3248 198 62 16 chr4 0 958 -184287704 + L1 LINE L1 2957 3998 -2148 2292 84 7 10 chr4 958 1257 -184287405 + AluSq SINE Alu 1 298 -15 3248 198 62 16 chr4 1257 1343 -184287319 + L1 LINE L1 3998 4079 -2067 464 286 7 0 chr4 1852 1992 -184286670 + L1MC5 LINE L1 6650 6790 -1171 587 280 54 16 chr4 2027 2389 -184286273 + L1MC5 LINE L1 7494 7913 -48 258 310 54 29 chr4 2436 2675 -184285987 - L1M4 LINE L1 -1161 4985 4741 732 266 24 34 chr4 3203 3410 -184285252 + L1M4b LINE L1 17 221 -6638 299 116 0 0 chr4 3510 3553 -184285109 + AluSc SINE Alu 247 289 -10 459 262 128 0 chr4 3570 3742 -184284920 - MER33 DNA MER1_type -129 195 2 707 206 14 27 chr4 3947 4093 -184284569 - MER61D LTR ERV1 -20 481 338 2071 123 0 0 chr4 4560 4870 -184283792 - AluSc SINE Alu 0 312 3 3644 127 37 0 chr4 5128 5705 -184282957 - MER51C LTR ERV1 0 640 1 2267 78 0 4 chr4 5950 6231 -184282431 - AluSc SINE Alu -17 292 13 336 227 40 0 chr4 6232 6307 -184282355 + MER5B DNA MER1_type 85 162 -16 435 127 0 0 chr4 6765 6828 -184281834 + AluS SINE Alu 2 64 -249 8786 63 2 3 chr4 6842 7914 -184280748 - MER11C LTR ERVK 0 1071 1 1566 111 0 0 chr4 7914 8121 -184280541 + AluSc SINE Alu 88 294 -15 280 250 0 50 chr4 8177 8277 -184280385 - L1ME3A LINE L1 -8 6162 6068 1453 224 0 14 chr4 8423 8717 -184279945 - AluJb SINE Alu -22 290 1 2156 104 7 20 chr4 8721 9020 -184279642 - AluY SINE Alu -16 295 1 421 178 14 0 chr4 9078 9151 -184279511 - AluJo SINE Alu -168 134 61 568 229 93 19 chr4 9269 9328 -184279334 - L1M3c LINE L1 -4674 1291 1238 2247 106 7 0 chr4 9328 9629 -184279033 - AluSx SINE Alu -9 303 1 568 229 93 19 chr4 9629 9893 -184278769 - L1M3c LINE L1 -4727 1238 945 25330 88 8 10 chr4 9898 11932 -184276730 - L1PA7 LINE L1 0 6154 4117 2347 105 0 0 chr4 11932 12227 -184276435 - AluSx SINE Alu -17 295 1 25330 88 8 10 chr4 12227 13977 -184274685 - L1PA7 LINE L1 -2037 4117 2380 2374 78 0 7 chr4 13977 14270 -184274392 - AluY SINE Alu -20 291 1 25330 88 8 10 chr4 14270 14938 -184273724 - L1PA7 LINE L1 -3774 2380 1712 1779 276 42 47 chr4 14931 14959 -184273703 - L1M3c LINE L1 -4984 971 944 * 2167 116 3 0 chr4 14959 15253 -184273409 - AluSx SINE Alu -17 295 1 1779 276 42 47 chr4 15253 15974 -184272688 - L1M3c LINE L1 -5011 944 344 424 320 37 0 chr4 15952 16157 -184272505 - L1M3a LINE L1 -5219 736 550 * 509 325 68 24 chr4 16159 16411 -184272251 - L1M3a LINE L1 -5501 454 192 284 136 27 55 chr4 16531 16641 -184272021 + MER4-int LTR ERV1 567 673 -5925 409 137 14 27 chr4 16985 17058 -184271604 + MER4-int LTR ERV1 739 810 -5788 263 95 0 0 chr4 17086 17128 -184271534 + MER4-int LTR ERV1 685 726 -5872 232 178 0 44 chr4 17161 17206 -184271456 + LTR49 LTR ERV1 271 313 -282 640 103 31 0 chr4 17226 17323 -184271339 + MER4-int LTR ERV1 993 1092 -5506 2235 100 0 10 chr4 17324 17623 -184271039 + AluSc SINE Alu 1 296 -13 6510 97 152 147 chr4 17766 18044 -184270618 + MER4-int LTR ERV1 532 807 -5791 2364 62 31 0 chr4 18044 18332 -184270330 + AluY SINE Alu 1 297 -14 6510 97 152 147 chr4 18332 18740 -184269922 + MER4-int LTR ERV1 807 1211 -5387 2395 73 0 17 chr4 18740 19042 -184269620 + AluY SINE Alu 1 297 -14 6510 97 152 147 chr4 19042 19524 -184269138 + MER4-int LTR ERV1 1211 1689 -4909 2001 154 0 20 chr4 19524 19829 -184268833 - AluSx SINE Alu -13 299 1 6510 97 152 147 chr4 19829 20848 -184267814 + MER4-int LTR ERV1 1689 3533 -3065 1385 86 34 75 chr4 20903 21033 -184267629 + MER4-int LTR ERV1 3837 3952 -2646 2406 78 0 28 chr4 21033 21353 -184267309 - AluY SINE Alu 0 311 1 1385 86 34 75 chr4 21353 21489 -184267173 + MER4-int LTR ERV1 3952 4092 -2506 1965 118 30 0 chr4 21789 22080 -184266582 - AluSg SINE Alu 0 299 1 1163 117 0 0 chr4 22255 22418 -184266244 - AluSg/x SINE Alu -13 297 135 333 210 50 0 chr4 22627 22727 -184265935 - Charlie5 DNA MER1_type -41 2571 2467 1574 77 39 0 chr4 22728 22935 -184265727 - AluY SINE Alu 0 311 97 239 139 0 23 chr4 23235 23278 -184265384 + L1MB8 LINE L1 841 882 -5660 22 56 0 0 chr4 23532 23568 -184265094 + AT_rich Low_complexity Low_complexity 1 36 0 369 0 0 0 chr4 23644 23685 -184264977 + (TG)n Simple_repeat Simple_repeat 2 42 0 316 290 59 32 chr4 23714 23900 -184264762 - L1MC4a LINE L1 -1878 5930 5740 186 295 92 46 chr4 23909 24126 -184264536 - L2 LINE L2 -228 3044 2818 195 322 0 0 chr4 24276 24335 -184264327 - L2 LINE L2 -694 2620 2562 235 297 77 13 chr4 24419 24574 -184264088 - L1MC4a LINE L1 -2328 5480 5316 552 237 87 27 chr4 25580 25799 -184262863 + L2 LINE L2 3077 3308 -5 265 313 20 30 chr4 26502 26601 -184262061 + MIR3 SINE MIR 83 180 -28 2443 66 0 3 chr4 28507 28809 -184259853 + AluSc SINE Alu 1 301 -8 1062 238 155 32 chr4 28983 29626 -184259036 + L1MB8 LINE L1 1386 2384 -4441 1599 198 44 68 chr4 29660 29826 -184258836 + L1MB8 LINE L1 6159 6327 -349 2410 91 3 7 chr4 29826 30135 -184258527 - AluSp SINE Alu -5 308 1 1599 198 44 68 chr4 30135 30422 -184258240 + L1MB8 LINE L1 6327 6601 -75 3534 125 0 4 chr4 30592 31104 -184257558 + MER9 LTR ERVK 1 510 -1 287 308 56 0 chr4 32556 32663 -184255999 + MIR SINE MIR 31 143 -119 353 252 220 13 chr4 32759 33072 -184255590 + L2 LINE L2 2871 3248 -65 224 147 26 58 chr4 33099 33292 -184255370 + (CAGAGA)n Simple_repeat Simple_repeat 1 186 0 228 179 13 51 chr4 33204 33282 -184255380 + (CAGAA)n Simple_repeat Simple_repeat 5 79 0 667 230 0 14 chr4 33908 34047 -184254615 + AluJo SINE Alu 2 138 -174 1303 148 0 48 chr4 35497 35726 -184252936 - AluJo SINE Alu -13 299 82 555 282 12 0 chr4 36557 36727 -184251935 + L1MB2 LINE L1 16 187 -6355 2183 113 7 3 chr4 37452 37765 -184250897 + AluSx SINE Alu 1 314 0 1706 182 0 7 chr4 37826 38123 -184250539 - AluJb SINE Alu -17 295 1 917 251 118 30 chr4 38142 38505 -184250157 - MER21B LTR ERV1 -69 794 400 300 274 32 21 chr4 38519 38614 -184250048 + MER92B LTR ERV1 33 128 -508 803 214 92 74 chr4 38648 38819 -184249843 + MER92B LTR ERV1 294 460 -176 2288 87 0 3 chr4 38819 39108 -184249554 - AluSc SINE Alu -21 288 1 803 214 92 74 chr4 39108 39273 -184249389 + MER92B LTR ERV1 460 636 0 539 110 37 0 chr4 39767 39849 -184248813 - AluSc SINE Alu -224 85 1 2187 106 3 6 chr4 39905 40216 -184248446 + AluY SINE Alu 2 311 0 508 255 98 76 chr4 40221 41114 -184247548 + L1MB2 LINE L1 2416 3331 -3313 1408 99 0 35 chr4 41121 41322 -184247340 + AluYa5 SINE Alu 103 296 -15 442 293 68 8 chr4 41358 41624 -184247038 + L1MA8 LINE L1 4527 4808 -1338 750 287 126 2 chr4 41658 42072 -184246590 + L1MB2 LINE L1 5675 6139 -32 1786 185 65 120 chr4 42202 43328 -184245334 + L1MA8 LINE L1 4884 5937 -354 226 284 0 25 chr4 43331 43412 -184245250 + L1MB2 LINE L1 5544 5622 -1022 2391 80 0 3 chr4 43519 43821 -184244841 + AluY SINE Alu 1 301 -10 360 0 0 0 chr4 43821 43861 -184244801 + (TA)n Simple_repeat Simple_repeat 2 41 0 404 246 103 17 chr4 43861 44036 -184244626 + L1MB2 LINE L1 6147 6336 -345 3870 98 72 3 chr4 44039 44610 -184244052 + LTR66 LTR ERVL 1 610 0 13495 98 7 1 chr4 44610 46396 -184242266 + HERVL66 LTR ERVL 1 1797 -2532 313 71 54 71 chr4 46376 46432 -184242230 + HERVL66 LTR ERVL 2654 2708 -1621 * 5097 74 5 12 chr4 46423 47561 -184241101 + HERVL66 LTR ERVL 3064 4329 0 4018 83 88 4 chr4 47561 48117 -184240545 + LTR66 LTR ERVL 1 603 -7 2135 96 4 7 chr4 48162 48434 -184240228 + AluSc SINE Alu 13 283 -26 490 309 75 10 chr4 48458 48753 -184239909 + L1MB2 LINE L1 6352 6665 -4 1013 86 0 0 chr4 49004 49132 -184239530 + AluSg/x SINE Alu 168 295 -15 1857 168 28 39 chr4 49132 49320 -184239342 - MSTA LTR MaLR -66 362 178 2354 83 0 32 chr4 49320 49632 -184239030 + AluY SINE Alu 1 302 -9 1857 168 28 39 chr4 49632 49807 -184238855 - MSTA LTR MaLR -250 178 3 808 270 41 4 chr4 49808 50078 -184238584 + L1MB1 LINE L1 5712 5991 -177 269 287 40 30 chr4 50076 50177 -184238485 + L1MA6 LINE L1 125 226 -5729 * 881 293 115 45 chr4 50181 50799 -184237863 + L1MA6 LINE L1 189 849 -5106 1177 231 49 81 chr4 50825 51088 -184237574 + L1MA6 LINE L1 3963 4233 -1801 658 227 0 0 chr4 51088 51216 -184237446 - FLAM_C SINE Alu -4 129 2 1177 231 49 81 chr4 51216 51544 -184237118 + L1MA6 LINE L1 4233 4535 -1499 330 213 13 0 chr4 51741 51816 -184236846 + L1MA6 LINE L1 5754 5829 -359 2138 80 20 40 chr4 51966 52265 -184236397 + AluY SINE Alu 4 296 -15 1018 295 74 15 chr4 52265 52740 -184235922 + L1MB2 LINE L1 5665 6167 -4 26 0 0 0 chr4 52984 53010 -184235652 + AT_rich Low_complexity Low_complexity 1 26 0 2156 107 6 22 chr4 53103 53420 -184235242 + AluSp SINE Alu 1 312 -1 269 174 22 0 chr4 53772 53818 -184234844 + L1M4c LINE L1 1 47 -5908 467 189 32 0 chr4 53850 53945 -184234717 - L1PBa LINE L1 -6463 400 303 24 32 0 0 chr4 56309 56340 -184232322 + AT_rich Low_complexity Low_complexity 1 31 0 2216 113 3 0 chr4 56884 57176 -184231486 + AluSq SINE Alu 1 293 -20 744 327 86 22 chr4 57179 57540 -184231122 + L1M4c LINE L1 71 454 -5501 2175 283 73 38 chr4 57552 59459 -184229203 + L1M4c LINE L1 344 1794 -4241 2224 99 7 0 chr4 59467 59760 -184228902 + AluY SINE Alu 1 295 -16 404 173 0 62 chr4 59832 59913 -184228749 + AluJo SINE Alu 61 136 -176 1726 186 0 14 chr4 59950 60235 -184228427 + AluJb SINE Alu 1 281 -31 1921 244 106 37 chr4 60277 60491 -184228171 + L1M4c LINE L1 1774 1972 -4062 2205 118 7 0 chr4 60491 60795 -184227867 + AluY SINE Alu 1 306 -5 1921 244 106 37 chr4 60795 60868 -184227794 + L1M4c LINE L1 1972 2039 -3995 1083 305 58 8 chr4 60868 61245 -184227417 + MSTD LTR MaLR 1 396 0 1921 244 106 37 chr4 61245 62169 -184226493 + L1M4c LINE L1 2039 3071 -2963 296 273 7 93 chr4 62171 62216 -184226446 - MER67C LTR ERV1 -573 137 90 2207 98 3 14 chr4 62216 62513 -184226149 + AluSg SINE Alu 1 294 -16 296 273 7 93 chr4 62513 62617 -184226045 - MER67C LTR ERV1 -620 90 1 264 122 0 0 chr4 63092 63133 -184225529 + (A)n Simple_repeat Simple_repeat 1 41 0 1508 203 0 23 chr4 63194 63495 -184225167 - AluJb SINE Alu -18 294 1 2156 51 83 11 chr4 63500 63776 -184224886 - AluY SINE Alu -15 296 1 871 283 79 6 chr4 63822 64140 -184224522 - MER21B LTR ERV1 -107 756 416 1293 223 156 31 chr4 64192 64704 -184223958 + MER92B LTR ERV1 59 634 -2 312 48 0 0 chr4 65876 65918 -184222744 + (TG)n Simple_repeat Simple_repeat 1 42 0 5159 187 51 13 chr4 66436 68139 -184220523 + L1MA3 LINE L1 4085 5722 -583 2211 54 91 0 chr4 68139 68415 -184220247 - AluY SINE Alu -10 301 1 5159 187 51 13 chr4 68415 68791 -184219871 + L1MA3 LINE L1 5722 6256 -49 2115 84 42 7 chr4 68791 69078 -184219584 + AluY SINE Alu 1 297 -14 5159 187 51 13 chr4 69078 69130 -184219532 + L1MA3 LINE L1 6256 6305 0 373 288 49 10 chr4 69556 69761 -184218901 + L1MB2 LINE L1 4639 4851 -1295 1086 257 39 12 chr4 69763 70098 -184218564 + L1MB2 LINE L1 5675 6018 -153 965 59 8 0 chr4 70146 70264 -184218398 - AluY SINE Alu -43 268 150 695 137 8 8 chr4 70274 70405 -184218257 - L1PA13 LINE L1 -4 6159 6029 1116 281 37 50 chr4 70517 70621 -184218041 + L1 LINE L1 4519 4623 -1523 2130 110 7 3 chr4 70621 70911 -184217751 - AluSg SINE Alu -17 293 3 1116 281 37 50 chr4 70911 71380 -184217282 + L1 LINE L1 4623 5084 -1062 1093 109 14 0 chr4 71380 71527 -184217135 - AluSg/x SINE Alu -16 294 146 1917 89 19 19 chr4 71528 71785 -184216877 - AluY SINE Alu -54 257 1 758 314 26 74 chr4 71855 72317 -184216345 + L1M3a LINE L1 118 557 -5398 1196 192 179 26 chr4 72522 72912 -184215750 + LTR7 LTR ERV1 1 450 0 2029 194 49 25 chr4 72912 73360 -184215302 + HERVH LTR ERV1 1 459 -7254 11594 150 9 41 chr4 73418 74241 -184214421 + HERVH LTR ERV1 800 1648 -6065 2985 13 0 0 chr4 74241 74559 -184214103 - AluYb8 SINE Alu 0 318 1 11594 150 9 41 chr4 74559 75546 -184213116 + HERVH LTR ERV1 1648 2534 -5179 2459 76 0 0 chr4 75546 75837 -184212825 + AluY SINE Alu 1 291 -20 11594 150 9 41 chr4 75837 76125 -184212537 + HERVH LTR ERV1 2534 2830 -4883 4130 135 2 5 chr4 76125 76764 -184211898 + HERVH LTR ERV1 3357 3993 -3720 2998 149 15 20 chr4 76747 77298 -184211364 + HERVH LTR ERV1 3993 5286 -1805 * 4460 125 40 38 chr4 77296 78247 -184210415 + pTR5 LTR ERV1 741 2025 -413 375 235 10 0 chr4 78247 78345 -184210317 + LTR30 LTR ERV1 544 642 -80 1546 90 5 9 chr4 78348 78571 -184210091 + pTR5 LTR ERV1 172 393 -2045 * 20375 150 5 3 chr4 78570 81821 -184206841 + HERVH LTR ERV1 4458 7713 0 1207 193 185 28 chr4 81821 82210 -184206452 + LTR7 LTR ERV1 1 450 0 3166 232 59 46 chr4 82338 82571 -184206091 + L1MA10 LINE L1 4112 4340 -1840 633 248 0 0 chr4 82571 82704 -184205958 - FLAM_C SINE Alu 0 133 1 3166 232 59 46 chr4 82704 83708 -184204954 + L1MA10 LINE L1 4340 5366 -814 1923 179 137 103 chr4 83721 84125 -184204537 + L1MA10 LINE L1 5529 5918 -416 821 126 0 22 chr4 84125 84260 -184204402 - FLAM_C SINE Alu 0 133 2 1923 179 137 103 chr4 84260 84449 -184204213 + L1MA10 LINE L1 5918 6099 -235 2335 101 0 0 chr4 84449 84747 -184203915 - AluSg SINE Alu -12 298 1 1923 179 137 103 chr4 84747 84902 -184203760 + L1MA10 LINE L1 6099 6304 -30 359 243 52 62 chr4 84933 85037 -184203625 + MER6B DNA MER2_type 1 104 -761 9620 23 2 245 chr4 85037 86852 -184201810 - SVA Other Other -1 1385 13 359 243 52 62 chr4 86852 86876 -184201786 + MER6B DNA MER2_type 104 127 -738 1693 102 0 5 chr4 86876 87092 -184201570 - AluSg SINE Alu -95 215 1 359 243 52 62 chr4 87092 87172 -184201490 + MER6B DNA MER2_type 127 208 -2 1202 144 5 0 chr4 87384 87572 -184201090 - MER30B DNA MER1_type -1 189 1 3685 126 14 14 chr4 88474 89045 -184199617 - LTR10C LTR ERV1 -20 571 1 3579 58 74 0 chr4 91540 91987 -184196675 - LTR2B LTR ERV1 0 490 11 2317 123 60 13 chr4 92095 92526 -184196136 - LTR56 LTR ERV1 -5 433 9 2124 106 0 26 chr4 92847 93150 -184195512 - AluY SINE Alu -16 295 1 1392 229 50 48 chr4 93305 93952 -184194710 - MER67C LTR ERV1 -5 705 1 307 290 99 34 chr4 94718 94980 -184193682 - MER21B LTR ERV1 -169 694 416 390 266 8 16 chr4 95012 95136 -184193526 + MER93a LTR ERV1 244 366 -36 23 0 0 0 chr4 95978 96001 -184192661 + AT_rich Low_complexity Low_complexity 1 23 0 883 247 62 43 chr4 96074 96192 -184192470 - MER33 DNA MER1_type -2275 310 196 1955 132 16 3 chr4 96192 96495 -184192167 + AluSc SINE Alu 1 307 -2 883 247 62 43 chr4 96495 96680 -184191982 - MER33 DNA MER1_type -2389 196 1 723 205 49 33 chr4 96883 97088 -184191574 - MER61D LTR ERV1 -18 732 338 3512 131 38 2 chr4 97747 98322 -184190340 - MER51C LTR ERV1 0 640 3 1060 291 131 7 chr4 98506 98925 -184189737 - MLT1H LTR MaLR -72 477 7 2454 63 7 3 chr4 99575 99874 -184188788 + AluY SINE Alu 1 300 -11 592 249 51 51 chr4 99897 100114 -184188548 - MER52-int LTR ERV1 -1818 5273 5057 597 108 24 0 chr4 100116 100199 -184188463 + AluS SINE Alu 5 89 -223 2071 131 3 3 chr4 100403 100708 -184187954 - AluSc SINE Alu -4 305 1 943 149 90 11 chr4 102084 102272 -184186390 + L1MA3 LINE L1 6098 6300 -5 21 0 0 0 chr4 102528 102549 -184186113 + AT_rich Low_complexity Low_complexity 1 21 0 393 344 33 44 chr4 106012 106378 -184182284 + L1MB2 LINE L1 418 779 -5524 2038 109 0 4 chr4 106755 107030 -184181632 + AluY SINE Alu 4 277 -34 2180 107 0 3 chr4 107067 107356 -184181306 + AluSc SINE Alu 6 293 -16 43 35 0 0 chr4 107442 107499 -184181163 + AT_rich Low_complexity Low_complexity 1 57 0 764 314 64 17 chr4 107517 107560 -184181102 + L1MB2 LINE L1 1315 1355 -5029 2269 94 0 10 chr4 107560 107857 -184180805 + AluY SINE Alu 1 294 -17 764 314 64 17 chr4 107857 108329 -184180333 + L1MB2 LINE L1 1355 1854 -4530 446 257 72 86 chr4 108338 108527 -184180135 + L1MB2 LINE L1 1969 2159 -4223 2341 97 0 3 chr4 108527 108826 -184179836 + AluSc SINE Alu 1 298 -11 252 0 0 0 chr4 108826 108854 -184179808 + (TA)n Simple_repeat Simple_repeat 2 29 0 446 257 72 86 chr4 108854 109402 -184179260 + L1MB2 LINE L1 2158 2693 -3689 246 32 0 0 chr4 109402 109433 -184179229 + (TG)n Simple_repeat Simple_repeat 2 32 0 446 257 72 86 chr4 109433 109616 -184179046 + L1MB2 LINE L1 2693 2877 -3505 604 266 79 38 chr4 109620 109910 -184178752 + L1MB2 LINE L1 4785 5086 -1296 666 274 38 99 chr4 109914 110050 -184178612 + L1MB2 LINE L1 5912 6055 -352 2013 135 0 17 chr4 110050 110347 -184178315 + AluSx SINE Alu 1 292 -20 666 274 38 99 chr4 110347 110675 -184177987 + L1MB2 LINE L1 6055 6401 -6 509 101 0 79 chr4 110675 110764 -184177898 + L1PA7 LINE L1 6073 6154 0 666 274 38 99 chr4 110764 110788 -184177874 + L1MB2 LINE L1 6401 6370 -37 2090 109 39 0 chr4 110788 111072 -184177590 + AluSg SINE Alu 1 295 -15 666 274 38 99 chr4 111072 111107 -184177555 + L1MB2 LINE L1 6369 6405 -2 21 0 0 0 chr4 111409 111430 -184177232 + AT_rich Low_complexity Low_complexity 1 21 0 707 250 16 21 chr4 111430 111618 -184177044 - L1 LINE L1 -2055 4091 3905 1784 158 27 10 chr4 111624 111921 -184176741 + AluSx SINE Alu 1 302 -10 3217 227 45 17 chr4 111922 111991 -184176671 + L1MB2 LINE L1 4410 4476 -1670 1975 146 17 0 chr4 111991 112286 -184176376 + AluSg SINE Alu 2 301 -9 3217 227 45 17 chr4 112286 113113 -184175549 + L1MB2 LINE L1 4476 5331 -815 4823 180 36 2 chr4 113123 113983 -184174679 + L1P LINE L1 11 899 -5247 17536 56 10 0 chr4 113991 114820 -184173842 + L1PA5 LINE L1 3243 4062 -2092 2147 102 0 7 chr4 114820 115115 -184173547 - AluY SINE Alu -16 295 3 17536 56 10 0 chr4 115115 117204 -184171458 + L1PA5 LINE L1 4062 6153 -1 684 262 98 6 chr4 117206 117521 -184171141 + L1MB2 LINE L1 5820 6167 -4 22 0 0 0 chr4 117768 117790 -184170872 + AT_rich Low_complexity Low_complexity 1 22 0 904 328 88 24 chr4 118339 118757 -184169905 + L1M3a LINE L1 10 454 -5501 333 314 29 0 chr4 118765 118867 -184169795 + L1M3a LINE L1 640 744 -5211 2041 285 43 31 chr4 118947 119717 -184168945 + L1M3a LINE L1 344 1004 -4951 2023 111 7 0 chr4 119719 119989 -184168673 + AluSc SINE Alu 3 274 -35 227 258 269 0 chr4 120348 120441 -184168221 - MER5A DNA MER1_type -16 173 56 2253 107 0 0 chr4 120512 120812 -184167850 + AluSg SINE Alu 1 300 -10 2107 125 0 3 chr4 120842 121138 -184167524 + AluSp SINE Alu 1 295 -18 570 125 42 0 chr4 121650 121746 -184166916 + AluSg/x SINE Alu 213 312 0 2956 246 43 22 chr4 121754 122087 -184166575 + L1MB2 LINE L1 5278 5602 -569 1630 204 3 0 chr4 122087 122371 -184166291 + AluJb SINE Alu 3 287 -25 2956 246 43 22 chr4 122371 122910 -184165752 + L1MB2 LINE L1 5602 6169 -2 230 291 9 45 chr4 124166 124240 -184164422 + L1MB2 LINE L1 4882 4952 -1194 2301 78 17 10 chr4 124240 124536 -184164126 + AluSx SINE Alu 1 298 -14 230 291 9 45 chr4 124536 124571 -184164091 + L1MB2 LINE L1 4952 4987 -1159 947 232 41 50 chr4 124592 124781 -184163881 + L1MB2 LINE L1 5664 5850 -321 414 234 15 102 chr4 124781 124918 -184163744 + FLAM_C SINE Alu 1 125 -8 947 232 41 50 chr4 124918 125069 -184163593 + L1MB2 LINE L1 5850 6001 -170 342 245 103 73 chr4 125122 125355 -184163307 - TAR1 Satellite telomeric -1847 264 25 * 1244 223 36 22 chr4 125217 125671 -184162991 - LTR60 LTR ERV1 -41 545 1 2036 78 82 3 chr4 125770 126052 -184162610 + AluY SINE Alu 2 305 -6 660 313 56 47 chr4 126207 126651 -184162011 - LTR60-int LTR ERV1 -314 6891 6444 2282 76 3 0 chr4 128109 128400 -184160262 - AluY SINE Alu -19 292 1 2207 110 0 3 chr4 128404 128712 -184159950 - AluSg SINE Alu -3 307 1 249 288 40 56 chr4 129693 129818 -184158844 - MER93b LTR ERV1 -36 337 215 211 333 200 22 chr4 130011 130146 -184158516 + MER5A DNA MER1_type 31 189 0 323 237 131 81 chr4 130869 130947 -184157715 - MER6B DNA MER2_type -656 209 136 2128 109 13 3 chr4 130947 131249 -184157413 + AluSq SINE Alu 1 305 -8 323 237 131 81 chr4 131249 131368 -184157294 - MER6B DNA MER2_type -729 136 2 2292 164 104 101 chr4 131404 132156 -184156506 - L1MA9 LINE L1 -30 6170 5417 2908 216 67 89 chr4 132165 132290 -184156372 - L1MA9 LINE L1 -779 5255 5129 1792 127 80 4 chr4 132290 132566 -184156096 - AluSc SINE Alu -12 297 1 195 42 0 0 chr4 132566 132590 -184156072 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1713 140 4 4 chr4 132590 132840 -184155822 - AluSp SINE Alu -28 285 36 2908 216 67 89 chr4 132840 133126 -184155536 - L1MA9 LINE L1 -903 5131 4840 2300 73 7 3 chr4 133126 133414 -184155248 + AluY SINE Alu 2 290 -21 2908 216 67 89 chr4 133414 134072 -184154590 - L1MA9 LINE L1 -1194 4840 4216 675 241 0 0 chr4 134072 134205 -184154457 + FLAM_C SINE Alu 1 133 0 2908 216 67 89 chr4 134205 134463 -184154199 - L1MA9 LINE L1 -1818 4216 3954 934 294 64 82 chr4 134492 134857 -184153805 - L1MA9 LINE L1 -5106 849 504 2106 96 3 45 chr4 134857 135025 -184153637 - AluSg SINE Alu -10 300 149 2217 74 42 0 chr4 135025 135308 -184153354 - AluY SINE Alu -15 296 2 2106 96 3 45 chr4 135308 135452 -184153210 - AluSg SINE Alu -161 149 1 934 294 64 82 chr4 135452 135825 -184152837 - L1MA9 LINE L1 -5451 504 125 449 211 48 160 chr4 135823 136065 -184152597 - L1MB2 LINE L1 -180 5991 5790 * 2373 69 16 13 chr4 136065 136370 -184152292 - AluY SINE Alu -5 306 1 449 211 48 160 chr4 136370 136440 -184152222 - L1MB2 LINE L1 -381 5790 5714 943 195 6 6 chr4 136441 136615 -184152047 + MSTA LTR MaLR 1 174 -254 973 107 0 0 chr4 137187 137318 -184151344 + AluSg/x SINE Alu 178 308 -4 247 239 56 80 chr4 137343 137556 -184151106 - L1M1 LINE L1 -4015 2367 2160 2333 76 0 10 chr4 137573 137875 -184150787 + AluY SINE Alu 1 299 -12 2259 115 3 0 chr4 137878 138183 -184150479 + AluSp SINE Alu 1 306 -7 2102 173 78 111 chr4 138184 138330 -184150332 + L1MA9 LINE L1 5606 5755 -557 249 133 0 0 chr4 138330 138375 -184150287 + LTR66 LTR ERVL 394 438 -172 2102 173 78 111 chr4 138375 138888 -184149774 + L1MA9 LINE L1 5755 6286 -26 503 188 99 35 chr4 138919 139122 -184149540 + MER6 DNA MER2_type -65 864 -1 1295 82 54 22 chr4 139381 139464 -184149198 - MER30B DNA MER1_type 0 190 111 1903 101 4 0 chr4 139464 139712 -184148950 - AluSp SINE Alu -8 305 57 1295 82 54 22 chr4 139712 139812 -184148850 - MER30B DNA MER1_type -79 111 1 2463 82 0 0 chr4 140395 140701 -184147961 - AluSc SINE Alu -3 306 1 23 0 0 0 chr4 140883 140906 -184147756 + AT_rich Low_complexity Low_complexity 1 23 0 2566 65 0 0 chr4 141463 141771 -184146891 - AluY SINE Alu -3 308 1 211 324 14 14 chr4 142652 142723 -184145939 - MER5A DNA MER1_type -88 101 31 2278 75 27 7 chr4 143853 144147 -184144515 + AluSg SINE Alu 1 300 -10 2466 144 64 9 chr4 144174 144596 -184144066 - LTR56 LTR ERV1 0 445 1 2091 119 20 0 chr4 145622 145924 -184142738 + AluSc SINE Alu 1 308 -1 2109 142 0 0 chr4 145929 146231 -184142431 + AluSg SINE Alu 1 302 -8 784 266 55 48 chr4 146404 146940 -184141722 - L1M1 LINE L1 -4484 1898 1281 2431 82 3 3 chr4 147324 147628 -184141034 + AluY SINE Alu 1 304 -7 255 313 57 52 chr4 147824 148016 -184140646 - L1M1 LINE L1 -5613 690 498 2321 108 0 0 chr4 151642 151949 -184136713 + AluSp SINE Alu 1 307 -6 984 139 36 0 chr4 152833 152998 -184135664 - L1MA3 LINE L1 -8 6297 6127 2215 108 0 0 chr4 154345 154640 -184134022 - AluY SINE Alu -16 295 1 486 245 141 12 chr4 155042 155205 -184133457 - MIR SINE MIR -75 187 4 2392 72 0 3 chr4 155247 155540 -184133122 - AluY SINE Alu -19 292 1 2134 119 13 13 chr4 155643 155946 -184132716 + AluSq SINE Alu 3 305 -8 422 290 108 42 chr4 155948 156108 -184132554 + L1M3c LINE L1 1267 1415 -4726 2213 99 3 49 chr4 156108 156432 -184132230 + AluSc SINE Alu 1 309 0 422 290 108 42 chr4 156432 156605 -184132057 + L1M3c LINE L1 1415 1622 -4519 437 198 40 24 chr4 156745 156871 -184131791 + MER67C LTR ERV1 10 137 -573 1161 254 82 30 chr4 156874 157505 -184131157 - L1 LINE L1 -2963 3183 2363 2010 119 6 50 chr4 157505 157845 -184130817 - AluSx SINE Alu 0 312 1 1161 254 82 30 chr4 157845 158037 -184130625 - L1 LINE L1 -3783 2363 2182 464 280 128 29 chr4 158039 158282 -184130380 - MSTD LTR MaLR 0 396 191 1844 127 4 4 chr4 158290 158565 -184130097 + AluSg SINE Alu 1 275 -35 366 248 67 0 chr4 158667 158772 -184129890 + L1MB2 LINE L1 5893 6004 -167 238 189 79 87 chr4 158848 158975 -184129687 - TAR1 Satellite telomeric -1926 185 60 * 1947 213 72 44 chr4 158868 159409 -184129253 - LTR60 LTR ERV1 -30 556 1 653 327 40 32 chr4 159617 159993 -184128669 - LTR60-int LTR ERV1 -281 6924 6546 251 215 15 15 chr4 160237 160302 -184128360 - LTR60-int LTR ERV1 -476 6509 6445 367 360 56 27 chr4 162058 162453 -184126209 - HERV30 LTR ERV1 -2011 5862 4698 2370 78 0 0 chr4 162691 163008 -184125654 + AluY SINE Alu 1 317 0 459 71 0 100 chr4 163217 163287 -184125375 - Alu SINE Alu -254 64 2 768 206 41 18 chr4 163355 163525 -184125137 - L1 LINE L1 -2055 4091 3918 2805 218 115 15 chr4 163555 164138 -184124524 + L1 LINE L1 4408 5106 -1040 2364 93 0 0 chr4 164138 164438 -184124224 + AluSg SINE Alu 1 300 -10 2805 218 115 15 chr4 164438 164712 -184123950 + L1 LINE L1 5106 5351 -795 2344 111 0 0 chr4 164923 165230 -184123432 - AluSg SINE Alu -3 307 1 2147 120 3 0 chr4 165460 165761 -184122901 - AluSg SINE Alu -8 302 1 1039 217 80 35 chr4 165877 166326 -184122336 - L1MA8 LINE L1 -4 6287 5748 2133 110 7 27 chr4 166460 166760 -184121902 + AluSq SINE Alu 1 294 -19 304 250 115 0 chr4 166760 166856 -184121806 - MIR SINE MIR -75 187 81 325 327 73 14 chr4 167101 167321 -184121341 - HAL1 LINE L1 -295 2212 1980 286 290 9 9 chr4 167381 167488 -184121174 + HERVFH21 LTR ERV1 3967 4073 -2456 851 113 0 0 chr4 167488 167612 -184121050 - AluSg/x SINE Alu -4 308 185 2120 105 0 51 chr4 167744 168057 -184120605 - AluSx SINE Alu -14 298 2 883 209 37 81 chr4 168091 168345 -184120317 + L1MA9 LINE L1 5002 5235 -911 2156 116 14 0 chr4 168345 168637 -184120025 + AluY SINE Alu 1 296 -15 883 209 37 81 chr4 168637 168764 -184119898 + L1MA9 LINE L1 5235 5366 -780 2162 178 84 115 chr4 168767 168850 -184119812 + L1MA9 LINE L1 5518 5602 -710 2450 70 0 0 chr4 168850 169149 -184119513 + AluY SINE Alu 1 299 -12 2259 115 3 0 chr4 169152 169457 -184119205 + AluSp SINE Alu 1 306 -7 2162 178 84 115 chr4 169457 169604 -184119058 + L1MA9 LINE L1 5604 5754 -558 249 133 0 0 chr4 169604 169649 -184119013 + LTR66 LTR ERVL 394 438 -172 2162 178 84 115 chr4 169649 170162 -184118500 + L1MA9 LINE L1 5754 6286 -26 311 185 31 31 chr4 170193 170258 -184118404 - MER6 DNA MER2_type 0 865 801 1108 304 43 45 chr4 170388 170560 -184118102 - L1M4 LINE L1 -1954 4192 4021 2489 82 0 0 chr4 170560 170863 -184117799 - AluSg SINE Alu -7 303 1 1108 304 43 45 chr4 170863 171130 -184117532 - L1M4 LINE L1 -2125 4021 3752 2269 97 3 7 chr4 171130 171430 -184117232 - AluSc SINE Alu -10 299 1 1108 304 43 45 chr4 171430 171680 -184116982 - L1M4 LINE L1 -2394 3752 3503 335 309 133 21 chr4 171753 171941 -184116721 - L1M4 LINE L1 -1194 4952 4744 1619 111 0 0 chr4 171979 172195 -184116467 - AluSq SINE Alu -12 301 86 635 146 89 8 chr4 172299 172422 -184116240 + LTR23 LTR ERV1 300 432 -5 183 211 58 19 chr4 173311 173363 -184115299 - L2 LINE L2 -85 3228 3175 26 0 0 0 chr4 174117 174143 -184114519 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr4 174195 174218 -184114444 + (T)n Simple_repeat Simple_repeat 1 23 0 2200 110 10 0 chr4 174537 174836 -184113826 - AluSg SINE Alu -6 304 3 221 340 88 25 chr4 175202 175361 -184113301 - MER5B DNA MER1_type -1 177 9 7893 82 16 19 chr4 175864 176874 -184111788 + LTR13 LTR ERVK 1 1007 0 456 67 0 0 chr4 176877 176937 -184111725 + (TATG)n Simple_repeat Simple_repeat 2 61 0 2141 106 3 3 chr4 176939 177222 -184111440 - AluSq SINE Alu -30 283 1 6565 220 24 15 chr4 177233 177269 -184111393 - L1PA12 LINE L1 -4329 3255 3221 2695 151 37 31 chr4 177269 177758 -184110904 - LTR22B LTR ERVK 0 492 1 6565 220 24 15 chr4 177758 179991 -184108671 - L1PA12 LINE L1 -4363 3221 178 1766 250 144 5 chr4 180151 180762 -184107900 - MER67C LTR ERV1 -14 696 1 366 273 76 73 chr4 181437 181781 -184106881 - MER21B LTR ERV1 -75 856 416 262 323 8 16 chr4 181813 181937 -184106725 + MER93b LTR ERV1 215 337 -36 335 231 0 23 chr4 182771 182901 -184105761 + (CA)n Simple_repeat Simple_repeat 2 128 0 597 240 190 14 chr4 184114 184335 -184104327 + MIR SINE MIR 2 261 -1 237 221 0 0 chr4 185232 185300 -184103362 + (TCCA)n Simple_repeat Simple_repeat 3 70 0 317 254 164 25 chr4 185728 185850 -184102812 + MIR3 SINE MIR 7 145 -63 2023 139 0 0 chr4 186267 186572 -184102090 - AluSx SINE Alu 0 305 1 22 56 0 0 chr4 186572 186608 -184102054 + AT_rich Low_complexity Low_complexity 1 36 0 23 68 0 0 chr4 186767 186811 -184101851 + AT_rich Low_complexity Low_complexity 1 44 0 1959 100 8 0 chr4 187039 187298 -184101364 - AluSq SINE Alu -52 261 1 21 36 0 0 chr4 187298 187326 -184101336 + AT_rich Low_complexity Low_complexity 1 28 0 231 108 27 0 chr4 187384 187421 -184101241 + Alu SINE Alu 61 98 -204 496 95 0 0 chr4 187522 187585 -184101077 - AluJ/FLAM SINE Alu -248 64 2 476 165 10 39 chr4 187823 187926 -184100736 - SVA Other Other -704 682 583 2490 76 3 0 chr4 188576 188878 -184099784 - AluSp SINE Alu -10 303 1 2423 91 0 3 chr4 188878 189187 -184099475 - AluY SINE Alu -2 309 2 2091 120 6 35 chr4 189790 190107 -184098555 - AluSq SINE Alu -5 308 1 2014 123 41 3 chr4 190470 190762 -184097900 + AluSg SINE Alu 1 303 -7 265 256 174 25 chr4 191016 191137 -184097525 - MIR3 SINE MIR -63 145 7 2331 107 0 0 chr4 191184 191484 -184097178 + AluSc SINE Alu 1 300 -9 333 162 0 0 chr4 191778 191846 -184096816 + (TGGA)n Simple_repeat Simple_repeat 3 70 0 1161 257 75 32 chr4 192845 193482 -184095180 + L2 LINE L2 2624 3277 -36 2004 123 77 40 chr4 193780 194131 -184094531 + THE1B LTR MaLR 1 364 0 7838 108 12 2 chr4 194131 195208 -184093454 + THE1B-int LTR MaLR 1 1088 -492 2339 176 18 17 chr4 195205 195843 -184092819 - L1P4 LINE L1 -486 5680 5044 * 394 192 0 19 chr4 195878 195982 -184092680 + CT-rich Low_complexity Low_complexity 2 103 0 1156 248 6 58 chr4 196110 196280 -184092382 - AluJb SINE Alu -6 296 148 2252 116 0 0 chr4 196280 196572 -184092090 - AluSg SINE Alu -18 292 1 1156 248 6 58 chr4 196572 196712 -184091950 - AluJb SINE Alu -154 148 2 2432 83 3 0 chr4 196929 197229 -184091433 - AluSp SINE Alu -11 302 2 2265 92 7 13 chr4 197239 197545 -184091117 - AluY SINE Alu -7 304 1 195 218 55 0 chr4 199137 199192 -184089470 + MER5A DNA MER1_type 56 113 -76 2412 86 0 3 chr4 199385 199689 -184088973 + AluY SINE Alu 1 303 -8 299 226 0 47 chr4 199916 200022 -184088640 + L1ME3A LINE L1 6068 6168 -2 373 98 0 33 chr4 200107 200168 -184088494 + Alu SINE Alu 237 295 -7 430 240 23 76 chr4 200581 200752 -184087910 - MER5B DNA MER1_type -16 162 1 3677 122 48 2 chr4 201713 202288 -184086374 + MER51C LTR ERV1 1 640 0 662 228 13 27 chr4 202998 203147 -184085515 + MER61D LTR ERV1 338 484 -17 966 221 100 7 chr4 203350 203630 -184085032 + MER33 DNA MER1_type 5 310 -14 353 266 80 62 chr4 204518 204792 -184083870 + MER21A LTR ERV1 578 856 -75 237 81 27 0 chr4 205551 205588 -184083074 + MER67C LTR ERV1 69 106 -604 1770 100 4 0 chr4 205589 205828 -184082834 - AluSx SINE Alu -11 301 62 4750 25 7 4 chr4 205832 206388 -184082274 - LTR6B LTR ERV1 0 558 1 420 121 0 0 chr4 206388 206446 -184082216 - AluSx SINE Alu -250 61 4 1264 239 48 5 chr4 206450 206974 -184081688 + MER67C LTR ERV1 101 706 -4 7520 39 11 0 chr4 207350 208460 -184080202 - L1PA5 LINE L1 -7 6147 5035 740 211 45 0 chr4 208579 208735 -184079927 + LTR56 LTR ERV1 1 163 -282 1223 124 43 0 chr4 208739 208924 -184079738 - AluY SINE Alu 0 311 119 578 208 9 123 chr4 258925 259137 -184029525 - AluJb SINE Alu -115 197 10 652 265 69 26 chr4 259146 259493 -184029169 + L1 LINE L1 4308 4669 -1477 2135 61 18 4 chr4 259506 259813 -184028849 + AluY SINE Alu 1 311 0 1033 198 52 71 chr4 259831 260155 -184028507 + L1MA9 LINE L1 5969 6286 -26 369 236 133 15 chr4 260182 260363 -184028299 + MER6 DNA MER2_type -65 861 -4 200 216 0 0 chr4 260512 260549 -184028113 - MIR SINE MIR -17 245 209 576 134 0 0 chr4 260602 260684 -184027978 - MER30B DNA MER1_type 0 190 109 2086 93 10 10 chr4 260685 260987 -184027675 + AluSc SINE Alu 1 302 -7 1623 216 74 13 chr4 260990 261577 -184027085 - MER67C LTR ERV1 -31 679 1 350 295 79 44 chr4 262261 262622 -184026040 - MER21B LTR ERV1 -75 856 416 346 276 48 28 chr4 262654 262799 -184025863 + MER93a LTR ERV1 244 391 -11 1947 106 34 0 chr4 263500 263792 -184024870 - AluSq SINE Alu -11 302 1 216 254 0 0 chr4 263894 263953 -184024709 + (CACG)n Simple_repeat Simple_repeat 1 59 0 431 218 92 0 chr4 264070 264212 -184024450 - MER33 DNA MER1_type -14 349 195 229 269 0 0 chr4 264213 264265 -184024397 + LTR30 LTR ERV1 1 52 -670 808 136 8 15 chr4 264265 264397 -184024265 + LTR12 LTR ERV1 53 183 -531 279 253 30 20 chr4 264521 264620 -184024042 + LTR30 LTR ERV1 544 643 -79 678 122 20 0 chr4 264622 264720 -184023942 + LTR12 LTR ERV1 615 714 0 2374 72 0 3 chr4 264742 265047 -184023615 + AluY SINE Alu 2 305 -6 451 287 26 0 chr4 265066 265181 -184023481 - MER33 DNA MER1_type -206 118 1 693 191 52 111 chr4 265385 265545 -184023117 - MER61D LTR ERV1 -17 732 564 2048 96 7 13 chr4 265545 265846 -184022816 - AluSq SINE Alu -3 310 12 693 191 52 111 chr4 265846 265892 -184022770 - MER61D LTR ERV1 -185 564 340 3807 132 20 0 chr4 266567 267155 -184021507 - MER51C LTR ERV1 0 640 1 1219 275 123 24 chr4 267291 267753 -184020909 - MLT1H LTR MaLR 0 549 34 2006 123 3 3 chr4 267753 268054 -184020608 - AluSq SINE Alu -12 301 1 1219 275 123 24 chr4 268054 268085 -184020577 - MLT1H LTR MaLR -515 34 7 4869 194 23 6 chr4 268172 269607 -184019055 + L1PA16 LINE L1 4705 6162 -4 302 255 114 46 chr4 271116 271256 -184017406 + L1ME1 LINE L1 1087 1216 -5180 195 42 0 0 chr4 271256 271280 -184017382 + (TA)n Simple_repeat Simple_repeat 2 25 0 302 255 114 46 chr4 271280 271402 -184017260 + L1ME1 LINE L1 1216 1367 -5029 1455 232 81 45 chr4 271458 271728 -184016934 + L1ME1 LINE L1 2946 3205 -3010 279 0 0 0 chr4 271728 271759 -184016903 + (CA)n Simple_repeat Simple_repeat 2 32 0 1455 232 81 45 chr4 271759 272129 -184016533 + L1ME1 LINE L1 3205 3609 -2606 2702 216 77 64 chr4 272139 272406 -184016256 + L1ME1 LINE L1 5108 5370 -865 3412 148 60 5 chr4 272406 273008 -184015654 - MER41B LTR ERV1 0 635 1 2702 216 77 64 chr4 273008 273807 -184014855 + L1ME1 LINE L1 5370 6185 -50 629 189 9 0 chr4 273807 273918 -184014744 - FRAM SINE Alu -19 157 46 339 149 0 1 chr4 273936 274075 -184014587 + Alu SINE Alu 244 372 0 1674 153 13 13 chr4 274271 274571 -184014091 - AluSx SINE Alu -12 300 1 243 319 14 0 chr4 274884 274953 -184013709 - L2 LINE L2 -82 3190 3121 1623 203 56 43 chr4 274986 275429 -184013233 + LTR2 LTR ERV1 1 449 0 1522 147 25 81 chr4 276331 276700 -184011962 - MER4A LTR ERV1 -2 662 256 464 133 44 11 chr4 276695 276785 -184011877 - MER4A LTR ERV1 -566 98 6 * 266 241 169 96 chr4 276981 277230 -184011432 + L2 LINE L2 2630 2896 -418 202 188 31 115 chr4 277679 277775 -184010887 - MIR SINE MIR -82 126 39 802 235 270 27 chr4 278336 279077 -184009585 - L2 LINE L2 -5 3308 2364 216 246 18 0 chr4 279139 279196 -184009466 + L2 LINE L2 2921 2978 -294 279 246 114 18 chr4 279421 279535 -184009127 + MIR SINE MIR 18 142 -66 21 0 0 0 chr4 280052 280073 -184008589 + GC_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 280357 280379 -184008283 + GC_rich Low_complexity Low_complexity 1 22 0 40 59 0 0 chr4 283342 283410 -184005252 + AT_rich Low_complexity Low_complexity 1 68 0 390 268 117 0 chr4 283613 283738 -184004924 - MIR SINE MIR -63 145 24 522 243 185 14 chr4 283765 283987 -184004675 + MIR SINE MIR 2 261 -1 249 275 29 0 chr4 284876 284945 -184003717 + (TCCA)n Simple_repeat Simple_repeat 3 73 0 322 200 156 22 chr4 285402 285492 -184003170 + MIR SINE MIR 44 145 -63 2704 275 20 12 chr4 285713 286463 -184002199 + L1PA12 LINE L1 524 1279 -6302 1705 141 121 0 chr4 286463 286776 -184001886 - MER61C LTR ERV1 0 434 84 10541 125 22 22 chr4 286799 288253 -184000409 - MER61C-int LTR ERV1 -9 5208 3755 2029 83 0 4 chr4 288253 288507 -184000155 + AluY SINE Alu 41 293 -18 10541 125 22 22 chr4 288507 288547 -184000115 - MER61C-int LTR ERV1 -1462 3755 3716 2146 112 0 27 chr4 288547 288842 -183999820 + AluSg SINE Alu 1 287 -23 10541 125 22 22 chr4 288842 290480 -183998182 - MER61C-int LTR ERV1 -1501 3716 1971 1194 170 48 15 chr4 290458 290729 -183997933 - MER61C-int LTR ERV1 -3577 1640 1361 * 4143 142 81 62 chr4 290724 290856 -183997806 - MER61C-int LTR ERV1 -4004 1213 1085 2163 122 0 0 chr4 290856 291150 -183997512 + AluSc SINE Alu 1 294 -15 270 81 0 0 chr4 291150 291187 -183997475 + (TG)n Simple_repeat Simple_repeat 2 38 0 4143 142 81 62 chr4 291187 291401 -183997261 - MER61C-int LTR ERV1 -4132 1085 877 2023 130 20 0 chr4 291401 291693 -183996969 - AluSg SINE Alu -12 298 1 4143 142 81 62 chr4 291693 292509 -183996153 - MER61C-int LTR ERV1 -4340 877 4 1027 151 53 7 chr4 292517 292626 -183996036 - MER61C LTR ERV1 -6 419 317 204 40 0 0 chr4 292626 292651 -183996011 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1027 151 53 7 chr4 292651 292840 -183995822 - MER61C LTR ERV1 -108 317 84 248 172 0 52 chr4 292855 292913 -183995749 + L1PA12 LINE L1 736 790 -6791 * 1257 196 39 15 chr4 292894 293198 -183995464 + L1PA12 LINE L1 1358 2460 -5124 1474 182 56 25 chr4 293530 293888 -183994774 + THE1C LTR MaLR 1 369 -6 8897 145 62 3 chr4 293893 295385 -183993277 + THE1C-int LTR MaLR 1 1580 0 518 185 23 39 chr4 295385 295515 -183993147 + THE1C LTR MaLR 1 128 -247 1706 145 0 0 chr4 295515 295756 -183992906 - AluSg SINE Alu -69 241 1 394 159 0 0 chr4 295756 295825 -183992837 + MSTA LTR MaLR 360 428 0 239 218 0 64 chr4 296033 296111 -183992551 + T-rich Low_complexity Low_complexity 2 74 0 21 71 0 0 chr4 296184 296226 -183992436 + AT_rich Low_complexity Low_complexity 1 42 0 203 158 0 0 chr4 296508 296546 -183992116 + (CA)n Simple_repeat Simple_repeat 1 38 0 923 292 49 35 chr4 296566 297214 -183991448 + L1MB2 LINE L1 4539 5195 -951 1299 252 47 70 chr4 297301 297564 -183991098 + L1MB2 LINE L1 5341 5608 -563 1847 200 0 0 chr4 297564 297864 -183990798 + AluJb SINE Alu 12 311 -1 1299 252 47 70 chr4 297864 298214 -183990448 + L1MB2 LINE L1 5608 5940 -231 23 0 0 0 chr4 299213 299236 -183989426 + AT_rich Low_complexity Low_complexity 1 23 0 733 168 37 47 chr4 299759 299785 -183988877 + L1MA3 LINE L1 6118 6143 -162 2237 112 0 3 chr4 299785 300088 -183988574 + AluSg SINE Alu 1 302 -8 733 168 37 47 chr4 300088 300251 -183988411 + L1MA3 LINE L1 6143 6305 0 257 371 41 22 chr4 302161 302428 -183986234 + L1MB2 LINE L1 7 278 -5613 302 310 180 4 chr4 302803 303048 -183985614 + L1MB2 LINE L1 369 656 -5316 723 285 88 13 chr4 303048 303475 -183985187 + L1MB2 LINE L1 903 1513 -4638 348 313 125 6 chr4 303651 303827 -183984835 + L1MB2 LINE L1 1627 1823 -4149 464 274 78 32 chr4 303917 304136 -183984526 + L1MB2 LINE L1 1816 2044 -3928 2360 87 10 13 chr4 304152 304463 -183984199 - AluY SINE Alu -1 310 1 624 284 50 27 chr4 304646 304727 -183983935 + L1MB2 LINE L1 2204 2282 -3688 186 43 0 0 chr4 304727 304750 -183983912 + (TG)n Simple_repeat Simple_repeat 2 24 0 624 284 50 27 chr4 304750 305112 -183983550 + L1MB2 LINE L1 2282 2657 -3313 2349 107 3 3 chr4 305117 305427 -183983235 + AluSp SINE Alu 1 310 -3 463 289 63 14 chr4 305507 305791 -183982871 + L1MB2 LINE L1 4373 4670 -1300 918 278 72 11 chr4 305804 306246 -183982416 + L1MB2 LINE L1 5499 5967 -28 2690 43 3 6 chr4 306617 306966 -183981696 + L1PA8 LINE L1 5805 6152 -20 2026 83 72 10 chr4 306967 307334 -183981328 + LTR7 LTR ERV1 1 450 0 571 177 24 79 chr4 307354 307481 -183981181 - L1 LINE L1 -2085 4061 3943 2312 86 14 0 chr4 307481 307772 -183980890 + AluSp SINE Alu 1 295 -18 571 177 24 79 chr4 307772 307808 -183980854 - L1 LINE L1 -2203 3943 3907 1578 207 58 50 chr4 307823 308360 -183980302 + L1MB2 LINE L1 4400 4940 -1206 1084 266 62 23 chr4 308362 308808 -183979854 + L1MB2 LINE L1 5662 6130 -41 1890 118 93 0 chr4 308808 309088 -183979574 + AluSp SINE Alu 1 306 -7 1084 266 62 23 chr4 309088 309126 -183979536 + L1MB2 LINE L1 6130 6165 -6 2270 70 0 0 chr4 309493 309800 -183978862 + AluY SINE Alu 1 307 0 2342 267 76 30 chr4 309811 311420 -183977242 + L1MA3 LINE L1 357 1859 -4176 369 173 0 13 chr4 311492 311567 -183977095 + AluJo SINE Alu 61 134 -168 1594 211 0 14 chr4 311606 311891 -183976771 + AluJb SINE Alu 1 281 -31 258 213 0 0 chr4 312118 312179 -183976483 + L1MA3 LINE L1 1969 2029 -4006 933 283 92 17 chr4 312224 312581 -183976081 + MSTD LTR MaLR 1 384 -12 407 289 66 17 chr4 312591 312878 -183975784 + L1MA3 LINE L1 2071 2371 -3663 592 111 10 20 chr4 312878 312977 -183975685 + MER4A LTR ERV1 1 98 -566 1526 117 27 94 chr4 313026 313324 -183975338 + MER4A LTR ERV1 372 649 -15 392 235 138 18 chr4 313330 313547 -183975115 + L1MA3 LINE L1 2374 2616 -3418 1188 184 28 14 chr4 313556 313774 -183974888 - AluJb SINE Alu -91 221 1 733 264 69 39 chr4 313792 314158 -183974504 - MER21B LTR ERV1 -83 848 402 1063 246 110 25 chr4 314194 314696 -183973966 + MER92B LTR ERV1 46 402 -10 3309 217 64 5 chr4 316407 317165 -183971497 + L1MA3 LINE L1 3973 4793 -1241 1891 163 7 3 chr4 317165 317459 -183971203 + AluSx SINE Alu 1 295 -17 3309 217 64 5 chr4 317459 317590 -183971072 + L1MA3 LINE L1 4793 4915 -1119 287 104 0 21 chr4 317590 317638 -183971024 + LTR22B LTR ERVK 1 47 -445 1652 104 4 24 chr4 317648 317898 -183970764 + LTR22B LTR ERVK 248 492 0 5132 177 27 19 chr4 317901 319182 -183969480 + L1MA3 LINE L1 4913 6192 -1 26 0 0 0 chr4 319182 319208 -183969454 + AT_rich Low_complexity Low_complexity 1 26 0 263 350 45 29 chr4 319231 319474 -183969188 + L1MB2 LINE L1 35 281 -5610 1997 81 78 0 chr4 319641 319912 -183968750 + AluY SINE Alu 6 297 -14 443 305 85 20 chr4 319915 320115 -183968547 + L1MB2 LINE L1 4463 4675 -1295 899 270 38 15 chr4 320117 320458 -183968204 + L1MB2 LINE L1 5499 5847 -148 558 168 50 0 chr4 320493 320612 -183968050 - L1PA13 LINE L1 -2 6161 6037 1335 281 45 16 chr4 320752 321357 -183967305 + L1MB1 LINE L1 4535 5156 -990 1886 231 91 12 chr4 321448 321834 -183966828 + L1MB1 LINE L1 5283 5744 -424 2151 186 26 7 chr4 321834 322254 -183966408 - MSTA LTR MaLR 0 428 1 1886 231 91 12 chr4 322254 322524 -183966138 + L1MB1 LINE L1 5744 5991 -177 556 324 18 77 chr4 322522 322979 -183965683 + L1M3a LINE L1 125 554 -5401 * 306 226 0 0 chr4 323121 323183 -183965479 + MER6B DNA MER2_type 3 64 -212 572 181 0 0 chr4 323233 323327 -183965335 - AluS SINE Alu -217 96 3 477 228 58 92 chr4 323332 323447 -183965215 - L1 LINE L1 -1717 4317 4200 599 186 0 64 chr4 323447 323587 -183965075 + FLAM_C SINE Alu 1 131 -2 477 228 58 92 chr4 323587 323830 -183964832 - L1 LINE L1 -1834 4200 3971 328 291 0 18 chr4 323944 324054 -183964608 - L1 LINE L1 -5149 806 699 1418 102 0 11 chr4 324062 324248 -183964414 + AluSg/x SINE Alu 103 286 -24 23 0 0 0 chr4 324255 324278 -183964384 + AT_rich Low_complexity Low_complexity 1 23 0 2591 233 50 25 chr4 324315 325196 -183963466 + L1MA9 LINE L1 4464 5366 -780 1758 199 72 47 chr4 325202 325906 -183962756 + L1MA9 LINE L1 5521 6277 -35 420 230 110 31 chr4 325944 326135 -183962527 + MER6B DNA MER2_type 4 209 -1 1751 99 119 58 chr4 326365 326658 -183962004 + AluSx SINE Alu 1 311 -1 1106 123 0 64 chr4 326685 326888 -183961774 - MER30B DNA MER1_type 0 190 1 713 71 0 0 chr4 327091 327189 -183961473 + L1PA2 LINE L1 6057 6154 -1 181 174 92 184 chr4 329177 329286 -183959376 - MIR SINE MIR -9 253 155 195 244 0 0 chr4 330173 330214 -183958448 + L2 LINE L2 3191 3231 -82 2553 144 41 0 chr4 330943 331359 -183957303 - LTR56 LTR ERV1 -12 433 1 2064 211 145 21 chr4 331828 332455 -183956207 - MER67C LTR ERV1 -5 705 1 2311 67 3 24 chr4 332612 332910 -183955752 + AluY SINE Alu 1 292 -19 385 257 82 79 chr4 333446 333800 -183954862 - MER21A LTR ERV1 -75 856 502 315 298 8 16 chr4 333820 333944 -183954718 + MER93a LTR ERV1 244 366 -36 297 230 0 0 chr4 334761 334835 -183953827 + (CA)n Simple_repeat Simple_repeat 2 75 0 23 0 0 0 chr4 334951 334974 -183953688 + AT_rich Low_complexity Low_complexity 1 23 0 626 209 71 112 chr4 334977 335273 -183953389 - MER33 DNA MER1_type -40 284 1 739 205 32 30 chr4 335479 335687 -183952975 - MER61D LTR ERV1 -17 743 338 3504 129 51 5 chr4 336353 336926 -183951736 - MER51C LTR ERV1 0 640 2 940 175 30 0 chr4 336938 337104 -183951558 - MER67C LTR ERV1 -259 451 281 2548 63 0 3 chr4 337195 337498 -183951164 - AluY SINE Alu -9 302 1 43 112 0 0 chr4 338587 338784 -183949878 + AT_rich Low_complexity Low_complexity 1 197 0 291 242 0 61 chr4 339203 339302 -183949360 - MER67C LTR ERV1 -477 233 141 2223 113 0 0 chr4 340035 340500 -183948162 - AluSg SINE Alu 0 465 1 725 287 85 7 chr4 340558 340851 -183947811 - MER21B LTR ERV1 -125 738 423 2421 97 0 3 chr4 341287 341595 -183947067 - AluSq SINE Alu -6 307 1 1901 121 3 25 chr4 341895 342177 -183946485 + AluSq SINE Alu 28 303 -10 347 214 256 0 chr4 342883 343005 -183945657 + MIR SINE MIR 32 179 -57 2218 96 4 0 chr4 343214 343535 -183945127 + AluSp SINE Alu 3 324 0 456 283 65 27 chr4 344409 344593 -183944069 - MARNA DNA Mariner -196 390 200 29098 74 8 67 chr4 345012 346201 -183942461 + L1P LINE L1 11 1267 -4879 5550 153 20 17 chr4 346201 347151 -183941511 + LTR5 LTR ERVK 17 969 0 29098 74 8 67 chr4 347151 350294 -183938368 + L1P LINE L1 1267 4092 -2054 182 319 103 69 chr4 350557 350789 -183937873 + MIR SINE MIR 14 253 -9 6393 93 4 15 chr4 351866 352357 -183936305 + L1PA14 LINE L1 4872 5367 -794 2383 95 0 0 chr4 352357 352661 -183936001 + AluY SINE Alu 2 305 -6 6393 93 4 15 chr4 352661 353464 -183935198 + L1PA14 LINE L1 5367 6161 0 9261 58 4 2 chr4 355794 357735 -183930927 - L1PA5 LINE L1 0 6154 4207 201 132 0 0 chr4 359224 359262 -183929400 + (GA)n Simple_repeat Simple_repeat 1 38 0 23 0 0 0 chr4 360515 360538 -183928124 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr4 360680 360700 -183927962 + (CAG)n Simple_repeat Simple_repeat 3 22 0 272 304 22 0 chr4 360869 360961 -183927701 - MIR SINE MIR -60 148 55 890 285 14 0 chr4 361684 361905 -183926757 - MER58A DNA MER1_type 0 224 1 282 74 56 0 chr4 362033 362087 -183926575 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 694 303 51 63 chr4 363707 364119 -183924543 - MLT1I LTR MaLR 0 409 3 318 260 0 10 chr4 364366 364558 -183924104 + (TTAGGG)n Simple_repeat Simple_repeat 1 190 0 1646 168 9 7 chr4 365244 365589 -183923073 - MER4A LTR ERV1 0 664 261 667 121 0 10 chr4 365589 365688 -183922974 - MER4A LTR ERV1 -566 98 1 4233 208 177 73 chr4 366570 367095 -183921567 - L1MC3 LINE L1 -1 7784 7315 279 219 14 14 chr4 367095 367168 -183921494 - MLT1F1 LTR MaLR -450 117 45 4233 208 177 73 chr4 367168 367665 -183920997 - L1MC3 LINE L1 -470 7315 6871 3531 208 25 62 chr4 367665 368666 -183919996 - LTR5 LTR ERVK 0 969 6 4233 208 177 73 chr4 368666 368994 -183919668 - L1MC3 LINE L1 -914 6871 6578 1757 184 36 65 chr4 368994 369439 -183919223 - MSTB1 LTR MaLR 0 432 1 4233 208 177 73 chr4 369439 369847 -183918815 - L1MC3 LINE L1 -1207 6578 5762 270 215 15 100 chr4 369994 370087 -183918575 - LTR37A LTR ERV1 -304 122 41 1612 152 98 0 chr4 370087 370351 -183918311 - AluJb SINE Alu -22 290 1 270 215 15 100 chr4 370351 370387 -183918275 - LTR37A LTR ERV1 -385 41 4 1875 189 29 11 chr4 370403 370778 -183917884 - MER31-int LTR ERV1 -696 4240 3859 1297 263 47 8 chr4 370819 371180 -183917482 - LTR10C LTR ERV1 -29 562 188 225 0 0 0 chr4 371202 371227 -183917435 + (CA)n Simple_repeat Simple_repeat 2 26 0 681 174 12 81 chr4 371299 371471 -183917191 - MER31-int LTR ERV1 -1064 3872 3713 7545 34 0 3 chr4 371572 372926 -183915736 - L1PA4 LINE L1 -3 6152 4811 2462 213 47 72 chr4 372926 373565 -183915097 - MER31-int LTR ERV1 -1207 3729 3112 2234 93 0 0 chr4 373565 373874 -183914788 - AluY SINE Alu 0 310 2 2462 213 47 72 chr4 373874 374044 -183914618 - MER31-int LTR ERV1 -1824 3112 2939 1222 214 82 55 chr4 374058 374567 -183914095 - MER31-int LTR ERV1 -2705 2231 1709 1132 154 75 143 chr4 374576 375030 -183913632 + LTR60 LTR ERV1 127 549 -37 * 4151 137 75 166 chr4 374870 377499 -183911163 + TAR1 Satellite telomeric 1 2388 -233 1409 6 11 11 chr4 377499 377679 -183910983 + (TTAGGG)n Simple_repeat Simple_repeat 1 180 0 1857 272 70 19 chr4 577694 577762 -183710900 + L1M4 LINE L1 2197 2260 -3886 2060 120 0 7 chr4 577762 578070 -183710592 + AluSx SINE Alu 2 307 -5 1857 272 70 19 chr4 578070 578692 -183709970 + L1M4 LINE L1 2260 2922 -3224 1894 140 105 79 chr4 579213 579330 -183709332 - Tigger1 DNA MER2_type -8 2410 2297 1851 173 0 7 chr4 579330 579636 -183709026 - AluJb SINE Alu -8 304 1 1894 140 105 79 chr4 579636 579668 -183708994 - Tigger1 DNA MER2_type -121 2297 2267 2131 109 0 10 chr4 579668 579971 -183708691 - AluSg SINE Alu -10 300 1 1894 140 105 79 chr4 579971 580326 -183708336 - Tigger1 DNA MER2_type -151 2267 1892 331 294 9 0 chr4 580427 580536 -183708126 + L1MEc LINE L1 636 745 -5651 281 75 0 0 chr4 580543 580583 -183708079 + Alu SINE Alu 1 40 -263 318 332 5 53 chr4 580753 580844 -183707818 + HAL1 LINE L1 1 80 -2427 2192 118 0 0 chr4 580844 581149 -183707513 + AluSg SINE Alu 1 305 -5 318 332 5 53 chr4 581149 581247 -183707415 + HAL1 LINE L1 80 181 -2326 286 261 85 39 chr4 581636 581789 -183706873 + HAL1 LINE L1 689 848 -1659 677 226 35 49 chr4 581889 582079 -183706583 - MER54B LTR ERVL -114 679 491 1851 126 10 7 chr4 582079 582372 -183706290 - AluSx SINE Alu -18 294 1 677 226 35 49 chr4 582372 582407 -183706255 - MER54B LTR ERVL -302 491 457 322 311 136 60 chr4 582808 583647 -183705015 - L1M2 LINE L1 -5578 1271 369 1370 249 68 66 chr4 584428 584530 -183704132 - L1M4 LINE L1 -876 5270 5170 1474 187 21 7 chr4 584530 584814 -183703848 + AluJo SINE Alu 1 288 -24 1370 249 68 66 chr4 584814 585494 -183703168 - L1M4 LINE L1 -976 5170 4487 707 82 21 0 chr4 585604 585701 -183702961 - AluSg/x SINE Alu -14 295 197 1761 111 0 8 chr4 585703 585947 -183702715 - AluSg SINE Alu -68 242 1 * 2033 113 7 20 chr4 585947 586247 -183702415 - AluSq SINE Alu -17 296 1 1166 131 0 17 chr4 586392 586568 -183702094 + AluJo SINE Alu 17 189 -123 726 226 0 20 chr4 586725 586871 -183701791 + AluJb SINE Alu 150 292 -20 22 70 0 0 chr4 587043 587086 -183701576 + GC_rich Low_complexity Low_complexity 1 43 0 211 272 27 34 chr4 587114 587261 -183701401 + (CCCCG)n Simple_repeat Simple_repeat 4 149 0 * 337 275 0 67 chr4 587163 587356 -183701306 + C-rich Low_complexity Low_complexity 1 180 0 22 56 0 0 chr4 587383 587419 -183701243 + GC_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr4 587441 587473 -183701189 + GC_rich Low_complexity Low_complexity 1 32 0 478 172 57 0 chr4 590691 590848 -183697814 + (CAGAGA)n Simple_repeat Simple_repeat 1 166 0 2137 184 44 0 chr4 591021 591456 -183697206 - MER54B LTR ERVL -339 454 1 344 179 0 38 chr4 591491 591597 -183697065 + HAL1 LINE L1 1029 1130 -1377 2397 88 0 0 chr4 591597 591902 -183696760 + AluSx SINE Alu 1 305 -7 237 291 63 0 chr4 591902 591981 -183696681 + HAL1 LINE L1 2049 2132 -375 2417 76 0 3 chr4 592682 592986 -183695676 - AluSg SINE Alu -7 303 1 1337 153 19 0 chr4 593096 593312 -183695350 + AluJb SINE Alu 85 304 -8 189 0 0 0 chr4 593715 593736 -183694926 + (A)n Simple_repeat Simple_repeat 1 21 0 2203 90 3 13 chr4 593740 594041 -183694621 + AluSx SINE Alu 1 298 -14 385 234 46 46 chr4 596549 596724 -183691938 + (CAGCC)n Simple_repeat Simple_repeat 1 175 0 579 176 12 18 chr4 598549 598719 -183689943 + (TCTCTG)n Simple_repeat Simple_repeat 3 171 0 353 314 45 125 chr4 599358 599491 -183689171 - L1M4 LINE L1 -2972 3174 3032 2221 106 3 0 chr4 599491 599792 -183688870 - AluSp SINE Alu -11 302 1 2022 91 60 24 chr4 599800 600098 -183688564 - AluSg SINE Alu -1 309 1 353 314 45 125 chr4 600098 600148 -183688514 - L1M4 LINE L1 -3121 3025 2973 1323 199 64 18 chr4 600148 600430 -183688232 - AluJo SINE Alu -4 298 4 353 314 45 125 chr4 600430 600707 -183687955 - L1M4 LINE L1 -3173 2973 2742 407 349 88 0 chr4 600768 600960 -183687702 + MIR SINE MIR 7 215 -47 897 204 19 0 chr4 603516 603673 -183684989 - FRAM SINE Alu -6 160 1 2150 76 38 3 chr4 603701 603991 -183684671 + AluY SINE Alu 1 300 -11 1829 87 61 4 chr4 603994 604258 -183684404 + AluSq SINE Alu 1 279 -34 418 350 154 28 chr4 605688 606051 -183682611 - L1M4 LINE L1 -787 5359 4951 2174 93 13 7 chr4 606232 606534 -183682128 - AluSp SINE Alu -1 312 9 2033 125 0 7 chr4 606544 606840 -183681822 - AluSx SINE Alu -18 294 1 951 181 43 11 chr4 606940 607128 -183681534 - L1MB3 LINE L1 -1 6182 5989 270 316 118 0 chr4 607156 607292 -183681370 + L1MB8 LINE L1 6026 6177 -1 1670 145 71 18 chr4 607945 608228 -183680434 - AluJo SINE Alu -14 298 1 1228 207 13 53 chr4 608230 608516 -183680146 + L1ME1 LINE L1 4895 5164 -982 3543 154 71 119 chr4 608516 609112 -183679550 + MER21A LTR ERV1 1 533 -398 2210 119 0 0 chr4 609112 609415 -183679247 + AluSx SINE Alu 1 303 -9 3543 154 71 119 chr4 609415 609793 -183678869 + MER21A LTR ERV1 533 928 -3 1228 207 13 53 chr4 609793 609883 -183678779 + L1ME1 LINE L1 5164 5256 -890 941 88 0 0 chr4 609884 610009 -183678653 + AluSx SINE Alu 1 125 -188 189 171 0 0 chr4 610009 610044 -183678618 + (CATATA)n Simple_repeat Simple_repeat 4 38 0 263 221 23 0 chr4 610049 610135 -183678527 + L1MC4 LINE L1 6614 6701 -1341 832 157 0 0 chr4 610136 610270 -183678392 + AluSx SINE Alu 1 134 -178 207 162 0 0 chr4 610270 610307 -183678355 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 246 218 51 0 chr4 610312 610390 -183678272 + L1MC4 LINE L1 6614 6695 -1347 1160 147 0 0 chr4 610390 610560 -183678102 + AluSx SINE Alu 123 292 -18 2175 92 0 30 chr4 610564 610868 -183677794 + AluSg SINE Alu 1 295 -15 481 154 86 8 chr4 610874 610991 -183677671 + L1ME1 LINE L1 5258 5383 -950 1103 221 24 4 chr4 611047 611301 -183677361 + Tigger3(Golem) DNA MER2_type 2771 3029 0 2010 241 52 10 chr4 611305 611914 -183676748 + L1ME1 LINE L1 5352 5986 -180 813 304 67 52 chr4 612010 612199 -183676463 + L1 LINE L1 2745 2930 -3216 2157 113 0 10 chr4 612199 612500 -183676162 + AluSg SINE Alu 1 298 -12 813 304 67 52 chr4 612500 612731 -183675931 + L1 LINE L1 2930 3171 -2975 762 310 21 7 chr4 612827 612920 -183675742 + MER7A DNA MER2_type 1 91 -2947 2147 61 40 24 chr4 612920 613216 -183675446 - AluY SINE Alu -10 301 1 1918 126 42 3 chr4 613216 613502 -183675160 - AluSx SINE Alu -15 297 1 762 310 21 7 chr4 613502 613694 -183674968 + MER7A DNA MER2_type 90 289 -57 644 354 51 60 chr4 613777 614276 -183674386 + L1 LINE L1 4208 4701 -1445 4368 157 22 1 chr4 614924 615662 -183673000 + L1MB3 LINE L1 5431 6183 0 5331 105 16 5 chr4 615667 617008 -183671654 + L1PA10 LINE L1 4724 6150 -18 2081 98 0 33 chr4 617008 617315 -183671347 - AluSq SINE Alu -16 297 1 1281 185 8 13 chr4 617517 617755 -183670907 + AluJb SINE Alu 1 237 -75 272 25 50 0 chr4 617762 617802 -183670860 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 322 381 59 23 chr4 618021 618525 -183670137 + L1 LINE L1 3081 3689 -2457 1141 309 127 35 chr4 619195 619575 -183669087 - L1ME1 LINE L1 -66 6100 5756 2542 59 0 0 chr4 619575 619880 -183668782 - AluY SINE Alu -6 305 1 1141 309 127 35 chr4 619880 620215 -183668447 - L1ME1 LINE L1 -410 5756 5319 2407 96 0 0 chr4 620215 620528 -183668134 - AluSq SINE Alu 0 313 1 627 202 0 0 chr4 620533 620637 -183668025 - FRAM SINE Alu -14 162 59 1928 134 7 3 chr4 622001 622292 -183666370 - AluJb SINE Alu -18 294 3 2252 78 0 10 chr4 623344 623639 -183665023 - AluY SINE Alu -19 292 1 617 185 92 0 chr4 623906 624025 -183664637 - FLAM_C SINE Alu -1 132 3 617 285 97 0 chr4 624156 624384 -183664278 - L1MC/D LINE L1 -586 5773 5524 2338 77 3 0 chr4 624696 624995 -183663667 - AluSx SINE Alu -12 300 1 1280 20 0 0 chr4 625013 625160 -183663502 - SVA Other Other 0 1386 1240 395 216 78 0 chr4 625163 625279 -183663383 - L1MC/D LINE L1 -817 5329 5205 1140 335 64 34 chr4 625487 625661 -183663001 - L1MC/D LINE L1 -1278 4868 4701 2392 55 3 0 chr4 625661 625952 -183662710 + AluY SINE Alu 1 292 -19 1140 335 64 34 chr4 625952 626562 -183662100 - L1MC/D LINE L1 -1445 4701 4061 2015 113 48 3 chr4 626584 626876 -183661786 + AluSx SINE Alu 1 305 -7 789 175 0 58 chr4 626889 627043 -183661619 - FRAM SINE Alu -24 152 8 734 231 95 27 chr4 627551 627772 -183660890 - AluJo SINE Alu -76 236 1 1243 271 60 17 chr4 627864 627934 -183660728 - L1MC/D LINE L1 -2211 3935 3869 528 114 13 0 chr4 627934 628013 -183660649 + MADE1 DNA Mariner 1 80 0 1243 271 60 17 chr4 628013 628478 -183660184 - L1MC/D LINE L1 -2277 3869 3377 236 368 129 21 chr4 628658 628998 -183659664 - L1MC/D LINE L1 -3010 3136 2760 310 299 17 0 chr4 629086 629203 -183659459 - L1MC/D LINE L1 -3538 2608 2490 724 213 0 7 chr4 630991 631132 -183657530 + AluJo SINE Alu 86 225 -87 716 194 8 8 chr4 631125 631259 -183657403 + AluJo/FRAM SINE Alu 163 296 -16 * 367 304 56 43 chr4 631309 631470 -183657192 + L1ME1 LINE L1 5262 5424 -2384 3678 183 56 67 chr4 631728 632206 -183656456 + Tigger1 DNA MER2_type 20 502 -1916 1631 157 27 20 chr4 632206 632499 -183656163 + AluJb SINE Alu 1 295 -17 3678 183 56 67 chr4 632499 633007 -183655655 + Tigger1 DNA MER2_type 502 995 -1423 239 207 49 37 chr4 633007 633089 -183655573 + Tigger1 DNA MER2_type 913 995 -1423 252 207 49 37 chr4 633089 633171 -183655491 + Tigger1 DNA MER2_type 913 995 -1423 2221 65 7 0 chr4 633291 633569 -183655093 + AluY SINE Alu 16 295 -16 1265 147 8 37 chr4 633571 633816 -183654846 + Tigger1 DNA MER2_type 1173 1410 -1008 291 195 26 26 chr4 637556 637633 -183651029 - MER58 DNA MER1_type -2311 109 33 266 272 20 54 chr4 638179 638326 -183650336 + (CACG)n Simple_repeat Simple_repeat 2 143 0 * 477 234 0 65 chr4 638248 638432 -183650230 + (CA)n Simple_repeat Simple_repeat 1 172 0 213 218 0 52 chr4 638493 638694 -183649968 + (CA)n Simple_repeat Simple_repeat 1 190 0 268 232 0 56 chr4 638715 639010 -183649652 + (CA)n Simple_repeat Simple_repeat 1 278 0 474 265 0 49 chr4 639025 639210 -183649452 + (CA)n Simple_repeat Simple_repeat 2 177 0 241 201 13 40 chr4 639221 639370 -183649292 + (CA)n Simple_repeat Simple_repeat 2 146 0 349 241 73 0 chr4 642290 642388 -183646274 - AluJ/FLAM SINE Alu -217 85 1 509 270 128 0 chr4 642388 642592 -183646070 - L1M4 LINE L1 -3119 3027 2798 863 259 64 4 chr4 643143 643409 -183645253 + L1ME1 LINE L1 5566 5847 -319 341 299 51 51 chr4 643409 643594 -183645068 + L1MD2 LINE L1 5973 6135 -224 2088 96 24 10 chr4 643611 643902 -183644760 - AluSp SINE Alu -17 296 2 1667 176 3 37 chr4 644519 644842 -183643820 + AluSx SINE Alu 1 312 0 1712 148 35 0 chr4 644847 645131 -183643531 + AluJo SINE Alu 6 299 -13 4268 176 79 129 chr4 645159 646944 -183641718 - pTR5 LTR ERV1 0 2438 743 2070 113 10 0 chr4 647511 647789 -183640873 + AluSx SINE Alu 1 284 -28 297 0 0 0 chr4 647789 647822 -183640840 + (CA)n Simple_repeat Simple_repeat 2 34 0 2070 113 10 0 chr4 647822 647843 -183640819 + AluSx SINE Alu 284 303 -9 2334 82 3 3 chr4 648920 649226 -183639436 - AluSc SINE Alu -3 306 1 2150 117 0 13 chr4 649232 649548 -183639114 - AluSx SINE Alu 0 312 1 23 0 0 0 chr4 653724 653747 -183634915 + AT_rich Low_complexity Low_complexity 1 23 0 2312 84 0 0 chr4 654874 655170 -183633492 - AluY SINE Alu -15 296 1 442 236 138 11 chr4 656013 656187 -183632475 - L1MC1 LINE L1 -1 6332 6137 1698 223 61 17 chr4 656303 656828 -183631834 - L1MC1 LINE L1 -382 5951 5404 265 347 35 15 chr4 658946 659145 -183629517 + L1MEd LINE L1 1306 1508 -5022 370 310 85 3 chr4 659147 659297 -183629365 + L1MEd LINE L1 1533 1696 -4844 1826 104 4 4 chr4 660344 660612 -183628050 - AluSc SINE Alu -3 306 39 1439 126 0 0 chr4 660712 660919 -183627743 + AluSq SINE Alu 91 297 -16 231 264 58 11 chr4 660931 661018 -183627644 - L1MC1 LINE L1 -2204 3942 3852 327 299 125 69 chr4 661494 662481 -183626181 + L1M2 LINE L1 369 1250 -5599 2135 99 10 6 chr4 665539 665851 -183622811 + AluSq SINE Alu 1 313 0 1006 235 40 99 chr4 665851 666297 -183622365 - Cheshire DNA MER1_type -1584 836 417 264 200 146 0 chr4 666448 666558 -183622104 - Cheshire DNA MER1_type -2216 204 79 448 184 0 0 chr4 666562 666638 -183622024 - AluJ/FLAM SINE Alu -236 76 1 442 241 25 64 chr4 667721 667754 -183620908 + L1MC5 LINE L1 7552 7585 -376 1687 166 44 0 chr4 667754 668049 -183620613 + AluJb SINE Alu 1 308 -4 442 241 25 64 chr4 668049 668218 -183620444 + L1MC5 LINE L1 7585 7746 -215 2215 86 0 35 chr4 668364 668678 -183619984 - AluSg SINE Alu -7 303 1 361 273 81 68 chr4 669176 669337 -183619325 - L1M4 LINE L1 -1575 4571 4409 1527 108 5 0 chr4 669344 669558 -183619104 + AluSg SINE Alu 1 215 -95 296 169 70 14 chr4 669666 669737 -183618925 + L1MD3 LINE L1 7921 7995 0 306 325 6 12 chr4 672880 673043 -183615619 + (CA)n Simple_repeat Simple_repeat 1 162 0 21 0 0 0 chr4 673496 673517 -183615145 + GC_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 674725 674755 -183613907 + GC_rich Low_complexity Low_complexity 1 30 0 310 382 94 9 chr4 674861 675094 -183613568 + HAL1 LINE L1 1011 1263 -1244 259 261 125 45 chr4 678367 678543 -183610119 - MLT1C LTR MaLR -269 198 9 21 57 0 0 chr4 679808 679843 -183608819 + GC_rich Low_complexity Low_complexity 1 35 0 2000 112 0 31 chr4 681631 681952 -183606710 + AluY SINE Alu 1 311 0 1370 187 100 2 chr4 681963 682347 -183606315 - MER31A LTR ERV1 -21 445 1 2351 55 3 0 chr4 682855 683147 -183605515 - AluY SINE Alu -18 293 1 512 261 252 13 chr4 683271 683585 -183605077 - L2 LINE L2 -14 3299 2911 538 107 68 10 chr4 685207 685310 -183603352 - MER34B LTR ERV1 -155 410 302 551 224 176 0 chr4 685378 685437 -183603225 + L1MC3 LINE L1 6784 6831 -954 2080 119 3 3 chr4 685437 685739 -183602923 + AluSp SINE Alu 1 302 -11 551 224 176 0 chr4 685739 685889 -183602773 + L1MC3 LINE L1 6831 7030 -755 352 133 42 0 chr4 685889 685972 -183602690 + FRAM/FAM SINE Alu 21 84 -91 335 285 60 98 chr4 686084 686319 -183602343 - L1MEc LINE L1 -3810 2572 2347 235 291 0 13 chr4 686515 686594 -183602068 + (TG)n Simple_repeat Simple_repeat 1 78 0 451 305 110 54 chr4 686752 687455 -183601207 - L1MEc LINE L1 -4638 1895 999 1779 119 8 0 chr4 688093 688345 -183600317 + AluSx SINE Alu 40 293 -19 180 233 50 67 chr4 688579 688639 -183600023 + L2 LINE L2 3204 3262 -10 309 292 62 10 chr4 690261 690357 -183598305 - L1MCa LINE L1 -3102 3324 3224 211 200 0 0 chr4 690361 690396 -183598266 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1103 258 36 32 chr4 690428 690502 -183598160 - L1MCa LINE L1 -3212 3214 3142 1600 114 0 5 chr4 690502 690722 -183597940 + AluSg SINE Alu 1 219 -91 1103 258 36 32 chr4 690722 691116 -183597546 - L1MCa LINE L1 -3284 3142 2744 340 315 152 16 chr4 691330 691587 -183597075 + MLT1E LTR MaLR 301 592 -1 515 327 97 4 chr4 691600 691878 -183596784 - L1MCa LINE L1 -4002 2605 2302 402 304 57 53 chr4 691911 692174 -183596488 - L1MCa LINE L1 -4837 1591 1275 846 99 0 0 chr4 697687 697798 -183590864 + AluSp SINE Alu 1 111 -202 1592 130 53 37 chr4 698156 698455 -183590207 - AluJo SINE Alu -8 304 1 266 195 134 12 chr4 698582 698664 -183589998 + MER68 LTR ERV1 60 151 -411 502 265 0 32 chr4 699400 699585 -183589077 + (CA)n Simple_repeat Simple_repeat 1 179 0 * 510 318 11 19 chr4 699537 699965 -183588697 + (CACG)n Simple_repeat Simple_repeat 1 424 0 416 326 0 27 chr4 699946 700130 -183588532 + (CA)n Simple_repeat Simple_repeat 1 179 0 * 339 365 0 0 chr4 700207 700385 -183588277 + (CA)n Simple_repeat Simple_repeat 1 178 0 320 234 124 29 chr4 702450 702587 -183586075 + MER77 LTR ERV1 62 211 -394 418 293 55 0 chr4 702609 702790 -183585872 + MER77 LTR ERV1 407 597 -8 1982 112 3 39 chr4 703340 703652 -183585010 - AluSx SINE Alu -9 303 3 711 133 0 0 chr4 703654 703759 -183584903 - AluSg/x SINE Alu -8 301 197 2159 79 7 0 chr4 707094 707411 -183581251 + AluSg SINE Alu 1 319 0 1768 136 3 29 chr4 708373 708681 -183579981 + AluJo SINE Alu 1 300 -12 207 315 0 0 chr4 708704 708758 -183579904 + GA-rich Low_complexity Low_complexity 6 59 0 331 202 20 50 chr4 709968 710067 -183578595 + L1MC2 LINE L1 6240 6335 -9 1964 84 0 15 chr4 710072 710335 -183578327 + AluSc SINE Alu 15 273 -36 2313 75 0 3 chr4 710973 711268 -183577394 + AluSx SINE Alu 1 294 -18 256 262 0 16 chr4 713193 713254 -183575408 + GA-rich Low_complexity Low_complexity 3 62 0 2144 102 3 7 chr4 714350 714654 -183574008 + AluSx SINE Alu 1 303 -9 1537 167 30 13 chr4 714722 715021 -183573641 + AluJb SINE Alu 3 306 -6 329 313 123 20 chr4 715205 715400 -183573262 + L1ME1 LINE L1 5263 5477 -882 2491 147 159 16 chr4 717200 717746 -183570916 + MER51A LTR ERV1 2 625 -9 467 213 48 69 chr4 717830 718182 -183570480 + (CACGC)n Simple_repeat Simple_repeat 1 344 0 789 174 8 0 chr4 720780 720912 -183567750 + AluJo SINE Alu 3 135 -177 1399 181 72 22 chr4 720912 721189 -183567473 + AluJo SINE Alu 1 291 -21 1721 91 0 29 chr4 721301 721543 -183567119 - AluSq SINE Alu -78 235 1 212 296 0 34 chr4 726707 726883 -183561779 + (CA)n Simple_repeat Simple_repeat 1 170 0 429 309 85 15 chr4 727630 727907 -183560755 + L1ME1 LINE L1 3138 3779 -2367 1179 293 20 8 chr4 728004 728396 -183560266 + L1ME1 LINE L1 3944 4340 -1806 1728 240 88 11 chr4 728400 728600 -183560062 + L1ME1 LINE L1 5075 5258 -908 1528 141 148 0 chr4 728600 728856 -183559806 - AluJb SINE Alu -6 296 3 1728 240 88 11 chr4 728856 729469 -183559193 + L1ME1 LINE L1 5258 5943 -223 230 328 25 42 chr4 729817 730058 -183558604 + L1ME1 LINE L1 5841 6077 -89 26 0 0 0 chr4 730141 730167 -183558495 + AT_rich Low_complexity Low_complexity 1 26 0 1083 252 232 2 chr4 730229 730773 -183557889 + L1MD1 LINE L1 3527 4195 -1951 450 186 0 21 chr4 730779 730876 -183557786 + L1MA8 LINE L1 6026 6120 -171 483 221 31 0 chr4 730881 731008 -183557654 + L1MA8 LINE L1 6157 6287 -4 570 315 89 33 chr4 731729 732198 -183556464 + L2 LINE L2 2776 3279 -34 909 144 14 14 chr4 732218 732364 -183556298 + FRAM SINE Alu 13 158 -18 2193 87 10 16 chr4 732370 732679 -183555983 + AluY SINE Alu 5 311 0 2397 66 0 3 chr4 732912 733214 -183555448 - AluSc SINE Alu -8 301 1 793 217 120 77 chr4 733338 733467 -183555195 + L1MD1 LINE L1 4725 4847 -1395 2187 100 30 0 chr4 733467 733766 -183554896 - AluSx SINE Alu -4 308 1 793 217 120 77 chr4 733766 734408 -183554254 + L1MD1 LINE L1 4847 5520 -722 921 221 142 40 chr4 734411 734605 -183554057 + MLT1B LTR MaLR 1 174 -216 2245 103 0 0 chr4 734605 734907 -183553755 + AluSx SINE Alu 1 302 -10 921 221 142 40 chr4 734907 735065 -183553597 + MLT1B LTR MaLR 174 389 -1 1207 210 73 6 chr4 735066 735380 -183553282 + L1MD1 LINE L1 5527 5861 -381 416 263 226 29 chr4 735381 735655 -183553007 + L1MD1 LINE L1 5915 6242 0 1875 141 0 21 chr4 735759 736049 -183552613 + AluJo SINE Alu 1 284 -28 22 0 0 0 chr4 736194 736216 -183552446 + AT_rich Low_complexity Low_complexity 1 22 0 1192 217 25 39 chr4 736251 736275 -183552387 + L1ME LINE L1 5369 5392 -772 2019 108 30 3 chr4 736275 736570 -183552092 + AluSx SINE Alu 1 303 -9 1192 217 25 39 chr4 736570 736905 -183551757 + L1ME LINE L1 5392 5723 -441 607 185 15 11 chr4 736969 737105 -183551557 + MSTA LTR MaLR 3 141 -234 229 245 0 0 chr4 737272 737325 -183551337 + MSTA LTR MaLR 129 181 -247 456 219 0 0 chr4 737362 737458 -183551204 + AluSg/x SINE Alu 209 304 -6 1338 158 113 34 chr4 737934 738262 -183550400 + MLT1A1 LTR MaLR 12 365 0 483 352 82 9 chr4 738754 738987 -183549675 + MIR SINE MIR 4 253 -9 221 212 0 30 chr4 739188 739254 -183549408 + (CCGCT)n Simple_repeat Simple_repeat 4 67 0 2203 104 3 0 chr4 739516 739805 -183548857 - AluSx SINE Alu -22 290 1 779 191 19 13 chr4 739831 739988 -183548674 + FRAM SINE Alu 1 158 -18 2280 97 7 0 chr4 740200 740509 -183548153 - AluSp SINE Alu -2 311 1 600 195 55 16 chr4 741020 741148 -183547514 + FLAM_A SINE Alu 1 133 0 770 206 41 85 chr4 741223 741539 -183547123 + MER46C DNA MER2_type 20 321 -17 427 284 147 47 chr4 744636 744666 -183543996 + MER102b DNA MER1_type 86 112 -1316 1895 59 134 0 chr4 744666 744943 -183543719 + AluSq SINE Alu 2 312 0 427 284 147 47 chr4 744943 745141 -183543521 + MER102b DNA MER1_type 112 340 -1 257 114 286 0 chr4 745252 745322 -183543340 + LTR54 LTR ERV1 391 480 -30 801 339 120 48 chr4 745564 746500 -183542162 - L2 LINE L2 -1010 2304 1302 1677 201 143 55 chr4 746796 747507 -183541155 + L1MC2 LINE L1 2320 3086 -3060 1340 123 0 47 chr4 747527 747738 -183540924 + AluSx SINE Alu 35 235 -77 3631 201 91 136 chr4 747760 748114 -183540548 + L1MC2 LINE L1 3073 3441 -2705 2136 107 0 10 chr4 748114 748413 -183540249 + AluSc SINE Alu 1 296 -13 3631 201 91 136 chr4 748413 748503 -183540159 + L1MC2 LINE L1 3441 3534 -2612 835 79 44 0 chr4 748503 748617 -183540045 + L1MA2 LINE L1 6186 6304 0 3631 201 91 136 chr4 748617 748722 -183539940 + L1MC2 LINE L1 3534 3642 -2504 2085 132 3 0 chr4 748722 749017 -183539645 + AluSq SINE Alu 1 296 -17 3631 201 91 136 chr4 749017 749662 -183539000 + L1MC2 LINE L1 3642 4315 -1831 2271 106 0 0 chr4 749662 749963 -183538699 + AluSx SINE Alu 1 301 -11 3631 201 91 136 chr4 749963 750456 -183538206 + L1MC2 LINE L1 4315 4765 -1381 561 204 0 0 chr4 750456 750554 -183538108 + FLAM_A SINE Alu 1 98 -44 3631 201 91 136 chr4 750554 750737 -183537925 + L1MC2 LINE L1 4765 4955 -1191 1137 67 0 0 chr4 750739 750874 -183537788 + AluSp SINE Alu 1 135 -178 2290 106 0 0 chr4 750874 751175 -183537487 + AluSx SINE Alu 1 301 -11 501 235 137 0 chr4 751180 751363 -183537299 + L1MC2 LINE L1 4958 5165 -981 2160 176 46 18 chr4 751395 751607 -183537055 + L1MC2 LINE L1 5753 5958 -386 2263 96 3 0 chr4 751607 751909 -183536753 + AluSq SINE Alu 1 303 -10 2160 176 46 18 chr4 751909 752166 -183536496 + L1MC2 LINE L1 5958 6240 -104 2267 89 0 0 chr4 752166 752490 -183536172 + AluSg SINE Alu 1 324 0 2160 176 46 18 chr4 752490 752518 -183536144 + L1MC2 LINE L1 6240 6266 -78 2210 101 7 3 chr4 752536 752833 -183535829 + AluSq SINE Alu 1 298 -15 441 204 0 0 chr4 755300 755437 -183533225 + (TG)n Simple_repeat Simple_repeat 1 137 0 219 177 0 0 chr4 755465 755527 -183533135 + (TG)n Simple_repeat Simple_repeat 2 63 0 243 0 0 0 chr4 756389 756416 -183532246 + (TG)n Simple_repeat Simple_repeat 1 27 0 252 200 0 0 chr4 756458 756518 -183532144 + (CA)n Simple_repeat Simple_repeat 1 60 0 305 360 81 37 chr4 756943 757315 -183531347 + L1MDa LINE L1 1271 1610 -1291 34 42 0 0 chr4 757319 757367 -183531295 + GC_rich Low_complexity Low_complexity 1 48 0 201 121 0 0 chr4 757745 757778 -183530884 + (CTG)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr4 757786 757807 -183530855 + GC_rich Low_complexity Low_complexity 1 21 0 195 235 0 0 chr4 760008 760059 -183528603 + G-rich Low_complexity Low_complexity 2 52 0 241 324 20 10 chr4 760372 760474 -183528188 + (CGTG)n Simple_repeat Simple_repeat 1 103 0 228 335 0 58 chr4 760427 760615 -183528047 + (TG)n Simple_repeat Simple_repeat 2 178 0 * 211 366 0 17 chr4 760737 760909 -183527753 + (TG)n Simple_repeat Simple_repeat 1 169 0 183 42 0 0 chr4 760960 760984 -183527678 + (TG)n Simple_repeat Simple_repeat 2 25 0 264 120 0 0 chr4 761177 761227 -183527435 + (TG)n Simple_repeat Simple_repeat 2 51 0 2125 77 42 0 chr4 763347 763632 -183525030 - AluSx SINE Alu -13 299 3 256 178 27 0 chr4 765139 765212 -183523450 + (TG)n Simple_repeat Simple_repeat 2 76 0 253 83 0 0 chr4 769570 769618 -183519044 - L1PA2 LINE L1 0 6155 6108 200 187 0 13 chr4 770676 770751 -183517911 + (CGGG)n Simple_repeat Simple_repeat 3 76 0 22 35 0 0 chr4 774771 774800 -183513862 + GC_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4 774908 774931 -183513731 + GC_rich Low_complexity Low_complexity 1 23 0 297 0 0 0 chr4 776621 776654 -183512008 + (TCTCCC)n Simple_repeat Simple_repeat 5 37 0 6715 48 2 154 chr4 776660 777838 -183510824 + SVA Other Other 50 1047 -339 471 266 21 7 chr4 777980 778123 -183510539 - MLT1A2 LTR MaLR 0 374 230 1096 228 87 3 chr4 778167 778513 -183510149 + MLT1C LTR MaLR 3 377 -90 296 373 32 0 chr4 778503 778629 -183510033 + MER82 DNA MER2_type 516 645 -8 * 928 81 0 0 chr4 778991 779114 -183509548 - AluSp/q SINE Alu -16 297 175 217 230 13 0 chr4 779226 779378 -183509284 + (CA)n Simple_repeat Simple_repeat 2 155 0 202 217 0 17 chr4 779391 779451 -183509211 + (CCCA)n Simple_repeat Simple_repeat 3 61 0 316 195 20 23 chr4 779453 779712 -183508950 + (CA)n Simple_repeat Simple_repeat 1 258 0 364 266 12 0 chr4 779731 779900 -183508762 + (CA)n Simple_repeat Simple_repeat 2 172 0 236 284 15 0 chr4 783605 783672 -183504990 + MIR SINE MIR 82 149 -59 2266 87 3 3 chr4 784538 784838 -183503824 + AluSg SINE Alu 1 300 -10 252 255 0 32 chr4 785876 785970 -183502692 + C-rich Low_complexity Low_complexity 1 91 0 736 153 0 0 chr4 791345 791456 -183497206 + FLAM_C SINE Alu 1 111 -32 1350 118 24 0 chr4 791462 791673 -183496989 - AluY SINE Alu -12 299 84 278 125 0 0 chr4 791674 791714 -183496948 - AluY SINE Alu -52 249 210 183 333 0 0 chr4 792253 792298 -183496364 + L2 LINE L2 3225 3269 -3 2050 125 0 7 chr4 798511 798814 -183489848 - AluJb SINE Alu -11 301 1 1718 234 96 71 chr4 799178 799332 -183489330 - L1ME1 LINE L1 -75 6091 5942 2040 114 7 0 chr4 799332 799622 -183489040 - AluSx SINE Alu -20 292 1 1718 234 96 71 chr4 799622 800081 -183488581 - L1ME1 LINE L1 -224 5942 5449 2202 114 0 0 chr4 800081 800387 -183488275 + AluSx SINE Alu 1 306 -6 1718 234 96 71 chr4 800387 800693 -183487969 - L1ME1 LINE L1 -717 5449 5152 2304 110 0 0 chr4 800693 801001 -183487661 + AluSx SINE Alu 1 308 -4 1454 193 72 34 chr4 801004 801268 -183487394 + L1ME LINE L1 4664 4951 -1195 2225 93 0 26 chr4 801268 801578 -183487084 + AluSc SINE Alu 1 302 -7 1454 193 72 34 chr4 801578 801727 -183486935 + L1ME LINE L1 4951 5093 -1053 615 137 154 17 chr4 801728 801845 -183486817 - FLAM_C SINE Alu 0 133 1 2009 119 11 0 chr4 801897 802183 -183486479 + AluSx SINE Alu 1 289 -23 524 299 60 9 chr4 803546 803763 -183484899 + L1ME LINE L1 5359 5586 -578 536 15 0 0 chr4 803763 803828 -183484834 - AluY SINE Alu -10 300 236 22 35 0 0 chr4 804112 804141 -183484521 + GC_rich Low_complexity Low_complexity 1 29 0 403 306 177 23 chr4 806575 806875 -183481787 - L2 LINE L2 -254 3059 2806 2093 67 0 4 chr4 806875 807143 -183481519 - AluY SINE Alu -3 308 42 403 306 177 23 chr4 807143 807379 -183481283 - L2 LINE L2 -507 2806 2421 261 266 6 51 chr4 808660 808818 -183479844 + G-rich Low_complexity Low_complexity 5 155 0 633 175 79 16 chr4 810732 810759 -183477903 - AluJo/FRAM SINE Alu -14 298 274 2365 74 3 0 chr4 810759 811056 -183477606 + AluSg SINE Alu 1 298 -12 633 175 79 16 chr4 811056 811154 -183477508 - AluJo/FRAM SINE Alu -38 274 165 948 178 12 0 chr4 811166 811335 -183477327 - AluJo SINE Alu -21 291 121 2053 102 3 22 chr4 811364 811678 -183476984 + AluSc SINE Alu 1 308 -1 582 279 177 42 chr4 811679 811715 -183476947 - MER69 DNA AcHobo -64 2462 2432 2049 116 3 7 chr4 811715 812016 -183476646 + AluSx SINE Alu 1 300 -12 2350 84 0 3 chr4 812016 812327 -183476335 + AluSg SINE Alu 1 310 0 582 279 177 42 chr4 812327 812877 -183475785 - MER69 DNA AcHobo -93 2433 1796 357 227 84 17 chr4 813308 813427 -183475235 - MER74B LTR ERVL 0 622 496 259 194 65 0 chr4 813652 813714 -183474948 - MER74B LTR ERVL -483 139 74 2397 76 0 0 chr4 813714 814015 -183474647 + AluSq SINE Alu 1 301 -12 340 169 26 13 chr4 814170 814247 -183474415 + MER107 DNA MER1_type 71 148 -49 439 336 38 15 chr4 814318 814583 -183474079 + HERVL74 LTR ERVL 1671 1941 -3744 383 123 0 0 chr4 814660 814725 -183473937 + HERVL74 LTR ERVL 2096 2160 -3525 1511 164 17 40 chr4 814740 814882 -183473780 + AluJb SINE Alu 1 145 -167 180 0 0 0 chr4 814882 814902 -183473760 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 1511 164 17 40 chr4 814902 815057 -183473605 + AluJb SINE Alu 145 291 -21 2410 218 60 35 chr4 815060 815227 -183473435 + HERVL74 LTR ERVL 2241 2402 -3283 2332 73 0 13 chr4 815227 815529 -183473133 - AluY SINE Alu -13 298 1 2410 218 60 35 chr4 815529 816165 -183472497 + HERVL74 LTR ERVL 2402 3064 -2621 362 291 52 23 chr4 816250 816422 -183472240 - MLT1D LTR MaLR -264 241 65 1576 216 138 12 chr4 816618 817157 -183471505 + MER39B LTR ERV1 1 649 -4 2305 100 0 0 chr4 817235 817534 -183471128 - AluSx SINE Alu -13 299 1 225 228 0 13 chr4 817567 817646 -183471016 - L1MB8 LINE L1 -4 6174 6097 534 250 83 74 chr4 817668 817964 -183470698 - L1MD3 LINE L1 0 8042 7770 1851 119 93 0 chr4 817964 818242 -183470420 + AluSx SINE Alu 7 310 -2 534 250 83 74 chr4 818242 818370 -183470292 - L1MD3 LINE L1 -272 7770 7645 333 314 32 16 chr4 818899 819023 -183469639 - L1ME LINE L1 -5932 138 13 1440 224 13 19 chr4 819323 819631 -183469031 - AluJo SINE Alu -6 306 1 1150 142 29 0 chr4 819705 819909 -183468753 + MER2 DNA MER2_type 1 210 -135 242 172 52 0 chr4 819948 820006 -183468656 + MER2 DNA MER2_type 280 340 -5 821 183 0 0 chr4 820054 820196 -183468466 + AluSg/x SINE Alu 169 310 0 381 329 17 69 chr4 823340 823422 -183465240 + L1ME1 LINE L1 5776 5861 -305 1636 170 47 55 chr4 823422 823786 -183464876 - THE1B LTR MaLR 0 364 4 381 329 17 69 chr4 823786 823934 -183464728 + L1ME1 LINE L1 5861 5994 -172 1433 140 131 44 chr4 825169 825470 -183463192 + THE1C LTR MaLR 1 274 -101 2260 70 3 26 chr4 825470 825772 -183462890 - AluY SINE Alu -16 295 1 243 0 0 0 chr4 825772 825799 -183462863 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1967 105 3 47 chr4 825799 826095 -183462567 - AluSg SINE Alu -27 283 1 1433 140 131 44 chr4 826095 826134 -183462528 + THE1C LTR MaLR 273 373 -2 324 237 144 17 chr4 826434 826485 -183462177 + L1MEc LINE L1 55 98 -6298 2081 124 0 3 chr4 826485 826783 -183461879 - AluSx SINE Alu -15 297 1 324 237 144 17 chr4 826783 826849 -183461813 + L1MEc LINE L1 98 187 -6209 3228 260 81 76 chr4 827089 827209 -183461453 + L1MEc LINE L1 1732 1850 -4365 1703 152 27 14 chr4 827209 827506 -183461156 + AluJo SINE Alu 12 312 0 3228 260 81 76 chr4 827506 828103 -183460559 + L1MEc LINE L1 1850 2443 -3772 2472 71 0 0 chr4 828103 828413 -183460249 + AluY SINE Alu 1 310 -1 3228 260 81 76 chr4 828413 829927 -183458735 + L1MEc LINE L1 2443 3949 -2266 1694 190 88 41 chr4 829927 830338 -183458324 + MSTB1 LTR MaLR 2 431 -1 2087 116 3 3 chr4 830346 830640 -183458022 + AluSq SINE Alu 1 294 -19 3228 260 81 76 chr4 830640 831226 -183457436 + L1MEc LINE L1 3955 4569 -1646 2120 99 7 0 chr4 831226 831518 -183457144 - AluSx SINE Alu -18 294 1 3228 260 81 76 chr4 831518 832000 -183456662 + L1MEc LINE L1 4569 5047 -1168 779 306 65 44 chr4 833253 833737 -183454925 - L1MB7 LINE L1 -9 6165 5676 260 267 13 20 chr4 836226 836376 -183452286 + CT-rich Low_complexity Low_complexity 2 150 0 318 366 57 60 chr4 841422 841687 -183446975 + HAL1 LINE L1 1013 1276 -1231 28 29 0 0 chr4 844287 844322 -183444340 + AT_rich Low_complexity Low_complexity 1 35 0 2274 56 3 11 chr4 845642 845928 -183442734 - AluY SINE Alu -27 284 1 2222 105 0 0 chr4 845928 846222 -183442440 - AluSg SINE Alu -16 294 1 819 234 148 10 chr4 846225 846411 -183442251 - L1MEc LINE L1 -4347 2049 1890 1787 117 0 0 chr4 846411 846658 -183442004 + AluSx SINE Alu 48 294 -18 819 234 148 10 chr4 846658 846761 -183441901 - L1MEc LINE L1 -4506 1890 1720 621 269 72 46 chr4 846814 846984 -183441678 - L1MEc LINE L1 -5107 1289 1125 2192 104 0 0 chr4 846984 847273 -183441389 - AluSx SINE Alu -23 289 1 621 269 72 46 chr4 847273 847492 -183441170 - L1MEc LINE L1 -5271 1125 890 1503 268 84 37 chr4 847629 847723 -183440939 - L1MEc LINE L1 -5424 972 884 1572 131 0 4 chr4 847723 847952 -183440710 - AluSq SINE Alu -85 228 1 1503 268 84 37 chr4 847952 848162 -183440500 - L1MEc LINE L1 -5512 884 685 1641 181 7 0 chr4 848162 848450 -183440212 - AluJb SINE Alu -22 290 1 1503 268 84 37 chr4 848450 848846 -183439816 - L1MEc LINE L1 -5711 685 238 318 302 52 0 chr4 851389 851505 -183437157 + MLT1A1 LTR MaLR 19 140 -225 262 288 55 0 chr4 852337 852500 -183436162 + (GTGTG)n Simple_repeat Simple_repeat 5 176 0 396 0 0 0 chr4 853986 854030 -183434632 + (TG)n Simple_repeat Simple_repeat 1 44 0 261 0 0 0 chr4 854075 854104 -183434558 + (TG)n Simple_repeat Simple_repeat 2 30 0 279 0 0 0 chr4 854140 854171 -183434491 + (TG)n Simple_repeat Simple_repeat 2 32 0 186 43 0 0 chr4 854209 854232 -183434430 + (TG)n Simple_repeat Simple_repeat 2 24 0 260 89 0 22 chr4 854266 854311 -183434351 + (TG)n Simple_repeat Simple_repeat 1 44 0 1832 173 7 0 chr4 855185 855486 -183433176 - AluJb SINE Alu -4 308 6 2198 105 20 0 chr4 855490 855794 -183432868 - AluSg SINE Alu 0 310 1 997 227 95 36 chr4 856087 856479 -183432183 - L1M3 LINE L1 -465 5715 5285 477 193 0 11 chr4 856502 856590 -183432072 - AluSg/x SINE Alu -26 284 198 433 211 13 0 chr4 856589 856665 -183431997 - AluJo SINE Alu -151 161 85 * 890 73 0 0 chr4 856766 856876 -183431786 - AluSq/x SINE Alu -203 110 1 200 328 160 0 chr4 863694 863813 -183424849 + MIR SINE MIR 68 205 -57 206 322 0 0 chr4 867050 867140 -183421522 + C-rich Low_complexity Low_complexity 1 90 0 2411 50 3 10 chr4 868478 868776 -183419886 - AluY SINE Alu -15 296 1 229 282 91 9 chr4 869380 869490 -183419172 - L1MD1 LINE L1 -1 6241 6123 1870 152 50 19 chr4 873574 873937 -183414725 - THE1C LTR MaLR -1 374 1 1485 112 0 5 chr4 874762 874968 -183413694 - AluSg/x SINE Alu -21 291 87 361 83 0 0 chr4 876474 876522 -183412140 + THE1C LTR MaLR 1 48 -327 2376 111 42 11 chr4 876544 876897 -183411765 + THE1B LTR MaLR 1 364 0 273 358 57 0 chr4 877494 877617 -183411045 + Tigger8 DNA MER2_type 170 299 -367 258 181 96 12 chr4 877710 877793 -183410869 + Tigger8 DNA MER2_type 434 523 -143 786 239 84 47 chr4 882272 882485 -183406177 + MER58A DNA MER1_type 1 221 -3 2143 88 14 3 chr4 882597 882894 -183405768 + AluSp SINE Alu 1 300 -13 543 222 50 14 chr4 884193 884349 -183404313 + MER74A LTR ERVL 23 239 -383 263 258 82 21 chr4 884442 884539 -183404123 + MER74B LTR ERVL 512 614 -8 2307 77 10 16 chr4 884627 884939 -183403723 + AluSp SINE Alu 1 310 -3 301 261 91 0 chr4 885800 885888 -183402774 + L1M4 LINE L1 69 164 -6695 341 197 13 0 chr4 885958 886034 -183402628 + L1P LINE L1 3714 3790 -2356 466 285 100 43 chr4 886464 886917 -183401745 + L1M4 LINE L1 1282 1728 -5219 * 3734 215 23 85 chr4 886902 888148 -183400514 + L1M4 LINE L1 4410 5578 -1379 421 205 49 8 chr4 888118 888240 -183400422 + L1MC1 LINE L1 2003 2129 -4830 * 2104 95 54 0 chr4 888243 888539 -183400123 + AluSx SINE Alu 1 312 0 1011 150 24 0 chr4 888539 888706 -183399956 + AluJb SINE Alu 134 304 -8 324 249 89 35 chr4 888718 888887 -183399775 + L1MC1 LINE L1 2273 2450 -4688 413 295 59 56 chr4 888890 889229 -183399433 + L1MC1 LINE L1 2528 2867 -4271 862 164 96 82 chr4 889229 889448 -183399214 - MLT1A2 LTR MaLR 0 374 153 3012 199 38 9 chr4 889467 890124 -183398538 - L1MB3 LINE L1 -30 6153 5478 1389 150 86 29 chr4 890286 890566 -183398096 - AluJb SINE Alu -16 296 1 820 133 55 0 chr4 890566 890694 -183397968 - AluSq/x SINE Alu -178 135 1 863 157 21 0 chr4 890696 890836 -183397826 - FRAM SINE Alu -17 159 17 1731 188 65 82 chr4 890849 890904 -183397758 - L1MB3 LINE L1 -697 5474 5420 771 197 0 0 chr4 890904 891036 -183397626 - FLAM_A SINE Alu -1 132 1 1731 188 65 82 chr4 891036 891148 -183397514 - L1MB3 LINE L1 -751 5420 5308 1704 173 3 10 chr4 891148 891443 -183397219 - AluJb SINE Alu -17 295 3 1731 188 65 82 chr4 891443 891890 -183396772 - L1MB3 LINE L1 -863 5308 4873 553 163 206 0 chr4 891908 892049 -183396613 - MLT1A2 LTR MaLR -220 170 1 671 242 55 19 chr4 892061 892351 -183396311 + L1MC1 LINE L1 2835 3133 -3824 * 1147 246 55 25 chr4 892342 892397 -183396265 + L1MC1 LINE L1 5162 5214 -1743 2026 124 3 13 chr4 892397 892704 -183395958 + AluSx SINE Alu 1 304 -8 1147 246 55 25 chr4 892704 893082 -183395580 + L1MC1 LINE L1 5214 5608 -1349 300 340 123 0 chr4 893100 893262 -183395400 - L1MEc LINE L1 -4016 2201 2020 757 292 79 17 chr4 893296 893649 -183395013 - L1MEc LINE L1 -4432 1964 1590 651 270 77 123 chr4 893672 893740 -183394922 + L1MC4 LINE L1 6885 6955 -853 1976 143 0 10 chr4 893740 894040 -183394622 + AluSx SINE Alu 1 297 -15 651 270 77 123 chr4 894040 894752 -183393910 + L1MC4 LINE L1 6955 7629 -179 457 254 71 56 chr4 895558 895755 -183392907 + L1MC4 LINE L1 7841 8040 -2 30 27 0 0 chr4 895827 895864 -183392798 + AT_rich Low_complexity Low_complexity 1 37 0 27 49 0 0 chr4 895903 895944 -183392718 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr4 895983 896004 -183392658 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr4 896051 896083 -183392579 + AT_rich Low_complexity Low_complexity 1 32 0 5873 143 45 22 chr4 896221 897398 -183391264 + L1MC1 LINE L1 5963 7144 0 195 346 28 60 chr4 898589 898771 -183389891 + L2 LINE L2 3133 3308 -5 191 267 67 0 chr4 899767 899842 -183388820 + L2 LINE L2 1705 1784 -1530 455 214 23 110 chr4 900018 900082 -183388580 + LTR37A LTR ERV1 260 328 -98 1961 178 103 0 chr4 900082 900470 -183388192 - MSTA LTR MaLR 0 428 1 455 214 23 110 chr4 900470 900497 -183388165 + LTR37A LTR ERV1 328 356 -70 1500 162 58 7 chr4 900497 900775 -183387887 - AluJo SINE Alu -20 292 1 455 214 23 110 chr4 900775 900855 -183387807 + LTR37A LTR ERV1 356 417 -9 888 193 119 30 chr4 901578 901780 -183386882 + MER58A DNA MER1_type 1 220 -4 1986 101 0 7 chr4 901783 902086 -183386576 + AluSg SINE Alu 23 310 0 920 123 0 0 chr4 902203 902333 -183386329 - FLAM_C SINE Alu 0 143 14 222 309 73 0 chr4 902897 902965 -183385697 + MIR SINE MIR 156 228 -34 417 281 10 0 chr4 905021 905117 -183383545 - MLT1K LTR MaLR -264 324 228 2528 196 38 108 chr4 905118 905971 -183382691 - MER54B LTR ERVL 0 793 1 417 162 40 0 chr4 905972 906046 -183382616 - MLT1K LTR MaLR -358 230 154 759 235 0 47 chr4 906783 906953 -183381709 + FRAM SINE Alu 1 162 -4 208 139 0 28 chr4 906956 906992 -183381670 + (GGAAA)n Simple_repeat Simple_repeat 1 35 0 294 373 83 0 chr4 907425 907618 -183381044 + L2 LINE L2 3094 3302 -11 2111 86 18 0 chr4 908174 908489 -183380173 + AluSx SINE Alu 1 320 0 316 326 31 23 chr4 908626 908755 -183379907 + L1MEc LINE L1 1277 1406 -4990 2190 105 3 10 chr4 908759 909064 -183379598 - AluSp SINE Alu -10 303 1 350 228 13 0 chr4 909114 909193 -183379469 - MER58 DNA MER1_type -1 2419 2340 1915 142 13 3 chr4 909261 909564 -183379098 + AluJb SINE Alu 1 306 -6 441 225 6 66 chr4 911418 911661 -183377001 + G-rich Low_complexity Low_complexity 1 228 0 288 0 0 0 chr4 911686 911718 -183376944 + (TAA)n Simple_repeat Simple_repeat 3 34 0 621 105 175 18 chr4 911764 911878 -183376784 + FLAM_C SINE Alu 1 132 -1 342 265 11 54 chr4 911997 912182 -183376480 + G-rich Low_complexity Low_complexity 4 180 0 1908 124 90 37 chr4 912341 912695 -183375967 + THE1C LTR MaLR 1 373 -2 9807 132 24 40 chr4 912699 914303 -183374359 + THE1C-int LTR MaLR 3 1580 0 1906 131 81 36 chr4 914303 914662 -183374000 + THE1C LTR MaLR 1 375 0 201 304 25 13 chr4 914666 914745 -183373917 + (CGGGA)n Simple_repeat Simple_repeat 4 83 0 * 263 286 40 34 chr4 914692 914867 -183373795 + (GGATG)n Simple_repeat Simple_repeat 4 179 0 963 161 11 5 chr4 917874 918060 -183370602 - Charlie1 DNA MER1_type -4 2757 2571 393 235 49 49 chr4 919556 919739 -183368923 + L1ME3A LINE L1 5096 5278 -868 2204 71 0 4 chr4 922010 922277 -183366385 + AluY SINE Alu 1 266 -45 2238 100 0 17 chr4 922485 922786 -183365876 + AluSx SINE Alu 17 312 0 216 345 56 39 chr4 923288 923520 -183365142 + MIR SINE MIR 8 243 -19 471 350 90 8 chr4 923847 924113 -183364549 + L1MEc LINE L1 1529 1816 -4580 2084 133 7 3 chr4 925085 925386 -183363276 - AluSx SINE Alu -10 302 1 1078 267 39 27 chr4 925771 925915 -183362747 + L1MEc LINE L1 2685 2826 -3389 2947 92 54 7 chr4 925915 926339 -183362323 + MLT2A1 LTR ERVL 1 444 0 1078 267 39 27 chr4 926339 926606 -183362056 + L1MEc LINE L1 2826 3101 -3114 421 67 0 0 chr4 926614 926674 -183361988 + L1P3 LINE L1 5723 5782 -372 1156 37 0 15 chr4 926678 926812 -183361850 + AluYb8 SINE Alu 1 132 -186 1352 316 38 15 chr4 926876 927688 -183360974 + L1MEc LINE L1 3365 4195 -2020 1060 142 111 0 chr4 928007 928197 -183360465 - AluJb SINE Alu -22 290 80 1121 105 26 0 chr4 928273 928426 -183360236 - AluSg/x SINE Alu -19 291 135 506 209 147 0 chr4 928427 928604 -183360058 - Charlie5 DNA MER1_type -60 2552 2350 205 297 120 47 chr4 929698 929890 -183358772 + L2 LINE L2 2155 2360 -954 807 252 13 4 chr4 930171 930401 -183358261 + L1ME3A LINE L1 5624 5855 -315 1145 223 21 7 chr4 930407 930690 -183357972 + AluSx SINE Alu 26 312 0 371 277 8 54 chr4 931174 931411 -183357251 + C-rich Low_complexity Low_complexity 1 226 0 216 344 0 27 chr4 931427 931610 -183357052 + C-rich Low_complexity Low_complexity 1 178 0 185 0 0 39 chr4 931646 931672 -183356990 + (CCCCCT)n Simple_repeat Simple_repeat 1 25 0 346 190 235 23 chr4 935150 935328 -183353334 - MLT1J1 LTR MaLR -249 201 3 211 283 43 22 chr4 936118 936210 -183352452 - L2 LINE L2 -120 3193 3100 223 296 92 7 chr4 936504 936646 -183352016 - L2 LINE L2 -285 3028 2875 369 0 0 0 chr4 936946 936987 -183351675 + (CA)n Simple_repeat Simple_repeat 2 42 0 539 321 117 20 chr4 937007 937380 -183351282 + L1ME LINE L1 2676 3088 -3058 324 324 36 21 chr4 937486 937693 -183350969 + L1ME LINE L1 5564 5773 -348 2301 95 0 7 chr4 937753 938047 -183350615 - AluSc SINE Alu -17 292 1 2320 72 21 3 chr4 938155 938445 -183350217 - AluY SINE Alu -15 296 2 23 0 0 0 chr4 939381 939404 -183349258 + AT_rich Low_complexity Low_complexity 1 23 0 1824 154 3 14 chr4 939404 939697 -183348965 - AluJo SINE Alu -22 290 1 2218 128 0 0 chr4 939707 940004 -183348658 - AluSx SINE Alu -15 297 1 843 275 36 14 chr4 941103 941379 -183347283 - L3b LINE CR1 -200 1383 1102 367 246 95 8 chr4 941740 941866 -183346796 + L1ME LINE L1 5344 5480 -641 2684 146 116 30 chr4 941899 942705 -183345957 + L1MCa LINE L1 1203 2207 -4219 2070 106 34 20 chr4 942705 942997 -183345665 + AluSx SINE Alu 1 296 -16 2684 146 116 30 chr4 942997 943256 -183345406 + L1MCa LINE L1 2207 2442 -3984 6690 209 75 114 chr4 943392 944235 -183344427 + L1MCa LINE L1 2428 3303 -3123 986 210 46 1 chr4 944235 944536 -183344126 - MER2 DNA MER2_type 0 345 1 6690 209 75 114 chr4 944536 946181 -183342481 + L1MCa LINE L1 3303 5106 -1320 319 343 73 7 chr4 946825 946962 -183341700 - MIR SINE MIR -97 165 20 238 220 0 0 chr4 947289 947339 -183341323 + L2 LINE L2 3183 3232 -81 350 229 58 122 chr4 947718 947923 -183340739 + MIR SINE MIR 1 192 -70 203 351 22 30 chr4 948001 948135 -183340527 + L2 LINE L2 2622 2754 -560 297 280 13 70 chr4 948239 948396 -183340266 - MIR SINE MIR 0 262 115 * 564 209 104 86 chr4 948391 948510 -183340152 + MIR SINE MIR 35 161 -101 2157 128 3 0 chr4 948510 948806 -183339856 + AluSx SINE Alu 1 297 -15 564 209 104 86 chr4 948806 948906 -183339756 + MIR SINE MIR 161 258 -4 1373 191 93 31 chr4 948949 949273 -183339389 + MER2 DNA MER2_type 1 344 0 918 251 212 6 chr4 949343 949706 -183338956 - L2 LINE L2 -337 2977 2540 7541 29 13 0 chr4 949717 950787 -183337875 - L1PA4 LINE L1 0 6155 5082 343 269 185 0 chr4 950794 950902 -183337760 - MIR SINE MIR -108 154 27 750 293 98 32 chr4 951260 951578 -183337084 + L1MDa LINE L1 27 374 -6166 1651 167 25 117 chr4 951578 952050 -183336612 - MSTB1 LTR MaLR 0 432 4 750 293 98 32 chr4 952050 952100 -183336562 + L1MDa LINE L1 374 419 -6121 234 313 1 13 chr4 952191 952279 -183336383 + L1MDa LINE L1 778 865 -5665 2539 92 14 0 chr4 952398 952747 -183335915 + L1PB1 LINE L1 5794 6147 -4 1480 229 72 13 chr4 952756 953333 -183335329 + L1MDa LINE L1 2155 2650 -3890 1173 176 5 11 chr4 953333 953521 -183335141 + AluJo SINE Alu 1 187 -125 1000 253 68 3 chr4 953629 953965 -183334697 + L1MDa LINE L1 2761 3118 -3422 192 304 14 29 chr4 954002 954071 -183334591 + L2 LINE L2 1164 1231 -2083 200 289 19 58 chr4 954097 954201 -183334461 + L2 LINE L2 1298 1397 -1917 1137 230 157 3 chr4 954223 954566 -183334096 + MSTD LTR MaLR 1 396 0 280 242 0 102 chr4 954775 954903 -183333759 + L2 LINE L2 3198 3312 -1 425 331 64 0 chr4 955288 955445 -183333217 + MIR SINE MIR 73 239 -23 478 330 52 6 chr4 955525 955698 -183332964 - MIR SINE MIR -70 192 12 265 215 131 0 chr4 956140 956247 -183332415 - L1ME4a LINE L1 -171 5950 5830 409 254 224 15 chr4 956383 956584 -183332078 + MIR SINE MIR 9 251 -11 378 303 25 8 chr4 956900 957022 -183331640 - MER5B DNA MER1_type 0 178 55 1171 257 150 1 chr4 957153 957847 -183330815 - L1ME3A LINE L1 -48 6122 5318 982 156 11 5 chr4 960011 960197 -183328465 - Charlie1 DNA MER1_type -4 2757 2571 389 235 50 50 chr4 961736 961915 -183326747 + L1M4 LINE L1 5096 5274 -872 2192 75 0 4 chr4 962892 963159 -183325503 + AluY SINE Alu 1 266 -45 2238 102 0 16 chr4 963365 963669 -183324993 + AluSx SINE Alu 14 312 0 234 354 42 23 chr4 964190 964405 -183324257 + MIR SINE MIR 25 243 -19 228 297 121 11 chr4 964763 964945 -183323717 + L1MDa LINE L1 1886 2087 -4634 2194 129 0 3 chr4 965971 966280 -183322382 - AluSx SINE Alu -4 308 1 232 273 65 0 chr4 967400 967477 -183321185 + L1ME3A LINE L1 6051 6132 -38 416 270 94 56 chr4 967509 967831 -183320831 + L1MDa LINE L1 3235 3609 -2931 1177 244 4 8 chr4 967831 968069 -183320593 + MER8 DNA MER2_type 1 237 -2 416 270 94 56 chr4 968069 968082 -183320580 + L1MDa LINE L1 3609 3620 -2920 338 83 0 0 chr4 968094 968142 -183320520 + AluYb8 SINE Alu 84 131 -177 1576 55 0 0 chr4 968174 968356 -183320306 + AluY SINE Alu 33 214 -97 2255 176 117 4 chr4 968476 968970 -183319692 - L1MB4 LINE L1 -8 6172 5623 565 238 171 6 chr4 968971 969152 -183319510 + LTR16A1 LTR ERVL 247 457 0 2386 107 3 0 chr4 969551 969861 -183318801 + AluSx SINE Alu 1 311 -1 198 258 40 113 chr4 970386 970510 -183318152 - MIR SINE MIR -111 151 37 258 0 30 0 chr4 970650 970683 -183317979 + (TTTG)n Simple_repeat Simple_repeat 2 128 0 2174 119 0 3 chr4 970683 970965 -183317697 - AluSx SINE Alu -9 303 1 951 254 82 21 chr4 971049 971630 -183317032 - L1ME LINE L1 -3750 2465 1892 560 269 14 30 chr4 971642 971861 -183316801 - L1ME LINE L1 -4216 2000 1423 * 4541 171 22 30 chr4 971848 972430 -183316232 - L1MB1 LINE L1 -1 6167 5582 2019 105 84 3 chr4 972430 972715 -183315947 - AluSg1 SINE Alu -1 308 1 4541 171 22 30 chr4 972715 973538 -183315124 - L1MB1 LINE L1 -586 5582 4772 2002 126 22 41 chr4 973538 973856 -183314806 - AluSx SINE Alu 0 312 1 4541 171 22 30 chr4 973856 973904 -183314758 - L1MB1 LINE L1 -1396 4772 4725 6817 175 34 14 chr4 973910 974913 -183313749 + L1 LINE L1 3255 4299 -1847 2146 96 21 11 chr4 974913 975216 -183313446 + AluY SINE Alu 1 306 0 6817 175 34 14 chr4 975216 975678 -183312984 + L1 LINE L1 4299 4750 -1396 686 264 89 84 chr4 975787 976519 -183312143 - L1ME LINE L1 -4896 1321 684 286 301 11 23 chr4 976755 976931 -183311731 - L1ME LINE L1 -5607 598 425 619 153 51 0 chr4 977109 977227 -183311435 + MSTD LTR MaLR 273 396 0 470 301 164 14 chr4 977227 977519 -183311143 + L2 LINE L2 2315 2650 -664 252 296 58 64 chr4 977778 977950 -183310712 + L2 LINE L2 3142 3312 -1 249 325 44 26 chr4 978118 978232 -183310430 + L3 LINE CR1 332 447 -1130 187 250 0 0 chr4 978555 978599 -183310063 + L3 LINE CR1 410 453 -1124 342 188 75 25 chr4 978762 978842 -183309820 - L2 LINE L2 -37 3235 3152 337 294 59 13 chr4 979513 979666 -183308996 + L3 LINE CR1 1195 1354 -223 2239 112 3 32 chr4 979915 980228 -183308434 - AluSx SINE Alu -8 304 1 6002 222 82 70 chr4 980522 982154 -183306508 - MER52A LTR ERV1 0 1755 104 1056 203 121 4 chr4 982216 982472 -183306190 - MER52A LTR ERV1 -1469 286 1 470 261 85 71 chr4 982801 983012 -183305650 - MIR SINE MIR -21 241 28 198 0 0 0 chr4 983340 983362 -183305300 + (T)n Simple_repeat Simple_repeat 1 22 0 259 291 13 32 chr4 984443 984601 -183304061 + G-rich Low_complexity Low_complexity 3 157 0 * 297 222 16 60 chr4 984513 984784 -183303878 + (TGGG)n Simple_repeat Simple_repeat 1 259 0 199 337 36 0 chr4 984844 984927 -183303735 + MIR3 SINE MIR 114 199 -9 858 276 56 0 chr4 985685 985917 -183302745 + MIR SINE MIR 8 252 -10 429 308 19 30 chr4 986106 986369 -183302293 - L1MC5 LINE L1 -215 7746 7487 610 237 28 96 chr4 986880 987171 -183301491 - L1MC5 LINE L1 -844 7117 6847 413 304 55 55 chr4 987220 987437 -183301225 - L1MC4a LINE L1 -1137 6671 6455 14602 125 27 12 chr4 987457 989266 -183299396 - Tigger1 DNA MER2_type 0 2418 564 1838 144 34 27 chr4 989266 989558 -183299104 + AluJo SINE Alu 1 294 -18 14602 125 27 12 chr4 989558 990123 -183298539 - Tigger1 DNA MER2_type -1854 564 9 374 269 12 76 chr4 990245 990416 -183298246 - L1MC4a LINE L1 -1537 6271 6112 3171 227 111 48 chr4 990416 991264 -183297398 + L1MEc LINE L1 2179 2972 -3243 1606 145 0 9 chr4 991264 991492 -183297170 + AluSg/x SINE Alu 75 300 -12 3171 227 111 48 chr4 991492 991832 -183296830 + L1MEc LINE L1 2972 3289 -2926 1466 205 28 11 chr4 991832 992115 -183296547 + AluJb SINE Alu 1 288 -14 3171 227 111 48 chr4 992115 992454 -183296208 + L1MEc LINE L1 3289 3753 -2462 2223 98 16 16 chr4 992547 992852 -183295810 - AluSx SINE Alu -7 305 1 253 264 112 8 chr4 992876 993001 -183295661 - HAL1 LINE L1 -2280 227 90 587 275 104 40 chr4 993051 993361 -183295301 - L1MEd LINE L1 -4502 1627 1338 2523 68 6 6 chr4 993361 993672 -183294990 - AluY SINE Alu 0 311 1 587 275 104 40 chr4 993672 994252 -183294410 - L1MEd LINE L1 -4791 1338 692 35 41 0 0 chr4 1001696 1001745 -183286917 + GC_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr4 1003105 1003126 -183285536 + GC_rich Low_complexity Low_complexity 1 21 0 515 96 48 10 chr4 1003339 1003443 -183285219 + C-rich Low_complexity Low_complexity 1 108 0 181 238 71 0 chr4 1004103 1004145 -183284517 + MER5B DNA MER1_type 7 51 -127 382 216 104 8 chr4 1004160 1004285 -183284377 + L1MC4a LINE L1 6124 6260 -1548 1451 220 20 41 chr4 1004353 1004405 -183284257 - Charlie1 DNA MER1_type -6 2755 2703 1678 114 35 98 chr4 1004405 1004704 -183283958 + AluJb SINE Alu 1 281 -31 2277 110 0 0 chr4 1004704 1005003 -183283659 + AluSx SINE Alu 14 312 0 1678 114 35 98 chr4 1005003 1005019 -183283643 + AluJb SINE Alu 281 296 -16 1451 220 20 41 chr4 1005019 1005357 -183283305 - Charlie1 DNA MER1_type -58 2703 2373 333 191 0 31 chr4 1006868 1007202 -183281460 + (TTCA)n Simple_repeat Simple_repeat 1 323 0 524 130 0 53 chr4 1007226 1007395 -183281267 + (TTCA)n Simple_repeat Simple_repeat 3 162 0 242 303 45 8 chr4 1008941 1009073 -183279589 + L2 LINE L2 2837 2973 -340 6095 224 61 20 chr4 1009966 1011963 -183276699 + L1M4 LINE L1 9 2096 -4550 11524 136 77 9 chr4 1011972 1013475 -183275187 + L1M4c LINE L1 20 1724 -4660 1979 90 115 4 chr4 1013475 1013753 -183274909 + AluSq SINE Alu 1 309 -4 11524 136 77 9 chr4 1013753 1014455 -183274207 + L1M4c LINE L1 1724 2376 -4008 532 181 0 0 chr4 1014455 1014549 -183274113 - AluJ/FRAM SINE Alu -3 309 216 2641 192 30 3 chr4 1014662 1015229 -183273433 + L1MB3 LINE L1 5586 6167 -16 458 298 31 31 chr4 1015246 1015538 -183273124 - L1M4c LINE L1 -4144 2240 1949 2064 113 26 29 chr4 1015613 1015924 -183272738 + AluSx SINE Alu 1 310 -2 334 257 44 53 chr4 1015946 1016152 -183272510 + L1M4 LINE L1 2514 2717 -3929 4151 227 63 49 chr4 1016172 1017068 -183271594 + L1M4 LINE L1 2771 3653 -2991 1863 130 72 10 chr4 1017068 1017360 -183271302 + AluJb SINE Alu 1 310 -2 4151 227 63 49 chr4 1017360 1017400 -183271262 + L1M4 LINE L1 3653 3691 -2953 2289 103 0 7 chr4 1017400 1017701 -183270961 + AluY SINE Alu 1 299 -12 4151 227 63 49 chr4 1017701 1018305 -183270357 + L1M4 LINE L1 3691 4334 -2310 3189 221 25 30 chr4 1018310 1019190 -183269472 + L1M4 LINE L1 4642 5517 -1127 284 292 109 22 chr4 1019751 1019888 -183268774 + MIR3 SINE MIR 18 166 -42 251 326 34 14 chr4 1020714 1020861 -183267801 + (CA)n Simple_repeat Simple_repeat 1 150 0 226 307 12 42 chr4 1021294 1021460 -183267202 + G-rich Low_complexity Low_complexity 3 163 0 26 50 0 0 chr4 1021784 1021824 -183266838 + AT_rich Low_complexity Low_complexity 1 40 0 1082 219 26 0 chr4 1023196 1023429 -183265233 - MLT1E2 LTR MaLR 0 626 388 236 242 15 15 chr4 1023440 1023506 -183265156 - MLT1E1 LTR MaLR -530 124 59 2307 150 20 60 chr4 1023527 1023973 -183264689 - MSTC LTR MaLR 0 428 1 284 278 14 0 chr4 1024584 1024656 -183264006 + L2 LINE L2 2553 2625 -689 223 186 0 29 chr4 1024669 1024739 -183263923 + (TA)n Simple_repeat Simple_repeat 1 68 0 414 234 32 60 chr4 1024745 1024993 -183263669 - L1ME LINE L1 -404 5717 5416 1071 205 4 39 chr4 1026088 1026322 -183262340 + AluJb SINE Alu 74 299 -13 7040 107 25 21 chr4 1026325 1027565 -183261097 - HSMAR2 DNA Mariner -55 1247 3 195 100 0 0 chr4 1028219 1028249 -183260413 + (A)n Simple_repeat Simple_repeat 1 30 0 477 271 26 42 chr4 1028308 1028500 -183260162 + MIR SINE MIR 30 218 -44 2266 131 50 77 chr4 1029230 1029674 -183258988 + MSTB1 LTR MaLR 1 432 0 259 252 93 0 chr4 1030230 1030337 -183258325 - L2 LINE L2 -1 3312 3196 1214 207 29 19 chr4 1030603 1030912 -183257750 + MLT1B LTR MaLR 79 390 0 654 251 55 42 chr4 1030953 1031260 -183257402 - LTR37A LTR ERV1 -111 315 5 281 275 0 11 chr4 1032170 1032261 -183256401 - MLT1F1 LTR MaLR 0 567 478 345 315 0 0 chr4 1032434 1032612 -183256050 + C-rich Low_complexity Low_complexity 1 178 0 970 150 23 6 chr4 1035787 1035960 -183252702 - AluJo SINE Alu -125 187 12 297 284 68 34 chr4 1036253 1036401 -183252261 + MIR3 SINE MIR 21 173 -35 969 356 87 73 chr4 1037313 1037802 -183250860 + L1M4 LINE L1 2734 3215 -2931 1917 158 10 3 chr4 1037802 1038112 -183250550 + AluSx SINE Alu 1 312 0 969 356 87 73 chr4 1038112 1039151 -183249511 + L1M4 LINE L1 3215 4288 -1858 2111 120 7 0 chr4 1039151 1039459 -183249203 + AluSq SINE Alu 1 310 -3 969 356 87 73 chr4 1039459 1039549 -183249113 + L1M4 LINE L1 4288 4375 -1771 267 289 160 5 chr4 1040078 1040234 -183248428 + MIR SINE MIR 10 187 -72 2311 77 0 3 chr4 1041621 1041918 -183246744 - AluY SINE Alu -15 296 1 895 206 12 6 chr4 1041971 1042141 -183246521 - L1MB7 LINE L1 -10 6174 6004 328 270 0 63 chr4 1042316 1042442 -183246220 - MSTB1 LTR MaLR -314 118 1 266 133 0 0 chr4 1042486 1042531 -183246131 - MLT2A2 LTR ERVL -2 451 407 594 266 132 20 chr4 1042543 1042955 -183245707 - MLT-int LTR MaLR -381 1354 841 680 199 15 0 chr4 1043139 1043275 -183245387 + MLT1A1 LTR MaLR 227 364 -1 1595 265 54 17 chr4 1043299 1043904 -183244758 - L1MB7 LINE L1 -187 5997 5335 2158 112 0 3 chr4 1043904 1044207 -183244455 - AluSx SINE Alu -10 302 1 1595 265 54 17 chr4 1044207 1044275 -183244387 - L1MB7 LINE L1 -849 5335 5271 216 291 25 0 chr4 1048871 1048950 -183239712 + (CA)n Simple_repeat Simple_repeat 1 81 0 219 256 166 25 chr4 1050196 1050395 -183238267 + L2 LINE L2 2355 2581 -733 201 39 0 0 chr4 1051901 1051927 -183236735 + (A)n Simple_repeat Simple_repeat 1 26 0 186 266 0 0 chr4 1055354 1055433 -183233229 + (CA)n Simple_repeat Simple_repeat 2 80 0 240 355 58 11 chr4 1057728 1058153 -183230509 + L1ME LINE L1 1267 1877 -4954 2199 74 0 0 chr4 1058172 1058456 -183230206 + AluSg SINE Alu 11 294 -16 489 240 58 90 chr4 1058776 1059088 -183229574 + L1ME LINE L1 2759 3035 -3906 1532 179 29 18 chr4 1059088 1059212 -183229450 + AluJo SINE Alu 1 122 -190 195 42 0 0 chr4 1059212 1059236 -183229426 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1532 179 29 18 chr4 1059236 1059390 -183229272 + AluJo SINE Alu 122 282 -30 489 240 58 90 chr4 1059390 1059519 -183229143 + L1ME LINE L1 3035 3167 -3774 433 275 89 59 chr4 1059511 1059747 -183228915 + L1ME LINE L1 4803 5045 -1896 * 556 235 67 0 chr4 1059747 1059866 -183228796 - FLAM_C SINE Alu -16 127 1 242 287 35 0 chr4 1059876 1059963 -183228699 + L1ME LINE L1 5075 5164 -1777 2122 113 20 0 chr4 1059963 1060256 -183228406 + AluSx SINE Alu 1 299 -13 633 129 20 0 chr4 1060256 1060357 -183228305 + AluSg/x SINE Alu 208 310 0 419 278 93 5 chr4 1060357 1060551 -183228111 + L1ME LINE L1 5177 5387 -1554 641 297 154 22 chr4 1060553 1061092 -183227570 + L1ME LINE L1 5420 6029 -912 552 282 114 16 chr4 1061219 1061592 -183227070 + L1ME LINE L1 6164 6594 -363 225 154 0 0 chr4 1061898 1061937 -183226725 + GA-rich Low_complexity Low_complexity 2 40 0 218 205 0 0 chr4 1063846 1063885 -183224777 + (CA)n Simple_repeat Simple_repeat 1 39 0 194 302 35 0 chr4 1063891 1063977 -183224685 + L2 LINE L2 3155 3243 -29 218 204 10 92 chr4 1064347 1064543 -183224119 + (TG)n Simple_repeat Simple_repeat 1 180 0 252 288 16 38 chr4 1067303 1067487 -183221175 + (TG)n Simple_repeat Simple_repeat 1 180 0 601 231 109 7 chr4 1072094 1072241 -183216421 - AluJb SINE Alu -10 302 141 23 0 0 0 chr4 1072315 1072338 -183216324 + AT_rich Low_complexity Low_complexity 1 23 0 2127 130 0 0 chr4 1072347 1072646 -183216016 - AluSx SINE Alu -9 303 5 432 315 46 5 chr4 1073856 1074072 -183214590 - MLT1J LTR MaLR -16 495 271 470 359 53 18 chr4 1075024 1075364 -183213298 - L1MD2 LINE L1 -444 5915 5564 308 236 101 0 chr4 1083983 1084072 -183204590 + L1MC3 LINE L1 7685 7782 -3 250 264 60 36 chr4 1085581 1085748 -183202914 + (CAGGG)n Simple_repeat Simple_repeat 4 174 0 252 245 40 20 chr4 1088796 1088947 -183199715 + (CG)n Simple_repeat Simple_repeat 1 154 0 246 184 37 59 chr4 1089029 1089165 -183199497 + (CCGCG)n Simple_repeat Simple_repeat 4 136 0 23 0 0 0 chr4 1089176 1089199 -183199463 + GC_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr4 1089283 1089303 -183199359 + (CGGGG)n Simple_repeat Simple_repeat 2 21 0 2212 116 0 3 chr4 1092146 1092448 -183196214 - AluSq SINE Alu -12 301 1 2091 155 112 4 chr4 1092542 1093007 -183195655 - L1MA8 LINE L1 -6 6285 5771 199 400 22 0 chr4 1093049 1093139 -183195523 + MIR SINE MIR 97 188 -74 1319 227 96 14 chr4 1093295 1093661 -183195001 - MSTD LTR MaLR 0 396 1 824 285 112 75 chr4 1093757 1094198 -183194464 + L1MEd LINE L1 332 756 -5660 935 120 0 0 chr4 1094198 1094323 -183194339 - FLAM_C SINE Alu -8 125 1 824 285 112 75 chr4 1094323 1095038 -183193624 + L1MEd LINE L1 756 1530 -4886 321 353 78 41 chr4 1095060 1095278 -183193384 + L1MEd LINE L1 1407 1632 -4794 704 244 73 23 chr4 1095285 1095563 -183193099 - MLT1E LTR MaLR -2 591 235 6056 211 92 56 chr4 1095789 1096221 -183192441 - L1MB3 LINE L1 -7 6176 5761 2627 100 28 17 chr4 1096221 1096581 -183192081 + THE1B LTR MaLR 1 364 0 6056 211 92 56 chr4 1096581 1096837 -183191825 - L1MB3 LINE L1 -422 5761 5516 192 97 0 0 chr4 1096837 1096868 -183191794 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6056 211 92 56 chr4 1096868 1096918 -183191744 - L1MB3 LINE L1 -667 5516 5469 1467 172 36 20 chr4 1096918 1097105 -183191557 - AluJo SINE Alu 0 312 117 225 0 0 0 chr4 1097105 1097130 -183191532 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 1467 172 36 20 chr4 1097130 1097245 -183191417 - AluJo SINE Alu -195 117 5 6056 211 92 56 chr4 1097245 1098855 -183189807 - L1MB3 LINE L1 -714 5469 3919 1705 164 42 0 chr4 1098855 1099141 -183189521 - AluJb SINE Alu -14 298 1 6056 211 92 56 chr4 1099141 1099157 -183189505 - L1MB3 LINE L1 -2264 3919 3905 1928 151 10 10 chr4 1099157 1099468 -183189194 - AluJo SINE Alu -1 311 1 6056 211 92 56 chr4 1099468 1100536 -183188126 - L1MB3 LINE L1 -2278 3905 2614 191 373 20 59 chr4 1100850 1101054 -183187608 - MIR SINE MIR -34 228 33 2015 226 28 67 chr4 1102060 1102485 -183186177 - L1MC/D LINE L1 -466 5776 5336 1907 178 36 0 chr4 1102485 1102817 -183185845 + MER2 DNA MER2_type 1 344 0 2015 226 28 67 chr4 1102817 1103511 -183185151 - L1MC/D LINE L1 -906 5336 4617 2122 104 0 4 chr4 1103511 1103825 -183184837 - AluSc SINE Alu 0 313 1 1791 171 0 16 chr4 1103825 1104130 -183184532 - AluJo SINE Alu -12 300 1 2015 226 28 67 chr4 1104130 1104207 -183184455 - L1MC/D LINE L1 -1534 4708 4630 2330 103 0 0 chr4 1104213 1104515 -183184147 - AluSq SINE Alu -11 302 1 1065 210 186 35 chr4 1104529 1104652 -183184010 + LTR54B LTR ERV1 1 104 -394 1582 176 29 0 chr4 1104652 1104950 -183183712 + AluJo SINE Alu 1 306 0 1065 210 186 35 chr4 1104950 1105225 -183183437 + LTR54B LTR ERV1 104 472 -26 624 151 123 0 chr4 1105225 1105331 -183183331 + FLAM_A SINE Alu 1 119 -14 1065 210 186 35 chr4 1105331 1105359 -183183303 + LTR54B LTR ERV1 472 494 -4 1621 181 7 11 chr4 1106088 1106375 -183182287 + AluJo SINE Alu 1 286 -26 5867 219 32 56 chr4 1106942 1107489 -183181173 - L1M4 LINE L1 -1449 4933 4374 7283 94 27 17 chr4 1107489 1108486 -183180176 - LTR13 LTR ERVK 0 1007 1 5867 219 32 56 chr4 1108486 1108601 -183180061 - L1M4 LINE L1 -2008 4374 4258 225 0 0 0 chr4 1108601 1108626 -183180036 + (TG)n Simple_repeat Simple_repeat 2 26 0 2210 80 0 7 chr4 1108626 1108913 -183179749 - AluSp SINE Alu -28 285 1 1581 191 3 16 chr4 1108916 1109219 -183179443 - AluJb SINE Alu -13 299 1 5867 219 32 56 chr4 1109219 1110080 -183178582 - L1M4 LINE L1 -2125 4257 3377 1640 143 108 7 chr4 1110080 1110359 -183178303 - AluJb SINE Alu -5 307 1 5867 219 32 56 chr4 1110359 1110542 -183178120 - L1M4 LINE L1 -3005 3377 3191 3400 56 2 43 chr4 1110542 1110944 -183177718 - L1PA8 LINE L1 -2 6170 5788 2403 79 0 13 chr4 1110944 1111259 -183177403 - AluY SINE Alu 0 311 1 3400 56 2 43 chr4 1111259 1111323 -183177339 - L1PA8 LINE L1 -384 5788 5723 5867 219 32 56 chr4 1111323 1111598 -183177064 - L1M4 LINE L1 -3191 3191 2997 2951 92 57 7 chr4 1111598 1112021 -183176641 - MLT2A1 LTR ERVL 0 444 1 5867 219 32 56 chr4 1112021 1112164 -183176498 - L1M4 LINE L1 -3385 2997 2852 1732 221 79 16 chr4 1112980 1114006 -183174656 - L1M4 LINE L1 -3473 2909 1723 * 2388 229 33 24 chr4 1114002 1114024 -183174638 + L1MB4 LINE L1 4685 4705 -1475 2265 83 7 3 chr4 1114024 1114325 -183174337 + AluY SINE Alu 1 302 -9 2388 229 33 24 chr4 1114325 1114929 -183173733 + L1MB4 LINE L1 4705 5337 -843 2162 93 35 0 chr4 1114929 1115219 -183173443 - AluSx SINE Alu -12 300 1 2388 229 33 24 chr4 1115219 1115709 -183172953 + L1MB4 LINE L1 5337 5821 -359 420 286 11 6 chr4 1115707 1115882 -183172780 + L1M4 LINE L1 2695 2870 -3276 * 1663 209 32 0 chr4 1115888 1116232 -183172430 + L1MB4 LINE L1 5826 6180 0 2036 256 72 1 chr4 1116410 1117307 -183171355 - L1MB5 LINE L1 -133 6041 5080 248 303 0 34 chr4 1117358 1117536 -183171126 + (CCGCT)n Simple_repeat Simple_repeat 2 173 0 * 297 179 0 77 chr4 1117458 1117861 -183170801 + CT-rich Low_complexity Low_complexity 1 372 0 262 276 10 20 chr4 1118271 1118369 -183170293 + L1M4c LINE L1 1233 1329 -5055 2768 43 0 20 chr4 1118369 1118720 -183169942 + L1PA5 LINE L1 5811 6154 0 1142 123 0 0 chr4 1118777 1118932 -183169730 + AluSx SINE Alu 1 155 -157 756 264 81 4 chr4 1118940 1119175 -183169487 + MER45B DNA AcHobo 244 496 -544 949 143 0 0 chr4 1119179 1119319 -183169343 + AluSx SINE Alu 148 287 -23 1532 296 77 0 chr4 1119373 1119957 -183168705 + MER45B DNA AcHobo 206 834 -206 303 151 43 158 chr4 1119958 1119984 -183168678 + MER45B DNA AcHobo 777 804 -777 2202 96 3 6 chr4 1119984 1120296 -183168366 + AluY SINE Alu 1 311 0 303 151 43 158 chr4 1120296 1120408 -183168254 + MER45B DNA AcHobo 804 899 -141 2010 89 37 0 chr4 1120412 1120531 -183168131 + AluSc SINE Alu 1 114 -203 188 0 74 0 chr4 1120531 1120558 -183168104 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2010 89 37 0 chr4 1120558 1120745 -183167917 + AluSc SINE Alu 114 317 0 638 121 0 0 chr4 1120751 1120842 -183167820 + AluSg/x SINE Alu 210 300 -12 1236 161 28 117 chr4 1120853 1121281 -183167381 + L1M1 LINE L1 5178 5579 -724 477 49 99 0 chr4 1122260 1122341 -183166321 + L1M1 LINE L1 5574 5662 -641 1498 140 0 9 chr4 1122625 1122868 -183165794 + AluJb SINE Alu 64 304 0 370 273 28 103 chr4 1123466 1123719 -183164943 + MER21B LTR ERV1 13 246 -617 686 263 64 11 chr4 1123805 1124122 -183164540 + MER21B LTR ERV1 466 806 -125 557 112 0 78 chr4 1124154 1124270 -183164392 + MER4D LTR ERV1 1 107 -796 3220 187 103 72 chr4 1124425 1125130 -183163532 - LTR28 LTR ERV1 -69 951 209 2436 68 0 7 chr4 1125130 1125437 -183163225 + AluY SINE Alu 1 305 -6 3220 187 103 72 chr4 1125437 1125653 -183163009 - LTR28 LTR ERV1 -811 209 1 * 3834 119 37 78 chr4 1125653 1126009 -183162653 + MER4D LTR ERV1 103 472 -400 2248 86 16 3 chr4 1126009 1126313 -183162349 - AluSc SINE Alu -1 308 1 3834 119 37 78 chr4 1126313 1126759 -183161903 + MER4D LTR ERV1 472 872 0 518 268 131 13 chr4 1127062 1127333 -183161329 + L1ME3 LINE L1 5862 6164 0 224 352 138 19 chr4 1129240 1129450 -183159212 + MIR SINE MIR 2 236 -26 674 178 23 23 chr4 1129561 1129690 -183158972 - AluJb SINE Alu -180 132 4 545 165 189 43 chr4 1130934 1131098 -183157564 - MER20 DNA MER1_type -31 188 1 1758 93 4 8 chr4 1131281 1131528 -183157134 - AluSx SINE Alu -3 309 64 1012 167 6 0 chr4 1131638 1131806 -183156856 + AluJb SINE Alu 133 301 -11 208 349 64 9 chr4 1132077 1132186 -183156476 + L3b LINE CR1 1271 1385 -198 248 137 20 0 chr4 1133186 1133237 -183155425 + G-rich Low_complexity Low_complexity 2 53 0 183 355 153 16 chr4 1133775 1133958 -183154704 + L2 LINE L2 1166 1373 -1941 1287 111 0 0 chr4 1134090 1134448 -183154214 + (G)n Simple_repeat Simple_repeat 1 359 0 184 261 68 57 chr4 1136948 1137036 -183151626 + L2 LINE L2 1891 1979 -1335 22 0 0 0 chr4 1137427 1137449 -183151213 + GC_rich Low_complexity Low_complexity 1 22 0 506 239 163 38 chr4 1139784 1139993 -183148669 - MER58 DNA MER1_type -2182 238 4 639 254 0 8 chr4 1141261 1141395 -183147267 + FLAM_A SINE Alu 2 134 -8 1092 128 6 28 chr4 1141503 1141682 -183146980 - AluSg/x SINE Alu -3 309 135 2190 103 3 0 chr4 1141682 1141974 -183146688 - AluY SINE Alu -18 293 1 2484 60 0 13 chr4 1141984 1142299 -183146363 - AluY SINE Alu 0 311 1 1358 214 30 4 chr4 1143275 1143546 -183145116 + AluJo SINE Alu 1 278 -34 194 307 227 56 chr4 1146442 1147028 -183141634 + L2 LINE L2 1796 2481 -833 258 353 88 20 chr4 1147329 1147533 -183141129 + L2 LINE L2 3092 3309 -4 212 330 113 0 chr4 1147977 1148083 -183140579 + L2 LINE L2 1461 1578 -1736 209 326 111 35 chr4 1148275 1148447 -183140215 + L2 LINE L2 1829 2013 -1301 793 308 101 38 chr4 1148452 1148644 -183140018 + L2 LINE L2 2127 2305 -1009 1543 190 11 0 chr4 1148644 1148954 -183139708 - AluJo SINE Alu 0 313 1 793 308 101 38 chr4 1148954 1149263 -183139399 + L2 LINE L2 2305 2661 -653 225 336 99 0 chr4 1149384 1149515 -183139147 + L2 LINE L2 2886 3029 -284 211 289 214 27 chr4 1149528 1149715 -183138947 + L2 LINE L2 2998 3219 -94 23 0 0 0 chr4 1149745 1149768 -183138894 + AT_rich Low_complexity Low_complexity 1 23 0 926 324 140 20 chr4 1150420 1151183 -183137479 + Charlie7 DNA MER1_type 371 1225 -1387 846 226 32 16 chr4 1151319 1151505 -183137157 + AluJo SINE Alu 123 311 -1 1285 234 72 37 chr4 1151607 1152065 -183136597 + L1MB7 LINE L1 3454 3927 -2219 434 163 0 12 chr4 1152065 1152145 -183136517 + MLT1A2 LTR MaLR 296 374 0 1665 236 168 27 chr4 1152155 1152256 -183136406 + L1MB7 LINE L1 5213 5298 -886 2203 68 3 20 chr4 1152256 1152552 -183136110 - AluY SINE Alu -20 291 1 1665 236 168 27 chr4 1152552 1152879 -183135783 + L1MB7 LINE L1 5298 5578 -606 2021 97 7 52 chr4 1152879 1153187 -183135475 + AluSc SINE Alu 1 294 -15 1665 236 168 27 chr4 1153187 1153583 -183135079 + L1MB7 LINE L1 5578 6184 0 195 167 28 28 chr4 1153667 1153739 -183134923 + (CAGGG)n Simple_repeat Simple_repeat 4 75 0 565 196 36 29 chr4 1153925 1154063 -183134599 + MER33 DNA MER1_type 27 165 -159 801 188 0 7 chr4 1154063 1154207 -183134455 - FLAM_C SINE Alu 0 143 1 2187 85 7 3 chr4 1154218 1154512 -183134150 - AluY SINE Alu -16 295 1 450 172 117 14 chr4 1154520 1154665 -183133997 + MER33 DNA MER1_type 157 316 -8 339 217 24 12 chr4 1154979 1155062 -183133600 - MER20 DNA MER1_type -135 84 1 311 274 263 5 chr4 1155151 1155337 -183133325 - L1ME LINE L1 -348 5818 5585 269 254 0 0 chr4 1155489 1155548 -183133114 + (CGTG)n Simple_repeat Simple_repeat 1 59 0 908 279 75 53 chr4 1155549 1156000 -183132662 - MLT2B1 LTR ERVL -58 462 2 316 227 31 0 chr4 1156009 1156106 -183132556 - L1ME LINE L1 -728 5436 5337 1162 176 0 10 chr4 1156106 1156305 -183132357 + AluSg/x SINE Alu 105 301 -11 1309 290 77 6 chr4 1156329 1156863 -183131799 - L1ME LINE L1 -850 5296 4725 1200 233 40 20 chr4 1156899 1157301 -183131361 - L1MB2 LINE L1 -1 6182 5787 1504 230 101 7 chr4 1157312 1157768 -183130894 - MLT2B2 LTR ERVL -15 500 2 1582 220 51 3 chr4 1157779 1158111 -183130551 - MER7A DNA MER2_type 0 346 1 411 236 126 8 chr4 1158111 1158227 -183130435 - L1MB2 LINE L1 -387 5784 5650 293 263 42 34 chr4 1158364 1158482 -183130180 - L1MB2 LINE L1 -706 5477 5359 227 120 250 10 chr4 1158583 1158683 -183129979 - L1MB2 LINE L1 -920 5226 5103 260 272 0 12 chr4 1158946 1159027 -183129635 - HAL1 LINE L1 -847 1660 1581 2177 108 7 3 chr4 1162163 1162468 -183126194 - AluSx SINE Alu -6 306 1 438 326 97 81 chr4 1162909 1163188 -183125474 + L1MEd LINE L1 561 834 -1664 1665 137 32 11 chr4 1163188 1163472 -183125190 + AluJo SINE Alu 1 290 -22 438 326 97 81 chr4 1163472 1163535 -183125127 + L1MEd LINE L1 834 895 -1603 1606 143 37 0 chr4 1163535 1163780 -183124882 + AluJb SINE Alu 35 288 -24 2063 90 35 7 chr4 1163786 1164076 -183124586 + AluSx SINE Alu 1 298 -14 438 326 97 81 chr4 1164076 1164593 -183124069 + L1MEd LINE L1 899 1523 -975 364 267 30 0 chr4 1164637 1164738 -183123924 - MER3 DNA MER1_type -76 133 30 487 301 65 38 chr4 1164745 1164931 -183123731 + L1MEd LINE L1 2320 2510 -3619 394 230 34 34 chr4 1166634 1166812 -183121850 + (CCCCAG)n Simple_repeat Simple_repeat 1 178 0 * 449 254 0 28 chr4 1166698 1166879 -183121783 + C-rich Low_complexity Low_complexity 4 179 0 1571 179 3 7 chr4 1168647 1168943 -183119719 + AluJo SINE Alu 1 295 -17 731 175 0 32 chr4 1169204 1169330 -183119332 + FRAM SINE Alu 38 159 -17 417 306 82 100 chr4 1169403 1170396 -183118266 + L1M4c LINE L1 800 1209 -1566 2282 81 0 0 chr4 1170396 1170693 -183117969 + AluY SINE Alu 1 297 -14 417 306 82 100 chr4 1170693 1171120 -183117542 + L1M4c LINE L1 1209 1642 -1133 2223 93 27 0 chr4 1172514 1172815 -183115847 - AluSc SINE Alu 0 309 1 23 110 0 0 chr4 1174561 1174661 -183114001 + GC_rich Low_complexity Low_complexity 1 100 0 1936 67 4 0 chr4 1180171 1180411 -183108251 - AluSg SINE Alu -69 241 1 1485 184 52 10 chr4 1182224 1182512 -183106150 + AluJo SINE Alu 1 300 -12 1802 159 3 20 chr4 1182843 1183144 -183105518 + AluJo SINE Alu 1 296 -16 209 269 60 18 chr4 1184745 1184912 -183103750 + (TCTCTG)n Simple_repeat Simple_repeat 4 177 0 235 294 49 12 chr4 1185699 1185862 -183102800 + (CGGGG)n Simple_repeat Simple_repeat 2 170 0 227 264 55 22 chr4 1188152 1188243 -183100419 - L1ME LINE L1 -450 5712 5619 1913 259 63 23 chr4 1188390 1188761 -183099901 - L1ME2 LINE L1 -8 6225 5870 2054 93 0 0 chr4 1188761 1189020 -183099642 - AluSc SINE Alu -50 259 1 1913 259 63 23 chr4 1189020 1189373 -183099289 - L1ME2 LINE L1 -363 5870 5472 1456 281 52 38 chr4 1189485 1190114 -183098548 - L1ME2 LINE L1 -942 5273 4631 1525 219 84 30 chr4 1190114 1190483 -183098179 - MLT1B LTR MaLR -1 389 1 1456 281 52 38 chr4 1190483 1190560 -183098102 - L1ME2 LINE L1 -1584 4631 4557 1843 88 0 4 chr4 1190588 1190826 -183097836 + AluSg SINE Alu 55 291 -19 710 274 81 27 chr4 1190828 1191237 -183097425 - L1ME2 LINE L1 -4603 1793 1363 2212 120 0 0 chr4 1191296 1191597 -183097065 + AluSx SINE Alu 1 301 -11 367 291 195 42 chr4 1191647 1191980 -183096682 - L2 LINE L2 -7 3306 2923 798 291 112 3 chr4 1192031 1192371 -183096291 - L2 LINE L2 -518 2796 2420 2163 79 0 0 chr4 1192399 1192676 -183095986 + AluSx SINE Alu 14 290 -22 259 396 7 21 chr4 1197745 1197889 -183090773 - MIR SINE MIR -20 242 101 25 0 0 0 chr4 1199246 1199271 -183089391 + AT_rich Low_complexity Low_complexity 1 25 0 437 215 47 0 chr4 1202241 1202348 -183086314 - LTR45 LTR ERV1 0 525 414 359 262 12 0 chr4 1202362 1202446 -183086216 - LTR45 LTR ERV1 -440 85 1 183 156 0 0 chr4 1207360 1207392 -183081270 + (TG)n Simple_repeat Simple_repeat 1 32 0 342 264 23 0 chr4 1207748 1207835 -183080827 - MER58A DNA MER1_type -18 89 1 315 0 0 0 chr4 1208358 1208393 -183080269 + (TG)n Simple_repeat Simple_repeat 2 36 0 1958 140 90 29 chr4 1208592 1208935 -183079727 - THE1B LTR MaLR 0 364 1 264 329 25 6 chr4 1209179 1209337 -183079325 - L1M4 LINE L1 -3772 2374 2214 318 398 59 5 chr4 1210103 1210289 -183078373 - HAL1 LINE L1 -838 1669 1474 2288 65 45 17 chr4 1210290 1210642 -183078020 - MLT2A1 LTR ERVL -69 375 14 755 280 0 11 chr4 1212163 1212352 -183076310 + MER5A DNA MER1_type 1 187 -2 1003 185 17 0 chr4 1212385 1212563 -183076099 + AluSg/x SINE Alu 130 310 0 199 330 11 34 chr4 1212884 1212972 -183075690 - MIR SINE MIR -157 105 20 506 157 24 0 chr4 1213073 1213156 -183075506 - AluJ/FRAM SINE Alu -8 304 220 300 424 8 4 chr4 1214059 1214302 -183074360 + MIR SINE MIR 8 251 -11 742 174 134 40 chr4 1214477 1214678 -183073984 + L1M4 LINE L1 5402 5621 -563 1024 144 0 0 chr4 1414707 1414853 -182873809 + AluJo/FRAM SINE Alu 131 276 -36 281 26 26 0 chr4 1414860 1414898 -182873764 + (TAA)n Simple_repeat Simple_repeat 2 40 0 2078 83 4 7 chr4 1414916 1415193 -182873469 + AluSx SINE Alu 26 301 -11 256 268 89 18 chr4 1419465 1419577 -182869085 - MLT1K LTR MaLR -2 586 467 274 282 39 0 chr4 1419654 1419732 -182868930 - MLT1K LTR MaLR -342 246 166 352 341 112 25 chr4 1419839 1420070 -182868592 + L2 LINE L2 2973 3239 -74 2080 127 10 0 chr4 1420070 1420403 -182868259 - AluSx SINE Alu 0 312 1 352 341 112 25 chr4 1420403 1420485 -182868177 + L2 LINE L2 3239 3313 0 635 215 6 0 chr4 1420485 1420657 -182868005 + (TGGA)n Simple_repeat Simple_repeat 2 174 0 790 208 6 1 chr4 1420682 1421383 -182867279 + (TGGA)n Simple_repeat Simple_repeat 1 704 0 972 200 9 5 chr4 1421416 1421862 -182866800 + (TGGA)n Simple_repeat Simple_repeat 1 448 0 426 304 93 20 chr4 1422221 1422468 -182866194 - L2 LINE L2 -205 3108 2844 334 273 161 14 chr4 1422561 1422847 -182865815 - L2 LINE L2 -739 2575 2248 205 188 0 42 chr4 1423516 1423564 -182865098 + G-rich Low_complexity Low_complexity 6 51 0 317 324 20 7 chr4 1425535 1425683 -182862979 + (TGGA)n Simple_repeat Simple_repeat 3 152 0 583 314 144 14 chr4 1426408 1426484 -182862178 - L1MC4a LINE L1 -1586 6222 6157 2061 138 7 0 chr4 1426484 1426788 -182861874 + AluJb SINE Alu 1 306 -6 583 314 144 14 chr4 1426788 1426988 -182861674 - L1MC4a LINE L1 -1651 6157 5910 678 292 33 30 chr4 1427134 1427435 -182861227 - L1MC4a LINE L1 -2209 5599 5298 1272 112 6 0 chr4 1427523 1427702 -182860960 - AluSg/x SINE Alu -15 297 118 474 114 0 0 chr4 1427702 1427772 -182860890 - Alu SINE Alu -9 303 234 1397 193 4 40 chr4 1477807 1477989 -182810673 - AluJo SINE Alu -13 299 129 2523 63 3 3 chr4 1477989 1478290 -182810372 + AluY SINE Alu 1 301 -10 1397 193 4 40 chr4 1478290 1478382 -182810280 - AluJo SINE Alu -183 129 35 266 278 81 40 chr4 1479211 1479384 -182809278 - L2 LINE L2 -179 3093 2914 1952 99 0 8 chr4 1479588 1479840 -182808822 + AluSg SINE Alu 55 304 -6 1799 119 0 4 chr4 1479907 1480160 -182808502 - AluSg SINE Alu -3 307 56 4535 77 0 13 chr4 1480191 1480448 -182808214 - LTR10C LTR ERV1 0 591 332 2408 75 0 13 chr4 1480448 1480755 -182807907 - AluY SINE Alu -8 303 1 4535 77 0 13 chr4 1480755 1481096 -182807566 - LTR10C LTR ERV1 -259 332 1 276 300 192 23 chr4 1481511 1481641 -182807021 - MIR SINE MIR -51 211 60 2170 89 7 33 chr4 1481705 1482007 -182806655 - AluSq SINE Alu -19 294 1 2120 129 0 0 chr4 1482548 1482835 -182805827 - AluSg SINE Alu -23 287 1 2403 98 0 3 chr4 1483705 1484011 -182804651 - AluY SINE Alu -6 305 1 2178 118 3 13 chr4 1484259 1484564 -182804098 - AluSx SINE Alu -10 302 1 23 0 0 0 chr4 1484682 1484705 -182803957 + AT_rich Low_complexity Low_complexity 1 23 0 852 187 177 5 chr4 1484785 1484983 -182803679 + AluSg/x SINE Alu 65 296 -13 693 148 0 43 chr4 1485021 1485136 -182803526 - AluSg/x SINE Alu -125 187 78 1359 152 9 5 chr4 1485136 1485347 -182803315 - AluSx SINE Alu -100 212 1 780 90 57 0 chr4 1485348 1485470 -182803192 - L1MA8 LINE L1 -47 6244 6116 345 278 86 48 chr4 1485483 1485522 -182803140 - L1M4 LINE L1 -813 5333 5297 2237 136 0 0 chr4 1485522 1485832 -182802830 - AluSx SINE Alu -2 310 1 1596 175 73 0 chr4 1485836 1486110 -182802552 - AluJb SINE Alu -18 294 1 345 278 86 48 chr4 1486110 1486274 -182802388 - L1M4 LINE L1 -851 5295 5117 1909 139 42 0 chr4 1486301 1486421 -182802241 + AluSx SINE Alu 1 115 -197 210 37 0 0 chr4 1486421 1486448 -182802214 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1909 139 42 0 chr4 1486448 1486614 -182802048 + AluSx SINE Alu 115 299 -13 314 371 59 8 chr4 1486811 1487067 -182801595 - L1MC4 LINE L1 -1006 7036 6768 822 177 15 0 chr4 1487113 1487243 -182801419 - AluSq/x SINE Alu -180 132 1 846 160 0 0 chr4 1487305 1487430 -182801232 + FLAM_C SINE Alu 1 125 -18 2264 85 3 0 chr4 1487434 1487729 -182800933 - AluSp SINE Alu -17 296 1 1824 144 34 0 chr4 1487861 1488152 -182800510 - AluJo SINE Alu -11 301 1 228 285 46 54 chr4 1488793 1488923 -182799739 - MIR SINE MIR -62 146 18 325 278 11 30 chr4 1489176 1489323 -182799339 - L1MC3 LINE L1 0 7783 6207 294 231 0 0 chr4 1489332 1489384 -182799278 - MLT1C LTR MaLR 0 467 416 372 328 87 18 chr4 1491409 1491638 -182797024 - L1MC4 LINE L1 -93 7949 7705 2055 82 43 4 chr4 1491655 1491935 -182796727 - AluSc SINE Alu -5 304 14 1110 153 16 0 chr4 1492908 1493098 -182795564 + AluJb SINE Alu 120 312 0 21 0 0 0 chr4 1493376 1493397 -182795265 + GC_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 1493933 1493962 -182794700 + GC_rich Low_complexity Low_complexity 1 29 0 315 196 9 103 chr4 1494045 1494152 -182794510 + MER53 DNA DNA 93 189 0 187 360 10 20 chr4 1494394 1494494 -182794168 - MIR SINE MIR -78 184 86 2050 97 20 17 chr4 1495116 1495415 -182793247 + AluSq SINE Alu 1 300 -13 263 224 40 13 chr4 1495522 1495598 -182793064 - MLT1K LTR MaLR -63 525 448 1364 187 128 8 chr4 1495992 1496434 -182792228 + MLT1H LTR MaLR 1 541 -8 196 162 54 0 chr4 1496928 1496965 -182791697 - MER5A DNA MER1_type -87 102 64 1294 147 9 0 chr4 1497110 1497321 -182791341 - AluJo SINE Alu -14 298 86 1436 176 56 18 chr4 1497466 1497632 -182791030 - AluJb SINE Alu -17 295 112 414 0 0 0 chr4 1497632 1497678 -182790984 + (TG)n Simple_repeat Simple_repeat 1 46 0 1436 176 56 18 chr4 1497678 1497795 -182790867 - AluJb SINE Alu -200 112 1 1661 166 0 35 chr4 1498089 1498402 -182790260 + AluJb SINE Alu 1 302 -10 2319 28 0 24 chr4 1498404 1498719 -182789943 + AluY SINE Alu 3 310 0 1799 80 0 16 chr4 1498918 1499167 -182789495 + AluSq SINE Alu 1 245 -68 23 0 0 0 chr4 1499903 1499926 -182788736 + GC_rich Low_complexity Low_complexity 1 23 0 363 235 0 24 chr4 1501198 1501283 -182787379 - MIR SINE MIR -76 132 50 386 267 80 13 chr4 1501525 1501675 -182786987 - MER106B DNA MER1_type -4 1055 896 185 182 164 0 chr4 1501706 1501761 -182786901 - L2 LINE L2 -18 3295 3232 10379 117 56 114 chr4 1501810 1501973 -182786689 + Tigger1 DNA MER2_type 26 197 -2221 2151 116 0 3 chr4 1501973 1502276 -182786386 - AluSx SINE Alu -10 302 1 10379 117 56 114 chr4 1502276 1503480 -182785182 + Tigger1 DNA MER2_type 197 1470 -948 765 125 0 97 chr4 1503480 1503624 -182785038 + FLAM_C SINE Alu 2 131 -12 10379 117 56 114 chr4 1503624 1503766 -182784896 + Tigger1 DNA MER2_type 1470 1619 -799 2265 80 3 0 chr4 1503766 1504065 -182784597 + AluY SINE Alu 3 302 -9 10379 117 56 114 chr4 1504065 1504111 -182784551 + Tigger1 DNA MER2_type 1619 1666 -752 1994 112 7 7 chr4 1504111 1504397 -182784265 + AluSx SINE Alu 8 293 -19 10379 117 56 114 chr4 1504397 1504535 -182784127 + Tigger1 DNA MER2_type 1666 1810 -608 1956 98 25 7 chr4 1504535 1504820 -182783842 + AluSg1 SINE Alu 1 290 -19 1550 141 0 34 chr4 1504829 1505091 -182783571 + AluSx SINE Alu 42 294 -18 2106 98 0 23 chr4 1505092 1505397 -182783265 + AluSg SINE Alu 1 298 -12 10379 117 56 114 chr4 1505397 1505739 -182782923 + Tigger1 DNA MER2_type 1818 2080 -338 2220 95 0 7 chr4 1505739 1506043 -182782619 + AluSp SINE Alu 1 302 -11 10379 117 56 114 chr4 1506043 1506165 -182782497 + Tigger1 DNA MER2_type 2080 2208 -210 1030 172 17 67 chr4 1506165 1506328 -182782334 - AluJo SINE Alu -13 299 129 243 0 0 0 chr4 1506328 1506355 -182782307 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2194 78 0 0 chr4 1506355 1506638 -182782024 - AluY SINE Alu -28 283 1 1030 172 17 67 chr4 1506638 1506711 -182781951 - AluJo SINE Alu -181 131 74 425 245 86 15 chr4 1506765 1506919 -182781743 - MIR SINE MIR -83 179 16 2151 99 10 3 chr4 1507388 1507691 -182780971 - AluSg SINE Alu -5 305 1 509 209 0 26 chr4 1507701 1507816 -182780846 - FAM SINE Alu -2 183 72 327 256 34 0 chr4 1507816 1507846 -182780816 - AluJo/F(R)AM SINE Alu -78 224 196 1640 128 0 0 chr4 1507846 1508081 -182780581 - AluSx SINE Alu -77 235 1 327 256 34 0 chr4 1508081 1508151 -182780511 - AluJo/F(R)AM SINE Alu -106 196 154 2135 112 52 60 chr4 1508151 1508304 -182780358 + THE1B LTR MaLR 1 154 -210 1998 136 3 0 chr4 1508304 1508598 -182780064 + AluSg SINE Alu 1 295 -15 2135 112 52 60 chr4 1508598 1508811 -182779851 + THE1B LTR MaLR 154 364 0 12088 89 8 6 chr4 1508811 1510389 -182778273 + THE1B-int LTR MaLR 1 1580 0 2317 92 66 20 chr4 1510389 1510737 -182777925 + THE1B LTR MaLR 1 364 0 1565 124 14 58 chr4 1510966 1511241 -182777421 - AluJb SINE Alu -49 263 1 2092 121 0 0 chr4 1511268 1511557 -182777105 - AluSx SINE Alu -9 303 15 1362 139 0 9 chr4 1512708 1512924 -182775738 - AluJb SINE Alu -14 298 85 360 335 54 6 chr4 1514067 1514234 -182774428 + L2 LINE L2 3139 3313 0 213 211 57 0 chr4 1514319 1514383 -182774279 - MIR SINE MIR -69 139 70 2048 125 0 0 chr4 1514523 1514811 -182773851 + AluSx SINE Alu 4 291 -21 566 139 73 73 chr4 1514828 1514912 -182773750 - FLAM_C SINE Alu -174 138 52 234 0 0 0 chr4 1514912 1514938 -182773724 + (C)n Simple_repeat Simple_repeat 1 26 0 566 139 73 73 chr4 1514938 1514990 -182773672 - FLAM_C SINE Alu -259 53 2 292 162 88 0 chr4 1515356 1515424 -182773238 + Tigger5 DNA MER2_type 2250 2323 0 188 355 81 17 chr4 1515647 1515819 -182772843 + L2 LINE L2 2569 2751 -563 185 289 289 0 chr4 1516601 1516691 -182771971 - L2 LINE L2 0 3313 3198 197 294 128 0 chr4 1516712 1516814 -182771848 - L2 LINE L2 -875 2439 2325 533 275 54 45 chr4 1516873 1517095 -182771567 + MIR SINE MIR 7 230 -32 1382 184 0 44 chr4 1518010 1518135 -182770527 - AluJb SINE Alu -53 259 130 2126 115 0 7 chr4 1518135 1518440 -182770222 - AluSx SINE Alu -1 311 9 1382 184 0 44 chr4 1518440 1518585 -182770077 - AluJb SINE Alu -182 130 1 1956 97 39 4 chr4 1519043 1519345 -182769317 + AluSx SINE Alu 1 312 0 555 279 60 44 chr4 1519476 1519661 -182769001 - MIR SINE MIR -6 256 64 1955 104 28 17 chr4 1519661 1519979 -182768683 - AluSq SINE Alu 0 313 1 555 279 60 44 chr4 1519979 1520044 -182768618 - MIR SINE MIR -198 64 2 282 206 404 22 chr4 1520320 1520456 -182768206 + MER5A DNA MER1_type 1 188 -1 1230 171 93 8 chr4 1521687 1521944 -182766718 + AluJo SINE Alu 1 279 -33 1286 155 5 0 chr4 1522103 1522316 -182766346 - AluSg/x SINE Alu -12 300 87 1878 117 57 0 chr4 1522317 1522600 -182766062 - AluSq SINE Alu -14 299 1 360 152 0 0 chr4 1522601 1522667 -182765995 - Alu SINE Alu -3 299 234 30 69 0 0 chr4 1723909 1723967 -182564695 + GC_rich Low_complexity Low_complexity 1 58 0 298 284 34 0 chr4 1724774 1724862 -182563800 + L2 LINE L2 3223 3313 0 330 221 147 30 chr4 1727577 1727711 -182560951 + MIR SINE MIR 14 160 -61 333 332 27 76 chr4 1729983 1730206 -182558456 - L1MCa LINE L1 -4002 2642 2431 280 281 21 0 chr4 1731240 1731336 -182557326 - MLT1C LTR MaLR -40 427 330 237 206 0 55 chr4 1731359 1731432 -182557230 - MLT1C LTR MaLR -222 152 84 1377 65 45 10 chr4 1733470 1733669 -182554993 + AluY SINE Alu 106 311 0 331 346 39 82 chr4 1736771 1737077 -182551585 - L1MCa LINE L1 -5062 1480 1188 767 124 0 0 chr4 1742651 1742756 -182545906 + AluJo/FLAM SINE Alu 6 110 -202 1552 70 0 0 chr4 1742758 1742945 -182545717 - AluSp SINE Alu -19 294 108 2120 130 0 0 chr4 1743208 1743508 -182545154 - AluJo SINE Alu -12 300 1 732 254 10 38 chr4 1745621 1745743 -182542919 + MLT1A1 LTR MaLR 163 278 -87 2394 61 3 0 chr4 1745743 1746038 -182542624 - AluY SINE Alu -15 296 1 732 254 10 38 chr4 1746038 1746124 -182542538 + MLT1A1 LTR MaLR 278 365 0 2124 114 7 3 chr4 1746692 1746999 -182541663 + AluSx SINE Alu 1 308 -4 211 367 8 0 chr4 1747315 1747443 -182541219 + (TG)n Simple_repeat Simple_repeat 1 129 0 1621 188 7 10 chr4 1747568 1747866 -182540796 + AluJo SINE Alu 3 299 -13 1962 120 0 0 chr4 1748469 1748744 -182539918 + AluSq SINE Alu 1 275 -38 543 227 0 0 chr4 1748749 1748877 -182539785 + G-rich Low_complexity Low_complexity 4 131 0 207 204 0 0 chr4 1748879 1748928 -182539734 + GA-rich Low_complexity Low_complexity 1 49 0 499 289 127 9 chr4 1749082 1749310 -182539352 + MLT1F1 LTR MaLR 32 286 -281 850 120 0 0 chr4 1751328 1751445 -182537217 + AluSg/x SINE Alu 174 290 -20 2276 94 0 0 chr4 1752069 1752376 -182536286 + AluY SINE Alu 1 307 -4 2010 144 0 10 chr4 1752419 1752554 -182536108 + AluJb SINE Alu 1 136 -176 2353 54 30 0 chr4 1752554 1752852 -182535810 + AluY SINE Alu 1 307 -4 2010 144 0 10 chr4 1752852 1753028 -182535634 + AluJb SINE Alu 136 309 -3 259 211 40 26 chr4 1754231 1754307 -182534355 + G-rich Low_complexity Low_complexity 3 79 0 224 254 42 14 chr4 1758438 1758509 -182530153 + MIR SINE MIR 111 183 -79 21 0 0 0 chr4 1759003 1759024 -182529638 + AT_rich Low_complexity Low_complexity 1 21 0 707 175 83 0 chr4 1759888 1760008 -182528654 + FLAM_C SINE Alu 2 131 -2 1038 255 163 12 chr4 1761455 1761878 -182526784 + MLT1D LTR MaLR 2 488 -17 328 233 17 58 chr4 1762010 1762130 -182526532 - LTR33 LTR ERVL -363 158 44 1946 127 7 0 chr4 1762493 1762776 -182525886 + AluSx SINE Alu 15 299 -13 2157 47 0 0 chr4 1763587 1763844 -182524818 - AluY SINE Alu -53 258 2 228 196 185 0 chr4 1770189 1770281 -182518381 - L2 LINE L2 -305 3008 2900 444 311 96 47 chr4 1770604 1770698 -182517964 + L1M4 LINE L1 2682 2770 -3376 2466 58 0 13 chr4 1770698 1771008 -182517654 + AluY SINE Alu 1 306 -5 444 311 96 47 chr4 1771008 1771266 -182517396 + L1M4 LINE L1 2770 3014 -3132 1820 169 0 7 chr4 1771266 1771567 -182517095 + AluJo SINE Alu 1 299 -13 444 311 96 47 chr4 1771567 1771915 -182516747 + L1M4 LINE L1 3014 3343 -2803 2312 93 0 6 chr4 1771915 1772226 -182516436 - AluSq SINE Alu -4 309 1 444 311 96 47 chr4 1772226 1772375 -182516287 + L1M4 LINE L1 3343 3679 -2467 240 333 70 34 chr4 1773168 1773582 -182515080 - L1M4c LINE L1 -2919 3463 3035 377 362 0 18 chr4 1773742 1773905 -182514757 + (TG)n Simple_repeat Simple_repeat 1 160 0 265 353 6 18 chr4 1773940 1774107 -182514555 + (TG)n Simple_repeat Simple_repeat 2 166 0 1214 238 18 13 chr4 1774343 1774651 -182514011 - MLT1B LTR MaLR -7 460 75 2127 120 0 3 chr4 1774656 1774956 -182513706 - AluSx SINE Alu -13 299 1 369 339 110 33 chr4 1774959 1775216 -182513446 - L1M4c LINE L1 -4841 1543 1288 895 205 0 0 chr4 1775774 1775940 -182512722 - AluJb SINE Alu -10 302 137 610 231 134 17 chr4 1775943 1776181 -182512481 - L1MB5 LINE L1 -27 6147 5882 453 267 48 0 chr4 1776367 1776532 -182512130 + MER58A DNA MER1_type 3 175 -49 225 114 0 0 chr4 1777063 1777098 -182511564 - Alu SINE Alu -62 71 37 2228 94 3 13 chr4 1778817 1779116 -182509546 + AluSp SINE Alu 1 296 -17 23 0 0 0 chr4 1779519 1779542 -182509120 + GC_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 1779737 1779760 -182508902 + GC_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 1779849 1779872 -182508790 + GC_rich Low_complexity Low_complexity 1 23 0 283 209 104 0 chr4 1781785 1781978 -182506684 + (CGGGG)n Simple_repeat Simple_repeat 1 213 0 237 159 29 14 chr4 1785570 1785639 -182503023 + G-rich Low_complexity Low_complexity 3 72 0 2252 89 16 0 chr4 1792115 1792290 -182496372 - AluSx SINE Alu -4 308 124 2132 86 0 4 chr4 1792290 1792569 -182496093 - AluY SINE Alu -13 298 21 2252 89 16 0 chr4 1792569 1792696 -182495966 - AluSx SINE Alu -188 124 1 444 247 12 29 chr4 1794816 1794986 -182493676 + GA-rich Low_complexity Low_complexity 5 171 0 202 35 0 0 chr4 1795015 1795044 -182493618 + L2 LINE L2 3028 3056 -216 22 35 0 0 chr4 1795942 1795971 -182492691 + AT_rich Low_complexity Low_complexity 1 29 0 188 67 33 0 chr4 1796580 1796610 -182492052 + (TA)n Simple_repeat Simple_repeat 2 32 0 303 28 0 0 chr4 1797084 1797120 -182491542 + (CA)n Simple_repeat Simple_repeat 1 36 0 23 0 0 0 chr4 1798666 1798689 -182489973 + GC_rich Low_complexity Low_complexity 1 23 0 201 159 0 0 chr4 1802644 1802688 -182485974 + C-rich Low_complexity Low_complexity 2 45 0 414 309 92 32 chr4 1805324 1805606 -182483056 - MER58B DNA MER1_type 0 341 43 206 341 143 0 chr4 1808133 1808224 -182480438 - MIR SINE MIR -51 211 108 24 53 0 0 chr4 1808985 1809023 -182479639 + GC_rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr4 1809360 1809385 -182479277 + GC_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr4 1809407 1809435 -182479227 + GC_rich Low_complexity Low_complexity 1 28 0 444 79 56 45 chr4 1813460 1813638 -182475024 + (TG)n Simple_repeat Simple_repeat 1 180 0 409 53 77 41 chr4 1813667 1813836 -182474826 + (TG)n Simple_repeat Simple_repeat 1 175 0 558 102 72 23 chr4 1813855 1814300 -182474362 + (TG)n Simple_repeat Simple_repeat 1 466 0 571 85 79 13 chr4 1814321 1814628 -182474034 + (TG)n Simple_repeat Simple_repeat 1 327 0 2167 120 0 0 chr4 1815029 1815328 -182473334 - AluSq SINE Alu -14 299 1 2138 92 7 26 chr4 1815337 1815641 -182473021 - AluSg SINE Alu -12 298 1 2246 104 3 3 chr4 1815782 1816091 -182472571 + AluSx SINE Alu 2 310 -2 210 206 15 84 chr4 1816479 1816610 -182472052 + (CACGC)n Simple_repeat Simple_repeat 2 123 0 274 223 170 0 chr4 1816769 1816881 -182471781 - MLT1A1 LTR MaLR -126 441 311 2334 68 0 7 chr4 1819567 1819863 -182468799 - AluY SINE Alu -17 294 1 27 0 0 0 chr4 1819873 1819900 -182468762 + AT_rich Low_complexity Low_complexity 1 27 0 2079 110 0 32 chr4 1819934 1820244 -182468418 - AluY SINE Alu -11 300 1 1189 211 32 26 chr4 1821603 1821915 -182466747 - MLT1A1 LTR MaLR -48 317 4 1940 110 52 0 chr4 1821939 1822230 -182466432 + AluSq SINE Alu 1 306 -7 1358 179 44 4 chr4 1822266 1822518 -182466144 + AluJb SINE Alu 27 288 -24 2090 88 27 7 chr4 1822532 1822826 -182465836 + AluY SINE Alu 1 300 -11 222 275 0 43 chr4 1822834 1822903 -182465759 + L2 LINE L2 1127 1192 -2122 377 293 60 0 chr4 1823775 1823954 -182464708 + L1MD1 LINE L1 5763 5967 -275 1582 149 0 71 chr4 1823972 1824128 -182464534 + AluJo SINE Alu 1 124 -188 2116 120 7 0 chr4 1824128 1824429 -182464233 + AluSq SINE Alu 5 307 -6 1582 149 0 71 chr4 1824429 1824594 -182464068 + AluJo SINE Alu 124 299 -13 2218 181 5 74 chr4 1824591 1824840 -182463822 + L1M4 LINE L1 5272 5464 -720 2014 93 24 17 chr4 1824840 1825131 -182463531 + AluY SINE Alu 1 293 -18 2218 181 5 74 chr4 1825131 1825435 -182463227 + L1M4 LINE L1 5464 5787 -397 321 312 48 0 chr4 1825466 1825591 -182463071 + MER3 DNA MER1_type 1 131 -78 832 144 0 14 chr4 1825614 1825753 -182462909 + AluJo SINE Alu 1 137 -175 615 236 59 74 chr4 1826048 1826319 -182462343 + L1MC5 LINE L1 7603 7869 -92 2151 122 0 3 chr4 1826623 1826935 -182461727 + AluSx SINE Alu 1 311 -1 2189 101 0 19 chr4 1826960 1827267 -182461395 + AluSx SINE Alu 1 301 -11 1002 151 6 0 chr4 1827273 1827439 -182461223 + AluSg/x SINE Alu 140 306 -6 547 156 249 4 chr4 1827756 1827906 -182460756 + L1PA16 LINE L1 5997 6150 -16 227 83 0 0 chr4 1827903 1827939 -182460723 + L1PA16 LINE L1 6115 6150 -16 * 227 83 0 0 chr4 1828002 1828038 -182460624 + L1PA16 LINE L1 6115 6150 -16 227 83 0 0 chr4 1828067 1828103 -182460559 + L1PA16 LINE L1 6115 6150 -16 227 83 0 0 chr4 1828226 1828262 -182460400 + L1PA16 LINE L1 6115 6150 -16 323 77 0 19 chr4 1828325 1828377 -182460285 + L1PA16 LINE L1 6115 6165 -1 1823 124 27 17 chr4 1828647 1828775 -182459887 + AluSx SINE Alu 1 126 -186 2325 93 0 0 chr4 1828775 1829076 -182459586 + AluSg SINE Alu 1 301 -9 1823 124 27 17 chr4 1829076 1829245 -182459417 + AluSx SINE Alu 126 301 -11 2204 78 7 0 chr4 1830074 1830367 -182458295 - AluSx SINE Alu -17 295 1 364 308 134 32 chr4 1831538 1831785 -182456877 + HAL1 LINE L1 806 1077 -1430 252 216 51 57 chr4 1832783 1832959 -182455703 + (CCCCAG)n Simple_repeat Simple_repeat 3 177 0 211 225 39 77 chr4 1833101 1833283 -182455379 + (CCCCAG)n Simple_repeat Simple_repeat 3 177 0 257 225 62 38 chr4 1833340 1833500 -182455162 + (CCCCAG)n Simple_repeat Simple_repeat 1 164 0 262 160 147 0 chr4 1833825 1833900 -182454762 + L1MC4 LINE L1 6828 6913 -1129 204 311 0 17 chr4 1834131 1834311 -182454351 + (CCCA)n Simple_repeat Simple_repeat 4 180 0 439 295 156 19 chr4 1834391 1834683 -182453979 + L1MC4a LINE L1 7050 7421 -387 2213 112 0 10 chr4 1834683 1834996 -182453666 - AluSx SINE Alu -2 310 1 439 295 156 19 chr4 1834996 1835133 -182453529 + L1MC4a LINE L1 7421 7538 -270 2066 103 0 7 chr4 1835374 1835664 -182452998 + AluSc SINE Alu 1 288 -21 1436 228 45 75 chr4 1835952 1836309 -182452353 - MLT1C LTR MaLR -14 453 112 2291 91 0 0 chr4 1836309 1836605 -182452057 + AluY SINE Alu 1 296 -15 1436 228 45 75 chr4 1836605 1836711 -182451951 - MLT1C LTR MaLR -355 112 4 216 246 49 0 chr4 1836971 1837032 -182451630 - L2 LINE L2 -244 3069 3006 1173 196 21 60 chr4 1838036 1838424 -182450238 - MLT1C LTR MaLR -21 369 3 1524 127 0 0 chr4 1839664 1839884 -182448778 + AluSg/x SINE Alu 79 298 -12 2190 210 33 48 chr4 1839885 1840013 -182448649 + L1MC1 LINE L1 4648 4776 -1370 1220 205 110 0 chr4 1840013 1840276 -182448386 + AluJo SINE Alu 3 294 -18 2190 210 33 48 chr4 1840276 1840461 -182448201 + L1MC1 LINE L1 4776 4962 -1184 2092 127 0 0 chr4 1840461 1840753 -182447909 + AluSx SINE Alu 1 292 -20 2190 210 33 48 chr4 1840753 1841106 -182447556 + L1MC1 LINE L1 4962 5305 -841 1439 123 5 9 chr4 1841108 1841328 -182447334 + AluSg/x SINE Alu 85 303 -9 2184 90 17 0 chr4 1841328 1841628 -182447034 + AluSq SINE Alu 1 305 -8 1792 114 95 0 chr4 1841687 1841960 -182446702 + AluSx SINE Alu 1 299 -13 2377 69 7 0 chr4 1841962 1842266 -182446396 + AluSp SINE Alu 3 308 -5 3380 171 57 26 chr4 1842272 1843008 -182445654 + L1MC1 LINE L1 5431 6257 -76 1657 134 0 4 chr4 1843024 1843271 -182445391 - AluSq SINE Alu -20 293 48 252 65 0 0 chr4 1843271 1843302 -182445360 - LTR13 LTR ERVK -2 1005 975 414 133 0 0 chr4 1843303 1843363 -182445299 - AluJ/FLAM SINE Alu -252 60 1 1491 127 0 25 chr4 1843487 1843724 -182444938 - AluJb SINE Alu -81 231 1 241 284 47 112 chr4 1843840 1844072 -182444590 + MIR SINE MIR 16 232 -30 2318 94 0 0 chr4 1844174 1844483 -182444179 - AluSc SINE Alu 0 309 1 701 93 28 0 chr4 1845344 1845452 -182443210 - HY1 scRNA scRNA -1 111 1 232 185 59 25 chr4 1846248 1846367 -182442295 + (CCG)n Simple_repeat Simple_repeat 1 123 0 2252 75 19 7 chr4 1847960 1848268 -182440394 + AluSq SINE Alu 1 312 -1 256 226 12 0 chr4 1848543 1848611 -182440051 - MIR SINE MIR -59 149 94 1109 175 137 0 chr4 1848895 1849157 -182439505 + L1MB5 LINE L1 5877 6174 0 2265 101 0 0 chr4 1849164 1849471 -182439191 + AluSg SINE Alu 1 307 -3 348 205 0 12 chr4 1849628 1849711 -182438951 - L1M4 LINE L1 -3541 2605 2524 2429 62 0 3 chr4 1849711 1850018 -182438644 - AluY SINE Alu -3 308 3 2028 222 83 54 chr4 1850020 1850057 -182438605 - L1M4 LINE L1 -945 5201 5167 1769 142 0 68 chr4 1850057 1850228 -182438434 - AluJo SINE Alu -10 302 121 207 0 0 0 chr4 1850228 1850251 -182438411 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1998 98 29 0 chr4 1850251 1850528 -182438134 - AluSp SINE Alu -28 285 1 2069 111 10 0 chr4 1850535 1850832 -182437830 - AluSp SINE Alu -13 300 1 1769 142 0 68 chr4 1850832 1850975 -182437687 - AluJo SINE Alu -196 116 1 2028 222 83 54 chr4 1850975 1851247 -182437415 - L1M4 LINE L1 -979 5167 4904 2418 72 3 0 chr4 1851247 1851554 -182437108 - AluY SINE Alu -3 308 1 2028 222 83 54 chr4 1851554 1851861 -182436801 - L1M4 LINE L1 -1242 4904 4607 2087 115 3 3 chr4 1851861 1852157 -182436505 - AluSx SINE Alu -15 297 2 2252 90 7 0 chr4 1852166 1852465 -182436197 - AluSp SINE Alu -12 301 1 2028 222 83 54 chr4 1852465 1852610 -182436052 - L1M4 LINE L1 -1546 4600 4406 201 74 0 0 chr4 1852717 1852744 -182435918 + (CA)n Simple_repeat Simple_repeat 1 27 0 1495 135 41 4 chr4 1853178 1853423 -182435239 + AluSx SINE Alu 1 254 -58 2043 125 16 0 chr4 1854266 1854571 -182434091 + AluSp SINE Alu 1 310 -3 2030 132 0 0 chr4 1855991 1856286 -182432376 - AluSx SINE Alu -16 296 2 2096 125 3 0 chr4 1856292 1856595 -182432067 - AluSx SINE Alu -8 304 1 1799 119 81 0 chr4 1857422 1857707 -182430955 + AluSg SINE Alu 1 308 -2 184 67 0 67 chr4 1857825 1857870 -182430792 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 714 191 23 23 chr4 1858367 1858498 -182430164 + FLAM_C SINE Alu 3 133 0 2147 107 3 0 chr4 1858520 1858820 -182429842 + AluSx SINE Alu 1 301 -11 1467 169 0 8 chr4 1858833 1859088 -182429574 + AluSx SINE Alu 55 307 -5 2110 105 7 3 chr4 1859088 1859392 -182429270 + AluSx SINE Alu 1 306 -6 25 0 0 0 chr4 1859424 1859449 -182429213 + AT_rich Low_complexity Low_complexity 1 25 0 2117 86 10 10 chr4 1859459 1859749 -182428913 + AluSp SINE Alu 1 290 -23 1223 178 53 76 chr4 1859758 1859980 -182428682 + AluJo SINE Alu 2 217 -95 1658 123 100 0 chr4 1859980 1860241 -182428421 + AluSg SINE Alu 1 287 -23 1223 178 53 76 chr4 1860241 1860322 -182428340 + AluJo SINE Alu 217 298 -14 2109 110 0 0 chr4 1860390 1860682 -182427980 - AluY SINE Alu -19 292 1 1546 172 46 11 chr4 1860692 1860977 -182427685 - AluJo SINE Alu -17 295 1 1073 232 84 62 chr4 1862085 1862463 -182426199 - MER119 DNA MER1_type -64 519 128 1467 171 23 37 chr4 1862463 1862762 -182425900 - AluJo SINE Alu -17 295 1 1073 232 84 62 chr4 1862762 1862822 -182425840 - MER119 DNA MER1_type -455 128 71 379 224 10 31 chr4 1862868 1862966 -182425696 + MER105 DNA DNA 66 161 -43 2288 81 3 3 chr4 1863032 1863340 -182425322 - AluSp SINE Alu 0 313 6 2099 131 0 0 chr4 1863523 1863829 -182424833 + AluSx SINE Alu 1 306 -6 2154 91 34 0 chr4 1864863 1865159 -182423503 + AluSg SINE Alu 1 306 -4 721 181 129 23 chr4 1865244 1865415 -182423247 - MER5A DNA MER1_type 0 189 1 707 163 7 71 chr4 1865685 1865826 -182422836 + AluJo SINE Alu 5 136 -176 2135 120 3 0 chr4 1866826 1867127 -182421535 - AluSp SINE Alu -9 304 3 917 188 33 0 chr4 1867713 1867894 -182420768 + AluJb SINE Alu 103 289 -23 1696 140 21 11 chr4 1867913 1868198 -182420464 + AluSx SINE Alu 10 297 -15 1518 136 19 76 chr4 1868434 1868751 -182419911 + AluSx SINE Alu 9 307 -5 1760 107 80 50 chr4 1868755 1868840 -182419822 + AluSx SINE Alu 3 84 -228 2784 13 0 0 chr4 1868840 1869153 -182419509 + AluYb8 SINE Alu 1 313 -5 1760 107 80 50 chr4 1869153 1869366 -182419296 + AluSx SINE Alu 84 310 -2 1720 143 10 31 chr4 1869518 1869657 -182419005 + AluSg SINE Alu 1 141 -169 2280 99 0 0 chr4 1869657 1869959 -182418703 + AluSg SINE Alu 6 307 -3 1720 143 10 31 chr4 1869959 1870112 -182418550 + AluSg SINE Alu 141 287 -23 223 260 61 21 chr4 1870693 1870837 -182417825 - L2 LINE L2 -363 2951 2732 1467 86 15 0 chr4 1870915 1871113 -182417549 - AluSp SINE Alu -6 307 107 3318 90 96 29 chr4 1871113 1871467 -182417195 + LTR14 LTR ERVK 2 402 -146 2296 71 10 0 chr4 1871467 1871764 -182416898 - AluY SINE Alu -11 300 1 3318 90 96 29 chr4 1871764 1871922 -182416740 + LTR14 LTR ERVK 402 548 0 825 97 0 0 chr4 1871922 1872035 -182416627 - AluSp SINE Alu -200 113 1 535 268 153 25 chr4 1872037 1872284 -182416378 + L2 LINE L2 2192 2503 -811 2278 119 112 52 chr4 1872284 1872624 -182416038 - MER4C LTR ERV1 0 465 92 2251 100 0 3 chr4 1872624 1872933 -182415729 + AluSx SINE Alu 1 308 -4 2278 119 112 52 chr4 1872933 1873030 -182415632 - MER4C LTR ERV1 -373 92 2 535 268 153 25 chr4 1873030 1873148 -182415514 + L2 LINE L2 2503 2604 -710 255 196 41 31 chr4 1874036 1874133 -182414529 + (CAGGG)n Simple_repeat Simple_repeat 4 101 0 27 49 0 0 chr4 1874206 1874247 -182414415 + GC_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr4 1874445 1874467 -182414195 + GC_rich Low_complexity Low_complexity 1 22 0 282 212 0 30 chr4 1874768 1874834 -182413828 + MLT1F1 LTR MaLR 504 567 0 356 133 13 67 chr4 1875450 1875472 -182413190 + MER49 LTR ERV1 1 23 -900 2011 108 35 0 chr4 1875472 1875759 -182412903 + AluSp SINE Alu 1 297 -16 356 133 13 67 chr4 1875759 1875811 -182412851 + MER49 LTR ERV1 23 71 -852 * 997 125 54 6 chr4 1875810 1875978 -182412684 + MER49 LTR ERV1 221 396 -527 667 181 22 58 chr4 1875979 1876117 -182412545 + AluJo/FLAM SINE Alu 1 133 -179 1912 149 3 3 chr4 1876117 1876412 -182412250 + AluJo SINE Alu 1 295 -17 1619 124 45 30 chr4 1876417 1876823 -182411839 + MER49 LTR ERV1 391 859 -64 751 90 20 0 chr4 1876829 1876929 -182411733 - AluSg/x SINE Alu -20 289 188 216 254 18 0 chr4 1877013 1877068 -182411594 + L2 LINE L2 3209 3264 -8 474 171 51 0 chr4 1880894 1881011 -182407651 + L1MC4 LINE L1 6889 7011 -1031 1775 78 130 11 chr4 1881129 1881399 -182407263 + AluSc SINE Alu 1 302 -7 21 0 0 0 chr4 1882724 1882745 -182405917 + GC_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr4 1882780 1882809 -182405853 + GC_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr4 1882826 1882851 -182405811 + GC_rich Low_complexity Low_complexity 1 25 0 226 149 0 21 chr4 1883465 1883512 -182405150 + (CCCCG)n Simple_repeat Simple_repeat 3 48 0 191 262 0 0 chr4 1884129 1884171 -182404491 + L2 LINE L2 2430 2471 -843 2258 76 0 13 chr4 1885738 1886041 -182402621 - AluY SINE Alu -12 299 1 1373 70 0 16 chr4 1886149 1886335 -182402327 - AluY SINE Alu -2 309 127 977 155 7 0 chr4 1886541 1886696 -182401966 - AluJb SINE Alu -23 289 134 2284 82 7 3 chr4 1886696 1887001 -182401661 - AluSp SINE Alu -7 306 1 665 215 20 51 chr4 1888517 1888617 -182400045 + MER54B LTR ERVL 494 587 -206 2149 103 10 13 chr4 1888617 1888928 -182399734 + AluSq SINE Alu 2 311 -2 665 215 20 51 chr4 1888928 1889022 -182399640 + MER54B LTR ERVL 587 682 -111 717 191 106 11 chr4 1889235 1889423 -182399239 + MER54A LTR ERVL 669 874 -27 6371 112 52 20 chr4 1890997 1891765 -182396897 - LTR13 LTR ERVK 0 1007 200 2249 72 10 7 chr4 1891765 1892069 -182396593 - AluY SINE Alu -5 306 2 6371 112 52 20 chr4 1892069 1892276 -182396386 - LTR13 LTR ERVK -807 200 1 2038 116 14 0 chr4 1893374 1893667 -182394995 - AluSx SINE Alu -15 297 1 1565 267 107 2 chr4 1894438 1895019 -182393643 - L1MB7 LINE L1 -265 5919 5278 1575 173 35 35 chr4 1895107 1895419 -182393243 + AluJo SINE Alu 1 312 0 2288 105 3 0 chr4 1895429 1895734 -182392928 + AluSx SINE Alu 1 306 -6 2183 118 0 0 chr4 1895925 1896221 -182392441 - AluSx SINE Alu -16 296 1 536 186 31 0 chr4 1896241 1896338 -182392324 + AluJo SINE Alu 38 137 -175 324 206 0 0 chr4 1896339 1896407 -182392255 - L1MB7 LINE L1 -1116 5030 4963 1114 175 113 0 chr4 1896409 1896638 -182392024 - AluJb SINE Alu -16 296 42 324 233 186 0 chr4 1896707 1896836 -182391826 + MER20 DNA MER1_type 2 154 -65 2152 117 10 0 chr4 1897873 1898182 -182390480 + AluSx SINE Alu 1 312 0 672 238 58 0 chr4 1898184 1898356 -182390306 + MER58A DNA MER1_type 2 183 -41 2029 126 3 3 chr4 1898356 1898657 -182390005 + AluSx SINE Alu 1 301 -11 2592 150 38 10 chr4 1900262 1900755 -182387907 - LTR10A LTR ERV1 -21 612 58 2123 94 3 7 chr4 1900755 1901054 -182387608 + AluY SINE Alu 1 298 -13 2592 150 38 10 chr4 1901054 1901114 -182387548 - LTR10A LTR ERV1 -575 58 1 273 206 0 0 chr4 1901525 1901622 -182387040 + C-rich Low_complexity Low_complexity 3 99 0 957 178 0 12 chr4 1903677 1903846 -182384816 + AluJb SINE Alu 141 307 -5 1026 179 11 5 chr4 1904259 1904273 -182384389 + AluSg/x SINE Alu 118 130 -179 1902 115 22 0 chr4 1904273 1904543 -182384119 + AluSx SINE Alu 27 302 -10 1026 179 11 5 chr4 1904543 1904712 -182383950 + AluSg/x SINE Alu 130 302 -7 1982 112 22 0 chr4 1904719 1904997 -182383665 + AluSc SINE Alu 14 297 -12 2302 101 0 0 chr4 1904999 1905305 -182383357 + AluSg SINE Alu 3 308 -2 20407 32 18 0 chr4 1957181 1960292 -182328370 - L1PA4 LINE L1 -246 5909 2746 399 284 11 16 chr4 1960293 1960476 -182328186 + L1MEc LINE L1 2040 2221 -4175 5876 181 40 17 chr4 1960624 1961497 -182327165 - L1MC3 LINE L1 -13 7772 6860 243 0 0 0 chr4 1961497 1961524 -182327138 + (TG)n Simple_repeat Simple_repeat 1 27 0 5876 181 40 17 chr4 1961524 1961906 -182326756 - L1MC3 LINE L1 -925 6860 6488 22 0 0 0 chr4 1961965 1961987 -182326675 + AT_rich Low_complexity Low_complexity 1 22 0 1767 143 3 21 chr4 1962022 1962308 -182326354 - AluJb SINE Alu -31 281 1 419 266 32 19 chr4 1962472 1962626 -182326036 + L1M4 LINE L1 5 160 -6382 701 168 8 46 chr4 1962634 1962765 -182325897 + FLAM_C SINE Alu 5 130 -3 2172 83 0 3 chr4 1962792 1963093 -182325569 + AluY SINE Alu 1 300 -11 1003 110 26 0 chr4 1963316 1963470 -182325192 - AluSx SINE Alu -154 158 1 666 142 130 35 chr4 1963470 1963639 -182325023 - L1M4 LINE L1 -1483 4663 4479 1029 141 56 5 chr4 1963642 1963840 -182324822 + AluJo SINE Alu 13 220 -92 288 146 0 36 chr4 1963840 1963895 -182324767 + FLAM_A SINE Alu 85 131 -2 872 255 60 3 chr4 1963896 1964198 -182324464 - L1M4 LINE L1 -1661 4485 4167 2129 94 3 0 chr4 1964227 1964513 -182324149 + AluSq SINE Alu 1 287 -26 1539 82 0 0 chr4 1964513 1964709 -182323953 + AluSq SINE Alu 79 274 -39 236 250 98 0 chr4 1964739 1964831 -182323831 - L1M4 LINE L1 -1497 4649 4549 1089 144 17 0 chr4 1964913 1965086 -182323576 - AluSg/x SINE Alu -16 296 121 731 120 0 17 chr4 1965087 1965204 -182323458 - AluSg/x SINE Alu -22 288 174 1429 115 23 0 chr4 1965206 1965424 -182323238 - AluSx SINE Alu -89 223 1 624 171 31 8 chr4 1965435 1965564 -182323098 - FLAM_C SINE Alu -1 132 1 919 180 208 12 chr4 1965566 1965821 -182322841 - AluJo SINE Alu -7 305 1 455 366 119 12 chr4 1965840 1966176 -182322486 - L1M4 LINE L1 -1712 4434 4063 549 109 9 118 chr4 1966186 1966296 -182322366 - FLAM_C SINE Alu -16 127 30 325 322 68 25 chr4 1966338 1966574 -182322088 - L1M4 LINE L1 -2125 4021 3776 1318 193 83 20 chr4 1966574 1966922 -182321740 - MER96B DNA MER1_type? 0 417 48 252 242 83 38 chr4 1966902 1967034 -182321628 + MER96B DNA MER1_type? 280 417 0 * 2092 77 10 13 chr4 1967152 1967450 -182321212 - AluY SINE Alu -14 297 1 381 275 46 114 chr4 1967644 1967844 -182320818 - L1ME LINE L1 -5708 362 185 1946 119 11 0 chr4 1967844 1968130 -182320532 + AluSx SINE Alu 9 297 -15 381 275 46 114 chr4 1968130 1968209 -182320453 - L1ME LINE L1 -5885 185 102 650 245 47 62 chr4 1968266 1968289 -182320373 - L1M4 LINE L1 -2103 4043 4021 1653 77 52 3 chr4 1968289 1968575 -182320087 - AluY SINE Alu -11 300 1 650 245 47 62 chr4 1968575 1968890 -182319772 - L1M4 LINE L1 -2125 4021 3710 2001 96 23 3 chr4 1969070 1969373 -182319289 + AluSc SINE Alu 1 309 0 305 251 187 49 chr4 1969515 1969764 -182318898 + MER110 LTR ERV1 97 343 -134 1410 143 24 0 chr4 1969775 1970026 -182318636 + AluJo SINE Alu 39 295 -17 2542 42 0 3 chr4 1970689 1971001 -182317661 + AluY SINE Alu 1 311 0 610 229 8 0 chr4 1971137 1971268 -182317394 - FLAM_A SINE Alu -1 132 1 693 189 26 4 chr4 1971451 1971684 -182316978 + CT-rich Low_complexity Low_complexity 1 238 0 2127 94 17 0 chr4 1971701 1972000 -182316662 - AluY SINE Alu -7 304 1 929 111 6 18 chr4 1972000 1972171 -182316491 + (TTTC)n Simple_repeat Simple_repeat 2 170 0 1849 114 14 0 chr4 1972173 1972453 -182316209 - AluSx SINE Alu -18 294 11 237 194 16 0 chr4 1972470 1972532 -182316130 - L1MB7 LINE L1 0 6184 6122 * 1673 184 19 67 chr4 1972525 1972601 -182316061 + L1 LINE L1 4124 4202 -1944 3575 180 32 58 chr4 1972601 1973581 -182315081 + LTR5 LTR ERVK 2 955 -14 1673 184 19 67 chr4 1973581 1973719 -182314943 + L1 LINE L1 4202 4345 -1801 1881 99 95 0 chr4 1973719 1973992 -182314670 - AluSc SINE Alu -10 299 1 1673 184 19 67 chr4 1973992 1974237 -182314425 + L1 LINE L1 4345 4562 -1584 319 226 0 0 chr4 1974238 1974300 -182314362 + AluS SINE Alu 1 62 -240 1856 197 19 12 chr4 1974300 1974716 -182313946 + L1P LINE L1 4858 5276 -870 10173 130 15 26 chr4 1974716 1976347 -182312315 - PRIMA41-int LTR ERV1 -179 6497 4886 1564 162 12 0 chr4 1976347 1976594 -182312068 + MER52A LTR ERV1 1506 1755 0 6560 130 47 17 chr4 1976604 1977722 -182310940 - THE1-int LTR MaLR 0 1580 430 13640 122 24 6 chr4 1977720 1980340 -182308322 - L1PA10 LINE L1 0 6483 3803 2171 108 3 0 chr4 1980340 1980637 -182308025 - AluSq SINE Alu -15 298 1 13640 122 24 6 chr4 1980637 1981039 -182307623 - L1PA10 LINE L1 -2680 3803 3410 1129 112 0 0 chr4 1981041 1981220 -182307442 + L1P LINE L1 4411 4589 -1557 * 9551 185 21 44 chr4 1981217 1981847 -182306815 - L1PA10 LINE L1 -3051 3410 2768 2213 89 0 4 chr4 1981847 1982171 -182306491 + AluSc SINE Alu 2 324 0 9551 185 21 44 chr4 1982171 1982814 -182305848 - L1PA10 LINE L1 -3693 2768 2112 2155 106 0 20 chr4 1982814 1983117 -182305545 - AluSg SINE Alu -13 297 1 9551 185 21 44 chr4 1983117 1983145 -182305517 - L1PA10 LINE L1 -4349 2112 2085 1512 103 198 12 chr4 1983145 1983397 -182305265 + AluSc SINE Alu 1 299 0 9551 185 21 44 chr4 1983397 1984298 -182304364 - L1PA10 LINE L1 -4376 2085 1287 2140 78 26 19 chr4 1984298 1984606 -182304056 - AluSg SINE Alu 0 310 1 9551 185 21 44 chr4 1984606 1985192 -182303470 - L1PA10 LINE L1 -5174 1287 690 1406 151 0 18 chr4 1985221 1985439 -182303223 - AluSg SINE Alu -96 214 1 1041 338 52 66 chr4 1985611 1986487 -182302175 - PRIMA41-int LTR ERV1 -3193 4563 4101 2162 63 30 0 chr4 1986487 1986787 -182301875 - AluY SINE Alu -2 309 1 1041 338 52 66 chr4 1986787 1987472 -182301190 - PRIMA41-int LTR ERV1 -3655 4101 3408 429 364 31 0 chr4 1987639 1987958 -182300704 + ERVL LTR ERVL 3656 3984 -1780 1379 137 172 15 chr4 1988051 1988388 -182300274 + MSTA LTR MaLR 1 390 -38 710 132 26 0 chr4 1988389 1988503 -182300159 - AluSq/x SINE Alu -196 117 1 286 224 64 32 chr4 1988503 1988628 -182300034 + L1M4 LINE L1 2869 2997 -3149 630 179 94 0 chr4 1988678 1988890 -182299772 + LTR23-int LTR ERV1 2275 2506 -2365 1082 294 86 60 chr4 1989007 1989328 -182299334 - L1M4 LINE L1 -3091 3055 2744 396 0 0 0 chr4 1989328 1989372 -182299290 + (TA)n Simple_repeat Simple_repeat 1 44 0 1516 170 71 32 chr4 1989381 1989663 -182298999 - AluJo SINE Alu -19 293 1 1082 294 86 60 chr4 1989663 1989916 -182298746 - L1M4 LINE L1 -3409 2737 2456 574 212 66 99 chr4 1990190 1990216 -182298446 + LTR23-int LTR ERV1 1522 1547 -6573 2049 122 13 0 chr4 1990216 1990520 -182298142 + AluSx SINE Alu 1 308 -4 574 212 66 99 chr4 1990520 1990629 -182298033 + LTR23-int LTR ERV1 1547 1658 -6462 1775 131 17 14 chr4 1990629 1990919 -182297743 + AluSx SINE Alu 1 291 -21 574 212 66 99 chr4 1990919 1991174 -182297488 + LTR23-int LTR ERV1 1658 1900 -6220 2093 80 0 0 chr4 1991189 1991452 -182297210 - AluSx SINE Alu -24 288 26 30 0 0 0 chr4 1993347 1993377 -182295285 + GC_rich Low_complexity Low_complexity 1 30 0 216 97 0 0 chr4 1993460 1993491 -182295171 + (CTG)n Simple_repeat Simple_repeat 1 31 0 24 32 0 0 chr4 1993505 1993536 -182295126 + GC_rich Low_complexity Low_complexity 1 31 0 639 178 39 0 chr4 1997345 1997474 -182291188 - AluJb SINE Alu -21 291 158 264 253 46 11 chr4 1997987 1998074 -182290588 + (CCCCG)n Simple_repeat Simple_repeat 1 90 0 208 179 0 0 chr4 1998505 1998544 -182290118 + MIR SINE MIR 105 143 -119 335 211 22 11 chr4 1999475 1999565 -182289097 + LTR23 LTR ERV1 340 430 -7 1647 158 22 0 chr4 1999952 2000278 -182288384 + AluSx SINE Alu 1 332 0 1596 156 50 23 chr4 2000711 2001012 -182287650 - AluJb SINE Alu 0 312 4 545 121 20 30 chr4 2001248 2001347 -182287315 + LTR23-int LTR ERV1 1557 1654 -4677 1135 155 15 30 chr4 2001353 2001553 -182287109 + AluJo SINE Alu 91 287 -25 423 0 0 0 chr4 2001566 2001613 -182287049 + (CA)n Simple_repeat Simple_repeat 2 48 0 512 186 18 26 chr4 2001634 2001747 -182286915 - FLAM_C SINE Alu 0 143 32 3696 204 34 38 chr4 2001751 2002668 -182285994 + LTR23-int LTR ERV1 1675 2587 -3744 303 220 193 47 chr4 2002708 2002858 -182285804 + MER34C LTR ERV1 160 331 -254 2389 55 3 0 chr4 2002858 2003151 -182285511 + AluSp SINE Alu 1 294 -19 1309 143 40 48 chr4 2003184 2003435 -182285227 - AluJo SINE Alu -4 308 60 1577 204 59 117 chr4 2003441 2004126 -182284536 + LTR23-int LTR ERV1 1144 1784 -3339 2333 87 10 0 chr4 2004126 2004436 -182284226 + AluSp SINE Alu 1 313 0 1577 204 59 117 chr4 2004436 2004494 -182284168 + LTR23-int LTR ERV1 1784 1844 -3279 2440 70 0 0 chr4 2004503 2004804 -182283858 - AluY SINE Alu -9 302 2 818 221 0 0 chr4 2004808 2004948 -182283714 - FRAM SINE Alu -16 160 21 1949 133 141 21 chr4 2005027 2005409 -182283253 - MSTA LTR MaLR 0 428 1 2463 69 0 0 chr4 2005424 2005730 -182282932 - AluSc SINE Alu -3 306 1 548 210 87 72 chr4 2005821 2005907 -182282755 + LTR23-int LTR ERV1 1925 2008 -3657 2280 76 17 3 chr4 2005907 2006209 -182282453 + AluY SINE Alu 1 306 -5 548 210 87 72 chr4 2006209 2006284 -182282378 + LTR23-int LTR ERV1 2008 2080 -3585 1628 181 0 4 chr4 2006284 2006561 -182282101 + AluJb SINE Alu 13 288 -24 548 210 87 72 chr4 2006561 2006762 -182281900 + LTR23-int LTR ERV1 2080 3708 -1957 2301 84 7 0 chr4 2006831 2007130 -182281532 + AluSp SINE Alu 1 301 -12 893 130 0 36 chr4 2007139 2007277 -182281385 + FLAM_C SINE Alu 1 133 0 2232 101 7 0 chr4 2007943 2008249 -182280413 - AluSx SINE Alu -4 308 1 1653 159 103 58 chr4 2008569 2008985 -182279677 + LTR23 LTR ERV1 1 435 -2 32 0 0 0 chr4 2009491 2009523 -182279139 + GC_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr4 2009650 2009685 -182278977 + GC_rich Low_complexity Low_complexity 1 35 0 304 286 0 39 chr4 2010013 2010090 -182278572 - L1MDa LINE L1 -4037 2503 2430 21 0 0 0 chr4 2010954 2010975 -182277687 + AT_rich Low_complexity Low_complexity 1 21 0 496 265 9 55 chr4 2014486 2014705 -182273957 - AluYa5 SINE Alu -5 306 98 191 36 36 0 chr4 2017807 2017835 -182270827 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2312 101 3 0 chr4 2019335 2019643 -182269019 + AluSc SINE Alu 1 309 0 900 221 82 41 chr4 2019660 2020008 -182268654 - MLT1C LTR MaLR -56 411 42 2871 198 96 14 chr4 2020379 2021100 -182267562 + L1MB7 LINE L1 5348 6127 -57 1020 178 23 0 chr4 2021100 2021274 -182267388 - AluJb SINE Alu -30 282 105 739 104 0 0 chr4 2021274 2021380 -182267282 - FLAM_C SINE Alu -1 142 37 254 153 85 17 chr4 2021407 2021466 -182267196 + L1MB7 LINE L1 6112 6174 -10 322 324 41 14 chr4 2025553 2025698 -182262964 + MIR SINE MIR 37 185 -77 1668 190 122 117 chr4 2025701 2026274 -182262388 - MER70B LTR ERVL -2 576 1 444 67 0 0 chr4 2029061 2029121 -182259541 + (TG)n Simple_repeat Simple_repeat 1 60 0 1573 185 10 89 chr4 2029791 2030085 -182258577 - MLT1B LTR MaLR -16 374 119 1892 148 0 43 chr4 2030085 2030230 -182258432 + AluJo SINE Alu 1 128 -184 2447 80 0 22 chr4 2030230 2030542 -182258120 + AluY SINE Alu 1 305 -6 1892 148 0 43 chr4 2030542 2030701 -182257961 + AluJo SINE Alu 128 292 -20 1573 185 10 89 chr4 2030701 2030812 -182257850 - MLT1B LTR MaLR -271 119 1 384 376 6 0 chr4 2031201 2031363 -182257299 + (CA)n Simple_repeat Simple_repeat 1 163 0 2004 124 0 59 chr4 2032315 2032622 -182256040 + AluSx SINE Alu 2 290 -22 1862 163 3 3 chr4 2033605 2033893 -182254769 + AluJo SINE Alu 1 288 -24 2362 109 0 0 chr4 2033903 2034206 -182254456 + AluSg SINE Alu 1 303 -7 585 0 0 0 chr4 2034212 2034277 -182254385 + (TA)n Simple_repeat Simple_repeat 2 66 0 2425 105 0 0 chr4 2034717 2035022 -182253640 + AluSq SINE Alu 1 305 -8 256 219 0 41 chr4 2037028 2037101 -182251561 + CT-rich Low_complexity Low_complexity 1 70 0 1021 209 67 4 chr4 2037295 2037520 -182251142 - MER8 DNA MER2_type 0 239 1 971 203 30 0 chr4 2037570 2037767 -182250895 + MER21B LTR ERV1 467 669 -194 2192 105 0 0 chr4 2037767 2038044 -182250618 - AluSx SINE Alu -35 277 1 330 241 0 0 chr4 2038044 2038131 -182250531 - L1MEc LINE L1 -1775 4440 4354 3314 197 45 38 chr4 2038149 2038986 -182249676 - MER21B LTR ERV1 -20 843 1 2690 46 0 0 chr4 2038987 2039293 -182249369 - AluY SINE Alu -5 306 1 1016 217 165 37 chr4 2039305 2039409 -182249253 - L1MEc LINE L1 -1856 4359 4270 345 24 0 0 chr4 2039409 2039451 -182249211 + (TG)n Simple_repeat Simple_repeat 2 43 0 1016 217 165 37 chr4 2039451 2039747 -182248915 - L1MEc LINE L1 -1945 4270 3908 232 250 140 20 chr4 2039805 2039905 -182248757 + L2 LINE L2 3193 3304 -9 2123 36 4 4 chr4 2039949 2040223 -182248439 - L1PA3 LINE L1 -2 6153 5880 246 299 56 56 chr4 2040349 2040456 -182248206 - MIR3 SINE MIR -7 201 95 286 254 17 1 chr4 2040744 2040820 -182247842 - MER5B DNA MER1_type -26 163 75 6318 228 66 40 chr4 2040833 2043107 -182245555 - L1MEc LINE L1 -2291 3924 1712 2441 71 0 43 chr4 2043107 2043431 -182245231 - AluY SINE Alu -1 310 1 6318 228 66 40 chr4 2043431 2044260 -182244402 - L1MEc LINE L1 -4503 1712 906 2258 80 42 3 chr4 2044260 2044548 -182244114 - AluY SINE Alu -12 299 1 2368 99 3 13 chr4 2044549 2044863 -182243799 - AluSp SINE Alu -2 311 1 6318 228 66 40 chr4 2044863 2045539 -182243123 - L1MEc LINE L1 -5308 907 34 375 215 84 9 chr4 2045539 2045646 -182243016 - L2 LINE L2 -12 3301 3187 22 35 0 0 chr4 2045974 2046003 -182242659 + AT_rich Low_complexity Low_complexity 1 29 0 411 241 15 53 chr4 2046168 2046301 -182242361 + L1ME LINE L1 5537 5664 -457 928 186 0 0 chr4 2046921 2047082 -182241580 + FRAM SINE Alu 2 162 -14 2090 108 0 0 chr4 2047472 2047740 -182240922 - AluSx SINE Alu -44 268 1 194 195 24 0 chr4 2048418 2048459 -182240203 - MIR SINE MIR -113 149 108 342 139 0 0 chr4 2049516 2049588 -182239074 + (TCCCC)n Simple_repeat Simple_repeat 2 73 0 1855 119 51 10 chr4 2050369 2050663 -182237999 + AluY SINE Alu 4 309 -2 216 0 0 0 chr4 2050858 2050882 -182237780 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1995 128 0 17 chr4 2050884 2051172 -182237490 - AluSx SINE Alu -29 283 1 1543 161 51 11 chr4 2051602 2051875 -182236787 - AluJo SINE Alu -24 288 5 182 224 48 0 chr4 2052416 2052563 -182236099 + (CTCA)n Simple_repeat Simple_repeat 3 156 0 217 203 51 13 chr4 2052579 2052737 -182235925 + (CACCT)n Simple_repeat Simple_repeat 3 166 0 994 224 117 13 chr4 2053951 2054250 -182234412 - LTR53 LTR ERVL 0 519 190 261 55 0 73 chr4 2054610 2054665 -182233997 + (AGGGGG)n Simple_repeat Simple_repeat 2 52 0 342 344 0 16 chr4 2056067 2056250 -182232412 + G-rich Low_complexity Low_complexity 1 180 0 192 314 0 0 chr4 2056785 2056836 -182231826 - L2 LINE L2 -5 3267 3217 185 32 0 65 chr4 2057879 2057910 -182230752 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 715 179 0 0 chr4 2057925 2058042 -182230620 - FLAM_C SINE Alu -25 118 2 367 243 0 42 chr4 2058222 2058366 -182230296 + CT-rich Low_complexity Low_complexity 2 139 0 237 253 6 69 chr4 2058763 2058937 -182229725 + CT-rich Low_complexity Low_complexity 3 165 0 901 203 52 48 chr4 2059121 2059372 -182229290 - L1MB8 LINE L1 -13 6165 5914 250 288 16 24 chr4 2059493 2059618 -182229044 + L1ME LINE L1 5673 5796 -325 311 145 87 0 chr4 2059767 2059836 -182228826 - L1MB4 LINE L1 0 6180 6106 821 110 0 0 chr4 2059867 2059994 -182228668 - L1MB4 LINE L1 -271 5912 5786 2327 211 27 9 chr4 2060025 2060584 -182228078 + L1MB5 LINE L1 4390 4958 -1188 615 126 0 0 chr4 2060615 2060710 -182227952 + MLT2D LTR ERVL 1 95 -319 4333 170 60 9 chr4 2060728 2061623 -182227039 - L1MA7 LINE L1 -10 6281 5341 * 6880 146 39 58 chr4 2061622 2062094 -182226568 + L1 LINE L1 3805 4284 -1862 522 0 0 0 chr4 2062094 2062152 -182226510 + (TA)n Simple_repeat Simple_repeat 2 59 0 2238 110 0 0 chr4 2062152 2062434 -182226228 - AluSg SINE Alu -28 282 1 6880 146 39 58 chr4 2062434 2063485 -182225177 + L1 LINE L1 4282 5301 -845 1684 203 30 0 chr4 2063508 2063808 -182224854 + AluJo SINE Alu 1 309 -3 1482 168 111 0 chr4 2065038 2065335 -182223327 + MLT2D LTR ERVL 77 406 -8 3570 189 83 28 chr4 2065336 2065448 -182223214 + L1MB5 LINE L1 5048 5152 -1022 3394 22 0 0 chr4 2065448 2065858 -182222804 + L1PA2 LINE L1 5746 6155 0 3570 189 83 28 chr4 2065858 2066803 -182221859 + L1MB5 LINE L1 5152 6174 0 283 309 0 0 chr4 2069523 2069607 -182219055 + (CCA)n Simple_repeat Simple_repeat 1 84 0 878 163 42 48 chr4 2070472 2070638 -182218024 - AluJo SINE Alu -142 170 6 2022 89 4 0 chr4 2070877 2071125 -182217537 - AluSx SINE Alu -63 249 1 2317 112 3 0 chr4 2071469 2071774 -182216888 + AluSx SINE Alu 1 306 -6 2345 112 3 10 chr4 2072113 2072427 -182216235 + AluSx SINE Alu 1 312 0 2146 116 0 0 chr4 2072431 2072715 -182215947 + AluY SINE Alu 23 306 -5 1964 154 6 40 chr4 2072895 2073219 -182215443 + 7SLRNA srpRNA srpRNA 2 314 -6 925 257 63 86 chr4 2073232 2073828 -182214834 + L1ME3A LINE L1 991 1566 -4830 2043 123 44 0 chr4 2073828 2074121 -182214541 + AluSx SINE Alu 1 306 -6 925 257 63 86 chr4 2074121 2074314 -182214348 + L1ME3A LINE L1 1566 1762 -4634 1877 137 28 11 chr4 2074325 2074609 -182214053 + AluJo SINE Alu 1 289 -23 1277 279 52 67 chr4 2074734 2075530 -182213132 + L1ME3A LINE L1 1945 2751 -3464 1890 109 81 21 chr4 2075530 2075813 -182212849 - AluSx SINE Alu -8 304 5 1277 279 52 67 chr4 2075813 2075843 -182212819 + L1ME3A LINE L1 2751 2780 -3435 1710 204 10 0 chr4 2075843 2076152 -182212510 + AluJo SINE Alu 1 312 0 1277 279 52 67 chr4 2076152 2076335 -182212327 + L1ME3A LINE L1 2780 2964 -3251 2163 139 0 3 chr4 2076335 2076638 -182212024 - AluSx SINE Alu -10 302 1 2663 49 3 0 chr4 2076646 2076954 -182211708 - AluY SINE Alu -2 309 1 1277 279 52 67 chr4 2076954 2077009 -182211653 + L1ME3A LINE L1 2971 2983 -3232 607 180 62 23 chr4 2077009 2077137 -182211525 - FLAM_C SINE Alu 0 133 1 1277 279 52 67 chr4 2077137 2077186 -182211476 + L1ME3A LINE L1 2983 3031 -3184 659 118 0 0 chr4 2077192 2077285 -182211377 + AluJ/FLAM SINE Alu 2 94 -218 438 173 0 37 chr4 2077287 2077368 -182211294 - AluSc SINE Alu -110 199 122 1129 192 0 0 chr4 2077444 2077626 -182211036 + AluJo SINE Alu 121 302 -10 2736 249 32 78 chr4 2077627 2077861 -182210801 + L1ME3A LINE L1 3040 3283 -2932 2191 128 0 7 chr4 2077861 2078157 -182210505 - AluSg SINE Alu -16 294 1 2736 249 32 78 chr4 2078157 2078582 -182210080 + L1ME3A LINE L1 3283 3726 -2489 1832 189 3 0 chr4 2078582 2078879 -182209783 - AluJb SINE Alu -14 298 1 2736 249 32 78 chr4 2078879 2079064 -182209598 + L1ME3A LINE L1 3726 3918 -2297 1847 190 0 0 chr4 2079064 2079364 -182209298 + AluJb SINE Alu 3 302 -10 2736 249 32 78 chr4 2079364 2079986 -182208676 + L1ME3A LINE L1 3918 4441 -1774 1354 185 188 28 chr4 2079989 2080383 -182208279 - MSTB2 LTR MaLR 0 457 1 395 345 55 0 chr4 2080383 2080603 -182208059 + L1ME3A LINE L1 4446 4677 -1538 241 244 0 0 chr4 2080615 2080660 -182208002 + polypyrimidine Low_complexity Low_complexity 1 45 0 913 112 22 11 chr4 2080660 2080838 -182207824 + CT-rich Low_complexity Low_complexity 1 180 0 231 167 0 0 chr4 2080863 2080905 -182207757 + CT-rich Low_complexity Low_complexity 1 42 0 343 206 0 0 chr4 2080905 2080973 -182207689 + L1ME3A LINE L1 4684 4751 -1464 356 252 135 0 chr4 2080987 2081098 -182207564 - L1ME LINE L1 -400 5770 5645 804 219 0 0 chr4 2081119 2081265 -182207397 + FRAM SINE Alu 1 146 -30 198 0 0 0 chr4 2081267 2081289 -182207373 + (GAA)n Simple_repeat Simple_repeat 3 24 0 1256 248 77 46 chr4 2081305 2081612 -182207050 + L1ME3A LINE L1 4810 5106 -1129 1525 159 37 40 chr4 2081612 2081908 -182206754 + AluJo SINE Alu 3 297 -15 1256 248 77 46 chr4 2081908 2082353 -182206309 + L1ME3A LINE L1 5106 5584 -651 308 351 161 0 chr4 2082414 2082625 -182206037 + L1ME3A LINE L1 5689 5933 -306 524 151 35 126 chr4 2082630 2082829 -182205833 + MER53 DNA DNA 3 183 -6 239 281 0 0 chr4 2082988 2083045 -182205617 + L1ME3A LINE L1 6114 6170 -69 399 296 54 96 chr4 2083221 2083501 -182205161 + L2 LINE L2 3005 3272 0 304 215 43 32 chr4 2086306 2086399 -182202263 - L1MB7 LINE L1 -183 6001 5908 1084 291 59 0 chr4 2086532 2086938 -182201724 - L1MB7 LINE L1 -278 5906 5477 209 276 67 75 chr4 2088136 2088270 -182200392 - L2 LINE L2 -2 3270 3138 244 228 0 0 chr4 2089244 2089301 -182199361 - L1ME4a LINE L1 -4 6117 6061 1681 181 7 16 chr4 2089308 2089618 -182199044 + AluJo SINE Alu 3 309 -3 301 275 142 0 chr4 2089650 2089770 -182198892 - L1M4 LINE L1 -2929 3217 3081 330 183 11 21 chr4 2089778 2089871 -182198791 + C-rich Low_complexity Low_complexity 2 93 0 697 243 98 6 chr4 2089871 2090044 -182198618 - AluJo SINE Alu -4 308 120 308 298 21 0 chr4 2090044 2090138 -182198524 - L1ME LINE L1 -465 5656 5561 255 319 148 0 chr4 2093728 2093863 -182194799 - L2 LINE L2 -240 3073 2919 2122 113 3 29 chr4 2094036 2094346 -182194316 + AluSq SINE Alu 2 303 -10 675 174 58 0 chr4 2094389 2094527 -182194135 - L1ME LINE L1 -629 5537 5392 822 126 15 37 chr4 2094530 2094665 -182193997 - FLAM_A SINE Alu -1 141 10 5368 235 53 35 chr4 2094676 2095734 -182192928 - L1ME LINE L1 -751 5395 4285 2502 57 0 0 chr4 2095734 2096034 -182192628 - AluY SINE Alu -11 300 1 5368 235 53 35 chr4 2096034 2096861 -182191801 - L1ME LINE L1 -1861 4285 3475 188 298 0 0 chr4 2098240 2098287 -182190375 + L3b LINE CR1 1300 1346 -237 247 167 0 121 chr4 2099749 2099815 -182188847 + MIR SINE MIR 79 136 -126 346 178 78 9 chr4 2099815 2099914 -182188748 + AluJ/FLAM SINE Alu 1 77 -225 1686 186 13 0 chr4 2100197 2100504 -182188158 - AluSx SINE Alu -1 311 1 1632 174 54 14 chr4 2100516 2100810 -182187852 - AluJo SINE Alu -6 306 1 288 218 0 0 chr4 2100815 2100870 -182187792 - MIR SINE MIR -116 146 92 182 170 0 64 chr4 2101322 2101369 -182187293 + L2 LINE L2 3009 3052 -220 753 252 204 21 chr4 2102273 2102652 -182186010 - MLT1D LTR MaLR -7 488 52 394 231 29 0 chr4 2102915 2103019 -182185643 - MLT1E3 LTR MaLR -76 548 442 2416 197 15 15 chr4 2104121 2104587 -182184075 - MLT1C LTR MaLR -1 466 1 637 200 8 8 chr4 2105129 2105249 -182183413 + AluJb SINE Alu 146 265 -47 1012 163 4 6 chr4 2105897 2106404 -182182258 + (TGGA)n Simple_repeat Simple_repeat 1 506 0 773 148 8 0 chr4 2106567 2106689 -182181973 - FLAM_A SINE Alu 0 142 20 2053 175 47 11 chr4 2107785 2108167 -182180495 + MSTD LTR MaLR 1 396 0 1857 142 6 25 chr4 2108964 2109282 -182179380 - AluJo SINE Alu 0 312 1 302 328 61 23 chr4 2109301 2109432 -182179230 - L1ME LINE L1 -264 5857 5722 3494 203 32 69 chr4 2109479 2109711 -182178951 - L1MB7 LINE L1 -54 6130 5891 2365 57 10 7 chr4 2109711 2110008 -182178654 - AluY SINE Alu -13 298 1 3494 203 32 69 chr4 2110008 2110058 -182178604 - L1MB7 LINE L1 -293 5891 5841 1965 106 7 0 chr4 2110058 2110333 -182178329 - AluSx SINE Alu -12 300 24 3494 203 32 69 chr4 2110333 2111020 -182177642 - L1MB7 LINE L1 -343 5841 5130 1584 133 0 4 chr4 2111020 2111253 -182177409 + AluJb SINE Alu 3 234 -78 3494 203 32 69 chr4 2111253 2111991 -182176671 - L1MB7 LINE L1 -1054 5130 4316 2264 91 3 3 chr4 2111998 2112307 -182176355 - AluSx SINE Alu -2 310 2 363 222 0 0 chr4 2112311 2112392 -182176270 - L1MB7 LINE L1 0 6184 6104 1961 229 50 12 chr4 2112514 2113029 -182175633 - L1MB3 LINE L1 -2 6181 5647 271 266 112 21 chr4 2113046 2113189 -182175473 + HAL1 LINE L1 538 693 -1814 284 222 25 25 chr4 2113760 2113841 -182174821 - L1MB3 LINE L1 -572 5590 5510 335 361 100 11 chr4 2113850 2114030 -182174632 + HAL1 LINE L1 822 1017 -1490 291 206 28 19 chr4 2114043 2114150 -182174512 + HAL1 LINE L1 1069 1176 -1331 637 275 117 43 chr4 2114493 2114908 -182173754 - MLT1D LTR MaLR 0 467 22 189 264 0 0 chr4 2116915 2116987 -182171675 + (CA)n Simple_repeat Simple_repeat 1 72 0 296 276 13 0 chr4 2120861 2120937 -182167725 + MER81 DNA DNA 2 78 -36 205 290 116 0 chr4 2121210 2121279 -182167383 - MIR SINE MIR -79 183 107 196 343 42 21 chr4 2123105 2123248 -182165414 - L3 LINE CR1 -96 1481 1336 * 291 269 47 32 chr4 2123241 2123402 -182165260 - MIR SINE MIR -12 250 89 2162 60 53 3 chr4 2126076 2126361 -182162301 + AluSc SINE Alu 1 299 -10 28 29 0 0 chr4 2126870 2126905 -182161757 + GC_rich Low_complexity Low_complexity 1 35 0 201 238 16 16 chr4 2127242 2127305 -182161357 + (CCCGG)n Simple_repeat Simple_repeat 3 65 0 48 72 0 0 chr4 2127425 2127522 -182161140 + GC_rich Low_complexity Low_complexity 1 97 0 34 42 0 0 chr4 2127610 2127658 -182161004 + GC_rich Low_complexity Low_complexity 1 48 0 204 184 41 0 chr4 2127787 2127836 -182160826 + C-rich Low_complexity Low_complexity 4 54 0 40 87 0 0 chr4 2127861 2127964 -182160698 + GC_rich Low_complexity Low_complexity 1 103 0 24 67 0 0 chr4 2128030 2128075 -182160587 + GC_rich Low_complexity Low_complexity 1 45 0 334 311 67 8 chr4 2129089 2129208 -182159454 - MIR SINE MIR -43 219 94 228 189 167 33 chr4 2131688 2131778 -182156884 - L2 LINE L2 -38 3234 3133 182 40 0 0 chr4 2132619 2132644 -182156018 - L2 LINE L2 -219 3053 3029 344 330 60 47 chr4 2134795 2134968 -182153694 - L1 LINE L1 -802 5344 5172 350 289 102 62 chr4 2134968 2135224 -182153438 - L1ME4a LINE L1 -1 6120 5127 318 244 51 0 chr4 2135228 2135306 -182153356 + L1ME4a LINE L1 5983 6064 -57 209 262 0 0 chr4 2139385 2139427 -182149235 + (TCCG)n Simple_repeat Simple_repeat 2 43 0 228 292 0 0 chr4 2139611 2139676 -182148986 + (CA)n Simple_repeat Simple_repeat 1 65 0 770 74 11 63 chr4 2145420 2145609 -182143053 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 257 269 164 10 chr4 2146196 2146300 -182142362 + LTR37B LTR ERV1 197 316 -152 2455 55 0 29 chr4 2146415 2146725 -182141937 - AluSg SINE Alu -9 301 1 287 204 0 84 chr4 2147067 2147209 -182141453 + (CCCCG)n Simple_repeat Simple_repeat 4 133 0 214 218 18 0 chr4 2151021 2151076 -182137586 + T-rich Low_complexity Low_complexity 5 60 0 368 253 91 0 chr4 2151529 2151628 -182137034 + MER91C DNA MER1_type 33 140 0 194 272 102 37 chr4 2151765 2151957 -182136705 - MIR SINE MIR -44 218 16 330 174 11 33 chr4 2151965 2152057 -182136605 + CT-rich Low_complexity Low_complexity 1 90 0 1526 186 47 18 chr4 2152057 2152332 -182136330 - AluJo SINE Alu -17 295 13 267 54 0 0 chr4 2152604 2152641 -182136021 + (TTA)n Simple_repeat Simple_repeat 2 38 0 2047 105 7 18 chr4 2152643 2152928 -182135734 - AluSx SINE Alu -30 282 1 412 219 36 82 chr4 2153849 2154068 -182134594 - L1ME1 LINE L1 -262 5904 5696 564 116 67 37 chr4 2154071 2154191 -182134471 - L1M3 LINE L1 -626 5554 5429 590 252 32 142 chr4 2154211 2154321 -182134341 - L1M4 LINE L1 -3549 2597 2477 2318 95 0 0 chr4 2154321 2154615 -182134047 + AluSg SINE Alu 1 294 -16 590 252 32 142 chr4 2154615 2154904 -182133758 - L1M4 LINE L1 -3669 2477 2238 545 308 88 65 chr4 2155296 2155650 -182133012 - L1ME4a LINE L1 -239 5882 5521 1065 217 99 15 chr4 2155655 2155987 -182132675 - HsTC2 DNA Tc2 -22 1876 1517 417 221 19 10 chr4 2155989 2156093 -182132569 - HsTC2 DNA Tc2 -1793 105 1 398 276 79 26 chr4 2156426 2156578 -182132084 - MER5A DNA MER1_type -1 188 29 286 232 274 0 chr4 2156984 2157079 -182131583 + L2 LINE L2 3193 3313 0 25 0 0 0 chr4 2157269 2157294 -182131368 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 2157312 2157334 -182131328 + AT_rich Low_complexity Low_complexity 1 22 0 2188 104 3 3 chr4 2157898 2158186 -182130476 - AluSc SINE Alu -21 288 1 2111 131 0 0 chr4 2159205 2159488 -182129174 - AluSx SINE Alu -25 287 5 2183 92 14 7 chr4 2159647 2159962 -182128700 - AluSq SINE Alu 0 317 1 2244 73 49 0 chr4 2160869 2161156 -182127506 + AluY SINE Alu 1 301 -10 180 143 0 0 chr4 2161218 2161260 -182127402 + (T)n Simple_repeat Simple_repeat 1 42 0 515 135 0 0 chr4 2161792 2161866 -182126796 + FLAM_A SINE Alu 53 126 -16 1282 234 87 9 chr4 2161988 2162322 -182126340 - MLT1E LTR MaLR -8 585 226 566 263 44 12 chr4 2162348 2162508 -182126154 - MLT1E LTR MaLR -428 165 1 423 302 124 28 chr4 2163167 2163501 -182125161 + MLT1J LTR MaLR 38 440 -71 1814 150 46 4 chr4 2163503 2163783 -182124879 - AluJo SINE Alu -17 295 4 21 36 0 0 chr4 2163793 2163821 -182124841 + AT_rich Low_complexity Low_complexity 1 28 0 1999 121 4 0 chr4 2163924 2164196 -182124466 - AluSx SINE Alu -3 309 37 201 133 0 0 chr4 2164218 2164248 -182124414 + (CATA)n Simple_repeat Simple_repeat 3 32 0 22 70 0 0 chr4 2164343 2164386 -182124276 + AT_rich Low_complexity Low_complexity 1 43 0 5770 120 36 106 chr4 2164394 2164540 -182124122 + Tigger3b DNA MER2_type 2 157 -2871 2285 104 3 3 chr4 2164540 2164837 -182123825 - AluSq SINE Alu -16 297 1 5770 120 36 106 chr4 2164837 2165926 -182122736 + Tigger3b DNA MER2_type 157 1145 -1883 2139 156 3 9 chr4 2165926 2166265 -182122397 - MER1B DNA MER1_type 0 337 1 5770 120 36 106 chr4 2166265 2166327 -182122335 + Tigger3b DNA MER2_type 1145 1210 -21 956 253 122 22 chr4 2166518 2166878 -182121784 + HERV16 LTR ERVL 1 396 -4600 845 171 204 52 chr4 2166963 2167232 -182121430 - AluJb SINE Alu -2 310 1 2205 90 67 41 chr4 2167392 2167631 -182121031 - MER4A LTR ERV1 0 664 410 2015 146 7 0 chr4 2167631 2167926 -182120736 + AluSx SINE Alu 1 297 -15 2205 90 67 41 chr4 2167926 2168074 -182120588 - MER4A LTR ERV1 -254 410 267 606 110 0 20 chr4 2168087 2168187 -182120475 - MER4A LTR ERV1 -566 98 1 871 183 35 18 chr4 2168199 2168368 -182120294 + AluJb SINE Alu 129 300 -12 558 234 58 92 chr4 2168752 2169013 -182119649 - LTR41 LTR ERVL -12 761 510 389 241 37 80 chr4 2169279 2169441 -182119221 - LTR41 LTR ERVL -618 155 1 2033 234 66 12 chr4 2169441 2170032 -182118630 + HERV16 LTR ERVL 829 1451 -3545 2152 259 110 21 chr4 2170052 2170798 -182117864 + HERV16 LTR ERVL 1758 2569 -2427 582 268 100 11 chr4 2170858 2171048 -182117614 + HERV16 LTR ERVL 2721 2927 -2069 2259 85 7 43 chr4 2171051 2171356 -182117306 - AluSp SINE Alu -19 294 1 675 191 32 8 chr4 2171359 2171485 -182117177 - FLAM_A SINE Alu -1 141 13 800 323 50 12 chr4 2171657 2172057 -182116605 + HERV16 LTR ERVL 3116 3530 -2234 507 264 59 42 chr4 2172194 2172433 -182116229 + HERV16 LTR ERVL 3421 3663 -1333 959 343 109 20 chr4 2172496 2173435 -182115227 + HERV16 LTR ERVL 4082 5103 -661 491 293 105 4 chr4 2173866 2174095 -182114567 + LTR16A LTR ERVL 102 353 -97 256 315 64 34 chr4 2174224 2174491 -182114171 - L1ME LINE L1 -239 5882 5605 361 233 0 117 chr4 2174553 2174673 -182113989 + L1MC4 LINE L1 6614 6719 -1323 297 314 38 9 chr4 2174774 2174879 -182113783 - L1ME LINE L1 -2191 5617 5510 229 286 8 17 chr4 2174939 2175058 -182113604 - L1P LINE L1 -785 5361 5244 546 304 143 49 chr4 2175125 2175254 -182113408 - L1ME LINE L1 -1340 4806 4691 2267 112 0 0 chr4 2175254 2175549 -182113113 - AluSx SINE Alu -17 295 1 546 304 143 49 chr4 2175549 2175844 -182112818 - L1ME LINE L1 -1455 4691 4342 403 240 0 0 chr4 2175858 2175933 -182112729 + MIR SINE MIR 4 78 -184 301 330 28 132 chr4 2176493 2176811 -182111851 - L2 LINE L2 0 3272 2988 1875 157 0 35 chr4 2176817 2177136 -182111526 + AluJo SINE Alu 1 308 -4 316 211 18 0 chr4 2177332 2177389 -182111273 + MIR SINE MIR 8 65 -197 1248 214 93 68 chr4 2177620 2177661 -182111001 - Charlie2 DNA MER1_type 0 2862 2824 1516 162 0 113 chr4 2177661 2178007 -182110655 - AluSx SINE Alu 0 312 3 1248 214 93 68 chr4 2178007 2178202 -182110460 - Charlie2 DNA MER1_type -38 2824 2635 450 0 0 0 chr4 2178202 2178252 -182110410 + (TTA)n Simple_repeat Simple_repeat 2 51 0 2137 104 7 0 chr4 2178254 2178532 -182110130 - AluSx SINE Alu -30 282 3 378 0 0 0 chr4 2178537 2178579 -182110083 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 2113 111 14 0 chr4 2178582 2178862 -182109800 - AluSg SINE Alu -26 284 1 1862 157 7 14 chr4 2178864 2179206 -182109456 - AluJb SINE Alu 0 312 1 1248 214 93 68 chr4 2179206 2179478 -182109184 - Charlie2 DNA MER1_type -231 2631 2367 212 75 0 25 chr4 2179478 2179518 -182109144 + (TA)n Simple_repeat Simple_repeat 1 39 0 1248 214 93 68 chr4 2179518 2179541 -182109121 - Charlie2 DNA MER1_type -495 2367 2346 2052 161 0 0 chr4 2179541 2179851 -182108811 + AluJb SINE Alu 1 310 -2 1248 214 93 68 chr4 2179851 2179977 -182108685 - Charlie2 DNA MER1_type -516 2346 2169 2340 109 3 0 chr4 2180001 2180303 -182108359 - AluSg SINE Alu -7 303 1 2199 117 7 0 chr4 2180505 2180795 -182107867 - AluSq SINE Alu -21 292 1 1718 159 66 3 chr4 2181671 2182097 -182106565 - L1M4 LINE L1 -587 5597 5149 307 66 0 66 chr4 2182118 2182179 -182106483 + (TTTCC)n Simple_repeat Simple_repeat 1 57 0 14974 188 26 18 chr4 2182179 2183609 -182105053 - L1PB1 LINE L1 -85 6782 5365 2364 96 0 7 chr4 2183609 2183910 -182104752 - AluSg SINE Alu -11 299 1 14974 188 26 18 chr4 2183910 2185368 -182103294 - L1PB1 LINE L1 -1502 5365 3920 2360 93 7 3 chr4 2185368 2185678 -182102984 - AluSq SINE Alu -1 312 2 14974 188 26 18 chr4 2185678 2185911 -182102751 - L1PB1 LINE L1 -2947 3920 3690 2235 115 0 3 chr4 2185911 2186207 -182102455 - AluSc SINE Alu -14 295 1 14974 188 26 18 chr4 2186207 2186753 -182101909 - L1PB1 LINE L1 -3177 3690 3150 2270 114 0 0 chr4 2186753 2187052 -182101610 - AluSx SINE Alu 0 312 14 14974 188 26 18 chr4 2187052 2187362 -182101300 - L1PB1 LINE L1 -3717 3150 2844 194 0 39 0 chr4 2187362 2187388 -182101274 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 14974 188 26 18 chr4 2187388 2188204 -182100458 - L1PB1 LINE L1 -4023 2844 1881 2324 88 0 38 chr4 2188204 2188522 -182100140 - AluSc SINE Alu -3 306 1 14974 188 26 18 chr4 2188522 2189016 -182099646 - L1PB1 LINE L1 -4986 1881 1392 940 202 21 0 chr4 2189013 2189201 -182099461 - L1PB1 LINE L1 -6666 197 6 * 1321 170 54 35 chr4 2189218 2189535 -182099127 - L1M4 LINE L1 -1384 4762 4440 2051 126 10 10 chr4 2189631 2189932 -182098730 + AluSx SINE Alu 1 301 -11 1520 236 39 16 chr4 2190111 2190602 -182098060 - L1M4 LINE L1 -1537 4609 4108 1204 285 66 2 chr4 2191934 2192387 -182096275 + L2 LINE L2 2296 2777 -537 192 288 125 11 chr4 2192476 2192660 -182096002 + L2 LINE L2 2812 3016 -297 229 243 43 14 chr4 2192972 2193042 -182095620 - L1MC4 LINE L1 -385 7657 7586 298 267 62 27 chr4 2193068 2193214 -182095448 - L1MC5 LINE L1 -543 7418 7268 723 123 66 0 chr4 2193243 2193365 -182095297 + MER53 DNA DNA 1 130 -59 407 207 47 64 chr4 2193551 2193717 -182094945 - L1MC4 LINE L1 -740 7221 7084 1632 158 4 36 chr4 2193768 2194046 -182094616 + AluJo SINE Alu 44 312 0 248 254 56 14 chr4 2194143 2194214 -182094448 + L2 LINE L2 3232 3305 -8 225 214 0 0 chr4 2194542 2194598 -182094064 + L1MC4 LINE L1 6648 6703 -1339 905 131 0 91 chr4 2194599 2194775 -182093887 - AluJ SINE Alu -21 291 132 562 317 23 58 chr4 2195258 2195517 -182093145 + MIR SINE MIR 12 261 -1 391 257 0 26 chr4 2195964 2196077 -182092585 + MIR SINE MIR 71 180 -82 27 61 0 15 chr4 2196652 2196692 -182091970 + AT_rich Low_complexity Low_complexity 1 41 -24 851 146 0 0 chr4 2196692 2196822 -182091840 - AluJ SINE Alu -172 130 1 27 61 0 15 chr4 2196822 2196847 -182091815 + AT_rich Low_complexity Low_complexity 41 65 0 2091 116 39 0 chr4 2196870 2197155 -182091507 + AluSg SINE Alu 1 296 -14 420 137 48 186 chr4 2197335 2197373 -182091289 - L1MC5 LINE L1 -104 7857 7815 2030 97 0 8 chr4 2197373 2197641 -182091021 - AluSg SINE Alu -10 300 35 420 137 48 186 chr4 2197641 2197850 -182090812 - L1MC5 LINE L1 -146 7815 7644 5902 131 55 25 chr4 2197872 2199461 -182089201 - L1MA4 LINE L1 -7 6293 4753 2322 94 13 0 chr4 2199461 2199759 -182088903 - AluSc SINE Alu -7 302 1 5902 131 55 25 chr4 2199759 2199846 -182088816 - L1MA4 LINE L1 -1547 4753 4670 2537 72 0 0 chr4 2199846 2200150 -182088512 - AluY SINE Alu -7 304 1 5902 131 55 25 chr4 2200150 2200186 -182088476 - L1MA4 LINE L1 -1630 4670 4530 * 7064 184 58 60 chr4 2200170 2200842 -182087820 - L1 LINE L1 -3849 2479 1807 2447 63 0 7 chr4 2200842 2201189 -182087473 - AluY SINE Alu 0 311 1 7064 184 58 60 chr4 2201189 2201392 -182087270 - L1 LINE L1 -4521 1807 1605 1761 164 0 18 chr4 2201392 2201678 -182086984 - AluJo SINE Alu -30 282 2 7064 184 58 60 chr4 2201678 2201964 -182086698 - L1 LINE L1 -4723 1605 1320 2123 125 0 0 chr4 2201964 2202277 -182086385 + AluSx SINE Alu 1 313 0 7064 184 58 60 chr4 2202277 2203586 -182085076 - L1 LINE L1 -5008 1320 14 2893 207 70 60 chr4 2203600 2203735 -182084927 - L1MC5 LINE L1 -302 7659 7527 2348 104 3 3 chr4 2203735 2204044 -182084618 - AluSx SINE Alu -3 309 1 2893 207 70 60 chr4 2204044 2205012 -182083650 - L1MC5 LINE L1 -434 7527 6530 312 275 37 78 chr4 2205042 2205311 -182083351 - HAL1b LINE L1 -809 539 282 1949 112 101 0 chr4 2205352 2205628 -182083034 + AluSx SINE Alu 1 304 -8 4240 174 76 32 chr4 2205661 2206872 -182081790 - L1MB7 LINE L1 -5 6179 4886 1700 202 64 36 chr4 2206872 2207322 -182081340 - MLT1C LTR MaLR 0 467 5 4240 174 76 32 chr4 2207322 2207464 -182081198 - L1MB7 LINE L1 -1298 4886 4752 2305 75 0 69 chr4 2207491 2207809 -182080853 - AluY SINE Alu -15 296 1 180 0 0 0 chr4 2207986 2208006 -182080656 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr4 2208028 2208049 -182080613 + AT_rich Low_complexity Low_complexity 1 21 0 2307 115 0 3 chr4 2208060 2208373 -182080289 + AluSx SINE Alu 1 312 0 2151 141 0 0 chr4 2210594 2210891 -182077771 + AluSx SINE Alu 1 297 -15 311 206 62 89 chr4 2211423 2211569 -182077093 - LTR67 LTR ERVL 0 557 416 344 147 0 93 chr4 2211818 2211893 -182076769 - MIR SINE MIR -109 153 86 198 304 104 26 chr4 2212812 2212927 -182075735 + MIR SINE MIR 28 151 -111 304 307 70 42 chr4 2213885 2214126 -182074536 + L1M4 LINE L1 4456 4703 -1443 2137 130 0 3 chr4 2214382 2214681 -182073981 + AluSx SINE Alu 1 298 -14 678 178 17 35 chr4 2215934 2216108 -182072554 + L1MA4A LINE L1 5950 6120 -183 430 224 20 0 chr4 2216109 2216207 -182072455 + L1MA4A LINE L1 6183 6282 -21 412 317 135 13 chr4 2216415 2216907 -182071755 - L1ME3A LINE L1 -206 5964 5402 207 0 0 0 chr4 2217245 2217268 -182071394 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 263 237 172 12 chr4 2217332 2217501 -182071161 - L1ME LINE L1 -715 5449 5254 856 137 14 0 chr4 2217684 2217823 -182070839 - FLAM_C SINE Alu -2 141 1 1630 181 7 24 chr4 2217905 2218198 -182070464 - AluJo SINE Alu -20 292 5 367 277 0 0 chr4 2219758 2219852 -182068810 + MIR SINE MIR 100 193 -69 193 292 171 30 chr4 2220066 2220330 -182068332 + L2 LINE L2 2615 2915 -399 290 204 78 10 chr4 2221210 2221313 -182067349 + L2 LINE L2 3183 3292 -21 253 212 68 104 chr4 2221324 2221484 -182067178 - L1M4 LINE L1 -3173 2973 2822 2013 122 14 0 chr4 2221484 2221770 -182066892 - AluSq SINE Alu -23 290 1 253 212 68 104 chr4 2221770 2221831 -182066831 - L1M4 LINE L1 -3324 2822 2760 2384 189 63 55 chr4 2222389 2222930 -182065732 - MLT2B3 LTR ERVL -9 545 1 289 348 119 28 chr4 2223115 2223270 -182065392 - L2 LINE L2 -431 2883 2743 4972 131 17 71 chr4 2223270 2223291 -182065371 - L1MC1 LINE L1 0 6333 6312 1717 176 14 0 chr4 2223291 2223580 -182065082 + AluJo SINE Alu 1 293 -19 4972 131 17 71 chr4 2223580 2224490 -182064172 - L1MC1 LINE L1 -21 6312 5452 289 348 119 28 chr4 2224490 2224525 -182064137 - L2 LINE L2 -571 2743 2713 2359 113 3 0 chr4 2224525 2224836 -182063826 - AluSx SINE Alu 0 312 1 2227 110 7 0 chr4 2224836 2225136 -182063526 - AluSp SINE Alu -11 302 1 289 348 119 28 chr4 2225136 2225549 -182063113 - L2 LINE L2 -600 2714 2223 234 305 46 8 chr4 2225593 2225724 -182062938 + MER5B DNA MER1_type 41 176 -2 431 281 7 122 chr4 2226231 2226534 -182062128 + L1ME3A LINE L1 4563 4830 -1316 1566 123 18 0 chr4 2226574 2226801 -182061861 + AluJb SINE Alu 1 231 -81 4071 120 106 103 chr4 2226801 2228211 -182060451 - pTR5 LTR ERV1 0 2438 375 285 151 94 0 chr4 2228211 2228264 -182060398 + AluJb SINE Alu 238 295 -7 1163 287 74 42 chr4 2228346 2228598 -182060064 + L1ME3A LINE L1 4957 5200 -962 1734 157 7 11 chr4 2228598 2228878 -182059784 + AluJo SINE Alu 12 290 -22 1163 287 74 42 chr4 2228878 2229498 -182059164 + L1ME3A LINE L1 5200 5864 -298 421 239 158 34 chr4 2229509 2229718 -182058944 + L1ME3A LINE L1 5933 6167 -3 272 220 55 11 chr4 2230778 2230869 -182057793 + L1MC3 LINE L1 7684 7778 -7 246 152 167 30 chr4 2230869 2230935 -182057727 + MER113 DNA MER1_type? 401 475 -46 2133 113 0 14 chr4 2231028 2231320 -182057342 + AluSx SINE Alu 1 288 -24 2234 102 10 3 chr4 2231526 2231831 -182056831 - AluSg SINE Alu -3 307 1 238 161 74 74 chr4 2232005 2232086 -182056576 - MIR SINE MIR -119 143 63 2095 81 25 0 chr4 2233128 2233412 -182055250 + AluY SINE Alu 1 291 -20 25 31 0 0 chr4 2233508 2233540 -182055122 + AT_rich Low_complexity Low_complexity 1 32 0 246 125 333 0 chr4 2234397 2234469 -182054193 - L1MC/D LINE L1 -1989 5819 5724 315 269 221 18 chr4 2234574 2234909 -182053753 - L1MC/D LINE L1 -452 5669 5267 216 0 0 0 chr4 2235010 2235034 -182053628 + (T)n Simple_repeat Simple_repeat 1 24 0 2276 110 3 0 chr4 2235140 2235441 -182053221 + AluSp SINE Alu 1 302 -11 2438 109 0 0 chr4 2235441 2235753 -182052909 + AluSx SINE Alu 1 312 0 325 279 68 37 chr4 2235758 2235784 -182052878 + L2 LINE L2 2688 2712 -602 5075 131 14 74 chr4 2235784 2236700 -182051962 + L1MC1 LINE L1 5452 6312 -21 1888 171 0 0 chr4 2236700 2236993 -182051669 - AluJo SINE Alu -19 293 1 5075 131 14 74 chr4 2236993 2237014 -182051648 + L1MC1 LINE L1 6312 6333 0 325 279 68 37 chr4 2237014 2237177 -182051485 + L2 LINE L2 2712 2883 -431 2642 188 47 55 chr4 2237362 2237911 -182050751 + MLT2B3 LTR ERVL 1 545 -9 425 207 38 110 chr4 2238470 2238533 -182050129 + L1M4 LINE L1 2760 2826 -3320 2187 124 0 0 chr4 2238533 2238824 -182049838 + AluSq SINE Alu 1 291 -22 425 207 38 110 chr4 2238824 2238997 -182049665 + L1M4 LINE L1 2826 2979 -3167 317 217 66 9 chr4 2239003 2239109 -182049553 - L2 LINE L2 -19 3294 3183 219 294 166 30 chr4 2240024 2240289 -182048373 - L2 LINE L2 -399 2915 2615 367 277 0 0 chr4 2240503 2240597 -182048065 - MIR SINE MIR -69 193 100 1630 181 7 24 chr4 2242191 2242484 -182046178 + AluJo SINE Alu 5 292 -20 938 141 0 0 chr4 2242573 2242715 -182045947 + FLAM_C SINE Alu 1 142 -1 321 250 151 12 chr4 2242899 2243071 -182045591 + L1ME LINE L1 5254 5449 -713 207 0 0 0 chr4 2243139 2243162 -182045500 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 450 325 95 11 chr4 2243501 2243885 -182044777 + L1ME LINE L1 5402 5816 -354 430 232 10 0 chr4 2244209 2244308 -182044354 - L1MA4A LINE L1 -21 6282 6183 660 188 11 40 chr4 2244309 2244485 -182044177 - L1MA4A LINE L1 -183 6120 5950 2137 130 0 3 chr4 2245738 2246037 -182042625 - AluSx SINE Alu -14 298 1 304 307 70 42 chr4 2246293 2246534 -182042128 - L1M4 LINE L1 -1443 4703 4456 198 304 104 26 chr4 2247492 2247607 -182041055 - MIR SINE MIR -111 151 28 344 147 0 93 chr4 2248526 2248601 -182040061 + MIR SINE MIR 86 153 -109 311 206 62 89 chr4 2248850 2248996 -182039666 + LTR67 LTR ERVL 416 557 0 2151 141 0 0 chr4 2249528 2249825 -182038837 - AluSx SINE Alu -15 297 1 2307 115 0 3 chr4 2252046 2252359 -182036303 - AluSx SINE Alu 0 312 1 21 0 0 0 chr4 2252370 2252391 -182036271 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr4 2252413 2252433 -182036229 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 2305 75 0 69 chr4 2252610 2252928 -182035734 + AluY SINE Alu 1 296 -15 4240 174 76 32 chr4 2252955 2253097 -182035565 + L1MB7 LINE L1 4752 4886 -1298 1700 202 64 36 chr4 2253097 2253547 -182035115 + MLT1C LTR MaLR 5 467 0 4240 174 76 32 chr4 2253547 2254758 -182033904 + L1MB7 LINE L1 4886 6179 -5 1949 112 101 0 chr4 2254791 2255067 -182033595 - AluSx SINE Alu -8 304 1 350 279 51 35 chr4 2255182 2255379 -182033283 + HAL1b LINE L1 340 539 -809 2893 207 70 60 chr4 2255409 2256377 -182032285 + L1MC5 LINE L1 6530 7527 -434 2348 104 3 3 chr4 2256377 2256686 -182031976 + AluSx SINE Alu 1 309 -3 2893 207 70 60 chr4 2256686 2256821 -182031841 + L1MC5 LINE L1 7527 7659 -302 7064 176 54 49 chr4 2256835 2258144 -182030518 + L1MA4 LINE L1 14 1314 -5014 2122 125 0 0 chr4 2258144 2258457 -182030205 - AluSx SINE Alu 0 313 1 7064 176 54 49 chr4 2258457 2258743 -182029919 + L1MA4 LINE L1 1314 1597 -4731 1761 164 0 18 chr4 2258743 2259029 -182029633 + AluJo SINE Alu 2 282 -30 7064 176 54 49 chr4 2259029 2259232 -182029430 + L1MA4 LINE L1 1597 1797 -4531 2447 63 0 7 chr4 2259232 2259579 -182029083 + AluY SINE Alu 1 311 0 7064 176 54 49 chr4 2259579 2260251 -182028411 + L1MA4 LINE L1 1797 2479 -3849 5902 131 55 25 chr4 2260235 2260271 -182028391 + L1MA4 LINE L1 4712 4745 -1737 * 2549 69 0 0 chr4 2260271 2260575 -182028087 + AluY SINE Alu 1 304 -7 5902 131 55 25 chr4 2260575 2260662 -182028000 + L1MA4 LINE L1 4745 4828 -1654 2322 94 13 0 chr4 2260662 2260960 -182027702 + AluSc SINE Alu 1 302 -7 5902 131 55 25 chr4 2260960 2262549 -182026113 + L1MA4 LINE L1 4828 6475 -7 418 138 49 183 chr4 2262572 2262780 -182025882 + L1MC5 LINE L1 7645 7817 -144 2050 93 0 7 chr4 2262780 2263049 -182025613 + AluSg SINE Alu 35 301 -9 418 138 49 183 chr4 2263049 2263086 -182025576 + L1MC5 LINE L1 7817 7857 -104 2116 102 39 0 chr4 2263266 2263551 -182025111 - AluSg SINE Alu -14 296 1 27 61 0 15 chr4 2263574 2263599 -182025063 + AT_rich Low_complexity Low_complexity 1 25 -40 851 146 0 0 chr4 2263599 2263729 -182024933 + AluJ SINE Alu 1 130 -172 27 61 0 15 chr4 2263729 2263769 -182024893 + AT_rich Low_complexity Low_complexity 25 65 0 391 257 0 26 chr4 2264344 2264457 -182024205 - MIR SINE MIR -82 180 71 562 317 23 58 chr4 2264904 2265163 -182023499 - MIR SINE MIR -1 261 12 905 131 0 91 chr4 2265646 2265822 -182022840 + AluJ SINE Alu 132 291 -21 225 214 0 0 chr4 2265823 2265879 -182022783 - L1MC4 LINE L1 -1339 6703 6648 248 254 56 14 chr4 2266207 2266278 -182022384 - L2 LINE L2 -8 3305 3232 1632 158 4 36 chr4 2266375 2266653 -182022009 - AluJo SINE Alu 0 312 44 407 207 47 64 chr4 2266704 2266870 -182021792 + L1MC4 LINE L1 7084 7247 -740 723 123 66 0 chr4 2267056 2267178 -182021484 - MER53 DNA DNA -59 130 1 298 267 62 27 chr4 2267207 2267353 -182021309 + L1MC5 LINE L1 7268 7418 -543 229 243 43 14 chr4 2267379 2267449 -182021213 + L1MC4 LINE L1 7586 7657 -385 192 288 125 11 chr4 2267761 2267945 -182020717 - L2 LINE L2 -297 3016 2812 257 91 0 0 chr4 2267992 2268025 -182020637 - U2 snRNA snRNA -152 36 4 1204 285 66 2 chr4 2268034 2268487 -182020175 - L2 LINE L2 -537 2777 2296 1520 236 39 16 chr4 2269819 2270310 -182018352 + L1ME1 LINE L1 4108 4609 -1537 322 272 33 99 chr4 2270318 2270489 -182018173 + L1MDa LINE L1 1492 1676 -4750 2051 126 10 10 chr4 2270489 2270790 -182017872 - AluSx SINE Alu -11 301 1 322 272 33 99 chr4 2270790 2270926 -182017736 + L1MDa LINE L1 1676 1819 -4607 330 374 31 28 chr4 2271061 2271417 -182017245 + L2 LINE L2 2223 2579 -735 337 201 6 28 chr4 2271481 2271569 -182017093 + AluJ/monomer SINE Alu 1 45 -255 2331 206 44 125 chr4 2271822 2272057 -182016605 + L1ME1 LINE L1 5372 5624 -542 433 133 13 0 chr4 2272057 2272128 -182016534 + L1MB2 LINE L1 6096 6171 0 2331 206 44 125 chr4 2272128 2272224 -182016438 + L1ME1 LINE L1 5624 5726 -440 1479 174 0 50 chr4 2272224 2272522 -182016140 + AluJo SINE Alu 1 283 -29 315 0 0 0 chr4 2272523 2272558 -182016104 + (CAAAC)n Simple_repeat Simple_repeat 2 36 0 1781 167 3 30 chr4 2272560 2272697 -182015965 + AluSx SINE Alu 1 140 -172 2295 113 6 3 chr4 2272697 2273008 -182015654 + AluSx SINE Alu 1 312 0 1781 167 3 30 chr4 2273008 2273169 -182015493 + AluSx SINE Alu 140 291 -21 2331 206 44 125 chr4 2273169 2273635 -182015027 + L1ME1 LINE L1 5727 6104 -62 1549 147 33 50 chr4 2273635 2273934 -182014728 - AluJo SINE Alu -18 294 1 2331 206 44 125 chr4 2273934 2273985 -182014677 + L1ME1 LINE L1 6104 6158 -8 378 204 58 0 chr4 2274507 2274610 -182014052 - MER91C DNA MER1_type -1 139 31 301 135 0 104 chr4 2275907 2276003 -182012659 + (GGAGA)n Simple_repeat Simple_repeat 2 87 0 2229 114 3 7 chr4 2278128 2278434 -182010228 + AluSx SINE Alu 1 305 -7 28 22 0 22 chr4 2278733 2278755 -182009907 + AT_rich Low_complexity Low_complexity 1 22 -23 1879 163 0 7 chr4 2278755 2279044 -182009618 - AluJo SINE Alu -25 287 1 28 22 0 22 chr4 2279044 2279067 -182009595 + AT_rich Low_complexity Low_complexity 22 45 0 1977 119 32 3 chr4 2279326 2279611 -182009051 + AluSx SINE Alu 1 293 -19 456 104 0 0 chr4 2279616 2279683 -182008979 + (GGGGA)n Simple_repeat Simple_repeat 4 70 0 1830 159 0 28 chr4 2280253 2280543 -182008119 + AluJb SINE Alu 5 286 -26 1887 266 68 27 chr4 2281541 2282294 -182006368 + L1ME LINE L1 874 1644 -4436 633 149 57 71 chr4 2282379 2282520 -182006142 + FLAM_C SINE Alu 2 140 -3 2663 144 7 2 chr4 2282520 2282944 -182005718 + L1MA5 LINE L1 5490 5915 -385 * 5026 168 33 47 chr4 2282940 2283953 -182004709 - L1MC3 LINE L1 -1362 6423 5426 238 297 102 0 chr4 2286381 2286499 -182002163 + L2 LINE L2 3141 3270 -2 457 279 52 14 chr4 2286512 2286654 -182002008 - MIR SINE MIR -64 144 40 2008 119 0 0 chr4 2287216 2287493 -182001169 - AluSg SINE Alu -33 277 1 250 143 71 0 chr4 2287535 2287577 -182001085 + L2 LINE L2 3226 3270 -2 1802 128 33 4 chr4 2287975 2288278 -182000384 + AluSx SINE Alu 1 311 0 311 230 81 0 chr4 2288761 2288835 -181999827 - MER112 DNA MER1_type -58 202 123 1937 114 4 4 chr4 2289422 2289732 -181998930 - AluSg SINE Alu 0 310 1 1888 161 0 3 chr4 2289820 2290118 -181998544 + AluSx SINE Alu 1 297 -15 302 318 15 19 chr4 2290417 2290587 -181998075 + MLT1K LTR MaLR 429 572 -16 1531 164 135 50 chr4 2291789 2292018 -181996644 + L1ME3A LINE L1 15 290 -6250 217 47 47 23 chr4 2292018 2292061 -181996601 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1531 164 135 50 chr4 2292061 2292208 -181996454 + L1ME3A LINE L1 290 423 -6117 542 210 142 6 chr4 2292228 2292392 -181996270 + MER31B LTR ERV1 273 510 -4 2149 256 90 4 chr4 2292396 2293161 -181995501 + L1ME3A LINE L1 3342 4172 -2368 693 176 29 0 chr4 2293164 2293300 -181995362 + L1MC/D LINE L1 5616 5755 -487 24 53 0 0 chr4 2293374 2293412 -181995250 + AT_rich Low_complexity Low_complexity 1 38 0 2182 118 0 0 chr4 2293487 2293793 -181994869 - AluSg SINE Alu -4 306 1 27 0 0 0 chr4 2293914 2293941 -181994721 + AT_rich Low_complexity Low_complexity 1 27 0 204 341 12 0 chr4 2294088 2294170 -181994492 - L2 LINE L2 0 3272 3190 1004 273 98 55 chr4 2294290 2295400 -181993262 + L1ME3A LINE L1 5176 6341 -223 33 25 0 0 chr4 2295424 2295464 -181993198 + AT_rich Low_complexity Low_complexity 1 40 0 2104 95 14 3 chr4 2295575 2295871 -181992791 + AluSq SINE Alu 1 299 -14 2312 98 0 0 chr4 2296983 2297288 -181991374 - AluSp SINE Alu -8 305 1 430 336 38 0 chr4 2297294 2297425 -181991237 - L2 LINE L2 -5 3267 3132 973 232 92 129 chr4 2297530 2297732 -181990930 + L1ME1 LINE L1 1112 1320 -5076 2141 88 3 20 chr4 2297732 2298027 -181990635 + AluSg SINE Alu 1 290 -20 973 232 92 129 chr4 2298027 2298378 -181990284 + L1ME1 LINE L1 1320 1632 -4764 1734 142 0 21 chr4 2298378 2298691 -181989971 + AluJb SINE Alu 24 312 0 973 232 92 129 chr4 2298691 2298890 -181989772 + L1ME1 LINE L1 1632 1837 -4559 287 119 24 0 chr4 2298895 2298937 -181989725 - FLAM_A SINE Alu -32 101 59 1017 194 5 23 chr4 2298942 2299141 -181989521 + AluJo SINE Alu 99 295 -17 2280 90 0 3 chr4 2299141 2299452 -181989210 + AluSg SINE Alu 1 310 0 1017 194 5 23 chr4 2299452 2299469 -181989193 + AluJo SINE Alu 295 311 -1 333 162 133 48 chr4 2299479 2299584 -181989078 + L1ME1 LINE L1 2304 2417 -3798 291 276 0 0 chr4 2299651 2299738 -181988924 + L1ME1 LINE L1 2403 2489 -3726 * 2793 249 34 33 chr4 2299725 2301208 -181987454 + L1ME1 LINE L1 4617 6100 -135 1746 177 3 19 chr4 2301360 2301677 -181986985 - AluSx SINE Alu 0 312 1 1088 132 93 39 chr4 2301680 2301884 -181986778 - AluJo SINE Alu -11 301 87 284 302 52 85 chr4 2302181 2302429 -181986233 + L1MC/D LINE L1 5507 5746 -2062 301 291 27 14 chr4 2302773 2302921 -181985741 + HAL1b LINE L1 1191 1340 -8 2129 92 3 7 chr4 2302927 2303222 -181985440 - AluY SINE Alu -17 294 1 2429 58 7 3 chr4 2303254 2303562 -181985100 + AluY SINE Alu 1 309 -2 522 247 218 21 chr4 2303665 2304045 -181984617 + L1ME LINE L1 5267 5721 -400 289 173 214 0 chr4 2304081 2304191 -181984471 + L1ME4a LINE L1 5687 5819 -401 25 31 0 0 chr4 2305051 2305083 -181983579 + AT_rich Low_complexity Low_complexity 1 32 0 386 262 169 55 chr4 2305085 2305183 -181983479 + L1ME4a LINE L1 5827 5912 -209 2095 84 14 0 chr4 2305183 2305470 -181983192 - AluY SINE Alu -20 291 1 386 262 169 55 chr4 2305470 2305608 -181983054 + L1ME4a LINE L1 5912 6090 -31 289 219 115 31 chr4 2306522 2306618 -181982044 + MIR SINE MIR 63 166 -96 2098 102 10 3 chr4 2306779 2307083 -181981579 + AluSg SINE Alu 1 306 -4 2023 116 0 10 chr4 2307291 2307585 -181981077 - AluSx SINE Alu -21 291 1 234 147 162 59 chr4 2307679 2307747 -181980915 - MER113 DNA MER1_type? -46 475 401 266 220 55 11 chr4 2307747 2307838 -181980824 - L1MC3 LINE L1 -7 7778 7684 1334 289 94 15 chr4 2308922 2309735 -181978927 - L1ME3A LINE L1 -17 6153 5179 1695 162 3 19 chr4 2309735 2310043 -181978619 - AluJo SINE Alu -9 303 1 1334 289 94 15 chr4 2310043 2310286 -181978376 - L1ME3A LINE L1 -991 5179 4957 331 167 75 25 chr4 2310368 2310494 -181978168 - AluJb SINE Alu -7 295 238 4268 114 118 134 chr4 2310494 2311847 -181976815 + pTR5 LTR ERV1 815 2438 0 1616 131 0 0 chr4 2311855 2312091 -181976571 - AluJb SINE Alu -76 236 1 480 285 0 121 chr4 2312133 2312438 -181976224 - L1ME3A LINE L1 -1316 4830 4563 2145 114 0 7 chr4 2313396 2313703 -181974959 + AluSx SINE Alu 1 305 -7 28 22 0 22 chr4 2314003 2314025 -181974637 + AT_rich Low_complexity Low_complexity 1 22 -23 1762 163 0 7 chr4 2314025 2314314 -181974348 - AluJo SINE Alu -25 287 1 28 22 0 22 chr4 2314314 2314337 -181974325 + AT_rich Low_complexity Low_complexity 22 45 0 1856 119 32 3 chr4 2314596 2314881 -181973781 + AluSx SINE Alu 1 293 -19 456 104 0 0 chr4 2314886 2314953 -181973709 + (GGGGA)n Simple_repeat Simple_repeat 4 70 0 1715 159 0 28 chr4 2315523 2315813 -181972849 + AluJb SINE Alu 5 286 -26 195 319 28 69 chr4 2316643 2316787 -181971875 - MIR SINE MIR -32 230 93 1878 267 67 29 chr4 2316794 2317564 -181971098 + L1ME LINE L1 859 1644 -4436 634 149 57 71 chr4 2317649 2317790 -181970872 + FLAM_C SINE Alu 2 140 -3 2656 144 7 2 chr4 2317790 2318214 -181970448 + L1MA5 LINE L1 5490 5915 -385 * 4990 168 33 47 chr4 2318210 2319223 -181969439 - L1MC3 LINE L1 -1362 6423 5426 871 175 38 6 chr4 2319457 2319617 -181969045 - AluJo SINE Alu -14 298 134 1768 253 45 25 chr4 2322339 2322856 -181965806 - L1ME LINE L1 -5533 537 11 324 0 0 0 chr4 2323384 2323420 -181965242 + (TG)n Simple_repeat Simple_repeat 1 36 0 180 173 39 77 chr4 2323524 2323576 -181965086 + L2 LINE L2 3234 3283 -30 255 276 57 9 chr4 2325064 2325169 -181963493 - MIR SINE MIR -120 142 33 902 197 134 33 chr4 2325610 2325689 -181962973 + MLT1E LTR MaLR 243 313 -280 2043 104 12 61 chr4 2325689 2326017 -181962645 + AluSx SINE Alu 1 312 0 902 197 134 33 chr4 2326017 2326219 -181962443 + MLT1E LTR MaLR 313 592 -1 222 294 96 0 chr4 2326220 2326356 -181962306 - L2 LINE L2 -255 3058 2910 230 318 0 0 chr4 2326829 2326892 -181961770 + GA-rich Low_complexity Low_complexity 5 67 0 441 110 0 0 chr4 2328315 2328388 -181960274 + (GA)n Simple_repeat Simple_repeat 1 73 0 1378 256 105 67 chr4 2328399 2328989 -181959673 - L1M4 LINE L1 -5727 815 249 2151 99 3 0 chr4 2328989 2329281 -181959381 - AluSg SINE Alu -17 293 1 1378 256 105 67 chr4 2329281 2329308 -181959354 - L1M4 LINE L1 -6293 249 224 701 168 8 46 chr4 2329308 2329439 -181959223 - AluJo SINE Alu -172 130 5 1378 256 105 67 chr4 2329439 2329601 -181959061 - L1M4 LINE L1 -6318 224 5 1767 143 3 21 chr4 2329765 2330051 -181958611 + AluJb SINE Alu 1 281 -31 22 0 0 0 chr4 2330086 2330108 -181958554 + AT_rich Low_complexity Low_complexity 1 22 0 6495 182 20 18 chr4 2330167 2330552 -181958110 + L1MC3 LINE L1 6488 6871 -914 225 0 0 0 chr4 2330552 2330577 -181958085 + (CA)n Simple_repeat Simple_repeat 1 25 0 6495 182 20 18 chr4 2330577 2331485 -181957177 + L1MC3 LINE L1 6871 7784 -1 1540 126 4 8 chr4 2331492 2331730 -181956932 + AluJb SINE Alu 76 312 0 442 368 96 21 chr4 2331902 2332329 -181956333 + L1M4 LINE L1 4259 4717 -1429 303 260 41 89 chr4 2332679 2332825 -181955837 + L1M4 LINE L1 4917 5055 -1091 7359 206 18 48 chr4 2332901 2335864 -181952798 + L1M2 LINE L1 10 2867 -3982 1484 153 43 0 chr4 2335866 2336148 -181952514 - L1M4 LINE L1 -368 5816 5523 310 323 264 0 chr4 2336644 2336997 -181951665 + L2 LINE L2 2239 2684 -630 353 232 143 0 chr4 2337042 2337154 -181951508 + HAL1 LINE L1 5 132 -2375 474 18 0 0 chr4 2337435 2337490 -181951172 + (ATG)n Simple_repeat Simple_repeat 2 56 0 264 322 0 33 chr4 2337510 2337600 -181951062 + L2 LINE L2 1868 1954 -1360 829 316 58 69 chr4 2338286 2338893 -181949769 - L1M4 LINE L1 -1254 5687 5088 212 320 190 28 chr4 2339097 2339350 -181949312 - L2 LINE L2 -562 2752 2459 180 353 47 0 chr4 2339389 2339474 -181949188 - L2 LINE L2 -967 2347 2259 191 281 90 42 chr4 2339606 2339773 -181948889 + L2 LINE L2 2909 3083 -189 473 307 95 26 chr4 2339855 2340086 -181948576 + MIR SINE MIR 16 262 0 2215 265 80 57 chr4 2341130 2341629 -181947033 - L1MCc LINE L1 -3614 3327 2841 22366 24 0 0 chr4 2341629 2345030 -181943632 + L1PA4 LINE L1 2746 6153 -2 2215 265 80 57 chr4 2345030 2345208 -181943454 - L1MCc LINE L1 -4100 2841 2669 2015 131 3 0 chr4 2345208 2345530 -181943132 + AluSx SINE Alu 1 323 0 1795 174 3 0 chr4 2345531 2345824 -181942838 - AluJb SINE Alu -18 294 1 2215 265 80 57 chr4 2345824 2346667 -181941995 - L1MCc LINE L1 -4272 2669 1578 1903 136 3 10 chr4 2346667 2346834 -181941828 - AluSx SINE Alu -6 306 140 189 0 0 0 chr4 2346834 2346855 -181941807 + (TA)n Simple_repeat Simple_repeat 1 21 0 1903 136 3 10 chr4 2346855 2346995 -181941667 - AluSx SINE Alu -172 140 1 2215 265 80 57 chr4 2346995 2347417 -181941245 - L1MCc LINE L1 -5363 1578 1167 265 234 4 32 chr4 2347658 2347738 -181940924 - MIR SINE MIR -61 147 69 213 182 0 0 chr4 2347864 2347897 -181940765 + C-rich Low_complexity Low_complexity 1 33 0 182 276 52 17 chr4 2349508 2349566 -181939096 - MIR SINE MIR -67 141 82 183 269 104 0 chr4 2349915 2349982 -181938680 - L2 LINE L2 -52 3261 3188 237 98 16 49 chr4 2351380 2351441 -181937221 + (CCCG)n Simple_repeat Simple_repeat 1 59 0 204 182 0 0 chr4 2355344 2355388 -181933274 + (TG)n Simple_repeat Simple_repeat 1 44 0 386 385 0 22 chr4 2355412 2355594 -181933068 + (CGTG)n Simple_repeat Simple_repeat 2 179 0 * 517 344 6 6 chr4 2355490 2355670 -181932992 + (TG)n Simple_repeat Simple_repeat 1 180 0 414 320 11 17 chr4 2355744 2355925 -181932737 + (TG)n Simple_repeat Simple_repeat 1 180 0 269 333 11 0 chr4 2358409 2358499 -181930163 + MIR SINE MIR 105 195 -67 202 320 13 0 chr4 2359636 2359714 -181928948 + (CA)n Simple_repeat Simple_repeat 1 79 0 534 173 39 47 chr4 2365706 2365833 -181922829 - AluSg/x SINE Alu -2 310 185 1739 131 34 37 chr4 2366177 2366474 -181922188 - AluJb SINE Alu -16 296 1 206 278 10 0 chr4 2366680 2366777 -181921885 + (TG)n Simple_repeat Simple_repeat 2 99 0 2187 104 7 0 chr4 2366830 2367128 -181921534 - AluSx SINE Alu -12 300 1 2074 121 3 3 chr4 2369486 2369793 -181918869 - AluSx SINE Alu -5 307 1 328 169 28 0 chr4 2369995 2370066 -181918596 - MER69 DNA AcHobo -3 2523 2451 * 414 248 88 9 chr4 2370065 2370178 -181918484 - MER69 DNA AcHobo -1854 672 551 1129 330 67 16 chr4 2370306 2371070 -181917592 - L1MEc LINE L1 -5557 839 37 853 297 147 5 chr4 2371070 2371491 -181917171 - MER69 DNA AcHobo -1982 544 64 200 321 47 28 chr4 2371940 2372046 -181916616 + L2 LINE L2 3120 3227 -86 865 310 81 52 chr4 2372391 2372871 -181915791 - L1ME LINE L1 -2976 3104 2611 184 274 274 0 chr4 2373465 2373567 -181915095 - L2 LINE L2 0 3272 3143 755 160 0 76 chr4 2373729 2373873 -181914789 + FLAM_C SINE Alu 1 133 0 290 300 75 59 chr4 2373888 2374130 -181914532 + MIR SINE MIR 8 256 -6 995 208 68 12 chr4 2375009 2375346 -181913316 - L1ME LINE L1 -5133 937 582 2720 194 5 52 chr4 2475347 2475976 -181812686 + LTR49-int LTR ERV1 1987 2585 -3746 6189 227 63 43 chr4 2575979 2576433 -181712229 + L1MEc LINE L1 333 776 -5439 2356 99 3 13 chr4 2576433 2576747 -181711915 + AluSp SINE Alu 1 311 -2 2222 83 42 3 chr4 2576748 2577036 -181711626 + AluY SINE Alu 1 299 -12 6189 227 63 43 chr4 2577036 2577865 -181710797 + L1MEc LINE L1 776 1586 -4629 2430 71 0 40 chr4 2577865 2578188 -181710474 + AluY SINE Alu 1 310 -1 6189 227 63 43 chr4 2578188 2580462 -181708200 + L1MEc LINE L1 1586 3924 -2291 300 290 37 11 chr4 2580462 2580551 -181708111 + MER5B DNA MER1_type 61 163 -26 270 299 56 56 chr4 2580839 2580946 -181707716 + MIR3 SINE MIR 95 201 -7 2238 36 4 4 chr4 2581072 2581346 -181707316 + L1PA3 LINE L1 5880 6153 -2 258 250 140 20 chr4 2581390 2581490 -181707172 - L2 LINE L2 -9 3304 3193 996 219 165 37 chr4 2581548 2581844 -181706818 + L1MEc LINE L1 3908 4270 -1945 345 24 0 0 chr4 2581844 2581886 -181706776 + (CA)n Simple_repeat Simple_repeat 2 43 0 996 219 165 37 chr4 2581886 2581990 -181706672 + L1MEc LINE L1 4270 4359 -1856 2673 46 0 0 chr4 2582002 2582308 -181706354 + AluY SINE Alu 1 306 -5 3209 197 45 38 chr4 2582309 2583146 -181705516 + MER21B LTR ERV1 1 843 -20 327 241 0 0 chr4 2583164 2583251 -181705411 + L1MEc LINE L1 4354 4440 -1775 2178 105 0 0 chr4 2583251 2583528 -181705134 + AluSx SINE Alu 1 277 -35 945 203 30 0 chr4 2583528 2583725 -181704937 - MER21B LTR ERV1 -194 669 467 1107 209 67 4 chr4 2583775 2584000 -181704662 + MER8 DNA MER2_type 1 239 0 256 219 0 41 chr4 2584194 2584267 -181704395 + GA-rich Low_complexity Low_complexity 1 70 0 2421 105 0 0 chr4 2586273 2586578 -181702084 - AluSq SINE Alu -8 305 1 585 0 0 0 chr4 2587018 2587083 -181701579 + (TA)n Simple_repeat Simple_repeat 1 65 0 2354 109 0 0 chr4 2587089 2587392 -181701270 - AluSg SINE Alu -7 303 1 1850 163 3 3 chr4 2587402 2587690 -181700972 - AluJo SINE Alu -24 288 1 1992 124 0 59 chr4 2588673 2588980 -181699682 - AluSx SINE Alu -22 290 2 384 376 6 0 chr4 2589932 2590094 -181698568 + (TG)n Simple_repeat Simple_repeat 1 163 0 1493 185 10 89 chr4 2590483 2590594 -181698068 + MLT1B LTR MaLR 1 119 -271 1814 148 0 43 chr4 2590594 2590753 -181697909 - AluJo SINE Alu -20 292 151 2326 80 0 22 chr4 2590753 2591065 -181697597 - AluY SINE Alu -6 305 1 1814 148 0 43 chr4 2591065 2591210 -181697452 - AluJo SINE Alu -161 151 1 1493 185 10 89 chr4 2591210 2591504 -181697158 + MLT1B LTR MaLR 119 374 -16 444 67 0 0 chr4 2592174 2592234 -181696428 + (CA)n Simple_repeat Simple_repeat 1 60 0 1668 190 122 117 chr4 2595021 2595594 -181693068 + MER70B LTR ERVL 1 576 -2 322 324 41 14 chr4 2595597 2595742 -181692920 - MIR SINE MIR -77 185 37 254 153 85 17 chr4 2599829 2599888 -181688774 - L1MB7 LINE L1 -10 6174 6112 739 104 0 0 chr4 2599915 2600021 -181688641 + FLAM_C SINE Alu 37 142 -1 1020 178 23 0 chr4 2600021 2600195 -181688467 + AluJb SINE Alu 105 282 -30 2871 198 96 14 chr4 2600195 2600916 -181687746 - L1MB7 LINE L1 -57 6127 5348 900 221 82 41 chr4 2601287 2601635 -181687027 + MLT1C LTR MaLR 42 411 -56 2312 101 3 0 chr4 2601652 2601960 -181686702 - AluSc SINE Alu 0 309 1 191 36 36 0 chr4 2603460 2603488 -181685174 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 283 309 0 0 chr4 2605200 2605284 -181683378 + (TGG)n Simple_repeat Simple_repeat 1 84 0 3364 191 80 25 chr4 2608005 2608950 -181679712 - L1MB5 LINE L1 0 6174 5152 3569 22 0 0 chr4 2608950 2609360 -181679302 - L1PA2 LINE L1 0 6155 5746 3364 191 80 25 chr4 2609360 2609472 -181679190 - L1MB5 LINE L1 -1022 5152 5048 1397 168 111 0 chr4 2609473 2609770 -181678892 - MLT2D LTR ERVL -8 406 77 1602 206 30 0 chr4 2611000 2611301 -181677361 - AluJo SINE Alu -2 310 1 6439 145 38 58 chr4 2611324 2612377 -181676285 - L1MB7 LINE L1 -845 5301 4229 2137 110 0 0 chr4 2612377 2612659 -181676003 + AluSg SINE Alu 1 282 -28 180 0 0 0 chr4 2612659 2612679 -181675983 + (TA)n Simple_repeat Simple_repeat 2 21 0 6439 145 38 58 chr4 2612679 2613151 -181675511 - L1MB7 LINE L1 -1915 4231 3805 3998 170 62 9 chr4 2613150 2614044 -181674618 + L1MA7 LINE L1 5341 6281 -10 * 580 126 0 0 chr4 2614062 2614157 -181674505 - MLT2D LTR ERVL -319 95 1 2199 211 27 9 chr4 2614187 2614746 -181673916 - L1MB5 LINE L1 -1188 4958 4390 770 110 0 0 chr4 2614777 2614904 -181673758 + L1MB4 LINE L1 5786 5912 -271 287 49 0 0 chr4 2614905 2614946 -181673716 - MADE1 DNA Mariner 0 80 40 280 125 36 0 chr4 2614948 2615004 -181673658 + L1MB4 LINE L1 6123 6180 0 232 288 16 24 chr4 2615153 2615278 -181673384 - L1ME LINE L1 -325 5796 5673 836 203 52 48 chr4 2615399 2615650 -181673012 + L1MB8 LINE L1 5914 6165 -13 237 253 6 69 chr4 2615834 2616008 -181672654 + GA-rich Low_complexity Low_complexity 3 165 0 367 243 0 42 chr4 2616405 2616549 -181672113 + GA-rich Low_complexity Low_complexity 2 139 0 777 167 0 67 chr4 2616728 2616878 -181671784 + FLAM_C SINE Alu 1 140 -3 211 358 15 0 chr4 2617919 2617986 -181670676 + L2 LINE L2 3241 3308 -5 342 344 0 16 chr4 2618521 2618704 -181669958 + C-rich Low_complexity Low_complexity 1 180 0 183 98 0 78 chr4 2620105 2620156 -181668506 + (CCCCCT)n Simple_repeat Simple_repeat 2 48 0 955 224 117 13 chr4 2620516 2620815 -181667847 + LTR53 LTR ERVL 190 519 0 217 203 51 13 chr4 2622028 2622186 -181666476 + (AGGTG)n Simple_repeat Simple_repeat 3 166 0 182 224 48 0 chr4 2622202 2622349 -181666313 + (TGAG)n Simple_repeat Simple_repeat 3 156 0 1478 176 40 0 chr4 2622890 2623163 -181665499 + AluJo SINE Alu 5 288 -24 1911 131 0 17 chr4 2623593 2623907 -181664755 + AluSx SINE Alu 1 309 0 1796 115 51 14 chr4 2624102 2624397 -181664265 - AluY SINE Alu -2 309 4 342 139 0 0 chr4 2625178 2625250 -181663412 + (GGGGA)n Simple_repeat Simple_repeat 2 73 0 205 222 67 0 chr4 2626290 2626352 -181662310 + MIR SINE MIR 89 153 -62 1995 108 0 0 chr4 2627026 2627294 -181661368 + AluSx SINE Alu 1 268 -44 186 359 13 0 chr4 2627581 2627659 -181661003 + MIR SINE MIR 61 139 -69 896 186 0 0 chr4 2627684 2627845 -181660817 - FRAM SINE Alu -14 162 2 392 263 8 45 chr4 2628465 2628598 -181660064 - L1ME LINE L1 -457 5664 5537 22 35 0 0 chr4 2628763 2628792 -181659870 + AT_rich Low_complexity Low_complexity 1 29 0 390 234 75 0 chr4 2629120 2629227 -181659435 + L2 LINE L2 3187 3301 -12 698 264 125 0 chr4 2629227 2629443 -181659219 + L1MEc LINE L1 34 276 -6120 207 162 0 0 chr4 2629494 2629531 -181659131 + GA-rich Low_complexity Low_complexity 4 40 0 1681 181 7 16 chr4 2629634 2629944 -181658718 - AluJo SINE Alu -3 309 3 244 228 0 0 chr4 2629951 2630008 -181658654 + L1ME4a LINE L1 6061 6117 -4 209 276 67 75 chr4 2630982 2631116 -181657546 + L2 LINE L2 3138 3270 -2 1084 291 59 0 chr4 2632314 2632720 -181655942 + L1MB7 LINE L1 5477 5906 -278 397 311 50 93 chr4 2635750 2636030 -181652632 - L2 LINE L2 0 3272 3005 239 281 0 0 chr4 2636206 2636263 -181652399 - L1ME3A LINE L1 -69 6170 6114 524 151 35 126 chr4 2636422 2636621 -181652041 - MER53 DNA DNA -6 183 3 308 351 161 0 chr4 2636626 2636837 -181651825 - L1ME3A LINE L1 -306 5933 5689 1256 243 71 42 chr4 2636898 2637343 -181651319 - L1ME3A LINE L1 -651 5584 5107 1525 159 37 40 chr4 2637343 2637639 -181651023 - AluJo SINE Alu -15 297 3 1256 243 71 42 chr4 2637639 2637946 -181650716 - L1ME3A LINE L1 -1128 5107 4810 198 0 0 0 chr4 2637962 2637984 -181650678 + (TTC)n Simple_repeat Simple_repeat 3 24 0 804 219 0 0 chr4 2637986 2638132 -181650530 - FRAM SINE Alu -30 146 1 356 252 135 0 chr4 2638153 2638264 -181650398 + L1ME LINE L1 5645 5770 -400 343 206 0 0 chr4 2638278 2638346 -181650316 - L1ME3A LINE L1 -1464 4751 4684 231 167 0 0 chr4 2638346 2638388 -181650274 + GA-rich Low_complexity Low_complexity 1 42 0 312 374 83 0 chr4 2638388 2638618 -181650044 + L1M4c LINE L1 947 1195 -5189 395 345 55 0 chr4 2638657 2638877 -181649785 - L1ME3A LINE L1 -1538 4677 4446 1335 185 188 28 chr4 2638877 2639271 -181649391 + MSTB2 LTR MaLR 1 457 0 825 243 45 39 chr4 2639274 2639583 -181649079 - L1ME3A LINE L1 -1774 4441 4131 2022 247 33 54 chr4 2639712 2639896 -181648766 - L1ME3A LINE L1 -2163 4052 3866 1774 190 0 0 chr4 2639896 2640196 -181648466 - AluJb SINE Alu -10 302 3 2022 247 33 54 chr4 2640196 2640381 -181648281 - L1ME3A LINE L1 -2349 3866 3679 1757 189 3 0 chr4 2640381 2640678 -181647984 + AluJb SINE Alu 1 298 -14 2022 247 33 54 chr4 2640678 2641103 -181647559 - L1ME3A LINE L1 -2536 3679 3277 2034 128 0 7 chr4 2641103 2641399 -181647263 + AluSg SINE Alu 1 294 -16 2022 247 33 54 chr4 2641399 2641633 -181647029 - L1ME3A LINE L1 -2938 3277 3040 1033 192 0 0 chr4 2641634 2641816 -181646846 - AluJo SINE Alu -10 302 121 458 173 0 37 chr4 2641892 2641973 -181646689 + AluSc SINE Alu 122 199 -110 688 118 0 0 chr4 2641975 2642068 -181646594 - AluJ/FLAM SINE Alu -218 94 2 1289 269 50 76 chr4 2642074 2642123 -181646539 - L1MEc LINE L1 -3184 3031 2982 637 180 62 23 chr4 2642123 2642251 -181646411 + FLAM_C SINE Alu 1 133 0 1289 269 50 76 chr4 2642251 2642306 -181646356 - L1MEc LINE L1 -3233 2982 2927 2514 45 3 0 chr4 2642306 2642614 -181646048 + AluY SINE Alu 1 309 -2 1992 138 0 3 chr4 2642622 2642920 -181645742 + AluSx SINE Alu 1 297 -15 1289 269 50 76 chr4 2642920 2643108 -181645554 - L1MEc LINE L1 -3295 2920 2729 1566 201 10 0 chr4 2643108 2643417 -181645245 - AluJo SINE Alu 0 312 1 1289 269 50 76 chr4 2643417 2643447 -181645215 - L1MEc LINE L1 -3486 2729 2700 1769 106 81 21 chr4 2643447 2643730 -181644932 + AluSx SINE Alu 5 304 -8 1289 269 50 76 chr4 2643730 2644453 -181644209 - L1MEc LINE L1 -3515 2700 2023 1727 137 28 11 chr4 2644651 2644935 -181643727 - AluJo SINE Alu -23 289 1 964 249 63 86 chr4 2644946 2645139 -181643523 - L1MEc LINE L1 -4634 1762 1566 1886 123 44 0 chr4 2645139 2645432 -181643230 - AluSx SINE Alu -6 306 1 964 249 63 86 chr4 2645432 2646028 -181642634 - L1MEc LINE L1 -4830 1566 991 1801 154 6 40 chr4 2646041 2646365 -181642297 - 7SLRNA srpRNA srpRNA -6 314 2 1999 116 0 0 chr4 2646545 2646829 -181641833 - AluY SINE Alu -5 306 23 2182 112 3 10 chr4 2646832 2647146 -181641516 - AluSx SINE Alu 0 312 1 2156 112 3 0 chr4 2647485 2647790 -181640872 - AluSx SINE Alu -6 306 1 1913 85 4 0 chr4 2648134 2648382 -181640280 + AluSx SINE Alu 1 249 -63 862 157 42 48 chr4 2648621 2648787 -181639875 + AluJo SINE Alu 6 170 -142 1886 89 4 0 chr4 2749378 2749614 -181539048 + AluSg SINE Alu 59 295 -15 740 118 97 28 chr4 2749629 2749773 -181538889 + Tigger7 DNA MER2_type 2311 2464 -27 1382 109 0 0 chr4 2749780 2749955 -181538707 + AluSq SINE Alu 1 175 -138 223 25 50 25 chr4 2749962 2750002 -181538660 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1537 155 200 70 chr4 2750080 2750325 -181538337 + Tigger3b DNA MER2_type 1 213 -2815 2312 103 0 25 chr4 2750325 2750645 -181538017 - AluSq SINE Alu -1 312 1 1537 155 200 70 chr4 2750645 2750691 -181537971 + Tigger3b DNA MER2_type 213 252 -2776 1477 189 71 27 chr4 2750691 2750988 -181537674 + AluJb SINE Alu 1 310 -2 1537 155 200 70 chr4 2750988 2751179 -181537483 + Tigger3b DNA MER2_type 252 547 -684 2140 136 0 10 chr4 2751208 2751518 -181537144 + AluSg SINE Alu 1 307 -3 320 260 81 16 chr4 2751528 2751651 -181537011 + L1M4 LINE L1 3826 3956 -2190 1324 120 43 14 chr4 2751652 2751861 -181536801 + AluSg/x SINE Alu 96 310 -2 2327 88 3 7 chr4 2751887 2752181 -181536481 + AluSx SINE Alu 13 305 -7 670 178 0 15 chr4 2752314 2752449 -181536213 + FLAM_C SINE Alu 1 133 0 2334 97 0 0 chr4 2752477 2752775 -181535887 + AluSx SINE Alu 1 298 -14 227 368 74 0 chr4 2758574 2758737 -181529925 + MIR SINE MIR 70 244 -18 2269 110 7 0 chr4 2760304 2760603 -181528059 + AluSq SINE Alu 1 301 -12 2235 109 20 0 chr4 2760606 2760910 -181527752 + AluSq SINE Alu 4 313 0 2185 95 3 7 chr4 2760910 2761266 -181527396 + AluSp SINE Alu 1 355 0 1735 178 30 3 chr4 2761675 2761979 -181526683 + AluJb SINE Alu 1 312 0 269 109 22 0 chr4 2762588 2762634 -181526028 + CT-rich Low_complexity Low_complexity 2 48 0 1906 170 0 16 chr4 2762952 2763269 -181525393 + AluJb SINE Alu 1 312 0 2018 161 7 0 chr4 2763340 2763644 -181525018 + AluSx SINE Alu 1 306 -6 1349 122 149 9 chr4 2763872 2764094 -181524568 + AluSg1 SINE Alu 53 305 -4 2564 64 0 0 chr4 2764193 2764490 -181524172 + AluY SINE Alu 1 297 -14 2339 101 3 16 chr4 2764785 2765101 -181523561 + AluSx SINE Alu 1 312 0 1188 99 0 0 chr4 2765101 2765295 -181523367 + AluY SINE Alu 132 325 0 515 206 204 21 chr4 2765305 2765603 -181523059 + L1ME LINE L1 5327 5659 -511 669 161 0 8 chr4 2765749 2765867 -181522795 - FLAM_A SINE Alu -8 134 18 205 307 110 24 chr4 2766255 2766382 -181522280 - MIR3 SINE MIR -41 167 30 1546 163 3 83 chr4 2766651 2766951 -181521711 + AluJo SINE Alu 7 282 -30 1370 104 0 0 chr4 2766951 2767124 -181521538 - AluSg/x SINE Alu -6 304 132 2253 93 41 0 chr4 2767124 2767415 -181521247 - AluSg SINE Alu -7 303 1 265 297 148 33 chr4 2768556 2768738 -181519924 - MIR SINE MIR -7 255 53 2414 88 0 10 chr4 2769640 2769946 -181518716 - AluSg1 SINE Alu -6 303 1 21 0 0 0 chr4 2770214 2770235 -181518427 + AT_rich Low_complexity Low_complexity 1 21 0 2069 110 58 3 chr4 2770245 2770537 -181518125 + AluSp SINE Alu 1 308 -5 427 115 0 0 chr4 2870539 2870600 -181418062 + AluS SINE Alu 233 293 -18 1574 156 10 27 chr4 2872342 2872637 -181416025 + AluJo SINE Alu 1 290 -22 1886 127 37 3 chr4 2872880 2873180 -181415482 + AluSx SINE Alu 1 310 -2 873 184 13 0 chr4 2873616 2873774 -181414888 - FRAM SINE Alu -16 160 1 3151 203 116 93 chr4 2874482 2874900 -181413762 - Charlie7 DNA MER1_type -111 2501 2094 2414 51 0 29 chr4 2874900 2875215 -181413447 + AluY SINE Alu 1 306 -5 3151 203 116 93 chr4 2875215 2875448 -181413214 - Charlie7 DNA MER1_type -518 2094 1868 2076 103 10 3 chr4 2875448 2875740 -181412922 - AluSx SINE Alu -18 294 1 3151 203 116 93 chr4 2875740 2875801 -181412861 - Charlie7 DNA MER1_type -744 1868 1810 2308 75 0 0 chr4 2875801 2876096 -181412566 + AluY SINE Alu 1 295 -16 3151 203 116 93 chr4 2876096 2876592 -181412070 - Charlie7 DNA MER1_type -802 1810 1327 2051 114 7 10 chr4 2876592 2876898 -181411764 + AluSc SINE Alu 1 305 -4 3151 203 116 93 chr4 2876898 2877052 -181411610 - Charlie7 DNA MER1_type -1285 1327 1178 1399 144 59 46 chr4 2877052 2877357 -181411305 + AluJo SINE Alu 1 309 -3 3151 203 116 93 chr4 2877357 2877531 -181411131 - Charlie7 DNA MER1_type -1434 1178 926 1608 148 34 17 chr4 2877770 2878061 -181410601 + AluJb SINE Alu 1 296 -16 1210 238 127 19 chr4 2878171 2878582 -181410080 - Charlie7 DNA MER1_type -1749 863 409 646 169 113 8 chr4 2878606 2878730 -181409932 - FLAM_C SINE Alu -4 139 3 2351 88 0 0 chr4 2878911 2879219 -181409443 + AluSg SINE Alu 1 308 -2 2133 106 3 0 chr4 2879227 2879530 -181409132 + AluSg SINE Alu 2 305 -5 1573 160 11 14 chr4 2879706 2879988 -181408674 - AluJo SINE Alu -31 281 1 281 310 14 0 chr4 2880036 2880107 -181408555 - MIR3 SINE MIR -23 185 114 2247 95 0 0 chr4 2880357 2880661 -181408001 + AluSx SINE Alu 1 304 -8 1843 147 3 7 chr4 2880672 2880972 -181407690 + AluSx SINE Alu 1 299 -13 809 140 0 37 chr4 2881202 2881338 -181407324 + AluJ SINE Alu 1 131 -181 2058 92 58 3 chr4 2881912 2882207 -181406455 + AluSq SINE Alu 1 311 -2 876 222 0 0 chr4 2882560 2882722 -181405940 + AluJ SINE Alu 137 298 -4 287 234 9 56 chr4 2882844 2882951 -181405711 + MIR3 SINE MIR 106 207 -1 1862 143 10 3 chr4 2883135 2883436 -181405226 - AluSx SINE Alu -9 303 1 1086 216 7 33 chr4 2883465 2883738 -181404924 + AluJo SINE Alu 1 266 -46 1937 136 13 7 chr4 2883853 2884163 -181404499 - AluSx SINE Alu 0 312 1 2189 92 0 7 chr4 2884189 2884483 -181404179 - AluSc SINE Alu -17 292 1 846 181 99 45 chr4 2884600 2884821 -181403841 + L1MD3 LINE L1 7696 7928 -67 1840 149 24 24 chr4 2884846 2885175 -181403487 + MER44D DNA MER2_type 11 609 0 403 92 0 0 chr4 2885175 2885240 -181403422 + L1MC3 LINE L1 7721 7785 0 1498 166 6 110 chr4 2885461 2885650 -181403012 - AluJb SINE Alu -9 293 86 2111 89 10 3 chr4 2885650 2885943 -181402719 + AluSc SINE Alu 1 295 -14 1498 166 6 110 chr4 2885943 2885958 -181402704 - AluJb SINE Alu -216 86 71 1898 115 31 0 chr4 2885958 2886245 -181402417 + AluSq SINE Alu 1 296 -17 2181 82 3 0 chr4 2886253 2886545 -181402117 + AluY SINE Alu 16 308 -3 1498 166 6 110 chr4 2886545 2886656 -181402006 - AluJb SINE Alu -238 64 2 299 173 0 19 chr4 2886769 2886821 -181401841 - Alu SINE Alu -250 52 2 2304 223 106 66 chr4 2887168 2887770 -181400892 + L1ME1 LINE L1 2226 2802 -3344 2008 120 0 3 chr4 2887770 2888071 -181400591 + AluSg SINE Alu 1 300 -10 2304 223 106 66 chr4 2888071 2888103 -181400559 + L1ME1 LINE L1 2802 2831 -3315 2002 138 51 28 chr4 2888103 2888459 -181400203 - THE1B LTR MaLR 0 364 1 2304 223 106 66 chr4 2888459 2888491 -181400171 + L1ME1 LINE L1 2831 2860 -3286 2202 80 0 0 chr4 2888491 2888780 -181399882 + AluSc SINE Alu 17 305 -4 2304 223 106 66 chr4 2888780 2888805 -181399857 + L1ME1 LINE L1 2860 2883 -3263 814 206 6 24 chr4 2888805 2888970 -181399692 - FAM SINE Alu -13 162 1 2304 223 106 66 chr4 2888970 2889006 -181399656 + L1ME1 LINE L1 2883 2916 -3230 1812 151 10 3 chr4 2889006 2889310 -181399352 + AluSx SINE Alu 1 306 -6 2160 75 4 0 chr4 2889317 2889620 -181399042 + AluY SINE Alu 1 304 0 2304 223 106 66 chr4 2889620 2889705 -181398957 + L1ME1 LINE L1 2921 3001 -3145 1612 173 0 31 chr4 2889705 2889842 -181398820 + AluJo SINE Alu 3 143 -169 2458 56 0 0 chr4 2889842 2890145 -181398517 + AluY SINE Alu 1 303 -8 1612 173 0 31 chr4 2890145 2890325 -181398337 + AluJo SINE Alu 143 310 -2 2304 223 106 66 chr4 2890325 2890639 -181398023 + L1ME1 LINE L1 3001 3412 -2734 544 247 45 56 chr4 2890654 2890705 -181397957 + L1ME1 LINE L1 3609 3659 -2487 1272 181 17 0 chr4 2890705 2890937 -181397725 + MER46A DNA MER2_type 1 236 0 544 247 45 56 chr4 2890937 2891067 -181397595 + L1ME1 LINE L1 3659 3789 -2357 2091 88 3 10 chr4 2891067 2891417 -181397245 + AluY SINE Alu 14 311 0 2136 85 4 0 chr4 2891421 2891726 -181396936 + AluSp SINE Alu 4 309 0 544 247 45 56 chr4 2891726 2891804 -181396858 + L1ME1 LINE L1 3792 3872 -2274 1695 169 0 28 chr4 2891808 2892128 -181396534 + AluSx SINE Alu 1 311 -1 2022 133 0 3 chr4 2892128 2892429 -181396233 + AluSg SINE Alu 1 301 -9 460 214 12 89 chr4 2892429 2892458 -181396204 + L1ME1 LINE L1 5027 5057 -1089 2768 13 0 0 chr4 2892458 2892769 -181395893 + AluYa5 SINE Alu 1 311 0 460 214 12 89 chr4 2892769 2892907 -181395755 + L1ME1 LINE L1 5057 5181 -965 1972 126 7 10 chr4 2892918 2893228 -181395434 + AluSx SINE Alu 3 311 -1 1136 231 70 107 chr4 2893230 2893396 -181395266 + L1MB2 LINE L1 5024 5195 -976 1926 148 0 0 chr4 2893396 2893686 -181394976 + AluSx SINE Alu 1 290 -22 1136 231 70 107 chr4 2893686 2893782 -181394880 + L1MB2 LINE L1 5195 5293 -878 2177 91 7 0 chr4 2893782 2894080 -181394582 + AluSq SINE Alu 1 300 -13 1136 231 70 107 chr4 2894080 2894227 -181394435 + L1MB2 LINE L1 5293 5444 -727 1973 129 3 0 chr4 2894227 2894521 -181394141 + AluSx SINE Alu 1 295 -17 321 68 0 0 chr4 2894522 2894566 -181394096 + (CA)n Simple_repeat Simple_repeat 2 45 0 1136 231 70 107 chr4 2894566 2894602 -181394060 + L1MB2 LINE L1 5444 5480 -691 899 211 131 65 chr4 2894602 2894726 -181393936 + AluJo SINE Alu 1 115 -187 223 37 0 0 chr4 2894726 2894753 -181393909 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1907 123 0 20 chr4 2894753 2895046 -181393616 - AluSq SINE Alu -26 287 1 899 211 131 65 chr4 2895046 2895082 -181393580 + AluJo SINE Alu 112 291 -9 681 180 9 0 chr4 2895082 2895193 -181393469 + AluSq/x SINE Alu 14 125 -188 1136 231 70 107 chr4 2895195 2895655 -181393007 + L1MB2 LINE L1 5480 5921 -250 * 2236 234 58 30 chr4 2895213 2895850 -181392812 + L1ME1 LINE L1 5468 6122 -44 1308 189 10 69 chr4 2895861 2895992 -181392670 + AluJo SINE Alu 1 138 -174 2208 92 0 0 chr4 2895992 2896284 -181392378 - AluSg SINE Alu -18 292 1 1308 189 10 69 chr4 2896284 2896458 -181392204 + AluJo SINE Alu 138 288 -24 730 247 105 34 chr4 2896513 2896859 -181391803 + L1ME3A LINE L1 5556 5932 -234 2379 75 0 0 chr4 2896859 2897164 -181391498 + AluSx SINE Alu 1 305 -7 730 247 105 34 chr4 2897164 2897209 -181391453 + L1ME3A LINE L1 5932 5972 -194 1184 216 7 49 chr4 2897265 2897432 -181391230 - AluJo SINE Alu -14 298 148 2126 94 0 10 chr4 2897432 2897731 -181390931 - AluSg SINE Alu -14 296 1 1184 216 7 49 chr4 2897731 2897869 -181390793 - AluJo SINE Alu -164 148 6 1956 122 0 46 chr4 2898249 2898576 -181390086 - AluSx SINE Alu 0 312 1 762 148 0 87 chr4 2898584 2898733 -181389929 - AluJb SINE Alu -173 139 4 1933 126 3 7 chr4 2898765 2899066 -181389596 + AluSc SINE Alu 1 300 -9 1926 96 0 83 chr4 2899707 2899846 -181388816 + AluSx SINE Alu 1 99 -213 1929 125 31 0 chr4 2899846 2900133 -181388529 + AluSg SINE Alu 1 296 -14 1926 96 0 83 chr4 2900133 2900317 -181388345 + AluSx SINE Alu 99 297 -15 2193 97 0 0 chr4 2900415 2900704 -181387958 + AluSc SINE Alu 9 297 -12 850 140 0 14 chr4 2900793 2900936 -181387726 - AluSc SINE Alu -5 304 164 1201 98 6 0 chr4 2900941 2901105 -181387557 - AluSp SINE Alu -91 222 58 2194 97 3 42 chr4 3001203 3001345 -181287317 + AluSg SINE Alu 1 147 -163 2507 74 0 0 chr4 3001345 3001643 -181287019 + AluY SINE Alu 1 298 -13 2194 97 3 42 chr4 3001643 3001811 -181286851 + AluSg SINE Alu 147 299 -11 2016 132 35 0 chr4 3001939 3002227 -181286435 + AluSg SINE Alu 2 299 -11 2041 142 10 0 chr4 3003363 3003666 -181284996 + AluJb SINE Alu 1 306 -6 1367 163 106 12 chr4 3004253 3004498 -181284164 + AluJb SINE Alu 1 268 -44 764 177 0 0 chr4 3004544 3004668 -181283994 + FLAM_C SINE Alu 1 124 -9 37 23 0 0 chr4 3004668 3004712 -181283950 + AT_rich Low_complexity Low_complexity 1 44 0 1662 108 123 0 chr4 3004942 3005210 -181283452 + AluSx SINE Alu 1 301 -1 2419 62 3 7 chr4 3005916 3006206 -181282456 + AluSc SINE Alu 1 289 -20 1532 215 19 25 chr4 3006464 3006831 -181281831 + MLT1A1 LTR MaLR 1 365 0 2182 130 0 7 chr4 3007108 3007416 -181281246 - AluJb SINE Alu 0 312 7 318 313 120 37 chr4 3007603 3007903 -181280759 + L2 LINE L2 2478 2802 -512 545 245 38 43 chr4 3008055 3008239 -181280423 + LTR41 LTR ERVL 1 183 -590 1991 103 51 7 chr4 3008536 3008828 -181279834 - AluSq SINE Alu -8 305 1 306 320 53 34 chr4 3008897 3009103 -181279559 + L2 LINE L2 3084 3293 -20 423 269 113 76 chr4 3009268 3009404 -181279258 + L1MEc LINE L1 744 874 -5522 1906 156 3 19 chr4 3009404 3009719 -181278943 + AluSx SINE Alu 1 310 -2 1415 123 19 182 chr4 3009728 3010101 -181278561 + AluYb8 SINE Alu 3 314 -4 423 269 113 76 chr4 3010101 3010365 -181278297 + L1MEc LINE L1 881 1134 -5262 2080 109 0 4 chr4 3010365 3010499 -181278163 + AluSx SINE Alu 3 136 -176 2343 99 3 3 chr4 3010499 3010803 -181277859 + AluSp SINE Alu 1 304 -9 2080 109 0 4 chr4 3010803 3010942 -181277720 + AluSx SINE Alu 136 275 -37 225 0 0 0 chr4 3010947 3010972 -181277690 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 423 269 113 76 chr4 3010972 3011287 -181277375 + L1MEc LINE L1 1137 1503 -4893 1029 266 146 8 chr4 3011328 3011829 -181276833 + L1MEc LINE L1 1575 2144 -4252 1968 142 13 13 chr4 3011831 3012141 -181276521 + AluSg SINE Alu 1 310 0 1477 189 71 27 chr4 3012146 3012443 -181276219 + AluJb SINE Alu 1 310 -2 963 178 56 10 chr4 3012443 3012640 -181276022 + Tigger3b DNA MER2_type 341 546 -685 2516 62 3 0 chr4 3012663 3012976 -181275686 + AluY SINE Alu 1 314 0 716 165 0 0 chr4 3012976 3013091 -181275571 - AluJo/FLAM SINE Alu -196 116 2 2274 101 20 0 chr4 3013096 3013392 -181275270 - AluSp SINE Alu -11 302 1 1254 122 57 57 chr4 3013392 3013605 -181275057 + Tigger3b DNA MER2_type 968 1183 -1846 2224 114 7 0 chr4 3013605 3013912 -181274750 - AluSg SINE Alu -1 309 1 1254 122 57 57 chr4 3013912 3013943 -181274719 + Tigger3b DNA MER2_type 1182 1212 -20 233 218 91 0 chr4 3014058 3014113 -181274549 + Tigger3b DNA MER2_type 489 548 -684 2131 136 0 10 chr4 3014142 3014451 -181274211 + AluSg SINE Alu 1 306 -4 320 260 81 16 chr4 3014461 3014584 -181274078 + L1M4 LINE L1 3826 3956 -2190 1181 132 64 15 chr4 3014585 3014789 -181273873 + AluSc SINE Alu 94 307 -2 2199 86 14 7 chr4 3014815 3015105 -181273557 + AluSx SINE Alu 13 304 -8 555 188 45 15 chr4 3015242 3015375 -181273287 + FLAM_C SINE Alu 7 143 0 2251 98 7 0 chr4 3015393 3015689 -181272973 + AluSx SINE Alu 1 298 -14 2223 111 10 0 chr4 3023247 3023545 -181265117 + AluSq SINE Alu 1 301 -12 2191 109 23 0 chr4 3023548 3023851 -181264811 + AluSq SINE Alu 4 313 0 2325 103 3 6 chr4 3023851 3024207 -181264455 + AluSp SINE Alu 1 355 0 1700 172 36 3 chr4 3024614 3024916 -181263746 + AluJb SINE Alu 1 312 0 269 109 22 0 chr4 3025524 3025570 -181263092 + CT-rich Low_complexity Low_complexity 2 48 0 1906 170 0 16 chr4 3025885 3026202 -181262460 + AluJb SINE Alu 1 312 0 1898 161 23 0 chr4 3026273 3026572 -181262090 + AluSx SINE Alu 1 306 -6 1320 127 150 9 chr4 3026801 3027021 -181261641 + AluSg1 SINE Alu 55 305 -4 2356 70 31 0 chr4 3027120 3027407 -181261255 + AluY SINE Alu 1 296 -15 2274 108 6 16 chr4 3027702 3028017 -181260645 + AluSx SINE Alu 1 312 0 1145 100 7 0 chr4 3028017 3028210 -181260452 + AluY SINE Alu 132 325 0 515 214 201 13 chr4 3028220 3028526 -181260136 + L1MC/D LINE L1 5327 5673 -587 629 162 8 8 chr4 3028663 3028780 -181259882 - FLAM_A SINE Alu -8 134 18 205 307 110 24 chr4 3029166 3029293 -181259369 - MIR3 SINE MIR -41 167 30 1546 163 3 83 chr4 3029562 3029862 -181258800 + AluJo SINE Alu 7 282 -30 1325 105 6 0 chr4 3029862 3030034 -181258628 - AluSg/x SINE Alu -6 304 132 2087 98 59 0 chr4 3030034 3030320 -181258342 - AluSg SINE Alu -7 303 1 265 297 148 33 chr4 3031457 3031639 -181257023 - MIR SINE MIR -7 255 53 2345 86 7 10 chr4 3032533 3032836 -181255826 - AluSg1 SINE Alu -7 302 1 21 0 0 0 chr4 3033104 3033125 -181255537 + AT_rich Low_complexity Low_complexity 1 21 0 2050 111 57 7 chr4 3033135 3033433 -181255229 + AluSp SINE Alu 1 313 0 2294 92 3 0 chr4 3033504 3033796 -181254866 - AluSx SINE Alu -19 293 1 853 187 177 5 chr4 3033805 3034003 -181254659 - AluSg/x SINE Alu -13 296 65 23 0 0 0 chr4 3034083 3034106 -181254556 + AT_rich Low_complexity Low_complexity 1 23 0 2107 119 10 10 chr4 3034224 3034526 -181254136 + AluSx SINE Alu 1 302 -10 2252 103 17 0 chr4 3034773 3035073 -181253589 + AluY SINE Alu 1 305 -6 2133 129 0 0 chr4 3035942 3036229 -181252433 + AluSg SINE Alu 1 287 -23 2093 90 13 33 chr4 3036767 3037067 -181251595 + AluSq SINE Alu 1 294 -19 219 281 18 0 chr4 3037203 3037260 -181251402 + MIR SINE MIR 154 211 -51 4262 77 2 13 chr4 3037669 3038010 -181250652 + LTR10C LTR ERV1 1 334 -257 2286 82 10 13 chr4 3038010 3038313 -181250349 + AluY SINE Alu 1 302 -9 4262 77 2 13 chr4 3038313 3038569 -181250093 + LTR10C LTR ERV1 334 591 0 1761 119 4 4 chr4 3038600 3038852 -181249810 + AluSg SINE Alu 56 307 -3 1841 104 8 8 chr4 3038919 3039169 -181249493 - AluSg SINE Alu -6 304 55 260 260 27 47 chr4 3039373 3039523 -181249139 + L2 LINE L2 2914 3060 -212 1414 193 4 40 chr4 3040375 3040467 -181248195 + AluJo SINE Alu 35 129 -183 2494 63 7 0 chr4 3040467 3040766 -181247896 - AluY SINE Alu -10 301 1 1414 193 4 40 chr4 3040766 3040948 -181247714 + AluJo SINE Alu 129 299 -13 2003 117 57 0 chr4 3040949 3041232 -181247430 + AluSq SINE Alu 1 299 -14 1364 155 5 0 chr4 3041233 3041446 -181247216 + AluSg/x SINE Alu 85 298 -12 1341 171 93 8 chr4 3041605 3041862 -181246800 - AluJo SINE Alu -33 279 1 262 203 98 26 chr4 3043093 3043229 -181245433 - MER5A DNA MER1_type -1 188 1 2177 102 30 10 chr4 3043570 3043873 -181244789 + AluSq SINE Alu 1 309 -4 493 248 81 6 chr4 3043908 3044069 -181244593 + MIR SINE MIR 84 256 -6 2088 97 39 4 chr4 3044200 3044502 -181244160 - AluSx SINE Alu 0 312 1 1523 189 0 23 chr4 3044960 3045099 -181243563 + AluJb SINE Alu 1 133 -179 2262 116 6 6 chr4 3045099 3045410 -181243252 + AluSx SINE Alu 1 311 -1 1523 189 0 23 chr4 3045410 3045535 -181243127 + AluJb SINE Alu 133 259 -53 526 275 54 45 chr4 3046450 3046672 -181241990 - MIR SINE MIR -32 230 7 183 278 134 0 chr4 3046736 3046833 -181241829 + L2 LINE L2 2330 2439 -875 187 256 289 0 chr4 3046854 3046944 -181241718 + L2 LINE L2 3198 3313 0 188 355 81 17 chr4 3047726 3047898 -181240764 - L2 LINE L2 -563 2751 2569 296 162 88 0 chr4 3048121 3048189 -181240473 - Tigger5 DNA MER2_type 0 2323 2250 429 103 0 0 chr4 3048555 3048613 -181240049 + AluJ/FLAM SINE Alu 2 59 -253 976 103 109 0 chr4 3048950 3049124 -181239538 - Tigger3(Golem) DNA MER2_type -73 2956 2764 2002 111 26 7 chr4 3049124 3049431 -181239231 + AluSq SINE Alu 1 313 0 2035 128 0 0 chr4 3049438 3049726 -181238936 - AluSx SINE Alu -21 291 4 213 211 57 0 chr4 3049866 3049930 -181238732 + MIR SINE MIR 70 139 -69 360 335 54 6 chr4 3050015 3050182 -181238480 - L2 LINE L2 0 3313 3139 1362 139 0 9 chr4 3051325 3051541 -181237121 + AluJb SINE Alu 85 298 -14 2092 121 0 0 chr4 3052693 3052982 -181235680 + AluSx SINE Alu 15 303 -9 1607 123 11 58 chr4 3053009 3053285 -181235377 + AluJb SINE Alu 1 263 -49 2317 92 66 20 chr4 3053514 3053862 -181234800 - THE1B LTR MaLR 0 364 1 12073 89 8 6 chr4 3053862 3055440 -181233222 - THE1B-int LTR MaLR 0 1580 1 2093 112 55 60 chr4 3055440 3055653 -181233009 - THE1B LTR MaLR 0 364 152 1983 139 3 0 chr4 3055653 3055947 -181232715 - AluSg SINE Alu -15 295 1 2093 112 55 60 chr4 3055947 3056099 -181232563 - THE1B LTR MaLR -212 152 1 327 256 34 0 chr4 3056099 3056169 -181232493 + FAM SINE Alu 18 60 -242 1640 128 0 0 chr4 3056169 3056404 -181232258 + AluSx SINE Alu 1 235 -77 327 256 34 0 chr4 3056404 3056434 -181232228 + FAM SINE Alu 60 88 -78 537 176 0 42 chr4 3056434 3056553 -181232109 + FAM SINE Alu 72 185 0 2151 99 10 3 chr4 3056560 3056863 -181231799 + AluSg SINE Alu 1 305 -5 425 245 86 15 chr4 3057332 3057486 -181231176 + MIR SINE MIR 16 179 -83 1030 172 17 67 chr4 3057540 3057613 -181231049 + AluJo SINE Alu 74 149 -163 2195 78 0 0 chr4 3057613 3057919 -181230743 + AluY SINE Alu 1 306 0 1030 172 17 67 chr4 3057919 3058082 -181230580 + AluJo SINE Alu 149 299 -13 10326 117 56 117 chr4 3058082 3058204 -181230458 - Tigger1 DNA MER2_type -210 2208 2080 2244 92 0 7 chr4 3058204 3058508 -181230154 - AluSp SINE Alu -11 302 1 10326 117 56 117 chr4 3058508 3058850 -181229812 - Tigger1 DNA MER2_type -338 2080 1719 2107 94 0 29 chr4 3058850 3059157 -181229505 - AluSc SINE Alu -11 298 1 1534 145 0 34 chr4 3059158 3059420 -181229242 - AluSx SINE Alu -18 294 42 1929 117 3 7 chr4 3059429 3059720 -181228942 - AluSg1 SINE Alu -19 290 1 10326 117 56 117 chr4 3059720 3059858 -181228804 - Tigger1 DNA MER2_type -707 1711 1566 1980 115 7 7 chr4 3059858 3060144 -181228518 - AluSx SINE Alu -19 293 8 10326 117 56 117 chr4 3060144 3060190 -181228472 - Tigger1 DNA MER2_type -852 1566 1519 2273 80 3 0 chr4 3060190 3060489 -181228173 - AluY SINE Alu -9 302 3 10326 117 56 117 chr4 3060489 3060631 -181228031 - Tigger1 DNA MER2_type -899 1519 1370 793 128 0 94 chr4 3060631 3060780 -181227882 - FLAM_C SINE Alu -7 136 2 10326 117 56 117 chr4 3060780 3061984 -181226678 - Tigger1 DNA MER2_type -1048 1370 198 2159 115 0 3 chr4 3061984 3062288 -181226374 + AluSx SINE Alu 1 303 -9 10326 117 56 117 chr4 3062288 3062452 -181226210 - Tigger1 DNA MER2_type -2220 198 26 185 182 164 0 chr4 3062501 3062556 -181226106 + L2 LINE L2 3232 3295 -18 386 267 80 13 chr4 3062587 3062737 -181225925 + MER106B DNA MER1_type 896 1055 -4 363 235 0 24 chr4 3062979 3063064 -181225598 + MIR SINE MIR 50 132 -76 23 0 0 0 chr4 3064338 3064361 -181224301 + GC_rich Low_complexity Low_complexity 1 23 0 1799 80 0 16 chr4 3065097 3065346 -181223316 - AluSq SINE Alu -68 245 1 2295 35 0 28 chr4 3065545 3065863 -181222799 - AluY SINE Alu 0 310 1 1667 168 0 35 chr4 3065863 3066177 -181222485 - AluJb SINE Alu -7 305 1 1473 171 27 40 chr4 3066471 3066769 -181221893 + AluJb SINE Alu 1 294 -18 1294 147 9 0 chr4 3066914 3067125 -181221537 + AluJo SINE Alu 86 298 -14 196 162 54 0 chr4 3067270 3067307 -181221355 + MER5A DNA MER1_type 64 102 -87 1364 187 128 8 chr4 3067729 3068171 -181220491 - MLT1H LTR MaLR -8 541 1 263 224 40 13 chr4 3068565 3068641 -181220021 + MLT1K LTR MaLR 448 525 -63 2052 97 20 17 chr4 3068748 3069047 -181219615 - AluSq SINE Alu -13 300 1 186 390 11 0 chr4 3069674 3069769 -181218893 + MIR SINE MIR 89 184 -78 315 196 9 103 chr4 3070011 3070118 -181218544 - MER53 DNA DNA 0 189 93 22 35 0 0 chr4 3070201 3070230 -181218432 + GC_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 3070766 3070787 -181217875 + GC_rich Low_complexity Low_complexity 1 21 0 1110 153 16 0 chr4 3071065 3071255 -181217407 - AluJb SINE Alu 0 312 120 2055 82 43 4 chr4 3072228 3072508 -181216154 + AluSc SINE Alu 14 304 -5 385 328 85 17 chr4 3072518 3072753 -181215909 + L1MC4 LINE L1 7699 7949 -93 310 211 0 0 chr4 3074778 3074830 -181213832 + MLT1C LTR MaLR 416 467 0 325 278 11 30 chr4 3074839 3074986 -181213676 + L1MC3 LINE L1 6207 7783 0 228 285 46 54 chr4 3075239 3075369 -181213293 + MIR SINE MIR 18 146 -62 1833 144 34 0 chr4 3076009 3076301 -181212361 + AluJo SINE Alu 1 302 -10 2264 85 3 0 chr4 3076433 3076728 -181211934 + AluSp SINE Alu 1 296 -17 626 198 0 9 chr4 3076732 3076838 -181211824 - FLAM_C SINE Alu -18 125 21 814 178 16 0 chr4 3076925 3077054 -181211608 + AluSq/x SINE Alu 2 132 -181 318 371 59 8 chr4 3077102 3077358 -181211304 + L1MC4 LINE L1 6768 7036 -1006 1795 139 42 0 chr4 3077555 3077721 -181210941 - AluSx SINE Alu -13 299 115 210 37 0 0 chr4 3077721 3077748 -181210914 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1795 139 42 0 chr4 3077748 3077868 -181210794 - AluSx SINE Alu -197 115 1 381 291 52 56 chr4 3077889 3078059 -181210603 + L1M4 LINE L1 5111 5280 -866 1505 175 73 0 chr4 3078059 3078333 -181210329 + AluJb SINE Alu 1 294 -18 2120 136 0 0 chr4 3078337 3078647 -181210015 + AluSx SINE Alu 1 310 -2 381 291 52 56 chr4 3078647 3078684 -181209978 + L1M4 LINE L1 5283 5322 -824 902 120 46 51 chr4 3078699 3078822 -181209840 + L1MA8 LINE L1 6116 6239 -52 2038 114 0 33 chr4 3078822 3078958 -181209704 + AluSx SINE Alu 1 140 -172 2055 127 0 16 chr4 3078958 3079272 -181209390 + AluSg1 SINE Alu 1 309 0 2038 114 0 33 chr4 3079272 3079442 -181209220 + AluSx SINE Alu 140 297 -15 902 120 46 51 chr4 3079442 3079493 -181209169 + L1MA8 LINE L1 6239 6289 -2 743 296 35 29 chr4 3079495 3079830 -181208832 + L1MC4a LINE L1 5256 5599 -844 260 305 149 15 chr4 3079976 3080176 -181208486 + L1MC4a LINE L1 5910 6156 -1652 2026 138 7 0 chr4 3080176 3080480 -181208182 - AluJb SINE Alu -6 306 1 260 305 149 15 chr4 3080480 3080548 -181208114 + L1MC4a LINE L1 6156 6214 -1594 317 324 20 7 chr4 3081280 3081428 -181207234 + (TCCA)n Simple_repeat Simple_repeat 3 152 0 205 188 0 42 chr4 3083399 3083447 -181205215 + C-rich Low_complexity Low_complexity 6 51 0 286 273 161 14 chr4 3084116 3084402 -181204260 + L2 LINE L2 2248 2575 -739 400 293 89 18 chr4 3084495 3084720 -181203942 + L2 LINE L2 2844 3084 -229 972 185 7 3 chr4 3085101 3085547 -181203115 + (TCCA)n Simple_repeat Simple_repeat 1 627 0 790 206 6 1 chr4 3085580 3086281 -181202381 + (TCCA)n Simple_repeat Simple_repeat 1 704 0 635 215 6 0 chr4 3086306 3086478 -181202184 + (TCCA)n Simple_repeat Simple_repeat 2 174 0 332 334 112 25 chr4 3086478 3086560 -181202102 - L2 LINE L2 0 3313 3239 2045 127 10 0 chr4 3086560 3086893 -181201769 + AluSx SINE Alu 1 312 0 332 334 112 25 chr4 3086893 3087124 -181201538 - L2 LINE L2 -74 3239 2973 275 279 38 13 chr4 3087231 3087310 -181201352 + MLT1K LTR MaLR 166 246 -342 285 268 89 18 chr4 3087387 3087499 -181201163 + MLT1K LTR MaLR 467 586 -2 1623 184 10 16 chr4 3091347 3091657 -181197005 - AluJb SINE Alu -2 310 3 1808 170 89 6 chr4 3091657 3092004 -181196658 + MSTB1 LTR MaLR 57 432 0 510 319 42 78 chr4 3092028 3092117 -181196545 + L1M4 LINE L1 4651 4742 -1404 1727 170 3 3 chr4 3092117 3092411 -181196251 + AluJo SINE Alu 1 294 -18 510 319 42 78 chr4 3092411 3092707 -181195955 + L1M4 LINE L1 4742 5022 -1124 1046 204 25 4 chr4 3093177 3093412 -181195250 + AluSx SINE Alu 61 300 -12 1378 130 51 16 chr4 3093412 3093665 -181194997 + L1MA5 LINE L1 6037 6298 -2 2209 78 0 7 chr4 3093724 3094017 -181194645 + AluSc SINE Alu 1 291 -18 664 165 51 173 chr4 3094017 3094271 -181194391 - L1ME LINE L1 -347 5819 5597 2000 109 3 7 chr4 3094273 3094557 -181194105 - AluSg SINE Alu -14 296 14 2259 76 3 3 chr4 3094557 3094858 -181193804 - AluY SINE Alu -10 301 1 1749 155 7 17 chr4 3094862 3095159 -181193503 - AluJb SINE Alu -7 305 12 603 199 99 53 chr4 3095172 3095454 -181193208 - L1ME LINE L1 -1446 4700 4406 400 305 104 11 chr4 3095711 3095990 -181192672 - L2 LINE L2 -466 2848 2544 2050 96 4 4 chr4 3096287 3096568 -181192094 + AluSx SINE Alu 1 281 -31 195 42 0 0 chr4 3096572 3096596 -181192066 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 301 250 21 31 chr4 3096596 3096678 -181191984 + L1M4 LINE L1 3793 3875 -2271 1517 187 3 23 chr4 3096678 3096977 -181191685 + AluSx SINE Alu 1 293 -19 301 250 21 31 chr4 3096977 3096990 -181191672 + L1M4 LINE L1 3875 3887 -2259 2009 84 7 7 chr4 3097696 3097971 -181190691 - AluSx SINE Alu -12 300 26 281 26 26 0 chr4 3097989 3098027 -181190635 + (TTA)n Simple_repeat Simple_repeat 2 40 0 1670 143 0 38 chr4 3098034 3098192 -181190470 - AluJo SINE Alu -36 276 132 2316 68 0 7 chr4 3098192 3098488 -181190174 + AluY SINE Alu 1 294 -17 818 152 0 0 chr4 3098491 3098616 -181190046 - AluJo/FLAM SINE Alu -187 125 1 2857 10 3 3 chr4 3098640 3098951 -181189711 + AluYa5 SINE Alu 1 311 0 775 69 20 0 chr4 3098960 3099062 -181189600 + AluSq/x SINE Alu 1 104 -208 208 106 21 43 chr4 3099223 3099270 -181189392 + (CCCG)n Simple_repeat Simple_repeat 2 47 0 2004 102 22 0 chr4 3100500 3100775 -181187887 + AluSp SINE Alu 13 293 -20 2283 79 3 22 chr4 3100777 3101092 -181187570 + AluY SINE Alu 1 309 -2 1914 99 106 4 chr4 3101108 3101381 -181187281 + AluSx SINE Alu 1 301 -11 609 174 31 68 chr4 3101381 3101542 -181187120 + L1MA5 LINE L1 5756 5910 -390 2065 116 10 13 chr4 3101549 3101860 -181186802 - AluSg SINE Alu 0 310 1 1490 113 32 0 chr4 3101998 3102219 -181186443 - AluSq SINE Alu -85 228 1 1699 91 0 13 chr4 3102221 3102400 -181186262 - AluY SINE Alu -1 310 133 2445 38 3 14 chr4 3102400 3102710 -181185952 - AluY SINE Alu 0 311 1 1699 91 0 13 chr4 3102710 3102761 -181185901 - AluY SINE Alu -178 133 83 2144 101 3 63 chr4 3102763 3103081 -181185581 - AluSq SINE Alu -14 299 1 1407 187 56 21 chr4 3103191 3103475 -181185187 + AluJo SINE Alu 1 294 -18 440 306 0 9 chr4 3103533 3103644 -181185018 + FLAM_A SINE Alu 5 114 -19 2078 129 3 13 chr4 3103705 3104014 -181184648 + AluSg SINE Alu 1 306 -4 2386 60 30 13 chr4 3104404 3104705 -181183957 + AluSx SINE Alu 1 306 -6 807 157 0 0 chr4 3105520 3105641 -181183021 + AluSg/x SINE Alu 172 292 -18 1710 156 10 27 chr4 3107382 3107677 -181180985 + AluJo SINE Alu 1 290 -22 2038 129 36 3 chr4 3107920 3108222 -181180440 + AluSx SINE Alu 1 312 0 937 186 12 0 chr4 3108652 3108813 -181179849 - FRAM SINE Alu -13 163 1 1295 209 104 71 chr4 3109521 3109939 -181178723 - Charlie7 DNA MER1_type -111 2501 2052 2562 51 0 29 chr4 3109939 3110254 -181178408 + AluY SINE Alu 1 306 -5 1295 209 104 71 chr4 3110254 3110487 -181178175 - Charlie7 DNA MER1_type -560 2052 1828 2155 95 14 3 chr4 3110487 3110770 -181177892 - AluSx SINE Alu -18 294 9 331 176 71 188 chr4 3110877 3110979 -181177683 + L1ME3A LINE L1 5053 5165 -981 2134 122 3 3 chr4 3110979 3111274 -181177388 - AluSp SINE Alu -18 295 1 331 176 71 188 chr4 3111274 3111294 -181177368 + L1ME3A LINE L1 5165 5153 -993 2026 134 0 10 chr4 3111294 3111592 -181177070 - AluSx SINE Alu -17 295 1 331 176 71 188 chr4 3111592 3111638 -181177024 + L1ME3A LINE L1 5152 5202 -944 1151 274 114 34 chr4 3111666 3112283 -181176379 + L1ME3A LINE L1 5290 5985 -185 2417 94 3 0 chr4 3112283 3112590 -181176072 - AluSc SINE Alu -1 308 1 1151 274 114 34 chr4 3112590 3112763 -181175899 + L1ME3A LINE L1 5985 6143 -27 1311 99 6 0 chr4 3112793 3112965 -181175697 - AluSg/x SINE Alu -14 298 126 931 234 80 7 chr4 3113005 3113291 -181175371 + L1M4 LINE L1 4872 5178 -968 314 328 133 9 chr4 3113313 3113636 -181175026 + L1MCc LINE L1 -485 4294967173 -6031 253 291 53 82 chr4 3113882 3113961 -181174701 + L1MCc LINE L1 295 375 -5533 2081 116 19 35 chr4 3113961 3114271 -181174391 + AluSq SINE Alu 1 305 -8 253 291 53 82 chr4 3114271 3114397 -181174265 + L1MCc LINE L1 375 494 -5414 352 223 142 7 chr4 3114543 3114691 -181173971 + L1MCc LINE L1 1306 1465 -4961 194 159 45 0 chr4 3114745 3114789 -181173873 + GA-rich Low_complexity Low_complexity 3 48 0 1496 158 85 12 chr4 3114813 3115072 -181173590 + AluJo SINE Alu 14 291 -21 533 291 46 37 chr4 3115087 3115282 -181173380 + L1MCc LINE L1 1654 1846 -4761 2099 110 9 31 chr4 3115282 3115600 -181173062 + AluY SINE Alu 1 311 0 533 291 46 37 chr4 3115600 3115680 -181172982 + L1MCc LINE L1 1846 1924 -4683 2114 123 13 7 chr4 3115680 3115989 -181172673 + AluSx SINE Alu 1 311 -1 533 291 46 37 chr4 3115989 3116062 -181172600 + L1MCc LINE L1 1924 2006 -4601 2431 54 3 3 chr4 3116080 3116374 -181172288 - AluY SINE Alu -4 307 14 1708 171 17 38 chr4 3116398 3116742 -181171920 - MSTB LTR MaLR -49 377 41 4491 101 14 75 chr4 3116742 3117501 -181171161 - L1PA12 LINE L1 -9 6159 5447 1896 181 0 3 chr4 3117515 3117818 -181170844 - AluJb SINE Alu -10 302 1 1356 69 0 29 chr4 3117847 3118022 -181170640 - AluSx SINE Alu -142 170 1 733 149 0 41 chr4 3118073 3118194 -181170468 + FLAM_C SINE Alu 2 117 -26 452 108 0 0 chr4 3118198 3118263 -181170399 + AluJ/FRAM SINE Alu 230 294 -8 * 2044 123 131 44 chr4 3118258 3118664 -181169998 + Tigger2 DNA MER2_type 2278 2718 0 487 283 26 58 chr4 3118694 3118885 -181169777 + MIR SINE MIR 75 259 -3 815 174 84 7 chr4 3119007 3119162 -181169500 + AluJb SINE Alu 140 306 -6 319 297 14 0 chr4 3119226 3119300 -181169362 + L2 LINE L2 3198 3272 0 2227 133 0 0 chr4 3119516 3119824 -181168838 + AluSx SINE Alu 1 308 -4 297 95 0 0 chr4 3120037 3120079 -181168583 + Alu SINE Alu 253 294 -6 372 311 45 8 chr4 3120379 3120511 -181168151 + MIR SINE MIR 92 228 -34 346 230 0 58 chr4 3120569 3120656 -181168006 + AluSg/x SINE Alu 136 217 -83 824 204 14 0 chr4 3120670 3120817 -181167845 - FAM SINE Alu -36 149 1 2080 106 0 11 chr4 3120840 3121146 -181167516 + AluSg SINE Alu 3 305 0 2383 90 3 0 chr4 3121471 3121770 -181166892 + AluSx SINE Alu 2 301 -11 26 64 0 0 chr4 3122428 3122475 -181166187 + AT_rich Low_complexity Low_complexity 1 47 0 294 315 207 9 chr4 3122605 3122818 -181165844 + L2 LINE L2 2109 2363 -951 599 275 174 12 chr4 3123069 3123446 -181165216 + L2 LINE L2 2628 3060 -253 1571 97 14 0 chr4 3123984 3124191 -181164471 - AluSc SINE Alu -91 218 9 2100 93 0 83 chr4 3124289 3124473 -181164189 - AluSx SINE Alu -15 297 150 2073 125 31 0 chr4 3124473 3124760 -181163902 - AluSg SINE Alu -14 296 1 2100 93 0 83 chr4 3124760 3124899 -181163763 - AluSx SINE Alu -162 150 1 2080 126 3 7 chr4 3125539 3125840 -181162822 - AluSc SINE Alu -9 300 1 782 148 0 87 chr4 3125872 3126021 -181162641 + AluJb SINE Alu 4 139 -173 2123 122 3 40 chr4 3126029 3126350 -181162312 + AluSq SINE Alu 1 309 -4 1378 219 7 49 chr4 3126737 3126875 -181161787 + AluJo SINE Alu 6 148 -164 2268 94 0 10 chr4 3126875 3127174 -181161488 + AluSg SINE Alu 1 296 -14 1378 219 7 49 chr4 3127174 3127341 -181161321 + AluJo SINE Alu 148 298 -14 2421 79 7 0 chr4 3127442 3127745 -181160917 - AluSx SINE Alu -7 305 1 677 246 102 29 chr4 3127773 3128086 -181160576 - L1ME3A LINE L1 -273 5897 5562 1449 189 10 69 chr4 3128146 3128320 -181160342 - AluJo SINE Alu -24 288 138 2351 92 0 0 chr4 3128320 3128612 -181160050 + AluSg SINE Alu 1 292 -18 1449 189 10 69 chr4 3128612 3128743 -181159919 - AluJo SINE Alu -174 138 1 2088 201 89 99 chr4 3128754 3129409 -181159253 - L1ME1 LINE L1 -44 6122 5462 949 211 131 65 chr4 3129409 3129558 -181159104 - AluJo SINE Alu -9 293 155 1957 120 10 24 chr4 3129558 3129876 -181158786 + AluSq SINE Alu 1 314 0 949 211 131 65 chr4 3129876 3130000 -181158662 - AluJo SINE Alu -147 155 1 2088 201 89 99 chr4 3130000 3130036 -181158626 - L1ME1 LINE L1 -704 5462 5427 321 68 0 0 chr4 3130036 3130080 -181158582 + (TG)n Simple_repeat Simple_repeat 2 45 0 2040 125 4 0 chr4 3130081 3130361 -181158301 - AluSx SINE Alu -17 295 15 2088 201 89 99 chr4 3130361 3130520 -181158142 - L1ME1 LINE L1 -739 5427 5268 2331 90 7 0 chr4 3130520 3130819 -181157843 - AluSq SINE Alu -12 301 1 2088 201 89 99 chr4 3130819 3130910 -181157752 - L1ME1 LINE L1 -898 5268 5178 1998 157 3 0 chr4 3130910 3131204 -181157458 - AluSx SINE Alu -17 295 1 2088 201 89 99 chr4 3131204 3131370 -181157292 - L1ME1 LINE L1 -988 5178 5024 2092 125 6 13 chr4 3131372 3131683 -181156979 - AluSx SINE Alu -1 311 3 429 214 12 89 chr4 3131694 3131832 -181156830 - L1ME3A LINE L1 -965 5181 5057 2856 16 3 0 chr4 3131832 3132142 -181156520 - AluYa5 SINE Alu 0 311 1 429 214 12 89 chr4 3132142 3132171 -181156491 - L1ME3A LINE L1 -1089 5057 5027 2172 133 0 3 chr4 3132171 3132473 -181156189 - AluSg SINE Alu -9 301 1 1851 169 0 28 chr4 3132473 3132792 -181155870 - AluSx SINE Alu -1 311 1 466 266 38 49 chr4 3132796 3132874 -181155788 - L1ME3A LINE L1 -2274 3872 3795 2258 89 4 0 chr4 3132874 3133179 -181155483 - AluSp SINE Alu 0 309 4 2266 85 3 10 chr4 3133183 3133533 -181155129 - AluY SINE Alu 0 311 14 466 266 38 49 chr4 3133533 3133663 -181154999 - L1ME3A LINE L1 -2354 3792 3659 1281 181 17 0 chr4 3133663 3133895 -181154767 - MER46A DNA MER2_type 0 236 1 466 266 38 49 chr4 3133895 3133946 -181154716 - L1ME3A LINE L1 -2487 3659 3609 2195 227 109 66 chr4 3133961 3134275 -181154387 - L1ME3A LINE L1 -2734 3412 3113 1760 172 0 35 chr4 3134275 3134455 -181154207 - AluJo SINE Alu -2 310 144 2592 56 0 0 chr4 3134455 3134757 -181153905 - AluY SINE Alu -9 302 1 1760 172 0 35 chr4 3134757 3134895 -181153767 - AluJo SINE Alu -168 144 3 2195 227 109 66 chr4 3134895 3134980 -181153682 - L1ME3A LINE L1 -3033 3113 3033 2313 68 4 0 chr4 3134980 3135283 -181153379 - AluY SINE Alu 0 304 1 1961 151 10 3 chr4 3135290 3135594 -181153068 - AluSx SINE Alu -6 306 1 2195 227 109 66 chr4 3135594 3135630 -181153032 - L1ME3A LINE L1 -3118 3028 2995 844 208 6 24 chr4 3135630 3135798 -181152864 + FAM SINE Alu 1 165 -10 2195 227 109 66 chr4 3135798 3135820 -181152842 - L1ME3A LINE L1 -3151 2995 2975 2283 83 3 0 chr4 3135820 3136108 -181152554 - AluSc SINE Alu -4 305 17 2195 227 109 66 chr4 3136108 3136140 -181152522 - L1ME3A LINE L1 -3171 2975 2946 2029 138 51 28 chr4 3136140 3136496 -181152166 + THE1B LTR MaLR 1 364 0 2195 227 109 66 chr4 3136496 3136528 -181152134 - L1ME3A LINE L1 -3200 2946 2917 2208 113 0 3 chr4 3136528 3136829 -181151833 - AluSg SINE Alu -10 300 1 2195 227 109 66 chr4 3136829 3137431 -181151231 - L1ME3A LINE L1 -3229 2917 2226 275 173 0 19 chr4 3137778 3137830 -181150832 + Alu SINE Alu 2 52 -247 1546 172 3 107 chr4 3137943 3138054 -181150608 + AluJb SINE Alu 2 123 -179 2268 83 10 0 chr4 3138054 3138344 -181150318 - AluY SINE Alu -3 308 16 2037 115 31 0 chr4 3138352 3138639 -181150023 - AluSq SINE Alu -17 296 1 1546 172 3 107 chr4 3138639 3138654 -181150008 + AluJb SINE Alu 130 145 -157 2251 89 10 3 chr4 3138654 3138947 -181149715 - AluSc SINE Alu -14 295 1 1546 172 3 107 chr4 3138947 3139136 -181149526 + AluJb SINE Alu 145 293 -9 390 92 0 0 chr4 3139357 3139422 -181149240 - L1MC3 LINE L1 0 7785 7721 1755 149 24 24 chr4 3139422 3139751 -181148911 - MER44D DNA MER2_type 0 609 11 790 181 99 45 chr4 3139776 3139997 -181148665 - L1MD3 LINE L1 -67 7928 7696 2335 92 0 7 chr4 3140114 3140408 -181148254 + AluSc SINE Alu 1 292 -17 2091 136 13 7 chr4 3140434 3140744 -181147918 + AluSx SINE Alu 1 312 0 1189 210 5 0 chr4 3140859 3141083 -181147579 - AluJo SINE Alu -46 266 42 2042 149 7 0 chr4 3141161 3141462 -181147200 + AluSx SINE Alu 1 303 -9 289 234 9 56 chr4 3141646 3141753 -181146909 - MIR3 SINE MIR -1 207 106 894 213 0 18 chr4 3141867 3142036 -181146626 - AluJ SINE Alu 0 302 137 2201 92 58 3 chr4 3142388 3142683 -181145979 - AluSq SINE Alu -2 311 1 825 140 0 37 chr4 3143257 3143393 -181145269 - AluJ SINE Alu -181 131 1 1977 150 3 7 chr4 3143623 3143923 -181144739 - AluSx SINE Alu -13 299 1 2386 96 0 0 chr4 3143934 3144237 -181144425 - AluSx SINE Alu -9 303 1 278 310 14 0 chr4 3144487 3144558 -181144104 + MIR3 SINE MIR 114 185 -23 1707 160 11 14 chr4 3144606 3144888 -181143774 + AluJo SINE Alu 1 281 -31 2195 99 3 3 chr4 3145065 3145359 -181143303 - AluSg SINE Alu -5 305 12 2443 91 3 0 chr4 3145374 3145681 -181142981 - AluSg SINE Alu -2 308 1 669 163 114 8 chr4 3145862 3145985 -181142677 + FLAM_C SINE Alu 3 138 -5 1100 251 122 15 chr4 3146009 3146420 -181142242 + Charlie7 DNA MER1_type 409 863 -1749 1756 155 33 16 chr4 3146518 3146821 -181141841 - AluJb SINE Alu -4 308 1 1563 203 128 91 chr4 3147060 3147234 -181141428 + Charlie7 DNA MER1_type 926 1092 -1520 1557 161 36 23 chr4 3147234 3147539 -181141123 - AluJo SINE Alu -3 309 1 1563 203 128 91 chr4 3147539 3147693 -181140969 + Charlie7 DNA MER1_type 1092 1239 -1373 2186 123 7 0 chr4 3147693 3147994 -181140668 - AluSc SINE Alu -6 303 1 1563 203 128 91 chr4 3147994 3148486 -181140176 + Charlie7 DNA MER1_type 1239 1777 -835 2428 69 0 26 chr4 3148490 3148793 -181139869 - AluY SINE Alu -16 295 1 2226 84 0 4 chr4 3148793 3149068 -181139594 - AluSg SINE Alu -10 300 27 2367 103 7 3 chr4 3149068 3149377 -181139285 - AluY SINE Alu 0 311 1 1013 222 23 82 chr4 3149377 3149430 -181139232 + L1 LINE L1 3535 3590 -2556 2138 142 0 0 chr4 3149430 3149733 -181138929 + AluSq SINE Alu 1 303 -10 2225 70 13 61 chr4 3149733 3150048 -181138614 + AluY SINE Alu 1 298 -13 1013 222 23 82 chr4 3150048 3150178 -181138484 + L1 LINE L1 3589 3725 -2421 2222 101 0 10 chr4 3150178 3150474 -181138188 + AluSq SINE Alu 1 293 -20 1013 222 23 82 chr4 3150474 3150603 -181138059 + L1 LINE L1 3725 3860 -2286 1816 118 0 99 chr4 3150603 3150935 -181137727 + AluSx SINE Alu 2 300 -12 1013 222 23 82 chr4 3150935 3151161 -181137501 + L1 LINE L1 3860 4242 -1904 2341 103 0 0 chr4 3151161 3151473 -181137189 + AluSx SINE Alu 1 312 0 656 223 47 63 chr4 3151536 3151664 -181136998 + L1 LINE L1 5174 5300 -846 2302 67 0 0 chr4 3151664 3151971 -181136691 + AluY SINE Alu 2 308 0 656 223 47 63 chr4 3151971 3152047 -181136615 + L1 LINE L1 5300 5376 -770 667 231 0 8 chr4 3152048 3152182 -181136480 + AluJb SINE Alu 171 303 -9 754 183 47 26 chr4 3152185 3152367 -181136295 + L1MB4 LINE L1 5959 6136 -47 693 206 15 0 chr4 3152367 3152498 -181136164 + AluJo/FLAM SINE Alu 1 133 -169 1938 106 4 4 chr4 3152498 3152773 -181135889 + AluSp SINE Alu 38 312 -1 1790 119 0 119 chr4 3152773 3153108 -181135554 + AluY SINE Alu 2 296 -5 2336 88 0 0 chr4 3153113 3153409 -181135253 + AluSq SINE Alu 1 296 -17 754 183 47 26 chr4 3153409 3153443 -181135219 + L1MB4 LINE L1 6139 6176 -7 1168 150 235 45 chr4 3153603 3153794 -181134868 - Tigger3b DNA MER2_type -2481 547 394 1420 188 70 27 chr4 3153794 3154092 -181134570 - AluJb SINE Alu -1 311 1 1168 150 235 45 chr4 3154092 3154138 -181134524 - Tigger3b DNA MER2_type -2634 394 358 2085 97 7 29 chr4 3154138 3154474 -181134188 + AluSq SINE Alu 1 329 0 1168 150 235 45 chr4 3154474 3154714 -181133948 - Tigger3b DNA MER2_type -2670 358 1 223 25 50 25 chr4 3154792 3154832 -181133830 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1319 109 0 0 chr4 3154839 3155014 -181133648 - AluSq SINE Alu -138 175 1 681 118 97 28 chr4 3155021 3155165 -181133497 - Tigger7 DNA MER2_type -27 2460 2307 2232 96 3 0 chr4 3155180 3155473 -181133189 - AluSg SINE Alu -15 295 2 528 148 0 0 chr4 3155495 3155576 -181133086 - FLAM SINE Alu -10 133 53 311 234 169 39 chr4 3155663 3155778 -181132884 - L1ME3A LINE L1 -300 5870 5771 2811 7 0 0 chr4 3155778 3156087 -181132575 + AluYb8 SINE Alu 1 309 -9 311 234 169 39 chr4 3156087 3156202 -181132460 - L1ME3A LINE L1 -399 5771 5610 * 705 231 77 10 chr4 3156201 3156398 -181132264 + L1 LINE L1 2831 3056 -3090 2412 55 0 3 chr4 3156398 3156691 -181131971 + AluY SINE Alu 1 292 -19 705 231 77 10 chr4 3156691 3156792 -181131870 + L1 LINE L1 3056 3149 -2997 2026 125 0 0 chr4 3156793 3157074 -181131588 + AluSx SINE Alu 1 281 -31 2312 99 0 0 chr4 3157089 3157391 -181131271 + AluSx SINE Alu 1 302 -10 2169 103 3 10 chr4 3157397 3157707 -181130955 + AluSp SINE Alu 6 313 0 2021 123 7 0 chr4 3157716 3158016 -181130646 + AluY SINE Alu 2 303 -8 552 242 114 14 chr4 3158019 3158238 -181130424 + L1 LINE L1 3299 3539 -2607 817 179 0 14 chr4 3159782 3159804 -181128858 - AluJo SINE Alu -174 138 117 306 0 0 0 chr4 3159804 3159838 -181128824 + (TG)n Simple_repeat Simple_repeat 2 35 0 817 179 0 14 chr4 3159838 3159955 -181128707 - AluJo SINE Alu -195 117 1 256 302 38 28 chr4 3162800 3162906 -181125756 + MIR SINE MIR 113 219 -43 305 290 57 8 chr4 3163327 3163451 -181125211 + MLT1J2 LTR MaLR 130 259 -191 210 351 84 30 chr4 3163562 3163693 -181124969 - MIR SINE MIR -106 156 19 1944 184 19 73 chr4 3164366 3164499 -181124163 + L1MB5 LINE L1 5680 5819 -355 2492 62 0 0 chr4 3164499 3164805 -181123857 + AluY SINE Alu 5 310 -1 1944 184 19 73 chr4 3164805 3165194 -181123468 + L1MB5 LINE L1 5819 6174 0 379 254 70 7 chr4 3166239 3166381 -181122281 + L1MEd LINE L1 454 604 -5926 300 286 51 46 chr4 3166828 3167018 -181121644 - MLT1H LTR MaLR -356 239 35 1982 85 12 0 chr4 3167404 3167662 -181121000 + AluSg SINE Alu 1 261 -49 284 319 58 21 chr4 3167924 3168115 -181120547 + HAL1 LINE L1 1516 1713 -794 367 369 83 23 chr4 3168340 3168719 -181119943 + L1MEd LINE L1 2316 2757 -3905 2213 116 0 0 chr4 3168899 3169200 -181119462 - AluSx SINE Alu -11 301 1 2282 106 3 3 chr4 3169212 3169524 -181119138 - AluSx SINE Alu 0 312 1 1025 152 0 39 chr4 3170257 3170435 -181118227 + FRAM SINE Alu 1 169 -7 1668 228 69 61 chr4 3170448 3170999 -181117663 - L1MB5 LINE L1 -13 6161 5603 2225 68 41 7 chr4 3170999 3171294 -181117368 - AluY SINE Alu -6 305 1 1668 228 69 61 chr4 3171294 3171335 -181117327 - L1MB5 LINE L1 -571 5603 5564 2117 123 0 13 chr4 3171338 3171647 -181117015 - AluSq SINE Alu -8 305 1 3142 86 35 5 chr4 3174381 3174812 -181113850 + MLT2A1 LTR ERVL 1 444 0 269 322 96 9 chr4 3175734 3175849 -181112813 - L2 LINE L2 -4 3309 3185 233 300 25 0 chr4 3175912 3175992 -181112670 - MLT1H LTR MaLR -388 161 80 295 323 158 29 chr4 3176734 3177050 -181111612 + L2 LINE L2 1552 1908 -1406 343 338 146 12 chr4 3177086 3177429 -181111233 + L2 LINE L2 2156 2544 -770 557 336 93 3 chr4 3177429 3177718 -181110944 + L1MD1 LINE L1 5687 6001 -241 * 1715 189 51 33 chr4 3177465 3177807 -181110855 + L1MB3 LINE L1 5741 6094 -89 2124 95 20 20 chr4 3177807 3178111 -181110551 - AluSx SINE Alu -8 304 1 1715 189 51 33 chr4 3178111 3178196 -181110466 + L1MB3 LINE L1 6094 6176 -7 455 271 12 66 chr4 3178268 3178434 -181110228 + L2 LINE L2 2617 2773 -541 351 233 33 0 chr4 3178705 3178795 -181109867 + MER20 DNA MER1_type 122 214 -5 206 239 0 0 chr4 3179791 3179837 -181108825 - L2 LINE L2 -19 3253 3208 1697 245 46 40 chr4 3180324 3180826 -181107836 + MLT1D LTR MaLR 1 505 0 303 240 21 0 chr4 3180963 3181059 -181107603 + L1ME3A LINE L1 5853 5950 -220 1544 128 4 0 chr4 3182498 3182724 -181105938 - AluSg/x SINE Alu -17 293 67 1393 94 0 62 chr4 3182731 3182940 -181105722 + AluSg/x SINE Alu 103 299 -13 1331 167 27 0 chr4 3182940 3183198 -181105464 + L1MB3 LINE L1 5919 6183 0 1393 94 0 62 chr4 3183198 3183212 -181105450 + AluSg/x SINE Alu 299 312 0 305 314 0 12 chr4 3183245 3183331 -181105331 + L1MEc LINE L1 1875 1959 -4437 1191 244 121 37 chr4 3184266 3184697 -181103965 - MLT1C LTR MaLR 0 467 1 26 0 0 0 chr4 3187587 3187613 -181101049 + GC_rich Low_complexity Low_complexity 1 26 0 1487 199 125 36 chr4 3187857 3188173 -181100489 - MSTC LTR MaLR 0 428 69 1983 129 0 0 chr4 3188173 3188467 -181100195 - AluSx SINE Alu -18 294 1 1487 199 125 36 chr4 3188467 3188542 -181100120 - MSTC LTR MaLR -359 69 2 266 324 14 0 chr4 3190871 3190945 -181097717 + Charlie2b DNA MER1_type 679 753 -2029 2387 107 11 22 chr4 3191139 3191495 -181097167 - THE1A LTR MaLR -1 354 3 11205 75 4 9 chr4 3191497 3191567 -181097095 - THE1A-int LTR MaLR 0 1580 1511 2681 93 6 0 chr4 3191567 3191920 -181096742 + THE1A LTR MaLR 1 355 0 11205 75 4 9 chr4 3191920 3192961 -181095701 - THE1A-int LTR MaLR -69 1511 478 2117 138 0 0 chr4 3192961 3193266 -181095396 + AluSx SINE Alu 1 305 -7 11205 75 4 9 chr4 3193266 3193742 -181094920 - THE1A-int LTR MaLR -1102 478 1 2540 97 17 3 chr4 3193742 3194092 -181094570 - THE1A LTR MaLR 0 355 1 993 276 64 60 chr4 3194130 3194662 -181094000 + Charlie2 DNA MER1_type 1886 2419 -443 1382 152 0 0 chr4 3194662 3194872 -181093790 + AluSg/x SINE Alu 83 292 -20 461 277 101 55 chr4 3194876 3195241 -181093421 + Charlie2 DNA MER1_type 2404 2785 -77 261 281 76 49 chr4 3196054 3196239 -181092423 + L1MEd LINE L1 1068 1257 -4862 1243 174 45 74 chr4 3196265 3196312 -181092350 + MER7A DNA MER2_type 35 82 -2956 2084 131 0 3 chr4 3196312 3196610 -181092052 - AluSx SINE Alu -15 297 1 1243 174 45 74 chr4 3196610 3196872 -181091790 + MER7A DNA MER2_type 82 333 -13 262 384 57 11 chr4 3196883 3197146 -181091516 + HAL1 LINE L1 1376 1650 -857 744 239 119 0 chr4 3198737 3198988 -181089674 + L1MB3 LINE L1 5895 6175 -8 228 86 0 0 chr4 3199223 3199258 -181089404 + (TA)n Simple_repeat Simple_repeat 2 36 0 636 125 158 33 chr4 3199260 3199380 -181089282 - AluJb SINE Alu -11 301 167 1230 186 19 0 chr4 3199499 3199714 -181088948 - AluJb SINE Alu -93 219 1 2201 95 3 16 chr4 3200027 3200342 -181088320 - AluSx SINE Alu -1 311 1 208 286 18 0 chr4 3200392 3200448 -181088214 + MIR SINE MIR 89 145 -63 480 320 90 48 chr4 3200926 3201238 -181087424 + L2 LINE L2 2067 2391 -923 343 284 0 71 chr4 3201317 3201472 -181087190 + L2 LINE L2 2627 2770 -544 602 302 61 63 chr4 3202970 3203381 -181085281 + MLT1J LTR MaLR 101 510 -1 768 190 135 6 chr4 3203455 3203618 -181085044 + AluSg/x SINE Alu 116 299 -11 373 363 73 12 chr4 3203624 3203883 -181084779 + L1MC/D LINE L1 5445 5719 -2089 299 160 35 128 chr4 3203886 3203975 -181084687 - MLT1C LTR MaLR -353 114 18 2347 68 0 3 chr4 3203975 3204269 -181084393 - AluY SINE Alu -18 293 1 1826 168 3 7 chr4 3204273 3204565 -181084097 - AluJo SINE Alu -21 291 1 647 197 15 38 chr4 3204567 3204699 -181083963 - FLAM_A SINE Alu -4 129 1 299 160 35 128 chr4 3204699 3204743 -181083919 - MLT1C LTR MaLR -453 14 1 2545 61 0 0 chr4 3205465 3205775 -181082887 + AluY SINE Alu 1 310 -1 365 268 101 0 chr4 3206158 3206296 -181082366 - L2 LINE L2 -318 2995 2844 * 392 312 211 19 chr4 3206282 3207110 -181081552 - L2 LINE L2 -788 2526 1540 755 276 174 2 chr4 3210055 3210508 -181078154 + HAL1 LINE L1 841 1371 -1136 1521 139 21 107 chr4 3210882 3211219 -181077443 - AluYb8 SINE Alu -10 308 1 180 111 0 0 chr4 3212069 3212096 -181076566 + (CGGTG)n Simple_repeat Simple_repeat 3 29 0 871 225 11 6 chr4 3212362 3212540 -181076122 + AluJo SINE Alu 113 291 -21 1388 130 57 57 chr4 3213299 3213561 -181075101 - AluJo SINE Alu -15 297 36 2238 84 20 0 chr4 3213707 3214005 -181074657 + AluSx SINE Alu 1 304 -8 1328 277 102 17 chr4 3214256 3214725 -181073937 + MLT1J LTR MaLR 2 510 -1 1616 271 88 18 chr4 3214904 3215575 -181073087 - L2 LINE L2 -905 2409 1692 45 75 0 22 chr4 3216549 3216683 -181071979 + GC_rich Low_complexity Low_complexity 1 131 0 21 57 0 0 chr4 3217878 3217913 -181070749 + GC_rich Low_complexity Low_complexity 1 35 0 808 163 0 15 chr4 3219858 3219875 -181068787 - FLAM_C SINE Alu -179 133 117 252 0 0 0 chr4 3219875 3219903 -181068759 + (TG)n Simple_repeat Simple_repeat 2 29 0 808 163 0 15 chr4 3219903 3220020 -181068642 - FLAM_C SINE Alu -195 117 1 233 265 59 0 chr4 3222865 3222933 -181065729 + MIR SINE MIR 113 184 -78 388 155 0 0 chr4 3272944 3273002 -181015660 - AluS SINE Alu -241 62 5 2169 92 14 7 chr4 3273161 3273476 -181015186 - AluSq SINE Alu 0 317 1 2229 73 49 0 chr4 3274383 3274670 -181013992 + AluY SINE Alu 1 301 -10 180 143 0 0 chr4 3274732 3274774 -181013888 + (T)n Simple_repeat Simple_repeat 1 42 0 505 135 0 0 chr4 3275306 3275380 -181013282 + FLAM_A SINE Alu 53 126 -16 1384 231 87 9 chr4 3275502 3275836 -181012826 - MLT1E LTR MaLR -8 585 226 606 263 44 12 chr4 3275862 3276022 -181012640 - MLT1E LTR MaLR -428 165 1 473 290 126 31 chr4 3276681 3277015 -181011647 + MLT1J LTR MaLR 38 440 -71 1783 150 46 4 chr4 3277017 3277297 -181011365 - AluJo SINE Alu -17 295 4 21 36 0 0 chr4 3277307 3277335 -181011327 + AT_rich Low_complexity Low_complexity 1 28 0 1968 121 4 0 chr4 3277438 3277710 -181010952 - AluSx SINE Alu -3 309 37 201 133 0 0 chr4 3277732 3277762 -181010900 + (CATA)n Simple_repeat Simple_repeat 3 32 0 22 70 0 0 chr4 3277857 3277900 -181010762 + AT_rich Low_complexity Low_complexity 1 43 0 6187 120 36 106 chr4 3277908 3278054 -181010608 + Tigger3b DNA MER2_type 2 157 -2871 2264 104 3 3 chr4 3278054 3278351 -181010311 - AluSq SINE Alu -16 297 1 6187 120 36 106 chr4 3278351 3279440 -181009222 + Tigger3b DNA MER2_type 157 1145 -1883 2076 156 3 9 chr4 3279440 3279779 -181008883 - MER1B DNA MER1_type 0 337 1 6187 120 36 106 chr4 3279779 3279841 -181008821 + Tigger3b DNA MER2_type 1145 1210 -21 232 208 194 14 chr4 3279960 3280032 -181008630 + LTR16A LTR ERVL 366 450 0 1014 250 122 22 chr4 3280032 3280392 -181008270 + HERV16 LTR ERVL 1 396 -4600 811 167 204 52 chr4 3280477 3280746 -181007916 - AluJb SINE Alu -2 310 1 2344 91 66 43 chr4 3280906 3281145 -181007517 - MER4A LTR ERV1 0 664 411 1983 146 7 0 chr4 3281145 3281440 -181007222 + AluSx SINE Alu 1 297 -15 2344 91 66 43 chr4 3281440 3281595 -181007067 - MER4A LTR ERV1 -253 411 261 640 110 0 20 chr4 3281601 3281701 -181006961 - MER4A LTR ERV1 -566 98 1 839 173 39 19 chr4 3281713 3281869 -181006793 + AluJb SINE Alu 129 287 -25 32 0 0 0 chr4 3281869 3281901 -181006761 + AT_rich Low_complexity Low_complexity 1 32 0 559 246 186 80 chr4 3282266 3282954 -181005708 - LTR41 LTR ERVL -12 761 1 2152 228 66 12 chr4 3282954 3283545 -181005117 + HERV16 LTR ERVL 829 1451 -3545 2325 253 110 21 chr4 3283565 3284311 -181004351 + HERV16 LTR ERVL 1758 2569 -2427 627 263 100 11 chr4 3284371 3284561 -181004101 + HERV16 LTR ERVL 2721 2927 -2069 2241 85 7 43 chr4 3284564 3284869 -181003793 - AluSp SINE Alu -19 294 1 657 191 32 8 chr4 3284872 3284998 -181003664 - FLAM_A SINE Alu -1 141 13 873 317 117 15 chr4 3285170 3285690 -181002972 + HERV16 LTR ERVL 3116 3688 -2076 526 264 59 42 chr4 3285707 3285946 -181002716 + HERV16 LTR ERVL 3421 3663 -1333 1024 335 113 25 chr4 3286009 3286948 -181001714 + HERV16 LTR ERVL 4082 5103 -661 539 284 105 4 chr4 3287382 3287611 -181001051 + LTR16A LTR ERVL 102 353 -97 295 315 64 34 chr4 3287740 3288007 -181000655 - L1ME LINE L1 -239 5882 5605 393 176 0 0 chr4 3288085 3288159 -181000503 + (TA)n Simple_repeat Simple_repeat 1 74 0 325 314 38 9 chr4 3288290 3288395 -181000267 - L1ME LINE L1 -2191 5617 5510 252 286 8 17 chr4 3288455 3288574 -181000088 - L1P LINE L1 -785 5361 5244 2250 112 0 0 chr4 3288770 3289065 -180999597 - AluSx SINE Alu -17 295 1 25 0 0 0 chr4 3289097 3289122 -180999540 + AT_rich Low_complexity Low_complexity 1 25 0 379 278 65 12 chr4 3289191 3289360 -180999302 - L1ME LINE L1 -1627 4519 4342 371 240 0 0 chr4 3289374 3289449 -180999213 + MIR SINE MIR 4 78 -184 261 342 68 8 chr4 3290009 3290126 -180998536 - L2 LINE L2 0 3313 3190 191 292 0 56 chr4 3290255 3290327 -180998335 - L2 LINE L2 -217 3055 2988 1844 147 0 41 chr4 3290333 3290652 -180998010 + AluJo SINE Alu 1 306 -6 296 211 18 0 chr4 3290848 3290905 -180997757 + MIR SINE MIR 8 65 -197 483 179 0 0 chr4 3291177 3291280 -180997382 - AluJb SINE Alu 0 312 209 1492 138 0 5 chr4 3291313 3291523 -180997139 - AluJb SINE Alu -101 211 3 1313 202 102 76 chr4 3291530 3291718 -180996944 - Charlie2 DNA MER1_type -50 2812 2630 450 0 0 0 chr4 3291718 3291768 -180996894 + (TTA)n Simple_repeat Simple_repeat 2 51 0 2125 104 7 0 chr4 3291770 3292048 -180996614 - AluSx SINE Alu -30 282 3 378 0 0 0 chr4 3292053 3292095 -180996567 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 2099 111 14 0 chr4 3292098 3292378 -180996284 - AluSg SINE Alu -26 284 1 1841 157 7 14 chr4 3292380 3292719 -180995943 - AluJb SINE Alu 0 312 1 1313 202 102 76 chr4 3292719 3292991 -180995671 - Charlie2 DNA MER1_type -236 2626 2362 212 75 0 25 chr4 3292991 3293031 -180995631 + (TA)n Simple_repeat Simple_repeat 2 40 0 1313 202 102 76 chr4 3293031 3293054 -180995608 - Charlie2 DNA MER1_type -500 2362 2341 2012 161 0 0 chr4 3293054 3293364 -180995298 + AluJb SINE Alu 1 310 -2 1313 202 102 76 chr4 3293364 3293490 -180995172 - Charlie2 DNA MER1_type -521 2341 2169 2317 109 3 0 chr4 3293514 3293816 -180994846 - AluSg SINE Alu -7 303 1 2178 117 7 0 chr4 3294018 3294308 -180994354 - AluSq SINE Alu -21 292 1 1718 159 66 3 chr4 3295184 3295610 -180993052 - L1M4 LINE L1 -587 5597 5149 307 66 0 66 chr4 3295631 3295692 -180992970 + (TTTCC)n Simple_repeat Simple_repeat 1 57 0 14974 185 35 17 chr4 3295692 3297122 -180991540 - L1PB1 LINE L1 -85 6782 5379 2364 96 0 7 chr4 3297122 3297423 -180991239 - AluSg SINE Alu -11 299 1 14974 185 35 17 chr4 3297423 3298881 -180989781 - L1PB1 LINE L1 -1488 5379 3948 2337 94 7 3 chr4 3298881 3299188 -180989474 - AluSq SINE Alu -4 309 2 14974 185 35 17 chr4 3299188 3299421 -180989241 - L1PB1 LINE L1 -2919 3948 3721 2235 115 0 3 chr4 3299421 3299717 -180988945 - AluSc SINE Alu -14 295 1 14974 185 35 17 chr4 3299717 3300263 -180988399 - L1PB1 LINE L1 -3146 3721 3186 2270 114 0 0 chr4 3300263 3300562 -180988100 - AluSx SINE Alu 0 312 14 14974 185 35 17 chr4 3300562 3300872 -180987790 - L1PB1 LINE L1 -3681 3186 2883 194 0 39 0 chr4 3300872 3300898 -180987764 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 14974 185 35 17 chr4 3300898 3301713 -180986949 - L1PB1 LINE L1 -3984 2883 1876 2332 88 0 38 chr4 3301713 3302032 -180986630 - AluSc SINE Alu -2 307 1 14974 185 35 17 chr4 3302032 3302526 -180986136 - L1PB1 LINE L1 -4991 1876 1392 940 202 21 0 chr4 3302523 3302711 -180985951 - L1PB1 LINE L1 -6666 197 6 * 1159 175 62 22 chr4 3302728 3303002 -180985660 - L1M4 LINE L1 -1384 4762 4478 209 262 0 0 chr4 3305487 3305529 -180983133 + (TCCG)n Simple_repeat Simple_repeat 2 43 0 228 292 0 0 chr4 3305713 3305778 -180982884 + (CA)n Simple_repeat Simple_repeat 1 65 0 770 74 11 63 chr4 3311521 3311710 -180976952 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 260 260 164 10 chr4 3312297 3312401 -180976261 + LTR37B LTR ERV1 197 316 -152 2304 51 34 3 chr4 3312516 3312759 -180975903 - AluSg SINE Alu -9 301 46 180 0 0 0 chr4 3312759 3312779 -180975883 + (C)n Simple_repeat Simple_repeat 1 20 0 2304 51 34 3 chr4 3312779 3312827 -180975835 - AluSg SINE Alu -264 46 1 287 204 0 84 chr4 3313169 3313311 -180975351 + (CCCCG)n Simple_repeat Simple_repeat 4 133 0 214 218 18 0 chr4 3317122 3317177 -180971485 + T-rich Low_complexity Low_complexity 5 60 0 326 253 91 0 chr4 3317630 3317729 -180970933 + MER91C DNA MER1_type 33 140 0 261 271 75 45 chr4 3317866 3317999 -180970663 - MIR SINE MIR -44 218 82 254 120 53 40 chr4 3318068 3318143 -180970519 + CT-rich Low_complexity Low_complexity 1 76 0 1465 201 45 17 chr4 3318144 3318433 -180970229 - AluJo SINE Alu -3 309 13 267 54 0 0 chr4 3318705 3318742 -180969920 + (TTA)n Simple_repeat Simple_repeat 2 38 0 1972 105 7 18 chr4 3318744 3319029 -180969633 - AluSx SINE Alu -30 282 1 306 373 67 34 chr4 3319650 3319918 -180968744 - L1MCa LINE L1 -4174 2252 1976 378 233 27 73 chr4 3319950 3320169 -180968493 - L1ME1 LINE L1 -262 5904 5696 528 116 67 37 chr4 3320172 3320292 -180968370 - L1M3 LINE L1 -626 5554 5429 659 261 28 138 chr4 3320312 3320422 -180968240 - L1M4 LINE L1 -3549 2597 2476 2226 95 0 0 chr4 3320422 3320716 -180967946 + AluSg SINE Alu 1 294 -16 659 261 28 138 chr4 3320716 3321005 -180967657 - L1M4 LINE L1 -3670 2476 2238 638 316 85 62 chr4 3321397 3321751 -180966911 - L1ME4a LINE L1 -239 5882 5521 978 217 99 15 chr4 3321756 3322088 -180966574 - HsTC2 DNA Tc2 -17 1881 1522 388 221 19 10 chr4 3322090 3322194 -180966468 - HsTC2 DNA Tc2 -1793 105 1 356 296 66 13 chr4 3322527 3322679 -180965983 - MER5A DNA MER1_type -1 188 29 237 232 274 0 chr4 3323085 3323180 -180965482 + L2 LINE L2 3193 3313 0 25 0 0 0 chr4 3323370 3323395 -180965267 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 3323413 3323435 -180965227 + AT_rich Low_complexity Low_complexity 1 22 0 3494 202 33 69 chr4 3323625 3323849 -180964813 - L1MB7 LINE L1 -61 6123 5892 2373 57 10 7 chr4 3323849 3324147 -180964515 - AluY SINE Alu -12 299 1 3494 202 33 69 chr4 3324147 3324197 -180964465 - L1MB7 LINE L1 -292 5892 5842 1965 106 7 0 chr4 3324197 3324472 -180964190 - AluSx SINE Alu -12 300 24 3494 202 33 69 chr4 3324472 3325159 -180963503 - L1MB7 LINE L1 -342 5842 5131 1584 133 0 4 chr4 3325159 3325392 -180963270 + AluJb SINE Alu 3 234 -78 3494 202 33 69 chr4 3325392 3326130 -180962532 - L1MB7 LINE L1 -1053 5131 4316 2264 91 3 3 chr4 3326137 3326446 -180962216 - AluSx SINE Alu -2 310 2 363 222 0 0 chr4 3326450 3326531 -180962131 - L1MB7 LINE L1 0 6184 6104 1961 229 50 12 chr4 3326654 3327169 -180961493 - L1MB3 LINE L1 -2 6181 5647 271 266 112 21 chr4 3327186 3327329 -180961333 + HAL1 LINE L1 538 693 -1814 284 222 25 25 chr4 3327900 3327981 -180960681 - L1MB3 LINE L1 -572 5590 5510 335 361 100 11 chr4 3327990 3328170 -180960492 + HAL1 LINE L1 822 1017 -1490 291 206 28 19 chr4 3328183 3328290 -180960372 + HAL1 LINE L1 1069 1176 -1331 637 275 117 43 chr4 3328633 3329048 -180959614 - MLT1D LTR MaLR 0 467 22 189 264 0 0 chr4 3331054 3331126 -180957536 + (CA)n Simple_repeat Simple_repeat 1 72 0 296 276 13 0 chr4 3335000 3335076 -180953586 + MER81 DNA DNA 2 78 -36 205 290 116 0 chr4 3335349 3335418 -180953244 - MIR SINE MIR -79 183 107 192 338 44 22 chr4 3337251 3337387 -180951275 - L3 LINE CR1 -103 1474 1336 * 291 269 47 32 chr4 3337380 3337541 -180951121 - MIR SINE MIR -12 250 89 2162 60 53 3 chr4 3340215 3340500 -180948162 + AluSc SINE Alu 1 299 -10 28 29 0 0 chr4 3341009 3341044 -180947618 + GC_rich Low_complexity Low_complexity 1 35 0 201 238 16 16 chr4 3341381 3341444 -180947218 + (CCCGG)n Simple_repeat Simple_repeat 3 65 0 48 72 0 0 chr4 3341564 3341661 -180947001 + GC_rich Low_complexity Low_complexity 1 97 0 34 42 0 0 chr4 3341749 3341797 -180946865 + GC_rich Low_complexity Low_complexity 1 48 0 204 184 41 0 chr4 3341926 3341975 -180946687 + C-rich Low_complexity Low_complexity 4 54 0 40 87 0 0 chr4 3342000 3342103 -180946559 + GC_rich Low_complexity Low_complexity 1 103 0 24 67 0 0 chr4 3342169 3342214 -180946448 + GC_rich Low_complexity Low_complexity 1 45 0 334 311 67 8 chr4 3343228 3343347 -180945315 - MIR SINE MIR -43 219 94 217 189 167 33 chr4 3345825 3345915 -180942747 - L2 LINE L2 -38 3234 3133 412 330 60 47 chr4 3348931 3349104 -180939558 - L1 LINE L1 -802 5344 5172 429 301 102 62 chr4 3349104 3349360 -180939302 - L1ME4a LINE L1 -1 6120 5127 335 299 11 0 chr4 3349364 3349451 -180939211 + L1ME4a LINE L1 5983 6070 -51 455 247 0 46 chr4 3553248 3553623 -180735039 + CT-rich Low_complexity Low_complexity 1 357 0 312 27 0 0 chr4 3554691 3554728 -180733934 + (CA)n Simple_repeat Simple_repeat 2 38 0 235 254 0 0 chr4 3555592 3555647 -180733015 + L2 LINE L2 3200 3254 -18 1823 191 91 7 chr4 3556196 3556625 -180732037 + L1MB3 LINE L1 5715 6179 -4 202 260 77 39 chr4 3557074 3557178 -180731484 - MER5A DNA MER1_type -75 114 7 542 325 86 53 chr4 3557631 3558274 -180730388 - L1MC4 LINE L1 -1 8041 7378 420 176 35 7 chr4 3558564 3558706 -180729956 + (TCTA)n Simple_repeat Simple_repeat 2 147 0 987 235 20 24 chr4 3558772 3559066 -180729596 - L1MC4 LINE L1 -978 7064 6772 252 0 0 0 chr4 3559239 3559267 -180729395 + (CA)n Simple_repeat Simple_repeat 2 29 0 433 333 165 2 chr4 3559876 3560276 -180728386 - L1MC4a LINE L1 -1492 6316 5852 * 740 244 14 14 chr4 3560267 3560480 -180728182 + L1MC/D LINE L1 5302 5514 -2294 371 302 74 18 chr4 3560513 3560900 -180727762 - L1MC4a LINE L1 -840 5306 4909 330 361 104 17 chr4 3561102 3561332 -180727330 - L1MC4a LINE L1 -1475 4671 4422 331 276 57 0 chr4 3561425 3561548 -180727114 + LTR33 LTR ERVL 84 213 -308 493 270 23 23 chr4 3562242 3562416 -180726246 + MLT1K LTR MaLR 394 567 -21 353 321 18 0 chr4 3562798 3562907 -180725755 - MIR SINE MIR -71 191 81 343 151 82 0 chr4 3563251 3563324 -180725338 + MLT1H LTR MaLR 471 549 0 1040 276 32 34 chr4 3563697 3564077 -180724585 + MLT1E2 LTR MaLR 1 379 -247 402 57 0 0 chr4 3564126 3564179 -180724483 + (TG)n Simple_repeat Simple_repeat 1 53 0 977 220 73 32 chr4 3564180 3564493 -180724169 - MLT2D LTR ERVL -84 330 5 614 302 22 0 chr4 3564494 3564719 -180723943 + MLT1E2 LTR MaLR 380 609 -17 181 292 167 8 chr4 3565262 3565382 -180723280 - MIR3 SINE MIR -58 150 12 2116 202 42 13 chr4 3566602 3567053 -180721609 - MLT1C LTR MaLR -2 465 2 2301 68 0 7 chr4 3567330 3567661 -180721001 + AluY SINE Alu 1 329 0 190 381 38 19 chr4 3567981 3568141 -180720521 + L2 LINE L2 2588 2750 -564 771 341 156 21 chr4 3568795 3569270 -180719392 + HAL1 LINE L1 959 1497 -1010 1196 88 13 0 chr4 3569270 3569429 -180719233 - AluSc SINE Alu -19 290 130 705 295 129 3 chr4 3569440 3569772 -180718890 + HAL1 LINE L1 1506 1879 -628 1643 118 141 0 chr4 3570004 3570267 -180718395 + AluJo SINE Alu 1 300 -12 239 246 16 0 chr4 3570570 3570631 -180718031 + L2 LINE L2 3182 3243 -70 653 288 40 0 chr4 3573115 3573313 -180715349 - MIR SINE MIR -56 206 1 1055 80 0 0 chr4 3574722 3574860 -180713802 - MER85 DNA T2_type -1 138 1 391 99 25 86 chr4 3575297 3575378 -180713284 - L1MC1 LINE L1 -18 6315 6240 389 188 16 83 chr4 3575395 3575587 -180713075 + C-rich Low_complexity Low_complexity 2 180 0 252 153 38 99 chr4 3575607 3575738 -180712924 + C-rich Low_complexity Low_complexity 4 126 0 2556 27 0 0 chr4 3578274 3578571 -180710091 + AluY SINE Alu 1 297 -14 834 164 0 16 chr4 3579570 3579753 -180708909 + CT-rich Low_complexity Low_complexity 1 180 0 * 864 141 0 27 chr4 3579747 3579932 -180708730 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 772 151 0 27 chr4 3579947 3580132 -180708530 + CT-rich Low_complexity Low_complexity 1 180 0 456 294 47 41 chr4 3580350 3580520 -180708142 + MIR SINE MIR 2 172 -90 192 354 18 26 chr4 3580988 3581101 -180707561 + MIR SINE MIR 27 138 -124 280 338 66 15 chr4 3581632 3581768 -180706894 - MIR SINE MIR -13 249 107 186 222 0 0 chr4 3582656 3582710 -180705952 + CT-rich Low_complexity Low_complexity 4 57 0 263 223 62 108 chr4 3583111 3583241 -180705421 + MLT1H LTR MaLR 421 532 -17 374 236 39 34 chr4 3583732 3583910 -180704752 + (CCCA)n Simple_repeat Simple_repeat 1 179 0 293 347 48 8 chr4 3584183 3584307 -180704355 - MER5A DNA MER1_type 0 189 61 254 408 25 0 chr4 3586554 3586750 -180701912 - L1MC/D LINE L1 -1911 5897 5697 525 293 118 84 chr4 3586893 3588529 -180700133 + HAL1 LINE L1 816 2507 0 378 301 55 7 chr4 3588891 3589037 -180699625 + L2 LINE L2 2925 3077 -195 430 257 133 9 chr4 3589679 3589956 -180698706 - MLT1C LTR MaLR -44 346 47 275 152 0 15 chr4 3591211 3591277 -180697385 + (CA)n Simple_repeat Simple_repeat 1 65 0 709 153 9 18 chr4 3591292 3591620 -180697042 + (CA)n Simple_repeat Simple_repeat 1 324 0 602 172 0 32 chr4 3591643 3591829 -180696833 + (CA)n Simple_repeat Simple_repeat 1 180 0 541 178 11 17 chr4 3591845 3592025 -180696637 + (CA)n Simple_repeat Simple_repeat 1 179 0 1616 226 106 47 chr4 3592314 3592804 -180695858 + MLT2B1 LTR ERVL 2 520 0 354 301 0 35 chr4 3592959 3593072 -180695590 - MIR SINE MIR -141 121 13 1143 265 60 34 chr4 3593332 3593717 -180694945 - MLT2C1 LTR ERVL 0 397 3 233 343 86 14 chr4 3593717 3593848 -180694814 + MIR3 SINE MIR 7 150 -58 324 292 26 39 chr4 3594553 3594707 -180693955 - L2 LINE L2 0 3272 3121 298 309 0 19 chr4 3595899 3596017 -180692645 - MIR SINE MIR -87 121 33 212 235 59 0 chr4 3596628 3596696 -180691966 + L2 LINE L2 3197 3268 -4 180 217 0 0 chr4 3597094 3597140 -180691522 + (TGGG)n Simple_repeat Simple_repeat 4 49 0 243 0 0 0 chr4 3597192 3597219 -180691443 + (TGGA)n Simple_repeat Simple_repeat 1 27 0 197 200 0 0 chr4 3598962 3599002 -180689660 - MIR SINE MIR -62 146 107 210 342 141 38 chr4 3600153 3600472 -180688190 - L2 LINE L2 -29 3284 2933 264 233 155 39 chr4 3600686 3600789 -180687873 - L2 LINE L2 -2521 793 679 243 302 123 12 chr4 3601333 3601516 -180687146 + MIR SINE MIR 13 207 -38 381 302 71 28 chr4 3601524 3601706 -180686956 - MIR SINE MIR -3 259 70 442 223 10 10 chr4 3601982 3602085 -180686577 + MER81 DNA DNA 12 114 0 467 307 67 21 chr4 3602953 3603191 -180685471 - L1MC2 LINE L1 -9 6335 6087 281 276 66 4 chr4 3603709 3603812 -180684850 - MIR SINE MIR -60 148 43 225 208 0 31 chr4 3605541 3605637 -180683025 + (CAATT)n Simple_repeat Simple_repeat 2 94 0 202 310 17 0 chr4 3605735 3605793 -180682869 + (CCCG)n Simple_repeat Simple_repeat 1 59 0 516 161 12 43 chr4 3605855 3606017 -180682645 + C-rich Low_complexity Low_complexity 5 161 0 180 0 0 0 chr4 3606054 3606074 -180682588 + (CAG)n Simple_repeat Simple_repeat 1 20 0 273 307 50 28 chr4 3606914 3607093 -180681569 - L1ME4a LINE L1 -1 6120 5938 893 233 76 76 chr4 3607276 3607723 -180680939 + MLT1C LTR MaLR 3 449 -18 1716 184 0 28 chr4 3607948 3608268 -180680394 - AluJb SINE Alu -1 311 1 258 267 120 0 chr4 3608272 3608347 -180680315 - MIR SINE MIR -18 244 161 724 332 47 32 chr4 3608489 3608932 -180679730 + L2 LINE L2 713 1162 -2152 420 305 35 6 chr4 3608936 3609110 -180679552 + L1ME2 LINE L1 3257 3435 -2711 * 3550 179 159 90 chr4 3609108 3609780 -180678882 + L1MC3 LINE L1 6398 7022 -763 229 322 23 0 chr4 3609780 3609867 -180678795 + MLT1F1 LTR MaLR 37 125 -442 3550 179 159 90 chr4 3609867 3610403 -180678259 + L1MC3 LINE L1 7022 7782 -3 * 3843 255 113 40 chr4 3610384 3612434 -180676228 + L1ME2 LINE L1 3443 5722 -442 2162 136 146 11 chr4 3612434 3612810 -180675852 + MSTA LTR MaLR 2 428 0 3843 255 113 40 chr4 3612810 3613287 -180675375 + L1ME2 LINE L1 5722 6163 -1 470 294 76 34 chr4 3613327 3613565 -180675097 + L2 LINE L2 3066 3313 0 353 343 62 21 chr4 3613568 3614037 -180674625 + L1MC/D LINE L1 4691 5178 -968 287 288 47 26 chr4 3614157 3614528 -180674134 + L1MC/D LINE L1 5177 5563 -601 388 344 60 14 chr4 3615363 3615581 -180673081 + MIR SINE MIR 13 240 -22 212 320 102 15 chr4 3616078 3616284 -180672378 + L2 LINE L2 2454 2677 -637 971 247 160 9 chr4 3616796 3617140 -180671522 - MSTD LTR MaLR 0 396 1 355 273 93 19 chr4 3618112 3618273 -180670389 + Charlie8 DNA MER1_type 50 222 -2195 2484 68 0 3 chr4 3618829 3619140 -180669522 - AluY SINE Alu -1 310 1 21 36 0 0 chr4 3619437 3619465 -180669197 + AT_rich Low_complexity Low_complexity 1 28 0 211 279 49 0 chr4 3619469 3619530 -180669132 + L2 LINE L2 3250 3313 0 267 316 54 57 chr4 3619587 3619919 -180668743 - L1 LINE L1 -2294 3852 3522 363 228 0 0 chr4 3620186 3620278 -180668384 + (TG)n Simple_repeat Simple_repeat 1 92 0 361 385 23 8 chr4 3621080 3621337 -180667325 + HERVL LTR ERVL 4346 4606 -1048 318 291 146 25 chr4 3623149 3623307 -180665355 - MIR SINE MIR -78 184 8 1334 209 40 62 chr4 3623474 3623960 -180664702 - MER51A LTR ERV1 0 634 1 2214 92 0 31 chr4 3624010 3624327 -180664335 - AluY SINE Alu -4 307 1 586 263 97 64 chr4 3624741 3625114 -180663548 - MLT1D LTR MaLR -115 390 6 254 191 0 0 chr4 3625172 3625219 -180663443 + L1MC3 LINE L1 7103 7149 -636 492 294 37 0 chr4 3625339 3625526 -180663136 + L1MC3 LINE L1 7583 7776 -9 1874 131 19 44 chr4 3625542 3625862 -180662800 + AluSx SINE Alu 1 312 0 243 243 0 34 chr4 3627400 3627577 -180661085 + CT-rich Low_complexity Low_complexity 4 174 0 303 186 70 23 chr4 3627581 3627710 -180660952 + (CTCA)n Simple_repeat Simple_repeat 2 136 0 * 308 306 6 44 chr4 3627631 3627814 -180660848 + C-rich Low_complexity Low_complexity 1 176 0 * 473 261 0 43 chr4 3627739 3627923 -180660739 + CT-rich Low_complexity Low_complexity 4 179 0 203 240 0 38 chr4 3627946 3628129 -180660533 + CT-rich Low_complexity Low_complexity 4 179 0 192 380 50 0 chr4 3629648 3629748 -180658914 - MIR SINE MIR -79 183 79 201 293 0 0 chr4 3630103 3630178 -180658484 + CT-rich Low_complexity Low_complexity 1 75 0 1018 126 6 16 chr4 3631051 3631091 -180657571 + (GGGA)n Simple_repeat Simple_repeat 1 219 0 1018 126 6 16 chr4 3631091 3631273 -180657389 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 401 318 28 5 chr4 3631861 3632072 -180656590 + L1MC4 LINE L1 6798 7013 -1029 23 0 0 0 chr4 3632584 3632607 -180656055 + AT_rich Low_complexity Low_complexity 1 23 0 1355 179 50 22 chr4 3632990 3633011 -180655651 + MLT1A2 LTR MaLR 48 67 -307 2906 85 0 8 chr4 3633011 3633389 -180655273 - THE1C LTR MaLR 0 375 1 1355 179 50 22 chr4 3633389 3633685 -180654977 + MLT1A2 LTR MaLR 67 374 0 241 241 17 0 chr4 3633936 3633994 -180654668 + GA-rich Low_complexity Low_complexity 2 60 0 698 299 40 26 chr4 3634651 3634999 -180653663 + L1M4 LINE L1 4553 4905 -1241 189 273 0 0 chr4 3635791 3635835 -180652827 + MIR SINE MIR 216 259 -3 233 384 13 25 chr4 3637430 3637589 -180651073 - L2 LINE L2 -434 2880 2724 856 79 28 17 chr4 3638178 3638355 -180650307 + (TG)n Simple_repeat Simple_repeat 2 180 0 218 214 0 36 chr4 3638438 3638494 -180650168 + CT-rich Low_complexity Low_complexity 2 55 0 223 120 20 20 chr4 3638542 3638592 -180650070 + CT-rich Low_complexity Low_complexity 4 53 0 1184 288 77 23 chr4 3638647 3639130 -180649532 - MLT1H LTR MaLR -4 545 37 945 224 13 47 chr4 3639661 3639893 -180648769 + MER58A DNA MER1_type 1 224 0 257 329 125 54 chr4 3640138 3640433 -180648229 + L2 LINE L2 2957 3272 0 183 80 0 0 chr4 3640436 3640461 -180648201 + (GGAA)n Simple_repeat Simple_repeat 2 26 0 1026 155 3 8 chr4 3640477 3640852 -180647810 + (TGGA)n Simple_repeat Simple_repeat 1 372 0 384 271 16 8 chr4 3641638 3641760 -180646902 - MER45A DNA AcHobo -19 159 37 576 125 0 61 chr4 3642671 3643199 -180645463 + (CA)n Simple_repeat Simple_repeat 1 495 0 707 35 40 52 chr4 3645322 3645496 -180643166 + (CA)n Simple_repeat Simple_repeat 1 172 0 434 271 87 5 chr4 3645496 3645714 -180642948 - MER89 LTR ERV1 -323 236 1 743 225 12 0 chr4 3647001 3647170 -180641492 + MER41D LTR ERV1 387 557 0 427 256 51 70 chr4 3648745 3648901 -180639761 + MIR SINE MIR 108 260 -2 203 163 0 61 chr4 3648918 3648967 -180639695 + GA-rich Low_complexity Low_complexity 6 51 0 1210 217 127 42 chr4 3649768 3650178 -180638484 - LTR56 LTR ERV1 0 445 1 498 221 31 0 chr4 3650236 3650363 -180638299 + MER57A LTR ERV1 1 131 -272 474 269 83 0 chr4 3650372 3650528 -180638134 + MER57A LTR ERV1 235 403 0 235 250 18 0 chr4 3652203 3652259 -180636403 + MIR3 SINE MIR 109 165 -43 218 331 230 25 chr4 3652699 3653095 -180635567 - L2 LINE L2 -540 2774 2298 233 305 191 0 chr4 3653239 3653344 -180635318 - MIR SINE MIR -62 146 22 459 233 0 0 chr4 3653361 3653490 -180635172 + (CA)n Simple_repeat Simple_repeat 1 129 0 202 258 21 0 chr4 3654808 3654872 -180633790 - MIR SINE MIR -104 158 94 291 344 40 8 chr4 3655277 3655402 -180633260 + L3 LINE CR1 1359 1487 -90 1328 226 72 0 chr4 3655426 3655785 -180632877 + L1MB3 LINE L1 5776 6160 -23 206 316 153 45 chr4 3655832 3656145 -180632517 - L2 LINE L2 -75 3197 2851 277 165 37 28 chr4 3656315 3656394 -180632268 - MIR SINE MIR -78 184 106 338 361 38 13 chr4 3657968 3658126 -180630536 + HAL1b LINE L1 514 675 -673 1184 204 91 14 chr4 3658892 3659229 -180629433 - MLT1A1 LTR MaLR 0 365 43 312 208 78 0 chr4 3659449 3659526 -180629136 - MLT1A1 LTR MaLR -291 83 1 456 332 80 9 chr4 3659645 3659970 -180628692 + LTR16A1 LTR ERVL 59 406 -51 213 325 26 0 chr4 3661151 3661265 -180627397 + (CTCA)n Simple_repeat Simple_repeat 2 118 0 571 250 61 80 chr4 3661989 3662365 -180626297 - MLT1B LTR MaLR -15 375 7 361 292 72 41 chr4 3662652 3662847 -180625815 + MIR SINE MIR 60 260 -2 420 278 75 79 chr4 3664226 3664453 -180624209 + HAL1 LINE L1 1093 1318 -1189 284 221 0 13 chr4 3664624 3664701 -180623961 - L1M4 LINE L1 -1162 4984 4909 330 361 104 17 chr4 3664903 3665133 -180623529 - L1M4 LINE L1 -1475 4671 4422 331 276 57 0 chr4 3665226 3665349 -180623313 + LTR33 LTR ERVL 84 213 -308 493 270 23 23 chr4 3666043 3666217 -180622445 + MLT1K LTR MaLR 394 567 -21 353 321 18 0 chr4 3666599 3666708 -180621954 - MIR SINE MIR -71 191 81 343 151 82 0 chr4 3667052 3667125 -180621537 + MLT1H LTR MaLR 471 549 0 1100 266 32 34 chr4 3667498 3667878 -180620784 + MLT1E2 LTR MaLR 1 379 -247 420 55 0 0 chr4 3667927 3667982 -180620680 + (TG)n Simple_repeat Simple_repeat 1 55 0 1028 218 50 34 chr4 3667983 3668304 -180620358 - MLT2D LTR ERVL -84 330 5 614 302 22 0 chr4 3668305 3668530 -180620132 + MLT1E2 LTR MaLR 380 609 -17 1053 139 0 11 chr4 3768800 3769338 -180519324 + (CATTC)n Satellite Satellite 1 532 0 1086 124 0 5 chr4 3769349 3769783 -180518879 + (CATTC)n Satellite Satellite 1 431 0 1110 127 0 0 chr4 3769827 3770187 -180518475 + (CATTC)n Satellite Satellite 1 360 0 306 147 0 0 chr4 3770210 3770278 -180518384 + (CATTC)n Satellite Satellite 2 69 0 1093 129 2 27 chr4 3770419 3770962 -180517700 + (CATTC)n Satellite Satellite 1 529 0 945 131 0 16 chr4 3770992 3771356 -180517306 + (CATTC)n Satellite Satellite 1 359 0 1110 100 0 0 chr4 3771397 3771577 -180517085 + (CATTC)n Satellite Satellite 1 180 0 514 164 0 51 chr4 3771593 3771770 -180516892 + (CATTC)n Satellite Satellite 2 169 0 1026 135 0 17 chr4 3771892 3772536 -180516126 + (CATTC)n Satellite Satellite 1 633 0 390 159 0 0 chr4 3772552 3772640 -180516022 + (CATTC)n Satellite Satellite 2 89 0 1311 94 0 7 chr4 3772652 3773201 -180515461 + (CATTC)n Satellite Satellite 1 544 0 360 111 0 0 chr4 3773222 3773285 -180515377 + (CATTC)n Satellite Satellite 2 64 0 876 149 0 0 chr4 3773296 3773470 -180515192 + (CATTC)n Satellite Satellite 1 174 0 787 136 6 6 chr4 3773482 3773658 -180515004 + (CATTC)n Satellite Satellite 2 177 0 282 29 0 0 chr4 3773686 3773721 -180514941 + (CATTC)n Satellite Satellite 2 36 0 938 117 0 6 chr4 3773736 3773907 -180514755 + (CATTC)n Satellite Satellite 2 171 0 1081 105 4 4 chr4 3773922 3774175 -180514487 + (CATTC)n Satellite Satellite 1 253 0 882 131 0 0 chr4 3774187 3774355 -180514307 + (CATTC)n Satellite Satellite 2 169 0 320 43 22 0 chr4 3774367 3774413 -180514249 + (CATTC)n Satellite Satellite 2 48 0 855 111 0 36 chr4 3774519 3774799 -180513863 + (GAATG)n Satellite Satellite 1 269 0 270 132 0 0 chr4 3774810 3774863 -180513799 + (GAATG)n Satellite Satellite 2 54 0 1062 99 0 0 chr4 3774875 3775046 -180513616 + (GAATG)n Satellite Satellite 4 174 0 929 128 0 23 chr4 3775077 3775688 -180512974 + (GAATG)n Satellite Satellite 1 773 0 881 124 0 27 chr4 3775704 3775889 -180512773 + (GAATG)n Satellite Satellite 1 180 0 951 110 0 0 chr4 3775908 3776113 -180512549 + (GAATG)n Satellite Satellite 1 205 0 618 189 0 0 chr4 3776128 3776303 -180512359 + (GAATG)n Satellite Satellite 2 176 0 1026 122 0 0 chr4 3776324 3776504 -180512158 + (GAATG)n Satellite Satellite 1 180 0 954 121 0 0 chr4 3776515 3776723 -180511939 + (GAATG)n Satellite Satellite 1 208 0 1047 112 0 0 chr4 3776739 3776918 -180511744 + (GAATG)n Satellite Satellite 2 180 0 268 169 12 12 chr4 3776930 3777013 -180511649 + (GAATG)n Satellite Satellite 2 84 0 991 106 6 6 chr4 3777024 3777203 -180511459 + (GAATG)n Satellite Satellite 2 180 0 1122 100 0 0 chr4 3777214 3777394 -180511268 + (GAATG)n Satellite Satellite 1 180 0 939 153 0 0 chr4 3777438 3777801 -180510861 + (GAATG)n Satellite Satellite 1 363 0 969 146 0 2 chr4 3777817 3778136 -180510526 + (GAATG)n Satellite Satellite 1 498 0 858 107 0 0 chr4 3778151 3778301 -180510361 + (GAATG)n Satellite Satellite 2 151 0 1140 101 0 0 chr4 3778312 3778490 -180510172 + (GAATG)n Satellite Satellite 3 180 0 261 155 0 0 chr4 3778506 3778564 -180510098 + (GAATG)n Satellite Satellite 4 61 0 1014 122 0 14 chr4 3778581 3778942 -180509720 + (GAATG)n Satellite Satellite 1 356 0 1014 155 0 0 chr4 3778957 3779376 -180509286 + (GAATG)n Satellite Satellite 1 419 0 1132 80 5 8 chr4 3779387 3779596 -180509066 + (GAATG)n Satellite Satellite 1 388 0 1191 81 0 0 chr4 3779607 3779780 -180508882 + (GAATG)n Satellite Satellite 2 174 0 383 170 10 0 chr4 3779793 3779893 -180508769 + (GAATG)n Satellite Satellite 2 102 0 1035 136 1 4 chr4 3780023 3780537 -180508125 + (GAATG)n Satellite Satellite 2 680 0 1068 106 0 0 chr4 3780554 3780733 -180507929 + (GAATG)n Satellite Satellite 1 179 0 1122 100 0 0 chr4 3780748 3780928 -180507734 + (GAATG)n Satellite Satellite 1 180 0 1104 120 0 6 chr4 3780972 3781332 -180507330 + (GAATG)n Satellite Satellite 1 536 0 1044 107 0 2 chr4 3781351 3781581 -180507081 + (GAATG)n Satellite Satellite 1 409 0 781 129 6 6 chr4 3781593 3781756 -180506906 + (GAATG)n Satellite Satellite 2 164 0 1092 112 0 17 chr4 3781768 3782211 -180506451 + (GAATG)n Satellite Satellite 1 612 0 1101 98 0 0 chr4 3782223 3782616 -180506046 + (GAATG)n Satellite Satellite 1 393 0 781 129 6 6 chr4 3782628 3782791 -180505871 + (GAATG)n Satellite Satellite 2 164 0 927 139 0 0 chr4 3782807 3782987 -180505675 + (GAATG)n Satellite Satellite 1 180 0 1068 115 0 0 chr4 3782998 3783262 -180505400 + (GAATG)n Satellite Satellite 1 264 0 331 310 18 0 chr4 3885059 3885172 -180403490 - L1MC4 LINE L1 -7 8035 7921 1906 208 50 2 chr4 3885316 3885797 -180402865 - L1 LINE L1 -2178 3968 3465 721 128 29 87 chr4 3885797 3885969 -180402693 - MSTC LTR MaLR -242 186 25 454 266 74 87 chr4 3887113 3887342 -180401320 + HAL1 LINE L1 1093 1318 -1189 1979 160 0 0 chr4 3887542 3887854 -180400808 - AluJb SINE Alu 0 312 1 1032 191 14 0 chr4 3887855 3888065 -180400597 + Tigger2 DNA MER2_type 2481 2693 -25 441 306 38 25 chr4 3889261 3889418 -180399244 + MIR SINE MIR 38 196 -66 4094 269 50 10 chr4 3889657 3891176 -180397486 - L1MEc LINE L1 -2515 3700 2167 317 284 88 10 chr4 3891248 3891442 -180397220 - L1MEc LINE L1 -6153 243 35 321 288 174 29 chr4 3891517 3891798 -180396864 + L2 LINE L2 2949 3270 -2 244 350 49 0 chr4 3891918 3892041 -180396621 + MIR SINE MIR 2 130 -132 323 324 99 38 chr4 3892157 3892419 -180396243 - L2 LINE L2 -35 3278 3001 1460 165 14 25 chr4 3892571 3892856 -180395806 + MER21B LTR ERV1 1 282 -581 374 113 0 70 chr4 3892855 3892926 -180395736 + MER21B LTR ERV1 217 282 -581 * 366 159 0 0 chr4 3892933 3892996 -180395666 + MER21B LTR ERV1 220 282 -581 2026 196 70 0 chr4 3893003 3893447 -180395215 + MER21B LTR ERV1 220 694 -169 332 182 39 0 chr4 3893444 3893521 -180395141 + MER21B LTR ERV1 615 694 -169 * 579 244 72 16 chr4 3893518 3893711 -180394951 + MER21B LTR ERV1 615 818 -45 521 118 0 21 chr4 3895784 3895877 -180392785 + (GGGA)n Simple_repeat Simple_repeat 2 92 0 981 248 100 12 chr4 3896121 3896541 -180392121 - MLT1C LTR MaLR -10 457 1 191 250 0 54 chr4 3898498 3898554 -180390108 - L2 LINE L2 -228 3044 2992 183 208 19 57 chr4 3899378 3899431 -180389231 + MIR3 SINE MIR 112 162 -46 248 290 30 40 chr4 3899576 3899676 -180388986 + MIR SINE MIR 108 206 -56 2217 219 50 9 chr4 3899805 3900384 -180388278 - LTR26 LTR ERV1 0 603 1 245 292 18 48 chr4 3901537 3901705 -180386957 + (CCCA)n Simple_repeat Simple_repeat 2 164 0 395 302 11 22 chr4 3901927 3902106 -180386556 + (TCCA)n Simple_repeat Simple_repeat 2 178 0 598 298 174 11 chr4 3902190 3902546 -180386116 - L2 LINE L2 0 3313 2900 283 402 16 16 chr4 3903139 3903323 -180385339 + MIR SINE MIR 23 206 -56 238 300 0 63 chr4 3904509 3904699 -180383963 + CT-rich Low_complexity Low_complexity 3 180 0 * 295 262 0 78 chr4 3904559 3904750 -180383912 + C-rich Low_complexity Low_complexity 2 177 0 28 0 0 0 chr4 3905629 3905657 -180383005 + AT_rich Low_complexity Low_complexity 1 28 0 422 286 86 0 chr4 3906033 3906173 -180382489 - MIR SINE MIR -106 156 5 372 297 182 0 chr4 3906174 3906339 -180382323 - MIR SINE MIR -3 259 65 1087 276 100 22 chr4 3906453 3906816 -180381846 + L1ME LINE L1 4755 5088 -1078 1585 168 0 11 chr4 3906816 3907102 -180381560 + AluJb SINE Alu 30 312 0 1087 276 100 22 chr4 3907102 3907485 -180381177 + L1ME LINE L1 5088 5578 -588 647 151 0 92 chr4 3907485 3907592 -180381070 - MLT1C LTR MaLR -329 138 47 1448 147 140 29 chr4 3907592 3907864 -180380798 - AluJo SINE Alu 0 302 1 647 151 0 92 chr4 3907864 3907908 -180380754 - MLT1C LTR MaLR -420 47 1 3921 101 45 62 chr4 3908286 3908931 -180379731 + MER51A LTR ERV1 1 634 0 924 236 13 81 chr4 3909008 3909317 -180379345 + MLT1A2 LTR MaLR 4 291 -83 455 267 9 0 chr4 3909321 3909437 -180379225 + MLT1A2 LTR MaLR 258 374 0 303 359 109 41 chr4 3909710 3910156 -180378506 + HAL1b LINE L1 3 438 -893 2703 118 3 0 chr4 3910156 3910530 -180378132 + THE1C LTR MaLR 1 375 0 1576 187 13 13 chr4 3911093 3911403 -180377259 - LOR1a LTR ERV1 0 497 188 603 156 15 46 chr4 3911405 3911754 -180376908 + GA-rich Low_complexity Low_complexity 1 337 0 643 115 0 73 chr4 3911766 3911958 -180376704 + (GGGA)n Simple_repeat Simple_repeat 2 179 0 404 166 14 48 chr4 3911960 3912105 -180376557 + GA-rich Low_complexity Low_complexity 4 143 0 502 266 62 49 chr4 3912160 3912386 -180376276 + L1M4 LINE L1 2177 2405 -3741 1495 217 48 0 chr4 3913255 3913592 -180375070 + MLT1B LTR MaLR 7 359 -31 2209 131 39 25 chr4 3913820 3914178 -180374484 + THE1B LTR MaLR 2 364 0 379 313 142 4 chr4 3914586 3914819 -180373843 - MLT1H LTR MaLR -284 265 1 495 108 21 59 chr4 3915189 3915375 -180373287 + (TG)n Simple_repeat Simple_repeat 2 180 0 202 143 26 65 chr4 3915397 3915551 -180373111 + (TG)n Simple_repeat Simple_repeat 2 149 0 377 183 30 55 chr4 3915574 3915738 -180372924 + (TG)n Simple_repeat Simple_repeat 1 160 0 417 144 45 61 chr4 3915750 3916188 -180372474 + (TG)n Simple_repeat Simple_repeat 1 430 0 253 116 87 0 chr4 3917768 3917837 -180370825 + (CA)n Simple_repeat Simple_repeat 2 76 0 874 138 44 3 chr4 3917941 3918291 -180370371 + (TGGA)n Simple_repeat Simple_repeat 1 364 0 853 100 47 0 chr4 3918308 3918478 -180370184 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 843 94 53 0 chr4 3918515 3918686 -180369976 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 724 144 28 31 chr4 3918702 3919059 -180369603 + (TGGA)n Simple_repeat Simple_repeat 1 355 0 681 142 35 0 chr4 3919109 3919278 -180369384 + (TGGA)n Simple_repeat Simple_repeat 4 178 0 329 313 12 6 chr4 3919640 3919803 -180368859 + (TG)n Simple_repeat Simple_repeat 1 164 0 608 253 57 26 chr4 3919869 3920063 -180368599 + MER63A DNA MER1_type 1 200 -10 258 305 76 29 chr4 3920516 3920621 -180368041 - L2 LINE L2 -4 3268 3159 240 263 113 42 chr4 3921513 3921726 -180366936 - L2 LINE L2 -248 3065 2838 374 285 108 37 chr4 3921836 3922050 -180366612 - MIR SINE MIR -24 238 10 1167 140 0 7 chr4 3922262 3922591 -180366071 + (CTCA)n Simple_repeat Simple_repeat 1 502 0 1056 141 0 0 chr4 3922591 3922768 -180365894 + (CTCA)n Simple_repeat Simple_repeat 3 179 0 513 121 0 0 chr4 3922815 3922898 -180365764 + (CTCA)n Simple_repeat Simple_repeat 1 83 0 402 74 0 0 chr4 3924698 3924752 -180363910 + (TGAA)n Simple_repeat Simple_repeat 4 57 0 241 287 130 0 chr4 3924976 3925084 -180363578 + MIR SINE MIR 80 201 -61 290 151 0 129 chr4 3925403 3925496 -180363166 + L2 LINE L2 3003 3083 -189 295 263 150 0 chr4 3927345 3927478 -180361184 + L2 LINE L2 2651 2803 -511 2117 102 0 0 chr4 3928140 3928424 -180360238 + AluSx SINE Alu 9 292 -20 499 282 0 39 chr4 3929116 3929297 -180359365 + (CA)n Simple_repeat Simple_repeat 1 174 0 198 319 0 0 chr4 3929315 3929459 -180359203 + (CA)n Simple_repeat Simple_repeat 1 144 0 508 341 0 9 chr4 3929481 3929980 -180358682 + (CA)n Simple_repeat Simple_repeat 1 494 0 547 350 0 0 chr4 3930007 3930370 -180358292 + (CA)n Simple_repeat Simple_repeat 1 363 0 398 388 0 0 chr4 3930402 3930580 -180358082 + (CA)n Simple_repeat Simple_repeat 1 178 0 569 256 8 0 chr4 3931050 3931183 -180357479 + MLT1C LTR MaLR 320 453 -14 499 245 71 0 chr4 3931907 3932062 -180356600 - MER92B LTR ERV1 -397 239 74 406 306 52 8 chr4 3932117 3932228 -180356434 + L1MC4a LINE L1 4920 5039 -1107 797 113 38 38 chr4 3932228 3932361 -180356301 + FLAM_C SINE Alu 1 133 0 406 306 52 8 chr4 3932361 3932383 -180356279 + L1MC4a LINE L1 5039 5059 -1087 549 346 67 38 chr4 3932625 3933278 -180355384 + L1MC4a LINE L1 5254 5925 -1883 625 321 130 21 chr4 3933298 3933774 -180354888 + L1MEc LINE L1 38 565 -5831 878 264 43 58 chr4 3933936 3933968 -180354694 + L1MEc LINE L1 730 761 -5444 342 0 0 0 chr4 3933968 3934006 -180354656 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 878 264 43 58 chr4 3934006 3934557 -180354105 + L1MEc LINE L1 761 1191 -5014 2195 109 0 0 chr4 3934557 3934851 -180353811 + AluSx SINE Alu 2 295 -17 878 264 43 58 chr4 3934851 3934865 -180353797 + L1MEc LINE L1 1191 1204 -5001 824 139 16 4 chr4 3934911 3935429 -180353233 + (CA)n Simple_repeat Simple_repeat 1 524 0 468 319 47 0 chr4 3935429 3935664 -180352998 + L1MEc LINE L1 1396 1641 -4755 580 295 52 41 chr4 3935691 3936057 -180352605 + L1MCc LINE L1 51 420 -6003 1023 257 70 43 chr4 3936335 3937101 -180351561 + L1MCc LINE L1 1729 2473 -4649 2275 86 0 0 chr4 3937101 3937392 -180351270 + AluY SINE Alu 1 291 -20 684 67 0 0 chr4 3937399 3937489 -180351173 + (TA)n Simple_repeat Simple_repeat 1 90 0 1023 257 70 43 chr4 3937489 3937635 -180351027 + L1MCc LINE L1 2478 2925 -4197 352 316 95 38 chr4 3937713 3938329 -180350333 + L1MC4 LINE L1 7315 8042 0 236 275 72 0 chr4 3938561 3938630 -180350032 + MLT1K LTR MaLR 169 242 -346 227 339 148 16 chr4 3938687 3938876 -180349786 + MLT1K LTR MaLR 375 588 0 619 254 19 17 chr4 3939100 3939315 -180349347 + L1ME LINE L1 5392 5593 -577 207 218 0 0 chr4 3939324 3939379 -180349283 + (TG)n Simple_repeat Simple_repeat 2 56 0 1627 177 5 124 chr4 3939390 3939785 -180348877 + Tigger3(Golem) DNA MER2_type 1 3028 -1 329 295 0 71 chr4 3939956 3940068 -180348594 + L1MCc LINE L1 2856 2959 -3982 392 127 0 13 chr4 3940100 3940179 -180348483 + (TG)n Simple_repeat Simple_repeat 1 78 0 1901 117 0 0 chr4 3942977 3943243 -180345419 + AluSx SINE Alu 30 295 -17 396 340 49 21 chr4 3943292 3943600 -180345062 + L1ME3A LINE L1 987 1274 -4931 255 299 73 15 chr4 3943616 3943753 -180344909 + L1ME3A LINE L1 4294 4438 -1777 1989 141 3 3 chr4 3943779 3944084 -180344578 + AluSx SINE Alu 1 305 -7 1575 226 52 39 chr4 3944087 3944222 -180344440 - MLT2D LTR ERVL 0 464 332 2277 77 0 0 chr4 3944222 3944507 -180344155 - AluSg SINE Alu -16 294 10 1575 226 52 39 chr4 3944507 3944847 -180343815 - MLT2D LTR ERVL -132 332 1 510 180 17 133 chr4 3944876 3945109 -180343553 + L1ME3A LINE L1 4477 4682 -1533 342 254 0 0 chr4 3945111 3945221 -180343441 + (TG)n Simple_repeat Simple_repeat 2 111 0 814 292 75 53 chr4 3945325 3946110 -180342552 + L1ME3A LINE L1 4732 5532 -707 548 143 51 41 chr4 3946128 3946226 -180342436 + FLAM_A SINE Alu 37 135 -7 447 209 133 0 chr4 3946237 3946342 -180342320 + L1ME3A LINE L1 5554 5672 -559 375 273 93 12 chr4 3946444 3946605 -180342057 + L1ME3A LINE L1 5847 6020 -219 311 282 24 0 chr4 3948330 3948415 -180340247 - MIR SINE MIR -168 94 8 978 151 19 23 chr4 3948641 3949081 -180339581 + (TGGA)n Simple_repeat Simple_repeat 1 438 0 631 127 17 0 chr4 3950260 3950378 -180338284 + (TGGA)n Simple_repeat Simple_repeat 1 120 0 321 355 24 6 chr4 3950387 3950556 -180338106 + (TGGG)n Simple_repeat Simple_repeat 3 174 0 840 158 11 6 chr4 3950763 3950940 -180337722 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 623 243 5 5 chr4 3950962 3951342 -180337320 + (TGGA)n Simple_repeat Simple_repeat 1 380 0 210 158 0 0 chr4 3951349 3951387 -180337275 + (TTA)n Simple_repeat Simple_repeat 3 40 0 202 310 42 0 chr4 3952790 3952861 -180335801 - MIR3 SINE MIR -21 187 114 448 158 21 0 chr4 3952895 3952990 -180335672 + CT-rich Low_complexity Low_complexity 1 97 0 1245 165 53 102 chr4 3954784 3954944 -180333718 - L1PA15 LINE L1 0 6165 6027 2166 108 0 16 chr4 3954944 3955258 -180333404 - AluSg1 SINE Alu 0 309 1 1245 165 53 102 chr4 3955258 3955419 -180333243 - L1PA15 LINE L1 -138 6027 5860 195 207 12 73 chr4 3955424 3955506 -180333156 + L2 LINE L2 3023 3099 -214 294 363 0 0 chr4 3955520 3955699 -180332963 + C-rich Low_complexity Low_complexity 1 179 0 259 209 15 15 chr4 3955733 3955800 -180332862 - LTR16B LTR ERVL -4 460 394 229 287 15 59 chr4 3956192 3956328 -180332334 + MLT1H LTR MaLR 16 145 -404 1728 152 14 0 chr4 3957357 3957647 -180331015 + AluJb SINE Alu 1 294 -18 601 346 146 14 chr4 3957876 3958364 -180330298 - L1MC4 LINE L1 -272 7770 7219 1027 220 65 17 chr4 3958367 3958795 -180329867 - MLT1D LTR MaLR -4 501 1 255 291 24 31 chr4 3958965 3959092 -180329570 - L1MC4 LINE L1 -1055 6987 6862 449 346 181 25 chr4 3959152 3959683 -180328979 - L1MC4a LINE L1 -1128 6680 6067 202 192 12 52 chr4 3959773 3959945 -180328717 + (TG)n Simple_repeat Simple_repeat 2 166 0 342 176 15 48 chr4 3959965 3960516 -180328146 + (TG)n Simple_repeat Simple_repeat 1 532 0 291 154 21 42 chr4 3960552 3960695 -180327967 + (TG)n Simple_repeat Simple_repeat 1 140 0 238 175 23 41 chr4 3960773 3960944 -180327718 + (TG)n Simple_repeat Simple_repeat 1 168 0 350 164 29 29 chr4 3961020 3961191 -180327471 + (TG)n Simple_repeat Simple_repeat 2 172 0 198 94 19 38 chr4 3961233 3961286 -180327376 + (TG)n Simple_repeat Simple_repeat 1 52 0 375 140 28 39 chr4 3961308 3961487 -180327175 + (TG)n Simple_repeat Simple_repeat 2 178 0 380 197 15 47 chr4 3961516 3961799 -180326863 + (TG)n Simple_repeat Simple_repeat 1 273 0 364 160 38 28 chr4 3961810 3962105 -180326557 + (TG)n Simple_repeat Simple_repeat 1 298 0 449 144 48 12 chr4 3962134 3962301 -180326361 + (TG)n Simple_repeat Simple_repeat 2 174 0 1026 301 73 5 chr4 3962492 3962918 -180325744 - L1MC4a LINE L1 -2058 5750 5296 1669 212 13 18 chr4 3965726 3966108 -180322554 - LTR8 LTR ERV1 0 691 312 230 137 41 14 chr4 3966213 3966286 -180322376 + (TG)n Simple_repeat Simple_repeat 2 76 0 1044 298 73 5 chr4 3966477 3966903 -180321759 - L1MC/D LINE L1 -2058 5750 5296 3521 163 18 74 chr4 3969087 3969819 -180318843 - LTR8 LTR ERV1 0 691 1 398 222 16 29 chr4 3970312 3970489 -180318173 + ORSL DNA AcHobo 41 253 -22 3892 118 11 33 chr4 3970489 3970964 -180317698 + MER4A LTR ERV1 1 462 -138 2146 115 0 3 chr4 3970964 3971268 -180317394 + AluSg1 SINE Alu 7 309 0 3892 118 11 33 chr4 3971268 3971405 -180317257 + MER4A LTR ERV1 462 600 0 398 222 16 29 chr4 3971405 3971428 -180317234 + ORSL DNA AcHobo 253 275 0 194 240 0 20 chr4 3971629 3971679 -180316983 + L2 LINE L2 3168 3216 -56 778 176 4 11 chr4 3971726 3972007 -180316655 + (TGGA)n Simple_repeat Simple_repeat 1 278 0 693 193 0 0 chr4 3972024 3972174 -180316488 + (TGGA)n Simple_repeat Simple_repeat 3 152 0 399 205 0 12 chr4 3974423 3974506 -180314156 + MIR SINE MIR 80 161 -101 820 248 96 0 chr4 3974552 3974782 -180313880 - MER83B LTR ERV1 0 378 127 238 226 32 0 chr4 3975164 3975226 -180313436 - MER83B LTR ERV1 -181 197 134 622 224 14 7 chr4 3975284 3975427 -180313235 - MER83C LTR ERV1 -181 192 49 954 281 16 79 chr4 3975526 3976018 -180312644 - MLT1J LTR MaLR -14 497 37 351 127 48 0 chr4 3976602 3976665 -180311997 - MLT1J LTR MaLR -396 71 6 318 276 264 23 chr4 3976671 3976845 -180311817 - L1ME2 LINE L1 -37 6127 5912 225 61 0 0 chr4 3977081 3977114 -180311548 + AluJo SINE Alu 1 33 -266 2475 84 5 11 chr4 3977115 3977494 -180311168 + MER41B LTR ERV1 1 377 -258 648 167 0 0 chr4 3977496 3977610 -180311052 + MER41B LTR ERV1 510 623 -12 1169 195 0 56 chr4 3977617 3977739 -180310923 + AluJo SINE Alu 22 149 -163 1664 153 29 52 chr4 3977739 3978047 -180310615 + AluJb SINE Alu 1 301 -11 1169 195 0 56 chr4 3978047 3978226 -180310436 + AluJo SINE Alu 149 306 -6 2259 95 7 0 chr4 3978620 3978925 -180309737 + AluSg SINE Alu 1 307 -3 353 165 252 68 chr4 3978994 3979097 -180309565 - FLAM_A SINE Alu -9 124 3 589 251 6 16 chr4 3979195 3979378 -180309284 + HAL1b LINE L1 286 466 -882 1848 114 0 29 chr4 3979428 3979700 -180308962 + AluSx SINE Alu 35 298 -14 540 257 14 7 chr4 3979709 3979857 -180308805 + MLT1C LTR MaLR 34 182 -285 * 647 184 85 85 chr4 3979840 3979859 -180308803 - MSTD LTR MaLR -49 345 328 2179 122 0 0 chr4 3979859 3980170 -180308492 + AluSx SINE Alu 1 311 -1 647 184 85 85 chr4 3980170 3980451 -180308211 - MSTD LTR MaLR -66 328 2 817 200 0 24 chr4 3981763 3981928 -180306734 - FAM SINE Alu -5 44 1 2071 123 6 22 chr4 3981954 3982272 -180306390 - AluSq SINE Alu 0 313 1 346 226 24 0 chr4 3982297 3982381 -180306281 - MIR SINE MIR -100 162 77 203 362 61 43 chr4 3982484 3982647 -180306015 + MIR SINE MIR 16 181 -81 217 255 61 0 chr4 3983068 3983152 -180305510 + MIR SINE MIR 104 192 -60 1608 247 119 17 chr4 3983871 3984306 -180304356 - MER69B DNA AcHobo -1342 1184 668 1579 170 53 3 chr4 3984306 3984589 -180304073 + AluJb SINE Alu 1 297 -15 1608 247 119 17 chr4 3984589 3984756 -180303906 - MER69B DNA AcHobo -1858 668 520 591 258 97 24 chr4 3984905 3985235 -180303427 - MER74B LTR ERVL -56 566 213 875 349 69 4 chr4 3985481 3986003 -180302659 + L1M4 LINE L1 3868 4423 -1723 380 249 35 56 chr4 3986018 3986215 -180302447 + L1M4 LINE L1 4462 4654 -1492 752 178 0 30 chr4 3986244 3986379 -180302283 - FLAM_C SINE Alu 0 133 3 724 114 0 2 chr4 3986423 3986680 -180301982 + AluSx SINE Alu 1 308 -4 353 330 27 27 chr4 3986680 3986865 -180301797 - L2 LINE L2 -18 3295 3111 308 299 46 0 chr4 3987898 3987985 -180300677 + MIR SINE MIR 80 170 -92 1455 210 10 10 chr4 3988383 3988693 -180299969 - AluJo SINE Alu -2 310 1 861 146 14 17 chr4 3989483 3989838 -180298824 + (TCCA)n Simple_repeat Simple_repeat 1 353 0 570 217 23 0 chr4 3989867 3990042 -180298620 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 722 153 28 17 chr4 3990062 3990238 -180298424 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 641 182 20 20 chr4 3990267 3990522 -180298140 + (TCCA)n Simple_repeat Simple_repeat 1 255 0 775 150 24 22 chr4 3990541 3991049 -180297613 + (TCCA)n Simple_repeat Simple_repeat 1 509 0 556 167 53 0 chr4 3991079 3991229 -180297433 + (TCCA)n Simple_repeat Simple_repeat 4 161 0 248 283 160 19 chr4 3991244 3991350 -180297312 - L2 LINE L2 -13 3300 3180 225 307 93 13 chr4 3991341 3991491 -180297171 + L3 LINE CR1 1101 1262 -315 * 238 237 126 47 chr4 3991467 3991657 -180297005 - L2 LINE L2 -2250 1064 860 1295 51 93 0 chr4 3991679 3991894 -180296768 - LTR19A LTR ERV1 -245 241 7 509 274 83 34 chr4 3991898 3992102 -180296560 - L2 LINE L2 -2450 864 651 2322 130 33 41 chr4 3992171 3992720 -180295942 - MER4E LTR ERV1 0 766 51 315 32 143 0 chr4 3992731 3992794 -180295868 + CT-rich Low_complexity Low_complexity 2 73 0 6445 56 9 14 chr4 3992794 3993767 -180294895 + SVA Other Other 1 866 -592 6789 62 16 23 chr4 3993798 3994742 -180293920 + SVA Other Other 450 1386 0 460 134 49 120 chr4 3994775 3994839 -180293823 + LTR49-int LTR ERV1 3141 3191 -3140 2093 132 3 19 chr4 3994839 3995157 -180293505 - AluSq SINE Alu 0 313 1 460 134 49 120 chr4 3995157 3995234 -180293428 + LTR49-int LTR ERV1 3191 3272 -3059 309 200 0 0 chr4 3995294 3995354 -180293308 + LTR49-int LTR ERV1 3275 3334 -2997 446 194 20 0 chr4 3995415 3995513 -180293149 + LTR49-int LTR ERV1 3348 3447 -2884 372 56 42 42 chr4 3995715 3995786 -180292876 - MER4B LTR ERV1 -539 71 1 499 240 187 18 chr4 3995786 3996011 -180292651 - L2 LINE L2 -2993 321 59 516 205 169 62 chr4 3996162 3996469 -180292193 + LTR16A1 LTR ERVL 118 457 0 325 333 77 27 chr4 3997871 3998054 -180290608 - L1ME2 LINE L1 -3 6161 5970 449 206 40 16 chr4 3998689 3998815 -180289847 + L1MEc LINE L1 37 165 -6231 1742 127 20 31 chr4 3998894 3999186 -180289476 + AluJo SINE Alu 6 294 -18 209 169 0 78 chr4 4000367 4000444 -180288218 + G-rich Low_complexity Low_complexity 3 73 0 202 246 31 15 chr4 4000634 4000699 -180287963 - MIR3 SINE MIR -132 76 11 222 317 49 0 chr4 4000892 4000974 -180287688 - MIR3 SINE MIR -46 162 77 218 247 106 12 chr4 4001111 4001196 -180287466 + MIR3 SINE MIR 113 205 -3 2236 81 0 7 chr4 4003187 4003483 -180285179 - AluSx SINE Alu 0 312 19 499 186 224 13 chr4 4007640 4007796 -180280866 - MER46A DNA MER2_type 0 236 48 218 279 25 25 chr4 4008145 4008224 -180280438 + L3 LINE CR1 1403 1481 -96 245 306 93 28 chr4 4008877 4008985 -180279677 - MIR3 SINE MIR -87 121 7 195 129 0 0 chr4 4009666 4009697 -180278965 + (CTCTG)n Simple_repeat Simple_repeat 1 31 0 201 39 0 0 chr4 4010469 4010495 -180278167 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 739 139 17 0 chr4 4010497 4010612 -180278050 - FLAM_C SINE Alu -16 117 1 258 237 0 0 chr4 4013587 4013646 -180275016 + C-rich Low_complexity Low_complexity 1 59 0 216 347 51 0 chr4 4014996 4015094 -180273568 - L2 LINE L2 -6 3307 3205 1889 151 7 3 chr4 4018801 4019099 -180269563 + AluSx SINE Alu 1 299 -13 385 272 33 65 chr4 4020923 4021107 -180267555 - L1ME2 LINE L1 -296 5866 5689 331 275 89 108 chr4 4021486 4021755 -180266907 - L1ME3 LINE L1 -170 5975 5712 645 243 121 32 chr4 4021789 4021908 -180266754 - L1ME3 LINE L1 -1224 4905 4798 1532 148 10 79 chr4 4021908 4022213 -180266449 - AluJb SINE Alu -28 284 1 645 243 121 32 chr4 4022213 4022406 -180266256 - L1ME3 LINE L1 -1331 4798 4565 272 275 94 7 chr4 4023162 4023300 -180265362 - L1ME3 LINE L1 -1638 4491 4342 1094 317 108 25 chr4 4023572 4024046 -180264616 - L1ME3 LINE L1 -2173 3956 3523 2211 113 0 0 chr4 4024046 4024339 -180264323 + AluSx SINE Alu 1 293 -19 1094 317 108 25 chr4 4024339 4024718 -180263944 - L1ME3 LINE L1 -2606 3523 3032 386 284 28 124 chr4 4024743 4024961 -180263701 + L1M4 LINE L1 2645 2841 -3305 388 260 83 22 chr4 4024979 4025116 -180263546 - L1ME2 LINE L1 -742 5428 5301 1587 167 13 36 chr4 4025116 4025421 -180263241 - AluJo SINE Alu -14 298 1 388 260 83 22 chr4 4025421 4025583 -180263079 - L1ME2 LINE L1 -869 5301 5121 2269 81 7 0 chr4 4025681 4025977 -180262685 + AluSq SINE Alu 1 298 -15 1875 136 0 11 chr4 4025997 4026283 -180262379 + AluSx SINE Alu 11 293 -19 1952 125 0 72 chr4 4027377 4027575 -180261087 - AluSx SINE Alu -1 311 145 2171 113 16 7 chr4 4027575 4027885 -180260777 - AluSq SINE Alu 0 313 1 1952 125 0 72 chr4 4027885 4028021 -180260641 - AluSx SINE Alu -167 145 1 314 302 109 73 chr4 4028238 4028596 -180260066 - L1ME3 LINE L1 -5746 373 3 528 265 6 6 chr4 4028611 4028773 -180259889 - L1ME2 LINE L1 -3111 3035 2874 453 195 0 23 chr4 4028792 4028879 -180259783 + AluJ/FLAM SINE Alu 1 85 -227 338 330 128 5 chr4 4037117 4037320 -180251342 - MIR SINE MIR -33 229 2 205 322 0 11 chr4 4037359 4037446 -180251216 + (CAGG)n Simple_repeat Simple_repeat 3 88 0 197 216 78 0 chr4 4038262 4038313 -180250349 + MIR SINE MIR 95 149 -113 421 298 9 31 chr4 4040774 4041005 -180247657 + GA-rich Low_complexity Low_complexity 1 225 0 256 183 12 55 chr4 4041030 4041194 -180247468 + GA-rich Low_complexity Low_complexity 4 160 0 233 193 12 56 chr4 4041261 4041422 -180247240 + GA-rich Low_complexity Low_complexity 3 156 0 244 215 11 43 chr4 4041464 4041650 -180247012 + GA-rich Low_complexity Low_complexity 1 180 0 444 277 24 13 chr4 4041685 4042122 -180246540 + GA-rich Low_complexity Low_complexity 1 441 0 212 204 13 40 chr4 4042163 4042315 -180246347 + GA-rich Low_complexity Low_complexity 1 148 0 210 261 29 14 chr4 4044786 4044855 -180243807 + MIR3 SINE MIR 112 181 -27 253 311 104 0 chr4 4048138 4048244 -180240418 - MIR SINE MIR -63 145 32 333 282 150 0 chr4 4049580 4049793 -180238869 + MLT1H LTR MaLR 76 320 -229 296 239 0 65 chr4 4049836 4049936 -180238726 + MLT1G LTR MaLR 383 508 -80 2068 143 0 0 chr4 4051543 4051851 -180236811 - AluSx SINE Alu -4 308 1 193 248 69 59 chr4 4051996 4052097 -180236565 + L2 LINE L2 2992 3093 -179 277 335 78 48 chr4 4052953 4053183 -180235479 + MLT1C LTR MaLR 230 466 -1 255 251 0 73 chr4 4055861 4056040 -180232622 + (CGGG)n Simple_repeat Simple_repeat 4 169 0 315 187 66 0 chr4 4057175 4057266 -180231396 - MER96B DNA MER1_type? -62 355 259 643 163 0 0 chr4 4057267 4057365 -180231297 - AluSg/x SINE Alu -9 303 206 2105 126 0 0 chr4 4057366 4057660 -180231002 - AluSx SINE Alu -18 294 1 888 122 0 36 chr4 4057663 4057802 -180230860 - AluJb SINE Alu -178 134 1 199 77 26 26 chr4 4058129 4058168 -180230494 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 24 0 0 0 chr4 4058531 4058555 -180230107 + GC_rich Low_complexity Low_complexity 1 24 0 514 291 17 17 chr4 4060204 4060383 -180228279 - MER58A DNA MER1_type 0 224 46 375 260 215 6 chr4 4060944 4061121 -180227541 + MIR SINE MIR 46 259 -3 583 265 133 0 chr4 4061489 4061685 -180226977 - MER58A DNA MER1_type -2 222 1 387 252 169 32 chr4 4061943 4062336 -180226326 + MLT1D LTR MaLR 18 463 -4 587 207 0 13 chr4 4063077 4063318 -180225344 + (CA)n Simple_repeat Simple_repeat 1 237 0 681 220 3 0 chr4 4063353 4063709 -180224953 + (CA)n Simple_repeat Simple_repeat 1 357 0 474 246 0 0 chr4 4063732 4063899 -180224763 + (CA)n Simple_repeat Simple_repeat 1 167 0 404 301 0 0 chr4 4063910 4064201 -180224461 + (CA)n Simple_repeat Simple_repeat 1 291 0 348 326 0 29 chr4 4064236 4064267 -180224395 + (CA)n Simple_repeat Simple_repeat 1 31 -136 1117 206 87 59 chr4 4064267 4064622 -180224040 + MLT1A1 LTR MaLR 1 365 0 348 326 0 29 chr4 4064622 4064762 -180223900 + (CA)n Simple_repeat Simple_repeat 31 167 0 25 31 0 0 chr4 4068716 4068748 -180219914 + GC_rich Low_complexity Low_complexity 1 32 0 42 20 0 0 chr4 4068823 4068872 -180219790 + GC_rich Low_complexity Low_complexity 1 49 0 225 316 25 0 chr4 4071575 4071654 -180217008 + MLT1J2 LTR MaLR 92 172 -278 1453 105 16 47 chr4 4071661 4071919 -180216743 + THE1B LTR MaLR 1 250 -114 11946 67 4 4 chr4 4071919 4073572 -180215090 - HERVL LTR ERVL -391 5263 3610 2694 122 21 0 chr4 4073572 4074000 -180214662 + LTR3b LTR ERVK 1 437 0 26808 56 4 8 chr4 4074008 4075774 -180212888 - HERVL-A1 LTR ERVL -2037 3617 1845 2448 81 0 0 chr4 4075774 4076084 -180212578 + AluY SINE Alu 1 310 -1 26808 56 4 8 chr4 4076084 4077949 -180210713 - HERVL-A1 LTR ERVL -3809 1845 1 3160 102 14 7 chr4 4077949 4078390 -180210272 - MLT2A1 LTR ERVL 0 444 1 678 155 0 49 chr4 4078402 4078544 -180210118 - MLT2A2 LTR ERVL -318 135 1 499 281 91 40 chr4 4078549 4078592 -180210070 + L1M4 LINE L1 3355 3394 -2752 2125 127 0 0 chr4 4078592 4078884 -180209778 - AluSg SINE Alu -16 294 3 499 281 91 40 chr4 4078884 4079214 -180209448 + L1M4 LINE L1 3394 3747 -2399 1534 192 3 79 chr4 4079508 4079744 -180208918 - MLT1B LTR MaLR -1 389 193 3297 166 92 7 chr4 4079744 4080329 -180208333 + LTR24C LTR ERV1 1 635 0 1534 192 3 79 chr4 4080329 4080483 -180208179 - MLT1B LTR MaLR -197 193 29 1493 150 108 0 chr4 4080489 4080749 -180207913 - AluJb SINE Alu -24 288 1 2221 122 0 0 chr4 4081057 4081506 -180207156 + AluSx SINE Alu 2 450 0 222 37 0 0 chr4 4081508 4081535 -180207127 + (GGGA)n Simple_repeat Simple_repeat 4 30 0 347 280 34 25 chr4 4083462 4083580 -180205082 + MIR SINE MIR 61 179 -83 197 132 79 0 chr4 4086395 4086433 -180202229 + MIR SINE MIR 106 146 -62 211 308 62 0 chr4 4086781 4086846 -180201816 + MIR SINE MIR 73 141 -67 212 116 93 0 chr4 4090533 4090576 -180198086 + L2 LINE L2 3003 3049 -223 212 305 11 0 chr4 4091466 4091561 -180197101 + G-rich Low_complexity Low_complexity 5 100 0 185 229 306 19 chr4 4091899 4092056 -180196606 + L2 LINE L2 2867 3068 -245 1900 136 85 25 chr4 4097805 4098159 -180190503 + THE1C LTR MaLR 1 375 0 288 263 11 65 chr4 4098567 4098753 -180189909 + (GGGTG)n Simple_repeat Simple_repeat 5 180 0 2338 101 0 0 chr4 4104429 4104736 -180183926 - AluSx SINE Alu 0 312 6 224 238 20 75 chr4 4105829 4105976 -180182686 + C-rich Low_complexity Low_complexity 3 141 0 272 255 0 81 chr4 4106292 4106453 -180182209 + C-rich Low_complexity Low_complexity 2 149 0 323 280 0 50 chr4 4106473 4106655 -180182007 + C-rich Low_complexity Low_complexity 3 175 0 215 324 34 34 chr4 4107828 4107976 -180180686 - MIR SINE MIR -80 182 35 456 254 56 8 chr4 4110563 4110689 -180177973 + MLT1H LTR MaLR 2 133 -416 193 313 45 0 chr4 4112038 4112105 -180176557 + L2 LINE L2 3184 3253 -19 200 132 57 132 chr4 4112523 4112576 -180176086 + MER5B DNA MER1_type 59 107 -71 1528 148 9 50 chr4 4112589 4112907 -180175755 - AluJo SINE Alu -2 310 6 1452 127 51 82 chr4 4112926 4113094 -180175568 - AluSx SINE Alu 0 310 154 2284 97 0 0 chr4 4113094 4113392 -180175270 - AluSx SINE Alu -14 298 1 1452 127 51 82 chr4 4113392 4113542 -180175120 - AluSx SINE Alu -156 154 1 300 205 64 26 chr4 4114513 4114591 -180174071 + L1ME4a LINE L1 6035 6115 -6 239 247 49 12 chr4 4118407 4118488 -180170174 - L2 LINE L2 -3 3310 3227 240 318 87 8 chr4 4121188 4121314 -180167348 + L1P LINE L1 4956 5091 -1055 858 144 81 58 chr4 4122003 4122177 -180166485 + AluJo SINE Alu 50 227 -85 259 313 55 8 chr4 4125768 4125896 -180162766 - MER58A DNA MER1_type 0 136 3 1154 241 148 66 chr4 4126452 4127221 -180161441 - L1MC4 LINE L1 0 8042 7129 1600 276 122 21 chr4 4127282 4127913 -180160749 - L1MC4 LINE L1 -965 7077 6383 704 245 107 28 chr4 4128169 4128422 -180160240 - MER115 DNA AcHobo -11 682 410 242 333 72 9 chr4 4128802 4128913 -180159749 - MIR3 SINE MIR -48 160 43 25 0 0 0 chr4 4130137 4130162 -180158500 + AT_rich Low_complexity Low_complexity 1 25 0 488 275 85 68 chr4 4131305 4131541 -180157121 - L1M4 LINE L1 -1897 4249 4010 324 194 6 56 chr4 4131610 4131770 -180156892 + (TAA)n Simple_repeat Simple_repeat 1 152 0 234 310 0 0 chr4 4131834 4131905 -180156757 - L1M4 LINE L1 -2213 3933 3863 265 264 0 35 chr4 4131917 4132004 -180156658 + L2 LINE L2 3227 3310 -3 367 351 49 9 chr4 4132027 4132252 -180156410 - L1M4 LINE L1 -2309 3837 3604 640 297 100 20 chr4 4132328 4132628 -180156034 + MLT1I LTR MaLR 86 409 0 797 130 73 0 chr4 4132895 4133018 -180155644 - AluJb SINE Alu -179 133 2 542 342 59 5 chr4 4133064 4133661 -180155001 - L1M4 LINE L1 -2969 3177 2549 348 264 88 83 chr4 4133747 4133879 -180154783 - L1M4 LINE L1 -3757 2389 2254 604 192 14 110 chr4 4133879 4134025 -180154637 - FLAM_A SINE Alu 0 133 2 348 264 88 83 chr4 4134025 4134108 -180154554 - L1M4 LINE L1 -3892 2254 2173 637 281 130 34 chr4 4134222 4134460 -180154202 - MIR SINE MIR 0 262 2 862 270 64 19 chr4 4134523 4134834 -180153828 + L2 LINE L2 2151 2475 -839 184 241 76 0 chr4 4134875 4134954 -180153708 + L2 LINE L2 2028 2112 -1202 1765 280 95 30 chr4 4135586 4136181 -180152481 + L1ME3A LINE L1 4628 5183 -987 1401 192 74 62 chr4 4136181 4136520 -180152142 - MER2 DNA MER2_type 0 344 2 1765 280 95 30 chr4 4136520 4137137 -180151525 + L1ME3A LINE L1 5183 5952 -218 1700 139 36 53 chr4 4137137 4137318 -180151344 - AluSx SINE Alu -14 298 122 204 111 0 0 chr4 4137318 4137354 -180151308 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1700 139 36 53 chr4 4137354 4137475 -180151187 - AluSx SINE Alu -190 122 1 1765 280 95 30 chr4 4137475 4137704 -180150958 + L1ME3A LINE L1 5952 6165 -5 2089 139 0 0 chr4 4137899 4138202 -180150460 + AluSx SINE Alu 1 303 -9 616 288 106 12 chr4 4138710 4139116 -180149546 + L1MEd LINE L1 110 553 -5843 552 275 61 77 chr4 4139193 4139360 -180149302 + L1MEc LINE L1 790 958 -5438 2040 108 14 0 chr4 4139360 4139655 -180149007 - AluSx SINE Alu -13 299 1 552 275 61 77 chr4 4139655 4139981 -180148681 + L1MEc LINE L1 958 1275 -5121 315 223 39 10 chr4 4139991 4140094 -180148568 + L1MEc LINE L1 1355 1460 -4936 295 273 136 9 chr4 4140408 4140518 -180148144 - L1ME3A LINE L1 -3 6167 6044 232 336 18 26 chr4 4141611 4141724 -180146938 - MIR SINE MIR -73 135 24 272 289 90 19 chr4 4142956 4143112 -180145550 - L3 LINE CR1 -148 1429 1263 213 148 0 49 chr4 4144101 4144162 -180144500 + (TCCC)n Simple_repeat Simple_repeat 1 58 0 2131 112 3 0 chr4 4147914 4148210 -180140452 + AluSx SINE Alu 1 297 -15 1503 180 25 3 chr4 4148755 4149038 -180139624 - AluJo SINE Alu -19 293 5 422 309 65 10 chr4 4149287 4149722 -180138940 + L1MEd LINE L1 695 1174 -5031 2426 114 44 6 chr4 4150595 4150956 -180137706 + THE1C LTR MaLR 1 375 0 10469 120 39 6 chr4 4150956 4152485 -180136177 + THE1C-int LTR MaLR 1 1580 0 2520 129 27 3 chr4 4152486 4152851 -180135811 + THE1C LTR MaLR 2 375 0 4074 165 93 25 chr4 4152870 4153321 -180135341 - L1MA9 LINE L1 -46 6266 5847 279 0 0 0 chr4 4153321 4153352 -180135310 + (CA)n Simple_repeat Simple_repeat 2 32 0 4074 165 93 25 chr4 4153352 4154135 -180134527 - L1MA9 LINE L1 -465 5847 4950 1337 146 5 0 chr4 4154987 4155193 -180133469 + AluJ SINE Alu 1 207 -105 694 108 0 0 chr4 4155254 4155347 -180133315 + AluJ SINE Alu 209 301 -11 231 339 28 18 chr4 4155609 4155718 -180132944 - MER112 DNA MER1_type 0 260 151 270 0 0 0 chr4 4156064 4156094 -180132568 + (TG)n Simple_repeat Simple_repeat 2 31 0 186 188 0 38 chr4 4156564 4156644 -180132018 + (CTGGGG)n Simple_repeat Simple_repeat 3 79 0 421 297 189 26 chr4 4157092 4157435 -180131227 - L2 LINE L2 -670 2644 2246 315 187 66 0 chr4 4260771 4260862 -180027800 - MER96B DNA MER1_type? -62 355 259 643 163 0 0 chr4 4260863 4260961 -180027701 - AluSg/x SINE Alu -9 303 206 2122 122 0 0 chr4 4260962 4261256 -180027406 - AluSx SINE Alu -18 294 1 888 122 0 36 chr4 4261259 4261398 -180027264 - AluJb SINE Alu -178 134 1 199 77 26 26 chr4 4261725 4261764 -180026898 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 24 0 0 0 chr4 4262127 4262151 -180026511 + GC_rich Low_complexity Low_complexity 1 24 0 502 297 16 16 chr4 4263678 4263863 -180024799 - MER58A DNA MER1_type 0 224 40 357 273 209 5 chr4 4264411 4264598 -180024064 + MIR SINE MIR 35 259 -3 569 270 133 0 chr4 4264966 4265162 -180023500 - MER58A DNA MER1_type -2 222 1 379 261 161 33 chr4 4265420 4265819 -180022843 + MLT1C LTR MaLR 18 463 -4 663 245 3 0 chr4 4266560 4267706 -180020956 + (CA)n Simple_repeat Simple_repeat 1 1149 0 320 337 0 29 chr4 4267741 4267772 -180020890 + (CA)n Simple_repeat Simple_repeat 1 31 -136 1116 206 87 59 chr4 4267772 4268127 -180020535 + MLT1A1 LTR MaLR 1 365 0 320 337 0 29 chr4 4268127 4268267 -180020395 + (CA)n Simple_repeat Simple_repeat 31 167 0 8364 147 32 12 chr4 4372230 4373602 -179915060 + MER52A LTR ERV1 375 1755 0 188 250 132 13 chr4 4373834 4373910 -179914752 + MIR SINE MIR 161 245 -17 221 329 12 0 chr4 4374146 4374231 -179914431 - L2 LINE L2 -2 3270 3185 1348 178 15 118 chr4 4374456 4374633 -179914029 - AluJb SINE Alu -5 297 103 2216 64 4 4 chr4 4374633 4374914 -179913748 - AluSp SINE Alu -32 281 1 1942 116 0 47 chr4 4374918 4375100 -179913562 - AluSx SINE Alu -7 305 143 2182 88 17 3 chr4 4375100 4375397 -179913265 - AluY SINE Alu -10 301 1 1942 116 0 47 chr4 4375397 4375534 -179913128 - AluSx SINE Alu -169 143 1 1348 178 15 118 chr4 4375534 4375682 -179912980 - AluJb SINE Alu -202 100 1 352 248 9 28 chr4 4376325 4376434 -179912228 + L1 LINE L1 5174 5280 -866 1055 265 41 32 chr4 4376457 4376869 -179911793 + MLT1J1 LTR MaLR 68 446 0 2139 116 6 0 chr4 4377406 4377717 -179910945 + AluSp SINE Alu 1 313 0 513 133 20 10 chr4 4377806 4377904 -179910758 - LTR54 LTR ERV1 -2 508 410 1136 171 46 0 chr4 4377904 4378121 -179910541 + AluJo SINE Alu 86 312 0 216 158 0 0 chr4 4378130 4378168 -179910494 + GA-rich Low_complexity Low_complexity 1 38 0 1399 139 62 9 chr4 4378168 4378527 -179910135 - LTR54 LTR ERV1 -94 413 1 2260 77 0 0 chr4 4379036 4379322 -179909340 - AluSc SINE Alu -23 286 1 370 209 97 75 chr4 4379484 4379553 -179909109 + MLT1J2 LTR MaLR 59 125 -325 612 150 18 9 chr4 4379553 4379666 -179908996 + L1PB2 LINE L1 6037 6150 -1 370 209 97 75 chr4 4379666 4379730 -179908932 + MLT1J2 LTR MaLR 125 195 -255 370 233 125 33 chr4 4379749 4379869 -179908793 + L2 LINE L2 3141 3271 -1 218 287 32 43 chr4 4379867 4379961 -179908701 - MIR SINE MIR -157 105 13 * 192 40 0 0 chr4 4379961 4379986 -179908676 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 756 231 84 48 chr4 4379986 4380199 -179908463 - L2 LINE L2 -13 3300 3075 763 167 24 0 chr4 4380199 4380325 -179908337 + FLAM_A SINE Alu 1 129 -4 756 231 84 48 chr4 4380325 4380362 -179908300 - L2 LINE L2 -238 3075 3041 1225 303 206 7 chr4 4380395 4381240 -179907422 - L2 LINE L2 -408 2906 1894 1850 158 0 0 chr4 4381310 4381601 -179907061 + AluJb SINE Alu 1 291 -21 2133 186 34 36 chr4 4382267 4382735 -179905927 + MLT1C LTR MaLR 1 467 0 265 232 0 18 chr4 4382857 4382913 -179905749 - L2 LINE L2 0 3313 3259 1821 87 0 4 chr4 4383375 4383617 -179905045 + AluY SINE Alu 1 241 -70 2205 82 0 0 chr4 4384154 4384472 -179904190 + AluSp SINE Alu 1 318 0 2201 90 7 3 chr4 4385238 4385538 -179903124 - AluSg SINE Alu -9 301 1 2056 98 7 3 chr4 4385862 4386159 -179902503 - AluSx SINE Alu -14 298 1 569 316 14 28 chr4 4386160 4386375 -179902287 - MIR SINE MIR -4 258 47 1009 170 0 0 chr4 4386644 4386815 -179901847 - FAM SINE Alu -5 44 1 641 240 112 11 chr4 4387256 4387435 -179901227 + MIR SINE MIR 3 199 -63 930 194 0 21 chr4 4387451 4387642 -179901020 - AluJo SINE Alu -2 310 124 1683 153 50 0 chr4 4387901 4388183 -179900479 - AluJb SINE Alu -16 296 1 2211 91 3 3 chr4 4388285 4388583 -179900079 - AluSp SINE Alu -15 298 1 195 287 96 11 chr4 4388614 4388708 -179899954 - MIR3 SINE MIR -47 161 60 1823 114 13 24 chr4 4388842 4389160 -179899502 - AluSx SINE Alu 0 312 1 2639 125 13 47 chr4 4389797 4390245 -179898417 + Tigger2a DNA MER2_type 1 433 -1 1872 76 76 8 chr4 4390662 4390926 -179897736 + AluSq SINE Alu 1 282 -31 192 40 0 0 chr4 4390926 4390951 -179897711 + (CAAAC)n Simple_repeat Simple_repeat 5 29 0 2679 147 39 30 chr4 4390963 4391191 -179897471 + L1MB2 LINE L1 5655 5879 -292 2007 121 3 3 chr4 4391191 4391489 -179897173 + AluSx SINE Alu 1 298 -14 2679 147 39 30 chr4 4391489 4391769 -179896893 + L1MB2 LINE L1 5879 6168 -3 610 167 0 0 chr4 4391868 4391970 -179896692 - AluJb SINE Alu -76 236 135 1030 127 6 0 chr4 4391971 4392129 -179896533 - AluSg/x SINE Alu -23 287 129 976 195 0 61 chr4 4392128 4392359 -179896303 - AluJb SINE Alu -95 217 1 * 438 277 43 14 chr4 4392521 4392662 -179896000 - L1ME LINE L1 -460 5661 5517 2178 88 3 3 chr4 4393014 4393311 -179895351 + AluSq SINE Alu 1 297 -16 273 57 0 0 chr4 4393325 4393360 -179895302 + (TG)n Simple_repeat Simple_repeat 2 36 0 248 221 47 0 chr4 4393382 4393468 -179895194 - L1MC4 LINE L1 -1339 6703 6614 380 264 6 10 chr4 4393478 4393574 -179895088 - L1MC4 LINE L1 -1339 6983 1995 2228 96 6 16 chr4 4393813 4394125 -179894537 + AluSc SINE Alu 1 309 0 181 273 23 0 chr4 4394184 4394228 -179894434 - L2 LINE L2 -46 3267 3223 21 36 0 0 chr4 4394368 4394396 -179894266 + AT_rich Low_complexity Low_complexity 1 28 0 5442 183 25 58 chr4 4394690 4395208 -179893454 - L1ME LINE L1 -830 5316 4782 1704 190 20 42 chr4 4395208 4395613 -179893049 + MSTD LTR MaLR 1 396 0 5442 183 25 58 chr4 4395613 4396304 -179892358 - L1ME LINE L1 -1364 4782 4069 2015 117 7 3 chr4 4396304 4396603 -179892059 - AluSx SINE Alu -10 302 3 5442 183 25 58 chr4 4396603 4396749 -179891913 - L1ME LINE L1 -2077 4069 4055 2116 128 0 0 chr4 4396749 4397053 -179891609 - AluSg SINE Alu -6 304 1 5442 183 25 58 chr4 4397053 4397119 -179891543 - L1ME LINE L1 -2091 4055 3988 315 232 192 40 chr4 4397154 4397279 -179891383 + MSTC LTR MaLR 1 144 -284 707 225 16 16 chr4 4397283 4397470 -179891192 - L1 LINE L1 -2187 3959 3773 523 141 0 0 chr4 4397664 4397742 -179890920 - AluJ/FLAM SINE Alu -233 79 2 600 200 140 93 chr4 4398016 4398112 -179890550 + MSTD LTR MaLR 1 91 -305 2140 105 0 0 chr4 4398112 4398408 -179890254 - AluSx SINE Alu -16 296 1 600 200 140 93 chr4 4398408 4398585 -179890077 + MSTD LTR MaLR 91 282 -114 979 249 50 80 chr4 4398602 4398993 -179889669 + LTR56 LTR ERV1 9 381 -56 1912 120 17 40 chr4 4398993 4399294 -179889368 - AluSx SINE Alu -18 294 1 979 249 50 80 chr4 4399294 4399350 -179889312 + LTR56 LTR ERV1 381 437 0 483 142 14 177 chr4 4399350 4399426 -179889236 + MSTD LTR MaLR 281 326 -70 3497 94 2 0 chr4 4399426 4399902 -179888760 + L1PA13 LINE L1 5684 6160 -3 483 142 14 177 chr4 4399902 4399964 -179888698 + MSTD LTR MaLR 326 396 0 1901 161 0 0 chr4 4400170 4400480 -179888182 + AluSx SINE Alu 1 310 -2 699 215 17 29 chr4 4400817 4400978 -179887684 + MIR SINE MIR 52 212 -50 2054 132 3 0 chr4 4400978 4401289 -179887373 - AluSx SINE Alu 0 312 1 1583 197 0 10 chr4 4401693 4401982 -179886680 - AluJb SINE Alu -26 286 1 1684 155 10 17 chr4 4401986 4402283 -179886379 - AluJo SINE Alu -17 295 1 900 149 0 8 chr4 4402503 4402637 -179886025 + FLAM_A SINE Alu 1 133 0 1979 130 0 3 chr4 4402869 4403169 -179885493 + AluSx SINE Alu 1 299 -13 1629 193 15 46 chr4 4403251 4403644 -179885018 + MLT2C1 LTR ERVL 17 397 0 189 287 96 32 chr4 4403657 4403751 -179884911 - L2 LINE L2 -18 3254 3155 2281 105 0 0 chr4 4404124 4404437 -179884225 + AluSq SINE Alu 1 313 0 23 68 0 0 chr4 4404551 4404595 -179884067 + AT_rich Low_complexity Low_complexity 1 44 0 898 131 0 115 chr4 4405081 4405272 -179883390 + AluSg/x SINE Alu 136 304 -8 2092 76 14 7 chr4 4405487 4405778 -179882884 - AluSc SINE Alu -16 293 1 180 0 0 0 chr4 4406085 4406105 -179882557 + (TTG)n Simple_repeat Simple_repeat 2 21 0 595 118 20 29 chr4 4406107 4406209 -179882453 - AluSg/x SINE Alu -27 285 185 1569 163 62 14 chr4 4406209 4406576 -179882086 + L1M3 LINE L1 5241 5624 -550 2192 146 0 0 chr4 4406579 4406887 -179881775 - AluSx SINE Alu -4 308 1 1053 97 8 0 chr4 4406888 4407022 -179881640 - AluSq/x SINE Alu -178 135 1 842 189 12 0 chr4 4407022 4407191 -179881471 + L1M3 LINE L1 5625 5795 -388 248 141 188 0 chr4 4407196 4407260 -179881402 + L1MB3 LINE L1 6101 6176 -7 2349 148 69 29 chr4 4407264 4407744 -179880918 + L1MB8 LINE L1 5679 6177 -1 2392 85 3 3 chr4 4408027 4408332 -179880330 + AluSc SINE Alu 1 305 -4 373 336 118 0 chr4 4408403 4408632 -179880030 + L1MC/D LINE L1 5386 5641 -2167 349 370 81 6 chr4 4408649 4408674 -179879988 - L1MC4a LINE L1 -1901 5907 5885 2244 79 48 3 chr4 4408674 4408965 -179879697 - AluY SINE Alu -7 304 1 349 370 81 6 chr4 4408965 4409112 -179879550 - L1MC4a LINE L1 -1923 5885 5722 720 200 8 0 chr4 4409132 4409257 -179879405 - FLAM_A SINE Alu -7 126 1 2130 80 42 7 chr4 4409264 4409552 -179879110 - AluY SINE Alu -13 298 1 920 151 0 0 chr4 4409739 4409865 -179878797 + FLAM_C SINE Alu 4 129 -14 766 246 111 63 chr4 4410465 4410578 -179878084 - L2 LINE L2 -4 3309 3203 1985 121 48 58 chr4 4410578 4410957 -179877705 + THE1C LTR MaLR 1 375 0 766 246 111 63 chr4 4410957 4411177 -179877485 - L2 LINE L2 -110 3203 2960 231 281 112 0 chr4 4411664 4411753 -179876909 + L2 LINE L2 2315 2413 -901 222 333 16 0 chr4 4411754 4411817 -179876845 - L2 LINE L2 0 3272 3209 669 178 60 19 chr4 4412440 4412628 -179876034 + MER52A LTR ERV1 217 538 -740 976 214 25 79 chr4 4412645 4412963 -179875699 + AluJo SINE Alu 2 302 0 391 391 41 10 chr4 4413019 4413216 -179875446 + L1MEc LINE L1 199 401 -5995 334 243 37 19 chr4 4413321 4413428 -179875234 - L1MC4a LINE L1 -1870 5938 5830 1766 170 3 10 chr4 4414223 4414512 -179874150 + AluJo SINE Alu 5 291 -21 368 188 0 0 chr4 4415167 4415231 -179873431 + FLAM_A SINE Alu 1 64 -68 234 294 165 9 chr4 4415242 4415351 -179873311 - L2 LINE L2 -2 3270 3145 1314 147 20 12 chr4 4416147 4416399 -179872263 + MER2 DNA MER2_type 35 288 -57 352 239 14 0 chr4 4416434 4416505 -179872157 + MER2 DNA MER2_type 273 344 -1 2010 108 52 7 chr4 4416902 4417189 -179871473 + AluSx SINE Alu 1 300 -12 731 261 51 4 chr4 4417920 4418154 -179870508 - L1MC4a LINE L1 -619 5545 5301 204 40 0 0 chr4 4418158 4418183 -179870479 + (CA)n Simple_repeat Simple_repeat 1 25 0 1492 242 98 68 chr4 4418188 4418311 -179870351 - L1MC4a LINE L1 -1538 4608 4490 2341 100 0 3 chr4 4418311 4418612 -179870050 - AluSx SINE Alu -12 300 1 1492 242 98 68 chr4 4418612 4418694 -179869968 - L1MC4a LINE L1 -1656 4490 4412 815 160 0 0 chr4 4418694 4418819 -179869843 - FLAM_A SINE Alu -7 126 2 1492 242 98 68 chr4 4418819 4418997 -179869665 - L1MC4a LINE L1 -1734 4412 4241 853 132 0 29 chr4 4418997 4419133 -179869529 + FLAM_C SINE Alu 1 132 -1 1492 242 98 68 chr4 4419133 4419550 -179869112 - L1MC4a LINE L1 -1905 4241 3782 23 0 0 0 chr4 4419704 4419727 -179868935 + AT_rich Low_complexity Low_complexity 1 23 0 351 322 136 12 chr4 4419983 4420225 -179868437 - L2 LINE L2 -482 2832 2561 1131 166 6 0 chr4 4420481 4420656 -179868006 - AluJb SINE Alu -3 309 134 2089 82 36 52 chr4 4420656 4420961 -179867701 - AluSg SINE Alu -10 300 1 847 147 0 0 chr4 4421439 4421555 -179867107 + FLAM_C SINE Alu 2 117 -16 2262 95 0 14 chr4 4421560 4421854 -179866808 - AluSx SINE Alu -22 290 1 320 272 44 33 chr4 4421989 4422169 -179866493 - L1MC5 LINE L1 -48 7913 7732 251 172 198 43 chr4 4422175 4422291 -179866371 - L1ME4a LINE L1 -6 6115 5982 257 274 174 26 chr4 4422612 4422802 -179865860 - MIR SINE MIR -33 229 12 28 29 0 0 chr4 4423261 4423296 -179865366 + AT_rich Low_complexity Low_complexity 1 35 0 862 128 0 0 chr4 4423296 4423413 -179865249 - FLAM_C SINE Alu -15 118 2 5658 111 72 42 chr4 4423642 4424505 -179864157 - LTR13 LTR ERVK -12 995 97 2514 46 0 0 chr4 4424505 4424824 -179863838 - AluY SINE Alu 0 319 1 5658 111 72 42 chr4 4424824 4424925 -179863737 - LTR13 LTR ERVK -910 97 1 748 86 23 31 chr4 4424966 4425094 -179863568 + LTR54B LTR ERV1 5 131 -367 1207 72 63 31 chr4 4425094 4425306 -179863356 + MER57B-int LTR ERV1 7279 7537 0 2900 118 18 18 chr4 4425306 4425740 -179862922 + MER57B LTR ERV1 1 434 0 1867 224 54 17 chr4 4425854 4426372 -179862290 + MER72 LTR ERV1 12 548 -174 3951 159 99 38 chr4 4426382 4427193 -179861469 - MER21B LTR ERV1 -1 862 3 1808 119 79 0 chr4 4427227 4427504 -179861158 + AluSx SINE Alu 1 299 -13 735 108 0 0 chr4 4427651 4427753 -179860909 - U6 snRNA snRNA -5 102 1 4312 117 11 17 chr4 4428093 4428545 -179860117 - MER41B LTR ERV1 0 635 187 1819 127 92 0 chr4 4428545 4428829 -179859833 - AluSx SINE Alu -2 310 1 4312 117 11 17 chr4 4428829 4429015 -179859647 - MER41B LTR ERV1 -448 187 1 285 343 66 15 chr4 4429297 4429434 -179859228 - MIR SINE MIR -11 251 108 2109 123 0 0 chr4 4431415 4431726 -179856936 - AluSx SINE Alu 0 311 1 2446 109 0 0 chr4 4432158 4432471 -179856191 - AluSq SINE Alu 0 313 1 2377 100 0 0 chr4 4432652 4432953 -179855709 - AluSx SINE Alu -11 301 1 2374 90 0 10 chr4 4433953 4434254 -179854408 - AluSg SINE Alu -12 298 1 276 53 0 0 chr4 4434280 4434318 -179854344 + (CA)n Simple_repeat Simple_repeat 2 39 0 525 32 0 0 chr4 4434785 4434848 -179853814 + (CA)n Simple_repeat Simple_repeat 1 63 0 971 190 28 6 chr4 4435772 4435951 -179852711 + AluJo SINE Alu 1 183 -129 779 122 7 58 chr4 4436171 4436310 -179852352 + FLAM_C SINE Alu 2 133 0 2336 65 41 0 chr4 4436627 4436917 -179851745 - AluY SINE Alu -9 302 1 377 202 131 20 chr4 4437470 4437569 -179851093 + MER58B DNA MER1_type 232 341 0 266 241 167 19 chr4 4437857 4437965 -179850697 + L2 LINE L2 3142 3265 -7 2146 114 3 25 chr4 4438008 4438324 -179850338 + AluSc SINE Alu 1 309 0 1491 185 18 78 chr4 4438433 4438654 -179850008 + MLT1A1 LTR MaLR 5 195 -170 775 174 0 36 chr4 4438654 4438792 -179849870 - FLAM_C SINE Alu 0 133 1 1491 185 18 78 chr4 4438792 4438954 -179849708 + MLT1A1 LTR MaLR 195 365 0 471 236 19 0 chr4 4439118 4439224 -179849438 - MIR SINE MIR -48 214 107 471 76 0 0 chr4 4439446 4439512 -179849150 - AluSc SINE Alu -6 303 238 1314 106 22 0 chr4 4439513 4439693 -179848969 - AluSq SINE Alu -129 184 1 722 284 222 16 chr4 4440044 4440801 -179847861 + L2 LINE L2 719 1631 -1683 348 257 119 95 chr4 4440831 4441201 -179847461 + L2 LINE L2 2522 2900 -414 528 173 29 29 chr4 4441359 4441463 -179847199 + L2 LINE L2 3210 3313 0 253 191 0 0 chr4 4442781 4442823 -179845839 + L1MB7 LINE L1 5834 5875 -293 2226 125 0 0 chr4 4442823 4443120 -179845542 + AluSx SINE Alu 1 297 -15 698 177 0 0 chr4 4443120 4443250 -179845412 + L1MB7 LINE L1 6054 6183 -1 376 281 70 12 chr4 4443579 4443750 -179844912 + MIR3 SINE MIR 9 189 -19 1699 172 37 24 chr4 4444549 4444846 -179843816 + AluJb SINE Alu 1 301 -11 402 283 9 44 chr4 4444895 4445008 -179843654 + L2 LINE L2 3164 3272 0 297 232 43 0 chr4 4445184 4445253 -179843409 + MIR SINE MIR 8 79 -183 1003 105 0 0 chr4 4445315 4445448 -179843214 - FLAM_C SINE Alu 0 133 1 1078 223 92 4 chr4 4445549 4445822 -179842840 + L1MC4a LINE L1 5411 5707 -2101 489 290 103 51 chr4 4445915 4446205 -179842457 + L1MC4a LINE L1 5824 6098 -1710 2604 36 3 10 chr4 4446205 4446508 -179842154 + AluY SINE Alu 1 301 -10 489 290 103 51 chr4 4446508 4446606 -179842056 + L1MC4a LINE L1 6098 6190 -1618 2364 120 0 0 chr4 4446606 4446907 -179841755 - AluSx SINE Alu -11 301 1 489 290 103 51 chr4 4446907 4446998 -179841664 + L1MC4a LINE L1 6190 6372 -1436 180 0 0 0 chr4 4447002 4447022 -179841640 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2223 100 7 0 chr4 4447024 4447305 -179841357 - AluSx SINE Alu -16 296 14 712 215 130 14 chr4 4447312 4447535 -179841127 + L1MB3 LINE L1 5934 6182 -1 2283 91 40 0 chr4 4447543 4447840 -179840822 + AluY SINE Alu 1 309 -2 2205 94 49 0 chr4 4447882 4448170 -179840492 + AluSp SINE Alu 3 304 -9 181 381 48 0 chr4 4449145 4449229 -179839433 - L2 LINE L2 0 3272 3185 1661 202 10 10 chr4 4449321 4449628 -179839034 - AluJo SINE Alu -5 307 1 348 290 65 0 chr4 4449635 4449742 -179838920 - MIR SINE MIR -117 145 32 396 294 28 28 chr4 4449748 4449925 -179838737 + MER104 DNA MER2_type 1 177 -3 2098 111 24 0 chr4 4450584 4450881 -179837781 + AluSx SINE Alu 1 304 -8 2429 93 0 3 chr4 4450974 4451285 -179837377 - AluY SINE Alu -1 310 1 2226 122 0 3 chr4 4451314 4451610 -179837052 - AluSx SINE Alu -17 295 1 845 147 0 0 chr4 4451687 4451823 -179836839 + AluSg/x SINE Alu 174 309 -1 2458 149 99 62 chr4 4451824 4452388 -179836274 - L1MD2 LINE L1 -291 6068 5484 459 0 0 0 chr4 4452428 4452479 -179836183 + (TG)n Simple_repeat Simple_repeat 2 52 0 1549 170 24 35 chr4 4452482 4452771 -179835891 - AluJo SINE Alu -26 286 1 476 267 182 15 chr4 4452822 4453099 -179835563 + L2 LINE L2 2784 3104 -209 282 304 236 20 chr4 4453344 4453492 -179835170 - MER5A DNA MER1_type 0 189 10 379 296 127 55 chr4 4453845 4454098 -179834564 + L1ME4a LINE L1 5840 6110 -11 2476 74 6 3 chr4 4454152 4454463 -179834199 + AluSp SINE Alu 1 312 -1 1223 183 70 4 chr4 4454518 4454791 -179833871 + MER58B DNA MER1_type 43 333 -8 3621 188 37 1 chr4 4454791 4455584 -179833078 + L1M4 LINE L1 4517 5337 -809 2290 126 0 0 chr4 4455615 4455916 -179832746 + AluSq SINE Alu 1 301 -12 1049 270 77 38 chr4 4456086 4456564 -179832098 + L2 LINE L2 2503 3012 -301 922 187 5 20 chr4 4456564 4456762 -179831900 + FRAM SINE Alu 1 170 -6 203 191 24 0 chr4 4456767 4456809 -179831853 + L2 LINE L2 3032 3074 -239 1679 154 0 45 chr4 4456814 4456959 -179831703 + AluSx SINE Alu 1 128 -184 2282 67 0 54 chr4 4456959 4457274 -179831388 + AluY SINE Alu 1 298 -13 1679 154 0 45 chr4 4457274 4457414 -179831248 + AluSx SINE Alu 128 273 -39 224 59 29 0 chr4 4457421 4457455 -179831207 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 426 98 16 0 chr4 4457467 4457528 -179831134 + U7 snRNA snRNA 2 63 0 23 0 0 0 chr4 4457531 4457554 -179831108 + AT_rich Low_complexity Low_complexity 1 23 0 705 233 93 23 chr4 4457570 4457785 -179830877 + L2 LINE L2 3084 3313 0 21 57 0 0 chr4 4458204 4458239 -179830423 + AT_rich Low_complexity Low_complexity 1 35 0 2116 119 0 0 chr4 4458292 4458578 -179830084 + AluSg SINE Alu 1 286 -24 2132 109 0 0 chr4 4458824 4459109 -179829553 - AluSx SINE Alu -22 290 6 183 100 0 0 chr4 4460956 4460986 -179827676 + (CGGGGG)n Simple_repeat Simple_repeat 4 33 0 261 198 0 0 chr4 4460988 4461069 -179827593 + (CGG)n Simple_repeat Simple_repeat 3 83 0 528 16 0 0 chr4 4461069 4461130 -179827532 + (CTG)n Simple_repeat Simple_repeat 1 61 0 28 61 0 0 chr4 4461354 4461403 -179827259 + GC_rich Low_complexity Low_complexity 1 49 0 377 275 0 53 chr4 4461552 4461741 -179826921 + (CGGGG)n Simple_repeat Simple_repeat 1 179 0 197 62 0 31 chr4 4461752 4461784 -179826878 + (CGGGG)n Simple_repeat Simple_repeat 4 34 0 194 209 0 31 chr4 4461819 4461948 -179826714 + (CGGGG)n Simple_repeat Simple_repeat 5 129 0 784 144 24 8 chr4 4462945 4463070 -179825592 + FRAM SINE Alu 28 154 -22 2186 98 10 3 chr4 4463084 4463380 -179825282 + AluSx SINE Alu 6 303 -9 1319 247 122 19 chr4 4463454 4463931 -179824731 + MLT1E LTR MaLR 8 533 -60 2241 156 48 0 chr4 4464021 4464393 -179824269 - MLT1B LTR MaLR 0 390 1 908 258 124 34 chr4 4464404 4464846 -179823816 + MLT1J LTR MaLR 17 498 -13 2220 102 3 0 chr4 4465422 4465726 -179822936 + AluSx SINE Alu 6 310 -2 344 245 39 10 chr4 4465749 4465851 -179822811 + L1ME4a LINE L1 5998 6102 -19 315 347 47 40 chr4 4466380 4466530 -179822132 - L1MEd LINE L1 -3950 2179 2029 1954 128 0 33 chr4 4466551 4466857 -179821805 + AluSx SINE Alu 1 296 -16 662 323 72 32 chr4 4466876 4467053 -179821609 - L1MEd LINE L1 -4320 1990 1822 2023 146 0 0 chr4 4467053 4467354 -179821308 + AluSx SINE Alu 1 301 -11 662 323 72 32 chr4 4467354 4467674 -179820988 - L1MEd LINE L1 -4488 1822 1458 2560 55 0 3 chr4 4467674 4467984 -179820678 - AluY SINE Alu -2 309 1 662 323 72 32 chr4 4467984 4468139 -179820523 - L1MEd LINE L1 -4852 1458 1311 457 312 73 65 chr4 4468601 4469334 -179819328 - L1MEd LINE L1 -4864 1255 540 2177 92 0 0 chr4 4469544 4469828 -179818834 + AluSc SINE Alu 5 288 -21 2114 196 56 0 chr4 4470070 4470463 -179818199 + MER47B DNA MER2_type 2 416 -2 599 100 260 0 chr4 4470496 4470596 -179818066 + AluSg SINE Alu 6 131 -179 2088 116 3 22 chr4 4470596 4470907 -179817755 + AluSq SINE Alu 5 309 -4 583 298 109 12 chr4 4470907 4471236 -179817426 + L1MC/D LINE L1 4829 5189 -957 226 248 17 94 chr4 4471236 4471353 -179817309 + L1MEc LINE L1 39 146 -6250 315 296 82 25 chr4 4473897 4474140 -179814522 - MLT2E LTR ERVL -338 290 34 2180 87 0 14 chr4 4474447 4474734 -179813928 - AluSx SINE Alu -17 295 13 2008 118 26 3 chr4 4474888 4475194 -179813468 - AluSp SINE Alu 0 313 1 2632 26 0 3 chr4 4475205 4475512 -179813150 - AluY SINE Alu -5 306 1 458 167 67 0 chr4 4475872 4475992 -179812670 - L1PA12 LINE L1 -115 6053 5926 1770 166 7 0 chr4 4476093 4476404 -179812258 - AluJo SINE Alu 0 312 1 305 302 54 11 chr4 4476501 4476613 -179812049 + L1MC/D LINE L1 5550 5666 -476 2974 175 39 24 chr4 4476614 4476797 -179811865 + L1MB3 LINE L1 5585 5764 -419 1864 162 3 3 chr4 4476797 4477100 -179811562 + AluJb SINE Alu 1 303 -9 2974 175 39 24 chr4 4477100 4477462 -179811200 + L1MB3 LINE L1 5764 6142 -41 2344 86 0 0 chr4 4477462 4477775 -179810887 + AluSq SINE Alu 1 313 0 2974 175 39 24 chr4 4477775 4477818 -179810844 + L1MB3 LINE L1 6142 6183 0 665 309 62 7 chr4 4477818 4478122 -179810540 + L1MC4a LINE L1 4650 4970 -1176 245 169 51 0 chr4 4478143 4478202 -179810460 - HAL1 LINE L1 -420 2087 2026 398 353 77 32 chr4 4478219 4478440 -179810222 + L1MC4a LINE L1 5668 5898 -1910 247 345 52 17 chr4 4479878 4480052 -179808610 + L2 LINE L2 3079 3258 -55 3879 229 113 66 chr4 4480256 4481130 -179807532 + Charlie1a DNA MER1_type 1 833 -1928 2162 58 0 81 chr4 4481130 4481440 -179807222 + AluY SINE Alu 14 298 -13 3879 229 113 66 chr4 4481440 4481896 -179806766 + Charlie1a DNA MER1_type 833 1401 -1360 2448 77 0 0 chr4 4481896 4482207 -179806455 - AluY SINE Alu 0 311 1 3879 229 113 66 chr4 4482207 4482265 -179806397 + Charlie1a DNA MER1_type 1401 1455 0 237 274 105 8 chr4 4482281 4482405 -179806257 - L1M3 LINE L1 -539 5641 5506 312 350 149 35 chr4 4482477 4482899 -179805763 - L1M3 LINE L1 -1444 4702 4121 2290 91 10 0 chr4 4482899 4483208 -179805454 - AluSx SINE Alu 0 312 1 312 350 149 35 chr4 4483208 4483385 -179805277 - L1M3 LINE L1 -2025 4121 3966 226 259 17 0 chr4 4484171 4484229 -179804433 - MER63 DNA MER1_type -272 789 731 244 331 19 69 chr4 4484592 4484752 -179803910 + L2 LINE L2 2609 2760 -554 188 244 56 11 chr4 4485081 4485171 -179803491 + L2 LINE L2 2882 2975 -339 299 318 98 0 chr4 4485212 4485344 -179803318 + L2 LINE L2 3119 3263 -50 28 0 0 0 chr4 4485970 4485998 -179802664 + GC_rich Low_complexity Low_complexity 1 28 0 282 298 36 0 chr4 4486336 4486420 -179802242 - MIR SINE MIR -72 136 50 2328 72 26 0 chr4 4486447 4486751 -179801911 + AluSq SINE Alu 1 312 -1 271 279 0 13 chr4 4487793 4487872 -179800790 + L2 LINE L2 2987 3064 -208 499 267 67 0 chr4 4488162 4488312 -179800350 - MIR SINE MIR -63 199 40 180 172 0 0 chr4 4488834 4488863 -179799799 - SUBTEL_sa Satellite Satellite -133 41 13 274 289 22 37 chr4 4488983 4489118 -179799544 + L1ME4a LINE L1 5978 6110 -11 393 355 29 6 chr4 4489259 4489431 -179799231 + MIR SINE MIR 21 196 -66 261 83 0 0 chr4 4490263 4490299 -179798363 + (A)n Simple_repeat Simple_repeat 1 36 0 290 274 33 16 chr4 4490354 4490480 -179798182 + MIR SINE MIR 56 183 -62 192 315 158 0 chr4 4494617 4494744 -179793918 + MIR3 SINE MIR 1 147 -61 2317 95 0 0 chr4 4504597 4504902 -179783760 + AluSq SINE Alu 1 305 -8 1708 207 128 24 chr4 4508905 4509412 -179779250 + MER68 LTR ERV1 1 560 -2 210 186 70 0 chr4 4510749 4510792 -179777870 + L2 LINE L2 3227 3272 0 1479 219 34 8 chr4 4511063 4511415 -179777247 + MLT1A1 LTR MaLR 5 365 0 405 158 67 6 chr4 4512211 4512375 -179776287 + (TG)n Simple_repeat Simple_repeat 1 174 0 264 196 54 18 chr4 4512390 4512558 -179776104 + (TG)n Simple_repeat Simple_repeat 1 174 0 461 139 66 12 chr4 4512640 4512806 -179775856 + (TG)n Simple_repeat Simple_repeat 1 175 0 184 143 71 0 chr4 4512852 4512922 -179775740 + (TG)n Simple_repeat Simple_repeat 1 75 0 186 143 0 0 chr4 4513274 4513309 -179775353 + (TCC)n Simple_repeat Simple_repeat 1 35 0 854 204 0 19 chr4 4515455 4515612 -179773050 - AluJb SINE Alu -21 291 138 23 0 0 0 chr4 4516056 4516079 -179772583 + AT_rich Low_complexity Low_complexity 1 23 0 283 333 49 14 chr4 4519673 4519817 -179768845 - MIR SINE MIR -75 187 39 477 244 0 9 chr4 4519945 4520060 -179768602 + L1MB8 LINE L1 6064 6177 -1 309 306 113 19 chr4 4520995 4521155 -179767507 - MIR SINE MIR -67 195 21 183 156 0 0 chr4 4522971 4523003 -179765659 + (CA)n Simple_repeat Simple_repeat 1 32 0 2478 85 0 0 chr4 4523292 4523585 -179765077 - AluSx SINE Alu -18 294 2 2828 7 0 0 chr4 4524897 4525193 -179763469 - AluYa5 SINE Alu -15 296 1 244 288 88 40 chr4 4525402 4525527 -179763135 - MIR SINE MIR 0 262 132 216 321 104 19 chr4 4526321 4526427 -179762235 - L2 LINE L2 0 3313 3199 215 346 0 0 chr4 4527674 4527752 -179760910 + L2 LINE L2 3227 3304 -9 675 297 50 5 chr4 4528331 4528550 -179760112 + MIR SINE MIR 18 246 -16 27 29 0 0 chr4 4529759 4529793 -179758869 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr4 4530237 4530265 -179758397 + AT_rich Low_complexity Low_complexity 1 28 0 2446 81 0 7 chr4 4530733 4531041 -179757621 + AluSx SINE Alu 1 306 -6 28 48 0 0 chr4 4535991 4536033 -179752629 + AT_rich Low_complexity Low_complexity 1 42 0 1229 153 35 9 chr4 4536148 4536377 -179752285 - MER46A DNA MER2_type 0 236 2 508 241 90 66 chr4 4536623 4536835 -179751827 + L1ME4a LINE L1 5900 6116 -5 1577 178 3 53 chr4 4536946 4537249 -179751413 - AluJo SINE Alu -22 290 3 27 0 0 26 chr4 4537249 4537260 -179751402 + AT_rich Low_complexity Low_complexity 1 11 -26 643 202 8 8 chr4 4537260 4537389 -179751273 - FLAM_C SINE Alu -2 131 3 27 0 0 26 chr4 4537389 4537415 -179751247 + AT_rich Low_complexity Low_complexity 11 37 0 636 279 125 43 chr4 4538751 4538913 -179749749 + L1ME1 LINE L1 5743 5890 -276 1582 177 37 31 chr4 4538913 4539207 -179749455 - AluJo SINE Alu -16 296 1 636 279 125 43 chr4 4539207 4539435 -179749227 + L1ME1 LINE L1 5890 6165 -1 338 252 230 0 chr4 4539995 4540130 -179748532 + MER5C DNA MER1_type 85 250 -74 2312 117 0 3 chr4 4540383 4540690 -179747972 - AluSx SINE Alu -6 306 1 2324 88 10 0 chr4 4542380 4542676 -179745986 - AluSq SINE Alu -14 299 1 2270 126 3 0 chr4 4543412 4543721 -179744941 + AluSx SINE Alu 1 310 -2 621 311 40 18 chr4 4544143 4544368 -179744294 + MIR SINE MIR 14 243 -19 1982 164 0 7 chr4 4545183 4545482 -179743180 - AluJb SINE Alu -15 297 1 565 271 105 22 chr4 4546076 4546305 -179742357 + MLT1J2 LTR MaLR 203 450 0 787 241 45 0 chr4 4548118 4548317 -179740345 - MER3 DNA MER1_type 0 209 2 1482 203 0 45 chr4 4549559 4549870 -179738792 + AluJo SINE Alu 1 297 -15 344 289 100 22 chr4 4549884 4550064 -179738598 + MLT1K LTR MaLR 395 588 0 256 272 29 69 chr4 4550236 4550409 -179738253 - HAL1b LINE L1 -437 911 746 2501 77 10 3 chr4 4550465 4550776 -179737886 + AluSp SINE Alu 1 313 0 309 250 0 0 chr4 4551147 4551211 -179737451 - HAL1 LINE L1 -628 1879 1816 1056 135 214 44 chr4 4551230 4551482 -179737180 - AluJo SINE Alu -7 295 1 1774 153 26 35 chr4 4551562 4551875 -179736787 - AluJo SINE Alu -2 310 1 1682 191 30 0 chr4 4551896 4552194 -179736468 - AluJb SINE Alu -5 307 1 2884 133 64 2 chr4 4552195 4552693 -179735969 - L1MB3 LINE L1 -43 6140 5612 192 186 17 85 chr4 4553134 4553193 -179735469 + MIR SINE MIR 89 143 -119 417 289 64 0 chr4 4553643 4553799 -179734863 - MER97a DNA MER1_type? -715 179 14 463 191 16 165 chr4 4554409 4554501 -179734161 + MER5A DNA MER1_type 1 105 -84 2208 90 0 0 chr4 4554501 4554778 -179733884 + AluY SINE Alu 20 296 -15 2403 78 0 38 chr4 4554778 4555098 -179733564 + AluY SINE Alu 1 308 -3 463 191 16 165 chr4 4555098 4555198 -179733464 + MER5A DNA MER1_type 103 165 -24 324 349 92 13 chr4 4555559 4555711 -179732951 - L1ME4a LINE L1 -6 6115 5952 330 115 0 51 chr4 4555948 4556026 -179732636 + (TTCC)n Simple_repeat Simple_repeat 4 77 0 1619 153 102 4 chr4 4556031 4556306 -179732356 - AluJb SINE Alu -10 302 1 233 194 32 32 chr4 4556355 4556417 -179732245 - L1ME4a LINE L1 -379 5785 5724 344 317 219 3 chr4 4556560 4556948 -179731714 + L2 LINE L2 1466 1937 -1377 515 289 52 65 chr4 4557590 4558037 -179730625 + L2 LINE L2 2834 3274 -39 1634 169 18 14 chr4 4558755 4559034 -179729628 + AluJb SINE Alu 1 280 -32 249 33 0 0 chr4 4559034 4559064 -179729598 + (GGAAA)n Simple_repeat Simple_repeat 1 30 0 2185 107 3 20 chr4 4560755 4561055 -179727607 + AluSx SINE Alu 1 295 -17 223 221 0 29 chr4 4561073 4561141 -179727521 + C-rich Low_complexity Low_complexity 1 66 0 299 327 0 0 chr4 4562049 4562199 -179726463 + (CA)n Simple_repeat Simple_repeat 2 151 0 245 297 11 0 chr4 4562214 4562305 -179726357 + (CA)n Simple_repeat Simple_repeat 2 93 0 210 71 0 0 chr4 4562320 4562348 -179726314 + (CA)n Simple_repeat Simple_repeat 2 29 0 297 56 0 0 chr4 4563152 4563188 -179725474 + U2 snRNA snRNA 1 36 -152 2539 62 0 0 chr4 4565610 4565915 -179722747 + AluY SINE Alu 1 305 -6 183 80 0 0 chr4 4566995 4567020 -179721642 + (GAAA)n Simple_repeat Simple_repeat 3 27 0 2562 53 0 10 chr4 4567966 4568268 -179720394 + AluY SINE Alu 1 299 -12 228 348 8 59 chr4 4569847 4569965 -179718697 - L2 LINE L2 0 3313 3202 2199 113 3 19 chr4 4570160 4570478 -179718184 + AluSq SINE Alu 1 313 0 3464 226 63 79 chr4 4571024 4572063 -179716599 + L1MEc LINE L1 24 1077 -5319 2202 125 7 0 chr4 4572063 4572360 -179716302 + AluSx SINE Alu 1 299 -13 3464 226 63 79 chr4 4572360 4572619 -179716043 + L1MEc LINE L1 1077 1300 -5096 2476 87 0 0 chr4 4572619 4572930 -179715732 + AluY SINE Alu 1 311 0 3464 226 63 79 chr4 4572930 4573062 -179715600 + L1MEc LINE L1 1300 1433 -4963 911 151 19 25 chr4 4573075 4573234 -179715428 - AluJb SINE Alu -45 267 110 2049 129 0 3 chr4 4574566 4574853 -179713809 + AluSg SINE Alu 1 286 -24 37369 95 10 12 chr4 4574865 4581016 -179707646 + L1PA7 LINE L1 11 6154 0 229 347 32 0 chr4 4583427 4583522 -179705140 + L1M4 LINE L1 4482 4579 -1567 1830 145 35 0 chr4 4583654 4583944 -179704718 + AluJo SINE Alu 1 300 -12 783 158 30 8 chr4 4584260 4584393 -179704269 + MER68 LTR ERV1 117 252 -310 317 254 70 56 chr4 4584405 4584547 -179704115 + MER68 LTR ERV1 353 496 -66 2201 105 14 0 chr4 4585517 4585803 -179702859 + AluSx SINE Alu 1 290 -22 1398 117 77 55 chr4 4585812 4586016 -179702646 + L1MA8 LINE L1 6011 6224 -67 1889 137 0 56 chr4 4586016 4586337 -179702325 - AluSg SINE Alu -7 303 1 1398 117 77 55 chr4 4586337 4586406 -179702256 + L1MA8 LINE L1 6224 6290 -1 2155 105 0 14 chr4 4586412 4586735 -179701927 + AluY SINE Alu 1 319 0 184 0 0 88 chr4 4587653 4587687 -179700975 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 1768 151 34 7 chr4 4588005 4588296 -179700366 - AluJo SINE Alu -13 299 1 300 228 78 5 chr4 4588319 4588408 -179700254 - MIR SINE MIR -68 140 48 1084 168 13 5 chr4 4588588 4588894 -179699768 + MLT1A1 LTR MaLR 1 374 0 1610 93 4 31 chr4 4588986 4589211 -179699451 + AluSc SINE Alu 1 219 -90 972 219 129 4 chr4 4589256 4589535 -179699127 + L1MB8 LINE L1 5859 6172 -6 2378 86 0 3 chr4 4589539 4589843 -179698819 + AluSg SINE Alu 1 303 -7 1016 168 7 0 chr4 4589843 4589998 -179698664 + AluJb SINE Alu 134 289 -23 23 0 0 0 chr4 4589998 4590021 -179698641 + AT_rich Low_complexity Low_complexity 1 23 0 210 288 34 0 chr4 4590035 4590094 -179698568 - L2 LINE L2 -685 2629 2569 217 200 60 0 chr4 4590105 4590155 -179698507 + (TATATG)n Simple_repeat Simple_repeat 6 58 0 1884 112 26 59 chr4 4590156 4590347 -179698315 - MER1B DNA MER1_type -2373 339 143 1700 116 100 107 chr4 4590347 4590778 -179697884 + MSTA LTR MaLR 1 428 0 1884 112 26 59 chr4 4590778 4590867 -179697795 - MER1B DNA MER1_type -2569 143 66 2207 88 0 11 chr4 4590867 4591182 -179697480 - AluY SINE Alu 0 312 1 1884 112 26 59 chr4 4591182 4591202 -179697460 - MER1B DNA MER1_type -2646 66 47 198 191 0 0 chr4 4591216 4591258 -179697404 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 913 236 5 5 chr4 4591567 4591762 -179696900 - MER3 DNA MER1_type 0 209 15 2195 118 0 32 chr4 4592329 4592642 -179696020 + AluSq SINE Alu 1 303 -10 279 266 0 0 chr4 4592747 4592811 -179695851 + MER3 DNA MER1_type 15 78 -131 1879 141 3 46 chr4 4592966 4593129 -179695533 - AluSx SINE Alu -15 297 151 2539 48 0 3 chr4 4593129 4593421 -179695241 - AluY SINE Alu -20 291 1 1879 141 3 46 chr4 4593421 4593563 -179695099 - AluSx SINE Alu -161 151 5 901 299 46 46 chr4 4595360 4595881 -179692781 + ERVL LTR ERVL 4893 5413 -351 2217 128 0 0 chr4 4597321 4597619 -179691043 + AluSg SINE Alu 1 298 -12 403 160 75 11 chr4 4597664 4597758 -179690904 - L1ME4a LINE L1 -1 6120 6021 310 250 177 39 chr4 4597764 4597996 -179690666 - L1ME4a LINE L1 -126 5995 5732 2499 83 3 6 chr4 4598034 4598348 -179690314 + AluSp SINE Alu 1 313 0 2415 99 0 0 chr4 4598470 4598782 -179689880 - AluSx SINE Alu 0 312 1 27 29 0 0 chr4 4599605 4599639 -179689023 + AT_rich Low_complexity Low_complexity 1 34 0 1899 144 6 6 chr4 4600144 4600456 -179688206 - AluSx SINE Alu 0 312 1 2123 118 3 25 chr4 4601648 4601963 -179686699 - AluSg SINE Alu -2 308 1 2060 145 3 0 chr4 4602439 4602743 -179685919 + AluSx SINE Alu 1 305 -7 1984 146 7 10 chr4 4603023 4603331 -179685331 + AluSx SINE Alu 1 307 -5 1479 108 33 21 chr4 4603455 4603696 -179684966 + L1PB3 LINE L1 5911 6154 0 677 190 12 0 chr4 4603707 4603870 -179684792 + GA-rich Low_complexity Low_complexity 4 168 0 1368 194 73 60 chr4 4603922 4604227 -179684435 + L1MB7 LINE L1 5628 5978 -200 2268 79 7 0 chr4 4604227 4604505 -179684157 - AluSx SINE Alu -18 294 15 1368 194 73 60 chr4 4604505 4604709 -179683953 + L1MB7 LINE L1 5978 6178 0 2133 104 49 0 chr4 4604730 4605018 -179683644 + AluSg SINE Alu 1 302 -8 458 236 222 22 chr4 4605170 4605395 -179683267 + L1ME4a LINE L1 5836 6105 -16 527 128 0 13 chr4 4606600 4606678 -179681984 - AluSc SINE Alu -17 292 216 1852 163 27 0 chr4 4606914 4607214 -179681448 + AluJo SINE Alu 1 308 -4 23 0 0 0 chr4 4608392 4608415 -179680247 + AT_rich Low_complexity Low_complexity 1 23 0 1554 159 24 57 chr4 4608437 4608733 -179679929 - AluJb SINE Alu -25 287 2 2361 196 73 14 chr4 4612579 4613177 -179675485 + L1MB3 LINE L1 5548 6176 -7 22 0 0 0 chr4 4613418 4613440 -179675222 + AT_rich Low_complexity Low_complexity 1 22 0 246 206 32 16 chr4 4613692 4613703 -179674959 + AluYb8 SINE Alu 245 254 -54 1792 140 0 0 chr4 4613703 4613953 -179674709 + AluSx SINE Alu 1 250 -62 * 2341 109 0 0 chr4 4613952 4614254 -179674408 - AluSx SINE Alu -10 302 1 246 206 32 16 chr4 4614254 4614305 -179674357 + AluYb8 SINE Alu 555 308 0 24 53 0 0 chr4 4615356 4615394 -179673268 + AT_rich Low_complexity Low_complexity 1 38 0 1921 125 0 58 chr4 4615582 4615895 -179672767 + AluSx SINE Alu 1 295 -17 29 60 0 0 chr4 4616645 4616695 -179671967 + AT_rich Low_complexity Low_complexity 1 50 0 1092 168 59 25 chr4 4618233 4618399 -179670263 - AluJo SINE Alu -19 293 117 180 0 0 0 chr4 4618399 4618419 -179670243 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1092 168 59 25 chr4 4618419 4618454 -179670208 - AluJo SINE Alu -195 117 85 770 223 150 0 chr4 4618545 4618738 -179669924 + MER58A DNA MER1_type 1 222 -2 1434 158 74 37 chr4 4620045 4620342 -179668320 - AluJb SINE Alu -4 308 1 2258 133 18 3 chr4 4621148 4621480 -179667182 - MER1B DNA MER1_type 0 337 1 257 150 0 0 chr4 4621480 4621520 -179667142 - MER1B DNA MER1_type -297 40 1 848 180 51 0 chr4 4621573 4621751 -179666911 - MER53 DNA DNA -2 187 1 917 240 45 0 chr4 4621872 4622072 -179666590 + MER58A DNA MER1_type 5 213 -11 237 286 65 32 chr4 4622121 4622275 -179666387 - HAL1b LINE L1 -437 911 753 314 311 57 0 chr4 4622868 4622974 -179665688 - HAL1 LINE L1 -814 1693 1582 828 224 114 93 chr4 4623699 4624091 -179664571 + L1MC5 LINE L1 7270 7679 -282 1696 190 17 0 chr4 4624091 4624380 -179664282 - AluJb SINE Alu -18 294 1 828 224 114 93 chr4 4624380 4624546 -179664116 + L1MC5 LINE L1 7679 7840 -121 184 216 0 0 chr4 4624841 4624878 -179663784 - MIR SINE MIR -25 237 201 306 206 41 0 chr4 4624894 4624967 -179663695 - Charlie7 DNA MER1_type -2158 454 379 394 294 9 0 chr4 4625282 4625391 -179663271 + L2 LINE L2 3162 3271 -1 3763 109 0 4 chr4 4627530 4628043 -179660619 + MER9 LTR ERVK 1 511 0 2236 128 0 0 chr4 4628306 4628604 -179660058 + AluSx SINE Alu 1 298 -14 2001 257 70 20 chr4 4628950 4629654 -179659008 + L1ME3A LINE L1 5416 6154 -16 517 276 98 91 chr4 4629733 4630439 -179658223 + HAL1 LINE L1 1 711 -1796 2214 114 0 0 chr4 4630455 4630752 -179657910 + AluSx SINE Alu 14 310 -2 969 191 12 0 chr4 4630752 4630920 -179657742 + AluJo/FRAM SINE Alu 135 304 -8 583 228 56 28 chr4 4630978 4631158 -179657504 + HAL1 LINE L1 1178 1362 -1145 934 274 151 47 chr4 4631177 4631773 -179656889 + HAL1 LINE L1 1442 2099 -408 386 198 83 87 chr4 4632333 4632412 -179656250 + HAL1 LINE L1 2263 2341 -166 2265 91 7 0 chr4 4632412 4632721 -179655941 + AluSp SINE Alu 2 312 0 386 198 83 87 chr4 4632721 4632868 -179655794 + HAL1 LINE L1 2341 2491 -16 1607 188 0 33 chr4 4632868 4633172 -179655490 - AluJo SINE Alu -18 294 1 386 198 83 87 chr4 4633172 4633185 -179655477 + HAL1 LINE L1 2491 2503 -4 260 327 103 33 chr4 4633713 4633927 -179654735 - MIR SINE MIR 0 262 34 214 329 24 0 chr4 4635360 4635445 -179653217 - L2 LINE L2 -557 2757 2671 1666 158 59 0 chr4 4635574 4635847 -179652815 - AluJb SINE Alu -23 289 1 417 258 129 80 chr4 4636160 4636447 -179652215 - L2 LINE L2 -8 3305 3005 257 191 0 0 chr4 4636938 4636985 -179651677 + L1MA2 LINE L1 6070 6116 -188 1644 190 37 0 chr4 4637003 4637303 -179651359 - AluJb SINE Alu -1 311 1 2286 101 7 0 chr4 4637306 4637604 -179651058 - AluSx SINE Alu -8 304 5 717 45 0 0 chr4 4637638 4637727 -179650935 + AluS SINE Alu 2 90 -223 626 137 21 0 chr4 4637733 4637828 -179650834 + AluSg/x SINE Alu 193 289 -20 1074 117 12 0 chr4 4637829 4637991 -179650671 + L1MA2 LINE L1 6134 6297 -7 28 29 0 0 chr4 4638001 4638036 -179650626 + AT_rich Low_complexity Low_complexity 1 35 0 2566 62 0 3 chr4 4638410 4638714 -179649948 + AluSp SINE Alu 1 303 -10 21 0 0 0 chr4 4638727 4638748 -179649914 + AT_rich Low_complexity Low_complexity 1 21 0 1942 131 3 3 chr4 4640907 4641190 -179647472 + AluJb SINE Alu 1 283 -29 200 261 15 0 chr4 4641681 4641746 -179646916 + (CA)n Simple_repeat Simple_repeat 1 66 0 1450 158 54 28 chr4 4642664 4642981 -179645681 + L1MC3 LINE L1 7461 7785 0 1030 159 246 10 chr4 4643802 4644111 -179644551 - Charlie5 DNA MER1_type 0 2624 2243 3914 247 58 31 chr4 4644116 4644282 -179644380 - L1MEc LINE L1 -2647 3568 3408 2324 113 0 0 chr4 4644282 4644583 -179644079 - AluSx SINE Alu -8 304 4 3914 247 58 31 chr4 4644583 4644806 -179643856 - L1MEc LINE L1 -2807 3408 3192 1717 198 0 0 chr4 4644806 4645099 -179643563 - AluJo SINE Alu -19 293 1 3914 247 58 31 chr4 4645099 4646062 -179642600 - L1MEc LINE L1 -3023 3192 2179 429 242 129 16 chr4 4646071 4646257 -179642405 - L1MEc LINE L1 -4205 2191 1985 574 156 15 82 chr4 4646257 4646392 -179642270 - MLT1D LTR MaLR -3 502 377 9082 59 7 172 chr4 4646395 4648023 -179640639 + SVA Other Other 28 1386 0 1195 204 59 64 chr4 4648067 4648455 -179640207 - MLT1D LTR MaLR -119 386 1 315 248 74 33 chr4 4648455 4648576 -179640086 - L1MEc LINE L1 -4424 1972 1847 * 2154 251 68 22 chr4 4648570 4649216 -179639446 - L1MEc LINE L1 -5720 676 1 1696 174 17 7 chr4 4649254 4649542 -179639120 + AluJo SINE Alu 1 291 -21 2055 108 7 7 chr4 4649616 4649902 -179638760 + AluSg SINE Alu 1 286 -24 301 274 69 10 chr4 4650013 4650115 -179638547 - L1ME LINE L1 -462 5659 5552 584 205 8 33 chr4 4650210 4650332 -179638330 - MLT1A2 LTR MaLR 0 374 256 2158 148 0 0 chr4 4650795 4651106 -179637556 - AluSq SINE Alu -2 311 1 325 283 56 66 chr4 4651124 4651322 -179637340 - L1ME LINE L1 -1477 4669 4474 213 298 0 18 chr4 4651606 4651663 -179636999 + MER5A DNA MER1_type 131 186 -3 2500 68 0 0 chr4 4652383 4652676 -179635986 + AluY SINE Alu 1 293 -18 283 288 141 18 chr4 4652753 4652916 -179635746 - MIR SINE MIR -29 233 51 984 204 102 32 chr4 4653170 4653454 -179635208 + L1MB3 LINE L1 5879 6182 -1 2271 83 41 0 chr4 4653462 4653752 -179634910 + AluY SINE Alu 1 302 -9 2176 87 49 7 chr4 4653801 4654089 -179634573 + AluSp SINE Alu 3 302 -11 1610 202 10 10 chr4 4655240 4655547 -179633115 - AluJo SINE Alu -5 307 1 307 290 65 0 chr4 4655554 4655661 -179633001 - MIR SINE MIR -117 145 32 427 294 28 28 chr4 4655667 4655844 -179632818 + MER104 DNA Tc2 1 177 -3 2068 104 24 0 chr4 4656503 4656791 -179631871 + AluSx SINE Alu 1 295 -17 940 129 14 0 chr4 4656661 4656800 -179631862 + AluSg/x SINE Alu 162 302 -8 2444 93 0 3 chr4 4656893 4657204 -179631458 - AluY SINE Alu -1 310 1 2239 122 0 3 chr4 4657233 4657529 -179631133 - AluSx SINE Alu -17 295 1 851 146 0 0 chr4 4657606 4657743 -179630919 + AluSg/x SINE Alu 174 310 0 2483 149 99 62 chr4 4657744 4658308 -179630354 - L1MD2 LINE L1 -291 6068 5484 513 0 0 0 chr4 4658348 4658405 -179630257 + (TG)n Simple_repeat Simple_repeat 2 58 0 1555 170 24 35 chr4 4658408 4658697 -179629965 - AluJo SINE Alu -26 286 1 411 267 182 15 chr4 4658748 4659025 -179629637 + L2 LINE L2 2784 3104 -209 252 311 236 20 chr4 4659270 4659418 -179629244 - MER5A DNA MER1_type 0 189 10 390 296 127 55 chr4 4659771 4660024 -179628638 + L1ME4a LINE L1 5840 6110 -11 2482 74 6 3 chr4 4660078 4660389 -179628273 + AluSp SINE Alu 1 312 -1 1238 183 70 4 chr4 4660444 4660717 -179627945 + MER58B DNA MER1_type 43 333 -8 3635 184 37 1 chr4 4660717 4661510 -179627152 + L1M4 LINE L1 4517 5337 -809 2293 126 0 0 chr4 4661541 4661842 -179626820 + AluSq SINE Alu 1 301 -12 955 266 58 35 chr4 4662012 4662410 -179626252 + L2 LINE L2 2503 2909 -405 918 207 5 25 chr4 4662490 4662688 -179625974 + AluJo SINE Alu 112 305 -7 189 191 24 0 chr4 4662693 4662735 -179625927 + L2 LINE L2 3032 3074 -239 1759 154 0 45 chr4 4662740 4662885 -179625777 + AluSx SINE Alu 1 128 -184 2397 67 0 54 chr4 4662885 4663200 -179625462 + AluY SINE Alu 1 298 -13 1759 154 0 45 chr4 4663200 4663340 -179625322 + AluSx SINE Alu 128 273 -39 224 59 29 0 chr4 4663347 4663381 -179625281 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 394 98 16 0 chr4 4663393 4663454 -179625208 + U7 snRNA snRNA 2 63 0 23 0 0 0 chr4 4663457 4663480 -179625182 + AT_rich Low_complexity Low_complexity 1 23 0 693 233 93 23 chr4 4663496 4663711 -179624951 + L2 LINE L2 3084 3313 0 21 57 0 0 chr4 4664130 4664165 -179624497 + AT_rich Low_complexity Low_complexity 1 35 0 2221 119 0 0 chr4 4664218 4664504 -179624158 + AluSg SINE Alu 1 286 -24 2240 109 0 0 chr4 4664750 4665035 -179623627 - AluSx SINE Alu -22 290 6 228 224 13 66 chr4 4665180 4665256 -179623406 - Tigger2 DNA MER2_type -233 2485 2414 183 100 0 0 chr4 4666882 4666912 -179621750 + (CGGGGG)n Simple_repeat Simple_repeat 4 33 0 261 198 0 0 chr4 4666914 4666995 -179621667 + (CGG)n Simple_repeat Simple_repeat 3 83 0 555 16 0 0 chr4 4666995 4667059 -179621603 + (CTG)n Simple_repeat Simple_repeat 1 64 0 28 61 0 0 chr4 4667283 4667332 -179621330 + GC_rich Low_complexity Low_complexity 1 49 0 402 270 0 53 chr4 4667481 4667670 -179620992 + (CGGGG)n Simple_repeat Simple_repeat 1 179 0 197 62 0 31 chr4 4667681 4667713 -179620949 + (CGGGG)n Simple_repeat Simple_repeat 4 34 0 381 239 6 40 chr4 4667748 4667924 -179620738 + (CGGGG)n Simple_repeat Simple_repeat 5 174 0 733 144 24 8 chr4 4668873 4668998 -179619664 + FRAM SINE Alu 28 154 -22 2296 98 10 3 chr4 4669012 4669308 -179619354 + AluSx SINE Alu 6 303 -9 1427 238 121 23 chr4 4669382 4669853 -179618809 + MLT1E LTR MaLR 8 524 -69 2023 156 48 0 chr4 4669949 4670321 -179618341 - MLT1B LTR MaLR 0 390 1 1412 216 20 73 chr4 4671094 4671492 -179617170 - MLT2D LTR ERVL -8 406 30 1125 158 6 0 chr4 4671521 4671686 -179616976 - AluJb SINE Alu -6 306 141 1986 96 75 4 chr4 4671702 4671982 -179616680 - AluSq SINE Alu -13 300 1 510 276 76 0 chr4 4672999 4673184 -179615478 - LTR33 LTR ERVL -20 501 303 581 181 26 9 chr4 4673196 4673312 -179615350 - LTR33 LTR ERVL -356 165 48 328 291 101 0 chr4 4673460 4673608 -179615054 + L1ME3A LINE L1 5789 5951 -219 2394 106 0 0 chr4 4673661 4673972 -179614690 + AluY SINE Alu 1 311 0 1302 274 44 39 chr4 4673991 4674630 -179614032 - L1ME LINE L1 -4816 1266 732 2207 128 3 0 chr4 4674630 4674926 -179613736 + AluSx SINE Alu 2 298 -14 1302 274 44 39 chr4 4674926 4675195 -179613467 - L1ME LINE L1 -5350 732 466 4592 229 99 29 chr4 4675869 4676447 -179612215 - Zaphod DNA AcHobo -5 4026 3490 2185 129 0 3 chr4 4676447 4676741 -179611921 - AluSx SINE Alu -19 293 1 4592 229 99 29 chr4 4676741 4677008 -179611654 - Zaphod DNA AcHobo -541 3490 3243 2005 101 53 63 chr4 4677008 4677386 -179611276 - THE1C LTR MaLR -1 374 1 4592 229 99 29 chr4 4677386 4678051 -179610611 - Zaphod DNA AcHobo -788 3243 2409 2458 93 3 0 chr4 4678073 4678384 -179610278 + AluSx SINE Alu 1 312 0 889 264 134 26 chr4 4678385 4678772 -179609890 - Zaphod DNA AcHobo -3254 777 349 286 286 62 19 chr4 4678804 4678965 -179609697 + L1ME LINE L1 21 188 -6235 4887 241 105 79 chr4 4679494 4680863 -179607799 + L1ME LINE L1 1263 2594 -4347 2364 113 0 6 chr4 4680863 4681174 -179607488 + AluSq SINE Alu 1 309 -4 4887 241 105 79 chr4 4681174 4681627 -179607035 + L1ME LINE L1 2594 3034 -3907 2527 77 0 3 chr4 4681627 4681937 -179606725 + AluY SINE Alu 1 309 -2 4887 241 105 79 chr4 4681937 4682793 -179605869 + L1ME LINE L1 3034 3866 -3075 2179 73 4 11 chr4 4682793 4683094 -179605568 + AluSg SINE Alu 13 311 0 4887 241 105 79 chr4 4683094 4683797 -179604865 + L1ME LINE L1 3866 4549 -2392 2048 141 0 3 chr4 4683797 4684081 -179604581 + AluSx SINE Alu 1 283 -29 522 46 0 0 chr4 4684082 4684147 -179604515 + (GGAA)n Simple_repeat Simple_repeat 1 65 0 4887 241 105 79 chr4 4684147 4684861 -179603801 + L1ME LINE L1 4549 5243 -1698 2182 118 3 22 chr4 4684861 4685176 -179603486 + AluSq SINE Alu 1 309 -4 4887 241 105 79 chr4 4685176 4685505 -179603157 + L1ME LINE L1 5243 5984 -957 246 248 17 94 chr4 4685505 4685622 -179603040 + L1MEc LINE L1 39 146 -6250 342 296 82 25 chr4 4688166 4688409 -179600253 - MLT2E LTR ERVL -338 290 34 2288 87 0 14 chr4 4688716 4689003 -179599659 - AluSx SINE Alu -17 295 13 2153 108 26 3 chr4 4689157 4689463 -179599199 - AluSp SINE Alu 0 313 1 2677 26 0 7 chr4 4689474 4689776 -179598886 - AluY SINE Alu -11 300 1 482 167 67 0 chr4 4690137 4690257 -179598405 - L1PA12 LINE L1 -115 6053 5926 1828 170 7 0 chr4 4690355 4690666 -179597996 - AluJo SINE Alu 0 312 1 242 230 68 14 chr4 4690781 4690855 -179597807 + L1ME LINE L1 6363 6440 -476 2660 173 39 24 chr4 4690876 4691059 -179597603 + L1MB3 LINE L1 5585 5764 -419 1922 165 3 3 chr4 4691059 4691362 -179597300 + AluJb SINE Alu 1 303 -9 2660 173 39 24 chr4 4691362 4691724 -179596938 + L1MB3 LINE L1 5764 6142 -41 2450 86 0 0 chr4 4691724 4692037 -179596625 + AluSq SINE Alu 1 313 0 2660 173 39 24 chr4 4692037 4692080 -179596582 + L1MB3 LINE L1 6142 6183 0 690 299 66 10 chr4 4692080 4692384 -179596278 + L1MC4a LINE L1 4650 4970 -1176 262 169 51 0 chr4 4692405 4692464 -179596198 - HAL1 LINE L1 -420 2087 2026 321 339 81 36 chr4 4692481 4692702 -179595960 + L1MC4a LINE L1 5668 5898 -1910 246 299 56 28 chr4 4694170 4694314 -179594348 + L2 LINE L2 3111 3258 -55 2054 249 107 15 chr4 4694706 4695388 -179593274 + Charlie1 DNA MER1_type 1538 2282 -479 2172 55 0 85 chr4 4695392 4695685 -179592977 + AluY SINE Alu 14 281 -30 227 205 60 48 chr4 4696599 4696682 -179591980 + HAL1 LINE L1 1304 1387 -1120 234 318 139 20 chr4 4699310 4699461 -179589201 + MLT1-int LTR MaLR 719 887 -484 974 246 104 30 chr4 4700024 4700471 -179588191 + MLT1F1 LTR MaLR 2 540 -114 222 208 19 17 chr4 4700760 4700820 -179587842 - MIR3 SINE MIR -52 156 114 180 111 0 0 chr4 4702316 4702343 -179586319 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 444 219 38 19 chr4 4703358 4703463 -179585199 + MER53 DNA DNA 1 107 -82 241 257 0 71 chr4 4703684 4703824 -179584838 + (CCCCAG)n Simple_repeat Simple_repeat 4 133 0 322 267 13 0 chr4 4704500 4704575 -179584087 + L2 LINE L2 3232 3307 -6 207 43 29 100 chr4 4705037 4705107 -179583555 + (TCCC)n Simple_repeat Simple_repeat 2 66 0 292 262 220 6 chr4 4705114 4705282 -179583380 - MER58A DNA MER1_type -20 204 1 301 208 0 31 chr4 4707284 4707414 -179581248 + (CA)n Simple_repeat Simple_repeat 2 127 0 287 289 0 0 chr4 4707437 4707520 -179581142 + (CA)n Simple_repeat Simple_repeat 1 83 0 453 250 2 4 chr4 4707549 4707933 -179580729 + (CA)n Simple_repeat Simple_repeat 1 383 0 329 224 6 0 chr4 4707960 4708116 -179580546 + (CA)n Simple_repeat Simple_repeat 1 157 0 657 301 79 18 chr4 4709227 4709506 -179579156 - L1ME3A LINE L1 -206 5964 5669 239 252 0 0 chr4 4709562 4709623 -179579039 - L1ME3A LINE L1 -790 5356 5296 1994 214 11 15 chr4 4709857 4710395 -179578267 + L1MB3 LINE L1 2916 3451 -2695 825 114 8 0 chr4 4710400 4710523 -179578139 + AluJb SINE Alu 2 125 -187 2137 131 0 0 chr4 4710536 4710848 -179577814 + AluSx SINE Alu 1 312 0 872 165 35 18 chr4 4710849 4711019 -179577643 + L1MB3 LINE L1 3446 3618 -2528 829 142 18 17 chr4 4711022 4711599 -179577063 + GA-rich Low_complexity Low_complexity 1 577 0 7497 168 45 16 chr4 4711604 4714097 -179574565 + L1MB3 LINE L1 3611 6183 0 1910 145 0 3 chr4 4714104 4714408 -179574254 + AluJb SINE Alu 1 303 -9 308 211 84 21 chr4 4714428 4714523 -179574139 - L1ME3A LINE L1 -1479 4667 4567 1284 228 120 83 chr4 4714533 4714634 -179574028 - L1ME3A LINE L1 -1816 4330 4234 1919 164 0 0 chr4 4714634 4714939 -179573723 - AluJb SINE Alu 0 312 8 1284 228 120 83 chr4 4714939 4715544 -179573118 - L1ME3A LINE L1 -1912 4234 3598 789 283 108 34 chr4 4715529 4716003 -179572659 - L1ME3A LINE L1 -2954 3192 2684 * 1718 341 56 17 chr4 4716481 4717567 -179571095 + HERV16 LTR ERVL 1851 2987 -2009 2584 130 34 20 chr4 4717567 4718006 -179570656 + MER65A LTR ERV1 1 445 0 6464 167 58 32 chr4 4718007 4719747 -179568915 + MER65A-int LTR ERV1 6 1905 -2966 1917 164 0 0 chr4 4719747 4720059 -179568603 - AluJo SINE Alu 0 312 1 6464 167 58 32 chr4 4720059 4720694 -179567968 + MER65A-int LTR ERV1 1905 2522 -2349 1422 180 82 96 chr4 4720700 4721425 -179567237 + MER65A-int LTR ERV1 1546 3475 -3123 718 147 156 102 chr4 4721623 4721848 -179566814 + MER65A-int LTR ERV1 3494 3730 -2868 1344 134 48 45 chr4 4721928 4722219 -179566443 + MER65A-int LTR ERV1 3730 4021 -2577 * 2813 175 110 46 chr4 4722202 4722995 -179565667 + MER65A-int LTR ERV1 2805 3546 -2785 2285 86 0 0 chr4 4722995 4723296 -179565366 - AluY SINE Alu -10 301 1 2813 175 110 46 chr4 4723296 4723680 -179564982 + MER65A-int LTR ERV1 3546 5094 -1237 255 158 0 0 chr4 4723663 4723701 -179564961 + MER65A-int LTR ERV1 5337 5374 -957 * 3918 156 94 3 chr4 4723732 4724413 -179564249 + MER65A-int LTR ERV1 3605 4347 -524 663 139 130 0 chr4 4724418 4724533 -179564129 + BC200 scRNA scRNA 5 134 -66 3515 96 20 6 chr4 4724555 4725064 -179563598 + MER65A-int LTR ERV1 4356 4871 0 2488 124 54 28 chr4 4725064 4725492 -179563170 + MER65A LTR ERV1 1 439 -6 1222 254 79 10 chr4 4726622 4727016 -179561646 + L1MC2 LINE L1 5918 6338 -6 317 305 57 14 chr4 4727058 4727199 -179561463 + MIR SINE MIR 102 248 -14 193 228 81 106 chr4 4727753 4727876 -179560786 + MIR SINE MIR 111 230 -32 510 312 3 10 chr4 4728631 4729061 -179559601 + C-rich Low_complexity Low_complexity 1 427 0 456 321 0 39 chr4 4729113 4729370 -179559292 + C-rich Low_complexity Low_complexity 1 246 0 2081 185 40 7 chr4 4730592 4731019 -179557643 + MER65A LTR ERV1 5 445 0 1817 150 7 0 chr4 4731036 4731330 -179557332 - AluJo SINE Alu -15 297 2 2118 104 3 0 chr4 4732173 4732462 -179556200 + AluSp SINE Alu 2 291 -22 258 208 139 10 chr4 4732524 4732625 -179556037 - MIR3 SINE MIR -54 154 41 3637 198 58 24 chr4 4732684 4733523 -179555139 - L1MB3 LINE L1 -15 6168 5299 805 226 28 9 chr4 4733623 4733840 -179554822 - L1MB3 LINE L1 -811 5335 5115 370 328 42 0 chr4 4733886 4734005 -179554657 + L2 LINE L2 3148 3271 -1 335 243 83 48 chr4 4734127 4734378 -179554284 - LTR33A LTR ERVL 0 773 262 2056 102 0 7 chr4 4734406 4734724 -179553938 - AluSx SINE Alu 0 316 1 471 172 0 50 chr4 4734727 4734826 -179553836 - AluJo/FRAM SINE Alu -17 295 202 250 191 0 0 chr4 4734826 4734868 -179553794 - Alu SINE Alu -260 42 1 25 0 0 0 chr4 4735844 4735869 -179552793 + AT_rich Low_complexity Low_complexity 1 25 0 212 196 0 39 chr4 4735924 4735975 -179552687 + GA-rich Low_complexity Low_complexity 4 52 0 622 254 96 44 chr4 4735994 4736379 -179552283 + L1ME3A LINE L1 3634 4038 -2108 522 306 150 22 chr4 4736475 4737021 -179551641 + L1ME3A LINE L1 4379 4994 -1152 616 92 0 23 chr4 4737096 4737183 -179551479 + AluSx SINE Alu 3 87 -226 2323 50 7 3 chr4 4737183 4737480 -179551182 + AluY SINE Alu 1 298 -13 1688 79 0 5 chr4 4737480 4737694 -179550968 + AluSx SINE Alu 73 287 -25 336 233 12 12 chr4 4737929 4738015 -179550647 + L1ME3A LINE L1 5401 5486 -2322 252 275 90 36 chr4 4738091 4738258 -179550404 + L1ME3A LINE L1 5781 5956 -214 30 0 0 0 chr4 4739078 4739108 -179549554 + AT_rich Low_complexity Low_complexity 1 30 0 239 250 45 11 chr4 4739217 4739305 -179549357 - L1ME4a LINE L1 -100 6021 5931 846 253 203 9 chr4 4739448 4739788 -179548874 + MLT1J LTR MaLR 2 407 -104 326 164 33 0 chr4 4739931 4739992 -179548670 - L2 LINE L2 -1 3312 3250 934 171 96 21 chr4 4741898 4742085 -179546577 - MSTC LTR MaLR -1 427 227 226 188 21 115 chr4 4742111 4742134 -179546528 - L1MA4A LINE L1 -4 6299 6277 9640 166 46 10 chr4 4742134 4743990 -179544672 - L1PB4 LINE L1 -6 6150 4175 1618 171 21 3 chr4 4743990 4744276 -179544386 + AluJo SINE Alu 1 291 -21 9640 166 46 10 chr4 4744276 4745014 -179543648 - L1PB4 LINE L1 -1981 4175 3465 1025 117 25 77 chr4 4745014 4745210 -179543452 - MSTC LTR MaLR -242 186 1 255 254 164 26 chr4 4745508 4745697 -179542965 + L1MC4a LINE L1 5254 5468 -2340 306 0 0 0 chr4 4746623 4746657 -179542005 + (TC)n Simple_repeat Simple_repeat 1 34 0 207 0 0 0 chr4 4746656 4746679 -179541983 + (CA)n Simple_repeat Simple_repeat 1 23 0 * 424 315 91 20 chr4 4746679 4747073 -179541589 + L1MC4a LINE L1 5533 5954 -1854 706 254 24 15 chr4 4747646 4747851 -179540811 - Charlie1 DNA MER1_type 0 2761 2555 185 0 0 39 chr4 4747920 4747946 -179540716 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 277 253 77 0 chr4 4748983 4749074 -179539588 + LTR50 LTR ERVL 1 98 -697 385 217 24 21 chr4 4749329 4749454 -179539208 + LTR50 LTR ERVL 654 792 -3 1739 129 3 58 chr4 4750783 4751092 -179537570 + AluJo SINE Alu 1 292 -20 810 154 18 24 chr4 4751215 4751384 -179537278 - AluJo SINE Alu -9 303 136 225 156 302 2 chr4 4754763 4754826 -179533836 + MER5C DNA MER1_type 4 85 -104 2212 204 77 6 chr4 4755200 4755721 -179532941 - MER68 LTR ERV1 -2 560 3 2209 77 0 7 chr4 4755825 4756133 -179532529 + AluY SINE Alu 1 306 0 85 35 0 0 chr4 4756446 4756559 -179532103 + AT_rich Low_complexity Low_complexity 1 113 0 571 272 107 35 chr4 4756741 4757031 -179531631 + MLT1D LTR MaLR 195 505 0 653 150 0 35 chr4 4757456 4757569 -179531093 - FRAM SINE Alu -9 167 59 630 179 9 0 chr4 4758145 4758251 -179530411 - AluJo SINE Alu -170 142 36 202 293 9 57 chr4 4758421 4758527 -179530135 - MER5A DNA MER1_type -71 118 18 * 257 324 54 0 chr4 4758518 4758592 -179530070 - MIR3 SINE MIR -40 168 91 1470 161 53 5 chr4 4758681 4759011 -179529651 - Tigger4(Zombi) DNA MER2_type 0 2731 1 507 266 13 38 chr4 4759489 4759647 -179529015 - MIR SINE MIR -72 190 37 899 246 104 30 chr4 4765546 4765993 -179522669 + MLT1F1 LTR MaLR 2 540 -114 291 192 0 0 chr4 4767827 4767900 -179520762 + (TG)n Simple_repeat Simple_repeat 1 73 0 4275 118 12 17 chr4 4768275 4768461 -179520201 + MER41B LTR ERV1 1 186 -449 1796 130 92 0 chr4 4768461 4768745 -179519917 + AluSx SINE Alu 1 310 -2 4275 118 12 17 chr4 4768745 4769196 -179519466 + MER41B LTR ERV1 186 635 0 735 108 0 0 chr4 4769536 4769638 -179519024 + U6 snRNA snRNA 1 102 -5 1811 119 79 0 chr4 4769785 4770062 -179518600 - AluSx SINE Alu -13 299 1 3970 158 99 38 chr4 4770096 4770907 -179517755 + MER21B LTR ERV1 3 862 -1 1884 228 50 14 chr4 4770917 4771435 -179517227 - MER72 LTR ERV1 -174 548 12 2916 115 18 18 chr4 4771549 4771983 -179516679 - MER57B LTR ERV1 0 434 1 1207 72 63 31 chr4 4771983 4772195 -179516467 - MER57B-int LTR ERV1 0 7537 7279 748 86 23 31 chr4 4772195 4772323 -179516339 - LTR54B LTR ERV1 -367 131 5 14293 97 72 47 chr4 4772323 4772364 -179516298 - MER57B-int LTR ERV1 -387 7150 7112 6322 113 17 42 chr4 4772364 4772465 -179516197 + LTR13 LTR ERVK 1 103 -851 2515 46 0 0 chr4 4772465 4772784 -179515878 + AluY SINE Alu 1 319 0 6322 113 17 42 chr4 4772784 4773659 -179515003 + LTR13 LTR ERVK 103 954 0 14293 97 72 47 chr4 4773659 4774577 -179514085 - MER57B-int LTR ERV1 -425 7112 6219 2244 123 0 0 chr4 4774577 4774877 -179513785 + AluSx SINE Alu 1 300 -12 14293 97 72 47 chr4 4774877 4775342 -179513320 - MER57B-int LTR ERV1 -1318 6219 5767 399 41 0 0 chr4 4775342 4775391 -179513271 + (CA)n Simple_repeat Simple_repeat 1 49 0 596 96 48 0 chr4 4775391 4775474 -179513188 - AluSg/x SINE Alu -18 292 206 14293 97 72 47 chr4 4775474 4776407 -179512255 - MER57B-int LTR ERV1 -1769 5768 4646 407 91 0 30 chr4 4776407 4776466 -179512196 - MER57B-int LTR ERV1 -3194 4343 4284 459 0 0 0 chr4 4776466 4776517 -179512145 + (TG)n Simple_repeat Simple_repeat 2 52 0 2216 99 7 0 chr4 4776517 4776800 -179511862 - AluSp SINE Alu -28 285 1 4942 125 61 36 chr4 4776815 4777687 -179510975 + MER57-int LTR ERV1 1478 2371 -5166 849 153 27 0 chr4 4777686 4777836 -179510826 + MER57-int LTR ERV1 2476 2629 -4908 * 1672 82 55 8 chr4 4777832 4778089 -179510573 + MER57-int LTR ERV1 2781 3049 -4488 3512 92 31 81 chr4 4778094 4778144 -179510518 + MER57-int LTR ERV1 3248 3299 -4517 2157 110 3 23 chr4 4778144 4778444 -179510218 + AluSx SINE Alu 1 294 -18 3512 92 31 81 chr4 4778444 4778689 -179509973 + MER57-int LTR ERV1 3299 3555 -4261 2231 135 0 0 chr4 4778689 4779000 -179509662 + AluSx SINE Alu 2 312 0 3512 92 31 81 chr4 4779000 4779192 -179509470 + MER57-int LTR ERV1 3555 3755 -4061 2335 96 7 3 chr4 4779192 4779495 -179509167 - AluSq SINE Alu -9 304 1 3512 92 31 81 chr4 4779495 4779814 -179508848 + MER57-int LTR ERV1 3755 4143 -3673 2239 64 21 0 chr4 4779812 4780142 -179508520 + MER57-int LTR ERV1 3914 4250 -3287 * 2063 107 0 0 chr4 4780142 4780414 -179508248 - AluSg SINE Alu -2 308 37 812 251 116 28 chr4 4780514 4780869 -179507793 - MLT1J LTR MaLR -109 402 17 2115 156 51 0 chr4 4780880 4781251 -179507411 + MLT1B LTR MaLR 1 390 0 1287 239 134 19 chr4 4781347 4781811 -179506851 - MLT1E LTR MaLR -69 524 8 2152 99 20 3 chr4 4781884 4782177 -179506485 - AluSx SINE Alu -9 303 6 734 146 41 8 chr4 4782191 4782314 -179506348 - FRAM SINE Alu -22 154 28 452 234 6 34 chr4 4783256 4783431 -179505231 + (CCCCG)n Simple_repeat Simple_repeat 5 174 0 314 209 18 42 chr4 4783466 4783642 -179505020 + (CCCCG)n Simple_repeat Simple_repeat 1 171 0 28 61 0 0 chr4 4783840 4783889 -179504773 + GC_rich Low_complexity Low_complexity 1 49 0 555 16 0 0 chr4 4784109 4784173 -179504489 + (CAG)n Simple_repeat Simple_repeat 1 64 0 378 181 0 0 chr4 4784175 4784280 -179504382 + (CCG)n Simple_repeat Simple_repeat 2 106 0 23 33 0 0 chr4 4786074 4786104 -179502558 + AT_rich Low_complexity Low_complexity 1 30 0 2233 109 0 0 chr4 4786111 4786396 -179502266 + AluSx SINE Alu 6 290 -22 2170 119 3 0 chr4 4786638 4786923 -179501739 - AluSg SINE Alu -24 286 1 21 57 0 0 chr4 4786970 4787005 -179501657 + AT_rich Low_complexity Low_complexity 1 35 0 740 233 93 23 chr4 4787412 4787627 -179501035 - L2 LINE L2 0 3313 3084 23 0 0 0 chr4 4787643 4787666 -179500996 + AT_rich Low_complexity Low_complexity 1 23 0 418 98 16 0 chr4 4787669 4787730 -179500932 - U7 snRNA snRNA 0 63 2 1934 151 3 40 chr4 4787743 4787921 -179500741 - AluSx SINE Alu 0 312 150 2381 67 0 54 chr4 4787921 4788236 -179500426 - AluY SINE Alu -13 298 1 1934 151 3 40 chr4 4788236 4788381 -179500281 - AluSx SINE Alu -162 150 1 203 191 24 0 chr4 4788386 4788428 -179500234 - L2 LINE L2 -239 3074 3032 890 171 6 47 chr4 4788433 4788603 -179500059 - FRAM SINE Alu -13 163 1 977 273 88 33 chr4 4788604 4789100 -179499562 - L2 LINE L2 -277 3036 2503 2290 126 0 0 chr4 4789270 4789571 -179499091 - AluSq SINE Alu -12 301 1 3533 187 31 0 chr4 4789626 4790392 -179498270 - L1M4 LINE L1 -840 5306 4517 1203 181 78 4 chr4 4790392 4790663 -179497999 - MER58B DNA MER1_type -8 333 43 2476 74 6 3 chr4 4790718 4791029 -179497633 - AluSp SINE Alu -1 312 1 353 307 132 52 chr4 4791082 4791333 -179497329 - L1ME4a LINE L1 -11 6110 5840 282 304 236 20 chr4 4791683 4791831 -179496831 + MER5A DNA MER1_type 10 189 0 476 267 182 15 chr4 4792076 4792353 -179496309 - L2 LINE L2 -209 3104 2784 1505 185 25 25 chr4 4792402 4792688 -179495974 + AluJo SINE Alu 1 286 -26 495 0 0 0 chr4 4792693 4792748 -179495914 + (CA)n Simple_repeat Simple_repeat 2 56 0 2308 148 112 59 chr4 4792788 4793344 -179495318 + L1MD2 LINE L1 5484 6068 -291 805 147 7 0 chr4 4793345 4793481 -179495181 - AluSg/x SINE Alu 0 310 174 2161 123 3 3 chr4 4793558 4793851 -179494811 + AluSx SINE Alu 1 293 -19 2464 93 0 0 chr4 4793880 4794190 -179494472 + AluY SINE Alu 1 310 -1 2002 118 27 0 chr4 4794282 4794578 -179494084 - AluSx SINE Alu -8 304 1 396 294 28 28 chr4 4795234 4795411 -179493251 - MER104 DNA MER2_type -3 177 1 286 260 106 10 chr4 4795417 4795521 -179493141 + MIR SINE MIR 32 145 -117 1469 205 26 10 chr4 4795528 4795830 -179492832 + AluJo SINE Alu 1 307 -5 2057 98 60 0 chr4 4796967 4797252 -179491410 - AluSp SINE Alu -9 304 3 2107 92 55 0 chr4 4797294 4797587 -179491075 - AluY SINE Alu -2 309 1 874 212 106 32 chr4 4797595 4797878 -179490784 - L1MB3 LINE L1 -1 6182 5879 338 297 137 17 chr4 4798127 4798302 -179490360 + MIR SINE MIR 51 246 -16 2514 79 0 0 chr4 4798357 4798660 -179490002 - AluY SINE Alu -8 303 1 317 297 19 26 chr4 4798660 4798815 -179489847 - L1MEd LINE L1 -4846 1464 1311 421 282 89 81 chr4 4799277 4799970 -179488692 - L1MEd LINE L1 -4864 1255 580 2269 92 0 0 chr4 4800220 4800504 -179488158 + AluSc SINE Alu 5 288 -21 2044 196 56 0 chr4 4800746 4801139 -179487523 + MER47B DNA MER2_type 2 416 -2 1853 90 98 22 chr4 4801172 4801449 -179487213 + AluSg SINE Alu 6 303 -7 761 278 86 30 chr4 4801592 4802183 -179486479 - L1M4 LINE L1 -2202 3944 3321 2304 121 0 0 chr4 4802290 4802587 -179486075 + AluSg SINE Alu 1 297 -13 593 228 152 0 chr4 4802636 4802794 -179485868 - MER21B LTR ERV1 -677 186 5 635 179 0 34 chr4 4802853 4802970 -179485692 + FLAM_C SINE Alu 7 119 -24 1218 168 5 37 chr4 4804354 4804568 -179484094 + AluJo SINE Alu 1 207 -105 248 83 28 0 chr4 4804624 4804660 -179484002 + MER4A LTR ERV1 261 297 -367 1099 413 72 7 chr4 4804669 4804826 -179483836 - AluSx SINE Alu 0 312 167 1595 156 0 4 chr4 4804826 4805063 -179483599 - AluSx SINE Alu -76 236 1 1099 413 72 7 chr4 4805063 4805198 -179483464 - AluSx SINE Alu -145 167 1 842 189 12 0 chr4 4805198 4805367 -179483295 + L1M3 LINE L1 5625 5795 -388 248 141 188 0 chr4 4805372 4805436 -179483226 + L1MB3 LINE L1 6101 6176 -7 2349 148 69 29 chr4 4805440 4805920 -179482742 + L1MB8 LINE L1 5679 6177 -1 2427 86 3 0 chr4 4806203 4806507 -179482155 + AluSc SINE Alu 1 305 -4 371 357 30 0 chr4 4806608 4806807 -179481855 + L1MC/D LINE L1 5437 5641 -2167 301 381 81 6 chr4 4806824 4806849 -179481813 - L1MC4a LINE L1 -1901 5907 5885 2287 72 48 3 chr4 4806849 4807140 -179481522 - AluY SINE Alu -7 304 1 301 381 81 6 chr4 4807140 4807287 -179481375 - L1MC4a LINE L1 -1923 5885 5722 720 200 8 0 chr4 4807307 4807432 -179481230 - FLAM_A SINE Alu -7 126 1 2255 77 42 3 chr4 4807439 4807726 -179480936 - AluY SINE Alu -13 298 1 925 151 0 0 chr4 4807913 4808039 -179480623 + FLAM_C SINE Alu 4 129 -14 693 246 111 63 chr4 4808639 4808752 -179479910 - L2 LINE L2 -4 3309 3203 1876 122 48 56 chr4 4808752 4809130 -179479532 + THE1C LTR MaLR 1 375 0 693 246 111 63 chr4 4809130 4809350 -179479312 - L2 LINE L2 -110 3203 2960 214 281 112 0 chr4 4809837 4809926 -179478736 + L2 LINE L2 2315 2413 -901 209 333 16 0 chr4 4809927 4809990 -179478672 - L2 LINE L2 0 3272 3209 8239 150 71 11 chr4 4810613 4812114 -179476548 + MER52A LTR ERV1 90 1755 0 221 329 12 0 chr4 4812658 4812743 -179475919 - L2 LINE L2 -2 3270 3185 1277 178 15 118 chr4 4812968 4813145 -179475517 - AluJb SINE Alu -5 297 103 2366 64 4 4 chr4 4813145 4813426 -179475236 - AluSp SINE Alu -32 281 1 2109 116 0 44 chr4 4813430 4813611 -179475051 - AluSx SINE Alu -7 305 142 2348 87 17 3 chr4 4813611 4813909 -179474753 - AluY SINE Alu -9 302 1 2109 116 0 44 chr4 4813909 4814046 -179474616 - AluSx SINE Alu -170 142 1 1277 178 15 118 chr4 4814046 4814194 -179474468 - AluJb SINE Alu -202 100 1 344 257 0 18 chr4 4814837 4814946 -179473716 + L1 LINE L1 5174 5280 -866 1047 264 41 32 chr4 4814969 4815381 -179473281 + MLT1J1 LTR MaLR 68 446 0 2119 127 6 13 chr4 4815918 4816233 -179472429 + AluSp SINE Alu 1 313 0 490 133 20 10 chr4 4816318 4816416 -179472246 - LTR54 LTR ERV1 -2 508 410 1250 171 46 0 chr4 4816416 4816633 -179472029 + AluJo SINE Alu 86 312 0 216 158 0 0 chr4 4816642 4816680 -179471982 + GA-rich Low_complexity Low_complexity 1 38 0 1347 136 62 9 chr4 4816680 4817039 -179471623 - LTR54 LTR ERV1 -94 413 1 2413 77 0 0 chr4 4817548 4817834 -179470828 - AluSc SINE Alu -23 286 1 353 209 97 75 chr4 4817996 4818065 -179470597 + MLT1J2 LTR MaLR 59 125 -325 579 150 18 9 chr4 4818065 4818178 -179470484 + L1PB2 LINE L1 6037 6150 -1 353 209 97 75 chr4 4818178 4818242 -179470420 + MLT1J2 LTR MaLR 125 195 -255 332 233 125 33 chr4 4818261 4818381 -179470281 + L2 LINE L2 3141 3271 -1 198 309 21 32 chr4 4818379 4818473 -179470189 - MIR SINE MIR -157 105 13 * 192 40 0 0 chr4 4818473 4818498 -179470164 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 699 222 50 20 chr4 4818498 4818696 -179469966 - L2 LINE L2 -13 3300 3097 731 167 24 0 chr4 4818711 4818837 -179469825 + FLAM_A SINE Alu 1 129 -4 1145 305 206 7 chr4 4818907 4819752 -179468910 - L2 LINE L2 -408 2906 1894 2006 158 0 0 chr4 4819822 4820113 -179468549 + AluJb SINE Alu 1 291 -21 2023 188 34 36 chr4 4820779 4821247 -179467415 + MLT1C LTR MaLR 1 467 0 249 232 0 18 chr4 4821369 4821425 -179467237 - L2 LINE L2 0 3313 3259 2297 84 0 10 chr4 4821887 4822183 -179466479 + AluY SINE Alu 1 293 -18 2381 88 0 0 chr4 4822185 4822479 -179466183 - AluSc SINE Alu -15 294 1 1681 145 16 46 chr4 4822876 4823180 -179465482 + AluJo SINE Alu 1 295 -17 2543 80 3 3 chr4 4823180 4823514 -179465148 + AluSp SINE Alu 1 334 0 539 172 0 0 chr4 4823518 4823605 -179465057 + AluS SINE Alu 2 88 -225 372 367 50 10 chr4 4824130 4824329 -179464333 + L2 LINE L2 3107 3313 0 285 191 0 16 chr4 4824373 4824436 -179464226 + LTR67 LTR ERVL 457 518 -39 2271 77 7 24 chr4 4824766 4825063 -179463599 + AluSp SINE Alu 1 292 -21 2265 113 10 3 chr4 4825157 4825459 -179463203 + AluSx SINE Alu 1 304 -8 2026 164 28 3 chr4 4825590 4825944 -179462718 - MLT1A1 LTR MaLR -2 363 1 2563 50 3 0 chr4 4826425 4826724 -179461938 - AluY SINE Alu -11 300 1 573 142 31 63 chr4 4827159 4827286 -179461376 - FLAM_A SINE Alu -10 132 10 3350 80 120 35 chr4 4827594 4828142 -179460520 - LTR61 LTR ERV1 0 595 1 244 196 0 0 chr4 4828930 4828976 -179459686 + (CCG)n Simple_repeat Simple_repeat 3 48 0 26 50 0 0 chr4 4829186 4829226 -179459436 + GC_rich Low_complexity Low_complexity 1 40 0 21 57 0 0 chr4 4829577 4829612 -179459050 + GC_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr4 4830173 4830202 -179458460 + AT_rich Low_complexity Low_complexity 1 29 0 280 273 13 0 chr4 4830228 4830305 -179458357 - MIR SINE MIR -129 133 56 225 237 0 0 chr4 4830548 4830607 -179458055 + (TTGGGG)n Simple_repeat Simple_repeat 5 63 0 264 333 69 7 chr4 4841051 4841195 -179447467 + MIR SINE MIR 108 260 -2 30639 110 13 60 chr4 4841286 4843454 -179445208 + L1PA7 LINE L1 9 2279 -3875 2427 75 0 3 chr4 4843454 4843749 -179444913 + AluY SINE Alu 1 294 -17 30639 110 13 60 chr4 4843749 4845745 -179442917 + L1PA7 LINE L1 2279 3745 -2409 2051 119 36 23 chr4 4845745 4846048 -179442614 + AluSc SINE Alu 3 309 0 30639 110 13 60 chr4 4846048 4848349 -179440313 + L1PA7 LINE L1 3745 6154 0 2334 85 0 0 chr4 4848388 4848716 -179439946 + AluSc SINE Alu 1 328 0 323 236 181 31 chr4 4849137 4849264 -179439398 + MIR SINE MIR 117 262 0 343 279 67 77 chr4 4849977 4850275 -179438387 - L1MC5 LINE L1 -151 7810 7516 312 294 80 73 chr4 4850279 4850554 -179438108 + HAL1 LINE L1 1914 2190 -317 270 167 56 11 chr4 4850554 4850644 -179438018 + (TAA)n Simple_repeat Simple_repeat 2 95 0 270 248 191 0 chr4 4850645 4850750 -179437912 - MIR SINE MIR -2 260 136 2311 104 0 7 chr4 4851019 4851318 -179437344 + AluSx SINE Alu 2 298 -14 2569 71 0 3 chr4 4851669 4851979 -179436683 - AluY SINE Alu -2 309 1 2333 98 0 0 chr4 4853990 4854285 -179434377 + AluSg SINE Alu 1 295 -15 188 225 197 14 chr4 4854910 4854981 -179433681 - MIR SINE MIR -89 119 36 999 181 166 30 chr4 4856905 4857170 -179431492 - AluJo SINE Alu 0 302 2 2135 101 10 7 chr4 4858168 4858464 -179430198 - AluSx SINE Alu -15 297 1 23 33 0 0 chr4 4858671 4858701 -179429961 + AT_rich Low_complexity Low_complexity 1 30 0 2273 94 7 0 chr4 4858999 4859298 -179429364 - AluSx SINE Alu -11 301 1 713 187 0 22 chr4 4859298 4859432 -179429230 - AluJo SINE Alu -171 141 11 209 186 0 0 chr4 4860209 4860252 -179428410 + CT-rich Low_complexity Low_complexity 1 43 0 1820 169 3 3 chr4 4861620 4861921 -179426741 + AluJb SINE Alu 1 301 -11 2238 93 0 0 chr4 4862369 4862660 -179426002 + AluSx SINE Alu 1 291 -21 182 149 43 21 chr4 4864252 4864299 -179424363 + MIR SINE MIR 173 220 -42 2271 98 0 0 chr4 4866417 4866712 -179421950 + AluSp SINE Alu 1 295 -18 552 268 91 0 chr4 4867274 4867494 -179421168 + Charlie5 DNA MER1_type 2361 2600 -12 246 305 73 24 chr4 4870437 4870519 -179418143 + L2 LINE L2 3179 3264 -49 1695 152 11 14 chr4 4872331 4872608 -179416054 + AluJo SINE Alu 16 291 -21 1963 75 101 0 chr4 4872608 4872875 -179415787 - AluSp SINE Alu -19 294 1 3341 143 118 33 chr4 4874649 4875286 -179413376 - LTR8 LTR ERV1 0 691 1 253 280 40 0 chr4 4875437 4875512 -179413150 + MLT2F LTR ERVL 54 131 -532 329 289 47 0 chr4 4875706 4875834 -179412828 + MLT2F LTR ERVL 421 554 -109 324 199 5 117 chr4 4876359 4876555 -179412107 + G-rich Low_complexity Low_complexity 3 176 0 558 91 26 0 chr4 4976555 4976632 -179312030 + AluJ/FRAM SINE Alu 224 302 -10 2123 99 7 30 chr4 4976634 4976769 -179311893 + AluSq SINE Alu 2 139 -174 2292 61 0 51 chr4 4976769 4977080 -179311582 + AluY SINE Alu 1 295 -16 2123 99 7 30 chr4 4977080 4977247 -179311415 + AluSq SINE Alu 139 297 -16 21 82 0 0 chr4 5033159 5033208 -179255454 + AT_rich Low_complexity Low_complexity 1 49 0 284 233 0 14 chr4 5033248 5033321 -179255341 + MIR SINE MIR 66 137 -125 315 239 53 80 chr4 5033475 5033588 -179255074 - L2 LINE L2 -11 3302 3193 1669 157 3 25 chr4 5034500 5034786 -179253876 + AluJb SINE Alu 1 280 -32 303 93 0 0 chr4 5034789 5034832 -179253830 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 2268 88 20 0 chr4 5034836 5035131 -179253531 - AluSp SINE Alu -12 301 1 869 114 0 0 chr4 5035279 5035393 -179253269 - AluSp/q SINE Alu -25 288 175 296 272 60 87 chr4 5035396 5035835 -179252827 - L1M4 LINE L1 -2397 3749 3292 1723 151 28 14 chr4 5035863 5036148 -179252514 - AluJb SINE Alu -21 291 3 237 220 93 34 chr4 5036157 5036275 -179252387 - L1MC5 LINE L1 -30 7931 7807 358 245 101 52 chr4 5036284 5036611 -179252051 - L1M4 LINE L1 -2866 3280 2938 2062 130 13 3 chr4 5036642 5036943 -179251719 + AluSx SINE Alu 3 306 -6 2149 123 3 0 chr4 5036945 5037245 -179251417 + AluSx SINE Alu 1 301 -11 257 247 234 7 chr4 5037370 5037524 -179251138 - MER5A DNA MER1_type 0 189 1 1772 163 50 0 chr4 5038456 5038738 -179249924 - AluJb SINE Alu -16 296 1 2396 78 0 3 chr4 5040498 5040792 -179247870 - AluSc SINE Alu -14 295 3 2326 103 0 7 chr4 5040796 5041098 -179247564 - AluSx SINE Alu -12 300 1 22 0 0 0 chr4 5041102 5041124 -179247538 + AT_rich Low_complexity Low_complexity 1 22 0 260 222 0 16 chr4 5041656 5041719 -179246943 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 573 285 88 55 chr4 5041736 5041979 -179246683 + L1M4 LINE L1 2658 2891 -3255 1915 117 81 0 chr4 5041979 5042252 -179246410 - AluSx SINE Alu -17 295 1 573 285 88 55 chr4 5042252 5042279 -179246383 + L1M4 LINE L1 2891 2916 -3230 2316 97 0 0 chr4 5042279 5042601 -179246061 + AluSx SINE Alu 1 312 0 573 285 88 55 chr4 5042601 5042767 -179245895 + L1M4 LINE L1 2916 3075 -3071 2575 59 0 3 chr4 5042767 5043071 -179245591 + AluY SINE Alu 1 303 -8 573 285 88 55 chr4 5043071 5043114 -179245548 + L1M4 LINE L1 3075 3115 -3031 1744 183 0 13 chr4 5043114 5043426 -179245236 + AluJb SINE Alu 1 308 -4 573 285 88 55 chr4 5043426 5043446 -179245216 + L1M4 LINE L1 3110 3178 -2963 2388 100 0 3 chr4 5043446 5043757 -179244905 + AluSg SINE Alu 1 310 0 624 112 0 84 chr4 5043767 5043910 -179244752 + AluSq/x SINE Alu 3 133 -180 2199 136 3 0 chr4 5043912 5044222 -179244440 + AluJb SINE Alu 1 311 -1 1558 243 68 56 chr4 5044234 5044999 -179243663 - L1M4 LINE L1 -1057 5089 4316 1918 145 13 7 chr4 5045358 5045662 -179243000 - AluSx SINE Alu -4 308 3 251 83 0 0 chr4 5045677 5045713 -179242949 - Charlie1 DNA MER1_type -399 2362 2327 705 182 0 7 chr4 5045717 5045865 -179242797 - L1MB3 LINE L1 -1 6182 6036 1047 164 30 0 chr4 5045998 5046163 -179242499 + AluJo SINE Alu 120 289 -23 359 285 99 90 chr4 5046316 5046748 -179241914 - L2 LINE L2 -3 3310 2875 758 248 65 70 chr4 5046964 5047187 -179241475 + L2 LINE L2 1942 2165 -1149 1386 76 168 0 chr4 5047187 5047384 -179241278 + MER30 DNA MER1_type 1 230 0 758 248 65 70 chr4 5047384 5047439 -179241223 + L2 LINE L2 2165 2219 -1095 592 250 65 6 chr4 5047439 5047607 -179241055 + MER5B DNA MER1_type 1 178 0 758 248 65 70 chr4 5047607 5047755 -179240907 + L2 LINE L2 2219 2367 -947 401 139 97 14 chr4 5047851 5047923 -179240739 + AluJ/FLAM SINE Alu 5 82 -220 529 293 33 53 chr4 5048003 5048303 -179240359 + L2 LINE L2 2848 3141 -172 643 229 204 10 chr4 5048308 5048509 -179240153 + MIR SINE MIR 21 260 -2 292 303 115 0 chr4 5048528 5048650 -179240012 + L2 LINE L2 3178 3313 0 272 143 41 0 chr4 5049605 5049654 -179239008 - Alu SINE Alu -8 294 244 309 252 96 35 chr4 5050243 5050358 -179238304 + MIR SINE MIR 112 233 -29 627 226 15 0 chr4 5050380 5050513 -179238149 - FLAM_C SINE Alu -7 136 2 593 274 137 5 chr4 5050743 5050947 -179237715 + MIR SINE MIR 32 262 0 1621 172 11 0 chr4 5051603 5051864 -179236798 - AluJo SINE Alu -20 292 29 2355 102 0 3 chr4 5052009 5052312 -179236350 + AluSg SINE Alu 1 302 -8 2239 128 3 0 chr4 5052330 5052636 -179236026 + AluSx SINE Alu 1 307 -5 546 251 88 42 chr4 5052689 5053019 -179235643 + L1MEc LINE L1 1287 1631 -4765 752 130 9 17 chr4 5053033 5053148 -179235514 + AluJb SINE Alu 5 118 -194 22 0 0 0 chr4 5053148 5053170 -179235492 + AT_rich Low_complexity Low_complexity 1 22 0 305 100 0 0 chr4 5053188 5053228 -179235434 - AluSp SINE Alu -124 179 140 1817 161 10 3 chr4 5053231 5053522 -179235140 + AluJb SINE Alu 11 303 -9 322 190 0 0 chr4 5053526 5053584 -179235078 + FAM SINE Alu 120 177 -2 725 267 91 64 chr4 5053951 5053970 -179234692 + L1MEc LINE L1 2298 2315 -3900 1656 206 88 30 chr4 5053970 5054445 -179234217 + MLT1D LTR MaLR 3 505 0 725 267 91 64 chr4 5054445 5054865 -179233797 + L1MEc LINE L1 2315 2722 -3493 213 65 0 0 chr4 5054865 5054896 -179233766 + (CTTG)n Simple_repeat Simple_repeat 2 32 0 2110 120 0 7 chr4 5054897 5055180 -179233482 - AluSx SINE Alu -31 281 1 725 267 91 64 chr4 5055180 5055316 -179233346 + L1MEc LINE L1 2722 2853 -3362 2215 115 0 0 chr4 5055316 5055612 -179233050 + AluSq SINE Alu 1 296 -17 725 267 91 64 chr4 5055612 5055816 -179232846 + L1MEc LINE L1 2853 3102 -3113 2155 107 10 3 chr4 5055822 5056112 -179232550 + AluSx SINE Alu 10 301 -11 1230 182 5 0 chr4 5056287 5056485 -179232177 + AluJb SINE Alu 93 291 -21 1437 228 100 20 chr4 5056536 5056935 -179231727 - MLT1C LTR MaLR 0 467 37 563 298 76 58 chr4 5056965 5057196 -179231466 - MER57-int LTR ERV1 -1796 2851 2607 2544 50 0 13 chr4 5057196 5057498 -179231164 + AluSc SINE Alu 1 298 -11 563 298 76 58 chr4 5057498 5057699 -179230963 - MER57-int LTR ERV1 -2040 2607 2411 2451 81 0 0 chr4 5057744 5058041 -179230621 + AluSg1 SINE Alu 1 297 -12 621 247 98 60 chr4 5058051 5058156 -179230506 - MER57-int LTR ERV1 -7238 299 199 2457 63 0 3 chr4 5058156 5058456 -179230206 - AluY SINE Alu -12 299 1 621 247 98 60 chr4 5058456 5058585 -179230077 - MER57-int LTR ERV1 -7338 199 56 863 102 0 0 chr4 5058695 5058810 -179229852 + AluJb SINE Alu 172 280 -32 231 36 0 0 chr4 5058810 5058838 -179229824 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 1733 173 3 10 chr4 5058841 5059147 -179229515 + AluJo SINE Alu 1 304 -8 1564 197 62 75 chr4 5059153 5059477 -179229185 + MSTD LTR MaLR 1 321 -75 2277 90 3 0 chr4 5059477 5059787 -179228875 + AluY SINE Alu 1 311 0 1564 197 62 75 chr4 5059787 5059863 -179228799 + MSTD LTR MaLR 321 396 0 2238 96 0 0 chr4 5060013 5060306 -179228356 + AluSx SINE Alu 1 293 -19 2972 233 170 101 chr4 5060678 5060710 -179227952 - HAL1 LINE L1 0 2507 2479 1860 168 23 13 chr4 5060710 5061019 -179227643 - AluJo SINE Alu 0 312 1 2972 233 170 101 chr4 5061019 5061848 -179226814 - HAL1 LINE L1 -28 2479 1709 2102 118 0 3 chr4 5061848 5062144 -179226518 - AluSq SINE Alu -18 295 1 2972 233 170 101 chr4 5062144 5062296 -179226366 - HAL1 LINE L1 -798 1709 1569 2173 101 34 0 chr4 5062296 5062592 -179226070 - AluSx SINE Alu -6 306 1 2972 233 170 101 chr4 5062592 5062749 -179225913 - HAL1 LINE L1 -938 1569 1424 854 146 0 0 chr4 5062749 5062879 -179225783 - FLAM_A SINE Alu -5 137 8 2972 233 170 101 chr4 5062879 5063680 -179224982 - HAL1 LINE L1 -1083 1424 258 231 239 28 28 chr4 5065189 5065260 -179223402 - L2 LINE L2 0 3272 3202 248 286 32 56 chr4 5065296 5065422 -179223240 + L2 LINE L2 2369 2491 -823 1829 204 34 50 chr4 5065425 5065930 -179222732 - MLT1D LTR MaLR 0 505 9 267 348 27 27 chr4 5065943 5066055 -179222607 + L2 LINE L2 2502 2613 -701 618 256 133 5 chr4 5066055 5066321 -179222341 + L2 LINE L2 2726 3029 -284 1828 117 10 52 chr4 5066544 5066851 -179221811 + AluJb SINE Alu 1 294 -18 2331 64 7 7 chr4 5066855 5067152 -179221510 + AluY SINE Alu 1 297 -14 1561 87 5 5 chr4 5067811 5068018 -179220644 + AluSg/x SINE Alu 82 288 -24 211 221 29 0 chr4 5068107 5068175 -179220487 + (CGGGG)n Simple_repeat Simple_repeat 4 73 0 1014 87 25 6 chr4 5068962 5069123 -179219539 - pTR5 LTR ERV1 -2046 392 229 * 2850 116 112 71 chr4 5069100 5070154 -179218508 + pTR5 LTR ERV1 970 2437 -1 344 339 23 18 chr4 5070224 5070395 -179218267 + L2 LINE L2 2848 3019 -294 248 330 62 0 chr4 5070863 5070975 -179217687 - L2 LINE L2 -296 2976 2858 264 334 85 5 chr4 5070980 5071180 -179217482 - L2 LINE L2 -257 3015 2804 1246 221 202 12 chr4 5071480 5071954 -179216708 - MER77 LTR ERV1 -15 547 1 2111 127 13 0 chr4 5071991 5072290 -179216372 + AluSx SINE Alu 1 303 -9 213 39 0 0 chr4 5072302 5072328 -179216334 + (GGGA)n Simple_repeat Simple_repeat 3 28 0 2311 89 0 0 chr4 5072493 5072796 -179215866 - AluSx SINE Alu -9 303 1 658 237 74 86 chr4 5073026 5073085 -179215577 + MER46C DNA MER2_type 2 60 -278 1769 167 13 7 chr4 5073085 5073390 -179215272 - AluJo SINE Alu -5 307 1 658 237 74 86 chr4 5073390 5073566 -179215096 + MER46C DNA MER2_type 60 237 -101 2592 222 38 11 chr4 5073566 5074092 -179214570 - MLT1F LTR MaLR -2 540 1 658 237 74 86 chr4 5074092 5074146 -179214516 + MER46C DNA MER2_type 237 290 -48 2106 93 3 7 chr4 5074146 5074436 -179214226 + AluSx SINE Alu 1 289 -23 270 81 0 0 chr4 5074437 5074474 -179214188 + (CAATA)n Simple_repeat Simple_repeat 1 37 0 658 237 74 86 chr4 5074474 5074517 -179214145 + MER46C DNA MER2_type 289 334 -4 234 253 46 58 chr4 5074531 5074618 -179214044 - MIR SINE MIR -67 141 56 210 301 49 77 chr4 5074689 5074832 -179213830 - MIR SINE MIR -24 238 100 2287 72 3 10 chr4 5075288 5075594 -179213068 + AluSq SINE Alu 9 312 -1 225 199 21 28 chr4 5075962 5076103 -179212559 + (CGGGG)n Simple_repeat Simple_repeat 5 144 0 22 35 0 0 chr4 5076144 5076173 -179212489 + GC_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr4 5076178 5076209 -179212453 + GC_rich Low_complexity Low_complexity 1 31 0 1785 158 10 3 chr4 5077484 5077782 -179210880 + AluJb SINE Alu 1 300 -12 2426 54 3 0 chr4 5077795 5078092 -179210570 + AluY SINE Alu 3 300 -11 507 321 124 57 chr4 5078361 5078626 -179210036 - L1ME4a LINE L1 -8 6113 5831 1961 142 0 16 chr4 5079034 5079350 -179209312 - AluJo SINE Alu 0 312 2 1534 162 0 87 chr4 5079407 5079740 -179208922 - AluJo SINE Alu -2 310 7 2182 103 3 3 chr4 5080341 5080684 -179207978 - AluSg SINE Alu 0 343 1 1895 97 19 11 chr4 5080732 5080999 -179207663 - AluJo SINE Alu -23 289 21 343 187 1 0 chr4 5081001 5081074 -179207588 + MLT1C LTR MaLR 305 372 -2 575 118 0 32 chr4 5081736 5081829 -179206833 + FLAM_A SINE Alu 45 134 -8 432 186 58 0 chr4 5081856 5081942 -179206720 - AluJb SINE Alu -21 291 201 * 765 218 0 0 chr4 5081934 5082067 -179206595 + AluJo/FRAM SINE Alu 153 285 -27 356 0 23 0 chr4 5082067 5082111 -179206551 + (TAA)n Simple_repeat Simple_repeat 2 46 0 801 172 60 0 chr4 5082406 5082540 -179206122 + AluJb SINE Alu 1 142 -170 183 274 24 113 chr4 5082559 5082683 -179205979 + L2 LINE L2 3015 3127 -145 228 67 0 0 chr4 5083987 5084017 -179204645 + (TG)n Simple_repeat Simple_repeat 1 30 0 357 356 0 6 chr4 5084670 5084847 -179203815 + (CA)n Simple_repeat Simple_repeat 1 176 0 180 339 76 8 chr4 5084941 5085059 -179203603 - MIR SINE MIR -34 228 103 216 179 0 0 chr4 5085175 5085214 -179203448 - MIR SINE MIR -157 105 67 1278 269 75 18 chr4 5089740 5090182 -179198480 + MLT1C LTR MaLR 1 467 0 214 329 13 0 chr4 5091581 5091657 -179197005 + (GGGTG)n Simple_repeat Simple_repeat 4 80 0 194 231 0 0 chr4 5092131 5092170 -179196492 + MIR SINE MIR 109 147 -61 273 169 70 28 chr4 5094640 5094711 -179193951 + MIR SINE MIR 48 121 -87 314 356 0 11 chr4 5095507 5095597 -179193065 + L1MC4 LINE L1 6615 6703 -1339 * 378 260 0 13 chr4 5095517 5095618 -179193044 - L1MCa LINE L1 -1339 6983 1996 367 356 0 0 chr4 5095599 5095689 -179192973 + L1MC4 LINE L1 6614 6703 -1339 * 403 311 0 0 chr4 5095681 5095771 -179192891 - L1MC4 LINE L1 -1339 6703 6614 420 20 0 0 chr4 5095773 5095822 -179192840 + (CA)n Simple_repeat Simple_repeat 2 50 0 2032 113 18 0 chr4 5095826 5096110 -179192552 - AluSx SINE Alu -23 289 1 1966 132 7 0 chr4 5096112 5096401 -179192261 - AluSx SINE Alu -21 291 1 246 216 68 27 chr4 5102041 5102115 -179186547 - MIR SINE MIR -97 165 89 483 87 87 0 chr4 5102743 5102812 -179185850 + AluSg SINE Alu 2 76 -233 344 358 37 10 chr4 5103133 5103306 -179185356 - MIR SINE MIR -61 147 7 233 154 0 22 chr4 5104186 5104248 -179184414 - MIR SINE MIR -114 148 90 286 191 0 43 chr4 5105167 5105261 -179183401 + (CCCCG)n Simple_repeat Simple_repeat 2 91 0 571 302 208 12 chr4 5108261 5108779 -179179883 + L2 LINE L2 2414 3033 -280 1575 127 89 55 chr4 5108866 5109157 -179179505 - AluJb SINE Alu -7 305 5 1648 98 9 0 chr4 5112041 5112265 -179176397 + AluSg SINE Alu 84 309 -1 961 184 107 8 chr4 5112274 5112518 -179176144 - MER57A LTR ERV1 -4 399 132 270 284 0 0 chr4 5112626 5112700 -179175962 - MER57A LTR ERV1 -288 115 42 888 301 17 23 chr4 5112712 5113064 -179175598 - MER57-int LTR ERV1 -394 7143 6794 2169 101 10 0 chr4 5113150 5113456 -179175206 + AluSx SINE Alu 1 309 -3 1201 131 0 5 chr4 5113467 5113666 -179174996 + L1PBa LINE L1 1 198 -6665 * 9929 95 47 16 chr4 5113662 5115814 -179172848 + L1PBa LINE L1 995 3404 -3458 507 141 10 20 chr4 5115814 5115913 -179172749 + MER4A LTR ERV1 1 98 -566 * 1552 131 3 83 chr4 5115908 5116289 -179172373 + MER4A LTR ERV1 256 664 0 4579 131 86 78 chr4 5116292 5116947 -179171715 + MER4A-int LTR ERV1 1 650 -4365 351 0 0 0 chr4 5116947 5116986 -179171676 + (CA)n Simple_repeat Simple_repeat 1 39 0 4579 131 86 78 chr4 5116986 5117076 -179171586 + MER4A-int LTR ERV1 650 738 -4277 1902 81 0 0 chr4 5117076 5117312 -179171350 - AluSx SINE Alu -76 236 1 4579 131 86 78 chr4 5117312 5117732 -179170930 + MER4A-int LTR ERV1 738 1154 -3861 2365 97 0 0 chr4 5117732 5118041 -179170621 - AluY SINE Alu -2 309 1 4579 131 86 78 chr4 5118041 5118121 -179170541 + MER4A-int LTR ERV1 1154 721 -4294 2129 130 0 3 chr4 5118121 5118421 -179170241 - AluSx SINE Alu -13 299 1 4579 131 86 78 chr4 5118421 5118487 -179170175 + MER4A-int LTR ERV1 720 784 -4231 1599 69 15 0 chr4 5118513 5118716 -179169946 + AluSq SINE Alu 1 206 -107 528 128 0 11 chr4 5118727 5118821 -179169841 + MER4-int LTR ERV1 3961 4053 -2545 2015 192 39 94 chr4 5118821 5118915 -179169747 + LTR9 LTR ERV1 1 99 -513 2211 128 0 0 chr4 5118915 5119227 -179169435 + AluSq SINE Alu 1 312 -1 2015 192 39 94 chr4 5119227 5119768 -179168894 + LTR9 LTR ERV1 99 601 -11 4442 77 42 32 chr4 5119771 5120204 -179168458 + MER4-int LTR ERV1 4050 4496 -2102 2122 138 0 6 chr4 5120204 5120516 -179168146 + AluSx SINE Alu 3 312 0 4442 77 42 32 chr4 5120516 5120837 -179167825 + MER4-int LTR ERV1 4496 4812 -1786 2362 93 0 0 chr4 5120837 5121148 -179167514 + AluY SINE Alu 1 311 0 2210 120 3 0 chr4 5121353 5121653 -179167009 + AluSx SINE Alu 1 301 -11 1641 154 50 0 chr4 5121693 5121973 -179166689 + AluJo SINE Alu 8 301 -11 2291 100 0 0 chr4 5122015 5122316 -179166346 - AluSx SINE Alu -11 301 1 488 252 8 15 chr4 5122512 5122643 -179166019 - MER57-int LTR ERV1 -1347 6190 6061 851 270 34 78 chr4 5122669 5122762 -179165900 + L1ME3A LINE L1 5665 5761 -409 1282 97 126 14 chr4 5122762 5122969 -179165693 + MER30 DNA MER1_type 1 230 0 851 270 34 78 chr4 5122969 5123404 -179165258 + L1ME3A LINE L1 5761 6170 0 1806 114 64 0 chr4 5124185 5124466 -179164196 + AluSx SINE Alu 1 299 -13 255 239 0 5 chr4 5124642 5124707 -179163955 + MIR3 SINE MIR 92 156 -52 325 176 54 0 chr4 5124944 5125018 -179163644 - MIR SINE MIR -87 121 44 203 271 0 0 chr4 5125014 5125062 -179163600 + MIR SINE MIR 108 155 -107 * 2228 100 0 3 chr4 5125587 5125896 -179162766 + AluSx SINE Alu 1 308 -4 250 320 82 0 chr4 5126989 5127086 -179161576 + MIR SINE MIR 2 106 -156 247 264 0 0 chr4 5127848 5127901 -179160761 + MIR SINE MIR 94 146 -62 811 165 0 8 chr4 5128074 5128207 -179160455 + FLAM_C SINE Alu 1 132 -1 212 290 0 0 chr4 5128281 5128343 -179160319 + G-rich Low_complexity Low_complexity 3 64 0 2125 119 0 3 chr4 5130850 5131152 -179157510 + AluSx SINE Alu 1 301 -11 195 42 0 0 chr4 5133294 5133318 -179155344 + (GGGA)n Simple_repeat Simple_repeat 4 27 0 183 80 0 0 chr4 5133439 5133464 -179155198 + (GGATG)n Simple_repeat Simple_repeat 3 27 0 273 302 0 0 chr4 5134344 5134430 -179154232 + (CA)n Simple_repeat Simple_repeat 1 86 0 231 282 0 0 chr4 5134441 5134590 -179154072 + (CA)n Simple_repeat Simple_repeat 2 150 0 409 306 0 16 chr4 5134662 5134845 -179153817 + (CA)n Simple_repeat Simple_repeat 1 180 0 338 173 29 29 chr4 5134858 5135031 -179153631 + (CA)n Simple_repeat Simple_repeat 2 174 0 205 199 28 28 chr4 5135102 5135243 -179153419 + (CA)n Simple_repeat Simple_repeat 2 142 0 271 178 30 30 chr4 5135878 5136013 -179152649 + (TG)n Simple_repeat Simple_repeat 2 136 0 260 274 9 19 chr4 5136026 5136132 -179152530 + (TG)n Simple_repeat Simple_repeat 2 106 0 1037 127 13 6 chr4 5138953 5139111 -179149551 + AluSg/x SINE Alu 135 293 -17 1258 139 42 14 chr4 5139118 5139322 -179149340 + AluJb SINE Alu 87 299 -13 2161 114 10 0 chr4 5139322 5139629 -179149033 + AluSx SINE Alu 1 310 -2 1258 139 42 14 chr4 5139629 5139640 -179149022 + AluJb SINE Alu 299 308 -4 1718 140 66 14 chr4 5139642 5139928 -179148734 + AluJb SINE Alu 1 301 -11 1247 153 0 23 chr4 5142047 5142263 -179146399 + AluJo SINE Alu 87 297 -15 1403 166 50 13 chr4 5142264 5142565 -179146097 + AluJo SINE Alu 1 312 0 44 75 0 0 chr4 5143165 5143258 -179145404 + GC_rich Low_complexity Low_complexity 1 93 0 22 35 0 0 chr4 5143332 5143361 -179145301 + GC_rich Low_complexity Low_complexity 1 29 0 3074 188 57 7 chr4 5144487 5145143 -179143519 + L1M4 LINE L1 3573 4272 -1874 2068 82 53 4 chr4 5145143 5145424 -179143238 + AluSq SINE Alu 1 295 -18 3074 188 57 7 chr4 5145424 5145507 -179143155 + L1M4 LINE L1 4272 4349 -1797 2200 106 0 3 chr4 5145511 5145812 -179142850 + AluSg SINE Alu 11 310 0 2178 128 3 0 chr4 5145822 5146128 -179142534 + AluSx SINE Alu 1 307 -5 445 282 75 33 chr4 5146159 5146521 -179142141 + L1MEc LINE L1 1265 1641 -4755 764 143 8 17 chr4 5146521 5146640 -179142022 + AluJb SINE Alu 1 118 -194 23 0 0 0 chr4 5146640 5146663 -179141999 + AT_rich Low_complexity Low_complexity 1 23 0 280 100 0 0 chr4 5146681 5146721 -179141941 - AluSp SINE Alu -124 179 140 1780 161 10 3 chr4 5146724 5147015 -179141647 + AluJb SINE Alu 11 303 -9 290 190 0 0 chr4 5147019 5147077 -179141585 + FAM SINE Alu 120 177 -2 365 383 83 31 chr4 5147086 5147412 -179141250 + L1MEc LINE L1 1918 2260 -4136 492 309 87 35 chr4 5147422 5147463 -179141199 + L1MEc LINE L1 2272 2309 -3906 1755 206 88 30 chr4 5147463 5147938 -179140724 + MLT1D LTR MaLR 3 505 0 492 309 87 35 chr4 5147938 5148358 -179140304 + L1MEc LINE L1 2309 2706 -3509 180 97 0 0 chr4 5148358 5148389 -179140273 + (CTTG)n Simple_repeat Simple_repeat 2 32 0 2037 120 0 7 chr4 5148390 5148673 -179139989 - AluSx SINE Alu -31 281 1 492 309 87 35 chr4 5148673 5148809 -179139853 + L1MEc LINE L1 2706 2833 -3382 2159 128 0 0 chr4 5148809 5149121 -179139541 + AluSq SINE Alu 1 312 -1 492 309 87 35 chr4 5149121 5149309 -179139353 + L1MEc LINE L1 2833 3102 -3113 2080 107 10 3 chr4 5149315 5149605 -179139057 + AluSx SINE Alu 10 301 -11 1129 165 17 48 chr4 5149788 5150018 -179138644 + AluJo SINE Alu 82 304 -8 1404 123 0 5 chr4 5150186 5150574 -179138088 + AluSg/x SINE Alu 102 488 0 2330 70 20 0 chr4 5150577 5150875 -179137787 + AluSp SINE Alu 1 304 -9 272 247 34 22 chr4 5151395 5151484 -179137178 - MIR SINE MIR -105 157 68 822 210 13 6 chr4 5151492 5151649 -179137013 + FRAM SINE Alu 1 150 -26 1983 170 29 52 chr4 5151649 5151843 -179136819 - L1MB7 LINE L1 -57 6127 5930 2113 104 6 41 chr4 5151843 5151988 -179136674 + AluSx SINE Alu 1 150 -162 2487 45 0 0 chr4 5151988 5152280 -179136382 + AluY SINE Alu 1 292 -19 2113 104 6 41 chr4 5152280 5152450 -179136212 + AluSx SINE Alu 150 305 -7 1983 170 29 52 chr4 5152450 5152737 -179135925 - L1MB7 LINE L1 -254 5930 5657 245 196 216 21 chr4 5153465 5153562 -179135100 - MIR SINE MIR 0 262 147 417 313 89 0 chr4 5153583 5153762 -179134900 + L1MC/D LINE L1 5505 5699 -422 404 301 43 0 chr4 5153773 5153936 -179134726 + L1MC5 LINE L1 5567 5736 -2072 1395 221 3 33 chr4 5153936 5154239 -179134423 + AluJo SINE Alu 1 294 -18 2222 105 7 0 chr4 5154486 5154781 -179133881 - AluSx SINE Alu -15 297 1 1582 150 6 27 chr4 5154795 5155151 -179133511 + MER4A LTR ERV1 257 663 -1 1873 108 75 0 chr4 5155290 5155568 -179133094 - AluSq SINE Alu -14 299 1 2421 70 0 6 chr4 5155568 5155879 -179132783 - AluY SINE Alu -1 310 1 600 210 148 31 chr4 5155879 5156041 -179132621 - AluJb SINE Alu -11 301 121 670 241 47 4 chr4 5156041 5156277 -179132385 + L1MC5 LINE L1 6985 7230 -731 588 244 189 13 chr4 5156324 5156706 -179131956 + L1MC5 LINE L1 7304 7752 -209 2425 52 0 0 chr4 5157344 5157633 -179131029 + AluSc SINE Alu 1 289 -20 180 218 36 0 chr4 5157701 5157756 -179130906 + L2 LINE L2 2950 3006 -266 297 255 21 7 chr4 5158532 5158677 -179129985 + (CCG)n Simple_repeat Simple_repeat 3 149 0 426 234 32 0 chr4 5159768 5159862 -179128800 + L1MB3 LINE L1 5392 5488 -686 696 191 28 7 chr4 5159862 5160003 -179128659 + BC200 scRNA scRNA 2 145 -55 2917 156 125 6 chr4 5160035 5160289 -179128373 + L1MB3 LINE L1 5478 5700 -483 2048 113 13 27 chr4 5160289 5160589 -179128073 - AluJo SINE Alu -3 309 14 2917 156 125 6 chr4 5160589 5160964 -179127698 + L1MB3 LINE L1 5700 6182 -1 235 83 0 0 chr4 5160968 5161004 -179127658 + Charlie1 DNA MER1_type 2327 2362 -399 1949 145 13 7 chr4 5161019 5161323 -179127339 + AluSx SINE Alu 3 308 -4 425 291 193 64 chr4 5161335 5161692 -179126970 + L1ME LINE L1 1893 2295 -4101 1829 237 88 50 chr4 5161692 5162460 -179126202 + L1ME LINE L1 4395 5133 -1098 2260 132 3 0 chr4 5162460 5162771 -179125891 - AluJb SINE Alu 0 312 1 1829 237 88 50 chr4 5162771 5162857 -179125805 + L1ME LINE L1 5133 5214 -1017 1600 187 17 27 chr4 5162857 5163151 -179125511 + AluJo SINE Alu 7 297 -15 1829 237 88 50 chr4 5163151 5163257 -179125405 + L1ME LINE L1 5214 5315 -916 1848 151 20 7 chr4 5163257 5163555 -179125107 + AluJb SINE Alu 11 312 0 1829 237 88 50 chr4 5163555 5163798 -179124864 + L1ME LINE L1 5315 5645 -586 918 139 0 21 chr4 5163850 5163994 -179124668 - AluJb SINE Alu -171 141 1 1699 143 3 44 chr4 5164093 5164430 -179124232 + AluSx SINE Alu 1 325 0 1966 145 10 19 chr4 5164459 5164770 -179123892 - AluJo SINE Alu 0 312 5 307 269 111 0 chr4 5164861 5164969 -179123693 - L2 LINE L2 -4 3309 3190 282 341 22 37 chr4 5165090 5165225 -179123437 - L3 LINE CR1 -22 1555 1423 340 305 130 11 chr4 5165313 5165490 -179123172 - L3 LINE CR1 -175 1402 1205 382 259 111 44 chr4 5165506 5165641 -179123021 + MIR SINE MIR 4 147 -115 2135 116 23 13 chr4 5165852 5166155 -179122507 - AluSx SINE Alu -6 306 1 885 153 0 29 chr4 5166182 5166319 -179122343 - FLAM_C SINE Alu 0 133 1 2244 99 3 7 chr4 5166614 5166917 -179121745 + AluY SINE Alu 1 302 -9 524 297 80 42 chr4 5166917 5167106 -179121556 - L1ME LINE L1 -696 5468 5288 2181 114 17 0 chr4 5167106 5167405 -179121257 - AluSx SINE Alu -8 304 1 524 297 80 42 chr4 5167405 5167485 -179121177 - L1ME LINE L1 -876 5288 5212 2035 131 10 10 chr4 5167485 5167782 -179120880 - AluSx SINE Alu -15 297 1 524 297 80 42 chr4 5167782 5168334 -179120328 - L1ME LINE L1 -952 5212 4615 2044 124 3 7 chr4 5168604 5168924 -179119738 + AluSx SINE Alu 1 319 0 1852 132 0 62 chr4 5168946 5169270 -179119392 + AluSx SINE Alu 1 305 0 388 260 149 22 chr4 5170643 5170824 -179117838 - L2 LINE L2 -1 3312 3109 2592 44 0 3 chr4 5171415 5171712 -179116950 + AluY SINE Alu 1 296 -15 188 323 127 61 chr4 5171829 5172340 -179116322 - L2 LINE L2 -1903 1411 867 741 172 112 0 chr4 5172835 5172969 -179115693 + FAM SINE Alu 1 149 -36 250 218 119 0 chr4 5173122 5173223 -179115439 + L1ME4a LINE L1 2929 3041 -3105 23 33 0 0 chr4 5173270 5173300 -179115362 + AT_rich Low_complexity Low_complexity 1 30 0 2458 82 0 0 chr4 5173354 5173659 -179115003 + AluY SINE Alu 1 305 -6 671 188 0 8 chr4 5173674 5173802 -179114860 + FRAM SINE Alu 49 175 -1 377 275 25 0 chr4 5173812 5173932 -179114730 + L1ME4a LINE L1 3850 3972 -2174 * 530 191 143 74 chr4 5173931 5174162 -179114500 + L1MC5 LINE L1 6907 7153 -808 2088 134 3 7 chr4 5174163 5174470 -179114192 + AluSx SINE Alu 1 306 -6 636 251 129 8 chr4 5175523 5175778 -179112884 + L1ME4a LINE L1 5488 5773 -348 443 208 135 79 chr4 5175894 5175946 -179112716 + L1ME4a LINE L1 5933 5981 -140 2427 99 0 3 chr4 5175946 5176258 -179112404 + AluSx SINE Alu 1 311 -1 443 208 135 79 chr4 5176258 5176383 -179112279 + L1ME4a LINE L1 5981 6120 -1 2727 48 0 0 chr4 5176551 5176862 -179111800 + AluY SINE Alu 1 311 0 1646 133 0 4 chr4 5177310 5177543 -179111119 + AluSx SINE Alu 1 232 -80 1244 99 0 0 chr4 5177543 5177695 -179110967 + AluSg/x SINE Alu 141 292 -20 293 340 30 10 chr4 5177882 5177982 -179110680 - L2 LINE L2 -32 3240 3139 577 269 159 28 chr4 5178166 5178530 -179110132 + L2 LINE L2 661 1072 -2242 848 161 0 0 chr4 5178558 5178682 -179109980 - FRAM SINE Alu -52 124 1 382 205 60 0 chr4 5178701 5178784 -179109878 + L2 LINE L2 3199 3286 -27 916 312 107 48 chr4 5178859 5179349 -179109313 + L2 LINE L2 2432 2962 -351 1814 132 70 0 chr4 5179349 5179622 -179109040 - AluJb SINE Alu -20 292 1 916 312 107 48 chr4 5179622 5179725 -179108937 + L2 LINE L2 2962 3058 -255 358 213 96 0 chr4 5179821 5179915 -179108747 + L1ME3 LINE L1 6053 6155 -7 219 304 101 0 chr4 5179939 5180018 -179108644 + L2 LINE L2 3215 3301 -12 2338 96 0 10 chr4 5180306 5180473 -179108189 - AluSx SINE Alu -12 300 136 2447 64 0 10 chr4 5180473 5180771 -179107891 - AluY SINE Alu -16 295 1 2338 96 0 10 chr4 5180771 5180906 -179107756 - AluSx SINE Alu -176 136 1 1596 184 0 7 chr4 5182100 5182377 -179106285 - AluJb SINE Alu -33 279 5 495 219 219 14 chr4 5182380 5182526 -179106136 - MER5A DNA MER1_type -3 186 11 2404 79 7 0 chr4 5182698 5183001 -179105661 - AluSx SINE Alu -7 305 1 1756 167 0 20 chr4 5183092 5183385 -179105277 - AluJo SINE Alu -12 300 14 1839 174 7 0 chr4 5184035 5184329 -179104333 + AluSx SINE Alu 2 297 -15 32 26 0 0 chr4 5184418 5184457 -179104205 + AT_rich Low_complexity Low_complexity 1 39 0 1640 183 7 14 chr4 5184466 5184761 -179103901 + AluJb SINE Alu 1 293 -19 492 215 51 67 chr4 5185177 5185372 -179103290 + L2 LINE L2 2550 2741 -573 485 155 21 70 chr4 5185380 5185522 -179103140 + L1MC5 LINE L1 7540 7674 -287 271 314 105 12 chr4 5185537 5185709 -179102953 + L1MC5 LINE L1 7720 7907 -54 22 35 0 0 chr4 5185856 5185885 -179102777 + AT_rich Low_complexity Low_complexity 1 29 0 2395 81 0 10 chr4 5186055 5186363 -179102299 + AluY SINE Alu 1 305 -6 2395 161 64 7 chr4 5187737 5188177 -179100485 + MLT1C LTR MaLR 1 465 -2 181 286 0 0 chr4 5188350 5188392 -179100270 + L2 LINE L2 3221 3262 -10 268 302 30 124 chr4 5188426 5188724 -179099938 + L2 LINE L2 2991 3260 -12 215 343 14 0 chr4 5189432 5189505 -179099157 - MIR SINE MIR -169 93 20 231 356 20 10 chr4 5189770 5189871 -179098791 - MIR SINE MIR -148 114 13 1890 150 3 3 chr4 5190233 5190520 -179098142 - AluJb SINE Alu -8 304 18 345 202 167 0 chr4 5190676 5190760 -179097902 + L2 LINE L2 3175 3272 0 2083 117 7 29 chr4 5190850 5191158 -179097504 + AluSx SINE Alu 1 301 -11 27 0 0 0 chr4 5191482 5191509 -179097153 + AT_rich Low_complexity Low_complexity 1 27 0 21 49 0 49 chr4 5192365 5192426 -179096236 + AT_rich Low_complexity Low_complexity 1 58 0 283 198 20 0 chr4 5192431 5192508 -179096154 + FLAM SINE Alu 67 131 -2 2028 98 11 18 chr4 5192885 5193195 -179095467 - AluSx SINE Alu 0 308 1 214 316 42 71 chr4 5193404 5193458 -179095204 + MIR SINE MIR 100 154 -108 778 155 0 0 chr4 5193458 5193574 -179095088 + FLAM_A SINE Alu 1 116 -17 227 29 57 0 chr4 5193577 5193612 -179095050 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 214 316 42 71 chr4 5193612 5193721 -179094941 + MIR SINE MIR 156 262 0 1603 163 21 52 chr4 5193976 5194265 -179094397 + AluJo SINE Alu 10 289 -23 527 285 99 90 chr4 5194418 5194850 -179093812 - L2 LINE L2 -3 3310 2875 1052 248 49 75 chr4 5195046 5195290 -179093372 + L2 LINE L2 1928 2177 -1137 1362 76 167 5 chr4 5195290 5195488 -179093174 + MER30 DNA MER1_type 1 230 0 1052 248 49 75 chr4 5195488 5195543 -179093119 + L2 LINE L2 2177 2232 -1082 611 250 65 6 chr4 5195543 5195711 -179092951 + MER5B DNA MER1_type 1 178 0 1052 248 49 75 chr4 5195711 5195862 -179092800 + L2 LINE L2 2232 2367 -947 440 141 99 0 chr4 5195958 5196029 -179092633 + AluJ/FLAM SINE Alu 5 82 -230 631 295 52 42 chr4 5196029 5196409 -179092253 + L2 LINE L2 2748 3141 -172 725 229 204 10 chr4 5196414 5196615 -179092047 + MIR SINE MIR 21 260 -2 335 303 115 0 chr4 5196634 5196756 -179091906 + L2 LINE L2 3178 3313 0 258 143 41 0 chr4 5197711 5197760 -179090902 - Alu SINE Alu -8 294 244 361 262 111 32 chr4 5198349 5198475 -179090187 + MIR SINE MIR 112 247 -15 663 218 15 0 chr4 5198486 5198619 -179090043 - FLAM_C SINE Alu -7 136 2 690 270 137 5 chr4 5198849 5199053 -179089609 + MIR SINE MIR 32 262 0 204 357 70 49 chr4 5199232 5199375 -179089287 + L2 LINE L2 3167 3312 -1 210 311 175 0 chr4 5199397 5199500 -179089162 - MIR3 SINE MIR 0 208 88 1652 172 11 0 chr4 5199709 5199970 -179088692 - AluJo SINE Alu -20 292 29 1044 118 0 0 chr4 5200124 5200259 -179088403 - AluJb SINE Alu -26 286 152 3235 143 118 33 chr4 5200896 5201533 -179087129 - LTR8 LTR ERV1 0 691 1 248 280 40 0 chr4 5201684 5201759 -179086903 + MLT2F LTR ERVL 54 131 -532 321 289 47 0 chr4 5201953 5202081 -179086581 + MLT2F LTR ERVL 421 554 -109 434 283 5 35 chr4 5202626 5202943 -179085719 + G-rich Low_complexity Low_complexity 1 307 0 225 237 0 0 chr4 5203036 5203095 -179085567 + (TTGGGG)n Simple_repeat Simple_repeat 5 63 0 278 333 69 7 chr4 5213539 5213683 -179074979 + MIR SINE MIR 108 260 -2 30420 110 13 60 chr4 5213774 5215940 -179072722 + L1PA7 LINE L1 9 2276 -3878 2412 75 0 3 chr4 5215940 5216235 -179072427 + AluY SINE Alu 1 294 -17 30420 110 13 60 chr4 5216235 5218230 -179070432 + L1PA7 LINE L1 2276 3746 -2408 2048 119 36 23 chr4 5218230 5218533 -179070129 + AluSc SINE Alu 3 309 0 30420 110 13 60 chr4 5218533 5220834 -179067828 + L1PA7 LINE L1 3746 6154 0 2350 82 0 0 chr4 5220873 5221195 -179067467 + AluSc SINE Alu 1 322 0 1946 68 59 94 chr4 5221537 5221709 -179066953 - AluSp SINE Alu -17 296 138 2202 100 0 3 chr4 5221709 5221999 -179066663 - AluY SINE Alu -22 289 1 1946 68 59 94 chr4 5221999 5222133 -179066529 - AluSp SINE Alu -175 138 1 1411 54 0 0 chr4 5223281 5223447 -179065215 - AluY SINE Alu -12 299 134 2138 137 0 9 chr4 5224210 5224525 -179064137 + AluSx SINE Alu 1 312 0 2000 169 7 0 chr4 5224531 5224839 -179063823 + AluJb SINE Alu 1 310 -2 1879 140 0 33 chr4 5225602 5225909 -179062753 + AluJb SINE Alu 2 298 -14 21 0 0 0 chr4 5230617 5230638 -179058024 + AT_rich Low_complexity Low_complexity 1 21 0 227 288 14 13 chr4 5230994 5231084 -179057578 + GA-rich Low_complexity Low_complexity 1 90 0 1373 284 70 16 chr4 5232650 5233224 -179055438 + L1ME3A LINE L1 5564 6168 -2 442 228 223 45 chr4 5233586 5233788 -179054874 + MLT1E LTR MaLR 1 238 -355 867 248 63 4 chr4 5233797 5234035 -179054627 + MLT1E LTR MaLR 341 592 -1 2333 111 0 13 chr4 5234298 5234613 -179054049 - AluY SINE Alu 0 311 1 2095 109 32 0 chr4 5234616 5234901 -179053761 - AluSx SINE Alu -18 294 1 819 187 0 15 chr4 5235303 5235437 -179053225 + FLAM_C SINE Alu 1 132 -1 763 138 98 0 chr4 5235569 5235692 -179052970 - AluJo SINE Alu -177 135 1 238 311 82 0 chr4 5236418 5236479 -179052183 + L2 LINE L2 3136 3201 -71 1211 176 129 29 chr4 5239539 5239818 -179048844 + AluJo SINE Alu 4 310 -2 35 54 0 0 chr4 5239926 5239982 -179048680 + AT_rich Low_complexity Low_complexity 1 56 0 1897 167 3 3 chr4 5240301 5240600 -179048062 + AluSx SINE Alu 1 299 -13 2173 130 0 0 chr4 5240851 5241144 -179047518 + AluSx SINE Alu 1 293 -19 2513 64 0 0 chr4 5241173 5241470 -179047192 + AluY SINE Alu 1 297 -14 1795 163 23 7 chr4 5242074 5242381 -179046281 - AluJo SINE Alu 0 312 1 662 123 105 0 chr4 5242822 5242936 -179045726 - AluSg/x SINE Alu -1 311 186 391 149 402 0 chr4 5242959 5243046 -179045616 - FLAM_C SINE Alu -7 126 5 2034 148 0 10 chr4 5243728 5244032 -179044630 - AluJb SINE Alu -11 301 1 1699 143 3 44 chr4 5244131 5244468 -179044194 + AluSx SINE Alu 1 325 0 1958 145 10 19 chr4 5244498 5244808 -179043854 - AluJo SINE Alu -1 311 5 307 269 111 0 chr4 5244899 5245007 -179043655 - L2 LINE L2 -4 3309 3190 282 341 22 37 chr4 5245128 5245263 -179043399 - L3 LINE CR1 -22 1555 1423 340 305 130 11 chr4 5245351 5245528 -179043134 - L3 LINE CR1 -175 1402 1205 382 259 111 44 chr4 5245544 5245679 -179042983 + MIR SINE MIR 4 147 -115 2135 116 23 13 chr4 5245890 5246193 -179042469 - AluSx SINE Alu -6 306 1 885 153 0 29 chr4 5246220 5246357 -179042305 - FLAM_C SINE Alu 0 133 1 2244 99 3 7 chr4 5246652 5246955 -179041707 + AluY SINE Alu 1 302 -9 524 297 80 42 chr4 5246955 5247144 -179041518 - L1ME LINE L1 -694 5468 5288 2181 114 17 0 chr4 5247144 5247443 -179041219 - AluSx SINE Alu -8 304 1 524 297 80 42 chr4 5247443 5247523 -179041139 - L1ME LINE L1 -874 5288 5212 2035 131 10 10 chr4 5247523 5247820 -179040842 - AluSx SINE Alu -15 297 1 524 297 80 42 chr4 5247820 5248372 -179040290 - L1ME LINE L1 -950 5212 4615 2044 124 3 7 chr4 5248642 5248959 -179039703 + AluSx SINE Alu 1 316 0 1852 132 0 62 chr4 5248981 5249305 -179039357 + AluSx SINE Alu 1 305 0 388 260 149 22 chr4 5250678 5250859 -179037803 - L2 LINE L2 -1 3312 3109 2592 44 0 3 chr4 5251450 5251747 -179036915 + AluY SINE Alu 1 296 -15 188 323 127 61 chr4 5251864 5252375 -179036287 - L2 LINE L2 -1903 1411 867 741 172 112 0 chr4 5252870 5253004 -179035658 + FAM SINE Alu 1 149 -36 250 218 119 0 chr4 5253157 5253258 -179035404 + L1ME LINE L1 2929 3041 -3105 23 33 0 0 chr4 5253305 5253335 -179035327 + AT_rich Low_complexity Low_complexity 1 30 0 2458 82 0 0 chr4 5253389 5253694 -179034968 + AluY SINE Alu 1 305 -6 671 188 0 8 chr4 5253709 5253837 -179034825 + FRAM SINE Alu 49 175 -1 377 275 25 0 chr4 5253847 5253967 -179034695 + L1ME LINE L1 3850 3972 -2174 * 530 191 143 74 chr4 5253966 5254197 -179034465 + L1MC5 LINE L1 6907 7153 -808 2088 134 3 7 chr4 5254198 5254505 -179034157 + AluSx SINE Alu 1 306 -6 636 251 129 8 chr4 5255558 5255813 -179032849 + L1ME LINE L1 5488 5773 -348 2411 95 0 3 chr4 5255981 5256286 -179032376 + AluSx SINE Alu 1 304 -8 2518 54 3 0 chr4 5256430 5256725 -179031937 + AluY SINE Alu 3 298 -13 21 36 0 0 chr4 5257026 5257054 -179031608 + AT_rich Low_complexity Low_complexity 1 28 0 280 313 0 20 chr4 5257069 5257168 -179031494 - L1ME4a LINE L1 -68 6053 5957 2049 142 0 16 chr4 5257669 5257985 -179030677 - AluJo SINE Alu 0 312 2 1621 159 0 87 chr4 5258042 5258375 -179030287 - AluJo SINE Alu -2 310 7 2254 103 3 3 chr4 5258976 5259319 -179029343 - AluSg SINE Alu 0 343 1 248 109 0 55 chr4 5259319 5259340 -179029322 + (TTTTC)n Simple_repeat Simple_repeat 3 180 0 180 111 0 0 chr4 5259342 5259369 -179029293 + (TCCCC)n Simple_repeat Simple_repeat 4 30 0 1981 94 19 11 chr4 5259369 5259634 -179029028 - AluJo SINE Alu -25 287 21 361 182 0 0 chr4 5259636 5259702 -179028960 + MLT1C LTR MaLR 392 457 -10 565 120 0 33 chr4 5260371 5260463 -179028199 + FLAM_A SINE Alu 45 133 -9 387 138 31 0 chr4 5260503 5260568 -179028094 - AluJb SINE Alu -25 277 211 753 218 0 0 chr4 5260568 5260701 -179027961 + AluJo/FRAM SINE Alu 153 285 -27 275 0 29 0 chr4 5260701 5260736 -179027926 + (TAA)n Simple_repeat Simple_repeat 2 37 0 1744 181 32 0 chr4 5261031 5261313 -179027349 + AluJb SINE Alu 1 291 -21 1361 229 87 33 chr4 5261364 5261799 -179026863 - MLT1C LTR MaLR 0 467 1 757 136 0 32 chr4 5261864 5261989 -179026673 + FLAM_A SINE Alu 2 122 -11 1974 138 20 3 chr4 5262042 5262338 -179026324 + AluJb SINE Alu 1 301 -11 2232 99 7 30 chr4 5262340 5262475 -179026187 + AluSq SINE Alu 2 139 -174 2405 61 0 51 chr4 5262475 5262786 -179025876 + AluY SINE Alu 1 295 -16 2232 99 7 30 chr4 5262786 5262953 -179025709 + AluSq SINE Alu 139 297 -16 3378 49 30 5 chr4 5269600 5270031 -179018631 - MLT2A1 LTR ERVL 0 444 3 17762 76 19 24 chr4 5270033 5270203 -179018459 - ERVL-A1 LTR ERVL 0 5654 5485 2132 100 13 17 chr4 5270203 5270504 -179018158 - AluSq SINE Alu -13 300 1 17762 76 19 24 chr4 5270504 5270959 -179017703 - ERVL-A1 LTR ERVL -169 5485 5029 2474 64 0 10 chr4 5270959 5271257 -179017405 - AluY SINE Alu -16 295 1 17762 76 19 24 chr4 5271257 5273466 -179015196 - ERVL-A1 LTR ERVL -625 5029 2911 1430 65 0 6 chr4 5273567 5273736 -179014926 - AluY SINE Alu -143 168 1 4277 177 45 37 chr4 5273736 5273752 -179014910 + L1MB3 LINE L1 4677 4691 -1492 262 0 26 26 chr4 5273752 5273791 -179014871 + (CAAAA)n Simple_repeat Simple_repeat 5 43 0 4277 177 45 37 chr4 5273791 5274241 -179014421 + L1MB3 LINE L1 4691 5136 -1047 2524 61 3 0 chr4 5274241 5274534 -179014128 - AluY SINE Alu -17 294 1 4277 177 45 37 chr4 5274534 5275565 -179013097 + L1MB3 LINE L1 5136 6178 -5 1953 253 20 23 chr4 5275574 5276172 -179012490 + L1M4 LINE L1 2272 2867 -3279 782 168 30 15 chr4 5276346 5276477 -179012185 - FLAM_C SINE Alu 0 133 1 281 285 84 28 chr4 5279485 5279664 -179008998 + L1M4b LINE L1 11 199 -6660 1084 266 96 40 chr4 5280136 5280435 -179008227 + L1M4b LINE L1 1263 1544 -5311 2016 147 0 23 chr4 5280435 5280735 -179007927 + AluJb SINE Alu 1 293 -19 1084 266 96 40 chr4 5280735 5281263 -179007399 + L1M4b LINE L1 1544 1987 -4868 506 189 25 33 chr4 5281303 5281425 -179007237 + MER67B LTR ERV1 78 198 -463 540 202 62 0 chr4 5281426 5281555 -179007107 + L1MC1 LINE L1 6183 6319 -14 2015 115 31 0 chr4 5281563 5281850 -179006812 - AluSx SINE Alu -6 306 11 271 227 193 20 chr4 5281863 5282013 -179006649 + L1M4b LINE L1 2361 2536 -4602 2138 153 0 3 chr4 5282052 5282365 -179006297 + AluSx SINE Alu 1 312 0 270 176 0 0 chr4 5282376 5282427 -179006235 + GA-rich Low_complexity Low_complexity 2 52 0 279 283 65 30 chr4 5282455 5282685 -179005977 + L1M4b LINE L1 2558 2795 -4343 2292 108 10 0 chr4 5282685 5282982 -179005680 + AluSx SINE Alu 1 300 -12 1540 196 0 4 chr4 5283014 5283285 -179005377 + AluJo SINE Alu 24 293 -19 226 182 18 0 chr4 5283343 5283398 -179005264 + L1M4b LINE L1 2781 2836 -4302 881 252 134 9 chr4 5283443 5283832 -179004830 + L1M4b LINE L1 3009 3415 -3542 534 191 24 15 chr4 5283832 5283944 -179004718 + MLT1A1 LTR MaLR 1 93 -272 541 266 12 0 chr4 5283988 5284157 -179004505 + L1M4b LINE L1 3415 3585 -3372 * 2785 249 85 32 chr4 5284132 5285220 -179003442 + L1M4b LINE L1 3837 4981 -1976 990 85 0 0 chr4 5285220 5285350 -179003312 + AluY SINE Alu 171 300 -11 1588 172 21 81 chr4 5285369 5285701 -179002961 + AluJo SINE Alu 1 312 0 1761 202 82 140 chr4 5285707 5286333 -179002329 + L1M4b LINE L1 4957 5499 -1458 2447 78 10 3 chr4 5286333 5286641 -179002021 + AluSg SINE Alu 1 310 0 1761 202 82 140 chr4 5286641 5287068 -179001594 + L1M4b LINE L1 5499 5949 -1008 2201 116 0 0 chr4 5287201 5287512 -179001150 - AluSx SINE Alu 0 311 1 2428 92 0 0 chr4 5288989 5289295 -178999367 - AluY SINE Alu -5 306 1 228 222 0 63 chr4 5289712 5289775 -178998887 - MIR SINE MIR -65 143 85 2317 99 0 0 chr4 5292145 5292448 -178996214 + AluSx SINE Alu 1 303 -9 311 302 102 34 chr4 5292901 5293106 -178995556 + MIR SINE MIR 44 262 0 187 361 118 14 chr4 5293683 5293827 -178994835 - L2 LINE L2 -19 3253 3095 2182 114 0 3 chr4 5294010 5294308 -178994354 - AluSx SINE Alu -12 300 4 307 231 0 13 chr4 5294437 5294515 -178994147 + Charlie8 DNA MER1_type 92 168 -2249 409 271 118 76 chr4 5294971 5295110 -178993552 + L1MC4 LINE L1 3589 3721 -2425 1470 186 3 68 chr4 5295110 5295258 -178993404 + AluJo SINE Alu 1 120 -192 1793 162 10 10 chr4 5295258 5295548 -178993114 - AluJo SINE Alu -22 290 1 1470 186 3 68 chr4 5295548 5295710 -178992952 + AluJo SINE Alu 120 291 -21 409 271 118 76 chr4 5295710 5295730 -178992932 + L1MC4 LINE L1 3721 3739 -2407 282 95 0 0 chr4 5295730 5295772 -178992890 + (CA)n Simple_repeat Simple_repeat 2 43 0 409 271 118 76 chr4 5295772 5296269 -178992393 + L1MC4 LINE L1 3739 4274 -1872 284 229 123 0 chr4 5296401 5296523 -178992139 + L1MC4 LINE L1 4429 4565 -1581 1062 150 40 93 chr4 5296752 5296978 -178991684 + AluSg/x SINE Alu 85 298 -14 424 196 29 20 chr4 5297210 5297312 -178991350 + MLT1C LTR MaLR 323 425 -42 2383 96 0 0 chr4 5297459 5297762 -178990900 + AluSc SINE Alu 1 303 -6 2356 116 138 5 chr4 5298449 5298827 -178989835 + MSTA LTR MaLR 1 428 0 1810 138 70 54 chr4 5299518 5299845 -178988817 + THE1C LTR MaLR 1 336 -39 2271 111 7 0 chr4 5299845 5300151 -178988511 - AluSp SINE Alu -5 308 1 1810 138 70 54 chr4 5300151 5300192 -178988470 + THE1C LTR MaLR 336 375 0 2469 113 0 6 chr4 5300910 5301264 -178987398 - MER1A DNA MER1_type 0 529 178 358 314 69 39 chr4 5301278 5301482 -178987180 + L1MC4 LINE L1 5023 5232 -914 1387 227 54 116 chr4 5301503 5301533 -178987129 + L1MC4 LINE L1 5254 5284 -2524 2383 88 3 0 chr4 5301533 5301829 -178986833 + AluY SINE Alu 1 297 -14 1387 227 54 116 chr4 5301829 5302158 -178986504 + L1MC4 LINE L1 5284 5632 -2176 1998 169 3 0 chr4 5302158 5302459 -178986203 - AluSx SINE Alu -10 302 1 2252 102 10 0 chr4 5302463 5302758 -178985904 - AluSc SINE Alu -11 298 1 1972 136 0 27 chr4 5302766 5303060 -178985602 - AluJo SINE Alu -24 288 3 1387 227 54 116 chr4 5303060 5303199 -178985463 + L1MC4 LINE L1 5642 5788 -2020 2211 145 0 0 chr4 5303199 5303502 -178985160 + AluSx SINE Alu 3 305 -7 1387 227 54 116 chr4 5303502 5303727 -178984935 + L1MC4 LINE L1 5788 5947 -1861 3663 249 100 36 chr4 5303867 5304672 -178983990 + L1MC4 LINE L1 6298 7050 -992 2292 92 17 0 chr4 5304672 5304965 -178983697 + AluSp SINE Alu 1 298 -15 3663 249 100 36 chr4 5304965 5305724 -178982938 + L1MC4 LINE L1 7050 7962 -80 2039 110 14 21 chr4 5305775 5306065 -178982597 - AluSx SINE Alu -24 288 1 222 91 0 0 chr4 5306954 5306987 -178981675 + (TCC)n Simple_repeat Simple_repeat 1 33 0 1151 173 0 0 chr4 5307614 5307793 -178980869 + AluJb SINE Alu 66 244 -68 1136 143 11 17 chr4 5309378 5309553 -178979109 - AluSg/x SINE Alu -16 294 121 21 36 0 0 chr4 5310412 5310440 -178978222 + AT_rich Low_complexity Low_complexity 1 28 0 1344 161 173 4 chr4 5310689 5310959 -178977703 - AluJo SINE Alu 0 311 1 2358 111 3 0 chr4 5312179 5312485 -178976177 + AluSg SINE Alu 1 307 -3 238 281 133 38 chr4 5313192 5313402 -178975260 - L1MC4 LINE L1 -2 8040 7811 1763 105 124 15 chr4 5313428 5313695 -178974967 + AluSg SINE Alu 1 296 -14 778 184 0 0 chr4 5313700 5313825 -178974837 - FLAM_C SINE Alu -18 125 1 250 281 0 16 chr4 5313838 5313902 -178974760 + CT-rich Low_complexity Low_complexity 2 64 0 365 320 178 33 chr4 5313953 5314284 -178974378 - L1MC4 LINE L1 -360 7682 7304 2102 125 68 3 chr4 5314298 5314650 -178974012 + THE1C LTR MaLR 1 375 0 280 316 81 48 chr4 5314667 5314952 -178973710 - L1MC4 LINE L1 -733 7309 7008 803 132 99 0 chr4 5314952 5315073 -178973589 - FLAM_C SINE Alu 0 133 1 280 316 81 48 chr4 5315073 5315144 -178973518 - L1MC4 LINE L1 -1034 7008 6941 1348 168 0 17 chr4 5315310 5315542 -178973120 + AluSq SINE Alu 85 312 -1 753 200 61 22 chr4 5316196 5316376 -178972286 - MIR SINE MIR -2 260 74 405 280 10 0 chr4 5318031 5318131 -178970531 + L2 LINE L2 2657 2757 -557 215 313 57 47 chr4 5318165 5318376 -178970286 + L2 LINE L2 2844 3056 -216 261 309 186 5 chr4 5318921 5319125 -178969537 - L2 LINE L2 -541 2773 2533 668 228 217 11 chr4 5319242 5319431 -178969231 + MIR SINE MIR 28 255 -7 440 302 83 16 chr4 5320213 5320405 -178968257 + L2 LINE L2 3100 3304 -9 370 282 156 26 chr4 5322094 5322555 -178966107 + L1MEd LINE L1 597 1117 -5002 2117 235 88 64 chr4 5322605 5323149 -178965513 + L1MCa LINE L1 888 1417 -5190 2216 117 7 0 chr4 5323149 5323457 -178965205 + AluSx SINE Alu 1 310 -2 2117 235 88 64 chr4 5323457 5324281 -178964381 + L1MCa LINE L1 1417 2219 -4388 795 206 0 0 chr4 5324281 5324412 -178964250 + FLAM_A SINE Alu 3 133 0 2117 235 88 64 chr4 5324412 5324468 -178964194 + L1MCa LINE L1 2219 2272 -4335 2479 83 0 0 chr4 5324468 5324769 -178963893 + AluY SINE Alu 11 311 0 2117 235 88 64 chr4 5324769 5324800 -178963862 + L1MCa LINE L1 2272 2609 -3998 1026 218 43 70 chr4 5324798 5324983 -178963679 + L1MCa LINE L1 3161 3350 -3076 * 1653 146 16 59 chr4 5324983 5325304 -178963358 + AluJb SINE Alu 6 312 0 1026 218 43 70 chr4 5325304 5325587 -178963075 + L1MCa LINE L1 3350 3616 -2810 966 161 11 33 chr4 5325588 5325768 -178962894 + FRAM SINE Alu 1 176 0 2289 106 0 0 chr4 5325800 5326092 -178962570 + AluSx SINE Alu 1 292 -20 1666 170 3 55 chr4 5326105 5326417 -178962245 + AluJo SINE Alu 1 296 -16 7245 189 48 43 chr4 5326418 5326581 -178962081 + L1MB3 LINE L1 3629 3790 -2673 2275 117 0 3 chr4 5326581 5326880 -178961782 + AluSx SINE Alu 1 298 -14 7245 189 48 43 chr4 5326880 5327063 -178961599 + L1MB3 LINE L1 3790 3971 -2492 2370 85 16 0 chr4 5327063 5327370 -178961292 + AluSp SINE Alu 1 312 -1 7245 189 48 43 chr4 5327370 5328079 -178960583 + L1MB3 LINE L1 3971 4675 -1788 2458 89 0 0 chr4 5328079 5328381 -178960281 + AluSx SINE Alu 1 302 -10 7245 189 48 43 chr4 5328381 5328458 -178960204 + L1MB3 LINE L1 4675 4750 -1713 1829 120 45 42 chr4 5328458 5328724 -178959938 + AluY SINE Alu 1 270 -41 201 39 0 0 chr4 5328724 5328750 -178959912 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 1829 120 45 42 chr4 5328750 5328792 -178959870 + AluY SINE Alu 270 310 -1 7245 189 48 43 chr4 5328792 5328983 -178959679 + L1MB3 LINE L1 4750 4939 -1524 2401 77 0 7 chr4 5328983 5329283 -178959379 - AluY SINE Alu -13 298 1 7245 189 48 43 chr4 5329283 5329299 -178959363 + L1MB3 LINE L1 4939 4953 -1510 262 0 26 26 chr4 5329299 5329338 -178959324 + (CAAAA)n Simple_repeat Simple_repeat 5 43 0 7245 189 48 43 chr4 5329338 5329788 -178958874 + L1MB3 LINE L1 4953 5399 -1064 2524 61 3 0 chr4 5329788 5330081 -178958581 - AluY SINE Alu -17 294 1 7245 189 48 43 chr4 5330081 5331112 -178957550 + L1MB3 LINE L1 5399 6458 -5 1953 253 20 23 chr4 5331121 5331719 -178956943 + L1M4 LINE L1 2272 2867 -3279 751 191 32 0 chr4 5331889 5332015 -178956647 - FLAM_C SINE Alu -12 131 2 355 280 5 87 chr4 5332867 5333005 -178955657 + L1M4 LINE L1 4476 4593 -1553 2009 115 0 21 chr4 5333005 5333292 -178955370 - AluSx SINE Alu -18 294 14 355 280 5 87 chr4 5333292 5333360 -178955302 + L1M4 LINE L1 4593 4665 -1481 2408 103 3 0 chr4 5333548 5333860 -178954802 + AluSp SINE Alu 1 313 0 1738 183 13 13 chr4 5333911 5334212 -178954450 - AluJo SINE Alu -3 309 9 1894 150 6 29 chr4 5334256 5334569 -178954093 + AluJo SINE Alu 1 306 -6 228 257 14 0 chr4 5334570 5334640 -178954022 + L1M4 LINE L1 4914 4984 -1162 3378 49 30 5 chr4 5335780 5336211 -178952451 - MLT2A1 LTR ERVL 0 444 3 17749 77 19 24 chr4 5336213 5336383 -178952279 - ERVL-A1 LTR ERVL 0 5654 5485 2132 100 13 17 chr4 5336383 5336684 -178951978 - AluSq SINE Alu -13 300 1 17749 77 19 24 chr4 5336684 5337139 -178951523 - ERVL-A1 LTR ERVL -169 5485 5029 2386 71 3 10 chr4 5337139 5337436 -178951226 - AluY SINE Alu -16 295 1 17749 77 19 24 chr4 5337436 5339684 -178948978 - ERVL-A1 LTR ERVL -625 5029 2875 2323 82 0 26 chr4 5339690 5339995 -178948667 - AluY SINE Alu -14 297 1 1936 100 8 0 chr4 5339999 5340249 -178948413 - AluSg SINE Alu -15 295 44 2860 208 53 20 chr4 5340250 5340984 -178947678 - L1MDb LINE L1 -2001 4956 4199 1473 217 8 42 chr4 5340984 5341346 -178947316 + MLT1A1 LTR MaLR 1 365 0 795 227 146 18 chr4 5341346 5341681 -178946981 - L1MDb LINE L1 -2754 4203 3826 751 245 58 0 chr4 5341680 5341921 -178946741 - L1MDb LINE L1 -4899 1956 1702 * 2030 139 0 0 chr4 5341936 5342217 -178946445 + AluSx SINE Alu 1 281 -31 255 204 0 0 chr4 5342226 5342280 -178946382 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 322 163 23 58 chr4 5342288 5342374 -178946288 - L1MDb LINE L1 -5210 1750 1668 1526 235 163 10 chr4 5342399 5342913 -178945749 - L1MDb LINE L1 -5635 1224 632 1142 181 70 31 chr4 5342979 5343206 -178945456 + MER46A DNA MER2_type 1 236 0 226 303 59 0 chr4 5344294 5344413 -178944249 + L2 LINE L2 2473 2598 -716 232 148 49 49 chr4 5345755 5345816 -178942846 + LTR56 LTR ERV1 1 61 -384 781 138 0 0 chr4 5345816 5345925 -178942737 + AluJb SINE Alu 2 110 -202 959 141 20 0 chr4 5345925 5346074 -178942588 - AluYa8 SINE Alu -20 290 139 2383 109 3 0 chr4 5346076 5346387 -178942275 - AluSq SINE Alu -1 312 1 1246 136 23 0 chr4 5346399 5346576 -178942086 - AluSg/x SINE Alu -16 296 116 2333 95 0 0 chr4 5346597 5346893 -178941769 - AluY SINE Alu -15 296 1 326 302 93 14 chr4 5346925 5347064 -178941598 - LTR49-int LTR ERV1 -4654 1677 1528 1627 169 17 24 chr4 5347094 5347390 -178941272 + AluJb SINE Alu 1 294 -18 1772 154 3 32 chr4 5347398 5347621 -178941041 + AluJb SINE Alu 9 222 -90 3992 181 56 1 chr4 5347621 5348317 -178940345 - MER50 LTR ERV1 0 734 1 1772 154 3 32 chr4 5348317 5348405 -178940257 + AluJb SINE Alu 222 311 -1 551 183 125 17 chr4 5348934 5349054 -178939608 + FLAM_C SINE Alu 1 133 0 2119 88 51 17 chr4 5349069 5349364 -178939298 + AluSp SINE Alu 1 305 -8 240 108 54 0 chr4 5349377 5349414 -178939248 + FLAM_C SINE Alu 132 170 0 352 271 122 0 chr4 5349562 5349669 -178938993 - MER34B LTR ERV1 -441 124 5 2393 72 7 0 chr4 5350036 5350326 -178938336 - AluSc SINE Alu -17 292 1 1974 121 3 65 chr4 5350334 5350657 -178938005 - AluSq SINE Alu -10 303 1 610 219 38 104 chr4 5350909 5350967 -178937695 - LTR56 LTR ERV1 -120 325 265 1612 169 6 60 chr4 5350967 5351107 -178937555 + AluJb SINE Alu 1 147 -165 2489 70 3 6 chr4 5351107 5351419 -178937243 + AluY SINE Alu 1 311 0 1612 169 6 60 chr4 5351419 5351592 -178937070 + AluJb SINE Alu 147 297 -15 610 219 38 104 chr4 5351592 5351820 -178936842 - LTR56 LTR ERV1 -180 265 58 1425 134 13 22 chr4 5351829 5352053 -178936609 - AluJo SINE Alu -3 309 88 207 162 0 0 chr4 5352060 5352097 -178936565 + (TA)n Simple_repeat Simple_repeat 1 37 0 22 0 0 0 chr4 5352098 5352120 -178936542 + AT_rich Low_complexity Low_complexity 1 22 0 2117 121 0 29 chr4 5352127 5352442 -178936220 + AluSq SINE Alu 1 306 -7 837 178 40 7 chr4 5352591 5352743 -178935919 - FRAM SINE Alu -25 151 1 501 235 11 74 chr4 5352758 5353043 -178935619 + LTR49-int LTR ERV1 2707 2973 -1907 987 155 123 40 chr4 5353061 5353338 -178935324 + LTR49-int LTR ERV1 4168 4467 -3653 896 171 57 0 chr4 5353347 5353505 -178935157 + AluJb SINE Alu 144 310 -2 862 103 58 17 chr4 5353539 5353713 -178934949 + LTR49-int LTR ERV1 4007 4187 -2144 2228 97 10 3 chr4 5353714 5354004 -178934658 - AluSg1 SINE Alu -17 292 1 2332 82 0 3 chr4 5354016 5354309 -178934353 - AluY SINE Alu -19 292 1 575 220 55 0 chr4 5354346 5354455 -178934207 + AluJb SINE Alu 3 117 -195 312 285 73 61 chr4 5355252 5355417 -178933245 - L1ME3 LINE L1 -192 5970 5804 316 306 20 41 chr4 5355507 5355654 -178933008 - L1ME3 LINE L1 -533 5629 5497 1590 181 26 36 chr4 5355796 5355959 -178932703 - AluJo SINE Alu -11 301 141 2706 49 0 0 chr4 5355959 5356265 -178932397 - AluY SINE Alu -5 306 1 1590 181 26 36 chr4 5356265 5356405 -178932257 - AluJo SINE Alu -171 141 1 285 323 62 13 chr4 5356406 5356632 -178932030 - L1ME3 LINE L1 -1588 4558 4322 1873 169 10 0 chr4 5356632 5356922 -178931740 - AluJo SINE Alu -15 297 5 1679 161 3 25 chr4 5357201 5357487 -178931175 + AluJb SINE Alu 1 280 -32 303 93 0 0 chr4 5357490 5357533 -178931129 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 2315 85 20 0 chr4 5357537 5357832 -178930830 - AluSp SINE Alu -12 301 1 337 243 57 64 chr4 5357838 5357978 -178930684 - L1ME3 LINE L1 -2298 3848 3710 862 123 0 0 chr4 5357980 5358094 -178930568 - AluSp/q SINE Alu -25 288 175 238 296 116 73 chr4 5358097 5358536 -178930126 - L1ME3 LINE L1 -2397 3749 3292 1750 151 28 14 chr4 5358564 5358849 -178929813 - AluJb SINE Alu -21 291 3 756 261 91 67 chr4 5358858 5359312 -178929350 - L1MC5 LINE L1 -30 7931 2938 1410 90 0 6 chr4 5359343 5359520 -178929142 + AluSq SINE Alu 3 178 -135 2213 133 8 41 chr4 5359523 5359985 -178928677 - AluSx SINE Alu -10 302 1 1888 161 14 0 chr4 5360032 5360318 -178928344 + AluSx SINE Alu 17 306 -6 2170 123 3 0 chr4 5360320 5360620 -178928042 + AluSx SINE Alu 1 301 -11 331 253 234 7 chr4 5360745 5360899 -178927763 - MER5A DNA MER1_type 0 189 1 1800 163 50 0 chr4 5361833 5362115 -178926547 - AluJb SINE Alu -16 296 1 2410 78 0 3 chr4 5363875 5364169 -178924493 - AluSc SINE Alu -14 295 3 2372 99 0 7 chr4 5364173 5364475 -178924187 - AluSx SINE Alu -12 300 1 22 0 0 0 chr4 5364479 5364501 -178924161 + AT_rich Low_complexity Low_complexity 1 22 0 260 222 0 16 chr4 5365033 5365096 -178923566 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 727 291 86 79 chr4 5365131 5365356 -178923306 + L1M4 LINE L1 2676 2898 -3248 1920 121 81 0 chr4 5365356 5365629 -178923033 - AluSx SINE Alu -17 295 1 727 291 86 79 chr4 5365629 5365656 -178923006 + L1M4 LINE L1 2898 2923 -3223 2335 97 0 0 chr4 5365656 5365978 -178922684 + AluSx SINE Alu 1 312 0 727 291 86 79 chr4 5365978 5366144 -178922518 + L1M4 LINE L1 2923 3086 -3060 2594 59 0 3 chr4 5366144 5366449 -178922213 + AluY SINE Alu 1 304 -7 727 291 86 79 chr4 5366449 5366492 -178922170 + L1M4 LINE L1 3086 3127 -3019 1787 183 0 13 chr4 5366492 5366804 -178921858 + AluJb SINE Alu 1 308 -4 727 291 86 79 chr4 5366804 5366824 -178921838 + L1M4 LINE L1 3127 3145 -3001 2414 97 0 0 chr4 5366824 5367134 -178921528 + AluSg SINE Alu 1 310 0 727 291 86 79 chr4 5367134 5367565 -178921097 + L1M4 LINE L1 3145 3572 -2574 2103 89 14 11 chr4 5367565 5367871 -178920791 - AluSg SINE Alu 0 307 1 727 291 86 79 chr4 5367871 5368533 -178920129 + L1M4 LINE L1 3572 4228 -1918 2235 114 0 9 chr4 5368533 5368849 -178919813 + AluSq SINE Alu 1 313 0 727 291 86 79 chr4 5368849 5368872 -178919790 + L1M4 LINE L1 4228 4249 -1897 2012 138 3 0 chr4 5368872 5369178 -178919484 + AluSq SINE Alu 1 307 0 727 291 86 79 chr4 5369178 5369218 -178919444 + L1M4 LINE L1 4249 4287 -1859 1349 142 47 91 chr4 5369218 5369247 -178919415 - MER33 DNA MER1_type -2261 324 295 2043 111 0 108 chr4 5369247 5369591 -178919071 + AluSx SINE Alu 1 307 -5 1349 142 47 91 chr4 5369591 5369900 -178918762 - MER33 DNA MER1_type -2290 295 1 727 291 86 79 chr4 5369900 5370159 -178918503 + L1M4 LINE L1 4287 4599 -1547 2000 118 0 21 chr4 5370159 5370446 -178918216 - AluSx SINE Alu -18 294 14 727 291 86 79 chr4 5370446 5370514 -178918148 + L1M4 LINE L1 4599 4665 -1481 2443 74 3 6 chr4 5370702 5371014 -178917648 + AluY SINE Alu 1 311 0 517 174 0 0 chr4 5371015 5371101 -178917561 + AluJb SINE Alu 127 212 -100 3239 194 60 12 chr4 5372242 5372902 -178915760 + L1M4 LINE L1 3573 4276 -1870 2166 82 53 4 chr4 5372902 5373183 -178915479 + AluSq SINE Alu 1 295 -18 3239 194 60 12 chr4 5373183 5373285 -178915377 + L1M4 LINE L1 4276 4372 -1774 184 274 24 113 chr4 5373286 5373410 -178915252 + L2 LINE L2 3015 3127 -145 210 71 0 0 chr4 5374714 5374742 -178913920 + (TG)n Simple_repeat Simple_repeat 1 28 0 357 356 0 6 chr4 5375395 5375572 -178913090 + (CA)n Simple_repeat Simple_repeat 1 176 0 226 179 0 0 chr4 5375900 5375939 -178912723 - MIR SINE MIR -157 105 67 22 35 0 0 chr4 5376891 5376920 -178911742 + AT_rich Low_complexity Low_complexity 1 29 0 1368 172 18 0 chr4 5427198 5427425 -178861237 - MER1A DNA MER1_type -296 231 1 1884 174 10 0 chr4 5427504 5427798 -178860864 - AluJo SINE Alu -15 297 1 1976 157 0 3 chr4 5427798 5428097 -178860565 - AluJo SINE Alu -13 299 1 184 233 0 100 chr4 5428793 5428853 -178859809 + MIR3 SINE MIR 143 196 -12 340 156 0 47 chr4 5429000 5429064 -178859598 + AluJ/FLAM SINE Alu 1 61 -241 2354 84 3 3 chr4 5429743 5430041 -178858621 + AluSp SINE Alu 1 298 -15 2333 108 0 7 chr4 5430716 5431023 -178857639 + AluSx SINE Alu 1 305 -7 248 180 49 0 chr4 5431128 5431189 -178857473 + A-rich Low_complexity Low_complexity 3 66 0 2350 112 0 0 chr4 5431356 5431668 -178856994 + AluSx SINE Alu 1 312 0 216 0 0 0 chr4 5432120 5432144 -178856518 + (CA)n Simple_repeat Simple_repeat 1 24 0 308 316 71 26 chr4 5433388 5433543 -178855119 + L1MC5 LINE L1 7327 7488 -473 745 175 60 22 chr4 5433599 5433782 -178854880 + L1MB4 LINE L1 5991 6180 0 321 161 0 0 chr4 5433785 5433841 -178854821 + L1MB8 LINE L1 6093 6148 -30 1684 58 0 19 chr4 5434240 5434448 -178854214 + AluY SINE Alu 96 299 -12 2295 77 3 39 chr4 5434858 5435169 -178853493 - AluY SINE Alu -11 300 1 805 235 11 0 chr4 5435170 5435349 -178853313 - AluJo SINE Alu -124 188 8 2272 113 0 3 chr4 5435493 5435802 -178852860 - AluSx SINE Alu 0 312 5 217 232 146 66 chr4 5438632 5438783 -178849879 - MIR SINE MIR -19 243 81 26 50 0 0 chr4 5439100 5439140 -178849522 + AT_rich Low_complexity Low_complexity 1 40 0 2102 125 0 0 chr4 5439159 5439438 -178849224 - AluJb SINE Alu -29 283 5 2097 182 73 137 chr4 5439668 5440124 -178848538 + Charlie1 DNA MER1_type 1872 2356 -405 1911 123 0 53 chr4 5440124 5440442 -178848220 + AluSc SINE Alu 1 301 -8 2097 182 73 137 chr4 5440442 5440649 -178848013 + Charlie1 DNA MER1_type 2356 2458 -303 2068 89 0 19 chr4 5440649 5440920 -178847742 + AluSq SINE Alu 1 266 -47 2097 182 73 137 chr4 5440920 5441206 -178847456 + Charlie1 DNA MER1_type 2458 2761 0 420 320 33 62 chr4 5441361 5441605 -178847057 + L1MC4 LINE L1 7758 7994 -48 321 347 67 21 chr4 5441675 5441868 -178846794 - L1MEd LINE L1 -4907 1477 1302 307 305 125 38 chr4 5441948 5442315 -178846347 - L1MEd LINE L1 -5288 1084 686 247 287 54 30 chr4 5442483 5442578 -178846084 - L1MEd LINE L1 -5924 448 346 2328 90 0 3 chr4 5442578 5442877 -178845785 - AluSq SINE Alu -15 298 1 247 287 54 30 chr4 5442877 5442948 -178845714 - L1MEd LINE L1 -6026 346 278 2472 86 0 3 chr4 5443058 5443371 -178845291 - AluSx SINE Alu 0 312 1 1436 169 97 29 chr4 5443923 5444201 -178844461 - AluJb SINE Alu -13 299 3 923 126 0 38 chr4 5444321 5444480 -178844182 + MSTC LTR MaLR 225 377 -51 213 242 106 0 chr4 5445674 5445740 -178842922 - MIR SINE MIR -79 183 111 331 284 199 0 chr4 5445751 5445952 -178842710 - MIR SINE MIR 0 262 22 2538 64 0 3 chr4 5446338 5446636 -178842026 - AluY SINE Alu -14 297 1 304 247 0 14 chr4 5447252 5447325 -178841337 + L1ME4a LINE L1 6043 6114 -7 2147 66 92 0 chr4 5447359 5447632 -178841030 + AluY SINE Alu 1 298 -13 1643 159 78 3 chr4 5447833 5448116 -178840546 - AluJo SINE Alu -8 304 1 2173 106 3 39 chr4 5448302 5448443 -178840219 + AluSg SINE Alu 1 145 -165 2486 74 0 0 chr4 5448443 5448740 -178839922 + AluY SINE Alu 1 297 -14 2173 106 3 39 chr4 5448740 5448909 -178839753 + AluSg SINE Alu 145 300 -10 2014 132 35 0 chr4 5449037 5449325 -178839337 + AluSg SINE Alu 2 299 -11 194 307 120 7 chr4 5449490 5449640 -178839022 + MIR SINE MIR 96 262 0 2022 145 10 0 chr4 5450460 5450764 -178837898 + AluJb SINE Alu 1 307 -5 1354 163 106 12 chr4 5451350 5451595 -178837067 + AluJb SINE Alu 1 268 -44 779 179 8 0 chr4 5451641 5451764 -178836898 + FLAM_C SINE Alu 1 124 -9 37 23 0 0 chr4 5451764 5451808 -178836854 + AT_rich Low_complexity Low_complexity 1 44 0 1750 108 123 4 chr4 5452037 5452306 -178836356 + AluSx SINE Alu 1 301 -1 2401 62 3 7 chr4 5453012 5453302 -178835360 + AluSc SINE Alu 1 289 -20 1648 215 19 25 chr4 5453560 5453927 -178834735 + MLT1A1 LTR MaLR 1 365 0 2147 131 0 7 chr4 5454198 5454503 -178834159 - AluJb SINE Alu -3 309 7 376 310 120 37 chr4 5454690 5454990 -178833672 + L2 LINE L2 2478 2802 -512 517 245 38 43 chr4 5455142 5455326 -178833336 + LTR41 LTR ERVL 1 183 -590 1927 102 51 17 chr4 5455623 5455917 -178832745 - AluSq SINE Alu -9 304 1 326 311 58 39 chr4 5455986 5456192 -178832470 + L2 LINE L2 3084 3293 -20 344 212 106 15 chr4 5456357 5456489 -178832173 + L1MEc LINE L1 744 887 -5509 1899 156 3 19 chr4 5456493 5456808 -178831854 + AluSx SINE Alu 1 310 -2 1685 83 0 200 chr4 5456817 5457192 -178831470 + AluSx SINE Alu 3 302 0 2237 91 13 7 chr4 5457201 5457499 -178831163 + AluSp SINE Alu 1 300 -13 469 207 112 73 chr4 5457499 5457671 -178830991 + L1M4 LINE L1 4247 4428 -1718 754 187 8 0 chr4 5457673 5457796 -178830866 - FLAM_C SINE Alu -16 127 4 2351 191 43 41 chr4 5457843 5458434 -178830228 + L1M4 LINE L1 4460 5054 -1092 2264 107 10 0 chr4 5458434 5458733 -178829929 - AluSg SINE Alu -8 302 1 2351 191 43 41 chr4 5458733 5458796 -178829866 + L1M4 LINE L1 5054 5115 -1031 2466 67 0 0 chr4 5458819 5459116 -178829546 + AluY SINE Alu 1 297 -14 270 284 15 0 chr4 5659695 5659762 -178628900 + MER112 DNA MER1_type 18 85 -175 1502 128 54 0 chr4 5659847 5660089 -178628573 - AluJo SINE Alu -57 255 1 2010 127 0 13 chr4 5660099 5660414 -178628248 - AluSx SINE Alu -1 311 1 1976 123 3 13 chr4 5660426 5660742 -178627920 - AluSq SINE Alu 0 313 1 180 333 78 31 chr4 5661705 5661834 -178626828 + MIR3 SINE MIR 11 145 -63 468 125 14 0 chr4 5662689 5662761 -178625901 - AluS SINE Alu -238 74 2 1926 255 30 11 chr4 5662761 5663757 -178624905 - L1MB3 LINE L1 -351 5832 4818 1940 113 3 3 chr4 5663802 5664103 -178624559 + AluSp SINE Alu 1 301 -12 1102 216 2 121 chr4 5664173 5664380 -178624282 - L1MA4 LINE L1 -170 6130 5900 1482 179 0 4 chr4 5664380 5664660 -178624002 - AluSx SINE Alu -32 280 2 1102 216 2 121 chr4 5664660 5664702 -178623960 - L1MA4 LINE L1 -400 5900 5855 2633 20 0 0 chr4 5664702 5665003 -178623659 + AluY SINE Alu 11 311 0 1102 216 2 121 chr4 5665003 5665165 -178623497 - L1MA4 LINE L1 -445 5855 5767 1973 124 0 31 chr4 5665351 5665674 -178622988 + AluSp SINE Alu 1 313 0 380 228 74 74 chr4 5665817 5665966 -178622696 + MER5B DNA MER1_type 25 173 -5 697 228 46 0 chr4 5666069 5666266 -178622396 - MER6B DNA MER2_type 0 210 5 2224 108 0 6 chr4 5668700 5669015 -178619647 - AluSq SINE Alu 0 313 1 594 233 29 86 chr4 5669082 5669172 -178619490 + L1MEd LINE L1 23 117 -6002 2027 105 11 0 chr4 5669172 5669458 -178619204 + AluSq SINE Alu 1 289 -24 243 0 0 0 chr4 5669463 5669490 -178619172 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 594 233 29 86 chr4 5669490 5669603 -178619059 + L1MEd LINE L1 121 220 -5899 1102 267 58 47 chr4 5669664 5669901 -178618761 + L1MEd LINE L1 329 575 -5544 2123 86 17 3 chr4 5669901 5670191 -178618471 + AluSq SINE Alu 1 294 -19 1102 267 58 47 chr4 5670191 5670398 -178618264 + L1MEd LINE L1 575 778 -5341 341 247 0 12 chr4 5670482 5670567 -178618095 + MLT1E LTR MaLR 36 119 -474 626 234 0 23 chr4 5670567 5670765 -178617897 - FLAM_C SINE Alu 0 143 2 2063 100 21 0 chr4 5670775 5671064 -178617598 - AluSx SINE Alu -17 295 1 236 263 13 40 chr4 5671072 5671148 -178617514 + MLT1E3 LTR MaLR 12 85 -569 327 277 37 9 chr4 5671163 5671378 -178617284 + MLT1E3 LTR MaLR 193 397 -227 1835 206 101 30 chr4 5671382 5672484 -178616178 - SATR1 Satellite Satellite -20 1179 1 315 211 11 63 chr4 5672560 5672750 -178615912 + (TTA)n Simple_repeat Simple_repeat 1 180 0 2082 206 144 13 chr4 5672864 5674080 -178614582 - SATR1 Satellite Satellite -24 1374 1 2145 192 108 12 chr4 5674118 5674912 -178613750 - SATR1 Satellite Satellite -2 870 1 25057 101 13 14 chr4 5675266 5679053 -178609609 + HERVE LTR ERV1 1108 4945 -2868 2135 204 106 2 chr4 5679059 5680308 -178608354 - SATR1 Satellite Satellite 0 1379 1 2055 155 111 40 chr4 5680325 5680886 -178607776 - SATR1 Satellite Satellite 0 600 1 892 219 286 9 chr4 5680916 5681245 -178607417 - SATR1 Satellite Satellite -3 467 48 1305 101 29 14 chr4 5681249 5681456 -178607206 - AluSq SINE Alu -91 222 13 4057 107 35 2 chr4 5682441 5683076 -178605586 - L1PA5 LINE L1 -32 6122 5467 2086 123 0 3 chr4 5683255 5683557 -178605105 - AluSg SINE Alu -9 301 1 1796 237 24 26 chr4 5683560 5684028 -178604634 - MLT1C LTR MaLR 0 467 1 2674 142 19 54 chr4 5684036 5684161 -178604501 + L1MA8 LINE L1 5719 5847 -444 1678 160 3 35 chr4 5684161 5684303 -178604359 + AluJb SINE Alu 1 146 -166 1984 75 104 4 chr4 5684303 5684583 -178604079 + AluSp SINE Alu 2 309 -4 1678 160 3 35 chr4 5684583 5684753 -178603909 + AluJb SINE Alu 146 303 -9 2674 142 19 54 chr4 5684753 5685148 -178603514 + L1MA8 LINE L1 5847 6221 -70 7558 111 54 11 chr4 5685153 5686309 -178602353 - HSMAR2 DNA Mariner -5 1297 93 309 262 123 41 chr4 5686820 5686942 -178601720 - MIR SINE MIR -7 255 124 760 129 313 0 chr4 5686947 5687094 -178601568 - MER46A DNA MER2_type 0 236 44 198 274 39 0 chr4 5687116 5687167 -178601495 - MIR SINE MIR -165 97 45 23 0 0 0 chr4 5687424 5687447 -178601215 + AT_rich Low_complexity Low_complexity 1 23 0 873 136 8 0 chr4 5688022 5688154 -178600508 + FLAM_A SINE Alu 1 133 0 202 308 70 64 chr4 5688346 5688518 -178600144 - L2 LINE L2 -3061 253 81 1131 183 0 24 chr4 5689319 5689532 -178599130 + AluJo SINE Alu 85 292 -20 1802 149 3 13 chr4 5690630 5690931 -178597731 + AluJb SINE Alu 1 298 -14 271 284 65 7 chr4 5690939 5691094 -178597568 + L1ME4a LINE L1 5956 6119 -2 490 264 87 5 chr4 5691118 5691326 -178597336 + L1MC4a LINE L1 5674 5898 -1910 892 253 80 118 chr4 5691331 5691967 -178596695 + L1ME3A LINE L1 5559 6170 0 2099 104 3 28 chr4 5692674 5692992 -178595670 + AluSp SINE Alu 1 310 -3 544 276 144 0 chr4 5693552 5693726 -178594936 + MIR SINE MIR 13 211 -51 2018 119 3 19 chr4 5693774 5694086 -178594576 - AluSx SINE Alu -5 307 1 380 201 166 14 chr4 5694193 5694332 -178594330 + MER106B DNA MER1_type 865 1024 -35 292 43 109 0 chr4 5694325 5694371 -178594291 - MER106A DNA MER1_type -13 223 173 * 2193 102 0 0 chr4 5694402 5694697 -178593965 - AluSq SINE Alu -18 295 1 212 280 224 28 chr4 5694743 5694850 -178593812 - MER5B DNA MER1_type 0 178 51 2374 41 0 10 chr4 5694969 5695260 -178593402 - AluY SINE Alu -23 288 1 214 358 0 0 chr4 5695638 5695719 -178592943 + MIR SINE MIR 59 139 -69 1847 131 13 23 chr4 5696072 5696377 -178592285 + AluJb SINE Alu 1 302 -10 509 138 0 0 chr4 5697556 5697643 -178591019 - L1MA9 LINE L1 0 6312 6226 1147 135 53 55 chr4 5697654 5697944 -178590718 - L1MA9 LINE L1 -15 6285 6007 191 175 79 79 chr4 5697948 5698011 -178590651 + L2 LINE L2 3202 3264 -8 2039 77 0 58 chr4 5698632 5698942 -178589720 - AluSg SINE Alu -18 292 1 286 236 89 102 chr4 5698984 5699141 -178589521 + MIR3 SINE MIR 36 190 -18 408 268 126 35 chr4 5699574 5699772 -178588890 - L1MC/D LINE L1 -2018 5790 5575 300 266 65 81 chr4 5700893 5701017 -178587645 - L2 LINE L2 -14 3258 3137 181 200 25 0 chr4 5701060 5701100 -178587562 - L2 LINE L2 -1 3271 3231 2060 102 23 0 chr4 5701389 5701692 -178586970 + AluSg SINE Alu 1 310 0 2005 116 9 38 chr4 5702268 5702588 -178586074 + AluSq SINE Alu 1 311 -2 326 289 250 19 chr4 5702732 5702940 -178585722 + MIR SINE MIR 7 262 0 921 253 37 17 chr4 5703532 5703773 -178584889 + MIR SINE MIR 17 262 0 22 0 0 0 chr4 5703811 5703833 -178584829 + AT_rich Low_complexity Low_complexity 1 22 0 363 169 26 39 chr4 5703945 5704022 -178584640 + MIR SINE MIR 187 262 0 1395 80 0 50 chr4 5704193 5704393 -178584269 - AluSc SINE Alu -13 296 107 2507 55 0 0 chr4 5704394 5704701 -178583961 - AluY SINE Alu -4 307 1 312 240 69 98 chr4 5704701 5704905 -178583757 - L1MC/D LINE L1 -515 5606 5409 3111 81 39 9 chr4 5705344 5705736 -178582926 + MLT2A1 LTR ERVL 1 409 -35 318 106 0 0 chr4 5705736 5705783 -178582879 + (TA)n Simple_repeat Simple_repeat 2 48 0 3111 81 39 9 chr4 5705783 5705821 -178582841 + MLT2A1 LTR ERVL 409 444 0 272 197 13 53 chr4 5705833 5705864 -178582798 + (TAA)n Simple_repeat Simple_repeat 2 33 -41 805 153 0 0 chr4 5705864 5705982 -178582680 + FLAM_C SINE Alu 1 118 -15 272 197 13 53 chr4 5705982 5706026 -178582636 + (TAA)n Simple_repeat Simple_repeat 33 74 0 275 311 19 0 chr4 5706179 5706285 -178582377 + LTR16C LTR ERVL 17 124 -367 1994 168 109 26 chr4 5707123 5707405 -178581257 - LTR32 LTR ERVL 0 471 141 180 0 0 0 chr4 5707405 5707425 -178581237 + (CAGGA)n Simple_repeat Simple_repeat 5 24 0 1994 168 109 26 chr4 5707425 5707564 -178581098 - LTR32 LTR ERVL -330 141 15 632 253 104 22 chr4 5707567 5707749 -178580913 + MIR SINE MIR 47 243 -19 380 264 11 0 chr4 5707962 5708049 -178580613 - MIR SINE MIR -60 202 115 2187 104 0 0 chr4 5708325 5708623 -178580039 + AluSx SINE Alu 1 298 -14 648 174 0 3 chr4 5708623 5708738 -178579924 - LTR18A LTR ERVL -6 351 248 715 286 61 5 chr4 5708891 5709087 -178579575 - LTR18A LTR ERVL -147 210 4 398 272 48 48 chr4 5709200 5709347 -178579315 - MER117 DNA MER1_type -49 148 2 3984 99 5 0 chr4 5709564 5710119 -178578543 + L1PA10 LINE L1 5611 6168 0 21 0 0 0 chr4 5710466 5710487 -178578175 + GC_rich Low_complexity Low_complexity 1 21 0 1896 187 118 1 chr4 5711098 5711830 -178576832 - SATR1 Satellite Satellite -2 817 1 35 24 0 0 chr4 5711830 5711872 -178576790 + AT_rich Low_complexity Low_complexity 1 42 0 378 236 11 35 chr4 5711922 5712096 -178576566 + (TAA)n Simple_repeat Simple_repeat 3 172 0 22 35 0 0 chr4 5712143 5712172 -178576490 + AT_rich Low_complexity Low_complexity 1 29 0 1734 203 114 31 chr4 5712218 5713218 -178575444 + SATR1 Satellite Satellite 1 1083 -131 3478 219 16 62 chr4 5713491 5714507 -178574155 - LTR5 LTR ERVK 0 969 1 34 24 0 0 chr4 5714968 5715009 -178573653 + AT_rich Low_complexity Low_complexity 1 41 0 2774 245 24 39 chr4 5715020 5715270 -178573392 - L1MB3 LINE L1 -30 6153 5901 1914 124 36 0 chr4 5715270 5715544 -178573118 - AluSx SINE Alu -17 295 12 2774 245 24 39 chr4 5715544 5715644 -178573018 - L1MB3 LINE L1 -282 5901 5801 230 81 27 0 chr4 5715644 5715681 -178572981 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 1708 178 0 3 chr4 5715683 5715976 -178572686 - AluSx SINE Alu -12 300 9 2774 245 24 39 chr4 5715976 5716977 -178571685 - L1MB3 LINE L1 -383 5800 4818 2109 122 6 3 chr4 5717022 5717334 -178571328 + AluSp SINE Alu 1 313 0 1187 214 18 68 chr4 5717420 5717619 -178571043 - L1MA4 LINE L1 -170 6130 5958 1691 163 3 3 chr4 5717619 5717902 -178570760 - AluSx SINE Alu -29 283 1 1187 214 18 68 chr4 5717902 5718085 -178570577 - L1MA4 LINE L1 -342 5958 5767 282 259 105 35 chr4 5718123 5718266 -178570396 + HsTC2 DNA Tc2 1633 1785 -113 1971 151 0 34 chr4 5718271 5718595 -178570067 + AluSp SINE Alu 1 313 0 309 313 20 14 chr4 5718737 5718884 -178569778 + MER5B DNA MER1_type 25 172 -6 701 230 46 0 chr4 5718988 5719184 -178569478 - MER6B DNA MER2_type -1 209 5 1304 146 27 18 chr4 5721074 5721294 -178567368 + AluSq SINE Alu 1 222 -91 1945 186 119 24 chr4 5721299 5723156 -178565506 + SATR1 Satellite Satellite 1 2035 -62 1683 211 110 27 chr4 5723167 5723735 -178564927 + SATR1 Satellite Satellite 1 615 -20 27241 104 11 10 chr4 5723735 5727790 -178560872 - HERVE LTR ERV1 -2648 5165 1108 239 207 7 64 chr4 5727844 5727984 -178560678 + (TAA)n Simple_repeat Simple_repeat 1 132 0 1819 217 113 12 chr4 5728137 5729893 -178558769 + SATR1 Satellite Satellite 1 1933 -130 25122 108 12 12 chr4 5729900 5733732 -178554930 - HERVE LTR ERV1 -2869 4944 1110 292 219 5 59 chr4 5733795 5733982 -178554680 + (TAA)n Simple_repeat Simple_repeat 2 178 0 22 70 0 0 chr4 5733985 5734028 -178554634 + AT_rich Low_complexity Low_complexity 1 43 0 1404 240 122 40 chr4 5734075 5735067 -178553595 + SATR1 Satellite Satellite 1 1073 -144 554 227 258 2 chr4 5735168 5735444 -178553218 + SATR1 Satellite Satellite 1 346 -144 806 204 251 57 chr4 5735502 5735909 -178552753 + SATR1 Satellite Satellite 1 485 -2 863 235 206 40 chr4 5735929 5737226 -178551436 + SATR1 Satellite Satellite 1 1512 -405 2039 128 7 3 chr4 5738917 5739221 -178549441 + AluSq SINE Alu 1 305 -8 186 276 105 13 chr4 5739314 5739390 -178549272 - L2 LINE L2 -32 3240 3158 1904 103 0 8 chr4 5739644 5739905 -178548757 - AluSg SINE Alu -51 259 1 269 371 48 14 chr4 5740269 5740479 -178548183 + MIR SINE MIR 32 248 -14 34 0 0 0 chr4 5741267 5741301 -178547361 + AT_rich Low_complexity Low_complexity 1 34 0 2867 244 23 32 chr4 5741321 5741568 -178547094 - L1MB3 LINE L1 -32 6151 5903 1984 161 0 0 chr4 5741568 5741873 -178546789 - AluSx SINE Alu -7 305 1 2867 244 23 32 chr4 5741873 5741975 -178546687 - L1MB3 LINE L1 -280 5903 5802 2058 130 3 3 chr4 5741975 5742302 -178546360 - AluSx SINE Alu 0 327 1 2867 244 23 32 chr4 5742302 5743295 -178545367 - L1MB3 LINE L1 -381 5802 4818 2308 104 3 3 chr4 5743340 5743649 -178545013 + AluSp SINE Alu 1 309 -4 1151 199 2 108 chr4 5743728 5743951 -178544711 - L1MA4 LINE L1 -170 6130 5968 1682 187 0 3 chr4 5743951 5744235 -178544427 - AluSx SINE Alu -29 283 1 1151 199 2 108 chr4 5744235 5744418 -178544244 - L1MA4 LINE L1 -332 5968 5767 300 259 101 29 chr4 5744460 5744599 -178544063 + HsTC2 DNA Tc2 1635 1783 -115 2183 108 0 57 chr4 5744604 5744936 -178543726 + AluSp SINE Alu 1 313 0 339 272 88 0 chr4 5745131 5745245 -178543417 + MER5B DNA MER1_type 50 173 -5 320 173 37 12 chr4 5745349 5745430 -178543232 - MER6 DNA MER2_type 0 865 783 221 297 31 0 chr4 5746604 5746668 -178541994 + MER91 DNA MER1_type 125 190 0 1601 203 22 30 chr4 5746830 5747195 -178541467 - MLT1A1 LTR MaLR -3 362 1 739 313 114 16 chr4 5747753 5748251 -178540411 - L1ME3A LINE L1 -208 5962 5416 322 274 10 70 chr4 5748757 5748958 -178539704 + L1ME4a LINE L1 5676 5864 -257 223 320 152 8 chr4 5748992 5749117 -178539545 - MER5A DNA MER1_type -3 186 44 * 380 291 90 8 chr4 5749007 5749141 -178539521 + MER5A DNA MER1_type 37 181 -8 2308 113 0 0 chr4 5749290 5749590 -178539072 + AluSq SINE Alu 1 300 -13 1579 173 40 23 chr4 5749603 5749776 -178538886 - AluJo SINE Alu -7 305 123 216 0 0 0 chr4 5749776 5749800 -178538862 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1579 173 40 23 chr4 5749800 5749926 -178538736 - AluJo SINE Alu -189 123 1 331 214 60 0 chr4 5749968 5750052 -178538610 - MER20 DNA MER1_type -12 207 119 875 234 5 0 chr4 5750077 5750291 -178538371 + L1MA4 LINE L1 6071 6285 -15 33 0 0 0 chr4 5750298 5750331 -178538331 + AT_rich Low_complexity Low_complexity 1 33 0 288 194 32 16 chr4 5750331 5750393 -178538269 - MER20 DNA MER1_type -152 67 5 29 0 0 0 chr4 5750591 5750620 -178538042 + AT_rich Low_complexity Low_complexity 1 29 0 554 297 76 34 chr4 5750652 5751151 -178537511 + L1ME4a LINE L1 5578 6097 -24 239 286 43 0 chr4 5752237 5752307 -178536355 + MIR SINE MIR 117 189 -73 1477 268 90 39 chr4 5752484 5753048 -178535614 + MLT1E LTR MaLR 1 593 0 1764 144 25 9 chr4 5753093 5753166 -178535496 - MER2 DNA MER2_type 0 345 275 2243 114 3 13 chr4 5753166 5753481 -178535181 + AluSx SINE Alu 1 312 0 1764 144 25 9 chr4 5753481 5753726 -178534936 - MER2 DNA MER2_type -70 275 22 1060 293 157 39 chr4 5753728 5754878 -178533784 + L2 LINE L2 2006 3308 -5 225 250 19 0 chr4 5754878 5754930 -178533732 + GA-rich Low_complexity Low_complexity 1 53 0 1402 249 99 43 chr4 5754982 5755495 -178533167 + MLT1H1 LTR MaLR 14 555 0 293 265 20 20 chr4 5755496 5755598 -178533064 + L2 LINE L2 2291 2392 -922 1361 193 68 0 chr4 5755714 5756035 -178532627 + L1MB3 LINE L1 5839 6181 -2 21 26 0 26 chr4 5756864 5756881 -178531781 + AT_rich Low_complexity Low_complexity 1 17 -21 2119 118 0 3 chr4 5756881 5757168 -178531494 + AluSx SINE Alu 1 286 -26 21 26 0 26 chr4 5757168 5757189 -178531473 + AT_rich Low_complexity Low_complexity 17 38 0 248 284 95 14 chr4 5757326 5757400 -178531262 + L2 LINE L2 3188 3267 -5 394 281 98 66 chr4 5757891 5758318 -178530344 + L2 LINE L2 2553 3008 -264 249 105 0 0 chr4 5758406 5758444 -178530218 + MLT1J1 LTR MaLR 71 108 -338 422 308 60 34 chr4 5758464 5758730 -178529932 + MLT1J LTR MaLR 237 509 -2 328 306 96 25 chr4 5758816 5758973 -178529689 + L2 LINE L2 3097 3264 -8 2396 154 16 34 chr4 5759054 5759117 -178529545 + L1PA16 LINE L1 5724 5787 -379 1765 137 10 58 chr4 5759117 5759245 -178529417 + AluJo SINE Alu 6 139 -173 2072 108 0 17 chr4 5759245 5759540 -178529122 + AluSq SINE Alu 1 290 -23 1765 137 10 58 chr4 5759540 5759724 -178528938 + AluJo SINE Alu 139 303 -9 2396 154 16 34 chr4 5759724 5760108 -178528554 + L1PA16 LINE L1 5787 6163 -3 191 88 29 0 chr4 5761346 5761380 -178527282 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 469 248 0 54 chr4 5761399 5761548 -178527114 + L1ME4a LINE L1 5965 6105 -16 2072 103 7 10 chr4 5761884 5762184 -178526478 + AluSx SINE Alu 1 299 -13 351 0 0 0 chr4 5762213 5762252 -178526410 + (GA)n Simple_repeat Simple_repeat 1 39 0 244 277 12 12 chr4 5762258 5762341 -178526321 + L1ME LINE L1 5741 5823 -298 1763 168 3 0 chr4 5762379 5762688 -178525974 - AluJo SINE Alu -2 310 1 243 305 84 0 chr4 5762909 5763004 -178525658 - MER112 DNA MER1_type -131 129 27 1969 69 76 4 chr4 5763191 5763467 -178525195 + AluY SINE Alu 1 296 -15 1480 181 0 22 chr4 5763521 5763836 -178524826 - AluJo SINE Alu -1 311 4 221 224 94 47 chr4 5763931 5764016 -178524646 - MIR3 SINE MIR -7 201 113 * 430 294 87 0 chr4 5764000 5764126 -178524536 + MIR SINE MIR 28 164 -98 2091 117 0 0 chr4 5764128 5764448 -178524214 + AluSg SINE Alu 1 320 0 456 19 0 0 chr4 5764449 5764502 -178524160 + (CA)n Simple_repeat Simple_repeat 2 54 0 515 233 57 62 chr4 5764660 5764836 -178523826 - MIR3 SINE MIR -4 204 30 615 274 65 47 chr4 5766089 5766366 -178522296 + MLT1L LTR MaLR 201 482 -133 187 248 22 146 chr4 5766368 5766505 -178522157 - MIR SINE MIR -141 121 2 213 39 0 0 chr4 5767702 5767728 -178520934 + (TG)n Simple_repeat Simple_repeat 1 26 0 2176 94 3 10 chr4 5767736 5768043 -178520619 - AluSg SINE Alu -5 305 1 281 297 94 23 chr4 5768275 5768403 -178520259 + MER34B LTR ERV1 23 159 -406 553 261 42 50 chr4 5768515 5768756 -178519906 + MER34B LTR ERV1 324 562 -3 225 109 0 109 chr4 5768757 5768803 -178519859 - MIR SINE MIR -115 147 107 260 279 38 0 chr4 5769271 5769350 -178519312 + MER117 DNA MER1_type 59 140 -57 423 280 143 23 chr4 5769669 5769844 -178518818 + MIR SINE MIR 57 252 -10 189 293 35 0 chr4 5769855 5769913 -178518749 - L2 LINE L2 0 3272 3213 235 306 42 0 chr4 5769946 5770018 -178518644 - MIR SINE MIR -10 252 178 397 281 169 47 chr4 5770201 5770521 -178518141 + L1ME4a LINE L1 5747 6105 -16 3059 151 27 23 chr4 5770526 5770710 -178517952 + L1MB2 LINE L1 5606 5788 -383 2559 112 112 109 chr4 5770710 5771372 -178517290 - MER4A LTR ERV1 0 664 1 3059 151 27 23 chr4 5771372 5771751 -178516911 + L1MB2 LINE L1 5788 6171 0 302 328 25 8 chr4 5772423 5772545 -178516117 + L2 LINE L2 2670 2793 -521 668 303 78 18 chr4 5772549 5772767 -178515895 - MIR SINE MIR -9 253 23 1892 176 37 29 chr4 5773292 5773510 -178515152 - MLT1B LTR MaLR -11 379 155 2019 130 7 0 chr4 5773510 5773809 -178514853 + AluSq SINE Alu 1 301 -12 1892 176 37 29 chr4 5773809 5773966 -178514696 - MLT1B LTR MaLR -235 155 1 510 313 72 15 chr4 5774085 5774350 -178514312 - MARNA DNA Mariner -230 356 77 230 271 0 0 chr4 5774361 5774409 -178514253 + MIR SINE MIR 86 133 -75 760 176 0 61 chr4 5774414 5774579 -178514083 + L1MA9 LINE L1 5814 5968 -344 872 163 17 22 chr4 5774579 5774757 -178513905 + FRAM SINE Alu 1 176 0 1393 190 57 10 chr4 5774763 5775063 -178513599 + L1MA9 LINE L1 5959 6272 -40 545 217 34 63 chr4 5775346 5775521 -178513141 + L1MB8 LINE L1 6004 6173 -5 1878 218 35 2 chr4 5776053 5776485 -178512177 + L1MB3 LINE L1 4829 5274 -872 1329 166 16 4 chr4 5776484 5776731 -178511931 - L1MB3 LINE L1 -235 5948 5699 * 4521 157 37 37 chr4 5776732 5776769 -178511893 + L1MB3 LINE L1 5263 5299 -884 1896 132 3 3 chr4 5776769 5777058 -178511604 + AluSq SINE Alu 1 289 -24 4521 157 37 37 chr4 5777058 5777939 -178510723 + L1MB3 LINE L1 5298 6181 -2 546 120 0 0 chr4 5777963 5778038 -178510624 + AluJ/FLAM SINE Alu 3 77 -235 22 56 0 0 chr4 5778061 5778097 -178510565 + AT_rich Low_complexity Low_complexity 1 36 0 248 304 76 0 chr4 5778130 5778209 -178510453 + L2 LINE L2 3168 3252 -20 1973 108 11 3 chr4 5778341 5778628 -178510034 + AluSp SINE Alu 1 289 -24 392 182 3 85 chr4 5778633 5778754 -178509908 + L1MD3 LINE L1 7660 7789 -206 1917 141 0 16 chr4 5778754 5779060 -178509602 - AluSx SINE Alu -11 301 1 392 182 3 85 chr4 5779060 5779079 -178509583 + L1MD3 LINE L1 7789 7995 0 1014 199 16 0 chr4 5779832 5780018 -178508644 - MER5A DNA MER1_type 0 189 1 230 328 0 0 chr4 5780146 5780207 -178508455 - L2 LINE L2 -2 3311 3251 326 292 76 7 chr4 5780289 5780433 -178508229 + HAL1b LINE L1 397 550 -798 723 240 35 58 chr4 5780460 5780718 -178507944 - L2 LINE L2 -4 3309 3058 2122 115 0 0 chr4 5781071 5781367 -178507295 + AluSx SINE Alu 1 296 -16 2022 122 3 3 chr4 5781607 5781903 -178506759 + AluSq SINE Alu 1 296 -17 611 271 101 95 chr4 5781949 5782382 -178506280 + L1MEc LINE L1 2105 2489 -3726 2232 52 21 7 chr4 5782382 5782671 -178505991 + AluY SINE Alu 2 294 -17 611 271 101 95 chr4 5782671 5782715 -178505947 + L1MEc LINE L1 2489 2531 -3684 243 170 0 0 chr4 5782733 5782780 -178505882 + (TA)n Simple_repeat Simple_repeat 2 48 0 226 292 0 0 chr4 5782781 5782870 -178505792 - L1MC4 LINE L1 -1340 6702 6614 302 341 0 0 chr4 5782870 5782952 -178505710 + L1MC4 LINE L1 6622 6703 -1339 * 382 272 0 22 chr4 5782904 5782996 -178505666 - L1MC4 LINE L1 -1339 6703 6614 * 394 300 0 0 chr4 5782964 5783054 -178505608 + L1MC4 LINE L1 6614 6703 -1339 837 121 0 0 chr4 5783055 5783179 -178505483 - AluSp/q SINE Alu -14 299 176 346 327 119 0 chr4 5783225 5783393 -178505269 + L1MEc LINE L1 2627 2814 -3401 795 226 40 32 chr4 5783395 5783627 -178505035 + MIR SINE MIR 23 261 -1 382 340 47 0 chr4 5783805 5783955 -178504707 - L3 LINE CR1 -15 1562 1406 938 116 0 0 chr4 5783968 5784173 -178504489 - AluSx SINE Alu 0 356 152 1062 159 0 53 chr4 5784176 5784402 -178504260 + AluJo SINE Alu 97 310 -2 259 286 132 22 chr4 5784592 5784683 -178503979 + L2 LINE L2 3164 3264 -49 1123 75 20 0 chr4 5784715 5784862 -178503800 - AluSx SINE Alu -162 150 1 210 118 0 0 chr4 5784957 5784991 -178503671 + (TCCA)n Simple_repeat Simple_repeat 1 34 0 470 304 120 0 chr4 5785002 5785193 -178503469 - L2 LINE L2 0 3313 3100 185 244 0 0 chr4 5785453 5785494 -178503168 - L3 LINE CR1 -582 995 955 214 310 86 52 chr4 5785505 5785679 -178502983 - L3 LINE CR1 -1133 444 265 199 239 0 22 chr4 5785919 5785965 -178502697 - MIR SINE MIR -63 145 101 332 278 18 71 chr4 5786129 5786298 -178502364 + L2 LINE L2 2305 2464 -850 360 64 0 0 chr4 5786333 5786380 -178502282 + (TGGA)n Simple_repeat Simple_repeat 4 50 0 282 56 0 0 chr4 5786497 5786533 -178502129 + (GGAGAA)n Simple_repeat Simple_repeat 5 40 0 1870 119 44 10 chr4 5786552 5786847 -178501815 + AluSx SINE Alu 1 305 -7 210 145 0 48 chr4 5786857 5786919 -178501743 + (GGGAGA)n Simple_repeat Simple_repeat 3 61 0 * 310 200 24 41 chr4 5786913 5787001 -178501661 + GA-rich Low_complexity Low_complexity 1 86 -81 2267 102 0 0 chr4 5787001 5787306 -178501356 + AluSg SINE Alu 1 305 -5 310 200 24 41 chr4 5787306 5787387 -178501275 + GA-rich Low_complexity Low_complexity 86 167 0 292 227 19 143 chr4 5787897 5788052 -178500610 - MIR SINE MIR -44 164 28 1518 190 13 3 chr4 5788213 5788513 -178500149 + AluJo SINE Alu 1 303 -9 220 240 29 29 chr4 5790194 5790298 -178498364 + (CCCG)n Simple_repeat Simple_repeat 2 105 0 562 204 68 34 chr4 5791114 5791261 -178497401 + MER45A DNA AcHobo 27 178 0 300 257 83 76 chr4 5791350 5791494 -178497168 - L2 LINE L2 0 3313 3169 198 0 0 0 chr4 5791686 5791708 -178496954 + (TTTC)n Simple_repeat Simple_repeat 2 23 0 1610 155 7 40 chr4 5791710 5792014 -178496648 - AluJo SINE Alu -18 294 1 506 240 154 0 chr4 5792149 5792324 -178496338 + MLT1J1 LTR MaLR 238 439 -7 1870 112 14 11 chr4 5792434 5792719 -178495943 - AluSg SINE Alu -24 286 1 1880 93 17 42 chr4 5792814 5793103 -178495559 + AluSx SINE Alu 21 302 -10 5418 50 19 0 chr4 5793451 5794126 -178494536 - L1PA5 LINE L1 0 6154 5467 1551 118 0 65 chr4 5794308 5794630 -178494032 - AluSg SINE Alu -9 301 1 1796 237 24 26 chr4 5794633 5795101 -178493561 - MLT1C LTR MaLR 0 467 1 2674 142 19 54 chr4 5795109 5795234 -178493428 + L1MA8 LINE L1 5719 5847 -444 1666 159 3 41 chr4 5795234 5795378 -178493284 + AluJb SINE Alu 1 149 -163 1976 78 103 4 chr4 5795378 5795659 -178493003 + AluSp SINE Alu 2 310 -3 1666 159 3 41 chr4 5795659 5795829 -178492833 + AluJb SINE Alu 149 303 -9 2674 142 19 54 chr4 5795829 5796224 -178492438 + L1MA8 LINE L1 5847 6221 -70 7558 111 54 11 chr4 5796229 5797385 -178491277 - HSMAR2 DNA Mariner -5 1297 93 309 262 123 41 chr4 5797898 5798020 -178490642 - MIR SINE MIR -7 255 124 760 129 313 0 chr4 5798025 5798172 -178490490 - MER46A DNA MER2_type 0 236 44 198 274 39 0 chr4 5798194 5798245 -178490417 - MIR SINE MIR -165 97 45 23 0 0 0 chr4 5798502 5798525 -178490137 + AT_rich Low_complexity Low_complexity 1 23 0 873 136 8 0 chr4 5799100 5799232 -178489430 + FLAM_A SINE Alu 1 133 0 212 331 58 52 chr4 5799423 5799595 -178489067 - L2 LINE L2 -3061 253 81 1131 183 0 24 chr4 5800396 5800609 -178488053 + AluJo SINE Alu 85 292 -20 1817 146 3 13 chr4 5801707 5802008 -178486654 + AluJb SINE Alu 1 298 -14 375 297 65 7 chr4 5802016 5802171 -178486491 + L1ME4a LINE L1 5956 6119 -2 357 282 35 7 chr4 5802260 5802402 -178486260 + L1MC4a LINE L1 5753 5898 -1910 892 253 80 118 chr4 5802407 5803043 -178485619 + L1ME3A LINE L1 5559 6170 0 2085 107 3 28 chr4 5803750 5804068 -178484594 + AluSp SINE Alu 1 310 -3 544 276 144 0 chr4 5804628 5804802 -178483860 + MIR SINE MIR 13 211 -51 2018 119 3 19 chr4 5804850 5805162 -178483500 - AluSx SINE Alu -5 307 1 380 201 166 14 chr4 5805269 5805408 -178483254 + MER106B DNA MER1_type 865 1024 -35 292 43 109 0 chr4 5805401 5805447 -178483215 - MER106A DNA MER1_type -13 223 173 * 2207 98 0 0 chr4 5805478 5805773 -178482889 - AluSq SINE Alu -18 295 1 226 271 224 28 chr4 5805819 5805926 -178482736 - MER5B DNA MER1_type 0 178 51 2362 45 0 10 chr4 5806045 5806336 -178482326 - AluY SINE Alu -23 288 1 193 294 0 0 chr4 5806714 5806765 -178481897 + MIR SINE MIR 59 109 -99 1847 131 13 23 chr4 5807148 5807453 -178481209 + AluJb SINE Alu 1 302 -10 516 126 0 0 chr4 5808632 5808719 -178479943 - L1MA9 LINE L1 0 6312 6226 279 157 0 0 chr4 5808730 5808781 -178479881 + (TA)n Simple_repeat Simple_repeat 2 52 0 1147 135 53 55 chr4 5808781 5809020 -178479642 - L1MA9 LINE L1 -15 6285 6007 191 175 79 79 chr4 5809024 5809087 -178479575 + L2 LINE L2 3202 3264 -8 2039 77 0 58 chr4 5809708 5810018 -178478644 - AluSg SINE Alu -18 292 1 286 236 89 102 chr4 5810060 5810217 -178478445 + MIR3 SINE MIR 36 190 -18 362 279 127 35 chr4 5810651 5810848 -178477814 - L1MC/D LINE L1 -2018 5790 5576 300 266 65 81 chr4 5811970 5812094 -178476568 - L2 LINE L2 -14 3258 3137 181 200 25 0 chr4 5812137 5812177 -178476485 - L2 LINE L2 -1 3271 3231 2033 106 23 0 chr4 5812466 5812769 -178475893 + AluSg SINE Alu 1 310 0 186 103 0 0 chr4 5812891 5812920 -178475742 + (T)n Simple_repeat Simple_repeat 1 29 0 2050 114 3 43 chr4 5813346 5813670 -178474992 + AluSq SINE Alu 1 311 -2 326 289 250 19 chr4 5813814 5814022 -178474640 + MIR SINE MIR 7 262 0 921 253 37 17 chr4 5814614 5814855 -178473807 + MIR SINE MIR 17 262 0 22 0 0 0 chr4 5814893 5814915 -178473747 + AT_rich Low_complexity Low_complexity 1 22 0 363 169 26 39 chr4 5815027 5815104 -178473558 + MIR SINE MIR 187 262 0 1403 80 0 50 chr4 5815275 5815476 -178473186 - AluSc SINE Alu -12 297 107 2625 36 0 0 chr4 5815477 5815786 -178472876 - AluY SINE Alu -2 309 1 312 240 69 98 chr4 5815786 5815990 -178472672 - L1MC/D LINE L1 -515 5606 5409 3098 77 47 12 chr4 5816429 5816821 -178471841 + MLT2A1 LTR ERVL 1 411 -33 441 95 0 0 chr4 5816821 5816884 -178471778 + (TA)n Simple_repeat Simple_repeat 1 63 0 3098 77 47 12 chr4 5816884 5816920 -178471742 + MLT2A1 LTR ERVL 411 444 0 779 161 0 0 chr4 5816963 5817081 -178471581 + FLAM_C SINE Alu 1 118 -15 198 103 0 0 chr4 5817084 5817113 -178471549 + (TAA)n Simple_repeat Simple_repeat 3 31 0 275 311 19 0 chr4 5817284 5817390 -178471272 + LTR16C LTR ERVL 17 124 -367 2155 168 73 36 chr4 5818228 5818669 -178469993 - LTR32 LTR ERVL 0 471 15 632 253 104 22 chr4 5818672 5818854 -178469808 + MIR SINE MIR 47 243 -19 380 264 11 0 chr4 5819067 5819154 -178469508 - MIR SINE MIR -60 202 115 2172 107 0 0 chr4 5819430 5819728 -178468934 + AluSx SINE Alu 1 298 -14 648 174 0 3 chr4 5819728 5819843 -178468819 - LTR18A LTR ERVL -6 351 248 703 291 61 5 chr4 5819996 5820192 -178468470 - LTR18A LTR ERVL -147 210 4 398 272 48 48 chr4 5820305 5820452 -178468210 - MER117 DNA MER1_type -49 148 2 3973 99 5 0 chr4 5820669 5821224 -178467438 + L1PA10 LINE L1 5611 6168 0 2116 113 7 0 chr4 5821312 5821622 -178467040 + AluSp SINE Alu 2 313 0 2231 100 7 0 chr4 5821815 5822125 -178466537 + AluSx SINE Alu 1 312 0 285 291 75 15 chr4 5823309 5823443 -178465219 + L1ME3A LINE L1 5524 5665 -497 225 0 0 0 chr4 5823527 5823552 -178465110 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2097 100 0 0 chr4 5823552 5823832 -178464830 - AluSx SINE Alu -32 280 1 1648 152 0 55 chr4 5823832 5824142 -178464520 - AluJo SINE Alu -14 298 6 554 219 34 0 chr4 5824171 5824290 -178464372 + L1ME3A LINE L1 5850 5972 -198 245 189 344 0 chr4 5824297 5824387 -178464275 + L1ME3A LINE L1 6042 6162 -8 210 289 0 106 chr4 5824763 5824867 -178463795 - MIR SINE MIR -132 130 38 197 33 33 0 chr4 5825346 5825376 -178463286 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1534 133 47 36 chr4 5825378 5825656 -178463006 - AluJo SINE Alu -23 289 9 2373 74 0 3 chr4 5825724 5826036 -178462626 + AluY SINE Alu 1 311 0 2092 92 3 3 chr4 5826798 5827138 -178461524 - AluSp SINE Alu 0 340 1 2142 117 10 0 chr4 5827434 5827743 -178460919 - AluSx SINE Alu 0 312 1 2465 102 36 28 chr4 5828706 5829067 -178459595 + THE1B LTR MaLR 1 364 0 336 298 258 25 chr4 5829362 5829560 -178459102 - MIR SINE MIR -9 253 10 1875 124 34 0 chr4 5830282 5830573 -178458089 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr4 5831636 5831657 -178457005 + AT_rich Low_complexity Low_complexity 1 21 0 2284 198 77 73 chr4 5832040 5832797 -178455865 + L1MD1 LINE L1 14 5423 -1117 732 190 28 0 chr4 5832811 5832953 -178455709 + L1MA9 LINE L1 6108 6253 -59 1414 178 69 4 chr4 5832953 5833229 -178455433 + AluJo SINE Alu 1 294 -18 180 0 0 0 chr4 5833285 5833305 -178455357 + (A)n Simple_repeat Simple_repeat 1 20 0 3777 191 51 72 chr4 5833325 5833898 -178454764 + L1MD1 LINE L1 5437 6020 -616 5536 101 25 6 chr4 5833898 5834701 -178453961 - L1MA2 LINE L1 0 6304 5487 3777 191 51 72 chr4 5834701 5835338 -178453324 + L1MD1 LINE L1 6020 6628 -8 1445 125 32 39 chr4 5835362 5835643 -178453019 - Tigger7 DNA MER2_type 0 2487 2209 557 163 0 0 chr4 5835651 5835737 -178452925 - Tigger7 DNA MER2_type -387 163 78 535 236 0 0 chr4 5836460 5836570 -178452092 - FRAM SINE Alu -67 109 1 2068 122 0 0 chr4 5836971 5837275 -178451387 + AluSx SINE Alu 1 304 -8 182 204 0 19 chr4 5837613 5837667 -178450995 + CT-rich Low_complexity Low_complexity 3 55 0 504 309 52 14 chr4 5838136 5838348 -178450314 + MIR SINE MIR 21 248 -14 906 188 14 29 chr4 5838466 5838674 -178449988 - AluJb SINE Alu -9 303 99 2140 110 0 0 chr4 5838738 5839028 -178449634 - AluSx SINE Alu -22 290 1 195 264 75 0 chr4 5839256 5839309 -178449353 + MIR SINE MIR 50 106 -156 1001 90 0 0 chr4 5839463 5839597 -178449065 + AluSp/q SINE Alu 171 304 -9 2079 114 0 3 chr4 5839608 5839905 -178448757 + AluSx SINE Alu 1 296 -16 2091 112 0 0 chr4 5840093 5840378 -178448284 - AluSx SINE Alu -24 288 4 180 332 127 9 chr4 5840577 5840806 -178447856 + L2 LINE L2 2999 3254 -59 235 200 52 13 chr4 5841643 5841758 -178446904 + L2 LINE L2 3101 3272 0 * 486 265 15 22 chr4 5841757 5841893 -178446769 - MIR SINE MIR -108 154 20 1877 137 3 29 chr4 5842077 5842390 -178446272 + AluSx SINE Alu 1 305 -7 2885 179 39 20 chr4 5842937 5843581 -178445081 + L1 LINE L1 4104 4759 -1387 2020 95 51 3 chr4 5844359 5844655 -178444007 - AluSg SINE Alu 0 310 1 2043 93 0 0 chr4 5846215 5846485 -178442177 - AluSg SINE Alu -40 270 1 1065 221 55 0 chr4 5847006 5847223 -178441439 - MIR SINE MIR -3 259 31 2326 63 3 16 chr4 5849683 5849998 -178438664 - AluY SINE Alu 0 311 1 299 267 110 20 chr4 5850583 5850729 -178437933 - MIR SINE MIR -60 202 44 195 297 144 8 chr4 5851130 5851248 -178437414 + MIR SINE MIR 79 212 -50 2223 111 0 0 chr4 5851524 5851831 -178436831 - AluSx SINE Alu -5 307 1 264 291 36 45 chr4 5851960 5852070 -178436592 + MIR3 SINE MIR 85 193 -15 306 244 39 0 chr4 5852194 5852272 -178436390 - MIR SINE MIR -70 192 112 249 197 14 113 chr4 5852336 5852407 -178436255 - L2 LINE L2 -20 3252 3189 653 253 96 35 chr4 5852505 5852734 -178435928 - MIR SINE MIR -8 254 12 454 143 220 0 chr4 5852826 5852917 -178435745 + MER81 DNA DNA 4 114 0 553 260 33 20 chr4 5853852 5854002 -178434660 + MIR SINE MIR 108 259 -3 302 211 14 56 chr4 5854000 5854071 -178434591 + L2 LINE L2 3246 3313 0 * 1877 140 31 63 chr4 5854188 5854539 -178434123 - MLT1B LTR MaLR 0 390 51 208 290 122 19 chr4 5854765 5854872 -178433790 + L2 LINE L2 2965 3082 -190 882 97 0 62 chr4 5854893 5855037 -178433625 + AluSc SINE Alu 1 135 -174 1962 122 0 26 chr4 5855038 5855341 -178433321 + AluSx SINE Alu 4 298 -14 354 282 154 26 chr4 5855367 5855484 -178433178 + L2 LINE L2 3139 3270 -2 359 155 19 126 chr4 5856056 5856159 -178432503 - MIR3 SINE MIR -5 203 112 443 289 10 0 chr4 5856161 5856265 -178432397 - L2 LINE L2 -2 3270 3166 294 172 11 151 chr4 5856475 5856568 -178432094 + MIR SINE MIR 11 90 -172 929 241 49 0 chr4 5856582 5856785 -178431877 - MLT1H1 LTR MaLR 0 555 343 539 292 82 18 chr4 5856826 5857045 -178431617 - MLT1H1 LTR MaLR -316 239 7 581 177 161 0 chr4 5857053 5857177 -178431485 + MIR SINE MIR 118 261 -1 1956 123 7 0 chr4 5857415 5857699 -178430963 - AluSx SINE Alu -26 286 1 465 19 0 0 chr4 5857917 5857971 -178430691 + (TG)n Simple_repeat Simple_repeat 2 55 0 520 304 117 26 chr4 5857995 5858172 -178430490 + MIR SINE MIR 6 210 -52 1748 146 80 50 chr4 5858172 5858536 -178430126 - THE1C LTR MaLR 0 375 1 520 304 117 26 chr4 5858536 5858588 -178430074 + MIR SINE MIR 210 256 -6 2306 126 27 36 chr4 5859353 5859718 -178428944 + THE1B LTR MaLR 3 364 0 2150 113 3 0 chr4 5860112 5860423 -178428239 - AluSx SINE Alu 0 312 1 1570 188 41 3 chr4 5860556 5860848 -178427814 + AluJo SINE Alu 1 303 -9 342 250 86 17 chr4 5860983 5861099 -178427563 + MER5A DNA MER1_type 38 161 -28 396 255 301 0 chr4 5861108 5861261 -178427401 - MIR SINE MIR -15 247 49 1816 149 3 14 chr4 5861483 5861772 -178426890 - AluJb SINE Alu -21 291 6 375 220 120 10 chr4 5861954 5862054 -178426608 + L2 LINE L2 3171 3281 -32 438 247 320 1 chr4 5862100 5862340 -178426322 + L2 LINE L2 2745 3045 -268 22 0 0 0 chr4 5862554 5862576 -178426086 + AT_rich Low_complexity Low_complexity 1 22 0 690 190 71 11 chr4 5862636 5862797 -178425865 - MER3 DNA MER1_type -65 144 5 378 0 0 0 chr4 5862825 5862867 -178425795 + (TG)n Simple_repeat Simple_repeat 1 42 0 25 0 0 0 chr4 5863650 5863675 -178424987 + AT_rich Low_complexity Low_complexity 1 25 0 922 140 0 0 chr4 5863711 5863854 -178424808 + FRAM SINE Alu 22 164 -12 249 140 0 0 chr4 5866783 5866840 -178421822 + (TC)n Simple_repeat Simple_repeat 2 58 0 2120 99 27 0 chr4 5867284 5867577 -178421085 - AluSx SINE Alu -11 301 1 732 241 141 0 chr4 5867726 5867917 -178420745 + Charlie1 DNA MER1_type 2 219 -2542 732 190 36 0 chr4 5867911 5868048 -178420614 + Charlie1 DNA MER1_type 2620 2761 0 42 20 0 0 chr4 5868203 5868252 -178420410 + AT_rich Low_complexity Low_complexity 1 49 0 213 290 43 0 chr4 5869731 5869800 -178418862 - L2 LINE L2 0 3272 3201 883 226 49 25 chr4 5870420 5870663 -178417999 + MIR SINE MIR 2 250 -12 309 248 34 39 chr4 5870815 5870918 -178417744 + MIR SINE MIR 87 191 -62 417 206 46 122 chr4 5871073 5871141 -178417521 - MER5B DNA MER1_type -55 123 51 207 0 0 0 chr4 5871141 5871164 -178417498 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2006 104 0 4 chr4 5871166 5871445 -178417217 - AluSg SINE Alu -32 278 1 417 206 46 122 chr4 5871445 5871504 -178417158 - MER5B DNA MER1_type -128 50 3 197 311 22 11 chr4 5872576 5872666 -178415996 + L3 LINE CR1 1268 1358 -219 503 308 92 25 chr4 5873326 5873566 -178415096 + MIR SINE MIR 7 262 0 2347 65 0 32 chr4 5873580 5873890 -178414772 - AluY SINE Alu -11 300 1 245 167 0 0 chr4 5876867 5876909 -178411753 + MER94 DNA DNA 70 111 -23 255 330 126 10 chr4 5876960 5877063 -178411599 - L2 LINE L2 -2 3270 3156 2040 129 0 3 chr4 5877441 5877750 -178410912 - AluSx SINE Alu -4 308 1 385 304 50 12 chr4 5877879 5878040 -178410622 + MIR SINE MIR 90 256 -6 289 363 40 0 chr4 5879198 5879322 -178409340 - L2 LINE L2 -3 3269 3141 769 143 75 8 chr4 5879977 5880110 -178408552 + AluSg/x SINE Alu 144 285 -27 1394 180 54 14 chr4 5880400 5880694 -178407968 - L1MB7 LINE L1 -9 6175 5870 309 194 16 0 chr4 5880699 5880761 -178407901 - L1MB7 LINE L1 -473 5705 5643 2091 107 30 3 chr4 5881412 5881712 -178406950 + AluSx SINE Alu 1 308 -4 1811 152 16 10 chr4 5881961 5882271 -178406391 - AluJo SINE Alu 0 312 1 1563 147 15 4 chr4 5882617 5882876 -178405786 + AluSx SINE Alu 1 262 -50 1571 117 0 25 chr4 5882882 5883121 -178405541 + AluSq SINE Alu 29 261 -52 842 168 173 11 chr4 5883518 5883697 -178404965 + AluJo SINE Alu 85 292 -20 195 293 103 60 chr4 5884990 5885106 -178403556 + MIR SINE MIR 31 151 -111 683 279 202 70 chr4 5885963 5886045 -178402617 + L2 LINE L2 1334 1404 -1910 1998 116 36 0 chr4 5886045 5886346 -178402316 + AluSx SINE Alu 1 312 0 683 279 202 70 chr4 5886346 5886552 -178402110 + L2 LINE L2 1404 1581 -1733 936 118 0 22 chr4 5886552 5886688 -178401974 - FLAM_C SINE Alu 0 133 1 683 279 202 70 chr4 5886688 5887183 -178401479 + L2 LINE L2 1581 2009 -1305 3304 136 84 4 chr4 5887183 5887720 -178400942 + LTR19B LTR ERV1 1 580 0 683 279 202 70 chr4 5887720 5887939 -178400723 + L2 LINE L2 2009 2471 -843 1920 130 24 0 chr4 5888111 5888404 -178400258 + AluSg SINE Alu 1 300 -10 246 337 74 0 chr4 5888670 5888765 -178399897 + MIR SINE MIR 38 139 -69 186 259 0 56 chr4 5888916 5888970 -178399692 - MIR3 SINE MIR -7 201 151 301 289 141 15 chr4 5888988 5889123 -178399539 - MER5A DNA MER1_type -29 160 9 189 226 226 0 chr4 5889131 5889184 -178399478 - MIR3 SINE MIR -48 160 96 461 287 71 10 chr4 5889192 5889392 -178399270 - MIR SINE MIR 0 262 48 1523 168 10 24 chr4 5889566 5889857 -178398805 - AluJb SINE Alu -25 287 1 859 133 0 0 chr4 5889867 5889995 -178398667 - FLAM_C SINE Alu -15 128 1 216 0 0 0 chr4 5890222 5890246 -178398416 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1956 53 3 86 chr4 5890249 5890552 -178398110 - AluY SINE Alu -32 279 2 830 174 25 0 chr4 5891196 5891357 -178397305 + L1MB7 LINE L1 5910 6074 -110 1029 214 68 80 chr4 5891357 5891694 -178396968 + MLT1B LTR MaLR 1 359 -108 1431 191 37 0 chr4 5891694 5891966 -178396696 - AluJo SINE Alu -30 282 1 1029 214 68 80 chr4 5891966 5892071 -178396591 + MLT1B LTR MaLR 359 464 -3 677 153 0 0 chr4 5892071 5892182 -178396480 + L1MB4 LINE L1 6067 6177 -3 210 186 0 47 chr4 5892197 5892240 -178396422 + MIR SINE MIR 154 194 -68 1233 116 0 0 chr4 5892421 5892594 -178396068 - AluSg/x SINE Alu -7 305 133 319 248 152 16 chr4 5892745 5892870 -178395792 + MIR SINE MIR 85 226 -36 282 363 18 9 chr4 5892919 5893032 -178395630 + L2 LINE L2 3197 3310 -3 2357 176 19 26 chr4 5893128 5893529 -178395133 + MLT1C LTR MaLR 1 400 -67 2326 75 0 0 chr4 5893529 5893823 -178394839 - AluY SINE Alu -17 294 1 2357 176 19 26 chr4 5893823 5893888 -178394774 + MLT1C LTR MaLR 400 464 -3 804 203 49 93 chr4 5894874 5895120 -178393542 + MLT1B LTR MaLR 1 235 -155 * 1310 194 113 76 chr4 5895119 5895295 -178393367 + MLT1C LTR MaLR 18 186 -281 1485 181 41 0 chr4 5895295 5895566 -178393096 - AluJo SINE Alu -28 284 3 1310 194 113 76 chr4 5895566 5895823 -178392839 + MLT1C LTR MaLR 186 467 0 1852 139 31 0 chr4 5896111 5896399 -178392263 + AluSq SINE Alu 1 297 -16 225 281 31 0 chr4 5896707 5896771 -178391891 + MIR SINE MIR 65 130 -78 1769 126 7 25 chr4 5896805 5897091 -178391571 + AluJb SINE Alu 7 287 -25 765 221 0 54 chr4 5897623 5897809 -178390853 + L1M3 LINE L1 5429 5596 -575 7168 102 18 11 chr4 5897814 5898814 -178389848 - LTR13 LTR ERVK 0 1007 1 2196 119 0 0 chr4 5898839 5899150 -178389512 + AluSx SINE Alu 1 311 -1 1383 93 31 0 chr4 5899188 5899382 -178389280 + AluSq SINE Alu 1 200 -113 25 51 0 0 chr4 5899389 5899428 -178389234 + AT_rich Low_complexity Low_complexity 1 39 0 1403 145 0 0 chr4 5899464 5899678 -178388984 - AluSg/x SINE Alu -16 296 83 451 226 0 0 chr4 5899883 5899967 -178388695 - PABL_B-int LTR ERV1 -449 6673 6590 1948 179 21 6 chr4 5899970 5900300 -178388362 + LTR32 LTR ERVL 14 348 -123 2128 112 3 0 chr4 5900303 5900599 -178388063 - AluSp SINE Alu -16 297 1 810 172 26 13 chr4 5900622 5900773 -178387889 + LTR32 LTR ERVL 319 471 0 690 335 37 41 chr4 5900839 5901352 -178387310 - PABL_B-int LTR ERV1 -598 6524 6014 2253 101 0 0 chr4 5901425 5901733 -178386929 + AluSg SINE Alu 1 308 -2 557 215 178 0 chr4 5901733 5901980 -178386682 + LTR23-int LTR ERV1 2089 2379 -2744 2656 202 88 102 chr4 5902000 5902036 -178386626 + LTR23-int LTR ERV1 3421 3456 -2490 2107 107 0 7 chr4 5902036 5902335 -178386327 + AluSx SINE Alu 1 297 -15 2656 202 88 102 chr4 5902335 5903303 -178385359 + LTR23-int LTR ERV1 3456 4410 -1536 1389 273 37 24 chr4 5903414 5903629 -178385033 + MLT1D LTR MaLR 35 246 -259 2253 116 0 0 chr4 5903629 5903939 -178384723 + AluSx SINE Alu 1 310 -2 1389 273 37 24 chr4 5903939 5904188 -178384474 + MLT1D LTR MaLR 246 505 0 655 295 127 45 chr4 5904188 5904650 -178384012 - MLT1J LTR MaLR -7 504 5 2012 130 0 13 chr4 5904891 5905247 -178383415 - AluSx SINE Alu 0 352 1 1614 127 15 8 chr4 5905617 5905876 -178382786 - MER2 DNA MER2_type -63 282 22 1037 291 158 38 chr4 5905878 5907026 -178381636 + L2 LINE L2 2006 3308 -5 225 250 19 0 chr4 5907026 5907078 -178381584 + GA-rich Low_complexity Low_complexity 1 53 0 1542 246 99 43 chr4 5907130 5907643 -178381019 + MLT1H1 LTR MaLR 14 555 0 281 265 20 20 chr4 5907644 5907746 -178380916 + L2 LINE L2 2291 2392 -922 1392 193 51 21 chr4 5907845 5908183 -178380479 + L1MB3 LINE L1 5829 6181 -2 21 26 0 26 chr4 5909013 5909030 -178379632 + AT_rich Low_complexity Low_complexity 1 17 -21 2111 122 0 3 chr4 5909030 5909317 -178379345 + AluSx SINE Alu 1 286 -26 21 26 0 26 chr4 5909317 5909338 -178379324 + AT_rich Low_complexity Low_complexity 17 38 0 237 284 95 14 chr4 5909475 5909549 -178379113 + L2 LINE L2 3188 3267 -5 326 302 93 61 chr4 5910040 5910467 -178378195 + L2 LINE L2 2553 3008 -264 241 105 0 0 chr4 5910555 5910593 -178378069 + MLT1J1 LTR MaLR 71 108 -338 412 331 49 23 chr4 5910613 5910879 -178377783 + MLT1J LTR MaLR 237 509 -2 324 298 65 24 chr4 5910998 5911122 -178377540 + L2 LINE L2 3136 3264 -8 2274 154 16 34 chr4 5911203 5911266 -178377396 + L1PA16 LINE L1 5724 5787 -379 1936 134 10 58 chr4 5911266 5911394 -178377268 + AluJo SINE Alu 6 139 -173 2226 108 0 17 chr4 5911394 5911689 -178376973 + AluSq SINE Alu 1 290 -23 1936 134 10 58 chr4 5911689 5911873 -178376789 + AluJo SINE Alu 139 303 -9 2274 154 16 34 chr4 5911873 5912257 -178376405 + L1PA16 LINE L1 5787 6163 -3 191 88 29 0 chr4 5913495 5913529 -178375133 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 464 283 7 0 chr4 5913548 5913693 -178374969 + L1ME4a LINE L1 5965 6110 -11 2264 122 3 0 chr4 5914033 5914344 -178374318 + AluSx SINE Alu 1 312 0 2180 126 27 36 chr4 5914738 5915103 -178373559 - THE1B LTR MaLR 0 364 3 218 318 148 34 chr4 5915869 5915921 -178372741 - MIR SINE MIR -6 256 211 1591 154 80 50 chr4 5915921 5916285 -178372377 + THE1C LTR MaLR 1 375 0 218 318 148 34 chr4 5916285 5916408 -178372254 - MIR SINE MIR -51 211 61 2345 101 55 71 chr4 5916960 5917017 -178371645 + MSTC LTR MaLR 1 57 -371 832 139 16 0 chr4 5917017 5917146 -178371516 + FLAM_C SINE Alu 3 133 0 2345 101 55 71 chr4 5917146 5917523 -178371139 + MSTC LTR MaLR 57 428 0 871 196 15 35 chr4 5917819 5918018 -178370644 + MLT1D LTR MaLR 41 235 -270 208 250 18 18 chr4 5918067 5918123 -178370539 - L2 LINE L2 -97 3216 3161 236 130 22 0 chr4 5918452 5918498 -178370164 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 2092 116 0 75 chr4 5918680 5919015 -178369647 - AluSx SINE Alu -2 310 1 2347 113 0 10 chr4 5919120 5919430 -178369232 - AluSx SINE Alu -5 307 1 688 138 9 0 chr4 5919443 5919552 -178369110 - AluJb SINE Alu -12 300 191 225 336 34 48 chr4 5919692 5919839 -178368823 - MER5A DNA MER1_type -28 161 6 269 301 32 0 chr4 5919888 5919981 -178368681 - MER5A DNA MER1_type -84 105 10 1974 121 69 0 chr4 5920043 5920333 -178368329 - AluSg SINE Alu 0 310 1 263 167 0 0 chr4 5920349 5920391 -178368271 - 5S rRNA rRNA -79 42 1 373 213 56 9 chr4 5920470 5920578 -178368084 - MIR SINE MIR -107 155 43 1911 67 14 25 chr4 5920690 5920973 -178367689 - L1PA7 LINE L1 -1 6153 5874 516 275 24 35 chr4 5920974 5921172 -178367490 - MIR SINE MIR -62 146 2 900 238 67 18 chr4 5921206 5921488 -178367174 - MLT1C LTR MaLR 0 467 172 841 152 22 0 chr4 5921537 5921675 -178366987 - AluJo SINE Alu -171 141 1 2308 99 3 0 chr4 5921687 5921979 -178366683 - AluSx SINE Alu -19 293 1 1090 99 0 0 chr4 5922021 5922183 -178366479 + L1PB2 LINE L1 5990 6151 0 482 287 78 62 chr4 5922376 5922634 -178366028 + L1ME LINE L1 5514 5775 -346 996 179 25 0 chr4 5922837 5923033 -178365629 + LTR48B LTR ERV1 1 201 -443 1703 124 24 3 chr4 5923034 5923325 -178365337 - LTR23 LTR ERV1 0 437 141 2149 115 0 0 chr4 5923328 5923607 -178365055 - AluSg SINE Alu -1 309 31 5380 61 103 0 chr4 5923607 5924356 -178364306 - LTR12 LTR ERV1 0 826 1 249 88 0 0 chr4 5924356 5924390 -178364272 - AluSg SINE Alu -266 34 1 569 184 82 54 chr4 5924393 5924540 -178364122 - LTR23 LTR ERV1 -286 151 1 495 216 9 26 chr4 5924661 5924777 -178363885 - LTR23-int LTR ERV1 -223 4900 4787 5128 147 28 14 chr4 5924791 5925805 -178362857 - LTR49-int LTR ERV1 -478 6120 4608 2608 41 0 0 chr4 5925811 5926104 -178362558 + AluY SINE Alu 1 293 -18 1421 113 5 0 chr4 5926205 5926391 -178362271 - AluSg SINE Alu -123 187 1 832 209 83 7 chr4 5926392 5926850 -178361812 + L1MA9 LINE L1 5661 6183 0 2161 209 36 53 chr4 5926873 5926889 -178361773 - MER92B LTR ERV1 -4 632 617 2443 82 7 0 chr4 5926889 5927183 -178361479 + AluSq SINE Alu 1 296 -17 2161 209 36 53 chr4 5927183 5927808 -178360854 - MER92B LTR ERV1 -19 617 2 202 270 11 34 chr4 5927921 5928010 -178360652 - L2 LINE L2 -188 3084 2998 323 183 11 75 chr4 5928115 5928208 -178360454 - LTR33A LTR ERVL -11 512 426 308 237 67 30 chr4 5929461 5929596 -178359066 - MER65B LTR ERV1 -391 140 1 267 236 28 0 chr4 5929674 5929746 -178358916 + MIR SINE MIR 111 184 -78 229 237 75 32 chr4 5929873 5929966 -178358696 + L2 LINE L2 3136 3232 -40 2370 99 0 7 chr4 5930250 5930554 -178358108 + AluSx SINE Alu 1 302 -10 450 143 48 0 chr4 5930748 5930832 -178357830 - AluS SINE Alu 0 309 222 939 266 41 29 chr4 5981312 5981900 -178306762 + L1M4 LINE L1 1100 1710 -4832 1166 235 65 0 chr4 5982019 5982279 -178306383 - MLT1-int LTR MaLR -139 1232 956 2387 222 4 6 chr4 5982675 5983152 -178305510 - MLT1-int LTR MaLR -1073 662 187 694 216 14 7 chr4 5984081 5984220 -178304442 + MLT1A1 LTR MaLR 225 364 -1 631 142 53 18 chr4 5984222 5984335 -178304327 + MLT1A1-int LTR MaLR 2 118 -1617 2174 137 0 15 chr4 5984613 5984955 -178303707 - MER1B DNA MER1_type 0 337 1 536 247 180 10 chr4 5985033 5985333 -178303329 - L1MEc LINE L1 -4418 1978 1628 1082 106 0 73 chr4 5985345 5985524 -178303138 + MLT2A2 LTR ERVL 1 166 -287 896 122 0 0 chr4 5985525 5985640 -178303022 - AluSq/x SINE Alu -198 115 1 283 241 13 25 chr4 5985642 5985721 -178302941 + LTR52 LTR ERVL 16 93 -328 * 704 175 0 17 chr4 5985717 5985837 -178302825 - MLT1A1 LTR MaLR -247 118 1 6897 74 26 5 chr4 5986687 5987648 -178301014 - L1PA11 LINE L1 -1 6173 5209 21 71 0 0 chr4 5987747 5987789 -178300873 + AT_rich Low_complexity Low_complexity 1 42 0 526 270 10 99 chr4 5987801 5988094 -178300568 - L2 LINE L2 -161 3152 2886 363 296 0 74 chr4 5988098 5988260 -178300402 - L2 LINE L2 -985 2329 2180 3861 53 2 0 chr4 5988623 5989096 -178299566 + L1PA8 LINE L1 5467 5940 -232 410 147 29 0 chr4 5989196 5989264 -178299398 - MLT1A2 LTR MaLR -304 70 1 363 250 31 55 chr4 5989267 5989395 -178299267 + MIR3 SINE MIR 69 193 -15 253 29 0 0 chr4 5989683 5989717 -178298945 - MIR SINE MIR -122 140 107 353 290 28 7 chr4 5989964 5990109 -178298553 + MIR3 SINE MIR 13 160 -48 211 254 0 0 chr4 5990170 5990225 -178298437 - MER5A DNA MER1_type -105 84 30 181 49 0 73 chr4 5990325 5990366 -178298296 + (CAAAAA)n Simple_repeat Simple_repeat 6 43 0 333 0 0 0 chr4 5990757 5990794 -178297868 + (CA)n Simple_repeat Simple_repeat 2 38 0 371 291 39 8 chr4 5991008 5991135 -178297527 - MIR SINE MIR -73 189 59 3121 201 55 16 chr4 5991165 5991842 -178296820 - L1MD2 LINE L1 -27 6332 5630 825 248 35 13 chr4 5991920 5992150 -178296512 - MIR SINE MIR -18 244 10 1362 306 15 11 chr4 5992179 5992647 -178296015 - L1ME3A LINE L1 -5 6165 5696 312 287 37 0 chr4 5992656 5992764 -178295898 - L1M4 LINE L1 -3289 2857 2746 1670 166 54 11 chr4 5992764 5993042 -178295620 + AluJb SINE Alu 1 290 -22 2380 107 0 0 chr4 5994357 5994666 -178293996 - AluSq SINE Alu -4 309 1 2322 99 16 0 chr4 5994674 5994977 -178293685 - AluSq SINE Alu -5 308 1 971 155 6 11 chr4 5994981 5995155 -178293507 - MLT1B LTR MaLR -217 173 1 205 62 94 0 chr4 5995283 5995315 -178293347 + L2 LINE L2 3264 3298 -15 381 282 0 9 chr4 5995389 5995499 -178293163 - MIR SINE MIR -83 125 17 236 260 78 0 chr4 5996333 5996410 -178292252 - MIR SINE MIR -72 190 108 480 257 11 73 chr4 5996493 5996561 -178292101 + MIR SINE MIR 78 149 -113 3184 102 42 86 chr4 5996561 5997152 -178291510 + MER34B LTR ERV1 1 565 0 480 257 11 73 chr4 5997152 5997262 -178291400 + MIR SINE MIR 149 245 -17 248 281 35 26 chr4 5997333 5997447 -178291215 - LTR67 LTR ERVL -17 540 426 1932 195 88 27 chr4 5997585 5998061 -178290601 - MLT1D LTR MaLR 0 505 1 887 224 0 0 chr4 5998106 5998276 -178290386 - MER5A DNA MER1_type -19 170 1 2243 224 38 19 chr4 6000236 6000763 -178287899 - MLT1F LTR MaLR 0 542 6 189 361 0 0 chr4 6001737 6001856 -178286806 + L2 LINE L2 2231 2349 -965 2675 152 16 68 chr4 6001886 6001984 -178286678 + L1MB8 LINE L1 5619 5721 -457 2020 141 27 0 chr4 6001984 6002281 -178286381 - AluSx SINE Alu -7 305 1 2675 152 16 68 chr4 6002281 6002755 -178285907 + L1MB8 LINE L1 5721 6161 -17 2132 126 20 0 chr4 6002790 6003091 -178285571 + AluSq SINE Alu 1 307 -6 581 180 0 0 chr4 6003127 6003227 -178285435 + L1M4 LINE L1 5616 5715 -463 349 293 30 30 chr4 6003346 6003479 -178285183 - MIR3 SINE MIR -26 182 50 375 297 109 30 chr4 6004132 6004297 -178284365 - MER91A DNA MER1_type -18 178 1 1738 80 0 24 chr4 6004561 6004810 -178283852 + L1PA8 LINE L1 5930 6172 0 438 20 0 0 chr4 6005333 6005384 -178283278 + (TG)n Simple_repeat Simple_repeat 1 51 0 1042 141 28 89 chr4 6005496 6005709 -178282953 - MER20 DNA MER1_type 0 219 20 280 350 39 56 chr4 6008166 6008346 -178280316 - L2 LINE L2 -2 3270 3094 25 31 0 0 chr4 6008781 6008813 -178279849 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr4 6010321 6010349 -178278313 + AT_rich Low_complexity Low_complexity 1 28 0 2428 82 7 0 chr4 6011385 6011690 -178276972 - AluSg SINE Alu -3 307 1 22 0 0 0 chr4 6016259 6016281 -178272381 + AT_rich Low_complexity Low_complexity 1 22 0 464 188 354 11 chr4 6016593 6016774 -178271888 - MIR SINE MIR -10 252 10 515 295 181 54 chr4 6016854 6017451 -178271211 + L2 LINE L2 2077 2749 -565 355 391 31 65 chr4 6017469 6017791 -178270871 + L2 LINE L2 2962 3272 0 648 321 66 45 chr4 6017913 6018430 -178270232 + MLT1K LTR MaLR 40 567 -21 225 0 0 0 chr4 6018566 6018591 -178270071 + (GAAAA)n Simple_repeat Simple_repeat 4 28 0 555 260 103 18 chr4 6018767 6018990 -178269672 + L3b LINE CR1 1161 1402 -181 328 296 51 0 chr4 6019113 6019211 -178269451 - L2 LINE L2 -1 3271 3169 771 179 8 22 chr4 6020301 6020435 -178268227 + FLAM_A SINE Alu 1 132 -1 423 187 0 0 chr4 6021387 6021494 -178267168 + (TA)n Simple_repeat Simple_repeat 1 107 0 458 227 9 9 chr4 6021769 6021879 -178266783 - LTR33 LTR ERVL -343 178 69 2200 137 38 11 chr4 6021879 6022252 -178266410 + MSTB LTR MaLR 44 426 0 462 259 83 19 chr4 6022288 6022493 -178266169 + LTR16A LTR ERVL 59 276 -174 2196 89 31 0 chr4 6022694 6022987 -178265675 + AluY SINE Alu 1 302 -9 235 244 110 37 chr4 6023374 6023456 -178265206 + MIR SINE MIR 175 262 0 412 226 124 0 chr4 6023760 6023897 -178264765 - L1ME4a LINE L1 0 6121 5968 31 0 0 0 chr4 6023988 6024019 -178264643 + AT_rich Low_complexity Low_complexity 1 31 0 1608 180 0 4 chr4 6024263 6024519 -178264143 - AluSx SINE Alu -57 255 1 334 272 123 31 chr4 6024569 6024731 -178263931 - L1 LINE L1 -1088 5058 4882 216 0 0 0 chr4 6024765 6024789 -178263873 + (CA)n Simple_repeat Simple_repeat 2 25 0 322 334 127 23 chr4 6024833 6025132 -178263530 - L1 LINE L1 -1517 4629 4300 324 338 44 19 chr4 6025546 6025706 -178262956 + L1MC4a LINE L1 5708 5871 -1937 181 73 24 24 chr4 6026056 6026097 -178262565 + (CAAAAA)n Simple_repeat Simple_repeat 3 43 0 494 270 0 0 chr4 6026221 6026336 -178262326 - MIR3 SINE MIR -28 180 66 189 329 14 0 chr4 6027069 6027139 -178261523 + MIR SINE MIR 180 250 -12 917 216 72 0 chr4 6028338 6028546 -178260116 - MER58A DNA MER1_type -1 223 1 205 191 143 0 chr4 6028851 6028893 -178259769 + L2 LINE L2 3219 3266 -6 203 203 0 109 chr4 6029789 6029853 -178258809 - MIR3 SINE MIR 0 208 152 1140 250 192 5 chr4 6029884 6030342 -178258320 - L2 LINE L2 0 3313 2770 185 254 164 15 chr4 6031525 6031592 -178257070 - L3 LINE CR1 -132 1445 1369 581 311 77 56 chr4 6031599 6031677 -178256985 - L3 LINE CR1 -322 1255 1180 2360 73 0 13 chr4 6031677 6031977 -178256685 - AluSc SINE Alu -13 296 1 581 311 77 56 chr4 6031977 6032274 -178256388 - L3 LINE CR1 -397 1180 872 260 309 147 29 chr4 6032471 6032675 -178255987 - L3 LINE CR1 -1089 488 261 490 326 70 11 chr4 6032920 6033107 -178255555 + MIR SINE MIR 47 244 -18 600 264 106 22 chr4 6034287 6034514 -178254148 - MIR SINE MIR 0 262 17 418 259 280 16 chr4 6035177 6035370 -178253292 - MIR SINE MIR -1 261 18 197 250 21 0 chr4 6035669 6035717 -178252945 + L2 LINE L2 3186 3234 -38 972 104 0 15 chr4 6037206 6037364 -178251298 - FLAM_C SINE Alu 0 156 1 313 300 70 0 chr4 6042064 6042164 -178246498 + MIR3 SINE MIR 78 184 -24 261 284 74 0 chr4 6042318 6042399 -178246263 - MIR SINE MIR -71 191 105 293 191 0 0 chr4 6042796 6042843 -178245819 - MER5B DNA MER1_type -131 47 1 789 227 104 5 chr4 6042861 6043081 -178245581 + MIR SINE MIR 13 254 -8 1232 179 25 68 chr4 6043193 6043472 -178245190 - AluJo SINE Alu -2 310 44 188 259 138 0 chr4 6043939 6043997 -178244665 - MIR3 SINE MIR -52 156 91 703 264 24 81 chr4 6045305 6045551 -178243111 - MIR SINE MIR -29 233 2 345 298 12 0 chr4 6046257 6046341 -178242321 + L2 LINE L2 3229 3313 0 211 353 35 0 chr4 6046653 6046738 -178241924 + L3b LINE CR1 1422 1509 -74 1646 175 42 18 chr4 6048083 6048414 -178240248 - MER2 DNA MER2_type -3 341 3 550 240 56 56 chr4 6048430 6048568 -178240094 - L1ME4a LINE L1 -198 5923 5783 2154 116 0 7 chr4 6048568 6048878 -178239784 + AluSq SINE Alu 1 308 -5 550 240 56 56 chr4 6048878 6048972 -178239690 - L1ME4a LINE L1 -337 5784 5691 420 221 0 12 chr4 6049327 6049413 -178239249 + MIR3 SINE MIR 117 201 -7 180 258 0 65 chr4 6050425 6050487 -178238175 - L2 LINE L2 -60 3212 3155 361 300 61 40 chr4 6050487 6050764 -178237898 + Charlie2 DNA MER1_type 1 283 -2499 2713 224 76 35 chr4 6050792 6051388 -178237274 + Charlie2 DNA MER1_type 1852 2505 -357 563 95 21 0 chr4 6051388 6051483 -178237179 + L1PB2 LINE L1 6053 6149 -2 2713 224 76 35 chr4 6051483 6051857 -178236805 + Charlie2 DNA MER1_type 2505 2862 0 189 333 49 31 chr4 6051951 6052134 -178236528 - L2 LINE L2 -313 2959 2701 381 259 45 18 chr4 6052194 6052306 -178236356 - L2 LINE L2 0 3272 3158 1262 187 68 3 chr4 6052352 6052702 -178235960 + L1MD2 LINE L1 5211 5577 -751 1258 126 40 20 chr4 6052723 6052970 -178235692 - L1MB8 LINE L1 -5 6173 5922 2026 140 35 85 chr4 6052975 6053314 -178235348 - MER47B DNA MER2_type -1910 413 99 1950 124 16 29 chr4 6053314 6053621 -178235041 + AluSx SINE Alu 5 307 -5 2026 140 35 85 chr4 6053621 6053716 -178234946 - MER47B DNA MER2_type -2224 99 1 1249 137 39 13 chr4 6053716 6053950 -178234712 - L1MB8 LINE L1 -261 5923 5684 * 1432 234 63 0 chr4 6053948 6054415 -178234247 + L1MD2 LINE L1 5579 6080 -86 1357 105 79 31 chr4 6054444 6054761 -178233901 - Tigger7 DNA MER2_type -34 2553 1 437 198 143 0 chr4 6054977 6055068 -178233594 + Tigger5 DNA MER2_type 132 235 -2088 405 265 108 24 chr4 6055940 6056106 -178232556 - MIR3 SINE MIR -6 202 23 386 300 27 0 chr4 6056629 6056739 -178231923 + MLT1K LTR MaLR 473 585 -3 291 323 168 0 chr4 6056740 6056901 -178231761 - MIR SINE MIR -49 213 26 406 257 13 99 chr4 6056988 6057140 -178231522 + MIR3 SINE MIR 6 144 -64 363 279 112 39 chr4 6057228 6057407 -178231255 + MER117 DNA MER1_type 6 197 0 360 241 117 19 chr4 6057725 6057859 -178230803 - MIR SINE MIR -65 143 30 385 299 28 0 chr4 6058708 6058815 -178229847 - L3 LINE CR1 -41 1536 1427 323 276 103 35 chr4 6059227 6059343 -178229319 - MIR SINE MIR -68 140 17 327 351 87 34 chr4 6059443 6059708 -178228954 + L2 LINE L2 2872 3150 -122 653 195 113 1 chr4 6059914 6060073 -178228589 + MER69A DNA AcHobo 1 177 0 242 338 42 0 chr4 6060080 6060151 -178228511 - L2 LINE L2 -65 3207 3134 296 174 279 0 chr4 6060157 6060243 -178228419 - L2 LINE L2 0 3272 3163 208 338 0 0 chr4 6060519 6060590 -178228072 - L3 LINE CR1 -111 1466 1396 301 354 76 0 chr4 6061563 6061707 -178226955 + MIR SINE MIR 108 262 0 946 133 23 12 chr4 6061959 6062132 -178226530 - FAM SINE Alu 0 175 1 628 174 174 31 chr4 6062250 6062411 -178226251 + Charlie1b DNA MER1_type 78 261 -262 544 184 72 0 chr4 6062409 6062534 -178226128 + Charlie1b DNA MER1_type 390 523 0 * 2082 41 96 4 chr4 6062608 6062878 -178225784 - AluY SINE Alu -16 295 1 538 165 44 0 chr4 6063629 6063720 -178224942 - FAM SINE Alu -90 95 1 2489 146 2 15 chr4 6063828 6064226 -178224436 + Tigger2a DNA MER2_type 1 393 -41 893 206 158 13 chr4 6064333 6064480 -178224182 + MLT1I LTR MaLR 146 270 -139 3692 58 13 2 chr4 6064480 6064928 -178223734 - MLT2A2 LTR ERVL 0 453 1 893 206 158 13 chr4 6064928 6065008 -178223654 + MLT1I LTR MaLR 270 406 -3 183 129 0 0 chr4 6065398 6065429 -178223233 + (T)n Simple_repeat Simple_repeat 1 31 0 2205 105 0 31 chr4 6065431 6065754 -178222908 - AluSq SINE Alu 0 313 1 2315 120 35 32 chr4 6065904 6066278 -178222384 + THE1C LTR MaLR 1 375 0 1406 239 163 14 chr4 6066400 6066836 -178221826 + MLT1D LTR MaLR 1 501 -4 1850 128 17 13 chr4 6067374 6067672 -178220990 + AluSx SINE Alu 2 300 -12 351 0 0 0 chr4 6068033 6068072 -178220590 + (TG)n Simple_repeat Simple_repeat 1 39 0 463 180 128 10 chr4 6068813 6068934 -178219728 + MIR SINE MIR 28 149 -65 2882 71 3 0 chr4 6069336 6069690 -178218972 + THE1A LTR MaLR 1 355 0 11679 94 17 2 chr4 6069690 6071247 -178217415 + THE1A-int LTR MaLR 1 1580 0 2732 72 20 0 chr4 6071247 6071595 -178217067 + THE1A LTR MaLR 1 355 0 1975 205 35 41 chr4 6071771 6072279 -178216383 - MLT1D LTR MaLR 0 505 1 515 260 127 20 chr4 6073171 6073321 -178215341 - MIR3 SINE MIR -5 203 38 287 246 134 42 chr4 6073500 6073642 -178215020 - L2 LINE L2 -2 3270 3116 330 277 178 50 chr4 6073845 6073988 -178214674 + MIR SINE MIR 7 185 -77 2208 123 33 41 chr4 6073988 6074355 -178214307 - THE1B LTR MaLR 0 364 1 330 277 178 50 chr4 6074355 6074413 -178214249 + MIR SINE MIR 185 234 -28 831 251 58 14 chr4 6074693 6074916 -178213746 + L3b LINE CR1 1192 1424 -159 571 291 79 25 chr4 6076573 6076776 -178211886 - MIR SINE MIR 0 262 49 2105 96 0 20 chr4 6076777 6077078 -178211584 + AluSg SINE Alu 1 295 -15 2026 114 7 0 chr4 6077091 6077400 -178211262 + AluSx SINE Alu 2 312 0 809 161 0 15 chr4 6078359 6078496 -178210166 - FRAM SINE Alu -22 154 20 220 249 129 41 chr4 6078741 6078934 -178209728 + MIR SINE MIR 8 224 -38 234 363 108 0 chr4 6078958 6079060 -178209602 - L2 LINE L2 -1 3312 3200 219 69 0 0 chr4 6079558 6079587 -178209075 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 218 268 138 65 chr4 6079587 6079710 -178208952 - L2 LINE L2 -13 3300 3169 201 39 0 0 chr4 6079741 6079767 -178208895 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 251 193 53 0 chr4 6079859 6079916 -178208746 + CT-rich Low_complexity Low_complexity 2 61 0 2531 157 29 5 chr4 6080026 6080441 -178208221 - MER61B LTR ERV1 0 425 1 184 403 17 0 chr4 6080489 6080608 -178208054 - L3 LINE CR1 -72 1505 1385 * 208 351 44 18 chr4 6080602 6080619 -178208043 - L2 LINE L2 -1 3271 3256 1581 146 3 57 chr4 6080619 6080934 -178207728 - AluJo SINE Alu -14 298 1 208 351 44 18 chr4 6080934 6081030 -178207632 - L2 LINE L2 -16 3256 3155 666 304 111 33 chr4 6081114 6081476 -178207186 - L3 LINE CR1 -455 1122 733 204 40 0 0 chr4 6081511 6081536 -178207126 + (TG)n Simple_repeat Simple_repeat 2 26 0 1595 191 11 46 chr4 6081998 6082364 -178206298 - L1PA16 LINE L1 0 6166 5814 2100 63 44 0 chr4 6082603 6082873 -178205789 + AluY SINE Alu 1 282 -29 270 0 0 0 chr4 6082877 6082907 -178205755 + (TAA)n Simple_repeat Simple_repeat 2 31 0 301 282 68 8 chr4 6083227 6083344 -178205318 + MIR SINE MIR 139 262 0 347 288 64 52 chr4 6083401 6083758 -178204904 - MLT1J LTR MaLR -56 455 110 333 258 161 97 chr4 6084037 6084386 -178204276 - MLT1I LTR MaLR -21 388 18 213 227 18 172 chr4 6084404 6084567 -178204095 + L2 LINE L2 3054 3191 -81 2138 147 21 0 chr4 6085031 6085364 -178203298 + L1MC1 LINE L1 5514 5853 -480 391 198 207 18 chr4 6085382 6085493 -178203169 + MIR SINE MIR 73 204 -58 633 281 40 12 chr4 6085495 6085858 -178202804 + LTR33 LTR ERVL 1 406 -115 234 0 0 0 chr4 6085920 6085946 -178202716 + (A)n Simple_repeat Simple_repeat 1 26 0 2962 128 27 2 chr4 6085947 6086431 -178202231 + L1MC2 LINE L1 5839 6334 -10 344 331 31 8 chr4 6086503 6086633 -178202029 - L2 LINE L2 -220 3052 2920 * 353 292 62 0 chr4 6086626 6086722 -178201940 + L2 LINE L2 3212 3313 0 2144 105 3 0 chr4 6086801 6087097 -178201565 - AluSp SINE Alu -16 297 1 562 275 40 29 chr4 6087730 6087967 -178200695 - MIR SINE MIR -15 247 2 256 297 18 54 chr4 6088219 6088330 -178200332 + MER67B LTR ERV1 55 161 -500 225 0 0 0 chr4 6088608 6088633 -178200029 + (TG)n Simple_repeat Simple_repeat 2 26 0 415 236 0 0 chr4 6088654 6088755 -178199907 + MIR SINE MIR 52 153 -55 778 294 124 13 chr4 6088846 6088956 -178199706 - L2 LINE L2 -39 3274 3178 2345 107 48 25 chr4 6088956 6089312 -178199350 - THE1B LTR MaLR 0 364 1 778 294 124 13 chr4 6089312 6089672 -178198990 - L2 LINE L2 -135 3178 2738 357 118 0 0 chr4 6089865 6089916 -178198746 + MSTA LTR MaLR 2 52 -376 2149 253 90 13 chr4 6090010 6091210 -178197452 - L1MC4 LINE L1 -139 7903 6459 1767 128 134 15 chr4 6091493 6091828 -178196834 + THE1C LTR MaLR 1 375 0 228 200 18 0 chr4 6092149 6092204 -178196458 + L2 LINE L2 2918 2973 -299 530 248 32 16 chr4 6092392 6092517 -178196145 - L2 LINE L2 -1 3271 3145 204 273 0 0 chr4 6092670 6092714 -178195948 - L2 LINE L2 -93 3179 3136 446 301 133 18 chr4 6092833 6093172 -178195490 + LTR16A1 LTR ERVL 33 410 -47 2847 78 16 3 chr4 6093300 6093670 -178194992 + THE1C LTR MaLR 1 375 0 347 0 23 0 chr4 6093921 6093964 -178194698 + (CA)n Simple_repeat Simple_repeat 2 45 0 270 0 0 0 chr4 6094026 6094056 -178194606 + (CA)n Simple_repeat Simple_repeat 2 31 0 211 240 73 62 chr4 6094812 6094908 -178193754 - MIR SINE MIR -33 229 133 508 162 20 10 chr4 6095516 6095615 -178193047 - MER96B DNA MER1_type? -286 131 32 289 231 37 65 chr4 6095665 6095773 -178192889 - MIR SINE MIR -78 184 80 1446 187 38 29 chr4 6096571 6096887 -178191775 - MLT1A2 LTR MaLR 0 374 56 4483 188 12 21 chr4 6097007 6097894 -178190768 - L1MB5 LINE L1 -36 6138 5260 1657 179 0 28 chr4 6097960 6098279 -178190383 + AluJb SINE Alu 1 310 -2 329 115 33 0 chr4 6098279 6098333 -178190329 + GA-rich Low_complexity Low_complexity 6 64 0 698 266 0 12 chr4 6098382 6098551 -178190111 + MIR SINE MIR 96 262 0 376 195 114 57 chr4 6098634 6098833 -178189829 - MIR SINE MIR -3 259 44 545 289 27 11 chr4 6098840 6099027 -178189635 + LTR16A LTR ERVL 157 346 -104 350 265 12 0 chr4 6099076 6099159 -178189503 + MER81 DNA DNA 30 113 -1 25 51 0 0 chr4 6099988 6100027 -178188635 + AT_rich Low_complexity Low_complexity 1 39 0 1601 208 140 20 chr4 6100048 6100447 -178188215 - MLT2B1 LTR ERVL -71 449 3 1259 202 175 19 chr4 6100663 6101034 -178187628 + MLT1C LTR MaLR 6 434 -33 1954 109 26 32 chr4 6101034 6101345 -178187317 - THE1B LTR MaLR 0 364 56 4781 128 55 3 chr4 6101929 6102669 -178185993 + MER4E LTR ERV1 1 779 0 1650 163 7 0 chr4 6102919 6103189 -178185473 - AluJo SINE Alu -8 304 33 1460 253 48 27 chr4 6103859 6104146 -178184516 - MLT1C LTR MaLR 0 467 166 2034 118 0 6 chr4 6104146 6104459 -178184203 - AluSx SINE Alu -1 311 1 1460 253 48 27 chr4 6104459 6104613 -178184049 - MLT1C LTR MaLR -301 166 17 214 269 30 0 chr4 6104661 6104728 -178183934 + MIR SINE MIR 187 255 -7 326 232 0 14 chr4 6105202 6105271 -178183391 - L2 LINE L2 -4 3309 3242 617 282 70 37 chr4 6105315 6105556 -178183106 - MIR SINE MIR -10 252 4 215 261 94 58 chr4 6105614 6105752 -178182910 - L2 LINE L2 -174 3098 2956 1196 118 0 0 chr4 6106120 6106298 -178182364 + L1PA14 LINE L1 5984 6161 0 513 0 0 0 chr4 6106429 6106486 -178182176 + (TAA)n Simple_repeat Simple_repeat 3 59 0 1749 137 96 0 chr4 6106493 6106763 -178181899 + AluJo SINE Alu 3 298 -14 690 297 67 5 chr4 6106773 6106968 -178181694 - MIR SINE MIR -6 256 50 1448 215 93 9 chr4 6107068 6107412 -178181250 + MLT1A2 LTR MaLR 2 374 0 673 276 98 19 chr4 6107642 6107856 -178180806 + MIR SINE MIR 29 259 -3 183 80 0 0 chr4 6108629 6108654 -178180008 + (T)n Simple_repeat Simple_repeat 1 25 0 219 293 190 17 chr4 6109049 6109223 -178179439 + L2 LINE L2 3019 3222 -50 405 268 150 0 chr4 6109563 6109690 -178178972 + MIR SINE MIR 117 262 0 216 290 32 0 chr4 6110160 6110222 -178178440 - MIR SINE MIR -64 144 81 2295 110 13 0 chr4 6110293 6110594 -178178068 + AluSx SINE Alu 1 305 -7 647 277 66 31 chr4 6110718 6111036 -178177626 + L1MC4a LINE L1 5558 5886 -1922 210 369 29 0 chr4 6111275 6111378 -178177284 + MIR SINE MIR 66 171 -91 327 260 0 0 chr4 6111599 6111676 -178176986 - L2 LINE L2 -215 3057 2981 577 254 29 35 chr4 6111919 6111950 -178176712 - MIR SINE MIR -60 202 172 2297 105 0 7 chr4 6111950 6112276 -178176386 - AluSx SINE Alu 0 312 1 577 254 29 35 chr4 6112276 6112417 -178176245 - MIR SINE MIR -90 172 31 327 294 73 0 chr4 6112613 6112722 -178175940 - MIR SINE MIR -89 173 57 233 279 135 29 chr4 6112752 6112856 -178175806 - MIR SINE MIR -81 181 67 348 269 83 28 chr4 6113205 6113350 -178175312 - MIR SINE MIR -52 210 58 2351 98 3 0 chr4 6113650 6113955 -178174707 + AluY SINE Alu 1 306 -5 2456 76 3 13 chr4 6114028 6114343 -178174319 + AluSq SINE Alu 1 312 -1 1183 141 0 17 chr4 6114343 6114510 -178174152 + AluSg/x SINE Alu 133 298 -12 303 312 29 0 chr4 6115587 6115710 -178172952 - MIR SINE MIR -69 139 12 381 299 86 41 chr4 6115731 6115928 -178172734 + MIR SINE MIR 13 218 -44 1137 258 79 25 chr4 6115932 6116309 -178172353 - MLT1L LTR MaLR -4 611 205 2086 232 102 16 chr4 6116309 6116856 -178171806 - MLT1G1 LTR MaLR 0 595 2 1137 258 79 25 chr4 6116856 6116923 -178171739 - MLT1L LTR MaLR -410 205 143 2365 115 0 0 chr4 6117139 6117451 -178171211 - AluSx SINE Alu 0 312 1 297 167 0 0 chr4 6117817 6117871 -178170791 + (TG)n Simple_repeat Simple_repeat 1 54 0 389 312 12 58 chr4 6118115 6118288 -178170374 - MIR3 SINE MIR -4 204 40 * 593 261 43 68 chr4 6118287 6118521 -178170141 + MIR SINE MIR 6 233 -29 1974 138 0 10 chr4 6118529 6118833 -178169829 - MLT1A1 LTR MaLR 0 365 65 2064 101 0 8 chr4 6118836 6119103 -178169559 - AluSq SINE Alu -48 265 1 274 265 116 79 chr4 6119401 6119590 -178169072 - MLT1J LTR MaLR -6 505 310 850 249 121 55 chr4 6119706 6120225 -178168437 + MLT1G1 LTR MaLR 34 554 -1 227 227 0 30 chr4 6120227 6120293 -178168369 - MLT1J2 LTR MaLR -320 130 67 314 200 91 0 chr4 6120484 6120594 -178168068 - Charlie7 DNA MER1_type -40 2572 2453 822 231 7 0 chr4 6120595 6120742 -178167920 + FAM SINE Alu 2 149 -36 2197 138 52 6 chr4 6120744 6121092 -178167570 + THE1B LTR MaLR 1 364 0 180 191 0 0 chr4 6121121 6121137 -178167525 + (TAA)n Simple_repeat Simple_repeat 1 16 -26 1843 159 7 3 chr4 6121137 6121432 -178167230 + AluJb SINE Alu 1 296 -16 180 191 0 0 chr4 6121432 6121457 -178167205 + (TAA)n Simple_repeat Simple_repeat 15 42 0 192 77 0 0 chr4 6121712 6121738 -178166924 + (TC)n Simple_repeat Simple_repeat 2 27 0 620 266 107 64 chr4 6121755 6122073 -178166589 - Charlie7 DNA MER1_type -2058 554 202 2027 118 81 35 chr4 6122073 6122421 -178166241 - THE1B LTR MaLR 0 364 1 620 266 107 64 chr4 6122421 6122633 -178166029 - Charlie7 DNA MER1_type -2410 202 1 295 330 76 0 chr4 6122634 6122752 -178165910 + L2 LINE L2 3146 3272 0 1805 154 129 7 chr4 6123128 6123528 -178165134 - MLT1D LTR MaLR 0 467 26 1602 150 40 44 chr4 6123640 6123780 -178164882 - AluJo SINE Alu -39 273 133 2365 104 0 0 chr4 6123780 6124078 -178164584 - AluSx SINE Alu -14 298 1 1602 150 40 44 chr4 6124078 6124211 -178164451 - AluJo SINE Alu -179 133 1 299 250 0 0 chr4 6124222 6124294 -178164368 - MER81 DNA DNA -42 72 1 561 286 85 5 chr4 6124299 6124488 -178164174 + MIR SINE MIR 2 205 -57 263 241 51 25 chr4 6125490 6125569 -178163093 - L2 LINE L2 -46 3226 3146 314 224 90 75 chr4 6125785 6125919 -178162743 + L2 LINE L2 2951 3086 -186 4081 197 21 52 chr4 6125967 6126483 -178162179 - L1MB7 LINE L1 0 6184 5653 2719 139 27 2 chr4 6126483 6126894 -178161768 + MSTB LTR MaLR 5 425 -1 4081 197 21 52 chr4 6126894 6127251 -178161411 - L1MB7 LINE L1 -531 5653 5286 2210 108 3 0 chr4 6127251 6127546 -178161116 - AluSp SINE Alu -17 296 1 4081 197 21 52 chr4 6127546 6127979 -178160683 - L1MB7 LINE L1 -898 5286 4841 4364 65 0 7 chr4 6127979 6128533 -178160129 + L1PA13 LINE L1 5612 6161 -2 4081 197 21 52 chr4 6128533 6128716 -178159946 - L1MB7 LINE L1 -1343 4841 4654 1221 158 83 0 chr4 6128716 6128957 -178159705 - L1MB3 LINE L1 0 6183 5923 4081 197 21 52 chr4 6128957 6129344 -178159318 - L1MB7 LINE L1 -1530 4654 4364 649 203 209 89 chr4 6129410 6129725 -178158937 + MLT1J1 LTR MaLR 74 427 -23 1943 174 34 29 chr4 6130100 6130647 -178158015 + MLT2A2 LTR ERVL 4 554 0 289 243 27 14 chr4 6130647 6130721 -178157941 - MIR SINE MIR -55 153 88 243 304 89 60 chr4 6130815 6130983 -178157679 + L2 LINE L2 2916 3088 -184 440 315 14 21 chr4 6131077 6131220 -178157442 + MIR SINE MIR 118 259 -3 182 258 54 65 chr4 6131241 6131334 -178157328 + L2 LINE L2 3222 3313 0 1982 153 3 7 chr4 6131348 6131648 -178157014 + AluJb SINE Alu 3 301 -11 2445 75 0 3 chr4 6131942 6132248 -178156414 + AluY SINE Alu 1 305 -6 2186 123 0 37 chr4 6132644 6132680 -178155982 - AluSq SINE Alu 0 313 277 180 0 0 0 chr4 6132680 6132700 -178155962 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2186 123 0 37 chr4 6132700 6132988 -178155674 - AluSq SINE Alu -36 277 1 2411 36 11 0 chr4 6133376 6133652 -178155010 - AluY SINE Alu -2 309 31 1170 291 71 14 chr4 6133751 6134187 -178154475 - L2 LINE L2 0 3313 2853 272 325 73 14 chr4 6134313 6134455 -178154207 + MIR SINE MIR 1 147 -62 2468 99 0 0 chr4 6134485 6134797 -178153865 + AluSx SINE Alu 1 312 0 271 271 26 56 chr4 6135029 6135180 -178153482 - MIR SINE MIR -67 141 8 219 203 0 68 chr4 6135258 6135317 -178153345 + L2 LINE L2 3136 3190 -82 713 242 152 51 chr4 6135448 6135857 -178152805 - MLT1J2 LTR MaLR 0 450 1 1436 111 20 0 chr4 6136296 6136495 -178152167 + AluSq SINE Alu 1 203 -110 4142 139 45 33 chr4 6136536 6136839 -178151823 + L1MB3 LINE L1 5317 5615 -568 2132 146 36 33 chr4 6136839 6137202 -178151460 - THE1B LTR MaLR 0 364 1 4142 139 45 33 chr4 6137202 6137713 -178150949 + L1MB3 LINE L1 5615 6141 -42 836 124 25 8 chr4 6137724 6137845 -178150817 + AluJb SINE Alu 12 134 -178 2504 72 0 0 chr4 6137846 6138151 -178150511 + AluY SINE Alu 1 305 -6 21 0 0 0 chr4 6138356 6138377 -178150285 + AT_rich Low_complexity Low_complexity 1 21 0 2232 109 3 0 chr4 6138476 6138770 -178149892 + AluSp SINE Alu 1 295 -18 1336 167 31 108 chr4 6138891 6139025 -178149637 + MLT1A1 LTR MaLR 2 145 -220 2332 140 89 0 chr4 6139025 6139418 -178149244 - MSTA LTR MaLR 0 428 1 1336 167 31 108 chr4 6139418 6139673 -178148989 + MLT1A1 LTR MaLR 145 361 -4 223 294 168 25 chr4 6139843 6139962 -178148700 + MIR SINE MIR 29 164 -98 208 216 0 0 chr4 6139959 6139996 -178148666 + MIR SINE MIR 110 146 -62 * 378 200 56 11 chr4 6140003 6140093 -178148569 + MIR SINE MIR 99 192 -70 194 269 54 11 chr4 6140635 6140728 -178147934 - MIR3 SINE MIR -19 189 93 912 195 71 95 chr4 6140880 6141218 -178147444 + MLT1J LTR MaLR 45 374 -137 310 310 163 8 chr4 6141243 6141372 -178147290 - MIR SINE MIR -95 167 19 540 263 176 66 chr4 6141666 6141768 -178146894 + MLT1G1 LTR MaLR 3 92 -503 2193 125 3 0 chr4 6141768 6142065 -178146597 + AluSq SINE Alu 1 298 -15 540 263 176 66 chr4 6142065 6142495 -178146167 + MLT1G1 LTR MaLR 92 594 -1 612 139 9 26 chr4 6143329 6143444 -178145218 - L1MB7 LINE L1 -43 6141 6029 2148 135 3 13 chr4 6143454 6143629 -178145033 - AluSx SINE Alu -4 308 136 2055 133 7 7 chr4 6143629 6143929 -178144733 - AluSg1 SINE Alu -9 300 1 2148 135 3 13 chr4 6143929 6144064 -178144598 - AluSx SINE Alu -176 136 1 562 289 29 69 chr4 6144100 6144153 -178144509 - L1MC4a LINE L1 -1925 5883 5829 1898 171 0 13 chr4 6144153 6144462 -178144200 - AluJb SINE Alu -2 310 6 562 289 29 69 chr4 6144462 6144754 -178143908 - L1MC4a LINE L1 -1979 5829 5552 1096 216 103 23 chr4 6144973 6145350 -178143312 + MLT1J LTR MaLR 20 482 -29 288 250 99 24 chr4 6145445 6145680 -178142982 - L2 LINE L2 -22 3250 2935 701 96 36 2 chr4 6146158 6146409 -178142253 + AluSp SINE Alu 2 305 -8 361 322 70 74 chr4 6146687 6147146 -178141516 - L2 LINE L2 0 3272 2816 1477 231 58 14 chr4 6147352 6147780 -178140882 + MER39 LTR ERV1 261 707 0 1519 208 62 18 chr4 6147843 6148280 -178140382 - MLT1C LTR MaLR -4 463 8 290 179 218 0 chr4 6150612 6150690 -178137972 - MER5A DNA MER1_type -80 109 15 816 220 39 28 chr4 6150695 6150877 -178137785 - MER5A DNA MER1_type -5 184 1 322 312 24 16 chr4 6151028 6151153 -178137509 + L2 LINE L2 2944 3069 -203 498 216 89 10 chr4 6151314 6151452 -178137210 + MIR SINE MIR 54 206 -56 190 300 100 10 chr4 6151637 6151737 -178136925 - MIR SINE MIR -4 258 150 772 282 53 11 chr4 6152284 6152550 -178136112 + L2 LINE L2 3037 3313 0 4206 117 16 30 chr4 6152567 6152663 -178135999 + MER41B LTR ERV1 2 98 -537 2529 73 0 0 chr4 6152663 6152965 -178135697 - AluY SINE Alu -7 304 3 4206 117 16 30 chr4 6152965 6153511 -178135151 + MER41B LTR ERV1 98 635 0 350 297 21 41 chr4 6153679 6153824 -178134838 + MIR3 SINE MIR 3 144 -64 846 141 0 0 chr4 6153833 6153954 -178134708 + AluJb SINE Alu 3 123 -189 226 318 0 15 chr4 6155176 6155242 -178133420 - L2 LINE L2 -1 3271 3207 608 206 34 41 chr4 6155417 6155563 -178133099 + L2 LINE L2 3166 3310 -3 2226 64 0 7 chr4 6156595 6156891 -178131771 - AluSp SINE Alu -19 294 1 349 287 94 25 chr4 6156891 6157093 -178131569 - L1ME4a LINE L1 -294 5827 5612 481 51 51 25 chr4 6157101 6157121 -178131541 - Alu SINE Alu 0 310 292 2060 169 37 5 chr4 6157121 6157524 -178131138 - L1MB3 LINE L1 0 6183 5768 481 51 51 25 chr4 6157524 6157582 -178131080 - Alu SINE Alu -18 292 230 614 228 40 8 chr4 6157583 6157787 -178130875 - L1MB3 LINE L1 -381 5787 5503 356 261 8 0 chr4 6157918 6158037 -178130625 + (CCCA)n Simple_repeat Simple_repeat 3 122 0 955 137 11 0 chr4 6158090 6158265 -178130397 + (TCCA)n Simple_repeat Simple_repeat 3 179 0 198 0 0 0 chr4 6160320 6160342 -178128320 + (A)n Simple_repeat Simple_repeat 1 22 0 1429 188 41 0 chr4 6161805 6162076 -178126586 + AluJo SINE Alu 1 282 -30 333 0 0 0 chr4 6162079 6162116 -178126546 + (CA)n Simple_repeat Simple_repeat 2 38 0 331 246 123 43 chr4 6162285 6162423 -178126239 - L2 LINE L2 -4 3309 3161 1316 94 0 85 chr4 6162476 6162700 -178125962 - AluSg/x SINE Alu -3 309 105 566 217 7 43 chr4 6162716 6162854 -178125808 - AluSq/x SINE Alu -179 133 1 21 36 0 0 chr4 6163013 6163041 -178125621 + AT_rich Low_complexity Low_complexity 1 28 0 940 88 7 36 chr4 6163072 6163209 -178125453 - AluSq/x SINE Alu -179 133 1 1159 254 43 40 chr4 6163215 6163585 -178125077 + MLT1I LTR MaLR 39 409 0 185 340 64 21 chr4 6163810 6163904 -178124758 + MIR SINE MIR 163 260 -2 660 270 56 9 chr4 6163908 6164104 -178124558 - MIR SINE MIR -30 232 34 294 219 20 137 chr4 6164247 6164393 -178124269 - MLT1H LTR MaLR 0 549 421 232 278 14 14 chr4 6164574 6164646 -178124016 - MIR SINE MIR -157 105 34 208 247 47 0 chr4 6164730 6164815 -178123847 + (TA)n Simple_repeat Simple_repeat 2 90 0 746 188 0 8 chr4 6165137 6165310 -178123352 - FLAM_C SINE Alu 0 172 1 281 293 53 0 chr4 6165380 6165455 -178123207 + MIR SINE MIR 119 197 -65 267 256 131 22 chr4 6165463 6165478 -178123184 + MIR3 SINE MIR 23 35 -173 2256 171 5 3 chr4 6165478 6165865 -178122797 - MLT1B LTR MaLR -2 388 1 267 256 131 22 chr4 6165865 6165986 -178122676 + MIR3 SINE MIR 35 174 -34 773 162 0 22 chr4 6166410 6166546 -178122116 - FLAM_A SINE Alu 0 133 1 248 306 58 40 chr4 6166775 6166948 -178121714 - L1MC/D LINE L1 -1910 5898 5723 204 179 74 28 chr4 6166949 6167038 -178121624 + MIR SINE MIR 93 253 -9 440 204 78 0 chr4 6167343 6167446 -178121216 - L2 LINE L2 0 3272 3162 2258 98 0 3 chr4 6167491 6167796 -178120866 + AluSx SINE Alu 1 304 -8 2069 131 0 0 chr4 6168209 6168500 -178120162 - AluSx SINE Alu -21 291 1 310 283 131 0 chr4 6168958 6169057 -178119605 + L2 LINE L2 3161 3272 0 804 207 62 43 chr4 6169552 6169760 -178118902 - MIR SINE MIR 0 262 51 1496 179 7 18 chr4 6169760 6170040 -178118622 - MLT1B LTR MaLR 0 390 114 255 311 29 19 chr4 6170060 6170163 -178118499 + MIR SINE MIR 117 220 -42 257 274 105 88 chr4 6170349 6170645 -178118017 + L2 LINE L2 2972 3272 0 339 303 103 12 chr4 6170744 6170909 -178117753 - L1ME4a LINE L1 -3 6118 5939 354 285 43 65 chr4 6170936 6171122 -178117540 - L1ME4a LINE L1 -157 5964 5783 278 371 101 3 chr4 6171759 6172047 -178116615 + L2 LINE L2 2915 3230 -42 1750 162 3 19 chr4 6172280 6172594 -178116068 + AluJo SINE Alu 1 309 -3 1852 233 90 32 chr4 6172821 6173378 -178115284 + MLT1E LTR MaLR 5 593 0 2177 101 0 3 chr4 6173547 6173844 -178114818 + AluSc SINE Alu 1 296 -13 253 257 14 14 chr4 6174125 6174199 -178114463 + LTR33A LTR ERVL 448 521 -2 285 253 66 22 chr4 6174201 6174292 -178114370 - L2 LINE L2 -41 3231 3137 467 193 34 39 chr4 6174341 6174468 -178114194 + MER69 DNA AcHobo 1 2467 -59 2195 96 6 13 chr4 6174490 6174802 -178113860 - AluSx SINE Alu -2 310 1 250 171 0 0 chr4 6174829 6174870 -178113792 + MER69 DNA AcHobo 2478 2518 -8 1759 188 115 65 chr4 6175331 6175825 -178112837 - MLT2B1 LTR ERVL 0 520 2 1729 114 16 75 chr4 6175825 6176131 -178112531 + AluSx SINE Alu 1 288 -24 2026 137 3 0 chr4 6176219 6176519 -178112143 + AluSp SINE Alu 1 301 -12 1098 275 45 27 chr4 6176654 6177028 -178111634 - LTR16C LTR ERVL 0 491 111 250 377 72 7 chr4 6177298 6177436 -178111226 + MIR SINE MIR 47 193 -69 415 261 22 22 chr4 6178162 6178254 -178110408 - MIR SINE MIR -86 122 31 307 325 87 8 chr4 6178538 6178664 -178109998 + MIR3 SINE MIR 60 195 -13 1104 149 0 2 chr4 6178664 6179006 -178109656 + (TCCA)n Simple_repeat Simple_repeat 1 521 0 226 320 60 33 chr4 6179221 6179371 -178109291 - MIR SINE MIR -25 237 84 625 216 227 0 chr4 6179409 6179585 -178109077 + MIR SINE MIR 45 260 -2 242 299 35 0 chr4 6180362 6180449 -178108213 + MIR SINE MIR 49 138 -124 1100 63 8 8 chr4 6180780 6181020 -178107642 + (TCTA)n Simple_repeat Simple_repeat 1 240 0 1207 197 42 11 chr4 6181037 6181301 -178107361 - AluJo SINE Alu -40 272 1 312 339 27 49 chr4 6182234 6182417 -178106245 - MIR3 SINE MIR -21 187 9 239 272 59 81 chr4 6182688 6182824 -178105838 + MIR SINE MIR 72 204 -58 515 264 83 7 chr4 6182942 6183086 -178105576 - L2 LINE L2 0 3313 3159 720 284 175 9 chr4 6183107 6183438 -178105224 - L2 LINE L2 -385 2929 2544 2330 136 25 0 chr4 6183794 6184154 -178104508 - L1PB1 LINE L1 0 6151 5783 1759 77 0 4 chr4 6184256 6184489 -178104173 - L1PB1 LINE L1 -375 5776 5545 2120 86 48 7 chr4 6184501 6184792 -178103870 - AluY SINE Alu -7 304 2 843 273 71 47 chr4 6184848 6185229 -178103433 - L1MEd LINE L1 -5719 400 11 513 270 43 37 chr4 6185281 6185444 -178103218 + MER5A DNA MER1_type 26 189 0 407 173 2 2 chr4 6185585 6185665 -178102997 - MER58 DNA MER1_type 0 2420 262 1925 137 3 0 chr4 6185739 6186024 -178102638 + AluSx SINE Alu 1 286 -26 534 129 0 0 chr4 6186024 6186109 -178102553 + (GGGA)n Simple_repeat Simple_repeat 2 86 0 2473 114 31 14 chr4 6186584 6186942 -178101720 + THE1B LTR MaLR 1 364 0 215 349 24 12 chr4 6187691 6187774 -178100888 - MIR SINE MIR -109 99 16 852 138 20 40 chr4 6187776 6187928 -178100734 + MLT1C LTR MaLR 15 163 -304 800 189 0 0 chr4 6187928 6188060 -178100602 - FRAM SINE Alu -8 168 37 1240 207 50 40 chr4 6188060 6188090 -178100572 + MLT1C LTR MaLR 157 185 -282 632 206 16 40 chr4 6188090 6188216 -178100446 + FLAM_A SINE Alu 1 123 -10 1240 207 50 40 chr4 6188216 6188484 -178100178 + MLT1C LTR MaLR 185 458 -9 964 244 129 58 chr4 6188603 6189038 -178099624 + MLT1J LTR MaLR 5 470 -41 360 173 0 0 chr4 6189170 6189245 -178099417 - L1MA10 LINE L1 -2 6332 6258 367 250 78 9 chr4 6189253 6189369 -178099293 - LTR40a LTR ERVL -353 166 43 783 288 105 27 chr4 6189527 6189937 -178098725 - LTR33 LTR ERVL -68 453 12 700 148 62 0 chr4 6190461 6190589 -178098073 + L1PA16 LINE L1 6028 6163 -3 256 340 10 20 chr4 6190942 6191042 -178097620 - MER5A DNA MER1_type -35 154 56 706 202 136 84 chr4 6191869 6192319 -178096343 - HAL1 LINE L1 -1187 1320 848 183 410 26 26 chr4 6192344 6192500 -178096162 + L2 LINE L2 2606 2761 -553 306 330 39 0 chr4 6192724 6192827 -178095835 - MIR SINE MIR -109 153 47 287 296 204 0 chr4 6193635 6193743 -178094919 + MIR3 SINE MIR 68 197 -11 846 274 36 4 chr4 6194256 6194508 -178094154 + MIR SINE MIR 3 262 0 231 248 78 23 chr4 6194954 6195083 -178093579 + L1M4 LINE L1 2915 3050 -3096 562 324 47 28 chr4 6195092 6195305 -178093357 + LTR16A LTR ERVL 1 217 -233 1272 221 50 16 chr4 6195604 6195926 -178092736 - MER74B LTR ERVL -79 543 211 237 204 0 0 chr4 6195963 6196012 -178092650 - MER74B LTR ERVL -573 49 1 539 201 22 22 chr4 6196039 6196173 -178092489 + LTR16A LTR ERVL 252 385 -65 2085 164 22 8 chr4 6196229 6196589 -178092073 - MLT1A1 LTR MaLR 0 365 1 345 285 30 6 chr4 6196602 6196767 -178091895 + L1M4 LINE L1 3094 3262 -2884 548 217 0 9 chr4 6196776 6196891 -178091771 + FLAM_C SINE Alu 24 137 -6 24 0 0 0 chr4 6197273 6197297 -178091365 + AT_rich Low_complexity Low_complexity 1 24 0 1707 171 24 0 chr4 6197316 6197603 -178091059 - AluSx SINE Alu -18 294 1 301 305 96 48 chr4 6197617 6197804 -178090858 - MIR SINE MIR -18 244 49 1109 220 33 11 chr4 6198045 6198318 -178090344 - MLT1C LTR MaLR -1 466 188 389 321 36 22 chr4 6198538 6198675 -178089987 + MIR SINE MIR 6 144 -118 259 222 48 16 chr4 6198898 6198961 -178089701 - MLT1K LTR MaLR -15 573 509 1485 206 71 52 chr4 6199072 6199447 -178089215 + Charlie4a DNA MER1_type 23 410 -1551 2060 113 0 3 chr4 6199447 6199738 -178088924 - AluSx SINE Alu -22 290 1 1485 206 71 52 chr4 6199738 6199839 -178088823 + Charlie4a DNA MER1_type 410 508 0 313 261 67 25 chr4 6200015 6200134 -178088528 + LTR16C LTR ERVL 261 384 -107 192 345 93 22 chr4 6200358 6200497 -178088165 - L2 LINE L2 -26 3287 3139 214 307 34 11 chr4 6200687 6200775 -178087887 + L2 LINE L2 2966 3055 -217 748 286 110 14 chr4 6201315 6201679 -178086983 + LTR16C LTR ERVL 93 491 0 244 303 40 0 chr4 6201969 6202045 -178086617 + MIR3 SINE MIR 89 167 -41 259 267 35 47 chr4 6202090 6202176 -178086486 + MIR SINE MIR 99 183 -79 743 238 99 46 chr4 6202349 6202483 -178086179 + MLT1C LTR MaLR 7 132 -258 2263 173 52 2 chr4 6202483 6202888 -178085774 - MSTB LTR MaLR 0 426 2 743 238 99 46 chr4 6202888 6203121 -178085541 + MLT1C LTR MaLR 132 375 -15 862 222 0 0 chr4 6203259 6203421 -178085241 - MER45A DNA AcHobo 0 178 17 199 231 0 19 chr4 6203637 6203689 -178084973 - MIR SINE MIR -138 70 20 408 271 33 8 chr4 6203765 6203887 -178084775 + MIR SINE MIR 102 226 -36 207 0 0 0 chr4 6204639 6204662 -178084000 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1739 232 18 8 chr4 6204665 6205057 -178083605 - L1MC2 LINE L1 -9 6335 5940 231 200 0 0 chr4 6205466 6205506 -178083156 + CT-rich Low_complexity Low_complexity 2 41 0 327 265 39 88 chr4 6205876 6206080 -178082582 + L2 LINE L2 2332 2525 -789 2123 177 9 0 chr4 6206354 6206687 -178081975 - MER1B DNA MER1_type 0 337 2 299 310 9 78 chr4 6207390 6207506 -178081156 - MIR SINE MIR -109 153 46 290 286 229 0 chr4 6207629 6207734 -178080928 - MIR3 SINE MIR -13 195 67 298 268 159 36 chr4 6208220 6208358 -178080304 + MIR SINE MIR 65 219 -43 1775 213 2 45 chr4 6208707 6208738 -178079924 - MLT2D LTR ERVL -10 404 373 282 56 0 0 chr4 6208738 6208774 -178079888 + (TG)n Simple_repeat Simple_repeat 1 36 0 1775 213 2 45 chr4 6208774 6209164 -178079498 - MLT2D LTR ERVL -41 373 1 301 240 54 70 chr4 6209999 6210065 -178078597 - MIR SINE MIR -11 251 186 2540 151 44 2 chr4 6210065 6210476 -178078186 + MSTA LTR MaLR 1 428 0 301 240 54 70 chr4 6210476 6210538 -178078124 - MIR SINE MIR -76 186 125 417 52 17 0 chr4 6210538 6210596 -178078066 + MSTA LTR MaLR 370 428 0 357 234 75 0 chr4 6210604 6210698 -178077964 - MIR SINE MIR -77 185 85 22 35 0 0 chr4 6211224 6211253 -178077409 + AT_rich Low_complexity Low_complexity 1 29 0 315 291 91 0 chr4 6211335 6211445 -178077217 + MIR SINE MIR 75 194 -68 481 255 41 107 chr4 6211796 6211992 -178076670 + MIR SINE MIR 16 198 -64 276 331 74 7 chr4 6212936 6213084 -178075578 + L2 LINE L2 2349 2506 -808 275 342 179 0 chr4 6213110 6213227 -178075435 - L2 LINE L2 -6 3266 3129 25 31 0 0 chr4 6214105 6214137 -178074525 + AT_rich Low_complexity Low_complexity 1 32 0 3292 109 82 25 chr4 6214201 6214772 -178073890 - MER4B LTR ERV1 -6 604 1 1408 239 55 97 chr4 6214795 6215163 -178073499 - L1ME2 LINE L1 -91 6073 5744 2701 112 43 24 chr4 6215163 6215583 -178073079 + MSTA LTR MaLR 1 428 0 1408 239 55 97 chr4 6215583 6215872 -178072790 - L1ME2 LINE L1 -420 5744 5444 231 322 35 56 chr4 6215956 6216099 -178072563 + MLT1K LTR MaLR 134 273 -315 552 314 114 43 chr4 6216376 6216726 -178071936 + L2 LINE L2 2897 3271 -1 746 269 123 8 chr4 6216830 6217223 -178071439 - LTR16C LTR ERVL -2 489 6 253 369 23 37 chr4 6217274 6217491 -178071171 + MIR SINE MIR 30 243 -19 231 290 93 9 chr4 6218900 6219007 -178069655 - MIR SINE MIR -112 150 35 293 317 48 0 chr4 6219727 6219831 -178068831 - MIR SINE MIR -104 158 50 264 300 200 4 chr4 6219903 6220143 -178068519 - L2 LINE L2 -160 3112 2826 3006 231 67 14 chr4 6220189 6221028 -178067634 + MER45B DNA AcHobo 110 992 -48 190 174 22 22 chr4 6221098 6221144 -178067518 + MIR SINE MIR 97 142 -66 401 316 53 21 chr4 6221159 6221346 -178067316 + MIR SINE MIR 1 193 -69 274 297 109 50 chr4 6221349 6221450 -178067212 + MIR SINE MIR 75 181 -81 22 0 0 0 chr4 6221504 6221526 -178067136 + AT_rich Low_complexity Low_complexity 1 22 0 1468 189 7 34 chr4 6221526 6221822 -178066840 - AluJb SINE Alu -24 288 1 482 165 0 0 chr4 6222037 6222116 -178066546 + MLT1A2 LTR MaLR 284 362 -12 2975 221 83 16 chr4 6222134 6223096 -178065566 + L1ME1 LINE L1 4834 5887 -279 2814 110 33 35 chr4 6223096 6223525 -178065137 + MSTC LTR MaLR 1 428 0 2975 221 83 16 chr4 6223525 6223822 -178064840 + L1ME1 LINE L1 5887 6163 -3 186 233 23 0 chr4 6223879 6223922 -178064740 - MIR SINE MIR -67 141 98 284 278 52 21 chr4 6223981 6224078 -178064584 - L2 LINE L2 -13 3300 3201 323 240 166 69 chr4 6224194 6224544 -178064118 + LTR33A LTR ERVL 3 386 -137 327 246 97 18 chr4 6225710 6225824 -178062838 - MLT1H LTR MaLR -3 546 424 832 283 32 18 chr4 6225824 6226107 -178062555 - L2 LINE L2 -886 2428 2142 631 279 14 40 chr4 6226231 6226453 -178062209 + Charlie8 DNA MER1_type 15 230 -2187 235 246 0 16 chr4 6226552 6226613 -178062049 + Charlie8 DNA MER1_type 2358 2417 0 324 203 0 40 chr4 6227357 6227431 -178061231 + MIR3 SINE MIR 93 163 -45 760 257 44 22 chr4 6227515 6227741 -178060921 + MIR SINE MIR 12 242 -20 769 223 76 6 chr4 6227825 6228213 -178060449 + MLT1C LTR MaLR 6 457 -10 255 342 52 11 chr4 6228394 6228543 -178060119 - MIR SINE MIR -75 133 7 197 113 38 94 chr4 6228604 6228657 -178060005 + L2 LINE L2 3264 3313 0 794 271 161 35 chr4 6229700 6230154 -178058508 - MLT1H LTR MaLR -17 532 22 2433 149 5 3 chr4 6230270 6230659 -178058003 - MLT1B LTR MaLR 0 390 1 1730 179 3 20 chr4 6231714 6232010 -178056652 + AluJo SINE Alu 1 291 -21 398 214 12 0 chr4 6232887 6232971 -178055691 - Tigger7 DNA MER2_type -6 2481 2397 * 1560 152 243 28 chr4 6232966 6233399 -178055263 - Tigger7 DNA MER2_type -1961 526 1 542 234 97 0 chr4 6233818 6233963 -178054699 + MIR SINE MIR 23 181 -81 363 267 0 0 chr4 6234187 6234262 -178054400 + MIR SINE MIR 71 145 -117 962 279 59 50 chr4 6234264 6234870 -178053792 + MLT2E LTR ERVL 1 612 -16 727 283 57 11 chr4 6235001 6235284 -178053378 - L1ME4a LINE L1 -267 5854 5559 1102 194 18 31 chr4 6236795 6237022 -178051640 - MER58A DNA MER1_type 0 224 1 474 268 65 22 chr4 6237196 6237334 -178051328 - MIR SINE MIR -97 165 22 320 233 207 7 chr4 6237562 6237712 -178050950 + MIR SINE MIR 77 256 -6 284 258 46 0 chr4 6238360 6238488 -178050174 - MIR3 SINE MIR -14 194 81 240 225 32 79 chr4 6239446 6239577 -178049085 - MIR SINE MIR -41 221 101 315 291 48 0 chr4 6241265 6241376 -178047286 + MIR SINE MIR 51 175 -33 219 220 0 0 chr4 6244377 6244427 -178044235 + A-rich Low_complexity Low_complexity 1 50 0 474 231 70 14 chr4 6245135 6245278 -178043384 + MIR SINE MIR 46 196 -66 252 248 266 9 chr4 6245855 6245968 -178042694 + MER5A DNA MER1_type 35 176 -13 191 262 24 0 chr4 6246203 6246245 -178042417 - L2 LINE L2 -19 3294 3252 264 192 77 0 chr4 6246299 6246351 -178042311 - MIR SINE MIR -138 124 69 294 338 74 26 chr4 6247715 6248106 -178040556 - L1ME4a LINE L1 -748 5398 4989 2850 13 0 0 chr4 6248112 6248421 -178040241 - AluYa5 SINE Alu -2 309 1 395 272 69 60 chr4 6249416 6249648 -178039014 - L2 LINE L2 -89 3183 2950 268 239 28 0 chr4 6250095 6250166 -178038496 - MIR3 SINE MIR -48 160 88 3486 184 41 15 chr4 6250258 6250986 -178037676 + L1MB5 LINE L1 5428 6174 0 1495 164 7 49 chr4 6250992 6251278 -178037384 + AluJo SINE Alu 3 276 -36 732 267 71 0 chr4 6251389 6251599 -178037063 - MIR SINE MIR -20 242 18 890 213 53 12 chr4 6251741 6251910 -178036752 - AluJo SINE Alu -136 176 1 2080 122 6 56 chr4 6251919 6252238 -178036424 - AluSx SINE Alu -9 303 1 238 302 0 16 chr4 6252298 6252361 -178036301 + MIR SINE MIR 201 262 0 1767 215 111 39 chr4 6252388 6252927 -178035735 - MLT1G1 LTR MaLR -12 583 6 252 369 141 0 chr4 6253001 6253199 -178035463 + MIR SINE MIR 31 256 -6 260 236 107 8 chr4 6253836 6253966 -178034696 + MIR SINE MIR 97 243 -19 467 236 189 40 chr4 6253974 6254113 -178034549 + MIR SINE MIR 10 127 -135 1935 146 0 54 chr4 6254113 6254429 -178034233 + AluJb SINE Alu 1 299 -13 467 236 189 40 chr4 6254429 6254501 -178034161 + MIR SINE MIR 127 259 -3 2027 158 0 13 chr4 6254633 6254949 -178033713 - AluJb SINE Alu 0 312 1 1144 206 71 0 chr4 6254957 6255239 -178033423 - L1MD2 LINE L1 -1 6358 6057 2097 111 0 0 chr4 6255289 6255560 -178033102 + AluSx SINE Alu 1 271 -41 2175 52 4 17 chr4 6255565 6256089 -178032573 + LTR10C LTR ERV1 11 591 0 204 97 0 0 chr4 6256104 6256135 -178032527 + (A)n Simple_repeat Simple_repeat 1 31 0 395 252 112 7 chr4 6256175 6256318 -178032344 + MIR SINE MIR 2 159 -103 262 290 12 0 chr4 6256390 6256489 -178032173 - MIR SINE MIR -75 133 33 394 299 222 14 chr4 6256529 6256736 -178031926 + MIR SINE MIR 13 262 0 26 0 0 0 chr4 6256772 6256798 -178031864 + AT_rich Low_complexity Low_complexity 1 26 0 207 319 14 0 chr4 6258147 6258219 -178030443 + MIR SINE MIR 67 139 -123 2859 16 0 0 chr4 6259149 6259460 -178029202 - AluYa5 SINE Alu 0 311 1 395 272 69 60 chr4 6260455 6260687 -178027975 - L2 LINE L2 -89 3183 2950 268 239 28 0 chr4 6261134 6261205 -178027457 - MIR3 SINE MIR -48 160 88 3486 184 41 15 chr4 6261297 6262025 -178026637 + L1MB5 LINE L1 5428 6174 0 1495 164 7 49 chr4 6262031 6262317 -178026345 + AluJo SINE Alu 3 276 -36 732 267 71 0 chr4 6262428 6262638 -178026024 - MIR SINE MIR -20 242 18 263 266 25 13 chr4 6263534 6263613 -178025049 - MIR SINE MIR -64 144 65 272 204 0 19 chr4 6263979 6264033 -178024629 + MIR SINE MIR 58 110 -152 610 198 87 17 chr4 6264150 6264322 -178024340 + MIR SINE MIR 65 248 -14 318 287 0 0 chr4 6264364 6264507 -178024155 + (CAT)n Simple_repeat Simple_repeat 1 143 0 657 230 0 0 chr4 6264560 6264738 -178023924 + (CAT)n Simple_repeat Simple_repeat 2 179 0 693 247 0 0 chr4 6264767 6265108 -178023554 + (CAT)n Simple_repeat Simple_repeat 1 341 0 396 211 0 26 chr4 6265120 6265276 -178023386 + (CAT)n Simple_repeat Simple_repeat 1 152 0 942 185 58 5 chr4 6265694 6265883 -178022779 - MLT1B LTR MaLR 0 390 192 612 185 80 25 chr4 6265963 6266125 -178022537 - MLT1B LTR MaLR -217 173 3 678 329 40 9 chr4 6266139 6266364 -178022298 - MIR SINE MIR -11 251 20 3517 176 97 130 chr4 6266486 6266600 -178022062 + Charlie1a DNA MER1_type 85 201 -2560 1446 6 0 0 chr4 6266600 6266763 -178021899 + (CTATG)n Simple_repeat Simple_repeat 3 165 0 3517 176 97 130 chr4 6266763 6267293 -178021369 + Charlie1a DNA MER1_type 201 747 -2014 2242 110 0 3 chr4 6267293 6267583 -178021079 - AluSc SINE Alu -20 289 1 3517 176 97 130 chr4 6267583 6268312 -178020350 + Charlie1a DNA MER1_type 747 1414 -1347 2296 125 0 0 chr4 6268312 6268615 -178020047 + AluSx SINE Alu 1 303 -9 3517 176 97 130 chr4 6268615 6268656 -178020006 + Charlie1a DNA MER1_type 1414 1455 0 189 297 27 14 chr4 6268662 6268736 -178019926 - MIR SINE MIR -119 143 69 557 270 94 60 chr4 6268781 6269099 -178019563 + LTR16A LTR ERVL 76 404 -46 389 184 26 0 chr4 6269617 6269693 -178018969 + MIR SINE MIR 111 188 -74 313 289 118 7 chr4 6270392 6270527 -178018135 - L3 LINE CR1 -3 1574 1425 219 216 0 0 chr4 6270823 6270860 -178017802 - L2 LINE L2 -91 3181 3145 490 242 67 36 chr4 6270958 6271123 -178017539 + MIR SINE MIR 22 191 -71 634 249 30 18 chr4 6271586 6271755 -178016907 + MIR SINE MIR 22 192 -70 727 304 98 23 chr4 6271999 6272345 -178016317 + L3 LINE CR1 1204 1575 -2 1148 261 112 8 chr4 6272372 6272766 -178015896 - MLT1J2 LTR MaLR -3 447 13 329 289 125 0 chr4 6272804 6272908 -178015754 - L2 LINE L2 0 3272 3156 183 242 97 0 chr4 6273028 6273090 -178015572 + MIR SINE MIR 105 172 -90 221 315 33 11 chr4 6273553 6273645 -178015017 - MIR SINE MIR -122 140 47 383 269 187 8 chr4 6273866 6274000 -178014662 + MIR SINE MIR 4 161 -101 331 299 173 16 chr4 6274591 6274718 -178013944 - L2 LINE L2 -3 3269 3123 346 263 76 42 chr4 6274731 6274849 -178013813 + MIR SINE MIR 80 201 -61 311 276 51 27 chr4 6275258 6275397 -178013265 + MIR SINE MIR 16 154 -65 369 288 54 9 chr4 6275446 6275557 -178013105 + L2 LINE L2 3193 3308 -5 218 200 25 0 chr4 6275559 6275599 -178013063 + L2 LINE L2 3230 3270 -2 208 347 13 13 chr4 6275694 6275769 -178012893 - MIR SINE MIR -64 144 70 540 279 79 70 chr4 6275849 6276265 -178012397 - MLT1L LTR MaLR 0 615 196 327 299 31 20 chr4 6276463 6276601 -178012061 - MIR SINE MIR -67 141 16 495 195 108 104 chr4 6276926 6277213 -178011449 + L1MC4 LINE L1 7626 7913 -129 3678 161 63 6 chr4 6277256 6277919 -178010743 + MER44D DNA MER2_type 5 705 0 244 120 40 0 chr4 6277941 6277991 -178010671 + (CATATA)n Simple_repeat Simple_repeat 5 56 0 285 258 62 55 chr4 6278011 6278139 -178010523 + L1MC4 LINE L1 7914 8042 0 27 0 0 0 chr4 6278144 6278171 -178010491 + AT_rich Low_complexity Low_complexity 1 27 0 387 0 0 0 chr4 6278598 6278641 -178010021 + (CA)n Simple_repeat Simple_repeat 1 43 0 240 230 40 27 chr4 6279402 6279476 -178009186 + L2 LINE L2 2909 2983 -289 456 244 0 0 chr4 6279765 6279855 -178008807 - MIR SINE MIR -103 159 70 469 281 64 41 chr4 6280208 6280379 -178008283 + MER63A DNA MER1_type 1 175 -35 314 270 9 52 chr4 6280411 6280526 -178008136 - MIR SINE MIR -81 181 72 236 231 0 19 chr4 6280764 6280816 -178007846 - MIR SINE MIR -108 100 50 1564 215 55 25 chr4 6281119 6281482 -178007180 + MLT1A2 LTR MaLR 1 374 0 1786 157 168 8 chr4 6281746 6282115 -178006547 + MSTA LTR MaLR 1 428 0 9598 117 19 38 chr4 6282118 6283720 -178004942 + MSTA-int LTR MaLR 4 1575 -5 1895 164 143 11 chr4 6283732 6284110 -178004552 + MSTA LTR MaLR 1 428 0 709 293 57 51 chr4 6284134 6284342 -178004320 - MLT1J LTR MaLR -157 354 142 872 110 0 52 chr4 6284342 6284478 -178004184 + FLAM_C SINE Alu 5 133 0 709 293 57 51 chr4 6284478 6284621 -178004041 - MLT1J LTR MaLR -369 142 1 199 263 0 0 chr4 6285233 6285271 -178003391 + L2 LINE L2 3251 3288 -25 226 269 39 26 chr4 6285332 6285410 -178003252 + MIR SINE MIR 184 262 0 450 295 126 46 chr4 6285445 6285730 -178002932 - L2 LINE L2 0 3272 2965 709 242 66 16 chr4 6287366 6287557 -178001105 + MIR3 SINE MIR 1 201 -7 670 223 0 17 chr4 6287569 6287861 -178000801 + (ATGGTG)n Simple_repeat Simple_repeat 1 287 0 843 204 0 0 chr4 6287863 6288099 -178000563 + (TGG)n Simple_repeat Simple_repeat 1 236 0 243 204 0 0 chr4 6288121 6288175 -178000487 + (TGG)n Simple_repeat Simple_repeat 2 55 0 374 314 72 42 chr4 6288196 6288432 -178000230 - MIR SINE MIR -19 243 1 193 362 48 19 chr4 6288632 6288737 -177999925 + L2 LINE L2 2649 2756 -558 192 348 43 17 chr4 6288803 6288918 -177999744 + L2 LINE L2 2871 2988 -284 424 265 55 61 chr4 6289064 6289245 -177999417 + MIR SINE MIR 13 192 -70 1917 166 13 7 chr4 6289635 6289937 -177998725 - AluJb SINE Alu -8 304 1 201 283 208 9 chr4 6290230 6290336 -177998326 - MIR3 SINE MIR -52 156 30 360 255 145 86 chr4 6290638 6291066 -177997596 - MLT1J LTR MaLR -58 453 1 292 273 61 11 chr4 6291314 6291438 -177997224 + MIR SINE MIR 38 166 -59 4251 274 68 31 chr4 6291438 6291670 -177996992 + L1ME1 LINE L1 22 244 -6152 1586 214 97 3 chr4 6291670 6292030 -177996632 - MSTD LTR MaLR 0 396 3 4251 274 68 31 chr4 6292030 6293789 -177994873 + L1ME1 LINE L1 244 2086 -4310 2293 245 76 27 chr4 6293792 6294344 -177994318 + L1ME1 LINE L1 4923 5446 -789 1413 199 40 34 chr4 6294344 6294640 -177994022 + AluJo SINE Alu 5 302 -10 2293 245 76 27 chr4 6294640 6295347 -177993315 + L1ME1 LINE L1 5446 6230 -5 769 248 36 18 chr4 6295492 6295744 -177992918 - MIR SINE MIR 0 262 6 1613 132 53 64 chr4 6296298 6296613 -177992049 + AluSx SINE Alu 5 316 0 2494 191 48 4 chr4 6296967 6297450 -177991212 + MLT1D LTR MaLR 1 504 -1 571 299 107 14 chr4 6297616 6297897 -177990765 + LTR16A LTR ERVL 113 419 -31 682 172 86 32 chr4 6298214 6298400 -177990262 + MLT1H1 LTR MaLR 360 555 0 340 285 30 35 chr4 6298530 6298698 -177989964 - MIR SINE MIR -18 244 76 296 296 11 0 chr4 6298724 6298812 -177989850 - L2 LINE L2 0 3313 3225 184 295 45 45 chr4 6298822 6298934 -177989728 - L2 LINE L2 -205 3108 2997 273 278 204 0 chr4 6299285 6299393 -177989269 + MIR SINE MIR 23 152 -110 319 294 84 0 chr4 6299540 6299659 -177989003 - L2 LINE L2 0 3272 3144 187 333 107 0 chr4 6299703 6299787 -177988875 - L2 LINE L2 -248 3024 2932 236 335 143 11 chr4 6299838 6300020 -177988642 - L2 LINE L2 -508 2806 2601 407 240 224 22 chr4 6300024 6300203 -177988459 - L2 LINE L2 0 3313 3099 263 240 74 25 chr4 6300570 6300691 -177987971 - L1ME3 LINE L1 -8 6154 6028 217 296 67 137 chr4 6301037 6301321 -177987341 + L2 LINE L2 2943 3206 -66 491 273 86 0 chr4 6301700 6301828 -177986834 + MIR SINE MIR 35 173 -89 21 0 0 0 chr4 6302487 6302508 -177986154 + AT_rich Low_complexity Low_complexity 1 21 0 229 258 61 0 chr4 6302678 6302744 -177985918 - MIR SINE MIR -78 184 115 187 227 0 91 chr4 6303477 6303543 -177985119 + MIR SINE MIR 64 123 -139 412 274 49 97 chr4 6303716 6303942 -177984720 + L2 LINE L2 3027 3241 -31 2067 171 28 6 chr4 6303942 6304299 -177984363 + MLT1A1 LTR MaLR 1 365 0 185 65 32 0 chr4 6304329 6304360 -177984302 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 272 296 22 44 chr4 6304361 6304496 -177984166 - MIR SINE MIR -78 184 53 573 297 124 39 chr4 6305438 6305873 -177982789 + L2 LINE L2 2216 2687 -627 535 296 77 6 chr4 6305941 6306110 -177982552 - MIR SINE MIR -19 243 63 252 231 0 0 chr4 6306555 6306607 -177982055 + L1MB1 LINE L1 6119 6170 -19 408 173 0 36 chr4 6306613 6306723 -177981939 + GA-rich Low_complexity Low_complexity 4 109 0 485 242 22 67 chr4 6306740 6306918 -177981744 - MIR3 SINE MIR -9 199 30 7820 123 15 7 chr4 6307957 6309977 -177978685 + L1PA8A LINE L1 4095 6131 0 290 198 74 12 chr4 6310056 6310137 -177978525 + MIR SINE MIR 105 190 -72 273 281 0 62 chr4 6310448 6310544 -177978118 - MIR3 SINE MIR -32 176 87 2212 139 71 15 chr4 6310573 6310840 -177977822 - MSTB1 LTR MaLR -14 418 120 2700 101 0 5 chr4 6310840 6311215 -177977447 + THE1C LTR MaLR 3 375 0 2212 139 71 15 chr4 6311215 6311343 -177977319 - MSTB1 LTR MaLR -312 120 1 185 247 104 52 chr4 6311809 6311886 -177976776 + L2 LINE L2 3208 3288 -25 359 235 82 0 chr4 6313675 6313773 -177974889 - MIR SINE MIR -109 153 48 385 228 66 81 chr4 6314146 6314282 -177974380 + MIR SINE MIR 2 135 -127 317 291 10 10 chr4 6315146 6315249 -177973413 + MIR SINE MIR 77 179 -83 585 222 16 16 chr4 6315291 6315417 -177973245 + MIR SINE MIR 23 148 -114 1983 154 128 8 chr4 6315425 6315807 -177972855 + MSTA LTR MaLR 1 428 0 7867 168 45 36 chr4 6315807 6317444 -177971218 + MSTA-int LTR MaLR 1 1651 0 1952 135 141 8 chr4 6317444 6317821 -177970841 + MSTA LTR MaLR 1 427 -1 252 363 40 45 chr4 6317845 6318068 -177970594 - MIR SINE MIR -31 231 10 213 39 0 0 chr4 6318450 6318476 -177970186 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 3763 157 21 30 chr4 6318559 6319326 -177969336 + L1MB3 LINE L1 5422 6181 -2 2710 90 0 6 chr4 6319479 6319845 -177968817 - THE1B LTR MaLR 0 364 1 224 161 138 46 chr4 6319913 6320000 -177968662 - MER5A DNA MER1_type -81 108 14 248 163 0 0 chr4 6320107 6320150 -177968512 - MLT2C2 LTR ERVL -2 462 420 232 109 18 18 chr4 6320153 6320208 -177968454 + (TC)n Simple_repeat Simple_repeat 2 56 0 * 314 289 7 0 chr4 6320205 6320354 -177968308 + (TCCA)n Simple_repeat Simple_repeat 3 152 0 * 429 195 11 38 chr4 6320328 6320513 -177968149 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 2466 81 0 0 chr4 6320552 6320848 -177967814 - AluY SINE Alu -13 298 3 2014 174 56 5 chr4 6320855 6321245 -177967417 - MLT2C2 LTR ERVL -50 414 5 394 293 45 19 chr4 6321252 6321409 -177967253 + MIR SINE MIR 73 233 -29 1448 243 91 7 chr4 6322003 6322422 -177966240 + MLT1C LTR MaLR 6 459 -8 206 215 46 31 chr4 6322644 6322709 -177965953 + L2 LINE L2 3236 3301 -12 395 178 22 40 chr4 6323032 6323263 -177965399 + CT-rich Low_complexity Low_complexity 1 227 0 277 255 57 28 chr4 6324289 6324395 -177964267 - MIR SINE MIR -63 145 37 236 212 45 15 chr4 6324408 6324474 -177964188 - L3 LINE CR1 -667 910 843 355 311 106 8 chr4 6324504 6324768 -177963894 - L1ME4a LINE L1 0 6121 5832 219 214 0 0 chr4 6324784 6324826 -177963836 - MIR SINE MIR -14 248 207 1813 120 53 25 chr4 6324939 6325222 -177963440 - AluJb SINE Alu -21 291 1 1295 203 77 40 chr4 6325292 6325461 -177963201 + MLT1B LTR MaLR 1 162 -228 2148 71 15 4 chr4 6325461 6325730 -177962932 + AluY SINE Alu 1 272 -39 1295 203 77 40 chr4 6325730 6325935 -177962727 + MLT1B LTR MaLR 162 389 -1 448 252 8 0 chr4 6325936 6326059 -177962603 + L1MA10 LINE L1 6204 6327 -7 445 258 104 16 chr4 6326240 6326422 -177962240 + MIR SINE MIR 63 260 -2 181 255 0 43 chr4 6326542 6326589 -177962073 - MER5A DNA MER1_type -5 184 140 418 143 12 0 chr4 6326599 6326683 -177961979 - L1PB2 LINE L1 0 6151 6067 2183 96 0 0 chr4 6326687 6326988 -177961674 + L1PB1 LINE L1 5823 6123 -28 1280 108 36 0 chr4 6326999 6327193 -177961469 - L1PB2 LINE L1 -366 5785 5585 427 303 75 11 chr4 6327476 6327664 -177960998 - MIR SINE MIR -62 200 1 5914 195 17 15 chr4 6327774 6328995 -177959667 + L1MC1 LINE L1 4285 5503 -830 2164 147 28 19 chr4 6328995 6329356 -177959306 - THE1B LTR MaLR 0 364 1 5914 195 17 15 chr4 6329356 6329892 -177958770 + L1MC1 LINE L1 5503 6049 -284 2015 164 3 0 chr4 6329892 6330202 -177958460 + AluJb SINE Alu 1 311 -1 5914 195 17 15 chr4 6330202 6330485 -177958177 + L1MC1 LINE L1 6049 6330 -3 944 246 87 48 chr4 6330495 6330726 -177957936 - MLT1I LTR MaLR 0 409 158 1955 174 0 0 chr4 6330726 6331019 -177957643 - AluJo SINE Alu -19 293 1 944 246 87 48 chr4 6331019 6331144 -177957518 - MLT1I LTR MaLR -251 158 39 251 375 10 0 chr4 6331426 6331530 -177957132 + MIR SINE MIR 41 145 -63 296 322 26 0 chr4 6331676 6331791 -177956871 + Charlie8 DNA MER1_type 118 235 -2182 353 265 8 8 chr4 6331956 6332215 -177956447 + (TG)n Simple_repeat Simple_repeat 1 259 0 229 238 0 32 chr4 6333077 6333140 -177955522 + (CAGAGA)n Simple_repeat Simple_repeat 3 63 0 229 118 39 0 chr4 6333144 6333195 -177955467 + GA-rich Low_complexity Low_complexity 1 53 0 297 311 60 20 chr4 6333790 6333941 -177954721 - MIR SINE MIR -54 208 52 442 257 164 13 chr4 6334089 6334241 -177954421 - MER5A DNA MER1_type -6 183 9 368 287 49 18 chr4 6334430 6334594 -177954068 + MIR SINE MIR 20 188 -74 992 224 38 19 chr4 6334602 6334865 -177953797 - MLT1C LTR MaLR 0 467 200 542 278 25 0 chr4 6335354 6335516 -177953146 - MER5A DNA MER1_type 0 189 24 237 327 40 40 chr4 6335511 6335612 -177953050 - MIR SINE MIR -91 171 71 * 1869 124 4 18 chr4 6336118 6336393 -177952269 + AluSx SINE Alu 41 311 -1 283 224 0 0 chr4 6337120 6337178 -177951484 + MIR SINE MIR 62 119 -143 191 146 24 0 chr4 6337544 6337585 -177951077 + (TGGG)n Simple_repeat Simple_repeat 3 44 0 227 254 53 30 chr4 6338172 6338273 -177950389 - MIR SINE MIR -58 150 47 226 234 0 0 chr4 6338631 6338678 -177949984 + MIR SINE MIR 107 153 -109 1276 216 41 84 chr4 6338870 6339356 -177949306 + MLT1C LTR MaLR 1 465 -2 2189 106 0 11 chr4 6339544 6339855 -177948807 + AluSx SINE Alu 3 310 0 2294 111 0 0 chr4 6339932 6340229 -177948433 - AluSx SINE Alu -15 297 1 284 300 114 14 chr4 6340708 6340848 -177947814 + MIR SINE MIR 59 212 -50 236 271 59 0 chr4 6340967 6341052 -177947610 + MIR SINE MIR 109 198 -64 252 298 58 41 chr4 6341815 6341936 -177946726 + MIR SINE MIR 78 200 -62 427 223 35 24 chr4 6342072 6342232 -177946430 - MIR SINE MIR 0 262 100 923 60 0 0 chr4 6342278 6342395 -177946267 + FLAM_C SINE Alu 1 117 -16 1175 269 71 35 chr4 6342395 6342914 -177945748 - L2 LINE L2 -6 3307 2776 190 342 51 0 chr4 6343111 6343190 -177945472 + MIR SINE MIR 98 180 -82 385 268 45 45 chr4 6343260 6343417 -177945245 - MIR SINE MIR -85 177 21 279 276 35 11 chr4 6344071 6344158 -177944504 + MIR3 SINE MIR 82 170 -38 1898 156 7 13 chr4 6344173 6344480 -177944182 + AluJo SINE Alu 1 305 -7 342 297 130 0 chr4 6344955 6345093 -177943569 + MIR SINE MIR 105 260 -2 217 357 84 7 chr4 6345558 6345712 -177942950 + MIR SINE MIR 49 214 -48 299 344 58 7 chr4 6346009 6346163 -177942499 + MIR3 SINE MIR 25 186 -22 262 0 26 26 chr4 6346164 6346203 -177942459 + (TTTTG)n Simple_repeat Simple_repeat 4 42 0 1679 127 27 60 chr4 6348309 6348609 -177940053 - AluJo SINE Alu -13 299 10 511 290 32 68 chr4 6348679 6348927 -177939735 + MIR SINE MIR 20 258 -4 1206 122 0 0 chr4 6351373 6351569 -177937093 + Tigger4(Zombi) DNA MER2_type 2479 2674 -57 1083 206 50 52 chr4 6351573 6351937 -177936725 + THE1C LTR MaLR 1 363 -12 189 154 0 0 chr4 6353291 6353330 -177935332 + (CA)n Simple_repeat Simple_repeat 1 39 0 820 247 94 66 chr4 6354109 6354464 -177934198 + MLT1D LTR MaLR 24 397 -108 2160 125 0 3 chr4 6354464 6354759 -177933903 - AluSx SINE Alu -18 294 1 820 247 94 66 chr4 6354759 6354872 -177933790 + MLT1D LTR MaLR 397 505 0 479 216 58 29 chr4 6354949 6355162 -177933500 - L1M LINE L1 -738 5424 5207 1080 180 149 34 chr4 6355673 6355968 -177932694 - THE1C LTR MaLR -46 329 1 520 343 30 4 chr4 6356238 6356509 -177932153 + L1MC4 LINE L1 6446 6723 -1319 181 219 0 109 chr4 6357461 6357525 -177931137 - MIR3 SINE MIR 0 208 152 901 259 214 5 chr4 6357556 6357939 -177930723 - L2 LINE L2 0 3313 2851 21 0 0 0 chr4 6358514 6358535 -177930127 + AT_rich Low_complexity Low_complexity 1 21 0 303 289 10 10 chr4 6359060 6359157 -177929505 + L1M4 LINE L1 4923 5019 -1127 2158 89 25 0 chr4 6359166 6359447 -177929215 + AluSp SINE Alu 1 288 -25 244 279 55 33 chr4 6359466 6359539 -177929123 + L1M4 LINE L1 5010 5080 -1066 2352 100 0 6 chr4 6359539 6359850 -177928812 - AluY SINE Alu -2 309 1 244 279 55 33 chr4 6359850 6359959 -177928703 + L1M4 LINE L1 5080 5196 -950 563 203 42 10 chr4 6360070 6360282 -177928380 + L1M4 LINE L1 5207 5424 -738 1027 240 92 63 chr4 6360359 6360472 -177928190 - MLT1D LTR MaLR 0 505 397 2160 125 0 3 chr4 6360472 6360767 -177927895 + AluSx SINE Alu 1 294 -18 1027 240 92 63 chr4 6360767 6361144 -177927518 - MLT1D LTR MaLR -108 397 1 3415 130 65 25 chr4 6361909 6362424 -177926238 - MER51A LTR ERV1 -9 625 81 2322 96 0 0 chr4 6362424 6362716 -177925946 - AluSq SINE Alu -21 292 1 3415 130 65 25 chr4 6362716 6362801 -177925861 - MER51A LTR ERV1 -553 81 1 1281 122 0 21 chr4 6362999 6363187 -177925475 - FRAM SINE Alu 0 176 1 340 200 147 36 chr4 6363320 6363459 -177925203 + MIR SINE MIR 2 153 -66 257 250 10 52 chr4 6363662 6363758 -177924904 + MIR SINE MIR 109 200 -62 351 113 0 0 chr4 6363806 6363859 -177924803 + (TTA)n Simple_repeat Simple_repeat 1 53 0 1207 289 36 31 chr4 6364575 6365012 -177923650 - MLT1J LTR MaLR 0 511 38 339 261 89 52 chr4 6365098 6365237 -177923425 + MIR SINE MIR 4 146 -66 731 171 0 0 chr4 6365425 6365563 -177923099 - FRAM SINE Alu 0 166 29 219 231 0 0 chr4 6365701 6365740 -177922922 - MER5A DNA MER1_type -90 99 61 1952 117 4 0 chr4 6365809 6366065 -177922597 + AluSx SINE Alu 1 257 -55 210 37 0 0 chr4 6366071 6366098 -177922564 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 817 150 0 8 chr4 6366107 6366227 -177922435 - AluJb SINE Alu -84 228 110 726 139 0 0 chr4 6366341 6366456 -177922206 + AluSp/q SINE Alu 193 307 -6 480 146 9 27 chr4 6366456 6366566 -177922096 + GA-rich Low_complexity Low_complexity 1 108 0 189 0 0 0 chr4 6367294 6367315 -177921347 + (TTA)n Simple_repeat Simple_repeat 1 21 0 280 306 8 24 chr4 6368034 6368158 -177920504 + GA-rich Low_complexity Low_complexity 4 125 0 22 80 0 0 chr4 6368530 6368580 -177920082 + GC_rich Low_complexity Low_complexity 1 50 0 25 65 0 0 chr4 6368737 6368783 -177919879 + GC_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr4 6370071 6370100 -177918562 + GC_rich Low_complexity Low_complexity 1 29 0 209 93 70 0 chr4 6370219 6370262 -177918400 + T-rich Low_complexity Low_complexity 3 48 0 236 309 40 92 chr4 6371228 6371380 -177917282 + MIR SINE MIR 119 262 0 361 257 20 61 chr4 6372073 6372221 -177916441 - MIR3 SINE MIR -26 182 41 351 65 0 0 chr4 6372305 6372351 -177916311 + (A)n Simple_repeat Simple_repeat 1 46 0 21 0 0 0 chr4 6372510 6372531 -177916131 + AT_rich Low_complexity Low_complexity 1 21 0 27 81 0 0 chr4 6372610 6372672 -177915990 + AT_rich Low_complexity Low_complexity 1 62 0 221 246 35 0 chr4 6374308 6374365 -177914297 + MIR3 SINE MIR 98 156 -52 22 106 0 0 chr4 6374687 6374772 -177913890 + GC_rich Low_complexity Low_complexity 1 85 0 319 350 34 0 chr4 6375278 6375395 -177913267 - MIR SINE MIR -122 140 20 23 54 0 0 chr4 6376071 6376108 -177912554 + GC_rich Low_complexity Low_complexity 1 37 0 356 239 17 39 chr4 6376488 6376668 -177911994 + (CA)n Simple_repeat Simple_repeat 1 176 0 405 293 88 7 chr4 6377502 6377649 -177911013 + MIR SINE MIR 33 191 -71 382 326 79 26 chr4 6378709 6378936 -177909726 - MIR SINE MIR -6 256 18 412 224 84 0 chr4 6379301 6379408 -177909254 - MIR SINE MIR -66 196 81 192 251 57 32 chr4 6379676 6379770 -177908892 - MIR SINE MIR -55 153 56 292 309 122 26 chr4 6379820 6380050 -177908612 - L2 LINE L2 -136 3177 2926 346 324 20 0 chr4 6380690 6380838 -177907824 - MIR SINE MIR -36 226 76 277 225 56 0 chr4 6380856 6380927 -177907735 + MER96 DNA MER1_type? 20 94 -81 257 304 16 11 chr4 6381185 6381364 -177907298 - MIR SINE MIR -19 243 65 2028 238 97 54 chr4 6382940 6383819 -177904843 + MER45C DNA AcHobo 5 953 0 289 254 182 39 chr4 6384385 6384566 -177904096 + L2 LINE L2 3107 3313 0 388 272 7 37 chr4 6384697 6384833 -177903829 - L2 LINE L2 -11 3302 3171 22 0 0 0 chr4 6384898 6384920 -177903742 + AT_rich Low_complexity Low_complexity 1 22 0 1057 139 0 17 chr4 6385075 6385248 -177903414 - L1PA8 LINE L1 -8 6164 5995 2113 102 0 54 chr4 6385267 6385580 -177903082 - AluSx SINE Alu -16 296 1 394 325 8 0 chr4 6385585 6385708 -177902954 - MIR SINE MIR -118 144 21 984 291 91 20 chr4 6385769 6386263 -177902399 + L2 LINE L2 2783 3312 -1 2046 126 0 36 chr4 6386266 6386575 -177902087 - AluSx SINE Alu -14 298 1 803 244 16 51 chr4 6387190 6387444 -177901218 + MIR SINE MIR 3 247 -15 280 333 56 43 chr4 6387597 6387759 -177900903 - MIR SINE MIR -76 186 23 2124 138 0 3 chr4 6388181 6388472 -177900190 - AluJb SINE Alu -22 290 1 266 265 72 66 chr4 6388482 6388663 -177899999 - MIR SINE MIR -73 189 8 35 54 0 0 chr4 6389210 6389266 -177899396 + AT_rich Low_complexity Low_complexity 1 56 0 2206 287 65 14 chr4 6389351 6390232 -177898430 - HAL1 LINE L1 0 2507 1582 530 251 151 0 chr4 6390264 6390463 -177898199 - HAL1 LINE L1 -976 1531 1303 2091 180 30 13 chr4 6390466 6390861 -177897801 + Tigger4(Zombi) DNA MER2_type 1 402 -2329 2301 101 0 0 chr4 6390866 6391162 -177897500 + AluSq SINE Alu 1 296 -17 25 31 0 0 chr4 6391162 6391194 -177897468 + AT_rich Low_complexity Low_complexity 1 32 0 2067 161 50 48 chr4 6391194 6391655 -177897007 + Tigger4(Zombi) DNA MER2_type 392 853 -1878 703 192 8 0 chr4 6391655 6391780 -177896882 + AluJ SINE Alu 1 126 -186 819 206 16 38 chr4 6391994 6392178 -177896484 + AluJ SINE Alu 116 295 -17 1263 141 0 0 chr4 6392178 6392369 -177896293 + AluSc SINE Alu 119 309 0 2482 142 21 16 chr4 6392386 6392809 -177895853 + Tigger4(Zombi) DNA MER2_type 829 1253 -1478 889 144 0 0 chr4 6392844 6392962 -177895700 - FLAM_C SINE Alu -25 118 1 5501 131 24 11 chr4 6392964 6393028 -177895634 + Tigger4(Zombi) DNA MER2_type 1237 1299 -1432 1583 183 72 11 chr4 6393028 6393330 -177895332 - AluJo SINE Alu 0 312 1 5501 131 24 11 chr4 6393330 6394177 -177894485 + Tigger4(Zombi) DNA MER2_type 1299 2160 -571 975 79 9 2 chr4 6394215 6394474 -177894188 + AluSx SINE Alu 1 304 0 1439 148 52 20 chr4 6394484 6394789 -177893873 + Tigger4(Zombi) DNA MER2_type 2178 2492 -239 2588 117 2 8 chr4 6394926 6395327 -177893335 - L1P LINE L1 -5745 401 3 248 208 31 39 chr4 6395328 6395458 -177893204 - L1MEc LINE L1 -2185 4030 3902 472 151 54 0 chr4 6395458 6395551 -177893111 - MSTB LTR MaLR 0 426 329 2825 206 20 43 chr4 6395564 6395898 -177892764 - L1MEc LINE L1 -3066 3149 2809 1616 206 7 4 chr4 6395898 6396200 -177892462 - AluJb SINE Alu 0 303 1 2825 206 20 43 chr4 6396200 6396719 -177891943 - L1MEc LINE L1 -3406 2809 2315 15003 92 1 1 chr4 6397000 6399188 -177889474 + L1P LINE L1 2814 5001 -1145 726 139 0 0 chr4 6399802 6399917 -177888745 + AluSp/q SINE Alu 193 307 -6 188 0 0 69 chr4 6399917 6399946 -177888716 + (GGA)n Simple_repeat Simple_repeat 1 27 0 37 70 0 0 chr4 6401207 6401250 -177887412 + AT_rich Low_complexity Low_complexity 1 43 0 213 194 0 0 chr4 6401460 6401496 -177887166 + (TG)n Simple_repeat Simple_repeat 1 36 0 4343 268 41 20 chr4 6401496 6402140 -177886522 - L1MEc LINE L1 -4318 2078 1449 203 0 0 36 chr4 6402140 6402168 -177886494 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 1141 196 61 88 chr4 6402172 6402468 -177886194 - AluJo SINE Alu -14 288 1 4343 268 41 20 chr4 6402468 6403413 -177885249 - L1MEc LINE L1 -4949 1447 450 382 333 7 0 chr4 6403430 6403577 -177885085 - L1MEc LINE L1 -6026 370 223 1684 171 171 16 chr4 6403623 6403992 -177884670 + MSTA LTR MaLR 1 426 -2 1488 203 51 60 chr4 6403995 6404429 -177884233 + MLT1D LTR MaLR 76 505 0 1866 244 26 2 chr4 6404431 6404891 -177883771 + MLT1D-int LTR MaLR 4 474 -897 1284 204 110 31 chr4 6404864 6405247 -177883415 - L1ME2 LINE L1 -100 6064 5652 * 235 164 46 46 chr4 6405796 6405948 -177882714 + (TA)n Simple_repeat Simple_repeat 1 152 0 943 273 94 59 chr4 6406180 6406605 -177882057 + MLT1J1 LTR MaLR 7 446 0 787 196 111 7 chr4 6406648 6406801 -177881861 + FAM SINE Alu 1 169 -6 35613 29 2 0 chr4 6406901 6411887 -177876775 + L1PA3 LINE L1 1161 6154 -1 964 286 23 0 chr4 6411858 6412162 -177876500 + L1M4 LINE L1 3928 4238 -1908 * 4827 66 11 1 chr4 6412312 6413351 -177875311 + L1PA7 LINE L1 5005 6154 0 209 122 0 24 chr4 6413692 6413733 -177874929 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 21 0 0 0 chr4 6414114 6414135 -177874527 + AT_rich Low_complexity Low_complexity 1 21 0 293 297 50 50 chr4 6414164 6414277 -177874385 - MIR SINE MIR -74 188 73 533 243 18 0 chr4 6414277 6414388 -177874274 - MER81 DNA DNA -1 113 1 293 297 50 50 chr4 6414388 6414456 -177874206 - MIR SINE MIR -188 74 7 188 317 0 37 chr4 6414478 6414560 -177874102 - MIR SINE MIR -163 99 21 2040 80 3 45 chr4 6414851 6415137 -177873525 + AluSx SINE Alu 1 274 -38 297 118 0 0 chr4 6415245 6415296 -177873366 + (TC)n Simple_repeat Simple_repeat 2 52 0 894 272 33 22 chr4 6415647 6415919 -177872743 + MLT1J LTR MaLR 11 285 -226 302 281 26 18 chr4 6415951 6416065 -177872597 + L1MEd LINE L1 693 807 -5312 260 288 25 0 chr4 6416076 6416156 -177872506 + MLT1J LTR MaLR 313 394 -117 2434 159 23 21 chr4 6416295 6416722 -177871940 + MSTB1 LTR MaLR 1 428 -4 323 271 189 0 chr4 6416942 6417064 -177871598 - MIR SINE MIR -1 261 117 242 231 68 60 chr4 6417062 6417179 -177871483 + L2 LINE L2 2861 2978 -294 * 578 206 48 0 chr4 6417213 6417359 -177871303 - MER53 DNA DNA -8 181 29 2280 117 0 0 chr4 6417374 6417683 -177870979 - AluSc SINE Alu 0 309 1 2168 124 7 7 chr4 6417717 6418024 -177870638 - AluSx SINE Alu -5 307 1 460 287 29 86 chr4 6418028 6418342 -177870320 + L2 LINE L2 2972 3267 -5 637 279 36 0 chr4 6418525 6418744 -177869918 + MIR SINE MIR 25 251 -11 192 301 122 97 chr4 6418756 6418911 -177869751 + L2 LINE L2 2846 2996 -276 2052 114 14 0 chr4 6418911 6419191 -177869471 + AluSg SINE Alu 1 284 -26 192 301 122 97 chr4 6419191 6419427 -177869235 + L2 LINE L2 2996 3247 -25 268 330 78 28 chr4 6419834 6419999 -177868663 - MIR SINE MIR -65 143 4 250 233 0 0 chr4 6420173 6420233 -177868429 + (TTCA)n Simple_repeat Simple_repeat 2 61 0 3440 234 58 28 chr4 6420893 6420923 -177867739 - MER45B DNA AcHobo -570 1011 983 4063 113 33 6 chr4 6420923 6421568 -177867094 + L1PB2 LINE L1 5482 6143 -8 3440 234 58 28 chr4 6421568 6421658 -177867004 - MER45B DNA AcHobo -598 983 897 1980 142 26 13 chr4 6421658 6421961 -177866701 + AluSx SINE Alu 1 307 -5 3440 234 58 28 chr4 6421961 6422764 -177865898 - MER45B DNA AcHobo -684 897 59 202 329 38 0 chr4 6423950 6424029 -177864633 - MIR SINE MIR -117 145 64 287 239 5 178 chr4 6424682 6424879 -177863783 - MLT1H LTR MaLR -375 174 12 343 309 20 26 chr4 6424943 6425095 -177863567 + MIR SINE MIR 47 197 -65 467 197 12 4 chr4 6425306 6425408 -177863254 + MER2 DNA MER2_type 1 101 -138 276 30 0 0 chr4 6425515 6425548 -177863114 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 458 171 45 0 chr4 6426327 6426415 -177862247 - MIR3 SINE MIR -53 155 64 216 0 0 0 chr4 6426432 6426456 -177862206 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 342 0 0 0 chr4 6426455 6426493 -177862169 + (CA)n Simple_repeat Simple_repeat 1 38 0 364 224 12 0 chr4 6427098 6427183 -177861479 + MIR SINE MIR 71 156 -106 243 61 0 0 chr4 6427723 6427756 -177860906 + (TC)n Simple_repeat Simple_repeat 1 33 0 2129 129 44 41 chr4 6428021 6428384 -177860278 - THE1B LTR MaLR 0 364 1 319 288 8 45 chr4 6428858 6428905 -177859757 - MIR3 SINE MIR -52 156 109 2048 143 12 70 chr4 6428905 6429319 -177859343 + MLT1B LTR MaLR 1 390 0 319 288 8 45 chr4 6429319 6429403 -177859259 - MIR3 SINE MIR -99 109 30 2218 101 0 20 chr4 6429585 6429891 -177858771 + AluSq SINE Alu 1 300 -13 435 282 65 77 chr4 6430124 6430372 -177858290 + MIR SINE MIR 15 259 -3 23 0 0 0 chr4 6430440 6430463 -177858199 + AT_rich Low_complexity Low_complexity 1 23 0 414 324 0 0 chr4 6431633 6431741 -177856921 - MER81 DNA DNA -6 108 1 474 259 22 22 chr4 6432100 6432239 -177856423 - MIR SINE MIR -118 144 6 248 232 101 0 chr4 6432553 6432622 -177856040 + MIR SINE MIR 117 192 -70 238 236 28 14 chr4 6432651 6432723 -177855939 - MIR SINE MIR -6 256 184 573 157 102 0 chr4 6432829 6432937 -177855725 - MER53 DNA DNA -68 121 3 776 173 161 0 chr4 6433356 6433518 -177855144 + MER5A DNA MER1_type 2 189 0 280 263 34 42 chr4 6434765 6434883 -177853779 - L2 LINE L2 -70 3243 3127 2856 239 31 50 chr4 6434975 6435429 -177853233 - L1ME1 LINE L1 -5 6161 5729 1702 154 48 0 chr4 6435429 6435702 -177852960 - AluJb SINE Alu -26 286 1 2856 239 31 50 chr4 6435702 6436136 -177852526 - L1ME1 LINE L1 -437 5729 5289 385 246 64 0 chr4 6436118 6436228 -177852434 - L1ME1 LINE L1 -1741 4405 4289 * 2085 99 18 0 chr4 6436360 6436633 -177852029 - AluSx SINE Alu -30 282 5 1589 127 0 27 chr4 6436641 6436841 -177851821 + Tigger4(Zombi) DNA MER2_type 2479 2672 -59 1919 140 64 17 chr4 6436841 6437199 -177851463 + THE1C LTR MaLR 1 375 0 1589 127 0 27 chr4 6437199 6437258 -177851404 + Tigger4(Zombi) DNA MER2_type 2672 2731 0 1125 253 111 84 chr4 6437277 6438063 -177850599 - HAL1 LINE L1 -1254 1253 447 330 210 0 25 chr4 6438243 6438324 -177850338 + MLT1C LTR MaLR 386 464 -3 282 266 9 101 chr4 6438771 6438880 -177849782 - MIR SINE MIR -74 134 36 1388 193 46 21 chr4 6439407 6439734 -177848928 + MLT1A1 LTR MaLR 31 365 0 270 145 0 157 chr4 6440365 6440448 -177848214 + MIR SINE MIR 107 176 -86 200 345 164 0 chr4 6440599 6440709 -177847953 + L2 LINE L2 3180 3307 -6 214 338 80 13 chr4 6441616 6441767 -177846895 + MIR SINE MIR 23 183 -79 237 33 0 0 chr4 6441815 6441845 -177846817 + (TG)n Simple_repeat Simple_repeat 2 31 0 364 224 0 13 chr4 6442698 6442774 -177845888 - AluJb SINE Alu 0 302 228 950 174 17 17 chr4 6442774 6442946 -177845716 - AluJb SINE Alu -140 172 1 569 312 45 0 chr4 6443213 6443415 -177845247 + MIR SINE MIR 1 211 -51 1386 222 58 51 chr4 6443434 6443885 -177844777 + MLT1D LTR MaLR 1 454 -51 338 133 17 0 chr4 6445546 6445606 -177843056 + MLT1D LTR MaLR 442 502 -3 662 157 33 0 chr4 6445828 6445949 -177842713 + MLT1D LTR MaLR 1 125 -380 1923 160 37 62 chr4 6445951 6446394 -177842268 + MLT2B2 LTR ERVL 3 414 0 420 147 0 15 chr4 6446398 6446466 -177842196 - MLT1E1 LTR MaLR -1 653 587 1832 209 27 8 chr4 6446469 6446838 -177841824 + MLT1D LTR MaLR 130 505 0 1661 205 67 14 chr4 6446931 6447302 -177841360 - MLT1E LTR MaLR 0 593 203 303 265 61 10 chr4 6447338 6447391 -177841271 - MLT1E LTR MaLR -490 103 54 1979 122 49 30 chr4 6447391 6447759 -177840903 - THE1C LTR MaLR 0 375 1 303 265 61 10 chr4 6447759 6447803 -177840859 - MLT1E LTR MaLR -539 54 1 432 255 102 13 chr4 6447908 6448065 -177840597 + MIR SINE MIR 41 211 -51 352 287 119 45 chr4 6448184 6448428 -177840234 + MLT1J LTR MaLR 5 266 -245 265 238 105 9 chr4 6448466 6448571 -177840091 + MLT1J LTR MaLR 347 461 -50 890 198 104 85 chr4 6449237 6449601 -177839061 - MLT1C LTR MaLR -96 371 1 267 274 161 32 chr4 6449633 6449943 -177838719 - MLT1K LTR MaLR -16 572 223 1605 239 67 16 chr4 6450440 6450876 -177837786 - MLT1C LTR MaLR 0 467 10 440 188 50 0 chr4 6450936 6451037 -177837625 + LTR16C LTR ERVL 385 490 -1 372 280 17 25 chr4 6451179 6451297 -177837365 - MIR SINE MIR -100 162 46 3878 161 38 56 chr4 6451552 6452195 -177836467 - L1MA7 LINE L1 -1 6290 5637 1932 140 15 82 chr4 6452195 6452595 -177836067 - THE1C LTR MaLR -2 373 1 3878 161 38 56 chr4 6452595 6452659 -177836003 - L1MA7 LINE L1 -654 5637 5573 2536 70 3 0 chr4 6452659 6452961 -177835701 - AluY SINE Alu -8 303 1 3878 161 38 56 chr4 6452961 6453092 -177835570 - L1MA7 LINE L1 -718 5573 5466 375 304 83 80 chr4 6453583 6454043 -177834619 - MLT1K LTR MaLR -22 566 106 404 241 12 0 chr4 6454134 6454217 -177834445 - HERV16 LTR ERVL -2072 2924 2841 1318 326 73 30 chr4 6454249 6455175 -177833487 - HERV16 LTR ERVL -2264 2732 1765 5647 160 28 29 chr4 6455255 6456727 -177831935 - L1MA4 LINE L1 -2 6298 4804 * 10385 177 16 3 chr4 6456726 6458783 -177829879 + L1 LINE L1 2628 4711 -1435 1103 130 0 0 chr4 6458783 6458983 -177829679 + AluSg/x SINE Alu 131 330 0 712 101 0 0 chr4 6458983 6459082 -177829580 + L1 LINE L1 4708 4806 -1340 1003 310 117 79 chr4 6459130 6460017 -177828645 - HERV16 LTR ERVL -3555 1441 748 2153 139 12 18 chr4 6460345 6460684 -177827978 + MER1B DNA MER1_type 1 337 0 383 162 0 15 chr4 6460752 6460820 -177827842 - MLT1A2 LTR MaLR 0 374 308 1645 112 75 0 chr4 6460820 6461061 -177827601 + AluSx SINE Alu 1 259 -53 1491 207 25 19 chr4 6461095 6461409 -177827253 - MLT1A2 LTR MaLR -58 316 1 471 348 65 0 chr4 6461411 6461612 -177827050 - HERV16 LTR ERVL -4761 235 22 431 250 47 8 chr4 6461619 6461747 -177826915 + MLT1A1 LTR MaLR 229 361 -4 1341 179 82 15 chr4 6462199 6462316 -177826346 + AluJo SINE Alu 1 109 -203 480 18 0 0 chr4 6462316 6462373 -177826289 + (CA)n Simple_repeat Simple_repeat 2 58 0 1341 179 82 15 chr4 6462373 6462523 -177826139 + AluJo SINE Alu 109 286 -26 779 172 208 37 chr4 6462671 6462902 -177825760 + MLT2B2 LTR ERVL 174 493 -22 392 307 114 6 chr4 6463148 6463314 -177825348 - MIR SINE MIR -75 187 4 348 321 84 11 chr4 6463969 6464159 -177824503 - MIR3 SINE MIR -2 206 3 739 298 69 40 chr4 6464647 6465094 -177823568 - LTR33 LTR ERVL 0 521 62 423 231 111 34 chr4 6465138 6465356 -177823306 + Charlie8 DNA MER1_type 83 1397 -1020 180 234 160 75 chr4 6465398 6465492 -177823170 - MIR SINE MIR -87 121 20 202 319 44 0 chr4 6466455 6466546 -177822116 + L2 LINE L2 3094 3188 -125 321 53 0 0 chr4 6466546 6466584 -177822078 + THE1C LTR MaLR 123 160 -215 * 550 186 105 24 chr4 6466572 6466696 -177821966 - THE1C LTR MaLR -241 134 1 6533 101 8 6 chr4 6466696 6467577 -177821085 - THE1C-int LTR MaLR 0 1580 698 2148 72 7 17 chr4 6467565 6467858 -177820804 - THE1C-int LTR MaLR -1290 290 1 * 2056 146 64 14 chr4 6467858 6468215 -177820447 - THE1C LTR MaLR 0 375 1 524 282 15 8 chr4 6468217 6468348 -177820314 + L2 LINE L2 3182 3313 0 219 358 123 12 chr4 6470650 6470812 -177817850 + MIR SINE MIR 79 258 -4 1088 117 0 134 chr4 6471103 6471326 -177817336 - 7SK RNA RNA 0 193 1 1663 140 59 0 chr4 6471973 6472244 -177816418 - AluSq SINE Alu -15 298 12 197 284 58 77 chr4 6472833 6472988 -177815674 + MIR3 SINE MIR 4 155 -53 372 308 6 38 chr4 6473485 6473642 -177815020 + MIR SINE MIR 45 191 -65 186 222 56 19 chr4 6473821 6473875 -177814787 + MIR3 SINE MIR 9 64 -144 2099 100 81 36 chr4 6473914 6474273 -177814389 + THE1C LTR MaLR 1 375 0 525 282 77 23 chr4 6474331 6474590 -177814072 - LTR16C LTR ERVL -4 487 215 197 269 39 0 chr4 6474800 6474852 -177813810 + MIR SINE MIR 209 262 0 327 235 15 91 chr4 6474871 6475003 -177813659 + MLT1L LTR MaLR 43 164 -451 5081 111 10 9 chr4 6475133 6476000 -177812662 - L1P3 LINE L1 -4549 1912 1051 5753 106 2 7 chr4 6476000 6476503 -177812159 + L1P LINE L1 1644 2143 -4003 3315 137 8 6 chr4 6476503 6477013 -177811649 + MER9 LTR ERVK 1 511 0 5753 106 2 7 chr4 6477013 6477341 -177811321 + L1P LINE L1 2143 2471 -3675 4118 141 34 23 chr4 6527430 6528127 -177760535 + MER44D DNA MER2_type 1 705 0 205 188 35 35 chr4 6528312 6528397 -177760265 + (TATAA)n Simple_repeat Simple_repeat 5 89 0 2811 78 54 29 chr4 6528430 6528838 -177759824 - L1PB2 LINE L1 -2 6149 5732 2087 174 50 21 chr4 6530107 6530486 -177758176 - MSTD LTR MaLR 0 396 7 269 282 26 0 chr4 6530541 6530619 -177758043 + MER102a DNA MER1_type 238 317 -13 222 323 50 20 chr4 6530730 6530829 -177757833 + MIR SINE MIR 52 153 -109 271 294 0 0 chr4 6530931 6530999 -177757663 + MIR SINE MIR 78 145 -63 181 200 44 111 chr4 6531138 6531228 -177757434 + L2 LINE L2 3228 3311 -2 311 346 43 21 chr4 6531442 6531596 -177757066 - L2 LINE L2 -15 3298 3138 2068 127 3 17 chr4 6531596 6531896 -177756766 + AluSx SINE Alu 1 296 -16 311 346 43 21 chr4 6531896 6531929 -177756733 - L2 LINE L2 -175 3138 3107 264 289 0 0 chr4 6531929 6532005 -177756657 - MLT1C LTR MaLR 0 467 392 786 127 11 33 chr4 6532230 6532411 -177756251 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 1212 136 99 113 chr4 6532419 6532721 -177755941 - AluJo SINE Alu -1 311 14 233 247 0 55 chr4 6532879 6532952 -177755710 + GA-rich Low_complexity Low_complexity 4 72 0 403 173 0 13 chr4 6533662 6533737 -177754925 + MIR SINE MIR 79 152 -56 213 279 0 93 chr4 6533810 6533896 -177754766 + L3 LINE CR1 1411 1488 -89 758 80 0 9 chr4 6533933 6534045 -177754617 + (TTCC)n Simple_repeat Simple_repeat 2 112 0 1933 137 9 40 chr4 6534045 6534367 -177754295 - AluSx SINE Alu 0 312 1 245 111 44 0 chr4 6534503 6534548 -177754114 + C-rich Low_complexity Low_complexity 3 49 0 360 286 100 55 chr4 6535015 6535572 -177753090 - L1ME3A LINE L1 -273 5897 5286 * 421 284 5 58 chr4 6535564 6535681 -177752981 - L1ME3A LINE L1 -2029 4117 4012 2674 122 11 3 chr4 6535681 6536042 -177752620 + THE1B LTR MaLR 1 364 0 421 284 5 58 chr4 6536042 6536114 -177752548 - L1ME3A LINE L1 -2134 4012 3938 1352 251 61 10 chr4 6536119 6536526 -177752136 - L1ME3A LINE L1 -1 6169 5742 865 245 116 4 chr4 6536548 6536781 -177751881 - L1ME3A LINE L1 -517 5653 5395 830 166 0 21 chr4 6536782 6536927 -177751735 + FLAM_C SINE Alu 1 142 -1 958 192 12 75 chr4 6537055 6537101 -177751561 - MER33 DNA MER1_type -2359 226 179 2066 93 8 0 chr4 6537101 6537369 -177751293 - AluSx SINE Alu -12 300 31 958 192 12 75 chr4 6537369 6537562 -177751100 - MER33 DNA MER1_type -2406 179 2 448 265 80 15 chr4 6537570 6537951 -177750711 - L1ME LINE L1 -656 5508 5107 278 154 51 8 chr4 6537961 6538078 -177750584 + (TA)n Simple_repeat Simple_repeat 1 122 0 777 126 20 16 chr4 6538102 6538611 -177750051 + (TA)n Simple_repeat Simple_repeat 1 511 0 26 0 0 0 chr4 6538611 6538637 -177750025 + AT_rich Low_complexity Low_complexity 1 26 0 354 304 66 28 chr4 6538695 6538876 -177749786 + L2 LINE L2 2005 2192 -1122 433 242 160 45 chr4 6538899 6539168 -177749494 - LTR50 LTR ERVL 0 795 496 645 191 77 55 chr4 6539275 6539458 -177749204 - LTR41 LTR ERVL -586 187 1 2175 125 0 0 chr4 6539485 6539780 -177748882 - AluSx SINE Alu -17 295 1 536 362 119 21 chr4 6539781 6540361 -177748301 + L2 LINE L2 2229 2865 -449 255 284 91 26 chr4 6540477 6540613 -177748049 + L2 LINE L2 2871 3009 -263 2367 120 38 44 chr4 6540747 6541113 -177747549 - THE1B LTR MaLR 0 364 1 220 362 0 19 chr4 6541113 6541218 -177747444 + L2 LINE L2 3136 3238 -34 266 31 0 0 chr4 6541396 6541428 -177747234 - L1PB3 LINE L1 -2 6152 6121 674 92 0 0 chr4 6541428 6541515 -177747147 - MSTA LTR MaLR 0 428 342 2140 125 117 6 chr4 6541615 6541975 -177746687 - MSTA LTR MaLR -28 400 1 356 23 0 0 chr4 6541995 6542039 -177746623 + MADE1 DNA Mariner 36 79 -1 290 54 0 143 chr4 6542049 6542105 -177746557 - MADE1 DNA Mariner -32 48 1 1599 149 32 0 chr4 6542105 6542354 -177746308 - L1PB3 LINE L1 -58 6096 5840 221 312 37 18 chr4 6542356 6542465 -177746197 - MIR SINE MIR -73 189 79 580 203 63 76 chr4 6542524 6542761 -177745901 + MER113 DNA MER1_type? 6 239 -282 546 191 8 63 chr4 6542782 6542908 -177745754 - L1MA9 LINE L1 -115 6197 6079 842 93 0 0 chr4 6543101 6543209 -177745453 - AluY SINE Alu -5 306 199 1091 213 30 0 chr4 6543421 6543656 -177745006 + MIR SINE MIR 6 247 -15 572 296 47 24 chr4 6543694 6543907 -177744755 + MIR SINE MIR 16 233 -29 589 258 76 15 chr4 6544418 6544616 -177744046 + MLT1B LTR MaLR 6 215 -175 * 1192 275 120 14 chr4 6544589 6545022 -177743640 - MER45B DNA AcHobo -560 480 2 559 242 136 70 chr4 6545369 6545988 -177742674 + L2 LINE L2 2545 3206 -107 2326 131 18 15 chr4 6545994 6546330 -177742332 + MER1B DNA MER1_type 1 337 0 407 320 8 8 chr4 6546354 6546476 -177742186 + L2 LINE L2 3178 3299 -14 210 71 0 0 chr4 6546477 6546505 -177742157 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 1014 274 123 33 chr4 6546518 6546942 -177741720 - MLT1K LTR MaLR -114 474 13 240 349 151 18 chr4 6546994 6547160 -177741502 + L2 LINE L2 3083 3270 -2 769 259 61 64 chr4 6548246 6548559 -177740103 + MLT1I LTR MaLR 10 321 -88 1268 164 33 109 chr4 6548582 6548751 -177739911 - AluJb SINE Alu 0 312 132 241 26 26 26 chr4 6548751 6548790 -177739872 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1268 164 33 109 chr4 6548790 6548804 -177739858 - AluJb SINE Alu -180 132 119 2107 95 0 0 chr4 6548804 6549077 -177739585 - AluSx SINE Alu -39 273 1 1268 164 33 109 chr4 6549077 6549221 -177739441 - AluJb SINE Alu -193 119 9 448 171 13 0 chr4 6549222 6549298 -177739364 + MLT1I LTR MaLR 333 409 0 971 255 92 84 chr4 6549312 6550006 -177738656 - L1MEc LINE L1 -2070 4145 3439 2145 112 3 0 chr4 6550006 6550292 -177738370 - AluSp SINE Alu -26 287 1 971 255 92 84 chr4 6550292 6550618 -177738044 - L1MEc LINE L1 -2776 3439 3117 636 314 87 22 chr4 6550660 6551523 -177737139 - L1MEc LINE L1 -4639 1757 839 303 293 121 57 chr4 6551948 6552105 -177736557 - L1MEc LINE L1 -5901 304 138 236 345 85 20 chr4 6552152 6552352 -177736310 + L2 LINE L2 1707 1919 -1395 1145 83 0 13 chr4 6552526 6552703 -177735959 - AluY SINE Alu 0 306 132 810 161 8 0 chr4 6552803 6552933 -177735729 - AluJo SINE Alu -177 135 5 374 259 46 8 chr4 6552938 6553069 -177735593 - MER103 DNA DNA -24 142 7 258 269 45 0 chr4 6553861 6553928 -177734734 - L2 LINE L2 -3 3310 3241 610 313 28 14 chr4 6553956 6554167 -177734495 - MIR SINE MIR -7 255 42 2219 74 0 14 chr4 6555191 6555488 -177733174 + AluY SINE Alu 1 293 -18 494 310 105 0 chr4 6555770 6555941 -177732721 + MIR SINE MIR 2 190 -72 383 223 106 11 chr4 6556144 6556238 -177732424 + L2 LINE L2 3210 3312 -1 554 306 19 0 chr4 6556318 6556478 -177732184 + MIR SINE MIR 96 258 -4 379 273 11 0 chr4 6556759 6556847 -177731815 - L2 LINE L2 0 3272 3184 4998 159 39 5 chr4 6556847 6557703 -177730959 + L1MC1 LINE L1 5415 6299 -34 1597 72 0 10 chr4 6557718 6557925 -177730737 - L1PA6 LINE L1 -1 6153 5949 375 289 90 74 chr4 6557959 6558336 -177730326 - L2 LINE L2 -78 3235 2853 448 200 90 44 chr4 6558959 6559111 -177729551 - MER63A DNA MER1_type 0 210 50 295 146 0 0 chr4 6559162 6559203 -177729459 - MER63A DNA MER1_type -169 41 1 389 338 46 0 chr4 6559204 6559355 -177729307 + MIR SINE MIR 53 210 -52 211 280 187 9 chr4 6560238 6560345 -177728317 + L2 LINE L2 3121 3246 -26 205 384 59 27 chr4 6560377 6560596 -177728066 - L2 LINE L2 -53 3219 2994 * 453 309 8 8 chr4 6560567 6560690 -177727972 + L2 LINE L2 3150 3272 0 390 325 69 46 chr4 6560695 6561094 -177727568 - L2 LINE L2 -262 3010 2595 1809 171 53 13 chr4 6561659 6562039 -177726623 - L1MA9 LINE L1 0 6312 5918 325 310 8 23 chr4 6562445 6562574 -177726088 - MIR SINE MIR -62 146 20 349 268 109 91 chr4 6563128 6563393 -177725269 + L2 LINE L2 3036 3305 -8 196 291 89 0 chr4 6563476 6563555 -177725107 + L2 LINE L2 3137 3222 -50 2529 125 48 17 chr4 6563721 6564136 -177724526 - MSTA LTR MaLR 0 428 1 637 144 0 65 chr4 6564146 6564285 -177724377 - FRAM SINE Alu -4 172 43 1948 122 7 0 chr4 6564499 6564785 -177723877 + AluSx SINE Alu 1 288 -24 910 284 107 3 chr4 6564882 6565237 -177723425 + MER113 DNA MER1_type? 20 411 -110 238 182 0 23 chr4 6565371 6565415 -177723247 + CT-rich Low_complexity Low_complexity 3 45 0 225 0 0 0 chr4 6565423 6565448 -177723214 + (T)n Simple_repeat Simple_repeat 1 25 0 2061 106 0 0 chr4 6565529 6565853 -177722809 + AluSg SINE Alu 1 324 0 228 217 51 0 chr4 6566173 6566240 -177722422 - Charlie8 DNA MER1_type -2 2415 1345 254 328 38 15 chr4 6566531 6566662 -177722000 + L2 LINE L2 3075 3208 -105 320 263 41 36 chr4 6566819 6567013 -177721649 - L1M4 LINE L1 -2164 3982 3788 256 283 157 18 chr4 6567274 6567440 -177721222 - L1ME LINE L1 -438 5683 5495 283 149 15 60 chr4 6568108 6568146 -177720516 - Tigger3(Golem) DNA MER2_type -138 2900 2865 2830 3 0 0 chr4 6568146 6568458 -177720204 + AluYb8 SINE Alu 1 312 -6 283 149 15 60 chr4 6568458 6568486 -177720176 - Tigger3(Golem) DNA MER2_type -173 2865 2837 447 228 33 0 chr4 6569061 6569153 -177719509 - MLT1J LTR MaLR -321 190 96 273 284 0 14 chr4 6569165 6569239 -177719423 + L2 LINE L2 3200 3272 0 244 309 128 0 chr4 6569330 6569424 -177719238 - MIR SINE MIR -3 259 154 1570 266 93 70 chr4 6569476 6569949 -177718713 + L2 LINE L2 2061 2522 -791 1578 181 3 19 chr4 6569949 6570259 -177718403 + AluJb SINE Alu 5 309 -3 1570 266 93 70 chr4 6570259 6570770 -177717892 + L2 LINE L2 2522 3066 -247 3510 111 14 2 chr4 6570770 6571277 -177717385 - L1PA8A LINE L1 -1530 4616 4104 6487 88 2 2 chr4 6571290 6572799 -177715863 + L1PA8A LINE L1 4596 6130 -1 237 310 14 0 chr4 6572900 6572971 -177715691 - L2 LINE L2 0 3313 3242 768 198 213 55 chr4 6573095 6573443 -177715219 + MLT1C LTR MaLR 7 409 -58 2032 114 19 13 chr4 6573443 6573618 -177715044 - AluSx SINE Alu -3 309 130 2058 113 17 3 chr4 6573618 6573918 -177714744 - AluSq SINE Alu -9 304 1 2032 114 19 13 chr4 6573918 6574049 -177714613 - AluSx SINE Alu -182 130 1 462 256 125 30 chr4 6574054 6574222 -177714440 + MIR SINE MIR 48 231 -31 1144 97 0 0 chr4 6574510 6574664 -177713998 - AluSg/x SINE Alu -4 306 153 2109 85 64 5 chr4 6574675 6575036 -177713626 - LTR7 LTR ERV1 0 450 25 1037 139 6 6 chr4 6575036 6575208 -177713454 - AluSq SINE Alu -141 172 1 490 264 35 39 chr4 6575221 6575405 -177713257 - MIR SINE MIR -72 136 3 419 229 50 57 chr4 6575503 6575643 -177713019 - MIR SINE MIR -10 252 114 252 0 0 0 chr4 6575733 6575761 -177712901 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 270 193 72 48 chr4 6576244 6576327 -177712335 + MIR3 SINE MIR 87 171 -37 204 330 0 10 chr4 6576727 6576824 -177711838 + CT-rich Low_complexity Low_complexity 1 96 0 392 243 14 62 chr4 6577910 6578054 -177710608 + MIR SINE MIR 80 216 -46 195 293 98 9 chr4 6578158 6578346 -177710316 - MIR SINE MIR -2 260 12 2116 79 14 0 chr4 6579022 6579337 -177709325 + AluSq SINE Alu 1 319 0 350 330 75 74 chr4 6579463 6580017 -177708645 - L2 LINE L2 0 3272 2715 412 209 9 43 chr4 6580240 6580355 -177708307 + HsTC2 DNA Tc2 1780 1890 -8 653 264 22 33 chr4 6580827 6581009 -177707653 - MIR SINE MIR -48 214 35 185 194 0 0 chr4 6581092 6581128 -177707534 - L2 LINE L2 -16 3256 3221 438 265 75 90 chr4 6581200 6581532 -177707130 - MLT1J LTR MaLR -75 436 110 543 232 113 33 chr4 6581564 6581715 -177706947 + MER5A DNA MER1_type 1 163 -26 446 255 47 0 chr4 6582139 6582245 -177706417 + MER81 DNA DNA 2 112 -2 401 277 37 28 chr4 6583154 6583351 -177705311 - MIR SINE MIR -6 256 18 269 295 13 26 chr4 6584068 6584146 -177704516 - L2 LINE L2 0 3272 3196 455 294 88 44 chr4 6584152 6584424 -177704238 - L2 LINE L2 0 3313 3030 374 275 181 28 chr4 6584503 6584856 -177703806 - L2 LINE L2 -462 2852 2446 191 188 0 0 chr4 6586141 6586173 -177702489 - MIR SINE MIR -107 155 124 776 153 11 17 chr4 6586312 6586489 -177702173 + GA-rich Low_complexity Low_complexity 3 178 0 290 203 16 0 chr4 6586673 6586737 -177701925 + MIR SINE MIR 61 125 -137 402 268 109 55 chr4 6586737 6586957 -177701705 + Charlie8 DNA MER1_type 1 232 -2185 226 383 9 9 chr4 6587106 6587221 -177701441 + L2 LINE L2 2946 3060 -212 185 150 0 25 chr4 6587328 6587368 -177701294 + (CA)n Simple_repeat Simple_repeat 2 40 0 1753 179 152 29 chr4 6587437 6587885 -177700777 + MLT1D LTR MaLR 1 503 -2 353 282 52 69 chr4 6588086 6588260 -177700402 + MIR SINE MIR 20 190 -72 1040 270 72 17 chr4 6588570 6589015 -177699647 + MLT1H LTR MaLR 28 549 0 587 278 139 10 chr4 6589714 6589923 -177698739 + MIR SINE MIR 20 255 -7 22 0 0 0 chr4 6590471 6590493 -177698169 + AT_rich Low_complexity Low_complexity 1 22 0 269 224 37 82 chr4 6590703 6590837 -177697825 - L1ME4a LINE L1 -21 6100 5973 241 349 9 0 chr4 6591052 6591158 -177697504 + L2 LINE L2 3206 3312 -1 1890 150 0 0 chr4 6591181 6591468 -177697194 - AluSx SINE Alu -25 287 1 285 318 56 24 chr4 6591765 6591891 -177696771 + L2 LINE L2 3142 3271 -1 1331 126 0 11 chr4 6591950 6592141 -177696521 - Tigger2 DNA MER2_type -1 2717 2529 1562 181 0 7 chr4 6592149 6592425 -177696237 - AluJo SINE Alu -33 279 6 3414 128 65 5 chr4 6592428 6592982 -177695680 - Tigger2 DNA MER2_type -1572 1146 560 821 206 16 27 chr4 6593098 6593282 -177695380 + MLT1C LTR MaLR 286 467 0 286 313 52 10 chr4 6593312 6593408 -177695254 - MIR3 SINE MIR 0 208 109 206 289 52 41 chr4 6593823 6593920 -177694742 - L3 LINE CR1 -1471 106 9 290 256 35 0 chr4 6594111 6594197 -177694465 + MLT1K LTR MaLR 153 241 -347 1814 234 48 87 chr4 6594386 6595009 -177693653 + L1ME3A LINE L1 5546 6144 -26 313 318 129 30 chr4 6595036 6595269 -177693393 + L3 LINE CR1 1191 1446 -131 711 299 45 9 chr4 6595872 6596096 -177692566 - MIR SINE MIR -29 233 2 297 311 112 13 chr4 6596144 6596295 -177692367 - MIR SINE MIR -52 156 14 273 311 46 48 chr4 6596541 6596707 -177691955 + MIR SINE MIR 49 216 -46 458 202 67 29 chr4 6596843 6596947 -177691715 - L2 LINE L2 -8 3305 3198 342 269 175 29 chr4 6597004 6597175 -177691487 - MIR SINE MIR -14 248 53 213 225 14 28 chr4 6597302 6597373 -177691289 + (CAGGT)n Simple_repeat Simple_repeat 5 74 0 977 275 116 40 chr4 6598384 6598644 -177690018 - L2 LINE L2 0 3313 3074 1082 164 19 14 chr4 6598644 6598851 -177689811 - MER3 DNA MER1_type 0 209 2 977 275 116 40 chr4 6598851 6599331 -177689331 - L2 LINE L2 -239 3074 2516 373 269 71 39 chr4 6599333 6599515 -177689147 - MLT1L LTR MaLR -90 525 338 2248 178 17 19 chr4 6600321 6600691 -177687971 + MLT2D LTR ERVL 1 371 -43 417 81 0 0 chr4 6600691 6600753 -177687909 + (TCTG)n Simple_repeat Simple_repeat 3 64 0 2248 178 17 19 chr4 6600753 6600797 -177687865 + MLT2D LTR ERVL 371 414 0 407 288 72 0 chr4 6601838 6601977 -177686685 + MIR SINE MIR 111 259 -3 459 52 0 0 chr4 6602378 6602436 -177686226 + (TCCA)n Simple_repeat Simple_repeat 1 58 0 362 329 56 31 chr4 6602439 6602600 -177686062 - L2 LINE L2 -22 3250 3086 781 223 53 75 chr4 6602959 6603278 -177685384 - L1ME2 LINE L1 -10 6390 6079 676 220 81 52 chr4 6603279 6603661 -177685001 - L1ME2 LINE L1 -812 5570 5178 1660 209 37 92 chr4 6603727 6604301 -177684361 - MLT2B3 LTR ERVL -12 542 1 3859 253 51 30 chr4 6604302 6605905 -177682757 - L1ME2 LINE L1 -1266 5116 3480 1973 251 58 9 chr4 6605912 6606685 -177681977 - L1ME2 LINE L1 -3065 3317 2507 484 270 25 15 chr4 6606745 6606945 -177681717 - L1ME2 LINE L1 -3804 2578 2377 775 308 25 46 chr4 6607086 6607855 -177680807 - L1ME2 LINE L1 -4243 2320 1416 1010 284 48 13 chr4 6607875 6608351 -177680311 - L1ME2 LINE L1 -5231 1141 649 271 258 2 28 chr4 6609389 6609467 -177679195 + MIR SINE MIR 78 154 -54 286 203 0 0 chr4 6609987 6610046 -177678616 + MER96 DNA MER1_type? 117 175 0 729 318 59 3 chr4 6610063 6610384 -177678278 - LTR16C LTR ERVL -9 482 144 225 222 69 42 chr4 6610643 6610715 -177677947 - MIR SINE MIR -81 181 108 205 347 59 59 chr4 6610883 6611102 -177677560 + MIR SINE MIR 9 227 -35 743 269 43 18 chr4 6611138 6611813 -177676849 + L1M4 LINE L1 3921 4808 -1338 1995 124 3 10 chr4 6611869 6612175 -177676487 - AluSq SINE Alu -9 304 1 213 344 131 0 chr4 6612370 6612492 -177676170 + L2 LINE L2 3132 3269 -3 225 333 82 41 chr4 6612582 6612801 -177675861 + L2 LINE L2 2750 2977 -337 458 316 80 30 chr4 6613926 6614163 -177674499 + L2 LINE L2 2243 2491 -823 1218 275 92 49 chr4 6614318 6615893 -177672769 - L1MEc LINE L1 -3372 2708 1001 225 94 0 0 chr4 6615893 6615925 -177672737 + (TG)n Simple_repeat Simple_repeat 1 32 0 1218 275 92 49 chr4 6615925 6616292 -177672370 - L1MEc LINE L1 -5079 1001 651 252 235 0 0 chr4 6616398 6616466 -177672196 - L1MEc LINE L1 -5162 908 841 273 273 0 122 chr4 6616640 6616812 -177671850 - L1MEc LINE L1 -5551 519 369 353 217 11 11 chr4 6617603 6617695 -177670967 - MLT1G LTR MaLR 0 590 499 373 295 30 42 chr4 6617995 6618232 -177670430 - L1ME LINE L1 -298 5823 5590 327 323 24 8 chr4 6618775 6618899 -177669763 + L2 LINE L2 3187 3312 -1 231 323 32 0 chr4 6619141 6619234 -177669428 - MER117 DNA MER1_type -87 110 15 927 286 78 30 chr4 6619552 6620014 -177668648 - MLT1L LTR MaLR -9 606 123 431 304 46 11 chr4 6620858 6621121 -177667541 - L1ME LINE L1 -301 5820 5549 1259 180 0 86 chr4 6621428 6621755 -177666907 - L1MA9 LINE L1 -277 6035 5737 * 3300 250 62 34 chr4 6621754 6623020 -177665642 - L1M2 LINE L1 -4469 1742 456 609 278 140 36 chr4 6623205 6623683 -177664979 - L1ME4a LINE L1 -1 6120 5593 391 289 71 47 chr4 6623868 6624079 -177664583 + MIR SINE MIR 35 250 -12 1973 149 3 3 chr4 6624251 6624547 -177664115 - AluSx SINE Alu -16 296 1 470 260 133 17 chr4 6624827 6625008 -177663654 + MIR SINE MIR 47 248 -14 205 176 0 0 chr4 6625108 6625142 -177663520 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 253 331 99 8 chr4 6625359 6625480 -177663182 + L2 LINE L2 3171 3302 -11 375 273 123 68 chr4 6625668 6625961 -177662701 + LTR16A1 LTR ERVL 147 455 -2 276 300 0 0 chr4 6626102 6626182 -177662480 - MIR SINE MIR -70 138 59 225 19 0 113 chr4 6626200 6626253 -177662409 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 2249 126 0 0 chr4 6626259 6626568 -177662094 - AluSg SINE Alu 0 310 2 2246 181 22 84 chr4 6626673 6627220 -177661442 + MLT2B2 LTR ERVL 3 515 0 261 0 0 0 chr4 6627505 6627534 -177661128 + (TG)n Simple_repeat Simple_repeat 1 29 0 640 290 6 0 chr4 6628801 6628977 -177659685 + MER58A DNA MER1_type 3 179 -45 2488 113 5 24 chr4 6629022 6629393 -177659269 + THE1B LTR MaLR 1 364 0 597 178 0 52 chr4 6629794 6629929 -177658733 - MLT1I LTR MaLR -2 407 280 303 325 180 0 chr4 6630228 6630422 -177658240 - MIR SINE MIR -13 249 21 1836 193 0 7 chr4 6631020 6631325 -177657337 - AluJo SINE Alu -9 303 1 336 161 0 0 chr4 6632005 6632067 -177656595 + CT-rich Low_complexity Low_complexity 6 67 0 243 313 87 35 chr4 6632365 6632480 -177656182 + L2 LINE L2 3127 3247 -25 417 224 9 19 chr4 6632599 6632706 -177655956 - AluJb SINE Alu -14 298 193 372 252 57 32 chr4 6632819 6632942 -177655720 + L2 LINE L2 2622 2747 -567 409 281 104 48 chr4 6633330 6633584 -177655078 - L1M4 LINE L1 -918 5228 4990 2237 115 131 11 chr4 6633584 6633966 -177654696 + MSTA LTR MaLR 1 428 0 409 281 104 48 chr4 6633966 6634174 -177654488 - L1M4 LINE L1 -1156 4990 4740 335 298 63 99 chr4 6635287 6635589 -177653073 - L3 LINE CR1 -2 1575 1285 1012 191 5 11 chr4 6635622 6635811 -177652851 - MER5A DNA MER1_type -1 188 1 330 300 67 110 chr4 6635840 6636257 -177652405 - L2 LINE L2 -39 3233 2835 470 274 20 13 chr4 6637648 6637801 -177650861 - MLT1I LTR MaLR -399 156 3 243 250 0 0 chr4 6637803 6637855 -177650807 - L2 LINE L2 -599 2715 2664 287 348 129 0 chr4 6637970 6638171 -177650491 - L2 LINE L2 -608 2706 2480 201 292 135 0 chr4 6639209 6639298 -177649364 - MIR SINE MIR -141 121 21 483 339 81 30 chr4 6639923 6640221 -177648441 - L2 LINE L2 0 3272 2960 359 331 140 29 chr4 6640257 6640535 -177648127 - L2 LINE L2 -450 2864 2556 923 212 33 113 chr4 6641298 6641340 -177647322 + MLT1A1 LTR MaLR 1 45 -320 1724 111 0 0 chr4 6641340 6641565 -177647097 + AluSc SINE Alu 77 301 -8 923 212 33 113 chr4 6641565 6641919 -177646743 + MLT1A1 LTR MaLR 45 365 0 6880 209 65 35 chr4 6641919 6643220 -177645442 + MLT1A1-int LTR MaLR 1 1365 -370 2480 69 0 13 chr4 6643220 6643524 -177645138 + AluY SINE Alu 1 300 -11 6880 209 65 35 chr4 6643524 6643907 -177644755 + MLT1A1-int LTR MaLR 1365 1735 0 254 297 79 10 chr4 6644518 6644619 -177644043 + MIR SINE MIR 150 257 -5 435 228 24 0 chr4 6644702 6644825 -177643837 - Charlie1 DNA MER1_type 0 2761 2636 1974 115 44 0 chr4 6644825 6645122 -177643540 + AluSx SINE Alu 1 309 0 349 186 0 0 chr4 6645176 6645235 -177643427 + MER44D DNA MER2_type 2 60 -645 2481 196 24 29 chr4 6646037 6646589 -177642073 + MER44D DNA MER2_type 2 605 0 3756 275 119 22 chr4 6646596 6648114 -177640548 - Charlie1 DNA MER1_type -180 2581 917 1117 114 14 55 chr4 6648122 6648231 -177640431 - Tigger1 DNA MER2_type -8 2410 2313 2121 125 3 0 chr4 6648231 6648527 -177640135 + AluSq SINE Alu 1 297 -16 1117 114 14 55 chr4 6648527 6648637 -177640025 - Tigger1 DNA MER2_type -105 2313 2200 584 211 0 32 chr4 6648633 6648756 -177639906 - Tigger1 DNA MER2_type -2279 139 21 * 1801 212 76 58 chr4 6648753 6648846 -177639816 - Charlie1 DNA MER1_type -1832 929 839 616 157 20 0 chr4 6648846 6648948 -177639714 + L1PB4 LINE L1 6041 6144 -12 1801 212 76 58 chr4 6648948 6649529 -177639133 - Charlie1 DNA MER1_type -1922 839 243 831 151 0 22 chr4 6649529 6649668 -177638994 - AluSp/q SINE Alu -4 309 174 724 229 82 26 chr4 6649668 6649724 -177638938 - Charlie1 DNA MER1_type -2509 252 201 2317 113 3 0 chr4 6649724 6650035 -177638627 - AluSx SINE Alu 0 312 1 724 229 82 26 chr4 6650035 6650209 -177638453 - Charlie1 DNA MER1_type -2560 201 9 243 232 219 66 chr4 6650700 6650851 -177637811 + L2 LINE L2 3099 3272 0 2067 142 0 13 chr4 6650875 6651191 -177637471 + AluSx SINE Alu 1 312 0 402 273 8 0 chr4 6651523 6651644 -177637018 - L2 LINE L2 -1 3271 3150 1261 212 117 40 chr4 6651664 6652117 -177636545 - Charlie4a DNA MER1_type -20 488 1 355 285 12 12 chr4 6652411 6652576 -177636086 + L1ME4a LINE L1 5705 5869 -252 24 0 0 0 chr4 6652827 6652851 -177635811 + AT_rich Low_complexity Low_complexity 1 24 0 273 345 152 0 chr4 6653178 6653369 -177635293 + MIR SINE MIR 15 234 -28 380 185 85 85 chr4 6653389 6653519 -177635143 - MER103 DNA DNA -34 132 3 3251 240 83 20 chr4 6653661 6654489 -177634173 + L1MB7 LINE L1 -254 625 -5655 3149 233 66 17 chr4 6654476 6656320 -177632342 + L1MB7 LINE L1 1177 3215 -3167 * 1222 91 22 4 chr4 6656317 6656589 -177632073 + L1MA2 LINE L1 5909 6224 -80 * 1523 116 13 0 chr4 6656589 6656822 -177631840 + L1MA2 LINE L1 6069 6304 0 2243 252 18 31 chr4 6656829 6657270 -177631392 + L1MB7 LINE L1 3199 3629 -2753 6307 71 8 21 chr4 6657270 6658431 -177630231 - L1PA8A LINE L1 0 6131 5007 2311 86 41 0 chr4 6658431 6658723 -177629939 - AluY SINE Alu -7 304 1 6307 71 8 21 chr4 6658723 6658936 -177629726 - L1PA8A LINE L1 -1124 5007 4793 2243 252 18 31 chr4 6658936 6659213 -177629449 + L1MB7 LINE L1 3629 3908 -2474 3735 184 47 34 chr4 6659219 6660268 -177628394 + L1MB7 LINE L1 5313 6369 -51 1353 163 50 48 chr4 6660268 6660309 -177628353 - MSTA LTR MaLR 0 364 325 2309 99 0 10 chr4 6660309 6660621 -177628041 + AluSx SINE Alu 1 309 -3 1353 163 50 48 chr4 6660621 6660951 -177627711 - MSTA LTR MaLR -39 325 1 2587 142 36 11 chr4 6661057 6661502 -177627160 + Tigger2 DNA MER2_type 3 458 -2260 881 19 9 0 chr4 6661502 6661608 -177627054 + L1PA4 LINE L1 5872 5978 -177 315 102 0 85 chr4 6661710 6661769 -177626893 + Alu SINE Alu 242 295 -6 969 210 210 4 chr4 6661802 6662074 -177626588 - MLT1D LTR MaLR 0 505 178 1152 150 117 0 chr4 6662074 6662287 -177626375 - L1PA15 LINE L1 -11 6154 5917 * 1708 117 29 4 chr4 6662267 6662541 -177626121 + L1PA15 LINE L1 5624 5904 -261 753 214 60 11 chr4 6662541 6662723 -177625939 - MLT1D LTR MaLR -314 191 1 672 315 25 36 chr4 6662745 6663137 -177625525 - L2 LINE L2 -222 3091 2703 960 261 54 51 chr4 6664125 6664682 -177623980 + L2 LINE L2 2739 3308 -5 210 232 54 0 chr4 6664816 6664872 -177623790 + MIR SINE MIR 129 187 -75 21 0 0 0 chr4 6665318 6665339 -177623323 + AT_rich Low_complexity Low_complexity 1 21 0 1438 230 68 20 chr4 6666275 6666464 -177622198 - MLT1C LTR MaLR 0 467 289 2796 94 3 0 chr4 6666464 6666827 -177621835 - THE1B LTR MaLR 0 364 1 1438 230 68 20 chr4 6666827 6667033 -177621629 - MLT1C LTR MaLR -178 289 53 211 304 0 0 chr4 6668241 6668297 -177620365 + GA-rich Low_complexity Low_complexity 2 57 0 848 279 66 0 chr4 6668344 6668616 -177620046 + L1M4 LINE L1 4671 4960 -1186 1483 246 46 7 chr4 6669213 6669646 -177619016 - MLT1E2 LTR MaLR 0 626 138 191 235 0 29 chr4 6669824 6669892 -177618770 + (CATA)n Simple_repeat Simple_repeat 1 66 0 254 228 0 76 chr4 6670553 6670645 -177618017 + MIR SINE MIR 164 248 -14 183 80 0 0 chr4 6670696 6670721 -177617941 + (TGG)n Simple_repeat Simple_repeat 1 25 0 2086 170 18 5 chr4 6670730 6671113 -177617549 + MLT1B LTR MaLR 1 388 -2 879 189 0 8 chr4 6671867 6672132 -177616530 + (TGAG)n Simple_repeat Simple_repeat 1 262 0 858 175 0 0 chr4 6672140 6672317 -177616345 + (TGAA)n Simple_repeat Simple_repeat 3 179 0 759 189 0 0 chr4 6672323 6672539 -177616123 + (TGAG)n Simple_repeat Simple_repeat 1 216 0 427 278 67 51 chr4 6672941 6673254 -177615408 + L2 LINE L2 2940 3257 -56 284 295 11 11 chr4 6673263 6673358 -177615304 + (CATATA)n Simple_repeat Simple_repeat 5 99 0 2007 106 81 34 chr4 6673372 6673729 -177614933 + THE1C LTR MaLR 2 375 0 280 199 18 41 chr4 6673770 6673941 -177614721 + (CATATA)n Simple_repeat Simple_repeat 2 168 0 229 220 0 0 chr4 6673949 6673999 -177614663 - L1MC4 LINE L1 -1341 6701 6652 290 209 18 45 chr4 6674034 6674166 -177614496 + (CATATA)n Simple_repeat Simple_repeat 1 128 0 189 0 0 0 chr4 6675137 6675158 -177613504 + (A)n Simple_repeat Simple_repeat 1 21 0 448 270 101 64 chr4 6675163 6675459 -177613203 - L2 LINE L2 -88 3225 2919 223 218 55 0 chr4 6675489 6675544 -177613118 + L2 LINE L2 3201 3258 -14 229 234 172 0 chr4 6675622 6675686 -177612976 + MIR SINE MIR 48 122 -140 2128 151 29 0 chr4 6676415 6676793 -177611869 - MLT1B LTR MaLR -1 389 1 283 169 0 34 chr4 6677241 6677300 -177611362 - MLT2D LTR ERVL 0 520 464 229 150 0 0 chr4 6677279 6677319 -177611343 + LTR66 LTR ERVL 396 435 -175 * 320 253 38 0 chr4 6677320 6677399 -177611263 + L1MC4 LINE L1 6613 6694 -1348 342 242 0 42 chr4 6677403 6677498 -177611164 + L1MC4 LINE L1 6613 6703 -1339 315 269 0 21 chr4 6677501 6677594 -177611068 + L1MC4 LINE L1 6613 6703 -1339 216 185 0 0 chr4 6677596 6677650 -177611012 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 1292 235 34 6 chr4 6677682 6678005 -177610657 - MLT2D LTR ERVL -82 332 1 277 266 0 0 chr4 6678145 6678209 -177610453 - MIR SINE MIR -80 182 119 416 305 134 21 chr4 6678482 6678810 -177609852 - L2 LINE L2 0 3313 2949 222 313 16 0 chr4 6678954 6679018 -177609644 + L2 LINE L2 3203 3267 -5 367 269 60 15 chr4 6679129 6679263 -177609399 - MLT1L LTR MaLR 0 615 476 262 252 33 105 chr4 6679253 6679461 -177609201 - MLT1J LTR MaLR -185 391 212 * 387 0 0 0 chr4 6681376 6681419 -177607243 + (TG)n Simple_repeat Simple_repeat 2 44 0 1406 221 30 29 chr4 6681949 6682324 -177606338 - MLT1C LTR MaLR -22 604 69 692 251 16 5 chr4 6682324 6682511 -177606151 - MLT1A2 LTR MaLR 0 374 186 251 227 120 0 chr4 6682524 6682599 -177606063 - MIR SINE MIR -129 133 50 263 270 81 18 chr4 6682794 6682905 -177605757 - MIR3 SINE MIR -76 132 15 254 173 0 19 chr4 6684145 6684197 -177604465 + MIR SINE MIR 106 156 -106 1536 244 73 5 chr4 6684384 6684794 -177603868 + MLT1C LTR MaLR 21 458 -9 276 304 144 31 chr4 6685222 6685416 -177603246 + MIR SINE MIR 31 246 -16 936 288 104 18 chr4 6685474 6685926 -177602736 - LTR16C LTR ERVL 0 491 1 301 303 42 48 chr4 6685944 6686109 -177602553 + L2 LINE L2 3109 3272 0 225 244 0 0 chr4 6687266 6687311 -177601351 + L2 LINE L2 3213 3257 -15 448 259 85 80 chr4 6687785 6688183 -177600479 - L1ME4a LINE L1 -45 6076 5677 43999 45 3 0 chr4 6688306 6694433 -177594229 - L1PA4 LINE L1 0 6155 15 2229 141 0 0 chr4 6694436 6694741 -177593921 - AluSq SINE Alu -8 305 1 255 241 45 54 chr4 6694913 6695025 -177593637 + MIR SINE MIR 81 191 -71 2100 144 32 29 chr4 6695098 6695472 -177593190 - THE1C LTR MaLR 0 375 1 10256 126 37 3 chr4 6695472 6697000 -177591662 - THE1C-int LTR MaLR 0 1580 1 2178 123 24 39 chr4 6697000 6697381 -177591281 - THE1C LTR MaLR 0 375 1 1110 123 10 62 chr4 6697525 6697658 -177591004 - Tigger1 DNA MER2_type -1236 1182 1061 2256 105 3 13 chr4 6697658 6697973 -177590689 + AluSp SINE Alu 1 312 -1 1110 123 10 62 chr4 6697973 6698034 -177590628 - Tigger1 DNA MER2_type -1357 1061 998 448 161 62 0 chr4 6698041 6698122 -177590540 - Tigger1 DNA MER2_type -2062 356 271 4937 147 6 5 chr4 6698123 6698903 -177589759 - Tigger1 DNA MER2_type -1422 996 216 388 108 82 13 chr4 6699046 6699204 -177589458 + (TAGA)n Simple_repeat Simple_repeat 4 172 0 246 279 105 0 chr4 6699286 6699372 -177589290 - MLT1K LTR MaLR -7 581 487 253 247 155 0 chr4 6699406 6699503 -177589159 - MLT1K LTR MaLR -181 407 296 267 295 29 79 chr4 6699522 6699661 -177589001 - MLT1K LTR MaLR -413 175 44 269 223 308 2 chr4 6699960 6700081 -177588581 - MIR SINE MIR -105 157 2 189 321 0 0 chr4 6700664 6700720 -177587942 + MIR SINE MIR 30 85 -177 811 258 148 27 chr4 6700724 6700907 -177587755 + MLT1A2 LTR MaLR 1 160 -214 351 0 0 0 chr4 6700907 6700946 -177587716 + (CA)n Simple_repeat Simple_repeat 2 40 0 811 258 148 27 chr4 6700946 6701092 -177587570 + MLT1A2 LTR MaLR 160 370 -4 7307 128 34 16 chr4 6701119 6702029 -177586633 - Tigger1 DNA MER2_type 0 2418 1481 2356 95 10 0 chr4 6702029 6702335 -177586327 - AluSx SINE Alu -3 309 1 7307 128 34 16 chr4 6702335 6702588 -177586074 - Tigger1 DNA MER2_type -937 1481 1234 3277 107 32 6 chr4 6702780 6703246 -177585416 + MER1A DNA MER1_type 52 529 0 529 266 101 35 chr4 6703292 6703649 -177585013 - L1MC4a LINE L1 -621 7234 6884 1159 282 112 22 chr4 6703659 6704212 -177584450 - L1ME3A LINE L1 -4 6166 5564 463 291 89 24 chr4 6704197 6704444 -177584218 - L1ME3A LINE L1 -2448 3698 3436 * 217 325 26 26 chr4 6704931 6705048 -177583614 - MIR3 SINE MIR -2 206 90 186 103 0 0 chr4 6705054 6705083 -177583579 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 6575 197 25 20 chr4 6705254 6707540 -177581122 + L1PB4 LINE L1 3861 6156 0 1350 279 78 0 chr4 6707569 6707952 -177580710 - LTR16C LTR ERVL 0 491 79 1407 235 118 30 chr4 6708010 6708483 -177580179 - MLT2B2 LTR ERVL 0 515 1 280 277 204 0 chr4 6708655 6708792 -177579870 - L2 LINE L2 0 3313 3149 557 238 47 29 chr4 6708796 6708827 -177579835 + MLT1I LTR MaLR 232 261 -148 2406 164 6 6 chr4 6708827 6709192 -177579470 + MLT1A1 LTR MaLR 1 365 0 557 238 47 29 chr4 6709192 6709332 -177579330 + MLT1I LTR MaLR 261 406 -3 535 279 99 97 chr4 6709392 6709499 -177579163 + L2 LINE L2 2723 2828 -444 2462 104 16 65 chr4 6709499 6709882 -177578780 - THE1B LTR MaLR 0 364 1 535 279 99 97 chr4 6709882 6710331 -177578331 + L2 LINE L2 2828 3272 0 280 241 71 36 chr4 6711633 6711745 -177576917 + MIR SINE MIR 74 189 -73 201 74 0 0 chr4 6711951 6711978 -177576684 + (CA)n Simple_repeat Simple_repeat 1 27 0 717 199 7 21 chr4 6712005 6712146 -177576516 + MER45 DNA AcHobo 1 139 -901 629 170 54 34 chr4 6712148 6712295 -177576367 - L1MA8 LINE L1 -14 6277 6128 4733 161 20 15 chr4 6712295 6713182 -177575480 - L1 LINE L1 -1379 4767 3876 295 259 64 59 chr4 6713201 6713421 -177575241 - L1MC/D LINE L1 -2332 5476 5256 3155 180 3 7 chr4 6713580 6714175 -177574487 - L1 LINE L1 -2249 3897 3305 443 318 74 52 chr4 6714175 6714581 -177574081 + L2 LINE L2 2876 3290 -23 690 176 6 80 chr4 6714698 6714874 -177573788 - MER106B DNA MER1_type -1 1058 896 200 347 68 32 chr4 6716521 6716711 -177571951 + L2 LINE L2 2862 3058 -214 281 266 145 24 chr4 6716910 6717034 -177571628 + MIR SINE MIR 40 178 -84 200 233 0 0 chr4 6717184 6717227 -177571435 + T-rich Low_complexity Low_complexity 1 43 0 331 316 66 15 chr4 6717660 6717796 -177570866 - MER5B DNA MER1_type -31 147 5 1873 140 90 36 chr4 6718437 6718793 -177569869 - THE1C LTR MaLR 0 375 1 3398 117 21 46 chr4 6718793 6719355 -177569307 - THE1C-int LTR MaLR 0 1580 1033 1776 163 21 0 chr4 6769355 6769638 -177519024 - AluSx SINE Alu -23 289 1 26 64 0 0 chr4 6769700 6769747 -177518915 + AT_rich Low_complexity Low_complexity 1 47 0 552 311 77 30 chr4 6769838 6770398 -177518264 - L1ME4a LINE L1 -206 5915 5330 2708 23 0 3 chr4 6770533 6770842 -177517820 - L1PA4 LINE L1 -312 5843 5536 1823 36 22 0 chr4 6770842 6771065 -177517597 + L1P LINE L1 4986 5213 -933 9497 23 17 1 chr4 6771938 6773338 -177515324 - L1P1 LINE L1 -502 5653 4234 2281 81 0 7 chr4 6773438 6773735 -177514927 - L1P2 LINE L1 -383 5771 5477 1417 94 0 0 chr4 6773737 6773918 -177514744 + L1PA5 LINE L1 5970 6150 -4 1518 119 16 67 chr4 6773918 6774171 -177514491 + MSTA LTR MaLR 189 428 0 304 264 114 21 chr4 6774491 6774631 -177514031 + MIR SINE MIR 61 213 -49 333 321 9 9 chr4 6774711 6774823 -177513839 + MIR SINE MIR 4 115 -147 5175 132 17 11 chr4 6775173 6775724 -177512938 - L1PA15 LINE L1 -2 6163 5604 2309 115 0 0 chr4 6775724 6776029 -177512633 - AluSx SINE Alu -7 305 1 5175 132 17 11 chr4 6776029 6776281 -177512381 - L1PA15 LINE L1 -561 5604 5355 1667 253 87 31 chr4 6776404 6777360 -177511302 - L1M1 LINE L1 -4148 3417 2423 1658 155 33 39 chr4 6777354 6777690 -177510972 + L1MA7 LINE L1 5780 6113 -178 * 3147 168 73 16 chr4 6777690 6778255 -177510407 + MER44D DNA MER2_type 3 599 -106 502 263 32 5 chr4 6778268 6778401 -177510261 - MER2 DNA MER2_type -87 152 8 602 164 29 10 chr4 6778409 6778513 -177510149 + MER44D DNA MER2_type 599 704 -1 874 154 51 0 chr4 6778522 6778678 -177509984 + L1MA7 LINE L1 6123 6286 -5 2778 54 0 9 chr4 6778951 6779282 -177509380 + L1PA5 LINE L1 5824 6151 -3 4351 173 23 34 chr4 6779740 6780670 -177507992 - L1P LINE L1 -829 5317 4399 440 145 12 24 chr4 6781633 6781716 -177506946 - THE1C LTR MaLR -293 82 1 278 307 79 11 chr4 6781717 6781906 -177506756 - MER113 DNA MER1_type? -318 203 2 266 148 19 0 chr4 6782833 6782887 -177505775 + GA-rich Low_complexity Low_complexity 1 55 0 1184 247 50 15 chr4 6783461 6783862 -177504800 + HAL1 LINE L1 781 1195 -1312 2154 101 0 71 chr4 6784032 6784369 -177504293 + AluSq SINE Alu 1 313 0 1236 196 57 25 chr4 6784705 6785167 -177503495 - L1MC/D LINE L1 -749 5633 5258 2863 235 81 87 chr4 6785281 6785357 -177503305 - L1MC/D LINE L1 -1085 5297 5222 2229 110 0 0 chr4 6785357 6785649 -177503013 - AluSq SINE Alu -21 292 1 2863 235 81 87 chr4 6785649 6786883 -177501779 - L1MC/D LINE L1 -1160 5222 3995 2391 68 6 3 chr4 6787141 6787452 -177501210 + AluSx SINE Alu 1 312 0 875 276 85 65 chr4 6787939 6788399 -177500263 - MLT1J LTR MaLR -42 469 1 530 227 153 0 chr4 6788692 6788842 -177499820 + MIR SINE MIR 41 213 -49 298 210 49 0 chr4 6788842 6788923 -177499739 + MIR SINE MIR 129 213 -49 298 210 49 0 chr4 6788923 6789004 -177499658 + MIR SINE MIR 129 213 -49 323 262 71 8 chr4 6789004 6789130 -177499532 + MIR SINE MIR 129 262 0 310 319 60 64 chr4 6790267 6790502 -177498160 + MIR SINE MIR 28 261 -1 4825 98 0 12 chr4 6790636 6791296 -177497366 - L1P3 LINE L1 -5804 657 6 1669 206 27 0 chr4 6791434 6791807 -177496855 - L1 LINE L1 -1112 5034 4652 5653 190 10 22 chr4 6791810 6792985 -177495677 + L1 LINE L1 3470 4630 -1516 2698 236 48 38 chr4 6792995 6793945 -177494717 - L1 LINE L1 -2166 3980 3021 466 237 95 27 chr4 6793925 6794187 -177494475 - L1MC/D LINE L1 -3961 2423 2144 * 321 177 89 48 chr4 6794212 6794336 -177494326 - L1MC4 LINE L1 0 8042 7914 * 581 307 42 3 chr4 6794319 6794625 -177494037 - L1M4 LINE L1 -947 5199 4882 3333 115 8 123 chr4 6794658 6795308 -177493354 - L1PB2 LINE L1 -7 6144 5570 5554 217 9 12 chr4 6795408 6796658 -177492004 - L1PB2 LINE L1 -906 5240 3995 2061 63 7 7 chr4 6796762 6797031 -177491631 - AluSx SINE Alu -29 283 15 1577 158 31 54 chr4 6797031 6797348 -177491314 - MER31B LTR ERV1 -156 310 1 692 265 64 15 chr4 6797471 6797675 -177490987 - MER58A DNA MER1_type -9 215 2 972 239 80 84 chr4 6799025 6799459 -177489203 - MLT2B1 LTR ERVL -8 512 71 1153 205 216 3 chr4 6799728 6800103 -177488559 + MLT1C LTR MaLR 10 464 -3 1031 227 58 73 chr4 6800106 6800285 -177488377 + MER113 DNA MER1_type? 32 212 -309 1568 213 56 34 chr4 6800285 6800642 -177488020 - MLT1A1 LTR MaLR 0 365 1 1031 227 58 73 chr4 6800642 6800859 -177487803 + MER113 DNA MER1_type? 212 422 -99 30626 111 11 15 chr4 6801079 6806687 -177481975 + L1PA8 LINE L1 589 6172 0 3079 152 12 44 chr4 6806687 6807470 -177481192 + L1PA16 LINE L1 5031 5783 -383 790 144 68 0 chr4 6807470 6807601 -177481061 + L1PA16 LINE L1 6025 6165 -1 2749 241 75 15 chr4 6807604 6807647 -177481015 + L1MB7 LINE L1 3973 4012 -2134 202 0 91 0 chr4 6807647 6807680 -177480982 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2749 241 75 15 chr4 6807680 6808508 -177480154 + L1MB7 LINE L1 4012 4896 -1250 640 276 60 0 chr4 6808515 6808765 -177479897 - L1M4 LINE L1 -1456 4690 4426 237 213 0 0 chr4 6808770 6808817 -177479845 + L1PA12 LINE L1 6116 6162 -6 28 29 0 0 chr4 6808834 6808869 -177479793 + AT_rich Low_complexity Low_complexity 1 35 0 530 221 39 0 chr4 6808870 6808974 -177479688 + Tigger3(Golem) DNA MER2_type 1 108 -2921 * 1598 121 55 16 chr4 6808961 6809268 -177479394 + Tigger3(Golem) DNA MER2_type 2273 2591 -438 240 167 0 0 chr4 6809268 6809310 -177479352 - L1PA13 LINE L1 -6343 444 403 2023 122 0 0 chr4 6809320 6809606 -177479056 + L1PA15 LINE L1 5879 6164 -1 1710 58 0 108 chr4 6809613 6809871 -177478791 + AluY SINE Alu 1 230 -81 356 275 0 0 chr4 6809871 6809962 -177478700 - L1ME LINE L1 -699 5465 5375 252 89 44 0 chr4 6809973 6810018 -177478644 + Alu SINE Alu 255 301 0 * 2716 150 48 17 chr4 6809998 6810457 -177478205 + Tigger3(Golem) DNA MER2_type 2557 3029 0 3936 191 58 36 chr4 6810457 6811707 -177476955 + L1MB7 LINE L1 4899 6175 -9 306 217 28 85 chr4 6811717 6811823 -177476839 + L1MC4a LINE L1 5880 5979 -1829 2164 227 88 64 chr4 6812004 6812363 -177476299 + L1ME3A LINE L1 5317 5666 -504 2462 73 0 0 chr4 6812363 6812664 -177475998 + AluSg SINE Alu 1 301 -9 2164 227 88 64 chr4 6812664 6813129 -177475533 + L1ME3A LINE L1 5666 6161 -9 1607 117 68 19 chr4 6813258 6813523 -177475139 - MLT1B LTR MaLR 0 390 113 1457 150 31 8 chr4 6813966 6814220 -177474442 - Tigger2 DNA MER2_type -1 2717 2458 2410 129 47 3 chr4 6814273 6814638 -177474024 - Tigger2 DNA MER2_type -1966 752 372 1816 99 8 4 chr4 6814741 6814994 -177473668 - L1PA8 LINE L1 -51 6121 5868 1949 126 136 79 chr4 6815024 6815389 -177473273 + MSTA LTR MaLR 1 393 -35 2192 123 0 13 chr4 6815389 6815698 -177472964 - AluSx SINE Alu -7 305 1 1949 126 136 79 chr4 6815698 6815737 -177472925 + MSTA LTR MaLR 393 428 0 9112 146 56 22 chr4 6815739 6817266 -177471396 + MSTA-int LTR MaLR 3 1580 0 2096 141 147 8 chr4 6817266 6817641 -177471021 + MSTA LTR MaLR 1 427 -1 993 308 51 45 chr4 6817663 6818172 -177470490 - L1MEd LINE L1 -5596 523 12 188 234 21 0 chr4 6818373 6818420 -177470242 - L2 LINE L2 0 3313 3266 227 387 124 13 chr4 6819828 6820053 -177468609 - L2 LINE L2 -339 2975 2726 201 349 19 0 chr4 6820074 6820180 -177468482 - L2 LINE L2 -299 2973 2866 2229 91 0 17 chr4 6820254 6820552 -177468110 - AluY SINE Alu -18 293 1 339 340 27 0 chr4 6820552 6820699 -177467963 - MIR SINE MIR 0 262 112 384 293 153 27 chr4 6820765 6821099 -177467563 + L2 LINE L2 2594 2969 -345 256 278 88 36 chr4 6821127 6821321 -177467341 - LTR67 LTR ERVL -2 555 352 303 260 42 31 chr4 6821376 6821472 -177467190 - LTR67 LTR ERVL -369 188 92 245 279 72 27 chr4 6821625 6821736 -177466926 + L2 LINE L2 3182 3297 -16 355 178 55 0 chr4 6821828 6821901 -177466761 - MER116 DNA Mariner 0 80 4 433 254 54 15 chr4 6822558 6822688 -177465974 + MIR SINE MIR 79 213 -49 244 288 0 0 chr4 6822725 6822784 -177465878 + MIR SINE MIR 204 262 0 821 180 0 0 chr4 6823501 6823623 -177465039 + FLAM_C SINE Alu 2 123 -20 227 198 75 23 chr4 6824422 6824513 -177464149 + MIR SINE MIR 85 147 -61 257 294 88 0 chr4 6825174 6825276 -177463386 - L2 LINE L2 -26 3246 3136 742 279 12 59 chr4 6825330 6825520 -177463142 + MIR SINE MIR 21 198 -64 2061 146 0 0 chr4 6825520 6825822 -177462840 + AluSx SINE Alu 1 302 -10 742 279 12 59 chr4 6825822 6825885 -177462777 + MIR SINE MIR 198 262 0 214 289 0 0 chr4 6825895 6825947 -177462715 - L2 LINE L2 -191 3081 3030 1131 186 48 5 chr4 6825963 6826173 -177462489 - MER20 DNA MER1_type 0 219 1 27 0 0 0 chr4 6827045 6827072 -177461590 + AT_rich Low_complexity Low_complexity 1 27 0 13798 139 36 14 chr4 6827995 6830260 -177458402 - Tigger1 DNA MER2_type -81 2337 24 425 103 0 17 chr4 6830375 6830433 -177458229 + AluJ/FLAM SINE Alu 2 58 -254 319 317 60 12 chr4 6831015 6831182 -177457480 + L2 LINE L2 3096 3270 -2 481 208 285 27 chr4 6831621 6831881 -177456781 - MLT1G1 LTR MaLR -24 571 245 355 260 12 8 chr4 6832255 6832380 -177456282 + MIR3 SINE MIR 70 196 -12 828 264 57 31 chr4 6833307 6833659 -177455003 + HAL1 LINE L1 2 362 -2145 4528 44 2 0 chr4 6833676 6834195 -177454467 - L1PA3 LINE L1 -3 6152 5633 11417 35 1 1 chr4 6834295 6835677 -177452985 - L1PA3 LINE L1 -2076 4070 2689 1397 301 118 27 chr4 6835678 6836631 -177452031 + HAL1 LINE L1 360 1398 -1109 255 271 57 0 chr4 6836634 6836704 -177451958 + HAL1 LINE L1 1434 1507 -1000 1690 189 6 31 chr4 6836704 6837022 -177451640 - AluJb SINE Alu 0 312 3 1494 262 75 74 chr4 6837057 6837966 -177450696 + HAL1 LINE L1 1596 2505 -2 2912 185 24 2 chr4 6838574 6839083 -177449579 + MLT2B1 LTR ERVL 1 520 0 257 192 0 39 chr4 6839327 6839379 -177449283 + MARNA DNA Mariner 64 113 -473 249 317 38 59 chr4 6839404 6839590 -177449072 + MIR SINE MIR 46 227 -35 343 316 53 36 chr4 6839628 6839853 -177448809 - MARNA DNA Mariner -173 413 185 200 253 0 35 chr4 6840483 6840570 -177448092 + (TA)n Simple_repeat Simple_repeat 1 84 0 203 189 57 0 chr4 6840615 6840668 -177447994 - MIR SINE MIR -58 204 149 6721 150 40 9 chr4 6840773 6843777 -177444885 - L1PBa LINE L1 -2396 4466 1311 618 115 353 0 chr4 6843779 6843901 -177444761 - L1PBa LINE L1 -5704 1159 995 * 1203 143 10 0 chr4 6843897 6844093 -177444569 - L1PBa LINE L1 -6665 198 1 209 311 66 9 chr4 6844098 6844204 -177444458 + MIR SINE MIR 82 193 -69 423 305 31 16 chr4 6844291 6844419 -177444243 + L2 LINE L2 3180 3309 -4 7515 148 15 24 chr4 6844427 6845568 -177443094 + L1MA5 LINE L1 3984 5135 -1165 2224 120 0 0 chr4 6845568 6845869 -177442793 + AluSx SINE Alu 1 301 -11 7515 148 15 24 chr4 6845869 6847063 -177441599 + L1MA5 LINE L1 5135 6298 -2 1615 247 50 8 chr4 6847063 6847586 -177441076 + L1M4 LINE L1 3080 3624 -2522 29 47 0 0 chr4 6847586 6847629 -177441033 + AT_rich Low_complexity Low_complexity 1 43 0 407 202 59 17 chr4 6847823 6847942 -177440720 - L1M4 LINE L1 -1015 5131 5008 22 0 0 0 chr4 6847942 6847964 -177440698 + AT_rich Low_complexity Low_complexity 1 22 0 5969 25 3 9 chr4 6847970 6848638 -177440024 - L1PA3 LINE L1 0 6155 5492 537 198 58 0 chr4 6848640 6848761 -177439901 + L1M4 LINE L1 3619 3746 -2400 290 273 114 30 chr4 6849064 6849196 -177439466 + L2 LINE L2 3171 3313 0 262 180 34 79 chr4 6849213 6849302 -177439360 - MIR SINE MIR 0 262 178 203 250 50 0 chr4 6849999 6850059 -177438603 - MIR SINE MIR -12 250 188 367 284 132 56 chr4 6850066 6850263 -177438399 - MIR SINE MIR -3 259 48 269 206 0 15 chr4 6850374 6850442 -177438220 + (CATATA)n Simple_repeat Simple_repeat 1 67 0 329 264 195 38 chr4 6851209 6851368 -177437294 - MIR3 SINE MIR -4 204 21 578 243 104 30 chr4 6851859 6852061 -177436601 + MIR SINE MIR 46 262 0 221 338 68 0 chr4 6852463 6852537 -177436125 + L2 LINE L2 3101 3179 -93 335 286 209 5 chr4 6852606 6852812 -177435850 + MIR SINE MIR 10 257 -5 410 333 117 0 chr4 6853581 6853752 -177434910 + L2 LINE L2 2771 2961 -353 5367 258 116 29 chr4 6853794 6855718 -177432944 + L1ME LINE L1 816 2573 -4368 984 229 19 19 chr4 6855718 6855928 -177432734 - MER63A DNA MER1_type 0 210 1 5367 258 116 29 chr4 6855928 6856432 -177432230 + L1ME LINE L1 2573 3032 -3909 2340 103 0 3 chr4 6856432 6856742 -177431920 - AluY SINE Alu -2 309 1 5367 258 116 29 chr4 6856742 6857853 -177430809 + L1ME LINE L1 3032 4833 -2108 588 161 0 0 chr4 6857886 6857979 -177430683 + HY3 scRNA scRNA 4 96 -5 1257 217 56 57 chr4 6857999 6858153 -177430509 + L1ME LINE L1 5967 6120 -841 1753 151 57 17 chr4 6858153 6858451 -177430211 - AluSx SINE Alu -2 310 1 1257 217 56 57 chr4 6858451 6858798 -177429864 + L1ME LINE L1 6120 6473 -488 674 155 30 37 chr4 6859159 6859392 -177429270 + AluJb SINE Alu 35 312 0 366 274 183 0 chr4 6859839 6860003 -177428659 - MIR SINE MIR 0 262 69 218 311 120 24 chr4 6860954 6861084 -177427578 + MIR SINE MIR 77 228 -34 2107 159 26 34 chr4 6861084 6861462 -177427200 - THE1C LTR MaLR 0 375 1 218 311 120 24 chr4 6861462 6861498 -177427164 + MIR SINE MIR 228 259 -3 510 257 11 75 chr4 6861681 6861868 -177426794 + MLT1D LTR MaLR 14 188 -438 14925 205 70 13 chr4 6861868 6861923 -177426739 + L1MA4A LINE L1 5 55 -6950 1915 136 59 56 chr4 6861923 6862297 -177426365 + THE1C LTR MaLR 1 375 0 14925 205 70 13 chr4 6862297 6865395 -177423267 + L1MA4A LINE L1 55 2974 -4031 189 0 0 0 chr4 6865395 6865416 -177423246 + (CAA)n Simple_repeat Simple_repeat 2 22 0 14925 205 70 13 chr4 6865416 6868603 -177420059 + L1MA4A LINE L1 2974 6746 -259 2073 123 3 0 chr4 6868603 6868887 -177419775 - AluSx SINE Alu -27 285 1 14925 205 70 13 chr4 6868887 6869156 -177419506 + L1MA4A LINE L1 6746 6998 -7 27 29 0 0 chr4 6869156 6869190 -177419472 + AT_rich Low_complexity Low_complexity 1 34 0 924 184 161 11 chr4 6869203 6869473 -177419189 + MLT1D LTR MaLR 216 502 -3 217 267 105 23 chr4 6869476 6869562 -177419100 + MIR SINE MIR 159 251 -11 1091 204 13 44 chr4 6869862 6870087 -177418575 - MER20 DNA MER1_type 0 219 2 929 200 44 62 chr4 6870515 6870790 -177417872 - MLT1C LTR MaLR -197 270 1 2122 109 0 3 chr4 6871038 6871321 -177417341 + AluSq SINE Alu 2 283 -30 226 196 0 0 chr4 6871323 6871369 -177417293 - L1MC4 LINE L1 -1339 6703 6658 468 150 0 0 chr4 6871369 6871449 -177417213 + (CA)n Simple_repeat Simple_repeat 2 81 0 276 158 0 0 chr4 6873007 6873064 -177415598 + (CA)n Simple_repeat Simple_repeat 2 58 0 429 205 0 0 chr4 6873623 6873740 -177414922 + (TCCA)n Simple_repeat Simple_repeat 1 117 0 828 272 99 60 chr4 6873758 6874374 -177414288 - L2 LINE L2 -37 3276 2641 1294 115 0 0 chr4 6874974 6875157 -177413505 + AluSp SINE Alu 129 311 -2 2933 156 71 15 chr4 6875164 6875701 -177412961 - L1MB2 LINE L1 -10 6161 5595 1242 167 34 0 chr4 6875729 6875933 -177412729 - AluJb SINE Alu -47 265 55 533 266 198 54 chr4 6876772 6877140 -177411522 - LTR33A LTR ERVL -10 513 93 194 231 0 0 chr4 6877441 6877480 -177411182 + L2 LINE L2 3194 3232 -40 263 289 40 40 chr4 6878347 6878496 -177410166 + L2 LINE L2 2685 2833 -481 353 306 127 33 chr4 6878697 6878942 -177409720 - MLT1K LTR MaLR -182 406 139 24 32 0 0 chr4 6879184 6879215 -177409447 + AT_rich Low_complexity Low_complexity 1 31 0 2165 95 0 7 chr4 6879215 6879499 -177409163 - AluSq SINE Alu -31 282 1 233 371 86 54 chr4 6879502 6879723 -177408939 + L2 LINE L2 3022 3249 -23 191 333 19 29 chr4 6880719 6880824 -177407838 + MIR SINE MIR 46 149 -113 2010 121 4 4 chr4 6881544 6881849 -177406813 - AluSx SINE Alu 0 305 1 719 145 69 0 chr4 6881852 6881983 -177406679 + L1MB2 LINE L1 6028 6167 -4 359 252 17 17 chr4 6881991 6882106 -177406556 + MIR SINE MIR 135 249 -13 1209 87 0 0 chr4 6882110 6882259 -177406403 - AluSg SINE Alu -161 149 1 956 264 97 19 chr4 6882379 6882914 -177405748 - L1M4 LINE L1 -2803 3343 2767 260 287 121 45 chr4 6883132 6883289 -177405373 - L2 LINE L2 0 3272 3104 1491 253 55 30 chr4 6883603 6884112 -177404550 - L1ME3 LINE L1 -1 6161 5640 315 281 26 18 chr4 6884264 6884378 -177404284 - MIR3 SINE MIR -24 184 70 236 271 169 34 chr4 6885013 6885131 -177403531 + L2 LINE L2 3139 3272 0 720 222 0 0 chr4 6885132 6885386 -177403276 + (TGAG)n Simple_repeat Simple_repeat 1 254 0 933 172 0 0 chr4 6885422 6885602 -177403060 + (TGAG)n Simple_repeat Simple_repeat 1 180 0 333 273 206 5 chr4 6885627 6885821 -177402841 + L2 LINE L2 2536 2768 -546 2187 128 0 6 chr4 6885833 6886146 -177402516 + AluSx SINE Alu 1 311 -1 201 291 96 8 chr4 6886152 6886340 -177402322 + MIR SINE MIR 16 260 -2 281 272 278 12 chr4 6886419 6886592 -177402070 + MIR SINE MIR 35 253 -9 1378 267 132 16 chr4 6886712 6887516 -177401146 + L2 LINE L2 2420 3288 -25 850 303 16 28 chr4 6887562 6887816 -177400846 + MIR SINE MIR 2 252 -10 309 293 98 62 chr4 6887940 6888165 -177400497 - L2 LINE L2 -115 3157 2925 303 140 0 0 chr4 6888241 6888291 -177400371 + (CA)n Simple_repeat Simple_repeat 2 51 0 455 341 96 47 chr4 6888464 6888892 -177399770 - L2 LINE L2 -1 3271 2823 1647 233 31 46 chr4 6888895 6889351 -177399311 - LTR16A LTR ERVL 0 450 2 348 359 84 20 chr4 6889383 6889634 -177399028 - L2 LINE L2 -502 2812 2546 355 230 58 0 chr4 6889737 6889824 -177398838 - MIR SINE MIR -122 140 49 302 138 17 0 chr4 6889908 6889966 -177398696 + (TTA)n Simple_repeat Simple_repeat 2 60 0 279 241 123 92 chr4 6890484 6890520 -177398142 + L1ME4a LINE L1 5795 5828 -293 2450 58 3 0 chr4 6890520 6890815 -177397847 + AluY SINE Alu 2 297 -14 279 241 123 92 chr4 6890815 6891094 -177397568 + L1ME4a LINE L1 5828 6120 -1 2735 235 81 36 chr4 6891909 6892679 -177395983 - L1ME2 LINE L1 -66 6098 5241 2449 61 0 3 chr4 6892679 6892976 -177395686 + AluY SINE Alu 1 296 -15 2735 235 81 36 chr4 6892976 6893380 -177395282 - L1ME2 LINE L1 -923 5241 4857 375 362 82 15 chr4 6893380 6893576 -177395086 - LTR16C LTR ERVL -197 294 86 370 237 65 47 chr4 6894028 6894260 -177394402 - L1ME LINE L1 -303 5818 5583 225 276 17 138 chr4 6895699 6895815 -177392847 - MIR SINE MIR -58 150 49 444 311 66 59 chr4 6896437 6896708 -177391954 + L2 LINE L2 2858 3134 -179 419 0 20 0 chr4 6896708 6896759 -177391903 + (TG)n Simple_repeat Simple_repeat 2 53 0 444 311 66 59 chr4 6896759 6896895 -177391767 + L2 LINE L2 3134 3268 -45 2848 249 142 11 chr4 6896956 6897936 -177390726 + L1MEc LINE L1 34 1141 -5255 2503 229 56 61 chr4 6897925 6898299 -177390363 + L1M4 LINE L1 3604 3978 -2168 * 3641 83 13 0 chr4 6898299 6898746 -177389916 - MLT2A2 LTR ERVL 0 453 1 2503 229 56 61 chr4 6898746 6899133 -177389529 + L1M4 LINE L1 3978 4376 -1770 2096 115 11 4 chr4 6899133 6899411 -177389251 - AluSg SINE Alu -30 280 1 2503 229 56 61 chr4 6899411 6899584 -177389078 + L1M4 LINE L1 4376 4548 -1598 * 9761 26 0 0 chr4 6899582 6900767 -177387895 - L1PA2 LINE L1 -1397 4749 3565 7964 14 1 0 chr4 6900767 6902179 -177386483 + L1PA2 LINE L1 4743 6155 0 1263 221 34 0 chr4 6902203 6902525 -177386137 + L1M4 LINE L1 4533 4865 -1281 237 173 19 192 chr4 6902526 6902600 -177386062 - L2 LINE L2 -93 3220 3167 6164 60 18 15 chr4 6902600 6903378 -177385284 + LTR17 LTR ERV1 1 780 0 237 173 19 192 chr4 6903378 6903407 -177385255 - L2 LINE L2 -146 3167 3135 2303 114 0 0 chr4 6904181 6904480 -177384182 + AluSx SINE Alu 1 299 -13 235 322 66 25 chr4 6904863 6904984 -177383678 - MER5A DNA MER1_type -1 188 63 772 69 0 0 chr4 6905174 6905276 -177383386 - L1MA1 LINE L1 0 6302 6201 2062 157 13 24 chr4 6906061 6906438 -177382224 + MLT1B LTR MaLR 1 373 -17 585 254 21 0 chr4 6907201 6907343 -177381319 + MER45A DNA AcHobo 34 178 0 256 349 66 0 chr4 6907356 6907462 -177381200 - MIR SINE MIR -71 191 79 390 273 60 40 chr4 6907589 6907739 -177380923 + L2 LINE L2 3160 3312 -1 357 298 142 0 chr4 6907793 6907934 -177380728 - MIR SINE MIR -55 207 47 672 244 5 86 chr4 6908327 6908390 -177380272 + MIR SINE MIR 26 93 -169 1923 193 11 67 chr4 6908390 6908825 -177379837 - MLT2D LTR ERVL 0 414 4 672 244 5 86 chr4 6908825 6908982 -177379680 + MIR SINE MIR 93 228 -34 524 267 36 27 chr4 6909304 6909518 -177379144 - MIR SINE MIR -13 249 34 447 254 260 21 chr4 6910343 6910822 -177377840 - L2 LINE L2 0 3313 2713 200 310 0 0 chr4 6910875 6910933 -177377729 - L2 LINE L2 -774 2540 2483 1304 277 260 15 chr4 6910950 6912037 -177376625 - L2 LINE L2 -1938 1376 23 295 243 0 23 chr4 6912345 6912607 -177376055 + C-rich Low_complexity Low_complexity 1 255 0 317 306 67 40 chr4 6912973 6913147 -177375515 + MIR3 SINE MIR 12 190 -18 364 341 12 49 chr4 6913193 6913357 -177375305 + MIR3 SINE MIR 37 194 -14 281 331 111 94 chr4 6913804 6914164 -177374498 - L2 LINE L2 -8 3264 2899 421 303 43 33 chr4 6914227 6914276 -177374386 + MIR SINE MIR 20 67 -177 2335 100 6 3 chr4 6914276 6914587 -177374075 - AluSq SINE Alu -1 312 1 421 303 43 33 chr4 6914587 6914725 -177373937 + MIR SINE MIR 67 207 -37 228 244 309 24 chr4 6914868 6914991 -177373671 - MIR SINE MIR -5 257 100 301 255 29 29 chr4 6915563 6915665 -177372997 + L3b LINE CR1 1279 1380 -203 1871 198 7 44 chr4 6915831 6916236 -177372426 - MLT1B LTR MaLR 0 390 1 1490 250 70 2 chr4 6916252 6916708 -177371954 + MLT1D LTR MaLR 1 487 -18 277 282 12 12 chr4 6916721 6916806 -177371856 + MIR SINE MIR 162 246 -16 1076 243 36 30 chr4 6917246 6917498 -177371164 - MLT1C LTR MaLR -29 438 182 2228 109 23 7 chr4 6917498 6917802 -177370860 - AluY SINE Alu -2 309 1 1076 243 36 30 chr4 6917802 6917878 -177370784 - MLT1C LTR MaLR -285 182 108 269 143 175 0 chr4 6917965 6918028 -177370634 - MLT1C LTR MaLR -368 99 26 195 310 0 0 chr4 6918534 6918592 -177370070 - L2 LINE L2 -563 2751 2694 2033 125 32 0 chr4 6918701 6918980 -177369682 + AluSx SINE Alu 7 294 -18 240 261 144 27 chr4 6919205 6919316 -177369346 + MIR SINE MIR 105 228 -34 186 370 0 0 chr4 6919335 6919408 -177369254 + MIR SINE MIR 188 260 -2 317 324 82 34 chr4 6919817 6919937 -177368725 - MIR SINE MIR -25 237 101 2680 115 51 5 chr4 6919937 6920346 -177368316 - MSTA LTR MaLR 0 428 1 317 324 82 34 chr4 6920346 6920432 -177368230 - MIR SINE MIR -161 101 21 378 265 121 8 chr4 6921237 6921369 -177367293 - MIR SINE MIR -39 223 77 1104 278 44 54 chr4 6921372 6921876 -177366786 - MLT1E LTR MaLR -3 590 92 314 299 124 17 chr4 6921948 6922182 -177366480 + L2 LINE L2 2990 3248 -65 1210 221 95 52 chr4 6922615 6923058 -177365604 - MLT1C LTR MaLR 0 467 6 218 311 68 14 chr4 6923903 6923977 -177364685 - L2 LINE L2 -28 3285 3208 793 212 13 87 chr4 6924093 6924324 -177364338 - MER58C DNA MER1_type -1 214 1 469 278 69 0 chr4 6925063 6925207 -177363455 + MIR SINE MIR 47 200 -62 486 153 57 57 chr4 6925305 6925438 -177363224 - MER5A DNA MER1_type -53 136 4 287 272 130 0 chr4 6925449 6925541 -177363121 - MER5A DNA MER1_type 0 189 86 219 331 50 2 chr4 6926165 6926303 -177362359 + MIR SINE MIR 33 175 -76 373 293 121 0 chr4 6927342 6927458 -177361204 - L2 LINE L2 -2 3270 3141 325 234 184 96 chr4 6928326 6928804 -177359858 - MLT1H LTR MaLR -17 532 13 192 221 256 12 chr4 6929053 6929139 -177359523 - L2 LINE L2 -21 3251 3145 339 277 184 28 chr4 6929144 6929285 -177359377 - MER5B DNA MER1_type -5 173 11 2266 188 65 32 chr4 6929596 6930134 -177358528 + MER74A LTR ERVL 3 558 0 1376 196 110 6 chr4 6930668 6930985 -177357677 - MLT1C LTR MaLR -8 459 110 479 186 102 51 chr4 6931266 6931384 -177357278 - MLT1C LTR MaLR -343 124 1 2133 102 7 0 chr4 6931406 6931680 -177356982 - AluY SINE Alu -9 302 27 2119 138 22 43 chr4 6931951 6932035 -177356627 + MLT1A1 LTR MaLR 1 85 -280 2014 149 155 13 chr4 6932035 6932410 -177356252 - MSTA LTR MaLR 0 428 1 9075 178 42 1 chr4 6932417 6934003 -177354659 - MSTA-int LTR MaLR 0 1651 1 1844 138 121 87 chr4 6934003 6934417 -177354245 - MSTA LTR MaLR 0 428 1 2119 138 22 43 chr4 6934417 6934694 -177353968 + MLT1A1 LTR MaLR 89 363 -2 2154 146 125 8 chr4 6934747 6935130 -177353532 + MSTA LTR MaLR 1 428 0 268 301 36 0 chr4 6935690 6935773 -177352889 - LTR67 LTR ERVL -366 191 106 701 206 153 53 chr4 6937353 6937581 -177351081 - MLT1A1 LTR MaLR -41 324 74 2442 88 0 0 chr4 6937581 6937877 -177350785 - AluY SINE Alu -15 296 1 240 211 175 0 chr4 6937897 6937954 -177350708 - MER2 DNA MER2_type -1 344 278 914 203 9 42 chr4 6938013 6938230 -177350432 - MER2 DNA MER2_type -135 210 1 233 128 106 0 chr4 6938240 6938287 -177350375 - MLT1A1 LTR MaLR -311 54 3 * 567 250 27 7 chr4 6938287 6938426 -177350236 + MLT1A2 LTR MaLR 233 374 0 282 248 199 71 chr4 6939334 6939684 -177348978 + L2 LINE L2 2624 3063 -250 * 458 257 18 0 chr4 6939683 6939796 -177348866 - MIR SINE MIR -75 187 73 308 286 142 24 chr4 6939800 6940063 -177348599 - MLT1K LTR MaLR 0 588 327 282 258 0 0 chr4 6940150 6940247 -177348415 + L1MC/D LINE L1 5156 5252 -894 422 247 140 88 chr4 6940335 6940699 -177347963 + L1MC/D LINE L1 5429 5811 -1997 319 161 16 16 chr4 6940699 6940761 -177347901 - MER46C DNA MER2_type -1 337 276 28 61 0 0 chr4 6940769 6940818 -177347844 + AT_rich Low_complexity Low_complexity 1 49 0 454 241 76 0 chr4 6940862 6941007 -177347655 - MER46C DNA MER2_type -97 241 86 904 259 19 42 chr4 6941723 6941986 -177346676 - MIR SINE MIR -2 260 4 280 272 39 10 chr4 6942712 6942815 -177345847 + CT-rich Low_complexity Low_complexity 5 110 0 196 362 46 11 chr4 6943537 6943711 -177344951 + L2 LINE L2 2827 3006 -266 540 335 61 48 chr4 6943758 6944268 -177344394 - L1MEd LINE L1 -997 1267 69 485 269 210 31 chr4 6944269 6944622 -177344040 - MLT1H LTR MaLR -7 542 127 492 232 54 152 chr4 6946461 6946737 -177341925 - MIR SINE MIR 0 262 14 324 331 8 0 chr4 6946769 6946902 -177341760 - MARNA DNA Mariner -43 543 410 2057 126 0 53 chr4 6947432 6947622 -177341040 - AluSq SINE Alu 0 310 142 2445 87 0 3 chr4 6947622 6947932 -177340730 - AluY SINE Alu -2 309 1 1371 156 0 0 chr4 6947932 6948067 -177340595 - AluSx SINE Alu -177 135 1 2057 126 0 53 chr4 6947932 6948067 -177340595 - AluSq SINE Alu -168 142 1 623 290 44 11 chr4 6948337 6948520 -177340142 - MIR SINE MIR -72 190 2 325 340 89 49 chr4 6949167 6949593 -177339069 - L2 LINE L2 -3 3269 2827 300 295 23 54 chr4 6949919 6950048 -177338614 + MIR SINE MIR 119 243 -19 243 321 74 0 chr4 6950110 6950191 -177338471 - L2 LINE L2 -50 3222 3136 7201 175 158 12 chr4 6950362 6951853 -177336809 + MER52A LTR ERV1 48 1755 0 243 234 138 21 chr4 6951895 6951989 -177336673 - MIR SINE MIR -138 124 20 234 0 0 0 chr4 6951999 6952025 -177336637 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 438 282 31 49 chr4 6952026 6952189 -177336473 - L2 LINE L2 -14 3299 3140 2631 231 92 27 chr4 6952196 6952965 -177335697 - L1ME1 LINE L1 -9 6952 6105 1902 138 57 7 chr4 6952965 6953262 -177335400 + AluSx SINE Alu 1 312 0 2631 231 92 27 chr4 6953262 6953411 -177335251 - L1ME1 LINE L1 -856 6105 5967 549 161 0 0 chr4 6953431 6953524 -177335138 - HY3 scRNA scRNA -5 96 4 4866 262 114 28 chr4 6953557 6954668 -177333994 - L1ME1 LINE L1 -2108 4833 3819 2367 107 0 3 chr4 6954668 6954978 -177333684 + AluY SINE Alu 1 309 -2 4866 262 114 28 chr4 6954978 6955482 -177333180 - L1ME1 LINE L1 -3122 3819 3360 924 229 19 19 chr4 6955482 6955692 -177332970 + MER63A DNA MER1_type 1 210 0 4866 262 114 28 chr4 6955692 6957615 -177331047 - L1ME1 LINE L1 -3581 3360 816 405 333 117 0 chr4 6957657 6957828 -177330834 - L2 LINE L2 -353 2961 2771 354 289 204 5 chr4 6958591 6958802 -177329860 - MIR SINE MIR 0 262 10 217 338 68 0 chr4 6958871 6958945 -177329717 - L2 LINE L2 -93 3179 3101 606 263 117 29 chr4 6959344 6959584 -177329078 - MIR SINE MIR 0 262 2 233 328 172 38 chr4 6959610 6959976 -177328686 - L2 LINE L2 -627 2687 2273 348 264 195 38 chr4 6960025 6960184 -177328478 + MIR3 SINE MIR 21 204 -4 311 269 8 76 chr4 6960933 6961052 -177327610 + L1MC4 LINE L1 6622 6732 -1310 428 274 132 56 chr4 6961128 6961325 -177327337 + MIR SINE MIR 48 259 -3 214 250 50 0 chr4 6961332 6961392 -177327270 + MIR SINE MIR 188 250 -12 260 366 27 9 chr4 6961465 6961577 -177327085 + MIR SINE MIR 24 137 -71 272 180 34 79 chr4 6962094 6962183 -177326479 + MIR SINE MIR 178 262 0 318 280 114 30 chr4 6962200 6962332 -177326330 - L2 LINE L2 0 3313 3171 197 336 50 17 chr4 6962464 6962583 -177326079 - L2 LINE L2 -209 3063 2941 257 262 94 60 chr4 6963282 6963431 -177325231 + MIR3 SINE MIR 33 186 -22 184 346 0 0 chr4 6963530 6963582 -177325080 - L2 LINE L2 -14 3258 3207 690 254 50 35 chr4 6963670 6963753 -177324909 + MIR SINE MIR 28 108 -154 1453 241 81 27 chr4 6963753 6964196 -177324466 - MLT1C LTR MaLR 0 467 1 690 254 50 35 chr4 6964196 6964313 -177324349 + MIR SINE MIR 108 231 -31 41271 36 22 1 chr4 6965144 6971171 -177317491 - L1PA2 LINE L1 0 6155 1 571 257 41 53 chr4 6971208 6971379 -177317283 - MIR SINE MIR 0 262 94 225 223 155 58 chr4 6971559 6971662 -177317000 + MIR SINE MIR 29 141 -67 1312 163 8 31 chr4 6972188 6972446 -177316216 - L1MB5 LINE L1 0 6174 5923 1973 133 33 0 chr4 6972826 6973126 -177315536 + AluSq SINE Alu 1 310 -3 349 336 29 14 chr4 6973491 6973631 -177315031 - MIR3 SINE MIR -49 159 18 1973 133 3 30 chr4 6973888 6974189 -177314473 + AluJb SINE Alu 1 293 -19 211 243 30 52 chr4 6974252 6974351 -177314311 + MIR SINE MIR 99 200 -8 184 287 176 0 chr4 6974505 6974613 -177314049 + L2 LINE L2 3146 3272 0 23 33 0 0 chr4 6975154 6975184 -177313478 + AT_rich Low_complexity Low_complexity 1 30 0 1997 122 3 14 chr4 6975602 6975896 -177312766 + AluSx SINE Alu 1 291 -21 3419 116 25 26 chr4 6976099 6976627 -177312035 + MER1A DNA MER1_type 1 527 0 442 327 7 20 chr4 6976944 6977094 -177311568 - L3 LINE CR1 -89 1488 1341 302 353 14 43 chr4 6977126 6977333 -177311329 + MIR SINE MIR 51 251 -11 445 250 74 23 chr4 6977492 6977668 -177310994 + MIR SINE MIR 49 233 -29 257 339 35 9 chr4 6977901 6978016 -177310646 - L2 LINE L2 -477 2837 2720 * 393 286 124 57 chr4 6978013 6978156 -177310506 + MIR SINE MIR 6 169 -93 1280 164 19 5 chr4 6978156 6978369 -177310293 - MER20 DNA MER1_type -3 216 1 393 286 124 57 chr4 6978369 6978435 -177310227 + MIR SINE MIR 169 229 -33 192 345 36 0 chr4 6979202 6979257 -177309405 + MIR3 SINE MIR 133 189 -19 195 42 0 0 chr4 6979764 6979788 -177308874 + (GA)n Simple_repeat Simple_repeat 2 25 0 269 233 0 0 chr4 6979975 6980035 -177308627 + MIR SINE MIR 88 147 -61 2188 122 0 3 chr4 6980164 6980459 -177308203 + AluSq SINE Alu 1 294 -19 203 288 34 0 chr4 6980628 6980687 -177307975 + L2 LINE L2 3136 3196 -76 1448 177 59 67 chr4 6980795 6981168 -177307494 - MLT1B LTR MaLR -20 370 1 239 299 0 0 chr4 6981241 6981308 -177307354 + MIR SINE MIR 115 181 -81 235 318 65 9 chr4 6982263 6982370 -177306292 - L2 LINE L2 -24 3248 3136 243 292 14 0 chr4 6983032 6983104 -177305558 + MIR SINE MIR 22 94 -168 2668 54 0 6 chr4 6983744 6984057 -177304605 - AluY SINE Alu 0 311 1 1984 102 11 25 chr4 6984128 6984411 -177304251 + AluSp SINE Alu 1 279 -34 575 129 0 10 chr4 6984429 6984530 -177304132 + (GGAA)n Simple_repeat Simple_repeat 1 100 0 792 207 40 6 chr4 6984576 6984750 -177303912 + MER5A DNA MER1_type 1 180 -9 479 311 21 31 chr4 6984936 6985129 -177303533 - MIR SINE MIR -70 192 2 926 127 0 182 chr4 6985187 6985423 -177303239 - 7SK RNA RNA 0 193 1 311 261 35 49 chr4 6985445 6985587 -177303075 + MER5B DNA MER1_type 1 140 -38 208 335 99 13 chr4 6985893 6986045 -177302617 - MIR3 SINE MIR -24 184 20 187 273 91 57 chr4 6986395 6986483 -177302179 + MIR SINE MIR 55 145 -63 469 320 120 27 chr4 6987155 6987526 -177301136 - L2 LINE L2 -223 3090 2685 618 242 3 0 chr4 6988608 6988961 -177299701 + (TG)n Simple_repeat Simple_repeat 1 354 0 780 217 49 0 chr4 6989227 6989411 -177299251 - MER20 DNA MER1_type -24 195 3 317 260 0 6 chr4 6990025 6990206 -177298456 + (CA)n Simple_repeat Simple_repeat 1 180 0 2067 183 46 0 chr4 6990434 6990828 -177297834 - MSTB LTR MaLR 0 426 15 435 343 157 0 chr4 6991143 6991353 -177297309 - MIR SINE MIR -1 261 19 201 74 0 0 chr4 6991402 6991429 -177297233 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 412 244 193 10 chr4 6991744 6991941 -177296721 - MIR SINE MIR -10 252 20 341 294 87 38 chr4 6992108 6992347 -177296315 - MIR SINE MIR -12 250 1 419 297 143 6 chr4 6992381 6992556 -177296106 - MIR SINE MIR -7 255 57 348 255 20 29 chr4 6992856 6992958 -177295704 + L1ME4a LINE L1 5800 5900 -221 278 141 16 47 chr4 6993679 6993733 -177294929 + ORSL DNA AcHobo 1 54 -221 1365 247 70 20 chr4 6993733 6994178 -177294484 - MLT1C LTR MaLR 0 467 1 302 267 67 0 chr4 6994912 6994987 -177293675 + MIR SINE MIR 14 93 -169 2339 59 42 3 chr4 6995323 6995610 -177293052 + AluY SINE Alu 1 298 -13 237 321 130 41 chr4 6995816 6996062 -177292600 - L2 LINE L2 -90 3182 2915 2054 180 69 7 chr4 6997721 6998161 -177290501 + MLT1C LTR MaLR 1 467 0 234 324 59 20 chr4 6998173 6998275 -177290387 + MER5A DNA MER1_type 80 185 -4 279 345 18 0 chr4 6998464 6998574 -177290088 - LTR16C LTR ERVL -287 204 93 996 163 98 25 chr4 6999390 6999593 -177289069 - MER20 DNA MER1_type -1 218 1 198 286 209 9 chr4 6999724 6999829 -177288833 - L2 LINE L2 0 3313 3188 408 258 86 7 chr4 6999971 7000122 -177288540 - MIR SINE MIR -72 190 28 2318 104 3 0 chr4 7000375 7000674 -177287988 + AluSx SINE Alu 1 300 -12 241 289 59 17 chr4 7000819 7000951 -177287711 + MIR3 SINE MIR 25 161 -47 2375 79 0 16 chr4 7001682 7001986 -177286676 + AluSg SINE Alu 1 299 -11 1912 122 4 0 chr4 7001997 7002252 -177286410 + AluSx SINE Alu 39 294 -18 2356 80 6 26 chr4 7002429 7002742 -177285920 - AluSq SINE Alu -6 307 1 949 215 45 126 chr4 7003139 7003647 -177285015 + MLT1C LTR MaLR 1 467 0 640 293 90 24 chr4 7004090 7004424 -177284238 - MLT1I LTR MaLR -50 359 4 281 336 66 8 chr4 7005335 7005591 -177283071 - LTR33 LTR ERVL -241 280 10 2394 100 3 0 chr4 7005606 7005961 -177282701 - AluSx SINE Alu 0 356 1 416 300 53 87 chr4 7005974 7006274 -177282388 + L3 LINE CR1 1251 1540 -37 599 228 178 15 chr4 7006442 7006639 -177282023 + MIR SINE MIR 13 241 -21 2794 54 3 40 chr4 7006756 7007129 -177281533 - MER4E LTR ERV1 0 766 408 43870 47 1 1 chr4 7007129 7013247 -177275415 - L1PA4 LINE L1 -5 6150 30 1322 200 0 8 chr4 7013295 7013535 -177275127 - MER65C LTR ERV1 -41 420 183 377 118 0 0 chr4 7013541 7013592 -177275070 - MER65C LTR ERV1 -410 51 1 638 333 57 41 chr4 7013594 7014087 -177274575 - MER65C-int LTR ERV1 -2 4869 4369 1501 274 74 14 chr4 7014204 7014623 -177274039 - MER65C-int LTR ERV1 -779 4092 3649 1619 107 5 0 chr4 7014640 7014855 -177273807 + AluSg/x SINE Alu 82 297 -15 291 139 0 0 chr4 7014864 7014907 -177273755 + tRNA-Gln-CAG tRNA tRNA 1 43 -32 3326 197 60 77 chr4 7014908 7016142 -177272520 - MER65C-int LTR ERV1 -3125 3473 1037 699 137 0 0 chr4 7016144 7016284 -177272378 - AluSc SINE Alu 0 317 178 1240 197 45 74 chr4 7016285 7016654 -177272008 - MER65-int LTR ERV1 -2902 1969 1612 2307 98 7 0 chr4 7016654 7016949 -177271713 - AluSx SINE Alu -15 297 1 1240 197 45 74 chr4 7016949 7017000 -177271662 - MER65-int LTR ERV1 -3259 1612 1561 44458 40 6 2 chr4 7017120 7023241 -177265421 - L1PA3 LINE L1 -3 6152 7 521 257 43 53 chr4 7023248 7023435 -177265227 - MER34 LTR ERV1 -319 223 39 282 154 0 58 chr4 7023721 7023773 -177264889 - LTR57-int LTR ERVL -4992 351 303 305 307 57 17 chr4 7024504 7024680 -177263982 - MIR SINE MIR -26 236 54 402 301 7 15 chr4 7024977 7025113 -177263549 + L2 LINE L2 3136 3270 -2 215 277 208 10 chr4 7025229 7025330 -177263332 - MIR SINE MIR -109 153 33 496 231 52 15 chr4 7025734 7025868 -177262794 + MIR3 SINE MIR 17 155 -53 426 278 28 45 chr4 7026679 7026885 -177261777 + MIR SINE MIR 1 205 -57 25 0 0 0 chr4 7027191 7027216 -177261446 + AT_rich Low_complexity Low_complexity 1 25 0 746 212 7 0 chr4 7028728 7028874 -177259788 + MER58B DNA MER1_type 195 341 0 1958 140 164 32 chr4 7029108 7029451 -177259211 - MSTA LTR MaLR 0 428 28 2012 130 0 7 chr4 7029451 7029757 -177258905 + AluSx SINE Alu 1 304 0 1958 140 164 32 chr4 7029757 7029790 -177258872 - MSTA LTR MaLR -400 28 1 1761 199 70 3 chr4 7030479 7030821 -177257841 + MLT1A1 LTR MaLR 1 365 0 386 285 148 54 chr4 7031657 7032027 -177256635 - L2 LINE L2 -284 2988 2590 843 286 68 39 chr4 7032634 7032716 -177255946 - MLT1L LTR MaLR -14 601 523 1663 194 0 9 chr4 7032716 7033031 -177255631 + AluJo SINE Alu 1 312 0 843 286 68 39 chr4 7033031 7033434 -177255228 - MLT1L LTR MaLR -92 523 102 339 321 44 0 chr4 7033798 7033935 -177254727 - MIR SINE MIR -6 256 114 256 204 0 0 chr4 7034177 7034221 -177254441 + MLT1F1 LTR MaLR 82 125 -442 2636 219 14 10 chr4 7034221 7034811 -177253851 + L1MD3 LINE L1 7404 7995 0 411 273 64 52 chr4 7035165 7035432 -177253230 + HAL1 LINE L1 801 1070 -1437 312 203 29 94 chr4 7035407 7035545 -177253117 + L1MA4 LINE L1 6165 6293 -7 * 6637 180 19 20 chr4 7035624 7037513 -177251149 + L1PA16 LINE L1 3895 5779 -387 1952 169 0 0 chr4 7037513 7037820 -177250842 + AluSx SINE Alu 1 307 -5 6637 180 19 20 chr4 7037820 7038206 -177250456 + L1PA16 LINE L1 5779 6164 -2 573 316 33 9 chr4 7038261 7038473 -177250189 - MIR SINE MIR 0 262 46 2556 117 14 0 chr4 7038553 7038912 -177249750 - THE1B LTR MaLR 0 364 1 10126 111 60 2 chr4 7038912 7040406 -177248256 - THE1B-int LTR MaLR 0 1580 1 2408 135 6 6 chr4 7040406 7040770 -177247892 - THE1B LTR MaLR 0 364 1 557 251 35 18 chr4 7041098 7041269 -177247393 - MER69A DNA AcHobo -2 175 2 1456 206 102 75 chr4 7041561 7041843 -177246819 - MER34 LTR ERV1 -9 533 235 2571 53 0 31 chr4 7041843 7042164 -177246498 + AluY SINE Alu 1 311 0 1456 206 102 75 chr4 7042164 7042283 -177246379 - MER34 LTR ERV1 -307 235 121 8552 202 54 29 chr4 7042283 7042719 -177245943 - MER34-int LTR ERV1 -250 4686 4262 2126 122 11 63 chr4 7042719 7043081 -177245581 + MER61A LTR ERV1 1 343 0 8552 202 54 29 chr4 7043081 7044723 -177243939 - MER34-int LTR ERV1 -674 4262 2556 26369 39 9 0 chr4 7044723 7050517 -177238145 + L1PA4 LINE L1 2 5832 -323 749 54 0 0 chr4 7050552 7050645 -177238017 + L1PA4 LINE L1 6054 6146 -9 402 194 101 36 chr4 7050652 7050791 -177237871 - MER34-int LTR ERV1 -3558 1378 1231 294 281 52 44 chr4 7051110 7051245 -177237417 - MER34-int LTR ERV1 -6147 654 519 1342 186 129 73 chr4 7051258 7051706 -177236956 - MER66A LTR ERV1 0 601 100 2528 201 44 2 chr4 7052141 7052638 -177236024 - MER34 LTR ERV1 0 542 25 659 290 47 53 chr4 7052985 7053437 -177235225 + LTR16A1 LTR ERVL 4 452 -5 189 259 155 0 chr4 7053457 7053515 -177235147 - L2 LINE L2 -65 3207 3141 365 301 81 0 chr4 7054195 7054331 -177234331 - MIR SINE MIR -70 192 46 235 312 0 0 chr4 7054434 7054511 -177234151 + MIR SINE MIR 176 252 -10 243 250 0 0 chr4 7054526 7054610 -177234052 + (CTG)n Simple_repeat Simple_repeat 3 86 0 383 309 17 11 chr4 7054616 7054852 -177233810 + (TTG)n Simple_repeat Simple_repeat 1 237 0 381 276 19 12 chr4 7055158 7055481 -177233181 + (TTG)n Simple_repeat Simple_repeat 1 325 0 232 324 124 0 chr4 7056082 7056187 -177232475 + L2 LINE L2 3150 3267 -5 2206 104 20 0 chr4 7056358 7056655 -177232007 - AluSq SINE Alu -10 303 1 1227 188 38 15 chr4 7056963 7057224 -177231438 - L1MA9 LINE L1 -38 6274 6008 352 221 26 62 chr4 7057557 7057670 -177230992 - MIR SINE MIR -68 194 86 312 163 0 0 chr4 7057774 7057823 -177230839 - MLT2D LTR ERVL 0 414 366 1340 143 177 33 chr4 7057827 7057934 -177230728 + MER2 DNA MER2_type 3 93 -252 3525 125 9 24 chr4 7057934 7058469 -177230193 + MER1A DNA MER1_type 1 527 0 1340 143 177 33 chr4 7058469 7058661 -177230001 + MER2 DNA MER2_type 93 345 0 1652 203 72 6 chr4 7058661 7059010 -177229652 - MLT2D LTR ERVL -42 372 1 1125 249 76 15 chr4 7059534 7060107 -177228555 - L2 LINE L2 0 3313 2700 741 301 115 8 chr4 7060283 7060695 -177227967 - L2 LINE L2 -204 3109 2655 279 314 51 8 chr4 7060783 7060901 -177227761 + L2 LINE L2 3189 3311 -2 294 95 0 0 chr4 7060902 7060944 -177227718 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 207 0 0 0 chr4 7061361 7061384 -177227278 + (A)n Simple_repeat Simple_repeat 1 23 0 495 306 39 69 chr4 7061636 7061996 -177226666 - LTR67 LTR ERVL -124 433 85 1020 129 14 37 chr4 7062004 7062140 -177226522 - MLT1A2 LTR MaLR -1 373 235 345 47 0 0 chr4 7062140 7062183 -177226479 + (GA)n Simple_repeat Simple_repeat 2 44 0 1020 129 14 37 chr4 7062183 7062365 -177226297 - MLT1A2 LTR MaLR -139 235 1 281 50 25 0 chr4 7062472 7062512 -177226150 + L2 LINE L2 3214 3254 -18 21 36 0 0 chr4 7062925 7062953 -177225709 + AT_rich Low_complexity Low_complexity 1 28 0 2541 65 0 0 chr4 7063045 7063339 -177225323 + AluY SINE Alu 1 294 -17 302 230 73 51 chr4 7063346 7063524 -177225138 + L1MC/D LINE L1 5258 5439 -2369 1853 244 54 9 chr4 7063540 7064304 -177224358 + L1ME1 LINE L1 60 897 -5499 2508 237 50 35 chr4 7064305 7066319 -177222343 + L1ME1 LINE L1 3028 5212 -1023 216 0 0 0 chr4 7066319 7066343 -177222319 + (CA)n Simple_repeat Simple_repeat 2 25 0 2508 237 50 35 chr4 7066343 7067376 -177221286 + L1ME1 LINE L1 5212 6228 -7 318 315 0 0 chr4 7067386 7067478 -177221184 + L1MC/D LINE L1 5427 5518 -2290 21 0 0 0 chr4 7067572 7067593 -177221069 + AT_rich Low_complexity Low_complexity 1 21 0 597 278 128 18 chr4 7067737 7068018 -177220644 - L2 LINE L2 -3 3310 2999 270 336 0 9 chr4 7068202 7068312 -177220350 + MIR SINE MIR 45 153 -55 375 257 83 0 chr4 7068321 7068430 -177220232 - L2 LINE L2 -3 3269 3152 952 201 67 48 chr4 7068433 7068702 -177219960 + MLT1A2 LTR MaLR 2 275 -99 1800 164 0 11 chr4 7068716 7069003 -177219659 + AluJb SINE Alu 5 288 -24 586 254 31 21 chr4 7069117 7069310 -177219352 + MIR SINE MIR 34 228 -34 189 107 0 0 chr4 7071726 7071754 -177216908 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 385 247 55 41 chr4 7071860 7072006 -177216656 + MIR SINE MIR 8 155 -107 251 229 41 82 chr4 7072155 7072277 -177216385 + MLT1J2 LTR MaLR 3 119 -331 6838 36 0 1 chr4 7072466 7073268 -177215394 + L1PA4 LINE L1 5352 6152 -3 7074 183 169 16 chr4 7073327 7074843 -177213819 + MER52A LTR ERV1 1 1749 -6 504 224 131 90 chr4 7074860 7075105 -177213557 + MLT1J LTR MaLR 257 511 0 471 219 31 25 chr4 7075298 7075458 -177213204 - L1ME4a LINE L1 -2 6119 5959 437 110 14 0 chr4 7075479 7075552 -177213110 + (TTCC)n Simple_repeat Simple_repeat 1 74 0 277 306 39 54 chr4 7075760 7076011 -177212651 - MIR SINE MIR -5 257 9 260 211 211 0 chr4 7076126 7076221 -177212441 - MIR SINE MIR -116 146 32 1967 126 99 15 chr4 7076337 7076671 -177211991 + THE1B LTR MaLR 3 364 0 12400 79 6 0 chr4 7076671 7078237 -177210425 + THE1B-int LTR MaLR 1 1575 -5 2339 99 51 26 chr4 7078243 7078595 -177210067 + THE1B LTR MaLR 4 364 0 699 285 52 38 chr4 7078597 7078966 -177209696 - HAL1 LINE L1 -100 2407 2034 397 219 31 0 chr4 7078963 7079059 -177209603 + L1MC5 LINE L1 7690 7788 -173 * 597 309 78 25 chr4 7079202 7079522 -177209140 + L1MEc LINE L1 208 544 -5852 2619 115 33 14 chr4 7079568 7079987 -177208675 - MSTA LTR MaLR -1 427 1 700 199 97 58 chr4 7080055 7080281 -177208381 + L1MB8 LINE L1 5944 6178 0 729 288 30 9 chr4 7080282 7080619 -177208043 + L1MEc LINE L1 673 1016 -5380 1454 272 67 54 chr4 7080648 7081262 -177207400 + L1MCb LINE L1 3 624 -5421 481 171 29 19 chr4 7081289 7081394 -177207268 - L1MC5 LINE L1 -173 7788 7683 * 623 265 65 33 chr4 7081382 7081560 -177207102 + HAL1 LINE L1 2034 2224 -283 234 0 0 0 chr4 7081560 7081586 -177207076 + (TG)n Simple_repeat Simple_repeat 2 27 0 623 265 65 33 chr4 7081586 7081652 -177207010 + HAL1 LINE L1 2224 2286 -221 8547 242 42 19 chr4 7081698 7082440 -177206222 + L1MCb LINE L1 2442 3166 -3398 2278 110 0 7 chr4 7082440 7082748 -177205914 + AluSg SINE Alu 1 306 -4 8547 242 42 19 chr4 7082748 7084828 -177203834 + L1MCb LINE L1 3166 5284 -1280 5881 157 34 81 chr4 7084827 7085453 -177203209 + L1MC3 LINE L1 5914 6443 -1342 * 1659 192 27 3 chr4 7085453 7085577 -177203085 + AluJb SINE Alu 1 121 -191 216 0 0 0 chr4 7085577 7085601 -177203061 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1659 192 27 3 chr4 7085601 7085773 -177202889 + AluJb SINE Alu 121 304 -8 5881 157 34 81 chr4 7085773 7086488 -177202174 + L1MC3 LINE L1 6443 7191 -594 1988 131 38 35 chr4 7086830 7087196 -177201466 - THE1C LTR MaLR -8 367 1 23 0 0 0 chr4 7087216 7087239 -177201423 + AT_rich Low_complexity Low_complexity 1 23 0 331 303 127 21 chr4 7087296 7087438 -177201224 - MIR SINE MIR -74 188 32 229 265 61 41 chr4 7087791 7087889 -177200773 - MIR SINE MIR -162 100 1 273 346 31 25 chr4 7088196 7088355 -177200307 + MIR SINE MIR 37 196 -66 352 288 11 34 chr4 7088677 7088810 -177199852 + MIR SINE MIR 16 150 -58 575 225 46 101 chr4 7089837 7089892 -177198770 - MER63A DNA MER1_type -1478 210 154 2022 131 17 3 chr4 7089892 7090182 -177198480 - AluSc SINE Alu -15 294 1 575 225 46 101 chr4 7090182 7090344 -177198318 - MER63A DNA MER1_type -1534 154 5 298 206 0 29 chr4 7090803 7090871 -177197791 - L3 LINE CR1 -533 1044 979 32831 39 7 1 chr4 7091619 7096352 -177192310 + L1PA4 LINE L1 1388 6150 -5 832 70 9 0 chr4 7096352 7096466 -177192196 + MER4E LTR ERV1 408 522 -244 254 295 51 0 chr4 7296471 7296549 -176992113 + MIR SINE MIR 173 254 -8 867 246 188 56 chr4 7297632 7298256 -176990406 + L2 LINE L2 2573 3313 0 317 308 11 11 chr4 7298295 7298386 -176990276 + MIR3 SINE MIR 8 98 -110 208 349 0 0 chr4 7298570 7298633 -176990029 + (ATG)n Simple_repeat Simple_repeat 2 64 0 817 157 29 34 chr4 7298636 7298834 -176989828 + MER6 DNA MER2_type -65 865 0 466 163 24 91 chr4 7298869 7299045 -176989617 - MIR SINE MIR 0 262 101 526 162 0 20 chr4 7299253 7299352 -176989310 - MER3 DNA MER1_type -104 105 9 609 308 59 26 chr4 7299408 7299713 -176988949 - L2 LINE L2 -3 3310 2996 1150 286 175 25 chr4 7299716 7300432 -176988230 - L2 LINE L2 -506 2808 1986 1802 207 35 72 chr4 7300444 7300960 -176987702 + MLT1D LTR MaLR 3 499 -6 211 250 86 35 chr4 7300972 7301088 -176987574 - L2 LINE L2 -1340 1974 1853 243 247 214 11 chr4 7301368 7301457 -176987205 + L2 LINE L2 3166 3272 0 605 176 0 17 chr4 7301582 7301701 -176986961 - L1MC2 LINE L1 -9 6335 6219 2113 120 3 0 chr4 7301701 7302010 -176986652 - AluSx SINE Alu -2 310 1 1069 145 0 79 chr4 7302028 7302255 -176986407 - AluJo SINE Alu -12 300 92 1243 170 17 4 chr4 7302255 7302515 -176986147 - L1M3 LINE L1 -353 5818 5549 416 298 76 8 chr4 7303412 7303543 -176985119 - MIR3 SINE MIR -64 144 5 221 197 45 76 chr4 7303577 7303643 -176985019 - MIR SINE MIR -105 103 40 2281 76 0 20 chr4 7303819 7304123 -176984539 + AluY SINE Alu 1 298 -13 1596 205 58 54 chr4 7304559 7305062 -176983600 - MLT1D LTR MaLR 0 505 1 515 303 113 42 chr4 7305065 7305471 -176983191 - MLT1K LTR MaLR -28 560 126 327 296 30 54 chr4 7306207 7306408 -176982254 - MIR SINE MIR -47 215 21 2220 93 3 7 chr4 7306492 7306802 -176981860 - AluSc SINE Alu 0 309 1 373 299 36 7 chr4 7306919 7307056 -176981606 - MIR SINE MIR -81 181 41 722 286 15 0 chr4 7307854 7308050 -176980612 - MIR SINE MIR 0 262 64 1274 232 141 20 chr4 7308190 7308638 -176980024 - MLT1D LTR MaLR -2 503 1 196 239 0 0 chr4 7308662 7308708 -176979954 - L3 LINE CR1 -126 1451 1406 2822 9 0 0 chr4 7308967 7309282 -176979380 - AluYb8 SINE Alu -2 316 2 467 232 72 16 chr4 7309345 7309470 -176979192 + MIR SINE MIR 20 151 -111 833 165 0 0 chr4 7309541 7309674 -176978988 + FLAM_C SINE Alu 1 133 0 2899 194 14 45 chr4 7310982 7311602 -176977060 - MER77 LTR ERV1 0 605 5 299 242 23 117 chr4 7311645 7311909 -176976753 - L1MC4a LINE L1 -1777 6031 5793 226 241 19 0 chr4 7312785 7312839 -176975823 - MIR SINE MIR -32 230 176 246 216 91 0 chr4 7312985 7313073 -176975589 - L1MC4 LINE L1 0 8042 7947 401 271 26 58 chr4 7313383 7313538 -176975124 - MIR SINE MIR -105 157 8 376 230 11 0 chr4 7313571 7313658 -176975004 - MER117 DNA MER1_type -40 157 70 207 290 54 32 chr4 7313858 7313951 -176974711 + MIR SINE MIR 21 115 -147 185 350 41 0 chr4 7314425 7314522 -176974140 + MIR SINE MIR 110 210 -52 2013 120 0 0 chr4 7314582 7314894 -176973768 - AluSq SINE Alu 0 312 1 238 315 48 48 chr4 7315244 7315390 -176973272 + MIR SINE MIR 76 221 -41 718 177 0 0 chr4 7315523 7315647 -176973015 + FLAM_A SINE Alu 12 135 -7 330 26 0 0 chr4 7315744 7315783 -176972879 + (TG)n Simple_repeat Simple_repeat 2 40 0 309 266 13 25 chr4 7315786 7315865 -176972797 + L1MC4 LINE L1 6648 6725 -1317 482 279 95 54 chr4 7316527 7316842 -176971820 + HAL1 LINE L1 549 876 -1631 887 259 112 61 chr4 7316880 7317582 -176971080 + HAL1 LINE L1 961 1985 -522 1389 171 16 68 chr4 7317582 7317903 -176970759 + AluJo SINE Alu 1 304 -8 887 259 112 61 chr4 7317903 7318099 -176970563 + HAL1 LINE L1 1985 2169 -338 372 271 53 13 chr4 7318167 7318318 -176970344 + HAL1 LINE L1 2018 2174 -333 3022 110 43 0 chr4 7318908 7319172 -176969490 - L1P4 LINE L1 -412 5756 5464 1985 114 3 20 chr4 7319172 7319478 -176969184 - AluSq SINE Alu -12 301 1 3022 110 43 0 chr4 7319478 7319659 -176969003 - L1P4 LINE L1 -704 5464 5292 433 221 73 7 chr4 7319702 7319838 -176968824 - L1MC5 LINE L1 -753 7208 7064 1609 103 22 0 chr4 7320889 7321121 -176967541 + L1PA13 LINE L1 5927 6163 0 2642 158 16 5 chr4 7321257 7321739 -176966923 + L1MA4 LINE L1 5546 6045 -123 1911 79 0 0 chr4 7321776 7322016 -176966646 + AluSc SINE Alu 1 240 -69 320 287 11 0 chr4 7323214 7323301 -176965361 + MIR SINE MIR 86 173 -89 581 213 0 28 chr4 7323308 7323449 -176965213 - L1MA10 LINE L1 0 6334 6198 387 186 17 169 chr4 7323461 7323587 -176965075 - L1ME1 LINE L1 -174 5992 5895 2068 114 0 0 chr4 7323587 7323890 -176964772 - AluSx SINE Alu 0 303 1 387 186 17 169 chr4 7323890 7323933 -176964729 - L1ME1 LINE L1 -271 5895 5847 2049 247 144 25 chr4 7324050 7324861 -176963801 - HAL1 LINE L1 -1478 1029 122 419 194 43 21 chr4 7325180 7325273 -176963389 - MIR SINE MIR -100 162 68 3040 120 12 58 chr4 7325679 7326354 -176962308 - L1PA3 LINE L1 -3 6152 5509 2083 104 20 0 chr4 7326796 7327093 -176961569 - AluSq SINE Alu -10 303 1 1228 188 38 15 chr4 7327401 7327662 -176961000 - L1MA9 LINE L1 -38 6274 6008 406 221 26 62 chr4 7327995 7328108 -176960554 - MIR SINE MIR -68 194 86 313 163 0 0 chr4 7328212 7328261 -176960401 - MLT2D LTR ERVL 0 414 366 534 128 284 9 chr4 7328265 7328372 -176960290 + MER2 DNA MER2_type 3 139 -206 3221 106 7 28 chr4 7328372 7328833 -176959829 + MER1A DNA MER1_type 1 451 -78 1119 219 192 39 chr4 7329707 7330032 -176958630 + MLT1D LTR MaLR 1 411 -94 1035 206 0 0 chr4 7330032 7330255 -176958407 - L1MA4 LINE L1 -1 6299 6077 1119 219 192 39 chr4 7330255 7330367 -176958295 + MLT1D LTR MaLR 411 505 0 232 296 122 9 chr4 7330526 7330641 -176958021 + MIR SINE MIR 120 247 -15 243 269 0 0 chr4 7331341 7331393 -176957269 + MIR SINE MIR 209 260 -2 320 381 28 23 chr4 7332399 7332575 -176956087 + MIR SINE MIR 10 186 -76 243 0 0 0 chr4 7332615 7332642 -176956020 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 306 0 0 0 chr4 7332641 7332675 -176955987 + (GA)n Simple_repeat Simple_repeat 2 35 0 748 215 48 27 chr4 7332676 7332862 -176955800 - MIR SINE MIR -72 190 1 204 244 22 0 chr4 7332881 7332926 -176955736 + L2 LINE L2 3210 3255 -17 532 237 14 3 chr4 7333027 7333386 -176955276 + (TGGA)n Simple_repeat Simple_repeat 1 363 0 544 237 23 62 chr4 7333712 7333969 -176954693 + Charlie3 DNA MER1_type 2458 2704 -6 414 115 33 0 chr4 7334105 7334166 -176954496 + MER2 DNA MER2_type 283 345 0 1667 203 72 6 chr4 7334166 7334515 -176954147 - MLT2D LTR ERVL -42 372 1 1301 249 76 15 chr4 7335039 7335612 -176953050 - L2 LINE L2 0 3313 2700 846 298 112 8 chr4 7335788 7336200 -176952462 - L2 LINE L2 -204 3109 2655 331 314 51 8 chr4 7336289 7336407 -176952255 + L2 LINE L2 3189 3311 -2 294 95 0 0 chr4 7336408 7336450 -176952212 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 207 0 0 0 chr4 7336867 7336890 -176951772 + (A)n Simple_repeat Simple_repeat 1 23 0 517 306 39 69 chr4 7337142 7337502 -176951160 - LTR67 LTR ERVL -124 433 85 1027 129 14 37 chr4 7337510 7337646 -176951016 - MLT1A2 LTR MaLR -1 373 235 345 47 0 0 chr4 7337646 7337689 -176950973 + (GA)n Simple_repeat Simple_repeat 2 44 0 1027 129 14 37 chr4 7337689 7337871 -176950791 - MLT1A2 LTR MaLR -139 235 1 306 100 183 0 chr4 7337958 7338018 -176950644 + L2 LINE L2 3184 3254 -18 21 36 0 0 chr4 7338431 7338459 -176950203 + AT_rich Low_complexity Low_complexity 1 28 0 2418 61 0 0 chr4 7338551 7338845 -176949817 + AluY SINE Alu 1 294 -17 294 230 73 51 chr4 7338852 7339030 -176949632 + L1MC/D LINE L1 5258 5439 -2369 1901 246 50 19 chr4 7339046 7339811 -176948851 + L1ME1 LINE L1 60 897 -5499 2512 239 49 34 chr4 7339812 7341826 -176946836 + L1ME1 LINE L1 3028 5212 -1023 216 0 0 0 chr4 7341826 7341850 -176946812 + (CA)n Simple_repeat Simple_repeat 2 25 0 2512 239 49 34 chr4 7341850 7342883 -176945779 + L1ME1 LINE L1 5212 6228 -7 326 315 0 0 chr4 7342893 7342985 -176945677 + L1MC/D LINE L1 5427 5518 -2290 21 0 0 0 chr4 7343078 7343099 -176945563 + AT_rich Low_complexity Low_complexity 1 21 0 1112 226 33 7 chr4 7344474 7344646 -176944016 - L1MEc LINE L1 -4236 2160 1975 4154 93 35 10 chr4 7344646 7345237 -176943425 + MER4B LTR ERV1 5 610 0 1112 226 33 7 chr4 7345237 7345370 -176943292 - L1MEc LINE L1 -4421 1975 1847 1779 165 71 19 chr4 7345376 7345740 -176942922 - L1MB5 LINE L1 -8 6166 5784 1748 184 127 29 chr4 7345837 7346255 -176942407 - LTR2B LTR ERV1 0 490 32 4159 271 70 30 chr4 7346273 7347085 -176941577 - L1MEc LINE L1 -4631 1765 987 883 86 78 0 chr4 7347085 7347213 -176941449 + MER85 DNA T2_type 1 138 -1 4159 271 70 30 chr4 7347213 7348063 -176940599 - L1MEc LINE L1 -5409 987 36 437 184 31 20 chr4 7348063 7348161 -176940501 + MIR SINE MIR 162 260 -2 2879 149 7 2 chr4 7348586 7349023 -176939639 + MER72 LTR ERV1 6 444 -278 2236 114 64 9 chr4 7349023 7349366 -176939296 - THE1C LTR MaLR 0 375 14 2020 135 0 0 chr4 7349360 7349648 -176939014 + MER72 LTR ERV1 435 722 0 * 4154 175 17 11 chr4 7350684 7351122 -176937540 + MER50 LTR ERV1 1 446 -288 2498 92 53 8 chr4 7351122 7351481 -176937181 + THE1C LTR MaLR 1 375 0 4154 175 17 11 chr4 7351481 7351749 -176936913 + MER50 LTR ERV1 446 711 -23 44615 40 2 2 chr4 7351840 7357727 -176930935 + L1PA3 LINE L1 1 5887 -268 730 271 128 18 chr4 7357970 7358251 -176930411 - L2 LINE L2 -3 3310 2999 309 336 0 9 chr4 7358435 7358545 -176930117 + MIR SINE MIR 45 153 -55 420 257 83 0 chr4 7358554 7358663 -176929999 - L2 LINE L2 -3 3269 3152 962 201 67 48 chr4 7358666 7358935 -176929727 + MLT1A2 LTR MaLR 2 275 -99 1689 164 0 11 chr4 7358949 7359236 -176929426 + AluJb SINE Alu 5 288 -24 675 275 29 24 chr4 7359336 7359543 -176929119 + MIR SINE MIR 21 228 -34 202 308 169 6 chr4 7361680 7361852 -176926810 + L2 LINE L2 2854 3053 -219 189 107 0 0 chr4 7361959 7361987 -176926675 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 181 219 0 0 chr4 7361988 7362020 -176926642 - L2 LINE L2 -12 3260 3229 430 238 54 48 chr4 7362093 7362240 -176926422 + MIR SINE MIR 8 155 -107 236 226 30 52 chr4 7362390 7362511 -176926151 + MLT1J LTR MaLR 4 157 -331 6756 41 0 1 chr4 7362700 7363502 -176925160 + L1PA4 LINE L1 5352 6152 -3 7221 184 169 16 chr4 7363561 7365077 -176923585 + MER52A LTR ERV1 1 1749 -6 505 224 131 90 chr4 7365094 7365339 -176923323 + MLT1J LTR MaLR 257 511 0 464 219 31 25 chr4 7365532 7365692 -176922970 - L1ME4a LINE L1 -2 6119 5959 314 123 18 0 chr4 7365713 7365770 -176922892 + CT-rich Low_complexity Low_complexity 1 58 0 369 294 69 50 chr4 7365978 7366228 -176922434 - MIR SINE MIR -5 257 2 333 314 147 5 chr4 7366248 7366439 -176922223 - MIR SINE MIR -13 249 32 1987 123 99 15 chr4 7366555 7366889 -176921773 + THE1B LTR MaLR 3 364 0 12449 79 6 0 chr4 7366889 7368455 -176920207 + THE1B-int LTR MaLR 1 1575 -5 2342 99 51 26 chr4 7368461 7368813 -176919849 + THE1B LTR MaLR 4 364 0 665 287 54 41 chr4 7368815 7369184 -176919478 - HAL1 LINE L1 -100 2407 2034 392 219 31 0 chr4 7369181 7369277 -176919385 + L1MC5 LINE L1 7690 7788 -173 * 613 297 81 28 chr4 7369420 7369740 -176918922 + L1MEc LINE L1 208 544 -5852 2615 117 33 14 chr4 7369786 7370205 -176918457 - MSTA LTR MaLR -1 427 1 690 199 97 58 chr4 7370273 7370499 -176918163 + L1MB8 LINE L1 5944 6178 0 732 288 30 9 chr4 7370500 7370837 -176917825 + L1MEc LINE L1 673 1016 -5380 1476 272 67 54 chr4 7370866 7371480 -176917182 + L1MCb LINE L1 3 624 -5421 478 171 29 19 chr4 7371507 7371612 -176917050 - L1MC5 LINE L1 -173 7788 7683 * 577 262 65 44 chr4 7371600 7371778 -176916884 + HAL1 LINE L1 2034 2220 -287 234 0 0 0 chr4 7371778 7371804 -176916858 + (TG)n Simple_repeat Simple_repeat 2 27 0 577 262 65 44 chr4 7371804 7371873 -176916789 + HAL1 LINE L1 2220 2286 -221 6195 246 49 15 chr4 7371919 7372661 -176916001 + L1MCb LINE L1 2442 3157 -3407 2120 116 0 7 chr4 7372661 7372971 -176915691 + AluSg SINE Alu 1 308 -2 6195 246 49 15 chr4 7372971 7374403 -176914259 + L1MCb LINE L1 3157 4647 -1917 580 324 5 0 chr4 7374507 7374692 -176913970 - MIR SINE MIR -38 224 39 2167 103 7 0 chr4 7374956 7375258 -176913404 - AluSq SINE Alu -9 304 1 196 296 122 61 chr4 7375442 7375736 -176912926 - L2 LINE L2 -46 3226 2915 331 311 49 44 chr4 7375754 7375937 -176912725 - L2 LINE L2 -508 2806 2623 2436 162 76 8 chr4 7376069 7376556 -176912106 + L1MB5 LINE L1 5592 6111 -63 316 268 173 36 chr4 7377182 7377350 -176911312 + L1ME4a LINE L1 5853 6043 -78 206 341 22 52 chr4 7377511 7377646 -176911016 - MIR3 SINE MIR -40 168 38 339 175 16 16 chr4 7377840 7377903 -176910759 + MIR3 SINE MIR 133 195 -13 188 341 141 22 chr4 7378237 7378372 -176910290 - L2 LINE L2 -598 2716 2566 306 269 121 0 chr4 7378881 7379022 -176909640 - L1M4 LINE L1 -1301 4845 4688 2155 107 3 0 chr4 7379116 7379415 -176909247 + AluSq SINE Alu 3 302 -11 898 251 31 4 chr4 7380555 7380782 -176907880 - MIR SINE MIR -1 261 29 260 314 101 0 chr4 7380854 7381013 -176907649 + MER91A DNA MER1_type 22 196 0 407 215 13 0 chr4 7381398 7381477 -176907185 + MIR SINE MIR 2 81 -181 2795 187 19 0 chr4 7381479 7381965 -176906697 + MER68 LTR ERV1 3 497 -65 * 4067 117 23 143 chr4 7381960 7382220 -176906442 - Tigger3b DNA MER2_type -1797 1232 943 2034 108 17 0 chr4 7382220 7382507 -176906155 + AluSx SINE Alu 21 312 0 4067 117 23 143 chr4 7382507 7382688 -176905974 - Tigger3b DNA MER2_type -2086 943 742 1857 150 3 10 chr4 7382688 7382988 -176905674 - AluSx SINE Alu -14 298 1 4067 117 23 143 chr4 7382988 7383067 -176905595 - Tigger3b DNA MER2_type -2287 742 655 204 40 0 0 chr4 7383067 7383092 -176905570 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 4067 117 23 143 chr4 7383092 7383976 -176904686 - Tigger3b DNA MER2_type -2374 655 1 392 116 29 14 chr4 7383976 7384045 -176904617 + MER68 LTR ERV1 491 560 -2 562 276 61 33 chr4 7384047 7384228 -176904434 + MIR SINE MIR 77 262 0 784 243 70 27 chr4 7385343 7385599 -176903063 + MIR SINE MIR 3 259 -3 200 244 0 23 chr4 7385610 7385658 -176903004 + (TAG)n Simple_repeat Simple_repeat 3 50 -36 2210 109 3 0 chr4 7385658 7385969 -176902693 + AluSq SINE Alu 1 312 -1 200 244 0 23 chr4 7385969 7386006 -176902656 + (TAG)n Simple_repeat Simple_repeat 50 86 0 2283 96 0 0 chr4 7386026 7386328 -176902334 + AluSq SINE Alu 1 302 -11 556 244 8 8 chr4 7386923 7387046 -176901616 - L2 LINE L2 -8 3305 3183 216 0 0 0 chr4 7387744 7387768 -176900894 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 186 254 34 17 chr4 7387859 7387918 -176900744 + MIR SINE MIR 81 140 -68 1673 182 65 11 chr4 7388125 7388493 -176900169 + MLT1B LTR MaLR 1 388 -2 293 302 59 27 chr4 7388495 7388697 -176899965 - MIR SINE MIR 0 262 12 33 25 0 0 chr4 7389689 7389729 -176898933 + AT_rich Low_complexity Low_complexity 1 40 0 516 323 114 24 chr4 7390146 7390480 -176898182 - L3 LINE CR1 -17 1560 1197 367 322 128 0 chr4 7390492 7390719 -176897943 - L2 LINE L2 -509 2805 2550 524 189 28 9 chr4 7390930 7391036 -176897626 - MLT1C LTR MaLR -7 460 353 262 273 55 55 chr4 7391238 7391348 -176897314 - MER5A DNA MER1_type 0 189 80 1862 186 83 34 chr4 7391351 7391796 -176896866 - MLT1C LTR MaLR 0 467 1 344 403 14 0 chr4 7391820 7391959 -176896703 + L3 LINE CR1 1436 1576 -1 272 91 23 0 chr4 7392070 7392114 -176896548 + L1MC3 LINE L1 7550 7594 -191 926 155 83 6 chr4 7392115 7392296 -176896366 + L1MC2 LINE L1 6138 6332 -12 2318 72 0 0 chr4 7392424 7392716 -176895946 + AluSx SINE Alu 1 292 -20 354 98 0 0 chr4 7394248 7394299 -176894363 + (GGGA)n Simple_repeat Simple_repeat 4 54 0 188 283 0 0 chr4 7394432 7394478 -176894184 - L2 LINE L2 -8 3264 3219 194 283 0 0 chr4 7394654 7394700 -176893962 + MIR SINE MIR 30 75 -133 180 263 30 50 chr4 7394774 7394873 -176893789 + L2 LINE L2 920 1016 -2298 1523 221 85 32 chr4 7394895 7395356 -176893306 + MLT1D LTR MaLR 21 505 0 223 213 147 13 chr4 7395469 7395544 -176893118 - MIR SINE MIR -173 89 5 310 302 223 0 chr4 7395629 7395894 -176892768 + L2 LINE L2 1228 1551 -1763 379 274 18 97 chr4 7396107 7396333 -176892329 - L2 LINE L2 -28 3285 3078 189 345 0 0 chr4 7396673 7396731 -176891931 + L2 LINE L2 3215 3272 0 198 333 109 14 chr4 7396802 7396940 -176891722 + MIR SINE MIR 88 238 -24 291 270 92 50 chr4 7397213 7397353 -176891309 + MIR3 SINE MIR 71 237 -25 185 259 0 69 chr4 7397931 7397989 -176890673 + L2 LINE L2 3249 3302 -11 197 235 12 99 chr4 7399243 7399324 -176889338 - MIR SINE MIR -116 146 73 * 254 343 20 0 chr4 7399323 7399422 -176889240 + MIR SINE MIR 52 152 -110 893 243 53 0 chr4 7400251 7400457 -176888205 + MIR SINE MIR 13 229 -33 234 303 66 53 chr4 7400544 7400772 -176887890 + L2 LINE L2 2806 3036 -236 803 111 0 22 chr4 7400773 7400908 -176887754 + L1PA13 LINE L1 6031 6162 -1 287 29 29 105 chr4 7400961 7401066 -176887596 + (TATAA)n Simple_repeat Simple_repeat 3 99 0 324 114 53 35 chr4 7401069 7401236 -176887426 + (TTATA)n Simple_repeat Simple_repeat 1 169 0 368 270 48 100 chr4 7401236 7401466 -176887196 + L2 LINE L2 3015 3232 -40 228 275 46 69 chr4 7401867 7401998 -176886664 + MIR SINE MIR 85 212 -50 2264 102 0 0 chr4 7402135 7402439 -176886223 + AluSx SINE Alu 5 308 -4 230 182 36 18 chr4 7402440 7402495 -176886167 - MIR3 SINE MIR -13 195 140 526 295 87 12 chr4 7402552 7402725 -176885937 - MIR SINE MIR -4 258 73 432 192 79 68 chr4 7403206 7403383 -176885279 + LTR16C LTR ERVL 298 476 -15 214 230 92 7 chr4 7403383 7403535 -176885127 + (GTGTG)n Simple_repeat Simple_repeat 3 167 0 292 319 104 25 chr4 7403607 7403657 -176885005 + MER5B DNA MER1_type 1 46 -132 870 238 6 0 chr4 7403657 7403829 -176884833 + FAM SINE Alu 2 174 -1 292 319 104 25 chr4 7403829 7403941 -176884721 + MER5B DNA MER1_type 46 176 -2 253 314 41 0 chr4 7404213 7404334 -176884328 + MIR3 SINE MIR 7 132 -76 234 188 0 0 chr4 7404699 7404747 -176883915 - HAL1b LINE L1 -556 792 745 460 317 108 34 chr4 7405093 7405566 -176883096 - HAL1 LINE L1 -590 1917 1410 486 286 181 26 chr4 7405578 7405844 -176882818 + L1ME4a LINE L1 5813 6119 -2 210 158 0 0 chr4 7405846 7405884 -176882778 + (TTA)n Simple_repeat Simple_repeat 3 40 0 295 235 81 59 chr4 7405927 7406063 -176882599 + LTR16A LTR ERVL 282 420 -30 * 2732 176 35 6 chr4 7406043 7406526 -176882136 - MER68 LTR ERV1 -65 497 1 1739 201 50 42 chr4 7407313 7407771 -176880891 + MLT1C LTR MaLR 6 467 0 281 355 83 0 chr4 7407773 7407894 -176880768 - MIR SINE MIR -54 208 78 2242 219 38 20 chr4 7408798 7409411 -176879251 + L1M4 LINE L1 4243 4866 -1280 * 5862 157 34 81 chr4 7409410 7410036 -176878626 + L1MC3 LINE L1 5914 6443 -1342 1543 192 27 3 chr4 7410036 7410160 -176878502 + AluJb SINE Alu 1 121 -191 216 0 0 0 chr4 7410160 7410184 -176878478 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1543 192 27 3 chr4 7410184 7410356 -176878306 + AluJb SINE Alu 121 304 -8 5862 157 34 81 chr4 7410356 7411071 -176877591 + L1MC3 LINE L1 6443 7191 -594 1998 131 38 35 chr4 7411413 7411779 -176876883 - THE1C LTR MaLR -8 367 1 23 0 0 0 chr4 7411799 7411822 -176876840 + AT_rich Low_complexity Low_complexity 1 23 0 395 296 127 21 chr4 7411879 7412021 -176876641 - MIR SINE MIR -74 188 32 267 265 61 41 chr4 7412374 7412472 -176876190 - MIR SINE MIR -162 100 1 332 346 31 25 chr4 7412779 7412938 -176875724 + MIR SINE MIR 37 196 -66 391 288 11 34 chr4 7413260 7413393 -176875269 + MIR SINE MIR 16 150 -58 567 234 37 92 chr4 7414420 7414475 -176874187 - MER63A DNA MER1_type -1478 210 154 1903 131 17 3 chr4 7414475 7414765 -176873897 - AluSc SINE Alu -15 294 1 567 234 37 92 chr4 7414765 7414927 -176873735 - MER63A DNA MER1_type -1534 154 5 330 206 0 29 chr4 7415386 7415454 -176873208 - L3 LINE CR1 -533 1044 979 197 303 10 61 chr4 7415583 7415682 -176872980 - L2 LINE L2 -853 2461 2368 200 368 88 7 chr4 7415721 7415857 -176872805 - L3 LINE CR1 -1026 551 405 2141 71 0 7 chr4 7416536 7416818 -176871844 + AluSx SINE Alu 23 302 -10 294 333 71 0 chr4 7417106 7417232 -176871430 + L2 LINE L2 3138 3272 0 26 0 0 0 chr4 7418080 7418106 -176870556 + AT_rich Low_complexity Low_complexity 1 26 0 308 263 10 10 chr4 7419141 7419240 -176869422 + (CA)n Simple_repeat Simple_repeat 1 99 0 1184 247 241 10 chr4 7420128 7420614 -176868048 + L1MD2 LINE L1 5730 6327 -32 305 198 64 10 chr4 7420620 7420694 -176867968 + AluJ/FLAM SINE Alu 1 60 -242 249 301 139 8 chr4 7420694 7420953 -176867709 - L2 LINE L2 -1163 2151 1859 372 351 119 21 chr4 7420988 7421375 -176867287 + L2 LINE L2 2843 3267 -5 4532 80 17 19 chr4 7421641 7422159 -176866503 + L1PB2 LINE L1 5513 6031 -120 2354 75 0 7 chr4 7422159 7422464 -176866198 + AluSx SINE Alu 1 303 -9 4532 80 17 19 chr4 7422464 7422585 -176866077 + L1PB2 LINE L1 6031 6151 0 1711 211 29 27 chr4 7422835 7423248 -176865414 + MLT2D LTR ERVL 1 414 0 1263 185 22 128 chr4 7423413 7423819 -176864843 + MLT1A1 LTR MaLR 1 363 -2 323 295 62 18 chr4 7424104 7424216 -176864446 + MIR SINE MIR 107 223 -39 1596 196 164 56 chr4 7424300 7424850 -176863812 + MLT1E2 LTR MaLR 18 626 0 269 186 57 43 chr4 7426631 7426701 -176861961 - L1ME4a LINE L1 -78 6043 5973 756 194 114 0 chr4 7426962 7427137 -176861525 + L1MD3 LINE L1 7793 7987 -8 317 292 62 80 chr4 7427751 7428076 -176860586 + L2 LINE L2 2915 3233 -39 735 335 13 4 chr4 7428174 7428401 -176860261 - MIR SINE MIR -33 229 1 194 318 39 70 chr4 7429266 7429395 -176859267 + L2 LINE L2 3111 3235 -37 478 282 35 53 chr4 7429455 7429682 -176858980 - MIR SINE MIR -12 250 28 203 256 0 0 chr4 7429699 7429742 -176858920 + L2 LINE L2 3271 3313 0 209 315 13 0 chr4 7429760 7429847 -176858815 + GA-rich Low_complexity Low_complexity 1 88 0 368 292 128 65 chr4 7429857 7430210 -176858452 - L2 LINE L2 -63 3209 2835 421 268 190 0 chr4 7430341 7430483 -176858179 + MIR SINE MIR 20 188 -74 1869 137 23 0 chr4 7430686 7430985 -176857677 + AluSx SINE Alu 1 306 -6 259 314 69 0 chr4 7431671 7431773 -176856889 + MIR3 SINE MIR 11 119 -89 2883 128 16 5 chr4 7431922 7432345 -176856317 + MSTA LTR MaLR 1 428 0 7881 181 47 7 chr4 7432347 7433852 -176854810 + MSTA-int LTR MaLR 3 1567 -13 2584 111 47 8 chr4 7433853 7434239 -176854423 + MSTA LTR MaLR 28 428 0 1165 305 55 19 chr4 7434247 7434988 -176853674 - L1M4 LINE L1 -2231 3915 3148 806 104 0 17 chr4 7435011 7435126 -176853536 - AluSg/x SINE Alu -17 295 183 24 32 0 0 chr4 7435401 7435432 -176853230 + AT_rich Low_complexity Low_complexity 1 31 0 496 245 193 30 chr4 7435724 7435957 -176852705 - L2 LINE L2 -940 2374 2104 1322 190 43 4 chr4 7436036 7436182 -176852480 - AluJo SINE Alu -30 282 120 207 0 0 0 chr4 7436182 7436205 -176852457 + (TA)n Simple_repeat Simple_repeat 1 23 0 1322 190 43 4 chr4 7436205 7436316 -176852346 - AluJo SINE Alu -192 120 15 2181 207 21 31 chr4 7436668 7437190 -176851472 - Charlie1b DNA MER1_type -6 517 1 261 283 11 33 chr4 7437211 7437303 -176851359 - L2 LINE L2 -62 3210 3121 269 327 44 9 chr4 7437357 7437470 -176851192 + L2 LINE L2 2904 3020 -252 197 284 0 15 chr4 7437567 7437615 -176851047 + L2 LINE L2 3207 3254 -18 1218 67 0 0 chr4 7437615 7437793 -176850869 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 291 28 0 0 chr4 7437793 7437829 -176850833 + (CATA)n Simple_repeat Simple_repeat 1 36 0 197 284 0 15 chr4 7437829 7437846 -176850816 + L2 LINE L2 3252 3272 0 203 256 49 12 chr4 7437948 7438030 -176850632 - MIR SINE MIR -65 143 59 193 261 101 43 chr4 7438477 7438546 -176850116 + MIR SINE MIR 109 181 -81 329 281 99 18 chr4 7439232 7439421 -176849241 - MIR SINE MIR -33 229 29 826 168 8 0 chr4 7441078 7441209 -176847453 - FLAM_C SINE Alu -10 133 2 214 242 0 97 chr4 7441420 7441482 -176847180 + MIR3 SINE MIR 99 154 -54 202 229 202 9 chr4 7442264 7442373 -176846289 + MIR SINE MIR 119 248 -14 21 36 0 0 chr4 7442613 7442641 -176846021 + GC_rich Low_complexity Low_complexity 1 28 0 555 228 179 0 chr4 7443534 7443679 -176844983 - MIR SINE MIR -8 254 84 376 310 76 18 chr4 7444230 7444401 -176844261 - MIR SINE MIR -75 187 7 210 330 44 0 chr4 7444406 7444497 -176844165 - MIR SINE MIR -96 166 72 202 260 231 0 chr4 7444485 7444589 -176844073 - L2 LINE L2 -697 2617 2490 * 325 278 125 65 chr4 7444654 7444737 -176843925 + L2 LINE L2 2698 2775 -497 2240 92 3 0 chr4 7444737 7445041 -176843621 + AluSx SINE Alu 1 305 -7 1551 118 4 0 chr4 7445041 7445267 -176843395 + AluSp SINE Alu 76 304 -9 325 278 125 65 chr4 7445267 7445591 -176843071 + L2 LINE L2 2774 3123 -149 1385 239 75 66 chr4 7445664 7446133 -176842529 - HAL1 LINE L1 0 2507 2029 1748 179 0 22 chr4 7446133 7446452 -176842210 - AluJb SINE Alu 0 312 1 1385 239 75 66 chr4 7446452 7446636 -176842026 - HAL1 LINE L1 -478 2029 1848 872 193 34 6 chr4 7446637 7446813 -176841849 + MER5A DNA MER1_type 6 186 -3 2168 229 117 41 chr4 7446819 7447080 -176841582 - HAL1 LINE L1 -696 1811 1571 2333 90 0 0 chr4 7447080 7447381 -176841281 - AluSg SINE Alu -9 301 1 2168 229 117 41 chr4 7447381 7447397 -176841265 - HAL1 LINE L1 -936 1571 1558 4150 159 44 24 chr4 7447397 7448164 -176840498 - LTR39 LTR ERV1 0 783 1 2168 229 117 41 chr4 7448164 7448784 -176839878 - HAL1 LINE L1 -949 1558 845 962 288 142 12 chr4 7448930 7449354 -176839308 + L2 LINE L2 2829 3307 -6 3280 224 11 3 chr4 7449462 7450109 -176838553 + MER82 DNA MER2_type 2 653 0 1275 259 63 46 chr4 7450835 7451360 -176837302 - L1ME2 LINE L1 -11 6153 5620 362 322 22 44 chr4 7451613 7451793 -176836869 - MIR SINE MIR -57 205 30 2124 177 46 37 chr4 7452517 7452924 -176835738 + L1MB8 LINE L1 5655 6070 -108 2243 125 3 0 chr4 7452924 7453221 -176835441 + AluSx SINE Alu 1 298 -14 2124 177 46 37 chr4 7453221 7453332 -176835330 + L1MB8 LINE L1 6070 6178 0 521 268 92 44 chr4 7453361 7453589 -176835073 + MIR SINE MIR 14 252 -10 2332 105 0 3 chr4 7454522 7454827 -176833835 - AluSg SINE Alu -6 304 1 594 206 58 13 chr4 7455033 7455188 -176833474 + MER45A DNA AcHobo 1 162 -16 200 171 143 71 chr4 7455355 7455425 -176833237 + L3b LINE CR1 1489 1563 -20 * 257 269 25 84 chr4 7455404 7455523 -176833139 + MIR SINE MIR 104 215 -47 533 284 20 0 chr4 7455829 7455977 -176832685 + MIR SINE MIR 2 152 -110 6619 72 25 0 chr4 7456065 7457245 -176831417 - L1PA10 LINE L1 0 6168 4960 10417 28 0 0 chr4 7457911 7459910 -176828752 - L1PA2 LINE L1 0 6155 4157 203 260 0 20 chr4 7459985 7460035 -176828627 - MIR SINE MIR -68 140 92 669 235 0 0 chr4 7460304 7460483 -176828179 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 512 277 84 25 chr4 7461075 7461277 -176827385 - MIR SINE MIR -12 250 37 584 330 85 0 chr4 7461383 7461607 -176827055 + MIR SINE MIR 12 254 -8 356 225 22 0 chr4 7461645 7461734 -176826928 - MER103 DNA DNA -73 93 3 180 350 41 0 chr4 7462082 7462179 -176826483 - L2 LINE L2 -304 2968 2868 311 213 13 0 chr4 7463061 7463136 -176825526 - MIR SINE MIR -64 144 69 188 286 18 0 chr4 7463279 7463335 -176825327 - MIR SINE MIR -13 249 193 532 196 65 36 chr4 7463426 7463564 -176825098 - MIR SINE MIR -86 176 35 223 182 45 0 chr4 7463967 7464011 -176824651 + MIR SINE MIR 108 153 -109 1859 169 7 3 chr4 7464069 7464370 -176824292 + AluJb SINE Alu 1 302 -10 470 233 169 29 chr4 7465133 7465305 -176823357 - MIR SINE MIR -14 248 53 1730 189 14 0 chr4 7465699 7465826 -176822836 + AluJo SINE Alu 1 125 -187 189 0 0 0 chr4 7465826 7465847 -176822815 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1730 189 14 0 chr4 7465847 7466016 -176822646 + AluJo SINE Alu 125 301 -11 181 266 266 64 chr4 7466435 7466544 -176822118 - L2 LINE L2 -40 3232 3102 387 253 32 11 chr4 7466674 7466769 -176821893 + MIR SINE MIR 24 120 -88 473 190 15 0 chr4 7466985 7467082 -176821580 - MIR SINE MIR -65 143 45 583 268 122 58 chr4 7467480 7467622 -176821040 + L1MD2 LINE L1 5989 6121 -238 255 61 0 0 chr4 7467622 7467655 -176821007 + (CA)n Simple_repeat Simple_repeat 2 34 0 583 268 122 58 chr4 7467655 7467796 -176820866 + L1MD2 LINE L1 6121 6298 -61 15408 120 24 29 chr4 7467796 7469971 -176818691 + Tigger1 DNA MER2_type 3 2166 -252 1766 110 0 4 chr4 7469971 7470207 -176818455 - AluSc SINE Alu -74 235 1 15408 120 24 29 chr4 7470207 7470459 -176818203 + Tigger1 DNA MER2_type 2166 2418 0 583 268 122 58 chr4 7470459 7470503 -176818159 + L1MD2 LINE L1 6298 6338 -21 391 269 52 72 chr4 7470708 7470901 -176817761 + MIR SINE MIR 40 228 -34 605 187 13 47 chr4 7470955 7471105 -176817557 + MER58B DNA MER1_type 197 341 0 834 168 0 0 chr4 7471125 7471256 -176817406 + FLAM_C SINE Alu 1 131 -2 2666 200 26 17 chr4 7471308 7471529 -176817133 + L1MC/D LINE L1 4839 5057 -1302 2453 106 0 3 chr4 7471529 7471841 -176816821 + AluSx SINE Alu 2 312 0 2666 200 26 17 chr4 7471841 7472565 -176816097 + L1MC/D LINE L1 5057 5788 -571 238 170 85 0 chr4 7472767 7472814 -176815848 + L2 LINE L2 3263 3313 0 259 288 7 7 chr4 7472922 7473007 -176815655 + GA-rich Low_complexity Low_complexity 1 85 0 223 254 16 16 chr4 7473535 7473598 -176815064 + MIR SINE MIR 20 82 -180 180 228 0 0 chr4 7473728 7473785 -176814877 + (CAT)n Simple_repeat Simple_repeat 3 59 0 318 330 9 0 chr4 7473797 7473906 -176814756 + (CAT)n Simple_repeat Simple_repeat 2 111 0 404 264 6 0 chr4 7473919 7474093 -176814569 + (CAT)n Simple_repeat Simple_repeat 1 175 0 1273 201 95 77 chr4 7474116 7474589 -176814073 - MER66A LTR ERV1 0 478 97 344 277 5 0 chr4 7474658 7474870 -176813792 + (CAT)n Simple_repeat Simple_repeat 1 213 0 426 311 37 0 chr4 7475088 7475223 -176813439 - MIR SINE MIR -37 225 86 200 259 19 0 chr4 7475225 7475279 -176813383 + (TAA)n Simple_repeat Simple_repeat 2 56 0 219 292 0 45 chr4 7475290 7475379 -176813283 + MIR SINE MIR 16 100 -108 358 328 56 0 chr4 7475521 7475646 -176813016 + MIR SINE MIR 57 188 -74 313 282 76 112 chr4 7477110 7477493 -176811169 - L2 LINE L2 -2 3270 2902 1089 140 0 0 chr4 7479797 7480155 -176808507 + (TCCA)n Simple_repeat Simple_repeat 1 358 0 616 211 21 84 chr4 7480199 7480389 -176808273 - MER5B DNA MER1_type 0 178 1 404 324 21 14 chr4 7480430 7480575 -176808087 - MER5B DNA MER1_type -32 146 1 1224 85 5 70 chr4 7480578 7480777 -176807885 + MER30B DNA MER1_type 1 186 -4 394 311 13 12 chr4 7480779 7480907 -176807755 + MIR SINE MIR 34 156 -64 317 222 37 0 chr4 7481217 7481298 -176807364 + MER5A DNA MER1_type 4 87 -102 211 286 0 0 chr4 7481766 7481815 -176806847 - L2 LINE L2 -6 3307 3259 908 291 23 16 chr4 7481821 7482079 -176806583 + MIR SINE MIR 1 260 -2 287 366 10 0 chr4 7482443 7482544 -176806118 - MIR SINE MIR -3 259 158 227 372 27 16 chr4 7485389 7485572 -176803090 + MIR SINE MIR 70 254 -8 703 228 54 11 chr4 7485972 7486156 -176802506 + MIR SINE MIR 1 192 -70 210 347 10 0 chr4 7486707 7486805 -176801857 + (TGAA)n Simple_repeat Simple_repeat 1 99 0 446 257 35 20 chr4 7488340 7488492 -176800170 + MIR SINE MIR 32 185 -62 1463 190 15 90 chr4 7488781 7489171 -176799491 - MLT1B LTR MaLR -2 388 28 446 147 186 39 chr4 7489138 7489267 -176799395 - MLT1B LTR MaLR -242 148 1 * 1251 220 66 42 chr4 7489269 7489694 -176798968 + MLT1C LTR MaLR 17 463 -4 237 364 30 0 chr4 7489717 7489816 -176798846 - MIR SINE MIR -35 227 126 255 276 35 11 chr4 7489933 7490020 -176798642 + MIR SINE MIR 31 119 -89 219 350 0 40 chr4 7490028 7490128 -176798534 - MIR SINE MIR -159 103 8 3279 150 53 26 chr4 7490134 7490720 -176797942 - LTR43 LTR ERV1 0 602 1 307 214 29 14 chr4 7490734 7490804 -176797858 + MIR SINE MIR 8 78 -184 188 219 0 0 chr4 7490923 7490955 -176797707 - MER5A DNA MER1_type -1 188 157 235 265 92 0 chr4 7490966 7491039 -176797623 - MIR SINE MIR -76 132 51 1586 132 156 93 chr4 7491081 7491459 -176797203 - MER4A LTR ERV1 0 664 263 485 104 42 21 chr4 7491461 7491557 -176797105 - MER4A LTR ERV1 -566 98 1 2359 98 3 0 chr4 7491885 7492192 -176796470 - AluSq SINE Alu -5 308 1 281 312 127 26 chr4 7492390 7492579 -176796083 + MIR SINE MIR 43 250 -12 1862 189 78 71 chr4 7492680 7493246 -176795416 - LTR59 LTR ERV1 -11 586 17 518 198 35 9 chr4 7493256 7493372 -176795290 - L1PA3 LINE L1 -10 6145 6027 376 283 147 22 chr4 7493670 7493854 -176794808 + L1MC4 LINE L1 7525 7731 -311 1854 119 101 0 chr4 7493887 7494164 -176794498 - AluSx SINE Alu -7 305 1 2096 191 87 17 chr4 7494209 7494691 -176793971 - MER34 LTR ERV1 -15 527 12 241 258 155 7 chr4 7494816 7494971 -176793691 + L1MC5 LINE L1 7703 7880 -81 608 299 83 24 chr4 7495112 7495523 -176793139 + L1ME4a LINE L1 5563 5997 -124 3528 73 54 0 chr4 7495551 7496029 -176792633 + L1PA8 LINE L1 5668 6171 -1 344 246 35 18 chr4 7496168 7496282 -176792380 - L1ME1 LINE L1 -5 6161 6046 1248 180 3 52 chr4 7496307 7496596 -176792066 - L1MC3 LINE L1 -2 7783 7509 191 224 24 118 chr4 7497008 7497093 -176791569 + L2 LINE L2 2697 2773 -541 596 219 12 21 chr4 7497381 7497801 -176790861 + (TCCA)n Simple_repeat Simple_repeat 1 416 0 345 378 31 0 chr4 7497803 7497930 -176790732 - L2 LINE L2 -4 3268 3138 866 223 175 41 chr4 7498801 7499195 -176789467 - MLT1C LTR MaLR 0 467 21 2339 113 0 0 chr4 7499394 7499696 -176788966 - AluSx SINE Alu -10 302 1 579 220 124 6 chr4 7499760 7499937 -176788725 + MER58C DNA MER1_type 1 198 -17 458 320 51 6 chr4 7500280 7500455 -176788207 - MIR SINE MIR 0 262 80 1407 140 62 135 chr4 7501089 7501460 -176787202 + MER2 DNA MER2_type 1 344 0 471 331 12 17 chr4 7501628 7501800 -176786862 + MIR SINE MIR 92 262 0 208 308 84 35 chr4 7501852 7501995 -176786667 - MIR3 SINE MIR -57 151 2 1978 117 0 0 chr4 7502490 7502773 -176785889 + AluSx SINE Alu 25 307 -5 349 303 80 17 chr4 7502777 7502952 -176785710 + Charlie8 DNA MER1_type 78 263 -2154 212 246 18 18 chr4 7503034 7503091 -176785571 + MIR3 SINE MIR 104 160 -48 227 289 78 39 chr4 7504254 7504382 -176784280 + MIR SINE MIR 13 145 -117 2195 205 152 5 chr4 7504383 7504950 -176783712 - MLT1E1 LTR MaLR -1 653 4 366 252 30 15 chr4 7505424 7505555 -176783107 + (TG)n Simple_repeat Simple_repeat 2 134 0 285 289 35 35 chr4 7505585 7505727 -176782935 + (CATG)n Simple_repeat Simple_repeat 1 142 0 642 326 52 17 chr4 7506169 7506402 -176782260 + MIR SINE MIR 11 251 -11 817 169 84 0 chr4 7506423 7506565 -176782097 + AluJb SINE Alu 137 290 -22 233 263 10 30 chr4 7506565 7506664 -176781998 + (TATG)n Simple_repeat Simple_repeat 4 100 0 490 242 253 10 chr4 7508368 7508566 -176780096 + MIR SINE MIR 17 262 0 1420 182 162 17 chr4 7509276 7509622 -176779040 - MSTD LTR MaLR 0 396 1 2022 150 80 102 chr4 7510690 7511169 -176777493 - MLT2B2 LTR ERVL 0 515 48 2207 87 3 13 chr4 7511169 7511480 -176777182 + AluSg1 SINE Alu 1 308 -1 2022 150 80 102 chr4 7511480 7511527 -176777135 - MLT2B2 LTR ERVL -467 48 1 246 282 71 24 chr4 7512073 7512158 -176776504 - L2 LINE L2 0 3272 3184 348 302 16 16 chr4 7512181 7512310 -176776352 + MER117 DNA MER1_type 27 155 -42 348 278 72 0 chr4 7512352 7512449 -176776213 - MIR SINE MIR -8 254 151 375 23 0 0 chr4 7512454 7512498 -176776164 + (TG)n Simple_repeat Simple_repeat 1 44 0 485 213 148 0 chr4 7513265 7513373 -176775289 + L2 LINE L2 3190 3313 0 279 355 35 18 chr4 7513591 7513760 -176774902 + L2 LINE L2 2898 3069 -203 985 242 7 28 chr4 7513841 7514094 -176774568 - MIR SINE MIR 0 262 12 1838 162 0 0 chr4 7514163 7514472 -176774190 + AluSx SINE Alu 1 309 -3 976 159 0 16 chr4 7514492 7514674 -176773988 + AluSg/x SINE Alu 129 307 -5 1719 236 77 19 chr4 7515292 7515771 -176772891 - LTR53 LTR ERVL -12 507 1 709 83 21 0 chr4 7515941 7516037 -176772625 - AluJo SINE Alu -176 136 39 321 269 0 0 chr4 7516346 7516413 -176772249 + MIR SINE MIR 86 152 -110 2152 181 55 22 chr4 7518155 7518607 -176770055 - MLT1C LTR MaLR 0 467 1 190 361 46 0 chr4 7519380 7519510 -176769152 + L2 LINE L2 2801 2936 -378 240 276 168 22 chr4 7519510 7519695 -176768967 + LTR16A1 LTR ERVL 1 212 -245 826 208 34 5 chr4 7519837 7520044 -176768618 + LTR16A1 LTR ERVL 245 457 0 419 261 125 33 chr4 7520091 7520275 -176768387 + L2 LINE L2 3006 3206 -107 288 204 159 21 chr4 7520438 7520583 -176768079 - MIR SINE MIR -57 205 38 21 36 0 0 chr4 7520771 7520799 -176767863 + AT_rich Low_complexity Low_complexity 1 28 0 540 201 37 0 chr4 7521618 7521737 -176766925 + MER63 DNA MER1_type 679 1653 -35 2126 115 3 6 chr4 7522794 7523107 -176765555 - AluSx SINE Alu 0 312 1 181 167 0 48 chr4 7523255 7523297 -176765365 + L2 LINE L2 3014 3053 -219 370 312 64 57 chr4 7523366 7523664 -176764998 - L2 LINE L2 -1 3312 3013 2507 62 0 0 chr4 7524853 7525162 -176763500 - AluY SINE Alu -2 309 1 207 335 81 25 chr4 7525169 7525330 -176763332 + L2 LINE L2 2549 2718 -596 3730 136 62 0 chr4 7525447 7526045 -176762617 - LTR24C LTR ERV1 0 635 1 198 103 0 0 chr4 7526991 7527020 -176761642 + (A)n Simple_repeat Simple_repeat 1 29 0 286 285 8 39 chr4 7527501 7527631 -176761031 + (TATATG)n Simple_repeat Simple_repeat 1 126 0 406 279 66 0 chr4 7527651 7527773 -176760889 - MIR SINE MIR -48 214 85 376 265 15 45 chr4 7527835 7527967 -176760695 - MIR SINE MIR -74 188 61 185 270 0 81 chr4 7528103 7528177 -176760485 + MIR SINE MIR 115 182 -80 2301 151 27 117 chr4 7528530 7528975 -176759687 - MLT2B2 LTR ERVL -2 513 128 1858 135 10 7 chr4 7528975 7529271 -176759391 + AluSx SINE Alu 6 302 -10 2301 151 27 117 chr4 7529271 7529389 -176759273 - MLT2B2 LTR ERVL -387 128 1 228 245 19 47 chr4 7529825 7529931 -176758731 + CT-rich Low_complexity Low_complexity 4 106 0 661 223 7 7 chr4 7530832 7530971 -176757691 + MIR SINE MIR 35 173 -89 1057 269 56 6 chr4 7531063 7531405 -176757257 - L1MEc LINE L1 -5453 943 585 308 205 103 13 chr4 7531419 7531497 -176757165 - L1M4 LINE L1 -3317 2829 2745 352 95 16 16 chr4 7532231 7532294 -176756368 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 311 133 22 0 chr4 7532294 7532339 -176756323 - Tigger2 DNA MER2_type -14 2704 2659 308 299 35 75 chr4 7532342 7532516 -176756146 + L1MEc LINE L1 266 432 -5964 2266 109 48 24 chr4 7532534 7532909 -176755753 - Tigger2 DNA MER2_type -54 2664 2281 2375 144 31 2 chr4 7532915 7533331 -176755331 - L1MA4A LINE L1 -6 6297 5870 399 183 0 14 chr4 7533341 7533412 -176755250 + MER8 DNA MER2_type 170 239 0 450 316 58 0 chr4 7533453 7533627 -176755035 - L1MC4a LINE L1 -1947 5861 5678 497 275 6 2 chr4 7533653 7533794 -176754868 - MIR SINE MIR -43 165 22 225 316 51 0 chr4 7534487 7534585 -176754077 + L2 LINE L2 2737 2839 -475 737 232 29 77 chr4 7534696 7535045 -176753617 - HAL1 LINE L1 0 2507 2176 1944 156 97 33 chr4 7535195 7535587 -176753075 - LTR59 LTR ERV1 -172 425 9 43506 35 23 1 chr4 7535589 7541602 -176747060 - L1PA3 LINE L1 -10 6145 1 303 28 0 0 chr4 7541667 7541703 -176746959 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 769 282 45 48 chr4 7541725 7542080 -176746582 - L2 LINE L2 -383 2931 2578 221 316 74 0 chr4 7542147 7542242 -176746420 + MIR SINE MIR 150 251 -11 2123 115 3 0 chr4 7542248 7542544 -176746118 + AluSx SINE Alu 1 297 -15 2616 113 6 6 chr4 7542736 7543100 -176745562 - THE1B LTR MaLR 0 364 1 1666 259 58 25 chr4 7543591 7544121 -176744541 - MER77 LTR ERV1 -4 601 54 2020 118 3 7 chr4 7544401 7544705 -176743957 + AluSx SINE Alu 1 303 -9 2626 170 41 12 chr4 7544755 7545244 -176743418 - MLT1D LTR MaLR -1 504 2 203 0 0 36 chr4 7545550 7545578 -176743084 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 2097 75 18 0 chr4 7545585 7545865 -176742797 - AluY SINE Alu -26 285 1 238 314 17 25 chr4 7546000 7546118 -176742544 + MIR3 SINE MIR 4 120 -88 525 285 90 70 chr4 7546501 7546813 -176741849 + L2 LINE L2 2955 3272 0 498 289 119 50 chr4 7546908 7547267 -176741395 - MLT1H LTR MaLR -16 533 40 221 154 0 26 chr4 7547861 7547900 -176740762 + CT-rich Low_complexity Low_complexity 2 39 0 381 270 108 14 chr4 7548056 7548204 -176740458 - MIR SINE MIR -1 261 100 335 299 92 49 chr4 7548906 7549090 -176739572 - L1ME3A LINE L1 -8 6145 5954 1290 217 72 6 chr4 7549165 7549497 -176739165 - L1ME3A LINE L1 -221 5932 5579 497 212 20 34 chr4 7549513 7549659 -176739003 - L1ME3A LINE L1 -1545 4584 4441 * 641 217 41 52 chr4 7549647 7550008 -176738654 - L1ME3A LINE L1 -2088 4041 2315 237 65 0 0 chr4 7550042 7550073 -176738589 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 243 77 0 231 chr4 7550132 7550210 -176738452 + MIR SINE MIR 79 138 -124 894 273 39 84 chr4 7550210 7550927 -176737735 - L1ME3A LINE L1 -4905 1214 530 12982 24 0 1 chr4 7551508 7553860 -176734802 - L1PA3 LINE L1 -2 6153 3803 350 47 0 4 chr4 7553860 7553917 -176734745 + L1PA3 LINE L1 3753 3808 -2338 405 290 147 39 chr4 7554020 7554251 -176734411 + MIR SINE MIR 5 260 -2 195 268 37 49 chr4 7554225 7554307 -176734355 - L2 LINE L2 -4 3268 3188 * 1888 189 40 5 chr4 7554405 7554785 -176733877 - MER68 LTR ERV1 -4 558 166 1758 166 35 10 chr4 7555223 7555513 -176733149 + AluJb SINE Alu 1 297 -15 2195 126 13 3 chr4 7555734 7556043 -176732619 - AluSx SINE Alu 0 312 1 1115 31 15 0 chr4 7556058 7556188 -176732474 - AluY SINE Alu -6 305 174 279 0 0 0 chr4 7556205 7556236 -176732426 + (A)n Simple_repeat Simple_repeat 1 31 0 269 214 0 11 chr4 7556745 7556834 -176731828 + (TG)n Simple_repeat Simple_repeat 1 88 0 264 279 0 0 chr4 7556892 7557003 -176731659 + (TG)n Simple_repeat Simple_repeat 1 111 0 202 320 13 0 chr4 7557014 7557089 -176731573 + (TG)n Simple_repeat Simple_repeat 1 76 0 255 284 77 27 chr4 7557584 7557767 -176730895 + HAL1 LINE L1 2226 2417 -90 1689 202 152 5 chr4 7557827 7558262 -176730400 + MLT1D LTR MaLR 7 505 0 2276 99 13 7 chr4 7558273 7558575 -176730087 - AluSx SINE Alu -8 304 1 251 320 74 16 chr4 7559304 7559426 -176729236 + L2 LINE L2 3136 3264 -8 255 282 103 43 chr4 7559523 7559640 -176729022 + MER5B DNA MER1_type 54 177 -1 2594 57 3 0 chr4 7560259 7560558 -176728104 + AluY SINE Alu 1 300 -11 1840 192 93 25 chr4 7560888 7561361 -176727301 + MLT1D LTR MaLR 1 505 0 282 279 15 0 chr4 7561408 7561476 -176727186 + MIR SINE MIR 7 75 -187 740 254 121 4 chr4 7561560 7561800 -176726862 + L2 LINE L2 1933 2200 -1114 1149 230 7 35 chr4 7561807 7562090 -176726572 - MLT1E LTR MaLR 0 593 319 946 263 207 0 chr4 7562090 7562482 -176726180 + L2 LINE L2 2235 2707 -607 956 140 92 0 chr4 7562502 7562666 -176725996 - MER30 DNA MER1_type -51 179 1 392 270 162 7 chr4 7562678 7562826 -176725836 + MER104 DNA Tc2 1 171 -9 470 262 92 19 chr4 7562830 7563141 -176725521 + L2 LINE L2 2704 3102 -211 2167 139 0 0 chr4 7563566 7563868 -176724794 + AluSx SINE Alu 1 302 -10 248 242 21 84 chr4 7564251 7564346 -176724316 + MIR SINE MIR 8 96 -166 357 233 69 80 chr4 7564405 7564478 -176724184 + L1MEd LINE L1 859 931 -5188 2186 99 13 20 chr4 7564478 7564780 -176723882 + AluSx SINE Alu 1 300 -12 357 233 69 80 chr4 7564780 7564968 -176723694 + L1MEd LINE L1 931 1117 -5002 756 236 51 25 chr4 7565294 7565531 -176723131 + MER90 LTR ERV1 1 243 -332 277 247 74 0 chr4 7565593 7565674 -176722988 + MER90 LTR ERV1 528 614 0 337 283 91 11 chr4 7565912 7566099 -176722563 + L1MEd LINE L1 2196 2397 -3732 255 280 53 33 chr4 7566114 7566264 -176722398 + L1MEd LINE L1 2452 2604 -3525 630 306 73 48 chr4 7566308 7567208 -176721454 + L1M4 LINE L1 4202 5132 -1014 336 221 52 0 chr4 7567499 7567576 -176721086 + MIR SINE MIR 95 175 -87 502 162 110 7 chr4 7567590 7567726 -176720936 - L1MB7 LINE L1 0 6184 6035 375 253 0 57 chr4 7568140 7568253 -176720409 - L1MC4 LINE L1 -1334 6988 1977 188 210 12 0 chr4 7568255 7568336 -176720326 + (TA)n Simple_repeat Simple_repeat 1 82 0 2196 128 0 13 chr4 7568336 7568640 -176720022 - AluSx SINE Alu -12 300 1 3091 117 42 16 chr4 7568673 7569179 -176719483 - L1PA16 LINE L1 -2 6164 5646 2170 131 3 3 chr4 7569299 7569605 -176719057 + AluSx SINE Alu 1 306 -6 226 269 29 39 chr4 7569644 7569748 -176718914 - L1PBa LINE L1 -3902 2961 2859 531 307 84 14 chr4 7569763 7570274 -176718388 - L1MC4 LINE L1 -4913 1503 1012 1613 195 48 11 chr4 7571280 7571655 -176717007 - MLT1B LTR MaLR -1 389 1 303 299 0 0 chr4 7571839 7571916 -176716746 - MIR SINE MIR -178 84 8 327 268 164 18 chr4 7572113 7572306 -176716356 + MIR SINE MIR 33 250 -12 218 343 20 10 chr4 7572779 7572878 -176715784 + MIR SINE MIR 45 144 -118 261 250 47 0 chr4 7573009 7573073 -176715589 - MIR SINE MIR -109 99 33 2359 109 3 0 chr4 7573989 7574300 -176714362 + AluSx SINE Alu 1 312 0 227 299 0 15 chr4 7575199 7575266 -176713396 - MLT1J LTR MaLR -202 309 244 2200 112 27 3 chr4 7575322 7575618 -176713044 + AluSx SINE Alu 1 303 -9 235 252 216 18 chr4 7575626 7575737 -176712925 - MLT1L LTR MaLR -355 260 128 3467 121 17 6 chr4 7576306 7576827 -176711835 - MER1A DNA MER1_type 0 527 1 196 277 31 0 chr4 7577399 7577464 -176711198 + MIR3 SINE MIR 88 154 -54 342 190 0 0 chr4 7577800 7577858 -176710804 + MER94 DNA DNA 54 111 -23 2262 109 10 0 chr4 7577869 7578163 -176710499 - AluSx SINE Alu -15 297 1 369 286 27 0 chr4 7579064 7579176 -176709486 - LTR16C LTR ERVL -2 489 375 287 281 86 29 chr4 7579214 7579353 -176709309 - MLT1E2 LTR MaLR -37 589 443 308 291 34 56 chr4 7579450 7579629 -176709033 - MER5A DNA MER1_type -5 184 10 4580 137 27 23 chr4 7579817 7580010 -176708652 - L1PB4 LINE L1 0 6156 5965 2397 82 7 7 chr4 7580010 7580304 -176708358 - AluSx SINE Alu -18 294 1 4580 137 27 23 chr4 7580304 7580933 -176707729 - L1PB4 LINE L1 -191 5965 5331 302 284 90 26 chr4 7581011 7581166 -176707496 + L2 LINE L2 3149 3313 0 229 191 0 0 chr4 7581166 7581213 -176707449 + GA-rich Low_complexity Low_complexity 2 48 0 392 143 12 0 chr4 7582038 7582122 -176706540 + CT-rich Low_complexity Low_complexity 2 86 0 358 250 176 0 chr4 7582901 7583049 -176705613 - MIR SINE MIR -13 249 76 180 246 146 18 chr4 7583098 7583208 -176705454 + MIR SINE MIR 23 146 -62 491 279 19 13 chr4 7583579 7583737 -176704925 + MIR3 SINE MIR 44 202 -6 185 206 0 0 chr4 7583775 7583809 -176704853 + MIR SINE MIR 116 149 -113 398 286 8 15 chr4 7583984 7584117 -176704545 + MIR3 SINE MIR 12 143 -65 618 264 56 0 chr4 7586592 7586770 -176701892 - MER20 DNA MER1_type -1 218 31 1893 92 7 33 chr4 7587157 7587428 -176701234 - AluSg SINE Alu -46 264 1 690 258 154 27 chr4 7588897 7589196 -176699466 - MER69 DNA AcHobo -2184 342 6 991 208 59 24 chr4 7589196 7589451 -176699211 - LTR48B LTR ERV1 0 644 381 351 314 33 8 chr4 7589945 7590066 -176698596 - MER5A DNA MER1_type -3 186 63 593 290 67 37 chr4 7590191 7590491 -176698171 + LTR16B LTR ERVL 1 309 -155 411 163 8 39 chr4 7590492 7590621 -176698041 + CT-rich Low_complexity Low_complexity 1 125 0 399 234 47 58 chr4 7590624 7590795 -176697867 + LTR16B LTR ERVL 292 460 -4 1998 111 71 31 chr4 7591910 7592260 -176696402 + THE1B LTR MaLR 1 364 0 2462 134 7 34 chr4 7592379 7592789 -176695873 + MSTC LTR MaLR 30 428 0 604 274 50 5 chr4 7592925 7593126 -176695536 + L1M4 LINE L1 4848 5057 -1089 397 171 9 117 chr4 7593130 7593241 -176695421 + MLT1D LTR MaLR 1 99 -406 658 190 23 81 chr4 7593925 7594099 -176694563 + MIR SINE MIR 8 171 -91 423 226 0 0 chr4 7594165 7594267 -176694395 + (CACCAT)n Simple_repeat Simple_repeat 4 105 0 506 324 67 17 chr4 7596054 7596292 -176692370 - MIR SINE MIR -10 252 3 225 315 0 0 chr4 7596311 7596365 -176692297 + (TG)n Simple_repeat Simple_repeat 1 54 0 2049 160 102 19 chr4 7596602 7597014 -176691648 + MER83 LTR ERV1 3 448 0 392 301 77 32 chr4 7597017 7597173 -176691489 + MIR3 SINE MIR 42 204 -4 2114 151 83 2 chr4 7597380 7597777 -176690885 + MSTB1 LTR MaLR 4 432 0 220 200 0 0 chr4 7598405 7598445 -176690217 + CT-rich Low_complexity Low_complexity 2 41 0 583 275 63 5 chr4 7598470 7598659 -176690003 + MER58C DNA MER1_type 1 200 -15 210 246 105 44 chr4 7598894 7599008 -176689654 + MIR SINE MIR 102 222 -40 338 231 13 13 chr4 7599698 7599854 -176688808 + (CA)n Simple_repeat Simple_repeat 1 156 0 231 259 0 0 chr4 7599985 7600070 -176688592 + (CA)n Simple_repeat Simple_repeat 2 86 0 306 308 45 8 chr4 7600191 7600324 -176688338 - LTR16C LTR ERVL -2 489 352 435 244 6 11 chr4 7601500 7601676 -176686986 + (CA)n Simple_repeat Simple_repeat 1 175 0 188 167 0 48 chr4 7602272 7602314 -176686348 - MIR SINE MIR -63 145 106 335 251 78 18 chr4 7602659 7602826 -176685836 - L1ME4a LINE L1 -240 5881 5705 227 340 19 0 chr4 7602961 7603064 -176685598 - L1ME4a LINE L1 -473 5648 5544 1188 131 0 0 chr4 7603164 7603332 -176685330 + AluSg/x SINE Alu 137 304 -8 361 332 123 25 chr4 7603570 7603805 -176684857 - L1MC4a LINE L1 -1903 5905 5648 359 283 117 55 chr4 7603817 7604142 -176684520 - L1MC4a LINE L1 -2187 5621 5277 462 305 100 59 chr4 7604166 7604710 -176683952 - L1MC4a LINE L1 -893 5253 4673 1791 153 50 10 chr4 7604868 7605168 -176683494 - AluJo SINE Alu 0 312 1 2142 162 45 8 chr4 7605855 7606256 -176682406 + L1MB7 LINE L1 5752 6167 -17 1464 229 67 27 chr4 7606719 7607081 -176681581 + MLT1C LTR MaLR 1 386 -81 2858 13 0 0 chr4 7607081 7607387 -176681275 - AluYa5 SINE Alu -5 306 1 1464 229 67 27 chr4 7607387 7607473 -176681189 + MLT1C LTR MaLR 386 467 0 335 269 92 17 chr4 7607478 7607597 -176681065 + MIR SINE MIR 108 235 -27 2434 57 3 10 chr4 7607684 7607980 -176680682 + AluY SINE Alu 1 294 -17 2050 195 20 15 chr4 7608143 7608537 -176680125 + MSTD LTR MaLR 1 396 0 254 125 21 0 chr4 7609594 7609642 -176679020 + GA-rich Low_complexity Low_complexity 2 50 0 2015 117 25 18 chr4 7611269 7611623 -176677039 + AluSq SINE Alu 1 356 0 701 283 211 24 chr4 7611750 7612635 -176676027 - L2 LINE L2 0 3313 2269 284 339 9 9 chr4 7612697 7612812 -176675850 + L2 LINE L2 2947 3061 -211 952 229 138 14 chr4 7613936 7614285 -176674377 - LTR16C LTR ERVL -2 489 98 763 225 35 0 chr4 7614439 7614612 -176674050 + MER3 DNA MER1_type 19 197 -12 257 214 0 18 chr4 7614668 7614724 -176673938 + MIR SINE MIR 96 150 -112 726 228 85 5 chr4 7614805 7615016 -176673646 + MER33 DNA MER1_type 1 228 -96 290 276 69 17 chr4 7615552 7615668 -176672994 - MER5C DNA MER1_type -202 122 1 2007 132 23 23 chr4 7615820 7615939 -176672723 + AluSx SINE Alu 1 119 -193 2022 72 4 0 chr4 7615939 7616188 -176672474 + AluY SINE Alu 61 310 -1 2007 132 23 23 chr4 7616188 7616378 -176672284 + AluSx SINE Alu 118 310 -2 537 161 0 0 chr4 7616492 7616622 -176672040 + (CA)n Simple_repeat Simple_repeat 1 130 0 290 239 92 46 chr4 7617111 7617241 -176671421 - MIR3 SINE MIR -10 198 63 469 318 44 12 chr4 7617506 7617708 -176670954 + MIR SINE MIR 44 250 -12 28 29 0 0 chr4 7617870 7617905 -176670757 + AT_rich Low_complexity Low_complexity 1 35 0 294 280 30 8 chr4 7618470 7618602 -176670060 + HAL1 LINE L1 102 236 -2271 951 301 31 29 chr4 7618676 7619061 -176669601 + L1ME3A LINE L1 5564 5949 -221 1171 257 111 36 chr4 7619063 7619615 -176669047 + MLT1E LTR MaLR 1 593 0 2105 137 0 10 chr4 7619921 7620221 -176668441 + AluSx SINE Alu 1 297 -15 251 314 66 0 chr4 7620341 7620462 -176668200 + MLT1E-int LTR MaLR 725 853 -518 1948 116 6 75 chr4 7620504 7620822 -176667840 - AluSx SINE Alu -16 296 1 734 297 81 48 chr4 7620929 7621326 -176667336 + MLT1E-int LTR MaLR 961 1370 -1 426 292 0 8 chr4 7621327 7621447 -176667215 + MLT1E LTR MaLR 3 121 -472 519 294 119 0 chr4 7621618 7621795 -176666867 + MIR SINE MIR 31 228 -34 225 301 204 28 chr4 7621858 7622055 -176666607 + L2 LINE L2 2413 2574 -740 1445 128 26 148 chr4 7622055 7622399 -176666263 - AluYb8 SINE Alu -5 303 2 225 301 204 28 chr4 7622399 7622490 -176666172 + L2 LINE L2 2574 2752 -562 285 258 197 56 chr4 7622497 7622531 -176666131 - MIR SINE MIR -28 234 206 1271 184 76 65 chr4 7622531 7622901 -176665761 - MLT1A2 LTR MaLR 0 374 1 285 258 197 56 chr4 7622901 7623064 -176665598 - MIR SINE MIR -56 206 9 272 273 220 8 chr4 7624492 7624624 -176664038 - MIR SINE MIR -34 228 69 283 366 99 12 chr4 7624931 7625092 -176663570 - MER5B DNA MER1_type -1 177 3 200 288 51 34 chr4 7625130 7625248 -176663414 - MIR SINE MIR -72 136 17 975 154 7 0 chr4 7625624 7625929 -176662733 + GA-rich Low_complexity Low_complexity 1 307 0 350 261 126 18 chr4 7626124 7626235 -176662427 + MIR3 SINE MIR 39 161 -47 240 283 0 0 chr4 7626373 7626426 -176662236 + polypyrimidine Low_complexity Low_complexity 3 55 0 407 211 13 0 chr4 7626431 7626507 -176662155 - L2 LINE L2 0 3272 3196 1993 127 32 0 chr4 7627042 7627326 -176661336 + AluSx SINE Alu 5 297 -15 2364 192 24 10 chr4 7627338 7627837 -176660825 + L1MA8 LINE L1 5485 5990 -301 1454 147 65 47 chr4 7628163 7628442 -176660220 - AluJb SINE Alu -18 294 11 844 283 110 13 chr4 7628498 7629014 -176659648 + L1ME4a LINE L1 5313 5891 -230 433 315 108 50 chr4 7629439 7629801 -176658861 - L2 LINE L2 -63 3209 2827 392 235 9 0 chr4 7630273 7630388 -176658274 + (CACCAT)n Simple_repeat Simple_repeat 4 119 0 62 0 0 0 chr4 7631959 7632021 -176656641 + AT_rich Low_complexity Low_complexity 1 62 0 2158 60 4 19 chr4 7632028 7632296 -176656366 + AluY SINE Alu 1 264 -47 426 274 81 0 chr4 7632313 7632437 -176656225 + AluJb SINE Alu 164 297 -15 240 35 0 0 chr4 7634206 7634235 -176654427 + (TG)n Simple_repeat Simple_repeat 1 29 0 777 229 7 76 chr4 7634249 7634524 -176654138 - AluSp SINE Alu -31 282 27 215 288 34 0 chr4 7636130 7636189 -176652473 + MIR SINE MIR 129 189 -73 2436 211 60 11 chr4 7637175 7637272 -176651390 - L1 LINE L1 -2472 3674 3583 2281 107 0 0 chr4 7637272 7637561 -176651101 + AluSg SINE Alu 1 289 -21 2436 211 60 11 chr4 7637561 7638132 -176650530 - L1 LINE L1 -2563 3583 2973 5316 62 11 33 chr4 7638477 7639183 -176649479 + LTR8 LTR ERV1 1 691 0 318 305 17 17 chr4 7639263 7639381 -176649281 - MER5B DNA MER1_type -58 120 3 538 208 12 17 chr4 7640817 7640990 -176647672 + (CCA)n Simple_repeat Simple_repeat 2 173 0 * 669 189 11 11 chr4 7640947 7641127 -176647535 + (CAT)n Simple_repeat Simple_repeat 1 180 0 308 162 0 15 chr4 7641176 7641244 -176647418 + (CAT)n Simple_repeat Simple_repeat 1 67 0 740 295 59 8 chr4 7641244 7641481 -176647181 - MIR SINE MIR -1 261 13 217 410 8 22 chr4 7641502 7641636 -176647026 - L3b LINE CR1 -8 1575 1444 * 703 292 226 33 chr4 7641626 7642738 -176645924 + L2 LINE L2 1729 3053 -219 203 278 37 0 chr4 7642878 7642932 -176645730 + L2 LINE L2 3212 3267 -5 235 293 69 26 chr4 7643029 7643145 -176645517 - MIR SINE MIR -68 140 20 443 293 43 27 chr4 7643205 7643393 -176645269 - MIR SINE MIR -44 218 28 238 143 24 0 chr4 7643897 7643939 -176644723 + MLT1J2 LTR MaLR 100 142 -308 355 198 128 0 chr4 7644223 7644309 -176644353 + MIR SINE MIR 70 166 -96 30 27 0 0 chr4 7644486 7644523 -176644139 + AT_rich Low_complexity Low_complexity 1 37 0 538 282 116 33 chr4 7645000 7645241 -176643421 - L2 LINE L2 -1 3271 3011 1565 156 15 30 chr4 7646531 7646800 -176641862 - AluJo SINE Alu -13 299 35 216 97 0 0 chr4 7646821 7646852 -176641810 + (T)n Simple_repeat Simple_repeat 1 31 0 464 313 65 18 chr4 7646951 7647168 -176641494 - MIR SINE MIR -34 228 2 394 318 43 27 chr4 7648371 7648629 -176640033 - L2 LINE L2 -177 3095 2834 2289 78 3 10 chr4 7649061 7649357 -176639305 + AluSc SINE Alu 1 294 -15 519 294 119 0 chr4 7649617 7649794 -176638868 - MIR SINE MIR -34 228 31 426 292 0 8 chr4 7649965 7650085 -176638577 - MLT1E LTR MaLR -472 121 3 734 297 81 48 chr4 7650086 7650483 -176638179 - MLT1E-int LTR MaLR -1 1370 961 2018 107 6 75 chr4 7650590 7650908 -176637754 + AluSx SINE Alu 1 296 -16 251 314 66 0 chr4 7650950 7651071 -176637591 - MLT1E-int LTR MaLR -518 853 725 239 172 0 52 chr4 7651191 7651249 -176637413 - Alu SINE Alu -5 296 242 693 201 6 11 chr4 7651481 7651660 -176637002 + (CCA)n Simple_repeat Simple_repeat 1 178 0 313 189 0 45 chr4 7651655 7651766 -176636896 + (CACCAT)n Simple_repeat Simple_repeat 1 106 0 * 713 183 11 11 chr4 7651766 7651946 -176636716 + (CCA)n Simple_repeat Simple_repeat 1 180 0 432 218 6 26 chr4 7651950 7652106 -176636556 + (CACCAT)n Simple_repeat Simple_repeat 4 156 0 308 162 0 15 chr4 7652155 7652223 -176636439 + (CAT)n Simple_repeat Simple_repeat 1 67 0 740 295 59 8 chr4 7652223 7652460 -176636202 - MIR SINE MIR -1 261 13 217 410 8 22 chr4 7652481 7652615 -176636047 - L3b LINE CR1 -8 1575 1444 * 540 296 224 31 chr4 7652605 7653717 -176634945 + L2 LINE L2 1729 3053 -219 192 278 37 0 chr4 7653857 7653911 -176634751 + L2 LINE L2 3212 3267 -5 215 293 69 26 chr4 7654008 7654124 -176634538 - MIR SINE MIR -68 140 20 414 293 43 27 chr4 7654184 7654372 -176634290 - MIR SINE MIR -44 218 28 240 200 20 0 chr4 7654868 7654918 -176633744 + MLT1J2 LTR MaLR 92 142 -308 334 198 128 0 chr4 7655202 7655288 -176633374 + MIR SINE MIR 70 166 -96 30 27 0 0 chr4 7655465 7655502 -176633160 + AT_rich Low_complexity Low_complexity 1 37 0 476 282 116 33 chr4 7655979 7656220 -176632442 - L2 LINE L2 -1 3271 3011 1571 156 15 30 chr4 7657510 7657779 -176630883 - AluJo SINE Alu -13 299 35 216 97 0 0 chr4 7657800 7657831 -176630831 + (T)n Simple_repeat Simple_repeat 1 31 0 433 313 65 18 chr4 7657930 7658147 -176630515 - MIR SINE MIR -34 228 2 427 293 36 28 chr4 7659359 7659608 -176629054 - L2 LINE L2 -188 3084 2834 2375 80 3 7 chr4 7660040 7660341 -176628321 + AluSc SINE Alu 1 300 -9 1260 163 38 129 chr4 7660369 7660797 -176627865 + MLT1B LTR MaLR 2 374 0 475 269 54 81 chr4 7661517 7661740 -176626922 - L1MC5 LINE L1 -30 7931 7715 303 140 40 0 chr4 7661771 7661821 -176626841 + MER75 DNA T2_type 453 504 0 303 313 42 50 chr4 7661821 7662080 -176626582 - L1MC5 LINE L1 -253 7708 7452 189 0 0 0 chr4 7662608 7662629 -176626033 + (CA)n Simple_repeat Simple_repeat 2 22 0 432 37 0 0 chr4 7662954 7663008 -176625654 + (TA)n Simple_repeat Simple_repeat 1 54 0 2441 86 0 0 chr4 7663009 7663301 -176625361 - AluY SINE Alu -19 292 1 520 355 4 18 chr4 7663316 7663589 -176625073 - L1ME LINE L1 -301 5820 5552 1922 179 0 3 chr4 7663640 7663948 -176624714 - AluJo SINE Alu 0 312 6 217 214 62 107 chr4 7664022 7664101 -176624561 - L2 LINE L2 -60 3212 3138 2479 77 6 6 chr4 7664101 7664412 -176624250 + AluY SINE Alu 1 311 0 217 214 62 107 chr4 7664412 7664444 -176624218 - L2 LINE L2 -134 3138 3106 310 354 79 0 chr4 7664459 7664623 -176624039 - LTR16C LTR ERVL -26 465 289 213 261 99 49 chr4 7664730 7664872 -176623790 + L2 LINE L2 2701 2849 -465 390 227 0 11 chr4 7665177 7665265 -176623397 + L2 LINE L2 3186 3272 -41 2312 83 0 35 chr4 7666079 7666393 -176622269 + AluY SINE Alu 1 303 -8 252 333 34 0 chr4 7666396 7666513 -176622149 + MER103 DNA DNA 31 151 -15 184 239 130 33 chr4 7666652 7666744 -176621918 - MIR SINE MIR -78 130 30 22 0 0 0 chr4 7666985 7667007 -176621655 + AT_rich Low_complexity Low_complexity 1 22 0 2469 72 0 0 chr4 7667105 7667396 -176621266 + AluSx SINE Alu 1 291 -21 271 252 216 18 chr4 7667554 7667665 -176620997 + MIR SINE MIR 18 150 -112 266 320 105 63 chr4 7667798 7668034 -176620628 - L2 LINE L2 -75 3197 2941 2312 109 87 32 chr4 7668034 7668438 -176620224 - MSTA LTR MaLR 0 428 3 266 320 105 63 chr4 7668438 7668535 -176620127 - L2 LINE L2 -331 2941 2850 442 283 25 6 chr4 7668760 7668919 -176619743 + L1ME LINE L1 5566 5727 -394 437 290 24 12 chr4 7669330 7669499 -176619163 + GA-rich Low_complexity Low_complexity 5 175 0 191 283 9 88 chr4 7670252 7670365 -176618297 - L2 LINE L2 -237 3035 2932 2492 74 0 3 chr4 7670571 7670867 -176617795 + AluY SINE Alu 1 295 -16 353 232 181 36 chr4 7672732 7672919 -176615743 - MIR SINE MIR -11 251 34 199 189 0 0 chr4 7672992 7673029 -176615633 + MIR SINE MIR 112 148 -114 301 265 225 0 chr4 7673351 7673502 -176615160 + MIR SINE MIR 40 224 -38 281 308 0 33 chr4 7673725 7673816 -176614846 + L2 LINE L2 2673 2760 -554 426 278 49 0 chr4 7674198 7674342 -176614320 + MIR SINE MIR 73 223 -39 244 231 0 0 chr4 7674556 7674608 -176614054 + A-rich Low_complexity Low_complexity 4 55 0 542 286 164 8 chr4 7674623 7674885 -176613777 + L3 LINE CR1 1163 1465 -112 340 333 84 37 chr4 7676877 7677150 -176611512 + MLT1I LTR MaLR 98 383 -26 673 257 53 57 chr4 7677179 7677424 -176611238 - MIR SINE MIR 0 262 19 365 318 20 27 chr4 7677490 7677638 -176611024 - MIR3 SINE MIR -15 193 47 360 119 0 0 chr4 7677923 7677982 -176610680 + (TTCC)n Simple_repeat Simple_repeat 4 62 0 2256 97 7 3 chr4 7677993 7678281 -176610381 - AluSx SINE Alu -3 309 21 225 0 0 0 chr4 7678356 7678381 -176610281 + (CA)n Simple_repeat Simple_repeat 2 26 0 311 222 8 0 chr4 7679079 7679196 -176609466 + (CA)n Simple_repeat Simple_repeat 2 119 0 226 325 40 53 chr4 7679240 7679391 -176609271 + MIR SINE MIR 44 192 -70 222 191 0 0 chr4 7679985 7680027 -176608635 - MIR SINE MIR -113 149 108 27 0 0 0 chr4 7682897 7682924 -176605738 + GC_rich Low_complexity Low_complexity 1 27 0 225 132 57 19 chr4 7683317 7683370 -176605292 + (CCCCG)n Simple_repeat Simple_repeat 2 56 0 292 300 22 11 chr4 7684605 7684695 -176603967 - MIR3 SINE MIR -50 158 68 207 294 0 0 chr4 7685617 7685668 -176602994 - MIR SINE MIR -61 147 97 456 19 0 0 chr4 7685865 7685918 -176602744 + (CA)n Simple_repeat Simple_repeat 1 53 0 219 267 0 0 chr4 7686565 7686625 -176602037 + MIR SINE MIR 30 89 -119 195 255 21 0 chr4 7686836 7686883 -176601779 + L2 LINE L2 3266 3313 0 190 291 45 64 chr4 7688411 7688521 -176600141 - MIR SINE MIR -71 191 84 249 359 132 6 chr4 7688999 7689158 -176599504 - L3 LINE CR1 -3 1574 1396 717 247 67 9 chr4 7689257 7689480 -176599182 - MIR SINE MIR -15 247 12 195 374 17 35 chr4 7690478 7690593 -176598069 - MIR SINE MIR -62 146 34 1956 210 62 12 chr4 7690638 7691119 -176597543 + MLT1D LTR MaLR 1 505 0 276 300 120 0 chr4 7692157 7692257 -176596405 - MIR SINE MIR -132 130 19 575 265 18 6 chr4 7693418 7693588 -176595074 - MER5B DNA MER1_type -3 175 4 380 220 31 101 chr4 7694372 7694531 -176594131 + MIR3 SINE MIR 53 200 -8 282 328 72 0 chr4 7695047 7695172 -176593490 - MIR SINE MIR -97 165 32 360 268 9 36 chr4 7695684 7695796 -176592866 + L2 LINE L2 3205 3313 0 290 374 0 39 chr4 7696219 7696374 -176592288 - MIR SINE MIR -2 260 112 339 316 12 65 chr4 7696463 7696648 -176592014 - MIR3 SINE MIR -54 154 12 246 296 35 35 chr4 7696635 7696750 -176591912 + MIR3 SINE MIR 48 162 -46 * 539 226 57 31 chr4 7696858 7697017 -176591645 - Charlie8 DNA MER1_type -2183 234 72 2580 164 15 4 chr4 7697023 7697494 -176591168 + L1MB3 LINE L1 5677 6152 -31 246 159 0 0 chr4 7697505 7697549 -176591113 - L1MB3 LINE L1 -33 6150 6107 259 289 24 24 chr4 7697552 7697635 -176591027 - Charlie8 DNA MER1_type -2322 95 13 272 283 142 0 chr4 7698227 7698340 -176590322 - MIR SINE MIR -63 145 17 310 314 59 13 chr4 7698711 7698864 -176589798 - MIR SINE MIR -41 221 62 296 235 31 41 chr4 7699401 7699499 -176589163 + Charlie4 DNA MER1_type 1860 1956 -5 225 327 67 53 chr4 7699542 7699692 -176588970 - L2 LINE L2 0 3313 3162 186 267 307 0 chr4 7700010 7700111 -176588551 - L2 LINE L2 -225 3047 2916 373 305 26 19 chr4 7700583 7700737 -176587925 - MER5A DNA MER1_type 0 189 35 392 305 65 5 chr4 7701150 7701350 -176587312 + L1MEd LINE L1 848 1059 -5060 522 259 45 77 chr4 7701362 7701582 -176587080 - L2 LINE L2 -225 3088 2876 304 294 73 0 chr4 7701588 7701724 -176586938 + L3 LINE CR1 1257 1402 -175 252 59 0 0 chr4 7701724 7701758 -176586904 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 381 291 86 32 chr4 7701771 7701991 -176586671 - L2 LINE L2 0 3313 3082 313 318 95 26 chr4 7702634 7702939 -176585723 + L2 LINE L2 2571 2896 -418 4290 173 9 0 chr4 7703021 7703815 -176584847 - L1 LINE L1 -809 5337 4537 2515 61 13 13 chr4 7704594 7704905 -176583757 - AluY SINE Alu 0 311 1 214 405 69 15 chr4 7704975 7705106 -176583556 - L3 LINE CR1 -85 1492 1355 281 114 0 0 chr4 7705389 7705442 -176583220 + MER63A DNA MER1_type 1 53 -157 2373 89 0 10 chr4 7705467 7705771 -176582891 + AluSc SINE Alu 6 306 -3 506 228 57 20 chr4 7705787 7705951 -176582711 + MER63A DNA MER1_type 44 209 -1 342 0 0 0 chr4 7705957 7705995 -176582667 + (TG)n Simple_repeat Simple_repeat 2 39 0 216 67 0 0 chr4 7706018 7706048 -176582614 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 2091 232 48 32 chr4 7706251 7706819 -176581843 - MER74B LTR ERVL 0 622 46 580 181 29 0 chr4 7706825 7706930 -176581732 + MIR SINE MIR 76 183 -79 189 345 0 0 chr4 7707025 7707083 -176581579 + L2 LINE L2 3240 3297 -16 415 287 0 0 chr4 7707539 7707668 -176580994 + L1ME4a LINE L1 5581 5709 -412 367 257 91 79 chr4 7707716 7707906 -176580756 + L1ME4a LINE L1 5836 6031 -90 2497 60 17 0 chr4 7707906 7708205 -176580457 - AluY SINE Alu -7 304 1 367 257 91 79 chr4 7708205 7708279 -176580383 + L1ME4a LINE L1 6031 6103 -18 381 331 127 22 chr4 7709225 7709500 -176579162 + MLT1L LTR MaLR 312 615 0 502 246 8 0 chr4 7710276 7710410 -176578252 - LTR16C LTR ERVL 0 491 357 298 203 14 29 chr4 7710833 7710902 -176577760 - MIR SINE MIR -108 154 87 2408 90 30 0 chr4 7711104 7711404 -176577258 - AluSc SINE Alu 0 309 1 342 331 23 39 chr4 7711980 7712110 -176576552 - MIR SINE MIR -118 144 17 429 278 28 34 chr4 7712491 7712667 -176575995 + MER5B DNA MER1_type 4 178 0 237 191 0 0 chr4 7712688 7712735 -176575927 - MIR SINE MIR -71 137 91 1454 174 62 50 chr4 7713552 7713891 -176574771 - MER2 DNA MER2_type 0 344 2 551 306 153 14 chr4 7713912 7714134 -176574528 + MIR SINE MIR 9 261 -1 2309 110 3 0 chr4 7714177 7714477 -176574185 - AluSx SINE Alu -11 301 1 274 312 52 0 chr4 7716147 7716224 -176572438 - L2 LINE L2 -19 3253 3173 508 285 58 0 chr4 7716825 7716997 -176571665 - MIR SINE MIR -53 209 28 2120 157 38 27 chr4 7717439 7717987 -176570675 + MLT2A2 LTR ERVL 1 554 0 1661 246 19 49 chr4 7719856 7720327 -176568335 + L1MB5 LINE L1 5712 6168 -6 1839 124 39 72 chr4 7721141 7721529 -176567133 + THE1C LTR MaLR 1 375 0 432 55 0 0 chr4 7722046 7722101 -176566561 + (CA)n Simple_repeat Simple_repeat 1 55 0 271 313 0 42 chr4 7722682 7722778 -176565884 + L2 LINE L2 3178 3269 -3 228 346 30 0 chr4 7722790 7722891 -176565771 - L1ME LINE L1 -320 5801 5698 308 244 13 0 chr4 7723888 7723966 -176564696 + MIR3 SINE MIR 107 185 -23 228 322 44 11 chr4 7724467 7724557 -176564105 + L2 LINE L2 3140 3232 -40 204 324 29 29 chr4 7725161 7725263 -176563399 - MIR SINE MIR -63 145 44 1568 172 0 23 chr4 7726178 7726439 -176562223 - AluJo SINE Alu -53 259 5 379 304 43 7 chr4 7726505 7726643 -176562019 + MIR SINE MIR 108 250 -12 310 248 9 29 chr4 7727588 7727693 -176560969 + GA-rich Low_complexity Low_complexity 4 106 0 280 243 90 5 chr4 7727805 7727926 -176560736 + MIR SINE MIR 94 227 -35 223 325 111 13 chr4 7728068 7728302 -176560360 + L2 LINE L2 2676 2932 -382 890 254 39 4 chr4 7728560 7728792 -176559870 + MIR SINE MIR 2 241 -21 414 293 230 11 chr4 7728963 7729137 -176559525 + L1MEd LINE L1 300 511 -5608 295 323 67 24 chr4 7729179 7729207 -176559455 + L1MEd LINE L1 652 677 -5442 2455 85 0 0 chr4 7729207 7729512 -176559150 + AluSg SINE Alu 1 305 -5 295 323 67 24 chr4 7729512 7729647 -176559015 + L1MEd LINE L1 677 822 -5297 287 217 161 139 chr4 7729675 7729905 -176558757 - MIR SINE MIR -5 257 23 377 312 74 56 chr4 7729905 7729985 -176558677 + L1MEd LINE L1 986 1063 -1427 2429 92 0 0 chr4 7729985 7730289 -176558373 + AluSq SINE Alu 5 308 -5 377 312 74 56 chr4 7730289 7730890 -176557772 + L1MEd LINE L1 1063 1775 -715 1167 292 50 25 chr4 7731282 7732057 -176556605 + L1MEd LINE L1 2114 2908 -3221 257 317 79 30 chr4 7732249 7732350 -176556312 + MIR3 SINE MIR 65 170 -38 192 77 0 0 chr4 7732483 7732509 -176556153 + (T)n Simple_repeat Simple_repeat 1 26 0 2223 80 7 11 chr4 7732661 7732974 -176555688 + AluSq SINE Alu 1 312 0 2838 129 16 0 chr4 7733567 7733993 -176554669 + MER72 LTR ERV1 290 722 0 1508 245 55 52 chr4 7734285 7734828 -176553834 + MLT1H LTR MaLR 2 546 -3 747 313 9 8 chr4 7734867 7735113 -176553549 - MIR SINE MIR -1 261 16 212 305 29 38 chr4 7735250 7735355 -176553307 - L2 LINE L2 0 3272 3169 195 161 232 0 chr4 7735429 7735485 -176553177 - MIR SINE MIR -113 149 81 399 286 67 37 chr4 7735983 7736212 -176552450 + MIR SINE MIR 4 237 -25 673 229 202 0 chr4 7736258 7736476 -176552186 - MIR SINE MIR 0 262 1 272 264 74 47 chr4 7736558 7736706 -176551956 + L1ME4a LINE L1 5967 6118 -3 381 256 31 56 chr4 7737183 7737343 -176551319 + MIR SINE MIR 57 212 -50 340 326 0 0 chr4 7738637 7738735 -176549927 - MIR SINE MIR -119 143 46 238 250 44 0 chr4 7739279 7739347 -176549315 - MIR3 SINE MIR -48 160 90 537 291 58 5 chr4 7739571 7739777 -176548885 + LTR33 LTR ERVL 50 266 -255 2976 128 22 27 chr4 7740086 7740644 -176548018 + LTR10E LTR ERV1 11 609 0 621 244 51 97 chr4 7741955 7742084 -176546578 + L1MC5 LINE L1 7120 7253 -708 2314 123 0 0 chr4 7742084 7742216 -176546446 + AluSx SINE Alu 1 132 -180 2225 104 7 3 chr4 7742216 7742513 -176546149 + AluSc SINE Alu 1 298 -11 2314 123 0 0 chr4 7742513 7742689 -176545973 + AluSx SINE Alu 131 309 -3 621 244 51 97 chr4 7742689 7742990 -176545672 + L1MC5 LINE L1 7253 7530 -431 1732 182 6 88 chr4 7742992 7743406 -176545256 + L1MB3 LINE L1 5744 6190 7 2391 99 0 7 chr4 7743406 7743708 -176544954 + AluSq SINE Alu 1 300 -13 1732 182 6 88 chr4 7743708 7743738 -176544924 + L1MB3 LINE L1 6190 6150 -33 348 67 34 157 chr4 7743738 7743827 -176544835 + MADE1 DNA Mariner 2 79 -1 1732 182 6 88 chr4 7743827 7743858 -176544804 + L1MB3 LINE L1 6149 6181 -2 720 257 124 40 chr4 7743858 7744212 -176544450 + L1MC5 LINE L1 7533 7916 -45 191 219 45 6 chr4 7744230 7744307 -176544355 + MIR SINE MIR 49 115 -93 201 303 15 0 chr4 7744496 7744562 -176544100 + L2 LINE L2 3231 3297 -16 348 83 0 0 chr4 7744570 7744618 -176544044 + (TGAA)n Simple_repeat Simple_repeat 2 49 0 341 245 51 10 chr4 7745084 7745182 -176543480 - MIR SINE MIR -75 133 32 325 247 12 0 chr4 7745781 7745862 -176542800 - L2 LINE L2 -6 3307 3226 319 73 36 0 chr4 7745932 7745987 -176542675 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 291 217 58 92 chr4 7746906 7747026 -176541636 + MLT1H LTR MaLR 421 536 -13 239 235 0 0 chr4 7747046 7747097 -176541565 - MIR SINE MIR -145 117 67 237 258 48 16 chr4 7747497 7747559 -176541103 - MER91A DNA MER1_type -10 186 123 324 297 195 0 chr4 7747598 7747726 -176540936 - MER91A DNA MER1_type -43 153 1 329 301 75 8 chr4 7748887 7749020 -176539642 - MIR SINE MIR -21 241 100 303 302 35 59 chr4 7749582 7749751 -176538911 + L1MC/D LINE L1 5494 5658 -2150 381 193 36 0 chr4 7749751 7749834 -176538828 - Tigger3(Golem) DNA MER2_type -1 3028 2943 390 252 109 0 chr4 7749940 7750087 -176538575 + L2 LINE L2 2928 3090 -182 360 206 63 48 chr4 7751556 7751682 -176536980 + L1MD3 LINE L1 7853 7980 -15 209 354 135 25 chr4 7752100 7752419 -176536243 + L2 LINE L2 2918 3271 -1 1092 176 39 5 chr4 7752603 7752808 -176535854 - MER20 DNA MER1_type -7 212 1 185 384 73 33 chr4 7753418 7753569 -176535093 - MIR SINE MIR 0 262 106 254 315 19 94 chr4 7754266 7754479 -176534183 - L2 LINE L2 -80 3192 2996 940 81 0 0 chr4 7754579 7754690 -176533972 + AluSx SINE Alu 13 123 -190 1362 126 0 0 chr4 7754845 7755027 -176533635 + AluSx SINE Alu 112 293 -19 266 273 13 0 chr4 7755048 7755125 -176533537 - MER116 DNA Mariner -1 79 2 866 264 35 9 chr4 7755126 7755353 -176533309 - MIR SINE MIR -3 259 27 228 313 15 0 chr4 7755865 7755932 -176532730 - L2 LINE L2 -4 3268 3201 457 311 79 6 chr4 7756314 7756491 -176532171 + MIR SINE MIR 10 199 -63 2288 112 23 0 chr4 7756691 7756996 -176531666 - AluSx SINE Alu 0 312 1 262 342 0 52 chr4 7757152 7757307 -176531355 - MIR SINE MIR 0 262 116 334 301 128 15 chr4 7757428 7757624 -176531038 - MIR SINE MIR -19 243 26 2532 79 0 0 chr4 7758189 7758492 -176530170 + AluSg SINE Alu 1 303 -7 199 315 33 22 chr4 7759238 7759330 -176529332 - MIR3 SINE MIR -49 159 67 266 284 68 0 chr4 7759518 7759592 -176529070 - MIR SINE MIR -111 151 73 240 70 23 0 chr4 7759780 7759823 -176528839 + L1PB1 LINE L1 6107 6150 -1 2158 127 3 0 chr4 7759895 7760202 -176528460 + AluSx SINE Alu 1 308 -4 2285 90 14 0 chr4 7760361 7760649 -176528013 - AluSc SINE Alu -17 292 1 303 297 55 21 chr4 7760776 7760921 -176527741 - L1ME LINE L1 -380 5741 5592 370 336 0 15 chr4 7761865 7762002 -176526660 + L2 LINE L2 2949 3083 -189 259 330 43 27 chr4 7762201 7762386 -176526276 + L2 LINE L2 2864 3051 -221 411 380 22 11 chr4 7762638 7762822 -176525840 + MIR SINE MIR 7 192 -70 255 276 20 51 chr4 7763315 7763413 -176525249 - MIR SINE MIR -8 254 160 2450 75 7 0 chr4 7765710 7766004 -176522658 - AluSc SINE Alu -13 296 1 259 303 65 45 chr4 7766138 7766293 -176522369 + MIR3 SINE MIR 14 171 -37 289 234 70 16 chr4 7766549 7766677 -176521985 + MIR3 SINE MIR 3 137 -71 196 330 70 51 chr4 7766719 7766992 -176521670 - L2 LINE L2 -1 3271 2994 209 253 209 0 chr4 7767792 7767883 -176520779 + MIR SINE MIR 36 145 -63 263 254 160 41 chr4 7768178 7768347 -176520315 - MIR3 SINE MIR -17 191 3 2554 86 0 3 chr4 7768558 7768871 -176519791 + AluSx SINE Alu 1 312 0 1652 136 93 4 chr4 7769197 7769490 -176519172 - AluJb SINE Alu 0 316 1 2492 68 0 34 chr4 7769865 7770187 -176518475 + AluY SINE Alu 1 311 0 736 264 50 21 chr4 7770270 7770512 -176518150 + MIR SINE MIR 14 262 0 859 279 119 22 chr4 7770516 7770968 -176517694 + MLT1H1 LTR MaLR 5 500 -55 245 371 19 9 chr4 7771207 7771420 -176517242 - L1MC/D LINE L1 -1959 5849 5635 1266 195 19 11 chr4 7771567 7771930 -176516732 + L1M4 LINE L1 5188 5556 -628 504 260 82 32 chr4 7771953 7772194 -176516468 + L1ME LINE L1 1003 1316 -5056 324 306 46 31 chr4 7772279 7772475 -176516187 + L1ME LINE L1 5477 5675 -446 506 363 46 16 chr4 7772663 7773159 -176515503 + L1MC4a LINE L1 5400 5910 -1898 255 121 35 17 chr4 7773256 7773314 -176515348 - L1MD1 LINE L1 -10 6232 6174 297 133 0 0 chr4 7773328 7773373 -176515289 - Alu SINE Alu -13 289 245 755 244 45 25 chr4 7773373 7773574 -176515088 - L1MD2 LINE L1 -76 6283 6079 220 255 0 0 chr4 7774771 7774822 -176513840 + (CA)n Simple_repeat Simple_repeat 2 52 0 21 36 0 0 chr4 7774829 7774857 -176513805 + AT_rich Low_complexity Low_complexity 1 28 0 2501 83 3 0 chr4 7775104 7775405 -176513257 - AluSp SINE Alu -11 302 1 635 250 38 19 chr4 7776268 7776428 -176512234 + MER63 DNA MER1_type 1 789 -47 247 319 14 0 chr4 7776677 7776749 -176511913 - L2 LINE L2 -522 2792 2720 779 272 92 10 chr4 7776862 7777237 -176511425 + L2 LINE L2 2624 3040 -273 597 318 68 58 chr4 7777265 7779389 -176509273 + L1MEc LINE L1 94 2246 -4150 2139 138 0 3 chr4 7779389 7779693 -176508969 + AluSx SINE Alu 3 305 -7 597 318 68 58 chr4 7779693 7779746 -176508916 + L1MEc LINE L1 2246 2297 -4099 * 1120 263 45 12 chr4 7779721 7780147 -176508515 + L1MEc LINE L1 2561 3000 -3215 2490 87 0 0 chr4 7780240 7780538 -176508124 - AluSg SINE Alu -12 298 1 667 226 99 31 chr4 7780638 7780830 -176507832 + L1MEc LINE L1 2987 3207 -3008 2266 113 3 3 chr4 7780830 7781140 -176507522 + AluSx SINE Alu 1 310 -2 667 226 99 31 chr4 7781140 7781239 -176507423 + L1MEc LINE L1 3207 3298 -2917 280 242 19 12 chr4 7781253 7781414 -176507248 + GA-rich Low_complexity Low_complexity 1 162 0 186 296 43 26 chr4 7781530 7781645 -176507017 - MIR SINE MIR -126 136 20 462 311 37 47 chr4 7781797 7781987 -176506675 + MIR SINE MIR 10 197 -65 759 291 112 31 chr4 7784642 7784919 -176503743 + L2 LINE L2 2894 3212 -101 479 271 155 0 chr4 7784919 7785100 -176503562 - MER3 DNA MER1_type 0 209 1 759 291 112 31 chr4 7785100 7785207 -176503455 + L2 LINE L2 3212 3309 -4 328 191 0 0 chr4 7785731 7785794 -176502868 + MIR SINE MIR 83 145 -117 208 200 0 0 chr4 7786910 7786950 -176501712 + MIR SINE MIR 106 145 -117 2268 125 0 0 chr4 7787236 7787548 -176501114 + AluSx SINE Alu 1 312 0 23 0 0 0 chr4 7787548 7787571 -176501091 + AT_rich Low_complexity Low_complexity 1 23 0 221 310 31 33 chr4 7787824 7787991 -176500671 + MIR SINE MIR 36 149 -59 192 156 0 0 chr4 7788281 7788313 -176500349 - MIR SINE MIR -67 141 110 2145 114 13 13 chr4 7788493 7788808 -176499854 + MER1B DNA MER1_type 25 339 0 396 0 0 0 chr4 7789176 7789220 -176499442 + (CA)n Simple_repeat Simple_repeat 2 45 0 262 267 158 10 chr4 7789338 7789439 -176499223 + L2 LINE L2 3183 3298 -15 347 266 0 0 chr4 7789496 7789575 -176499087 - L2 LINE L2 -3 3310 3232 324 287 32 25 chr4 7790672 7790829 -176497833 + GA-rich Low_complexity Low_complexity 2 159 0 357 259 35 9 chr4 7790961 7791077 -176497585 - L2 LINE L2 -8 3305 3187 376 352 35 0 chr4 7791115 7791257 -176497405 - MIR3 SINE MIR -45 163 17 479 317 52 46 chr4 7791416 7791854 -176496808 - L1ME4a LINE L1 -140 5981 5541 317 303 53 62 chr4 7791884 7792092 -176496570 - L1ME4a LINE L1 -2330 5478 5273 404 183 32 11 chr4 7792989 7793082 -176495580 + MIR SINE MIR 89 183 -79 394 182 0 13 chr4 7794557 7794634 -176494028 + MLT1A1 LTR MaLR 8 83 -282 1713 79 19 5 chr4 7794853 7795069 -176493593 - AluSg/x SINE Alu -11 301 83 487 284 77 7 chr4 7795374 7795529 -176493133 - L2 LINE L2 -5 3308 3143 1672 190 91 23 chr4 7795725 7796156 -176492506 + MLT1C LTR MaLR 6 465 -2 282 309 73 0 chr4 7796538 7796661 -176492001 + MIR SINE MIR 71 202 -60 958 148 9 7 chr4 7797110 7797360 -176491302 + (ATGGTG)n Simple_repeat Simple_repeat 1 427 0 1006 137 12 2 chr4 7797360 7797782 -176490880 + (ATG)n Simple_repeat Simple_repeat 1 604 0 1244 154 25 57 chr4 7797887 7798167 -176490495 - MER46B DNA MER2_type -90 146 1 1708 191 49 47 chr4 7798238 7798629 -176490033 + MLT1C LTR MaLR 1 395 -72 2046 143 13 3 chr4 7798629 7798930 -176489732 - AluJo SINE Alu -4 308 5 1708 191 49 47 chr4 7798930 7799004 -176489658 + MLT1C LTR MaLR 395 467 0 3566 214 26 5 chr4 7799374 7800187 -176488475 - L1M4 LINE L1 -1805 4341 3512 747 237 40 0 chr4 7800672 7800849 -176487813 - MER5A DNA MER1_type -5 184 1 418 319 106 0 chr4 7801239 7801427 -176487235 - MIR SINE MIR -27 235 28 361 308 165 21 chr4 7802314 7802551 -176486111 + L1ME4a LINE L1 5850 6120 -1 2279 117 0 13 chr4 7802984 7803300 -176485362 - AluSx SINE Alu 0 312 1 313 315 2 2 chr4 7803433 7803542 -176485120 + MIR SINE MIR 39 147 -61 213 121 0 0 chr4 7804187 7804220 -176484442 + (A)n Simple_repeat Simple_repeat 1 33 0 1625 201 69 38 chr4 7804376 7804650 -176484012 - MLT1C LTR MaLR 0 467 170 2315 99 0 0 chr4 7804650 7804964 -176483698 - AluSg SINE Alu 0 314 1 1625 201 69 38 chr4 7804964 7805134 -176483528 - MLT1C LTR MaLR -297 170 7 375 23 0 0 chr4 7805344 7805388 -176483274 + (TG)n Simple_repeat Simple_repeat 2 45 0 520 217 0 25 chr4 7805594 7805714 -176482948 - MIR SINE MIR -97 165 49 2209 94 39 0 chr4 7805907 7806207 -176482455 + AluSx SINE Alu 1 289 -23 249 229 29 14 chr4 7806704 7806774 -176481888 - LTR67 LTR ERVL -387 170 100 250 81 0 0 chr4 7807473 7807510 -176481152 + MIR SINE MIR 107 143 -65 247 330 62 9 chr4 7807859 7807971 -176480691 + MIR SINE MIR 78 195 -67 180 77 0 0 chr4 7808177 7808203 -176480459 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1959 123 0 0 chr4 7808204 7808480 -176480182 - AluSx SINE Alu -36 276 1 2145 163 31 16 chr4 7808932 7809313 -176479349 - MLT1B LTR MaLR 0 390 4 184 381 63 16 chr4 7809533 7809659 -176479003 + L2 LINE L2 3098 3229 -43 288 309 99 89 chr4 7809706 7810020 -176478642 - L2 LINE L2 -5 3267 2951 226 216 0 0 chr4 7810020 7810071 -176478591 - MLT1I LTR MaLR -1 408 358 2095 131 40 35 chr4 7810078 7810451 -176478211 - THE1C LTR MaLR 0 375 1 22 0 0 0 chr4 7811400 7811422 -176477240 + AT_rich Low_complexity Low_complexity 1 22 0 3321 168 114 26 chr4 7811602 7811777 -176476885 - L1MCa LINE L1 -3926 2500 2342 2213 110 0 0 chr4 7811777 7812085 -176476577 - AluSx SINE Alu -4 308 1 3321 168 114 26 chr4 7812085 7812706 -176475956 - L1MCa LINE L1 -4084 2342 1777 1923 148 0 0 chr4 7812706 7812997 -176475665 - AluSx SINE Alu -21 291 1 3321 168 114 26 chr4 7812997 7813269 -176475393 - L1MCa LINE L1 -4649 1777 1530 1487 204 42 0 chr4 7813269 7813553 -176475109 - AluJb SINE Alu -16 296 1 3321 168 114 26 chr4 7813553 7813985 -176474677 - L1MCa LINE L1 -4896 1530 777 883 212 93 0 chr4 7813989 7814215 -176474447 - L1MCa LINE L1 -6173 253 7 243 311 100 0 chr4 7816176 7816266 -176472396 - MIR SINE MIR -115 147 49 473 306 47 58 chr4 7816545 7816888 -176471774 + L2 LINE L2 2932 3270 -2 2057 117 10 0 chr4 7818153 7818443 -176470219 + AluSx SINE Alu 1 293 -19 547 205 18 0 chr4 7818632 7818744 -176469918 - MER81 DNA DNA 0 114 1 192 194 113 32 chr4 7820116 7820178 -176468484 + MIR SINE MIR 34 100 -108 502 337 150 13 chr4 7820574 7821186 -176467476 + L1ME4a LINE L1 5301 5996 -125 2098 110 0 25 chr4 7821579 7821898 -176466764 - AluSx SINE Alu -1 311 1 264 363 137 0 chr4 7822739 7822929 -176465733 - MIR SINE MIR 0 262 47 356 278 189 22 chr4 7823603 7823772 -176464890 - MIR SINE MIR -26 236 34 2207 79 3 55 chr4 7823772 7824102 -176464560 - AluSq SINE Alu 0 313 1 210 154 0 0 chr4 7824770 7824809 -176463853 + A-rich Low_complexity Low_complexity 1 39 0 2011 132 3 16 chr4 7824927 7825237 -176463425 + AluSx SINE Alu 1 306 -6 237 65 0 0 chr4 7826461 7826492 -176462170 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 243 275 154 0 chr4 7826910 7827001 -176461661 + L2 LINE L2 3168 3272 0 183 343 14 0 chr4 7827001 7827071 -176461591 - MIR SINE MIR -129 133 63 472 243 69 23 chr4 7827762 7827935 -176460727 + L1MB7 LINE L1 5943 6123 -61 250 254 34 68 chr4 7829753 7829871 -176458791 + L2 LINE L2 3158 3271 -1 618 236 23 23 chr4 7830201 7830375 -176458287 + MLT1H LTR MaLR 1 174 -375 585 176 17 17 chr4 7830490 7830609 -176458053 + MLT1H LTR MaLR 431 549 0 3574 139 13 8 chr4 7830773 7831372 -176457290 + LTR10E LTR ERV1 1 602 -31 659 245 13 0 chr4 7831546 7831701 -176456961 - MIR SINE MIR -95 167 11 868 234 92 77 chr4 7833519 7833844 -176454818 - MER102a DNA MER1_type 0 330 1 369 351 48 0 chr4 7834093 7834258 -176454404 + MIR SINE MIR 20 192 -70 290 333 25 44 chr4 7834312 7834516 -176454146 + L3 LINE CR1 1272 1471 -106 2115 103 17 0 chr4 7835427 7835718 -176452944 + AluSx SINE Alu 1 296 -16 213 319 138 11 chr4 7837782 7837970 -176450692 + MIR SINE MIR 36 247 -15 390 279 41 7 chr4 7838368 7838515 -176450147 - L2 LINE L2 0 3272 3121 405 291 159 28 chr4 7839040 7839360 -176449302 + L2 LINE L2 2259 2620 -694 542 284 157 25 chr4 7839400 7839794 -176448868 + L2 LINE L2 2804 3249 -64 1945 144 0 38 chr4 7841112 7841432 -176447230 - AluSx SINE Alu -4 308 1 1968 144 0 13 chr4 7842029 7842334 -176446328 + AluJb SINE Alu 1 301 -11 3087 102 61 5 chr4 7844494 7844934 -176443728 + MER4C LTR ERV1 1 465 0 1818 87 30 26 chr4 7845394 7845660 -176443002 + AluSx SINE Alu 36 302 -10 222 274 38 29 chr4 7846221 7846325 -176442337 - MIR SINE MIR -23 185 75 1233 141 34 43 chr4 7847094 7847282 -176441380 + MER2 DNA MER2_type 2 189 -156 1894 176 71 0 chr4 7847282 7847606 -176441056 + MER7A DNA MER2_type 1 345 -1 1233 141 34 43 chr4 7847606 7847651 -176441011 + MER2 DNA MER2_type 189 233 -112 705 119 0 0 chr4 7847655 7847756 -176440906 + AluSg/x SINE Alu 204 304 -6 665 167 0 18 chr4 7847756 7847870 -176440792 + MER2 DNA MER2_type 234 345 0 301 241 138 0 chr4 7848280 7848367 -176440295 - L2 LINE L2 -8 3264 3166 1892 119 10 42 chr4 7848458 7848769 -176439893 + AluSx SINE Alu 1 301 -11 1235 129 0 0 chr4 7848769 7848947 -176439715 + AluSg/x SINE Alu 134 311 -1 470 265 54 58 chr4 7848952 7849246 -176439416 + L1MC5 LINE L1 7238 7530 -431 1754 182 6 88 chr4 7849248 7849662 -176439000 + L1MB3 LINE L1 5744 6190 7 2252 99 0 7 chr4 7849662 7849964 -176438698 + AluSq SINE Alu 1 300 -13 1754 182 6 88 chr4 7849964 7849994 -176438668 + L1MB3 LINE L1 6190 6150 -33 383 67 34 157 chr4 7849994 7850083 -176438579 + MADE1 DNA Mariner 2 79 -1 1754 182 6 88 chr4 7850083 7850114 -176438548 + L1MB3 LINE L1 6149 6181 -2 441 251 23 69 chr4 7850114 7850289 -176438373 + L1MC5 LINE L1 7533 7699 -262 216 239 0 0 chr4 7850997 7851043 -176437619 + (CCG)n Simple_repeat Simple_repeat 2 47 0 568 195 86 29 chr4 7851121 7851295 -176437367 - MER96B DNA MER1_type? -233 184 1 804 249 66 8 chr4 7852962 7853203 -176435459 + MER112 DNA MER1_type 2 256 0 972 203 30 5 chr4 7853406 7853608 -176435054 - MIR SINE MIR -42 220 14 316 311 142 16 chr4 7854809 7854999 -176433663 - MIR SINE MIR -48 214 1 360 360 27 0 chr4 7855536 7855686 -176432976 + MIR SINE MIR 48 201 -61 1046 253 88 10 chr4 7856014 7856442 -176432220 + MLT1D LTR MaLR 3 505 0 2265 75 7 0 chr4 7856538 7856833 -176431829 - AluSp SINE Alu -16 297 1 282 268 10 21 chr4 7856833 7856930 -176431732 + MIR SINE MIR 167 262 0 213 275 43 0 chr4 7857213 7857282 -176431380 + MIR SINE MIR 101 172 -90 1822 168 29 9 chr4 7857672 7858018 -176430644 + MLT1B LTR MaLR 1 353 -37 846 147 8 0 chr4 7858023 7858152 -176430510 + MER6A DNA MER2_type 32 161 -444 765 273 84 12 chr4 7858168 7858490 -176430172 - MLT1D LTR MaLR -76 429 85 * 2067 115 81 56 chr4 7858469 7858799 -176429863 + MER6A DNA MER2_type 188 531 -334 2058 147 0 0 chr4 7858799 7859111 -176429551 + AluSx SINE Alu 1 312 0 2067 115 81 56 chr4 7859111 7859188 -176429474 + MER6A DNA MER2_type 531 605 0 714 269 145 31 chr4 7859652 7859930 -176428732 - LTR33A LTR ERVL -18 505 260 1411 281 36 25 chr4 7859930 7860368 -176428294 + LTR47B LTR ERVL 1 443 0 714 269 145 31 chr4 7860368 7860538 -176428124 - LTR33A LTR ERVL -263 260 6 449 322 39 30 chr4 7861468 7861667 -176426995 - MIR SINE MIR -54 208 9 2914 212 66 29 chr4 7862133 7862817 -176425845 + MER67C LTR ERV1 2 710 0 567 297 128 0 chr4 7862902 7863097 -176425565 + MIR SINE MIR 21 240 -22 284 333 0 0 chr4 7864552 7864633 -176424029 - MER81 DNA DNA -16 98 18 286 298 53 0 chr4 7867815 7867909 -176420753 - L2 LINE L2 -1 3312 3214 269 279 0 0 chr4 7868786 7868865 -176419797 + A-rich Low_complexity Low_complexity 1 79 0 1482 116 36 18 chr4 7869291 7869515 -176419147 - MER30 DNA MER1_type 0 230 3 425 313 55 0 chr4 7869869 7869997 -176418665 - MIR3 SINE MIR -6 202 68 220 277 189 14 chr4 7871117 7871265 -176417397 - L3 LINE CR1 -216 1361 1188 227 289 132 26 chr4 7871423 7871537 -176417125 - L2 LINE L2 -4 3268 3143 367 244 0 0 chr4 7871669 7871751 -176416911 + MIR SINE MIR 73 154 -108 628 314 51 8 chr4 7872378 7872633 -176416029 - L1ME3 LINE L1 -1 6161 5896 425 168 179 0 chr4 7872875 7872970 -176415692 - MER81 DNA DNA -1 113 2 694 257 38 16 chr4 7873319 7873502 -176415160 - MER5A DNA MER1_type 0 189 3 1910 103 57 0 chr4 7873683 7873965 -176414697 + AluSx SINE Alu 1 298 -14 290 181 14 14 chr4 7874027 7874099 -176414563 - L2 LINE L2 -277 2995 2924 195 270 79 0 chr4 7874182 7874245 -176414417 - L2 LINE L2 -556 2758 2691 347 288 183 0 chr4 7874302 7874455 -176414207 + MIR SINE MIR 79 259 -3 198 368 11 0 chr4 7874596 7874683 -176413979 + MIR SINE MIR 51 138 -124 478 238 13 64 chr4 7874884 7875070 -176413592 + MIR SINE MIR 5 181 -67 187 244 0 0 chr4 7875071 7875112 -176413550 - L2 LINE L2 -5 3267 3227 444 51 0 0 chr4 7875182 7875241 -176413421 + (CAAAA)n Simple_repeat Simple_repeat 4 62 0 538 304 134 5 chr4 7876004 7876221 -176412441 - MIR SINE MIR 0 262 18 738 278 52 0 chr4 7876727 7876921 -176411741 - MIR SINE MIR -51 211 8 1689 170 46 51 chr4 7876983 7877056 -176411606 + MLT2D LTR ERVL 3 75 -339 1926 129 4 0 chr4 7877056 7877356 -176411306 + AluSx SINE Alu 5 305 0 1689 170 46 51 chr4 7877356 7877675 -176410987 + MLT2D LTR ERVL 75 394 -20 531 249 103 12 chr4 7877742 7877907 -176410755 + MIR SINE MIR 73 252 -10 452 327 12 6 chr4 7883785 7883950 -176404712 - MIR3 SINE MIR -39 169 4 190 361 83 8 chr4 7884116 7884249 -176404413 - MIR SINE MIR -7 255 113 303 333 49 24 chr4 7884388 7884511 -176404151 + L2 LINE L2 3145 3270 -2 442 312 91 15 chr4 7885085 7885284 -176403378 - MIR SINE MIR -33 229 16 473 306 47 58 chr4 7886515 7886858 -176401804 + L2 LINE L2 2932 3270 -2 2057 117 10 0 chr4 7888123 7888413 -176400249 + AluSx SINE Alu 1 293 -19 547 205 18 0 chr4 7888602 7888714 -176399948 - MER81 DNA DNA 0 114 1 213 177 113 32 chr4 7890086 7890148 -176398514 + MIR SINE MIR 34 100 -108 498 337 150 13 chr4 7890544 7891156 -176397506 + L1ME4a LINE L1 5301 5996 -125 2098 110 0 25 chr4 7891549 7891868 -176396794 - AluSx SINE Alu -1 311 1 264 363 137 0 chr4 7892709 7892899 -176395763 - MIR SINE MIR 0 262 47 356 278 189 22 chr4 7893573 7893742 -176394920 - MIR SINE MIR -26 236 34 2207 79 3 55 chr4 7893742 7894072 -176394590 - AluSq SINE Alu 0 313 1 210 154 0 0 chr4 7894740 7894779 -176393883 + A-rich Low_complexity Low_complexity 1 39 0 2011 132 3 16 chr4 7894897 7895207 -176393455 + AluSx SINE Alu 1 306 -6 237 65 0 0 chr4 7896431 7896462 -176392200 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 243 275 154 0 chr4 7896880 7896971 -176391691 + L2 LINE L2 3168 3272 0 183 343 14 0 chr4 7896971 7897041 -176391621 - MIR SINE MIR -129 133 63 472 243 69 23 chr4 7897732 7897905 -176390757 + L1MB7 LINE L1 5943 6123 -61 250 254 34 68 chr4 7899723 7899841 -176388821 + L2 LINE L2 3158 3271 -1 618 236 23 23 chr4 7900171 7900345 -176388317 + MLT1H LTR MaLR 1 174 -375 585 176 17 17 chr4 7900460 7900579 -176388083 + MLT1H LTR MaLR 431 549 0 3574 139 13 8 chr4 7900743 7901342 -176387320 + LTR10E LTR ERV1 1 602 -31 659 245 13 0 chr4 7901516 7901671 -176386991 - MIR SINE MIR -95 167 11 868 234 92 77 chr4 7903489 7903814 -176384848 - MER102a DNA MER1_type 0 330 1 369 351 48 0 chr4 7904063 7904228 -176384434 + MIR SINE MIR 20 192 -70 290 333 25 44 chr4 7904282 7904486 -176384176 + L3 LINE CR1 1272 1471 -106 2115 103 17 0 chr4 7905397 7905688 -176382974 + AluSx SINE Alu 1 296 -16 206 296 100 37 chr4 7907710 7907940 -176380722 + MIR SINE MIR 2 247 -15 401 247 71 13 chr4 7908338 7908492 -176380170 - L2 LINE L2 0 3272 3110 418 281 163 31 chr4 7909010 7909330 -176379332 + L2 LINE L2 2259 2620 -694 547 264 170 38 chr4 7909370 7909764 -176378898 + L2 LINE L2 2804 3249 -64 2082 134 0 47 chr4 7911082 7911402 -176377260 - AluSx SINE Alu -7 305 1 2095 142 0 13 chr4 7911999 7912302 -176376360 + AluJb SINE Alu 1 299 -13 3015 102 61 5 chr4 7914464 7914904 -176373758 + MER4C LTR ERV1 1 465 0 1930 87 30 26 chr4 7915364 7915630 -176373032 + AluSx SINE Alu 36 302 -10 234 274 38 29 chr4 7916191 7916295 -176372367 - MIR SINE MIR -23 185 75 1258 142 34 39 chr4 7917064 7917251 -176371411 + MER2 DNA MER2_type 2 189 -156 1836 176 71 0 chr4 7917251 7917575 -176371087 + MER7A DNA MER2_type 1 345 -1 1258 142 34 39 chr4 7917575 7917620 -176371042 + MER2 DNA MER2_type 189 233 -112 701 119 0 0 chr4 7917624 7917725 -176370937 + AluSg/x SINE Alu 204 304 -6 658 167 0 18 chr4 7917725 7917839 -176370823 + MER2 DNA MER2_type 234 345 0 317 241 138 0 chr4 7918249 7918336 -176370326 - L2 LINE L2 -8 3264 3166 2318 110 3 16 chr4 7918427 7918744 -176369918 + AluSq SINE Alu 1 313 0 267 333 86 17 chr4 7918841 7919015 -176369647 + MIR SINE MIR 7 192 -70 2127 116 36 39 chr4 7919186 7919548 -176369114 - MER46B DNA MER2_type 0 236 1 1883 196 50 33 chr4 7919619 7920010 -176368652 + MLT1C LTR MaLR 1 403 -64 2116 138 13 3 chr4 7920010 7920315 -176368347 - AluJo SINE Alu -4 308 1 1883 196 50 33 chr4 7920315 7920382 -176368280 + MLT1C LTR MaLR 403 467 0 345 220 122 114 chr4 7920462 7920645 -176368017 + Charlie8 DNA MER1_type 244 431 -1986 1677 116 0 0 chr4 7920645 7920869 -176367793 + AluSg/x SINE Alu 80 303 -7 345 220 122 114 chr4 7920869 7920930 -176367732 + Charlie8 DNA MER1_type 431 490 -1927 591 175 0 0 chr4 7921792 7921912 -176366750 + (TGGA)n Simple_repeat Simple_repeat 3 122 0 204 67 0 0 chr4 7922331 7922361 -176366301 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 2055 128 60 31 chr4 7922974 7923327 -176365335 + THE1B LTR MaLR 1 363 -1 306 0 0 0 chr4 7923518 7923552 -176365110 + (CA)n Simple_repeat Simple_repeat 2 35 0 361 292 83 8 chr4 7923810 7923930 -176364732 - MIR SINE MIR -55 207 79 405 264 104 0 chr4 7924425 7924531 -176364131 + MIR SINE MIR 74 190 -72 1648 172 15 7 chr4 7925056 7925329 -176363333 - AluJb SINE Alu -27 285 11 532 247 25 15 chr4 7925339 7925515 -176363147 + L1MC4a LINE L1 5723 5801 -383 2434 91 0 0 chr4 7925659 7925957 -176362705 + AluSx SINE Alu 1 298 -14 2288 112 3 3 chr4 7926574 7926879 -176361783 + AluSp SINE Alu 1 305 -8 259 277 33 97 chr4 7926896 7927196 -176361466 - L1ME4a LINE L1 -205 5916 5636 252 0 0 0 chr4 7927505 7927533 -176361129 + (A)n Simple_repeat Simple_repeat 1 28 0 183 80 0 0 chr4 7927837 7927862 -176360800 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 269 316 159 20 chr4 7928490 7929051 -176359611 + L2 LINE L2 1762 2400 -914 1366 242 92 9 chr4 7929199 7929624 -176359038 + MLT1C LTR MaLR 8 467 0 380 327 39 54 chr4 7929782 7929987 -176358675 + MIR SINE MIR 51 252 -10 360 243 96 96 chr4 7930630 7930869 -176357793 - L2 LINE L2 -1 3312 3074 563 246 106 80 chr4 7931483 7931881 -176356781 + MLT1K LTR MaLR 169 576 -12 244 255 134 33 chr4 7931981 7932144 -176356518 - MIR3 SINE MIR -69 193 15 1477 206 73 42 chr4 7932323 7932496 -176356166 + MLT1C LTR MaLR 1 167 -300 2220 112 0 0 chr4 7932496 7932783 -176355879 + AluSx SINE Alu 19 305 -7 1477 206 73 42 chr4 7932783 7933060 -176355602 + MLT1C LTR MaLR 167 465 -2 412 265 90 50 chr4 7933982 7934182 -176354480 - MIR SINE MIR -49 213 6 244 365 47 31 chr4 7934388 7934580 -176354082 - L3 LINE CR1 -21 1556 1362 199 333 171 0 chr4 7935593 7935710 -176352952 + L2 LINE L2 2906 3042 -230 1917 149 40 7 chr4 7937249 7937551 -176351111 + AluJb SINE Alu 1 312 0 308 172 20 30 chr4 7937555 7937654 -176351008 + GA-rich Low_complexity Low_complexity 3 100 0 625 176 12 24 chr4 7937682 7937852 -176350810 + GA-rich Low_complexity Low_complexity 3 170 0 339 130 0 0 chr4 7937871 7937925 -176350737 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 293 303 20 0 chr4 7938210 7938309 -176350353 - L1ME LINE L1 -430 5691 5591 642 289 77 37 chr4 7938325 7938674 -176349988 - L2 LINE L2 -26 3287 2925 264 325 95 5 chr4 7938746 7938946 -176349716 - L1ME LINE L1 -2336 5472 5255 2412 94 73 52 chr4 7939222 7939546 -176349116 - Tigger4(Zombi) DNA MER2_type 0 2731 2394 1577 204 18 0 chr4 7939546 7939830 -176348832 - AluJo SINE Alu -19 293 5 2412 94 73 52 chr4 7939830 7939932 -176348730 - Tigger4(Zombi) DNA MER2_type -337 2394 2296 1273 158 54 4 chr4 7939933 7940174 -176348488 - Tigger4(Zombi) DNA MER2_type -2477 254 2 2214 113 0 7 chr4 7940687 7940980 -176347682 + AluSq SINE Alu 2 292 -21 207 139 0 0 chr4 7940980 7941016 -176347646 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 * 1121 95 17 20 chr4 7941010 7941306 -176347356 + (GAAA)n Simple_repeat Simple_repeat 1 296 0 669 260 65 29 chr4 7941323 7941600 -176347062 - L1ME3 LINE L1 -133 6098 5812 1040 291 68 50 chr4 7941652 7942406 -176346256 - L1ME3 LINE L1 -4064 2332 1566 287 241 23 0 chr4 7942431 7942518 -176346144 - L1ME LINE L1 -649 5590 5502 4691 261 82 29 chr4 7942660 7943777 -176344885 - L1MB7 LINE L1 -75 6109 5052 185 0 40 0 chr4 7943777 7943802 -176344860 + (TG)n Simple_repeat Simple_repeat 2 27 0 4691 261 82 29 chr4 7943802 7944122 -176344540 - L1MB7 LINE L1 -1132 5052 4750 2224 99 6 51 chr4 7944122 7944435 -176344227 + AluSx SINE Alu 1 299 -13 4691 261 82 29 chr4 7944435 7944796 -176343866 - L1MB7 LINE L1 -1434 4750 4409 1515 196 58 52 chr4 7944796 7945159 -176343503 + MLT1A1 LTR MaLR 1 365 0 4691 261 82 29 chr4 7945159 7945236 -176343426 - L1MB7 LINE L1 -1775 4409 4338 2295 70 0 0 chr4 7945236 7945508 -176343154 - AluY SINE Alu -1 310 39 185 0 40 0 chr4 7945514 7945539 -176343123 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 4691 261 82 29 chr4 7945539 7946648 -176342014 - L1MB7 LINE L1 -1850 4334 2957 1133 266 115 9 chr4 7946682 7947133 -176341529 - L1MB7 LINE L1 -3464 2682 2184 202 286 0 0 chr4 7947863 7947912 -176340750 + L2 LINE L2 3239 3287 -26 341 93 19 0 chr4 7949032 7949086 -176339576 + (TC)n Simple_repeat Simple_repeat 1 55 0 2101 156 9 69 chr4 7949893 7950328 -176338334 + MLT2D LTR ERVL 1 409 -5 232 287 23 23 chr4 7950331 7950418 -176338244 + MIR SINE MIR 106 192 -70 2443 173 34 30 chr4 7951193 7951640 -176337022 + L1MC3 LINE L1 6363 6814 -971 2470 73 0 3 chr4 7951640 7951941 -176336721 - AluY SINE Alu -4 307 8 2443 173 34 30 chr4 7951941 7951997 -176336665 + L1MC3 LINE L1 6814 6868 -917 1900 169 67 3 chr4 7952621 7952982 -176335680 + MLT1B LTR MaLR 7 390 0 234 274 38 28 chr4 7952982 7953088 -176335574 + MIR3 SINE MIR 91 197 -11 415 276 72 17 chr4 7953148 7953329 -176335333 - MIR SINE MIR -32 230 40 205 67 0 111 chr4 7953390 7953435 -176335227 + (CCCCAG)n Simple_repeat Simple_repeat 3 42 0 379 312 26 69 chr4 7953984 7954215 -176334447 - MIR SINE MIR -32 230 10 1124 118 0 12 chr4 7954429 7954598 -176334064 + MER4B LTR ERV1 3 169 -441 730 272 170 8 chr4 7954614 7954978 -176333684 + MER57B LTR ERV1 12 434 0 273 301 48 10 chr4 7954978 7955081 -176333581 - MIR SINE MIR -115 147 41 343 181 371 9 chr4 7955659 7955775 -176332887 - MER5A DNA MER1_type -22 167 10 303 278 81 40 chr4 7955839 7956012 -176332650 - MER5A DNA MER1_type -3 186 7 351 228 76 0 chr4 7956048 7956140 -176332522 - MIR SINE MIR -91 171 73 377 312 40 29 chr4 7956278 7956451 -176332211 + L2 LINE L2 3139 3313 0 466 344 36 0 chr4 7956471 7956663 -176331999 - MIR SINE MIR -10 252 54 338 312 160 8 chr4 7956655 7956918 -176331744 - L2 LINE L2 -1121 2193 1891 * 2159 111 33 13 chr4 7957642 7957948 -176330714 + AluSx SINE Alu 1 312 0 272 242 100 25 chr4 7958001 7958121 -176330541 - L2 LINE L2 -1 3271 3143 182 311 97 10 chr4 7959248 7959351 -176329311 - L2 LINE L2 -85 3228 3117 857 176 35 0 chr4 7959459 7959629 -176329033 - MER45A DNA AcHobo 0 178 3 8744 40 2 7 chr4 7959721 7960797 -176327865 - MER11C LTR ERVK 0 1071 1 753 287 163 23 chr4 7961305 7961748 -176326914 + MLT1D LTR MaLR 1 505 0 2343 82 6 19 chr4 7961777 7962094 -176326568 + AluSp SINE Alu 1 313 0 299 327 8 9 chr4 7962302 7962423 -176326239 - MIR SINE MIR -70 138 30 341 317 35 64 chr4 7962817 7963019 -176325643 + L1ME LINE L1 5592 5787 -334 206 330 32 0 chr4 7963336 7963430 -176325232 + MIR SINE MIR 154 250 -12 2331 109 3 0 chr4 7963436 7963738 -176324924 + AluSx SINE Alu 1 303 -9 236 175 0 0 chr4 7963989 7964029 -176324633 + L1ME LINE L1 5725 5764 -357 496 281 36 12 chr4 7964243 7964410 -176324252 - Charlie8 DNA MER1_type -2246 171 1 218 197 15 45 chr4 7964472 7964538 -176324124 + (TATATG)n Simple_repeat Simple_repeat 5 68 0 1954 127 67 0 chr4 7964583 7964866 -176323796 + AluSx SINE Alu 1 302 -10 939 251 8 16 chr4 7965288 7965531 -176323131 + MIR SINE MIR 21 261 -1 1806 170 3 13 chr4 7966059 7966365 -176322297 + AluJo SINE Alu 1 303 -9 208 293 0 0 chr4 7966570 7966628 -176322034 + MIR SINE MIR 19 76 -132 240 196 92 2 chr4 7967477 7967554 -176321108 - MIR SINE MIR -63 145 63 203 204 37 0 chr4 7968056 7968110 -176320552 + (CA)n Simple_repeat Simple_repeat 2 57 0 327 365 30 30 chr4 7968214 7968414 -176320248 - L1MCa LINE L1 -4317 2290 2091 518 296 70 58 chr4 7968424 7969227 -176319435 - L1MCa LINE L1 -4573 2034 1024 270 277 8 40 chr4 7969275 7969435 -176319227 + C-rich Low_complexity Low_complexity 1 154 0 221 278 8 48 chr4 7969625 7969751 -176318911 + CT-rich Low_complexity Low_complexity 2 122 0 2492 68 0 34 chr4 7970019 7970341 -176318321 - AluY SINE Alu 0 311 1 1683 137 91 4 chr4 7970716 7970979 -176317683 + AluJb SINE Alu 1 286 -26 2554 86 0 3 chr4 7971335 7971648 -176317014 - AluSx SINE Alu 0 312 1 263 254 160 41 chr4 7971859 7972028 -176316634 + MIR3 SINE MIR 3 191 -17 209 253 209 0 chr4 7972323 7972414 -176316248 - MIR SINE MIR -63 145 36 196 330 70 51 chr4 7973214 7973487 -176315175 + L2 LINE L2 2994 3271 -1 289 234 70 16 chr4 7973529 7973657 -176315005 - MIR3 SINE MIR -71 137 3 259 303 65 45 chr4 7973913 7974068 -176314594 - MIR3 SINE MIR -37 171 14 2450 75 7 0 chr4 7974202 7974496 -176314166 + AluSc SINE Alu 1 296 -13 255 276 20 51 chr4 7976793 7976891 -176311771 + MIR SINE MIR 160 254 -8 411 380 22 11 chr4 7977384 7977568 -176311094 - MIR SINE MIR -70 192 7 259 330 43 27 chr4 7977820 7978005 -176310657 - L2 LINE L2 -221 3051 2864 370 336 0 15 chr4 7978204 7978341 -176310321 - L2 LINE L2 -189 3083 2949 303 297 55 21 chr4 7979285 7979430 -176309232 + L1ME LINE L1 5592 5741 -380 2285 108 10 3 chr4 7979557 7979864 -176308798 + AluSc SINE Alu 1 309 0 457 311 79 6 chr4 7980064 7980241 -176308421 - MIR SINE MIR -63 199 10 228 313 15 0 chr4 7980623 7980690 -176307972 + L2 LINE L2 3201 3268 -4 866 264 35 9 chr4 7981202 7981429 -176307233 + MIR SINE MIR 27 259 -3 266 273 13 0 chr4 7981430 7981507 -176307155 + MER116 DNA Mariner 2 79 -1 1362 126 0 0 chr4 7981528 7981710 -176306952 - AluSx SINE Alu -19 293 112 940 81 0 0 chr4 7981865 7981976 -176306686 - AluSx SINE Alu -190 123 13 185 384 73 33 chr4 7982984 7983135 -176305527 + MIR SINE MIR 106 262 0 1092 176 39 5 chr4 7983745 7983950 -176304712 + MER20 DNA MER1_type 1 212 -7 209 354 135 25 chr4 7984134 7984453 -176304209 - L2 LINE L2 -1 3271 2918 360 206 63 48 chr4 7984871 7984997 -176303665 - L1MD3 LINE L1 -15 7980 7853 3287 169 29 23 chr4 7985409 7986111 -176302551 - L1MB3 LINE L1 0 6183 5478 1107 261 41 0 chr4 7986139 7986407 -176302255 - MLT1A1 LTR MaLR -4 361 83 198 0 0 0 chr4 7986546 7986568 -176302094 + (AGCTG)n Simple_repeat Simple_repeat 3 24 0 1011 173 108 124 chr4 7986875 7987122 -176301540 - MLT1A1 LTR MaLR 0 365 124 2051 157 13 0 chr4 7987122 7987428 -176301234 - AluJo SINE Alu 0 312 3 1011 173 108 124 chr4 7987428 7987551 -176301111 - MLT1A1 LTR MaLR -241 124 1 232 343 112 12 chr4 7987574 7987825 -176300837 + L2 LINE L2 2970 3245 -27 198 0 0 0 chr4 7987835 7987857 -176300805 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 396 287 115 6 chr4 7988536 7988710 -176299952 + MIR SINE MIR 70 262 0 203 226 113 0 chr4 7989258 7989311 -176299351 - L2 LINE L2 -40 3232 3174 677 248 26 9 chr4 7989311 7989527 -176299135 + MIR SINE MIR 14 235 -27 194 230 40 27 chr4 7990300 7990374 -176298288 - L2 LINE L2 -8 3264 3190 1170 121 11 0 chr4 7990503 7990677 -176297985 - THE1C LTR MaLR 0 375 200 1067 101 0 0 chr4 7990834 7990982 -176297680 - THE1C LTR MaLR -226 149 2 1803 91 0 13 chr4 7991450 7991701 -176296961 + AluSx SINE Alu 58 305 0 304 116 0 163 chr4 7991706 7991741 -176296921 - L1ME4a LINE L1 -1 6120 6105 2219 128 0 0 chr4 7991741 7992045 -176296617 + AluSx SINE Alu 1 304 -8 304 116 0 163 chr4 7992045 7992095 -176296567 - L1ME4a LINE L1 -16 6105 6049 255 250 18 36 chr4 7992172 7992284 -176296378 + (TCTA)n Simple_repeat Simple_repeat 4 113 0 192 163 0 0 chr4 7992286 7992329 -176296333 + GA-rich Low_complexity Low_complexity 2 44 0 234 293 13 0 chr4 7992376 7992451 -176296211 - L1ME4a LINE L1 -258 5863 5788 640 122 0 0 chr4 7992489 7992601 -176296061 - AluSx SINE Alu 0 305 194 1111 106 0 0 chr4 7992602 7992743 -176295919 - AluSx SINE Alu -172 141 1 278 349 108 5 chr4 7992927 7993122 -176295540 + MIR SINE MIR 14 228 -34 193 254 15 30 chr4 7993720 7993787 -176294875 + MIR SINE MIR 81 146 -62 185 324 45 18 chr4 7994195 7994306 -176294356 - MIR3 SINE MIR -92 116 3 364 296 113 31 chr4 7994414 7994573 -176294089 + MIR3 SINE MIR 15 186 -22 2123 120 0 7 chr4 7994764 7995055 -176293607 - AluJb SINE Alu -23 289 1 291 256 26 13 chr4 7995093 7995201 -176293461 + MIR SINE MIR 38 140 -68 228 258 16 16 chr4 7995716 7995778 -176292884 + L2 LINE L2 3191 3252 -20 254 289 72 0 chr4 7996509 7996592 -176292070 + MIR SINE MIR 32 120 -142 181 282 100 27 chr4 7997158 7997268 -176291394 - MIR SINE MIR -68 140 23 469 276 73 55 chr4 7997621 7997718 -176290944 + L1MC4 LINE L1 7685 7779 -263 273 57 0 0 chr4 7997718 7997753 -176290909 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1574 124 128 23 chr4 7997753 7998011 -176290651 - AluSx SINE Alu -27 285 1 469 276 73 55 chr4 7998011 7998256 -176290406 + L1MC4 LINE L1 7778 8034 -8 194 250 62 0 chr4 7998778 7998842 -176289820 + L2 LINE L2 2994 3061 -211 524 168 0 9 chr4 8000325 8000432 -176288230 + (TGG)n Simple_repeat Simple_repeat 1 106 0 648 109 79 0 chr4 8000539 8000675 -176287987 + AluSg/x SINE Alu 171 314 0 230 236 18 0 chr4 8000676 8000731 -176287931 + L1ME4a LINE L1 5607 5662 -459 180 77 0 0 chr4 8000983 8001009 -176287653 + (TATG)n Simple_repeat Simple_repeat 3 28 0 332 324 91 17 chr4 8001161 8001337 -176287325 + L1ME4a LINE L1 5930 6118 -3 1942 127 0 39 chr4 8001490 8001807 -176286855 - AluSx SINE Alu 0 316 11 934 192 315 45 chr4 8001960 8002335 -176286327 - L1MD2 LINE L1 -22 6337 5862 224 366 142 6 chr4 8002524 8002707 -176285955 - MIR SINE MIR -17 245 38 341 293 34 27 chr4 8002723 8002870 -176285792 - MIR3 SINE MIR -58 150 3 507 254 154 29 chr4 8002920 8003041 -176285621 + MIR SINE MIR 4 109 -153 2264 115 7 0 chr4 8003041 8003345 -176285317 - AluSx SINE Alu -6 306 1 507 254 154 29 chr4 8003345 8003455 -176285207 + MIR SINE MIR 109 262 0 293 239 99 0 chr4 8003477 8003548 -176285114 + MIR SINE MIR 31 108 -154 1915 157 40 0 chr4 8003577 8003877 -176284785 + AluJb SINE Alu 1 312 0 397 318 163 25 chr4 8004343 8004472 -176284190 + L2 LINE L2 2920 3030 -242 1490 189 9 60 chr4 8004472 8004790 -176283872 - AluJo SINE Alu -10 302 1 397 318 163 25 chr4 8004790 8004937 -176283725 + L2 LINE L2 3030 3234 -38 1045 216 110 49 chr4 8005301 8005709 -176282953 + MLT1C LTR MaLR 25 463 -4 442 290 97 5 chr4 8005716 8005902 -176282760 - MIR SINE MIR -57 205 3 259 207 52 0 chr4 8006001 8006059 -176282603 - L3 LINE CR1 -182 1395 1335 376 269 19 0 chr4 8006308 8006416 -176282246 + MER69 DNA AcHobo 64 173 -1053 * 1909 163 67 0 chr4 8006412 8006768 -176281894 - MLT1B LTR MaLR -10 380 1 567 259 56 16 chr4 8006769 8007066 -176281596 + MER69 DNA AcHobo 166 528 -1998 184 265 60 99 chr4 8007152 8007303 -176281359 + MER5A DNA MER1_type 38 182 -7 1327 229 81 28 chr4 8007388 8007894 -176280768 + MER69 DNA AcHobo 1989 2521 -5 357 292 119 69 chr4 8007901 8008002 -176280660 + MLT1J LTR MaLR 16 111 -400 2234 128 0 0 chr4 8008002 8008299 -176280363 + AluSx SINE Alu 1 297 -15 357 292 119 69 chr4 8008299 8008660 -176280002 + MLT1J LTR MaLR 111 501 -10 1977 186 13 55 chr4 8008674 8009132 -176279530 - MLT1C LTR MaLR -23 444 6 801 254 118 16 chr4 8009397 8009712 -176278950 + MLT1I LTR MaLR 63 409 0 466 250 16 16 chr4 8009955 8010083 -176278579 + L2 LINE L2 3180 3307 -6 194 318 18 36 chr4 8010208 8010318 -176278344 + MIR SINE MIR 41 148 -114 194 0 39 0 chr4 8010636 8010662 -176278000 + (CGGGGG)n Simple_repeat Simple_repeat 3 29 0 188 289 0 0 chr4 8011787 8011839 -176276823 + L3 LINE CR1 1022 1073 -504 393 298 140 0 chr4 8011839 8012017 -176276645 + L3 LINE CR1 1333 1535 -42 392 231 196 7 chr4 8012529 8012672 -176275990 - MER5A DNA MER1_type -6 183 14 284 257 57 19 chr4 8012918 8013023 -176275639 + LTR16C LTR ERVL 353 461 -30 650 300 23 9 chr4 8013583 8013803 -176274859 + MIR SINE MIR 21 243 -19 1007 231 5 0 chr4 8013880 8014083 -176274579 - MER58A DNA MER1_type 0 224 21 410 303 130 35 chr4 8015691 8015975 -176272687 + L2 LINE L2 3003 3313 0 282 295 49 25 chr4 8016315 8016437 -176272225 + MIR SINE MIR 60 184 -78 250 214 60 86 chr4 8016464 8016581 -176272081 + L2 LINE L2 3016 3129 -143 247 166 33 44 chr4 8016633 8016814 -176271848 + (CA)n Simple_repeat Simple_repeat 2 180 0 194 191 43 21 chr4 8017489 8017536 -176271126 + MIR3 SINE MIR 114 161 -47 617 242 47 43 chr4 8017569 8017780 -176270882 - L1MB7 LINE L1 -14 6166 5953 448 243 96 0 chr4 8017887 8018064 -176270598 + MIR SINE MIR 50 243 -19 2215 207 48 95 chr4 8018257 8018948 -176269714 + L1MB8 LINE L1 5480 6136 -42 1657 180 25 3 chr4 8018948 8019266 -176269396 - AluJb SINE Alu 0 312 1 2215 207 48 95 chr4 8019266 8019308 -176269354 + L1MB8 LINE L1 6136 6178 0 234 305 195 0 chr4 8019991 8020109 -176268553 + L1ME LINE L1 5542 5682 -439 259 229 38 0 chr4 8021060 8021357 -176267305 + (CACCT)n Simple_repeat Simple_repeat 1 308 0 214 241 12 0 chr4 8021389 8021555 -176267107 + (CACCT)n Simple_repeat Simple_repeat 4 171 0 301 375 52 30 chr4 8021963 8022366 -176266296 - L2 LINE L2 -562 2752 2341 529 270 65 56 chr4 8022886 8023101 -176265561 - MIR SINE MIR -34 228 12 840 1206 2611 3672 chr4 8023394 8023428 -176265234 - MLT1D LTR MaLR 0 505 437 14081 127 47 8 chr4 8023428 8025553 -176263109 + Tigger1 DNA MER2_type 1 2227 -191 1838 103 38 75 chr4 8025553 8025873 -176262789 - AluSx SINE Alu 0 309 1 14081 127 47 8 chr4 8025873 8026073 -176262589 + Tigger1 DNA MER2_type 2227 2418 0 840 1206 2611 3672 chr4 8026073 8026483 -176262179 - MLT1D LTR MaLR -68 437 1 264 159 48 0 chr4 8027084 8027147 -176261515 + MIR SINE MIR 59 124 -138 326 322 34 27 chr4 8027238 8027384 -176261278 + MIR SINE MIR 116 262 0 531 242 48 0 chr4 8027754 8027878 -176260784 + MER45A DNA AcHobo 2 131 -47 3902 211 3 25 chr4 8028273 8028883 -176259779 + L1MB7 LINE L1 5352 5940 -244 1950 155 0 32 chr4 8028883 8029199 -176259463 + AluJb SINE Alu 1 306 -6 3902 211 3 25 chr4 8029199 8029439 -176259223 + L1MB7 LINE L1 5940 6184 0 1519 253 66 2 chr4 8029450 8029877 -176258785 + MLT1C LTR MaLR 6 459 -8 342 0 0 0 chr4 8029878 8029916 -176258746 + (TG)n Simple_repeat Simple_repeat 1 38 0 299 339 25 8 chr4 8030146 8030267 -176258395 + L2 LINE L2 3181 3303 -10 234 271 0 0 chr4 8031013 8031072 -176257590 + MIR SINE MIR 92 150 -112 181 274 68 14 chr4 8031970 8032043 -176256619 - MIR SINE MIR -73 135 59 627 282 35 10 chr4 8032189 8032391 -176256271 + MIR SINE MIR 44 250 -12 317 318 54 8 chr4 8032508 8032637 -176256025 - L2 LINE L2 -23 3249 3115 184 161 0 0 chr4 8033057 8033088 -176255574 + L2 LINE L2 3264 3294 -19 628 121 0 0 chr4 8033931 8034022 -176254640 - AluJb SINE Alu -23 289 199 443 74 0 158 chr4 8034123 8034218 -176254444 + MADE1 DNA Mariner 1 80 0 1200 223 57 38 chr4 8034906 8035273 -176253389 + MLT1A2 LTR MaLR 1 374 0 1360 146 10 5 chr4 8035289 8035511 -176253151 - AluJb SINE Alu 0 308 86 618 280 50 0 chr4 8035635 8035817 -176252845 + MIR SINE MIR 1 191 -71 789 200 87 20 chr4 8036002 8036197 -176252465 + MLT1J LTR MaLR 190 397 -114 509 268 153 10 chr4 8037243 8037452 -176251210 + MIR SINE MIR 24 262 0 349 255 10 31 chr4 8037589 8037687 -176250975 + MIR SINE MIR 97 192 -70 1510 200 31 7 chr4 8037764 8038054 -176250608 + AluJo SINE Alu 1 297 -15 212 330 29 19 chr4 8038123 8038226 -176250436 - MIR3 SINE MIR -14 194 91 330 272 57 40 chr4 8038416 8038714 -176249948 + L1M4 LINE L1 4744 5046 -1100 1422 272 50 75 chr4 8038995 8039542 -176249120 + L1MEd LINE L1 493 1012 -5193 649 222 0 0 chr4 8039542 8039694 -176248968 + FLAM_A SINE Alu 1 152 0 1422 272 50 75 chr4 8039694 8040014 -176248648 + L1MEd LINE L1 1012 1339 -4866 567 248 19 6 chr4 8040124 8040285 -176248377 + MER104 DNA Tc2 1 163 -17 228 217 24 24 chr4 8040310 8040393 -176248269 + HAL1 LINE L1 1490 1572 -935 1016 335 44 26 chr4 8040430 8041161 -176247501 + L1MEc LINE L1 107 850 -5546 348 231 23 95 chr4 8041155 8041376 -176247286 + L1MEc LINE L1 2838 3042 -3173 * 806 178 89 0 chr4 8041407 8041598 -176247064 - L1MB3 LINE L1 -143 6040 5833 362 296 86 39 chr4 8041755 8042162 -176246500 + L1MEd LINE L1 2093 2480 -3735 30 0 0 0 chr4 8043001 8043031 -176245631 + GC_rich Low_complexity Low_complexity 1 30 0 258 160 200 10 chr4 8044969 8045069 -176243593 + MIR SINE MIR 27 145 -117 323 281 144 14 chr4 8045157 8045303 -176243359 + MIR SINE MIR 24 188 -74 270 273 67 16 chr4 8045477 8045612 -176243050 + MIR SINE MIR 11 152 -56 2342 87 7 23 chr4 8045874 8046183 -176242479 - AluSq SINE Alu -9 304 1 244 111 0 0 chr4 8046515 8046551 -176242111 + MADE1 DNA Mariner 8 43 -37 763 220 48 0 chr4 8046820 8046988 -176241674 + MER58A DNA MER1_type 49 224 0 335 349 48 0 chr4 8047179 8047305 -176241357 - L1 LINE L1 -3309 2837 2706 542 193 16 0 chr4 8047326 8047464 -176241198 - L1MB4 LINE L1 -6 6177 6035 313 280 38 48 chr4 8047532 8047676 -176240986 + MIR SINE MIR 2 147 -62 1785 203 53 36 chr4 8048448 8048915 -176239747 - L1MB5 LINE L1 -6 6168 5694 193 386 47 0 chr4 8049182 8049309 -176239353 + L2 LINE L2 2882 3014 -258 2014 159 38 28 chr4 8049309 8049864 -176238798 - MLT2A2 LTR ERVL 0 554 1 326 256 195 46 chr4 8049866 8050128 -176238534 + L2 LINE L2 3013 3313 0 286 313 47 16 chr4 8050111 8050239 -176238423 + MIR SINE MIR 43 174 -88 * 987 195 56 53 chr4 8050420 8050522 -176238140 + MER33 DNA MER1_type 1 101 -2484 2334 88 0 0 chr4 8050522 8050841 -176237821 + AluSq SINE Alu 1 319 0 987 195 56 53 chr4 8050841 8051060 -176237602 + MER33 DNA MER1_type 101 324 0 343 237 4 24 chr4 8051120 8051221 -176237441 + MIR SINE MIR 61 162 -46 459 295 53 14 chr4 8052317 8052524 -176236138 + L1MA9 LINE L1 6041 6255 -57 464 274 79 70 chr4 8052881 8053209 -176235453 + L2 LINE L2 2928 3258 -14 191 261 67 60 chr4 8053221 8053355 -176235307 - L3 LINE CR1 -3 1574 1440 2653 217 18 36 chr4 8054800 8054990 -176233672 + L1MEc LINE L1 2140 2332 -3883 2151 154 25 3 chr4 8054990 8055347 -176233315 - MLT1A1 LTR MaLR 0 365 1 2653 217 18 36 chr4 8055347 8055625 -176233037 + L1MEc LINE L1 2332 2613 -3602 2017 159 0 7 chr4 8055625 8055927 -176232735 + AluJb SINE Alu 1 300 -12 2653 217 18 36 chr4 8055927 8056280 -176232382 + L1MEc LINE L1 2613 2905 -3310 607 253 27 32 chr4 8056974 8057095 -176231567 + MER5A DNA MER1_type 2 123 -66 2563 51 0 3 chr4 8057095 8057389 -176231273 - AluY SINE Alu -18 293 1 607 253 27 32 chr4 8057389 8057453 -176231209 + MER5A DNA MER1_type 123 186 -3 1892 226 72 53 chr4 8057477 8058020 -176230642 - MLT2B3 LTR ERVL 0 554 2 189 146 49 49 chr4 8058550 8058591 -176230071 + MIR SINE MIR 106 146 -62 2053 108 0 14 chr4 8059227 8059536 -176229126 - AluSx SINE Alu 0 312 24 1054 171 6 0 chr4 8259549 8259730 -176028932 + AluSg/x SINE Alu 130 311 -1 564 234 71 0 chr4 8259730 8259884 -176028778 + L1MB8 LINE L1 4535 4699 -1447 * 737 206 5 62 chr4 8259853 8260062 -176028600 + L1MB8 LINE L1 5933 6129 -49 1812 141 7 18 chr4 8260129 8260406 -176028256 - AluJb SINE Alu -34 278 5 25 31 0 0 chr4 8261601 8261633 -176027029 + GC_rich Low_complexity Low_complexity 1 32 0 243 216 0 88 chr4 8261760 8261885 -176026777 + G-rich Low_complexity Low_complexity 6 119 0 425 260 11 33 chr4 8261919 8262100 -176026562 + G-rich Low_complexity Low_complexity 3 179 0 369 272 18 64 chr4 8262120 8262532 -176026130 + G-rich Low_complexity Low_complexity 1 393 0 253 275 18 42 chr4 8262661 8262828 -176025834 + (GGGTG)n Simple_repeat Simple_repeat 3 165 0 409 300 146 35 chr4 8263205 8263492 -176025170 + L1MC3 LINE L1 7467 7785 0 2489 53 0 34 chr4 8263775 8264097 -176024565 - AluY SINE Alu 0 311 1 1723 99 110 58 chr4 8264099 8264240 -176024422 - AluSc SINE Alu -2 307 175 261 0 0 0 chr4 8264240 8264269 -176024393 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1888 112 22 0 chr4 8264273 8264540 -176024122 - AluSg SINE Alu -35 275 3 1723 99 110 58 chr4 8264540 8264685 -176023977 - AluSc SINE Alu -136 173 1 1240 86 145 68 chr4 8264687 8264830 -176023832 - AluSx SINE Alu -3 309 140 2070 106 0 3 chr4 8264830 8265113 -176023549 - AluSg SINE Alu -24 286 5 1240 86 145 68 chr4 8265113 8265203 -176023459 - AluSx SINE Alu -172 140 58 2227 100 10 0 chr4 8265232 8265541 -176023121 - AluSx SINE Alu 0 312 1 1947 69 102 4 chr4 8266116 8266390 -176022272 - AluY SINE Alu -10 301 1 568 300 40 4 chr4 8267477 8267704 -176020958 + MER90 LTR ERV1 30 264 -311 893 332 93 59 chr4 8268130 8268339 -176020323 - L1M4 LINE L1 -803 5343 5143 2081 113 0 17 chr4 8268339 8268641 -176020021 - AluSg SINE Alu -13 297 1 893 332 93 59 chr4 8268641 8269223 -176019439 - L1M4 LINE L1 -1003 5143 4525 2307 100 0 0 chr4 8269223 8269522 -176019140 + AluSq SINE Alu 1 299 -14 779 147 17 2 chr4 8269537 8269768 -176018894 + AluJo SINE Alu 8 299 -13 2339 80 13 10 chr4 8269801 8270113 -176018549 - AluSp SINE Alu 0 313 1 2364 86 0 3 chr4 8270113 8270416 -176018246 - AluSp SINE Alu -11 302 1 1782 147 42 0 chr4 8270450 8270736 -176017926 + AluSx SINE Alu 1 298 -14 2395 87 0 3 chr4 8270795 8271107 -176017555 - AluSx SINE Alu -1 311 1 424 352 100 18 chr4 8273104 8273445 -176015217 + L1M4 LINE L1 4622 4990 -1156 2179 93 7 7 chr4 8273448 8273748 -176014914 + AluSx SINE Alu 1 300 -12 1455 161 59 22 chr4 8273874 8273910 -176014752 - MER34B LTR ERV1 0 565 532 1950 125 14 0 chr4 8273910 8274221 -176014441 - AluSx SINE Alu 0 315 1 1455 161 59 22 chr4 8274221 8274505 -176014157 - MER34B LTR ERV1 -33 532 232 1800 146 58 48 chr4 8274506 8274884 -176013778 - MSTB LTR MaLR -1 425 44 533 138 0 0 chr4 8274998 8275085 -176013577 - MSTB LTR MaLR -339 87 1 521 194 46 0 chr4 8275085 8275193 -176013469 - MER34B LTR ERV1 -329 236 124 2730 234 57 34 chr4 8275193 8275892 -176012770 + L1M4 LINE L1 3877 4559 -1587 2201 99 7 0 chr4 8275892 8276184 -176012478 - AluSc SINE Alu -15 294 1 2730 234 57 34 chr4 8276184 8276294 -176012368 + L1M4 LINE L1 4559 4665 -1481 2164 113 23 0 chr4 8276294 8276594 -176012068 + AluSx SINE Alu 1 307 -5 2730 234 57 34 chr4 8276594 8276751 -176011911 + L1M4 LINE L1 4665 4866 -1280 4286 171 47 37 chr4 8276765 8277065 -176011597 - L1MB5 LINE L1 -17 6157 5861 2368 57 7 0 chr4 8277065 8277362 -176011300 - AluY SINE Alu -10 301 3 4286 171 47 37 chr4 8277362 8277722 -176010940 - L1MB5 LINE L1 -313 5861 5506 2415 68 13 0 chr4 8277722 8278029 -176010633 - AluY SINE Alu 0 311 1 4286 171 47 37 chr4 8278029 8278364 -176010298 - L1MB5 LINE L1 -668 5506 5153 2072 112 0 3 chr4 8278364 8278716 -176009946 - AluSq SINE Alu 0 351 1 4286 171 47 37 chr4 8278716 8278886 -176009776 - L1MB5 LINE L1 -1021 5153 4986 864 244 52 36 chr4 8278891 8279198 -176009464 + L1M4 LINE L1 4849 5160 -986 1010 114 14 123 chr4 8279741 8279952 -176008710 + AluSg/x SINE Alu 115 302 -8 1050 185 42 75 chr4 8279952 8280104 -176008558 - MLT1A1 LTR MaLR -66 299 161 2131 91 14 0 chr4 8280104 8280390 -176008272 - AluSx SINE Alu -22 290 1 1050 185 42 75 chr4 8280390 8280545 -176008117 - MLT1A1 LTR MaLR -204 161 2 2426 44 7 3 chr4 8280677 8280974 -176007688 + AluY SINE Alu 3 300 -11 223 122 73 0 chr4 8281247 8281288 -176007374 - MIR SINE MIR -56 152 109 390 349 48 26 chr4 8281752 8281941 -176006721 + MIR SINE MIR 51 243 -19 6229 93 12 3 chr4 8282512 8283360 -176005302 - LTR5 LTR ERVK 0 969 115 454 86 43 0 chr4 8283360 8283430 -176005232 - LTR5 LTR ERVK -896 73 1 347 228 11 33 chr4 8284887 8284979 -176003683 - MIR SINE MIR -114 148 59 182 335 52 29 chr4 8287442 8287615 -176001047 + L2 LINE L2 2932 3108 -164 753 241 201 25 chr4 8288742 8289095 -175999567 - MLT1C LTR MaLR 0 467 53 248 57 5 153 chr4 8293657 8293866 -175994796 + (CACCC)n Simple_repeat Simple_repeat 1 178 0 * 320 116 6 81 chr4 8293818 8293990 -175994672 + (CCCCCA)n Simple_repeat Simple_repeat 3 161 0 1357 120 0 0 chr4 8297617 8297808 -175990854 + AluSq SINE Alu 116 306 -7 3143 169 90 15 chr4 8297810 8298430 -175990232 - L1MB3 LINE L1 -23 6160 5483 2096 95 0 74 chr4 8298430 8298768 -175989894 - AluSq SINE Alu 0 313 1 3143 169 90 15 chr4 8298768 8298827 -175989835 - L1MB3 LINE L1 -700 5483 5430 288 0 0 0 chr4 8298850 8298882 -175989780 + (CA)n Simple_repeat Simple_repeat 2 33 0 249 242 15 0 chr4 8299077 8299143 -175989519 - L1ME3A LINE L1 -26 6144 6078 203 105 53 0 chr4 8299231 8299269 -175989393 + GA-rich Low_complexity Low_complexity 3 42 0 191 39 19 77 chr4 8299648 8299700 -175988962 + (CGGGG)n Simple_repeat Simple_repeat 1 49 0 28 86 0 0 chr4 8299911 8299981 -175988681 + GC_rich Low_complexity Low_complexity 1 70 0 327 89 30 0 chr4 8301174 8301242 -175987420 + Alu SINE Alu 1 48 -255 184 288 68 41 chr4 8401882 8401955 -175886707 - L2 LINE L2 -5 3267 3193 527 223 173 50 chr4 8402217 8402437 -175886225 - MIR SINE MIR -9 253 7 403 283 171 52 chr4 8403534 8403927 -175884735 - L1MC5 LINE L1 -73 7888 7441 1909 108 0 15 chr4 8403927 8404187 -175884475 - AluSx SINE Alu -2 310 55 403 283 171 52 chr4 8404187 8404213 -175884449 - L1MC5 LINE L1 -520 7441 7419 259 313 20 33 chr4 8404352 8404502 -175884160 + MIR SINE MIR 64 211 -51 473 216 124 27 chr4 8404862 8405047 -175883615 - MLT1I LTR MaLR -204 205 64 202 348 16 32 chr4 8405268 8405518 -175883144 - L2 LINE L2 -211 3061 2816 450 286 157 77 chr4 8405645 8405926 -175882736 - L1ME4a LINE L1 -7 6114 5857 1980 189 40 11 chr4 8405926 8406301 -175882361 - MLT1B LTR MaLR -4 386 1 450 286 157 77 chr4 8406301 8406529 -175882133 - L1ME4a LINE L1 -264 5857 5564 861 176 0 0 chr4 8406631 8406773 -175881889 - AluSg/x SINE Alu -15 297 156 1253 229 196 5 chr4 8407020 8407392 -175881270 + MLT1G1 LTR MaLR 151 593 -2 3392 190 45 39 chr4 8407736 8407827 -175880835 + Tigger6a DNA MER2_type 225 314 -1283 2227 146 16 11 chr4 8407827 8408190 -175880472 + MLT1A1 LTR MaLR 1 365 0 3392 190 45 39 chr4 8408190 8408762 -175879900 + Tigger6a DNA MER2_type 314 881 -716 2228 117 0 7 chr4 8408762 8409061 -175879601 + AluJo SINE Alu 1 297 -15 3392 190 45 39 chr4 8409061 8409208 -175879454 + Tigger6a DNA MER2_type 881 1036 -561 2039 133 3 3 chr4 8409208 8409509 -175879153 - AluSx SINE Alu -11 301 1 3392 190 45 39 chr4 8409509 8409558 -175879104 + Tigger6a DNA MER2_type 1036 1083 0 260 321 54 9 chr4 8410074 8410186 -175878476 - L1ME4a LINE L1 -30 6091 5975 352 263 59 59 chr4 8410201 8410353 -175878309 - L1ME4a LINE L1 -226 5895 5744 230 266 0 0 chr4 8411635 8411699 -175876963 - MIR SINE MIR -123 139 76 823 285 70 12 chr4 8411709 8412236 -175876426 - MLT1H1 LTR MaLR -12 543 1 243 125 0 0 chr4 8413880 8413920 -175874742 + MIR SINE MIR 107 146 -62 343 305 49 58 chr4 8415182 8415405 -175873257 - L2 LINE L2 -30 3242 3022 198 318 91 0 chr4 8415401 8415489 -175873173 - L2 LINE L2 -4 3309 3214 * 394 331 7 22 chr4 8416205 8416344 -175872318 - MIR SINE MIR -117 145 9 21 0 0 0 chr4 8416981 8417002 -175871660 + AT_rich Low_complexity Low_complexity 1 21 0 492 137 0 14 chr4 8418080 8418153 -175870509 - AluS SINE Alu -240 73 2 343 306 30 0 chr4 8418153 8418287 -175870375 + MIR SINE MIR 113 250 -12 248 322 11 0 chr4 8418627 8418714 -175869948 - MIR SINE MIR -132 130 43 189 0 0 0 chr4 8418894 8418915 -175869747 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 202 289 66 0 chr4 8419600 8419676 -175868986 + MIR SINE MIR 105 185 -77 310 339 48 0 chr4 8419862 8419986 -175868676 - MIR SINE MIR -44 218 89 427 269 9 99 chr4 8420243 8420455 -175868207 - MIR SINE MIR -45 217 25 827 188 7 7 chr4 8420693 8420863 -175867799 - FRAM SINE Alu 0 167 1 2014 137 0 13 chr4 8421214 8421528 -175867134 - AluJb SINE Alu 0 312 3 267 349 28 9 chr4 8421991 8422100 -175866562 + MIR SINE MIR 117 227 -35 405 338 25 6 chr4 8422706 8422866 -175865796 - MIR SINE MIR -80 182 20 196 300 33 0 chr4 8423440 8423500 -175865162 + MIR SINE MIR 92 153 -55 935 245 17 12 chr4 8423590 8423831 -175864831 + MIR SINE MIR 14 255 -7 910 306 43 10 chr4 8425247 8425639 -175863023 + LTR16C LTR ERVL 82 486 -5 329 314 51 22 chr4 8428928 8429065 -175859597 + MIR3 SINE MIR 64 204 -4 242 347 107 0 chr4 8429387 8429508 -175859154 - Charlie8 DNA MER1_type -2247 170 37 1030 206 55 32 chr4 8429560 8429778 -175858884 + MER58A DNA MER1_type 2 224 0 2198 173 8 6 chr4 8430173 8430537 -175858125 - MLT1A1 LTR MaLR 0 365 1 594 325 91 52 chr4 8430929 8431465 -175857197 + HAL1b LINE L1 82 384 -1033 538 253 70 54 chr4 8431486 8431727 -175856935 + L1MC4a LINE L1 5292 5536 -2272 2203 125 0 0 chr4 8431774 8432086 -175856576 + AluSx SINE Alu 1 312 0 446 302 85 0 chr4 8432104 8432316 -175856346 + L1MC4a LINE L1 5674 5903 -1905 795 278 75 4 chr4 8432529 8432770 -175855892 + MIR SINE MIR 4 261 -1 190 308 158 14 chr4 8432827 8432973 -175855689 - L2 LINE L2 -117 3155 2989 2354 127 48 17 chr4 8433215 8433631 -175855031 - Tigger2a DNA MER2_type -5 429 1 773 237 121 16 chr4 8433633 8433890 -175854772 + MER46C DNA MER2_type 26 309 -29 204 311 78 0 chr4 8434121 8434224 -175854438 - L2 LINE L2 -581 2733 2623 1503 186 130 6 chr4 8434306 8434628 -175854034 + MLT1A1 LTR MaLR 1 362 -3 403 323 43 12 chr4 8435072 8435233 -175853429 - MER63A DNA MER1_type -3 207 42 2252 103 0 0 chr4 8435481 8435792 -175852870 - AluSx SINE Alu -1 311 1 308 221 213 52 chr4 8436053 8436189 -175852473 + MIR SINE MIR 14 171 -91 206 246 49 0 chr4 8436431 8436492 -175852170 + MIR SINE MIR 58 121 -87 1205 229 5 0 chr4 8437236 8437459 -175851203 + MER58A DNA MER1_type 1 224 0 342 265 62 37 chr4 8437497 8437659 -175851003 + MIR SINE MIR 11 176 -86 257 258 61 0 chr4 8438431 8438497 -175850165 + MIR SINE MIR 123 192 -70 350 211 56 0 chr4 8439165 8439236 -175849426 - L2 LINE L2 -1 3271 3197 490 150 42 0 chr4 8440484 8440604 -175848058 + (CA)n Simple_repeat Simple_repeat 2 126 0 573 318 26 0 chr4 8441364 8441559 -175847103 - MIR SINE MIR -34 228 29 285 51 0 0 chr4 8442478 8442517 -175846145 + (CCCTAA)n Simple_repeat Simple_repeat 5 43 0 407 268 91 103 chr4 8442597 8442914 -175845748 + L2 LINE L2 2922 3235 -78 2194 112 6 6 chr4 8442914 8443226 -175845436 + AluSx SINE Alu 1 312 0 407 268 91 103 chr4 8443226 8443304 -175845358 + L2 LINE L2 3235 3312 -1 2642 111 16 5 chr4 8443564 8443950 -175844712 + MLT1B LTR MaLR 1 390 0 261 292 7 73 chr4 8443991 8444128 -175844534 - MIR SINE MIR -111 151 24 1462 217 119 14 chr4 8446419 8446788 -175841874 + MLT1C LTR MaLR 59 466 -1 352 198 49 0 chr4 8446878 8446959 -175841703 - MER58C DNA MER1_type -16 199 115 1889 108 0 34 chr4 8446960 8447255 -175841407 - AluSx SINE Alu 0 312 28 249 226 60 12 chr4 8447269 8447353 -175841309 - MER58 DNA MER1_type -70 145 58 237 247 22 56 chr4 8447512 8447601 -175841061 + L2 LINE L2 3185 3270 -2 372 293 67 30 chr4 8447952 8448116 -175840546 + MIR SINE MIR 15 184 -78 377 238 25 17 chr4 8448279 8448407 -175840255 - MIR SINE MIR -58 150 35 415 227 134 0 chr4 8450026 8450145 -175838517 + MIR SINE MIR 15 149 -113 196 370 16 8 chr4 8450231 8450358 -175838304 - L2 LINE L2 -882 2432 2305 652 298 93 0 chr4 8450428 8450686 -175837976 + L3 LINE CR1 1271 1552 -25 294 311 21 10 chr4 8451558 8451699 -175836963 - MIR SINE MIR -69 139 11 212 329 12 12 chr4 8451755 8451840 -175836822 + MIR SINE MIR 108 192 -70 402 21 0 0 chr4 8452278 8452325 -175836337 + (CA)n Simple_repeat Simple_repeat 2 48 0 227 293 40 10 chr4 8452541 8452640 -175836022 + MIR SINE MIR 34 135 -127 376 351 0 6 chr4 8453056 8453230 -175835432 + (TG)n Simple_repeat Simple_repeat 1 173 0 2119 151 11 3 chr4 8453343 8453694 -175834968 - MLT1A1 LTR MaLR 0 365 12 213 288 45 0 chr4 8453826 8453892 -175834770 + MIR SINE MIR 45 113 -95 247 354 27 4 chr4 8453963 8454120 -175834542 + MIR SINE MIR 84 246 -16 213 159 0 0 chr4 8454401 8454445 -175834217 - MIR SINE MIR -41 221 178 2488 65 0 0 chr4 8454544 8454851 -175833811 + AluY SINE Alu 1 307 -4 638 250 0 73 chr4 8455108 8455224 -175833438 + MIR SINE MIR 35 134 -128 1859 130 0 11 chr4 8455224 8455554 -175833108 + AluJb SINE Alu 1 327 0 638 250 0 73 chr4 8455554 8455628 -175833034 + MIR SINE MIR 134 212 -50 266 293 116 0 chr4 8456440 8456587 -175832075 - L2 LINE L2 -215 3057 2894 218 350 26 17 chr4 8456597 8456714 -175831948 + MIR SINE MIR 33 150 -58 249 337 123 6 chr4 8457643 8457806 -175830856 + MER5A DNA MER1_type 7 188 -1 1375 205 91 3 chr4 8458264 8458561 -175830101 - MER33 DNA MER1_type -1 323 1 2126 98 7 19 chr4 8458696 8459003 -175829659 + AluSx SINE Alu 1 303 -9 857 237 142 42 chr4 8459191 8459593 -175829069 - MLT1D LTR MaLR -16 451 31 1670 125 3 96 chr4 8459603 8459947 -175828715 - AluSx SINE Alu 0 312 1 218 343 0 0 chr4 8460264 8460337 -175828325 + MIR SINE MIR 180 252 -10 412 294 94 31 chr4 8461132 8461292 -175827370 + MIR SINE MIR 61 230 -32 576 327 25 15 chr4 8461324 8461526 -175827136 - MIR SINE MIR -23 239 36 199 245 147 39 chr4 8461704 8461806 -175826856 + MER5A DNA MER1_type 47 159 -30 300 255 36 31 chr4 8462330 8462456 -175826206 - MIR3 SINE MIR -114 94 10 2004 100 0 0 chr4 8462505 8462776 -175825886 - AluSx SINE Alu -2 310 40 306 336 97 26 chr4 8463612 8463838 -175824824 + L2 LINE L2 2994 3235 -37 268 178 27 14 chr4 8463865 8463938 -175824724 + GA-rich Low_complexity Low_complexity 1 74 0 630 283 5 56 chr4 8464297 8464495 -175824167 - MIR SINE MIR -69 193 6 1688 148 64 27 chr4 8465833 8466237 -175822425 - Charlie1 DNA MER1_type 0 2761 2343 271 262 0 0 chr4 8466244 8466305 -175822357 - Charlie1 DNA MER1_type -2700 61 1 2487 266 57 23 chr4 8467147 8468575 -175820087 - L1ME1 LINE L1 -26 6140 4665 522 251 95 6 chr4 8468587 8468766 -175819896 - MIR SINE MIR -59 203 9 377 241 0 0 chr4 8469346 8469425 -175819237 - MER63 DNA MER1_type -5 1057 979 354 245 23 23 chr4 8469451 8469614 -175819048 - MER63 DNA MER1_type -9 1679 39 283 348 18 9 chr4 8469671 8469783 -175818879 + MIR SINE MIR 108 220 -42 194 250 62 0 chr4 8469986 8470050 -175818612 + MIR SINE MIR 114 181 -81 373 366 52 0 chr4 8470933 8471105 -175817557 + L2 LINE L2 3092 3272 0 413 313 101 0 chr4 8471198 8471415 -175817247 - L2 LINE L2 -537 2777 2539 226 304 0 0 chr4 8471791 8471847 -175816815 - MIR SINE MIR -96 166 111 325 248 155 19 chr4 8472002 8472163 -175816499 - MIR SINE MIR 0 262 80 318 337 101 18 chr4 8472196 8472365 -175816297 - MER5A DNA MER1_type 0 189 7 1449 191 2 97 chr4 8472932 8473357 -175815305 + L1MB5 LINE L1 5790 6174 0 1018 282 133 16 chr4 8473651 8474161 -175814501 + L2 LINE L2 2747 3308 -5 1157 156 6 0 chr4 8474161 8474341 -175814321 - L1MB4 LINE L1 0 6180 6000 306 214 107 24 chr4 8474466 8474550 -175814112 - MIR SINE MIR -73 135 45 247 270 37 10 chr4 8475052 8475153 -175813509 - MIR3 SINE MIR -46 162 57 765 284 47 17 chr4 8476484 8476720 -175811942 + MIR SINE MIR 9 251 -11 346 286 20 82 chr4 8477185 8477332 -175811330 - MIR SINE MIR -71 191 54 1011 214 5 9 chr4 8477489 8477713 -175810949 - MLT1C LTR MaLR 0 467 245 356 105 0 0 chr4 8477719 8477776 -175810886 - Alu SINE Alu -242 57 1 891 235 28 12 chr4 8477790 8478037 -175810625 - MLT1C LTR MaLR -216 251 1 181 265 286 0 chr4 8478422 8478520 -175810142 + MIR SINE MIR 63 188 -74 2413 252 45 57 chr4 8478539 8478555 -175810107 - L1ME LINE L1 -4593 1487 1472 1988 109 29 29 chr4 8478555 8478867 -175809795 - AluSq SINE Alu -1 312 1 2413 252 45 57 chr4 8478867 8480350 -175808312 - L1ME LINE L1 -4608 1472 10 231 235 0 0 chr4 8480352 8480403 -175808259 + MIR SINE MIR 211 261 -1 2163 122 10 0 chr4 8480529 8480833 -175807829 + AluSx SINE Alu 1 307 -5 205 179 0 128 chr4 8480845 8480923 -175807739 - L2 LINE L2 -189 3083 3016 387 307 92 7 chr4 8481393 8481546 -175807116 - MIR SINE MIR -66 196 31 299 307 23 0 chr4 8481575 8481663 -175806999 + MIR SINE MIR 117 206 -56 257 250 50 75 chr4 8481790 8481820 -175806842 - L1ME4a LINE L1 -1 6120 6091 509 189 0 0 chr4 8481820 8481910 -175806752 + L1MA10 LINE L1 6243 6332 -2 257 250 50 75 chr4 8481910 8482039 -175806623 - L1ME4a LINE L1 -30 6091 5965 420 380 121 13 chr4 8482553 8483001 -175805661 - L2 LINE L2 -3 3310 2815 545 218 316 15 chr4 8483457 8483679 -175804983 - L2 LINE L2 -532 2782 2628 369 0 0 0 chr4 8483679 8483720 -175804942 + (TG)n Simple_repeat Simple_repeat 1 41 0 * 486 0 0 0 chr4 8483719 8483773 -175804889 + (GA)n Simple_repeat Simple_repeat 1 54 0 545 218 316 15 chr4 8483720 8483885 -175804777 - L2 LINE L2 -686 2628 2347 296 359 8 0 chr4 8484161 8484292 -175804370 - Charlie8 DNA MER1_type -2213 204 73 246 211 21 21 chr4 8486352 8486447 -175802215 + G-rich Low_complexity Low_complexity 3 97 0 317 295 74 58 chr4 8486537 8486727 -175801935 - MIR SINE MIR -55 207 15 264 358 47 0 chr4 8487419 8487567 -175801095 + MIR SINE MIR 87 241 -21 2176 101 0 13 chr4 8488715 8489022 -175799640 - AluSx SINE Alu -9 303 1 1843 149 3 10 chr4 8489650 8489946 -175798716 + AluJb SINE Alu 9 302 -10 190 365 12 12 chr4 8490024 8490109 -175798553 + MIR SINE MIR 44 128 -134 796 160 42 61 chr4 8490161 8490373 -175798289 - MLT2D LTR ERVL 0 414 207 283 339 85 12 chr4 8490659 8490824 -175797838 + MIR SINE MIR 36 212 -50 295 278 0 75 chr4 8490857 8490990 -175797672 - MIR SINE MIR -112 150 28 303 353 17 8 chr4 8491577 8491696 -175796966 - L2 LINE L2 -20 3252 3133 219 389 45 54 chr4 8491757 8491978 -175796684 + L2 LINE L2 2957 3175 -97 324 240 0 0 chr4 8492466 8492566 -175796096 + (CA)n Simple_repeat Simple_repeat 1 100 0 255 302 29 86 chr4 8492749 8492888 -175795774 - L2 LINE L2 0 3272 3142 240 282 69 23 chr4 8493014 8493145 -175795517 - MLT1J2 LTR MaLR -1 449 313 393 190 25 0 chr4 8493247 8493326 -175795336 - MLT1J LTR MaLR -328 183 103 282 300 0 0 chr4 8493428 8493498 -175795164 - MIR SINE MIR -120 142 73 1031 195 35 35 chr4 8494563 8494824 -175793838 - MIR SINE MIR 0 262 2 248 243 87 78 chr4 8495176 8495279 -175793383 + MIR SINE MIR 28 131 -131 283 270 70 0 chr4 8495876 8495976 -175792686 - MLT1K LTR MaLR -408 180 74 381 292 62 31 chr4 8496086 8496247 -175792415 - MIR3 SINE MIR -32 176 11 302 331 37 7 chr4 8496444 8496580 -175792082 - L2 LINE L2 -1 3271 3132 387 309 24 73 chr4 8496812 8497058 -175791604 + MER113 DNA MER1_type? 9 242 -279 597 258 36 36 chr4 8497067 8497261 -175791401 + MER3 DNA MER1_type 1 194 -15 241 232 211 11 chr4 8497907 8498002 -175790660 - L2 LINE L2 -3 3310 3197 547 240 223 26 chr4 8498073 8498302 -175790360 - L2 LINE L2 -2106 1208 935 221 369 70 16 chr4 8499405 8499592 -175789070 + L2 LINE L2 2645 2841 -473 209 345 82 73 chr4 8499652 8499980 -175788682 + L2 LINE L2 2939 3269 -3 197 382 20 20 chr4 8500214 8500316 -175788346 - L3 LINE CR1 -237 1340 1239 251 184 0 0 chr4 8501115 8501164 -175787498 + MIR SINE MIR 31 79 -129 212 333 14 0 chr4 8501184 8501256 -175787406 - L2 LINE L2 0 3272 3200 236 303 45 0 chr4 8501369 8501435 -175787227 + MER91A DNA MER1_type 128 196 0 198 328 160 8 chr4 8501488 8501619 -175787043 + L2 LINE L2 2496 2646 -668 557 330 15 15 chr4 8501626 8501823 -175786839 + MIR SINE MIR 35 231 -31 661 284 155 9 chr4 8501856 8502398 -175786264 + L2 LINE L2 2642 3294 -19 463 228 41 81 chr4 8502689 8502787 -175785875 - MER63A DNA MER1_type -1499 189 101 2375 80 0 3 chr4 8502787 8503099 -175785563 - AluY SINE Alu 0 311 1 463 228 41 81 chr4 8503099 8503197 -175785465 - MER63A DNA MER1_type -1587 101 1 830 257 4 69 chr4 8503354 8503599 -175785063 - MIR SINE MIR -32 230 2 266 327 30 0 chr4 8503677 8503778 -175784884 - MIR SINE MIR -72 190 87 401 380 81 9 chr4 8504803 8505024 -175783638 - MIR SINE MIR -5 257 21 1699 195 18 34 chr4 8505262 8505642 -175783020 + MLT1B LTR MaLR 1 374 -16 385 342 21 0 chr4 8506120 8506282 -175782380 + MIR SINE MIR 8 131 -77 23 54 0 0 chr4 8506778 8506815 -175781847 + AT_rich Low_complexity Low_complexity 1 37 0 235 138 0 0 chr4 8506815 8506873 -175781789 - Charlie5 DNA MER1_type -84 2528 2471 6502 53 4 5 chr4 8506897 8508458 -175780204 - L1PA6 LINE L1 -6 6148 4592 515 248 20 39 chr4 8508881 8509034 -175779628 + MER58B DNA MER1_type 192 341 0 261 307 100 7 chr4 8509194 8509334 -175779328 - MIR3 SINE MIR -49 159 7 254 284 86 9 chr4 8509397 8509513 -175779149 - MIR3 SINE MIR -77 131 7 300 336 41 0 chr4 8509552 8509674 -175778988 - MIR3 SINE MIR -49 159 33 695 313 48 4 chr4 8509705 8509932 -175778730 - MIR SINE MIR -12 250 14 288 298 132 3 chr4 8509931 8510105 -175778557 + MIR SINE MIR 18 208 -54 * 2225 107 3 10 chr4 8510377 8510687 -175777975 - AluSx SINE Alu -4 308 1 1280 27 0 0 chr4 8510864 8511013 -175777649 - L1PA2 LINE L1 0 6155 6007 492 31 0 0 chr4 8511013 8511078 -175777584 + L1PA2 LINE L1 5929 5993 -162 421 332 155 18 chr4 8511181 8511458 -175777204 - L2 LINE L2 0 3313 2999 205 313 12 24 chr4 8511596 8511679 -175776983 + MIR SINE MIR 30 111 -97 213 349 46 34 chr4 8511839 8512014 -175776648 - L2 LINE L2 -2 3270 3094 359 356 101 26 chr4 8512850 8513157 -175775505 - HAL1 LINE L1 -1231 1276 875 337 288 11 43 chr4 8513321 8513593 -175775069 + GA-rich Low_complexity Low_complexity 1 263 0 309 148 0 19 chr4 8513824 8513878 -175774784 - Alu SINE Alu -249 53 1 2417 87 0 0 chr4 8513967 8514276 -175774386 + AluSq SINE Alu 1 309 -4 1366 204 24 21 chr4 8514389 8514722 -175773940 - MLT1A1 LTR MaLR -31 334 1 357 268 42 65 chr4 8514731 8514833 -175773829 + L1ME4a LINE L1 5550 5648 -522 931 219 63 0 chr4 8514833 8515038 -175773624 + MER20 DNA MER1_type 2 219 0 357 268 42 65 chr4 8515038 8515103 -175773559 + L1ME4a LINE L1 5648 5713 -457 372 22 0 0 chr4 8515580 8515625 -175773037 + (TG)n Simple_repeat Simple_repeat 2 46 0 342 315 0 22 chr4 8516221 8516313 -175772349 + L1MC4 LINE L1 6614 6703 -1339 297 264 8 21 chr4 8516323 8516432 -175772230 + L1M3 LINE L1 5360 5468 -700 2273 76 0 48 chr4 8516529 8516844 -175771818 - AluSq SINE Alu -13 300 1 972 138 46 0 chr4 8516852 8517026 -175771636 + L1MA5A LINE L1 6112 6293 -4 1899 128 29 0 chr4 8517053 8517361 -175771301 + AluSx SINE Alu 1 316 0 180 77 0 0 chr4 8517669 8517695 -175770967 + (TATG)n Simple_repeat Simple_repeat 3 28 0 313 313 85 11 chr4 8517847 8518023 -175770639 + L1ME4a LINE L1 5930 6118 -3 1857 123 0 42 chr4 8518176 8518494 -175770168 - AluSx SINE Alu 0 316 11 823 192 315 45 chr4 8518647 8519022 -175769640 - L1MD2 LINE L1 -22 6337 5862 300 361 142 6 chr4 8519211 8519394 -175769268 - MIR SINE MIR -17 245 38 375 306 27 20 chr4 8519410 8519557 -175769105 - MIR3 SINE MIR -58 150 3 541 280 131 14 chr4 8519607 8519728 -175768934 + MIR SINE MIR 4 109 -153 2169 115 7 0 chr4 8519728 8520032 -175768630 - AluSx SINE Alu -6 306 1 541 280 131 14 chr4 8520032 8520142 -175768520 + MIR SINE MIR 109 262 0 311 239 99 0 chr4 8520164 8520235 -175768427 + MIR SINE MIR 31 108 -154 1853 153 40 0 chr4 8520264 8520564 -175768098 + AluJb SINE Alu 1 312 0 469 326 163 24 chr4 8521030 8521159 -175767503 + L2 LINE L2 2920 3030 -242 1428 188 9 59 chr4 8521159 8521479 -175767183 - AluJo SINE Alu -8 304 1 469 326 163 24 chr4 8521479 8521637 -175767025 + L2 LINE L2 3030 3247 -25 959 220 112 38 chr4 8521990 8522398 -175766264 + MLT1C LTR MaLR 25 463 -4 469 290 97 5 chr4 8522405 8522591 -175766071 - MIR SINE MIR -57 205 3 268 207 52 0 chr4 8522690 8522748 -175765914 - L3 LINE CR1 -182 1395 1335 362 269 19 0 chr4 8522997 8523105 -175765557 + MER69 DNA AcHobo 64 173 -2353 * 1803 163 67 0 chr4 8523101 8523457 -175765205 - MLT1B LTR MaLR -10 380 1 569 263 229 7 chr4 8523458 8523755 -175764907 + MER69 DNA AcHobo 166 528 -1998 221 265 60 99 chr4 8523841 8523992 -175764670 + MER5A DNA MER1_type 38 182 -7 1117 210 170 51 chr4 8525333 8525781 -175762881 - MLT1D LTR MaLR -4 501 1 213 302 0 0 chr4 8526195 8526248 -175762414 - MIR SINE MIR -61 147 95 1932 113 3 31 chr4 8527169 8527496 -175761166 - AluSx SINE Alu 0 319 1 295 313 52 0 chr4 8527700 8527796 -175760866 - MLT1I LTR MaLR -199 210 110 1168 147 66 0 chr4 8528622 8528819 -175759843 - AluSc SINE Alu -21 288 79 913 50 8 25 chr4 8528818 8528937 -175759725 - AluY SINE Alu -171 140 24 * 703 283 82 9 chr4 8529042 8529261 -175759401 - MIR SINE MIR 0 262 28 254 301 58 39 chr4 8529483 8529586 -175759076 + MIR SINE MIR 20 124 -138 353 246 112 39 chr4 8529627 8529806 -175758856 - MLT1K LTR MaLR -51 537 346 230 325 25 0 chr4 8530957 8531037 -175757625 + L2 LINE L2 3017 3098 -174 375 256 214 12 chr4 8531246 8531414 -175757248 - MIR SINE MIR -1 261 60 334 180 169 45 chr4 8531568 8531657 -175757005 + L2 LINE L2 3168 3267 -5 268 292 80 9 chr4 8532071 8532184 -175756478 - L2 LINE L2 -249 3064 2944 201 366 24 0 chr4 8532534 8532616 -175756046 - L2 LINE L2 -948 2366 2283 984 244 102 48 chr4 8532731 8533191 -175755471 - MLT1D LTR MaLR -20 485 1 407 368 35 26 chr4 8533529 8533757 -175754905 + L1ME4a LINE L1 5666 5895 -226 348 216 201 37 chr4 8533774 8533908 -175754754 + L1ME4a LINE L1 5962 6117 -4 259 337 83 0 chr4 8534551 8534756 -175753906 - L1M4 LINE L1 -2380 3766 3545 1441 142 150 11 chr4 8534797 8535057 -175753605 - AluSg SINE Alu -14 296 1 248 288 68 8 chr4 8535597 8535715 -175752947 - MIR SINE MIR -98 164 40 239 233 163 54 chr4 8536011 8536140 -175752522 - MIR SINE MIR 0 262 120 597 258 0 26 chr4 8536143 8536298 -175752364 - Tigger2 DNA MER2_type -10 2708 2558 471 216 234 0 chr4 8536302 8536372 -175752290 - Tigger2 DNA MER2_type -2509 209 157 459 92 0 0 chr4 8536372 8536437 -175752225 + (TG)n Simple_repeat Simple_repeat 2 66 0 471 216 234 0 chr4 8536437 8536533 -175752129 - Tigger2 DNA MER2_type -2561 157 4 1487 221 126 9 chr4 8536552 8536996 -175751666 - MLT1D LTR MaLR -9 496 1 344 224 82 31 chr4 8536997 8537095 -175751567 - MIR SINE MIR -140 122 20 2144 112 10 0 chr4 8537160 8537455 -175751207 - AluSx SINE Alu -10 302 5 665 269 123 19 chr4 8537600 8538013 -175750649 - L2 LINE L2 -412 2902 2447 260 203 16 16 chr4 8539595 8539659 -175749003 - MIR SINE MIR -63 145 82 187 270 52 52 chr4 8539873 8539988 -175748674 - L2 LINE L2 -1237 2077 1963 228 111 0 0 chr4 8540465 8540501 -175748161 + (TG)n Simple_repeat Simple_repeat 2 37 0 444 82 0 0 chr4 8541357 8541418 -175747244 + (TA)n Simple_repeat Simple_repeat 2 62 0 314 259 80 56 chr4 8541817 8541979 -175746683 - MIR SINE MIR -86 176 11 288 233 0 48 chr4 8542017 8542120 -175746542 - MER58B DNA MER1_type 0 341 244 532 237 10 23 chr4 8542703 8543002 -175745660 + GA-rich Low_complexity Low_complexity 1 295 0 300 209 30 30 chr4 8543018 8543152 -175745510 + GA-rich Low_complexity Low_complexity 2 135 0 382 204 33 39 chr4 8543190 8543371 -175745291 + GA-rich Low_complexity Low_complexity 1 180 0 245 233 0 17 chr4 8543384 8543444 -175745218 + GA-rich Low_complexity Low_complexity 4 62 0 216 167 0 0 chr4 8544311 8544347 -175744315 + C-rich Low_complexity Low_complexity 2 37 0 476 320 178 8 chr4 8544474 8544960 -175743702 + L2 LINE L2 2708 3286 -27 240 86 0 0 chr4 8544972 8545007 -175743655 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 203 244 110 0 chr4 8545861 8545943 -175742719 - MIR SINE MIR -95 113 39 262 313 43 26 chr4 8546049 8546164 -175742498 + MIR SINE MIR 49 165 -97 339 242 11 11 chr4 8547161 8547252 -175741410 - L2 LINE L2 -213 3059 2969 182 283 0 0 chr4 8548134 8548180 -175740482 - MIR SINE MIR -1 261 216 418 306 76 48 chr4 8548233 8548547 -175740115 - MLT1L LTR MaLR -77 538 216 328 307 143 32 chr4 8548646 8548835 -175739827 - MIR SINE MIR -31 231 22 204 311 44 78 chr4 8549234 8549341 -175739321 + L2 LINE L2 3036 3136 -177 1574 184 116 32 chr4 8549341 8549721 -175738941 - MLT2D LTR ERVL -2 412 1 204 311 44 78 chr4 8549721 8549793 -175738869 + L2 LINE L2 3136 3209 -104 539 229 67 14 chr4 8550144 8550317 -175738345 - MIR SINE MIR -64 144 9 321 293 0 9 chr4 8553917 8554023 -175734639 - MLT1K LTR MaLR -322 266 162 734 100 0 0 chr4 8554066 8554166 -175734496 - AluSq SINE Alu -61 252 153 233 246 33 0 chr4 8554925 8554986 -175733676 - MIR SINE MIR -191 71 9 2248 91 3 0 chr4 8555615 8555926 -175732736 - AluSq SINE Alu 0 312 1 1315 148 71 97 chr4 8556110 8556420 -175732242 - AluJo SINE Alu -8 304 3 247 290 0 14 chr4 8557475 8557544 -175731118 - L2 LINE L2 -2 3270 3203 232 280 80 0 chr4 8557674 8557749 -175730913 - L2 LINE L2 0 3272 3192 195 69 0 0 chr4 8558399 8558428 -175730234 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 228 35 0 0 chr4 8559298 8559327 -175729335 + (TGG)n Simple_repeat Simple_repeat 1 29 0 360 364 74 12 chr4 8559560 8559802 -175728860 + MIR SINE MIR 2 258 -4 267 254 30 0 chr4 8559878 8559945 -175728717 - MIR SINE MIR -125 137 69 371 268 16 57 chr4 8560490 8560613 -175728049 - MIR SINE MIR -95 167 50 1394 228 23 49 chr4 8560721 8561151 -175727511 + MLT1D LTR MaLR 85 503 -2 631 329 18 18 chr4 8561852 8562074 -175726588 - MIR SINE MIR -36 226 5 183 328 66 0 chr4 8562276 8562337 -175726325 + L2 LINE L2 3166 3230 -42 440 307 33 0 chr4 8562465 8562677 -175725985 + HAL1 LINE L1 111 329 -2178 902 271 135 67 chr4 8562843 8562937 -175725725 + HAL1 LINE L1 643 729 -1778 1988 133 7 7 chr4 8562937 8563239 -175725423 + AluSx SINE Alu 1 302 -10 902 271 135 67 chr4 8563239 8563704 -175724958 + HAL1 LINE L1 729 1161 -1346 2173 81 3 3 chr4 8563704 8564026 -175724636 + AluSx SINE Alu 1 322 0 902 271 135 67 chr4 8564026 8564414 -175724248 + HAL1 LINE L1 1161 1656 -851 264 214 0 51 chr4 8564414 8564523 -175724139 - MLT1H LTR MaLR 0 549 447 2674 197 23 49 chr4 8564660 8564987 -175723675 - MER41C LTR ERV1 0 554 247 2104 100 3 29 chr4 8564987 8565298 -175723364 - AluSx SINE Alu -9 303 1 2674 197 23 49 chr4 8565298 8565539 -175723123 - MER41C LTR ERV1 -307 247 1 288 216 95 0 chr4 8565737 8565811 -175722851 + HAL1 LINE L1 1682 1762 -745 378 348 84 31 chr4 8565901 8566023 -175722639 + MLT1J LTR MaLR 157 271 -240 3237 158 18 125 chr4 8566023 8566222 -175722440 - LTR8 LTR ERV1 0 691 472 2123 115 0 0 chr4 8566222 8566508 -175722154 - AluSx SINE Alu -26 286 1 3237 158 18 125 chr4 8566508 8567082 -175721580 - LTR8 LTR ERV1 -219 472 1 378 348 84 31 chr4 8567082 8567281 -175721381 + MLT1J LTR MaLR 271 495 -16 1253 286 77 31 chr4 8567300 8567618 -175721044 + HAL1 LINE L1 1750 2052 -455 1940 104 93 0 chr4 8567618 8567898 -175720764 + AluSx SINE Alu 1 306 -6 1253 286 77 31 chr4 8567898 8568232 -175720430 + HAL1 LINE L1 2052 2432 -75 4453 64 7 0 chr4 8568281 8568831 -175719831 - MER41A LTR ERV1 0 554 1 240 209 0 0 chr4 8569095 8569181 -175719481 + (TGAA)n Simple_repeat Simple_repeat 2 87 0 291 312 29 2 chr4 8569224 8569335 -175719327 - MIR SINE MIR -62 146 69 567 278 96 5 chr4 8569343 8569530 -175719132 - MIR SINE MIR -12 250 47 2015 208 21 68 chr4 8569699 8570272 -175718390 - MLT2B3 LTR ERVL -8 546 1 1936 139 76 80 chr4 8570482 8571086 -175717576 + pTR5 LTR ERV1 743 1344 -1094 3209 159 270 1 chr4 8571102 8571750 -175716912 + LTR12 LTR ERV1 5 826 0 512 271 80 24 chr4 8572377 8572794 -175715868 - MLT1F1 LTR MaLR -30 537 10 206 337 58 0 chr4 8572808 8572894 -175715768 + MIR SINE MIR 94 184 -78 1203 205 91 18 chr4 8573800 8574141 -175714521 - MLT1D LTR MaLR -139 366 1 329 333 119 6 chr4 8574278 8574446 -175714216 + L2 LINE L2 3127 3313 0 424 136 45 0 chr4 8575174 8575260 -175713402 + AluJb SINE Alu 213 301 0 306 305 80 53 chr4 8575272 8575423 -175713239 - MIR3 SINE MIR -31 177 23 214 274 57 57 chr4 8575544 8575668 -175712994 + MIR SINE MIR 59 182 -80 313 217 24 6 chr4 8580093 8580259 -175708403 + (CA)n Simple_repeat Simple_repeat 2 170 0 249 222 35 0 chr4 8580288 8580459 -175708203 + (CA)n Simple_repeat Simple_repeat 2 178 0 237 263 17 0 chr4 8580485 8580660 -175708002 + (CA)n Simple_repeat Simple_repeat 2 179 0 1526 179 10 23 chr4 8582948 8583250 -175705412 + AluJb SINE Alu 1 298 -14 190 330 142 34 chr4 8585976 8586209 -175702453 - L2 LINE L2 -784 2530 2273 494 300 184 10 chr4 8586387 8586697 -175701965 - L2 LINE L2 -1220 2094 1731 341 295 9 9 chr4 8587252 8587357 -175701305 - MIR3 SINE MIR -46 162 58 224 274 8 48 chr4 8587664 8587788 -175700874 + L2 LINE L2 2925 3043 -229 290 286 31 0 chr4 8589150 8589248 -175699414 - MIR SINE MIR -60 148 48 301 200 62 0 chr4 8589484 8589549 -175699113 + L1ME4a LINE L1 6048 6116 -5 2043 154 0 0 chr4 8589837 8590148 -175698514 + AluSx SINE Alu 1 311 -1 328 282 105 0 chr4 8590148 8590272 -175698390 + L1ME4a LINE L1 5985 6121 0 747 207 59 12 chr4 8591502 8591671 -175696991 + MER58A DNA MER1_type 35 211 -13 254 239 0 0 chr4 8591682 8591728 -175696934 - MIR3 SINE MIR -51 157 112 2198 116 0 0 chr4 8591840 8592141 -175696521 - AluSx SINE Alu -11 301 1 1825 184 36 33 chr4 8593520 8593884 -175694778 - MLT1A1 LTR MaLR 0 365 1 2145 124 3 10 chr4 8595673 8595987 -175692675 - AluSq SINE Alu -1 312 1 239 233 70 35 chr4 8596207 8596293 -175692369 + MLT1K LTR MaLR 16 104 -484 912 267 137 37 chr4 8596296 8596727 -175691935 + MLT1K LTR MaLR 3 476 0 448 328 73 25 chr4 8600583 8600787 -175687875 + MIR SINE MIR 36 249 -13 223 242 71 50 chr4 8601432 8601531 -175687131 + MIR SINE MIR 31 131 -77 841 212 29 24 chr4 8603022 8603395 -175685267 + MLT1C LTR MaLR 51 466 -1 255 196 0 54 chr4 8603424 8603480 -175685182 + G-rich Low_complexity Low_complexity 2 54 0 326 271 28 19 chr4 8604019 8604126 -175684536 + MIR SINE MIR 39 146 -116 219 288 17 0 chr4 8605003 8605062 -175683600 - MIR SINE MIR -79 183 124 303 265 51 43 chr4 8605072 8605189 -175683473 - MIR SINE MIR -54 154 37 377 191 95 0 chr4 8605599 8605683 -175682979 + MIR SINE MIR 102 193 -69 2460 70 0 3 chr4 8605729 8606041 -175682621 + AluY SINE Alu 1 311 0 249 310 69 21 chr4 8607311 8607456 -175681206 + L1ME4a LINE L1 5968 6119 -2 306 309 57 0 chr4 8609142 8609265 -175679397 + MIR SINE MIR 60 189 -73 27 110 0 0 chr4 8609720 8609838 -175678824 + GC_rich Low_complexity Low_complexity 1 118 0 33 0 0 0 chr4 8610460 8610493 -175678169 + GC_rich Low_complexity Low_complexity 1 33 0 221 321 107 14 chr4 8611267 8611407 -175677255 - MIR SINE MIR -23 239 87 324 231 231 11 chr4 8611427 8611518 -175677144 - L1ME4a LINE L1 -21 6100 5990 328 394 45 10 chr4 8611754 8611952 -175676710 + HAL1 LINE L1 1046 1250 -1257 233 271 71 0 chr4 8612000 8612070 -175676592 + HAL1 LINE L1 1405 1479 -1028 213 121 0 0 chr4 8613385 8613418 -175675244 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 2126 118 0 6 chr4 8613629 8613942 -175674720 + AluSx SINE Alu 1 311 -1 181 347 13 0 chr4 8613957 8614032 -175674630 - L2 LINE L2 -13 3259 3184 746 207 179 50 chr4 8614098 8614466 -175674196 + MLT1D LTR MaLR 22 430 -37 1760 92 117 18 chr4 8614512 8614794 -175673868 + AluSp SINE Alu 1 310 -3 1767 196 0 3 chr4 8614805 8615183 -175673479 + AluJo SINE Alu 1 377 0 279 356 0 10 chr4 8615229 8615333 -175673329 + MER5A DNA MER1_type 84 186 -3 331 220 150 116 chr4 8615348 8615521 -175673141 + MER5A DNA MER1_type 3 181 -8 807 169 0 0 chr4 8615524 8615648 -175673014 + FLAM_A SINE Alu 8 131 -11 1423 162 113 19 chr4 8617164 8617430 -175671232 - AluJb SINE Alu -21 291 1 2497 216 58 21 chr4 8617442 8618024 -175670638 - L1MC1 LINE L1 -1 6332 5729 320 309 63 16 chr4 8618248 8618374 -175670288 - MIR SINE MIR -46 216 85 1694 158 3 58 chr4 8618585 8618915 -175669747 - AluJb SINE Alu 0 312 1 2277 105 0 0 chr4 8618975 8619280 -175669382 + AluSc SINE Alu 1 305 -4 204 255 0 0 chr4 8620152 8620199 -175668463 - MIR SINE MIR -93 169 123 1378 141 33 40 chr4 8620264 8620568 -175668094 - AluY SINE Alu -7 304 3 204 255 0 0 chr4 8621058 8621105 -175667557 - MIR SINE MIR -93 169 123 2353 51 34 0 chr4 8621170 8621464 -175667198 - AluY SINE Alu -7 304 1 2065 101 34 0 chr4 8621464 8621760 -175666902 - AluSx SINE Alu -6 306 1 231 229 0 0 chr4 8621824 8621872 -175666790 - MIR SINE MIR -137 125 78 1014 75 0 61 chr4 8622228 8622375 -175666287 + AluSq/x SINE Alu 1 138 -175 1855 147 20 0 chr4 8622377 8622676 -175665986 + AluSx SINE Alu 6 310 -2 255 31 0 0 chr4 8623065 8623097 -175665565 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 629 261 138 4 chr4 8623104 8623364 -175665298 + L2 LINE L2 2670 2964 -350 594 231 104 73 chr4 8623597 8623854 -175664808 - MLT1C LTR MaLR -16 451 181 2034 117 27 0 chr4 8623854 8624152 -175664510 - AluSx SINE Alu -3 309 4 594 231 104 73 chr4 8624152 8624210 -175664452 - MLT1C LTR MaLR -286 181 126 310 191 32 0 chr4 8624208 8624271 -175664391 + MER50 LTR ERV1 10 74 -660 * 350 199 155 10 chr4 8624289 8624392 -175664270 - MLT1C LTR MaLR -263 127 9 225 298 115 10 chr4 8624667 8624771 -175663891 + L3 LINE CR1 1460 1574 -3 1627 127 3 67 chr4 8624787 8624901 -175663761 + AluJo SINE Alu 1 121 -191 2187 131 49 25 chr4 8624901 8625267 -175663395 - THE1C LTR MaLR 0 375 1 1627 127 3 67 chr4 8625267 8625436 -175663226 + AluJo SINE Alu 121 266 -46 642 314 101 18 chr4 8625457 8625785 -175662877 + MLT1J2 LTR MaLR 96 450 0 528 323 32 32 chr4 8625785 8626002 -175662660 + MIR SINE MIR 40 256 -6 185 317 0 0 chr4 8626264 8626324 -175662338 - MER5A DNA MER1_type -2 187 128 335 291 185 7 chr4 8626355 8626506 -175662156 + MER5A DNA MER1_type 4 181 -8 258 229 105 67 chr4 8626836 8626941 -175661721 - MIR SINE MIR -70 138 30 222 232 49 61 chr4 8626986 8627068 -175661594 - MER5B DNA MER1_type -30 148 68 187 370 99 6 chr4 8627263 8627425 -175661237 - L2 LINE L2 -168 3104 2928 780 248 169 12 chr4 8627443 8628010 -175660652 + L2 LINE L2 2624 3295 -18 2038 104 21 3 chr4 8628200 8628489 -175660173 - AluSg SINE Alu -16 294 1 336 275 9 46 chr4 8628885 8628994 -175659668 + MIR SINE MIR 47 151 -57 273 302 35 35 chr4 8629284 8629400 -175659262 - MIR3 SINE MIR -21 187 72 1754 165 3 34 chr4 8629548 8629870 -175658792 + AluJb SINE Alu 1 312 0 419 213 11 0 chr4 8630226 8630320 -175658342 - MER5A DNA MER1_type -83 106 12 197 284 91 45 chr4 8630425 8630513 -175658149 - MIR SINE MIR -95 113 22 5016 184 36 9 chr4 8630621 8631708 -175656954 - MER45R DNA AcHobo -8 1573 458 479 312 74 0 chr4 8631881 8632083 -175656579 - MER112 DNA MER1_type -12 248 32 286 282 87 28 chr4 8632694 8632837 -175655825 - MIR SINE MIR -52 210 58 260 336 29 10 chr4 8633147 8633251 -175655411 + MIR3 SINE MIR 68 173 -35 542 121 103 52 chr4 8633258 8633288 -175655374 + MER53 DNA DNA 1 28 -161 3471 73 14 2 chr4 8633288 8633727 -175654935 + MLT2A1 LTR ERVL 1 444 0 542 121 103 52 chr4 8633727 8633812 -175654850 + MER53 DNA DNA 28 122 -67 * 3365 159 11 15 chr4 8633795 8634441 -175654221 - MER50 LTR ERV1 -10 724 3 279 175 113 25 chr4 8634442 8634522 -175654140 - MER53 DNA DNA -102 87 1 276 309 167 0 chr4 8635634 8635802 -175652860 + LTR16C LTR ERVL 205 400 -91 2931 148 60 4 chr4 8635845 8636345 -175652317 + LTR10A LTR ERV1 1 528 -81 346 247 12 0 chr4 8636370 8636451 -175652211 + LTR16C LTR ERVL 410 491 0 315 221 0 0 chr4 8636844 8636930 -175651732 + (CA)n Simple_repeat Simple_repeat 1 86 0 299 321 71 9 chr4 8637370 8637482 -175651180 + L2 LINE L2 3153 3271 -1 2354 56 7 13 chr4 8638798 8639100 -175649562 + AluY SINE Alu 1 300 -11 201 295 64 13 chr4 8639499 8639577 -175649085 + L2 LINE L2 3190 3271 -1 512 194 8 0 chr4 8639973 8640107 -175648555 + (TAAA)n Simple_repeat Simple_repeat 4 138 0 1468 148 121 8 chr4 8640228 8640484 -175648178 + AluSg SINE Alu 1 285 -25 201 254 15 30 chr4 8640555 8640622 -175648040 - MIR SINE MIR -62 146 81 314 349 108 5 chr4 8641220 8641415 -175647247 - MIR SINE MIR -34 228 14 663 118 0 2 chr4 8641599 8641853 -175646809 + AluSx SINE Alu 1 305 0 242 293 13 0 chr4 8641891 8641966 -175646696 + L1MB7 LINE L1 5788 5863 -258 192 163 0 0 chr4 8642013 8642056 -175646606 + CT-rich Low_complexity Low_complexity 2 44 0 255 250 18 36 chr4 8642058 8642170 -175646492 + (TAGA)n Simple_repeat Simple_repeat 4 113 0 2090 128 0 0 chr4 8642297 8642601 -175646061 - AluSx SINE Alu -8 304 1 2118 98 0 7 chr4 8642641 8642948 -175645714 - AluSx SINE Alu 0 305 1 276 336 32 0 chr4 8642975 8643100 -175645562 - L1ME4a LINE L1 0 6121 5993 791 280 24 0 chr4 8643150 8643357 -175645305 + MIR SINE MIR 13 224 -38 2244 210 48 95 chr4 8643967 8644009 -175644653 - L1MB8 LINE L1 0 6178 6136 1543 180 25 3 chr4 8644009 8644327 -175644335 + AluJb SINE Alu 1 312 0 2244 210 48 95 chr4 8644327 8645018 -175643644 - L1MB8 LINE L1 -42 6136 5480 469 243 96 0 chr4 8645211 8645388 -175643274 - MIR SINE MIR -19 243 50 639 265 43 28 chr4 8645495 8645706 -175642956 + L1MB7 LINE L1 5953 6166 -18 198 234 21 0 chr4 8645739 8645786 -175642876 - MIR3 SINE MIR -47 161 114 247 166 33 44 chr4 8646461 8646642 -175642020 + (TG)n Simple_repeat Simple_repeat 2 180 0 261 214 60 86 chr4 8646694 8646811 -175641851 - L2 LINE L2 -143 3129 3016 304 336 25 0 chr4 8646838 8646960 -175641702 - MIR SINE MIR -78 184 60 180 333 26 0 chr4 8647211 8647289 -175641373 + L2 LINE L2 3225 3304 -9 461 310 127 32 chr4 8647300 8647584 -175641078 - L2 LINE L2 0 3313 3003 1017 231 5 0 chr4 8649205 8649408 -175639254 + MER58A DNA MER1_type 21 224 0 680 300 23 9 chr4 8649485 8649705 -175638957 - MIR SINE MIR -19 243 21 305 259 52 26 chr4 8650254 8650370 -175638292 - LTR16C LTR ERVL -20 471 353 410 231 196 7 chr4 8650616 8650759 -175637903 + MER5A DNA MER1_type 14 183 -6 412 303 140 0 chr4 8651271 8651449 -175637213 - L3 LINE CR1 -42 1535 1333 197 274 24 48 chr4 8651449 8651533 -175637129 - L3 LINE CR1 -504 1073 992 320 339 25 8 chr4 8652403 8652524 -175636138 + L2 LINE L2 3181 3303 -10 228 288 0 0 chr4 8653270 8653329 -175635333 + MIR SINE MIR 92 150 -112 188 274 68 14 chr4 8654227 8654300 -175634362 - MIR SINE MIR -73 135 59 615 312 25 0 chr4 8654446 8654648 -175634014 + MIR SINE MIR 44 250 -12 329 324 56 7 chr4 8654752 8654894 -175633768 - L2 LINE L2 -9 3263 3115 186 161 0 0 chr4 8655314 8655345 -175633317 + L2 LINE L2 3264 3294 -19 664 121 0 0 chr4 8656187 8656278 -175632384 - AluJb SINE Alu -23 289 199 482 74 0 158 chr4 8656379 8656474 -175632188 + MADE1 DNA Mariner 1 80 0 1267 215 60 41 chr4 8657162 8657529 -175631133 + MLT1A2 LTR MaLR 1 374 0 1254 146 10 5 chr4 8657545 8657767 -175630895 - AluJb SINE Alu 0 308 86 642 268 105 8 chr4 8657891 8658130 -175630532 + MIR SINE MIR 1 262 0 823 200 87 20 chr4 8658258 8658453 -175630209 + MLT1J LTR MaLR 190 397 -114 542 268 153 10 chr4 8659499 8659708 -175628954 + MIR SINE MIR 24 262 0 364 255 10 31 chr4 8659845 8659943 -175628719 + MIR SINE MIR 97 192 -70 1364 200 31 7 chr4 8660020 8660310 -175628352 + AluJo SINE Alu 1 297 -15 216 330 29 19 chr4 8660379 8660482 -175628180 - MIR3 SINE MIR -14 194 91 337 277 57 29 chr4 8660604 8660978 -175627684 + L1P LINE L1 4672 5054 -1092 1473 269 51 76 chr4 8661251 8661798 -175626864 + L1MC4a LINE L1 493 1012 -5193 674 222 0 0 chr4 8661798 8661950 -175626712 + FLAM_A SINE Alu 1 152 0 1473 269 51 76 chr4 8661950 8662270 -175626392 + L1MC4a LINE L1 1012 1339 -4866 591 248 19 6 chr4 8662380 8662541 -175626121 + MER104 DNA Tc2 1 163 -17 253 203 25 25 chr4 8662570 8662649 -175626013 + HAL1 LINE L1 1494 1572 -935 1032 324 48 30 chr4 8662686 8663417 -175625245 + L1MEc LINE L1 107 850 -5546 387 210 20 108 chr4 8663411 8663606 -175625056 + L1MEc LINE L1 2838 3015 -3200 * 856 178 89 0 chr4 8663663 8663854 -175624808 - L1MB3 LINE L1 -143 6040 5833 435 282 77 71 chr4 8664011 8664562 -175624100 + L1MC4a LINE L1 2093 2614 -3601 3476 163 26 53 chr4 8664562 8665296 -175623366 - L1MB3 LINE L1 0 6183 5468 1772 208 43 3 chr4 8665296 8665643 -175623019 - MLT1A1 LTR MaLR -4 361 1 3476 163 26 53 chr4 8665643 8665665 -175622997 - L1MB3 LINE L1 -715 5468 5447 435 282 77 71 chr4 8665665 8665787 -175622875 + L1MC4a LINE L1 2614 2734 -3481 1247 279 91 36 chr4 8665810 8666539 -175622123 + L1MC4a LINE L1 4436 5204 -1011 1292 158 0 23 chr4 8666559 8666780 -175621882 - AluJo SINE Alu -25 287 72 588 192 13 40 chr4 8667823 8667974 -175620688 + MER68 LTR ERV1 72 218 -344 683 284 34 59 chr4 8719433 8719672 -175568990 - MIR SINE MIR -14 248 16 35 41 0 0 chr4 8719733 8719782 -175568880 + AT_rich Low_complexity Low_complexity 1 49 0 1684 94 51 0 chr4 8719827 8720062 -175568600 + AluSq SINE Alu 1 247 -66 192 282 117 29 chr4 8721347 8721450 -175567212 + MIR SINE MIR 20 131 -131 984 185 0 14 chr4 8721542 8721753 -175566909 + MER96B DNA MER1_type? 4 211 -206 821 160 96 0 chr4 8721880 8722036 -175566626 - AluJb SINE Alu -21 291 121 285 273 37 59 chr4 8722372 8722529 -175566133 + L1MC4a LINE L1 5772 5926 -1951 2120 114 0 7 chr4 8722529 8722827 -175565835 + AluSq SINE Alu 1 296 -17 285 273 37 59 chr4 8722827 8722856 -175565806 + L1MC4a LINE L1 5926 5954 -1923 476 113 0 0 chr4 8723713 8723784 -175564878 + MLT1B LTR MaLR 119 189 -201 773 153 0 8 chr4 8723817 8723941 -175564721 + FRAM SINE Alu 49 171 -5 805 194 70 0 chr4 8723945 8724131 -175564531 + MLT1B LTR MaLR 192 390 0 270 221 63 32 chr4 8724349 8724444 -175564218 - L2 LINE L2 -258 3014 2917 1911 133 3 14 chr4 8725062 8725355 -175563307 + AluJo SINE Alu 1 290 -22 2022 123 0 13 chr4 8725355 8725655 -175563007 - AluSx SINE Alu -16 296 1 376 328 66 25 chr4 8725660 8725904 -175562758 - HERV16 LTR ERVL -3456 1540 1287 213 213 0 0 chr4 8726627 8726674 -175561988 + CT-rich Low_complexity Low_complexity 3 49 0 884 188 152 25 chr4 8726854 8727130 -175561532 + MLT1C LTR MaLR 17 327 -140 187 256 23 0 chr4 8727202 8727245 -175561417 - MIR SINE MIR -102 160 117 499 183 0 11 chr4 8727621 8727714 -175560948 - MLT1I LTR MaLR -317 92 1 1823 161 0 3 chr4 8727767 8728058 -175560604 + AluSx SINE Alu 22 311 -1 233 307 40 10 chr4 8728217 8728318 -175560344 + L1MC/D LINE L1 5475 5578 -766 318 324 119 26 chr4 8728351 8728703 -175559959 - LTR16A LTR ERVL -53 397 13 235 341 47 0 chr4 8728805 8728890 -175559772 + L2 LINE L2 3180 3268 -4 463 259 40 26 chr4 8728925 8729176 -175559486 + L2 LINE L2 2580 2944 -328 339 200 0 29 chr4 8729190 8729260 -175559402 - L2 LINE L2 -241 3072 3005 231 232 0 0 chr4 8729377 8729433 -175559229 + (TGGA)n Simple_repeat Simple_repeat 2 57 0 264 260 55 0 chr4 8729897 8729970 -175558692 + MIR3 SINE MIR 115 191 -17 353 240 156 7 chr4 8730850 8731004 -175557658 - MIR3 SINE MIR -15 193 17 4422 188 21 40 chr4 8733129 8734346 -175554316 - L1M2 LINE L1 -744 5402 4315 1049 184 16 5 chr4 8734880 8735070 -175553592 + AluJb SINE Alu 43 234 -78 1535 148 0 49 chr4 8735139 8735423 -175553239 + AluJo SINE Alu 31 300 -12 2308 96 0 0 chr4 8735433 8735734 -175552928 + AluSq SINE Alu 1 301 -12 1045 186 29 0 chr4 8735743 8735947 -175552715 + MLT1A1 LTR MaLR 156 365 0 240 206 82 27 chr4 8735947 8736011 -175552651 + MLT1C LTR MaLR 496 563 -4 1409 216 26 31 chr4 8736032 8736265 -175552397 - L1ME LINE L1 -384 5778 5546 1059 228 60 85 chr4 8736265 8736665 -175551997 + MLT1B LTR MaLR 1 390 0 1409 216 26 31 chr4 8736665 8736852 -175551810 - L1ME LINE L1 -616 5546 5360 395 277 31 15 chr4 8737338 8737468 -175551194 - MER63A DNA MER1_type -26 184 53 264 143 0 0 chr4 8737563 8737605 -175551057 + (TGAA)n Simple_repeat Simple_repeat 4 45 0 981 162 9 12 chr4 8737607 8737936 -175550726 + (TGAG)n Simple_repeat Simple_repeat 1 327 0 307 371 111 22 chr4 8738252 8738613 -175550049 - L2 LINE L2 -3 3269 2877 201 278 19 0 chr4 8738622 8738676 -175549986 + L2 LINE L2 3217 3271 -1 299 226 66 47 chr4 8738968 8739074 -175549588 - MIR3 SINE MIR 0 208 101 596 271 81 9 chr4 8740518 8740739 -175547923 + MLT1D LTR MaLR 261 497 -8 318 98 0 0 chr4 8742138 8742189 -175546473 + (TTCA)n Simple_repeat Simple_repeat 4 54 0 243 320 70 23 chr4 8742286 8742414 -175546248 - L2 LINE L2 0 3313 3180 605 136 39 13 chr4 8742748 8742903 -175545759 + (TGGA)n Simple_repeat Simple_repeat 4 162 0 228 317 37 0 chr4 8743500 8743582 -175545080 + L2 LINE L2 3188 3272 0 240 255 20 0 chr4 8744753 8744804 -175543858 + C-rich Low_complexity Low_complexity 4 55 0 339 200 88 0 chr4 8744997 8745077 -175543585 - MIR SINE MIR -110 152 66 195 238 79 16 chr4 8745337 8745400 -175543262 + L3 LINE CR1 968 1034 -543 192 300 0 33 chr4 8746115 8746175 -175542487 + L3 LINE CR1 1410 1467 -110 217 339 0 0 chr4 8748842 8748904 -175539758 + MIR SINE MIR 92 153 -55 351 157 0 96 chr4 8749051 8749249 -175539413 + (CAGCC)n Simple_repeat Simple_repeat 2 180 0 384 171 0 67 chr4 8749277 8749470 -175539192 + (CAGCC)n Simple_repeat Simple_repeat 1 180 0 443 141 0 70 chr4 8749515 8749700 -175538962 + (CAGCC)n Simple_repeat Simple_repeat 2 173 0 387 162 0 70 chr4 8749731 8749916 -175538746 + (CAGCC)n Simple_repeat Simple_repeat 2 173 0 769 241 126 27 chr4 8750488 8750917 -175537745 - MLT1C LTR MaLR -17 488 10 1510 271 121 2 chr4 8751237 8751808 -175536854 + L1MC3 LINE L1 7077 7715 -70 263 263 222 0 chr4 8751858 8751957 -175536705 + MIR SINE MIR 14 134 -128 318 127 0 48 chr4 8751966 8752029 -175536633 + L1MD3 LINE L1 7923 7982 -13 195 209 47 0 chr4 8752804 8752847 -175535815 + MIR SINE MIR 14 58 -204 312 127 0 0 chr4 8752987 8753042 -175535620 + (TGAA)n Simple_repeat Simple_repeat 2 56 0 1054 269 73 24 chr4 8753405 8753829 -175534833 - MLT1C LTR MaLR 0 467 23 341 242 87 27 chr4 8754659 8754808 -175533854 + L1ME4a LINE L1 5952 6109 -12 2233 104 7 0 chr4 8754998 8755297 -175533365 - AluSx SINE Alu -11 301 1 365 300 27 9 chr4 8755914 8756024 -175532638 + L2 LINE L2 3201 3312 -1 270 279 0 0 chr4 8756024 8756085 -175532577 - MIR SINE MIR -92 170 110 251 350 8 8 chr4 8756170 8756290 -175532372 - L2 LINE L2 -220 3052 2933 230 359 127 0 chr4 8756329 8756471 -175532191 - MIR SINE MIR -26 236 77 187 239 69 92 chr4 8756507 8756637 -175532025 + L3 LINE CR1 1375 1501 -76 501 225 18 0 chr4 8756934 8757045 -175531617 - MER45 DNA AcHobo -840 113 1 243 0 0 0 chr4 8758581 8758608 -175530054 + (CA)n Simple_repeat Simple_repeat 2 28 0 398 248 28 0 chr4 8758750 8758859 -175529803 - MER45C DNA AcHobo -759 194 83 574 214 6 16 chr4 8760682 8760864 -175527798 + (TGAG)n Simple_repeat Simple_repeat 1 180 0 220 188 42 0 chr4 8760866 8760914 -175527748 + (TGAA)n Simple_repeat Simple_repeat 3 52 0 1071 150 1 6 chr4 8760914 8761708 -175526954 + (TGAG)n Simple_repeat Simple_repeat 1 789 0 204 40 0 0 chr4 8762637 8762662 -175526000 + (A)n Simple_repeat Simple_repeat 1 25 0 378 281 119 24 chr4 8763271 8763481 -175525181 + MIR SINE MIR 31 260 -2 253 352 37 15 chr4 8763939 8764108 -175524554 + MIR SINE MIR 3 172 -68 402 282 22 66 chr4 8764299 8764500 -175524162 + MIR3 SINE MIR 15 206 -56 468 136 0 0 chr4 8765272 8765360 -175523302 + (TGAG)n Simple_repeat Simple_repeat 2 89 0 327 98 0 20 chr4 8765699 8765750 -175522912 + (GGA)n Simple_repeat Simple_repeat 1 50 0 464 371 125 0 chr4 8766891 8767171 -175521491 - L3 LINE CR1 -33 1544 1230 360 274 75 52 chr4 8767348 8767600 -175521062 + L2 LINE L2 2842 3099 -173 1261 246 62 42 chr4 8767843 8768340 -175520322 - MER90 LTR ERV1 0 614 108 310 313 0 0 chr4 8769637 8769717 -175518945 + L2 LINE L2 3211 3290 -23 331 330 19 0 chr4 8769832 8769935 -175518727 - MIR SINE MIR -111 151 47 273 347 28 94 chr4 8770043 8770478 -175518184 - L2 LINE L2 -1 3312 2907 329 281 58 28 chr4 8771823 8772103 -175516559 - L1ME4a LINE L1 -230 5891 5594 300 422 12 12 chr4 8772173 8772334 -175516328 - L1ME4a LINE L1 -637 5484 5324 5556 182 55 36 chr4 8772511 8773939 -175514723 + L1M4c LINE L1 1 1456 -4928 498 139 0 0 chr4 8774056 8774128 -175514534 - AluS SINE Alu -239 73 2 747 179 0 19 chr4 8774130 8774286 -175514376 + L1M4c LINE L1 1445 1597 -4787 474 320 10 10 chr4 8774584 8774778 -175513884 + MLT1J LTR MaLR 23 216 -295 553 345 93 13 chr4 8775045 8775433 -175513229 + L1ME4a LINE L1 5478 5896 -225 2425 59 20 3 chr4 8776184 8776490 -175512172 + AluY SINE Alu 1 311 0 191 323 16 0 chr4 8777443 8777505 -175511157 + L2 LINE L2 3249 3311 -2 450 219 21 20 chr4 8777697 8777828 -175510834 - MIR SINE MIR -43 165 33 227 255 0 0 chr4 8778154 8778205 -175510457 + C-rich Low_complexity Low_complexity 4 54 0 655 169 272 0 chr4 8778225 8778438 -175510224 - MER58D DNA MER1_type 0 386 116 180 343 125 46 chr4 8778874 8779090 -175509572 - L2 LINE L2 -10 3262 3030 453 244 17 9 chr4 8779272 8779387 -175509275 + MIR SINE MIR 6 121 -141 693 298 48 4 chr4 8779637 8779865 -175508797 + MIR SINE MIR 6 243 -19 655 251 184 43 chr4 8780202 8780621 -175508041 + MLT1D LTR MaLR 3 480 -25 530 241 60 79 chr4 8781758 8782023 -175506639 + MLT1D-int LTR MaLR 1112 1371 0 1792 215 36 32 chr4 8782028 8782525 -175506137 + MLT1D LTR MaLR 6 504 -1 251 193 96 36 chr4 8782585 8782668 -175505994 + MIR SINE MIR 174 261 -1 201 224 41 0 chr4 8782683 8782732 -175505930 + MIR SINE MIR 78 128 -134 353 209 228 25 chr4 8783974 8784132 -175504530 - MLT1F1 LTR MaLR -14 535 346 441 293 95 32 chr4 8784158 8784441 -175504221 - MLT1H LTR MaLR -102 447 147 221 282 18 3 chr4 8784533 8784601 -175504061 - MIR SINE MIR -119 89 21 938 214 45 15 chr4 8785026 8785292 -175503370 - L1MB7 LINE L1 -9 6175 5902 234 261 0 0 chr4 8785586 8785632 -175503030 - MIR SINE MIR -106 156 111 348 314 42 0 chr4 8785841 8785959 -175502703 - MIR SINE MIR -90 172 50 316 232 24 0 chr4 8787328 8787410 -175501252 + MIR SINE MIR 61 144 -118 434 275 186 36 chr4 8787575 8787822 -175500840 - L2 LINE L2 0 3272 2989 197 181 28 56 chr4 8788487 8788559 -175500103 - L2 LINE L2 -176 3096 3027 272 278 52 61 chr4 8790094 8790209 -175498453 + L2 LINE L2 3200 3313 0 240 217 83 75 chr4 8792661 8792781 -175495881 + MIR SINE MIR 25 145 -117 453 149 0 0 chr4 8794154 8794228 -175494434 + MIR SINE MIR 71 144 -118 523 273 40 48 chr4 8795536 8795785 -175492877 - MER46C DNA MER2_type -2 336 90 950 177 89 7 chr4 8795859 8796227 -175492435 - MER31A LTR ERV1 -7 478 27 243 241 17 0 chr4 8796520 8796578 -175492084 + MIR SINE MIR 87 145 -63 688 206 265 5 chr4 8796824 8797043 -175491619 - MLT1F1 LTR MaLR -285 282 7 365 306 106 6 chr4 8798222 8798382 -175490280 + L2 LINE L2 2994 3169 -103 181 232 29 0 chr4 8798751 8798820 -175489842 + (TCCA)n Simple_repeat Simple_repeat 1 71 0 867 169 16 0 chr4 8798843 8799151 -175489511 + (TCCA)n Simple_repeat Simple_repeat 1 313 0 281 293 213 32 chr4 8799587 8799935 -175488727 + L2 LINE L2 2859 3269 -3 215 327 52 59 chr4 8799951 8800104 -175488558 - MIR3 SINE MIR -45 163 12 239 156 39 0 chr4 8800236 8800293 -175488369 + MIR SINE MIR 99 157 -62 343 244 62 31 chr4 8801185 8801378 -175487284 - L1ME4a LINE L1 -1 6120 5922 408 277 54 8 chr4 8801770 8801940 -175486722 - MIR3 SINE MIR -46 162 37 228 122 0 0 chr4 8802474 8802515 -175486147 + (CA)n Simple_repeat Simple_repeat 2 42 0 3165 234 71 40 chr4 8802668 8803626 -175485036 + L1MD1 LINE L1 4813 5831 -411 2020 132 0 3 chr4 8803626 8803922 -175484740 + AluSx SINE Alu 1 295 -17 3165 234 71 40 chr4 8803922 8804342 -175484320 + L1MD1 LINE L1 5831 6237 -5 378 107 0 0 chr4 8804474 8804530 -175484132 + (TGG)n Simple_repeat Simple_repeat 1 56 0 218 350 21 43 chr4 8805084 8805224 -175483438 - L2 LINE L2 -453 2861 2725 250 312 37 17 chr4 8805399 8805530 -175483132 + MIR SINE MIR 15 147 -74 1492 127 5 9 chr4 8805828 8806071 -175482591 + AluSg SINE Alu 62 303 0 323 187 80 0 chr4 8806522 8806597 -175482065 + MIR SINE MIR 64 144 -64 228 180 20 40 chr4 8807203 8807253 -175481409 - MIR SINE MIR -56 152 104 191 318 0 35 chr4 8808502 8808587 -175480075 - L2 LINE L2 -254 3018 2937 290 281 39 18 chr4 8809419 8809557 -175479105 - MLT1J1 LTR MaLR -303 143 27 2830 194 71 2 chr4 8809696 8810326 -175478336 + L1MB7 LINE L1 5444 6117 -67 22 0 0 0 chr4 8814695 8814717 -175473945 + AT_rich Low_complexity Low_complexity 1 22 0 1272 241 49 11 chr4 8815566 8815936 -175472726 + L1MB3 LINE L1 5584 5967 -216 769 152 0 43 chr4 8815936 8816074 -175472588 + FLAM_C SINE Alu 2 133 -10 906 148 0 7 chr4 8816116 8816265 -175472397 + L1MB3 LINE L1 6036 6183 0 1753 128 7 15 chr4 8816510 8816783 -175471879 + AluJo SINE Alu 14 284 -28 195 248 194 52 chr4 8817383 8817586 -175471076 + MIR SINE MIR 1 227 -35 1647 166 24 7 chr4 8819475 8819764 -175468898 + AluJb SINE Alu 1 294 -18 250 283 81 52 chr4 8820148 8820321 -175468341 - MIR3 SINE MIR -7 201 24 227 322 116 42 chr4 8821992 8822346 -175466316 - L2 LINE L2 -1321 1993 1614 387 290 131 11 chr4 8822722 8822898 -175465764 + L2 LINE L2 3082 3278 -35 396 223 12 2 chr4 8822902 8822998 -175465664 + FLAM_A SINE Alu 1 83 -50 223 273 38 15 chr4 8823009 8823141 -175465521 + (TA)n Simple_repeat Simple_repeat 1 135 0 191 280 25 0 chr4 8823299 8823352 -175465310 - MIR SINE MIR -68 140 97 1368 262 89 12 chr4 8825004 8825497 -175463165 + MER90 LTR ERV1 84 614 0 381 333 20 41 chr4 8826736 8826982 -175461680 - L2 LINE L2 -825 2489 2249 830 286 92 64 chr4 8827127 8827833 -175460829 - L2 LINE L2 -1449 1865 1140 2387 47 3 10 chr4 8828788 8829087 -175459575 + AluY SINE Alu 1 297 -14 264 241 73 58 chr4 8829326 8829463 -175459199 + HAL1b LINE L1 315 453 -895 2098 320 92 44 chr4 8830451 8830887 -175457775 - ERVL LTR ERVL -2930 2834 2420 2136 121 156 3 chr4 8830887 8831258 -175457404 - MSTA LTR MaLR 0 428 1 2098 320 92 44 chr4 8831258 8832252 -175456410 - ERVL LTR ERVL -3344 2420 1335 2185 68 10 0 chr4 8832580 8832872 -175455790 + AluSq SINE Alu 1 295 -18 198 289 0 0 chr4 8832894 8832946 -175455716 + MIR SINE MIR 189 240 -22 2680 93 8 3 chr4 8833349 8833702 -175454960 + THE1A LTR MaLR 1 355 0 1200 176 15 0 chr4 8837102 8837307 -175451355 + AluJb SINE Alu 84 291 -21 297 308 13 0 chr4 8837711 8837789 -175450873 + L2 LINE L2 3235 3313 0 675 256 92 5 chr4 8837826 8838033 -175450629 + MIR SINE MIR 32 256 -6 243 146 0 0 chr4 8838534 8838575 -175450087 + (TG)n Simple_repeat Simple_repeat 2 42 0 198 402 12 30 chr4 8839896 8840065 -175448597 + L2 LINE L2 3030 3195 -77 424 309 26 7 chr4 8840235 8840387 -175448275 + MIR SINE MIR 34 188 -74 370 296 117 15 chr4 8841797 8841993 -175446669 + MIR SINE MIR 35 250 -12 699 183 9 0 chr4 8842691 8842806 -175445856 + FLAM_A SINE Alu 1 116 -17 2204 102 0 0 chr4 8845306 8845599 -175443063 - AluSx SINE Alu -19 293 1 210 299 13 13 chr4 8847284 8847361 -175441301 + L2 LINE L2 3194 3270 -2 1581 205 3 3 chr4 8847814 8848112 -175440550 + AluJb SINE Alu 1 298 -14 232 176 39 0 chr4 8848877 8848928 -175439734 + MER58A DNA MER1_type 27 79 -28 297 254 45 0 chr4 8848960 8849027 -175439635 + MER58A DNA MER1_type 155 224 0 180 171 0 0 chr4 8849046 8849081 -175439581 - L2 LINE L2 -3 3310 3276 322 158 12 98 chr4 8849183 8849265 -175439397 + MER21B LTR ERV1 1 75 -788 1444 231 60 10 chr4 8849325 8849710 -175438952 + MER21B LTR ERV1 292 695 -168 245 275 66 0 chr4 8851307 8851398 -175437264 - MIR3 SINE MIR -3 205 109 22 0 0 0 chr4 8852600 8852622 -175436040 + AT_rich Low_complexity Low_complexity 1 22 0 280 396 26 13 chr4 8853615 8853769 -175434893 - MIR3 SINE MIR -15 193 38 1790 244 70 52 chr4 8853770 8853839 -175434823 - Charlie1a DNA MER1_type -1404 1357 1291 1609 155 34 30 chr4 8853839 8854135 -175434527 + AluJb SINE Alu 14 310 -2 1790 244 70 52 chr4 8854135 8855351 -175433311 - Charlie1a DNA MER1_type -1470 1291 1 21 57 0 0 chr4 8855426 8855461 -175433201 + AT_rich Low_complexity Low_complexity 1 35 0 860 190 118 10 chr4 8855551 8855746 -175432916 + MER58A DNA MER1_type 1 216 -8 2213 120 0 13 chr4 8856782 8857090 -175431572 - AluJo SINE Alu -8 304 1 2423 62 3 3 chr4 8857678 8857967 -175430695 - AluY SINE Alu 0 311 23 3252 249 69 79 chr4 8858265 8858732 -175429930 + L1MC4 LINE L1 6614 7084 -911 2512 66 3 7 chr4 8858732 8859037 -175429625 + AluY SINE Alu 1 304 -7 2180 116 7 7 chr4 8859042 8859335 -175429327 + AluSx SINE Alu 1 293 -19 3252 249 69 79 chr4 8859335 8860316 -175428346 + L1MC4 LINE L1 7088 7994 -1 278 329 74 27 chr4 8861345 8861494 -175427168 - MIR3 SINE MIR -49 159 4 469 272 159 20 chr4 8863265 8863460 -175425202 + L3 LINE CR1 1233 1454 -123 674 168 0 0 chr4 8864087 8864206 -175424456 + FLAM_A SINE Alu 24 142 0 210 333 0 14 chr4 8864697 8864766 -175423896 - MIR SINE MIR -62 146 79 2336 64 0 30 chr4 8864897 8865193 -175423469 - AluY SINE Alu -4 307 21 557 238 0 0 chr4 8867338 8867464 -175421198 - FLAM_A SINE Alu -7 126 1 180 296 0 0 chr4 8867559 8867603 -175421059 - MIR3 SINE MIR -3 205 162 216 306 109 34 chr4 8867789 8867936 -175420726 - MIR SINE MIR -16 246 89 295 266 85 11 chr4 8867946 8868040 -175420622 - L2 LINE L2 -7 3306 3206 379 351 20 0 chr4 8869258 8869406 -175419256 + MIR3 SINE MIR 30 180 -28 2000 169 54 12 chr4 8870888 8871295 -175417367 + MSTB LTR MaLR 1 424 -2 1233 67 0 0 chr4 8871324 8871489 -175417173 - L1PA2 LINE L1 0 6155 5991 2050 133 3 13 chr4 8872126 8872427 -175416235 - AluJb SINE Alu -14 298 1 223 320 64 0 chr4 8872428 8872506 -175416156 - L2 LINE L2 -5 3308 3226 317 299 146 18 chr4 8872576 8872740 -175415922 - L2 LINE L2 -253 3060 2876 371 301 114 5 chr4 8872839 8873058 -175415604 + Charlie8 DNA MER1_type 1 243 -2174 804 241 97 0 chr4 8873882 8874119 -175414543 + MLT1B LTR MaLR 131 390 0 2878 84 7 5 chr4 8875141 8875567 -175413095 + L1P5 LINE L1 5365 5791 -360 229 161 0 0 chr4 8875560 8875616 -175413046 + L1MC4 LINE L1 6648 6703 -1339 * 303 191 0 0 chr4 8875618 8875681 -175412981 + (TA)n Simple_repeat Simple_repeat 1 63 0 2532 80 14 11 chr4 8875681 8876042 -175412620 + L1PB1 LINE L1 5782 6143 -8 34 42 0 0 chr4 8876073 8876121 -175412541 + AT_rich Low_complexity Low_complexity 1 48 0 1992 113 0 0 chr4 8876788 8877045 -175411617 - AluSq SINE Alu -56 257 1 1844 149 13 17 chr4 8877049 8877350 -175411312 - AluJb SINE Alu -12 300 1 1277 216 47 40 chr4 8878000 8878490 -175410172 + MER51C LTR ERV1 3 536 -104 1928 108 0 0 chr4 8878861 8879110 -175409552 - AluSg SINE Alu -61 249 1 675 205 13 0 chr4 8879111 8879262 -175409400 + L1MB5 LINE L1 6021 6173 -1 1286 124 47 0 chr4 8879266 8879500 -175409162 + L1MB3 LINE L1 5934 6178 -5 368 115 0 0 chr4 8879588 8879649 -175409013 + L1MC2 LINE L1 6271 6331 -13 192 118 0 0 chr4 8879745 8879754 -175408908 + (TTAGGG)n Simple_repeat Simple_repeat 2 10 -25 7104 43 0 2 chr4 8879754 8881249 -175407413 + L1PA5 LINE L1 4662 6154 0 192 118 0 0 chr4 8881249 8881273 -175407389 + (TTAGGG)n Simple_repeat Simple_repeat 9 35 0 1671 175 83 6 chr4 8881366 8881714 -175406948 - MLT1E2 LTR MaLR -6 620 246 21 0 0 0 chr4 8881721 8881742 -175406920 + GC_rich Low_complexity Low_complexity 1 21 0 739 184 20 169 chr4 8881772 8882115 -175406547 - MLT1E2 LTR MaLR -334 292 1 2297 97 0 3 chr4 8882514 8882813 -175405849 - AluSx SINE Alu -14 298 1 1620 86 16 19 chr4 8883508 8883764 -175404898 - MER51C LTR ERV1 -1 639 385 471 308 73 89 chr4 8883871 8884420 -175404242 + L1M4 LINE L1 2754 3408 -2738 388 293 27 20 chr4 8884505 8884652 -175404010 + L2 LINE L2 3125 3272 0 199 307 35 18 chr4 8884956 8885070 -175403592 + L2 LINE L2 2874 2989 -324 183 340 85 0 chr4 8885251 8885345 -175403317 + L2 LINE L2 3165 3266 -47 395 347 62 12 chr4 8885790 8886032 -175402630 + L3 LINE CR1 1218 1471 -106 246 240 0 0 chr4 8886285 8886335 -175402327 + L1ME4a LINE L1 5697 5746 -2062 264 286 36 0 chr4 8886337 8886421 -175402241 + L2 LINE L2 3162 3248 -65 2253 132 0 0 chr4 8886535 8886846 -175401816 + AluSx SINE Alu 1 311 -1 278 291 43 8 chr4 8886900 8887017 -175401645 + L1ME4a LINE L1 5998 6118 -3 263 317 0 10 chr4 8887598 8887702 -175400960 + L3 LINE CR1 1419 1521 -56 188 228 123 0 chr4 8888085 8888142 -175400520 + MIR SINE MIR 52 115 -147 313 221 0 12 chr4 8888510 8888596 -175400066 - MIR SINE MIR -139 123 39 2242 128 7 0 chr4 8888662 8888968 -175399694 - AluSx SINE Alu 0 312 5 403 250 46 9 chr4 8889559 8889667 -175398995 - MIR3 SINE MIR -14 194 83 317 237 10 10 chr4 8889826 8889923 -175398739 + MIR SINE MIR 39 135 -127 790 271 34 78 chr4 8890228 8890641 -175398021 - L2 LINE L2 0 3313 2919 235 194 328 0 chr4 8891322 8891389 -175397273 + MIR SINE MIR 38 126 -82 * 491 276 24 35 chr4 8891388 8891558 -175397104 - L3 LINE CR1 -2 1575 1408 408 287 89 0 chr4 8891605 8891750 -175396912 + MIR SINE MIR 34 192 -62 2867 134 8 102 chr4 8892025 8892116 -175396546 - L1MB3 LINE L1 -1 6182 6084 1573 187 61 0 chr4 8892116 8892394 -175396268 + AluJo SINE Alu 1 295 -17 2867 134 8 102 chr4 8892394 8892410 -175396252 - L1MB3 LINE L1 -99 6084 6068 2382 101 0 0 chr4 8892410 8892706 -175395956 + AluSx SINE Alu 1 296 -16 2460 97 0 0 chr4 8892708 8893019 -175395643 + AluY SINE Alu 1 311 0 2867 134 8 102 chr4 8893019 8893309 -175395353 - L1MB3 LINE L1 -116 6067 5863 1830 132 40 0 chr4 8893309 8893582 -175395080 - AluJb SINE Alu -17 295 12 2867 134 8 102 chr4 8893582 8893829 -175394833 - L1MB3 LINE L1 -320 5863 5594 873 118 67 0 chr4 8893831 8893950 -175394712 - AluJo SINE Alu -177 135 9 405 185 32 140 chr4 8893962 8894100 -175394562 - L1MB3 LINE L1 -585 5598 5477 261 0 0 0 chr4 8894100 8894129 -175394533 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 405 185 32 140 chr4 8894129 8894147 -175394515 - L1MB3 LINE L1 -706 5477 5459 2374 82 3 10 chr4 8895071 8895376 -175393286 + AluSp SINE Alu 1 303 -10 27 29 0 0 chr4 8897193 8897227 -175391435 + AT_rich Low_complexity Low_complexity 1 34 0 2563 72 0 0 chr4 8897227 8897533 -175391129 + AluY SINE Alu 1 306 -5 278 238 188 0 chr4 8897794 8897895 -175390767 + MIR SINE MIR 34 153 -55 212 281 22 45 chr4 8897995 8898025 -175390637 - MIR SINE MIR -70 192 163 2002 144 0 26 chr4 8898025 8898337 -175390325 - AluJo SINE Alu -8 304 1 212 281 22 45 chr4 8898337 8898395 -175390267 - MIR SINE MIR -99 163 106 244 281 34 22 chr4 8898453 8898542 -175390120 + L1ME4a LINE L1 5963 6052 -69 1202 144 0 11 chr4 8898555 8898742 -175389920 - AluSg/x SINE Alu -6 304 120 242 337 47 0 chr4 8899054 8899140 -175389522 + L2 LINE L2 3143 3232 -40 2105 141 0 3 chr4 8900832 8901145 -175387517 + AluJb SINE Alu 1 312 0 280 216 72 36 chr4 8901203 8901314 -175387348 - MIR3 SINE MIR -7 201 87 354 232 149 66 chr4 8901827 8902068 -175386594 + L1MC5 LINE L1 7494 7754 -207 481 128 26 0 chr4 8902102 8902180 -175386482 + AluSc SINE Alu 214 293 -16 909 194 23 60 chr4 8902180 8902396 -175386266 - LTR8A LTR ERV1 -243 484 277 1152 140 0 0 chr4 8902510 8902688 -175385974 + MER41C LTR ERV1 377 554 0 1573 153 8 4 chr4 8905194 8905435 -175383227 - AluJb SINE Alu -45 267 26 1657 147 39 70 chr4 8905559 8905710 -175382952 + AluJb SINE Alu 1 138 -174 2037 110 43 3 chr4 8905710 8905992 -175382670 + AluSx SINE Alu 1 293 -19 1657 147 39 70 chr4 8905992 8906152 -175382510 + AluJb SINE Alu 138 302 -10 210 222 44 0 chr4 8906329 8906374 -175382288 + MIR3 SINE MIR 108 154 -54 1905 157 3 0 chr4 8906386 8906686 -175381976 + AluJo SINE Alu 1 301 -11 2307 83 3 25 chr4 8906827 8907141 -175381521 - AluY SINE Alu -4 307 1 3432 135 19 19 chr4 8908472 8909041 -175379621 + L1MB4 LINE L1 5588 6156 -24 1908 133 77 17 chr4 8909054 8909406 -175379256 + THE1C LTR MaLR 1 373 -2 2095 128 0 6 chr4 8909935 8910247 -175378415 - AluSq SINE Alu -3 310 1 2312 65 0 20 chr4 8910754 8911069 -175377593 + AluY SINE Alu 1 311 0 1290 134 0 0 chr4 8911069 8911248 -175377414 + AluSg/x SINE Alu 134 312 0 1507 159 25 70 chr4 8911289 8911603 -175377059 + AluJo SINE Alu 1 300 -12 345 24 0 0 chr4 8911604 8911646 -175377016 + (GGAA)n Simple_repeat Simple_repeat 2 43 0 314 227 21 31 chr4 8911657 8911754 -175376908 + L1ME4a LINE L1 5966 6061 -60 1238 155 9 31 chr4 8912721 8912931 -175375731 + AluJo SINE Alu 86 292 -20 2434 85 0 0 chr4 8912931 8913237 -175375425 + AluSg SINE Alu 1 306 -4 1238 155 9 31 chr4 8913237 8913252 -175375410 + AluJo SINE Alu 292 306 -6 2162 96 10 3 chr4 8913405 8913698 -175374964 + AluSq SINE Alu 1 295 -18 298 278 38 105 chr4 8914197 8914406 -175374256 + MIR SINE MIR 57 251 -11 181 152 0 0 chr4 8915371 8915404 -175373258 + L2 LINE L2 3021 3053 -260 2275 93 0 35 chr4 8916707 8917019 -175371643 - AluSq SINE Alu -12 301 1 278 239 176 28 chr4 8917177 8917353 -175371309 - MIR SINE MIR -33 229 28 2335 99 3 0 chr4 8917791 8918094 -175370568 - AluSx SINE Alu -8 304 1 1685 137 56 14 chr4 8918701 8918869 -175369793 - AluJb SINE Alu -15 297 111 180 0 0 0 chr4 8918869 8918889 -175369773 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1685 137 56 14 chr4 8918889 8919005 -175369657 - AluJb SINE Alu -201 111 1 272 255 122 20 chr4 8919273 8919371 -175369291 - MIR SINE MIR -131 131 24 230 146 73 0 chr4 8919546 8919557 -175369105 + (CAGAA)n Simple_repeat Simple_repeat 1 10 -358 2155 110 3 7 chr4 8919557 8919847 -175368815 + AluSq SINE Alu 1 289 -24 230 146 73 0 chr4 8919847 8919889 -175368773 + (CAGAA)n Simple_repeat Simple_repeat 10 368 0 717 298 9 0 chr4 8919925 8920140 -175368522 + MIR SINE MIR 40 256 -6 215 258 21 43 chr4 8920314 8920407 -175368255 + MIR3 SINE MIR 112 202 -6 29 0 0 0 chr4 8920424 8920453 -175368209 + AT_rich Low_complexity Low_complexity 1 29 0 283 109 0 0 chr4 8920453 8920499 -175368163 - AluSc SINE Alu 0 299 254 466 37 0 111 chr4 8920599 8920680 -175367982 + L1PA2 LINE L1 6084 6155 0 492 283 28 28 chr4 8921360 8921611 -175367051 + L1MCa LINE L1 1404 1654 -4772 * 836 88 1 33 chr4 8921592 8921730 -175366932 + L1PB1 LINE L1 5659 5791 -360 417 241 0 0 chr4 8921731 8921843 -175366819 + (TA)n Simple_repeat Simple_repeat 2 113 0 2515 106 11 16 chr4 8921843 8922220 -175366442 + L1PB1 LINE L1 5776 6150 -1 304 222 21 0 chr4 8922241 8922317 -175366345 + L1M1 LINE L1 2887 3288 -4278 1240 180 171 59 chr4 8922317 8922673 -175365989 + MSTD LTR MaLR 1 396 0 559 199 85 50 chr4 8922729 8922930 -175365732 + L1MCa LINE L1 2039 2246 -4361 307 248 8 26 chr4 8922939 8923056 -175365606 + L1M1 LINE L1 3557 3671 -3894 5843 170 21 24 chr4 8923177 8924991 -175363671 - L1PA16 LINE L1 -1 6165 4367 2266 113 0 0 chr4 8925027 8925328 -175363334 - AluSg1 SINE Alu -8 301 1 2772 229 132 21 chr4 8925383 8925934 -175362728 + L1M1 LINE L1 3661 4149 -3416 1762 98 8 16 chr4 8925934 8926178 -175362484 + AluY SINE Alu 1 242 -69 2772 229 132 21 chr4 8926178 8926867 -175361795 + L1M1 LINE L1 4149 5110 -2455 2521 56 3 3 chr4 8926867 8927169 -175361493 + AluY SINE Alu 1 302 -9 2772 229 132 21 chr4 8927169 8927263 -175361399 + L1M1 LINE L1 5110 5192 -2373 182 314 64 71 chr4 8928648 8928788 -175359874 + MIR3 SINE MIR 3 141 -67 1158 79 0 0 chr4 8929320 8929472 -175359190 + AluY SINE Alu 160 311 0 2223 109 0 7 chr4 8929612 8929914 -175358748 - AluSx SINE Alu -12 300 1 26 64 0 0 chr4 8930329 8930376 -175358286 + AT_rich Low_complexity Low_complexity 1 47 0 2245 116 0 10 chr4 8930511 8930814 -175357848 + AluSx SINE Alu 1 300 -12 1201 188 127 68 chr4 8931423 8931820 -175356842 - L1M4 LINE L1 -1479 4667 4141 2149 194 124 10 chr4 8931821 8932330 -175356332 - Cheshire DNA MER1_type -299 2121 1555 505 122 0 0 chr4 8932584 8932658 -175356004 + AluS SINE Alu 3 76 -234 285 271 156 65 chr4 8933046 8933386 -175355276 + MLT1K LTR MaLR 184 554 -34 2031 135 10 0 chr4 8934256 8934553 -175354109 - AluSx SINE Alu -12 300 1 198 0 0 0 chr4 8934650 8934672 -175353990 + (A)n Simple_repeat Simple_repeat 1 22 0 1978 149 0 0 chr4 8934921 8935210 -175353452 + AluJb SINE Alu 11 299 -13 288 191 135 11 chr4 8935212 8935301 -175353361 - HAL1 LINE L1 -871 1636 1537 5072 64 0 5 chr4 8935463 8936103 -175352559 + L1PA6 LINE L1 5518 6154 0 1544 235 131 22 chr4 8936207 8936658 -175352004 + MLT1H1 LTR MaLR 43 542 -13 22 0 0 0 chr4 8936813 8936835 -175351827 + AT_rich Low_complexity Low_complexity 1 22 0 800 142 40 0 chr4 8937338 8937486 -175351176 + FRAM SINE Alu 22 175 -1 284 274 65 40 chr4 8937487 8937611 -175351051 - MIR SINE MIR -134 128 2 1797 128 0 4 chr4 8937912 8938162 -175350500 - AluJb SINE Alu -4 308 60 565 261 68 54 chr4 8938818 8938920 -175349742 - L2 LINE L2 -4 3309 3210 2334 97 0 0 chr4 8938920 8939218 -175349444 + AluSx SINE Alu 1 298 -14 565 261 68 54 chr4 8939218 8939395 -175349267 - L2 LINE L2 -103 3210 3026 524 197 146 0 chr4 8939866 8940003 -175348659 + L1ME3A LINE L1 6009 6165 -5 2470 77 0 13 chr4 8940215 8940527 -175348135 + AluSg SINE Alu 1 308 -2 238 229 16 33 chr4 8940618 8940679 -175347983 + MLT1K LTR MaLR 59 118 -470 2151 122 10 3 chr4 8940862 8941165 -175347497 + AluSx SINE Alu 1 305 -7 421 278 96 32 chr4 8941283 8941470 -175347192 + MIR SINE MIR 64 262 0 1492 276 128 25 chr4 8942089 8942796 -175345866 + L1MC4 LINE L1 7038 7951 -91 1234 175 44 0 chr4 8942796 8943070 -175345592 + L1MA4 LINE L1 6012 6297 -3 1492 276 128 25 chr4 8943070 8943173 -175345489 + L1MC4 LINE L1 7951 8042 0 1155 168 34 10 chr4 8943179 8943387 -175345275 - AluJb SINE Alu -16 296 84 1257 159 48 0 chr4 8944858 8945066 -175343596 + AluJo SINE Alu 85 302 -10 1010 114 0 0 chr4 8945476 8945608 -175343054 + FRAM SINE Alu 22 153 -23 246 105 0 0 chr4 8945958 8945996 -175342666 + (TC)n Simple_repeat Simple_repeat 1 38 0 1810 143 11 25 chr4 8946014 8946300 -175342362 - AluJb SINE Alu -30 282 1 24 0 0 0 chr4 8947415 8947439 -175341223 + AT_rich Low_complexity Low_complexity 1 24 0 716 237 6 34 chr4 8947557 8947734 -175340928 + FAM SINE Alu 2 173 -2 5723 17 0 2 chr4 8948131 8948768 -175339894 + L1PA3 LINE L1 5497 6132 -23 803 106 15 0 chr4 8948894 8949026 -175339636 + (TTTC)n Simple_repeat Simple_repeat 3 136 0 1831 106 0 0 chr4 8949038 8949275 -175339387 - AluSx SINE Alu -75 237 1 2852 145 19 0 chr4 8949300 8949770 -175338892 - L1MB3 LINE L1 -5 6178 5700 1876 157 3 19 chr4 8949775 8950088 -175338574 - AluJo SINE Alu -4 308 1 460 299 95 4 chr4 8950207 8950438 -175338224 - MIR SINE MIR -3 259 8 446 238 180 12 chr4 8951348 8951520 -175337142 - MIR SINE MIR -14 248 48 731 138 8 8 chr4 8951699 8951822 -175336840 + MLT1D LTR MaLR 9 131 -374 236 317 118 42 chr4 8951978 8952284 -175336378 + L2 LINE L2 2920 3248 -24 539 273 0 0 chr4 8952801 8952933 -175335729 - MIR SINE MIR -116 146 15 194 286 14 0 chr4 8953175 8953245 -175335417 - MIR SINE MIR -92 116 46 387 259 45 9 chr4 8953551 8953663 -175334999 + MIR SINE MIR 29 144 -64 817 211 0 87 chr4 8953835 8954043 -175334619 + MIR SINE MIR 33 222 -40 323 255 170 0 chr4 8955013 8955107 -175333555 + MIR SINE MIR 34 143 -65 1614 166 29 37 chr4 8956131 8956481 -175332181 + MLT2C1 LTR ERVL 1 347 -50 2637 43 0 0 chr4 8956484 8956785 -175331877 + AluY SINE Alu 1 301 -10 900 184 6 12 chr4 8956785 8956948 -175331714 + AluJb SINE Alu 134 295 -17 266 221 116 0 chr4 8956956 8957042 -175331620 - L2 LINE L2 -274 2998 2903 402 289 177 15 chr4 8957461 8957721 -175330941 - L2 LINE L2 -654 2660 2359 703 272 42 89 chr4 8957811 8958171 -175330491 - MLT1J LTR MaLR -163 348 6 1643 179 3 35 chr4 8958703 8959025 -175329637 - AluJb SINE Alu 0 313 1 293 253 103 11 chr4 8959259 8959346 -175329316 - MIR SINE MIR -89 173 79 483 225 42 7 chr4 8959503 8959645 -175329017 - L1ME2 LINE L1 -74 6090 5944 250 175 53 35 chr4 8959658 8959736 -175328926 - AluYb8 SINE Alu 0 321 243 * 296 133 0 0 chr4 8959713 8959758 -175328904 - Alu SINE Alu -258 45 1 1700 160 43 69 chr4 8960501 8960720 -175327942 - MLT1A1 LTR MaLR 0 365 159 2304 98 0 7 chr4 8960720 8961027 -175327635 - AluSc SINE Alu -4 305 1 1700 160 43 69 chr4 8961027 8961182 -175327480 - MLT1A1 LTR MaLR -206 159 1 370 279 31 8 chr4 8961207 8961336 -175327326 - MLT1G LTR MaLR -449 141 10 229 234 0 0 chr4 8961361 8961408 -175327254 - MIR SINE MIR 0 262 216 366 150 87 0 chr4 8961682 8961809 -175326853 + (CCTG)n Simple_repeat Simple_repeat 3 140 0 218 350 162 5 chr4 8962743 8962940 -175325722 + MIR SINE MIR 28 255 -7 274 316 64 22 chr4 8963583 8963712 -175324950 + MIR SINE MIR 24 141 -67 669 242 42 9 chr4 8963722 8963937 -175324725 - HAL1 LINE L1 -1270 1237 1016 265 266 21 43 chr4 8964024 8964118 -175324544 - HAL1 LINE L1 -1966 541 450 552 236 205 0 chr4 8964303 8964498 -175324164 + MLT1H1 LTR MaLR 308 542 -13 292 225 28 14 chr4 8965238 8965309 -175323353 + MIR SINE MIR 80 151 -111 1588 184 9 35 chr4 8965385 8965700 -175322962 - AluJb SINE Alu -3 309 3 2408 64 7 13 chr4 8966160 8966458 -175322204 + AluSc SINE Alu 1 296 -13 235 274 84 22 chr4 8966470 8966696 -175321966 + L1ME2 LINE L1 5708 5947 -217 221 306 116 41 chr4 8967197 8967344 -175321318 + L2 LINE L2 2264 2421 -893 1014 125 79 0 chr4 8967346 8967498 -175321164 - AluSg/x SINE Alu -15 297 134 2039 128 21 0 chr4 8967498 8967788 -175320874 - AluSx SINE Alu -16 296 1 537 273 133 60 chr4 8967791 8968176 -175320486 + L2 LINE L2 2418 2830 -484 198 333 15 0 chr4 8968322 8968388 -175320274 + MIR SINE MIR 195 261 -1 1897 170 39 0 chr4 8968455 8968785 -175319877 + MER2 DNA MER2_type 2 344 0 23 0 0 0 chr4 8970030 8970053 -175318609 + AT_rich Low_complexity Low_complexity 1 23 0 2009 128 59 6 chr4 8970505 8970825 -175317837 - MER1B DNA MER1_type 0 337 1 216 234 21 0 chr4 8970895 8970942 -175317720 - L2 LINE L2 -2 3270 3223 724 149 14 61 chr4 8971635 8971783 -175316879 + FLAM_C SINE Alu 2 142 -1 2258 113 19 10 chr4 8972392 8972701 -175315961 + AluSx SINE Alu 1 312 0 1383 55 0 6 chr4 8972888 8973053 -175315609 + AluY SINE Alu 1 164 -147 325 189 20 40 chr4 8973239 8973595 -175315067 + (TG)n Simple_repeat Simple_repeat 1 348 0 637 118 16 53 chr4 8973645 8973832 -175314830 + (TG)n Simple_repeat Simple_repeat 1 180 0 549 203 206 103 chr4 8974612 8974893 -175313769 - MLT1G LTR MaLR -66 524 220 321 241 36 0 chr4 8975044 8975127 -175313535 - MIR3 SINE MIR -42 166 81 183 305 21 53 chr4 8975514 8975609 -175313053 + L2 LINE L2 2738 2829 -485 2186 182 35 7 chr4 8976226 8976683 -175311979 + L1MB3 LINE L1 5714 6183 0 409 267 0 19 chr4 8976778 8976883 -175311779 - MIR SINE MIR -96 166 64 219 88 0 0 chr4 8977148 8977182 -175311480 + (CA)n Simple_repeat Simple_repeat 2 35 0 342 45 0 0 chr4 8977304 8977348 -175311314 + (TG)n Simple_repeat Simple_repeat 2 45 0 2209 116 0 0 chr4 8977348 8977633 -175311029 - AluSq SINE Alu -28 285 1 231 61 0 0 chr4 8977788 8977821 -175310841 + (GA)n Simple_repeat Simple_repeat 1 33 0 311 297 95 34 chr4 8978397 8978545 -175310117 - L2 LINE L2 -2 3311 3155 2121 123 0 3 chr4 8979119 8979412 -175309250 - AluJo SINE Alu -17 295 4 634 227 64 36 chr4 8980078 8980298 -175308364 - L2 LINE L2 -529 2785 2560 1808 98 84 42 chr4 8980354 8980641 -175308021 - AluY SINE Alu -12 299 1 2535 50 0 40 chr4 8981173 8981496 -175307166 + AluY SINE Alu 1 310 -1 21 0 0 0 chr4 8981887 8981908 -175306754 + AT_rich Low_complexity Low_complexity 1 21 0 713 149 18 0 chr4 8982141 8982255 -175306407 + FLAM_A SINE Alu 1 116 -17 23 0 0 0 chr4 8982862 8982885 -175305777 + GC_rich Low_complexity Low_complexity 1 23 0 213 211 0 18 chr4 8982894 8982951 -175305711 + (CGCGG)n Simple_repeat Simple_repeat 4 59 0 242 356 12 6 chr4 8983145 8983305 -175305357 + (CG)n Simple_repeat Simple_repeat 1 161 0 478 271 41 58 chr4 8983348 8983541 -175305121 - L1ME3 LINE L1 0 6313 6009 518 309 6 12 chr4 8983873 8984035 -175304627 + MLT1F1-int LTR MaLR 701 861 -510 444 245 15 110 chr4 8984320 8984520 -175304142 + MLT1F1-int LTR MaLR 1107 1287 -84 434 246 22 93 chr4 8984642 8984825 -175303837 + MLT1F1 LTR MaLR 3 172 -370 574 184 0 0 chr4 8984839 8984937 -175303725 + MER4A LTR ERV1 1 98 -566 272 180 20 0 chr4 8984939 8984989 -175303673 + MER4A LTR ERV1 263 313 -351 2082 116 14 0 chr4 8985016 8985320 -175303342 + AluSx SINE Alu 3 310 0 186 43 0 0 chr4 8985326 8985349 -175303313 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1641 112 0 92 chr4 8985349 8985653 -175303009 + MER4A LTR ERV1 389 664 0 930 218 102 9 chr4 8985654 8985879 -175302783 + MLT1F1 LTR MaLR 201 446 -121 1725 151 20 87 chr4 8985892 8985961 -175302701 + MLT1A1 LTR MaLR 1 73 -292 2818 118 34 0 chr4 8985961 8986375 -175302287 + MSTA LTR MaLR 1 428 0 1725 151 20 87 chr4 8986375 8986469 -175302193 + MLT1A1 LTR MaLR 73 172 -193 1597 172 34 30 chr4 8986469 8986766 -175301896 + AluJo SINE Alu 1 298 -14 1725 151 20 87 chr4 8986766 8986778 -175301884 + MLT1A1 LTR MaLR 172 183 -182 2415 96 0 0 chr4 8986778 8987079 -175301583 + AluSq SINE Alu 1 301 -12 1725 151 20 87 chr4 8987079 8987292 -175301370 + MLT1A1 LTR MaLR 183 365 0 261 206 82 27 chr4 8987292 8987356 -175301306 + MLT1F1 LTR MaLR 496 563 -4 2009 222 38 12 chr4 8987377 8987610 -175301052 - L1ME LINE L1 -384 5778 5552 1315 193 60 83 chr4 8987610 8988009 -175300653 + MLT1B LTR MaLR 1 390 0 2009 222 38 12 chr4 8988009 8988370 -175300292 - L1ME LINE L1 -610 5552 5167 261 350 87 0 chr4 8988644 8988747 -175299915 - L2 LINE L2 -17 3255 3144 257 190 76 38 chr4 8989062 8989141 -175299521 + MIR SINE MIR 160 241 -21 380 301 81 43 chr4 8992748 8992934 -175295728 - MLT1I LTR MaLR 0 409 217 263 281 37 0 chr4 8993012 8993094 -175295568 + (CATA)n Simple_repeat Simple_repeat 3 87 0 313 307 64 42 chr4 8993317 8993581 -175295081 - HsTC2 DNA Tc2 -1133 765 496 859 284 153 6 chr4 8993627 8993947 -175294715 + L2 LINE L2 2947 3313 0 337 280 272 29 chr4 8994017 8994260 -175294402 + L2 LINE L2 2442 2743 -571 549 231 30 30 chr4 8994289 8994458 -175294204 - L2 LINE L2 -1 3312 3144 3173 202 36 11 chr4 8994839 8995474 -175293188 + MER82 DNA MER2_type 1 651 -2 360 59 0 0 chr4 8995672 8995723 -175292939 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2041 237 15 46 chr4 8996079 8996686 -175291976 + L1MC4 LINE L1 6518 7105 -937 304 182 15 0 chr4 8996665 8996731 -175291931 + L1MC4a LINE L1 7158 7224 -584 * 502 241 97 14 chr4 8996724 8996736 -175291926 + L1MC4 LINE L1 7687 7697 -345 2282 108 3 0 chr4 8996736 8997032 -175291630 + AluSx SINE Alu 1 297 -15 502 241 97 14 chr4 8997032 8997226 -175291436 + L1MC4 LINE L1 7697 7910 -132 1982 115 10 20 chr4 8997292 8997597 -175291065 + AluSx SINE Alu 1 302 -10 2365 68 0 0 chr4 8997885 8998223 -175290439 + AluSx SINE Alu 1 312 0 1773 184 48 39 chr4 8998226 8998661 -175290001 + L1MB2 LINE L1 5731 6169 -2 761 169 15 0 chr4 8998740 8998870 -175289792 + AluJb SINE Alu 2 133 -179 329 247 43 99 chr4 8998879 8999041 -175289621 + L1ME LINE L1 5675 5827 -294 1973 161 0 13 chr4 8999044 8999360 -175289302 + AluJo SINE Alu 1 312 0 304 263 61 26 chr4 8999905 9000019 -175288643 - LTR67 LTR ERVL -331 226 109 836 160 8 0 chr4 9000111 9000236 -175288426 + AluJo/FLAM SINE Alu 1 126 -186 1922 114 0 67 chr4 9000237 9000553 -175288109 + AluY SINE Alu 1 295 -16 436 221 0 0 chr4 9000553 9000639 -175288023 + AluJ/FRAM SINE Alu 218 303 -9 2544 70 0 0 chr4 9001158 9001460 -175287202 + AluY SINE Alu 3 304 -7 2252 99 0 7 chr4 9001477 9001770 -175286892 + AluSq SINE Alu 6 296 -17 255 304 22 11 chr4 9002889 9002981 -175285681 - MIR SINE MIR -69 139 47 2076 141 0 3 chr4 9004047 9004360 -175284302 + AluJb SINE Alu 1 312 0 280 306 0 24 chr4 9004492 9004577 -175284085 + GA-rich Low_complexity Low_complexity 5 87 0 1660 206 73 23 chr4 9005937 9006500 -175282162 - MER39B LTR ERV1 -4 649 1 374 356 0 0 chr4 9007112 9007216 -175281446 + L1MC4 LINE L1 6600 6703 -1339 358 186 43 0 chr4 9007155 9007225 -175281437 - L1MCa LINE L1 -4358 2068 1996 * 261 163 0 0 chr4 9007226 9007275 -175281387 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 216 0 0 0 chr4 9007278 9007302 -175281360 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1207 115 82 0 chr4 9007303 9007486 -175281176 - AluSg/x SINE Alu -32 278 81 2156 109 3 0 chr4 9007505 9007818 -175280844 - AluSx SINE Alu 0 314 1 981 167 0 0 chr4 9007821 9007983 -175280679 - FRAM SINE Alu -16 160 1 2231 83 10 0 chr4 9008313 9008602 -175280060 + AluSx SINE Alu 12 303 -9 246 325 48 0 chr4 9009808 9009891 -175278771 - MIR3 SINE MIR -30 178 92 1399 248 117 7 chr4 9010401 9010821 -175277841 - MLT1C LTR MaLR -1 466 1 227 343 59 59 chr4 9010889 9011093 -175277569 + MIR SINE MIR 41 244 -18 461 321 31 5 chr4 9011177 9011373 -175277289 - L2 LINE L2 -96 3176 2976 1640 192 35 66 chr4 9011485 9011907 -175276755 + LTR2 LTR ERV1 41 449 0 875 121 0 0 chr4 9012680 9012804 -175275858 + FLAM_C SINE Alu 9 132 -11 334 294 37 28 chr4 9012993 9013102 -175275560 + MIR3 SINE MIR 61 170 -38 364 186 202 23 chr4 9013598 9013727 -175274935 + MIR SINE MIR 33 184 -78 1565 180 109 3 chr4 9013765 9014131 -175274531 + MLT2C2 LTR ERVL 5 409 -55 180 0 0 0 chr4 9014178 9014198 -175274464 + (CA)n Simple_repeat Simple_repeat 1 20 0 2176 108 0 0 chr4 9015098 9015393 -175273269 + AluSx SINE Alu 1 295 -17 1431 115 161 31 chr4 9015407 9015667 -175272995 - AluJo SINE Alu -18 294 1 188 345 138 29 chr4 9016039 9016213 -175272449 + L2 LINE L2 3031 3223 -49 361 315 12 43 chr4 9016610 9016772 -175271890 - L1M4 LINE L1 -2170 3976 3820 2220 89 23 3 chr4 9016794 9017097 -175271565 - AluSx SINE Alu -3 309 1 269 346 24 39 chr4 9017165 9017292 -175271370 - MIR SINE MIR -72 190 66 315 288 79 28 chr4 9018522 9018699 -175269963 + L2 LINE L2 1621 1806 -1508 359 276 0 29 chr4 9018725 9018830 -175269832 - L2 LINE L2 -345 2968 2867 431 344 58 0 chr4 9018910 9019064 -175269598 + HAL1 LINE L1 1470 1632 -875 263 351 192 0 chr4 9019583 9019734 -175268928 - MIR3 SINE MIR -13 195 16 2331 92 0 0 chr4 9019988 9020293 -175268369 - AluY SINE Alu -6 305 1 214 370 71 61 chr4 9020297 9020608 -175268054 + L2 LINE L2 2959 3272 0 2778 22 0 0 chr4 9020952 9021270 -175267392 + AluYb8 SINE Alu 1 318 0 234 206 103 0 chr4 9021399 9021467 -175267195 + MIR SINE MIR 122 196 -66 366 218 0 30 chr4 9022005 9022106 -175266556 - MER94 DNA DNA -21 113 16 194 299 133 52 chr4 9022306 9022651 -175266011 + L2 LINE L2 2808 3180 -133 250 315 43 11 chr4 9022662 9022733 -175265929 - MIR SINE MIR -5 257 181 870 168 0 0 chr4 9022733 9022864 -175265798 - FLAM_C SINE Alu -2 131 1 250 315 43 11 chr4 9022864 9022884 -175265778 - MIR SINE MIR -81 181 163 24 0 0 0 chr4 9025015 9025039 -175263623 + GC_rich Low_complexity Low_complexity 1 24 0 214 289 0 0 chr4 9025353 9025405 -175263257 + (CG)n Simple_repeat Simple_repeat 2 53 0 1332 90 57 5 chr4 9025563 9025775 -175262887 - pTR5 LTR ERV1 -2044 394 172 279 250 31 0 chr4 9025778 9025874 -175262788 - LTR30 LTR ERV1 -80 642 544 3681 148 58 44 chr4 9025874 9026771 -175261891 - pTR5 LTR ERV1 -413 2025 743 1686 139 19 38 chr4 9026797 9027113 -175261549 + AluJb SINE Alu 1 310 -2 194 278 165 0 chr4 9027313 9027410 -175261252 + L2 LINE L2 3100 3212 -60 335 331 52 13 chr4 9027441 9027595 -175261067 + L2 LINE L2 3147 3306 -7 688 178 94 42 chr4 9027690 9027866 -175260796 - MLT1E2 LTR MaLR -266 360 172 2047 193 8 3 chr4 9027866 9028229 -175260433 + MLT1A1 LTR MaLR 1 365 0 688 178 94 42 chr4 9028229 9028243 -175260419 - MLT1E2 LTR MaLR -454 172 160 507 178 0 37 chr4 9028836 9028943 -175259719 + MER58C DNA MER1_type 113 215 0 265 299 74 60 chr4 9029346 9029697 -175258965 + MLT1H LTR MaLR 107 546 -3 1915 139 10 10 chr4 9029939 9030234 -175258428 - AluJb SINE Alu -17 295 1 499 221 170 12 chr4 9030880 9031140 -175257522 + MLT1G1 LTR MaLR 5 270 -285 2142 87 0 0 chr4 9031162 9031437 -175257225 + AluSq SINE Alu 30 304 -9 1440 161 114 0 chr4 9031576 9031875 -175256787 - MLT1A1 LTR MaLR -14 351 19 2539 51 3 0 chr4 9032144 9032455 -175256207 + AluSp SINE Alu 1 312 -1 2413 45 0 0 chr4 9032501 9032791 -175255871 + AluY SINE Alu 12 301 -10 2427 32 0 3 chr4 9033369 9033654 -175255008 + AluY SINE Alu 14 297 -14 377 299 14 0 chr4 9033705 9034004 -175254658 + (TG)n Simple_repeat Simple_repeat 1 303 0 259 352 0 22 chr4 9033935 9034117 -175254545 + (TATG)n Simple_repeat Simple_repeat 1 178 0 * 526 299 0 3 chr4 9034075 9034448 -175254214 + (TG)n Simple_repeat Simple_repeat 1 371 0 2438 53 0 0 chr4 9034628 9034927 -175253735 - AluY SINE Alu -11 300 2 365 244 91 21 chr4 9035531 9035737 -175252925 + LTR16A LTR ERVL 3 254 -196 989 275 131 31 chr4 9035746 9036234 -175252428 - MLT1F LTR MaLR -5 537 1 271 267 61 38 chr4 9036238 9036369 -175252293 + LTR16A1 LTR ERVL 265 398 -59 465 215 82 38 chr4 9036450 9036608 -175252054 - MIR SINE MIR -59 203 39 260 303 148 43 chr4 9036672 9036834 -175251828 + L2 LINE L2 3133 3311 -2 1893 144 3 19 chr4 9037222 9037534 -175251128 - AluJb SINE Alu -5 307 1 545 172 15 15 chr4 9038197 9038331 -175250331 + CT-rich Low_complexity Low_complexity 2 135 0 1656 176 12 56 chr4 9038334 9038658 -175250004 - AluJb SINE Alu 0 312 3 765 197 8 0 chr4 9038684 9038816 -175249846 - FLAM_A SINE Alu 0 133 1 2119 184 38 25 chr4 9038963 9039058 -175249604 + L1MB7 LINE L1 5734 5826 -358 2084 120 10 0 chr4 9039058 9039367 -175249295 + AluSx SINE Alu 1 312 0 2119 184 38 25 chr4 9039367 9039499 -175249163 + L1MB7 LINE L1 5826 5955 -229 2451 58 0 13 chr4 9039499 9039810 -175248852 + AluY SINE Alu 1 307 -4 2119 184 38 25 chr4 9039810 9040026 -175248636 + L1MB7 LINE L1 5955 6184 0 1779 146 0 7 chr4 9040035 9040309 -175248353 + AluSx SINE Alu 1 272 -40 2464 46 0 20 chr4 9040311 9040617 -175248045 - AluY SINE Alu -11 300 1 208 123 15 46 chr4 9040631 9040696 -175247966 + A-rich Low_complexity Low_complexity 3 65 0 280 270 135 0 chr4 9040886 9040997 -175247665 - LTR16C LTR ERVL -282 209 84 235 349 0 8 chr4 9042019 9042145 -175246517 + CT-rich Low_complexity Low_complexity 1 125 0 237 310 0 14 chr4 9042579 9042650 -175246012 - MIR SINE MIR -122 140 71 180 280 93 40 chr4 9042933 9043008 -175245654 - L2 LINE L2 -1 3312 3234 192 265 235 0 chr4 9043477 9043575 -175245087 - MIR SINE MIR -68 140 20 2408 65 0 0 chr4 9043609 9043903 -175244759 - AluY SINE Alu -17 294 1 272 255 78 10 chr4 9043988 9044090 -175244572 - MIR SINE MIR -40 222 114 422 255 4 4 chr4 9045122 9045242 -175243420 - MIR SINE MIR -88 120 1 419 258 0 94 chr4 9045272 9045431 -175243231 + MIR SINE MIR 20 163 -99 283 323 71 0 chr4 9045427 9045526 -175243136 - L2 LINE L2 -3 3310 3205 * 213 150 33 33 chr4 9045679 9045739 -175242923 + (CAGGG)n Simple_repeat Simple_repeat 1 60 0 306 260 17 81 chr4 9046029 9046202 -175242460 - L1ME4a LINE L1 -1 6120 5959 341 206 8 145 chr4 9046300 9046431 -175242231 - L1ME4a LINE L1 -1 6120 6008 296 322 147 24 chr4 9046492 9046703 -175241959 + MIR SINE MIR 8 244 -18 550 208 88 0 chr4 9046782 9046907 -175241755 - MIR SINE MIR -25 237 102 1646 186 124 30 chr4 9046908 9047017 -175241645 + L1MB5 LINE L1 5699 5796 -378 1571 143 75 11 chr4 9047017 9047296 -175241366 + AluJb SINE Alu 1 297 -15 1646 186 124 30 chr4 9047296 9047621 -175241041 + L1MB5 LINE L1 5796 6174 0 198 273 26 39 chr4 9048139 9048216 -175240446 + MIR SINE MIR 109 184 -78 321 304 75 50 chr4 9048463 9048624 -175240038 + L1ME4a LINE L1 5946 6110 -11 249 335 152 11 chr4 9048714 9048905 -175239757 + L2 LINE L2 3027 3244 -28 200 333 61 26 chr4 9048912 9049026 -175239636 - MIR3 SINE MIR -76 132 15 261 230 2 45 chr4 9049397 9049473 -175239189 - MIR SINE MIR -63 145 82 216 235 12 74 chr4 9049708 9049789 -175238873 + MIR SINE MIR 172 247 -15 2016 88 0 4 chr4 9050253 9050513 -175238149 - AluSq SINE Alu -54 259 1 2124 125 0 0 chr4 9050516 9050813 -175237849 - AluSx SINE Alu -15 297 1 1028 150 0 0 chr4 9051143 9051303 -175237359 + AluSg/x SINE Alu 144 303 -6 2400 69 3 0 chr4 9051429 9051733 -175236929 + AluY SINE Alu 1 305 -6 2474 85 16 6 chr4 9051753 9052119 -175236543 + THE1C LTR MaLR 1 370 -5 2013 187 3 42 chr4 9052236 9052616 -175236046 - MLT1A1 LTR MaLR 0 365 1 2237 94 0 7 chr4 9052951 9053249 -175235413 - AluSq SINE Alu -17 296 1 1913 133 26 0 chr4 9053265 9053567 -175235095 - AluSx SINE Alu -2 310 1 1352 142 104 4 chr4 9054264 9054504 -175234158 - AluJo SINE Alu -12 300 37 378 258 99 88 chr4 9054531 9054814 -175233848 - L1MC5 LINE L1 -37 7924 7639 1775 138 7 10 chr4 9055330 9055626 -175233036 - AluJb SINE Alu -4 308 14 296 240 91 50 chr4 9055982 9056103 -175232559 - MIR SINE MIR -117 145 20 227 318 15 0 chr4 9056748 9056814 -175231848 + L2 LINE L2 3242 3308 -5 2133 153 59 50 chr4 9056973 9057204 -175231458 + MSTA LTR MaLR 1 239 -189 2249 96 0 0 chr4 9057204 9057496 -175231166 + AluSp SINE Alu 1 292 -21 2133 153 59 50 chr4 9057496 9057688 -175230974 + MSTA LTR MaLR 239 428 0 2415 93 101 25 chr4 9057996 9058394 -175230268 - MSTA LTR MaLR 0 428 1 2662 140 56 22 chr4 9060749 9060884 -175227778 + MER4C LTR ERV1 1 130 -335 1441 138 109 4 chr4 9060884 9061159 -175227503 + AluJb SINE Alu 1 304 -8 2662 140 56 22 chr4 9061159 9061473 -175227189 + MER4C LTR ERV1 130 465 0 367 301 48 14 chr4 9061481 9061627 -175227035 - MIR SINE MIR -56 206 56 2133 87 7 3 chr4 9061654 9061943 -175226719 - AluSx SINE Alu -20 292 3 596 231 162 23 chr4 9061990 9062206 -175226456 + MIR SINE MIR 13 258 -4 379 199 202 17 chr4 9062594 9062729 -175225933 + AluSq SINE Alu 107 255 -48 1338 168 75 4 chr4 9062792 9063060 -175225602 + AluJo SINE Alu 2 288 -24 7305 129 38 26 chr4 9063062 9063271 -175225391 + HSMAR2 DNA Mariner 45 250 -1052 2225 96 0 10 chr4 9063271 9063573 -175225089 - AluSc SINE Alu -10 299 1 7305 129 38 26 chr4 9063573 9064606 -175224056 + HSMAR2 DNA Mariner 250 1301 -1 231 204 0 0 chr4 9066035 9066089 -175222573 + (CA)n Simple_repeat Simple_repeat 2 55 0 268 236 97 0 chr4 9068174 9068246 -175220416 - L2 LINE L2 -1 3312 3234 610 302 14 51 chr4 9069282 9069497 -175219165 + MIR SINE MIR 1 207 -55 308 347 75 17 chr4 9069495 9069789 -175218873 - L2 LINE L2 -618 2696 2386 * 251 0 0 0 chr4 9069907 9069935 -175218727 + MLT2A2 LTR ERVL 4 31 -422 2530 65 32 9 chr4 9069937 9070275 -175218387 + HERVL LTR ERVL 5113 5458 -196 420 67 0 0 chr4 9070275 9070335 -175218327 + (TATG)n Simple_repeat Simple_repeat 1 60 0 1810 104 0 0 chr4 9070335 9070575 -175218087 - AluSx SINE Alu -33 279 40 402 276 111 50 chr4 9073952 9074133 -175214529 + MIR SINE MIR 20 211 -51 986 213 43 14 chr4 9074136 9074343 -175214319 + MIR SINE MIR 7 219 -43 1141 211 72 7 chr4 9074860 9075164 -175213498 - MER33 DNA MER1_type 0 324 1 1966 128 40 0 chr4 9075415 9075711 -175212951 - AluSx SINE Alu -4 308 1 198 273 18 0 chr4 9075732 9075787 -175212875 + MIR SINE MIR 159 214 -48 189 183 183 14 chr4 9075786 9075857 -175212805 - L3 LINE CR1 -880 697 615 * 186 294 272 11 chr4 9075829 9075921 -175212741 + L2 LINE L2 3149 3264 -8 * 3496 36 11 27 chr4 9078475 9078916 -175209746 + MLT2A1 LTR ERVL 11 444 0 199 299 0 30 chr4 9079001 9079068 -175209594 - L2 LINE L2 -76 3196 3132 414 236 149 43 chr4 9080321 9080482 -175208180 - MER5B DNA MER1_type 0 178 1 529 335 62 0 chr4 9080938 9081132 -175207530 + MIR SINE MIR 27 232 -30 276 240 250 42 chr4 9081549 9081741 -175206921 - MIR SINE MIR -29 233 2 268 290 20 10 chr4 9081871 9081971 -175206691 + L2 LINE L2 2787 2887 -427 222 262 98 0 chr4 9082105 9082166 -175206496 + L2 LINE L2 3209 3275 -38 213 258 86 43 chr4 9082246 9082339 -175206323 + MIR SINE MIR 85 181 -81 320 261 118 25 chr4 9083085 9083204 -175205458 + MIR3 SINE MIR 47 176 -32 341 333 40 0 chr4 9084462 9084588 -175204074 + L2 LINE L2 3133 3263 -9 1873 158 0 3 chr4 9084893 9085203 -175203459 - AluJb SINE Alu -3 309 1 2130 114 3 0 chr4 9085536 9085833 -175202829 - AluSx SINE Alu -14 298 1 293 293 132 9 chr4 9087252 9087358 -175201304 + L2 LINE L2 3153 3271 -1 181 213 40 67 chr4 9087455 9087530 -175201132 + L2 LINE L2 3162 3234 -79 510 318 95 37 chr4 9087758 9088085 -175200577 + L2 LINE L2 2967 3312 -1 204 269 141 0 chr4 9088496 9088574 -175200088 + MIR SINE MIR 84 172 -90 230 277 256 15 chr4 9088978 9089115 -175199547 + L2 LINE L2 2926 3095 -177 267 253 0 25 chr4 9089169 9089248 -175199414 + L1ME LINE L1 5743 5819 -302 277 336 118 8 chr4 9089489 9089608 -175199054 + L2 LINE L2 3133 3264 -8 2299 90 0 3 chr4 9090753 9091063 -175197599 + AluSx SINE Alu 1 309 -3 2271 99 3 0 chr4 9091594 9091897 -175196765 - AluSx SINE Alu -8 304 1 2436 62 3 0 chr4 9093462 9093771 -175194891 + AluY SINE Alu 1 310 -1 253 269 90 27 chr4 9094475 9094698 -175193964 - L1ME4a LINE L1 -23 6098 5862 757 158 267 0 chr4 9094723 9094888 -175193774 - MER3 DNA MER1_type 0 209 1 318 192 96 0 chr4 9095277 9095350 -175193312 - MLT1I LTR MaLR -7 402 323 225 0 0 0 chr4 9095350 9095375 -175193287 + (A)n Simple_repeat Simple_repeat 1 25 0 1785 159 0 7 chr4 9095378 9095679 -175192983 + AluJb SINE Alu 1 299 -13 279 140 70 18 chr4 9095680 9095737 -175192925 - L1MA4A LINE L1 -36 6267 6208 6560 166 8 26 chr4 9095739 9097559 -175191103 - L1MA4A LINE L1 -391 5912 4125 674 291 42 42 chr4 9097559 9097820 -175190842 - MLT1I LTR MaLR -70 339 79 181 368 11 23 chr4 9098446 9098533 -175190129 - L2 LINE L2 0 3272 3187 2045 122 20 0 chr4 9099037 9099331 -175189331 - AluSx SINE Alu -12 300 1 592 266 0 0 chr4 9099924 9100038 -175188624 + FLAM_A SINE Alu 1 117 -185 492 62 0 0 chr4 9100038 9100102 -175188560 + (TAGA)n Simple_repeat Simple_repeat 1 64 0 592 266 0 0 chr4 9100102 9100115 -175188547 + FLAM_A SINE Alu 116 128 -174 2292 82 0 13 chr4 9100356 9100662 -175188000 - AluY SINE Alu -1 310 9 325 193 44 104 chr4 9101115 9101250 -175187412 + L1M3c LINE L1 1191 1317 -4824 346 180 120 60 chr4 9102069 9102169 -175186493 + MER103 DNA DNA 15 120 -46 180 0 0 0 chr4 9102173 9102193 -175186469 + (TTCA)n Simple_repeat Simple_repeat 3 22 0 216 0 0 0 chr4 9103894 9103918 -175184744 + (TA)n Simple_repeat Simple_repeat 2 25 0 1277 197 0 86 chr4 9103931 9104246 -175184416 - AluJo SINE Alu -13 289 2 571 243 223 59 chr4 9104747 9105084 -175183578 + LTR16A LTR ERVL 59 450 0 1519 176 59 3 chr4 9105427 9105716 -175182946 - AluJo SINE Alu -7 305 1 971 155 67 21 chr4 9105805 9105999 -175182663 - MER3 DNA MER1_type 0 209 7 2125 111 3 0 chr4 9106425 9106723 -175181939 - AluSx SINE Alu -13 299 1 2056 102 0 0 chr4 9106794 9107099 -175181563 + AluSx SINE Alu 30 334 0 2153 96 0 0 chr4 9107135 9107438 -175181224 + AluSc SINE Alu 6 308 -1 1903 207 16 58 chr4 9107703 9108190 -175180472 + MLT1C LTR MaLR 1 467 0 1629 166 10 3 chr4 9108271 9108560 -175180102 + AluJo SINE Alu 1 291 -21 2200 68 44 0 chr4 9109037 9109333 -175179329 - AluYa5 SINE Alu -2 309 1 1908 129 13 20 chr4 9109333 9109635 -175179027 - AluJo SINE Alu -12 300 1 2050 137 0 0 chr4 9110581 9110881 -175177781 + AluSx SINE Alu 1 300 -12 641 267 165 43 chr4 9111049 9111178 -175177484 + L2 LINE L2 2028 2140 -1173 1121 161 79 57 chr4 9111178 9111232 -175177430 - MER33 DNA MER1_type -2261 324 273 1332 229 14 0 chr4 9111232 9111524 -175177138 + AluJo SINE Alu 1 296 -16 1121 161 79 57 chr4 9111524 9111751 -175176911 - MER33 DNA MER1_type -2312 273 32 2101 95 0 7 chr4 9111751 9112056 -175176606 + AluY SINE Alu 1 303 0 1121 161 79 57 chr4 9112056 9112088 -175176574 - MER33 DNA MER1_type -2553 32 2 641 267 165 43 chr4 9112088 9112647 -175176015 + L2 LINE L2 2140 3191 -122 945 273 86 19 chr4 9112682 9113096 -175175566 + LTR16B LTR ERVL 11 438 -26 209 265 0 0 chr4 9113096 9113145 -175175517 + L2 LINE L2 3265 3313 0 463 337 28 29 chr4 9113150 9113402 -175175260 + MIR SINE MIR 3 256 -6 200 98 0 49 chr4 9113926 9113967 -175174695 + (TTAA)n Simple_repeat Simple_repeat 1 39 0 514 207 140 61 chr4 9114062 9114137 -175174525 - MER45A DNA AcHobo -1404 177 109 2307 76 13 3 chr4 9114137 9114441 -175174221 + AluY SINE Alu 1 307 -4 514 207 140 61 chr4 9114441 9114529 -175174133 - MER45A DNA AcHobo -1472 109 1 342 240 116 29 chr4 9114759 9114906 -175173756 + L1ME LINE L1 5660 5819 -302 2338 112 45 25 chr4 9114946 9115303 -175173359 - THE1B LTR MaLR 0 364 1 1994 148 0 10 chr4 9115496 9115807 -175172855 + AluJb SINE Alu 3 310 -2 2050 112 10 3 chr4 9115904 9116207 -175172455 + AluSx SINE Alu 1 305 -7 1725 148 41 7 chr4 9116439 9116730 -175171932 + AluJb SINE Alu 2 302 -10 35 0 0 0 chr4 9116734 9116769 -175171893 + AT_rich Low_complexity Low_complexity 1 35 0 1983 125 7 7 chr4 9117081 9117376 -175171286 - AluJb SINE Alu -17 295 1 2067 116 3 3 chr4 9117551 9117852 -175170810 + AluSg SINE Alu 1 301 -9 2311 80 0 3 chr4 9117852 9118164 -175170498 + AluY SINE Alu 1 311 0 315 274 60 0 chr4 9118289 9118373 -175170289 - MIR SINE MIR -2 260 172 1414 180 74 0 chr4 9118805 9119089 -175169573 + AluJb SINE Alu 1 305 -7 2318 73 7 0 chr4 9119921 9120222 -175168440 - AluSc SINE Alu -6 303 1 1773 136 7 27 chr4 9120521 9120816 -175167846 + AluJo SINE Alu 7 295 -17 27 29 0 0 chr4 9120845 9120879 -175167783 + AT_rich Low_complexity Low_complexity 1 34 0 360 346 104 37 chr4 9120937 9121521 -175167141 - L2 LINE L2 -17 3255 2626 288 350 36 0 chr4 9121601 9121738 -175166924 - MIR SINE MIR -57 205 64 2078 77 20 13 chr4 9121886 9122185 -175166477 + AluY SINE Alu 1 301 -10 1003 192 0 16 chr4 9123446 9123628 -175165034 - MLT1B LTR MaLR 0 390 212 2016 110 7 0 chr4 9123637 9123928 -175164734 - AluSx SINE Alu -19 293 1 592 136 31 117 chr4 9123929 9124091 -175164571 - L1MB5 LINE L1 -345 5829 5682 360 295 67 35 chr4 9124091 9124345 -175164317 - L1M4 LINE L1 -981 5165 4904 1924 86 61 4 chr4 9124367 9124647 -175164015 - AluSc SINE Alu -6 303 8 386 299 82 25 chr4 9124671 9124915 -175163747 - L1M4 LINE L1 -1248 4898 4641 1243 178 5 0 chr4 9124943 9125156 -175163506 - AluJb SINE Alu -98 214 1 1834 162 0 10 chr4 9125166 9125474 -175163188 - AluJo SINE Alu -7 305 1 21 0 0 0 chr4 9125660 9125681 -175162981 + AT_rich Low_complexity Low_complexity 1 21 0 1515 199 156 13 chr4 9125709 9126107 -175162555 + MLT1C LTR MaLR 6 460 -7 330 283 87 60 chr4 9126125 9126309 -175162353 - L1M4 LINE L1 -1744 4402 4214 2367 130 77 70 chr4 9126320 9126547 -175162115 - MER66B LTR ERV1 0 486 262 2072 117 3 7 chr4 9126547 9126845 -175161817 + AluSx SINE Alu 2 298 -14 1997 123 3 7 chr4 9126847 9127149 -175161513 + AluSg SINE Alu 3 303 -7 2367 130 77 70 chr4 9127149 9127401 -175161261 - MER66B LTR ERV1 -224 262 1 527 211 83 0 chr4 9127469 9127578 -175161084 + MLT1F1 LTR MaLR 13 130 -437 1540 153 11 28 chr4 9127905 9128187 -175160475 + AluJb SINE Alu 36 312 0 2442 65 0 0 chr4 9128200 9128506 -175160156 + AluY SINE Alu 1 306 -5 284 202 35 123 chr4 9128882 9128996 -175159666 + LTR16B LTR ERVL 19 122 -342 207 352 101 48 chr4 9129179 9129617 -175159045 + L2 LINE L2 361 821 -2493 230 258 212 61 chr4 9129629 9129761 -175158901 + MIR SINE MIR 101 252 -10 261 333 157 12 chr4 9129864 9130113 -175158549 + L2 LINE L2 844 1128 -2186 186 357 88 39 chr4 9130124 9130407 -175158255 - L2 LINE L2 -2861 453 157 2425 67 100 0 chr4 9130428 9130769 -175157893 - THE1C LTR MaLR 0 375 1 1226 255 101 13 chr4 9131129 9131505 -175157157 - MLT1I LTR MaLR 0 409 1 1744 130 0 4 chr4 9131558 9131848 -175156814 + AluSx SINE Alu 22 310 0 382 257 146 35 chr4 9132079 9132250 -175156412 + L1MC4a LINE L1 5754 5943 -1865 624 212 0 8 chr4 9132256 9132388 -175156274 + FLAM_C SINE Alu 1 131 -2 1122 159 50 50 chr4 9132416 9132674 -175155988 + AluJb SINE Alu 42 299 -13 547 151 162 12 chr4 9132822 9132951 -175155711 + L1MD3 LINE L1 7694 7870 -125 1226 262 78 27 chr4 9133235 9133647 -175155015 - LTR16A LTR ERVL -10 440 8 1842 132 20 0 chr4 9136356 9136659 -175152003 + AluSx SINE Alu 3 311 -1 2441 71 0 0 chr4 9136774 9137085 -175151577 - AluY SINE Alu 0 311 1 858 186 6 6 chr4 9137111 9137272 -175151390 - FRAM SINE Alu -5 161 1 1852 107 126 69 chr4 9137816 9138332 -175150330 + MER4A LTR ERV1 1 624 -40 13386 27 1 1 chr4 9138332 9140659 -175148003 - L1PA3 LINE L1 0 6155 3828 1852 107 126 69 chr4 9140659 9140703 -175147959 + MER4A LTR ERV1 624 664 0 4897 161 36 7 chr4 9140763 9141623 -175147039 + L1MC1 LINE L1 5429 6313 -20 558 226 77 70 chr4 9141807 9141847 -175146815 - L1M4 LINE L1 -2952 3194 3156 2001 132 7 0 chr4 9141847 9142143 -175146519 - AluSx SINE Alu -14 298 1 558 226 77 70 chr4 9142143 9142412 -175146250 - L1M4 LINE L1 -2990 3156 2879 2092 101 26 13 chr4 9142412 9142720 -175145942 + AluSq SINE Alu 1 312 -1 558 226 77 70 chr4 9142720 9142812 -175145850 - L1M4 LINE L1 -3267 2879 2789 2297 155 89 33 chr4 9143562 9143794 -175144868 + MER66B LTR ERV1 4 222 -264 2030 122 0 3 chr4 9143794 9144088 -175144574 + AluSx SINE Alu 1 293 -19 2297 155 89 33 chr4 9144088 9144306 -175144356 + MER66B LTR ERV1 222 479 -7 988 228 5 9 chr4 9144395 9144610 -175144052 + MLT1A2 LTR MaLR 1 214 -160 3637 121 6 0 chr4 9144610 9145115 -175143547 - LTR31 LTR ERV1 0 619 112 800 235 0 0 chr4 9145115 9145281 -175143381 + FRAM SINE Alu 1 166 -10 674 115 74 25 chr4 9145281 9145403 -175143259 - LTR31 LTR ERV1 -491 128 1 694 269 0 0 chr4 9145446 9145602 -175143060 + MLT1A2 LTR MaLR 215 370 -4 2383 73 0 13 chr4 9146133 9146447 -175142215 + AluY SINE Alu 1 310 -1 726 233 43 67 chr4 9146615 9146654 -175142008 - MLT1H1 LTR MaLR 0 555 517 1709 164 3 7 chr4 9146654 9146947 -175141715 - AluJb SINE Alu -20 292 1 726 233 43 67 chr4 9146947 9147160 -175141502 - MLT1H1 LTR MaLR -38 517 309 266 328 76 0 chr4 9147219 9147338 -175141324 - MLT1J LTR MaLR -383 128 1 23 0 0 0 chr4 9147480 9147503 -175141159 + AT_rich Low_complexity Low_complexity 1 23 0 532 131 9 9 chr4 9147771 9147878 -175140784 + (TTCCC)n Simple_repeat Simple_repeat 4 110 0 1836 152 16 10 chr4 9147880 9148190 -175140472 - AluJb SINE Alu 0 312 1 313 195 65 0 chr4 9148259 9148336 -175140326 - L1ME3A LINE L1 -220 5950 5869 293 19 74 0 chr4 9148338 9148392 -175140270 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 916 276 59 55 chr4 9148409 9148468 -175140194 - L1ME3A LINE L1 -310 5860 5803 878 250 5 0 chr4 9148468 9148656 -175140006 - MER5A DNA MER1_type 0 189 1 916 276 59 55 chr4 9148656 9148793 -175139869 - L1ME3A LINE L1 -367 5803 5668 1833 117 0 87 chr4 9148793 9148969 -175139693 - AluSx SINE Alu -8 304 114 228 86 0 0 chr4 9148969 9149004 -175139658 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2391 46 0 0 chr4 9149004 9149288 -175139374 - AluY SINE Alu -27 284 1 1833 117 0 87 chr4 9149288 9149443 -175139219 - AluSx SINE Alu -196 116 1 916 276 59 55 chr4 9149443 9149734 -175138928 - L1ME3A LINE L1 -502 5668 5370 2330 64 3 3 chr4 9149872 9150167 -175138495 - AluSp SINE Alu -18 295 1 669 139 9 0 chr4 9150222 9150330 -175138332 + MLT1A1 LTR MaLR 1 109 -256 244 245 94 38 chr4 9150335 9150441 -175138221 - LTR38 LTR ERV1 0 556 445 1742 138 3 7 chr4 9150645 9150928 -175137734 - AluJb SINE Alu 0 312 31 996 184 16 5 chr4 9150997 9151187 -175137475 - AluJb SINE Alu -78 234 43 1160 172 40 9 chr4 9151389 9151587 -175137075 + MLT1A1 LTR MaLR 130 337 -28 1976 50 46 8 chr4 9151587 9151847 -175136815 - AluY SINE Alu -15 296 27 1160 172 40 9 chr4 9151847 9151875 -175136787 + MLT1A1 LTR MaLR 337 363 -2 207 0 0 0 chr4 9151883 9151906 -175136756 + (TG)n Simple_repeat Simple_repeat 2 24 0 2219 85 3 0 chr4 9151906 9152200 -175136462 - AluSp SINE Alu -18 295 1 906 134 8 0 chr4 9152200 9152334 -175136328 - AluSq/x SINE Alu -178 135 1 267 104 0 0 chr4 9152435 9152483 -175136179 + (A)n Simple_repeat Simple_repeat 1 48 0 1786 177 0 3 chr4 9152492 9152797 -175135865 + AluJo SINE Alu 8 311 -1 1701 179 10 0 chr4 9153040 9153337 -175135325 - AluJo SINE Alu -12 300 1 1789 109 58 20 chr4 9153344 9153637 -175135025 - AluSx SINE Alu -8 304 1 1988 128 10 0 chr4 9153977 9154273 -175134389 + AluSx SINE Alu 1 299 -13 2036 200 89 11 chr4 9154281 9154802 -175133860 - L1MB7 LINE L1 -19 6165 5601 183 42 0 0 chr4 9156015 9156039 -175132623 + (TCCC)n Simple_repeat Simple_repeat 1 24 0 200 365 31 0 chr4 9156039 9156135 -175132527 - L2 LINE L2 -1 3271 3173 243 346 98 0 chr4 9156896 9157049 -175131613 - MIR SINE MIR -36 226 59 199 292 46 46 chr4 9157660 9157725 -175130937 + MIR3 SINE MIR 111 175 -33 297 310 92 7 chr4 9158190 9158332 -175130330 - MIR SINE MIR -80 182 29 1608 175 3 30 chr4 9158442 9158563 -175130099 + AluSx SINE Alu 16 139 -173 2233 96 0 7 chr4 9158563 9158865 -175129797 + AluSp SINE Alu 1 300 -13 1608 175 3 30 chr4 9158865 9159040 -175129622 + AluSx SINE Alu 139 304 -8 2877 86 0 0 chr4 9159447 9159808 -175128854 + THE1B LTR MaLR 2 362 -2 373 252 89 0 chr4 9159812 9159935 -175128727 - MIR SINE MIR -91 171 38 388 185 33 0 chr4 9160039 9160131 -175128531 + MLT1I LTR MaLR 75 169 -240 337 284 35 0 chr4 9160216 9160332 -175128330 + MLT1I LTR MaLR 290 409 0 244 328 117 14 chr4 9160402 9160543 -175128119 - MIR SINE MIR -61 147 3 196 333 0 17 chr4 9160543 9160595 -175128067 + MER5B DNA MER1_type 76 126 -52 2140 122 0 0 chr4 9160609 9160905 -175127757 + AluSx SINE Alu 1 296 -16 1911 133 3 14 chr4 9160905 9161198 -175127464 - AluJo SINE Alu -22 290 1 884 168 0 31 chr4 9161434 9161595 -175127067 - AluJo SINE Alu -152 160 5 187 374 36 0 chr4 9161627 9161710 -175126952 - L2 LINE L2 -50 3222 3137 214 341 35 0 chr4 9161835 9161920 -175126742 + L2 LINE L2 3175 3262 -51 281 326 109 0 chr4 9162122 9162269 -175126393 + MIR3 SINE MIR 25 187 -21 254 302 71 8 chr4 9162691 9162817 -175125845 - MIR3 SINE MIR -10 198 65 725 132 36 18 chr4 9162832 9163057 -175125605 + CT-rich Low_complexity Low_complexity 1 229 0 318 233 0 0 chr4 9163059 9163119 -175125543 + C-rich Low_complexity Low_complexity 3 62 0 1569 171 59 14 chr4 9163119 9163406 -175125256 - AluJo SINE Alu -12 300 1 420 271 104 70 chr4 9163546 9163929 -175124733 + MLT1K LTR MaLR 185 580 -8 287 279 93 0 chr4 9164456 9164542 -175124120 + L2 LINE L2 3179 3272 0 1092 129 0 45 chr4 9164898 9165076 -175123586 - AluSg/x SINE Alu -9 301 132 474 229 76 0 chr4 9165211 9165329 -175123333 + MIR3 SINE MIR 58 184 -24 212 284 25 25 chr4 9165930 9166011 -175122651 + MIR SINE MIR 1 81 -181 344 260 199 22 chr4 9166034 9166215 -175122447 - MIR SINE MIR -37 225 13 2306 94 0 0 chr4 9166256 9166555 -175122107 + AluSx SINE Alu 1 299 -13 387 335 62 6 chr4 9168004 9168180 -175120482 - MIR SINE MIR -55 207 22 4405 161 48 18 chr4 9168513 9169208 -175119454 + L1MB7 LINE L1 5183 5916 -268 1840 149 20 10 chr4 9169208 9169487 -175119175 + AluJb SINE Alu 1 285 -27 189 0 0 0 chr4 9169487 9169508 -175119154 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 1840 149 20 10 chr4 9169508 9169523 -175119139 + AluJb SINE Alu 285 298 -14 4405 161 48 18 chr4 9169523 9169792 -175118870 + L1MB7 LINE L1 5916 6175 -9 242 221 15 29 chr4 9170523 9170591 -175118071 + CT-rich Low_complexity Low_complexity 3 69 0 641 235 6 0 chr4 9170779 9170958 -175117704 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 233 256 0 0 chr4 9170962 9171005 -175117657 + (TGGG)n Simple_repeat Simple_repeat 2 44 0 190 286 0 0 chr4 9171007 9171056 -175117606 + MIR3 SINE MIR 139 187 -21 220 266 49 152 chr4 9171770 9171954 -175116708 - L3 LINE CR1 -236 1341 1177 195 311 73 0 chr4 9172488 9172639 -175116023 + L2 LINE L2 2812 2973 -299 590 279 29 17 chr4 9172962 9173134 -175115528 + L2 LINE L2 3136 3309 -4 205 313 31 0 chr4 9173353 9173417 -175115245 + L2 LINE L2 3207 3272 0 1912 161 0 19 chr4 9173737 9174048 -175114614 + AluJb SINE Alu 1 305 -7 1618 204 64 3 chr4 9174138 9174482 -175114180 + MLT1A1 LTR MaLR 1 365 0 439 214 0 31 chr4 9174901 9174999 -175113663 + MER21B LTR ERV1 1 95 -768 732 272 60 44 chr4 9175039 9175192 -175113470 + MER21B LTR ERV1 98 247 -616 2040 117 17 3 chr4 9175192 9175491 -175113171 - AluSq SINE Alu -10 303 1 732 272 60 44 chr4 9175491 9175812 -175112850 + MER21B LTR ERV1 247 785 -78 277 258 45 0 chr4 9175812 9175878 -175112784 + MIR SINE MIR 104 172 -90 350 171 29 0 chr4 9176383 9176453 -175112209 - MIR SINE MIR -118 144 73 189 313 40 30 chr4 9176612 9176711 -175111951 + L2 LINE L2 2873 2972 -341 2487 43 3 7 chr4 9177029 9177332 -175111330 - AluY SINE Alu -9 302 1 1597 145 3 35 chr4 9177338 9177621 -175111041 + AluJo SINE Alu 32 305 -7 248 242 264 22 chr4 9177693 9177784 -175110878 - MER81 DNA DNA -1 113 1 536 291 101 5 chr4 9177937 9178136 -175110526 + MIR SINE MIR 45 262 0 256 299 11 20 chr4 9178159 9178282 -175110380 - MIR SINE MIR -56 152 29 255 226 0 0 chr4 9178646 9178699 -175109963 - MIR SINE MIR -119 143 91 260 363 112 28 chr4 9178950 9179129 -175109533 - MIR SINE MIR -25 237 44 1557 208 103 3 chr4 9180966 9181326 -175107336 + MSTD LTR MaLR 1 396 0 237 300 187 27 chr4 9181326 9181476 -175107186 - MIR SINE MIR -14 248 75 228 282 190 14 chr4 9181590 9181732 -175106930 - L2 LINE L2 -188 3084 2918 1707 85 51 0 chr4 9182317 9182552 -175106110 - AluSq SINE Alu -66 247 1 35 41 0 0 chr4 9182597 9182646 -175106016 + AT_rich Low_complexity Low_complexity 1 49 0 717 289 32 56 chr4 9182707 9182956 -175105706 + MIR SINE MIR 16 258 -4 252 242 242 25 chr4 9182966 9183123 -175105539 - MIR SINE MIR -28 234 44 192 282 117 29 chr4 9183567 9183670 -175104992 + MIR SINE MIR 20 131 -131 996 180 0 14 chr4 9183762 9183973 -175104689 + MER96B DNA MER1_type? 4 211 -206 1620 147 56 0 chr4 9184100 9184366 -175104296 - AluJo SINE Alu -21 291 11 247 233 23 23 chr4 9184415 9184501 -175104161 + MIR SINE MIR 170 255 -7 187 262 16 16 chr4 9184572 9184633 -175104029 - MIR SINE MIR -171 91 31 561 292 70 11 chr4 9184680 9184865 -175103797 + MIR SINE MIR 46 241 -21 807 243 111 10 chr4 9185172 9185460 -175103202 + LTR53 LTR ERVL 196 512 -7 1954 152 10 0 chr4 9185549 9185846 -175102816 - AluSx SINE Alu -12 300 1 225 0 0 0 chr4 9186304 9186329 -175102333 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1894 119 0 48 chr4 9186329 9186623 -175102039 - AluSx SINE Alu -32 280 1 1651 162 45 10 chr4 9186625 9186915 -175101747 - AluJo SINE Alu -12 300 1 561 274 12 12 chr4 9186944 9187126 -175101536 + MIR SINE MIR 2 184 -56 2077 127 3 7 chr4 9187172 9187479 -175101183 + AluSq SINE Alu 1 306 -7 255 314 25 17 chr4 9187850 9187968 -175100694 - L3 LINE CR1 -37 1540 1422 1922 110 45 0 chr4 9187980 9188270 -175100392 - AluSx SINE Alu -5 307 5 1423 177 3 79 chr4 9188272 9188600 -175100062 + MLT1B LTR MaLR 80 382 -8 2117 118 0 16 chr4 9188653 9188968 -175099694 + AluSx SINE Alu 1 310 -2 205 191 0 0 chr4 9188981 9189023 -175099639 + A-rich Low_complexity Low_complexity 1 42 0 1734 199 36 3 chr4 9189880 9190216 -175098446 - L1MB3 LINE L1 -3 6180 5834 1965 123 0 39 chr4 9190363 9190672 -175097990 + AluJo SINE Alu 12 308 -4 1085 238 199 24 chr4 9190672 9191139 -175097523 + MLT1F1 LTR MaLR 19 567 0 213 360 48 20 chr4 9191254 9191401 -175097261 - MIR SINE MIR -32 230 80 240 316 0 13 chr4 9191857 9191933 -175096729 + MLT1L LTR MaLR 120 194 -421 802 218 12 1 chr4 9191960 9192285 -175096377 + MER93b LTR ERV1 1 365 -8 277 250 52 86 chr4 9192314 9192430 -175096232 + MLT1L LTR MaLR 236 392 -164 2303 207 105 18 chr4 9192501 9193168 -175095494 + MER50 LTR ERV1 10 734 0 543 246 5 64 chr4 9193229 9193416 -175095246 + MLT1J LTR MaLR 3 178 -333 629 236 65 91 chr4 9193416 9193814 -175094848 + MLT1J2 LTR MaLR 63 450 0 319 119 34 0 chr4 9193966 9194025 -175094637 + FLAM_A SINE Alu 64 124 -9 2013 124 0 3 chr4 9194073 9194394 -175094268 + AluSx SINE Alu 1 320 0 421 307 67 32 chr4 9195258 9195447 -175093215 + MIR SINE MIR 20 219 -43 214 315 99 43 chr4 9195497 9195659 -175093003 + MIR SINE MIR 48 218 -44 310 304 105 49 chr4 9196685 9196892 -175091770 + MIR3 SINE MIR 12 221 -41 429 226 0 32 chr4 9196944 9197130 -175091532 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 * 699 164 0 48 chr4 9197128 9197317 -175091345 + (TGG)n Simple_repeat Simple_repeat 1 180 0 1163 87 0 22 chr4 9197333 9197517 -175091145 + (TGG)n Simple_repeat Simple_repeat 1 180 0 1251 116 0 0 chr4 9197529 9197761 -175090901 + (TGG)n Simple_repeat Simple_repeat 1 232 0 802 281 54 4 chr4 9197804 9198046 -175090616 - MIR SINE MIR -6 256 3 219 337 31 31 chr4 9198441 9198539 -175090123 + L2 LINE L2 3203 3300 -13 260 270 36 22 chr4 9198559 9198696 -175089966 - L1MC4 LINE L1 -1 8041 7903 539 225 9 9 chr4 9198797 9198908 -175089754 - L2 LINE L2 -2 3311 3201 330 261 61 17 chr4 9199050 9199165 -175089497 + MIR SINE MIR 33 152 -110 324 203 158 40 chr4 9199622 9199799 -175088863 - MER102a DNA MER1_type -25 305 108 341 243 180 9 chr4 9200712 9200823 -175087839 + MIR3 SINE MIR 14 143 -65 262 243 14 48 chr4 9200841 9200924 -175087738 - MIR SINE MIR -59 149 69 322 298 0 66 chr4 9201143 9201264 -175087398 - MIR3 SINE MIR -54 154 42 28 29 0 0 chr4 9201551 9201586 -175087076 + GC_rich Low_complexity Low_complexity 1 35 0 1755 155 3 7 chr4 9202056 9202352 -175086310 - AluJb SINE Alu -17 295 1 290 279 70 0 chr4 9202354 9202440 -175086222 - MIR SINE MIR -112 150 59 204 200 20 0 chr4 9202453 9202503 -175086159 + MIR SINE MIR 74 124 -138 813 258 163 18 chr4 9202919 9203256 -175085406 + MLT1J2 LTR MaLR 20 405 -45 786 205 83 122 chr4 9203281 9203350 -175085312 + MLT1G LTR MaLR 3 73 -522 5725 104 47 16 chr4 9203350 9204225 -175084437 - MER4D LTR ERV1 -1 902 1 786 205 83 122 chr4 9204225 9204298 -175084364 + MLT1G LTR MaLR 73 147 -448 1433 206 0 44 chr4 9204298 9204619 -175084043 - AluJo SINE Alu -1 311 5 667 175 108 0 chr4 9204626 9204746 -175083916 - FLAM_C SINE Alu 0 133 1 786 205 83 122 chr4 9204746 9204946 -175083716 + MLT1G LTR MaLR 153 309 -286 1105 367 43 11 chr4 9205088 9205885 -175082777 - HERV16 LTR ERVL -395 5369 4509 951 224 76 27 chr4 9205890 9206193 -175082469 + MLT1F LTR MaLR 199 497 -45 935 275 42 0 chr4 9206195 9206435 -175082227 - HERV16 LTR ERVL -3060 1936 1687 903 110 24 12 chr4 9206508 9206672 -175081990 + CT-rich Low_complexity Low_complexity 1 166 0 588 136 32 26 chr4 9206711 9206865 -175081797 + CT-rich Low_complexity Low_complexity 1 155 0 1958 124 16 22 chr4 9206865 9207356 -175081306 - AluSq SINE Alu 0 313 1 507 319 165 19 chr4 9207361 9207725 -175080937 - HERV16 LTR ERVL -3456 1540 1124 1206 225 62 37 chr4 9207799 9208245 -175080417 - MLT1B LTR MaLR 0 390 1 800 320 57 30 chr4 9208286 9208724 -175079938 - HERV16 LTR ERVL -4077 919 470 2198 98 0 3 chr4 9208754 9209049 -175079613 - AluSq SINE Alu -7 306 13 402 75 0 0 chr4 9209061 9209114 -175079548 - MSTB LTR MaLR -373 53 1 1582 254 67 22 chr4 9209157 9209750 -175078912 - L2 LINE L2 -231 3082 2458 235 267 59 20 chr4 9210927 9211028 -175077634 + L2 LINE L2 2911 3015 -257 231 235 59 0 chr4 9211422 9211490 -175077172 + MIR SINE MIR 117 188 -74 220 241 149 0 chr4 9212458 9212545 -175076117 + MIR SINE MIR 48 147 -115 306 188 0 79 chr4 9212646 9212811 -175075851 + C-rich Low_complexity Low_complexity 6 157 0 23 33 0 0 chr4 9212830 9212860 -175075802 + GC_rich Low_complexity Low_complexity 1 30 0 28 29 0 0 chr4 9212892 9212927 -175075735 + GC_rich Low_complexity Low_complexity 1 35 0 205 243 19 39 chr4 9212995 9213098 -175075564 + C-rich Low_complexity Low_complexity 4 104 0 225 221 13 39 chr4 9213174 9213251 -175075411 + (CCCCG)n Simple_repeat Simple_repeat 4 78 0 460 276 35 52 chr4 9213880 9214054 -175074608 + MIR SINE MIR 22 192 -70 496 129 24 0 chr4 9214268 9214353 -175074309 - MIR SINE MIR -112 150 64 255 250 0 0 chr4 9214980 9215096 -175073566 + (TG)n Simple_repeat Simple_repeat 2 117 0 1930 243 118 21 chr4 9215256 9216040 -175072622 - MER45C DNA AcHobo 0 953 6 505 297 88 0 chr4 9216084 9216266 -175072396 - MIR SINE MIR 0 262 65 1766 179 82 9 chr4 9216805 9217145 -175071517 - MLT1A1 LTR MaLR 0 365 1 329 0 0 24 chr4 9217283 9217325 -175071337 + (TG)n Simple_repeat Simple_repeat 2 42 0 330 267 145 35 chr4 9217335 9217544 -175071118 - MIR SINE MIR -6 256 38 302 271 138 9 chr4 9219038 9219248 -175069414 + L2 LINE L2 2832 3068 -245 192 77 0 0 chr4 9219308 9219334 -175069328 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 425 307 84 18 chr4 9219655 9219880 -175068782 + LTR33 LTR ERVL 10 249 -272 1171 323 62 13 chr4 9219921 9220141 -175068521 + HERVL LTR ERVL 3747 3955 -1699 1918 202 146 17 chr4 9220141 9220601 -175068061 - MLT2B1 LTR ERVL 0 520 2 1171 323 62 13 chr4 9220601 9220916 -175067746 + HERVL LTR ERVL 3955 4308 -1346 341 232 24 0 chr4 9221311 9221393 -175067269 + MER94 DNA DNA 1 84 -50 1041 176 129 24 chr4 9221434 9221708 -175066954 + MLT1A1 LTR MaLR 6 341 -55 2239 119 0 0 chr4 9221708 9222137 -175066525 - AluSx SINE Alu 0 429 1 400 187 27 0 chr4 9222138 9222213 -175066449 + MLT1A1 LTR MaLR 288 364 -1 * 2053 205 34 18 chr4 9222213 9222654 -175066008 - MLT1C LTR MaLR -19 448 1 411 340 80 4 chr4 9222659 9222897 -175065765 + HERVL LTR ERVL 4828 5083 -681 411 283 121 53 chr4 9223334 9223656 -175065006 + LTR33 LTR ERVL 1 344 -177 183 348 174 0 chr4 9223814 9223929 -175064733 + MIR SINE MIR 47 181 -81 2574 120 10 135 chr4 9223929 9224506 -175064156 + MLT1D LTR MaLR 1 505 0 1761 271 34 6 chr4 9224746 9225252 -175063410 - MLT1H1 LTR MaLR -3 552 33 212 260 110 0 chr4 9225364 9225437 -175063225 - L2 LINE L2 -1 3312 3232 474 344 54 0 chr4 9225457 9225681 -175062981 - MIR SINE MIR -19 243 8 1507 176 7 46 chr4 9225769 9226076 -175062586 + AluJo SINE Alu 1 295 -17 232 293 51 32 chr4 9226198 9226355 -175062307 - L2 LINE L2 -336 2977 2818 298 327 9 9 chr4 9226515 9226622 -175062040 - MIR SINE MIR -56 152 46 199 277 158 71 chr4 9226895 9227079 -175061583 - MIR SINE MIR 0 262 63 356 212 189 15 chr4 9227206 9227338 -175061324 + L2 LINE L2 2918 3072 -241 438 259 40 26 chr4 9227352 9227603 -175061059 - L2 LINE L2 -328 2944 2580 226 341 47 0 chr4 9227638 9227723 -175060939 - L2 LINE L2 -4 3268 3180 426 321 114 25 chr4 9227825 9228199 -175060463 + LTR16A LTR ERVL 13 436 -28 260 307 40 10 chr4 9228210 9228311 -175060351 - L1MC/D LINE L1 -766 5578 5475 400 174 0 83 chr4 9228427 9228465 -175060197 - L1MC/D LINE L1 -771 5471 5431 2114 109 0 0 chr4 9228465 9228779 -175059883 - AluSx SINE Alu 0 314 1 400 174 0 83 chr4 9228779 9228848 -175059814 - L1MC/D LINE L1 -811 5431 5372 547 270 20 0 chr4 9228851 9229003 -175059659 - L1MC/D LINE L1 -1102 5044 4890 389 308 89 16 chr4 9229354 9229601 -175059061 + L1MC4 LINE L1 7707 7971 -71 221 309 0 0 chr4 9229764 9229819 -175058843 + CT-rich Low_complexity Low_complexity 3 57 0 519 279 7 15 chr4 9230168 9230304 -175058358 + MIR SINE MIR 66 200 -62 267 367 7 43 chr4 9230880 9231019 -175057643 - MIR SINE MIR -74 188 55 276 275 46 37 chr4 9231050 9231159 -175057503 - MIR SINE MIR -66 142 33 21 0 0 0 chr4 9231743 9231764 -175056898 + AT_rich Low_complexity Low_complexity 1 21 0 1864 143 20 0 chr4 9232078 9232372 -175056290 + AluJo SINE Alu 1 300 -12 242 276 41 20 chr4 9232479 9232577 -175056085 - MLT1J LTR MaLR -90 421 322 1078 93 0 0 chr4 9233135 9233274 -175055388 - AluSg SINE Alu -171 139 1 524 313 60 19 chr4 9233341 9233609 -175055053 - LTR16A LTR ERVL -7 443 165 271 248 88 29 chr4 9233888 9233984 -175054678 - L1MC/D LINE L1 -2689 3457 3349 2023 104 6 31 chr4 9233984 9234302 -175054360 - AluSx SINE Alu -2 310 1 271 248 88 29 chr4 9234302 9234342 -175054320 - L1MC/D LINE L1 -2797 3349 3313 222 226 19 0 chr4 9234518 9234571 -175054091 + MIR SINE MIR 79 132 -76 188 300 57 43 chr4 9234708 9234778 -175053884 + L2 LINE L2 3242 3312 -1 1890 127 58 0 chr4 9234885 9235176 -175053486 + AluSx SINE Alu 1 308 -4 234 0 0 0 chr4 9235311 9235337 -175053325 + (TTAA)n Simple_repeat Simple_repeat 4 29 0 868 303 50 54 chr4 9235415 9235838 -175052824 + MLT1J LTR MaLR 13 433 -78 3941 157 18 17 chr4 9236005 9236662 -175052000 + L1MB7 LINE L1 5520 6177 -7 225 328 64 8 chr4 9236813 9236938 -175051724 + MIR SINE MIR 51 182 -80 2145 186 23 49 chr4 9237260 9237733 -175050929 - MLT1C LTR MaLR 0 467 7 221 232 195 0 chr4 9237799 9237881 -175050781 - L2 LINE L2 -17 3296 3199 242 311 17 3 chr4 9238438 9238563 -175050099 + MIR SINE MIR 48 212 -50 1907 145 86 17 chr4 9238574 9238865 -175049797 - L1MB3 LINE L1 -2 6181 5859 2376 82 0 0 chr4 9238865 9239170 -175049492 + AluY SINE Alu 1 305 -6 1907 145 86 17 chr4 9239170 9239237 -175049425 - L1MB3 LINE L1 -324 5859 5798 228 275 103 101 chr4 9239465 9239495 -175049167 - L1MC/D LINE L1 -1916 5892 5864 2250 97 0 0 chr4 9239495 9239794 -175048868 - AluSx SINE Alu -13 299 1 228 275 103 101 chr4 9239794 9240395 -175048267 - L1MC/D LINE L1 -1944 5864 5260 251 119 0 0 chr4 9240794 9240836 -175047826 - L2 LINE L2 -219 3053 3012 217 261 31 0 chr4 9241089 9241154 -175047508 - MIR SINE MIR -83 179 113 201 260 30 50 chr4 9241568 9241668 -175046994 + C-rich Low_complexity Low_complexity 2 99 0 198 302 47 0 chr4 9241764 9241850 -175046812 - L2 LINE L2 -1 3271 3182 385 239 16 6 chr4 9242024 9242345 -175046317 + (TG)n Simple_repeat Simple_repeat 1 324 0 233 254 0 0 chr4 9242373 9242440 -175046222 + (TG)n Simple_repeat Simple_repeat 2 68 0 447 216 8 36 chr4 9242461 9242836 -175045826 + (TG)n Simple_repeat Simple_repeat 1 364 0 210 191 149 0 chr4 9243982 9244029 -175044633 - L2 LINE L2 -2 3311 3258 279 311 67 8 chr4 9244218 9244337 -175044325 - MIR SINE MIR -74 188 63 243 0 0 0 chr4 9244899 9244926 -175043736 + (CA)n Simple_repeat Simple_repeat 2 28 0 766 305 59 25 chr4 9245184 9245538 -175043124 + L2 LINE L2 2920 3285 -28 415 272 19 0 chr4 9246148 9246251 -175042411 + MIR3 SINE MIR 82 186 -22 198 0 0 0 chr4 9246255 9246277 -175042385 + (TG)n Simple_repeat Simple_repeat 1 22 0 337 324 75 23 chr4 9246376 9246549 -175042113 - MIR SINE MIR -24 238 57 586 221 139 19 chr4 9247126 9247284 -175041378 + MIR SINE MIR 73 249 -13 279 285 31 92 chr4 9247717 9247847 -175040815 + MIR SINE MIR 29 143 -65 604 289 38 30 chr4 9248317 9248348 -175040314 + L2 LINE L2 3077 3106 -207 1256 179 24 94 chr4 9248348 9248678 -175039984 - AluJo SINE Alu -1 311 5 604 289 38 30 chr4 9248678 9248881 -175039781 + L2 LINE L2 3106 3313 0 194 238 113 50 chr4 9249161 9249241 -175039421 + MIR3 SINE MIR 95 179 -29 203 333 26 39 chr4 9249705 9249858 -175038804 - MIR SINE MIR -84 178 28 * 226 352 69 21 chr4 9249856 9250001 -175038661 + L2 LINE L2 2899 3050 -222 222 302 0 0 chr4 9250395 9250448 -175038214 + L2 LINE L2 3213 3265 -7 271 310 136 19 chr4 9250578 9250733 -175037929 - MIR3 SINE MIR -21 187 15 265 469 40 6 chr4 9453901 9454076 -174834586 + MER5A DNA MER1_type 9 189 0 602 414 13 4 chr4 9455685 9455917 -174832745 + AluSp SINE Alu 2 235 -78 609 405 9 4 chr4 9458375 9458607 -174830055 + AluSg SINE Alu 64 296 -14 23 0 0 0 chr4 9458659 9458682 -174829980 + GC_rich Low_complexity Low_complexity 1 23 0 421 385 29 15 chr4 9459909 9460114 -174828548 - SVA Other Other -1045 341 134 198 0 0 0 chr4 9460211 9460233 -174828429 + (TAA)n Simple_repeat Simple_repeat 2 23 0 258 381 48 0 chr4 9460300 9460426 -174828236 + AluSq/x SINE Alu 2 133 -169 27 0 0 0 chr4 9461684 9461711 -174826951 + AT_rich Low_complexity Low_complexity 1 27 0 198 0 0 0 chr4 9462237 9462259 -174826403 + (CCG)n Simple_repeat Simple_repeat 2 23 0 681 338 90 63 chr4 9462677 9463278 -174825384 + L1M4 LINE L1 3676 4292 -1854 380 418 5 5 chr4 9463301 9463509 -174825153 + L1PA15 LINE L1 5807 6014 -151 23 0 0 0 chr4 9463788 9463811 -174824851 + AT_rich Low_complexity Low_complexity 1 23 0 474 461 11 7 chr4 9463878 9464158 -174824504 - AluSq SINE Alu -30 283 3 426 307 20 0 chr4 9465763 9465864 -174822798 - SVA Other Other -1091 295 193 354 373 75 0 chr4 9465864 9466025 -174822637 + FAM SINE Alu 1 173 -2 559 384 11 0 chr4 9467310 9467487 -174821175 - SVA Other Other -1076 310 132 301 298 53 0 chr4 9470394 9470488 -174818174 - L2 LINE L2 -1 3312 3214 269 279 0 0 chr4 9471365 9471444 -174817218 + A-rich Low_complexity Low_complexity 1 79 0 2418 102 0 9 chr4 9472622 9472937 -174815725 - AluSx SINE Alu 0 312 1 21 0 0 0 chr4 9472938 9472959 -174815703 + AT_rich Low_complexity Low_complexity 1 21 0 269 215 0 43 chr4 9473073 9473166 -174815496 + (TA)n Simple_repeat Simple_repeat 1 89 0 184 294 272 11 chr4 9476168 9476260 -174812402 - L2 LINE L2 -8 3264 3149 184 183 183 14 chr4 9476232 9476303 -174812359 + L3 LINE CR1 615 697 -880 * 198 273 18 0 chr4 9476302 9476357 -174812305 - MIR SINE MIR -48 214 159 2112 126 40 7 chr4 9476378 9476679 -174811983 + AluSx SINE Alu 1 311 -1 1147 211 72 7 chr4 9476923 9477227 -174811435 + MER33 DNA MER1_type 1 324 0 982 213 43 14 chr4 9477744 9477951 -174810711 - MIR SINE MIR -43 219 7 394 276 111 50 chr4 9477954 9478135 -174810527 - MIR SINE MIR -51 211 20 2425 99 3 0 chr4 9482005 9482308 -174806354 + AluSx SINE Alu 1 304 -8 2450 90 0 3 chr4 9482839 9483149 -174805513 - AluSx SINE Alu -3 309 1 280 336 118 8 chr4 9484294 9484413 -174804249 - L2 LINE L2 -8 3264 3133 259 253 0 25 chr4 9484654 9484733 -174803929 - L1ME LINE L1 -302 5819 5743 238 277 256 15 chr4 9484787 9484924 -174803738 - L2 LINE L2 -177 3095 2926 211 269 141 0 chr4 9485328 9485406 -174803256 - MIR SINE MIR -90 172 84 524 318 95 37 chr4 9485817 9486144 -174802518 - L2 LINE L2 -1 3312 2967 181 213 40 67 chr4 9486372 9486447 -174802215 - L2 LINE L2 -79 3234 3162 300 293 132 9 chr4 9486544 9486650 -174802012 - L2 LINE L2 -1 3271 3153 2298 111 3 0 chr4 9488069 9488366 -174800296 + AluSx SINE Alu 1 298 -14 2026 158 0 3 chr4 9488699 9489009 -174799653 + AluJb SINE Alu 1 309 -3 343 349 38 0 chr4 9489314 9489446 -174799216 - L2 LINE L2 -9 3263 3127 322 252 159 27 chr4 9490645 9490817 -174797845 - MIR3 SINE MIR -21 241 47 217 258 86 43 chr4 9491563 9491656 -174797006 - MIR SINE MIR -81 181 85 226 262 98 0 chr4 9491736 9491797 -174796865 - L2 LINE L2 -38 3275 3209 278 290 20 10 chr4 9491931 9492031 -174796631 - L2 LINE L2 -427 2887 2787 281 240 250 42 chr4 9492161 9492353 -174796309 + MIR SINE MIR 2 233 -29 533 335 62 0 chr4 9492770 9492964 -174795698 - MIR SINE MIR -30 232 27 435 236 149 43 chr4 9493420 9493581 -174795081 + MER5B DNA MER1_type 1 178 0 209 299 0 30 chr4 9494834 9494901 -174793761 + L2 LINE L2 3132 3196 -76 3563 38 11 27 chr4 9494986 9495437 -174793225 - MLT2A1 LTR ERVL 0 444 1 3564 79 24 31 chr4 9495437 9495641 -174793021 - HERVL-A1 LTR ERVL 0 5654 5450 2231 104 0 0 chr4 9495641 9495920 -174792742 + AluSx SINE Alu 1 279 -33 399 83 0 0 chr4 9495920 9495980 -174792682 + (CATA)n Simple_repeat Simple_repeat 1 60 0 3564 79 24 31 chr4 9495980 9496320 -174792342 - HERVL-A1 LTR ERVL -202 5452 5113 240 0 0 0 chr4 9496322 9496350 -174792312 - MLT2A2 LTR ERVL -422 31 4 330 347 75 17 chr4 9496468 9496762 -174791900 + L2 LINE L2 2386 2696 -618 558 179 125 9 chr4 9499429 9499541 -174789121 - FLAM_A SINE Alu -8 125 1 2279 97 30 0 chr4 9499579 9499879 -174788783 + AluSc SINE Alu 1 309 0 257 258 21 43 chr4 9499915 9500008 -174788654 - MIR3 SINE MIR -6 202 112 833 328 8 0 chr4 9500176 9500417 -174788245 - MIR SINE MIR 0 262 20 2190 131 3 6 chr4 9500451 9500765 -174787897 - AluSq SINE Alu 0 313 1 277 255 122 20 chr4 9500951 9501049 -174787613 + MIR SINE MIR 24 131 -131 1719 137 56 14 chr4 9501317 9501433 -174787229 + AluJb SINE Alu 1 111 -201 180 0 0 0 chr4 9501433 9501453 -174787209 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1719 137 56 14 chr4 9501453 9501621 -174787041 + AluJb SINE Alu 111 297 -15 2389 96 3 0 chr4 9502228 9502531 -174786131 + AluSx SINE Alu 1 304 -8 352 246 169 27 chr4 9502969 9503152 -174785510 + MIR SINE MIR 28 236 -26 2302 93 0 35 chr4 9503303 9503614 -174785048 + AluSq SINE Alu 1 300 -13 186 152 0 0 chr4 9504917 9504950 -174783712 - L2 LINE L2 -260 3053 3021 370 297 24 91 chr4 9505915 9506124 -174782538 - MIR SINE MIR -11 251 57 2250 91 7 0 chr4 9506623 9506910 -174781752 - AluSq SINE Alu -18 295 7 1282 164 9 13 chr4 9507068 9507083 -174781579 - AluJo SINE Alu -2 310 296 2473 85 0 0 chr4 9507083 9507389 -174781273 - AluSg SINE Alu -4 306 1 1282 164 9 13 chr4 9507389 9507599 -174781063 - AluJo SINE Alu -16 296 86 956 170 12 29 chr4 9507739 9507910 -174780752 - FRAM SINE Alu -9 167 1 2354 94 0 3 chr4 9508251 9508550 -174780112 - AluSq SINE Alu -15 298 1 1678 176 13 20 chr4 9508669 9508975 -174779687 - AluJb SINE Alu -6 306 3 1248 131 0 6 chr4 9508989 9509164 -174779498 - AluSg/x SINE Alu -5 307 134 2439 93 0 0 chr4 9509164 9509465 -174779197 - AluSg SINE Alu -9 301 1 1124 215 0 14 chr4 9509516 9509739 -174778923 - AluJo SINE Alu -5 307 88 320 283 88 11 chr4 9509889 9510014 -174778648 + MIR SINE MIR 51 181 -68 2137 122 0 3 chr4 9510389 9510684 -174777978 + AluSx SINE Alu 1 294 -18 1985 117 92 0 chr4 9512481 9512763 -174775899 + AluSx SINE Alu 1 308 -4 186 307 69 0 chr4 9513307 9513408 -174775254 + MER5A DNA MER1_type 37 144 -45 226 239 70 0 chr4 9513487 9513558 -174775104 + MIR SINE MIR 65 140 -122 295 321 58 15 chr4 9513638 9513775 -174774887 + MIR SINE MIR 116 258 -4 190 243 0 81 chr4 9514201 9514275 -174774387 - MIR SINE MIR -120 142 75 234 240 0 0 chr4 9514665 9514715 -174773947 - L2 LINE L2 -86 3186 3137 248 264 91 36 chr4 9514776 9514886 -174773776 + MIR SINE MIR 7 122 -140 832 188 58 34 chr4 9515080 9515288 -174773374 - MER20 DNA MER1_type 0 219 7 185 218 218 16 chr4 9515629 9515753 -174772909 - L2 LINE L2 -236 3036 2888 186 208 75 0 chr4 9515770 9515823 -174772839 + L2 LINE L2 3142 3198 -74 340 338 75 6 chr4 9515860 9516020 -174772642 + MIR SINE MIR 12 182 -80 1220 84 0 0 chr4 9516021 9516163 -174772499 + AluSq/x SINE Alu 1 142 -170 279 270 37 0 chr4 9516196 9516288 -174772374 - MIR SINE MIR -68 140 69 2265 121 0 0 chr4 9517986 9518283 -174770379 + AluSx SINE Alu 1 297 -15 2261 116 0 13 chr4 9518359 9518669 -174769993 - AluSg SINE Alu -4 306 1 223 196 20 0 chr4 9518839 9518890 -174769772 - L2 LINE L2 -1388 1926 1875 233 200 0 0 chr4 9519174 9519219 -174769443 - L2 LINE L2 -18 3254 3210 628 268 84 74 chr4 9519236 9519549 -174769113 - L2 LINE L2 0 3313 3005 2115 99 10 42 chr4 9519549 9519862 -174768800 + AluSx SINE Alu 1 303 -9 628 268 84 74 chr4 9519862 9520088 -174768574 - L2 LINE L2 -308 3005 2750 694 238 37 0 chr4 9520088 9520252 -174768410 - FAM SINE Alu -5 170 1 628 268 84 74 chr4 9520252 9520280 -174768382 - L2 LINE L2 -563 2750 2724 300 207 0 0 chr4 9520285 9520347 -174768315 - MLT1E3 LTR MaLR -5 619 565 25 0 0 0 chr4 9520381 9520406 -174768256 + AT_rich Low_complexity Low_complexity 1 25 0 265 279 0 63 chr4 9521012 9521202 -174767460 + GA-rich Low_complexity Low_complexity 3 180 0 * 335 293 11 29 chr4 9521093 9521267 -174767395 + A-rich Low_complexity Low_complexity 3 173 0 1617 195 0 10 chr4 9521301 9521593 -174767069 - AluJo SINE Alu -23 289 1 432 234 188 8 chr4 9521611 9521739 -174766923 - MLT1E1 LTR MaLR -503 151 1 1726 253 172 41 chr4 9521739 9522408 -174766254 - L2 LINE L2 -586 2728 2148 1845 110 49 0 chr4 9522408 9522671 -174765991 + AluSg SINE Alu 33 308 -2 1726 253 172 41 chr4 9522671 9522781 -174765881 - L2 LINE L2 -1166 2148 2054 1481 128 6 144 chr4 9522781 9523101 -174765561 + AluJb SINE Alu 1 276 -36 1726 253 172 41 chr4 9523101 9523253 -174765409 - L2 LINE L2 -1260 2054 1923 207 0 0 0 chr4 9523253 9523276 -174765386 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1726 253 172 41 chr4 9523276 9523467 -174765195 - L2 LINE L2 -1391 1923 1456 310 106 76 0 chr4 9523504 9523570 -174765092 + CT-rich Low_complexity Low_complexity 3 73 0 2355 108 0 0 chr4 9523634 9523929 -174764733 - AluSx SINE Alu -17 295 1 4246 165 45 12 chr4 9523961 9524787 -174763875 - L1MC1 LINE L1 0 6333 5481 794 186 3 43 chr4 9524865 9524884 -174763778 - MLT1A1 LTR MaLR 0 365 347 2367 94 3 19 chr4 9524884 9525202 -174763460 - AluSp SINE Alu 0 313 1 794 186 3 43 chr4 9525202 9525491 -174763171 - MLT1A1 LTR MaLR -18 347 1 366 262 210 15 chr4 9525513 9525784 -174762878 - L2 LINE L2 -1986 1328 1005 242 315 108 0 chr4 9527076 9527187 -174761475 + MIR3 SINE MIR 60 182 -26 215 284 196 7 chr4 9527769 9527917 -174760745 - L2 LINE L2 -228 3085 2910 849 200 51 0 chr4 9528090 9528285 -174760377 - MER3 DNA MER1_type -4 205 1 216 97 0 0 chr4 9528892 9528923 -174759739 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 2275 109 3 0 chr4 9529166 9529470 -174759192 - AluSx SINE Alu -7 305 1 339 312 0 0 chr4 9531541 9531634 -174757028 + L2 LINE L2 2967 3059 -213 2681 48 3 3 chr4 9533452 9533765 -174754897 + AluSp SINE Alu 1 313 0 646 263 23 23 chr4 9533832 9534003 -174754659 - MER5B DNA MER1_type -5 173 3 370 310 41 35 chr4 9534078 9534223 -174754439 + L2 LINE L2 3167 3312 -1 2076 120 43 10 chr4 9534307 9534606 -174754056 - AluSg SINE Alu -1 309 1 361 242 62 4 chr4 9534671 9534787 -174753875 - MIR SINE MIR -62 146 30 2257 86 3 16 chr4 9535065 9535201 -174753461 + AluSx SINE Alu 1 137 -175 2470 67 0 3 chr4 9535201 9535498 -174753164 + AluY SINE Alu 1 296 -15 2257 86 3 16 chr4 9535498 9535665 -174752997 + AluSx SINE Alu 137 300 -12 672 315 67 10 chr4 9536151 9536465 -174752197 - L1ME3A LINE L1 -76 6094 5763 1661 74 30 0 chr4 9536693 9536895 -174751767 - AluSg/x SINE Alu -14 296 89 1905 105 86 4 chr4 9536901 9537168 -174751494 + AluSg SINE Alu 1 289 -21 306 67 22 0 chr4 9537168 9537213 -174751449 + Alu SINE Alu 1 46 -256 1595 260 115 50 chr4 9537213 9537386 -174751276 - L1ME3A LINE L1 -1427 4719 4559 2313 111 0 0 chr4 9537386 9537683 -174750979 + AluSx SINE Alu 1 297 -15 1595 260 115 50 chr4 9537683 9537881 -174750781 - L1ME3A LINE L1 -1587 4559 4375 2564 85 6 0 chr4 9537881 9538244 -174750418 - L1PA8 LINE L1 0 6172 5808 1595 260 115 50 chr4 9538244 9538943 -174749719 - L1ME3A LINE L1 -1771 4375 3579 2175 111 0 13 chr4 9538997 9539316 -174749346 + AluSx SINE Alu 5 312 0 639 198 48 0 chr4 9539376 9539502 -174749160 + FLAM_A SINE Alu 1 132 -1 280 245 53 0 chr4 9539748 9539842 -174748820 - L1ME3A LINE L1 -2573 3573 3475 720 217 44 6 chr4 9540160 9540340 -174748322 - MER5A DNA MER1_type 0 189 3 214 245 31 51 chr4 9540352 9540450 -174748212 + L2 LINE L2 3169 3264 -49 1134 146 34 0 chr4 9540821 9540999 -174747663 - AluSg/x SINE Alu 0 310 127 2397 107 0 0 chr4 9540999 9541308 -174747354 - AluSg1 SINE Alu 0 309 1 2638 19 6 35 chr4 9541325 9541640 -174747022 + AluY SINE Alu 1 306 -5 202 179 0 0 chr4 9541819 9541858 -174746804 + L2 LINE L2 3218 3256 -16 2214 102 0 14 chr4 9542597 9542890 -174745772 - AluSx SINE Alu -23 289 1 247 287 77 35 chr4 9543311 9543454 -174745208 + MIR SINE MIR 80 228 -34 355 279 74 16 chr4 9543986 9544108 -174744554 - L2 LINE L2 -5 3308 3180 333 241 58 0 chr4 9544129 9544216 -174744446 + MER69 DNA AcHobo 2435 2526 0 254 225 234 0 chr4 9544322 9544433 -174744229 - Charlie8 DNA MER1_type -2245 172 36 1468 159 40 0 chr4 9545656 9545883 -174742779 + AluJb SINE Alu 42 277 -35 206 0 69 0 chr4 9545890 9545919 -174742743 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 264 59 0 0 chr4 9546355 9546389 -174742273 + (CA)n Simple_repeat Simple_repeat 1 34 0 1750 166 6 32 chr4 9546406 9546720 -174741942 - AluJo SINE Alu -6 306 1 2662 20 0 7 chr4 9546875 9547170 -174741492 - AluYa5 SINE Alu -18 293 1 1921 158 0 32 chr4 9548067 9548377 -174740285 - AluJb SINE Alu -12 300 1 2166 97 7 7 chr4 9551791 9552081 -174736581 - AluSx SINE Alu -22 290 1 539 93 0 0 chr4 9552597 9552672 -174735990 - AluJ/FRAM SINE Alu -8 304 230 1068 259 15 23 chr4 9552802 9553145 -174735517 - L1MC4 LINE L1 -2 8040 7701 1192 112 0 12 chr4 9553146 9553307 -174735355 - AluSg/x SINE Alu -17 295 137 767 218 34 10 chr4 9553308 9553514 -174735148 - L1MC4 LINE L1 -414 7628 7418 1040 219 138 12 chr4 9553551 9553797 -174734865 - AluJo SINE Alu -30 282 6 1582 214 163 12 chr4 9553800 9554286 -174734376 - L1MC4 LINE L1 -654 7388 6830 366 303 68 25 chr4 9554555 9554717 -174733945 - MIR SINE MIR -74 188 20 2518 82 0 0 chr4 9554789 9555094 -174733568 - AluY SINE Alu -6 305 1 636 287 27 27 chr4 9556354 9556577 -174732085 - MIR SINE MIR -12 250 28 2484 80 0 0 chr4 9557391 9557690 -174730972 - AluY SINE Alu -12 299 1 935 261 30 4 chr4 9558194 9558428 -174730234 + MIR SINE MIR 2 241 -21 247 290 167 14 chr4 9559101 9559239 -174729423 + MIR SINE MIR 9 167 -95 809 250 11 0 chr4 9559627 9559811 -174728851 + MER5A DNA MER1_type 1 186 -3 382 200 265 6 chr4 9560354 9560524 -174728138 + L2 LINE L2 1915 2128 -1186 1363 59 53 0 chr4 9560561 9560748 -174727914 - MER107 DNA MER1_type 0 197 1 315 401 16 29 chr4 9561452 9561694 -174726968 + L1MDa LINE L1 21 259 -6281 2302 116 0 0 chr4 9561798 9562100 -174726562 - AluSx SINE Alu -1 311 10 975 227 74 83 chr4 9562582 9562858 -174725804 + L1MDa LINE L1 913 1190 -5351 2221 117 0 7 chr4 9562858 9563199 -174725463 - AluSx SINE Alu 0 312 1 2074 129 3 7 chr4 9563201 9563496 -174725166 - AluJb SINE Alu -18 294 1 975 227 74 83 chr4 9563496 9563794 -174724868 + L1MDa LINE L1 1191 1440 -5101 628 263 0 11 chr4 9563797 9563972 -174724690 + AluSq SINE Alu 2 174 -139 356 322 66 62 chr4 9564010 9564278 -174724384 - L1M4 LINE L1 -2745 3401 3130 189 0 0 0 chr4 9564278 9564299 -174724363 + (C)n Simple_repeat Simple_repeat 1 21 0 356 322 66 62 chr4 9564299 9564350 -174724312 - L1M4 LINE L1 -3016 3130 3081 253 236 97 0 chr4 9565561 9565633 -174723029 + L2 LINE L2 3234 3312 -1 195 220 0 0 chr4 9567718 9567768 -174720894 + (CGTG)n Simple_repeat Simple_repeat 2 51 0 6965 131 38 26 chr4 9569197 9570230 -174718432 - HSMAR2 DNA Mariner -1 1301 250 2354 100 0 10 chr4 9570230 9570531 -174718131 + AluSc SINE Alu 1 298 -11 6965 131 38 26 chr4 9570531 9570740 -174717922 - HSMAR2 DNA Mariner -1052 250 45 1460 172 75 4 chr4 9570742 9571010 -174717652 - AluJo SINE Alu -24 288 2 362 199 202 17 chr4 9571073 9571208 -174717454 - AluSq SINE Alu -48 255 107 560 240 157 23 chr4 9571592 9571809 -174716853 - MIR SINE MIR 0 262 17 2288 87 7 3 chr4 9571859 9572148 -174716514 + AluSx SINE Alu 3 292 -20 342 282 40 16 chr4 9572197 9572321 -174716341 + MIR SINE MIR 80 206 -56 2531 140 56 22 chr4 9572329 9572643 -174716019 - MER4C LTR ERV1 0 465 130 1590 138 109 4 chr4 9572643 9572918 -174715744 - AluJb SINE Alu -8 304 1 2531 140 56 22 chr4 9572918 9573053 -174715609 - MER4C LTR ERV1 -335 130 1 2272 93 100 28 chr4 9575408 9575807 -174712855 + MSTA LTR MaLR 1 428 0 2025 153 59 50 chr4 9576115 9576307 -174712355 - MSTA LTR MaLR 0 428 239 2406 96 0 0 chr4 9576307 9576599 -174712063 - AluSp SINE Alu -21 292 1 2025 153 59 50 chr4 9576599 9576830 -174711832 - MSTA LTR MaLR -189 239 1 206 333 15 0 chr4 9576989 9577055 -174711607 - L2 LINE L2 -5 3308 3242 278 240 91 50 chr4 9577700 9577821 -174710841 + MIR SINE MIR 20 145 -117 1929 138 7 10 chr4 9578177 9578473 -174710189 + AluJb SINE Alu 14 308 -4 368 265 99 88 chr4 9578989 9579272 -174709390 + L1MC5 LINE L1 7639 7924 -37 1487 138 104 4 chr4 9579299 9579539 -174709123 + AluJo SINE Alu 37 300 -12 2048 132 26 3 chr4 9580236 9580540 -174708122 + AluSx SINE Alu 1 311 -1 2345 103 0 6 chr4 9580556 9580867 -174707795 + AluSx SINE Alu 1 309 -3 278 238 188 0 chr4 9581128 9581229 -174707433 + MIR SINE MIR 34 153 -55 212 281 22 45 chr4 9581329 9581359 -174707303 - MIR SINE MIR -70 192 163 1979 147 0 26 chr4 9581359 9581671 -174706991 - AluJo SINE Alu -8 304 1 212 281 22 45 chr4 9581671 9581729 -174706933 - MIR SINE MIR -99 163 106 244 281 34 22 chr4 9581787 9581876 -174706786 + L1ME4a LINE L1 5963 6052 -69 1178 150 0 11 chr4 9581889 9582076 -174706586 - AluSg/x SINE Alu -6 304 120 1686 173 8 4 chr4 9582123 9582389 -174706273 + AluJb SINE Alu 1 267 -45 2389 79 3 10 chr4 9584985 9585290 -174703372 + AluSp SINE Alu 1 303 -10 200 323 0 0 chr4 9585484 9585546 -174703116 + MIR SINE MIR 82 143 -119 337 264 33 137 chr4 9585669 9585724 -174702938 - L1ME4a LINE L1 -14 6107 6048 1719 149 39 62 chr4 9585724 9585875 -174702787 + AluJb SINE Alu 1 143 -169 2044 116 42 3 chr4 9585875 9586160 -174702502 + AluSx SINE Alu 1 296 -16 1719 149 39 62 chr4 9586160 9586317 -174702345 + AluJb SINE Alu 143 302 -10 337 264 33 137 chr4 9586317 9586443 -174702219 - L1ME4a LINE L1 -73 6048 5945 211 224 0 35 chr4 9586493 9586551 -174702111 + MIR SINE MIR 106 161 -101 1961 157 3 0 chr4 9586551 9586851 -174701811 + AluJo SINE Alu 1 301 -11 2357 79 3 25 chr4 9586992 9587307 -174701355 - AluY SINE Alu -3 308 1 280 216 72 36 chr4 9588588 9588699 -174699963 + MIR3 SINE MIR 87 201 -7 2108 138 0 3 chr4 9588761 9589072 -174699590 - AluJb SINE Alu -2 310 1 242 337 47 0 chr4 9590764 9590850 -174697812 - L2 LINE L2 -40 3232 3143 192 294 88 0 chr4 9590913 9591015 -174697647 + MIR SINE MIR 33 143 -65 444 268 150 0 chr4 9591084 9591237 -174697425 - MER5B DNA MER1_type 0 178 3 405 215 0 13 chr4 9594967 9595046 -174693616 - FLAM SINE Alu -7 126 49 23 0 0 0 chr4 9595390 9595413 -174693249 + AT_rich Low_complexity Low_complexity 1 23 0 283 233 55 0 chr4 9596267 9596340 -174692322 - MER46A DNA MER2_type -1 235 159 309 257 14 0 chr4 9596340 9596414 -174692248 - Tigger3(Golem) DNA MER2_type 0 3037 2963 366 303 68 25 chr4 9596677 9596839 -174691823 + MIR SINE MIR 20 188 -74 1508 218 166 12 chr4 9597108 9597590 -174691072 + L1MC4 LINE L1 6830 7385 -657 2532 70 0 0 chr4 9597595 9597896 -174690766 + AluY SINE Alu 6 306 -5 222 149 43 0 chr4 9598210 9598257 -174690405 + MIR SINE MIR 105 153 -55 626 276 22 0 chr4 9598409 9598590 -174690072 - AluSp SINE Alu -118 195 11 667 285 45 58 chr4 9598600 9598912 -174689750 + L2 LINE L2 3006 3313 0 234 200 0 0 chr4 9598929 9598974 -174689688 + L2 LINE L2 3210 3254 -18 1440 120 0 0 chr4 9599483 9599683 -174688979 + AluSg SINE Alu 1 200 -110 535 138 0 12 chr4 9600388 9600468 -174688194 - AluJ/FLAM SINE Alu -232 80 2 730 178 0 0 chr4 9600469 9600604 -174688058 - MER4C LTR ERV1 -330 135 1 207 196 0 69 chr4 9601702 9601804 -174686858 + (CACAC)n Simple_repeat Simple_repeat 1 95 0 * 494 189 19 36 chr4 9601744 9602138 -174686524 + (CA)n Simple_repeat Simple_repeat 1 387 0 266 190 16 38 chr4 9602230 9602414 -174686248 + (CA)n Simple_repeat Simple_repeat 1 180 0 2098 123 0 0 chr4 9602644 9602945 -174685717 - AluSg SINE Alu -9 301 1 1975 161 0 0 chr4 9602951 9603261 -174685401 - AluJb SINE Alu -2 310 1 180 356 8 51 chr4 9603557 9603675 -174684987 - MIR SINE MIR -42 220 108 1946 113 3 53 chr4 9606802 9607121 -174681541 - AluSq SINE Alu -10 303 1 2092 125 0 0 chr4 9607124 9607421 -174681241 - AluSx SINE Alu -15 297 1 1012 150 0 0 chr4 9607751 9607911 -174680751 + AluSg/x SINE Alu 144 303 -6 2378 69 3 0 chr4 9608037 9608341 -174680321 + AluY SINE Alu 1 305 -6 2640 85 16 6 chr4 9608361 9608727 -174679935 + THE1C LTR MaLR 1 370 -5 1608 208 6 12 chr4 9608844 9609181 -174679481 - MLT1A1 LTR MaLR 0 365 31 2211 94 0 7 chr4 9609559 9609857 -174678805 - AluSq SINE Alu -17 296 1 1949 133 26 0 chr4 9609873 9610175 -174678487 - AluSx SINE Alu -2 310 1 1373 145 103 4 chr4 9610870 9611112 -174677550 - AluJo SINE Alu -10 302 37 399 265 99 88 chr4 9611139 9611422 -174677240 - L1MC5 LINE L1 -37 7924 7639 1814 142 7 10 chr4 9611938 9612234 -174676428 - AluJb SINE Alu -4 308 14 297 240 91 50 chr4 9612590 9612711 -174675951 - MIR SINE MIR -117 145 20 2227 156 59 45 chr4 9613581 9613812 -174674850 + MSTA LTR MaLR 1 242 -186 2268 99 0 0 chr4 9613812 9614106 -174674556 + AluSp SINE Alu 1 294 -19 2227 156 59 45 chr4 9614106 9614296 -174674366 + MSTA LTR MaLR 242 428 0 2461 93 101 25 chr4 9614604 9615002 -174673660 - MSTA LTR MaLR 0 428 1 338 273 36 43 chr4 9616886 9617025 -174671637 + MIR3 SINE MIR 9 146 -62 431 308 33 54 chr4 9617134 9617374 -174671288 + L1M4b LINE L1 11 245 -6614 316 333 130 10 chr4 9617643 9617835 -174670827 + L1M4b LINE L1 1029 1243 -5612 336 284 0 53 chr4 9617835 9617930 -174670732 + L1MC4 LINE L1 6614 6703 -1339 325 230 81 0 chr4 9617917 9617991 -174670671 + L1M4b LINE L1 2523 2602 -4355 * 25 31 0 0 chr4 9618610 9618642 -174670020 + AT_rich Low_complexity Low_complexity 1 32 0 543 267 82 19 chr4 9618795 9619001 -174669661 - MER20 DNA MER1_type 0 219 1 2475 39 0 20 chr4 9619390 9619695 -174668967 - AluY SINE Alu -12 299 1 360 333 49 27 chr4 9619762 9619987 -174668675 + MIR SINE MIR 31 260 -2 542 286 38 72 chr4 9622210 9622472 -174666190 + MER112 DNA MER1_type 2 254 -2 366 322 6 76 chr4 9622570 9622665 -174665997 - MIR3 SINE MIR -50 158 132 2092 124 3 0 chr4 9622665 9622971 -174665691 + AluSx SINE Alu 1 307 -5 366 322 6 76 chr4 9622971 9623077 -174665585 - MIR3 SINE MIR -76 132 20 2281 82 3 0 chr4 9624663 9624967 -174663695 - AluY SINE Alu -6 305 1 227 228 101 13 chr4 9625655 9625734 -174662928 - MIR SINE MIR -60 148 63 307 290 32 11 chr4 9626834 9626927 -174661735 + MIR SINE MIR 51 145 -63 597 213 107 6 chr4 9629932 9630101 -174658561 + MER5A DNA MER1_type 1 186 -3 24 32 0 0 chr4 9630165 9630196 -174658466 + AT_rich Low_complexity Low_complexity 1 31 0 2340 70 0 0 chr4 9630579 9630864 -174657798 + AluSc SINE Alu 3 287 -22 2143 109 0 13 chr4 9631189 9631501 -174657161 - AluSq SINE Alu -5 308 1 227 228 101 13 chr4 9632188 9632267 -174656395 - MIR SINE MIR -60 148 63 307 290 32 11 chr4 9633367 9633460 -174655202 + MIR SINE MIR 51 145 -63 358 206 75 9 chr4 9635386 9635493 -174653169 + L1MD1 LINE L1 4784 4897 -1249 1377 253 39 120 chr4 9635495 9635809 -174652853 + L1MD1 LINE L1 5254 5592 -650 1873 170 3 3 chr4 9635809 9636120 -174652542 + AluSx SINE Alu 1 311 -1 1377 253 39 120 chr4 9636120 9636168 -174652494 + L1MD1 LINE L1 5592 5642 -600 1853 155 0 3 chr4 9636168 9636465 -174652197 - AluJb SINE Alu -6 306 11 1377 253 39 120 chr4 9636465 9636918 -174651744 + L1MD1 LINE L1 5642 6004 -238 * 1928 237 58 8 chr4 9636544 9637063 -174651599 + L1MB8 LINE L1 5625 6169 -9 2609 42 0 0 chr4 9637066 9637375 -174651287 - AluY SINE Alu -2 309 1 247 306 24 0 chr4 9637422 9637507 -174651155 - L2 LINE L2 -1 3312 3226 310 321 30 48 chr4 9637584 9637752 -174650910 - MIR SINE MIR -91 171 7 1273 213 84 3 chr4 9638018 9638314 -174650348 + MLT1C LTR MaLR 140 459 -8 2087 92 0 7 chr4 9638736 9639055 -174649607 + AluSx SINE Alu 1 317 0 1506 213 33 0 chr4 9639061 9639361 -174649301 + AluJb SINE Alu 3 312 0 361 267 199 6 chr4 9639450 9639611 -174649051 + MER117 DNA MER1_type 3 194 -3 1665 191 10 93 chr4 9640444 9640852 -174647810 + MLT1A2 LTR MaLR 1 374 0 2386 57 0 13 chr4 9640958 9641257 -174647405 - AluY SINE Alu -16 295 1 378 283 20 108 chr4 9641421 9641672 -174646990 + L2 LINE L2 2953 3181 -91 404 298 67 8 chr4 9642065 9642209 -174646453 - MIR SINE MIR -56 152 20 180 322 34 0 chr4 9643135 9643194 -174645468 - L2 LINE L2 -5 3267 3207 494 289 72 4 chr4 9643249 9643484 -174645178 - LTR33 LTR ERVL -36 485 235 679 246 7 0 chr4 9643494 9643636 -174645026 + MLT1C LTR MaLR 321 463 -4 2117 185 45 9 chr4 9644254 9644698 -174643964 - MLT1C LTR MaLR -7 460 1 259 229 212 33 chr4 9645885 9646000 -174642662 - MIR SINE MIR -45 163 32 1102 162 33 50 chr4 9646221 9646462 -174642200 - L1MA6 LINE L1 -2 6298 6062 330 130 4 2 chr4 9646462 9646711 -174641951 + AluJo SINE Alu 1 302 0 406 194 153 0 chr4 9646714 9646812 -174641850 - L1MA6 LINE L1 -225 6075 5963 223 62 0 0 chr4 9646823 9646855 -174641807 + (TTTTG)n Simple_repeat Simple_repeat 2 165 0 2105 96 7 0 chr4 9646855 9647135 -174641527 - AluSg SINE Alu -1 313 1 1889 158 5 25 chr4 9647139 9647507 -174641155 - L1 LINE L1 -871 5275 4915 1812 152 0 26 chr4 9648310 9648613 -174640049 + AluSx SINE Alu 1 295 -17 1467 208 31 0 chr4 9648618 9648935 -174639727 + MLT1C LTR MaLR 1 327 -140 * 1557 236 43 10 chr4 9648921 9649319 -174639343 + MER67A LTR ERV1 5 415 -128 698 110 176 73 chr4 9649322 9649458 -174639204 + AluJo SINE Alu 2 151 -161 544 103 0 0 chr4 9649481 9649559 -174639103 - AluJb SINE Alu -81 231 154 244 365 48 0 chr4 9649937 9650041 -174638621 + L2 LINE L2 3180 3288 -25 258 106 0 0 chr4 9650050 9650097 -174638565 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 427 176 0 0 chr4 9651002 9651076 -174637586 - MIR SINE MIR -110 152 79 251 175 140 0 chr4 9651500 9651557 -174637105 + MIR SINE MIR 81 145 -117 458 145 0 0 chr4 9651617 9651686 -174636976 - THE1C LTR MaLR 0 375 307 1916 148 0 13 chr4 9651686 9651996 -174636666 - AluSx SINE Alu -1 311 6 244 260 0 0 chr4 9652100 9652150 -174636512 + (TGG)n Simple_repeat Simple_repeat 2 51 0 197 342 0 0 chr4 9654256 9654332 -174634330 + L2 LINE L2 3197 3272 0 261 119 0 0 chr4 9654332 9654374 -174634288 + (TGAG)n Simple_repeat Simple_repeat 2 43 0 242 267 91 53 chr4 9655626 9655813 -174632849 + L2 LINE L2 3031 3224 -89 2183 229 53 58 chr4 9655916 9656553 -174632109 + L1ME1 LINE L1 5491 6126 -40 2268 95 0 3 chr4 9656553 9656858 -174631804 + AluSq SINE Alu 1 304 -9 2183 229 53 58 chr4 9656858 9656894 -174631768 + L1ME1 LINE L1 6126 6161 -5 240 86 0 0 chr4 9659198 9659233 -174629429 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 621 292 35 42 chr4 9659260 9659520 -174629142 + Charlie8 DNA MER1_type 1 258 -2159 260 146 0 139 chr4 9659688 9659839 -174628823 + (CCCCAG)n Simple_repeat Simple_repeat 3 132 0 203 262 16 16 chr4 9661269 9661330 -174627332 + MIR SINE MIR 81 141 -67 254 224 17 0 chr4 9661434 9661492 -174627170 + L2 LINE L2 2997 3055 -217 186 43 0 0 chr4 9661670 9661693 -174626969 + (TTCA)n Simple_repeat Simple_repeat 2 24 0 239 268 67 41 chr4 9662309 9662489 -174626173 + MIR SINE MIR 7 150 -58 305 269 54 0 chr4 9662904 9662997 -174625665 + MIR SINE MIR 104 201 -61 6889 58 29 2 chr4 9663047 9664072 -174624590 + L1PA7 LINE L1 5106 6153 -1 671 273 109 16 chr4 9664082 9664459 -174624203 - LTR33 LTR ERVL -65 456 45 297 295 11 11 chr4 9664545 9664640 -174624022 - MIR3 SINE MIR -49 159 65 198 0 0 0 chr4 9665003 9665025 -174623637 + (TTCA)n Simple_repeat Simple_repeat 3 24 0 211 254 0 17 chr4 9665100 9665159 -174623503 - MIR SINE MIR -56 152 95 184 327 84 0 chr4 9665427 9665534 -174623128 - MIR SINE MIR -145 117 2 418 234 21 0 chr4 9666244 9666338 -174622324 + MIR SINE MIR 2 97 -165 205 308 33 11 chr4 9668597 9668688 -174619974 + L2 LINE L2 2886 2978 -335 221 300 44 22 chr4 9668820 9668910 -174619752 + L2 LINE L2 3177 3268 -45 628 233 7 0 chr4 9668910 9669060 -174619602 - L1 LINE L1 -1764 4382 4232 * 2358 145 0 3 chr4 9669059 9669439 -174619223 + L1PB3 LINE L1 5734 6112 -42 198 103 0 0 chr4 9669585 9669614 -174619048 + (CACCAT)n Simple_repeat Simple_repeat 4 32 0 655 116 0 101 chr4 9669625 9669824 -174618838 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 655 116 0 101 chr4 9669838 9670037 -174618625 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 340 97 32 0 chr4 9670049 9670111 -174618551 + (CACCAT)n Simple_repeat Simple_repeat 5 68 0 688 176 23 6 chr4 9670122 9670298 -174618364 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 208 107 0 0 chr4 9670298 9670326 -174618336 + (CAT)n Simple_repeat Simple_repeat 1 28 0 318 317 137 22 chr4 9670835 9671018 -174617644 - MIR SINE MIR -6 256 53 608 310 70 0 chr4 9671062 9671275 -174617387 + MIR SINE MIR 35 262 0 220 98 0 59 chr4 9672365 9672416 -174616246 + (TTCC)n Simple_repeat Simple_repeat 4 51 0 249 318 163 20 chr4 9672651 9673050 -174615612 + L2 LINE L2 2817 3272 0 599 365 73 0 chr4 9673110 9673466 -174615196 + L3 LINE CR1 767 1148 -429 581 324 14 19 chr4 9673479 9673692 -174614970 + MIR SINE MIR 8 219 -43 1522 141 94 7 chr4 9674907 9675184 -174613478 + THE1B LTR MaLR 1 301 -63 930 207 45 21 chr4 9675969 9676211 -174612451 - ORSL DNA AcHobo -20 255 8 235 364 79 0 chr4 9677334 9677474 -174611188 + MIR SINE MIR 87 237 -25 563 250 6 0 chr4 9679196 9679870 -174608792 + (CA)n Simple_repeat Simple_repeat 1 678 0 557 232 6 0 chr4 9679887 9680055 -174608607 + (CA)n Simple_repeat Simple_repeat 2 170 0 629 232 0 6 chr4 9680071 9680395 -174608267 + (CA)n Simple_repeat Simple_repeat 1 321 0 228 262 0 0 chr4 9680918 9680979 -174607683 - L1MB3 LINE L1 -1 6182 6122 235 294 73 0 chr4 9681817 9681926 -174606736 - L2 LINE L2 0 3272 3156 198 195 0 0 chr4 9683342 9683383 -174605279 - MIR SINE MIR -113 149 109 261 326 47 0 chr4 9683987 9684073 -174604589 + MIR3 SINE MIR 97 186 -22 574 250 8 15 chr4 9684254 9684386 -174604276 - MER45A DNA AcHobo -2 176 46 2169 95 3 3 chr4 9686193 9686487 -174602175 - AluSq SINE Alu -19 294 1 244 211 18 0 chr4 9687306 9687363 -174601299 - L2 LINE L2 -211 3061 3004 1168 220 90 52 chr4 9688198 9688530 -174600132 + MLT1C LTR MaLR 2 360 -107 2218 102 0 0 chr4 9688530 9688825 -174599837 - AluSc SINE Alu -14 295 1 1168 220 90 52 chr4 9688825 9688938 -174599724 + MLT1C LTR MaLR 360 467 0 345 348 0 0 chr4 9689056 9689145 -174599517 - L1MC4 LINE L1 -1340 6702 6614 * 372 280 38 0 chr4 9689065 9689181 -174599481 + L1MC4 LINE L1 1996 6983 -1339 2115 96 4 0 chr4 9689194 9689475 -174599187 - AluSx SINE Alu -30 282 1 21 0 0 0 chr4 9689477 9689498 -174599164 + AT_rich Low_complexity Low_complexity 1 21 0 8968 248 58 23 chr4 9689503 9690658 -174598004 + L1MD1 LINE L1 1217 2330 -4627 2219 117 3 0 chr4 9690658 9690965 -174597697 + AluSx SINE Alu 1 308 -4 8968 248 58 23 chr4 9690965 9693496 -174595166 + L1MD1 LINE L1 2330 5145 -1812 2505 64 0 3 chr4 9693496 9693808 -174594854 + AluY SINE Alu 1 311 0 8968 248 58 23 chr4 9693808 9694393 -174594269 + L1MD1 LINE L1 5145 5708 -1249 1407 252 39 120 chr4 9694395 9694709 -174593953 + L1MD1 LINE L1 6065 6403 -650 1907 164 3 3 chr4 9694709 9695019 -174593643 + AluSx SINE Alu 1 310 -2 1407 252 39 120 chr4 9695019 9695067 -174593595 + L1MD1 LINE L1 6403 6453 -600 1853 155 0 3 chr4 9695067 9695364 -174593298 - AluJb SINE Alu -6 306 11 1407 252 39 120 chr4 9695364 9695817 -174592845 + L1MD1 LINE L1 6453 6815 -238 * 2048 246 32 4 chr4 9695443 9695981 -174592681 + L1MB8 LINE L1 6436 6990 -5 2660 35 0 0 chr4 9695991 9696302 -174592360 - AluY SINE Alu 0 311 1 263 315 22 0 chr4 9696349 9696441 -174592221 - L2 LINE L2 -1 3312 3219 352 333 24 42 chr4 9696511 9696679 -174591983 - MIR SINE MIR -91 171 7 1167 213 84 3 chr4 9696945 9697241 -174591421 + MLT1C LTR MaLR 140 459 -8 2111 92 0 7 chr4 9697663 9697982 -174590680 + AluSx SINE Alu 1 317 0 1559 213 33 0 chr4 9697988 9698288 -174590374 + AluJb SINE Alu 3 312 0 311 253 208 7 chr4 9698377 9698531 -174590131 + MER117 DNA MER1_type 3 187 -10 1693 189 10 93 chr4 9699371 9699779 -174588883 + MLT1A2 LTR MaLR 1 374 0 2392 60 0 13 chr4 9699885 9700184 -174588478 - AluY SINE Alu -16 295 1 391 287 20 108 chr4 9700348 9700599 -174588063 + L2 LINE L2 2953 3181 -91 441 323 72 7 chr4 9700913 9701136 -174587526 - MIR SINE MIR 0 262 20 193 410 119 11 chr4 9701351 9701612 -174587050 - L2 LINE L2 -345 2969 2681 191 322 34 0 chr4 9702062 9702121 -174586541 - L2 LINE L2 -5 3267 3207 426 289 72 4 chr4 9702176 9702411 -174586251 - LTR33 LTR ERVL -36 485 235 634 250 7 0 chr4 9702421 9702565 -174586097 + MLT1C LTR MaLR 321 465 -2 1977 182 45 9 chr4 9703181 9703625 -174585037 - MLT1C LTR MaLR -7 460 1 230 224 22 62 chr4 9704317 9704496 -174584166 + (CACCT)n Simple_repeat Simple_repeat 5 176 0 207 221 11 79 chr4 9704534 9704724 -174583938 + (CACCT)n Simple_repeat Simple_repeat 4 180 0 246 290 183 30 chr4 9704769 9704900 -174583762 - MIR SINE MIR -80 182 32 1106 162 33 50 chr4 9705121 9705362 -174583300 - L1MA6 LINE L1 -2 6298 6062 331 122 4 2 chr4 9705362 9705611 -174583051 + AluJo SINE Alu 1 302 0 373 194 153 0 chr4 9705614 9705712 -174582950 - L1MA6 LINE L1 -225 6075 5963 2108 104 7 0 chr4 9705731 9706035 -174582627 - AluSg SINE Alu 0 306 1 1752 163 5 25 chr4 9706039 9706407 -174582255 - L1MA6 LINE L1 -871 5275 4915 1852 152 0 26 chr4 9707210 9707513 -174581149 + AluSx SINE Alu 1 295 -17 1365 208 31 0 chr4 9707518 9707835 -174580827 + MLT1C LTR MaLR 1 327 -140 * 1453 231 43 10 chr4 9707821 9708219 -174580443 + MER67A LTR ERV1 5 415 -128 716 109 175 73 chr4 9708221 9708358 -174580304 + AluJo SINE Alu 1 151 -161 552 103 0 0 chr4 9708381 9708459 -174580203 - AluJb SINE Alu -81 231 154 292 266 73 139 chr4 9708508 9708948 -174579714 + L2 LINE L2 2844 3254 -18 282 29 0 0 chr4 9708950 9708985 -174579677 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 364 355 49 16 chr4 9709432 9709615 -174579047 - L1ME4a LINE L1 -8 6113 5925 1550 154 50 50 chr4 9709769 9710067 -174578595 + AluJo SINE Alu 1 298 -14 228 344 135 23 chr4 9710166 9710381 -174578281 - L2 LINE L2 0 3313 3075 231 250 14 14 chr4 9710793 9710865 -174577797 + LTR16C LTR ERVL 418 489 -2 298 289 12 0 chr4 9710902 9710985 -174577677 - L2 LINE L2 -276 3037 2954 757 245 0 16 chr4 9710985 9711177 -174577485 - MLT1A1 LTR MaLR 0 365 177 1489 133 3 98 chr4 9711178 9711563 -174577099 - MER4A LTR ERV1 0 664 257 375 165 94 0 chr4 9711563 9711648 -174577014 - MER4A LTR ERV1 -571 93 1 * 737 239 5 11 chr4 9711648 9711828 -174576834 - MLT1A1 LTR MaLR -186 179 1 1418 242 35 113 chr4 9711829 9712407 -174576255 - L2 LINE L2 -359 2955 2423 1668 261 60 12 chr4 9712614 9713096 -174575566 - MLT1D LTR MaLR 0 505 1 432 339 63 27 chr4 9713567 9713788 -174574874 - MIR SINE MIR -6 256 28 718 196 35 30 chr4 9714054 9714253 -174574409 + MLT2D LTR ERVL 208 407 -7 362 270 40 24 chr4 9714255 9714381 -174574281 + L1MC4 LINE L1 7785 7912 -130 189 213 0 0 chr4 9714381 9714428 -174574234 + (TG)n Simple_repeat Simple_repeat 2 48 0 312 296 92 35 chr4 9714450 9714592 -174574070 + L1MC4 LINE L1 6595 6744 -1298 303 248 38 29 chr4 9716183 9716288 -174572374 + L1ME3A LINE L1 5664 5769 -401 469 246 12 76 chr4 9716295 9716466 -174572196 + L1ME3A LINE L1 6006 6165 -5 929 160 7 7 chr4 9716513 9716663 -174571999 + FRAM SINE Alu 2 151 -15 339 403 31 13 chr4 9716960 9717278 -174571384 + L1MC/D LINE L1 5449 5772 -2036 2392 66 0 3 chr4 9717333 9717635 -174571027 + AluY SINE Alu 1 301 -10 798 96 52 0 chr4 9718669 9718784 -174569878 - L1PA11 LINE L1 0 6174 6054 505 264 109 10 chr4 9718832 9719033 -174569629 + MLT1C LTR MaLR 240 460 -7 830 160 20 85 chr4 9720355 9720440 -174568222 - MLT1B LTR MaLR -203 187 98 2231 123 0 0 chr4 9720440 9720750 -174567912 - AluSx SINE Alu -2 310 1 830 160 20 85 chr4 9720750 9720864 -174567798 - MLT1B LTR MaLR -292 98 1 760 321 4 20 chr4 9721562 9721814 -174566848 + MIR SINE MIR 15 262 0 1958 184 34 50 chr4 9722989 9723407 -174565255 - MLT2D LTR ERVL 0 414 4 475 253 266 0 chr4 9723814 9723972 -174564690 - MIR SINE MIR -25 237 38 499 146 115 0 chr4 9724140 9724236 -174564426 + MER53 DNA DNA 1 107 -82 208 254 111 0 chr4 9724584 9724647 -174564015 + MIR SINE MIR 113 182 -80 591 258 82 6 chr4 9725079 9725238 -174563424 + MIR SINE MIR 44 214 -48 556 317 138 43 chr4 9725368 9725649 -174563013 - L1ME4a LINE L1 -109 6012 5673 2469 52 0 13 chr4 9725649 9725955 -174562707 - AluY SINE Alu -9 302 1 556 317 138 43 chr4 9725955 9726074 -174562588 - L1ME4a LINE L1 -448 5673 5567 23 68 0 0 chr4 9726291 9726335 -174562327 + AT_rich Low_complexity Low_complexity 1 44 0 397 314 84 30 chr4 9726763 9726861 -174561801 + L1M4 LINE L1 2924 3015 -3131 2165 103 3 3 chr4 9726861 9727163 -174561499 - AluSc SINE Alu -7 302 1 397 314 84 30 chr4 9727163 9727623 -174561039 + L1M4 LINE L1 3015 3516 -2630 1846 147 39 23 chr4 9727623 9727758 -174560904 + AluSx SINE Alu 1 132 -180 207 0 0 0 chr4 9727758 9727781 -174560881 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1846 147 39 23 chr4 9727781 9727952 -174560710 + AluSx SINE Alu 132 312 0 611 217 22 0 chr4 9727989 9728127 -174560535 - L1ME1 LINE L1 -1 6165 6025 637 241 11 43 chr4 9729199 9729386 -174559276 + MIR SINE MIR 31 211 -51 297 311 85 28 chr4 9729523 9729700 -174558962 + MIR SINE MIR 13 199 -63 330 237 21 54 chr4 9730463 9730556 -174558106 - L2 LINE L2 -27 3245 3156 558 217 45 18 chr4 9731430 9731575 -174557087 - MIR SINE MIR -54 154 33 182 290 16 32 chr4 9731557 9731619 -174557043 - L2 LINE L2 -536 2778 2718 * 222 142 62 7 chr4 9732790 9732854 -174555808 + MIR SINE MIR 108 146 -62 345 263 72 105 chr4 9732894 9733022 -174555640 - L2 LINE L2 -7 3306 3186 877 207 18 62 chr4 9733022 9733249 -174555413 + MER20 DNA MER1_type 1 217 -2 345 263 72 105 chr4 9733249 9733329 -174555333 - L2 LINE L2 -127 3186 3105 316 308 100 15 chr4 9733619 9733749 -174554913 - MIR SINE MIR -70 192 52 371 235 76 34 chr4 9734411 9734530 -174554132 - MIR SINE MIR -99 163 40 182 234 0 21 chr4 9735713 9735760 -174552902 + MIR SINE MIR 37 82 -126 269 306 119 38 chr4 9736692 9736852 -174551810 - L2 LINE L2 -177 3095 2923 1673 170 4 0 chr4 9736992 9737263 -174551399 + AluSq SINE Alu 24 295 -18 252 161 69 11 chr4 9737714 9737801 -174550861 + (CA)n Simple_repeat Simple_repeat 2 93 0 314 107 101 0 chr4 9737814 9737973 -174550689 + (CA)n Simple_repeat Simple_repeat 1 175 0 334 144 67 16 chr4 9738019 9738527 -174550135 + (CA)n Simple_repeat Simple_repeat 1 533 0 282 147 54 92 chr4 9738529 9738713 -174549949 + (CACTA)n Simple_repeat Simple_repeat 3 179 0 * 521 130 65 16 chr4 9738645 9739073 -174549589 + (CA)n Simple_repeat Simple_repeat 1 449 0 220 318 56 19 chr4 9740167 9740274 -174548388 - L2 LINE L2 -2 3270 3160 186 229 0 71 chr4 9740352 9740422 -174548240 + L2 LINE L2 3248 3312 -1 784 118 49 118 chr4 9740593 9740796 -174547866 + MER53 DNA DNA 1 189 0 245 29 29 0 chr4 9741126 9741160 -174547502 + (CA)n Simple_repeat Simple_repeat 2 36 0 339 333 10 0 chr4 9741161 9741263 -174547399 + L2 LINE L2 3165 3267 -5 341 341 24 2 chr4 9742821 9742959 -174545703 + MIR SINE MIR 11 143 -65 196 402 45 0 chr4 9743025 9743137 -174545525 + L2 LINE L2 3181 3297 -16 424 220 10 0 chr4 9743142 9743242 -174545420 + L1MB3 LINE L1 5639 5739 -432 2204 85 10 0 chr4 9743242 9743536 -174545126 + AluSg SINE Alu 1 297 -13 1419 182 18 74 chr4 9743538 9743741 -174544921 + L1MB3 LINE L1 5823 5997 -186 2177 86 0 0 chr4 9743741 9744031 -174544631 - AluSx SINE Alu -22 290 1 1419 182 18 74 chr4 9744031 9744207 -174544455 + L1MB3 LINE L1 5997 6181 -2 202 256 56 44 chr4 9744556 9744646 -174544016 - MIR SINE MIR -159 103 13 2053 200 57 36 chr4 9744741 9745000 -174543662 + MER66B LTR ERV1 1 276 -210 1889 66 91 0 chr4 9745000 9745241 -174543421 + AluSg SINE Alu 1 263 -47 2053 200 57 36 chr4 9745241 9745455 -174543207 + MER66B LTR ERV1 276 484 -2 235 258 117 47 chr4 9745608 9745736 -174542926 - MIR SINE MIR -70 192 56 375 257 110 7 chr4 9746100 9746236 -174542426 - MER31-int LTR ERV1 -1632 3304 3155 2356 98 0 3 chr4 9746241 9746548 -174542114 + AluSx SINE Alu 2 307 -5 512 289 115 24 chr4 9746548 9746801 -174541861 + LTR16C LTR ERVL 108 383 -108 687 247 12 12 chr4 9747005 9747175 -174541487 + LTR16C LTR ERVL 314 483 -8 307 310 39 16 chr4 9747311 9747440 -174541222 - MIR SINE MIR -117 145 14 209 116 0 23 chr4 9747453 9747496 -174541166 + (GGGA)n Simple_repeat Simple_repeat 2 43 0 203 79 26 0 chr4 9748023 9748061 -174540601 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 238 121 35 35 chr4 9748080 9748138 -174540524 + GA-rich Low_complexity Low_complexity 1 58 0 300 316 89 73 chr4 9748581 9748897 -174539765 + L3 LINE CR1 1146 1466 -111 525 330 77 27 chr4 9749090 9749351 -174539311 + MLT1L LTR MaLR 101 374 -241 305 234 0 0 chr4 9750377 9750441 -174538221 - MIR SINE MIR -121 141 78 711 154 18 0 chr4 9750828 9750997 -174537665 + (TCCA)n Simple_repeat Simple_repeat 1 172 0 821 143 25 7 chr4 9751012 9751413 -174537249 + (TCCA)n Simple_repeat Simple_repeat 1 408 0 551 191 17 17 chr4 9751434 9751612 -174537050 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 697 151 30 0 chr4 9751627 9751793 -174536869 + (TCCA)n Simple_repeat Simple_repeat 2 172 0 204 349 84 44 chr4 9751939 9752214 -174536448 - L2 LINE L2 -173 3099 2814 246 267 103 42 chr4 9753259 9753377 -174535285 - MIR SINE MIR -59 149 35 377 82 0 87 chr4 9753958 9754142 -174534520 + (CACCT)n Simple_repeat Simple_repeat 3 170 0 1862 143 0 0 chr4 9754236 9754494 -174534168 - AluSx SINE Alu -11 301 44 2200 109 3 0 chr4 9754533 9754860 -174533802 + AluSx SINE Alu 1 328 0 2266 51 44 7 chr4 9754894 9755203 -174533459 + AluY SINE Alu 1 319 0 1804 144 38 17 chr4 9755975 9756266 -174532396 + AluJo SINE Alu 1 297 -15 182 37 37 0 chr4 9756311 9756338 -174532324 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 1702 177 7 7 chr4 9756338 9756637 -174532025 + AluJo SINE Alu 2 300 -12 187 291 70 23 chr4 9756672 9756758 -174531904 + L2 LINE L2 3003 3092 -221 199 303 110 0 chr4 9756850 9757005 -174531657 + L3 LINE CR1 1295 1466 -111 1662 180 68 22 chr4 9757027 9757313 -174531349 - MLT1B LTR MaLR -17 373 66 1024 101 0 150 chr4 9757313 9757540 -174531122 + 7SK RNA RNA 1 193 0 1662 180 68 22 chr4 9757540 9757608 -174531054 - MLT1B LTR MaLR -324 66 3 258 229 73 42 chr4 9757708 9757804 -174530858 + MIR SINE MIR 33 131 -77 243 315 120 0 chr4 9758694 9758802 -174529860 - L2 LINE L2 -8 3264 3144 234 322 51 0 chr4 9759000 9759118 -174529544 - LTR16C LTR ERVL -286 205 82 2305 123 31 14 chr4 9759344 9759702 -174528960 - THE1B LTR MaLR 0 364 1 180 0 0 0 chr4 9759704 9759724 -174528938 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 234 0 0 0 chr4 9760352 9760378 -174528284 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 301 200 124 57 chr4 9760398 9760503 -174528159 - L2 LINE L2 -28 3285 3174 295 345 79 0 chr4 9761376 9761541 -174527121 - MIR SINE MIR -37 225 48 242 73 24 0 chr4 9761735 9761776 -174526886 + (CA)n Simple_repeat Simple_repeat 1 42 0 2175 110 7 3 chr4 9762689 9762981 -174525681 - AluSq SINE Alu -20 293 1 1886 164 0 22 chr4 9762990 9763302 -174525360 - AluJb SINE Alu -7 305 1 2085 85 48 4 chr4 9763506 9763802 -174524860 + AluSq SINE Alu 1 308 0 2300 107 0 0 chr4 9764379 9764670 -174523992 + AluSx SINE Alu 1 291 -21 236 253 87 105 chr4 9764879 9765156 -174523506 - L2 LINE L2 -188 3084 2813 258 132 0 73 chr4 9766192 9766260 -174522402 + (CGGGG)n Simple_repeat Simple_repeat 1 63 0 257 252 27 63 chr4 9766414 9766525 -174522137 - L2 LINE L2 -14 3258 3152 198 272 29 68 chr4 9766492 9766595 -174522067 + MIR3 SINE MIR 58 156 -52 * 2260 126 7 0 chr4 9766843 9767153 -174521509 - AluSx SINE Alu 0 312 1 207 125 0 0 chr4 9767981 9768021 -174520641 + (CCCA)n Simple_repeat Simple_repeat 2 41 0 3904 194 48 20 chr4 9768153 9768342 -174520320 + L1MB7 LINE L1 5004 5186 -998 2072 154 0 6 chr4 9768342 9768654 -174520008 + AluJb SINE Alu 1 310 -2 3904 194 48 20 chr4 9768654 9769124 -174519538 + L1MB7 LINE L1 5186 5641 -543 2395 107 0 0 chr4 9769124 9769434 -174519228 + AluSg SINE Alu 1 310 0 3904 194 48 20 chr4 9769434 9769922 -174518740 + L1MB7 LINE L1 5641 6183 -1 2355 97 7 0 chr4 9769925 9770214 -174518448 - AluSx SINE Alu -21 291 1 2247 107 13 0 chr4 9770222 9770520 -174518142 - AluSq SINE Alu -11 302 1 630 246 75 0 chr4 9770535 9770815 -174517847 + L1M4 LINE L1 3030 3330 -2816 547 231 31 0 chr4 9771294 9771424 -174517238 + MLT1C-int LTR MaLR 1238 1371 0 765 199 65 15 chr4 9771424 9771625 -174517037 + MLT1C LTR MaLR 1 211 -256 2353 175 29 13 chr4 9771653 9772109 -174516553 - MLT1C LTR MaLR 0 467 5 2791 194 9 5 chr4 9772399 9772955 -174515707 - L1MB3 LINE L1 0 6183 5626 231 217 0 0 chr4 9773472 9773532 -174515130 + (CA)n Simple_repeat Simple_repeat 1 60 0 2426 89 3 19 chr4 9774213 9774527 -174514135 - AluSq SINE Alu -4 309 1 308 159 0 43 chr4 9775296 9775365 -174513297 - MLT1F1 LTR MaLR 0 567 502 455 310 108 8 chr4 9775365 9775750 -174512912 - L1MB3 LINE L1 -657 5507 5083 410 119 0 0 chr4 9775752 9775811 -174512851 + AluS SINE Alu 2 60 -251 1411 139 5 14 chr4 9775854 9776069 -174512593 + AluSg/x SINE Alu 66 278 -32 1021 104 6 6 chr4 9776071 9776234 -174512428 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 479 309 14 34 chr4 9776234 9776441 -174512221 - L1MB3 LINE L1 -1059 5087 4885 236 307 61 18 chr4 9776567 9776730 -174511932 + L1MC/D LINE L1 5720 5889 -1919 2382 101 3 0 chr4 9776732 9777040 -174511622 + AluSq SINE Alu 1 309 -4 2156 98 7 18 chr4 9777042 9777376 -174511286 + AluSq SINE Alu 1 331 0 376 255 35 41 chr4 9777761 9777906 -174510756 - L1ME4a LINE L1 -12 6109 5966 3829 80 51 0 chr4 9778053 9778580 -174510082 + MER41A LTR ERV1 1 554 0 267 119 24 0 chr4 9778580 9778622 -174510040 + MER41A-int LTR ERV1 1 43 -5903 1924 111 95 47 chr4 9778665 9779128 -174509534 + MER41A-int LTR ERV1 1 310 -5642 7553 141 202 32 chr4 9779149 9780764 -174507898 + MER41A-int LTR ERV1 129 2017 -3929 334 59 59 0 chr4 9780760 9780811 -174507851 + MER41A-int LTR ERV1 2167 2220 -3726 * 3128 128 55 43 chr4 9780807 9781214 -174507448 + MER41A-int LTR ERV1 3355 3755 -4061 2288 112 0 3 chr4 9781214 9781509 -174507153 + AluSg SINE Alu 1 294 -16 3128 128 55 43 chr4 9781509 9781612 -174507050 + MER41A-int LTR ERV1 3755 3855 -3961 2202 126 7 0 chr4 9781612 9781913 -174506749 + AluSq SINE Alu 1 303 -10 3128 128 55 43 chr4 9781913 9781941 -174506721 + MER41A-int LTR ERV1 3855 3881 -3935 2195 122 0 7 chr4 9781941 9782237 -174506425 + AluSx SINE Alu 1 294 -18 3128 128 55 43 chr4 9782237 9782618 -174506044 + MER41A-int LTR ERV1 3881 4417 -3399 11453 85 32 26 chr4 9782652 9783276 -174505386 + MER41A-int LTR ERV1 4191 4810 -1136 1978 167 0 0 chr4 9783276 9783570 -174505092 + AluSx SINE Alu 1 294 -18 11453 85 32 26 chr4 9783570 9784689 -174503973 + MER41A-int LTR ERV1 4810 5944 -2 3792 85 43 0 chr4 9784689 9785220 -174503442 + MER41A LTR ERV1 1 554 0 948 108 6 78 chr4 9785656 9785823 -174502839 + FRAM SINE Alu 1 40 0 815 223 54 0 chr4 9785848 9786032 -174502630 + MER58A DNA MER1_type 3 196 -28 353 274 152 22 chr4 9786246 9786516 -174502146 + LTR16A LTR ERVL 146 450 0 533 300 15 45 chr4 9786539 9786806 -174501856 - L2 LINE L2 -528 2786 2528 2229 95 3 0 chr4 9786897 9787247 -174501415 + AluSx SINE Alu 1 351 0 1229 214 137 51 chr4 9787457 9787947 -174500715 - LTR55 LTR ERV -16 532 1 371 321 70 12 chr4 9787948 9788291 -174500371 + L1 LINE L1 4288 4650 -1496 261 169 31 31 chr4 9788370 9788435 -174500227 + L1ME LINE L1 5714 5778 -343 860 172 0 0 chr4 9788462 9788596 -174500066 + AluJ SINE Alu 3 136 -176 6529 86 1 2 chr4 9788603 9790412 -174498250 + L1PA10 LINE L1 4352 6168 0 195 184 0 0 chr4 9790480 9790518 -174498144 + A-rich Low_complexity Low_complexity 1 38 0 2035 124 3 23 chr4 9790522 9790828 -174497834 + AluSg SINE Alu 1 300 -10 1996 125 45 14 chr4 9790830 9791117 -174497545 + AluSx SINE Alu 1 296 -16 28 29 0 0 chr4 9791117 9791152 -174497510 + AT_rich Low_complexity Low_complexity 1 35 0 1195 160 0 5 chr4 9791152 9791340 -174497322 + AluJ SINE Alu 117 303 -9 225 302 62 10 chr4 9792765 9792861 -174495801 - MLT1K LTR MaLR -346 242 142 205 196 0 22 chr4 9793089 9793135 -174495527 + (CCA)n Simple_repeat Simple_repeat 1 45 0 210 329 31 12 chr4 9793413 9793574 -174495088 + (CAGGG)n Simple_repeat Simple_repeat 5 168 0 1761 114 144 0 chr4 9794330 9794594 -174494068 + AluSx SINE Alu 1 302 0 1027 242 56 31 chr4 9795102 9795512 -174493150 + MLT1D LTR MaLR 35 493 -12 294 262 58 29 chr4 9795570 9795673 -174492989 + MIR SINE MIR 47 152 -110 977 238 188 18 chr4 9795826 9796225 -174492437 + MLT1J LTR MaLR 13 479 -32 235 219 0 47 chr4 9797563 9797627 -174491035 + MIR SINE MIR 136 196 -66 1234 270 100 37 chr4 9797628 9798110 -174490552 - MLT1E3 LTR MaLR -112 512 1 181 213 21 0 chr4 9798315 9798362 -174490300 + MIR SINE MIR 87 134 -74 2095 74 0 40 chr4 9799111 9799443 -174489219 - AluSx SINE Alu 0 320 1 1939 136 3 3 chr4 9799471 9799779 -174488883 + AluSx SINE Alu 1 308 -4 392 274 83 43 chr4 9799790 9800210 -174488452 - L1MC5 LINE L1 -50 7911 7475 26 64 0 0 chr4 9801340 9801387 -174487275 + GC_rich Low_complexity Low_complexity 1 47 0 279 291 139 10 chr4 9803264 9803495 -174485167 - L1MC5 LINE L1 -421 5821 5674 1899 58 0 19 chr4 9803602 9803861 -174484801 + AluY SINE Alu 45 298 -13 2135 89 3 20 chr4 9804170 9804474 -174484188 - AluSp SINE Alu -5 308 10 809 181 29 23 chr4 9804736 9804907 -174483755 + AluJo SINE Alu 117 288 -24 1532 137 129 0 chr4 9804917 9805180 -174483482 + AluSx SINE Alu 1 297 -15 213 108 0 0 chr4 9805191 9805228 -174483434 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 1762 156 31 0 chr4 9806330 9806619 -174482043 + AluJb SINE Alu 1 298 -14 2276 64 0 17 chr4 9806904 9807199 -174481463 + AluY SINE Alu 1 290 -21 237 33 0 0 chr4 9807200 9807230 -174481432 + (TA)n Simple_repeat Simple_repeat 2 31 0 211 306 124 16 chr4 9807712 9807833 -174480829 - MIR SINE MIR -116 146 13 472 332 142 0 chr4 9807975 9808270 -174480392 + L2 LINE L2 1996 2332 -982 23 0 0 0 chr4 9809618 9809641 -174479021 + AT_rich Low_complexity Low_complexity 1 23 0 334 192 55 0 chr4 9810495 9810568 -174478094 - MER46A DNA MER2_type -1 235 159 1060 167 171 42 chr4 9810568 9810855 -174477807 - MER7A DNA MER2_type -1 345 24 736 160 146 7 chr4 9810870 9811014 -174477648 - MER46A DNA MER2_type -72 164 1 2158 109 0 13 chr4 9811295 9811607 -174477055 + AluSq SINE Alu 1 308 -5 2340 70 0 0 chr4 9811932 9812217 -174476445 - AluSc SINE Alu -22 287 3 24 32 0 0 chr4 9812600 9812631 -174476031 + AT_rich Low_complexity Low_complexity 1 31 0 597 213 107 6 chr4 9812695 9812864 -174475798 - MER5A DNA MER1_type -3 186 1 307 290 32 11 chr4 9815869 9815962 -174472700 - MIR SINE MIR -63 145 51 227 228 101 13 chr4 9817062 9817141 -174471521 + MIR SINE MIR 63 148 -60 2526 52 0 0 chr4 9817829 9818137 -174470525 + AluY SINE Alu 1 308 -3 184 351 77 24 chr4 9818657 9818825 -174469837 - MIR SINE MIR -49 213 37 2061 196 102 35 chr4 9820314 9820371 -174468291 + L1MB3 LINE L1 5564 5616 -567 1850 121 15 0 chr4 9820371 9820636 -174468026 + AluJb SINE Alu 26 294 -18 2061 196 102 35 chr4 9820636 9821156 -174467506 + L1MB3 LINE L1 5616 6180 -3 21 0 0 0 chr4 9821158 9821179 -174467483 + AT_rich Low_complexity Low_complexity 1 21 0 522 241 106 6 chr4 9821216 9821386 -174467276 + MER5A DNA MER1_type 1 187 -2 324 354 73 6 chr4 9823159 9823323 -174465339 + MIR SINE MIR 10 184 -78 188 283 50 17 chr4 9823749 9823809 -174464853 + MER5A DNA MER1_type 128 189 0 199 196 22 43 chr4 9823919 9823965 -174464697 + MIR SINE MIR 2 46 -216 220 304 147 10 chr4 9824074 9824176 -174464486 - L2 LINE L2 -251 3062 2947 191 400 100 5 chr4 9824275 9824495 -174464167 - L2 LINE L2 -604 2710 2470 246 271 42 0 chr4 9825613 9825709 -174462953 + MIR SINE MIR 29 128 -134 231 123 15 77 chr4 9826174 9826304 -174462358 + (CCG)n Simple_repeat Simple_repeat 2 123 0 236 213 25 41 chr4 9826366 9826488 -174462174 + (CCG)n Simple_repeat Simple_repeat 2 121 0 238 320 0 0 chr4 9827279 9827354 -174461308 + G-rich Low_complexity Low_complexity 2 76 0 2331 63 0 16 chr4 9828955 9829258 -174459404 + AluY SINE Alu 1 298 -13 452 105 0 26 chr4 9829729 9829805 -174458857 - Alu SINE Alu -2 308 235 6781 189 16 37 chr4 9829805 9831114 -174457548 + SVA Other Other 104 1385 -1 5535 210 103 41 chr4 9831224 9831702 -174456960 + L1ME1 LINE L1 2093 2540 -4000 1538 187 35 7 chr4 9831702 9831991 -174456671 + AluJo SINE Alu 1 297 -15 5535 210 103 41 chr4 9831991 9833073 -174455589 + L1ME1 LINE L1 2540 3553 -2987 2395 63 0 0 chr4 9833073 9833372 -174455290 - AluY SINE Alu -12 299 1 2073 133 0 0 chr4 9833376 9833677 -174454985 - AluSx SINE Alu -6 306 6 5535 210 103 41 chr4 9833677 9834378 -174454284 + L1ME1 LINE L1 3555 4536 -2004 1840 230 105 14 chr4 9834375 9834944 -174453718 + L1ME1 LINE L1 5922 6542 -18 * 370 254 148 28 chr4 9834981 9835123 -174453539 + L1MC/D LINE L1 5612 5770 -2038 1568 78 207 8 chr4 9835387 9835629 -174453033 - AluSg1 SINE Alu -19 290 1 27 0 0 0 chr4 9835629 9835656 -174453006 + AT_rich Low_complexity Low_complexity 1 27 0 252 362 0 29 chr4 9836500 9836605 -174452057 + MIR SINE MIR 29 130 -132 551 280 176 3 chr4 9837422 9837758 -174450904 - L1MC4 LINE L1 -89 7953 7560 947 187 101 86 chr4 9837760 9838177 -174450485 - LTR37B LTR ERV1 -45 423 1 978 256 140 47 chr4 9838243 9838836 -174449826 - L1ME1 LINE L1 -9 6157 5466 21 0 0 0 chr4 9839564 9839585 -174449077 + GC_rich Low_complexity Low_complexity 1 21 0 822 155 99 6 chr4 9841240 9841401 -174447261 - FRAM SINE Alu -1 175 1 2185 95 14 0 chr4 9842528 9842823 -174445839 + AluSx SINE Alu 1 299 -13 350 233 33 42 chr4 9844514 9844634 -174444028 - MIR SINE MIR -116 146 28 367 259 123 0 chr4 9844732 9844872 -174443790 + MIR SINE MIR 58 216 -46 2230 111 0 0 chr4 9846089 9846377 -174442285 + AluSx SINE Alu 1 288 -24 2101 101 6 54 chr4 9846928 9847244 -174441418 + AluSq SINE Alu 1 301 -12 2269 108 0 7 chr4 9847866 9848171 -174440491 - AluSc SINE Alu -6 303 1 2397 56 3 3 chr4 9848200 9848484 -174440178 - AluY SINE Alu -16 295 12 1629 60 0 0 chr4 9848920 9849137 -174439525 + GSAT Satellite centromeric 1 217 0 754 123 13 175 chr4 9849372 9849600 -174439062 + 7SK RNA RNA 1 191 -2 2370 90 3 0 chr4 9849704 9850003 -174438659 + AluSx SINE Alu 1 300 -12 1784 159 68 3 chr4 9850011 9850364 -174438298 + L1MB3 LINE L1 5775 6150 -33 2196 108 31 0 chr4 9850448 9850736 -174437926 + AluSg SINE Alu 1 297 -13 429 273 46 41 chr4 9850749 9850892 -174437770 + L1ME3A LINE L1 5959 6105 -65 2346 110 0 0 chr4 9850892 9851200 -174437462 - AluSx SINE Alu -4 308 1 429 273 46 41 chr4 9851200 9851250 -174437412 + L1ME3A LINE L1 6105 6153 -17 216 290 195 6 chr4 9851681 9851850 -174436812 + L2 LINE L2 2558 2758 -556 192 355 11 32 chr4 9852001 9852094 -174436568 + L2 LINE L2 2928 3018 -254 360 278 102 24 chr4 9852678 9852883 -174435779 - MIR SINE MIR -34 228 8 202 275 110 28 chr4 9853363 9853472 -174435190 + L2 LINE L2 3150 3267 -5 197 318 136 45 chr4 9855176 9855374 -174433288 - MIR SINE MIR -26 236 21 1907 146 3 23 chr4 9856082 9856384 -174432278 + AluSx SINE Alu 4 299 -13 2308 111 0 13 chr4 9857478 9857614 -174431048 + AluSx SINE Alu 1 137 -175 2246 112 0 3 chr4 9857614 9857910 -174430752 + AluSg SINE Alu 1 295 -15 2308 111 0 13 chr4 9857910 9858080 -174430582 + AluSx SINE Alu 137 303 -9 691 191 37 0 chr4 9858419 9858555 -174430107 + FLAM_C SINE Alu 2 142 -1 207 0 0 0 chr4 9858637 9858660 -174430002 + (TG)n Simple_repeat Simple_repeat 2 24 0 232 269 147 9 chr4 9860339 9860455 -174428207 + MIR SINE MIR 45 177 -69 2423 80 7 0 chr4 9860775 9861076 -174427586 - AluSq SINE Alu -10 303 1 351 270 81 9 chr4 9863754 9863865 -174424797 - MIR SINE MIR -72 136 18 262 0 53 0 chr4 9863901 9863939 -174424723 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 2038 125 0 4 chr4 9863944 9864223 -174424439 - AluSx SINE Alu -34 278 1 2403 53 13 20 chr4 9864384 9864686 -174423976 + AluY SINE Alu 1 300 -11 466 304 67 17 chr4 9864706 9864946 -174423716 + L1ME LINE L1 5532 5783 -338 25 31 0 0 chr4 9865329 9865361 -174423301 + AT_rich Low_complexity Low_complexity 1 32 0 524 282 73 10 chr4 9865514 9865720 -174422942 - MER20 DNA MER1_type 0 219 1 2612 40 0 20 chr4 9866109 9866413 -174422249 - AluY SINE Alu -13 298 1 332 330 51 25 chr4 9866508 9866705 -174421957 + MIR SINE MIR 59 260 -2 419 282 38 72 chr4 9868928 9869190 -174419472 + MER112 DNA MER1_type 2 254 -2 352 318 0 80 chr4 9869339 9869383 -174419279 - MIR3 SINE MIR -50 158 112 2222 124 3 0 chr4 9869383 9869689 -174418973 + AluSx SINE Alu 1 307 -5 352 318 0 80 chr4 9869689 9869795 -174418867 - MIR3 SINE MIR -96 112 20 2226 100 7 0 chr4 9871383 9871684 -174416978 - AluY SINE Alu -8 303 1 925 155 20 0 chr4 9873158 9873341 -174415321 - AluSg/x SINE Alu 0 318 133 263 326 10 10 chr4 9873341 9873439 -174415223 + MIR SINE MIR 109 206 -56 1905 182 3 0 chr4 9873788 9874090 -174414572 + AluJb SINE Alu 1 303 -9 27 73 0 0 chr4 9874131 9874186 -174414476 + AT_rich Low_complexity Low_complexity 1 55 0 2351 104 0 10 chr4 9875445 9875754 -174412908 + AluSg1 SINE Alu 1 306 -3 397 199 202 12 chr4 9878485 9878609 -174410053 - AluJb SINE Alu -8 294 174 660 256 105 77 chr4 9878627 9879085 -174409577 - L1MC5 LINE L1 -30 7931 7487 2133 158 0 0 chr4 9879085 9879395 -174409267 + AluJb SINE Alu 1 310 -2 2182 114 0 14 chr4 9879401 9879698 -174408964 + AluSg SINE Alu 1 293 -17 660 256 105 77 chr4 9879698 9879728 -174408934 - L1MC5 LINE L1 -478 7483 7422 494 218 17 28 chr4 9879768 9880387 -174408275 + (CA)n Simple_repeat Simple_repeat 1 612 0 266 190 16 38 chr4 9880479 9880663 -174407999 + (CA)n Simple_repeat Simple_repeat 1 180 0 2500 79 0 3 chr4 9880893 9881196 -174407466 - AluSg SINE Alu -8 302 1 1820 184 0 9 chr4 9881296 9881611 -174407051 - AluJb SINE Alu 0 312 1 2042 116 46 0 chr4 9882029 9882313 -174406349 + AluSg SINE Alu 1 297 -13 1981 104 42 21 chr4 9886412 9886699 -174401963 + AluSc SINE Alu 1 293 -16 310 330 69 12 chr4 9887794 9887967 -174400695 + MIR SINE MIR 16 198 -64 322 288 117 0 chr4 9888229 9888340 -174400322 - MIR3 SINE MIR -52 156 33 2445 93 0 0 chr4 9888480 9888780 -174399882 + AluSx SINE Alu 1 300 -12 2437 78 0 10 chr4 9889181 9889477 -174399185 + AluSg SINE Alu 1 293 -17 191 275 0 0 chr4 9889928 9889968 -174398694 + L2 LINE L2 3262 3301 -12 314 280 110 8 chr4 9890000 9890118 -174398544 - L2 LINE L2 0 3272 3143 1586 185 10 27 chr4 9890850 9891142 -174397520 - AluJb SINE Alu -25 287 1 2415 73 0 16 chr4 9891277 9891590 -174397072 + AluSg SINE Alu 1 308 -2 2119 79 0 18 chr4 9892061 9892338 -174396324 - AluY SINE Alu -13 298 27 302 388 91 19 chr4 9893234 9893597 -174395065 + L1MEd LINE L1 802 1190 -4929 831 75 0 0 chr4 9893610 9893730 -174394932 + (TCCA)n Simple_repeat Simple_repeat 1 120 0 382 287 16 25 chr4 9893730 9893852 -174394810 - L2 LINE L2 -13 3300 3180 372 248 90 8 chr4 9894713 9894846 -174393816 + MLT1J2 LTR MaLR 67 210 -240 404 211 22 0 chr4 9894938 9895028 -174393634 + MLT1I LTR MaLR 317 408 -1 231 342 40 20 chr4 9895209 9895358 -174393304 + L2 LINE L2 2636 2787 -527 241 250 65 9 chr4 9895619 9895727 -174392935 + MER103 DNA DNA 6 119 -47 189 238 0 0 chr4 9895814 9895856 -174392806 - MIR SINE MIR -55 153 112 477 264 48 0 chr4 9896178 9896303 -174392359 - MIR SINE MIR -36 226 96 963 213 54 77 chr4 9896468 9896778 -174391884 + MLT1A1 LTR MaLR 1 304 -61 1664 171 0 49 chr4 9896778 9897083 -174391579 - AluJb SINE Alu -22 290 1 963 213 54 77 chr4 9897083 9897125 -174391537 + MLT1A1 LTR MaLR 304 345 -20 436 306 19 32 chr4 9897672 9897829 -174390833 + MIR SINE MIR 9 163 -99 236 360 56 8 chr4 9897940 9898065 -174390597 + L2 LINE L2 3103 3233 -39 613 219 27 27 chr4 9898400 9898546 -174390116 + L2 LINE L2 3167 3312 -1 427 282 63 14 chr4 9899495 9899637 -174389025 - MER5B DNA MER1_type -16 162 14 566 208 101 0 chr4 9899658 9899807 -174388855 - MER5A DNA MER1_type 0 189 26 193 331 39 47 chr4 9899786 9899913 -174388749 - MIR SINE MIR -96 166 41 * 410 288 88 12 chr4 9899890 9900060 -174388602 + MIR SINE MIR 80 262 0 180 367 60 60 chr4 9900096 9900295 -174388367 + L2 LINE L2 3032 3230 -42 337 280 150 24 chr4 9900768 9900975 -174387687 + L2 LINE L2 2553 2785 -529 264 308 98 49 chr4 9900972 9901258 -174387404 + L2 LINE L2 2921 3220 -52 * 457 309 53 0 chr4 9901665 9901817 -174386845 + MIR SINE MIR 30 189 -73 553 172 15 20 chr4 9901926 9902318 -174386344 + CT-rich Low_complexity Low_complexity 1 390 0 1177 188 64 38 chr4 9902318 9902584 -174386078 - AluJb SINE Alu -39 273 1 267 278 121 52 chr4 9902640 9902813 -174385849 - MIR3 SINE MIR -20 188 4 23 92 0 0 chr4 9904122 9904187 -174384475 + GC_rich Low_complexity Low_complexity 1 65 0 27 85 0 11 chr4 9904365 9904434 -174384228 + GC_rich Low_complexity Low_complexity 1 70 -23 198 71 0 0 chr4 9904434 9904462 -174384200 + (CTG)n Simple_repeat Simple_repeat 1 28 0 27 85 0 11 chr4 9904462 9904486 -174384176 + GC_rich Low_complexity Low_complexity 70 93 0 198 0 0 0 chr4 9906858 9906880 -174381782 + (TG)n Simple_repeat Simple_repeat 2 23 0 292 74 0 37 chr4 9908284 9908338 -174380324 + (TCCCC)n Simple_repeat Simple_repeat 2 53 0 2375 158 21 8 chr4 9908659 9909044 -174379618 - MLT1B LTR MaLR 0 390 1 240 296 83 15 chr4 9909184 9909316 -174379346 - L2 LINE L2 -213 3059 2919 714 319 32 0 chr4 9909486 9909702 -174378960 + MIR SINE MIR 28 250 -12 214 360 45 0 chr4 9911769 9911880 -174376782 + L3 LINE CR1 1415 1530 -47 352 250 11 22 chr4 9912124 9912216 -174376446 + MIR3 SINE MIR 109 199 -9 247 247 49 23 chr4 9912352 9912466 -174376196 + MIR SINE MIR 41 153 -62 330 301 204 28 chr4 9912642 9912961 -174375701 - L2 LINE L2 -20 3252 2878 491 377 20 16 chr4 9914575 9914819 -174373843 - MIR SINE MIR 0 262 18 1990 121 28 0 chr4 9914832 9915114 -174373548 + AluSx SINE Alu 1 290 -22 633 99 0 0 chr4 9915128 9915209 -174373453 + AluSg/x SINE Alu 210 290 -22 633 99 0 0 chr4 9915223 9915304 -174373358 + AluSg/x SINE Alu 210 290 -22 3163 176 15 19 chr4 9915324 9915902 -174372760 - L1MB3 LINE L1 0 6183 5606 1857 164 0 7 chr4 9915902 9916200 -174372462 - AluJo SINE Alu -16 296 1 3163 176 15 19 chr4 9916200 9916216 -174372446 - L1MB3 LINE L1 -577 5606 5591 434 218 32 51 chr4 9916955 9917111 -174371551 - Charlie4 DNA MER1_type 0 1961 1809 893 234 40 4 chr4 9917143 9917395 -174371267 - Charlie4 DNA MER1_type -1667 294 34 2258 96 0 10 chr4 9917443 9917757 -174370905 + AluSx SINE Alu 1 311 -1 320 239 103 60 chr4 9917899 9918016 -174370646 + L2 LINE L2 3175 3296 -17 222 37 0 0 chr4 9918511 9918538 -174370124 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 235 321 12 0 chr4 9920122 9920203 -174368459 - L2 LINE L2 -1 3271 3190 216 0 0 0 chr4 9920318 9920342 -174368320 + (GCTTG)n Simple_repeat Simple_repeat 3 26 0 185 400 94 12 chr4 9920713 9920883 -174367779 + MIR SINE MIR 60 243 -19 1677 166 11 0 chr4 9921984 9922261 -174366401 - AluJo SINE Alu -30 282 3 191 310 186 21 chr4 9922323 9922468 -174366194 + MIR SINE MIR 57 225 -37 207 69 0 0 chr4 9922896 9922925 -174365737 + (GGGA)n Simple_repeat Simple_repeat 2 30 0 1980 109 60 0 chr4 9923067 9923351 -174365311 - AluSx SINE Alu -11 301 1 867 200 23 36 chr4 9924045 9924265 -174364397 - MLT1K LTR MaLR 0 588 372 361 269 31 8 chr4 9924335 9924465 -174364197 - MLT1K LTR MaLR -331 257 125 412 260 32 8 chr4 9925331 9925454 -174363208 - MIR SINE MIR -63 145 20 1664 207 102 8 chr4 9925843 9926205 -174362457 + MSTD LTR MaLR 1 396 0 250 333 0 0 chr4 9926329 9926398 -174362264 - L3 LINE CR1 -101 1476 1408 4400 127 44 83 chr4 9926617 9927632 -174361030 + pTR5 LTR ERV1 729 2025 -413 364 235 10 0 chr4 9927632 9927730 -174360932 + LTR30 LTR ERV1 544 642 -80 1229 98 57 0 chr4 9927731 9927925 -174360737 + LTR12 LTR ERV1 377 581 -133 1860 214 110 2 chr4 9928071 9928524 -174360138 - MLT1D LTR MaLR 0 505 4 331 264 104 57 chr4 9930558 9930770 -174357892 + L2 LINE L2 2747 2968 -346 270 300 25 0 chr4 9931048 9931128 -174357534 - MER5B DNA MER1_type -43 135 54 2568 90 33 11 chr4 9931147 9931514 -174357148 - THE1C LTR MaLR 0 375 1 219 315 41 68 chr4 9932944 9933090 -174355572 - MER5A DNA MER1_type -1 188 47 * 232 287 52 73 chr4 9932966 9933102 -174355560 + MER5A DNA MER1_type 35 167 -22 392 323 138 4 chr4 9933303 9933535 -174355127 - L2 LINE L2 -9 3263 3001 413 300 45 35 chr4 9933536 9933736 -174354926 - L2 LINE L2 -4 3309 3108 1478 246 130 6 chr4 9933847 9934354 -174354308 + L1MB8 LINE L1 5603 6172 -6 490 367 72 30 chr4 9934989 9935017 -174353645 - L1ME4a LINE L1 -196 5925 5900 237 33 0 0 chr4 9935017 9935047 -174353615 + (CA)n Simple_repeat Simple_repeat 1 30 0 490 367 72 30 chr4 9935047 9935323 -174353339 - L1ME4a LINE L1 -221 5900 5608 231 297 148 16 chr4 9935543 9935671 -174352991 + MIR SINE MIR 28 172 -90 871 135 135 6 chr4 9936257 9936435 -174352227 - MSTA LTR MaLR -227 201 1 257 333 0 0 chr4 9936758 9936842 -174351820 + L2 LINE L2 2987 3070 -202 289 304 72 16 chr4 9936975 9937100 -174351562 + L2 LINE L2 3134 3265 -7 638 304 65 0 chr4 9937496 9937743 -174350919 - MLT1G LTR MaLR -316 274 12 318 292 205 11 chr4 9937868 9938053 -174350609 - MIR SINE MIR -8 254 34 1335 196 108 25 chr4 9939740 9940093 -174348569 - MLT1B LTR MaLR -8 382 1 307 130 0 14 chr4 9942571 9942632 -174346030 - MLT2D LTR ERVL 0 414 367 1262 205 28 75 chr4 9942701 9943103 -174345559 - MLT2D LTR ERVL -40 480 1 390 91 0 0 chr4 9943151 9943206 -174345456 + (TCCA)n Simple_repeat Simple_repeat 4 58 0 195 260 20 0 chr4 9943209 9943259 -174345403 - L2 LINE L2 -1 3312 3262 206 297 55 61 chr4 9943316 9943481 -174345181 - L2 LINE L2 -162 3110 2947 349 339 60 12 chr4 9945348 9945516 -174343146 + MIR SINE MIR 36 211 -51 247 176 20 0 chr4 9945534 9945585 -174343077 + MIR3 SINE MIR 105 156 -52 209 273 0 0 chr4 9946349 9946393 -174342269 + L2 LINE L2 3215 3258 -14 398 308 0 0 chr4 9946979 9947086 -174341576 - MIR SINE MIR -75 187 81 266 222 86 37 chr4 9947611 9947692 -174340970 - L2 LINE L2 -49 3264 3180 579 284 72 18 chr4 9947777 9948111 -174340551 - L2 LINE L2 -143 3170 2819 2156 121 3 0 chr4 9948216 9948522 -174340140 - AluSx SINE Alu -5 307 1 228 67 0 0 chr4 9949169 9949199 -174339463 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 285 196 0 0 chr4 9949312 9949363 -174339299 + MIR SINE MIR 104 154 -108 192 231 0 0 chr4 9950187 9950239 -174338423 + (TG)n Simple_repeat Simple_repeat 1 52 0 206 301 43 21 chr4 9951689 9951782 -174336880 + MIR SINE MIR 45 139 -69 341 148 0 0 chr4 9952508 9952569 -174336093 - MER53 DNA DNA -2 187 127 2126 85 0 14 chr4 9952569 9952870 -174335792 - AluSq SINE Alu 0 307 11 257 303 28 56 chr4 9953141 9953283 -174335379 - L2 LINE L2 -18 3295 3158 1640 164 20 30 chr4 9953839 9954138 -174334524 - AluJo SINE Alu -10 302 7 656 252 86 13 chr4 9955018 9955434 -174333228 - MER68 LTR ERV1 -9 553 72 413 294 94 25 chr4 9957104 9957264 -174331398 + MIR SINE MIR 20 190 -72 326 247 27 0 chr4 9957481 9957554 -174331108 - MIR SINE MIR -56 152 78 477 242 61 15 chr4 9960094 9960226 -174328436 + MIR SINE MIR 77 214 -48 241 298 70 9 chr4 9960271 9960385 -174328277 + MIR3 SINE MIR 83 203 -5 869 231 141 27 chr4 9960725 9961241 -174327421 - MLT1G LTR MaLR 0 577 19 532 291 51 15 chr4 9961258 9961454 -174327208 - MIR SINE MIR -12 250 48 2033 121 0 3 chr4 9961663 9961981 -174326681 + AluSx SINE Alu 1 317 0 368 296 38 8 chr4 9962670 9962802 -174325860 + MIR3 SINE MIR 22 157 -51 476 283 0 50 chr4 9962807 9962987 -174325675 - MLT1K LTR MaLR -16 572 402 264 342 51 25 chr4 9963214 9963372 -174325290 + MIR SINE MIR 5 166 -96 273 284 32 65 chr4 9963375 9963530 -174325132 - MLT1J LTR MaLR -231 280 131 310 247 26 13 chr4 9964161 9964238 -174324424 + L1ME4a LINE L1 6044 6121 0 310 281 9 53 chr4 9964340 9964454 -174324208 + MER94 DNA DNA 3 111 -23 3412 175 27 2 chr4 9965619 9966371 -174322291 + L1PB4 LINE L1 5381 6164 -2 219 366 59 0 chr4 9966434 9966535 -174322127 + MIR SINE MIR 75 181 -81 185 229 213 0 chr4 9966590 9966651 -174322011 - MER5A DNA MER1_type -84 105 32 249 257 0 0 chr4 9966713 9966783 -174321879 + (TG)n Simple_repeat Simple_repeat 1 70 0 316 278 201 16 chr4 9966843 9967037 -174321625 - L2 LINE L2 -42 3230 3001 2237 86 7 0 chr4 9967894 9968184 -174320478 - AluSg SINE Alu -13 297 6 293 209 118 18 chr4 9968185 9968295 -174320367 + MER113 DNA MER1_type? 99 219 -302 182 146 98 24 chr4 9968572 9968613 -174320049 - L3 LINE CR1 -127 1450 1407 254 324 152 7 chr4 9969273 9969418 -174319244 + MIR SINE MIR 17 182 -80 212 362 98 6 chr4 9969559 9969733 -174318929 - L3 LINE CR1 -196 1381 1192 2359 111 43 25 chr4 9970310 9970678 -174317984 + THE1C LTR MaLR 1 375 0 363 356 132 24 chr4 9971692 9971942 -174316720 + L1ME4a LINE L1 5687 5963 -158 315 272 60 54 chr4 9972291 9972390 -174316272 + L1ME4a LINE L1 5936 6038 -83 2229 114 0 0 chr4 9972390 9972697 -174315965 - AluSx SINE Alu -5 307 1 315 272 60 54 chr4 9972697 9972781 -174315881 + L1ME4a LINE L1 6038 6120 -1 365 258 138 13 chr4 9972976 9973135 -174315527 - MIR SINE MIR -31 231 53 1119 243 57 33 chr4 9974744 9974790 -174313872 + L1M4 LINE L1 4895 4938 -1208 774 32 0 0 chr4 9974790 9974883 -174313779 + (GAAA)n Simple_repeat Simple_repeat 3 95 0 1119 243 57 33 chr4 9974883 9975200 -174313462 + L1M4 LINE L1 4938 5246 -900 2254 102 3 13 chr4 9975200 9975514 -174313148 + AluSx SINE Alu 1 311 -1 180 0 0 0 chr4 9975516 9975536 -174313126 + (TA)n Simple_repeat Simple_repeat 1 20 0 1119 243 57 33 chr4 9975536 9975625 -174313037 + L1M4 LINE L1 5246 5362 -784 200 360 27 36 chr4 9975991 9976102 -174312560 + MIR SINE MIR 35 144 -118 282 301 109 65 chr4 9976775 9977177 -174311485 + L2 LINE L2 2810 3229 -43 216 192 19 39 chr4 9977273 9977325 -174311337 - L2 LINE L2 -14 3258 3208 250 286 134 9 chr4 9977575 9977687 -174310975 - MER96 DNA MER1_type? -39 136 11 189 299 41 62 chr4 9978222 9978319 -174310343 + MIR3 SINE MIR 88 182 -26 316 309 158 29 chr4 9978791 9978993 -174309669 - MIR SINE MIR -43 219 3 196 231 0 0 chr4 9979687 9979726 -174308936 + L2 LINE L2 3263 3301 -12 222 362 51 22 chr4 9979834 9979972 -174308690 + MIR3 SINE MIR 5 146 -62 334 220 66 0 chr4 9980043 9980134 -174308528 + MER5A DNA MER1_type 10 106 -83 187 267 287 0 chr4 9980068 9980169 -174308493 - MER5A DNA MER1_type -24 165 36 * 190 332 72 9 chr4 9980574 9980797 -174307865 + L2 LINE L2 2738 2974 -340 211 336 60 0 chr4 9980834 9980950 -174307712 + L2 LINE L2 3141 3263 -9 182 331 83 53 chr4 9980979 9981148 -174307514 + MIR SINE MIR 45 218 -44 1583 202 80 36 chr4 9981456 9981871 -174306791 + MLT1D LTR MaLR 1 433 -72 532 216 16 0 chr4 9981876 9982001 -174306661 - MER47A DNA MER2_type 0 366 240 530 232 0 0 chr4 9982002 9982114 -174306548 - MER47A DNA MER2_type -254 112 1 351 203 0 0 chr4 9982114 9982183 -174306479 + MLT1D LTR MaLR 437 505 0 417 290 36 67 chr4 9983318 9983475 -174305187 + MIR SINE MIR 45 208 -54 2120 114 0 31 chr4 9983475 9983792 -174304870 + AluSx SINE Alu 1 307 -5 417 290 36 67 chr4 9983792 9983828 -174304834 + MIR SINE MIR 208 244 -18 743 263 91 45 chr4 9984299 9984695 -174303967 + MLT1C LTR MaLR 54 467 0 220 246 87 43 chr4 9985702 9985840 -174302822 + L2 LINE L2 2921 3064 -208 205 378 64 13 chr4 9986050 9986206 -174302456 - L3 LINE CR1 -7 1570 1407 254 284 28 57 chr4 9986632 9986773 -174301889 - MIR SINE MIR -90 172 36 944 135 12 0 chr4 9986884 9987054 -174301608 + (TTCA)n Simple_repeat Simple_repeat 2 173 0 321 274 186 0 chr4 9987065 9987167 -174301495 - L2 LINE L2 -15 3257 3137 220 271 82 16 chr4 9987240 9987362 -174301300 - L2 LINE L2 -1469 1845 1716 * 233 241 0 0 chr4 9987356 9987410 -174301252 + L2 LINE L2 3218 3271 -1 201 262 153 38 chr4 9987704 9987887 -174300775 - L2 LINE L2 -411 2903 2700 372 324 33 2 chr4 9988221 9988426 -174300236 + MIR3 SINE MIR 1 259 -3 308 280 136 8 chr4 9988555 9988680 -174299982 - MIR3 SINE MIR -32 176 36 730 254 149 11 chr4 9988686 9988961 -174299701 - MLT1C LTR MaLR -21 446 134 2289 95 0 0 chr4 9988995 9989291 -174299371 - AluSq SINE Alu -17 296 1 337 273 97 48 chr4 9990513 9990678 -174297984 - MIR3 SINE MIR -22 186 14 575 232 53 0 chr4 9992333 9992484 -174296178 - MLT1B LTR MaLR 0 390 232 235 200 0 0 chr4 9992504 9992549 -174296113 + G-rich Low_complexity Low_complexity 1 45 0 206 23 93 0 chr4 9992550 9992593 -174296069 + GA-rich Low_complexity Low_complexity 2 48 0 483 226 82 7 chr4 9992594 9992740 -174295922 - MLT1B LTR MaLR -205 185 29 196 178 22 0 chr4 9992823 9992868 -174295794 + L2 LINE L2 3014 3059 -213 391 296 254 0 chr4 9993162 9993442 -174295220 + L2 LINE L2 2912 3262 -10 188 268 36 0 chr4 9993455 9993511 -174295151 + L2 LINE L2 3207 3264 -8 289 357 56 16 chr4 9994492 9994618 -174294044 - MIR3 SINE MIR -63 145 15 210 310 17 0 chr4 9994626 9994684 -174293978 + (TG)n Simple_repeat Simple_repeat 2 60 0 237 33 0 0 chr4 9994749 9994779 -174293883 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 323 328 156 25 chr4 9994791 9995283 -174293379 - L2 LINE L2 -25 3247 2682 183 325 12 62 chr4 9995748 9995828 -174292834 - MIR SINE MIR -123 139 64 2418 66 0 3 chr4 9996980 9997281 -174291381 + AluY SINE Alu 1 300 -11 386 139 14 0 chr4 9998601 9998673 -174289989 + CT-rich Low_complexity Low_complexity 3 75 0 1352 198 38 108 chr4 9998818 9999318 -174289344 + MLT1C LTR MaLR 1 465 -2 2050 126 0 3 chr4 9999336 9999630 -174289032 - AluSx SINE Alu -15 297 5 880 317 110 23 chr4 10000564 10001195 -174287467 + L2 LINE L2 2613 3310 -3 308 250 0 33 chr4 10001812 10001904 -174286758 - HsTC2 DNA Tc2 -1809 89 1 2634 141 62 2 chr4 10003773 10004176 -174284486 - MSTA LTR MaLR 0 428 2 180 336 96 0 chr4 10006475 10006579 -174282083 + L2 LINE L2 2982 3095 -177 391 275 64 0 chr4 10007459 10007568 -174281094 - MIR SINE MIR -100 162 47 789 185 13 0 chr4 10010026 10010183 -174278479 - L1MC/D LINE L1 -699 5634 5476 320 319 21 42 chr4 10010183 10010261 -174278401 + MIR SINE MIR 118 193 -69 192 40 0 0 chr4 10010261 10010286 -174278376 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 320 319 21 42 chr4 10010286 10010351 -174278311 + MIR SINE MIR 193 258 -4 310 331 128 12 chr4 10012505 10012677 -174275985 + MIR SINE MIR 25 216 -46 196 275 12 62 chr4 10012801 10012881 -174275781 - MIR3 SINE MIR -6 202 127 377 258 129 12 chr4 10013062 10013225 -174275437 - L2 LINE L2 -257 3056 2875 931 71 20 45 chr4 10013735 10014058 -174274604 + (TGGA)n Simple_repeat Simple_repeat 1 315 0 297 51 0 0 chr4 10014070 10014109 -174274553 + (TGGA)n Simple_repeat Simple_repeat 1 39 0 224 297 203 7 chr4 10014153 10014291 -174274371 - MIR3 SINE MIR -41 167 3 22 56 0 0 chr4 10014356 10014392 -174274270 + AT_rich Low_complexity Low_complexity 1 36 0 1410 189 79 16 chr4 10015059 10015425 -174273237 - MLT1C LTR MaLR -76 391 3 214 316 13 13 chr4 10015609 10015688 -174272974 - MIR SINE MIR -117 145 67 332 298 0 10 chr4 10015785 10015889 -174272773 - MIR SINE MIR -61 147 45 283 241 60 0 chr4 10015985 10016068 -174272594 + MER81 DNA DNA 27 114 0 372 298 128 30 chr4 10016901 10017136 -174271526 + L2 LINE L2 2906 3163 -109 2261 206 27 2 chr4 10017354 10017792 -174270870 - L1MB5 LINE L1 -8 6166 5718 190 227 68 0 chr4 10017817 10017861 -174270801 - L2 LINE L2 -23 3290 3244 238 264 35 0 chr4 10017962 10018049 -174270613 + MER45 DNA AcHobo 26 115 -1466 309 357 8 16 chr4 10018946 10019075 -174269587 + MIR SINE MIR 17 144 -118 316 248 204 0 chr4 10019229 10019342 -174269320 + MIR SINE MIR 8 143 -119 180 359 39 10 chr4 10021023 10021126 -174267536 - MIR3 SINE MIR -6 202 97 194 283 19 0 chr4 10021244 10021297 -174267365 + MIR SINE MIR 90 143 -65 3144 222 34 4 chr4 10021601 10022426 -174266236 - L1M4 LINE L1 -2885 3261 2412 303 311 0 49 chr4 10022555 10022677 -174265985 + L2 LINE L2 3197 3312 -1 26 30 0 0 chr4 10022696 10022729 -174265933 + AT_rich Low_complexity Low_complexity 1 33 0 604 304 68 27 chr4 10023068 10023288 -174265374 - MIR SINE MIR -21 241 13 461 296 39 82 chr4 10023988 10024194 -174264468 - MIR SINE MIR 0 262 66 2168 113 0 3 chr4 10024200 10024510 -174264152 - AluSq SINE Alu -4 309 1 204 178 0 44 chr4 10027287 10027332 -174261330 + CT-rich Low_complexity Low_complexity 3 45 0 623 225 21 0 chr4 10027333 10027613 -174261049 + (TCCA)n Simple_repeat Simple_repeat 1 285 0 208 231 26 0 chr4 10027632 10027710 -174260952 + (TCCA)n Simple_repeat Simple_repeat 1 80 0 314 279 81 62 chr4 10027823 10027984 -174260678 + L2 LINE L2 3109 3272 0 274 303 107 0 chr4 10027990 10028112 -174260550 - MIR3 SINE MIR -45 163 29 201 265 118 0 chr4 10028598 10028666 -174259996 - MIR3 SINE MIR -41 167 92 238 273 0 0 chr4 10029163 10029218 -174259444 + L2 LINE L2 3208 3262 -10 215 299 51 26 chr4 10030118 10030235 -174258427 + MIR SINE MIR 17 136 -72 186 43 0 0 chr4 10030355 10030378 -174258284 + (GA)n Simple_repeat Simple_repeat 1 23 0 544 278 44 15 chr4 10031034 10031239 -174257423 - MLT1J2 LTR MaLR 0 450 240 553 280 113 27 chr4 10031604 10031933 -174256729 + L2 LINE L2 2828 3184 -129 1103 193 44 139 chr4 10031944 10032353 -174256309 - MLT1A2 LTR MaLR -4 370 1 347 287 130 0 chr4 10032366 10032474 -174256188 + L2 LINE L2 3191 3312 -1 397 278 98 40 chr4 10033904 10034077 -174254585 - MIR SINE MIR -12 250 68 318 257 119 9 chr4 10034354 10034463 -174254199 - L1M4 LINE L1 -3353 2793 2673 1552 204 40 3 chr4 10034486 10034678 -174253984 - AluJo SINE Alu -2 310 102 2030 134 23 7 chr4 10034678 10034985 -174253677 + AluSx SINE Alu 1 312 0 1552 204 40 3 chr4 10034985 10035091 -174253571 - AluJo SINE Alu -210 102 1 504 328 25 20 chr4 10035794 10036056 -174252606 - MIR SINE MIR 0 262 2 2035 105 0 20 chr4 10036226 10036520 -174252142 - AluJb SINE Alu -2 310 23 394 220 0 36 chr4 10037058 10037226 -174251436 + CT-rich Low_complexity Low_complexity 1 162 0 294 377 16 0 chr4 10038583 10038705 -174249957 + MIR SINE MIR 75 198 -64 205 313 47 0 chr4 10039679 10039743 -174248919 + L3 LINE CR1 1263 1329 -248 771 281 51 23 chr4 10039823 10040218 -174248444 + MER115 DNA AcHobo 29 434 -259 529 279 8 0 chr4 10042525 10042654 -174246008 - MIR SINE MIR -39 223 94 517 273 16 0 chr4 10043195 10043323 -174245339 - L2 LINE L2 -1 3271 3142 247 79 26 0 chr4 10044318 10044356 -174244306 + L2 LINE L2 2745 2783 -531 964 281 72 36 chr4 10044366 10044757 -174243905 + L2 LINE L2 2887 3291 -22 270 116 0 0 chr4 10044759 10044802 -174243860 + (TG)n Simple_repeat Simple_repeat 2 44 0 304 295 76 19 chr4 10045921 10046026 -174242636 - MIR SINE MIR -29 233 123 380 198 25 136 chr4 10046060 10046222 -174242440 - L2 LINE L2 0 3313 3170 220 263 18 0 chr4 10046321 10046378 -174242284 + CT-rich Low_complexity Low_complexity 4 61 0 2390 66 3 0 chr4 10047018 10047320 -174241342 - AluY SINE Alu -8 303 1 295 140 0 53 chr4 10049438 10049495 -174239167 - MIR SINE MIR -61 147 94 312 256 17 0 chr4 10049746 10049918 -174238744 + (TG)n Simple_repeat Simple_repeat 1 175 0 323 350 50 7 chr4 10051164 10051311 -174237351 - MIR SINE MIR -61 147 14 586 223 0 0 chr4 10052200 10052321 -174236341 - MIR SINE MIR -62 200 80 2293 262 48 39 chr4 10052911 10053855 -174234807 - L1ME1 LINE L1 -4 6162 5201 2161 123 0 3 chr4 10053855 10054164 -174234498 - AluSc SINE Alu -1 308 1 2293 262 48 39 chr4 10054164 10054284 -174234378 - L1ME1 LINE L1 -965 5201 5084 233 299 188 17 chr4 10055268 10055385 -174233277 - L2 LINE L2 0 3272 3136 255 360 72 0 chr4 10055656 10055795 -174232867 + L2 LINE L2 2608 2756 -558 2342 87 0 0 chr4 10056317 10056628 -174232034 - AluY SINE Alu 0 311 1 2042 90 34 65 chr4 10056799 10057122 -174231540 - AluSq SINE Alu 0 313 1 195 304 0 0 chr4 10057313 10057359 -174231303 + MIR SINE MIR 217 262 0 205 303 130 34 chr4 10057568 10057806 -174230856 + L2 LINE L2 2908 3168 -104 877 157 6 9 chr4 10057910 10058250 -174230412 + (TCCA)n Simple_repeat Simple_repeat 1 338 0 204 296 0 102 chr4 10058273 10058371 -174230291 - L2 LINE L2 0 3272 3185 206 298 0 0 chr4 10058528 10058575 -174230087 + MIR SINE MIR 74 120 -142 317 154 0 0 chr4 10059896 10059948 -174228714 + MLT1B LTR MaLR 22 73 -317 536 304 85 27 chr4 10060075 10060299 -174228363 - MIR SINE MIR -4 258 22 317 273 219 11 chr4 10060456 10060639 -174228023 + MIR SINE MIR 21 241 -21 1783 236 31 5 chr4 10060719 10061164 -174227498 - L1ME1 LINE L1 -5 6161 5705 608 210 105 6 chr4 10061157 10061338 -174227324 - L1MCc LINE L1 -5058 1365 1167 * 1758 176 0 29 chr4 10061412 10061718 -174226944 + AluJo SINE Alu 1 297 -15 829 161 0 0 chr4 10062010 10062147 -174226515 + AluJo SINE Alu 1 137 -175 379 262 0 0 chr4 10112824 10112927 -174175735 + L1 LINE L1 4280 4382 -1764 197 330 152 35 chr4 10112927 10113345 -174175317 - L2 LINE L2 -45 3268 2738 458 317 49 22 chr4 10115410 10115593 -174173069 - MIR SINE MIR -73 189 2 211 327 84 0 chr4 10116303 10116410 -174172252 + MIR SINE MIR 2 117 -145 223 254 0 17 chr4 10116678 10116737 -174171925 + MIR SINE MIR 95 152 -56 198 0 0 0 chr4 10116812 10116834 -174171828 + (TGAA)n Simple_repeat Simple_repeat 3 24 0 205 378 64 13 chr4 10117017 10117173 -174171489 + L3 LINE CR1 1407 1570 -7 220 246 87 43 chr4 10117383 10117521 -174171141 - L2 LINE L2 -208 3064 2921 743 263 91 45 chr4 10118528 10118924 -174169738 - MLT1C LTR MaLR 0 467 54 417 290 36 67 chr4 10119395 10119431 -174169231 - MIR SINE MIR -18 244 208 2120 114 0 31 chr4 10119431 10119748 -174168914 - AluSx SINE Alu -5 307 1 417 290 36 67 chr4 10119748 10119905 -174168757 - MIR SINE MIR -54 208 45 351 203 0 0 chr4 10121040 10121109 -174167553 - MLT1D LTR MaLR 0 505 437 530 232 0 0 chr4 10121109 10121221 -174167441 + MER47A DNA MER2_type 1 112 -254 532 216 16 0 chr4 10121222 10121347 -174167315 + MER47A DNA MER2_type 240 366 0 1583 202 80 36 chr4 10121352 10121767 -174166895 - MLT1D LTR MaLR -72 433 1 182 331 83 53 chr4 10122075 10122244 -174166418 - MIR SINE MIR -44 218 45 211 336 60 0 chr4 10122273 10122389 -174166273 - L2 LINE L2 -9 3263 3141 190 332 72 9 chr4 10122426 10122649 -174166013 - L2 LINE L2 -340 2974 2738 187 267 287 0 chr4 10123054 10123155 -174165507 + MER5A DNA MER1_type 36 165 -24 * 334 220 66 0 chr4 10123089 10123180 -174165482 - MER5A DNA MER1_type -83 106 10 222 362 51 22 chr4 10123251 10123389 -174165273 - MIR3 SINE MIR -62 146 5 196 231 0 0 chr4 10123497 10123536 -174165126 - L2 LINE L2 -12 3301 3263 316 309 158 29 chr4 10124230 10124432 -174164230 + MIR SINE MIR 3 219 -43 189 299 41 62 chr4 10124904 10125001 -174163661 - MIR3 SINE MIR -26 182 88 250 286 134 9 chr4 10125536 10125648 -174163014 + MER96 DNA MER1_type? 11 136 -39 216 192 19 39 chr4 10125898 10125950 -174162712 + L2 LINE L2 3208 3258 -14 282 301 109 65 chr4 10126046 10126448 -174162214 - L2 LINE L2 -43 3229 2810 200 360 27 36 chr4 10127121 10127232 -174161430 - MIR SINE MIR -118 144 35 310 331 128 12 chr4 10128260 10128432 -174160230 + MIR SINE MIR 25 216 -46 196 275 12 62 chr4 10128556 10128636 -174160026 - MIR3 SINE MIR -6 202 127 377 258 129 12 chr4 10128817 10128980 -174159682 - L2 LINE L2 -257 3056 2875 931 71 20 45 chr4 10129490 10129813 -174158849 + (TGGA)n Simple_repeat Simple_repeat 1 315 0 297 51 0 0 chr4 10129825 10129864 -174158798 + (TGGA)n Simple_repeat Simple_repeat 1 39 0 224 297 203 7 chr4 10129908 10130046 -174158616 - MIR3 SINE MIR -41 167 3 22 56 0 0 chr4 10130111 10130147 -174158515 + AT_rich Low_complexity Low_complexity 1 36 0 1410 189 79 16 chr4 10130814 10131180 -174157482 - MLT1C LTR MaLR -76 391 3 214 316 13 13 chr4 10131364 10131443 -174157219 - MIR SINE MIR -117 145 67 332 298 0 10 chr4 10131540 10131644 -174157018 - MIR SINE MIR -61 147 45 283 241 60 0 chr4 10131740 10131823 -174156839 + MER81 DNA DNA 27 114 0 372 298 128 30 chr4 10132656 10132891 -174155771 + L2 LINE L2 2906 3163 -109 2261 206 27 2 chr4 10133109 10133547 -174155115 - L1MB5 LINE L1 -8 6166 5718 190 227 68 0 chr4 10133572 10133616 -174155046 - L2 LINE L2 -23 3290 3244 238 264 35 0 chr4 10133717 10133804 -174154858 + MER45 DNA AcHobo 26 115 -1466 309 357 8 16 chr4 10134701 10134830 -174153832 + MIR SINE MIR 17 144 -118 316 248 204 0 chr4 10134984 10135097 -174153565 + MIR SINE MIR 8 143 -119 180 359 39 10 chr4 10136778 10136881 -174151781 - MIR3 SINE MIR -6 202 97 194 283 19 0 chr4 10136999 10137052 -174151610 + MIR SINE MIR 90 143 -65 3325 222 34 4 chr4 10137347 10138181 -174150481 - L1 LINE L1 -2876 3270 2412 307 320 0 49 chr4 10138310 10138432 -174150230 + L2 LINE L2 3156 3271 -1 26 30 0 0 chr4 10138451 10138484 -174150178 + AT_rich Low_complexity Low_complexity 1 33 0 568 304 68 27 chr4 10138823 10139043 -174149619 - MIR SINE MIR -21 241 13 429 296 39 82 chr4 10139743 10139949 -174148713 - MIR SINE MIR 0 262 66 2148 106 0 3 chr4 10139962 10140265 -174148397 - AluSq SINE Alu -11 302 1 204 178 0 44 chr4 10143042 10143087 -174145575 + CT-rich Low_complexity Low_complexity 3 45 0 623 225 21 0 chr4 10143088 10143368 -174145294 + (TCCA)n Simple_repeat Simple_repeat 1 285 0 208 231 26 0 chr4 10143387 10143465 -174145197 + (TCCA)n Simple_repeat Simple_repeat 1 80 0 305 279 81 62 chr4 10143578 10143739 -174144923 + L2 LINE L2 3109 3272 0 257 303 107 0 chr4 10143745 10143867 -174144795 - MIR3 SINE MIR -45 163 29 201 240 42 5 chr4 10144349 10144421 -174144241 - MIR SINE MIR -68 140 91 230 273 0 0 chr4 10144918 10144973 -174143689 + L2 LINE L2 3208 3262 -10 195 296 61 10 chr4 10145892 10145990 -174142672 + MIR SINE MIR 34 136 -72 186 43 0 0 chr4 10146110 10146133 -174142529 + (GA)n Simple_repeat Simple_repeat 1 23 0 614 281 107 12 chr4 10146789 10147042 -174141620 - MLT1J2 LTR MaLR 0 450 174 515 258 122 36 chr4 10147359 10147688 -174140974 + L2 LINE L2 2828 3184 -129 1231 193 44 139 chr4 10147699 10148108 -174140554 - MLT1A2 LTR MaLR -4 370 1 335 279 135 0 chr4 10148125 10148229 -174140433 + L2 LINE L2 3195 3312 -1 372 278 98 40 chr4 10149659 10149832 -174138830 - MIR SINE MIR -12 250 68 301 257 119 9 chr4 10150109 10150218 -174138444 - L1M4 LINE L1 -3353 2793 2673 1509 204 40 3 chr4 10150241 10150433 -174138229 - AluJo SINE Alu -2 310 102 1994 134 23 7 chr4 10150433 10150740 -174137922 + AluSx SINE Alu 1 312 0 1509 204 40 3 chr4 10150740 10150846 -174137816 - AluJo SINE Alu -210 102 1 465 343 14 28 chr4 10151549 10151765 -174136897 - MIR SINE MIR 0 262 50 2017 105 0 20 chr4 10151981 10152275 -174136387 - AluJb SINE Alu -2 310 23 610 208 17 11 chr4 10154108 10154286 -174134376 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 300 290 0 0 chr4 10154286 10154410 -174134252 + (CCA)n Simple_repeat Simple_repeat 1 124 0 * 732 171 6 23 chr4 10154384 10154560 -174134102 + (CACCAT)n Simple_repeat Simple_repeat 4 176 0 278 202 0 45 chr4 10154695 10154784 -174133878 + (CACCAT)n Simple_repeat Simple_repeat 2 86 0 655 116 0 101 chr4 10154795 10154994 -174133668 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 655 116 0 101 chr4 10155008 10155207 -174133455 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 340 97 32 0 chr4 10155219 10155281 -174133381 + (CACCAT)n Simple_repeat Simple_repeat 5 68 0 688 176 23 6 chr4 10155292 10155468 -174133194 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 208 107 0 0 chr4 10155468 10155496 -174133166 + (CAT)n Simple_repeat Simple_repeat 1 28 0 318 317 137 22 chr4 10156005 10156188 -174132474 - MIR SINE MIR -6 256 53 608 310 70 0 chr4 10156232 10156445 -174132217 + MIR SINE MIR 35 262 0 220 98 0 59 chr4 10157535 10157586 -174131076 + (TTCC)n Simple_repeat Simple_repeat 4 51 0 249 318 163 20 chr4 10157821 10158220 -174130442 + L2 LINE L2 2817 3272 0 599 365 73 0 chr4 10158280 10158636 -174130026 + L3 LINE CR1 767 1148 -429 581 324 14 19 chr4 10158649 10158862 -174129800 + MIR SINE MIR 8 219 -43 2018 137 67 50 chr4 10160077 10160365 -174128297 + THE1B LTR MaLR 1 298 -66 1954 142 0 13 chr4 10160365 10160675 -174127987 + AluSx SINE Alu 6 311 -1 2018 137 67 50 chr4 10160675 10160744 -174127918 + THE1B LTR MaLR 298 364 0 251 175 140 0 chr4 10160804 10160861 -174127801 - MIR SINE MIR -117 145 81 427 176 0 0 chr4 10161285 10161359 -174127303 + MIR SINE MIR 79 152 -110 2908 235 46 51 chr4 10163613 10163652 -174125010 - L1ME1 LINE L1 -3 6163 6125 2031 101 0 29 chr4 10163652 10163968 -174124694 - AluSq SINE Alu -6 307 1 2908 235 46 51 chr4 10163968 10164827 -174123835 - L1ME1 LINE L1 -41 6125 5263 189 0 0 0 chr4 10164827 10164848 -174123814 + (TA)n Simple_repeat Simple_repeat 1 21 0 2218 103 3 13 chr4 10164848 10165160 -174123502 - AluSx SINE Alu -3 309 1 2908 235 46 51 chr4 10165160 10165477 -174123185 - L1ME1 LINE L1 -902 5264 4940 734 32 0 11 chr4 10165477 10165571 -174123091 + (TTTC)n Simple_repeat Simple_repeat 3 95 0 2908 235 46 51 chr4 10165571 10165617 -174123045 - L1ME1 LINE L1 -1226 4940 4895 348 183 175 8 chr4 10167271 10167391 -174121271 + MIR SINE MIR 92 231 -31 340 272 60 54 chr4 10167587 10167671 -174120991 - L1ME4a LINE L1 -1 6120 6038 2204 114 0 0 chr4 10167671 10167978 -174120684 + AluSx SINE Alu 1 307 -5 340 272 60 54 chr4 10167978 10168077 -174120585 - L1ME4a LINE L1 -83 6038 5936 314 319 143 38 chr4 10168467 10168677 -174119985 - L1ME4a LINE L1 -203 5918 5687 2316 116 40 27 chr4 10169694 10170064 -174118598 - THE1C LTR MaLR 0 375 1 235 289 144 0 chr4 10170965 10171055 -174117607 - MIR SINE MIR -80 182 80 286 207 117 27 chr4 10172096 10172207 -174116455 - MER113 DNA MER1_type? -302 219 99 2178 86 7 3 chr4 10172208 10172499 -174116163 + AluSg SINE Alu 6 297 -13 908 207 43 22 chr4 10174255 10174487 -174114175 - ORSL DNA AcHobo -20 255 19 189 392 63 7 chr4 10175624 10175767 -174112895 + MIR SINE MIR 87 237 -25 563 240 7 0 chr4 10177503 10178103 -174110559 + (CA)n Simple_repeat Simple_repeat 1 604 0 518 240 6 0 chr4 10178117 10178288 -174110374 + (CA)n Simple_repeat Simple_repeat 1 172 0 417 261 0 0 chr4 10178302 10178444 -174110218 + (CA)n Simple_repeat Simple_repeat 1 142 0 581 235 6 0 chr4 10178460 10178639 -174110023 + (CA)n Simple_repeat Simple_repeat 1 180 0 629 232 0 6 chr4 10178655 10178979 -174109683 + (CA)n Simple_repeat Simple_repeat 1 321 0 228 262 0 0 chr4 10179503 10179564 -174109098 - L1MB3 LINE L1 -1 6182 6122 235 294 73 0 chr4 10180403 10180512 -174108150 - L2 LINE L2 0 3272 3156 198 195 0 0 chr4 10181937 10181978 -174106684 - MIR SINE MIR -113 149 109 261 326 47 0 chr4 10182582 10182668 -174105994 + MIR3 SINE MIR 97 186 -22 489 244 7 37 chr4 10182849 10182984 -174105678 - MER45A DNA AcHobo -2 176 46 254 289 64 87 chr4 10183654 10183827 -174104835 + MIR SINE MIR 46 214 -48 591 308 7 0 chr4 10184360 10184506 -174104156 + MIR SINE MIR 8 154 -108 417 328 88 46 chr4 10185147 10185452 -174103210 - L2 LINE L2 -25 3247 2930 187 233 167 0 chr4 10185741 10185801 -174102861 + MIR3 SINE MIR 125 194 -14 207 0 0 0 chr4 10186557 10186580 -174102082 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 287 295 48 9 chr4 10189234 10189339 -174099323 + MIR SINE MIR 117 225 -37 321 291 87 44 chr4 10189457 10189663 -174098999 - L1MB7 LINE L1 -163 6021 5807 308 254 42 99 chr4 10189942 10190084 -174098578 - L1MB7 LINE L1 -669 5452 5319 486 260 95 30 chr4 10190821 10190990 -174097672 - MER5A DNA MER1_type -6 183 4 391 306 30 63 chr4 10191027 10191329 -174097333 + L2 LINE L2 2776 3068 -245 252 0 0 0 chr4 10191395 10191423 -174097239 + (CCA)n Simple_repeat Simple_repeat 3 30 0 1086 159 0 3 chr4 10191539 10192332 -174096330 + (TGGA)n Simple_repeat Simple_repeat 1 790 0 402 316 71 9 chr4 10193658 10193870 -174094792 - L1ME LINE L1 -647 5517 5293 13217 190 47 21 chr4 10194692 10194910 -174093752 - L1PB4 LINE L1 -4 6344 6133 333 0 0 0 chr4 10194910 10194947 -174093715 + (TA)n Simple_repeat Simple_repeat 1 37 0 13217 190 47 21 chr4 10194947 10200178 -174088484 - L1PB4 LINE L1 -215 6133 772 4108 166 14 4 chr4 10200188 10200891 -174087771 - L1PB4 LINE L1 -4618 710 1 226 208 104 94 chr4 10201431 10201537 -174087125 + MIR SINE MIR 105 211 -51 2340 92 0 0 chr4 10201931 10202235 -174086427 - AluSc SINE Alu -5 304 1 369 320 4 17 chr4 10202328 10202525 -174086137 + CT-rich Low_complexity Low_complexity 1 194 0 246 171 26 13 chr4 10202532 10202608 -174086054 + (TCCA)n Simple_repeat Simple_repeat 1 77 0 1907 127 20 7 chr4 10204423 10204715 -174083947 - AluSx SINE Alu -10 302 7 276 344 33 49 chr4 10204735 10204918 -174083744 - L1ME LINE L1 -302 5819 5640 198 300 0 85 chr4 10205347 10205477 -174083185 - L2 LINE L2 -210 3062 2944 1960 202 35 86 chr4 10205498 10206146 -174082516 - LTR6A LTR ERV1 0 564 1 1674 229 52 52 chr4 10206216 10206714 -174081948 - MLT1D LTR MaLR -7 498 1 342 344 119 20 chr4 10206959 10207315 -174081347 - L2 LINE L2 -227 3045 2653 462 299 0 12 chr4 10207592 10208034 -174080628 + (CA)n Simple_repeat Simple_repeat 1 436 0 274 274 60 60 chr4 10208586 10208703 -174079959 + MIR3 SINE MIR 58 174 -34 378 339 17 0 chr4 10209223 10209338 -174079324 - L2 LINE L2 -20 3252 3136 1351 251 70 57 chr4 10209761 10210286 -174078376 - MLT1H LTR MaLR 0 549 18 643 255 57 48 chr4 10210929 10211325 -174077337 - MLT1J2 LTR MaLR -7 443 8 352 251 155 15 chr4 10211330 10211511 -174077151 + MIR SINE MIR 6 210 -52 482 266 122 18 chr4 10212436 10212658 -174076004 + MIR SINE MIR 14 258 -4 192 257 27 81 chr4 10213071 10213145 -174075517 + MIR3 SINE MIR 88 157 -51 235 293 192 5 chr4 10213489 10213687 -174074975 + MER115 DNA AcHobo 215 449 -244 279 286 169 0 chr4 10213829 10214007 -174074655 + L2 LINE L2 2562 2769 -545 270 318 28 9 chr4 10214414 10214521 -174074141 + L2 LINE L2 3154 3262 -51 848 205 19 6 chr4 10214553 10214714 -174073948 - FRAM SINE Alu -16 160 1 734 210 0 80 chr4 10214906 10215082 -174073580 + MER63 DNA MER1_type 1 788 -48 238 267 27 43 chr4 10215328 10215439 -174073223 + MIR SINE MIR 63 171 -37 204 318 15 0 chr4 10215642 10215708 -174072954 - MIR SINE MIR -77 131 65 231 188 21 0 chr4 10217057 10217105 -174071557 - MIR3 SINE MIR -48 160 112 615 202 0 0 chr4 10217603 10217702 -174070960 + FLAM_C SINE Alu 12 110 -33 319 335 52 21 chr4 10217760 10217954 -174070708 - MIR SINE MIR -3 259 60 1115 189 173 58 chr4 10218707 10219089 -174069573 - MSTB LTR MaLR 0 426 1 213 258 227 19 chr4 10219803 10220059 -174068603 - L2 LINE L2 -374 2940 2632 187 259 19 0 chr4 10220193 10220247 -174068415 - MIR SINE MIR -119 143 89 462 276 39 19 chr4 10220975 10221131 -174067531 + MIR SINE MIR 70 228 -34 243 0 0 0 chr4 10221538 10221565 -174067097 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 349 218 31 0 chr4 10223588 10223684 -174064978 - MIR SINE MIR -62 146 88 328 331 159 7 chr4 10224322 10224467 -174064195 + MIR SINE MIR 4 170 -92 610 281 24 117 chr4 10227784 10228204 -174060458 - L1ME3A LINE L1 -283 5887 5507 1855 236 156 67 chr4 10228222 10228929 -174059733 - MER21B LTR ERV1 -81 782 13 1200 267 111 102 chr4 10229117 10230673 -174057989 - L1MC4a LINE L1 -124 7918 6342 685 300 105 25 chr4 10230751 10231114 -174057548 - L1ME3A LINE L1 -139 6031 5640 394 117 0 164 chr4 10232971 10233185 -174055477 + (CCCCCA)n Simple_repeat Simple_repeat 2 180 0 225 104 0 130 chr4 10233235 10233312 -174055350 + (CCCCCA)n Simple_repeat Simple_repeat 3 69 0 204 308 25 17 chr4 10233811 10233931 -174054731 + CT-rich Low_complexity Low_complexity 3 123 0 214 235 12 74 chr4 10235133 10235214 -174053448 - MIR SINE MIR -15 247 172 257 227 0 45 chr4 10235449 10235515 -174053147 + MIR SINE MIR 83 145 -63 182 335 152 11 chr4 10236017 10236208 -174052454 - L2 LINE L2 -28 3244 3027 1765 201 105 20 chr4 10237301 10237630 -174051032 - L1MB5 LINE L1 0 6174 5797 1653 138 76 11 chr4 10237630 10237905 -174050757 - AluJb SINE Alu -19 293 1 1765 201 105 20 chr4 10237905 10238014 -174050648 - L1MB5 LINE L1 -377 5797 5699 532 208 88 0 chr4 10238015 10238140 -174050522 + MIR SINE MIR 102 237 -25 735 241 70 9 chr4 10238368 10238549 -174050113 - L1MB5 LINE L1 -1010 5136 4937 600 14 0 0 chr4 10238549 10238618 -174050044 + (TTTC)n Simple_repeat Simple_repeat 3 71 0 735 241 70 9 chr4 10238618 10238664 -174049998 - L1MB5 LINE L1 -1209 4937 4895 348 183 175 8 chr4 10240312 10240432 -174048230 + MIR SINE MIR 92 231 -31 339 275 73 28 chr4 10240627 10240708 -174047954 - L1ME4a LINE L1 -1 6120 6044 2398 108 0 0 chr4 10240708 10241015 -174047647 + AluSx SINE Alu 1 307 -5 339 275 73 28 chr4 10241015 10241111 -174047551 - L1ME4a LINE L1 -77 6044 5935 2183 111 43 25 chr4 10242730 10243098 -174045564 - THE1C LTR MaLR 0 375 1 226 318 122 0 chr4 10243990 10244097 -174044565 - MIR SINE MIR -80 182 63 318 209 118 18 chr4 10245107 10245217 -174043445 - MER113 DNA MER1_type? -302 219 99 2388 82 7 0 chr4 10245218 10245511 -174043151 + AluSg SINE Alu 6 300 -10 946 203 45 21 chr4 10247257 10247499 -174041163 - ORSL DNA AcHobo -20 255 8 210 364 79 0 chr4 10248622 10248762 -174039900 + MIR SINE MIR 87 237 -25 602 232 3 3 chr4 10250484 10250800 -174037862 + (CA)n Simple_repeat Simple_repeat 1 316 0 503 239 6 0 chr4 10250814 10250981 -174037681 + (CA)n Simple_repeat Simple_repeat 1 168 0 545 247 0 4 chr4 10250995 10251272 -174037390 + (CA)n Simple_repeat Simple_repeat 1 275 0 378 271 0 0 chr4 10251286 10251426 -174037236 + (CA)n Simple_repeat Simple_repeat 1 140 0 560 240 6 0 chr4 10251442 10251621 -174037041 + (CA)n Simple_repeat Simple_repeat 1 180 0 629 234 0 6 chr4 10251635 10251957 -174036705 + (CA)n Simple_repeat Simple_repeat 1 319 0 218 311 66 0 chr4 10253380 10253502 -174035160 - L2 LINE L2 0 3272 3143 194 195 0 0 chr4 10254905 10254946 -174033716 - MIR SINE MIR -113 149 109 257 326 47 0 chr4 10255549 10255635 -174033027 + MIR3 SINE MIR 97 186 -22 561 250 8 15 chr4 10255816 10255948 -174032714 - MER45A DNA AcHobo -2 176 46 234 279 68 87 chr4 10256616 10256777 -174031885 + MIR SINE MIR 46 203 -59 572 315 7 0 chr4 10257314 10257460 -174031202 + MIR SINE MIR 8 154 -108 371 328 88 46 chr4 10258101 10258406 -174030256 - L2 LINE L2 -25 3247 2930 186 304 54 0 chr4 10258691 10258747 -174029915 + L3 LINE CR1 1498 1556 -21 207 0 0 0 chr4 10259510 10259533 -174029129 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 305 265 69 0 chr4 10262164 10262266 -174026396 + MIR SINE MIR 117 225 -37 308 283 93 44 chr4 10262384 10262589 -174026073 - L1MB7 LINE L1 -163 6021 5807 322 290 138 88 chr4 10262708 10263005 -174025657 - L1MB7 LINE L1 -491 5630 5319 510 272 92 17 chr4 10263722 10263895 -174024767 - MER5A DNA MER1_type 0 189 4 381 311 31 55 chr4 10263932 10264224 -174024438 + L2 LINE L2 2776 3060 -253 252 0 0 0 chr4 10264298 10264326 -174024336 + (CCA)n Simple_repeat Simple_repeat 3 30 0 1086 160 0 0 chr4 10264440 10265231 -174023431 + (TGGA)n Simple_repeat Simple_repeat 1 791 0 367 321 71 9 chr4 10266548 10266760 -174021902 - L1ME LINE L1 -645 5517 5293 13530 193 48 16 chr4 10267582 10267800 -174020862 - L1PB4 LINE L1 -4 6344 6134 207 0 0 0 chr4 10267800 10267823 -174020839 + (TA)n Simple_repeat Simple_repeat 2 24 0 13530 193 48 16 chr4 10267823 10273024 -174015638 - L1PB4 LINE L1 -214 6134 772 4159 167 14 0 chr4 10273034 10273734 -174014928 - L1PB4 LINE L1 -4618 710 1 219 208 104 94 chr4 10274274 10274380 -174014282 + MIR SINE MIR 105 211 -51 2486 92 0 0 chr4 10274772 10275077 -174013585 - AluSc SINE Alu -4 305 1 369 320 4 17 chr4 10275170 10275367 -174013295 + CT-rich Low_complexity Low_complexity 1 194 0 246 171 26 13 chr4 10275374 10275450 -174013212 + (TCCA)n Simple_repeat Simple_repeat 1 77 0 2143 128 20 0 chr4 10277215 10277512 -174011150 - AluSx SINE Alu -9 303 1 276 343 39 44 chr4 10277524 10277705 -174010957 - L1ME LINE L1 -302 5819 5640 1954 202 35 86 chr4 10278277 10278925 -174009737 - LTR6A LTR ERV1 0 564 1 1712 231 53 45 chr4 10278995 10279489 -174009173 - MLT1D LTR MaLR -7 498 1 334 337 129 9 chr4 10279733 10280000 -174008662 - L2 LINE L2 -227 3045 2748 351 289 0 12 chr4 10280293 10280794 -174007868 + (CA)n Simple_repeat Simple_repeat 1 494 0 294 240 53 93 chr4 10281302 10281452 -174007210 + MIR3 SINE MIR 31 174 -34 371 339 17 0 chr4 10281970 10282085 -174006577 - L2 LINE L2 -20 3252 3136 1585 235 80 39 chr4 10282496 10283007 -174005655 - MLT1H LTR MaLR 0 549 18 637 252 43 5 chr4 10283647 10284033 -174004629 - MLT1J2 LTR MaLR -7 443 15 379 249 163 11 chr4 10284045 10284227 -174004435 + MIR SINE MIR 6 214 -48 545 272 121 13 chr4 10285146 10285370 -174003292 + MIR SINE MIR 14 261 -1 203 257 27 81 chr4 10285778 10285852 -174002810 + MIR3 SINE MIR 88 157 -51 322 286 169 0 chr4 10286533 10286711 -174001951 + L2 LINE L2 2562 2769 -545 288 318 28 9 chr4 10287111 10287218 -174001444 + L2 LINE L2 3154 3262 -51 810 219 12 0 chr4 10287250 10287410 -174001252 - FRAM SINE Alu -17 159 1 679 210 0 80 chr4 10287601 10287777 -174000885 + MER63 DNA MER1_type 1 788 -48 301 262 28 21 chr4 10288021 10288130 -174000532 + MIR SINE MIR 63 171 -37 213 318 15 0 chr4 10288333 10288399 -174000263 - MIR SINE MIR -77 131 65 234 188 21 0 chr4 10289743 10289791 -173998871 - MIR3 SINE MIR -48 160 112 630 192 0 0 chr4 10290281 10290380 -173998282 + FLAM_C SINE Alu 12 110 -33 357 366 36 5 chr4 10290438 10290632 -173998030 - MIR SINE MIR -3 259 60 1193 195 174 50 chr4 10291385 10291764 -173996898 - MSTB LTR MaLR 0 426 1 260 274 189 37 chr4 10292167 10292729 -173995933 - L2 LINE L2 -1 3271 2632 191 259 19 0 chr4 10292862 10292916 -173995746 - MIR SINE MIR -119 143 89 506 269 39 19 chr4 10293635 10293791 -173994871 + MIR SINE MIR 70 228 -34 243 0 0 0 chr4 10294192 10294219 -173994443 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 204 309 24 24 chr4 10294801 10294885 -173993777 - L2 LINE L2 -13 3259 3176 357 233 29 0 chr4 10296223 10296326 -173992336 - MIR SINE MIR -62 146 88 341 338 159 7 chr4 10296962 10297107 -173991555 + MIR SINE MIR 4 170 -92 603 279 29 113 chr4 10300415 10300831 -173987831 - L1ME3A LINE L1 -283 5887 5507 1713 236 158 61 chr4 10300849 10301551 -173987111 - MER21B LTR ERV1 -81 782 13 1132 264 138 114 chr4 10301739 10302989 -173985673 - L1MC4 LINE L1 -124 7918 6623 180 0 0 0 chr4 10302989 10303009 -173985653 + (GGAA)n Simple_repeat Simple_repeat 4 23 0 1132 264 138 114 chr4 10303009 10303287 -173985375 - L1MC4 LINE L1 -1419 6623 6353 615 306 96 16 chr4 10303367 10303730 -173984932 - L1ME3A LINE L1 -139 6031 5640 205 176 0 155 chr4 10305444 10305637 -173983025 + C-rich Low_complexity Low_complexity 3 165 0 210 138 0 125 chr4 10305857 10305937 -173982725 + (CCCCCA)n Simple_repeat Simple_repeat 3 72 0 384 98 0 152 chr4 10305976 10306140 -173982522 + (CCCCCA)n Simple_repeat Simple_repeat 3 141 0 1269 249 64 23 chr4 10306367 10306804 -173981858 - MLT1C LTR MaLR -6 461 7 1023 264 162 26 chr4 10307732 10308516 -173980146 - L2 LINE L2 -8 3305 2421 260 258 16 32 chr4 10309567 10309691 -173978971 + CT-rich Low_complexity Low_complexity 3 124 0 204 40 0 0 chr4 10309761 10309786 -173978876 + (GGGGA)n Simple_repeat Simple_repeat 2 26 0 320 130 19 0 chr4 10309976 10310030 -173978632 - MLT1C LTR MaLR -409 58 4 390 173 13 0 chr4 10310698 10310773 -173977889 - MLT1C LTR MaLR -69 398 323 213 265 0 0 chr4 10311013 10311062 -173977600 - MIR SINE MIR -111 151 103 345 189 18 18 chr4 10311986 10312097 -173976565 + CT-rich Low_complexity Low_complexity 3 113 0 873 175 11 23 chr4 10312110 10312565 -173976097 + CT-rich Low_complexity Low_complexity 1 449 0 345 310 40 38 chr4 10312573 10312736 -173975926 + MIR SINE MIR 5 180 -62 861 175 2 0 chr4 10313871 10314330 -173974332 + (TGAG)n Simple_repeat Simple_repeat 1 460 0 267 234 0 0 chr4 10314344 10314421 -173974241 + (TGAG)n Simple_repeat Simple_repeat 3 79 0 195 42 0 0 chr4 10314449 10314473 -173974189 + (CAG)n Simple_repeat Simple_repeat 1 24 0 183 299 98 43 chr4 10314842 10315006 -173973656 - L2 LINE L2 -520 2794 2622 2142 123 0 3 chr4 10315314 10315615 -173973047 - AluSx SINE Alu -12 300 1 349 318 73 7 chr4 10315780 10315931 -173972731 + MIR SINE MIR 32 192 -70 264 291 0 44 chr4 10316053 10316235 -173972427 + (TTGGGG)n Simple_repeat Simple_repeat 2 175 0 303 293 0 37 chr4 10316337 10316667 -173971995 + (TTGGGG)n Simple_repeat Simple_repeat 1 317 0 222 263 0 65 chr4 10316877 10317063 -173971599 + (TTGGGG)n Simple_repeat Simple_repeat 2 175 0 219 296 12 19 chr4 10317013 10317175 -173971487 + (GGGTG)n Simple_repeat Simple_repeat 2 162 0 * 208 274 0 65 chr4 10317107 10317293 -173971369 + (TTGGGG)n Simple_repeat Simple_repeat 2 175 0 * 260 278 11 33 chr4 10317245 10317425 -173971237 + (GGGTG)n Simple_repeat Simple_repeat 2 177 0 * 313 255 0 54 chr4 10317319 10317503 -173971159 + (TTGGGG)n Simple_repeat Simple_repeat 2 175 0 235 311 0 33 chr4 10317417 10317597 -173971065 + (TTAGGG)n Simple_repeat Simple_repeat 2 175 0 * 279 296 3 35 chr4 10317809 10318156 -173970506 + (TTGGGG)n Simple_repeat Simple_repeat 1 335 0 318 308 0 27 chr4 10318350 10318691 -173969971 + (TTGGGG)n Simple_repeat Simple_repeat 1 331 0 284 290 0 32 chr4 10318719 10318874 -173969788 + (TTGGGG)n Simple_repeat Simple_repeat 2 151 0 212 374 0 0 chr4 10318813 10318987 -173969675 + (TTAGGG)n Simple_repeat Simple_repeat 2 175 0 * 2116 171 45 3 chr4 10319080 10319454 -173969208 - MLT1B LTR MaLR 0 390 1 252 0 0 0 chr4 10319477 10319505 -173969157 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 190 333 111 47 chr4 10319981 10320152 -173968510 + MIR SINE MIR 8 189 -73 210 278 93 62 chr4 10320198 10320295 -173968367 + L2 LINE L2 3212 3311 -2 418 332 124 13 chr4 10321732 10322039 -173966623 - L2 LINE L2 0 3272 2932 259 312 35 30 chr4 10322230 10322371 -173966291 + MIR SINE MIR 14 149 -59 319 267 30 20 chr4 10322516 10322617 -173966045 + MIR SINE MIR 98 199 -63 339 331 48 0 chr4 10325349 10325473 -173963189 + MIR SINE MIR 29 158 -104 239 316 25 0 chr4 10325748 10325827 -173962835 + L2 LINE L2 3173 3253 -19 273 269 234 28 chr4 10326149 10326294 -173962368 - MIR SINE MIR -80 182 8 180 262 90 107 chr4 10326394 10326516 -173962146 + MIR SINE MIR 28 147 -115 357 329 79 73 chr4 10327141 10327730 -173960932 - L2 LINE L2 0 3272 2649 223 261 77 0 chr4 10328127 10328192 -173960470 + MIR SINE MIR 123 192 -70 408 286 64 14 chr4 10328965 10329105 -173959557 - MIR SINE MIR -83 179 33 508 233 78 49 chr4 10329241 10329572 -173959090 - MLT1J2 LTR MaLR -23 427 46 197 357 47 0 chr4 10329668 10329797 -173958865 - L2 LINE L2 -620 2694 2560 197 336 219 0 chr4 10330775 10330903 -173957759 + MIR3 SINE MIR 45 200 -8 245 389 108 32 chr4 10331070 10331412 -173957250 - L3 LINE CR1 -253 1324 957 735 269 45 14 chr4 10331970 10332193 -173956469 + MIR SINE MIR 32 261 -1 738 202 0 0 chr4 10332205 10332383 -173956279 + (TGG)n Simple_repeat Simple_repeat 2 179 0 240 67 0 0 chr4 10332383 10332413 -173956249 + (ATG)n Simple_repeat Simple_repeat 1 30 0 763 244 36 0 chr4 10332720 10332888 -173955774 - MER5B DNA MER1_type -4 174 1 225 247 14 41 chr4 10333186 10333259 -173955403 - MIR SINE MIR -65 143 73 609 213 0 3 chr4 10333261 10333515 -173955147 + (TCCA)n Simple_repeat Simple_repeat 1 253 0 208 333 48 0 chr4 10333935 10333998 -173954664 + L2 LINE L2 3233 3298 -15 328 306 60 16 chr4 10334021 10334204 -173954458 - L2 LINE L2 -190 3123 2933 190 320 117 52 chr4 10335303 10335534 -173953128 - L2 LINE L2 -121 3151 2906 203 293 0 0 chr4 10336571 10336629 -173952033 - L2 LINE L2 -335 2978 2921 274 301 32 49 chr4 10336969 10337092 -173951570 + L2 LINE L2 2634 2754 -560 279 269 23 46 chr4 10337152 10337282 -173951380 + L2 LINE L2 3133 3259 -13 261 119 0 0 chr4 10337282 10337324 -173951338 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 1286 238 121 12 chr4 10337838 10338259 -173950403 - MLT1C LTR MaLR 0 467 1 188 135 27 0 chr4 10338806 10338843 -173949819 + (CA)n Simple_repeat Simple_repeat 1 38 0 948 206 127 57 chr4 10339352 10339668 -173948994 - MLT2C1 LTR ERVL -47 350 13 185 333 61 27 chr4 10339823 10339970 -173948692 + L2 LINE L2 3045 3196 -117 207 177 122 68 chr4 10340415 10340562 -173948100 + (GCTG)n Simple_repeat Simple_repeat 3 157 0 410 352 116 0 chr4 10341401 10341719 -173946943 + L2 LINE L2 2957 3311 -2 270 326 12 0 chr4 10341740 10341826 -173946836 + L2 LINE L2 3184 3270 -2 1076 255 28 31 chr4 10342097 10342646 -173946016 - MER77 LTR ERV1 -7 598 1 283 265 39 29 chr4 10342948 10343050 -173945612 - L2 LINE L2 -20 3252 3150 206 269 90 0 chr4 10343612 10343690 -173944972 + MER91A DNA MER1_type 21 105 -91 1189 230 90 35 chr4 10346060 10346224 -173942438 + MLT1C LTR MaLR 1 155 -312 2374 66 0 10 chr4 10346224 10346528 -173942134 + AluY SINE Alu 1 301 -10 1189 230 90 35 chr4 10346528 10346788 -173941874 + MLT1C LTR MaLR 155 458 -9 1444 54 0 16 chr4 10346930 10347116 -173941546 + L1PA8 LINE L1 5990 6172 0 674 257 138 20 chr4 10349807 10350238 -173938424 - MLT1D LTR MaLR 0 390 2 272 230 11 81 chr4 10352229 10352316 -173936346 - L2 LINE L2 0 3272 3192 189 296 0 0 chr4 10354165 10354209 -173934453 + MIR SINE MIR 219 262 0 245 327 82 62 chr4 10354330 10354779 -173933883 + L2 LINE L2 2811 3268 -4 237 261 0 31 chr4 10354846 10354911 -173933751 + MIR3 SINE MIR 96 158 -50 1644 194 84 19 chr4 10355461 10355889 -173932773 - L1MA8 LINE L1 -278 6013 5558 540 268 76 98 chr4 10356149 10356597 -173932065 - MLT1J2 LTR MaLR -10 440 3 273 356 70 0 chr4 10356737 10356852 -173931810 + MIR3 SINE MIR 47 169 -39 414 114 0 0 chr4 10357241 10357311 -173931351 + (CA)n Simple_repeat Simple_repeat 2 71 0 448 365 88 55 chr4 10357341 10357583 -173931079 - L1ME4a LINE L1 -158 5963 5704 1908 171 44 22 chr4 10357583 10357945 -173930717 - MLT1A2 LTR MaLR 0 374 5 448 365 88 55 chr4 10357945 10358064 -173930598 - L1ME4a LINE L1 -417 5704 5590 320 307 63 0 chr4 10358625 10358752 -173929910 + MIR SINE MIR 48 182 -80 274 264 110 11 chr4 10358856 10358947 -173929715 - MIR3 SINE MIR -3 205 106 257 343 97 27 chr4 10359457 10359634 -173929028 - MIR SINE MIR -33 175 3 265 271 0 0 chr4 10359669 10359739 -173928923 + C-rich Low_complexity Low_complexity 1 70 0 263 295 103 12 chr4 10360248 10360441 -173928221 - MIR3 SINE MIR -44 218 2 503 326 45 22 chr4 10360869 10361093 -173927569 - MIR SINE MIR -16 246 18 209 279 0 7 chr4 10362330 10362466 -173926196 + (TG)n Simple_repeat Simple_repeat 1 135 0 186 326 141 11 chr4 10363240 10363332 -173925330 - L2 LINE L2 -5 3267 3164 257 312 21 71 chr4 10365891 10366032 -173922630 - MIR3 SINE MIR -71 137 4 383 133 76 0 chr4 10366683 10366788 -173921874 + (CAGAGA)n Simple_repeat Simple_repeat 2 114 0 387 340 98 16 chr4 10367654 10367848 -173920814 - MIR SINE MIR -21 241 32 532 229 48 101 chr4 10367851 10368039 -173920623 + MER45A DNA AcHobo 1 178 0 237 325 95 16 chr4 10368788 10368914 -173919748 + MIR SINE MIR 108 243 -19 437 359 30 0 chr4 10368962 10369160 -173919502 + MIR SINE MIR 23 226 -36 186 277 229 0 chr4 10369160 10369243 -173919419 + MIR SINE MIR 82 183 -79 252 184 0 0 chr4 10369708 10369757 -173918905 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 305 313 80 28 chr4 10369824 10370000 -173918662 + MIR SINE MIR 69 253 -9 2136 107 3 7 chr4 10370416 10370725 -173917937 - AluSc SINE Alu -1 308 1 305 195 0 12 chr4 10371436 10371518 -173917144 + GA-rich Low_complexity Low_complexity 4 84 0 307 297 23 62 chr4 10371566 10371602 -173917060 + L1ME4a LINE L1 5998 6034 -87 1990 99 60 0 chr4 10371602 10371886 -173916776 - AluSx SINE Alu -9 303 3 307 297 23 62 chr4 10371886 10371977 -173916685 + L1ME4a LINE L1 6034 6120 -1 254 283 114 18 chr4 10372369 10372535 -173916127 - LTR33A LTR ERVL -73 450 269 204 297 193 36 chr4 10373971 10374163 -173914499 + L2 LINE L2 2926 3147 -166 249 83 0 0 chr4 10374586 10374622 -173914040 + (GA)n Simple_repeat Simple_repeat 2 37 0 243 61 0 0 chr4 10374653 10374692 -173913970 + (CA)n Simple_repeat Simple_repeat 1 72 0 243 61 0 0 chr4 10374692 10374725 -173913937 + (CA)n Simple_repeat Simple_repeat 2 34 0 219 36 0 107 chr4 10374744 10374800 -173913862 + (CAGAGA)n Simple_repeat Simple_repeat 3 52 0 498 122 31 0 chr4 10375599 10375697 -173912965 + GA-rich Low_complexity Low_complexity 2 102 0 416 236 49 24 chr4 10376315 10376438 -173912224 + MIR SINE MIR 20 145 -63 238 318 55 36 chr4 10377654 10377764 -173910898 - L2 LINE L2 -96 3217 3106 1286 223 72 19 chr4 10377926 10378303 -173910359 - MER77 LTR ERV1 -208 397 1 278 302 21 9 chr4 10378393 10378504 -173910158 - MIR SINE MIR -59 149 75 370 272 54 60 chr4 10379064 10379248 -173909414 + MIR3 SINE MIR 7 189 -19 183 100 0 0 chr4 10379323 10379353 -173909309 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 234 324 100 62 chr4 10379359 10379569 -173909093 - L2 LINE L2 -18 3254 3037 183 304 18 0 chr4 10382684 10382740 -173905922 + MIR SINE MIR 82 138 -70 288 263 102 34 chr4 10384233 10384351 -173904311 + MIR SINE MIR 21 146 -116 286 240 58 26 chr4 10384980 10385120 -173903542 + MIR3 SINE MIR 89 229 -33 252 267 73 63 chr4 10385260 10385451 -173903211 - MIR SINE MIR -43 219 27 385 220 41 23 chr4 10385849 10386147 -173902515 + CT-rich Low_complexity Low_complexity 1 303 0 228 280 0 0 chr4 10386149 10386199 -173902463 + C-rich Low_complexity Low_complexity 1 50 0 301 201 35 41 chr4 10386201 10386370 -173902292 + CT-rich Low_complexity Low_complexity 1 168 0 250 269 74 37 chr4 10386495 10386603 -173902059 - MIR3 SINE MIR -16 192 81 237 175 0 0 chr4 10386637 10386677 -173901985 - L2 LINE L2 -8 3264 3225 528 214 172 38 chr4 10387329 10387673 -173900989 + MLT1C LTR MaLR 7 488 -17 221 257 16 49 chr4 10389105 10389288 -173899374 + CT-rich Low_complexity Low_complexity 4 180 0 342 217 24 0 chr4 10389527 10389610 -173899052 - MER33 DNA MER1_type -6 357 273 1414 269 62 13 chr4 10389611 10390079 -173898583 + L1MC1 LINE L1 5836 6326 -7 793 163 49 20 chr4 10390085 10390288 -173898374 - MER33 DNA MER1_type -71 253 45 1768 197 90 24 chr4 10390466 10390934 -173897728 + MLT1D LTR MaLR 1 499 -6 324 64 0 0 chr4 10391269 10391316 -173897346 + (TC)n Simple_repeat Simple_repeat 1 47 0 1958 100 38 10 chr4 10391651 10391964 -173896698 - AluSx SINE Alu 0 312 1 1155 233 177 3 chr4 10392025 10392403 -173896259 - MLT1C LTR MaLR -17 450 7 274 278 48 88 chr4 10392409 10392682 -173895980 + L2 LINE L2 2963 3224 -89 272 309 43 50 chr4 10394344 10394483 -173894179 + MIR SINE MIR 33 170 -92 189 242 0 91 chr4 10394509 10394575 -173894087 + MIR SINE MIR 30 89 -119 182 206 175 0 chr4 10395583 10395646 -173893016 + MIR SINE MIR 108 181 -81 195 42 0 0 chr4 10396058 10396082 -173892580 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 330 226 105 15 chr4 10396302 10396435 -173892227 - MIR SINE MIR -70 192 48 193 250 0 21 chr4 10397042 10397090 -173891572 + MIR3 SINE MIR 108 154 -54 201 74 0 0 chr4 10397414 10397441 -173891221 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 1362 214 82 34 chr4 10397705 10398148 -173890514 + MLT1D LTR MaLR 22 467 0 500 314 47 0 chr4 10398662 10398853 -173889809 + MIR SINE MIR 28 227 -35 360 284 115 50 chr4 10399362 10399576 -173889086 + MIR SINE MIR 18 234 -28 209 279 48 57 chr4 10400095 10400200 -173888462 - MIR SINE MIR -29 179 75 444 292 8 0 chr4 10400424 10400544 -173888118 + MIR3 SINE MIR 81 201 -7 263 367 41 0 chr4 10400804 10400902 -173887760 - L2 LINE L2 -12 3301 3200 1398 158 81 0 chr4 10400974 10401247 -173887415 + AluJo SINE Alu 1 295 -17 216 0 0 0 chr4 10401836 10401860 -173886802 + (CA)n Simple_repeat Simple_repeat 1 24 0 385 298 56 25 chr4 10402223 10402384 -173886278 - MIR SINE MIR -74 188 23 296 295 0 0 chr4 10402801 10402879 -173885783 + CT-rich Low_complexity Low_complexity 2 79 0 353 287 25 0 chr4 10403039 10403163 -173885499 - MLT1J2 LTR MaLR -215 194 67 247 215 92 0 chr4 10403188 10403253 -173885409 - MLT1J1 LTR MaLR -310 136 66 252 200 92 0 chr4 10403278 10403343 -173885319 - MLT1J1 LTR MaLR -310 136 66 5306 181 33 9 chr4 10403470 10404521 -173884141 - L1MC3 LINE L1 -2 7783 6708 2024 214 55 88 chr4 10404548 10405147 -173883515 - MER119 DNA MER1_type 0 583 5 2150 99 0 17 chr4 10405612 10405914 -173882748 + AluSg SINE Alu 1 297 -13 196 320 0 13 chr4 10407699 10407777 -173880885 - L2 LINE L2 -287 2985 2909 204 100 25 0 chr4 10407948 10407988 -173880674 - L2 LINE L2 -218 3054 3014 2149 284 86 25 chr4 10408600 10409711 -173878951 - Charlie7 DNA MER1_type -7 2605 1428 307 235 20 20 chr4 10409769 10409871 -173878791 - Charlie7 DNA MER1_type -2444 168 67 1145 147 0 0 chr4 10409887 10410064 -173878598 - AluSg/x SINE Alu 0 310 134 262 315 196 4 chr4 10410254 10410514 -173878148 + L2 LINE L2 2867 3176 -137 452 174 0 10 chr4 10410939 10411037 -173877625 + GA-rich Low_complexity Low_complexity 1 97 0 1489 184 28 46 chr4 10411591 10411982 -173876680 - Charlie5 DNA MER1_type 0 2617 2234 303 269 120 0 chr4 10411979 10412087 -173876575 - Charlie5 DNA MER1_type -2485 127 7 * 217 288 0 0 chr4 10412903 10412962 -173875700 - L2 LINE L2 -229 3043 2985 399 338 61 13 chr4 10413148 10413376 -173875286 - MER102b DNA MER1_type -1 340 102 181 278 56 14 chr4 10413438 10413510 -173875152 - L2 LINE L2 -569 2745 2671 1348 184 139 65 chr4 10414352 10414754 -173873908 + MSTB1 LTR MaLR 1 432 0 411 294 18 65 chr4 10415038 10415208 -173873454 + MIR3 SINE MIR 33 194 -14 25 51 0 0 chr4 10415623 10415662 -173873000 + AT_rich Low_complexity Low_complexity 1 39 0 383 289 90 0 chr4 10415767 10415931 -173872731 - MIR SINE MIR -5 203 16 209 355 66 13 chr4 10416235 10416387 -173872275 - L2 LINE L2 -206 3066 2907 1710 155 13 26 chr4 10416585 10416889 -173871773 + AluSx SINE Alu 5 304 -8 448 266 55 0 chr4 10417342 10417470 -173871192 - MIR SINE MIR -54 208 74 448 272 96 92 chr4 10417539 10417778 -173870884 + L1ME LINE L1 5290 5529 -592 366 291 118 0 chr4 10418323 10418450 -173870212 - L1ME4a LINE L1 -207 5914 5773 574 307 62 8 chr4 10418468 10418709 -173869953 - MIR SINE MIR -8 254 1 215 228 0 0 chr4 10419020 10419077 -173869585 + A-rich Low_complexity Low_complexity 1 57 0 217 191 0 21 chr4 10419359 10419406 -173869256 + L2 LINE L2 3263 3308 -5 382 266 63 28 chr4 10419975 10420118 -173868544 - MLT1K LTR MaLR -369 219 72 426 39 0 0 chr4 10421152 10421204 -173867458 + (TG)n Simple_repeat Simple_repeat 2 53 0 208 330 30 10 chr4 10421336 10421436 -173867226 + MIR SINE MIR 43 144 -64 298 320 47 16 chr4 10422343 10422471 -173866191 - L2 LINE L2 -5 3267 3136 252 292 87 56 chr4 10424490 10424651 -173864011 + HAL1b LINE L1 482 647 -701 262 297 239 7 chr4 10427070 10427225 -173861437 - L2 LINE L2 -541 2773 2583 287 343 119 21 chr4 10427235 10427521 -173861141 - L2 LINE L2 -870 2444 2131 562 211 29 0 chr4 10427701 10427876 -173860786 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 856 163 12 0 chr4 10427903 10428075 -173860587 + (TCCA)n Simple_repeat Simple_repeat 2 175 0 255 320 16 8 chr4 10428359 10428481 -173860181 + MIR SINE MIR 94 216 -46 236 273 0 0 chr4 10428950 10429005 -173859657 - MIR SINE MIR -68 140 86 983 213 63 14 chr4 10429266 10429473 -173859189 - MER20 DNA MER1_type 0 219 3 188 100 0 0 chr4 10430155 10430185 -173858477 + L2 LINE L2 2948 2977 -336 430 248 51 15 chr4 10430686 10430823 -173857839 + MIR SINE MIR 46 187 -75 860 177 6 0 chr4 10432442 10432617 -173856045 + (TCCA)n Simple_repeat Simple_repeat 4 179 0 839 201 3 0 chr4 10432655 10433013 -173855649 + (TCCA)n Simple_repeat Simple_repeat 1 359 0 221 344 135 43 chr4 10433049 10433212 -173855450 - L2 LINE L2 -3 3310 3133 485 236 24 0 chr4 10433545 10433668 -173854994 - MER58C DNA MER1_type 0 215 90 1385 206 113 21 chr4 10433677 10434100 -173854562 - MLT1C LTR MaLR 0 467 6 244 364 35 14 chr4 10434337 10434480 -173854182 - MIR SINE MIR -28 234 89 261 273 13 13 chr4 10434684 10434761 -173853901 - L3 LINE CR1 -89 1488 1412 896 221 124 0 chr4 10435370 10435628 -173853034 - MLT1C LTR MaLR -153 314 25 219 333 29 36 chr4 10436618 10436756 -173851906 - MIR3 SINE MIR -27 181 45 2280 137 33 22 chr4 10436763 10437122 -173851540 + THE1B LTR MaLR 2 364 0 257 245 134 28 chr4 10437183 10437353 -173851309 + MIR SINE MIR 16 205 -57 192 303 84 67 chr4 10437367 10437486 -173851176 + L2 LINE L2 3189 3309 -4 351 336 0 0 chr4 10437744 10437848 -173850814 - MIR3 SINE MIR -21 187 84 397 283 154 38 chr4 10438970 10439210 -173849452 - HAL1b LINE L1 -629 719 452 325 308 62 82 chr4 10439388 10439596 -173849066 - HAL1 LINE L1 -1218 1289 1086 3110 97 16 9 chr4 10439620 10440062 -173848600 - L1PA11 LINE L1 -3 6171 5727 620 301 42 5 chr4 10440252 10440468 -173848194 + L3 LINE CR1 1294 1517 -60 207 366 47 11 chr4 10442213 10442404 -173846258 - L2 LINE L2 -228 3044 2847 2272 103 0 0 chr4 10442693 10443003 -173845659 - AluSg SINE Alu 0 310 1 646 246 78 6 chr4 10443004 10443183 -173845479 - MIR SINE MIR -35 227 36 253 255 112 20 chr4 10443903 10444001 -173844661 - MIR SINE MIR -58 150 44 719 196 0 0 chr4 10444068 10444201 -173844461 + MLT1D LTR MaLR 368 500 -5 290 266 8 32 chr4 10444442 10444566 -173844096 + CT-rich Low_complexity Low_complexity 1 121 0 22 0 0 0 chr4 10445547 10445569 -173843093 + AT_rich Low_complexity Low_complexity 1 22 0 756 301 77 18 chr4 10445724 10446077 -173842585 + MLT1I LTR MaLR 13 396 -13 246 32 0 0 chr4 10446120 10446151 -173842511 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 260 276 94 47 chr4 10446242 10446369 -173842293 - MLT1G1 LTR MaLR 0 555 423 634 147 0 0 chr4 10446393 10446488 -173842174 + AluJb SINE Alu 207 301 -11 665 279 32 23 chr4 10446488 10446707 -173841955 - MLT1G1 LTR MaLR -359 236 16 287 313 62 23 chr4 10447301 10447429 -173841233 - L2 LINE L2 -1 3271 3139 263 388 18 24 chr4 10448014 10448184 -173840478 + MIR SINE MIR 12 180 -82 2540 218 89 48 chr4 10448259 10448967 -173839695 - MER21B LTR ERV1 -115 748 12 268 303 92 17 chr4 10449099 10449218 -173839444 - L2 LINE L2 0 3272 3145 272 211 92 0 chr4 10450362 10450438 -173838224 - MER92B LTR ERV1 -8 628 546 515 255 182 0 chr4 10451019 10451211 -173837451 - MER92B LTR ERV1 -52 584 358 286 194 41 71 chr4 10451226 10451263 -173837399 - MER92B LTR ERV1 -385 251 214 2273 105 0 0 chr4 10451263 10451569 -173837093 - AluSg SINE Alu -4 306 1 286 194 41 71 chr4 10451569 10451629 -173837033 - MER92B LTR ERV1 -422 214 157 2007 152 7 0 chr4 10453114 10453424 -173835238 - AluSx SINE Alu 0 312 1 646 142 35 0 chr4 10453515 10453628 -173835034 - MLT1D LTR MaLR -17 488 372 381 93 0 0 chr4 10453947 10454001 -173834661 + (CA)n Simple_repeat Simple_repeat 2 55 0 283 298 35 15 chr4 10454012 10454210 -173834452 - L1MEd LINE L1 -3701 2428 2227 1267 127 24 19 chr4 10454211 10454416 -173834246 - AluSq SINE Alu -40 273 68 1025 170 12 0 chr4 10454772 10454943 -173833719 + AluSg/x SINE Alu 132 304 -6 197 33 33 0 chr4 10454955 10454985 -173833677 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9400 57 8 108 chr4 10454989 10456511 -173832151 - SVA Other Other -17 1369 1 493 287 105 29 chr4 10456695 10457113 -173831549 - L1MEd LINE L1 -5049 1070 621 308 144 51 42 chr4 10457278 10457396 -173831266 + (TG)n Simple_repeat Simple_repeat 2 120 0 1935 131 67 62 chr4 10457465 10457617 -173831045 + THE1C LTR MaLR 1 151 -224 2136 56 63 0 chr4 10457617 10457901 -173830761 - AluY SINE Alu -9 302 1 1935 131 67 62 chr4 10457901 10458121 -173830541 + THE1C LTR MaLR 151 375 0 991 301 100 30 chr4 10458273 10458744 -173829918 - MLT1J LTR MaLR -6 505 2 253 271 32 101 chr4 10458782 10458970 -173829692 - L1MEd LINE L1 -5934 185 11 229 323 141 0 chr4 10459969 10460068 -173828594 - MLT1J LTR MaLR -359 152 40 246 318 94 40 chr4 10460789 10460990 -173827672 - MIR SINE MIR -15 247 36 249 253 154 62 chr4 10461013 10461175 -173827487 - MIR3 SINE MIR -21 187 11 288 311 0 0 chr4 10461251 10461325 -173827337 - LTR16C LTR ERVL 0 491 418 331 248 109 0 chr4 10461390 10461491 -173827171 - LTR16C LTR ERVL -178 313 202 189 317 173 36 chr4 10461568 10461817 -173826845 + L2 LINE L2 3019 3301 -12 231 302 155 9 chr4 10462101 10462217 -173826445 - L2 LINE L2 -16 3256 3124 195 228 18 18 chr4 10462430 10462487 -173826175 + MIR SINE MIR 70 126 -136 218 267 105 87 chr4 10462769 10462941 -173825721 + L2 LINE L2 3062 3236 -36 582 239 161 63 chr4 10464946 10465201 -173823461 + MER58B DNA MER1_type 62 341 0 591 189 26 13 chr4 10467069 10467298 -173821364 + (TCCA)n Simple_repeat Simple_repeat 1 232 0 297 132 26 26 chr4 10467341 10467417 -173821245 + (TCCA)n Simple_repeat Simple_repeat 2 77 0 776 163 17 6 chr4 10467429 10467607 -173821055 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 629 134 28 34 chr4 10467647 10467826 -173820836 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 851 133 17 17 chr4 10467864 10468044 -173820618 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 581 165 28 23 chr4 10468089 10468265 -173820397 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 602 203 25 0 chr4 10468317 10468480 -173820182 + (TCCA)n Simple_repeat Simple_repeat 3 169 0 282 305 48 0 chr4 10468484 10468589 -173820073 - L2 LINE L2 -5 3308 3199 209 260 40 0 chr4 10468606 10468656 -173820006 + MER91A DNA MER1_type 19 70 -126 494 160 34 117 chr4 10469167 10469373 -173819289 + MER53 DNA DNA 1 189 0 762 146 35 0 chr4 10469602 10469773 -173818889 + (TCCA)n Simple_repeat Simple_repeat 2 178 0 300 235 18 24 chr4 10470437 10470603 -173818059 + (TCCA)n Simple_repeat Simple_repeat 4 168 0 183 80 0 0 chr4 10470657 10470682 -173817980 + (CCCA)n Simple_repeat Simple_repeat 3 27 0 330 345 61 39 chr4 10470704 10471014 -173817648 - L2 LINE L2 -1 3271 2955 240 337 30 10 chr4 10471036 10471137 -173817525 + MIR SINE MIR 47 149 -113 446 329 162 22 chr4 10471269 10472140 -173816522 + L2 LINE L2 2174 3203 -110 255 31 0 0 chr4 10472140 10472172 -173816490 + (CA)n Simple_repeat Simple_repeat 2 33 0 446 329 162 22 chr4 10472172 10472271 -173816391 + L2 LINE L2 3203 3287 -26 495 89 0 33 chr4 10473298 10473388 -173815274 + (TCC)n Simple_repeat Simple_repeat 3 89 0 409 292 34 34 chr4 10473712 10473890 -173814772 - LTR16A1 LTR ERVL -218 239 62 873 161 3 0 chr4 10474605 10474898 -173813764 + (TG)n Simple_repeat Simple_repeat 1 294 0 253 146 0 0 chr4 10475707 10475748 -173812914 + L3 LINE CR1 1425 1465 -112 200 275 14 0 chr4 10476704 10476773 -173811889 + L2 LINE L2 2015 2084 -1230 202 295 63 11 chr4 10477059 10477154 -173811508 + L2 LINE L2 3160 3259 -54 350 271 120 30 chr4 10477280 10477413 -173811249 + MIR SINE MIR 108 252 -10 402 313 53 48 chr4 10478588 10478796 -173809866 + MIR SINE MIR 36 244 -18 389 259 6 0 chr4 10478980 10479138 -173809524 + GA-rich Low_complexity Low_complexity 1 159 0 1688 141 0 28 chr4 10479159 10479450 -173809212 + AluJo SINE Alu 1 283 -29 521 103 0 0 chr4 10479382 10479450 -173809212 + AluJ/FRAM SINE Alu 216 320 0 279 0 54 0 chr4 10479450 10479487 -173809175 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 328 294 32 97 chr4 10479693 10479852 -173808810 - L1ME4a LINE L1 -23 6098 5870 271 273 0 23 chr4 10479852 10479940 -173808722 + (TATG)n Simple_repeat Simple_repeat 3 88 0 328 294 32 97 chr4 10479940 10479972 -173808690 - L1ME4a LINE L1 -251 5870 5838 344 313 62 58 chr4 10479972 10480180 -173808482 + L2 LINE L2 3104 3312 -1 1925 150 3 0 chr4 10480281 10480587 -173808075 - AluJb SINE Alu -5 307 1 255 31 0 0 chr4 10481484 10481516 -173807146 + (CAGAA)n Simple_repeat Simple_repeat 5 36 0 2254 72 10 0 chr4 10481543 10481836 -173806826 + AluY SINE Alu 1 296 -15 252 253 120 0 chr4 10481896 10481971 -173806691 - L2 LINE L2 -25 3288 3205 615 231 18 1 chr4 10482014 10482199 -173806463 + L1MB4 LINE L1 5992 6180 0 500 172 35 132 chr4 10482383 10482557 -173806105 + L1MA7 LINE L1 6133 6289 -2 32 0 0 0 chr4 10482557 10482589 -173806073 + AT_rich Low_complexity Low_complexity 1 32 0 443 374 75 19 chr4 10482865 10483397 -173805265 + L2 LINE L2 2092 2653 -661 210 118 0 0 chr4 10484335 10484369 -173804293 + (T)n Simple_repeat Simple_repeat 1 34 0 299 316 73 7 chr4 10485320 10485456 -173803206 + MIR SINE MIR 81 225 -37 275 286 95 24 chr4 10486168 10486294 -173802368 - L2 LINE L2 -179 3093 2959 365 263 29 36 chr4 10486637 10486774 -173801888 + L2 LINE L2 2921 3056 -216 2084 112 10 0 chr4 10487395 10487691 -173800971 + AluSx SINE Alu 1 299 -13 2393 260 92 4 chr4 10487708 10488486 -173800176 + L1MC3 LINE L1 6869 7715 -70 263 263 222 0 chr4 10488536 10488635 -173800027 + MIR SINE MIR 14 134 -128 335 136 0 45 chr4 10488641 10488707 -173799955 + L1MD3 LINE L1 7920 7982 -13 195 209 47 0 chr4 10489482 10489525 -173799137 + MIR SINE MIR 14 58 -204 312 127 0 0 chr4 10489665 10489720 -173798942 + (TGAA)n Simple_repeat Simple_repeat 2 56 0 1096 262 77 25 chr4 10490083 10490522 -173798140 - MLT1C LTR MaLR 0 467 6 251 366 58 31 chr4 10490678 10490902 -173797760 + L2 LINE L2 3084 3313 0 318 98 0 0 chr4 10490999 10491050 -173797612 + (TGAA)n Simple_repeat Simple_repeat 4 54 0 596 271 81 9 chr4 10492449 10492670 -173795992 - MLT1D LTR MaLR -8 497 261 234 248 0 0 chr4 10492716 10492825 -173795837 + (TG)n Simple_repeat Simple_repeat 1 109 0 432 233 0 0 chr4 10492843 10493015 -173795647 + (TG)n Simple_repeat Simple_repeat 2 173 0 360 244 0 0 chr4 10493050 10493230 -173795432 + (TG)n Simple_repeat Simple_repeat 1 180 0 198 241 0 0 chr4 10493291 10493378 -173795284 + (TG)n Simple_repeat Simple_repeat 1 87 0 347 247 6 0 chr4 10493431 10493589 -173795073 + (TG)n Simple_repeat Simple_repeat 1 159 0 474 228 0 0 chr4 10493608 10493846 -173794816 + (TG)n Simple_repeat Simple_repeat 1 238 0 481 268 39 22 chr4 10493852 10494031 -173794631 - MLT1D LTR MaLR -308 197 16 303 308 154 0 chr4 10494088 10494283 -173794379 - LTR33 LTR ERVL -247 274 50 1887 132 66 44 chr4 10494474 10494839 -173793823 - THE1C LTR MaLR -2 373 1 234 231 0 31 chr4 10494899 10494964 -173793698 + L2 LINE L2 3157 3219 -53 1113 109 17 19 chr4 10495000 10495358 -173793304 + (TGGA)n Simple_repeat Simple_repeat 1 358 0 250 217 12 24 chr4 10496201 10496284 -173792378 - MLT1H LTR MaLR -357 192 111 261 279 70 0 chr4 10496831 10496917 -173791745 - L2 LINE L2 -188 3084 2993 376 250 58 17 chr4 10498662 10498782 -173789880 + MIR SINE MIR 80 204 -58 207 88 0 0 chr4 10498784 10498818 -173789844 + (TG)n Simple_repeat Simple_repeat 1 34 0 299 278 216 0 chr4 10498947 10499044 -173789618 - L2 LINE L2 -14 3299 3182 476 274 0 0 chr4 10499194 10499318 -173789344 + MER58B DNA MER1_type 218 341 0 859 148 77 0 chr4 10499631 10499800 -173788862 + MLT1B LTR MaLR 8 189 -201 773 153 0 8 chr4 10499833 10499957 -173788705 + FRAM SINE Alu 49 171 -5 805 194 70 0 chr4 10499961 10500147 -173788515 + MLT1B LTR MaLR 192 390 0 270 221 63 32 chr4 10500365 10500460 -173788202 - L2 LINE L2 -258 3014 2917 240 35 0 0 chr4 10501491 10501520 -173787142 + (GGA)n Simple_repeat Simple_repeat 2 30 0 361 218 129 0 chr4 10501786 10501887 -173786775 - L2 LINE L2 -16 3297 3184 224 267 134 62 chr4 10502406 10502695 -173785967 - L2 LINE L2 -188 3084 2771 248 365 21 0 chr4 10503481 10503577 -173785085 + MIR SINE MIR 85 182 -80 187 303 97 28 chr4 10503663 10503808 -173784854 - MIR SINE MIR -21 241 87 242 225 144 9 chr4 10503907 10504018 -173784644 - MIR SINE MIR -64 144 19 492 32 0 0 chr4 10504018 10504080 -173784582 + (CAGCC)n Simple_repeat Simple_repeat 4 65 0 1776 191 70 5 chr4 10504821 10505220 -173783442 - LTR32 LTR ERVL 0 471 47 347 237 0 3 chr4 10506138 10506296 -173782366 - MER45C DNA AcHobo 0 953 756 647 255 165 48 chr4 10506302 10506553 -173782109 - MER45C DNA AcHobo -533 420 109 2228 89 3 0 chr4 10506553 10506845 -173781817 - AluSp SINE Alu -20 293 1 647 255 165 48 chr4 10506845 10506969 -173781693 - MER45C DNA AcHobo -844 109 1 225 0 0 0 chr4 10508505 10508530 -173780132 + (CA)n Simple_repeat Simple_repeat 2 26 0 349 275 28 0 chr4 10508672 10508781 -173779881 - MER45C DNA AcHobo -759 194 83 574 214 6 16 chr4 10510604 10510786 -173777876 + (TGAG)n Simple_repeat Simple_repeat 1 180 0 298 183 33 0 chr4 10510788 10510848 -173777814 + (TGAA)n Simple_repeat Simple_repeat 3 64 0 1038 151 1 6 chr4 10510848 10511650 -173777012 + (TGAG)n Simple_repeat Simple_repeat 1 797 0 204 40 0 0 chr4 10512579 10512604 -173776058 + (A)n Simple_repeat Simple_repeat 1 25 0 368 286 119 24 chr4 10513213 10513423 -173775239 + MIR SINE MIR 31 260 -2 272 345 37 15 chr4 10513881 10514050 -173774612 + MIR SINE MIR 3 172 -68 391 288 22 66 chr4 10514241 10514442 -173774220 + MIR3 SINE MIR 15 206 -56 182 61 0 30 chr4 10515518 10515551 -173773111 + (CCCCCA)n Simple_repeat Simple_repeat 4 35 0 395 277 31 15 chr4 10516003 10516133 -173772529 - MER63A DNA MER1_type -26 184 53 981 144 0 0 chr4 10516228 10516272 -173772390 + (TGAG)n Simple_repeat Simple_repeat 1 218 0 981 144 0 0 chr4 10516272 10516446 -173772216 + (TGAG)n Simple_repeat Simple_repeat 4 177 0 1071 102 17 0 chr4 10516476 10516653 -173772009 + (TGAG)n Simple_repeat Simple_repeat 1 180 0 321 89 0 0 chr4 10517011 10517056 -173771606 + (GGA)n Simple_repeat Simple_repeat 3 47 0 464 371 125 0 chr4 10518197 10518477 -173770185 - L3 LINE CR1 -33 1544 1230 360 274 75 52 chr4 10518654 10518906 -173769756 + L2 LINE L2 2842 3099 -173 1261 246 62 42 chr4 10519149 10519646 -173769016 - MER90 LTR ERV1 0 614 108 310 313 0 0 chr4 10520943 10521023 -173767639 + L2 LINE L2 3211 3290 -23 331 330 19 0 chr4 10521138 10521241 -173767421 - MIR SINE MIR -111 151 47 264 349 28 94 chr4 10521349 10521784 -173766878 - L2 LINE L2 -1 3312 2907 305 307 93 29 chr4 10523129 10523409 -173765253 - L1ME4a LINE L1 -230 5891 5594 300 422 12 12 chr4 10523479 10523640 -173765022 - L1ME4a LINE L1 -637 5484 5324 6141 180 50 43 chr4 10523817 10525244 -173763418 + L1M4c LINE L1 1 1442 -4942 2173 117 3 0 chr4 10525244 10525544 -173763118 - AluSx SINE Alu -10 302 2 6141 180 50 43 chr4 10525544 10525702 -173762960 + L1M4c LINE L1 1442 1597 -4787 474 320 10 10 chr4 10526000 10526194 -173762468 + MLT1J LTR MaLR 23 216 -295 553 345 93 13 chr4 10526461 10526849 -173761813 + L1ME4a LINE L1 5478 5896 -225 2425 59 20 3 chr4 10527600 10527906 -173760756 + AluY SINE Alu 1 311 0 191 323 16 0 chr4 10528859 10528921 -173759741 + L2 LINE L2 3249 3311 -2 450 219 21 20 chr4 10529113 10529244 -173759418 - MIR SINE MIR -43 165 33 227 255 0 0 chr4 10529570 10529621 -173759041 + C-rich Low_complexity Low_complexity 4 54 0 667 175 267 0 chr4 10529641 10529858 -173758804 - MER58 DNA MER1_type 0 2420 2146 227 243 0 27 chr4 10529934 10530045 -173758617 + CT-rich Low_complexity Low_complexity 1 108 0 504 196 0 30 chr4 10530099 10530267 -173758395 + CT-rich Low_complexity Low_complexity 1 163 0 195 214 0 0 chr4 10530321 10530391 -173758271 + CT-rich Low_complexity Low_complexity 2 71 0 287 304 35 17 chr4 10530688 10530803 -173757859 - MIR SINE MIR -70 138 22 453 244 17 9 chr4 10531708 10531823 -173756839 + MIR SINE MIR 6 121 -141 693 298 48 4 chr4 10532073 10532301 -173756361 + MIR SINE MIR 6 243 -19 655 251 184 43 chr4 10532639 10533058 -173755604 + MLT1D LTR MaLR 3 480 -25 530 241 60 79 chr4 10534199 10534464 -173754198 + MLT1D-int LTR MaLR 1112 1371 0 1788 212 37 33 chr4 10534475 10534966 -173753696 + MLT1D LTR MaLR 12 504 -1 251 193 96 36 chr4 10535026 10535109 -173753553 + MIR SINE MIR 174 261 -1 201 224 41 0 chr4 10535124 10535173 -173753489 + MIR SINE MIR 78 128 -134 378 209 180 57 chr4 10536415 10536626 -173752036 - MLT1H LTR MaLR -14 535 299 404 288 103 32 chr4 10536632 10536913 -173751749 - MLT1H LTR MaLR -102 447 147 221 282 18 3 chr4 10537005 10537073 -173751589 - MIR SINE MIR -119 89 21 230 359 127 0 chr4 10537518 10537660 -173751002 + MIR SINE MIR 77 236 -26 243 358 8 8 chr4 10537699 10537819 -173750843 + L2 LINE L2 2933 3052 -220 270 279 0 0 chr4 10537904 10537965 -173750697 + MIR SINE MIR 110 170 -92 359 297 27 18 chr4 10537965 10538076 -173750586 - L2 LINE L2 -1 3312 3201 2233 104 7 0 chr4 10538693 10538992 -173749670 + AluSx SINE Alu 1 301 -11 341 242 87 27 chr4 10539182 10539331 -173749331 - L1ME4a LINE L1 -12 6109 5952 938 214 45 15 chr4 10541014 10541280 -173747382 - L1MB7 LINE L1 -9 6175 5902 234 261 0 0 chr4 10541574 10541620 -173747042 - MIR SINE MIR -106 156 111 348 314 42 0 chr4 10541829 10541947 -173746715 - MIR SINE MIR -90 172 50 606 158 40 0 chr4 10543104 10543336 -173745326 + (TGGA)n Simple_repeat Simple_repeat 1 241 0 715 164 29 0 chr4 10543361 10543532 -173745130 + (TGGA)n Simple_repeat Simple_repeat 3 178 0 535 156 50 0 chr4 10543557 10543717 -173744945 + (TGGA)n Simple_repeat Simple_repeat 3 170 0 776 145 36 16 chr4 10543737 10544045 -173744617 + (TGGA)n Simple_repeat Simple_repeat 1 314 0 228 317 37 0 chr4 10544532 10544614 -173744048 + L2 LINE L2 3188 3272 0 332 262 58 9 chr4 10545664 10545774 -173742888 + MIR3 SINE MIR 58 174 -53 212 341 171 43 chr4 10545843 10546142 -173742520 - L2 LINE L2 -23 3249 2913 299 226 66 47 chr4 10547608 10547714 -173740948 + MIR3 SINE MIR 101 208 0 201 278 19 0 chr4 10548006 10548060 -173740602 - L2 LINE L2 -1 3271 3217 307 371 111 22 chr4 10548069 10548430 -173740232 + L2 LINE L2 2877 3269 -3 1080 128 0 0 chr4 10548509 10548739 -173739923 + (TGGA)n Simple_repeat Simple_repeat 1 230 0 981 142 0 0 chr4 10548741 10548910 -173739752 + (TGGG)n Simple_repeat Simple_repeat 2 170 0 1386 68 0 0 chr4 10548911 10549318 -173739344 + (TGGA)n Simple_repeat Simple_repeat 1 585 0 264 260 55 0 chr4 10549784 10549857 -173738805 + MIR3 SINE MIR 115 191 -17 192 300 0 33 chr4 10553102 10553162 -173735500 - L3 LINE CR1 -110 1467 1410 195 238 79 16 chr4 10553877 10553940 -173734722 - L3 LINE CR1 -543 1034 968 339 200 88 0 chr4 10554200 10554280 -173734382 + MIR SINE MIR 66 152 -110 413 160 8 50 chr4 10554484 10554603 -173734059 + GA-rich Low_complexity Low_complexity 2 115 0 202 309 82 0 chr4 10554797 10554907 -173733755 - L2 LINE L2 -461 2853 2735 316 232 24 0 chr4 10555721 10555803 -173732859 + MIR SINE MIR 61 144 -118 434 275 186 36 chr4 10555968 10556215 -173732447 - L2 LINE L2 0 3272 2989 197 181 28 56 chr4 10556880 10556952 -173731710 - L2 LINE L2 -176 3096 3027 835 255 115 23 chr4 10558321 10558732 -173729930 + MLT1C LTR MaLR 40 488 -17 362 168 0 70 chr4 10559331 10559516 -173729146 + (GGCTG)n Simple_repeat Simple_repeat 2 173 0 433 150 0 70 chr4 10559588 10559775 -173728887 + (GGCTG)n Simple_repeat Simple_repeat 2 175 0 369 174 0 65 chr4 10559874 10560154 -173728508 + (GGCTG)n Simple_repeat Simple_repeat 1 261 0 217 339 0 0 chr4 10560289 10560351 -173728311 - MIR SINE MIR -55 153 92 354 344 33 0 chr4 10560470 10560592 -173728070 - L2 LINE L2 -6 3307 3182 272 278 52 61 chr4 10560957 10561072 -173727590 + L2 LINE L2 3200 3313 0 240 217 83 75 chr4 10563524 10563644 -173725018 + MIR SINE MIR 25 145 -117 453 149 0 0 chr4 10565017 10565091 -173723571 + MIR SINE MIR 71 144 -118 523 273 40 48 chr4 10566399 10566648 -173722014 - MER46C DNA MER2_type -2 336 90 950 177 89 7 chr4 10566722 10567090 -173721572 - MER31A LTR ERV1 -7 478 27 243 241 17 0 chr4 10567383 10567441 -173721221 + MIR SINE MIR 87 145 -63 688 206 265 5 chr4 10567687 10567906 -173720756 - MLT1F1 LTR MaLR -285 282 7 365 306 106 6 chr4 10569085 10569245 -173719417 + L2 LINE L2 2994 3169 -103 845 197 17 7 chr4 10569614 10570037 -173718625 + (TCCA)n Simple_repeat Simple_repeat 1 427 0 281 293 213 32 chr4 10570446 10570794 -173717868 + L2 LINE L2 2859 3269 -3 229 327 52 59 chr4 10570810 10570963 -173717699 - MIR3 SINE MIR -45 163 12 239 156 39 0 chr4 10571095 10571152 -173717510 + MIR SINE MIR 99 157 -62 343 244 62 31 chr4 10572044 10572237 -173716425 - L1ME4a LINE L1 -1 6120 5922 393 285 54 8 chr4 10572629 10572799 -173715863 - MIR3 SINE MIR -46 162 37 228 122 0 0 chr4 10573333 10573374 -173715288 + (CA)n Simple_repeat Simple_repeat 2 42 0 3165 234 71 40 chr4 10573527 10574485 -173714177 + L1MD1 LINE L1 4813 5831 -411 2020 132 0 3 chr4 10574485 10574781 -173713881 + AluSx SINE Alu 1 295 -17 3165 234 71 40 chr4 10574781 10575201 -173713461 + L1MD1 LINE L1 5831 6237 -5 238 284 82 8 chr4 10575233 10575367 -173713295 + L1ME4a LINE L1 5978 6121 0 188 182 0 0 chr4 10575669 10575702 -173712960 + MIR SINE MIR 117 149 -113 884 188 152 25 chr4 10575783 10576059 -173712603 - MLT1C LTR MaLR -140 327 17 213 213 0 0 chr4 10576239 10576286 -173712376 + GA-rich Low_complexity Low_complexity 3 49 0 252 86 0 0 chr4 10576902 10576937 -173711725 + (TGAG)n Simple_repeat Simple_repeat 1 35 0 954 179 3 4 chr4 10577409 10578211 -173710451 + (TGG)n Simple_repeat Simple_repeat 1 801 0 704 144 0 8 chr4 10578226 10578358 -173710304 + (TGG)n Simple_repeat Simple_repeat 1 131 0 218 350 21 43 chr4 10578912 10579052 -173709610 - L2 LINE L2 -453 2861 2725 248 318 37 17 chr4 10579227 10579358 -173709304 + MIR3 SINE MIR 15 147 -74 1502 127 5 9 chr4 10579656 10579899 -173708763 + AluSg SINE Alu 62 303 0 333 197 82 0 chr4 10580350 10580440 -173708222 + MIR SINE MIR 64 160 -64 231 180 20 40 chr4 10581034 10581084 -173707578 - MIR SINE MIR -56 152 104 182 359 98 0 chr4 10581128 10581220 -173707442 - L2 LINE L2 -34 3238 3138 261 278 41 10 chr4 10583269 10583366 -173705296 - MLT1J1 LTR MaLR -303 143 44 2817 191 69 1 chr4 10583527 10584183 -173704479 + L1MB7 LINE L1 5444 6143 -41 4449 188 21 40 chr4 10584389 10585606 -173703056 + L1M2 LINE L1 4315 5501 -744 210 345 109 24 chr4 10585946 10586111 -173702551 + L2 LINE L2 3030 3208 -64 248 298 20 57 chr4 10586146 10586268 -173702394 - MIR SINE MIR -70 138 35 414 230 20 1 chr4 10587983 10588095 -173700567 - MIR SINE MIR -63 145 33 277 360 9 9 chr4 10588827 10588938 -173699724 - L2 LINE L2 -196 3076 2966 205 383 145 9 chr4 10588950 10589164 -173699498 + L2 LINE L2 2260 2502 -812 211 307 13 0 chr4 10589176 10589251 -173699411 - MIR SINE MIR -177 85 10 209 326 12 0 chr4 10589712 10589779 -173698883 + MIR SINE MIR 74 145 -63 195 235 226 17 chr4 10590095 10590210 -173698452 - L2 LINE L2 -120 3152 3014 647 251 165 56 chr4 10590995 10591426 -173697236 - MLT1G3 LTR MaLR -3 539 92 182 253 39 54 chr4 10591461 10591569 -173697093 - MIR SINE MIR -64 144 50 254 254 74 96 chr4 10591600 10591801 -173696861 - MIR SINE MIR -35 227 19 182 323 0 16 chr4 10592016 10592078 -173696584 - MIR SINE MIR -109 153 93 346 339 119 0 chr4 10592312 10592489 -173696173 - MIR SINE MIR -14 248 51 218 204 0 0 chr4 10592866 10592910 -173695752 - MIR SINE MIR -61 147 104 353 240 156 7 chr4 10594540 10594694 -173693968 - MIR3 SINE MIR -15 193 17 216 0 0 0 chr4 10596679 10596703 -173691959 + (GA)n Simple_repeat Simple_repeat 2 25 0 408 88 0 0 chr4 10597097 10597154 -173691508 + (CA)n Simple_repeat Simple_repeat 1 57 0 184 311 27 0 chr4 10597242 10597316 -173691346 - L2 LINE L2 -38 3275 3200 1230 264 89 12 chr4 10598770 10599263 -173689399 + MER90 LTR ERV1 84 614 0 433 340 20 40 chr4 10600502 10600752 -173687910 - L2 LINE L2 -825 2489 2245 960 286 92 65 chr4 10600893 10601600 -173687062 - L2 LINE L2 -1449 1865 1140 2412 47 3 10 chr4 10602621 10602920 -173685742 + AluY SINE Alu 1 297 -14 232 270 58 44 chr4 10603159 10603296 -173685366 + HAL1b LINE L1 315 453 -895 1782 318 73 44 chr4 10604284 10604720 -173683942 - ERVL LTR ERVL -2930 2834 2412 2263 115 144 3 chr4 10604720 10605095 -173683567 - MSTA LTR MaLR 0 428 1 1782 318 73 44 chr4 10605095 10605927 -173682735 - ERVL LTR ERVL -3352 2412 1529 2208 68 10 0 chr4 10606417 10606709 -173681953 + AluSq SINE Alu 1 295 -18 212 289 0 0 chr4 10606731 10606783 -173681879 + MIR SINE MIR 189 240 -22 2680 93 8 3 chr4 10607186 10607539 -173681123 + THE1A LTR MaLR 1 355 0 243 240 0 0 chr4 10609198 10609248 -173679414 + L2 LINE L2 3223 3272 0 1362 238 57 59 chr4 10610245 10610774 -173677888 - MER74A LTR ERVL -1 557 30 351 296 106 8 chr4 10611669 10611801 -173676861 + L2 LINE L2 3125 3269 -3 22 0 0 0 chr4 10616321 10616343 -173672319 + AT_rich Low_complexity Low_complexity 1 22 0 1174 240 50 8 chr4 10617201 10617560 -173671102 + L1MB3 LINE L1 5592 5965 -218 755 151 0 43 chr4 10617561 10617700 -173670962 + FLAM_C SINE Alu 1 133 -10 940 149 0 0 chr4 10617742 10617890 -173670772 + L1MB3 LINE L1 6036 6183 0 198 298 125 39 chr4 10618031 10618135 -173670527 - MIR SINE MIR -37 225 113 1755 132 7 15 chr4 10618135 10618408 -173670254 + AluJo SINE Alu 14 284 -28 223 251 194 52 chr4 10619008 10619211 -173669451 + MIR SINE MIR 1 227 -35 1719 163 24 7 chr4 10621100 10621389 -173667273 + AluJb SINE Alu 1 294 -18 280 283 78 56 chr4 10621773 10621953 -173666709 - MIR3 SINE MIR -7 201 18 192 328 102 55 chr4 10623520 10623971 -173664691 - L2 LINE L2 -1229 2085 1614 423 294 128 11 chr4 10624347 10624527 -173664135 + L2 LINE L2 3082 3282 -31 407 219 12 0 chr4 10624541 10624623 -173664039 + FLAM_A SINE Alu 1 83 -59 223 273 38 15 chr4 10624634 10624766 -173663896 + (TA)n Simple_repeat Simple_repeat 1 135 0 191 280 160 0 chr4 10624902 10624977 -173663685 - MIR SINE MIR -79 183 97 182 376 82 0 chr4 10625704 10625789 -173662873 + L2 LINE L2 3204 3295 -18 680 133 9 0 chr4 10826559 10826664 -173461998 + AluJo/FRAM SINE Alu 187 292 -20 365 206 10 20 chr4 10826675 10826777 -173461885 + L1MC/D LINE L1 4926 5026 -1120 2589 185 61 3 chr4 10826779 10827375 -173461287 + L1MC/D LINE L1 5191 5814 -428 873 259 119 55 chr4 10827789 10827980 -173460682 - MLT1F1 LTR MaLR -74 519 342 1887 194 36 12 chr4 10827980 10828398 -173460264 - MSTA LTR MaLR 0 428 1 873 259 119 55 chr4 10828398 10828667 -173459995 - MLT1F1 LTR MaLR -251 342 1 1839 171 0 13 chr4 10828701 10829017 -173459645 + AluJb SINE Alu 1 312 0 1286 133 0 0 chr4 10829028 10829201 -173459461 + AluSg SINE Alu 1 173 -137 230 348 35 7 chr4 10829671 10829812 -173458850 + L3 LINE CR1 1229 1373 -204 2122 138 3 0 chr4 10829872 10830162 -173458500 - AluJb SINE Alu -21 291 1 269 123 5 0 chr4 10830243 10830292 -173458370 - MLT2C1 LTR ERVL -2 395 358 1005 145 0 0 chr4 10830308 10830487 -173458175 + (TGGA)n Simple_repeat Simple_repeat 2 180 0 531 253 188 5 chr4 10830630 10830832 -173457830 - MIR SINE MIR -1 261 23 507 281 98 12 chr4 10831196 10831360 -173457302 - MER5B DNA MER1_type 0 178 1 240 239 30 30 chr4 10831741 10831808 -173456854 + MIR SINE MIR 16 82 -126 1673 167 7 4 chr4 10833194 10833464 -173455198 + AluJo SINE Alu 33 303 -9 232 254 0 28 chr4 10833468 10833539 -173455123 - MER112 DNA MER1_type -121 139 71 887 89 35 84 chr4 10833933 10834111 -173454551 - L1MA5A LINE L1 -3 6294 6126 2413 90 0 0 chr4 10834111 10834410 -173454252 - AluSx SINE Alu -13 299 1 887 89 35 84 chr4 10834410 10834433 -173454229 - L1MA5A LINE L1 -171 6126 6103 2162 156 32 0 chr4 10834433 10834804 -173453858 - L1MA5A LINE L1 -363 5934 5549 1926 124 20 20 chr4 10834806 10835104 -173453558 - AluSq SINE Alu -15 298 1 994 104 8 0 chr4 10835104 10835238 -173453424 - AluSq/x SINE Alu -178 135 1 458 139 0 12 chr4 10835239 10835325 -173453337 - L1MA5A LINE L1 -737 5563 5479 360 315 145 13 chr4 10835628 10835725 -173452937 + L3 LINE CR1 1234 1317 -260 2005 157 0 28 chr4 10835725 10836044 -173452618 + AluJo SINE Alu 1 310 -2 360 315 145 13 chr4 10836044 10836181 -173452481 + L3 LINE CR1 1317 1499 -78 943 226 62 28 chr4 10836587 10836875 -173451787 + MER63B DNA MER1_type 39 336 -100 29 0 0 0 chr4 10836875 10836904 -173451758 + AT_rich Low_complexity Low_complexity 1 29 0 2204 110 4 0 chr4 10836912 10837226 -173451436 + AluSp SINE Alu 1 315 0 251 183 12 0 chr4 10837227 10837309 -173451353 + (TA)n Simple_repeat Simple_repeat 1 83 0 1832 174 3 0 chr4 10837316 10837610 -173451052 - AluJo SINE Alu -17 295 1 454 206 23 30 chr4 10837616 10837747 -173450915 + MER63B DNA MER1_type 304 433 -2 1462 140 34 45 chr4 10837987 10838279 -173450383 + THE1C LTR MaLR 87 375 0 218 259 0 12 chr4 10838279 10838364 -173450298 + (CA)n Simple_repeat Simple_repeat 1 84 0 2052 113 3 3 chr4 10838427 10838747 -173449915 + AluSx SINE Alu 1 320 0 307 307 106 30 chr4 10838764 10839028 -173449634 + L1ME4a LINE L1 5837 6120 -1 1759 120 76 10 chr4 10840354 10840655 -173448007 + LTR24C LTR ERV1 1 321 -314 430 317 158 19 chr4 10840661 10840983 -173447679 + MLT1K LTR MaLR 110 476 -112 437 146 10 87 chr4 10841008 10841111 -173447551 + MER4D LTR ERV1 1 95 -808 207 0 0 0 chr4 10841211 10841234 -173447428 + (A)n Simple_repeat Simple_repeat 1 23 0 1860 154 13 35 chr4 10841312 10841624 -173447038 + AluSx SINE Alu 5 309 -3 1019 175 82 39 chr4 10841797 10841929 -173446733 + AluJo SINE Alu 1 147 -165 2369 113 0 0 chr4 10841929 10842240 -173446422 + AluSx SINE Alu 1 311 -1 1019 175 82 39 chr4 10842240 10842313 -173446349 + AluJo SINE Alu 147 215 -97 284 367 11 0 chr4 10842313 10842403 -173446259 - LTR16C LTR ERVL -287 204 114 224 285 86 99 chr4 10842555 10842927 -173445735 + L2 LINE L2 2858 3224 -48 2494 137 23 44 chr4 10842947 10843420 -173445242 - LTR24 LTR ERV1 0 467 5 266 247 206 16 chr4 10843469 10843663 -173444999 - L2 LINE L2 -235 3037 2807 2436 94 3 0 chr4 10844715 10845023 -173443639 + AluSx SINE Alu 1 309 -3 1326 209 38 59 chr4 10845081 10845454 -173443208 + MER47A DNA MER2_type 1 365 -1 441 230 27 61 chr4 10845459 10845607 -173443055 - L2 LINE L2 -18 3295 3153 2287 77 38 0 chr4 10847243 10847530 -173441132 + AluSc SINE Alu 1 298 -11 1775 176 6 38 chr4 10848101 10848419 -173440243 + AluJo SINE Alu 1 308 -4 1404 208 32 45 chr4 10848666 10848875 -173439787 - MLT1A2 LTR MaLR 0 374 171 2190 111 42 0 chr4 10848875 10849164 -173439498 - AluSc SINE Alu -8 301 1 1404 208 32 45 chr4 10849164 10849333 -173439329 - MLT1A2 LTR MaLR -203 171 1 210 254 0 17 chr4 10849603 10849662 -173439000 + MIR3 SINE MIR 123 180 -28 1575 199 95 34 chr4 10850040 10850564 -173438098 + MER89 LTR ERV1 1 556 -3 1023 121 0 0 chr4 10850830 10850962 -173437700 + AluSp SINE Alu 1 132 -181 2033 111 7 0 chr4 10850964 10851235 -173437427 + AluSp SINE Alu 1 273 -40 2002 95 0 0 chr4 10851335 10851578 -173437084 - AluSq SINE Alu -70 243 1 189 107 0 0 chr4 10851633 10851661 -173437001 + (TCC)n Simple_repeat Simple_repeat 2 29 0 854 296 21 8 chr4 10851677 10851920 -173436742 - MIR SINE MIR -6 256 11 275 337 32 4 chr4 10852008 10852131 -173436531 - MIR SINE MIR -65 143 20 1886 117 29 42 chr4 10852275 10852584 -173436078 - AluSx SINE Alu -7 305 1 531 69 0 0 chr4 10852639 10852711 -173435951 + (TGGA)n Simple_repeat Simple_repeat 1 72 0 217 299 26 26 chr4 10852771 10852848 -173435814 - MIR3 SINE MIR -31 177 101 2108 128 42 31 chr4 10853286 10853646 -173435016 - THE1B LTR MaLR 0 364 1 192 294 86 64 chr4 10854860 10855047 -173433615 - L2 LINE L2 -1262 2052 1862 225 263 0 18 chr4 10855242 10855299 -173433363 + GA-rich Low_complexity Low_complexity 1 56 0 365 314 190 0 chr4 10855385 10855611 -173433051 - L2 LINE L2 0 3313 3045 342 323 56 45 chr4 10855765 10856031 -173432631 - L2 LINE L2 -15 3257 2989 1973 128 6 38 chr4 10856054 10856373 -173432289 + AluSx SINE Alu 1 309 -3 324 308 121 5 chr4 10856376 10856569 -173432093 - MIR SINE MIR -11 251 34 687 177 18 0 chr4 10856745 10856909 -173431753 + (TCCA)n Simple_repeat Simple_repeat 1 167 0 383 176 24 0 chr4 10856974 10857059 -173431603 + (TCCA)n Simple_repeat Simple_repeat 4 90 0 209 270 16 0 chr4 10857094 10857157 -173431505 + (TCCA)n Simple_repeat Simple_repeat 2 65 0 318 325 53 18 chr4 10857189 10857303 -173431359 - L2 LINE L2 -22 3250 3133 180 343 0 14 chr4 10857378 10857448 -173431214 - L2 LINE L2 -3 3269 3201 2392 106 0 3 chr4 10857448 10857759 -173430903 - AluSx SINE Alu -2 310 1 231 183 267 0 chr4 10857811 10857871 -173430791 - MIR SINE MIR -62 146 71 189 147 0 0 chr4 10858685 10858719 -173429943 + (GGGAGA)n Simple_repeat Simple_repeat 3 36 0 180 125 0 0 chr4 10858720 10858752 -173429910 + (TG)n Simple_repeat Simple_repeat 1 32 0 266 274 65 40 chr4 10858825 10858949 -173429713 + L2 LINE L2 3187 3313 0 257 196 0 54 chr4 10859091 10859152 -173429510 + polypyrimidine Low_complexity Low_complexity 1 57 0 2326 109 7 0 chr4 10859152 10859456 -173429206 - AluSx SINE Alu -6 306 1 24 0 0 0 chr4 10860095 10860119 -173428543 + AT_rich Low_complexity Low_complexity 1 24 0 2484 83 3 10 chr4 10860265 10860579 -173428083 - AluSx SINE Alu 0 312 1 1912 134 28 3 chr4 10861516 10861823 -173426839 - AluSx SINE Alu 0 314 1 995 74 0 0 chr4 10862009 10862130 -173426532 + AluSc SINE Alu 175 295 -14 274 315 0 0 chr4 10862482 10862555 -173426107 + MIR3 SINE MIR 104 176 -32 253 200 33 33 chr4 10863043 10863103 -173425559 - MIR SINE MIR -67 141 82 1985 144 3 19 chr4 10864966 10865279 -173423383 - AluJb SINE Alu -4 308 1 368 274 96 7 chr4 10866807 10866942 -173421720 - L1MC/D LINE L1 -2211 5597 5451 2348 99 0 3 chr4 10866958 10867261 -173421401 + AluSx SINE Alu 1 302 -10 216 373 27 18 chr4 10867264 10867393 -173421269 - MIR SINE MIR -61 147 20 239 206 14 14 chr4 10867421 10867494 -173421168 + (TA)n Simple_repeat Simple_repeat 1 73 0 4638 67 18 6 chr4 10868178 10868808 -173419854 + L1PA10 LINE L1 5532 6168 0 286 262 49 31 chr4 10868833 10869035 -173419627 - ALR/Alpha Satellite centromeric 0 205 1 208 340 57 0 chr4 10870402 10870508 -173418154 + MIR SINE MIR 33 144 -64 279 310 90 7 chr4 10871018 10871173 -173417489 - L1ME4a LINE L1 -108 6013 5846 405 331 17 29 chr4 10871237 10871412 -173417250 - MIR SINE MIR -4 258 86 25 51 0 0 chr4 10872516 10872555 -173416107 + AT_rich Low_complexity Low_complexity 1 39 0 319 253 50 104 chr4 10872715 10872897 -173415765 - MIR SINE MIR -74 188 17 436 246 90 0 chr4 10872948 10873070 -173415592 - FLAM_A SINE Alu 0 133 1 544 126 39 19 chr4 10873071 10873174 -173415488 + L1M2 LINE L1 5337 5441 -856 2235 89 0 0 chr4 10873287 10873557 -173415105 - AluY SINE Alu -39 272 3 1737 155 73 9 chr4 10873562 10873903 -173414759 + MER4D LTR ERV1 541 903 0 266 224 92 13 chr4 10873903 10873965 -173414697 + MLT1K LTR MaLR 505 572 -16 190 0 0 0 chr4 10875018 10875039 -173413623 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2101 90 11 0 chr4 10875039 10875319 -173413343 - AluSx SINE Alu -29 283 13 197 260 55 14 chr4 10878611 10878684 -173409978 - MIR3 SINE MIR -23 185 110 422 209 228 0 chr4 10878759 10878917 -173409745 + MER96B DNA MER1_type? 224 417 0 2099 112 7 0 chr4 10878991 10879287 -173409375 - AluSx SINE Alu -14 298 1 1656 175 20 3 chr4 10879297 10879594 -173409068 - AluJo SINE Alu -10 302 1 456 153 0 14 chr4 10879621 10879693 -173408969 - FLAM_A SINE Alu -25 117 47 776 199 0 6 chr4 10880132 10880313 -173408349 + CT-rich Low_complexity Low_complexity 1 180 0 1885 251 82 28 chr4 10880470 10881138 -173407524 - L1MC3 LINE L1 -190 7595 6892 210 219 62 0 chr4 10881958 10882022 -173406640 + MIR SINE MIR 65 132 -76 2194 96 6 13 chr4 10882145 10882458 -173406204 - AluSx SINE Alu -1 311 1 1576 194 20 0 chr4 10883231 10883530 -173405132 - AluJo SINE Alu -5 307 3 655 250 66 5 chr4 10883898 10884094 -173404568 - MLT1B LTR MaLR 0 390 183 517 219 52 24 chr4 10884249 10884427 -173404235 - MLT1B LTR MaLR -196 178 1 843 183 0 0 chr4 10885612 10885980 -173402682 + (CTCA)n Simple_repeat Simple_repeat 1 368 0 234 105 0 0 chr4 10886831 10886869 -173401793 + (A)n Simple_repeat Simple_repeat 1 38 0 604 288 59 5 chr4 10888808 10888983 -173399679 + MIR SINE MIR 13 204 -58 2211 80 3 10 chr4 10888983 10889283 -173399379 - AluSx SINE Alu -14 298 1 604 288 59 5 chr4 10889283 10889326 -173399336 + MIR SINE MIR 204 243 -19 256 111 37 74 chr4 10891495 10891603 -173397059 + (TGGG)n Simple_repeat Simple_repeat 3 106 0 338 350 97 14 chr4 10893058 10893275 -173395387 + MIR SINE MIR 16 250 -12 284 207 0 11 chr4 10893289 10893376 -173395286 + (CA)n Simple_repeat Simple_repeat 2 87 0 892 257 20 76 chr4 10893377 10893731 -173394931 + MER2 DNA MER2_type 5 338 -7 394 222 8 8 chr4 10893746 10893863 -173394799 + (CA)n Simple_repeat Simple_repeat 2 118 0 335 309 11 17 chr4 10893945 10894126 -173394536 + (CA)n Simple_repeat Simple_repeat 1 180 0 214 292 115 15 chr4 10895016 10895146 -173393516 + L2 LINE L2 3169 3311 -2 1939 122 0 0 chr4 10895507 10895785 -173392877 - AluSx SINE Alu -17 295 18 987 189 25 5 chr4 10895930 10896131 -173392531 - MER46A DNA MER2_type 0 236 32 284 356 110 0 chr4 10896176 10896322 -173392340 + MIR3 SINE MIR 30 191 -17 1981 99 67 0 chr4 10896711 10896993 -173391669 - AluSq SINE Alu -12 301 1 253 348 22 23 chr4 10897379 10897583 -173391079 - MIR3 SINE MIR -56 206 6 1642 148 25 18 chr4 10898724 10899038 -173389624 + AluJo SINE Alu 1 316 0 521 227 111 29 chr4 10899085 10899257 -173389405 + MIR SINE MIR 74 259 -3 2094 124 3 0 chr4 10900028 10900334 -173388328 - AluSx SINE Alu -5 307 1 262 134 239 15 chr4 10900482 10900549 -173388113 + L2 LINE L2 3232 3313 0 206 351 99 13 chr4 10902710 10902861 -173385801 - MIR3 SINE MIR -6 202 39 1847 145 41 0 chr4 10903727 10904017 -173384645 - AluSx SINE Alu -9 303 2 366 291 114 50 chr4 10904114 10904595 -173384067 - L2 LINE L2 -813 2501 1990 807 185 0 0 chr4 10904599 10904729 -173383933 + FLAM_C SINE Alu 1 130 -3 180 213 43 43 chr4 10904743 10904790 -173383872 - L2 LINE L2 -346 2967 2921 2239 74 0 17 chr4 10904930 10905228 -173383434 - AluSx SINE Alu -19 293 1 39 60 0 0 chr4 10905604 10905671 -173382991 + GC_rich Low_complexity Low_complexity 1 67 0 28 0 0 0 chr4 10905764 10905792 -173382870 + GC_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr4 10906659 10906687 -173381975 + GC_rich Low_complexity Low_complexity 1 28 0 2262 93 0 0 chr4 10907762 10908063 -173380599 + AluSx SINE Alu 1 301 -11 211 281 85 0 chr4 10908112 10908194 -173380468 + MIR3 SINE MIR 113 201 -7 2184 111 0 0 chr4 10908668 10908966 -173379696 + AluY SINE Alu 1 298 -13 860 195 5 56 chr4 10909049 10909244 -173379418 + FRAM SINE Alu 1 176 0 332 231 0 100 chr4 10910217 10910347 -173378315 + MIR SINE MIR 90 205 -57 189 341 121 0 chr4 10910958 10911049 -173377613 - L2 LINE L2 -13 3259 3158 758 232 211 10 chr4 10911573 10911862 -173376800 - MLT1E LTR MaLR 0 593 247 583 118 0 32 chr4 10911956 10912049 -173376613 - AluSg/x SINE Alu -13 297 208 2142 109 0 0 chr4 10912206 10912499 -173376163 - AluSg SINE Alu -9 301 9 2240 71 14 3 chr4 10913090 10913386 -173375276 + AluY SINE Alu 1 299 -12 1449 182 41 10 chr4 10913566 10913857 -173374805 + AluJo SINE Alu 3 302 -10 438 286 26 32 chr4 10913920 10914074 -173374588 - HAL1 LINE L1 -2 2505 2353 1841 145 7 3 chr4 10914197 10914486 -173374176 + AluSx SINE Alu 1 290 -22 334 208 65 0 chr4 10914520 10914597 -173374065 + MER21B LTR ERV1 16 97 -766 1740 233 32 68 chr4 10914603 10915101 -173373561 + MER21B LTR ERV1 19 498 -365 445 261 200 11 chr4 10915101 10915281 -173373381 - MIR SINE MIR -45 217 4 309 248 132 33 chr4 10916295 10916416 -173372246 + MIR SINE MIR 14 146 -116 2305 89 0 0 chr4 10916561 10916863 -173371799 + AluSg SINE Alu 1 302 -8 886 131 0 0 chr4 10917582 10917704 -173370958 - FLAM_C SINE Alu -11 122 1 745 271 114 0 chr4 10917755 10917965 -173370697 - MIR SINE MIR -18 244 11 1851 114 4 0 chr4 10918240 10918511 -173370151 + AluSx SINE Alu 30 301 -11 330 244 167 0 chr4 10919501 10919591 -173369071 + L2 LINE L2 3168 3272 0 358 313 42 14 chr4 10919728 10919872 -173368790 + L2 LINE L2 3125 3272 0 213 152 0 0 chr4 10919876 10919909 -173368753 - L2 LINE L2 -8 3305 3273 196 268 49 37 chr4 10921785 10921867 -173366795 - MIR3 SINE MIR -111 97 15 532 315 82 0 chr4 10923089 10923273 -173365389 + MER58A DNA MER1_type 23 221 -3 2221 132 3 0 chr4 10923913 10924224 -173364438 - AluSx SINE Alu 0 312 1 362 272 26 9 chr4 10924370 10924484 -173364178 - MIR SINE MIR -119 143 28 347 214 71 20 chr4 10925988 10926086 -173362576 + MIR SINE MIR 100 202 -60 630 157 21 0 chr4 10926562 10926702 -173361960 + (TCCA)n Simple_repeat Simple_repeat 3 145 0 2457 81 3 0 chr4 10927231 10927528 -173361134 - AluSx SINE Alu -14 298 1 372 333 154 5 chr4 10927528 10927723 -173360939 - MIR SINE MIR -16 246 23 336 271 201 7 chr4 10927922 10928066 -173360596 - MIR SINE MIR -71 191 20 562 333 131 47 chr4 10928085 10928278 -173360384 - L1MDb LINE L1 -3371 3035 2860 1856 144 23 26 chr4 10928278 10928584 -173360078 - AluSx SINE Alu -7 305 1 562 333 131 47 chr4 10928584 10928969 -173359693 - L1MDb LINE L1 -3546 2860 2408 192 237 34 34 chr4 10929122 10929181 -173359481 - L2 LINE L2 -1 3312 3254 1902 122 56 4 chr4 10929417 10929687 -173358975 - AluSx SINE Alu -24 288 5 207 0 0 0 chr4 10929703 10929726 -173358936 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 194 213 64 0 chr4 10932428 10932475 -173356187 - MIR3 SINE MIR -47 161 112 1969 145 24 0 chr4 10932607 10932903 -173355759 + AluJo SINE Alu 1 303 -9 308 272 144 30 chr4 10932918 10933120 -173355542 + MER102a DNA MER1_type 98 322 -8 5945 0 0 0 chr4 10933304 10933981 -173354681 - L1HS LINE L1 0 6155 5479 2481 12 0 0 chr4 10933976 10934380 -173354282 + L1P1 LINE L1 5086 5489 -666 * 334 252 37 30 chr4 10935078 10935213 -173353449 - MIR3 SINE MIR -43 165 30 755 234 12 0 chr4 10935331 10935498 -173353164 + MER5A DNA MER1_type 3 171 -18 2475 212 70 107 chr4 10935631 10936267 -173352395 - L1MDb LINE L1 -4233 2173 1515 2330 107 0 13 chr4 10936267 10936576 -173352086 - AluSc SINE Alu -4 305 1 2475 212 70 107 chr4 10936576 10937078 -173351584 - L1MDb LINE L1 -4891 1515 1030 2330 92 3 16 chr4 10937078 10937392 -173351270 - AluSp SINE Alu -3 310 1 2475 212 70 107 chr4 10937392 10937752 -173350910 - L1MDb LINE L1 -5376 1030 658 213 225 62 25 chr4 10938189 10938269 -173350393 + MER5B DNA MER1_type 96 178 0 2238 99 27 0 chr4 10938270 10938564 -173350098 - AluSp SINE Alu -11 302 1 392 308 20 41 chr4 10938644 10938790 -173349872 - MIR3 SINE MIR -63 145 3 303 214 80 45 chr4 10939588 10939700 -173348962 - MIR SINE MIR -112 150 35 190 83 139 0 chr4 10939709 10939745 -173348917 - MIR SINE MIR -165 97 57 217 196 22 0 chr4 10941184 10941230 -173347432 + (TA)n Simple_repeat Simple_repeat 2 48 0 330 248 0 99 chr4 10941230 10941331 -173347331 - L1MC4 LINE L1 -1339 6703 6613 340 158 12 12 chr4 10941346 10941428 -173347234 + (CA)n Simple_repeat Simple_repeat 2 83 0 684 201 66 1 chr4 10941584 10941755 -173346907 - L1MD2 LINE L1 0 8042 6255 628 268 128 22 chr4 10941769 10941812 -173346850 - L2 LINE L2 -640 2674 2637 2191 112 10 3 chr4 10941812 10942108 -173346554 - AluSq SINE Alu -13 300 3 628 268 128 22 chr4 10942108 10942377 -173346285 - L2 LINE L2 -677 2637 2329 2153 111 3 49 chr4 10942404 10942728 -173345934 + AluSx SINE Alu 3 311 -1 253 253 325 6 chr4 10943088 10943254 -173345408 - L2 LINE L2 -1015 2299 2081 259 245 138 13 chr4 10943646 10943805 -173344857 - L2 LINE L2 -1370 1944 1766 2202 87 37 10 chr4 10944029 10944328 -173344334 + AluSp SINE Alu 1 307 -6 181 270 72 63 chr4 10944656 10944767 -173343895 - MIR SINE MIR -3 259 148 220 306 162 51 chr4 10944814 10945030 -173343632 - MIR SINE MIR -1 261 22 791 234 57 0 chr4 10945819 10946011 -173342651 - MER58A DNA MER1_type 0 224 22 335 216 62 0 chr4 10946366 10946463 -173342199 + MER5A DNA MER1_type 7 109 -80 2618 53 0 3 chr4 10946584 10946886 -173341776 - AluY SINE Alu -10 301 1 2228 114 0 19 chr4 10948103 10948420 -173340242 - AluSq SINE Alu -2 311 1 207 0 0 0 chr4 10948420 10948443 -173340219 + (T)n Simple_repeat Simple_repeat 1 23 0 2018 229 118 53 chr4 10948854 10950479 -173338183 - L1ME1 LINE L1 -108 6058 4345 304 159 43 0 chr4 10950495 10950564 -173338098 - L1MA10 LINE L1 -7 6327 6256 2095 84 32 21 chr4 10950618 10950902 -173337760 - AluSc SINE Alu -2 307 21 1128 238 165 36 chr4 10950959 10951101 -173337561 - L1ME1 LINE L1 -2273 3873 3751 2245 121 0 3 chr4 10951101 10951406 -173337256 + AluSx SINE Alu 4 307 -5 1128 238 165 36 chr4 10951406 10951784 -173336878 - L1ME1 LINE L1 -2395 3751 3286 2231 119 0 0 chr4 10952063 10952358 -173336304 + AluSx SINE Alu 1 295 -17 267 330 0 29 chr4 10953922 10954025 -173334637 - MIR SINE MIR -82 180 81 261 278 93 117 chr4 10954539 10954982 -173333680 - L2 LINE L2 -4 3268 2837 198 0 0 0 chr4 10956019 10956041 -173332621 + (T)n Simple_repeat Simple_repeat 1 22 0 183 247 186 31 chr4 10956110 10956207 -173332455 - L2 LINE L2 -20 3252 3141 2387 113 0 0 chr4 10956473 10956784 -173331878 + AluSx SINE Alu 1 311 -1 220 229 29 43 chr4 10957585 10957655 -173331007 + MIR SINE MIR 33 101 -107 2415 86 0 7 chr4 10957765 10958066 -173330596 + AluY SINE Alu 1 299 -12 231 114 0 0 chr4 10958109 10958144 -173330518 + (CAA)n Simple_repeat Simple_repeat 1 35 0 3218 166 54 26 chr4 10958200 10958703 -173329959 + MER39 LTR ERV1 1 489 -218 2262 109 7 0 chr4 10958703 10959006 -173329656 + AluSp SINE Alu 1 305 -8 2015 150 0 3 chr4 10959013 10959313 -173329349 + AluJo SINE Alu 1 299 -13 3218 166 54 26 chr4 10959313 10959489 -173329173 + MER39 LTR ERV1 494 707 0 1501 200 67 9 chr4 10959549 10959879 -173328783 + MLT1B LTR MaLR 1 349 -41 207 188 0 0 chr4 10960593 10960641 -173328021 + (TA)n Simple_repeat Simple_repeat 1 48 0 237 33 0 0 chr4 10960782 10960812 -173327850 + (CA)n Simple_repeat Simple_repeat 1 30 0 198 0 0 0 chr4 10960815 10960837 -173327825 + (TC)n Simple_repeat Simple_repeat 1 22 0 2303 75 7 0 chr4 10961514 10961830 -173326832 + AluSg SINE Alu 1 318 0 1370 187 133 3 chr4 10962830 10963162 -173325500 + MLT1B LTR MaLR 5 379 -11 465 66 0 0 chr4 10963499 10963560 -173325102 + (TCC)n Simple_repeat Simple_repeat 2 62 0 359 244 27 54 chr4 10964589 10964740 -173323922 - MIR SINE MIR -44 164 10 345 313 62 35 chr4 10965188 10965415 -173323247 + L2 LINE L2 3034 3266 -6 3033 126 43 32 chr4 10965535 10965874 -173322788 + MER4B LTR ERV1 1 335 -444 2121 134 3 0 chr4 10965874 10966173 -173322489 - AluSx SINE Alu -12 300 1 3033 126 43 32 chr4 10966173 10966432 -173322230 + MER4B LTR ERV1 335 779 0 3452 125 81 23 chr4 10967380 10967412 -173321250 + LTR9B LTR ERV1 1 30 -614 2296 95 0 52 chr4 10967412 10967738 -173320924 + AluSc SINE Alu 1 309 0 3452 125 81 23 chr4 10967738 10968314 -173320348 + LTR9B LTR ERV1 30 644 0 448 113 0 38 chr4 10969216 10969296 -173319366 + MER4A LTR ERV1 22 98 -566 1697 117 3 80 chr4 10969296 10969656 -173319006 + MER4A LTR ERV1 261 664 0 1206 237 118 9 chr4 10969795 10970133 -173318529 + MSTD LTR MaLR 14 388 -8 250 313 111 55 chr4 10970521 10970738 -173317924 - L2 LINE L2 -24 3248 3020 250 325 82 72 chr4 10971144 10971338 -173317324 + MIR SINE MIR 65 260 -2 234 295 93 43 chr4 10971653 10971792 -173316870 + L2 LINE L2 3126 3271 -1 23 0 0 0 chr4 10971936 10971959 -173316703 + AT_rich Low_complexity Low_complexity 1 23 0 1072 137 0 0 chr4 10971976 10972129 -173316533 + AluSq SINE Alu 1 153 -160 1992 144 43 0 chr4 10972322 10972621 -173316041 - AluSx SINE Alu 0 312 1 274 306 158 20 chr4 10972700 10972896 -173315766 - L1ME LINE L1 -477 5644 5422 867 212 100 111 chr4 10973898 10974350 -173314312 + MER31B LTR ERV1 20 466 0 1708 218 48 88 chr4 10974442 10974854 -173313808 + MER34C LTR ERV1 1 381 -204 2170 103 0 31 chr4 10974854 10975173 -173313489 + AluSx SINE Alu 1 309 -3 1708 218 48 88 chr4 10975173 10975370 -173313292 + MER34C LTR ERV1 381 585 0 239 193 18 35 chr4 10976623 10976680 -173311982 + G-rich Low_complexity Low_complexity 1 56 0 245 301 155 29 chr4 10977290 10977529 -173311133 + L2 LINE L2 2913 3181 -91 2327 60 3 17 chr4 10977672 10977974 -173310688 - AluY SINE Alu -13 298 1 2265 82 0 7 chr4 10978308 10978600 -173310062 - AluSc SINE Alu -19 290 1 545 270 103 0 chr4 10978678 10978863 -173309799 - MIR SINE MIR -50 212 9 1041 222 31 38 chr4 10979098 10979490 -173309172 + LTR10B LTR ERV1 214 505 0 1285 194 150 19 chr4 10979490 10979851 -173308811 + MSTC LTR MaLR 21 428 0 494 274 203 0 chr4 10979875 10980141 -173308521 + L1ME3A LINE L1 5841 6160 -10 300 167 0 0 chr4 10980145 10980193 -173308469 + L1MB5 LINE L1 5004 5051 -1095 1693 176 0 7 chr4 10980203 10980487 -173308175 + AluJo SINE Alu 1 282 -30 1436 209 20 22 chr4 10980500 10980858 -173307804 + L1MB5 LINE L1 5315 5671 -509 2038 139 17 0 chr4 10980877 10981179 -173307483 + AluSx SINE Alu 1 307 -5 331 208 0 0 chr4 10981185 10981257 -173307405 + G-rich Low_complexity Low_complexity 3 74 0 747 101 0 0 chr4 10981265 10981364 -173307298 + AluY SINE Alu 10 108 -203 926 66 0 0 chr4 10981466 10981588 -173307074 + AluY SINE Alu 173 294 -17 771 112 0 0 chr4 10981588 10981704 -173306958 + (GGAA)n Simple_repeat Simple_repeat 3 118 0 2023 209 48 6 chr4 10981710 10982193 -173306469 + L1MB5 LINE L1 5672 6174 0 569 329 42 19 chr4 10982207 10982423 -173306239 - MIR SINE MIR -3 259 39 180 317 79 10 chr4 10983017 10983118 -173305544 + MIR SINE MIR 42 149 -59 222 205 26 13 chr4 10984820 10984976 -173303686 + (TG)n Simple_repeat Simple_repeat 2 159 0 420 237 28 11 chr4 10985050 10985227 -173303435 + (TG)n Simple_repeat Simple_repeat 1 180 0 406 203 10 29 chr4 10985280 10985597 -173303065 + (TG)n Simple_repeat Simple_repeat 1 311 0 201 348 22 0 chr4 10986009 10986101 -173302561 + GA-rich Low_complexity Low_complexity 2 95 0 328 287 22 52 chr4 10988992 10989075 -173299587 + L1MC/D LINE L1 5303 5382 -2426 2172 135 3 0 chr4 10989075 10989387 -173299275 + AluSq SINE Alu 1 313 0 328 287 22 52 chr4 10989387 10989439 -173299223 + L1MC/D LINE L1 5382 5434 -2374 1201 203 13 4 chr4 10989442 10989674 -173298988 + AluJo SINE Alu 2 235 -77 1401 88 0 0 chr4 10989778 10989959 -173298703 + AluSg/x SINE Alu 128 308 -2 463 222 153 11 chr4 10989962 10990151 -173298511 + LTR48B LTR ERV1 429 644 0 1993 83 0 76 chr4 10990654 10990979 -173297683 + AluSc SINE Alu 1 302 0 187 319 43 29 chr4 10991599 10991668 -173296994 - L3b LINE CR1 -51 1532 1463 454 255 50 37 chr4 10991676 10991837 -173296825 + MIR SINE MIR 21 183 -79 1760 220 69 21 chr4 10991840 10992263 -173296399 + LTR47B LTR ERVL 1 443 0 1876 143 6 13 chr4 10992538 10992852 -173295810 + AluSx SINE Alu 1 312 0 2107 129 0 3 chr4 10993000 10993303 -173295359 + AluSq SINE Alu 1 302 -11 2521 62 0 0 chr4 10993303 10993608 -173295054 + AluY SINE Alu 1 305 -6 191 344 32 0 chr4 10994126 10994219 -173294443 + L3 LINE CR1 1131 1226 -351 354 288 104 8 chr4 10994297 10994422 -173294240 + MLT1I LTR MaLR 68 204 -205 192 253 172 11 chr4 10994691 10994778 -173293884 + L2 LINE L2 3168 3268 -4 634 257 183 0 chr4 10994892 10995067 -173293595 - MER3 DNA MER1_type 0 209 3 2028 110 13 7 chr4 10995256 10995566 -173293096 + AluSx SINE Alu 1 312 0 340 338 32 32 chr4 10995815 10996031 -173292631 + L2 LINE L2 2841 3056 -257 298 286 80 9 chr4 10998298 10998410 -173290252 - MIR SINE MIR -55 153 34 201 325 36 0 chr4 10998802 10998885 -173289777 + MIR SINE MIR 98 183 -79 2053 241 13 53 chr4 10999297 10999903 -173288759 + L1MB5 LINE L1 5557 6138 -36 2098 109 31 0 chr4 10999907 11000201 -173288461 + AluSx SINE Alu 1 303 -9 1875 148 0 4 chr4 11000224 11000522 -173288140 + AluJb SINE Alu 5 301 0 351 0 0 0 chr4 11000779 11000818 -173287844 + (CA)n Simple_repeat Simple_repeat 2 40 0 423 237 0 0 chr4 11002546 11002639 -173286023 - MIR SINE MIR -133 129 37 250 335 150 21 chr4 11003376 11003609 -173285053 + L2 LINE L2 2968 3230 -42 333 0 0 0 chr4 11004124 11004161 -173284501 + (TG)n Simple_repeat Simple_repeat 2 38 0 339 317 55 23 chr4 11004161 11004277 -173284385 - L2 LINE L2 -285 2987 2876 2088 133 26 0 chr4 11004277 11004579 -173284083 + AluSg SINE Alu 1 310 0 339 317 55 23 chr4 11004579 11004681 -173283981 - L2 LINE L2 -396 2876 2755 1432 233 36 3 chr4 11004857 11005192 -173283470 + MLT2C1 LTR ERVL 1 346 -51 909 174 0 0 chr4 11005222 11005462 -173283200 + (TCCA)n Simple_repeat Simple_repeat 1 240 0 260 286 12 0 chr4 11006832 11006916 -173281746 - L1ME3A LINE L1 -70 6100 6016 189 264 18 73 chr4 11007107 11007217 -173281445 - L2 LINE L2 -220 3052 2949 247 294 39 59 chr4 11007555 11007657 -173281005 - MIR SINE MIR -71 191 92 533 170 18 0 chr4 11008331 11008444 -173280218 + MIR SINE MIR 37 157 -61 696 250 58 10 chr4 11009230 11009438 -173279224 - L1MD2 LINE L1 -4 6355 6138 186 133 0 0 chr4 11009438 11009468 -173279194 + (CGTG)n Simple_repeat Simple_repeat 3 32 0 446 271 7 0 chr4 11011606 11011750 -173276912 + (TG)n Simple_repeat Simple_repeat 2 146 0 255 369 87 0 chr4 11011906 11012101 -173276561 + MIR SINE MIR 20 231 -31 189 0 0 0 chr4 11012427 11012448 -173276214 + (TGAA)n Simple_repeat Simple_repeat 2 22 0 698 204 115 5 chr4 11012627 11012818 -173275844 + MER20 DNA MER1_type 1 212 -7 264 220 110 0 chr4 11012890 11012981 -173275681 + MIR SINE MIR 21 121 -141 2044 122 24 0 chr4 11016035 11016330 -173272332 - AluSx SINE Alu -10 302 1 349 288 176 7 chr4 11018118 11018271 -173270391 + MIR SINE MIR 58 236 -26 459 286 51 60 chr4 11018378 11018612 -173270050 - MIR SINE MIR -17 245 14 742 172 7 7 chr4 11018678 11018829 -173269833 - MER96B DNA MER1_type? -238 179 29 2194 122 7 0 chr4 11019138 11019441 -173269221 + AluSx SINE Alu 1 305 -7 212 167 0 0 chr4 11019509 11019545 -173269117 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 267 304 76 0 chr4 11019981 11020073 -173268589 + MIR SINE MIR 77 175 -87 1544 285 35 59 chr4 11020195 11020956 -173267706 - L1ME1 LINE L1 -67 6099 5357 308 224 35 35 chr4 11020962 11021047 -173267615 + L1MCa LINE L1 1980 2064 -4362 370 253 70 58 chr4 11021061 11021302 -173267360 + L1MCa LINE L1 1907 2132 -4294 299 144 65 0 chr4 11021315 11021468 -173267194 + (TA)n Simple_repeat Simple_repeat 1 163 0 390 129 31 37 chr4 11021483 11021646 -173267016 + (TATAA)n Simple_repeat Simple_repeat 3 164 0 217 64 85 0 chr4 11021648 11021695 -173266967 + (TA)n Simple_repeat Simple_repeat 1 51 0 2249 118 0 0 chr4 11021695 11021983 -173266679 - AluSx SINE Alu -24 288 1 341 207 21 129 chr4 11021983 11022008 -173266654 - L1ME1 LINE L1 -776 5370 5344 742 227 72 139 chr4 11022008 11022506 -173266156 + MER4C LTR ERV1 1 465 0 341 207 21 129 chr4 11022506 11022533 -173266129 - L1ME1 LINE L1 -802 5344 5316 2260 100 0 17 chr4 11022533 11022834 -173265828 - AluSx SINE Alu -16 296 1 341 207 21 129 chr4 11022834 11022920 -173265742 - L1ME1 LINE L1 -830 5316 5246 351 293 20 0 chr4 11023014 11023152 -173265510 - L1MEc LINE L1 -4501 1739 1573 * 601 191 112 7 chr4 11023134 11023286 -173265376 - L1MB8 LINE L1 0 6178 6011 * 1359 288 95 7 chr4 11023284 11023986 -173264676 - L1MEc LINE L1 -4754 1642 879 1920 194 61 27 chr4 11023988 11024432 -173264230 - LTR2B LTR ERV1 0 490 32 338 115 0 16 chr4 11024508 11024569 -173264093 + MADE1 DNA Mariner 21 80 0 252 56 0 28 chr4 11024582 11024618 -173264044 + (TCCC)n Simple_repeat Simple_repeat 2 36 0 1953 178 10 0 chr4 11024618 11025089 -173263573 - AluJo SINE Alu 0 474 1 502 288 93 91 chr4 11025096 11025251 -173263411 - L1MEc LINE L1 -5578 818 665 726 154 8 0 chr4 11025251 11025368 -173263294 - FLAM_C SINE Alu -15 118 1 502 288 93 91 chr4 11025368 11025972 -173262690 - L1MEc LINE L1 -5731 665 57 188 139 0 47 chr4 11026690 11026733 -173261929 + (GGGA)n Simple_repeat Simple_repeat 1 41 0 208 300 71 0 chr4 11027374 11027444 -173261218 - L2 LINE L2 -25 3288 3214 694 236 16 6 chr4 11027966 11028148 -173260514 - Charlie2 DNA MER1_type -38 2824 2641 213 278 48 2 chr4 11078877 11078940 -173209722 - MIR SINE MIR -110 98 37 182 214 0 24 chr4 11079150 11079192 -173209470 - MIR SINE MIR -111 151 111 1606 144 90 7 chr4 11079411 11079689 -173208973 + AluJo SINE Alu 2 302 -10 805 261 105 30 chr4 11079755 11080197 -173208465 + MLT1C LTR MaLR 1 498 -7 192 163 0 0 chr4 11080283 11080326 -173208336 + (TG)n Simple_repeat Simple_repeat 2 44 0 2052 125 0 0 chr4 11080495 11080783 -173207879 + AluSg1 SINE Alu 1 288 -21 1640 250 77 30 chr4 11080865 11081569 -173207093 + L1MD2 LINE L1 5543 6228 -14 509 274 126 0 chr4 11081588 11081803 -173206859 - LTR33A LTR ERVL -22 501 260 1785 104 75 35 chr4 11081805 11082150 -173206512 - THE1B LTR MaLR 0 364 6 782 304 28 30 chr4 11083347 11083709 -173204953 + ERVL LTR ERVL 4873 5233 -531 194 214 0 0 chr4 11083939 11083981 -173204681 - L2 LINE L2 -1 3312 3271 873 225 149 0 chr4 11084266 11084595 -173204067 + MLT1D LTR MaLR 3 380 -125 395 321 35 12 chr4 11085047 11085210 -173203452 - MIR SINE MIR -55 153 38 878 266 61 30 chr4 11085812 11086285 -173202377 - MLT1D LTR MaLR -17 488 1 347 320 23 0 chr4 11086432 11086560 -173202102 + L1ME LINE L1 5522 5652 -469 201 121 0 0 chr4 11087886 11087919 -173200743 + (A)n Simple_repeat Simple_repeat 1 33 0 448 250 0 10 chr4 11088002 11088106 -173200556 - MIR3 SINE MIR -46 162 60 236 307 130 12 chr4 11088395 11088556 -173200106 - MIR SINE MIR -44 218 33 521 198 173 12 chr4 11088661 11088823 -173199839 - MLT1F LTR MaLR -42 500 313 300 277 8 59 chr4 11088827 11088946 -173199716 - MIR SINE MIR -117 145 33 267 291 119 15 chr4 11089082 11089216 -173199446 - MIR3 SINE MIR -51 157 10 194 371 62 21 chr4 11089349 11089543 -173199119 + MIR SINE MIR 8 209 -53 357 316 59 33 chr4 11090318 11090470 -173198192 - L1ME4a LINE L1 -2 6119 5964 2295 100 0 3 chr4 11091259 11091568 -173197094 - AluSc SINE Alu -1 308 1 1931 145 27 0 chr4 11091632 11091929 -173196733 - AluJo SINE Alu -7 305 1 329 172 31 0 chr4 11092799 11092863 -173195799 + MIR SINE MIR 82 147 -61 361 346 31 31 chr4 11093354 11093513 -173195149 + MIR SINE MIR 20 178 -84 243 271 19 37 chr4 11094503 11094610 -173194052 - LTR16C LTR ERVL -41 450 346 206 361 81 68 chr4 11095066 11095387 -173193275 - L2 LINE L2 0 3272 2948 190 297 25 59 chr4 11097006 11097124 -173191538 - L2 LINE L2 -13 3259 3146 591 280 101 49 chr4 11097287 11097712 -173190950 - MLT1L LTR MaLR -27 588 142 239 194 15 60 chr4 11097892 11097959 -173190703 + MIR SINE MIR 46 109 -153 1039 253 210 16 chr4 11097978 11098628 -173190034 - L2 LINE L2 -6 3307 2507 2246 107 3 0 chr4 11099758 11100067 -173188595 - AluSp SINE Alu -3 310 1 695 269 18 6 chr4 11100068 11100239 -173188423 - MIR SINE MIR -66 196 24 426 327 40 10 chr4 11100242 11100441 -173188221 - L1ME LINE L1 -383 5738 5534 2398 87 0 0 chr4 11100657 11100968 -173187694 - AluY SINE Alu 0 311 1 275 321 80 18 chr4 11102009 11102283 -173186379 + L1M4 LINE L1 4112 4402 -1744 1218 25 25 0 chr4 11102296 11102454 -173186208 + MLT2A1 LTR ERVL 1 162 -282 479 335 60 20 chr4 11102456 11102550 -173186112 + L1M4 LINE L1 4966 5055 -1091 2302 103 3 0 chr4 11102550 11102860 -173185802 + AluSx SINE Alu 1 311 -1 479 335 60 20 chr4 11102860 11103016 -173185646 + L1M4 LINE L1 5055 5226 -920 1256 241 117 57 chr4 11103090 11103129 -173185533 - MLT2B1 LTR ERVL -1 519 484 315 0 0 0 chr4 11103129 11103164 -173185498 + (TA)n Simple_repeat Simple_repeat 2 36 0 * 369 43 0 0 chr4 11103163 11103210 -173185452 + (CA)n Simple_repeat Simple_repeat 2 48 0 1256 241 117 57 chr4 11103164 11103659 -173185003 - MLT2B1 LTR ERVL -36 484 2 751 225 113 0 chr4 11103910 11104132 -173184530 - Tigger3(Golem) DNA MER2_type -15 3014 2768 287 353 79 0 chr4 11104248 11104387 -173184275 + MIR SINE MIR 58 207 -55 762 144 0 0 chr4 11104423 11104541 -173184121 - FLAM_A SINE Alu 0 142 25 248 340 131 34 chr4 11104661 11104929 -173183733 + L2 LINE L2 2978 3271 -1 360 272 144 6 chr4 11105835 11106015 -173182647 - MLT1D LTR MaLR 0 505 301 345 265 0 20 chr4 11106079 11106177 -173182485 - MLT1D LTR MaLR -309 196 101 340 246 24 0 chr4 11106915 11107041 -173181621 + CT-rich Low_complexity Low_complexity 4 132 0 2556 42 0 3 chr4 11107555 11107864 -173180798 - AluY SINE Alu -3 308 1 244 99 70 0 chr4 11107931 11108002 -173180660 + (TG)n Simple_repeat Simple_repeat 1 76 0 602 213 20 16 chr4 11108153 11108316 -173180346 - MLT1A1 LTR MaLR 0 396 205 1548 179 4 4 chr4 11108629 11108886 -173179776 - AluJo SINE Alu -55 257 1 269 208 13 52 chr4 11109055 11109110 -173179552 + MIR SINE MIR 70 123 -85 2153 104 20 0 chr4 11109110 11109407 -173179255 - AluSx SINE Alu -9 303 1 269 208 13 52 chr4 11109407 11109428 -173179234 + MIR SINE MIR 123 143 -65 2449 57 0 7 chr4 11110360 11110660 -173178002 - AluY SINE Alu -13 298 1 1960 129 7 0 chr4 11110892 11111203 -173177459 - AluSx SINE Alu 0 313 1 1970 219 65 10 chr4 11112646 11113125 -173175537 + MLT1D LTR MaLR 1 505 0 1341 273 155 0 chr4 11113333 11113817 -173174845 + MER89 LTR ERV1 1 559 0 304 306 124 35 chr4 11113839 11114185 -173174477 - LTR16C LTR ERVL 0 491 115 2070 219 104 2 chr4 11116060 11116608 -173172054 + L1MC2 LINE L1 5741 6344 0 2180 115 3 13 chr4 11116613 11116927 -173171735 + AluSx SINE Alu 1 311 -1 261 293 48 34 chr4 11117239 11117386 -173171276 + MIR3 SINE MIR 29 177 -31 207 279 16 0 chr4 11117612 11117673 -173170989 - L2 LINE L2 -44 3228 3167 2051 134 0 0 chr4 11118065 11118363 -173170299 - AluJb SINE Alu -14 298 1 195 271 34 17 chr4 11118923 11118982 -173169680 - L2 LINE L2 -217 3055 2996 1618 290 44 39 chr4 11120615 11121205 -173167457 + MLT1G1 LTR MaLR 1 593 -2 468 250 96 0 chr4 11122121 11122257 -173166405 - MIR SINE MIR -77 185 37 185 260 82 14 chr4 11123922 11123995 -173164667 + MIR SINE MIR 39 116 -92 2204 118 0 0 chr4 11124286 11124592 -173164070 - AluSg SINE Alu -2 308 3 201 39 0 0 chr4 11124699 11124725 -173163937 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 854 276 60 31 chr4 11125202 11125648 -173163014 + MLT1C LTR MaLR 4 462 -5 1255 251 20 20 chr4 11125657 11126015 -173162647 - MER47A DNA MER2_type -6 360 3 186 333 67 0 chr4 11126509 11126599 -173162063 - MIR SINE MIR -83 125 30 1495 237 84 3 chr4 11127304 11127650 -173161012 - MLT1A2 LTR MaLR 0 374 1 1158 104 50 50 chr4 11128403 11128605 -173160057 + AluJb SINE Alu 111 312 0 1027 244 52 0 chr4 11128660 11128930 -173159732 - Charlie1b DNA MER1_type -239 284 1 432 37 0 0 chr4 11129333 11129387 -173159275 + (TG)n Simple_repeat Simple_repeat 2 55 0 2361 88 0 0 chr4 11129639 11129936 -173158726 + AluSx SINE Alu 1 297 -15 294 328 74 28 chr4 11129938 11130180 -173158482 - MIR SINE MIR -3 259 1 299 310 106 0 chr4 11130435 11130548 -173158114 - MIR SINE MIR -116 146 22 461 266 113 62 chr4 11131381 11131656 -173157006 - L2 LINE L2 -87 3185 2897 191 324 14 28 chr4 11131717 11131788 -173156874 + L2 LINE L2 3223 3292 -21 787 163 0 0 chr4 11133456 11133579 -173155083 + FLAM_C SINE Alu 15 137 -6 241 330 20 20 chr4 11133914 11134027 -173154635 - MIR SINE MIR -85 123 12 6594 90 22 0 chr4 11134848 11135836 -173152826 - L1PA10 LINE L1 0 6168 5175 300 91 0 0 chr4 11135845 11135889 -173152773 + (TTCCC)n Simple_repeat Simple_repeat 1 44 0 3085 128 21 2 chr4 11135889 11135901 -173152761 - L1PA10 LINE L1 -941 5205 5195 2110 129 3 3 chr4 11135901 11136210 -173152452 - AluSq SINE Alu -4 309 1 3085 128 21 2 chr4 11136210 11136769 -173151893 - L1PA10 LINE L1 -951 5195 4623 3186 203 17 16 chr4 11136770 11137405 -173151257 - L1MB3 LINE L1 -2 6181 5546 248 313 24 36 chr4 11137502 11137668 -173150994 + L2 LINE L2 2823 2986 -286 1139 197 171 13 chr4 11137940 11138255 -173150407 - MLT1A1 LTR MaLR 0 365 1 1624 241 75 13 chr4 11138658 11139123 -173149539 - L1MB3 LINE L1 0 6183 5690 247 291 8 103 chr4 11139197 11139314 -173149348 - MIR SINE MIR -34 228 123 2001 189 19 3 chr4 11139411 11139770 -173148892 - MLT1A1 LTR MaLR 0 365 1 529 283 33 69 chr4 11139878 11140154 -173148508 - L1MC4 LINE L1 -369 7673 7408 246 357 179 17 chr4 11140215 11140562 -173148100 - L1MB3 LINE L1 -2109 5699 5297 832 251 164 13 chr4 11141810 11142209 -173146453 + MLT1C LTR MaLR 2 619 -7 439 314 73 5 chr4 11142241 11142432 -173146230 - MIR SINE MIR -12 250 47 315 251 96 36 chr4 11143704 11143871 -173144791 - MER112 DNA MER1_type -11 249 73 652 205 33 60 chr4 11143890 11144105 -173144557 + MLT1D LTR MaLR 1 209 -296 394 269 52 0 chr4 11144220 11144354 -173144308 + MLT1D LTR MaLR 279 419 -86 322 287 36 48 chr4 11144364 11144531 -173144131 + L2 LINE L2 2950 3114 -158 211 286 0 77 chr4 11145250 11145341 -173143321 + MIR3 SINE MIR 110 193 -15 485 256 8 0 chr4 11145629 11145746 -173142916 - MER3 DNA MER1_type -10 199 82 1218 227 30 15 chr4 11146132 11146467 -173142195 - MLT1A1 LTR MaLR -25 340 1 241 200 18 0 chr4 11146613 11146668 -173141994 - MER3 DNA MER1_type -55 154 99 812 258 82 25 chr4 11146799 11147164 -173141498 + MLT1C LTR MaLR 61 446 -21 216 293 65 32 chr4 11147821 11147944 -173140718 - MIR SINE MIR -62 146 20 423 216 18 117 chr4 11147972 11148040 -173140622 + MER20 DNA MER1_type 3 76 -143 1835 157 10 7 chr4 11148040 11148340 -173140322 - AluJo SINE Alu -11 301 1 423 216 18 117 chr4 11148340 11148442 -173140220 + MER20 DNA MER1_type 76 156 -63 274 276 0 23 chr4 11148629 11148716 -173139946 + G-rich Low_complexity Low_complexity 3 87 0 2979 255 60 6 chr4 11149771 11150871 -173137791 + L1MB8 LINE L1 5014 6171 -7 252 363 11 0 chr4 11151722 11151813 -173136849 + MIR SINE MIR 46 137 -125 2489 65 0 0 chr4 11152719 11153025 -173135637 - AluY SINE Alu -5 306 1 2380 94 0 0 chr4 11153035 11153343 -173135319 - AluSc SINE Alu -1 308 1 306 279 23 62 chr4 11153452 11153538 -173135124 + L2 LINE L2 3190 3271 -42 2372 144 22 0 chr4 11153538 11153893 -173134769 - THE1B LTR MaLR -1 363 1 306 279 23 62 chr4 11153893 11153935 -173134727 + L2 LINE L2 3271 3313 0 382 356 12 12 chr4 11154115 11154275 -173134387 + MIR3 SINE MIR 38 197 -11 1493 151 29 210 chr4 11154332 11154808 -173133854 + MLT1B LTR MaLR 1 390 0 210 353 86 0 chr4 11154869 11154985 -173133677 - MIR3 SINE MIR -77 131 6 192 282 186 16 chr4 11156505 11156629 -173132033 + MIR SINE MIR 20 164 -98 218 253 12 49 chr4 11157519 11157681 -173130981 + C-rich Low_complexity Low_complexity 4 159 0 224 294 54 87 chr4 11157958 11158142 -173130520 - MIR3 SINE MIR -24 184 7 342 303 64 0 chr4 11158856 11158965 -173129697 + L2 LINE L2 3156 3271 -1 437 259 95 19 chr4 11159315 11159473 -173129189 - MIR3 SINE MIR -27 181 12 275 267 70 12 chr4 11159552 11159638 -173129024 + MIR SINE MIR 83 173 -89 1864 159 21 0 chr4 11159852 11160142 -173128520 + AluJb SINE Alu 1 296 -16 2379 78 3 0 chr4 11161166 11161474 -173127188 + AluSg SINE Alu 1 309 -1 269 328 94 8 chr4 11162145 11162273 -173126389 - MIR SINE MIR -104 158 20 615 240 67 49 chr4 11163749 11163974 -173124688 - MLT1C LTR MaLR -233 234 6 863 157 167 0 chr4 11164722 11164926 -173123736 + MLT2C1 LTR ERVL 113 350 -47 769 188 22 3 chr4 11164972 11165755 -173122907 + (TCCA)n Simple_repeat Simple_repeat 1 798 0 417 307 17 82 chr4 11166168 11166399 -173122263 + L2 LINE L2 2951 3166 -106 312 316 127 17 chr4 11167733 11168082 -173120580 + MLT1K LTR MaLR 189 566 -22 2260 101 0 0 chr4 11169729 11170026 -173118636 - AluSx SINE Alu -15 297 1 246 254 0 39 chr4 11170487 11170584 -173118078 + GA-rich Low_complexity Low_complexity 1 143 0 253 316 22 15 chr4 11170659 11170795 -173117867 - MER105 DNA DNA -67 137 1 2303 65 7 3 chr4 11171605 11171898 -173116764 + AluY SINE Alu 1 294 -17 1863 114 0 4 chr4 11171907 11172170 -173116492 + AluY SINE Alu 42 303 -8 302 331 44 37 chr4 11172174 11172310 -173116352 + L1ME1 LINE L1 6028 6164 -2 220 372 58 17 chr4 11172338 11172510 -173116152 - MIR SINE MIR -38 224 46 307 326 54 0 chr4 11172754 11172883 -173115779 + MIR3 SINE MIR 13 148 -60 1831 103 0 8 chr4 11172887 11173139 -173115523 + AluSc SINE Alu 1 250 -59 291 214 0 0 chr4 11173139 11173195 -173115467 - MLT1C LTR MaLR -411 56 1 210 214 18 18 chr4 11174096 11174152 -173114510 + (TTCA)n Simple_repeat Simple_repeat 2 57 0 460 333 64 23 chr4 11174983 11175202 -173113460 - MIR SINE MIR -29 233 6 1040 264 65 9 chr4 11176306 11176643 -173112019 - MER70B LTR ERVL -202 376 21 247 288 38 0 chr4 11176997 11177077 -173111585 - MLT1L LTR MaLR -532 83 1 533 301 121 39 chr4 11177825 11177980 -173110682 + L1ME4a LINE L1 4019 4160 -1986 2896 88 5 0 chr4 11177980 11178353 -173110309 - THE1C LTR MaLR 0 375 1 533 301 121 39 chr4 11178353 11178552 -173110110 + L1ME4a LINE L1 4160 4402 -1744 363 354 80 64 chr4 11178882 11179420 -173109242 + L1ME4a LINE L1 4954 5506 -747 280 313 104 9 chr4 11179473 11179588 -173109074 - MIR SINE MIR -13 249 124 346 323 60 8 chr4 11180782 11180915 -173107747 + L1ME4a LINE L1 5978 6117 -4 3529 123 13 11 chr4 11181216 11181832 -173106830 + MER4D LTR ERV1 1 617 -255 4391 68 13 0 chr4 11181832 11182379 -173106283 + MER41A LTR ERV1 1 554 0 3875 112 16 26 chr4 11182551 11183175 -173105487 + MER41A-int LTR ERV1 1 618 -5328 * 11299 123 43 27 chr4 11183161 11183837 -173104825 + MER41A-int LTR ERV1 1079 1743 -4203 2294 98 0 3 chr4 11183837 11184144 -173104518 - AluY SINE Alu -5 306 1 11299 123 43 27 chr4 11184144 11184514 -173104148 + MER41A-int LTR ERV1 1743 2106 -3840 2395 73 0 10 chr4 11184514 11184828 -173103834 + AluY SINE Alu 1 311 0 11299 123 43 27 chr4 11184828 11186952 -173101710 + MER41A-int LTR ERV1 2106 5944 -2 4286 70 20 0 chr4 11186952 11187495 -173101167 + MER41A LTR ERV1 1 554 0 1273 163 53 0 chr4 11187495 11187741 -173100921 + MER4D LTR ERV1 645 903 0 250 376 58 0 chr4 11188879 11189068 -173099594 + MIR SINE MIR 49 248 -14 2166 107 0 10 chr4 11190570 11190868 -173097794 + AluSp SINE Alu 1 295 -18 1735 155 0 68 chr4 11191060 11191382 -173097280 + AluJb SINE Alu 1 300 -12 741 157 8 6 chr4 11192103 11192352 -173096310 - AluJb SINE Alu -14 298 1 199 274 164 0 chr4 11192765 11192838 -173095824 + MIR SINE MIR 53 137 -125 325 282 92 14 chr4 11193489 11193631 -173095031 - L2 LINE L2 -271 3001 2849 418 254 40 0 chr4 11195184 11195310 -173093352 - MER58B DNA MER1_type -7 334 204 1886 135 10 17 chr4 11195481 11195770 -173092892 - AluJo SINE Alu -23 289 3 292 279 54 8 chr4 11197794 11197923 -173090739 + MER106A DNA MER1_type 102 236 0 244 288 12 0 chr4 11197926 11198006 -173090656 + L2 LINE L2 2987 3067 -205 2634 188 9 11 chr4 11199030 11199573 -173089089 - L1PA16 LINE L1 -156 6010 5469 24 0 0 0 chr4 11199712 11199736 -173088926 + AT_rich Low_complexity Low_complexity 1 24 0 245 286 114 9 chr4 11201620 11201725 -173086937 + MIR SINE MIR 28 143 -119 943 173 0 0 chr4 11203163 11203313 -173085349 - AluJb SINE Alu -15 297 148 2093 132 0 0 chr4 11203560 11203863 -173084799 - AluY SINE Alu -8 303 1 243 307 97 29 chr4 11204615 11204801 -173083861 - MIR SINE MIR -30 232 33 259 288 159 18 chr4 11205058 11205227 -173083435 - MIR SINE MIR -38 224 34 2605 30 3 0 chr4 11206086 11206391 -173082271 + AluY SINE Alu 2 307 -4 350 235 65 53 chr4 11206701 11206871 -173081791 + MLT1D LTR MaLR 42 213 -292 193 273 61 0 chr4 11208460 11208526 -173080136 - MIR3 SINE MIR -54 154 85 360 179 0 95 chr4 11208591 11208770 -173079892 + (CACCT)n Simple_repeat Simple_repeat 2 163 0 2424 70 0 0 chr4 11209659 11209961 -173078701 + AluY SINE Alu 1 302 -9 668 313 25 0 chr4 11210534 11210735 -173077927 - MIR SINE MIR -19 243 38 228 291 64 36 chr4 11211663 11211773 -173076889 + L2 LINE L2 3173 3285 -28 2119 116 7 0 chr4 11213197 11213499 -173075163 + AluSx SINE Alu 1 304 -8 1275 162 4 26 chr4 11213500 11213729 -173074933 + AluJo SINE Alu 71 294 -18 188 352 56 40 chr4 11214119 11214244 -173074418 - L3 LINE CR1 -572 1005 879 651 26 0 0 chr4 11214373 11214450 -173074212 + (TATATG)n Simple_repeat Simple_repeat 1 77 0 847 265 56 8 chr4 11214969 11215203 -173073459 - MIR SINE MIR -3 259 15 1342 175 0 43 chr4 11215412 11215646 -173073016 - MER58A DNA MER1_type 0 224 1 468 51 0 0 chr4 11216137 11216196 -173072466 + (TG)n Simple_repeat Simple_repeat 2 60 0 1959 112 0 11 chr4 11216283 11216597 -173072065 - AluSx SINE Alu 0 311 1 763 107 80 0 chr4 11216674 11216786 -173071876 - 5S rRNA rRNA 0 121 1 435 328 75 0 chr4 11217258 11217444 -173071218 + MIR SINE MIR 50 249 -13 461 290 193 0 chr4 11218094 11218270 -173070392 + L2 LINE L2 3021 3230 -42 349 304 48 0 chr4 11218283 11218408 -173070254 + MIR SINE MIR 44 174 -88 549 272 0 0 chr4 11219393 11219935 -173068727 + (TG)n Simple_repeat Simple_repeat 1 542 0 602 259 23 29 chr4 11219973 11220147 -173068515 - MIR SINE MIR -29 233 61 495 294 43 27 chr4 11220228 11220412 -173068250 - MER5A DNA MER1_type 0 189 3 247 185 0 56 chr4 11220438 11220492 -173068170 + L2 LINE L2 3213 3263 -9 302 261 210 0 chr4 11221357 11221476 -173067186 + MIR3 SINE MIR 3 146 -62 997 260 7 11 chr4 11222420 11222697 -173065965 - L1MC3 LINE L1 0 7785 7510 1154 81 7 0 chr4 11222720 11222869 -173065793 - AluSg SINE Alu -160 150 1 1837 193 60 53 chr4 11222871 11223213 -173065449 - L1MC3 LINE L1 -1097 6688 6341 1978 122 7 0 chr4 11223213 11223499 -173065163 - AluJb SINE Alu -24 288 1 1837 193 60 53 chr4 11223499 11223643 -173065019 - L1MC3 LINE L1 -1444 6341 6199 233 116 23 0 chr4 11223650 11223693 -173064969 - L1MC3 LINE L1 -1543 6242 6199 723 171 46 129 chr4 11223699 11223828 -173064834 - L1MC3 LINE L1 -1542 6243 6146 2111 115 0 0 chr4 11223828 11224123 -173064539 + AluSq SINE Alu 5 299 -14 723 171 46 129 chr4 11224123 11224256 -173064406 - L1MC3 LINE L1 -1639 6146 6003 499 319 133 11 chr4 11224273 11224640 -173064022 - L1MC3 LINE L1 -1810 5998 5587 978 276 54 13 chr4 11225019 11225410 -173063252 + L1MC3 LINE L1 7379 7785 0 2325 97 0 0 chr4 11225432 11225732 -173062930 + AluSx SINE Alu 1 300 -12 393 236 52 52 chr4 11225748 11225922 -173062740 + L2 LINE L2 2938 3111 -161 1783 204 75 81 chr4 11225935 11226311 -173062351 - L1MC3 LINE L1 -380 7405 7033 2208 117 3 0 chr4 11226311 11226620 -173062042 - AluSg SINE Alu 0 310 1 1783 204 75 81 chr4 11226620 11226859 -173061803 - L1MC3 LINE L1 -752 7033 6794 2044 119 3 7 chr4 11229419 11229712 -173058950 - AluJo SINE Alu -20 292 1 202 290 130 40 chr4 11230441 11230541 -173058121 - MER5B DNA MER1_type -5 173 65 180 278 19 0 chr4 11230617 11230671 -173057991 - MIR SINE MIR -65 143 89 2029 99 3 20 chr4 11230729 11231049 -173057613 - AluSx SINE Alu 0 315 1 223 182 36 36 chr4 11231102 11231157 -173057505 + MIR SINE MIR 85 139 -69 2095 110 0 0 chr4 11231201 11231545 -173057117 - AluSg SINE Alu 0 344 1 376 272 93 12 chr4 11231761 11231923 -173056739 + MER58A DNA MER1_type 42 216 -8 282 305 70 25 chr4 11232205 11232405 -173056257 + L2 LINE L2 2957 3165 -107 266 274 17 60 chr4 11233690 11233807 -173054855 + MIR SINE MIR 13 124 -138 386 286 110 0 chr4 11233985 11234139 -173054523 - MIR3 SINE MIR -22 186 16 236 258 134 0 chr4 11234556 11234653 -173054009 - MIR SINE MIR -63 145 36 870 268 67 42 chr4 11235743 11236146 -173052516 + MLT1C LTR MaLR 53 465 -2 802 191 64 25 chr4 11236717 11236921 -173051741 + MER20 DNA MER1_type 6 217 -2 300 301 78 2 chr4 11236932 11237068 -173051594 + MIR SINE MIR 31 143 -65 261 250 0 0 chr4 11237636 11237712 -173050950 + (TG)n Simple_repeat Simple_repeat 1 76 0 255 326 101 0 chr4 11239076 11239214 -173049448 + MIR SINE MIR 33 184 -78 605 258 154 41 chr4 11239454 11239799 -173048863 - MLT1C LTR MaLR -66 401 18 242 323 202 0 chr4 11239969 11240093 -173048569 - MIR SINE MIR -6 256 108 183 311 33 0 chr4 11240498 11240559 -173048103 - L2 LINE L2 -2 3270 3208 240 86 0 0 chr4 11242020 11242055 -173046607 + (TG)n Simple_repeat Simple_repeat 1 35 0 225 275 100 0 chr4 11242067 11242147 -173046515 + MIR SINE MIR 90 177 -85 203 193 0 57 chr4 11244132 11244220 -173044442 + CT-rich Low_complexity Low_complexity 2 84 0 219 295 67 0 chr4 11244483 11244588 -173044074 - MIR SINE MIR -62 146 35 188 308 0 0 chr4 11244810 11244862 -173043800 + L2 LINE L2 3221 3272 0 2411 256 152 31 chr4 11245475 11245576 -173043086 - L1MC4 LINE L1 -13 8029 7942 354 80 0 0 chr4 11245576 11245626 -173043036 + (TG)n Simple_repeat Simple_repeat 1 50 0 2411 256 152 31 chr4 11245626 11246637 -173042025 - L1MC4 LINE L1 -100 7942 6783 1789 213 58 11 chr4 11246637 11247070 -173041592 - LTR32 LTR ERVL 0 471 19 2127 96 51 0 chr4 11247116 11247408 -173041254 - AluSx SINE Alu -5 307 1 193 333 31 21 chr4 11247414 11247510 -173041152 - L2 LINE L2 -15 3257 3161 903 242 62 10 chr4 11247888 11248309 -173040353 + MLT1D LTR MaLR 14 486 -19 189 235 29 137 chr4 11248657 11248759 -173039903 + MER5A DNA MER1_type 1 91 -98 2080 74 88 0 chr4 11249245 11249528 -173039134 + AluSx SINE Alu 1 308 -4 291 153 27 54 chr4 11249753 11249864 -173038798 + CT-rich Low_complexity Low_complexity 1 108 0 311 219 31 25 chr4 11249920 11250080 -173038582 + CT-rich Low_complexity Low_complexity 1 161 0 499 283 11 33 chr4 11250110 11250290 -173038372 + C-rich Low_complexity Low_complexity 4 179 0 312 370 25 6 chr4 11252066 11252228 -173036434 + MIR SINE MIR 86 250 -12 318 304 45 9 chr4 11252280 11252342 -173036320 + MIR SINE MIR 48 117 -145 1467 207 51 10 chr4 11252342 11252637 -173036025 + AluJo SINE Alu 1 307 -5 318 304 45 9 chr4 11252637 11252686 -173035976 + MIR SINE MIR 117 163 -99 2051 125 0 13 chr4 11253396 11253699 -173034963 - AluSx SINE Alu -1 311 13 328 336 27 0 chr4 11254543 11254653 -173034009 - MIR SINE MIR -111 151 39 226 298 34 73 chr4 11255388 11255566 -173033096 - MIR3 SINE MIR -30 178 8 262 354 34 0 chr4 11256003 11256135 -173032527 + MIR SINE MIR 45 182 -63 497 305 28 7 chr4 11256530 11256671 -173031991 - MIR3 SINE MIR -46 162 19 243 88 0 0 chr4 11256842 11256876 -173031786 + (TG)n Simple_repeat Simple_repeat 2 35 0 542 105 13 0 chr4 11257182 11257258 -173031404 + MADE1 DNA Mariner 1 77 -3 184 231 0 19 chr4 11257828 11257880 -173030782 + MIR SINE MIR 104 154 -108 1340 250 120 19 chr4 11258499 11258923 -173029739 - MLT1C LTR MaLR 0 467 1 1708 218 114 2 chr4 11260178 11260702 -173027960 - L1MD3 LINE L1 0 8040 7472 2215 107 3 3 chr4 11261089 11261398 -173027264 - AluSx SINE Alu -1 311 3 186 43 0 0 chr4 11261403 11261426 -173027236 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2081 116 0 7 chr4 11262361 11262663 -173025999 - AluSx SINE Alu -11 301 2 398 335 0 28 chr4 11262666 11262848 -173025814 + (CATA)n Simple_repeat Simple_repeat 3 179 0 * 425 339 0 32 chr4 11262753 11262939 -173025723 + (CA)n Simple_repeat Simple_repeat 1 180 0 193 302 105 12 chr4 11263320 11263406 -173025256 - MIR SINE MIR -56 206 113 460 207 36 9 chr4 11267564 11267675 -173020987 - MER81 DNA DNA 0 114 1 196 202 17 34 chr4 11268128 11268247 -173020415 + (TGAG)n Simple_repeat Simple_repeat 4 120 0 2047 260 13 74 chr4 11268850 11269033 -173019629 - L1 LINE L1 -2705 3441 3248 831 135 8 8 chr4 11269033 11269166 -173019496 - FLAM_C SINE Alu 0 133 1 2047 260 13 74 chr4 11269166 11269514 -173019148 - L1 LINE L1 -2898 3248 2982 2016 110 10 7 chr4 11269514 11269805 -173018857 - AluJb SINE Alu -12 300 9 2047 260 13 74 chr4 11269805 11270150 -173018512 - L1 LINE L1 -3164 2982 2617 201 180 20 20 chr4 11270903 11270953 -173017709 + G-rich Low_complexity Low_complexity 6 55 0 655 253 39 28 chr4 11271582 11271764 -173016898 + MER5A DNA MER1_type 6 189 0 861 133 27 12 chr4 11272328 11272591 -173016071 + (TCCA)n Simple_repeat Simple_repeat 1 267 0 903 154 26 5 chr4 11272615 11273194 -173015468 + (TCCA)n Simple_repeat Simple_repeat 1 591 0 903 169 0 0 chr4 11273210 11273382 -173015280 + (TCCA)n Simple_repeat Simple_repeat 4 175 0 452 259 24 0 chr4 11274512 11274643 -173014019 - MIR3 SINE MIR -52 156 45 236 263 0 0 chr4 11276671 11276728 -173011934 - L2 LINE L2 -217 3055 2999 375 244 0 0 chr4 11277980 11278111 -173010551 + (CA)n Simple_repeat Simple_repeat 2 132 0 432 267 0 0 chr4 11278162 11278342 -173010320 + (CA)n Simple_repeat Simple_repeat 1 180 0 218 243 37 37 chr4 11278395 11278502 -173010160 + L2 LINE L2 3004 3110 -162 377 275 9 18 chr4 11280084 11280193 -173008469 - MIR SINE MIR -74 188 81 739 237 16 5 chr4 11280707 11280897 -173007765 - L1MB5 LINE L1 -2 6172 5981 256 307 58 22 chr4 11281484 11281621 -173007041 + MIR3 SINE MIR 4 145 -63 4663 87 12 23 chr4 11281748 11282254 -173006408 + MER41B LTR ERV1 1 500 -135 2083 109 3 7 chr4 11282254 11282556 -173006106 - AluSx SINE Alu -11 301 1 4663 87 12 23 chr4 11282556 11282691 -173005971 + MER41B LTR ERV1 500 635 0 198 323 141 0 chr4 11282691 11282790 -173005872 + MIR SINE MIR 97 209 -53 199 139 0 0 chr4 11283256 11283292 -173005370 - MIR SINE MIR -92 116 81 249 244 24 61 chr4 11283389 11283471 -173005191 - MIR3 SINE MIR -40 168 90 376 370 0 0 chr4 11283660 11283787 -173004875 + L3 LINE CR1 1337 1463 -114 307 283 49 136 chr4 11284042 11284226 -173004436 + MIR SINE MIR 51 218 -44 1143 286 54 52 chr4 11284332 11284929 -173003733 + MLT1E1 LTR MaLR 57 654 0 501 230 37 47 chr4 11285525 11285716 -173002946 + MER51C LTR ERV1 452 640 0 275 321 80 18 chr4 11286901 11287175 -173001487 + L1M4 LINE L1 4112 4402 -1744 1218 25 25 0 chr4 11287188 11287346 -173001316 + MLT2A1 LTR ERVL 1 162 -282 409 322 48 40 chr4 11287348 11287442 -173001220 + L1M4 LINE L1 4966 5058 -1088 2363 85 3 0 chr4 11287442 11287749 -173000913 + AluSx SINE Alu 1 308 -4 409 322 48 40 chr4 11287749 11287881 -173000781 + L1M4 LINE L1 5058 5194 -952 1256 241 117 57 chr4 11287960 11287999 -173000663 - MLT2B1 LTR ERVL -1 519 484 369 0 0 0 chr4 11287999 11288040 -173000622 + (TA)n Simple_repeat Simple_repeat 1 41 0 * 462 18 0 0 chr4 11288039 11288094 -173000568 + (CA)n Simple_repeat Simple_repeat 2 56 0 1256 241 117 57 chr4 11288040 11288543 -173000119 - MLT2B1 LTR ERVL -36 484 2 751 225 113 0 chr4 11288794 11289016 -172999646 - Tigger3(Golem) DNA MER2_type -15 3014 2768 287 353 79 0 chr4 11289132 11289271 -172999391 + MIR SINE MIR 58 207 -55 757 145 0 0 chr4 11289307 11289424 -172999238 - FLAM_A SINE Alu -1 141 25 248 340 131 34 chr4 11289544 11289812 -172998850 + L2 LINE L2 2978 3271 -1 360 272 144 6 chr4 11290718 11290898 -172997764 - MLT1D LTR MaLR 0 505 301 345 265 0 20 chr4 11290962 11291060 -172997602 - MLT1D LTR MaLR -309 196 101 340 246 24 0 chr4 11291798 11291924 -172996738 + CT-rich Low_complexity Low_complexity 4 132 0 1232 118 5 0 chr4 11292438 11292624 -172996038 - AluY SINE Alu -2 309 123 440 202 81 0 chr4 11292877 11292976 -172995686 + MIR SINE MIR 76 182 -80 2113 142 34 31 chr4 11292985 11293430 -172995232 + LTR32 LTR ERVL 13 458 -13 518 283 19 13 chr4 11293822 11293981 -172994681 - MER63A DNA MER1_type -41 169 10 247 237 7 66 chr4 11294094 11294174 -172994488 + MIR3 SINE MIR 93 170 -38 281 297 21 25 chr4 11294281 11294476 -172994186 + L1ME LINE L1 5508 5702 -462 593 314 49 5 chr4 11295038 11295271 -172993391 - MIR SINE MIR -18 244 4 255 157 20 0 chr4 11295372 11295423 -172993239 + L2 LINE L2 3262 3313 0 694 277 163 3 chr4 11295804 11296104 -172992558 + LTR16C LTR ERVL 139 486 -5 302 279 0 0 chr4 11296256 11296324 -172992338 - L2 LINE L2 -208 3064 2997 264 238 69 10 chr4 11296856 11296957 -172991705 - L1ME4a LINE L1 -48 6073 5967 438 238 100 38 chr4 11296988 11297148 -172991514 - L1M4 LINE L1 -1511 4635 4466 446 319 102 12 chr4 11297161 11297420 -172991242 - L1ME4a LINE L1 -202 5919 5632 2532 53 0 0 chr4 11297550 11297852 -172990810 + AluY SINE Alu 1 302 -9 520 255 28 0 chr4 11298091 11298232 -172990430 - L1ME3A LINE L1 -5 6165 6021 1086 202 43 0 chr4 11298247 11298455 -172990207 + MER20 DNA MER1_type 1 217 -2 277 171 158 0 chr4 11299440 11299516 -172989146 - MER96 DNA MER1_type? -86 89 2 356 358 28 17 chr4 11299721 11299897 -172988765 + MIR SINE MIR 6 183 -79 312 287 7 44 chr4 11301734 11301870 -172986792 + MLT1K LTR MaLR 454 584 -4 524 249 57 36 chr4 11302028 11302221 -172986441 + ORSL DNA AcHobo 13 209 -66 1761 196 28 11 chr4 11302307 11302664 -172985998 + MLT1A1 LTR MaLR 3 365 0 300 289 221 29 chr4 11303680 11303888 -172984774 - MIR SINE MIR 0 262 15 286 216 70 12 chr4 11304295 11304407 -172984255 - LTR45 LTR ERV1 -13 609 390 445 287 33 0 chr4 11304532 11304654 -172984008 - MER72 LTR ERV1 -264 458 333 219 270 153 9 chr4 11304807 11304918 -172983744 - MIR SINE MIR -45 217 91 657 229 120 36 chr4 11305419 11305611 -172983051 + MER63A DNA MER1_type 3 210 0 820 241 3 71 chr4 11306130 11306412 -172982250 + HAL1 LINE L1 1465 1727 -780 547 251 87 0 chr4 11306414 11306499 -172982163 + HAL1 LINE L1 1926 2002 -505 231 36 0 0 chr4 11306499 11306527 -172982135 + (CA)n Simple_repeat Simple_repeat 1 28 0 547 251 87 0 chr4 11306527 11306636 -172982026 + HAL1 LINE L1 2002 2137 -370 2412 176 63 10 chr4 11306645 11307156 -172981506 - MER54A LTR ERVL 0 901 147 463 256 13 13 chr4 11307226 11307382 -172981280 + HAL1 LINE L1 2193 2348 -159 1192 132 29 23 chr4 11307386 11307723 -172980939 + Tigger1 DNA MER2_type 26 2417 -1 250 296 15 76 chr4 11307751 11307883 -172980779 + HAL1 LINE L1 2368 2491 -16 2619 29 3 0 chr4 11307883 11308191 -172980471 - AluY SINE Alu -2 309 1 4715 147 87 6 chr4 11308218 11309161 -172979501 - L1MA5 LINE L1 -5 6295 5286 5505 165 44 36 chr4 11309237 11310311 -172978351 - L1MA5 LINE L1 -816 5330 4243 2156 105 3 0 chr4 11310311 11310607 -172978055 - AluSq SINE Alu -16 297 1 5505 165 44 36 chr4 11310607 11310792 -172977870 - L1MA5 LINE L1 -1903 4243 4061 2030 106 10 22 chr4 11311475 11311786 -172976876 - AluSx SINE Alu 0 312 6 247 163 0 0 chr4 11311967 11312010 -172976652 - Alu SINE Alu -265 43 1 602 156 93 70 chr4 11312025 11312252 -172976410 - LTR18B LTR ERVL -146 468 149 1222 121 0 0 chr4 11312267 11312862 -172975800 + ALR/Alpha Satellite centromeric 1 595 -51 284 265 84 12 chr4 11312870 11312953 -172975709 + L2 LINE L2 3183 3271 -42 284 301 32 0 chr4 11314300 11314393 -172974269 - MIR SINE MIR -72 190 95 219 282 56 14 chr4 11315189 11315260 -172973402 - MIR3 SINE MIR -54 154 81 540 323 42 21 chr4 11315618 11315906 -172972756 + L1ME LINE L1 5300 5593 -577 275 304 49 29 chr4 11316424 11316526 -172972136 + MIR3 SINE MIR 78 181 -27 247 265 0 0 chr4 11316686 11316735 -172971927 + L2 LINE L2 3221 3269 -3 24 0 0 0 chr4 11317187 11317211 -172971451 + GC_rich Low_complexity Low_complexity 1 24 0 318 67 0 0 chr4 11317580 11317625 -172971037 + (TTAGGG)n Simple_repeat Simple_repeat 6 50 0 267 248 0 0 chr4 11318155 11318243 -172970419 + MIR SINE MIR 63 146 -62 286 270 46 0 chr4 11318592 11318721 -172969941 + MIR SINE MIR 13 148 -60 2025 102 0 11 chr4 11318725 11319061 -172969601 + AluSx SINE Alu 1 333 0 1525 162 30 4 chr4 11319118 11319383 -172969279 - MLT1B LTR MaLR -2 388 117 5050 168 53 20 chr4 11319484 11320449 -172968213 + Tigger2 DNA MER2_type 155 1151 -1567 822 99 7 119 chr4 11320449 11320600 -172968062 + AluJo SINE Alu 2 135 -177 1832 120 101 0 chr4 11320605 11320913 -172967749 + Tigger2 DNA MER2_type 1134 1472 -1246 863 107 15 0 chr4 11321774 11321905 -172966757 - AluJb SINE Alu -179 133 1 2143 111 3 3 chr4 11322502 11322808 -172965854 - AluSq SINE Alu -7 306 1 637 203 11 0 chr4 11324594 11324771 -172963891 + (TGGG)n Simple_repeat Simple_repeat 1 179 0 533 354 16 0 chr4 11324871 11325063 -172963599 - MIR SINE MIR -60 202 8 2087 133 0 3 chr4 11325737 11326046 -172962616 + AluSx SINE Alu 1 308 -4 1984 116 0 17 chr4 11327221 11327514 -172961148 + AluSx SINE Alu 1 288 -24 446 355 90 30 chr4 11327516 11327820 -172960842 - HAL1 LINE L1 -914 1593 1266 1827 151 20 0 chr4 11327820 11328118 -172960544 - AluJo SINE Alu -8 304 1 446 355 90 30 chr4 11328118 11328145 -172960517 - HAL1 LINE L1 -1241 1266 1242 880 161 0 0 chr4 11329203 11329333 -172959329 + FLAM_C SINE Alu 2 131 -2 2086 101 0 14 chr4 11329349 11329670 -172958992 + AluSx SINE Alu 1 317 0 3564 125 21 21 chr4 11330143 11330670 -172957992 - MER1A DNA MER1_type 0 527 1 1497 144 0 4 chr4 11330958 11331201 -172957461 - AluSx SINE Alu -70 242 1 1389 87 0 0 chr4 11331204 11331387 -172957275 + L1MA2 LINE L1 6122 6304 0 762 203 6 37 chr4 11331444 11331607 -172957055 + MER20 DNA MER1_type 62 219 0 724 216 0 0 chr4 11331659 11331793 -172956869 - AluJo SINE Alu -176 136 3 810 250 103 14 chr4 11331864 11332161 -172956501 + L2 LINE L2 2758 3074 -239 290 232 64 56 chr4 11332743 11332868 -172955794 - L2 LINE L2 -2 3311 3186 1621 152 43 0 chr4 11333378 11333679 -172954983 - AluSx SINE Alu 0 312 1 228 240 40 0 chr4 11334036 11334111 -172954551 + MIR SINE MIR 76 153 -109 353 264 64 29 chr4 11335579 11335719 -172952943 - L2 LINE L2 -2 3311 3167 721 127 13 89 chr4 11336448 11336605 -172952057 - AluSg/x SINE Alu 0 312 168 1653 172 0 14 chr4 11336713 11337004 -172951658 + AluJb SINE Alu 1 287 -25 368 189 0 54 chr4 11337004 11337078 -172951584 + Tigger2 DNA MER2_type 2639 2708 -10 505 249 30 77 chr4 11337084 11337253 -172951409 - MIR SINE MIR 0 262 102 291 227 159 0 chr4 11337529 11337617 -172951045 - L2 LINE L2 -7 3306 3205 271 194 206 69 chr4 11338140 11338300 -172950362 - L1MC5 LINE L1 -48 7913 7732 1720 116 60 21 chr4 11338362 11338647 -172950015 - AluSx SINE Alu -16 296 1 1610 171 17 10 chr4 11338651 11338944 -172949718 - AluJb SINE Alu -17 295 1 2190 81 3 3 chr4 11339925 11340220 -172948442 + AluSp SINE Alu 1 295 -18 2204 92 0 0 chr4 11340221 11340534 -172948128 + AluSc SINE Alu 1 313 0 279 145 48 0 chr4 11341415 11341477 -172947185 - L1MCc LINE L1 -6174 249 185 367 226 2 0 chr4 11341931 11342014 -172946648 + MER33 DNA MER1_type 1 73 -97 * 506 218 78 0 chr4 11342012 11342154 -172946508 + MER33 DNA MER1_type 211 363 0 860 286 92 45 chr4 11347150 11347399 -172941263 + MLT1C LTR MaLR 2 283 -184 8387 52 12 4 chr4 11347399 11348398 -172940264 - LTR13 LTR ERVK 0 1007 1 860 286 92 45 chr4 11348398 11348592 -172940070 + MLT1C LTR MaLR 283 466 -1 246 263 95 0 chr4 11348868 11348963 -172939699 + MER20 DNA MER1_type 26 129 -90 207 100 0 0 chr4 11349257 11349287 -172939375 + (A)n Simple_repeat Simple_repeat 1 30 0 678 211 157 12 chr4 11349642 11349808 -172938854 + MER21B LTR ERV1 1 190 -673 * 920 206 76 76 chr4 11349803 11350079 -172938583 + MER21B LTR ERV1 581 856 -7 248 250 0 0 chr4 11350148 11350220 -172938442 + L1M4 LINE L1 5106 5177 -969 511 239 71 13 chr4 11351033 11351188 -172937474 - MER20 DNA MER1_type -53 166 3 279 354 42 14 chr4 11352747 11352891 -172935771 + L2 LINE L2 3125 3272 0 870 166 0 0 chr4 11353385 11353560 -172935102 + (TGGA)n Simple_repeat Simple_repeat 4 178 0 29 0 0 0 chr4 11356391 11356420 -172932242 + AT_rich Low_complexity Low_complexity 1 29 0 30 45 0 0 chr4 11356592 11356636 -172932026 + AT_rich Low_complexity Low_complexity 1 44 0 383 281 79 17 chr4 11358421 11358599 -172930063 - MIR SINE MIR -54 208 20 1883 231 70 30 chr4 11358605 11359279 -172929383 + L1M4 LINE L1 3066 3766 -2380 1303 105 0 42 chr4 11359279 11359469 -172929193 + AluSg/x SINE Alu 122 303 -9 1555 168 14 119 chr4 11359470 11359576 -172929086 + L1M4 LINE L1 5279 5395 -783 2112 119 33 0 chr4 11359576 11359879 -172928783 + AluSq SINE Alu 1 313 0 1555 168 14 119 chr4 11359879 11360007 -172928655 + L1M4 LINE L1 5395 5535 -643 701 184 0 16 chr4 11360007 11360132 -172928530 + FLAM_A SINE Alu 1 123 -10 1555 168 14 119 chr4 11360132 11360143 -172928519 + L1M4 LINE L1 5535 5546 -632 2329 107 7 7 chr4 11360143 11360453 -172928209 + AluSg SINE Alu 1 310 0 1555 168 14 119 chr4 11360453 11360651 -172928011 + L1M4 LINE L1 5546 5677 -501 335 278 136 26 chr4 11360975 11361166 -172927496 - MIR SINE MIR -1 261 50 358 319 0 0 chr4 11361222 11361313 -172927349 + MIR SINE MIR 2 92 -170 5221 94 31 9 chr4 11361354 11362117 -172926545 + LTR17 LTR ERV1 1 780 0 5179 72 13 21 chr4 11362134 11362833 -172925829 + HERV17 LTR ERV1 17 709 -7917 1352 117 46 11 chr4 11363103 11363384 -172925278 + HERV17 LTR ERV1 929 1219 -5677 919 67 0 22 chr4 11363390 11363524 -172925138 + HERV17 LTR ERV1 3008 3138 -5488 10900 58 14 3 chr4 11363761 11365148 -172923514 + HERV17 LTR ERV1 3185 4587 -4039 18809 52 8 2 chr4 11365249 11367616 -172921046 + HERV17 LTR ERV1 4767 7147 -1479 279 77 0 0 chr4 11367612 11367651 -172921011 + HERV17 LTR ERV1 7510 7548 -1078 * 2398 38 3 0 chr4 11367641 11367932 -172920730 + HERV17 LTR ERV1 8335 8626 0 4917 108 11 16 chr4 11367932 11368676 -172919986 + LTR17 LTR ERV1 1 740 -40 822 88 0 0 chr4 11369711 11369813 -172918849 + FLAM_C SINE Alu 9 110 -33 650 295 43 9 chr4 11369850 11370060 -172918602 + LTR16C LTR ERVL 275 491 0 4546 30 2 2 chr4 11370091 11370649 -172918013 - LTR6B LTR ERV1 0 558 1 716 153 8 0 chr4 11370724 11370842 -172917820 + FLAM_A SINE Alu 19 137 -5 183 333 0 25 chr4 11370906 11370987 -172917675 - L2 LINE L2 -932 2382 2304 2383 110 0 0 chr4 11371484 11371785 -172916877 + AluSq SINE Alu 1 301 -12 180 331 100 15 chr4 11372401 11372531 -172916131 - L2 LINE L2 -834 2480 2340 2512 62 0 0 chr4 11373151 11373443 -172915219 - AluY SINE Alu -19 292 1 21 0 0 0 chr4 11373445 11373466 -172915196 + AT_rich Low_complexity Low_complexity 1 21 0 775 164 56 80 chr4 11373747 11373960 -172914702 - MER3 DNA MER1_type 0 209 2 702 251 58 67 chr4 11374159 11374459 -172914203 + MLT1C LTR MaLR 102 390 0 1750 223 43 5 chr4 11374876 11374959 -172913703 + LTR2 LTR ERV1 41 119 -330 207 0 0 0 chr4 11374959 11374982 -172913680 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1750 223 43 5 chr4 11374982 11375292 -172913370 + LTR2 LTR ERV1 119 449 0 3694 154 46 62 chr4 11375292 11376120 -172912542 + Harlequin LTR ERV1 1 840 -6973 2456 77 0 19 chr4 11376120 11376430 -172912232 + AluY SINE Alu 2 305 -6 3694 154 46 62 chr4 11376430 11377421 -172911241 + Harlequin LTR ERV1 840 4331 -3482 1133 230 0 0 chr4 11377421 11377621 -172911041 + Harlequin LTR ERV1 1721 1920 -6506 2283 78 0 30 chr4 11377622 11377918 -172910744 + AluY SINE Alu 11 297 -14 343 247 40 51 chr4 11377938 11378061 -172910601 - L1MC4 LINE L1 -1334 6708 6608 569 239 146 0 chr4 11378061 11378191 -172910471 + Harlequin LTR ERV1 1937 2085 -6341 1940 244 13 2 chr4 11378437 11378834 -172909828 + Harlequin LTR ERV1 2069 2469 -5957 574 248 35 21 chr4 11378814 11378959 -172909703 + Harlequin LTR ERV1 3678 3824 -4602 * 6444 190 21 7 chr4 11378949 11380081 -172908581 + Harlequin LTR ERV1 5148 6295 -2131 1406 216 43 25 chr4 11380155 11380660 -172908002 + Harlequin LTR ERV1 7012 7604 -209 500 204 18 9 chr4 11380640 11380753 -172907909 + Harlequin LTR ERV1 6782 6895 -1 * 1702 199 44 49 chr4 11380826 11381237 -172907425 + LTR2 LTR ERV1 41 449 0 3431 123 11 22 chr4 11382639 11383193 -172905469 - LTR14 LTR ERVK 0 548 1 2397 231 57 19 chr4 11383367 11383963 -172904699 - MLT1E2 LTR MaLR -7 619 1 997 225 22 13 chr4 11384347 11384574 -172904088 + MIR SINE MIR 34 262 0 1345 128 0 5 chr4 11384663 11384850 -172903812 + AluSq SINE Alu 77 262 -51 210 282 168 30 chr4 11385021 11385152 -172903510 + MIR SINE MIR 44 141 -67 286 238 48 0 chr4 11385179 11385263 -172903399 - L1M4 LINE L1 -1416 4730 4643 2313 102 7 0 chr4 11385279 11385583 -172903079 - AluY SINE Alu -5 306 1 1297 164 18 13 chr4 11385716 11385941 -172902721 + AluJb SINE Alu 42 267 -45 1727 208 60 11 chr4 11385941 11386461 -172902201 + L1M4 LINE L1 4813 5357 -789 701 162 0 11 chr4 11386664 11386843 -172901819 + (CGTG)n Simple_repeat Simple_repeat 3 179 0 210 302 21 0 chr4 11386873 11386969 -172901693 + (CGGAG)n Simple_repeat Simple_repeat 5 102 0 229 206 22 0 chr4 11386993 11387085 -172901577 + (CGGAG)n Simple_repeat Simple_repeat 5 98 0 2925 141 59 36 chr4 11387861 11388519 -172900143 + MER4C-int LTR ERV1 793 1465 -6655 1706 150 4 4 chr4 11388520 11388786 -172899876 + AluSx SINE Alu 1 266 -46 410 121 0 0 chr4 11388900 11388958 -172899704 - AluJ/FLAM SINE Alu -244 58 1 4419 167 50 88 chr4 11388976 11389340 -172899322 + MER4C-int LTR ERV1 3798 4174 -3946 333 0 0 0 chr4 11389340 11389377 -172899285 + (TAA)n Simple_repeat Simple_repeat 1 37 0 4419 167 50 88 chr4 11389377 11389459 -172899203 + MER4C-int LTR ERV1 4174 4258 -3862 2272 69 54 0 chr4 11389459 11389736 -172898926 + AluY SINE Alu 1 292 -19 4419 167 50 88 chr4 11389736 11389889 -172898773 + MER4C-int LTR ERV1 4258 4415 -3705 207 0 0 0 chr4 11389889 11389912 -172898750 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4419 167 50 88 chr4 11389912 11390518 -172898144 + MER4C-int LTR ERV1 4415 4959 -3161 523 148 230 8 chr4 11390672 11390799 -172897863 + MER4C LTR ERV1 300 655 -9 845 148 34 7 chr4 11390811 11390960 -172897702 + MER4E LTR ERV1 627 779 0 1868 159 37 88 chr4 11390962 11391112 -172897550 + MER4C-int LTR ERV1 3502 3658 -2940 2207 110 10 16 chr4 11391112 11391422 -172897240 - AluSc SINE Alu -1 308 1 1868 159 37 88 chr4 11391422 11391689 -172896973 + MER4C-int LTR ERV1 3658 3889 -2709 1827 160 0 0 chr4 11391689 11391957 -172896705 - AluJb SINE Alu -44 268 1 1868 159 37 88 chr4 11391957 11392073 -172896589 + MER4C-int LTR ERV1 3889 4009 -2589 6639 155 57 58 chr4 11392227 11392499 -172896163 + MER4C-int LTR ERV1 4990 5261 -1337 2161 120 10 7 chr4 11392499 11392791 -172895871 - AluSg SINE Alu -17 293 1 1737 153 30 33 chr4 11392801 11393102 -172895560 - AluSx SINE Alu -12 300 1 6639 155 57 58 chr4 11393102 11394415 -172894247 + MER4C-int LTR ERV1 5270 6584 -14 2276 139 93 14 chr4 11394440 11394870 -172893792 + MER4C LTR ERV1 2 465 0 237 244 0 0 chr4 11394885 11394971 -172893691 + (ATGGTG)n Simple_repeat Simple_repeat 5 90 0 390 330 40 44 chr4 11394997 11395041 -172893621 - MIR SINE MIR -11 251 208 2436 96 0 0 chr4 11395041 11395344 -172893318 - AluSg SINE Alu -7 303 1 390 330 40 44 chr4 11395344 11395526 -172893136 - MIR SINE MIR -54 208 26 534 311 48 0 chr4 11395969 11396136 -172892526 - MER63A DNA MER1_type -35 175 1 319 276 112 8 chr4 11396669 11396803 -172891859 + L2 LINE L2 3166 3313 0 838 235 84 104 chr4 11396844 11397248 -172891414 - MLT2C1 LTR ERVL -1 396 1 234 237 216 10 chr4 11397758 11397855 -172890807 + MIR SINE MIR 31 147 -61 190 107 0 0 chr4 11398999 11399027 -172889635 - MIR SINE MIR -118 144 117 2143 112 14 0 chr4 11399482 11399777 -172888885 + AluSq SINE Alu 1 299 -14 1500 153 76 138 chr4 11400819 11400937 -172887725 - Tigger2a DNA MER2_type -2274 434 310 2245 132 0 0 chr4 11400937 11401248 -172887414 - AluSx SINE Alu -1 311 1 1500 153 76 138 chr4 11401248 11401592 -172887070 - Tigger2a DNA MER2_type -2398 310 1 698 218 94 59 chr4 11401879 11402421 -172886241 - MLT1E3 LTR MaLR -1 623 1 2095 147 0 0 chr4 11402554 11402853 -172885809 + AluSx SINE Alu 1 299 -13 199 133 0 0 chr4 11403333 11403363 -172885299 - MIR SINE MIR -63 145 116 216 225 127 0 chr4 11403374 11403445 -172885217 - MIR SINE MIR -64 198 119 257 306 65 0 chr4 11403509 11403617 -172885045 - L2 LINE L2 -3 3269 3155 189 189 38 19 chr4 11403931 11403984 -172884678 - L2 LINE L2 -340 2973 2920 * 285 292 115 9 chr4 11403967 11404080 -172884582 + L3 LINE CR1 1353 1477 -100 227 359 35 7 chr4 11404089 11404234 -172884428 - L2 LINE L2 -798 2516 2368 702 257 91 53 chr4 11404789 11405054 -172883608 - MLT1J LTR MaLR -3 508 234 1930 137 0 31 chr4 11405091 11405412 -172883250 + AluSx SINE Alu 1 311 -1 226 333 0 0 chr4 11405989 11406061 -172882601 - MLT1L LTR MaLR -541 74 3 907 191 98 16 chr4 11406411 11406605 -172882057 - MSTD LTR MaLR 0 396 187 377 247 0 12 chr4 11407709 11407794 -172880868 + MER63 DNA MER1_type 678 761 -299 257 112 0 5 chr4 11407805 11407859 -172880803 - MLT2B1 LTR ERVL -1 519 480 211 93 47 0 chr4 11407859 11407902 -172880760 + GA-rich Low_complexity Low_complexity 2 46 0 1058 264 60 31 chr4 11407902 11408323 -172880339 - MLT2B1 LTR ERVL -37 517 7 2743 102 13 0 chr4 11408814 11409208 -172879454 - LTR8 LTR ERV1 0 691 293 788 155 21 14 chr4 11409201 11409343 -172879319 - MER4B LTR ERV1 -467 143 1 * 333 243 56 9 chr4 11409595 11409702 -172878960 - MLT1D LTR MaLR -71 396 285 1604 177 6 22 chr4 11409844 11410194 -172878468 - MER4A LTR ERV1 -5 659 257 476 163 0 12 chr4 11410190 11410270 -172878392 - MER4A LTR ERV1 -566 98 20 * 353 222 89 0 chr4 11410279 11410369 -172878293 - MLT1D LTR MaLR -402 103 6 915 260 108 25 chr4 11410372 11410734 -172877928 + LTR34 LTR ERV1 304 695 -4 189 280 115 48 chr4 11411960 11412206 -172876456 + L2 LINE L2 2722 3036 -277 1891 104 16 167 chr4 11412591 11413033 -172875629 - THE1C LTR MaLR 0 375 1 201 333 127 24 chr4 11414262 11414475 -172874187 + L2 LINE L2 2826 3060 -253 456 141 65 11 chr4 11414664 11414756 -172873906 - AluSg/x SINE Alu -20 289 193 1854 155 13 3 chr4 11414856 11415159 -172873503 + AluJb SINE Alu 1 306 -6 594 263 119 19 chr4 11415541 11415924 -172872738 + MLT1C LTR MaLR 64 458 -9 393 177 25 13 chr4 11416050 11416129 -172872533 + MIR SINE MIR 106 185 -77 282 350 148 11 chr4 11417365 11417548 -172871114 - MIR SINE MIR -6 256 49 265 235 49 49 chr4 11417693 11417795 -172870867 + MIR SINE MIR 17 118 -90 231 279 33 41 chr4 11419516 11419638 -172869024 + L2 LINE L2 2917 3037 -235 274 333 19 19 chr4 11420383 11420491 -172868171 + L2 LINE L2 3162 3269 -3 637 297 86 0 chr4 11420752 11420961 -172867701 - MER45C DNA AcHobo -21 932 706 353 273 91 0 chr4 11420961 11421071 -172867591 - MER45C DNA AcHobo -550 403 284 4710 132 101 11 chr4 11421101 11421344 -172867318 - MER4D LTR ERV1 -8 895 675 2183 137 16 44 chr4 11421344 11421730 -172866932 + THE1C LTR MaLR 1 375 0 4710 132 101 11 chr4 11421730 11422307 -172866355 - MER4D LTR ERV1 -228 675 1 468 188 170 0 chr4 11422307 11422418 -172866244 - MER45C DNA AcHobo -766 187 58 1938 156 0 0 chr4 11422764 11423071 -172865591 + AluJb SINE Alu 5 311 -1 1762 149 4 4 chr4 11423410 11423718 -172864944 - AluSx SINE Alu 0 310 3 440 267 31 63 chr4 11423874 11424065 -172864597 - MLT1J1 LTR MaLR -27 419 235 2082 124 29 29 chr4 11424067 11424413 -172864249 + MER4D LTR ERV1 2 347 -556 409 99 0 113 chr4 11424413 11424484 -172864178 - AluS SINE Alu -242 71 9 408 294 25 19 chr4 11424486 11424646 -172864016 + L1MDa LINE L1 1025 1185 -5355 34 24 0 0 chr4 11425305 11425346 -172863316 + AT_rich Low_complexity Low_complexity 1 41 0 1830 136 0 17 chr4 11425346 11425641 -172863021 - AluSq SINE Alu -23 290 1 2627 226 108 91 chr4 11425643 11426375 -172862287 + L1MB7 LINE L1 3934 4652 -1526 604 178 178 38 chr4 11426375 11426398 -172862264 + AluJb SINE Alu 113 131 -181 1967 135 10 0 chr4 11426398 11426687 -172861975 + AluSx SINE Alu 1 292 -20 604 178 178 38 chr4 11426687 11426820 -172861842 + AluJb SINE Alu 131 291 -21 2627 226 108 91 chr4 11426820 11427358 -172861304 + L1MB7 LINE L1 4652 5179 -999 1520 239 42 22 chr4 11427358 11427714 -172860948 + MLT1A1 LTR MaLR 3 365 0 2627 226 108 91 chr4 11427714 11428096 -172860566 + L1MB7 LINE L1 5179 5786 -392 951 119 8 0 chr4 11428096 11428230 -172860432 + AluJo SINE Alu 1 135 -177 1787 177 3 0 chr4 11428230 11428535 -172860127 + AluJb SINE Alu 1 306 -6 1594 201 23 18 chr4 11428548 11428932 -172859730 + L1MB7 LINE L1 5783 6168 -16 406 179 51 103 chr4 11428942 11429098 -172859564 + L1MDa LINE L1 1469 1616 -4924 855 149 0 15 chr4 11429302 11429436 -172859226 - FLAM_C SINE Alu -1 132 1 372 289 92 80 chr4 11429436 11429675 -172858987 + L1ME1 LINE L1 5920 6164 0 224 333 30 20 chr4 11430211 11430310 -172858352 + MIR SINE MIR 50 149 -113 259 281 112 0 chr4 11431575 11431664 -172856998 - MER5C DNA MER1_type -215 109 11 2106 126 3 22 chr4 11432042 11432359 -172856303 - AluSx SINE Alu -1 311 1 306 404 0 0 chr4 11432359 11432525 -172856137 - L1M4 LINE L1 -1102 5044 4879 199 252 191 17 chr4 11432561 11432676 -172855986 + L2 LINE L2 2957 3091 -181 269 317 60 11 chr4 11432761 11432947 -172855715 + MIR SINE MIR 64 261 -1 315 0 0 0 chr4 11433933 11433968 -172854694 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 313 286 0 0 chr4 11433968 11434045 -172854617 + MIR SINE MIR 109 185 -77 321 291 27 9 chr4 11434598 11434708 -172853954 - L2 LINE L2 -3 3269 3158 225 285 154 32 chr4 11434699 11434822 -172853840 + MIR SINE MIR 55 192 -70 * 293 226 48 0 chr4 11434849 11434933 -172853729 - L1M4 LINE L1 -1416 4730 4643 2129 130 0 0 chr4 11434949 11435256 -172853406 - AluSx SINE Alu -5 307 1 2386 258 27 0 chr4 11435332 11436025 -172852637 - L1M4 LINE L1 -2159 3987 3276 757 278 66 66 chr4 11436213 11436562 -172852100 - MLT1J LTR MaLR -6 505 157 383 231 33 0 chr4 11436711 11436802 -172851860 - MIR3 SINE MIR -54 154 61 2566 50 0 0 chr4 11437693 11437996 -172850666 - AluY SINE Alu -8 303 1 245 303 59 8 chr4 11439062 11439181 -172849481 - MIR3 SINE MIR -25 183 59 1540 233 51 53 chr4 11439801 11439859 -172848803 - LTR26 LTR ERV1 -110 493 436 1835 161 10 3 chr4 11439859 11440169 -172848493 - AluJo SINE Alu 0 312 1 1540 233 51 53 chr4 11440169 11440604 -172848058 - LTR26 LTR ERV1 -167 436 1 202 326 53 0 chr4 11440868 11440963 -172847699 - L2 LINE L2 -269 3044 2945 355 306 59 27 chr4 11440987 11441206 -172847456 + L2 LINE L2 2962 3187 -85 217 357 62 23 chr4 11441279 11441400 -172847262 + L2 LINE L2 3173 3301 -12 1921 153 0 3 chr4 11441400 11441708 -172846954 + AluJb SINE Alu 1 307 -5 233 203 65 130 chr4 11441863 11441986 -172846676 - L1ME3A LINE L1 -17 6153 6039 1858 93 3 68 chr4 11442097 11442418 -172846244 + AluSq SINE Alu 8 307 -6 899 293 46 16 chr4 11442597 11443170 -172845492 - L1ME LINE L1 -479 5691 5100 2088 128 9 23 chr4 11443175 11443518 -172845144 + THE1B LTR MaLR 1 338 -26 1393 137 18 18 chr4 11443518 11443745 -172844917 + AluSx SINE Alu 64 290 -22 780 108 234 0 chr4 11443749 11443907 -172844755 - Ricksha DNA DNA -126 2728 2534 2859 136 36 51 chr4 11443914 11444303 -172844359 - Ricksha DNA DNA -385 2861 2483 2103 115 0 13 chr4 11444303 11444607 -172844055 + AluSx SINE Alu 3 302 -10 2859 136 36 51 chr4 11444607 11444829 -172843833 - Ricksha DNA DNA -763 2483 2259 1474 123 4 41 chr4 11444819 11445063 -172843599 - Ricksha DNA DNA -1302 1944 1710 * 556 144 0 27 chr4 11445049 11445160 -172843502 - Ricksha DNA DNA -3131 115 8 * 538 167 65 51 chr4 11445166 11445304 -172843358 - MLT1D LTR MaLR -363 142 3 1015 214 58 69 chr4 11446091 11446484 -172842178 + MLT1D LTR MaLR 4 392 -113 221 276 86 9 chr4 11446598 11446703 -172841959 + L2 LINE L2 2228 2340 -974 290 239 15 0 chr4 11446992 11447059 -172841603 + MIR SINE MIR 82 149 -113 329 155 17 0 chr4 11447221 11447279 -172841383 + LTR16A1 LTR ERVL 398 456 -1 262 80 40 0 chr4 11447425 11447475 -172841187 + CT-rich Low_complexity Low_complexity 2 53 0 2172 127 0 0 chr4 11448461 11448769 -172839893 + AluSq SINE Alu 1 308 -5 291 262 60 0 chr4 11449050 11449134 -172839528 + GA-rich Low_complexity Low_complexity 5 93 0 417 292 48 30 chr4 11450535 11450599 -172838063 + MIR SINE MIR 18 79 -183 2221 139 50 6 chr4 11450599 11450958 -172837704 - THE1C LTR MaLR 0 375 1 417 292 48 30 chr4 11450958 11451061 -172837601 + MIR SINE MIR 79 188 -74 202 246 108 0 chr4 11453515 11453580 -172835082 - MIR3 SINE MIR -52 156 85 1211 234 170 57 chr4 11453759 11454289 -172834373 + MLT1E LTR MaLR 2 591 -2 217 349 63 24 chr4 11454761 11454887 -172833775 - MIR3 SINE MIR -20 188 58 226 344 0 0 chr4 11454934 11454995 -172833667 + polypurine Low_complexity Low_complexity 5 65 0 676 303 48 4 chr4 11455065 11455296 -172833366 - MIR SINE MIR -3 259 19 199 250 42 0 chr4 11455474 11455522 -172833140 + L2 LINE L2 3241 3290 -23 1802 141 0 17 chr4 11455712 11456002 -172832660 + AluSx SINE Alu 18 302 -10 228 330 59 8 chr4 11456010 11456128 -172832534 - MER67A LTR ERV1 -17 526 403 2032 137 0 13 chr4 11456132 11456447 -172832215 - AluSx SINE Alu -1 311 1 1525 147 139 8 chr4 11456448 11456706 -172831956 - AluJo SINE Alu -6 296 5 1214 217 11 22 chr4 11456721 11456998 -172831664 - L1PA15 LINE L1 -1 6164 5891 209 211 18 0 chr4 11457059 11457116 -172831546 + (CACCC)n Simple_repeat Simple_repeat 4 61 0 1446 102 9 13 chr4 11458082 11458308 -172830354 + MSTA LTR MaLR 204 428 0 393 359 46 30 chr4 11458315 11458619 -172830043 + L1MEc LINE L1 168 552 -5653 3246 100 105 45 chr4 11458830 11458964 -172829698 - LTR61 LTR ERV1 0 595 471 2297 74 0 0 chr4 11458964 11459271 -172829391 - AluY SINE Alu 0 307 1 3246 100 105 45 chr4 11459271 11459696 -172828966 - LTR61 LTR ERV1 -124 471 1 34 24 0 0 chr4 11459774 11459815 -172828847 + AT_rich Low_complexity Low_complexity 1 41 0 201 74 0 0 chr4 11459831 11459858 -172828804 + (A)n Simple_repeat Simple_repeat 1 27 0 1645 157 144 131 chr4 11460289 11460915 -172827747 - MER51A LTR ERV1 0 634 1 348 342 75 5 chr4 11460995 11461194 -172827468 + MER113 DNA MER1_type? 1 213 -308 443 241 84 2 chr4 11461228 11461388 -172827274 + MIR SINE MIR 1 171 -62 261 242 0 0 chr4 11461665 11461727 -172826935 + Tigger3(Golem) DNA MER2_type 5 66 -2963 602 88 8 96 chr4 11461727 11461852 -172826810 + MER4A LTR ERV1 29 142 -522 4553 104 7 35 chr4 11461860 11462541 -172826121 - MER4A LTR ERV1 -2 662 1 1595 182 12 38 chr4 11462563 11462909 -172825753 + Tigger3(Golem) DNA MER2_type 373 709 -2320 319 261 180 0 chr4 11462913 11463018 -172825644 + Tigger3(Golem) DNA MER2_type 664 788 -2241 2855 175 9 30 chr4 11463018 11463583 -172825079 - LTR8 LTR ERV1 0 691 139 1920 87 52 13 chr4 11463583 11464111 -172824551 - MER4A LTR ERV1 0 664 1 812 105 0 59 chr4 11464111 11464262 -172824400 - LTR8 LTR ERV1 -549 142 1 1649 151 38 0 chr4 11464262 11464549 -172824113 + Tigger3(Golem) DNA MER2_type 785 1082 -1947 608 184 0 0 chr4 11464549 11464663 -172823999 - LTR8A LTR ERV1 0 727 614 6176 139 95 112 chr4 11464663 11466382 -172822280 + pTR5 LTR ERV1 744 2433 -5 2767 165 46 28 chr4 11466384 11466857 -172821805 - LTR8A LTR ERV1 -103 624 135 2204 81 0 3 chr4 11466857 11467185 -172821477 + AluSx SINE Alu 1 327 0 2767 165 46 28 chr4 11467185 11467323 -172821339 - LTR8A LTR ERV1 -592 135 1 1869 182 40 109 chr4 11467323 11467925 -172820737 + Tigger3(Golem) DNA MER2_type 1079 1638 -1391 3508 67 7 7 chr4 11467925 11468373 -172820289 + LTR7 LTR ERV1 1 448 -2 19570 115 33 25 chr4 11468375 11472458 -172816204 + HERVH LTR ERV1 1 3992 -3721 3965 146 8 1 chr4 11472461 11473119 -172815543 + HERVH LTR ERV1 4488 5149 -2564 1223 128 20 0 chr4 11473138 11473342 -172815320 + HERVH LTR ERV1 5612 5819 -1894 * 2192 98 45 3 chr4 11473340 11473716 -172814946 + HERVH LTR ERV1 7322 7713 0 3532 56 14 5 chr4 11473716 11474160 -172814502 + LTR7 LTR ERV1 1 448 -2 3677 157 40 11 chr4 11474186 11474932 -172813730 + Tigger3(Golem) DNA MER2_type 1646 2413 -616 246 105 0 0 chr4 11474934 11474972 -172813690 + AluJb SINE Alu 21 58 -75 306 158 24 49 chr4 11474978 11475060 -172813602 + MER50 LTR ERV1 7 86 -648 4246 116 36 25 chr4 11475099 11475847 -172812815 - MER4E LTR ERV1 -21 758 3 2606 216 47 8 chr4 11475849 11476470 -172812192 + MER50 LTR ERV1 83 727 -7 1045 144 214 19 chr4 11476475 11476690 -172811972 + AluJb SINE Alu 53 309 -3 1760 198 122 25 chr4 11476690 11477241 -172811421 + Tigger3(Golem) DNA MER2_type 2425 3028 -1 1764 171 10 10 chr4 11479519 11479823 -172808839 + AluJo SINE Alu 1 304 -8 208 348 37 37 chr4 11480999 11481134 -172807528 - L2 LINE L2 -292 3021 2887 361 273 108 14 chr4 11484241 11484380 -172804282 + L2 LINE L2 2920 3071 -201 229 349 0 0 chr4 11484453 11484536 -172804126 + L1MC5 LINE L1 7711 7793 -168 207 250 19 0 chr4 11484708 11484760 -172803902 + L2 LINE L2 3142 3194 -78 1814 147 33 3 chr4 11488788 11489088 -172799574 + AluSq SINE Alu 1 309 -4 216 333 18 36 chr4 11489757 11489868 -172798794 - MIR3 SINE MIR -54 154 46 2197 154 6 3 chr4 11491334 11491691 -172796971 - L1PA16 LINE L1 -11 6155 5798 1345 158 40 62 chr4 11491882 11492282 -172796380 - MER4B-int LTR ERV1 -5523 1235 845 895 118 0 0 chr4 11492363 11492490 -172796172 - AluJb SINE Alu -185 127 1 5210 139 33 12 chr4 11492495 11493397 -172795265 - MER4B-int LTR ERV1 -2692 4066 3146 539 301 62 40 chr4 11493397 11493623 -172795039 - MIR SINE MIR -11 251 21 268 379 75 0 chr4 11494019 11494193 -172794469 + MIR SINE MIR 28 214 -48 952 140 33 0 chr4 11494734 11494884 -172793778 - FRAM SINE Alu -12 164 10 306 95 19 3 chr4 11495650 11495869 -172792793 + AluSx SINE Alu 1 295 -7 1842 163 0 3 chr4 11495869 11496164 -172792498 - AluJb SINE Alu -18 294 1 205 342 38 0 chr4 11496611 11496690 -172791972 - L2 LINE L2 0 3272 3191 207 314 48 32 chr4 11496957 11497081 -172791581 - MIR SINE MIR -14 248 123 327 169 0 0 chr4 11497364 11497435 -172791227 + (TG)n Simple_repeat Simple_repeat 1 71 0 186 326 11 22 chr4 11498516 11498605 -172790057 + MIR SINE MIR 20 107 -155 386 295 20 67 chr4 11498663 11498812 -172789850 - MIR SINE MIR -19 243 102 183 229 21 0 chr4 11498812 11498860 -172789802 - MIR SINE MIR -103 159 111 307 215 9 47 chr4 11499321 11499428 -172789234 + CT-rich Low_complexity Low_complexity 1 103 0 285 286 76 0 chr4 11503255 11503374 -172785288 + (CATG)n Simple_repeat Simple_repeat 1 128 0 273 360 0 0 chr4 11503715 11503801 -172784861 - L2 LINE L2 -1 3271 3186 316 327 73 7 chr4 11504003 11504153 -172784509 - MARNA DNA Mariner -30 556 397 192 40 0 0 chr4 11505015 11505040 -172783622 + (CCTG)n Simple_repeat Simple_repeat 2 26 0 186 359 126 0 chr4 11506117 11506220 -172782442 - MIR SINE MIR -114 148 33 215 292 0 0 chr4 11506798 11506869 -172781793 + MIR SINE MIR 63 134 -74 207 171 0 0 chr4 11507733 11507768 -172780894 + (TGAG)n Simple_repeat Simple_repeat 4 38 0 1903 138 0 14 chr4 11508121 11508412 -172780250 - AluJb SINE Alu -25 287 1 180 0 0 0 chr4 11509152 11509172 -172779490 + (T)n Simple_repeat Simple_repeat 1 20 0 266 227 61 0 chr4 11510904 11510970 -172777692 - HsTC2 DNA Tc2 -4 1894 1825 21 0 0 0 chr4 11512008 11512029 -172776633 + GC_rich Low_complexity Low_complexity 1 21 0 244 219 68 14 chr4 11513688 11513761 -172774901 + MIR SINE MIR 46 122 -140 1108 197 58 39 chr4 11513903 11514012 -172774650 - MER33 DNA MER1_type -2261 324 219 2397 74 0 0 chr4 11514012 11514310 -172774352 - AluY SINE Alu -13 298 1 1108 197 58 39 chr4 11514310 11514510 -172774152 - MER33 DNA MER1_type -2366 219 9 1148 271 75 29 chr4 11514908 11515292 -172773370 + MLT1C LTR MaLR 1 409 -58 2256 95 7 0 chr4 11515292 11515588 -172773074 - AluSg SINE Alu -12 298 1 1148 271 75 29 chr4 11515588 11515646 -172773016 + MLT1C LTR MaLR 409 463 -4 417 237 22 74 chr4 11515808 11515943 -172772719 - MIR SINE MIR -29 233 106 209 359 106 0 chr4 11517048 11517190 -172771472 - MIR SINE MIR -67 195 39 350 330 26 0 chr4 11518454 11518569 -172770093 + MIR SINE MIR 75 192 -70 212 394 44 22 chr4 11519084 11519221 -172769441 + MIR SINE MIR 91 230 -32 23 0 0 0 chr4 11519360 11519383 -172769279 + AT_rich Low_complexity Low_complexity 1 23 0 863 144 0 8 chr4 11519383 11519515 -172769147 - FLAM_C SINE Alu -1 132 2 305 285 149 14 chr4 11521055 11521269 -172767393 - MER76 LTR ERV -444 244 2 428 281 36 36 chr4 11521539 11521735 -172766927 + MER3 DNA MER1_type 14 209 0 214 370 11 22 chr4 11521914 11522006 -172766656 - L2 LINE L2 0 3272 3182 1969 85 0 4 chr4 11523720 11523980 -172764682 - AluSq SINE Alu -14 299 41 318 236 0 14 chr4 11524441 11524513 -172764149 - MIR SINE MIR -64 144 74 782 147 17 17 chr4 11524546 11524723 -172763939 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 523 170 33 0 chr4 11524744 11524897 -172763765 + (TCCA)n Simple_repeat Simple_repeat 1 158 0 227 194 183 32 chr4 11526257 11526350 -172762312 + MIR SINE MIR 109 215 -47 210 222 0 0 chr4 11527880 11527934 -172760728 + (TG)n Simple_repeat Simple_repeat 1 54 0 205 393 40 0 chr4 11527955 11528105 -172760557 - L2 LINE L2 -192 3080 2925 889 192 7 9 chr4 11528252 11528714 -172759948 + (CTCA)n Simple_repeat Simple_repeat 1 461 0 825 138 0 0 chr4 11530237 11530382 -172758280 + (CTCA)n Simple_repeat Simple_repeat 3 147 0 231 226 24 60 chr4 11531078 11531162 -172757500 + L2 LINE L2 2900 2980 -292 310 219 24 137 chr4 11531727 11531932 -172756730 - MER53 DNA DNA 0 189 8 2363 87 0 0 chr4 11532396 11532696 -172755966 - AluSc SINE Alu -9 300 1 311 333 115 19 chr4 11533257 11533413 -172755249 + MIR SINE MIR 6 176 -86 262 346 74 0 chr4 11534048 11534210 -172754452 - L2 LINE L2 -174 3098 2925 327 306 101 34 chr4 11535707 11535975 -172752687 - L2 LINE L2 -92 3180 2895 318 267 56 0 chr4 11536525 11536615 -172752047 - MIR SINE MIR -120 142 48 488 266 145 5 chr4 11536677 11536884 -172751778 + ORSL DNA AcHobo 1 236 -39 243 245 38 33 chr4 11537488 11537608 -172751054 - MIR SINE MIR -64 144 21 264 331 16 16 chr4 11538291 11538415 -172750247 - L2 LINE L2 -212 3060 2937 972 225 80 37 chr4 11539697 11540022 -172748640 - MLT1B LTR MaLR -48 342 4 2121 98 0 53 chr4 11540965 11541283 -172747379 - AluSx SINE Alu -11 301 1 1636 211 107 31 chr4 11541395 11541808 -172746854 + MER65A LTR ERV1 1 444 -1 330 269 35 58 chr4 11541810 11541942 -172746720 - L1MC4a LINE L1 -1087 6721 6592 1644 115 48 83 chr4 11541942 11542256 -172746406 + AluSg1 SINE Alu 1 303 -6 330 269 35 58 chr4 11542256 11542294 -172746368 - L1MC4a LINE L1 -1216 6592 6555 318 345 79 0 chr4 11542832 11542971 -172745691 + HAL1 LINE L1 1114 1263 -1244 1993 96 0 38 chr4 11542971 11543293 -172745369 + AluSx SINE Alu 1 311 0 353 355 103 34 chr4 11543388 11543573 -172745089 - MIR SINE MIR 0 262 56 2451 58 0 13 chr4 11543573 11543886 -172744776 + AluY SINE Alu 1 309 -2 353 355 103 34 chr4 11543886 11543934 -172744728 - MIR SINE MIR -206 56 13 2278 81 0 0 chr4 11544623 11544918 -172743744 + AluSg SINE Alu 1 295 -15 932 231 80 37 chr4 11545348 11545673 -172742989 - MLT1B LTR MaLR -48 342 4 576 70 0 0 chr4 11746313 11746399 -172542263 + (TC)n Simple_repeat Simple_repeat 1 86 0 291 28 0 0 chr4 11747597 11747633 -172541029 + (TG)n Simple_repeat Simple_repeat 1 36 0 2065 109 4 0 chr4 11748258 11748533 -172540129 - AluSx SINE Alu -36 276 1 862 235 40 0 chr4 11750311 11750511 -172538151 + MER58A DNA MER1_type 1 208 -16 435 59 176 0 chr4 11751742 11751810 -172536852 + MADE1 DNA Mariner 1 80 0 609 139 10 0 chr4 11752344 11752445 -172536217 - AluSg/x SINE Alu 0 309 208 21410 64 1 1 chr4 11752546 11755151 -172533511 + HERVE LTR ERV1 4439 7042 -771 1968 251 87 33 chr4 11755280 11756001 -172532661 + L2 LINE L2 1622 2381 -933 611 256 77 93 chr4 11756352 11756476 -172532186 - L1MCc LINE L1 -5921 502 377 1775 76 69 65 chr4 11756476 11756753 -172531909 + AluSg SINE Alu 1 278 -32 1122 50 6 12 chr4 11756754 11756914 -172531748 + (GAAA)n Simple_repeat Simple_repeat 2 160 0 611 256 77 93 chr4 11756914 11757279 -172531383 - L1MCc LINE L1 -6045 378 19 355 359 30 6 chr4 11757389 11757556 -172531106 - L1MEc LINE L1 -4658 1738 1568 23 78 0 0 chr4 11757666 11757717 -172530945 + AT_rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr4 11757946 11757970 -172530692 + AT_rich Low_complexity Low_complexity 1 24 0 2032 122 3 53 chr4 11757980 11758300 -172530362 - AluSg SINE Alu -6 304 1 21 36 0 0 chr4 11759901 11759929 -172528733 + AT_rich Low_complexity Low_complexity 1 28 0 750 206 0 0 chr4 11760150 11760276 -172528386 - FLAM_C SINE Alu -17 126 1 3183 209 25 80 chr4 11760490 11761515 -172527147 + LTR5 LTR ERVK 1 969 0 34105 189 14 15 chr4 11761515 11768939 -172519723 + HERVK LTR ERVK 1 7289 -128 2642 224 21 79 chr4 11769051 11770023 -172518639 + LTR5 LTR ERVK 55 969 0 439 263 96 13 chr4 11770337 11770493 -172518169 + MIR SINE MIR 79 247 -15 309 272 76 0 chr4 11770522 11770614 -172518048 + L2 LINE L2 3162 3260 -12 510 247 34 21 chr4 11770977 11771174 -172517488 + MIR SINE MIR 23 217 -45 2196 125 0 0 chr4 11771198 11771494 -172517168 + AluSq SINE Alu 1 296 -17 3417 130 39 2 chr4 11771581 11772088 -172516574 + MER1A DNA MER1_type 1 526 -1 719 181 36 104 chr4 11772105 11772254 -172516408 + MER3 DNA MER1_type 4 135 -74 2109 128 3 0 chr4 11772254 11772543 -172516119 - AluSx SINE Alu -16 296 7 719 181 36 104 chr4 11772543 11772614 -172516048 + MER3 DNA MER1_type 135 209 0 679 237 95 0 chr4 11772763 11772953 -172515709 - MIR SINE MIR -6 256 49 5580 73 1 1 chr4 11773669 11774369 -172514293 + HERVE LTR ERV1 7113 7812 -1 1637 221 47 44 chr4 11774458 11774866 -172513796 + LTR2 LTR ERV1 41 449 0 4161 79 0 4 chr4 11774866 11775420 -172513242 + HERVH LTR ERV1 3442 3993 -3720 4316 153 1 1 chr4 11775422 11776084 -172512578 + HERVH LTR ERV1 4488 5149 -2564 1367 118 43 0 chr4 11776085 11776296 -172512366 + HERVH LTR ERV1 5600 5819 -1894 2441 98 45 13 chr4 11776296 11776674 -172511988 + HERVH LTR ERV1 7324 7713 0 2479 93 128 5 chr4 11776675 11777073 -172511589 + LTR7 LTR ERV1 2 448 -2 2323 96 3 0 chr4 11777085 11777387 -172511275 - AluSp SINE Alu -8 305 3 563 242 27 32 chr4 11777397 11777583 -172511079 - MLT1D LTR MaLR -320 185 1 219 350 34 17 chr4 11778763 11778880 -172509782 - L2 LINE L2 -15 3298 3180 1866 155 7 36 chr4 11778918 11779227 -172509435 + AluSx SINE Alu 1 300 -12 378 0 0 0 chr4 11779513 11779555 -172509107 + (CAT)n Simple_repeat Simple_repeat 3 44 0 730 160 80 8 chr4 11779665 11779790 -172508872 + THE1B LTR MaLR 196 329 -35 258 207 0 0 chr4 11780786 11780844 -172507818 + GA-rich Low_complexity Low_complexity 2 59 0 4148 289 25 38 chr4 11781749 11783403 -172505259 + L1PBa LINE L1 6 1639 -5224 743 189 10 136 chr4 11783380 11783586 -172505076 + L1PBb LINE L1 14 193 -6011 * 1431 189 0 20 chr4 11783589 11783843 -172504819 + L1M1 LINE L1 554 802 -6763 1117 103 59 49 chr4 11783836 11784039 -172504623 + THE1C-int LTR MaLR 1376 1580 0 * 1604 176 65 49 chr4 11784039 11784408 -172504254 + THE1C LTR MaLR 1 375 0 330 252 0 23 chr4 11785465 11785596 -172503066 + (TTA)n Simple_repeat Simple_repeat 2 129 0 252 120 0 0 chr4 11787253 11787303 -172501359 + (CA)n Simple_repeat Simple_repeat 1 50 0 10632 125 3 6 chr4 11787359 11789511 -172499151 + L1PA8A LINE L1 3700 5847 -284 2071 149 0 3 chr4 11789632 11789940 -172498722 + AluSg SINE Alu 1 307 -3 302 258 50 75 chr4 11789995 11790154 -172498508 - L2 LINE L2 0 3313 3159 982 207 69 0 chr4 11790313 11790530 -172498132 - LTR16A1 LTR ERVL 0 457 226 356 250 176 0 chr4 11791172 11791308 -172497354 - MIR SINE MIR -72 190 31 1375 176 71 15 chr4 11791329 11791596 -172497066 - AluJo SINE Alu -30 282 1 534 123 0 0 chr4 11791606 11791679 -172496983 - Alu SINE Alu -14 297 225 316 319 88 38 chr4 11791876 11792114 -172496548 - MLT1K LTR MaLR -319 269 20 1091 108 0 13 chr4 11792245 11792402 -172496260 + AluSp/q SINE Alu 159 313 0 840 147 0 29 chr4 11792506 11792642 -172496020 + AluJo SINE Alu 2 133 -169 1340 184 157 0 chr4 11792647 11792908 -172495754 + AluSx SINE Alu 1 302 0 614 211 0 0 chr4 11792914 11793023 -172495639 + AluJo SINE Alu 141 249 -63 253 267 47 0 chr4 11793045 11793131 -172495531 - L1MC4 LINE L1 -1339 6703 6614 246 272 0 22 chr4 11793099 11793191 -172495471 + L1MC4 LINE L1 6614 6703 -1339 * 568 269 38 0 chr4 11793245 11793405 -172495257 + MER104 DNA Tc2 11 176 -4 2161 125 0 0 chr4 11794284 11794571 -172494091 + AluSx SINE Alu 1 287 -25 620 62 31 0 chr4 11794571 11794667 -172493995 + (TATAA)n Simple_repeat Simple_repeat 4 102 0 1762 189 0 22 chr4 11794805 11795123 -172493539 + AluJo SINE Alu 1 311 -1 207 322 69 0 chr4 11795192 11795279 -172493383 - MIR SINE MIR -74 188 96 1491 180 0 16 chr4 11795299 11795549 -172493113 + AluJb SINE Alu 1 246 -66 2385 160 48 14 chr4 11795549 11795986 -172492676 + MER66B LTR ERV1 1 452 -34 3976 118 90 94 chr4 11795987 11797372 -172491290 + pTR5 LTR ERV1 743 2438 0 315 172 0 47 chr4 11797405 11797469 -172491193 + AluJb SINE Alu 238 298 -4 2039 168 35 34 chr4 11797585 11798060 -172490602 + L1MB7 LINE L1 5651 6127 -57 1608 163 0 8 chr4 11798069 11798321 -172490341 - AluJb SINE Alu -27 285 36 329 140 18 0 chr4 11798421 11798478 -172490184 - AluS SINE Alu -240 60 3 303 146 0 0 chr4 11798624 11798679 -172489983 + (GGGA)n Simple_repeat Simple_repeat 3 57 0 2160 112 17 10 chr4 11798985 11799281 -172489381 - AluSg SINE Alu -12 298 1 1120 153 14 28 chr4 11799358 11799574 -172489088 + MER73 LTR ERVL 432 644 0 211 284 0 78 chr4 11800060 11800117 -172488545 - MER5B DNA MER1_type -81 97 50 932 150 0 0 chr4 11800117 11800250 -172488412 + FLAM_A SINE Alu 1 133 0 211 284 0 78 chr4 11800250 11800294 -172488368 - MER5B DNA MER1_type -128 50 4 235 191 88 44 chr4 11800308 11800376 -172488286 + MLT1F LTR MaLR 1 71 -471 * 344 216 0 0 chr4 11800373 11800447 -172488215 - MER66B LTR ERV1 -412 74 1 914 123 0 8 chr4 11800808 11800938 -172487724 + FLAM_C SINE Alu 1 129 -4 1877 141 3 49 chr4 11801123 11801302 -172487360 - AluSx SINE Alu -1 311 152 2412 87 0 3 chr4 11801302 11801602 -172487060 - AluY SINE Alu -12 299 1 1877 141 3 49 chr4 11801602 11801748 -172486914 - AluSx SINE Alu -160 152 1 474 241 16 88 chr4 11802474 11802610 -172486052 + MER5B DNA MER1_type 2 138 -51 1950 154 0 3 chr4 11802610 11802908 -172485754 - AluJo SINE Alu -13 299 3 474 241 16 88 chr4 11802908 11802957 -172485705 + MER5B DNA MER1_type 138 189 0 371 280 28 51 chr4 11802975 11803161 -172485501 - MER5A DNA MER1_type -6 172 2 1190 223 113 22 chr4 11803524 11803595 -172485067 + MLT1C LTR MaLR 6 69 -398 2066 151 3 0 chr4 11803595 11803893 -172484769 + AluSx SINE Alu 1 299 -13 1190 223 113 22 chr4 11803893 11804230 -172484432 + MLT1C LTR MaLR 69 451 -16 2285 111 0 0 chr4 11804284 11804581 -172484081 + AluSp SINE Alu 1 297 -16 1927 120 7 57 chr4 11804788 11805146 -172483516 + AluSq SINE Alu 1 343 0 257 182 0 0 chr4 11805329 11805373 -172483289 + AluJo SINE Alu 1 44 -258 3902 126 103 48 chr4 11805418 11805863 -172482799 + LTR1 LTR ERV1 1 505 -280 1797 87 0 4 chr4 11805863 11806092 -172482570 + AluY SINE Alu 16 243 -68 3902 126 103 48 chr4 11806092 11806390 -172482272 + LTR1 LTR ERV1 505 785 0 1508 166 0 66 chr4 11806392 11806681 -172481981 + AluJo SINE Alu 40 309 -3 1916 143 0 26 chr4 11807222 11807529 -172481133 + AluSx SINE Alu 1 299 -13 248 0 31 0 chr4 11807538 11807570 -172481092 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 355 43 0 0 chr4 11807863 11807955 -172480707 + AluSp/q SINE Alu 239 330 0 1768 142 32 11 chr4 11808035 11808316 -172480346 + AluSx SINE Alu 3 289 -23 2102 135 23 0 chr4 11809593 11809897 -172478765 + AluSx SINE Alu 1 311 -1 222 258 93 10 chr4 11810006 11810103 -172478559 + MIR SINE MIR 106 210 -52 248 290 29 22 chr4 11810312 11810450 -172478212 + L1MB3 LINE L1 6038 6176 -7 872 176 11 43 chr4 11815475 11815663 -172472999 - LTR5 LTR ERVK 0 969 788 2800 201 16 48 chr4 11815842 11816508 -172472154 - LTR5 LTR ERVK -324 645 1 244 326 23 6 chr4 11817917 11818089 -172470573 + L1MB3 LINE L1 6009 6183 0 317 230 0 30 chr4 11818995 11819095 -172469567 + (TAA)n Simple_repeat Simple_repeat 3 99 0 534 314 37 8 chr4 11819817 11820062 -172468600 + LTR16A LTR ERVL 199 450 0 2155 143 0 0 chr4 11820603 11820903 -172467759 - AluSc SINE Alu -9 300 1 856 151 0 146 chr4 11821302 11821501 -172467161 - AluSg/x SINE Alu -18 294 125 228 193 4 0 chr4 11821692 11821736 -172466926 - L2 LINE L2 -34 3277 3202 1872 174 3 0 chr4 11821808 11822102 -172466560 - AluSx SINE Alu -17 295 1 406 302 45 26 chr4 11822597 11822865 -172465797 + L1ME2 LINE L1 5706 5978 -186 874 142 43 21 chr4 11822866 11823007 -172465655 + AluSq/x SINE Alu 6 149 -163 1580 157 0 41 chr4 11823011 11823304 -172465358 + L1PA16 LINE L1 5884 6164 -2 3318 212 29 51 chr4 11823304 11823624 -172465038 + L1MA9 LINE L1 5323 5648 -664 326 74 19 0 chr4 11823624 11823678 -172464984 + (TA)n Simple_repeat Simple_repeat 1 55 0 3318 212 29 51 chr4 11823678 11824360 -172464302 + L1MA9 LINE L1 5648 6303 -9 497 311 68 27 chr4 11824415 11824637 -172464025 + MLT1J LTR MaLR 225 455 -56 22 35 0 0 chr4 11824907 11824936 -172463726 + AT_rich Low_complexity Low_complexity 1 29 0 187 224 184 13 chr4 11827110 11827186 -172461476 - L2 LINE L2 -5 3308 3220 234 62 0 0 chr4 11827512 11827544 -172461118 + (TG)n Simple_repeat Simple_repeat 1 32 0 236 287 189 25 chr4 11827873 11828000 -172460662 - MIR3 SINE MIR -67 141 6 25 51 0 0 chr4 11828194 11828233 -172460429 + AT_rich Low_complexity Low_complexity 1 39 0 355 323 31 57 chr4 11828537 11828729 -172459933 + MIR3 SINE MIR 5 191 -17 899 231 57 9 chr4 11829108 11829424 -172459238 + L1MA10 LINE L1 5987 6317 -17 2245 88 3 0 chr4 11830209 11830517 -172458145 + AluSx SINE Alu 1 309 0 2226 119 7 10 chr4 11831134 11831444 -172457218 - AluSx SINE Alu -2 310 2 1476 174 45 77 chr4 11831642 11831952 -172456710 + AluJo SINE Alu 1 300 -12 643 256 96 27 chr4 11832113 11832332 -172456330 + MIR SINE MIR 29 262 0 595 139 0 30 chr4 11832557 11832658 -172456004 - AluS SINE Alu -214 99 2 540 187 27 73 chr4 11832662 11832812 -172455850 - MLT1C LTR MaLR -284 183 41 1516 168 31 58 chr4 11832831 11833122 -172455540 - AluJo SINE Alu -11 301 19 21 36 0 0 chr4 11833333 11833361 -172455301 + AT_rich Low_complexity Low_complexity 1 28 0 2178 111 7 0 chr4 11833796 11834085 -172454577 + AluSc SINE Alu 1 291 -18 2178 106 3 10 chr4 11834179 11834481 -172454181 + AluSx SINE Alu 1 300 -12 313 302 103 9 chr4 11835585 11835701 -172452961 + L2 LINE L2 3184 3310 -3 206 104 42 83 chr4 11837899 11837947 -172450715 - MIR SINE MIR -85 177 132 869 248 65 0 chr4 11837968 11838182 -172450480 + MIR SINE MIR 13 240 -22 810 239 90 44 chr4 11838228 11838674 -172449988 - L2 LINE L2 -50 3263 2777 2174 128 0 0 chr4 11840109 11840406 -172448256 + AluSx SINE Alu 1 297 -15 287 274 212 28 chr4 11841309 11841667 -172446995 + LTR33A LTR ERVL 84 507 -16 2128 136 10 0 chr4 11841680 11841989 -172446673 - AluSx SINE Alu 0 312 1 709 183 32 8 chr4 11842515 11842641 -172446021 - FLAM_A SINE Alu -4 129 1 322 268 74 63 chr4 11842932 11843086 -172445576 + MIR SINE MIR 26 177 -68 2028 107 52 14 chr4 11843163 11843296 -172445366 + AluSx SINE Alu 1 128 -184 2056 157 0 0 chr4 11843296 11843596 -172445066 + AluSq SINE Alu 1 300 -13 2028 107 52 14 chr4 11843596 11843753 -172444909 + AluSx SINE Alu 128 302 -10 520 307 79 0 chr4 11843824 11844039 -172444623 - L1MD2 LINE L1 -365 5994 5763 256 190 6 20 chr4 11845812 11845886 -172442776 + MIR3 SINE MIR 81 154 -54 243 313 137 0 chr4 11846037 11846168 -172442494 - MIR SINE MIR -32 230 82 1993 139 3 19 chr4 11846445 11846761 -172441901 + AluJb SINE Alu 1 311 -1 1487 158 15 11 chr4 11846936 11847209 -172441453 + L1PA8A LINE L1 5858 6131 0 366 80 0 0 chr4 11847211 11847261 -172441401 + (CATA)n Simple_repeat Simple_repeat 4 53 0 392 214 10 10 chr4 11847481 11847579 -172441083 - L1M3 LINE L1 -432 5748 5651 * 443 300 71 74 chr4 11847578 11847934 -172440728 - L1M3 LINE L1 -766 5380 5021 245 380 8 4 chr4 11848064 11848298 -172440364 - L1M3 LINE L1 -1192 4954 4720 183 188 0 0 chr4 11848378 11848426 -172440236 + (CA)n Simple_repeat Simple_repeat 1 48 0 348 130 0 0 chr4 11850903 11850972 -172437690 + (CA)n Simple_repeat Simple_repeat 1 69 0 336 181 0 0 chr4 11853004 11853087 -172435575 + (CA)n Simple_repeat Simple_repeat 1 83 0 350 114 14 0 chr4 11855649 11855719 -172432943 + (CA)n Simple_repeat Simple_repeat 1 71 0 303 193 0 0 chr4 11857751 11857834 -172430828 + (CA)n Simple_repeat Simple_repeat 1 83 0 330 134 0 0 chr4 11860396 11860463 -172428199 + (CA)n Simple_repeat Simple_repeat 1 67 0 303 193 0 0 chr4 11862495 11862578 -172426084 + (CA)n Simple_repeat Simple_repeat 1 83 0 348 130 0 0 chr4 11865139 11865208 -172423454 + (CA)n Simple_repeat Simple_repeat 1 69 0 303 193 0 0 chr4 11867240 11867323 -172421339 + (CA)n Simple_repeat Simple_repeat 1 83 0 311 132 15 0 chr4 11869884 11869952 -172418710 + (CA)n Simple_repeat Simple_repeat 1 69 0 303 193 0 0 chr4 11871985 11872068 -172416594 + (CA)n Simple_repeat Simple_repeat 1 83 0 281 153 14 0 chr4 11874630 11874702 -172413960 + (CA)n Simple_repeat Simple_repeat 1 73 0 273 198 0 0 chr4 11876733 11876814 -172411848 + (CA)n Simple_repeat Simple_repeat 1 81 0 728 284 5 10 chr4 11929019 11929223 -172359439 + L1M3a LINE L1 66 268 -5687 5630 235 17 6 chr4 11929261 11930669 -172357993 - L1P LINE L1 -3253 2893 1470 872 183 34 13 chr4 11930769 11931004 -172357658 + L1MA7 LINE L1 6042 6281 -10 1293 265 6 3 chr4 11931029 11931361 -172357301 + L1MB7 LINE L1 5319 5651 -527 522 230 8 0 chr4 11931374 11931500 -172357162 + L1MB7 LINE L1 5763 5889 -295 706 167 109 23 chr4 11931532 11931706 -172356956 + MLT1F1 LTR MaLR 379 567 0 1618 93 0 22 chr4 11931816 11932041 -172356621 + AluY SINE Alu 35 254 -57 1882 127 65 9 chr4 11932218 11932540 -172356122 - L1MB1 LINE L1 -1 6167 5828 208 409 55 0 chr4 11932638 11932765 -172355897 + MIR3 SINE MIR 11 144 -64 5425 198 30 11 chr4 11933003 11934447 -172354215 + L1P4 LINE L1 4065 5529 -637 2934 120 9 2 chr4 11934547 11935014 -172353648 - L1P LINE L1 -3362 2784 2315 1099 127 18 0 chr4 11935014 11935180 -172353482 - AluSp SINE Alu -144 169 1 1916 218 65 28 chr4 11935263 11935840 -172352822 - L1MA9 LINE L1 -44 6268 5668 227 309 12 0 chr4 11935908 11935989 -172352673 - L1M4c LINE L1 -4585 1799 1718 1781 215 31 0 chr4 11936051 11936376 -172352286 + Tigger7 DNA MER2_type 7 341 -392 25 31 0 0 chr4 11936383 11936415 -172352247 + AT_rich Low_complexity Low_complexity 1 32 0 616 228 49 0 chr4 11936420 11936543 -172352119 + Tigger7 DNA MER2_type 2362 2490 -1 358 228 0 0 chr4 11936548 11936627 -172352035 - L1M4c LINE L1 -4885 1499 1421 3359 154 16 2 chr4 11936732 11937467 -172351195 - L1MA7 LINE L1 -444 5847 5099 3028 180 25 15 chr4 11937511 11937734 -172350928 + L1PA13 LINE L1 1408 1627 -5160 1643 143 110 24 chr4 11937734 11938069 -172350593 + THE1B LTR MaLR 1 364 0 3028 180 25 15 chr4 11938069 11938445 -172350217 + L1PA13 LINE L1 1627 2013 -4774 2348 83 3 3 chr4 11938444 11938756 -172349906 + L1PA5 LINE L1 5685 5996 -158 * 393 314 87 5 chr4 11938856 11939041 -172349621 + MLT1J LTR MaLR 260 459 -52 194 284 45 45 chr4 11939357 11939445 -172349217 + MER5B DNA MER1_type 87 174 -4 213 270 31 119 chr4 11939450 11939609 -172349053 - MIR3 SINE MIR -48 160 16 282 95 0 0 chr4 11940612 11940654 -172348008 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 2565 50 0 0 chr4 11942896 11943193 -172345469 - AluY SINE Alu -9 302 6 444 62 62 0 chr4 11943303 11943368 -172345294 - MER41A LTR ERV1 -88 466 398 473 213 0 46 chr4 11943492 11943600 -172345062 - MER20 DNA MER1_type -4 215 113 216 97 0 0 chr4 11943626 11943657 -172345005 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 689 301 52 43 chr4 11944187 11944749 -172343913 - L1M4 LINE L1 -2828 3816 3250 1090 335 53 60 chr4 11944752 11945276 -172343386 - L2 LINE L2 -256 3057 2542 1783 159 3 32 chr4 11945276 11945590 -172343072 + AluSq SINE Alu 1 305 -8 1090 335 53 60 chr4 11945590 11945885 -172342777 - L2 LINE L2 -771 2542 2246 307 242 23 62 chr4 11946345 11946473 -172342189 + L1ME4a LINE L1 5744 5866 -255 2011 146 7 0 chr4 11946996 11947305 -172341357 + AluSx SINE Alu 1 311 -1 2572 240 141 17 chr4 11947752 11948680 -172339982 - L1M4 LINE L1 -5498 1044 2 687 248 15 84 chr4 11948875 11949145 -172339517 + MLT1G1 LTR MaLR 2 210 -357 4928 187 25 32 chr4 11949150 11950969 -172337693 + L1PA15 LINE L1 4122 5916 -249 1931 116 0 0 chr4 11950969 11951227 -172337435 + AluY SINE Alu 39 296 -15 4928 187 25 32 chr4 11951227 11951476 -172337186 + L1PA15 LINE L1 5916 6165 0 634 231 54 16 chr4 11951537 11951723 -172336939 - L1M4 LINE L1 -1297 4849 4657 2433 64 0 26 chr4 11952273 11952586 -172336076 + AluY SINE Alu 1 305 -6 228 35 0 0 chr4 11952633 11952662 -172336000 + (A)n Simple_repeat Simple_repeat 1 29 0 193 300 0 0 chr4 11953431 11953481 -172335181 - MIR SINE MIR -67 141 92 21 57 0 0 chr4 11953739 11953774 -172334888 + AT_rich Low_complexity Low_complexity 1 35 0 212 324 20 29 chr4 11954137 11954239 -172334423 + MIR SINE MIR 45 145 -63 3012 180 25 4 chr4 11954467 11955027 -172333635 - L1PA16 LINE L1 -9 6157 5586 220 328 41 49 chr4 11955158 11955280 -172333382 - L2 LINE L2 -2 3270 3150 406 235 110 133 chr4 11956158 11956310 -172332352 - Charlie8 DNA MER1_type -1911 506 352 234 0 0 0 chr4 11956310 11956336 -172332326 + (TG)n Simple_repeat Simple_repeat 2 27 0 406 235 110 133 chr4 11956336 11956612 -172332050 - Charlie8 DNA MER1_type -2065 352 88 291 28 0 0 chr4 11956625 11956661 -172332001 + (CA)n Simple_repeat Simple_repeat 1 36 0 204 182 0 0 chr4 11956968 11957012 -172331650 + CT-rich Low_complexity Low_complexity 1 44 0 2047 142 0 3 chr4 11957103 11957405 -172331257 + AluSg SINE Alu 1 301 -9 1451 211 57 72 chr4 11957875 11958388 -172330274 - MLT1D LTR MaLR 0 505 1 5116 258 47 66 chr4 11958889 11960198 -172328464 + L1MB7 LINE L1 6 1272 -5577 2301 82 3 33 chr4 11960198 11960503 -172328159 + AluSp SINE Alu 13 308 -5 5116 258 47 66 chr4 11960503 11961000 -172327662 + L1MB7 LINE L1 1272 1777 -5072 498 187 0 9 chr4 11961003 11961110 -172327552 + L1MB7 LINE L1 1917 2022 -4827 2008 170 26 1 chr4 11961126 11961536 -172327126 + L1MB7 LINE L1 5700 6115 -755 * 2346 335 68 15 chr4 11961535 11962523 -172326139 + L1PBa LINE L1 6 1045 -5818 3215 164 88 87 chr4 11962538 11963528 -172325134 - LTR12 LTR ERV1 -134 1481 3 294 263 0 0 chr4 11963532 11963608 -172325054 + L1PBa LINE L1 1088 1163 -5700 2269 205 78 23 chr4 11963629 11964230 -172324432 + L1MB7 LINE L1 6253 6886 0 1530 174 39 48 chr4 11964735 11965046 -172323616 + AluJb SINE Alu 1 308 -4 26 0 0 0 chr4 11965568 11965594 -172323068 + AT_rich Low_complexity Low_complexity 1 26 0 1521 193 109 3 chr4 11965629 11965984 -172322678 - L1MB7 LINE L1 -1 6168 5785 308 222 51 0 chr4 11965973 11966060 -172322602 + L1MB7 LINE L1 6085 6175 -3 * 4086 230 16 9 chr4 11966315 11967347 -172321315 - L1 LINE L1 -2775 3371 2333 1604 221 19 55 chr4 11967348 11967762 -172320900 - MLT1B LTR MaLR 0 426 2 1899 202 59 51 chr4 11967762 11968301 -172320361 + L1MCa LINE L1 1086 1734 -4692 1577 130 107 4 chr4 11968301 11968563 -172320099 - AluSx SINE Alu -23 289 1 1899 202 59 51 chr4 11968563 11968667 -172319995 + L1MCa LINE L1 1734 1836 -4590 4825 208 16 10 chr4 11968669 11969724 -172318938 + L1 LINE L1 4031 5091 -1055 559 304 146 14 chr4 11969888 11970313 -172318349 + L2 LINE L2 1351 1831 -1483 1431 219 121 38 chr4 11970836 11971634 -172317028 - SATR1 Satellite Satellite -5 864 1 275 178 8 59 chr4 11971812 11971930 -172316732 + (TTA)n Simple_repeat Simple_repeat 1 112 0 27943 107 13 11 chr4 11971985 11976034 -172312628 + HERVE LTR ERV1 1110 5165 -2648 2049 198 103 11 chr4 11976034 11978117 -172310545 - SATR1 Satellite Satellite 0 2274 1 851 225 283 6 chr4 11978147 11978476 -172310186 - SATR1 Satellite Satellite -3 467 48 1386 117 27 31 chr4 11978480 11978703 -172309959 - AluSq SINE Alu -91 222 1 738 223 46 0 chr4 11980595 11980792 -172307870 + MER6B DNA MER2_type 5 210 0 340 207 37 0 chr4 11980897 11980979 -172307683 - MER5B DNA MER1_type -6 172 88 1924 146 0 46 chr4 11981190 11981518 -172307144 - AluSp SINE Alu 0 313 1 1254 223 3 73 chr4 11981704 11981887 -172306775 + L1MA4 LINE L1 5767 5910 -390 1679 164 0 4 chr4 11981887 11982168 -172306494 + AluSx SINE Alu 1 280 -32 1254 223 3 73 chr4 11982168 11982369 -172306293 + L1MA4 LINE L1 5910 6124 -176 2291 96 3 3 chr4 11982455 11982768 -172305894 - AluSp SINE Alu 0 313 1 1862 257 30 9 chr4 11982811 11983807 -172304855 + L1MB3 LINE L1 4814 5831 -352 1828 147 3 20 chr4 11983807 11984107 -172304555 + AluSx SINE Alu 1 295 -17 1738 219 100 23 chr4 11984224 11985023 -172303639 - SATR1 Satellite Satellite -20 860 1 226 205 17 43 chr4 11985082 11985199 -172303463 + (TTA)n Simple_repeat Simple_repeat 1 114 0 311 261 13 26 chr4 11985229 11985382 -172303280 + (TTA)n Simple_repeat Simple_repeat 1 151 0 2105 203 117 9 chr4 11985391 11987504 -172301158 - SATR1 Satellite Satellite -1 2342 1 26415 107 12 13 chr4 11987858 11991700 -172296962 + HERVE LTR ERV1 1108 4945 -2868 1882 185 104 31 chr4 11991706 11992479 -172296183 - SATR1 Satellite Satellite 0 828 1 790 234 280 3 chr4 11992509 11992838 -172295824 - SATR1 Satellite Satellite -3 467 48 1387 128 27 14 chr4 11992842 11993061 -172295601 - AluSq SINE Alu -91 222 1 678 234 46 0 chr4 11994952 11995149 -172293513 + MER6B DNA MER2_type 5 210 0 303 246 97 9 chr4 11995252 11995366 -172293296 - MER5B DNA MER1_type -5 173 50 2015 130 0 40 chr4 11995550 11995874 -172292788 - AluSp SINE Alu -2 311 1 287 322 70 0 chr4 11995879 11996022 -172292640 - HsTC2 DNA Tc2 -113 1785 1633 1231 233 3 72 chr4 11996060 11996243 -172292419 + L1MA4 LINE L1 5767 5910 -390 1627 178 0 4 chr4 11996243 11996524 -172292138 + AluSx SINE Alu 1 280 -32 1231 233 3 72 chr4 11996524 11996731 -172291931 + L1MA4 LINE L1 5910 6130 -170 2126 105 16 3 chr4 11996810 11997114 -172291548 - AluSp SINE Alu -5 308 1 1878 243 25 0 chr4 11997159 11998153 -172290509 + L1MA7 LINE L1 4818 5781 -402 1899 140 3 20 chr4 11998153 11998453 -172290209 + AluSx SINE Alu 1 295 -17 1878 243 25 0 chr4 11998453 11998591 -172290071 + L1MA7 LINE L1 5781 5913 -270 1947 123 35 3 chr4 11998591 11998876 -172289786 + AluSx SINE Alu 2 295 -17 1878 243 25 0 chr4 11998876 11999128 -172289534 + L1MA7 LINE L1 5913 6153 -30 29 0 0 0 chr4 11999148 11999177 -172289485 + AT_rich Low_complexity Low_complexity 1 29 0 3448 213 15 74 chr4 11999639 12000669 -172287993 + LTR5 LTR ERVK 1 969 0 369 346 47 14 chr4 12000994 12001208 -172287454 - MIR SINE MIR -10 252 32 2078 118 0 43 chr4 12001602 12001925 -172286737 + AluSg SINE Alu 1 309 -1 364 202 20 10 chr4 12003049 12003148 -172285514 + L1M4 LINE L1 4623 4722 -1424 297 0 0 0 chr4 12003155 12003188 -172285474 + (TA)n Simple_repeat Simple_repeat 1 33 0 338 284 79 22 chr4 12003190 12003419 -172285243 - L1M4 LINE L1 -3189 2957 2716 430 238 163 44 chr4 12003571 12003953 -172284709 - MLT1J2 LTR MaLR -2 448 1 310 331 31 8 chr4 12003961 12004091 -172284571 - L1M4 LINE L1 -3594 2552 2420 216 315 112 11 chr4 12004167 12004256 -172284406 - MIR3 SINE MIR -54 154 57 4783 124 308 91 chr4 12004367 12005760 -172282902 - pTR5 LTR ERV1 0 2438 743 407 295 248 15 chr4 12007050 12007676 -172280986 + L2 LINE L2 2243 3028 -244 2131 141 7 7 chr4 12007737 12008043 -172280619 - AluSq SINE Alu -7 306 1 311 271 14 17 chr4 12008358 12008460 -172280202 - MER5A DNA MER1_type 0 189 79 * 442 288 169 0 chr4 12008452 12008612 -172280050 + L2 LINE L2 2519 2705 -609 1385 181 36 12 chr4 12008613 12008862 -172279800 - AluJo SINE Alu -16 296 42 378 108 0 0 chr4 12008931 12008996 -172279666 + (TC)n Simple_repeat Simple_repeat 2 66 0 2521 70 3 0 chr4 12009642 12009943 -172278719 + AluY SINE Alu 1 302 -9 2126 136 3 3 chr4 12010179 12010488 -172278174 - AluSc SINE Alu 0 309 1 202 333 17 0 chr4 12010750 12010810 -172277852 + MIR SINE MIR 15 75 -187 2629 239 34 8 chr4 12010815 12011431 -172277231 - ERVL LTR ERVL -3615 2149 1518 466 268 16 0 chr4 12011447 12011570 -172277092 + MIR SINE MIR 99 223 -39 212 319 88 0 chr4 12011660 12011773 -172276889 - L2 LINE L2 -13 3300 3178 328 296 104 70 chr4 12012249 12012692 -172275970 + L2 LINE L2 2804 3261 -11 608 294 16 36 chr4 12014807 12015055 -172273607 + MIR SINE MIR 8 250 -12 1713 175 7 7 chr4 12015138 12015430 -172273232 + AluJb SINE Alu 1 292 -20 637 204 39 100 chr4 12016737 12016968 -172271694 - MER20 DNA MER1_type -2 217 1 383 315 54 22 chr4 12016997 12017181 -172271481 + MIR SINE MIR 41 230 -32 2167 134 3 0 chr4 12017184 12017490 -172271172 - AluSx SINE Alu -5 307 1 242 365 69 0 chr4 12018595 12018798 -172269864 - L2 LINE L2 -943 2371 2155 1471 124 45 0 chr4 12018826 12019028 -172269634 - AluSx SINE Alu -96 216 6 25 31 0 0 chr4 12019038 12019070 -172269592 + AT_rich Low_complexity Low_complexity 1 32 0 219 164 55 0 chr4 12019204 12019259 -172269403 + A-rich Low_complexity Low_complexity 2 59 0 1214 225 23 43 chr4 12019259 12019355 -172269307 + L1MB3 LINE L1 5814 5910 -273 1858 141 35 0 chr4 12019355 12019638 -172269024 + AluSx SINE Alu 3 295 -17 1214 225 23 43 chr4 12019638 12019888 -172268774 + L1MB3 LINE L1 5910 6153 -30 31 0 0 0 chr4 12019908 12019939 -172268723 + AT_rich Low_complexity Low_complexity 1 31 0 3678 206 17 59 chr4 12020397 12021409 -172267253 + LTR5 LTR ERVK 1 969 0 290 379 47 14 chr4 12021735 12021949 -172266713 - MIR SINE MIR -10 252 32 2114 128 0 6 chr4 12022343 12022655 -172266007 + AluSg SINE Alu 1 310 0 224 259 59 52 chr4 12023020 12023155 -172265507 + L2 LINE L2 3137 3272 0 2154 122 0 3 chr4 12023213 12023517 -172265145 - AluY SINE Alu -8 303 1 204 40 0 0 chr4 12024667 12024692 -172263970 + (T)n Simple_repeat Simple_repeat 1 25 0 1003 233 213 44 chr4 12025254 12026663 -172261999 - SATR1 Satellite Satellite -1 1646 1 913 249 255 27 chr4 12026700 12028103 -172260559 - SATR1 Satellite Satellite -94 1722 1 568 241 95 75 chr4 12028206 12028634 -172260028 - SATR1 Satellite Satellite -24 436 1 22 0 0 0 chr4 12028883 12028905 -172259757 + GC_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 12028967 12028990 -172259672 + GC_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 12030152 12030175 -172258487 + GC_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 12030237 12030260 -172258402 + GC_rich Low_complexity Low_complexity 1 23 0 1234 258 106 23 chr4 12030371 12031152 -172257510 - SATR1 Satellite Satellite -3 845 1 21 36 0 0 chr4 12031198 12031226 -172257436 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr4 12031244 12031270 -172257392 + AT_rich Low_complexity Low_complexity 1 26 0 208 229 7 57 chr4 12031335 12031475 -172257187 + (TTA)n Simple_repeat Simple_repeat 1 133 0 27254 106 12 11 chr4 12031503 12035558 -172253104 + HERVE LTR ERV1 1108 5165 -2648 1897 186 115 34 chr4 12035558 12038074 -172250588 - SATR1 Satellite Satellite -144 2718 1 1384 121 27 31 chr4 12038078 12038301 -172250361 - AluSq SINE Alu -91 222 1 625 223 51 5 chr4 12040193 12040390 -172248272 + MER6B DNA MER2_type 5 210 0 421 200 73 80 chr4 12040493 12040643 -172248019 - MER5B DNA MER1_type -5 173 25 2090 128 0 46 chr4 12040786 12041114 -172247548 - AluSp SINE Alu 0 313 1 249 315 70 0 chr4 12041119 12041262 -172247400 - HsTC2 DNA Tc2 -113 1785 1633 1242 246 2 60 chr4 12041300 12041483 -172247179 + L1MA4 LINE L1 5767 5959 -341 1654 183 0 3 chr4 12041483 12041767 -172246895 + AluSx SINE Alu 1 283 -29 1242 246 2 60 chr4 12041767 12042001 -172246661 + L1MA4 LINE L1 5959 6160 -140 2083 128 3 3 chr4 12042051 12042355 -172246307 - AluSp SINE Alu -9 304 1 2804 238 23 51 chr4 12042398 12043394 -172245268 + L1MB3 LINE L1 4814 5837 -346 1833 151 3 28 chr4 12043394 12043713 -172244949 + AluSx SINE Alu 1 311 -1 2804 238 23 51 chr4 12043713 12043841 -172244821 + L1MB3 LINE L1 5837 5967 -216 1760 149 40 0 chr4 12043841 12044116 -172244546 + AluSx SINE Alu 10 295 -17 2804 238 23 51 chr4 12044116 12044368 -172244294 + L1MB3 LINE L1 5967 6153 -30 24 32 0 0 chr4 12044388 12044419 -172244243 + AT_rich Low_complexity Low_complexity 1 31 0 3110 229 17 62 chr4 12044876 12045891 -172242771 + LTR5 LTR ERVK 1 969 0 1763 209 107 37 chr4 12046161 12047323 -172241339 - SATR1 Satellite Satellite -20 1243 1 372 250 12 29 chr4 12047445 12047617 -172241045 + (TTA)n Simple_repeat Simple_repeat 1 169 0 35 24 0 0 chr4 12047669 12047711 -172240951 + AT_rich Low_complexity Low_complexity 1 42 0 1973 221 103 12 chr4 12047711 12048787 -172239875 - SATR1 Satellite Satellite -52 1174 1 181 333 78 31 chr4 12050423 12050552 -172238110 - MIR3 SINE MIR -63 145 11 1847 114 33 13 chr4 12051514 12051813 -172236849 + AluSq SINE Alu 1 305 -8 1940 139 0 13 chr4 12051837 12052153 -172236509 + AluSx SINE Alu 1 312 0 1572 130 32 0 chr4 12052163 12052410 -172236252 + AluJo SINE Alu 1 255 -57 248 303 15 0 chr4 12052495 12052561 -172236101 - MER112 DNA MER1_type -175 85 19 2282 102 0 6 chr4 12055728 12056043 -172232619 - AluSq SINE Alu 0 313 1 629 237 28 90 chr4 12056110 12056200 -172232462 + L1MEd LINE L1 23 117 -6002 2045 108 11 0 chr4 12056200 12056486 -172232176 + AluSq SINE Alu 1 289 -24 243 0 0 0 chr4 12056491 12056518 -172232144 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 629 237 28 90 chr4 12056518 12056632 -172232030 + L1MEd LINE L1 121 220 -5899 1107 267 58 47 chr4 12056693 12056930 -172231732 + L1MEd LINE L1 329 575 -5544 2003 111 17 3 chr4 12056930 12057219 -172231443 + AluSq SINE Alu 1 293 -20 1107 267 58 47 chr4 12057219 12057426 -172231236 + L1MEd LINE L1 575 778 -5341 382 285 0 24 chr4 12057473 12057596 -172231066 + MLT1E LTR MaLR 1 120 -473 508 28 14 14 chr4 12057598 12057669 -172230993 + (TTTTA)n Simple_repeat Simple_repeat 3 73 0 585 259 0 0 chr4 12057669 12057785 -172230877 - FLAM_C SINE Alu -26 117 2 2163 83 21 0 chr4 12057795 12058084 -172230578 - AluSx SINE Alu -17 295 1 276 235 128 5 chr4 12058092 12058251 -172230411 + MLT1E3 LTR MaLR 12 262 -392 303 218 110 0 chr4 12058304 12058397 -172230265 + MLT1E3 LTR MaLR 290 397 -227 363 216 117 47 chr4 12058401 12058572 -172230090 - SATR1 Satellite Satellite -131 339 157 1854 138 7 13 chr4 12058861 12059165 -172229497 + AluSx SINE Alu 3 304 -8 25 0 0 0 chr4 12059175 12059200 -172229462 + AT_rich Low_complexity Low_complexity 1 25 0 2578 121 54 64 chr4 12059235 12059577 -172229085 - L1MA8 LINE L1 -3 6288 5951 1793 161 10 3 chr4 12059577 12059887 -172228775 - AluJo SINE Alu 0 312 1 2578 121 54 64 chr4 12059887 12060063 -172228599 - L1MA8 LINE L1 -340 5951 5775 1073 202 14 23 chr4 12060452 12060670 -172227992 + MER58A DNA MER1_type 9 224 0 2026 137 13 0 chr4 12061612 12061918 -172226744 + AluSx SINE Alu 1 310 -2 344 273 65 65 chr4 12062100 12062254 -172226408 + MIR SINE MIR 101 254 -8 659 203 6 55 chr4 12062792 12062974 -172225688 - MER53 DNA DNA -3 186 14 2126 111 13 7 chr4 12063685 12063992 -172224670 - AluSq SINE Alu -4 309 1 267 200 67 32 chr4 12064335 12064456 -172224206 + L2 LINE L2 2921 3047 -266 338 288 136 0 chr4 12064686 12064811 -172223851 - MIR SINE MIR -115 147 6 1341 146 36 0 chr4 12066114 12066333 -172222329 + AluSg SINE Alu 1 227 -83 446 178 10 30 chr4 12066412 12066513 -172222149 + AluSg SINE Alu 207 305 -4 2183 67 14 0 chr4 12066601 12066884 -172221778 - L1PA8 LINE L1 0 6172 5886 262 378 27 5 chr4 12067064 12067249 -172221413 - L1MC/D LINE L1 -2009 5799 5611 573 237 0 0 chr4 12067492 12067729 -172220933 + (TCCA)n Simple_repeat Simple_repeat 1 237 0 198 312 0 65 chr4 12067743 12067820 -172220842 - L2 LINE L2 -1 3312 3241 * 551 261 92 11 chr4 12067802 12067986 -172220676 + MIR SINE MIR 12 210 -52 181 368 43 17 chr4 12068111 12068228 -172220434 - L2 LINE L2 -163 3109 2990 1886 141 3 0 chr4 12068655 12068946 -172219716 + AluSx SINE Alu 11 302 -10 248 261 167 3 chr4 12069303 12069414 -172219248 + MIR3 SINE MIR 32 159 -49 215 176 20 59 chr4 12069517 12069568 -172219094 + MER5A DNA MER1_type 119 167 -22 187 114 86 0 chr4 12069537 12069572 -172219090 - MER5B DNA MER1_type -124 54 17 * 1627 162 22 11 chr4 12069862 12070164 -172218498 - AluJb SINE Alu 0 305 1 360 235 125 61 chr4 12070166 12070541 -172218121 - L1MC5 LINE L1 -28 7933 7535 1962 119 14 7 chr4 12070610 12070903 -172217759 + AluSc SINE Alu 1 295 -14 359 241 63 57 chr4 12071198 12071356 -172217306 - MER5B DNA MER1_type -3 175 17 187 366 14 0 chr4 12071444 12071515 -172217147 + L2 LINE L2 3106 3177 -95 1941 131 3 17 chr4 12071903 12072201 -172216461 + AluSx SINE Alu 1 294 -18 1727 136 4 4 chr4 12072792 12073056 -172215606 + AluSx SINE Alu 1 264 -48 786 195 168 27 chr4 12073128 12073462 -172215200 - HAL1b LINE L1 -28 1320 940 946 269 117 11 chr4 12073965 12074419 -172214243 - HAL1b LINE L1 -415 933 432 2211 92 0 16 chr4 12074426 12074741 -172213921 - AluY SINE Alu -1 310 1 241 293 49 0 chr4 12075013 12075095 -172213567 - L2 LINE L2 -220 3052 2967 1214 194 24 81 chr4 12075112 12075569 -172213093 + MLT2B1 LTR ERVL 5 414 0 565 89 0 0 chr4 12076146 12076225 -172212437 + MADE1 DNA Mariner 2 80 0 656 360 13 10 chr4 12077572 12077875 -172210787 + MLT1I LTR MaLR 103 406 -3 317 61 0 20 chr4 12077889 12077938 -172210724 + (TG)n Simple_repeat Simple_repeat 1 48 0 21 0 0 0 chr4 12078007 12078028 -172210634 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr4 12078957 12078977 -172209685 + (A)n Simple_repeat Simple_repeat 1 20 0 318 243 111 86 chr4 12079046 12079101 -172209561 + L1ME3A LINE L1 5874 5926 -244 751 234 18 31 chr4 12079101 12079323 -172209339 - MER20 DNA MER1_type 0 219 1 318 243 111 86 chr4 12079323 12079469 -172209193 + L1ME3A LINE L1 5926 6086 -84 1643 150 0 39 chr4 12079469 12079801 -172208861 - AluJb SINE Alu 0 312 1 318 243 111 86 chr4 12079801 12079878 -172208784 + L1ME3A LINE L1 6086 6160 -10 2006 139 7 0 chr4 12080237 12080532 -172208130 - AluSx SINE Alu -15 297 1 1055 147 0 0 chr4 12080673 12080836 -172207826 + AluSg/x SINE Alu 130 292 -20 1697 176 9 11 chr4 12081490 12081653 -172207009 - L1M4 LINE L1 -521 5653 5494 2064 116 0 7 chr4 12081653 12081955 -172206707 - AluSx SINE Alu -12 300 1 1697 176 9 11 chr4 12081955 12082119 -172206543 - L1M4 LINE L1 -680 5494 5331 944 274 133 33 chr4 12082119 12082539 -172206123 + L1ME1 LINE L1 5652 6113 -53 833 169 0 0 chr4 12082612 12082748 -172205914 + FLAM_C SINE Alu 2 137 -6 1048 93 0 0 chr4 12082752 12082891 -172205771 + AluSx SINE Alu 1 139 -173 1179 125 16 0 chr4 12083760 12083944 -172204718 + AluSx SINE Alu 121 307 -5 837 151 0 20 chr4 12083950 12084096 -172204566 + FRAM SINE Alu 4 146 -30 387 127 0 0 chr4 12084100 12084163 -172204499 + (CA)n Simple_repeat Simple_repeat 2 64 0 187 314 0 0 chr4 12084164 12084215 -172204447 - MER5A DNA MER1_type -53 136 86 263 227 174 38 chr4 12084341 12084473 -172204189 - MIR SINE MIR -20 242 93 2679 152 13 20 chr4 12084473 12084921 -172203741 - L1MA7 LINE L1 -232 6059 5615 997 167 88 0 chr4 12084916 12085132 -172203530 + L1MA7 LINE L1 6051 6285 -6 * 210 247 34 79 chr4 12085150 12085239 -172203423 - MIR SINE MIR -156 106 22 269 226 19 142 chr4 12086076 12086182 -172202480 - L2 LINE L2 -7 3265 3173 2910 206 21 77 chr4 12087056 12088082 -172200580 - LTR5 LTR ERVK 0 969 1 1098 185 0 0 chr4 12088084 12088262 -172200400 - HERVK LTR ERVK -2 7241 7064 379 273 13 26 chr4 12088347 12088501 -172200161 + CT-rich Low_complexity Low_complexity 1 152 0 2600 102 11 0 chr4 12088603 12088967 -172199695 - HERVK LTR ERVK -1720 5523 5156 1020 132 29 0 chr4 12089369 12089543 -172199119 - L1MA4 LINE L1 -12 6288 6110 5399 168 35 2 chr4 12089551 12090702 -172197960 + L1PB1 LINE L1 4295 5523 -628 2142 116 0 0 chr4 12090702 12091012 -172197650 + AluSg SINE Alu 1 310 0 5399 168 35 2 chr4 12091012 12091663 -172196999 + L1PB1 LINE L1 5523 6151 0 777 164 120 4 chr4 12091666 12091887 -172196775 - L1MA4 LINE L1 -172 6132 5880 3648 133 14 0 chr4 12091934 12092519 -172196143 - L1MA4A LINE L1 -376 5927 5335 1230 180 4 4 chr4 12092508 12092753 -172195909 - L1P LINE L1 -942 5204 4960 * 9882 212 24 41 chr4 12092754 12093201 -172195461 - L1 LINE L1 -940 5908 5455 243 0 0 0 chr4 12093201 12093228 -172195434 + (TA)n Simple_repeat Simple_repeat 2 28 0 1877 117 0 51 chr4 12093228 12093544 -172195118 - AluY SINE Alu -11 300 1 9882 212 24 41 chr4 12093544 12094028 -172194634 - L1 LINE L1 -1392 5456 4965 431 95 0 40 chr4 12094028 12094102 -172194560 - AluSq SINE Alu -1 311 241 1123 127 30 0 chr4 12094103 12094268 -172194394 - AluSq SINE Alu -143 170 1 9882 212 24 41 chr4 12094268 12096460 -172192202 - L1 LINE L1 -1883 4965 2737 2100 139 51 20 chr4 12096460 12096813 -172191849 + THE1B LTR MaLR 1 364 0 11037 111 16 11 chr4 12096813 12098385 -172190277 + THE1B-int LTR MaLR 1 1580 0 2150 128 48 31 chr4 12098385 12098743 -172189919 + THE1B LTR MaLR 1 364 0 9882 212 24 41 chr4 12098743 12098993 -172189669 - L1 LINE L1 -4108 2740 2521 183 42 0 0 chr4 12098994 12099018 -172189644 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 834 189 0 0 chr4 12099021 12099164 -172189498 - FRAM SINE Alu -33 143 1 5888 211 59 18 chr4 12099164 12100215 -172188447 - L1 LINE L1 -4327 2522 1425 1954 126 4 0 chr4 12100215 12100524 -172188138 - AluSg SINE Alu 0 310 1 5888 211 59 18 chr4 12100524 12100936 -172187726 - L1 LINE L1 -5424 1425 1032 847 275 14 5 chr4 12101153 12101371 -172187291 - MER58A DNA MER1_type -1 223 4 1344 218 7 4 chr4 12101485 12101760 -172186902 + AluJo SINE Alu 1 276 -36 438 167 39 98 chr4 12101962 12102064 -172186598 - MLT1H LTR MaLR 0 549 454 * 726 257 112 51 chr4 12102062 12102393 -172186269 - MLT1H LTR MaLR -198 351 1 207 139 0 0 chr4 12103090 12103126 -172185536 + (T)n Simple_repeat Simple_repeat 1 36 0 1909 123 10 7 chr4 12103327 12103628 -172185034 + AluSc SINE Alu 1 302 -7 645 248 39 9 chr4 12103897 12104127 -172184535 + Charlie5 DNA MER1_type 2334 2570 -42 1939 179 43 0 chr4 12104296 12104665 -172183997 + L1MB7 LINE L1 5575 5959 -219 1119 104 75 0 chr4 12104665 12104838 -172183824 + AluSg/x SINE Alu 104 289 -23 975 206 34 0 chr4 12104841 12105045 -172183617 + L1MB7 LINE L1 5974 6184 0 404 302 43 71 chr4 12105045 12105197 -172183465 - L2 LINE L2 -221 3051 2907 1950 141 0 0 chr4 12105197 12105495 -172183167 - AluSq SINE Alu -15 298 1 404 302 43 71 chr4 12105495 12105597 -172183065 - L2 LINE L2 -365 2907 2804 208 300 0 0 chr4 12105638 12105698 -172182964 + MIR SINE MIR 89 148 -60 2211 59 16 7 chr4 12105753 12106056 -172182606 - AluY SINE Alu -5 306 1 549 281 55 33 chr4 12106096 12106370 -172182292 - L2 LINE L2 -577 2737 2458 2035 123 0 3 chr4 12107127 12107428 -172181234 - AluSc SINE Alu -9 300 1 1356 148 19 5 chr4 12107546 12107762 -172180900 + AluSx SINE Alu 2 220 -92 373 211 39 29 chr4 12108019 12108123 -172180539 - L1M4 LINE L1 -391 5793 5689 * 1158 194 25 60 chr4 12108098 12108381 -172180281 + L1MB5 LINE L1 5902 6174 0 1937 150 0 0 chr4 12108385 12108685 -172179977 + AluSx SINE Alu 2 301 -11 618 198 8 24 chr4 12108700 12108826 -172179836 - MER5B DNA MER1_type -50 128 5 264 324 22 55 chr4 12108913 12109095 -172179567 + MER5A DNA MER1_type 3 178 -11 2068 122 16 0 chr4 12109188 12109492 -172179170 + AluSx SINE Alu 1 309 -3 1962 201 128 11 chr4 12109779 12110231 -172178431 - MLT1E LTR MaLR 0 593 89 7889 45 0 0 chr4 12110231 12111203 -172177459 - L1P LINE L1 -896 5250 4279 629 163 16 16 chr4 12111231 12111354 -172177308 + LTR2B LTR ERV1 272 394 -96 1109 112 0 25 chr4 12111359 12111520 -172177142 - AluSc SINE Alu -152 157 1 1567 207 207 51 chr4 12111665 12112231 -172176431 + MLT1E1 LTR MaLR 1 654 0 2061 111 0 16 chr4 12112242 12112548 -172176114 + AluSc SINE Alu 1 301 -8 229 360 41 18 chr4 12112603 12112750 -172175912 - MIR3 SINE MIR -54 154 46 2093 102 0 0 chr4 12112923 12113207 -172175455 + AluSc SINE Alu 1 284 -25 449 321 6 37 chr4 12113274 12113436 -172175226 - MIR SINE MIR -105 157 1 1882 140 3 3 chr4 12113487 12113780 -172174882 + AluSx SINE Alu 1 293 -19 714 257 43 77 chr4 12113944 12114200 -172174462 + MLT1I LTR MaLR 87 331 -78 1835 143 24 3 chr4 12114200 12114493 -172174169 + AluSx SINE Alu 1 299 -13 714 257 43 77 chr4 12114493 12114563 -172174099 + MLT1I LTR MaLR 331 402 -7 494 288 7 22 chr4 12114911 12115050 -172173612 - L2 LINE L2 0 3272 3136 6176 62 140 59 chr4 12115077 12116158 -172172504 - MER11A LTR ERVK 0 1266 1 890 307 98 43 chr4 12116167 12116859 -172171803 - L2 LINE L2 -212 3101 2345 1524 159 0 55 chr4 12116859 12117168 -172171494 - AluJo SINE Alu -20 292 1 890 307 98 43 chr4 12117168 12117402 -172171260 - L2 LINE L2 -968 2345 2125 210 362 17 75 chr4 12118036 12118210 -172170452 + L3 LINE CR1 1033 1196 -381 871 126 0 0 chr4 12118232 12118359 -172170303 + AluSq/x SINE Alu 9 135 -177 1991 135 10 3 chr4 12118359 12118662 -172170000 + AluSq SINE Alu 1 305 -8 1176 182 4 48 chr4 12118702 12118819 -172169843 + MER58A DNA MER1_type 1 105 -2315 2109 151 135 0 chr4 12118819 12119196 -172169466 - MSTA LTR MaLR 0 428 1 1176 182 4 48 chr4 12119196 12119309 -172169353 + MER58A DNA MER1_type 105 221 -3 208 175 25 0 chr4 12119319 12119359 -172169303 + GA-rich Low_complexity Low_complexity 3 43 0 227 316 96 7 chr4 12119363 12119499 -172169163 + L3 LINE CR1 1230 1377 -200 4306 84 2 2 chr4 12119506 12120064 -172168598 + LTR6B LTR ERV1 1 558 0 21949 138 21 6 chr4 12120066 12123252 -172165410 + HERVS71 LTR ERV1 4 3236 -5742 13913 143 18 0 chr4 12123261 12126070 -172162592 + HERVS71 LTR ERV1 4870 7795 -1183 2180 105 13 3 chr4 12126059 12126372 -172162290 + HERVS71 LTR ERV1 8594 8909 -69 * 4355 62 16 0 chr4 12126372 12126921 -172161741 + LTR6B LTR ERV1 1 558 0 2140 86 7 0 chr4 12127176 12127468 -172161194 - AluSp SINE Alu -14 299 6 288 257 110 58 chr4 12128086 12128327 -172160335 - MLT1H LTR MaLR 0 595 248 1851 100 17 79 chr4 12128454 12128814 -172159848 - MER4A LTR ERV1 -6 658 263 446 121 0 15 chr4 12128814 12128880 -172159782 - MER4A LTR ERV1 -566 98 34 1628 126 0 33 chr4 12128881 12129152 -172159510 - AluSx SINE Alu -22 290 29 610 78 0 0 chr4 12129152 12129229 -172159433 - AluS SINE Alu -235 78 2 309 116 0 0 chr4 12129230 12129273 -172159389 - MER4A LTR ERV1 -620 44 2 442 270 110 6 chr4 12129273 12129436 -172159226 - MLT1H LTR MaLR -356 193 14 279 0 0 0 chr4 12129441 12129472 -172159190 + (CA)n Simple_repeat Simple_repeat 1 31 0 1761 87 146 0 chr4 12129753 12130007 -172158655 - AluSg SINE Alu -5 295 5 380 260 47 89 chr4 12130201 12130459 -172158203 + MLT1K LTR MaLR 180 426 -162 1802 146 30 0 chr4 12130582 12130883 -172157779 + AluSg SINE Alu 1 310 0 1134 299 23 0 chr4 12130885 12131189 -172157473 + LTR16C LTR ERVL 164 474 -17 585 122 0 5 chr4 12131700 12131890 -172156772 + AluSx SINE Alu 2 276 -36 595 188 70 26 chr4 12132672 12132828 -172155834 - MLT1I LTR MaLR -7 424 267 241 284 95 24 chr4 12133042 12133192 -172155470 - MIR SINE MIR -45 163 3 331 240 11 42 chr4 12133576 12133698 -172154964 - MER58 DNA MER1_type 0 2420 102 1474 200 37 31 chr4 12133707 12134057 -172154605 + L1MB5 LINE L1 5813 6164 -20 1329 220 14 0 chr4 12134057 12134352 -172154310 - AluJo SINE Alu -12 300 2 1823 133 3 42 chr4 12134521 12134830 -172153832 - AluJb SINE Alu -11 301 5 329 40 40 0 chr4 12134989 12135039 -172153623 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 2019 124 0 0 chr4 12135041 12135323 -172153339 - AluSx SINE Alu -30 282 1 593 206 38 0 chr4 12135330 12135461 -172153201 - L1MB4 LINE L1 0 6180 6045 186 43 0 0 chr4 12135638 12135661 -172153001 + (CTG)n Simple_repeat Simple_repeat 3 25 0 1130 186 25 39 chr4 12135979 12136259 -172152403 - AluJo SINE Alu -36 276 1 1770 172 0 7 chr4 12136290 12136598 -172152064 + AluSx SINE Alu 7 312 0 385 332 65 13 chr4 12136666 12136898 -172151764 + L2 LINE L2 2710 2953 -361 293 248 70 104 chr4 12136897 12137181 -172151481 - L2 LINE L2 -91 3181 2910 * 1644 115 0 0 chr4 12137287 12137513 -172151149 + L1P LINE L1 1 226 -5920 841 100 0 9 chr4 12187513 12187650 -172101012 + AluSp/q SINE Alu 177 312 0 858 129 0 43 chr4 12189367 12189506 -172099156 - FLAM_C SINE Alu 0 133 1 886 164 6 73 chr4 12189536 12189701 -172098961 + FRAM SINE Alu 1 153 -23 2435 66 16 7 chr4 12189711 12190015 -172098647 + AluSp SINE Alu 2 308 -5 679 150 17 0 chr4 12190396 12190516 -172098146 - MSTA LTR MaLR -306 122 1 3586 205 23 29 chr4 12190516 12190710 -172097952 - MER21-int LTR ERV1 -919 3272 3078 1955 104 80 7 chr4 12190710 12190997 -172097665 - AluSx SINE Alu -4 308 1 3586 205 23 29 chr4 12190997 12191217 -172097445 - MER21-int LTR ERV1 -1113 3078 2858 2017 113 46 0 chr4 12191217 12191501 -172097161 - AluSp SINE Alu -15 298 2 3586 205 23 29 chr4 12191501 12191872 -172096790 - MER21-int LTR ERV1 -1333 2858 2491 1672 181 7 7 chr4 12192131 12192434 -172096228 - MER21-int LTR ERV1 -1711 2480 2178 2413 106 0 3 chr4 12192438 12192749 -172095913 - AluSq SINE Alu -3 310 1 934 175 5 31 chr4 12192751 12192945 -172095717 - MLT1D LTR MaLR -316 189 1 223 250 115 83 chr4 12192973 12192991 -172095671 + L2 LINE L2 1797 1813 -1501 2319 129 3 0 chr4 12192991 12193301 -172095361 - AluSp SINE Alu -2 311 1 223 250 115 83 chr4 12193301 12193438 -172095224 + L2 LINE L2 1813 1957 -1357 348 221 78 52 chr4 12193698 12193852 -172094810 - L1ME3A LINE L1 -44 6126 5969 282 158 0 0 chr4 12193876 12193933 -172094729 - L1MC1 LINE L1 -1 6332 6276 1200 118 0 24 chr4 12193933 12194103 -172094559 + AluSg SINE Alu 1 166 -144 1340 169 4 0 chr4 12194206 12194443 -172094219 - L1MC1 LINE L1 -313 6020 5783 2003 153 0 3 chr4 12194452 12194777 -172093885 - AluSx SINE Alu 0 312 1 345 250 164 8 chr4 12195103 12195231 -172093431 - MLT1J2 LTR MaLR -51 399 252 2631 91 100 5 chr4 12195920 12196329 -172092333 - LTR7 LTR ERV1 -2 448 1 1213 189 121 33 chr4 12196782 12197157 -172091505 - MLT1C LTR MaLR 0 505 59 * 2234 204 40 32 chr4 12197147 12197164 -172091498 - LTR1 LTR ERV1 -281 504 489 6341 125 11 10 chr4 12197164 12198082 -172090580 - LTR5 LTR ERVK 0 969 51 2234 204 40 32 chr4 12198082 12198564 -172090098 - LTR1 LTR ERV1 -296 489 1 1451 132 4 66 chr4 12199446 12199689 -172088973 + AluSg/x SINE Alu 71 298 -12 907 147 47 32 chr4 12199696 12199886 -172088776 + MSTB LTR MaLR 196 388 -38 260 86 0 0 chr4 12199885 12199920 -172088742 + U2 snRNA snRNA 1 35 -153 * 364 109 0 0 chr4 12199918 12199973 -172088689 + MSTB LTR MaLR 374 428 0 605 175 22 36 chr4 12199973 12200110 -172088552 + MER21-int LTR ERV1 3268 3402 -789 2311 114 0 0 chr4 12200110 12200407 -172088255 - AluSg SINE Alu -13 297 1 2304 118 0 9 chr4 12201930 12202245 -172086417 - AluSx SINE Alu 0 312 1 719 274 58 0 chr4 12202457 12202680 -172085982 - MER82 DNA MER2_type 0 653 418 2136 112 38 0 chr4 12202681 12202968 -172085694 - AluSx SINE Alu -14 298 1 323 157 112 34 chr4 12204589 12204641 -172084021 - MLT2A2 LTR ERVL 0 453 407 267 31 0 0 chr4 12204641 12204673 -172083989 + (TA)n Simple_repeat Simple_repeat 2 33 0 323 157 112 34 chr4 12204673 12204709 -172083953 - MLT2A2 LTR ERVL -46 407 358 237 132 0 0 chr4 12204708 12204746 -172083916 + MLT2A1 LTR ERVL 349 386 -58 * 243 0 0 0 chr4 12204749 12204776 -172083886 + (TG)n Simple_repeat Simple_repeat 2 28 0 181 323 39 55 chr4 12204821 12204832 -172083830 - L2 LINE L2 -77 3236 3226 2078 128 3 7 chr4 12204832 12205130 -172083532 + AluSg SINE Alu 1 297 -13 181 323 39 55 chr4 12205130 12205245 -172083417 - L2 LINE L2 -87 3226 3112 202 283 0 0 chr4 12205427 12205480 -172083182 + MIR SINE MIR 203 255 -7 465 19 0 0 chr4 12206848 12206902 -172081760 + (TA)n Simple_repeat Simple_repeat 2 55 0 747 121 0 0 chr4 12206902 12207001 -172081661 - AluSx SINE Alu -18 294 196 1205 68 7 7 chr4 12207002 12207148 -172081514 - AluSx SINE Alu -167 146 1 1262 193 42 87 chr4 12207154 12207515 -172081147 - L1MB7 LINE L1 -9 6175 5834 2067 127 3 7 chr4 12207515 12207806 -172080856 - AluSx SINE Alu -17 295 6 1262 193 42 87 chr4 12207806 12207870 -172080792 - L1MB7 LINE L1 -350 5834 5769 724 208 6 6 chr4 12208732 12208910 -172079752 + CT-rich Low_complexity Low_complexity 1 178 0 2040 137 20 3 chr4 12208910 12209216 -172079446 - AluSq SINE Alu -2 311 1 23 33 0 0 chr4 12209595 12209625 -172079037 + AT_rich Low_complexity Low_complexity 1 30 0 785 196 0 0 chr4 12209628 12209761 -172078901 - FLAM_C SINE Alu 0 133 1 762 113 9 0 chr4 12210147 12210262 -172078400 - THE1B LTR MaLR -248 116 1 776 262 29 57 chr4 12210667 12210946 -172077716 - MLT1A2 LTR MaLR -17 357 87 319 313 67 8 chr4 12210968 12211102 -172077560 - MIR SINE MIR -73 189 48 356 345 20 14 chr4 12211250 12211398 -172077264 + L2 LINE L2 3165 3313 0 570 260 0 0 chr4 12212442 12212790 -172075872 + (TG)n Simple_repeat Simple_repeat 1 348 0 543 255 0 0 chr4 12212859 12213128 -172075534 + (TG)n Simple_repeat Simple_repeat 1 269 0 194 267 67 33 chr4 12214237 12214297 -172074365 + MIR3 SINE MIR 146 207 -1 523 328 114 45 chr4 12214606 12215071 -172073591 - L2 LINE L2 -1 3271 2765 429 54 32 172 chr4 12215071 12215110 -172073552 + MADE1 DNA Mariner 1 21 -59 2003 136 13 20 chr4 12215110 12215412 -172073250 - AluSx SINE Alu -12 300 1 429 54 32 172 chr4 12215412 12215465 -172073197 + MADE1 DNA Mariner 21 80 0 523 328 114 45 chr4 12215465 12215545 -172073117 - L2 LINE L2 -507 2765 2692 466 244 8 17 chr4 12215567 12215686 -172072976 + MER58B DNA MER1_type 210 327 -14 1631 186 3 21 chr4 12215873 12216158 -172072504 + AluJo SINE Alu 3 282 -30 294 87 0 0 chr4 12216158 12216204 -172072458 + (TC)n Simple_repeat Simple_repeat 1 46 0 378 0 0 0 chr4 12216205 12216247 -172072415 + (TA)n Simple_repeat Simple_repeat 2 43 0 1175 231 15 45 chr4 12216288 12216310 -172072352 + L1MB3 LINE L1 5794 5815 -368 1931 141 7 0 chr4 12216310 12216587 -172072075 + AluSx SINE Alu 1 279 -33 252 111 0 0 chr4 12216594 12216639 -172072023 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 1175 231 15 45 chr4 12216639 12216733 -172071929 + L1MB3 LINE L1 5821 5916 -267 2000 141 7 0 chr4 12216733 12217024 -172071638 + AluSx SINE Alu 3 295 -17 1175 231 15 45 chr4 12217024 12217276 -172071386 + L1MB3 LINE L1 5916 6153 -30 30 0 0 0 chr4 12217296 12217326 -172071336 + AT_rich Low_complexity Low_complexity 1 30 0 3460 211 21 64 chr4 12217788 12218801 -172069861 + LTR5 LTR ERVK 1 969 0 212 158 0 0 chr4 12219070 12219108 -172069554 + (ATG)n Simple_repeat Simple_repeat 3 40 0 289 354 51 23 chr4 12219127 12219342 -172069320 - MIR SINE MIR -10 252 32 2107 123 0 7 chr4 12219736 12220046 -172068616 + AluSg SINE Alu 1 308 -2 211 306 63 27 chr4 12220433 12220544 -172068118 + L2 LINE L2 3158 3272 0 1792 154 0 20 chr4 12220609 12220914 -172067748 - AluSc SINE Alu -10 299 1 778 237 280 15 chr4 12222626 12224839 -172063823 - SATR1 Satellite Satellite -6 2800 1 1574 225 100 37 chr4 12225032 12226668 -172061994 - SATR1 Satellite Satellite -20 1739 1 25 95 0 0 chr4 12226780 12226854 -172061808 + AT_rich Low_complexity Low_complexity 1 74 0 386 216 5 63 chr4 12226904 12227094 -172061568 + (TTA)n Simple_repeat Simple_repeat 2 180 0 18118 99 14 6 chr4 12227185 12229851 -172058811 + HERVE LTR ERV1 1108 3795 -4018 360 257 176 0 chr4 12230388 12230431 -172058231 + MER58C DNA MER1_type 56 90 -2330 234 0 0 0 chr4 12230431 12230457 -172058205 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 396 0 0 0 chr4 12230456 12230500 -172058162 + (CA)n Simple_repeat Simple_repeat 1 44 0 360 257 176 0 chr4 12230457 12230592 -172058070 + MER58C DNA MER1_type 90 215 0 678 301 98 3 chr4 12230593 12230907 -172057755 + MLT1L LTR MaLR 218 561 -54 853 214 75 15 chr4 12230907 12231108 -172057554 - MER58A DNA MER1_type 0 224 12 1352 216 131 45 chr4 12232151 12232600 -172056062 + MLT1D LTR MaLR 1 488 -17 2837 106 48 9 chr4 12232662 12232982 -172055680 + L1MA2 LINE L1 5846 6189 -115 1801 94 123 29 chr4 12232982 12233258 -172055404 + AluY SINE Alu 2 303 -8 2837 106 48 9 chr4 12233258 12233373 -172055289 + L1MA2 LINE L1 6189 6298 -6 329 290 195 30 chr4 12233553 12233922 -172054740 + L2 LINE L2 2015 2444 -870 2941 162 133 11 chr4 12233957 12234587 -172054075 + MER39 LTR ERV1 1 707 0 706 279 80 78 chr4 12234588 12235298 -172053364 + L2 LINE L2 2487 3213 -59 1698 170 38 10 chr4 12235358 12235646 -172053016 - AluJb SINE Alu -16 296 1 189 0 0 0 chr4 12235716 12235737 -172052925 + (A)n Simple_repeat Simple_repeat 1 21 0 741 271 112 77 chr4 12236071 12236653 -172052009 + MLT1L LTR MaLR 1 602 -13 3471 216 111 45 chr4 12236658 12237849 -172050813 - L1MC4 LINE L1 -3 8039 6770 257 279 81 22 chr4 12238110 12238246 -172050416 - MLT1J2 LTR MaLR -240 210 67 210 331 71 76 chr4 12238578 12239040 -172049622 - L2 LINE L2 -339 2975 2516 891 26 0 17 chr4 12239558 12239674 -172048988 - L1HS LINE L1 0 6155 6042 456 223 54 0 chr4 12239674 12239786 -172048876 - MIR SINE MIR -125 137 20 2055 117 13 17 chr4 12240728 12241028 -172047634 - AluSx SINE Alu -13 299 1 377 281 96 0 chr4 12241092 12241227 -172047435 + L2 LINE L2 2898 3045 -227 265 314 20 0 chr4 12241296 12241398 -172047264 - MLT1K LTR MaLR 0 588 485 282 269 22 0 chr4 12241432 12241566 -172047096 + CT-rich Low_complexity Low_complexity 2 138 0 533 255 43 70 chr4 12241844 12242154 -172046508 - MLT1G3 LTR MaLR -177 378 59 2299 134 97 35 chr4 12242186 12242589 -172046073 + MSTA LTR MaLR 1 428 0 339 274 89 13 chr4 12242672 12242829 -172045833 - MLT1J2 LTR MaLR -229 221 53 196 270 104 35 chr4 12243606 12243721 -172044941 + L2 LINE L2 2824 2946 -326 367 276 92 29 chr4 12243780 12243954 -172044708 + L2 LINE L2 3095 3279 -34 407 155 0 0 chr4 12244028 12244099 -172044563 - AluS SINE Alu -11 301 231 306 314 96 78 chr4 12244371 12244642 -172044020 - L2 LINE L2 -1 3271 2996 606 63 0 0 chr4 12244772 12244851 -172043811 + (TTCC)n Simple_repeat Simple_repeat 2 80 0 1879 125 0 45 chr4 12244865 12245154 -172043508 - AluSx SINE Alu -36 276 1 1510 143 198 0 chr4 12245542 12245800 -172042862 - AluSg1 SINE Alu 0 309 1 406 224 12 0 chr4 12245823 12245908 -172042754 - MIR SINE MIR -106 156 71 2511 74 0 0 chr4 12246151 12246448 -172042214 - AluY SINE Alu -14 297 1 285 29 0 0 chr4 12246473 12246507 -172042155 + (TC)n Simple_repeat Simple_repeat 1 34 0 210 333 13 0 chr4 12246507 12246582 -172042080 + L2 LINE L2 3197 3272 0 204 269 15 30 chr4 12246636 12246703 -172041959 - L2 LINE L2 -268 3004 2939 223 345 61 14 chr4 12247077 12247225 -172041437 - L2 LINE L2 -830 2484 2330 221 372 78 0 chr4 12247888 12248017 -172040645 - MIR SINE MIR -77 185 47 328 220 44 55 chr4 12251611 12251702 -172036960 + L2 LINE L2 3222 3311 -2 348 259 0 74 chr4 12251870 12251978 -172036684 + MIR3 SINE MIR 61 160 -48 671 312 71 67 chr4 12252418 12252854 -172035808 - L2 LINE L2 -33 3280 2843 804 269 27 0 chr4 12252921 12253107 -172035555 - MIR SINE MIR -59 203 13 380 258 80 49 chr4 12253332 12253495 -172035167 - MIR SINE MIR -48 214 47 794 176 118 43 chr4 12253496 12253683 -172034979 + MER20 DNA MER1_type 1 201 -18 295 308 110 2 chr4 12253756 12253862 -172034800 + MIR SINE MIR 31 145 -63 531 207 44 68 chr4 12253942 12254074 -172034588 - MLT1F1 LTR MaLR -421 146 13 605 203 153 21 chr4 12254099 12254915 -172033747 - L1MC4 LINE L1 -3 8039 7046 1768 177 3 6 chr4 12254915 12255226 -172033436 - AluJo SINE Alu -2 310 1 605 203 153 21 chr4 12255226 12255265 -172033397 - L1MC4 LINE L1 -996 7046 7014 1794 236 23 21 chr4 12255437 12255865 -172032797 - L1MC4 LINE L1 -1028 7014 6586 442 305 102 0 chr4 12256673 12256860 -172031802 - MIR SINE MIR -4 258 53 374 320 35 17 chr4 12257204 12257376 -172031286 + MER117 DNA MER1_type 20 194 -3 312 325 73 8 chr4 12257387 12257510 -172031152 + MER5B DNA MER1_type 3 133 -45 613 236 58 94 chr4 12258046 12258322 -172030340 + MLT1-int LTR MaLR 1106 1371 0 1156 249 81 35 chr4 12258326 12258672 -172029990 + MLT1F1 LTR MaLR 206 567 0 1732 173 0 61 chr4 12258894 12259223 -172029439 - AluJo SINE Alu -3 309 1 581 136 11 11 chr4 12259506 12259594 -172029068 - 5S rRNA rRNA -31 90 3 1750 61 5 0 chr4 12259605 12259818 -172028844 - AluSp SINE Alu -9 304 91 427 247 118 12 chr4 12259947 12260117 -172028545 - MIR3 SINE MIR -17 191 4 183 340 160 19 chr4 12260674 12260780 -172027882 + MIR SINE MIR 24 144 -64 2093 109 10 23 chr4 12260884 12261187 -172027475 - AluSq SINE Alu -14 299 1 460 269 34 20 chr4 12261190 12261339 -172027323 - MIR SINE MIR -75 187 37 222 311 0 0 chr4 12261666 12261740 -172026922 - MIR SINE MIR -1 261 188 2213 106 7 10 chr4 12261742 12262044 -172026618 - AluSc SINE Alu -8 301 1 687 312 17 4 chr4 12262617 12262848 -172025814 - MIR SINE MIR -12 250 17 397 279 31 0 chr4 12263171 12263300 -172025362 + MIR SINE MIR 116 248 -14 484 258 90 77 chr4 12263310 12263764 -172024898 - MLT1I LTR MaLR 0 409 1 192 314 47 12 chr4 12263800 12263886 -172024776 - L2 LINE L2 -16 3256 3168 453 301 49 32 chr4 12263965 12264151 -172024511 - MIR SINE MIR -62 146 5 448 127 63 0 chr4 12264529 12264608 -172024054 - AluJ/FRAM SINE Alu -15 297 214 254 261 0 34 chr4 12264652 12264740 -172023922 + L2 LINE L2 3188 3272 0 227 263 32 32 chr4 12265375 12265470 -172023192 - MIR3 SINE MIR -6 202 108 262 299 37 30 chr4 12265481 12265615 -172023047 + MIR SINE MIR 20 154 -108 1727 193 45 11 chr4 12265955 12266020 -172022642 - MLT1A1 LTR MaLR 0 365 304 252 0 0 0 chr4 12266020 12266048 -172022614 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1727 193 45 11 chr4 12266048 12266335 -172022327 - MLT1A1 LTR MaLR -61 304 1 562 230 56 8 chr4 12266842 12266968 -172021694 - LTR16B LTR ERVL -268 196 65 1663 201 25 23 chr4 12266984 12267336 -172021326 + MLT1B LTR MaLR 6 358 -32 1441 163 137 10 chr4 12267336 12267642 -172021020 - MER2 DNA MER2_type 0 345 1 257 343 122 12 chr4 12268154 12268399 -172020263 - LTR16C LTR ERVL -126 365 94 2235 96 13 19 chr4 12269286 12269598 -172019064 - AluSq SINE Alu -3 310 1 286 232 102 95 chr4 12269794 12270005 -172018657 + MIR SINE MIR 30 241 -21 540 223 109 6 chr4 12270104 12270279 -172018383 - MIR SINE MIR -30 232 40 352 272 139 23 chr4 12270393 12270566 -172018096 + L2 LINE L2 3121 3313 0 224 390 10 0 chr4 12270573 12270673 -172017989 - L2 LINE L2 -17 3296 3196 437 254 119 6 chr4 12271551 12271728 -172016934 - LTR33A LTR ERVL -10 513 317 759 300 97 25 chr4 12271839 12272159 -172016503 - MLT1I LTR MaLR -4 405 63 1667 143 20 8 chr4 12272161 12272413 -172016249 + AluSq SINE Alu 11 265 -48 979 228 49 4 chr4 12272528 12272774 -172015888 - MIR SINE MIR -3 259 3 2997 122 60 6 chr4 12272859 12273344 -172015318 + MER9 LTR ERVK 1 511 0 329 322 58 76 chr4 12273948 12274330 -172014332 + L2 LINE L2 2862 3236 -36 216 204 0 0 chr4 12275233 12275277 -172013385 + (TAA)n Simple_repeat Simple_repeat 2 45 0 372 239 54 15 chr4 12276362 12276492 -172012170 + MIR SINE MIR 89 223 -39 183 80 0 0 chr4 12276577 12276602 -172012060 + (T)n Simple_repeat Simple_repeat 1 25 0 528 308 54 23 chr4 12276737 12276997 -172011665 + L2 LINE L2 3046 3313 0 199 254 99 0 chr4 12277038 12277109 -172011553 + MIR SINE MIR 74 151 -111 880 291 65 63 chr4 12277796 12277941 -172010721 + MLT1K LTR MaLR 125 268 -320 1059 219 70 110 chr4 12277941 12278512 -172010150 + MLT1H LTR MaLR 2 549 0 880 291 65 63 chr4 12278512 12278827 -172009835 + MLT1K LTR MaLR 268 586 -2 193 388 10 0 chr4 12278972 12279075 -172009587 - L2 LINE L2 -1 3312 3209 183 283 0 0 chr4 12280271 12280317 -172008345 - L2 LINE L2 0 3272 3227 983 128 0 0 chr4 12280548 12280681 -172007981 + AluSx SINE Alu 1 133 -180 1258 134 0 0 chr4 12280711 12280890 -172007772 + AluSx SINE Alu 120 298 -14 250 389 87 0 chr4 12280971 12281097 -172007565 + L2 LINE L2 3136 3272 0 413 223 11 11 chr4 12281202 12281296 -172007366 - MLT1H LTR MaLR 0 549 456 348 302 57 48 chr4 12282101 12282349 -172006313 - MLT1J LTR MaLR 0 511 262 240 224 102 61 chr4 12282607 12282622 -172006040 - Charlie7 DNA MER1_type -2510 102 89 2275 112 0 0 chr4 12282622 12282936 -172005726 + AluSx SINE Alu 1 314 0 240 224 102 61 chr4 12282936 12283016 -172005646 - Charlie7 DNA MER1_type -2523 89 1 254 160 20 0 chr4 12283028 12283078 -172005584 - MLT1D LTR MaLR 0 626 576 1813 144 23 31 chr4 12283081 12283428 -172005234 + L1MA9 LINE L1 5958 6162 -16 1834 192 52 63 chr4 12283588 12284051 -172004611 - MLT1D LTR MaLR -41 464 7 411 234 45 36 chr4 12284071 12284182 -172004480 - L2 LINE L2 0 3313 3202 956 185 60 52 chr4 12285089 12285443 -172003219 - MER31B LTR ERV1 0 466 1 2342 87 17 0 chr4 12285575 12285875 -172002787 + AluY SINE Alu 1 305 -6 6425 226 59 55 chr4 12286004 12286386 -172002276 - L1ME LINE L1 -604 5956 5577 2107 141 0 0 chr4 12286386 12286690 -172001972 + AluSx SINE Alu 1 304 -8 6425 226 59 55 chr4 12286690 12288086 -172000576 - L1ME LINE L1 -983 5577 4188 2340 75 7 0 chr4 12288086 12288392 -172000270 + L1PA7 LINE L1 5847 6154 0 6425 226 59 55 chr4 12288392 12289353 -171999309 - L1ME LINE L1 -2372 4188 2604 493 249 60 38 chr4 12289366 12289551 -171999111 - L1ME LINE L1 -4658 1882 1694 277 329 100 46 chr4 12289571 12289851 -171998811 - L1ME LINE L1 -6205 335 41 1338 190 62 29 chr4 12290723 12290831 -171997831 + MSTC LTR MaLR 1 104 -324 207 114 0 0 chr4 12290831 12290866 -171997796 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 1338 190 62 29 chr4 12290866 12291124 -171997538 + MSTC LTR MaLR 104 426 -2 249 361 54 39 chr4 12291360 12291490 -171997172 + L2 LINE L2 3137 3268 -4 379 344 6 33 chr4 12292004 12292184 -171996478 - L3 LINE CR1 -11 1566 1392 347 286 32 71 chr4 12292194 12292320 -171996342 - MER117 DNA MER1_type -6 191 71 222 239 22 0 chr4 12292695 12292741 -171995921 - MIR SINE MIR -134 74 28 24 0 0 0 chr4 12292978 12293002 -171995660 + AT_rich Low_complexity Low_complexity 1 24 0 385 222 14 0 chr4 12294032 12294104 -171994558 - AluJ/FLAM SINE Alu -219 83 11 340 256 197 0 chr4 12294312 12294449 -171994213 + MIR SINE MIR 47 210 -52 285 257 67 89 chr4 12294545 12294724 -171993938 + MIR SINE MIR 21 195 -67 1760 266 92 16 chr4 12294746 12295485 -171993177 + L2 LINE L2 2298 3083 -230 1398 128 0 0 chr4 12295946 12296133 -171992529 + AluSq SINE Alu 1 187 -126 6424 100 18 8 chr4 12296134 12297366 -171991296 + L1PA11 LINE L1 4944 6174 0 210 233 11 111 chr4 12297752 12297842 -171990820 - MIR SINE MIR -112 150 70 755 151 88 12 chr4 12298020 12298218 -171990444 + MLT1B LTR MaLR 1 232 -158 2516 149 169 26 chr4 12298218 12298755 -171989907 + LTR18B LTR ERVL 1 614 0 902 185 0 0 chr4 12298779 12298930 -171989732 + MLT1B LTR MaLR 228 378 -12 214 228 76 0 chr4 12299545 12299624 -171989038 + MIR SINE MIR 85 169 -93 630 288 36 24 chr4 12300771 12301052 -171987610 + L2 LINE L2 2792 3075 -238 361 281 86 16 chr4 12301990 12302118 -171986544 - MER20B DNA MER1_type -604 179 43 1865 64 4 60 chr4 12302540 12302629 -171986033 + L1PB1 LINE L1 5887 5980 -171 2329 112 0 3 chr4 12302629 12302943 -171985719 + AluSq SINE Alu 1 313 0 678 97 0 26 chr4 12302832 12303145 -171985517 + AluSp/q SINE Alu 204 313 0 1865 64 4 60 chr4 12302943 12303134 -171985528 + L1PB1 LINE L1 5980 6151 0 250 337 132 36 chr4 12303305 12303723 -171984939 - L2 LINE L2 -338 2976 2519 304 224 0 0 chr4 12304476 12304534 -171984128 + L2 LINE L2 3214 3271 -1 352 333 67 7 chr4 12304772 12304922 -171983740 + MIR SINE MIR 103 261 -1 227 265 36 12 chr4 12304946 12305029 -171983633 - MIR SINE MIR -61 147 71 234 156 0 0 chr4 12305029 12305074 -171983588 + (ATG)n Simple_repeat Simple_repeat 1 45 0 467 298 70 56 chr4 12305109 12305138 -171983524 - MIR SINE MIR -32 230 203 5218 141 32 57 chr4 12305138 12306861 -171981801 + L1PA13 LINE L1 4441 6159 -4 467 298 70 56 chr4 12306861 12307046 -171981616 - MIR SINE MIR -59 203 13 313 250 7 43 chr4 12307332 12307472 -171981190 - L1ME4a LINE L1 -1 6120 5986 840 263 73 34 chr4 12307477 12307613 -171981049 - HAL1b LINE L1 -901 447 318 1807 138 66 39 chr4 12307613 12307976 -171980686 - THE1C LTR MaLR 0 375 3 840 263 73 34 chr4 12307976 12308196 -171980466 - HAL1b LINE L1 -1030 318 77 217 261 0 0 chr4 12308225 12308271 -171980391 + CT-rich Low_complexity Low_complexity 3 48 0 251 299 50 50 chr4 12309298 12309468 -171979194 - MIR SINE MIR -50 212 38 951 282 169 6 chr4 12309698 12310060 -171978602 - LTR16C LTR ERVL 0 491 71 789 299 24 36 chr4 12310393 12310644 -171978018 + MIR SINE MIR 15 262 0 356 240 44 11 chr4 12310913 12311017 -171977645 - MIR SINE MIR -61 147 56 180 97 0 0 chr4 12311018 12311049 -171977613 + (A)n Simple_repeat Simple_repeat 1 31 0 391 259 133 0 chr4 12311595 12311738 -171976924 + MIR SINE MIR 31 192 -70 2369 68 0 0 chr4 12311889 12312181 -171976481 - AluY SINE Alu -19 292 1 2686 10 0 3 chr4 12312292 12312598 -171976064 - AluY SINE Alu -6 305 1 409 301 94 15 chr4 12312841 12313052 -171975610 - MIR SINE MIR -18 190 11 181 301 165 19 chr4 12313362 12313465 -171975197 + MIR SINE MIR 21 138 -124 516 295 65 20 chr4 12313829 12313998 -171974664 + MIR SINE MIR 52 233 -29 1901 145 175 11 chr4 12313998 12314364 -171974298 - MSTA LTR MaLR 0 428 3 516 295 65 20 chr4 12314364 12314394 -171974268 + MIR SINE MIR 233 260 -2 208 333 67 19 chr4 12314415 12314520 -171974142 - L2 LINE L2 -2 3270 3161 337 244 44 31 chr4 12314820 12314970 -171973692 - MIR3 SINE MIR -17 191 37 233 266 210 8 chr4 12315385 12315509 -171973153 + L2 LINE L2 3158 3306 -7 2163 82 7 16 chr4 12315565 12315870 -171972792 - AluY SINE Alu -9 302 1 197 266 42 63 chr4 12316055 12316198 -171972464 - L2 LINE L2 -568 2746 2607 14753 217 60 19 chr4 12316832 12319113 -171969549 + L1PA13 LINE L1 2 2188 -4609 2751 10 0 0 chr4 12319113 12319420 -171969242 - AluYb8 SINE Alu -11 307 1 14753 217 60 19 chr4 12319420 12319777 -171968885 + L1PA13 LINE L1 2188 2529 -4268 2011 109 53 0 chr4 12319777 12320062 -171968600 + AluSx SINE Alu 1 300 -12 14753 217 60 19 chr4 12320062 12322684 -171965978 + L1PA13 LINE L1 2529 5494 -1303 209 269 86 21 chr4 12322972 12323065 -171965597 - L2 LINE L2 -1 3271 3173 672 218 47 21 chr4 12323341 12323534 -171965128 + LTR16C LTR ERVL 281 478 -13 258 308 13 13 chr4 12323657 12323735 -171964927 - MER81 DNA DNA -36 78 1 415 222 10 20 chr4 12324219 12324318 -171964344 + MER94 DNA DNA 17 114 -20 192 222 181 0 chr4 12324318 12324390 -171964272 - MIR SINE MIR -125 137 53 2212 150 33 34 chr4 12324390 12324936 -171963726 + MLT2A2 LTR ERVL 3 544 -10 391 254 77 0 chr4 12325088 12325191 -171963471 - MIR3 SINE MIR -51 157 54 180 313 16 0 chr4 12326438 12326502 -171962160 + L2 LINE L2 3001 3065 -207 791 289 75 21 chr4 12326547 12326748 -171961914 + L2 LINE L2 2929 3156 -157 2656 112 18 50 chr4 12326748 12327187 -171961475 - MSTA LTR MaLR -1 427 3 791 289 75 21 chr4 12327187 12327317 -171961345 + L2 LINE L2 3156 3278 -35 315 71 0 0 chr4 12327379 12327421 -171961241 + (TGAA)n Simple_repeat Simple_repeat 4 45 0 302 345 0 0 chr4 12327444 12327528 -171961134 + L2 LINE L2 3187 3270 -2 477 292 182 15 chr4 12327557 12327701 -171960961 + L2 LINE L2 2715 2834 -479 3479 137 24 7 chr4 12327701 12328255 -171960407 + MER34B LTR ERV1 1 563 -2 477 292 182 15 chr4 12328255 12328620 -171960042 + L2 LINE L2 2834 3313 0 386 313 47 40 chr4 12328712 12328836 -171959826 + L2 LINE L2 3122 3249 -23 1673 167 46 0 chr4 12328836 12329118 -171959544 - AluJo SINE Alu -17 295 1 386 313 47 40 chr4 12329118 12329143 -171959519 + L2 LINE L2 3249 3272 0 1523 239 44 28 chr4 12329456 12329892 -171958770 + LTR47B LTR ERVL 1 443 0 610 191 0 0 chr4 12330478 12330583 -171958079 + MLT1D LTR MaLR 47 151 -354 995 237 19 0 chr4 12330816 12331031 -171957631 + MER20 DNA MER1_type 1 219 0 238 256 158 0 chr4 12331763 12331845 -171956817 + MIR SINE MIR 50 144 -118 325 86 35 0 chr4 12331884 12331942 -171956720 + (TTA)n Simple_repeat Simple_repeat 2 61 0 362 325 69 32 chr4 12332010 12332256 -171956406 + L2 LINE L2 2674 2928 -386 325 250 60 30 chr4 12333082 12333182 -171955480 + MIR SINE MIR 159 261 -1 183 100 0 0 chr4 12333182 12333212 -171955450 + (ATG)n Simple_repeat Simple_repeat 2 31 0 181 235 59 47 chr4 12334936 12335021 -171953641 + L2 LINE L2 2672 2757 -557 231 219 21 125 chr4 12335350 12335446 -171953216 + L2 LINE L2 3223 3308 -5 789 229 124 40 chr4 12335517 12335941 -171952721 + MLT1C LTR MaLR 1 467 0 211 261 46 15 chr4 12336405 12336470 -171952192 + MIR SINE MIR 29 95 -167 631 245 13 50 chr4 12336605 12336764 -171951898 - FRAM SINE Alu -13 153 1 21 0 0 0 chr4 12336771 12336792 -171951870 + AT_rich Low_complexity Low_complexity 1 21 0 1860 182 71 35 chr4 12336972 12337423 -171951239 - MLT1C LTR MaLR 0 467 1 305 281 176 7 chr4 12337423 12337576 -171951086 + MIR SINE MIR 14 192 -70 358 193 108 0 chr4 12337803 12337886 -171950776 - MIR3 SINE MIR -25 183 92 324 250 0 29 chr4 12338730 12338834 -171949828 + LTR33 LTR ERVL 414 514 -7 270 281 11 0 chr4 12338848 12338994 -171949668 + L2 LINE L2 3194 3306 -7 1296 259 89 44 chr4 12339056 12339538 -171949124 + MLT1H LTR MaLR 4 549 0 279 333 104 5 chr4 12339578 12339770 -171948892 + L2 LINE L2 2636 2846 -468 281 230 40 54 chr4 12339895 12339969 -171948693 - MER91B DNA MER1_type 0 190 118 203 233 0 0 chr4 12341105 12341148 -171947514 - MER91B DNA MER1_type -153 43 1 320 269 96 10 chr4 12341290 12341394 -171947268 + MIR SINE MIR 18 130 -132 563 210 0 25 chr4 12341731 12341850 -171946812 + MER106B DNA MER1_type 36 151 -908 356 269 39 0 chr4 12341886 12341990 -171946672 + LTR33 LTR ERVL 354 461 -60 1581 160 11 4 chr4 12342011 12342311 -171946351 + AluJo SINE Alu 18 319 0 218 213 21 0 chr4 12342885 12342932 -171945730 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 236 269 75 0 chr4 12343741 12343808 -171944854 + L2 LINE L2 3162 3233 -39 2213 255 63 44 chr4 12343856 12344565 -171944097 + MER21B LTR ERV1 15 737 -126 192 211 0 0 chr4 12344665 12344703 -171943959 + L2 LINE L2 3272 3309 -4 197 253 193 0 chr4 12344714 12344797 -171943865 - L2 LINE L2 -13 3300 3202 381 102 0 0 chr4 12345037 12345096 -171943566 + (TG)n Simple_repeat Simple_repeat 1 59 0 552 249 85 6 chr4 12346878 12347043 -171941619 - MER5B DNA MER1_type 0 178 1 348 253 22 18 chr4 12347196 12347368 -171941294 - MER58 DNA MER1_type 0 2420 20 482 368 0 0 chr4 12347368 12347539 -171941123 + L3 LINE CR1 1405 1575 -2 272 388 26 0 chr4 12348036 12348152 -171940510 + MIR SINE MIR 20 138 -124 2022 69 0 4 chr4 12348152 12348412 -171940250 + AluY SINE Alu 43 301 -10 258 32 0 0 chr4 12348816 12348847 -171939815 + (CA)n Simple_repeat Simple_repeat 2 32 0 281 148 74 0 chr4 12348901 12348955 -171939707 + MIR SINE MIR 203 260 -2 437 386 73 0 chr4 12349048 12349268 -171939394 + MIR SINE MIR 20 255 -7 459 297 179 16 chr4 12349562 12349875 -171938787 + MLT1J2 LTR MaLR 87 450 0 662 240 0 39 chr4 12349986 12350140 -171938522 - AluJo SINE Alu -44 268 121 4252 74 7 4 chr4 12350316 12350867 -171937795 + L1PA10 LINE L1 5606 6158 -10 427 244 53 38 chr4 12351284 12351415 -171937247 - L2 LINE L2 -1 3312 3180 1014 225 14 19 chr4 12351424 12351633 -171937029 + MER58A DNA MER1_type 9 216 -8 252 265 0 15 chr4 12351753 12351821 -171936841 - L2 LINE L2 -236 3077 3011 196 221 58 58 chr4 12351818 12351904 -171936758 + L2 LINE L2 3183 3268 -45 * 434 63 0 16 chr4 12352108 12352171 -171936491 + (TG)n Simple_repeat Simple_repeat 1 62 0 300 321 19 19 chr4 12352548 12352654 -171936008 - MIR SINE MIR -56 152 47 183 352 23 0 chr4 12352792 12352880 -171935782 + MIR SINE MIR 173 262 0 554 317 7 40 chr4 12353337 12353587 -171935075 + MIR SINE MIR 7 249 -13 189 288 41 14 chr4 12353588 12353661 -171935001 - MIR SINE MIR -3 259 185 2203 55 4 7 chr4 12353669 12353941 -171934721 + L1PA7 LINE L1 5865 6135 -19 291 54 0 0 chr4 12353941 12353978 -171934684 + (TA)n Simple_repeat Simple_repeat 2 38 0 221 348 185 0 chr4 12354261 12354396 -171934266 - L2 LINE L2 -186 3086 2927 390 259 72 126 chr4 12354599 12354947 -171933715 - L2 LINE L2 0 3272 2944 248 309 48 33 chr4 12355519 12355654 -171933008 + MIR SINE MIR 26 171 -37 557 246 123 0 chr4 12355703 12355882 -171932780 - MIR SINE MIR -44 218 18 689 258 6 18 chr4 12355932 12356099 -171932563 - MIR3 SINE MIR -14 194 30 355 337 0 8 chr4 12357058 12357178 -171931484 + MIR SINE MIR 37 154 -63 282 283 62 35 chr4 12357259 12357404 -171931258 - MIR SINE MIR -94 168 20 488 370 40 9 chr4 12358167 12358391 -171930271 + MIR SINE MIR 20 250 -12 394 254 8 51 chr4 12358427 12358545 -171930117 + MIR3 SINE MIR 48 160 -48 1013 198 20 20 chr4 12358548 12358750 -171929912 - MIR SINE MIR -3 259 58 181 333 97 0 chr4 12358965 12359037 -171929625 + L2 LINE L2 3193 3271 -1 390 108 0 0 chr4 12359219 12359284 -171929378 + (GGGA)n Simple_repeat Simple_repeat 1 65 0 714 290 84 9 chr4 12359728 12360166 -171928496 + L1ME4a LINE L1 5603 6073 -48 2487 240 113 10 chr4 12361366 12362619 -171926043 - L1ME1 LINE L1 -5 6161 4753 794 279 82 9 chr4 12362624 12362857 -171925805 - MIR SINE MIR -10 252 3 391 256 0 26 chr4 12363038 12363155 -171925507 + MLT1B LTR MaLR 3 116 -274 * 1676 194 29 62 chr4 12363154 12363301 -171925361 + MLT1C LTR MaLR 64 214 -253 1926 120 3 43 chr4 12363301 12363600 -171925062 + AluSx SINE Alu 18 304 -8 1676 194 29 62 chr4 12363600 12363870 -171924792 + MLT1C LTR MaLR 214 467 0 297 128 0 0 chr4 12364657 12364704 -171923958 + (TC)n Simple_repeat Simple_repeat 1 47 0 2577 105 16 13 chr4 12366303 12366676 -171921986 - THE1C LTR MaLR -1 374 1 245 232 126 53 chr4 12367142 12367237 -171921425 + L2 LINE L2 2641 2742 -572 450 139 0 0 chr4 12367243 12367329 -171921333 + L1 LINE L1 5154 5239 -907 338 342 38 33 chr4 12367480 12367664 -171920998 + LTR33 LTR ERVL 94 278 -243 332 319 43 27 chr4 12367811 12367999 -171920663 + L2 LINE L2 3050 3240 -73 1241 196 63 14 chr4 12368158 12368580 -171920082 - MLT1C LTR MaLR -6 461 1 564 233 101 49 chr4 12368580 12368820 -171919842 - MIR SINE MIR -4 258 4 216 228 18 0 chr4 12369407 12369464 -171919198 + (TA)n Simple_repeat Simple_repeat 2 59 0 303 256 83 39 chr4 12369464 12369620 -171919042 - L1MCa LINE L1 -4350 2076 1914 263 134 73 12 chr4 12369628 12369710 -171918952 + (TA)n Simple_repeat Simple_repeat 1 87 0 2714 168 39 14 chr4 12369814 12370307 -171918355 - MLT1D LTR MaLR 0 505 1 379 336 23 8 chr4 12370318 12370446 -171918216 - MIR SINE MIR -113 149 20 186 347 0 0 chr4 12370627 12370702 -171917960 + L2 LINE L2 2979 3053 -219 237 271 98 33 chr4 12370971 12371093 -171917569 + L2 LINE L2 3136 3265 -7 291 222 136 25 chr4 12371564 12371645 -171917017 + MIR SINE MIR 63 144 -64 696 308 36 18 chr4 12371733 12371954 -171916708 - MIR SINE MIR 0 262 38 304 252 113 63 chr4 12372117 12372276 -171916386 + L1ME4a LINE L1 5827 5993 -128 451 282 8 17 chr4 12372936 12373053 -171915609 - MIR SINE MIR -120 142 27 35 0 0 0 chr4 12374206 12374241 -171914421 + AT_rich Low_complexity Low_complexity 1 35 0 1567 38 0 0 chr4 12374241 12374424 -171914238 - L1PA5 LINE L1 -9 6145 5963 244 150 25 0 chr4 12374447 12374487 -171914175 + MLT1J LTR MaLR 100 140 -371 242 241 13 13 chr4 12374580 12374659 -171914003 + MLT1J LTR MaLR 233 311 -200 579 298 56 0 chr4 12374668 12374846 -171913816 - MER91B DNA MER1_type 0 190 3 296 298 125 0 chr4 12374933 12375037 -171913625 + MER94 DNA DNA 12 128 -6 301 252 143 8 chr4 12375038 12375157 -171913505 + MLT1J LTR MaLR 376 510 -1 272 292 124 0 chr4 12375166 12375279 -171913383 + MIR SINE MIR 18 144 -64 2450 85 3 3 chr4 12376511 12376839 -171911823 + L1PA7 LINE L1 5825 6152 -2 425 356 71 8 chr4 12377262 12377501 -171911161 + MIR SINE MIR 9 262 0 3617 31 0 0 chr4 12377558 12377983 -171910679 + L1PA4 LINE L1 5731 6155 0 2268 149 42 114 chr4 12378391 12378935 -171909727 + MLT1D LTR MaLR 1 505 0 273 29 0 0 chr4 12378975 12379009 -171909653 + (TG)n Simple_repeat Simple_repeat 1 34 0 438 108 0 0 chr4 12379009 12379083 -171909579 + (GA)n Simple_repeat Simple_repeat 2 75 0 367 195 176 19 chr4 12379653 12379824 -171908838 - MIR SINE MIR -58 150 18 294 264 18 55 chr4 12380752 12380862 -171907800 - MIR SINE MIR -83 125 20 2228 103 7 0 chr4 12380920 12381211 -171907451 - AluSp SINE Alu -20 293 1 397 312 21 14 chr4 12381237 12381378 -171907284 - MIR SINE MIR -107 155 14 281 257 54 14 chr4 12382268 12382342 -171906320 - MIR SINE MIR -79 183 107 2259 115 7 0 chr4 12383001 12383306 -171905356 - AluSx SINE Alu -4 308 2 991 197 14 9 chr4 12383396 12383609 -171905053 + MER20 DNA MER1_type 1 214 -5 368 248 139 16 chr4 12383699 12383828 -171904834 + MIR SINE MIR 84 228 -34 314 274 42 21 chr4 12384180 12384275 -171904387 + MIR SINE MIR 28 124 -138 193 330 17 17 chr4 12384353 12384471 -171904191 - MIR SINE MIR -68 140 23 449 284 90 0 chr4 12385316 12385450 -171903212 - L3 LINE CR1 -28 1549 1404 439 281 16 23 chr4 12385870 12385998 -171902664 - MIR SINE MIR -108 154 28 535 269 67 7 chr4 12386363 12386512 -171902150 - MIR3 SINE MIR -22 186 29 209 271 105 60 chr4 12386719 12386852 -171901810 + L3 LINE CR1 1432 1570 -7 1236 63 0 1 chr4 12387695 12387877 -171900785 - L1PA10 LINE L1 -305 5863 5706 2251 72 17 0 chr4 12387883 12388167 -171900495 + L1PA10 LINE L1 5872 6168 0 244 277 102 17 chr4 12388346 12388523 -171900139 + LTR16A LTR ERVL 259 450 0 3139 106 81 50 chr4 12388924 12389507 -171899155 + LTR18B LTR ERVL 1 601 -13 298 250 70 47 chr4 12389514 12389642 -171899020 + L2 LINE L2 2935 3065 -207 188 270 14 27 chr4 12389739 12389813 -171898849 - L2 LINE L2 -24 3248 3176 300 275 135 35 chr4 12390033 12390233 -171898429 + LTR16C LTR ERVL 171 390 -101 304 275 58 0 chr4 12390308 12390428 -171898234 + LTR16C LTR ERVL 353 479 -12 481 324 131 9 chr4 12391122 12391344 -171897318 + MIR SINE MIR 14 262 0 437 343 81 12 chr4 12392047 12392219 -171896443 + MIR SINE MIR 55 238 -24 1377 207 106 71 chr4 12392324 12392708 -171895954 + MLT1C LTR MaLR 1 403 -64 2270 107 13 0 chr4 12392708 12393007 -171895655 - AluSq SINE Alu -10 303 1 1377 207 106 71 chr4 12393007 12393057 -171895605 + MLT1C LTR MaLR 403 450 -17 485 254 82 65 chr4 12393508 12393677 -171894985 + Charlie7 DNA MER1_type 238 414 -2198 697 186 0 64 chr4 12393677 12393817 -171894845 + FLAM_A SINE Alu 1 131 -2 485 254 82 65 chr4 12393817 12393879 -171894783 + Charlie7 DNA MER1_type 414 473 -2139 1034 238 83 79 chr4 12393931 12394140 -171894522 + Charlie7 DNA MER1_type 1674 1881 -731 2189 98 0 7 chr4 12394140 12394453 -171894209 + AluSx SINE Alu 1 311 0 1034 238 83 79 chr4 12394453 12394784 -171893878 + Charlie7 DNA MER1_type 1881 2217 -395 337 305 11 21 chr4 12394828 12394923 -171893739 - MIR SINE MIR -52 210 117 556 215 45 44 chr4 12395462 12395754 -171892908 - MLT1A2 LTR MaLR -3 371 1 241 242 32 0 chr4 12395807 12395869 -171892793 + CT-rich Low_complexity Low_complexity 3 66 0 487 339 92 0 chr4 12396382 12396621 -171892041 + L3 LINE CR1 1284 1544 -33 220 268 0 36 chr4 12397170 12397226 -171891436 - L2 LINE L2 -20 3293 3240 732 42 0 0 chr4 12397604 12397700 -171890962 + (TC)n Simple_repeat Simple_repeat 2 97 0 315 0 0 0 chr4 12397699 12397734 -171890928 + (TA)n Simple_repeat Simple_repeat 2 36 0 * 1297 266 54 36 chr4 12398034 12398425 -171890237 - L2 LINE L2 -1 3312 2915 189 232 101 0 chr4 12399033 12399102 -171889560 - MIR SINE MIR -92 116 41 275 240 150 30 chr4 12399259 12399359 -171889303 + MIR SINE MIR 76 148 -60 1769 174 70 88 chr4 12399385 12399897 -171888765 - MLT1D LTR MaLR -2 503 1 251 308 105 58 chr4 12400259 12400378 -171888284 - MIR3 SINE MIR -26 182 51 4868 95 6 0 chr4 12400378 12401033 -171887629 - L1PA8 LINE L1 0 6172 5514 251 308 105 58 chr4 12401033 12401085 -171887577 - MIR3 SINE MIR -157 51 3 257 301 24 0 chr4 12401229 12401312 -171887350 - MIR3 SINE MIR -24 184 100 737 185 7 7 chr4 12401829 12401980 -171886682 + MLT1A1 LTR MaLR 1 151 -214 280 336 19 9 chr4 12402044 12402151 -171886511 - MIR SINE MIR -68 140 33 2565 78 0 0 chr4 12403997 12404306 -171884356 - AluY SINE Alu -2 309 1 280 327 29 10 chr4 12404410 12404514 -171884148 + MIR SINE MIR 37 142 -66 264 188 42 0 chr4 12404773 12404821 -171883841 + MLT1A1 LTR MaLR 111 160 -389 636 277 32 11 chr4 12405240 12405428 -171883234 + MIR SINE MIR 25 216 -46 269 245 0 3 chr4 12406347 12406420 -171882242 + MIR SINE MIR 89 147 -61 450 282 15 0 chr4 12406674 12406805 -171881857 - MIR SINE MIR -48 214 82 228 306 25 25 chr4 12407065 12407186 -171881476 + MIR SINE MIR 106 226 -36 784 204 10 40 chr4 12409199 12409400 -171879262 + L1MB7 LINE L1 5964 6158 -26 601 256 39 55 chr4 12410900 12411154 -171877508 + MIR SINE MIR 13 262 0 251 359 50 11 chr4 12411155 12411336 -171877326 - MIR SINE MIR -48 214 27 180 283 0 0 chr4 12411565 12411611 -171877051 + L2 LINE L2 3268 3313 0 2045 230 46 53 chr4 12413210 12413780 -171874882 + MER74B LTR ERVL 57 622 0 693 250 17 11 chr4 12413972 12414148 -171874514 - MER5B DNA MER1_type -1 177 1 1118 272 40 13 chr4 12414224 12414603 -171874059 + LTR16A LTR ERVL 62 450 0 776 171 0 0 chr4 12414649 12414778 -171873884 + MER31A LTR ERV1 1 129 -356 222 254 0 0 chr4 12414967 12415022 -171873640 + L2 LINE L2 3218 3272 0 4114 149 40 7 chr4 12416220 12417036 -171871626 + L1MA4A LINE L1 5380 6283 -20 350 290 0 69 chr4 12417509 12417640 -171871022 + MIR SINE MIR 20 141 -121 1822 159 164 13 chr4 12417689 12418026 -171870636 + MSTA LTR MaLR 1 400 -28 1757 156 33 0 chr4 12418026 12418302 -171870360 - AluJb SINE Alu -15 297 13 1822 159 164 13 chr4 12418302 12418336 -171870326 + MSTA LTR MaLR 400 428 0 211 308 22 11 chr4 12418363 12418454 -171870208 + L3 LINE CR1 1480 1571 -6 404 260 49 73 chr4 12418894 12419098 -171869564 + MIR SINE MIR 28 226 -36 1813 176 16 16 chr4 12419106 12419281 -171869381 - AluJb SINE Alu -6 306 132 231 36 0 0 chr4 12419281 12419309 -171869353 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2058 117 4 0 chr4 12419309 12419590 -171869072 - AluSp SINE Alu -31 282 1 1813 176 16 16 chr4 12419590 12419719 -171868943 - AluJb SINE Alu -178 134 1 4283 124 14 9 chr4 12420263 12420908 -171867754 + MER50 LTR ERV1 59 706 -28 236 197 0 121 chr4 12420959 12421025 -171867637 - MER5A DNA MER1_type -64 125 68 2327 99 0 3 chr4 12421027 12421331 -171867331 - AluSq SINE Alu 0 313 11 2257 100 19 13 chr4 12421364 12421673 -171866989 + AluY SINE Alu 1 311 0 206 292 14 28 chr4 12421712 12421784 -171866878 + L3 LINE CR1 1411 1481 -96 2764 239 104 63 chr4 12422449 12423478 -171865184 + HAL1 LINE L1 659 1760 -747 2508 73 6 12 chr4 12423478 12423821 -171864841 + L1PA7 LINE L1 5814 6154 0 2764 239 104 63 chr4 12423821 12424171 -171864491 + HAL1 LINE L1 1760 2094 -413 1309 105 16 174 chr4 12424267 12424572 -171864090 + AluSq SINE Alu 46 302 -11 470 256 48 35 chr4 12424615 12424842 -171863820 + HAL1 LINE L1 2276 2505 -2 666 277 13 22 chr4 12426121 12426345 -171862317 - MIR SINE MIR -37 225 4 6658 89 8 6 chr4 12426410 12427894 -171860768 + L1PA10 LINE L1 4672 6166 -2 341 337 52 23 chr4 12428026 12428198 -171860464 + L2 LINE L2 2896 3072 -200 1712 142 36 26 chr4 12428204 12428506 -171860156 - THE1B LTR MaLR -59 305 1 237 267 34 68 chr4 12428939 12429085 -171859577 - MER5A DNA MER1_type 0 189 49 360 212 8 102 chr4 12429372 12429490 -171859172 - MER5A DNA MER1_type -77 112 6 194 248 142 35 chr4 12430029 12430142 -171858520 + MIR SINE MIR 18 142 -66 583 259 33 58 chr4 12430194 12430437 -171858225 - MIR SINE MIR -4 258 22 256 302 81 23 chr4 12430949 12431121 -171857541 + L1ME4a LINE L1 3364 3545 -2601 230 154 0 0 chr4 12431182 12431221 -171857441 + MLT1D LTR MaLR 467 505 0 396 291 35 82 chr4 12431314 12431537 -171857125 + L1ME4a LINE L1 5522 5727 -394 1924 149 10 0 chr4 12431537 12431832 -171856830 + AluSx SINE Alu 1 298 -14 396 291 35 82 chr4 12431832 12431927 -171856735 + L1ME4a LINE L1 5727 5825 -296 231 222 0 67 chr4 12432225 12432315 -171856347 - L1M4 LINE L1 -1497 4649 4566 1166 166 81 110 chr4 12432524 12433278 -171855384 + LTR2B-int LTR ERV1 1546 3482 -3116 927 174 14 43 chr4 12433545 12433752 -171854910 + LTR2B-int LTR ERV1 3536 3736 -2862 1410 185 136 84 chr4 12433820 12434673 -171853989 + LTR2B-int LTR ERV1 2477 4646 -1685 1462 296 41 35 chr4 12434691 12434727 -171853935 + L1PBa LINE L1 3 37 -6826 2530 112 31 8 chr4 12434727 12435083 -171853579 - THE1B LTR MaLR 0 364 1 1462 296 41 35 chr4 12435083 12435722 -171852940 + L1PBa LINE L1 37 682 -6181 1888 241 45 46 chr4 12435750 12435871 -171852791 + LTR2B-int LTR ERV1 4245 4365 -506 3396 82 43 39 chr4 12435871 12436359 -171852303 + LTR2B LTR ERV1 1 490 0 1888 241 45 46 chr4 12436359 12436864 -171851798 + LTR2B-int LTR ERV1 4365 4870 -1 2582 154 15 42 chr4 12436864 12437319 -171851343 + MER65A LTR ERV1 1 443 -2 10751 183 42 7 chr4 12437736 12438622 -171850040 + L1PA16 LINE L1 2761 3615 -2551 3259 55 12 2 chr4 12438622 12439039 -171849623 + L1PA4 LINE L1 5735 6155 0 10751 183 42 7 chr4 12439039 12441427 -171847235 + L1PA16 LINE L1 3615 6156 -10 211 292 143 37 chr4 12442022 12442238 -171846424 + L2 LINE L2 2354 2592 -722 333 222 50 20 chr4 12442451 12442550 -171846112 + Charlie8 DNA MER1_type 71 172 -2245 300 53 0 0 chr4 12442694 12442732 -171845930 + (CCCCCT)n Simple_repeat Simple_repeat 1 38 0 276 288 0 0 chr4 12443036 12443102 -171845560 + L2 LINE L2 3248 3313 0 234 231 31 0 chr4 12443304 12443369 -171845293 - MIR SINE MIR -60 148 82 369 137 68 0 chr4 12444003 12444076 -171844586 + L1MB4 LINE L1 6103 6180 0 225 160 208 47 chr4 12444490 12444596 -171844066 + L2 LINE L2 3167 3289 -24 288 296 65 42 chr4 12444954 12445170 -171843492 + L2 LINE L2 2836 3056 -216 230 267 3 3 chr4 12445215 12445277 -171843385 - MIR SINE MIR -113 95 34 337 235 0 0 chr4 12446450 12446518 -171842144 + L2 LINE L2 3205 3272 0 245 241 86 52 chr4 12448416 12448532 -171840130 + L2 LINE L2 3194 3313 0 538 309 122 28 chr4 12448543 12448896 -171839766 + L2 LINE L2 2928 3313 0 1010 193 11 21 chr4 12449823 12450010 -171838652 + MER58A DNA MER1_type 37 221 -3 199 273 18 0 chr4 12450624 12450679 -171837983 - MIR SINE MIR -55 153 98 514 189 8 8 chr4 12450734 12450856 -171837806 + CT-rich Low_complexity Low_complexity 3 124 0 649 152 203 19 chr4 12450912 12451070 -171837592 - MLT1B LTR MaLR -203 187 1 223 159 0 0 chr4 12451651 12451695 -171836967 + L2 LINE L2 3269 3312 -1 579 66 0 0 chr4 12452318 12452394 -171836268 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 1294 225 117 9 chr4 12453115 12453440 -171835222 - MLT1A1 LTR MaLR -3 362 3 2257 108 0 0 chr4 12453474 12453771 -171834891 + AluY SINE Alu 1 297 -14 249 303 67 0 chr4 12454488 12454577 -171834085 - LTR16A LTR ERVL -346 104 10 692 271 61 33 chr4 12455768 12455982 -171832680 + MIR SINE MIR 19 238 -24 1768 269 105 40 chr4 12456094 12456189 -171832473 - L2 LINE L2 -1048 2266 2179 2290 128 0 0 chr4 12456189 12456494 -171832168 + AluSx SINE Alu 1 305 -7 1768 269 105 40 chr4 12456494 12457150 -171831512 - L2 LINE L2 -1135 2179 1466 278 255 75 11 chr4 12457158 12457252 -171831410 + MIR SINE MIR 106 205 -57 278 271 79 50 chr4 12457756 12457896 -171830766 + MIR3 SINE MIR 58 201 -7 3838 209 23 62 chr4 12458009 12459017 -171829645 - LTR5 LTR ERVK 0 969 1 1264 151 11 1 chr4 12459252 12459624 -171829038 - MSTB LTR MaLR 0 426 1 538 260 24 8 chr4 12460021 12460167 -171828495 + MLT1H1 LTR MaLR 437 555 0 230 364 45 0 chr4 12460229 12460339 -171828323 - MIR3 SINE MIR -17 191 77 1090 242 28 3 chr4 12460341 12460697 -171827965 - L1 LINE L1 -2751 3395 3031 279 253 0 0 chr4 12462231 12462310 -171826352 + (ATGGTG)n Simple_repeat Simple_repeat 2 80 0 720 222 0 0 chr4 12462343 12462523 -171826139 + (TGG)n Simple_repeat Simple_repeat 1 180 0 725 212 6 0 chr4 12462547 12462726 -171825936 + (TGG)n Simple_repeat Simple_repeat 1 180 0 578 281 22 16 chr4 12462734 12462919 -171825743 - MIR SINE MIR -1 261 76 2399 87 7 0 chr4 12463237 12463535 -171825127 - AluSp SINE Alu -11 302 3 212 186 0 23 chr4 12463742 12463785 -171824877 + CT-rich Low_complexity Low_complexity 2 43 0 231 244 47 122 chr4 12464132 12464215 -171824447 - MIR SINE MIR 0 262 196 2153 106 7 0 chr4 12464215 12464525 -171824137 - AluSp SINE Alu 0 312 1 231 244 47 122 chr4 12464525 12464612 -171824050 - MIR SINE MIR -66 196 104 306 276 58 19 chr4 12464928 12465084 -171823578 + MLT1H LTR MaLR 347 508 -41 414 187 0 0 chr4 12465084 12465159 -171823503 - AluJ/FRAM SINE Alu -12 300 226 221 219 0 0 chr4 12465235 12465276 -171823386 - MIR SINE MIR -209 53 13 192 268 0 0 chr4 12465282 12465323 -171823339 + MIR SINE MIR 104 144 -64 213 65 0 0 chr4 12465779 12465810 -171822852 + (GA)n Simple_repeat Simple_repeat 1 31 0 428 301 182 7 chr4 12465822 12465965 -171822697 - MIR SINE MIR -75 187 20 604 282 253 2 chr4 12466177 12466647 -171822015 + L2 LINE L2 2707 3312 -1 502 219 18 0 chr4 12467458 12467572 -171821090 - LTR33A LTR ERVL -6 517 402 468 203 472 8 chr4 12467568 12467922 -171820740 - LTR50 LTR ERVL -277 518 1 * 186 133 0 0 chr4 12467943 12467973 -171820689 + (TCCC)n Simple_repeat Simple_repeat 4 33 0 302 274 0 0 chr4 12467980 12468053 -171820609 + HsTC2 DNA Tc2 1828 1900 0 311 311 66 19 chr4 12468200 12468306 -171820356 + MIR SINE MIR 34 144 -64 707 295 5 34 chr4 12468309 12468469 -171820193 - MIR SINE MIR -2 260 106 2300 123 0 0 chr4 12468469 12468777 -171819885 - AluSx SINE Alu -4 308 1 707 295 5 34 chr4 12468777 12468823 -171819839 - MIR SINE MIR -156 106 60 994 144 0 0 chr4 12469068 12469214 -171819448 + AluSg/x SINE Alu 166 311 -1 1433 291 35 22 chr4 12469214 12469675 -171818987 - L2 LINE L2 -412 2902 2436 290 330 193 5 chr4 12470124 12470342 -171818320 + L3 LINE CR1 1131 1389 -188 1581 273 111 6 chr4 12470378 12470927 -171817735 + L2 LINE L2 899 1505 -1809 808 307 175 15 chr4 12470932 12471560 -171817102 + L2 LINE L2 2577 3311 -2 325 405 76 0 chr4 12471678 12471836 -171816826 - L2 LINE L2 -1 3271 3102 775 255 113 20 chr4 12472297 12472650 -171816012 + LTR16A1 LTR ERVL 58 443 -14 329 167 56 22 chr4 12472839 12472929 -171815733 + MLT1K LTR MaLR 338 430 -158 1544 179 73 20 chr4 12472949 12473290 -171815372 + MLT1B LTR MaLR 32 390 0 235 281 237 7 chr4 12473459 12473594 -171815068 + MLT1K LTR MaLR 10 175 -413 1122 175 53 10 chr4 12473678 12473884 -171814778 - MER20 DNA MER1_type 0 219 5 627 217 111 32 chr4 12473969 12474186 -171814476 + MLT1K LTR MaLR 338 571 -17 202 316 38 25 chr4 12474222 12474301 -171814361 - MIR SINE MIR -70 192 113 386 237 41 10 chr4 12474414 12474511 -171814151 + L2 LINE L2 3173 3272 0 224 343 127 30 chr4 12474593 12474734 -171813928 + L3 LINE CR1 1293 1454 -123 243 103 0 0 chr4 12474734 12474773 -171813889 + (ATG)n Simple_repeat Simple_repeat 3 41 0 224 343 127 30 chr4 12474773 12474797 -171813865 + L3 LINE CR1 1454 1474 -103 364 329 105 0 chr4 12474820 12474972 -171813690 - MIR SINE MIR -49 213 46 189 325 0 26 chr4 12474992 12475069 -171813593 + L3 LINE CR1 1400 1474 -103 198 191 0 0 chr4 12475898 12475940 -171812722 + T-rich Low_complexity Low_complexity 1 42 0 272 289 67 81 chr4 12475965 12476125 -171812537 - MIR SINE MIR -61 147 4 203 369 10 10 chr4 12476418 12476521 -171812141 + MIR SINE MIR 38 140 -68 588 241 25 44 chr4 12477095 12477253 -171811409 - MIR SINE MIR -74 188 34 400 278 18 41 chr4 12477507 12477676 -171810986 + L1MC4a LINE L1 5697 5861 -1947 486 292 73 36 chr4 12477687 12478016 -171810646 + LTR33 LTR ERVL 10 350 -171 354 224 56 28 chr4 12478455 12478562 -171810100 - L1M4 LINE L1 -968 5178 5069 359 252 165 0 chr4 12478595 12478698 -171809964 - MIR SINE MIR -62 146 27 2135 129 0 0 chr4 12478779 12479066 -171809596 + AluSx SINE Alu 5 291 -21 796 230 79 3 chr4 12479115 12479457 -171809205 + L1ME3A LINE L1 5101 5462 -712 192 241 37 19 chr4 12479485 12479539 -171809123 + MER5A DNA MER1_type 132 186 -3 395 267 205 2 chr4 12479642 12479794 -171808868 + MIR SINE MIR 17 192 -37 783 315 57 34 chr4 12479863 12480307 -171808355 + L1ME3A LINE L1 5497 5951 -219 1160 164 0 60 chr4 12480447 12480679 -171807983 - AluJo SINE Alu -54 258 41 1063 296 70 52 chr4 12480848 12481420 -171807242 - L2 LINE L2 -337 2977 2396 212 293 253 0 chr4 12481605 12481704 -171806958 - L2 LINE L2 -4 3268 3145 487 325 105 34 chr4 12481716 12482134 -171806528 - MLT1L LTR MaLR 0 615 168 340 269 22 15 chr4 12482154 12482288 -171806374 + L2 LINE L2 2370 2504 -810 897 167 37 60 chr4 12482304 12482520 -171806142 + MLT1C LTR MaLR 1 211 -256 * 1829 181 5 73 chr4 12482516 12482924 -171805738 + MLT1B LTR MaLR 11 390 0 185 197 30 76 chr4 12482943 12483009 -171805653 + L2 LINE L2 2553 2615 -699 710 268 97 64 chr4 12483143 12483628 -171805034 + LTR67 LTR ERVL 3 503 -54 245 263 202 0 chr4 12483673 12483772 -171804890 - MIR SINE MIR -59 203 85 2199 126 0 0 chr4 12483928 12484230 -171804432 + AluSx SINE Alu 1 302 -10 218 304 174 31 chr4 12484232 12484393 -171804269 - L2 LINE L2 -10 3262 3079 494 330 60 14 chr4 12485209 12485424 -171803238 - MIR SINE MIR -26 236 12 948 293 78 5 chr4 12485682 12486064 -171802598 + MLT1J2 LTR MaLR 41 450 0 224 394 0 0 chr4 12486456 12486527 -171802135 - L2 LINE L2 -94 3178 3108 294 327 72 0 chr4 12486793 12486946 -171801716 - L2 LINE L2 -557 2757 2594 192 272 103 87 chr4 12487044 12487228 -171801434 + MIR3 SINE MIR 10 196 -12 * 721 242 101 0 chr4 12487200 12487378 -171801284 + MIR SINE MIR 53 248 -14 2657 192 18 38 chr4 12487987 12488560 -171800102 + MER68 LTR ERV1 1 561 -1 301 308 77 34 chr4 12489203 12489320 -171799342 + MIR SINE MIR 128 249 -13 393 330 100 10 chr4 12489797 12489997 -171798665 + L1ME4a LINE L1 5700 5917 -204 313 290 136 56 chr4 12490027 12490189 -171798473 + MIR SINE MIR 18 192 -70 1147 252 101 39 chr4 12491385 12491900 -171796762 + MER21B LTR ERV1 133 679 -184 195 239 43 0 chr4 12491935 12491981 -171796681 - L2 LINE L2 -34 3238 3191 213 238 0 0 chr4 12493024 12493066 -171795596 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 815 236 32 18 chr4 12493310 12493530 -171795132 + MER58A DNA MER1_type 1 223 -1 1153 270 104 40 chr4 12493753 12494400 -171794262 - L2 LINE L2 0 3313 2615 255 320 39 0 chr4 12494857 12494935 -171793727 + MIR SINE MIR 110 190 -72 205 335 77 29 chr4 12495982 12496152 -171792510 + L2 LINE L2 3034 3211 -61 583 255 28 31 chr4 12496662 12496826 -171791836 + MIR SINE MIR 3 164 -61 989 213 84 17 chr4 12496890 12497186 -171791476 + MLT1A2 LTR MaLR 39 354 -20 691 246 54 35 chr4 12497627 12497830 -171790832 + MIR SINE MIR 35 241 -21 268 99 70 0 chr4 12498092 12498149 -171790513 + MER4D LTR ERV1 555 829 -41 334 262 47 9 chr4 12498394 12498501 -171790161 + L2 LINE L2 2965 3075 -197 2007 134 13 19 chr4 12499620 12499904 -171788758 + AluSx SINE Alu 1 284 -28 396 0 0 0 chr4 12499904 12499948 -171788714 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 2007 134 13 19 chr4 12499948 12499976 -171788686 + AluSx SINE Alu 284 311 -1 206 297 249 16 chr4 12500796 12500981 -171787681 - MIR SINE MIR -29 233 6 318 26 0 0 chr4 12501392 12501431 -171787231 + (TG)n Simple_repeat Simple_repeat 2 40 0 374 276 33 30 chr4 12501606 12501772 -171786890 + MIR SINE MIR 19 183 -63 2126 122 10 0 chr4 12503200 12503496 -171785166 - AluSx SINE Alu -13 299 1 301 303 14 15 chr4 12503496 12503626 -171785036 + MIR SINE MIR 64 189 -65 197 116 0 93 chr4 12504771 12504814 -171783848 + MIR SINE MIR 108 146 -116 2268 149 19 8 chr4 12505627 12506002 -171782660 + MLT1B LTR MaLR 5 383 -7 358 258 53 79 chr4 12506614 12506804 -171781858 + MIR SINE MIR 75 259 -3 579 274 139 58 chr4 12507600 12507722 -171780940 + L2 LINE L2 1602 1713 -1601 3280 185 19 36 chr4 12507722 12508119 -171780543 + L1MB5 LINE L1 5499 5880 -294 2269 89 3 0 chr4 12508119 12508423 -171780239 + AluSq SINE Alu 1 305 -8 3280 185 19 36 chr4 12508423 12508713 -171779949 + L1MB5 LINE L1 5880 6174 0 579 274 139 58 chr4 12508713 12508900 -171779762 + L2 LINE L2 1713 1936 -1378 1071 217 104 4 chr4 12509075 12509367 -171779295 - L1MA4 LINE L1 -1 6299 5979 440 321 55 14 chr4 12509765 12509983 -171778679 + MIR SINE MIR 20 246 -16 270 308 33 11 chr4 12510571 12510662 -171778000 - MER5A DNA MER1_type -42 147 55 1856 97 3 74 chr4 12510897 12511292 -171777370 - AluSq SINE Alu 0 313 2 1364 159 64 0 chr4 12511446 12511710 -171776952 + L1MA7 LINE L1 6010 6290 -1 1359 158 7 62 chr4 12511719 12512010 -171776652 + L1MC1 LINE L1 6039 6313 -20 211 349 45 8 chr4 12512146 12512278 -171776384 - MIR SINE MIR -15 247 111 290 277 194 55 chr4 12513364 12513729 -171774933 - L2 LINE L2 -1 3312 2897 191 356 78 0 chr4 12514231 12514346 -171774316 + MIR SINE MIR 85 208 -54 589 295 46 9 chr4 12515912 12516129 -171772533 + MIR SINE MIR 21 245 -17 270 276 0 81 chr4 12516135 12516258 -171772404 - MIR SINE MIR -76 132 19 2492 185 32 32 chr4 12516915 12517123 -171771539 + MLT2B3 LTR ERVL 1 208 -346 202 29 57 0 chr4 12517123 12517158 -171771504 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 2492 185 32 32 chr4 12517158 12517451 -171771211 + MLT2B3 LTR ERVL 207 502 -52 225 0 0 0 chr4 12517451 12517476 -171771186 + (TCCA)n Simple_repeat Simple_repeat 3 27 0 354 341 24 24 chr4 12517585 12517755 -171770907 + MIR SINE MIR 53 222 -40 424 297 118 11 chr4 12517892 12518155 -171770507 - L1ME4a LINE L1 -225 5896 5606 1171 208 140 39 chr4 12518450 12518758 -171769904 - L1MB7 LINE L1 -9 6175 5837 589 222 17 39 chr4 12518844 12519024 -171769638 + MER96B DNA MER1_type? 1 176 -241 1915 122 3 11 chr4 12519024 12519340 -171769322 + AluSx SINE Alu 1 314 0 2188 104 3 3 chr4 12519582 12519891 -171768771 + AluSx SINE Alu 1 309 -3 663 270 38 5 chr4 12520248 12520459 -171768203 - MER58A DNA MER1_type -3 221 4 427 270 107 83 chr4 12520765 12521187 -171767475 + L2 LINE L2 2322 2753 -561 180 176 0 0 chr4 12521220 12521254 -171767408 + GA-rich Low_complexity Low_complexity 3 36 0 298 305 13 93 chr4 12521388 12521539 -171767123 + L2 LINE L2 2905 3043 -229 312 300 204 5 chr4 12521842 12522018 -171766644 - MIR SINE MIR -49 213 1 2208 81 13 7 chr4 12523374 12523681 -171764981 + AluY SINE Alu 1 309 -2 8937 202 27 16 chr4 12523681 12526404 -171762258 + L1MB2 LINE L1 3368 6131 -40 1968 101 0 7 chr4 12526404 12526757 -171761905 - AluSx SINE Alu 0 351 1 8937 202 27 16 chr4 12526757 12526798 -171761864 + L1MB2 LINE L1 6131 6170 -1 1748 133 87 70 chr4 12527270 12527390 -171761272 - THE1C LTR MaLR 0 375 258 2251 109 0 0 chr4 12527390 12527702 -171760960 - AluSx SINE Alu 0 312 1 1748 133 87 70 chr4 12527702 12527950 -171760712 - THE1C LTR MaLR -117 258 1 1669 183 85 40 chr4 12527982 12528429 -171760233 + MLT1C LTR MaLR 1 467 0 1575 239 22 71 chr4 12528695 12529242 -171759420 + MLT2B1 LTR ERVL 1 520 0 512 271 53 16 chr4 12529422 12529610 -171759052 + LTR16A1 LTR ERVL 45 239 -218 890 339 37 3 chr4 12529646 12530024 -171758638 + ERVL LTR ERVL 1908 2298 -3466 725 332 35 12 chr4 12530070 12530389 -171758273 + ERVL LTR ERVL 2266 2591 -2405 257 296 133 56 chr4 12530413 12530805 -171757857 + L2 LINE L2 2244 2665 -649 355 188 129 24 chr4 12530864 12530949 -171757713 + L2 LINE L2 3200 3293 -20 301 295 16 33 chr4 12531323 12531445 -171757217 - L3 LINE CR1 -718 859 740 536 292 81 0 chr4 12531582 12531743 -171756919 + MIR SINE MIR 68 241 -21 4045 201 41 15 chr4 12531766 12532568 -171756094 - MER21B LTR ERV1 -20 843 21 265 275 66 22 chr4 12532570 12532661 -171756001 - MER21B LTR ERV1 -757 106 12 363 326 17 28 chr4 12532875 12533053 -171755609 - L3 LINE CR1 -214 1363 1188 630 276 131 75 chr4 12533062 12533365 -171755297 + L2 LINE L2 2433 2717 -596 2140 122 0 0 chr4 12533365 12533676 -171754986 + AluSx SINE Alu 1 311 -1 630 276 131 75 chr4 12533676 12534119 -171754543 + L2 LINE L2 2717 3219 -94 359 236 0 46 chr4 12534209 12534336 -171754326 + MLT1D LTR MaLR 19 91 -414 1964 70 0 12 chr4 12534336 12534595 -171754067 + AluY SINE Alu 32 287 -24 1327 174 53 91 chr4 12534619 12534701 -171753961 + MLT1D LTR MaLR 120 204 -301 1475 153 53 7 chr4 12534701 12534982 -171753680 + AluJb SINE Alu 11 304 -8 1327 174 53 91 chr4 12534982 12535295 -171753367 + MLT1D LTR MaLR 204 500 -5 244 278 56 0 chr4 12535967 12536039 -171752623 - HsTC2 DNA Tc2 -1810 88 13 902 143 0 0 chr4 12536431 12536564 -171752098 + FLAM_C SINE Alu 1 133 -10 1160 152 35 0 chr4 12536681 12536879 -171751783 - MER20 DNA MER1_type -1 218 14 2587 94 14 0 chr4 12537008 12537358 -171751304 + THE1A LTR MaLR 1 355 0 1607 189 61 66 chr4 12537422 12537450 -171751212 - MLT2D LTR ERVL -8 406 379 231 36 0 0 chr4 12537450 12537478 -171751184 + (TG)n Simple_repeat Simple_repeat 2 29 0 1607 189 61 66 chr4 12537478 12537514 -171751148 - MLT2D LTR ERVL -35 379 344 1629 182 0 7 chr4 12537514 12537810 -171750852 + AluJb SINE Alu 1 294 -18 1607 189 61 66 chr4 12537810 12538152 -171750510 - MLT2D LTR ERVL -70 344 1 367 269 64 35 chr4 12538279 12538450 -171750212 - MER5B DNA MER1_type -2 176 1 566 253 89 0 chr4 12538776 12538922 -171749740 - MIR SINE MIR -16 246 88 539 332 67 39 chr4 12538986 12539417 -171749245 + L1ME LINE L1 4153 4595 -1551 1426 213 138 79 chr4 12539794 12539943 -171748719 + MLT1E LTR MaLR 56 195 -398 1935 116 20 7 chr4 12539943 12540237 -171748425 + AluSx SINE Alu 1 298 -14 1426 213 138 79 chr4 12540237 12540593 -171748069 + MLT1E LTR MaLR 195 591 -2 271 283 26 71 chr4 12540596 12540709 -171747953 - L1ME3A LINE L1 -100 6070 5963 195 100 0 0 chr4 12541025 12541055 -171747607 + (CA)n Simple_repeat Simple_repeat 1 30 0 2213 121 0 0 chr4 12541437 12541750 -171746912 + AluSq SINE Alu 1 313 0 333 320 93 16 chr4 12541831 12542025 -171746637 + L1ME LINE L1 5495 5703 -418 243 238 24 48 chr4 12542240 12542324 -171746338 + MIR SINE MIR 51 132 -130 2170 222 55 18 chr4 12542925 12543470 -171745192 - L1ME3 LINE L1 -20 6142 5578 2144 138 49 42 chr4 12543500 12543828 -171744834 - L1MA5 LINE L1 -2 6298 5965 2081 120 10 0 chr4 12543828 12544136 -171744526 - AluY SINE Alu 0 311 1 2144 138 49 42 chr4 12544136 12544235 -171744427 - L1MA5 LINE L1 -335 5965 5868 1401 142 32 24 chr4 12544235 12544482 -171744180 + L1MA5 LINE L1 5619 5867 -433 982 168 0 0 chr4 12545600 12545761 -171742901 + FRAM SINE Alu 2 162 -14 228 265 10 82 chr4 12545780 12545878 -171742784 + L2 LINE L2 3220 3310 -3 1062 187 111 29 chr4 12545878 12545938 -171742724 + MER34 LTR ERV1 27 81 -461 2250 78 0 41 chr4 12545938 12546258 -171742404 + AluY SINE Alu 1 307 -4 1062 187 111 29 chr4 12546258 12546648 -171742014 + MER34 LTR ERV1 81 542 0 864 144 46 40 chr4 12546821 12546994 -171741668 + MER20 DNA MER1_type 44 217 -2 2024 122 6 10 chr4 12547104 12547416 -171741246 + AluSx SINE Alu 1 311 -1 862 170 0 0 chr4 12547448 12547589 -171741073 + FRAM SINE Alu 1 140 -36 269 225 25 12 chr4 12547898 12547978 -171740684 + GA-rich Low_complexity Low_complexity 2 82 0 32 43 0 0 chr4 12549460 12549506 -171739156 + AT_rich Low_complexity Low_complexity 1 46 0 259 232 73 24 chr4 12550030 12550112 -171738550 + L2 LINE L2 3030 3115 -157 233 326 43 0 chr4 12550247 12550339 -171738323 - MIR SINE MIR -1 261 166 1143 118 16 11 chr4 12550340 12550526 -171738136 + AluSc SINE Alu 111 297 -12 459 286 56 5 chr4 12550910 12551106 -171737556 + LTR33 LTR ERVL 297 502 -19 196 286 0 0 chr4 12551261 12551303 -171737359 - MIR SINE MIR -150 112 71 263 268 61 24 chr4 12551303 12551385 -171737277 + MIR SINE MIR 120 204 -58 579 146 133 26 chr4 12551405 12551556 -171737106 + MER53 DNA DNA 13 179 -10 575 167 108 25 chr4 12551559 12551679 -171736983 - FLAM_A SINE Alu -6 136 7 219 361 17 25 chr4 12551888 12552007 -171736655 - MIR SINE MIR -71 137 20 1684 226 179 16 chr4 12552812 12553459 -171735203 + Charlie1 DNA MER1_type 1978 2730 -31 203 152 0 0 chr4 12553730 12553763 -171734899 + (CA)n Simple_repeat Simple_repeat 1 33 0 352 326 34 7 chr4 12555370 12555517 -171733145 - MIR3 SINE MIR -15 193 43 406 217 147 0 chr4 12557008 12557137 -171731525 - MER20 DNA MER1_type -6 213 66 420 195 150 0 chr4 12558219 12558332 -171730330 + Charlie5 DNA MER1_type 2476 2605 -7 184 361 0 0 chr4 12561573 12561645 -171727017 - MIR SINE MIR -107 155 84 216 276 14 20 chr4 12562119 12562228 -171726434 + MIR SINE MIR 38 144 -64 295 235 12 0 chr4 12562293 12562374 -171726288 - MIR SINE MIR -129 133 52 358 264 241 23 chr4 12562449 12562623 -171726039 + MIR SINE MIR 46 257 -5 215 200 0 0 chr4 12563011 12563051 -171725611 + G-rich Low_complexity Low_complexity 1 40 0 252 265 88 10 chr4 12563987 12564089 -171724573 - MIR SINE MIR -44 218 109 306 357 0 0 chr4 12565289 12565387 -171723275 + MIR SINE MIR 51 148 -60 265 292 56 11 chr4 12567073 12567162 -171721500 + MER5B DNA MER1_type 86 178 0 1918 100 7 0 chr4 12570492 12570763 -171717899 - AluY SINE Alu -38 273 1 1284 225 175 22 chr4 12571200 12571605 -171717057 + MLT1C LTR MaLR 1 467 0 185 169 0 127 chr4 12571659 12571730 -171716932 - MIR SINE MIR -63 145 84 425 327 93 0 chr4 12581577 12581791 -171706871 + MIR SINE MIR 13 246 -16 288 268 111 3 chr4 12583577 12583675 -171704987 - MIR SINE MIR -62 146 57 1113 201 186 52 chr4 12583675 12584024 -171704638 + MSTD LTR MaLR 1 396 0 288 268 111 3 chr4 12584024 12584067 -171704595 - MIR SINE MIR -151 57 20 216 97 0 0 chr4 12584294 12584325 -171704337 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 513 32 0 0 chr4 12584618 12584681 -171703981 + (CA)n Simple_repeat Simple_repeat 1 63 0 451 105 232 17 chr4 12584863 12584984 -171703678 + MER30 DNA MER1_type 1 154 -76 1795 32 9 0 chr4 12585158 12585379 -171703283 - AluY SINE Alu -88 223 1 274 45 0 0 chr4 12586836 12586880 -171701782 - AluY SINE Alu 0 300 257 1830 54 0 0 chr4 12586880 12587101 -171701561 - AluY SINE Alu -90 221 1 381 58 0 0 chr4 12587138 12587190 -171701472 + (CA)n Simple_repeat Simple_repeat 2 53 0 338 290 65 16 chr4 12588654 12588778 -171699884 + MIR SINE MIR 23 152 -110 424 172 9 126 chr4 12589196 12589411 -171699251 - AluSp SINE Alu -3 310 121 431 265 115 60 chr4 12590298 12590532 -171698130 - MIR SINE MIR 0 262 16 30 0 0 0 chr4 12591634 12591664 -171696998 + AT_rich Low_complexity Low_complexity 1 30 0 297 315 36 30 chr4 12591795 12591960 -171696702 + MIR SINE MIR 97 262 0 346 354 0 54 chr4 12595086 12595233 -171693429 - L1ME LINE L1 -425 5696 5558 4231 225 53 35 chr4 12598482 12600035 -171688627 + L1 LINE L1 2273 3853 -2293 21 36 0 0 chr4 12600305 12600333 -171688329 + AT_rich Low_complexity Low_complexity 1 28 0 413 205 0 13 chr4 12600618 12600696 -171687966 + L1M3e LINE L1 189 265 -6765 1998 239 127 49 chr4 12600701 12601987 -171686675 + L1M3e LINE L1 1110 2490 -4547 21 0 0 0 chr4 12602899 12602920 -171685742 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr4 12603088 12603128 -171685534 + AT_rich Low_complexity Low_complexity 1 40 0 1310 219 138 79 chr4 12603537 12603686 -171684976 + MLT1E LTR MaLR 56 195 -398 1938 122 20 7 chr4 12603686 12603982 -171684680 + AluSx SINE Alu 1 300 -12 1310 219 138 79 chr4 12603982 12604338 -171684324 + MLT1E LTR MaLR 195 591 -2 23 0 0 0 chr4 12604482 12604505 -171684157 + AT_rich Low_complexity Low_complexity 1 23 0 31 0 0 0 chr4 12604729 12604760 -171683902 + AT_rich Low_complexity Low_complexity 1 31 0 689 178 46 46 chr4 12605711 12605885 -171682777 + MER20 DNA MER1_type 44 217 -2 1049 115 14 0 chr4 12605995 12606143 -171682519 + AluSq/x SINE Alu 1 150 -163 2552 241 58 22 chr4 12607833 12608619 -171680043 + L1ME1 LINE L1 5348 6162 -4 208 310 62 18 chr4 12610744 12610857 -171677805 + L2 LINE L2 2994 3111 -161 345 263 72 40 chr4 12611100 12611252 -171677410 - MIR SINE MIR -70 192 36 240 205 55 142 chr4 12612498 12612625 -171676037 + L2 LINE L2 2937 3052 -220 241 226 24 119 chr4 12612831 12612915 -171675747 - MER20 DNA MER1_type -143 76 1 248 207 52 0 chr4 12614081 12614139 -171674523 - MER20 DNA MER1_type -17 202 142 884 298 127 36 chr4 12614768 12615062 -171673600 - L2 LINE L2 -5 3308 3042 1838 157 10 19 chr4 12615062 12615374 -171673288 + AluSx SINE Alu 1 309 -3 884 298 127 36 chr4 12615374 12615923 -171672739 - L2 LINE L2 -271 3042 2316 219 184 0 0 chr4 12616939 12616977 -171671685 - MIR SINE MIR -60 148 111 263 229 27 64 chr4 12617628 12617717 -171670945 - MIR SINE MIR -41 167 80 599 111 0 0 chr4 12617783 12617873 -171670789 - 5S rRNA rRNA -31 90 1 42 100 0 0 chr4 12618493 12618633 -171670029 + GC_rich Low_complexity Low_complexity 1 140 0 23 0 0 0 chr4 12618972 12618995 -171669667 + GC_rich Low_complexity Low_complexity 1 23 0 494 185 127 25 chr4 12621768 12621925 -171666737 - LTR32 LTR ERVL 0 471 299 1106 214 139 8 chr4 12625921 12626281 -171662381 - MLT1C LTR MaLR 0 467 61 7154 74 46 2 chr4 12629365 12630293 -171658369 - LTR5 LTR ERVK 0 969 1 248 132 0 0 chr4 12631064 12631102 -171657560 + MLT2A1 LTR ERVL 342 379 -65 * 1735 93 81 51 chr4 12631098 12631431 -171657231 - MLT2A1 LTR ERVL -101 343 1 345 211 40 0 chr4 12639544 12639620 -171649042 - L1MCa LINE L1 -5051 1513 1435 269 194 222 28 chr4 12639707 12639815 -171648847 - L1MCa LINE L1 -5597 448 320 446 244 224 10 chr4 12640166 12640658 -171648004 - L1MB3 LINE L1 -8 6175 5583 2000 121 104 27 chr4 12644578 12644990 -171643672 - MLT2A1 LTR ERVL 0 444 1 1249 204 67 30 chr4 12648359 12648628 -171640034 + AluSx SINE Alu 5 283 -29 629 227 89 39 chr4 12650233 12650436 -171638226 - MER20 DNA MER1_type 0 219 7 1631 184 117 34 chr4 12671447 12671919 -171616743 - MER9 LTR ERVK 0 511 1 1463 217 93 15 chr4 12671922 12672497 -171616165 - HERVK9 LTR ERVK -3 7352 5635 339 239 100 80 chr4 12672498 12672749 -171615913 - HERVK9 LTR ERVK -686 4576 4321 12268 165 55 15 chr4 12672840 12675533 -171613129 - HERVK9 LTR ERVK -281 5635 3042 9648 163 47 17 chr4 12675531 12677496 -171611166 - HERVK9 LTR ERVK -4125 1791 1 * 1355 209 123 36 chr4 12677496 12677966 -171610696 - MER9 LTR ERVK 0 511 1 354 256 131 50 chr4 12680141 12680301 -171608361 - MER20 DNA MER1_type -42 177 5 274 310 60 25 chr4 12681668 12681868 -171606794 - ERVL LTR ERVL -2988 2776 2570 180 0 0 0 chr4 12683877 12683897 -171604765 + (T)n Simple_repeat Simple_repeat 1 20 0 1868 216 90 5 chr4 12685891 12686335 -171602327 - L1PA15 LINE L1 -16 6149 5668 2116 185 40 26 chr4 12686336 12686790 -171601872 - MER66B LTR ERV1 0 486 27 988 149 113 32 chr4 12686796 12687017 -171601645 - L1PA15 LINE L1 -494 5671 5433 489 262 143 6 chr4 12691345 12691513 -171597149 - MER20 DNA MER1_type -7 212 22 571 301 108 34 chr4 12691848 12692441 -171596221 - ERVL LTR ERVL -1708 3946 3336 433 276 140 37 chr4 12692767 12693209 -171595453 - ERVL LTR ERVL -2577 2908 2409 189 0 0 0 chr4 12693257 12693278 -171595384 + (TA)n Simple_repeat Simple_repeat 1 21 0 491 285 108 24 chr4 12697878 12698166 -171590496 - LTR16A LTR ERVL -5 445 134 317 89 0 0 chr4 12699819 12699864 -171588798 - L1P4 LINE L1 -408 5760 5716 2491 148 81 53 chr4 12699878 12700383 -171588279 - LTR25 LTR ERV1 0 794 276 6384 77 45 4 chr4 12700383 12701404 -171587258 - L1PA7 LINE L1 -23 6131 5076 1379 157 86 8 chr4 12701404 12701638 -171587024 - LTR25 LTR ERV1 -506 288 29 213 39 0 0 chr4 12701638 12701664 -171586998 + (TTCCC)n Simple_repeat Simple_repeat 3 28 0 1379 157 86 8 chr4 12701664 12701696 -171586966 - LTR25 LTR ERV1 -765 29 1 226 171 0 0 chr4 12701698 12701733 -171586929 - L1P4 LINE L1 -463 5702 5668 972 229 366 6 chr4 12701734 12702084 -171586578 - MER66A LTR ERV1 0 478 3 947 194 107 0 chr4 12702085 12702301 -171586361 - L1P4 LINE L1 -494 5671 5433 354 235 168 7 chr4 12706059 12706208 -171582454 - MER20 DNA MER1_type -37 182 10 291 295 77 32 chr4 12710152 12710318 -171578344 - ERVL LTR ERVL -2236 3418 3265 221 0 35 0 chr4 12714616 12714645 -171574017 + (TA)n Simple_repeat Simple_repeat 2 31 0 289 335 51 23 chr4 12716182 12716358 -171572304 - LTR16A LTR ERVL -34 416 236 3819 94 69 19 chr4 12716698 12717677 -171570985 - MER11A LTR ERVK -4 1262 1 527 244 85 30 chr4 12720778 12720979 -171567683 - ERVL LTR ERVL -892 4638 4427 416 304 45 93 chr4 12720978 12721290 -171567372 - ERVL LTR ERVL -1240 4290 3994 * 385 286 76 8 chr4 12721295 12721414 -171567248 - ERVL LTR ERVL -1648 3882 3756 359 277 42 38 chr4 12721465 12721675 -171566987 - ERVL LTR ERVL -1338 3428 1490 633 260 108 50 chr4 12723391 12723733 -171564929 - MLT1A1 LTR MaLR -3 362 1 680 243 112 29 chr4 12724686 12724962 -171563700 - LTR16A LTR ERVL -51 399 101 583 353 78 20 chr4 12725853 12726643 -171562019 - ERVL LTR ERVL -1167 4597 3423 391 319 86 5 chr4 12726764 12726974 -171561688 - ERVL LTR ERVL -2211 3553 3327 536 317 91 5 chr4 12727121 12727342 -171561320 - LTR16A LTR ERVL -159 291 52 251 322 16 16 chr4 12731068 12731189 -171557473 - L2 LINE L2 -1216 2098 1978 1038 296 98 10 chr4 12731635 12732044 -171556618 + LTR16A LTR ERVL 1 445 -5 294 216 0 0 chr4 12732540 12732591 -171556071 + ERVL LTR ERVL 3406 3456 -2308 258 296 80 0 chr4 12732585 12732673 -171555989 - ERVL LTR ERVL -2350 3414 3320 * 374 307 83 21 chr4 12732767 12732959 -171555703 - ERVL LTR ERVL -2582 3182 2979 373 267 97 28 chr4 12733094 12733270 -171555392 - ERVL LTR ERVL -2957 2807 2620 423 112 209 45 chr4 12733583 12733717 -171554945 - L1MB1 LINE L1 0 6168 6013 817 214 128 95 chr4 12734800 12735137 -171553525 - MLT1A1 LTR MaLR -17 348 1 988 237 169 11 chr4 12735374 12735652 -171553010 - MLT2B2 LTR ERVL -2 513 192 2371 240 186 44 chr4 12736475 12737709 -171550953 - L1M4 LINE L1 -5120 1422 14 1621 141 101 26 chr4 12739311 12739816 -171548846 - MLT2A2 LTR ERVL 0 554 1 231 287 0 23 chr4 12741279 12741366 -171547296 - MLT1E2 LTR MaLR -537 89 5 242 283 40 50 chr4 12742029 12742128 -171546534 + MSTD LTR MaLR 204 301 -95 1605 199 99 67 chr4 12742645 12743392 -171545270 - MER4C LTR ERV1 0 667 34 340 209 0 47 chr4 12743699 12743785 -171544877 - MER4C LTR ERV1 -383 82 1 2942 124 44 0 chr4 12743931 12744365 -171544297 - MLT2A2 LTR ERVL 0 453 1 365 295 122 38 chr4 12745243 12745694 -171542968 - MLT1D LTR MaLR -10 495 7 2874 77 64 5 chr4 12746989 12747381 -171541281 - LTR8 LTR ERV1 -3 688 274 539 96 72 0 chr4 12747380 12747463 -171541199 - LTR8 LTR ERV1 -602 89 1 * 649 252 81 14 chr4 12747695 12747905 -171540757 - PABL_B LTR ERV1 0 667 444 225 301 69 94 chr4 12748173 12748376 -171540286 - PABL_B LTR ERV1 -469 198 1 1255 249 129 12 chr4 12748587 12749013 -171539649 - MER31A LTR ERV1 -9 476 1 1938 178 97 7 chr4 12749083 12749504 -171539158 - LOR1b LTR ERV1 0 461 3 6345 65 50 0 chr4 12750205 12751279 -171537383 - L1PA7 LINE L1 -1 6153 5042 225 88 0 0 chr4 12751279 12751313 -171537349 + L1PA7 LINE L1 4976 5009 -1137 503 96 106 39 chr4 12752307 12752411 -171536251 - L1P LINE L1 -945 5201 5091 1880 156 71 6 chr4 12755052 12755404 -171533258 - THE1C LTR MaLR 0 375 1 783 181 0 0 chr4 12767563 12767701 -171520961 + L1PA8 LINE L1 6011 6148 -24 598 244 62 12 chr4 12769029 12769189 -171519473 - MER31A LTR ERV1 -13 472 305 652 171 79 7 chr4 12769192 12769332 -171519330 - MER31A LTR ERV1 -335 150 1 2536 191 71 12 chr4 12777221 12777797 -171510865 - LTR38B LTR ERV1 0 610 1 1160 89 0 4 chr4 12781391 12781617 -171507045 - L1PA8 LINE L1 -1 6171 5869 5989 24 3 0 chr4 12789604 12790283 -171498379 - L1PA3 LINE L1 -4 6151 5471 1132 249 63 9 chr4 12791039 12791372 -171497290 - MER31A LTR ERV1 -134 351 1 186 128 0 0 chr4 12792496 12792535 -171496127 + (TA)n Simple_repeat Simple_repeat 1 39 0 373 222 128 128 chr4 12793721 12794127 -171494535 - MLT1D LTR MaLR -87 418 13 234 0 0 0 chr4 12794207 12794233 -171494429 + (TGGGGG)n Simple_repeat Simple_repeat 2 27 0 3329 101 13 0 chr4 12796200 12796654 -171492008 + LTR46 LTR ERV1 1 460 0 1201 189 231 37 chr4 12799901 12800329 -171488333 - MER9 LTR ERVK 0 511 1 23267 174 41 19 chr4 12800329 12805458 -171483204 - HERVK9 LTR ERVK 0 7316 1626 3091 183 40 36 chr4 12805454 12806353 -171482309 - HERVK9 LTR ERVK -5249 667 1 * 1706 204 69 35 chr4 12806353 12806844 -171481818 - MER9 LTR ERVK 0 511 4 2089 49 42 0 chr4 12811840 12812105 -171476557 + L1PA5 LINE L1 5879 6154 0 1486 197 141 5 chr4 12815373 12815749 -171472913 + MSTA LTR MaLR 1 427 -1 1778 187 114 3 chr4 12817101 12817486 -171471176 + MSTA LTR MaLR 1 428 0 1185 168 59 35 chr4 12819497 12819783 -171468879 - L1PB4 LINE L1 -5 6151 5859 417 276 104 8 chr4 12822197 12822331 -171466331 - MLT1D LTR MaLR -40 465 319 3278 158 50 10 chr4 12825196 12825811 -171462851 + MER51C LTR ERV1 1 640 0 988 176 10 10 chr4 12827259 12827452 -171461210 - AluSg/x SINE Alu 0 312 120 948 28 0 0 chr4 12827452 12827560 -171461102 - L1PA3 LINE L1 -3 6152 6045 1653 112 145 0 chr4 12827560 12827809 -171460853 - AluSx SINE Alu -27 285 1 534 242 113 38 chr4 12829380 12829566 -171459096 + MER2 DNA MER2_type 67 266 -79 7238 47 9 0 chr4 12834425 12835608 -171453054 - L1PA4 LINE L1 0 6155 4963 8335 27 9 1 chr4 12835608 12836594 -171452068 + L1PA4 LINE L1 3953 4946 -1200 593 287 61 72 chr4 12836594 12837051 -171451611 - MLT1D LTR MaLR -48 457 6 344 263 74 115 chr4 12839208 12839722 -171448940 - MLT1D LTR MaLR -8 497 5 241 338 28 21 chr4 12839734 12839879 -171448783 - LTR16C LTR ERVL -60 431 286 5709 90 42 1 chr4 12843289 12844099 -171444563 + L1PA8 LINE L1 5327 6169 -3 447 259 96 81 chr4 12850791 12851262 -171437400 - MLT1D LTR MaLR 0 505 28 229 303 49 42 chr4 12851293 12851435 -171437227 - LTR16C LTR ERVL -60 431 289 2236 84 48 0 chr4 12852089 12852399 -171436263 - L1PA7 LINE L1 0 6154 5830 1214 207 39 0 chr4 12855483 12855739 -171432923 + MER2 DNA MER2_type 2 267 -78 12914 121 73 11 chr4 12856056 12858309 -171430353 - L1PBa LINE L1 -3836 3026 571 422 271 118 14 chr4 12858315 12858459 -171430203 + MER50 LTR ERV1 10 168 -566 3060 130 20 130 chr4 12858595 12859255 -171429407 - LTR18B LTR ERVL -27 587 1 1026 228 128 9 chr4 12859255 12859573 -171429089 + MER50 LTR ERV1 293 649 -85 214 303 57 33 chr4 13059618 13059740 -171228922 + MIR SINE MIR 47 171 -91 22 35 0 0 chr4 13060000 13060029 -171228633 + AT_rich Low_complexity Low_complexity 1 29 0 184 253 36 60 chr4 13060140 13060223 -171228439 - MIR SINE MIR -77 185 105 1955 112 87 0 chr4 13061295 13061581 -171227081 - AluSq SINE Alu -2 311 1 373 284 103 9 chr4 13061663 13061779 -171226883 + L2 LINE L2 3138 3264 -8 1683 143 84 42 chr4 13062353 13062709 -171225953 - THE1C LTR MaLR -4 371 1 192 77 0 0 chr4 13062746 13062772 -171225890 + (T)n Simple_repeat Simple_repeat 1 26 0 893 333 67 12 chr4 13063946 13064363 -171224299 - HERV16 LTR ERVL -4219 777 338 779 355 35 10 chr4 13064489 13064883 -171223779 + HERV16 LTR ERVL 2541 2944 -2052 1514 268 53 46 chr4 13065375 13066492 -171222170 + L1MEc LINE L1 1559 2650 -3565 2159 110 0 3 chr4 13066614 13066913 -171221749 - AluY SINE Alu -13 298 1 831 233 65 4 chr4 13066914 13067146 -171221516 + L1M4 LINE L1 4531 4776 -1370 1459 79 5 0 chr4 13067271 13067461 -171221201 + AluY SINE Alu 115 305 -6 280 364 45 0 chr4 13067504 13067636 -171221026 - L2 LINE L2 -1 3271 3134 519 33 0 0 chr4 13067855 13067916 -171220746 - THE1C LTR MaLR -46 329 269 1948 281 74 42 chr4 13067918 13068947 -171219715 + L1MEc LINE L1 407 1468 -5139 392 340 65 56 chr4 13068949 13069287 -171219375 + L1MEc LINE L1 1285 1625 -4803 22 0 0 0 chr4 13069287 13069309 -171219353 + AT_rich Low_complexity Low_complexity 1 22 0 3068 160 13 0 chr4 13070139 13070676 -171217986 + L1PA16 LINE L1 5622 6165 -1 22 0 0 0 chr4 13070676 13070698 -171217964 + AT_rich Low_complexity Low_complexity 1 22 0 266 227 121 0 chr4 13070704 13070770 -171217892 - LTR16B LTR ERVL -390 74 1 2184 101 10 10 chr4 13070808 13071116 -171217546 + AluY SINE Alu 1 308 -3 403 333 115 26 chr4 13071118 13071352 -171217310 - LTR16C LTR ERVL -157 334 80 429 337 29 12 chr4 13072017 13072189 -171216473 - MIR3 SINE MIR -4 204 30 345 288 72 40 chr4 13072297 13072422 -171216240 + MIR SINE MIR 15 143 -119 182 250 23 0 chr4 13072520 13072564 -171216098 + MIR SINE MIR 205 249 -13 335 252 200 0 chr4 13072582 13072697 -171215965 - MIR SINE MIR -78 184 47 3995 79 2 9 chr4 13072759 13073304 -171215358 - L1PA10 LINE L1 -6 6162 5622 306 246 132 0 chr4 13073609 13073723 -171214939 + L1MEc LINE L1 1935 2063 -4363 21 57 0 0 chr4 13073813 13073848 -171214814 + AT_rich Low_complexity Low_complexity 1 35 0 393 267 32 43 chr4 13074288 13074475 -171214187 - L1ME LINE L1 -363 5758 5574 501 289 166 5 chr4 13076217 13076428 -171212234 + L2 LINE L2 2658 2902 -412 971 234 67 60 chr4 13076428 13076710 -171211952 + MLT2B3 LTR ERVL 270 553 -1 190 252 79 94 chr4 13077240 13077290 -171211372 - MIR SINE MIR -21 241 192 869 262 18 22 chr4 13077290 13077515 -171211147 - MER58A DNA MER1_type 0 224 1 190 252 79 94 chr4 13077515 13077591 -171211071 - MIR SINE MIR -70 192 117 1131 206 73 15 chr4 13079170 13079442 -171209220 + MLT1A2 LTR MaLR 71 358 -16 330 291 21 29 chr4 13079460 13079759 -171208903 - Charlie7 DNA MER1_type -1992 620 270 301 263 61 35 chr4 13079985 13080099 -171208563 - L1MCa LINE L1 -5101 1325 1209 240 196 36 27 chr4 13080148 13080260 -171208402 + (TA)n Simple_repeat Simple_repeat 2 114 0 47 61 0 0 chr4 13080263 13080345 -171208317 + AT_rich Low_complexity Low_complexity 1 82 0 272 265 29 0 chr4 13080454 13080556 -171208106 - L1MCa LINE L1 -5223 1384 1280 203 196 22 54 chr4 13080938 13081030 -171207632 + (TAAA)n Simple_repeat Simple_repeat 2 90 0 383 276 96 34 chr4 13081233 13081472 -171207190 + L1ME4a LINE L1 5644 5897 -224 311 345 25 8 chr4 13081632 13081751 -171206911 - MIR SINE MIR -110 152 32 352 122 0 0 chr4 13081904 13081953 -171206709 + MLT1A2 LTR MaLR 1 49 -325 7485 208 28 48 chr4 13083870 13086098 -171202564 + L1PA10 LINE L1 8 2190 -4271 1724 162 39 33 chr4 13086103 13086437 -171202225 + THE1B LTR MaLR 1 336 -28 293 35 0 0 chr4 13086442 13086487 -171202175 - L1PA3 LINE L1 -3 6152 6108 20145 140 14 8 chr4 13086512 13090796 -171197866 + L1PA10 LINE L1 2191 6483 0 222 198 0 66 chr4 13090870 13090961 -171197701 + (TA)n Simple_repeat Simple_repeat 1 85 0 210 156 0 0 chr4 13090986 13091031 -171197631 + (CA)n Simple_repeat Simple_repeat 2 46 0 1267 231 144 32 chr4 13091036 13091382 -171197280 - MLT2B1 LTR ERVL -69 451 67 2298 137 28 17 chr4 13091392 13091750 -171196912 - THE1B LTR MaLR 0 364 3 2187 129 42 28 chr4 13091938 13092102 -171196560 - THE1B LTR MaLR -2 362 202 207 0 0 0 chr4 13092102 13092125 -171196537 + (GA)n Simple_repeat Simple_repeat 2 24 0 2187 129 42 28 chr4 13092125 13092317 -171196345 - THE1B LTR MaLR -162 202 1 732 290 100 48 chr4 13092332 13092773 -171195889 + LTR16B LTR ERVL 1 464 0 280 288 85 79 chr4 13092773 13092950 -171195712 - MIR SINE MIR -77 185 8 345 313 9 17 chr4 13092996 13093111 -171195551 + L1MEd LINE L1 948 1061 -5058 2262 97 0 3 chr4 13093205 13093504 -171195158 - AluY SINE Alu -13 298 1 670 221 39 25 chr4 13094281 13094485 -171194177 - L1MB8 LINE L1 -1 6177 5971 198 171 0 0 chr4 13094941 13094982 -171193680 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1020 218 14 9 chr4 13095575 13095791 -171192871 + MER20 DNA MER1_type 2 218 -1 1024 258 72 39 chr4 13095851 13096212 -171192450 + MLT1F LTR MaLR 170 542 0 452 304 88 44 chr4 13097923 13098219 -171190443 + MLT1I LTR MaLR 82 390 -19 180 0 0 0 chr4 13098333 13098353 -171190309 + (CA)n Simple_repeat Simple_repeat 1 20 0 3573 204 20 34 chr4 13099088 13099225 -171189437 - L1MB7 LINE L1 -28 6156 6019 2077 134 3 3 chr4 13099225 13099530 -171189132 + AluSx SINE Alu 1 305 -7 3573 204 20 34 chr4 13099530 13100271 -171188391 - L1MB7 LINE L1 -165 6019 5290 571 195 32 8 chr4 13100281 13100404 -171188258 - L1MC1 LINE L1 0 6333 6208 249 159 0 0 chr4 13101409 13101453 -171187209 + CT-rich Low_complexity Low_complexity 2 45 0 21 0 0 0 chr4 13101612 13101633 -171187029 + AT_rich Low_complexity Low_complexity 1 21 0 2167 107 17 0 chr4 13101835 13102135 -171186527 - AluSc SINE Alu -4 305 1 1331 306 8 3 chr4 13102354 13102739 -171185923 - MER69 DNA AcHobo -783 443 57 439 304 15 15 chr4 13103711 13103846 -171184816 + MIR SINE MIR 17 151 -111 1366 248 34 6 chr4 13103881 13104236 -171184426 + MLT1A1 LTR MaLR 1 365 0 182 286 0 0 chr4 13104247 13104296 -171184366 + MIR SINE MIR 166 214 -48 210 171 0 0 chr4 13104323 13104364 -171184298 + (CATA)n Simple_repeat Simple_repeat 3 43 0 482 277 79 39 chr4 13105220 13105508 -171183154 - MLT1H LTR MaLR -120 289 23 188 229 83 0 chr4 13105673 13105721 -171182941 + L2 LINE L2 3261 3312 -1 24 0 0 0 chr4 13106251 13106275 -171182387 + AT_rich Low_complexity Low_complexity 1 24 0 226 133 0 0 chr4 13106665 13106695 -171181967 + Tigger3(Golem) DNA MER2_type 2997 3026 -3 2278 118 9 3 chr4 13107698 13108033 -171180629 + THE1C LTR MaLR 1 360 -36 292 385 42 53 chr4 13108237 13108438 -171180224 - L2 LINE L2 -251 3062 2863 2087 175 44 7 chr4 13108438 13108849 -171179813 - MSTB LTR MaLR 0 426 1 292 385 42 53 chr4 13108849 13108909 -171179753 - L2 LINE L2 -450 2863 2804 193 395 37 9 chr4 13109284 13109393 -171179269 - L2 LINE L2 -5 3267 3156 372 220 11 11 chr4 13112734 13112825 -171175837 - MLT1C LTR MaLR -337 130 40 241 370 22 0 chr4 13113019 13113111 -171175551 - L2 LINE L2 -6 3266 3173 1641 234 84 25 chr4 13113435 13113910 -171174752 - MLT1D LTR MaLR 0 505 3 21 100 0 0 chr4 13114297 13114367 -171174295 + AT_rich Low_complexity Low_complexity 1 70 0 215 197 33 0 chr4 13114442 13114503 -171174159 + (TA)n Simple_repeat Simple_repeat 2 64 0 337 307 34 58 chr4 13114646 13114851 -171173811 - MIR SINE MIR -50 212 13 10042 30 1 0 chr4 13115289 13117261 -171171401 - L1PA3 LINE L1 0 6155 4182 23 0 0 0 chr4 13117868 13117891 -171170771 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr4 13118190 13118215 -171170447 + AT_rich Low_complexity Low_complexity 1 25 0 811 270 81 46 chr4 13118354 13118699 -171169963 + MLT1I LTR MaLR 13 369 -40 280 155 0 86 chr4 13118873 13118931 -171169731 + AluJo SINE Alu 3 55 -247 2004 185 9 0 chr4 13118931 13119261 -171169401 - MER61A LTR ERV1 0 343 11 925 201 12 85 chr4 13119275 13119365 -171169297 + AluJo SINE Alu 56 151 -161 2136 106 10 3 chr4 13119365 13119658 -171169004 + AluSq SINE Alu 1 295 -18 925 201 12 85 chr4 13119658 13119826 -171168836 + AluJo SINE Alu 151 295 -17 1819 134 52 71 chr4 13120329 13120710 -171167952 - THE1C LTR MaLR 0 375 2 380 274 143 34 chr4 13121087 13121262 -171167400 - MIR SINE MIR -21 241 48 242 222 0 25 chr4 13121467 13121548 -171167114 + (CATATA)n Simple_repeat Simple_repeat 6 84 0 709 149 16 32 chr4 13121574 13121875 -171166787 + (TA)n Simple_repeat Simple_repeat 1 296 0 543 160 22 28 chr4 13121916 13122097 -171166565 + (TA)n Simple_repeat Simple_repeat 1 180 0 292 335 112 29 chr4 13122194 13122436 -171166226 - MLT1I LTR MaLR -49 360 99 239 336 36 7 chr4 13123076 13123216 -171165446 - L3b LINE CR1 -323 1260 1117 1442 209 59 0 chr4 13123677 13124112 -171164550 - MLT2B1 LTR ERVL -2 513 2 520 328 68 28 chr4 13124206 13124456 -171164206 + MIR SINE MIR 2 261 -1 28 0 0 0 chr4 13124520 13124548 -171164114 + AT_rich Low_complexity Low_complexity 1 28 0 2356 145 3 6 chr4 13124568 13124933 -171163729 - THE1B LTR MaLR 0 364 1 903 206 225 39 chr4 13125123 13125483 -171163179 + MSTC LTR MaLR 1 427 -1 232 224 30 0 chr4 13126990 13127057 -171161605 - MER116 DNA Mariner -11 69 1 24 0 0 0 chr4 13127601 13127625 -171161037 + AT_rich Low_complexity Low_complexity 1 24 0 1262 244 50 17 chr4 13128006 13128602 -171160060 + L1ME1 LINE L1 4865 5483 -683 1152 246 41 60 chr4 13128607 13129094 -171159568 + L1ME1 LINE L1 5683 6160 -6 437 288 151 58 chr4 13129659 13129999 -171158663 + L1ME LINE L1 5347 5727 -394 1989 117 28 3 chr4 13129999 13130289 -171158373 - AluSq SINE Alu -16 297 1 437 288 151 58 chr4 13130289 13130326 -171158336 + L1ME LINE L1 5727 5759 -362 210 286 71 0 chr4 13132029 13132113 -171156549 + MIR SINE MIR 74 163 -99 633 249 108 90 chr4 13132726 13133368 -171155294 - HAL1 LINE L1 0 2507 1855 3311 129 6 9 chr4 13133421 13133949 -171154713 - L1PA13 LINE L1 -2 6812 6287 18221 204 17 12 chr4 13133952 13138461 -171150201 - L1PA13 LINE L1 -858 5939 1396 4620 261 107 3 chr4 13138464 13139604 -171149058 - L1PA13 LINE L1 -5529 1258 1 308 244 0 51 chr4 13139607 13139685 -171148977 - HAL1 LINE L1 -710 1797 1724 2208 217 24 89 chr4 13139686 13140271 -171148391 + MLT2B3 LTR ERVL 8 554 0 357 333 22 14 chr4 13140872 13141010 -171147652 + MIR SINE MIR 77 215 -47 471 261 15 15 chr4 13141903 13142037 -171146625 + L2 LINE L2 2326 2459 -855 2083 120 65 29 chr4 13142037 13142388 -171146274 + THE1B LTR MaLR 1 364 0 232 224 41 0 chr4 13142411 13142460 -171146202 - AluJ/monomer SINE Alu -12 289 239 350 276 92 11 chr4 13142760 13142945 -171145717 - L1ME4a LINE L1 -214 5907 5708 331 279 69 20 chr4 13144909 13145113 -171143549 + L1ME4a LINE L1 5678 5891 -230 449 271 71 29 chr4 13145195 13145365 -171143297 - MER5A DNA MER1_type -6 183 7 239 261 37 15 chr4 13145385 13145519 -171143143 + (TA)n Simple_repeat Simple_repeat 2 138 0 315 352 56 12 chr4 13146203 13146365 -171142297 + MIR3 SINE MIR 4 172 -36 269 308 39 0 chr4 13147242 13147320 -171141342 + MIR SINE MIR 34 114 -148 26 30 0 0 chr4 13147705 13147738 -171140924 + AT_rich Low_complexity Low_complexity 1 33 0 333 198 0 0 chr4 13147841 13147922 -171140740 + (TA)n Simple_repeat Simple_repeat 2 82 0 210 332 32 63 chr4 13148011 13148201 -171140461 - L3 LINE CR1 -263 1314 1131 892 219 63 0 chr4 13148490 13148695 -171139967 - MER58A DNA MER1_type -1 223 6 878 201 7 0 chr4 13148767 13148916 -171139746 - FRAM SINE Alu -16 150 1 315 122 0 0 chr4 13148978 13149027 -171139635 + (TC)n Simple_repeat Simple_repeat 1 49 0 1414 213 75 24 chr4 13149355 13149731 -171138931 - LTR52 LTR ERVL -19 402 8 22 0 0 0 chr4 13150493 13150515 -171138147 + AT_rich Low_complexity Low_complexity 1 22 0 273 339 65 48 chr4 13151533 13151719 -171136943 - MIR3 SINE MIR -6 202 14 22 35 0 0 chr4 13151851 13151880 -171136782 + AT_rich Low_complexity Low_complexity 1 29 0 611 316 68 12 chr4 13153623 13154036 -171134626 + MLT1H LTR MaLR 84 549 0 2105 172 53 7 chr4 13154117 13154530 -171134132 - MSTB1 LTR MaLR 0 432 1 196 396 34 22 chr4 13155304 13155518 -171133144 - L2 LINE L2 -261 3011 2797 210 361 19 28 chr4 13156403 13156511 -171132151 - MIR3 SINE MIR -96 112 6 836 234 83 19 chr4 13156590 13156795 -171131867 - MER20 DNA MER1_type -1 218 1 1818 158 13 3 chr4 13156796 13157094 -171131568 + AluJo SINE Alu 1 301 -11 278 359 77 24 chr4 13158018 13158188 -171130474 - MIR SINE MIR -71 191 13 296 323 105 15 chr4 13159602 13159735 -171128927 + MIR3 SINE MIR 19 163 -45 268 411 43 12 chr4 13160713 13160876 -171127786 - MIR SINE MIR -75 187 20 980 208 23 37 chr4 13161131 13161347 -171127315 + MER20 DNA MER1_type 7 219 0 429 317 32 37 chr4 13161362 13161608 -171127054 + L1M4 LINE L1 4352 4596 -1550 1112 291 112 58 chr4 13161676 13162471 -171126191 - L2 LINE L2 -473 2841 2004 22 0 0 0 chr4 13162529 13162551 -171126111 + AT_rich Low_complexity Low_complexity 1 22 0 26 64 0 0 chr4 13162804 13162851 -171125811 + AT_rich Low_complexity Low_complexity 1 47 0 783 209 147 0 chr4 13163943 13164106 -171124556 + MER5A DNA MER1_type 3 189 0 799 235 76 46 chr4 13165894 13166132 -171122530 - MIR SINE MIR 0 262 18 235 156 22 0 chr4 13166143 13166188 -171122474 + MIR SINE MIR 128 173 -89 309 242 111 10 chr4 13166782 13166881 -171121781 - MIR SINE MIR -32 230 122 1419 142 7 37 chr4 13168084 13168517 -171120145 + pTR5 LTR ERV1 742 1210 -1228 219 317 135 48 chr4 13169959 13170167 -171118495 + L2 LINE L2 2633 2858 -456 4311 89 26 0 chr4 13170361 13170966 -171117696 + L1PA10 LINE L1 5546 6166 -2 510 293 30 23 chr4 13171170 13171303 -171117359 + L2 LINE L2 3139 3272 0 498 318 24 61 chr4 13171571 13171901 -171116761 + MLT1K LTR MaLR 254 571 -17 197 286 0 0 chr4 13171975 13172017 -171116645 + L2 LINE L2 3227 3268 -4 201 296 165 17 chr4 13172443 13172558 -171116104 + MIR SINE MIR 125 256 -6 1049 136 6 0 chr4 13172862 13173039 -171115623 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 254 37 111 0 chr4 13173039 13173093 -171115569 + CT-rich Low_complexity Low_complexity 2 61 0 4126 85 9 7 chr4 13173226 13173779 -171114883 - MER41A LTR ERV1 0 554 1 191 244 267 0 chr4 13174588 13174674 -171113988 - L2 LINE L2 -2 3311 3203 235 356 62 23 chr4 13175091 13175268 -171113394 + LTR16A LTR ERVL 7 190 -260 413 255 31 67 chr4 13175380 13175463 -171113199 + HERV16 LTR ERVL 3410 3494 -1502 2652 147 14 2 chr4 13175463 13175701 -171112961 - MSTA LTR MaLR 0 428 181 2259 104 0 7 chr4 13175701 13175999 -171112663 - AluSx SINE Alu -5 307 12 2652 147 14 2 chr4 13175999 13176183 -171112479 - MSTA LTR MaLR -247 181 1 413 255 31 67 chr4 13176183 13176354 -171112308 + HERV16 LTR ERVL 3494 3655 -1341 372 312 21 0 chr4 13177699 13177840 -171110822 + HERV16 LTR ERVL 4685 4828 -657 323 284 99 25 chr4 13179473 13179635 -171109027 - LTR16C LTR ERVL -26 465 292 1668 107 0 75 chr4 13180297 13180605 -171108057 - L1P4 LINE L1 -532 5634 5350 918 148 6 0 chr4 13180614 13180776 -171107886 - L1MA2 LINE L1 -1 6303 6141 3068 193 4 35 chr4 13180776 13181010 -171107652 - L1P4 LINE L1 -879 5267 5027 2376 117 0 0 chr4 13181010 13181319 -171107343 - AluSg SINE Alu -1 309 1 3068 193 4 35 chr4 13181319 13181826 -171106836 - L1P4 LINE L1 -1119 5027 4549 2376 87 3 37 chr4 13181844 13182166 -171106496 - AluY SINE Alu 0 311 1 708 256 113 39 chr4 13182179 13182543 -171106119 + LTR16B LTR ERVL 74 464 0 426 221 66 0 chr4 13182543 13182663 -171105999 + LTR16C LTR ERVL 362 489 -2 186 43 0 0 chr4 13182714 13182737 -171105925 + (CA)n Simple_repeat Simple_repeat 2 24 0 1789 153 145 16 chr4 13183770 13184149 -171104513 - MSTA LTR MaLR 0 428 1 564 244 72 81 chr4 13185568 13185789 -171102873 + MER20 DNA MER1_type 1 219 0 203 281 250 6 chr4 13185885 13186049 -171102613 - MIR SINE MIR -19 243 40 337 316 103 22 chr4 13186797 13186933 -171101729 + L2 LINE L2 3121 3267 -5 333 323 85 18 chr4 13187660 13187824 -171100838 + L2 LINE L2 3095 3269 -3 183 129 0 0 chr4 13187832 13187863 -171100799 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 196 225 0 0 chr4 13187964 13188004 -171100658 + L2 LINE L2 3217 3256 -16 21 0 0 0 chr4 13188096 13188117 -171100545 + AT_rich Low_complexity Low_complexity 1 21 0 335 300 59 35 chr4 13188491 13188661 -171100001 - MIR SINE MIR -6 256 83 455 268 80 0 chr4 13188713 13188851 -171099811 - MER63 DNA MER1_type -61 775 1 402 285 51 7 chr4 13189357 13189494 -171099168 - L2 LINE L2 0 3313 3171 * 707 258 56 28 chr4 13189490 13189742 -171098920 + MIR SINE MIR 5 262 0 287 357 72 11 chr4 13189806 13190083 -171098579 - L2 LINE L2 -223 3090 2792 519 60 0 0 chr4 13190122 13190189 -171098473 + (TTCC)n Simple_repeat Simple_repeat 4 70 0 262 274 57 89 chr4 13191253 13191310 -171097352 - MIR SINE MIR -74 188 131 3899 96 3 12 chr4 13191310 13191334 -171097328 - L1PA13 LINE L1 -11 6152 6129 1849 132 36 93 chr4 13191334 13191720 -171096942 - THE1B LTR MaLR 0 364 1 3899 96 3 12 chr4 13191720 13192260 -171096402 - L1PA13 LINE L1 -34 6129 5593 262 274 57 89 chr4 13192260 13192359 -171096303 - MIR SINE MIR -131 131 37 21 0 0 0 chr4 13192579 13192600 -171096062 + AT_rich Low_complexity Low_complexity 1 21 0 208 282 121 24 chr4 13192744 13192868 -171095794 + MIR SINE MIR 114 249 -13 991 178 0 12 chr4 13192936 13193099 -171095563 - FRAM SINE Alu -18 158 1 334 287 132 8 chr4 13195118 13195247 -171093415 - L2 LINE L2 -616 2698 2554 195 243 100 29 chr4 13196110 13196180 -171092482 - MIR SINE MIR -99 109 35 378 0 0 0 chr4 13196354 13196396 -171092266 + (TA)n Simple_repeat Simple_repeat 2 43 0 1419 194 88 12 chr4 13197064 13197220 -171091442 - THE1C LTR MaLR -8 367 224 234 0 0 0 chr4 13197220 13197246 -171091416 + (GA)n Simple_repeat Simple_repeat 1 26 0 1419 194 88 12 chr4 13197246 13197430 -171091232 - THE1C LTR MaLR -151 224 1 9328 135 22 33 chr4 13197430 13199025 -171089637 - THE1C-int LTR MaLR 0 1580 4 1492 191 55 33 chr4 13199028 13199395 -171089267 - THE1C LTR MaLR 0 375 1 4824 220 26 7 chr4 13200104 13201670 -171086992 + L1MC1 LINE L1 4724 6315 -18 317 297 36 9 chr4 13201685 13201796 -171086866 - L1M4 LINE L1 -2115 4031 3918 3643 30 17 0 chr4 13201796 13202258 -171086404 + L1PA2 LINE L1 3841 4310 -1836 7807 24 0 0 chr4 13202358 13204044 -171084618 + L1PA2 LINE L1 4470 6155 0 253 231 82 30 chr4 13204060 13204194 -171084468 - L1M4 LINE L1 -2216 3930 3790 204 135 0 0 chr4 13204805 13204842 -171083820 + (T)n Simple_repeat Simple_repeat 1 37 0 380 354 59 14 chr4 13204936 13205425 -171083237 + L1ME LINE L1 5313 5823 -339 237 254 32 16 chr4 13206751 13206814 -171081848 - MIR SINE MIR -100 162 99 218 292 0 31 chr4 13206901 13206966 -171081696 - MIR SINE MIR -180 82 20 1859 167 21 42 chr4 13207063 13207256 -171081406 - THE1C LTR MaLR 0 375 192 1904 122 42 0 chr4 13207256 13207542 -171081120 + AluSg SINE Alu 1 298 -12 1859 167 21 42 chr4 13207542 13207731 -171080931 - THE1C LTR MaLR -183 192 1 891 259 62 0 chr4 13208229 13208472 -171080190 + MIR SINE MIR 5 262 0 2410 122 8 36 chr4 13208517 13208903 -171079759 + THE1C LTR MaLR 1 375 0 9796 132 29 10 chr4 13208903 13210454 -171078208 + THE1C-int LTR MaLR 1 1580 0 2400 138 11 0 chr4 13210454 13210825 -171077837 + THE1C LTR MaLR 1 375 0 337 235 34 0 chr4 13211443 13211562 -171077100 + CT-rich Low_complexity Low_complexity 3 125 0 28 0 0 0 chr4 13212137 13212165 -171076497 + AT_rich Low_complexity Low_complexity 1 28 0 1035 245 23 89 chr4 13212804 13213286 -171075376 - LTR40a LTR ERVL -65 454 5 692 284 41 9 chr4 13213312 13213530 -171075132 + MIR SINE MIR 35 259 -3 26 64 0 0 chr4 13213534 13213581 -171075081 + AT_rich Low_complexity Low_complexity 1 47 0 651 241 7 0 chr4 13214737 13214874 -171073788 + Tigger3(Golem) DNA MER2_type 4 141 -2888 * 1308 183 28 0 chr4 13214872 13215123 -171073539 + Tigger3(Golem) DNA MER2_type 2771 3028 -1 378 0 0 0 chr4 13215553 13215595 -171073067 + (CA)n Simple_repeat Simple_repeat 2 43 0 439 116 85 21 chr4 13267665 13268150 -171020512 + (CATAT)n Simple_repeat Simple_repeat 1 516 0 416 63 21 95 chr4 13268119 13268309 -171020353 + (TA)n Simple_repeat Simple_repeat 2 177 0 * 347 51 15 113 chr4 13268326 13268521 -171020141 + (TA)n Simple_repeat Simple_repeat 2 177 0 372 167 70 19 chr4 13268527 13268733 -171019929 + (CATAT)n Simple_repeat Simple_repeat 1 216 0 1002 177 94 0 chr4 13269255 13269509 -171019153 - L1MA8 LINE L1 -1 6290 6013 291 331 73 8 chr4 13270174 13270298 -171018364 + MIR3 SINE MIR 45 176 -32 185 196 22 0 chr4 13270707 13270753 -171017909 + GA-rich Low_complexity Low_complexity 2 48 0 390 244 0 0 chr4 13271189 13271279 -171017383 + FLAM_A SINE Alu 44 133 0 304 412 10 20 chr4 13271352 13271556 -171017106 - L2 LINE L2 -260 3053 2852 760 178 8 0 chr4 13272370 13272499 -171016163 + MLT1D LTR MaLR 1 130 -375 455 298 18 9 chr4 13274505 13274619 -171014043 + L2 LINE L2 3182 3296 -17 233 320 48 40 chr4 13274728 13274853 -171013809 + MIR SINE MIR 16 141 -67 383 113 28 28 chr4 13274881 13274952 -171013710 + AluSc SINE Alu 224 294 -5 298 323 0 46 chr4 13274996 13275126 -171013536 + MIR SINE MIR 89 212 -50 253 387 54 0 chr4 13275318 13275429 -171013233 + L2 LINE L2 3152 3268 -4 25 18 0 73 chr4 13275467 13275522 -171013140 + AT_rich Low_complexity Low_complexity 1 51 0 1750 166 27 6 chr4 13276416 13276748 -171011914 - L1MA2 LINE L1 0 6304 5966 283 286 50 8 chr4 13277321 13277440 -171011222 + LTR67 LTR ERVL 428 551 -6 1104 158 11 16 chr4 13277588 13277778 -171010884 - AluJb SINE Alu -12 300 112 223 360 13 0 chr4 13278292 13278367 -171010295 - L2 LINE L2 -13 3259 3184 369 0 0 0 chr4 13278845 13278886 -171009776 + (TG)n Simple_repeat Simple_repeat 2 42 0 476 290 88 42 chr4 13279050 13279267 -171009395 - MIR SINE MIR -14 248 22 199 310 109 52 chr4 13282348 13282522 -171006140 - L3 LINE CR1 -40 1537 1354 21 0 0 0 chr4 13282630 13282651 -171006011 + AT_rich Low_complexity Low_complexity 1 21 0 300 111 0 0 chr4 13282651 13282696 -171005966 + (CA)n Simple_repeat Simple_repeat 2 46 0 2154 98 11 3 chr4 13282702 13282987 -171005675 - AluSq SINE Alu -26 287 1 1088 229 54 37 chr4 13285327 13285601 -171003061 - AluJo SINE Alu -8 304 23 2214 138 28 6 chr4 13285601 13285957 -171002705 - THE1B LTR MaLR 0 364 1 1088 229 54 37 chr4 13285957 13285979 -171002683 - AluJo SINE Alu -289 23 3 339 302 127 38 chr4 13285986 13286198 -171002464 - MIR SINE MIR -11 251 21 457 340 31 5 chr4 13286293 13286484 -171002178 + MIR SINE MIR 6 201 -61 919 128 47 14 chr4 13286610 13286758 -171001904 - FRAM SINE Alu -12 164 12 187 342 155 19 chr4 13287012 13287167 -171001495 + MIR SINE MIR 1 176 -86 181 336 115 0 chr4 13287163 13287267 -171001395 - MIR SINE MIR -105 157 42 * 1674 180 66 6 chr4 13287317 13287683 -171000979 - L1MB4 LINE L1 -6 6174 5787 207 0 0 0 chr4 13288054 13288077 -171000585 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1751 169 36 0 chr4 13288079 13288357 -171000305 - AluJb SINE Alu -23 289 2 228 330 20 20 chr4 13288380 13288480 -171000182 + MIR3 SINE MIR 92 191 -17 222 301 158 60 chr4 13288710 13288893 -170999769 - MIR SINE MIR -50 212 12 194 268 18 18 chr4 13289117 13289173 -170999489 - L2 LINE L2 -93 3220 3165 334 295 101 53 chr4 13290802 13291009 -170997653 - MIR SINE MIR 0 262 46 294 295 42 0 chr4 13291500 13291595 -170997067 - MER67C LTR ERV1 -367 343 245 297 331 58 16 chr4 13291637 13291758 -170996904 + MIR SINE MIR 91 216 -46 198 351 53 30 chr4 13292459 13292590 -170996072 + MER5A DNA MER1_type 55 188 -1 43615 42 3 1 chr4 13292689 13298833 -170989829 + L1PA3 LINE L1 2 6155 0 281 315 25 26 chr4 13299609 13299836 -170988826 - MER67A LTR ERV1 0 543 282 * 1138 275 81 16 chr4 13299817 13300306 -170988356 - MER67B LTR ERV1 -269 392 1 322 308 55 20 chr4 13300531 13300677 -170987985 - MIR SINE MIR -56 206 56 504 255 0 50 chr4 13301696 13301837 -170986825 - MER5A DNA MER1_type -55 134 1 369 279 228 0 chr4 13301866 13302002 -170986660 + MER5A DNA MER1_type 22 188 -1 306 295 35 4 chr4 13303871 13303993 -170984669 + MER5A DNA MER1_type 14 128 -50 5000 150 21 9 chr4 13304169 13305084 -170983578 + L1PA15 LINE L1 5235 6164 -1 230 386 70 0 chr4 13305130 13305288 -170983374 + MIR SINE MIR 30 198 -64 400 370 117 9 chr4 13305409 13305798 -170982864 + L2 LINE L2 2716 3149 -164 263 222 42 0 chr4 13305798 13305870 -170982792 - LTR33A LTR ERVL -2 521 447 406 266 65 65 chr4 13306182 13306321 -170982341 + L2 LINE L2 3175 3313 0 312 313 38 30 chr4 13306525 13306656 -170982006 + MIR3 SINE MIR 23 154 -54 225 276 0 58 chr4 13306718 13306805 -170981857 - L2 LINE L2 0 3272 3191 237 65 0 0 chr4 13307162 13307193 -170981469 + (TG)n Simple_repeat Simple_repeat 2 32 0 594 320 35 27 chr4 13307195 13307451 -170981211 + MIR SINE MIR 5 262 0 492 297 19 7 chr4 13307838 13307993 -170980669 - MIR3 SINE MIR -29 179 23 270 193 0 0 chr4 13308505 13308562 -170980100 + (TG)n Simple_repeat Simple_repeat 2 58 0 1110 185 0 0 chr4 13308902 13309080 -170979582 - AluJb SINE Alu 0 312 135 1840 272 87 10 chr4 13309172 13309767 -170978895 - L1ME1 LINE L1 -27 6139 5499 1121 259 34 37 chr4 13309769 13310090 -170978572 - MLT1A1 LTR MaLR -38 327 8 695 239 157 28 chr4 13310181 13310570 -170978092 - L1ME1 LINE L1 -745 5401 4963 414 115 63 35 chr4 13310633 13310807 -170977855 + (CATAT)n Simple_repeat Simple_repeat 2 180 0 324 132 79 40 chr4 13310978 13311130 -170977532 + (CATAT)n Simple_repeat Simple_repeat 3 160 0 381 59 21 106 chr4 13311135 13311483 -170977179 + (TA)n Simple_repeat Simple_repeat 1 318 0 317 271 156 8 chr4 13311497 13311535 -170977127 - L1ME1 LINE L1 -1941 4205 4174 180 0 0 0 chr4 13311535 13311555 -170977107 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 317 271 156 8 chr4 13311555 13311638 -170977024 - L1ME1 LINE L1 -1972 4174 4066 991 287 77 58 chr4 13311669 13311712 -170976950 - L1ME1 LINE L1 -3139 3007 2966 432 82 0 0 chr4 13311712 13311773 -170976889 + (TA)n Simple_repeat Simple_repeat 1 61 0 991 287 77 58 chr4 13311773 13312427 -170976235 - L1ME1 LINE L1 -3180 2966 2287 1518 213 19 19 chr4 13312427 13312789 -170975873 + MLT1A1 LTR MaLR 1 362 -3 991 287 77 58 chr4 13312789 13312971 -170975691 - L1ME1 LINE L1 -3859 2287 2110 13016 260 25 12 chr4 13312982 13313561 -170975101 - L1PA12 LINE L1 -759 6825 6255 300 27 0 0 chr4 13313561 13313598 -170975064 + (TG)n Simple_repeat Simple_repeat 2 38 0 13016 260 25 12 chr4 13313598 13316989 -170971673 - L1PA12 LINE L1 -1329 6255 2800 615 307 0 0 chr4 13316984 13317121 -170971541 - L1PA12 LINE L1 -5967 1617 1481 * 2845 16 0 0 chr4 13317136 13317452 -170971210 + AluYb8 SINE Alu 1 316 -2 1027 194 5 5 chr4 13317480 13317697 -170970965 - MLT1-int LTR MaLR -1172 199 1 * 5688 204 31 2 chr4 13317697 13318721 -170969941 - L1PA15-16 LINE L1 -5776 1073 20 1592 220 0 72 chr4 13318931 13319331 -170969331 + MLT1B LTR MaLR 15 385 -5 1290 202 16 18 chr4 13319336 13319924 -170968738 + MLT1B-int LTR MaLR 1 883 -488 405 214 67 17 chr4 13320044 13320166 -170968496 + MLT1A2 LTR MaLR 245 465 -2 918 270 77 34 chr4 13320171 13320615 -170968047 + MLT1C LTR MaLR 5 467 0 24 0 0 0 chr4 13321141 13321165 -170967497 + AT_rich Low_complexity Low_complexity 1 24 0 276 357 100 7 chr4 13321368 13321525 -170967137 + L2 LINE L2 2652 2793 -521 198 0 0 0 chr4 13321525 13321547 -170967115 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 276 357 100 7 chr4 13321547 13321680 -170966982 + L2 LINE L2 2793 2969 -345 4836 73 19 0 chr4 13321871 13322491 -170966171 + PABL_A LTR ERV1 26 657 -3 323 254 45 36 chr4 13322644 13322754 -170965908 + MLT1H1 LTR MaLR 441 551 -4 342 257 40 10 chr4 13322763 13322864 -170965798 - LTR67 LTR ERVL -43 514 411 452 305 13 13 chr4 13323605 13323756 -170964906 + MIR SINE MIR 2 152 -110 329 281 7 0 chr4 13323805 13323940 -170964722 + (CATATA)n Simple_repeat Simple_repeat 3 138 0 1460 205 59 137 chr4 13324221 13324733 -170963929 + MER70A LTR ERVL 1 472 0 225 339 37 46 chr4 13324848 13325032 -170963630 - MIR3 SINE MIR -63 145 3 522 296 39 0 chr4 13325244 13325423 -170963239 - MER5A DNA MER1_type 0 189 4 373 304 20 98 chr4 13325498 13325794 -170962868 - LTR16A LTR ERVL -12 438 166 277 294 65 0 chr4 13326060 13326152 -170962510 + MIR SINE MIR 39 136 -126 1385 251 137 7 chr4 13326512 13326922 -170961740 - MLT1F LTR MaLR -74 468 6 237 281 8 70 chr4 13327910 13328038 -170960624 + MIR SINE MIR 16 135 -73 1627 156 181 8 chr4 13328268 13328633 -170960029 + MSTA LTR MaLR 1 428 0 271 163 33 22 chr4 13328687 13328779 -170959883 + (TA)n Simple_repeat Simple_repeat 2 94 0 309 172 0 0 chr4 13329631 13329695 -170958967 + CT-rich Low_complexity Low_complexity 3 66 0 2101 136 0 0 chr4 13329697 13330006 -170958656 - AluY SINE Alu -2 309 1 882 92 8 0 chr4 13330006 13330125 -170958537 - AluSq/x SINE Alu -176 136 17 264 351 152 0 chr4 13330549 13330720 -170957942 + MIR SINE MIR 53 249 -13 2083 208 36 5 chr4 13330726 13331139 -170957523 + MSTB LTR MaLR 1 426 0 194 359 162 6 chr4 13331238 13331405 -170957257 + MIR SINE MIR 14 206 -56 1065 228 4 4 chr4 13331672 13331900 -170956762 + L1MA9 LINE L1 49 276 -6754 9140 257 44 27 chr4 13331919 13336832 -170951830 + L1MA9 LINE L1 1217 5916 -1190 1110 90 0 0 chr4 13336832 13336976 -170951686 + AluY SINE Alu 155 298 -13 4431 190 28 84 chr4 13336978 13338400 -170950262 + L1MA9 LINE L1 5911 7272 0 331 307 63 24 chr4 13338562 13338689 -170949973 - L2 LINE L2 -25 3247 3116 269 263 26 0 chr4 13338708 13338784 -170949878 - MER116 DNA Mariner 0 80 3 189 319 11 53 chr4 13339605 13339699 -170948963 - MIR SINE MIR -1 261 172 204 40 0 0 chr4 13339837 13339862 -170948800 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 1647 179 14 3 chr4 13340030 13340327 -170948335 - MLT1A1 LTR MaLR -49 316 17 268 216 0 0 chr4 13340515 13340566 -170948096 - MIR SINE MIR -135 127 77 191 321 115 32 chr4 13340821 13341039 -170947623 - L2 LINE L2 -927 2387 2152 2511 159 65 24 chr4 13341705 13342245 -170946417 + L1MA7 LINE L1 5730 6291 0 552 236 21 7 chr4 13342586 13342726 -170945936 - MER103 DNA DNA -24 142 1 21 0 0 0 chr4 13343755 13343776 -170944886 + AT_rich Low_complexity Low_complexity 1 21 0 1254 221 18 11 chr4 13344180 13344456 -170944206 + AluJo SINE Alu 16 293 -19 23 54 0 0 chr4 13344877 13344914 -170943748 + AT_rich Low_complexity Low_complexity 1 37 0 1918 96 54 0 chr4 13345336 13345596 -170943066 + AluSp SINE Alu 3 276 -37 270 0 0 0 chr4 13345600 13345630 -170943032 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 22 70 0 0 chr4 13347844 13347887 -170940775 + AT_rich Low_complexity Low_complexity 1 43 0 25 51 0 0 chr4 13348643 13348682 -170939980 + AT_rich Low_complexity Low_complexity 1 39 0 186 213 148 33 chr4 13348745 13348806 -170939856 + MIR SINE MIR 87 154 -108 813 246 69 3 chr4 13348921 13349222 -170939440 - MER33 DNA MER1_type -6 318 1 383 342 31 26 chr4 13349334 13349527 -170939135 - MIR3 SINE MIR -1 207 14 2452 146 21 17 chr4 13349651 13350070 -170938592 - MSTA LTR MaLR -7 421 1 250 267 25 0 chr4 13350712 13350825 -170937837 + MIR SINE MIR 40 153 -64 387 0 0 0 chr4 13351296 13351339 -170937323 + (TA)n Simple_repeat Simple_repeat 2 44 0 9078 164 18 7 chr4 13351469 13352164 -170936498 - L1MA1 LINE L1 -4 6298 5612 477 0 0 0 chr4 13352164 13352217 -170936445 + (TG)n Simple_repeat Simple_repeat 2 54 0 9078 164 18 7 chr4 13352217 13354277 -170934385 - L1MA1 LINE L1 -690 5612 3511 192 216 0 0 chr4 13354385 13354436 -170934226 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 662 163 16 24 chr4 13354455 13354578 -170934084 + FRAM SINE Alu 12 133 -43 253 192 0 0 chr4 13354589 13354641 -170934021 + Alu SINE Alu 239 290 -12 269 316 18 9 chr4 13355352 13355466 -170933196 - MLT1G-int LTR MaLR -1619 116 2 1301 288 79 21 chr4 13355482 13356057 -170932605 - MLT1G LTR MaLR -18 572 3 213 376 14 21 chr4 13356701 13356842 -170931820 - MIR3 SINE MIR -67 141 2 190 277 69 30 chr4 13357532 13357633 -170931029 + MIR SINE MIR 79 183 -79 1797 143 69 69 chr4 13357645 13358024 -170930638 + MLT1B LTR MaLR 12 390 0 237 276 11 24 chr4 13358920 13359019 -170929643 - MIR SINE MIR -96 112 15 210 143 61 0 chr4 13359058 13359107 -170929555 + (CAAA)n Simple_repeat Simple_repeat 4 55 0 1184 66 7 0 chr4 13359555 13359706 -170928956 + AluY SINE Alu 152 303 -8 1319 315 95 35 chr4 13360273 13360865 -170927797 - L2 LINE L2 -8 3305 2639 2233 123 0 0 chr4 13360865 13361173 -170927489 + AluSg SINE Alu 1 308 -2 1319 315 95 35 chr4 13361173 13361467 -170927195 - L2 LINE L2 -674 2639 2364 267 323 69 39 chr4 13361589 13361719 -170926943 - L2 LINE L2 -219 3053 2920 2257 230 9 25 chr4 13362102 13362559 -170926103 + MLT2B1 LTR ERVL 1 463 -57 285 29 0 0 chr4 13362559 13362593 -170926069 + (TCCC)n Simple_repeat Simple_repeat 2 35 0 2257 230 9 25 chr4 13362593 13362622 -170926040 + MLT2B1 LTR ERVL 463 481 -39 699 108 0 0 chr4 13362622 13362733 -170925929 + (TCTA)n Simple_repeat Simple_repeat 2 112 0 2257 230 9 25 chr4 13362733 13362771 -170925891 + MLT2B1 LTR ERVL 481 518 -2 268 314 86 9 chr4 13363300 13363408 -170925254 - MIR SINE MIR -63 145 53 302 289 36 0 chr4 13363528 13363611 -170925051 + L2 LINE L2 3227 3312 -1 204 158 0 0 chr4 13363763 13363801 -170924861 + (TG)n Simple_repeat Simple_repeat 1 38 0 698 243 107 6 chr4 13364021 13364190 -170924472 + MER58A DNA MER1_type 2 187 -37 287 360 0 20 chr4 13364214 13364314 -170924348 - MIR3 SINE MIR -48 160 63 2283 98 0 0 chr4 13365268 13365564 -170923098 - AluSg SINE Alu -14 296 1 249 196 36 0 chr4 13365774 13365830 -170922832 - LTR67 LTR ERVL -5 552 495 232 368 42 14 chr4 13366414 13366558 -170922104 + MLT1K LTR MaLR 354 501 -87 273 29 0 0 chr4 13367110 13367144 -170921518 + (CA)n Simple_repeat Simple_repeat 1 34 0 210 71 0 0 chr4 13367151 13367179 -170921483 + (GAAAA)n Simple_repeat Simple_repeat 5 32 0 338 288 77 35 chr4 13367451 13367621 -170921041 - MIR SINE MIR -33 229 53 1301 228 39 43 chr4 13368078 13368544 -170920118 - MLT2C2 LTR ERVL 0 464 1 541 256 23 118 chr4 13371647 13371952 -170916710 + L2 LINE L2 3038 3313 0 21 0 0 0 chr4 13373428 13373449 -170915213 + AT_rich Low_complexity Low_complexity 1 21 0 308 246 171 40 chr4 13373974 13374149 -170914513 + MIR SINE MIR 53 250 -12 2094 110 20 6 chr4 13374950 13375386 -170913276 - L1PA12 LINE L1 -589 5574 5135 * 2581 110 19 0 chr4 13375384 13375758 -170912904 + L1PA12 LINE L1 5578 5958 -210 304 229 48 19 chr4 13375900 13376005 -170912657 + L1PA12 LINE L1 5911 6018 -150 477 191 48 0 chr4 13376013 13376118 -170912544 + L1PA12 LINE L1 6052 6161 -7 21 0 0 0 chr4 13376118 13376139 -170912523 + AT_rich Low_complexity Low_complexity 1 21 0 403 308 58 38 chr4 13376686 13376937 -170911725 + MIR SINE MIR 8 261 -1 246 335 56 1 chr4 13377042 13377150 -170911512 + MIR SINE MIR 49 160 -62 333 321 43 74 chr4 13377196 13377495 -170911167 + L2 LINE L2 2207 2496 -818 279 279 0 0 chr4 13377728 13377796 -170910866 + L2 LINE L2 3163 3230 -42 2278 82 0 0 chr4 13379487 13379812 -170908850 + AluY SINE Alu 1 325 0 420 317 44 29 chr4 13379865 13380070 -170908592 - L2 LINE L2 -10 3303 3096 263 317 94 27 chr4 13380049 13380273 -170908389 - L2 LINE L2 -3064 250 12 * 7316 36 15 7 chr4 13380531 13381894 -170906768 - L1PA4 LINE L1 -3 6152 4785 2010 132 14 0 chr4 13381910 13382206 -170906456 + AluSx SINE Alu 1 300 -12 180 0 0 0 chr4 13382206 13382226 -170906436 + (GGGGA)n Simple_repeat Simple_repeat 1 20 0 35 24 0 0 chr4 13382547 13382589 -170906073 + AT_rich Low_complexity Low_complexity 1 42 0 455 324 66 41 chr4 13383568 13383960 -170904702 + L1MC/D LINE L1 2676 3077 -3069 35 78 0 0 chr4 13384104 13384181 -170904481 + AT_rich Low_complexity Low_complexity 1 77 0 378 261 79 94 chr4 13385211 13385414 -170903248 - MIR SINE MIR -58 204 5 342 295 6 64 chr4 13385421 13385594 -170903068 + L1MC/D LINE L1 5305 5467 -2341 325 93 0 0 chr4 13385632 13385686 -170902976 + Alu SINE Alu 247 300 0 2017 125 24 0 chr4 13385707 13385996 -170902666 + AluSg SINE Alu 1 296 -14 254 308 113 8 chr4 13386075 13386208 -170902454 + MLT1I LTR MaLR 3 149 -260 24 32 0 0 chr4 13386221 13386252 -170902410 + AT_rich Low_complexity Low_complexity 1 31 0 1944 106 0 35 chr4 13386341 13386623 -170902039 + AluSg SINE Alu 1 272 -38 184 255 21 0 chr4 13386869 13386916 -170901746 + L2 LINE L2 3213 3260 -12 23 54 0 0 chr4 13388321 13388358 -170900304 + AT_rich Low_complexity Low_complexity 1 37 0 195 162 0 0 chr4 13388599 13388636 -170900026 + (ATG)n Simple_repeat Simple_repeat 1 37 0 271 261 0 14 chr4 13388811 13388880 -170899782 + GA-rich Low_complexity Low_complexity 3 70 0 946 275 104 51 chr4 13390419 13391004 -170897658 - L1ME3A LINE L1 0 6170 5555 802 149 52 112 chr4 13391072 13391340 -170897322 + L1MA7 LINE L1 6040 6291 0 934 210 7 7 chr4 13391361 13398210 -170890452 - ALR/Alpha Satellite centromeric -2 9847 3001 2066 82 21 85 chr4 13398210 13398539 -170890123 - AluY SINE Alu -3 308 1 934 210 7 7 chr4 13398539 13399417 -170889245 - ALR/Alpha Satellite centromeric -6848 3001 2125 2099 121 0 34 chr4 13399417 13399739 -170888923 - AluY SINE Alu 0 311 1 934 210 7 7 chr4 13399739 13401206 -170887456 - ALR/Alpha Satellite centromeric -7724 2125 1 905 211 13 8 chr4 13401222 13404754 -170883908 - ALR/Alpha Satellite centromeric 0 3549 1 992 193 7 0 chr4 13404775 13406604 -170882058 - ALR/Alpha Satellite centromeric 0 1841 1 913 194 24 6 chr4 13406617 13407322 -170881340 - ALR/Alpha Satellite centromeric 0 717 1 637 279 124 18 chr4 13407331 13407783 -170880879 - L1M4 LINE L1 -2193 3953 3454 26 0 0 0 chr4 13407816 13407842 -170880820 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr4 13407864 13407889 -170880773 + AT_rich Low_complexity Low_complexity 1 25 0 2663 112 19 2 chr4 13407889 13408307 -170880355 - L1PA13 LINE L1 -5 6158 5734 736 173 8 16 chr4 13408307 13408434 -170880228 - FRAM SINE Alu -22 154 29 2384 203 60 41 chr4 13408454 13409162 -170879500 + LTR1B LTR ERV1 43 762 -23 591 208 0 0 chr4 13409199 13409305 -170879357 - FLAM_C SINE Alu -37 106 1 903 259 60 78 chr4 13409436 13410207 -170878455 - L1M4 LINE L1 -3180 2966 2210 471 232 0 27 chr4 13410272 13410384 -170878278 - MER103 DNA DNA -34 132 24 245 235 39 0 chr4 13410798 13410849 -170877813 - MLT1J2 LTR MaLR -123 327 275 2469 48 0 32 chr4 13411150 13411463 -170877199 + AluY SINE Alu 1 303 -8 205 358 133 0 chr4 13411629 13411780 -170876882 - MIR SINE MIR -14 248 78 263 267 30 61 chr4 13412546 13412677 -170875985 - MIR SINE MIR -42 220 94 1119 250 75 50 chr4 13412998 13413422 -170875240 + MLT1D LTR MaLR 3 437 -68 356 181 28 0 chr4 13414528 13414600 -170874062 - AluJ/FRAM SINE Alu -2 300 227 1959 170 40 36 chr4 13415182 13415727 -170872935 - MLT2A2 LTR ERVL 0 554 5 238 284 0 15 chr4 13415849 13415916 -170872746 + MLT1G1 LTR MaLR 1 66 -524 351 254 210 17 chr4 13416038 13416219 -170872443 + MLT1G1 LTR MaLR 33 248 -282 * 376 340 35 35 chr4 13416215 13416359 -170872303 + MLT1G1 LTR MaLR 374 517 -78 4665 120 52 11 chr4 13416364 13417107 -170871555 - MER4E LTR ERV1 -5 774 1 247 247 0 13 chr4 13417113 13417190 -170871472 + MLT1G1 LTR MaLR 520 595 0 342 284 69 17 chr4 13417892 13418008 -170870654 - MER5A DNA MER1_type -30 159 38 255 288 96 40 chr4 13417906 13418031 -170870631 + MER5A DNA MER1_type 55 186 -3 * 246 275 92 50 chr4 13418160 13418280 -170870382 + LTR16A LTR ERVL 1 125 -325 394 238 121 44 chr4 13418886 13419092 -170869570 + L1MC4 LINE L1 6465 6686 -1356 303 104 0 0 chr4 13419145 13419193 -170869469 + (CA)n Simple_repeat Simple_repeat 2 49 0 1117 290 144 27 chr4 13419218 13419731 -170868931 + MLT1G1 LTR MaLR 23 595 0 247 151 38 38 chr4 13419735 13419788 -170868874 - L2 LINE L2 -950 2364 2312 28 61 0 0 chr4 13419835 13419884 -170868778 + AT_rich Low_complexity Low_complexity 1 49 0 252 315 22 11 chr4 13419938 13420027 -170868635 - L2 LINE L2 -639 2675 2586 279 356 111 0 chr4 13420339 13420474 -170868188 + MIR SINE MIR 103 252 -10 192 40 0 0 chr4 13421492 13421517 -170867145 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 291 294 49 0 chr4 13421671 13421773 -170866889 + MIR SINE MIR 32 138 -124 338 61 20 0 chr4 13422003 13422052 -170866610 + (CA)n Simple_repeat Simple_repeat 2 51 0 338 321 80 28 chr4 13422637 13422849 -170865813 + MIR SINE MIR 10 232 -30 366 333 76 18 chr4 13422986 13423211 -170865451 + L2 LINE L2 2828 3065 -248 321 278 113 46 chr4 13423478 13423672 -170864990 + MIR SINE MIR 26 232 -30 8046 248 54 18 chr4 13423865 13424619 -170864043 - L1MB7 LINE L1 -19 6663 5938 4996 150 29 4 chr4 13424619 13426168 -170862494 - L1PA13 LINE L1 0 6163 4591 8046 248 54 18 chr4 13426168 13426572 -170862090 - L1MB7 LINE L1 -744 5938 5550 522 70 0 0 chr4 13426572 13426643 -170862019 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 8046 248 54 18 chr4 13426643 13429158 -170859504 - L1MB7 LINE L1 -1132 5550 2847 457 182 0 0 chr4 13429158 13429235 -170859427 + U6 snRNA snRNA 31 107 0 626 281 83 45 chr4 13429238 13430191 -170858471 - L1MB7 LINE L1 -3785 2887 1730 * 3648 152 3 8 chr4 13430189 13430781 -170857881 + L1PA15 LINE L1 5556 6144 -21 1337 252 23 31 chr4 13430795 13431184 -170857478 - L1MB7 LINE L1 -6149 393 8 3839 119 0 0 chr4 13431630 13432183 -170856479 + MER41A LTR ERV1 2 554 0 1210 219 25 4 chr4 13432686 13432960 -170855702 - AluJo SINE Alu -22 290 11 1137 299 139 14 chr4 13433515 13434283 -170854379 + Charlie8 DNA MER1_type 2 865 -1552 1739 291 59 48 chr4 13434465 13435538 -170853124 + Charlie8 DNA MER1_type 1171 2254 -163 1360 214 33 55 chr4 13435911 13436275 -170852387 - MLT1A1 LTR MaLR 0 365 10 26 30 0 0 chr4 13437349 13437382 -170851280 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr4 13438081 13438102 -170850560 + AT_rich Low_complexity Low_complexity 1 21 0 720 286 48 4 chr4 13438299 13438530 -170850132 + MIR SINE MIR 20 260 -2 268 188 31 42 chr4 13438614 13438710 -170849952 + T-rich Low_complexity Low_complexity 1 95 0 26 30 0 0 chr4 13438989 13439022 -170849640 + AT_rich Low_complexity Low_complexity 1 33 0 451 334 113 36 chr4 13440390 13440560 -170848102 + L3 LINE CR1 1109 1264 -313 237 33 0 0 chr4 13440560 13440590 -170848072 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 451 334 113 36 chr4 13440590 13440754 -170847908 + L3 LINE CR1 1264 1469 -108 530 351 88 39 chr4 13441909 13442316 -170846346 - LTR16A LTR ERVL -6 444 18 925 213 150 57 chr4 13442860 13443194 -170845468 + MLT1A1 LTR MaLR 1 365 0 552 293 140 13 chr4 13443335 13443564 -170845098 + MIR SINE MIR 3 260 -2 183 430 0 0 chr4 13443606 13443692 -170844970 - MIR SINE MIR -170 92 7 251 264 66 44 chr4 13443878 13443969 -170844693 + MIR SINE MIR 119 211 -51 359 180 16 0 chr4 13446364 13446425 -170842237 - L3 LINE CR1 -124 1453 1392 184 227 0 45 chr4 13446517 13446561 -170842101 - L3 LINE CR1 -344 1233 1192 363 297 11 2 chr4 13446938 13447052 -170841610 - MIR SINE MIR -66 142 34 208 270 16 0 chr4 13447074 13447137 -170841525 + (CATATA)n Simple_repeat Simple_repeat 4 67 0 188 306 47 24 chr4 13447240 13447325 -170841337 + MIR SINE MIR 53 139 -123 1564 227 28 18 chr4 13447591 13447983 -170840679 + MSTD LTR MaLR 1 396 0 22 0 0 0 chr4 13448324 13448346 -170840316 + AT_rich Low_complexity Low_complexity 1 22 0 1241 231 98 50 chr4 13449023 13449443 -170839219 + MLT1D LTR MaLR 1 440 -65 2142 176 37 28 chr4 13449455 13450000 -170838662 - MLT2A2 LTR ERVL 0 554 1 313 212 0 0 chr4 13450000 13450065 -170838597 + MLT1D LTR MaLR 441 505 0 2125 83 45 3 chr4 13450453 13450742 -170837920 + AluY SINE Alu 1 301 -10 3396 44 0 0 chr4 13450752 13451163 -170837499 + L1PA5 LINE L1 5419 5829 -325 41317 46 23 6 chr4 13451163 13457211 -170831451 + L1PA3 LINE L1 1 6155 0 2699 51 0 0 chr4 13457221 13457557 -170831105 + L1PA5 LINE L1 5814 6149 -5 531 186 31 39 chr4 13457759 13457888 -170830774 + THE1C LTR MaLR 198 325 -50 3432 189 30 7 chr4 13457897 13459081 -170829581 - L1 LINE L1 -3384 4181 2967 1814 180 46 25 chr4 13459081 13459448 -170829214 + THE1C LTR MaLR 1 375 0 884 169 12 0 chr4 13459449 13459609 -170829053 + THE1C-int LTR MaLR 2 163 -1417 27143 104 9 3 chr4 13459613 13464537 -170824125 - L1PA7 LINE L1 -8 6146 1192 856 133 7 40 chr4 13464540 13464691 -170823971 + THE1C LTR MaLR 230 375 0 10551 156 33 5 chr4 13464691 13466495 -170822167 - L1 LINE L1 -4594 2971 1117 4468 215 36 18 chr4 13466505 13467482 -170821180 - L1 LINE L1 -6562 1003 10 334 268 98 8 chr4 13467835 13467958 -170820704 - MIR SINE MIR -64 198 65 250 310 131 41 chr4 13468710 13468855 -170819807 + L2 LINE L2 3156 3313 0 180 314 86 0 chr4 13469002 13469072 -170819590 + L3 LINE CR1 1007 1082 -495 246 336 57 29 chr4 13469205 13469234 -170819428 - L2 LINE L2 -2 3311 3284 2405 148 25 23 chr4 13469234 13469665 -170818997 - MSTB1 LTR MaLR 0 432 1 246 336 57 29 chr4 13469665 13469775 -170818887 - L2 LINE L2 -29 3284 3168 2143 172 42 32 chr4 13469809 13470350 -170818312 + MLT2A2 LTR ERVL 4 554 0 503 285 55 84 chr4 13470365 13470608 -170818054 - L1MC4a LINE L1 -1725 6083 5859 2026 183 6 81 chr4 13470608 13471077 -170817585 - Tigger2a DNA MER2_type 0 434 1 503 285 55 84 chr4 13471077 13471307 -170817355 - L1MC4a LINE L1 -1949 5859 5624 2059 136 14 0 chr4 13471325 13471620 -170817042 - AluSx SINE Alu -13 299 1 33 25 0 0 chr4 13472422 13472462 -170816200 + AT_rich Low_complexity Low_complexity 1 40 0 1556 191 6 41 chr4 13473074 13473388 -170815274 + AluJb SINE Alu 1 303 -9 180 111 0 0 chr4 13473706 13473733 -170814929 + (TG)n Simple_repeat Simple_repeat 2 28 0 24 53 0 0 chr4 13474172 13474210 -170814452 + AT_rich Low_complexity Low_complexity 1 38 0 252 184 0 0 chr4 13474766 13474815 -170813847 + (CATA)n Simple_repeat Simple_repeat 2 50 0 188 330 17 68 chr4 13475593 13475711 -170812951 + MIR SINE MIR 63 174 -88 535 318 8 34 chr4 13475719 13475955 -170812707 - L2 LINE L2 -2 3311 3082 428 317 33 0 chr4 13476056 13476176 -170812486 - MIR SINE MIR -31 231 108 23 0 0 0 chr4 13477288 13477311 -170811351 + AT_rich Low_complexity Low_complexity 1 23 0 341 320 43 43 chr4 13477534 13477765 -170810897 - MIR SINE MIR 0 262 32 567 332 101 49 chr4 13479246 13479917 -170808745 + L2 LINE L2 1773 2478 -836 300 227 76 0 chr4 13480284 13480350 -170808312 + L2 LINE L2 3201 3271 -1 1953 147 7 10 chr4 13480464 13480764 -170807898 + AluSc SINE Alu 1 299 -10 188 360 132 37 chr4 13481071 13481207 -170807455 + L2 LINE L2 3122 3270 -2 3243 139 33 6 chr4 13481220 13481759 -170806903 + MER41C LTR ERV1 1 554 0 1592 165 66 33 chr4 13481959 13482322 -170806340 - THE1C LTR MaLR 0 375 1 342 316 124 19 chr4 13482451 13482774 -170805888 - MLT1J2 LTR MaLR -58 392 36 818 328 50 39 chr4 13482870 13483461 -170805201 - L2 LINE L2 -5 3308 2704 294 95 0 0 chr4 13483672 13483714 -170804948 + (A)n Simple_repeat Simple_repeat 1 42 0 414 357 58 6 chr4 13484413 13484584 -170804078 - MIR SINE MIR -62 200 21 188 343 58 44 chr4 13484620 13484757 -170803905 + MIR SINE MIR 60 198 -64 222 280 160 10 chr4 13484783 13484883 -170803779 - MIR SINE MIR -29 233 119 714 253 134 36 chr4 13484955 13485343 -170803319 - Zaphod DNA AcHobo 0 4031 3606 1299 199 86 65 chr4 13485361 13485919 -170802743 - Zaphod DNA AcHobo -3051 980 411 1541 223 112 48 chr4 13485933 13486372 -170802290 + MLT2B1 LTR ERVL 1 467 -53 285 51 0 0 chr4 13486383 13486422 -170802240 + (TA)n Simple_repeat Simple_repeat 1 39 0 282 128 0 0 chr4 13486777 13486824 -170801838 + MLT2B1 LTR ERVL 466 512 -8 320 311 60 46 chr4 13486986 13487137 -170801525 - Zaphod DNA AcHobo -3804 227 75 272 231 134 82 chr4 13487202 13487336 -170801326 - MER58B DNA MER1_type -15 326 186 1517 156 75 17 chr4 13488137 13488432 -170800230 + AluSx SINE Alu 1 312 0 453 173 9 18 chr4 13488437 13488547 -170800115 + GA-rich Low_complexity Low_complexity 3 111 0 1380 204 0 38 chr4 13488549 13488838 -170799824 + AluJo SINE Alu 17 294 -18 257 333 0 0 chr4 13489425 13489503 -170799159 + (TG)n Simple_repeat Simple_repeat 2 79 0 223 327 154 0 chr4 13489917 13490021 -170798641 - L2 LINE L2 0 3313 3194 292 349 170 0 chr4 13490087 13490299 -170798363 - MIR SINE MIR -13 249 2 1289 232 19 40 chr4 13491425 13491815 -170796847 - MER66A LTR ERV1 -40 438 88 231 36 0 0 chr4 13492223 13492251 -170796411 + (A)n Simple_repeat Simple_repeat 1 28 0 1496 149 8 0 chr4 13492426 13492674 -170795988 - L1MA4 LINE L1 -278 6022 5773 1260 280 81 37 chr4 13493077 13493918 -170794744 + L1ME3A LINE L1 5122 5996 -174 617 297 93 45 chr4 13494650 13494806 -170793856 + LTR16A LTR ERVL 23 170 -280 2035 192 68 48 chr4 13494806 13495307 -170793355 - MER67D LTR ERV1 -1 513 3 617 297 93 45 chr4 13495307 13495547 -170793115 + LTR16A LTR ERVL 170 438 -12 24 0 0 0 chr4 13496165 13496189 -170792473 + AT_rich Low_complexity Low_complexity 1 24 0 1145 268 31 25 chr4 13496422 13496776 -170791886 + MLT1A1 LTR MaLR 10 365 0 23 54 0 0 chr4 13497095 13497132 -170791530 + AT_rich Low_complexity Low_complexity 1 37 0 380 291 58 7 chr4 13497135 13497413 -170791249 + L1ME2 LINE L1 2924 3215 -2931 27 0 0 0 chr4 13497485 13497512 -170791150 + AT_rich Low_complexity Low_complexity 1 27 0 593 309 125 45 chr4 13497931 13498827 -170789835 + L1ME2 LINE L1 4976 5947 -217 22 0 0 0 chr4 13498832 13498854 -170789808 + AT_rich Low_complexity Low_complexity 1 22 0 284 236 28 0 chr4 13498860 13498932 -170789730 - LTR16A LTR ERVL -8 442 369 2153 179 33 31 chr4 13498934 13499358 -170789304 - MSTB LTR MaLR -1 425 1 7700 218 39 13 chr4 13499358 13500290 -170788372 - MSTB-int LTR MaLR 0 1651 658 1470 39 0 11 chr4 13500290 13500472 -170788190 + L1PA4 LINE L1 5969 6148 -7 7700 218 39 13 chr4 13500472 13501148 -170787514 - MSTB-int LTR MaLR -993 658 1 2311 176 19 30 chr4 13501148 13501579 -170787083 - MSTB LTR MaLR 0 426 1 2644 93 6 6 chr4 13501679 13502043 -170786619 + THE1B LTR MaLR 1 364 0 29 60 0 0 chr4 13502422 13502472 -170786190 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr4 13502658 13502679 -170785983 + AT_rich Low_complexity Low_complexity 1 21 0 1585 264 21 17 chr4 13502933 13503353 -170785309 + MLT1A2-int LTR MaLR 1314 1735 0 764 204 39 185 chr4 13503353 13503790 -170784872 + MLT1A2 LTR MaLR 1 373 -1 968 344 33 7 chr4 13503792 13504222 -170784440 - LTR16C LTR ERVL -19 472 32 278 336 87 47 chr4 13504688 13504965 -170783697 + L3 LINE CR1 1262 1549 -28 962 191 158 51 chr4 13506283 13506556 -170782106 + AluJb SINE Alu 1 302 0 1887 141 25 0 chr4 13506704 13507006 -170781656 - AluSg SINE Alu 0 309 1 302 359 29 34 chr4 13507400 13507606 -170781056 + MIR SINE MIR 19 223 -39 183 329 174 34 chr4 13507846 13508053 -170780609 - L2 LINE L2 -177 3095 2860 2077 250 83 7 chr4 13509188 13509793 -170778869 - MLT1E1 LTR MaLR -2 652 2 207 286 95 0 chr4 13509834 13509918 -170778744 - MIR SINE MIR -164 98 7 1330 276 30 58 chr4 13510689 13511295 -170777367 - MLT1E LTR MaLR 0 593 5 188 389 11 11 chr4 13511300 13511390 -170777272 + MIR SINE MIR 3 92 -170 2594 171 19 42 chr4 13511433 13512025 -170776637 - L1MA7 LINE L1 0 6291 5714 212 348 45 0 chr4 13512116 13512205 -170776457 + MIR SINE MIR 65 157 -105 1022 183 31 0 chr4 13513058 13513249 -170775413 - MSTB LTR MaLR 0 426 230 1307 114 0 0 chr4 13513251 13513426 -170775236 - AluSx SINE Alu -137 175 1 1192 191 0 0 chr4 13513427 13513626 -170775036 - MSTB LTR MaLR -227 199 1 1577 188 68 9 chr4 13513892 13514232 -170774430 - MLT1A1 LTR MaLR -2 363 4 1572 213 19 35 chr4 13515157 13515523 -170773139 + MLT1A1 LTR MaLR 1 360 -5 347 262 130 92 chr4 13516130 13516375 -170772287 + L1MEc LINE L1 1258 1492 -4904 2029 128 57 35 chr4 13516375 13516742 -170771920 - THE1C LTR MaLR 0 375 1 347 262 130 92 chr4 13516742 13517082 -170771580 + L1MEc LINE L1 1492 1818 -4578 186 0 88 0 chr4 13517082 13517116 -170771546 + (TA)n Simple_repeat Simple_repeat 1 37 0 347 262 130 92 chr4 13517116 13517524 -170771138 + L1MEc LINE L1 1818 2289 -4107 2243 56 11 31 chr4 13518110 13518420 -170770242 - AluY SINE Alu 0 304 1 338 215 77 62 chr4 13518516 13518646 -170770016 + L1MEc LINE L1 3140 3271 -2944 367 314 48 67 chr4 13518796 13519127 -170769535 - L1MC4a LINE L1 -1880 5928 5604 236 268 81 16 chr4 13519267 13519390 -170769272 - L1P LINE L1 -736 5420 5290 21 57 0 0 chr4 13521576 13521611 -170767051 + AT_rich Low_complexity Low_complexity 1 35 0 26755 31 1 0 chr4 13521694 13525725 -170762937 + L1PA2 LINE L1 2124 6155 0 1772 142 151 11 chr4 13525747 13526099 -170762563 - MSTA LTR MaLR -27 401 1 279 200 0 0 chr4 13526129 13526184 -170762478 + Charlie8 DNA MER1_type 2362 2416 -1 355 247 43 91 chr4 13527603 13527789 -170760873 + LTR16A LTR ERVL 268 444 -6 21 89 0 0 chr4 13527863 13527919 -170760743 + AT_rich Low_complexity Low_complexity 1 56 0 218 316 122 31 chr4 13528312 13528410 -170760252 + MIR SINE MIR 21 127 -81 21 57 0 0 chr4 13528653 13528688 -170759974 + AT_rich Low_complexity Low_complexity 1 35 0 504 250 96 0 chr4 13529590 13529726 -170758936 + MER106B DNA MER1_type 1 149 -910 2135 137 0 0 chr4 13531448 13531761 -170756901 + AluSq SINE Alu 1 313 0 320 215 54 43 chr4 13532751 13532844 -170755818 + MIR3 SINE MIR 109 202 -6 765 222 192 45 chr4 13533600 13533866 -170754796 + MLT1A1 LTR MaLR 1 305 -60 922 230 5 15 chr4 13533866 13534104 -170754558 - AluJb SINE Alu 0 320 85 381 103 17 0 chr4 13534108 13534166 -170754496 + MLT1A1 LTR MaLR 398 456 -1 1102 242 70 15 chr4 13535073 13535416 -170753246 + MLT2D LTR ERVL 1 362 -52 208 276 0 0 chr4 13535426 13535484 -170753178 + CT-rich Low_complexity Low_complexity 2 59 0 434 228 0 0 chr4 13535597 13535675 -170752987 + Tigger5 DNA MER2_type 1 78 -2245 362 221 26 0 chr4 13535675 13535752 -170752910 - Tigger5 DNA MER2_type -3 2320 2242 * 423 198 0 12 chr4 13535742 13535823 -170752839 + Tigger5 DNA MER2_type 2242 2321 -2 187 250 0 19 chr4 13536774 13536826 -170751836 + MIR SINE MIR 161 211 -51 999 243 123 7 chr4 13537973 13538274 -170750388 + LTR52 LTR ERVL 84 419 -2 1716 256 45 14 chr4 13538275 13538848 -170749814 + L1ME2 LINE L1 5311 5901 -263 863 306 37 42 chr4 13538848 13539201 -170749461 + LTR16B LTR ERVL 11 361 -103 2318 157 26 17 chr4 13539227 13539642 -170749020 + L1MA8 LINE L1 5453 5871 -420 2611 245 36 40 chr4 13539696 13540263 -170748399 + L1ME2 LINE L1 5140 5701 -463 1809 177 38 16 chr4 13540263 13540630 -170748032 - THE1C LTR MaLR 0 375 1 2611 245 36 40 chr4 13540630 13541085 -170747577 + L1ME2 LINE L1 5701 6156 -8 454 241 86 9 chr4 13541888 13542004 -170746658 - MER63 DNA MER1_type -311 751 1 28 0 0 0 chr4 13542023 13542051 -170746611 + AT_rich Low_complexity Low_complexity 1 28 0 291 305 24 0 chr4 13542171 13542253 -170746409 - MIR SINE MIR -116 146 63 2241 105 129 8 chr4 13542285 13542665 -170745997 + LTR7 LTR ERV1 23 448 -2 19144 96 45 14 chr4 13542667 13545567 -170743095 + HERVH LTR ERV1 1 2987 -4726 6276 74 5 5 chr4 13545561 13546415 -170742247 + HERVH LTR ERV1 3140 3993 -3720 * 4330 148 0 1 chr4 13546417 13547080 -170741582 + HERVH LTR ERV1 4488 5149 -2564 1330 148 19 0 chr4 13547081 13547297 -170741365 + HERVH LTR ERV1 5600 5819 -1894 2440 90 45 16 chr4 13547297 13547676 -170740986 + HERVH LTR ERV1 7324 7713 0 2520 72 130 12 chr4 13547676 13548077 -170740585 + LTR7 LTR ERV1 1 448 -2 339 284 35 71 chr4 13548321 13548462 -170740200 + MIR SINE MIR 6 141 -121 261 341 24 35 chr4 13549343 13549513 -170739149 - MIR SINE MIR -65 197 30 2227 175 44 5 chr4 13549674 13550086 -170738576 + MSTA LTR MaLR 1 428 0 21 0 0 0 chr4 13550134 13550155 -170738507 + AT_rich Low_complexity Low_complexity 1 21 0 2249 110 0 3 chr4 13550574 13550883 -170737779 - AluSc SINE Alu 0 309 2 23 54 0 0 chr4 13550885 13550922 -170737740 + AT_rich Low_complexity Low_complexity 1 37 0 200 338 65 19 chr4 13551531 13551685 -170736977 + L2 LINE L2 2153 2313 -1001 201 39 0 0 chr4 13552717 13552743 -170735919 + (CA)n Simple_repeat Simple_repeat 1 26 0 1887 169 51 37 chr4 13552937 13553482 -170735180 - MLT2A2 LTR ERVL 0 554 1 260 239 34 34 chr4 13553604 13553692 -170734970 + MIR SINE MIR 75 162 -100 573 321 101 25 chr4 13553733 13554088 -170734574 + L2 LINE L2 2007 2388 -926 430 354 25 22 chr4 13554088 13554362 -170734300 + L2 LINE L2 2505 2779 -535 300 296 65 19 chr4 13555799 13555907 -170732755 - MIR SINE MIR -27 235 123 322 178 178 0 chr4 13557269 13557376 -170731286 - L1MB4 LINE L1 -6 6174 6049 230 342 40 59 chr4 13557377 13557579 -170731083 + L2 LINE L2 2702 2899 -415 193 309 0 0 chr4 13557701 13557756 -170730906 - MIR SINE MIR -118 144 90 2129 56 7 0 chr4 13558040 13558310 -170730352 - AluY SINE Alu -39 272 1 21 0 0 0 chr4 13558831 13558852 -170729810 + AT_rich Low_complexity Low_complexity 1 21 0 222 328 15 60 chr4 13559389 13559523 -170729139 + MER5A DNA MER1_type 8 135 -54 2028 64 64 0 chr4 13559976 13560282 -170728380 - AluY SINE Alu 0 323 1 184 396 10 0 chr4 13560300 13560401 -170728261 - MIR SINE MIR -128 134 33 207 293 102 48 chr4 13560819 13560986 -170727676 - MIR SINE MIR -1 261 86 242 347 56 7 chr4 13561674 13561818 -170726844 - MIR SINE MIR -111 151 1 273 297 78 39 chr4 13562946 13563074 -170725588 + L2 LINE L2 3165 3297 -16 25 31 0 0 chr4 13564123 13564155 -170724507 + AT_rich Low_complexity Low_complexity 1 32 0 285 337 60 12 chr4 13564732 13564898 -170723764 + MIR SINE MIR 47 220 -42 2928 101 21 0 chr4 13565225 13565659 -170723003 - L1PA13 LINE L1 -4 6159 5717 786 199 4 132 chr4 13566534 13566785 -170721877 + MER20 DNA MER1_type 1 219 0 221 290 16 0 chr4 13567087 13567149 -170721513 - MIR SINE MIR -42 220 158 1020 268 57 66 chr4 13567149 13567698 -170720964 - MLT1H1 LTR MaLR 0 555 12 686 184 7 34 chr4 13568553 13568700 -170719962 - FLAM_C SINE Alu 0 143 1 189 0 0 0 chr4 13568967 13568988 -170719674 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2225 128 22 8 chr4 13569080 13569446 -170719216 + THE1C LTR MaLR 1 371 -4 9308 138 49 19 chr4 13569450 13570984 -170717678 + THE1C-int LTR MaLR 1 1580 0 1880 169 16 39 chr4 13570984 13571368 -170717294 + THE1C LTR MaLR 1 375 0 958 49 81 0 chr4 13572670 13572793 -170715869 + MER85 DNA T2_type 1 133 -6 230 191 16 79 chr4 13572759 13572822 -170715840 - MER85 DNA T2_type -6 133 75 * 295 150 3 60 chr4 13573165 13573232 -170715430 + L1M1 LINE L1 5525 5588 -714 1749 183 3 3 chr4 13574506 13574791 -170713871 - AluJb SINE Alu -27 285 1 1428 189 3 6 chr4 13575338 13575650 -170713012 - L1P LINE L1 -4612 1534 1224 4041 307 96 14 chr4 13575658 13577131 -170711531 - L1M2a LINE L1 -5517 1651 48 297 0 0 0 chr4 13577131 13577164 -170711498 + (TG)n Simple_repeat Simple_repeat 2 34 0 4041 307 96 14 chr4 13577164 13577204 -170711458 - L1M2a LINE L1 -7120 48 13 2159 124 0 6 chr4 13579227 13579541 -170709121 - AluSq SINE Alu -1 312 1 367 309 76 57 chr4 13580516 13581195 -170707467 + L1MEc LINE L1 702 1403 -4993 2018 155 25 38 chr4 13581195 13581563 -170707099 + THE1B LTR MaLR 2 364 0 367 309 76 57 chr4 13581563 13581748 -170706914 + L1MEc LINE L1 1403 1583 -4813 1641 255 49 7 chr4 13581753 13582185 -170706477 - MLT1D LTR MaLR -2 503 54 304 350 45 0 chr4 13582186 13582343 -170706319 - HERVL LTR ERVL -3238 2416 2253 1488 246 23 11 chr4 13582362 13582712 -170705950 - MLT1A1 LTR MaLR -9 356 3 1728 293 29 55 chr4 13582713 13583301 -170705361 - HERVL LTR ERVL -2753 2260 1726 2253 116 0 0 chr4 13583301 13583603 -170705059 - AluSc SINE Alu -7 302 1 1728 293 29 55 chr4 13583603 13583892 -170704770 - HERVL LTR ERVL -3287 1726 1431 580 328 47 19 chr4 13584398 13584654 -170704008 - LTR16A LTR ERVL -78 372 110 698 244 48 26 chr4 13584748 13585019 -170703643 + L1ME2 LINE L1 5333 5609 -555 409 238 20 10 chr4 13585023 13585124 -170703538 - MER8 DNA MER2_type 0 239 138 1475 264 14 68 chr4 13585170 13585743 -170702919 + L1ME2 LINE L1 5615 6156 -8 576 292 117 42 chr4 13586299 13586539 -170702123 + MIR SINE MIR 5 262 0 283 255 28 66 chr4 13587026 13587132 -170701530 + MIR3 SINE MIR 69 170 -38 291 320 112 15 chr4 13587379 13587576 -170701086 + MIR SINE MIR 13 228 -34 730 290 108 5 chr4 13588065 13588279 -170700383 - MIR SINE MIR -10 252 17 403 362 34 37 chr4 13588595 13588946 -170699716 + L1MD2 LINE L1 4487 4836 -1310 1252 210 6 72 chr4 13589097 13589430 -170699232 - AluJo SINE Alu -1 311 1 2265 119 24 29 chr4 13589700 13590077 -170698585 - THE1C LTR MaLR 0 375 1 227 273 51 100 chr4 13590129 13590440 -170698222 + L1MD2 LINE L1 5314 5609 -2199 9059 36 2 1 chr4 13590464 13591534 -170697128 + MER11C LTR ERVK 1 1071 0 279 313 52 37 chr4 13591703 13591837 -170696825 - MIR SINE MIR -104 158 23 473 263 165 64 chr4 13591896 13592193 -170696469 - MLT1H LTR MaLR -2 547 221 667 225 78 0 chr4 13592459 13592601 -170696061 + MER58B DNA MER1_type 185 337 -4 319 294 75 41 chr4 13593520 13593666 -170694996 + MIR SINE MIR 41 191 -71 219 69 0 0 chr4 13593960 13593989 -170694673 + (GGAA)n Simple_repeat Simple_repeat 1 29 0 283 309 41 10 chr4 13594895 13594992 -170693670 + MER94 DNA DNA 5 104 -30 425 251 120 24 chr4 13595167 13595334 -170693328 - LTR33A LTR ERVL -15 508 326 248 342 40 27 chr4 13595470 13595619 -170693043 - LTR33 LTR ERVL -322 199 49 227 353 90 8 chr4 13597271 13597404 -170691258 + MIR3 SINE MIR 55 198 -10 237 65 0 0 chr4 13597427 13597455 -170691207 + (TG)n Simple_repeat Simple_repeat 1 59 0 237 65 0 0 chr4 13597455 13597486 -170691176 + (TG)n Simple_repeat Simple_repeat 2 32 0 890 212 35 69 chr4 13597497 13597785 -170690877 + L1MD2 LINE L1 6072 6349 -10 1108 246 78 89 chr4 13597789 13598640 -170690022 + L1M4 LINE L1 4255 5095 -1051 213 65 0 0 chr4 13598660 13598691 -170689971 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1902 202 28 4 chr4 13598862 13599323 -170689339 + L1 LINE L1 4021 4492 -1654 862 355 27 23 chr4 13599338 13599778 -170688884 + L1M3a LINE L1 11 452 -5503 233 382 42 0 chr4 13599907 13600051 -170688611 + L1M3a LINE L1 305 454 -5501 233 325 40 16 chr4 13600510 13600636 -170688026 + L1M3a LINE L1 547 675 -5280 278 368 28 0 chr4 13600653 13600797 -170687865 + L1M3a LINE L1 552 699 -5256 1531 290 70 34 chr4 13600940 13602483 -170686179 + L1MA7 LINE L1 245 1591 -4443 1097 241 122 6 chr4 13602483 13602835 -170685827 + MSTD LTR MaLR 4 396 0 1531 290 70 34 chr4 13602835 13603658 -170685004 + L1MA7 LINE L1 1591 2384 -3650 890 258 0 26 chr4 13603673 13603906 -170684756 - MER46A DNA MER2_type -9 227 1 1963 265 36 8 chr4 13603907 13604519 -170684143 + L1MA7 LINE L1 2384 3012 -3022 * 9220 136 38 10 chr4 13604513 13605954 -170682708 + THE1C-int LTR MaLR 99 1579 -1 1781 176 24 21 chr4 13605955 13606329 -170682333 + THE1C LTR MaLR 1 375 0 630 242 6 0 chr4 13606340 13606518 -170682144 + L1MA7 LINE L1 3068 3246 -2788 2867 136 64 50 chr4 13606518 13606963 -170681699 + LTR24C LTR ERV1 1 459 -176 2226 100 17 0 chr4 13606963 13607262 -170681400 + AluSp SINE Alu 1 304 -9 2867 136 64 50 chr4 13607262 13607441 -170681221 + LTR24C LTR ERV1 459 634 -1 738 230 19 69 chr4 13607442 13607700 -170680962 + L1MA7 LINE L1 3302 3546 -2488 3594 99 55 33 chr4 13607700 13608666 -170679996 - MER11A LTR ERVK 0 1266 1 5416 220 37 15 chr4 13608666 13610175 -170678487 + L1MA7 LINE L1 3541 5174 -860 1262 200 34 0 chr4 13610177 13610412 -170678250 - MSTB1 LTR MaLR 0 432 190 1329 165 39 16 chr4 13610429 13610684 -170677978 - MSTB1 LTR MaLR -171 261 1 5329 223 65 87 chr4 13610684 13612031 -170676631 - MSTB1-int LTR MaLR 0 1651 346 1781 73 13 4 chr4 13612031 13612265 -170676397 - AluY SINE Alu -13 298 63 5329 223 65 87 chr4 13612265 13612600 -170676062 - MSTB1-int LTR MaLR -1305 346 5 2111 157 89 10 chr4 13612609 13613004 -170675658 - MSTB1 LTR MaLR -6 426 1 4314 208 24 14 chr4 13613005 13614002 -170674660 + L1MA7 LINE L1 5173 6179 0 3341 214 31 41 chr4 13614018 13614296 -170674366 + L1MB2 LINE L1 4477 4756 -1415 1417 257 16 13 chr4 13614296 13614669 -170673993 + MLT1A2 LTR MaLR 1 374 0 3341 214 31 41 chr4 13614669 13615560 -170673102 + L1MB2 LINE L1 4756 5654 -517 2447 62 10 3 chr4 13615560 13615864 -170672798 + AluY SINE Alu 1 306 -5 3341 214 31 41 chr4 13615864 13616379 -170672283 + L1MB2 LINE L1 5654 6119 -52 2075 135 0 0 chr4 13616379 13616675 -170671987 + AluSq SINE Alu 1 296 -17 3341 214 31 41 chr4 13616675 13616728 -170671934 + L1MB2 LINE L1 6119 6171 0 523 231 55 41 chr4 13616721 13617005 -170671657 + L1ME LINE L1 5177 5466 -698 * 205 329 208 7 chr4 13617529 13617678 -170670984 - MIR SINE MIR -32 230 52 2926 201 131 1 chr4 13618264 13619011 -170669651 - L1MB7 LINE L1 -19 6165 5322 1523 210 31 42 chr4 13619018 13619403 -170669259 - L1MB5 LINE L1 -13 6161 5781 453 286 0 6 chr4 13619503 13619678 -170668984 - L1MB7 LINE L1 -873 5273 5100 1649 264 93 26 chr4 13619693 13620459 -170668203 - L1MB7 LINE L1 -1152 4994 4178 244 198 12 25 chr4 13620495 13620576 -170668086 + CT-rich Low_complexity Low_complexity 1 80 0 203 325 25 38 chr4 13621241 13621321 -170667341 - MIR3 SINE MIR -6 202 124 21 0 0 0 chr4 13622150 13622171 -170666491 + AT_rich Low_complexity Low_complexity 1 21 0 366 304 224 34 chr4 13622472 13623055 -170665607 + L2 LINE L2 2587 3283 -30 2050 126 13 13 chr4 13623073 13623391 -170665271 + THE1C LTR MaLR 58 375 0 1600 166 62 3 chr4 13623513 13623803 -170664859 - AluSx SINE Alu -5 307 1 221 214 29 0 chr4 13623973 13624043 -170664619 + (TA)n Simple_repeat Simple_repeat 1 72 0 389 93 0 0 chr4 13624154 13624208 -170664454 + MLT2D LTR ERVL 1 54 -360 28 29 0 0 chr4 13624208 13624243 -170664419 + AT_rich Low_complexity Low_complexity 1 35 0 229 212 0 0 chr4 13624258 13624324 -170664338 - L1MC4 LINE L1 -1340 6702 6637 873 173 97 0 chr4 13624427 13624612 -170664050 - MLT2D LTR ERVL -211 203 1 22 35 0 0 chr4 13625141 13625170 -170663492 + AT_rich Low_complexity Low_complexity 1 29 0 1258 222 21 31 chr4 13626021 13626404 -170662258 - Charlie4a DNA MER1_type -54 454 76 22 0 0 0 chr4 13626404 13626426 -170662236 + AT_rich Low_complexity Low_complexity 1 22 0 2903 278 54 48 chr4 13626542 13628641 -170660021 + L1M4c LINE L1 1 1799 -4411 303 323 70 21 chr4 13628669 13628763 -170659899 + L1M4c LINE L1 1831 1919 -4293 2159 127 0 0 chr4 13628763 13629070 -170659592 + AluSc SINE Alu 1 307 -2 303 323 70 21 chr4 13629070 13629161 -170659501 + L1M4c LINE L1 1919 2025 -4187 485 316 7 7 chr4 13629223 13629362 -170659300 + L2 LINE L2 3175 3313 0 272 358 37 47 chr4 13629371 13629670 -170658992 - L2 LINE L2 -710 2604 2309 303 192 0 0 chr4 13629710 13629788 -170658874 + GA-rich Low_complexity Low_complexity 1 78 0 284 375 69 0 chr4 13630011 13630171 -170658491 - L2 LINE L2 -1285 2029 1859 7293 43 0 2 chr4 13630444 13631821 -170656841 + L1PA4 LINE L1 4778 6153 -2 272 315 101 22 chr4 13632275 13632453 -170656209 + L2 LINE L2 3112 3303 -10 244 308 20 25 chr4 13632740 13632938 -170655724 + L1M4c LINE L1 3348 3544 -2666 492 324 68 56 chr4 13634115 13634763 -170653899 + L1M4 LINE L1 3295 3950 -2196 189 333 75 21 chr4 13634901 13634994 -170653668 + MIR SINE MIR 18 115 -147 2539 65 3 0 chr4 13635490 13635799 -170652863 - AluY SINE Alu -1 310 1 330 316 11 0 chr4 13635826 13635921 -170652741 - MIR SINE MIR -73 135 40 1798 212 64 25 chr4 13636328 13636767 -170651895 + MLT1C LTR MaLR 12 467 0 2080 113 0 0 chr4 13637308 13637582 -170651080 - AluSq SINE Alu -17 296 23 205 327 18 62 chr4 13637621 13637734 -170650928 - L2 LINE L2 -502 2812 2705 669 131 11 148 chr4 13637869 13638052 -170650610 - AluJb SINE Alu -1 311 154 34 65 0 0 chr4 13638541 13638603 -170650059 + AT_rich Low_complexity Low_complexity 1 62 0 523 343 121 41 chr4 13638715 13639030 -170649632 + LTR16C LTR ERVL 128 467 -24 488 233 72 76 chr4 13639195 13639457 -170649205 - L1ME3A LINE L1 -230 5940 5680 287 206 29 15 chr4 13639548 13639616 -170649046 - MLT1I LTR MaLR -271 138 70 2165 105 10 0 chr4 13639845 13640140 -170648522 - AluSg SINE Alu -12 298 1 21 0 0 0 chr4 13640180 13640201 -170648461 + AT_rich Low_complexity Low_complexity 1 21 0 261 0 0 0 chr4 13640240 13640269 -170648393 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 239 330 79 32 chr4 13640645 13640924 -170647738 + L1MEd LINE L1 569 860 -5259 202 314 101 44 chr4 13641832 13641991 -170646671 - MIR SINE MIR -1 261 94 426 156 0 0 chr4 13642022 13642099 -170646563 - L1PA16 LINE L1 -4 6162 6086 22 0 0 0 chr4 13642270 13642292 -170646370 + AT_rich Low_complexity Low_complexity 1 22 0 206 161 0 36 chr4 13642720 13642776 -170645886 + (CATA)n Simple_repeat Simple_repeat 2 55 0 2274 172 54 5 chr4 13643138 13643544 -170645118 + MSTB LTR MaLR 1 426 0 8178 178 60 5 chr4 13643544 13645074 -170643588 + MSTB-int LTR MaLR 1 1614 -37 542 189 0 0 chr4 13645091 13645186 -170643476 + MSTB LTR MaLR 1 95 -331 2871 122 24 2 chr4 13645190 13645641 -170643021 + L1PA8 LINE L1 5712 6172 0 275 325 20 60 chr4 13645827 13645978 -170642684 + MIR SINE MIR 114 258 -4 180 0 0 0 chr4 13646335 13646355 -170642307 + (T)n Simple_repeat Simple_repeat 1 20 0 259 344 0 0 chr4 13646740 13646830 -170641832 + MIR SINE MIR 118 207 -55 1753 260 59 36 chr4 13646942 13647572 -170641090 - L1MC4 LINE L1 -140 7902 7259 1261 255 67 36 chr4 13647581 13648133 -170640529 - L1MC4 LINE L1 -809 6999 6452 1789 188 8 44 chr4 13649124 13649914 -170638748 - L1MB1 LINE L1 -532 5636 4880 329 169 17 0 chr4 13649912 13649971 -170638691 + L1MB1 LINE L1 5660 5719 -449 * 630 109 0 0 chr4 13649972 13650064 -170638598 - AluSc SINE Alu -217 92 1 1826 181 48 5 chr4 13650065 13650436 -170638226 + L1MB1 LINE L1 5781 6167 -1 190 372 0 35 chr4 13650458 13650544 -170638118 + MIR SINE MIR 19 101 -107 323 348 57 17 chr4 13650702 13650932 -170637730 + MIR SINE MIR 3 241 -21 243 374 65 23 chr4 13651903 13652117 -170636545 + L2 LINE L2 2384 2606 -708 584 240 35 35 chr4 13652360 13652560 -170636102 + MER3 DNA MER1_type 10 209 0 301 262 56 40 chr4 13652683 13652809 -170635853 + MLT1F1 LTR MaLR 440 567 0 211 338 60 92 chr4 13653056 13653337 -170635325 + L2 LINE L2 3000 3271 -1 216 337 178 0 chr4 13653565 13653666 -170634996 + MIR SINE MIR 20 138 -124 298 250 43 11 chr4 13654327 13654419 -170634243 + MIR SINE MIR 112 206 -56 1714 173 94 0 chr4 13654768 13655086 -170633576 + MER7A DNA MER2_type 1 346 0 7436 31 1 0 chr4 13655555 13656470 -170632192 + L1PA4 LINE L1 5254 6169 0 34 79 0 0 chr4 13656696 13656772 -170631890 + AT_rich Low_complexity Low_complexity 1 76 0 276 339 62 27 chr4 13657770 13657882 -170630780 + L2 LINE L2 3137 3252 -20 196 289 19 0 chr4 13658001 13658053 -170630609 + L2 LINE L2 3246 3298 -15 34 24 0 0 chr4 13658053 13658094 -170630568 + AT_rich Low_complexity Low_complexity 1 41 0 2051 62 106 0 chr4 13658624 13658899 -170629763 - AluY SINE Alu -7 304 1 245 288 0 12 chr4 13659074 13659154 -170629508 + (TA)n Simple_repeat Simple_repeat 2 80 0 231 36 0 0 chr4 13659154 13659182 -170629480 + (CA)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr4 13659845 13659866 -170628796 + AT_rich Low_complexity Low_complexity 1 21 0 1709 164 0 41 chr4 13659959 13660251 -170628411 - AluJb SINE Alu -30 282 3 2628 57 40 6 chr4 13660551 13660901 -170627761 + L1PA8 LINE L1 5810 6171 -1 431 139 0 13 chr4 13661156 13661235 -170627427 + (CA)n Simple_repeat Simple_repeat 2 79 0 515 293 44 68 chr4 13661473 13661678 -170626984 + LTR16C LTR ERVL 167 366 -125 * 1408 199 46 69 chr4 13661668 13661867 -170626795 - MLT1B LTR MaLR -6 384 197 441 0 0 0 chr4 13661867 13661916 -170626746 + (CA)n Simple_repeat Simple_repeat 2 50 0 1408 199 46 69 chr4 13661916 13662108 -170626554 - MLT1B LTR MaLR -193 197 2 209 219 0 0 chr4 13663045 13663086 -170625576 + MIR SINE MIR 99 139 -69 1148 266 7 3 chr4 13663220 13663517 -170625145 + L1MD3 LINE L1 7526 7823 -172 493 263 11 6 chr4 13663743 13663922 -170624740 + (TA)n Simple_repeat Simple_repeat 1 180 0 259 200 0 18 chr4 13664267 13664322 -170624340 + MIR SINE MIR 98 151 -57 367 346 39 8 chr4 13665565 13665695 -170622967 + MIR3 SINE MIR 10 143 -65 452 284 105 37 chr4 13665981 13666171 -170622491 - L2 LINE L2 0 3313 3111 224 327 10 20 chr4 13666605 13666706 -170621956 - L2 LINE L2 -4 3309 3210 220 336 0 49 chr4 13667004 13667126 -170621536 + MIR SINE MIR 91 206 -56 850 299 107 10 chr4 13667725 13668116 -170620546 - LTR16C LTR ERVL 0 491 63 7448 31 11 0 chr4 13668180 13669302 -170619360 - L1PA4 LINE L1 -5 6150 5025 473 296 19 31 chr4 13669302 13669461 -170619201 - MIR SINE MIR -93 169 13 222 37 0 0 chr4 13670771 13670798 -170617864 + (CA)n Simple_repeat Simple_repeat 2 28 0 210 328 43 35 chr4 13671181 13671297 -170617365 - L2 LINE L2 -23 3290 3174 341 325 78 7 chr4 13671648 13671802 -170616860 + MIR SINE MIR 59 223 -39 2478 106 11 16 chr4 13671998 13672375 -170616287 - THE1C LTR MaLR 0 375 1 316 185 37 19 chr4 13672391 13672499 -170616163 + (TA)n Simple_repeat Simple_repeat 1 110 0 277 240 7 52 chr4 13672502 13672656 -170616006 + A-rich Low_complexity Low_complexity 6 152 0 885 135 44 1 chr4 13672656 13672811 -170615851 - L1MA3 LINE L1 -21 6270 6109 2357 234 29 27 chr4 13672936 13673497 -170615165 - MER68 LTR ERV1 0 562 1 1669 196 40 14 chr4 13673943 13674290 -170614372 + MLT1A1 LTR MaLR 10 365 0 393 246 57 41 chr4 13674462 13674584 -170614078 - L2 LINE L2 -3 3310 3187 201 324 42 0 chr4 13674604 13674675 -170613987 - L3 LINE CR1 -881 696 623 361 315 35 56 chr4 13675028 13675225 -170613437 - L3 LINE CR1 -1368 209 17 2154 99 6 16 chr4 13675328 13675641 -170613021 - AluSg SINE Alu 0 310 1 457 298 30 0 chr4 13676221 13676352 -170612310 + MIR3 SINE MIR 20 154 -54 26 0 0 0 chr4 13676939 13676965 -170611697 + AT_rich Low_complexity Low_complexity 1 26 0 5023 172 45 22 chr4 13677912 13678398 -170610264 - L1MA4 LINE L1 0 6300 5827 2355 131 14 3 chr4 13678398 13678758 -170609904 + THE1B LTR MaLR 1 364 0 5023 172 45 22 chr4 13678758 13680237 -170608425 - L1MA4 LINE L1 -473 5827 4305 272 229 48 12 chr4 13680268 13680351 -170608311 + L1ME LINE L1 5529 5614 -507 271 234 204 61 chr4 13680555 13680786 -170607876 - ORSL DNA AcHobo 0 275 12 899 367 83 0 chr4 13681162 13681622 -170607040 - MLT1G LTR MaLR -2 588 91 299 271 82 86 chr4 13681730 13681955 -170606707 - MLT1G-int LTR MaLR -6 1365 1141 207 0 0 0 chr4 13681955 13681978 -170606684 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 360 0 0 0 chr4 13681977 13682017 -170606645 + (CA)n Simple_repeat Simple_repeat 1 40 0 299 271 82 86 chr4 13681978 13682071 -170606591 - MLT1G-int LTR MaLR -230 1141 1087 479 211 114 53 chr4 13682380 13682494 -170606168 + FLAM_C SINE Alu 1 121 -22 219 69 0 0 chr4 13682494 13682523 -170606139 + (TA)n Simple_repeat Simple_repeat 1 29 0 25218 92 12 35 chr4 13682853 13686739 -170601923 + L1P LINE L1 1550 5347 -799 1093 57 7 0 chr4 13686741 13686882 -170601780 + L1PA7 LINE L1 6008 6149 -5 3416 246 52 21 chr4 13686889 13688146 -170600516 + L1MA9 LINE L1 2260 3555 -2591 3448 220 59 12 chr4 13688149 13689155 -170599507 + L1MA9 LINE L1 4407 5485 -827 4020 136 26 80 chr4 13689155 13689984 -170598678 + LTR1 LTR ERV1 1 785 0 3448 220 59 12 chr4 13689984 13690253 -170598409 + L1MA9 LINE L1 5485 5740 -572 422 33 0 33 chr4 13690259 13690320 -170598342 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 988 269 13 16 chr4 13690341 13690650 -170598012 - L1 LINE L1 -2170 3976 3669 655 144 35 11 chr4 13690650 13690824 -170597838 + (TA)n Simple_repeat Simple_repeat 2 179 0 1513 243 40 28 chr4 13690837 13691336 -170597326 + L1MA9 LINE L1 5770 6274 -38 211 310 20 40 chr4 13691548 13691648 -170597014 + L2 LINE L2 3216 3313 0 290 286 168 6 chr4 13691982 13692143 -170596519 - LTR16C LTR ERVL -8 483 297 503 240 152 54 chr4 13692970 13693013 -170595649 + MER58A DNA MER1_type 1 38 -2382 2244 112 0 3 chr4 13693013 13693316 -170595346 + AluSq SINE Alu 1 302 -11 503 240 152 54 chr4 13693316 13693476 -170595186 + MER58A DNA MER1_type 38 224 0 1750 140 27 10 chr4 13694627 13694919 -170593743 - AluSq SINE Alu -6 307 11 958 121 80 2 chr4 13695119 13695358 -170593304 - MER4E LTR ERV1 0 766 460 1339 98 0 0 chr4 13695359 13695543 -170593119 - MER41B LTR ERV1 0 635 452 191 273 146 36 chr4 13696970 13697080 -170591582 + MIR SINE MIR 32 153 -109 2223 92 0 35 chr4 13697566 13697883 -170590779 + AluSg SINE Alu 1 306 -4 225 0 0 0 chr4 13698540 13698565 -170590097 + (TA)n Simple_repeat Simple_repeat 1 25 0 951 215 82 90 chr4 13699119 13699487 -170589175 - MLT1A1 LTR MaLR 0 365 1 351 0 0 0 chr4 13699657 13699696 -170588966 + (TG)n Simple_repeat Simple_repeat 1 39 0 796 164 82 0 chr4 13700916 13701111 -170587551 - L1P LINE L1 -2877 3269 3059 1971 232 13 2 chr4 13701967 13702364 -170586298 + MER72 LTR ERV1 322 722 0 1644 263 34 27 chr4 13702365 13703043 -170585619 - L1ME1 LINE L1 -292 5874 5193 218 314 14 14 chr4 13704362 13704432 -170584230 + L2 LINE L2 3199 3268 -4 262 269 51 13 chr4 13704434 13704512 -170584150 - MIR3 SINE MIR -46 162 82 279 0 0 0 chr4 13704987 13705018 -170583644 + (T)n Simple_repeat Simple_repeat 1 31 0 277 352 91 30 chr4 13705027 13705257 -170583405 + MLT1K LTR MaLR 59 302 -286 472 271 47 16 chr4 13706039 13706168 -170582494 + LTR16C LTR ERVL 189 321 -170 2032 185 37 32 chr4 13706174 13706724 -170581938 - MLT2A2 LTR ERVL 0 554 1 278 285 101 13 chr4 13708182 13708340 -170580322 - L3 LINE CR1 -309 1268 1097 2312 242 30 20 chr4 13708552 13709156 -170579506 + MLT1E3 LTR MaLR 7 616 -8 408 294 168 9 chr4 13709300 13709514 -170579148 + MIR SINE MIR 1 248 -14 3759 67 6 2 chr4 13709840 13710334 -170578328 - L1PA7 LINE L1 0 6154 5659 2427 60 10 0 chr4 13710334 13710714 -170577948 + L1P3 LINE L1 5199 5581 -573 2657 173 136 25 chr4 13711217 13711871 -170576791 - LTR8A LTR ERV1 0 727 1 2658 113 76 2 chr4 13712239 13712672 -170575990 + MER4C LTR ERV1 1 465 0 437 250 8 23 chr4 13712803 13712931 -170575731 + MER4B LTR ERV1 1 126 -484 3753 90 47 8 chr4 13712943 13713476 -170575186 + MER41A LTR ERV1 1 554 0 23 54 0 0 chr4 13713766 13713803 -170574859 + AT_rich Low_complexity Low_complexity 1 37 0 249 292 28 21 chr4 13713834 13713978 -170574684 + L1ME1 LINE L1 57 201 -6195 378 0 0 0 chr4 13714115 13714157 -170574505 + (CA)n Simple_repeat Simple_repeat 2 43 0 326 304 63 0 chr4 13714507 13714665 -170573997 + L1ME1 LINE L1 776 943 -5453 205 109 36 36 chr4 13714676 13714731 -170573931 + (TA)n Simple_repeat Simple_repeat 2 56 0 373 264 49 28 chr4 13714750 13714894 -170573768 + L1ME1 LINE L1 1362 1508 -4888 745 232 24 37 chr4 13714915 13715181 -170573481 + MLT2D LTR ERVL 77 337 -77 243 0 0 0 chr4 13715181 13715208 -170573454 + (CA)n Simple_repeat Simple_repeat 1 27 0 604 295 65 21 chr4 13715250 13715633 -170573029 + L1ME1 LINE L1 1532 1931 -4465 295 309 54 12 chr4 13715645 13715813 -170572849 + LTR41 LTR ERVL 13 187 -586 591 282 44 65 chr4 13716121 13716461 -170572201 + HERVL LTR ERVL 1782 2114 -3540 901 289 68 24 chr4 13716462 13717127 -170571535 + L1ME1 LINE L1 3358 4051 -2164 900 195 15 45 chr4 13717269 13717469 -170571193 - MER72 LTR ERV1 -528 194 1 452 253 25 101 chr4 13717469 13717768 -170570894 + L1ME2 LINE L1 5875 6155 -7 1857 258 60 27 chr4 13717779 13718386 -170570276 + L1ME1 LINE L1 5175 5832 -403 2024 150 97 8 chr4 13718386 13718779 -170569883 - MSTA LTR MaLR 0 428 1 1857 258 60 27 chr4 13718779 13719162 -170569500 + L1ME1 LINE L1 5832 6201 -34 1233 217 108 25 chr4 13719271 13719631 -170569031 - MLT1B LTR MaLR 0 390 1 1251 235 93 8 chr4 13719632 13720007 -170568655 - MLT1B-int LTR MaLR -1 1370 964 1296 216 73 6 chr4 13720202 13720559 -170568103 - L1MA7 LINE L1 -8 6283 5903 993 201 86 0 chr4 13720566 13720834 -170567828 + L1M2 LINE L1 5087 5377 -769 295 206 0 0 chr4 13720878 13720941 -170567721 + L1MA8 LINE L1 6207 6269 -22 1279 152 4 16 chr4 13721044 13721287 -170567375 + L1M2 LINE L1 5384 5623 -668 279 0 0 0 chr4 13721309 13721340 -170567322 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1801 239 16 13 chr4 13721393 13721771 -170566891 - MLT1B-int LTR MaLR -485 886 510 1912 178 78 18 chr4 13721771 13722171 -170566491 + MSTB LTR MaLR 1 424 -2 1801 239 16 13 chr4 13722171 13722472 -170566190 - MLT1B-int LTR MaLR -861 510 1 353 202 42 76 chr4 13722472 13722591 -170566071 - MLT2B1 LTR ERVL 0 520 330 180 336 58 0 chr4 13722633 13722737 -170565925 + MIR SINE MIR 147 256 -6 242 182 0 0 chr4 13724316 13724360 -170564302 - MLT2C2 LTR ERVL 0 464 421 931 32 16 0 chr4 13724361 13724484 -170564178 + (TAGA)n Simple_repeat Simple_repeat 2 126 0 1515 216 20 0 chr4 13724484 13724827 -170563835 - MER47A DNA MER2_type -6 360 11 180 152 0 0 chr4 13724991 13725024 -170563638 + CT-rich Low_complexity Low_complexity 4 36 0 1282 65 0 0 chr4 13725076 13725245 -170563417 - L1PA4 LINE L1 0 6155 5987 1675 33 0 0 chr4 13725245 13725455 -170563207 + L1PA4 LINE L1 5755 5964 -191 23 0 0 0 chr4 13725492 13725515 -170563147 + AT_rich Low_complexity Low_complexity 1 23 0 2058 261 50 30 chr4 13725646 13725769 -170562893 - L1ME1 LINE L1 -4 6162 6043 309 51 0 0 chr4 13725769 13725808 -170562854 + (CA)n Simple_repeat Simple_repeat 1 39 0 2058 261 50 30 chr4 13725808 13726540 -170562122 - L1ME1 LINE L1 -123 6043 5290 962 285 87 30 chr4 13726668 13727142 -170561520 + MLT1J LTR MaLR 3 503 -8 1644 121 13 86 chr4 13727173 13727486 -170561176 + AluJo SINE Alu 23 312 0 1134 325 12 12 chr4 13730033 13730457 -170558205 - LTR16A LTR ERVL 0 450 27 594 261 38 52 chr4 13730872 13731083 -170557579 - MIR SINE MIR -2 260 53 310 289 35 28 chr4 13731141 13731283 -170557379 + MLT1H LTR MaLR 12 154 -395 2424 77 0 3 chr4 13731323 13731634 -170557028 - AluY SINE Alu 0 311 2 25 0 0 0 chr4 13732471 13732496 -170556166 + AT_rich Low_complexity Low_complexity 1 25 0 28 0 0 0 chr4 13732729 13732757 -170555905 + AT_rich Low_complexity Low_complexity 1 28 0 2220 122 6 14 chr4 13732966 13733310 -170555352 - MER1A DNA MER1_type 0 529 189 3512 75 135 170 chr4 13733313 13734274 -170554388 - pTR5 LTR ERV1 0 2438 6 769 185 43 37 chr4 13734304 13734466 -170554196 - MER1A DNA MER1_type -331 196 34 1017 236 9 0 chr4 13734716 13734936 -170553726 - MER58A DNA MER1_type 0 224 3 2147 139 0 0 chr4 13734970 13735279 -170553383 + AluSx SINE Alu 1 309 -3 1625 216 0 0 chr4 13735935 13736217 -170552445 - AluJo SINE Alu -30 282 1 1754 229 79 8 chr4 13736356 13736824 -170551838 - MLT1D LTR MaLR -2 503 3 310 352 20 108 chr4 13736846 13737244 -170551418 + L2 LINE L2 2870 3232 -40 22 56 0 0 chr4 13737273 13737309 -170551353 + AT_rich Low_complexity Low_complexity 1 36 0 278 212 29 123 chr4 13737718 13737888 -170550774 - MLT1L LTR MaLR -221 394 241 446 179 152 13 chr4 13737912 13738063 -170550599 + MER53 DNA DNA 11 182 -7 286 309 121 12 chr4 13738506 13738671 -170549991 + MIR SINE MIR 10 192 -70 446 75 15 0 chr4 13738808 13738875 -170549787 + (TG)n Simple_repeat Simple_repeat 1 68 0 1331 208 53 129 chr4 13738877 13739405 -170549257 - MLT2B3 LTR ERVL -46 508 21 1299 297 81 72 chr4 13739550 13740489 -170548173 + L2 LINE L2 2367 3304 -9 188 371 79 0 chr4 13740549 13740638 -170548024 - MIR SINE MIR -2 260 165 636 328 8 45 chr4 13740692 13740960 -170547702 + MIR SINE MIR 5 262 0 419 273 121 0 chr4 13740966 13741098 -170547564 - MIR SINE MIR -106 156 9 592 345 86 4 chr4 13741739 13741994 -170546668 + L2 LINE L2 2576 2851 -463 391 241 117 29 chr4 13742043 13742180 -170546482 - MIR SINE MIR -105 157 9 243 384 36 14 chr4 13742269 13742407 -170546255 + L2 LINE L2 2911 3051 -262 204 333 23 23 chr4 13742733 13742820 -170545842 - MIR SINE MIR -16 246 160 1173 214 77 14 chr4 13742820 13743105 -170545557 + AluJb SINE Alu 6 308 -4 271 314 76 0 chr4 13743124 13743229 -170545433 - MIR SINE MIR -64 144 32 191 178 0 110 chr4 13743458 13743531 -170545131 - L2 LINE L2 -560 2754 2690 23 0 0 0 chr4 13743787 13743810 -170544852 + AT_rich Low_complexity Low_complexity 1 23 0 269 356 19 0 chr4 13744030 13744134 -170544528 + MIR SINE MIR 20 125 -137 194 263 53 0 chr4 13744170 13744227 -170544435 + MIR SINE MIR 203 262 0 216 0 0 0 chr4 13744329 13744353 -170544309 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 413 284 52 22 chr4 13744644 13744778 -170543884 + MIR SINE MIR 16 153 -109 376 281 42 42 chr4 13745722 13745914 -170542748 + L2 LINE L2 3070 3261 -52 229 261 76 51 chr4 13746458 13746590 -170542072 + LTR33A LTR ERVL 358 496 -27 180 0 0 0 chr4 13746590 13746610 -170542052 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 229 261 76 51 chr4 13746610 13746634 -170542028 + LTR33A LTR ERVL 496 518 -5 222 298 134 68 chr4 13746889 13747181 -170541481 - L2 LINE L2 -459 2855 2545 30 0 0 0 chr4 13747727 13747757 -170540905 + AT_rich Low_complexity Low_complexity 1 30 0 543 305 75 17 chr4 13747882 13748121 -170540541 - MIR SINE MIR 0 262 10 262 309 0 21 chr4 13748200 13748297 -170540365 + MIR SINE MIR 74 168 -94 373 242 47 62 chr4 13749523 13749651 -170539011 - L2 LINE L2 0 3313 3188 774 323 124 68 chr4 13749759 13750526 -170538136 - L2 LINE L2 -356 2958 2149 1525 233 118 29 chr4 13750552 13750986 -170537676 + MLT2B1 LTR ERVL 3 484 -36 204 40 0 0 chr4 13750986 13751011 -170537651 + (TA)n Simple_repeat Simple_repeat 2 26 0 1525 233 118 29 chr4 13751011 13751052 -170537610 + MLT2B1 LTR ERVL 484 520 0 285 315 120 0 chr4 13751058 13751150 -170537512 - MIR SINE MIR -141 121 19 203 224 134 15 chr4 13751490 13751557 -170537105 + L3 LINE CR1 1243 1317 -260 295 357 49 38 chr4 13752303 13752488 -170536174 + MIR SINE MIR 20 206 -56 667 206 44 0 chr4 13752588 13752724 -170535938 - MLT1B LTR MaLR -10 380 239 300 174 14 14 chr4 13752824 13752893 -170535769 - MLT1B LTR MaLR -321 69 1 254 331 0 8 chr4 13753113 13753243 -170535419 + (TG)n Simple_repeat Simple_repeat 2 130 0 1683 162 39 72 chr4 13753475 13753863 -170534799 - THE1C LTR MaLR 0 375 1 9429 136 53 6 chr4 13753863 13755370 -170533292 - THE1C-int LTR MaLR 0 1580 3 1887 166 27 24 chr4 13755372 13755746 -170532916 - THE1C LTR MaLR 0 375 1 381 357 39 26 chr4 13755758 13755912 -170532750 + MER91A DNA MER1_type 1 156 -40 22 0 0 0 chr4 13757342 13757364 -170531298 + AT_rich Low_complexity Low_complexity 1 22 0 747 303 19 0 chr4 13757868 13758079 -170530583 + MER58A DNA MER1_type 10 224 0 278 335 120 11 chr4 13758079 13758270 -170530392 - MIR SINE MIR -46 216 5 597 163 59 20 chr4 13758285 13758438 -170530224 - L1MB8 LINE L1 -6 6241 6083 859 222 61 12 chr4 13758448 13758737 -170529925 - L1MB8 LINE L1 -656 5587 5287 7711 263 54 10 chr4 13758825 13759530 -170529132 - L1MB8 LINE L1 -1101 5114 4442 2309 116 38 30 chr4 13759530 13759902 -170528760 - THE1C LTR MaLR 0 375 1 7711 263 54 10 chr4 13759902 13760197 -170528465 - L1MB8 LINE L1 -1773 4442 4162 360 0 0 0 chr4 13760197 13760237 -170528425 + (TA)n Simple_repeat Simple_repeat 1 40 0 7711 263 54 10 chr4 13760237 13762155 -170526507 - L1MB8 LINE L1 -2053 4162 2102 5845 257 42 43 chr4 13762514 13764912 -170523750 - L1M4c LINE L1 -4436 2702 192 278 354 7 49 chr4 13765696 13765840 -170522822 + MIR3 SINE MIR 57 194 -14 1766 154 13 26 chr4 13765861 13766166 -170522496 + AluSx SINE Alu 2 302 -10 965 167 29 6 chr4 13767059 13767233 -170521429 + MLT1B LTR MaLR 1 178 -212 2096 131 0 13 chr4 13767235 13767547 -170521115 + AluSg SINE Alu 1 308 -2 213 39 0 0 chr4 13767637 13767663 -170520999 + (CA)n Simple_repeat Simple_repeat 2 27 0 301 247 22 22 chr4 13767719 13767808 -170520854 - L1MC4 LINE L1 -1339 6703 6615 316 342 89 20 chr4 13767847 13768049 -170520613 - L1MC4 LINE L1 -2072 5736 5521 197 132 26 0 chr4 13768561 13768599 -170520063 + (TA)n Simple_repeat Simple_repeat 2 40 0 2163 68 0 31 chr4 13769404 13769719 -170518943 - AluY SINE Alu 0 306 1 1551 180 41 0 chr4 13770134 13770429 -170518233 + L1MC1 LINE L1 5500 5806 -527 745 181 16 85 chr4 13770567 13770755 -170517907 + FAM SINE Alu 1 175 0 1994 148 21 0 chr4 13770755 13771087 -170517575 + L1PA16 LINE L1 5676 6014 -152 1621 176 49 43 chr4 13771087 13771456 -170517206 + THE1C LTR MaLR 1 371 -4 9270 129 19 42 chr4 13771462 13773077 -170515585 + THE1C-int LTR MaLR 3 1580 0 1624 177 65 19 chr4 13773077 13773477 -170515185 + THE1C LTR MaLR 1 428 0 749 158 36 0 chr4 13773481 13773620 -170515042 + L1PA16 LINE L1 6014 6157 -9 219 69 0 0 chr4 13773660 13773689 -170514973 + (TA)n Simple_repeat Simple_repeat 1 29 0 2588 187 12 8 chr4 13773699 13774213 -170514449 + L1MC1 LINE L1 5817 6332 -1 988 213 122 3 chr4 13775798 13776117 -170512545 - MER114 LTR ERV -96 552 196 253 261 152 11 chr4 13776198 13776290 -170512372 - MER114 LTR ERV -543 105 1 29 47 0 0 chr4 13776535 13776578 -170512084 + AT_rich Low_complexity Low_complexity 1 43 0 1964 129 21 0 chr4 13776606 13776892 -170511770 + AluSx SINE Alu 1 292 -20 186 319 43 53 chr4 13777211 13777305 -170511357 + MER5A DNA MER1_type 29 121 -68 240 35 0 0 chr4 13778905 13778934 -170509728 + (T)n Simple_repeat Simple_repeat 1 29 0 794 268 6 0 chr4 13780089 13780272 -170508390 - MER58A DNA MER1_type 0 224 41 195 377 41 0 chr4 13780473 13780595 -170508067 + MIR SINE MIR 61 187 -75 690 291 46 12 chr4 13780971 13781212 -170507450 - MIR SINE MIR 0 262 14 258 302 85 9 chr4 13781379 13781485 -170507177 + MIR SINE MIR 54 167 -95 207 133 0 0 chr4 13781649 13781694 -170506968 + (CAAAAA)n Simple_repeat Simple_repeat 2 46 0 1770 106 0 4 chr4 13782210 13782464 -170506198 - L1PA12 LINE L1 -15 6153 5901 211 285 39 69 chr4 13782763 13782893 -170505769 + L2 LINE L2 3188 3313 0 292 252 176 17 chr4 13783106 13783225 -170505437 + MIR SINE MIR 39 176 -86 247 296 37 0 chr4 13783669 13783750 -170504912 + MIR3 SINE MIR 116 199 -9 299 224 0 10 chr4 13785404 13785502 -170503160 + GA-rich Low_complexity Low_complexity 2 98 0 47 73 0 0 chr4 13785677 13785773 -170502889 + AT_rich Low_complexity Low_complexity 1 96 0 236 301 62 106 chr4 13785791 13786017 -170502645 - MIR SINE MIR -27 235 20 4131 151 89 7 chr4 13786188 13786949 -170501713 - LTR1B LTR ERV1 0 826 3 1859 158 58 0 chr4 13788650 13788992 -170499670 - THE1B LTR MaLR -2 362 1 5532 113 1 5 chr4 13788992 13789765 -170498897 - THE1B-int LTR MaLR 0 1580 811 681 173 14 125 chr4 13789765 13789973 -170498689 + MER67B LTR ERV1 40 224 -437 499 289 25 1 chr4 13790114 13790344 -170498318 + MER67A LTR ERV1 273 543 0 452 284 61 6 chr4 13790391 13790554 -170498108 - MIR SINE MIR -62 146 16 234 0 0 0 chr4 13790816 13790842 -170497820 + (CA)n Simple_repeat Simple_repeat 2 27 0 214 288 0 0 chr4 13791218 13791277 -170497385 + T-rich Low_complexity Low_complexity 1 59 0 279 329 134 24 chr4 13791555 13791719 -170496943 + MIR3 SINE MIR 8 189 -19 200 226 0 16 chr4 13792928 13792990 -170495672 + (TAAA)n Simple_repeat Simple_repeat 3 63 0 337 257 176 65 chr4 13792996 13793145 -170495517 - L1MC4a LINE L1 -1900 5908 5777 1515 99 27 5 chr4 13793145 13793368 -170495294 + MER30 DNA MER1_type 3 230 0 337 257 176 65 chr4 13793368 13793479 -170495183 - L1MC4a LINE L1 -2031 5777 5619 31 58 0 0 chr4 13793733 13793785 -170494877 + AT_rich Low_complexity Low_complexity 1 52 0 482 0 17 0 chr4 13794664 13794722 -170493940 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 265 310 102 19 chr4 13794747 13795267 -170493395 - L1MC4a LINE L1 -1860 4286 3724 204 340 21 28 chr4 13795276 13795420 -170493242 + L2 LINE L2 3159 3301 -12 6503 32 6 0 chr4 13795726 13796502 -170492160 - L1PA4 LINE L1 0 6155 5375 3881 30 0 0 chr4 13796503 13796978 -170491684 + L1PA4 LINE L1 4880 5354 -792 2665 73 6 0 chr4 13797225 13797581 -170491081 - L1PA13 LINE L1 -3 6160 5803 2373 80 0 3 chr4 13797584 13797886 -170490776 - AluY SINE Alu -10 301 1 1051 205 63 57 chr4 13797886 13798203 -170490459 - MLT1A2 LTR MaLR -55 319 1 454 269 55 43 chr4 13798452 13798709 -170489953 - L1ME4a LINE L1 -238 5883 5624 192 77 0 0 chr4 13798811 13798837 -170489825 + (A)n Simple_repeat Simple_repeat 1 26 0 205 373 67 0 chr4 13799758 13799833 -170488829 - L2 LINE L2 -55 3217 3138 2107 117 0 0 chr4 13799983 13800299 -170488363 + AluSc SINE Alu 1 316 0 366 264 88 8 chr4 13800454 13800579 -170488083 + L2 LINE L2 3179 3313 0 220 285 99 63 chr4 13802503 13802715 -170485947 - L2 LINE L2 -11 3302 3080 1751 161 3 43 chr4 13802715 13803037 -170485625 - AluJb SINE Alu -3 309 1 214 297 44 22 chr4 13803046 13803137 -170485525 + L3 LINE CR1 804 896 -681 1921 193 28 96 chr4 13803140 13803758 -170484904 + L1MB7 LINE L1 5593 6168 -16 383 245 89 29 chr4 13803897 13804022 -170484640 - FLAM_A SINE Alu -2 131 13 380 315 31 8 chr4 13804703 13804833 -170483829 + MER94 DNA DNA 2 134 0 386 276 23 0 chr4 13804909 13804996 -170483666 + L2 LINE L2 2968 3056 -257 205 318 182 0 chr4 13805048 13805158 -170483504 + L2 LINE L2 3183 3312 -1 1948 187 6 0 chr4 13805370 13805701 -170482961 + MER7A DNA MER2_type 4 334 -12 204 40 0 0 chr4 13806041 13806066 -170482596 + (A)n Simple_repeat Simple_repeat 1 25 0 2105 113 0 7 chr4 13806071 13806364 -170482298 + AluSc SINE Alu 1 291 -18 21 0 0 0 chr4 13806379 13806400 -170482262 + AT_rich Low_complexity Low_complexity 1 21 0 212 77 26 0 chr4 13807430 13807469 -170481193 + (TG)n Simple_repeat Simple_repeat 1 40 0 2131 145 97 8 chr4 13807665 13808058 -170480604 - MSTA LTR MaLR 0 428 1 201 176 0 0 chr4 13809441 13809475 -170479187 + A-rich Low_complexity Low_complexity 1 34 0 377 289 43 75 chr4 13809752 13809939 -170478723 - MIR3 SINE MIR -7 201 21 251 348 130 29 chr4 13810000 13810522 -170478140 - L2 LINE L2 -23 3290 2710 3673 180 36 34 chr4 13810751 13811613 -170477049 - L1MC2 LINE L1 -108 6236 5373 379 364 54 29 chr4 13811688 13811968 -170476694 - L2 LINE L2 0 3272 2986 31 26 0 0 chr4 13812268 13812306 -170476356 + AT_rich Low_complexity Low_complexity 1 38 0 22 56 0 0 chr4 13812367 13812403 -170476259 + AT_rich Low_complexity Low_complexity 1 36 0 339 289 60 48 chr4 13812488 13812737 -170475925 - L1ME4a LINE L1 -295 5826 5575 454 332 108 31 chr4 13812908 13813569 -170475093 + L2 LINE L2 2595 3313 0 497 304 93 78 chr4 13813612 13814585 -170474077 - L1ME4a LINE L1 -755 5391 4404 2522 78 28 8 chr4 13814670 13815028 -170473634 + L1PA8A LINE L1 5762 6126 -5 23 33 0 0 chr4 13815028 13815058 -170473604 + AT_rich Low_complexity Low_complexity 1 30 0 1371 236 85 23 chr4 13818175 13818574 -170470088 - MLT2B1 LTR ERVL -90 430 7 1244 291 103 10 chr4 13818578 13819084 -170469578 + MLT1E2 LTR MaLR 71 623 -3 1693 212 132 42 chr4 13819335 13819777 -170468885 + MLT2B1 LTR ERVL 1 490 -30 441 0 0 0 chr4 13819777 13819826 -170468836 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 1693 212 132 42 chr4 13819826 13819860 -170468802 + MLT2B1 LTR ERVL 490 520 0 22 0 0 0 chr4 13820261 13820283 -170468379 + AT_rich Low_complexity Low_complexity 1 22 0 387 127 0 0 chr4 13820334 13820397 -170468265 + (GGGA)n Simple_repeat Simple_repeat 1 63 0 2577 186 35 2 chr4 13820481 13821031 -170467631 + L1MA4 LINE L1 4706 5273 -873 801 184 29 0 chr4 13821380 13821516 -170467146 + FRAM SINE Alu 1 131 -45 5208 149 10 16 chr4 13821518 13822494 -170466168 + L1MA4 LINE L1 5317 6286 -14 677 281 74 157 chr4 13822626 13823981 -170464681 - L2 LINE L2 -643 2671 1429 1145 201 38 112 chr4 13824538 13824932 -170463730 - MLT1A1 LTR MaLR 0 365 1 854 291 156 44 chr4 13825155 13825988 -170462674 + L2 LINE L2 2339 3313 0 317 332 147 22 chr4 13826842 13827162 -170461500 + L2 LINE L2 2702 3062 -251 217 345 69 28 chr4 13827340 13827485 -170461177 + L2 LINE L2 3162 3312 -1 340 336 25 17 chr4 13827486 13827605 -170461057 - MIR SINE MIR -131 131 12 642 200 97 0 chr4 13828050 13828205 -170460457 + L1MC1 LINE L1 6155 6324 -9 1947 90 4 8 chr4 13828206 13828462 -170460200 + AluY SINE Alu 44 298 -13 2340 60 0 0 chr4 13829718 13830029 -170458633 + AluY SINE Alu 1 311 0 23 0 0 0 chr4 13830568 13830591 -170458071 + AT_rich Low_complexity Low_complexity 1 23 0 39659 40 36 5 chr4 13830779 13836019 -170452643 + L1P LINE L1 2 5403 -743 14611 107 15 17 chr4 13836129 13839065 -170449597 - HERVH LTR ERV1 -4726 2987 1 3054 89 4 30 chr4 13839067 13839527 -170449135 - LTR7 LTR ERV1 -2 448 1 219 298 46 17 chr4 13840312 13840438 -170448224 - MIR SINE MIR -63 145 53 346 246 59 68 chr4 13840651 13840769 -170447893 - MIR SINE MIR -60 202 86 941 198 77 30 chr4 13840894 13841192 -170447470 - L1MC3 LINE L1 -3 7782 7471 1107 189 15 0 chr4 13841193 13841399 -170447263 - L1MC3 LINE L1 -498 7287 7079 481 158 17 0 chr4 13841579 13841699 -170446963 + (TA)n Simple_repeat Simple_repeat 1 122 0 841 167 40 7 chr4 13841717 13841867 -170446795 - MSTB LTR MaLR -58 368 214 2774 267 49 19 chr4 13841874 13843044 -170445618 - L1M4 LINE L1 -1822 4324 3120 198 352 42 0 chr4 13843359 13843430 -170445232 + L2 LINE L2 3234 3307 -6 2093 142 20 6 chr4 13844283 13844629 -170444033 + THE1B LTR MaLR 1 351 -13 231 394 36 16 chr4 13845022 13845215 -170443447 - L2 LINE L2 -182 3090 2894 191 333 0 0 chr4 13845329 13845380 -170443282 + L2 LINE L2 3218 3268 -4 24 0 0 0 chr4 13845680 13845704 -170442958 + AT_rich Low_complexity Low_complexity 1 24 0 1205 218 132 32 chr4 13846003 13846543 -170442119 + MER67B LTR ERV1 43 511 -3 3148 49 0 0 chr4 13846563 13846949 -170441713 - L1PA3 LINE L1 0 6155 5770 2144 38 4 0 chr4 13847012 13847275 -170441387 - L1PA2 LINE L1 0 6155 5892 313 295 25 16 chr4 13847727 13847849 -170440813 - MIR SINE MIR -71 191 69 934 235 124 82 chr4 13847921 13848293 -170440369 + MLT1F1 LTR MaLR 3 409 -158 1677 138 32 21 chr4 13848293 13848628 -170440034 - AluSx SINE Alu 0 338 1 934 235 124 82 chr4 13848628 13848794 -170439868 + MLT1F1 LTR MaLR 409 567 0 858 203 39 0 chr4 13850149 13850356 -170438306 - L1MA6 LINE L1 -19 6281 6067 2089 192 17 19 chr4 13850357 13850825 -170437837 - L1MB5 LINE L1 -50 6124 5658 995 88 15 0 chr4 13850847 13850984 -170437678 - AluSc SINE Alu -6 303 165 21 0 0 0 chr4 13852680 13852701 -170435961 + AT_rich Low_complexity Low_complexity 1 21 0 2037 104 5 5 chr4 13853451 13853810 -170434852 - LTR7 LTR ERV1 -2 448 1 2262 90 48 13 chr4 13853810 13854187 -170434475 - HERVH LTR ERV1 0 7713 7324 1243 138 18 9 chr4 13854187 13854405 -170434257 - HERVH LTR ERV1 -1894 5819 5600 4067 151 0 1 chr4 13854406 13855069 -170433593 - HERVH LTR ERV1 -2564 5149 4488 3053 137 0 6 chr4 13855071 13855576 -170433086 - HERVH LTR ERV1 -3720 3993 3492 521 161 21 0 chr4 13855566 13855659 -170433003 - HERVH LTR ERV1 -4423 3290 3196 * 1669 184 39 91 chr4 13855859 13856298 -170432364 + MSTB1 LTR MaLR 17 432 0 21 0 0 0 chr4 13857050 13857071 -170431591 + AT_rich Low_complexity Low_complexity 1 21 0 615 295 63 0 chr4 13857557 13857747 -170430915 + MER63A DNA MER1_type 9 210 0 285 257 0 37 chr4 13857947 13858056 -170430606 + (TA)n Simple_repeat Simple_repeat 1 105 0 297 253 69 0 chr4 13858080 13858167 -170430495 + L1ME1 LINE L1 6069 6161 -5 240 184 0 0 chr4 13858886 13858935 -170429727 + (TA)n Simple_repeat Simple_repeat 1 49 0 547 297 40 52 chr4 13859185 13859532 -170429130 - MARNA DNA Mariner -101 485 143 30 0 0 0 chr4 13859956 13859986 -170428676 + AT_rich Low_complexity Low_complexity 1 30 0 2105 82 32 4 chr4 13861067 13861346 -170427316 - AluY SINE Alu -24 287 1 1911 134 7 10 chr4 13862319 13862626 -170426036 - AluSq SINE Alu -7 306 1 336 279 0 0 chr4 13863305 13863391 -170425271 + MER33 DNA MER1_type 1 86 -238 513 201 107 60 chr4 13863434 13863668 -170424994 + MER33 DNA MER1_type 118 362 -1 265 354 0 12 chr4 13863878 13863960 -170424702 - L2 LINE L2 -1 3271 3191 1379 170 11 26 chr4 13865214 13865239 -170423423 - L1PA10 LINE L1 -307 5861 5837 2552 151 7 0 chr4 13865239 13865671 -170422991 - L1PA13 LINE L1 0 6163 5729 1379 170 11 26 chr4 13865671 13865916 -170422746 - L1PA10 LINE L1 -331 5837 5595 1295 132 5 0 chr4 13866017 13866206 -170422456 - AluYb8 SINE Alu -128 190 1 1968 184 49 3 chr4 13867099 13867464 -170421198 + MLT1B LTR MaLR 9 390 0 2146 83 0 10 chr4 13868172 13868461 -170420201 + AluY SINE Alu 1 286 -25 706 271 17 64 chr4 13868764 13868852 -170419810 - MIR SINE MIR -34 228 137 1916 124 0 79 chr4 13868852 13869167 -170419495 + AluSx SINE Alu 7 296 -16 706 271 17 64 chr4 13869167 13869314 -170419348 - MIR SINE MIR -125 137 4 307 317 16 16 chr4 13869905 13870028 -170418634 + MIR SINE MIR 140 262 0 201 74 0 0 chr4 13870911 13870938 -170417724 + (T)n Simple_repeat Simple_repeat 1 27 0 1933 147 68 8 chr4 13871537 13871890 -170416772 - THE1C LTR MaLR -1 374 1 270 0 0 0 chr4 13874020 13874050 -170414612 + (TG)n Simple_repeat Simple_repeat 1 30 0 690 272 31 26 chr4 13874654 13874882 -170413780 + MIR SINE MIR 30 258 -4 3253 163 0 11 chr4 13874979 13875512 -170413150 + MER1A DNA MER1_type 1 527 0 23 0 0 0 chr4 13876435 13876458 -170412204 + AT_rich Low_complexity Low_complexity 1 23 0 1920 162 21 29 chr4 13877010 13877350 -170411312 - MER1B DNA MER1_type 0 337 1 199 283 0 0 chr4 13878417 13878463 -170410199 - MIR SINE MIR -124 138 93 27 0 0 0 chr4 13879358 13879385 -170409277 + AT_rich Low_complexity Low_complexity 1 27 0 210 71 0 0 chr4 13880029 13880057 -170408605 + (T)n Simple_repeat Simple_repeat 1 28 0 1148 252 22 31 chr4 13880202 13880523 -170408139 + MLT1C LTR MaLR 1 318 -149 1684 226 32 25 chr4 13880523 13880997 -170407665 + L1MA9 LINE L1 5799 6275 -37 214 151 38 38 chr4 13882237 13882290 -170406372 + T-rich Low_complexity Low_complexity 3 55 0 21 0 0 0 chr4 13882330 13882351 -170406311 + AT_rich Low_complexity Low_complexity 1 21 0 3621 207 43 34 chr4 13882401 13883886 -170404776 + L1MA10 LINE L1 4819 6321 -13 270 179 0 0 chr4 13883895 13883951 -170404711 + GA-rich Low_complexity Low_complexity 3 58 0 218 176 20 0 chr4 13884580 13884631 -170404031 + (TA)n Simple_repeat Simple_repeat 2 53 0 857 271 56 68 chr4 13885280 13885675 -170402987 + L2 LINE L2 2916 3305 -8 186 282 89 32 chr4 13885677 13885801 -170402861 - MIR SINE MIR -58 204 74 201 391 109 8 chr4 13885873 13886121 -170402541 + L3 LINE CR1 1277 1549 -28 229 303 70 51 chr4 13886369 13886509 -170402153 - MIR SINE MIR -65 143 5 303 262 82 31 chr4 13887119 13887266 -170401396 - MIR SINE MIR -53 209 54 994 268 51 49 chr4 13890436 13890924 -170397738 - MLT1E3 LTR MaLR 0 624 136 315 334 46 59 chr4 13890925 13891248 -170397414 - L1M4 LINE L1 -1932 4214 3896 319 247 165 99 chr4 13891564 13891688 -170396974 - L1M4 LINE L1 -2688 3458 3344 476 0 0 0 chr4 13891688 13891745 -170396917 - L1PA3 LINE L1 -3 6152 6096 319 247 165 99 chr4 13891745 13891794 -170396868 - L1M4 LINE L1 -2802 3344 3300 2285 80 0 7 chr4 13891794 13892080 -170396582 - AluY SINE Alu -9 302 19 319 247 165 99 chr4 13892080 13892257 -170396405 - L1M4 LINE L1 -2846 3300 3084 312 188 0 0 chr4 13892334 13892398 -170396264 + CT-rich Low_complexity Low_complexity 3 66 0 341 317 16 8 chr4 13892457 13892580 -170396082 - L1M4 LINE L1 -3161 2985 2862 215 260 13 26 chr4 13892730 13892759 -170395903 + CT-rich Low_complexity Low_complexity 1 29 -47 2429 160 7 47 chr4 13892759 13893203 -170395459 - MSTB LTR MaLR 0 426 1 215 260 13 26 chr4 13893203 13893250 -170395412 + CT-rich Low_complexity Low_complexity 29 76 0 1918 340 52 11 chr4 13893408 13894156 -170394506 + L1MA7 LINE L1 1430 2208 -5288 2011 258 84 26 chr4 13894174 13894513 -170394149 + L1MA7 LINE L1 2260 2578 -4987 1998 175 0 0 chr4 13894513 13894821 -170393841 + AluSx SINE Alu 1 308 -4 2011 258 84 26 chr4 13894821 13896196 -170392466 + L1MA7 LINE L1 2578 3732 -3833 * 3842 196 41 13 chr4 13896181 13897526 -170391136 + L1MA7 LINE L1 6199 7699 -11 27 96 0 0 chr4 13897603 13897686 -170390976 + AT_rich Low_complexity Low_complexity 1 83 0 382 382 36 5 chr4 13897737 13897957 -170390705 + MIR SINE MIR 15 241 -21 250 362 5 55 chr4 13898050 13898249 -170390413 - MIR SINE MIR -71 191 3 258 32 0 0 chr4 13898643 13898674 -170389988 + (CA)n Simple_repeat Simple_repeat 2 32 0 728 283 15 20 chr4 13899061 13899259 -170389403 + MER58A DNA MER1_type 9 205 -19 197 333 0 0 chr4 13899278 13899332 -170389330 - MIR SINE MIR -74 134 81 215 237 118 59 chr4 13900082 13900217 -170388445 + MIR SINE MIR 64 206 -56 324 70 0 0 chr4 13900271 13900314 -170388348 + (ATG)n Simple_repeat Simple_repeat 1 43 0 272 269 26 0 chr4 13900352 13900430 -170388232 + MER94 DNA DNA 39 118 -16 1606 35 0 20 chr4 13900730 13900930 -170387732 - AluY SINE Alu -12 299 104 312 244 0 0 chr4 13901252 13901342 -170387320 + GA-rich Low_complexity Low_complexity 5 94 0 180 0 0 0 chr4 13902119 13902139 -170386523 + (T)n Simple_repeat Simple_repeat 1 20 0 183 288 195 34 chr4 13902440 13902558 -170386104 + MIR SINE MIR 20 156 -106 186 103 0 0 chr4 13903701 13903730 -170384932 + (TA)n Simple_repeat Simple_repeat 2 30 0 377 243 5 146 chr4 13904899 13905084 -170383578 + LTR67 LTR ERVL 353 511 -46 1534 199 11 72 chr4 13905097 13905474 -170383188 + MLT1A1 LTR MaLR 1 354 -11 334 240 104 32 chr4 13905629 13905783 -170382879 - L2 LINE L2 -6 3307 3143 714 275 51 18 chr4 13906017 13906351 -170382311 - L1M4 LINE L1 -2216 3930 3586 847 104 0 0 chr4 13906604 13906729 -170381933 + AluY SINE Alu 187 311 0 1727 194 41 19 chr4 13907077 13907444 -170381218 - THE1C LTR MaLR 0 375 1 9211 145 12 35 chr4 13907444 13909057 -170379605 - THE1C-int LTR MaLR 0 1580 4 1714 182 40 37 chr4 13909060 13909434 -170379228 - THE1C LTR MaLR 0 375 1 323 327 67 0 chr4 13909587 13909691 -170378971 - MER81 DNA DNA -3 111 1 1321 158 36 9 chr4 13909713 13909935 -170378727 - MER30 DNA MER1_type 0 230 3 183 80 0 0 chr4 13910406 13910431 -170378231 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 228 287 57 100 chr4 13910447 13910685 -170377977 + MIR SINE MIR 9 236 -26 21 0 0 0 chr4 13911002 13911023 -170377639 + AT_rich Low_complexity Low_complexity 1 21 0 1497 204 22 44 chr4 13911367 13911729 -170376933 + MLT1A1 LTR MaLR 12 365 0 303 318 13 54 chr4 13911823 13911976 -170376686 + MIR SINE MIR 47 146 -62 397 234 39 55 chr4 13912136 13912264 -170376398 + MIR SINE MIR 31 156 -106 252 342 0 8 chr4 13912296 13912413 -170376249 + MIR SINE MIR 146 261 -1 23 0 0 0 chr4 13912470 13912493 -170376169 + AT_rich Low_complexity Low_complexity 1 23 0 210 250 0 0 chr4 13912595 13912699 -170375963 + (CA)n Simple_repeat Simple_repeat 1 104 0 202 305 17 17 chr4 13912882 13912941 -170375721 + MIR SINE MIR 95 153 -55 * 214 214 0 0 chr4 13912936 13912978 -170375684 + L2 LINE L2 3267 3308 -5 274 320 72 24 chr4 13913240 13913365 -170375297 - L2 LINE L2 0 3272 3142 225 184 0 0 chr4 13913629 13913667 -170374995 - MLT1I LTR MaLR -274 135 98 254 302 0 0 chr4 13913981 13914044 -170374618 + L2 LINE L2 3210 3272 0 287 292 138 23 chr4 13914165 13914295 -170374367 + L2 LINE L2 3118 3262 -10 426 342 53 25 chr4 13914508 13915087 -170373575 + L1ME2 LINE L1 5263 5867 -297 215 323 132 32 chr4 13915864 13916093 -170372569 + MIR3 SINE MIR 5 262 0 21 0 0 0 chr4 13917536 13917557 -170371105 + AT_rich Low_complexity Low_complexity 1 21 0 1783 162 0 4 chr4 13917563 13917862 -170370800 + AluSx SINE Alu 14 311 0 990 249 69 69 chr4 13917956 13918346 -170370316 + MLT1B LTR MaLR 1 390 0 2260 240 47 39 chr4 13918347 13919113 -170369549 - L1ME2 LINE L1 -22 6142 5371 808 290 116 28 chr4 13919129 13919973 -170368689 - L1ME2 LINE L1 -845 5301 4384 2198 273 89 34 chr4 13920096 13921398 -170367264 - L1ME2 LINE L1 -2098 4048 2675 33 0 0 0 chr4 13921776 13921809 -170366853 + AT_rich Low_complexity Low_complexity 1 33 0 317 325 77 36 chr4 13922071 13922265 -170366397 - MIR SINE MIR 0 262 61 576 43 0 0 chr4 13922779 13922848 -170365814 - LTR12 LTR ERV1 0 714 646 337 231 11 0 chr4 13922851 13922942 -170365720 + LTR30 LTR ERV1 552 643 -79 679 122 9 9 chr4 13922944 13923059 -170365603 + LTR12 LTR ERV1 482 596 -118 211 351 46 30 chr4 13923178 13923309 -170365353 + MIR SINE MIR 16 148 -114 1177 258 185 6 chr4 13923804 13924291 -170364371 - MLT1F1 LTR MaLR 0 567 1 798 264 95 20 chr4 13924544 13924892 -170363770 - L1ME4a LINE L1 -15 6106 5733 599 200 32 0 chr4 13925380 13925505 -170363157 + MER94 DNA DNA 1 129 -5 289 185 41 14 chr4 13925753 13925899 -170362763 + (TA)n Simple_repeat Simple_repeat 2 151 0 659 355 47 17 chr4 13926309 13926608 -170362054 + L1MA6 LINE L1 395 702 -6147 3474 245 50 46 chr4 13926836 13928391 -170360271 + L1MA6 LINE L1 1345 2892 -3956 2866 10 0 0 chr4 13928391 13928701 -170359961 - AluY SINE Alu -1 310 1 3474 245 50 46 chr4 13928701 13928946 -170359716 + L1MA6 LINE L1 2892 3155 -3693 672 115 0 0 chr4 13928946 13929050 -170359612 + (TA)n Simple_repeat Simple_repeat 1 104 0 3474 245 50 46 chr4 13929050 13929088 -170359574 + L1MA6 LINE L1 3155 3191 -3657 3055 202 17 17 chr4 13929084 13930173 -170358489 + L1MA6 LINE L1 5287 6370 -632 * 2432 194 11 11 chr4 13930183 13930631 -170358031 + L1MA3 LINE L1 16 463 -7102 608 140 11 0 chr4 13930633 13930726 -170357936 - AluSg SINE Alu -216 94 1 806 154 12 12 chr4 13930726 13930888 -170357774 + L1MA3 LINE L1 5631 5792 -1773 3126 123 18 22 chr4 13930888 13931435 -170357227 + L1MA3 LINE L1 7175 7724 0 2374 192 42 32 chr4 13931442 13932040 -170356622 + L1MA6 LINE L1 6399 7002 0 523 327 145 21 chr4 13932343 13932777 -170355885 - L3 LINE CR1 -824 753 266 26 0 0 0 chr4 13932875 13932901 -170355761 + AT_rich Low_complexity Low_complexity 1 26 0 2223 102 0 13 chr4 13933366 13933679 -170354983 - AluSc SINE Alu 0 309 1 188 377 44 50 chr4 13934801 13934960 -170353702 - MIR SINE MIR -80 182 25 1291 312 11 21 chr4 13935471 13935907 -170352755 - LTR16A LTR ERVL 0 450 19 849 156 172 11 chr4 13936583 13936763 -170351899 + MER4B LTR ERV1 1 209 -401 2358 243 39 15 chr4 13936766 13937109 -170351553 + L1MC/D LINE L1 3791 4124 -2022 6240 93 14 11 chr4 13937109 13938888 -170349774 + L1PA8 LINE L1 4359 6172 0 2358 243 39 15 chr4 13938888 13939348 -170349314 + L1MC/D LINE L1 4124 4613 -1533 246 235 12 0 chr4 13939348 13939429 -170349233 + (TA)n Simple_repeat Simple_repeat 2 83 0 445 194 112 8 chr4 13939431 13939565 -170349097 + L1MC/D LINE L1 4626 4773 -1373 2203 121 0 0 chr4 13939566 13939873 -170348789 + AluSx SINE Alu 3 309 -3 1069 253 54 0 chr4 13939893 13940190 -170348472 - MER58B DNA MER1_type -1 340 28 589 240 43 43 chr4 13940232 13940338 -170348324 + L1MC/D LINE L1 4827 4932 -1214 1583 115 0 0 chr4 13940338 13940556 -170348106 + AluSg/x SINE Alu 85 302 -8 589 240 43 43 chr4 13940556 13940703 -170347959 + L1MC/D LINE L1 4931 5080 -1066 335 180 104 17 chr4 13940737 13940826 -170347836 + L1MC/D LINE L1 5468 5561 -681 1393 266 96 29 chr4 13940834 13941427 -170347235 + L1ME1 LINE L1 5505 6137 -29 1046 314 109 14 chr4 13941493 13942054 -170346608 - L2 LINE L2 -1148 2166 1553 361 359 31 8 chr4 13943003 13943131 -170345531 - MIR SINE MIR -62 146 16 262 325 94 0 chr4 13943447 13943564 -170345098 + MIR SINE MIR 57 184 -78 213 231 0 0 chr4 13943637 13943676 -170344986 + (CATATA)n Simple_repeat Simple_repeat 1 39 0 192 179 0 0 chr4 13943850 13943889 -170344773 + (CA)n Simple_repeat Simple_repeat 1 39 0 2465 186 9 17 chr4 13944721 13945188 -170343474 + MLT1C LTR MaLR 1 463 -4 246 357 10 10 chr4 13945256 13945354 -170343308 + MIR SINE MIR 8 105 -157 242 355 116 6 chr4 13945381 13945553 -170343109 + MIR SINE MIR 10 200 -62 207 100 0 0 chr4 13945935 13945965 -170342697 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 249 273 110 65 chr4 13946206 13946360 -170342302 - MIR SINE MIR -54 208 48 254 284 125 51 chr4 13946671 13946847 -170341815 + MIR SINE MIR 59 247 -15 216 0 0 0 chr4 13947710 13947734 -170340928 + (TG)n Simple_repeat Simple_repeat 2 25 0 344 366 43 26 chr4 13948102 13948334 -170340328 + L2 LINE L2 2617 2852 -462 387 0 0 0 chr4 13948961 13949004 -170339658 + (GA)n Simple_repeat Simple_repeat 2 44 0 232 306 125 44 chr4 13949416 13949664 -170338998 - L2 LINE L2 -1 3312 3045 261 287 72 20 chr4 13949960 13950067 -170338595 - MIR SINE MIR -63 145 54 912 255 0 0 chr4 13950067 13950267 -170338395 + MER58A DNA MER1_type 1 200 -24 23 33 0 0 chr4 13950511 13950541 -170338121 + AT_rich Low_complexity Low_complexity 1 30 0 822 40 0 0 chr4 13950663 13950762 -170337900 - L1P LINE L1 -1275 4871 4773 6791 14 18 0 chr4 13950762 13951545 -170337117 + L1PA2 LINE L1 5355 6151 -4 692 310 147 31 chr4 13951800 13952277 -170336385 - MLT1G1 LTR MaLR -3 592 61 257 292 12 0 chr4 13953452 13953551 -170335111 - MLT-int LTR MaLR -1229 142 43 719 276 109 23 chr4 13953673 13953938 -170334724 - MLT1G3 LTR MaLR -217 313 26 1080 334 55 27 chr4 13954103 13954737 -170333925 + MLT2F LTR ERVL 8 659 -4 21 0 0 0 chr4 13954757 13954778 -170333884 + AT_rich Low_complexity Low_complexity 1 21 0 313 315 77 8 chr4 13955386 13955516 -170333146 + MIR SINE MIR 47 185 -77 27 62 0 0 chr4 13955533 13955581 -170333081 + AT_rich Low_complexity Low_complexity 1 48 0 420 292 58 43 chr4 13956544 13956702 -170331960 + MIR3 SINE MIR 33 193 -15 4573 199 52 21 chr4 13957780 13959167 -170329495 - L1MC2 LINE L1 -13 6331 4912 1155 189 0 14 chr4 13959168 13959385 -170329277 - AluJo SINE Alu -4 308 95 231 326 31 20 chr4 13959752 13959850 -170328812 - L2 LINE L2 0 3313 3215 2453 109 8 16 chr4 13960289 13960656 -170328006 + THE1B LTR MaLR 1 364 0 259 330 35 17 chr4 13960864 13960979 -170327683 - MIR SINE MIR -138 124 8 749 264 52 62 chr4 13961202 13961509 -170327153 + LTR16C LTR ERVL 180 483 -8 203 300 78 11 chr4 13962590 13962680 -170325982 + MIR SINE MIR 100 195 -67 224 232 0 0 chr4 13963720 13963776 -170324886 + A-rich Low_complexity Low_complexity 1 56 0 225 0 0 0 chr4 13963885 13963910 -170324752 + (A)n Simple_repeat Simple_repeat 1 25 0 218 295 13 0 chr4 13964135 13964213 -170324449 + (TA)n Simple_repeat Simple_repeat 2 80 0 520 288 130 45 chr4 13965985 13966454 -170322208 + MLT1H LTR MaLR 13 521 -28 312 311 57 83 chr4 13967521 13967871 -170320791 + L1MEd LINE L1 54 394 -5725 325 262 86 0 chr4 13968142 13968258 -170320404 + L1ME LINE L1 5269 5395 -751 770 163 7 22 chr4 13968351 13968486 -170320176 + AluJ SINE Alu 1 133 -169 2489 113 51 0 chr4 13968486 13969103 -170319559 - L1PA8 LINE L1 -534 5597 4953 3842 97 5 7 chr4 13969103 13969657 -170319005 + L1PA8 LINE L1 5610 6165 -7 785 229 18 0 chr4 13969657 13969823 -170318839 + AluJ SINE Alu 135 303 -9 359 313 26 14 chr4 13969823 13970064 -170318598 + L1ME LINE L1 5443 5700 -470 1681 313 75 30 chr4 13970634 13971646 -170317016 + L2 LINE L2 2131 3205 -108 661 287 89 13 chr4 13971642 13971879 -170316783 - MIR SINE MIR -6 256 2 * 329 289 11 0 chr4 13971914 13972004 -170316658 + L2 LINE L2 3221 3311 -2 440 271 16 94 chr4 13972077 13972269 -170316393 + MIR SINE MIR 82 258 -4 1717 130 72 44 chr4 13972660 13973021 -170315641 + THE1C LTR MaLR 3 373 -2 242 243 95 0 chr4 13973332 13973406 -170315256 - MIR SINE MIR -79 183 103 181 287 183 37 chr4 13973455 13973619 -170315043 + MIR SINE MIR 25 212 -50 276 319 72 25 chr4 13974252 13974528 -170314134 - L1ME LINE L1 -320 5801 5513 1345 181 0 41 chr4 13975875 13976145 -170312517 - Tigger3(Golem) DNA MER2_type -1 3028 2770 1865 167 0 10 chr4 13976219 13976512 -170312150 + AluSx SINE Alu 1 290 -22 351 0 0 0 chr4 13976512 13976551 -170312111 + (CA)n Simple_repeat Simple_repeat 2 40 0 537 214 0 15 chr4 13976551 13976673 -170311989 + L1 LINE L1 3571 3695 -2451 248 159 32 0 chr4 13976687 13976750 -170311912 + L1 LINE L1 3673 3737 -2409 1488 136 0 14 chr4 13976758 13976971 -170311691 + AluSg/x SINE Alu 84 293 -17 2348 191 11 2 chr4 13976976 13977446 -170311216 + L1MA6 LINE L1 5827 6300 0 2347 131 38 8 chr4 13977446 13977918 -170310744 - Tigger3(Golem) DNA MER2_type -258 2771 2286 2311 79 24 0 chr4 13978205 13978497 -170310165 - AluY SINE Alu -12 299 1 612 167 0 0 chr4 13978843 13978945 -170309717 + AluSc SINE Alu 199 300 -9 2094 120 10 0 chr4 13979413 13979712 -170308950 - AluSg SINE Alu -8 302 1 22 0 0 0 chr4 13979717 13979739 -170308923 + AT_rich Low_complexity Low_complexity 1 22 0 232 359 23 23 chr4 13979981 13980109 -170308553 + MIR SINE MIR 12 139 -123 839 313 52 45 chr4 13980333 13981041 -170307621 + L2 LINE L2 2584 3299 -14 244 274 0 32 chr4 13981417 13981479 -170307183 + L2 LINE L2 3196 3255 -17 1502 91 55 0 chr4 13982003 13982222 -170306440 - L1PA11 LINE L1 -4 6170 5940 21 36 0 0 chr4 13983493 13983521 -170305141 + AT_rich Low_complexity Low_complexity 1 28 0 2119 126 0 0 chr4 13983597 13983883 -170304779 - AluSc SINE Alu -23 286 1 2780 10 0 0 chr4 13984349 13984651 -170304011 - AluYa5 SINE Alu -9 302 1 189 330 96 0 chr4 13985126 13985220 -170303442 + MIR SINE MIR 16 118 -90 220 301 0 32 chr4 13985326 13985419 -170303243 - MIR SINE MIR -44 218 129 2252 100 3 22 chr4 13985472 13985783 -170302879 + AluY SINE Alu 1 305 -6 514 291 42 0 chr4 13985864 13986029 -170302633 + MER5B DNA MER1_type 3 174 -4 310 222 78 132 chr4 13986914 13987081 -170301581 - MIR SINE MIR -82 180 23 2516 81 136 5 chr4 13987279 13987675 -170300987 + LTR7 LTR ERV1 1 448 -2 14450 101 26 21 chr4 13987677 13990475 -170298187 + HERVH LTR ERV1 1 2995 -4718 5964 77 3 5 chr4 13990454 13991309 -170297353 + HERVH LTR ERV1 3140 3993 -3720 * 4114 145 0 1 chr4 13991311 13991974 -170296688 + HERVH LTR ERV1 4488 5149 -2564 1249 140 28 0 chr4 13991975 13992189 -170296473 + HERVH LTR ERV1 5600 5819 -1894 2248 93 48 13 chr4 13992189 13992566 -170296096 + HERVH LTR ERV1 7324 7713 0 2531 85 128 5 chr4 13992566 13992965 -170295697 + LTR7 LTR ERV1 1 448 -2 238 171 32 32 chr4 13994051 13994174 -170294488 + (TA)n Simple_repeat Simple_repeat 2 124 0 45 0 0 0 chr4 13994236 13994281 -170294381 + AT_rich Low_complexity Low_complexity 1 45 0 249 202 39 51 chr4 13994286 13994464 -170294198 + (TATAG)n Simple_repeat Simple_repeat 2 177 0 * 302 176 27 85 chr4 13994422 13994610 -170294052 + (TATAA)n Simple_repeat Simple_repeat 2 178 0 * 354 197 33 55 chr4 13994546 13994729 -170293933 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 * 400 209 40 23 chr4 13994669 13994900 -170293762 + (TA)n Simple_repeat Simple_repeat 1 234 0 501 16 0 0 chr4 13996136 13996200 -170292462 + L1PA3 LINE L1 6089 6152 -3 437 237 0 11 chr4 13996495 13996588 -170292074 - MER5A DNA MER1_type -84 105 14 198 0 0 0 chr4 13996711 13996733 -170291929 + (T)n Simple_repeat Simple_repeat 1 22 0 2139 158 43 39 chr4 13997086 13997351 -170291311 - MLT1C LTR MaLR 0 467 198 2063 148 52 0 chr4 13997351 13997696 -170290966 + THE1B LTR MaLR 2 364 0 2139 158 43 39 chr4 13997696 13997893 -170290769 - MLT1C LTR MaLR -269 198 3 24 0 0 0 chr4 13998463 13998487 -170290175 + AT_rich Low_complexity Low_complexity 1 24 0 427 107 16 57 chr4 13999515 13999637 -170289025 + (TTC)n Simple_repeat Simple_repeat 2 118 0 534 288 86 38 chr4 14000621 14000913 -170287749 - L2 LINE L2 0 3313 3008 1658 202 5 63 chr4 14001214 14001624 -170287038 - MLT1B LTR MaLR -4 386 1 335 253 12 12 chr4 14002048 14002210 -170286452 + GA-rich Low_complexity Low_complexity 2 163 0 6702 75 5 2 chr4 14002301 14003975 -170284687 + L1PA7 LINE L1 4480 6150 -4 191 267 58 35 chr4 14004105 14004191 -170284471 - MIR3 SINE MIR -38 170 83 310 287 11 0 chr4 14005363 14005450 -170283212 - MIR SINE MIR -63 145 58 275 304 55 118 chr4 14005868 14006266 -170282396 + L2 LINE L2 2892 3264 -8 * 441 198 23 0 chr4 14006262 14006348 -170282314 + MIR SINE MIR 56 143 -119 3492 156 40 39 chr4 14006723 14007449 -170281213 + LTR8A LTR ERV1 1 727 0 240 313 50 0 chr4 14007510 14007609 -170281053 + MIR3 SINE MIR 98 201 -7 275 319 107 6 chr4 14008454 14008623 -170280039 - MIR SINE MIR -11 251 66 2166 137 82 20 chr4 14009109 14009512 -170279150 + MSTA LTR MaLR 1 428 0 225 262 131 0 chr4 14009512 14009596 -170279066 + MER63 DNA MER1_type 11 731 -331 641 297 6 28 chr4 14010161 14010343 -170278319 - MIR SINE MIR -37 225 48 474 272 37 31 chr4 14010433 14010595 -170278067 + MIR3 SINE MIR 19 181 -27 372 372 64 6 chr4 14010793 14011036 -170277626 - MIR SINE MIR -4 258 7 689 190 72 9 chr4 14011352 14011592 -170277070 + MLT1B LTR MaLR 83 380 -10 213 267 0 70 chr4 14011862 14011948 -170276714 - MIR SINE MIR -88 174 95 352 359 96 23 chr4 14012460 14012680 -170275982 + MIR SINE MIR 20 255 -7 1757 114 27 71 chr4 14013009 14013345 -170275317 - AluSg SINE Alu 0 323 1 188 362 53 20 chr4 14014198 14014350 -170274312 + MIR SINE MIR 79 235 -27 515 362 63 23 chr4 14014369 14014800 -170273862 + L3 LINE CR1 936 1383 -194 2628 286 86 55 chr4 14015098 14016208 -170272454 + L2 LINE L2 1570 2739 -574 2049 131 0 16 chr4 14016208 14016520 -170272142 + AluSx SINE Alu 1 307 -5 2628 286 86 55 chr4 14016520 14017068 -170271594 + L2 LINE L2 2739 3268 -45 741 275 94 26 chr4 14017098 14017407 -170271255 - LTR33 LTR ERVL -178 343 14 747 260 29 25 chr4 14018300 14018504 -170270158 + MIR SINE MIR 53 257 -5 1208 219 88 78 chr4 14018704 14018806 -170269856 + MLT1D LTR MaLR 3 102 -403 2708 94 3 0 chr4 14018806 14019169 -170269493 + THE1B LTR MaLR 1 364 0 1208 219 88 78 chr4 14019169 14019564 -170269098 + MLT1D LTR MaLR 102 505 0 329 191 0 109 chr4 14019819 14019929 -170268733 - MER53 DNA DNA -68 121 24 273 192 0 0 chr4 14019886 14019938 -170268724 + MER53 DNA DNA 134 185 -4 * 512 315 12 6 chr4 14019991 14020153 -170268509 + MER5B DNA MER1_type 1 163 -15 433 328 44 28 chr4 14020162 14020342 -170268320 - MER5A DNA MER1_type 0 189 7 223 316 13 13 chr4 14021547 14021626 -170267036 + MIR SINE MIR 15 93 -169 205 200 233 42 chr4 14022383 14022503 -170266159 + MIR SINE MIR 117 259 -3 216 407 15 0 chr4 14022880 14023015 -170265647 - L2 LINE L2 -17 3296 3160 2218 112 0 3 chr4 14023337 14023632 -170265030 + AluSc SINE Alu 1 294 -15 281 286 67 57 chr4 14023870 14023975 -170264687 - L2 LINE L2 -309 2963 2858 223 267 93 12 chr4 14024095 14024181 -170264481 + MIR SINE MIR 116 208 -54 1752 307 103 68 chr4 14024864 14025518 -170263144 - L2 LINE L2 -4 3309 2679 1891 195 13 23 chr4 14025518 14025908 -170262754 - MLT1B LTR MaLR -4 386 1 1752 307 103 68 chr4 14025908 14026366 -170262296 - L2 LINE L2 -634 2679 2238 1456 134 31 0 chr4 14026366 14026589 -170262073 - MER30 DNA MER1_type 0 230 1 1752 307 103 68 chr4 14026589 14027207 -170261455 - L2 LINE L2 -1075 2238 1513 494 136 0 12 chr4 14027376 14027457 -170261205 - AluSg/x SINE Alu -17 295 216 27 73 0 0 chr4 14028646 14028701 -170259961 + AT_rich Low_complexity Low_complexity 1 55 0 804 276 14 9 chr4 14028783 14029004 -170259658 + MER58A DNA MER1_type 2 223 -1 643 304 118 32 chr4 14029055 14029410 -170259252 - MLT1L LTR MaLR -4 611 195 1981 136 14 3 chr4 14029410 14029705 -170258957 - AluSx SINE Alu -14 298 1 643 304 118 32 chr4 14029705 14029875 -170258787 - MLT1L LTR MaLR -420 195 41 522 234 9 9 chr4 14029955 14030062 -170258600 + L2 LINE L2 3189 3295 -18 293 314 58 49 chr4 14030626 14030852 -170257810 - L2 LINE L2 -194 3078 2851 210 197 45 45 chr4 14031472 14031538 -170257124 + MIR3 SINE MIR 111 176 -32 226 313 0 0 chr4 14033100 14033164 -170255498 - MIR SINE MIR -133 129 66 348 257 48 119 chr4 14033663 14033787 -170254875 + MIR SINE MIR 20 125 -137 186 71 0 0 chr4 14033787 14033815 -170254847 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 348 257 48 119 chr4 14033815 14033900 -170254762 + MIR SINE MIR 125 214 -48 212 313 9 8 chr4 14034048 14034190 -170254472 + MIR3 SINE MIR 91 207 -1 2493 81 0 0 chr4 14034700 14035010 -170253652 + AluY SINE Alu 1 310 -1 361 299 160 18 chr4 14035251 14035532 -170253130 - MLT1J1 LTR MaLR -106 340 20 400 228 53 70 chr4 14035982 14036096 -170252566 + L2 LINE L2 3202 3313 0 1231 199 126 0 chr4 14036207 14036351 -170252311 - AluSx SINE Alu -6 296 172 207 0 0 0 chr4 14036351 14036374 -170252288 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1231 199 126 0 chr4 14036374 14036490 -170252172 - AluSx SINE Alu -130 172 3 513 102 19 74 chr4 14036554 14036662 -170252000 + AluSg/x SINE Alu 208 309 0 221 167 19 37 chr4 14036668 14036697 -170251965 + GA-rich Low_complexity Low_complexity 1 30 -23 1934 147 0 20 chr4 14036697 14036990 -170251672 + AluSx SINE Alu 26 312 0 221 167 19 37 chr4 14036990 14037014 -170251648 + GA-rich Low_complexity Low_complexity 30 53 0 225 269 0 0 chr4 14037726 14037804 -170250858 + (TATG)n Simple_repeat Simple_repeat 1 78 0 198 327 0 0 chr4 14038186 14038238 -170250424 + MIR SINE MIR 93 144 -64 348 282 73 0 chr4 14038955 14039065 -170249597 - L2 LINE L2 -12 3301 3184 689 332 42 49 chr4 14039283 14039708 -170248954 + L2 LINE L2 2861 3282 -31 699 282 13 15 chr4 14039738 14040135 -170248527 + L1M4 LINE L1 2918 3313 -2833 1743 147 47 32 chr4 14040148 14040488 -170248174 + MER21B LTR ERV1 508 852 -11 335 331 45 19 chr4 14040654 14040808 -170247854 + MIR3 SINE MIR 3 160 -48 324 240 78 36 chr4 14040890 14041082 -170247580 - MER113 DNA MER1_type? -321 200 1 241 339 95 42 chr4 14041147 14041315 -170247347 - L2 LINE L2 0 3272 3096 206 288 34 51 chr4 14041339 14041457 -170247205 + L2 LINE L2 2626 2741 -573 771 209 40 60 chr4 14041462 14041663 -170246999 + MER58A DNA MER1_type 7 203 -21 249 108 0 0 chr4 14042915 14042952 -170245710 + (TG)n Simple_repeat Simple_repeat 2 38 0 246 297 0 0 chr4 14044048 14044112 -170244550 + (TATATG)n Simple_repeat Simple_repeat 2 65 0 1295 255 40 64 chr4 14044602 14045131 -170243531 + LTR40a LTR ERVL 1 516 -3 311 315 97 37 chr4 14045320 14045536 -170243126 + MIR SINE MIR 10 238 -24 254 215 254 31 chr4 14045699 14045829 -170242833 + MLT1L LTR MaLR 54 212 -403 198 0 0 0 chr4 14045913 14045935 -170242727 + (A)n Simple_repeat Simple_repeat 1 22 0 1283 235 29 63 chr4 14045940 14046314 -170242348 + MLT1C LTR MaLR 39 397 -70 225 0 0 0 chr4 14046314 14046339 -170242323 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 1283 235 29 63 chr4 14046339 14046406 -170242256 + MLT1C LTR MaLR 397 465 -2 252 97 0 97 chr4 14046700 14046762 -170241900 - LTR66 LTR ERVL -171 439 384 202 150 0 25 chr4 14046767 14046807 -170241855 + (TA)n Simple_repeat Simple_repeat 1 39 0 425 258 0 0 chr4 14047629 14047726 -170240936 - MER81 DNA DNA -13 101 5 192 290 0 93 chr4 14047932 14048039 -170240623 + MIR SINE MIR 96 192 -70 316 146 0 0 chr4 14049680 14049735 -170238927 + MADE1 DNA Mariner 1 55 -25 290 352 142 37 chr4 14049775 14050099 -170238563 - L2 LINE L2 -421 2893 2536 318 206 0 27 chr4 14050214 14050287 -170238375 - MER116 DNA Mariner -2 78 8 210 179 0 0 chr4 14050528 14050584 -170238078 + A-rich Low_complexity Low_complexity 1 56 0 701 181 44 54 chr4 14051355 14051508 -170237154 + L1MA8 LINE L1 6090 6242 -49 2192 100 3 55 chr4 14051508 14051837 -170236825 + AluSq SINE Alu 2 313 0 701 181 44 54 chr4 14051837 14051887 -170236775 + L1MA8 LINE L1 6242 6291 0 449 34 17 0 chr4 14052094 14052153 -170236509 + (TAAA)n Simple_repeat Simple_repeat 2 61 0 306 0 0 0 chr4 14053412 14053446 -170235216 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 182 331 88 11 chr4 14053695 14053876 -170234786 - L2 LINE L2 -374 2940 2746 249 83 0 0 chr4 14054406 14054442 -170234220 + (TG)n Simple_repeat Simple_repeat 2 37 0 234 390 8 0 chr4 14054539 14054657 -170234005 - L2 LINE L2 -671 2643 2525 367 369 8 8 chr4 14055442 14055564 -170233098 + MIR3 SINE MIR 63 184 -24 1916 286 78 19 chr4 14056314 14057141 -170231521 - L2 LINE L2 -239 3074 2201 2491 180 31 72 chr4 14057147 14057859 -170230803 + L1MA9 LINE L1 5592 6274 -38 439 260 165 57 chr4 14057877 14058435 -170230227 - L2 LINE L2 -1106 2208 1591 2105 116 45 0 chr4 14059250 14059542 -170229120 - AluSg SINE Alu -5 305 1 209 316 34 77 chr4 14059579 14059788 -170228874 + L2 LINE L2 2855 3054 -218 542 310 51 35 chr4 14059804 14060059 -170228603 - MIR SINE MIR -3 259 1 212 306 42 0 chr4 14060504 14060576 -170228086 - MIR SINE MIR -170 92 18 21 0 0 0 chr4 14061665 14061686 -170226976 + AT_rich Low_complexity Low_complexity 1 21 0 2257 113 3 3 chr4 14061704 14062014 -170226648 - AluSg SINE Alu 0 310 1 306 235 82 12 chr4 14062061 14062146 -170226516 + MIR SINE MIR 73 163 -99 595 282 63 35 chr4 14062213 14062532 -170226130 + LTR16C LTR ERVL 91 418 -73 938 240 21 34 chr4 14062639 14062994 -170225668 - MLT2C1 LTR ERVL -11 652 44 39170 51 3 5 chr4 14062998 14068177 -170220485 + L1PA4 LINE L1 3 5174 -972 4398 41 2 6 chr4 14068177 14068715 -170219947 + L1PA4 LINE L1 5615 6152 -3 206 239 14 0 chr4 14068805 14068876 -170219786 + (TTATA)n Simple_repeat Simple_repeat 4 75 0 791 218 5 21 chr4 14069239 14069427 -170219235 + MER105 DNA DNA 19 203 -1 284 320 81 20 chr4 14069554 14069751 -170218911 + L1ME1 LINE L1 5955 6163 -3 2337 194 14 0 chr4 14070487 14070930 -170217732 + MER70A LTR ERVL 23 471 -1 4559 80 8 6 chr4 14073251 14073885 -170214777 + L1PA10 LINE L1 5534 6168 0 932 181 104 40 chr4 14074140 14074183 -170214479 - MER33 DNA MER1_type -2267 318 279 2019 99 0 66 chr4 14074183 14074509 -170214153 - AluSc SINE Alu 0 306 1 932 181 104 40 chr4 14074509 14074762 -170213900 - MER33 DNA MER1_type -2306 279 1 201 74 0 0 chr4 14075153 14075180 -170213482 + (CA)n Simple_repeat Simple_repeat 2 28 0 261 179 47 38 chr4 14075757 14075863 -170212799 + (TAA)n Simple_repeat Simple_repeat 1 107 0 358 281 160 35 chr4 14075875 14076106 -170212556 - MIR SINE MIR -1 261 2 243 181 278 0 chr4 14076334 14076406 -170212256 + L1MA9 LINE L1 5702 5793 -519 220 189 38 0 chr4 14076406 14076459 -170212203 + (TA)n Simple_repeat Simple_repeat 1 55 0 2013 196 25 6 chr4 14076463 14076947 -170211715 + L1MA9 LINE L1 5799 6291 -21 652 315 119 43 chr4 14077740 14077967 -170210695 + L2 LINE L2 2458 2666 -647 1941 132 48 40 chr4 14077967 14078338 -170210324 + THE1C LTR MaLR 2 375 0 652 315 119 43 chr4 14078338 14078380 -170210282 + L2 LINE L2 2666 2703 -610 2100 156 117 5 chr4 14078380 14078765 -170209897 + MSTA LTR MaLR 1 428 0 652 315 119 43 chr4 14078765 14079282 -170209380 + L2 LINE L2 2703 3307 -6 227 224 250 0 chr4 14080304 14080380 -170208282 - L2 LINE L2 -17 3296 3202 239 279 62 54 chr4 14080445 14080574 -170208088 - MIR SINE MIR -80 182 53 896 20 0 82 chr4 14080627 14080823 -170207839 + (TA)n Simple_repeat Simple_repeat 1 180 0 398 297 16 0 chr4 14080835 14080963 -170207699 - MLT1G1 LTR MaLR -456 139 10 1209 259 57 12 chr4 14080974 14081395 -170207267 + L1MC4 LINE L1 7425 7864 -178 22 56 0 0 chr4 14081458 14081494 -170207168 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr4 14081645 14081671 -170206991 + AT_rich Low_complexity Low_complexity 1 26 0 25 65 0 0 chr4 14082036 14082082 -170206580 + AT_rich Low_complexity Low_complexity 1 46 0 665 213 10 46 chr4 14082489 14082686 -170205976 - MER3 DNA MER1_type -5 204 15 635 148 58 7 chr4 14082689 14082844 -170205818 - L1MA7 LINE L1 0 6291 6129 41526 44 3 1 chr4 14082947 14089086 -170199576 - L1PA3 LINE L1 0 6155 5 1131 52 0 0 chr4 14089228 14089363 -170199299 + AluY SINE Alu 1 135 -176 501 279 54 66 chr4 14089407 14089522 -170199140 + L1ME2 LINE L1 5498 5613 -551 2138 233 12 52 chr4 14089522 14090097 -170198565 + MLT2B3 LTR ERVL 3 554 0 501 279 54 66 chr4 14090097 14090367 -170198295 + L1ME2 LINE L1 5613 5884 -280 23 33 0 0 chr4 14090805 14090835 -170197827 + AT_rich Low_complexity Low_complexity 1 30 0 673 277 22 0 chr4 14090895 14091079 -170197583 + MER5A DNA MER1_type 2 189 0 972 201 18 27 chr4 14091434 14091658 -170197004 + MER92B LTR ERV1 1 222 -414 532 279 32 11 chr4 14091929 14092119 -170196543 + L1MB7 LINE L1 13 206 -6653 3158 159 14 17 chr4 14092168 14092748 -170195914 + L1PB4 LINE L1 5577 6154 -2 4180 239 48 40 chr4 14092780 14093844 -170194818 + L1MB7 LINE L1 4181 5264 -1693 1401 185 6 106 chr4 14093844 14094174 -170194488 - AluJb SINE Alu -4 298 2 4180 239 48 40 chr4 14094174 14094727 -170193935 + L1MB7 LINE L1 5264 5811 -1146 1893 176 0 0 chr4 14094730 14095020 -170193642 - AluJb SINE Alu -22 290 1 2337 97 0 3 chr4 14095043 14095354 -170193308 + AluY SINE Alu 1 310 -1 2626 214 41 49 chr4 14095439 14096353 -170192309 + L1MB7 LINE L1 5976 6875 -120 308 191 225 0 chr4 14096357 14096446 -170192216 - Tigger5 DNA MER2_type 0 2323 2215 286 200 0 0 chr4 14096438 14096493 -170192169 - Tigger5 DNA MER2_type -2268 55 1 * 410 246 0 0 chr4 14096494 14096604 -170192058 + L1MB8 LINE L1 6065 6174 -4 339 228 40 20 chr4 14097121 14097222 -170191440 + Charlie8 DNA MER1_type 75 177 -2240 1135 280 105 42 chr4 14097870 14098746 -170189916 + L2 LINE L2 2170 3164 -149 297 282 8 8 chr4 14098746 14098870 -170189792 + (TA)n Simple_repeat Simple_repeat 2 125 0 299 250 42 89 chr4 14098876 14099044 -170189618 + L2 LINE L2 3115 3274 -39 229 318 9 19 chr4 14099044 14099151 -170189511 - MLT1J LTR MaLR -301 210 105 300 83 0 0 chr4 14099552 14099600 -170189062 + (CA)n Simple_repeat Simple_repeat 1 48 0 267 275 0 38 chr4 14099887 14099967 -170188695 + L2 LINE L2 3194 3270 -2 233 417 37 0 chr4 14100024 14100187 -170188475 - MIR SINE MIR -93 169 1 216 327 18 44 chr4 14100562 14100675 -170187987 - MIR SINE MIR -145 117 8 422 285 161 15 chr4 14101054 14101273 -170187389 - MIR SINE MIR -7 255 5 408 298 78 41 chr4 14101284 14101526 -170187136 - MIR SINE MIR -6 256 6 450 318 73 30 chr4 14102916 14103149 -170185513 + MIR SINE MIR 8 250 -12 189 0 0 0 chr4 14103222 14103243 -170185419 + (ATG)n Simple_repeat Simple_repeat 3 23 0 255 143 41 0 chr4 14103614 14103663 -170184999 - MER94 DNA DNA -79 55 5 1612 95 54 0 chr4 14104643 14104865 -170183797 - L1PA11 LINE L1 -1 6173 5940 2491 76 0 0 chr4 14106204 14106508 -170182154 - AluY SINE Alu -7 304 1 204 313 9 8 chr4 14107019 14107161 -170181501 - MIR3 SINE MIR -1 207 91 271 269 32 43 chr4 14107309 14107402 -170181260 - MIR SINE MIR -48 214 123 395 204 15 193 chr4 14108078 14108342 -170180320 + L2 LINE L2 3093 3309 -4 198 279 93 12 chr4 14109025 14109111 -170179551 - MIR SINE MIR -54 208 116 4399 191 46 22 chr4 14109465 14110434 -170178228 + L1MC2 LINE L1 5341 6333 -11 238 171 32 32 chr4 14111296 14111419 -170177243 + (TA)n Simple_repeat Simple_repeat 2 124 0 45 0 0 0 chr4 14111481 14111526 -170177136 + AT_rich Low_complexity Low_complexity 1 45 0 362 209 41 35 chr4 14111671 14111843 -170176819 + (TTATA)n Simple_repeat Simple_repeat 5 177 0 * 374 206 33 33 chr4 14111775 14111955 -170176707 + (TA)n Simple_repeat Simple_repeat 1 180 0 205 306 42 0 chr4 14113310 14113382 -170175280 + MIR SINE MIR 18 92 -170 509 294 59 43 chr4 14113827 14114082 -170174580 + MIR SINE MIR 1 259 -3 218 330 29 72 chr4 14114098 14114307 -170174355 - L2 LINE L2 -218 3054 2855 812 216 78 47 chr4 14114345 14114600 -170174062 + AluSg SINE Alu 2 264 -46 361 112 17 60 chr4 14115577 14115693 -170172969 + (GAA)n Simple_repeat Simple_repeat 2 112 0 218 316 13 13 chr4 14117050 14117129 -170171533 + MIR SINE MIR 15 93 -169 368 379 17 0 chr4 14118405 14118582 -170170080 - L2 LINE L2 -518 2796 2617 180 0 0 0 chr4 14118969 14118989 -170169673 + (CA)n Simple_repeat Simple_repeat 2 21 0 819 275 94 26 chr4 14120058 14120367 -170168295 + LTR33 LTR ERVL 14 343 -178 924 269 97 17 chr4 14120397 14120917 -170167745 - L2 LINE L2 -45 3268 2713 263 85 21 0 chr4 14120917 14120964 -170167698 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1763 133 0 24 chr4 14120967 14121260 -170167402 - AluSq SINE Alu -27 286 1 421 297 81 41 chr4 14121525 14121602 -170167060 + MLT1L LTR MaLR 134 206 -409 1986 135 14 3 chr4 14121602 14121899 -170166763 + AluSx SINE Alu 1 300 -12 421 297 81 41 chr4 14121899 14122254 -170166408 + MLT1L LTR MaLR 206 611 -4 897 276 14 9 chr4 14122325 14122546 -170166116 - MER58A DNA MER1_type -1 223 2 27 73 0 0 chr4 14122628 14122683 -170165979 + AT_rich Low_complexity Low_complexity 1 55 0 182 267 58 35 chr4 14123764 14123850 -170164812 + MIR3 SINE MIR 83 170 -38 4378 113 10 3 chr4 14123981 14124593 -170164069 - L1PA7 LINE L1 -5 6149 5534 21 0 0 0 chr4 14126239 14126260 -170162402 + AT_rich Low_complexity Low_complexity 1 21 0 2364 108 0 0 chr4 14126289 14126595 -170162067 - AluSg SINE Alu -4 306 1 2302 66 7 7 chr4 14127064 14127367 -170161295 - AluYa5 SINE Alu -8 303 1 2686 240 43 37 chr4 14177840 14178283 -170110379 + L1MB7 LINE L1 3998 4437 -1709 1426 182 6 106 chr4 14178283 14178613 -170110049 - AluJb SINE Alu -4 298 2 2686 240 43 37 chr4 14178613 14179166 -170109496 + L1MB7 LINE L1 4437 5000 -1146 1893 176 0 0 chr4 14179169 14179459 -170109203 - AluJb SINE Alu -22 290 1 2337 97 0 3 chr4 14179482 14179793 -170108869 + AluY SINE Alu 1 310 -1 2626 214 41 49 chr4 14179878 14180792 -170107870 + L1MB7 LINE L1 5165 6064 -120 308 191 225 0 chr4 14180796 14180885 -170107777 - Tigger5 DNA MER2_type 0 2323 2215 286 200 0 0 chr4 14180877 14180932 -170107730 - Tigger5 DNA MER2_type -2268 55 1 * 410 246 0 0 chr4 14180933 14181043 -170107619 + L1MB8 LINE L1 6065 6174 -4 339 228 40 20 chr4 14181560 14181661 -170107001 + Charlie8 DNA MER1_type 75 177 -2240 1135 280 105 42 chr4 14182309 14183185 -170105477 + L2 LINE L2 2170 3164 -149 297 282 8 8 chr4 14183185 14183309 -170105353 + (TA)n Simple_repeat Simple_repeat 2 125 0 299 250 42 89 chr4 14183315 14183483 -170105179 + L2 LINE L2 3115 3274 -39 229 318 9 19 chr4 14183483 14183590 -170105072 - MLT1J LTR MaLR -301 210 105 300 83 0 0 chr4 14183991 14184039 -170104623 + (CA)n Simple_repeat Simple_repeat 1 48 0 267 275 0 38 chr4 14184326 14184406 -170104256 + L2 LINE L2 3194 3270 -2 233 417 37 0 chr4 14184463 14184626 -170104036 - MIR SINE MIR -93 169 1 216 327 18 44 chr4 14185001 14185114 -170103548 - MIR SINE MIR -145 117 8 422 285 161 15 chr4 14185493 14185712 -170102950 - MIR SINE MIR -7 255 5 408 298 78 41 chr4 14185723 14185965 -170102697 - MIR SINE MIR -6 256 6 450 318 73 30 chr4 14187355 14187588 -170101074 + MIR SINE MIR 8 250 -12 189 0 0 0 chr4 14187661 14187682 -170100980 + (ATG)n Simple_repeat Simple_repeat 3 23 0 255 143 41 0 chr4 14188053 14188102 -170100560 - MER94 DNA DNA -79 55 5 336 284 45 32 chr4 14188879 14189034 -170099628 + L1MB8 LINE L1 5785 5941 -237 22 0 0 0 chr4 14189165 14189187 -170099475 + AT_rich Low_complexity Low_complexity 1 22 0 2840 7 0 0 chr4 14189680 14189987 -170098675 + AluYb8 SINE Alu 1 307 -11 1510 122 36 0 chr4 14190114 14190336 -170098326 - MER30 DNA MER1_type 0 230 1 1941 144 0 43 chr4 14190929 14191255 -170097407 - AluSx SINE Alu 0 312 1 635 311 18 18 chr4 14191398 14191626 -170097036 - MIR SINE MIR -5 257 30 417 54 0 0 chr4 14191966 14192022 -170096640 + (TG)n Simple_repeat Simple_repeat 1 56 0 281 269 39 13 chr4 14192113 14192191 -170096471 - MIR SINE MIR -96 166 87 235 371 75 33 chr4 14192865 14193078 -170095584 - MIR SINE MIR -23 239 18 351 78 0 0 chr4 14193667 14193718 -170094944 + (TG)n Simple_repeat Simple_repeat 2 52 0 1323 178 43 11 chr4 14194056 14194332 -170094330 - L1PB4 LINE L1 -1 6155 5871 506 77 26 0 chr4 14194882 14194960 -170093702 + MADE1 DNA Mariner 1 80 0 1119 271 65 36 chr4 14195183 14195703 -170092959 + L1M4 LINE L1 16 550 -5992 1359 248 31 56 chr4 14195703 14196182 -170092480 - MLT1D LTR MaLR -38 467 1 1949 198 30 51 chr4 14196182 14196688 -170091974 + L1MB7 LINE L1 5614 6108 -76 2370 89 0 10 chr4 14196688 14196992 -170091670 + AluSq SINE Alu 3 303 -10 1949 198 30 51 chr4 14196992 14197057 -170091605 + L1MB7 LINE L1 6108 6173 -11 305 308 39 19 chr4 14197299 14197403 -170091259 - MIR SINE MIR -150 112 7 234 156 0 0 chr4 14197463 14197508 -170091154 + (CAA)n Simple_repeat Simple_repeat 1 45 0 2055 120 3 0 chr4 14198132 14198438 -170090224 + AluSx SINE Alu 1 307 0 208 0 0 0 chr4 14198415 14198466 -170090196 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr4 14198466 14198487 -170090175 + AT_rich Low_complexity Low_complexity 1 21 0 448 317 144 5 chr4 14199005 14199213 -170089449 + MIR SINE MIR 25 261 -1 1293 120 6 0 chr4 14199270 14199479 -170089183 - AluSg/x SINE Alu 0 318 109 2373 98 0 0 chr4 14199626 14199933 -170088729 + AluSx SINE Alu 1 307 -5 1261 226 57 57 chr4 14199990 14200495 -170088167 + MLT1D LTR MaLR 1 505 0 2198 122 0 0 chr4 14200667 14200970 -170087692 + AluSg SINE Alu 1 303 -7 227 380 103 5 chr4 14201946 14202130 -170086532 - MIR SINE MIR -16 246 45 383 226 94 66 chr4 14202382 14202670 -170085992 - L1MC5 LINE L1 -55 7906 7611 327 256 202 76 chr4 14202952 14203190 -170085472 - L1MC4 LINE L1 -1041 7001 6734 451 309 95 84 chr4 14203241 14203755 -170084907 - L1MC4a LINE L1 -1213 6595 6076 1980 299 61 17 chr4 14203884 14204668 -170083994 - L2 LINE L2 -1178 2136 1318 218 330 107 0 chr4 14205686 14205798 -170082864 + MIR SINE MIR 82 205 -57 205 271 0 43 chr4 14205894 14205964 -170082698 + A-rich Low_complexity Low_complexity 3 69 0 2144 177 48 62 chr4 14205986 14206595 -170082067 + L1MD3 LINE L1 7396 7995 0 277 329 27 14 chr4 14206591 14206810 -170081852 + L1ME1 LINE L1 5601 5822 -299 * 342 242 137 22 chr4 14206819 14207001 -170081661 + L1ME1 LINE L1 5959 6161 -5 345 347 103 14 chr4 14207333 14207546 -170081116 + MIR SINE MIR 4 235 -27 234 150 0 0 chr4 14207587 14207627 -170081035 + (TTA)n Simple_repeat Simple_repeat 2 41 0 269 308 51 34 chr4 14208018 14208135 -170080527 + MIR3 SINE MIR 15 133 -75 294 29 0 0 chr4 14208800 14208835 -170079827 + (TG)n Simple_repeat Simple_repeat 1 35 0 323 215 97 11 chr4 14209201 14209294 -170079368 + MLT1I LTR MaLR 305 405 -4 527 128 0 0 chr4 14209676 14209754 -170078908 + FRAM SINE Alu 22 99 -77 233 309 91 51 chr4 14209784 14209959 -170078703 - L2 LINE L2 -180 3133 2952 403 301 147 6 chr4 14210191 14210347 -170078315 - MER45A DNA AcHobo 0 178 1 393 300 69 6 chr4 14210568 14210728 -170077934 + MIR SINE MIR 20 189 -73 2708 69 11 0 chr4 14211328 14211676 -170076986 + L1PA7 LINE L1 5799 6150 -4 298 310 122 35 chr4 14211760 14211989 -170076673 - L2 LINE L2 -454 2860 2612 640 269 88 63 chr4 14212063 14212301 -170076361 - MIR SINE MIR -1 261 18 1148 129 5 10 chr4 14212430 14212623 -170076039 - L1PB2 LINE L1 -2 6149 5958 1009 189 4 37 chr4 14212796 14213089 -170075573 - MLT1C LTR MaLR 0 467 120 725 217 12 0 chr4 14213245 14213411 -170075251 - MLT1B LTR MaLR -193 197 30 1930 137 126 8 chr4 14213420 14213792 -170074870 - MSTA LTR MaLR -12 416 1 1642 226 62 24 chr4 14213853 14214022 -170074640 + MLT1D LTR MaLR 23 184 -321 2088 139 10 0 chr4 14214022 14214331 -170074331 + AluSp SINE Alu 1 312 -1 1642 226 62 24 chr4 14214331 14214471 -170074191 + MLT1D LTR MaLR 184 317 -188 1213 104 19 160 chr4 14214471 14214585 -170074077 - MER30 DNA MER1_type 0 230 174 2100 145 6 6 chr4 14214585 14214896 -170073766 - AluSq SINE Alu -2 311 1 1213 104 19 160 chr4 14214896 14215049 -170073613 - MER30 DNA MER1_type -56 174 1 1642 226 62 24 chr4 14215049 14215203 -170073459 + MLT1D LTR MaLR 317 505 0 223 275 113 42 chr4 14215992 14216134 -170072528 + MIR SINE MIR 37 188 -74 258 322 83 8 chr4 14217154 14217275 -170071387 - MIR SINE MIR -76 186 57 287 339 62 5 chr4 14217570 14217762 -170070900 + L2 LINE L2 2467 2669 -645 398 351 27 27 chr4 14217883 14218179 -170070483 + MLT1J LTR MaLR 111 406 -105 1391 252 67 39 chr4 14218521 14218986 -170069676 + MLT2F LTR ERVL 186 663 0 856 214 70 41 chr4 14219006 14219249 -170069413 - MIR SINE MIR 0 262 13 188 421 40 16 chr4 14219380 14219506 -170069156 - L2 LINE L2 -11 3261 3133 492 221 0 10 chr4 14219773 14219877 -170068785 + MER5A DNA MER1_type 4 106 -83 462 316 135 5 chr4 14219904 14220119 -170068543 + MIR SINE MIR 15 257 -5 1398 313 86 48 chr4 14220745 14221949 -170066713 + L2 LINE L2 2042 3303 -10 329 333 8 17 chr4 14222457 14222577 -170066085 + L2 LINE L2 3194 3312 -1 21 0 0 0 chr4 14222946 14222967 -170065695 + AT_rich Low_complexity Low_complexity 1 21 0 2200 137 63 31 chr4 14223146 14223561 -170065101 + MSTA LTR MaLR 1 428 0 191 189 19 0 chr4 14223844 14223897 -170064765 + (TAA)n Simple_repeat Simple_repeat 1 54 0 362 361 68 5 chr4 14224259 14224637 -170064025 - L2 LINE L2 0 3313 2830 335 299 123 0 chr4 14225101 14225255 -170063407 - MIR SINE MIR -17 245 73 188 254 127 0 chr4 14225927 14225982 -170062680 - MIR3 SINE MIR -29 179 118 435 352 101 18 chr4 14226063 14226282 -170062380 + MIR SINE MIR 20 256 -6 1378 204 20 56 chr4 14226419 14226812 -170061850 - MLT1C LTR MaLR -8 459 81 2055 140 0 16 chr4 14226817 14227132 -170061530 - AluSg SINE Alu 0 310 1 365 187 28 49 chr4 14227156 14227184 -170061478 - MLT1C LTR MaLR -266 124 97 2026 33 4 0 chr4 14227184 14227429 -170061233 - L1PA5 LINE L1 0 6154 5909 365 187 28 49 chr4 14227429 14227521 -170061141 - MLT1C LTR MaLR -293 97 6 253 308 29 29 chr4 14227526 14227630 -170061032 + L2 LINE L2 3168 3271 -1 1607 176 36 6 chr4 14228635 14228965 -170059697 - MLT1B LTR MaLR -44 346 7 335 313 72 56 chr4 14228966 14229215 -170059447 + L2 LINE L2 3009 3261 -52 247 362 91 26 chr4 14229210 14229638 -170059024 + L2 LINE L2 1963 2418 -896 * 14070 37 2 0 chr4 14229838 14232319 -170056343 + L1PA5 LINE L1 3664 6148 -6 327 78 0 0 chr4 14232345 14232396 -170056266 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 838 245 13 8 chr4 14232666 14232971 -170055691 + LTR16A LTR ERVL 89 437 -13 229 360 30 0 chr4 14232983 14233083 -170055579 + L2 LINE L2 2928 3030 -242 1912 232 17 17 chr4 14233238 14233716 -170054946 - MLT1E2 LTR MaLR -1 625 148 210 313 70 17 chr4 14235345 14235460 -170053202 - L2 LINE L2 -1 3271 3151 790 193 29 63 chr4 14235558 14235765 -170052897 - MER3 DNA MER1_type -8 201 2 268 335 30 36 chr4 14235785 14235952 -170052710 - L2 LINE L2 -225 3047 2882 233 276 78 43 chr4 14236301 14236417 -170052245 - L2 LINE L2 -557 2757 2638 352 268 20 85 chr4 14237336 14237467 -170051195 + MIR SINE MIR 86 206 -56 763 274 54 12 chr4 14237467 14237708 -170050954 + MIR SINE MIR 2 252 -10 1756 109 0 60 chr4 14237898 14238163 -170050499 - AluSq SINE Alu -64 249 1 244 281 92 37 chr4 14238369 14238697 -170049965 + HAL1 LINE L1 1001 1346 -1161 2021 234 31 70 chr4 14238700 14239432 -170049230 + L1ME1 LINE L1 5429 6132 -34 2063 152 0 0 chr4 14239549 14239852 -170048810 + AluSx SINE Alu 1 303 -9 405 228 175 23 chr4 14239867 14240114 -170048548 + HAL1b LINE L1 376 1744 -763 1856 152 10 3 chr4 14240310 14240438 -170048224 + AluSx SINE Alu 1 127 -185 369 0 0 0 chr4 14240438 14240479 -170048183 + (CA)n Simple_repeat Simple_repeat 2 42 0 1856 152 10 3 chr4 14240479 14240660 -170048002 + AluSx SINE Alu 127 312 0 2888 195 29 7 chr4 14241501 14242096 -170046566 - MER73 LTR ERVL -2 642 35 242 325 39 0 chr4 14242313 14242390 -170046272 - L2 LINE L2 -2 3311 3232 461 316 75 0 chr4 14243472 14243659 -170045003 - MIR SINE MIR -36 226 26 410 308 68 12 chr4 14243795 14243985 -170044677 + MIR SINE MIR 36 235 -27 26 0 0 0 chr4 14244584 14244610 -170044052 + AT_rich Low_complexity Low_complexity 1 26 0 693 262 97 17 chr4 14244661 14244898 -170043764 + MIR SINE MIR 7 262 0 254 281 55 31 chr4 14245129 14245257 -170043405 - MLT1K LTR MaLR -290 298 168 1216 249 140 25 chr4 14245261 14245667 -170042995 + MLT1D LTR MaLR 1 453 -52 22 0 0 0 chr4 14245875 14245897 -170042765 + AT_rich Low_complexity Low_complexity 1 22 0 186 237 136 51 chr4 14247620 14247738 -170040924 - MIR SINE MIR -26 236 109 622 252 35 70 chr4 14248812 14249070 -170039592 - MER112 DNA MER1_type -8 252 4 198 333 156 0 chr4 14249741 14249837 -170038825 + MIR SINE MIR 9 119 -143 415 274 61 33 chr4 14250123 14250335 -170038327 + LTR16B LTR ERVL 247 464 0 2865 299 52 8 chr4 14250339 14251236 -170037426 + L2 LINE L2 2112 3074 -239 2074 140 21 56 chr4 14251236 14251614 -170037048 + MLT1A1 LTR MaLR 1 365 0 2865 299 52 8 chr4 14251614 14251866 -170036796 + L2 LINE L2 3074 3313 0 267 274 98 20 chr4 14251866 14251968 -170036694 + MIR SINE MIR 138 247 -15 342 336 13 97 chr4 14252395 14252711 -170035951 - L2 LINE L2 -9 3304 3019 225 224 0 0 chr4 14252914 14252972 -170035690 + (TA)n Simple_repeat Simple_repeat 2 59 0 196 0 118 0 chr4 14253038 14253072 -170035590 + A-rich Low_complexity Low_complexity 3 40 0 5682 112 5 5 chr4 14253082 14254447 -170034215 - L1PA14 LINE L1 -12 6149 4775 1084 246 102 35 chr4 14255103 14255445 -170033217 - MLT1A1 LTR MaLR 0 365 1 25 65 0 0 chr4 14255446 14255492 -170033170 + AT_rich Low_complexity Low_complexity 1 46 0 559 274 117 54 chr4 14256669 14257020 -170031642 - MLT1J1 LTR MaLR -8 438 66 297 356 84 10 chr4 14257163 14257365 -170031297 + MIR SINE MIR 21 237 -25 24 32 0 0 chr4 14257441 14257472 -170031190 + AT_rich Low_complexity Low_complexity 1 31 0 216 301 73 32 chr4 14257738 14257861 -170030801 - MIR SINE MIR -12 250 123 1826 281 77 17 chr4 14258182 14258940 -170029722 + L1MC4 LINE L1 7098 7900 -142 303 241 0 13 chr4 14259037 14259116 -170029546 + L1MC4 LINE L1 7914 7991 -51 249 325 145 20 chr4 14259179 14259379 -170029283 - MIR SINE MIR -2 260 36 1966 107 4 0 chr4 14259552 14259814 -170028848 - AluSx SINE Alu -8 304 42 202 329 175 15 chr4 14259891 14260028 -170028634 - L2 LINE L2 -86 3186 3028 186 43 0 0 chr4 14260185 14260208 -170028454 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 195 129 0 0 chr4 14260989 14261020 -170027642 + (A)n Simple_repeat Simple_repeat 1 31 0 230 192 0 0 chr4 14261282 14261334 -170027328 - L1MC4 LINE L1 -1338 6704 6653 190 270 0 90 chr4 14261864 14261953 -170026709 - MIR SINE MIR -71 137 57 214 287 55 67 chr4 14262153 14262317 -170026345 + MIR3 SINE MIR 32 193 -15 582 109 0 0 chr4 14262591 14262683 -170025979 + (TA)n Simple_repeat Simple_repeat 1 92 0 306 0 0 0 chr4 14262682 14262716 -170025946 + (GA)n Simple_repeat Simple_repeat 2 35 0 * 1959 122 49 7 chr4 14263226 14263514 -170025148 - AluSx SINE Alu -12 300 1 315 179 0 0 chr4 14263952 14264008 -170024654 + L1MC4 LINE L1 6648 6703 -1339 293 223 0 43 chr4 14264023 14264117 -170024545 + L1MC4 LINE L1 6615 6704 -1338 237 108 0 0 chr4 14264174 14264211 -170024451 + (TA)n Simple_repeat Simple_repeat 2 38 0 517 291 71 11 chr4 14264356 14264538 -170024124 + MIR SINE MIR 64 256 -6 969 216 15 29 chr4 14264682 14264886 -170023776 + MER20 DNA MER1_type 1 201 -18 212 256 0 0 chr4 14265245 14265288 -170023374 - L2 LINE L2 -9 3304 3262 1204 198 117 24 chr4 14265294 14265465 -170023197 - MLT1A1 LTR MaLR 0 365 211 315 0 0 0 chr4 14265465 14265500 -170023162 + (GA)n Simple_repeat Simple_repeat 1 35 0 1204 198 117 24 chr4 14265500 14265662 -170023000 - MLT1A1 LTR MaLR -154 211 1 236 230 46 23 chr4 14265663 14265750 -170022912 - L2 LINE L2 -66 3247 3159 191 338 127 25 chr4 14265779 14265936 -170022726 - L2 LINE L2 -254 3059 2887 472 189 78 89 chr4 14267369 14267560 -170021102 + MER53 DNA DNA 1 189 0 34 24 0 0 chr4 14268012 14268053 -170020609 + AT_rich Low_complexity Low_complexity 1 41 0 6957 140 28 4 chr4 14268053 14270207 -170018455 - L1MA3 LINE L1 0 7724 5514 * 10180 138 42 8 chr4 14270202 14271839 -170016823 - L1MA3 LINE L1 -4770 2795 1103 632 143 59 17 chr4 14271833 14271952 -170016710 - L1MA3 LINE L1 -7430 135 12 * 419 171 0 13 chr4 14272530 14272606 -170016056 + MLT1A1 LTR MaLR 289 363 -2 2032 176 17 66 chr4 14273038 14273448 -170015214 + MLT1B LTR MaLR 1 390 0 414 224 67 104 chr4 14273978 14274246 -170014416 - L1MC4 LINE L1 -1040 7002 6745 2464 55 0 16 chr4 14274880 14275192 -170013470 - AluY SINE Alu -4 307 1 1475 199 33 7 chr4 14276127 14276610 -170012052 - AluJb SINE Alu 0 491 1 1373 206 30 43 chr4 14276629 14276809 -170011853 - AluJo SINE Alu -13 299 123 189 0 0 0 chr4 14276809 14276830 -170011832 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1373 206 30 43 chr4 14276830 14276950 -170011712 - AluJo SINE Alu -189 123 3 2181 233 68 70 chr4 14276955 14277469 -170011193 - L1ME1 LINE L1 -51 6115 5601 4397 123 11 51 chr4 14277469 14277490 -170011172 + L1PA13 LINE L1 5470 5490 -673 1633 110 125 26 chr4 14277490 14277754 -170010908 + AluSg1 SINE Alu 5 294 -15 4397 123 11 51 chr4 14277754 14278455 -170010207 + L1PA13 LINE L1 5490 6163 0 2181 233 68 70 chr4 14278455 14278746 -170009916 - L1ME1 LINE L1 -565 5601 5311 2101 103 0 0 chr4 14278809 14279082 -170009580 - AluSc SINE Alu -32 277 5 448 271 159 0 chr4 14279206 14279357 -170009305 - MER5A DNA MER1_type -6 183 9 624 230 25 25 chr4 14279946 14280107 -170008555 + Charlie7 DNA MER1_type 25 185 -2427 455 291 167 40 chr4 14280120 14280574 -170008088 - L2 LINE L2 -952 2362 1851 395 277 121 47 chr4 14280695 14281124 -170007538 - L1ME4a LINE L1 -44 6077 5617 308 250 33 11 chr4 14281381 14281473 -170007189 + GA-rich Low_complexity Low_complexity 1 94 0 2166 134 42 22 chr4 14281495 14281852 -170006810 + THE1B LTR MaLR 1 364 0 206 162 27 0 chr4 14282525 14282562 -170006100 + GA-rich Low_complexity Low_complexity 4 41 0 2494 69 3 0 chr4 14283026 14283332 -170005330 + AluSg SINE Alu 1 307 -3 266 380 33 7 chr4 14284416 14284566 -170004096 + MIR3 SINE MIR 49 202 -6 2374 90 6 0 chr4 14285487 14285798 -170002864 + AluSp SINE Alu 1 313 0 192 77 0 0 chr4 14285811 14285837 -170002825 + (CTA)n Simple_repeat Simple_repeat 2 27 0 646 19 102 0 chr4 14285939 14286145 -170002517 + (TA)n Simple_repeat Simple_repeat 1 226 0 2165 256 55 12 chr4 14286194 14286753 -170001909 - MLT1E LTR MaLR -4 589 7 1114 301 101 26 chr4 14287048 14287655 -170001007 + L3 LINE CR1 807 1458 -119 183 303 124 0 chr4 14287662 14287751 -170000911 - L2 LINE L2 0 3272 3173 355 269 233 47 chr4 14287796 14288049 -170000613 - MLT1I LTR MaLR -17 392 93 183 80 0 0 chr4 14289019 14289044 -169999618 + (TTG)n Simple_repeat Simple_repeat 3 27 0 424 265 30 15 chr4 14289408 14289540 -169999122 - MIR SINE MIR -16 246 113 1368 273 46 71 chr4 14289545 14290007 -169998655 + L1ME3A LINE L1 5258 5695 -475 2151 216 29 79 chr4 14290007 14290590 -169998072 - MLT2B3 LTR ERVL 0 554 1 1368 273 46 71 chr4 14290590 14290885 -169997777 + L1ME3A LINE L1 5695 5996 -174 1096 269 43 41 chr4 14291502 14291655 -169997007 + HsTC2 DNA Tc2 2 153 -1745 1953 233 78 50 chr4 14291655 14291758 -169996904 + MLT1E LTR MaLR 3 102 -491 2246 107 17 0 chr4 14291758 14292056 -169996606 - AluSx SINE Alu -9 303 1 1953 233 78 50 chr4 14292056 14292527 -169996135 + MLT1E LTR MaLR 102 593 0 1096 269 43 41 chr4 14292527 14292787 -169995875 + HsTC2 DNA Tc2 153 419 -1479 1757 198 7 70 chr4 14292787 14293201 -169995461 - MLT1B LTR MaLR 0 390 3 1096 269 43 41 chr4 14293201 14293229 -169995433 + HsTC2 DNA Tc2 419 445 -1453 430 171 0 13 chr4 14293203 14293279 -169995383 - MLT1D LTR MaLR -426 79 5 * 2026 59 0 0 chr4 14293296 14293532 -169995130 + L1PA5 LINE L1 5912 6147 -7 29 60 0 0 chr4 14294040 14294090 -169994572 + AT_rich Low_complexity Low_complexity 1 50 0 1616 188 59 19 chr4 14294259 14294583 -169994079 + MER1B DNA MER1_type 1 337 0 406 264 192 0 chr4 14294766 14294891 -169993771 - MIR SINE MIR -94 168 20 210 279 73 29 chr4 14295638 14295706 -169992956 + L2 LINE L2 3160 3230 -42 2814 81 16 14 chr4 14296505 14296899 -169991763 + L1PA10 LINE L1 5770 6163 -5 226 313 17 35 chr4 14297377 14297492 -169991170 + L2 LINE L2 3155 3267 -5 760 226 53 5 chr4 14297924 14298114 -169990548 - ORSL DNA AcHobo 0 275 77 187 243 29 86 chr4 14299171 14299241 -169989421 + MIR3 SINE MIR 104 169 -39 * 494 259 46 38 chr4 14299240 14299371 -169989291 + MIR SINE MIR 11 142 -120 207 392 31 0 chr4 14299621 14299718 -169988944 + L2 LINE L2 3153 3252 -20 197 229 217 0 chr4 14299748 14299831 -169988831 - MIR3 SINE MIR -41 167 67 270 0 0 0 chr4 14301529 14301559 -169987103 + (A)n Simple_repeat Simple_repeat 1 30 0 216 200 0 0 chr4 14302219 14302274 -169986388 + CT-rich Low_complexity Low_complexity 2 56 0 187 286 24 24 chr4 14305353 14305437 -169983225 + MIR SINE MIR 69 152 -110 24 0 0 0 chr4 14305815 14305839 -169982823 + AT_rich Low_complexity Low_complexity 1 24 0 220 256 47 47 chr4 14305974 14306060 -169982602 + L2 LINE L2 3187 3272 0 188 356 40 0 chr4 14306074 14306175 -169982487 - MIR SINE MIR -77 185 81 250 304 11 11 chr4 14306608 14306700 -169981962 + LTR67 LTR ERVL 428 519 -38 578 271 82 79 chr4 14306984 14307324 -169981338 - MER102b DNA MER1_type 0 341 1 494 275 40 40 chr4 14307508 14307708 -169980954 - L2 LINE L2 -1 3312 3113 241 304 89 45 chr4 14307938 14308050 -169980612 - L2 LINE L2 -17 3255 3139 957 88 15 0 chr4 14308153 14308290 -169980372 - AluSp/q SINE Alu -2 311 173 27 73 0 0 chr4 14308420 14308475 -169980187 + AT_rich Low_complexity Low_complexity 1 55 0 261 196 144 62 chr4 14308786 14308883 -169979779 + L2 LINE L2 3162 3266 -47 202 293 40 30 chr4 14309262 14309361 -169979301 - MIR SINE MIR -107 155 56 727 194 94 0 chr4 14310093 14310263 -169978399 + MER53 DNA DNA 4 189 0 209 362 41 15 chr4 14311161 14311357 -169977305 + MIR SINE MIR 37 237 -25 1881 94 11 0 chr4 14311547 14311813 -169976849 - L1PA8 LINE L1 0 6172 5904 278 248 7 60 chr4 14311977 14312126 -169976536 + GA-rich Low_complexity Low_complexity 1 141 0 255 320 65 20 chr4 14312724 14312877 -169975785 + MIR SINE MIR 94 253 -9 289 253 58 23 chr4 14313113 14313200 -169975462 - MLT1L LTR MaLR -325 290 201 192 316 61 26 chr4 14313596 14313710 -169974952 + MIR SINE MIR 6 123 -139 192 341 32 41 chr4 14313773 14313896 -169974766 + L2 LINE L2 3187 3308 -5 324 299 128 48 chr4 14314381 14314632 -169974030 + MLT1I LTR MaLR 40 310 -99 217 358 159 6 chr4 14315764 14315940 -169972722 - MIR SINE MIR -13 249 47 203 304 0 0 chr4 14316859 14316915 -169971747 + (CA)n Simple_repeat Simple_repeat 1 56 0 481 214 89 9 chr4 14317042 14317154 -169971508 + 5S rRNA rRNA 1 121 0 1483 226 19 19 chr4 14318023 14318386 -169970276 - MLT1A1 LTR MaLR 0 365 3 203 306 41 20 chr4 14318930 14319028 -169969634 - MIR3 SINE MIR -104 104 5 523 278 37 49 chr4 14319136 14319381 -169969281 - MIR SINE MIR -1 261 20 25 31 0 0 chr4 14319430 14319462 -169969200 + AT_rich Low_complexity Low_complexity 1 32 0 217 258 72 10 chr4 14319977 14320074 -169968588 + L2 LINE L2 3199 3301 -12 2171 106 0 3 chr4 14320281 14320592 -169968070 - AluSg SINE Alu 0 310 1 396 296 66 18 chr4 14321203 14321429 -169967233 + MER102a DNA MER1_type 94 330 0 1443 223 13 56 chr4 14321494 14321885 -169966777 - MLT1A2 LTR MaLR 0 374 1 198 311 82 16 chr4 14322053 14322175 -169966487 + MIR3 SINE MIR 34 163 -45 235 273 0 81 chr4 14322866 14322965 -169965697 - MIR SINE MIR 0 262 172 295 308 185 8 chr4 14323338 14323468 -169965194 + MER5A DNA MER1_type 36 188 -1 395 316 76 6 chr4 14324704 14324875 -169963787 - MIR SINE MIR -7 255 73 183 307 99 10 chr4 14324955 14325056 -169963606 + MIR SINE MIR 134 243 -19 189 281 37 37 chr4 14325634 14325716 -169962946 - L2 LINE L2 -5 3267 3186 414 182 40 97 chr4 14326751 14326853 -169961809 + Charlie5 DNA MER1_type 2362 2451 -173 1972 154 0 17 chr4 14326853 14327152 -169961510 + AluSx SINE Alu 1 294 -18 414 182 40 97 chr4 14327152 14327225 -169961437 + Charlie5 DNA MER1_type 2451 2527 -97 458 211 41 8 chr4 14327273 14327396 -169961266 - MIR SINE MIR -59 203 77 248 221 73 0 chr4 14327972 14328040 -169960622 - L1MC4 LINE L1 -1330 6712 6640 187 227 30 0 chr4 14328075 14328141 -169960521 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 213 224 0 0 chr4 14328607 14328665 -169959997 + (CA)n Simple_repeat Simple_repeat 1 58 0 2306 92 14 0 chr4 14329559 14329854 -169958808 + AluSp SINE Alu 1 299 -14 307 215 0 0 chr4 14330171 14330236 -169958426 - MLT1H LTR MaLR -17 532 468 * 452 212 166 72 chr4 14330235 14330428 -169958234 - MLT1H LTR MaLR -228 321 111 1105 200 95 46 chr4 14330637 14330962 -169957700 + MER58B DNA MER1_type 1 341 0 318 237 42 17 chr4 14333468 14333586 -169955076 - MIR SINE MIR -58 204 84 2279 117 0 0 chr4 14335427 14335735 -169952927 + AluSg SINE Alu 1 308 -2 22 0 0 0 chr4 14335735 14335757 -169952905 + AT_rich Low_complexity Low_complexity 1 22 0 244 303 173 12 chr4 14336278 14336440 -169952222 - MIR SINE MIR 0 262 75 262 327 73 9 chr4 14336902 14337012 -169951650 + MIR SINE MIR 25 141 -67 807 259 51 121 chr4 14337212 14337699 -169950963 + LTR16A1 LTR ERVL 1 453 -4 209 298 0 35 chr4 14338085 14338142 -169950520 + L2 LINE L2 3206 3260 -12 193 339 113 11 chr4 14338458 14338635 -169950027 - L3 LINE CR1 -111 1466 1272 430 298 29 12 chr4 14338636 14338807 -169949855 + MIR SINE MIR 7 180 -82 571 255 7 21 chr4 14338970 14339111 -169949551 - MIR SINE MIR -63 199 61 1310 251 92 59 chr4 14339283 14339857 -169948805 + MLT1E LTR MaLR 1 593 0 207 329 37 0 chr4 14340102 14340184 -169948478 - MIR3 SINE MIR -23 185 101 678 244 227 31 chr4 14340427 14340779 -169947883 - MLT1G LTR MaLR 0 590 170 2793 157 10 40 chr4 14342023 14342527 -169946135 - Tigger5 DNA MER2_type 0 2323 1835 1146 219 0 5 chr4 14342531 14342741 -169945921 - Tigger5 DNA MER2_type -2112 211 3 327 246 31 0 chr4 14342747 14342812 -169945850 + MER21B LTR ERV1 23 89 -774 3007 6 0 0 chr4 14342893 14343210 -169945452 - AluYb8 SINE Alu -1 317 1 1134 237 26 82 chr4 14343211 14343553 -169945109 + MER21B LTR ERV1 105 427 -436 * 1575 171 8 8 chr4 14343530 14343794 -169944868 - MSTD LTR MaLR -132 264 1 5459 236 71 75 chr4 14343794 14345535 -169943127 - MSTD-int LTR MaLR 0 1735 2 1902 199 65 0 chr4 14345537 14345909 -169942753 - MSTD LTR MaLR 0 396 1 1181 250 30 31 chr4 14345913 14346277 -169942385 + MER21B LTR ERV1 466 803 -4 43385 36 21 1 chr4 14346432 14352462 -169936200 + L1PA2 LINE L1 3 6155 0 1821 218 35 11 chr4 14352833 14353287 -169935375 + L1MB4 LINE L1 5710 6174 -6 279 133 0 0 chr4 14354106 14354151 -169934511 + (TA)n Simple_repeat Simple_repeat 2 46 0 1133 197 54 47 chr4 14354271 14354732 -169933930 - LTR55 LTR ERV -5 543 2 908 223 43 15 chr4 14354822 14355262 -169933400 - MLT1D LTR MaLR 0 505 3 181 265 0 0 chr4 14355631 14355665 -169932997 - L2 LINE L2 -85 3187 3154 1543 143 87 113 chr4 14355666 14356126 -169932536 - LTR7 LTR ERV1 -2 448 1 4113 174 34 4 chr4 14356169 14356881 -169931781 - ERVL LTR ERVL -1834 3930 3198 209 359 71 12 chr4 14357094 14357264 -169931398 + MIR SINE MIR 83 262 0 192 323 161 19 chr4 14357247 14357402 -169931260 + L2 LINE L2 2977 3153 -160 * 231 277 8 59 chr4 14358874 14358993 -169929669 + (CTGGGG)n Simple_repeat Simple_repeat 3 115 0 418 258 137 0 chr4 14359648 14359772 -169928890 + MIR SINE MIR 29 169 -93 945 199 184 14 chr4 14359935 14360212 -169928450 - MER33 DNA MER1_type 0 324 1 7067 16 9 0 chr4 14360313 14361108 -169927554 - L1PA2 LINE L1 -1 6154 5353 3806 22 0 7 chr4 14361109 14361566 -169927096 + L1PA2 LINE L1 4893 5346 -800 326 279 0 0 chr4 14362639 14362718 -169925944 - L2 LINE L2 -6 3307 3229 335 310 41 41 chr4 14362747 14362892 -169925770 + L2 LINE L2 3169 3313 0 302 355 8 8 chr4 14363042 14363163 -169925499 - MIR SINE MIR -131 131 11 336 167 0 0 chr4 14363367 14363439 -169925223 + GA-rich Low_complexity Low_complexity 3 74 0 203 275 43 14 chr4 14363938 14364007 -169924655 + MIR3 SINE MIR 104 174 -34 409 104 26 13 chr4 14364100 14364177 -169924485 + CT-rich Low_complexity Low_complexity 5 82 0 985 192 0 0 chr4 14364626 14364782 -169923880 - FRAM SINE Alu -21 155 1 236 191 21 0 chr4 14366551 14366598 -169922064 + L2 LINE L2 3261 3308 -5 716 262 41 0 chr4 14366702 14366874 -169921788 + MER97b DNA MER1_type? 1 179 -874 228 316 88 75 chr4 14367006 14367382 -169921280 - L2 LINE L2 0 3313 2933 2400 133 30 25 chr4 14367502 14367864 -169920798 + THE1B LTR MaLR 1 364 0 274 372 0 0 chr4 14368133 14368227 -169920435 - MIR3 SINE MIR -46 162 69 27 49 0 0 chr4 14368990 14369031 -169919631 + AT_rich Low_complexity Low_complexity 1 41 0 7102 167 45 25 chr4 14369330 14369654 -169919008 - Tigger2 DNA MER2_type 0 2718 2402 195 42 0 0 chr4 14369654 14369678 -169918984 + (GGA)n Simple_repeat Simple_repeat 3 26 0 7102 167 45 25 chr4 14369678 14369996 -169918666 - Tigger2 DNA MER2_type -316 2402 2092 198 0 0 0 chr4 14369996 14370018 -169918644 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 7102 167 45 25 chr4 14370018 14370675 -169917987 - Tigger2 DNA MER2_type -626 2092 1393 3399 163 27 13 chr4 14370671 14371291 -169917371 - Tigger2 DNA MER2_type -2089 629 1 * 209 300 0 17 chr4 14372481 14372541 -169916121 + L3 LINE CR1 1258 1316 -261 22 0 0 0 chr4 14372559 14372581 -169916081 + AT_rich Low_complexity Low_complexity 1 22 0 2584 84 14 11 chr4 14372894 14373262 -169915400 - L1P4 LINE L1 -401 5767 5399 1709 83 28 0 chr4 14373262 14373475 -169915187 + L1PA11 LINE L1 5951 6172 -2 272 281 90 0 chr4 14373481 14373570 -169915092 - LTR33 LTR ERVL -424 97 1 2168 140 53 31 chr4 14373671 14374027 -169914635 - THE1B LTR MaLR 0 364 1 338 290 46 8 chr4 14374391 14374522 -169914140 - MIR SINE MIR 0 262 127 1183 279 98 19 chr4 14374529 14374881 -169913781 + LTR16B LTR ERVL 8 400 -64 1334 223 65 46 chr4 14374881 14375248 -169913414 + MLT1A2 LTR MaLR 1 374 0 1183 279 98 19 chr4 14375248 14375315 -169913347 + LTR16B LTR ERVL 400 460 -4 290 320 70 6 chr4 14375712 14375868 -169912794 + MIR SINE MIR 67 232 -30 2526 71 0 0 chr4 14375890 14376201 -169912461 + AluY SINE Alu 1 311 0 359 314 90 16 chr4 14376758 14376946 -169911716 + MIR SINE MIR 49 250 -12 2394 105 0 3 chr4 14377550 14377864 -169910798 - AluSq SINE Alu 0 313 1 646 227 87 43 chr4 14378486 14378541 -169910121 + MIR SINE MIR 57 108 -154 1685 226 43 6 chr4 14378541 14378891 -169909771 + MLT1A1 LTR MaLR 1 363 -2 646 227 87 43 chr4 14378891 14379020 -169909642 + MIR SINE MIR 108 249 -13 308 296 125 11 chr4 14379131 14379307 -169909355 + MIR SINE MIR 25 220 -42 2372 90 0 10 chr4 14379309 14379621 -169909041 + AluY SINE Alu 1 309 -2 186 103 0 0 chr4 14379766 14379795 -169908867 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 349 318 41 35 chr4 14380406 14380576 -169908086 - MIR SINE MIR -76 186 16 1792 194 7 77 chr4 14381085 14381502 -169907160 + MLT1B LTR MaLR 1 388 -2 4315 174 6 17 chr4 14382185 14382969 -169905693 + L1MA8 LINE L1 5513 6288 -3 388 97 14 14 chr4 14383372 14383444 -169905218 + (TG)n Simple_repeat Simple_repeat 1 72 0 1626 186 133 16 chr4 14383537 14383919 -169904743 - MLT1C LTR MaLR -18 449 23 254 356 42 0 chr4 14383941 14384059 -169904603 + MIR SINE MIR 63 185 -77 239 279 0 23 chr4 14385128 14385214 -169903448 - L1MC4 LINE L1 -1339 6703 6620 313 280 133 7 chr4 14386201 14386344 -169902318 + MIR SINE MIR 8 168 -94 316 254 161 17 chr4 14387412 14387530 -169901132 - MIR SINE MIR -125 137 3 307 326 47 8 chr4 14387619 14387748 -169900914 - MIR SINE MIR -70 192 59 358 220 17 127 chr4 14388280 14388398 -169900264 + MIR SINE MIR 49 153 -109 403 321 102 63 chr4 14389669 14390330 -169898332 + L2 LINE L2 2567 3313 0 393 311 93 6 chr4 14390773 14390956 -169897706 + MIR SINE MIR 10 208 -54 203 307 114 23 chr4 14391023 14391111 -169897551 - MIR SINE MIR -136 126 31 187 316 75 128 chr4 14391627 14391893 -169896769 - L2 LINE L2 -34 3238 2987 1601 197 194 21 chr4 14392232 14392659 -169896003 + MLT1D LTR MaLR 5 505 0 267 283 43 43 chr4 14392671 14392798 -169895864 - MIR SINE MIR -62 146 25 228 86 0 0 chr4 14392949 14392984 -169895678 + (A)n Simple_repeat Simple_repeat 1 35 0 473 273 110 53 chr4 14393630 14393839 -169894823 + MLT1H LTR MaLR 326 546 -3 182 189 38 38 chr4 14393843 14393896 -169894766 + L2 LINE L2 1656 1708 -1606 189 239 22 0 chr4 14394981 14395027 -169893635 + L2 LINE L2 3267 3313 0 385 343 20 14 chr4 14395130 14395276 -169893386 - MIR SINE MIR -111 151 5 267 103 0 0 chr4 14395336 14395375 -169893287 + (A)n Simple_repeat Simple_repeat 1 39 0 472 287 94 33 chr4 14396123 14396187 -169892475 + MIR SINE MIR 5 64 -198 1793 242 125 21 chr4 14396187 14396770 -169891892 + LTR48B LTR ERV1 1 644 0 472 287 94 33 chr4 14396770 14396886 -169891776 + MIR SINE MIR 64 196 -66 507 325 142 30 chr4 14397456 14397893 -169890769 + L2 LINE L2 1901 2386 -928 24 0 0 0 chr4 14397980 14398004 -169890658 + AT_rich Low_complexity Low_complexity 1 24 0 205 341 57 11 chr4 14398916 14399004 -169889658 - MIR SINE MIR -140 122 31 27 49 0 0 chr4 14399293 14399334 -169889328 + AT_rich Low_complexity Low_complexity 1 41 0 297 294 33 0 chr4 14399479 14399571 -169889091 - MIR3 SINE MIR -8 200 106 193 373 13 0 chr4 14399968 14400043 -169888619 + MIR SINE MIR 18 93 -169 532 299 95 33 chr4 14400373 14400764 -169887898 - L1ME LINE L1 -352 5769 5355 355 311 165 12 chr4 14401025 14401189 -169887473 + MER5A DNA MER1_type 1 189 0 53 73 0 0 chr4 14401352 14401461 -169887201 + AT_rich Low_complexity Low_complexity 1 109 0 314 282 63 47 chr4 14401531 14401956 -169886706 - L1ME LINE L1 -1381 4765 4334 604 246 15 0 chr4 14402032 14402166 -169886496 - MLT1F1 LTR MaLR 0 593 458 371 125 16 16 chr4 14402180 14402244 -169886418 + L1M2 LINE L1 5685 5748 -543 766 183 172 11 chr4 14402252 14402438 -169886224 - L1PA16 LINE L1 -1 6165 5950 772 226 79 102 chr4 14402439 14402876 -169885786 - MLT1F1 LTR MaLR -138 455 1 319 302 10 0 chr4 14403958 14404054 -169884608 - L2 LINE L2 0 3313 3217 189 179 0 0 chr4 14404134 14404162 -169884500 - L2 LINE L2 -254 3059 3032 246 319 95 59 chr4 14404565 14404917 -169883745 + L2 LINE L2 2715 3075 -197 1330 213 18 18 chr4 14405052 14405338 -169883324 + AluJo SINE Alu 1 286 -26 258 255 88 20 chr4 14405352 14405454 -169883208 + L2 LINE L2 3200 3308 -5 1215 174 27 8 chr4 14405521 14405779 -169882883 - L1MA9 LINE L1 0 6312 6050 1038 162 112 20 chr4 14405781 14405958 -169882704 + MSTB LTR MaLR 3 200 -196 1920 183 85 10 chr4 14405958 14406356 -169882306 - MSTA LTR MaLR 0 428 1 1038 162 112 20 chr4 14406356 14406392 -169882270 + MSTB LTR MaLR 200 231 -165 7950 173 89 13 chr4 14406392 14407893 -169880769 - MSTA-int LTR MaLR -35 1616 1 2268 159 72 8 chr4 14407893 14408295 -169880367 - MSTA LTR MaLR 0 428 1 1120 172 64 5 chr4 14408300 14408503 -169880159 + MSTB LTR MaLR 212 426 0 3622 164 44 65 chr4 14408504 14408756 -169879906 - L1MA9 LINE L1 -259 6053 5797 1357 200 14 0 chr4 14408756 14409046 -169879616 - L1MA4 LINE L1 -6 6294 6001 3622 164 44 65 chr4 14409046 14409275 -169879387 - L1MA9 LINE L1 -515 5797 5565 1976 158 54 35 chr4 14409275 14409643 -169879019 + THE1C LTR MaLR 1 375 0 3622 164 44 65 chr4 14409643 14410238 -169878424 - L1MA9 LINE L1 -747 5565 5005 2722 236 32 0 chr4 14410236 14410945 -169877717 - L1MA9 LINE L1 -2251 3895 3164 * 523 154 0 0 chr4 14411117 14411195 -169877467 - MLT1C LTR MaLR 0 467 390 412 223 117 0 chr4 14411253 14411356 -169877306 + MLT1C LTR MaLR 1 115 -352 317 217 14 0 chr4 14411358 14411427 -169877235 + MLT1C LTR MaLR 398 467 0 340 362 41 23 chr4 14411587 14411808 -169876854 + MIR SINE MIR 12 236 -26 3233 67 10 0 chr4 14412620 14413036 -169875626 - THE1A-int LTR MaLR -1160 420 1 1787 153 7 4 chr4 14413341 14413622 -169875040 - THE1A LTR MaLR -2 353 72 6749 105 0 0 chr4 14413624 14414507 -169874155 + THE1B-int LTR MaLR 698 1580 0 2276 159 5 24 chr4 14414507 14414878 -169873784 + THE1B LTR MaLR 1 364 0 812 292 111 50 chr4 14414884 14415177 -169873485 - L2 LINE L2 -216 3097 2823 288 111 0 0 chr4 14415177 14415222 -169873440 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 1673 169 7 0 chr4 14415229 14415508 -169873154 - AluJo SINE Alu -21 291 11 812 292 111 50 chr4 14415508 14415743 -169872919 - L2 LINE L2 -495 2818 2534 182 250 125 16 chr4 14415776 14415840 -169872822 + MIR SINE MIR 171 241 -21 350 262 19 28 chr4 14415927 14415958 -169872704 + CT-rich Low_complexity Low_complexity 2 32 -75 1906 122 22 0 chr4 14415958 14416229 -169872433 - AluSq SINE Alu -13 300 24 350 262 19 28 chr4 14416229 14416304 -169872358 + CT-rich Low_complexity Low_complexity 32 107 0 435 320 59 39 chr4 14416329 14416585 -169872077 + MIR SINE MIR 2 262 0 285 335 45 80 chr4 14416676 14416876 -169871786 - L2 LINE L2 -94 3178 2986 984 211 36 10 chr4 14417559 14417753 -169870909 - MER58A DNA MER1_type 0 224 26 1502 258 47 47 chr4 14418176 14418707 -169869955 + MLT1H1 LTR MaLR 17 547 -8 222 191 43 21 chr4 14418899 14418946 -169869716 + L2 LINE L2 3023 3070 -202 337 277 12 0 chr4 14419284 14419367 -169869295 - MLT1I LTR MaLR -15 394 311 455 241 105 37 chr4 14419477 14419668 -169868994 - MLT1J2 LTR MaLR -227 223 20 893 211 32 11 chr4 14419872 14420057 -169868605 + MER20 DNA MER1_type 30 218 -1 282 330 70 55 chr4 14420087 14420287 -169868375 - MLT1I LTR MaLR -204 345 143 629 289 80 22 chr4 14420475 14420700 -169867962 + MIR SINE MIR 12 249 -13 400 293 50 20 chr4 14420920 14421118 -169867544 + L3 LINE CR1 1221 1424 -153 298 255 83 78 chr4 14421196 14421388 -169867274 - LTR16C LTR ERVL -104 387 195 238 364 34 0 chr4 14421889 14421977 -169866685 + MIR SINE MIR 80 170 -92 303 322 14 28 chr4 14422269 14422412 -169866250 + MIR3 SINE MIR 62 202 -6 2133 138 21 58 chr4 14422418 14422487 -169866175 - THE1B LTR MaLR 0 364 294 1986 134 7 0 chr4 14422487 14422814 -169865848 - AluSq SINE Alu 0 329 1 2133 138 21 58 chr4 14422814 14423121 -169865541 - THE1B LTR MaLR -70 294 1 262 214 43 29 chr4 14424787 14424857 -169863805 - MIR3 SINE MIR -48 160 90 29 0 0 0 chr4 14425120 14425149 -169863513 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr4 14425570 14425590 -169863072 + (T)n Simple_repeat Simple_repeat 1 20 0 252 0 0 0 chr4 14425723 14425751 -169862911 + (T)n Simple_repeat Simple_repeat 1 28 0 251 296 0 0 chr4 14425768 14425822 -169862840 + L2 LINE L2 3210 3263 -9 345 215 51 0 chr4 14426556 14426635 -169862027 + MER103 DNA DNA 17 99 -67 435 323 64 48 chr4 14427174 14427668 -169860994 - L2 LINE L2 -7 3265 2780 432 0 0 0 chr4 14427668 14427716 -169860946 + (TAA)n Simple_repeat Simple_repeat 2 49 0 435 323 64 48 chr4 14427716 14427748 -169860914 - L2 LINE L2 -492 2780 1960 332 362 59 0 chr4 14428037 14428189 -169860473 + MIR3 SINE MIR 21 181 -27 990 289 179 18 chr4 14428472 14428919 -169859743 - MLT1F LTR MaLR -2 540 22 289 185 0 19 chr4 14429642 14429696 -169858966 + MLT1F1 LTR MaLR 69 121 -446 805 207 72 121 chr4 14429697 14430060 -169858602 + MLT1F1 LTR MaLR 223 567 0 383 254 39 15 chr4 14430064 14430194 -169858468 + MER113 DNA MER1_type? 61 193 -328 301 329 56 14 chr4 14430263 14430406 -169858256 + MIR3 SINE MIR 20 168 -40 180 111 0 0 chr4 14430447 14430474 -169858188 + (TAA)n Simple_repeat Simple_repeat 2 28 0 236 273 45 15 chr4 14430527 14430593 -169858069 - MIR SINE MIR -147 115 48 2326 136 27 41 chr4 14431555 14431924 -169856738 - THE1B LTR MaLR 0 364 1 311 297 45 0 chr4 14432854 14432965 -169855697 + L1ME LINE L1 5727 5842 -279 299 268 125 18 chr4 14433676 14433788 -169854874 + MIR3 SINE MIR 63 186 -22 405 288 220 17 chr4 14433987 14434164 -169854498 - MIR SINE MIR -5 257 45 1976 123 16 16 chr4 14434341 14434649 -169854013 + AluSq SINE Alu 4 311 -2 799 144 11 28 chr4 14434668 14434848 -169853814 + GA-rich Low_complexity Low_complexity 2 178 0 1230 249 42 16 chr4 14434994 14435307 -169853355 - MER87 LTR ERV1 -53 488 168 316 239 80 0 chr4 14435657 14435745 -169852917 - MIR SINE MIR -113 149 55 1874 168 27 0 chr4 14435947 14436245 -169852417 + AluSx SINE Alu 1 306 -6 253 271 76 17 chr4 14436811 14436929 -169851733 - L2 LINE L2 -237 3035 2911 312 283 158 39 chr4 14436949 14437151 -169851511 - MIR SINE MIR -13 249 20 206 61 0 30 chr4 14437324 14437357 -169851305 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 877 145 0 0 chr4 14437361 14437485 -169851177 - AluJb SINE Alu -188 124 1 1939 142 3 0 chr4 14437683 14438027 -169850635 - AluSx SINE Alu 0 345 1 1475 159 58 48 chr4 14438063 14438358 -169850304 + AluSx SINE Alu 1 298 -14 25 0 0 0 chr4 14438905 14438930 -169849732 + AT_rich Low_complexity Low_complexity 1 25 0 481 264 170 13 chr4 14439533 14439692 -169848970 + MER5A DNA MER1_type 4 187 -2 273 357 18 53 chr4 14439768 14439939 -169848723 + MIR3 SINE MIR 38 202 -6 2505 74 0 0 chr4 14440028 14440339 -169848323 + AluY SINE Alu 1 311 0 209 311 162 20 chr4 14441735 14441883 -169846779 - MER5A DNA MER1_type -14 175 7 1378 219 139 39 chr4 14441890 14442250 -169846412 - MSTD LTR MaLR 0 396 1 449 225 79 0 chr4 14442317 14442406 -169846256 - MER5A DNA MER1_type -80 109 14 189 326 0 0 chr4 14442848 14442894 -169845768 + MIR SINE MIR 101 146 -62 1440 197 12 4 chr4 14443698 14443957 -169844705 - AluJo SINE Alu -51 261 1 237 218 18 0 chr4 14444243 14444298 -169844364 - MIR SINE MIR -136 126 71 206 284 0 81 chr4 14444340 14444414 -169844248 + L2 LINE L2 2753 2820 -494 441 312 43 29 chr4 14444643 14444781 -169843881 + L2 LINE L2 3133 3272 0 422 313 31 18 chr4 14445109 14445272 -169843390 + MIR SINE MIR 22 186 -76 636 230 25 77 chr4 14445344 14445576 -169843086 + MIR SINE MIR 45 260 -2 292 315 131 40 chr4 14446126 14446348 -169842314 - L2 LINE L2 -1 3271 3030 340 188 59 40 chr4 14446653 14446754 -169841908 + MER94 DNA DNA 2 104 -30 532 158 44 18 chr4 14446942 14447056 -169841606 + MER53 DNA DNA 1 117 -72 1640 191 75 0 chr4 14447059 14447378 -169841284 + MER2 DNA MER2_type 2 344 0 285 202 9 18 chr4 14447386 14447500 -169841162 + (TA)n Simple_repeat Simple_repeat 1 113 0 299 212 6 18 chr4 14447583 14447753 -169840909 + (TA)n Simple_repeat Simple_repeat 2 169 0 353 132 0 0 chr4 14447910 14447963 -169840699 + MER53 DNA DNA 137 189 0 227 146 24 0 chr4 14448149 14448190 -169840472 - L2 LINE L2 -2 3311 3270 2212 128 22 38 chr4 14448263 14448631 -169840031 + THE1B LTR MaLR 1 362 -2 11522 111 6 27 chr4 14448633 14450247 -169838415 + THE1B-int LTR MaLR 1 1580 0 2226 143 25 27 chr4 14450247 14450612 -169838050 + THE1B LTR MaLR 1 364 0 475 179 15 123 chr4 14450733 14450928 -169837734 - MER96B DNA MER1_type? 0 417 244 21 0 0 0 chr4 14451523 14451544 -169837118 + AT_rich Low_complexity Low_complexity 1 21 0 182 273 82 27 chr4 14451615 14451725 -169836937 - MIR SINE MIR -73 189 74 228 344 0 0 chr4 14452151 14452215 -169836447 - MIR SINE MIR -123 139 76 230 342 128 0 chr4 14452526 14452675 -169835987 - L2 LINE L2 -528 2786 2619 252 375 36 12 chr4 14453723 14453891 -169834771 - MIR SINE MIR -70 192 21 268 99 338 0 chr4 14454359 14454430 -169834232 - HSAT4 Satellite centromeric -10 95 1 225 127 338 0 chr4 14454509 14454580 -169834082 - HSAT4 Satellite centromeric -10 95 1 248 82 328 0 chr4 14454869 14454930 -169833732 - HSAT4 Satellite centromeric -24 81 1 257 113 338 0 chr4 14454984 14455055 -169833607 - HSAT4 Satellite centromeric -10 95 1 264 27 0 0 chr4 14455341 14455378 -169833284 + L1PA2 LINE L1 6113 6149 -6 206 311 14 14 chr4 14455661 14455735 -169832927 + L2 LINE L2 3230 3303 -10 857 229 42 67 chr4 14455790 14456698 -169831964 + L1MC4a LINE L1 6441 7492 -316 476 117 0 64 chr4 14456674 14456768 -169831894 - L1MA4A LINE L1 -365 5937 5850 * 2019 139 26 23 chr4 14456769 14457121 -169831541 + L1MA4A LINE L1 5947 6299 -4 358 283 0 0 chr4 14457122 14457228 -169831434 + L1MC4 LINE L1 7565 7670 -372 1321 188 0 27 chr4 14457304 14457565 -169831097 - AluJo SINE Alu -14 298 45 252 272 192 0 chr4 14457565 14457690 -169830972 + L1MC4 LINE L1 7761 7909 -133 277 274 14 0 chr4 14457766 14457839 -169830823 + GA-rich Low_complexity Low_complexity 3 76 0 392 288 88 33 chr4 14458421 14458636 -169830026 - MIR SINE MIR -18 244 18 251 340 68 0 chr4 14459468 14459571 -169829091 - MIR SINE MIR -7 255 146 1123 171 5 37 chr4 14459584 14459801 -169828861 + MER20 DNA MER1_type 3 212 -7 540 256 36 26 chr4 14460085 14460280 -169828382 + LTR16B LTR ERVL 268 464 0 266 208 119 99 chr4 14460323 14460424 -169828238 - L2 LINE L2 0 3272 3170 228 306 10 0 chr4 14461933 14462031 -169826631 + L1ME LINE L1 5030 5128 -1018 310 284 74 74 chr4 14462117 14462455 -169826207 + L1ME LINE L1 5265 5602 -562 253 231 128 26 chr4 14463930 14464047 -169824615 - MIR SINE MIR -81 181 53 241 277 0 0 chr4 14464110 14464175 -169824487 + L2 LINE L2 2991 3055 -217 1189 135 10 21 chr4 14464317 14464510 -169824152 - MSTA LTR MaLR -2 426 236 * 1810 176 101 16 chr4 14464501 14464888 -169823774 - MER52C LTR ERV1 -831 447 28 655 193 64 70 chr4 14464894 14465065 -169823597 - MIR SINE MIR -57 205 36 273 353 0 0 chr4 14465294 14465396 -169823266 - MIR SINE MIR -110 152 51 252 0 0 0 chr4 14466641 14466669 -169821993 + (T)n Simple_repeat Simple_repeat 1 28 0 492 176 0 11 chr4 14466811 14466902 -169821760 + MSTA LTR MaLR 1 90 -338 189 0 0 0 chr4 14467025 14467046 -169821616 + (T)n Simple_repeat Simple_repeat 1 21 0 252 0 0 0 chr4 14467360 14467388 -169821274 + (T)n Simple_repeat Simple_repeat 1 28 0 1875 165 45 45 chr4 14467529 14467904 -169820758 + THE1C LTR MaLR 1 375 0 223 349 33 54 chr4 14468087 14468328 -169820334 - L3 LINE CR1 -221 1356 1121 400 296 101 32 chr4 14468387 14468664 -169819998 - MLT1L LTR MaLR -10 605 310 270 366 20 0 chr4 14469086 14469187 -169819475 - L3 LINE CR1 -507 1070 968 1125 154 29 0 chr4 14469434 14469642 -169819020 - Tigger7 DNA MER2_type -2 2485 2272 2156 127 0 0 chr4 14469645 14469937 -169818725 + AluSx SINE Alu 1 292 -20 3118 209 3 12 chr4 14469938 14470518 -169818144 - Tigger7 DNA MER2_type -158 575 1 2018 130 3 7 chr4 14470551 14470866 -169817796 - AluSx SINE Alu 0 312 7 1458 199 73 3 chr4 14470967 14471294 -169817368 - MLT1C LTR MaLR -113 354 5 493 270 98 16 chr4 14471375 14471566 -169817096 + MIR SINE MIR 36 236 -26 225 339 102 57 chr4 14471605 14471959 -169816703 - L3 LINE CR1 -1040 537 168 234 268 42 28 chr4 14472170 14472241 -169816421 - MIR SINE MIR -150 112 41 23 33 0 0 chr4 14472486 14472516 -169816146 + AT_rich Low_complexity Low_complexity 1 30 0 979 175 38 0 chr4 14473083 14473243 -169815419 - FAM SINE Alu -9 166 1 325 313 133 7 chr4 14473477 14473627 -169815035 - MIR3 SINE MIR -1 207 39 2392 140 8 36 chr4 14474570 14474956 -169813706 + THE1C LTR MaLR 1 375 0 1443 291 78 21 chr4 14475623 14476431 -169812231 - L1M4 LINE L1 -1729 4417 3564 22 35 0 0 chr4 14476776 14476805 -169811857 + AT_rich Low_complexity Low_complexity 1 29 0 326 323 75 37 chr4 14476898 14477192 -169811470 + L1ME LINE L1 5482 5786 -335 280 274 123 9 chr4 14477456 14477562 -169811100 - MIR SINE MIR -13 249 132 613 306 59 13 chr4 14477780 14478169 -169810493 + L1ME3 LINE L1 3194 3600 -2546 284 246 15 0 chr4 14478204 14478269 -169810393 + LTR16A LTR ERVL 385 450 0 1593 266 34 11 chr4 14478269 14478738 -169809924 + L1ME3 LINE L1 5672 6151 -11 447 288 199 14 chr4 14478934 14479215 -169809447 + LTR33A LTR ERVL 138 470 -53 6063 164 13 6 chr4 14479944 14480997 -169807665 + L1MC1 LINE L1 5275 6332 -1 230 198 52 115 chr4 14481240 14481336 -169807326 - MLT1H LTR MaLR -2 547 458 303 324 95 11 chr4 14481596 14481775 -169806887 + L1ME3 LINE L1 5004 5197 -949 907 301 102 13 chr4 14481875 14482512 -169806150 + L1ME3 LINE L1 5198 5897 -265 2212 102 7 3 chr4 14482830 14483123 -169805539 - AluSc SINE Alu -15 294 1 2135 209 8 8 chr4 14483325 14483708 -169804954 - MLT1B LTR MaLR 0 390 8 186 274 0 0 chr4 14483828 14483879 -169804783 - MIR SINE MIR -24 238 188 2413 177 8 88 chr4 14483906 14484437 -169804225 - LTR42 LTR ERVL -7 488 1 383 299 52 13 chr4 14484437 14484591 -169804071 - MIR SINE MIR -102 160 1 296 82 0 20 chr4 14484637 14484686 -169803976 + (TG)n Simple_repeat Simple_repeat 2 49 0 485 157 0 0 chr4 14485616 14485686 -169802976 - LTR42 LTR ERVL -354 141 72 423 311 61 5 chr4 14485686 14485882 -169802780 + MIR SINE MIR 48 254 -8 191 36 36 0 chr4 14486037 14486065 -169802597 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 184 207 17 52 chr4 14486611 14486669 -169801993 - L3 LINE CR1 -277 1300 1245 43493 35 21 3 chr4 14487017 14493010 -169795652 - L1PA2 LINE L1 -50 6105 1 320 62 0 21 chr4 14493057 14493105 -169795557 + (GGGGA)n Simple_repeat Simple_repeat 2 48 0 257 308 133 17 chr4 14493139 14493259 -169795403 - L2 LINE L2 -595 2719 2586 200 398 0 10 chr4 14493733 14493831 -169794831 + MIR SINE MIR 44 140 -68 454 345 84 4 chr4 14493837 14494075 -169794587 - MIR SINE MIR 0 262 6 795 87 0 0 chr4 14495632 14495736 -169792926 - AluSg/x SINE Alu -8 302 199 1902 138 0 0 chr4 14496412 14496680 -169791982 + AluSx SINE Alu 1 268 -44 252 149 0 0 chr4 14497462 14497509 -169791153 + (TA)n Simple_repeat Simple_repeat 2 48 0 422 359 6 13 chr4 14497509 14497668 -169790994 + MIR SINE MIR 30 187 -75 310 274 75 57 chr4 14497968 14498074 -169790588 - L2 LINE L2 -5 3267 3160 698 269 29 14 chr4 14498511 14498719 -169789943 + MLT1A1 LTR MaLR 1 211 -154 239 309 43 53 chr4 14499227 14499321 -169789341 + MIR SINE MIR 33 125 -83 1208 214 9 9 chr4 14499359 14499583 -169789079 + MER58A DNA MER1_type 1 224 0 217 382 39 17 chr4 14499718 14499896 -169788766 + MIR SINE MIR 68 249 -13 1164 304 40 18 chr4 14500359 14500810 -169787852 + LTR16B LTR ERVL 1 461 -3 272 313 0 0 chr4 14501144 14501208 -169787454 + HERV16 LTR ERVL 364 427 -4569 858 328 44 39 chr4 14501485 14502586 -169786076 + HERV16 LTR ERVL 742 1960 -3036 414 313 93 21 chr4 14502680 14502971 -169785691 + LTR16B LTR ERVL 17 328 -136 239 113 84 56 chr4 14504706 14504777 -169783885 + (TTAAA)n Simple_repeat Simple_repeat 1 73 0 519 156 16 31 chr4 14505567 14505695 -169782967 + CT-rich Low_complexity Low_complexity 1 126 0 1995 199 14 7 chr4 14506036 14506468 -169782194 + L1MA9 LINE L1 5498 5932 -380 962 185 0 0 chr4 14506482 14506829 -169781833 + AluSp SINE Alu 137 313 0 1461 205 33 3 chr4 14506855 14507186 -169781476 + L1MA9 LINE L1 5936 6276 -36 2492 149 29 5 chr4 14507210 14507625 -169781037 + MSTA LTR MaLR 1 425 -3 298 218 100 65 chr4 14508903 14509073 -169779589 + MIR SINE MIR 35 210 -52 796 323 52 17 chr4 14509148 14509510 -169779152 + LTR16C LTR ERVL 6 380 -111 231 368 61 9 chr4 14511081 14511195 -169777467 + MIR3 SINE MIR 5 124 -84 530 174 55 0 chr4 14511379 14511488 -169777174 - Tigger3(Golem) DNA MER2_type -1 3028 2914 1670 160 38 107 chr4 14511488 14512066 -169776596 - MLT2A2 LTR ERVL 0 554 1 1986 137 31 28 chr4 14512070 14512457 -169776205 - Tigger3(Golem) DNA MER2_type -112 2917 2530 368 169 0 0 chr4 14512596 14512655 -169776007 - Tigger3(Golem) DNA MER2_type -2969 60 2 324 284 53 0 chr4 14512791 14512886 -169775776 - MIR SINE MIR -88 174 75 201 195 0 0 chr4 14513104 14513145 -169775517 + A-rich Low_complexity Low_complexity 3 43 0 302 283 142 9 chr4 14513145 14513258 -169775404 + MIR3 SINE MIR 14 141 -67 771 259 14 9 chr4 14513517 14513729 -169774933 - MER20 DNA MER1_type -1 218 6 1084 235 73 32 chr4 14513962 14514133 -169774529 + MLT1A2 LTR MaLR 1 164 -210 381 43 0 0 chr4 14514133 14514180 -169774482 + (TC)n Simple_repeat Simple_repeat 2 48 0 1084 235 73 32 chr4 14514180 14514349 -169774313 + MLT1A2 LTR MaLR 164 355 -19 21 36 0 0 chr4 14514782 14514810 -169773852 + AT_rich Low_complexity Low_complexity 1 28 0 187 273 91 55 chr4 14515173 14515283 -169773379 - L2 LINE L2 -3 3269 3156 296 331 14 36 chr4 14515347 14515486 -169773176 - MIR SINE MIR -93 169 34 1143 199 48 57 chr4 14515895 14516247 -169772415 - MLT1B LTR MaLR 0 390 42 1707 215 10 43 chr4 14516277 14516691 -169771971 - MLT1B-int LTR MaLR -1 1734 1335 1014 269 32 19 chr4 14517428 14517737 -169770925 - L2 LINE L2 0 3313 3001 197 366 0 32 chr4 14518145 14518238 -169770424 - L3 LINE CR1 -234 1343 1254 3756 191 38 24 chr4 14518416 14519198 -169769464 - MER54B LTR ERVL 0 793 1 2107 107 0 27 chr4 14519269 14519569 -169769093 + AluSx SINE Alu 1 292 -20 204 292 50 83 chr4 14520238 14520358 -169768304 - MIR SINE MIR -113 149 34 229 250 119 0 chr4 14520902 14520986 -169767676 - MIR SINE MIR -61 201 108 2234 128 0 0 chr4 14521066 14521372 -169767290 - AluY SINE Alu -5 306 1 1469 144 46 25 chr4 14521373 14521657 -169767005 - Tigger3(Golem) DNA MER2_type -3 3026 2737 241 224 239 0 chr4 14521675 14521742 -169766920 - Tigger3(Golem) DNA MER2_type -2946 83 1 351 279 49 25 chr4 14521742 14521864 -169766798 - MIR SINE MIR -64 198 74 386 367 0 43 chr4 14521918 14522128 -169766534 - MIR SINE MIR -42 220 20 21 0 0 0 chr4 14522894 14522915 -169765747 + AT_rich Low_complexity Low_complexity 1 21 0 201 147 0 0 chr4 14523011 14523045 -169765617 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 258 394 31 8 chr4 14523045 14523172 -169765490 - L2 LINE L2 -2 3270 3141 1774 171 55 24 chr4 14525167 14525630 -169763032 - MLT2A2 LTR ERVL 0 515 21 2875 28 0 0 chr4 14526531 14526895 -169761767 - L1PA2 LINE L1 -3632 2514 2151 23650 31 0 2 chr4 14526895 14530540 -169758122 + L1PA2 LINE L1 2517 6155 0 357 317 49 40 chr4 14531006 14531210 -169757452 - MIR SINE MIR -45 217 11 * 380 296 44 15 chr4 14531206 14531341 -169757321 - MIR SINE MIR -78 184 46 24 0 0 0 chr4 14531579 14531603 -169757059 + AT_rich Low_complexity Low_complexity 1 24 0 236 325 113 6 chr4 14531688 14531848 -169756814 + MIR SINE MIR 20 196 -66 293 68 23 0 chr4 14532323 14532367 -169756295 + (TG)n Simple_repeat Simple_repeat 2 46 0 319 280 110 8 chr4 14532443 14532561 -169756101 + MIR SINE MIR 66 195 -67 261 273 27 0 chr4 14532788 14532898 -169755764 + (TA)n Simple_repeat Simple_repeat 1 113 0 225 328 103 0 chr4 14533795 14533911 -169754751 + MIR SINE MIR 124 251 -11 184 158 66 0 chr4 14535221 14535297 -169753365 + (TA)n Simple_repeat Simple_repeat 2 82 0 322 164 31 63 chr4 14535299 14535458 -169753204 + (TATAA)n Simple_repeat Simple_repeat 1 154 0 2076 139 11 22 chr4 14536245 14536604 -169752058 - THE1A LTR MaLR 0 355 1 215 431 26 0 chr4 14536604 14536757 -169751905 - L2 LINE L2 -682 2632 2476 468 276 85 15 chr4 14537027 14537226 -169751436 + MLT1K LTR MaLR 376 588 0 258 311 45 38 chr4 14537229 14537361 -169751301 - L2 LINE L2 -841 2473 2341 281 319 54 54 chr4 14538139 14538305 -169750357 - MIR3 SINE MIR -13 195 30 300 27 0 0 chr4 14538920 14538957 -169749705 + (TG)n Simple_repeat Simple_repeat 2 38 0 213 39 0 0 chr4 14539172 14539198 -169749464 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1345 225 82 13 chr4 14539226 14539655 -169749007 - MER89 LTR ERV1 0 559 1 218 302 0 0 chr4 14541835 14541888 -169746774 - MIR SINE MIR -134 128 76 753 135 0 0 chr4 14542485 14542648 -169746014 + (TC)n Simple_repeat Simple_repeat 2 164 0 258 269 39 39 chr4 14543583 14543679 -169744983 + MIR SINE MIR 22 115 -93 1166 140 96 19 chr4 14544800 14545071 -169743591 + L1MA9 LINE L1 6018 6309 -3 1185 240 59 81 chr4 14545555 14546100 -169742562 + LTR55 LTR ERV 1 533 -15 2332 91 3 0 chr4 14546574 14546872 -169741790 + AluSq SINE Alu 1 299 -14 434 349 30 20 chr4 14547151 14547501 -169741161 - HERV16 LTR ERVL -3567 1429 1045 1926 142 50 36 chr4 14547501 14547860 -169740802 + THE1B LTR MaLR 1 364 0 434 349 30 20 chr4 14547860 14547998 -169740664 - HERV16 LTR ERVL -3951 1045 910 2889 201 59 10 chr4 14548010 14548683 -169739979 + L1MCa LINE L1 31 736 -5690 30418 37 16 2 chr4 14549054 14555086 -169733576 + L1PA3 LINE L1 3 6153 -2 286 301 104 43 chr4 14555105 14555333 -169733329 - LTR16B LTR ERVL -53 411 162 1455 257 34 5 chr4 14555333 14555718 -169732944 - MSTD LTR MaLR 0 396 1 286 301 104 43 chr4 14555718 14555768 -169732894 - LTR16B LTR ERVL -302 162 116 1993 94 0 4 chr4 14556276 14556542 -169732120 - AluY SINE Alu -3 308 44 205 371 19 9 chr4 14557215 14557320 -169731342 + MER5C DNA MER1_type 19 124 -200 21 0 0 0 chr4 14557479 14557500 -169731162 + AT_rich Low_complexity Low_complexity 1 21 0 1200 73 17 0 chr4 14557992 14558169 -169730493 + (GAA)n Simple_repeat Simple_repeat 1 180 0 626 98 29 0 chr4 14558172 14558274 -169730388 + GA-rich Low_complexity Low_complexity 2 106 0 707 167 25 0 chr4 14559044 14559206 -169729456 + (TCCA)n Simple_repeat Simple_repeat 1 166 0 196 385 122 0 chr4 14560852 14561008 -169727654 - MIR SINE MIR 0 262 88 306 278 31 0 chr4 14563261 14563358 -169725304 + L1MC3 LINE L1 6546 6645 -1140 396 0 0 0 chr4 14563358 14563402 -169725260 + (CA)n Simple_repeat Simple_repeat 1 44 0 529 100 22 0 chr4 14563586 14563676 -169724986 + (GGGGA)n Simple_repeat Simple_repeat 3 94 0 4018 205 26 5 chr4 14563876 14564721 -169723941 - MER6 DNA MER2_type -2 863 1 249 317 18 18 chr4 14564774 14565008 -169723654 + GA-rich Low_complexity Low_complexity 1 234 0 1841 182 41 51 chr4 14565579 14566047 -169722615 + MLT1C LTR MaLR 1 463 -4 189 323 48 0 chr4 14566083 14566145 -169722517 - L2 LINE L2 -14 3258 3194 272 259 172 52 chr4 14566165 14566281 -169722381 - MIR SINE MIR -22 240 111 467 210 68 0 chr4 14566293 14566412 -169722250 - MIR SINE MIR -73 135 4 2305 167 62 2 chr4 14566573 14566975 -169721687 + MSTB LTR MaLR 1 426 0 193 313 0 47 chr4 14567252 14567316 -169721346 + MIR3 SINE MIR 6 66 -142 671 372 62 34 chr4 14567420 14568060 -169720602 - L2 LINE L2 0 3313 2654 267 229 0 0 chr4 14568521 14568591 -169720071 + Ricksha DNA DNA 34 103 -3143 266 121 0 69 chr4 14568596 14568611 -169720051 + ERVL LTR ERVL 5643 5696 -68 322 47 0 0 chr4 14568611 14568654 -169720008 + Ricksha DNA DNA 243 285 -969 * 6524 162 24 20 chr4 14568653 14569248 -169719414 + Ricksha DNA DNA 1690 2281 -973 204 40 0 0 chr4 14569248 14569273 -169719389 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6524 162 24 20 chr4 14569273 14570174 -169718488 + Ricksha DNA DNA 2281 3241 -13 2019 156 0 0 chr4 14570285 14570580 -169718082 + AluSx SINE Alu 1 295 -17 1654 168 11 4 chr4 14570985 14571259 -169717403 + AluJo SINE Alu 29 304 -8 2083 130 3 29 chr4 14571463 14571779 -169716883 - AluSx SINE Alu -4 308 1 300 138 0 0 chr4 14573524 14573582 -169715080 - L1MA4 LINE L1 -6 6294 6237 251 329 67 34 chr4 14573797 14573946 -169714716 + L2 LINE L2 2620 2773 -541 496 234 16 40 chr4 14574215 14574339 -169714323 - L2 LINE L2 0 3313 3193 290 200 11 84 chr4 14574398 14574470 -169714192 + MER94 DNA DNA 7 72 -62 1852 171 26 0 chr4 14574470 14574774 -169713888 + AluSx SINE Alu 1 312 0 290 200 11 84 chr4 14574774 14574796 -169713866 + MER94 DNA DNA 72 94 -40 5455 109 11 6 chr4 14575042 14576072 -169712590 + L1PA7 LINE L1 4656 5692 -462 1852 134 33 4 chr4 14576072 14576379 -169712283 - AluSq SINE Alu 0 315 1 5455 109 11 6 chr4 14576379 14576781 -169711881 + L1PA7 LINE L1 5692 6091 -63 437 331 32 50 chr4 14577084 14577290 -169711372 + MIR SINE MIR 15 223 -39 4119 212 58 8 chr4 14577330 14578301 -169710361 + MER45B DNA AcHobo 4 1022 -18 229 270 27 0 chr4 14580185 14580259 -169708403 + MLT1H LTR MaLR 279 354 -195 392 260 135 0 chr4 14580722 14580826 -169707836 - MIR SINE MIR -113 149 32 341 331 6 6 chr4 14582086 14582267 -169706395 - LTR33 LTR ERVL -19 502 322 494 300 32 16 chr4 14583221 14583411 -169705251 - MIR SINE MIR -48 214 22 644 264 92 50 chr4 14583598 14584022 -169704640 + MLT1C LTR MaLR 14 467 0 220 280 0 0 chr4 14584157 14584207 -169704455 + L2 LINE L2 3219 3268 -4 235 253 40 27 chr4 14585109 14585184 -169703478 + MIR SINE MIR 175 250 -12 228 35 0 0 chr4 14586352 14586381 -169702281 + (TG)n Simple_repeat Simple_repeat 1 29 0 298 259 27 45 chr4 14586756 14586868 -169701794 - L2 LINE L2 -4 3309 3200 283 362 28 28 chr4 14586898 14587039 -169701623 + L2 LINE L2 3127 3267 -5 224 301 60 24 chr4 14587292 14587375 -169701287 - L2 LINE L2 -251 3021 2936 1898 122 28 106 chr4 14587391 14587786 -169700876 - THE1B LTR MaLR 0 364 1 248 244 37 96 chr4 14588376 14588511 -169700151 - MIR SINE MIR -68 194 68 231 36 0 0 chr4 14588526 14588554 -169700108 + (TG)n Simple_repeat Simple_repeat 1 28 0 388 347 42 21 chr4 14589213 14589406 -169699256 + L2 LINE L2 2644 2840 -474 3690 182 92 1 chr4 14590068 14590825 -169697837 + LTR1B LTR ERV1 1 826 0 473 320 66 5 chr4 14590940 14591253 -169697409 + L1MC/D LINE L1 5258 5589 -598 198 370 14 0 chr4 14592598 14592671 -169695991 - MIR SINE MIR -179 83 10 454 272 8 0 chr4 14592851 14592976 -169695686 + MLT1J1 LTR MaLR 204 329 -117 17628 56 2 2 chr4 14593070 14596548 -169692114 - L1PA5 LINE L1 -4 6150 2599 2079 39 0 4 chr4 14596547 14596826 -169691836 + L1PA5 LINE L1 2295 2572 -3574 * 2085 89 0 7 chr4 14597243 14597513 -169691149 - AluSp SINE Alu -7 306 39 180 321 147 27 chr4 14597782 14597966 -169690696 - MIR SINE MIR -12 250 45 2148 119 3 0 chr4 14598046 14598341 -169690321 - AluSx SINE Alu -14 298 3 203 316 0 0 chr4 14600679 14600736 -169687926 + L2 LINE L2 3216 3272 0 734 230 0 90 chr4 14601291 14601513 -169687149 - MER63A DNA MER1_type -6 204 3 330 71 0 295 chr4 14601634 14601686 -169686976 - MADE1 DNA Mariner 0 80 77 2261 109 7 0 chr4 14601686 14601988 -169686674 + AluSg SINE Alu 1 304 -6 330 71 0 295 chr4 14601988 14602047 -169686615 - MADE1 DNA Mariner -3 77 2 1940 171 3 19 chr4 14602490 14602800 -169685862 + AluSx SINE Alu 1 305 -7 260 254 87 16 chr4 14603091 14603217 -169685445 - L1ME4a LINE L1 -203 5918 5784 268 269 56 19 chr4 14603225 14603333 -169685329 - MLT1F LTR MaLR -428 114 3 2196 110 10 0 chr4 14603456 14603748 -169684914 - AluSp SINE Alu -18 295 1 2015 113 16 0 chr4 14603748 14604066 -169684596 + L1MA8 LINE L1 5460 5782 -509 317 186 14 0 chr4 14604067 14604137 -169684525 + (TATATG)n Simple_repeat Simple_repeat 4 74 0 241 146 55 0 chr4 14604137 14604192 -169684470 - LTR66 LTR ERVL -171 439 382 1247 146 0 47 chr4 14604192 14604337 -169684325 + L1MA8 LINE L1 5800 5929 -362 2386 117 17 3 chr4 14604337 14604695 -169683967 - THE1B LTR MaLR 0 364 2 1247 146 0 47 chr4 14604695 14604803 -169683859 + L1MA8 LINE L1 5929 6041 -250 413 112 124 0 chr4 14604807 14604896 -169683766 + L1MA8 LINE L1 6186 6285 -6 2078 151 19 26 chr4 14605364 14605742 -169682920 + THE1C LTR MaLR 1 375 0 273 208 26 13 chr4 14605877 14605954 -169682708 + MLT1I LTR MaLR 90 167 -242 698 207 30 0 chr4 14606320 14606484 -169682178 - L1MB4 LINE L1 -1 6179 6011 24 0 0 0 chr4 14607719 14607743 -169680919 + AT_rich Low_complexity Low_complexity 1 24 0 34 42 0 0 chr4 14608314 14608362 -169680300 + AT_rich Low_complexity Low_complexity 1 48 0 242 240 0 67 chr4 14608781 14608856 -169679806 + MIR3 SINE MIR 99 168 -40 391 116 66 0 chr4 14609125 14609246 -169679416 + (TA)n Simple_repeat Simple_repeat 2 130 0 347 324 68 33 chr4 14609972 14610308 -169678354 + ERVL LTR ERVL 4105 4452 -1312 218 237 0 17 chr4 14610528 14610587 -169678075 + (TTA)n Simple_repeat Simple_repeat 2 59 0 308 311 119 6 chr4 14610856 14611033 -169677629 - MIR SINE MIR -9 253 57 323 330 20 0 chr4 14611664 14611764 -169676898 + MIR SINE MIR 21 122 -140 341 312 9 0 chr4 14612218 14612327 -169676335 + MIR SINE MIR 83 192 -70 2032 133 14 0 chr4 14612443 14612728 -169675934 + AluSx SINE Alu 15 303 -9 192 293 131 76 chr4 14612744 14612942 -169675720 - L2 LINE L2 -8 3264 3056 342 349 18 0 chr4 14613487 14613596 -169675066 + MIR SINE MIR 51 161 -101 2254 124 22 22 chr4 14614178 14614542 -169674120 - THE1B LTR MaLR 0 364 1 2214 91 46 0 chr4 14614722 14615007 -169673655 + AluY SINE Alu 1 298 -13 1102 280 90 55 chr4 14615255 14615823 -169672839 - MLT1E LTR MaLR -2 591 4 1619 202 16 35 chr4 14615823 14616191 -169672471 - MLT1A1 LTR MaLR 0 365 1 23 0 0 0 chr4 14616344 14616367 -169672295 + AT_rich Low_complexity Low_complexity 1 23 0 198 71 0 0 chr4 14616392 14616420 -169672242 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 211 359 13 0 chr4 14616553 14616631 -169672031 + MIR SINE MIR 3 81 -181 218 200 0 0 chr4 14616710 14616750 -169671912 - MIR SINE MIR -65 143 104 22 35 0 0 chr4 14616799 14616828 -169671834 + AT_rich Low_complexity Low_complexity 1 29 0 2420 85 3 0 chr4 14617295 14617602 -169671060 - AluSp SINE Alu -5 308 1 262 285 130 33 chr4 14618192 14618389 -169670273 + MIR SINE MIR 24 241 -21 234 379 21 0 chr4 14618445 14618540 -169670122 + L2 LINE L2 2751 2847 -467 450 251 18 0 chr4 14618549 14618573 -169670089 - L1MA10 LINE L1 0 6334 6311 2311 255 48 23 chr4 14618573 14620042 -169668620 - L1ME1 LINE L1 -15 6220 4717 1361 96 0 16 chr4 14620042 14620256 -169668406 - AluY SINE Alu 0 310 100 2482 249 45 37 chr4 14620256 14621444 -169667218 - L1ME1 LINE L1 -1494 4721 3524 1599 205 23 6 chr4 14621448 14621795 -169666867 - MLT1A1 LTR MaLR -1 364 12 613 282 94 66 chr4 14621813 14622325 -169666337 - L1ME1 LINE L1 -2705 3510 2992 2299 105 3 0 chr4 14622374 14622680 -169665982 - AluSq SINE Alu -6 307 1 332 249 93 71 chr4 14622687 14623052 -169665610 - L1ME1 LINE L1 -4722 1493 1121 1538 306 72 25 chr4 14623178 14624036 -169664626 - L1ME1 LINE L1 -5408 988 90 569 355 58 37 chr4 14624082 14624460 -169664202 + L2 LINE L2 2889 3274 -39 968 280 86 7 chr4 14624554 14624961 -169663701 - MLT1L LTR MaLR -42 573 135 999 194 12 40 chr4 14625774 14626027 -169662635 - L1MA10 LINE L1 -10 6324 6079 349 329 136 28 chr4 14626199 14626412 -169662250 - MIR SINE MIR -11 251 16 205 343 14 0 chr4 14626460 14626533 -169662129 - MER5A DNA MER1_type -3 186 113 1541 205 20 7 chr4 14626728 14627026 -169661636 + AluJb SINE Alu 1 302 -10 28798 113 10 13 chr4 14627026 14631840 -169656822 + L1P3 LINE L1 658 5457 -697 509 206 8 53 chr4 14632444 14632575 -169656087 - MLT1E1 LTR MaLR -404 250 73 389 216 54 61 chr4 14632473 14632621 -169656041 - MLT2C1 LTR ERVL -250 147 1 * 186 43 0 0 chr4 14633265 14633288 -169655374 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 25 0 0 0 chr4 14633304 14633329 -169655333 + AT_rich Low_complexity Low_complexity 1 25 0 342 339 70 23 chr4 14633796 14633967 -169654695 + MIR SINE MIR 2 180 -82 1140 218 10 95 chr4 14633992 14634391 -169654271 + MLT1A1 LTR MaLR 1 365 0 375 320 133 49 chr4 14635503 14635706 -169652956 - L3 LINE CR1 -71 1506 1287 658 282 6 6 chr4 14635729 14635892 -169652770 + MIR SINE MIR 92 254 -8 230 269 127 52 chr4 14636429 14636563 -169652099 + MIR3 SINE MIR 35 178 -30 348 315 0 9 chr4 14638027 14638138 -169650524 + MIR3 SINE MIR 83 192 -16 207 119 34 17 chr4 14638550 14638609 -169650053 + (TA)n Simple_repeat Simple_repeat 1 60 0 190 237 51 17 chr4 14639011 14639070 -169649592 - MIR SINE MIR -94 168 108 228 35 0 0 chr4 14640190 14640219 -169648443 + (CA)n Simple_repeat Simple_repeat 2 30 0 * 261 0 0 0 chr4 14640218 14640247 -169648415 + (GA)n Simple_repeat Simple_repeat 2 30 0 1229 216 39 35 chr4 14641254 14641592 -169647070 + MLT1F LTR MaLR 204 542 0 207 306 49 49 chr4 14641618 14641762 -169646900 - MIR SINE MIR -29 233 90 2090 103 7 0 chr4 14641872 14642144 -169646518 + AluSg1 SINE Alu 1 274 -35 243 0 0 0 chr4 14642144 14642171 -169646491 + (TA)n Simple_repeat Simple_repeat 1 27 0 312 70 0 0 chr4 14642344 14642387 -169646275 + (TG)n Simple_repeat Simple_repeat 2 44 0 368 255 20 26 chr4 14642656 14642809 -169645853 - LTR16C LTR ERVL 0 491 340 1623 202 7 7 chr4 14642966 14643268 -169645394 - AluJo SINE Alu -10 302 1 216 0 0 0 chr4 14644057 14644081 -169644581 + (A)n Simple_repeat Simple_repeat 1 24 0 456 322 111 10 chr4 14644236 14644444 -169644218 + MIR SINE MIR 13 241 -21 1639 127 70 0 chr4 14644701 14645031 -169643631 - AluSx SINE Alu 0 312 30 187 273 18 18 chr4 14645158 14645213 -169643449 - L2 LINE L2 -17 3296 3242 254 242 0 0 chr4 14645237 14645299 -169643363 + MER4-int LTR ERV1 1103 1164 -5434 686 228 133 71 chr4 14645315 14645713 -169642949 - MLT1D LTR MaLR -3 464 33 180 97 0 0 chr4 14645743 14645774 -169642888 + (TCTCTG)n Simple_repeat Simple_repeat 2 32 0 329 212 0 10 chr4 14645774 14645873 -169642789 + (TA)n Simple_repeat Simple_repeat 2 99 0 1468 225 68 68 chr4 14646925 14647484 -169641178 + MER68 LTR ERV1 4 562 0 321 286 19 65 chr4 14647519 14647673 -169640989 - MIR SINE MIR -83 179 33 289 281 104 36 chr4 14648568 14648741 -169639921 - MIR SINE MIR -63 145 1 4104 108 22 3 chr4 14648846 14649477 -169639185 + L1PA14 LINE L1 5460 6102 -59 5730 234 34 16 chr4 14649577 14650748 -169637914 + Cheshire DNA MER1_type 190 1399 -1021 274 58 58 0 chr4 14650748 14650800 -169637862 + T-rich Low_complexity Low_complexity 5 59 0 5730 234 34 16 chr4 14650800 14651233 -169637429 + Cheshire DNA MER1_type 1399 1823 -597 23 0 0 0 chr4 14651252 14651275 -169637387 + AT_rich Low_complexity Low_complexity 1 23 0 6377 81 17 3 chr4 14651327 14652952 -169635710 - L1PA7 LINE L1 -3 6151 4504 1646 212 0 10 chr4 14652952 14653249 -169635413 - AluJo SINE Alu -17 295 2 1904 195 75 19 chr4 14653251 14653770 -169634892 + Cheshire DNA MER1_type 1843 2390 -30 351 245 93 78 chr4 14654103 14654307 -169634355 + L2 LINE L2 3106 3312 -1 231 380 53 9 chr4 14654779 14654892 -169633770 - MIR SINE MIR -98 164 47 2338 98 7 0 chr4 14655297 14655603 -169633059 + AluSc SINE Alu 1 308 -1 586 241 247 26 chr4 14655685 14656029 -169632633 + L2 LINE L2 2875 3294 -19 197 331 78 39 chr4 14658933 14659087 -169629575 + L2 LINE L2 1542 1701 -1613 511 157 19 0 chr4 14659114 14659222 -169629440 + GA-rich Low_complexity Low_complexity 1 110 0 1099 243 73 9 chr4 14660031 14660373 -169628289 - MLT2D LTR ERVL -50 364 1 902 255 21 29 chr4 14660589 14660832 -169627830 + MIR SINE MIR 1 241 -21 874 263 0 40 chr4 14662335 14662635 -169626027 - MLT1B LTR MaLR -8 382 95 218 267 139 0 chr4 14662787 14662873 -169625789 + L2 LINE L2 3194 3291 -22 437 232 69 111 chr4 14663090 14663359 -169625303 - L1 LINE L1 -830 5316 5060 2507 58 0 3 chr4 14663359 14663668 -169624994 + AluY SINE Alu 1 308 -3 437 232 69 111 chr4 14663668 14663704 -169624958 - L1 LINE L1 -1086 5060 5024 3768 173 53 17 chr4 14663705 14663971 -169624691 + L1MB1 LINE L1 5328 5583 -585 1345 172 118 8 chr4 14663971 14664233 -169624429 + AluSx SINE Alu 1 291 -21 3768 173 53 17 chr4 14664233 14664774 -169623888 + L1MB1 LINE L1 5583 6164 -4 233 245 0 0 chr4 14664814 14664863 -169623799 + MER58A DNA MER1_type 31 79 -28 1983 125 26 42 chr4 14666172 14666355 -169622307 - AluSx SINE Alu -5 307 130 2593 36 0 0 chr4 14666355 14666656 -169622006 - AluY SINE Alu -10 301 1 1983 125 26 42 chr4 14666656 14666784 -169621878 - AluSx SINE Alu -182 130 1 33 0 0 0 chr4 14667392 14667425 -169621237 + AT_rich Low_complexity Low_complexity 1 33 0 331 313 22 8 chr4 14667612 14667746 -169620916 + ERVL LTR ERVL 5034 5169 -595 357 296 0 16 chr4 14667857 14667982 -169620680 + ERVL LTR ERVL 5219 5341 -313 203 319 0 0 chr4 14668035 14668104 -169620558 + (CATATA)n Simple_repeat Simple_repeat 3 71 0 202 157 20 20 chr4 14668402 14668453 -169620209 + GA-rich Low_complexity Low_complexity 5 55 0 1614 203 70 15 chr4 14668660 14669141 -169619521 - L1MA9 LINE L1 -38 6274 5766 452 246 54 125 chr4 14669156 14669436 -169619226 - L1MEd LINE L1 -5003 1116 857 358 239 46 77 chr4 14669508 14669638 -169619024 + L2 LINE L2 3179 3304 -9 520 308 128 15 chr4 14669651 14669924 -169618738 - L1MEd LINE L1 -5391 728 425 353 324 103 0 chr4 14670112 14670257 -169618405 - L1MEd LINE L1 -5924 195 36 378 179 205 46 chr4 14670332 14670483 -169618179 - HAL1 LINE L1 -1 2506 2332 1801 294 119 38 chr4 14671605 14673248 -169615414 - HAL1 LINE L1 -591 1916 142 503 295 40 12 chr4 14673789 14673962 -169614700 - MER91B DNA MER1_type -12 178 1 182 365 12 0 chr4 14674678 14674763 -169613899 - MIR SINE MIR -8 254 169 321 89 0 0 chr4 14675008 14675053 -169613609 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 1706 190 7 0 chr4 14675053 14675332 -169613330 - AluJo SINE Alu -30 282 2 189 0 0 0 chr4 14676162 14676183 -169612479 + (TA)n Simple_repeat Simple_repeat 2 22 0 1710 176 48 38 chr4 14676616 14677171 -169611491 - MLT2A2 LTR ERVL 0 554 1 1790 176 0 97 chr4 14677426 14677858 -169610804 - MLT1B LTR MaLR 0 390 1 664 316 81 27 chr4 14678367 14678931 -169609731 + L2 LINE L2 2626 3210 -103 206 250 213 25 chr4 14679014 14679094 -169609568 - L2 LINE L2 0 3272 3178 407 333 38 25 chr4 14679205 14679445 -169609217 - MIR SINE MIR 0 262 20 506 369 48 34 chr4 14679561 14680025 -169608637 - L2 LINE L2 -78 3235 2767 559 300 53 37 chr4 14680048 14680371 -169608291 - L2 LINE L2 -660 2654 2327 780 294 85 32 chr4 14680381 14680817 -169607845 + LTR33 LTR ERVL 1 459 -62 252 338 39 0 chr4 14681066 14681143 -169607519 + MIR SINE MIR 12 91 -171 714 250 19 0 chr4 14681149 14681309 -169607353 + MIR SINE MIR 13 175 -87 1109 203 48 48 chr4 14681462 14681820 -169606842 + MLT1A1 LTR MaLR 3 428 0 281 277 0 0 chr4 14681982 14682047 -169606615 + CT-rich Low_complexity Low_complexity 1 65 0 300 188 0 0 chr4 14682143 14682212 -169606450 + (TA)n Simple_repeat Simple_repeat 2 70 0 4963 32 0 3 chr4 14682422 14683071 -169605591 - L1P LINE L1 -2451 3695 3049 4970 16 7 0 chr4 14683071 14683668 -169604994 + L1PA3 LINE L1 5574 6180 0 290 276 24 32 chr4 14683747 14683870 -169604792 + L1ME LINE L1 41 162 -5957 508 273 150 48 chr4 14684150 14684377 -169604285 - MIR SINE MIR 0 262 13 333 294 106 39 chr4 14684483 14684663 -169603999 + L1ME LINE L1 2889 3080 -3049 274 242 30 0 chr4 14684958 14685024 -169603638 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 424 244 92 9 chr4 14685180 14685397 -169603265 + L1ME LINE L1 3715 3949 -2180 23 0 0 0 chr4 14685419 14685442 -169603220 + AT_rich Low_complexity Low_complexity 1 23 0 464 319 47 13 chr4 14685549 14685857 -169602805 + L1ME LINE L1 5285 5593 -554 976 191 11 6 chr4 14686035 14686218 -169602444 - MER5A DNA MER1_type 0 189 6 589 292 60 23 chr4 14686230 14686446 -169602216 - MIR SINE MIR -24 238 15 391 336 98 46 chr4 14686477 14687025 -169601637 - L2 LINE L2 -339 2975 2399 211 239 15 45 chr4 14687133 14687200 -169601462 + MIR SINE MIR 30 94 -168 284 224 86 0 chr4 14687313 14687371 -169601291 - L2 LINE L2 -64 3208 3146 340 273 62 31 chr4 14687496 14687624 -169601038 + L2 LINE L2 3140 3271 -1 330 298 0 0 chr4 14688138 14688222 -169600440 - MIR SINE MIR -67 195 112 315 274 100 58 chr4 14688439 14688629 -169600033 - MIR SINE MIR -13 249 52 29 0 0 0 chr4 14688906 14688935 -169599727 + AT_rich Low_complexity Low_complexity 1 29 0 2973 194 94 65 chr4 14689433 14690313 -169598349 + MER21A LTR ERV1 1 906 -25 467 345 82 9 chr4 14690459 14690691 -169597971 - MIR SINE MIR -2 260 12 357 269 168 19 chr4 14691234 14691442 -169597220 - L1ME4a LINE L1 -50 6071 5833 1712 229 79 15 chr4 14691676 14692147 -169596515 - MLT1D LTR MaLR 0 505 5 328 326 17 6 chr4 14692184 14692362 -169596300 - L1ME4a LINE L1 -345 5776 5597 327 312 0 32 chr4 14692376 14692469 -169596193 - L2 LINE L2 -3 3310 3221 885 112 6 19 chr4 14692630 14692791 -169595871 + (TTTC)n Simple_repeat Simple_repeat 1 159 0 22 56 0 0 chr4 14692798 14692834 -169595828 + AT_rich Low_complexity Low_complexity 1 36 0 864 285 13 4 chr4 14693003 14693231 -169595431 - MIR SINE MIR -17 245 16 1881 209 83 9 chr4 14693242 14693677 -169594985 + MLT1C LTR MaLR 1 467 0 40512 36 22 2 chr4 14693943 14699966 -169588696 + L1PA2 LINE L1 13 6155 0 242 346 29 0 chr4 14699971 14700075 -169588587 + MIR SINE MIR 135 241 -21 30 83 0 0 chr4 14700180 14700252 -169588410 + AT_rich Low_complexity Low_complexity 1 72 0 317 87 0 0 chr4 14700252 14700298 -169588364 + MADE1 DNA Mariner 35 80 0 2071 142 7 3 chr4 14700611 14700913 -169587749 + AluSp SINE Alu 1 303 -10 461 212 0 0 chr4 14700944 14701062 -169587600 - L1PA14 LINE L1 0 6161 6044 280 270 27 36 chr4 14901436 14901547 -169387115 - MIR SINE MIR -141 121 12 1062 152 31 42 chr4 14902470 14902661 -169386001 + AluJb SINE Alu 124 312 0 237 256 78 78 chr4 14902947 14903076 -169385586 + MIR3 SINE MIR 11 139 -69 578 96 16 71 chr4 14903432 14903757 -169384905 + (TA)n Simple_repeat Simple_repeat 1 306 0 2142 123 3 16 chr4 14903866 14904176 -169384486 + AluSx SINE Alu 1 306 -6 26 0 0 0 chr4 14904463 14904489 -169384173 + AT_rich Low_complexity Low_complexity 1 26 0 294 129 0 32 chr4 14904519 14904612 -169384050 + (TA)n Simple_repeat Simple_repeat 2 91 0 236 197 136 0 chr4 14904622 14904688 -169383974 - L1ME4a LINE L1 -68 6053 5979 646 155 52 9 chr4 14904895 14905011 -169383651 - L1MB7 LINE L1 -19 6165 6045 241 287 35 11 chr4 14905079 14905166 -169383496 - L1ME4a LINE L1 -2023 5785 5697 526 221 15 23 chr4 14905414 14905545 -169383117 + MIR SINE MIR 108 237 -25 208 309 25 12 chr4 14905692 14905773 -169382889 - MIR SINE MIR -113 149 68 185 321 247 0 chr4 14905983 14906064 -169382598 + L2 LINE L2 3141 3241 -31 195 231 0 0 chr4 14906406 14906445 -169382217 + L2 LINE L2 3148 3186 -86 522 343 56 16 chr4 14906501 14906807 -169381855 + L2 LINE L2 2565 2882 -432 476 266 78 53 chr4 14906855 14907099 -169381563 - MIR SINE MIR 0 262 13 196 337 130 11 chr4 14908276 14908368 -169380294 + L2 LINE L2 3153 3255 -17 210 167 0 48 chr4 14908651 14908693 -169379969 - MIR SINE MIR -9 253 214 291 154 19 0 chr4 14908953 14909005 -169379657 - MSTD LTR MaLR -49 347 295 537 200 10 0 chr4 14909083 14909183 -169379479 - MSTD LTR MaLR -293 103 3 2048 155 44 8 chr4 14909183 14909545 -169379117 + MER34C LTR ERV1 203 577 -8 910 297 81 26 chr4 14909536 14909920 -169378742 + MLT1J1 LTR MaLR 42 446 0 * 286 360 34 27 chr4 14910149 14910296 -169378366 + L2 LINE L2 2955 3102 -170 2034 168 40 0 chr4 14910442 14910769 -169377893 + MER2 DNA MER2_type 2 341 -3 277 314 12 12 chr4 14911979 14912065 -169376597 - MER5A DNA MER1_type -100 89 4 369 223 58 29 chr4 14912196 14912299 -169376363 - MER103 DNA DNA -1 165 60 389 299 186 9 chr4 14912952 14913173 -169375489 + MIR SINE MIR 3 262 0 343 189 174 15 chr4 14913184 14913316 -169375346 + L1ME4a LINE L1 5965 6117 -4 227 237 75 21 chr4 14913336 14913429 -169375233 + L1ME4a LINE L1 5991 6088 -33 305 325 46 100 chr4 14913922 14914202 -169374460 - L2 LINE L2 -4 3268 3004 1304 140 49 101 chr4 14914406 14914713 -169373949 - MER7A DNA MER2_type -57 289 1 2192 155 69 5 chr4 14914733 14915120 -169373542 - MLT2C2 LTR ERVL -49 404 11 867 278 101 32 chr4 14916624 14917324 -169371338 + L2 LINE L2 2563 3312 -1 2706 120 81 15 chr4 14917405 14917864 -169370798 - L1PA16 LINE L1 -9 6157 5669 216 227 0 0 chr4 14918578 14918622 -169370040 - L2 LINE L2 -5 3267 3224 1460 280 50 50 chr4 14918782 14919654 -169369008 - L2 LINE L2 0 3313 2436 371 225 127 42 chr4 14919684 14919826 -169368836 + MIR SINE MIR 83 236 -26 293 339 8 25 chr4 14919931 14920052 -169368610 + MIR SINE MIR 31 149 -59 857 236 22 0 chr4 14920085 14920263 -169368399 + MER58A DNA MER1_type 40 221 -3 402 68 105 6 chr4 14920975 14921137 -169367525 + (TA)n Simple_repeat Simple_repeat 2 179 0 424 78 96 13 chr4 14921162 14921465 -169367197 + (TA)n Simple_repeat Simple_repeat 1 328 0 1555 182 28 85 chr4 14921493 14921845 -169366817 - Tigger3(Golem) DNA MER2_type -2 3027 16 32 43 0 0 chr4 14921845 14921891 -169366771 + AT_rich Low_complexity Low_complexity 1 46 0 1147 214 110 18 chr4 14921920 14922201 -169366461 + MER2 DNA MER2_type 7 313 -32 266 206 0 33 chr4 14922205 14922297 -169366365 + (TATAA)n Simple_repeat Simple_repeat 5 93 0 1773 128 44 24 chr4 14922657 14922953 -169365709 - AluSx SINE Alu -10 302 1 189 0 0 0 chr4 14923012 14923033 -169365629 + (TCCA)n Simple_repeat Simple_repeat 1 21 0 1967 106 7 11 chr4 14924064 14924346 -169364316 + AluSx SINE Alu 31 311 -1 28 0 0 0 chr4 14924716 14924744 -169363918 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr4 14925465 14925509 -169363153 + AT_rich Low_complexity Low_complexity 1 44 0 317 363 70 37 chr4 14925509 14925724 -169362938 - MIR SINE MIR -7 255 34 267 160 40 27 chr4 14925737 14925812 -169362850 + (TATATG)n Simple_repeat Simple_repeat 6 81 0 311 304 14 86 chr4 14926006 14926226 -169362436 + MIR SINE MIR 10 213 -49 621 254 36 82 chr4 14926706 14926926 -169361736 + MER63A DNA MER1_type 1 210 0 222 313 38 12 chr4 14927216 14927296 -169361366 - L2 LINE L2 -181 3091 3010 420 232 77 97 chr4 14927398 14927478 -169361184 - MIR SINE MIR -43 219 139 1324 249 135 29 chr4 14927478 14927931 -169360731 + MLT1D LTR MaLR 1 501 -4 420 232 77 97 chr4 14927931 14928057 -169360605 - MIR SINE MIR -123 139 17 4169 79 9 11 chr4 14928265 14928797 -169359865 - L1PA11 LINE L1 -2 6172 5642 323 257 37 74 chr4 14929015 14929213 -169359449 + MIR SINE MIR 30 220 -42 266 318 147 40 chr4 14930304 14930502 -169358160 - MLT1K LTR MaLR -367 221 3 220 211 0 70 chr4 14931419 14931476 -169357186 - L2 LINE L2 0 3313 3261 211 204 0 23 chr4 14931812 14931856 -169356806 + CT-rich Low_complexity Low_complexity 3 45 0 408 71 0 0 chr4 14931954 14932010 -169356652 + (GA)n Simple_repeat Simple_repeat 2 57 0 204 200 0 0 chr4 14932107 14932157 -169356505 + (TG)n Simple_repeat Simple_repeat 2 51 0 634 314 105 66 chr4 14932714 14933607 -169355055 + L1MEd LINE L1 2 929 -5190 225 239 23 79 chr4 14933829 14933919 -169354743 + MIR SINE MIR 65 148 -64 409 226 6 94 chr4 14934527 14934708 -169353954 - LTR67 LTR ERVL -21 536 372 2436 114 50 11 chr4 14934855 14935213 -169353449 - THE1C LTR MaLR -3 372 1 1269 143 24 0 chr4 14935218 14935428 -169353234 + L1MA8 LINE L1 6074 6288 -3 184 353 86 9 chr4 14935719 14935835 -169352827 + L2 LINE L2 3182 3306 -7 221 369 41 25 chr4 14936265 14936387 -169352275 - L2 LINE L2 -10 3262 3139 236 29 0 29 chr4 14936560 14936594 -169352068 + (TC)n Simple_repeat Simple_repeat 2 34 0 350 314 127 34 chr4 14936954 14937190 -169351472 - MIR SINE MIR -3 259 2 * 548 284 69 95 chr4 14937190 14937785 -169350877 - L2 LINE L2 -35 3237 2628 252 0 0 0 chr4 14937785 14937813 -169350849 + (TG)n Simple_repeat Simple_repeat 1 28 0 237 33 0 0 chr4 14937812 14937842 -169350820 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 548 284 69 95 chr4 14937813 14937978 -169350684 - L2 LINE L2 -644 2628 2522 200 365 77 37 chr4 14938260 14938638 -169350024 + L2 LINE L2 2343 2735 -579 655 75 69 0 chr4 14938947 14939106 -169349556 + (TA)n Simple_repeat Simple_repeat 2 171 0 189 107 0 0 chr4 14939106 14939134 -169349528 + (CA)n Simple_repeat Simple_repeat 2 29 0 960 246 93 108 chr4 14939246 14939689 -169348973 + MLT1J2 LTR MaLR 3 442 -8 23 0 0 0 chr4 14940308 14940331 -169348331 + AT_rich Low_complexity Low_complexity 1 23 0 184 110 79 39 chr4 14940346 14940473 -169348189 + (TATAA)n Simple_repeat Simple_repeat 5 136 0 1079 196 0 0 chr4 14940593 14940756 -169347906 + FAM SINE Alu 1 163 -12 217 325 12 24 chr4 14940825 14940908 -169347754 - MIR SINE MIR -169 93 12 195 302 47 0 chr4 14940954 14941040 -169347622 - MIR SINE MIR 0 262 173 245 253 0 10 chr4 14941066 14941165 -169347497 + (TA)n Simple_repeat Simple_repeat 1 98 0 2704 158 2 38 chr4 14941165 14941613 -169347049 - Tigger2a DNA MER2_type 0 434 3 341 300 45 0 chr4 14941677 14941787 -169346875 - MIR SINE MIR -104 158 44 317 323 105 23 chr4 14941831 14941964 -169346698 + L2 LINE L2 3124 3267 -5 2106 138 0 0 chr4 14942856 14943152 -169345510 + AluSx SINE Alu 1 296 -16 3447 265 110 52 chr4 14943693 14945009 -169343653 + HAL1 LINE L1 279 1759 -748 1256 154 10 5 chr4 14945009 14945217 -169343445 - L1PA14 LINE L1 -2 6159 5951 3447 265 110 52 chr4 14945217 14945972 -169342690 + HAL1 LINE L1 1759 2469 -38 21 36 0 0 chr4 14946159 14946187 -169342475 + AT_rich Low_complexity Low_complexity 1 28 0 340 292 155 9 chr4 14946239 14946458 -169342204 + L1M4 LINE L1 4075 4325 -1821 24 0 0 0 chr4 14947393 14947417 -169341245 + AT_rich Low_complexity Low_complexity 1 24 0 223 310 35 11 chr4 14947481 14947568 -169341094 + MIR SINE MIR 29 117 -145 193 320 0 13 chr4 14947573 14947651 -169341011 - MIR SINE MIR -5 257 181 226 224 66 13 chr4 14947665 14947741 -169340921 + MIR SINE MIR 151 230 -32 1367 145 19 0 chr4 14948345 14948559 -169340103 + L1PB2 LINE L1 5934 6151 0 1296 158 5 0 chr4 14948569 14948772 -169339890 + L1MC1 LINE L1 6118 6321 -12 234 220 17 0 chr4 14948912 14948971 -169339691 + (TA)n Simple_repeat Simple_repeat 2 61 0 333 0 0 0 chr4 14948971 14949008 -169339654 + (CA)n Simple_repeat Simple_repeat 2 38 0 431 256 62 8 chr4 14949190 14949319 -169339343 + MIR SINE MIR 19 154 -108 192 125 0 0 chr4 14949630 14949662 -169339000 + (TCC)n Simple_repeat Simple_repeat 3 34 0 791 292 68 0 chr4 14949754 14949973 -169338689 + MIR SINE MIR 16 249 -13 288 274 153 8 chr4 14949993 14950117 -169338545 - MIR3 SINE MIR -63 145 4 296 279 66 41 chr4 14950194 14950316 -169338346 + L2 LINE L2 3189 3313 0 996 66 0 0 chr4 14950513 14950635 -169338027 + L1PA5 LINE L1 6032 6153 -1 2986 89 18 0 chr4 14950635 14951024 -169337638 + L1PA10 LINE L1 5769 6167 -1 206 246 35 88 chr4 14951392 14951506 -169337156 - MIR SINE MIR -70 192 85 598 206 48 7 chr4 14951785 14951931 -169336731 + MIR SINE MIR 4 155 -107 258 298 70 18 chr4 14951930 14952044 -169336618 + L3 LINE CR1 1351 1470 -107 * 239 257 158 0 chr4 14952101 14952202 -169336460 - MIR3 SINE MIR -87 121 5 297 313 78 36 chr4 14952227 14952368 -169336294 - MER5B DNA MER1_type -5 173 23 2424 193 26 15 chr4 14952368 14952829 -169335833 - MLT1C LTR MaLR 0 467 2 297 313 78 36 chr4 14952829 14952853 -169335809 - MER5B DNA MER1_type -155 23 1 209 212 153 12 chr4 14952914 14952999 -169335663 - MER5A DNA MER1_type -77 112 16 22 56 0 0 chr4 14953543 14953579 -169335083 + GC_rich Low_complexity Low_complexity 1 36 0 627 200 90 0 chr4 14954612 14954767 -169333895 - MIR SINE MIR -8 254 86 305 242 75 8 chr4 14954800 14954920 -169333742 + MIR SINE MIR 65 192 -70 313 254 45 27 chr4 14955163 14955273 -169333389 + MIR3 SINE MIR 67 178 -30 423 293 62 9 chr4 14955389 14955547 -169333115 - MIR SINE MIR -62 146 19 858 280 116 36 chr4 14956445 14956884 -169331778 - MLT1J LTR MaLR -7 504 31 12074 33 0 1 chr4 14957392 14959554 -169329108 + L1PA3 LINE L1 4022 6185 0 418 264 79 14 chr4 14960102 14960242 -169328420 + L2 LINE L2 3165 3313 0 1527 215 105 33 chr4 14960953 14961381 -169327281 + MLT1C LTR MaLR 6 464 -3 2726 10 0 0 chr4 14961498 14961791 -169326871 - AluYa5 SINE Alu -18 293 1 667 263 35 48 chr4 14962244 14962533 -169326129 - L1ME LINE L1 -317 5804 5520 1530 247 57 46 chr4 14962629 14963191 -169325471 + L1ME3 LINE L1 5594 6161 -1 606 260 166 37 chr4 14963623 14963973 -169324689 + L2 LINE L2 2015 2409 -905 389 235 29 52 chr4 14964068 14964204 -169324458 + L2 LINE L2 3181 3313 0 231 325 92 25 chr4 14964474 14964637 -169324025 + MIR SINE MIR 76 249 -13 2199 92 19 11 chr4 14964674 14965095 -169323567 - L1P4 LINE L1 -696 5472 5050 1246 55 0 0 chr4 14965095 14965239 -169323423 + L1PA10 LINE L1 6024 6168 0 23 33 0 0 chr4 14965319 14965349 -169323313 + AT_rich Low_complexity Low_complexity 1 30 0 481 88 25 0 chr4 14965495 14965575 -169323087 + (TC)n Simple_repeat Simple_repeat 1 82 0 1012 166 78 29 chr4 14965576 14965781 -169322881 - AluJo SINE Alu -40 272 58 303 279 102 57 chr4 14965882 14966165 -169322497 - L2 LINE L2 -571 2743 2448 402 21 0 0 chr4 14966232 14966279 -169322383 + (CA)n Simple_repeat Simple_repeat 2 48 0 185 244 70 81 chr4 14966359 14966445 -169322217 + L2 LINE L2 3188 3272 0 287 275 99 0 chr4 14967054 14967145 -169321517 - L3 LINE CR1 -4 1573 1474 202 237 0 105 chr4 14967398 14967474 -169321188 - L2 LINE L2 -8 3264 3197 * 995 291 109 75 chr4 14967462 14967532 -169321130 + L2 LINE L2 1916 1982 -1331 2136 131 0 0 chr4 14967532 14967823 -169320839 - AluY SINE Alu -20 291 1 995 291 109 75 chr4 14967823 14968838 -169319824 + L2 LINE L2 1982 3033 -280 373 328 59 71 chr4 14969051 14969389 -169319273 + L2 LINE L2 2924 3257 -15 341 236 304 40 chr4 14970178 14970326 -169318336 - MIR3 SINE MIR -5 203 17 318 321 0 27 chr4 14970885 14970997 -169317665 + MER5A DNA MER1_type 4 112 -77 185 259 241 18 chr4 14971132 14971244 -169317418 + L2 LINE L2 3136 3272 0 715 99 10 0 chr4 14971946 14972047 -169316615 + MER5A DNA MER1_type 9 110 -79 366 314 70 73 chr4 14972791 14973106 -169315556 - L2 LINE L2 -48 3224 2911 6271 121 72 3 chr4 14973518 14974871 -169313791 - L1PA12 LINE L1 -1 6167 4704 309 276 75 65 chr4 14975213 14975427 -169313235 + MIR SINE MIR 5 220 -42 1671 177 0 31 chr4 14975990 14976307 -169312355 + AluJb SINE Alu 4 310 -2 438 162 0 0 chr4 14976395 14976463 -169312199 - AluS SINE Alu -15 297 230 643 203 31 0 chr4 14976563 14976691 -169311971 - MER58A DNA MER1_type 0 150 19 260 333 26 0 chr4 14976841 14976919 -169311743 - MIR SINE MIR -157 105 26 647 269 201 19 chr4 14978187 14978496 -169310166 + MLT1I LTR MaLR 43 407 -2 699 318 90 36 chr4 14979377 14979742 -169308920 + L2 LINE L2 2929 3313 0 341 335 39 11 chr4 14980243 14980422 -169308240 + MER117 DNA MER1_type 4 187 -10 452 192 10 0 chr4 14980969 14981068 -169307594 + CT-rich Low_complexity Low_complexity 3 102 0 582 364 77 36 chr4 14981297 14981750 -169306912 + L2 LINE L2 2278 2760 -554 2152 192 103 9 chr4 14981750 14982177 -169306485 + MLT1C LTR MaLR 1 467 0 582 364 77 36 chr4 14982177 14982284 -169306378 + L2 LINE L2 2760 2861 -453 388 301 84 0 chr4 14982687 14982830 -169305832 + MIR3 SINE MIR 19 173 -35 230 308 87 47 chr4 14984019 14984191 -169304471 - MIR SINE MIR -72 190 12 272 306 88 20 chr4 14984821 14984968 -169303694 + MLT1F LTR MaLR 114 270 -279 425 299 29 15 chr4 14985712 14985849 -169302813 - MIR3 SINE MIR -54 154 16 448 230 111 15 chr4 14986083 14986218 -169302444 + MIR3 SINE MIR 10 157 -51 231 36 0 0 chr4 14986545 14986573 -169302089 + (CA)n Simple_repeat Simple_repeat 2 29 0 306 295 98 8 chr4 14986824 14986946 -169301716 - MIR SINE MIR -2 260 128 397 222 207 14 chr4 14987252 14987493 -169301169 + MLT1F LTR MaLR 279 534 -8 1609 155 104 93 chr4 14988148 14988534 -169300128 - MLT1B LTR MaLR 0 390 1 25 0 0 0 chr4 14988552 14988577 -169300085 + AT_rich Low_complexity Low_complexity 1 25 0 1479 168 50 20 chr4 14988709 14989007 -169299655 + L1MB8 LINE L1 5867 6173 -5 235 239 0 45 chr4 14989022 14989089 -169299573 + L3 LINE CR1 1512 1575 -2 247 274 0 0 chr4 14989094 14989145 -169299517 + MIR3 SINE MIR 104 154 -54 630 260 64 52 chr4 14989217 14989467 -169299195 + MIR SINE MIR 8 260 -2 317 364 31 23 chr4 14989765 14989894 -169298768 - L2 LINE L2 -4 3268 3139 457 300 21 26 chr4 14990924 14991115 -169297547 + MIR SINE MIR 20 208 -54 2683 92 3 41 chr4 14991248 14991617 -169297045 + THE1A LTR MaLR 1 355 0 908 247 17 0 chr4 14991806 14991980 -169296682 + MER45A DNA AcHobo 1 177 -1 412 277 0 0 chr4 14992402 14992485 -169296177 + L2 LINE L2 3188 3270 -2 780 266 174 13 chr4 14993274 14993653 -169295009 - LTR16A LTR ERVL -2 448 9 1137 122 0 6 chr4 14993783 14993955 -169294707 - AluSp SINE Alu -9 304 134 201 39 0 0 chr4 14993960 14993986 -169294676 + (TTA)n Simple_repeat Simple_repeat 1 26 0 2161 97 3 7 chr4 14993986 14994268 -169294394 - AluSp SINE Alu -32 281 1 186 353 12 47 chr4 14994565 14994650 -169294012 - L2 LINE L2 0 3313 3232 3052 214 22 17 chr4 14995186 14995821 -169292841 - MER82 DNA MER2_type 0 653 16 992 249 65 49 chr4 14995840 14996346 -169292316 - HAL1b LINE L1 -177 1171 658 371 20 0 20 chr4 14996431 14996480 -169292182 + (CA)n Simple_repeat Simple_repeat 2 49 0 1668 134 26 11 chr4 14996534 14996803 -169291859 + L1PB1 LINE L1 5878 6150 -1 659 210 11 45 chr4 14996831 14997007 -169291655 + MER104 DNA Tc2 1 170 -10 507 319 144 20 chr4 14997195 14997487 -169291175 + L3 LINE CR1 1238 1565 -12 680 203 0 8 chr4 14998043 14998171 -169290491 + MER119 DNA MER1_type 457 583 0 2642 275 85 71 chr4 14998479 15000401 -169288261 - HAL1 LINE L1 -109 2398 450 847 229 22 11 chr4 15000435 15000614 -169288048 - MSTB LTR MaLR -32 394 214 2141 103 0 3 chr4 15001401 15001719 -169286943 + AluY SINE Alu 1 317 0 189 301 229 54 chr4 15002435 15002601 -169286061 + L2 LINE L2 3077 3271 -1 1793 166 41 43 chr4 15002616 15003007 -169285655 + MLT1B LTR MaLR 1 390 0 272 311 50 50 chr4 15004251 15004370 -169284292 + MIR SINE MIR 70 188 -74 1478 296 105 13 chr4 15004418 15005025 -169283637 + L2 LINE L2 1986 2648 -666 21 82 0 0 chr4 15005094 15005143 -169283519 + AT_rich Low_complexity Low_complexity 1 49 0 197 329 96 0 chr4 15005304 15005377 -169283285 + L3 LINE CR1 180 259 -1318 33 25 0 0 chr4 15005537 15005577 -169283085 + AT_rich Low_complexity Low_complexity 1 40 0 348 217 43 11 chr4 15005584 15005676 -169282986 - L1MC4 LINE L1 -1339 6703 6609 57 0 0 0 chr4 15005678 15005735 -169282927 + AT_rich Low_complexity Low_complexity 1 57 0 503 336 75 50 chr4 15005844 15006353 -169282309 + L2 LINE L2 2699 3225 -88 1559 237 100 21 chr4 15006406 15006874 -169281788 - MLT1E2 LTR MaLR -11 615 111 859 86 31 99 chr4 15006918 15006967 -169281695 - MLT2A2 LTR ERVL 0 453 402 1895 155 4 0 chr4 15006967 15007298 -169281364 - AluSx SINE Alu 0 335 4 859 86 31 99 chr4 15007298 15007409 -169281253 - MLT2A2 LTR ERVL -51 402 303 293 224 165 12 chr4 15007518 15007603 -169281059 + MLT1E2 LTR MaLR 111 208 -418 243 169 52 7 chr4 15007739 15007893 -169280769 + (TA)n Simple_repeat Simple_repeat 1 161 0 756 255 48 5 chr4 15008160 15008348 -169280314 + MIR SINE MIR 57 252 -10 1155 287 54 52 chr4 15008516 15008979 -169279683 - LTR16B LTR ERVL 0 464 1 1684 132 148 28 chr4 15010227 15010552 -169278110 - THE1B LTR MaLR 0 364 1 264 273 151 0 chr4 15010583 15010722 -169277940 + MIR SINE MIR 71 230 -32 341 349 62 22 chr4 15010837 15011265 -169277397 + L1MC/D LINE L1 5122 5567 -611 301 309 74 40 chr4 15011932 15012081 -169276581 + L1MC/D LINE L1 5523 5676 -2132 204 313 141 0 chr4 15012092 15012220 -169276442 - L2 LINE L2 0 3313 3168 267 287 98 41 chr4 15013440 15013562 -169275100 + MIR SINE MIR 26 154 -108 1751 195 18 3 chr4 15013642 15014031 -169274631 - L1MC/D LINE L1 -569 6184 5790 1345 246 19 12 chr4 15014034 15014465 -169274197 - L1MC/D LINE L1 -859 5681 5248 1239 215 60 1 chr4 15014449 15014871 -169273791 + L1 LINE L1 4855 5323 -823 * 3147 239 27 67 chr4 15014882 15016297 -169272365 - L1MC/D LINE L1 -1286 5254 3897 1646 143 140 19 chr4 15016298 15016662 -169272000 - MSTA LTR MaLR 0 428 21 2175 234 76 6 chr4 15016679 15017468 -169271194 - L1MC/D LINE L1 -2654 3886 3043 4187 191 59 141 chr4 15017581 15018941 -169269721 - L1MC/D LINE L1 -5010 1530 328 219 36 0 0 chr4 15018941 15018969 -169269693 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 4187 191 59 141 chr4 15018969 15019256 -169269406 - L1MC/D LINE L1 -6212 328 19 238 286 71 0 chr4 15020012 15020068 -169268594 - L2 LINE L2 -10 3262 3203 213 323 77 31 chr4 15020179 15020309 -169268353 - MIR SINE MIR -50 212 77 1606 56 0 0 chr4 15020738 15020936 -169267726 - L1PA7 LINE L1 -11 6143 5946 310 246 66 74 chr4 15020937 15021059 -169267603 + MIR SINE MIR 122 242 -20 187 333 0 0 chr4 15021108 15021162 -169267500 + L2 LINE L2 3219 3272 0 312 267 38 19 chr4 15021254 15021359 -169267303 - L1MC4 LINE L1 -1322 6720 6614 413 365 80 46 chr4 15022089 15022500 -169266162 + L2 LINE L2 2548 2972 -342 1190 330 139 13 chr4 15022752 15023718 -169264944 - L2 LINE L2 -4 3309 2214 32 75 0 0 chr4 15024047 15024114 -169264548 + AT_rich Low_complexity Low_complexity 1 67 0 564 233 83 22 chr4 15024297 15024477 -169264185 + MIR SINE MIR 65 255 -7 594 156 24 180 chr4 15024482 15024629 -169264033 + MER5B DNA MER1_type 1 107 -71 1845 171 3 3 chr4 15024629 15024938 -169263724 + AluJb SINE Alu 1 309 -3 594 156 24 180 chr4 15024938 15025001 -169263661 + MER5B DNA MER1_type 107 178 0 444 294 192 0 chr4 15025187 15025364 -169263298 + MIR SINE MIR 31 241 -21 4125 101 28 2 chr4 15025394 15026008 -169262654 + L1PA13 LINE L1 5534 6163 0 311 342 26 48 chr4 15026415 15026684 -169261978 + L2 LINE L2 2821 3083 -189 2091 81 50 3 chr4 15026731 15027014 -169261648 + AluY SINE Alu 1 296 -15 189 107 0 0 chr4 15027048 15027076 -169261586 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 659 194 0 28 chr4 15027438 15027582 -169261080 + AluJb SINE Alu 172 311 -1 485 299 221 5 chr4 15027700 15027904 -169260758 + MIR SINE MIR 8 255 -7 25 51 0 0 chr4 15027906 15027945 -169260717 + AT_rich Low_complexity Low_complexity 1 39 0 233 289 74 66 chr4 15029032 15029153 -169259509 + MIR SINE MIR 63 184 -78 674 268 103 19 chr4 15029226 15029439 -169259223 + MIR SINE MIR 6 236 -26 234 129 48 32 chr4 15030421 15030483 -169258179 - MER116 DNA Mariner -1 79 17 258 256 12 23 chr4 15030568 15030654 -169258008 + L2 LINE L2 3180 3264 -8 516 192 151 16 chr4 15031144 15031389 -169257273 - Charlie2 DNA MER1_type -73 2789 2512 761 222 126 44 chr4 15031403 15031573 -169257089 - Charlie2a DNA MER1_type -1222 1640 1485 2143 136 0 0 chr4 15031573 15031875 -169256787 + AluSx SINE Alu 1 302 -10 761 222 126 44 chr4 15031875 15032046 -169256616 - Charlie2a DNA MER1_type -1377 1485 1271 2976 234 77 9 chr4 15032099 15033210 -169255452 + L1M4 LINE L1 2168 3353 -2793 618 160 11 0 chr4 15033216 15033310 -169255352 + AluJ/FLAM SINE Alu 5 99 -213 29 47 0 0 chr4 15033310 15033353 -169255309 + AT_rich Low_complexity Low_complexity 1 43 0 1456 242 56 14 chr4 15033353 15033906 -169254756 + L1M4 LINE L1 3342 3917 -2229 445 171 0 0 chr4 15033920 15034025 -169254637 + Charlie5 DNA MER1_type 2451 2555 -57 1265 184 98 34 chr4 15034030 15034296 -169254366 + AluJo SINE Alu 12 294 -18 267 99 0 183 chr4 15034296 15034367 -169254295 + Charlie5 DNA MER1_type 2521 2578 -34 297 302 99 20 chr4 15034906 15035137 -169253525 - MIR3 SINE MIR -18 244 3 502 123 98 0 chr4 15036038 15036160 -169252502 - L1MA7 LINE L1 0 6291 6158 2138 164 10 5 chr4 15036163 15036565 -169252097 - L1MA7 LINE L1 -249 6042 5639 193 287 149 32 chr4 15036677 15036771 -169251891 + MIR SINE MIR 25 129 -79 401 336 58 0 chr4 15037088 15037225 -169251437 + L2 LINE L2 3169 3313 0 254 192 41 27 chr4 15037772 15037845 -169250817 + CT-rich Low_complexity Low_complexity 4 77 0 182 274 81 0 chr4 15037870 15037932 -169250730 - L2 LINE L2 -10 3262 3196 706 338 76 23 chr4 15037993 15038464 -169250198 - L2 LINE L2 -815 2499 2004 1381 262 133 45 chr4 15039070 15039769 -169248893 - L2 LINE L2 -24 3289 2497 13261 113 49 74 chr4 15039769 15041145 -169247517 + Tigger1 DNA MER2_type 2 1290 -1128 1824 134 0 0 chr4 15041145 15041406 -169247256 - AluSx SINE Alu -25 287 27 13261 113 49 74 chr4 15041406 15042506 -169246156 + Tigger1 DNA MER2_type 1290 2416 -2 1381 262 133 45 chr4 15042506 15042735 -169245927 - L2 LINE L2 -816 2497 2290 1188 227 74 65 chr4 15042740 15043198 -169245464 - L2 LINE L2 -1555 1759 1298 25 0 0 0 chr4 15044572 15044597 -169244065 + AT_rich Low_complexity Low_complexity 1 25 0 204 135 0 0 chr4 15046057 15046094 -169242568 + (CGG)n Simple_repeat Simple_repeat 2 38 0 26 30 0 0 chr4 15046472 15046505 -169242157 + GC_rich Low_complexity Low_complexity 1 33 0 395 279 117 113 chr4 15046515 15046705 -169241957 + L1M2 LINE L1 525 713 -6136 183 42 0 0 chr4 15046705 15046729 -169241933 + (TCC)n Simple_repeat Simple_repeat 3 26 0 395 279 117 113 chr4 15046729 15047336 -169241326 + L1M2 LINE L1 713 1325 -5524 302 325 114 72 chr4 15047312 15047909 -169240753 - L1M2 LINE L1 -5479 1370 749 * 192 283 174 22 chr4 15048869 15048961 -169239701 - MIR3 SINE MIR -13 195 90 25 31 0 0 chr4 15053499 15053531 -169235131 + AT_rich Low_complexity Low_complexity 1 32 0 2174 111 10 0 chr4 15053626 15053933 -169234729 - AluSx SINE Alu -2 310 1 397 130 10 110 chr4 15054079 15054179 -169234483 + FLAM_A SINE Alu 34 123 -10 250 300 25 25 chr4 15057525 15057605 -169231057 - MIR3 SINE MIR -31 177 98 963 174 62 17 chr4 15057622 15057800 -169230862 + MER5A DNA MER1_type 4 189 0 1387 140 164 7 chr4 15058249 15058542 -169230120 - MER44D DNA MER2_type 0 609 1 22 35 0 0 chr4 15059821 15059850 -169228812 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 15060438 15060466 -169228196 + AT_rich Low_complexity Low_complexity 1 28 0 787 164 0 41 chr4 15060527 15060673 -169227989 - MLT1F1 LTR MaLR -2 565 426 229 93 0 0 chr4 15061470 15061513 -169227149 - LTR66 LTR ERVL -174 436 394 295 183 17 0 chr4 15111576 15111636 -169177026 + MER112 DNA MER1_type 199 259 -1 1032 214 14 20 chr4 15111746 15112097 -169176565 - L1MA9 LINE L1 -14 6298 5854 21 71 0 0 chr4 15112493 15112535 -169176127 + AT_rich Low_complexity Low_complexity 1 42 0 2649 53 0 0 chr4 15112786 15113089 -169175573 - AluY SINE Alu -8 303 1 1371 212 48 8 chr4 15113187 15113541 -169175121 - L1MB8 LINE L1 0 6178 5811 457 284 31 0 chr4 15113948 15114075 -169174587 - MIR SINE MIR -13 249 119 1163 170 29 119 chr4 15114198 15114348 -169174314 + MLT1A1 LTR MaLR 1 163 -212 2272 94 0 28 chr4 15114348 15114668 -169173994 + AluSq SINE Alu 1 311 -2 1163 170 29 119 chr4 15114668 15114912 -169173750 + MLT1A1 LTR MaLR 163 367 -8 220 196 43 0 chr4 15115869 15115915 -169172747 + MIR SINE MIR 205 252 -10 233 240 108 62 chr4 15115946 15116075 -169172587 - L2 LINE L2 -40 3273 3139 1661 133 97 31 chr4 15116411 15116763 -169171899 - THE1C LTR MaLR 0 375 1 2054 84 22 16 chr4 15116772 15117092 -169171570 - THE1C-int LTR MaLR -8 1572 1251 2070 101 7 151 chr4 15117106 15117570 -169171092 - THE1C-int LTR MaLR -1183 397 1 1995 119 61 25 chr4 15117570 15117932 -169170730 - THE1C LTR MaLR 0 375 1 928 320 65 48 chr4 15117935 15118582 -169170080 - L2 LINE L2 -1008 2306 1649 1778 163 35 0 chr4 15118883 15119171 -169169491 + AluSx SINE Alu 1 298 -14 635 295 37 25 chr4 15119207 15119448 -169169214 - MIR SINE MIR 0 262 19 4808 7 20 0 chr4 15119750 15120301 -169168361 - L1PA2 LINE L1 -3 6152 5591 2743 124 7 0 chr4 15122347 15122767 -169165895 - MSTA LTR MaLR 0 428 6 656 181 77 0 chr4 15122789 15122944 -169165718 - MER58A DNA MER1_type 0 167 1 1214 93 12 0 chr4 15123058 15123219 -169165443 - AluSq SINE Alu -150 163 1 224 273 106 70 chr4 15123219 15123446 -169165216 + L2 LINE L2 2997 3231 -41 2354 255 91 13 chr4 15123964 15124832 -169163830 - L1ME3A LINE L1 -8 6162 5230 470 341 36 0 chr4 15125013 15125180 -169163482 - MIR3 SINE MIR -27 181 9 241 206 96 27 chr4 15126032 15126105 -169162557 - MER116 DNA Mariner 0 80 3 552 245 185 28 chr4 15126190 15126406 -169162256 - MIR SINE MIR -2 260 11 203 312 43 32 chr4 15126927 15127020 -169161642 - L2 LINE L2 -18 3295 3202 444 261 8 42 chr4 15127695 15127814 -169160848 - MIR SINE MIR -79 183 69 2449 62 3 0 chr4 15127877 15128168 -169160494 - AluSp SINE Alu -21 292 1 247 229 0 0 chr4 15128295 15128343 -169160319 + MIR SINE MIR 4 51 -211 537 289 55 12 chr4 15128378 15128634 -169160028 + LTR16C LTR ERVL 151 417 -74 978 281 70 7 chr4 15128641 15129068 -169159594 - LTR16B LTR ERVL 0 464 11 244 213 0 0 chr4 15130081 15130128 -169158534 - MIR SINE MIR -119 143 97 252 197 30 0 chr4 15130135 15130201 -169158461 + MER53 DNA DNA 1 68 -121 2232 112 0 3 chr4 15131830 15132125 -169156537 - AluSq SINE Alu -19 294 1 210 303 0 40 chr4 15132330 15132429 -169156233 + CT-rich Low_complexity Low_complexity 4 98 0 212 284 64 18 chr4 15132684 15132793 -169155869 + MIR SINE MIR 91 204 -58 230 268 46 77 chr4 15132956 15133150 -169155512 - L1MC4 LINE L1 -18 8024 7837 272 239 14 0 chr4 15133381 15133452 -169155210 + MER103 DNA DNA 31 102 -64 2262 120 53 6 chr4 15134915 15135273 -169153389 + THE1C LTR MaLR 1 375 0 3284 134 112 5 chr4 15135273 15135878 -169152784 + THE1C-int LTR MaLR 1 670 -910 271 341 81 23 chr4 15136549 15136722 -169151940 + MIR SINE MIR 23 205 -57 588 289 122 35 chr4 15138187 15138557 -169150105 - MLT1J2 LTR MaLR -16 434 33 261 279 16 0 chr4 15138712 15138773 -169149889 + MIR3 SINE MIR 127 188 -20 316 222 11 67 chr4 15139059 15139149 -169149513 + MIR3 SINE MIR 113 197 -11 1151 112 6 0 chr4 15139624 15139793 -169148869 - L1PA8 LINE L1 -14 6158 5989 381 278 108 57 chr4 15139793 15139960 -169148702 - MIR SINE MIR -72 190 12 505 288 98 74 chr4 15140177 15140597 -169148065 - MLT1J2 LTR MaLR 0 450 21 214 209 12 18 chr4 15140601 15140707 -169147955 + MIR SINE MIR 102 262 0 188 329 89 8 chr4 15141270 15141449 -169147213 + L2 LINE L2 2848 3049 -223 39 68 0 0 chr4 15141747 15141821 -169146841 + AT_rich Low_complexity Low_complexity 1 74 0 623 338 41 0 chr4 15142327 15142620 -169146042 + LTR16A LTR ERVL 96 400 -50 548 273 89 35 chr4 15142683 15142965 -169145697 + MLT1L LTR MaLR 301 597 -18 378 274 21 0 chr4 15143262 15143357 -169145305 + LTR33 LTR ERVL 6 102 -419 1266 242 63 13 chr4 15143497 15143894 -169144768 + Charlie4a DNA MER1_type 2 418 -90 25 31 0 0 chr4 15143894 15143926 -169144736 + AT_rich Low_complexity Low_complexity 1 32 0 4205 25 0 0 chr4 15143926 15144415 -169144247 - L1PA3 LINE L1 0 6155 5667 2293 57 3 33 chr4 15145191 15145491 -169143171 + AluY SINE Alu 3 293 -18 2175 105 3 0 chr4 15146751 15147046 -169141616 - AluSx SINE Alu -6 306 11 2288 94 0 0 chr4 15149574 15149861 -169138801 - AluSp SINE Alu -16 297 11 27 49 0 0 chr4 15151858 15151899 -169136763 + AT_rich Low_complexity Low_complexity 1 41 0 803 206 55 41 chr4 15152324 15152543 -169136119 + MER58A DNA MER1_type 1 222 -2 191 188 21 0 chr4 15153540 15153588 -169135074 + (TA)n Simple_repeat Simple_repeat 2 50 0 23 78 0 0 chr4 15153978 15154029 -169134633 + AT_rich Low_complexity Low_complexity 1 51 0 1563 246 105 37 chr4 15154097 15154397 -169134265 - L1ME3 LINE L1 -328 5834 5556 2200 98 0 14 chr4 15154397 15154694 -169133968 - AluSq SINE Alu -20 293 1 1563 246 105 37 chr4 15154694 15156741 -169131921 - L1ME3 LINE L1 -606 5556 3296 528 258 26 5 chr4 15156747 15156941 -169131721 - L1ME3 LINE L1 -3016 3130 2933 2125 121 29 13 chr4 15158266 15158573 -169130089 + MER1B DNA MER1_type 28 339 0 2251 110 0 0 chr4 15161175 15161485 -169127177 - AluY SINE Alu -1 310 1 279 319 202 42 chr4 15163692 15164028 -169124634 + L2 LINE L2 2585 2974 -340 22 35 0 0 chr4 15165160 15165189 -169123473 + AT_rich Low_complexity Low_complexity 1 29 0 304 255 261 27 chr4 15166201 15166385 -169122277 + MIR SINE MIR 20 246 -16 2198 150 3 12 chr4 15166847 15167187 -169121475 + MER1B DNA MER1_type 1 337 -2 817 289 172 32 chr4 15168208 15168883 -169119779 - L2 LINE L2 -231 3041 2283 2837 265 138 25 chr4 15168914 15170063 -169118599 - L2 LINE L2 -597 2717 1440 577 259 174 19 chr4 15170710 15170922 -169117740 + MIR SINE MIR 18 262 0 22 56 0 0 chr4 15171171 15171207 -169117455 + AT_rich Low_complexity Low_complexity 1 36 0 409 204 43 0 chr4 15171636 15171729 -169116933 - MER5B DNA MER1_type -2 176 80 200 253 12 108 chr4 15171664 15171747 -169116915 + MER5A DNA MER1_type 44 118 -71 * 316 383 8 8 chr4 15172806 15172926 -169115736 - L2 LINE L2 -7 3265 3146 377 308 104 22 chr4 15173091 15173273 -169115389 + L1MB3 LINE L1 5270 5466 -2342 349 254 52 30 chr4 15173287 15173421 -169115241 - L1MC/D LINE L1 -2056 5752 5616 421 215 125 35 chr4 15173603 15173747 -169114915 - MIR SINE MIR 0 262 106 22 0 0 0 chr4 15176866 15176888 -169111774 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr4 15178251 15178288 -169110374 + AT_rich Low_complexity Low_complexity 1 37 0 260 243 19 93 chr4 15179635 15179742 -169108920 + HAL1 LINE L1 1657 1755 -752 25 83 0 0 chr4 15180005 15180065 -169108597 + AT_rich Low_complexity Low_complexity 1 60 0 266 229 121 84 chr4 15180065 15180314 -169108348 - HAL1 LINE L1 -39 2468 2211 271 191 36 24 chr4 15180318 15180402 -169108260 + L1ME3A LINE L1 6081 6165 -5 2418 142 49 12 chr4 15180646 15181077 -169107585 + L1MB3 LINE L1 5663 6109 -74 199 348 186 19 chr4 15181245 15181455 -169107207 - L2 LINE L2 -221 3051 2807 403 208 0 33 chr4 15182141 15182240 -169106422 + MLT1I LTR MaLR 319 407 -2 390 265 45 45 chr4 15182350 15182482 -169106180 - MER5B DNA MER1_type -46 132 1 277 354 53 0 chr4 15182764 15182877 -169105785 + MIR SINE MIR 141 259 -3 3976 247 118 30 chr4 15182981 15186198 -169102464 + L1MB1 LINE L1 249 3314 -2656 1364 101 43 47 chr4 15186283 15186540 -169102122 - L1PA13 LINE L1 -2 6161 5906 589 172 33 33 chr4 15186663 15186785 -169101877 + L1MB1 LINE L1 3390 3511 -2459 1996 154 61 11 chr4 15186785 15187153 -169101509 + L1MB1 LINE L1 5593 5987 -5 1965 239 76 39 chr4 15187282 15187873 -169100789 - MLT1E3 LTR MaLR 0 624 12 206 215 0 15 chr4 15188106 15188171 -169100491 + T-rich Low_complexity Low_complexity 2 65 0 223 316 60 45 chr4 15188270 15188403 -169100259 - MIR3 SINE MIR -64 144 10 615 308 114 52 chr4 15188673 15189076 -169099586 + L2 LINE L2 2885 3312 -1 1309 116 34 29 chr4 15189342 15189549 -169099113 - AluSg/x SINE Alu -12 300 93 2523 51 3 6 chr4 15189919 15190231 -169098431 - AluY SINE Alu 0 311 1 190 214 0 24 chr4 15190606 15190648 -169098014 - MIR SINE MIR -25 237 197 498 281 69 64 chr4 15190708 15190911 -169097751 - MIR SINE MIR -56 206 3 263 293 52 20 chr4 15190911 15191026 -169097636 - MIR SINE MIR -85 123 20 503 288 62 0 chr4 15191112 15191272 -169097390 - MIR SINE MIR -9 253 84 280 274 140 45 chr4 15191788 15191912 -169096750 - MIR SINE MIR -3 259 111 2184 130 0 6 chr4 15191912 15192227 -169096435 + AluSq SINE Alu 1 313 0 280 274 140 45 chr4 15192227 15192281 -169096381 - MIR SINE MIR -151 111 64 180 279 33 0 chr4 15192364 15192425 -169096237 - L2 LINE L2 0 3272 3210 3794 181 9 12 chr4 15192658 15193403 -169095259 - L1MD1 LINE L1 0 6242 5500 1968 97 10 1 chr4 15193408 15193717 -169094945 - THE1A LTR MaLR 0 355 1 10901 102 25 7 chr4 15193717 15195269 -169093393 - THE1A-int LTR MaLR 0 1580 2 2538 102 6 0 chr4 15195270 15195623 -169093039 - THE1A LTR MaLR 0 355 1 6996 219 29 83 chr4 15195623 15196729 -169091933 - L1MD1 LINE L1 -743 5403 4239 363 35 0 70 chr4 15196729 15196786 -169091876 - MADE1 DNA Mariner -27 53 1 6996 219 29 83 chr4 15196786 15197481 -169091181 - L1MD1 LINE L1 -1907 4239 3508 2251 86 3 3 chr4 15197481 15197782 -169090880 - AluSc SINE Alu -8 301 1 6996 219 29 83 chr4 15197782 15198879 -169089783 - L1MD1 LINE L1 -2638 3508 2693 1873 276 101 11 chr4 15199396 15200770 -169087892 - L1ME3A LINE L1 -234 5919 4430 862 280 150 59 chr4 15200874 15201031 -169087631 - L1ME3A LINE L1 -1915 4214 4073 1614 170 71 113 chr4 15201031 15201508 -169087154 - MSTB2 LTR MaLR 0 457 1 862 280 150 59 chr4 15201508 15201528 -169087134 - L1ME3A LINE L1 -2056 4073 4056 1936 114 53 4 chr4 15201528 15201809 -169086853 - AluSg SINE Alu -15 295 1 862 280 150 59 chr4 15201809 15201932 -169086730 - L1ME3A LINE L1 -2073 4056 3946 843 106 4 186 chr4 15201932 15202168 -169086494 - 7SK RNA RNA 0 193 1 862 280 150 59 chr4 15202168 15202548 -169086114 - L1ME3A LINE L1 -2183 3946 3602 1786 159 3 29 chr4 15202548 15202857 -169085805 - AluSx SINE Alu -11 301 1 862 280 150 59 chr4 15202857 15203067 -169085595 - L1ME3A LINE L1 -2527 3602 3240 754 143 55 106 chr4 15203070 15203220 -169085442 + MLT1B LTR MaLR 1 126 -248 2330 102 7 0 chr4 15203220 15203525 -169085137 - AluSp SINE Alu -6 307 1 754 143 55 106 chr4 15203525 15203610 -169085052 + MLT1B LTR MaLR 126 214 -160 324 287 48 0 chr4 15203610 15203777 -169084885 - L1M4 LINE L1 -1704 4442 4268 888 202 28 0 chr4 15203777 15203955 -169084707 + MLT1B LTR MaLR 208 390 0 1066 323 32 16 chr4 15203961 15203989 -169084673 - L1ME3A LINE L1 -2886 3243 3217 21 0 0 0 chr4 15203989 15204010 -169084652 + AT_rich Low_complexity Low_complexity 1 21 0 1066 323 32 16 chr4 15204010 15204640 -169084022 - L1ME3A LINE L1 -2912 3217 2554 415 351 33 47 chr4 15204641 15204875 -169083787 - L1ME3A LINE L1 -5205 914 685 1727 175 114 3 chr4 15204875 15205200 -169083462 + MLT1A1 LTR MaLR 1 361 -4 415 351 33 47 chr4 15205200 15205324 -169083338 - L1ME3A LINE L1 -5434 685 561 2067 127 10 0 chr4 15205559 15205858 -169082804 - AluSx SINE Alu -10 302 1 23 0 0 0 chr4 15205910 15205933 -169082729 + AT_rich Low_complexity Low_complexity 1 23 0 382 267 109 36 chr4 15205999 15206246 -169082416 - L1MEd LINE L1 -4880 1239 975 1067 187 15 20 chr4 15206257 15206455 -169082207 + L1MB1 LINE L1 5967 6163 -5 342 173 4 22 chr4 15206583 15206678 -169081984 - MLT1E3 LTR MaLR 0 624 503 2012 189 72 25 chr4 15206774 15207130 -169081532 + L1MC3 LINE L1 7276 7663 -122 2561 116 31 6 chr4 15207130 15207483 -169081179 + THE1B LTR MaLR 3 364 0 2012 189 72 25 chr4 15207483 15207612 -169081050 + L1MC3 LINE L1 7663 7784 -1 313 253 55 44 chr4 15208087 15208178 -169080484 - LTR33 LTR ERVL -241 280 189 373 336 50 42 chr4 15208445 15208683 -169079979 + LTR16C LTR ERVL 242 481 -10 198 276 17 35 chr4 15209892 15209950 -169078712 + MIR SINE MIR 29 77 -131 416 312 7 22 chr4 15209976 15210114 -169078548 - MIR SINE MIR -83 179 44 252 122 24 0 chr4 15210266 15210307 -169078355 + MLT2B2 LTR ERVL 474 515 0 603 281 143 30 chr4 15210501 15210971 -169077691 - L1ME4a LINE L1 -204 5917 5395 412 294 134 62 chr4 15211333 15211379 -169077283 - MLT1L LTR MaLR -12 603 562 3044 71 6 11 chr4 15211379 15211745 -169076917 + THE1B LTR MaLR 1 364 0 412 294 134 62 chr4 15211745 15212168 -169076494 - MLT1L LTR MaLR -53 562 100 567 251 48 16 chr4 15212329 15212516 -169076146 - MER69 DNA AcHobo -17 2509 2317 1060 239 126 25 chr4 15212535 15212861 -169075801 - MER69 DNA AcHobo -1404 1122 764 * 2141 241 27 49 chr4 15212854 15213485 -169075177 - MLT1E3 LTR MaLR -5 619 3 748 223 202 4 chr4 15213488 15213721 -169074941 - MER69 DNA AcHobo -1747 779 501 433 283 175 7 chr4 15213825 15214111 -169074551 + MER46C DNA MER2_type 2 335 -3 1717 263 53 76 chr4 15214207 15214946 -169073716 - MER21B LTR ERV1 -125 738 17 246 275 74 44 chr4 15215226 15215455 -169073207 - L1ME4a LINE L1 -1712 4434 4199 980 149 98 102 chr4 15215471 15215837 -169072825 - MER4A LTR ERV1 0 465 90 2386 88 3 0 chr4 15215837 15216131 -169072531 + AluSp SINE Alu 1 295 -18 980 149 98 102 chr4 15216131 15216221 -169072441 - MER4A LTR ERV1 -375 90 1 325 380 62 4 chr4 15216232 15216458 -169072204 - L1ME4a LINE L1 -1982 4164 3926 22 35 0 0 chr4 15216477 15216506 -169072156 + AT_rich Low_complexity Low_complexity 1 29 0 978 184 34 0 chr4 15216878 15217057 -169071605 + MER58A DNA MER1_type 40 224 0 1620 145 79 41 chr4 15217196 15217513 -169071149 - Tigger2a DNA MER2_type -105 329 1 216 284 171 11 chr4 15217660 15217748 -169070914 + MIR SINE MIR 12 113 -149 208 295 158 0 chr4 15218411 15218506 -169070156 + MIR SINE MIR 4 113 -149 442 310 99 25 chr4 15220085 15220327 -169068335 - MIR SINE MIR 0 262 3 233 279 96 0 chr4 15220356 15220460 -169068202 + L1ME4a LINE L1 5938 6051 -70 7974 27 3 0 chr4 15220469 15222111 -169066551 - L1PA3 LINE L1 -1 6154 4499 7661 26 1 0 chr4 15222111 15223000 -169065662 + L1PA3 LINE L1 3621 4510 -1636 240 35 0 0 chr4 15223049 15223078 -169065584 + (CA)n Simple_repeat Simple_repeat 1 29 0 229 286 294 47 chr4 15223083 15223572 -169065090 + L2 LINE L2 2368 2977 -337 525 191 0 0 chr4 15223605 15223710 -169064952 + CT-rich Low_complexity Low_complexity 4 108 0 915 173 0 65 chr4 15223712 15223897 -169064765 - FRAM SINE Alu -4 172 1 191 284 45 30 chr4 15223904 15223971 -169064691 + L2 LINE L2 3005 3072 -241 328 140 0 18 chr4 15224025 15224082 -169064580 + MLT2B1 LTR ERVL 1 56 -464 2402 152 102 78 chr4 15224225 15224311 -169064351 - MLT2B2 LTR ERVL -3 512 430 459 0 0 0 chr4 15224311 15224362 -169064300 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 2402 152 102 78 chr4 15224362 15224775 -169063887 - MLT2B2 LTR ERVL -85 430 1 220 185 37 37 chr4 15224822 15224876 -169063786 + L2 LINE L2 3244 3297 -16 1682 255 53 7 chr4 15224895 15225327 -169063335 - MER97c DNA MER1_type? -638 452 1 244 266 38 25 chr4 15225396 15225475 -169063187 + MIR SINE MIR 113 192 -70 292 342 25 17 chr4 15225873 15225993 -169062669 + MIR3 SINE MIR 1 121 -87 206 231 15 0 chr4 15226140 15226205 -169062457 + GA-rich Low_complexity Low_complexity 2 67 0 343 213 80 0 chr4 15226768 15226843 -169061819 + MIR SINE MIR 50 130 -78 1538 242 105 45 chr4 15226876 15227437 -169061225 - MLT1G1 LTR MaLR 0 595 1 8837 68 11 8 chr4 15227946 15229013 -169059649 + MER11C LTR ERVK 1 1071 0 1345 248 123 23 chr4 15229025 15229065 -169059597 - MLT1E2 LTR MaLR -2 624 589 2847 86 11 3 chr4 15229065 15229439 -169059223 + L1PA13 LINE L1 5782 6158 -5 1345 248 123 23 chr4 15229439 15229958 -169058704 - MLT1E2 LTR MaLR -37 589 1 2928 81 44 20 chr4 15230767 15231176 -169057486 - L1MA1 LINE L1 0 6302 5884 251 322 73 10 chr4 15231249 15231454 -169057208 + L1MEc LINE L1 2291 2508 -3888 742 304 63 18 chr4 15231576 15232067 -169056595 + L1MEc LINE L1 2380 2892 -3323 498 273 19 20 chr4 15232624 15232867 -169055795 - L1M4 LINE L1 -1091 5055 4811 486 290 73 33 chr4 15232887 15233190 -169055472 + HAL1 LINE L1 2193 2507 0 211 238 62 62 chr4 15233561 15233641 -169055021 + L2 LINE L2 3192 3271 -1 186 336 29 29 chr4 15233922 15234026 -169054636 - L2 LINE L2 0 3313 3210 832 239 92 16 chr4 15234282 15234533 -169054129 + MLT1C LTR MaLR 6 275 -192 2083 136 0 3 chr4 15234534 15234889 -169053773 + AluSx SINE Alu 1 354 0 822 215 56 26 chr4 15234889 15234935 -169053727 + MLT1C LTR MaLR 260 303 -164 1563 166 56 125 chr4 15234935 15235327 -169053335 + MLT1A1 LTR MaLR 1 365 0 822 215 56 26 chr4 15235327 15235475 -169053187 + MLT1C LTR MaLR 303 460 -7 2083 130 17 0 chr4 15235475 15235775 -169052887 - AluSx SINE Alu -7 305 1 2064 148 35 27 chr4 15236293 15236665 -169051997 - THE1C LTR MaLR 0 375 1 1993 166 61 9 chr4 15236665 15237009 -169051653 + MLT1A1 LTR MaLR 3 364 -1 308 271 0 24 chr4 15237177 15237262 -169051400 + (CATA)n Simple_repeat Simple_repeat 4 86 0 * 321 348 0 28 chr4 15237203 15237384 -169051278 + (CATATA)n Simple_repeat Simple_repeat 4 179 0 199 241 155 0 chr4 15237548 15237606 -169051056 - MIR SINE MIR -117 145 79 625 275 69 103 chr4 15237631 15237708 -169050954 + L2 LINE L2 2164 2242 -1072 2368 79 3 10 chr4 15237708 15238012 -169050650 - AluY SINE Alu -9 302 1 625 275 69 103 chr4 15238012 15238440 -169050222 + L2 LINE L2 2242 2652 -662 511 325 67 57 chr4 15239689 15239718 -169048944 - L1ME4a LINE L1 -58 6063 6036 958 217 51 118 chr4 15239718 15240109 -169048553 + MLT1A1 LTR MaLR 1 365 0 511 325 67 57 chr4 15240109 15240860 -169047802 - L1ME4a LINE L1 -85 6036 5267 1084 137 0 0 chr4 15241291 15241452 -169047210 - FRAM SINE Alu 0 40 1 479 264 25 8 chr4 15242152 15242273 -169046389 + MLT1K LTR MaLR 166 288 -300 447 289 40 55 chr4 15242906 15243018 -169045644 + MIR SINE MIR 48 160 -102 2390 125 30 28 chr4 15243018 15243379 -169045283 - THE1B LTR MaLR -2 362 1 12367 90 8 16 chr4 15243379 15244972 -169043690 - THE1B-int LTR MaLR 0 1580 1 2445 119 30 22 chr4 15244972 15245333 -169043329 - THE1B LTR MaLR 0 364 1 447 289 40 55 chr4 15245333 15245419 -169043243 + MIR SINE MIR 157 245 -17 342 0 0 0 chr4 15245706 15245744 -169042918 + (TG)n Simple_repeat Simple_repeat 1 38 0 297 0 0 0 chr4 15245743 15245776 -169042886 + (GA)n Simple_repeat Simple_repeat 1 33 0 * 2282 121 159 5 chr4 15246033 15246404 -169042258 + MSTA LTR MaLR 1 428 0 424 315 91 0 chr4 15246995 15247160 -169041502 - MIR SINE MIR -19 243 64 195 349 78 36 chr4 15247290 15247456 -169041206 - L2 LINE L2 -275 3038 2866 617 215 146 19 chr4 15247815 15247973 -169040689 + MLT1D LTR MaLR 328 505 0 319 245 31 109 chr4 15248107 15248299 -169040363 + MER69A DNA AcHobo 1 177 0 2305 166 78 5 chr4 15249224 15249621 -169039041 - MSTB LTR MaLR 0 426 1 2322 82 7 0 chr4 15250102 15250405 -169038257 + AluY SINE Alu 5 309 -2 577 320 150 30 chr4 15250491 15250957 -169037705 - L3 LINE CR1 -89 1488 967 392 278 0 9 chr4 15251376 15251491 -169037171 - L2 LINE L2 -1351 1963 1850 553 294 35 10 chr4 15251886 15252083 -169036579 + MIR3 SINE MIR 1 202 -6 227 308 34 82 chr4 15252994 15253140 -169035522 + MIR SINE MIR 63 201 -61 213 196 0 0 chr4 15253688 15253739 -169034923 + (ATG)n Simple_repeat Simple_repeat 3 53 0 234 264 198 41 chr4 15254915 15255036 -169033626 - MIR SINE MIR -70 192 53 513 303 36 0 chr4 15257588 15257783 -169030879 + MIR SINE MIR 61 262 0 530 274 91 18 chr4 15258395 15258614 -169030048 - MIR SINE MIR -4 258 24 181 355 86 0 chr4 15259096 15259189 -169029473 + L2 LINE L2 3210 3310 -3 955 273 97 24 chr4 15259260 15259630 -169029032 + MLT1I LTR MaLR 5 401 -8 332 219 144 65 chr4 15259832 15260033 -169028629 - MIR SINE MIR -31 231 15 295 240 27 0 chr4 15260938 15261013 -169027649 + CT-rich Low_complexity Low_complexity 2 78 0 370 264 62 3 chr4 15261615 15261728 -169026934 - MIR SINE MIR -85 123 5 259 355 58 24 chr4 15261869 15262061 -169026601 + L2 LINE L2 2458 2665 -649 2479 104 58 67 chr4 15262061 15262493 -169026169 + MSTA LTR MaLR 1 428 0 259 355 58 24 chr4 15262493 15262593 -169026069 + L2 LINE L2 2665 2760 -554 198 0 0 0 chr4 15262696 15262718 -169025944 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 14529 184 19 6 chr4 15262839 15266703 -169021959 - L1PB1 LINE L1 -1 6866 2949 2119 198 118 4 chr4 15266700 15267210 -169021452 - L1PB1 LINE L1 -5687 1176 609 * 1596 254 55 16 chr4 15267215 15267762 -169020900 - L1PB1 LINE L1 -6292 571 4 2432 87 0 3 chr4 15268235 15268545 -169020117 + AluSc SINE Alu 1 309 0 221 283 0 0 chr4 15268970 15269016 -169019646 - L2 LINE L2 -16 3256 3211 678 111 37 32 chr4 15270695 15270918 -169017744 + GA-rich Low_complexity Low_complexity 1 224 0 360 328 15 0 chr4 15272244 15272378 -169016284 - MIR SINE MIR -3 259 124 657 316 146 21 chr4 15272437 15272580 -169016082 - L2 LINE L2 0 3313 3189 1596 226 59 8 chr4 15272580 15272951 -169015711 + MLT1B LTR MaLR 1 390 0 657 316 146 21 chr4 15272951 15273231 -169015431 - L2 LINE L2 -124 3189 2837 223 210 32 32 chr4 15273220 15273282 -169015380 - MIR SINE MIR -183 79 18 * 564 199 55 14 chr4 15273812 15273958 -169014704 - L1MD2 LINE L1 -13 6346 6195 642 249 63 15 chr4 15273960 15274165 -169014497 - L1MD2 LINE L1 -218 6141 5927 676 138 62 28 chr4 15274171 15274316 -169014346 - L1MDa LINE L1 -4004 2536 2387 565 287 25 0 chr4 15274358 15274515 -169014147 - L1MDa LINE L1 -6379 161 1 321 325 49 38 chr4 15274646 15275037 -169013625 - HAL1b LINE L1 -892 456 62 496 146 22 34 chr4 15275213 15275302 -169013360 - L1MA5A LINE L1 -4 6293 6206 642 193 9 18 chr4 15275308 15275422 -169013240 + FLAM_A SINE Alu 10 122 -20 480 51 51 10 chr4 15275677 15275775 -169012887 + (TA)n Simple_repeat Simple_repeat 2 103 0 191 345 84 34 chr4 15276984 15277103 -169011559 - L2 LINE L2 -162 3110 2986 237 33 0 0 chr4 15277198 15277228 -169011434 + (CA)n Simple_repeat Simple_repeat 2 31 0 28 0 0 0 chr4 15277257 15277285 -169011377 + AT_rich Low_complexity Low_complexity 1 28 0 314 326 65 29 chr4 15278337 15278475 -169010187 - L2 LINE L2 -18 3254 3112 564 353 11 22 chr4 15278548 15278817 -169009845 + L2 LINE L2 2816 3081 -232 1905 124 19 62 chr4 15279132 15279454 -169009208 - AluSx SINE Alu 0 312 5 315 301 154 27 chr4 15280033 15280365 -169008297 - HAL1 LINE L1 -900 1607 1234 22 0 0 0 chr4 15281314 15281336 -169007326 + AT_rich Low_complexity Low_complexity 1 22 0 242 271 0 14 chr4 15281760 15281830 -169006832 - MIR SINE MIR -111 151 83 278 274 117 45 chr4 15281870 15282049 -169006613 - LTR33 LTR ERVL -2 519 328 41161 37 28 2 chr4 15282151 15287153 -169001509 + L1P LINE L1 1 5135 -1011 2220 125 36 31 chr4 15388528 15388887 -168899775 + THE1B LTR MaLR 1 361 -3 366 333 14 7 chr4 15389035 15389182 -168899480 - MER5A DNA MER1_type -4 185 38 316 320 20 13 chr4 15389056 15389206 -168899456 + MER5A DNA MER1_type 38 188 -1 * 343 205 89 36 chr4 15389217 15389329 -168899333 + MIR SINE MIR 73 190 -72 793 341 59 18 chr4 15389359 15389849 -168898813 - L2 LINE L2 0 3313 2804 2600 201 43 18 chr4 15390501 15391108 -168897554 - MER74B LTR ERVL 0 622 1 407 297 65 16 chr4 15391317 15391502 -168897160 - MIR SINE MIR -52 210 17 453 233 80 27 chr4 15392171 15392321 -168896341 - LTR16C LTR ERVL -94 397 240 1937 125 65 40 chr4 15392463 15392816 -168895846 - THE1B LTR MaLR -2 362 1 227 385 39 8 chr4 15393662 15393792 -168894870 - L2 LINE L2 -1 3271 3138 4402 155 8 17 chr4 15394226 15394943 -168893719 - MER50 LTR ERV1 -23 711 1 466 283 82 14 chr4 15394980 15395199 -168893463 + MIR SINE MIR 11 244 -18 398 359 13 35 chr4 15395395 15395626 -168893036 - MIR SINE MIR -6 256 31 420 157 12 24 chr4 15396272 15396355 -168892307 - MLT1I LTR MaLR 0 409 328 2304 253 111 32 chr4 15397529 15398620 -168890042 + HAL1b LINE L1 172 1348 0 1457 237 84 18 chr4 15398876 15399314 -168889348 - MLT1C LTR MaLR 0 467 1 248 227 27 0 chr4 15399645 15399720 -168888942 - L1ME LINE L1 -331 5790 5714 22 0 0 0 chr4 15399758 15399780 -168888882 + AT_rich Low_complexity Low_complexity 1 22 0 242 312 116 35 chr4 15399893 15400066 -168888596 + MIR SINE MIR 32 218 -44 537 256 76 24 chr4 15400599 15400810 -168887852 - MLT1L LTR MaLR 0 615 394 225 331 57 25 chr4 15400863 15401020 -168887642 - MLT1L LTR MaLR -286 329 168 464 296 98 36 chr4 15401264 15401855 -168886807 + L2 LINE L2 2687 3311 -2 294 300 82 18 chr4 15402143 15402313 -168886349 + L1ME4a LINE L1 5660 5840 -281 420 212 42 8 chr4 15402441 15402559 -168886103 + L1ME4a LINE L1 5989 6110 -11 229 310 124 8 chr4 15402894 15403013 -168885649 - MIR SINE MIR -58 150 36 328 191 0 0 chr4 15403178 15403241 -168885421 + L1MD3 LINE L1 7729 7791 -204 930 148 13 0 chr4 15403350 15403522 -168885140 + AluSq SINE Alu 134 307 0 2343 80 3 32 chr4 15403559 15403871 -168884791 + AluSg SINE Alu 1 303 -7 219 227 0 0 chr4 15403876 15403942 -168884720 + (TA)n Simple_repeat Simple_repeat 1 66 0 277 186 0 41 chr4 15404032 15404129 -168884533 + (TATG)n Simple_repeat Simple_repeat 3 95 0 199 307 27 13 chr4 15404319 15404394 -168884268 - MIR SINE MIR -101 107 32 330 63 0 143 chr4 15404396 15404459 -168884203 + MLT1A2 LTR MaLR 4 57 -317 * 651 171 13 26 chr4 15404446 15404576 -168884086 + MLT1A2 LTR MaLR 260 373 -1 267 254 39 82 chr4 15404858 15405004 -168883658 + MER5A DNA MER1_type 4 141 -37 372 306 97 19 chr4 15405249 15405455 -168883207 + MIR SINE MIR 28 249 -13 503 266 91 37 chr4 15405841 15406250 -168882412 - L1ME4a LINE L1 -59 6062 5632 274 139 56 83 chr4 15406706 15406778 -168881884 - MIR SINE MIR -2 260 191 281 305 0 12 chr4 15407125 15407207 -168881455 - MIR SINE MIR -167 95 15 1635 215 77 51 chr4 15407270 15407436 -168881226 - MLT1D LTR MaLR 0 505 345 3312 138 6 21 chr4 15407436 15407971 -168880691 + MER1A DNA MER1_type 1 527 0 1635 215 77 51 chr4 15407971 15408296 -168880366 - MLT1D LTR MaLR -160 345 1 200 314 146 22 chr4 15408466 15408651 -168880011 - MIR SINE MIR -12 250 43 373 262 37 0 chr4 15408845 15408952 -168879710 + L2 LINE L2 3203 3313 0 619 273 56 59 chr4 15411063 15411210 -168877452 - L1ME4a LINE L1 -32 6089 5943 755 139 9 0 chr4 15411210 15411325 -168877337 - FLAM_C SINE Alu -14 119 4 619 273 56 59 chr4 15411325 15411753 -168876909 - L1ME4a LINE L1 -178 5943 5516 307 296 12 0 chr4 15411830 15411911 -168876751 - L2 LINE L2 0 3313 3232 230 372 64 11 chr4 15411906 15412094 -168876568 + MIR SINE MIR 22 219 -43 * 24 32 0 0 chr4 15412598 15412629 -168876033 + AT_rich Low_complexity Low_complexity 1 31 0 1268 216 11 0 chr4 15412723 15412996 -168875666 - L1MB5 LINE L1 0 6174 5899 433 116 14 0 chr4 15412996 15413065 -168875597 - MSTA LTR MaLR 0 426 357 1161 201 193 4 chr4 15413067 15413321 -168875341 + AluJo SINE Alu 1 302 -10 1327 143 179 4 chr4 15413321 15413594 -168875068 - MSTA LTR MaLR -64 364 44 528 322 111 5 chr4 15413691 15414189 -168874473 + L2 LINE L2 2530 3082 -190 407 261 67 22 chr4 15414302 15414436 -168874226 + MIR SINE MIR 86 225 -37 261 288 0 0 chr4 15414572 15414631 -168874031 + L3 LINE CR1 1519 1577 0 1036 257 66 28 chr4 15414707 15415178 -168873484 + L1ME4a LINE L1 5540 6028 -93 228 163 0 0 chr4 15415364 15415407 -168873255 + (CA)n Simple_repeat Simple_repeat 1 43 0 203 360 87 29 chr4 15415518 15415760 -168872902 + L2 LINE L2 2642 2897 -417 282 280 16 127 chr4 15416129 15416318 -168872344 - MIR SINE MIR -61 201 34 261 0 0 0 chr4 15416399 15416428 -168872234 + (T)n Simple_repeat Simple_repeat 1 29 0 295 322 26 17 chr4 15417068 15417183 -168871479 - MIR SINE MIR -11 251 136 524 250 61 28 chr4 15417188 15417368 -168871294 + MIR SINE MIR 21 206 -56 1420 188 74 14 chr4 15417403 15417770 -168870892 + L1ME1 LINE L1 5773 6161 -5 23 0 0 0 chr4 15417774 15417797 -168870865 + AT_rich Low_complexity Low_complexity 1 23 0 1356 179 54 67 chr4 15418184 15418481 -168870181 - AluJb SINE Alu -19 293 1 374 313 98 4 chr4 15418677 15418849 -168869813 + MIR3 SINE MIR 21 200 -8 284 278 65 0 chr4 15418848 15418956 -168869706 + L2 LINE L2 3146 3260 -12 * 324 299 114 5 chr4 15419271 15419455 -168869207 + L2 LINE L2 2866 3069 -203 332 344 66 27 chr4 15420454 15420637 -168868025 + L2 LINE L2 3083 3272 0 322 298 10 19 chr4 15420742 15420846 -168867816 - MER5B DNA MER1_type 0 178 76 329 320 109 0 chr4 15421244 15421372 -168867290 + MIR SINE MIR 116 257 -5 195 100 0 0 chr4 15421412 15421442 -168867220 + (TG)n Simple_repeat Simple_repeat 2 31 0 609 205 49 70 chr4 15421442 15421627 -168867035 - MER63A DNA MER1_type -1 209 29 234 305 24 12 chr4 15422437 15422519 -168866143 - MIR3 SINE MIR -15 193 111 265 296 57 0 chr4 15423798 15423886 -168864776 + MIR SINE MIR 43 135 -73 205 254 104 30 chr4 15424082 15424149 -168864513 - L2 LINE L2 -92 3221 3150 327 328 170 6 chr4 15424561 15424732 -168863930 + MIR SINE MIR 32 230 -32 3304 147 9 63 chr4 15424781 15425466 -168863196 - L1MB3 LINE L1 0 6183 5536 1121 183 0 0 chr4 15425875 15426050 -168862612 + AluJb SINE Alu 1 175 -137 240 194 28 0 chr4 15426083 15426155 -168862507 + L1MB7 LINE L1 6002 6075 -109 305 167 76 0 chr4 15426157 15426223 -168862439 + L1MB8 LINE L1 6107 6177 -1 563 0 15 0 chr4 15426613 15426680 -168861982 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 375 220 52 91 chr4 15426680 15426905 -168861757 + L1MC4a LINE L1 5695 5912 -1896 33 0 0 0 chr4 15427062 15427095 -168861567 + AT_rich Low_complexity Low_complexity 1 33 0 1043 305 38 40 chr4 15427312 15427781 -168860881 - L2 LINE L2 -38 3275 2808 2056 142 3 0 chr4 15427971 15428267 -168860395 - AluSx SINE Alu -15 297 1 860 168 0 0 chr4 15428759 15428890 -168859772 - FLAM_C SINE Alu -12 131 1 253 283 123 0 chr4 15430610 15430822 -168857840 + L1ME LINE L1 5648 5885 -236 433 290 74 78 chr4 15431679 15431910 -168856752 - MIR SINE MIR -13 249 20 503 322 101 13 chr4 15432778 15433005 -168855657 + MIR SINE MIR 6 252 -10 217 184 20 0 chr4 15433209 15433258 -168855404 + (TTCA)n Simple_repeat Simple_repeat 1 50 0 666 208 80 71 chr4 15433300 15433512 -168855150 - MER20 DNA MER1_type 0 219 6 198 286 20 0 chr4 15434411 15434460 -168854202 + L2 LINE L2 3207 3256 -16 209 205 0 13 chr4 15434471 15434549 -168854113 + (TGGA)n Simple_repeat Simple_repeat 4 80 0 413 305 31 8 chr4 15434961 15435089 -168853573 - MIR3 SINE MIR -33 175 45 226 313 31 0 chr4 15435128 15435192 -168853470 - MIR3 SINE MIR -54 154 89 21 36 0 0 chr4 15435493 15435521 -168853141 + AT_rich Low_complexity Low_complexity 1 28 0 27 100 0 0 chr4 15435549 15435639 -168853023 + AT_rich Low_complexity Low_complexity 1 90 0 286 341 35 12 chr4 15435802 15435887 -168852775 - MIR SINE MIR -86 122 36 280 291 78 19 chr4 15435932 15435979 -168852683 + MIR SINE MIR 37 80 -128 2230 97 0 3 chr4 15435979 15436278 -168852384 - AluSc SINE Alu -11 298 1 280 291 78 19 chr4 15436278 15436333 -168852329 + MIR SINE MIR 80 145 -63 2177 115 0 10 chr4 15436429 15436733 -168851929 + AluSx SINE Alu 1 301 -11 654 320 26 39 chr4 15436751 15436982 -168851680 + MIR SINE MIR 24 251 -11 2285 99 0 3 chr4 15437312 15437605 -168851057 + AluSg SINE Alu 1 292 -18 263 231 110 33 chr4 15438884 15438975 -168849687 - L2 LINE L2 -4 3268 3171 26 30 0 0 chr4 15439886 15439919 -168848743 + AT_rich Low_complexity Low_complexity 1 33 0 631 160 17 8 chr4 15439994 15440113 -168848549 - SVA Other Other -743 643 524 2245 148 69 15 chr4 15441742 15442146 -168846516 - MSTB LTR MaLR 0 426 1 350 360 48 31 chr4 15442182 15442535 -168846127 + L2 LINE L2 2399 2757 -557 623 281 159 37 chr4 15442602 15443086 -168845576 + MLT1K LTR MaLR 45 587 -1 570 229 182 31 chr4 15443386 15443434 -168845228 - MIR SINE MIR -34 228 189 1811 189 33 17 chr4 15443434 15443793 -168844869 + MLT1A1 LTR MaLR 1 365 0 570 229 182 31 chr4 15443793 15443936 -168844726 - MIR SINE MIR -73 189 8 219 308 44 11 chr4 15443977 15444068 -168844594 + L2 LINE L2 3216 3309 -4 776 329 32 56 chr4 15444254 15444719 -168843943 - MLT1K LTR MaLR -123 465 12 4582 92 19 5 chr4 15445119 15445768 -168842894 + L1PA14 LINE L1 5504 6161 0 198 0 0 0 chr4 15446085 15446107 -168842555 + (A)n Simple_repeat Simple_repeat 1 22 0 599 0 14 0 chr4 15446118 15446189 -168842473 + (GAAAA)n Simple_repeat Simple_repeat 5 76 0 811 314 68 17 chr4 15446327 15446786 -168841876 - LTR33 LTR ERVL -8 513 32 314 285 102 29 chr4 15447181 15447318 -168841344 - MIR SINE MIR -95 167 21 788 147 71 38 chr4 15447998 15448182 -168840480 - MER20 DNA MER1_type -28 191 2 240 292 35 26 chr4 15448458 15448571 -168840091 + L1ME LINE L1 5632 5745 -376 562 174 128 0 chr4 15448641 15448750 -168839912 + FLAM_A SINE Alu 2 124 -9 289 130 0 0 chr4 15449997 15450043 -168838619 - MER53 DNA DNA -143 46 1 289 294 29 29 chr4 15450235 15450337 -168838325 + MIR SINE MIR 35 136 -72 396 259 65 0 chr4 15450374 15450513 -168838149 - MER117 DNA MER1_type -49 148 1 181 283 0 0 chr4 15451267 15451313 -168837349 + MIR SINE MIR 161 206 -56 993 277 81 18 chr4 15451333 15451716 -168836946 - LTR16C LTR ERVL -14 477 71 354 261 130 9 chr4 15451794 15451909 -168836753 + L2 LINE L2 3185 3313 0 237 146 0 0 chr4 15451909 15451957 -168836705 + (TGAA)n Simple_repeat Simple_repeat 2 49 0 385 272 125 15 chr4 15453398 15453534 -168835128 - MIR3 SINE MIR -24 184 34 2131 120 34 34 chr4 15453689 15454046 -168834616 - THE1B LTR MaLR -7 357 1 391 344 30 15 chr4 15454050 15454181 -168834481 + L2 LINE L2 3140 3272 0 211 364 15 0 chr4 15454244 15454310 -168834352 - MIR SINE MIR -173 89 23 296 259 106 0 chr4 15454568 15454653 -168834009 - L2 LINE L2 -1 3312 3219 225 0 0 0 chr4 15455629 15455654 -168833008 + (T)n Simple_repeat Simple_repeat 1 25 0 1121 148 31 79 chr4 15456542 15456771 -168831891 - MER20 DNA MER1_type 0 219 2 1750 201 25 16 chr4 15458036 15458399 -168830263 + MLT1A2 LTR MaLR 9 374 0 1917 211 12 20 chr4 15458402 15458801 -168829861 - MSTD LTR MaLR 0 396 1 225 0 0 0 chr4 15458854 15458879 -168829783 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 2196 261 38 21 chr4 15458912 15459486 -168829176 - MLT1G LTR MaLR -6 584 1 312 308 44 0 chr4 15459566 15459725 -168828937 + L1M4 LINE L1 3334 3499 -2647 4703 159 9 22 chr4 15459755 15459905 -168828757 + L1MB4 LINE L1 5344 5494 -686 1945 147 0 13 chr4 15459905 15460217 -168828445 + AluSx SINE Alu 1 308 -4 4703 159 9 22 chr4 15460217 15460914 -168827748 + L1MB4 LINE L1 5494 6180 0 504 260 59 52 chr4 15461054 15461347 -168827315 + L1M4 LINE L1 3681 3975 -2171 264 146 0 42 chr4 15461533 15461581 -168827081 + tRNA-Lys-AAG tRNA tRNA 1 46 -30 652 218 28 34 chr4 15461711 15461890 -168826772 - MIR SINE MIR -21 241 64 1013 278 99 55 chr4 15461899 15462633 -168826029 - L1MEd LINE L1 -4957 1162 396 352 223 127 83 chr4 15462651 15462808 -168825854 - HAL1 LINE L1 -1164 1343 1180 254 224 104 0 chr4 15463076 15463143 -168825519 - HAL1 LINE L1 -2019 488 415 1898 181 103 32 chr4 15463302 15463738 -168824924 - MLT1C LTR MaLR 0 467 1 231 214 0 0 chr4 15463808 15463878 -168824784 + (CA)n Simple_repeat Simple_repeat 1 70 0 2003 221 50 48 chr4 15463897 15464011 -168824651 - MER74B LTR ERVL -6 616 504 2082 176 69 19 chr4 15464011 15464386 -168824276 - MSTD LTR MaLR 0 396 3 2003 221 50 48 chr4 15464386 15464831 -168823831 - MER74B LTR ERVL -118 504 56 269 186 14 0 chr4 15464831 15464901 -168823761 + (CA)n Simple_repeat Simple_repeat 1 71 0 236 337 0 12 chr4 15465016 15465099 -168823563 - HAL1 LINE L1 -2422 85 4 369 0 0 0 chr4 15466222 15466263 -168822399 + (TC)n Simple_repeat Simple_repeat 2 42 0 * 405 0 0 0 chr4 15466262 15466307 -168822355 + (TA)n Simple_repeat Simple_repeat 1 45 0 216 191 64 0 chr4 15466327 15466374 -168822288 - L2 LINE L2 -2 3311 3262 361 304 94 55 chr4 15467087 15467288 -168821374 - MIR SINE MIR -7 255 47 393 296 109 14 chr4 15467690 15467923 -168820739 + MIR SINE MIR 7 259 -3 195 208 69 69 chr4 15468548 15468620 -168820042 - MIR SINE MIR -21 241 170 2784 260 101 69 chr4 15468694 15469899 -168818763 - L2 LINE L2 -2 3311 2146 2878 98 36 0 chr4 15469899 15470316 -168818346 + L1MA2 LINE L1 5873 6304 0 2784 260 101 69 chr4 15470316 15470566 -168818096 - L2 LINE L2 -1167 2146 1905 2302 97 0 0 chr4 15470566 15470856 -168817806 + AluSg SINE Alu 1 290 -20 2784 260 101 69 chr4 15470856 15471203 -168817459 - L2 LINE L2 -1408 1905 1351 1415 246 109 8 chr4 15471649 15472043 -168816619 - MER57B LTR ERV1 0 434 1 2341 94 3 0 chr4 15472593 15472891 -168815771 + AluSx SINE Alu 1 299 -13 291 120 359 33 chr4 15472941 15473033 -168815629 - L2 LINE L2 0 3313 3192 244 291 162 8 chr4 15473926 15474043 -168814619 + L2 LINE L2 3136 3270 -2 193 230 92 115 chr4 15475550 15475637 -168813025 + MER5B DNA MER1_type 17 101 -77 367 293 69 17 chr4 15475688 15475804 -168812858 - MIR SINE MIR -110 152 31 2495 152 38 31 chr4 15476609 15476799 -168811863 + MSTB LTR MaLR 1 188 -238 2265 108 0 7 chr4 15476799 15477104 -168811558 + AluSx SINE Alu 1 303 -9 2495 152 38 31 chr4 15477104 15477334 -168811328 + MSTB LTR MaLR 188 424 -2 1434 218 32 47 chr4 15477910 15478290 -168810372 - MLT1B LTR MaLR -16 374 1 24 0 0 0 chr4 15478300 15478324 -168810338 + AT_rich Low_complexity Low_complexity 1 24 0 826 236 50 0 chr4 15478984 15479166 -168809496 - MLT1F1 LTR MaLR -376 191 1 357 292 100 8 chr4 15479461 15479591 -168809071 + MIR SINE MIR 14 155 -107 1196 276 141 25 chr4 15479798 15480451 -168808211 - L2 LINE L2 -339 2975 2247 444 279 175 13 chr4 15480449 15480678 -168807984 + L2 LINE L2 3039 3304 -9 * 4720 130 16 0 chr4 15480718 15481481 -168807181 - L1MA4 LINE L1 -311 7408 6634 * 7954 174 28 25 chr4 15481461 15484168 -168804494 - L1MA4 LINE L1 -2216 5349 2622 1705 240 73 38 chr4 15485130 15485706 -168802956 + L2 LINE L2 1744 2339 -975 2034 246 23 19 chr4 15485716 15486245 -168802417 - L1ME1 LINE L1 -7 6159 5629 1718 187 113 28 chr4 15486264 15486687 -168801975 + LTR2B LTR ERV1 32 490 0 1765 198 34 26 chr4 15486688 15486977 -168801685 - L1ME1 LINE L1 -535 5631 5346 2070 140 0 3 chr4 15486977 15487277 -168801385 - AluSx SINE Alu -13 299 1 1765 198 34 26 chr4 15487277 15487623 -168801039 - L1ME1 LINE L1 -820 5346 4989 1666 226 59 23 chr4 15487624 15488067 -168800595 + L2 LINE L2 2328 2786 -528 971 273 94 53 chr4 15488571 15488810 -168799852 + L2 LINE L2 2804 3032 -281 1465 178 35 49 chr4 15488810 15489145 -168799517 - AluJb SINE Alu 0 331 1 971 273 94 53 chr4 15489145 15489391 -168799271 + L2 LINE L2 3032 3311 -2 6036 113 39 2 chr4 15490476 15490678 -168797984 - L1PA15 LINE L1 -3 6162 5969 1999 139 3 10 chr4 15490678 15490981 -168797681 - AluSx SINE Alu -11 301 1 6036 113 39 2 chr4 15490981 15492125 -168796537 - L1PA15 LINE L1 -196 5969 4820 416 222 54 11 chr4 15492125 15492233 -168796429 + L1PA8A LINE L1 4179 5663 -468 2912 200 2 0 chr4 15492244 15492825 -168795837 + L1P LINE L1 4249 4830 -1316 402 213 57 8 chr4 15493020 15493142 -168795520 - Charlie2 DNA MER1_type -2 2860 2733 1438 201 25 0 chr4 15493142 15493426 -168795236 - L1M4 LINE L1 -592 5592 5302 296 200 0 29 chr4 15493399 15493469 -168795193 + L1MB7 LINE L1 6117 6184 0 * 1879 197 19 8 chr4 15494645 15495016 -168793646 + L1MC1 LINE L1 5957 6331 -2 545 224 0 28 chr4 15495540 15495647 -168793015 - Tigger3(Golem) DNA MER2_type 0 3038 2935 297 0 0 0 chr4 15495647 15495680 -168792982 + (TG)n Simple_repeat Simple_repeat 2 34 0 240 35 0 0 chr4 15495679 15495708 -168792954 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 481 200 0 0 chr4 15495819 15495899 -168792763 - Tigger3(Golem) DNA MER2_type -2949 80 1 252 269 183 11 chr4 15496717 15496810 -168791852 - MER5A DNA MER1_type -63 126 18 210 342 69 52 chr4 15497209 15497440 -168791222 + MIR SINE MIR 12 246 -16 288 161 0 0 chr4 15497936 15497998 -168790664 + T-rich Low_complexity Low_complexity 1 62 0 1607 144 8 23 chr4 15498620 15498877 -168789785 + AluJo SINE Alu 35 287 -25 585 233 57 32 chr4 15498888 15499118 -168789544 - MIR SINE MIR -1 261 24 647 270 56 26 chr4 15500465 15500698 -168787964 + MIR SINE MIR 3 242 -20 651 194 31 42 chr4 15501245 15501436 -168787226 + L1M4 LINE L1 5088 5276 -870 2367 84 0 19 chr4 15502363 15502672 -168785990 + AluSg SINE Alu 1 303 -7 2178 209 153 12 chr4 15503112 15503673 -168784989 - LTR48B LTR ERV1 0 644 5 299 267 81 50 chr4 15503703 15503961 -168784701 + LTR16C LTR ERVL 224 489 -2 312 324 0 0 chr4 15504118 15504192 -168784470 - MIR SINE MIR -185 77 4 2200 112 0 0 chr4 15504849 15505143 -168783519 - AluSx SINE Alu -16 296 3 1410 168 158 13 chr4 15505249 15505553 -168783109 - MER7A DNA MER2_type 0 346 1 1930 153 0 0 chr4 15505885 15506167 -168782495 + AluJb SINE Alu 1 282 -30 4456 159 58 18 chr4 15507455 15508249 -168780413 + L1MB3 LINE L1 5305 6136 -47 2038 108 31 3 chr4 15508249 15508537 -168780125 + AluSx SINE Alu 1 296 -16 4456 159 58 18 chr4 15508537 15508585 -168780077 + L1MB3 LINE L1 6136 6181 -2 1172 241 21 0 chr4 15508776 15509017 -168779645 - MLT1F1 LTR MaLR -316 251 6 200 159 0 23 chr4 15509570 15509614 -168779048 + GA-rich Low_complexity Low_complexity 2 44 0 599 303 22 0 chr4 15509688 15509866 -168778796 - MIR SINE MIR -56 206 25 307 211 154 49 chr4 15510830 15510953 -168777709 + L2 LINE L2 3136 3271 -1 299 323 113 0 chr4 15511024 15511157 -168777505 - MIR SINE MIR -60 202 55 21 0 0 0 chr4 15511410 15511431 -168777231 + AT_rich Low_complexity Low_complexity 1 21 0 2628 43 7 0 chr4 15512513 15512818 -168775844 - AluY SINE Alu -4 307 1 585 301 77 0 chr4 15513044 15513227 -168775435 + MIR SINE MIR 32 228 -34 2740 106 5 19 chr4 15513291 15513660 -168775002 - THE1B LTR MaLR 0 364 1 10598 80 98 3 chr4 15513660 15515103 -168773559 - THE1B-int LTR MaLR 0 1580 2 2595 125 5 19 chr4 15515104 15515473 -168773189 - THE1B LTR MaLR 0 364 1 463 275 75 35 chr4 15515586 15515776 -168772886 + MIR SINE MIR 7 202 -60 29 28 0 0 chr4 15515785 15515821 -168772841 + AT_rich Low_complexity Low_complexity 1 36 0 182 179 0 0 chr4 15517261 15517300 -168771362 + MIR SINE MIR 210 248 -14 1708 178 3 22 chr4 15517488 15517778 -168770884 + AluJo SINE Alu 1 286 -26 255 61 0 0 chr4 15517778 15517811 -168770851 + (CATA)n Simple_repeat Simple_repeat 2 34 0 1708 178 3 22 chr4 15517811 15517835 -168770827 + AluJo SINE Alu 286 309 -3 2119 102 20 3 chr4 15518408 15518701 -168769961 + AluSq SINE Alu 1 298 -15 225 0 0 0 chr4 15518752 15518777 -168769885 + (TTCC)n Simple_repeat Simple_repeat 3 27 0 205 290 43 14 chr4 15518800 15518869 -168769793 - L2 LINE L2 -12 3260 3190 474 192 10 20 chr4 15519116 15519215 -168769447 - MLT1K LTR MaLR -9 579 482 2307 98 0 0 chr4 15519705 15520002 -168768660 - AluSg1 SINE Alu -12 297 1 2622 45 0 10 chr4 15520012 15520322 -168768340 - AluY SINE Alu -4 307 1 535 242 18 8 chr4 15521873 15522017 -168766645 - MIR SINE MIR -57 151 9 277 319 76 47 chr4 15524430 15524696 -168763966 + L1ME LINE L1 5450 5741 -429 1617 163 94 4 chr4 15524696 15524973 -168763689 + AluJo SINE Alu 1 302 -10 277 319 76 47 chr4 15524973 15525091 -168763571 + L1ME LINE L1 5741 5854 -316 387 350 65 38 chr4 15525096 15525387 -168763275 - L1MC4a LINE L1 -1897 5911 5613 182 79 0 53 chr4 15525415 15525453 -168763209 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 472 15 61 30 chr4 15525466 15525532 -168763130 - L1PA4 LINE L1 0 6155 6088 2632 49 0 0 chr4 15525534 15525842 -168762820 - AluY SINE Alu -3 308 1 36 0 0 0 chr4 15525954 15525990 -168762672 + AT_rich Low_complexity Low_complexity 1 36 0 552 323 119 31 chr4 15526569 15527158 -168761504 + L2 LINE L2 1640 2280 -1034 24 32 0 0 chr4 15527239 15527270 -168761392 + AT_rich Low_complexity Low_complexity 1 31 0 787 268 72 4 chr4 15527500 15527735 -168760927 - MIR SINE MIR -10 252 2 884 263 118 78 chr4 15528923 15530060 -168758602 - L1ME3 LINE L1 0 6162 4968 262 290 100 0 chr4 15530366 15530466 -168758196 + L2 LINE L2 3153 3262 -10 270 320 100 0 chr4 15530611 15530711 -168757951 + L2 LINE L2 3153 3262 -10 323 286 0 0 chr4 15530842 15530940 -168757722 + CT-rich Low_complexity Low_complexity 4 101 0 231 318 24 0 chr4 15531497 15531582 -168757080 - MER103 DNA DNA -53 113 27 2444 42 3 14 chr4 15531750 15532038 -168756624 + L1PA6 LINE L1 5863 6147 -7 23 0 0 0 chr4 15532038 15532061 -168756601 + AT_rich Low_complexity Low_complexity 1 23 0 696 253 82 12 chr4 15532204 15532435 -168756227 + MIR SINE MIR 18 262 0 207 286 0 0 chr4 15532938 15532987 -168755675 - MIR SINE MIR -31 231 183 534 259 74 78 chr4 15533177 15533420 -168755242 - MIR SINE MIR -3 259 18 314 138 215 0 chr4 15533854 15533919 -168754743 + MER116 DNA Mariner 1 79 -1 29 28 0 0 chr4 15534346 15534382 -168754280 + AT_rich Low_complexity Low_complexity 1 36 0 419 186 14 0 chr4 15534417 15534487 -168754175 + MER5A DNA MER1_type 4 74 -115 866 156 0 15 chr4 15534489 15534624 -168754038 + AluJo SINE Alu 2 134 -178 311 149 176 0 chr4 15534626 15534700 -168753962 - MER6 DNA MER2_type -168 697 611 25 0 0 0 chr4 15534719 15534744 -168753918 + AT_rich Low_complexity Low_complexity 1 25 0 519 241 28 0 chr4 15534747 15534855 -168753807 + MER5A DNA MER1_type 61 171 -18 886 146 6 30 chr4 15535509 15535673 -168752989 + L1MB4 LINE L1 6015 6174 -6 1918 116 32 25 chr4 15536610 15536894 -168751768 + AluSx SINE Alu 1 286 -26 26 0 0 0 chr4 15536900 15536926 -168751736 + AT_rich Low_complexity Low_complexity 1 26 0 1715 201 83 47 chr4 15537379 15537826 -168750836 - MLT1C LTR MaLR -4 463 1 404 217 0 0 chr4 15538067 15538136 -168750526 - MER117 DNA MER1_type -84 113 45 22 0 0 0 chr4 15540426 15540448 -168748214 + AT_rich Low_complexity Low_complexity 1 22 0 2006 143 0 3 chr4 15541398 15541691 -168746971 + AluJo SINE Alu 1 292 -20 2407 126 27 8 chr4 15542747 15543121 -168745541 - L1MA4 LINE L1 -5 6295 5915 354 143 79 0 chr4 15543121 15543184 -168745478 + MER20 DNA MER1_type 117 184 -35 2226 113 6 0 chr4 15543330 15543641 -168745021 + AluSp SINE Alu 1 313 0 201 316 0 32 chr4 15544031 15544126 -168744536 + MIR SINE MIR 164 255 -7 1082 207 128 20 chr4 15544409 15544801 -168743861 + L1MC5 LINE L1 7480 7913 -48 1996 111 0 0 chr4 15545114 15545385 -168743277 + AluSx SINE Alu 23 293 -19 599 318 28 14 chr4 15546709 15546923 -168741739 + L1ME LINE L1 5523 5739 -382 605 237 79 91 chr4 15546947 15547440 -168741222 - L1MEd LINE L1 -4968 1151 665 449 298 20 33 chr4 15547475 15547626 -168741036 + MIR SINE MIR 39 187 -75 362 205 12 12 chr4 15547787 15547870 -168740792 - MIR SINE MIR 0 262 180 462 261 33 61 chr4 15547876 15548121 -168740541 + L2 LINE L2 2916 3153 -160 336 255 19 38 chr4 15548263 15548369 -168740293 + L2 LINE L2 3210 3313 0 * 382 264 20 47 chr4 15548347 15548495 -168740167 - MIR SINE MIR -49 213 70 273 209 149 0 chr4 15549121 15549188 -168739474 - MIR SINE MIR -73 189 113 297 289 15 81 chr4 15549392 15549529 -168739133 + MIR SINE MIR 23 151 -57 1871 151 7 10 chr4 15549962 15550253 -168738409 + AluSx SINE Alu 1 290 -22 266 276 46 11 chr4 15550862 15550949 -168737713 + MIR SINE MIR 11 100 -162 1848 169 10 3 chr4 15551028 15551330 -168737332 + AluJb SINE Alu 1 304 -8 274 203 54 14 chr4 15551422 15551496 -168737166 - MIR SINE MIR -114 148 72 347 278 82 76 chr4 15553879 15554170 -168734492 - MLT1K LTR MaLR 0 588 296 197 267 111 33 chr4 15554869 15554959 -168733703 + MIR SINE MIR 36 132 -130 186 43 0 0 chr4 15555242 15555265 -168733397 + (TTCC)n Simple_repeat Simple_repeat 2 24 0 234 0 0 0 chr4 15555375 15555401 -168733261 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1782 156 0 34 chr4 15555408 15555703 -168732959 - AluJb SINE Alu -27 285 1 374 266 81 8 chr4 15555812 15555936 -168732726 - L2 LINE L2 0 3313 3181 21 0 0 0 chr4 15556226 15556247 -168732415 + AT_rich Low_complexity Low_complexity 1 21 0 211 219 0 0 chr4 15557110 15557151 -168731511 + T-rich Low_complexity Low_complexity 5 45 0 486 292 103 17 chr4 15557410 15557643 -168731019 + MIR SINE MIR 7 259 -3 684 255 90 5 chr4 15558166 15558378 -168730284 - MIR SINE MIR -3 259 30 21 71 0 0 chr4 15612365 15612407 -168676255 + AT_rich Low_complexity Low_complexity 1 42 0 2389 94 0 0 chr4 15612669 15612967 -168675695 - AluSg SINE Alu -9 301 4 181 255 94 47 chr4 15613301 15613407 -168675255 + MIR SINE MIR 137 247 -15 357 62 0 0 chr4 15614394 15614442 -168674220 + (CA)n Simple_repeat Simple_repeat 2 49 0 577 142 0 19 chr4 15614569 15614675 -168673987 - L1MA4 LINE L1 0 6300 6197 608 316 55 38 chr4 15615015 15615306 -168673356 + L2 LINE L2 2999 3294 -19 26 0 0 0 chr4 15616130 15616156 -168672506 + AT_rich Low_complexity Low_complexity 1 26 0 10414 55 10 0 chr4 15616559 15618655 -168670007 - L1PA6 LINE L1 -4 6150 4041 1681 154 3 30 chr4 15619241 15619539 -168669123 - AluSx SINE Alu -22 290 1 964 191 53 14 chr4 15619572 15619781 -168668881 - MER20 DNA MER1_type -1 218 2 1184 171 0 45 chr4 15619823 15619993 -168668669 - AluJb SINE Alu -14 298 139 2390 84 3 3 chr4 15619993 15620304 -168668358 - AluSx SINE Alu -1 311 1 1184 171 0 45 chr4 15620304 15620355 -168668307 - AluJb SINE Alu -173 139 87 24 32 0 0 chr4 15620477 15620508 -168668154 + AT_rich Low_complexity Low_complexity 1 31 0 2170 102 10 3 chr4 15620687 15620982 -168667680 + AluSq SINE Alu 1 297 -16 2233 120 3 0 chr4 15621109 15621418 -168667244 + AluSq SINE Alu 1 310 -3 36 70 0 0 chr4 15621688 15621759 -168666903 + AT_rich Low_complexity Low_complexity 1 71 0 326 217 60 0 chr4 15621813 15621896 -168666766 - L1MC5 LINE L1 -65 7896 7809 2220 111 3 0 chr4 15623779 15624086 -168664576 + AluSp SINE Alu 1 308 -5 233 320 105 70 chr4 15624386 15624558 -168664104 + MER5B DNA MER1_type 1 178 0 334 263 36 124 chr4 15624573 15624767 -168663895 - MER5B DNA MER1_type 0 178 2 1697 181 3 16 chr4 15624937 15625241 -168663421 - AluJo SINE Alu -12 300 1 24 32 0 0 chr4 15626044 15626075 -168662587 + AT_rich Low_complexity Low_complexity 1 31 0 2467 140 11 36 chr4 15626180 15626624 -168662038 + Tigger2a DNA MER2_type 2 434 0 1875 138 0 4 chr4 15626643 15626919 -168661743 + AluSx SINE Alu 2 276 -36 338 306 126 46 chr4 15627107 15627272 -168661390 - L3 LINE CR1 -121 1456 1261 1929 134 31 10 chr4 15627272 15627563 -168661099 - AluSx SINE Alu -15 297 1 338 306 126 46 chr4 15627563 15627658 -168661004 - L3 LINE CR1 -316 1261 1175 263 333 79 45 chr4 15627604 15627895 -168660767 + L2 LINE L2 2075 2375 -939 * 1527 124 55 0 chr4 15628515 15628732 -168659930 - AluSq SINE Alu -83 230 2 1710 211 62 27 chr4 15628972 15629422 -168659240 + MER31B LTR ERV1 1 466 0 387 272 34 48 chr4 15630378 15630450 -168658212 + MIR SINE MIR 32 103 -159 2293 99 0 3 chr4 15630450 15630753 -168657909 - AluSg SINE Alu -8 302 1 387 272 34 48 chr4 15630753 15630827 -168657835 + MIR SINE MIR 103 176 -86 21 36 0 0 chr4 15630860 15630888 -168657774 + AT_rich Low_complexity Low_complexity 1 28 0 556 219 12 98 chr4 15630907 15631071 -168657591 - L2 LINE L2 -13 3300 3151 1450 197 35 14 chr4 15631073 15631377 -168657285 - MER58B DNA MER1_type 0 341 29 2356 26 10 20 chr4 15631571 15631877 -168656785 - L1PA4 LINE L1 0 6155 5853 2419 103 0 0 chr4 15631969 15632281 -168656381 + AluSx SINE Alu 1 312 0 1201 147 5 43 chr4 15632323 15632534 -168656128 - MER2 DNA MER2_type -142 203 1 705 209 143 61 chr4 15632745 15632898 -168655764 + MIR SINE MIR 7 181 -81 1771 151 10 20 chr4 15632898 15633190 -168655472 - AluJo SINE Alu -23 289 1 705 209 143 61 chr4 15633190 15633232 -168655430 + MIR SINE MIR 181 218 -44 4035 151 40 1 chr4 15633324 15634057 -168654605 + L1MA9 LINE L1 5552 6312 0 2066 93 29 39 chr4 15634331 15634643 -168654019 + AluSc SINE Alu 1 309 0 375 299 123 0 chr4 15634789 15634943 -168653719 - MIR SINE MIR -31 231 59 847 201 39 6 chr4 15635108 15635287 -168653375 + MER20 DNA MER1_type 30 214 -5 370 279 91 30 chr4 15635343 15635540 -168653122 + MER112 DNA MER1_type 51 259 -1 493 72 0 0 chr4 15635691 15635760 -168652902 - AluSg1 SINE Alu -4 306 238 1499 96 15 0 chr4 15635763 15635961 -168652701 - AluSg1 SINE Alu -108 201 1 258 291 100 36 chr4 15636192 15636302 -168652360 - MIR3 SINE MIR -30 178 62 365 248 97 35 chr4 15636351 15636496 -168652166 + MIR SINE MIR 51 204 -58 21 36 0 0 chr4 15636737 15636765 -168651897 + AT_rich Low_complexity Low_complexity 1 28 0 247 346 70 33 chr4 15637318 15637492 -168651170 + MIR3 SINE MIR 10 184 -67 414 264 138 25 chr4 15638827 15638986 -168649676 - MER5B DNA MER1_type -1 177 1 247 315 45 11 chr4 15641610 15641699 -168646963 + L2 LINE L2 3162 3253 -19 611 256 149 5 chr4 15641796 15641991 -168646671 + MIR SINE MIR 1 223 -39 180 318 27 64 chr4 15642042 15642152 -168646510 - MIR SINE MIR -133 129 24 333 274 186 0 chr4 15642439 15642541 -168646121 + L2 LINE L2 3193 3313 0 2848 102 39 0 chr4 15643535 15643947 -168644715 + MSTC LTR MaLR 1 428 0 1791 164 7 17 chr4 15645270 15645569 -168643093 - AluJo SINE Alu -16 296 1 228 172 46 115 chr4 15645839 15645926 -168642736 + MER94 DNA DNA 30 110 -24 2102 122 7 0 chr4 15645984 15646278 -168642384 + AluSx SINE Alu 1 296 -16 224 202 275 0 chr4 15646513 15646622 -168642040 + MIR SINE MIR 121 259 -3 208 323 0 0 chr4 15646613 15646678 -168641984 + MIR3 SINE MIR 121 185 -23 * 320 175 0 75 chr4 15646764 15646840 -168641822 - MLT1J LTR MaLR -19 492 423 1589 226 41 85 chr4 15646840 15647402 -168641260 - MLT1F LTR MaLR 0 542 6 445 290 71 7 chr4 15647518 15647673 -168640989 + MIR SINE MIR 82 246 -16 187 238 0 0 chr4 15648457 15648499 -168640163 + MIR SINE MIR 217 258 -4 230 239 73 73 chr4 15648613 15648722 -168639940 + MIR SINE MIR 12 120 -142 403 269 29 0 chr4 15648782 15648886 -168639776 + MIR SINE MIR 128 234 -28 640 306 50 22 chr4 15649097 15649319 -168639343 - MIR SINE MIR -33 229 2 2460 82 0 3 chr4 15649738 15650043 -168638619 - AluSq SINE Alu -6 307 4 22 35 0 0 chr4 15650840 15650869 -168637793 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 15651204 15651225 -168637437 + AT_rich Low_complexity Low_complexity 1 21 0 1789 166 0 3 chr4 15651306 15651602 -168637060 + AluJo SINE Alu 3 297 -15 1113 127 68 14 chr4 15651602 15651822 -168636840 + L1MA7 LINE L1 5899 6130 -161 1049 178 56 5 chr4 15651822 15652019 -168636643 + AluJb SINE Alu 87 293 -19 796 155 6 25 chr4 15652032 15652193 -168636469 + L1MA7 LINE L1 6128 6285 -6 208 242 30 45 chr4 15652442 15652508 -168636154 + MIR SINE MIR 188 252 -10 2272 75 4 0 chr4 15652963 15653244 -168635418 + AluSp SINE Alu 17 298 -15 201 191 29 29 chr4 15653643 15653711 -168634951 + T-rich Low_complexity Low_complexity 4 71 0 1438 180 75 7 chr4 15654302 15654608 -168634054 - MER7A DNA MER2_type -9 337 13 336 135 77 0 chr4 15654676 15654728 -168633934 + Alu SINE Alu 236 291 -11 303 231 22 55 chr4 15654740 15654831 -168633831 - L1MC5 LINE L1 -49 7912 7825 1021 213 82 28 chr4 15655278 15655560 -168633102 - L1ME1 LINE L1 -328 5907 5611 703 210 97 5 chr4 15655566 15655761 -168632901 - L1ME1 LINE L1 -3905 2491 2279 237 150 0 260 chr4 15655775 15655875 -168632787 + MER20 DNA MER1_type 1 74 -145 * 268 222 0 91 chr4 15655864 15655963 -168632699 - MER58 DNA MER1_type -226 115 26 1201 259 116 51 chr4 15655963 15656100 -168632562 - L1ME1 LINE L1 -4647 1749 1622 2424 98 0 0 chr4 15656100 15656407 -168632255 - AluSx SINE Alu -5 307 1 1201 259 116 51 chr4 15656407 15656629 -168632033 - L1ME1 LINE L1 -4774 1622 1416 874 135 0 8 chr4 15656629 15656755 -168631907 - FLAM_C SINE Alu -6 127 3 1201 259 116 51 chr4 15656755 15657104 -168631558 - L1ME1 LINE L1 -4980 1416 994 1653 214 32 3 chr4 15657146 15657492 -168631170 - L1ME1 LINE L1 -5529 867 512 3419 134 105 29 chr4 15657504 15658343 -168630319 - Tigger3(Golem) DNA MER2_type 0 3028 2254 1814 170 7 3 chr4 15658343 15658643 -168630019 + AluJb SINE Alu 1 301 -11 3419 134 105 29 chr4 15658643 15658807 -168629855 - Tigger3(Golem) DNA MER2_type -774 2254 1 1393 265 65 8 chr4 15658812 15659197 -168629465 - L1ME1 LINE L1 -5903 493 87 21 0 0 0 chr4 15659388 15659409 -168629253 + AT_rich Low_complexity Low_complexity 1 21 0 2439 75 0 0 chr4 15659839 15660133 -168628529 - AluY SINE Alu -17 294 1 2299 110 0 3 chr4 15660757 15661065 -168627597 - AluSq SINE Alu -6 307 1 326 298 19 29 chr4 15661190 15661294 -168627368 + MIR3 SINE MIR 58 160 -48 312 240 32 75 chr4 15661451 15661991 -168626671 + L1MC5 LINE L1 7299 7923 -38 2120 214 88 102 chr4 15662439 15663204 -168625458 + MER21B LTR ERV1 1 754 -109 2261 83 38 0 chr4 15664247 15664535 -168624127 - AluSc SINE Alu -10 299 1 26 0 0 0 chr4 15664774 15664800 -168623862 + GC_rich Low_complexity Low_complexity 1 26 0 834 262 122 33 chr4 15665052 15665502 -168623160 + L1MC4a LINE L1 5533 6022 -1786 2215 79 3 26 chr4 15665639 15665944 -168622718 + AluSx SINE Alu 1 298 -14 230 256 13 0 chr4 15666153 15666231 -168622431 + (TA)n Simple_repeat Simple_repeat 2 80 0 288 250 74 40 chr4 15667776 15667924 -168620738 - L1ME2 LINE L1 -244 5920 5768 197 210 113 16 chr4 15667924 15667986 -168620676 + L2 LINE L2 3202 3269 -3 180 353 98 0 chr4 15667992 15668114 -168620548 - L2 LINE L2 -242 3030 2897 466 299 149 9 chr4 15668425 15668646 -168620016 + L2 LINE L2 1273 1524 -1790 1603 209 104 65 chr4 15670399 15670936 -168617726 - MER74A LTR ERVL 0 558 1 435 262 63 0 chr4 15671743 15671869 -168616793 - MER112 DNA MER1_type 0 260 127 363 322 36 39 chr4 15673089 15673576 -168615086 + Charlie1 DNA MER1_type 1259 1918 -843 29 28 0 0 chr4 15674306 15674342 -168614320 + AT_rich Low_complexity Low_complexity 1 36 0 541 252 87 34 chr4 15674343 15674549 -168614113 - L2 LINE L2 -5 3308 3092 * 668 297 32 0 chr4 15674518 15674703 -168613959 - L2 LINE L2 -450 2864 2674 1773 172 0 10 chr4 15674744 15675034 -168613628 + AluJo SINE Alu 3 289 -23 218 231 0 58 chr4 15675235 15675287 -168613375 + L2 LINE L2 3224 3272 0 521 298 60 24 chr4 15675892 15676140 -168612522 + LTR40b LTR ERVL 125 381 -81 565 152 22 11 chr4 15676149 15676241 -168612421 - MLT1D LTR MaLR -408 97 5 3528 203 69 127 chr4 15676246 15677034 -168611628 - MLT1D-int LTR MaLR -3 1368 698 334 148 0 0 chr4 15677034 15677095 -168611567 + L1MB3 LINE L1 6121 6181 -2 3528 203 69 127 chr4 15677095 15677731 -168610931 - MLT1D-int LTR MaLR -673 698 27 2298 210 53 14 chr4 15677943 15678429 -168610233 - MLT1D LTR MaLR 0 505 1 677 219 121 6 chr4 15678845 15679192 -168609470 - L1MB8 LINE L1 -239 5939 5284 1315 207 151 54 chr4 15679212 15679695 -168608967 - LTR10B LTR ERV1 -5 542 13 5415 238 13 22 chr4 15679721 15680967 -168607695 - HERVI LTR ERV1 -2 7783 6549 869 246 131 21 chr4 15680968 15681305 -168607357 - MER50 LTR ERV1 -349 385 12 295 138 103 0 chr4 15681323 15681381 -168607281 - MER30 DNA MER1_type -111 119 56 407 69 222 0 chr4 15681397 15681469 -168607193 - MER30 DNA MER1_type -142 88 1 547 200 62 0 chr4 15681471 15681601 -168607061 - L1MB8 LINE L1 -880 5266 5129 1014 158 4 61 chr4 15681629 15681727 -168606935 + MER63 DNA MER1_type 822 924 -137 2320 91 0 3 chr4 15681727 15682025 -168606637 - AluY SINE Alu -14 297 1 1014 158 4 61 chr4 15682025 15682154 -168606508 + MER63 DNA MER1_type 924 1036 -25 495 169 22 0 chr4 15682169 15682258 -168606404 - L1MC5 LINE L1 -564 7397 7307 180 152 0 0 chr4 15682258 15682291 -168606371 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 1017 266 146 71 chr4 15682434 15682956 -168605706 + HAL1 LINE L1 90 674 -1833 2483 84 0 7 chr4 15682956 15683266 -168605396 + AluY SINE Alu 1 308 -3 1017 266 146 71 chr4 15683266 15683409 -168605253 + HAL1 LINE L1 674 805 -1702 1645 107 18 14 chr4 15683413 15683702 -168604960 + THE1B LTR MaLR 1 374 -1 1370 200 100 147 chr4 15683737 15683954 -168604708 + HAL1 LINE L1 839 1065 -1442 342 45 0 0 chr4 15683954 15683998 -168604664 + (TA)n Simple_repeat Simple_repeat 1 44 0 1370 200 100 147 chr4 15683998 15684746 -168603916 + HAL1 LINE L1 1065 1759 -748 2776 59 0 85 chr4 15684747 15685135 -168603527 - THE1A LTR MaLR 0 355 1 1367 84 31 0 chr4 15685135 15685326 -168603336 - THE1A-int LTR MaLR 0 1580 1384 228 211 18 0 chr4 15685321 15685378 -168603284 + HAL1 LINE L1 2036 2093 -414 * 2020 153 67 28 chr4 15685433 15685656 -168603006 - MSTA LTR MaLR 0 428 182 2170 82 30 33 chr4 15685656 15685960 -168602702 - AluSc SINE Alu -6 303 1 2020 153 67 28 chr4 15685960 15686127 -168602535 - MSTA LTR MaLR -246 182 23 493 75 12 50 chr4 15686140 15686220 -168602442 + MER4A LTR ERV1 22 98 -566 2032 113 6 30 chr4 15686220 15686574 -168602088 + MER4A LTR ERV1 261 664 0 358 203 14 0 chr4 15686574 15686648 -168602014 + HAL1 LINE L1 2324 2398 -109 2496 60 0 0 chr4 15686853 15687152 -168601510 - AluY SINE Alu -12 299 1 270 316 53 45 chr4 15687211 15687230 -168601432 + MIR SINE MIR 84 101 -161 1667 207 30 9 chr4 15687230 15687564 -168601098 + MER2 DNA MER2_type 1 341 -3 270 316 53 45 chr4 15687564 15687677 -168600985 + MIR SINE MIR 101 217 -45 1685 149 6 37 chr4 15687923 15688245 -168600417 - AluJb SINE Alu 0 312 1 207 152 0 0 chr4 15688429 15688475 -168600187 + (CTG)n Simple_repeat Simple_repeat 1 46 0 27 29 0 0 chr4 15688475 15688509 -168600153 + GC_rich Low_complexity Low_complexity 1 34 0 320 234 19 32 chr4 15688889 15689047 -168599615 + (TG)n Simple_repeat Simple_repeat 2 157 0 233 250 41 23 chr4 15689223 15689395 -168599267 + (TG)n Simple_repeat Simple_repeat 1 175 0 226 230 40 27 chr4 15689656 15689804 -168598858 + (TG)n Simple_repeat Simple_repeat 1 150 0 2011 144 150 5 chr4 15691068 15691442 -168597220 - MSTA LTR MaLR 0 428 1 253 343 105 19 chr4 15692067 15692172 -168596490 - L2 LINE L2 -8 3264 3151 461 282 43 31 chr4 15692313 15692476 -168596186 - MIR SINE MIR -50 212 48 193 272 25 37 chr4 15692945 15693026 -168595636 - MIR SINE MIR -26 236 157 216 0 0 0 chr4 15693090 15693114 -168595548 + (TC)n Simple_repeat Simple_repeat 2 25 0 245 207 46 0 chr4 15693114 15693201 -168595461 - L1MC4 LINE L1 -1339 6703 6613 637 208 161 10 chr4 15693201 15693368 -168595294 - MIR SINE MIR -36 172 3 277 282 161 32 chr4 15693368 15693492 -168595170 - MIR SINE MIR -110 152 13 1956 139 3 7 chr4 15693858 15694153 -168594509 + AluSx SINE Alu 1 294 -18 1112 258 123 47 chr4 15694190 15694722 -168593940 - L2 LINE L2 0 3313 2741 189 0 0 0 chr4 15695207 15695228 -168593434 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 1607 177 25 7 chr4 15695246 15695529 -168593133 - AluJo SINE Alu -24 288 1 21 0 0 0 chr4 15695536 15695557 -168593105 + AT_rich Low_complexity Low_complexity 1 21 0 3480 131 63 0 chr4 15695557 15696049 -168592613 - L1MA6 LINE L1 0 6300 5767 2227 129 0 0 chr4 15696049 15696351 -168592311 - AluSx SINE Alu -10 302 1 3480 131 63 0 chr4 15696351 15696417 -168592245 - L1MA6 LINE L1 -533 5767 5707 343 324 97 0 chr4 15697239 15697384 -168591278 + MIR SINE MIR 100 258 -4 2158 88 81 0 chr4 15698460 15698745 -168589917 - AluSc SINE Alu -1 308 1 678 313 16 0 chr4 15698751 15698933 -168589729 - MIR SINE MIR -74 188 4 2019 161 0 0 chr4 15698954 15699265 -168589397 - AluSx SINE Alu -1 311 1 22 0 0 0 chr4 15699273 15699295 -168589367 + AT_rich Low_complexity Low_complexity 1 22 0 284 260 53 65 chr4 15699750 15699919 -168588743 - L1ME LINE L1 -268 5853 5687 1186 265 122 3 chr4 15699929 15700291 -168588371 + MLT1I LTR MaLR 3 407 -2 266 276 121 29 chr4 15700299 15700473 -168588189 - L1ME LINE L1 -500 5666 5477 1988 110 0 15 chr4 15702069 15702341 -168586321 - AluSq SINE Alu -45 268 1 316 249 18 91 chr4 15702765 15702930 -168585732 + L1ME4a LINE L1 5530 5682 -439 3006 101 12 0 chr4 15702949 15703366 -168585296 - MER83 LTR ERV1 -26 422 1 219 36 0 0 chr4 15703506 15703534 -168585128 + (TG)n Simple_repeat Simple_repeat 2 29 0 412 150 124 93 chr4 15703561 15703754 -168584908 + L1ME4a LINE L1 5882 6080 -41 185 214 71 0 chr4 15704674 15704716 -168583946 - MIR SINE MIR 0 262 218 764 281 35 4 chr4 15705231 15705462 -168583200 - L1ME3A LINE L1 -7 6163 5926 1966 93 64 4 chr4 15705594 15705874 -168582788 + AluSg SINE Alu 1 297 -13 1096 164 0 0 chr4 15705902 15706061 -168582601 + FRAM SINE Alu 1 159 -7 569 141 0 0 chr4 15706703 15706781 -168581881 - AluJ/FLAM SINE Alu -233 79 2 2053 90 3 40 chr4 15707296 15707597 -168581065 - AluY SINE Alu -21 290 1 817 250 45 45 chr4 15707964 15708316 -168580346 - SVA Other Other -573 813 462 2890 229 25 21 chr4 15709863 15710896 -168577766 - L1PA15-16 LINE L1 -3117 3732 2694 2133 169 0 3 chr4 15710915 15711252 -168577410 + MER75 DNA T2_type 6 341 -173 25 0 0 0 chr4 15711550 15711575 -168577087 + AT_rich Low_complexity Low_complexity 1 25 0 238 364 93 0 chr4 15712732 15712872 -168575790 + MIR SINE MIR 108 260 -2 489 363 28 4 chr4 15712889 15713140 -168575522 - MIR SINE MIR 0 262 6 370 302 251 15 chr4 15715204 15715535 -168573127 - MLT1I LTR MaLR 0 409 1 30 45 0 0 chr4 15715552 15715596 -168573066 + AT_rich Low_complexity Low_complexity 1 44 0 1683 246 197 3 chr4 15716227 15716791 -168571871 - L1M3e LINE L1 -5297 1733 1061 31 26 0 0 chr4 15717254 15717292 -168571370 + AT_rich Low_complexity Low_complexity 1 38 0 1898 192 97 8 chr4 15717743 15718134 -168570528 - MSTA LTR MaLR 0 428 3 2362 191 62 42 chr4 15718136 15718655 -168570007 - MSTA-int LTR MaLR 0 1651 1123 1202 50 0 0 chr4 15719002 15719141 -168569521 + MER85 DNA T2_type 1 139 0 250 195 274 71 chr4 15720350 15720429 -168568233 + MIR SINE MIR 117 179 -83 1108 170 85 122 chr4 15720429 15720805 -168567857 - MLT1A1 LTR MaLR 0 365 4 250 195 274 71 chr4 15720805 15720838 -168567824 + MIR SINE MIR 179 252 -10 32 43 0 0 chr4 15721061 15721107 -168567555 + AT_rich Low_complexity Low_complexity 1 46 0 203 262 66 16 chr4 15721442 15721503 -168567159 - MIR SINE MIR -72 190 127 5955 108 3 21 chr4 15721945 15722429 -168566233 - THE1-int LTR MaLR -737 843 379 1755 135 0 4 chr4 15722429 15722681 -168565981 + AluSc SINE Alu 50 300 -9 5955 108 3 21 chr4 15722681 15723050 -168565612 - THE1-int LTR MaLR -1201 379 5 2117 107 72 9 chr4 15723053 15723372 -168565290 - MLT2A2 LTR ERVL -5 448 110 454 288 22 84 chr4 15723713 15723939 -168564723 + MIR SINE MIR 30 241 -21 1862 214 80 78 chr4 15725263 15725716 -168562946 - L1MC/D LINE L1 -743 5403 4953 1842 179 0 10 chr4 15725716 15726029 -168562633 + AluJb SINE Alu 3 312 0 1862 214 80 78 chr4 15726029 15726737 -168561925 - L1MC/D LINE L1 -1193 4953 4404 2194 96 6 13 chr4 15726869 15727182 -168561480 + AluY SINE Alu 1 311 0 1008 142 25 0 chr4 15728581 15728743 -168559919 + L1M1 LINE L1 22 187 -7378 2006 144 3 0 chr4 15728969 15729267 -168559395 + AluSx SINE Alu 1 299 -13 535 220 15 45 chr4 15729520 15729534 -168559128 + MIR SINE MIR 27 40 -222 632 216 22 30 chr4 15729534 15729668 -168558994 - MER94 DNA DNA -1 133 1 535 220 15 45 chr4 15729668 15729785 -168558877 + MIR SINE MIR 40 154 -108 407 291 142 79 chr4 15730254 15730635 -168558027 + L2 LINE L2 2898 3302 -11 359 361 83 25 chr4 15730724 15731048 -168557614 + L2 LINE L2 1072 1414 -1900 278 260 70 83 chr4 15731511 15731668 -168556994 - MIR3 SINE MIR -16 192 44 480 164 0 14 chr4 15731709 15731782 -168556880 - FRAM/FAM SINE Alu -110 66 1 7868 67 3 9 chr4 15732032 15733007 -168555655 + LTR5 LTR ERVK 1 969 0 187 200 0 25 chr4 15733354 15733394 -168555268 - MER5A DNA MER1_type -115 74 36 261 329 0 0 chr4 15733571 15733650 -168555012 + L2 LINE L2 3184 3262 -10 416 180 205 16 chr4 15735051 15735173 -168553489 + MIR SINE MIR 112 256 -6 1871 91 8 0 chr4 15737210 15737464 -168551198 - L1MA2 LINE L1 -1 6303 6048 531 207 212 43 chr4 15738229 15738456 -168550206 - L1MC4a LINE L1 -400 7460 7174 1850 166 0 13 chr4 15738456 15738758 -168549904 + AluJb SINE Alu 2 299 -13 531 207 212 43 chr4 15738758 15738831 -168549831 - L1MC4a LINE L1 -686 7174 7115 435 222 10 0 chr4 15739844 15739945 -168548717 - MIR SINE MIR -68 140 34 411 351 75 41 chr4 15739951 15740338 -168548324 + L2 LINE L2 2824 3223 -49 2344 108 12 122 chr4 15740406 15740580 -168548082 + HSMAR2 DNA Mariner 2 193 -1109 1866 168 0 7 chr4 15740580 15740878 -168547784 + AluJb SINE Alu 1 296 -16 2344 108 12 122 chr4 15740878 15740964 -168547698 + HSMAR2 DNA Mariner 193 287 -1015 2362 72 7 0 chr4 15740964 15741255 -168547407 - AluSg SINE Alu -17 293 1 2344 108 12 122 chr4 15741255 15741476 -168547186 + HSMAR2 DNA Mariner 287 431 -871 28 61 0 0 chr4 15741476 15741525 -168547137 + AT_rich Low_complexity Low_complexity 1 49 0 32 43 0 0 chr4 15741749 15741795 -168546867 + AT_rich Low_complexity Low_complexity 1 46 0 429 213 11 11 chr4 15743547 15743641 -168545021 + MLT2C1 LTR ERVL 29 122 -275 2050 129 14 14 chr4 15743732 15744026 -168544636 + AluSx SINE Alu 2 295 -17 1388 139 52 36 chr4 15744031 15744283 -168544379 + MLT2C1 LTR ERVL 142 397 0 922 301 86 10 chr4 15745705 15746091 -168542571 - MLT1J2 LTR MaLR 0 450 36 194 265 0 0 chr4 15746226 15746260 -168542402 - L2 LINE L2 -29 3243 3210 870 154 122 0 chr4 15747770 15747926 -168540736 + FRAM SINE Alu 1 172 -4 3883 173 45 48 chr4 15748069 15748644 -168540018 - Charlie1a DNA MER1_type -1326 1435 863 868 231 0 0 chr4 15748644 15748804 -168539858 - L1PB4 LINE L1 -7 6149 5990 3883 173 45 48 chr4 15748804 15749121 -168539541 - Charlie1a DNA MER1_type -1898 863 546 1261 179 4 45 chr4 15749123 15749369 -168539293 + AluJo SINE Alu 1 236 -76 227 214 0 0 chr4 15749387 15749429 -168539233 - Charlie1a DNA MER1_type -918 537 496 198 0 0 0 chr4 15749429 15749451 -168539211 + (TA)n Simple_repeat Simple_repeat 2 23 0 943 198 153 36 chr4 15749552 15749800 -168538862 - AluJo SINE Alu -35 277 1 1812 221 119 7 chr4 15749808 15750255 -168538407 - Charlie1a DNA MER1_type -958 497 1 204 81 0 54 chr4 15750359 15750396 -168538266 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 255 303 154 53 chr4 15750508 15750696 -168537966 - MIR SINE MIR 0 262 56 1934 112 0 0 chr4 15751581 15751839 -168536823 - AluSx SINE Alu -54 258 1 2217 96 0 0 chr4 15752594 15752902 -168535760 + AluSg SINE Alu 1 308 0 318 250 0 0 chr4 15753096 15753168 -168535494 - L1M4 LINE L1 -2461 3685 3614 2222 85 4 0 chr4 15753274 15753581 -168535081 + AluY SINE Alu 1 308 0 376 181 60 0 chr4 15755217 15755300 -168533362 - LTR16C LTR ERVL 0 491 404 187 289 21 62 chr4 15755300 15755397 -168533265 + MER5A DNA MER1_type 69 161 -28 205 311 14 14 chr4 15755758 15755832 -168532830 - L2 LINE L2 -555 2759 2686 289 308 0 56 chr4 15756999 15757142 -168531520 - MIR SINE MIR -5 257 123 250 295 47 39 chr4 15757544 15757673 -168530989 - MIR SINE MIR -11 251 122 226 264 14 0 chr4 15758034 15758106 -168530556 - LTR66 LTR ERVL -159 451 379 1730 98 150 11 chr4 15758126 15758392 -168530270 + AluSg1 SINE Alu 1 303 -6 233 233 11 0 chr4 15760291 15760381 -168528281 + CT-rich Low_complexity Low_complexity 2 92 0 2178 118 0 0 chr4 15760914 15761211 -168527451 - AluSx SINE Alu -15 297 1 623 208 66 56 chr4 15762582 15762779 -168525883 - L1ME LINE L1 -460 5661 5463 2192 107 7 3 chr4 15763307 15763605 -168525057 + AluSq SINE Alu 1 299 -14 231 36 0 0 chr4 15763607 15763635 -168525027 + (GA)n Simple_repeat Simple_repeat 2 29 0 660 251 284 22 chr4 15763654 15764013 -168524649 + MLT1J LTR MaLR 14 466 -45 312 230 95 40 chr4 15764036 15764162 -168524500 - MIR SINE MIR -90 172 40 1215 139 4 94 chr4 15764850 15765095 -168523567 - AluJb SINE Alu -5 307 85 374 282 0 57 chr4 15765103 15765227 -168523435 + L2 LINE L2 3172 3288 -25 285 98 0 0 chr4 15765228 15765269 -168523393 + (TGAA)n Simple_repeat Simple_repeat 2 42 0 234 185 0 56 chr4 15765303 15765357 -168523305 - LTR67 LTR ERVL -506 51 1 1071 54 0 0 chr4 15765774 15765903 -168522759 - AluSg/x SINE Alu -12 300 172 261 341 110 16 chr4 15765909 15766091 -168522571 - MIR SINE MIR -9 253 55 578 307 95 45 chr4 15766379 15766842 -168521820 + L1ME LINE L1 5339 5824 -297 1038 180 0 6 chr4 15767344 15767527 -168521135 - AluJb SINE Alu -1 311 130 2012 139 7 10 chr4 15767547 15767848 -168520814 - AluSx SINE Alu -12 300 1 30 45 0 0 chr4 15768012 15768056 -168520606 + AT_rich Low_complexity Low_complexity 1 44 0 1568 187 0 18 chr4 15768078 15768383 -168520279 + AluJb SINE Alu 7 306 0 413 299 48 7 chr4 15769334 15769481 -168519181 + L1MC4a LINE L1 5742 5894 -1914 2225 109 3 0 chr4 15771226 15771520 -168517142 - AluSq SINE Alu -18 295 1 582 101 0 101 chr4 15771597 15771696 -168516966 - MSTA LTR MaLR 0 428 340 1621 98 197 203 chr4 15771729 15772418 -168516244 - pTR5 LTR ERV1 -158 2025 57 231 235 0 0 chr4 15772418 15772469 -168516193 - LTR30 LTR ERV1 -670 52 2 * 1820 126 114 6 chr4 15772469 15772781 -168515881 - MSTA LTR MaLR -82 346 1 1486 226 55 30 chr4 15772816 15773254 -168515408 + L1ME1 LINE L1 5703 6146 -20 239 214 29 14 chr4 15773242 15773312 -168515350 + L1ME LINE L1 5799 5869 -252 * 30 0 0 0 chr4 15773357 15773387 -168515275 + AT_rich Low_complexity Low_complexity 1 30 0 1806 172 76 11 chr4 15773387 15773741 -168514921 - LOR1a LTR ERV1 -120 377 1 239 294 88 57 chr4 15773930 15774124 -168514538 + L2 LINE L2 2860 3059 -213 253 268 72 58 chr4 15775058 15775196 -168513466 + L2 LINE L2 2620 2759 -555 1965 132 35 0 chr4 15775239 15775527 -168513135 + AluSx SINE Alu 1 298 -14 585 293 105 21 chr4 15775862 15776101 -168512561 + MIR SINE MIR 2 260 -2 516 282 20 0 chr4 15776182 15776331 -168512331 - MIR SINE MIR -26 236 85 183 318 15 30 chr4 15776437 15776503 -168512159 + L2 LINE L2 3248 3312 -1 1852 153 6 26 chr4 15776895 15777208 -168511454 + L1MC1 LINE L1 6027 6333 0 207 0 0 0 chr4 15777478 15777501 -168511161 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 450 0 0 0 chr4 15778456 15778506 -168510156 + (TG)n Simple_repeat Simple_repeat 2 51 0 423 214 0 0 chr4 15778800 15778931 -168509731 + GA-rich Low_complexity Low_complexity 1 131 0 1722 156 3 14 chr4 15778983 15779266 -168509396 - AluSx SINE Alu -32 280 1 281 308 29 122 chr4 15779333 15779505 -168509157 - L2 LINE L2 -188 3084 2929 23 68 0 0 chr4 15779543 15779587 -168509075 + AT_rich Low_complexity Low_complexity 1 44 0 427 222 44 0 chr4 15779760 15779850 -168508812 - MER58B DNA MER1_type -4 337 244 254 233 50 17 chr4 15779884 15779944 -168508718 + MER58B DNA MER1_type 244 305 -36 1194 211 64 0 chr4 15780491 15780766 -168507896 + MER58B DNA MER1_type 37 329 -12 2451 148 20 36 chr4 15781065 15781504 -168507158 + MSTB1 LTR MaLR 1 432 0 925 238 57 51 chr4 15781511 15781826 -168506836 - LTR16C LTR ERVL 0 491 175 1298 154 24 8 chr4 15781872 15782118 -168506544 + MER45R DNA AcHobo 712 961 -620 2143 124 32 42 chr4 15783128 15783507 -168505155 - THE1C LTR MaLR 0 375 1 665 203 89 19 chr4 15783604 15783762 -168504900 - MER63 DNA MER1_type 0 1060 892 2161 189 52 61 chr4 15783767 15784403 -168504259 + MER45R DNA AcHobo 952 1581 0 1656 308 84 37 chr4 15784459 15785245 -168503417 - ERVL LTR ERVL -2621 3143 2308 1303 203 125 28 chr4 15785245 15785604 -168503058 - MSTD LTR MaLR 0 396 3 1656 308 84 37 chr4 15785604 15785713 -168502949 - ERVL LTR ERVL -3456 2308 2206 648 279 32 16 chr4 15785766 15785956 -168502706 - ERVL LTR ERVL -3677 2087 1895 1032 316 76 62 chr4 15786275 15786582 -168502080 - ERVL LTR ERVL -3569 1427 1126 1684 173 7 23 chr4 15786582 15786888 -168501774 - AluJo SINE Alu -11 301 1 1032 316 76 62 chr4 15786888 15787628 -168501034 - ERVL LTR ERVL -3870 1126 365 1212 297 36 8 chr4 15787858 15788245 -168500417 - LTR16C LTR ERVL -92 399 2 192 77 0 0 chr4 15788298 15788324 -168500338 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2487 110 14 22 chr4 15788608 15788973 -168499689 - L1MA1 LINE L1 -6 6296 5935 229 122 0 0 chr4 15788973 15789014 -168499648 - AluSq SINE Alu -4 299 259 1650 118 0 0 chr4 15789014 15789235 -168499427 - AluSq SINE Alu -91 222 2 578 98 0 0 chr4 15789236 15789318 -168499344 - L1MA1 LINE L1 -354 5948 5867 1501 196 3 27 chr4 15789470 15789802 -168498860 + MER33 DNA MER1_type 1 324 0 246 311 44 44 chr4 15789860 15789950 -168498712 - L2 LINE L2 -47 3225 3136 228 167 62 73 chr4 15790426 15790522 -168498140 - L1MA5A LINE L1 -133 6164 6070 379 203 12 18 chr4 15790522 15790685 -168497977 + (TA)n Simple_repeat Simple_repeat 1 162 0 964 286 140 22 chr4 15790998 15791301 -168497361 - L2 LINE L2 0 3313 3047 2027 96 4 0 chr4 15791301 15791561 -168497101 - AluSp SINE Alu -14 299 39 964 286 140 22 chr4 15791561 15791770 -168496892 - L2 LINE L2 -266 3047 2741 247 242 67 0 chr4 15791851 15792016 -168496646 + (TAAA)n Simple_repeat Simple_repeat 4 179 0 308 158 40 89 chr4 15792627 15792728 -168495934 - LTR33 LTR ERVL -3 518 423 1223 223 99 60 chr4 15793712 15794038 -168494624 - L1MC4a LINE L1 -1736 6072 5721 2367 100 0 0 chr4 15794038 15794347 -168494315 - AluSg SINE Alu 0 310 2 1223 223 99 60 chr4 15794347 15794486 -168494176 - L1MC4a LINE L1 -2087 5721 5589 802 238 117 47 chr4 15795725 15796126 -168492536 + MER34C LTR ERV1 1 435 -160 349 240 100 28 chr4 15796114 15796292 -168492370 + MER34 LTR ERV1 405 542 0 * 2234 96 0 0 chr4 15796546 15796851 -168491811 - AluSp SINE Alu 0 307 3 669 169 7 0 chr4 15796921 15797057 -168491605 - L1MA7 LINE L1 0 6291 6155 1998 144 0 69 chr4 15797057 15797398 -168491264 - L1PA16 LINE L1 -4 6162 5839 1223 192 51 25 chr4 15797403 15797707 -168490955 - L1MA7 LINE L1 -73 6229 5903 262 339 27 9 chr4 15797892 15798004 -168490658 + MIR SINE MIR 11 124 -138 432 319 0 7 chr4 15798252 15798387 -168490275 + MIR SINE MIR 119 252 -10 342 275 12 31 chr4 15798387 15798547 -168490115 + CT-rich Low_complexity Low_complexity 2 158 0 2833 195 47 5 chr4 15798838 15799429 -168489233 - L1MB7 LINE L1 -9 6175 5560 287 161 218 23 chr4 15799429 15799516 -168489146 + L2 LINE L2 3210 3313 0 1545 170 35 28 chr4 15799590 15799902 -168488760 - AluJb SINE Alu 0 314 1 1371 111 0 5 chr4 15799942 15800160 -168488502 - AluSp SINE Alu 0 314 98 221 256 0 77 chr4 15800674 15800752 -168487910 + L2 LINE L2 3201 3272 0 2183 87 33 3 chr4 15800829 15801128 -168487534 + AluSg SINE Alu 1 308 -2 285 281 11 22 chr4 15801150 15801239 -168487423 + (CATA)n Simple_repeat Simple_repeat 1 88 0 30 69 0 0 chr4 15801317 15801375 -168487287 + AT_rich Low_complexity Low_complexity 1 58 0 2243 149 58 28 chr4 15801435 15801933 -168486729 - L1MA9 LINE L1 -231 6081 5692 24 0 0 0 chr4 15802115 15802139 -168486523 + AT_rich Low_complexity Low_complexity 1 24 0 225 222 67 59 chr4 15802284 15802419 -168486243 + L1ME4a LINE L1 5983 6118 -3 3170 167 56 12 chr4 15802566 15803140 -168485522 + L1MC1 LINE L1 5724 6322 -11 485 295 77 22 chr4 15803550 15803733 -168484929 + MLT1K LTR MaLR 28 220 -368 216 0 0 0 chr4 15803784 15803808 -168484854 + (TG)n Simple_repeat Simple_repeat 2 25 0 651 257 26 66 chr4 15803811 15804037 -168484625 + MIR SINE MIR 9 225 -37 1779 250 160 20 chr4 15804038 15804914 -168483748 + L2 LINE L2 2298 3310 -3 195 274 32 0 chr4 15804960 15805022 -168483640 - L2 LINE L2 -4 3268 3205 198 0 0 0 chr4 15805698 15805720 -168482942 + (A)n Simple_repeat Simple_repeat 1 22 0 2285 99 0 3 chr4 15806220 15806513 -168482149 - AluSc SINE Alu -17 292 1 996 135 0 0 chr4 15806698 15806831 -168481831 - AluSq/x SINE Alu -180 133 1 2825 22 0 9 chr4 15807391 15807706 -168480956 - AluYb8 SINE Alu -6 312 1 261 270 7 102 chr4 15808185 15808322 -168480340 - L2 LINE L2 -6 3307 3184 23 86 0 0 chr4 15808581 15808639 -168480023 + AT_rich Low_complexity Low_complexity 1 58 0 2173 121 7 0 chr4 15808752 15809050 -168479612 - AluSx SINE Alu -12 300 1 2179 93 18 0 chr4 15809334 15809637 -168479025 + AluSx SINE Alu 1 308 0 245 319 31 38 chr4 15809697 15809857 -168478805 - MIR SINE MIR -13 249 91 340 260 52 0 chr4 15809934 15810011 -168478651 + L2 LINE L2 3233 3313 0 286 309 81 0 chr4 15810094 15810230 -168478432 - MIR SINE MIR -33 229 83 446 285 145 21 chr4 15810533 15810726 -168477936 + L1MC4a LINE L1 5493 5709 -2099 354 300 42 32 chr4 15810729 15810919 -168477743 + L1MC4a LINE L1 5744 5935 -1873 225 0 0 0 chr4 15810919 15810944 -168477718 + (TC)n Simple_repeat Simple_repeat 2 26 0 293 250 196 25 chr4 15811603 15811807 -168476855 - L2 LINE L2 -199 3073 2835 664 297 66 40 chr4 15811954 15812334 -168476328 - L2 LINE L2 -625 2689 2300 320 374 0 0 chr4 15812339 15812478 -168476184 + L2 LINE L2 917 1055 -2259 1239 158 36 43 chr4 15812478 15812783 -168475879 + AluJb SINE Alu 49 312 0 302 264 255 35 chr4 15812789 15812842 -168475820 + L2 LINE L2 1053 1093 -2221 2322 153 5 13 chr4 15812842 15813235 -168475427 + MLT1B LTR MaLR 1 390 0 302 264 255 35 chr4 15813235 15813522 -168475140 + L2 LINE L2 1093 1468 -1846 1004 93 0 105 chr4 15813617 15813789 -168474873 + AluJb SINE Alu 66 219 -93 1759 283 135 40 chr4 15813804 15814807 -168473855 + L2 LINE L2 1626 2785 -528 6786 76 25 0 chr4 15814807 15816169 -168472493 + L1PA10 LINE L1 4784 6168 0 1759 283 135 40 chr4 15816169 15816442 -168472220 + L2 LINE L2 2785 3031 -282 829 231 108 0 chr4 15816597 15816800 -168471862 - MIR SINE MIR 0 262 38 210 298 53 90 chr4 15816807 15816995 -168471667 - L2 LINE L2 -228 3044 2864 263 234 0 47 chr4 15818286 15818350 -168470312 - L1ME2 LINE L1 -139 6025 5965 409 242 129 0 chr4 15818735 15818859 -168469803 - L1MC4a LINE L1 -1946 5862 5723 458 268 63 8 chr4 15818866 15818993 -168469669 - L2 LINE L2 0 3313 3180 503 266 133 67 chr4 15818996 15819417 -168469245 - L1MC4a LINE L1 -415 5706 5258 441 54 0 0 chr4 15819430 15819486 -168469176 + (CA)n Simple_repeat Simple_repeat 1 56 0 313 371 13 39 chr4 15819688 15819740 -168468922 - MLT1H1-int LTR MaLR -847 524 472 1843 123 54 0 chr4 15819740 15820008 -168468654 + AluSx SINE Alu 1 286 -26 207 0 0 0 chr4 15820008 15820031 -168468631 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 313 371 13 39 chr4 15820038 15820214 -168468448 - MLT1H1-int LTR MaLR -899 472 302 2032 152 47 32 chr4 15820286 15820693 -168467969 - MLT2D LTR ERVL 0 414 2 824 272 124 53 chr4 15820746 15821239 -168467423 - MLT1H1 LTR MaLR 0 555 28 318 219 149 18 chr4 15821385 15821499 -168467163 + L2 LINE L2 3185 3313 0 261 316 82 10 chr4 15822416 15822514 -168466148 + L2 LINE L2 3156 3260 -12 2293 96 0 3 chr4 15823689 15823982 -168464680 + AluSc SINE Alu 1 292 -17 4791 105 20 112 chr4 15824683 15825588 -168463074 - LTR12 LTR ERV1 0 826 5 1966 159 107 39 chr4 15825609 15826168 -168462494 - pTR5 LTR ERV1 -1099 1339 743 803 200 171 0 chr4 15826230 15826400 -168462262 - MER45C DNA AcHobo -5 948 750 2509 150 50 11 chr4 15826589 15827030 -168461632 - LTR22A LTR ERVK 0 458 1 301 292 71 0 chr4 15827104 15827217 -168461445 - MER117 DNA MER1_type -44 153 33 1088 193 131 103 chr4 15827631 15828067 -168460595 - LTR37B LTR ERV1 -11 457 10 759 243 22 0 chr4 15828074 15828259 -168460403 - L2 LINE L2 -4 3309 3121 305 207 30 40 chr4 15828282 15828433 -168460229 - LTR37B LTR ERV1 -81 387 187 2380 157 11 39 chr4 15828438 15828878 -168459784 + MSTC LTR MaLR 1 428 0 408 311 30 0 chr4 15828878 15829010 -168459652 - L2 LINE L2 -264 3049 2914 558 43 0 0 chr4 15829011 15829080 -168459582 + (TCTCCC)n Simple_repeat Simple_repeat 5 73 0 5387 68 29 53 chr4 15829086 15830052 -168458610 + SVA Other Other 50 866 -520 1542 73 11 25 chr4 15830080 15830355 -168458307 + SVA Other Other 596 866 -520 6252 74 15 63 chr4 15830374 15831376 -168457286 + SVA Other Other 433 1386 0 231 36 0 0 chr4 15831390 15831418 -168457244 + (GAAAA)n Simple_repeat Simple_repeat 4 31 0 943 244 71 76 chr4 15831455 15832032 -168456630 - L1MC5 LINE L1 -48 7913 7340 216 167 30 45 chr4 15832032 15832098 -168456564 + L2 LINE L2 1952 2016 -1298 279 193 0 0 chr4 15832104 15832161 -168456501 + L2 LINE L2 2218 2274 -1040 1041 274 50 6 chr4 15832566 15832909 -168455753 - L2 LINE L2 -614 2700 2343 1399 182 0 82 chr4 15832910 15833201 -168455461 + Tigger7 DNA MER2_type 1 267 -466 513 162 20 20 chr4 15833199 15833298 -168455364 + Tigger7 DNA MER2_type 2393 2491 0 * 399 206 0 21 chr4 15833302 15833399 -168455263 - L2 LINE L2 -1002 2312 2218 725 244 81 37 chr4 15833405 15833676 -168454986 - L2 LINE L2 -1298 2016 1734 238 167 12 60 chr4 15834408 15834492 -168454170 - L1ME4a LINE L1 -1 6120 6041 32 26 0 0 chr4 15835381 15835420 -168453242 + AT_rich Low_complexity Low_complexity 1 39 0 799 291 142 14 chr4 15835690 15836120 -168452542 - L1MC4a LINE L1 -1910 5898 5414 253 262 33 33 chr4 15836190 15836312 -168452350 - L1ME4a LINE L1 -298 5872 5751 1942 176 86 32 chr4 15836475 15836917 -168451745 - MLT1C LTR MaLR -1 466 1 300 240 13 0 chr4 15836922 15836997 -168451665 - MLT1L LTR MaLR 0 615 540 853 146 0 0 chr4 15837007 15837130 -168451532 - FLAM_C SINE Alu -20 123 1 295 247 140 11 chr4 15837135 15837228 -168451434 - MLT1L LTR MaLR -69 546 442 254 219 0 89 chr4 15837371 15837477 -168451185 - MLT1J LTR MaLR -332 179 108 852 300 115 15 chr4 15837589 15838347 -168450315 - L1ME4a LINE L1 -754 5392 4746 2247 219 68 28 chr4 15838364 15838656 -168450006 - L1ME1 LINE L1 -202 5964 5685 3955 119 28 2 chr4 15838656 15839221 -168449441 + LTR19B LTR ERV1 1 580 0 2247 219 68 28 chr4 15839221 15839573 -168449089 - L1ME1 LINE L1 -481 5685 5294 12193 158 40 31 chr4 15839574 15841422 -168447240 + L1MA5 LINE L1 2849 4723 -1553 1775 145 52 0 chr4 15841422 15841779 -168446883 - AluSx SINE Alu 0 371 1 12193 158 40 31 chr4 15841779 15842591 -168446071 + L1MA5 LINE L1 4723 5526 -750 3991 116 24 22 chr4 15842598 15843230 -168445432 - L1PA16 LINE L1 -9 6157 5525 4526 147 30 10 chr4 15843232 15843999 -168444663 + L1MA5 LINE L1 5517 6298 -2 400 223 37 79 chr4 15844006 15844221 -168444441 - L1ME1 LINE L1 -830 5316 5111 680 275 20 93 chr4 15844226 15844622 -168444040 + L2 LINE L2 2947 3313 0 212 321 156 0 chr4 15845377 15845486 -168443176 + MIR SINE MIR 117 242 -20 1871 213 62 38 chr4 15845946 15846476 -168442186 - MER90 LTR ERV1 0 614 72 272 311 146 9 chr4 15847876 15848095 -168440567 + MIR SINE MIR 13 261 -1 316 327 0 0 chr4 15848276 15848377 -168440285 + MIR3 SINE MIR 67 167 -41 358 286 60 54 chr4 15848379 15848547 -168440115 - MER5B DNA MER1_type -9 169 1 431 187 13 0 chr4 15849707 15849782 -168438880 - MER5A DNA MER1_type 0 189 114 525 209 27 9 chr4 15849787 15849897 -168438765 - MLT1C LTR MaLR -354 113 2 5891 211 27 25 chr4 15849900 15850573 -168438089 - L1M4 LINE L1 -713 5465 4795 1540 256 36 34 chr4 15850573 15851097 -168437565 - LTR45 LTR ERV1 0 525 1 5891 211 27 25 chr4 15851097 15851350 -168437312 - L1M4 LINE L1 -1383 4795 4544 2285 96 0 13 chr4 15851350 15851653 -168437009 + AluSg SINE Alu 1 299 -11 5891 211 27 25 chr4 15851653 15852365 -168436297 - L1M4 LINE L1 -1634 4544 3830 12605 97 11 14 chr4 15852365 15853729 -168434933 - L1PA8 LINE L1 -4 6168 4814 2400 103 0 0 chr4 15853729 15854039 -168434623 - AluSg SINE Alu 0 310 1 12605 97 11 14 chr4 15854039 15855303 -168433359 - L1PA8 LINE L1 -1358 4814 3548 25 51 0 0 chr4 15855390 15855429 -168433233 + AT_rich Low_complexity Low_complexity 1 39 0 204 206 0 0 chr4 15855914 15855948 -168432714 + (TAG)n Simple_repeat Simple_repeat 1 34 0 184 298 0 106 chr4 15856023 15856127 -168432535 - MIR SINE MIR -80 182 90 371 269 56 82 chr4 15856413 15856681 -168431981 - MIR SINE MIR 0 262 2 680 112 0 0 chr4 15856712 15856801 -168431861 + L1PA10 LINE L1 10 98 -6363 * 23083 147 28 45 chr4 15856797 15857938 -168430724 + L1PA10 LINE L1 308 1466 -5017 2537 65 21 0 chr4 15857938 15858276 -168430386 + L1PA7 LINE L1 5810 6154 0 23083 147 28 45 chr4 15858276 15863230 -168425432 + L1PA10 LINE L1 1466 6459 -24 30 0 0 0 chr4 15863250 15863280 -168425382 + AT_rich Low_complexity Low_complexity 1 30 0 346 221 76 87 chr4 15863551 15863616 -168425046 + MER112 DNA MER1_type 1 65 -195 180 0 0 0 chr4 15863616 15863636 -168425026 + (CA)n Simple_repeat Simple_repeat 2 21 0 346 221 76 87 chr4 15863636 15863742 -168424920 + MER112 DNA MER1_type 65 170 -90 2307 153 36 10 chr4 15864083 15864500 -168424162 - MSTB1 LTR MaLR -4 428 1 268 148 23 80 chr4 15864888 15864976 -168423686 + T-rich Low_complexity Low_complexity 1 83 0 503 318 140 42 chr4 15865320 15865394 -168423268 - L1MC/D LINE L1 -2050 5758 5693 351 0 0 0 chr4 15865394 15865433 -168423229 + (CA)n Simple_repeat Simple_repeat 1 39 0 503 318 140 42 chr4 15865433 15865558 -168423104 - L1MC/D LINE L1 -2115 5693 5582 816 134 0 63 chr4 15865558 15865700 -168422962 + FLAM_C SINE Alu 1 133 0 503 318 140 42 chr4 15865700 15865949 -168422713 - L1MC/D LINE L1 -2226 5582 5265 540 260 115 4 chr4 15865949 15866184 -168422478 - MIR SINE MIR 0 262 2 5056 150 36 15 chr4 15866836 15866953 -168421709 - L1MA7 LINE L1 0 6291 6178 2066 141 0 3 chr4 15866953 15867250 -168421412 - AluJb SINE Alu -16 296 1 5056 150 36 15 chr4 15867250 15868141 -168420521 - L1MA7 LINE L1 -113 6178 5262 6408 122 15 17 chr4 15868160 15868334 -168420328 - L1MA2 LINE L1 0 7723 7550 1420 86 68 32 chr4 15868334 15868555 -168420107 + MER30 DNA MER1_type 1 229 -1 6408 122 15 17 chr4 15868555 15869754 -168418908 - L1MA2 LINE L1 -173 7550 6357 * 14424 127 88 10 chr4 15869730 15872276 -168416386 - L1MA2 LINE L1 -3930 3635 891 646 278 35 26 chr4 15873556 15873786 -168414876 - MIR SINE MIR -2 260 29 2714 140 19 13 chr4 15873829 15874294 -168414368 - L1MA5A LINE L1 -2 6295 5828 2345 112 0 0 chr4 15874300 15874612 -168414050 - AluSx SINE Alu 0 312 1 976 119 8 0 chr4 15874612 15874746 -168413916 - AluSq/x SINE Alu -178 135 1 191 111 0 28 chr4 15874907 15874943 -168413719 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 1390 205 35 49 chr4 15875039 15875409 -168413253 - MLT1A1 LTR MaLR 0 365 1 440 294 24 8 chr4 15875482 15875608 -168413054 - MIR SINE MIR -115 147 20 378 281 9 9 chr4 15875772 15875886 -168412776 + MIR SINE MIR 82 195 -67 23 0 0 0 chr4 15876277 15876300 -168412362 + AT_rich Low_complexity Low_complexity 1 23 0 318 301 157 6 chr4 15877668 15877834 -168410828 + MIR SINE MIR 72 262 0 383 298 120 0 chr4 15878253 15878346 -168410316 - MER5A DNA MER1_type 0 189 109 2406 97 0 0 chr4 15878346 15878657 -168410005 - AluY SINE Alu 0 311 1 383 298 120 0 chr4 15878657 15878721 -168409941 - MER5A DNA MER1_type -80 109 13 28 48 0 0 chr4 15879960 15880002 -168408660 + AT_rich Low_complexity Low_complexity 1 42 0 41142 29 22 1 chr4 15880481 15886507 -168402155 + L1HS LINE L1 1 6155 0 252 0 0 0 chr4 15886530 15886558 -168402104 + (A)n Simple_repeat Simple_repeat 1 28 0 467 292 37 51 chr4 15888078 15888157 -168400505 - MIR SINE MIR -64 144 111 487 127 13 0 chr4 15888157 15888236 -168400426 - MADE1 DNA Mariner 0 80 1 467 292 37 51 chr4 15888236 15888345 -168400317 - MIR SINE MIR -97 111 2 486 243 89 57 chr4 15888541 15888891 -168399771 - L1M4 LINE L1 -2870 3276 2916 1675 173 36 10 chr4 15888959 15889260 -168399402 + AluJb SINE Alu 1 309 -3 194 371 0 0 chr4 15889385 15889447 -168399215 + MIR SINE MIR 85 146 -62 317 282 8 26 chr4 15890551 15890668 -168397994 + (CATA)n Simple_repeat Simple_repeat 2 116 0 2005 145 0 35 chr4 15890672 15891016 -168397646 - MER7A DNA MER2_type -16 330 1 1752 62 9 4 chr4 15891737 15891962 -168396700 - AluY SINE Alu -3 308 83 2287 92 9 0 chr4 15892594 15892911 -168395751 - L1PA13 LINE L1 -19 6144 5825 1739 167 0 11 chr4 15892972 15893242 -168395420 + AluJo SINE Alu 1 267 -45 202 28 28 28 chr4 15893260 15893296 -168395366 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1954 163 54 32 chr4 15893412 15893950 -168394712 - MLT2A2 LTR ERVL 0 554 1 472 316 0 0 chr4 15894283 15894419 -168394243 + MIR SINE MIR 119 254 -8 193 0 61 30 chr4 15894422 15894455 -168394207 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 2412 82 0 0 chr4 15895354 15895657 -168393005 - AluSc SINE Alu -6 303 1 2955 61 35 5 chr4 15896160 15896301 -168392361 - L1PA6 LINE L1 0 6154 6019 180 0 0 0 chr4 15896301 15896321 -168392341 + (TCCC)n Simple_repeat Simple_repeat 1 20 0 2955 61 35 5 chr4 15896321 15896575 -168392087 - L1PA6 LINE L1 -135 6019 5747 247 278 144 0 chr4 15896727 15896824 -168391838 + L2 LINE L2 3191 3301 -12 5950 133 34 15 chr4 15897477 15897648 -168391014 + L1MA4A LINE L1 4603 4769 -1534 2103 124 0 0 chr4 15897648 15897939 -168390723 + AluSc SINE Alu 13 303 -6 5950 133 34 15 chr4 15897939 15899126 -168389536 + L1MA4A LINE L1 4769 6012 -291 405 0 0 0 chr4 15899126 15899171 -168389491 + (TG)n Simple_repeat Simple_repeat 1 45 0 5950 133 34 15 chr4 15899171 15899461 -168389201 + L1MA4A LINE L1 6012 6295 -8 424 213 20 87 chr4 15899522 15899672 -168388990 + MER104 DNA Tc2 38 177 -3 348 265 123 18 chr4 15899711 15899881 -168388781 - L1MC4a LINE L1 -1898 5910 5723 500 191 55 0 chr4 15899890 15900000 -168388662 + L1MC1 LINE L1 6217 6332 -1 403 226 7 82 chr4 15900041 15900152 -168388510 - MLT1H LTR MaLR -405 144 45 2716 95 14 0 chr4 15900152 15900522 -168388140 + THE1C LTR MaLR 1 375 0 403 226 7 82 chr4 15900522 15900556 -168388106 - MLT1H LTR MaLR -504 45 10 250 409 7 14 chr4 15900559 15900701 -168387961 - L2 LINE L2 -565 2749 2609 321 283 101 31 chr4 15901381 15901540 -168387122 + MIR SINE MIR 2 171 -91 353 268 176 20 chr4 15901647 15901800 -168386862 + MIR SINE MIR 22 198 -64 617 321 67 57 chr4 15901805 15902281 -168386381 - MLT1J LTR MaLR -15 496 16 2445 72 19 0 chr4 15902910 15903217 -168385445 + AluSp SINE Alu 1 313 0 2202 113 10 0 chr4 15904509 15904809 -168383853 + AluSq SINE Alu 1 303 -10 424 216 18 45 chr4 15905017 15905128 -168383534 - MER81 DNA DNA -5 109 2 297 328 89 6 chr4 15905142 15905306 -168383356 + MIR3 SINE MIR 70 257 -5 457 347 26 15 chr4 15906237 15906477 -168382185 + MIR SINE MIR 17 262 0 36 0 0 0 chr4 15906602 15906638 -168382024 + AT_rich Low_complexity Low_complexity 1 36 0 519 65 77 24 chr4 15906638 15906806 -168381856 + (TTATA)n Simple_repeat Simple_repeat 4 180 0 * 676 57 86 0 chr4 15906778 15907058 -168381604 + (TA)n Simple_repeat Simple_repeat 1 304 0 504 128 26 0 chr4 15907074 15907152 -168381510 + AluSc SINE Alu 214 293 -16 939 194 23 60 chr4 15907152 15907368 -168381294 - LTR8A LTR ERV1 -243 484 277 1200 140 0 0 chr4 15907482 15907660 -168381002 + MER41C LTR ERV1 377 554 0 3081 145 108 13 chr4 15909024 15909568 -168379094 + LTR9 LTR ERV1 1 596 -16 256 176 14 27 chr4 15909685 15909759 -168378903 + CT-rich Low_complexity Low_complexity 1 73 0 1127 277 135 60 chr4 15909861 15910077 -168378585 + HAL1 LINE L1 35 233 -2274 2206 134 71 3 chr4 15910077 15910442 -168378220 + MLT1B LTR MaLR 1 390 0 1127 277 135 60 chr4 15910442 15910973 -168377689 + HAL1 LINE L1 233 838 -1669 649 281 70 40 chr4 15911059 15911358 -168377304 + MLT1I LTR MaLR 100 407 -2 1119 226 97 79 chr4 15911361 15911682 -168376980 + HAL1 LINE L1 836 1150 -1357 2720 35 3 0 chr4 15911682 15911992 -168376670 + AluY SINE Alu 1 311 0 1119 226 97 79 chr4 15911992 15912319 -168376343 + HAL1 LINE L1 1150 1496 -1011 1736 193 13 0 chr4 15912319 15912625 -168376037 + AluSx SINE Alu 1 310 -2 2469 108 68 22 chr4 15912997 15913406 -168375256 + MSTA LTR MaLR 1 428 0 227 352 0 0 chr4 15913563 15913654 -168375008 - MIR3 SINE MIR -36 172 82 741 169 0 0 chr4 15913963 15914081 -168374581 + FLAM_C SINE Alu 1 118 -15 2119 145 0 0 chr4 15914256 15914559 -168374103 - AluSx SINE Alu -9 303 1 639 178 40 7 chr4 15915108 15915260 -168373402 - LTR33 LTR ERVL -20 501 345 287 298 67 10 chr4 15915466 15915570 -168373092 - LTR33A LTR ERVL -353 170 61 1241 228 25 3 chr4 15915786 15916146 -168372516 + L1 LINE L1 3028 3395 -2751 205 364 45 0 chr4 15916148 15916258 -168372404 + MIR3 SINE MIR 77 191 -17 556 238 22 40 chr4 15916320 15916472 -168372190 - MLT1H1 LTR MaLR 0 555 401 1336 151 11 1 chr4 15916863 15917235 -168371427 + MSTB LTR MaLR 1 426 0 3610 204 24 62 chr4 15917470 15918478 -168370184 + LTR5 LTR ERVK 1 969 0 227 204 93 0 chr4 15918591 15918687 -168369975 - MIR3 SINE MIR -7 201 94 238 255 75 11 chr4 15919235 15919329 -168369333 - MIR SINE MIR -57 205 106 1485 260 106 48 chr4 15919337 15919998 -168368664 + L2 LINE L2 1466 2178 -1136 2269 123 0 0 chr4 15919998 15920298 -168368364 - AluSx SINE Alu -12 300 1 1485 260 106 48 chr4 15920298 15920393 -168368269 + L2 LINE L2 2178 2266 -1048 604 271 61 33 chr4 15920505 15920719 -168367943 - MIR SINE MIR -24 238 19 1843 212 44 24 chr4 15921382 15921877 -168366785 + MLT1D LTR MaLR 1 505 0 3130 208 44 17 chr4 15922496 15923199 -168365463 - MER72 LTR ERV1 0 722 1 351 335 57 31 chr4 15923714 15923908 -168364754 - L2 LINE L2 -55 3217 3019 414 0 0 0 chr4 15923969 15924015 -168364647 + (TG)n Simple_repeat Simple_repeat 1 46 0 264 77 0 0 chr4 15924015 15924054 -168364608 + (GA)n Simple_repeat Simple_repeat 2 40 0 327 141 87 54 chr4 15924065 15924157 -168364505 - MER113 DNA MER1_type? -307 214 120 1065 283 104 46 chr4 15924183 15924770 -168363892 - L1MC4a LINE L1 -1645 6163 5543 635 320 9 9 chr4 15925277 15925499 -168363163 - MIR SINE MIR 0 262 41 235 360 0 0 chr4 15925546 15925635 -168363027 - MIR SINE MIR -62 146 58 2023 117 24 14 chr4 15925833 15926124 -168362538 + AluSp SINE Alu 3 296 -17 536 316 52 5 chr4 15926395 15926607 -168362055 + MIR SINE MIR 8 229 -33 2409 60 0 0 chr4 15926815 15927145 -168361517 - AluY SINE Alu 0 330 1 2666 129 19 14 chr4 15927312 15927738 -168360924 + MSTA LTR MaLR 1 428 0 33 43 0 0 chr4 15927833 15927880 -168360782 + AT_rich Low_complexity Low_complexity 1 47 0 283 241 25 25 chr4 15928372 15928451 -168360211 + MLT1L LTR MaLR 1 79 -536 2392 86 7 0 chr4 15928492 15928794 -168359868 + AluSp SINE Alu 1 304 -9 1029 171 48 187 chr4 15929051 15929216 -168359446 - MSTD LTR MaLR -4 392 206 4183 104 32 3 chr4 15929216 15929801 -168358861 + LTR43 LTR ERV1 1 602 0 1029 171 48 187 chr4 15929801 15930090 -168358572 - MSTD LTR MaLR -190 206 1 347 287 144 29 chr4 15930090 15930253 -168358409 + MLT1J LTR MaLR 324 506 -5 255 272 0 19 chr4 15931226 15931329 -168357333 + L1MC4 LINE L1 6614 6714 -1328 250 278 199 28 chr4 15931351 15931527 -168357135 + MLT1L LTR MaLR 209 414 -201 703 263 5 56 chr4 15932248 15932461 -168356201 + MLT1A2 LTR MaLR 1 202 -172 621 192 70 13 chr4 15932472 15932628 -168356034 - L1ME3A LINE L1 -83 6087 5923 1879 248 39 4 chr4 15932735 15933219 -168355443 - L1ME3A LINE L1 -243 5927 5427 21 0 0 0 chr4 15934457 15934478 -168354184 + AT_rich Low_complexity Low_complexity 1 21 0 224 333 36 9 chr4 15934554 15934665 -168353997 + L2 LINE L2 3154 3267 -5 357 24 0 0 chr4 15934877 15934919 -168353743 + (TC)n Simple_repeat Simple_repeat 2 43 0 248 130 22 0 chr4 15935151 15935197 -168353465 + T-rich Low_complexity Low_complexity 4 50 0 195 42 0 0 chr4 15935216 15935240 -168353422 + (TTTC)n Simple_repeat Simple_repeat 3 26 0 343 191 0 0 chr4 15935240 15935308 -168353354 - MER113 DNA MER1_type? -220 301 234 24 67 0 0 chr4 15935359 15935404 -168353258 + AT_rich Low_complexity Low_complexity 1 45 0 1248 150 5 5 chr4 15935425 15935618 -168353044 + AluJo SINE Alu 1 193 -119 219 69 0 0 chr4 15935721 15935750 -168352912 + (A)n Simple_repeat Simple_repeat 1 29 0 884 64 0 0 chr4 15935827 15935936 -168352726 - MER57B LTR ERV1 -4 430 322 263 288 24 64 chr4 15936109 15936234 -168352428 + MIR SINE MIR 88 207 -55 192 346 26 0 chr4 15936282 15936360 -168352302 + L2 LINE L2 2760 2839 -475 2158 212 78 98 chr4 15936379 15937114 -168351548 - MER21B LTR ERV1 -104 759 40 670 296 144 15 chr4 15937168 15937577 -168351085 + L2 LINE L2 2851 3312 -1 2441 132 50 65 chr4 15937924 15938224 -168350438 - LTR45B LTR ERV1 0 489 197 1596 185 3 14 chr4 15938224 15938511 -168350151 - AluJo SINE Alu -20 292 9 2441 132 50 65 chr4 15938511 15938689 -168349973 - LTR45B LTR ERV1 -292 197 18 676 244 78 79 chr4 15938900 15939375 -168349287 - L1MC4 LINE L1 -29 8013 7463 1925 177 0 3 chr4 15939470 15939781 -168348881 - AluJb SINE Alu -2 310 1 421 203 0 0 chr4 15939879 15939958 -168348704 - MLT1D LTR MaLR 0 505 427 229 191 0 0 chr4 15939967 15940009 -168348653 - LTR45B LTR ERV1 -270 219 178 385 192 17 0 chr4 15940013 15940133 -168348529 + CT-rich Low_complexity Low_complexity 3 124 0 727 207 0 28 chr4 15940135 15940280 -168348382 - AluJb SINE Alu -13 299 159 1358 226 65 42 chr4 15940282 15940667 -168347995 - MLT1D LTR MaLR -105 400 7 938 290 90 36 chr4 15941399 15941865 -168346797 - L1MC4a LINE L1 -130 5991 5501 2087 127 10 20 chr4 15941916 15942216 -168346446 - AluSx SINE Alu -15 297 1 312 291 67 22 chr4 15942273 15942407 -168346255 + MIR3 SINE MIR 20 159 -49 2387 138 6 3 chr4 15942875 15943238 -168345424 + THE1B LTR MaLR 1 364 0 1372 278 99 35 chr4 15943292 15944081 -168344581 + L2 LINE L2 2348 3192 -121 321 279 174 6 chr4 15944353 15944514 -168344148 + MIR SINE MIR 59 246 -16 22 0 0 0 chr4 15944790 15944812 -168343850 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 15945003 15945028 -168343634 + GC_rich Low_complexity Low_complexity 1 25 0 238 312 38 32 chr4 15945268 15945425 -168343237 - MIR SINE MIR -12 250 93 1785 178 3 13 chr4 15945692 15946007 -168342655 - AluJo SINE Alu 0 312 1 2176 185 72 6 chr4 15946207 15946682 -168341980 - Charlie1b DNA MER1_type 0 523 18 2087 204 21 41 chr4 15946988 15947503 -168341159 + MLT1D LTR MaLR 1 505 0 2885 116 12 0 chr4 15947798 15948202 -168340460 - MSTA LTR MaLR 0 428 20 23 0 0 0 chr4 15948543 15948566 -168340096 + AT_rich Low_complexity Low_complexity 1 23 0 1258 221 12 4 chr4 15948566 15948820 -168339842 - AluJo SINE Alu -22 290 35 3928 160 66 6 chr4 15948976 15949657 -168339005 + MER72 LTR ERV1 1 722 0 204 329 12 12 chr4 15949933 15950015 -168338647 - L2 LINE L2 -5 3267 3186 193 272 196 0 chr4 15950078 15950170 -168338492 - L2 LINE L2 -8 3264 3155 669 317 87 24 chr4 15950322 15950748 -168337914 + L1MC4a LINE L1 5450 5902 -1906 985 209 90 0 chr4 15950961 15951195 -168337467 + MLT1B LTR MaLR 11 265 -125 527 220 8 42 chr4 15951712 15951830 -168336832 - MER81 DNA DNA 0 114 1 213 350 8 17 chr4 15951997 15952114 -168336548 - MIR SINE MIR -137 125 10 234 330 34 0 chr4 15952182 15952270 -168336392 - MIR SINE MIR -80 128 38 260 313 61 0 chr4 15952858 15952957 -168335705 + MIR SINE MIR 48 152 -110 1171 157 22 110 chr4 15953610 15953928 -168334734 - MER74A LTR ERVL 0 558 269 892 233 5 32 chr4 15954319 15954538 -168334124 - MER51C LTR ERV1 0 640 428 303 182 104 13 chr4 15954567 15954644 -168334018 - MER51C LTR ERV1 -211 429 346 486 260 70 45 chr4 15955085 15955120 -168333542 + MLT1I LTR MaLR 28 61 -348 4072 74 0 4 chr4 15955120 15955633 -168333029 - MER9 LTR ERVK 0 511 1 486 260 70 45 chr4 15955633 15955797 -168332865 + MLT1I LTR MaLR 61 232 -177 4435 139 23 20 chr4 15955921 15956663 -168331999 + Tigger2 DNA MER2_type 1 744 -1974 1304 127 101 13 chr4 15956716 15956953 -168331709 + Tigger2 DNA MER2_type 2461 2718 0 275 262 55 0 chr4 15956982 15957097 -168331565 - MIR SINE MIR -63 145 32 204 373 0 0 chr4 15957221 15957296 -168331366 + MIR SINE MIR 117 191 -71 277 321 84 70 chr4 15957364 15957663 -168330999 + L2 LINE L2 2877 3179 -93 1189 133 49 8 chr4 15958119 15958422 -168330240 - MER83B LTR ERV1 0 378 3 254 275 0 38 chr4 15958640 15958720 -168329942 + L2 LINE L2 3190 3266 -6 443 264 101 8 chr4 15958729 15958858 -168329804 + MER50 LTR ERV1 10 150 -584 919 103 0 0 chr4 15958922 15959058 -168329604 + AluSg/x SINE Alu 176 311 -1 1703 198 121 18 chr4 15959066 15959505 -168329157 + MER50 LTR ERV1 251 734 0 1800 147 3 27 chr4 15960848 15961202 -168327460 - MER4A LTR ERV1 0 664 261 585 134 21 10 chr4 15961202 15961299 -168327363 - MER4A LTR ERV1 -566 98 1 355 328 77 84 chr4 15961317 15961563 -168327099 + L2 LINE L2 1939 2185 -1129 2160 110 0 0 chr4 15961563 15961863 -168326799 - AluSq SINE Alu -13 300 1 355 328 77 84 chr4 15961863 15962059 -168326603 + L2 LINE L2 2185 2381 -933 1585 187 0 13 chr4 15962059 15962243 -168326419 - AluJb SINE Alu -1 311 126 225 0 0 0 chr4 15962243 15962268 -168326394 + (TG)n Simple_repeat Simple_repeat 2 26 0 279 0 0 0 chr4 15962276 15962307 -168326355 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1585 187 0 13 chr4 15962307 15962428 -168326234 - AluJb SINE Alu -193 119 1 355 328 77 84 chr4 15962428 15962802 -168325860 + L2 LINE L2 2381 2750 -564 1040 292 62 40 chr4 15962845 15963345 -168325317 + LTR33 LTR ERVL 1 511 -10 235 298 121 42 chr4 15963355 15963570 -168325092 + L2 LINE L2 2842 3073 -199 303 357 79 0 chr4 15963680 15963806 -168324856 + MIR SINE MIR 116 251 -11 307 297 61 135 chr4 15963995 15964119 -168324543 - L1MC/D LINE L1 -2095 5713 5612 1792 145 0 23 chr4 15964119 15964422 -168324240 - AluJo SINE Alu -16 296 1 307 297 61 135 chr4 15964422 15964526 -168324136 - L1MC/D LINE L1 -2196 5612 5502 481 240 168 89 chr4 15964711 15965066 -168323596 + LTR33A LTR ERVL 64 456 -67 1952 129 10 6 chr4 15965066 15965377 -168323285 - AluSq SINE Alu -1 312 1 481 240 168 89 chr4 15965377 15965425 -168323237 + LTR33A LTR ERVL 456 499 -24 466 281 16 8 chr4 15965462 15965590 -168323072 + L1MC/D LINE L1 5490 5618 -503 809 229 22 27 chr4 15965591 15965814 -168322848 + L1MC5 LINE L1 7704 7925 -36 1942 127 0 13 chr4 15965823 15966123 -168322539 + AluJo SINE Alu 1 296 -16 234 281 34 34 chr4 15966212 15966301 -168322361 + L1MC/D LINE L1 5703 5791 -2017 189 107 0 0 chr4 15966585 15966613 -168322049 + (TTCC)n Simple_repeat Simple_repeat 2 29 0 2096 109 0 0 chr4 15966621 15966915 -168321747 - AluY SINE Alu -17 294 1 2128 110 0 10 chr4 15967377 15967677 -168320985 - AluSx SINE Alu -15 297 1 304 318 32 37 chr4 15967755 15967982 -168320680 - MIR SINE MIR 0 262 36 418 228 228 65 chr4 15968021 15968197 -168320465 + MIR SINE MIR 8 227 -35 760 211 35 0 chr4 15968197 15968368 -168320294 - MER5B DNA MER1_type -1 177 1 418 228 228 65 chr4 15968368 15968406 -168320256 + MIR SINE MIR 227 257 -5 822 249 24 0 chr4 15969224 15969437 -168319225 + MER20 DNA MER1_type 1 218 -1 303 299 93 0 chr4 15969453 15969550 -168319112 - L2 LINE L2 -20 3252 3147 376 343 10 0 chr4 15970172 15970271 -168318391 - L2 LINE L2 -1 3271 3172 2445 127 11 8 chr4 15970286 15970649 -168318013 - THE1B LTR MaLR 0 364 1 2270 105 0 0 chr4 15971287 15971600 -168317062 + AluSq SINE Alu 1 313 0 509 283 95 3 chr4 15971871 15972092 -168316570 + MIR SINE MIR 18 256 -6 189 348 32 39 chr4 15972221 15972376 -168316286 - MIR SINE MIR -16 246 93 307 280 76 45 chr4 15972846 15972978 -168315684 + L2 LINE L2 3178 3313 0 677 306 122 28 chr4 15972989 15973342 -168315320 + L2 LINE L2 2928 3313 0 279 306 60 30 chr4 15974153 15974287 -168314375 + MIR SINE MIR 29 166 -96 365 309 0 0 chr4 15975826 15975920 -168312742 - L2 LINE L2 0 3272 3179 258 342 43 34 chr4 15976588 15976705 -168311957 - MIR3 SINE MIR -85 123 6 259 364 21 21 chr4 15977632 15977775 -168310887 - MIR3 SINE MIR -60 148 6 181 111 0 0 chr4 15977773 15977800 -168310862 + L2 LINE L2 3285 3311 -2 * 193 333 81 16 chr4 15978057 15978180 -168310482 + MIR SINE MIR 39 169 -93 488 235 111 92 chr4 15978489 15978706 -168309956 - Charlie8 DNA MER1_type -2152 265 45 483 186 6 22 chr4 15979328 15979511 -168309151 + (CA)n Simple_repeat Simple_repeat 1 180 0 255 114 0 0 chr4 15979532 15979576 -168309086 + (CA)n Simple_repeat Simple_repeat 2 45 0 242 347 12 24 chr4 15979581 15979748 -168308914 + L2 LINE L2 2872 3036 -236 778 175 88 16 chr4 15980290 15980484 -168308178 - L1MC3 LINE L1 -15 7770 7563 207 0 0 0 chr4 15980489 15980512 -168308150 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2660 185 22 72 chr4 15980513 15981259 -168307403 - L1MC1 LINE L1 -7 6326 5656 894 200 43 9 chr4 15981258 15981468 -168307194 - L1MC3 LINE L1 -212 7573 7357 * 1760 80 34 42 chr4 15981987 15982251 -168306411 + AluY SINE Alu 34 295 -16 3070 128 11 68 chr4 15982454 15982683 -168305979 - L1PA16 LINE L1 -7 6159 5919 2042 130 0 0 chr4 15982683 15982984 -168305678 - AluSg SINE Alu -9 301 1 3070 128 11 68 chr4 15982984 15983317 -168305345 - L1PA16 LINE L1 -247 5919 5629 299 188 0 16 chr4 15983399 15983463 -168305199 - MER116 DNA Mariner 0 80 18 215 303 0 11 chr4 15983714 15983803 -168304859 + (CA)n Simple_repeat Simple_repeat 1 88 0 328 266 86 55 chr4 15984385 15984513 -168304149 - L2 LINE L2 -1 3271 3140 542 202 0 0 chr4 15984966 15985060 -168303602 - HERVL74 LTR ERVL -1612 4073 3980 1189 217 114 69 chr4 15985065 15985485 -168303177 - MSTB2 LTR MaLR -2 455 17 253 83 0 0 chr4 15985487 15985523 -168303139 - HERVL74 LTR ERVL -1710 3975 3940 519 216 9 0 chr4 15985571 15985682 -168302980 - HERVL74 LTR ERVL -2086 3599 3488 * 662 220 8 0 chr4 15985673 15985805 -168302857 - HERVL74 LTR ERVL -2345 3340 3208 * 813 272 51 0 chr4 15985802 15985997 -168302665 - HERVL74 LTR ERVL -3008 2677 2473 1303 224 101 7 chr4 15986919 15987227 -168301435 - MER2 DNA MER2_type -8 337 1 1314 251 85 27 chr4 15987229 15987675 -168300987 - MER74B LTR ERVL -93 529 58 352 339 128 11 chr4 15988281 15988461 -168300201 - MIR SINE MIR -56 206 6 2097 108 10 0 chr4 15988476 15988781 -168299881 + AluSq SINE Alu 1 308 -5 31 44 0 0 chr4 15988887 15988932 -168299730 + AT_rich Low_complexity Low_complexity 1 45 0 1405 178 37 11 chr4 15988937 15989229 -168299433 + AluSx SINE Alu 6 304 0 1500 198 25 7 chr4 15989229 15989512 -168299150 - AluJo SINE Alu -23 289 2 216 97 0 0 chr4 15990332 15990363 -168298299 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 751 175 0 0 chr4 15990363 15990483 -168298179 - FLAM_C SINE Alu -22 121 2 182 236 69 56 chr4 15990483 15990555 -168298107 - MIR SINE MIR -70 192 120 1350 110 0 5 chr4 15991218 15991418 -168297244 - L1PB1 LINE L1 0 6151 5953 2673 102 3 0 chr4 15991420 15991774 -168296888 - THE1A LTR MaLR 0 355 1 11712 95 12 12 chr4 15991774 15992533 -168296129 - THE1A-int LTR MaLR 0 1580 822 3001 126 11 17 chr4 15992533 15992994 -168295668 + LTR22A LTR ERVK 1 458 0 11712 95 12 12 chr4 15992994 15993814 -168294848 - THE1A-int LTR MaLR -757 823 1 2619 101 3 8 chr4 15993814 15994171 -168294491 - THE1A LTR MaLR 0 355 1 372 311 123 46 chr4 15994701 15995026 -168293636 + HERVL40 LTR ERVL 3021 3370 -2160 305 256 48 0 chr4 15996199 15996324 -168292338 - L1M4 LINE L1 -1128 5018 4888 1693 182 34 6 chr4 15996353 15996710 -168291952 - L1MB3 LINE L1 -15 6168 5802 463 224 41 71 chr4 15996758 15996854 -168291808 - MER5A DNA MER1_type -22 167 77 1936 131 0 3 chr4 15996854 15997145 -168291517 - AluSx SINE Alu -22 290 1 463 224 41 71 chr4 15997145 15997218 -168291444 - MER5A DNA MER1_type -112 77 3 252 252 153 38 chr4 15997357 15997488 -168291174 + MIR SINE MIR 47 192 -70 273 270 66 36 chr4 15997646 15997783 -168290879 + L2 LINE L2 3172 3312 -1 253 279 209 0 chr4 15997803 15997889 -168290773 - MER5B DNA MER1_type -1 177 74 694 246 11 17 chr4 15997889 15998068 -168290594 + MER5B DNA MER1_type 1 178 0 2297 75 3 0 chr4 15998113 15998405 -168290257 + AluSx SINE Alu 1 293 -19 1759 220 64 9 chr4 15998631 15999067 -168289595 + MLT1C LTR MaLR 6 465 -2 204 40 0 0 chr4 15999506 15999531 -168289131 + (A)n Simple_repeat Simple_repeat 1 25 0 1990 163 41 46 chr4 15999558 15999950 -168288712 + MLT1B LTR MaLR 1 390 0 333 203 68 68 chr4 16000033 16000196 -168288466 + HAL1b LINE L1 1186 1348 0 485 229 40 51 chr4 16000974 16001149 -168287513 - MER5B DNA MER1_type -4 174 2 22 35 0 0 chr4 16002889 16002918 -168285744 + AT_rich Low_complexity Low_complexity 1 29 0 246 32 0 0 chr4 16003370 16003401 -168285261 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1211 227 0 25 chr4 16003402 16003684 -168284978 - AluJo SINE Alu -37 275 1 1898 134 17 0 chr4 16003693 16003984 -168284678 - AluSx SINE Alu -16 296 1 297 324 205 0 chr4 16004402 16004617 -168284045 + L2 LINE L2 2871 3149 -164 2159 124 0 0 chr4 16004617 16004916 -168283746 - AluSx SINE Alu -13 299 1 297 324 205 0 chr4 16004916 16004959 -168283703 + L2 LINE L2 3149 3182 -131 513 237 35 0 chr4 16005227 16005341 -168283321 - MLT1J LTR MaLR -330 181 64 767 211 74 26 chr4 16005591 16005781 -168282881 + MER58A DNA MER1_type 26 224 0 311 302 60 7 chr4 16006075 16006224 -168282438 - L2 LINE L2 -1408 1906 1750 2290 85 0 0 chr4 16006281 16006576 -168282086 - AluSc SINE Alu -14 295 1 21 0 0 0 chr4 16006582 16006603 -168282059 + AT_rich Low_complexity Low_complexity 1 21 0 182 54 0 54 chr4 16008460 16008497 -168280165 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2040 103 40 4 chr4 16008497 16008769 -168279893 - AluSx SINE Alu -1 318 1 207 0 0 0 chr4 16008829 16008852 -168279810 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 808 194 0 71 chr4 16008852 16009022 -168279640 - FAM SINE Alu -17 158 1 2170 93 16 38 chr4 16009047 16009360 -168279302 - AluSx SINE Alu -1 311 6 33 66 0 0 chr4 16009365 16009426 -168279236 + AT_rich Low_complexity Low_complexity 1 61 0 241 274 0 0 chr4 16009441 16009503 -168279159 + (TA)n Simple_repeat Simple_repeat 1 62 0 791 194 85 18 chr4 16009533 16009792 -168278870 + MER2 DNA MER2_type 1 345 0 1479 208 98 16 chr4 16011139 16011505 -168277157 - MSTD LTR MaLR 0 396 1 294 290 93 55 chr4 16011657 16011840 -168276822 - MER117 DNA MER1_type -1 196 7 1738 154 52 4 chr4 16012071 16012343 -168276319 + AluSx SINE Alu 1 285 -27 390 250 100 7 chr4 16012414 16012554 -168276108 + Charlie8 DNA MER1_type 37 189 -2228 273 75 0 0 chr4 16012961 16013001 -168275661 + (CA)n Simple_repeat Simple_repeat 2 41 0 * 303 28 0 0 chr4 16013000 16013036 -168275626 + (TC)n Simple_repeat Simple_repeat 2 37 0 845 143 0 0 chr4 16013529 16013655 -168275007 - FLAM_C SINE Alu -9 134 9 273 240 69 115 chr4 16014054 16014114 -168274548 - MIR SINE MIR -49 213 152 2348 91 0 3 chr4 16014114 16014411 -168274251 - AluSg SINE Alu -14 296 1 273 240 69 115 chr4 16014411 16014542 -168274120 - MIR SINE MIR -110 152 33 249 303 67 0 chr4 16015687 16015776 -168272886 + LTR16A LTR ERVL 10 104 -346 2257 108 0 0 chr4 16016493 16016790 -168271872 - AluY SINE Alu -14 297 1 1294 225 117 9 chr4 16016824 16017149 -168271513 + MLT1A1 LTR MaLR 3 362 -3 579 66 0 0 chr4 16017870 16017946 -168270716 + (GGAA)n Simple_repeat Simple_repeat 1 76 0 223 159 0 0 chr4 16018569 16018613 -168270049 - L2 LINE L2 -1 3312 3269 26 0 0 0 chr4 16018819 16018845 -168269817 + AT_rich Low_complexity Low_complexity 1 26 0 216 0 0 0 chr4 16019499 16019523 -168269139 + (T)n Simple_repeat Simple_repeat 1 24 0 320 269 31 39 chr4 16019577 16019707 -168268955 - MIR SINE MIR -31 231 103 2336 78 0 0 chr4 16019839 16020153 -168268509 - AluY SINE Alu 0 314 1 2346 92 0 10 chr4 16020181 16020485 -168268177 + AluSg SINE Alu 1 301 -9 469 247 88 53 chr4 16020655 16020882 -168267780 + Charlie8 DNA MER1_type 31 265 -2152 273 299 106 53 chr4 16021884 16022148 -168266514 - L2 LINE L2 -33 3280 3003 207 284 68 0 chr4 16022154 16022242 -168266420 - MIR SINE MIR 0 262 169 347 329 39 21 chr4 16022447 16022681 -168265981 - L2 LINE L2 -350 2964 2727 3070 126 93 22 chr4 16023365 16023857 -168264805 + MER1A DNA MER1_type 1 527 0 1937 139 71 6 chr4 16023914 16024237 -168264425 - MER2 DNA MER2_type 0 344 1 193 242 81 71 chr4 16024250 16024349 -168264313 + MIR SINE MIR 95 194 -68 275 316 103 6 chr4 16025362 16025536 -168263126 - MER91A DNA MER1_type -5 191 1 465 263 98 40 chr4 16025958 16026278 -168262384 + MLT1I LTR MaLR 82 389 -20 2668 46 0 0 chr4 16026766 16027068 -168261594 - AluY SINE Alu -9 302 1 1002 219 54 5 chr4 16027264 16027469 -168261193 - MER58A DNA MER1_type 0 224 10 210 258 15 45 chr4 16028974 16029040 -168259622 - MIR SINE MIR -93 169 106 530 257 143 0 chr4 16029063 16029238 -168259424 - MIR SINE MIR -61 201 2 1052 213 117 46 chr4 16029551 16029875 -168258787 + MER66A LTR ERV1 27 373 -105 1388 186 60 70 chr4 16030359 16030545 -168258117 + L1MB5 LINE L1 5782 5968 -206 2521 68 0 10 chr4 16030545 16030854 -168257808 + AluSc SINE Alu 1 306 -3 1388 186 60 70 chr4 16030854 16031064 -168257598 + L1MB5 LINE L1 5968 6174 0 855 133 0 23 chr4 16031364 16031492 -168257170 + FLAM_C SINE Alu 2 126 -7 30 27 0 0 chr4 16031492 16031529 -168257133 + AT_rich Low_complexity Low_complexity 1 37 0 491 188 116 0 chr4 16032693 16032805 -168255857 + L1MB5 LINE L1 6044 6168 -6 261 310 62 0 chr4 16033942 16034055 -168254607 + MER117 DNA MER1_type 41 160 -37 723 185 0 0 chr4 16034188 16034334 -168254328 + GA-rich Low_complexity Low_complexity 1 146 0 220 339 60 48 chr4 16034536 16034704 -168253958 + L2 LINE L2 2921 3090 -182 232 310 23 0 chr4 16034945 16035032 -168253630 + MIR SINE MIR 152 240 -22 2254 96 3 0 chr4 16035121 16035438 -168253224 + AluSx SINE Alu 1 318 0 277 163 0 25 chr4 16036142 16036222 -168252440 + (TA)n Simple_repeat Simple_repeat 2 79 0 2033 140 3 16 chr4 16036349 16036657 -168252005 - AluSx SINE Alu -8 304 1 214 273 171 11 chr4 16036686 16036873 -168251789 - MIR SINE MIR -14 248 32 21 0 0 0 chr4 16037436 16037457 -168251205 + AT_rich Low_complexity Low_complexity 1 21 0 1945 109 13 60 chr4 16037615 16037917 -168250745 - AluSx SINE Alu -19 293 6 2508 61 0 0 chr4 16038082 16038378 -168250284 + AluY SINE Alu 1 296 -15 193 342 84 21 chr4 16039845 16040035 -168248627 - L2 LINE L2 -555 2759 2558 461 320 143 41 chr4 16040209 16041276 -168247386 - L2 LINE L2 -993 2321 1146 446 248 0 58 chr4 16041850 16041971 -168246691 + MER58C DNA MER1_type 102 215 0 600 324 8 19 chr4 16042074 16042333 -168246329 - L1ME LINE L1 -303 5818 5563 707 181 16 0 chr4 16042561 16042688 -168245974 + FLAM_C SINE Alu 1 129 -4 350 64 0 0 chr4 16043523 16043570 -168245092 - MADE1 DNA Mariner -33 47 1 534 208 20 7 chr4 16043698 16043847 -168244815 + CT-rich Low_complexity Low_complexity 4 154 0 2254 104 7 3 chr4 16043856 16044153 -168244509 - AluSx SINE Alu -12 300 3 423 0 0 0 chr4 16044388 16044435 -168244227 + (TG)n Simple_repeat Simple_repeat 1 47 0 237 65 0 0 chr4 16045063 16045094 -168243568 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 395 322 101 0 chr4 16046798 16046997 -168241665 + MIR SINE MIR 36 254 -8 587 147 0 78 chr4 16047564 16047680 -168240982 - U6 snRNA snRNA 0 107 1 364 295 145 24 chr4 16048278 16048485 -168240177 - MIR SINE MIR -3 259 28 23 0 0 0 chr4 16048503 16048526 -168240136 + AT_rich Low_complexity Low_complexity 1 23 0 2132 110 30 13 chr4 16048550 16048850 -168239812 + AluSx SINE Alu 1 305 -7 1725 125 61 51 chr4 16049398 16049693 -168238969 - AluJb SINE Alu -14 298 1 220 143 102 0 chr4 16050242 16050291 -168238371 + L2 LINE L2 3248 3301 -12 2291 93 33 0 chr4 16050887 16051189 -168237473 - AluSx SINE Alu 0 312 1 2627 61 0 3 chr4 16051481 16051791 -168236871 + AluY SINE Alu 1 309 -2 792 211 77 29 chr4 16052534 16052743 -168235919 + MER20 DNA MER1_type 1 219 0 258 262 9 93 chr4 16053284 16053391 -168235271 - MIR3 SINE MIR -21 187 90 781 102 87 0 chr4 16053450 16053577 -168235085 + MER85 DNA T2_type 2 139 0 202 307 20 130 chr4 16053741 16053956 -168234706 - L2 LINE L2 -52 3220 2983 2430 103 0 0 chr4 16053956 16054268 -168234394 + AluSx SINE Alu 1 312 0 202 307 20 130 chr4 16054268 16054300 -168234362 - L2 LINE L2 -289 2983 2949 2073 130 0 0 chr4 16054300 16054608 -168234054 + AluSx SINE Alu 1 308 0 202 307 20 130 chr4 16054608 16054703 -168233959 - L2 LINE L2 -323 2949 2914 1554 213 74 98 chr4 16055563 16056238 -168232424 + L1MC4 LINE L1 7384 8042 0 2216 110 0 3 chr4 16056433 16056724 -168231938 + AluSx SINE Alu 3 292 -20 21 0 0 0 chr4 16056898 16056919 -168231743 + AT_rich Low_complexity Low_complexity 1 21 0 409 279 57 8 chr4 16057865 16057987 -168230675 + MIR SINE MIR 7 134 -128 1237 180 48 26 chr4 16058112 16058340 -168230322 + Tigger5 DNA MER2_type 1 233 -2090 447 161 0 54 chr4 16058333 16058426 -168230236 + Tigger5 DNA MER2_type 2235 2322 -1 * 243 0 0 0 chr4 16058764 16058791 -168229871 + (CA)n Simple_repeat Simple_repeat 2 28 0 268 274 78 10 chr4 16058825 16058927 -168229735 + MIR SINE MIR 42 150 -58 190 237 85 34 chr4 16060664 16060723 -168227939 + MIR SINE MIR 14 75 -187 647 152 203 19 chr4 16060739 16060897 -168227765 + MLT1B LTR MaLR 1 187 -203 514 189 8 8 chr4 16060953 16061075 -168227587 + GA-rich Low_complexity Low_complexity 3 124 0 216 273 18 0 chr4 16061130 16061185 -168227477 + MIR SINE MIR 98 153 -55 1017 193 11 21 chr4 16061799 16061986 -168226676 - MER58A DNA MER1_type -3 221 37 610 182 55 79 chr4 16062617 16062782 -168225880 - MER20 DNA MER1_type -57 162 2 279 140 0 0 chr4 16063570 16063620 -168225042 + (TG)n Simple_repeat Simple_repeat 1 50 0 285 29 0 0 chr4 16064599 16064633 -168224029 + (CA)n Simple_repeat Simple_repeat 2 35 0 355 229 101 9 chr4 16064795 16064904 -168223758 + L1ME3A LINE L1 5881 5999 -171 313 393 22 7 chr4 16065737 16065872 -168222790 + MIR3 SINE MIR 24 160 -48 243 0 0 0 chr4 16066190 16066217 -168222445 + (CA)n Simple_repeat Simple_repeat 2 28 0 763 216 0 8 chr4 16066927 16067061 -168221601 + FLAM_A SINE Alu 1 133 0 466 252 25 0 chr4 16067291 16067410 -168221252 - Charlie8 DNA MER1_type -2239 178 57 303 93 0 0 chr4 16068908 16068951 -168219711 + (TA)n Simple_repeat Simple_repeat 2 44 0 1879 55 0 0 chr4 16068951 16069171 -168219491 - L1PA5 LINE L1 -7 6147 5928 2622 38 0 0 chr4 16069171 16069487 -168219175 + L1P LINE L1 4907 5222 -924 293 263 26 0 chr4 16070122 16070198 -168218464 + MER116 DNA Mariner 3 80 0 183 80 0 0 chr4 16070875 16070900 -168217762 + (CCCCCA)n Simple_repeat Simple_repeat 1 25 0 324 64 0 0 chr4 16071846 16071893 -168216769 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 227 283 0 33 chr4 16072241 16072301 -168216361 + L2 LINE L2 3211 3268 -4 1627 134 278 18 chr4 16072525 16072860 -168215802 + MSTA LTR MaLR 5 426 -2 329 264 118 27 chr4 16073035 16073145 -168215517 + MIR SINE MIR 54 173 -89 3890 259 77 60 chr4 16073184 16074309 -168214353 + L1M1 LINE L1 11 1155 -6410 10091 147 18 4 chr4 16074311 16076489 -168212173 + L1M1 LINE L1 2049 4259 -3306 692 160 8 0 chr4 16076489 16076597 -168212065 + L1MA3 LINE L1 6181 6300 -5 486 283 116 5 chr4 16076633 16076831 -168211831 - MIR SINE MIR -7 255 36 250 292 105 13 chr4 16077297 16077427 -168211235 + MIR SINE MIR 6 142 -66 188 188 42 0 chr4 16077704 16077752 -168210910 + GA-rich Low_complexity Low_complexity 2 51 0 295 295 103 13 chr4 16079082 16079238 -168209424 - L2 LINE L2 0 3313 3144 346 227 280 67 chr4 16079238 16079388 -168209274 + MIR SINE MIR 81 262 0 317 198 74 0 chr4 16079800 16079881 -168208781 + LTR37B LTR ERV1 198 284 -184 5512 187 29 9 chr4 16079893 16081400 -168207262 + L1M1 LINE L1 16 1655 -5910 433 289 114 9 chr4 16082957 16083011 -168205651 + L1M1 LINE L1 4308 4355 -3210 1816 128 4 0 chr4 16083011 16083269 -168205393 + AluSx SINE Alu 43 301 -11 433 289 114 9 chr4 16083269 16083442 -168205220 + L1M1 LINE L1 4355 4559 -3006 454 284 14 21 chr4 16083762 16083903 -168204759 + MIR SINE MIR 8 147 -115 512 269 136 100 chr4 16083952 16084025 -168204637 + L1MC4a LINE L1 5532 5601 -2207 1625 152 4 4 chr4 16084025 16084282 -168204380 + AluJo SINE Alu 1 257 -55 512 269 136 100 chr4 16084282 16084789 -168203873 + L1MC4a LINE L1 5601 6133 -1675 1608 114 4 21 chr4 16084914 16085151 -168203511 - AluJb SINE Alu -13 299 67 203 228 193 0 chr4 16085226 16085283 -168203379 + L2 LINE L2 3246 3313 0 1950 176 143 14 chr4 16086257 16086488 -168202174 - MLT1C LTR MaLR 0 467 267 2509 52 3 3 chr4 16086488 16086795 -168201867 - AluY SINE Alu -4 307 1 1950 176 143 14 chr4 16086795 16086977 -168201685 - MLT1C LTR MaLR -200 267 1 290 212 45 0 chr4 16087447 16087513 -168201149 + L1ME4a LINE L1 5844 5912 -209 1888 223 65 80 chr4 16087582 16087920 -168200742 + L1MC5 LINE L1 7181 7522 -439 2051 118 7 0 chr4 16087920 16088208 -168200454 + AluSx SINE Alu 1 290 -22 1888 223 65 80 chr4 16088208 16088617 -168200045 + L1MC5 LINE L1 7522 7917 -44 2034 222 92 25 chr4 16088637 16089204 -168199458 + L1ME3A LINE L1 5554 6158 -12 30 0 0 0 chr4 16089204 16089234 -168199428 + AT_rich Low_complexity Low_complexity 1 30 0 1892 108 0 0 chr4 16089247 16089521 -168199141 + AluSq SINE Alu 33 306 0 543 163 0 20 chr4 16089521 16089619 -168199043 - MER5A DNA MER1_type -83 106 11 198 278 91 87 chr4 16089817 16090058 -168198604 + L2 LINE L2 2842 3083 -189 248 349 24 0 chr4 16090264 16090347 -168198315 + MIR SINE MIR 34 118 -144 1323 239 104 19 chr4 16090395 16090817 -168197845 + MLT1C LTR MaLR 8 465 -2 685 268 38 38 chr4 16090926 16091139 -168197523 - MIR SINE MIR -21 241 29 231 276 61 68 chr4 16091779 16091942 -168196720 + MIR SINE MIR 4 165 -97 * 576 219 73 0 chr4 16091939 16092076 -168196586 + MIR SINE MIR 31 177 -85 2696 163 24 24 chr4 16092819 16093322 -168195340 + LTR54 LTR ERV1 3 505 -5 2229 125 0 6 chr4 16093558 16093871 -168194791 + AluSx SINE Alu 2 312 0 244 216 72 82 chr4 16094197 16094294 -168194368 + MIR SINE MIR 68 163 -99 2064 165 29 63 chr4 16094325 16094738 -168193924 - MER57A LTR ERV1 0 403 5 602 179 0 17 chr4 16094783 16094900 -168193762 - MER57A-int LTR ERV1 -11 7526 7412 575 168 152 69 chr4 16094901 16095184 -168193478 - LTR54B LTR ERV1 -210 300 1 221 344 10 10 chr4 16095566 16095662 -168193000 - MIR SINE MIR -119 143 48 1448 207 18 84 chr4 16096036 16096427 -168192235 + MLT1A2 LTR MaLR 10 374 0 15344 159 34 21 chr4 16096786 16097372 -168191290 + L1MA3 LINE L1 1841 2418 -5147 4368 120 25 73 chr4 16097372 16097806 -168190856 - LTR8 LTR ERV1 0 691 304 1681 94 0 0 chr4 16097806 16098019 -168190643 - AluSg/x SINE Alu -15 295 83 4368 120 25 73 chr4 16098019 16098310 -168190352 - LTR8 LTR ERV1 -387 304 1 15344 159 34 21 chr4 16098310 16102330 -168186332 + L1MA3 LINE L1 2418 6521 -1044 2416 63 10 3 chr4 16102330 16102632 -168186030 - AluY SINE Alu -7 304 1 15344 159 34 21 chr4 16102632 16102877 -168185785 + L1MA3 LINE L1 6521 6761 -804 839 132 0 0 chr4 16102880 16102994 -168185668 + AluJb SINE Alu 5 118 -194 387 0 0 0 chr4 16103000 16103043 -168185619 + (TAA)n Simple_repeat Simple_repeat 2 44 0 6736 101 13 9 chr4 16103044 16104017 -168184645 + L1MA3 LINE L1 6748 7724 0 780 212 5 26 chr4 16104024 16104217 -168184445 + LTR37A LTR ERV1 235 423 -3 273 284 40 0 chr4 16104803 16104877 -168183785 - MER20 DNA MER1_type -83 136 60 236 196 20 0 chr4 16105036 16105087 -168183575 + Charlie8 DNA MER1_type 2356 2407 -10 332 301 118 0 chr4 16105119 16105255 -168183407 - MIR SINE MIR -58 204 53 288 303 83 23 chr4 16105904 16106036 -168182626 - MIR SINE MIR -12 250 111 280 284 11 53 chr4 16106077 16106172 -168182490 - MIR SINE MIR -20 242 152 407 301 124 0 chr4 16106194 16106307 -168182355 - L2 LINE L2 -23 3249 3123 1861 193 107 21 chr4 16106378 16106808 -168181854 - MLT1C LTR MaLR 0 467 1 392 343 29 15 chr4 16106812 16106949 -168181713 - MIR SINE MIR -120 142 4 360 236 179 0 chr4 16107223 16107363 -168181299 - L2 LINE L2 -266 3047 2883 2145 134 109 3 chr4 16108263 16108592 -168180070 - THE1B LTR MaLR 0 364 1 478 274 30 50 chr4 16108802 16109003 -168179659 + MIR SINE MIR 23 219 -43 306 184 238 54 chr4 16109741 16109888 -168178774 + LTR67 LTR ERVL 356 529 -28 391 178 52 44 chr4 16110113 16110248 -168178414 - MER96B DNA MER1_type? -238 179 44 282 293 81 16 chr4 16110306 16110429 -168178233 - L2 LINE L2 -1 3271 3141 540 258 0 8 chr4 16112081 16112209 -168176453 + L2 LINE L2 3187 3313 0 425 276 29 26 chr4 16112235 16112379 -168176283 + MIR SINE MIR 16 160 -62 1643 186 0 0 chr4 16112398 16112678 -168175984 + AluJb SINE Alu 1 280 -32 565 37 0 106 chr4 16112695 16112883 -168175779 + (GGA)n Simple_repeat Simple_repeat 3 170 0 211 119 71 0 chr4 16112885 16112927 -168175735 + GA-rich Low_complexity Low_complexity 2 46 0 308 315 73 45 chr4 16113026 16113204 -168175458 - L2 LINE L2 -5 3308 3126 259 294 144 39 chr4 16113277 16113430 -168175232 + MIR3 SINE MIR 32 200 -8 1989 139 45 12 chr4 16113786 16114123 -168174539 - MER7A DNA MER2_type 0 346 1 489 305 63 11 chr4 16114228 16114402 -168174260 + MIR SINE MIR 3 185 -77 407 338 149 14 chr4 16114756 16114978 -168173684 + MIR SINE MIR 5 256 -6 886 119 0 38 chr4 16115155 16115340 -168173322 + (GGGA)n Simple_repeat Simple_repeat 1 178 0 280 255 92 10 chr4 16115699 16115797 -168172865 - MIR SINE MIR -62 200 95 22 0 0 0 chr4 16115857 16115879 -168172783 + AT_rich Low_complexity Low_complexity 1 22 0 1513 204 0 7 chr4 16115879 16116163 -168172499 - AluJo SINE Alu -30 282 1 344 385 8 0 chr4 16116470 16116592 -168172070 + MIR3 SINE MIR 9 131 -77 301 259 53 61 chr4 16117118 16117249 -168171413 - MIR3 SINE MIR -33 175 46 188 180 40 20 chr4 16117276 16117326 -168171336 + MIR SINE MIR 50 100 -162 424 267 188 41 chr4 16117962 16118090 -168170572 + L2 LINE L2 2626 2734 -579 2175 152 98 0 chr4 16118090 16118478 -168170184 + MSTB LTR MaLR 1 426 0 424 267 188 41 chr4 16118478 16118895 -168169767 + L2 LINE L2 2734 3268 -45 307 257 20 47 chr4 16120096 16120244 -168168418 + L1ME4a LINE L1 5978 6121 0 491 273 96 43 chr4 16121191 16121378 -168167284 + MIR SINE MIR 48 244 -18 1366 146 55 49 chr4 16121512 16121820 -168166842 + AluJo SINE Alu 1 310 -2 974 276 166 18 chr4 16122322 16122757 -168165905 - L2 LINE L2 -1 3312 2814 1387 142 9 47 chr4 16124614 16124917 -168163745 + MLT1B LTR MaLR 1 345 -122 549 205 16 39 chr4 16124933 16125060 -168163602 - MER61D LTR ERV1 -17 484 361 535 167 167 0 chr4 16125658 16125766 -168162896 + MLT1B LTR MaLR 342 467 0 331 238 67 38 chr4 16125767 16125872 -168162790 - MIR SINE MIR -90 172 65 405 280 26 67 chr4 16126227 16126420 -168162242 - MIR SINE MIR -66 196 12 227 240 93 27 chr4 16126401 16126476 -168162186 - L2 LINE L2 -4 3268 3189 * 1452 160 27 0 chr4 16127264 16127527 -168161135 - L1MB5 LINE L1 0 6174 5905 571 243 40 7 chr4 16127820 16127968 -168160694 + MIR SINE MIR 80 232 -30 180 266 101 38 chr4 16127990 16128069 -168160593 - MIR SINE MIR -88 174 91 364 243 47 19 chr4 16128103 16128210 -168160452 - MIR SINE MIR -91 171 62 557 272 70 35 chr4 16129510 16129738 -168158924 - MIR SINE MIR -10 252 17 323 222 156 11 chr4 16131285 16131375 -168157287 - MIR SINE MIR -50 212 110 345 307 44 7 chr4 16131377 16131514 -168157148 - MLT1K LTR MaLR 0 588 447 201 200 67 0 chr4 16132023 16132068 -168156594 - L2 LINE L2 0 3313 3266 450 0 0 0 chr4 16132239 16132289 -168156373 + (CA)n Simple_repeat Simple_repeat 1 50 0 1685 178 0 29 chr4 16132526 16132841 -168155821 - AluJb SINE Alu -4 308 3 1759 126 0 60 chr4 16133556 16133911 -168154751 - AluSx SINE Alu 0 337 1 2208 104 0 3 chr4 16134358 16134667 -168153995 - AluSx SINE Alu -3 309 2 2022 224 143 15 chr4 16134691 16135424 -168153238 - L1M4 LINE L1 -1949 4197 3371 21 0 0 0 chr4 16135812 16135833 -168152829 + AT_rich Low_complexity Low_complexity 1 21 0 452 251 82 71 chr4 16136432 16136615 -168152047 - MLT1J LTR MaLR -49 462 278 373 250 35 42 chr4 16136636 16136780 -168151882 + MLT1A1 LTR MaLR 1 143 -222 * 594 199 8 69 chr4 16136758 16136889 -168151773 + MLT1A1 LTR MaLR 94 217 -157 737 225 47 12 chr4 16137575 16137744 -168150918 - MER45A DNA AcHobo 0 178 4 2271 215 53 55 chr4 16138233 16138778 -168149884 - MER77 LTR ERV1 -8 597 54 326 271 36 22 chr4 16138885 16139008 -168149654 - MIR SINE MIR -66 142 64 613 248 75 49 chr4 16139991 16140352 -168148310 - MLT1C LTR MaLR -96 371 5 292 279 67 29 chr4 16140353 16140457 -168148205 - L2 LINE L2 -28 3285 3178 2090 159 6 0 chr4 16140460 16140799 -168147863 + MER47A DNA MER2_type 1 341 -25 287 289 83 16 chr4 16140818 16140939 -168147723 - L2 LINE L2 -155 3158 3030 1541 138 54 4 chr4 16141104 16141364 -168147298 - MER47A DNA MER2_type -63 303 31 919 191 0 0 chr4 16141745 16141902 -168146760 - FRAM SINE Alu -5 161 5 1790 214 42 20 chr4 16142505 16142962 -168145700 + MLT1C LTR MaLR 1 467 0 1841 153 130 84 chr4 16144010 16144473 -168144189 - MER74A LTR ERVL -60 498 15 3510 186 60 3 chr4 16145657 16146351 -168142311 + L1MB8 LINE L1 5445 6178 0 3562 158 17 12 chr4 16146354 16146995 -168141667 + L1MC1 LINE L1 5677 6320 -13 1182 167 23 0 chr4 16146999 16147214 -168141448 + L1MA4 LINE L1 6035 6254 -46 4653 62 25 6 chr4 16147214 16148230 -168140432 + MER11A LTR ERVK 1 1266 0 252 106 0 0 chr4 16148230 16148277 -168140385 + L1MA4 LINE L1 6250 6296 -4 689 102 0 10 chr4 16148450 16148548 -168140114 + MER4A LTR ERV1 2 98 -566 1952 99 161 78 chr4 16148548 16148921 -168139741 + MER4A LTR ERV1 261 664 0 341 274 137 13 chr4 16148927 16149080 -168139582 - L1ME4a LINE L1 -254 5867 5696 218 354 0 0 chr4 16149125 16149207 -168139455 - MIR SINE MIR -10 252 171 1095 110 0 0 chr4 16149208 16149362 -168139300 + AluY SINE Alu 142 295 -16 488 329 25 6 chr4 16149372 16149533 -168139129 - MIR SINE MIR -89 173 10 354 313 61 38 chr4 16149562 16149875 -168138787 - L1ME4a LINE L1 -517 5604 5285 1913 125 0 4 chr4 16149952 16150233 -168138429 - AluSx SINE Alu -32 280 1 297 329 133 0 chr4 16151449 16151592 -168137070 + MIR SINE MIR 26 187 -75 346 222 118 19 chr4 16151793 16151914 -168136748 + MIR SINE MIR 4 124 -84 223 286 63 0 chr4 16152402 16152465 -168136197 + MIR SINE MIR 84 150 -112 2027 134 0 13 chr4 16152796 16153109 -168135553 - AluSx SINE Alu -3 309 1 249 164 73 18 chr4 16154139 16154194 -168134468 + MLT1K LTR MaLR 529 586 -2 189 299 65 56 chr4 16154302 16154409 -168134253 + L2 LINE L2 3161 3268 -4 367 319 44 19 chr4 16154492 16154698 -168133964 - MIR SINE MIR -57 205 1 46 78 0 0 chr4 16155708 16155810 -168132852 + AT_rich Low_complexity Low_complexity 1 102 0 353 274 112 27 chr4 16155939 16156262 -168132400 + L1ME4a LINE L1 5564 5993 -128 1921 115 0 14 chr4 16156274 16156562 -168132100 - L1PA14 LINE L1 -16 6145 5862 856 184 11 6 chr4 16156845 16157019 -168131643 + FRAM SINE Alu 1 167 -9 576 291 119 26 chr4 16157328 16157555 -168131107 + MIR SINE MIR 9 256 -6 2097 104 14 0 chr4 16157558 16157855 -168130807 + AluSx SINE Alu 1 301 -11 453 337 181 21 chr4 16158692 16159113 -168129549 + L2 LINE L2 2768 3259 -54 207 258 32 86 chr4 16159320 16159413 -168129249 + MIR SINE MIR 17 104 -104 197 189 113 0 chr4 16159573 16159626 -168129036 - MER5A DNA MER1_type -4 185 127 2427 68 0 0 chr4 16159630 16159922 -168128740 + AluSx SINE Alu 1 292 -20 657 228 15 0 chr4 16159936 16160072 -168128590 - MER5A DNA MER1_type -51 138 1 299 259 71 0 chr4 16160122 16160207 -168128455 - MIR SINE MIR -54 208 118 518 261 70 25 chr4 16160452 16160609 -168128053 + MIR SINE MIR 51 214 -48 299 206 82 0 chr4 16161086 16161159 -168127503 - L2 LINE L2 -1 3312 3234 494 254 136 41 chr4 16162543 16162956 -168125706 - MLT1J LTR MaLR -51 460 9 186 261 65 0 chr4 16163074 16163120 -168125542 - MIR3 SINE MIR -7 201 153 380 233 81 0 chr4 16163184 16163270 -168125392 + L2 LINE L2 3211 3303 -10 25 0 0 0 chr4 16165230 16165255 -168123407 + AT_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chr4 16165751 16165784 -168122878 + AT_rich Low_complexity Low_complexity 1 33 0 398 266 8 8 chr4 16166702 16166830 -168121832 - L1MA10 LINE L1 -8 6326 6199 851 141 7 22 chr4 16167160 16167295 -168121367 - FLAM_C SINE Alu -10 133 1 2547 57 0 0 chr4 16167850 16168148 -168120514 + AluY SINE Alu 1 298 -13 700 316 148 19 chr4 16168237 16168962 -168119700 + L2 LINE L2 2421 3248 -65 2349 92 7 0 chr4 16169548 16169852 -168118810 - AluSg SINE Alu -4 306 1 299 253 27 11 chr4 16170133 16170306 -168118356 + MIR SINE MIR 21 262 0 440 217 103 75 chr4 16170319 16170600 -168118062 - L1ME4a LINE L1 -247 5874 5586 1833 152 17 0 chr4 16170677 16170966 -168117696 - AluJo SINE Alu -13 299 6 265 306 173 33 chr4 16171011 16171347 -168117315 + L2 LINE L2 2853 3235 -78 235 206 110 41 chr4 16172320 16172393 -168116269 - L2 LINE L2 -9 3263 3186 193 202 173 19 chr4 16172656 16172760 -168115902 + L2 LINE L2 3096 3215 -98 2204 109 3 0 chr4 16175370 16175686 -168112976 - AluSq SINE Alu 0 317 1 424 161 0 0 chr4 16175763 16175825 -168112837 - AluSc SINE Alu -116 193 132 1065 74 0 0 chr4 16175976 16176111 -168112551 - AluY SINE Alu -7 304 170 490 262 189 9 chr4 16176206 16176439 -168112223 - L1ME LINE L1 -318 5803 5529 21 36 0 0 chr4 16177359 16177387 -168111275 + AT_rich Low_complexity Low_complexity 1 28 0 31 58 0 0 chr4 16177600 16177652 -168111010 + AT_rich Low_complexity Low_complexity 1 52 0 25 0 0 0 chr4 16178311 16178336 -168110326 + AT_rich Low_complexity Low_complexity 1 25 0 2055 102 60 0 chr4 16178991 16179274 -168109388 + AluSx SINE Alu 1 300 -12 297 303 81 0 chr4 16179276 16179375 -168109287 - L2 LINE L2 -14 3299 3193 974 180 40 0 chr4 16179613 16179841 -168108821 + L1MA4 LINE L1 6060 6296 -4 287 212 61 30 chr4 16180082 16180148 -168108514 + MIR SINE MIR 34 101 -107 287 299 118 16 chr4 16180176 16180303 -168108359 + MIR SINE MIR 93 232 -30 262 293 49 0 chr4 16181190 16181272 -168107390 + L2 LINE L2 3187 3272 0 1845 134 31 61 chr4 16181642 16182001 -168106661 - MER7A DNA MER2_type 0 346 1 225 0 0 0 chr4 16182319 16182362 -168106300 + (TG)n Simple_repeat Simple_repeat 1 68 0 225 0 0 0 chr4 16182362 16182387 -168106275 + (TG)n Simple_repeat Simple_repeat 2 26 0 1977 97 87 17 chr4 16184137 16184425 -168104237 - AluSx SINE Alu -4 308 1 2477 225 88 20 chr4 16186593 16187765 -168100897 - L1ME2 LINE L1 -13 6151 4901 643 145 176 57 chr4 16187765 16187928 -168100734 + Charlie1 DNA MER1_type 2508 2707 -54 2244 107 0 0 chr4 16187928 16188226 -168100436 - AluSq SINE Alu -15 298 1 643 145 176 57 chr4 16188226 16188289 -168100373 + Charlie1 DNA MER1_type 2707 2761 0 344 299 21 42 chr4 16188434 16188578 -168100084 - Charlie1a DNA MER1_type -1298 157 17 333 288 101 22 chr4 16188702 16188841 -168099821 + MIR SINE MIR 20 169 -93 321 259 62 0 chr4 16189696 16189777 -168098885 + L2 LINE L2 3227 3312 -1 2424 64 7 0 chr4 16191326 16191624 -168097038 + AluY SINE Alu 1 300 -11 556 276 182 30 chr4 16191887 16192151 -168096511 + L2 LINE L2 3008 3311 -2 * 631 255 95 45 chr4 16192146 16192389 -168096273 - MIR SINE MIR 0 262 8 2158 106 3 3 chr4 16193026 16193327 -168095335 - AluSx SINE Alu -11 301 1 325 200 106 0 chr4 16193802 16193887 -168094775 + MER5A DNA MER1_type 13 106 -83 986 288 129 2 chr4 16194579 16195083 -168093579 - L1MC4a LINE L1 -1885 5923 5356 542 261 118 49 chr4 16196943 16197146 -168091516 - MIR SINE MIR -26 236 20 360 0 0 0 chr4 16197548 16197588 -168091074 + (TTC)n Simple_repeat Simple_repeat 2 41 0 1055 69 0 0 chr4 16197590 16197720 -168090942 - AluSq/x SINE Alu -180 133 4 1916 129 14 11 chr4 16202290 16202577 -168086085 - AluJo SINE Alu -18 294 7 1812 177 3 10 chr4 16203019 16203318 -168085344 - AluJb SINE Alu -14 298 2 31 0 0 0 chr4 16204047 16204078 -168084584 + AT_rich Low_complexity Low_complexity 1 31 0 241 351 91 6 chr4 16204423 16204588 -168084074 - MIR SINE MIR -24 238 60 23 33 0 0 chr4 16204983 16205013 -168083649 + AT_rich Low_complexity Low_complexity 1 30 0 424 140 150 40 chr4 16206065 16206165 -168082497 + MLT1L LTR MaLR 2 112 -278 1833 142 31 3 chr4 16206174 16206499 -168082163 + MLT1B LTR MaLR 57 390 0 21 36 0 0 chr4 16207116 16207144 -168081518 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr4 16210733 16210776 -168077886 + AT_rich Low_complexity Low_complexity 1 43 0 230 214 0 0 chr4 16210919 16210961 -168077701 + LTR67 LTR ERVL 97 138 -419 * 769 275 107 27 chr4 16210938 16211346 -168077316 + MLT1L LTR MaLR 74 607 -8 1322 171 0 0 chr4 16211434 16211639 -168077023 - AluJb SINE Alu -23 289 85 325 336 26 0 chr4 16212309 16212422 -168076240 + MIR SINE MIR 147 262 0 229 212 76 61 chr4 16212709 16212775 -168075887 - LTR13 LTR ERVK -282 725 659 497 331 0 0 chr4 16213119 16213255 -168075407 - MIR SINE MIR -125 137 2 21 0 0 0 chr4 16213658 16213679 -168074983 + AT_rich Low_complexity Low_complexity 1 21 0 409 290 81 21 chr4 16214238 16214424 -168074238 + MER112 DNA MER1_type 63 259 -1 2058 110 10 13 chr4 16217567 16217866 -168070796 + AluSg SINE Alu 1 298 -12 409 345 148 18 chr4 16218986 16219542 -168069120 + L2 LINE L2 2232 2859 -455 228 314 202 40 chr4 16219615 16219863 -168068799 + L2 LINE L2 2976 3263 -9 2109 110 3 7 chr4 16220678 16220970 -168067692 + AluSq SINE Alu 1 291 -22 720 219 49 12 chr4 16221634 16221798 -168066864 - MIR SINE MIR -81 181 12 356 237 152 56 chr4 16222231 16222444 -168066218 - MIR3 SINE MIR -33 229 20 279 196 0 0 chr4 16222688 16222734 -168065928 - Alu SINE Alu -256 46 1 1914 102 7 46 chr4 16222822 16223127 -168065535 - AluSx SINE Alu -19 293 1 394 262 133 119 chr4 16227771 16228255 -168060407 + L1M2 LINE L1 574 1050 -5799 216 0 0 0 chr4 16228255 16228279 -168060383 + (CCG)n Simple_repeat Simple_repeat 2 25 0 394 262 133 119 chr4 16228279 16228331 -168060331 + L1M2 LINE L1 1050 1100 -5749 195 42 0 0 chr4 16228331 16228355 -168060307 + (CCG)n Simple_repeat Simple_repeat 2 25 0 394 262 133 119 chr4 16228355 16228593 -168060069 + L1M2 LINE L1 1100 1360 -5489 28 0 0 0 chr4 16228690 16228718 -168059944 + GC_rich Low_complexity Low_complexity 1 28 0 2398 73 0 16 chr4 16230082 16230397 -168058265 + AluSg SINE Alu 1 310 0 2151 105 0 16 chr4 16230722 16231037 -168057625 + AluSg SINE Alu 1 310 0 267 31 0 0 chr4 16231063 16231095 -168057567 + (A)n Simple_repeat Simple_repeat 1 32 0 198 301 34 62 chr4 16232386 16232532 -168056130 + MIR SINE MIR 4 145 -117 242 241 145 62 chr4 16232750 16232895 -168055767 + MIR3 SINE MIR 37 193 -15 209 0 98 0 chr4 16235658 16235699 -168052963 + (TAATG)n Simple_repeat Simple_repeat 1 45 0 204 256 275 25 chr4 16236219 16236379 -168052283 + MIR3 SINE MIR 2 201 -7 241 370 84 33 chr4 16236526 16236885 -168051777 - L2 LINE L2 -6 3266 2890 381 240 190 0 chr4 16238335 16238456 -168050206 + MIR SINE MIR 51 194 -68 235 323 55 92 chr4 16238458 16238622 -168050040 - L2 LINE L2 0 3272 3115 249 325 86 60 chr4 16238862 16239259 -168049403 - L2 LINE L2 -584 2730 2324 372 262 271 21 chr4 16239931 16240267 -168048395 - L2 LINE L2 -985 2329 1910 251 371 57 0 chr4 16241113 16241218 -168047444 - L2 LINE L2 -20 3252 3142 2557 106 19 33 chr4 16243157 16243525 -168045137 + THE1B LTR MaLR 1 363 -1 304 159 48 0 chr4 16243579 16243642 -168045020 - L1MC4a LINE L1 -1781 6027 5962 325 0 44 0 chr4 16243642 16243687 -168044975 + (TA)n Simple_repeat Simple_repeat 2 48 0 883 250 37 16 chr4 16243916 16244160 -168044502 - L1MC4a LINE L1 -1883 5925 5677 273 326 20 10 chr4 16245318 16245498 -168043164 + MER93b-int LTR ERV1 6579 6655 -146 453 220 34 14 chr4 16245831 16245973 -168042689 + MER93b LTR ERV1 61 214 -188 1211 180 3 95 chr4 16245990 16246284 -168042378 - AluJo SINE Alu -16 296 30 744 189 31 19 chr4 16246288 16246447 -168042215 + MER93a LTR ERV1 242 402 0 1671 172 31 3 chr4 16246577 16246867 -168041795 - AluJb SINE Alu -14 298 1 3373 85 21 7 chr4 16247301 16247738 -168040924 - MLT2A1 LTR ERVL -1 443 1 577 290 70 14 chr4 16248049 16248263 -168040399 + MIR SINE MIR 37 262 0 211 292 67 50 chr4 16248505 16248625 -168040037 + L2 LINE L2 2943 3064 -208 2267 107 0 0 chr4 16249032 16249358 -168039304 - AluSx SINE Alu 0 326 1 968 230 64 55 chr4 16249682 16250043 -168038619 - LTR16A1 LTR ERVL 0 457 94 280 361 161 4 chr4 16252116 16252346 -168036316 - L2 LINE L2 -562 2752 2487 245 363 50 61 chr4 16253369 16253621 -168035041 + L2 LINE L2 1851 2099 -1215 2561 59 0 0 chr4 16253621 16253925 -168034737 - AluY SINE Alu -7 304 1 245 363 50 61 chr4 16253925 16254049 -168034613 + L2 LINE L2 2099 2223 -1091 209 169 13 52 chr4 16254227 16254304 -168034358 + (CATATA)n Simple_repeat Simple_repeat 1 74 0 230 315 22 22 chr4 16254325 16254417 -168034245 + MER5B DNA MER1_type 57 148 -30 698 140 9 0 chr4 16254429 16254536 -168034126 - L1PB1 LINE L1 -5 6146 6039 411 372 36 65 chr4 16254585 16255062 -168033600 + L2 LINE L2 2777 3243 -29 1418 305 143 11 chr4 16255169 16256097 -168032565 + L2 LINE L2 2232 3311 -2 2033 120 0 33 chr4 16257213 16257537 -168031125 - AluSq SINE Alu 0 313 1 26 0 0 0 chr4 16257905 16257931 -168030731 + AT_rich Low_complexity Low_complexity 1 26 0 2083 156 140 8 chr4 16257947 16258325 -168030337 - MSTA LTR MaLR 0 428 1 504 305 115 13 chr4 16459721 16459947 -167828715 + MIR SINE MIR 14 262 0 258 178 0 0 chr4 16459963 16460008 -167828654 - MER82 DNA MER2_type -1 652 608 2141 148 46 62 chr4 16460009 16460448 -167828214 + MSTB1 LTR MaLR 1 432 0 1028 188 5 0 chr4 16460448 16460655 -167828007 + MSTB1-int LTR MaLR 1 208 -1443 183 311 0 16 chr4 16460906 16460967 -167827695 + MIR SINE MIR 80 139 -123 2355 99 0 0 chr4 16461019 16461323 -167827339 + AluSp SINE Alu 1 304 -9 1834 175 5 72 chr4 16462011 16462429 -167826233 + MLT1B LTR MaLR 1 390 0 230 355 136 24 chr4 16462535 16462776 -167825886 - L2 LINE L2 -256 3057 2801 243 357 64 35 chr4 16463196 16463367 -167825295 + L2 LINE L2 2992 3167 -105 1660 246 53 9 chr4 16463456 16463986 -167824676 + L1ME1 LINE L1 5623 6159 -7 3109 100 9 0 chr4 16465182 16465612 -167823050 + MER57B LTR ERV1 1 434 0 430 267 55 89 chr4 16465632 16465834 -167822828 - MIR3 SINE MIR -10 198 4 21 0 0 0 chr4 16466331 16466352 -167822310 + AT_rich Low_complexity Low_complexity 1 21 0 1761 102 4 0 chr4 16466827 16467076 -167821586 - AluSq SINE Alu 0 307 58 340 235 62 0 chr4 16467159 16467240 -167821422 + MIR SINE MIR 102 187 -75 2257 115 0 6 chr4 16467250 16467562 -167821100 - AluSx SINE Alu -2 310 1 303 301 55 97 chr4 16467659 16467948 -167820714 + L2 LINE L2 2992 3268 -4 2198 192 42 65 chr4 16468513 16469080 -167819582 - MLT2B3 LTR ERVL 0 554 1 289 183 33 0 chr4 16469532 16469592 -167819070 - MLT1K LTR MaLR -522 66 5 24 32 0 0 chr4 16470427 16470458 -167818204 + AT_rich Low_complexity Low_complexity 1 31 0 206 356 11 22 chr4 16470750 16470840 -167817822 - MIR SINE MIR -157 105 17 433 248 62 16 chr4 16471255 16471384 -167817278 + L2 LINE L2 3137 3271 -1 811 292 117 3 chr4 16471875 16472252 -167816410 - LTR33A LTR ERVL 0 523 104 274 364 70 7 chr4 16472515 16472658 -167816004 + MIR SINE MIR 99 250 -12 212 244 0 0 chr4 16472741 16472786 -167815876 + CT-rich Low_complexity Low_complexity 5 49 0 466 162 50 0 chr4 16473166 16473265 -167815397 - L1P4 LINE L1 -440 5726 5623 1671 129 4 0 chr4 16473265 16473544 -167815118 + L1P4 LINE L1 5318 5597 -569 3344 53 0 12 chr4 16473564 16473994 -167814668 - L1PA7 LINE L1 -8 6146 5722 421 318 33 47 chr4 16474595 16474656 -167814006 - L2 LINE L2 -556 2758 2698 1725 178 0 32 chr4 16474656 16474971 -167813691 + AluJo SINE Alu 1 305 -7 421 318 33 47 chr4 16474971 16475120 -167813542 - L2 LINE L2 -616 2698 2551 200 318 16 0 chr4 16476028 16476091 -167812571 + MIR SINE MIR 79 142 -120 274 336 8 67 chr4 16476265 16476399 -167812263 + MIR SINE MIR 20 145 -63 11044 204 36 30 chr4 16476756 16481192 -167807470 - L1MA9 LINE L1 -10 6538 2055 449 283 45 30 chr4 16481711 16481968 -167806694 - L1MA9 LINE L1 -5716 597 267 1933 126 73 22 chr4 16482097 16482454 -167806208 + THE1C LTR MaLR 1 375 0 2251 94 0 3 chr4 16482538 16482837 -167805825 + AluSg1 SINE Alu 1 298 -11 203 0 37 0 chr4 16482840 16482867 -167805795 + (TAA)n Simple_repeat Simple_repeat 2 29 0 209 239 30 30 chr4 16482927 16482994 -167805668 - L2 LINE L2 -5 3267 3201 716 282 5 5 chr4 16483767 16483955 -167804707 - MIR SINE MIR -71 191 4 202 354 90 45 chr4 16484027 16484205 -167804457 - L2 LINE L2 -16 3256 3071 217 364 91 0 chr4 16484221 16484331 -167804331 - MIR SINE MIR -64 144 25 228 384 30 8 chr4 16484373 16484506 -167804156 + MIR3 SINE MIR 73 208 0 795 267 58 30 chr4 16485089 16485520 -167803142 + MLT1C LTR MaLR 16 467 0 396 194 42 42 chr4 16486014 16486153 -167802509 - MLT1J1 LTR MaLR -265 246 69 638 226 0 0 chr4 16486333 16486466 -167802196 + FLAM_C SINE Alu 1 133 -10 2496 57 0 0 chr4 16486543 16486839 -167801823 + AluY SINE Alu 1 296 -15 305 305 138 12 chr4 16487151 16487318 -167801344 - MIR SINE MIR -24 238 51 191 347 67 0 chr4 16488796 16488871 -167799791 - MIR SINE MIR -142 120 41 212 246 136 73 chr4 16489235 16489345 -167799317 + MIR SINE MIR 20 136 -72 2463 170 47 2 chr4 16489758 16490205 -167798457 - MLT1C LTR MaLR 0 467 1 24 0 0 0 chr4 16490586 16490610 -167798052 + AT_rich Low_complexity Low_complexity 1 24 0 246 329 25 0 chr4 16490930 16491009 -167797653 + MIR SINE MIR 110 190 -72 200 211 0 0 chr4 16491084 16491122 -167797540 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 184 224 134 30 chr4 16491209 16491276 -167797386 - L3 LINE CR1 -117 1460 1387 * 535 307 42 46 chr4 16491273 16491511 -167797151 - MIR SINE MIR -18 244 8 604 318 10 5 chr4 16491535 16491762 -167796900 + MIR SINE MIR 25 251 -11 883 295 13 0 chr4 16492079 16492303 -167796359 - MIR SINE MIR -10 252 26 1134 190 82 128 chr4 16492545 16493045 -167795617 + MLT1D LTR MaLR 26 502 -3 2376 196 20 14 chr4 16493147 16493702 -167794960 + L1MB7 LINE L1 5618 6175 -9 260 140 0 40 chr4 16493777 16493827 -167794835 - MLT2C2 LTR ERVL 0 464 417 326 23 0 23 chr4 16493848 16493892 -167794770 + (TG)n Simple_repeat Simple_repeat 2 44 0 1739 218 78 22 chr4 16493896 16494346 -167794316 - MLT2B1 LTR ERVL -45 475 1 335 303 113 22 chr4 16494465 16494650 -167794012 - MIR SINE MIR -38 224 23 409 252 24 49 chr4 16494849 16494972 -167793690 + MIR SINE MIR 116 235 -27 838 187 6 0 chr4 16495062 16495244 -167793418 + L1MA6 LINE L1 6111 6293 -7 2271 89 0 25 chr4 16495453 16495769 -167792893 - AluY SINE Alu -3 308 1 283 252 19 56 chr4 16496456 16496563 -167792099 + MIR3 SINE MIR 101 203 -5 483 193 118 50 chr4 16498053 16498214 -167790448 - MLT1H LTR MaLR 0 549 378 296 295 0 38 chr4 16498623 16498728 -167789934 - MIR3 SINE MIR -1 207 107 3504 232 61 68 chr4 16499681 16501097 -167787565 + MST-int LTR MaLR 246 1651 0 664 162 92 0 chr4 16501102 16501244 -167787418 + MSTB1 LTR MaLR 161 315 -117 2296 253 48 2 chr4 16501249 16501564 -167787098 - MER82 DNA MER2_type -40 613 314 1697 220 30 0 chr4 16501564 16501901 -167786761 - MER7A DNA MER2_type -1 345 1 2296 253 48 2 chr4 16501901 16502169 -167786493 - MER82 DNA MER2_type -339 314 3 2023 162 0 0 chr4 16502262 16502571 -167786091 - AluSx SINE Alu -3 309 1 243 61 0 0 chr4 16502589 16502622 -167786040 + (TC)n Simple_repeat Simple_repeat 2 34 0 249 33 0 0 chr4 16502623 16502653 -167786009 + (TG)n Simple_repeat Simple_repeat 2 31 0 23 0 0 0 chr4 16504174 16504197 -167784465 + AT_rich Low_complexity Low_complexity 1 23 0 2317 114 0 16 chr4 16504500 16504817 -167783845 + AluSq SINE Alu 1 312 -1 322 308 23 58 chr4 16505246 16505418 -167783244 - HAL1b LINE L1 -437 911 746 328 300 135 30 chr4 16505942 16506305 -167782357 - MLT1J2 LTR MaLR -2 448 48 478 271 112 52 chr4 16506557 16506598 -167782064 - HAL1 LINE L1 -1250 1257 1220 2186 166 84 7 chr4 16506598 16507026 -167781636 + LOR1b LTR ERV1 1 461 0 478 271 112 52 chr4 16507026 16507235 -167781427 - HAL1 LINE L1 -1287 1220 992 1686 144 93 0 chr4 16507275 16507545 -167781117 + AluSx SINE Alu 3 297 -15 5509 129 17 8 chr4 16507884 16508835 -167779827 - L1P LINE L1 -1527 4619 3661 4981 92 24 0 chr4 16508836 16509024 -167779638 + L1P LINE L1 4601 4783 -1363 402 21 0 0 chr4 16509024 16509071 -167779591 + (TA)n Simple_repeat Simple_repeat 1 47 0 4981 92 24 0 chr4 16509071 16509647 -167779015 + L1P LINE L1 4783 5383 -763 2851 74 11 0 chr4 16509656 16510036 -167778626 + L1PA8 LINE L1 5786 6169 -3 1632 233 105 49 chr4 16510036 16510683 -167777979 + MER21B LTR ERV1 74 760 -103 1566 237 56 48 chr4 16510837 16511064 -167777598 + MLT1D LTR MaLR 2 226 -279 2087 123 69 26 chr4 16511064 16511413 -167777249 - THE1B LTR MaLR 0 364 1 1566 237 56 48 chr4 16511413 16511683 -167776979 + MLT1D LTR MaLR 226 503 -2 530 360 42 25 chr4 16511694 16512094 -167776568 + L2 LINE L2 1963 2369 -945 2030 198 23 23 chr4 16512125 16512555 -167776107 - MSTB1 LTR MaLR 0 432 3 328 367 16 29 chr4 16512683 16512928 -167775734 + L2 LINE L2 2374 2615 -699 263 196 18 18 chr4 16513100 16513156 -167775506 - L2 LINE L2 -76 3237 3182 445 330 90 30 chr4 16513156 16513489 -167775173 + L2 LINE L2 2617 2969 -345 234 192 0 0 chr4 16513612 16513664 -167774998 + (TATATG)n Simple_repeat Simple_repeat 6 57 0 225 170 0 0 chr4 16513666 16513719 -167774943 + LTR66 LTR ERVL 394 446 -164 399 298 0 0 chr4 16513754 16513848 -167774814 + L2 LINE L2 3175 3268 -4 269 370 91 5 chr4 16515359 16515578 -167773084 - MIR SINE MIR -19 243 6 282 342 113 17 chr4 16515999 16516230 -167772432 - MIR SINE MIR 0 262 10 382 269 255 26 chr4 16516490 16516761 -167771901 - MLT1K LTR MaLR -113 475 143 317 283 40 79 chr4 16517305 16517369 -167771293 - MIR3 SINE MIR -25 183 118 2495 101 14 25 chr4 16517369 16517737 -167770925 + THE1B LTR MaLR 1 364 0 317 283 40 79 chr4 16517737 16517824 -167770838 - MIR3 SINE MIR -90 118 38 210 289 40 54 chr4 16518434 16518583 -167770079 + L3b LINE CR1 1246 1392 -191 199 349 82 20 chr4 16518624 16518770 -167769892 + MIR SINE MIR 48 202 -60 290 221 36 10 chr4 16519299 16519400 -167769262 - MER5A DNA MER1_type -55 134 15 337 247 52 0 chr4 16519790 16519887 -167768775 - MIR SINE MIR -98 164 63 203 133 22 0 chr4 16519923 16519968 -167768694 + CT-rich Low_complexity Low_complexity 2 47 0 695 227 0 0 chr4 16521169 16521297 -167767365 - FLAM_A SINE Alu -4 129 2 202 393 0 0 chr4 16521340 16521401 -167767261 + MIR SINE MIR 22 82 -180 572 277 27 38 chr4 16521406 16521590 -167767072 - MER20 DNA MER1_type -5 214 33 312 137 0 0 chr4 16522223 16522274 -167766388 + (A)n Simple_repeat Simple_repeat 1 51 0 227 232 91 30 chr4 16522703 16522802 -167765860 + L3 LINE CR1 1311 1415 -162 456 294 14 20 chr4 16522937 16523083 -167765579 + L3 LINE CR1 1426 1570 -7 477 356 49 31 chr4 16523266 16523491 -167765171 + MIR SINE MIR 2 230 -32 288 337 53 0 chr4 16524299 16524394 -167764268 - L2 LINE L2 -18 3254 3155 2382 71 0 0 chr4 16524603 16524897 -167763765 + AluY SINE Alu 1 294 -17 239 259 164 9 chr4 16525268 16525384 -167763278 - MLT1L LTR MaLR -332 283 150 2295 119 0 7 chr4 16526410 16526720 -167761942 + AluSx SINE Alu 1 308 -4 250 320 80 46 chr4 16527060 16527235 -167761427 + L3 LINE CR1 1395 1575 -2 1085 198 32 6 chr4 16528556 16528875 -167759787 + MER74C LTR ERVL 2 405 -153 310 289 141 6 chr4 16528946 16529102 -167759560 + L2 LINE L2 3120 3296 -17 229 265 78 20 chr4 16529559 16529661 -167759001 + L3 LINE CR1 1379 1486 -91 315 0 0 0 chr4 16531018 16531053 -167757609 + (CA)n Simple_repeat Simple_repeat 2 36 0 23 78 0 0 chr4 16531078 16531129 -167757533 + AT_rich Low_complexity Low_complexity 1 51 0 195 366 53 15 chr4 16531921 16532052 -167756610 + MER5B DNA MER1_type 13 148 -30 253 328 216 15 chr4 16532085 16532289 -167756373 + MIR SINE MIR 12 256 -6 261 83 0 0 chr4 16534421 16534457 -167754205 + (CA)n Simple_repeat Simple_repeat 2 37 0 387 290 84 26 chr4 16534893 16535048 -167753614 - MIR SINE MIR -79 183 20 993 288 36 0 chr4 16536615 16536865 -167751797 - MIR SINE MIR 0 262 4 317 316 14 21 chr4 16536968 16537122 -167751540 - MIR SINE MIR -62 146 19 221 240 40 0 chr4 16537757 16537807 -167750855 - MIR SINE MIR -123 139 88 696 271 111 33 chr4 16537807 16538113 -167750549 + MLT1J LTR MaLR 1 330 -181 430 242 0 48 chr4 16538248 16538372 -167750290 + MLT1J LTR MaLR 394 511 0 254 314 16 2 chr4 16538372 16538445 -167750217 - MIR SINE MIR -116 92 19 276 302 23 0 chr4 16539430 16539516 -167749146 - MIR SINE MIR 0 262 175 281 225 183 0 chr4 16539955 16540097 -167748565 - Charlie1 DNA MER1_type 0 2761 2594 3263 197 68 35 chr4 16540153 16541070 -167747592 - Charlie1 DNA MER1_type -258 2503 1557 2100 118 0 0 chr4 16541146 16541475 -167747187 - AluSx SINE Alu 0 331 3 2445 231 163 34 chr4 16541477 16541690 -167746972 - Charlie1 DNA MER1_type -1554 1207 1023 186 43 0 0 chr4 16541690 16541713 -167746949 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 470 189 94 9 chr4 16541715 16541821 -167746841 - FLAM_A SINE Alu -18 115 1 2445 231 163 34 chr4 16541821 16542632 -167746030 - Charlie1 DNA MER1_type -1738 1023 47 1834 193 62 24 chr4 16542733 16543183 -167745479 + MLT1C LTR MaLR 1 467 0 294 95 0 0 chr4 16544027 16544069 -167744593 + (T)n Simple_repeat Simple_repeat 1 42 0 2045 98 0 11 chr4 16545790 16546067 -167742595 - AluSx SINE Alu -38 274 1 372 257 0 46 chr4 16546067 16546176 -167742486 - MIR SINE MIR -116 146 43 214 269 51 13 chr4 16546249 16546327 -167742335 + MIR SINE MIR 56 136 -126 2231 123 3 0 chr4 16546377 16546678 -167741984 + AluSq SINE Alu 1 302 -11 2856 210 79 31 chr4 16547404 16548096 -167740566 - L1MC3 LINE L1 -1 7784 7127 231 88 0 0 chr4 16548096 16548130 -167740532 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 2856 210 79 31 chr4 16548130 16548316 -167740346 - L1MC3 LINE L1 -658 7127 6854 920 115 11 11 chr4 16548316 16548490 -167740172 + (TTCC)n Simple_repeat Simple_repeat 2 175 0 2856 210 79 31 chr4 16548490 16548556 -167740106 - L1MC3 LINE L1 -931 6854 6793 245 219 0 16 chr4 16548607 16548671 -167739991 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 25 0 0 0 chr4 16548945 16548970 -167739692 + AT_rich Low_complexity Low_complexity 1 25 0 333 357 51 26 chr4 16549001 16549250 -167739412 - MIR SINE MIR -4 258 6 2155 122 7 3 chr4 16549301 16549589 -167739073 - AluSg SINE Alu -21 289 1 3785 76 2 8 chr4 16549895 16550449 -167738213 + L1PA8 LINE L1 5623 6173 0 352 277 31 8 chr4 16550451 16550581 -167738081 - MLT2E LTR ERVL -486 142 10 203 83 28 28 chr4 16550707 16550743 -167737919 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 255 283 50 17 chr4 16550943 16551063 -167737599 + MLT1L LTR MaLR 370 493 -122 390 319 25 25 chr4 16552151 16552308 -167736354 + MLT1F1 LTR MaLR 1 157 -385 567 239 74 12 chr4 16552378 16552541 -167736121 - MLT1B LTR MaLR -217 173 1 * 1069 243 105 27 chr4 16552541 16552873 -167735789 + MLT1F1 LTR MaLR 209 566 -1 346 351 70 0 chr4 16553404 16553546 -167735116 - MIR SINE MIR -81 181 31 479 315 117 0 chr4 16554149 16554371 -167734291 - MIR SINE MIR -10 252 5 21 0 0 0 chr4 16554753 16554774 -167733888 + AT_rich Low_complexity Low_complexity 1 21 0 450 237 65 14 chr4 16554804 16554943 -167733719 - MIR SINE MIR -18 244 99 228 238 29 0 chr4 16555176 16555281 -167733381 + (TA)n Simple_repeat Simple_repeat 1 108 0 186 43 0 0 chr4 16555451 16555474 -167733188 + (TA)n Simple_repeat Simple_repeat 2 24 0 535 295 145 45 chr4 16555493 16555648 -167733014 - L1ME3A LINE L1 -220 5950 5812 230 0 33 0 chr4 16555648 16555678 -167732984 + (TA)n Simple_repeat Simple_repeat 2 32 0 535 295 145 45 chr4 16555678 16556054 -167732608 - L1ME3A LINE L1 -358 5812 5366 538 321 39 25 chr4 16556325 16556605 -167732057 - L2 LINE L2 -2313 1001 718 415 265 45 53 chr4 16556681 16556813 -167731849 + L2 LINE L2 3142 3272 0 * 608 327 90 46 chr4 16556809 16557243 -167731419 - L2 LINE L2 -2636 678 226 583 329 68 30 chr4 16557246 16557720 -167730942 - LTR33 LTR ERVL -7 514 23 186 226 57 38 chr4 16558732 16558785 -167729877 + MIR SINE MIR 122 175 -87 276 360 9 0 chr4 16559349 16559460 -167729202 + MIR SINE MIR 151 262 0 269 331 167 36 chr4 16560864 16561278 -167727384 - L2 LINE L2 -907 2407 1940 282 341 170 4 chr4 16561297 16561567 -167727095 + L3 LINE CR1 1150 1464 -113 27 87 0 0 chr4 16562368 16562437 -167726225 + AT_rich Low_complexity Low_complexity 1 69 0 25 0 0 0 chr4 16562779 16562804 -167725858 + AT_rich Low_complexity Low_complexity 1 25 0 2262 138 0 0 chr4 16563019 16563331 -167725331 + AluSx SINE Alu 1 312 0 211 290 0 0 chr4 16563358 16563427 -167725235 + (TA)n Simple_repeat Simple_repeat 1 69 0 1394 229 49 9 chr4 16563498 16563848 -167724814 + MLT1A1 LTR MaLR 1 364 -1 2436 242 48 10 chr4 16563851 16564479 -167724183 + MLT1A1-int LTR MaLR 9 660 -1075 1930 225 12 9 chr4 16564857 16565283 -167723379 + MLT1A1-int LTR MaLR 1309 1735 0 1302 195 19 39 chr4 16565283 16565590 -167723072 + MLT1A1 LTR MaLR 1 301 -64 343 359 26 0 chr4 16565648 16565765 -167722897 + L2 LINE L2 3147 3266 -6 227 204 0 23 chr4 16566946 16566990 -167721672 - L2 LINE L2 -3 3310 3268 275 122 20 0 chr4 16568663 16568712 -167719950 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 1543 246 66 25 chr4 16568712 16569152 -167719510 - MLT2B1 LTR ERVL -62 458 1 284 359 55 39 chr4 16569268 16569703 -167718959 + L2 LINE L2 2805 3246 -67 356 330 69 67 chr4 16569740 16570101 -167718561 + L2 LINE L2 2911 3272 0 460 279 66 66 chr4 16571669 16571913 -167716749 - MIR SINE MIR -4 258 15 248 213 49 16 chr4 16571923 16571984 -167716678 - MIR3 SINE MIR -37 171 109 1698 192 15 52 chr4 16572307 16572708 -167715954 - MLT1B LTR MaLR -4 386 1 1937 106 20 0 chr4 16572769 16573062 -167715600 + L1MA2 LINE L1 6006 6304 0 23 68 0 0 chr4 16573672 16573716 -167714946 + AT_rich Low_complexity Low_complexity 1 44 0 186 316 13 38 chr4 16573757 16573836 -167714826 - MIR SINE MIR -89 173 97 592 224 189 5 chr4 16573854 16574055 -167714607 - MER5C DNA MER1_type -1 323 86 255 31 0 0 chr4 16574102 16574134 -167714528 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 420 226 73 8 chr4 16574532 16574656 -167714006 - MER94 DNA DNA 0 134 3 272 347 89 37 chr4 16575212 16575402 -167713260 + L2 LINE L2 2569 2768 -546 268 229 14 0 chr4 16575515 16575585 -167713077 - MER116 DNA Mariner -8 72 2 568 311 44 22 chr4 16575678 16575906 -167712756 - L2 LINE L2 0 3313 3081 254 255 102 31 chr4 16576145 16576243 -167712419 + MIR SINE MIR 112 216 -46 210 282 196 49 chr4 16576389 16576552 -167712110 - L2 LINE L2 -2 3311 3125 409 359 151 9 chr4 16577869 16577901 -167710761 + L2 LINE L2 2260 2286 -1028 2080 116 78 29 chr4 16577901 16578246 -167710416 - THE1B LTR MaLR -2 362 1 409 359 151 9 chr4 16578246 16578664 -167709998 + L2 LINE L2 2286 2774 -540 1608 199 69 62 chr4 16579111 16579559 -167709103 + MLT2B1 LTR ERVL 1 451 -69 182 37 37 0 chr4 16580033 16580060 -167708602 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2285 75 0 30 chr4 16580172 16580477 -167708185 - AluY SINE Alu -15 296 1 542 311 96 34 chr4 16580512 16580898 -167707764 - LTR16C LTR ERVL 0 491 82 277 330 127 41 chr4 16581329 16581526 -167707136 - MIR SINE MIR -1 261 48 480 366 42 28 chr4 16581710 16582139 -167706523 - L3 LINE CR1 -69 1508 1074 211 319 89 30 chr4 16582284 16582453 -167706209 - MIR3 SINE MIR -6 202 24 181 308 19 0 chr4 16582796 16582848 -167705814 + MIR SINE MIR 3 55 -207 356 274 19 19 chr4 16582878 16582984 -167705678 + MIR SINE MIR 49 154 -108 209 234 44 29 chr4 16583016 16583153 -167705509 + (TTATA)n Simple_repeat Simple_repeat 1 139 0 357 109 0 0 chr4 16583317 16583372 -167705290 + (CAT)n Simple_repeat Simple_repeat 3 57 0 183 279 70 109 chr4 16583390 16583619 -167705043 + L2 LINE L2 1321 1540 -1774 1472 219 52 52 chr4 16583765 16584285 -167704377 - MLT1D-int LTR MaLR -760 611 1 1599 230 100 25 chr4 16584285 16584755 -167703907 - MLT1D LTR MaLR 0 505 1 40768 34 21 1 chr4 16584777 16590802 -167697860 - L1PA3 LINE L1 0 6155 7 210 360 130 33 chr4 16591800 16592222 -167696440 - L2 LINE L2 -377 2937 2475 278 150 0 17 chr4 16592527 16592587 -167696075 + (GAAA)n Simple_repeat Simple_repeat 3 61 0 224 322 35 35 chr4 16592787 16592874 -167695788 + MIR SINE MIR 27 113 -149 468 303 67 71 chr4 16593047 16593496 -167695166 - L1M4 LINE L1 -2346 3800 3354 501 271 92 39 chr4 16594057 16594341 -167694321 - MLT1K LTR MaLR -162 426 128 513 191 0 0 chr4 16594499 16594604 -167694058 + (CA)n Simple_repeat Simple_repeat 2 106 0 939 210 75 45 chr4 16594605 16594938 -167693724 + MER2 DNA MER2_type 2 344 0 288 91 0 0 chr4 16594946 16594990 -167693672 + (TG)n Simple_repeat Simple_repeat 1 44 0 21 0 0 0 chr4 16595173 16595194 -167693468 + AT_rich Low_complexity Low_complexity 1 21 0 374 274 126 39 chr4 16595251 16595447 -167693215 + MIR SINE MIR 36 255 -7 231 306 89 8 chr4 16598484 16598608 -167690054 + MIR SINE MIR 15 148 -114 278 318 23 102 chr4 16598967 16599143 -167689519 - MIR SINE MIR -69 193 32 463 183 54 11 chr4 16599793 16599886 -167688776 - L2 LINE L2 -4 3268 3172 433 236 99 19 chr4 16599886 16600047 -167688615 - MER117 DNA MER1_type 0 197 24 2006 145 0 0 chr4 16600239 16600574 -167688088 + AluSx SINE Alu 1 335 0 301 286 0 0 chr4 16602114 16602191 -167686471 - MIR SINE MIR -25 237 161 1288 216 69 49 chr4 16602196 16602644 -167686018 - MLT1C LTR MaLR -2 465 9 262 330 11 0 chr4 16602686 16602777 -167685885 - MIR SINE MIR -154 108 17 369 289 131 56 chr4 16602948 16603321 -167685341 + LTR16A1 LTR ERVL 1 401 -56 409 310 30 42 chr4 16603379 16603584 -167685078 - MIR SINE MIR -36 172 3 2171 102 17 3 chr4 16603709 16603881 -167684781 - AluSp SINE Alu -14 299 120 468 0 0 0 chr4 16603881 16603933 -167684729 + (TTA)n Simple_repeat Simple_repeat 2 53 0 2171 102 17 3 chr4 16603933 16604055 -167684607 - AluSp SINE Alu -193 120 1 235 286 0 0 chr4 16604599 16604648 -167684014 + (TG)n Simple_repeat Simple_repeat 1 49 0 339 293 65 126 chr4 16604830 16605124 -167683538 + L2 LINE L2 2910 3185 -87 217 219 158 12 chr4 16605219 16605301 -167683361 + MIR SINE MIR 103 196 -66 248 267 50 33 chr4 16605352 16605472 -167683190 + MLT1F LTR MaLR 136 257 -292 294 168 36 93 chr4 16605617 16605724 -167682938 + MLT1F LTR MaLR 443 541 -1 206 243 29 29 chr4 16605728 16605798 -167682864 + MIR SINE MIR 161 230 -32 340 308 131 37 chr4 16606260 16606643 -167682019 + L2 LINE L2 2225 2643 -671 250 231 0 0 chr4 16606719 16606771 -167681891 + (TG)n Simple_repeat Simple_repeat 1 52 0 2690 107 0 6 chr4 16606943 16607308 -167681354 - THE1B LTR MaLR -1 363 1 1941 153 0 0 chr4 16607491 16607794 -167680868 + AluSx SINE Alu 3 305 0 225 236 14 42 chr4 16608005 16608077 -167680585 + MIR SINE MIR 130 199 -63 2165 182 23 14 chr4 16609858 16610286 -167678376 - MSTB1 LTR MaLR 0 432 1 306 293 96 27 chr4 16610364 16610552 -167678110 + MIR SINE MIR 32 232 -30 194 296 43 26 chr4 16610544 16610659 -167678003 - MIR SINE MIR -21 241 125 * 238 162 38 36 chr4 16611152 16611399 -167677263 + (TA)n Simple_repeat Simple_repeat 1 247 0 979 221 19 5 chr4 16611764 16611977 -167676685 - MER20 DNA MER1_type 0 219 4 282 287 103 52 chr4 16612042 16612216 -167676446 - MER58A DNA MER1_type -15 209 27 307 242 68 60 chr4 16612409 16612504 -167676158 - L1ME4a LINE L1 -195 5926 5833 2428 95 0 0 chr4 16612504 16612809 -167675853 - AluY SINE Alu -6 305 1 307 242 68 60 chr4 16612809 16613080 -167675582 - L1ME4a LINE L1 -288 5833 5535 288 77 0 0 chr4 16614008 16614047 -167674615 + (TG)n Simple_repeat Simple_repeat 2 40 0 259 241 0 11 chr4 16614047 16614134 -167674528 + (TA)n Simple_repeat Simple_repeat 2 87 0 222 116 0 0 chr4 16614143 16614186 -167674476 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 390 317 23 75 chr4 16614596 16614861 -167673801 + L2 LINE L2 3023 3273 -40 2534 236 32 5 chr4 16614971 16615586 -167673076 + MER73 LTR ERVL 13 644 0 206 266 53 80 chr4 16615744 16615857 -167672805 - MIR SINE MIR -67 195 86 290 304 35 17 chr4 16616846 16616961 -167671701 - MIR3 SINE MIR -81 127 11 1299 198 132 118 chr4 16617037 16617584 -167671078 + LTR28 LTR ERV1 1 620 -277 2870 24 0 3 chr4 16617584 16617951 -167670711 + L1PA2 LINE L1 5810 6175 0 1299 198 132 118 chr4 16617951 16618151 -167670511 + LTR28 LTR ERV1 620 816 -81 435 261 25 8 chr4 16618230 16618349 -167670313 + LTR28 LTR ERV1 900 1020 0 1654 155 146 6 chr4 16618468 16618810 -167669852 - MLT1B LTR MaLR 0 390 1 337 244 85 21 chr4 16618950 16619092 -167669570 - MIR SINE MIR -37 171 20 216 277 106 0 chr4 16619407 16619501 -167669161 + MIR SINE MIR 158 261 -1 285 151 0 0 chr4 16619617 16619670 -167668992 + (TG)n Simple_repeat Simple_repeat 2 54 0 429 371 17 11 chr4 16619799 16619977 -167668685 - L3 LINE CR1 -5 1572 1394 265 288 34 34 chr4 16619996 16620114 -167668548 - MIR SINE MIR -10 252 135 845 251 64 0 chr4 16620127 16620330 -167668332 - MIR SINE MIR -24 238 23 285 276 15 104 chr4 16620356 16620490 -167668172 - MIR SINE MIR -112 150 29 245 234 52 0 chr4 16620913 16620990 -167667672 + L1MC4 LINE L1 6618 6698 -1344 448 322 97 26 chr4 16621032 16621414 -167667248 - L1 LINE L1 -1354 4792 4384 237 24 71 0 chr4 16621701 16621743 -167666919 + (TA)n Simple_repeat Simple_repeat 2 46 0 263 167 15 0 chr4 16621772 16621838 -167666824 + (TA)n Simple_repeat Simple_repeat 1 67 0 268 284 37 18 chr4 16622106 16622215 -167666447 - MLT1I LTR MaLR -54 355 245 2213 102 3 0 chr4 16623195 16623488 -167665174 + AluSx SINE Alu 1 294 -18 300 313 109 30 chr4 16623808 16624351 -167664311 + HAL1b LINE L1 39 624 -724 1516 234 133 54 chr4 16624671 16625662 -167663000 + L1MC5 LINE L1 6476 7531 -430 362 316 61 31 chr4 16625744 16625940 -167662722 + L1ME3A LINE L1 5962 6163 -7 24 32 0 0 chr4 16626140 16626171 -167662491 + AT_rich Low_complexity Low_complexity 1 31 0 2177 123 0 0 chr4 16626180 16626473 -167662189 + AluSg SINE Alu 1 293 -17 319 326 0 0 chr4 16626492 16626581 -167662081 + L1MC4 LINE L1 6615 6703 -1339 305 333 0 0 chr4 16626527 16626617 -167662045 - L1MC4 LINE L1 -1339 6703 6614 * 545 176 0 17 chr4 16626624 16626743 -167661919 + (TATG)n Simple_repeat Simple_repeat 2 118 0 2123 127 0 0 chr4 16626999 16627291 -167661371 - AluSx SINE Alu -20 292 1 218 250 0 0 chr4 16627448 16627500 -167661162 - L2 LINE L2 -14 3299 3248 196 376 123 19 chr4 16627629 16627791 -167660871 + L2 LINE L2 2595 2773 -541 884 297 125 55 chr4 16628221 16629249 -167659413 - L2 LINE L2 0 3313 2208 534 333 187 21 chr4 16629607 16630180 -167658482 - L2 LINE L2 -1117 2197 1530 569 100 0 0 chr4 16630413 16630493 -167658169 - MADE1 DNA Mariner 0 80 1 521 323 56 10 chr4 16630550 16630745 -167657917 - MIR SINE MIR -41 221 18 1013 175 0 0 chr4 16630919 16631079 -167657583 + AluJb SINE Alu 1 160 -152 601 223 0 16 chr4 16631278 16631399 -167657263 + AluJb SINE Alu 173 291 -21 558 234 48 14 chr4 16631412 16631621 -167657041 + L1MC5 LINE L1 6976 7191 -770 388 320 39 54 chr4 16631647 16631906 -167656756 - MLT1L LTR MaLR -356 259 5 227 337 232 23 chr4 16632485 16632791 -167655871 - L2 LINE L2 0 3272 2903 2074 242 101 21 chr4 16633679 16634279 -167654383 + L1ME1 LINE L1 1007 1705 -4835 233 57 29 0 chr4 16634279 16634314 -167654348 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 2074 242 101 21 chr4 16634314 16634638 -167654024 + L1ME1 LINE L1 1705 2002 -4538 1036 215 57 73 chr4 16634672 16635221 -167653441 + L1ME1 LINE L1 2724 3263 -3277 2322 100 0 6 chr4 16635221 16635532 -167653130 + AluSc SINE Alu 1 309 0 1626 204 21 104 chr4 16635570 16635751 -167652911 - L1MA8 LINE L1 -21 6270 6075 1773 181 48 0 chr4 16635751 16636082 -167652580 + MER7A DNA MER2_type 2 346 0 1626 204 21 104 chr4 16636082 16636354 -167652308 - L1MA8 LINE L1 -216 6075 5890 2065 85 53 14 chr4 16636354 16636637 -167652025 - AluY SINE Alu -17 294 1 1626 204 21 104 chr4 16636637 16636863 -167651799 - L1MA8 LINE L1 -401 5890 5647 * 2067 248 55 41 chr4 16636857 16637237 -167651425 + L1ME1 LINE L1 3284 3657 -2883 1176 155 22 9 chr4 16637237 16637463 -167651199 + L1MA2 LINE L1 6063 6291 -13 2067 248 55 41 chr4 16637463 16638218 -167650444 + L1ME1 LINE L1 3657 4434 -2106 2357 244 30 51 chr4 16638253 16639393 -167649269 + L1ME1 LINE L1 5084 6182 -378 2476 100 47 3 chr4 16639393 16639752 -167648910 + THE1C LTR MaLR 1 375 0 2357 244 30 51 chr4 16639752 16640067 -167648595 + L1ME1 LINE L1 6182 6502 -58 827 200 0 0 chr4 16640085 16640230 -167648432 + FRAM SINE Alu 6 150 -26 238 314 0 0 chr4 16640880 16640950 -167647712 - L2 LINE L2 0 3272 3203 653 277 18 79 chr4 16641129 16641407 -167647255 + MIR SINE MIR 2 262 0 194 289 0 113 chr4 16641564 16641661 -167647001 + MIR3 SINE MIR 109 194 -14 2564 281 103 66 chr4 16642117 16642951 -167645711 - HAL1 LINE L1 0 2507 1705 1475 146 29 36 chr4 16642951 16643226 -167645436 - AluJb SINE Alu -19 293 21 2564 281 103 66 chr4 16643226 16644750 -167643912 - HAL1 LINE L1 -802 1705 62 246 291 45 60 chr4 16645038 16645172 -167643490 - MIR SINE MIR -13 249 118 345 308 11 0 chr4 16645422 16645513 -167643149 + MIR3 SINE MIR 74 165 -43 21 0 0 0 chr4 16646034 16646055 -167642607 + AT_rich Low_complexity Low_complexity 1 21 0 314 278 10 21 chr4 16646115 16646212 -167642450 - MIR3 SINE MIR -23 185 90 514 328 87 0 chr4 16646604 16646799 -167641863 - MIR SINE MIR -31 231 20 245 335 34 62 chr4 16647416 16647595 -167641067 + MIR SINE MIR 86 259 -3 211 226 65 48 chr4 16648688 16648750 -167639912 - L2 LINE L2 -2 3270 3208 867 218 38 114 chr4 16648767 16649060 -167639602 - MLT1B LTR MaLR 0 390 139 2679 33 0 3 chr4 16649060 16649367 -167639295 - AluY SINE Alu -5 306 1 867 218 38 114 chr4 16649367 16649489 -167639173 - MLT1B LTR MaLR -251 139 9 758 172 43 27 chr4 16649586 16649772 -167638890 - MER53 DNA DNA 0 189 1 1621 202 5 68 chr4 16650026 16650437 -167638225 + MLT1B LTR MaLR 6 390 0 1071 193 30 44 chr4 16650683 16650790 -167637872 - LTR37A LTR ERV1 -134 292 185 2142 161 28 3 chr4 16650790 16651145 -167637517 + MLT1A1 LTR MaLR 2 365 0 1071 193 30 44 chr4 16651145 16651333 -167637329 - LTR37A LTR ERV1 -241 185 1 190 313 114 8 chr4 16651508 16651639 -167637023 - MIR3 SINE MIR -3 205 61 1745 177 0 11 chr4 16651728 16652011 -167636651 - AluJb SINE Alu -30 282 3 2066 140 0 13 chr4 16652048 16652356 -167636306 - AluSx SINE Alu -8 304 1 251 270 0 40 chr4 16652773 16652847 -167635815 + L2 LINE L2 3200 3270 -2 6279 31 1 4 chr4 16652901 16653645 -167635017 - L1PA7 LINE L1 -11 6143 5402 2669 101 28 0 chr4 16653645 16654032 -167634630 + L1P LINE L1 2216 2613 -3533 22 35 0 0 chr4 16654388 16654417 -167634245 + AT_rich Low_complexity Low_complexity 1 29 0 316 283 139 27 chr4 16654553 16654740 -167633922 - MIR SINE MIR -42 220 13 191 260 130 13 chr4 16655013 16655090 -167633572 - MIR SINE MIR -57 205 120 647 304 77 5 chr4 16655121 16655341 -167633321 - MIR SINE MIR -5 257 22 281 260 39 87 chr4 16655350 16655454 -167633208 - MIR SINE MIR -144 118 20 282 300 0 0 chr4 16655526 16655596 -167633066 + MIR SINE MIR 81 150 -112 917 216 0 26 chr4 16655598 16655852 -167632810 + MLT1A1 LTR MaLR 1 315 -59 2189 126 0 0 chr4 16655859 16656152 -167632510 + AluSg SINE Alu 7 299 -11 667 87 0 0 chr4 16656319 16656411 -167632251 + AluSg/x SINE Alu 219 310 0 383 344 11 50 chr4 16658006 16658186 -167630476 - MIR SINE MIR -70 192 20 1237 231 29 41 chr4 16658242 16658448 -167630214 + MLT1A1 LTR MaLR 3 224 -150 1933 102 4 0 chr4 16658448 16658702 -167629960 + AluSc SINE Alu 55 309 0 1237 231 29 41 chr4 16658702 16658852 -167629810 + MLT1A1 LTR MaLR 224 374 0 186 343 59 20 chr4 16658909 16659011 -167629651 - L2 LINE L2 -11 3261 3156 877 178 0 35 chr4 16659017 16659074 -167629588 - MER3 DNA MER1_type 0 209 152 1542 146 59 150 chr4 16659074 16659320 -167629342 - Tigger2a DNA MER2_type -2275 433 249 2254 135 0 0 chr4 16659320 16659632 -167629030 + AluSx SINE Alu 1 312 0 1542 146 59 150 chr4 16659632 16659859 -167628803 - Tigger2a DNA MER2_type -2459 249 3 877 178 0 35 chr4 16659859 16659970 -167628692 - MER3 DNA MER1_type -57 152 47 1728 323 125 30 chr4 16660147 16660699 -167627963 - L2 LINE L2 -3 3310 2812 1975 123 91 26 chr4 16660699 16661041 -167627621 + THE1B LTR MaLR 1 364 0 11528 94 9 1 chr4 16661043 16662608 -167626054 + THE1B-int LTR MaLR 3 1579 -1 1892 117 99 38 chr4 16662609 16662952 -167625710 + THE1B LTR MaLR 1 364 0 1728 323 125 30 chr4 16662952 16663822 -167624840 - L2 LINE L2 -500 2813 1744 733 230 42 5 chr4 16663830 16664043 -167624619 - MER33 DNA MER1_type -103 221 1 1764 141 120 20 chr4 16664860 16665177 -167623485 - THE1C LTR MaLR 0 375 20 2597 89 104 7 chr4 16665177 16665582 -167623080 - MLT2A1 LTR ERVL 0 444 1 1764 141 120 20 chr4 16665582 16665605 -167623057 - THE1C LTR MaLR -355 20 1 3489 239 59 15 chr4 16666290 16666682 -167621980 + L1MC4 LINE L1 6462 6835 -1207 1426 186 71 29 chr4 16666682 16667032 -167621630 - MLT1A1 LTR MaLR 0 365 1 3489 239 59 15 chr4 16667032 16667636 -167621026 + L1MC4 LINE L1 6835 7502 -540 409 240 80 108 chr4 16667636 16667923 -167620739 + L1MC4 LINE L1 7753 8031 -11 1764 107 0 34 chr4 16668727 16669044 -167619618 + AluSx SINE Alu 37 344 0 26 0 0 0 chr4 16669523 16669549 -167619113 + AT_rich Low_complexity Low_complexity 1 26 0 184 378 51 0 chr4 16669743 16669841 -167618821 - MIR SINE MIR -34 228 126 366 222 22 0 chr4 16669883 16669973 -167618689 - MER57A LTR ERV1 -77 326 235 282 240 128 16 chr4 16670011 16670136 -167618526 - MER57B LTR ERV1 -293 141 3 774 200 0 26 chr4 16670138 16670293 -167618369 - MER57B-int LTR ERV1 0 7537 7387 630 187 24 8 chr4 16670473 16670596 -167618066 - LTR54B LTR ERV1 -366 132 8 4192 214 20 20 chr4 16670598 16671544 -167617118 - MER57B-int LTR ERV1 -392 7145 6200 993 214 23 26 chr4 16671899 16672217 -167616445 - MER57A-int LTR ERV1 -771 6204 3954 3081 213 68 74 chr4 16672709 16674150 -167614512 - MER57A-int LTR ERV1 -1716 5821 2464 717 218 90 72 chr4 16674132 16674481 -167614181 - MER57A-int LTR ERV1 -2385 3561 2364 * 449 242 11 76 chr4 16674489 16674673 -167613989 - MER57A-int LTR ERV1 -3028 2095 1549 1398 193 54 33 chr4 16674688 16675053 -167613609 + MSTB1 LTR MaLR 1 396 0 812 272 66 21 chr4 16675239 16675526 -167613136 - MER57A-int LTR ERV1 -2291 4467 4168 724 277 28 24 chr4 16675607 16675860 -167612802 - MER34C LTR ERV1 -177 408 155 2861 237 23 66 chr4 16676069 16676969 -167611693 - MER57A-int LTR ERV1 -6673 864 3 2104 114 0 0 chr4 16676999 16677324 -167611338 - AluSg SINE Alu 0 325 1 700 215 134 8 chr4 16677324 16677629 -167611033 - MER57A LTR ERV1 -28 375 1 308 374 0 4 chr4 16677630 16677734 -167610928 - MIR SINE MIR -93 115 14 240 245 0 19 chr4 16678660 16678713 -167609949 - MIR SINE MIR -152 110 59 226 343 173 26 chr4 16678799 16679105 -167609557 + L2 LINE L2 308 658 -2656 244 309 0 0 chr4 16679222 16679303 -167609359 + L1ME LINE L1 927 1007 -5940 319 371 86 43 chr4 16679655 16679911 -167608751 + L1ME LINE L1 1135 1401 -5546 246 277 0 50 chr4 16679926 16680027 -167608635 + L1ME LINE L1 1372 1467 -5480 360 291 0 102 chr4 16680028 16680234 -167608428 + L1ME LINE L1 1341 1525 -5334 2675 212 6 39 chr4 16680234 16680905 -167607757 - L1 LINE L1 -1455 4691 4043 * 3072 209 7 13 chr4 16680902 16681609 -167607053 + L1P LINE L1 4670 5372 -774 479 179 38 0 chr4 16681988 16682094 -167606568 + L1PA16 LINE L1 4951 5060 -1086 * 4495 148 22 9 chr4 16682088 16682856 -167605806 + L1PA16 LINE L1 5389 6166 0 358 297 69 12 chr4 16682872 16683049 -167605613 - L1M4 LINE L1 -712 5454 5262 1194 186 49 40 chr4 16683071 16683318 -167605344 - AluJo SINE Alu -9 303 55 248 239 37 18 chr4 16683535 16683644 -167605018 - L1M4 LINE L1 -1112 5034 4924 2849 88 26 0 chr4 16684549 16684967 -167603695 + L1P LINE L1 4881 5309 -837 534 31 0 0 chr4 16684967 16685031 -167603631 + (TTTC)n Simple_repeat Simple_repeat 2 65 0 1596 180 22 30 chr4 16685031 16685393 -167603269 - L1MA8 LINE L1 -4 6287 5929 263 211 35 0 chr4 16685393 16685450 -167603212 + MLT1H LTR MaLR 489 547 -2 298 276 22 120 chr4 16685451 16685676 -167602986 - MIR SINE MIR -20 242 40 297 373 30 15 chr4 16686152 16686286 -167602376 + MIR3 SINE MIR 11 146 -62 212 280 149 28 chr4 16686325 16686432 -167602230 - L2 LINE L2 0 3272 3153 2424 159 0 13 chr4 16686503 16687053 -167601609 + L1P4 LINE L1 5105 5648 -518 2196 157 73 13 chr4 16687055 16687451 -167601211 + MSTB LTR MaLR 1 420 -6 1682 136 3 71 chr4 16687478 16687801 -167600861 - LTR62 LTR ERVK -418 301 1 26 0 0 0 chr4 16687920 16687946 -167600716 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr4 16688068 16688103 -167600559 + AT_rich Low_complexity Low_complexity 1 35 0 274 250 0 83 chr4 16688266 16688386 -167600276 - MIR SINE MIR 0 262 153 1985 130 10 3 chr4 16688527 16688819 -167599843 + AluSc SINE Alu 1 294 -15 2864 194 43 19 chr4 16689114 16689747 -167598915 + L1MB7 LINE L1 5528 6175 -9 300 254 46 69 chr4 16690061 16690191 -167598471 + L1MC4 LINE L1 6585 6711 -1331 1209 168 29 5 chr4 16690509 16690718 -167597944 - AluJb SINE Alu -13 299 86 2765 13 0 3 chr4 16690729 16691036 -167597626 - AluYb8 SINE Alu -12 306 1 2140 142 9 3 chr4 16694033 16694378 -167594284 - L1PA15 LINE L1 -2 6163 5817 1188 192 76 139 chr4 16694556 16694951 -167593711 - MLT1E LTR MaLR -223 370 1 322 222 61 40 chr4 16694951 16695033 -167593629 + MLT1H LTR MaLR 113 196 -353 222 354 85 15 chr4 16695741 16695871 -167592791 + MIR SINE MIR 118 256 -6 226 321 12 12 chr4 16697209 16697293 -167591369 + MIR3 SINE MIR 114 197 -11 267 79 0 0 chr4 16697806 16697844 -167590818 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 319 325 24 32 chr4 16697845 16697968 -167590694 - L2 LINE L2 -12 3260 3139 1951 114 0 14 chr4 16698230 16698365 -167590297 + AluSp SINE Alu 1 136 -177 2567 58 0 3 chr4 16698365 16698677 -167589985 + AluY SINE Alu 1 311 0 1951 114 0 14 chr4 16698677 16698762 -167589900 + AluSp SINE Alu 136 276 -37 376 119 0 0 chr4 16698762 16698821 -167589841 + AluSp/q SINE Alu 218 276 -27 214 319 190 9 chr4 16699203 16699319 -167589343 + L2 LINE L2 3117 3253 -19 232 264 44 44 chr4 16699356 16699447 -167589215 + MIR SINE MIR 104 194 -68 34 24 0 0 chr4 16699489 16699530 -167589132 + AT_rich Low_complexity Low_complexity 1 41 0 876 338 108 21 chr4 16699534 16700022 -167588640 + L2 LINE L2 2219 2663 -650 5705 63 0 4 chr4 16700022 16700748 -167587914 + L1PA7 LINE L1 5432 6154 0 876 338 108 21 chr4 16700748 16701215 -167587447 + L2 LINE L2 2663 3253 -60 1670 304 90 27 chr4 16701219 16702327 -167586335 - L2 LINE L2 -1 3312 2143 354 83 0 0 chr4 16702327 16702375 -167586287 + Alu SINE Alu 2 49 -253 365 287 17 9 chr4 16702671 16702786 -167585876 + MLT1C LTR MaLR 19 134 -333 338 44 0 0 chr4 16702782 16702827 -167585835 - U5 snRNA snRNA -68 48 4 * 939 227 63 39 chr4 16702836 16703171 -167585491 + MLT1C LTR MaLR 125 467 0 447 349 99 49 chr4 16703377 16704076 -167584586 + L2 LINE L2 1998 2731 -583 238 338 51 25 chr4 16704415 16704572 -167584090 + L2 LINE L2 3123 3283 -30 209 273 0 0 chr4 16704576 16704631 -167584031 + (TGAA)n Simple_repeat Simple_repeat 3 57 0 187 250 0 0 chr4 16704958 16705002 -167583660 + MIR SINE MIR 83 126 -82 615 114 72 0 chr4 16705042 16705208 -167583454 + (TA)n Simple_repeat Simple_repeat 1 178 0 382 271 93 0 chr4 16705228 16705346 -167583316 - MIR SINE MIR -125 137 9 25 0 0 0 chr4 16706264 16706289 -167582373 + AT_rich Low_complexity Low_complexity 1 25 0 3271 87 2 9 chr4 16706920 16707371 -167581291 - L1PA10 LINE L1 -11 6157 5710 338 284 39 10 chr4 16707786 16707888 -167580774 - L2 LINE L2 -10 3303 3199 771 134 0 0 chr4 16708413 16708532 -167580130 - L1PA14 LINE L1 -536 5625 5507 3233 125 0 14 chr4 16708534 16709045 -167579617 + L1PA14 LINE L1 5653 6156 -5 1023 208 55 97 chr4 16709080 16709151 -167579511 + MLT1A2 LTR MaLR 13 85 -289 1422 375 106 11 chr4 16709151 16709560 -167579102 + MLT2B2 LTR ERVL 1 462 -53 225 0 0 0 chr4 16709560 16709585 -167579077 + (TATG)n Simple_repeat Simple_repeat 4 28 0 1422 375 106 11 chr4 16709585 16709645 -167579017 + MLT2B2 LTR ERVL 462 515 0 1023 208 55 97 chr4 16709645 16709934 -167578728 + MLT1A2 LTR MaLR 85 358 -16 355 278 78 78 chr4 16710487 16710705 -167577957 + MLT1J LTR MaLR 241 461 -50 2053 142 3 3 chr4 16710705 16711008 -167577654 - AluSq SINE Alu -10 303 1 355 278 78 78 chr4 16711008 16711059 -167577603 + MLT1J LTR MaLR 460 510 -1 261 83 0 0 chr4 16711431 16711467 -167577195 + (T)n Simple_repeat Simple_repeat 1 36 0 200 111 19 74 chr4 16711554 16711575 -167577087 + (TAAAAA)n Simple_repeat Simple_repeat 4 25 -29 1848 123 0 90 chr4 16711575 16711885 -167576777 + AluSg SINE Alu 3 284 -26 200 111 19 74 chr4 16711885 16711917 -167576745 + (TAAAAA)n Simple_repeat Simple_repeat 25 54 0 27 29 0 0 chr4 16711950 16711984 -167576678 + AT_rich Low_complexity Low_complexity 1 34 0 613 171 0 4 chr4 16712397 16712610 -167576052 + AluJo SINE Alu 11 296 -16 867 241 80 19 chr4 16712874 16713198 -167575464 - MER2 DNA MER2_type 0 344 1 2367 214 47 43 chr4 16713341 16713985 -167574677 + MER82 DNA MER2_type 8 653 0 1200 189 11 70 chr4 16714334 16714427 -167574235 + AluSp SINE Alu 45 142 -171 1112 262 0 3 chr4 16714427 16714725 -167573937 + AluY SINE Alu 5 301 0 1200 189 11 70 chr4 16714725 16714917 -167573745 + AluSp SINE Alu 142 313 0 316 389 107 21 chr4 16714930 16715267 -167573395 - L2 LINE L2 -480 2834 2469 21 36 0 0 chr4 16715577 16715605 -167573057 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr4 16716246 16716271 -167572391 + AT_rich Low_complexity Low_complexity 1 25 0 2541 71 0 0 chr4 16716324 16716634 -167572028 - AluY SINE Alu -1 310 1 414 335 104 45 chr4 16717665 16717888 -167570774 + L1MC4a LINE L1 5414 5622 -2186 1764 153 49 0 chr4 16717888 16718204 -167570458 - AluSx SINE Alu 0 312 1 414 335 104 45 chr4 16718204 16718449 -167570213 + L1MC4a LINE L1 5622 5910 -1898 2014 144 131 8 chr4 16718453 16718834 -167569828 - MSTA LTR MaLR 0 428 1 2128 176 15 2 chr4 16718837 16719230 -167569432 - MSTA-int LTR MaLR -2 1649 1252 22 56 0 0 chr4 16719366 16719402 -167569260 + AT_rich Low_complexity Low_complexity 1 36 0 1946 104 4 0 chr4 16719888 16720168 -167568494 - L1PA8 LINE L1 -56 6116 5836 361 100 0 0 chr4 16720168 16720223 -167568439 + L1PA8 LINE L1 6113 6172 0 1033 295 108 16 chr4 16720232 16720676 -167567986 - MLT1H LTR MaLR -64 485 1 29 28 0 0 chr4 16720776 16720812 -167567850 + AT_rich Low_complexity Low_complexity 1 36 0 564 267 0 0 chr4 16720814 16720934 -167567728 - FLAM_A SINE Alu -13 120 1 873 300 83 127 chr4 16721237 16722252 -167566410 - L2 LINE L2 -554 2760 1702 216 0 0 0 chr4 16722252 16722276 -167566386 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 873 300 83 127 chr4 16722276 16723680 -167564982 - L2 LINE L2 -1612 1702 448 458 320 76 31 chr4 16723790 16724015 -167564647 - MIR SINE MIR -26 236 2 1336 206 61 0 chr4 16724109 16724544 -167564118 + MLT2B1 LTR ERVL 2 513 -2 238 336 36 7 chr4 16725005 16725145 -167563517 + L3b LINE CR1 1117 1260 -323 703 161 11 35 chr4 16726124 16726596 -167562066 + (TA)n Simple_repeat Simple_repeat 1 460 0 242 222 0 25 chr4 16726622 16726703 -167561959 + (TATATG)n Simple_repeat Simple_repeat 6 84 0 378 274 143 34 chr4 16726908 16727083 -167561579 + MIR SINE MIR 48 241 -21 1820 134 52 71 chr4 16727460 16727841 -167560821 + THE1C LTR MaLR 2 375 0 944 201 12 85 chr4 16728344 16728512 -167560150 - AluJo SINE Alu -17 295 151 2158 106 10 3 chr4 16728512 16728805 -167559857 - AluSq SINE Alu -18 295 1 944 201 12 85 chr4 16728805 16728895 -167559767 - AluJo SINE Alu -161 151 56 1883 185 9 0 chr4 16728909 16729239 -167559423 + MER61A LTR ERV1 11 343 0 258 155 0 86 chr4 16729239 16729297 -167559365 - AluJo SINE Alu -246 55 3 700 273 81 46 chr4 16729471 16729816 -167558846 - MLT1I LTR MaLR -40 369 13 25 0 0 0 chr4 16729955 16729980 -167558682 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr4 16730279 16730302 -167558360 + AT_rich Low_complexity Low_complexity 1 23 0 9629 29 1 0 chr4 16730909 16732161 -167556501 + L1PA3 LINE L1 4182 5434 -721 6327 30 1 0 chr4 16732264 16733010 -167555652 + L1PA3 LINE L1 5409 6155 0 332 307 34 58 chr4 16733448 16733653 -167555009 + MIR SINE MIR 13 212 -50 215 197 33 0 chr4 16733796 16733857 -167554805 + (TA)n Simple_repeat Simple_repeat 2 64 0 21 100 0 0 chr4 16733932 16734002 -167554660 + AT_rich Low_complexity Low_complexity 1 70 0 1627 234 84 25 chr4 16734389 16734864 -167553798 + MLT1D LTR MaLR 3 505 0 239 370 22 0 chr4 16735188 16735280 -167553382 + L2 LINE L2 3173 3266 -6 1271 263 36 14 chr4 16735474 16735893 -167552769 + MLT1C LTR MaLR 40 467 0 1117 229 36 63 chr4 16736617 16736853 -167551809 - MLT1A1 LTR MaLR 0 365 139 2070 137 73 14 chr4 16736853 16737197 -167551465 + THE1B LTR MaLR 1 364 0 1117 229 36 63 chr4 16737197 16737292 -167551370 - MLT1A1 LTR MaLR -226 139 43 383 242 6 25 chr4 16737812 16737973 -167550689 + GA-rich Low_complexity Low_complexity 3 160 0 1780 192 6 35 chr4 16737982 16738479 -167550183 - L1MB8 LINE L1 -140 6038 5492 456 233 25 104 chr4 16738901 16739141 -167549521 - L1M4b LINE L1 -5921 938 718 651 242 36 23 chr4 16739226 16739445 -167549217 - MER77 LTR ERV1 -9 596 375 1977 173 47 0 chr4 16739967 16740332 -167548330 - MSTB LTR MaLR 0 426 45 2379 73 0 58 chr4 16741315 16741645 -167547017 - AluY SINE Alu 0 311 1 21 36 0 0 chr4 16741870 16741898 -167546764 + AT_rich Low_complexity Low_complexity 1 28 0 2055 113 22 0 chr4 16741898 16742172 -167546490 - AluSx SINE Alu -24 288 9 1853 171 7 0 chr4 16742182 16742474 -167546188 - AluSx SINE Alu -18 294 1 989 277 52 28 chr4 16742536 16742959 -167545703 + MER69 DNA AcHobo 368 800 -426 437 69 81 28 chr4 16743020 16743268 -167545394 + (TA)n Simple_repeat Simple_repeat 1 261 0 208 370 12 0 chr4 16743498 16743579 -167545083 - L2 LINE L2 -2981 333 252 782 291 37 8 chr4 16743983 16744227 -167544435 - MIR SINE MIR -10 252 2 253 323 32 13 chr4 16744294 16744428 -167544234 - MIR SINE MIR -25 183 47 3363 169 9 44 chr4 16744819 16745569 -167543093 - L1MA10 LINE L1 -2 6332 5609 2204 131 0 0 chr4 16746486 16746798 -167541864 + AluSx SINE Alu 1 312 0 1868 104 0 122 chr4 16746808 16747145 -167541517 + AluY SINE Alu 1 296 -5 280 338 45 13 chr4 16748303 16748460 -167540202 - MIR3 SINE MIR -2 206 45 254 348 95 13 chr4 16748522 16748680 -167539982 + MIR SINE MIR 82 252 -10 642 26 0 0 chr4 16749116 16749192 -167539470 + (GGAGA)n Simple_repeat Simple_repeat 4 79 0 287 224 24 0 chr4 16749900 16749985 -167538677 + CT-rich Low_complexity Low_complexity 1 87 0 35 24 0 0 chr4 16750068 16750110 -167538552 + AT_rich Low_complexity Low_complexity 1 42 0 225 230 82 37 chr4 16750238 16750373 -167538289 - L1ME LINE L1 -209 5912 5772 536 316 29 14 chr4 16751167 16751512 -167537150 + L1ME3A LINE L1 904 1253 -4866 445 276 128 64 chr4 16751533 16752555 -167536107 + L1ME3A LINE L1 1287 2371 -3758 212 207 55 28 chr4 16752626 16752771 -167535891 + (TA)n Simple_repeat Simple_repeat 2 150 0 23 92 0 0 chr4 16752903 16752968 -167535694 + AT_rich Low_complexity Low_complexity 1 65 0 23 0 0 0 chr4 16753205 16753228 -167535434 + AT_rich Low_complexity Low_complexity 1 23 0 30 0 0 0 chr4 16753333 16753363 -167535299 + AT_rich Low_complexity Low_complexity 1 30 0 239 271 59 17 chr4 16753674 16753792 -167534870 + L1ME3A LINE L1 2363 2485 -3644 692 247 169 58 chr4 16753948 16754063 -167534599 + L1ME3A LINE L1 5570 5671 -482 1445 149 93 30 chr4 16754063 16754331 -167534331 + AluJb SINE Alu 5 289 -23 2352 48 0 14 chr4 16754335 16754630 -167534032 + AluY SINE Alu 1 291 -20 692 247 169 58 chr4 16754630 16754958 -167533704 + L1ME3A LINE L1 5673 6068 -85 526 311 52 37 chr4 16754994 16755451 -167533211 - HAL1 LINE L1 -7 2500 2037 632 283 60 45 chr4 16755533 16755660 -167533002 - HAL1 LINE L1 -666 1841 1717 293 0 27 0 chr4 16755660 16755697 -167532965 + (TTA)n Simple_repeat Simple_repeat 2 39 0 632 283 60 45 chr4 16755697 16756015 -167532647 - HAL1 LINE L1 -790 1717 1389 809 227 23 46 chr4 16756031 16756055 -167532607 - MER58A DNA MER1_type -2204 216 193 1808 126 71 44 chr4 16756055 16756420 -167532242 + THE1C LTR MaLR 1 375 0 809 227 23 46 chr4 16756420 16756611 -167532051 - MER58A DNA MER1_type -2227 193 6 658 343 94 33 chr4 16756629 16757824 -167530838 - HAL1 LINE L1 -1139 1368 101 328 302 111 5 chr4 16757830 16758019 -167530643 + L1M4 LINE L1 2117 2325 -3821 792 250 6 0 chr4 16758276 16758456 -167530206 + Tigger3(Golem) DNA MER2_type 1 181 -2848 2278 141 88 33 chr4 16758577 16758778 -167529884 + Tigger3(Golem) DNA MER2_type 2512 2700 -329 1766 157 112 45 chr4 16758778 16759179 -167529483 + MSTA LTR MaLR 1 428 0 2278 141 88 33 chr4 16759179 16759258 -167529404 + Tigger3(Golem) DNA MER2_type 2700 2773 -256 2318 104 0 0 chr4 16759258 16759555 -167529107 - AluSp SINE Alu -16 297 1 2278 141 88 33 chr4 16759555 16759763 -167528899 + Tigger3(Golem) DNA MER2_type 2773 3028 -1 216 228 0 0 chr4 16759765 16759822 -167528840 + (TA)n Simple_repeat Simple_repeat 1 57 0 288 0 0 0 chr4 16759857 16759889 -167528773 + (CA)n Simple_repeat Simple_repeat 2 33 0 382 220 20 60 chr4 16760307 16760407 -167528255 - MER58A DNA MER1_type -5 102 7 1368 166 35 94 chr4 16760856 16761175 -167527487 - AluJo SINE Alu -12 300 1 198 333 161 12 chr4 16761175 16761343 -167527319 - MIR SINE MIR -67 195 3 1054 246 130 6 chr4 16761468 16761814 -167526848 - MSTD LTR MaLR -2 394 6 2121 104 19 26 chr4 16762329 16762638 -167526024 + AluSg SINE Alu 1 307 -3 22973 31 1 0 chr4 16763067 16766613 -167522049 - L1PA3 LINE L1 0 6155 2607 17110 43 58 4 chr4 16766713 16769012 -167519650 - L1PA3 LINE L1 -3718 2428 5 254 217 87 122 chr4 16769034 16769142 -167519520 - MIR SINE MIR -49 213 124 2117 111 0 7 chr4 16769142 16769421 -167519241 + AluSg SINE Alu 18 294 -16 254 217 87 122 chr4 16769421 16769523 -167519139 - MIR SINE MIR -138 124 20 342 0 0 0 chr4 16769685 16769723 -167518939 + (CA)n Simple_repeat Simple_repeat 2 39 0 209 321 77 63 chr4 16769793 16770207 -167518455 - L2 LINE L2 -14 3258 2839 341 329 78 18 chr4 16770468 16770635 -167518027 - MIR SINE MIR -16 246 70 1808 94 0 4 chr4 16771681 16771925 -167516737 + AluSq SINE Alu 71 313 0 1411 128 55 0 chr4 16772217 16772435 -167516227 - MER30 DNA MER1_type 0 230 1 2937 73 29 20 chr4 16772450 16772859 -167515803 - L1PA6 LINE L1 -2 6152 5740 22 35 0 0 chr4 16772930 16772959 -167515703 + AT_rich Low_complexity Low_complexity 1 29 0 244 303 83 9 chr4 16773198 16773307 -167515355 + MLT1L LTR MaLR 163 279 -336 446 278 151 36 chr4 16773402 16773787 -167514875 + L1ME3 LINE L1 5715 6143 -19 1902 162 0 16 chr4 16773828 16774143 -167514519 - AluJo SINE Alu -2 310 1 22 56 0 0 chr4 16774502 16774538 -167514124 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr4 16774638 16774660 -167514002 + AT_rich Low_complexity Low_complexity 1 22 0 1138 287 48 28 chr4 16774767 16775205 -167513457 - L1MC4a LINE L1 -1922 5886 5433 1913 136 54 38 chr4 16775205 16775574 -167513088 - THE1C LTR MaLR 0 375 1 1138 287 48 28 chr4 16775574 16775679 -167512983 - L1MC4a LINE L1 -2375 5433 5332 192 40 0 0 chr4 16775699 16775724 -167512938 + (CA)n Simple_repeat Simple_repeat 2 26 0 899 196 0 7 chr4 16776090 16776243 -167512419 - AluJb SINE Alu -27 285 134 591 292 79 10 chr4 16776268 16776470 -167512192 + MIR SINE MIR 9 224 -38 477 297 76 25 chr4 16776499 16776775 -167511887 - L1MC4a LINE L1 -1470 4676 4387 28 61 0 0 chr4 16776883 16776932 -167511730 + AT_rich Low_complexity Low_complexity 1 49 0 4641 159 35 14 chr4 16776965 16777849 -167510813 + L1MC1 LINE L1 5429 6331 -2 1458 167 72 0 chr4 16777858 16778121 -167510541 + AluJo SINE Alu 5 286 -26 213 182 73 0 chr4 16779033 16779088 -167509574 + MIR SINE MIR 83 141 -121 252 313 48 90 chr4 16779100 16779266 -167509396 - MER5B DNA MER1_type 0 178 20 192 267 33 0 chr4 16779276 16779336 -167509326 + MIR3 SINE MIR 143 204 -4 747 269 6 0 chr4 16779556 16779731 -167508931 - MER45A DNA AcHobo -2 176 1 21 0 0 0 chr4 16779970 16779991 -167508671 + AT_rich Low_complexity Low_complexity 1 21 0 480 291 46 7 chr4 16780442 16780593 -167508069 - MIR SINE MIR -93 169 13 2172 124 0 16 chr4 16780769 16781075 -167507587 - AluSx SINE Alu -11 301 1 198 156 0 0 chr4 16781664 16781709 -167506953 + (TG)n Simple_repeat Simple_repeat 2 46 0 758 300 26 13 chr4 16781865 16782168 -167506494 - LTR16B LTR ERVL 0 464 158 282 340 160 7 chr4 16782369 16782513 -167506149 + L2 LINE L2 3107 3272 0 196 274 14 41 chr4 16782537 16782610 -167506052 - L2 LINE L2 -565 2749 2679 427 306 42 47 chr4 16782611 16782804 -167505858 + MIR SINE MIR 8 199 -63 1939 132 57 34 chr4 16782805 16783154 -167505508 + THE1B LTR MaLR 1 357 -7 394 296 63 0 chr4 16783451 16783593 -167505069 - MIR SINE MIR -104 158 8 195 69 0 0 chr4 16783791 16783820 -167504842 + (T)n Simple_repeat Simple_repeat 1 29 0 256 299 35 11 chr4 16783979 16784066 -167504596 + L2 LINE L2 3181 3269 -3 25 0 0 0 chr4 16784116 16784141 -167504521 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr4 16784551 16784575 -167504087 + AT_rich Low_complexity Low_complexity 1 24 0 372 77 0 0 chr4 16785163 16785215 -167503447 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 27 100 0 0 chr4 16785373 16785463 -167503199 + AT_rich Low_complexity Low_complexity 1 90 0 255 246 104 0 chr4 16785463 16785597 -167503065 - L1ME4a LINE L1 -4 6117 5970 2260 97 3 26 chr4 16786928 16787239 -167501423 - AluSx SINE Alu -8 304 1 231 236 173 18 chr4 16787506 16787616 -167501046 + MLT1J1 LTR MaLR 71 197 -249 481 211 0 44 chr4 16787698 16787812 -167500850 + MLT1J2 LTR MaLR 342 450 0 252 0 0 0 chr4 16788152 16788180 -167500482 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 23 0 0 0 chr4 16789385 16789408 -167499254 + AT_rich Low_complexity Low_complexity 1 23 0 328 280 43 60 chr4 16789808 16789976 -167498686 + MIR3 SINE MIR 5 171 -65 197 315 63 45 chr4 16790486 16790597 -167498065 - MIR SINE MIR -62 146 34 1899 175 0 7 chr4 16790689 16790992 -167497670 - AluSx SINE Alu -11 301 1 243 332 194 28 chr4 16791246 16791535 -167497127 + L2 LINE L2 2961 3297 -16 225 0 0 0 chr4 16791537 16791562 -167497100 + (CA)n Simple_repeat Simple_repeat 2 26 0 2175 128 0 10 chr4 16791563 16791875 -167496787 + AluSq SINE Alu 1 309 -4 23 0 0 0 chr4 16792491 16792514 -167496148 + AT_rich Low_complexity Low_complexity 1 23 0 298 301 97 7 chr4 16792638 16792805 -167495857 - MIR SINE MIR -61 201 23 180 283 168 18 chr4 16794412 16794490 -167494172 + L2 LINE L2 3183 3284 -29 2725 138 7 14 chr4 16794490 16794919 -167493743 - MSTA LTR MaLR -2 426 1 180 283 168 18 chr4 16794919 16794953 -167493709 + L2 LINE L2 3284 3312 -1 208 313 104 77 chr4 16796252 16796434 -167492228 - L2 LINE L2 0 3272 3086 4329 70 29 84 chr4 16796739 16797463 -167491199 - L1PA12 LINE L1 -3 6165 5482 1094 93 0 6 chr4 16797463 16797625 -167491037 + L1PA12 LINE L1 5322 5482 -681 276 29 0 0 chr4 16797798 16797832 -167490830 - MLT2A1 LTR ERVL 0 444 411 614 107 46 23 chr4 16797955 16798247 -167490415 + (TA)n Simple_repeat Simple_repeat 1 298 0 554 323 74 31 chr4 16798454 16798844 -167489818 - MLT1I LTR MaLR -2 407 1 1998 130 0 47 chr4 16799075 16799397 -167489265 - AluSx SINE Alu -5 307 1 507 237 26 0 chr4 16800088 16800202 -167488460 - MLT1H1 LTR MaLR -2 553 437 477 265 113 27 chr4 16800196 16800381 -167488281 - MER63A DNA MER1_type -8 202 2 * 1353 256 86 52 chr4 16800381 16800585 -167488077 - MLT1H1 LTR MaLR -124 431 236 2091 124 3 3 chr4 16800585 16800884 -167487778 - AluSq SINE Alu -12 301 3 1353 256 86 52 chr4 16800884 16801084 -167487578 - MLT1H1 LTR MaLR -319 236 13 297 0 0 0 chr4 16801095 16801128 -167487534 + (CA)n Simple_repeat Simple_repeat 2 34 0 284 314 0 0 chr4 16801132 16801218 -167487444 + L2 LINE L2 2285 2370 -944 234 327 46 26 chr4 16801320 16801473 -167487189 - MLT1J1 LTR MaLR -132 314 159 243 0 0 0 chr4 16802776 16802803 -167485859 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 671 304 137 20 chr4 16802826 16803132 -167485530 - MLT1J2 LTR MaLR -4 446 105 2129 121 0 7 chr4 16803306 16803604 -167485058 + AluSx SINE Alu 1 296 -16 198 347 88 49 chr4 16803615 16804001 -167484661 + L2 LINE L2 2489 2889 -425 272 101 14 87 chr4 16804005 16804074 -167484588 - L1MD2 LINE L1 -3 6356 6293 3001 203 31 3 chr4 16804512 16805093 -167483569 + MER77 LTR ERV1 1 597 -8 183 300 92 46 chr4 16805119 16805249 -167483413 + MIR SINE MIR 76 211 -51 331 283 116 51 chr4 16805292 16805585 -167483077 - L1ME4a LINE L1 -246 5875 5564 22 0 0 0 chr4 16806956 16806978 -167481684 + AT_rich Low_complexity Low_complexity 1 22 0 436 312 47 24 chr4 16807006 16807176 -167481486 + MIR SINE MIR 52 225 -37 296 302 37 34 chr4 16808089 16808261 -167480401 - MIR SINE MIR -64 144 3 2448 82 26 0 chr4 16808902 16809243 -167479419 - L1PB1 LINE L1 -1 6150 5801 180 348 34 11 chr4 16809276 16809365 -167479297 + MIR SINE MIR 21 111 -97 330 297 35 83 chr4 16809380 16809525 -167479137 + MER5A DNA MER1_type 25 167 -16 351 357 60 36 chr4 16809610 16809778 -167478884 + MER5A DNA MER1_type 17 188 -1 222 337 105 0 chr4 16809813 16809908 -167478754 + MIR SINE MIR 151 255 -7 1171 211 24 124 chr4 16812010 16812422 -167476240 - MLT1A2 LTR MaLR 0 374 4 1529 186 33 19 chr4 16812870 16813177 -167475485 + AluJb SINE Alu 1 311 -1 529 227 76 11 chr4 16813431 16813718 -167474944 + MER93b LTR ERV1 39 373 0 229 203 101 0 chr4 16813794 16813863 -167474799 - L1MC4 LINE L1 -138 7904 7829 229 259 25 25 chr4 16813905 16813986 -167474676 - L1ME2 LINE L1 -10 6088 6008 2076 239 53 29 chr4 16813988 16814865 -167473797 - L1ME2 LINE L1 -141 5957 5057 1432 304 29 45 chr4 16816294 16816961 -167471701 - MER70-int LTR ERVL -1550 3473 2818 522 311 165 20 chr4 16817345 16817696 -167470966 - MER70-int LTR ERVL -2278 2745 2344 1674 262 32 21 chr4 16817696 16818323 -167470339 - L1ME2 LINE L1 -1060 5020 4387 1314 323 38 30 chr4 16818339 16819097 -167469565 - L1ME2 LINE L1 -5296 774 11 21 0 0 0 chr4 16821841 16821862 -167466800 + AT_rich Low_complexity Low_complexity 1 21 0 388 136 0 0 chr4 16822811 16822870 -167465792 - AluJb SINE Alu -8 294 236 1282 136 0 0 chr4 16822870 16823047 -167465615 - AluJb SINE Alu -133 179 3 186 258 16 32 chr4 16823203 16823265 -167465397 + L2 LINE L2 2698 2758 -556 1115 250 34 17 chr4 16823298 16823594 -167465068 - MSTB2 LTR MaLR 0 457 157 276 111 0 22 chr4 16823872 16823917 -167464745 - MSTB2 LTR MaLR -352 44 1 1260 119 0 0 chr4 16824323 16824500 -167464162 - AluY SINE Alu -3 308 132 1791 129 24 0 chr4 16824500 16824748 -167463914 - AluSg SINE Alu -56 254 1 412 282 38 8 chr4 16824754 16824885 -167463777 - MER63 DNA MER1_type -298 764 4 1400 173 58 18 chr4 16824935 16825213 -167463449 - AluJo SINE Alu -23 289 1 211 364 190 8 chr4 16825620 16825741 -167462921 + L2 LINE L2 3128 3270 -2 294 247 12 12 chr4 16825765 16825846 -167462816 + MER92C LTR ERV1 1 81 -473 362 135 0 27 chr4 16825848 16825922 -167462740 + MER92A LTR ERV1 341 412 0 317 301 19 10 chr4 16826145 16826248 -167462414 + MER5A DNA MER1_type 80 183 -6 438 329 47 6 chr4 16827195 16827365 -167461297 - MIR SINE MIR -73 189 13 210 356 0 0 chr4 16827634 16827693 -167460969 + MIR SINE MIR 20 78 -184 25 65 0 0 chr4 16828309 16828355 -167460307 + AT_rich Low_complexity Low_complexity 1 46 0 219 295 124 55 chr4 16828366 16828422 -167460240 - MIR SINE MIR -5 257 206 1849 187 53 11 chr4 16828422 16828796 -167459866 - MLT1B LTR MaLR 0 390 1 219 295 124 55 chr4 16828796 16828956 -167459706 - MIR SINE MIR -56 206 26 1651 196 45 39 chr4 16829310 16829667 -167458995 - MLT1A2 LTR MaLR -15 359 1 427 228 89 24 chr4 16830694 16830817 -167457845 + L1ME LINE L1 5684 5814 -307 787 325 8 8 chr4 16832545 16832794 -167455868 + MIR SINE MIR 11 259 -3 527 273 111 30 chr4 16832909 16833107 -167455555 + MER58C DNA MER1_type 2 215 0 365 344 47 0 chr4 16833460 16833588 -167455074 - MIR SINE MIR -81 181 48 282 160 0 0 chr4 16834334 16834384 -167454278 + (TG)n Simple_repeat Simple_repeat 1 50 0 1445 268 56 39 chr4 16834399 16834933 -167453729 - MER119 DNA MER1_type -1 582 40 575 502 154 4 chr4 16834946 16835199 -167453463 - AluJb SINE Alu -11 291 1 770 272 142 30 chr4 16835486 16835824 -167452838 + L1MEc LINE L1 37 412 -5984 369 313 19 6 chr4 16835970 16836130 -167452532 + L1MEc LINE L1 604 765 -5631 713 191 64 38 chr4 16836137 16836372 -167452290 - L1MEc LINE L1 -4063 2333 2093 267 293 61 0 chr4 16836403 16836485 -167452177 - HERV16 LTR ERVL -4908 88 2 338 236 39 0 chr4 16837181 16837279 -167451383 - MLT1H LTR MaLR -2 593 460 334 287 183 12 chr4 16838646 16838810 -167449852 - MIR SINE MIR -15 247 56 473 330 53 13 chr4 16838884 16839111 -167449551 + MIR SINE MIR 2 237 -25 399 152 0 15 chr4 16839217 16839283 -167449379 + Tigger2 DNA MER2_type 4 68 -2650 * 2232 124 8 153 chr4 16839274 16839796 -167448866 + Tigger2 DNA MER2_type 2273 2718 0 322 280 186 38 chr4 16839809 16840073 -167448589 + L2 LINE L2 3006 3308 -5 28 0 0 0 chr4 16840074 16840102 -167448560 + AT_rich Low_complexity Low_complexity 1 28 0 1860 187 18 33 chr4 16840139 16840263 -167448399 + MLT1B LTR MaLR 1 125 -265 1475 213 33 35 chr4 16840263 16840629 -167448033 - MLT1A1 LTR MaLR 0 365 1 1860 187 18 33 chr4 16840629 16840900 -167447762 + MLT1B LTR MaLR 125 390 0 1762 115 8 0 chr4 16841188 16841449 -167447213 - L1PA10 LINE L1 -1 6167 5905 278 54 0 0 chr4 16841449 16841486 -167447176 + L1PA8A LINE L1 5586 5622 -509 536 280 70 0 chr4 16842161 16842318 -167446344 + MER5A DNA MER1_type 1 168 -21 252 127 0 133 chr4 16842505 16842565 -167446097 + AluSp SINE Alu 123 170 -133 23 0 0 0 chr4 17043522 17043545 -167245117 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr4 17043583 17043620 -167245042 + AT_rich Low_complexity Low_complexity 1 37 0 389 270 108 45 chr4 17043773 17043995 -167244667 + MIR SINE MIR 21 256 -6 201 108 0 0 chr4 17044081 17044118 -167244544 + (T)n Simple_repeat Simple_repeat 1 37 0 276 310 115 11 chr4 17044379 17044553 -167244109 + MIR SINE MIR 69 260 -2 46 62 0 0 chr4 17044650 17044731 -167243931 + AT_rich Low_complexity Low_complexity 1 81 0 2120 32 0 0 chr4 17044744 17044991 -167243671 - L1PA5 LINE L1 -8 6146 5900 765 287 68 45 chr4 17045195 17046663 -167241999 - L1ME3A LINE L1 -230 5923 4421 462 381 115 19 chr4 17047055 17047535 -167241127 - L1ME3A LINE L1 -5537 582 57 362 289 58 58 chr4 17048723 17048896 -167239766 + MIR SINE MIR 86 258 -4 272 229 60 36 chr4 17049354 17049437 -167239225 + MLT1I LTR MaLR 128 212 -197 281 344 57 38 chr4 17049645 17049802 -167238860 + MIR SINE MIR 103 262 0 27 29 0 0 chr4 17050349 17050383 -167238279 + AT_rich Low_complexity Low_complexity 1 34 0 39 68 0 19 chr4 17051115 17051175 -167237487 + AT_rich Low_complexity Low_complexity 1 60 -41 193 0 94 0 chr4 17051175 17051207 -167237455 + A-rich Low_complexity Low_complexity 3 37 0 39 68 0 19 chr4 17051207 17051249 -167237413 + AT_rich Low_complexity Low_complexity 60 101 0 249 260 71 63 chr4 17051304 17051431 -167237231 - MIR3 SINE MIR -66 142 15 467 236 35 7 chr4 17052069 17052213 -167236449 + MER65A LTR ERV1 1 148 -297 842 204 7 0 chr4 17052331 17052483 -167236179 + FRAM SINE Alu 4 156 -10 526 303 114 13 chr4 17052782 17053010 -167235652 + MIR SINE MIR 12 262 0 187 281 198 31 chr4 17053027 17053123 -167235539 - MIR SINE MIR -148 114 3 2105 113 61 28 chr4 17053801 17054164 -167234498 - THE1C LTR MaLR 0 375 1 270 0 0 0 chr4 17054273 17054303 -167234359 + (TG)n Simple_repeat Simple_repeat 2 31 0 735 174 37 0 chr4 17055137 17055327 -167233335 + Charlie5 DNA MER1_type 2367 2563 -49 354 309 24 0 chr4 17055409 17055535 -167233127 + MER94 DNA DNA 1 129 -5 2563 105 8 3 chr4 17056418 17056779 -167231883 - THE1B LTR MaLR -1 363 1 239 367 39 33 chr4 17056799 17056979 -167231683 + L2 LINE L2 2919 3099 -173 258 259 39 49 chr4 17057178 17057314 -167231348 - MIR SINE MIR -63 145 50 380 284 35 7 chr4 17058550 17058691 -167229971 - MIR SINE MIR -86 176 32 927 265 77 8 chr4 17059033 17059267 -167229395 - MIR SINE MIR 0 262 13 182 250 0 39 chr4 17059538 17059590 -167229072 + L2 LINE L2 3264 3313 0 2533 67 3 0 chr4 17060027 17060355 -167228307 - L1PA8 LINE L1 -6 6166 5838 209 274 34 120 chr4 17060398 17060515 -167228147 + MIR SINE MIR 21 127 -81 2258 213 65 37 chr4 17061514 17061921 -167226741 - MLT1E LTR MaLR 0 593 164 1312 132 44 31 chr4 17061921 17062148 -167226514 + MER30 DNA MER1_type 1 230 0 2258 213 65 37 chr4 17062148 17062314 -167226348 - MLT1E LTR MaLR -429 164 4 206 283 59 59 chr4 17062317 17062469 -167226193 - MIR SINE MIR -61 201 50 200 327 96 0 chr4 17062560 17062664 -167225998 - MIR SINE MIR -26 236 123 681 224 53 0 chr4 17062715 17062885 -167225777 + MIR SINE MIR 74 252 -10 2073 119 10 3 chr4 17062941 17063235 -167225427 + AluSc SINE Alu 1 296 -13 583 293 5 50 chr4 17063812 17064010 -167224652 + MIR SINE MIR 20 208 -54 22 0 0 0 chr4 17064258 17064280 -167224382 + AT_rich Low_complexity Low_complexity 1 22 0 257 301 130 63 chr4 17065540 17065779 -167222883 - MIR SINE MIR -2 260 6 518 206 115 57 chr4 17066120 17066329 -167222333 + LTR50 LTR ERVL 3 223 -572 407 305 51 0 chr4 17066378 17066555 -167222107 + LTR33A LTR ERVL 337 522 -1 242 218 18 18 chr4 17066601 17066656 -167222006 - L3 LINE CR1 -4 1573 1519 2297 135 13 19 chr4 17066697 17067074 -167221588 - THE1C LTR MaLR 0 375 1 9218 124 51 39 chr4 17067074 17068632 -167220030 - THE1C-int LTR MaLR 0 1580 3 2556 111 8 13 chr4 17068634 17069011 -167219651 - THE1C LTR MaLR 0 375 1 311 265 0 29 chr4 17069464 17069566 -167219096 + (TTCA)n Simple_repeat Simple_repeat 3 101 0 444 319 115 30 chr4 17070369 17070769 -167217893 - L2 LINE L2 -209 3063 2618 408 158 0 0 chr4 17071459 17071535 -167217127 + CT-rich Low_complexity Low_complexity 1 76 0 180 306 121 48 chr4 17071871 17071995 -167216667 - L2 LINE L2 -3 3269 3137 333 47 0 0 chr4 17072031 17072074 -167216588 + (TC)n Simple_repeat Simple_repeat 2 44 0 315 0 0 0 chr4 17072073 17072108 -167216554 + (TA)n Simple_repeat Simple_repeat 2 36 0 * 296 295 65 29 chr4 17072147 17072286 -167216376 + MIR SINE MIR 119 262 0 1618 134 33 39 chr4 17072494 17072801 -167215861 - THE1C LTR MaLR -69 306 2 811 327 147 7 chr4 17073358 17073889 -167214773 + L2 LINE L2 2455 3060 -253 265 253 27 13 chr4 17073880 17073955 -167214707 - L2 LINE L2 -614 2700 2625 * 201 279 16 16 chr4 17073981 17074042 -167214620 + L2 LINE L2 3193 3253 -60 1703 160 7 24 chr4 17074976 17075295 -167213367 + AluSx SINE Alu 2 315 0 3068 16 0 0 chr4 17075295 17075662 -167213000 + L1HS LINE L1 5789 6155 0 188 33 0 33 chr4 17075667 17075697 -167212965 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 186 239 23 23 chr4 17075769 17075857 -167212805 + CT-rich Low_complexity Low_complexity 3 90 0 354 281 9 44 chr4 17075971 17076085 -167212577 - MLT1K LTR MaLR -290 298 189 196 281 47 31 chr4 17077153 17077217 -167211445 - MIR3 SINE MIR 0 208 144 25 0 0 0 chr4 17077353 17077378 -167211284 + AT_rich Low_complexity Low_complexity 1 25 0 1903 185 111 36 chr4 17077426 17077507 -167211155 + MLT1D LTR MaLR 1 75 -430 189 0 0 0 chr4 17077507 17077528 -167211134 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 1903 185 111 36 chr4 17077528 17077916 -167210746 + MLT1D LTR MaLR 75 505 0 271 235 20 49 chr4 17078010 17078112 -167210550 + CT-rich Low_complexity Low_complexity 4 102 0 354 351 21 12 chr4 17078165 17078331 -167210331 - MIR SINE MIR -35 227 58 420 290 109 5 chr4 17078657 17078850 -167209812 - MIR SINE MIR -12 250 38 412 280 32 54 chr4 17079290 17079476 -167209186 + MIR SINE MIR 3 184 -78 827 142 7 0 chr4 17079555 17079696 -167208966 + L1PA16 LINE L1 6024 6165 -1 260 306 107 46 chr4 17080407 17080603 -167208059 - L2 LINE L2 -7 3306 3099 437 329 61 0 chr4 17080655 17080819 -167207843 - L2 LINE L2 -215 3098 2925 195 250 67 17 chr4 17080983 17081043 -167207619 - L2 LINE L2 -1507 1807 1745 291 337 122 10 chr4 17081052 17081248 -167207414 + L2 LINE L2 2312 2529 -785 410 347 7 13 chr4 17082189 17082339 -167206323 - MIR SINE MIR -68 194 46 723 281 92 4 chr4 17082787 17083015 -167205647 + MIR SINE MIR 14 261 -1 204 342 103 8 chr4 17083049 17083166 -167205496 + MIR SINE MIR 109 236 -26 393 321 52 44 chr4 17083844 17084093 -167204569 - L2 LINE L2 -165 3148 2898 1123 212 9 0 chr4 17084187 17084399 -167204263 - MER58A DNA MER1_type -1 223 10 418 306 114 40 chr4 17084441 17084855 -167203807 + MLT1G LTR MaLR 1 410 -180 381 146 30 3 chr4 17084889 17084977 -167203685 + MLT1G LTR MaLR 463 549 0 531 200 0 0 chr4 17085171 17085266 -167203396 + THE1C LTR MaLR 38 132 -243 926 230 33 15 chr4 17085271 17085602 -167203060 - L1MDb LINE L1 -5203 1340 1004 320 250 33 25 chr4 17086005 17086125 -167202537 - L1MDb LINE L1 -6358 182 62 2689 102 5 3 chr4 17086331 17086705 -167201957 + THE1C LTR MaLR 1 375 0 237 139 0 0 chr4 17087184 17087227 -167201435 + (TG)n Simple_repeat Simple_repeat 2 44 0 1689 168 10 10 chr4 17087644 17087996 -167200666 - L1MA8 LINE L1 0 6297 5959 474 266 112 48 chr4 17089304 17089492 -167199170 + MIR SINE MIR 45 244 -18 205 83 0 28 chr4 17089572 17089608 -167199054 + (TTTTG)n Simple_repeat Simple_repeat 4 38 0 184 246 54 78 chr4 17089907 17090074 -167198588 - L2 LINE L2 -538 2776 2614 257 312 1 84 chr4 17090616 17090758 -167197904 + MIR3 SINE MIR 11 143 -73 181 255 0 20 chr4 17090844 17090895 -167197767 - L2 LINE L2 0 3313 3264 1685 137 24 27 chr4 17092156 17092448 -167196214 - MER7A DNA MER2_type -1 345 57 2135 100 14 14 chr4 17092448 17092738 -167195924 + AluSq SINE Alu 1 290 -23 203 246 217 0 chr4 17093205 17093274 -167195388 + MIR SINE MIR 38 121 -141 1245 210 38 7 chr4 17093274 17093564 -167195098 - MLT1D LTR MaLR 0 505 207 40808 35 21 1 chr4 17093618 17099648 -167189014 + L1PA2 LINE L1 1 6155 0 584 230 37 31 chr4 17099669 17099830 -167188832 - MLT1D LTR MaLR -341 164 3 270 193 0 0 chr4 17099904 17099961 -167188701 + (CA)n Simple_repeat Simple_repeat 2 58 0 1762 202 26 0 chr4 17100252 17100629 -167188033 + MER57A LTR ERV1 8 394 -9 2243 133 0 0 chr4 17100713 17101021 -167187641 - AluSx SINE Alu 0 312 5 1195 242 78 14 chr4 17101672 17102032 -167186630 + L2 LINE L2 1589 1971 -1343 581 217 37 136 chr4 17102068 17102286 -167186376 - L1 LINE L1 -870 5276 5038 1941 181 56 17 chr4 17102286 17102696 -167185966 - MSTB LTR MaLR 0 426 1 581 217 37 136 chr4 17102696 17102733 -167185929 - L1 LINE L1 -1108 5038 4999 309 86 0 69 chr4 17102733 17102791 -167185871 + AluSc SINE Alu 242 295 -4 581 217 37 136 chr4 17102791 17102954 -167185708 - L1 LINE L1 -1147 4999 4864 * 3437 201 42 15 chr4 17102953 17103816 -167184846 + L1MB4 LINE L1 5288 6173 -7 999 293 87 15 chr4 17103845 17104234 -167184428 + L2 LINE L2 2037 2453 -861 606 281 26 1 chr4 17104765 17104936 -167183726 + MIR SINE MIR 19 192 -63 3637 144 8 16 chr4 17105148 17105766 -167182896 - L1PA15 LINE L1 -21 6144 5532 225 262 16 49 chr4 17106726 17106787 -167181875 + L2 LINE L2 3132 3190 -82 216 304 14 0 chr4 17106833 17106902 -167181760 + MIR SINE MIR 78 147 -115 540 160 0 0 chr4 17107025 17107125 -167181537 + CT-rich Low_complexity Low_complexity 1 100 0 205 156 0 44 chr4 17108071 17108116 -167180546 + (CATATA)n Simple_repeat Simple_repeat 1 43 0 200 268 0 0 chr4 17109746 17109787 -167178875 - L2 LINE L2 -832 2482 2442 286 327 27 33 chr4 17109862 17110012 -167178650 - MIR SINE MIR -14 248 100 1577 197 13 26 chr4 17110041 17110345 -167178317 + AluJb SINE Alu 1 300 -12 21 0 0 0 chr4 17110517 17110538 -167178124 + AT_rich Low_complexity Low_complexity 1 21 0 183 365 167 0 chr4 17110573 17110729 -167177933 + L2 LINE L2 2954 3135 -178 267 31 0 0 chr4 17110756 17110788 -167177874 + (CA)n Simple_repeat Simple_repeat 1 32 0 825 224 20 15 chr4 17110808 17111004 -167177658 - MER20 DNA MER1_type -22 197 1 245 274 108 29 chr4 17111070 17111153 -167177509 + L2 LINE L2 3204 3298 -15 1813 179 3 3 chr4 17111153 17111460 -167177202 + AluJo SINE Alu 1 307 -5 245 274 108 29 chr4 17111460 17111478 -167177184 + L2 LINE L2 3298 3313 0 901 147 88 0 chr4 17111529 17111712 -167176950 - AluSq SINE Alu 0 330 136 337 250 91 74 chr4 17111742 17111918 -167176744 - MIR SINE MIR -79 183 5 185 342 25 0 chr4 17112076 17112155 -167176507 + L2 LINE L2 2429 2509 -805 334 343 57 43 chr4 17112155 17112365 -167176297 + L2 LINE L2 2761 2973 -341 504 241 9 0 chr4 17112370 17112478 -167176184 + MER58A DNA MER1_type 45 153 0 246 253 58 46 chr4 17113504 17113591 -167175071 - MLT1I LTR MaLR -258 151 64 1915 214 59 5 chr4 17114143 17114586 -167174076 - MLT1C LTR MaLR 0 467 1 525 270 79 60 chr4 17114625 17114877 -167173785 - MIR SINE MIR 0 262 6 1280 292 65 66 chr4 17115659 17116489 -167172173 + L2 LINE L2 2129 3289 -24 247 290 105 20 chr4 17116957 17117157 -167171505 - L1ME LINE L1 -284 5837 5621 315 278 137 34 chr4 17117275 17117480 -167171182 - L1ME LINE L1 -786 5573 5348 213 286 16 0 chr4 17117631 17117694 -167170968 + CT-rich Low_complexity Low_complexity 1 64 0 804 65 0 0 chr4 17117704 17117811 -167170851 + (TTCC)n Simple_repeat Simple_repeat 4 110 0 724 253 6 6 chr4 17117816 17117974 -167170688 - AluJo SINE Alu -34 278 121 279 173 0 0 chr4 17118084 17118136 -167170526 + (TA)n Simple_repeat Simple_repeat 1 52 0 270 0 0 0 chr4 17118151 17118181 -167170481 + (CA)n Simple_repeat Simple_repeat 2 31 0 477 290 6 22 chr4 17118181 17118203 -167170459 - MLT2B1 LTR ERVL -42 478 457 243 0 0 0 chr4 17118203 17118230 -167170432 + (GA)n Simple_repeat Simple_repeat 2 28 0 477 290 6 22 chr4 17118230 17118390 -167170272 - MLT2B1 LTR ERVL -63 457 299 845 113 7 0 chr4 17118451 17118473 -167170189 + (TTCCC)n Simple_repeat Simple_repeat 1 164 0 845 113 7 0 chr4 17118473 17118614 -167170048 + (TTCCC)n Simple_repeat Simple_repeat 4 145 0 182 118 29 0 chr4 17118841 17118875 -167169787 + T-rich Low_complexity Low_complexity 4 38 0 770 223 26 10 chr4 17118880 17119073 -167169589 - MLT2D LTR ERVL -218 196 1 290 266 169 64 chr4 17119684 17119951 -167168711 - MLT1H LTR MaLR -254 295 1 495 171 8 17 chr4 17120456 17120573 -167168089 + GA-rich Low_complexity Low_complexity 2 117 0 342 115 0 0 chr4 17120573 17120625 -167168037 + (GGAGA)n Simple_repeat Simple_repeat 4 55 0 318 345 9 9 chr4 17120972 17121085 -167167577 - L2 LINE L2 -9 3263 3151 225 196 0 0 chr4 17121716 17121762 -167166900 + MLT1-int LTR MaLR 1211 1256 -115 2169 84 42 11 chr4 17121892 17122178 -167166484 + AluY SINE Alu 1 295 -16 620 117 0 26 chr4 17122178 17122332 -167166330 + (TA)n Simple_repeat Simple_repeat 1 150 0 220 364 136 0 chr4 17122602 17122720 -167165942 + L2 LINE L2 3102 3235 -37 641 291 39 6 chr4 17123079 17123261 -167165401 - MIR SINE MIR -57 205 18 262 325 108 30 chr4 17123500 17123703 -167164959 + MIR SINE MIR 25 243 -19 239 346 40 0 chr4 17124627 17124728 -167163934 - MIR3 SINE MIR -14 194 90 1486 226 31 19 chr4 17124945 17125360 -167163302 + L1ME3 LINE L1 5626 6045 -117 2015 152 0 0 chr4 17125393 17125720 -167162942 - AluSx SINE Alu 0 327 1 22 0 0 0 chr4 17125905 17125927 -167162735 + AT_rich Low_complexity Low_complexity 1 22 0 468 0 0 0 chr4 17126207 17126259 -167162403 + (CA)n Simple_repeat Simple_repeat 2 53 0 317 255 64 0 chr4 17126286 17126380 -167162282 - MER5A DNA MER1_type -81 108 9 2261 132 28 17 chr4 17126423 17126779 -167161883 - THE1B LTR MaLR -4 360 1 1871 201 9 5 chr4 17126887 17127319 -167161343 - L1P LINE L1 -1352 4794 4361 245 170 57 0 chr4 17127524 17127577 -167161085 - MIR SINE MIR -71 191 136 283 340 73 20 chr4 17127585 17127735 -167160927 - MIR SINE MIR 0 262 105 278 307 54 60 chr4 17128223 17128389 -167160273 + MIR3 SINE MIR 5 169 -39 359 225 146 0 chr4 17128524 17128613 -167160049 + L2 LINE L2 3169 3270 -2 362 312 106 16 chr4 17129135 17129324 -167159338 - L1MC4 LINE L1 -1 8041 7836 257 306 18 63 chr4 17129543 17129654 -167159008 - MIR SINE MIR -70 192 87 252 351 99 0 chr4 17129813 17129924 -167158738 + MER5B DNA MER1_type 56 177 -1 318 26 0 0 chr4 17130542 17130581 -167158081 + (TG)n Simple_repeat Simple_repeat 2 40 0 2740 182 42 51 chr4 17130612 17131333 -167157329 + Tigger2 DNA MER2_type 31 744 -1974 1176 148 80 0 chr4 17131388 17131625 -167157037 + Tigger2 DNA MER2_type 2463 2718 0 834 182 45 0 chr4 17131637 17131791 -167156871 - Tigger3(Golem) DNA MER2_type 0 3037 2877 292 232 0 0 chr4 17131791 17131847 -167156815 - Tigger3(Golem) DNA MER2_type -2972 57 2 2013 170 0 0 chr4 17132046 17132357 -167156305 + AluSx SINE Alu 1 311 -1 306 308 91 71 chr4 17132418 17132671 -167155991 + L3 LINE CR1 1237 1494 -83 180 379 0 11 chr4 17132909 17132996 -167155666 - L2 LINE L2 -532 2782 2697 219 265 171 72 chr4 17133176 17133327 -167155335 + MIR SINE MIR 15 188 -74 2147 87 10 42 chr4 17133327 17133636 -167155026 + AluSx SINE Alu 1 299 -13 219 265 171 72 chr4 17133636 17133665 -167154997 + MIR SINE MIR 188 213 -49 208 316 158 15 chr4 17134380 17134513 -167154149 + L2 LINE L2 2562 2713 -601 2386 66 0 13 chr4 17134914 17135218 -167153444 + AluY SINE Alu 3 302 -9 288 203 0 0 chr4 17135429 17135484 -167153178 + MLT1B LTR MaLR 1 55 -335 1990 143 14 25 chr4 17135484 17135849 -167152813 - THE1C LTR MaLR 0 375 15 694 256 11 66 chr4 17135873 17136146 -167152516 + MLT1B LTR MaLR 66 323 -67 1918 21 0 13 chr4 17136146 17136384 -167152278 - L1PA6 LINE L1 -184 5970 5736 1260 70 0 12 chr4 17136384 17136537 -167152125 + L1PA6 LINE L1 5982 6150 -4 393 176 0 0 chr4 17136539 17136613 -167152049 + MLT1B LTR MaLR 317 390 0 601 292 36 16 chr4 17136677 17136869 -167151793 - MER63A DNA MER1_type -9 201 6 21 0 0 0 chr4 17137009 17137030 -167151632 + AT_rich Low_complexity Low_complexity 1 21 0 296 286 132 0 chr4 17137109 17137200 -167151462 + L2 LINE L2 3141 3243 -29 948 188 61 14 chr4 17138435 17138712 -167149950 + MER33 DNA MER1_type 1 290 -34 532 293 98 18 chr4 17139513 17139738 -167148924 + MIR SINE MIR 13 255 -7 466 345 59 18 chr4 17140572 17140880 -167147782 - L2 LINE L2 -217 3055 2737 24 32 0 0 chr4 17140940 17140971 -167147691 + AT_rich Low_complexity Low_complexity 1 31 0 424 271 117 59 chr4 17141328 17141835 -167146827 - MLT1K LTR MaLR -2 586 13 397 42 0 0 chr4 17142197 17142245 -167146417 - L1PA6 LINE L1 -13 6141 6094 309 109 0 0 chr4 17142444 17142490 -167146172 + (TATG)n Simple_repeat Simple_repeat 3 48 0 296 410 11 0 chr4 17142563 17142751 -167145911 + MIR SINE MIR 47 236 -26 241 351 40 14 chr4 17142790 17142864 -167145798 - L2 LINE L2 -31 3282 3207 624 27 0 0 chr4 17143217 17143291 -167145371 + (TTTCC)n Simple_repeat Simple_repeat 3 76 0 816 199 0 0 chr4 17143350 17143486 -167145176 - AluJb SINE Alu -21 291 156 306 395 109 8 chr4 17144275 17144634 -167144028 - L2 LINE L2 -784 2530 2136 211 350 0 0 chr4 17144997 17145057 -167143605 + L2 LINE L2 3210 3269 -3 2254 66 0 11 chr4 17145527 17145845 -167142817 - AluY SINE Alu 0 315 1 265 269 92 54 chr4 17146516 17146646 -167142016 - MLT1K LTR MaLR -116 472 338 643 262 30 18 chr4 17147803 17147967 -167140695 - MER45A DNA AcHobo -7 171 6 * 889 304 88 29 chr4 17147966 17148374 -167140288 + LTR16A LTR ERVL 19 450 0 288 0 0 0 chr4 17149569 17149601 -167139061 + (A)n Simple_repeat Simple_repeat 1 32 0 6127 194 25 18 chr4 17149799 17151115 -167137547 - L1P LINE L1 -1399 4747 3422 746 125 0 0 chr4 17151118 17151238 -167137424 + L1PA15 LINE L1 6046 6165 0 314 309 105 40 chr4 17151327 17151479 -167137183 + MIR SINE MIR 20 181 -81 1833 109 54 93 chr4 17152618 17153004 -167135658 - THE1C LTR MaLR 0 375 5 1848 130 28 7 chr4 17153391 17153676 -167134986 - AluSg SINE Alu -19 291 1 23 0 0 0 chr4 17154197 17154220 -167134442 + AT_rich Low_complexity Low_complexity 1 23 0 766 124 9 0 chr4 17154561 17154674 -167133988 - AluSg1 SINE Alu -195 114 1 413 294 44 40 chr4 17154969 17155244 -167133418 - HAL1 LINE L1 0 2507 2232 1381 281 78 25 chr4 17155280 17155807 -167132855 + MLT1H1 LTR MaLR 1 555 0 216 250 0 111 chr4 17156100 17156172 -167132490 + MIR SINE MIR 126 189 -73 271 237 24 124 chr4 17156548 17156717 -167131945 + MLT1H1-int LTR MaLR 1443 1594 -141 726 275 126 33 chr4 17156826 17157160 -167131502 + MLT1H1 LTR MaLR 1 365 -190 220 318 47 51 chr4 17157823 17157945 -167130717 - MIR SINE MIR -79 129 6 470 301 18 0 chr4 17158045 17158208 -167130454 + MIR SINE MIR 47 212 -50 534 347 20 5 chr4 17158299 17158495 -167130167 + MIR SINE MIR 15 213 -49 1986 161 0 0 chr4 17159226 17159517 -167129145 - AluSx SINE Alu -19 293 3 266 308 100 17 chr4 17159541 17159661 -167129001 - L2 LINE L2 -38 3275 3146 214 310 11 46 chr4 17159779 17159866 -167128796 - L2 LINE L2 0 3313 3230 430 262 83 16 chr4 17160018 17160181 -167128481 + L1PB4 LINE L1 5982 6150 -6 290 359 116 15 chr4 17160224 17160483 -167128179 - L2 LINE L2 -451 2863 2579 464 265 14 104 chr4 17160638 17160849 -167127813 + MIR SINE MIR 70 261 -1 472 300 124 27 chr4 17161287 17161657 -167127005 + HAL1b LINE L1 72 477 -871 2182 146 50 19 chr4 17161694 17162111 -167126551 - MSTB1 LTR MaLR -2 430 1 1948 163 37 3 chr4 17162111 17162458 -167126204 + MER47A DNA MER2_type 5 365 -1 412 267 95 60 chr4 17162485 17162950 -167125712 + HAL1b LINE L1 578 1058 -290 467 322 60 20 chr4 17163133 17163332 -167125330 - MIR SINE MIR -15 247 41 310 197 13 26 chr4 17163399 17163475 -167125187 - L1MCa LINE L1 -4354 2072 1998 218 328 52 35 chr4 17164045 17164161 -167124501 - MIR3 SINE MIR -85 123 6 205 386 26 0 chr4 17167491 17167605 -167121057 + L2 LINE L2 2698 2814 -500 273 329 123 65 chr4 17167670 17168086 -167120576 - L2 LINE L2 -47 3266 2827 536 249 120 75 chr4 17168127 17168620 -167120042 + L1ME3 LINE L1 5410 5924 -238 790 239 23 103 chr4 17168633 17168984 -167119678 - L1MD2 LINE L1 -19 6340 6018 393 59 0 0 chr4 17168996 17169047 -167119615 - L1PA13 LINE L1 -21 6142 6092 2082 214 76 78 chr4 17169055 17169132 -167119530 - L1MD2 LINE L1 -371 5988 5912 2044 131 0 0 chr4 17169132 17169414 -167119248 + AluSx SINE Alu 1 282 -30 2082 214 76 78 chr4 17169414 17169447 -167119215 - L1MD2 LINE L1 -447 5912 5880 180 0 0 0 chr4 17169447 17169467 -167119195 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2082 214 76 78 chr4 17169467 17170332 -167118330 - L1MD2 LINE L1 -479 5880 5016 1132 220 4 0 chr4 17170419 17170646 -167118016 - L1MB5 LINE L1 -59 6115 5888 955 122 30 25 chr4 17170758 17170955 -167117707 - L1MA4 LINE L1 0 6300 6103 1754 256 43 24 chr4 17170963 17171251 -167117411 - L1MD2 LINE L1 -1128 5018 4737 1640 47 51 68 chr4 17171251 17171486 -167117176 + AluY SINE Alu 70 300 -11 1754 256 43 24 chr4 17171486 17171909 -167116753 - L1MD2 LINE L1 -1409 4737 4293 299 234 21 0 chr4 17172001 17172095 -167116567 + L1M4 LINE L1 4729 4824 -1322 432 288 171 44 chr4 17172175 17172419 -167116243 + L1M4 LINE L1 4876 5088 -1058 2277 112 0 0 chr4 17172419 17172722 -167115940 + AluSx SINE Alu 2 304 -8 432 288 171 44 chr4 17172722 17172887 -167115775 + L1M4 LINE L1 5088 5337 -809 228 240 10 50 chr4 17173097 17173197 -167115465 + A-rich Low_complexity Low_complexity 4 99 0 540 361 119 5 chr4 17173282 17173709 -167114953 - HAL1 LINE L1 -927 1580 1105 4123 85 27 2 chr4 17174916 17175504 -167113158 - L1PA13 LINE L1 -12 6151 5549 1365 220 74 15 chr4 17175919 17176255 -167112407 + MLT1A1 LTR MaLR 2 357 -8 288 328 57 25 chr4 17176263 17176385 -167112277 - MIR SINE MIR -86 176 51 255 374 88 12 chr4 17176614 17176785 -167111877 - MIR SINE MIR -78 184 1 477 282 48 71 chr4 17176905 17177242 -167111420 + L3 LINE CR1 606 934 -643 303 326 11 0 chr4 17178425 17178514 -167110148 - L2 LINE L2 -49 3223 3134 275 368 64 0 chr4 17179974 17180099 -167108563 - L2 LINE L2 -2 3270 3138 397 298 0 9 chr4 17180212 17180326 -167108336 - L2 LINE L2 -12 3301 3189 189 0 0 0 chr4 17180917 17180938 -167107724 + (T)n Simple_repeat Simple_repeat 1 21 0 2487 177 5 108 chr4 17181264 17181836 -167106826 + MLT2B1 LTR ERVL 8 520 0 181 350 164 23 chr4 17182298 17182475 -167106187 + L2 LINE L2 3040 3241 -31 196 300 229 0 chr4 17182985 17183055 -167105607 + MIR SINE MIR 61 146 -116 2358 81 3 0 chr4 17183141 17183464 -167105198 - L1PA13 LINE L1 -4 6159 5836 411 292 102 35 chr4 17183613 17183839 -167104823 - MIR SINE MIR -14 248 8 204 205 0 0 chr4 17184755 17184794 -167103868 + (CA)n Simple_repeat Simple_repeat 1 39 0 228 282 42 14 chr4 17185099 17185170 -167103492 - L2 LINE L2 0 3313 3241 185 302 0 0 chr4 17185467 17185510 -167103152 + L2 LINE L2 3200 3242 -30 2252 105 0 6 chr4 17185855 17186170 -167102492 - AluSq SINE Alu 0 313 1 441 304 84 36 chr4 17186982 17187232 -167101430 + MIR SINE MIR 1 262 0 588 279 93 49 chr4 17187300 17187563 -167101099 + MLT1G1 LTR MaLR 52 292 -250 1678 184 19 77 chr4 17187563 17187977 -167100685 - MLT1B LTR MaLR 0 390 1 588 279 93 49 chr4 17187977 17188001 -167100661 + MLT1G1 LTR MaLR 292 313 -229 361 149 9 114 chr4 17188096 17188210 -167100452 - MLT2B1 LTR ERVL 0 520 419 409 218 11 0 chr4 17188247 17188334 -167100328 + MLT1G1 LTR MaLR 500 587 -8 2501 136 0 36 chr4 17189661 17190080 -167098582 - L1P LINE L1 -2318 3828 3425 1053 64 36 0 chr4 17190080 17190219 -167098443 + L1PA11 LINE L1 6028 6172 -2 194 326 67 0 chr4 17191149 17191238 -167097424 + L2 LINE L2 3153 3247 -25 361 241 19 123 chr4 17191240 17191311 -167097351 - MLT1L LTR MaLR -4 611 534 2167 124 12 3 chr4 17191311 17191649 -167097013 + L1PA13 LINE L1 5814 6154 -9 361 241 19 123 chr4 17191649 17191789 -167096873 - MLT1L LTR MaLR -81 534 422 534 118 0 0 chr4 17192103 17192205 -167096457 + (TCTA)n Simple_repeat Simple_repeat 1 102 0 208 322 115 0 chr4 17192292 17192379 -167096283 + L2 LINE L2 2608 2704 -610 290 119 0 0 chr4 17192599 17192641 -167096021 - Alu SINE Alu -257 42 1 305 175 53 105 chr4 17193714 17193828 -167094834 + L1 LINE L1 3618 3725 -2421 821 252 128 0 chr4 17193954 17194180 -167094482 - MIR SINE MIR 0 262 8 320 278 232 21 chr4 17194229 17194695 -167093967 - MLT1G1 LTR MaLR 0 555 47 928 123 7 7 chr4 17194761 17194907 -167093755 + Tigger5 DNA MER2_type 2178 2323 0 286 242 11 22 chr4 17195048 17195139 -167093523 - L1MC4a LINE L1 -1841 5967 5878 271 280 12 23 chr4 17195164 17195238 -167093424 + GA-rich Low_complexity Low_complexity 1 74 -381 2353 141 6 3 chr4 17195238 17195601 -167093061 - THE1B LTR MaLR 0 364 1 271 280 12 23 chr4 17195601 17195625 -167093037 + GA-rich Low_complexity Low_complexity 74 455 0 240 257 62 9 chr4 17195680 17195793 -167092869 + L1ME4a LINE L1 5997 6115 -6 208 241 133 12 chr4 17197680 17197763 -167090899 + MIR3 SINE MIR 3 95 -113 290 318 55 69 chr4 17198342 17198631 -167090031 + L2 LINE L2 2824 3108 -205 230 359 28 14 chr4 17198732 17198874 -167089788 + MLT1K LTR MaLR 100 243 -345 192 135 0 0 chr4 17199018 17199055 -167089607 + (TG)n Simple_repeat Simple_repeat 2 38 0 361 304 67 15 chr4 17199211 17199346 -167089316 + L2 LINE L2 3172 3313 0 2430 84 0 0 chr4 17199548 17199846 -167088816 + AluY SINE Alu 1 298 -13 216 345 97 28 chr4 17199991 17200136 -167088526 - MIR3 SINE MIR 0 208 54 600 164 0 0 chr4 17200191 17200301 -167088361 + CT-rich Low_complexity Low_complexity 3 112 0 21 0 0 0 chr4 17201160 17201181 -167087481 + AT_rich Low_complexity Low_complexity 1 21 0 306 310 124 0 chr4 17201861 17201990 -167086672 + MIR SINE MIR 75 219 -43 21 0 0 0 chr4 17202449 17202470 -167086192 + AT_rich Low_complexity Low_complexity 1 21 0 1515 225 36 61 chr4 17202640 17203196 -167085466 + L1MD2 LINE L1 5449 5990 -369 670 224 102 38 chr4 17203222 17203486 -167085176 + L1MD2 LINE L1 6078 6358 -1 333 68 0 0 chr4 17203926 17203970 -167084692 + (CA)n Simple_repeat Simple_repeat 2 45 0 356 248 111 8 chr4 17204230 17204347 -167084315 - L2 LINE L2 0 3313 3185 996 226 62 103 chr4 17205675 17205977 -167082685 + LTR16B LTR ERVL 7 285 -179 1666 26 0 0 chr4 17205977 17206172 -167082490 - L1PA2 LINE L1 -2 6153 5959 996 226 62 103 chr4 17206172 17206337 -167082325 + LTR16B LTR ERVL 285 455 -9 2276 96 0 10 chr4 17206478 17206779 -167081883 + AluSg SINE Alu 1 298 -12 455 306 115 11 chr4 17207137 17207320 -167081342 + MIR SINE MIR 18 219 -43 183 322 41 8 chr4 17207399 17207520 -167081142 - L2 LINE L2 -78 3235 3111 198 302 28 38 chr4 17207541 17207647 -167081015 - L2 LINE L2 -280 2992 2888 378 275 165 46 chr4 17207948 17208070 -167080592 + MIR SINE MIR 19 125 -137 2168 114 7 0 chr4 17208070 17208369 -167080293 + AluSq SINE Alu 1 301 -12 378 275 165 46 chr4 17208369 17208464 -167080198 + MIR SINE MIR 125 262 0 350 301 8 32 chr4 17210120 17210243 -167078419 - MIR SINE MIR -16 246 127 331 349 72 5 chr4 17210915 17211110 -167077552 - MIR SINE MIR -24 238 31 5686 66 4 0 chr4 17211252 17212024 -167076638 - L1PA7 LINE L1 -8 6146 5372 6765 65 4 72 chr4 17212034 17213065 -167075597 - L1PA7 LINE L1 -3 6151 5147 779 94 0 0 chr4 17213080 17213186 -167075476 + L1P3 LINE L1 15 120 -6341 227 227 93 67 chr4 17213304 17213379 -167075283 - MIR SINE MIR -184 78 2 390 313 118 30 chr4 17213388 17213720 -167074942 - L2 LINE L2 -1340 1974 1614 24 53 0 0 chr4 17214320 17214358 -167074304 + AT_rich Low_complexity Low_complexity 1 38 0 1897 230 82 22 chr4 17214362 17215087 -167073575 + L1ME2 LINE L1 5237 6011 -153 694 197 71 0 chr4 17215100 17215227 -167073435 - FRAM SINE Alu -20 156 21 180 97 0 0 chr4 17215275 17215306 -167073356 + (TG)n Simple_repeat Simple_repeat 2 32 0 291 268 24 12 chr4 17215465 17215547 -167073115 - L2 LINE L2 -5 3267 3185 225 204 56 0 chr4 17215802 17215856 -167072806 - MLT1A2 LTR MaLR 0 390 334 246 62 0 0 chr4 17215856 17215888 -167072774 + (CA)n Simple_repeat Simple_repeat 2 33 0 3182 105 4 21 chr4 17215902 17216379 -167072283 - L1PA8A LINE L1 -1 6130 5662 1220 113 0 0 chr4 17216399 17216585 -167072077 - L1PA8A LINE L1 -1817 4329 4144 * 23973 149 21 13 chr4 17216583 17221767 -167066895 - L1PA8A LINE L1 -455 5991 731 658 214 21 7 chr4 17221786 17221931 -167066731 - MLT1A2 LTR MaLR -227 147 1 21 0 0 0 chr4 17222012 17222033 -167066629 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr4 17222115 17222157 -167066505 + AT_rich Low_complexity Low_complexity 1 42 0 1206 199 70 35 chr4 17222609 17222950 -167065712 - MLT1A2 LTR MaLR -20 354 2 210 297 154 0 chr4 17223161 17223308 -167065354 - MIR SINE MIR -43 219 49 369 293 32 70 chr4 17223655 17223812 -167064850 - MIR3 SINE MIR -39 169 19 255 246 73 55 chr4 17224257 17224367 -167064295 - L3 LINE CR1 -110 1467 1356 230 211 29 136 chr4 17224464 17224580 -167064082 - MIR SINE MIR -65 143 40 1923 132 0 74 chr4 17224629 17224954 -167063708 - AluSc SINE Alu -8 301 1 447 304 166 16 chr4 17224961 17225208 -167063454 + MLT1J2 LTR MaLR 36 319 -131 364 320 0 47 chr4 17225659 17225831 -167062831 + LTR16A LTR ERVL 175 338 -112 23 54 0 0 chr4 17225859 17225896 -167062766 + AT_rich Low_complexity Low_complexity 1 37 0 1217 261 7 74 chr4 17226167 17226715 -167061947 + MLT2B1 LTR ERVL 3 512 -42 2452 272 37 12 chr4 17226778 17227639 -167061023 + ERVL-B1 LTR ERVL 28 960 -4761 210 404 19 10 chr4 17227978 17228082 -167060580 + L2 LINE L2 3116 3220 -52 289 338 133 23 chr4 17228365 17228756 -167059906 + L2 LINE L2 2520 2953 -361 231 274 0 0 chr4 17228908 17228970 -167059692 + L2 LINE L2 3206 3267 -5 195 42 0 0 chr4 17230110 17230134 -167058528 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2068 115 0 4 chr4 17230140 17230418 -167058244 - AluSq SINE Alu -36 277 1 541 206 65 0 chr4 17230788 17230895 -167057767 + MIR SINE MIR 116 229 -33 412 348 103 13 chr4 17231177 17231410 -167057252 + L2 LINE L2 2553 2806 -508 609 141 50 0 chr4 17231681 17231802 -167056860 - Ricksha DNA DNA -7 3247 3121 4759 135 27 32 chr4 17231804 17232649 -167056013 - Ricksha DNA DNA -1104 2142 1302 2039 114 29 109 chr4 17232652 17233100 -167055562 - Ricksha DNA DNA -2593 653 242 362 244 0 0 chr4 17233114 17233192 -167055470 - Ricksha DNA DNA -1078 103 26 198 0 0 0 chr4 17233557 17233579 -167055083 + (ATTTG)n Simple_repeat Simple_repeat 2 23 0 5867 95 11 2 chr4 17233579 17235168 -167053494 - L1PA10 LINE L1 -19 6149 4536 181 262 81 58 chr4 17235260 17235432 -167053230 + L2 LINE L2 3113 3288 -25 315 262 10 7 chr4 17236093 17236184 -167052478 + MIR SINE MIR 52 144 -64 431 275 145 18 chr4 17236195 17236471 -167052191 + MER46C DNA MER2_type 1 311 -27 191 154 13 51 chr4 17237762 17237840 -167050822 + A-rich Low_complexity Low_complexity 4 78 0 230 329 24 12 chr4 17237881 17237963 -167050699 + L2 LINE L2 1845 1927 -1387 1484 271 138 6 chr4 17238029 17238545 -167050117 + MLT1E LTR MaLR 10 593 0 345 244 61 26 chr4 17238546 17238661 -167050001 + MIR SINE MIR 86 204 -58 342 125 86 16 chr4 17238661 17238789 -167049873 + (TA)n Simple_repeat Simple_repeat 1 137 0 198 250 241 9 chr4 17239219 17239327 -167049335 - MIR SINE MIR -28 234 102 667 276 70 5 chr4 17239329 17239543 -167049119 + MIR SINE MIR 2 229 -33 236 164 55 0 chr4 17239604 17239659 -167049003 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 21 0 0 0 chr4 17242975 17242996 -167045666 + AT_rich Low_complexity Low_complexity 1 21 0 283 234 31 47 chr4 17243230 17243358 -167045304 - L1M4 LINE L1 -1209 4937 4812 634 302 85 43 chr4 17243441 17244882 -167043780 - L1MEc LINE L1 -4784 1612 111 331 322 164 6 chr4 17245707 17245878 -167042784 + MIR SINE MIR 49 246 -16 228 269 0 0 chr4 17247100 17247152 -167041510 + L2 LINE L2 3210 3261 -52 618 211 59 7 chr4 17247425 17247577 -167041085 + FRAM SINE Alu 1 40 0 7726 157 14 41 chr4 17247615 17248938 -167039724 - HSMAR1 DNA Mariner 0 1287 1 213 205 0 0 chr4 17249251 17249290 -167039372 - L2 LINE L2 -4 3309 3271 306 260 146 10 chr4 17249345 17249441 -167039221 - L2 LINE L2 -12 3301 3193 2410 30 40 10 chr4 17249470 17249766 -167038896 + AluY SINE Alu 1 305 -6 835 199 6 19 chr4 17250138 17250294 -167038368 - FRAM SINE Alu -23 153 1 198 283 0 0 chr4 17251138 17251184 -167037478 + L2 LINE L2 3267 3312 -1 264 324 39 10 chr4 17251599 17251701 -167036961 + MIR SINE MIR 106 210 -52 24 77 0 0 chr4 17251918 17251970 -167036692 + AT_rich Low_complexity Low_complexity 1 52 0 622 197 49 0 chr4 17253195 17253317 -167035345 + FLAM_C SINE Alu 3 130 -3 4617 232 12 24 chr4 17253319 17254707 -167033955 + L1PA15 LINE L1 1223 2610 -4187 11480 204 38 40 chr4 17255312 17259526 -167029136 + L1PA15 LINE L1 2608 6813 -3 426 294 135 12 chr4 17259925 17260095 -167028567 + L2 LINE L2 2871 3061 -252 5937 150 96 8 chr4 17260102 17261193 -167027469 + Tigger1 DNA MER2_type 2 1188 -1230 228 241 19 0 chr4 17261763 17261817 -167026845 - MIR SINE MIR -25 237 183 334 230 153 90 chr4 17261858 17262080 -167026582 + MER106A DNA MER1_type 1 236 0 309 272 22 22 chr4 17262381 17262473 -167026189 - MIR SINE MIR -71 191 100 1358 284 121 15 chr4 17262774 17263396 -167025266 - L1ME3A LINE L1 -210 5960 5282 292 342 40 40 chr4 17263461 17263739 -167024923 - L1MC/D LINE L1 -2002 5806 5529 323 272 129 65 chr4 17264761 17265040 -167023622 + L2 LINE L2 1613 1909 -1405 414 317 58 64 chr4 17265147 17265857 -167022805 + L2 LINE L2 2538 3289 -24 273 283 157 60 chr4 17266055 17266355 -167022307 + MLT1H LTR MaLR 23 351 -198 553 281 41 81 chr4 17266699 17267061 -167021601 - L1ME3A LINE L1 -2941 3205 2865 661 233 184 45 chr4 17267190 17267430 -167021232 + MER74B LTR ERVL 124 406 -216 1714 211 30 19 chr4 17267430 17267791 -167020871 - MLT1A1 LTR MaLR 0 365 1 661 233 184 45 chr4 17267791 17267816 -167020846 + MER74B LTR ERVL 406 426 -196 2321 121 50 0 chr4 17268175 17268538 -167020124 + L1PA11 LINE L1 5792 6172 -2 26 98 0 0 chr4 17268649 17268731 -167019931 + AT_rich Low_complexity Low_complexity 1 82 0 21 36 0 0 chr4 17269091 17269119 -167019543 + AT_rich Low_complexity Low_complexity 1 28 0 579 176 7 18 chr4 17269329 17269602 -167019060 + (TA)n Simple_repeat Simple_repeat 1 270 0 1627 223 0 6 chr4 17269686 17270000 -167018662 - AluJo SINE Alu 0 312 1 10997 197 19 8 chr4 17270484 17274002 -167014660 - L1PB1 LINE L1 0 6867 3319 2103 89 3 92 chr4 17274002 17274338 -167014324 - AluSg SINE Alu -2 308 3 33615 42 32 2 chr4 17274341 17274358 -167014304 - L1P LINE L1 -1784 4362 4347 9020 34 0 0 chr4 17274358 17276222 -167012440 - L1PA2 LINE L1 0 6155 4293 33615 42 32 2 chr4 17276222 17280435 -167008227 - L1P LINE L1 -1799 4347 3 12296 124 95 27 chr4 17280436 17282963 -167005699 - L1PB1 LINE L1 -3535 3327 625 1032 154 16 0 chr4 17282955 17283137 -167005525 - L1PB1 LINE L1 -6663 200 16 * 30 97 0 0 chr4 17283285 17283378 -167005284 + AT_rich Low_complexity Low_complexity 1 93 0 223 359 0 0 chr4 17283564 17283628 -167005034 + L2 LINE L2 3206 3269 -3 840 283 36 83 chr4 17284238 17284959 -167003703 + L2 LINE L2 2611 3313 0 297 296 113 35 chr4 17284975 17285117 -167003545 - MIR SINE MIR -12 250 98 932 181 0 0 chr4 17285156 17285300 -167003362 + FRAM SINE Alu 1 141 -35 29 28 0 0 chr4 17285305 17285341 -167003321 + AT_rich Low_complexity Low_complexity 1 36 0 1364 225 100 42 chr4 17285862 17286320 -167002342 - MLT1D LTR MaLR 0 505 21 379 317 68 44 chr4 17286536 17286645 -167002017 - MIR SINE MIR -39 223 105 21143 32 1 8 chr4 17286645 17290023 -166998639 + L1PA4 LINE L1 2798 6155 0 379 317 68 44 chr4 17290023 17290118 -166998544 - MIR SINE MIR -157 105 14 403 266 43 137 chr4 17291093 17291326 -166997336 - MIR SINE MIR -13 249 39 1279 233 129 35 chr4 17291658 17292061 -166996601 + MSTB2 LTR MaLR 15 455 -2 180 77 0 0 chr4 17292959 17292985 -166995677 + (CA)n Simple_repeat Simple_repeat 1 26 0 23 0 0 0 chr4 17293791 17293814 -166994848 + AT_rich Low_complexity Low_complexity 1 23 0 750 288 145 78 chr4 17294333 17294351 -166994311 - MLT1E LTR MaLR 0 593 578 3353 194 80 0 chr4 17294351 17295030 -166993632 + MER44D DNA MER2_type 1 605 0 750 288 145 78 chr4 17295030 17295549 -166993113 - MLT1E LTR MaLR -15 578 20 1939 139 0 29 chr4 17296975 17297284 -166991378 + AluY SINE Alu 1 300 -11 206 293 52 0 chr4 17297793 17297851 -166990811 + MIR SINE MIR 47 107 -155 214 293 0 0 chr4 17297975 17298033 -166990629 + GA-rich Low_complexity Low_complexity 3 60 0 21 0 0 0 chr4 17298527 17298548 -166990114 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 17299414 17299435 -166989227 + AT_rich Low_complexity Low_complexity 1 21 0 456 133 11 22 chr4 17300336 17300426 -166988236 + L1PA13 LINE L1 4447 4535 -1611 5963 96 28 6 chr4 17300437 17301593 -166987069 + L1PA13 LINE L1 4990 6162 -1 1094 221 59 59 chr4 17302359 17302749 -166985913 + MLT1B LTR MaLR 1 390 0 2287 91 3 0 chr4 17302788 17303084 -166985578 - AluY SINE Alu -14 297 1 238 147 118 0 chr4 17303161 17303229 -166985433 - L1ME4a LINE L1 -1 6120 6045 2460 138 36 7 chr4 17304533 17304945 -166983717 + MSTB LTR MaLR 1 424 -2 2016 108 87 0 chr4 17305301 17305578 -166983084 + AluSg SINE Alu 1 301 -9 363 368 77 26 chr4 17305600 17305872 -166982790 + HAL1b LINE L1 397 682 -666 320 358 41 8 chr4 17306335 17306458 -166982204 - L2 LINE L2 0 3272 3146 254 303 34 0 chr4 17306624 17306743 -166981919 + L1ME4a LINE L1 5968 6090 -31 307 354 93 9 chr4 17307076 17307291 -166981371 - L1ME LINE L1 -318 5803 5571 452 347 65 0 chr4 17307315 17307514 -166981148 + MIR SINE MIR 41 252 -10 1194 107 0 11 chr4 17307568 17307745 -166980917 - L1PA2 LINE L1 0 6155 5981 21 0 0 0 chr4 17308488 17308509 -166980153 + AT_rich Low_complexity Low_complexity 1 21 0 366 256 73 107 chr4 17308984 17309218 -166979444 - MIR SINE MIR -24 238 13 199 274 214 24 chr4 17309413 17309497 -166979165 + MIR SINE MIR 29 128 -134 2141 124 0 25 chr4 17309515 17309830 -166978832 + AluSx SINE Alu 1 307 -5 186 301 133 12 chr4 17309864 17309947 -166978715 + MIR SINE MIR 159 251 -11 1621 150 95 4 chr4 17311739 17312012 -166976650 - AluJb SINE Alu -14 298 1 318 292 46 39 chr4 17312645 17312775 -166975887 + MIR SINE MIR 97 227 -35 325 202 0 36 chr4 17312778 17312862 -166975800 - MLT1J2 LTR MaLR -328 122 42 324 0 0 0 chr4 17313450 17313486 -166975176 + (CA)n Simple_repeat Simple_repeat 2 37 0 220 339 42 30 chr4 17313818 17313983 -166974679 - MIR SINE MIR -28 234 68 428 296 20 1 chr4 17314285 17314423 -166974239 + MIR SINE MIR 25 162 -50 400 314 9 0 chr4 17314764 17314869 -166973793 + MER81 DNA DNA 9 114 0 574 280 37 50 chr4 17316184 17316533 -166972129 - MLT1H1 LTR MaLR -214 376 32 306 370 39 8 chr4 17316601 17316728 -166971934 - HAL1 LINE L1 -1644 863 733 1698 128 49 85 chr4 17317286 17317675 -166970987 - THE1C LTR MaLR 0 375 1 2089 143 0 0 chr4 17318298 17318599 -166970063 - AluSx SINE Alu -11 301 1 314 307 71 61 chr4 17319140 17319240 -166969422 - HAL1b LINE L1 -915 433 335 1889 168 84 25 chr4 17319240 17319644 -166969018 - MSTA LTR MaLR 0 428 1 314 307 71 61 chr4 17319644 17319755 -166968907 - HAL1b LINE L1 -1013 335 220 205 188 47 31 chr4 17319867 17319931 -166968731 + T-rich Low_complexity Low_complexity 2 66 0 322 344 97 36 chr4 17320974 17321530 -166967132 + L2 LINE L2 1891 2480 -834 182 314 92 60 chr4 17321620 17321805 -166966857 + L2 LINE L2 2613 2803 -511 327 263 0 0 chr4 17322568 17322644 -166966018 - MIR SINE MIR -108 154 79 243 0 0 0 chr4 17323084 17323111 -166965551 + (A)n Simple_repeat Simple_repeat 1 27 0 436 273 93 29 chr4 17323709 17323881 -166964781 - MIR SINE MIR -62 200 18 1779 136 0 78 chr4 17324667 17324998 -166963664 - AluY SINE Alu -6 305 1 222 37 0 0 chr4 17325510 17325537 -166963125 + (TTA)n Simple_repeat Simple_repeat 1 27 0 1640 223 0 3 chr4 17325552 17325839 -166962823 - AluJo SINE Alu -26 286 1 690 315 62 10 chr4 17326219 17326527 -166962135 - MLT1H LTR MaLR 0 549 226 690 192 35 17 chr4 17326524 17326696 -166961966 - MLT1H LTR MaLR -361 188 14 982 296 80 33 chr4 17326951 17327404 -166961258 - L2 LINE L2 -8 3305 2832 707 253 11 11 chr4 17327432 17327610 -166961052 + MER58A DNA MER1_type 47 224 0 569 284 127 22 chr4 17327613 17327881 -166960781 - L2 LINE L2 -507 2807 2512 3697 76 2 0 chr4 17328179 17328664 -166959998 - L1PA8 LINE L1 -10 6162 5677 380 298 121 42 chr4 17328740 17328955 -166959707 + MIR SINE MIR 20 251 -11 357 350 25 12 chr4 17330166 17330329 -166958333 - L1ME LINE L1 -348 5773 5609 319 322 160 21 chr4 17331148 17331480 -166957182 + L2 LINE L2 2595 2972 -342 238 264 0 0 chr4 17331984 17332037 -166956625 + (TG)n Simple_repeat Simple_repeat 2 54 0 396 205 12 12 chr4 17332342 17332425 -166956237 - MIR3 SINE MIR -54 154 72 256 380 83 32 chr4 17332908 17333221 -166955441 - L2 LINE L2 -10 3262 2934 201 350 0 12 chr4 17333998 17334078 -166954584 - MIR SINE MIR -75 187 109 40875 45 10 2 chr4 17334526 17340634 -166948028 + L1PA4 LINE L1 7 6155 0 936 236 123 36 chr4 17340692 17341026 -166947636 - MLT1A1 LTR MaLR -2 363 1 2410 98 0 0 chr4 17342142 17342447 -166946215 + AluSc SINE Alu 1 305 -4 259 294 0 87 chr4 17342960 17343052 -166945610 - L2 LINE L2 -2 3311 3228 221 248 46 17 chr4 17343063 17343142 -166945520 + MIR SINE MIR 20 109 -99 353 180 0 0 chr4 17343142 17343203 -166945459 + AluSc SINE Alu 228 288 -11 830 279 68 4 chr4 17344056 17344293 -166944369 - MIR SINE MIR -7 255 4 188 336 110 34 chr4 17344634 17344780 -166943882 + L2 LINE L2 3083 3239 -33 225 274 0 57 chr4 17344813 17344919 -166943743 + MIR SINE MIR 117 216 -46 356 331 23 12 chr4 17345288 17345446 -166943216 - MIR SINE MIR -12 196 32 508 275 135 35 chr4 17346629 17347170 -166941492 + L1ME4a LINE L1 5516 6110 -11 21 36 0 0 chr4 17347170 17347198 -166941464 + AT_rich Low_complexity Low_complexity 1 28 0 2298 69 0 3 chr4 17347913 17348217 -166940445 - L1PA8 LINE L1 -7 6165 5863 2208 129 7 0 chr4 17348393 17348702 -166939960 - AluSx SINE Alu -1 311 1 2149 91 10 3 chr4 17348887 17349184 -166939478 - AluSq SINE Alu -14 299 1 372 43 0 0 chr4 17349409 17349455 -166939207 + (TG)n Simple_repeat Simple_repeat 1 46 0 324 330 25 0 chr4 17349586 17349704 -166938958 - L2 LINE L2 0 3313 3193 25 0 0 0 chr4 17350004 17350029 -166938633 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 17350666 17350688 -166937974 + AT_rich Low_complexity Low_complexity 1 22 0 2139 133 0 9 chr4 17351510 17351825 -166936837 - AluSx SINE Alu 0 312 1 2060 165 31 11 chr4 17351963 17352345 -166936317 + MLT1B LTR MaLR 1 390 0 363 244 13 0 chr4 17352396 17352474 -166936188 - MIR SINE MIR -20 242 164 307 203 29 0 chr4 17352476 17352545 -166936117 + MIR SINE MIR 180 250 -12 341 43 21 0 chr4 17353876 17353923 -166934739 + (TG)n Simple_repeat Simple_repeat 1 48 0 3518 67 13 0 chr4 17354457 17354918 -166933744 - L1PA13 LINE L1 0 6163 5697 274 167 33 17 chr4 17355191 17355251 -166933411 - MIR SINE MIR -105 157 97 252 374 61 6 chr4 17355440 17355603 -166933059 - MIR SINE MIR -78 184 13 200 342 68 26 chr4 17355676 17355793 -166932869 + L2 LINE L2 3183 3304 -9 244 338 181 6 chr4 17356412 17356572 -166932090 + L2 LINE L2 3076 3263 -9 1052 232 88 47 chr4 17356636 17356976 -166931686 - MLT2B1 LTR ERVL -76 444 91 1927 131 38 0 chr4 17356979 17357322 -166931340 + MER4D LTR ERV1 1 356 -516 1785 132 124 47 chr4 17357328 17357714 -166930948 + MSTA LTR MaLR 13 428 0 * 3177 128 6 34 chr4 17357714 17358250 -166930412 + MER4D LTR ERV1 352 872 0 422 198 0 0 chr4 17358250 17358341 -166930321 - MLT2B1 LTR ERVL -463 91 1 237 275 67 67 chr4 17358832 17359010 -166929652 - MIR SINE MIR -50 212 35 260 284 95 52 chr4 17359185 17359301 -166929361 + MIR3 SINE MIR 37 157 -51 390 21 0 0 chr4 17359308 17359355 -166929307 + (TG)n Simple_repeat Simple_repeat 1 47 0 232 342 112 0 chr4 17359473 17359634 -166929028 + MIR SINE MIR 83 261 -1 288 312 26 19 chr4 17360833 17360982 -166927680 + MIR3 SINE MIR 8 155 -68 487 372 41 4 chr4 17361171 17361413 -166927249 + MIR SINE MIR 12 262 0 25 0 0 0 chr4 17361536 17361561 -166927101 + AT_rich Low_complexity Low_complexity 1 25 0 7270 29 3 0 chr4 17362689 17363551 -166925111 + L1PA4 LINE L1 5290 6154 -1 220 409 70 9 chr4 17367029 17367144 -166921518 + L2 LINE L2 2764 2885 -429 787 277 75 46 chr4 17367873 17368220 -166920442 + L2 LINE L2 2941 3297 -16 217 322 0 0 chr4 17368245 17368304 -166920358 - L2 LINE L2 -75 3197 3139 576 301 41 18 chr4 17368522 17368741 -166919921 + MIR SINE MIR 35 258 -4 849 308 80 28 chr4 17368765 17369424 -166919238 - L2 LINE L2 -20 3293 2579 588 304 40 24 chr4 17370061 17370308 -166918354 - MIR SINE MIR -3 259 9 225 286 57 0 chr4 17371312 17371382 -166917280 - L2 LINE L2 -3 3269 3196 1200 111 0 0 chr4 17371446 17371626 -166917036 + (TA)n Simple_repeat Simple_repeat 1 180 0 229 152 0 0 chr4 17371645 17371691 -166916971 - LTR66 LTR ERVL -171 439 394 444 208 0 0 chr4 17371693 17371789 -166916873 + (TA)n Simple_repeat Simple_repeat 2 97 0 436 252 50 0 chr4 17371790 17371909 -166916753 + MER63A DNA MER1_type 53 177 -33 1808 178 56 16 chr4 17374799 17375175 -166913487 + MSTD LTR MaLR 6 396 0 1034 248 58 60 chr4 17375484 17375884 -166912778 - MLT1D LTR MaLR -106 399 1 217 320 11 34 chr4 17376288 17376466 -166912196 + CT-rich Low_complexity Low_complexity 5 178 0 313 271 24 12 chr4 17376509 17376594 -166912068 + L2 LINE L2 3186 3271 -1 225 352 56 28 chr4 17377492 17377634 -166911028 - MIR SINE MIR -111 151 6 250 335 84 47 chr4 17378402 17378593 -166910069 + MLT1K LTR MaLR 282 479 -109 1742 162 6 61 chr4 17379054 17379413 -166909249 - MER44D DNA MER2_type 0 609 1 366 226 0 89 chr4 17379748 17379872 -166908790 + MLT1I LTR MaLR 295 407 -2 1861 161 0 7 chr4 17380021 17380313 -166908349 - AluSx SINE Alu -22 290 1 423 332 66 26 chr4 17380362 17380588 -166908074 + MIR SINE MIR 8 242 -20 579 133 25 50 chr4 17381857 17381871 -166906791 + MLT1H LTR MaLR 433 446 -103 1414 203 35 46 chr4 17381871 17382240 -166906422 - MLT1A1 LTR MaLR 0 365 1 579 133 25 50 chr4 17382240 17382345 -166906317 + MLT1H LTR MaLR 446 549 0 403 322 9 0 chr4 17382420 17382535 -166906127 - L2 LINE L2 -1 3312 3197 34 42 0 0 chr4 17382620 17382668 -166905994 + AT_rich Low_complexity Low_complexity 1 48 0 2805 88 28 2 chr4 17382933 17383329 -166905333 + MLT2A2 LTR ERVL 1 406 -47 250 274 12 24 chr4 17383331 17383415 -166905247 + (TATATG)n Simple_repeat Simple_repeat 4 86 0 231 36 0 0 chr4 17383418 17383446 -166905216 + (CA)n Simple_repeat Simple_repeat 2 29 0 311 109 0 0 chr4 17383453 17383499 -166905163 + MLT2A2 LTR ERVL 400 445 -8 278 98 20 0 chr4 17383506 17383557 -166905105 + (TA)n Simple_repeat Simple_repeat 2 53 0 23 33 0 0 chr4 17383819 17383849 -166904813 + AT_rich Low_complexity Low_complexity 1 30 0 983 213 36 23 chr4 17384635 17384856 -166903806 + MER58A DNA MER1_type 1 224 0 347 232 16 80 chr4 17385120 17385245 -166903417 + MLT1H1 LTR MaLR 64 180 -375 374 257 34 136 chr4 17385425 17385580 -166903082 - L2 LINE L2 -107 3165 3034 1636 174 24 17 chr4 17385580 17385867 -166902795 - AluJo SINE Alu -18 294 6 374 257 34 136 chr4 17385867 17385917 -166902745 - L2 LINE L2 -238 3034 2981 200 210 48 0 chr4 17386155 17386217 -166902445 + (TA)n Simple_repeat Simple_repeat 1 65 0 251 330 68 0 chr4 17386282 17386370 -166902292 - L3 LINE CR1 -277 1300 1207 273 329 0 0 chr4 17386438 17386520 -166902142 - L2 LINE L2 -24 3289 3208 199 376 12 0 chr4 17386543 17386628 -166902034 - L3 LINE CR1 -438 1139 1054 413 286 58 23 chr4 17387065 17387236 -166901426 + L3 LINE CR1 1187 1363 -214 603 185 62 23 chr4 17388054 17388221 -166900441 - L1MA9 LINE L1 -7 6284 6125 1597 147 135 18 chr4 17388221 17388555 -166900107 - THE1C LTR MaLR -1 374 2 603 185 62 23 chr4 17388555 17388665 -166899997 - L1MA9 LINE L1 -166 6125 5908 * 1910 224 37 6 chr4 17388643 17389130 -166899532 + L1MA9 LINE L1 5433 5934 -378 341 393 41 7 chr4 17389345 17389635 -166899027 + L2 LINE L2 3014 3313 0 1032 214 54 80 chr4 17390530 17390956 -166897706 + MER96B DNA MER1_type 2 416 -1 476 282 35 7 chr4 17391438 17391580 -166897082 - MIR SINE MIR -31 231 86 3794 152 41 46 chr4 17392298 17393080 -166895582 + LTR1 LTR ERV1 8 785 0 1883 261 45 37 chr4 17393626 17394247 -166894415 + MLT1E2 LTR MaLR 1 626 0 422 378 15 10 chr4 17394373 17394574 -166894088 - MIR SINE MIR -44 218 17 219 313 104 0 chr4 17394714 17394848 -166893814 + L2 LINE L2 2809 2956 -316 303 213 25 0 chr4 17395607 17395687 -166892975 - MER103 DNA DNA -30 136 55 636 241 52 68 chr4 17396180 17396371 -166892291 - MER5A DNA MER1_type -1 188 1 2251 109 0 16 chr4 17396724 17397036 -166891626 - AluSc SINE Alu -2 307 1 232 294 65 0 chr4 17397327 17397419 -166891243 - MLT1J LTR MaLR -319 192 95 198 91 0 0 chr4 17397450 17397483 -166891179 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 395 320 34 34 chr4 17397545 17397867 -166890795 + Charlie7 DNA MER1_type 309 630 -1982 2449 63 0 25 chr4 17398112 17398431 -166890231 + AluY SINE Alu 1 311 0 291 196 112 49 chr4 17398483 17398626 -166890036 + Charlie7 DNA MER1_type 2415 2566 -46 498 251 37 31 chr4 17399457 17399620 -166889042 - MIR SINE MIR -53 209 46 4379 118 49 26 chr4 17401367 17402703 -166885959 - pTR5 LTR ERV1 0 2438 743 530 287 109 4 chr4 17402782 17403012 -166885650 - MER46C DNA MER2_type -4 334 81 959 182 82 106 chr4 17403338 17403717 -166884945 - MLT1A2 LTR MaLR -4 370 1 1118 263 59 18 chr4 17403956 17404430 -166884232 - MLT1G LTR MaLR -3 552 34 24 32 0 0 chr4 17404779 17404810 -166883852 + AT_rich Low_complexity Low_complexity 1 31 0 185 286 18 36 chr4 17404994 17405050 -166883612 - MIR SINE MIR -11 251 197 229 329 13 0 chr4 17405191 17405267 -166883395 + MIR SINE MIR 174 250 -12 636 247 38 71 chr4 17405312 17405412 -166883250 - MIR SINE MIR -12 250 148 2186 176 51 10 chr4 17405412 17405821 -166882841 + MSTB LTR MaLR 1 426 0 636 247 38 71 chr4 17405821 17405959 -166882703 - MIR SINE MIR -114 148 20 1597 195 7 82 chr4 17406080 17406521 -166882141 - MLT2D LTR ERVL -6 408 1 1979 158 0 0 chr4 17407558 17407855 -166880807 + AluSq SINE Alu 1 297 -16 192 125 0 0 chr4 17408363 17408395 -166880267 + (A)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr4 17409049 17409071 -166879591 + AT_rich Low_complexity Low_complexity 1 22 0 1188 259 37 43 chr4 17409333 17409384 -166879278 + MLT1A2 LTR MaLR 1 51 -323 3526 138 47 0 chr4 17409384 17409957 -166878705 + MER4A LTR ERV1 1 600 0 1188 259 37 43 chr4 17409957 17410280 -166878382 + MLT1A2 LTR MaLR 51 373 -1 348 263 48 11 chr4 17412045 17412148 -166876514 + MIR SINE MIR 49 155 -63 25 0 0 0 chr4 17412687 17412712 -166875950 + AT_rich Low_complexity Low_complexity 1 25 0 246 228 0 0 chr4 17415013 17415070 -166873592 + MIR SINE MIR 94 150 -112 243 278 107 47 chr4 17415159 17415328 -166873334 - L2 LINE L2 -40 3273 3095 1407 149 93 17 chr4 17415520 17415822 -166872840 - THE1C LTR MaLR 0 375 51 200 361 93 0 chr4 17416017 17416125 -166872537 + L2 LINE L2 3195 3312 -1 243 288 258 8 chr4 17416597 17416729 -166871933 - MIR SINE MIR -26 236 72 341 145 13 0 chr4 17416881 17416957 -166871705 + CT-rich Low_complexity Low_complexity 2 78 0 22 56 0 0 chr4 17418155 17418191 -166870471 + AT_rich Low_complexity Low_complexity 1 36 0 180 212 0 35 chr4 17418248 17418333 -166870329 + (TATATG)n Simple_repeat Simple_repeat 5 86 0 998 260 32 4 chr4 17419038 17419284 -166869378 + MIR SINE MIR 5 257 -5 3015 74 23 9 chr4 17419753 17420183 -166868479 + MLT2A1 LTR ERVL 1 436 -8 184 401 86 20 chr4 17422007 17422204 -166866458 + L2 LINE L2 2838 3047 -225 401 264 26 90 chr4 17422235 17422390 -166866272 + MER5B DNA MER1_type 26 170 -8 830 235 24 0 chr4 17422481 17422651 -166866011 - MER58A DNA MER1_type -50 174 1 207 200 182 0 chr4 17422887 17422942 -166865720 + MIR3 SINE MIR 134 198 -10 205 152 0 0 chr4 17423421 17423454 -166865208 + CT-rich Low_complexity Low_complexity 1 33 0 327 146 0 0 chr4 17423455 17423510 -166865152 + (CA)n Simple_repeat Simple_repeat 1 55 0 350 299 109 38 chr4 17423536 17423720 -166864942 + MIR SINE MIR 66 262 0 311 329 74 13 chr4 17423731 17423880 -166864782 - MIR SINE MIR -76 186 29 279 293 24 12 chr4 17424055 17424137 -166864525 + MIR3 SINE MIR 115 197 -11 791 245 5 11 chr4 17425157 17425341 -166863321 + MIR SINE MIR 53 235 -27 4783 167 27 15 chr4 17425854 17426058 -166862604 - L1PA16 LINE L1 -5 6161 5961 1758 197 0 3 chr4 17426058 17426353 -166862309 - AluJo SINE Alu -18 294 1 4783 167 27 15 chr4 17426353 17427220 -166861442 - L1PA16 LINE L1 -205 5961 5083 598 320 98 51 chr4 17427686 17428330 -166860332 - L1M4 LINE L1 -1080 5066 4376 2914 13 0 0 chr4 17428330 17428648 -166860014 - AluYb8 SINE Alu 0 318 1 598 320 98 51 chr4 17428648 17428800 -166859862 - L1M4 LINE L1 -1770 4376 4233 25 0 0 0 chr4 17428865 17428890 -166859772 + AT_rich Low_complexity Low_complexity 1 25 0 5246 148 23 25 chr4 17429171 17430741 -166857921 + L1PB1 LINE L1 4587 6143 -8 22 70 0 0 chr4 17430856 17430899 -166857763 + AT_rich Low_complexity Low_complexity 1 43 0 329 335 71 17 chr4 17430934 17431173 -166857489 - L1M4 LINE L1 -2348 3798 3547 1520 248 33 35 chr4 17433075 17433615 -166855047 - L1ME2 LINE L1 -9 6155 5617 2121 112 3 25 chr4 17433625 17433939 -166854723 - AluSx SINE Alu -4 308 2 476 110 70 70 chr4 17433940 17434040 -166854622 - AluSg SINE Alu -173 137 38 185 327 0 0 chr4 17434210 17434262 -166854400 + MIR SINE MIR 86 137 -125 1474 215 24 40 chr4 17434704 17435080 -166853582 - MLT1A2 LTR MaLR -1 373 4 1343 125 5 0 chr4 17436052 17436260 -166852402 + L1PA13 LINE L1 5937 6145 -18 217 295 184 22 chr4 17436271 17436549 -166852113 - L2 LINE L2 -568 2746 2424 372 97 0 0 chr4 17437382 17437444 -166851218 + (TG)n Simple_repeat Simple_repeat 2 63 0 509 30 15 0 chr4 17437455 17437522 -166851140 + (TAGA)n Simple_repeat Simple_repeat 1 68 0 675 272 114 48 chr4 17437892 17438373 -166850289 + LTR33A LTR ERVL 11 523 0 201 108 0 0 chr4 17438678 17438715 -166849947 + (TA)n Simple_repeat Simple_repeat 2 38 0 637 289 248 15 chr4 17438808 17439203 -166849459 - L2 LINE L2 0 3313 2827 340 273 61 0 chr4 17439302 17439434 -166849228 - L1ME LINE L1 -409 5712 5573 1515 234 40 6 chr4 17439518 17439942 -166848720 + MLT1D LTR MaLR 1 480 -25 6257 94 22 0 chr4 17439974 17440906 -166847756 - L1PB1 LINE L1 0 6151 5215 316 228 26 61 chr4 17440925 17441039 -166847623 + MIR SINE MIR 67 176 -86 25 0 0 0 chr4 17441152 17441177 -166847485 + AT_rich Low_complexity Low_complexity 1 25 0 300 111 0 0 chr4 17441269 17441314 -166847348 + (TA)n Simple_repeat Simple_repeat 2 46 0 183 80 0 0 chr4 17441562 17441587 -166847075 + (A)n Simple_repeat Simple_repeat 1 25 0 181 361 16 0 chr4 17442564 17442625 -166846037 - L3 LINE CR1 -102 1475 1414 1927 240 48 112 chr4 17443501 17444036 -166844626 + L1MEc LINE L1 65 482 -5914 378 0 0 0 chr4 17444036 17444078 -166844584 + (TAA)n Simple_repeat Simple_repeat 1 42 0 1927 240 48 112 chr4 17444078 17444748 -166843914 + L1MEc LINE L1 482 1193 -5203 315 200 263 0 chr4 17444769 17444849 -166843813 - MER58A DNA MER1_type -5 102 2 233 337 81 35 chr4 17445594 17445766 -166842896 - L3 LINE CR1 -1 1576 1397 235 322 34 34 chr4 17445946 17446047 -166842615 + MIR SINE MIR 56 156 -106 657 258 50 11 chr4 17446047 17446229 -166842433 - MER5A DNA MER1_type 0 189 1 1771 264 53 49 chr4 17446693 17447452 -166841210 - LTR41 LTR ERVL -10 763 2 205 275 0 0 chr4 17447507 17447547 -166841115 - MIR SINE MIR -23 239 200 1059 297 63 14 chr4 17448375 17448742 -166839920 - LTR16A LTR ERVL -12 438 54 448 349 37 4 chr4 17449184 17449425 -166839237 - ERVL LTR ERVL -740 5024 4776 945 300 60 70 chr4 17449500 17450080 -166838582 + L2 LINE L2 2731 3312 -1 187 318 70 39 chr4 17450671 17450800 -166837862 - L2 LINE L2 -12 3301 3169 225 0 0 0 chr4 17450972 17450997 -166837665 + (T)n Simple_repeat Simple_repeat 1 25 0 332 311 37 30 chr4 17451112 17451247 -166837415 - MIR SINE MIR 0 262 127 701 311 34 8 chr4 17451250 17451517 -166837145 - LTR16B LTR ERVL -3 461 188 318 109 0 0 chr4 17451521 17451567 -166837095 - LTR16B LTR ERVL -418 46 1 229 275 198 0 chr4 17451567 17451658 -166837004 - MIR SINE MIR -131 131 23 707 100 0 0 chr4 17452275 17452375 -166836287 + AluSc SINE Alu 193 292 -17 330 315 101 0 chr4 17452471 17452620 -166836042 - MIR SINE MIR -77 185 22 283 232 0 49 chr4 17453797 17453879 -166834783 + MIR SINE MIR 77 154 -108 555 263 65 129 chr4 17453962 17454294 -166834368 + L2 LINE L2 2389 2741 -573 2158 120 0 0 chr4 17454294 17454593 -166834069 + AluSg SINE Alu 1 299 -11 555 263 65 129 chr4 17454593 17454736 -166833926 + L2 LINE L2 2741 2827 -487 2491 71 0 0 chr4 17454736 17455032 -166833630 + AluY SINE Alu 1 296 -15 555 263 65 129 chr4 17455032 17455096 -166833566 + L2 LINE L2 2827 2894 -420 189 0 0 0 chr4 17455146 17455167 -166833495 + (T)n Simple_repeat Simple_repeat 1 21 0 257 329 20 59 chr4 17455169 17455321 -166833341 + L2 LINE L2 2898 3043 -270 2643 196 33 113 chr4 17455322 17456799 -166831863 - L1MA8 LINE L1 -119 6172 4795 1251 281 96 16 chr4 17456810 17457247 -166831415 - L1M3d LINE L1 -5418 473 2 245 307 47 68 chr4 17457263 17457455 -166831207 + L2 LINE L2 3050 3237 -76 282 230 44 0 chr4 17457723 17457836 -166830826 + (TA)n Simple_repeat Simple_repeat 2 119 0 216 0 0 0 chr4 17457837 17457861 -166830801 + (CA)n Simple_repeat Simple_repeat 1 24 0 379 341 12 38 chr4 17457892 17458082 -166830580 - MIR3 SINE MIR -22 186 1 1943 124 43 35 chr4 17458974 17459346 -166829316 + THE1C LTR MaLR 1 375 0 243 203 0 0 chr4 17459567 17459626 -166829036 + (CA)n Simple_repeat Simple_repeat 2 60 0 1962 218 77 9 chr4 17459639 17460079 -166828583 - MLT2B1 LTR ERVL -50 470 1 332 264 26 39 chr4 17460717 17460872 -166827790 + A-rich Low_complexity Low_complexity 1 153 0 426 326 81 46 chr4 17461081 17461563 -166827099 - L1MC4a LINE L1 -1883 5925 5427 2385 100 0 0 chr4 17462009 17462319 -166826343 - AluSg SINE Alu 0 310 1 1708 146 9 54 chr4 17462710 17463025 -166825637 - AluSx SINE Alu -11 301 1 32 26 0 0 chr4 17463390 17463429 -166825233 + AT_rich Low_complexity Low_complexity 1 39 0 2186 127 3 3 chr4 17463483 17463791 -166824871 - AluSg SINE Alu -2 308 1 388 258 13 44 chr4 17463791 17463940 -166824722 + L2 LINE L2 1820 1965 -1349 1658 146 16 12 chr4 17464179 17464433 -166824229 - AluSx SINE Alu -15 297 43 191 381 95 0 chr4 17464441 17464546 -166824116 + L2 LINE L2 2207 2321 -993 245 332 106 70 chr4 17464610 17465008 -166823654 + L2 LINE L2 2805 3216 -56 241 398 11 0 chr4 17465803 17465896 -166822766 - MIR3 SINE MIR -112 96 3 462 314 34 0 chr4 17466747 17466922 -166821740 - MIR SINE MIR -14 248 68 23 33 0 0 chr4 17468340 17468370 -166820292 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 17469752 17469773 -166818889 + AT_rich Low_complexity Low_complexity 1 21 0 237 299 95 36 chr4 17469978 17470199 -166818463 - L1MC/D LINE L1 -2256 5552 5319 449 332 76 26 chr4 17470241 17470624 -166818038 - L1ME4a LINE L1 -9 6112 5711 211 373 10 47 chr4 17471090 17471283 -166817379 + L2 LINE L2 3111 3296 -17 2975 219 4 11 chr4 17471291 17472053 -166816609 - L1 LINE L1 -2444 3702 2946 5345 209 22 27 chr4 17472055 17473412 -166815250 + L1 LINE L1 3710 5059 -1087 540 78 13 0 chr4 17473419 17473496 -166815166 + L1PA16 LINE L1 6079 6156 -10 2414 126 22 0 chr4 17473687 17474043 -166814619 + THE1B LTR MaLR 1 364 0 252 247 224 0 chr4 17474862 17474947 -166813715 - MIR SINE MIR 0 262 159 380 262 31 109 chr4 17474955 17475184 -166813478 - MLT1I LTR MaLR -8 401 191 236 270 33 149 chr4 17475503 17475744 -166812918 + MIR SINE MIR 49 261 -1 1162 141 0 0 chr4 17475997 17476196 -166812466 - L1MA6 LINE L1 0 6300 6102 320 256 78 39 chr4 17476466 17476646 -166812016 + L1MC/D LINE L1 5582 5768 -2040 238 355 55 9 chr4 17476834 17476944 -166811718 + L2 LINE L2 2924 3038 -275 939 232 23 5 chr4 17476944 17477164 -166811498 + L1ME LINE L1 5508 5731 -431 851 267 157 12 chr4 17477294 17477695 -166810967 + L1MC4a LINE L1 5436 5894 -1914 526 292 62 11 chr4 17478664 17478842 -166809820 + MIR3 SINE MIR 16 202 -6 264 324 28 0 chr4 17478980 17479051 -166809611 + MIR3 SINE MIR 93 165 -43 443 221 39 0 chr4 17479146 17479250 -166809412 - Tigger5 DNA MER2_type 0 2323 2216 492 309 24 52 chr4 17479611 17479863 -166808799 - MIR SINE MIR -5 257 13 667 306 79 70 chr4 17480334 17480964 -166807698 + L2 LINE L2 1820 2455 -859 1745 160 99 0 chr4 17481038 17481351 -166807311 + MER7A DNA MER2_type 1 342 -4 289 310 79 50 chr4 17483323 17483626 -166805036 + L1MCb LINE L1 413 724 -5698 271 271 0 14 chr4 17483880 17483950 -166804712 + L1MCb LINE L1 818 886 -5537 325 128 35 58 chr4 17483983 17484069 -166804593 + L1MA4 LINE L1 6216 6299 -1 401 252 0 18 chr4 17484238 17484349 -166804313 + L1MCb LINE L1 1170 1278 -5145 1524 167 28 31 chr4 17484350 17484637 -166804025 + AluJo SINE Alu 1 286 -26 33 0 0 0 chr4 17484648 17484681 -166803981 + AT_rich Low_complexity Low_complexity 1 33 0 1715 276 58 37 chr4 17484684 17485567 -166803095 + L1MCb LINE L1 1281 2181 -4760 1261 264 53 28 chr4 17485587 17486022 -166802640 + L1MCb LINE L1 4 449 -5596 230 293 8 65 chr4 17488046 17488169 -166800493 + MIR SINE MIR 70 185 -77 276 320 7 52 chr4 17489547 17489700 -166798962 + MIR SINE MIR 35 180 -82 253 253 25 51 chr4 17490526 17490605 -166798057 + MIR SINE MIR 90 166 -96 258 284 0 0 chr4 17490658 17490732 -166797930 + (TA)n Simple_repeat Simple_repeat 2 75 0 364 238 49 98 chr4 17490777 17490920 -166797742 - MIR SINE MIR -19 243 108 680 268 39 36 chr4 17491052 17491360 -166797302 - MER74B LTR ERVL -34 588 179 200 385 0 0 chr4 17492039 17492104 -166796558 - MIR3 SINE MIR -15 193 129 195 282 146 19 chr4 17492442 17492545 -166796117 + MIR SINE MIR 137 252 -10 193 194 0 0 chr4 17493859 17493895 -166794767 - MIR SINE MIR -10 252 217 186 409 63 7 chr4 17494045 17494187 -166794475 - L2 LINE L2 -2 3311 3162 * 754 282 77 55 chr4 17494170 17494549 -166794113 - L2 LINE L2 -2 3311 2925 434 327 60 20 chr4 17495522 17495773 -166792889 - MIR SINE MIR 0 262 2 1484 204 23 29 chr4 17495940 17496283 -166792379 - MLT1A1 LTR MaLR 0 365 25 1916 120 13 43 chr4 17496656 17496957 -166791705 + AluSq SINE Alu 1 292 -21 5035 117 52 7 chr4 17497046 17497810 -166790852 + HSMAR1 DNA Mariner 1 799 -488 730 137 17 0 chr4 17497817 17497934 -166790728 + AluSp/q SINE Alu 174 292 -21 366 169 14 0 chr4 17498033 17498104 -166790558 + HSMAR1 DNA Mariner 1 72 -1215 705 167 9 0 chr4 17498109 17498223 -166790439 - HSMAR1 DNA Mariner -611 676 562 * 3568 114 6 0 chr4 17498222 17498705 -166789957 + HSMAR1 DNA Mariner 802 1287 0 564 344 118 55 chr4 17499197 17499846 -166788816 - L2 LINE L2 -430 2884 2278 2338 87 3 10 chr4 17499846 17500155 -166788507 + AluY SINE Alu 1 307 -4 564 344 118 55 chr4 17500155 17501038 -166787624 - L2 LINE L2 -1036 2278 1255 181 309 52 62 chr4 17501678 17501775 -166786887 + L3b LINE CR1 1478 1573 -10 348 270 101 46 chr4 17501863 17502019 -166786643 + MIR SINE MIR 5 173 -80 935 219 5 5 chr4 17502019 17502224 -166786438 - MER3 DNA MER1_type 0 209 5 348 270 101 46 chr4 17502224 17502245 -166786417 + MIR SINE MIR 173 191 -62 21 0 0 0 chr4 17502252 17502273 -166786389 + AT_rich Low_complexity Low_complexity 1 21 0 306 343 55 0 chr4 17502338 17502484 -166786178 - MIR SINE MIR -28 234 81 201 151 19 38 chr4 17503136 17503189 -166785473 + A-rich Low_complexity Low_complexity 1 52 0 281 229 11 126 chr4 17503234 17503409 -166785253 - MLT1J2 LTR MaLR 0 450 296 453 274 109 23 chr4 17503437 17503612 -166785050 - MLT1J2 LTR MaLR -255 195 6 293 121 0 106 chr4 17504564 17504630 -166784032 + MLT1K LTR MaLR 530 588 0 266 344 123 22 chr4 17504874 17505191 -166783471 - L2 LINE L2 -416 2898 2550 1141 233 31 97 chr4 17506208 17506763 -166781899 - L1ME2 LINE L1 0 6164 5656 1982 98 0 24 chr4 17507167 17507496 -166781166 + AluSq SINE Alu 33 354 0 1072 233 42 10 chr4 17508619 17508932 -166779730 - MER33 DNA MER1_type -1 323 1 233 250 62 12 chr4 17509466 17509546 -166779116 + L2 LINE L2 3187 3270 -2 182 384 141 0 chr4 17509765 17509864 -166778798 - MIR SINE MIR -114 148 36 330 293 17 35 chr4 17510789 17510905 -166777757 + L2 LINE L2 3200 3313 0 726 319 85 50 chr4 17510930 17511857 -166776805 + L2 LINE L2 1890 2849 -465 294 294 28 46 chr4 17511937 17512046 -166776616 + L2 LINE L2 2983 3089 -183 356 252 16 31 chr4 17512083 17512210 -166776452 + MLT1I LTR MaLR 277 401 -8 573 288 64 69 chr4 17513102 17513568 -166775094 + LTR67 LTR ERVL 92 555 -2 21 0 0 0 chr4 17513604 17513625 -166775037 + AT_rich Low_complexity Low_complexity 1 21 0 1177 194 14 0 chr4 17513746 17513962 -166774700 + MER20 DNA MER1_type 1 219 0 276 351 42 54 chr4 17514097 17514410 -166774252 - L2 LINE L2 -1 3312 3004 2412 152 31 31 chr4 17514635 17515056 -166773606 - MSTB LTR MaLR -5 421 1 212 315 9 56 chr4 17515234 17515438 -166773224 - MIR3 SINE MIR -6 202 8 247 323 77 23 chr4 17516023 17516153 -166772509 + MIR SINE MIR 18 154 -108 307 287 189 37 chr4 17516165 17516329 -166772333 - MIR SINE MIR -8 254 66 319 274 17 34 chr4 17516892 17517009 -166771653 + GA-rich Low_complexity Low_complexity 2 116 0 267 253 13 13 chr4 17517191 17517270 -166771392 + (TA)n Simple_repeat Simple_repeat 2 80 0 309 287 43 9 chr4 17517281 17517396 -166771266 - MIR SINE MIR -73 189 71 200 200 0 0 chr4 17517450 17517490 -166771172 + (TTCA)n Simple_repeat Simple_repeat 4 43 0 1676 237 99 13 chr4 17517572 17518048 -166770614 + LTR40a LTR ERVL 3 519 0 462 345 103 5 chr4 17518366 17518589 -166770073 + MIR SINE MIR 16 260 -2 623 308 49 0 chr4 17519611 17519858 -166768804 + MIR SINE MIR 2 260 -2 21 0 0 0 chr4 17520955 17520976 -166767686 + AT_rich Low_complexity Low_complexity 1 21 0 1741 246 71 70 chr4 17521176 17521794 -166766868 - MLT1E2 LTR MaLR 0 626 6 282 246 172 8 chr4 17521958 17521974 -166766688 + L1ME2 LINE L1 5998 6010 -154 336 24 0 0 chr4 17521974 17522015 -166766647 + (CA)n Simple_repeat Simple_repeat 1 41 0 282 246 172 8 chr4 17522015 17522132 -166766530 + L1ME2 LINE L1 6010 6153 -11 2318 103 17 28 chr4 17522615 17522973 -166765689 - THE1A LTR MaLR 0 355 2 25 51 0 0 chr4 17523707 17523746 -166764916 + AT_rich Low_complexity Low_complexity 1 39 0 321 303 74 25 chr4 17524816 17524938 -166763724 + MIR SINE MIR 92 219 -43 341 345 21 14 chr4 17525030 17525175 -166763487 - LTR16C LTR ERVL -165 326 181 468 311 0 0 chr4 17525441 17525560 -166763102 - L2 LINE L2 -2 3311 3193 1877 225 86 90 chr4 17525716 17525785 -166762877 - L1MC5 LINE L1 -370 7591 7523 795 107 0 0 chr4 17525785 17525897 -166762765 - L1PA10 LINE L1 -11 6157 6046 1877 225 86 90 chr4 17525897 17526919 -166761743 - L1MC5 LINE L1 -438 7523 6503 32 91 0 0 chr4 17527140 17527228 -166761434 + AT_rich Low_complexity Low_complexity 1 88 0 708 242 77 0 chr4 17527401 17527595 -166761067 - L1MC5 LINE L1 -1877 5931 5723 362 285 106 34 chr4 17528305 17528691 -166759971 - L1MC5 LINE L1 -1712 4434 4021 3780 188 20 22 chr4 17529173 17529907 -166758755 + MER44D DNA MER2_type 1 605 0 183 129 0 0 chr4 17529917 17529948 -166758714 + (TG)n Simple_repeat Simple_repeat 2 32 0 21 36 0 0 chr4 17530335 17530363 -166758299 + AT_rich Low_complexity Low_complexity 1 28 0 418 357 29 25 chr4 17530835 17531115 -166757547 - L1ME4a LINE L1 -218 5903 5623 40 37 0 0 chr4 17532220 17532274 -166756388 + AT_rich Low_complexity Low_complexity 1 54 0 2457 123 17 6 chr4 17532876 17533234 -166755428 - THE1B LTR MaLR -2 362 1 317 317 99 6 chr4 17533391 17533552 -166755110 - MIR SINE MIR -51 211 36 242 329 122 18 chr4 17533699 17533863 -166754799 + MIR SINE MIR 66 246 -16 499 314 37 21 chr4 17534256 17534444 -166754218 - MIR SINE MIR -8 254 64 1664 169 71 23 chr4 17534830 17535184 -166753478 + THE1C LTR MaLR 5 375 0 1356 107 53 31 chr4 17535217 17535315 -166753347 - MER30 DNA MER1_type 0 230 136 2346 110 0 0 chr4 17535315 17535624 -166753038 + AluSx SINE Alu 1 309 -3 1356 107 53 31 chr4 17535624 17535750 -166752912 - MER30 DNA MER1_type -94 136 1 237 273 0 18 chr4 17535751 17535806 -166752856 - MLT1J1 LTR MaLR -110 336 283 1882 187 47 6 chr4 17536071 17536430 -166752232 - MLT1B LTR MaLR 0 390 17 822 210 17 23 chr4 17536445 17536621 -166752041 - MLT1J2 LTR MaLR -194 256 82 1565 202 34 36 chr4 17536982 17537369 -166751293 + MLT1B LTR MaLR 1 386 -4 1714 206 82 5 chr4 17537625 17537993 -166750669 + MSTD LTR MaLR 1 396 0 851 175 0 0 chr4 17538613 17538756 -166749906 - MLT1C LTR MaLR 0 467 325 229 169 42 56 chr4 17539668 17539739 -166748923 - MER74A LTR ERVL 0 558 489 2308 80 0 7 chr4 17539761 17540060 -166748602 - AluSp SINE Alu -16 297 1 2234 185 30 38 chr4 17540060 17540567 -166748095 - MER74A LTR ERVL -55 503 1 324 336 25 0 chr4 17540630 17540752 -166747910 - MIR SINE MIR -57 205 81 207 0 0 0 chr4 17541026 17541049 -166747613 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2057 89 49 26 chr4 17541627 17541931 -166746731 - AluY SINE Alu 0 311 1 421 337 61 41 chr4 17542045 17542291 -166746371 + MIR SINE MIR 11 261 -1 265 188 24 0 chr4 17542298 17542383 -166746279 + (TA)n Simple_repeat Simple_repeat 1 87 0 213 300 43 0 chr4 17542535 17542605 -166746057 - MIR3 SINE MIR -16 192 120 219 69 0 0 chr4 17543443 17543472 -166745190 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 290 340 0 21 chr4 17544053 17544147 -166744515 + MIR SINE MIR 21 112 -150 363 229 50 64 chr4 17544516 17544656 -166744006 + MIR SINE MIR 124 261 -1 616 329 18 22 chr4 17544694 17544916 -166743746 + LTR16A LTR ERVL 86 306 -144 1814 170 3 0 chr4 17546354 17546648 -166742014 + AluJb SINE Alu 1 295 -17 301 238 0 0 chr4 17546683 17546746 -166741916 + L1MC4 LINE L1 6641 6703 -1339 246 261 0 43 chr4 17547291 17547360 -166741302 + GA-rich Low_complexity Low_complexity 2 67 0 267 294 261 6 chr4 17547745 17547925 -166740737 + MIR SINE MIR 21 246 -16 1147 257 86 72 chr4 17548198 17548238 -166740424 - MLT2B1 LTR ERVL 0 520 482 411 38 0 0 chr4 17548238 17548291 -166740371 + (TG)n Simple_repeat Simple_repeat 2 54 0 1147 257 86 72 chr4 17548291 17548763 -166739899 - MLT2B1 LTR ERVL -38 482 1 346 290 154 6 chr4 17549011 17549180 -166739482 - MIR SINE MIR -14 248 55 277 262 0 95 chr4 17549220 17549304 -166739358 + L2 LINE L2 3233 3308 -5 291 316 59 64 chr4 17549691 17549818 -166738844 + MIR SINE MIR 46 173 -89 2256 96 3 17 chr4 17549818 17550119 -166738543 - AluSc SINE Alu -12 297 1 291 316 59 64 chr4 17550119 17550178 -166738484 + MIR SINE MIR 173 231 -31 214 356 115 0 chr4 17551023 17551110 -166737552 + MIR SINE MIR 30 126 -82 849 222 9 47 chr4 17553821 17554033 -166734629 - MER63A DNA MER1_type 0 210 7 804 217 37 28 chr4 17554910 17555127 -166733535 + MER20 DNA MER1_type 1 219 0 493 335 57 10 chr4 17555589 17555798 -166732864 + MIR SINE MIR 33 251 -11 3439 67 0 7 chr4 17555981 17556432 -166732230 + LTR7 LTR ERV1 1 448 -2 1053 117 0 0 chr4 17556434 17556588 -166732074 + HERVH LTR ERV1 1 154 -7559 * 15802 105 69 11 chr4 17556586 17559244 -166729418 + HERVH LTR ERV1 477 3290 -4423 8279 95 2 3 chr4 17559234 17560959 -166727703 + HERVH LTR ERV1 3492 5149 -2564 * 1303 108 38 0 chr4 17560960 17561172 -166727490 + HERVH LTR ERV1 5600 5819 -1894 2262 94 34 16 chr4 17561172 17561555 -166727107 + HERVH LTR ERV1 7324 7713 0 3377 67 2 9 chr4 17561555 17562006 -166726656 + LTR7 LTR ERV1 1 448 -2 258 259 168 30 chr4 17562224 17562355 -166726307 - MIR SINE MIR -79 183 35 262 315 9 28 chr4 17564694 17564802 -166723860 + (TATATG)n Simple_repeat Simple_repeat 4 109 0 239 184 20 0 chr4 17564802 17564851 -166723811 - MLT2F LTR ERVL -57 606 557 355 270 76 49 chr4 17564921 17565106 -166723556 - MLT1E3 LTR MaLR -383 241 52 230 219 44 131 chr4 17565110 17565270 -166723392 - MLT2F LTR ERVL -517 146 1 364 344 23 0 chr4 17565333 17565464 -166723198 + L2 LINE L2 3134 3267 -5 310 336 46 0 chr4 17565717 17565848 -166722814 - L2 LINE L2 -4 3268 3132 2316 121 49 0 chr4 17565901 17566248 -166722414 + THE1B LTR MaLR 1 364 0 928 185 0 0 chr4 17566923 17567094 -166721568 - AluSg/x SINE Alu 0 300 130 687 292 5 10 chr4 17567094 17567303 -166721359 - MER20 DNA MER1_type -11 208 1 376 343 39 6 chr4 17567426 17567604 -166721058 - MIR SINE MIR -78 184 1 186 103 0 0 chr4 17567953 17567982 -166720680 + (T)n Simple_repeat Simple_repeat 1 29 0 1597 159 69 45 chr4 17568009 17568343 -166720319 - MER61A LTR ERV1 0 343 2 529 138 28 110 chr4 17568345 17568490 -166720172 - MLT1A2 LTR MaLR -241 133 1 209 375 0 0 chr4 17568751 17568815 -166719847 + MIR SINE MIR 85 148 -60 1980 130 58 3 chr4 17568886 17569179 -166719483 + AluSx SINE Alu 1 309 -3 343 215 93 37 chr4 17569257 17569364 -166719298 + L2 LINE L2 2501 2613 -701 * 680 285 8 51 chr4 17569300 17569535 -166719127 + MIR SINE MIR 38 262 0 * 985 259 119 23 chr4 17569532 17570189 -166718473 + L2 LINE L2 2592 3313 0 321 140 0 0 chr4 17570647 17570704 -166717958 + (TG)n Simple_repeat Simple_repeat 2 58 0 2092 285 60 11 chr4 17570920 17571671 -166716991 + Zaphod DNA AcHobo 6 793 -3238 1911 167 28 0 chr4 17571709 17572069 -166716593 + L1PA16 LINE L1 5577 5946 -220 41427 45 2 1 chr4 17572640 17578785 -166709877 + L1PA3 LINE L1 4 6152 -3 225 252 29 68 chr4 17578959 17579062 -166709600 - MLT1J2 LTR MaLR -310 140 42 255 274 113 32 chr4 17579108 17579232 -166709430 - L2 LINE L2 -1183 2131 1998 314 306 108 69 chr4 17580344 17580576 -166708086 - L2 LINE L2 -5 3267 3027 2206 129 6 0 chr4 17580785 17581096 -166707566 + AluSp SINE Alu 1 313 0 208 336 174 20 chr4 17581405 17581554 -166707108 + MIR3 SINE MIR 10 181 -27 389 291 61 80 chr4 17582763 17582976 -166705686 - MIR SINE MIR -48 214 6 21 0 0 0 chr4 17583111 17583132 -166705530 + AT_rich Low_complexity Low_complexity 1 21 0 1608 182 7 20 chr4 17583372 17583668 -166704994 - AluJb SINE Alu -20 292 1 551 269 51 87 chr4 17583741 17584292 -166704370 - L1ME LINE L1 -345 5817 5291 312 293 57 53 chr4 17584589 17584872 -166703790 + L1M4 LINE L1 4733 5016 -1130 265 342 19 13 chr4 17585617 17585772 -166702890 - ERVL LTR ERVL -3881 1883 1728 623 329 28 12 chr4 17586311 17586566 -166702096 + ERVL LTR ERVL 4224 4482 -1282 1002 243 60 76 chr4 17586578 17586702 -166701960 - MLT1A2 LTR MaLR -13 361 236 2060 112 4 0 chr4 17586702 17587005 -166701657 - AluSc SINE Alu 0 309 6 1002 243 60 76 chr4 17587005 17587247 -166701415 - MLT1A2 LTR MaLR -138 236 1 355 335 72 19 chr4 17587649 17587858 -166700804 + ERVL LTR ERVL 4903 5122 -642 351 286 11 0 chr4 17588203 17588294 -166700368 + MER96 DNA MER1_type? 11 102 -73 326 336 39 0 chr4 17588389 17588493 -166700169 + L2 LINE L2 3158 3265 -7 345 264 21 62 chr4 17588756 17588900 -166699762 + MIR SINE MIR 66 203 -59 26 50 0 0 chr4 17588914 17588954 -166699708 + AT_rich Low_complexity Low_complexity 1 40 0 233 98 24 0 chr4 17589064 17589105 -166699557 + (TC)n Simple_repeat Simple_repeat 1 42 0 26 0 0 0 chr4 17589247 17589273 -166699389 + AT_rich Low_complexity Low_complexity 1 26 0 252 347 8 50 chr4 17590304 17590425 -166698237 + L2 LINE L2 2852 2967 -305 184 30 61 0 chr4 17590427 17590460 -166698202 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 333 282 61 70 chr4 17590663 17590876 -166697786 - L2 LINE L2 -10 3303 3093 225 139 0 0 chr4 17590951 17590994 -166697668 + (TG)n Simple_repeat Simple_repeat 2 44 0 35 0 0 0 chr4 17591638 17591673 -166696989 + AT_rich Low_complexity Low_complexity 1 35 0 365 0 22 0 chr4 17591708 17591753 -166696909 + (TG)n Simple_repeat Simple_repeat 1 46 0 189 0 0 0 chr4 17591893 17591914 -166696748 + (T)n Simple_repeat Simple_repeat 1 21 0 1676 184 0 27 chr4 17593286 17593416 -166695246 + AluJb SINE Alu 1 133 -179 369 0 0 0 chr4 17593416 17593457 -166695205 + (TA)n Simple_repeat Simple_repeat 1 41 0 1676 184 0 27 chr4 17593457 17593647 -166695015 + AluJb SINE Alu 133 312 0 5175 60 8 0 chr4 17594125 17594773 -166693889 + L1PA7 LINE L1 5502 6154 0 335 323 56 87 chr4 17594865 17595243 -166693419 - MLT1I LTR MaLR -15 394 29 199 43 22 87 chr4 17595464 17595510 -166693152 + (CTATT)n Simple_repeat Simple_repeat 2 44 0 396 317 24 16 chr4 17595753 17595876 -166692786 + MIR SINE MIR 17 140 -68 35 0 0 0 chr4 17597233 17597268 -166691394 + AT_rich Low_complexity Low_complexity 1 35 0 360 283 122 40 chr4 17597834 17598081 -166690581 - L1 LINE L1 -2681 3465 3199 26 64 0 0 chr4 17598404 17598451 -166690211 + AT_rich Low_complexity Low_complexity 1 47 0 238 299 204 6 chr4 17600051 17600208 -166688454 + MIR SINE MIR 65 252 -10 219 356 23 11 chr4 17600778 17600865 -166687797 - L2 LINE L2 -44 3269 3182 1335 231 50 76 chr4 17601688 17602186 -166686476 - MLT1D LTR MaLR 0 505 21 3650 189 12 31 chr4 17602300 17603117 -166685545 - L1PA15-16 LINE L1 -4188 2661 1860 282 256 35 0 chr4 17604287 17604373 -166684289 + (CATATA)n Simple_repeat Simple_repeat 6 94 0 306 67 0 0 chr4 17605635 17605680 -166682982 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 307 242 84 4 chr4 17606869 17606986 -166681676 - MIR SINE MIR -55 153 19 191 328 16 16 chr4 17606992 17607053 -166681609 + L3 LINE CR1 1509 1569 -8 405 0 0 0 chr4 17607211 17607256 -166681406 + (TG)n Simple_repeat Simple_repeat 2 46 0 241 223 132 32 chr4 17607426 17607569 -166681093 + MIR3 SINE MIR 11 165 -71 21 57 0 0 chr4 17608557 17608592 -166680070 + AT_rich Low_complexity Low_complexity 1 35 0 708 119 18 0 chr4 17610151 17610260 -166678402 - AluSp SINE Alu -202 111 1 272 390 19 0 chr4 17611453 17611612 -166677050 + MER20B DNA MER1_type 17 178 -605 3205 198 28 67 chr4 17612030 17612983 -166675679 + LTR5 LTR ERVK 54 969 0 1287 195 6 58 chr4 17613271 17613584 -166675078 - AluJb SINE Alu -15 297 1 477 163 12 0 chr4 17613615 17613701 -166674961 + AluS SINE Alu 1 87 -226 257 103 0 162 chr4 17613806 17613874 -166674788 + MADE1 DNA Mariner 24 80 0 647 284 5 56 chr4 17613905 17614120 -166674542 + MER82 DNA MER2_type 444 647 -6 285 182 0 0 chr4 17614133 17614188 -166674474 - L1MC4 LINE L1 -1339 6703 6649 234 0 0 0 chr4 17614188 17614214 -166674448 + (CA)n Simple_repeat Simple_repeat 1 26 0 1679 120 15 8 chr4 17614243 17614502 -166674160 - AluSx SINE Alu -14 298 38 1615 187 28 3 chr4 17615703 17615992 -166672670 - AluJb SINE Alu -16 296 1 2006 294 68 61 chr4 17615992 17617460 -166671202 - L1M1 LINE L1 -5359 2206 16 186 43 0 0 chr4 17617475 17617498 -166671164 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 358 322 180 30 chr4 17617613 17617908 -166670754 - L2 LINE L2 -2954 360 22 443 281 39 46 chr4 17619207 17619360 -166669302 - MIR SINE MIR -71 191 40 469 367 53 13 chr4 17619589 17619889 -166668773 - L2 LINE L2 -907 2407 2096 220 391 55 0 chr4 17620029 17620139 -166668523 - MIR SINE MIR -101 161 46 190 344 53 17 chr4 17620189 17620333 -166668329 - MIR SINE MIR -67 141 47 294 29 0 0 chr4 17620529 17620564 -166668098 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 2450 131 3 21 chr4 17621484 17621560 -166667102 + THE1C LTR MaLR 1 77 -298 4714 93 14 5 chr4 17621560 17622214 -166666448 - PABL_A LTR ERV1 0 660 1 2450 131 3 21 chr4 17622214 17622519 -166666143 + THE1C LTR MaLR 77 375 0 1848 150 100 9 chr4 17622523 17622991 -166665671 + THE1-int LTR MaLR 4 469 -1111 526 292 96 12 chr4 17623185 17623425 -166665237 - MIR SINE MIR -1 261 2 23 0 0 0 chr4 17624298 17624321 -166664341 + AT_rich Low_complexity Low_complexity 1 23 0 26 64 0 0 chr4 17624930 17624977 -166663685 + AT_rich Low_complexity Low_complexity 1 47 0 255 256 11 11 chr4 17625761 17625851 -166662811 + (TA)n Simple_repeat Simple_repeat 2 91 0 25 31 0 0 chr4 17626514 17626546 -166662116 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr4 17627014 17627037 -166661625 + AT_rich Low_complexity Low_complexity 1 23 0 1434 131 50 7 chr4 17629047 17629232 -166659430 - AluY SINE Alu 0 311 113 207 0 0 0 chr4 17629232 17629255 -166659407 + (TA)n Simple_repeat Simple_repeat 1 23 0 1434 131 50 7 chr4 17629255 17629373 -166659289 - AluY SINE Alu -198 113 1 339 353 86 63 chr4 17629738 17630120 -166658542 + L2 LINE L2 2216 2606 -708 211 236 11 11 chr4 17630185 17630274 -166658388 + GA-rich Low_complexity Low_complexity 2 90 0 242 210 0 0 chr4 17631124 17631186 -166657476 + A-rich Low_complexity Low_complexity 1 62 0 40 87 0 0 chr4 17631309 17631412 -166657250 + AT_rich Low_complexity Low_complexity 1 103 0 422 326 47 42 chr4 17631500 17631715 -166656947 + MIR SINE MIR 2 217 -45 1294 311 65 16 chr4 17631930 17632500 -166656162 + L3 LINE CR1 613 1210 -367 1031 314 39 3 chr4 17632507 17632844 -166655818 + L2 LINE L2 2015 2363 -951 24 0 0 0 chr4 17632914 17632938 -166655724 + AT_rich Low_complexity Low_complexity 1 24 0 189 371 34 34 chr4 17632969 17633058 -166655604 + L3 LINE CR1 1431 1519 -58 215 240 60 0 chr4 17633183 17633233 -166655429 - L2 LINE L2 -16 3297 3245 3783 240 26 18 chr4 17633481 17634643 -166654019 + L1PA16 LINE L1 3436 4614 -2951 513 256 22 0 chr4 17634829 17634966 -166653696 - MLT1D LTR MaLR -352 153 14 291 214 0 0 chr4 17635089 17635159 -166653503 + (CA)n Simple_repeat Simple_repeat 2 71 0 21 0 0 0 chr4 17635295 17635316 -166653346 + AT_rich Low_complexity Low_complexity 1 21 0 217 224 0 20 chr4 17635370 17635419 -166653243 + CT-rich Low_complexity Low_complexity 3 50 0 2249 30 4 4 chr4 17635569 17635835 -166652827 + AluYa5 SINE Alu 16 281 -30 248 0 31 0 chr4 17635900 17635932 -166652730 + (TA)n Simple_repeat Simple_repeat 2 34 0 250 297 34 80 chr4 17638079 17638254 -166650408 + MLT1L LTR MaLR 34 200 -415 1772 120 7 49 chr4 17638503 17638811 -166649851 + AluSq SINE Alu 12 306 -7 1743 277 60 34 chr4 17639081 17640098 -166648564 - L1M4 LINE L1 -3087 3059 2011 1934 41 8 0 chr4 17640098 17640343 -166648319 - L1PA3 LINE L1 0 6155 5909 1743 277 60 34 chr4 17640343 17640533 -166648129 - L1M4 LINE L1 -4135 2011 1828 3459 166 23 1 chr4 17640642 17641415 -166647247 - L1M1 LINE L1 -743 5403 4716 236 351 21 21 chr4 17641596 17641690 -166646972 - MIR3 SINE MIR -52 156 63 24 32 0 0 chr4 17641725 17641756 -166646906 + AT_rich Low_complexity Low_complexity 1 31 0 23 78 0 0 chr4 17641828 17641879 -166646783 + AT_rich Low_complexity Low_complexity 1 51 0 187 292 80 35 chr4 17642952 17643065 -166645597 - L3 LINE CR1 -164 1413 1296 28 71 0 0 chr4 17643307 17643363 -166645299 + AT_rich Low_complexity Low_complexity 1 56 0 4579 205 39 10 chr4 17643582 17645491 -166643171 + L1PA16 LINE L1 5590 7582 -3 25 0 0 0 chr4 17645591 17645616 -166643046 + AT_rich Low_complexity Low_complexity 1 25 0 345 243 43 3 chr4 17645923 17646032 -166642630 + MLT1J1 LTR MaLR 85 196 -254 2016 178 51 28 chr4 17646502 17647015 -166641647 - MLT2A2 LTR ERVL -14 540 1 776 107 0 8 chr4 17647410 17647532 -166641130 + (GGAA)n Simple_repeat Simple_repeat 2 122 0 7053 51 0 18 chr4 17649134 17650486 -166638176 - L1PA4 LINE L1 -1 6154 4815 249 384 45 11 chr4 17650634 17650811 -166637851 + MIR SINE MIR 79 261 -1 21 57 0 0 chr4 17651255 17651290 -166637372 + AT_rich Low_complexity Low_complexity 1 35 0 775 261 37 18 chr4 17651311 17651529 -166637133 + MIR SINE MIR 41 262 0 1251 237 31 20 chr4 17651813 17652180 -166636482 + MLT1D LTR MaLR 127 370 -4 395 302 108 55 chr4 17653255 17653652 -166635010 + MLT1J2 LTR MaLR 33 450 0 701 262 6 6 chr4 17653657 17653825 -166634837 - MIR SINE MIR -87 175 8 2037 139 7 0 chr4 17654287 17654588 -166634074 + AluSx SINE Alu 1 303 -9 187 274 210 40 chr4 17656521 17656645 -166632017 - MIR SINE MIR -13 249 105 24 32 0 0 chr4 17656891 17656922 -166631740 + AT_rich Low_complexity Low_complexity 1 31 0 379 227 29 87 chr4 17657150 17657322 -166631340 - MIR SINE MIR -25 237 76 2531 53 0 0 chr4 17657723 17658024 -166630638 + AluY SINE Alu 1 301 -10 194 170 0 21 chr4 17658029 17658076 -166630586 + GA-rich Low_complexity Low_complexity 1 46 0 180 111 0 0 chr4 17658413 17658440 -166630222 + (AGGGGG)n Simple_repeat Simple_repeat 5 31 0 423 0 0 0 chr4 17658656 17658703 -166629959 + (TG)n Simple_repeat Simple_repeat 2 48 0 335 295 192 13 chr4 17658918 17659074 -166629588 + MIR SINE MIR 60 243 -19 349 315 16 24 chr4 17659231 17659358 -166629304 - L2 LINE L2 -1 3271 3146 448 284 50 24 chr4 17659773 17660111 -166628551 + L1MC4a LINE L1 4887 5233 -913 413 245 21 0 chr4 17660186 17660329 -166628333 + L1MC4a LINE L1 5343 5488 -2320 * 3200 190 8 37 chr4 17660324 17661301 -166627361 + L1MC1 LINE L1 4905 5865 -468 183 275 92 92 chr4 17661336 17661445 -166627217 + MIR SINE MIR 31 139 -69 2444 161 41 2 chr4 17661451 17661918 -166626744 + L1MC1 LINE L1 5842 6326 -7 1929 262 73 33 chr4 17661936 17662918 -166625744 + L1MC4a LINE L1 5482 6503 -1305 284 188 25 12 chr4 17662917 17662997 -166625665 + L1MD3 LINE L1 7902 7982 -13 * 2364 60 0 0 chr4 17663179 17663500 -166625162 + AluY SINE Alu 2 322 0 325 374 24 0 chr4 17663613 17663736 -166624926 - MIR3 SINE MIR -26 182 57 337 325 69 15 chr4 17664696 17664899 -166623763 - MIR SINE MIR -16 246 33 213 175 0 0 chr4 17664950 17664990 -166623672 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 345 297 41 21 chr4 17665170 17665315 -166623347 + MIR SINE MIR 35 182 -80 467 270 143 25 chr4 17666405 17666601 -166622061 - MIR SINE MIR -13 249 31 219 36 0 0 chr4 17666738 17666766 -166621896 + (TCTCTG)n Simple_repeat Simple_repeat 1 28 0 308 322 80 62 chr4 17666892 17667129 -166621533 - L2 LINE L2 -123 3149 2918 2078 137 0 16 chr4 17667129 17667444 -166621218 - AluSq SINE Alu -3 310 1 308 322 80 62 chr4 17667444 17667816 -166620846 - L2 LINE L2 -354 2918 2508 287 299 10 41 chr4 17667879 17667976 -166620686 - MER91A DNA MER1_type 0 196 103 428 333 142 6 chr4 17668276 17668438 -166620224 + MER5A DNA MER1_type 4 187 -2 189 0 0 0 chr4 17669658 17669679 -166618983 + (CA)n Simple_repeat Simple_repeat 2 22 0 218 320 39 0 chr4 17669769 17669847 -166618815 + MIR SINE MIR 119 199 -63 517 267 70 113 chr4 17669878 17670275 -166618387 + L2 LINE L2 2934 3313 0 184 358 84 11 chr4 17670326 17670421 -166618241 - MER5B DNA MER1_type -27 151 50 236 291 51 63 chr4 17671096 17671254 -166617408 - MER5A DNA MER1_type -1 188 33 405 380 98 17 chr4 17672120 17672467 -166616195 - L2 LINE L2 -38 3234 2860 430 208 50 10 chr4 17672854 17672955 -166615707 - MER45 DNA AcHobo -61 117 13 830 260 28 28 chr4 17674093 17674343 -166614319 - MIR SINE MIR 0 262 13 21 57 0 0 chr4 17674421 17674456 -166614206 + AT_rich Low_complexity Low_complexity 1 35 0 247 196 0 22 chr4 17674744 17674790 -166613872 - L2 LINE L2 -4 3268 3224 303 287 167 0 chr4 17675371 17675479 -166613183 + L2 LINE L2 3188 3313 0 400 305 100 25 chr4 17675728 17675928 -166612734 - MIR SINE MIR -42 220 6 1025 211 86 27 chr4 17676080 17676482 -166612180 + MLT2B1 LTR ERVL 1 401 -13 2156 126 24 78 chr4 17679280 17679401 -166609261 - MER83 LTR ERV1 -12 436 310 1801 147 0 72 chr4 17679401 17679735 -166608927 + AluSx SINE Alu 1 310 -2 2156 126 24 78 chr4 17679735 17680074 -166608588 - MER83 LTR ERV1 -138 310 1 1658 180 64 0 chr4 17680110 17680500 -166608162 - MLT2B1 LTR ERVL -55 460 1 4948 31 2 3 chr4 17680936 17681523 -166607139 - L1PA5 LINE L1 -7 6147 5562 262 296 93 9 chr4 17681538 17681646 -166607016 - L2 LINE L2 0 3313 3197 1113 199 102 89 chr4 17684307 17684698 -166603964 - MSTD LTR MaLR 0 396 1 203 156 0 0 chr4 17685244 17685276 -166603386 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 427 241 32 97 chr4 17685401 17685617 -166603045 + MIR SINE MIR 7 208 -54 511 311 93 11 chr4 17685676 17685859 -166602803 - MIR SINE MIR -47 215 18 820 191 51 33 chr4 17686420 17686635 -166602027 + MLT1C LTR MaLR 7 225 -242 1227 216 0 24 chr4 17686635 17686922 -166601740 + MLT1C LTR MaLR 188 467 0 400 290 67 55 chr4 17687607 17687764 -166600898 + MIR SINE MIR 19 181 -81 1952 150 23 0 chr4 17687764 17688064 -166600598 + AluSq SINE Alu 1 307 -6 400 290 67 55 chr4 17688064 17688144 -166600518 + MIR SINE MIR 181 259 -3 180 220 40 40 chr4 17689032 17689082 -166599580 + L2 LINE L2 3262 3311 -2 362 251 65 47 chr4 17689343 17689506 -166599156 + MIR SINE MIR 25 189 -60 33 0 0 0 chr4 17690116 17690149 -166598513 + AT_rich Low_complexity Low_complexity 1 33 0 384 239 60 84 chr4 17691343 17691510 -166597152 + MIR SINE MIR 79 241 -21 262 274 283 0 chr4 17692186 17692412 -166596250 + L2 LINE L2 2442 2731 -583 241 234 16 0 chr4 17692436 17692500 -166596162 - MIR SINE MIR -141 121 57 180 229 181 24 chr4 17693978 17694061 -166594601 + MIR SINE MIR 21 116 -146 227 315 171 0 chr4 17694819 17694930 -166593732 - MIR SINE MIR -108 154 25 981 254 24 45 chr4 17695694 17696072 -166592590 - MER20B DNA MER1_type -397 386 17 229 280 32 0 chr4 17697377 17697470 -166591192 - MLT1L LTR MaLR -2 613 518 804 205 68 0 chr4 17697719 17697880 -166590782 + MER5A DNA MER1_type 18 189 0 284 347 77 39 chr4 17698561 17699006 -166589656 - L2 LINE L2 -220 3052 2585 2927 195 45 6 chr4 17699037 17699683 -166588979 + L1PB4 LINE L1 5486 6156 0 670 269 124 29 chr4 17699790 17700096 -166588566 + MLT1E LTR MaLR 217 584 -9 897 253 136 82 chr4 17700663 17701184 -166587478 - MLT1H LTR MaLR 0 549 1 490 316 78 42 chr4 17701247 17701440 -166587222 - MIR3 SINE MIR -4 204 5 25 31 0 0 chr4 17701481 17701513 -166587149 + AT_rich Low_complexity Low_complexity 1 32 0 229 170 19 19 chr4 17702027 17702080 -166586582 + (TTG)n Simple_repeat Simple_repeat 2 54 0 721 304 104 29 chr4 17702176 17702521 -166586141 - MLT1I LTR MaLR -7 402 32 326 258 151 0 chr4 17702968 17703061 -166585601 - MLT1E1 LTR MaLR -547 107 1 350 320 89 36 chr4 17703377 17703624 -166585038 + MIR SINE MIR 3 262 0 310 279 66 22 chr4 17704006 17704142 -166584520 + MIR3 SINE MIR 65 206 -2 233 298 32 65 chr4 17704606 17704730 -166583932 + MIR SINE MIR 86 205 -57 1779 113 22 64 chr4 17705187 17705498 -166583164 + LTR24C LTR ERV1 2 299 -336 1495 168 168 14 chr4 17705509 17705795 -166582867 - MER1B DNA MER1_type -8 331 2 1503 115 68 12 chr4 17705802 17706091 -166582571 + LTR24C LTR ERV1 305 626 -9 293 258 45 0 chr4 17706093 17706182 -166582480 + MIR SINE MIR 59 151 -111 210 291 29 48 chr4 17706426 17706529 -166582133 - MIR SINE MIR -21 241 141 3393 183 8 23 chr4 17706915 17707528 -166581134 - MER6A DNA MER2_type -1 604 1 282 306 66 16 chr4 17707905 17708026 -166580636 + L3 LINE CR1 1031 1157 -420 378 199 51 45 chr4 17708049 17708225 -166580437 + (CATA)n Simple_repeat Simple_repeat 4 180 0 267 54 0 0 chr4 17708353 17708390 -166580272 + (CA)n Simple_repeat Simple_repeat 2 38 0 207 0 0 0 chr4 17708718 17708741 -166579921 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3606 87 15 4 chr4 17708807 17709278 -166579384 + L1PA8A LINE L1 5656 6131 0 204 179 0 0 chr4 17709926 17709965 -166578697 + T-rich Low_complexity Low_complexity 1 39 0 515 224 9 0 chr4 17710331 17710438 -166578224 - MER94 DNA DNA -21 113 6 185 359 109 0 chr4 17710450 17710542 -166578120 - L2 LINE L2 -55 3217 3116 183 306 16 16 chr4 17710597 17710659 -166578003 + L2 LINE L2 3200 3261 -11 390 282 107 0 chr4 17712056 17712187 -166576475 + MIR3 SINE MIR 63 207 -1 240 389 60 28 chr4 17713055 17713271 -166575391 - MIR SINE MIR -38 224 2 266 322 52 0 chr4 17713697 17713812 -166574850 - L3 LINE CR1 -166 1411 1291 202 267 47 58 chr4 17713985 17714071 -166574591 + MIR3 SINE MIR 117 201 -7 2795 191 15 15 chr4 17714435 17715036 -166573626 + L1 LINE L1 4006 4606 -1540 2997 195 31 9 chr4 17716786 17717330 -166571332 + MER74A LTR ERVL 1 556 -2 1217 129 0 62 chr4 17718051 17718279 -166570383 - AluSg/x SINE Alu 0 318 103 872 234 18 60 chr4 17719885 17720103 -166568559 + MIR SINE MIR 29 237 -25 627 229 8 0 chr4 17720339 17720461 -166568201 - MER58B DNA MER1_type -1 340 218 200 307 160 0 chr4 17720507 17720582 -166568080 + L2 LINE L2 3185 3271 -1 2472 184 19 7 chr4 17720888 17721307 -166567355 + MSTA LTR MaLR 1 424 -4 324 303 163 11 chr4 17721472 17721650 -166567012 + MLT1J2 LTR MaLR 80 284 -166 534 141 82 0 chr4 17721693 17721730 -166566932 - MLT2B1 LTR ERVL 0 554 521 258 105 0 0 chr4 17721730 17721768 -166566894 + (CA)n Simple_repeat Simple_repeat 1 38 0 534 141 82 0 chr4 17721768 17721843 -166566819 - MLT2B1 LTR ERVL -33 521 370 236 274 98 59 chr4 17722309 17722411 -166566251 + MIR SINE MIR 35 140 -68 533 318 37 54 chr4 17723671 17723785 -166564877 - L2 LINE L2 -38 3275 3161 294 29 0 0 chr4 17723785 17723820 -166564842 + (TG)n Simple_repeat Simple_repeat 1 35 0 533 318 37 54 chr4 17723820 17724057 -166564605 - L2 LINE L2 -152 3161 2930 2196 162 8 11 chr4 17724089 17724466 -166564196 + MLT1B LTR MaLR 15 390 0 664 268 173 10 chr4 17724749 17725044 -166563618 + LTR16C LTR ERVL 147 489 -2 247 264 0 0 chr4 17725456 17725522 -166563140 - MIR SINE MIR -70 138 86 280 238 158 10 chr4 17725919 17726020 -166562642 - MIR SINE MIR -116 146 31 341 322 41 18 chr4 17726147 17726307 -166562355 + MIR3 SINE MIR 10 143 -65 293 316 44 7 chr4 17726605 17726741 -166561921 + MIR3 SINE MIR 64 204 -4 269 273 164 0 chr4 17727698 17727808 -166560854 + MIR SINE MIR 100 227 -35 245 261 96 76 chr4 17727949 17728106 -166560556 + MIR3 SINE MIR 33 192 -16 601 273 88 19 chr4 17728154 17728370 -166560292 - MIR SINE MIR -10 252 22 335 291 115 20 chr4 17728387 17728535 -166560127 - MIR SINE MIR -91 171 10 2491 145 8 23 chr4 17729203 17729596 -166559066 + MLT1B LTR MaLR 2 388 -2 1770 268 21 60 chr4 17730020 17730587 -166558075 + MLT1H LTR MaLR 3 547 -2 723 320 139 34 chr4 17730738 17731269 -166557393 + MLT1G1 LTR MaLR 1 587 -8 208 328 34 28 chr4 17731279 17731449 -166557213 + MIR SINE MIR 6 177 -31 514 267 9 0 chr4 17732684 17732789 -166555873 + MER115 DNA AcHobo 154 259 -434 265 339 66 0 chr4 17733532 17733653 -166555009 - MIR SINE MIR -85 177 49 518 231 17 34 chr4 17733899 17734016 -166554646 + MLT1E LTR MaLR 51 165 -428 2471 176 0 2 chr4 17734062 17734459 -166554203 + MER57A LTR ERV1 4 399 -4 9571 155 15 1 chr4 17734485 17736864 -166551798 + L1PA13 LINE L1 3701 6144 -19 239 281 0 0 chr4 17736899 17736956 -166551706 + MLT1E LTR MaLR 217 273 -320 1519 211 100 26 chr4 17736968 17737440 -166551222 + LTR49 LTR ERV1 159 572 -23 1570 206 25 13 chr4 17737467 17737782 -166550880 + MLT1E LTR MaLR 275 593 0 264 282 0 14 chr4 17737849 17737920 -166550742 + (TG)n Simple_repeat Simple_repeat 2 71 0 742 284 78 4 chr4 17738074 17738306 -166550356 + MIR SINE MIR 13 261 -1 255 292 14 14 chr4 17739163 17739235 -166549427 - MIR SINE MIR -112 96 25 245 360 9 18 chr4 17739285 17739399 -166549263 - MIR SINE MIR -137 125 13 480 307 103 39 chr4 17739756 17740050 -166548612 + LTR16A LTR ERVL 98 447 -3 1238 312 60 22 chr4 17740163 17741217 -166547445 + HERV16 LTR ERVL 127 1258 -3738 832 344 97 16 chr4 17741575 17742313 -166546349 + HERV16 LTR ERVL 1742 2547 -2542 950 352 28 46 chr4 17742346 17743203 -166545459 + HERV16 LTR ERVL 2994 3527 -1469 1205 355 45 33 chr4 17743323 17744177 -166544485 + HERV16 LTR ERVL 4052 4915 -849 239 159 45 0 chr4 17744234 17744278 -166544384 - Tigger4(Zombi) DNA MER2_type -223 2508 2463 330 236 18 45 chr4 17744477 17744587 -166544075 + HERV16 LTR ERVL 4787 4893 -103 298 279 156 13 chr4 17744840 17745077 -166543585 + LTR16B LTR ERVL 134 449 -1 288 308 85 15 chr4 17745462 17745592 -166543070 - L2 LINE L2 -13 3259 3121 2228 56 42 7 chr4 17745747 17746032 -166542630 + AluY SINE Alu 1 295 -16 220 239 15 15 chr4 17746776 17746843 -166541819 + GA-rich Low_complexity Low_complexity 4 70 0 2348 61 11 0 chr4 17747501 17747811 -166540851 + AluY SINE Alu 1 313 0 2058 143 143 13 chr4 17748087 17748466 -166540196 - MSTA LTR MaLR 0 428 1 2405 211 16 21 chr4 17748547 17749059 -166539603 - MER89 LTR ERV1 0 559 51 476 219 74 60 chr4 17749443 17749658 -166539004 - MER89 LTR ERV1 -340 219 2 213 300 62 12 chr4 17749659 17749739 -166538923 - MIR SINE MIR -59 203 120 2088 153 54 6 chr4 17750732 17751086 -166537576 - MLT1B LTR MaLR -7 383 13 232 367 55 23 chr4 17753231 17753359 -166535303 - MIR SINE MIR -111 151 20 218 245 0 20 chr4 17753720 17753769 -166534893 + MIR3 SINE MIR 148 195 -13 447 289 174 64 chr4 17755896 17756305 -166532357 + L2 LINE L2 2857 3310 -3 324 383 0 0 chr4 17756730 17756850 -166531812 - L1ME LINE L1 -447 5723 5604 225 264 28 14 chr4 17757029 17757101 -166531561 + (TATATG)n Simple_repeat Simple_repeat 6 78 0 401 301 107 24 chr4 17757391 17757444 -166531218 - L1M4 LINE L1 -3158 2988 2941 1975 143 24 0 chr4 17757444 17757731 -166530931 - AluSx SINE Alu -18 294 1 401 301 107 24 chr4 17757731 17757966 -166530696 - L1M4 LINE L1 -3205 2941 2676 417 276 127 56 chr4 17758031 17758332 -166530330 - L1M4 LINE L1 -3594 2552 2215 2313 93 0 0 chr4 17758332 17758632 -166530030 + AluY SINE Alu 1 300 -11 417 276 127 56 chr4 17758632 17758725 -166529937 - L1M4 LINE L1 -3931 2215 2130 314 260 114 24 chr4 17759500 17759623 -166529039 - MLT1J2 LTR MaLR -37 413 280 26 0 0 0 chr4 17760137 17760163 -166528499 + AT_rich Low_complexity Low_complexity 1 26 0 281 334 50 68 chr4 17761325 17761601 -166527061 - L2 LINE L2 -280 2992 2722 1975 194 60 34 chr4 17761727 17762144 -166526518 - MSTA LTR MaLR 0 428 1 210 204 45 0 chr4 17762422 17762466 -166526196 - L2 LINE L2 0 3272 3227 500 331 37 34 chr4 17762506 17762802 -166525860 - LTR16A1 LTR ERVL -14 443 147 2357 149 36 48 chr4 17763440 17763768 -166524894 - L1MA5A LINE L1 -4 6293 5972 679 220 0 0 chr4 17763768 17763886 -166524776 - FLAM_C SINE Alu -15 118 1 2357 149 36 48 chr4 17763886 17764060 -166524602 - L1MA5A LINE L1 -325 5972 5797 333 0 0 0 chr4 17764061 17764098 -166524564 + (TG)n Simple_repeat Simple_repeat 2 38 0 5321 72 11 23 chr4 17764490 17765226 -166523436 + L1PA7 LINE L1 5426 6152 -2 4441 39 2 0 chr4 17765573 17766112 -166522550 - L1PA4 LINE L1 -2 6153 5614 288 288 122 7 chr4 17767750 17767889 -166520773 + L1MC/D LINE L1 5615 5769 -2039 294 29 0 0 chr4 17768016 17768051 -166520611 + (TG)n Simple_repeat Simple_repeat 2 36 0 2143 71 7 3 chr4 17768967 17769263 -166519399 - L1PA7 LINE L1 0 6154 5858 412 320 115 15 chr4 17770903 17771293 -166517369 + ERVL LTR ERVL 4713 5141 -623 240 366 9 36 chr4 17772266 17772378 -166516284 - L2 LINE L2 -828 2486 2378 926 205 87 111 chr4 17773628 17773671 -166514991 - MLT2D LTR ERVL 0 414 372 393 22 0 0 chr4 17773671 17773717 -166514945 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 926 205 87 111 chr4 17773717 17774097 -166514565 - MLT2D LTR ERVL -42 372 1 362 380 80 12 chr4 17774408 17774658 -166514004 - L3 LINE CR1 -8 1569 1303 238 272 78 29 chr4 17775098 17775201 -166513461 + MIR SINE MIR 150 257 -5 959 214 130 101 chr4 17775744 17776259 -166512403 - MLT1F1 LTR MaLR -10 557 3 180 111 0 0 chr4 17776741 17776768 -166511894 + (ATGGTG)n Simple_repeat Simple_repeat 4 30 0 778 256 58 22 chr4 17777174 17777397 -166511265 - MIR SINE MIR -20 242 12 229 338 78 60 chr4 17777460 17777741 -166510921 - L2 LINE L2 -829 2485 2200 621 242 13 19 chr4 17777746 17777903 -166510759 + MLT1J2 LTR MaLR 43 198 -252 519 229 46 46 chr4 17779440 17779593 -166509069 - MIR SINE MIR -87 175 23 320 319 62 0 chr4 17780422 17780535 -166508127 + MIR SINE MIR 90 209 -53 287 330 75 0 chr4 17781484 17781590 -166507072 + L2 LINE L2 3107 3220 -52 3650 153 146 40 chr4 17781590 17782405 -166506257 + MER4D LTR ERV1 3 903 0 582 104 17 17 chr4 17782614 17782729 -166505933 + (GGAA)n Simple_repeat Simple_repeat 2 116 0 254 268 73 57 chr4 17782932 17783055 -166505607 + MIR SINE MIR 17 141 -67 298 378 19 7 chr4 17783504 17783695 -166504967 + MIR SINE MIR 15 206 -56 1345 206 41 25 chr4 17783851 17784312 -166504350 + MLT2B2 LTR ERVL 1 515 0 21 0 0 0 chr4 17785400 17785421 -166503241 + AT_rich Low_complexity Low_complexity 1 21 0 634 336 67 30 chr4 17785469 17785799 -166502863 + L2 LINE L2 2635 2976 -338 4505 157 43 27 chr4 17787053 17787940 -166500722 - L1MA8 LINE L1 -55 6236 5328 1556 196 7 11 chr4 17787940 17788255 -166500407 - AluSx SINE Alu 0 312 14 4505 157 43 27 chr4 17788255 17788410 -166500252 - L1MA8 LINE L1 -963 5328 5177 2364 171 28 2 chr4 17788407 17788880 -166499782 + L1MA8 LINE L1 4726 5210 -936 * 539 205 9 0 chr4 17788884 17788996 -166499666 - MIR SINE MIR -64 198 86 395 216 73 103 chr4 17790848 17791052 -166497610 - MER106A DNA MER1_type -37 199 2 407 313 13 27 chr4 17791821 17791971 -166496691 + MIR3 SINE MIR 54 201 -7 225 376 6 6 chr4 17792162 17792327 -166496335 + GA-rich Low_complexity Low_complexity 2 166 0 294 319 25 13 chr4 17792354 17792511 -166496151 + (CAGAGA)n Simple_repeat Simple_repeat 2 160 0 238 310 28 0 chr4 17793472 17793543 -166495119 + L2 LINE L2 3236 3308 -5 181 250 77 19 chr4 17793988 17794040 -166494622 + L2 LINE L2 3259 3313 0 180 0 0 0 chr4 17794328 17794348 -166494314 + (A)n Simple_repeat Simple_repeat 1 20 0 345 303 174 13 chr4 17795314 17795469 -166493193 - MIR SINE MIR -5 257 78 731 243 27 5 chr4 17795472 17795657 -166493005 - MER5A DNA MER1_type 0 189 1 205 242 20 121 chr4 17795751 17795850 -166492812 - MIR SINE MIR -102 160 72 224 345 0 17 chr4 17797611 17797727 -166490935 + CT-rich Low_complexity Low_complexity 4 117 0 1008 224 0 0 chr4 17797819 17798020 -166490642 - MLT1B LTR MaLR 0 390 190 345 109 0 0 chr4 17798022 17798077 -166490585 + (GA)n Simple_repeat Simple_repeat 1 55 0 527 240 35 23 chr4 17798087 17798258 -166490404 - MLT1B LTR MaLR -215 175 3 211 303 30 15 chr4 17798280 17798346 -166490316 + MIR3 SINE MIR 108 174 -34 236 343 112 12 chr4 17799510 17799761 -166488901 + LTR16A LTR ERVL 175 450 0 702 222 155 4 chr4 17799996 17800234 -166488428 - MLT1E1 LTR MaLR -1 653 351 467 94 0 0 chr4 17800278 17800342 -166488320 - MLT1E1 LTR MaLR -391 263 200 380 181 14 0 chr4 17800342 17800414 -166488248 - MLT1E1 LTR MaLR -416 238 166 417 308 127 9 chr4 17800459 17800680 -166487982 - MLT1I LTR MaLR -162 247 1 243 0 0 0 chr4 17802096 17802123 -166486539 + (A)n Simple_repeat Simple_repeat 1 27 0 322 41 0 0 chr4 17803333 17803377 -166485285 + MADE1 DNA Mariner 41 79 -1 905 124 0 51 chr4 17804684 17804821 -166483841 - FLAM_C SINE Alu -3 130 1 336 268 37 0 chr4 17804875 17804957 -166483705 - L2 LINE L2 -2 3270 3186 205 370 14 0 chr4 17805055 17805128 -166483534 - MIR SINE MIR -68 140 67 350 303 48 28 chr4 17805144 17805289 -166483373 - LTR33 LTR ERVL 0 521 374 466 128 13 13 chr4 17805294 17805372 -166483290 + MADE1 DNA Mariner 3 80 0 490 304 87 27 chr4 17805412 17805631 -166483031 - LTR33 LTR ERVL -263 260 60 243 247 34 130 chr4 17805846 17805992 -166482670 - MLT1I-int LTR MaLR -208 1163 1032 43480 35 21 1 chr4 17806392 17812424 -166476238 + L1PA2 LINE L1 1 6155 0 877 263 75 11 chr4 17812483 17812764 -166475898 + ERVL-E LTR ERVL 5138 5436 -328 406 270 0 11 chr4 17813072 17813161 -166475501 + MLT2E LTR ERVL 32 119 -509 308 255 0 69 chr4 17813381 17813483 -166475179 + MLT1H LTR MaLR 453 547 -2 383 197 14 0 chr4 17813552 17813623 -166475039 + Tigger2 DNA MER2_type 1 72 -2646 250 290 0 0 chr4 17813844 17813913 -166474749 - MIR SINE MIR -85 177 109 240 157 0 39 chr4 17814206 17814257 -166474405 + Tigger2 DNA MER2_type 2284 2332 -386 223 290 118 11 chr4 17814370 17814463 -166474199 + L2 LINE L2 3166 3268 -4 330 343 230 10 chr4 17814574 17814778 -166473884 + MIR SINE MIR 3 251 -11 254 321 0 0 chr4 17815257 17815341 -166473321 + MIR SINE MIR 109 192 -70 254 314 29 19 chr4 17815389 17815494 -166473168 + L2 LINE L2 2712 2817 -497 8206 23 2 0 chr4 17815624 17816567 -166472095 + L1PA3 LINE L1 5211 6155 0 1741 189 0 3 chr4 17817509 17817811 -166470851 - AluJb SINE Alu -8 304 4 2330 149 28 6 chr4 17818066 17818422 -166470240 - THE1B LTR MaLR 0 364 1 10978 105 13 60 chr4 17818422 17820076 -166468586 - THE1B-int LTR MaLR 0 1580 4 2515 140 20 0 chr4 17820078 17820435 -166468227 - THE1B LTR MaLR 0 364 1 478 283 146 29 chr4 17820991 17821306 -166467356 + L3 LINE CR1 1142 1493 -84 373 389 79 5 chr4 17821325 17821541 -166467121 + L3 LINE CR1 1261 1492 -85 775 229 81 18 chr4 17821696 17821919 -166466743 - MIR SINE MIR -21 241 5 267 227 0 0 chr4 17822322 17822388 -166466274 + GA-rich Low_complexity Low_complexity 4 69 0 317 237 0 54 chr4 17822914 17823007 -166465655 - MIR3 SINE MIR -7 201 114 2106 247 65 19 chr4 17823700 17824344 -166464318 + L1MC4a LINE L1 6912 7585 -223 207 0 0 0 chr4 17824350 17824373 -166464289 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 831 237 6 0 chr4 17824374 17824551 -166464111 + AluJo SINE Alu 123 300 -12 718 227 27 41 chr4 17824576 17824796 -166463866 + L1MD3 LINE L1 7773 7989 -6 189 0 0 0 chr4 17824796 17824817 -166463845 + (GAA)n Simple_repeat Simple_repeat 1 21 0 1020 145 10 97 chr4 17825022 17825229 -166463433 + AluJo SINE Alu 94 282 -30 29 28 0 0 chr4 17825236 17825272 -166463390 + AT_rich Low_complexity Low_complexity 1 36 0 2170 136 0 0 chr4 17825877 17826179 -166462483 + AluSx SINE Alu 1 302 -10 266 288 224 0 chr4 17826523 17826648 -166462014 - L2 LINE L2 -229 3043 2891 728 177 48 0 chr4 17826663 17826787 -166461875 + FLAM_C SINE Alu 3 132 -1 2199 117 0 0 chr4 17826959 17827257 -166461405 + AluSx SINE Alu 1 298 -14 207 0 0 0 chr4 17827383 17827406 -166461256 + (A)n Simple_repeat Simple_repeat 1 23 0 519 282 23 50 chr4 17827671 17827891 -166460771 - MIR SINE MIR 0 262 49 232 333 46 9 chr4 17828420 17828528 -166460134 - MIR SINE MIR -150 112 1 449 259 56 7 chr4 17829201 17829344 -166459318 - LTR67 LTR ERVL 0 557 408 227 300 100 0 chr4 17829573 17829643 -166459019 + MIR SINE MIR 36 112 -96 354 328 76 12 chr4 17829865 17830036 -166458626 + MIR SINE MIR 48 229 -33 1812 215 104 7 chr4 17831945 17832368 -166456294 + MLT1C LTR MaLR 4 467 0 259 276 31 31 chr4 17832538 17832636 -166456026 - MIR SINE MIR -133 129 32 303 264 182 9 chr4 17833423 17833533 -166455129 + MIR SINE MIR 16 144 -64 1519 184 21 3 chr4 17834228 17834511 -166454151 - AluJo SINE Alu -24 288 1 204 326 67 0 chr4 17834633 17834722 -166453940 + L3 LINE CR1 1261 1355 -222 225 347 20 0 chr4 17835487 17835585 -166453077 + MIR SINE MIR 162 261 -1 271 310 225 14 chr4 17836294 17836589 -166452073 + L2 LINE L2 2714 3070 -243 261 0 0 0 chr4 17836673 17836702 -166451960 + (CA)n Simple_repeat Simple_repeat 2 30 0 3337 102 7 9 chr4 17837426 17837885 -166450777 - L1PA13 LINE L1 -3 6160 5703 360 81 32 0 chr4 17837885 17837947 -166450715 + L1P LINE L1 5267 5330 -824 320 355 31 0 chr4 17838761 17838932 -166449730 - MIR SINE MIR -63 145 4 343 259 14 109 chr4 17840842 17840989 -166447673 + MIR SINE MIR 29 161 -101 6227 42 3 1 chr4 17841897 17842605 -166446057 - L1PA5 LINE L1 -4 6150 5442 2712 164 9 2 chr4 17842657 17843109 -166445553 + L1PA13 LINE L1 5709 6163 0 289 273 149 19 chr4 17844605 17844759 -166443903 + LTR16A LTR ERVL 277 450 0 759 215 193 34 chr4 17844996 17845463 -166443199 - MLT1E1 LTR MaLR -1 653 72 489 308 127 9 chr4 17845460 17845681 -166442981 - MLT1I LTR MaLR -162 247 1 * 369 0 0 0 chr4 17847092 17847133 -166441529 + (A)n Simple_repeat Simple_repeat 1 41 0 322 41 0 0 chr4 17848344 17848388 -166440274 + MADE1 DNA Mariner 41 79 -1 905 124 0 51 chr4 17849695 17849832 -166438830 - FLAM_C SINE Alu -3 130 1 336 268 37 0 chr4 17849886 17849968 -166438694 - L2 LINE L2 -2 3270 3186 205 370 14 0 chr4 17850066 17850139 -166438523 - MIR SINE MIR -68 140 67 350 303 48 28 chr4 17850155 17850300 -166438362 - LTR33 LTR ERVL 0 521 374 466 128 13 13 chr4 17850305 17850383 -166438279 + MADE1 DNA Mariner 3 80 0 499 303 85 32 chr4 17850423 17850643 -166438019 - LTR33 LTR ERVL -263 260 60 243 247 34 130 chr4 17850858 17851004 -166437658 - MLT1I-int LTR MaLR -208 1163 1032 525 322 22 4 chr4 17851125 17851352 -166437310 + HERVL-E LTR ERVL 4751 4981 -673 30933 33 13 1 chr4 17851405 17857437 -166431225 + L1PA2 LINE L1 1 6155 0 877 263 75 11 chr4 17857496 17857777 -166430885 + HERVL-E LTR ERVL 5138 5436 -328 390 281 0 11 chr4 17858085 17858174 -166430488 + MLT2E LTR ERVL 32 119 -509 308 255 0 69 chr4 17858394 17858496 -166430166 + MLT1H LTR MaLR 453 547 -2 383 197 14 0 chr4 17858565 17858636 -166430026 + Tigger2 DNA MER2_type 1 72 -2646 250 290 0 0 chr4 17858857 17858926 -166429736 - MIR SINE MIR -85 177 109 240 157 0 39 chr4 17859219 17859270 -166429392 + Tigger2 DNA MER2_type 2284 2332 -386 223 290 118 11 chr4 17859383 17859476 -166429186 + L2 LINE L2 3166 3268 -4 330 343 230 10 chr4 17859587 17859791 -166428871 + MIR SINE MIR 3 251 -11 254 321 0 0 chr4 17860270 17860354 -166428308 + MIR SINE MIR 109 192 -70 254 314 29 19 chr4 17860402 17860507 -166428155 + L2 LINE L2 2712 2817 -497 8134 21 1 0 chr4 17860637 17861604 -166427058 + L1PA3 LINE L1 5211 6178 0 31 0 0 0 chr4 17861616 17861647 -166427015 + AT_rich Low_complexity Low_complexity 1 31 0 214 214 0 71 chr4 17862020 17862076 -166426586 + L2 LINE L2 3262 3313 0 461 286 89 33 chr4 17862843 17863056 -166425606 + MIR SINE MIR 38 262 0 1771 249 15 36 chr4 17863380 17863857 -166424805 + MLT1C LTR MaLR 1 467 0 261 163 0 0 chr4 17865424 17865473 -166423189 + (CA)n Simple_repeat Simple_repeat 1 49 0 197 299 51 66 chr4 17865708 17865845 -166422817 + MIR SINE MIR 89 223 -39 260 320 117 8 chr4 17866121 17866249 -166422413 + MIR3 SINE MIR 11 152 -56 490 319 38 0 chr4 17866487 17866647 -166422015 + MIR SINE MIR 60 225 -37 351 316 38 15 chr4 17866777 17866910 -166421752 + L2 LINE L2 3136 3271 -1 557 282 26 13 chr4 17866921 17867077 -166421585 - MER5B DNA MER1_type -1 177 20 222 274 0 0 chr4 17867759 17867810 -166420852 + GA-rich Low_complexity Low_complexity 5 55 0 259 313 0 12 chr4 17867957 17868037 -166420625 - L2 LINE L2 -12 3301 3223 234 274 68 41 chr4 17868078 17868151 -166420511 + L2 LINE L2 3198 3272 0 926 216 95 54 chr4 17868373 17868688 -166419974 - MLT1H LTR MaLR -221 328 1 875 285 11 31 chr4 17869020 17869280 -166419382 - MIR SINE MIR -5 257 3 2286 102 0 16 chr4 17870370 17870684 -166417978 + AluSp SINE Alu 1 309 -4 218 32 32 0 chr4 17871758 17871789 -166416873 + (TG)n Simple_repeat Simple_repeat 2 33 0 3481 169 22 45 chr4 17871923 17872657 -166416005 + L1MA10 LINE L1 5616 6332 -2 375 23 0 0 chr4 17873695 17873739 -166414923 + (CA)n Simple_repeat Simple_repeat 2 45 0 2556 126 8 126 chr4 17873850 17874376 -166414286 + LTR24 LTR ERV1 2 465 -2 591 295 58 35 chr4 17874644 17874902 -166413760 + MLT2F LTR ERVL 4 267 -396 1094 232 146 34 chr4 17874960 17875343 -166413319 + MLT2F LTR ERVL 237 662 -1 422 310 14 21 chr4 17875779 17875924 -166412738 + MLT1H LTR MaLR 81 224 -325 337 216 21 21 chr4 17876479 17876576 -166412086 - L1ME4a LINE L1 -195 5926 5830 225 262 16 0 chr4 17876875 17876936 -166411726 + (AATTG)n Simple_repeat Simple_repeat 1 62 0 290 335 61 24 chr4 17877649 17877813 -166410849 - MIR SINE MIR -71 191 22 544 300 83 9 chr4 17878671 17878901 -166409761 - MIR SINE MIR 0 262 16 1278 182 16 4 chr4 17879566 17879813 -166408849 + L1PA15 LINE L1 5915 6164 -1 241 386 36 18 chr4 17881648 17881668 -166406994 - L2 LINE L2 -819 2495 2477 2591 157 54 5 chr4 17881668 17882076 -166406586 + MSTA LTR MaLR 1 428 0 241 386 36 18 chr4 17882076 17882278 -166406384 - L2 LINE L2 -837 2477 2269 519 305 90 30 chr4 17882452 17882685 -166405977 + MIR SINE MIR 11 257 -5 1678 150 41 103 chr4 17882978 17883365 -166405297 + MLT1A1 LTR MaLR 3 365 0 390 294 110 12 chr4 17883907 17884070 -166404592 - MIR SINE MIR -73 189 11 397 291 61 61 chr4 17884540 17884633 -166404029 - MIR SINE MIR -51 211 119 2577 184 63 115 chr4 17884633 17885400 -166403262 - LTR8A LTR ERV1 0 727 1 397 291 61 61 chr4 17885400 17885502 -166403160 - MIR SINE MIR -142 120 16 1869 203 38 129 chr4 17885521 17886147 -166402515 + MER21B LTR ERV1 1 569 -294 342 241 63 0 chr4 17886158 17886219 -166402443 - LTR49 LTR ERV1 0 595 530 1871 145 3 3 chr4 17886219 17886502 -166402160 + MER49 LTR ERV1 1 283 -640 1345 201 42 40 chr4 17886533 17886887 -166401775 + MER4D LTR ERV1 549 903 0 * 3191 135 15 25 chr4 17886887 17887429 -166401233 - LTR49 LTR ERV1 -59 536 1 707 237 93 47 chr4 17887429 17887702 -166400960 + MER21B LTR ERV1 576 861 -2 345 75 0 0 chr4 17887934 17887987 -166400675 + (CA)n Simple_repeat Simple_repeat 2 54 0 277 292 22 11 chr4 17888062 17888151 -166400511 + L2 LINE L2 3183 3272 0 286 182 36 0 chr4 17888655 17888710 -166399952 - MER20 DNA MER1_type -49 170 114 1976 135 7 0 chr4 17889008 17889313 -166399349 + AluSx SINE Alu 1 307 0 3013 174 22 15 chr4 17889443 17889982 -166398680 + L1MB2 LINE L1 5619 6161 -10 2137 139 0 0 chr4 17890713 17891015 -166397647 - AluSx SINE Alu -5 307 6 320 258 89 9 chr4 17891336 17891455 -166397207 + MIR3 SINE MIR 79 208 0 239 356 53 8 chr4 17892261 17892393 -166396269 + MIR SINE MIR 84 221 -41 273 306 65 43 chr4 17892856 17893042 -166395620 - MIR SINE MIR -67 195 6 2890 133 11 32 chr4 17893861 17894303 -166394359 - Tigger2a DNA MER2_type -1 433 1 207 0 0 0 chr4 17894336 17894359 -166394303 + (A)n Simple_repeat Simple_repeat 1 23 0 224 299 45 0 chr4 17894559 17894626 -166394036 - L2 LINE L2 -5 3308 3239 232 297 0 0 chr4 17894978 17895052 -166393610 + MIR SINE MIR 176 249 -13 224 284 90 0 chr4 17895211 17895278 -166393384 + L3 LINE CR1 991 1063 -514 661 130 61 0 chr4 17895430 17895545 -166393117 + L1MB4 LINE L1 6059 6180 0 225 298 18 0 chr4 17895569 17895626 -166393036 + L3 LINE CR1 1160 1217 -360 1148 259 60 11 chr4 17896111 17896621 -166392041 - MLT1G3 LTR MaLR 0 590 1 631 184 52 0 chr4 17896827 17896961 -166391701 - MER2 DNA MER2_type -170 69 16 426 69 0 0 chr4 17897101 17897159 -166391503 + (TA)n Simple_repeat Simple_repeat 1 58 0 726 236 133 112 chr4 17897627 17898064 -166390598 + MLT1J LTR MaLR 1 446 -65 378 244 85 30 chr4 17899400 17899564 -166389098 + MER5B DNA MER1_type 3 175 -3 369 0 0 0 chr4 17899573 17899614 -166389048 + (TG)n Simple_repeat Simple_repeat 2 42 0 1512 178 40 0 chr4 17899617 17899915 -166388747 - L1MA9 LINE L1 -165 6147 5838 759 184 7 14 chr4 17899918 17900065 -166388597 + L1MA9 LINE L1 6167 6312 0 2405 175 11 30 chr4 17900707 17901142 -166387520 - MSTB1 LTR MaLR -2 430 4 1685 230 139 19 chr4 17901253 17901644 -166387018 - MER77 LTR ERV1 -35 570 114 2189 118 3 0 chr4 17901644 17901948 -166386714 + AluSx SINE Alu 1 305 -7 1685 230 139 19 chr4 17901948 17902017 -166386645 - MER77 LTR ERV1 -491 114 55 304 228 51 59 chr4 17902055 17902176 -166386486 + MIR SINE MIR 33 151 -62 2123 160 9 15 chr4 17902624 17902961 -166385701 - MER1B DNA MER1_type -2 335 1 2013 107 20 17 chr4 17902981 17903279 -166385383 + AluY SINE Alu 1 299 -12 2462 148 48 10 chr4 17903580 17903992 -166384670 + MSTA LTR MaLR 1 428 0 440 201 14 101 chr4 17904015 17904154 -166384508 - L2 LINE L2 0 3313 3187 449 291 55 6 chr4 17904198 17904363 -166384299 + MIR SINE MIR 69 241 -21 336 292 69 42 chr4 17904579 17904723 -166383939 + MIR3 SINE MIR 13 160 -48 247 273 136 0 chr4 17904727 17904815 -166383847 + MER5B DNA MER1_type 6 105 -73 462 302 137 0 chr4 17904929 17905111 -166383551 - MIR SINE MIR -34 228 22 817 225 26 62 chr4 17905412 17905639 -166383023 - MER20 DNA MER1_type 0 219 1 229 310 55 48 chr4 17906516 17906661 -166382001 + MIR SINE MIR 71 216 -46 244 227 0 62 chr4 17907060 17907157 -166381505 + L1MC4 LINE L1 6613 6703 -1339 275 247 47 0 chr4 17907164 17907249 -166381413 - L1MC4 LINE L1 -1340 6702 6614 242 173 77 0 chr4 17907264 17907316 -166381346 - L1MD3 LINE L1 -1328 6667 6612 237 174 0 0 chr4 17907317 17907363 -166381299 - LTR66 LTR ERVL -171 439 394 3558 170 15 70 chr4 17907564 17908293 -166380369 - LTR8 LTR ERV1 -2 689 1 192 300 42 58 chr4 17908313 17908433 -166380229 - MIR SINE MIR -56 206 89 317 244 12 37 chr4 17908819 17908901 -166379761 - MLT1K LTR MaLR -22 566 487 326 339 71 71 chr4 17908979 17909262 -166379400 - MLT1K LTR MaLR -237 351 69 279 0 0 0 chr4 17909296 17909327 -166379335 + (CA)n Simple_repeat Simple_repeat 2 32 0 302 191 128 21 chr4 17910348 17910442 -166378220 - MIR SINE MIR -56 206 103 224 327 0 0 chr4 17911666 17911721 -166376941 + MIR SINE MIR 48 102 -160 906 226 20 15 chr4 17912135 17912330 -166376332 - MER58A DNA MER1_type 0 224 29 2026 118 18 0 chr4 17912607 17912886 -166375776 - AluSq SINE Alu -25 288 5 956 180 74 21 chr4 17912895 17913084 -166375578 - AluJb SINE Alu -9 303 105 2561 127 70 70 chr4 17913226 17913744 -166374918 - LTR1 LTR ERV1 -267 518 1 712 133 19 0 chr4 17913787 17913892 -166374770 - AluJb SINE Alu -204 108 2 359 281 45 86 chr4 17914226 17914493 -166374169 + MIR SINE MIR 3 256 -6 557 136 107 0 chr4 17915792 17915895 -166372767 - MER53 DNA DNA -75 114 1 209 353 62 86 chr4 17916180 17916424 -166372238 + L2 LINE L2 3032 3269 -3 281 50 0 67 chr4 17916985 17917045 -166371617 + (TA)n Simple_repeat Simple_repeat 2 57 0 2867 164 64 29 chr4 17917051 17917804 -166370858 + MER21A LTR ERV1 1 891 -40 189 0 0 0 chr4 17917804 17917825 -166370837 + (TGG)n Simple_repeat Simple_repeat 3 23 0 2867 164 64 29 chr4 17917825 17917868 -166370794 + MER21A LTR ERV1 891 931 0 1020 268 160 11 chr4 17917911 17918465 -166370197 + L2 LINE L2 2685 3311 -2 335 336 83 23 chr4 17919056 17919273 -166369389 + MIR SINE MIR 20 249 -13 1617 185 3 102 chr4 17920163 17920498 -166368164 + AluJb SINE Alu 1 302 0 21 0 0 0 chr4 17920707 17920728 -166367934 + AT_rich Low_complexity Low_complexity 1 21 0 1040 113 7 0 chr4 17921287 17921428 -166367234 - L1PA10 LINE L1 0 6168 6027 257 294 28 28 chr4 17922164 17922307 -166366355 + L1MC/D LINE L1 5760 5902 -1906 34 24 0 0 chr4 17922482 17922523 -166366139 + AT_rich Low_complexity Low_complexity 1 41 0 249 159 16 32 chr4 17923308 17923371 -166365291 + LTR1 LTR ERV1 2 63 -722 611 98 0 0 chr4 17923371 17923453 -166365209 - L1PA10 LINE L1 -60 6108 6027 3773 155 34 26 chr4 17923781 17924484 -166364178 + LTR1 LTR ERV1 77 785 0 2733 111 8 3 chr4 17924825 17925187 -166363475 + THE1B LTR MaLR 1 364 0 357 308 171 21 chr4 17925258 17925492 -166363170 + MER102a DNA MER1_type 62 330 0 714 264 169 34 chr4 17925513 17925862 -166362800 - MLT1C LTR MaLR 0 467 72 198 0 0 0 chr4 17925868 17925890 -166362772 + (A)n Simple_repeat Simple_repeat 1 22 0 352 314 0 48 chr4 17926795 17926919 -166361743 - MIR SINE MIR -72 136 19 275 343 53 30 chr4 17927487 17927656 -166361006 - L2 LINE L2 -455 2859 2687 216 0 0 0 chr4 17927789 17927813 -166360849 + (A)n Simple_repeat Simple_repeat 1 24 0 282 307 0 0 chr4 17927850 17927951 -166360711 - Charlie8 DNA MER1_type -2245 172 72 537 323 139 19 chr4 17928907 17929254 -166359408 + L2 LINE L2 2677 3057 -256 857 280 72 13 chr4 17929313 17929688 -166358974 + LTR16B LTR ERVL 1 397 -67 359 347 13 13 chr4 17929755 17929905 -166358757 + L2 LINE L2 3159 3308 -5 237 293 0 0 chr4 17930040 17930098 -166358564 + L2 LINE L2 3207 3264 -8 282 305 94 54 chr4 17930218 17930569 -166358093 + L2 LINE L2 2382 2746 -568 8087 29 0 0 chr4 17930989 17932660 -166356002 + L1PA3 LINE L1 4435 6105 -50 196 188 21 21 chr4 17933144 17933192 -166355470 + MIR3 SINE MIR 153 200 -8 194 0 0 37 chr4 17933361 17933388 -166355274 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 344 338 76 31 chr4 17933432 17933855 -166354807 + L1ME4a LINE L1 5616 6057 -64 236 310 0 60 chr4 17934237 17934337 -166354325 + MIR SINE MIR 57 150 -112 222 260 0 65 chr4 17934438 17934515 -166354147 + L2 LINE L2 3196 3267 -5 201 152 0 0 chr4 17935395 17935428 -166353234 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 229 286 0 29 chr4 17935468 17935538 -166353124 - L2 LINE L2 0 3272 3205 351 273 40 0 chr4 17935585 17935684 -166352978 - MIR SINE MIR -158 104 2 228 392 53 12 chr4 17935848 17936019 -166352643 - L2 LINE L2 -226 3046 2869 399 305 19 76 chr4 17936889 17937099 -166351563 - MIR SINE MIR -28 234 37 199 296 61 10 chr4 17937219 17937317 -166351345 + MIR3 SINE MIR 64 166 -42 2317 162 55 0 chr4 17938520 17938902 -166349760 - MER57A LTR ERV1 0 403 1 233 200 20 20 chr4 17938959 17939009 -166349653 + L2 LINE L2 3137 3186 -86 510 17 0 0 chr4 17939046 17939105 -166349557 + (TG)n Simple_repeat Simple_repeat 2 60 0 330 217 43 11 chr4 17939947 17940039 -166348623 - MIR SINE MIR -71 191 97 1332 286 60 40 chr4 17940043 17940342 -166348320 - MLT1L LTR MaLR -6 609 317 1977 202 52 39 chr4 17940342 17940803 -166347859 - MLT1C LTR MaLR 0 467 1 1332 286 60 40 chr4 17940803 17941100 -166347562 - MLT1L LTR MaLR -298 317 1 522 291 44 33 chr4 17941808 17941990 -166346672 + MIR3 SINE MIR 9 192 -16 415 258 121 8 chr4 17942200 17942332 -166346330 - MIR SINE MIR -79 183 37 245 322 87 34 chr4 17942533 17942682 -166345980 + L3 LINE CR1 1367 1523 -54 4658 194 40 34 chr4 17942770 17944646 -166344016 + L1MC2 LINE L1 4332 6223 -121 2153 133 41 32 chr4 17945084 17945453 -166343209 - THE1C LTR MaLR 0 375 4 866 236 10 15 chr4 17945754 17945949 -166342713 + MLT1A1 LTR MaLR 158 351 -14 366 23 0 0 chr4 17946255 17946298 -166342364 + (TC)n Simple_repeat Simple_repeat 1 43 0 270 0 0 0 chr4 17946297 17946327 -166342335 + (CA)n Simple_repeat Simple_repeat 1 30 0 * 325 213 250 0 chr4 17947572 17947680 -166340982 - L2 LINE L2 0 3272 3138 189 328 30 0 chr4 17947979 17948046 -166340616 + L2 LINE L2 3189 3257 -15 292 301 32 0 chr4 17948984 17949077 -166339585 + L1MC5 LINE L1 7040 7135 -826 264 154 13 39 chr4 17949808 17949886 -166338776 + GA-rich Low_complexity Low_complexity 4 79 0 2654 208 49 70 chr4 17949932 17950067 -166338595 + L1MC5 LINE L1 7013 7149 -812 1958 118 21 7 chr4 17950067 17950356 -166338306 + AluSp SINE Alu 4 296 -17 2654 208 49 70 chr4 17950356 17951163 -166337499 + L1MC5 LINE L1 7149 7935 -26 299 284 71 31 chr4 17951659 17951786 -166336876 - L2 LINE L2 -1 3271 3140 2651 149 30 62 chr4 17951838 17952335 -166336327 + L1MB3 LINE L1 5691 6171 -12 401 284 44 30 chr4 17952733 17952982 -166335680 + MLT1L LTR MaLR 335 606 -9 522 309 51 90 chr4 17953008 17953596 -166335066 - L2 LINE L2 -268 3004 2420 585 263 38 0 chr4 17953767 17953927 -166334735 + MLT1G1 LTR MaLR 3 168 -427 787 176 0 8 chr4 17953995 17954114 -166334548 + AluJo SINE Alu 2 119 -193 824 177 44 6 chr4 17954424 17954582 -166334080 + AluJo SINE Alu 129 292 -20 877 276 73 51 chr4 17954637 17954760 -166333902 + MLT1G1 LTR MaLR 157 276 -319 4582 107 22 14 chr4 17954760 17955389 -166333273 + MER51A LTR ERV1 1 634 0 877 276 73 51 chr4 17955389 17955675 -166332987 + MLT1G1 LTR MaLR 276 575 -20 309 288 26 26 chr4 17955708 17955816 -166332846 - MIR SINE MIR -106 102 2 21 0 0 0 chr4 17956140 17956161 -166332501 + AT_rich Low_complexity Low_complexity 1 21 0 197 368 13 46 chr4 17956524 17956676 -166331986 + L2 LINE L2 2944 3090 -182 293 313 100 31 chr4 17956723 17956830 -166331832 - L2 LINE L2 -11 3302 3204 1133 203 28 0 chr4 17956830 17957042 -166331620 + MER20 DNA MER1_type 1 218 -1 293 313 100 31 chr4 17957042 17957193 -166331469 - L2 LINE L2 -109 3204 3026 234 0 0 0 chr4 17957440 17957466 -166331196 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 1995 197 73 11 chr4 17957539 17957976 -166330686 - MLT1C LTR MaLR 0 467 4 272 241 170 27 chr4 17958365 17958477 -166330185 + MIR SINE MIR 119 246 -16 183 314 0 0 chr4 17958444 17958495 -166330167 + L2 LINE L2 3259 3309 -4 * 429 280 20 13 chr4 17959750 17959900 -166328762 - LTR67 LTR ERVL -10 547 397 512 270 0 0 chr4 17960347 17960447 -166328215 - MER81 DNA DNA 0 114 15 293 350 0 10 chr4 17960486 17960589 -166328073 - MIR3 SINE MIR -106 102 1 298 363 6 35 chr4 17960609 17960780 -166327882 + MIR SINE MIR 26 191 -71 865 225 6 11 chr4 17961395 17961573 -166327089 - MER3 DNA MER1_type -79 130 1 737 178 5 129 chr4 17962070 17962272 -166326390 + MER3 DNA MER1_type 1 130 -79 746 136 0 42 chr4 17962275 17962393 -166326269 + AluJo SINE Alu 87 199 -113 399 259 140 31 chr4 17962893 17963086 -166325576 - L3 LINE CR1 -11 1566 1353 24 0 0 0 chr4 17963363 17963387 -166325275 + AT_rich Low_complexity Low_complexity 1 24 0 197 243 14 0 chr4 17963613 17963683 -166324979 + (ATGGTG)n Simple_repeat Simple_repeat 4 74 0 530 287 86 24 chr4 17963710 17963919 -166324743 - MIR SINE MIR -28 234 13 210 286 97 45 chr4 17963980 17964134 -166324528 - L2 LINE L2 -668 2646 2485 2366 79 0 10 chr4 17964595 17964898 -166323764 - AluY SINE Alu -11 300 1 539 273 100 45 chr4 17964908 17965128 -166323534 - MIR SINE MIR -5 257 26 186 205 0 0 chr4 17965155 17965194 -166323468 - L2 LINE L2 -5 3308 3270 21 0 0 0 chr4 17965286 17965307 -166323355 + AT_rich Low_complexity Low_complexity 1 21 0 865 185 47 47 chr4 17966285 17966517 -166322145 + MIR SINE MIR 5 236 -26 180 281 115 43 chr4 17967311 17967450 -166321212 + MIR SINE MIR 61 209 -53 711 236 179 5 chr4 17967476 17967688 -166320974 + MIR SINE MIR 12 260 -2 21 0 0 0 chr4 17968093 17968114 -166320548 + AT_rich Low_complexity Low_complexity 1 21 0 1838 183 10 75 chr4 17968471 17968871 -166319791 + MLT1A2 LTR MaLR 1 374 0 233 73 0 24 chr4 17968983 17969024 -166319638 + (CA)n Simple_repeat Simple_repeat 2 41 0 978 277 71 71 chr4 17969914 17970391 -166318271 - MER21B LTR ERV1 -149 714 238 236 299 144 30 chr4 17971003 17971118 -166317544 - MLT1H LTR MaLR -363 186 45 1743 163 3 16 chr4 17971118 17971431 -166317231 + AluJo SINE Alu 1 309 -3 236 299 144 30 chr4 17971431 17971482 -166317180 - MLT1H LTR MaLR -504 45 1 521 301 150 9 chr4 17971482 17971695 -166316967 - MIR SINE MIR -4 258 16 493 222 56 24 chr4 17971863 17971989 -166316673 + MIR SINE MIR 39 168 -94 629 306 52 4 chr4 17972074 17972306 -166316356 - MIR SINE MIR -5 257 15 218 355 0 0 chr4 17972906 17972968 -166315694 - MIR SINE MIR -138 124 63 278 228 190 0 chr4 17973395 17973474 -166315188 + MLT1J2 LTR MaLR 67 160 -290 276 252 47 28 chr4 17973475 17973582 -166315080 + L1MC/D LINE L1 5625 5733 -2075 234 62 0 0 chr4 17973614 17973646 -166315016 + (CATATA)n Simple_repeat Simple_repeat 5 36 0 4258 150 19 3 chr4 17973776 17974449 -166314213 + L1MC1 LINE L1 5630 6313 -20 430 77 0 31 chr4 17974457 17974522 -166314140 + L1MC1 LINE L1 6266 6328 -5 835 92 503 0 chr4 17975063 17975216 -166313446 + MER30 DNA MER1_type 1 230 0 501 306 149 23 chr4 17975318 17975713 -166312949 + L1ME LINE L1 530 974 -5096 860 142 14 0 chr4 17975715 17975863 -166312799 - L1 LINE L1 -838 5308 5159 478 66 0 0 chr4 17975863 17975924 -166312738 + L1PB4 LINE L1 6085 6145 -11 420 262 112 52 chr4 17975953 17976412 -166312250 + L1ME LINE L1 991 1514 -4747 * 554 277 69 84 chr4 17976389 17976424 -166312238 + L1MB4 LINE L1 5351 5385 -729 2601 121 5 27 chr4 17976424 17976796 -166311866 + THE1B LTR MaLR 1 364 0 554 277 69 84 chr4 17976796 17977374 -166311288 + L1MB4 LINE L1 5385 5923 -191 1524 276 74 22 chr4 17976832 17977028 -166311634 + L1ME3 LINE L1 5463 5647 -517 297 0 0 0 chr4 17977028 17977061 -166311601 + (TG)n Simple_repeat Simple_repeat 2 34 0 1524 276 74 22 chr4 17977061 17977510 -166311152 + L1ME3 LINE L1 5647 6163 -1 291 306 0 0 chr4 17977523 17977608 -166311054 + L1MC4a LINE L1 5827 5911 -1897 554 298 63 21 chr4 17978527 17978718 -166309944 - MER20B DNA MER1_type -19 200 2 374 310 71 0 chr4 17978853 17978966 -166309696 - MER63A DNA MER1_type 0 210 90 277 209 93 35 chr4 17979285 17979371 -166309291 - L2 LINE L2 0 3313 3223 379 286 157 44 chr4 17979665 17979913 -166308749 + L3 LINE CR1 1125 1400 -177 242 316 51 0 chr4 17980733 17980812 -166307850 + L2 LINE L2 3141 3223 -49 211 360 20 10 chr4 17981456 17981556 -166307106 + L3 LINE CR1 1430 1530 -47 2440 105 3 6 chr4 17981597 17981929 -166306733 + L1PA8A LINE L1 5797 6127 -4 203 289 119 69 chr4 17982155 17982314 -166306348 - MIR SINE MIR -76 186 20 3956 188 49 23 chr4 17982420 17983201 -166305461 - MLT1A1-int LTR MaLR -934 801 1 1075 194 144 90 chr4 17983201 17983256 -166305406 - MLT1A1 LTR MaLR 0 365 314 2353 68 0 0 chr4 17983256 17983580 -166305082 + AluY SINE Alu 1 324 0 1075 194 144 90 chr4 17983580 17983869 -166304793 - MLT1A1 LTR MaLR -51 314 1 841 35 9 9 chr4 17984050 17984164 -166304498 + (TAGA)n Simple_repeat Simple_repeat 2 115 0 709 293 40 87 chr4 17984779 17985229 -166303433 + MLT1J1 LTR MaLR 18 446 0 191 219 141 0 chr4 17985528 17985592 -166303070 - MIR SINE MIR -94 168 96 234 246 18 0 chr4 17985929 17985986 -166302676 + MIR SINE MIR 92 149 -113 900 194 51 0 chr4 17986110 17986285 -166302377 - MER5A DNA MER1_type 0 189 6 414 277 39 30 chr4 17988275 17988468 -166300194 + MIR SINE MIR 4 200 -62 4343 150 67 21 chr4 17988781 17989528 -166299134 - LTR39 LTR ERV1 0 783 3 205 250 0 38 chr4 17989669 17989749 -166298913 + (TAA)n Simple_repeat Simple_repeat 2 78 0 2484 129 91 5 chr4 17989838 17990232 -166298430 - MSTA LTR MaLR 0 428 1 1560 191 42 42 chr4 17990906 17991315 -166297347 + L1MA8 LINE L1 5881 6289 -2 237 285 167 42 chr4 17991389 17991533 -166297129 + MER5A DNA MER1_type 1 171 -16 242 388 42 18 chr4 17991812 17991977 -166296685 - L2 LINE L2 -189 3083 2915 289 332 27 62 chr4 17992055 17992311 -166296351 - L2 LINE L2 -510 2804 2558 463 226 39 0 chr4 17992322 17992424 -166296238 + MIR SINE MIR 58 163 -99 685 159 7 7 chr4 17994747 17994892 -166293770 + GA-rich Low_complexity Low_complexity 2 146 0 416 249 40 57 chr4 17995309 17995486 -166293176 + MER104 DNA Tc2 7 180 0 409 182 0 0 chr4 17995492 17995558 -166293104 - MSTA LTR MaLR 0 428 363 2223 137 159 2 chr4 17995562 17995970 -166292692 - THE1C-int LTR MaLR -1108 472 1 1782 165 88 20 chr4 17995970 17996321 -166292341 - THE1C LTR MaLR 0 375 1 1551 175 38 0 chr4 17996663 17996954 -166291708 - MER65A LTR ERV1 -16 429 128 2312 166 0 14 chr4 17996954 17997322 -166291340 - L1PA15 LINE L1 0 6165 5803 320 325 3 32 chr4 17997954 17998067 -166290595 - MIR SINE MIR -94 114 4 429 258 306 0 chr4 17998876 17999105 -166289557 + MER5C DNA MER1_type 26 324 0 208 176 0 0 chr4 17999230 17999264 -166289398 + MER5B DNA MER1_type 104 137 -41 * 438 226 57 32 chr4 17999261 17999385 -166289277 + L2 LINE L2 3186 3312 -1 1622 215 24 110 chr4 17999576 18000059 -166288603 + MLT1D LTR MaLR 1 432 -73 1252 173 138 35 chr4 18000059 18000319 -166288343 - AluJo SINE Alu -14 288 2 1622 215 24 110 chr4 18000319 18000388 -166288274 + MLT1D LTR MaLR 432 505 0 194 319 138 35 chr4 18000494 18000726 -166287936 - L2 LINE L2 -337 2977 2722 1434 230 7 0 chr4 18000726 18001035 -166287627 - L1M4 LINE L1 -937 5209 4899 395 192 0 14 chr4 18001055 18001128 -166287534 - MER96B DNA MER1_type? -164 253 182 5126 175 18 7 chr4 18001157 18002037 -166286625 + MER54A LTR ERVL 9 898 -3 565 203 61 25 chr4 18002037 18002197 -166286465 - MER96B DNA MER1_type? -240 177 11 215 324 83 50 chr4 18002250 18002528 -166286134 + L2 LINE L2 2827 3113 -159 239 301 121 36 chr4 18002562 18002728 -166285934 + L2 LINE L2 3125 3304 -9 195 42 0 0 chr4 18003097 18003121 -166285541 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 214 250 88 0 chr4 18003125 18003193 -166285469 - L2 LINE L2 -6 3266 3193 1118 277 117 13 chr4 18003312 18003782 -166284880 + LTR33 LTR ERVL 3 521 0 652 181 29 0 chr4 18004925 18005063 -166283599 - L1MA8 LINE L1 -4 6287 6146 452 124 58 3 chr4 18004992 18005087 -166283575 - L1MA8 LINE L1 -74 6217 6114 337 299 185 0 chr4 18005063 18005220 -166283442 - L3 LINE CR1 -755 822 637 * 327 322 203 28 chr4 18005231 18005585 -166283077 - L3 LINE CR1 -416 1161 746 727 274 66 72 chr4 18005972 18006414 -166282248 + MLT1J LTR MaLR 5 443 -68 704 302 104 53 chr4 18006674 18006734 -166281928 - L2 LINE L2 -1 3312 3256 524 192 218 6 chr4 18006734 18006890 -166281772 + MER53 DNA DNA 1 189 0 704 302 104 53 chr4 18006890 18007794 -166280868 - L2 LINE L2 -57 3256 2299 253 139 0 0 chr4 18007802 18007845 -166280817 - MIR SINE MIR -102 160 118 380 278 7 42 chr4 18008665 18008809 -166279853 + L2 LINE L2 2944 3082 -190 1136 268 87 22 chr4 18009140 18009510 -166279152 - MSTD LTR MaLR 0 396 3 681 261 0 96 chr4 18009617 18009877 -166278785 + MIR SINE MIR 28 262 0 341 212 186 0 chr4 18010248 18010361 -166278301 - MIR SINE MIR -22 240 107 23 0 0 0 chr4 18011348 18011371 -166277291 + AT_rich Low_complexity Low_complexity 1 23 0 2331 101 0 25 chr4 18011570 18011886 -166276776 + AluSx SINE Alu 1 308 -4 441 271 36 88 chr4 18012155 18012406 -166276256 - L2 LINE L2 -1 3312 3075 2600 99 8 8 chr4 18012453 18012806 -166275856 - THE1A LTR MaLR 0 355 3 12323 101 5 1 chr4 18012808 18014381 -166274281 - THE1A-int LTR MaLR 0 1580 1 2458 121 11 11 chr4 18014381 18014736 -166273926 - THE1A LTR MaLR 0 355 1 315 338 82 68 chr4 18014810 18015029 -166273633 - L2 LINE L2 -373 2941 2720 239 329 73 15 chr4 18015174 18015311 -166273351 - MIR SINE MIR -64 144 15 338 302 156 26 chr4 18015378 18015570 -166273092 - MIR SINE MIR -35 227 11 403 306 144 0 chr4 18015924 18016097 -166272565 - MIR SINE MIR -1 261 64 353 298 26 18 chr4 18016188 18016302 -166272360 + L2 LINE L2 3199 3313 0 195 129 0 0 chr4 18016659 18016690 -166271972 + (GAA)n Simple_repeat Simple_repeat 2 32 0 1991 219 72 12 chr4 18017516 18018018 -166270644 - MER74A LTR ERVL -24 534 3 206 69 0 0 chr4 18018146 18018175 -166270487 + L2 LINE L2 3026 3054 -218 299 267 0 0 chr4 18018469 18018529 -166270133 - MER91 DNA MER1_type -3 187 128 828 215 38 11 chr4 18018600 18018786 -166269876 - MLT1C LTR MaLR -90 377 187 753 202 45 20 chr4 18018778 18018976 -166269686 - MLT1C LTR MaLR -231 236 34 * 709 274 108 34 chr4 18019437 18019824 -166268838 + MLT1J2 LTR MaLR 1 416 -34 245 250 33 0 chr4 18020251 18020311 -166268351 - L2 LINE L2 -655 2659 2598 564 260 151 9 chr4 18020375 18020594 -166268068 - MIR SINE MIR -3 259 10 584 262 16 55 chr4 18021022 18021205 -166267457 + MER5B DNA MER1_type 3 178 0 420 345 58 67 chr4 18021270 18021612 -166267050 - L2 LINE L2 -14 3258 2920 298 292 66 7 chr4 18022019 18022156 -166266506 - L2 LINE L2 -69 3244 3100 1432 246 8 45 chr4 18022182 18022580 -166266082 + MLT2C1 LTR ERVL 13 395 -2 270 352 29 0 chr4 18022580 18022685 -166265977 - L2 LINE L2 -228 3085 2978 267 160 20 0 chr4 18022769 18022819 -166265843 - MIR SINE MIR -71 191 141 2211 178 46 17 chr4 18022837 18023248 -166265414 + L1PB4 LINE L1 5722 6144 -12 32 43 0 0 chr4 18023267 18023313 -166265349 + AT_rich Low_complexity Low_complexity 1 46 0 1702 229 30 39 chr4 18023313 18023700 -166264962 - LTR40a LTR ERVL -5 514 130 1527 119 50 5 chr4 18023700 18023919 -166264743 - MER30 DNA MER1_type -1 229 1 1702 229 30 39 chr4 18023919 18023963 -166264699 - LTR40a LTR ERVL -389 130 87 1691 164 17 14 chr4 18023963 18024250 -166264412 + AluJb SINE Alu 1 288 -24 397 138 21 0 chr4 18024277 18024371 -166264291 + (TA)n Simple_repeat Simple_repeat 1 96 0 380 264 0 11 chr4 18024434 18024525 -166264137 - MIR SINE MIR -109 153 64 304 269 58 10 chr4 18024530 18024634 -166264028 + L2 LINE L2 3169 3277 -36 231 328 62 31 chr4 18024691 18024819 -166263843 - L2 LINE L2 -67 3246 3115 249 247 0 118 chr4 18025024 18025109 -166263553 - MIR SINE MIR -78 184 110 451 284 9 0 chr4 18025496 18025605 -166263057 + MIR3 SINE MIR 85 194 -14 348 159 63 0 chr4 18025725 18025788 -166262874 - MER41A LTR ERV1 0 554 488 241 79 95 0 chr4 18025788 18025851 -166262811 + (TA)n Simple_repeat Simple_repeat 1 69 0 636 86 16 54 chr4 18025851 18026037 -166262625 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 422 207 40 6 chr4 18026063 18026237 -166262425 + (TA)n Simple_repeat Simple_repeat 1 180 0 2832 127 8 42 chr4 18026244 18026715 -166261947 - MER41B LTR ERV1 -180 455 1 1811 337 79 30 chr4 18026831 18028113 -166260549 - L2 LINE L2 -445 2869 1525 226 420 9 9 chr4 18028280 18028392 -166260270 - MIR SINE MIR -60 148 37 296 218 7 20 chr4 18028402 18028549 -166260113 + CT-rich Low_complexity Low_complexity 2 146 0 263 300 18 0 chr4 18029446 18029542 -166259120 + MIR SINE MIR 12 112 -96 2057 128 7 3 chr4 18029601 18029899 -166258763 + AluSq SINE Alu 3 301 -12 277 352 9 0 chr4 18030227 18030332 -166258330 - MIR3 SINE MIR -29 179 74 312 224 71 0 chr4 18030966 18031051 -166257611 - L1MC4 LINE L1 -1339 6703 6613 440 107 39 0 chr4 18031051 18031154 -166257508 + (TA)n Simple_repeat Simple_repeat 2 108 0 190 339 32 113 chr4 18031160 18031408 -166257254 - L2 LINE L2 -31 3241 3014 272 246 138 51 chr4 18032261 18032399 -166256263 - L2 LINE L2 -528 2786 2637 1092 176 11 0 chr4 18032656 18032832 -166255830 + MER58A DNA MER1_type 47 224 0 445 247 129 3 chr4 18032936 18033073 -166255589 + MIR SINE MIR 20 168 -67 294 283 18 71 chr4 18033117 18033230 -166255432 + MIR SINE MIR 152 258 -4 608 269 12 23 chr4 18033351 18033522 -166255140 + MER5A DNA MER1_type 21 189 0 1878 134 0 0 chr4 18033709 18033994 -166254668 + AluSc SINE Alu 20 304 0 201 39 0 0 chr4 18034365 18034391 -166254271 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 37169 38 102 3 chr4 18034391 18039964 -166248698 - L1PA3 LINE L1 -13 6142 1 559 184 8 19 chr4 18040822 18041084 -166247578 + CT-rich Low_complexity Low_complexity 1 259 0 473 242 157 33 chr4 18042129 18042282 -166246380 + MIR SINE MIR 21 192 -70 27 29 0 0 chr4 18042668 18042702 -166245960 + AT_rich Low_complexity Low_complexity 1 34 0 495 325 80 14 chr4 18043128 18043340 -166245322 + MIR SINE MIR 2 227 -35 412 243 66 28 chr4 18043983 18044140 -166244522 + MIR SINE MIR 26 195 -62 493 244 154 0 chr4 18044367 18044523 -166244139 - MIR SINE MIR -18 244 65 2115 191 84 14 chr4 18044538 18045026 -166243636 + Charlie1b DNA MER1_type 2 523 0 351 240 13 0 chr4 18045170 18045245 -166243417 - MIR SINE MIR -108 154 79 265 271 24 35 chr4 18045702 18045787 -166242875 + MLT1L LTR MaLR 144 227 -388 367 267 138 53 chr4 18045863 18046110 -166242552 + MLT1J LTR MaLR 244 511 0 1860 268 68 44 chr4 18046175 18047222 -166241440 + L1MEc LINE L1 872 1943 -4453 4112 250 63 37 chr4 18047253 18048864 -166239798 + L1MEc LINE L1 2339 3990 -2225 1340 213 27 30 chr4 18048857 18049224 -166239438 + L1MEc LINE L1 2323 2688 -3527 * 777 223 110 71 chr4 18049305 18049614 -166239048 + MER57A LTR ERV1 83 403 0 1103 213 39 52 chr4 18049614 18051075 -166237587 + L1MEc LINE L1 2713 4309 -1906 1715 174 59 0 chr4 18051077 18051364 -166237298 + AluJo SINE Alu 1 304 -8 28 0 0 0 chr4 18051394 18051422 -166237240 + AT_rich Low_complexity Low_complexity 1 28 0 2453 82 0 3 chr4 18051495 18051799 -166236863 + AluY SINE Alu 1 303 -8 271 319 59 15 chr4 18051819 18051954 -166236708 + MIR SINE MIR 116 256 -6 237 267 33 0 chr4 18052411 18052471 -166236191 + GA-rich Low_complexity Low_complexity 3 64 0 2166 178 56 22 chr4 18052880 18053329 -166235333 + MLT1C LTR MaLR 4 467 0 396 310 202 5 chr4 18053588 18053791 -166234871 + MIR SINE MIR 13 255 -7 2197 113 0 3 chr4 18053915 18054208 -166234454 - AluSc SINE Alu -17 292 1 1054 225 9 18 chr4 18054936 18055154 -166233508 + MER20 DNA MER1_type 3 218 -1 492 214 55 75 chr4 18055211 18055416 -166233246 + MIR SINE MIR 66 262 0 220 333 10 10 chr4 18056020 18056119 -166232543 - MIR SINE MIR -30 232 134 216 0 0 0 chr4 18056359 18056383 -166232279 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 297 302 56 40 chr4 18056535 18056661 -166232001 - MIR SINE MIR -115 147 20 400 279 19 0 chr4 18057872 18057976 -166230686 - MER81 DNA DNA -4 110 5 2889 72 17 0 chr4 18057976 18058325 -166230337 + THE1A LTR MaLR 1 355 0 12338 103 1 5 chr4 18058325 18059912 -166228750 + THE1A-int LTR MaLR 1 1580 0 2683 96 3 25 chr4 18059912 18060275 -166228387 + THE1A LTR MaLR 1 355 0 665 247 64 30 chr4 18060975 18061242 -166227420 - L1MC5 LINE L1 -26 7935 7660 2564 148 0 0 chr4 18061252 18061616 -166227046 + THE1B LTR MaLR 1 364 0 9944 122 36 39 chr4 18061616 18063194 -166225468 + THE1B-int LTR MaLR 1 1574 -6 2975 88 3 3 chr4 18063199 18063563 -166225099 + THE1B LTR MaLR 1 364 0 740 225 21 38 chr4 18063625 18063861 -166224801 - L1MC5 LINE L1 -427 7534 7303 1559 114 17 8 chr4 18064006 18064243 -166224419 - Tigger5 DNA MER2_type 0 2323 2085 15046 201 13 19 chr4 18064282 18065657 -166223005 + L1PB1 LINE L1 1990 3372 -3800 2248 87 7 13 chr4 18065657 18065955 -166222707 + AluY SINE Alu 1 296 -15 15046 201 13 19 chr4 18065955 18069058 -166219604 + L1PB1 LINE L1 3372 6492 -680 207 0 0 0 chr4 18069058 18069081 -166219581 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 15046 201 13 19 chr4 18069081 18069378 -166219284 + L1PB1 LINE L1 6492 6814 -358 231 114 0 0 chr4 18069378 18069413 -166219249 + (CA)n Simple_repeat Simple_repeat 2 36 0 15046 201 13 19 chr4 18069413 18069683 -166218979 + L1PB1 LINE L1 6814 7084 -88 848 236 27 106 chr4 18069681 18070011 -166218651 - L1MC5 LINE L1 -1047 6914 6611 * 732 262 80 0 chr4 18070442 18070679 -166217983 - MIR SINE MIR -2 260 5 593 64 28 18 chr4 18070933 18071042 -166217620 + (TAGA)n Simple_repeat Simple_repeat 1 110 0 589 329 66 25 chr4 18073046 18073289 -166215373 - L2 LINE L2 -113 3159 2907 326 352 0 0 chr4 18073283 18073388 -166215274 - MIR SINE MIR -110 152 48 * 253 259 0 0 chr4 18073910 18073964 -166214698 + CT-rich Low_complexity Low_complexity 4 57 0 191 319 112 47 chr4 18074984 18075216 -166213446 - L2 LINE L2 -212 3060 2814 284 298 102 42 chr4 18075732 18075932 -166212730 - MIR SINE MIR -50 212 3 180 0 0 0 chr4 18076780 18076800 -166211862 + (TCTCCC)n Simple_repeat Simple_repeat 2 21 0 8406 29 0 197 chr4 18076800 18078257 -166210405 + SVA Other Other 1 1170 -216 297 0 0 0 chr4 18078257 18078290 -166210372 + (A)n Simple_repeat Simple_repeat 1 33 0 271 371 103 0 chr4 18078545 18078758 -166209904 + MIR SINE MIR 22 256 -6 245 343 0 0 chr4 18078872 18078945 -166209717 - L2 LINE L2 -14 3299 3227 203 310 17 17 chr4 18079077 18079135 -166209527 + L2 LINE L2 3163 3220 -52 280 307 114 0 chr4 18080005 18080119 -166208543 - MIR SINE MIR -40 222 96 11439 138 55 10 chr4 18080148 18082241 -166206421 + L1PB1 LINE L1 1130 3319 -3543 6827 172 8 2 chr4 18082254 18084544 -166204118 + L1PB1 LINE L1 4560 6865 -2 315 330 33 33 chr4 18084610 18084825 -166203837 + L1ME LINE L1 4887 5101 -1045 207 253 24 12 chr4 18084864 18084947 -166203715 + (TA)n Simple_repeat Simple_repeat 2 85 0 663 259 52 15 chr4 18084970 18085256 -166203406 + L1ME LINE L1 5215 5511 -653 212 366 73 66 chr4 18085302 18085619 -166203043 + L2 LINE L2 2927 3245 -27 189 283 100 76 chr4 18086238 18086414 -166202248 + MIR3 SINE MIR 10 190 -68 543 332 35 0 chr4 18086457 18086659 -166202003 - MIR SINE MIR -5 257 49 219 364 76 61 chr4 18086742 18086940 -166201722 + L2 LINE L2 3072 3272 0 1007 114 6 0 chr4 18086978 18087144 -166201518 + (TGGA)n Simple_repeat Simple_repeat 3 169 0 2033 230 18 67 chr4 18087475 18088045 -166200617 - MER44D DNA MER2_type -8 597 1 372 248 167 17 chr4 18088364 18088648 -166200014 + LTR50 LTR ERVL 348 519 -4 525 285 70 30 chr4 18088653 18088853 -166199809 - MIR SINE MIR -25 237 30 288 0 0 0 chr4 18089514 18089546 -166199116 + (TG)n Simple_repeat Simple_repeat 2 33 0 210 231 0 19 chr4 18090141 18090193 -166198469 + MIR SINE MIR 100 150 -112 263 372 39 17 chr4 18090242 18090422 -166198240 - MIR SINE MIR -32 230 47 2259 267 111 28 chr4 18091957 18092878 -166195784 + L2 LINE L2 679 1675 -1639 1259 55 103 0 chr4 18092918 18093083 -166195579 + THE1B LTR MaLR 1 182 -182 22 0 0 0 chr4 18093087 18093109 -166195553 + AT_rich Low_complexity Low_complexity 1 22 0 29678 118 23 57 chr4 18093117 18099134 -166189528 + L1PA8 LINE L1 12 5756 -522 2397 88 0 0 chr4 18099134 18099429 -166189233 + AluY SINE Alu 1 295 -16 29678 118 23 57 chr4 18099429 18099935 -166188727 + L1PA8 LINE L1 5756 6278 0 1067 113 54 48 chr4 18099936 18100122 -166188540 + THE1B LTR MaLR 178 364 0 372 158 158 0 chr4 18100129 18100211 -166188451 - AluSg/x SINE Alu 0 302 208 3026 280 84 31 chr4 18100212 18101702 -166186960 + L2 LINE L2 1740 3313 0 1085 161 0 0 chr4 18101993 18102161 -166186501 + AluJb SINE Alu 134 301 -11 805 289 31 0 chr4 18102729 18102957 -166185705 + MIR SINE MIR 15 249 -13 815 226 38 77 chr4 18103019 18103375 -166185287 + MLT1H LTR MaLR 33 330 -212 641 178 134 45 chr4 18103391 18103593 -166185069 + MER20B DNA MER1_type 537 756 -27 258 32 0 0 chr4 18103813 18103839 -166184823 + (TG)n Simple_repeat Simple_repeat 1 57 0 258 32 0 0 chr4 18103839 18103870 -166184792 + (TG)n Simple_repeat Simple_repeat 2 32 0 326 240 173 39 chr4 18104364 18104571 -166184091 - MIR SINE MIR -6 256 15 554 241 48 0 chr4 18104605 18104750 -166183912 + MIR SINE MIR 86 237 -25 351 222 19 56 chr4 18105130 18105238 -166183424 - MIR3 SINE MIR -17 191 88 678 296 63 67 chr4 18105554 18105618 -166183044 + L2 LINE L2 2704 2767 -505 2544 48 0 6 chr4 18105618 18105930 -166182732 + AluY SINE Alu 1 310 -1 678 296 63 67 chr4 18105930 18106441 -166182221 + L2 LINE L2 2767 3272 0 295 208 49 132 chr4 18106953 18107097 -166181565 - L2 LINE L2 0 3313 3182 2094 155 40 28 chr4 18107317 18107863 -166180799 - MLT2A2 LTR ERVL 0 554 1 487 266 39 0 chr4 18107921 18108049 -166180613 + MIR3 SINE MIR 8 140 -68 668 335 88 29 chr4 18108054 18108472 -166180190 + LTR16B LTR ERVL 1 443 -21 1761 155 16 47 chr4 18108764 18109086 -166179576 + AluJb SINE Alu 1 312 0 3589 123 2 6 chr4 18109121 18109664 -166178998 - L1PA16 LINE L1 -9 6157 5617 275 300 80 10 chr4 18112062 18112162 -166176500 + L2 LINE L2 3202 3308 -5 201 74 0 0 chr4 18112487 18112514 -166176148 + (AACTG)n Simple_repeat Simple_repeat 1 27 0 29 28 0 0 chr4 18112994 18113030 -166175632 + AT_rich Low_complexity Low_complexity 1 36 0 192 291 97 30 chr4 18113172 18113306 -166175356 - MIR SINE MIR -50 212 70 195 250 53 26 chr4 18113366 18113442 -166175220 - MIR SINE MIR -42 220 143 4561 195 44 67 chr4 18113499 18114270 -166174392 + L1MD1 LINE L1 4421 5208 -1034 250 132 0 0 chr4 18114270 18114308 -166174354 - 5S rRNA rRNA -81 40 3 3065 82 29 13 chr4 18114308 18114762 -166173900 + L1MA1 LINE L1 5842 6302 0 4561 195 44 67 chr4 18114762 18115828 -166172834 + L1MD1 LINE L1 5206 6242 0 536 319 85 35 chr4 18116318 18116497 -166172165 + LTR16A LTR ERVL 20 189 -261 1530 214 87 16 chr4 18116497 18116867 -166171795 - MSTD LTR MaLR 0 396 1 536 319 85 35 chr4 18116867 18117088 -166171574 + LTR16A LTR ERVL 189 440 -10 1691 58 4 46 chr4 18117126 18117367 -166171295 - L1PA10 LINE L1 0 6168 5938 1162 333 39 34 chr4 18117383 18117996 -166170666 + HERV16 LTR ERVL 40 655 -4341 1748 256 30 7 chr4 18118070 18118507 -166170155 + MER21B LTR ERV1 98 544 -319 1217 133 0 0 chr4 18118684 18118857 -166169805 + AluJb SINE Alu 1 173 -139 1456 168 0 0 chr4 18118860 18119092 -166169570 + AluJb SINE Alu 74 305 -7 207 310 130 10 chr4 18119781 18119881 -166168781 + MIR SINE MIR 34 145 -63 342 301 183 18 chr4 18121350 18121569 -166167093 - MIR SINE MIR -3 259 5 357 283 21 14 chr4 18122201 18122346 -166166316 - MER117 DNA MER1_type -49 148 3 365 310 54 8 chr4 18122875 18123039 -166165623 - MIR SINE MIR -57 151 8 210 238 36 83 chr4 18123873 18123957 -166164705 - L2 LINE L2 -800 2514 2435 1582 198 105 5 chr4 18125349 18125758 -166162904 - MLT1C LTR MaLR -12 455 6 538 272 15 67 chr4 18126202 18126248 -166162414 - MIR SINE MIR 0 262 215 1272 179 27 62 chr4 18126248 18126584 -166162078 - MER33 DNA MER1_type 0 324 1 538 272 15 67 chr4 18126584 18126732 -166161930 - MIR SINE MIR -47 215 78 252 59 0 0 chr4 18126886 18126920 -166161742 + (CA)n Simple_repeat Simple_repeat 2 35 0 256 313 96 60 chr4 18126941 18127107 -166161555 - MER5A DNA MER1_type -6 183 12 * 342 277 143 9 chr4 18127096 18127208 -166161454 - MER5B DNA MER1_type -5 173 47 1730 203 158 49 chr4 18127344 18127757 -166160905 - MER76 LTR ERV -34 654 156 1994 110 0 7 chr4 18127757 18128062 -166160600 - AluSc SINE Alu 0 303 1 1730 203 158 49 chr4 18128062 18128237 -166160425 - MER76 LTR ERV -532 156 1 459 288 53 43 chr4 18128546 18128827 -166159835 - MLT1K LTR MaLR -106 482 199 1742 163 49 0 chr4 18129087 18129375 -166159287 + AluSx SINE Alu 1 302 -10 273 247 21 52 chr4 18129527 18129624 -166159038 - MIR SINE MIR -128 134 41 1872 52 8 24 chr4 18130103 18130351 -166158311 + L1PA6 LINE L1 5907 6150 -4 412 299 37 30 chr4 18130582 18130746 -166157916 + MIR SINE MIR 3 167 -95 377 250 55 23 chr4 18131116 18131229 -166157433 - MIR3 SINE MIR -1 207 88 2358 97 3 0 chr4 18131229 18131539 -166157123 - AluY SINE Alu 0 311 1 377 250 55 23 chr4 18131539 18131553 -166157109 - MIR3 SINE MIR -120 88 76 1968 192 27 64 chr4 18132350 18132834 -166155828 + MLT1C LTR MaLR 1 466 -1 572 316 23 35 chr4 18133801 18134057 -166154605 - MIR SINE MIR -8 254 2 953 198 39 0 chr4 18134272 18134581 -166154081 + L1MA9 LINE L1 6072 6389 0 283 263 13 13 chr4 18134505 18134615 -166154047 + GA-rich Low_complexity Low_complexity 4 113 0 279 264 11 0 chr4 18135015 18135102 -166153560 + L1ME4a LINE L1 5762 5849 -272 1000 101 5 139 chr4 18135103 18135312 -166153350 - LTR9 LTR ERV1 0 612 432 1432 99 0 0 chr4 18135316 18135498 -166153164 + AluY SINE Alu 1 182 -129 2981 101 16 0 chr4 18135536 18135970 -166152692 - LTR9 LTR ERV1 -171 441 1 645 221 61 9 chr4 18136003 18136234 -166152428 + L1ME4a LINE L1 5879 6121 0 226 259 35 47 chr4 18136321 18136406 -166152256 + MIR3 SINE MIR 97 180 -28 396 217 163 90 chr4 18137469 18137640 -166151022 + MIR SINE MIR 3 184 -58 10369 194 20 3 chr4 18137642 18140567 -166148095 + L1PA13 LINE L1 3220 6163 0 1681 220 25 8 chr4 18140666 18141025 -166147637 + MLT1A1 LTR MaLR 1 365 0 733 269 33 5 chr4 18141119 18141378 -166147284 + L1ME3 LINE L1 5709 5978 -184 481 185 0 0 chr4 18141397 18141478 -166147184 - MER81 DNA DNA -15 99 19 233 188 43 103 chr4 18141531 18141648 -166147014 + L1ME3 LINE L1 5994 6103 -59 509 184 48 8 chr4 18142818 18142943 -166145719 - L1ME2 LINE L1 -9 6155 6026 1676 236 34 9 chr4 18143554 18144021 -166144641 - L1ME2 LINE L1 -1 6163 5685 345 315 58 12 chr4 18144017 18144274 -166144388 + L1ME4a LINE L1 5691 5959 -162 * 384 337 86 7 chr4 18144585 18144876 -166143786 + L2 LINE L2 2546 2859 -455 287 380 25 4 chr4 18144918 18145144 -166143518 + L1MA7 LINE L1 374 628 -4722 13552 171 25 32 chr4 18145263 18148378 -166140284 + L1PA13 LINE L1 2596 5731 -1134 1912 82 0 4 chr4 18148378 18148623 -166140039 + AluSq SINE Alu 63 306 -7 13552 171 25 32 chr4 18148623 18148708 -166139954 + L1PA13 LINE L1 5731 5815 -1050 1405 180 149 7 chr4 18148708 18149003 -166139659 + MER1B DNA MER1_type 1 337 0 13552 171 25 32 chr4 18149003 18150100 -166138562 + L1PA13 LINE L1 5815 6863 -2 4292 162 16 12 chr4 18150101 18150923 -166137739 + L1MA4 LINE L1 5463 6287 -13 2366 279 54 39 chr4 18151155 18152667 -166135995 + L1MA7 LINE L1 827 2005 -4345 205 310 17 17 chr4 18153225 18153283 -166135379 - L2 LINE L2 -52 3220 3163 253 343 0 0 chr4 18153415 18153488 -166135174 + L2 LINE L2 3227 3299 -14 307 371 103 0 chr4 18153602 18153815 -166134847 - MIR SINE MIR -6 256 22 288 0 0 0 chr4 18154070 18154102 -166134560 + (T)n Simple_repeat Simple_repeat 1 32 0 2230 116 0 0 chr4 18154102 18154403 -166134259 - SVA Other Other -216 1170 870 279 0 0 0 chr4 18154597 18154628 -166134034 + (T)n Simple_repeat Simple_repeat 1 31 0 4582 63 8 135 chr4 18154628 18155765 -166132897 - SVA Other Other -683 1170 433 3611 239 48 11 chr4 18155865 18156905 -166131757 + L1MA7 LINE L1 2081 3186 -3164 2211 84 3 20 chr4 18156905 18157202 -166131460 + AluSp SINE Alu 21 312 -1 3611 239 48 11 chr4 18157202 18157497 -166131165 + L1MA7 LINE L1 3186 3469 -2881 5298 164 16 24 chr4 18157614 18157923 -166130739 + L1MA7 LINE L1 5171 5481 -1014 2078 152 45 31 chr4 18157923 18158279 -166130383 - THE1B LTR MaLR 0 364 4 5298 164 16 24 chr4 18158279 18159292 -166129370 + L1MA7 LINE L1 5481 6493 -2 22 35 0 0 chr4 18159293 18159322 -166129340 + AT_rich Low_complexity Low_complexity 1 29 0 1672 26 11 11 chr4 18159494 18159685 -166128977 - L1PA7 LINE L1 0 6154 5964 191 305 66 71 chr4 18160023 18160220 -166128442 - L3 LINE CR1 -263 1314 1119 235 386 76 0 chr4 18160673 18160805 -166127857 + MER117 DNA MER1_type 5 146 -51 264 331 42 49 chr4 18161102 18161244 -166127418 - L2 LINE L2 -1 3312 3172 473 264 72 30 chr4 18161942 18162169 -166126493 - MIR SINE MIR -15 247 14 877 291 45 45 chr4 18162506 18162904 -166125758 + MLT1L LTR MaLR 7 404 -211 25 0 0 0 chr4 18163149 18163174 -166125488 + AT_rich Low_complexity Low_complexity 1 25 0 1132 226 9 18 chr4 18163341 18163567 -166125095 + MER58A DNA MER1_type 1 224 0 2038 202 41 137 chr4 18163591 18163766 -166124896 + MER89 LTR ERV1 6 196 -363 610 99 0 12 chr4 18163766 18163847 -166124815 + MADE1 DNA Mariner 1 80 0 2038 202 41 137 chr4 18163847 18164284 -166124378 + MER89 LTR ERV1 196 559 0 260 342 13 0 chr4 18164284 18164360 -166124302 + MIR SINE MIR 30 106 -102 270 333 51 8 chr4 18165196 18165313 -166123349 + MIR SINE MIR 16 137 -71 618 148 22 0 chr4 18165336 18165452 -166123210 + L1PB4 LINE L1 5654 5777 -378 320 244 17 28 chr4 18165464 18165644 -166123018 + (TATG)n Simple_repeat Simple_repeat 1 178 0 290 266 0 25 chr4 18165645 18165724 -166122938 + (TATATG)n Simple_repeat Simple_repeat 6 82 0 201 268 18 0 chr4 18165903 18165959 -166122703 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 2338 148 11 3 chr4 18165960 18166317 -166122345 + L1PB4 LINE L1 5789 6148 -8 581 252 40 122 chr4 18166772 18167050 -166121612 + MIR SINE MIR 8 262 0 269 308 137 0 chr4 18167052 18167169 -166121493 - MIR SINE MIR -29 233 101 1299 200 51 34 chr4 18168628 18169138 -166119524 - MLT1C LTR MaLR 0 467 1 5098 212 15 4 chr4 18169562 18170820 -166117842 - L1PA15-16 LINE L1 -3569 3280 2008 334 310 20 0 chr4 18170860 18170960 -166117702 + MIR SINE MIR 57 158 -104 1960 176 17 62 chr4 18171017 18171421 -166117241 + MLT1B LTR MaLR 3 388 -2 1178 223 44 16 chr4 18171476 18171817 -166116845 + MER33 DNA MER1_type 1 324 0 376 274 173 44 chr4 18171928 18172127 -166116535 + MIR SINE MIR 8 241 -21 1979 184 25 6 chr4 18172127 18172485 -166116177 + MLT1A1 LTR MaLR 1 365 0 376 274 173 44 chr4 18172485 18172511 -166116151 + MIR SINE MIR 241 262 0 2401 73 0 7 chr4 18172580 18172883 -166115779 + AluY SINE Alu 1 301 -10 186 366 42 21 chr4 18173044 18173186 -166115476 + L2 LINE L2 2917 3061 -211 407 346 15 15 chr4 18173936 18174072 -166114590 + MIR SINE MIR 10 145 -117 21 36 0 0 chr4 18174074 18174102 -166114560 + AT_rich Low_complexity Low_complexity 1 28 0 1876 199 16 40 chr4 18174194 18174566 -166114096 + MLT1A1 LTR MaLR 1 363 -2 4101 198 36 31 chr4 18174566 18175406 -166113256 + MLT1A1-int LTR MaLR 2 845 -890 3260 111 10 49 chr4 18175474 18175987 -166112675 - LTR3b LTR ERVK -7 493 1 2216 222 90 39 chr4 18175993 18176634 -166112028 + MLT1A1-int LTR MaLR 880 1727 -8 2293 176 11 8 chr4 18176641 18177005 -166111657 + MLT1A1 LTR MaLR 1 365 0 5994 63 1 9 chr4 18177096 18177876 -166110786 + L1PA3 LINE L1 3 776 -5370 21902 27 1 2 chr4 18177883 18181127 -166107535 + L1PA3 LINE L1 2919 6165 0 184 359 14 35 chr4 18181200 18181345 -166107317 + MIR SINE MIR 76 217 -45 193 244 103 0 chr4 18181780 18181858 -166106804 + L2 LINE L2 3001 3086 -227 338 156 78 11 chr4 18181913 18182003 -166106659 + MIR SINE MIR 166 261 -1 193 220 266 18 chr4 18182108 18182217 -166106445 + L2 LINE L2 3137 3272 0 183 265 0 0 chr4 18182440 18182489 -166106173 - L2 LINE L2 -2 3311 3263 227 265 0 0 chr4 18183174 18183223 -166105439 + (CA)n Simple_repeat Simple_repeat 2 50 0 438 239 110 0 chr4 18183247 18183356 -166105306 + MIR3 SINE MIR 82 202 -6 1692 179 0 10 chr4 18183471 18183762 -166104900 - AluJb SINE Alu -24 288 1 871 276 93 21 chr4 18183764 18183855 -166104807 + MER113 DNA MER1_type? 11 94 -427 2219 68 0 0 chr4 18183855 18184120 -166104542 - AluY SINE Alu -17 294 30 871 276 93 21 chr4 18184120 18184460 -166104202 + MER113 DNA MER1_type? 94 473 -48 411 307 0 0 chr4 18185011 18185112 -166103550 + MIR SINE MIR 43 143 -119 189 74 0 0 chr4 18185270 18185297 -166103365 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 299 200 85 62 chr4 18186027 18186157 -166102505 - L1MC4a LINE L1 -1829 5979 5847 569 262 92 71 chr4 18187048 18187342 -166101320 + LTR16C LTR ERVL 85 384 -107 330 238 86 29 chr4 18187371 18187476 -166101186 - LTR41 LTR ERVL -6 767 657 272 262 47 54 chr4 18188043 18188192 -166100470 - LTR41 LTR ERVL -605 168 21 21 36 0 0 chr4 18188193 18188221 -166100441 + AT_rich Low_complexity Low_complexity 1 28 0 370 194 28 0 chr4 18188221 18188293 -166100369 + LTR16C LTR ERVL 418 491 0 3276 122 28 35 chr4 18188345 18188919 -166099743 - MER4B LTR ERV1 -36 574 5 351 314 6 57 chr4 18188937 18189112 -166099550 + MIR SINE MIR 81 246 -16 613 285 149 9 chr4 18189438 18189659 -166099003 - MIR SINE MIR -1 261 10 222 323 48 48 chr4 18189685 18189809 -166098853 + MIR3 SINE MIR 36 159 -49 1474 261 106 17 chr4 18189939 18190457 -166098205 + MER20B DNA MER1_type 198 761 -22 389 306 9 0 chr4 18190563 18190674 -166097988 - L2 LINE L2 0 3313 3202 1807 202 33 22 chr4 18190699 18191060 -166097602 - MLT1A1 LTR MaLR 0 365 1 2232 208 27 37 chr4 18191067 18191576 -166097086 + L1ME3 LINE L1 5589 6094 -68 2069 145 0 3 chr4 18191576 18191873 -166096789 + AluSq SINE Alu 1 296 -17 2232 208 27 37 chr4 18191873 18191910 -166096752 + L1ME3 LINE L1 6094 6130 -32 288 276 31 71 chr4 18191998 18192125 -166096537 + MIR SINE MIR 28 149 -113 2516 171 16 57 chr4 18192125 18192432 -166096230 - MER70A LTR ERVL 0 472 191 1889 68 12 28 chr4 18192432 18192682 -166095980 - L1PA7 LINE L1 -2 6152 5907 2516 171 16 57 chr4 18192682 18192866 -166095796 - MER70A LTR ERVL -281 191 1 561 249 94 22 chr4 18193034 18193215 -166095447 - MER117 DNA MER1_type 0 197 4 2372 71 0 7 chr4 18193385 18193681 -166094981 + AluY SINE Alu 9 302 -9 333 0 0 0 chr4 18194698 18194735 -166093927 + (CA)n Simple_repeat Simple_repeat 2 38 0 194 328 0 0 chr4 18195335 18195393 -166093269 - L3 LINE CR1 -4 1573 1516 290 247 0 0 chr4 18195403 18195484 -166093178 + MER113 DNA MER1_type? 43 123 -398 239 284 45 0 chr4 18195595 18195662 -166093000 + MER113 DNA MER1_type? 452 521 0 2109 128 3 3 chr4 18195867 18196165 -166092497 + AluSx SINE Alu 1 298 -14 225 299 17 86 chr4 18196173 18196290 -166092372 - MIR3 SINE MIR -49 159 51 356 313 133 26 chr4 18196986 18197181 -166091481 + L3 LINE CR1 1360 1575 -2 593 231 16 0 chr4 18197323 18197444 -166091218 - MER58A DNA MER1_type 0 162 40 1237 186 0 14 chr4 18197761 18197982 -166090680 + AluJb SINE Alu 85 302 -10 257 254 56 0 chr4 18199372 18199443 -166089219 + MIR SINE MIR 84 158 -104 527 303 23 17 chr4 18199888 18200063 -166088599 + MER5B DNA MER1_type 1 176 -2 183 186 0 0 chr4 18200075 18200118 -166088544 + GA-rich Low_complexity Low_complexity 2 44 0 253 368 9 9 chr4 18200120 18200226 -166088436 - MIR SINE MIR -120 142 37 216 122 0 0 chr4 18200652 18200693 -166087969 + (GA)n Simple_repeat Simple_repeat 2 42 0 2462 132 20 39 chr4 18200786 18201194 -166087468 + MER57A LTR ERV1 1 400 -3 353 225 50 42 chr4 18201370 18201490 -166087172 - MIR SINE MIR -95 167 47 590 174 66 0 chr4 18202206 18202327 -166086335 + MER63 DNA MER1_type 12 766 -296 225 242 194 0 chr4 18202324 18202386 -166086276 + MER63 DNA MER1_type 984 1057 -3 * 2184 103 0 3 chr4 18203386 18203676 -166084986 + AluSg SINE Alu 6 294 -16 214 175 0 0 chr4 18203793 18203833 -166084829 + MIR SINE MIR 152 191 -71 1041 293 119 20 chr4 18203911 18204440 -166084222 + L2 LINE L2 2717 3308 -5 408 297 63 11 chr4 18204448 18204623 -166084039 - MIR SINE MIR -70 192 9 495 78 0 26 chr4 18204948 18205025 -166083637 - MADE1 DNA Mariner 0 80 6 23 33 0 0 chr4 18205643 18205673 -166082989 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr4 18207033 18207059 -166081603 + AT_rich Low_complexity Low_complexity 1 26 0 192 40 0 0 chr4 18207226 18207251 -166081411 + (CA)n Simple_repeat Simple_repeat 2 26 0 348 215 46 0 chr4 18207588 18207653 -166081009 - MER58A DNA MER1_type -31 76 9 235 320 109 34 chr4 18207658 18207833 -166080829 - MER5A DNA MER1_type 0 189 2 1229 197 105 4 chr4 18208354 18208593 -166080069 + Tigger7 DNA MER2_type 3 265 -2222 2145 132 3 0 chr4 18208631 18208935 -166079727 - AluSx SINE Alu -7 305 1 403 169 0 0 chr4 18208953 18209018 -166079644 + Tigger7 DNA MER2_type 2426 2490 -1 296 267 69 10 chr4 18209591 18209692 -166078970 + Charlie2a DNA MER1_type 445 551 -2311 1921 142 0 26 chr4 18209866 18210169 -166078493 + AluSx SINE Alu 1 295 -17 2370 77 0 7 chr4 18210585 18210884 -166077778 + AluY SINE Alu 1 297 -14 3595 216 98 68 chr4 18211173 18211940 -166076722 + Charlie2a DNA MER1_type 572 1315 -1547 2518 62 0 7 chr4 18211940 18212249 -166076413 - AluY SINE Alu -4 307 1 3595 216 98 68 chr4 18212249 18212320 -166076342 + Charlie2a DNA MER1_type 1315 1382 -1480 1083 214 153 0 chr4 18212320 18212582 -166076080 - AluJo SINE Alu 0 302 1 3595 216 98 68 chr4 18212582 18212802 -166075860 + Charlie2a DNA MER1_type 1382 1594 -1268 1761 155 10 7 chr4 18212802 18213099 -166075563 - AluJo SINE Alu -12 300 3 3595 216 98 68 chr4 18213099 18213785 -166074877 + Charlie2a DNA MER1_type 1594 2370 -492 720 267 11 6 chr4 18213791 18213971 -166074691 + MIR SINE MIR 72 252 -10 322 263 46 65 chr4 18214695 18214916 -166073746 + L1M2 LINE L1 901 1142 -5707 181 293 12 85 chr4 18215176 18215258 -166073404 - L2 LINE L2 -25 3247 3172 268 275 0 25 chr4 18215823 18215903 -166072759 - L2 LINE L2 -1220 2094 2017 2105 78 92 0 chr4 18216003 18216285 -166072377 - AluSc SINE Alu -1 308 1 787 146 34 28 chr4 18217147 18217325 -166071337 + Charlie2 DNA MER1_type 2035 2213 -649 1693 141 0 8 chr4 18217670 18217926 -166070736 + AluSx SINE Alu 40 293 -19 1009 266 83 76 chr4 18219041 18219859 -166068803 - L2 LINE L2 0 3313 2428 228 173 0 19 chr4 18219886 18219938 -166068724 + L1MC4 LINE L1 6660 6710 -1332 1958 163 7 0 chr4 18220187 18220488 -166068174 + AluSx SINE Alu 1 303 -9 1152 180 18 31 chr4 18221251 18221473 -166067189 - MER20 DNA MER1_type 0 219 1 182 261 0 76 chr4 18221871 18221963 -166066699 - L3 LINE CR1 -662 915 831 180 246 18 53 chr4 18222731 18222788 -166065874 - MIR SINE MIR -90 172 118 1507 176 67 7 chr4 18223027 18223311 -166065351 - AluJo SINE Alu -11 301 1 228 242 21 63 chr4 18223739 18223834 -166064828 + L3b LINE CR1 1103 1193 -390 234 342 0 0 chr4 18224318 18224397 -166064265 + L3b LINE CR1 1384 1462 -121 448 163 0 0 chr4 18224575 18224655 -166064007 - MER116 DNA Mariner 0 80 1 2341 93 3 10 chr4 18225076 18225387 -166063275 - AluSc SINE Alu 0 309 1 302 288 131 74 chr4 18225913 18226264 -166062398 + L2 LINE L2 2943 3313 0 200 149 21 64 chr4 18227970 18228017 -166060645 + GA-rich Low_complexity Low_complexity 4 48 0 23 86 0 0 chr4 18228466 18228524 -166060138 + AT_rich Low_complexity Low_complexity 1 58 0 258 357 23 23 chr4 18228920 18229050 -166059612 + MIR SINE MIR 1 133 -75 23 0 0 0 chr4 18229070 18229093 -166059569 + AT_rich Low_complexity Low_complexity 1 23 0 1740 251 65 17 chr4 18229181 18229713 -166058949 - MER77 LTR ERV1 -4 601 58 203 260 0 0 chr4 18229748 18229798 -166058864 - L2 LINE L2 -9 3263 3214 * 575 255 210 0 chr4 18229764 18229964 -166058698 - MIR SINE MIR -19 243 2 954 259 43 31 chr4 18230670 18231021 -166057641 + MER93b LTR ERV1 19 373 0 1727 161 79 0 chr4 18231611 18231941 -166056721 - MER46B DNA MER2_type -5 231 1 230 281 0 0 chr4 18232752 18232809 -166055853 + (TA)n Simple_repeat Simple_repeat 1 57 0 2146 126 7 0 chr4 18234754 18235064 -166053598 + AluSq SINE Alu 1 312 -1 250 302 0 9 chr4 18235682 18235798 -166052864 - L1ME LINE L1 -299 5822 5708 214 293 40 71 chr4 18243758 18243857 -166044805 - MIR SINE MIR -80 182 87 212 209 0 0 chr4 18243885 18243928 -166044734 + MIR SINE MIR 110 152 -110 209 288 213 0 chr4 18244373 18244453 -166044209 - MIR3 SINE MIR -1 207 111 795 335 103 22 chr4 18245416 18245825 -166042837 + L2 LINE L2 2403 2844 -470 298 327 50 20 chr4 18245931 18246130 -166042532 - L2 LINE L2 -223 3049 2845 1412 180 55 59 chr4 18247022 18247416 -166041246 - Charlie1 DNA MER1_type 0 2761 2368 2109 107 0 4 chr4 18247416 18247728 -166040934 - AluSc SINE Alu 0 309 10 1412 180 55 59 chr4 18247728 18247788 -166040874 - Charlie1 DNA MER1_type -393 2368 2309 254 242 250 25 chr4 18247793 18247913 -166040749 - Charlie1 DNA MER1_type -2601 160 14 23 54 0 0 chr4 18248868 18248905 -166039757 + AT_rich Low_complexity Low_complexity 1 37 0 1222 183 26 0 chr4 18249138 18249368 -166039294 - MER46A DNA MER2_type 0 236 1 715 208 8 0 chr4 18251149 18251274 -166037388 + FLAM_A SINE Alu 1 126 -7 23 54 0 0 chr4 18251274 18251311 -166037351 + AT_rich Low_complexity Low_complexity 1 37 0 369 355 49 6 chr4 18252000 18252183 -166036479 - MIR SINE MIR -1 261 71 390 284 96 46 chr4 18252907 18253146 -166035516 - L1ME LINE L1 -381 5789 5539 229 363 38 6 chr4 18253295 18253455 -166035207 + MIR SINE MIR 84 248 -14 24 67 0 0 chr4 18253509 18253554 -166035108 + AT_rich Low_complexity Low_complexity 1 45 0 300 239 63 88 chr4 18253871 18254030 -166034632 - MER104 DNA Tc2 -25 155 1 2280 84 7 10 chr4 18254139 18254448 -166034214 - AluY SINE Alu -3 308 1 21 0 0 0 chr4 18254459 18254480 -166034182 + AT_rich Low_complexity Low_complexity 1 21 0 798 236 50 0 chr4 18255051 18255250 -166033412 + MER3 DNA MER1_type 1 209 0 24 0 0 0 chr4 18255327 18255351 -166033311 + AT_rich Low_complexity Low_complexity 1 24 0 354 326 51 2 chr4 18255358 18255557 -166033105 - MIR SINE MIR -13 249 4 2630 107 3 3 chr4 18256345 18256709 -166031953 - THE1B LTR MaLR 0 364 1 25 0 0 0 chr4 18256970 18256995 -166031667 + AT_rich Low_complexity Low_complexity 1 25 0 25 51 0 0 chr4 18257314 18257353 -166031309 + AT_rich Low_complexity Low_complexity 1 39 0 378 0 0 0 chr4 18257868 18257910 -166030752 + (CA)n Simple_repeat Simple_repeat 2 43 0 210 282 0 0 chr4 18257910 18257988 -166030674 + CT-rich Low_complexity Low_complexity 1 78 0 1101 238 22 118 chr4 18258165 18258811 -166029851 + Charlie7 DNA MER1_type 40 623 -1989 434 289 16 58 chr4 18261900 18262090 -166026572 + MIR SINE MIR 37 218 -44 333 295 22 14 chr4 18262648 18262787 -166025875 + L1ME4a LINE L1 5977 6116 -5 202 305 181 9 chr4 18263498 18263603 -166025059 + MIR SINE MIR 32 154 -108 878 198 0 0 chr4 18263636 18263803 -166024859 + FRAM SINE Alu 1 163 -13 1215 152 71 9 chr4 18263818 18264028 -166024634 - MER46A DNA MER2_type -13 223 1 2152 104 0 7 chr4 18264146 18264445 -166024217 + AluSx SINE Alu 1 297 -15 249 295 279 8 chr4 18264449 18264571 -166024091 - MIR3 SINE MIR -49 159 5 23 0 0 0 chr4 18265045 18265068 -166023594 + AT_rich Low_complexity Low_complexity 1 23 0 249 241 0 0 chr4 18265409 18265467 -166023195 + GA-rich Low_complexity Low_complexity 1 58 0 235 167 200 0 chr4 18265944 18266004 -166022658 + MER116 DNA Mariner 2 73 -7 285 214 45 136 chr4 18266056 18266152 -166022510 - MER103 DNA DNA 0 166 88 2233 95 3 0 chr4 18266152 18266456 -166022206 + AluSc SINE Alu 1 305 -4 285 214 45 136 chr4 18266456 18266513 -166022149 - MER103 DNA DNA -78 88 27 1885 127 10 14 chr4 18266668 18266959 -166021703 + AluJo SINE Alu 1 290 -22 27 0 0 0 chr4 18266959 18266986 -166021676 + AT_rich Low_complexity Low_complexity 1 27 0 2358 77 0 10 chr4 18267133 18267444 -166021218 + AluSg SINE Alu 1 308 -2 414 273 245 18 chr4 18268020 18268298 -166020364 - L3 LINE CR1 -7 1570 1230 818 137 24 0 chr4 18268376 18268500 -166020162 + FLAM_A SINE Alu 1 127 -6 26 0 0 0 chr4 18268500 18268526 -166020136 + AT_rich Low_complexity Low_complexity 1 26 0 1877 159 0 0 chr4 18268528 18268830 -166019832 + AluSx SINE Alu 1 302 -10 429 138 0 0 chr4 18268858 18268938 -166019724 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 393 316 194 19 chr4 18268938 18269258 -166019404 - L3 LINE CR1 -491 1086 711 218 296 204 9 chr4 18270451 18270559 -166018103 - MIR SINE MIR -28 234 106 429 259 184 7 chr4 18270572 18270719 -166017943 - MER5A DNA MER1_type -8 181 9 415 289 44 15 chr4 18271068 18271203 -166017459 - L2 LINE L2 -1 3271 3133 354 268 84 17 chr4 18271208 18271387 -166017275 + MER112 DNA MER1_type 5 195 -65 373 285 32 24 chr4 18271899 18272022 -166016640 - MIR SINE MIR -62 146 23 26 30 0 0 chr4 18272807 18272840 -166015822 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr4 18273580 18273603 -166015059 + AT_rich Low_complexity Low_complexity 1 23 0 3252 121 23 0 chr4 18273904 18274384 -166014278 + L1PA16 LINE L1 5415 5905 -261 437 243 48 42 chr4 18274720 18274874 -166013788 + MER20B DNA MER1_type 41 198 -21 193 338 28 14 chr4 18275300 18275371 -166013291 - MIR SINE MIR -116 92 21 431 228 53 9 chr4 18276174 18276288 -166012374 - MER103 DNA DNA -45 121 3 232 344 65 11 chr4 18276413 18276506 -166012156 - MIR SINE MIR -66 142 45 1892 132 0 0 chr4 18276625 18276928 -166011734 + AluSx SINE Alu 4 306 0 333 251 104 18 chr4 18276944 18277107 -166011555 - L1ME4a LINE L1 -6 6115 5939 2093 254 92 24 chr4 18277114 18277787 -166010875 - HsTC2c DNA Tc2 -7 722 4 1033 68 0 8 chr4 18277861 18277993 -166010669 + AluY SINE Alu 1 131 -180 429 212 65 12 chr4 18278126 18278296 -166010366 - L1ME4a LINE L1 -206 5964 5786 26 0 0 0 chr4 18278296 18278322 -166010340 + AT_rich Low_complexity Low_complexity 1 26 0 928 260 102 19 chr4 18278642 18279050 -166009612 - L1ME4a LINE L1 -531 5631 5153 345 24 0 0 chr4 18279050 18279092 -166009570 + (CA)n Simple_repeat Simple_repeat 2 43 0 928 260 102 19 chr4 18279092 18279252 -166009410 - L1ME4a LINE L1 -1009 5153 5008 541 257 140 27 chr4 18279363 18279585 -166009077 - HAL1 LINE L1 -588 1919 1673 2199 163 48 11 chr4 18280241 18280615 -166008047 + MSTD LTR MaLR 9 396 0 1236 252 163 3 chr4 18280643 18281159 -166007503 - LTR50 LTR ERVL -111 684 1 2263 93 3 0 chr4 18281238 18281538 -166007124 + AluSc SINE Alu 1 301 -8 2150 124 35 32 chr4 18281844 18282216 -166006446 + THE1C LTR MaLR 1 373 -2 215 323 141 0 chr4 18283134 18283233 -166005429 + MIR SINE MIR 93 205 -57 * 402 219 14 0 chr4 18283222 18283295 -166005367 - L2 LINE L2 -3 3310 3237 969 230 14 9 chr4 18283307 18283529 -166005133 - L1ME3A LINE L1 -297 5873 5651 572 256 45 6 chr4 18283531 18283707 -166004955 - MER113 DNA MER1_type? -117 404 222 1440 178 47 7 chr4 18283717 18283992 -166004670 - AluJo SINE Alu -26 286 1 1406 222 10 3 chr4 18284013 18284310 -166004352 - AluJo SINE Alu -13 299 1 340 177 0 0 chr4 18284441 18284503 -166004159 + L1ME LINE L1 906 967 -5103 1731 318 61 31 chr4 18284538 18285453 -166003209 + L2 LINE L2 1562 2504 -810 2402 155 13 62 chr4 18285471 18285603 -166003059 + L1MB2 LINE L1 5201 5338 -833 6547 35 4 0 chr4 18285603 18286361 -166002301 + L1PA5 LINE L1 5383 6154 0 2402 155 13 62 chr4 18286361 18286774 -166001888 + L1MB2 LINE L1 5338 5725 -446 471 182 0 0 chr4 18286774 18286851 -166001811 - MLT1F LTR MaLR -465 77 1 384 266 0 0 chr4 18286856 18286935 -166001727 - MIR SINE MIR -114 148 70 404 214 10 20 chr4 18287363 18287461 -166001201 - L1MA8 LINE L1 -290 6001 5905 2399 158 4 48 chr4 18287472 18287947 -166000715 + L1MB2 LINE L1 5718 6171 0 3755 154 42 1 chr4 18287947 18288106 -166000556 + L1MB3 LINE L1 5468 5619 -564 423 0 0 0 chr4 18288106 18288153 -166000509 + (CA)n Simple_repeat Simple_repeat 2 48 0 3755 154 42 1 chr4 18288153 18288651 -166000011 + L1MB3 LINE L1 5619 6167 -16 797 334 86 40 chr4 18288682 18289050 -165999612 + L2 LINE L2 2529 2879 -434 1130 157 107 147 chr4 18289050 18289425 -165999237 - MLT1A1 LTR MaLR -2 363 4 797 334 86 40 chr4 18289425 18289581 -165999081 + L2 LINE L2 2879 3026 -287 7389 164 7 20 chr4 18289581 18291715 -165996947 - L1PA13 LINE L1 0 6163 4022 797 334 86 40 chr4 18291715 18291898 -165996764 + L2 LINE L2 3026 3286 -27 1916 102 26 0 chr4 18292164 18292430 -165996232 + AluSx SINE Alu 3 275 -37 2036 113 0 0 chr4 18292523 18292849 -165995813 + AluSq SINE Alu 1 326 0 229 268 134 0 chr4 18293303 18293385 -165995277 - MIR3 SINE MIR -37 171 79 289 211 133 70 chr4 18293798 18293926 -165994736 + MIR SINE MIR 117 252 -10 21 36 0 0 chr4 18293942 18293970 -165994692 + AT_rich Low_complexity Low_complexity 1 28 0 191 286 104 13 chr4 18294276 18294353 -165994309 - MIR3 SINE MIR -39 169 86 214 200 0 27 chr4 18294731 18294806 -165993856 + GA-rich Low_complexity Low_complexity 1 73 0 23 0 0 0 chr4 18294908 18294931 -165993731 + GC_rich Low_complexity Low_complexity 1 23 0 203 147 0 0 chr4 18297404 18297438 -165991224 + (CCG)n Simple_repeat Simple_repeat 1 34 0 25 65 0 0 chr4 18298005 18298051 -165990611 + GC_rich Low_complexity Low_complexity 1 46 0 21 71 0 0 chr4 18298247 18298289 -165990373 + GC_rich Low_complexity Low_complexity 1 42 0 223 239 14 0 chr4 18299889 18299960 -165988702 + (CGG)n Simple_repeat Simple_repeat 3 74 0 583 226 54 11 chr4 18300404 18300590 -165988072 + MER91A DNA MER1_type 3 196 0 204 118 40 40 chr4 18303381 18303457 -165985205 + CT-rich Low_complexity Low_complexity 2 77 0 217 301 133 0 chr4 18303644 18303727 -165984935 - MIR3 SINE MIR -16 192 99 198 167 0 0 chr4 18303854 18303890 -165984772 + (TG)n Simple_repeat Simple_repeat 1 36 0 681 64 45 0 chr4 18303890 18304000 -165984662 + GA-rich Low_complexity Low_complexity 4 118 0 293 216 0 0 chr4 18305214 18305265 -165983397 - MIR SINE MIR -65 143 93 240 262 49 0 chr4 18306692 18306753 -165981909 + MIR SINE MIR 63 126 -82 216 0 0 0 chr4 18307167 18307191 -165981471 + (A)n Simple_repeat Simple_repeat 1 24 0 254 301 0 0 chr4 18308816 18308899 -165979763 + G-rich Low_complexity Low_complexity 1 83 0 181 258 212 0 chr4 18309039 18309105 -165979557 + L2 LINE L2 3188 3267 -5 2091 98 0 42 chr4 18309152 18309467 -165979195 + AluSc SINE Alu 4 296 -13 25 0 0 0 chr4 18310161 18310186 -165978476 + AT_rich Low_complexity Low_complexity 1 25 0 192 231 341 0 chr4 18310509 18310600 -165978062 - L2 LINE L2 -8 3264 3143 215 304 234 5 chr4 18311160 18311344 -165977318 - MIR SINE MIR -5 257 32 201 191 0 0 chr4 18311400 18311442 -165977220 - MIR SINE MIR -68 140 99 287 324 118 15 chr4 18311614 18311818 -165976844 + MIR SINE MIR 26 250 -12 396 0 0 0 chr4 18312277 18312321 -165976341 + (CA)n Simple_repeat Simple_repeat 2 45 0 279 312 45 26 chr4 18312435 18312589 -165976073 - MIR SINE MIR -77 185 29 260 246 79 61 chr4 18313194 18313308 -165975354 - MIR3 SINE MIR -22 186 71 181 0 69 0 chr4 18313433 18313462 -165975200 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 328 164 0 0 chr4 18313510 18313565 -165975097 - MIR SINE MIR -133 129 75 722 245 113 20 chr4 18315409 18315613 -165973049 + MIR SINE MIR 23 245 -17 536 276 173 11 chr4 18315801 18315986 -165972676 + MIR SINE MIR 14 228 -34 199 302 83 25 chr4 18316166 18316301 -165972361 + MIR SINE MIR 9 153 -104 328 373 39 7 chr4 18317583 18317736 -165970926 - MIR SINE MIR -90 172 15 217 296 49 0 chr4 18317740 18317821 -165970841 + L2 LINE L2 3223 3307 -6 214 250 88 12 chr4 18319073 18319153 -165969509 - MER5A DNA MER1_type -89 100 15 22 56 0 0 chr4 18321358 18321394 -165967268 + AT_rich Low_complexity Low_complexity 1 36 0 537 332 74 0 chr4 18322066 18322256 -165966406 - MIR SINE MIR -1 261 58 23 0 0 0 chr4 18324712 18324735 -165963927 + AT_rich Low_complexity Low_complexity 1 23 0 213 39 0 0 chr4 18326147 18326173 -165962489 + (GA)n Simple_repeat Simple_repeat 1 26 0 26 74 0 0 chr4 18326186 18326240 -165962422 + AT_rich Low_complexity Low_complexity 1 54 0 279 56 0 111 chr4 18326611 18326665 -165961997 - FLAM_A SINE Alu 0 133 89 24 32 0 0 chr4 18327257 18327288 -165961374 + AT_rich Low_complexity Low_complexity 1 31 0 1925 162 3 3 chr4 18327535 18327837 -165960825 - AluJb SINE Alu -10 302 1 373 323 55 24 chr4 18328514 18328641 -165960021 - MIR SINE MIR -62 146 16 654 326 86 40 chr4 18328665 18329070 -165959592 + LTR16A LTR ERVL 16 439 -18 1957 181 105 37 chr4 18329070 18329584 -165959078 - MER34C LTR ERV1 0 585 37 1801 137 60 0 chr4 18330211 18330472 -165958190 + AluSg1 SINE Alu 1 282 -27 207 0 0 0 chr4 18330472 18330495 -165958167 + (TC)n Simple_repeat Simple_repeat 1 23 0 1801 137 60 0 chr4 18330495 18330517 -165958145 + AluSg1 SINE Alu 282 301 -8 1791 163 35 3 chr4 18331001 18331289 -165957373 - AluJo SINE Alu -14 298 2 1633 216 77 48 chr4 18331815 18332269 -165956393 - MLT1C LTR MaLR 0 467 1 1174 100 44 96 chr4 18332335 18332564 -165956098 - AluJo SINE Alu -25 287 71 2551 185 22 28 chr4 18332565 18333062 -165955600 - MSTB-int LTR MaLR -849 802 309 2329 139 0 0 chr4 18333091 18333437 -165955225 - MSTB-int LTR MaLR -1282 369 24 902 135 6 39 chr4 18333437 18333459 -165955203 - MSTD LTR MaLR -245 151 130 2595 151 29 7 chr4 18333459 18333876 -165954786 - MSTB LTR MaLR 0 426 1 902 135 6 39 chr4 18333876 18334009 -165954653 - MSTD LTR MaLR -266 130 1 644 296 69 5 chr4 18334320 18334536 -165954126 + MIR SINE MIR 3 232 -30 270 254 0 0 chr4 18334622 18334677 -165953985 + MLT1E3 LTR MaLR 11 65 -589 1994 239 52 7 chr4 18334726 18335191 -165953471 + MLT1E3 LTR MaLR 139 624 0 656 298 64 33 chr4 18335268 18335934 -165952728 - L1ME LINE L1 -558 5591 4906 440 296 66 28 chr4 18336004 18336321 -165952341 - L1ME LINE L1 -1699 4430 4102 583 249 29 57 chr4 18336324 18336533 -165952129 - L1ME LINE L1 -2069 4060 3858 696 229 70 38 chr4 18336551 18336708 -165951954 - FAM SINE Alu -10 165 4 802 193 114 139 chr4 18336714 18337030 -165951632 - AluJo SINE Alu -4 308 1 225 306 93 0 chr4 18337225 18337333 -165951329 - L1ME LINE L1 -4678 1632 1515 587 170 94 0 chr4 18337497 18337603 -165951059 - AluJb SINE Alu -13 299 184 241 254 95 0 chr4 18337603 18337666 -165950996 - AluJ/FLAM SINE Alu -228 74 6 580 263 36 39 chr4 18337692 18337973 -165950689 - L1ME LINE L1 -4867 1252 973 261 0 0 0 chr4 18337974 18338003 -165950659 + (TG)n Simple_repeat Simple_repeat 2 30 0 1212 206 0 0 chr4 18338007 18338226 -165950436 - AluJo SINE Alu -10 302 84 229 289 66 68 chr4 18338226 18338637 -165950025 - L1ME LINE L1 -5167 952 543 478 222 144 22 chr4 18338902 18339082 -165949580 - L1M4 LINE L1 -1161 4985 4784 1087 170 0 0 chr4 18339235 18339400 -165949262 - FRAM SINE Alu -13 163 1 485 275 134 61 chr4 18339424 18339900 -165948762 - L1M4 LINE L1 -1722 4424 3914 2300 113 0 0 chr4 18340209 18340519 -165948143 - AluSx SINE Alu 0 312 3 895 217 291 16 chr4 18340691 18341065 -165947597 + MLT1D LTR MaLR 21 497 -8 189 214 0 0 chr4 18342341 18342383 -165946279 + (CA)n Simple_repeat Simple_repeat 2 43 0 724 263 67 32 chr4 18342611 18342953 -165945709 - L1MEd LINE L1 -4862 2085 1732 336 313 119 8 chr4 18343115 18343256 -165945406 - MIR SINE MIR -66 142 35 1036 139 14 43 chr4 18343780 18343818 -165944844 - MLT2C1 LTR ERVL 0 397 359 318 26 0 0 chr4 18343818 18343857 -165944805 + (TG)n Simple_repeat Simple_repeat 2 40 0 1036 139 14 43 chr4 18343857 18344027 -165944635 - MLT2C1 LTR ERVL -38 359 195 409 271 72 54 chr4 18344378 18344544 -165944118 - MIR SINE MIR -48 214 46 25 31 0 0 chr4 18346046 18346078 -165942584 + AT_rich Low_complexity Low_complexity 1 32 0 2322 253 118 20 chr4 18346083 18346249 -165942413 - L1ME3A LINE L1 -28 6142 5994 258 32 0 0 chr4 18346249 18346280 -165942382 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2322 253 118 20 chr4 18346280 18347254 -165941408 - L1ME3A LINE L1 -176 5994 4899 2079 121 4 0 chr4 18347264 18347568 -165941094 + AluSg SINE Alu 2 306 0 245 132 93 0 chr4 18347784 18347854 -165940808 - L1M4b LINE L1 -5175 1782 1607 2226 129 102 58 chr4 18349152 18349562 -165939100 + MSTC LTR MaLR 1 428 0 827 245 73 77 chr4 18349690 18350043 -165938619 - L1ME3 LINE L1 -211 5951 5598 2189 108 0 29 chr4 18350043 18350357 -165938305 - AluSx SINE Alu -7 305 1 827 245 73 77 chr4 18350357 18350396 -165938266 - L1ME3 LINE L1 -564 5598 5560 2159 105 3 6 chr4 18350396 18350709 -165937953 - AluSx SINE Alu 0 312 1 827 245 73 77 chr4 18350709 18350780 -165937882 - L1ME3 LINE L1 -602 5560 5489 661 233 153 120 chr4 18350854 18351514 -165937148 + LTR50 LTR ERVL 98 779 -16 883 276 131 20 chr4 18351521 18352450 -165936212 - L1P5 LINE L1 -663 5491 4456 297 135 0 0 chr4 18352692 18352744 -165935918 + (TA)n Simple_repeat Simple_repeat 1 52 0 2238 98 7 7 chr4 18352744 18353039 -165935623 - AluSc SINE Alu -14 295 1 1300 248 40 6 chr4 18353355 18353702 -165934960 + L1ME3 LINE L1 5714 6072 -90 1122 193 21 13 chr4 18354212 18354655 -165934007 - MLT1D LTR MaLR 0 505 5 464 232 0 99 chr4 18354660 18354802 -165933860 + L2 LINE L2 3185 3312 -1 1755 171 0 35 chr4 18354803 18355118 -165933544 - AluJb SINE Alu -7 305 2 380 413 40 0 chr4 18355153 18355378 -165933284 + L3 LINE CR1 1271 1504 -73 225 217 0 43 chr4 18355735 18355781 -165932881 - MARNA DNA Mariner -69 517 474 204 243 99 42 chr4 18356413 18356493 -165932169 - MIR SINE MIR -55 153 69 324 291 111 0 chr4 18356554 18356671 -165931991 - MIR SINE MIR -16 246 117 701 176 37 7 chr4 18357013 18357149 -165931513 - Charlie1 DNA MER1_type 0 2761 2622 586 243 184 10 chr4 18357132 18357338 -165931324 - Charlie1 DNA MER1_type -2519 242 1 * 383 236 107 74 chr4 18358677 18358893 -165929769 + MIR SINE MIR 20 242 -20 23 86 0 0 chr4 18362476 18362534 -165926128 + AT_rich Low_complexity Low_complexity 1 58 0 23 0 0 0 chr4 18363274 18363297 -165925365 + AT_rich Low_complexity Low_complexity 1 23 0 26 50 0 0 chr4 18364763 18364803 -165923859 + AT_rich Low_complexity Low_complexity 1 40 0 21 57 0 0 chr4 18368678 18368713 -165919949 + AT_rich Low_complexity Low_complexity 1 35 0 186 43 0 0 chr4 18369502 18369525 -165919137 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 21 36 0 0 chr4 18369819 18369847 -165918815 + AT_rich Low_complexity Low_complexity 1 28 0 49 43 0 0 chr4 18369920 18369990 -165918672 + AT_rich Low_complexity Low_complexity 1 70 0 807 225 12 0 chr4 18370040 18370200 -165918462 + FRAM SINE Alu 1 162 -4 31141 99 10 11 chr4 18370303 18374847 -165913815 - L1P LINE L1 -1597 4549 11 515 263 117 9 chr4 18374863 18375076 -165913586 - L1ME2 LINE L1 -51 6113 5878 882 187 50 124 chr4 18375122 18375381 -165913281 - pTR5 LTR ERV1 -133 581 172 256 232 18 0 chr4 18375513 18375569 -165913093 - L1MB5 LINE L1 -46 6128 6072 884 200 0 0 chr4 18375994 18376154 -165912508 + FRAM SINE Alu 4 163 -3 1387 203 35 18 chr4 18377669 18377955 -165910707 + AluJo SINE Alu 3 293 -19 3375 252 81 18 chr4 18378644 18380305 -165908357 - L1MCa LINE L1 -2710 4231 2393 4697 188 49 7 chr4 18380335 18381867 -165906795 - L1MA7 LINE L1 0 6291 4691 315 0 0 0 chr4 18381867 18381902 -165906760 + (TG)n Simple_repeat Simple_repeat 2 36 0 4697 188 49 7 chr4 18381902 18381938 -165906724 - L1MA7 LINE L1 -1600 4691 4658 3672 230 82 26 chr4 18381940 18383795 -165904867 - L1MCc LINE L1 -4617 2505 1 21 0 0 0 chr4 18383803 18383824 -165904838 + AT_rich Low_complexity Low_complexity 1 21 0 1202 229 0 0 chr4 18384063 18384281 -165904381 - MER58A DNA MER1_type 0 224 7 240 273 98 70 chr4 18384579 18384722 -165903940 - MIR SINE MIR -96 166 20 415 274 10 10 chr4 18384937 18385039 -165903623 - MIR3 SINE MIR -10 198 97 1229 234 97 6 chr4 18385089 18385431 -165903231 - MER63 DNA MER1_type 0 1061 689 445 240 197 16 chr4 18385646 18385829 -165902833 + MIR SINE MIR 47 262 0 690 282 162 38 chr4 18386103 18386529 -165902133 + L3b LINE CR1 1102 1580 -3 681 142 8 60 chr4 18387000 18387134 -165901528 + MLT1A2 LTR MaLR 1 127 -238 671 160 0 8 chr4 18387140 18387259 -165901403 + FLAM_C SINE Alu 1 118 -25 879 201 73 14 chr4 18387275 18387494 -165901168 + MLT1A2 LTR MaLR 135 366 -8 403 219 49 0 chr4 18388168 18388250 -165900412 - MER7A DNA MER2_type -1 336 251 2053 96 47 209 chr4 18388252 18388783 -165899879 - MLT2A2 LTR ERVL -8 445 1 1539 117 68 42 chr4 18388783 18389046 -165899616 - MER7A DNA MER2_type -78 268 1 503 316 91 21 chr4 18389062 18389249 -165899413 + L3b LINE CR1 1286 1485 -98 192 77 0 0 chr4 18389928 18389954 -165898708 + (T)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr4 18390601 18390622 -165898040 + AT_rich Low_complexity Low_complexity 1 21 0 553 346 21 16 chr4 18390921 18391164 -165897498 + MIR SINE MIR 19 262 0 184 308 99 44 chr4 18391376 18391467 -165897195 - L2 LINE L2 -3 3269 3174 10345 232 37 34 chr4 18391613 18395470 -165893192 + L1M2 LINE L1 180 4070 -2778 2724 160 9 65 chr4 18395506 18396403 -165892259 + L1M2 LINE L1 5408 6250 -743 452 367 157 14 chr4 18396407 18396951 -165891711 + L2 LINE L2 2601 3226 -87 29 60 0 0 chr4 18397465 18397515 -165891147 + AT_rich Low_complexity Low_complexity 1 50 0 198 0 0 0 chr4 18398605 18398627 -165890035 + (CTG)n Simple_repeat Simple_repeat 2 23 0 353 273 105 47 chr4 18399412 18399584 -165889078 + MIR3 SINE MIR 24 205 -3 190 170 0 85 chr4 18399818 18399865 -165888797 - MIR SINE MIR 0 262 220 22 0 0 0 chr4 18399916 18399938 -165888724 + AT_rich Low_complexity Low_complexity 1 22 0 1949 249 65 4 chr4 18400186 18400724 -165887938 - L2 LINE L2 -494 2820 2250 9316 163 37 40 chr4 18400725 18402692 -165885970 + L1P3 LINE L1 10 1996 -4465 313 244 217 9 chr4 18402692 18402807 -165885855 - L2 LINE L2 -1060 2254 2116 4295 126 55 57 chr4 18402810 18403213 -165885449 + L1MA9 LINE L1 5425 5827 -485 2537 58 0 0 chr4 18403213 18403521 -165885141 + AluY SINE Alu 1 308 -3 4295 126 55 57 chr4 18403521 18404007 -165884655 + L1MA9 LINE L1 5827 6312 0 2266 99 0 0 chr4 18404068 18404360 -165884302 + AluSc SINE Alu 1 292 -17 889 259 67 13 chr4 18404593 18404832 -165883830 + MIR SINE MIR 11 262 0 32 103 0 0 chr4 18404893 18405009 -165883653 + AT_rich Low_complexity Low_complexity 1 116 0 1213 194 30 11 chr4 18406601 18406869 -165881793 - MLT1B LTR MaLR -117 273 1 182 256 35 81 chr4 18406901 18406987 -165881675 - MIR3 SINE MIR -3 205 124 27 81 0 0 chr4 18407037 18407099 -165881563 + AT_rich Low_complexity Low_complexity 1 62 0 583 202 4 19 chr4 18407691 18407818 -165880844 + L1PA16 LINE L1 6039 6165 0 * 3984 180 50 53 chr4 18407816 18407907 -165880755 + L1MB7 LINE L1 4992 5082 -1102 1650 170 29 0 chr4 18407907 18408183 -165880479 + AluSx SINE Alu 15 298 -14 3984 180 50 53 chr4 18408183 18409267 -165879395 + L1MB7 LINE L1 5082 6165 -19 10210 192 29 17 chr4 18409455 18412493 -165876169 - L1PA16 LINE L1 -285 6584 3491 2310 110 3 0 chr4 18412493 18412803 -165875859 - AluSx SINE Alu -1 311 1 10210 192 29 17 chr4 18412803 18413224 -165875438 - L1PA16 LINE L1 -3378 3491 3077 5329 133 21 32 chr4 18413203 18414269 -165874393 - L1PA16 LINE L1 -1 6868 5808 * 5404 219 52 16 chr4 18414292 18415990 -165872672 - L1PA16 LINE L1 -3744 3105 1355 346 275 0 0 chr4 18415994 18416085 -165872577 - L1PA16 LINE L1 -5285 1564 1474 2913 199 27 87 chr4 18417341 18418274 -165870388 - L1MEc LINE L1 -1144 5500 4624 2336 93 0 7 chr4 18418294 18418596 -165870066 + AluSx SINE Alu 1 300 -12 1277 234 71 7 chr4 18418617 18419015 -165869647 - L1MEc LINE L1 -2215 4429 1345 1671 191 115 29 chr4 18419249 18419700 -165868962 + LTR2B LTR ERV1 1 490 0 636 318 89 35 chr4 18419709 18420284 -165868378 - L1MEc LINE L1 -5760 1065 460 282 385 55 0 chr4 18420818 18420927 -165867735 - L2 LINE L2 -4 3268 3154 1540 245 164 23 chr4 18422354 18422922 -165865740 - L2 LINE L2 -1278 2036 1389 1870 195 74 14 chr4 18422934 18423364 -165865298 + MLT1C LTR MaLR 4 459 -8 1153 178 29 25 chr4 18423810 18424051 -165864611 - MER58B DNA MER1_type 0 341 100 315 180 33 0 chr4 18424041 18424102 -165864560 - AluSq SINE Alu -4 299 237 * 1392 97 0 5 chr4 18424102 18424287 -165864375 - AluSq SINE Alu -129 184 1 352 211 100 11 chr4 18424291 18424381 -165864281 - MER58B DNA MER1_type -243 98 1 7125 47 4 0 chr4 18424623 18425925 -165862737 - L1PA6 LINE L1 0 6154 4854 1669 79 7 4 chr4 18426078 18426314 -165862348 - pTR5 LTR ERV1 -219 495 172 404 238 10 0 chr4 18426317 18426418 -165862244 - LTR30 LTR ERV1 -80 642 541 3937 130 61 36 chr4 18426419 18427355 -165861307 - pTR5 LTR ERV1 -417 2021 741 470 338 73 17 chr4 18427446 18427733 -165860929 - L1M4 LINE L1 -1924 4222 3920 421 326 93 21 chr4 18427740 18428225 -165860437 - L1M4 LINE L1 -2253 3893 3374 397 274 124 71 chr4 18429095 18429660 -165859002 - HAL1b LINE L1 -746 602 8 26 88 0 0 chr4 18430835 18430903 -165857759 + AT_rich Low_complexity Low_complexity 1 68 0 557 306 127 39 chr4 18431236 18431677 -165856985 - HAL1 LINE L1 -785 1722 1243 24 0 0 0 chr4 18432020 18432044 -165856618 + AT_rich Low_complexity Low_complexity 1 24 0 2130 135 122 13 chr4 18432332 18432718 -165855944 - MSTA LTR MaLR 0 428 1 950 327 21 28 chr4 18432738 18433166 -165855496 + MLT2F LTR ERVL 1 425 -238 25 51 0 0 chr4 18433548 18433587 -165855075 + AT_rich Low_complexity Low_complexity 1 39 0 12630 86 6 1 chr4 18434001 18436567 -165852095 + L1PA7 LINE L1 3592 6146 -8 24 77 0 0 chr4 18436642 18436694 -165851968 + AT_rich Low_complexity Low_complexity 1 52 0 2113 99 7 0 chr4 18438172 18438478 -165850184 - AluSp SINE Alu 0 308 1 232 213 16 16 chr4 18439150 18439211 -165849451 - L2 LINE L2 -527 2787 2727 1035 238 70 46 chr4 18439222 18439483 -165849179 + MER58B DNA MER1_type 6 279 -2141 1673 174 3 3 chr4 18439483 18439795 -165848867 + AluJb SINE Alu 3 314 0 1035 238 70 46 chr4 18439795 18439860 -165848802 + MER58B DNA MER1_type 279 341 0 5574 236 67 42 chr4 18439863 18441036 -165847626 + L1ME3 LINE L1 2162 3408 -2738 1482 84 5 14 chr4 18441036 18441251 -165847411 - L1PA7 LINE L1 -2 6152 5940 5574 236 67 42 chr4 18441251 18442064 -165846598 + L1ME3 LINE L1 3408 4199 -1947 593 288 134 23 chr4 18442058 18442877 -165845785 + L1ME3 LINE L1 4457 5366 -780 * 843 286 98 25 chr4 18442896 18443375 -165845287 + L1ME3 LINE L1 5401 5914 -248 592 274 139 19 chr4 18443384 18443592 -165845070 + MIR SINE MIR 8 240 -22 2499 57 0 0 chr4 18443782 18444079 -165844583 - AluY SINE Alu -14 297 1 21 57 0 0 chr4 18445046 18445081 -165843581 + AT_rich Low_complexity Low_complexity 1 35 0 230 231 66 33 chr4 18445152 18445243 -165843419 - L1ME3A LINE L1 -106 6064 5971 384 248 85 0 chr4 18445308 18445449 -165843213 - L1ME3A LINE L1 -222 5948 5796 23 33 0 0 chr4 18446529 18446559 -165842103 + AT_rich Low_complexity Low_complexity 1 30 0 316 321 107 12 chr4 18447520 18447688 -165840974 + MIR SINE MIR 36 219 -43 375 360 34 7 chr4 18447691 18447838 -165840824 + L2 LINE L2 2608 2758 -556 2117 148 6 26 chr4 18448023 18448367 -165840295 + MER1B DNA MER1_type 1 337 0 349 297 50 30 chr4 18448558 18448659 -165840003 + L2 LINE L2 3166 3268 -4 201 333 66 71 chr4 18449226 18449409 -165839253 + L2 LINE L2 2909 3090 -182 422 241 83 9 chr4 18449600 18449708 -165838954 - MIR SINE MIR -25 237 122 940 123 0 0 chr4 18449711 18449866 -165838796 - L1MA8 LINE L1 -31 6260 6106 505 98 12 4 chr4 18449865 18449962 -165838700 - L1MA8 LINE L1 -122 6169 6074 * 344 181 69 0 chr4 18449934 18450006 -165838656 + L1M2 LINE L1 5469 5545 -755 * 11320 59 14 10 chr4 18450486 18452795 -165835867 - L1PA6 LINE L1 -13 6141 3862 563 207 103 11 chr4 18452871 18453045 -165835617 + L1MC5 LINE L1 7724 7913 -48 3931 193 34 12 chr4 18453101 18454391 -165834271 - L1MB2 LINE L1 0 6171 4807 936 237 159 27 chr4 18454766 18455251 -165833411 - Charlie7 DNA MER1_type -1286 1326 778 5723 114 14 0 chr4 18455318 18456427 -165832235 - L1PA13 LINE L1 -2 6161 5031 1678 174 29 6 chr4 18456427 18456772 -165831890 - L1 LINE L1 -865 5281 4929 * 7786 185 53 1 chr4 18456766 18458181 -165830481 - L1PA13 LINE L1 -4026 2771 982 198 0 0 0 chr4 18458181 18458203 -165830459 + (CAG)n Simple_repeat Simple_repeat 2 23 0 7786 185 53 1 chr4 18458203 18458765 -165829897 - L1PA13 LINE L1 -5815 982 450 1492 131 5 5 chr4 18458765 18458987 -165829675 - THE1B LTR MaLR -132 232 11 359 0 0 0 chr4 18458989 18459029 -165829633 - THE1B LTR MaLR -324 40 1 333 218 0 0 chr4 18459032 18459087 -165829575 + L2 LINE L2 3214 3268 -4 28 0 0 0 chr4 18459270 18459298 -165829364 + AT_rich Low_complexity Low_complexity 1 28 0 200 35 35 0 chr4 18459546 18459575 -165829087 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 2367 99 0 3 chr4 18459578 18459882 -165828780 + AluSx SINE Alu 3 305 -7 543 245 117 27 chr4 18460700 18460888 -165827774 - MIR SINE MIR 0 262 58 28 61 0 0 chr4 18461236 18461285 -165827377 + AT_rich Low_complexity Low_complexity 1 49 0 246 263 40 0 chr4 18461299 18461375 -165827287 - L1ME4a LINE L1 -78 6043 5965 330 335 68 15 chr4 18461442 18461589 -165827073 - MIR SINE MIR -40 168 16 379 250 214 42 chr4 18461590 18462094 -165826568 - L1ME4a LINE L1 -179 5942 5352 6614 254 128 15 chr4 18462699 18463347 -165825315 + L2 LINE L2 577 1150 -2164 2199 110 10 3 chr4 18463347 18463647 -165825015 - AluSg1 SINE Alu -7 302 1 6614 254 128 15 chr4 18463647 18465094 -165823568 + L2 LINE L2 1150 2909 -405 200 344 22 0 chr4 18465454 18465544 -165823118 + L3b LINE CR1 1103 1194 -389 31 0 0 0 chr4 18465765 18465796 -165822866 + AT_rich Low_complexity Low_complexity 1 31 0 243 0 0 0 chr4 18466780 18466807 -165821855 + (TG)n Simple_repeat Simple_repeat 2 28 0 198 231 39 19 chr4 18466914 18466966 -165821696 - L2 LINE L2 -6 3266 3214 511 294 41 16 chr4 18467294 18467488 -165821174 - MIR SINE MIR -62 200 2 198 294 91 35 chr4 18467846 18467989 -165820673 - L2 LINE L2 -744 2570 2420 395 154 26 0 chr4 18468577 18468655 -165820007 + (CATA)n Simple_repeat Simple_repeat 2 81 0 382 315 35 21 chr4 18468985 18469128 -165819534 - L2 LINE L2 -1 3271 3127 398 273 74 16 chr4 18470069 18470190 -165818472 - MIR3 SINE MIR -13 195 68 190 180 40 40 chr4 18472160 18472210 -165816452 + L2 LINE L2 3222 3271 -1 216 0 0 0 chr4 18475170 18475194 -165813468 + (T)n Simple_repeat Simple_repeat 1 24 0 257 354 61 0 chr4 18475505 18475604 -165813058 - MIR3 SINE MIR -17 191 87 30 0 0 0 chr4 18475648 18475678 -165812984 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr4 18475726 18475757 -165812905 + AT_rich Low_complexity Low_complexity 1 31 0 229 330 50 40 chr4 18475812 18475912 -165812750 - L2 LINE L2 -31 3241 3141 182 317 127 21 chr4 18476293 18476435 -165812227 - MIR SINE MIR -46 216 60 322 288 23 8 chr4 18477713 18477845 -165810817 + MLT1K LTR MaLR 339 472 -116 31 0 0 0 chr4 18477862 18477893 -165810769 + AT_rich Low_complexity Low_complexity 1 31 0 187 333 50 0 chr4 18477933 18477993 -165810669 - L2 LINE L2 -22 3250 3188 230 325 83 17 chr4 18478075 18478195 -165810467 + L3 LINE CR1 871 998 -579 457 245 28 0 chr4 18478214 18478320 -165810342 - MER5A DNA MER1_type -71 118 10 457 337 59 19 chr4 18478389 18478659 -165810003 + L3 LINE CR1 1149 1429 -148 227 143 48 0 chr4 18478755 18478797 -165809865 - Charlie8 DNA MER1_type -2141 276 233 423 274 0 11 chr4 18478852 18478947 -165809715 - MER91B DNA MER1_type -1 189 96 483 257 28 21 chr4 18480153 18480297 -165808365 + MIR3 SINE MIR 15 159 -49 1991 189 114 16 chr4 18480423 18480915 -165807747 + MLT1F LTR MaLR 2 541 -1 335 341 41 8 chr4 18480917 18481040 -165807622 - MIR SINE MIR -101 161 35 511 273 105 50 chr4 18481341 18481923 -165806739 - L1ME4a LINE L1 -14 6107 5494 196 325 29 86 chr4 18482285 18482494 -165806168 + L2 LINE L2 3075 3271 -1 254 306 73 8 chr4 18482539 18482663 -165805999 + MIR3 SINE MIR 7 138 -70 193 250 0 0 chr4 18482683 18482723 -165805939 + MER5B DNA MER1_type 1 40 -138 180 205 0 0 chr4 18482827 18482866 -165805796 + MIR SINE MIR 114 152 -110 187 351 0 0 chr4 18483540 18483597 -165805065 - L2 LINE L2 -15 3257 3201 519 309 96 5 chr4 18483601 18483821 -165804841 - MIR SINE MIR 0 262 23 779 254 43 35 chr4 18484239 18484471 -165804191 + MIR SINE MIR 29 262 0 2197 103 11 0 chr4 18484723 18485005 -165803657 + AluSx SINE Alu 1 285 -27 921 268 55 28 chr4 18485029 18485391 -165803271 - MLT1L LTR MaLR -75 540 169 315 237 86 32 chr4 18485397 18485490 -165803172 - MER5B DNA MER1_type 0 178 81 200 57 0 29 chr4 18485494 18485529 -165803133 + (TTTAA)n Simple_repeat Simple_repeat 4 37 0 195 42 0 0 chr4 18485550 18485574 -165803088 + (TG)n Simple_repeat Simple_repeat 1 24 0 442 236 97 28 chr4 18485624 18485768 -165802894 - MLT1L LTR MaLR -456 159 6 293 323 89 38 chr4 18485854 18486012 -165802650 + MER5A DNA MER1_type 18 183 -6 433 316 127 5 chr4 18486126 18486338 -165802324 + MIR SINE MIR 20 257 -5 377 305 141 23 chr4 18488672 18488800 -165799862 + MIR3 SINE MIR 20 162 -46 1149 293 93 16 chr4 18489829 18490314 -165798348 - LTR67 LTR ERVL 0 557 36 1760 159 28 7 chr4 18490739 18491029 -165797633 + AluSx SINE Alu 1 296 -16 342 313 56 20 chr4 18491543 18491738 -165796924 - L1ME4a LINE L1 -213 5908 5707 2363 185 75 2 chr4 18492341 18492378 -165796284 - MLT2B2 LTR ERVL 0 515 482 488 16 16 0 chr4 18492378 18492439 -165796223 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 2363 185 75 2 chr4 18492439 18492881 -165795781 - MLT2B2 LTR ERVL -33 482 1 181 267 0 0 chr4 18492965 18493010 -165795652 - L2 LINE L2 0 3313 3269 240 340 187 18 chr4 18493061 18493558 -165795104 + L2 LINE L2 2275 2855 -459 197 213 21 0 chr4 18494456 18494503 -165794159 - L2 LINE L2 -8 3305 3258 317 313 77 62 chr4 18494522 18494730 -165793932 + MIR SINE MIR 22 232 -30 302 244 100 93 chr4 18494852 18494893 -165793769 - MLT1J LTR MaLR 0 511 472 1587 194 17 92 chr4 18494893 18495363 -165793299 + MER63B DNA MER1_type 1 435 -1 302 244 100 93 chr4 18495363 18495600 -165793062 - MLT1J LTR MaLR -39 472 231 1949 146 76 95 chr4 18495630 18496016 -165792646 - MLT1D LTR MaLR 0 505 130 2552 163 21 2 chr4 18496016 18496434 -165792228 - MSTB LTR MaLR 0 426 1 1949 146 76 95 chr4 18496434 18496562 -165792100 - MLT1D LTR MaLR -375 130 1 267 189 0 0 chr4 18496913 18496966 -165791696 + C-rich Low_complexity Low_complexity 3 55 0 2262 150 12 28 chr4 18498316 18498743 -165789919 - L1MB3 LINE L1 -8 6175 5756 778 139 24 2 chr4 18498755 18498936 -165789726 - L1P4 LINE L1 -722 5443 5255 246 322 81 0 chr4 18500567 18500654 -165788008 - MIR3 SINE MIR -28 180 87 2101 93 0 34 chr4 18500938 18501253 -165787409 + AluSq SINE Alu 2 306 0 745 139 27 0 chr4 18503216 18503440 -165785222 + L1MA5A LINE L1 6011 6274 -23 247 289 7 22 chr4 18505274 18505409 -165783253 + CT-rich Low_complexity Low_complexity 3 135 0 215 73 49 0 chr4 18506338 18506379 -165782283 + T-rich Low_complexity Low_complexity 2 44 0 7611 26 5 2 chr4 18506391 18507747 -165780915 - L1PA4 LINE L1 -8 6147 4790 7006 24 0 0 chr4 18507747 18508606 -165780056 + L1PA4 LINE L1 3903 4761 -1385 224 282 27 87 chr4 18509029 18509178 -165779484 + L2 LINE L2 2994 3133 -180 3684 125 40 12 chr4 18509201 18509802 -165778860 - MER51A LTR ERV1 -16 618 1 462 282 86 12 chr4 18509817 18509980 -165778682 + L2 LINE L2 3138 3312 -1 547 162 174 54 chr4 18511008 18511175 -165777487 + MER3 DNA MER1_type 1 187 -22 1790 159 0 0 chr4 18511420 18511691 -165776971 + AluJb SINE Alu 25 295 -17 1631 197 153 2 chr4 18511715 18511753 -165776909 - MLT2B1 LTR ERVL -2 518 487 396 0 0 0 chr4 18511753 18511797 -165776865 + (CA)n Simple_repeat Simple_repeat 2 45 0 1631 197 153 2 chr4 18511797 18512184 -165776478 - MLT2B1 LTR ERVL -33 487 29 2097 139 16 40 chr4 18513322 18513695 -165774967 + THE1B LTR MaLR 1 364 0 232 319 9 35 chr4 18513851 18513964 -165774698 + MIR3 SINE MIR 1 110 -98 1266 133 49 61 chr4 18513964 18514228 -165774434 - L1MA9 LINE L1 -4 6308 6048 1005 205 36 0 chr4 18514341 18514565 -165774097 - Charlie1 DNA MER1_type -2529 232 1 847 264 60 90 chr4 18514599 18515000 -165773662 + L2 LINE L2 2924 3312 -1 1323 138 17 0 chr4 18515041 18515280 -165773382 - L1MA7 LINE L1 -3 6288 6046 2897 75 8 2 chr4 18515289 18515691 -165772971 - L1PA8 LINE L1 -3 6169 5766 2115 129 10 7 chr4 18516035 18516344 -165772318 - AluSx SINE Alu -2 310 1 743 226 56 64 chr4 18517028 18517089 -165771573 - MIR SINE MIR -19 243 183 390 21 0 0 chr4 18517089 18517136 -165771526 + (TA)n Simple_repeat Simple_repeat 2 48 0 743 226 56 64 chr4 18517136 18517308 -165771354 - MIR SINE MIR -79 183 12 937 230 5 0 chr4 18517461 18517665 -165770997 + MER3 DNA MER1_type 5 209 0 21 0 0 0 chr4 18519053 18519074 -165769588 + AT_rich Low_complexity Low_complexity 1 21 0 1674 290 9 69 chr4 18519341 18520011 -165768651 + L1M2 LINE L1 14 643 -6566 2878 190 20 12 chr4 18520241 18520889 -165767773 + L1M2 LINE L1 1753 2405 -4804 1040 69 0 0 chr4 18520883 18521027 -165767635 - L1PA7 LINE L1 -332 5822 5679 * 2268 73 0 0 chr4 18521027 18521312 -165767350 + L1PA7 LINE L1 5852 6137 -17 459 0 0 0 chr4 18521312 18521363 -165767299 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 252 0 0 0 chr4 18521363 18521391 -165767271 + (CA)n Simple_repeat Simple_repeat 2 29 0 357 159 0 0 chr4 18521391 18521454 -165767208 + (TA)n Simple_repeat Simple_repeat 1 63 0 12555 200 36 27 chr4 18521455 18525786 -165762876 + L1M2 LINE L1 2372 6776 -586 844 198 14 10 chr4 18525791 18525998 -165762664 + L1MA5 LINE L1 5034 5241 -905 3072 153 32 3 chr4 18526048 18526114 -165762548 + L1MA5 LINE L1 5715 5778 -522 339 25 0 0 chr4 18526114 18526154 -165762508 + (CA)n Simple_repeat Simple_repeat 2 41 0 3072 153 32 3 chr4 18526154 18526655 -165762007 + L1MA5 LINE L1 5778 6298 -2 1154 244 28 102 chr4 18526797 18527091 -165761571 - L2 LINE L2 0 3313 3113 2178 101 0 14 chr4 18527091 18527414 -165761248 + AluSx SINE Alu 1 319 0 1154 244 28 102 chr4 18527414 18527799 -165760863 - L2 LINE L2 -200 3113 2701 436 248 58 0 chr4 18527799 18527936 -165760726 - L1ME2 LINE L1 -12 6152 6008 1431 224 61 3 chr4 18527937 18528280 -165760382 + MLT1A1 LTR MaLR 3 365 0 340 226 49 39 chr4 18528284 18528386 -165760276 - L1MDa LINE L1 -2990 3550 3448 1035 227 23 0 chr4 18528386 18528602 -165760060 - MER58A DNA MER1_type -3 221 1 1058 209 110 25 chr4 18528634 18528998 -165759664 - L1MDa LINE L1 -5189 1351 957 475 214 8 40 chr4 18528992 18529118 -165759544 - L1MDa LINE L1 -6385 155 34 * 8595 160 25 11 chr4 18529166 18530882 -165757780 - L1PA13 LINE L1 -6 6157 4401 189 0 0 0 chr4 18530882 18530903 -165757759 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 8595 160 25 11 chr4 18530903 18531606 -165757056 - L1PA13 LINE L1 -1762 4401 3709 1338 214 59 15 chr4 18531614 18532006 -165756656 - L1M4 LINE L1 -3127 3019 2611 209 301 52 69 chr4 18532251 18532424 -165756238 + L2 LINE L2 2804 2973 -299 259 253 89 13 chr4 18532567 18532646 -165756016 - L2 LINE L2 -29 3284 3200 23 0 0 0 chr4 18533058 18533081 -165755581 + AT_rich Low_complexity Low_complexity 1 23 0 251 295 75 17 chr4 18533251 18533378 -165755284 - MIR SINE MIR -63 145 18 605 311 165 10 chr4 18534136 18534548 -165754114 - L2 LINE L2 -1 3312 2837 1177 84 2 21 chr4 18535178 18535519 -165753143 + (TTTC)n Simple_repeat Simple_repeat 1 516 0 327 293 198 24 chr4 18535816 18536028 -165752634 - MIR SINE MIR 0 262 14 256 333 32 57 chr4 18536203 18536326 -165752336 - L2 LINE L2 -3 3269 3150 1531 261 116 30 chr4 18536453 18537094 -165751568 - L2 LINE L2 -1 3312 2564 1597 208 30 24 chr4 18537094 18537464 -165751198 + MLT1A2 LTR MaLR 1 372 -2 1531 261 116 30 chr4 18537464 18537820 -165750842 - L2 LINE L2 -749 2564 2240 272 244 202 42 chr4 18537787 18537906 -165750756 + MIR SINE MIR 17 154 -108 * 773 106 0 8 chr4 18538057 18538180 -165750482 + (TCTCC)n Simple_repeat Simple_repeat 3 124 0 1834 167 20 0 chr4 18538180 18538473 -165750189 - AluSx SINE Alu -13 299 1 382 350 24 0 chr4 18538547 18538670 -165749992 + MER5A DNA MER1_type 61 186 -3 214 356 23 53 chr4 18540319 18540451 -165748211 + L2 LINE L2 3179 3306 -7 203 265 206 0 chr4 18540572 18540640 -165748022 - MIR SINE MIR -18 244 163 268 287 138 42 chr4 18541039 18541136 -165747526 - L3 LINE CR1 -2 1575 1489 2643 106 3 13 chr4 18541136 18541515 -165747147 + THE1C LTR MaLR 1 375 0 268 287 138 42 chr4 18541515 18541584 -165747078 - L3 LINE CR1 -88 1489 1393 227 282 24 35 chr4 18541678 18541763 -165746899 - L3 LINE CR1 -356 1221 1138 211 350 70 20 chr4 18541769 18541869 -165746793 - L2 LINE L2 -43 3229 3125 360 360 17 34 chr4 18541961 18542255 -165746407 + L2 LINE L2 2097 2385 -929 277 364 10 0 chr4 18542603 18542702 -165745960 + L2 LINE L2 3173 3272 0 295 298 0 12 chr4 18542804 18542888 -165745774 - L2 LINE L2 -4 3268 3186 191 234 43 0 chr4 18543355 18543402 -165745260 - MIR3 SINE MIR -48 160 112 181 342 105 9 chr4 18543930 18544044 -165744618 + MIR SINE MIR 17 141 -67 258 196 149 56 chr4 18544215 18544322 -165744340 + MIR3 SINE MIR 89 205 -3 333 0 0 0 chr4 18544769 18544806 -165743856 + (GA)n Simple_repeat Simple_repeat 2 38 0 253 78 0 59 chr4 18545181 18545232 -165743430 + MLT1J LTR MaLR 98 145 -366 247 133 22 0 chr4 18545242 18545287 -165743375 + MLT2F LTR ERVL 93 138 -525 196 344 31 31 chr4 18545413 18545509 -165743153 + MIR SINE MIR 104 199 -63 346 353 100 13 chr4 18545736 18545886 -165742776 - MIR3 SINE MIR -15 193 31 1791 160 3 20 chr4 18545892 18546186 -165742476 + AluJo SINE Alu 4 292 -20 276 242 47 62 chr4 18546198 18546326 -165742336 + MIR SINE MIR 93 218 -44 242 73 44 59 chr4 18546414 18546509 -165742153 + (ATTTG)n Simple_repeat Simple_repeat 1 93 0 488 237 51 46 chr4 18546923 18547102 -165741560 + MIR3 SINE MIR 3 182 -63 229 305 0 0 chr4 18547548 18547607 -165741055 + G-rich Low_complexity Low_complexity 1 59 0 478 279 188 10 chr4 18548439 18548636 -165740026 - MIR SINE MIR -10 252 21 2697 140 16 7 chr4 18549144 18549595 -165739067 - L1PA15 LINE L1 -1 6164 5710 477 302 127 24 chr4 18549595 18549800 -165738862 + MIR SINE MIR 20 245 -17 419 135 54 0 chr4 18550046 18550120 -165738542 + MLT1C LTR MaLR 289 366 -101 458 168 53 0 chr4 18550567 18550660 -165738002 - Charlie7 DNA MER1_type -1923 689 592 408 147 0 15 chr4 18550660 18550728 -165737934 - MLT1C LTR MaLR 0 467 401 2541 285 11 25 chr4 18551238 18551965 -165736697 + L1PA15 LINE L1 1 717 -6070 14349 206 35 11 chr4 18552037 18554005 -165734657 + L1PA15 LINE L1 1269 3189 -3627 243 0 0 0 chr4 18554005 18554032 -165734630 + (CAA)n Simple_repeat Simple_repeat 1 27 0 14349 206 35 11 chr4 18554032 18554516 -165734146 + L1PA15 LINE L1 3189 3660 -3156 2445 81 0 0 chr4 18554516 18554824 -165733838 + AluY SINE Alu 1 308 -3 14349 206 35 11 chr4 18554824 18557769 -165730893 + L1PA15 LINE L1 3660 6814 -2 371 259 108 27 chr4 18558018 18558387 -165730275 + MLT1G1 LTR MaLR 119 538 -4 237 303 124 68 chr4 18558421 18558655 -165730007 + L2 LINE L2 2844 3090 -182 427 290 106 57 chr4 18558765 18558980 -165729682 + MIR SINE MIR 10 231 -31 248 319 80 64 chr4 18559042 18559293 -165729369 + L2 LINE L2 3014 3268 -4 211 269 202 0 chr4 18559493 18559597 -165729065 + MIR3 SINE MIR 83 207 -1 260 306 56 56 chr4 18560155 18560299 -165728363 - L2 LINE L2 -306 2966 2823 230 303 104 17 chr4 18560381 18560622 -165728040 + L1ME4a LINE L1 5816 6077 -44 2192 143 0 0 chr4 18560622 18560930 -165727732 - AluSq SINE Alu -5 308 1 225 282 14 0 chr4 18561396 18561467 -165727195 + GA-rich Low_complexity Low_complexity 3 74 0 242 158 49 98 chr4 18561468 18561550 -165727112 + L1MA10 LINE L1 6257 6334 0 * 486 238 61 17 chr4 18561545 18561726 -165726936 + L1M4 LINE L1 4992 5180 -966 2109 146 0 37 chr4 18562089 18562439 -165726223 - MER1B DNA MER1_type 0 337 1 398 257 29 0 chr4 18562677 18562782 -165725880 - MIR SINE MIR -115 147 40 22 0 0 0 chr4 18563214 18563236 -165725426 + AT_rich Low_complexity Low_complexity 1 22 0 2279 109 0 0 chr4 18563900 18564204 -165724458 - AluSx SINE Alu -6 306 3 202 257 71 29 chr4 18564791 18564861 -165723801 + MIR SINE MIR 84 156 -106 504 283 72 6 chr4 18564931 18565097 -165723565 - MIR SINE MIR -4 258 82 194 236 11 39 chr4 18565156 18565338 -165723324 + CT-rich Low_complexity Low_complexity 1 177 0 2169 108 0 3 chr4 18565361 18565648 -165723014 + AluSg SINE Alu 1 286 -24 909 210 119 62 chr4 18565661 18566046 -165722616 + MLT1I LTR MaLR 1 407 -2 329 197 0 0 chr4 18566942 18567013 -165721649 - MER96 DNA MER1_type? 0 175 105 991 325 59 60 chr4 18567014 18567743 -165720919 - L2 LINE L2 -357 2957 2230 989 258 62 11 chr4 18567776 18568129 -165720533 + L1MEc LINE L1 37 407 -5989 3273 200 10 0 chr4 18568432 18569138 -165719524 - L1PA16 LINE L1 -1697 4449 3737 4850 192 9 30 chr4 18569139 18569255 -165719407 + L1PA16 LINE L1 4467 4584 -1582 8101 77 1 0 chr4 18569255 18571124 -165717538 - L1PA7 LINE L1 0 6154 4283 4850 192 9 30 chr4 18571124 18572746 -165715916 + L1PA16 LINE L1 4584 6159 -7 268 267 199 7 chr4 18572831 18572977 -165715685 + L2 LINE L2 1923 2096 -1218 211 321 0 0 chr4 18573058 18573142 -165715520 + L2 LINE L2 2306 2389 -925 1745 252 19 36 chr4 18573935 18574459 -165714203 - LTR40a LTR ERVL 0 519 5 212 389 25 12 chr4 18574481 18574643 -165714019 + L2 LINE L2 2597 2760 -554 335 217 189 9 chr4 18575640 18575746 -165712916 + MIR SINE MIR 67 191 -71 1389 136 62 4 chr4 18575949 18576222 -165712440 + L1MA7 LINE L1 6003 6291 0 256 278 183 9 chr4 18576362 18576477 -165712185 + L2 LINE L2 3129 3263 -9 2289 102 3 3 chr4 18576525 18576828 -165711834 + AluSg SINE Alu 1 303 -7 318 233 49 86 chr4 18576895 18577058 -165711604 - MER112 DNA MER1_type -103 157 1 2303 104 3 0 chr4 18577112 18577419 -165711243 - AluY SINE Alu -3 308 1 183 42 0 0 chr4 18578610 18578634 -165710028 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2389 75 3 7 chr4 18579179 18579484 -165709178 - AluY SINE Alu -7 304 1 211 286 100 0 chr4 18579995 18580065 -165708597 - MIR SINE MIR -97 165 89 306 291 136 0 chr4 18580109 18580219 -165708443 + L2 LINE L2 3148 3272 0 210 171 0 53 chr4 18581820 18581896 -165706766 + (TAA)n Simple_repeat Simple_repeat 1 72 0 247 288 56 8 chr4 18582090 18582215 -165706447 - L1MC5 LINE L1 -168 7793 7663 2226 115 33 36 chr4 18582472 18582837 -165705825 - THE1B LTR MaLR 0 364 1 976 102 23 0 chr4 18583072 18583200 -165705462 - AluSq/x SINE Alu -181 131 1 351 238 198 0 chr4 18583600 18583701 -165704961 - L2 LINE L2 0 3313 3193 241 313 69 62 chr4 18583735 18583879 -165704783 - MIR SINE MIR -22 240 96 1067 313 84 45 chr4 18584094 18584983 -165703679 + L2 LINE L2 2366 3312 -1 371 279 29 29 chr4 18585282 18585418 -165703244 - MIR SINE MIR -57 151 16 499 295 62 36 chr4 18585981 18586174 -165702488 + MIR SINE MIR 13 210 -52 1602 229 9 0 chr4 18586632 18586982 -165701680 + MLT1A1 LTR MaLR 1 353 -12 541 266 118 0 chr4 18587200 18587263 -165701399 + MER112 DNA MER1_type 1 55 -205 254 29 29 0 chr4 18587263 18587298 -165701364 + (CA)n Simple_repeat Simple_repeat 2 37 0 541 266 118 0 chr4 18587298 18587463 -165701199 + MER112 DNA MER1_type 55 256 -4 310 268 28 28 chr4 18588016 18588158 -165700504 + MLT1L LTR MaLR 461 602 -13 224 245 0 0 chr4 18588506 18588559 -165700103 + T-rich Low_complexity Low_complexity 1 53 0 606 333 91 69 chr4 18588580 18589338 -165699324 + L2 LINE L2 1890 2664 -650 582 336 71 28 chr4 18589444 18590010 -165698652 - L1M4 LINE L1 -1706 4440 3851 1252 292 72 12 chr4 18590489 18590904 -165697758 + L2 LINE L2 2497 2936 -378 1162 269 101 20 chr4 18590905 18591311 -165697351 - L1MEc LINE L1 -5919 477 39 600 249 57 62 chr4 18591334 18591543 -165697119 + L2 LINE L2 3105 3312 -1 348 127 0 0 chr4 18592150 18592205 -165696457 + (TG)n Simple_repeat Simple_repeat 2 56 0 576 312 93 23 chr4 18592343 18592644 -165696018 + L2 LINE L2 2992 3313 0 449 346 33 25 chr4 18592744 18592987 -165695675 - L2 LINE L2 -475 2839 2595 5206 240 46 24 chr4 18593177 18594706 -165693956 + L1M4 LINE L1 6 1567 -4975 876 179 4 11 chr4 18594707 18594972 -165693690 + GA-rich Low_complexity Low_complexity 1 263 0 2409 239 119 25 chr4 18595004 18595192 -165693470 + L1M4 LINE L1 1537 1706 -4938 2473 0 0 11 chr4 18595192 18595465 -165693197 - AluYa5 SINE Alu -3 308 39 2409 239 119 25 chr4 18595465 18596785 -165691877 + L1M4 LINE L1 1706 3179 -3465 452 299 102 6 chr4 18597357 18597534 -165691128 + MIR SINE MIR 31 224 -38 716 61 10 0 chr4 18599240 18599338 -165689324 + (TTCCC)n Simple_repeat Simple_repeat 1 99 0 188 360 70 35 chr4 18599386 18599472 -165689190 - L2 LINE L2 -17 3255 3167 282 299 82 48 chr4 18600581 18600728 -165687934 + MIR3 SINE MIR 27 178 -30 3935 193 8 11 chr4 18604805 18605631 -165683031 + L1PA15 LINE L1 5341 6164 -1 300 324 183 0 chr4 18606139 18606281 -165682381 + MIR SINE MIR 21 188 -74 1276 213 95 32 chr4 18606532 18606964 -165681698 + LTR2B LTR ERV1 32 490 0 359 332 87 33 chr4 18606973 18607548 -165681114 - L1MEc LINE L1 -5760 636 31 6071 186 37 29 chr4 18607784 18609639 -165679023 + L1P3 LINE L1 530 2415 -4046 28 0 0 0 chr4 18609943 18609971 -165678691 + AT_rich Low_complexity Low_complexity 1 28 0 310 236 0 0 chr4 18610154 18610209 -165678453 - L2 LINE L2 -4 3268 3214 343 0 0 0 chr4 18610212 18610252 -165678410 + THE1B LTR MaLR 1 40 -324 1409 131 5 5 chr4 18610254 18610476 -165678186 + THE1B LTR MaLR 11 232 -132 1194 213 49 0 chr4 18610476 18610720 -165677942 + L1PA13 LINE L1 450 705 -6082 899 257 66 12 chr4 18612796 18613037 -165675625 + MIR SINE MIR 9 262 0 32 103 0 0 chr4 18613098 18613214 -165675448 + AT_rich Low_complexity Low_complexity 1 116 0 246 322 81 0 chr4 18614939 18615026 -165673636 - MIR3 SINE MIR -28 180 87 2219 98 0 28 chr4 18615310 18615627 -165673035 + AluSx SINE Alu 2 309 -3 5294 210 20 2 chr4 18615632 18616829 -165671833 + L1P LINE L1 3178 4395 -1751 24 77 0 0 chr4 18617488 18617540 -165671122 + AT_rich Low_complexity Low_complexity 1 52 0 6550 81 14 0 chr4 18617616 18618727 -165669935 - L1PA7 LINE L1 -9 6145 5031 1087 207 43 29 chr4 18618727 18619075 -165669587 - L1 LINE L1 -865 5281 4929 509 283 49 101 chr4 18619500 18619786 -165668876 + L2 LINE L2 3042 3312 -1 1340 138 17 0 chr4 18619827 18620066 -165668596 - L1MA7 LINE L1 -3 6288 6046 6837 71 7 16 chr4 18620075 18621722 -165666940 - L1PA8 LINE L1 -3 6169 4529 382 350 24 0 chr4 18623158 18623281 -165665381 - MER5A DNA MER1_type -3 186 61 2360 101 0 13 chr4 18623355 18623662 -165665000 + AluSx SINE Alu 1 303 -9 181 342 105 9 chr4 18625142 18625256 -165663406 + MIR SINE MIR 17 141 -67 258 196 149 56 chr4 18625427 18625534 -165663128 + MIR3 SINE MIR 89 205 -3 315 0 0 0 chr4 18625981 18626016 -165662646 + (GA)n Simple_repeat Simple_repeat 2 36 0 253 78 0 59 chr4 18626391 18626442 -165662220 + MLT1J LTR MaLR 98 145 -366 247 133 22 0 chr4 18626452 18626497 -165662165 + MLT2F LTR ERVL 93 138 -525 196 344 31 31 chr4 18626623 18626719 -165661943 + MIR SINE MIR 104 199 -63 346 353 100 13 chr4 18626946 18627096 -165661566 - MIR3 SINE MIR -15 193 31 1085 219 4 25 chr4 18627102 18627339 -165661323 + AluJb SINE Alu 4 235 -77 971 283 134 31 chr4 18677372 18677885 -165610777 - L2 LINE L2 -422 2892 2327 8142 22 0 0 chr4 18678234 18679192 -165609470 - L1PA4 LINE L1 -5 6150 5190 320 0 25 0 chr4 18679784 18679824 -165608838 + (TC)n Simple_repeat Simple_repeat 2 42 0 2554 177 6 47 chr4 18679832 18680302 -165608360 - MLT2B2 LTR ERVL -64 451 1 261 308 70 42 chr4 18680305 18680488 -165608174 - L2 LINE L2 -181 3091 2886 1732 172 0 26 chr4 18680488 18680790 -165607872 + AluJo SINE Alu 1 294 -18 261 308 70 42 chr4 18680790 18680889 -165607773 - L2 LINE L2 -386 2886 2791 221 300 0 0 chr4 18681651 18681731 -165606931 + MIR SINE MIR 183 262 0 222 62 0 0 chr4 18681918 18681950 -165606712 + (TG)n Simple_repeat Simple_repeat 1 32 0 253 286 44 22 chr4 18682024 18682123 -165606539 + MLT1I LTR MaLR 44 133 -276 239 350 117 25 chr4 18682542 18682705 -165605957 - MIR3 SINE MIR -21 187 10 1096 141 12 0 chr4 18683700 18683870 -165604792 - AluSg/x SINE Alu -11 301 130 1387 160 48 111 chr4 18684071 18684403 -165604259 + AluJo SINE Alu 1 311 -1 1335 198 171 56 chr4 18684703 18685153 -165603509 - MLT1D LTR MaLR -3 502 1 558 209 87 51 chr4 18685588 18685842 -165602820 + L1MC5 LINE L1 7644 7906 -55 24 53 0 0 chr4 18686088 18686126 -165602536 + AT_rich Low_complexity Low_complexity 1 38 0 482 228 117 21 chr4 18686505 18686650 -165602012 - MIR SINE MIR -38 224 66 995 181 98 5 chr4 18686735 18686940 -165601722 + AluJb SINE Alu 2 225 -87 7588 53 3 3 chr4 18686952 18687898 -165600764 + L1PA7 LINE L1 5209 6154 0 548 114 13 0 chr4 18688711 18688790 -165599872 + MADE1 DNA Mariner 1 80 0 567 283 148 70 chr4 18688790 18689106 -165599556 - MLT1G1 LTR MaLR -71 484 130 1655 223 128 38 chr4 18689106 18689145 -165599517 - MLT2B1 LTR ERVL 0 520 486 441 54 0 0 chr4 18689145 18689201 -165599461 + (TG)n Simple_repeat Simple_repeat 2 57 0 1655 223 128 38 chr4 18689201 18689636 -165599026 - MLT2B1 LTR ERVL -34 486 3 567 283 148 70 chr4 18689636 18689724 -165598938 - MLT1G1 LTR MaLR -425 130 50 267 342 24 13 chr4 18689771 18689888 -165598774 + MER5A DNA MER1_type 59 169 -9 385 262 106 14 chr4 18690127 18690268 -165598394 - L1MC3 LINE L1 -3 7782 7629 216 174 0 82 chr4 18690322 18690420 -165598242 + (TATAA)n Simple_repeat Simple_repeat 4 93 0 1694 209 48 15 chr4 18690421 18690727 -165597935 - L1MD3 LINE L1 -162 7833 7510 210 118 0 0 chr4 18690727 18690761 -165597901 + (CATAT)n Simple_repeat Simple_repeat 4 37 0 1694 209 48 15 chr4 18690761 18690851 -165597811 - L1MD3 LINE L1 -485 7510 7424 578 202 28 0 chr4 18690851 18690960 -165597702 - MLT1F1 LTR MaLR -420 147 36 24 0 0 0 chr4 18691356 18691380 -165597282 + AT_rich Low_complexity Low_complexity 1 24 0 257 300 25 0 chr4 18692182 18692262 -165596400 - MIR SINE MIR -16 246 165 863 250 111 33 chr4 18692267 18692627 -165596035 + MLT1I LTR MaLR 19 406 -3 251 263 100 25 chr4 18692627 18692707 -165595955 - MIR SINE MIR -68 140 55 430 267 192 37 chr4 18693208 18693798 -165594864 - L2 LINE L2 -5 3308 2611 514 211 145 18 chr4 18694185 18694351 -165594311 - MER53 DNA DNA -2 187 1 1728 213 9 81 chr4 18695581 18696027 -165592635 - MLT2D LTR ERVL 0 414 1 297 145 0 81 chr4 18696067 18696129 -165592533 - MLT2C1 LTR ERVL 0 663 464 1112 213 70 51 chr4 18696188 18696530 -165592132 - MLT2C1 LTR ERVL -41 423 1 1919 165 43 6 chr4 18696538 18696866 -165591796 - MER2 DNA MER2_type 0 345 6 384 319 39 68 chr4 18697042 18697115 -165591547 - MIR SINE MIR -3 259 185 1981 157 3 0 chr4 18697115 18697415 -165591247 - AluJb SINE Alu -10 302 2 384 319 39 68 chr4 18697415 18697548 -165591114 - MIR SINE MIR -77 185 59 297 229 19 102 chr4 18699418 18699556 -165589106 - MIR SINE MIR -62 146 57 * 497 242 33 26 chr4 18699554 18699707 -165588955 - MIR SINE MIR -94 168 15 191 306 97 0 chr4 18699888 18699950 -165588712 - L2 LINE L2 0 3272 3205 727 283 146 45 chr4 18699970 18700745 -165587917 + L2 LINE L2 2447 3311 -2 201 261 22 0 chr4 18700760 18700806 -165587856 - L2 LINE L2 -94 3219 3173 255 279 13 13 chr4 18701084 18701163 -165587499 - L3 LINE CR1 -235 1342 1264 338 205 111 17 chr4 18701164 18701281 -165587381 - L1ME4a LINE L1 -18 6103 5976 508 285 229 12 chr4 18701383 18701706 -165586956 - L2 LINE L2 -453 2861 2469 350 294 59 49 chr4 18702646 18702811 -165585851 - MIR SINE MIR -11 251 82 1697 181 114 18 chr4 18702811 18703143 -165585519 + MLT1A1 LTR MaLR 2 365 0 350 294 59 49 chr4 18703143 18703181 -165585481 - MIR SINE MIR -180 82 46 243 324 94 55 chr4 18703401 18703710 -165584952 - L2 LINE L2 -8 3264 2944 25 51 0 0 chr4 18704029 18704068 -165584594 + AT_rich Low_complexity Low_complexity 1 39 0 336 24 0 0 chr4 18704150 18704191 -165584471 + (TG)n Simple_repeat Simple_repeat 2 42 0 719 263 0 13 chr4 18704192 18704344 -165584318 - FRAM SINE Alu -16 150 1 364 331 123 19 chr4 18706506 18706715 -165581947 + MIR SINE MIR 17 250 -12 1719 251 126 39 chr4 18706829 18707368 -165581294 - MLT1E LTR MaLR 0 593 8 213 313 148 36 chr4 18707372 18707676 -165580986 - L2 LINE L2 -647 2667 2330 228 248 95 38 chr4 18708303 18708408 -165580254 - MLT1H LTR MaLR 0 549 439 2200 84 28 3 chr4 18708561 18708847 -165579815 - AluY SINE Alu -18 293 1 242 267 30 30 chr4 18708876 18708977 -165579685 - MLT1H LTR MaLR -375 174 74 * 635 276 28 39 chr4 18708972 18709153 -165579509 - MER8 DNA MER2_type -60 179 1 2205 96 3 13 chr4 18709321 18709624 -165579038 - AluY SINE Alu -11 300 1 1281 218 24 49 chr4 18709867 18710256 -165578406 - MLT2C1 LTR ERVL -2 412 13 232 263 66 13 chr4 18710285 18710361 -165578301 + MIR SINE MIR 117 196 -66 212 238 111 16 chr4 18710849 18710912 -165577750 + MIR SINE MIR 85 153 -55 327 339 0 0 chr4 18710916 18711046 -165577616 + MER94 DNA DNA 4 133 -1 185 161 0 0 chr4 18711091 18711122 -165577540 - L2 LINE L2 -16 3256 3226 204 40 0 0 chr4 18712019 18712044 -165576618 + (TG)n Simple_repeat Simple_repeat 2 26 0 556 217 6 6 chr4 18712063 18712238 -165576424 + (TG)n Simple_repeat Simple_repeat 2 176 0 1277 244 56 44 chr4 18713000 18713430 -165575232 + MLT1C LTR MaLR 17 451 -16 967 229 14 36 chr4 18713700 18713923 -165574739 - MER20 DNA MER1_type -1 218 1 2730 78 91 10 chr4 18714041 18714401 -165574261 + MLT2A1 LTR ERVL 16 412 -32 216 0 0 0 chr4 18714401 18714425 -165574237 + (TA)n Simple_repeat Simple_repeat 2 25 0 2730 78 91 10 chr4 18714425 18714461 -165574201 + MLT2A1 LTR ERVL 412 444 0 320 287 133 0 chr4 18714885 18715028 -165573634 - MER103 DNA DNA -3 163 2 244 347 58 0 chr4 18715215 18715336 -165573326 + MER102a DNA MER1_type 177 304 -26 345 129 0 198 chr4 18715850 18715966 -165572696 + L1MA9 LINE L1 6182 6274 -38 786 295 63 31 chr4 18717458 18718019 -165570643 - L2 LINE L2 -31 3282 2708 182 315 103 48 chr4 18718110 18718256 -165570406 + L2 LINE L2 3111 3264 -8 31 26 0 0 chr4 18719676 18719714 -165568948 + AT_rich Low_complexity Low_complexity 1 38 0 222 318 0 15 chr4 18719849 18719915 -165568747 - MIR SINE MIR -120 142 78 258 250 0 0 chr4 18720210 18720282 -165568380 + CT-rich Low_complexity Low_complexity 1 72 0 285 248 64 46 chr4 18721476 18721585 -165567077 + MIR SINE MIR 20 130 -78 1040 303 96 12 chr4 18721828 18722244 -165566418 - L2 LINE L2 -4 3309 2859 1556 186 17 24 chr4 18724155 18724446 -165564216 + AluJo SINE Alu 1 289 -23 249 33 0 0 chr4 18725571 18725601 -165563061 + (TCCA)n Simple_repeat Simple_repeat 1 30 0 193 378 112 0 chr4 18725602 18725700 -165562962 - L2 LINE L2 -6 3266 3158 217 296 89 45 chr4 18726266 18726445 -165562217 + MIR SINE MIR 56 242 -20 796 287 16 12 chr4 18726582 18726836 -165561826 + MIR SINE MIR 2 256 -6 219 385 18 0 chr4 18727544 18727653 -165561009 + MIR SINE MIR 43 153 -55 290 305 75 80 chr4 18727680 18727880 -165560782 - MIR SINE MIR -18 244 46 207 204 0 0 chr4 18727996 18728045 -165560617 + CT-rich Low_complexity Low_complexity 2 50 0 245 296 108 54 chr4 18728149 18728335 -165560327 + L2 LINE L2 3117 3312 -1 247 339 133 14 chr4 18728369 18728587 -165560075 + L3 LINE CR1 1311 1554 -23 186 246 277 0 chr4 18728644 18728709 -165559953 - L2 LINE L2 -2 3270 3188 350 312 87 35 chr4 18728739 18728912 -165559750 - MIR SINE MIR -27 235 54 206 341 37 30 chr4 18729517 18729582 -165559080 + MIR3 SINE MIR 25 88 -120 2043 196 25 6 chr4 18729582 18729940 -165558722 - MLT1A1 LTR MaLR 0 365 1 206 341 37 30 chr4 18729940 18730009 -165558653 + MIR3 SINE MIR 88 160 -48 297 353 45 7 chr4 18730809 18730976 -165557686 + MIR SINE MIR 64 236 -26 268 360 44 26 chr4 18731393 18731507 -165557155 - L2 LINE L2 -5 3267 3152 268 230 30 60 chr4 18731824 18731924 -165556738 - MIR SINE MIR -112 150 54 271 304 68 48 chr4 18732578 18732828 -165555834 + L2 LINE L2 2507 2761 -553 251 347 8 16 chr4 18732983 18733107 -165555555 + L2 LINE L2 2942 3064 -208 2443 93 3 0 chr4 18733527 18733837 -165554825 + AluSp SINE Alu 1 311 -2 532 329 82 59 chr4 18733892 18734676 -165553986 + L2 LINE L2 563 1364 -1950 2471 58 0 7 chr4 18734778 18735073 -165553589 + AluY SINE Alu 1 293 -18 309 333 26 19 chr4 18735557 18735713 -165552949 + L2 LINE L2 2506 2662 -652 938 142 321 28 chr4 18735736 18735847 -165552815 - Tigger3b DNA MER2_type -1797 1232 1155 2853 107 5 0 chr4 18735847 18736220 -165552442 + THE1C LTR MaLR 1 375 0 938 142 321 28 chr4 18736220 18736326 -165552336 - Tigger3b DNA MER2_type -1874 1155 951 968 106 38 0 chr4 18736334 18736466 -165552196 + L1PA11 LINE L1 6034 6170 -4 189 107 0 0 chr4 18736567 18736595 -165552067 + (TATATG)n Simple_repeat Simple_repeat 1 28 0 264 239 23 23 chr4 18736596 18736684 -165551978 - L1MC4 LINE L1 -1341 6701 6614 237 219 0 83 chr4 18736611 18736707 -165551955 + L1MC4 LINE L1 6615 6702 -1340 * 1413 98 0 25 chr4 18736707 18736910 -165551752 - AluY SINE Alu -113 198 1 4809 132 76 35 chr4 18737291 18737354 -165551308 - Tigger3b DNA MER2_type -2080 948 889 203 61 30 0 chr4 18737354 18737387 -165551275 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 4809 132 76 35 chr4 18737387 18737474 -165551188 - Tigger3b DNA MER2_type -2139 889 807 2178 119 0 17 chr4 18737474 18737769 -165550893 + AluSx SINE Alu 1 290 -22 4809 132 76 35 chr4 18737769 18738321 -165550341 - Tigger3b DNA MER2_type -2221 807 197 2238 117 0 13 chr4 18738321 18738630 -165550032 - AluSq SINE Alu -8 305 1 4809 132 76 35 chr4 18738630 18738836 -165549826 - Tigger3b DNA MER2_type -2831 197 1 2440 118 22 27 chr4 18738864 18739230 -165549432 + THE1B LTR MaLR 1 364 0 12011 95 21 3 chr4 18739230 18740781 -165547881 + THE1B-int LTR MaLR 1 1580 0 978 138 13 7 chr4 18740799 18740951 -165547711 + THE1B LTR MaLR 212 364 0 1318 278 74 15 chr4 18740951 18741490 -165547172 + L2 LINE L2 2731 3313 0 198 304 18 0 chr4 18741536 18741592 -165547070 - L2 LINE L2 0 3313 3257 316 202 31 10 chr4 18741818 18741915 -165546747 - MIR3 SINE MIR -22 186 86 545 317 49 32 chr4 18742682 18742928 -165545734 - MIR SINE MIR -10 252 3 276 246 92 0 chr4 18742928 18742984 -165545678 - L2 LINE L2 -42 3230 3169 2824 276 137 22 chr4 18743320 18744473 -165544189 - L2 LINE L2 -1771 1543 258 318 311 51 50 chr4 18744732 18744986 -165543676 + L2 LINE L2 2798 3053 -219 195 339 119 38 chr4 18745277 18745596 -165543066 + L2 LINE L2 2016 2360 -954 232 187 41 0 chr4 18745608 18745731 -165542931 + (TA)n Simple_repeat Simple_repeat 2 129 0 318 250 21 21 chr4 18745755 18745851 -165542811 + L1MC4 LINE L1 6610 6705 -1337 283 336 259 21 chr4 18746011 18746386 -165542276 + L2 LINE L2 2807 3270 -2 1531 140 19 30 chr4 18746397 18746661 -165542001 - Tigger2 DNA MER2_type -10 2708 2448 38 22 0 0 chr4 18746690 18746735 -165541927 + AT_rich Low_complexity Low_complexity 1 45 0 4571 125 24 36 chr4 18746741 18747508 -165541154 - Tigger2 DNA MER2_type -1961 757 1 2637 50 0 0 chr4 18747989 18748289 -165540373 + AluY SINE Alu 1 300 -11 279 206 27 41 chr4 18748307 18748380 -165540282 - MIR SINE MIR -108 154 83 2153 101 7 0 chr4 18748685 18748972 -165539690 + AluSq SINE Alu 1 289 -24 26 30 0 0 chr4 18750518 18750551 -165538111 + AT_rich Low_complexity Low_complexity 1 33 0 186 43 0 0 chr4 18750902 18750925 -165537737 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 595 290 75 23 chr4 18750995 18751209 -165537453 + MIR SINE MIR 20 244 -18 413 167 0 12 chr4 18751258 18751342 -165537320 + CT-rich Low_complexity Low_complexity 4 86 0 426 195 0 0 chr4 18751345 18751427 -165537235 - Cheshire DNA MER1_type -266 2154 2073 287 136 99 0 chr4 18751402 18751483 -165537179 - Cheshire DNA MER1_type -2265 155 67 * 1609 180 19 60 chr4 18751490 18751736 -165536926 - MLT1A1 LTR MaLR -12 353 125 2771 98 20 3 chr4 18751736 18752092 -165536570 + THE1B LTR MaLR 3 364 0 1609 180 19 60 chr4 18752092 18752211 -165536451 - MLT1A1 LTR MaLR -240 125 3 424 74 0 0 chr4 18752231 18752285 -165536377 + MER57A LTR ERV1 1 54 -349 1917 123 57 92 chr4 18752285 18752674 -165535988 - THE1C LTR MaLR 0 375 1 1640 77 5 14 chr4 18752674 18752895 -165535767 - THE1C-int LTR MaLR 0 1580 1362 1022 198 80 0 chr4 18752909 18753146 -165535516 + Cheshire DNA MER1_type 130 2419 -1 1834 228 42 5 chr4 18754203 18754585 -165534077 - MSTD LTR MaLR 0 396 1 528 245 0 0 chr4 18754629 18755111 -165533551 + (CA)n Simple_repeat Simple_repeat 1 482 0 408 316 102 27 chr4 18755218 18755443 -165533219 - MIR SINE MIR -19 243 2 210 216 0 0 chr4 18755806 18755880 -165532782 + (CA)n Simple_repeat Simple_repeat 2 75 0 417 300 14 38 chr4 18756348 18756558 -165532104 + MIR SINE MIR 58 262 0 230 325 125 0 chr4 18756790 18756870 -165531792 - L2 LINE L2 -19 3253 3164 12955 179 7 10 chr4 18756870 18759959 -165528703 - L1P3 LINE L1 -2782 3679 582 14824 26 1 0 chr4 18759959 18762367 -165526295 + L1PA3 LINE L1 3746 6155 0 12955 179 7 10 chr4 18762367 18762946 -165525716 - L1P3 LINE L1 -5879 582 3 366 263 75 15 chr4 18762993 18763126 -165525536 + MIR SINE MIR 40 180 -82 295 334 33 25 chr4 18763401 18763566 -165525096 + MIR SINE MIR 19 180 -28 191 245 38 0 chr4 18764224 18764277 -165524385 + MIR SINE MIR 187 241 -21 371 213 43 150 chr4 18764748 18765002 -165523660 - L2 LINE L2 -6 3307 3081 1012 152 129 5 chr4 18765008 18765225 -165523437 - L1MC2 LINE L1 -2 6342 6099 244 0 0 0 chr4 18765234 18765261 -165523401 + (TTTTG)n Simple_repeat Simple_repeat 1 165 0 2266 82 0 4 chr4 18765261 18765540 -165523122 - AluSc SINE Alu -31 278 1 257 277 176 48 chr4 18765700 18765989 -165522673 + LTR16C LTR ERVL 151 476 -15 345 269 99 50 chr4 18765991 18766132 -165522530 + MIR SINE MIR 114 261 -1 411 309 22 29 chr4 18766189 18766328 -165522334 - MIR SINE MIR -65 197 60 266 279 58 39 chr4 18766389 18766493 -165522169 - MIR SINE MIR -71 137 32 607 209 43 139 chr4 18767389 18767647 -165521015 - MIR SINE MIR -19 243 11 253 286 42 67 chr4 18767651 18767770 -165520892 - MIR3 SINE MIR -23 185 70 213 284 23 0 chr4 18768140 18768228 -165520434 + (TG)n Simple_repeat Simple_repeat 2 91 0 247 397 116 29 chr4 18768689 18768931 -165519731 - L2 LINE L2 0 3272 3010 21 0 0 0 chr4 18770600 18770621 -165518041 + AT_rich Low_complexity Low_complexity 1 21 0 437 292 76 67 chr4 18770978 18771310 -165517352 + L1MEc LINE L1 1412 1801 -775 199 403 0 0 chr4 18772019 18772091 -165516571 + L2 LINE L2 3134 3205 -67 211 291 51 13 chr4 18772288 18772367 -165516295 + L2 LINE L2 3176 3257 -56 221 297 102 47 chr4 18774532 18774660 -165514002 - L2 LINE L2 -1 3271 3137 287 381 114 19 chr4 18774897 18775275 -165513387 - L2 LINE L2 -650 2664 2251 298 276 13 0 chr4 18775318 18775394 -165513268 - LTR16C LTR ERVL -222 269 193 233 242 30 61 chr4 18775602 18775668 -165512994 - L2 LINE L2 0 3272 3209 2035 120 10 29 chr4 18776466 18776774 -165511888 + AluSx SINE Alu 1 302 -10 201 269 260 39 chr4 18776885 18776989 -165511673 + MIR SINE MIR 9 135 -127 355 353 53 38 chr4 18777054 18777394 -165511268 + L2 LINE L2 1550 1894 -1420 470 261 36 26 chr4 18778292 18778487 -165510175 - HAL1 LINE L1 -78 2429 2233 324 179 0 0 chr4 18778540 18778607 -165510055 - MER116 DNA Mariner 0 80 14 32 43 0 0 chr4 18778742 18778788 -165509874 + AT_rich Low_complexity Low_complexity 1 46 0 2239 130 11 0 chr4 18778788 18779141 -165509521 - L1PB4 LINE L1 -7 6852 6496 198 0 0 0 chr4 18779141 18779163 -165509499 + (TG)n Simple_repeat Simple_repeat 2 23 0 207 204 0 0 chr4 18779236 18779280 -165509382 + (CATA)n Simple_repeat Simple_repeat 3 46 0 7445 217 27 90 chr4 18779282 18781053 -165507609 - L1PB4 LINE L1 -367 6492 4611 397 57 0 0 chr4 18781053 18781106 -165507556 - MADE1 DNA Mariner 0 80 28 7445 217 27 90 chr4 18781106 18781281 -165507381 - L1PB4 LINE L1 -2248 4611 4427 369 94 0 47 chr4 18781281 18781345 -165507317 - MADE1 DNA Mariner -17 63 3 7445 217 27 90 chr4 18781345 18783183 -165505479 - L1PB4 LINE L1 -2432 4427 2848 253 266 110 0 chr4 18783253 18783362 -165505300 - L1PB4 LINE L1 -4004 2845 2725 687 254 106 72 chr4 18783399 18783751 -165504911 - L1PB4 LINE L1 -525 2685 2311 1748 217 43 71 chr4 18783751 18784285 -165504377 - MLT2B1 LTR ERVL 0 520 2 687 254 106 72 chr4 18784285 18784404 -165504258 - L1PB4 LINE L1 -899 2311 2198 342 354 186 7 chr4 18784414 18785001 -165503661 - L1PB4 LINE L1 -1706 1504 813 1751 210 36 20 chr4 18785007 18785397 -165503265 + MSTD LTR MaLR 1 396 0 5467 243 87 34 chr4 18785399 18787046 -165501616 + MSTD-int LTR MaLR 2 1735 0 1145 199 120 38 chr4 18787048 18787236 -165501426 + MSTD LTR MaLR 4 226 -170 1931 150 0 43 chr4 18787236 18787562 -165501100 - AluSx SINE Alu 0 312 1 1145 199 120 38 chr4 18787562 18787664 -165500998 + MSTD LTR MaLR 226 318 -78 242 256 70 0 chr4 18787665 18787751 -165500911 - L1PB4 LINE L1 -2403 807 716 24 32 0 0 chr4 18788137 18788168 -165500494 + AT_rich Low_complexity Low_complexity 1 31 0 662 308 79 31 chr4 18788422 18788902 -165499760 - MLT1J LTR MaLR -8 503 1 41 48 0 0 chr4 18789512 18789574 -165499088 + AT_rich Low_complexity Low_complexity 1 62 0 513 266 118 20 chr4 18789699 18789996 -165498666 - LTR16A LTR ERVL -6 444 119 437 289 53 11 chr4 18790387 18790558 -165498104 + MIR SINE MIR 19 205 -3 195 301 55 0 chr4 18791748 18791821 -165496841 - L2 LINE L2 0 3313 3237 1143 273 101 67 chr4 18792117 18792682 -165495980 - MER45C DNA AcHobo -369 584 1 226 339 120 16 chr4 18793107 18793290 -165495372 + L2 LINE L2 2170 2371 -943 190 175 50 0 chr4 18793384 18793424 -165495238 - L2 LINE L2 -10 3262 3221 500 236 9 155 chr4 18793460 18793711 -165494951 - MIR SINE MIR -19 243 31 1882 135 162 5 chr4 18794065 18794435 -165494227 + MSTA LTR MaLR 1 428 0 333 262 98 11 chr4 18795363 18795546 -165493116 + MLT1K LTR MaLR 376 574 -14 1901 162 0 16 chr4 18795556 18795864 -165492798 + AluJb SINE Alu 1 303 -9 259 151 41 27 chr4 18796321 18796394 -165492268 - L1PA16 LINE L1 0 6166 6093 2080 142 30 38 chr4 18796512 18796879 -165491783 + THE1B LTR MaLR 1 364 0 446 150 0 0 chr4 18797148 18797228 -165491434 - MADE1 DNA Mariner 0 80 1 553 211 0 0 chr4 18797977 18798072 -165490590 - FLAM_A SINE Alu -20 122 28 2592 116 52 10 chr4 18798143 18798550 -165490112 + MSTA LTR MaLR 5 428 0 268 277 75 50 chr4 18798684 18798701 -165489961 + MIR SINE MIR 59 74 -188 1671 236 20 0 chr4 18798701 18799057 -165489605 + MLT1A1 LTR MaLR 3 365 0 268 277 75 50 chr4 18799057 18799198 -165489464 + MIR SINE MIR 74 221 -41 1551 220 96 25 chr4 18799210 18799646 -165489016 - MLT1C LTR MaLR 0 467 1 294 73 0 0 chr4 18800861 18800902 -165487760 + (CA)n Simple_repeat Simple_repeat 1 41 0 428 302 48 8 chr4 18801111 18801237 -165487425 + L3 LINE CR1 1361 1491 -86 21 0 0 0 chr4 18801239 18801260 -165487402 + AT_rich Low_complexity Low_complexity 1 21 0 5492 113 5 2 chr4 18801260 18802131 -165486531 - L1PB1 LINE L1 -2 6149 5277 203 380 38 0 chr4 18802148 18802227 -165486435 - L2 LINE L2 -4 3268 3187 324 291 96 94 chr4 18802798 18803234 -165485428 - MLT1J2 LTR MaLR -13 437 1 561 327 5 53 chr4 18804513 18804525 -165484137 + MIR3 SINE MIR 5 16 -192 2822 201 7 7 chr4 18804525 18805083 -165483579 + MER74A LTR ERVL 1 558 0 561 327 5 53 chr4 18805083 18805278 -165483384 + MIR3 SINE MIR 16 202 -6 387 283 43 0 chr4 18805335 18805427 -165483235 - L2 LINE L2 -9 3263 3168 1082 164 23 9 chr4 18807442 18807656 -165481006 - Tigger1 DNA MER2_type 0 2418 2202 683 189 0 16 chr4 18807652 18807779 -165480883 - Tigger1 DNA MER2_type -2267 151 27 * 864 206 11 16 chr4 18808177 18808361 -165480301 + MER5A DNA MER1_type 3 185 -4 491 322 149 32 chr4 18808790 18809395 -165479267 - L2 LINE L2 -77 3236 2565 799 155 0 63 chr4 18809812 18809954 -165478708 - FLAM_C SINE Alu 0 133 1 1835 152 46 30 chr4 18810183 18810552 -165478110 + THE1C LTR MaLR 1 375 0 6297 133 9 41 chr4 18810552 18811685 -165476977 + THE1C-int LTR MaLR 1 1097 -483 1097 160 176 46 chr4 18811692 18811998 -165476664 + THE1B LTR MaLR 15 360 -4 232 121 69 52 chr4 18812010 18812068 -165476594 + L1ME1 LINE L1 6092 6150 -16 1076 288 199 18 chr4 18812200 18812864 -165475798 - L2 LINE L2 -1496 1818 1035 1360 195 66 31 chr4 18812900 18813249 -165475413 + MLT1A2 LTR MaLR 1 361 -13 767 308 63 61 chr4 18813263 18813688 -165474974 + L2 LINE L2 2888 3313 0 233 284 34 23 chr4 18814712 18814800 -165473862 - L2 LINE L2 -5 3267 3179 208 357 9 45 chr4 18815146 18815258 -165473404 + MIR SINE MIR 37 144 -64 744 221 6 18 chr4 18816383 18816546 -165472116 + MIR SINE MIR 74 234 -28 2156 97 0 0 chr4 18816596 18816863 -165471799 + AluSx SINE Alu 38 304 -8 649 260 85 0 chr4 18817401 18817578 -165471084 + MIR SINE MIR 71 262 0 38 68 0 0 chr4 18817581 18817654 -165471008 + AT_rich Low_complexity Low_complexity 1 73 0 2455 44 30 0 chr4 18818040 18818335 -165470327 + AluY SINE Alu 1 304 -7 3132 135 18 71 chr4 18818950 18819429 -165469233 - L1MB7 LINE L1 0 6184 5748 2512 68 0 3 chr4 18819429 18819739 -165468923 - AluY SINE Alu -2 309 1 3132 135 18 71 chr4 18819739 18819918 -165468744 - L1MB7 LINE L1 -436 5748 5561 194 311 48 99 chr4 18819967 18820151 -165468511 - L2 LINE L2 -829 2485 2320 1977 175 7 0 chr4 18820151 18820460 -165468202 - AluSx SINE Alu -1 311 1 194 311 48 99 chr4 18820460 18820568 -165468094 - L2 LINE L2 -994 2320 2208 359 265 0 31 chr4 18821004 18821102 -165467560 + L2 LINE L2 3213 3307 -6 2506 60 3 0 chr4 18821197 18821499 -165467163 + AluY SINE Alu 1 303 -8 390 232 36 0 chr4 18821636 18821748 -165466914 + MER103 DNA DNA 8 123 -43 245 233 0 0 chr4 18821797 18821840 -165466822 + (CGTG)n Simple_repeat Simple_repeat 1 43 0 218 326 109 14 chr4 18822776 18822914 -165465748 + MIR SINE MIR 103 253 -9 263 164 73 0 chr4 18823178 18823233 -165465429 - MLT1K LTR MaLR 0 588 530 2159 137 0 0 chr4 18823249 18823562 -165465100 + AluSq SINE Alu 1 313 0 368 322 15 49 chr4 18823678 18823883 -165464779 - MLT1K LTR MaLR -166 422 225 316 333 164 12 chr4 18824285 18824450 -165464212 - MIR3 SINE MIR 0 208 19 239 298 60 71 chr4 18826005 18826173 -165462489 + MIR SINE MIR 19 184 -78 645 236 111 10 chr4 18826203 18826411 -165462251 + MIR SINE MIR 21 249 -13 4280 248 62 41 chr4 18827461 18830893 -165457769 + L1MA9 LINE L1 357 3436 -2598 225 236 18 0 chr4 18830894 18830949 -165457713 + (TA)n Simple_repeat Simple_repeat 1 56 0 314 290 0 21 chr4 18830949 18831042 -165457620 + L1MC4 LINE L1 6613 6703 -1339 432 279 0 0 chr4 18831049 18831221 -165457441 + (TA)n Simple_repeat Simple_repeat 1 172 0 245 315 0 11 chr4 18831224 18831402 -165457260 + (TATG)n Simple_repeat Simple_repeat 2 177 0 241 318 0 0 chr4 18831409 18831475 -165457187 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 321 309 0 0 chr4 18831481 18831656 -165457006 + (TA)n Simple_repeat Simple_repeat 2 176 0 7661 183 32 23 chr4 18831680 18833998 -165454664 + L1MA9 LINE L1 3467 5796 -404 1064 293 77 9 chr4 18833998 18834677 -165453985 - L2 LINE L2 -22 3291 2560 296 324 163 76 chr4 18834685 18835017 -165453645 + L3 LINE CR1 589 891 -686 2286 114 0 0 chr4 18835017 18835324 -165453338 + AluSx SINE Alu 1 307 -5 296 324 163 76 chr4 18835324 18835581 -165453081 + L3 LINE CR1 891 1229 -348 352 68 0 108 chr4 18835622 18835696 -165452966 + MER41B LTR ERV1 482 547 -88 365 333 86 20 chr4 18835707 18835905 -165452757 + L3 LINE CR1 1266 1476 -101 197 362 29 0 chr4 18838275 18838344 -165450318 + L2 LINE L2 3201 3271 -1 480 301 54 46 chr4 18839770 18840009 -165448653 + MIR SINE MIR 22 262 0 320 295 36 72 chr4 18840002 18840141 -165448521 - MIR SINE MIR -108 154 21 * 2129 127 7 0 chr4 18840945 18841245 -165447417 + AluSq SINE Alu 1 302 -11 255 61 0 0 chr4 18841845 18841878 -165446784 + (TC)n Simple_repeat Simple_repeat 2 34 0 252 184 0 118 chr4 18841881 18841957 -165446705 - U6 snRNA snRNA -3 104 38 419 174 0 0 chr4 18841961 18842030 -165446632 - U6 snRNA snRNA -37 70 2 710 328 36 4 chr4 18842209 18842462 -165446200 - MIR SINE MIR -1 261 1 3218 190 36 88 chr4 18842733 18844105 -165444557 - L1ME2 LINE L1 -11 6153 4843 352 199 55 75 chr4 18844154 18844300 -165444362 - L1ME2 LINE L1 -2290 3856 3714 185 323 21 43 chr4 18844791 18844884 -165443778 + L3 LINE CR1 1473 1563 -14 409 376 41 5 chr4 18845353 18845547 -165443115 - MIR3 SINE MIR -4 204 4 1009 285 36 18 chr4 18845885 18845968 -165442694 - LTR16C LTR ERVL -7 484 404 1114 181 123 77 chr4 18845968 18846317 -165442345 - MLT1A1 LTR MaLR 0 365 1 1009 285 36 18 chr4 18846317 18846566 -165442096 - LTR16C LTR ERVL -87 404 146 201 154 0 0 chr4 18847030 18847069 -165441593 + (TTTAA)n Simple_repeat Simple_repeat 4 42 0 201 270 114 93 chr4 18847278 18847515 -165441147 + MIR3 SINE MIR 2 243 -19 188 277 0 0 chr4 18847516 18847563 -165441099 - L2 LINE L2 -4 3268 3222 464 286 107 40 chr4 18847975 18848328 -165440334 + LTR16A1 LTR ERVL 73 457 0 537 259 0 44 chr4 18848466 18848624 -165440038 - L2 LINE L2 0 3313 3163 2586 100 5 19 chr4 18848806 18849175 -165439487 + THE1B LTR MaLR 1 364 0 884 246 120 22 chr4 18849226 18849379 -165439283 - MLT1F1 LTR MaLR 0 567 430 207 69 0 0 chr4 18849379 18849408 -165439254 + (CTGGGG)n Simple_repeat Simple_repeat 4 32 0 884 246 120 22 chr4 18849408 18849611 -165439051 - MLT1F1 LTR MaLR -137 430 176 273 128 0 0 chr4 18849611 18849658 -165439004 + (GGGAA)n Simple_repeat Simple_repeat 4 50 0 326 296 53 13 chr4 18849684 18849836 -165438826 - MLT1F1 LTR MaLR -435 158 1 257 300 71 41 chr4 18850386 18850556 -165438106 - MIR SINE MIR -65 197 23 24 32 0 0 chr4 18850766 18850797 -165437865 + AT_rich Low_complexity Low_complexity 1 31 0 289 235 224 39 chr4 18850828 18851083 -165437579 - L1MC4a LINE L1 -1872 5936 5635 534 267 47 47 chr4 18851084 18851275 -165437387 - MIR SINE MIR -41 221 31 395 311 133 8 chr4 18851306 18851570 -165437092 - L1MC4a LINE L1 -2161 5647 5351 584 300 83 14 chr4 18851822 18851907 -165436755 - L1ME3A LINE L1 -339 5831 5753 2194 120 0 0 chr4 18851907 18852208 -165436454 - AluSc SINE Alu -8 301 1 584 300 83 14 chr4 18852208 18852412 -165436250 - L1ME3A LINE L1 -417 5753 5522 366 203 248 8 chr4 18852419 18852552 -165436110 - L1ME3A LINE L1 -802 5344 5180 1119 289 90 16 chr4 18852554 18853052 -165435610 + L2 LINE L2 2149 2683 -631 1807 127 51 6 chr4 18853152 18853483 -165435179 + MER6 DNA MER2_type 520 865 0 2097 123 13 0 chr4 18854313 18854615 -165434047 + AluSx SINE Alu 1 306 -6 708 263 27 0 chr4 18854698 18854884 -165433778 + L2 LINE L2 2179 2369 -945 548 207 7 47 chr4 18855154 18855304 -165433358 - AluJb SINE Alu -4 308 165 606 167 0 0 chr4 18855419 18855509 -165433153 + AluSg/x SINE Alu 159 248 -62 1083 148 46 65 chr4 18855509 18855725 -165432937 + AluSq SINE Alu 85 296 -17 1404 107 30 17 chr4 18855725 18855959 -165432703 + MSTA LTR MaLR 192 428 0 634 301 92 4 chr4 18856034 18856273 -165432389 - MIR SINE MIR 0 262 3 1761 132 0 12 chr4 18856461 18856718 -165431944 + AluSg SINE Alu 1 254 -56 319 226 63 51 chr4 18856818 18857087 -165431575 + L1MC4 LINE L1 7660 8042 0 303 224 0 0 chr4 18857553 18857629 -165431033 + MER116 DNA Mariner 1 76 -4 421 291 152 0 chr4 18857641 18857792 -165430870 - L3 LINE CR1 -75 1502 1329 5359 148 43 49 chr4 18857926 18859174 -165429488 - L1M4c LINE L1 -4563 1821 581 476 137 0 0 chr4 18859286 18859359 -165429303 + MER66B LTR ERV1 414 486 0 808 311 33 0 chr4 18859381 18859625 -165429037 + MER82 DNA MER2_type 402 653 0 2328 113 0 3 chr4 18859751 18860062 -165428600 + AluSg SINE Alu 1 310 0 327 241 25 0 chr4 18860114 18860193 -165428469 - 5S rRNA rRNA -37 84 4 384 281 103 34 chr4 18860285 18860634 -165428028 - L1ME3 LINE L1 -201 5961 5589 1068 106 0 0 chr4 18860696 18860828 -165427834 + AluSg1 SINE Alu 1 132 -177 202 297 81 0 chr4 18861653 18861727 -165426935 + MIR SINE MIR 66 145 -117 180 282 239 0 chr4 18862749 18862820 -165425842 + L2 LINE L2 3175 3262 -10 270 312 48 40 chr4 18864578 18864703 -165423959 - MIR SINE MIR -117 145 20 682 191 51 25 chr4 18865045 18865172 -165423490 + LTR32 LTR ERVL 15 145 -326 2331 81 14 11 chr4 18865172 18865520 -165423142 + MER4B LTR ERV1 1 349 -261 1881 142 24 48 chr4 18865732 18866105 -165422557 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr4 18868332 18868353 -165420309 + AT_rich Low_complexity Low_complexity 1 21 0 206 263 50 25 chr4 18870153 18870233 -165418429 - MIR SINE MIR -99 163 82 991 260 91 23 chr4 18870483 18870994 -165417668 + MER90 LTR ERV1 27 570 -5 793 230 180 7 chr4 18871474 18871752 -165416910 + L1ME3A LINE L1 5840 6165 -5 1483 112 95 78 chr4 18872079 18872373 -165416289 - AluSx SINE Alu -12 300 2 415 359 54 23 chr4 18873096 18873355 -165415307 + L1MEd LINE L1 587 853 -5266 399 332 37 0 chr4 18873433 18873647 -165415015 + L1M4 LINE L1 3353 3574 -2572 1148 45 0 0 chr4 18873657 18873789 -165414873 + AluY SINE Alu 1 132 -179 2466 80 0 0 chr4 18873790 18874092 -165414570 + AluY SINE Alu 1 302 -9 189 293 80 13 chr4 18874308 18874383 -165414279 - MER5C DNA MER1_type -239 85 6 442 335 52 0 chr4 18874398 18874610 -165414052 + MIR SINE MIR 27 249 -13 408 40 0 0 chr4 18874687 18874737 -165413925 + (TG)n Simple_repeat Simple_repeat 1 50 0 661 289 110 54 chr4 18874878 18875307 -165413355 + L1MEd LINE L1 785 1237 -4882 2097 132 0 0 chr4 18875448 18875729 -165412933 + AluSq SINE Alu 13 293 -20 1911 103 58 58 chr4 18876520 18876646 -165412016 + AluSx SINE Alu 1 126 -186 225 94 0 0 chr4 18876646 18876678 -165411984 + (CAAA)n Simple_repeat Simple_repeat 4 35 0 1911 103 58 58 chr4 18876678 18876862 -165411800 + AluSx SINE Alu 125 311 -1 492 145 0 60 chr4 18877292 18877375 -165411287 + FRAM SINE Alu 69 146 -30 687 293 29 37 chr4 18877422 18877668 -165410994 - MIR SINE MIR -17 245 2 504 326 39 6 chr4 18877691 18877869 -165410793 + L3 LINE CR1 627 810 -767 1154 188 39 0 chr4 18877885 18878093 -165410569 - MER20 DNA MER1_type -3 216 1 212 211 58 0 chr4 18878201 18878253 -165410409 + L3 LINE CR1 791 845 -732 986 150 20 15 chr4 18878295 18878495 -165410167 + MSTB LTR MaLR 1 201 -225 315 115 33 16 chr4 18878495 18878556 -165410106 + AluS SINE Alu 1 62 -246 1963 173 0 3 chr4 18878733 18879046 -165409616 + AluJb SINE Alu 1 312 0 387 268 226 24 chr4 18879331 18879499 -165409163 - L1M4 LINE L1 -2261 3885 3684 1364 283 54 16 chr4 18879630 18880075 -165408587 + LTR16B LTR ERVL 3 464 0 1959 103 4 21 chr4 18880115 18880396 -165408266 + AluSc SINE Alu 1 276 -33 217 281 4 16 chr4 18880892 18880964 -165407698 + MIR SINE MIR 68 140 -68 2355 99 0 0 chr4 18881016 18881320 -165407342 + AluSp SINE Alu 1 304 -9 1834 175 5 72 chr4 18882008 18882426 -165406236 + MLT1B LTR MaLR 1 390 0 230 355 136 24 chr4 18882532 18882773 -165405889 - L2 LINE L2 -256 3057 2801 243 357 64 35 chr4 18883193 18883364 -165405298 + L2 LINE L2 2992 3167 -105 1660 246 53 9 chr4 18883453 18883983 -165404679 + L1ME1 LINE L1 5623 6159 -7 3109 100 9 0 chr4 18885179 18885609 -165403053 + MER57B LTR ERV1 1 434 0 430 267 55 89 chr4 18885629 18885831 -165402831 - MIR3 SINE MIR -10 198 4 2591 136 106 12 chr4 18886596 18887088 -165401574 - L1PA16 LINE L1 -6 6160 5623 1671 129 4 0 chr4 18887088 18887367 -165401295 + L1PA16 LINE L1 5318 5597 -569 1983 52 0 16 chr4 18887387 18887637 -165401025 - L1PA7 LINE L1 -8 6146 5901 1498 54 0 5 chr4 18887737 18887941 -165400721 - L1PA7 LINE L1 -230 5924 5722 421 318 33 47 chr4 18888542 18888603 -165400059 - L2 LINE L2 -556 2758 2698 1725 178 0 32 chr4 18888603 18888918 -165399744 + AluJo SINE Alu 1 305 -7 421 318 33 47 chr4 18888918 18889067 -165399595 - L2 LINE L2 -616 2698 2551 200 318 16 0 chr4 18889975 18890038 -165398624 + MIR SINE MIR 79 142 -120 274 336 8 67 chr4 18890212 18890346 -165398316 + MIR SINE MIR 20 145 -63 11044 204 36 30 chr4 18890703 18895139 -165393523 - L1MA9 LINE L1 -10 6538 2055 449 283 45 30 chr4 18895658 18895915 -165392747 - L1MA9 LINE L1 -5716 597 267 1933 126 73 22 chr4 18896044 18896401 -165392261 + THE1C LTR MaLR 1 375 0 2286 94 0 0 chr4 18896485 18896783 -165391879 + AluSg1 SINE Alu 1 298 -11 203 0 37 0 chr4 18896786 18896813 -165391849 + (TAA)n Simple_repeat Simple_repeat 2 29 0 209 239 30 30 chr4 18896873 18896940 -165391722 - L2 LINE L2 -5 3267 3201 716 282 5 5 chr4 18897672 18897860 -165390802 - MIR SINE MIR -71 191 4 202 354 90 45 chr4 18897932 18898110 -165390552 - L2 LINE L2 -16 3256 3071 217 364 91 0 chr4 18898126 18898236 -165390426 - MIR SINE MIR -64 144 25 228 384 30 8 chr4 18898278 18898411 -165390251 + MIR3 SINE MIR 73 208 0 795 267 58 30 chr4 18898994 18899425 -165389237 + MLT1C LTR MaLR 16 467 0 396 194 42 42 chr4 18899919 18900058 -165388604 - MLT1J1 LTR MaLR -265 246 69 638 226 0 0 chr4 18900238 18900371 -165388291 + FLAM_C SINE Alu 1 133 -10 2496 57 0 0 chr4 18900448 18900744 -165387918 + AluY SINE Alu 1 296 -15 305 305 138 12 chr4 18901056 18901223 -165387439 - MIR SINE MIR -24 238 51 200 289 60 36 chr4 18903012 18903095 -165385567 + L2 LINE L2 3183 3267 -5 221 119 24 0 chr4 18904787 18904829 -165383833 + (TA)n Simple_repeat Simple_repeat 1 43 0 307 313 87 26 chr4 18905963 18906078 -165382584 - L2 LINE L2 0 3272 3151 26 0 0 0 chr4 18906491 18906517 -165382145 + AT_rich Low_complexity Low_complexity 1 26 0 189 301 36 0 chr4 18907081 18907164 -165381498 + L2 LINE L2 2929 3014 -258 1787 171 121 16 chr4 18907326 18907713 -165380949 - MSTA LTR MaLR 0 428 1 5531 113 10 2 chr4 18907745 18908625 -165380037 - L1PA13 LINE L1 0 6163 5277 212 244 0 0 chr4 18909631 18909676 -165378986 + GA-rich Low_complexity Low_complexity 5 49 0 274 364 70 7 chr4 18909759 18909902 -165378760 - MIR SINE MIR -12 250 99 811 292 117 3 chr4 18910164 18910541 -165378121 + LTR33A LTR ERVL 104 523 0 433 248 62 16 chr4 18911032 18911161 -165377501 - L2 LINE L2 -1 3271 3137 206 356 11 22 chr4 18911576 18911666 -165376996 + MIR SINE MIR 17 105 -157 23 33 0 0 chr4 18911958 18911988 -165376674 + AT_rich Low_complexity Low_complexity 1 30 0 289 183 33 0 chr4 18912823 18912883 -165375779 + MLT1K LTR MaLR 5 66 -522 2198 192 42 65 chr4 18913335 18913902 -165374760 + MLT2B3 LTR ERVL 1 554 0 303 301 55 97 chr4 18914467 18914756 -165373906 - L2 LINE L2 -4 3268 2992 2257 115 0 6 chr4 18914853 18915165 -165373497 + AluSx SINE Alu 1 310 -2 340 235 62 0 chr4 18915175 18915256 -165373406 - MIR SINE MIR -75 187 102 1762 102 4 0 chr4 18915339 18915588 -165373074 + AluSq SINE Alu 58 307 0 21 0 0 0 chr4 18916062 18916083 -165372579 + AT_rich Low_complexity Low_complexity 1 21 0 1233 0 0 0 chr4 18916446 18916581 -165372081 + AluYb8 SINE Alu 179 313 -5 231 240 90 50 chr4 19116784 19116884 -165171778 + MIR SINE MIR 146 249 -13 224 77 26 0 chr4 19116900 19116939 -165171723 + (TA)n Simple_repeat Simple_repeat 2 41 0 319 243 81 36 chr4 19116963 19117074 -165171588 + L2 LINE L2 3194 3309 -4 266 167 17 0 chr4 19117270 19117330 -165171332 + CT-rich Low_complexity Low_complexity 1 61 0 1612 187 14 14 chr4 19117336 19117625 -165171037 - AluJo SINE Alu -23 289 1 290 217 75 57 chr4 19118028 19118134 -165170528 + L2 LINE L2 3140 3247 -25 2434 90 0 0 chr4 19118149 19118448 -165170214 + AluSq SINE Alu 1 299 -14 399 127 0 0 chr4 19118909 19118972 -165169690 + (CA)n Simple_repeat Simple_repeat 1 63 0 1224 137 24 5 chr4 19120912 19121117 -165167545 + AluSg/x SINE Alu 97 305 -5 185 262 155 24 chr4 19121630 19121714 -165166948 - L2 LINE L2 -18 3295 3201 189 245 0 0 chr4 19122426 19122475 -165166187 + GA-rich Low_complexity Low_complexity 4 52 0 306 299 149 31 chr4 19122989 19123183 -165165479 - L2 LINE L2 0 3313 3097 338 285 76 13 chr4 19123288 19123446 -165165216 + MIR SINE MIR 84 251 -11 357 254 82 82 chr4 19124694 19124774 -165163888 - L2 LINE L2 -174 3139 3060 2048 141 0 3 chr4 19124774 19125080 -165163582 + AluSx SINE Alu 1 305 -7 357 254 82 82 chr4 19125080 19125219 -165163443 - L2 LINE L2 -252 3061 2920 206 258 0 76 chr4 19125277 19125343 -165163319 - L2 LINE L2 -377 2936 2876 297 235 167 0 chr4 19125591 19125693 -165162969 - L2 LINE L2 -5 3267 3149 2438 75 0 7 chr4 19125798 19126103 -165162559 + AluY SINE Alu 1 303 -8 429 297 29 35 chr4 19126156 19126330 -165162332 - MIR SINE MIR -63 145 7 261 309 62 0 chr4 19126902 19126983 -165161679 - MIR SINE MIR -118 144 59 494 278 139 19 chr4 19127330 19127539 -165161123 + MIR SINE MIR 11 244 -18 40 0 0 0 chr4 19128732 19128772 -165159890 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr4 19128826 19128849 -165159813 + AT_rich Low_complexity Low_complexity 1 23 0 209 216 0 0 chr4 19129370 19129407 -165159255 + (TATATG)n Simple_repeat Simple_repeat 6 42 0 814 258 50 21 chr4 19130205 19130445 -165158217 - MIR SINE MIR -2 260 14 447 323 8 0 chr4 19130507 19130637 -165158025 + MER94 DNA DNA 3 133 -1 458 252 16 63 chr4 19130754 19130881 -165157781 - L2 LINE L2 -6 3266 3146 228 204 0 0 chr4 19130950 19131004 -165157658 - LTR66 LTR ERVL -159 451 398 * 232 143 0 0 chr4 19130972 19131014 -165157648 + LTR66 LTR ERVL 398 439 -171 2545 56 0 0 chr4 19131257 19131563 -165157099 - AluY SINE Alu -5 306 1 222 91 0 0 chr4 19131805 19131838 -165156824 + (TG)n Simple_repeat Simple_repeat 2 34 0 1608 203 33 15 chr4 19132781 19133111 -165155551 - MLT1A2 LTR MaLR -38 336 1 546 198 97 123 chr4 19133143 19133370 -165155292 - MIR SINE MIR -32 230 10 392 256 44 19 chr4 19134752 19134912 -165153750 - MER103 DNA DNA -2 164 1 552 214 18 18 chr4 19136399 19136511 -165152151 - MER81 DNA DNA -2 112 1 185 245 41 0 chr4 19136545 19136594 -165152068 + L2 LINE L2 3165 3215 -98 1554 170 89 0 chr4 19136630 19136901 -165151761 - AluJb SINE Alu -17 295 1 204 361 49 16 chr4 19137119 19137241 -165151421 - MIR3 SINE MIR -78 130 5 425 188 0 0 chr4 19138071 19138156 -165150506 + L1MA7 LINE L1 6207 6291 0 265 329 0 0 chr4 19138363 19138445 -165150217 + MIR SINE MIR 95 176 -86 771 271 54 55 chr4 19138772 19139143 -165149519 - MLT1J LTR MaLR -54 457 53 193 295 63 32 chr4 19140092 19140187 -165148475 + L2 LINE L2 3181 3278 -35 4752 36 2 16 chr4 19140220 19140830 -165147832 - L1PA4 LINE L1 0 6155 5606 472 191 124 0 chr4 19142389 19142494 -165146168 + MIR SINE MIR 95 212 -50 282 314 88 24 chr4 19142790 19142921 -165145741 - MIR SINE MIR -45 163 25 186 195 39 0 chr4 19143086 19143163 -165145499 + (TTA)n Simple_repeat Simple_repeat 2 81 0 330 230 14 2 chr4 19143375 19143461 -165145201 + MER5A DNA MER1_type 36 131 -57 272 242 0 22 chr4 19145897 19145988 -165142674 + GA-rich Low_complexity Low_complexity 4 92 0 2244 81 3 3 chr4 19147349 19147633 -165141029 - AluY SINE Alu -14 297 14 599 297 15 25 chr4 19147633 19147835 -165140827 + MIR SINE MIR 50 249 -13 552 30 0 0 chr4 19148162 19148228 -165140434 + LTR10D LTR ERV1 2 67 -446 270 300 0 114 chr4 19148624 19148764 -165139898 - MIR SINE MIR -119 143 20 224 256 182 58 chr4 19149369 19149611 -165139051 - L2 LINE L2 -17 3296 3025 356 206 167 10 chr4 19149838 19149940 -165138722 + L2 LINE L2 3191 3308 -5 1209 137 0 0 chr4 19150086 19150261 -165138401 + AluSq SINE Alu 130 304 -9 244 265 60 43 chr4 19150681 19150798 -165137864 - L2 LINE L2 0 3313 3195 181 208 181 0 chr4 19152640 19152712 -165135950 - MIR SINE MIR -38 224 140 286 213 74 65 chr4 19152755 19152863 -165135799 + MIR SINE MIR 15 123 -139 902 94 77 65 chr4 19153501 19153671 -165134991 + MER7A DNA MER2_type 42 211 -135 257 266 168 21 chr4 19153947 19154090 -165134572 + MIR3 SINE MIR 24 187 -21 219 319 107 30 chr4 19155229 19155398 -165133264 + MIR SINE MIR 31 212 -50 2195 116 0 7 chr4 19155425 19155727 -165132935 - AluSq SINE Alu -13 300 1 25 31 0 0 chr4 19155854 19155886 -165132776 + AT_rich Low_complexity Low_complexity 1 32 0 1068 210 40 13 chr4 19156945 19157169 -165131493 + MLT1F1 LTR MaLR 338 567 0 501 263 193 29 chr4 19157169 19157442 -165131220 - MLT1L LTR MaLR -90 525 208 436 256 0 0 chr4 19158365 19158447 -165130215 - MER7A DNA MER2_type -266 82 1 2073 121 7 0 chr4 19159133 19159422 -165129240 + AluSx SINE Alu 1 291 -21 341 270 34 11 chr4 19159700 19159789 -165128873 + L2 LINE L2 2631 2721 -593 1161 123 0 0 chr4 19159789 19159944 -165128718 + FRAM SINE Alu 1 153 -23 405 341 122 33 chr4 19159958 19160478 -165128184 + L2 LINE L2 2714 3269 -44 313 319 64 11 chr4 19160646 19160740 -165127922 + MIR SINE MIR 52 150 -58 2160 141 0 0 chr4 19161215 19161527 -165127135 - AluSx SINE Alu 0 312 1 476 271 96 27 chr4 19161993 19162181 -165126481 + MIR SINE MIR 47 247 -15 241 301 14 0 chr4 19162230 19162303 -165126359 + MIR3 SINE MIR 106 179 -29 26 30 0 0 chr4 19162918 19162951 -165125711 + AT_rich Low_complexity Low_complexity 1 33 0 199 171 0 0 chr4 19164455 19164490 -165124172 + MIR SINE MIR 222 256 -6 331 234 39 94 chr4 19165924 19166052 -165122610 - L2 LINE L2 0 3313 3193 468 100 14 14 chr4 19166408 19166478 -165122184 + AluSp SINE Alu 91 160 -153 210 209 58 35 chr4 19166793 19166879 -165121783 + (CCCCG)n Simple_repeat Simple_repeat 2 89 0 217 232 0 42 chr4 19167108 19167203 -165121459 + (CCCCG)n Simple_repeat Simple_repeat 2 92 0 362 347 40 17 chr4 19169458 19169631 -165119031 - MIR3 SINE MIR -2 206 30 2443 77 3 29 chr4 19169695 19170008 -165118654 - AluSq SINE Alu -8 305 1 1762 208 9 9 chr4 19170339 19170680 -165117982 - MER58B DNA MER1_type 0 341 1 457 322 158 27 chr4 19171207 19171542 -165117120 - L3 LINE CR1 -116 1461 1083 310 253 0 71 chr4 19172294 19172393 -165116269 + MIR SINE MIR 106 197 -65 715 260 87 17 chr4 19172450 19172681 -165115981 - MIR SINE MIR -4 258 12 522 302 116 9 chr4 19174977 19175202 -165113460 - MIR SINE MIR -13 249 1 817 214 71 0 chr4 19175261 19175457 -165113205 + MER20 DNA MER1_type 10 219 0 212 139 0 23 chr4 19175637 19175680 -165112982 + (GAA)n Simple_repeat Simple_repeat 1 42 0 315 0 0 0 chr4 19176552 19176587 -165112075 + (CA)n Simple_repeat Simple_repeat 1 35 0 1613 152 42 4 chr4 19176986 19177249 -165111413 + AluJb SINE Alu 19 291 -21 25 0 0 0 chr4 19177255 19177280 -165111382 + AT_rich Low_complexity Low_complexity 1 25 0 190 204 183 75 chr4 19177562 19177655 -165111007 - MER5A DNA MER1_type -43 146 44 217 190 52 69 chr4 19177590 19177648 -165111014 + MER5B DNA MER1_type 72 128 -50 1951 122 80 0 chr4 19177986 19178273 -165110389 - AluSx SINE Alu -2 310 1 280 222 56 0 chr4 19178328 19178418 -165110244 - L1ME LINE L1 -254 5867 5773 1285 136 50 3 chr4 19178888 19179186 -165109476 - MER84 LTR ERVI 0 507 113 507 304 140 27 chr4 19179332 19179625 -165109037 - L3 LINE CR1 -693 884 559 524 294 71 47 chr4 19179639 19179850 -165108812 - MIR SINE MIR 0 262 47 253 327 167 18 chr4 19179895 19180063 -165108599 - L3 LINE CR1 -981 596 404 310 223 8 92 chr4 19180818 19180948 -165107714 - MER113 DNA MER1_type? -402 119 1 23 0 0 0 chr4 19181274 19181297 -165107365 + AT_rich Low_complexity Low_complexity 1 23 0 1241 238 120 26 chr4 19181388 19181854 -165106808 - MLT1H LTR MaLR -22 527 18 232 318 0 0 chr4 19181881 19181952 -165106710 + MIR SINE MIR 70 141 -67 4944 185 34 11 chr4 19182054 19182189 -165106473 + L1MC3 LINE L1 6721 6852 -933 402 69 0 0 chr4 19182189 19182247 -165106415 + (CA)n Simple_repeat Simple_repeat 1 58 0 4944 185 34 11 chr4 19182247 19183153 -165105509 + L1MC3 LINE L1 6852 7785 0 1605 147 124 0 chr4 19183169 19183434 -165105228 + AluSx SINE Alu 2 299 -3 385 296 94 25 chr4 19184285 19184444 -165104218 - L3 LINE CR1 -1 1576 1407 965 236 44 0 chr4 19184474 19184703 -165103959 + L2 LINE L2 2829 3067 -246 1092 73 29 0 chr4 19184710 19184847 -165103815 + AluSc SINE Alu 1 141 -168 2156 112 11 0 chr4 19184948 19185234 -165103428 + AluSg SINE Alu 11 299 -11 440 182 159 0 chr4 19185239 19185327 -165103335 - FLAM_A SINE Alu -27 115 14 1936 174 0 3 chr4 19185467 19185772 -165102890 + AluSx SINE Alu 5 308 -4 2197 100 17 0 chr4 19185775 19186074 -165102588 + AluSp SINE Alu 1 304 -9 2179 106 34 3 chr4 19186340 19186632 -165102030 - AluSq SINE Alu -12 301 1 2125 88 29 0 chr4 19189376 19189650 -165099012 + AluSx SINE Alu 9 290 -22 432 246 27 0 chr4 19190605 19190715 -165097947 - HAL1 LINE L1 -741 1766 1654 1289 138 0 0 chr4 19190790 19190979 -165097683 - AluSp SINE Alu -4 309 121 329 312 35 52 chr4 19190980 19191153 -165097509 - L1M4 LINE L1 -852 5294 5125 394 155 30 21 chr4 19191154 19191255 -165097407 + LTR24B LTR ERV1 3 104 -361 291 65 0 0 chr4 19191253 19191299 -165097363 - Alu SINE Alu 0 302 257 * 2011 123 10 7 chr4 19191600 19191901 -165096761 + AluSx SINE Alu 3 304 -8 2233 119 3 3 chr4 19192068 19192371 -165096291 - AluSq SINE Alu -10 303 1 2396 110 0 0 chr4 19192950 19193258 -165095404 - AluSx SINE Alu -4 308 1 198 161 0 0 chr4 19193740 19193771 -165094891 - L2 LINE L2 -16 3256 3226 310 194 0 14 chr4 19195942 19196014 -165092648 - LTR24B LTR ERV1 -502 74 4 1826 172 0 25 chr4 19196136 19196455 -165092207 - AluJb SINE Alu -1 311 1 187 207 103 35 chr4 19196662 19196720 -165091942 - L2 LINE L2 -8 3264 3203 1864 169 33 0 chr4 19196735 19197036 -165091626 - AluJo SINE Alu -1 311 1 2019 112 19 0 chr4 19197137 19197224 -165091438 + AluSx SINE Alu 40 124 -188 306 0 0 0 chr4 19197224 19197258 -165091404 + (CAA)n Simple_repeat Simple_repeat 3 36 0 2019 112 19 0 chr4 19197258 19197437 -165091225 + AluSx SINE Alu 124 311 -1 277 315 74 28 chr4 19197775 19197883 -165090779 + MIR SINE MIR 21 133 -129 552 211 158 0 chr4 19197943 19198057 -165090605 + MER45A DNA AcHobo 3 134 -44 339 330 10 0 chr4 19198174 19198277 -165090385 - L1M4 LINE L1 -1860 4286 4183 2165 110 33 3 chr4 19198283 19198583 -165090079 - AluSx SINE Alu -3 309 1 811 125 0 0 chr4 19198600 19198720 -165089942 + MER84 LTR ERVI 2 121 -386 242 170 0 0 chr4 19198841 19198888 -165089774 + L1MB4 LINE L1 6134 6180 0 1978 102 27 0 chr4 19199110 19199366 -165089296 - AluSg SINE Alu -14 296 34 260 292 45 0 chr4 19200540 19200629 -165088033 + L1ME1 LINE L1 6034 6126 -40 655 115 250 27 chr4 19200633 19200781 -165087881 - AluSx SINE Alu -25 287 107 598 233 24 14 chr4 19201034 19201196 -165087466 + MIR SINE MIR 35 205 -57 2275 120 10 0 chr4 19202499 19202807 -165085855 - AluSx SINE Alu -1 311 1 2369 103 7 0 chr4 19202812 19203122 -165085540 - AluSq SINE Alu -1 312 1 870 108 15 15 chr4 19204258 19204388 -165084274 - AluSx SINE Alu -183 130 1 1869 132 44 0 chr4 19204478 19204751 -165083911 + AluJb SINE Alu 12 296 -16 2218 105 0 0 chr4 19206844 19207129 -165081533 + AluSx SINE Alu 1 285 -27 266 233 12 0 chr4 19207130 19207216 -165081446 + (TA)n Simple_repeat Simple_repeat 2 88 0 333 0 0 0 chr4 19208533 19208570 -165080092 + (TTA)n Simple_repeat Simple_repeat 2 38 0 2240 107 10 23 chr4 19209174 19209484 -165079178 - AluSx SINE Alu -6 306 1 527 242 98 58 chr4 19209549 19209737 -165078925 - L1MC4 LINE L1 -5 8037 7833 2396 88 0 0 chr4 19209737 19210032 -165078630 - AluSg SINE Alu -15 295 1 527 242 98 58 chr4 19210032 19210120 -165078542 - L1MC4 LINE L1 -209 7833 7750 207 266 138 21 chr4 19210182 19210276 -165078386 + MIR SINE MIR 20 124 -84 2371 76 7 0 chr4 19210394 19210695 -165077967 - AluSp SINE Alu -10 303 1 1640 137 29 46 chr4 19210695 19211023 -165077639 - AluSq SINE Alu 0 313 1 1545 214 10 3 chr4 19211029 19211350 -165077312 - AluJo SINE Alu 0 323 1 274 262 78 19 chr4 19211914 19212017 -165076645 - MIR SINE MIR -78 130 22 376 328 0 23 chr4 19212678 19212806 -165075856 + MIR SINE MIR 27 151 -111 363 131 16 0 chr4 19212822 19212882 -165075780 + MLT2C1 LTR ERVL 11 71 -393 314 73 0 0 chr4 19212882 19212923 -165075739 + Alu SINE Alu 1 41 -267 1578 106 22 13 chr4 19212923 19213181 -165075481 + AluSg/x SINE Alu 74 312 0 1579 192 34 3 chr4 19213182 19213505 -165075157 + MLT2C1 LTR ERVL 64 396 -1 208 240 80 40 chr4 19213604 19213679 -165074983 - MIR SINE MIR -69 139 62 1745 154 50 0 chr4 19214263 19214543 -165074119 - AluJb SINE Alu -18 294 1 323 260 143 17 chr4 19214812 19214988 -165073674 - L1MC4a LINE L1 -360 5810 5691 1633 116 0 13 chr4 19215034 19215259 -165073403 + AluSg/x SINE Alu 86 307 -5 1368 78 0 47 chr4 19215282 19215473 -165073189 - AluY SINE Alu -16 295 114 1331 164 9 0 chr4 19215573 19215792 -165072870 + Tigger3(Golem) DNA MER2_type 2808 3028 -1 1846 135 52 12 chr4 19215801 19216126 -165072536 - MER47A DNA MER2_type 0 366 29 2255 123 16 0 chr4 19216127 19216435 -165072227 + AluSq SINE Alu 1 313 0 259 167 0 0 chr4 19216457 19216499 -165072163 - MER47A DNA MER2_type -324 42 1 1713 159 5 101 chr4 19216499 19216624 -165072038 + L1MC4 LINE L1 6695 6830 -1212 1776 173 6 28 chr4 19216624 19216942 -165071720 + AluJo SINE Alu 1 311 -1 1713 159 5 101 chr4 19216942 19217230 -165071432 + L1MC4 LINE L1 6830 7068 -974 201 346 71 9 chr4 19217720 19217835 -165070827 + MIR SINE MIR 44 163 -63 2140 128 3 3 chr4 19217889 19218195 -165070467 + AluSx SINE Alu 5 310 -2 228 35 0 0 chr4 19219116 19219145 -165069517 + (CAGGG)n Simple_repeat Simple_repeat 1 29 0 608 299 143 30 chr4 19219204 19219638 -165069024 + L2 LINE L2 2826 3308 -5 1449 154 5 9 chr4 19219700 19219921 -165068741 + AluSx SINE Alu 1 220 -92 1976 146 3 23 chr4 19223471 19223773 -165064889 - AluSx SINE Alu -10 302 7 1858 152 45 0 chr4 19223781 19224071 -165064591 - AluJb SINE Alu -9 303 1 334 326 23 8 chr4 19229134 19229266 -165059396 - L2 LINE L2 -6 3307 3174 200 238 0 0 chr4 19229433 19229475 -165059187 - MIR SINE MIR -110 152 111 346 289 19 0 chr4 19230360 19230464 -165058198 + L2 LINE L2 3207 3312 -1 216 214 0 0 chr4 19230522 19230578 -165058084 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 1865 72 0 0 chr4 19231053 19231275 -165057387 + AluY SINE Alu 90 311 0 2216 104 4 0 chr4 19232586 19232984 -165055678 + AluSx SINE Alu 1 399 0 225 0 0 0 chr4 19233905 19233930 -165054732 + (TAAAAA)n Simple_repeat Simple_repeat 2 26 0 280 267 23 17 chr4 19234184 19234360 -165054302 + GA-rich Low_complexity Low_complexity 2 178 0 242 319 187 0 chr4 19234452 19234543 -165054119 - MIR SINE MIR -63 145 38 181 229 292 0 chr4 19234609 19234705 -165053957 - MER5A DNA MER1_type -24 165 42 317 269 67 17 chr4 19235194 19235313 -165053349 - MIR SINE MIR -68 140 16 2160 104 40 0 chr4 19235353 19235651 -165053011 + AluSx SINE Alu 1 310 -2 206 261 54 65 chr4 19235655 19235747 -165052915 - MIR SINE MIR -86 176 86 191 261 22 0 chr4 19236362 19236408 -165052254 - MIR SINE MIR 0 262 216 2179 125 20 0 chr4 19238726 19239029 -165049633 - AluSx SINE Alu -3 309 1 1520 112 62 4 chr4 19239081 19239341 -165049321 - L1MB3 LINE L1 -9 6174 5900 1708 133 8 0 chr4 19239369 19239610 -165049052 + AluSx SINE Alu 1 243 -69 1667 182 13 26 chr4 19240290 19240592 -165048070 + AluJo SINE Alu 5 302 -10 2159 127 0 0 chr4 19240884 19241192 -165047470 + AluSx SINE Alu 1 308 0 2121 149 0 0 chr4 19242075 19242377 -165046285 + AluSx SINE Alu 1 302 -10 1733 175 13 26 chr4 19242913 19243216 -165045446 + AluJo SINE Alu 1 299 -13 2359 86 6 13 chr4 19245639 19245818 -165042844 - AluY SINE Alu 0 311 133 2580 70 0 0 chr4 19245818 19246119 -165042543 - AluY SINE Alu -10 301 1 2359 86 6 13 chr4 19246119 19246252 -165042410 - AluY SINE Alu -178 133 1 2152 98 33 16 chr4 19246291 19246657 -165042005 - L1PA15 LINE L1 0 6165 5794 219 348 71 21 chr4 19247349 19247490 -165041172 + MIR SINE MIR 109 256 -6 498 241 40 14 chr4 19247526 19247691 -165040971 + MIR SINE MIR 34 206 -56 2505 85 0 0 chr4 19248018 19248323 -165040339 - AluY SINE Alu -6 305 1 1204 133 80 5 chr4 19248513 19248701 -165039961 - AluJb SINE Alu -15 297 96 408 194 0 0 chr4 19248801 19248883 -165039779 - AluS SINE Alu -237 64 1 194 336 55 55 chr4 19249270 19249378 -165039284 + MIR3 SINE MIR 40 150 -58 1856 141 14 27 chr4 19249378 19249675 -165038987 + AluJo SINE Alu 1 293 -19 194 336 55 55 chr4 19249675 19249694 -165038968 + MIR3 SINE MIR 149 167 -41 2143 119 33 6 chr4 19249697 19250034 -165038628 - MER7A DNA MER2_type -1 345 2 2434 93 3 3 chr4 19251404 19251716 -165036946 - AluSp SINE Alu -1 312 1 2557 151 44 13 chr4 19252344 19252869 -165035793 - L1MB7 LINE L1 0 6184 5644 827 218 18 0 chr4 19253249 19253414 -165035248 + FRAM SINE Alu 1 164 -12 302 342 18 0 chr4 19253574 19253685 -165034977 + L2 LINE L2 1154 1266 -2048 1696 141 7 19 chr4 19254843 19255113 -165033549 + AluJb SINE Alu 21 287 -25 2257 100 3 17 chr4 19255118 19255418 -165033244 + AluSx SINE Alu 1 296 -16 466 355 116 20 chr4 19255491 19255888 -165032774 + L2 LINE L2 2878 3312 -1 2371 112 0 3 chr4 19256527 19256840 -165031822 + AluSx SINE Alu 1 312 0 297 320 92 7 chr4 19257325 19257478 -165031184 - MIR SINE MIR -77 185 20 1843 133 51 17 chr4 19258610 19258903 -165029759 + AluJb SINE Alu 1 303 -9 1869 160 28 3 chr4 19258903 19259190 -165029472 + AluJb SINE Alu 1 294 -18 640 123 18 0 chr4 19259190 19259304 -165029358 + GA-rich Low_complexity Low_complexity 3 118 0 1836 84 63 0 chr4 19259610 19259849 -165028813 - AluY SINE Alu -57 254 1 855 178 11 52 chr4 19259910 19260084 -165028578 + AluJb SINE Alu 125 291 -21 2291 119 3 0 chr4 19260698 19261001 -165027661 - AluSx SINE Alu -7 305 2 2152 123 3 0 chr4 19261744 19262037 -165026625 - AluSx SINE Alu -18 294 1 842 212 17 6 chr4 19262239 19262418 -165026244 + MER5A DNA MER1_type 3 183 -6 3621 158 68 6 chr4 19262472 19263179 -165025483 - L1MB7 LINE L1 -16 6168 5418 2285 102 23 0 chr4 19263729 19264034 -165024628 - AluSp SINE Alu -1 312 1 2386 89 7 0 chr4 19264532 19264835 -165023827 - AluSq SINE Alu -8 305 1 223 282 35 12 chr4 19265945 19266030 -165022632 - MIR SINE MIR -99 163 77 245 310 28 0 chr4 19269134 19269205 -165019457 - MIR SINE MIR -124 138 66 2606 60 3 0 chr4 19269642 19269943 -165018719 + AluSp SINE Alu 1 302 -11 248 224 208 27 chr4 19270280 19270463 -165018199 - L1ME4a LINE L1 -101 6020 5805 266 342 0 0 chr4 19273281 19273357 -165015305 + MIR SINE MIR 47 122 -140 276 343 105 12 chr4 19273366 19273538 -165015124 + MIR SINE MIR 66 253 -9 578 305 135 17 chr4 19274134 19274615 -165014047 + L2 LINE L2 2738 3270 -2 195 129 0 0 chr4 19275325 19275356 -165013306 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 319 274 9 18 chr4 19275397 19275510 -165013152 + (CAGAGA)n Simple_repeat Simple_repeat 2 113 0 249 33 0 0 chr4 19277710 19277740 -165010922 + (CTCA)n Simple_repeat Simple_repeat 2 31 0 256 319 109 0 chr4 19277831 19277969 -165010693 + L2 LINE L2 722 874 -2440 827 285 135 92 chr4 19278465 19279725 -165008937 + L2 LINE L2 1940 3263 -50 230 335 86 29 chr4 19279738 19279947 -165008715 + MLT1L LTR MaLR 6 226 -389 634 70 0 0 chr4 19279980 19280066 -165008596 + AluJ/FRAM SINE Alu 221 306 -6 943 218 47 8 chr4 19280069 19280311 -165008351 + LTR16A1 LTR ERVL 207 457 0 414 57 0 0 chr4 19280591 19280644 -165008018 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 2093 119 0 0 chr4 19280862 19281188 -165007474 + AluSx SINE Alu 1 326 0 1811 140 14 3 chr4 19281215 19281507 -165007155 + AluJo SINE Alu 1 295 -17 318 26 0 0 chr4 19281765 19281804 -165006858 + (CA)n Simple_repeat Simple_repeat 2 40 0 397 301 81 84 chr4 19281974 19282524 -165006138 + L1M3c LINE L1 1728 3899 -2949 2110 106 0 26 chr4 19282551 19282853 -165005809 - AluSx SINE Alu -18 294 1 421 270 123 19 chr4 19282855 19283066 -165005596 + HAL1b LINE L1 413 645 -703 610 333 81 59 chr4 19283109 19283188 -165005474 + L1M4c LINE L1 2053 2129 -4417 2093 130 0 0 chr4 19283188 19283487 -165005175 + AluSx SINE Alu 1 299 -13 610 333 81 59 chr4 19283487 19283503 -165005159 + L1M4c LINE L1 2129 2143 -4403 1770 174 3 10 chr4 19283503 19283814 -165004848 + AluJo SINE Alu 1 309 -3 610 333 81 59 chr4 19283814 19284261 -165004401 + L1M4c LINE L1 2143 2649 -3897 4182 194 13 20 chr4 19284279 19285023 -165003639 + L1P LINE L1 4263 5000 -1146 1775 177 0 10 chr4 19285023 19285328 -165003334 - AluJb SINE Alu -10 302 1 4182 194 13 20 chr4 19285328 19285580 -165003082 + L1P LINE L1 5000 5252 -894 226 296 11 23 chr4 19286531 19286619 -165002043 - L1M4b LINE L1 -6341 518 432 2269 94 7 0 chr4 19286767 19287075 -165001587 + AluSp SINE Alu 1 310 -3 953 283 123 29 chr4 19288066 19288799 -164999863 + L2 LINE L2 2500 3305 -8 1422 226 61 53 chr4 19289566 19290061 -164998601 + MLT1D LTR MaLR 1 418 -10 215 324 93 19 chr4 19291143 19291251 -164997411 + MIR SINE MIR 18 133 -75 206 239 0 15 chr4 19294058 19294125 -164994537 + (CA)n Simple_repeat Simple_repeat 1 66 0 2248 62 24 3 chr4 19294441 19294733 -164993929 + AluSp SINE Alu 2 299 -14 432 244 16 8 chr4 19295085 19295208 -164993454 + Charlie8 DNA MER1_type 46 169 -2248 2257 65 48 0 chr4 19295352 19295642 -164993020 + AluY SINE Alu 1 304 -7 2342 95 0 0 chr4 19297716 19298021 -164990641 + AluSq SINE Alu 1 305 -8 279 265 247 19 chr4 19298589 19298751 -164989911 + MIR SINE MIR 63 261 -1 21 36 0 0 chr4 19300854 19300882 -164987780 + GC_rich Low_complexity Low_complexity 1 28 0 2200 82 27 0 chr4 19301450 19301744 -164986918 - AluSp SINE Alu 0 313 12 262 208 13 26 chr4 19301760 19301837 -164986825 - L2 LINE L2 -301 2971 2896 387 276 24 0 chr4 19301932 19302059 -164986603 + MLT1K LTR MaLR 184 313 -275 323 279 253 13 chr4 19302626 19302780 -164985882 + L2 LINE L2 3123 3313 0 * 470 267 82 36 chr4 19302769 19302964 -164985698 - MIR SINE MIR -3 259 56 902 147 0 22 chr4 19302992 19303128 -164985534 + FLAM_C SINE Alu 1 133 0 1369 208 32 32 chr4 19303143 19303270 -164985392 + AluJo SINE Alu 1 127 -185 225 65 0 0 chr4 19303270 19303301 -164985361 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 1369 208 32 32 chr4 19303301 19303481 -164985181 + AluJo SINE Alu 126 308 -4 2411 181 47 74 chr4 19303599 19304233 -164984429 - LTR34 LTR ERV1 -4 695 79 240 146 0 6 chr4 19304292 19304348 -164984314 + Alu SINE Alu 1 37 -265 246 0 29 0 chr4 19304396 19304430 -164984232 + AluY SINE Alu 18 52 -250 596 327 16 65 chr4 19304566 19304887 -164983775 - L2 LINE L2 -1 3271 2967 239 222 0 0 chr4 19305597 19305642 -164983020 + L2 LINE L2 3269 3313 0 210 171 0 24 chr4 19305648 19305689 -164982973 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 203 273 36 0 chr4 19306931 19306986 -164981676 + MIR SINE MIR 81 137 -71 2277 93 3 7 chr4 19307949 19308259 -164980403 + AluSx SINE Alu 1 309 -3 429 203 203 0 chr4 19308425 19308553 -164980109 - MER5A DNA MER1_type -35 154 1 520 199 69 8 chr4 19308554 19308685 -164979977 + L2 LINE L2 2667 2805 -509 183 273 18 0 chr4 19309952 19310007 -164978655 - MIR SINE MIR -6 256 201 365 184 0 11 chr4 19310037 19310124 -164978538 + MLT1C LTR MaLR 34 119 -348 5216 69 24 22 chr4 19310124 19310381 -164978281 - L1P LINE L1 -1635 4511 4256 2278 72 3 3 chr4 19310381 19310674 -164977988 - AluY SINE Alu -14 297 5 5216 69 24 22 chr4 19310674 19311239 -164977423 - L1P LINE L1 -1890 4256 3687 1493 64 59 0 chr4 19311239 19311458 -164977204 + L1P3 LINE L1 5446 5677 -477 2068 137 0 19 chr4 19311458 19311595 -164977067 + AluSx SINE Alu 1 139 -173 2225 101 3 7 chr4 19311595 19311901 -164976761 + AluSp SINE Alu 1 305 -8 2068 137 0 19 chr4 19311901 19312078 -164976584 + AluSx SINE Alu 139 309 -3 817 225 67 10 chr4 19312080 19312289 -164976373 + MLT1C LTR MaLR 213 433 -34 407 277 54 8 chr4 19312318 19312448 -164976214 - MIR3 SINE MIR -62 146 11 2086 119 0 7 chr4 19313215 19313517 -164975145 - AluSx SINE Alu -12 300 1 843 124 31 0 chr4 19313816 19313945 -164974717 - FRAM SINE Alu -3 173 41 705 265 84 20 chr4 19314298 19314659 -164974003 + LTR16C LTR ERVL 61 491 0 414 328 0 6 chr4 19314710 19314890 -164973772 + (CA)n Simple_repeat Simple_repeat 1 179 0 674 298 113 16 chr4 19316216 19316595 -164972067 - L2 LINE L2 -4 3268 2853 298 269 77 0 chr4 19316787 19316891 -164971771 + MER5A DNA MER1_type 51 162 -27 1236 136 0 6 chr4 19317101 19317277 -164971385 + FAM SINE Alu 1 175 0 1841 138 36 13 chr4 19317340 19317456 -164971206 + AluSx SINE Alu 1 113 -199 219 36 0 0 chr4 19317456 19317484 -164971178 + (CAA)n Simple_repeat Simple_repeat 3 30 0 1841 138 36 13 chr4 19317484 19317672 -164970990 + AluSx SINE Alu 113 312 0 233 245 314 0 chr4 19317823 19317925 -164970737 + MIR SINE MIR 9 142 -120 227 256 58 58 chr4 19318285 19318350 -164970312 - MIR SINE MIR -79 129 62 1097 172 39 10 chr4 19318350 19318553 -164970109 - MER3 DNA MER1_type 0 209 1 436 261 7 12 chr4 19318562 19318690 -164969972 - MER5B DNA MER1_type 0 178 61 983 271 199 16 chr4 19319819 19320247 -164968415 - L2 LINE L2 0 3313 2808 355 363 39 11 chr4 19320322 19320504 -164968158 - MIR SINE MIR -68 194 8 2129 124 3 16 chr4 19320770 19321053 -164967609 + AluSq SINE Alu 1 283 -30 435 18 18 0 chr4 19321053 19321108 -164967554 + (TAA)n Simple_repeat Simple_repeat 2 180 0 2129 124 3 16 chr4 19321108 19321139 -164967523 + AluSq SINE Alu 283 313 0 2028 149 0 0 chr4 19321557 19321858 -164966804 - AluSx SINE Alu -11 301 1 1695 115 98 3 chr4 19321858 19322163 -164966499 - MER4B LTR ERV1 -245 365 32 2051 95 58 10 chr4 19322198 19322492 -164966170 - AluSc SINE Alu -1 308 1 2096 86 3 50 chr4 19322514 19322852 -164965810 - MER4B-int LTR ERV1 0 6758 6437 1597 118 0 0 chr4 19322852 19323072 -164965590 - AluSg/x SINE Alu -11 301 82 226 278 19 0 chr4 19323594 19323648 -164965014 + L2 LINE L2 3215 3269 -3 2114 89 20 0 chr4 19323842 19324135 -164964527 + AluSx SINE Alu 1 299 -13 411 236 62 87 chr4 19324943 19325218 -164963444 + L1MC4 LINE L1 7751 8018 -24 194 244 0 0 chr4 19325311 19325356 -164963306 - MIR SINE MIR -117 145 101 187 336 122 15 chr4 19325406 19325537 -164963125 - L2 LINE L2 -28 3244 3100 268 230 11 58 chr4 19325565 19325652 -164963010 + L2 LINE L2 2932 3014 -258 244 196 265 10 chr4 19328212 19328314 -164960348 + MIR SINE MIR 19 146 -62 190 320 200 16 chr4 19328602 19328727 -164959935 - MIR3 SINE MIR -20 188 41 1963 119 6 45 chr4 19329101 19329236 -164959426 + AluSx SINE Alu 1 140 -172 2336 71 0 0 chr4 19329236 19329542 -164959120 + AluY SINE Alu 1 306 0 1963 119 6 45 chr4 19329542 19329716 -164958946 + AluSx SINE Alu 140 299 -13 204 217 72 116 chr4 19329966 19330104 -164958558 - MIR SINE MIR -61 147 16 189 264 81 23 chr4 19330670 19330757 -164957905 + MIR SINE MIR 48 139 -69 275 276 20 61 chr4 19330833 19330931 -164957731 - MIR SINE MIR -113 149 56 427 176 15 0 chr4 19332180 19332248 -164956414 + AluJ/FLAM SINE Alu 1 69 -243 1516 160 11 25 chr4 19332249 19332524 -164956138 + AluJo SINE Alu 31 301 -11 412 216 39 20 chr4 19332543 19332645 -164956017 - MIR SINE MIR -56 206 103 378 320 81 42 chr4 19332653 19332912 -164955750 + L3 LINE CR1 1277 1545 -32 244 254 42 0 chr4 19333108 19333179 -164955483 - MER96 DNA MER1_type? -98 77 4 185 341 61 8 chr4 19333238 19333370 -164955292 + L2 LINE L2 2470 2608 -706 283 364 23 8 chr4 19333630 19333759 -164954903 + L2 LINE L2 3180 3310 -3 354 45 0 0 chr4 19334221 19334265 -164954397 + (CA)n Simple_repeat Simple_repeat 1 44 0 278 293 12 12 chr4 19334973 19335055 -164953607 - MIR SINE MIR -87 121 40 1232 314 169 18 chr4 19335453 19336408 -164952254 + L2 LINE L2 2208 3310 -3 206 299 0 52 chr4 19336781 19336878 -164951784 + L2 LINE L2 3179 3270 -2 209 295 86 19 chr4 19338195 19338300 -164950362 - MIR3 SINE MIR -34 174 63 1977 141 7 3 chr4 19339980 19340284 -164948378 - AluJo SINE Alu -7 305 1 2271 89 0 13 chr4 19340296 19340599 -164948063 - AluY SINE Alu -12 299 1 333 240 88 41 chr4 19341327 19341376 -164947286 + L1MC4 LINE L1 7864 7909 -133 405 0 0 0 chr4 19341376 19341421 -164947241 + (CA)n Simple_repeat Simple_repeat 2 46 0 333 240 88 41 chr4 19341421 19341542 -164947120 + L1MC4 LINE L1 7909 8042 0 270 222 10 50 chr4 19342229 19342328 -164946334 + CT-rich Low_complexity Low_complexity 4 98 0 328 329 0 13 chr4 19342915 19343070 -164945592 + C-rich Low_complexity Low_complexity 5 157 0 233 209 17 26 chr4 19343130 19343245 -164945417 + CT-rich Low_complexity Low_complexity 1 114 0 209 239 319 35 chr4 19345562 19345675 -164942987 - MIR3 SINE MIR -62 146 2 328 301 0 0 chr4 19346250 19346333 -164942329 + (CA)n Simple_repeat Simple_repeat 2 84 0 208 333 58 82 chr4 19346546 19346717 -164941945 + MIR3 SINE MIR 5 171 -37 266 244 37 12 chr4 19348194 19348276 -164940386 + L3 LINE CR1 1156 1239 -338 307 328 92 23 chr4 19352986 19353160 -164935502 + MIR3 SINE MIR 21 206 -2 609 128 84 84 chr4 19353536 19353678 -164934984 - MER53 DNA DNA -1 188 44 2221 77 11 0 chr4 19353678 19353965 -164934697 + AluSx SINE Alu 1 290 -22 609 128 84 84 chr4 19353965 19354001 -164934661 - MER53 DNA DNA -144 45 10 1539 147 13 40 chr4 19354569 19354869 -164933793 - AluSx SINE Alu -20 292 1 1648 143 66 0 chr4 19355358 19355644 -164933018 + AluJb SINE Alu 1 305 -7 1845 88 0 119 chr4 19355648 19355966 -164932696 - AluSg SINE Alu -12 298 19 467 277 13 26 chr4 19355987 19356142 -164932520 + LTR24B LTR ERV1 417 569 -7 990 135 0 14 chr4 19356159 19356307 -164932355 + AluSq/x SINE Alu 1 146 -167 1972 110 22 0 chr4 19356307 19356579 -164932083 + AluSx SINE Alu 1 278 -34 1201 115 50 25 chr4 19456582 19456782 -164831880 - MSTA LTR MaLR -223 205 1 22 35 0 0 chr4 19457161 19457190 -164831472 + AT_rich Low_complexity Low_complexity 1 29 0 184 315 19 0 chr4 19457252 19457306 -164831356 - L2 LINE L2 -89 3183 3129 2042 124 185 6 chr4 19457657 19458020 -164830642 + MSTA LTR MaLR 1 428 0 301 178 111 14 chr4 19458020 19458122 -164830540 - MLT1J LTR MaLR -320 126 1 339 229 0 0 chr4 19459020 19459103 -164829559 + Charlie2 DNA MER1_type 2711 2793 -69 419 276 43 0 chr4 19459737 19459853 -164828809 + MER5C DNA MER1_type 4 124 -200 215 273 0 0 chr4 19460410 19460465 -164828197 + CT-rich Low_complexity Low_complexity 3 57 0 291 336 6 0 chr4 19461634 19461777 -164826885 - MIR SINE MIR -62 146 47 446 308 90 14 chr4 19462140 19462351 -164826311 + L2 LINE L2 2723 2949 -365 677 257 11 6 chr4 19462365 19462548 -164826114 + MIR SINE MIR 76 259 -3 276 345 52 35 chr4 19462575 19462807 -164825855 + L2 LINE L2 2950 3185 -128 387 0 0 0 chr4 19462840 19462883 -164825779 + (T)n Simple_repeat Simple_repeat 1 43 0 289 327 2 9 chr4 19463860 19464001 -164824661 + MIR SINE MIR 4 143 -65 395 184 46 0 chr4 19464051 19464138 -164824524 - MIR SINE MIR -56 206 116 2404 130 60 34 chr4 19464154 19464672 -164823990 - MLT2A2 LTR ERVL 0 554 1 2960 165 65 41 chr4 19464725 19465314 -164823348 - LTR26 LTR ERV1 0 603 1 629 263 78 5 chr4 19467203 19467420 -164821242 - MIR SINE MIR -25 237 5 262 170 0 0 chr4 19467420 19467467 -164821195 + MIR SINE MIR 146 192 -70 575 48 0 12 chr4 19467572 19467656 -164821006 + (TTCC)n Simple_repeat Simple_repeat 1 83 0 262 96 19 19 chr4 19467725 19467777 -164820885 + (GGAA)n Simple_repeat Simple_repeat 1 52 0 245 288 56 16 chr4 19467778 19467903 -164820759 + LTR16C LTR ERVL 360 489 -2 228 254 0 48 chr4 19467903 19467966 -164820696 + CT-rich Low_complexity Low_complexity 4 63 0 240 255 0 0 chr4 19468303 19468354 -164820308 - L2 LINE L2 -19 3294 3244 471 78 0 0 chr4 19468418 19468482 -164820180 + (TA)n Simple_repeat Simple_repeat 1 64 0 281 244 26 0 chr4 19468498 19468576 -164820086 - MIR SINE MIR -105 157 78 421 298 53 8 chr4 19469616 19469747 -164818915 - L2 LINE L2 0 3272 3136 298 309 62 41 chr4 19469748 19469942 -164818720 + MLT1L LTR MaLR 3 200 -415 571 256 55 55 chr4 19470642 19470915 -164817747 + L2 LINE L2 3041 3313 0 5829 79 27 23 chr4 19471297 19472160 -164816502 + SVA Other Other 1 866 -520 10696 98 5 10 chr4 19472271 19474309 -164814353 - L1P LINE L1 -3528 2618 595 587 276 53 53 chr4 19474637 19475053 -164813609 + L1M4 LINE L1 3937 4352 -1794 1005 154 0 0 chr4 19475225 19475374 -164813288 + MSTA LTR MaLR 278 426 -2 318 290 205 30 chr4 19476004 19476408 -164812254 - L2 LINE L2 0 3313 2839 6650 45 20 0 chr4 19476630 19477439 -164811223 - L1PA5 LINE L1 -1 6153 5329 2594 47 3 3 chr4 19477435 19477773 -164810889 + L1PA5 LINE L1 4972 5309 -837 * 923 290 212 22 chr4 19477808 19478923 -164809739 - L2 LINE L2 -16 3297 1968 435 192 8 24 chr4 19478951 19479076 -164809586 + CT-rich Low_complexity Low_complexity 4 126 0 233 280 174 53 chr4 19480707 19480839 -164807823 + L2 LINE L2 2229 2376 -938 382 276 66 64 chr4 19480926 19481096 -164807566 + MIR SINE MIR 3 174 -69 28 0 0 0 chr4 19481130 19481158 -164807504 + AT_rich Low_complexity Low_complexity 1 28 0 1103 153 0 0 chr4 19481188 19481364 -164807298 - AluSg/x SINE Alu 0 312 137 320 347 108 36 chr4 19481591 19481868 -164806794 + L2 LINE L2 2974 3270 -2 1129 251 82 3 chr4 19482639 19482942 -164805720 + L2 LINE L2 2466 2792 -522 189 225 14 99 chr4 19482955 19483026 -164805636 - L2 LINE L2 -210 3062 2998 286 301 48 0 chr4 19483337 19483420 -164805242 + MIR SINE MIR 90 176 -86 2035 97 8 0 chr4 19483563 19483830 -164804832 - AluSx SINE Alu -43 269 1 186 189 0 0 chr4 19484015 19484052 -164804610 + GA-rich Low_complexity Low_complexity 1 37 0 202 225 0 0 chr4 19484875 19484915 -164803747 + L2 LINE L2 3254 3293 -20 320 188 0 12 chr4 19485810 19485890 -164802772 + (TA)n Simple_repeat Simple_repeat 2 80 0 25075 49 0 1 chr4 19486245 19489270 -164799392 + L1P LINE L1 4 3026 -3120 294 266 46 18 chr4 19490279 19490388 -164798274 - MIR SINE MIR -57 205 94 290 290 94 29 chr4 19490391 19490529 -164798133 - MIR SINE MIR -60 202 56 216 323 15 0 chr4 19490546 19490611 -164798051 + L2 LINE L2 3248 3313 0 475 274 18 9 chr4 19492489 19492602 -164796060 - MER81 DNA DNA 0 114 1 215 250 89 0 chr4 19492650 19492706 -164795956 + MIR SINE MIR 29 89 -173 191 109 174 22 chr4 19492794 19492840 -164795822 + MIR SINE MIR 132 184 -78 273 322 28 42 chr4 19493998 19494141 -164794521 - L1ME LINE L1 -561 5560 5420 388 219 94 78 chr4 19494874 19495002 -164793660 - L2 LINE L2 0 3313 3184 354 355 64 24 chr4 19495150 19495401 -164793261 - MIR SINE MIR 0 262 2 307 345 26 0 chr4 19496221 19496334 -164792328 + MIR3 SINE MIR 1 116 -92 208 0 62 0 chr4 19497872 19497904 -164790758 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 215 281 59 74 chr4 19498021 19498156 -164790506 + MIR3 SINE MIR 12 144 -64 207 114 0 0 chr4 19498182 19498217 -164790445 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 276 263 12 12 chr4 19498220 19498300 -164790362 - MIR SINE MIR -10 252 173 330 290 32 16 chr4 19498927 19499051 -164789611 + L2 LINE L2 2680 2805 -509 471 276 147 6 chr4 19499056 19499226 -164789436 - MER3 DNA MER1_type 0 209 16 444 281 186 74 chr4 19499238 19499576 -164789086 + L2 LINE L2 2897 3272 0 316 307 23 0 chr4 19500457 19500545 -164788117 + MIR SINE MIR 11 100 -162 2189 146 102 128 chr4 19500666 19501126 -164787536 + MER21B LTR ERV1 1 446 -417 1645 155 7 61 chr4 19501126 19501423 -164787239 - AluJo SINE Alu -30 282 2 2189 146 102 128 chr4 19501423 19501510 -164787152 + MER21B LTR ERV1 446 534 -329 2079 126 0 3 chr4 19501510 19501796 -164786866 - AluSx SINE Alu -27 285 1 1344 211 32 13 chr4 19502585 19502897 -164785765 + MER33 DNA MER1_type 3 320 -4 248 250 0 0 chr4 19503158 19503210 -164785452 - MIR SINE MIR -59 149 98 182 62 31 0 chr4 19503215 19503247 -164785415 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 20043 32 2 0 chr4 19503251 19506299 -164782363 - L1PA4 LINE L1 -3 6152 3108 642 292 26 26 chr4 19506444 19506670 -164781992 - LTR16B LTR ERVL -13 451 226 522 279 53 84 chr4 19506904 19507604 -164781058 + L1ME3A LINE L1 4670 5347 -799 1754 134 96 20 chr4 19507604 19507947 -164780715 + LTR24C LTR ERV1 242 610 -25 642 189 0 0 chr4 19507947 19508058 -164780604 + AluSg/x SINE Alu 198 308 -2 1454 231 35 66 chr4 19508103 19508619 -164780043 + Charlie2a DNA MER1_type 1586 2085 -777 5201 154 31 35 chr4 19508750 19509657 -164779005 - MER4D LTR ERV1 0 903 1 347 229 0 0 chr4 19509866 19509949 -164778713 + Charlie2 DNA MER1_type 2711 2793 -69 467 303 63 9 chr4 19510081 19510302 -164778360 + L1ME3A LINE L1 5730 5962 -208 24 32 0 0 chr4 19510485 19510516 -164778146 + AT_rich Low_complexity Low_complexity 1 31 0 417 113 70 0 chr4 19510529 19510600 -164778062 + MER50 LTR ERV1 1 76 -658 403 155 0 0 chr4 19510600 19510658 -164778004 - MER50-int LTR ERV1 -3808 3397 3340 629 219 0 9 chr4 19510658 19510772 -164777890 - MER50-int LTR ERV1 -4304 2901 2789 * 6609 134 46 21 chr4 19510769 19512489 -164776173 - MER50-int LTR ERV1 -5357 1848 7 941 149 39 0 chr4 19512489 19512643 -164776019 - MER50 LTR ERV1 -12 722 563 2357 149 31 0 chr4 19512648 19513038 -164775624 - MER50 LTR ERV1 -332 402 1 2508 191 21 12 chr4 19513573 19514054 -164774608 - MER31A LTR ERV1 0 485 1 2196 162 55 0 chr4 19514596 19514942 -164773720 + MLT1A1 LTR MaLR 1 365 0 274 250 52 21 chr4 19515112 19515208 -164773454 - MER103 DNA DNA -40 126 28 2255 82 4 0 chr4 19515382 19515663 -164772999 - AluY SINE Alu -29 282 1 231 299 75 0 chr4 19515990 19516057 -164772605 + MIR3 SINE MIR 126 197 -11 342 45 0 0 chr4 19516148 19516192 -164772470 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 191 245 0 41 chr4 19516270 19516319 -164772343 - L2 LINE L2 0 3272 3226 1265 214 31 0 chr4 19517015 19517244 -164771418 - MER8 DNA MER2_type 0 239 4 331 222 0 12 chr4 19517711 19517792 -164770870 - MER116 DNA Mariner 0 80 1 2152 68 0 0 chr4 19518056 19518319 -164770343 - AluY SINE Alu -11 300 38 354 138 0 0 chr4 19518419 19518477 -164770185 + (CA)n Simple_repeat Simple_repeat 2 59 0 1284 281 41 20 chr4 19518554 19519042 -164769620 - L1MC/D LINE L1 -2014 5794 5297 477 312 57 76 chr4 19519362 19519875 -164768787 - L1MC/D LINE L1 -1210 4936 4434 205 171 0 0 chr4 19519900 19519935 -164768727 + (CATATA)n Simple_repeat Simple_repeat 1 35 0 524 308 41 31 chr4 19520018 19520437 -164768225 - L1MC/D LINE L1 -1813 4333 3911 622 319 30 5 chr4 19520495 19520723 -164767939 - MIR SINE MIR 0 262 28 971 172 10 35 chr4 19521452 19521650 -164767012 - AluSg/x SINE Alu 0 310 118 2579 53 0 31 chr4 19522087 19522408 -164766254 + AluY SINE Alu 1 311 0 25 31 0 0 chr4 19522514 19522546 -164766116 + AT_rich Low_complexity Low_complexity 1 32 0 14746 30 3 1 chr4 19522617 19525400 -164763262 - L1PA3 LINE L1 -2 6153 3369 217 151 0 94 chr4 19525502 19525555 -164763107 - MIR SINE MIR -65 143 96 1554 272 126 68 chr4 19526322 19527537 -164761125 + HAL1 LINE L1 26 1310 -1197 1473 276 56 20 chr4 19527567 19527958 -164760704 + HAL1 LINE L1 1374 1791 -716 2734 133 38 21 chr4 19527958 19528379 -164760283 + MSTA LTR MaLR 1 428 0 1473 276 56 20 chr4 19528379 19528524 -164760138 + HAL1 LINE L1 1791 1929 -578 359 269 221 14 chr4 19528536 19528750 -164759912 + HAL1 LINE L1 1977 2145 -362 291 28 0 0 chr4 19528750 19528786 -164759876 + (TG)n Simple_repeat Simple_repeat 2 37 0 359 269 221 14 chr4 19528786 19528865 -164759797 + HAL1 LINE L1 2145 2331 -176 2521 145 8 0 chr4 19529776 19530148 -164758514 - THE1C LTR MaLR 0 375 1 993 173 152 20 chr4 19531083 19531280 -164757382 + MER58A DNA MER1_type 2 224 0 455 277 101 19 chr4 19531413 19531572 -164757090 - MER5A DNA MER1_type 0 189 7 568 323 69 5 chr4 19531581 19531798 -164756864 + MIR SINE MIR 20 250 -12 180 0 0 0 chr4 19531974 19531994 -164756668 + (T)n Simple_repeat Simple_repeat 1 20 0 4558 180 50 4 chr4 19532231 19533200 -164755462 - L1 LINE L1 -2557 3589 2577 2182 161 41 34 chr4 19533949 19534360 -164754302 + MLT2D LTR ERVL 1 414 0 543 230 58 92 chr4 19534384 19534645 -164754017 - L2 LINE L2 -5 3308 3057 1092 187 50 11 chr4 19534709 19535636 -164753026 - L1MD1 LINE L1 -2 6634 5673 624 50 0 0 chr4 19535637 19535717 -164752945 + (TA)n Simple_repeat Simple_repeat 2 81 0 548 311 26 21 chr4 19535822 19536015 -164752647 + LTR16C LTR ERVL 297 490 -1 10369 30 0 1 chr4 19536073 19538010 -164750652 + L1PA3 LINE L1 4219 6155 0 22 0 0 0 chr4 19538010 19538032 -164750630 + AT_rich Low_complexity Low_complexity 1 22 0 2247 239 42 8 chr4 19538185 19538835 -164749827 - L1MD1 LINE L1 -1131 5409 4738 417 201 0 125 chr4 19538836 19538980 -164749682 - L1MD1 LINE L1 -1944 4596 4471 2980 244 128 38 chr4 19538987 19539856 -164748806 - L1MD1 LINE L1 -5576 964 18 635 316 15 5 chr4 19540271 19540477 -164748185 + MIR SINE MIR 45 252 -10 1028 264 77 22 chr4 19540691 19541092 -164747570 - MLT1J LTR MaLR -20 491 69 352 267 36 67 chr4 19541380 19541423 -164747239 + MIR SINE MIR 75 118 -144 1002 209 62 24 chr4 19541423 19541634 -164747028 + MER20 DNA MER1_type 1 219 0 352 267 36 67 chr4 19541634 19541755 -164746907 + MIR SINE MIR 118 234 -28 3709 154 16 6 chr4 19541851 19542474 -164746188 - L1PA16 LINE L1 -14 6152 5524 354 304 55 28 chr4 19542569 19542750 -164745912 - MIR SINE MIR -56 206 21 2152 88 3 59 chr4 19542807 19543137 -164745525 + AluSq SINE Alu 1 313 0 1858 210 25 52 chr4 19543353 19543829 -164744833 - MLT1C LTR MaLR 0 467 5 23 0 0 0 chr4 19544125 19544148 -164744514 + AT_rich Low_complexity Low_complexity 1 23 0 186 103 0 0 chr4 19544782 19544811 -164743851 + (TG)n Simple_repeat Simple_repeat 2 30 0 314 289 126 0 chr4 19544917 19545052 -164743610 - MIR SINE MIR -4 258 107 199 347 10 20 chr4 19545270 19545368 -164743294 - MIR SINE MIR -163 99 3 2479 86 0 3 chr4 19545784 19546098 -164742564 + AluSq SINE Alu 1 313 0 2340 120 141 0 chr4 19547552 19547927 -164740735 - MSTA LTR MaLR 0 428 1 2544 182 66 26 chr4 19547932 19548432 -164740230 - MLT2B1 LTR ERVL 0 520 1 537 331 38 25 chr4 19548745 19549062 -164739600 + L1ME3A LINE L1 5625 5945 -225 2291 113 3 0 chr4 19549515 19549826 -164738836 - AluSx SINE Alu 0 312 1 253 246 16 0 chr4 19550014 19550075 -164738587 - L2 LINE L2 -8 3305 3244 1862 148 6 35 chr4 19551160 19551471 -164737191 - AluJo SINE Alu -10 302 1 337 167 0 17 chr4 19551474 19551534 -164737128 - MIR SINE MIR -98 164 106 187 31 62 0 chr4 19551547 19551579 -164737083 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 628 250 47 25 chr4 19551767 19551964 -164736698 - MIR SINE MIR -44 218 18 2423 80 3 0 chr4 19552060 19552359 -164736303 - AluSp SINE Alu -13 300 1 344 154 0 0 chr4 19552511 19552563 -164736099 - MER5B DNA MER1_type 0 178 127 3365 140 23 4 chr4 19552568 19553095 -164735567 + L1MC1 LINE L1 5779 6315 -18 715 182 16 0 chr4 19553150 19553271 -164735391 - MER5B DNA MER1_type -48 130 8 383 285 57 62 chr4 19553530 19553723 -164734939 + L2 LINE L2 2892 3083 -189 423 382 19 56 chr4 19554021 19554343 -164734319 + L2 LINE L2 2963 3272 0 240 159 23 0 chr4 19554340 19554384 -164734278 + MIR SINE MIR 218 262 0 * 26811 41 7 6 chr4 19555095 19558382 -164730280 + L1P LINE L1 4 3294 -2852 189 74 0 0 chr4 19558484 19558511 -164730151 + (TCCC)n Simple_repeat Simple_repeat 3 29 0 330 221 70 12 chr4 19559202 19559288 -164729374 - MIR SINE MIR -93 169 79 226 204 93 0 chr4 19560869 19560923 -164727739 - L2 LINE L2 -37 3276 3218 832 240 44 99 chr4 19561700 19562196 -164726466 + MLT1H LTR MaLR 79 547 -2 2875 146 12 32 chr4 19563209 19563703 -164724959 + MER31A LTR ERV1 1 484 -1 592 263 113 31 chr4 19564649 19564976 -164723686 + MLT1H LTR MaLR 183 536 -13 239 269 39 0 chr4 19565459 19565511 -164723151 + L2 LINE L2 3122 3175 -97 256 294 37 61 chr4 19565706 19565869 -164722793 - L3b LINE CR1 -134 1449 1291 601 270 60 75 chr4 19566081 19566333 -164722329 - MIR SINE MIR -12 250 3 217 294 228 11 chr4 19566445 19566537 -164722125 + MIR SINE MIR 38 149 -59 25 51 0 0 chr4 19566611 19566650 -164722012 + AT_rich Low_complexity Low_complexity 1 39 0 1699 214 28 21 chr4 19566806 19567193 -164721469 + MLT1B LTR MaLR 1 390 0 242 314 12 12 chr4 19567615 19567701 -164720961 + MIR3 SINE MIR 77 162 -46 487 250 70 17 chr4 19567740 19567912 -164720750 - Charlie8 DNA MER1_type -2144 273 93 6625 59 7 39 chr4 19568204 19569134 -164719528 - SVA Other Other -4 1382 483 192 217 0 0 chr4 19569296 19569342 -164719320 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 326 300 25 8 chr4 19569429 19569549 -164719113 - LTR16C LTR ERVL -2 489 368 198 167 0 0 chr4 19569570 19569606 -164719056 + (TA)n Simple_repeat Simple_repeat 2 37 0 252 164 60 30 chr4 19569613 19569680 -164718982 - MLT1H LTR MaLR -4 545 477 432 191 0 0 chr4 19569712 19569801 -164718861 + (TA)n Simple_repeat Simple_repeat 1 89 0 355 276 11 11 chr4 19570460 19570547 -164718115 + LTR67 LTR ERVL 45 131 -426 487 309 43 16 chr4 19570644 19570832 -164717830 + LTR67 LTR ERVL 277 469 -88 39 38 0 0 chr4 19570962 19571015 -164717647 + AT_rich Low_complexity Low_complexity 1 53 0 2284 118 0 0 chr4 19571047 19571351 -164717311 + AluSx SINE Alu 1 304 -8 271 198 49 37 chr4 19571405 19571486 -164717176 - MLT1H LTR MaLR -4 545 464 413 364 70 37 chr4 19571569 19572115 -164716547 + L2 LINE L2 2736 3310 -3 2027 169 64 6 chr4 19572492 19572835 -164715827 + MLT1A1 LTR MaLR 1 363 -2 377 279 45 45 chr4 19572901 19573055 -164715607 + MLT1L LTR MaLR 15 168 -447 343 286 153 17 chr4 19573071 19573312 -164715350 - L1ME4a LINE L1 -45 6076 5803 1849 218 92 5 chr4 19573358 19573784 -164714878 - MLT1C LTR MaLR 0 467 5 515 273 92 49 chr4 19573813 19574232 -164714430 - L1ME4a LINE L1 -386 5735 5291 2437 75 0 7 chr4 19574327 19574643 -164714019 - L1PA5 LINE L1 -6 6148 5836 28 71 0 0 chr4 19574928 19574984 -164713678 + AT_rich Low_complexity Low_complexity 1 56 0 * 613 301 122 25 chr4 19574945 19575536 -164713126 - L1ME4a LINE L1 -1120 5026 4374 22 35 0 0 chr4 19575672 19575701 -164712961 + AT_rich Low_complexity Low_complexity 1 29 0 425 269 20 60 chr4 19576330 19576479 -164712183 + MIR SINE MIR 27 169 -93 2578 46 0 7 chr4 19579263 19579568 -164709094 - AluY SINE Alu -8 303 1 1778 177 2 57 chr4 19579693 19579830 -164708832 - MLT1B LTR MaLR 0 390 247 1936 146 24 0 chr4 19579830 19580125 -164708537 - AluSx SINE Alu -1 311 10 1778 177 2 57 chr4 19580125 19580393 -164708269 - MLT1B LTR MaLR -143 247 7 407 202 242 24 chr4 19580449 19580573 -164708089 + MIR SINE MIR 111 261 -1 1903 135 66 0 chr4 19580643 19580932 -164707730 - AluSx SINE Alu -4 308 1 432 0 0 0 chr4 19581710 19581758 -164706904 + (CA)n Simple_repeat Simple_repeat 2 49 0 597 278 59 6 chr4 19581758 19581927 -164706735 + MIR SINE MIR 32 209 -53 1787 43 9 0 chr4 19581977 19582208 -164706454 - L1PA4 LINE L1 -184 5971 5739 797 21 0 0 chr4 19582208 19582295 -164706367 + L1PA4 LINE L1 6055 6147 -8 4416 145 27 10 chr4 19582665 19583453 -164705209 - Tigger1 DNA MER2_type 0 2418 1618 4599 158 40 4 chr4 19583553 19584380 -164704282 - Tigger1 DNA MER2_type -1561 857 1 482 144 27 9 chr4 19584852 19584963 -164703699 + CT-rich Low_complexity Low_complexity 4 116 0 1719 164 4 7 chr4 19584968 19585242 -164703420 - AluSx SINE Alu -38 274 2 3506 172 103 25 chr4 19585390 19586156 -164702506 - LTR1B LTR ERV1 0 826 1 3107 146 35 6 chr4 19586662 19587211 -164701451 - MER34B LTR ERV1 0 565 1 376 329 13 38 chr4 19587595 19587753 -164700909 + MIR SINE MIR 16 169 -93 24 32 0 0 chr4 19588058 19588089 -164700573 + AT_rich Low_complexity Low_complexity 1 31 0 276 345 101 22 chr4 19588111 19588250 -164700412 - L2 LINE L2 0 3272 3123 343 310 56 15 chr4 19589269 19589465 -164699197 + MIR SINE MIR 2 208 -54 2443 87 3 0 chr4 19589466 19589775 -164698887 + AluSp SINE Alu 1 310 -3 280 219 145 33 chr4 19590228 19590357 -164698305 - MIR SINE MIR -62 146 6 1099 185 5 0 chr4 19590660 19590844 -164697818 - MER5A DNA MER1_type -4 185 1 964 160 5 58 chr4 19590893 19591081 -164697581 + AluJb SINE Alu 120 297 -15 437 235 35 2 chr4 19591081 19591189 -164697473 + MER5B DNA MER1_type 55 176 -13 587 234 148 39 chr4 19591435 19591772 -164696890 + MER68 LTR ERV1 3 376 -186 3142 129 57 6 chr4 19591932 19592473 -164696189 + LTR24B LTR ERV1 1 569 -7 190 280 20 0 chr4 19592980 19593030 -164695632 + L3 LINE CR1 1524 1574 -3 2523 81 0 0 chr4 19593137 19593447 -164695215 + AluY SINE Alu 1 310 -1 266 333 102 0 chr4 19593483 19593591 -164695071 - MIR3 SINE MIR -54 154 36 205 237 203 0 chr4 19593673 19593732 -164694930 - MIR SINE MIR -16 246 176 324 267 23 0 chr4 19593860 19593946 -164694716 - MIR SINE MIR -3 259 172 323 267 84 46 chr4 19594240 19594371 -164694291 + MIR SINE MIR 29 164 -98 2059 136 33 41 chr4 19594706 19595095 -164693567 - MLT1B LTR MaLR -2 388 3 304 243 69 48 chr4 19595188 19595377 -164693285 + L1MC5 LINE L1 7331 7523 -438 736 279 21 21 chr4 19595575 19595815 -164692847 + L1MEc LINE L1 40 279 -6117 1681 102 8 0 chr4 19595918 19596154 -164692508 + THE1B LTR MaLR 127 364 0 687 278 75 18 chr4 19596307 19596534 -164692128 + MIR SINE MIR 21 260 -2 21 0 0 0 chr4 19596534 19596555 -164692107 + AT_rich Low_complexity Low_complexity 1 21 0 224 313 205 9 chr4 19596593 19596705 -164691957 - MIR SINE MIR -108 154 21 278 253 12 24 chr4 19596901 19596984 -164691678 - MER63 DNA MER1_type -5 1057 976 6370 98 6 9 chr4 19597139 19598125 -164690537 + L1PA11 LINE L1 5180 6162 -12 183 42 0 0 chr4 19598151 19598175 -164690487 + (GA)n Simple_repeat Simple_repeat 2 25 0 596 259 4 122 chr4 19598248 19598642 -164690020 + L1MC5 LINE L1 6672 7000 -961 1017 193 113 58 chr4 19598642 19598968 -164689694 - MER2 DNA MER2_type 0 344 1 596 259 4 122 chr4 19598968 19599055 -164689607 + L1MC5 LINE L1 7000 7096 -865 2776 269 34 44 chr4 19599256 19599352 -164689310 + L1MEc LINE L1 414 509 -5887 1489 118 45 0 chr4 19599352 19599572 -164689090 + MER30 DNA MER1_type 1 230 0 2776 269 34 44 chr4 19599572 19600819 -164687843 + L1MEc LINE L1 509 1743 -4653 5636 129 12 65 chr4 19600820 19601872 -164686790 + HSMAR2 DNA Mariner 305 1301 -1 609 158 105 0 chr4 19601878 19602011 -164686651 + L1MD1 LINE L1 6088 6234 -8 1553 234 69 28 chr4 19602012 19602854 -164685808 + L1MEc LINE L1 1850 2690 -3525 332 233 14 0 chr4 19602858 19602931 -164685731 - MIR SINE MIR -187 75 2 569 236 38 38 chr4 19604415 19604572 -164684090 + MIR SINE MIR 103 259 -3 449 211 28 0 chr4 19604647 19604756 -164683906 - LTR67 LTR ERVL 0 557 446 469 279 25 12 chr4 19604883 19605044 -164683618 - LTR67 LTR ERVL -306 251 89 197 260 169 0 chr4 19605079 19605156 -164683506 - L2 LINE L2 -86 3186 3097 266 351 55 30 chr4 19605619 19605821 -164682841 - L2 LINE L2 -179 3093 2887 304 273 76 82 chr4 19606117 19606458 -164682204 + MLT1J LTR MaLR 28 366 -145 993 180 159 63 chr4 19606919 19607296 -164681366 - MLT1C LTR MaLR 0 467 1 282 299 145 8 chr4 19608341 19608458 -164680204 + MIR SINE MIR 21 153 -109 1139 84 0 6 chr4 19608601 19608780 -164679882 + (TCTA)n Simple_repeat Simple_repeat 2 179 0 180 296 74 0 chr4 19608931 19609012 -164679650 - MIR3 SINE MIR -3 205 119 189 154 0 0 chr4 19609142 19609181 -164679481 + (ATG)n Simple_repeat Simple_repeat 2 40 0 637 255 56 31 chr4 19609232 19609428 -164679234 - MIR SINE MIR -60 202 2 201 147 0 0 chr4 19609450 19609484 -164679178 + (ATG)n Simple_repeat Simple_repeat 2 35 0 635 281 46 38 chr4 19609491 19609729 -164678933 - MIR SINE MIR -10 252 13 247 294 108 15 chr4 19610388 19610592 -164678070 - LTR33A LTR ERVL 0 523 301 1341 189 0 54 chr4 19610602 19610935 -164677727 + MER33 DNA MER1_type 9 323 -1 628 254 242 21 chr4 19610943 19611328 -164677334 - LTR50 LTR ERVL -323 472 3 248 265 68 38 chr4 19611337 19611469 -164677193 - Charlie8 DNA MER1_type -2243 174 39 243 200 38 38 chr4 19611474 19611554 -164677108 + MIR3 SINE MIR 126 205 -3 387 285 53 94 chr4 19612949 19613289 -164675373 - L2 LINE L2 -1 3312 2987 2599 90 25 6 chr4 19614825 19615182 -164673480 - THE1B LTR MaLR 0 364 1 288 77 0 0 chr4 19615692 19615731 -164672931 + (T)n Simple_repeat Simple_repeat 1 39 0 21 57 0 19 chr4 19617517 19617536 -164671126 + AT_rich Low_complexity Low_complexity 1 19 -33 1581 113 162 49 chr4 19617536 19617863 -164670799 - THE1B LTR MaLR 0 364 1 21 57 0 19 chr4 19617863 19617896 -164670766 + AT_rich Low_complexity Low_complexity 19 52 0 378 352 71 24 chr4 19617954 19618417 -164670245 - L1M4 LINE L1 -1093 5053 4569 292 324 153 6 chr4 19618443 19618613 -164670049 - MIR SINE MIR 0 262 68 21 36 0 0 chr4 19618711 19618739 -164669923 + AT_rich Low_complexity Low_complexity 1 28 0 346 197 0 0 chr4 19618914 19618985 -164669677 + L1M4 LINE L1 4538 4608 -1538 739 303 54 92 chr4 19618985 19619262 -164669400 + L1M4 LINE L1 3712 3998 -2148 633 110 7 132 chr4 19619262 19619398 -164669264 - FLAM_C SINE Alu -14 119 1 739 303 54 92 chr4 19619398 19619754 -164668908 + L1M4 LINE L1 3998 4321 -1825 2128 126 10 0 chr4 19620406 19620707 -164667955 - AluSx SINE Alu -8 304 1 2173 129 0 0 chr4 19620913 19621215 -164667447 - AluSg SINE Alu -8 302 1 341 280 283 4 chr4 19621530 19621719 -164666943 + MIR SINE MIR 11 249 -13 290 285 207 14 chr4 19622036 19622331 -164666331 + L1ME4a LINE L1 5770 6121 0 203 307 147 13 chr4 19622816 19622891 -164665771 + MIR SINE MIR 68 152 -110 1802 169 37 8 chr4 19622902 19623257 -164665405 + MLT1A1 LTR MaLR 1 365 0 425 319 50 0 chr4 19623367 19623527 -164665135 + MIR SINE MIR 20 187 -75 543 283 88 36 chr4 19623553 19623804 -164664858 - MER102b DNA MER1_type -20 321 58 334 214 149 66 chr4 19623841 19624152 -164664510 + MLT1H LTR MaLR 58 370 -39 1154 99 5 35 chr4 19624442 19624643 -164664019 + THE1C-int LTR MaLR 1385 1579 -1 2101 147 16 31 chr4 19624644 19625025 -164663637 + THE1C LTR MaLR 1 375 0 214 389 74 18 chr4 19625236 19625465 -164663197 - L2 LINE L2 -182 3090 2849 440 303 170 45 chr4 19625514 19626043 -164662619 + MLT1G1 LTR MaLR 1 595 0 1080 188 103 32 chr4 19626084 19626454 -164662208 + MSTC LTR MaLR 1 426 -2 483 113 0 0 chr4 19626610 19626681 -164661981 + L1PA5 LINE L1 6082 6152 -2 546 261 66 127 chr4 19626870 19627342 -164661320 + LTR16A1 LTR ERVL 15 457 0 259 288 90 9 chr4 19627682 19627793 -164660869 + MIR SINE MIR 131 250 -12 232 323 91 0 chr4 19627800 19627899 -164660763 + L2 LINE L2 3138 3245 -27 2803 149 32 38 chr4 19627967 19628442 -164660220 + MER70A LTR ERVL 1 472 0 21 57 0 0 chr4 19630156 19630191 -164658471 + AT_rich Low_complexity Low_complexity 1 35 0 188 219 0 0 chr4 19631058 19631099 -164657563 + L3b LINE CR1 1279 1319 -264 246 167 0 0 chr4 19632352 19632412 -164656250 + (TG)n Simple_repeat Simple_repeat 1 60 0 317 307 97 0 chr4 19633577 19633691 -164654971 - MER117 DNA MER1_type -10 187 63 435 246 14 56 chr4 19633714 19633856 -164654806 + L2 LINE L2 3134 3269 -3 208 273 55 55 chr4 19636572 19636682 -164651980 - MIR SINE MIR -28 234 125 1634 197 7 0 chr4 19636852 19637157 -164651505 + AluJb SINE Alu 1 307 -5 180 304 18 0 chr4 19637205 19637261 -164651401 + L2 LINE L2 3001 3057 -215 354 261 11 11 chr4 19637786 19637878 -164650784 + L2 LINE L2 3221 3312 -1 25 31 0 0 chr4 19638217 19638249 -164650413 + AT_rich Low_complexity Low_complexity 1 32 0 313 198 20 20 chr4 19638498 19638599 -164650063 + CT-rich Low_complexity Low_complexity 3 103 0 558 327 24 6 chr4 19638656 19638824 -164649838 + MIR3 SINE MIR 1 171 -37 246 193 0 0 chr4 19639339 19639396 -164649266 + (CA)n Simple_repeat Simple_repeat 1 57 0 192 48 71 0 chr4 19639460 19639502 -164649160 + A-rich Low_complexity Low_complexity 2 46 0 232 320 32 115 chr4 19640205 19640517 -164648145 + L2 LINE L2 2926 3211 -61 344 275 73 51 chr4 19640589 19640719 -164647943 + MER5A DNA MER1_type 7 144 -45 3578 159 113 6 chr4 19640719 19641356 -164647306 + MER39 LTR ERV1 1 705 -2 344 275 73 51 chr4 19641356 19641403 -164647259 + MER5A DNA MER1_type 144 188 -1 3325 152 29 0 chr4 19641940 19642459 -164646203 + L1PA16 LINE L1 5629 6162 -4 197 241 74 0 chr4 19642931 19642985 -164645677 + MIR SINE MIR 151 208 -54 391 236 45 11 chr4 19643081 19643170 -164645492 - L2 LINE L2 -12 3260 3169 468 51 0 0 chr4 19644555 19644614 -164644048 + (TGGA)n Simple_repeat Simple_repeat 3 61 0 483 185 157 0 chr4 19645270 19645378 -164643284 + MER58B DNA MER1_type 217 341 0 425 160 87 93 chr4 19647241 19647391 -164641271 + LTR33A LTR ERVL 1 149 -374 1888 189 62 36 chr4 19647392 19647842 -164640820 - MLT1C LTR MaLR 0 467 6 445 261 113 41 chr4 19647853 19648141 -164640521 + LTR33A LTR ERVL 147 523 0 561 306 67 0 chr4 19648230 19648439 -164640223 + MIR SINE MIR 40 262 0 303 71 0 0 chr4 19648532 19648574 -164640088 + (TG)n Simple_repeat Simple_repeat 2 43 0 1863 159 75 0 chr4 19648575 19648895 -164639767 - MER2 DNA MER2_type 0 345 2 481 205 26 113 chr4 19649337 19649488 -164639174 - MLT2C1 LTR ERVL 0 397 260 402 229 0 57 chr4 19649453 19649558 -164639104 - Tigger7 DNA MER2_type -30 2457 2359 * 2040 159 30 0 chr4 19649551 19649884 -164638778 - Tigger7 DNA MER2_type -1940 547 205 1310 205 31 0 chr4 19649934 19650163 -164638499 - Tigger7 DNA MER2_type -2239 248 13 461 278 124 72 chr4 19650450 19650756 -164637906 - L2 LINE L2 -19 3253 2932 675 267 16 53 chr4 19651842 19652089 -164636573 - L2 LINE L2 0 3313 3076 484 304 35 6 chr4 19652119 19652289 -164636373 + MLT1D LTR MaLR 1 175 -330 2705 194 10 41 chr4 19652289 19652871 -164635791 + MLT2B3 LTR ERVL 1 451 -2 1276 210 89 30 chr4 19652871 19653191 -164635471 + MLT1D LTR MaLR 166 505 0 680 127 196 13 chr4 19653232 19653390 -164635272 + MER53 DNA DNA 3 189 0 331 250 19 115 chr4 19653398 19653606 -164635056 - L2 LINE L2 -312 3001 2814 240 108 0 0 chr4 19653606 19653643 -164635019 + HSMAR1 DNA Mariner 1 37 -1250 2333 86 39 6 chr4 19653643 19653980 -164634682 + L1PB1 LINE L1 5440 5787 -364 1222 126 45 9 chr4 19654000 19654222 -164634440 + L1MA9 LINE L1 6078 6307 -5 197 65 32 0 chr4 19654253 19654284 -164634378 + (TA)n Simple_repeat Simple_repeat 1 32 0 2468 126 3 3 chr4 19654285 19654635 -164634027 + L1PB1 LINE L1 5801 6150 -1 493 104 0 0 chr4 19654645 19654712 -164633950 - MADE1 DNA Mariner -13 67 1 192 200 50 33 chr4 19654731 19654791 -164633871 - L2 LINE L2 -527 2787 2727 181 214 54 0 chr4 19655399 19655455 -164633207 - MIR SINE MIR -125 137 79 248 302 12 0 chr4 19708280 19708366 -164580296 - MER117 DNA MER1_type -106 91 5 2786 58 14 0 chr4 19708414 19708774 -164579888 - L1PA7 LINE L1 0 6154 5790 2243 116 0 10 chr4 19709523 19709833 -164578829 - AluSx SINE Alu -5 307 1 210 247 161 32 chr4 19710266 19710359 -164578303 - MIR SINE MIR -50 212 108 198 263 35 0 chr4 19710761 19710818 -164577844 + MIR SINE MIR 191 249 -13 657 296 24 24 chr4 19710818 19711031 -164577631 - MIR SINE MIR 0 262 50 21 0 0 0 chr4 19711680 19711701 -164576961 + AT_rich Low_complexity Low_complexity 1 21 0 331 347 41 34 chr4 19711817 19711964 -164576698 + L2 LINE L2 3125 3272 0 721 256 30 47 chr4 19712512 19712746 -164575916 - MIR SINE MIR -12 250 21 10310 124 9 37 chr4 19713025 19714885 -164573777 - L1P LINE L1 -1671 4475 2668 342 320 167 0 chr4 19715030 19715186 -164573476 - MIR SINE MIR -80 182 1 384 307 12 48 chr4 19715447 19715613 -164573049 - MIR SINE MIR -61 201 42 847 234 11 0 chr4 19715803 19715991 -164572671 + MER58A DNA MER1_type 35 224 0 1224 80 0 6 chr4 19716358 19716520 -164572142 - AluY SINE Alu -150 161 1 296 351 104 19 chr4 19718035 19718189 -164570473 + MIR3 SINE MIR 35 201 -7 346 216 155 35 chr4 19718760 19718876 -164569786 + L2 LINE L2 3184 3313 0 26 0 0 0 chr4 19718919 19718945 -164569717 + AT_rich Low_complexity Low_complexity 1 26 0 857 260 121 62 chr4 19720639 19721144 -164567518 + MLT1G1 LTR MaLR 45 590 -5 198 103 0 0 chr4 19721387 19721416 -164567246 + (T)n Simple_repeat Simple_repeat 1 29 0 274 266 0 0 chr4 19721419 19721483 -164567179 + MLT1K LTR MaLR 525 588 0 1884 213 60 14 chr4 19721623 19722106 -164566556 - MLT1D LTR MaLR 0 505 1 323 335 142 7 chr4 19722496 19722651 -164566011 + MIR SINE MIR 11 186 -76 294 269 0 37 chr4 19723165 19723273 -164565389 + MLT1H LTR MaLR 59 162 -387 2701 182 62 10 chr4 19723631 19724213 -164564449 + L1MB8 LINE L1 5558 6169 -9 21 36 0 0 chr4 19725065 19725093 -164563569 + AT_rich Low_complexity Low_complexity 1 28 0 9185 162 16 25 chr4 19727679 19730165 -164558497 + L1P3 LINE L1 416 2934 -3527 426 293 45 25 chr4 19731066 19731223 -164557439 + L1MD2 LINE L1 5462 5621 -2187 321 327 65 39 chr4 19731231 19731491 -164557171 + L1MD2 LINE L1 5725 5991 -368 403 318 45 17 chr4 19731588 19731764 -164556898 - MLT1J2 LTR MaLR -14 436 256 207 69 0 0 chr4 19733029 19733058 -164555604 + (TA)n Simple_repeat Simple_repeat 2 30 0 1473 184 62 7 chr4 19733425 19733713 -164554949 + AluJo SINE Alu 1 304 -8 374 324 29 67 chr4 19734092 19734330 -164554332 - MIR SINE MIR -1 261 33 429 200 59 0 chr4 19734466 19734551 -164554111 - MER91 DNA MER1_type -61 129 40 181 340 0 0 chr4 19734800 19734847 -164553815 - L2 LINE L2 -82 3190 3144 2320 179 65 7 chr4 19735798 19736201 -164552461 + MSTB LTR MaLR 1 426 0 789 301 4 4 chr4 19736808 19737037 -164551625 + MIR SINE MIR 34 262 0 2021 125 7 0 chr4 19737823 19738104 -164550558 + AluSp SINE Alu 3 285 -28 2012 120 3 0 chr4 19738379 19738697 -164549965 + AluSx SINE Alu 1 319 0 213 39 0 0 chr4 19738825 19738851 -164549811 + (CA)n Simple_repeat Simple_repeat 2 27 0 336 278 75 29 chr4 19739132 19739305 -164549357 + L1MA9 LINE L1 6084 6264 -48 905 138 0 0 chr4 19739325 19739455 -164549207 - FLAM_C SINE Alu -8 135 6 199 54 54 0 chr4 19739477 19739514 -164549148 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 326 331 31 0 chr4 19739533 19739663 -164548999 - MIR SINE MIR -26 236 103 369 338 14 7 chr4 19740044 19740189 -164548473 + L2 LINE L2 2722 2867 -447 399 260 114 8 chr4 19740492 19740615 -164548047 + L2 LINE L2 3178 3313 0 349 264 62 23 chr4 19741130 19741259 -164547403 - MIR SINE MIR -54 208 75 516 245 77 0 chr4 19741711 19741854 -164546808 + MIR SINE MIR 71 224 -38 194 250 105 13 chr4 19742896 19742972 -164545690 + L2 LINE L2 2708 2790 -524 196 188 0 42 chr4 19743184 19743232 -164545430 - L2 LINE L2 0 3313 3268 453 83 125 14 chr4 19743506 19743578 -164545084 + MADE1 DNA Mariner 1 80 0 1634 191 3 23 chr4 19743686 19743985 -164544677 + AluJo SINE Alu 5 297 -15 368 367 8 0 chr4 19745351 19745471 -164543191 - L2 LINE L2 -40 3232 3112 2287 122 91 49 chr4 19746393 19746802 -164541860 - MSTA LTR MaLR -2 426 1 1581 194 18 0 chr4 19749080 19749363 -164539299 + AluJo SINE Alu 6 293 -19 210 329 14 0 chr4 19750859 19750929 -164537733 + L2 LINE L2 3242 3312 -1 859 271 20 24 chr4 19750975 19751222 -164537440 - MIR SINE MIR 0 262 17 446 200 285 38 chr4 19751578 19751749 -164536913 - MIR SINE MIR -17 245 34 2403 138 11 27 chr4 19752108 19752478 -164536184 + THE1B LTR MaLR 1 364 0 1146 209 5 14 chr4 19752829 19753039 -164535623 + MER63A DNA MER1_type 3 210 0 180 312 46 73 chr4 19753173 19753282 -164535380 + L2 LINE L2 3155 3260 -12 2164 176 28 0 chr4 19753650 19754003 -164534659 + MLT1A1 LTR MaLR 3 365 0 2329 103 0 6 chr4 19754836 19755147 -164533515 - AluSc SINE Alu 0 309 1 1458 195 53 55 chr4 19755285 19755726 -164532936 + MLT1C LTR MaLR 13 498 -7 1801 256 84 57 chr4 19756563 19757158 -164531504 - MLT1E3 LTR MaLR -13 611 1 532 332 59 13 chr4 19757418 19757656 -164531006 + MIR SINE MIR 11 259 -3 1305 247 60 11 chr4 19757806 19758154 -164530508 - MLT1A1 LTR MaLR 0 365 1 739 210 55 45 chr4 19758516 19758716 -164529946 + MIR SINE MIR 53 254 -8 320 152 15 0 chr4 19758768 19758834 -164529828 + CT-rich Low_complexity Low_complexity 2 68 0 594 307 22 26 chr4 19761064 19761292 -164527370 - MIR SINE MIR -34 228 2 180 77 0 0 chr4 19761788 19761814 -164526848 + (CCTG)n Simple_repeat Simple_repeat 2 27 0 * 554 191 25 29 chr4 19761811 19762052 -164526610 + CT-rich Low_complexity Low_complexity 1 240 0 1088 140 38 11 chr4 19762628 19762814 -164525848 + MER20 DNA MER1_type 24 214 -5 233 290 89 40 chr4 19763516 19763640 -164525022 - MIR SINE MIR -98 164 35 321 68 0 0 chr4 19763773 19763817 -164524845 + (CA)n Simple_repeat Simple_repeat 1 44 0 1152 209 32 12 chr4 19764063 19764312 -164524350 - L1MD2 LINE L1 -1 6358 6105 236 329 61 12 chr4 19764475 19764557 -164524105 - L2 LINE L2 -81 3191 3106 21 0 0 0 chr4 19764606 19764627 -164524035 + AT_rich Low_complexity Low_complexity 1 21 0 204 243 0 86 chr4 19765469 19765539 -164523123 - L2 LINE L2 -21 3292 3229 200 233 75 88 chr4 19765797 19765956 -164522706 - L2 LINE L2 -216 3056 2900 * 291 281 25 94 chr4 19765953 19766113 -164522549 + MIR SINE MIR 36 184 -78 550 259 6 37 chr4 19766250 19766434 -164522228 + MLT1E LTR MaLR 22 196 -359 4930 170 35 28 chr4 19767216 19768176 -164520486 + L1P LINE L1 11 977 -5169 17393 98 3 5 chr4 19768180 19770655 -164518007 + L1P LINE L1 1158 3627 -2519 489 362 18 9 chr4 19771056 19771280 -164517382 + MIR SINE MIR 37 262 0 23 0 0 0 chr4 19771810 19771833 -164516829 + AT_rich Low_complexity Low_complexity 1 23 0 282 225 101 94 chr4 19772337 19772475 -164516187 + MIR SINE MIR 31 169 -93 433 345 56 40 chr4 19773120 19773369 -164515293 + MIR SINE MIR 2 254 -8 408 40 0 0 chr4 19775793 19775843 -164512819 + (TA)n Simple_repeat Simple_repeat 1 50 0 210 37 0 0 chr4 19775842 19775869 -164512793 + (CA)n Simple_repeat Simple_repeat 2 28 0 * 183 204 0 0 chr4 19776802 19776851 -164511811 + A-rich Low_complexity Low_complexity 1 49 0 1058 231 77 5 chr4 19777928 19778136 -164510526 - MER58A DNA MER1_type 0 224 2 312 335 31 25 chr4 19778327 19778488 -164510174 + MIR3 SINE MIR 24 185 -23 347 56 19 0 chr4 19778491 19778545 -164510117 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 223 287 160 0 chr4 19778607 19778701 -164509961 + MIR SINE MIR 98 206 -56 2006 143 0 10 chr4 19778886 19779179 -164509483 + AluSx SINE Alu 1 290 -22 255 273 39 13 chr4 19779480 19779557 -164509105 - MIR SINE MIR -98 164 86 180 97 0 0 chr4 19779845 19779876 -164508786 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 1426 197 59 36 chr4 19780294 19780651 -164508011 + MLT1A1 LTR MaLR 1 501 -4 234 320 169 48 chr4 19781070 19781301 -164507361 - MIR SINE MIR 0 262 4 21 0 0 0 chr4 19781694 19781715 -164506947 + AT_rich Low_complexity Low_complexity 1 21 0 396 267 119 87 chr4 19782028 19782339 -164506323 - LTR33A LTR ERVL 0 523 203 216 296 120 21 chr4 19782835 19782977 -164505685 - L3b LINE CR1 -123 1460 1305 881 196 103 14 chr4 19783156 19783370 -164505292 - MIR SINE MIR -21 241 9 372 276 0 0 chr4 19784117 19784204 -164504458 + L2 LINE L2 3186 3272 0 201 133 0 0 chr4 19784252 19784282 -164504380 + (TGG)n Simple_repeat Simple_repeat 2 31 0 192 288 14 129 chr4 19784305 19784444 -164504218 - MIR SINE MIR -65 197 75 533 189 45 0 chr4 19784660 19784771 -164503891 - MER20 DNA MER1_type -103 116 1 322 240 0 60 chr4 19785058 19785158 -164503504 - L1MC4 LINE L1 -1339 6703 6610 219 114 0 0 chr4 19785737 19785772 -164502890 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 411 299 43 6 chr4 19785865 19786029 -164502633 + MIR SINE MIR 87 256 -6 546 242 45 22 chr4 19786051 19786229 -164502433 + Charlie8 DNA MER1_type 3 184 -2233 183 304 203 0 chr4 19786480 19786559 -164502103 - L2 LINE L2 -8 3305 3211 774 319 138 18 chr4 19787014 19787397 -164501265 - L2 LINE L2 -338 2976 2548 346 185 0 0 chr4 19787468 19787533 -164501129 - Charlie5 DNA MER1_type -29 2583 2519 2511 212 60 24 chr4 19787569 19788325 -164500337 - Charlie5 DNA MER1_type -1829 783 1 2562 50 0 3 chr4 19788551 19788854 -164499808 + AluY SINE Alu 1 302 -9 409 275 74 62 chr4 19789340 19789584 -164499078 - MIR SINE MIR -9 253 7 305 303 10 10 chr4 19789620 19789719 -164498943 - L2 LINE L2 -2 3270 3172 1762 96 11 23 chr4 19791694 19791955 -164496707 - AluSg SINE Alu -5 305 48 262 338 47 14 chr4 19793088 19793236 -164495426 + MIR SINE MIR 110 262 0 527 87 39 12 chr4 19793604 19793838 -164494824 + AluSx SINE Alu 1 308 -1 1362 225 15 18 chr4 19793943 19794276 -164494386 - MER58B DNA MER1_type -1 340 9 479 216 30 52 chr4 19795158 19795292 -164493370 - MER5A DNA MER1_type -22 167 37 2201 68 17 27 chr4 19795491 19795616 -164493046 + AluY SINE Alu 1 126 -185 459 0 0 0 chr4 19795616 19795667 -164492995 + (CA)n Simple_repeat Simple_repeat 2 52 0 2201 68 17 27 chr4 19795667 19795836 -164492826 + AluY SINE Alu 126 292 -19 310 264 65 32 chr4 19796102 19796257 -164492405 - L2 LINE L2 -58 3255 3096 240 302 12 35 chr4 19796269 19796355 -164492307 + L2 LINE L2 3230 3313 0 769 285 88 36 chr4 19796404 19797015 -164491647 - L1MC4a LINE L1 -1910 5898 5256 191 309 58 89 chr4 19797235 19797426 -164491236 - L3 LINE CR1 -1 1576 1392 478 139 0 50 chr4 19798263 19798329 -164490333 + MER53 DNA DNA 6 67 -122 1270 169 8 37 chr4 19798329 19798572 -164490090 - MER46A DNA MER2_type 0 236 1 478 139 0 50 chr4 19798572 19798606 -164490056 + MER53 DNA DNA 67 101 -88 22 35 0 0 chr4 19798711 19798740 -164489922 + AT_rich Low_complexity Low_complexity 1 29 0 182 88 0 29 chr4 19798887 19798921 -164489741 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 661 263 6 6 chr4 19799319 19799479 -164489183 - MIR SINE MIR -52 210 51 430 337 74 10 chr4 19799827 19800029 -164488633 - MIR SINE MIR 0 262 48 438 306 100 18 chr4 19800061 19800290 -164488372 + MIR SINE MIR 14 261 -1 277 321 12 0 chr4 19800294 19800375 -164488287 + (CTA)n Simple_repeat Simple_repeat 1 82 0 233 331 71 26 chr4 19801234 19801388 -164487274 + L2 LINE L2 2924 3084 -188 361 341 40 23 chr4 19801574 19801747 -164486915 - L2 LINE L2 -192 3080 2905 181 343 0 15 chr4 19801897 19801964 -164486698 + MIR SINE MIR 66 131 -131 495 246 9 80 chr4 19803593 19803817 -164484845 + MLT1H LTR MaLR 23 230 -319 237 311 22 11 chr4 19804069 19804159 -164484503 + L2 LINE L2 3175 3265 -48 1776 198 3 14 chr4 19804545 19804920 -164483742 + MLT1A1 LTR MaLR 1 365 0 222 319 42 42 chr4 19805040 19805159 -164483503 - L2 LINE L2 -177 3095 2977 207 357 32 16 chr4 19805347 19805473 -164483189 - MIR SINE MIR -76 186 59 357 141 0 0 chr4 19805669 19805740 -164482922 + (GAATG)n Simple_repeat Simple_repeat 2 72 0 1036 196 50 122 chr4 19805801 19806204 -164482458 + MLT1A2 LTR MaLR 1 374 0 339 321 30 8 chr4 19808533 19808664 -164479998 + MIR SINE MIR 117 250 -12 201 175 0 0 chr4 19808798 19808838 -164479824 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 2429 91 0 0 chr4 19809170 19809479 -164479183 - AluSq SINE Alu -4 309 1 251 159 29 43 chr4 19809934 19810003 -164478659 + MLT1F1 LTR MaLR 52 119 -448 980 211 143 65 chr4 19810018 19810431 -164478231 + L1MD3 LINE L1 7384 7828 -167 193 346 105 15 chr4 19811038 19811171 -164477491 + MIR3 SINE MIR 41 185 -23 975 182 0 0 chr4 19811700 19811865 -164476797 - FRAM SINE Alu -12 164 1 406 306 77 21 chr4 19811879 19812349 -164476313 + L1ME4a LINE L1 5603 6098 -23 241 278 0 0 chr4 19812833 19812887 -164475775 + GA-rich Low_complexity Low_complexity 1 54 0 204 234 2 0 chr4 19813471 19813525 -164475137 + GA-rich Low_complexity Low_complexity 3 40 0 1811 153 43 0 chr4 19813776 19814058 -164474604 + AluSx SINE Alu 1 294 -18 1221 92 0 0 chr4 19814058 19814231 -164474431 + (TA)n Simple_repeat Simple_repeat 2 174 0 219 336 25 25 chr4 19815602 19815721 -164472941 - L3 LINE CR1 -126 1451 1333 197 259 62 49 chr4 19815742 19815823 -164472839 - L2 LINE L2 -4 3268 3187 220 306 63 27 chr4 19816363 19816474 -164472188 + L2 LINE L2 3191 3305 -8 453 125 25 0 chr4 19816500 19816615 -164472047 - AluSc SINE Alu 0 342 226 194 62 31 0 chr4 19816750 19816782 -164471880 + (CATTC)n Simple_repeat Simple_repeat 5 37 0 188 381 25 8 chr4 19816972 19817090 -164471572 + MIR SINE MIR 59 178 -84 357 242 24 32 chr4 19817302 19817426 -164471236 + MIR SINE MIR 92 214 -48 237 183 0 33 chr4 19819527 19819587 -164469075 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 287 305 92 67 chr4 19819958 19820122 -164468540 + MIR3 SINE MIR 37 204 -4 252 341 44 22 chr4 19821575 19821710 -164466952 - MIR SINE MIR -73 189 52 29 60 0 0 chr4 19821867 19821917 -164466745 + AT_rich Low_complexity Low_complexity 1 50 0 407 125 31 10 chr4 19821998 19822094 -164466568 + (TA)n Simple_repeat Simple_repeat 2 99 0 2909 167 11 9 chr4 19822098 19822648 -164466014 - MER89 LTR ERV1 -7 552 2 273 119 0 0 chr4 19822676 19822718 -164465944 + (TG)n Simple_repeat Simple_repeat 1 42 0 186 174 275 14 chr4 19823447 19823516 -164465146 - L2 LINE L2 -1 3271 3185 628 342 53 38 chr4 19823874 19824380 -164464282 - L2 LINE L2 0 3313 2802 1776 197 52 13 chr4 19824392 19824773 -164463889 + MSTD LTR MaLR 1 396 0 399 210 12 0 chr4 19824886 19824967 -164463695 - Tigger5 DNA MER2_type 0 2323 2242 367 218 13 0 chr4 19824957 19825035 -164463627 + Tigger5 DNA MER2_type 2242 2320 -3 * 473 182 0 0 chr4 19825036 19825113 -164463549 - Tigger5 DNA MER2_type -2246 77 1 222 294 29 0 chr4 19825113 19825181 -164463481 + L2 LINE L2 2885 2954 -359 482 238 88 38 chr4 19825611 19825771 -164462891 + MIR SINE MIR 49 216 -46 362 309 0 65 chr4 19825826 19825965 -164462697 - MIR3 SINE MIR -76 132 3 21 0 0 0 chr4 19825981 19826002 -164462660 + AT_rich Low_complexity Low_complexity 1 21 0 578 313 52 17 chr4 19826890 19827120 -164461542 - L3 LINE CR1 -9 1568 1331 1323 193 21 89 chr4 19827434 19827860 -164460802 - MLT2C1 LTR ERVL 0 397 1 402 278 0 0 chr4 19828032 19828129 -164460533 + MIR SINE MIR 96 192 -70 251 263 40 0 chr4 19828193 19828269 -164460393 - MIR SINE MIR 0 262 184 432 108 0 54 chr4 19828278 19828352 -164460310 - MSTD LTR MaLR -323 73 4 361 303 72 0 chr4 19829179 19829331 -164459331 + MER103 DNA DNA 4 166 0 21 0 0 0 chr4 19829665 19829686 -164458976 + AT_rich Low_complexity Low_complexity 1 21 0 250 400 36 0 chr4 19829686 19829796 -164458866 + L2 LINE L2 3139 3252 -20 9558 136 34 5 chr4 19829913 19831423 -164457239 - L1M1 LINE L1 -4868 2697 1144 1678 257 145 14 chr4 19831524 19832088 -164456574 - MLT1E1 LTR MaLR -15 639 2 2167 108 3 3 chr4 19832145 19832433 -164456229 - AluSx SINE Alu -24 288 1 1192 127 0 0 chr4 19833071 19833237 -164455425 + AluSg SINE Alu 1 166 -144 8200 228 60 35 chr4 19833343 19834588 -164454074 - L1MD1 LINE L1 -322 5920 4707 2143 64 10 54 chr4 19834588 19834904 -164453758 - AluY SINE Alu 0 303 1 8200 228 60 35 chr4 19834904 19835702 -164452960 - L1MD1 LINE L1 -1535 4707 3930 2327 85 0 13 chr4 19835702 19836008 -164452654 - AluY SINE Alu -9 302 1 8200 228 60 35 chr4 19836008 19836440 -164452222 - L1MD1 LINE L1 -2312 3930 3510 1248 216 122 61 chr4 19836440 19836866 -164451796 - MSTB2 LTR MaLR -2 455 4 8200 228 60 35 chr4 19836866 19837726 -164450936 - L1MD1 LINE L1 -2732 3510 2512 1608 124 0 4 chr4 19837806 19838031 -164450631 - AluSc SINE Alu -85 224 1 279 308 77 21 chr4 19838300 19838443 -164450219 + L2 LINE L2 3163 3313 0 426 214 95 8 chr4 19838625 19838751 -164449911 + L1ME2 LINE L1 6007 6143 -21 198 305 63 68 chr4 19839420 19839440 -164449222 - L2 LINE L2 0 3313 3294 3458 43 2 80 chr4 19839440 19839926 -164448736 - LTR7 LTR ERV1 -2 448 1 198 305 63 68 chr4 19839926 19840095 -164448567 - L2 LINE L2 -19 3294 3125 277 297 69 63 chr4 19840217 19840392 -164448270 - MIR SINE MIR -40 222 47 211 286 0 36 chr4 19841869 19841925 -164446737 + L2 LINE L2 3213 3266 -6 21 0 0 0 chr4 19843405 19843426 -164445236 + AT_rich Low_complexity Low_complexity 1 21 0 1900 150 33 0 chr4 19843485 19843785 -164444877 + MER21A LTR ERV1 621 930 -1 2519 88 0 0 chr4 19843789 19844097 -164444565 - AluSx SINE Alu -4 308 1 421 193 105 0 chr4 19844105 19844219 -164444443 + L1MA4 LINE L1 6175 6300 0 1407 215 76 69 chr4 19844232 19844693 -164443969 - L1ME2 LINE L1 -42 6122 5659 193 317 77 29 chr4 19844724 19844828 -164443834 - MIR SINE MIR -128 134 26 243 293 60 43 chr4 19844936 19845052 -164443610 - L2 LINE L2 -1 3271 3154 221 231 115 0 chr4 19845398 19845450 -164443212 - MIR SINE MIR -108 154 97 221 336 56 16 chr4 19845573 19845698 -164442964 - L2 LINE L2 -501 2813 2684 303 232 0 37 chr4 19845728 19845810 -164442852 - MER96 DNA MER1_type? -6 169 91 369 263 105 7 chr4 19846207 19846359 -164442303 + MIR3 SINE MIR 20 186 -22 2464 70 0 3 chr4 19847252 19847553 -164441109 - AluY SINE Alu -11 300 1 442 270 101 28 chr4 19847595 19847773 -164440889 - MIR SINE MIR -6 256 66 217 289 127 84 chr4 19847888 19848054 -164440608 - MIR3 SINE MIR -23 185 13 361 282 208 4 chr4 19848284 19848525 -164440137 - L2 LINE L2 -117 3196 2907 376 191 11 53 chr4 19848533 19848627 -164440035 + L2 LINE L2 3222 3311 -2 905 245 5 0 chr4 19848804 19848996 -164439666 - MER58A DNA MER1_type -31 193 1 189 313 76 30 chr4 19849187 19849318 -164439344 - L2 LINE L2 -1032 2282 2146 189 318 23 34 chr4 19849692 19849780 -164438882 + L2 LINE L2 3001 3087 -185 1777 155 22 40 chr4 19850245 19850567 -164438095 - MLT1B LTR MaLR -74 316 1 4849 134 45 5 chr4 19850577 19851345 -164437317 - Tigger1 DNA MER2_type -2 2416 1618 1911 142 153 26 chr4 19851345 19851519 -164437143 + MSTA LTR MaLR 1 152 -276 3464 151 21 96 chr4 19851519 19852004 -164436658 + LTR8 LTR ERV1 1 412 -279 2269 121 0 3 chr4 19852004 19852309 -164436353 + AluSx SINE Alu 1 304 -8 3464 151 21 96 chr4 19852309 19852570 -164436092 + LTR8 LTR ERV1 412 691 0 1911 142 153 26 chr4 19852570 19852775 -164435887 + MSTA LTR MaLR 152 428 0 * 10997 128 12 3 chr4 19852775 19854379 -164434283 - Tigger1 DNA MER2_type -799 1619 1 186 229 0 42 chr4 19854388 19854436 -164434226 - L2 LINE L2 -42 3271 3226 332 43 0 21 chr4 19854678 19854725 -164433937 + (TG)n Simple_repeat Simple_repeat 1 46 0 304 173 0 0 chr4 19854749 19854801 -164433861 + L2 LINE L2 3262 3313 0 417 324 72 5 chr4 19855177 19855399 -164433263 - MIR SINE MIR -13 249 13 21 36 0 0 chr4 19856385 19856413 -164432249 + AT_rich Low_complexity Low_complexity 1 28 0 269 333 31 0 chr4 19856605 19856701 -164431961 - MER46C DNA MER2_type 0 338 240 364 245 49 10 chr4 19856771 19856873 -164431789 - MER46C DNA MER2_type -232 106 1 258 32 0 0 chr4 19856937 19856968 -164431694 + (A)n Simple_repeat Simple_repeat 1 31 0 370 209 9 9 chr4 19857308 19857423 -164431239 + (TA)n Simple_repeat Simple_repeat 2 116 0 214 282 70 14 chr4 19857813 19857884 -164430778 - MIR3 SINE MIR -14 194 120 488 284 22 0 chr4 19857954 19858088 -164430574 + MIR SINE MIR 91 227 -35 226 288 0 0 chr4 19858122 19858181 -164430481 - MIR SINE MIR -130 78 20 2487 188 29 0 chr4 19858297 19858711 -164429951 + MSTB LTR MaLR 1 426 0 523 172 21 0 chr4 19858867 19858960 -164429702 + MSTB1 LTR MaLR 3 97 -335 3213 219 17 3 chr4 19858964 19859625 -164429037 + MSTB-int LTR MaLR 1 670 -981 1251 154 12 77 chr4 19859622 19859881 -164428781 + MSTB-int LTR MaLR 1403 1644 -7 * 2190 157 58 62 chr4 19859888 19860322 -164428340 + MSTB1 LTR MaLR 1 432 0 21 0 0 0 chr4 19860889 19860910 -164427752 + AT_rich Low_complexity Low_complexity 1 21 0 204 40 0 0 chr4 19861225 19861250 -164427412 + (T)n Simple_repeat Simple_repeat 1 25 0 183 139 0 28 chr4 19862335 19862371 -164426291 + L2 LINE L2 3266 3300 -13 2605 153 10 56 chr4 19863251 19863754 -164424908 - MLT1D LTR MaLR 0 505 26 2195 90 14 0 chr4 19864224 19864513 -164424149 + L1PA10 LINE L1 5628 5920 -248 1836 119 0 0 chr4 19864532 19864802 -164423860 - AluSx SINE Alu 0 311 42 495 171 0 0 chr4 19864802 19864872 -164423790 - AluS SINE Alu -240 71 2 2433 83 0 0 chr4 19864900 19865201 -164423461 + AluY SINE Alu 2 302 -9 2548 153 22 0 chr4 19865232 19865638 -164423024 + MLT1C LTR MaLR 1 415 -52 43834 30 21 1 chr4 19865638 19871664 -164416998 - L1HS LINE L1 -3 6152 3 404 134 104 0 chr4 19871811 19871878 -164416784 + MLT1C LTR MaLR 394 467 0 523 315 79 47 chr4 19872752 19873006 -164415656 + MIR SINE MIR 1 262 0 27 87 0 0 chr4 19873149 19873218 -164415444 + AT_rich Low_complexity Low_complexity 1 69 0 27 62 0 0 chr4 19873260 19873308 -164415354 + AT_rich Low_complexity Low_complexity 1 48 0 196 256 0 0 chr4 19873314 19873357 -164415305 - L2 LINE L2 -4 3309 3267 225 322 25 58 chr4 19873524 19873645 -164415017 + L2 LINE L2 3151 3267 -5 253 330 55 0 chr4 19873666 19873757 -164414905 + MIR3 SINE MIR 67 162 -46 365 286 71 52 chr4 19874273 19874581 -164414081 - L1ME4a LINE L1 -19 6102 5789 295 208 83 0 chr4 19875016 19875088 -164413574 - L1ME4a LINE L1 -329 5792 5715 1729 130 10 31 chr4 19876429 19876722 -164411940 - AluJb SINE Alu -3 309 23 270 381 24 0 chr4 19877041 19877167 -164411495 - MIR SINE MIR -100 162 34 1974 144 0 0 chr4 19877368 19877681 -164410981 + AluSx SINE Alu 1 313 0 704 168 0 9 chr4 19877701 19877814 -164410848 - FLAM_A SINE Alu -23 119 8 203 313 53 61 chr4 19877832 19877963 -164410699 + MIR3 SINE MIR 48 177 -31 241 288 34 0 chr4 19878126 19878185 -164410477 + L2 LINE L2 3249 3309 -4 477 253 13 53 chr4 19878406 19878556 -164410106 - MER103 DNA DNA -1 165 22 276 231 38 42 chr4 19879159 19879290 -164409372 + MIR SINE MIR 24 204 -58 1436 111 106 0 chr4 19879355 19879563 -164409099 + MER30 DNA MER1_type 1 230 0 2276 101 7 7 chr4 19879605 19879913 -164408749 - AluSc SINE Alu -1 308 1 1276 193 159 52 chr4 19880369 19880789 -164407873 + MLT1C LTR MaLR 3 467 0 196 350 31 10 chr4 19880850 19880947 -164407715 + L2 LINE L2 2634 2732 -582 2406 91 0 0 chr4 19881028 19881337 -164407325 - AluY SINE Alu -2 309 1 196 333 42 52 chr4 19881395 19881491 -164407171 + L2 LINE L2 3138 3232 -40 567 273 19 7 chr4 19881650 19881804 -164406858 - MIR SINE MIR -78 184 29 369 321 57 25 chr4 19882008 19882167 -164406495 - L2 LINE L2 -1 3271 3108 281 243 14 14 chr4 19882643 19882717 -164405945 - MER116 DNA Mariner -4 76 3 655 244 96 48 chr4 19882807 19883078 -164405584 - LTR16C LTR ERVL -32 459 176 247 261 148 35 chr4 19883200 19883315 -164405347 + MIR SINE MIR 60 187 -75 2153 224 21 25 chr4 19883947 19884473 -164404189 - L1ME2 LINE L1 -7 6157 5634 612 247 7 7 chr4 19884456 19884606 -164404056 + L1ME LINE L1 5326 5475 -687 * 303 208 83 31 chr4 19884659 19884755 -164403907 - L1MC5 LINE L1 -29 7932 7832 1005 240 66 60 chr4 19884781 19885147 -164403515 - MER21B LTR ERV1 -88 775 408 911 229 21 30 chr4 19885176 19885412 -164403250 - MER21B LTR ERV1 -528 335 102 391 137 11 126 chr4 19885454 19885549 -164403113 - MER21B LTR ERV1 -767 96 13 773 236 14 0 chr4 19885643 19885791 -164402871 - FRAM SINE Alu -26 150 1 341 264 189 67 chr4 19885846 19886167 -164402495 - L1MC5 LINE L1 -253 7708 7327 1709 90 5 0 chr4 19886167 19886389 -164402273 - L1PA13 LINE L1 -6 6157 5935 341 264 189 67 chr4 19886389 19886469 -164402193 - L1MC5 LINE L1 -634 7327 7258 463 137 0 0 chr4 19887400 19887473 -164401189 + MER41A LTR ERV1 399 471 -83 718 154 24 12 chr4 19887473 19887642 -164401020 + GA-rich Low_complexity Low_complexity 4 174 0 230 308 111 17 chr4 19887765 19887882 -164400780 + MER5B DNA MER1_type 51 178 0 268 258 152 67 chr4 19888804 19888982 -164399680 + L2 LINE L2 3117 3309 -4 473 148 89 10 chr4 19889416 19889517 -164399145 - MER34B LTR ERV1 0 565 457 1769 204 68 52 chr4 19889836 19890351 -164398311 - MER39 LTR ERV1 -4 703 1 190 283 19 0 chr4 19890595 19890648 -164398014 - MIR SINE MIR -189 73 20 1031 212 66 78 chr4 19890893 19891394 -164397268 - L1MC5 LINE L1 -30 7931 7437 325 328 70 67 chr4 19891435 19891776 -164396886 - L1MC4a LINE L1 -1344 6464 6123 822 279 48 24 chr4 19891801 19892138 -164396524 - L1MC4a LINE L1 -1776 6032 5688 357 82 0 0 chr4 19892150 19892199 -164396463 + (TCCC)n Simple_repeat Simple_repeat 4 52 0 234 91 0 0 chr4 19892241 19892274 -164396388 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 472 268 43 112 chr4 19892289 19892565 -164396097 - L1MC4a LINE L1 -2152 5656 5400 304 281 10 10 chr4 19892573 19892669 -164395993 - L1MC4a LINE L1 -2238 3908 3813 2520 70 0 10 chr4 19892713 19893026 -164395636 - AluY SINE Alu -1 310 1 311 287 75 23 chr4 19893071 19893245 -164395417 - L1MC4a LINE L1 -2364 3782 3600 2320 96 7 0 chr4 19893379 19893682 -164394980 + AluY SINE Alu 2 306 -5 396 252 32 96 chr4 19894021 19894271 -164394391 - MIR SINE MIR -20 242 9 228 232 0 0 chr4 19894439 19894495 -164394167 + L1MC4 LINE L1 6648 6703 -1339 225 0 0 0 chr4 19894507 19894532 -164394130 + (CA)n Simple_repeat Simple_repeat 2 26 0 2044 97 7 39 chr4 19894760 19895070 -164393592 + AluSg SINE Alu 3 302 -8 240 196 20 0 chr4 19895132 19895183 -164393479 + L2 LINE L2 3261 3312 -1 2318 83 144 35 chr4 19895291 19895688 -164392974 - LTR7 LTR ERV1 -10 440 1 239 316 9 18 chr4 19895858 19895972 -164392690 + L1ME4a LINE L1 5319 5431 -690 470 297 134 10 chr4 19895997 19896287 -164392375 - L1MC/D LINE L1 -2198 5610 5285 2300 52 39 30 chr4 19896526 19896831 -164391831 + AluY SINE Alu 1 308 -3 1457 122 14 0 chr4 19896858 19897071 -164391591 - AluSp SINE Alu -5 308 93 445 310 125 27 chr4 19897109 19897443 -164391219 - L2 LINE L2 -229 3084 2726 682 128 0 28 chr4 19898650 19898759 -164389903 - L1MD3 LINE L1 -28 7967 7862 1055 176 26 0 chr4 19898773 19898966 -164389696 - MLT2B1 LTR ERVL -322 198 1 16814 167 21 6 chr4 19898966 19901775 -164386887 - ERVL-B1 LTR ERVL -7 5757 2907 4829 201 26 21 chr4 19901779 19902298 -164386364 - ERVL-B1 LTR ERVL -3977 1787 1258 2358 63 0 7 chr4 19902298 19902627 -164386035 - AluY SINE Alu 0 327 1 4829 201 26 21 chr4 19902627 19903110 -164385552 - ERVL-B1 LTR ERVL -4506 1258 779 716 142 8 37 chr4 19903118 19903252 -164385410 - MLT2B1 LTR ERVL -389 131 2 2002 100 76 3 chr4 19903602 19903891 -164384771 + AluSx SINE Alu 1 310 -2 450 309 90 17 chr4 19904242 19904543 -164384119 + L1ME4a LINE L1 5531 5853 -268 267 31 0 0 chr4 19905336 19905368 -164383294 + (GA)n Simple_repeat Simple_repeat 1 32 0 1999 201 57 5 chr4 19905713 19906135 -164382527 - MLT1C LTR MaLR -2 465 22 914 299 129 27 chr4 19906192 19906634 -164382028 + MLT1K LTR MaLR 101 587 -1 747 295 44 1 chr4 19906746 19906978 -164381684 + MIR SINE MIR 22 260 -2 304 314 36 20 chr4 19906995 19907162 -164381500 - MIR SINE MIR -65 143 20 474 285 121 91 chr4 19907460 19907933 -164380729 - L2 LINE L2 0 3313 2827 2359 106 0 0 chr4 19908145 19908457 -164380205 + AluSx SINE Alu 1 312 0 330 362 29 7 chr4 19909031 19909169 -164379493 + L2 LINE L2 2941 3081 -191 800 244 77 24 chr4 19909364 19909610 -164379052 - MIR SINE MIR 0 262 4 355 230 0 14 chr4 19909667 19909741 -164378921 + L2 LINE L2 3240 3312 -1 569 276 68 22 chr4 19909875 19910088 -164378574 - MIR SINE MIR -2 260 42 2316 97 13 3 chr4 19910207 19910515 -164378147 + AluSq SINE Alu 1 311 -2 357 226 26 35 chr4 19910761 19910876 -164377786 - Charlie8 DNA MER1_type -2228 189 76 661 299 47 8 chr4 19911624 19911858 -164376804 + MIR SINE MIR 8 250 -12 2248 100 0 3 chr4 19911951 19912241 -164376421 - AluSg SINE Alu -15 295 7 1072 142 0 0 chr4 19912421 19912602 -164376060 - AluSg/x SINE Alu 0 309 129 2379 88 13 0 chr4 19912603 19912909 -164375753 - AluSg SINE Alu 0 310 1 574 293 81 22 chr4 19912923 19913145 -164375517 - MIR SINE MIR -18 244 10 180 200 0 0 chr4 19913320 19913360 -164375302 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 189 74 0 0 chr4 19913362 19913389 -164375273 + (TG)n Simple_repeat Simple_repeat 1 27 0 207 0 0 0 chr4 19914891 19914914 -164373748 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 243 0 0 0 chr4 19915512 19915539 -164373123 + (TC)n Simple_repeat Simple_repeat 1 27 0 813 144 6 17 chr4 19915539 19915720 -164372942 + CT-rich Low_complexity Low_complexity 2 180 0 180 0 0 0 chr4 19915784 19915804 -164372858 + (CCTG)n Simple_repeat Simple_repeat 2 21 0 324 70 0 0 chr4 19916412 19916455 -164372207 + (TA)n Simple_repeat Simple_repeat 2 44 0 211 196 0 22 chr4 19918702 19918748 -164369914 + CT-rich Low_complexity Low_complexity 2 46 0 186 43 0 0 chr4 19919210 19919233 -164369429 + (T)n Simple_repeat Simple_repeat 1 23 0 197 241 17 69 chr4 19919499 19919557 -164369105 + L2 LINE L2 3249 3303 -10 21 0 0 0 chr4 19921934 19921955 -164366707 + AT_rich Low_complexity Low_complexity 1 21 0 198 383 70 31 chr4 19922039 19922167 -164366495 - L2 LINE L2 -43 3229 3097 371 312 5 48 chr4 19922242 19922428 -164366234 - MIR SINE MIR -10 252 75 2347 105 0 0 chr4 19922750 19923055 -164365607 + AluSg SINE Alu 4 308 -2 27 29 0 0 chr4 19923128 19923162 -164365500 + AT_rich Low_complexity Low_complexity 1 34 0 497 353 107 0 chr4 19923943 19924269 -164364393 + L2 LINE L2 2586 2946 -368 433 278 150 38 chr4 19924445 19924711 -164363951 + L2 LINE L2 3017 3312 -1 273 98 0 0 chr4 19925234 19925275 -164363387 + (TG)n Simple_repeat Simple_repeat 1 41 0 180 0 0 0 chr4 19925274 19925294 -164363368 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 318 322 29 1 chr4 19925434 19925537 -164363125 + MIR SINE MIR 31 132 -76 22 0 0 0 chr4 19926571 19926593 -164362069 + AT_rich Low_complexity Low_complexity 1 22 0 304 265 71 10 chr4 19926968 19927066 -164361596 - MIR3 SINE MIR -8 200 97 201 121 0 0 chr4 19927103 19927136 -164361526 + (T)n Simple_repeat Simple_repeat 1 33 0 2621 52 0 3 chr4 19927296 19927604 -164361058 - AluY SINE Alu -4 307 1 256 206 109 11 chr4 19927931 19928023 -164360639 - L1ME LINE L1 -224 5897 5797 1474 173 33 43 chr4 19928109 19928409 -164360253 - AluJb SINE Alu -3 309 13 1222 173 26 68 chr4 19929006 19929272 -164359390 - AluJb SINE Alu -11 301 47 466 301 96 13 chr4 19929373 19929602 -164359060 + MIR SINE MIR 6 253 -9 198 293 24 49 chr4 19929731 19929813 -164358849 - L2 LINE L2 -258 3014 2935 666 253 13 7 chr4 19930008 19930162 -164358500 + MIR SINE MIR 100 254 -8 189 74 0 0 chr4 19930194 19930221 -164358441 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 270 360 0 0 chr4 19932143 19932229 -164356433 - L2 LINE L2 -85 3187 3102 200 283 0 0 chr4 19932288 19932334 -164356328 + (CA)n Simple_repeat Simple_repeat 2 47 0 464 330 58 9 chr4 19932922 19933167 -164355495 - MIR SINE MIR -10 252 3 241 150 0 0 chr4 19933180 19933220 -164355442 - MIR SINE MIR -118 144 105 1968 79 12 0 chr4 19933433 19933687 -164354975 - AluY SINE Alu -11 300 44 417 281 131 6 chr4 19933917 19934077 -164354585 - MER91A DNA MER1_type -13 183 4 2127 196 69 42 chr4 19934555 19935061 -164353601 - MLT2B1 LTR ERVL 0 520 1 192 413 22 11 chr4 19935227 19935319 -164353343 - L2 LINE L2 -38 3234 3142 378 285 82 86 chr4 19935448 19935974 -164352688 - L2 LINE L2 -191 3081 2548 232 204 0 0 chr4 19936578 19936622 -164352040 + L2 LINE L2 3262 3305 -8 265 293 73 0 chr4 19936882 19936964 -164351698 + MIR SINE MIR 63 150 -112 933 198 0 6 chr4 19937282 19937449 -164351213 + FRAM SINE Alu 1 164 -12 21 36 0 0 chr4 19938834 19938862 -164349800 + AT_rich Low_complexity Low_complexity 1 28 0 227 270 40 0 chr4 19938917 19938991 -164349671 - MER5A DNA MER1_type -59 130 54 22 56 0 0 chr4 19939003 19939039 -164349623 + AT_rich Low_complexity Low_complexity 1 36 0 1350 223 72 24 chr4 19939388 19939886 -164348776 - HsTC2 DNA Tc2 -103 1795 1274 34 24 0 0 chr4 19940075 19940116 -164348546 + AT_rich Low_complexity Low_complexity 1 41 0 810 196 60 10 chr4 19940256 19940455 -164348207 + L1MB7 LINE L1 5708 5916 -268 22 35 0 0 chr4 19940694 19940723 -164347939 + AT_rich Low_complexity Low_complexity 1 29 0 475 305 63 93 chr4 19940953 19941255 -164347407 - L3 LINE CR1 -111 1466 1174 301 282 49 55 chr4 19941761 19941924 -164346738 - L2 LINE L2 -21 3292 3131 259 245 0 0 chr4 19941924 19942004 -164346658 - MER63 DNA MER1_type -523 537 459 219 42 0 83 chr4 19942013 19942061 -164346601 + (TAAAAA)n Simple_repeat Simple_repeat 2 45 0 3172 193 51 24 chr4 19942181 19942434 -164346228 + MER63C DNA MER1_type 13 258 -802 2339 88 0 7 chr4 19942434 19942739 -164345923 + AluSx SINE Alu 1 303 -9 3172 193 51 24 chr4 19942739 19943269 -164345393 + MER63C DNA MER1_type 258 817 -113 2189 89 3 3 chr4 19943423 19943729 -164344933 + AluSq SINE Alu 1 306 0 450 290 15 8 chr4 19943925 19944056 -164344606 + MIR3 SINE MIR 70 201 -7 296 368 82 16 chr4 19944686 19944868 -164343794 + MIR SINE MIR 6 199 -63 588 228 24 130 chr4 19945073 19945319 -164343343 + MIR SINE MIR 21 240 -22 203 100 0 25 chr4 19945322 19945362 -164343300 + (CAT)n Simple_repeat Simple_repeat 3 41 0 519 228 0 0 chr4 19945378 19945558 -164343104 + (CAT)n Simple_repeat Simple_repeat 1 180 0 241 222 19 0 chr4 19946378 19946432 -164342230 + MER117 DNA MER1_type 1 55 -142 213 141 51 154 chr4 19946604 19946682 -164341980 + L2 LINE L2 2548 2617 -697 866 257 69 32 chr4 19947086 19947520 -164341142 - MLT1G1 LTR MaLR -83 512 1 313 313 68 45 chr4 19947733 19947909 -164340753 + MIR3 SINE MIR 20 199 -9 422 272 146 28 chr4 19948310 19948564 -164340098 - L2 LINE L2 -173 3140 2857 1859 139 0 26 chr4 19949086 19949395 -164339267 - AluSx SINE Alu -11 301 1 2283 96 3 3 chr4 19949413 19949714 -164338948 - AluSq SINE Alu -12 301 1 375 246 158 52 chr4 19950249 19950398 -164338264 - MLT1J2 LTR MaLR -80 366 234 2548 65 0 0 chr4 19950398 19950705 -164337957 + AluY SINE Alu 2 308 -3 375 246 158 52 chr4 19950705 19950827 -164337835 - MLT1J2 LTR MaLR -212 234 66 321 235 86 80 chr4 19950876 19951038 -164337624 + MER5A DNA MER1_type 2 164 -25 2416 106 3 0 chr4 19951693 19952005 -164336657 - AluSp SINE Alu 0 313 1 22 35 0 0 chr4 19952092 19952121 -164336541 + AT_rich Low_complexity Low_complexity 1 29 0 301 290 60 0 chr4 19952297 19952397 -164336265 - MIR SINE MIR -71 191 86 222 234 65 0 chr4 19952515 19952592 -164336070 - L2 LINE L2 -292 2980 2899 858 211 16 5 chr4 19952891 19953081 -164335581 + MER20 DNA MER1_type 28 219 0 277 297 54 54 chr4 19953685 19953833 -164334829 - MIR3 SINE MIR -3 205 58 219 88 0 0 chr4 19953973 19954007 -164334655 + (TG)n Simple_repeat Simple_repeat 1 34 0 415 252 36 36 chr4 19954374 19954513 -164334149 + MIR SINE MIR 123 261 -1 194 304 101 0 chr4 19954515 19954584 -164334078 + L2 LINE L2 3222 3297 -16 380 278 176 0 chr4 19955145 19955332 -164333330 + MIR SINE MIR 32 251 -11 587 216 22 8 chr4 19956122 19956256 -164332406 + MIR SINE MIR 79 214 -48 245 196 89 0 chr4 19956319 19956375 -164332287 - MIR SINE MIR -88 174 114 * 930 288 66 19 chr4 19956372 19957056 -164331606 - L2 LINE L2 -2 3311 2548 659 270 58 0 chr4 19957491 19957665 -164330997 + MIR SINE MIR 68 251 -11 585 238 54 36 chr4 19957731 19957899 -164330763 + MER58B DNA MER1_type 171 341 0 353 264 52 39 chr4 19957925 19958080 -164330582 - L1ME LINE L1 -600 5566 5410 235 179 60 15 chr4 19958091 19958158 -164330504 - Charlie1 DNA MER1_type -9 2752 2683 3724 195 95 18 chr4 19958159 19959243 -164329419 - Charlie1 DNA MER1_type -254 2507 39 263 189 153 9 chr4 19959273 19959384 -164329278 - L1ME LINE L1 -2382 5403 5277 21 0 0 0 chr4 19959385 19959406 -164329256 + AT_rich Low_complexity Low_complexity 1 21 0 228 128 77 0 chr4 19959614 19959692 -164328970 + (TA)n Simple_repeat Simple_repeat 1 84 0 297 0 0 0 chr4 19959819 19959852 -164328810 + (TG)n Simple_repeat Simple_repeat 2 34 0 21 82 0 0 chr4 19960021 19960070 -164328592 + AT_rich Low_complexity Low_complexity 1 49 0 4073 215 14 24 chr4 19960079 19961182 -164327480 - L1MA9 LINE L1 -38 6274 5184 25 31 0 0 chr4 19961185 19961217 -164327445 + AT_rich Low_complexity Low_complexity 1 32 0 547 279 117 6 chr4 19962132 19962311 -164326351 - MIR SINE MIR -7 255 57 1366 130 0 5 chr4 19962734 19962934 -164325728 - AluSg/x SINE Alu -2 308 110 495 283 53 16 chr4 19963086 19963273 -164325389 - MER63A DNA MER1_type -16 194 1 424 326 76 43 chr4 19963311 19963379 -164325283 + L2 LINE L2 2138 2202 -1112 270 0 0 0 chr4 19963379 19963409 -164325253 + (CA)n Simple_repeat Simple_repeat 2 31 0 424 326 76 43 chr4 19963409 19963641 -164325021 + L2 LINE L2 2202 2448 -866 454 343 49 25 chr4 19963888 19964092 -164324570 - MIR SINE MIR -27 235 27 501 326 136 41 chr4 19964881 19965716 -164322946 - L2 LINE L2 -3 3310 2362 433 298 55 37 chr4 19965743 19965961 -164322701 - L3 LINE CR1 -108 1469 1248 21 0 0 0 chr4 19966330 19966351 -164322311 + AT_rich Low_complexity Low_complexity 1 21 0 2287 67 3 0 chr4 19966441 19966761 -164321901 + AluY SINE Alu 1 321 0 311 361 68 35 chr4 19966822 19967188 -164321474 - L1ME LINE L1 -366 5755 5378 2199 89 0 20 chr4 19968226 19968529 -164320133 - AluSx SINE Alu -13 299 3 291 325 89 41 chr4 19968530 19968699 -164319963 + MIR SINE MIR 73 249 -13 205 189 0 0 chr4 19968840 19968877 -164319785 - MIR SINE MIR -4 258 222 1513 181 40 23 chr4 19970082 19970386 -164318276 - AluJo SINE Alu -3 309 1 2206 109 17 3 chr4 19970440 19970742 -164317920 + AluSx SINE Alu 2 307 -5 228 67 0 0 chr4 19970911 19970941 -164317721 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 220 342 13 0 chr4 19970954 19971030 -164317632 - L2 LINE L2 -40 3273 3197 291 209 75 0 chr4 19971418 19971485 -164317177 - MIR SINE MIR -25 237 166 242 313 16 0 chr4 19971515 19971579 -164317083 - MIR SINE MIR -189 73 9 225 256 77 26 chr4 19972516 19972594 -164316068 + L3 LINE CR1 1491 1572 -5 334 317 24 32 chr4 19973653 19973776 -164314886 - MIR SINE MIR -140 122 1 327 286 108 35 chr4 19974126 19974329 -164314333 + MIR SINE MIR 29 246 -16 180 111 0 0 chr4 19974427 19974454 -164314208 + (TG)n Simple_repeat Simple_repeat 2 28 0 222 288 144 0 chr4 19974503 19974614 -164314048 + MIR SINE MIR 121 247 -15 287 234 25 29 chr4 19974645 19974800 -164313862 + MIR SINE MIR 34 150 -112 2058 157 98 0 chr4 19974815 19975204 -164313458 + MSTB1 LTR MaLR 1 427 -5 248 304 57 44 chr4 19976502 19976729 -164311933 - MLT1H1 LTR MaLR -15 540 311 274 238 16 0 chr4 19976888 19976951 -164311711 - MLT1F LTR MaLR -459 83 20 242 377 150 0 chr4 19976997 19977164 -164311498 - MIR SINE MIR -13 249 58 300 303 197 19 chr4 19977462 19977670 -164310992 + MIR SINE MIR 10 254 -8 440 240 16 24 chr4 19978318 19978443 -164310219 - MER63 DNA MER1_type -85 751 2 1817 246 81 19 chr4 19978550 19979220 -164309442 + L1ME2 LINE L1 5447 6157 -7 350 294 55 0 chr4 19979297 19979406 -164309256 + MIR SINE MIR 37 151 -111 263 278 14 42 chr4 19979433 19979505 -164309157 - L2 LINE L2 -35 3237 3168 2240 99 0 0 chr4 19979517 19979810 -164308852 - AluSg SINE Alu -17 293 1 446 256 31 8 chr4 19979886 19980015 -164308647 - Charlie8 DNA MER1_type -2160 257 126 841 301 142 18 chr4 19980103 19980516 -164308146 - L2 LINE L2 0 3313 2838 2335 99 0 0 chr4 19980516 19980820 -164307842 + AluSc SINE Alu 1 304 -5 841 301 142 18 chr4 19980820 19980858 -164307804 - L2 LINE L2 -475 2838 2806 626 302 14 42 chr4 19982011 19982223 -164306439 + MIR SINE MIR 57 262 0 988 297 123 16 chr4 19982238 19982662 -164306000 - MLT1J LTR MaLR -4 507 39 867 288 115 39 chr4 19982775 19983157 -164305505 + L2 LINE L2 2535 2945 -369 317 243 75 26 chr4 19983180 19983296 -164305366 - MIR SINE MIR -87 121 3 2105 153 46 22 chr4 19983834 19984200 -164304462 - THE1C LTR MaLR 0 375 1 2316 102 0 19 chr4 19984219 19984532 -164304130 - AluSc SINE Alu -2 307 1 286 339 21 12 chr4 19984685 19984856 -164303806 - MIR SINE MIR -66 142 19 21 0 0 0 chr4 19984856 19984877 -164303785 + AT_rich Low_complexity Low_complexity 1 21 0 323 305 59 62 chr4 19984909 19985250 -164303412 - HAL1 LINE L1 -1532 975 636 228 70 35 35 chr4 19988158 19988215 -164300447 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 27 62 0 0 chr4 19988332 19988380 -164300282 + AT_rich Low_complexity Low_complexity 1 48 0 320 285 73 8 chr4 19989445 19989568 -164299094 + L2 LINE L2 3141 3271 -1 287 268 143 0 chr4 19989794 19989906 -164298756 + MIR SINE MIR 135 262 0 246 62 0 0 chr4 19990115 19990147 -164298515 + (CA)n Simple_repeat Simple_repeat 1 32 0 218 191 16 63 chr4 19991080 19991143 -164297519 + MIR SINE MIR 87 146 -62 326 309 13 54 chr4 19991378 19991527 -164297135 + MIR SINE MIR 118 260 -2 2106 92 17 17 chr4 19991541 19991834 -164296828 + AluSx SINE Alu 1 293 -19 199 250 250 64 chr4 19992209 19992349 -164296313 - MIR SINE MIR -58 204 39 216 0 0 0 chr4 19992586 19992610 -164296052 + (T)n Simple_repeat Simple_repeat 1 24 0 2628 39 0 19 chr4 19992668 19992980 -164295682 + AluY SINE Alu 1 306 -5 635 276 183 29 chr4 19993697 19994074 -164294588 + L2 LINE L2 2879 3313 0 195 42 0 0 chr4 19994872 19994896 -164293766 + (T)n Simple_repeat Simple_repeat 1 24 0 371 244 166 67 chr4 19995162 19995229 -164293433 + MER112 DNA MER1_type 1 60 -200 315 0 0 0 chr4 19995229 19995264 -164293398 + (CA)n Simple_repeat Simple_repeat 2 36 0 371 244 166 67 chr4 19995264 19995389 -164293273 + MER112 DNA MER1_type 60 212 -48 195 342 25 13 chr4 19995407 19995486 -164293176 - MIR3 SINE MIR -45 163 84 1037 258 87 88 chr4 19995915 19996469 -164292193 + MLT1H1 LTR MaLR 1 553 -2 595 236 40 40 chr4 19996557 19996731 -164291931 + MIR SINE MIR 89 262 0 225 378 35 35 chr4 19997218 19997390 -164291272 - L2 LINE L2 -9 3263 3092 2251 121 3 6 chr4 19997646 19997959 -164290703 + AluSq SINE Alu 1 312 -1 2230 106 10 7 chr4 19998130 19998431 -164290231 - AluSx SINE Alu -10 302 1 204 309 69 117 chr4 19998503 19998794 -164289868 - L2 LINE L2 -66 3206 2930 368 259 22 44 chr4 19999731 19999866 -164288796 - LTR67 LTR ERVL 0 557 426 2580 46 7 0 chr4 20000187 20000494 -164288168 + AluY SINE Alu 1 309 -2 365 293 8 30 chr4 20000938 20001071 -164287591 - MIR SINE MIR -13 249 120 1922 132 45 3 chr4 20001071 20001358 -164287304 + AluSx SINE Alu 1 299 -13 297 0 0 0 chr4 20001692 20001725 -164286937 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 302 80 20 0 chr4 20001724 20001774 -164286888 + (TA)n Simple_repeat Simple_repeat 1 51 0 200 274 0 32 chr4 20003152 20003214 -164285448 - MIR SINE MIR -38 224 165 256 158 0 0 chr4 20003222 20003260 -164285402 + MER1B DNA MER1_type 1 38 -299 * 1381 139 0 10 chr4 20003257 20003465 -164285197 + MER1B DNA MER1_type 134 339 0 193 29 59 0 chr4 20004606 20004640 -164284022 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 533 258 186 21 chr4 20005082 20005407 -164283255 - MLT1J2 LTR MaLR 0 450 77 752 266 15 5 chr4 20007400 20007603 -164281059 - MIR SINE MIR -40 222 18 254 335 103 46 chr4 20007939 20008133 -164280529 - L2 LINE L2 -24 3248 3044 327 340 82 19 chr4 20008159 20008365 -164280297 + MIR SINE MIR 33 251 -11 847 216 28 11 chr4 20009071 20009252 -164279410 + MLT1A2 LTR MaLR 4 187 -187 323 169 14 0 chr4 20009252 20009323 -164279339 + CT-rich Low_complexity Low_complexity 1 72 0 735 223 13 46 chr4 20009323 20009522 -164279140 + MLT1B LTR MaLR 173 374 -7 387 171 73 0 chr4 20009621 20009703 -164278959 + Charlie8 DNA MER1_type 189 276 -2141 22 0 0 0 chr4 20009889 20009911 -164278751 + AT_rich Low_complexity Low_complexity 1 22 0 719 150 150 0 chr4 20010112 20010232 -164278430 + FRAM SINE Alu 20 157 -19 373 276 131 0 chr4 20010497 20010642 -164278020 - MIR SINE MIR 0 262 99 931 55 0 0 chr4 20011597 20011706 -164276956 - THE1B LTR MaLR -255 109 1 299 288 27 55 chr4 20012934 20013080 -164275582 - L2 LINE L2 0 3313 3172 2500 55 0 3 chr4 20013382 20013692 -164274970 + AluY SINE Alu 1 309 -2 928 221 142 12 chr4 20013818 20014149 -164274513 - LTR37A LTR ERV1 0 426 53 994 167 5 21 chr4 20014408 20014600 -164274062 + MER53 DNA DNA 1 189 0 2501 64 0 10 chr4 20015204 20015517 -164273145 + AluY SINE Alu 1 310 -1 228 211 211 0 chr4 20016019 20016095 -164272567 + MIR SINE MIR 77 168 -94 482 291 0 0 chr4 20016176 20016303 -164272359 - MIR SINE MIR -56 206 80 2325 110 0 0 chr4 20016303 20016602 -164272060 - AluSg SINE Alu -11 299 1 2768 198 16 46 chr4 20016863 20017055 -164271607 - L1MC3 LINE L1 0 7785 7589 1234 197 53 4 chr4 20017055 20017283 -164271379 - MER8 DNA MER2_type 0 239 1 2768 198 16 46 chr4 20017283 20017697 -164270965 - L1MC3 LINE L1 -196 7589 7197 281 161 125 40 chr4 20017706 20017803 -164270859 - MLT1F1 LTR MaLR -383 166 35 788 183 37 12 chr4 20017803 20017967 -164270695 - L1MC3 LINE L1 -700 7085 6918 439 199 21 9 chr4 20017965 20018051 -164270611 - L1MC3 LINE L1 -1082 6703 6631 * 1605 164 29 4 chr4 20018051 20018346 -164270316 - AluJb SINE Alu 0 302 1 439 199 21 9 chr4 20018346 20018360 -164270302 - L1MC3 LINE L1 -1154 6631 6619 255 320 53 53 chr4 20018735 20018885 -164269777 + L2 LINE L2 2629 2778 -536 387 244 134 8 chr4 20018886 20019005 -164269657 - MER96 DNA MER1_type? 0 175 42 289 265 165 45 chr4 20019005 20019266 -164269396 + L2 LINE L2 2776 3063 -209 233 292 15 0 chr4 20019479 20019544 -164269118 - L2 LINE L2 -203 3069 3004 236 219 110 27 chr4 20019580 20019653 -164269009 - MER116 DNA Mariner -1 79 1 620 250 41 51 chr4 20019680 20019876 -164268786 - MIR SINE MIR -44 218 25 227 192 53 72 chr4 20020464 20020557 -164268105 + MIR SINE MIR 117 201 -7 285 192 0 0 chr4 20021404 20021456 -164267206 - MIR SINE MIR -161 101 50 340 211 105 0 chr4 20021988 20022064 -164266598 + MIR SINE MIR 154 237 -25 2243 106 0 0 chr4 20022780 20023082 -164265580 - AluSg SINE Alu -8 302 1 210 37 0 0 chr4 20023082 20023109 -164265553 + (TTG)n Simple_repeat Simple_repeat 2 28 0 781 233 135 47 chr4 20023716 20024034 -164264628 - MER7A DNA MER2_type -2 344 1 213 349 85 23 chr4 20024046 20024175 -164264487 + MIR SINE MIR 16 152 -110 483 213 130 53 chr4 20024305 20024401 -164264261 + MIR SINE MIR 69 156 -106 2086 123 3 10 chr4 20024401 20024709 -164263953 - AluSx SINE Alu -6 306 1 483 213 130 53 chr4 20024709 20024781 -164263881 + MIR SINE MIR 156 250 -12 509 189 6 63 chr4 20024920 20025079 -164263583 + L2 LINE L2 3164 3313 0 2178 113 0 3 chr4 20026733 20027024 -164261638 - AluSx SINE Alu -20 292 3 276 372 33 0 chr4 20027065 20027186 -164261476 + L2 LINE L2 3143 3267 -5 456 265 13 46 chr4 20027871 20028022 -164260640 - L2 LINE L2 -7 3306 3161 280 308 51 0 chr4 20029948 20030026 -164258636 - MIR SINE MIR -70 192 111 251 176 111 65 chr4 20030041 20030149 -164258513 + MIR3 SINE MIR 4 116 -92 23 54 0 0 chr4 20030232 20030269 -164258393 + AT_rich Low_complexity Low_complexity 1 37 0 730 270 87 93 chr4 20031155 20031640 -164257022 + L2 LINE L2 2832 3313 0 2181 112 0 3 chr4 20031708 20032004 -164256658 + AluSg SINE Alu 2 296 -14 281 325 133 0 chr4 20032015 20032135 -164256527 - L2 LINE L2 0 3272 3137 1337 192 192 6 chr4 20032282 20032626 -164256036 - MLT1C LTR MaLR -7 460 53 183 406 10 10 chr4 20033389 20033490 -164255172 + MIR SINE MIR 13 113 -149 207 309 128 38 chr4 20033777 20033834 -164254828 + L2 LINE L2 3024 3074 -239 2210 124 0 0 chr4 20033834 20034140 -164254522 + AluSx SINE Alu 1 306 -6 207 309 128 38 chr4 20034140 20034347 -164254315 + L2 LINE L2 3074 3312 -1 248 273 61 10 chr4 20034718 20034817 -164253845 - L3 LINE CR1 -294 1283 1180 264 346 0 0 chr4 20035424 20035502 -164253160 - MIR3 SINE MIR -17 191 114 * 461 240 32 55 chr4 20035493 20035660 -164253002 + MIR SINE MIR 44 212 -43 278 347 113 16 chr4 20035707 20035831 -164252831 - L2 LINE L2 -10 3262 3127 705 261 32 16 chr4 20036515 20036703 -164251959 - MIR SINE MIR -7 255 65 348 328 106 46 chr4 20036712 20037228 -164251434 + L2 LINE L2 2672 3223 -49 * 587 315 25 68 chr4 20037195 20037289 -164251373 + L2 LINE L2 2934 3030 -283 1061 192 37 28 chr4 20037289 20037503 -164251159 + MER20 DNA MER1_type 2 217 -2 587 315 25 68 chr4 20037503 20037805 -164250857 + L2 LINE L2 3030 3313 0 182 254 200 0 chr4 20038084 20038139 -164250523 - MIR3 SINE MIR -28 180 115 271 290 14 0 chr4 20038186 20038255 -164250407 - MIR SINE MIR -106 102 33 365 204 51 71 chr4 20038535 20038633 -164250029 - L2 LINE L2 -41 3231 3136 649 270 71 22 chr4 20038787 20039013 -164249649 - MIR SINE MIR 0 262 26 540 245 117 0 chr4 20039109 20039272 -164249390 - MIR SINE MIR -14 248 67 1097 193 32 16 chr4 20039273 20039522 -164249140 - L1MB7 LINE L1 -244 5940 5688 545 318 10 16 chr4 20039610 20039802 -164248860 + MIR SINE MIR 13 203 -59 2309 92 3 7 chr4 20040179 20040484 -164248178 - AluSg SINE Alu -6 304 1 855 188 0 20 chr4 20040487 20040636 -164248026 + AluJo/FRAM SINE Alu 166 311 -1 3354 128 23 2 chr4 20040662 20041147 -164247515 + MER1A DNA MER1_type 32 526 -3 573 258 35 76 chr4 20041456 20041770 -164246892 - L1ME4a LINE L1 -232 5889 5589 194 208 21 21 chr4 20041975 20042023 -164246639 - L2 LINE L2 0 3313 3266 1113 314 67 25 chr4 20042422 20043020 -164245642 - L2 LINE L2 -556 2758 2136 488 316 47 0 chr4 20043683 20043873 -164244789 + MIR SINE MIR 3 201 -61 22 80 0 0 chr4 20044029 20044079 -164244583 + AT_rich Low_complexity Low_complexity 1 50 0 2413 90 3 0 chr4 20044761 20045071 -164243591 + AluSq SINE Alu 1 311 -2 799 296 4 4 chr4 20045390 20045616 -164243046 + MIR SINE MIR 37 262 0 21 0 0 0 chr4 20046142 20046163 -164242499 + AT_rich Low_complexity Low_complexity 1 21 0 411 320 36 32 chr4 20047297 20047547 -164241115 + L1MC4a LINE L1 5589 5810 -360 2273 96 14 0 chr4 20047555 20047846 -164240816 + AluSx SINE Alu 1 295 -17 333 0 0 0 chr4 20047851 20047888 -164240774 + (CA)n Simple_repeat Simple_repeat 2 38 0 253 266 0 43 chr4 20047891 20047985 -164240677 + L1MC4 LINE L1 6614 6703 -1339 21 36 0 0 chr4 20048350 20048378 -164240284 + AT_rich Low_complexity Low_complexity 1 28 0 380 264 245 6 chr4 20050387 20050546 -164238116 - MIR SINE MIR 0 262 66 251 235 130 7 chr4 20050562 20050680 -164237982 + MIR SINE MIR 2 216 -46 345 47 0 0 chr4 20050880 20050923 -164237739 + (TG)n Simple_repeat Simple_repeat 2 44 0 405 0 0 0 chr4 20051238 20051283 -164237379 + (TG)n Simple_repeat Simple_repeat 1 45 0 2479 82 99 6 chr4 20051630 20051973 -164236689 + THE1C LTR MaLR 1 375 0 1107 137 0 23 chr4 20052151 20052326 -164236336 - AluSx SINE Alu -20 292 122 920 128 0 8 chr4 20052363 20052496 -164236166 - AluSx SINE Alu -181 132 1 304 299 19 78 chr4 20052675 20052829 -164235833 - MIR SINE MIR -51 211 67 333 305 13 58 chr4 20053043 20053200 -164235462 + MIR SINE MIR 2 151 -63 363 297 51 7 chr4 20053211 20053349 -164235313 - L2 LINE L2 0 3313 3170 336 253 0 0 chr4 20053377 20053452 -164235210 + MIR SINE MIR 178 252 -10 294 238 159 24 chr4 20053644 20053770 -164234892 + L2 LINE L2 3159 3301 -12 494 232 46 46 chr4 20057572 20057723 -164230939 + L2 LINE L2 3163 3313 0 1955 121 3 30 chr4 20057890 20058195 -164230467 - AluSx SINE Alu -15 297 1 202 197 291 39 chr4 20058672 20058799 -164229863 - MIR3 SINE MIR -31 177 19 420 20 0 0 chr4 20058805 20058854 -164229808 + (CA)n Simple_repeat Simple_repeat 1 49 0 2259 118 0 13 chr4 20059495 20059801 -164228861 + AluSx SINE Alu 1 302 -10 386 270 0 86 chr4 20061470 20061633 -164227029 + MIR SINE MIR 25 173 -89 221 258 15 0 chr4 20061683 20061749 -164226913 + (TGAA)n Simple_repeat Simple_repeat 2 68 0 186 305 23 62 chr4 20062076 20062204 -164226458 + L3b LINE CR1 1295 1417 -166 352 194 0 0 chr4 20062339 20062401 -164226261 - Alu SINE Alu 0 302 241 191 203 68 51 chr4 20062534 20062593 -164226069 - L2 LINE L2 0 3272 3213 527 197 16 25 chr4 20063536 20063658 -164225004 - MER53 DNA DNA -68 121 1 218 356 48 19 chr4 20063935 20064039 -164224623 - L2 LINE L2 -38 3234 3128 997 181 62 0 chr4 20064102 20064312 -164224350 + L1MA9 LINE L1 6058 6280 -32 2147 101 51 3 chr4 20064739 20065035 -164223627 - AluSg SINE Alu 0 310 1 201 339 122 17 chr4 20065284 20065399 -164223263 - L2 LINE L2 0 3272 3146 2042 134 0 0 chr4 20067532 20067824 -164220838 - AluSx SINE Alu -20 292 1 242 277 109 20 chr4 20068146 20068247 -164220415 + L2 LINE L2 3155 3264 -8 425 329 108 18 chr4 20069196 20069418 -164219244 + MIR SINE MIR 20 261 -1 264 358 0 0 chr4 20069467 20069534 -164219128 - MIR SINE MIR -105 103 37 2423 78 0 7 chr4 20069553 20069861 -164218801 + AluY SINE Alu 1 306 -5 2112 121 0 0 chr4 20069872 20070182 -164218480 + AluSx SINE Alu 1 310 0 261 83 0 0 chr4 20070890 20070926 -164217736 + (TTA)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chr4 20071096 20071124 -164217538 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr4 20071194 20071239 -164217423 + AT_rich Low_complexity Low_complexity 1 45 0 186 179 26 0 chr4 20072702 20072741 -164215921 - L2 LINE L2 0 3313 3274 485 256 74 17 chr4 20072882 20073058 -164215604 + MIR SINE MIR 74 259 -3 1320 237 97 25 chr4 20073058 20073489 -164215173 + MLT1C LTR MaLR 1 462 -5 271 304 152 27 chr4 20073526 20073638 -164215024 - MIR3 SINE MIR -15 193 68 361 324 22 50 chr4 20074389 20074568 -164214094 + MIR SINE MIR 81 254 -8 4051 180 57 28 chr4 20074714 20075507 -164213155 - L1MB7 LINE L1 -5 6179 5317 2205 108 0 0 chr4 20075507 20075802 -164212860 - AluSg SINE Alu -2 308 14 4051 180 57 28 chr4 20075802 20076413 -164212249 - L1MB7 LINE L1 -867 5317 4725 482 262 40 0 chr4 20076423 20076572 -164212090 + L2 LINE L2 2603 2757 -557 370 274 49 134 chr4 20078151 20078480 -164210182 - MER102b DNA MER1_type -4 337 37 233 281 67 56 chr4 20078554 20078643 -164210019 - L2 LINE L2 0 3272 3183 342 326 0 0 chr4 20078911 20079009 -164209653 - L2 LINE L2 -1 3312 3215 221 346 39 24 chr4 20079390 20079517 -164209145 + L2 LINE L2 3139 3267 -5 665 216 8 16 chr4 20079767 20079892 -164208770 - FLAM_A SINE Alu -9 124 1 2312 108 10 0 chr4 20081378 20081683 -164206979 - AluSx SINE Alu -4 308 1 2449 228 16 53 chr4 20081683 20081779 -164206883 + L1M4 LINE L1 2234 2332 -3814 1745 168 3 3 chr4 20081779 20082070 -164206592 + AluSx SINE Alu 1 291 -21 2449 228 16 53 chr4 20082070 20082764 -164205898 + L1M4 LINE L1 2332 2995 -3151 887 169 11 22 chr4 20083283 20083461 -164205201 - THE1B LTR MaLR 0 364 189 430 157 20 0 chr4 20083505 20083607 -164205055 + (TA)n Simple_repeat Simple_repeat 2 105 0 6996 116 12 39 chr4 20083607 20084723 -164203939 + Tigger1 DNA MER2_type 393 1478 -940 2191 118 7 0 chr4 20084723 20085020 -164203642 + AluSx SINE Alu 1 299 -13 617 228 113 80 chr4 20085020 20085331 -164203331 - HAL1b LINE L1 -879 469 149 1725 278 100 2 chr4 20085334 20086204 -164202458 + L2 LINE L2 2224 3184 -129 1889 177 74 5 chr4 20086551 20086930 -164201732 + L1MA9 LINE L1 5907 6311 -1 2002 115 0 4 chr4 20087165 20087435 -164201227 - AluSx SINE Alu -43 269 1 227 185 93 0 chr4 20087676 20087730 -164200932 - MIR SINE MIR -118 144 86 384 241 8 55 chr4 20087832 20088195 -164200467 + CT-rich Low_complexity Low_complexity 1 346 0 213 241 0 35 chr4 20088197 20088255 -164200407 + C-rich Low_complexity Low_complexity 1 56 0 432 207 24 30 chr4 20088256 20088420 -164200242 + CT-rich Low_complexity Low_complexity 3 165 0 225 307 111 41 chr4 20089061 20089285 -164199377 - L2 LINE L2 -270 3002 2763 348 340 20 7 chr4 20090209 20090356 -164198306 + MLT1K LTR MaLR 22 170 -418 340 189 22 56 chr4 20090589 20090679 -164197983 + MLT1K LTR MaLR 485 571 -17 427 290 21 11 chr4 20091035 20091280 -164197382 + MER41B LTR ERV1 51 430 -205 183 217 33 50 chr4 20091682 20091742 -164196920 - L2 LINE L2 -568 2746 2688 879 130 18 6 chr4 20092047 20092216 -164196446 + GA-rich Low_complexity Low_complexity 3 173 0 227 314 123 34 chr4 20093358 20093562 -164195100 - L2 LINE L2 -405 2909 2688 207 100 0 0 chr4 20093846 20093876 -164194786 + (TCTCC)n Simple_repeat Simple_repeat 5 34 0 241 65 0 0 chr4 20094066 20094097 -164194565 + MLT1C LTR MaLR 389 419 -48 241 254 116 89 chr4 20094160 20094384 -164194278 - MER102b DNA MER1_type -9 332 103 1810 278 139 34 chr4 20094432 20095468 -164193194 - L2 LINE L2 -36 3277 2132 1391 293 41 24 chr4 20095468 20095976 -164192686 - L2 LINE L2 -2097 1217 701 336 246 310 0 chr4 20095982 20096124 -164192538 - MER5A DNA MER1_type -2 187 2 190 267 0 0 chr4 20096135 20096180 -164192482 - L2 LINE L2 -2612 702 658 419 297 10 74 chr4 20096260 20096462 -164192200 - MER5A DNA MER1_type 0 189 1 464 246 66 0 chr4 20096481 20096603 -164192059 + MIR SINE MIR 77 206 -56 195 256 39 39 chr4 20096739 20096817 -164191845 - MIR SINE MIR -12 250 173 1317 197 126 19 chr4 20097054 20097672 -164190990 + LTR50 LTR ERVL 1 779 -16 294 29 0 0 chr4 20097674 20097709 -164190953 + (TC)n Simple_repeat Simple_repeat 1 35 0 180 0 0 0 chr4 20097708 20097728 -164190934 + (CA)n Simple_repeat Simple_repeat 1 20 0 * 208 288 41 65 chr4 20098000 20098170 -164190492 + L2 LINE L2 3088 3253 -60 2317 154 55 13 chr4 20098171 20098625 -164190037 + Charlie4a DNA MER1_type 1 473 -35 1288 217 67 9 chr4 20098625 20098970 -164189692 + L1M4 LINE L1 4955 5319 -827 442 74 0 0 chr4 20099070 20099124 -164189538 + Tigger4(Zombi) DNA MER2_type 2678 2731 0 1350 168 50 50 chr4 20099245 20099567 -164189095 + MER33 DNA MER1_type 2 323 -1 208 250 0 0 chr4 20099749 20099793 -164188869 + MIR SINE MIR 195 238 -24 829 284 29 16 chr4 20100195 20100438 -164188224 - MIR SINE MIR -9 253 8 345 272 136 43 chr4 20100733 20100800 -164187862 + L2 LINE L2 3113 3172 -141 183 42 0 0 chr4 20100800 20100824 -164187838 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 345 272 136 43 chr4 20100824 20100940 -164187722 + L2 LINE L2 3172 3313 0 187 238 24 0 chr4 20100946 20100988 -164187674 - L2 LINE L2 -19 3253 3211 200 290 45 71 chr4 20101303 20101458 -164187204 - L2 LINE L2 -213 3059 2909 247 324 10 10 chr4 20102159 20102261 -164186401 - L3 LINE CR1 -161 1416 1315 194 228 89 79 chr4 20102294 20102395 -164186267 + MIR SINE MIR 44 145 -117 1997 125 3 10 chr4 20102801 20103104 -164185558 - L1MA5 LINE L1 -2 6298 5998 375 193 0 0 chr4 20104557 20104640 -164184022 + CT-rich Low_complexity Low_complexity 2 84 0 183 227 213 13 chr4 20105363 20105438 -164183224 + MIR SINE MIR 26 115 -147 1678 231 58 22 chr4 20105678 20106124 -164182538 + MLT1C LTR MaLR 6 467 0 339 345 81 39 chr4 20106125 20106625 -164182037 + L2 LINE L2 2730 3272 0 1244 167 50 0 chr4 20106882 20107080 -164181582 + AluJb SINE Alu 86 293 -19 657 247 96 58 chr4 20107195 20107260 -164181402 - L1MC4a LINE L1 -1884 5924 5863 2357 70 0 0 chr4 20107260 20107545 -164181117 + AluY SINE Alu 1 285 -26 657 247 96 58 chr4 20107545 20107771 -164180891 - L1MC4a LINE L1 -1945 5863 5622 6518 121 23 0 chr4 20107992 20108989 -164179673 + L1MA9 LINE L1 5293 6312 0 2162 118 0 13 chr4 20109286 20109599 -164179063 + AluSc SINE Alu 1 309 0 254 261 0 14 chr4 20109987 20110056 -164178606 + L1ME LINE L1 5597 5664 -457 239 154 0 19 chr4 20110131 20110183 -164178479 + (TA)n Simple_repeat Simple_repeat 1 51 0 225 67 0 0 chr4 20110191 20110236 -164178426 + LTR66 LTR ERVL 394 438 -172 345 109 0 0 chr4 20110236 20110291 -164178371 + (GA)n Simple_repeat Simple_repeat 1 55 0 3336 130 8 12 chr4 20110405 20110913 -164177749 - L1PA16 LINE L1 -9 6157 5652 2865 95 3 0 chr4 20110913 20111277 -164177385 - L1PB1 LINE L1 0 6151 5782 2675 137 24 18 chr4 20111287 20111971 -164176691 - L1PB1 LINE L1 -498 5668 4983 192 40 0 0 chr4 20112031 20112056 -164176606 + (CA)n Simple_repeat Simple_repeat 2 26 0 245 73 0 24 chr4 20112212 20112253 -164176409 + (TC)n Simple_repeat Simple_repeat 1 40 0 21 0 0 0 chr4 20112458 20112479 -164176183 + AT_rich Low_complexity Low_complexity 1 21 0 279 271 42 8 chr4 20112492 20112610 -164176052 + L1ME LINE L1 5720 5841 -280 775 332 54 55 chr4 20112621 20113170 -164175492 - L2 LINE L2 0 3272 2724 238 78 20 20 chr4 20113170 20113221 -164175441 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 1785 150 26 0 chr4 20113229 20113495 -164175167 - AluSx SINE Alu -37 275 3 775 332 54 55 chr4 20113495 20113630 -164175032 - L2 LINE L2 -555 2717 2580 1761 211 114 13 chr4 20113704 20114337 -164174325 - L1MCb LINE L1 -3939 2806 2073 * 4266 186 33 8 chr4 20114336 20115213 -164173449 - L1PB4 LINE L1 -1116 5030 4132 1719 161 43 2 chr4 20115211 20115663 -164172999 + L1PB4 LINE L1 5017 5479 -677 * 5258 94 12 1 chr4 20115663 20116355 -164172307 - L1PA10 LINE L1 -5 6163 5465 4058 149 32 11 chr4 20116358 20117021 -164171641 + L1PB4 LINE L1 5480 6156 0 3766 214 100 18 chr4 20117022 20118563 -164170099 - L1MCb LINE L1 -4490 2074 411 394 244 0 0 chr4 20118563 20118641 -164170021 + MER20 DNA MER1_type 141 218 -1 414 330 57 14 chr4 20118644 20118853 -164169809 - L2 LINE L2 -731 2583 2366 243 125 0 0 chr4 20118994 20119034 -164169628 + (TG)n Simple_repeat Simple_repeat 1 40 0 2173 125 0 0 chr4 20119179 20119475 -164169187 - AluSx SINE Alu -16 296 1 229 274 0 0 chr4 20119583 20119634 -164169028 + (TG)n Simple_repeat Simple_repeat 2 52 0 1106 283 61 23 chr4 20119813 20120205 -164168457 + MLT1I LTR MaLR 3 409 0 832 240 64 0 chr4 20120205 20120409 -164168253 - MIR SINE MIR -10 252 36 2465 97 0 0 chr4 20121048 20121356 -164167306 - AluSq SINE Alu -5 308 1 1367 178 90 90 chr4 20121615 20121904 -164166758 - MLT1A1 LTR MaLR 0 365 74 2409 82 0 3 chr4 20121904 20122208 -164166454 + AluY SINE Alu 3 305 -6 1367 178 90 90 chr4 20122208 20122283 -164166379 - MLT1A1 LTR MaLR -290 75 1 247 353 33 27 chr4 20122406 20122556 -164166106 + L2 LINE L2 2932 3082 -190 1744 102 4 0 chr4 20123165 20123390 -164165272 - AluSp SINE Alu -85 228 3 199 81 0 108 chr4 20123468 20123505 -164165157 - MIR SINE MIR -10 252 220 477 252 113 0 chr4 20125407 20125566 -164163096 - MIR SINE MIR 0 262 86 2950 94 11 3 chr4 20125839 20126211 -164162451 + THE1C LTR MaLR 1 375 0 4364 77 3 19 chr4 20126573 20127147 -164161515 + L1PB2 LINE L1 5587 6151 0 766 196 30 12 chr4 20127285 20127453 -164161209 + MER104 DNA Tc2 6 176 -4 316 367 61 0 chr4 20127502 20127600 -164161062 - L2 LINE L2 -16 3256 3153 385 170 170 11 chr4 20128129 20128223 -164160439 + MER5A DNA MER1_type 4 112 -77 192 97 0 0 chr4 20128841 20128872 -164159790 + (TTG)n Simple_repeat Simple_repeat 2 32 0 1422 204 25 4 chr4 20128877 20129151 -164159511 - AluJb SINE Alu -30 282 3 704 163 98 0 chr4 20129152 20129275 -164159387 - AluJb SINE Alu -176 136 2 2050 133 0 3 chr4 20129288 20129595 -164159067 - AluSx SINE Alu 0 306 1 285 261 36 18 chr4 20129790 20129901 -164158761 + MER113 DNA MER1_type? 8 120 -401 21 36 0 0 chr4 20129950 20129978 -164158684 + AT_rich Low_complexity Low_complexity 1 28 0 1425 212 8 79 chr4 20130077 20130569 -164158093 - L1MC4 LINE L1 0 7808 7347 1151 197 62 97 chr4 20130606 20130914 -164157748 + L1MC4 LINE L1 6842 7130 -912 1942 146 10 10 chr4 20130914 20131215 -164157447 + AluSx SINE Alu 4 304 -8 1151 197 62 97 chr4 20131215 20131372 -164157290 + L1MC4 LINE L1 7130 7291 -751 413 319 7 22 chr4 20131427 20131565 -164157097 + MER5A DNA MER1_type 54 189 0 21 0 0 0 chr4 20132640 20132661 -164156001 + AT_rich Low_complexity Low_complexity 1 21 0 527 276 102 30 chr4 20132675 20132906 -164155756 - MIR SINE MIR -4 258 14 463 220 76 34 chr4 20133121 20133239 -164155423 + L2 LINE L2 3175 3297 -16 745 277 85 0 chr4 20133924 20134112 -164154550 + MER63A DNA MER1_type 2 205 -5 321 238 36 0 chr4 20134400 20134484 -164154178 + MIR SINE MIR 70 156 -106 234 0 0 0 chr4 20134550 20134576 -164154086 + (T)n Simple_repeat Simple_repeat 1 26 0 2595 139 35 2 chr4 20134580 20134983 -164153679 - LTR45B LTR ERV1 -71 418 3 372 238 38 38 chr4 20134983 20135088 -164153574 + MIR SINE MIR 155 259 -3 215 139 0 23 chr4 20135619 20135662 -164153000 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 397 272 238 19 chr4 20135799 20136206 -164152456 + L2 LINE L2 2624 3130 -183 2531 200 95 25 chr4 20137416 20138057 -164150605 - MER76 LTR ERV -2 686 1 438 325 13 20 chr4 20138058 20138209 -164150453 + L2 LINE L2 3163 3312 -1 2272 119 0 6 chr4 20139720 20140032 -164148630 - AluSq SINE Alu -3 310 1 368 348 83 43 chr4 20140075 20140472 -164148190 - L3 LINE CR1 -884 693 281 180 237 165 41 chr4 20140495 20140592 -164148070 - MIR3 SINE MIR -19 189 81 448 192 0 0 chr4 20140795 20140873 -164147789 + MER20 DNA MER1_type 112 189 -30 285 230 0 0 chr4 20141105 20141179 -164147483 + (CA)n Simple_repeat Simple_repeat 2 75 0 1160 189 38 9 chr4 20141396 20141608 -164147054 + MER20 DNA MER1_type 1 218 -1 248 327 6 42 chr4 20141786 20141951 -164146711 + L1MEc LINE L1 1921 2079 -4317 587 71 12 0 chr4 20141960 20142045 -164146617 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 2236 122 55 12 chr4 20142061 20142404 -164146258 + THE1B LTR MaLR 1 358 -6 638 156 40 0 chr4 20142421 20142594 -164146068 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 315 259 61 41 chr4 20142635 20142782 -164145880 + L1MEc LINE L1 2181 2330 -4066 497 290 90 25 chr4 20142860 20143060 -164145602 - MIR SINE MIR -43 219 7 304 294 34 42 chr4 20143240 20143359 -164145303 - LTR67 LTR ERVL -11 546 429 201 39 0 0 chr4 20144094 20144120 -164144542 + (CA)n Simple_repeat Simple_repeat 2 27 0 207 0 0 0 chr4 20145066 20145089 -164143573 + (A)n Simple_repeat Simple_repeat 1 23 0 686 201 71 19 chr4 20145698 20145852 -164142810 - MIR SINE MIR -34 228 67 1386 162 64 29 chr4 20145872 20146313 -164142349 - LTR54 LTR ERV1 0 403 1 706 200 36 0 chr4 20146865 20147005 -164141657 - MER5A DNA MER1_type -44 145 1 2161 122 0 10 chr4 20147470 20147773 -164140889 - AluJb SINE Alu -12 300 1 2693 142 5 10 chr4 20148077 20148487 -164140175 - L1PA16 LINE L1 0 6166 5759 255 160 20 20 chr4 20148920 20148970 -164139692 - L2 LINE L2 -8 3264 3215 482 119 24 0 chr4 20149419 20149503 -164139159 - L1MA10 LINE L1 0 6334 6249 196 242 48 16 chr4 20149595 20149657 -164139005 - L2 LINE L2 -1045 2269 2206 186 298 21 0 chr4 20149643 20149690 -164138972 + MIR SINE MIR 8 55 -207 * 314 333 106 8 chr4 20149743 20149866 -164138796 + L2 LINE L2 3119 3253 -19 242 302 10 62 chr4 20149968 20150064 -164138598 - L2 LINE L2 -175 3097 3007 492 284 135 62 chr4 20150357 20150808 -164137854 - MLT1J LTR MaLR -23 488 5 201 186 0 0 chr4 20151016 20151044 -164137618 + CT-rich Low_complexity Low_complexity 2 32 -12 2125 138 3 0 chr4 20151044 20151340 -164137322 - AluSx SINE Alu -15 297 1 201 186 0 0 chr4 20151340 20151354 -164137308 + CT-rich Low_complexity Low_complexity 31 44 0 223 175 0 0 chr4 20151754 20151794 -164136868 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 443 316 76 99 chr4 20151827 20152491 -164136171 - L2 LINE L2 -58 3214 2553 263 315 28 9 chr4 20152703 20152811 -164135851 - MIR SINE MIR -125 137 28 387 241 65 80 chr4 20153194 20153393 -164135269 + MIR SINE MIR 49 244 -18 524 219 34 0 chr4 20153417 20153536 -164135126 + MER94 DNA DNA 4 126 -8 458 277 36 0 chr4 20153841 20153978 -164134684 - MIR3 SINE MIR -7 201 60 410 274 43 0 chr4 20154670 20154787 -164133875 - MIR SINE MIR -74 188 67 257 293 113 0 chr4 20154835 20154941 -164133721 + MIR SINE MIR 18 135 -73 357 279 0 0 chr4 20155076 20155162 -164133500 + MIR SINE MIR 156 241 -21 329 268 58 58 chr4 20155465 20155603 -164133059 + MIR SINE MIR 46 183 -79 182 261 114 45 chr4 20156163 20156251 -164132411 + MIR SINE MIR 22 115 -147 208 324 29 39 chr4 20156582 20156605 -164132057 + L2 LINE L2 2947 2969 -303 1874 163 64 14 chr4 20156605 20156949 -164131713 + MLT1A1 LTR MaLR 5 365 0 208 324 29 39 chr4 20156949 20157027 -164131635 + L2 LINE L2 2969 3047 -225 328 268 62 9 chr4 20157054 20157166 -164131496 + MIR SINE MIR 18 135 -73 802 230 73 90 chr4 20158116 20158422 -164130240 - Tigger8 DNA MER2_type -5 661 364 2561 63 0 3 chr4 20158422 20158725 -164129937 - AluY SINE Alu -9 302 1 802 230 73 90 chr4 20158725 20158883 -164129779 - Tigger8 DNA MER2_type -302 364 205 3399 139 28 15 chr4 20158944 20159478 -164129184 + L1PB4 LINE L1 5616 6156 0 524 309 68 19 chr4 20159572 20159779 -164128883 - Tigger8 DNA MER2_type -425 241 25 1839 149 17 17 chr4 20159795 20160097 -164128565 + AluSx SINE Alu 6 307 -5 192 306 0 0 chr4 20160454 20160503 -164128159 - L2 LINE L2 -5 3267 3219 257 280 44 110 chr4 20160516 20160698 -164127964 + L2 LINE L2 2994 3163 -109 1543 221 17 34 chr4 20160713 20161070 -164127592 + MLT1A1 LTR MaLR 1 351 -14 231 188 0 0 chr4 20161151 20161199 -164127463 + GA-rich Low_complexity Low_complexity 1 48 0 1752 243 61 73 chr4 20161205 20161769 -164126893 + MLT1E LTR MaLR 1 501 -4 1075 8 40 8 chr4 20162330 20162449 -164126213 - L1P1 LINE L1 -499 5656 5533 3465 38 10 2 chr4 20162449 20162841 -164125821 + L1PA4 LINE L1 5750 6152 -3 238 313 26 17 chr4 20164057 20164172 -164124490 - L2 LINE L2 -816 2498 2383 565 252 26 32 chr4 20164422 20164577 -164124085 - L2 LINE L2 0 3313 3160 785 274 108 48 chr4 20164811 20165245 -164123417 + MLT1L LTR MaLR 156 615 0 2419 77 0 10 chr4 20165284 20165596 -164123066 + AluSc SINE Alu 1 309 0 335 286 86 0 chr4 20165605 20165780 -164122882 - L2 LINE L2 -303 3010 2821 270 233 0 55 chr4 20166528 20166601 -164122061 + L3 LINE CR1 898 966 -611 3897 139 12 47 chr4 20166713 20167391 -164121271 - L1MA10 LINE L1 0 6334 5681 1292 122 16 5 chr4 20168211 20168399 -164120263 - AluSp SINE Alu -16 297 108 309 100 0 0 chr4 20168401 20168441 -164120221 - L1PA11 LINE L1 -67 6107 6068 529 73 0 0 chr4 20168441 20168506 -164120156 + L1PA11 LINE L1 6104 6171 -3 615 193 52 62 chr4 20169322 20169514 -164119148 - MER112 DNA MER1_type -4 256 67 23 0 0 0 chr4 20170336 20170359 -164118303 + AT_rich Low_complexity Low_complexity 1 23 0 514 328 50 17 chr4 20170508 20170749 -164117913 + MIR SINE MIR 8 256 -6 354 256 70 31 chr4 20170997 20171126 -164117536 - MIR3 SINE MIR -67 141 8 189 0 0 0 chr4 20171748 20171769 -164116893 + (TG)n Simple_repeat Simple_repeat 2 22 0 198 0 0 0 chr4 20172617 20172639 -164116023 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1478 172 0 47 chr4 20172641 20172937 -164115725 - AluJo SINE Alu -30 282 1 765 319 95 11 chr4 20172964 20173343 -164115319 + LTR67 LTR ERVL 33 443 -114 251 281 49 12 chr4 20173344 20173426 -164115236 + MIR SINE MIR 130 214 -48 470 252 13 96 chr4 20173787 20174017 -164114645 + L1ME4a LINE L1 5835 6045 -76 22 0 0 0 chr4 20174082 20174104 -164114558 + AT_rich Low_complexity Low_complexity 1 22 0 2075 106 32 0 chr4 20174370 20174652 -164114010 - AluSx SINE Alu -21 291 1 275 330 153 0 chr4 20175557 20175675 -164112987 - MIR3 SINE MIR -65 143 8 256 368 34 39 chr4 20175950 20176154 -164112508 + MIR3 SINE MIR 4 206 -2 582 273 99 67 chr4 20176305 20176464 -164112198 - L1MC5 LINE L1 -44 7998 7846 2985 115 14 18 chr4 20176464 20176908 -164111754 - L1PB3 LINE L1 -2 6152 5711 582 273 99 67 chr4 20176908 20177629 -164111033 - L1MC5 LINE L1 -196 7846 7101 2304 81 7 10 chr4 20178392 20178687 -164109975 - AluSx SINE Alu -14 298 5 209 286 112 31 chr4 20178838 20178936 -164109726 + MIR SINE MIR 32 137 -71 732 204 38 5 chr4 20180463 20180649 -164108013 - L1MA4 LINE L1 0 6300 6109 298 331 53 8 chr4 20180909 20181042 -164107620 + L2 LINE L2 3125 3263 -9 189 346 39 0 chr4 20181153 20181231 -164107431 - MIR SINE MIR -98 110 30 239 241 63 0 chr4 20181327 20181406 -164107256 + MER103 DNA DNA 82 165 -1 1863 207 49 51 chr4 20181501 20181988 -164106674 + MLT1D LTR MaLR 20 505 0 194 109 65 87 chr4 20182602 20182648 -164106014 + L2 LINE L2 3269 3313 0 316 304 22 43 chr4 20182690 20182828 -164105834 - MIR SINE MIR -120 142 8 626 175 7 91 chr4 20183172 20183315 -164105347 - MER94 DNA DNA -3 131 1 627 260 7 13 chr4 20183405 20183559 -164105103 + MLT1F1 LTR MaLR 3 155 -438 896 182 6 0 chr4 20183574 20183744 -164104918 - MER53 DNA DNA -4 185 15 2717 150 27 23 chr4 20183772 20184246 -164104416 - L1MB2 LINE L1 -18 6153 5678 1378 218 110 5 chr4 20184247 20184693 -164103969 - L1 LINE L1 -2670 3476 2984 306 77 0 0 chr4 20184693 20184732 -164103930 - MER53 DNA DNA -150 39 1 1216 271 90 6 chr4 20184763 20185129 -164103533 + MLT1F1 LTR MaLR 171 567 0 514 205 18 18 chr4 20185652 20185764 -164102898 - L1ME LINE L1 -394 5727 5616 25 31 0 0 chr4 20186003 20186035 -164102627 + AT_rich Low_complexity Low_complexity 1 32 0 308 345 50 47 chr4 20187153 20187411 -164101251 + L1ME LINE L1 4964 5222 -924 413 289 54 82 chr4 20187446 20187740 -164100922 + L1ME LINE L1 5265 5550 -571 306 209 30 0 chr4 20187864 20187931 -164100731 + L1ME4a LINE L1 6047 6115 -6 1985 140 3 0 chr4 20188206 20188506 -164100156 - AluSx SINE Alu -11 301 1 344 280 38 45 chr4 20188523 20188680 -164099982 + MIR SINE MIR 57 212 -50 2272 116 0 3 chr4 20189668 20189979 -164098683 + AluSx SINE Alu 1 310 -2 684 242 121 20 chr4 20189991 20190288 -164098374 - MER46C DNA MER2_type -6 332 6 260 252 151 8 chr4 20190775 20190894 -164097768 - MIR3 SINE MIR -68 140 5 1994 147 0 0 chr4 20191507 20191792 -164096870 - AluSx SINE Alu -27 285 1 2176 247 49 22 chr4 20192111 20192991 -164095671 - L1M4c LINE L1 -2123 4259 3356 23 0 0 0 chr4 20192998 20193021 -164095641 + AT_rich Low_complexity Low_complexity 1 23 0 471 247 41 62 chr4 20193053 20193357 -164095305 - L1M4c LINE L1 -4013 2550 2254 9949 85 8 9 chr4 20193357 20195509 -164093153 + L1PA7 LINE L1 3995 6143 -11 471 247 41 62 chr4 20195509 20195572 -164093090 - L1M4c LINE L1 -4309 2254 2191 48 60 0 0 chr4 20195720 20195803 -164092859 + AT_rich Low_complexity Low_complexity 1 83 0 4109 209 22 0 chr4 20195859 20196676 -164091986 + L1PA12 LINE L1 1 835 -6746 4851 114 6 0 chr4 20196676 20197396 -164091266 + L1PA14 LINE L1 5435 6158 -3 1050 323 38 14 chr4 20197401 20198036 -164090626 - L1M4c LINE L1 -4568 1995 1204 347 284 20 10 chr4 20198057 20198159 -164090503 - MIR SINE MIR -3 259 157 1075 273 53 28 chr4 20198219 20198406 -164090256 + MLT1J1 LTR MaLR 41 222 -224 1528 186 0 58 chr4 20198406 20198717 -164089945 + AluJo SINE Alu 19 311 -1 1075 273 53 28 chr4 20198717 20198925 -164089737 + MLT1J1 LTR MaLR 222 446 0 353 323 8 23 chr4 20198950 20199083 -164089579 - MIR SINE MIR -121 141 11 198 255 226 29 chr4 20199321 20199423 -164089239 - MIR SINE MIR -37 225 104 229 283 17 17 chr4 20199450 20199510 -164089152 + L2 LINE L2 3201 3260 -12 357 234 113 10 chr4 20201439 20201562 -164087100 - MIR SINE MIR -67 141 34 329 276 71 0 chr4 20202705 20202803 -164085859 - MIR SINE MIR -58 204 100 313 257 92 46 chr4 20202814 20202923 -164085739 - MIR SINE MIR -1 261 148 180 253 88 77 chr4 20202967 20203058 -164085604 - L2 LINE L2 -2902 412 321 310 275 25 0 chr4 20203236 20203326 -164085336 + MIR SINE MIR 64 143 -65 1760 236 43 52 chr4 20203590 20204170 -164084492 + MLT1E2 LTR MaLR 52 626 0 269 329 69 4 chr4 20204170 20204399 -164084263 - LTR33A LTR ERVL -11 512 269 255 288 105 26 chr4 20204659 20205003 -164083659 - L1M4 LINE L1 -3664 2482 2112 2141 133 36 25 chr4 20205322 20205682 -164082980 + THE1B LTR MaLR 1 364 0 10591 95 7 11 chr4 20205707 20205767 -164082895 + THE1B-int LTR MaLR 64 123 -1457 2189 81 41 14 chr4 20205767 20206062 -164082600 + AluY SINE Alu 1 303 -8 10591 95 7 11 chr4 20206062 20207524 -164081138 + THE1B-int LTR MaLR 123 1580 0 2041 142 31 25 chr4 20207526 20207886 -164080776 + THE1B LTR MaLR 3 364 0 23 0 0 0 chr4 20208164 20208187 -164080475 + AT_rich Low_complexity Low_complexity 1 23 0 313 295 96 0 chr4 20208257 20208413 -164080249 - L1ME3A LINE L1 -294 5876 5706 1892 145 46 25 chr4 20208427 20208793 -164079869 - THE1C LTR MaLR 0 375 2 2022 142 0 3 chr4 20208979 20209267 -164079395 + AluSx SINE Alu 1 287 -25 336 314 78 16 chr4 20209296 20209541 -164079121 + HAL1 LINE L1 590 849 -1658 325 248 61 71 chr4 20209797 20209995 -164078667 + MLT1H LTR MaLR 117 312 -237 333 214 95 71 chr4 20210116 20210242 -164078420 + HAL1 LINE L1 2094 2222 -285 383 310 76 0 chr4 20210336 20210481 -164078181 + MLT1J LTR MaLR 28 183 -328 1088 60 0 0 chr4 20210502 20210636 -164078026 - AluY SINE Alu -14 297 164 311 280 8 8 chr4 20210844 20210976 -164077686 + HAL1 LINE L1 2267 2398 -109 308 336 29 7 chr4 20211711 20211848 -164076814 - MIR3 SINE MIR 0 208 69 23 0 0 0 chr4 20212034 20212057 -164076605 + AT_rich Low_complexity Low_complexity 1 23 0 1812 132 10 0 chr4 20212058 20212346 -164076316 - L1PA13 LINE L1 -9 6154 5864 590 308 61 66 chr4 20212614 20213254 -164075408 - L2 LINE L2 -872 2442 1806 2733 93 3 3 chr4 20213257 20213621 -164075041 - THE1B LTR MaLR 0 364 1 647 327 118 14 chr4 20213847 20214211 -164074451 + L3 LINE CR1 958 1359 -218 302 326 182 0 chr4 20214330 20214462 -164074200 - L2 LINE L2 -5 3267 3112 228 184 0 0 chr4 20215183 20215232 -164073430 + (TG)n Simple_repeat Simple_repeat 2 50 0 2569 121 5 0 chr4 20215500 20215873 -164072789 + THE1C LTR MaLR 1 375 0 280 358 156 0 chr4 20218293 20218402 -164070260 + L2 LINE L2 3129 3254 -18 445 323 32 0 chr4 20218413 20218568 -164070094 + MIR SINE MIR 32 191 -71 2514 39 0 13 chr4 20220528 20220833 -164067829 + AluY SINE Alu 1 301 -10 713 232 171 37 chr4 20221238 20221699 -164066963 + L1MDa LINE L1 1085 1607 -4933 * 1003 219 117 6 chr4 20221696 20222039 -164066623 + L1M4 LINE L1 3475 3855 -2291 1021 167 84 152 chr4 20222041 20222523 -164066139 + MLT2D LTR ERVL 1 512 -8 2614 254 33 9 chr4 20222524 20222647 -164066015 + L1M4 LINE L1 3844 3963 -2183 2598 111 0 11 chr4 20222647 20223015 -164065647 + THE1B LTR MaLR 1 364 0 2614 254 33 9 chr4 20223015 20223239 -164065423 + L1M4 LINE L1 3963 4180 -1966 2402 81 7 0 chr4 20223239 20223535 -164065127 - AluSc SINE Alu -11 298 1 2614 254 33 9 chr4 20223535 20224083 -164064579 + L1M4 LINE L1 4180 4762 -1384 845 149 144 45 chr4 20225030 20225231 -164063431 - ORSL DNA AcHobo -13 262 42 312 311 68 44 chr4 20225283 20225489 -164063173 + HAL1 LINE L1 825 1035 -1472 1225 106 80 73 chr4 20225532 20225807 -164062855 - Tigger7 DNA MER2_type 0 2487 2211 818 212 140 93 chr4 20225857 20226372 -164062290 - L1MC5 LINE L1 -728 7233 6695 2237 104 3 7 chr4 20226701 20226999 -164061663 + AluSg SINE Alu 1 297 -13 22 0 0 0 chr4 20227036 20227058 -164061604 + AT_rich Low_complexity Low_complexity 1 22 0 696 215 27 7 chr4 20227092 20227241 -164061421 + MLT1L LTR MaLR 41 192 -423 348 228 105 0 chr4 20227408 20227522 -164061140 + MLT1L LTR MaLR 418 543 -72 355 299 137 0 chr4 20227906 20228023 -164060639 + MER5B DNA MER1_type 1 133 -45 1231 291 87 6 chr4 20228731 20229216 -164059446 - MLT1H LTR MaLR -15 534 11 264 373 0 0 chr4 20229246 20229321 -164059341 + MER91 DNA MER1_type 1 75 -65 * 268 260 117 0 chr4 20229308 20229385 -164059277 - L3 LINE CR1 -250 1327 1242 429 109 0 0 chr4 20229394 20229458 -164059204 + (CA)n Simple_repeat Simple_repeat 2 65 0 276 350 29 0 chr4 20231186 20231289 -164057373 + MIR3 SINE MIR 55 160 -48 1879 152 72 26 chr4 20231361 20231709 -164056953 + THE1B LTR MaLR 1 364 0 966 261 66 3 chr4 20231853 20232217 -164056445 + MER113 DNA MER1_type? 135 521 0 448 344 112 6 chr4 20232257 20232588 -164056074 - L3b LINE CR1 -110 1473 1108 830 240 11 6 chr4 20232846 20233025 -164055637 + MER5A DNA MER1_type 3 182 -7 263 324 64 6 chr4 20233220 20233393 -164055269 + Charlie8 DNA MER1_type 278 460 -1957 280 302 23 0 chr4 20233767 20233853 -164054809 + MIR SINE MIR 163 250 -12 182 321 24 24 chr4 20235049 20235133 -164053529 + MIR SINE MIR 19 102 -106 231 366 38 15 chr4 20235460 20235591 -164053071 + L2 LINE L2 2862 2995 -277 1311 223 52 52 chr4 20235717 20236102 -164052560 + MLT1B LTR MaLR 1 385 -5 2199 112 0 0 chr4 20236242 20236536 -164052126 + AluSg SINE Alu 1 294 -16 297 282 0 24 chr4 20236963 20237048 -164051614 + L2 LINE L2 3227 3309 -4 490 204 128 76 chr4 20237192 20237560 -164051102 - MLT1C LTR MaLR -3 387 6 1012 44 0 22 chr4 20237844 20237981 -164050681 - L1PA4 LINE L1 0 6155 6022 317 283 167 45 chr4 20238036 20238594 -164050068 + L1ME4a LINE L1 5482 6107 -14 367 243 76 97 chr4 20239244 20239388 -164049274 - MIR3 SINE MIR -50 158 18 2601 58 0 0 chr4 20239425 20239736 -164048926 + AluY SINE Alu 1 311 0 6206 136 63 24 chr4 20239783 20240692 -164047970 - Tigger3b DNA MER2_type -1798 1230 263 2532 57 0 0 chr4 20240692 20240989 -164047673 + AluY SINE Alu 1 297 -14 6206 136 63 24 chr4 20240989 20241259 -164047403 - Tigger3b DNA MER2_type -2765 263 5 215 211 70 42 chr4 20242139 20242210 -164046452 - MIR3 SINE MIR -6 202 130 249 284 47 71 chr4 20243758 20243821 -164044841 + L2 LINE L2 3189 3249 -64 1960 166 31 8 chr4 20243821 20244176 -164044486 + MLT1A1 LTR MaLR 3 365 0 249 284 47 71 chr4 20244176 20244239 -164044423 + L2 LINE L2 3249 3312 -1 493 295 44 13 chr4 20244580 20244848 -164043814 + L2 LINE L2 2782 3049 -223 390 239 268 7 chr4 20244962 20245104 -164043558 - MIR SINE MIR 0 262 84 285 29 0 0 chr4 20245414 20245448 -164043214 + (CAA)n Simple_repeat Simple_repeat 2 35 0 377 290 91 8 chr4 20246568 20246707 -164041955 - MIR3 SINE MIR -63 145 15 297 299 93 0 chr4 20246848 20246945 -164041717 - MIR SINE MIR -53 209 104 198 0 0 0 chr4 20247310 20247332 -164041330 + (TA)n Simple_repeat Simple_repeat 2 23 0 208 255 0 0 chr4 20247637 20247684 -164040978 - L2 LINE L2 -68 3204 3158 2132 99 0 0 chr4 20247745 20248049 -164040613 - AluY SINE Alu 0 304 1 219 105 53 0 chr4 20248633 20248671 -164039991 + A-rich Low_complexity Low_complexity 3 42 0 1117 174 38 5 chr4 20249982 20250194 -164038468 - MER20 DNA MER1_type 0 219 1 315 169 84 14 chr4 20250568 20250639 -164038023 - MIR SINE MIR -121 141 66 186 43 0 0 chr4 20251456 20251479 -164037183 + (GA)n Simple_repeat Simple_repeat 2 24 0 584 241 64 32 chr4 20254343 20254530 -164034132 - L2 LINE L2 -4 3309 3117 243 299 75 9 chr4 20255034 20255141 -164033521 + MLT1K LTR MaLR 32 145 -443 240 217 54 33 chr4 20255278 20255370 -164033292 + MLT1L LTR MaLR 193 286 -329 227 241 0 0 chr4 20255592 20255646 -164033016 + MIR SINE MIR 209 262 0 * 545 236 19 0 chr4 20255643 20255749 -164032913 - L2 LINE L2 -1 3271 3164 368 292 161 18 chr4 20255985 20256153 -164032509 + MIR SINE MIR 1 192 -70 328 255 21 48 chr4 20256647 20256792 -164031870 + LTR67 LTR ERVL 412 552 -5 14134 175 59 18 chr4 20257538 20264126 -164024536 + L1PB3 LINE L1 6 6870 0 542 189 9 0 chr4 20264148 20264254 -164024408 - MER7A DNA MER2_type -241 105 1 473 301 68 0 chr4 20264371 20264547 -164024115 + MER117 DNA MER1_type 10 197 0 212 292 15 0 chr4 20264547 20264612 -164024050 - MIR3 SINE MIR -48 160 95 214 323 111 10 chr4 20264636 20264735 -164023927 - L3 LINE CR1 -357 1220 1112 225 282 201 40 chr4 20264739 20264888 -164023774 + MIR SINE MIR 3 175 -87 467 241 95 9 chr4 20264896 20265012 -164023650 - L2 LINE L2 0 3313 3188 289 393 0 9 chr4 20266407 20266519 -164022143 - MIR SINE MIR -62 146 36 577 247 119 46 chr4 20266951 20267145 -164021517 - MIR SINE MIR -12 250 43 407 294 44 44 chr4 20267255 20267503 -164021159 + L1ME4a LINE L1 3063 3310 -2836 319 268 124 45 chr4 20267759 20268024 -164020638 + L1ME4a LINE L1 4148 4433 -1713 472 285 29 24 chr4 20268140 20268347 -164020315 + LTR16B LTR ERVL 106 313 -151 288 267 30 15 chr4 20268839 20268974 -164019688 - MER65B LTR ERV1 -394 137 1 620 224 58 54 chr4 20269075 20269280 -164019382 + L2 LINE L2 3108 3313 0 28 48 0 0 chr4 20269342 20269384 -164019278 + AT_rich Low_complexity Low_complexity 1 42 0 371 190 134 35 chr4 20269589 20269731 -164018931 + L1ME4a LINE L1 5316 5471 -2337 301 273 76 15 chr4 20269902 20270100 -164018562 + L1ME4a LINE L1 5650 5859 -262 279 234 90 62 chr4 20270295 20270440 -164018222 - MLT1I LTR MaLR -191 218 70 263 195 26 80 chr4 20270659 20270714 -164017948 + L1ME4a LINE L1 6010 6058 -63 2247 99 0 23 chr4 20270714 20271016 -164017646 - AluSq SINE Alu -18 295 1 263 195 26 80 chr4 20271016 20271073 -164017589 + L1ME4a LINE L1 6058 6116 -5 468 271 35 106 chr4 20272491 20272732 -164015930 + MLT1I LTR MaLR 57 263 -146 2061 108 74 37 chr4 20272732 20273083 -164015579 - THE1B LTR MaLR 0 364 1 468 271 35 106 chr4 20273083 20273218 -164015444 + MLT1I LTR MaLR 263 406 -3 536 348 12 43 chr4 20273492 20273748 -164014914 + MIR SINE MIR 13 260 -2 378 301 102 93 chr4 20274120 20274562 -164014100 + L2 LINE L2 2827 3272 0 439 239 162 48 chr4 20274782 20274949 -164013713 + MER5A DNA MER1_type 4 189 0 281 330 35 0 chr4 20274964 20275079 -164013583 + MIR SINE MIR 102 220 -42 383 239 0 11 chr4 20276142 20276234 -164012428 + MER39 LTR ERV1 1 91 -616 1901 166 58 37 chr4 20276244 20276763 -164011899 - MLT2A2 LTR ERVL -1 553 1 1323 203 89 12 chr4 20276812 20277138 -164011524 + MER39 LTR ERV1 357 707 0 209 268 0 36 chr4 20277147 20277203 -164011459 + CT-rich Low_complexity Low_complexity 2 55 0 507 270 109 49 chr4 20278542 20278798 -164009864 - MIR SINE MIR 0 262 3 409 405 75 15 chr4 20279155 20279806 -164008856 + L2 LINE L2 418 1107 -2207 414 0 0 0 chr4 20280345 20280391 -164008271 + (TG)n Simple_repeat Simple_repeat 2 47 0 1934 162 0 19 chr4 20280852 20281160 -164007502 - AluJo SINE Alu -10 302 1 4295 74 18 6 chr4 20281322 20282342 -164006320 - MER11A LTR ERVK 0 1266 1 970 301 39 9 chr4 20282614 20282946 -164005716 + LTR16C LTR ERVL 150 491 0 1757 236 83 51 chr4 20283506 20284778 -164003884 - L1M3c LINE L1 -4787 2311 1 486 233 113 27 chr4 20284806 20284956 -164003706 + L2 LINE L2 3151 3313 0 1477 233 55 19 chr4 20285512 20285945 -164002717 + LTR40b LTR ERVL 14 462 0 470 356 42 9 chr4 20286007 20286223 -164002439 + L3 LINE CR1 1140 1362 -215 225 368 82 35 chr4 20286326 20286497 -164002165 + L3 LINE CR1 1388 1566 -11 206 343 30 0 chr4 20286732 20286799 -164001863 - L2 LINE L2 0 3313 3245 290 258 102 16 chr4 20287173 20287301 -164001361 - L2 LINE L2 -609 2705 2567 1719 176 15 43 chr4 20288454 20288846 -163999816 + MLT1B LTR MaLR 1 381 -9 1732 278 100 2 chr4 20289890 20290760 -163997902 - L2 LINE L2 -129 3184 2224 2741 229 89 50 chr4 20290763 20291074 -163997588 + HAL1b LINE L1 149 446 -902 2170 125 3 0 chr4 20291074 20291371 -163997291 - AluY SINE Alu -13 298 1 2741 229 89 50 chr4 20291371 20292214 -163996448 + HAL1b LINE L1 446 1348 0 23 0 0 0 chr4 20292214 20292237 -163996425 + AT_rich Low_complexity Low_complexity 1 23 0 356 318 34 47 chr4 20292502 20292523 -163996139 - MIR SINE MIR -98 164 144 3191 177 3 51 chr4 20292523 20293156 -163995506 + MER77 LTR ERV1 1 603 -2 356 318 34 47 chr4 20293156 20293282 -163995380 - MIR SINE MIR -118 144 19 360 281 10 0 chr4 20293883 20293979 -163994683 - MER81 DNA DNA 0 114 18 402 239 189 57 chr4 20294015 20294174 -163994488 - MER5A DNA MER1_type -1 188 9 304 386 83 0 chr4 20294225 20294357 -163994305 + L2 LINE L2 3111 3253 -19 335 262 98 33 chr4 20294828 20294950 -163993712 - MIR SINE MIR -63 145 16 269 250 0 15 chr4 20295818 20295886 -163992776 + GA-rich Low_complexity Low_complexity 4 70 0 244 237 0 42 chr4 20296367 20296485 -163992177 + (CATATA)n Simple_repeat Simple_repeat 5 117 0 325 316 68 0 chr4 20296739 20296856 -163991806 - L1MC4a LINE L1 -1919 5889 5765 375 254 134 15 chr4 20296902 20297036 -163991626 - L1MC4a LINE L1 -460 5661 5512 327 281 103 38 chr4 20297212 20297330 -163991332 - L1ME4a LINE L1 -89 6032 5896 273 119 0 0 chr4 20297330 20297372 -163991290 + (CA)n Simple_repeat Simple_repeat 2 43 0 327 281 103 38 chr4 20297372 20297438 -163991224 - L1ME4a LINE L1 -225 5896 5836 557 257 70 23 chr4 20297944 20298115 -163990547 + MLT1J2 LTR MaLR 272 450 0 1950 105 40 11 chr4 20298124 20298400 -163990262 + AluSg SINE Alu 1 284 -26 30 0 0 0 chr4 20298400 20298430 -163990232 + AT_rich Low_complexity Low_complexity 1 30 0 303 245 21 43 chr4 20298430 20298524 -163990138 + L1MC4 LINE L1 6612 6703 -1339 282 352 37 0 chr4 20298719 20298827 -163989835 - MIR SINE MIR -63 145 34 429 276 141 6 chr4 20298829 20298999 -163989663 + MIR SINE MIR 1 193 -69 797 239 66 36 chr4 20299002 20299303 -163989359 - MER2 DNA MER2_type -1 344 35 293 368 35 35 chr4 20299418 20299562 -163989100 - L2 LINE L2 -5 3267 3124 1034 186 5 5 chr4 20299863 20300051 -163988611 - MER5A DNA MER1_type -1 188 1 449 268 39 24 chr4 20300059 20300186 -163988476 - MER5B DNA MER1_type 0 178 50 9716 214 22 14 chr4 20300198 20304170 -163984492 - L1MD3 LINE L1 -2 7993 2326 1729 144 4 4 chr4 20304172 20304464 -163984198 - AluSx SINE Alu 0 309 18 1255 93 5 93 chr4 20304564 20304769 -163983893 + AluSg/x SINE Alu 105 291 -21 1305 252 27 6 chr4 20304885 20305222 -163983440 + L1ME1 LINE L1 5479 5822 -344 373 0 0 0 chr4 20305223 20305264 -163983398 + L1PA7 LINE L1 6099 6139 -15 21 0 0 0 chr4 20305882 20305903 -163982759 + AT_rich Low_complexity Low_complexity 1 21 0 1226 190 41 66 chr4 20305903 20306267 -163982395 + L1ME1 LINE L1 5810 6164 -2 2199 129 0 53 chr4 20306432 20306554 -163982108 + L1PA13 LINE L1 5750 5877 -286 2481 88 0 0 chr4 20306554 20306859 -163981803 - AluY SINE Alu -6 305 1 2199 129 0 53 chr4 20306859 20307147 -163981515 + L1PA13 LINE L1 5877 6138 -25 243 305 55 37 chr4 20307190 20307354 -163981308 - L2 LINE L2 -145 3168 3002 389 354 23 19 chr4 20307959 20308174 -163980488 + L3b LINE CR1 1236 1451 -132 187 308 0 0 chr4 20308249 20308288 -163980374 + L2 LINE L2 3245 3283 -30 740 234 196 26 chr4 20308484 20308796 -163979866 - MLT1H LTR MaLR -147 402 38 1009 152 217 68 chr4 20308803 20309020 -163979642 - MLT2B2 LTR ERVL -11 504 321 2191 112 3 7 chr4 20309020 20309315 -163979347 + AluSx SINE Alu 5 298 -14 1009 152 217 68 chr4 20309315 20309420 -163979242 - MLT2B2 LTR ERVL -194 321 134 1996 85 0 0 chr4 20309520 20309766 -163978896 + AluSc SINE Alu 40 285 -24 508 242 157 0 chr4 20310017 20310170 -163978492 + L2 LINE L2 3137 3313 0 272 260 26 0 chr4 20310772 20310849 -163977813 + MER5A DNA MER1_type 31 109 -80 226 270 29 88 chr4 20311226 20311363 -163977299 + MLT1H LTR MaLR 420 548 -1 374 321 99 11 chr4 20312101 20312270 -163976392 + MIR3 SINE MIR 3 177 -41 455 194 19 103 chr4 20312312 20312467 -163976195 - MIR SINE MIR -21 241 100 219 226 32 0 chr4 20312608 20312670 -163975992 + A-rich Low_complexity Low_complexity 4 67 0 2020 197 7 17 chr4 20312940 20313351 -163975311 - MLT2D LTR ERVL 0 414 8 232 300 44 33 chr4 20314052 20314142 -163974520 - MIR SINE MIR -143 119 29 243 292 26 56 chr4 20314334 20314529 -163974133 + L1ME1 LINE L1 5630 5818 -303 25 0 0 0 chr4 20314624 20314649 -163974013 + AT_rich Low_complexity Low_complexity 1 25 0 1918 163 3 3 chr4 20314649 20314943 -163973719 - AluSx SINE Alu -18 294 1 1779 198 40 6 chr4 20315009 20315362 -163973300 + MLT1A1 LTR MaLR 1 365 0 398 262 35 7 chr4 20315476 20315621 -163973041 + L1ME1 LINE L1 6013 6161 -5 202 233 23 0 chr4 20315638 20315681 -163972981 - MER5B DNA MER1_type -134 44 1 189 0 0 0 chr4 20315988 20316009 -163972653 + (A)n Simple_repeat Simple_repeat 1 21 0 2454 109 0 0 chr4 20316731 20317043 -163971619 + AluSx SINE Alu 1 312 0 258 220 296 45 chr4 20317103 20317235 -163971427 - MIR SINE MIR -96 166 2 327 324 0 9 chr4 20317808 20317916 -163970746 + MIR SINE MIR 37 143 -65 258 160 0 0 chr4 20318517 20318567 -163970095 + T-rich Low_complexity Low_complexity 1 50 0 2120 119 44 33 chr4 20319009 20319369 -163969293 - THE1B LTR MaLR 0 364 1 567 297 61 40 chr4 20320328 20320655 -163968007 + MER102b DNA MER1_type 5 338 -3 406 122 0 14 chr4 20320702 20320776 -163967886 + MER53 DNA DNA 117 189 0 1682 201 201 25 chr4 20320779 20321335 -163967327 + MLT1E1 LTR MaLR 1 654 0 2147 121 7 0 chr4 20321393 20321691 -163966971 - AluSx SINE Alu -1 311 12 981 240 128 44 chr4 20322160 20322632 -163966030 - MLT1G1 LTR MaLR -2 553 7 313 152 0 0 chr4 20322814 20322883 -163965779 - MSTD LTR MaLR -6 451 329 399 291 44 39 chr4 20323127 20323330 -163965332 - L1ME LINE L1 -688 5474 5271 1002 73 8 0 chr4 20323332 20323456 -163965206 - AluSc SINE Alu -184 125 1 348 304 9 0 chr4 20323476 20323588 -163965074 - L1ME LINE L1 -870 5276 5164 2411 81 0 7 chr4 20324234 20324542 -163964120 - AluY SINE Alu -5 306 1 247 375 88 6 chr4 20324972 20325132 -163963530 - MIR SINE MIR -68 194 22 2070 125 20 3 chr4 20325843 20326147 -163962515 + AluSx SINE Alu 1 309 -3 314 322 17 8 chr4 20326294 20326412 -163962250 - L2 LINE L2 -224 3048 2930 357 355 59 15 chr4 20327033 20327236 -163961426 + HAL1b LINE L1 587 798 -550 26 30 0 0 chr4 20327504 20327537 -163961125 + AT_rich Low_complexity Low_complexity 1 33 0 2289 92 0 23 chr4 20327546 20327850 -163960812 + AluSx SINE Alu 1 297 -15 1208 216 87 26 chr4 20327852 20328314 -163960348 - MER69 DNA AcHobo -100 2426 1937 1568 244 117 61 chr4 20328320 20329087 -163959575 - MER69 DNA AcHobo -1454 1072 263 233 305 119 0 chr4 20329087 20329205 -163959457 - LTR16A LTR ERVL 0 450 319 901 231 65 8 chr4 20329465 20329712 -163958950 - MER69 DNA AcHobo -2259 267 7 310 310 89 9 chr4 20329752 20330167 -163958495 + L1MC4a LINE L1 3526 3979 -2167 931 278 98 49 chr4 20330272 20331591 -163957071 + L1MC4a LINE L1 4602 5399 -747 787 250 141 21 chr4 20331786 20332023 -163956639 - L2 LINE L2 -34 3279 3072 1864 138 67 25 chr4 20332023 20332379 -163956283 + THE1C LTR MaLR 1 371 -4 787 250 141 21 chr4 20332379 20332581 -163956081 - L2 LINE L2 -241 3072 2782 580 297 126 5 chr4 20333387 20333609 -163955053 + L3 LINE CR1 1329 1577 0 515 280 207 4 chr4 20333820 20334052 -163954610 - LTR16A1 LTR ERVL 0 457 179 312 110 0 21 chr4 20334408 20334470 -163954192 - MLT2C2 LTR ERVL 0 464 419 225 140 53 0 chr4 20334509 20334566 -163954096 + (TA)n Simple_repeat Simple_repeat 2 61 0 1931 133 52 5 chr4 20334580 20334925 -163953737 - MLT2C1 LTR ERVL -41 479 3 1096 236 68 96 chr4 20335974 20336431 -163952231 - MLT1H LTR MaLR -103 446 3 692 122 0 9 chr4 20336657 20336772 -163951890 + (TCCCC)n Simple_repeat Simple_repeat 4 117 0 540 287 24 12 chr4 20338322 20338489 -163950173 - MIR SINE MIR -74 188 20 328 316 89 54 chr4 20339330 20339498 -163949164 - MER91A DNA MER1_type -22 174 1 240 283 0 0 chr4 20339632 20339685 -163948977 + L2 LINE L2 3220 3272 0 205 343 61 10 chr4 20340246 20340345 -163948317 + L2 LINE L2 2601 2704 -610 1187 297 94 35 chr4 20340787 20341278 -163947384 + LTR33 LTR ERVL 2 521 0 319 243 168 19 chr4 20341349 20341456 -163947206 + MIR SINE MIR 9 131 -131 189 0 0 0 chr4 20341468 20341489 -163947173 + (TAA)n Simple_repeat Simple_repeat 2 22 0 692 265 66 70 chr4 20341571 20341873 -163946789 + MER77 LTR ERV1 42 342 -263 559 222 58 34 chr4 20341903 20342076 -163946586 + MER77 LTR ERV1 408 601 -4 379 203 0 0 chr4 20342661 20342725 -163945937 + MER81 DNA DNA 2 65 -49 6637 91 7 2 chr4 20342750 20343950 -163944712 - L1PB1 LINE L1 0 6151 4970 476 205 0 0 chr4 20343975 20344058 -163944604 + MER81 DNA DNA 32 114 0 625 149 0 0 chr4 20344989 20345096 -163943566 - L1MA3 LINE L1 -1 6304 6198 195 321 146 0 chr4 20345137 20345274 -163943388 - MIR SINE MIR -13 249 93 2382 136 19 21 chr4 20345582 20345958 -163942704 + THE1C LTR MaLR 1 375 0 247 297 14 14 chr4 20345987 20346061 -163942601 - MIR SINE MIR -87 121 48 247 228 165 38 chr4 20346536 20346615 -163942047 + L2 LINE L2 3225 3313 0 285 266 173 22 chr4 20347986 20348125 -163940537 + MLT2E LTR ERVL 36 195 -433 184 349 0 30 chr4 20348380 20348446 -163940216 - MIR3 SINE MIR -3 205 142 355 247 93 10 chr4 20348735 20348832 -163939830 - MIR SINE MIR -62 146 42 1063 166 102 39 chr4 20348844 20349049 -163939613 - MER20 DNA MER1_type -1 218 1 332 288 118 20 chr4 20349311 20349464 -163939198 - MIR SINE MIR -1 261 94 265 393 53 0 chr4 20350077 20350227 -163938435 + MIR SINE MIR 35 192 -70 744 210 135 89 chr4 20350514 20350754 -163937908 + MLT1E LTR MaLR 1 288 -305 355 279 27 36 chr4 20351069 20351180 -163937482 - MIR SINE MIR -62 146 37 189 291 0 0 chr4 20351997 20352052 -163936610 - MIR3 SINE MIR -3 205 151 262 258 10 52 chr4 20352124 20352221 -163936441 + MER117 DNA MER1_type 98 190 -7 212 275 25 38 chr4 20352245 20352325 -163936337 - MIR SINE MIR -68 140 62 221 167 24 0 chr4 20352373 20352415 -163936247 - L2 LINE L2 0 3313 3271 708 239 144 18 chr4 20352602 20352824 -163935838 + MIR SINE MIR 12 261 -1 276 259 0 0 chr4 20352832 20352890 -163935772 - MIR SINE MIR -73 189 132 * 348 264 259 0 chr4 20352886 20353060 -163935602 + MIR SINE MIR 34 252 -10 297 135 0 0 chr4 20353062 20353114 -163935548 + (CAT)n Simple_repeat Simple_repeat 3 54 0 324 315 69 65 chr4 20353169 20353649 -163935013 + L2 LINE L2 2255 2736 -578 272 287 90 30 chr4 20353767 20353934 -163934728 + L2 LINE L2 2842 3018 -254 645 223 133 9 chr4 20354557 20354768 -163933894 - Charlie4a DNA MER1_type -4 504 268 13676 117 40 88 chr4 20354771 20354891 -163933771 + Tigger1 DNA MER2_type 1 125 -2293 2186 132 3 0 chr4 20354891 20355201 -163933461 + AluSx SINE Alu 2 312 0 13676 117 40 88 chr4 20355201 20356680 -163931982 + Tigger1 DNA MER2_type 125 1672 -746 2098 108 11 0 chr4 20356680 20356957 -163931705 + AluSp SINE Alu 1 280 -33 13676 117 40 88 chr4 20356957 20357702 -163930960 + Tigger1 DNA MER2_type 1672 2220 -198 1760 194 0 0 chr4 20357702 20357996 -163930666 - AluJo SINE Alu -18 294 1 13676 117 40 88 chr4 20357996 20358186 -163930476 + Tigger1 DNA MER2_type 2220 2417 -1 317 193 23 11 chr4 20358243 20358331 -163930331 - Charlie4a DNA MER1_type -350 158 70 561 298 69 0 chr4 20358554 20358742 -163929920 - MIR SINE MIR -14 248 48 2058 127 13 3 chr4 20358747 20359046 -163929616 + AluSc SINE Alu 1 302 -7 255 31 0 0 chr4 20359084 20359116 -163929546 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 3492 191 33 2 chr4 20359174 20359807 -163928855 + MER82 DNA MER2_type 1 653 0 605 279 73 5 chr4 20359948 20360152 -163928510 + L2 LINE L2 3095 3312 -1 1668 192 24 17 chr4 20360922 20361209 -163927453 - AluJb SINE Alu -23 289 1 522 171 23 31 chr4 20361386 20361515 -163927147 + L1MC5 LINE L1 7804 7931 -30 985 157 92 5 chr4 20362897 20363082 -163925580 + L1PB1 LINE L1 5951 6151 0 2498 77 0 3 chr4 20363092 20363404 -163925258 + AluY SINE Alu 1 311 0 294 235 30 83 chr4 20364053 20364157 -163924505 + LTR33 LTR ERVL 64 161 -362 1774 157 88 26 chr4 20364157 20364508 -163924154 + THE1C LTR MaLR 1 373 -2 294 235 30 83 chr4 20364508 20364535 -163924127 + LTR33 LTR ERVL 161 188 -335 292 250 139 0 chr4 20364625 20364733 -163923929 + LTR33 LTR ERVL 332 454 -67 28 48 0 0 chr4 20365433 20365475 -163923187 + AT_rich Low_complexity Low_complexity 1 42 0 230 348 59 8 chr4 20366416 20366534 -163922128 + L2 LINE L2 2913 3036 -236 290 339 101 0 chr4 20366781 20366890 -163921772 + L2 LINE L2 3137 3256 -16 2298 94 0 3 chr4 20367041 20367338 -163921324 - AluSx SINE Alu -7 305 10 254 304 126 39 chr4 20367340 20367649 -163921013 - L2 LINE L2 -157 3156 2821 555 265 135 39 chr4 20368251 20368600 -163920062 - MLT1J2 LTR MaLR 0 450 6 182 263 0 0 chr4 20369044 20369082 -163919580 - L2 LINE L2 -31 3241 3204 183 129 0 0 chr4 20369084 20369115 -163919547 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 314 135 19 0 chr4 20369297 20369349 -163919313 - Charlie1 DNA MER1_type -2 2759 2707 998 205 82 34 chr4 20369349 20369777 -163918885 + L1MC/D LINE L1 5051 5502 -740 1644 186 3 17 chr4 20369778 20370069 -163918593 + AluJb SINE Alu 1 287 -25 2325 61 11 0 chr4 20370073 20370373 -163918289 + AluY SINE Alu 1 303 0 4236 204 70 6 chr4 20370425 20371938 -163916724 + L1MD1 LINE L1 4639 6242 0 570 224 82 66 chr4 20371946 20372250 -163916412 + L1ME3 LINE L1 1335 1643 -4753 252 305 12 0 chr4 20372272 20372354 -163916308 + MLT1E1 LTR MaLR 1 83 -571 524 241 9 0 chr4 20372456 20372564 -163916098 + MLT1E1 LTR MaLR 53 161 -432 202 328 0 0 chr4 20372564 20372625 -163916037 + (TA)n Simple_repeat Simple_repeat 2 62 0 263 27 0 27 chr4 20372635 20372672 -163915990 + (TC)n Simple_repeat Simple_repeat 1 36 0 1068 222 72 55 chr4 20372684 20372977 -163915685 + MLT1E1 LTR MaLR 305 602 -52 366 178 27 0 chr4 20372997 20373070 -163915592 + MLT1E LTR MaLR 519 593 0 1985 109 0 8 chr4 20373117 20373382 -163915280 + AluSx SINE Alu 39 301 -11 5683 245 75 47 chr4 20373415 20375458 -163913204 + L1ME3 LINE L1 2805 4928 -1287 1417 181 35 48 chr4 20375458 20375772 -163912890 - AluJb SINE Alu 0 312 3 5683 245 75 47 chr4 20375772 20376138 -163912524 + L1ME3 LINE L1 4928 5282 -933 232 175 0 53 chr4 20376143 20376200 -163912462 + LTR66 LTR ERVL 386 439 -171 309 276 23 0 chr4 20376230 20376317 -163912345 - L1MC4 LINE L1 -1339 6703 6615 244 196 0 0 chr4 20376330 20376375 -163912287 - LTR66 LTR ERVL -171 439 395 1709 180 52 0 chr4 20376375 20376680 -163911982 + MER2 DNA MER2_type 1 321 -24 1895 211 111 33 chr4 20376684 20377303 -163911359 + L1ME3 LINE L1 5293 5978 -253 306 0 0 0 chr4 20377303 20377337 -163911325 + (CA)n Simple_repeat Simple_repeat 2 35 0 1895 211 111 33 chr4 20377337 20377417 -163911245 + L1ME3 LINE L1 5978 6050 -181 318 210 0 0 chr4 20377418 20377480 -163911182 + L1ME3 LINE L1 6169 6230 -1 843 256 129 67 chr4 20377557 20378123 -163910539 - Charlie7 DNA MER1_type -1934 678 78 256 270 95 14 chr4 20378199 20378273 -163910389 + L2 LINE L2 2997 3076 -196 650 271 128 12 chr4 20378351 20378672 -163909990 - L2 LINE L2 -6 3307 2950 322 322 31 78 chr4 20378711 20378966 -163909696 - L2 LINE L2 -756 2558 2316 501 240 184 28 chr4 20379045 20379295 -163909367 + MLT1H LTR MaLR 55 343 -206 1622 217 41 49 chr4 20380366 20380890 -163907772 + MER39 LTR ERV1 4 707 0 372 322 26 9 chr4 20381173 20381288 -163907374 - MIR SINE MIR -127 135 19 697 157 0 0 chr4 20381327 20381459 -163907203 + AluSg/x SINE Alu 181 312 0 992 234 33 71 chr4 20381588 20381955 -163906707 - MER39 LTR ERV1 -98 609 257 2743 116 8 3 chr4 20381956 20382318 -163906344 + THE1B LTR MaLR 1 364 0 233 233 0 0 chr4 20382348 20382391 -163906271 - MER39 LTR ERV1 -661 46 4 186 235 0 0 chr4 20382942 20382976 -163905686 - L2 LINE L2 -31 3241 3208 326 276 94 8 chr4 20383120 20383247 -163905415 + MIR SINE MIR 55 192 -70 881 246 26 0 chr4 20383492 20383724 -163904938 - L1MD3 LINE L1 -10 7985 7748 239 260 39 0 chr4 20384111 20384188 -163904474 + MIR SINE MIR 183 262 0 492 244 65 36 chr4 20386541 20386709 -163901953 + MIR SINE MIR 33 205 -57 324 120 0 0 chr4 20386774 20386824 -163901838 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 24 32 0 0 chr4 20386855 20386886 -163901776 + AT_rich Low_complexity Low_complexity 1 31 0 2073 108 42 0 chr4 20386895 20387181 -163901481 + AluSg SINE Alu 2 299 -11 3658 90 59 0 chr4 20387477 20387988 -163900674 + MER41A LTR ERV1 1 541 -13 3637 51 4 13 chr4 20387988 20388440 -163900222 + LTR7 LTR ERV1 1 448 -2 16701 102 16 19 chr4 20388442 20391324 -163897338 + HERVH LTR ERV1 1 2995 -4718 960 133 7 0 chr4 20391303 20391453 -163897209 + HERVH LTR ERV1 3140 3290 -4423 * 11426 88 27 40 chr4 20391443 20393122 -163895540 + HERVH LTR ERV1 3492 5149 -2564 1429 130 19 0 chr4 20393123 20393339 -163895323 + HERVH LTR ERV1 5600 5819 -1894 * 2493 84 45 13 chr4 20393337 20393717 -163894945 + HERVH LTR ERV1 7322 7713 0 3630 53 0 11 chr4 20393717 20394170 -163894492 + LTR7 LTR ERV1 1 448 -2 3164 146 52 2 chr4 20394318 20394852 -163893810 + MER34B LTR ERV1 5 565 0 607 288 80 9 chr4 20395411 20395623 -163893039 - MIR SINE MIR -34 228 2 2128 106 3 11 chr4 20395980 20396296 -163892366 + AluSg SINE Alu 1 314 0 327 49 0 0 chr4 20397122 20397163 -163891499 + (TG)n Simple_repeat Simple_repeat 2 42 0 318 286 27 45 chr4 20397269 20397381 -163891281 + LTR67 LTR ERVL 85 194 -363 470 244 43 49 chr4 20397739 20397903 -163890759 + L1MC/D LINE L1 5628 5790 -2018 246 333 39 45 chr4 20398036 20398192 -163890470 + MLT1K LTR MaLR 92 246 -342 321 326 60 30 chr4 20398308 20398541 -163890121 + MLT1K LTR MaLR 317 556 -32 2386 93 3 0 chr4 20398637 20398938 -163889724 - AluSc SINE Alu -7 302 1 2040 152 83 11 chr4 20399382 20399756 -163888906 + L1MA9 LINE L1 5907 6307 -5 180 26 53 26 chr4 20399966 20400004 -163888658 + (TTG)n Simple_repeat Simple_repeat 1 39 0 1823 123 0 4 chr4 20400004 20400265 -163888397 - AluSq SINE Alu -53 260 1 24 32 0 0 chr4 20400491 20400522 -163888140 + AT_rich Low_complexity Low_complexity 1 31 0 709 239 28 17 chr4 20401197 20401373 -163887289 - MER63A DNA MER1_type -5 205 28 217 108 27 0 chr4 20401396 20401433 -163887229 - MIR SINE MIR -117 145 108 2602 49 0 0 chr4 20401764 20402070 -163886592 + AluY SINE Alu 1 306 -5 22 0 0 0 chr4 20402866 20402888 -163885774 + AT_rich Low_complexity Low_complexity 1 22 0 36 0 0 0 chr4 20403351 20403387 -163885275 + AT_rich Low_complexity Low_complexity 1 36 0 2165 195 38 5 chr4 20403488 20403888 -163884774 + MLT2D LTR ERVL 2 414 0 327 308 129 8 chr4 20403956 20404127 -163884535 - MIR SINE MIR -56 152 3 1549 240 44 38 chr4 20404358 20404854 -163883808 - L1ME1 LINE L1 -5 6161 5663 322 204 130 74 chr4 20404895 20405003 -163883659 + MER58B DNA MER1_type 192 305 -36 3214 231 57 19 chr4 20405031 20406194 -163882468 - L1ME1 LINE L1 -521 5645 4439 792 206 33 5 chr4 20406246 20406430 -163882232 - MER96B DNA MER1_type? -223 194 6 556 213 137 11 chr4 20406435 20406618 -163882044 - L1ME1 LINE L1 -1728 4418 4213 * 3252 239 64 24 chr4 20406613 20406675 -163881987 - L1ME1 LINE L1 -2535 3611 3553 2264 101 3 0 chr4 20406675 20406971 -163881691 + AluSp SINE Alu 1 297 -16 3252 239 64 24 chr4 20406971 20408026 -163880636 - L1ME1 LINE L1 -2593 3553 2449 247 270 28 7 chr4 20408383 20408465 -163880197 + CT-rich Low_complexity Low_complexity 3 144 0 1810 143 58 3 chr4 20408942 20409236 -163879426 - AluJo SINE Alu -2 310 1 194 282 59 12 chr4 20409410 20409495 -163879167 - MIR3 SINE MIR -21 187 99 411 183 0 0 chr4 20409561 20409632 -163879030 - MER5A DNA MER1_type -88 101 31 264 326 23 23 chr4 20409817 20409946 -163878716 + L3 LINE CR1 1436 1564 -13 3015 90 44 23 chr4 20410041 20410429 -163878233 + MLT2A1 LTR ERVL 1 400 -44 524 91 11 0 chr4 20410429 20410517 -163878145 + (TAGA)n Simple_repeat Simple_repeat 4 92 0 3015 90 44 23 chr4 20410517 20410563 -163878099 + MLT2A1 LTR ERVL 400 444 0 2171 106 7 0 chr4 20411677 20411982 -163876680 + AluSx SINE Alu 1 307 0 332 273 109 16 chr4 20412012 20412140 -163876522 + MIR SINE MIR 49 188 -74 331 294 153 44 chr4 20412160 20412500 -163876162 + L1MCc LINE L1 19 395 -6028 2439 97 0 0 chr4 20412711 20413020 -163875642 - AluSx SINE Alu -3 309 1 227 185 93 0 chr4 20413261 20413315 -163875347 - MIR SINE MIR -118 144 86 2261 107 0 3 chr4 20413495 20413793 -163874869 - AluSx SINE Alu -15 297 1 4029 184 48 19 chr4 20413841 20414596 -163874066 - MER21B LTR ERV1 0 863 87 478 155 130 31 chr4 20414606 20414786 -163873876 - L1PA16 LINE L1 0 6166 5949 498 214 11 0 chr4 20414793 20414882 -163873780 - MER21B LTR ERV1 -773 90 1 662 336 82 11 chr4 20415373 20415897 -163872765 + L1ME4a LINE L1 5447 6007 -114 534 250 109 38 chr4 20416026 20416346 -163872316 - L1ME4a LINE L1 -54 6067 5725 811 277 74 53 chr4 20417112 20417545 -163871117 - L2 LINE L2 -1 3312 2871 1286 219 120 23 chr4 20418424 20418808 -163869854 + MLT1C LTR MaLR 6 426 -41 207 0 0 0 chr4 20419523 20419546 -163869116 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 232 302 70 0 chr4 20419803 20419889 -163868773 - MIR SINE MIR -118 144 53 2276 137 31 11 chr4 20420178 20420535 -163868127 - THE1B LTR MaLR 0 364 1 200 264 42 28 chr4 20420708 20420780 -163867882 - MER5A DNA MER1_type -35 154 82 2184 65 7 11 chr4 20421502 20421781 -163866881 + AluY SINE Alu 1 278 -33 226 0 59 0 chr4 20421781 20421815 -163866847 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 597 256 138 50 chr4 20423236 20423556 -163865106 - MER7A DNA MER2_type 0 346 1 329 278 56 28 chr4 20424583 20424691 -163863971 - L2 LINE L2 -23 3249 3139 2225 203 23 11 chr4 20424736 20425210 -163863452 + Charlie1b DNA MER1_type 1 480 -43 2846 226 67 73 chr4 20425215 20425393 -163863269 - L1MC4 LINE L1 -21 8021 7843 261 0 0 0 chr4 20425393 20425422 -163863240 + (TG)n Simple_repeat Simple_repeat 1 29 0 2846 226 67 73 chr4 20425422 20426097 -163862565 - L1MC4 LINE L1 -199 7843 7165 2786 10 0 13 chr4 20426097 20426465 -163862197 - AluYb8 SINE Alu 0 318 1 2454 58 0 0 chr4 20426467 20426759 -163861903 - AluY SINE Alu -19 292 1 1644 186 3 17 chr4 20426763 20427054 -163861608 - AluJb SINE Alu -25 287 1 2846 226 67 73 chr4 20427054 20427483 -163861179 - L1MC4 LINE L1 -881 7161 5051 314 135 19 0 chr4 20427483 20427535 -163861127 + Charlie1b DNA MER1_type 469 521 -2 203 152 0 0 chr4 20427715 20427748 -163860914 + CT-rich Low_complexity Low_complexity 2 34 0 182 263 0 0 chr4 20427750 20427788 -163860874 + L2 LINE L2 3204 3241 -31 484 232 10 0 chr4 20528743 20528842 -163759820 + L1MC4a LINE L1 6673 6772 -1036 776 227 135 5 chr4 20528842 20529027 -163759635 + MLT1A1 LTR MaLR 157 365 0 1633 209 55 10 chr4 20529027 20529425 -163759237 + L1MC3 LINE L1 7363 7778 -7 206 342 102 21 chr4 20529971 20530158 -163758504 - L2 LINE L2 -214 3058 2857 346 287 66 73 chr4 20530314 20530757 -163757905 + L1ME4a LINE L1 5382 5820 -301 884 205 88 86 chr4 20530757 20530840 -163757822 + MLT1B LTR MaLR 2 83 -307 2066 126 0 3 chr4 20530840 20531133 -163757529 - AluSx SINE Alu -20 292 1 884 205 88 86 chr4 20531133 20531435 -163757227 + MLT1B LTR MaLR 83 388 -2 346 287 66 73 chr4 20531435 20531720 -163756942 + L1ME4a LINE L1 5820 6105 -16 312 198 45 18 chr4 20532460 20532571 -163756091 + (TA)n Simple_repeat Simple_repeat 2 115 0 183 267 0 22 chr4 20532885 20532930 -163755732 - L3 LINE CR1 -929 648 605 228 254 0 0 chr4 20533111 20533170 -163755492 + (TAA)n Simple_repeat Simple_repeat 3 61 0 255 152 0 0 chr4 20533881 20533927 -163754735 + (CA)n Simple_repeat Simple_repeat 1 46 0 387 0 0 0 chr4 20534113 20534156 -163754506 + (CA)n Simple_repeat Simple_repeat 2 44 0 760 280 110 3 chr4 20534168 20534468 -163754194 + HAL1 LINE L1 1468 1799 -708 24 0 0 0 chr4 20534538 20534562 -163754100 + AT_rich Low_complexity Low_complexity 1 24 0 228 298 0 0 chr4 20534620 20534724 -163753938 + HAL1 LINE L1 2024 2127 -380 545 250 45 100 chr4 20534784 20534984 -163753678 + MER5A DNA MER1_type 1 189 0 251 214 29 0 chr4 20535325 20535395 -163753267 + Charlie8 DNA MER1_type 418 489 -1928 394 254 9 9 chr4 20535397 20535507 -163753155 + HAL1 LINE L1 1542 1651 -856 193 273 0 23 chr4 20536600 20536644 -163752018 - L2 LINE L2 -15 3298 3256 207 253 158 21 chr4 20537329 20537424 -163751238 - MIR SINE MIR -4 258 151 255 332 103 34 chr4 20537451 20537713 -163750949 - MLT1J1 LTR MaLR -53 393 114 197 259 111 0 chr4 20537855 20537909 -163750753 - MIR SINE MIR -119 143 84 978 198 62 5 chr4 20537955 20538147 -163750515 + MER58A DNA MER1_type 7 209 -15 1561 215 31 111 chr4 20538154 20538703 -163749959 - MLT1D LTR MaLR 0 505 1 2176 102 3 3 chr4 20538780 20539075 -163749587 + AluSx SINE Alu 1 295 -17 350 274 92 49 chr4 20540361 20540525 -163748137 - MIR SINE MIR -74 188 18 235 263 88 0 chr4 20541481 20541561 -163747101 - MLT1K LTR MaLR -131 457 371 181 111 0 0 chr4 20541622 20541649 -163747013 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1865 129 7 11 chr4 20541649 20541928 -163746734 - AluSq SINE Alu 0 338 34 395 292 90 7 chr4 20542174 20542318 -163746344 - MIR SINE MIR -10 252 97 303 93 0 0 chr4 20542589 20542632 -163746030 + (GA)n Simple_repeat Simple_repeat 2 44 0 1392 181 126 6 chr4 20542810 20543136 -163745526 - MLT1A1 LTR MaLR 0 365 1 1166 203 31 28 chr4 20543988 20544309 -163744353 + MLT1A1 LTR MaLR 10 331 -34 1834 114 29 7 chr4 20544314 20544622 -163744040 - L1MA3 LINE L1 0 6305 5991 820 146 0 0 chr4 20544622 20544766 -163743896 + L1MA3 LINE L1 5845 5988 -317 361 358 53 4 chr4 20545006 20545252 -163743410 - MER90 LTR ERV1 -70 544 287 245 373 73 0 chr4 20545982 20546092 -163742570 - L2 LINE L2 0 3272 3155 1850 124 118 24 chr4 20546208 20546539 -163742123 - THE1B LTR MaLR -2 362 1 282 299 81 0 chr4 20547114 20547201 -163741461 + MIR SINE MIR 55 148 -60 217 313 209 28 chr4 20547644 20547826 -163740836 - MIR SINE MIR 0 262 48 321 278 35 42 chr4 20547998 20548142 -163740520 + MLT1H1 LTR MaLR 64 206 -349 194 343 62 45 chr4 20548458 20548636 -163740026 - L2 LINE L2 -338 2976 2796 443 314 74 54 chr4 20549049 20549291 -163739371 - MIR SINE MIR -14 248 2 183 352 11 11 chr4 20549372 20549460 -163739202 - MER5A DNA MER1_type -95 94 7 337 121 15 15 chr4 20550454 20550520 -163738142 + CT-rich Low_complexity Low_complexity 3 68 0 221 217 17 50 chr4 20550746 20550806 -163737856 - L2 LINE L2 -2 3311 3254 248 274 57 24 chr4 20551029 20551153 -163737509 - MLT1K LTR MaLR -26 562 435 253 219 55 0 chr4 20551178 20551251 -163737411 + CT-rich Low_complexity Low_complexity 2 78 0 242 286 32 0 chr4 20551536 20551599 -163737063 - L2 LINE L2 -8 3305 3241 248 223 49 0 chr4 20551779 20551863 -163736799 - MIR3 SINE MIR -18 190 98 314 243 68 29 chr4 20552641 20552744 -163735918 + L1ME1 LINE L1 5087 5193 -953 183 100 0 0 chr4 20552790 20552820 -163735842 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 234 0 0 0 chr4 20552903 20552929 -163735733 + (A)n Simple_repeat Simple_repeat 1 26 0 338 312 43 66 chr4 20552944 20553245 -163735417 + L1ME1 LINE L1 5426 5722 -448 21 36 0 0 chr4 20553550 20553578 -163735084 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 20553637 20553658 -163735004 + AT_rich Low_complexity Low_complexity 1 21 0 651 286 11 0 chr4 20554076 20554261 -163734401 + MER5A DNA MER1_type 1 187 -2 227 154 39 39 chr4 20554264 20554316 -163734346 - L2 LINE L2 -526 2788 2737 967 189 9 48 chr4 20554466 20554693 -163733969 - MER20 DNA MER1_type 0 219 2 5265 124 11 21 chr4 20555040 20555697 -163732965 - L1PA15 LINE L1 -5 6160 5513 2480 139 61 5 chr4 20555697 20556108 -163732554 - MER61C LTR ERV1 0 434 1 5265 124 11 21 chr4 20556108 20556366 -163732296 - L1PA15 LINE L1 -652 5513 5254 1852 211 50 67 chr4 20556381 20556945 -163731717 - MLT2B3 LTR ERVL 0 554 1 8034 110 8 7 chr4 20556945 20558156 -163730506 - HERVL-B3 LTR ERVL 0 5654 4442 2275 169 23 80 chr4 20558159 20558761 -163729901 + LTR8 LTR ERV1 112 679 -12 323 338 59 15 chr4 20558804 20558940 -163729722 - MER5A DNA MER1_type -1 188 47 412 48 32 0 chr4 20560248 20560311 -163728351 + (TG)n Simple_repeat Simple_repeat 2 66 0 1799 188 29 9 chr4 20561061 20561401 -163727261 - MER7A DNA MER2_type -1 345 1 311 174 116 0 chr4 20562271 20562357 -163726305 + L1ME1 LINE L1 5791 5886 -280 41181 30 21 1 chr4 20562406 20568437 -163720225 + L1HS LINE L1 3 6155 0 414 39 0 0 chr4 20568439 20568491 -163720171 + (A)n Simple_repeat Simple_repeat 1 52 0 570 259 17 21 chr4 20568491 20568721 -163719941 + L1MA10 LINE L1 5955 6331 -3 206 329 49 12 chr4 20568869 20568951 -163719711 - L2 LINE L2 -1 3271 3187 22 70 0 0 chr4 20569051 20569094 -163719568 + AT_rich Low_complexity Low_complexity 1 43 0 213 225 14 14 chr4 20569101 20569172 -163719490 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 236 100 0 20 chr4 20569173 20569223 -163719439 + (TA)n Simple_repeat Simple_repeat 1 49 0 360 183 39 33 chr4 20569264 20569417 -163719245 + (TTATA)n Simple_repeat Simple_repeat 5 158 0 212 0 36 0 chr4 20570055 20570083 -163718579 + (TTG)n Simple_repeat Simple_repeat 2 30 0 288 209 20 20 chr4 20570814 20570964 -163717698 + CT-rich Low_complexity Low_complexity 1 150 0 206 304 14 0 chr4 20571336 20571405 -163717257 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 2174 129 0 3 chr4 20573319 20573629 -163715033 - AluSx SINE Alu -3 309 1 196 336 196 7 chr4 20574037 20574180 -163714482 - MIR3 SINE MIR -6 202 33 252 329 0 0 chr4 20575201 20575286 -163713376 - Charlie1 DNA MER1_type -2635 126 42 699 164 16 0 chr4 20575750 20575872 -163712790 + AluSg/x SINE Alu 183 306 -6 1003 314 63 10 chr4 20575913 20576362 -163712300 - L2 LINE L2 -229 3084 2617 492 236 116 66 chr4 20576506 20576748 -163711914 + MLT1G3 LTR MaLR 156 409 -146 245 306 50 58 chr4 20576847 20577089 -163711573 - L2 LINE L2 -695 2619 2380 2064 141 33 25 chr4 20577089 20577450 -163711212 + THE1B LTR MaLR 1 364 0 21 36 0 0 chr4 20578751 20578779 -163709883 + AT_rich Low_complexity Low_complexity 1 28 0 724 300 40 0 chr4 20578823 20579046 -163709616 - MIR SINE MIR -28 234 3 618 221 0 51 chr4 20579196 20579379 -163709283 + L1MD2 LINE L1 5726 5896 -274 252 227 11 45 chr4 20579434 20579522 -163709140 + L1MD2 LINE L1 6038 6122 -237 29200 115 11 56 chr4 20579583 20582101 -163706561 - L1PA7 LINE L1 -11 6143 3515 2196 188 11 30 chr4 20582101 20582568 -163706094 + LTR22A LTR ERVK 1 458 0 29200 115 11 56 chr4 20582568 20586487 -163702175 - L1PA7 LINE L1 -2639 3515 3 324 212 92 115 chr4 20586509 20586726 -163701936 + MIR SINE MIR 47 258 -4 206 313 151 11 chr4 20587314 20587493 -163701169 - MIR SINE MIR -27 235 32 273 272 19 29 chr4 20587767 20587870 -163700792 + CT-rich Low_complexity Low_complexity 2 103 0 2022 171 0 3 chr4 20588272 20588629 -163700033 + MER46B DNA MER2_type 5 235 -1 295 50 0 0 chr4 20588814 20588854 -163699808 - tRNA-Pro-CCT tRNA tRNA -35 40 1 924 43 0 0 chr4 20588860 20588977 -163699685 + L1PA4 LINE L1 6036 6152 -3 228 389 62 35 chr4 20590818 20591075 -163697587 - L2 LINE L2 -205 3067 2804 743 86 35 9 chr4 20592056 20592075 -163696587 - L1PA5 LINE L1 0 6154 6137 213 57 0 29 chr4 20592075 20592110 -163696552 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 743 86 35 9 chr4 20592110 20592206 -163696456 - L1PA5 LINE L1 -17 6137 6036 1805 189 35 9 chr4 20592394 20592732 -163695930 - MLT1A1 LTR MaLR 0 365 19 305 211 37 37 chr4 20593389 20593550 -163695112 + (TA)n Simple_repeat Simple_repeat 2 162 0 322 335 108 7 chr4 20593734 20593949 -163694713 - MIR SINE MIR -17 245 17 194 326 0 0 chr4 20593933 20593982 -163694680 - L2 LINE L2 -14 3258 3210 * 198 103 0 0 chr4 20594578 20594607 -163694055 + (TTC)n Simple_repeat Simple_repeat 2 30 0 180 0 0 0 chr4 20595341 20595361 -163693301 + (TTG)n Simple_repeat Simple_repeat 2 21 0 367 361 18 12 chr4 20595586 20595752 -163692910 + MIR SINE MIR 2 168 -94 36 40 0 0 chr4 20596256 20596306 -163692356 + AT_rich Low_complexity Low_complexity 1 50 0 399 21 0 0 chr4 20597415 20597463 -163691199 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 21 71 0 0 chr4 20597953 20597995 -163690667 + AT_rich Low_complexity Low_complexity 1 42 0 734 191 30 0 chr4 20598050 20598181 -163690481 + AluJo SINE Alu 1 135 -177 181 293 91 40 chr4 20598451 20598550 -163690112 + L2 LINE L2 3206 3309 -4 1323 98 0 0 chr4 20599398 20599617 -163689045 - AluY SINE Alu 0 311 127 403 247 40 20 chr4 20599953 20600103 -163688559 - MER103 DNA DNA -10 156 4 1804 75 0 16 chr4 20600418 20600670 -163687992 + L1PA13 LINE L1 5916 6163 0 636 311 48 12 chr4 20600944 20601192 -163687470 - LTR16C LTR ERVL -91 400 144 2359 62 10 23 chr4 20601312 20601616 -163687046 - AluY SINE Alu -11 300 1 42 20 0 0 chr4 20601712 20601761 -163686901 + AT_rich Low_complexity Low_complexity 1 49 0 298 294 104 50 chr4 20601792 20601993 -163686669 - L2 LINE L2 -17 3296 3085 687 303 56 25 chr4 20602007 20602330 -163686332 - L2 LINE L2 -684 2630 2298 29 0 0 0 chr4 20603042 20603071 -163685591 + AT_rich Low_complexity Low_complexity 1 29 0 2876 118 9 5 chr4 20603148 20603579 -163685083 - MER57B LTR ERV1 -1 433 1 1962 152 0 0 chr4 20603992 20604281 -163684381 + AluSx SINE Alu 11 299 -13 1810 235 85 66 chr4 20604381 20605029 -163683633 - MLT2F LTR ERVL -3 660 1 196 298 60 0 chr4 20605364 20605448 -163683214 - MIR SINE MIR -73 189 101 1766 157 3 11 chr4 20605649 20605963 -163682699 - AluSx SINE Alu 0 312 1 27 0 0 0 chr4 20606027 20606054 -163682608 + AT_rich Low_complexity Low_complexity 1 27 0 797 213 19 53 chr4 20606261 20606468 -163682194 + MLT2B1 LTR ERVL 1 200 -320 185 365 0 0 chr4 20606871 20606956 -163681706 - MIR SINE MIR -41 221 137 216 67 0 0 chr4 20608011 20608041 -163680621 + (TGG)n Simple_repeat Simple_repeat 3 32 0 477 311 107 6 chr4 20608440 20608617 -163680045 + MIR3 SINE MIR 8 202 -6 1476 198 33 63 chr4 20608767 20609166 -163679496 - MLT1B LTR MaLR -1 389 3 186 43 0 0 chr4 20609491 20609514 -163679148 + (A)n Simple_repeat Simple_repeat 1 23 0 1083 237 63 47 chr4 20609623 20609986 -163678676 - MLT1B LTR MaLR 0 390 22 542 315 33 6 chr4 20610706 20610887 -163677775 + MIR SINE MIR 13 198 -64 209 210 16 0 chr4 20610929 20610991 -163677671 + (CTA)n Simple_repeat Simple_repeat 1 63 0 470 238 191 0 chr4 20612921 20613068 -163675594 + MIR SINE MIR 88 262 0 566 189 14 81 chr4 20613467 20613615 -163675047 + MLT2A2 LTR ERVL 269 406 -47 715 303 149 20 chr4 20613731 20614173 -163674489 - LTR33 LTR ERVL -7 514 16 1693 149 64 10 chr4 20614315 20614610 -163674052 + AluSx SINE Alu 1 311 -1 411 217 57 74 chr4 20614751 20614926 -163673736 - Charlie7 DNA MER1_type -1 2611 2440 284 294 71 0 chr4 20615237 20615322 -163673340 - MIR SINE MIR -82 180 90 269 297 85 8 chr4 20615597 20615715 -163672947 + L2 LINE L2 3146 3272 0 24 67 0 0 chr4 20615761 20615806 -163672856 + AT_rich Low_complexity Low_complexity 1 45 0 1018 118 44 44 chr4 20617803 20617933 -163670729 - L1PA16 LINE L1 0 6166 6034 1292 150 87 113 chr4 20617933 20618393 -163670269 + LTR7 LTR ERV1 1 448 -2 1018 118 44 44 chr4 20618393 20618466 -163670196 - L1PA16 LINE L1 -131 6035 5963 672 208 198 43 chr4 20618816 20619023 -163669639 - MIR SINE MIR 0 262 24 277 322 67 61 chr4 20620254 20620434 -163668228 + MIR SINE MIR 13 193 -69 * 506 287 11 80 chr4 20620424 20620612 -163668050 + MER5A DNA MER1_type 9 183 -6 1907 123 4 0 chr4 20622053 20622321 -163666341 - AluSc SINE Alu -40 269 1 1840 153 3 34 chr4 20622321 20622647 -163666015 - Tigger1 DNA MER2_type -2102 316 1 249 339 62 9 chr4 20622662 20622774 -163665888 - MIR SINE MIR -56 206 89 224 289 0 0 chr4 20623359 20623411 -163665251 + L2 LINE L2 3219 3270 -2 284 325 50 0 chr4 20623891 20623971 -163664691 - L2 LINE L2 -13 3300 3217 203 255 157 0 chr4 20624007 20624058 -163664604 - L2 LINE L2 -55 3258 3200 2000 217 98 38 chr4 20624208 20625034 -163663628 + L1MD3 LINE L1 6902 7990 0 351 0 0 0 chr4 20625622 20625661 -163663001 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 374 242 33 64 chr4 20626890 20627052 -163661610 - MIR SINE MIR -50 212 54 22 35 0 0 chr4 20627337 20627366 -163661296 + AT_rich Low_complexity Low_complexity 1 29 0 301 298 65 24 chr4 20627890 20628014 -163660648 + MIR SINE MIR 15 143 -119 27 29 0 0 chr4 20628213 20628247 -163660415 + AT_rich Low_complexity Low_complexity 1 34 0 530 259 90 90 chr4 20628341 20628596 -163660066 + MIR SINE MIR 3 257 -5 1079 197 34 5 chr4 20628630 20628838 -163659824 + MER20 DNA MER1_type 1 214 -5 218 294 43 43 chr4 20629115 20629207 -163659455 - MIR SINE MIR -49 213 122 2159 101 3 0 chr4 20629265 20629572 -163659090 - HERVH LTR ERV1 -7405 308 1 2250 97 49 5 chr4 20629572 20629949 -163658713 - LTR7 LTR ERV1 0 450 1 860 223 51 102 chr4 20629969 20630301 -163658361 + L1MA10 LINE L1 6018 6332 -2 1678 131 4 4 chr4 20630338 20630597 -163658065 - AluSg SINE Alu -3 307 49 1937 57 0 0 chr4 20630974 20631221 -163657441 + L1PA5 LINE L1 5904 6150 -4 198 283 0 0 chr4 20631549 20631595 -163657067 - L2 LINE L2 0 3272 3227 455 87 14 0 chr4 20632041 20632110 -163656552 + (CA)n Simple_repeat Simple_repeat 1 70 0 26 64 0 0 chr4 20633406 20633453 -163655209 + AT_rich Low_complexity Low_complexity 1 47 0 672 296 69 0 chr4 20634160 20634376 -163654286 + MIR SINE MIR 20 250 -12 311 253 11 11 chr4 20634384 20634479 -163654183 + (TTA)n Simple_repeat Simple_repeat 1 95 0 21 36 0 0 chr4 20634585 20634613 -163654049 + AT_rich Low_complexity Low_complexity 1 28 0 192 152 0 0 chr4 20634687 20634720 -163653942 + A-rich Low_complexity Low_complexity 1 33 0 221 227 45 15 chr4 20634842 20634908 -163653754 + MIR SINE MIR 120 187 -75 270 247 26 0 chr4 20634996 20635073 -163653589 - MIR SINE MIR -44 218 140 3990 116 21 68 chr4 20635895 20636611 -163652051 + LTR8 LTR ERV1 1 682 -9 242 304 118 10 chr4 20636653 20636755 -163651907 - MIR SINE MIR -106 156 44 676 98 0 0 chr4 20636757 20636849 -163651813 + LTR8A LTR ERV1 1 92 -635 * 1333 186 126 60 chr4 20636845 20637227 -163651435 + LTR8A LTR ERV1 321 727 0 400 273 73 13 chr4 20637294 20637444 -163651218 + MIR SINE MIR 36 194 -68 6282 18 0 0 chr4 20637531 20638248 -163650414 - L1PA3 LINE L1 0 6155 5439 801 231 17 132 chr4 20639022 20639377 -163649285 - MLT1A1 LTR MaLR 0 365 52 259 318 23 11 chr4 20639536 20639624 -163649038 - L2 LINE L2 0 3272 3184 2344 83 20 0 chr4 20640310 20640611 -163648051 + AluY SINE Alu 1 307 -4 280 336 46 23 chr4 20641755 20641886 -163646776 + MIR SINE MIR 99 232 -30 21 0 0 0 chr4 20642371 20642392 -163646270 + AT_rich Low_complexity Low_complexity 1 21 0 223 325 43 43 chr4 20642446 20642563 -163646099 + L2 LINE L2 2519 2635 -679 397 339 75 55 chr4 20642611 20643027 -163645635 + L2 LINE L2 2826 3249 -64 5228 155 31 34 chr4 20643304 20644379 -163644283 + MER11C LTR ERVK 1 1071 0 25 0 0 0 chr4 20644883 20644908 -163643754 + AT_rich Low_complexity Low_complexity 1 25 0 547 248 34 20 chr4 20645324 20645473 -163643189 - MER58B DNA MER1_type -3 338 188 1898 127 3 59 chr4 20645673 20645997 -163642665 + AluSc SINE Alu 1 306 -3 22 35 0 0 chr4 20646006 20646035 -163642627 + AT_rich Low_complexity Low_complexity 1 29 0 28 71 0 0 chr4 20646097 20646153 -163642509 + AT_rich Low_complexity Low_complexity 1 56 0 221 159 0 0 chr4 20646153 20646197 -163642465 + A-rich Low_complexity Low_complexity 2 45 0 246 288 0 0 chr4 20646222 20646295 -163642367 - MIR SINE MIR -56 206 134 3293 170 107 32 chr4 20646381 20646644 -163642018 - MER72 LTR ERV1 0 722 480 2416 82 0 0 chr4 20646644 20646948 -163641714 + AluY SINE Alu 1 304 -7 3293 170 107 32 chr4 20646948 20647349 -163641313 - MER72 LTR ERV1 -242 480 8 2149 154 23 0 chr4 20647747 20648098 -163640564 + THE1B LTR MaLR 3 361 -3 10116 123 4 46 chr4 20648100 20649729 -163638933 + THE1B-int LTR MaLR 14 1574 -6 2446 121 22 0 chr4 20649733 20650089 -163638573 + THE1B LTR MaLR 1 364 0 1224 227 55 47 chr4 20650089 20650450 -163638212 - MSTD LTR MaLR -32 364 1 5622 259 52 32 chr4 20650450 20652150 -163636512 - MSTD-int LTR MaLR 0 1735 2 1492 239 42 26 chr4 20652152 20652529 -163636133 - MSTD LTR MaLR 0 396 14 429 291 0 0 chr4 20652537 20652678 -163635984 + L1M4 LINE L1 4703 4843 -1303 1594 144 8 0 chr4 20652693 20652956 -163635706 + MER34C LTR ERV1 28 292 -293 1774 188 16 21 chr4 20652956 20653333 -163635329 + L1MC1 LINE L1 5942 6316 -17 1786 154 8 63 chr4 20653476 20653839 -163634823 - MER61A LTR ERV1 0 343 1 1929 199 48 30 chr4 20654131 20654641 -163634021 - MER39 LTR ERV1 0 707 4 308 303 0 74 chr4 20654833 20654955 -163633707 + L2 LINE L2 3199 3311 -2 1135 263 86 21 chr4 20655104 20655488 -163633174 + MLT1I LTR MaLR 1 409 0 22 35 0 0 chr4 20655562 20655591 -163633071 + AT_rich Low_complexity Low_complexity 1 29 0 297 251 97 50 chr4 20655614 20655893 -163632769 - L1M4 LINE L1 -1525 4621 4330 21 36 0 0 chr4 20655935 20655963 -163632699 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr4 20655985 20656022 -163632640 + AT_rich Low_complexity Low_complexity 1 37 0 28 29 0 0 chr4 20656051 20656086 -163632576 + AT_rich Low_complexity Low_complexity 1 35 0 653 309 98 24 chr4 20657154 20657491 -163631171 + MLT1I LTR MaLR 46 407 -2 1322 239 42 24 chr4 20657533 20657913 -163630749 + MLT1B LTR MaLR 1 387 -3 758 232 27 58 chr4 20658084 20658308 -163630354 + MIR SINE MIR 36 252 -10 3545 157 72 19 chr4 20658320 20659049 -163629613 - LTR1B LTR ERV1 0 785 1 226 284 11 57 chr4 20659148 20659236 -163629426 - MER96 DNA MER1_type? -91 84 1 277 366 58 12 chr4 20661061 20661233 -163627429 - L2 LINE L2 -158 3114 2935 203 418 37 0 chr4 20661347 20661481 -163627181 + L2 LINE L2 2399 2537 -777 251 373 59 17 chr4 20661609 20661727 -163626935 - L2 LINE L2 -38 3234 3112 234 335 52 61 chr4 20662759 20662975 -163625687 + MIR SINE MIR 16 227 -35 225 269 0 0 chr4 20663209 20663261 -163625401 + LTR30 LTR ERV1 1 52 -670 1191 83 130 57 chr4 20663261 20663453 -163625209 + LTR12 LTR ERV1 53 258 -456 355 248 34 17 chr4 20663453 20663570 -163625092 + LTR30 LTR ERV1 524 642 -80 1515 88 93 0 chr4 20663571 20663786 -163624876 + LTR12 LTR ERV1 480 714 0 187 281 0 47 chr4 20663834 20663898 -163624764 + L2 LINE L2 3194 3254 -18 1637 197 33 9 chr4 20664222 20664552 -163624110 - MER2 DNA MER2_type -7 338 1 210 167 0 0 chr4 20664553 20664589 -163624073 + (TA)n Simple_repeat Simple_repeat 2 37 0 44 0 0 0 chr4 20664591 20664635 -163624027 + AT_rich Low_complexity Low_complexity 1 44 0 1929 263 49 31 chr4 20664797 20665280 -163623382 - MLT1E LTR MaLR -9 584 88 2769 178 12 0 chr4 20665280 20665770 -163622892 - LOR1a LTR ERV1 0 497 2 1929 263 49 31 chr4 20665770 20665857 -163622805 - MLT1E LTR MaLR -505 88 4 659 331 125 33 chr4 20666306 20667314 -163621348 + L1M4 LINE L1 3136 4236 -1910 405 315 82 30 chr4 20667475 20667805 -163620857 + L1M4 LINE L1 4456 4802 -1344 31 0 0 0 chr4 20668087 20668118 -163620544 + AT_rich Low_complexity Low_complexity 1 31 0 316 303 158 21 chr4 20668171 20668406 -163620256 + L1M4 LINE L1 5124 5393 -753 998 116 27 14 chr4 20668626 20668773 -163619889 - AluSg SINE Alu -159 151 3 209 176 0 0 chr4 20669766 20669800 -163618862 + GA-rich Low_complexity Low_complexity 2 35 0 707 317 54 8 chr4 20671174 20671414 -163617248 - MIR SINE MIR 0 262 12 2096 136 10 0 chr4 20671643 20671938 -163616724 - AluSx SINE Alu -14 298 1 26 64 0 0 chr4 20671941 20671988 -163616674 + AT_rich Low_complexity Low_complexity 1 47 0 534 214 48 37 chr4 20672325 20672512 -163616150 + MER53 DNA DNA 1 189 0 203 0 44 67 chr4 20672615 20672660 -163616002 + (CAAAAA)n Simple_repeat Simple_repeat 3 46 0 261 269 146 31 chr4 20672849 20673001 -163615661 - MER5A DNA MER1_type -10 179 2 394 294 175 0 chr4 20673412 20673572 -163615090 - MLT1K LTR MaLR -305 283 96 275 191 0 0 chr4 20674064 20674111 -163614551 - MER5A DNA MER1_type -84 105 59 180 290 30 70 chr4 20674202 20674302 -163614360 + L2 LINE L2 3177 3272 0 4330 161 70 50 chr4 20674846 20675897 -163612765 + MER11C LTR ERVK 1 1071 0 220 262 214 48 chr4 20677393 20677561 -163611101 - L2 LINE L2 -752 2562 2367 2021 169 14 19 chr4 20677814 20678160 -163610502 - MLT1A1 LTR MaLR 0 365 20 982 219 135 42 chr4 20678160 20678494 -163610168 - MLT1A1 LTR MaLR 0 365 1 2021 169 14 19 chr4 20678494 20678514 -163610148 - MLT1A1 LTR MaLR -345 20 1 246 331 101 14 chr4 20678718 20678857 -163609805 - MIR SINE MIR -55 207 57 214 242 16 32 chr4 20678884 20678946 -163609716 - L2 LINE L2 -3 3310 3250 7831 18 0 0 chr4 20679770 20680713 -163607949 - L1PA3 LINE L1 0 6155 5213 1331 212 36 51 chr4 20680942 20681334 -163607328 - MLT1B LTR MaLR -4 386 1 257 279 0 0 chr4 20682242 20682310 -163606352 + (CA)n Simple_repeat Simple_repeat 1 68 0 1346 145 79 11 chr4 20682409 20682768 -163605894 - L1M1 LINE L1 -743 5403 5101 2883 190 8 0 chr4 20682772 20683299 -163605363 + L1MA4 LINE L1 5488 6018 -282 24 32 0 0 chr4 20683369 20683400 -163605262 + AT_rich Low_complexity Low_complexity 1 31 0 182 269 179 0 chr4 20683762 20683829 -163604833 + L2 LINE L2 3227 3305 -8 195 143 0 0 chr4 20683996 20684031 -163604631 + L2 LINE L2 3279 3313 0 538 176 182 61 chr4 20684145 20684293 -163604369 + MER5A DNA MER1_type 21 186 -3 1097 219 64 122 chr4 20685513 20685978 -163602684 + MLT1D LTR MaLR 1 433 -72 2150 129 0 3 chr4 20685978 20686287 -163602375 - AluSx SINE Alu -4 308 1 1097 219 64 122 chr4 20686287 20686355 -163602307 + MLT1D LTR MaLR 433 503 -2 1991 147 39 30 chr4 20686706 20687067 -163601595 + THE1B LTR MaLR 1 364 0 577 278 90 67 chr4 20687348 20687736 -163600926 + MLT1J2 LTR MaLR 5 401 -49 415 322 0 33 chr4 20688971 20689123 -163599539 + MIR SINE MIR 116 262 0 786 199 0 0 chr4 20689192 20689338 -163599324 - MER3 DNA MER1_type -87 122 24 1117 283 35 0 chr4 20689833 20690091 -163598571 + Tigger7 DNA MER2_type 1 267 -2220 504 206 10 0 chr4 20690089 20690186 -163598476 + Tigger7 DNA MER2_type 2393 2490 -1 * 507 333 111 25 chr4 20690197 20690521 -163598141 + MLT1J2 LTR MaLR 99 450 0 315 374 65 16 chr4 20690532 20690778 -163597884 + L2 LINE L2 2469 2726 -588 1039 175 0 0 chr4 20690846 20691006 -163597656 + FRAM SINE Alu 1 160 -16 571 239 0 0 chr4 20692383 20692544 -163596118 + FLAM_A SINE Alu 5 165 0 191 325 125 25 chr4 20693064 20693224 -163595438 + L2 LINE L2 2436 2611 -703 1781 95 0 0 chr4 20694788 20695019 -163593643 + AluSg/x SINE Alu 77 307 -5 208 280 40 27 chr4 20695138 20695213 -163593449 - MIR SINE MIR -62 146 71 210 349 60 49 chr4 20695944 20696131 -163592531 + MIR SINE MIR 10 196 -65 24 91 0 0 chr4 20696136 20696202 -163592460 + AT_rich Low_complexity Low_complexity 1 66 0 369 0 0 0 chr4 20696972 20697013 -163591649 + (TC)n Simple_repeat Simple_repeat 2 42 0 297 0 0 0 chr4 20697012 20697045 -163591617 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 461 302 132 101 chr4 20697281 20697774 -163590888 - L2 LINE L2 -2 3311 2804 549 261 6 0 chr4 20697782 20697939 -163590723 + L1M4 LINE L1 3853 4010 -2136 5063 132 28 7 chr4 20698034 20698885 -163589777 + L1PA16 LINE L1 5298 6166 0 2334 96 0 3 chr4 20698888 20699200 -163589462 + AluY SINE Alu 1 311 0 251 319 198 19 chr4 20699798 20700005 -163588657 + MIR SINE MIR 19 262 0 294 210 48 0 chr4 20702153 20702215 -163586447 + MIR SINE MIR 128 192 -70 22 0 0 0 chr4 20702986 20703008 -163585654 + AT_rich Low_complexity Low_complexity 1 22 0 317 349 62 8 chr4 20703237 20703366 -163585296 - L2 LINE L2 -3 3269 3134 462 164 0 0 chr4 20703443 20703516 -163585146 + AluJ/FRAM SINE Alu 219 291 -21 312 381 26 5 chr4 20703557 20703746 -163584916 - L2 LINE L2 -212 3060 2868 193 357 56 7 chr4 20704063 20704206 -163584456 - L2 LINE L2 -5 3308 3159 1912 177 43 30 chr4 20704507 20705050 -163583612 - MLT2A2 LTR ERVL 0 554 1 216 250 34 68 chr4 20705225 20705313 -163583349 - MIR SINE MIR -97 165 81 1480 208 63 22 chr4 20705570 20705935 -163582727 + MLT1B LTR MaLR 1 380 -10 550 45 0 91 chr4 20705951 20706039 -163582623 - MADE1 DNA Mariner 0 80 1 187 342 92 0 chr4 20706372 20706448 -163582214 - MIR SINE MIR -114 148 66 309 280 59 42 chr4 20706723 20706841 -163581821 - MIR3 SINE MIR -20 188 69 186 43 0 0 chr4 20707901 20707924 -163580738 + (TG)n Simple_repeat Simple_repeat 2 24 0 26 0 0 0 chr4 20708202 20708228 -163580434 + AT_rich Low_complexity Low_complexity 1 26 0 818 134 65 126 chr4 20708314 20708545 -163580117 + MER20 DNA MER1_type 3 219 0 343 323 87 16 chr4 20708566 20708693 -163579969 - L2 LINE L2 0 3272 3137 510 327 100 5 chr4 20708728 20708948 -163579714 - L2 LINE L2 -40 3232 2992 1924 128 6 64 chr4 20709319 20709677 -163578985 - L1P LINE L1 -3800 2346 2010 970 47 0 31 chr4 20709677 20709806 -163578856 + L1PA8 LINE L1 6045 6169 -3 189 237 0 0 chr4 20710857 20710895 -163577767 + L2 LINE L2 3269 3306 -7 229 315 46 9 chr4 20711036 20711144 -163577518 - MER5A DNA MER1_type -76 113 2 207 0 0 0 chr4 20712096 20712119 -163576543 + (TG)n Simple_repeat Simple_repeat 1 23 0 467 205 16 63 chr4 20714057 20714184 -163574478 - MIR3 SINE MIR -27 181 61 319 347 81 33 chr4 20714537 20714808 -163573854 - Tigger8 DNA MER2_type -375 291 8 1228 238 94 25 chr4 20715870 20716316 -163572346 - Charlie4a DNA MER1_type 0 508 32 22 0 0 0 chr4 20716480 20716502 -163572160 + AT_rich Low_complexity Low_complexity 1 22 0 258 262 0 0 chr4 20716694 20716755 -163571907 + (CATATA)n Simple_repeat Simple_repeat 1 61 0 35 24 0 0 chr4 20716970 20717012 -163571650 + AT_rich Low_complexity Low_complexity 1 42 0 331 311 69 69 chr4 20717115 20717451 -163571211 - L1MC4a LINE L1 -1893 5915 5577 2326 97 0 0 chr4 20717451 20717759 -163570903 + AluSq SINE Alu 1 308 -5 331 311 69 69 chr4 20717759 20717830 -163570832 - L1MC4a LINE L1 -2230 5578 5508 6345 268 78 28 chr4 20717876 20722347 -163566315 - L1ME3 LINE L1 -7 6549 1853 808 267 61 18 chr4 20722377 20722745 -163565917 + MLT1E LTR MaLR 1 475 -118 268 234 55 94 chr4 20722768 20722969 -163565693 + L2 LINE L2 2244 2436 -878 273 342 69 45 chr4 20723037 20723239 -163565423 - L2 LINE L2 0 3313 3107 497 306 118 51 chr4 20723284 20723852 -163564810 + L2 LINE L2 2686 3309 -4 494 304 42 37 chr4 20723850 20724041 -163564621 - MIR SINE MIR -65 197 6 * 182 213 123 107 chr4 20724949 20725071 -163563591 + MIR3 SINE MIR 13 136 -72 4150 310 105 16 chr4 20725338 20727104 -163561558 + L2 LINE L2 1054 2976 -338 185 128 21 0 chr4 20727933 20727980 -163560682 + (CA)n Simple_repeat Simple_repeat 2 49 0 210 71 0 0 chr4 20727993 20728021 -163560641 + (GA)n Simple_repeat Simple_repeat 1 28 0 2029 247 80 33 chr4 20728156 20729371 -163559291 - L1ME1 LINE L1 0 6166 4876 2183 143 57 40 chr4 20729371 20729792 -163558870 - MSTA LTR MaLR 0 428 1 2029 247 80 33 chr4 20729792 20729884 -163558778 - L1ME1 LINE L1 -1290 4876 4790 662 179 32 6 chr4 20732335 20732491 -163556171 - L1MA9 LINE L1 -7 6305 6146 264 204 0 0 chr4 20732513 20732562 -163556100 - L1MA9 LINE L1 -156 6156 6108 * 7578 122 13 36 chr4 20732557 20733744 -163554918 - THE1C-int LTR MaLR -421 1159 1 1911 160 21 24 chr4 20733744 20734120 -163554542 - THE1C LTR MaLR 0 375 1 9901 226 58 15 chr4 20734125 20735013 -163553649 - L1 LINE L1 -921 5225 4377 1586 224 0 0 chr4 20735013 20735316 -163553346 - AluJo SINE Alu -9 303 1 9901 226 58 15 chr4 20735316 20737344 -163551318 - L1 LINE L1 -1769 4377 2182 1311 184 32 8 chr4 20737346 20737596 -163551066 - L1PA15 LINE L1 -4 6161 5906 947 157 87 0 chr4 20737599 20737771 -163550891 - MSTA LTR MaLR -8 420 234 6418 167 20 14 chr4 20737772 20738868 -163549794 - L1P3 LINE L1 -5351 1110 8 1430 270 29 20 chr4 20738870 20739422 -163549240 + L1 LINE L1 2558 3324 -4242 715 213 0 6 chr4 20739415 20739579 -163549083 + L1 LINE L1 5796 5958 -1607 * 251 319 198 19 chr4 20740139 20740346 -163548316 - MIR SINE MIR 0 262 19 1748 167 0 3 chr4 20740962 20741274 -163547388 - AluY SINE Alu 0 311 1 732 79 0 0 chr4 20841340 20841429 -163447233 - AluSg1 SINE Alu -219 90 2 509 276 106 68 chr4 20841532 20841796 -163446866 + MLT1I LTR MaLR 121 394 -15 2365 195 106 86 chr4 20841797 20841879 -163446783 + Charlie1a DNA MER1_type 3 82 -2679 1897 135 0 55 chr4 20841879 20842191 -163446471 - AluSx SINE Alu -17 295 1 2365 195 106 86 chr4 20842191 20842277 -163446385 + Charlie1a DNA MER1_type 82 165 -2596 2713 143 31 7 chr4 20842277 20842698 -163445964 - MSTB1 LTR MaLR -1 431 1 2365 195 106 86 chr4 20842698 20842810 -163445852 + Charlie1a DNA MER1_type 165 273 -2488 1590 186 31 7 chr4 20842810 20843101 -163445561 + AluJo SINE Alu 2 299 -13 2365 195 106 86 chr4 20843101 20843571 -163445091 + Charlie1a DNA MER1_type 273 770 -685 2103 133 3 22 chr4 20843571 20843888 -163444774 + AluSx SINE Alu 1 311 -1 6149 208 9 22 chr4 20843894 20845282 -163443380 + L1 LINE L1 3957 5326 -820 1096 174 0 112 chr4 20845282 20845523 -163443139 + AluJb SINE Alu 80 293 -19 3360 251 31 6 chr4 20845524 20846165 -163442497 + L1PA16 LINE L1 5321 5977 -189 2499 119 16 24 chr4 20846165 20846543 -163442119 - THE1C LTR MaLR 0 375 1 10657 110 12 36 chr4 20846543 20848162 -163440500 - THE1C-int LTR MaLR 0 1580 1 1519 134 17 13 chr4 20848162 20848401 -163440261 - THE1C LTR MaLR 0 375 136 262 158 193 175 chr4 20848402 20848435 -163440227 - LTR41 LTR ERVL -57 716 685 2297 96 0 0 chr4 20848435 20848749 -163439913 + AluSx SINE Alu 1 314 0 262 158 193 175 chr4 20848749 20848885 -163439777 - LTR41 LTR ERVL -88 685 543 553 188 83 23 chr4 20848900 20849033 -163439629 - LTR41 LTR ERVL -599 174 34 443 262 49 8 chr4 20849133 20849255 -163439407 - MLT1H LTR MaLR -422 127 1 248 289 66 8 chr4 20849291 20849412 -163439250 + L1MC/D LINE L1 5754 5881 -1927 2350 108 114 8 chr4 20849503 20849890 -163438772 - MSTA LTR MaLR 0 428 1 225 343 0 0 chr4 20849961 20850028 -163438634 - L2 LINE L2 -559 2755 2689 572 300 17 35 chr4 20850053 20850283 -163438379 - MIR SINE MIR 0 262 37 1596 156 102 25 chr4 20850482 20850765 -163437897 + AluSx SINE Alu 1 305 -7 251 280 102 0 chr4 20851071 20851189 -163437473 + MIR SINE MIR 77 206 -56 2655 107 3 3 chr4 20851197 20851561 -163437101 - THE1B LTR MaLR 0 364 1 1742 201 61 16 chr4 20852156 20852535 -163436127 + MSTD LTR MaLR 1 396 0 278 366 28 7 chr4 20852544 20852686 -163435976 - LTR16A LTR ERVL -18 432 288 2225 115 0 34 chr4 20852870 20853191 -163435471 + AluSx SINE Alu 2 311 -1 298 261 0 0 chr4 20853497 20853562 -163435100 + L2 LINE L2 3244 3308 -5 6443 73 14 21 chr4 20853669 20854563 -163434099 - L1PA11 LINE L1 0 6174 5287 2070 131 0 0 chr4 20854717 20855036 -163433626 - AluSx SINE Alu 0 319 1 413 285 23 23 chr4 20855872 20856002 -163432660 + MLT1K LTR MaLR 142 271 -317 1129 84 0 0 chr4 20856005 20856147 -163432515 - AluSg/x SINE Alu -12 298 157 6999 166 23 14 chr4 20856331 20856914 -163431748 + L1PB3 LINE L1 3819 4395 -1759 2359 94 0 0 chr4 20856914 20857202 -163431460 + AluSc SINE Alu 1 288 -21 6999 166 23 14 chr4 20857202 20858929 -163429733 + L1PB3 LINE L1 4395 6152 -2 231 133 0 0 chr4 20859035 20859080 -163429582 + (A)n Simple_repeat Simple_repeat 1 45 0 1204 162 26 13 chr4 20859102 20859336 -163429326 - MSTD LTR MaLR -159 237 1 257 262 244 18 chr4 20859994 20860158 -163428504 - L2 LINE L2 0 3313 3113 1802 141 61 7 chr4 20860540 20860837 -163427825 - LTR1 LTR ERV1 0 785 473 3644 119 38 144 chr4 20860839 20862264 -163426398 - LTR12 LTR ERV1 -23 1641 6 1137 248 52 16 chr4 20862264 20862601 -163426061 - LTR1 LTR ERV1 -293 533 189 * 1397 151 15 19 chr4 20862591 20862850 -163425812 - LTR1 LTR ERV1 -527 258 1 359 239 28 9 chr4 20863168 20863277 -163425385 + MER103 DNA DNA 36 146 -20 941 110 0 7 chr4 20863277 20863413 -163425249 - AluSg/x SINE Alu -13 299 165 1849 119 0 95 chr4 20863540 20863867 -163424795 - AluY SINE Alu -15 296 1 299 223 116 27 chr4 20864498 20864610 -163424052 + L2 LINE L2 3141 3262 -10 359 272 24 39 chr4 20865048 20865236 -163423426 - MLT1I LTR MaLR -3 406 266 299 208 26 26 chr4 20865314 20865391 -163423271 - MLT1J1 LTR MaLR -339 107 31 1287 189 6 102 chr4 20865436 20865770 -163422892 - AluJo SINE Alu -10 302 1 2464 141 18 2 chr4 20866221 20866618 -163422044 - MER57A LTR ERV1 0 403 1 21 0 0 0 chr4 20866632 20866653 -163422009 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 20866794 20866824 -163421838 + AT_rich Low_complexity Low_complexity 1 30 0 277 338 45 13 chr4 20866838 20866992 -163421670 - MIR SINE MIR -67 195 37 955 295 36 29 chr4 20867392 20867809 -163420853 + Tigger8 DNA MER2_type 245 664 -2 371 253 35 0 chr4 20867836 20867923 -163420739 + L2 LINE L2 3183 3272 0 1331 199 4 19 chr4 20868030 20868301 -163420361 + MLT2B1 LTR ERVL 1 267 -253 759 138 22 14 chr4 20868348 20868486 -163420176 - L1MA5A LINE L1 -3 6294 6156 953 204 144 82 chr4 20868559 20869059 -163419603 - LTR1B LTR ERV1 -237 589 59 4830 106 35 7 chr4 20869079 20869815 -163418847 - L1MA5A LINE L1 -130 6167 5411 2492 92 0 9 chr4 20869815 20870142 -163418520 + THE1B LTR MaLR 1 324 -40 1882 125 6 61 chr4 20870142 20870469 -163418193 + AluSp SINE Alu 1 309 -4 1272 100 24 0 chr4 20870469 20870639 -163418023 + AluSc SINE Alu 132 305 -4 479 96 55 0 chr4 20870639 20870712 -163417950 - L1MA5A LINE L1 -925 5221 5145 825 211 0 69 chr4 20870748 20870966 -163417696 + MLT2B1 LTR ERVL 318 520 0 283 304 24 48 chr4 20870976 20871144 -163417518 + L1MEd LINE L1 299 462 -5954 15507 118 40 9 chr4 20871335 20872266 -163416396 + Tigger1 DNA MER2_type 2 903 -1515 1754 47 0 0 chr4 20872266 20872480 -163416182 - L1PA6 LINE L1 0 6154 5941 15507 118 40 9 chr4 20872480 20873893 -163414769 + Tigger1 DNA MER2_type 903 2417 -1 21 0 0 0 chr4 20874707 20874728 -163413934 + AT_rich Low_complexity Low_complexity 1 21 0 369 209 65 86 chr4 20874799 20874928 -163413734 - L1ME3A LINE L1 0 6162 6038 450 220 88 55 chr4 20875067 20875249 -163413413 - MIR SINE MIR -73 189 2 1664 179 19 56 chr4 20875303 20875678 -163412984 + MLT1A1 LTR MaLR 1 361 -4 3621 163 20 99 chr4 20875678 20876562 -163412100 - LTR1B LTR ERV1 0 826 13 223 184 58 0 chr4 20876614 20876701 -163411961 + (TA)n Simple_repeat Simple_repeat 1 92 0 397 226 34 68 chr4 20876774 20876951 -163411711 + (TA)n Simple_repeat Simple_repeat 1 171 0 391 249 45 34 chr4 20876998 20877175 -163411487 + (TA)n Simple_repeat Simple_repeat 2 180 0 230 192 0 19 chr4 20877251 20877303 -163411359 + L1MEd LINE L1 2013 2063 -4363 324 194 62 0 chr4 20877318 20877462 -163411200 + (TA)n Simple_repeat Simple_repeat 1 153 0 23 0 0 0 chr4 20877469 20877492 -163411170 + AT_rich Low_complexity Low_complexity 1 23 0 458 216 60 0 chr4 20877502 20877636 -163411026 - MIR SINE MIR -49 213 72 4740 102 16 34 chr4 20878001 20878443 -163410219 - LTR8 LTR ERV1 0 691 265 1829 125 25 69 chr4 20878443 20878762 -163409900 - AluSx SINE Alu -7 305 1 4740 102 16 34 chr4 20878762 20879022 -163409640 - LTR8 LTR ERV1 -426 265 2 545 294 47 19 chr4 20879049 20879263 -163409399 - MIR SINE MIR -15 247 28 208 267 0 0 chr4 20880303 20880348 -163408314 + L2 LINE L2 3251 3295 -18 2419 103 0 0 chr4 20880373 20880675 -163407987 + AluSq SINE Alu 1 302 -11 209 148 0 111 chr4 20880808 20880862 -163407800 - L2 LINE L2 -1 3271 3224 279 146 125 0 chr4 20880898 20880946 -163407716 - MER103 DNA DNA -46 120 67 470 17 17 0 chr4 20880965 20881024 -163407638 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 2433 150 49 28 chr4 20881164 20881637 -163407025 + MER67A LTR ERV1 1 483 -60 1288 213 23 11 chr4 20881637 20881900 -163406762 + Tigger7 DNA MER2_type 2 267 -466 571 148 10 50 chr4 20881898 20881916 -163406746 + Tigger7 DNA MER2_type 2395 2412 -79 * 2372 88 59 34 chr4 20881916 20882270 -163406392 + THE1B LTR MaLR 1 363 -1 571 148 10 50 chr4 20882270 20882352 -163406310 + Tigger7 DNA MER2_type 2412 2491 0 388 154 0 0 chr4 20882352 20882415 -163406247 + MER67A LTR ERV1 481 543 0 1930 150 31 3 chr4 20882862 20883155 -163405507 + AluJo SINE Alu 1 301 -11 1855 115 100 0 chr4 20883163 20883432 -163405230 + AluSx SINE Alu 1 296 -16 252 0 0 0 chr4 20883478 20883506 -163405156 + (CA)n Simple_repeat Simple_repeat 1 28 0 1295 162 25 26 chr4 20883975 20884314 -163404348 + MLT1D LTR MaLR 12 395 -110 2197 119 0 16 chr4 20884314 20884624 -163404038 - AluSx SINE Alu -7 305 1 1295 162 25 26 chr4 20884624 20884735 -163403927 + MLT1D LTR MaLR 395 505 0 334 322 27 7 chr4 20885570 20885716 -163402946 + MIR SINE MIR 103 251 -11 1684 147 39 0 chr4 20886064 20886343 -163402319 - L1P LINE L1 -972 5174 4885 1894 159 44 49 chr4 20886504 20886894 -163401768 + MLT1B LTR MaLR 3 390 0 1261 185 73 31 chr4 20886896 20887155 -163401507 + AluJo SINE Alu 1 270 -42 201 108 0 0 chr4 20887155 20887192 -163401470 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 200 42 0 0 chr4 20887193 20887217 -163401445 + (GGAA)n Simple_repeat Simple_repeat 3 26 0 285 240 0 0 chr4 20887221 20887296 -163401366 + GA-rich Low_complexity Low_complexity 1 75 0 1873 97 89 0 chr4 20887296 20887554 -163401108 + AluSq SINE Alu 1 281 -32 901 54 0 23 chr4 20887555 20887685 -163400977 + (GAAA)n Simple_repeat Simple_repeat 2 128 0 402 182 17 45 chr4 20887693 20887869 -163400793 + GA-rich Low_complexity Low_complexity 2 172 0 2156 130 0 0 chr4 20887869 20888161 -163400501 + AluSc SINE Alu 1 292 -17 213 121 0 0 chr4 20888161 20888194 -163400468 + (AGGGGG)n Simple_repeat Simple_repeat 2 34 0 255 61 0 0 chr4 20888546 20888579 -163400083 + (CA)n Simple_repeat Simple_repeat 1 33 0 188 277 60 24 chr4 20888808 20888891 -163399771 - L2 LINE L2 -32 3240 3155 2566 73 3 6 chr4 20889701 20890015 -163398647 + AluSp SINE Alu 1 313 0 21 57 0 0 chr4 20890252 20890287 -163398375 + AT_rich Low_complexity Low_complexity 1 35 0 224 224 0 0 chr4 20890666 20890715 -163397947 + T-rich Low_complexity Low_complexity 2 50 0 290 171 0 13 chr4 20891392 20891468 -163397194 + (ATG)n Simple_repeat Simple_repeat 1 75 0 1140 189 166 2 chr4 20893243 20893543 -163395119 - MSTB LTR MaLR -3 423 1 2116 137 0 7 chr4 20894037 20894337 -163394325 + AluJb SINE Alu 1 298 -14 3061 148 46 15 chr4 20894455 20894996 -163393666 - L1MB3 LINE L1 -6 6177 5620 2100 204 25 45 chr4 20895828 20896343 -163392319 - MLT1D LTR MaLR 0 505 1 374 174 79 85 chr4 20896385 20896521 -163392141 - Charlie8 DNA MER1_type -2268 149 2 828 309 36 0 chr4 20896768 20897020 -163391642 - MIR SINE MIR 0 262 2 2024 94 11 7 chr4 20897356 20897631 -163391031 + AluSx SINE Alu 1 276 -36 7416 52 10 16 chr4 20897633 20898639 -163390023 + L1PA7 LINE L1 5155 6154 0 222 186 47 0 chr4 20899096 20899139 -163389523 + GA-rich Low_complexity Low_complexity 3 47 0 1495 191 3 31 chr4 20899259 20899547 -163389115 + AluJo SINE Alu 5 284 -28 401 101 56 11 chr4 20900041 20900130 -163388532 + GA-rich Low_complexity Low_complexity 3 95 0 355 237 11 11 chr4 20900412 20900505 -163388157 + MLT1I LTR MaLR 317 409 0 21 0 0 0 chr4 20900546 20900567 -163388095 + AT_rich Low_complexity Low_complexity 1 21 0 2137 128 7 0 chr4 20900636 20900933 -163387729 + AluSx SINE Alu 2 300 -12 323 296 82 76 chr4 20901490 20901794 -163386868 + MLT1K LTR MaLR 131 436 -152 290 269 154 19 chr4 20903800 20903904 -163384758 + MIR3 SINE MIR 43 160 -48 211 167 19 37 chr4 20904038 20904092 -163384570 + MIR3 SINE MIR 155 207 -1 4174 214 70 72 chr4 20904814 20906629 -163382033 + L1MB3 LINE L1 4969 6786 603 3888 165 51 56 chr4 20906629 20907418 -163381244 - LTR1 LTR ERV1 0 785 1 186 43 0 0 chr4 20907423 20907446 -163381216 + (CATA)n Simple_repeat Simple_repeat 2 24 0 4174 214 70 72 chr4 20907446 20907844 -163380818 + L1MB3 LINE L1 5784 6181 -2 1923 184 119 19 chr4 20907844 20908263 -163380399 + LOR1b LTR ERV1 1 461 0 375 266 44 9 chr4 20908276 20908389 -163380273 + L1MC4 LINE L1 7240 7356 -686 3322 151 165 48 chr4 20908392 20909431 -163379231 - pTR5 LTR ERV1 0 2438 1143 962 217 19 28 chr4 20909915 20910127 -163378535 + MER63A DNA MER1_type 1 210 0 446 273 79 14 chr4 20910213 20910352 -163378310 + MIR3 SINE MIR 4 151 -57 1410 200 25 4 chr4 20910352 20910627 -163378035 + AluJo SINE Alu 1 281 -31 335 259 53 111 chr4 20910650 20910839 -163377823 - MER5B DNA MER1_type 0 178 1 2006 262 102 9 chr4 20910873 20911415 -163377247 + MLT1E LTR MaLR 1 592 -1 22 0 0 0 chr4 20911547 20911569 -163377093 + AT_rich Low_complexity Low_complexity 1 22 0 1954 208 94 84 chr4 20911697 20911761 -163376901 - MLT1E LTR MaLR 0 593 531 2496 164 20 18 chr4 20911761 20912205 -163376457 + L1MB2 LINE L1 5710 6157 -14 2907 83 11 3 chr4 20912205 20912566 -163376096 + THE1B LTR MaLR 1 364 0 2496 164 20 18 chr4 20912566 20912577 -163376085 + L1MB2 LINE L1 6157 6166 -5 1954 208 94 84 chr4 20912577 20913098 -163375564 - MLT1E LTR MaLR -62 531 2 381 220 76 0 chr4 20913107 20913212 -163375450 - MIR SINE MIR -62 146 28 1145 110 0 0 chr4 20913272 20913427 -163375235 + L1PA15 LINE L1 6011 6165 0 1430 186 16 86 chr4 20913427 20913463 -163375199 - MER93b LTR ERV1 -7 366 329 2307 94 0 10 chr4 20913463 20913761 -163374901 + AluSp SINE Alu 1 295 -18 1430 186 16 86 chr4 20913761 20914106 -163374556 - MER93b LTR ERV1 -44 329 12 588 42 0 0 chr4 20914471 20914543 -163374119 + AluSp/q SINE Alu 230 301 -12 24 0 0 0 chr4 20914717 20914741 -163373921 + AT_rich Low_complexity Low_complexity 1 24 0 608 254 88 19 chr4 20915768 20915973 -163372689 + MIR SINE MIR 3 221 -41 352 259 113 88 chr4 20916158 20916397 -163372265 + L2 LINE L2 3027 3271 -1 746 186 118 0 chr4 20916683 20916844 -163371818 + MER104 DNA MER2_type 1 180 0 195 100 0 0 chr4 20917643 20917673 -163370989 + (TC)n Simple_repeat Simple_repeat 2 31 0 198 71 0 0 chr4 20917673 20917701 -163370961 + (CA)n Simple_repeat Simple_repeat 1 28 0 412 273 40 13 chr4 20918296 20918446 -163370216 - MER103 DNA DNA -10 156 3 438 340 72 0 chr4 20918505 20918658 -163370004 + MIR3 SINE MIR 38 201 -7 28 0 0 0 chr4 20919917 20919945 -163368717 + AT_rich Low_complexity Low_complexity 1 28 0 249 271 0 0 chr4 20920221 20920280 -163368382 + MER3 DNA MER1_type 3 61 -148 811 152 97 14 chr4 20920363 20920508 -163368154 + MER3 DNA MER1_type 53 209 0 244 350 60 16 chr4 20920886 20921069 -163367593 + L3 LINE CR1 1064 1254 -323 2371 136 52 0 chr4 20921829 20922175 -163366487 - THE1B LTR MaLR 0 364 1 302 183 14 0 chr4 20922812 20922883 -163365779 + GA-rich Low_complexity Low_complexity 3 74 0 263 54 0 0 chr4 20923150 20923187 -163365475 + L1MA3 LINE L1 6269 6305 0 364 338 36 31 chr4 20923852 20924077 -163364585 + L1M4 LINE L1 2316 2541 -3605 4512 116 17 49 chr4 20924209 20924925 -163363737 - L1PA16 LINE L1 -9 6157 5465 462 271 106 85 chr4 20925013 20925485 -163363177 + L1M4 LINE L1 2811 3292 -2854 2208 97 3 3 chr4 20925485 20925773 -163362889 + AluSq SINE Alu 1 288 -25 649 237 143 18 chr4 20925880 20926104 -163362558 + MIR SINE MIR 11 262 0 227 292 78 70 chr4 20926128 20926511 -163362151 + L1M4 LINE L1 3386 3771 -2375 927 112 0 8 chr4 20926513 20926647 -163362015 - AluSq/x SINE Alu -180 133 1 343 297 76 63 chr4 20926689 20927022 -163361640 + L1M4 LINE L1 3826 4170 -1976 6580 34 1 0 chr4 20927022 20927757 -163360905 - L1PA4 LINE L1 0 6155 5420 343 297 76 63 chr4 20927757 20927978 -163360684 + L1M4 LINE L1 4170 4387 -1759 259 288 72 36 chr4 20927986 20928125 -163360537 - LTR67 LTR ERVL -21 536 393 1062 164 169 0 chr4 20928138 20928357 -163360305 + MSTB1-int LTR MaLR 1396 1651 0 1499 199 28 71 chr4 20928357 20928571 -163360091 + MSTB1 LTR MaLR 1 192 -240 2331 74 3 3 chr4 20928571 20928867 -163359795 + AluY SINE Alu 1 296 -15 1499 199 28 71 chr4 20928867 20929045 -163359617 + MSTB1 LTR MaLR 192 376 -56 489 144 0 82 chr4 20929049 20929146 -163359516 - AluJ/FRAM SINE Alu -7 305 217 411 188 47 78 chr4 20929251 20929379 -163359283 - pTR5 LTR ERV1 -1546 892 769 1544 246 118 4 chr4 20929396 20929880 -163358782 + L1MC4 LINE L1 7355 7893 -149 227 149 21 0 chr4 20929887 20929934 -163358728 + L1MC4 LINE L1 7985 8032 -10 27 0 0 0 chr4 20929934 20929961 -163358701 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr4 20930170 20930194 -163358468 + AT_rich Low_complexity Low_complexity 1 24 0 637 291 87 78 chr4 20930306 20930752 -163357910 - L1MEd LINE L1 -4921 1198 749 512 280 40 30 chr4 20931408 20931630 -163357032 - MIR SINE MIR -28 234 14 198 333 49 95 chr4 20932569 20932812 -163355850 + L2 LINE L2 2875 3106 -166 436 250 143 25 chr4 20933011 20933207 -163355455 - MIR SINE MIR -15 247 29 296 231 164 10 chr4 20933935 20934039 -163354623 - MER117 DNA MER1_type -74 123 4 756 257 11 11 chr4 20934054 20934229 -163354433 - MER5B DNA MER1_type -3 175 1 245 283 66 38 chr4 20934676 20934782 -163353880 + MIR SINE MIR 98 206 -56 492 217 25 57 chr4 20935030 20935187 -163353475 - L1ME3 LINE L1 -96 6066 5915 215 191 0 0 chr4 20935691 20935733 -163352929 + MIR SINE MIR 81 122 -140 646 221 80 49 chr4 20935854 20936080 -163352582 + MIR SINE MIR 30 262 0 275 336 86 0 chr4 20936250 20936366 -163352296 + L2 LINE L2 3138 3263 -9 285 298 24 12 chr4 20936449 20936533 -163352129 - L2 LINE L2 -215 3057 2973 1919 141 113 3 chr4 20936766 20937093 -163351569 - MER47A DNA MER2_type -2 364 2 194 386 129 0 chr4 20937236 20937337 -163351325 + L2 LINE L2 3153 3266 -6 827 150 0 8 chr4 20937419 20937552 -163351110 + MER3 DNA MER1_type 1 132 -77 1927 143 140 6 chr4 20937586 20937929 -163350733 - MSTA LTR MaLR 0 428 40 1658 100 12 16 chr4 20937935 20938184 -163350478 + MSTA-int LTR MaLR 1333 1580 0 2185 131 141 24 chr4 20938184 20938530 -163350132 + MSTA LTR MaLR 1 398 -30 2119 106 3 7 chr4 20938530 20938841 -163349821 - AluSx SINE Alu 0 310 1 2185 131 141 24 chr4 20938841 20938876 -163349786 + MSTA LTR MaLR 398 428 0 1227 239 73 24 chr4 20938887 20939423 -163349239 - HsTC2 DNA Tc2 -122 1776 5 933 272 34 13 chr4 20940034 20940269 -163348393 + MIR SINE MIR 2 241 -21 1667 173 23 20 chr4 20941701 20942001 -163346661 - AluJo SINE Alu -11 301 1 954 82 7 37 chr4 20943542 20943677 -163344985 + AluY SINE Alu 1 131 -180 315 0 0 0 chr4 20944081 20944116 -163344546 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 599 226 17 111 chr4 20944322 20944422 -163344240 + MIR SINE MIR 13 80 -182 2307 107 3 7 chr4 20944422 20944731 -163343931 + AluSx SINE Alu 1 308 -4 599 226 17 111 chr4 20944731 20944864 -163343798 + MIR SINE MIR 80 224 -38 2800 20 7 0 chr4 20944923 20945229 -163343433 - L1PA4 LINE L1 0 6155 5848 198 392 27 0 chr4 20945294 20945368 -163343294 - L2 LINE L2 -79 3193 3118 360 298 43 80 chr4 20945408 20945559 -163343103 - LTR16C LTR ERVL -5 486 331 574 115 0 0 chr4 20945559 20945637 -163343025 + MADE1 DNA Mariner 1 78 -2 360 298 43 80 chr4 20945637 20945834 -163342828 - LTR16C LTR ERVL -160 331 151 1255 150 68 13 chr4 20947158 20947392 -163341270 + MLT1F LTR MaLR 296 542 0 225 308 64 0 chr4 20947393 20947471 -163341191 + MER5A DNA MER1_type 78 160 -29 2622 42 0 7 chr4 20947991 20948297 -163340365 + AluY SINE Alu 1 304 -7 1943 163 10 0 chr4 20948384 20948684 -163339978 + AluJb SINE Alu 5 307 -5 435 270 157 0 chr4 20949309 20949468 -163339194 - MIR SINE MIR -10 252 69 217 256 0 85 chr4 20949451 20949533 -163339129 - L2 LINE L2 -16 3256 3182 * 1669 156 7 7 chr4 20949537 20949826 -163338836 + AluSx SINE Alu 1 289 -23 1458 163 97 0 chr4 20949919 20950205 -163338457 - AluJo SINE Alu 0 311 1 686 254 153 5 chr4 20950370 20950579 -163338083 + MIR SINE MIR 4 243 -19 365 286 168 30 chr4 20950779 20951149 -163337513 - L1ME LINE L1 -316 5805 5385 2245 91 13 0 chr4 20951353 20951661 -163337001 + AluSx SINE Alu 1 312 0 275 161 18 0 chr4 20951674 20951730 -163336932 + A-rich Low_complexity Low_complexity 4 60 0 202 269 60 0 chr4 20952406 20952473 -163336189 - MIR SINE MIR -70 192 122 915 266 120 25 chr4 20952475 20952949 -163335713 - LTR33A LTR ERVL -3 520 2 2776 70 3 17 chr4 20953771 20954129 -163334533 - THE1A LTR MaLR 0 355 3 1532 143 57 8 chr4 20954129 20954394 -163334268 - AluJb SINE Alu -34 278 1 314 261 122 17 chr4 20954456 20954571 -163334091 + MIR SINE MIR 40 166 -96 1190 155 73 0 chr4 20954627 20954961 -163333701 + L1MB8 LINE L1 5138 5489 -695 1558 207 18 18 chr4 20955153 20955487 -163333175 + L1MB8 LINE L1 5508 5841 -337 457 293 191 5 chr4 20955548 20955763 -163332899 - MIR SINE MIR 0 262 8 1028 243 60 13 chr4 20956225 20956525 -163332137 + L2 LINE L2 1785 2098 -1216 721 202 129 31 chr4 20956581 20956842 -163331820 + LTR41 LTR ERVL 3 296 -499 307 223 54 27 chr4 20957039 20957151 -163331511 + LTR41 LTR ERVL 649 763 -10 1482 212 182 27 chr4 20957157 20957713 -163330949 + L2 LINE L2 2169 2810 -504 312 256 90 0 chr4 20957715 20957793 -163330869 + MER119 DNA MER1_type 3 87 -496 540 233 15 23 chr4 20957816 20957949 -163330713 + MER119 DNA MER1_type 451 582 -1 1083 256 27 72 chr4 20957960 20958197 -163330465 + L2 LINE L2 2824 3027 -286 1352 225 48 61 chr4 20958197 20958592 -163330070 - MLT1B LTR MaLR 0 390 1 1083 256 27 72 chr4 20958592 20958866 -163329796 + L2 LINE L2 3027 3312 -1 29 0 0 0 chr4 20959014 20959043 -163329619 + AT_rich Low_complexity Low_complexity 1 29 0 2164 82 0 7 chr4 20959169 20959460 -163329202 + AluSc SINE Alu 1 289 -20 334 325 70 0 chr4 20959672 20959786 -163328876 + MIR3 SINE MIR 45 166 -42 2582 168 40 72 chr4 20959808 20959829 -163328833 + L1MB5 LINE L1 5588 5608 -566 1901 121 0 66 chr4 20959829 20960161 -163328501 + AluSx SINE Alu 1 310 -2 2582 168 40 72 chr4 20960161 20960478 -163328184 + L1MB5 LINE L1 5608 5934 -240 1658 161 18 3 chr4 20960478 20960763 -163327899 + AluJo SINE Alu 1 289 -23 2582 168 40 72 chr4 20960763 20961002 -163327660 + L1MB5 LINE L1 5934 6148 -26 2421 60 0 7 chr4 20961002 20961303 -163327359 + AluY SINE Alu 1 299 -12 2582 168 40 72 chr4 20961303 20961330 -163327332 + L1MB5 LINE L1 6148 6174 0 431 210 197 25 chr4 20961356 20961478 -163327184 + MIR3 SINE MIR 18 159 -49 1868 121 36 0 chr4 20962573 20962876 -163325786 + AluSx SINE Alu 1 313 0 750 203 0 0 chr4 20962886 20963019 -163325643 + FLAM_C SINE Alu 1 133 0 262 250 14 0 chr4 20963090 20963162 -163325500 + HAL1b LINE L1 1248 1320 -28 1816 136 14 7 chr4 20963186 20963480 -163325182 + AluJb SINE Alu 1 296 -16 644 96 0 0 chr4 20964200 20964294 -163324368 - L1PA6 LINE L1 -1 6153 6060 657 270 104 14 chr4 20964726 20964948 -163323714 + MIR SINE MIR 8 249 -13 284 278 44 0 chr4 20965129 20965219 -163323443 + L2 LINE L2 3202 3295 -18 399 271 104 64 chr4 20965481 20965707 -163322955 - MIR SINE MIR -15 247 5 327 356 34 0 chr4 20966512 20966689 -163321973 - L3 LINE CR1 -1 1576 1394 206 217 33 17 chr4 20966830 20966890 -163321772 + GA-rich Low_complexity Low_complexity 2 62 0 1598 215 73 0 chr4 20966951 20967291 -163321371 + MLT1A1 LTR MaLR 1 365 0 217 250 163 64 chr4 20967932 20968104 -163320558 - MIR SINE MIR -66 196 8 393 285 21 24 chr4 20968162 20968303 -163320359 + MIR SINE MIR 22 169 -39 1317 175 36 12 chr4 20968366 20968618 -163320044 + AluJo SINE Alu 1 258 -54 1304 255 64 9 chr4 20968620 20969110 -163319552 - MER21B LTR ERV1 -199 664 98 499 260 58 23 chr4 20969236 20969409 -163319253 + MIR SINE MIR 31 209 -53 331 229 0 0 chr4 20970840 20970901 -163317761 + L2 LINE L2 3193 3253 -60 1840 140 0 7 chr4 20970932 20971225 -163317437 + AluJb SINE Alu 1 291 -21 261 0 0 0 chr4 20971228 20971257 -163317405 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2139 107 13 0 chr4 20971369 20971678 -163316984 + AluSp SINE Alu 1 313 0 763 149 16 0 chr4 20971843 20971964 -163316698 - AluJb SINE Alu -12 300 178 1947 103 31 3 chr4 20971964 20972254 -163316408 - AluSx SINE Alu -14 298 1 21 0 0 0 chr4 20972488 20972509 -163316153 + AT_rich Low_complexity Low_complexity 1 21 0 316 336 41 0 chr4 20972701 20972823 -163315839 + MIR SINE MIR 66 192 -70 286 273 10 20 chr4 20972881 20972980 -163315682 - L1MA10 LINE L1 0 6334 6237 577 284 70 37 chr4 20974151 20974394 -163314268 - MIR SINE MIR 0 262 12 1620 171 35 0 chr4 20974735 20975022 -163313640 + AluJo SINE Alu 1 297 -15 1838 82 112 4 chr4 20975082 20975351 -163313311 - AluY SINE Alu -13 298 1 2034 151 74 3 chr4 20975473 20975837 -163312825 + MLT1B LTR MaLR 1 390 0 324 302 161 21 chr4 20975859 20976051 -163312611 + MIR SINE MIR 6 224 -38 286 267 137 56 chr4 20976091 20976252 -163312410 - MIR SINE MIR -12 250 77 837 101 8 23 chr4 20976285 20976414 -163312248 - FLAM_C SINE Alu -10 133 7 923 248 75 119 chr4 20977800 20978755 -163309907 + L1MC4 LINE L1 7130 8042 0 2079 100 3 3 chr4 20978766 20979056 -163309606 + AluSx SINE Alu 1 290 -22 213 132 0 0 chr4 20979056 20979094 -163309568 + (GGGGA)n Simple_repeat Simple_repeat 1 38 0 301 276 102 0 chr4 20979860 20979958 -163308704 - L1ME4a LINE L1 -49 6072 5965 2167 101 7 0 chr4 20980338 20980644 -163308018 - AluSq SINE Alu -5 308 1 834 136 0 0 chr4 20980667 20980785 -163307877 + FLAM_C SINE Alu 1 118 -15 1809 167 0 3 chr4 20981216 20981528 -163307134 - AluJb SINE Alu -1 311 1 740 309 13 4 chr4 20981576 20981809 -163306853 + MIR SINE MIR 2 236 -26 289 230 87 40 chr4 20982021 20982147 -163306515 + L1ME4a LINE L1 5938 6069 -52 195 264 136 13 chr4 20982302 20982393 -163306269 + MIR SINE MIR 40 143 -65 555 220 8 0 chr4 20982506 20982624 -163306038 + FLAM_A SINE Alu 1 119 -14 2336 91 0 3 chr4 20982690 20982999 -163305663 - AluSc SINE Alu -1 308 1 519 239 154 45 chr4 20983208 20983252 -163305410 + L1ME4a LINE L1 5626 5664 -457 1753 166 7 7 chr4 20983252 20983548 -163305114 + AluSx SINE Alu 1 296 -16 519 239 154 45 chr4 20983548 20983950 -163304712 + L1ME4a LINE L1 5664 6121 0 2145 110 0 3 chr4 20983974 20984282 -163304380 + AluSg SINE Alu 1 307 -3 1571 163 57 20 chr4 20984542 20984843 -163303819 + AluJo SINE Alu 1 312 0 1407 206 57 0 chr4 20984988 20985289 -163303373 - MER58B DNA MER1_type 0 341 24 213 154 31 138 chr4 20985307 20985372 -163303290 + MIR SINE MIR 16 73 -135 778 108 47 0 chr4 20986038 20986167 -163302495 + L1PB4 LINE L1 6015 6149 -7 351 333 152 16 chr4 20986517 20986757 -163301905 - MIR SINE MIR -2 260 13 25 0 0 0 chr4 20987201 20987226 -163301436 + GC_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr4 20987244 20987276 -163301386 + GC_rich Low_complexity Low_complexity 1 32 0 269 132 0 19 chr4 20987653 20987706 -163300956 - L1MA4 LINE L1 -226 6074 6023 837 243 19 9 chr4 20987805 20988019 -163300643 - MER20 DNA MER1_type 0 219 4 374 246 305 21 chr4 20988263 20988450 -163300212 - MIR SINE MIR -9 253 14 281 206 44 0 chr4 20988642 20988710 -163299952 - MIR SINE MIR -6 256 186 957 176 64 21 chr4 20988950 20989138 -163299524 - AluJo SINE Alu -30 282 87 742 294 20 0 chr4 20990889 20991086 -163297576 - MIR SINE MIR -16 246 46 238 365 0 21 chr4 20991210 20991306 -163297356 + MIR SINE MIR 24 117 -145 244 256 117 88 chr4 20991842 20991932 -163296730 + L1MC4 LINE L1 7613 7710 -332 2032 202 116 19 chr4 20991932 20992517 -163296145 - LTR48B LTR ERV1 -2 642 1 244 256 117 88 chr4 20992517 20992563 -163296099 + L1MC4 LINE L1 7710 7753 -289 185 279 16 16 chr4 20993509 20993570 -163295092 - L2 LINE L2 -54 3218 3158 2300 103 0 0 chr4 20993576 20993887 -163294775 + AluSq SINE Alu 1 311 -2 236 284 55 39 chr4 20993928 20994055 -163294607 - MIR SINE MIR -27 235 107 366 225 0 24 chr4 20994532 20994616 -163294046 + MIR SINE MIR 67 149 -59 656 168 17 8 chr4 20994986 20995105 -163293557 - FLAM_C SINE Alu -13 120 1 22 0 0 0 chr4 20995125 20995147 -163293515 + AT_rich Low_complexity Low_complexity 1 22 0 308 239 82 60 chr4 20995230 20995354 -163293308 - HAL1 LINE L1 -203 2304 2181 473 274 164 34 chr4 20995354 20995737 -163292925 - L1MC4a LINE L1 -1927 5881 2117 1638 153 56 3 chr4 20995848 20996135 -163292527 + AluSx SINE Alu 1 302 -10 2713 164 39 2 chr4 20996655 20997112 -163291550 - MER101 LTR ERV1 0 474 1 202 294 128 46 chr4 20997190 20997299 -163291363 + MIR SINE MIR 141 258 -4 325 206 16 0 chr4 20997318 20997381 -163291281 - MIR SINE MIR -109 153 90 205 193 57 80 chr4 20997400 20997488 -163291174 - MIR SINE MIR -3 259 174 1836 136 4 4 chr4 20998300 20998580 -163290082 - AluJb SINE Alu 0 312 33 649 287 95 9 chr4 20999022 20999258 -163289404 - MIR SINE MIR -9 253 2 288 0 0 0 chr4 20999302 20999334 -163289328 + (TG)n Simple_repeat Simple_repeat 1 32 0 1136 147 4 101 chr4 20999823 21000061 -163288601 + AluJb SINE Alu 87 301 -11 522 281 30 0 chr4 21000168 21000335 -163288327 + L1ME LINE L1 5611 5782 -339 2066 118 0 45 chr4 21000451 21000764 -163287898 + AluJb SINE Alu 1 299 -13 24 0 0 0 chr4 21001031 21001055 -163287607 + AT_rich Low_complexity Low_complexity 1 24 0 198 143 0 0 chr4 21001061 21001096 -163287566 + (GA)n Simple_repeat Simple_repeat 2 36 0 2235 117 0 0 chr4 21001375 21001675 -163286987 + AluSx SINE Alu 1 300 -12 449 211 31 77 chr4 21002377 21002529 -163286133 + MIR SINE MIR 46 193 -63 304 149 90 0 chr4 21002752 21002819 -163285843 - MIR SINE MIR -3 259 187 310 26 0 0 chr4 21002825 21002863 -163285799 - MADE1 DNA Mariner -42 38 1 243 203 0 101 chr4 21002945 21003024 -163285638 - L2 LINE L2 -245 3027 2957 2383 100 0 0 chr4 21003071 21003370 -163285292 + AluSg SINE Alu 1 299 -11 1800 190 37 32 chr4 21003483 21003849 -163284813 + MLT2D LTR ERVL 5 375 -39 372 22 0 0 chr4 21003849 21003894 -163284768 + (CA)n Simple_repeat Simple_repeat 2 46 0 1800 190 37 32 chr4 21003894 21003933 -163284729 + MLT2D LTR ERVL 375 412 -2 551 204 0 0 chr4 21004034 21004137 -163284525 + U13 snRNA snRNA 1 103 -1 2118 124 14 0 chr4 21004162 21004452 -163284210 - AluSq SINE Alu -19 294 1 292 300 121 49 chr4 21004646 21004869 -163283793 + L3 LINE CR1 684 922 -655 221 331 58 25 chr4 21005014 21005135 -163283527 - L2 LINE L2 -783 2531 2407 189 132 0 0 chr4 21005907 21005945 -163282717 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 240 293 0 12 chr4 21006486 21006568 -163282094 + L1MEc LINE L1 610 690 -5706 3473 238 114 18 chr4 21006619 21008718 -163279944 + L1MEc LINE L1 692 2956 -3259 422 317 48 35 chr4 21009294 21009524 -163279138 + LTR67 LTR ERVL 2 234 -323 232 186 23 0 chr4 21009573 21009616 -163279046 + MER3 DNA MER1_type 3 46 -163 1047 163 6 0 chr4 21009670 21009842 -163278820 + MER3 DNA MER1_type 37 209 0 600 236 156 5 chr4 21009889 21010088 -163278574 + LTR67 LTR ERVL 329 557 0 428 258 126 0 chr4 21010801 21010952 -163277710 + MIR SINE MIR 25 194 -68 2025 139 3 7 chr4 21011046 21011348 -163277314 + AluJb SINE Alu 3 303 -9 323 296 93 65 chr4 21011350 21011480 -163277182 - MIR SINE MIR 0 262 122 2453 91 0 0 chr4 21011480 21011788 -163276874 + AluSc SINE Alu 1 308 -1 323 296 93 65 chr4 21011788 21011873 -163276789 - MIR SINE MIR -140 122 41 325 276 43 61 chr4 21012307 21012470 -163276192 - MIR SINE MIR -70 192 33 193 235 26 150 chr4 21012601 21012754 -163275908 + L2 LINE L2 3138 3271 -1 367 239 23 0 chr4 21014416 21014504 -163274158 + MIR SINE MIR 64 153 -55 559 155 0 0 chr4 21014517 21014601 -163274061 + AluJ/FLAM SINE Alu 2 85 -227 1964 149 0 7 chr4 21014622 21014917 -163273745 - AluSq SINE Alu -20 293 1 855 144 8 0 chr4 21014931 21015056 -163273606 - AluJo SINE Alu -176 136 11 243 237 123 70 chr4 21015972 21016086 -163272576 + MIR SINE MIR 23 142 -120 265 305 53 0 chr4 21016096 21016191 -163272471 + L2 LINE L2 3160 3259 -13 2137 128 0 0 chr4 21016196 21016492 -163272170 + AluSx SINE Alu 5 300 -12 414 0 0 0 chr4 21016493 21016539 -163272123 + (TA)n Simple_repeat Simple_repeat 1 46 0 273 29 0 0 chr4 21016539 21016573 -163272089 + (TG)n Simple_repeat Simple_repeat 2 35 0 218 238 0 0 chr4 21016627 21016669 -163271993 + L2 LINE L2 3210 3251 -21 232 298 39 44 chr4 21017583 21017764 -163270898 - LTR16C LTR ERVL -31 460 281 251 235 44 15 chr4 21017764 21017832 -163270830 - L2 LINE L2 -559 2755 2686 2069 113 7 3 chr4 21017873 21018184 -163270478 + AluSq SINE Alu 1 312 0 1120 256 10 7 chr4 21018207 21018496 -163270166 + L1M4 LINE L1 3821 4110 -2036 530 269 68 32 chr4 21018574 21018793 -163269869 - L2 LINE L2 -843 2471 2245 206 303 145 64 chr4 21018793 21018900 -163269762 - L2 LINE L2 -1578 1736 1639 1829 164 7 17 chr4 21018900 21019029 -163269633 + AluJb SINE Alu 1 130 -182 2115 123 7 0 chr4 21019029 21019337 -163269325 + AluSg SINE Alu 1 310 0 1829 164 7 17 chr4 21019337 21019506 -163269156 + AluJb SINE Alu 130 296 -16 206 303 145 64 chr4 21019506 21020038 -163268624 - L2 LINE L2 -1675 1639 1045 317 252 47 9 chr4 21020052 21020159 -163268503 - L2 LINE L2 -2488 826 716 390 233 98 15 chr4 21020893 21021026 -163267636 + L2 LINE L2 3170 3313 0 197 303 133 36 chr4 21021345 21021510 -163267152 - MIR SINE MIR 0 262 82 297 318 63 91 chr4 21021585 21021837 -163266825 - L2 LINE L2 0 3272 3028 584 266 107 43 chr4 21022054 21022412 -163266250 + MLT1J2 LTR MaLR 70 438 -12 811 232 66 6 chr4 21022412 21022593 -163266069 - MER68 LTR ERV1 -2 560 369 304 244 0 26 chr4 21022932 21023010 -163265652 - L1MC4a LINE L1 -1903 5905 5830 2190 134 0 3 chr4 21023022 21023335 -163265327 + AluSx SINE Alu 1 312 0 1664 140 22 0 chr4 21023348 21023619 -163265043 + L1MA8 LINE L1 6015 6291 0 1741 171 13 10 chr4 21024170 21024475 -163264187 - AluJb SINE Alu -6 306 1 237 65 0 0 chr4 21024637 21024668 -163263994 + (TTTTA)n Simple_repeat Simple_repeat 4 34 0 1730 162 11 4 chr4 21024668 21024940 -163263722 - AluSx SINE Alu -38 274 1 446 231 172 0 chr4 21024965 21025099 -163263563 + MIR SINE MIR 96 252 -10 247 364 0 23 chr4 21025639 21025713 -163262949 - MIR SINE MIR -10 252 181 367 195 39 0 chr4 21025713 21025790 -163262872 - MADE1 DNA Mariner 0 80 1 247 364 0 23 chr4 21025790 21025844 -163262818 - MIR SINE MIR -81 181 127 213 295 51 0 chr4 21025876 21025954 -163262708 + MIR SINE MIR 65 146 -116 228 290 0 14 chr4 21026079 21026148 -163262514 - MIR SINE MIR -165 97 30 209 330 110 10 chr4 21026217 21026317 -163262345 - L2 LINE L2 -27 3245 3136 351 249 63 130 chr4 21026352 21026714 -163261948 + MLT1H LTR MaLR 39 376 -33 3029 159 18 25 chr4 21026783 21027337 -163261325 - MER44D DNA MER2_type 0 605 1 2077 261 107 14 chr4 21027409 21028205 -163260457 + L2 LINE L2 1591 2460 -854 1537 120 28 99 chr4 21028208 21028435 -163260227 + L1M3 LINE L1 5374 5579 -604 2202 127 0 0 chr4 21028435 21028743 -163259919 + AluSc SINE Alu 1 308 -1 1537 120 28 99 chr4 21028743 21028799 -163259863 + L1M3 LINE L1 5579 5637 -546 303 306 89 8 chr4 21028801 21028925 -163259737 + L2 LINE L2 3179 3312 -1 2501 69 3 3 chr4 21028932 21029236 -163259426 + AluY SINE Alu 1 304 -7 230 282 24 12 chr4 21029567 21029652 -163259010 + MER5A DNA MER1_type 65 150 -39 440 147 0 0 chr4 21031832 21031907 -163256755 + L1PB3 LINE L1 6073 6147 -7 291 104 0 0 chr4 21031941 21031989 -163256673 + (CA)n Simple_repeat Simple_repeat 1 48 0 531 238 50 12 chr4 21031989 21032149 -163256513 + L1ME4a LINE L1 5947 6112 -9 189 299 26 86 chr4 21032980 21033097 -163255565 + L2 LINE L2 3160 3269 -3 2390 77 0 3 chr4 21033756 21034053 -163254609 - AluY SINE Alu -15 296 1 1365 296 66 28 chr4 21034054 21034190 -163254472 - MLT1K LTR MaLR -3 585 456 183 42 0 0 chr4 21034190 21034214 -163254448 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2142 126 0 0 chr4 21034216 21034501 -163254161 - AluSq SINE Alu -28 285 1 1365 296 66 28 chr4 21034501 21034831 -163253831 - MLT1K LTR MaLR -132 456 98 303 245 13 86 chr4 21035128 21035253 -163253409 + MIR3 SINE MIR 18 132 -76 1789 131 40 96 chr4 21035253 21035650 -163253012 - THE1C LTR MaLR 0 375 1 303 245 13 86 chr4 21035650 21035675 -163252987 + MIR3 SINE MIR 132 157 -51 774 206 7 14 chr4 21035827 21035968 -163252694 + AluJo SINE Alu 3 142 -170 293 269 0 0 chr4 21035969 21036047 -163252615 + (ATG)n Simple_repeat Simple_repeat 1 78 0 997 127 0 14 chr4 21036085 21036227 -163252435 + AluJo SINE Alu 152 291 -21 24 0 0 0 chr4 21036570 21036594 -163252068 + AT_rich Low_complexity Low_complexity 1 24 0 15202 54 0 9 chr4 21036598 21038460 -163250202 + L1P LINE L1 8 1852 -4294 * 30680 34 86 3 chr4 21038455 21043176 -163245486 + L1PA4 LINE L1 1026 6155 0 26 30 0 0 chr4 21043199 21043232 -163245430 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr4 21043281 21043304 -163245358 + AT_rich Low_complexity Low_complexity 1 23 0 625 332 42 17 chr4 21043867 21044108 -163244554 - MIR SINE MIR -6 256 10 536 224 25 31 chr4 21044531 21044692 -163243970 - MLT1J LTR MaLR -313 198 39 2314 107 3 0 chr4 21044692 21044992 -163243670 + AluSq SINE Alu 1 301 -12 286 342 34 8 chr4 21045087 21045204 -163243458 - MIR SINE MIR -70 138 19 191 237 110 42 chr4 21045683 21045801 -163242861 - L2 LINE L2 -44 3269 3144 654 269 45 74 chr4 21045878 21046190 -163242472 + MLT1K LTR MaLR 124 426 -162 2285 139 68 12 chr4 21046503 21046912 -163241750 + MSTB1 LTR MaLR 1 432 0 474 246 20 96 chr4 21047319 21047385 -163241277 + MLT1J LTR MaLR 326 395 -116 2009 135 0 7 chr4 21047385 21047681 -163240981 - AluSx SINE Alu -14 298 5 474 246 20 96 chr4 21047681 21047813 -163240849 + MLT1J LTR MaLR 395 509 -2 299 222 16 0 chr4 21047824 21047887 -163240775 + L2 LINE L2 3189 3252 -20 2176 135 0 0 chr4 21047899 21048203 -163240459 + AluSx SINE Alu 1 304 -8 931 286 50 12 chr4 21048876 21049215 -163239447 - L2 LINE L2 -1 3312 2961 2425 86 3 0 chr4 21049241 21049545 -163239117 + AluSx SINE Alu 1 305 -7 822 222 10 24 chr4 21049549 21049756 -163238906 + L1MB1 LINE L1 5825 6028 -140 827 161 39 7 chr4 21049788 21049943 -163238719 + L1MB1 LINE L1 6007 6166 -2 387 89 0 0 chr4 21049943 21049999 -163238663 + (TA)n Simple_repeat Simple_repeat 2 57 0 900 224 152 13 chr4 21050015 21050252 -163238410 + AluY SINE Alu 1 270 -41 912 249 145 60 chr4 21050259 21050991 -163237671 + LTR1B LTR ERV1 33 826 0 468 269 130 4 chr4 21051070 21051308 -163237354 - L2 LINE L2 -424 2890 2623 1705 204 184 37 chr4 21051617 21052161 -163236501 - MLT1E3 LTR MaLR 0 624 1 446 0 19 0 chr4 21052291 21052345 -163236317 + (CA)n Simple_repeat Simple_repeat 1 55 0 1195 96 0 0 chr4 21052420 21052576 -163236086 + AluSg/x SINE Alu 154 309 -3 230 303 124 28 chr4 21053039 21053086 -163235576 + MIR3 SINE MIR 49 90 -118 959 326 10 59 chr4 21053086 21053574 -163235088 + LTR16B LTR ERVL 1 464 0 230 303 124 28 chr4 21053574 21053671 -163234991 + MIR3 SINE MIR 90 207 -1 2252 108 0 10 chr4 21053792 21054088 -163234574 - AluSx SINE Alu -19 293 1 2300 88 0 7 chr4 21054278 21054575 -163234087 + AluY SINE Alu 1 295 -16 2360 94 0 23 chr4 21054585 21054893 -163233769 + AluSx SINE Alu 1 301 -11 2095 114 7 20 chr4 21055348 21055469 -163233193 + AluSx SINE Alu 10 131 -181 2844 19 0 0 chr4 21055469 21055778 -163232884 + AluY SINE Alu 1 309 -2 2095 114 7 20 chr4 21055778 21055962 -163232700 + AluSx SINE Alu 131 311 -1 1876 167 0 10 chr4 21056335 21056646 -163232016 - AluJb SINE Alu -4 308 1 1416 207 13 26 chr4 21056657 21056962 -163231700 - AluJo SINE Alu -11 301 1 788 158 0 16 chr4 21057132 21057259 -163231403 + FLAM_C SINE Alu 4 128 -5 690 299 72 41 chr4 21057529 21058110 -163230552 - L1ME4a LINE L1 -56 6065 5467 953 217 58 0 chr4 21058305 21058512 -163230150 - MER20 DNA MER1_type 0 219 1 744 289 159 56 chr4 21058597 21058855 -163229807 + MLT1L LTR MaLR 21 251 -364 2312 106 3 0 chr4 21058855 21059158 -163229504 + AluSx SINE Alu 1 304 -8 744 289 159 56 chr4 21059158 21059432 -163229230 + MLT1L LTR MaLR 251 608 -7 396 0 0 0 chr4 21059653 21059697 -163228965 + (CA)n Simple_repeat Simple_repeat 1 44 0 214 196 0 22 chr4 21059772 21059818 -163228844 + A-rich Low_complexity Low_complexity 4 48 0 312 372 0 7 chr4 21060116 21060261 -163228401 + (TGGG)n Simple_repeat Simple_repeat 1 144 0 189 264 35 11 chr4 21061018 21061105 -163227557 + L2 LINE L2 3139 3227 -86 1718 184 35 111 chr4 21061478 21061957 -163226705 - LTR47B LTR ERVL 0 443 1 2311 108 3 9 chr4 21062099 21062414 -163226248 + AluSp SINE Alu 1 313 0 23 0 0 0 chr4 21062685 21062708 -163225954 + AT_rich Low_complexity Low_complexity 1 23 0 1574 190 54 0 chr4 21062709 21062988 -163225674 - AluJo SINE Alu -18 294 1 6087 84 15 1 chr4 21063097 21063905 -163224757 + L1PA11 LINE L1 5351 6169 -5 1080 202 22 101 chr4 21063900 21064257 -163224405 + L1MC5 LINE L1 6643 6971 -990 * 2569 214 39 82 chr4 21064278 21064481 -163224181 + L1MC5 LINE L1 6956 7166 -795 2091 128 7 0 chr4 21064481 21064770 -163223892 + AluSx SINE Alu 10 300 -12 2569 214 39 82 chr4 21064770 21065565 -163223097 + L1MC5 LINE L1 7166 7911 -50 436 231 32 39 chr4 21065753 21065909 -163222753 + L2 LINE L2 2231 2385 -929 288 278 103 0 chr4 21065902 21065999 -163222663 + MIR3 SINE MIR 62 168 -40 * 1368 134 140 32 chr4 21067006 21067321 -163221341 + MSTA LTR MaLR 1 398 -30 2144 109 36 13 chr4 21067321 21067625 -163221037 - AluSx SINE Alu -1 311 1 2256 106 0 19 chr4 21068014 21068326 -163220336 + AluSg SINE Alu 2 307 -3 581 153 14 10 chr4 21068825 21068965 -163219697 + MER20B DNA MER1_type 33 216 -3 949 184 69 56 chr4 21069042 21069073 -163219589 + MLT1B LTR MaLR 155 184 -206 186 43 0 0 chr4 21069073 21069096 -163219566 + (TC)n Simple_repeat Simple_repeat 2 24 0 949 184 69 56 chr4 21069096 21069297 -163219365 + MLT1B LTR MaLR 184 390 0 1922 108 24 0 chr4 21069391 21069642 -163219020 - AluSq SINE Alu -48 265 9 251 323 8 8 chr4 21069666 21069796 -163218866 + L2 LINE L2 1932 2061 -1253 225 0 0 0 chr4 21069849 21069874 -163218788 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 187 314 0 0 chr4 21069977 21070028 -163218634 + L2 LINE L2 3263 3313 0 192 375 0 0 chr4 21070054 21070118 -163218544 + L2 LINE L2 2217 2280 -1034 222 128 0 0 chr4 21071222 21071261 -163217401 + (CA)n Simple_repeat Simple_repeat 1 39 0 226 51 26 51 chr4 21072573 21072612 -163216050 + MER5A DNA MER1_type 39 76 -113 2076 131 13 3 chr4 21072612 21072910 -163215752 + AluJo SINE Alu 1 301 -11 28 48 0 0 chr4 21073228 21073270 -163215392 + AT_rich Low_complexity Low_complexity 1 42 0 8938 133 67 43 chr4 21073541 21075200 -163213462 - pTR5 LTR ERV1 0 2438 741 299 207 0 0 chr4 21075552 21075610 -163213052 - MER94 DNA DNA -76 58 1 1001 186 51 140 chr4 21075737 21076108 -163212554 - MER58B DNA MER1_type -1 340 3 2023 117 18 7 chr4 21076117 21076399 -163212263 - AluSx SINE Alu -22 290 6 185 200 0 0 chr4 21076585 21076615 -163212047 + L2 LINE L2 3224 3253 -19 2417 94 7 0 chr4 21076624 21076932 -163211730 - AluSp SINE Alu -3 310 1 226 210 202 48 chr4 21076959 21077083 -163211579 + L1ME LINE L1 5772 5914 -207 473 194 0 20 chr4 21077611 21077709 -163210953 - L2 LINE L2 -10 3303 3208 469 293 91 9 chr4 21078024 21078256 -163210406 - L2 LINE L2 -558 2756 2506 2256 93 0 7 chr4 21078266 21078595 -163210067 - AluSx SINE Alu 0 327 1 812 172 35 12 chr4 21078647 21078816 -163209846 - L1MB8 LINE L1 -2 6176 6004 963 161 180 9 chr4 21078841 21079063 -163209599 - L1MB8 LINE L1 -402 5776 5517 231 188 62 0 chr4 21079065 21079129 -163209533 - L2 LINE L2 -608 2706 2639 220 315 206 0 chr4 21079810 21079902 -163208760 - L2 LINE L2 -245 3068 2958 192 307 0 57 chr4 21080920 21081008 -163207654 + MIR SINE MIR 49 131 -77 2440 91 3 0 chr4 21081399 21081706 -163206956 - AluSp SINE Alu -5 308 1 1639 163 36 4 chr4 21081924 21082230 -163206432 + AluJb SINE Alu 1 315 0 309 191 0 29 chr4 21082439 21082507 -163206155 - MER5B DNA MER1_type 0 178 113 553 208 57 158 chr4 21082575 21082817 -163205845 - L1MC4 LINE L1 -5 8037 7772 1516 85 0 0 chr4 21082817 21083005 -163205657 - AluSc SINE Alu -2 307 120 553 208 57 158 chr4 21083005 21083023 -163205639 - L1MC4 LINE L1 -270 7772 7754 2108 110 0 7 chr4 21083023 21083314 -163205348 - AluSc SINE Alu -20 289 1 553 208 57 158 chr4 21083314 21083509 -163205153 - L1MC4 LINE L1 -288 7754 7627 1712 160 14 0 chr4 21083540 21083834 -163204828 + L1PB4 LINE L1 5858 6155 -1 223 264 69 14 chr4 21084116 21084188 -163204474 - L2 LINE L2 -8 3264 3189 2365 85 0 10 chr4 21084226 21084521 -163204141 - AluSp SINE Alu -21 292 1 1366 235 128 42 chr4 21084759 21085330 -163203332 + L1ME2 LINE L1 5546 6334 0 633 290 74 37 chr4 21085577 21085662 -163203000 + L1MEc LINE L1 1259 1339 -1237 1534 145 118 12 chr4 21085662 21085917 -163202745 + AluJo SINE Alu 18 299 -13 633 290 74 37 chr4 21085917 21086326 -163202336 + L1MEc LINE L1 1339 1835 -741 25 65 0 0 chr4 21086349 21086395 -163202267 + AT_rich Low_complexity Low_complexity 1 46 0 1574 157 36 39 chr4 21086415 21086720 -163201942 + AluJo SINE Alu 9 312 0 217 281 207 0 chr4 21087283 21087365 -163201297 + L2 LINE L2 3214 3312 -1 218 365 59 0 chr4 21087412 21087497 -163201165 + L2 LINE L2 3205 3294 -19 201 213 25 113 chr4 21088510 21088590 -163200072 + L2 LINE L2 3200 3272 0 191 327 71 26 chr4 21090110 21090223 -163198439 - MIR3 SINE MIR -78 130 13 1069 235 58 8 chr4 21090772 21090952 -163197710 + MER20B DNA MER1_type 283 481 -302 2132 147 0 0 chr4 21090952 21091258 -163197404 - AluSx SINE Alu -6 306 1 1069 235 58 8 chr4 21091258 21091337 -163197325 + MER20B DNA MER1_type 481 555 -228 * 1975 161 24 9 chr4 21091325 21091660 -163197002 + MER2 DNA MER2_type 6 345 0 236 196 178 56 chr4 21091721 21091828 -163196834 + MER20B DNA MER1_type 664 783 0 312 238 191 36 chr4 21092177 21092345 -163196317 - MIR SINE MIR -11 251 57 787 156 15 30 chr4 21092447 21092582 -163196080 - AluJo SINE Alu -177 135 3 2092 95 42 18 chr4 21092874 21093159 -163195503 - AluSx SINE Alu -20 292 1 1912 125 62 0 chr4 21093164 21093452 -163195210 - AluSx SINE Alu -6 306 1 957 171 0 0 chr4 21094006 21094158 -163194504 + FRAM SINE Alu 1 152 -14 207 0 0 0 chr4 21094161 21094184 -163194478 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 290 292 31 10 chr4 21095293 21095389 -163193273 + L2 LINE L2 2955 3052 -220 211 313 112 15 chr4 21096047 21096181 -163192481 - MER5A DNA MER1_type -41 148 2 681 252 102 18 chr4 21096398 21096731 -163191931 - Charlie7 DNA MER1_type -240 2372 2012 405 267 153 35 chr4 21097457 21097659 -163191003 - MLT1J2 LTR MaLR -157 293 68 1685 109 0 9 chr4 21097715 21097944 -163190718 - AluSc SINE Alu -19 290 64 216 0 0 0 chr4 21098015 21098039 -163190623 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1345 171 116 27 chr4 21098042 21098300 -163190362 - AluJo SINE Alu -31 281 1 485 211 105 9 chr4 21098370 21098484 -163190178 + L2 LINE L2 3189 3313 0 26 0 0 0 chr4 21098684 21098710 -163189952 + AT_rich Low_complexity Low_complexity 1 26 0 1205 223 119 52 chr4 21099092 21099275 -163189387 + L1ME3 LINE L1 5007 5176 -986 2049 119 3 55 chr4 21099275 21099586 -163189076 + AluSx SINE Alu 1 295 -17 1205 223 119 52 chr4 21099586 21099665 -163188997 + L1ME3 LINE L1 5176 5248 -914 645 191 15 44 chr4 21099665 21099801 -163188861 + FLAM_C SINE Alu 1 132 -1 1205 223 119 52 chr4 21099801 21099932 -163188730 + L1ME3 LINE L1 5248 5369 -793 317 61 0 20 chr4 21099932 21099981 -163188681 + (TTAAA)n Simple_repeat Simple_repeat 3 50 0 1205 223 119 52 chr4 21099981 21100134 -163188528 + L1ME3 LINE L1 5369 5510 -652 7679 26 10 1 chr4 21100134 21101150 -163187512 + L1PA4 LINE L1 5131 6154 -1 1205 223 119 52 chr4 21101150 21101691 -163186971 + L1ME3 LINE L1 5510 6162 0 1956 115 97 6 chr4 21101993 21102324 -163186338 - MER46B DNA MER2_type 0 236 1 2236 245 166 17 chr4 21102772 21103695 -163184967 - HAL1 LINE L1 -698 1809 750 621 319 125 12 chr4 21103759 21104095 -163184567 - HAL1 LINE L1 -1873 634 261 657 172 91 131 chr4 21104101 21104258 -163184404 + Charlie7 DNA MER1_type 1631 1772 -840 1996 115 11 4 chr4 21104258 21104536 -163184126 + AluSc SINE Alu 1 280 -29 657 172 91 131 chr4 21104536 21104675 -163183987 + Charlie7 DNA MER1_type 1772 1915 -697 22 0 0 0 chr4 21104714 21104736 -163183926 + AT_rich Low_complexity Low_complexity 1 22 0 781 214 0 19 chr4 21104805 21104959 -163183703 - FRAM SINE Alu -15 151 1 477 154 282 13 chr4 21105078 21105227 -163183435 - MER53 DNA DNA 0 189 1 201 74 0 0 chr4 21106134 21106161 -163182501 + (T)n Simple_repeat Simple_repeat 1 27 0 1536 137 49 8 chr4 21106175 21106438 -163182224 + AluJb SINE Alu 24 297 -15 313 276 13 0 chr4 21107104 21107180 -163181482 + L3 LINE CR1 1244 1320 -257 2397 70 20 0 chr4 21107697 21107995 -163180667 + AluSp SINE Alu 1 304 -9 2209 102 7 3 chr4 21108966 21109259 -163179403 - AluSx SINE Alu -18 294 1 2234 69 4 0 chr4 21109677 21109953 -163178709 + AluY SINE Alu 27 303 -8 189 74 0 0 chr4 21110470 21110497 -163178165 + (A)n Simple_repeat Simple_repeat 1 27 0 2153 129 0 0 chr4 21110860 21111154 -163177508 - AluSx SINE Alu -18 294 1 180 0 0 0 chr4 21112914 21112934 -163175728 + (T)n Simple_repeat Simple_repeat 1 20 0 277 259 168 0 chr4 21113139 21113270 -163175392 + L1ME LINE L1 3681 3833 -2313 1790 150 3 18 chr4 21113509 21113795 -163174867 + AluJo SINE Alu 1 282 -30 502 263 129 18 chr4 21114060 21114231 -163174431 - MIR SINE MIR -28 234 45 408 299 124 25 chr4 21114409 21114813 -163173849 + L1ME LINE L1 4509 4952 -1194 281 302 77 6 chr4 21114919 21115088 -163173574 + L1ME LINE L1 4988 5168 -978 336 268 119 49 chr4 21115206 21115420 -163173242 + L1ME LINE L1 5433 5660 -699 247 150 0 0 chr4 21115766 21115806 -163172856 + L2 LINE L2 3214 3253 -19 183 42 0 0 chr4 21116429 21116453 -163172209 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2357 77 3 3 chr4 21116576 21116876 -163171786 + AluSx SINE Alu 1 300 -12 231 137 118 0 chr4 21116974 21117025 -163171637 + L1ME LINE L1 5756 5812 -350 479 221 140 0 chr4 21117025 21117161 -163171501 + MIR SINE MIR 108 262 0 306 209 55 33 chr4 21117457 21117548 -163171114 - MER34 LTR ERV1 0 542 450 906 219 145 37 chr4 21117651 21117975 -163170687 - MER34C LTR ERV1 -226 359 1 23 54 0 0 chr4 21119027 21119064 -163169598 + GC_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr4 21121230 21121252 -163167410 + AT_rich Low_complexity Low_complexity 1 22 0 403 278 83 89 chr4 21121315 21121642 -163167020 - L1M4 LINE L1 -762 5384 5060 339 118 430 21 chr4 21122151 21122244 -163166418 + FLAM_C SINE Alu 1 131 -2 1089 178 105 40 chr4 21122326 21122573 -163166089 - AluJo SINE Alu -49 263 1 2094 133 3 0 chr4 21123367 21123653 -163165009 - AluSx SINE Alu -25 287 1 2127 143 12 12 chr4 21123917 21124252 -163164410 - MER1B DNA MER1_type -1 338 4 2076 75 75 0 chr4 21124682 21124947 -163163715 + AluSc SINE Alu 1 285 -24 814 213 129 52 chr4 21126202 21126512 -163162150 - MER58B DNA MER1_type -4 337 4 408 232 139 60 chr4 21126901 21127203 -163161459 - L1MC4a LINE L1 -1902 5906 5581 2468 68 0 0 chr4 21127233 21127529 -163161133 - AluSc SINE Alu -13 296 1 25 0 0 0 chr4 21127885 21127910 -163160752 + AT_rich Low_complexity Low_complexity 1 25 0 2464 76 0 3 chr4 21128149 21128453 -163160209 + AluY SINE Alu 1 303 -8 2031 134 3 10 chr4 21129287 21129593 -163159069 - AluSq SINE Alu -8 305 2 2173 97 13 10 chr4 21130020 21130319 -163158343 - AluSg1 SINE Alu -9 300 1 288 167 19 19 chr4 21130440 21130494 -163158168 - Tigger5 DNA MER2_type -2269 54 1 293 238 158 20 chr4 21131928 21132029 -163156633 + MIR SINE MIR 50 164 -98 461 290 83 10 chr4 21132175 21132368 -163156294 - L3 LINE CR1 -3 1574 1368 763 263 129 4 chr4 21134668 21134900 -163153762 - MIR SINE MIR -1 261 1 926 323 145 24 chr4 21134918 21135589 -163153073 - L2 LINE L2 -339 2975 2224 1969 153 17 0 chr4 21135635 21135930 -163152732 - AluSx SINE Alu -12 300 1 200 194 0 0 chr4 21135943 21135979 -163152683 + MIR SINE MIR 53 88 -174 201 149 191 0 chr4 21136356 21136403 -163152259 + MIR SINE MIR 152 207 -55 21 0 0 0 chr4 21136591 21136612 -163152050 + AT_rich Low_complexity Low_complexity 1 21 0 886 141 105 144 chr4 21136692 21137005 -163151657 - MER33 DNA MER1_type -14 310 10 328 276 155 17 chr4 21137570 21137686 -163150976 - L2 LINE L2 -2 3270 3139 910 198 71 89 chr4 21137855 21137942 -163150720 + MER33 DNA MER1_type 7 94 -2491 2017 142 10 3 chr4 21137942 21138251 -163150411 + AluJb SINE Alu 1 311 -1 910 198 71 89 chr4 21138251 21138487 -163150175 + MER33 DNA MER1_type 94 324 0 286 348 67 43 chr4 21138492 21138702 -163149960 - L2 LINE L2 -424 2890 2676 1059 283 99 33 chr4 21139157 21139724 -163148938 - L2 LINE L2 -2 3311 2710 1322 189 129 7 chr4 21139749 21140051 -163148611 - MER58B DNA MER1_type -1 340 2 1474 274 95 36 chr4 21140059 21140724 -163147938 - L2 LINE L2 -650 2664 1961 1231 131 0 6 chr4 21140931 21141107 -163147555 + AluSg SINE Alu 13 187 -123 1391 114 10 0 chr4 21141107 21141300 -163147362 + AluSp SINE Alu 101 295 -18 234 0 0 0 chr4 21141315 21141341 -163147321 + (TTG)n Simple_repeat Simple_repeat 2 27 0 21 57 0 0 chr4 21141385 21141420 -163147242 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr4 21141452 21141482 -163147180 + AT_rich Low_complexity Low_complexity 1 30 0 26 50 0 0 chr4 21141937 21141977 -163146685 + AT_rich Low_complexity Low_complexity 1 40 0 857 199 23 23 chr4 21142420 21142636 -163146026 - L1PA2 LINE L1 -4 6151 5936 22 56 0 0 chr4 21142662 21142698 -163145964 + AT_rich Low_complexity Low_complexity 1 36 0 4034 183 61 21 chr4 21143012 21143043 -163145619 - L1MB5 LINE L1 -8 6166 6138 1688 144 58 0 chr4 21143043 21143321 -163145341 - AluJo SINE Alu -18 294 1 4034 183 61 21 chr4 21143321 21144488 -163144174 - L1MB5 LINE L1 -36 6138 4922 185 301 66 52 chr4 21146545 21146681 -163141981 - L2 LINE L2 -491 2823 2686 667 289 63 57 chr4 21146938 21147305 -163141357 - LTR16A LTR ERVL -58 392 24 249 279 78 26 chr4 21149047 21149201 -163139461 - L1ME4a LINE L1 -4 6117 5956 247 247 49 25 chr4 21151469 21151550 -163137112 + MER5A DNA MER1_type 100 182 -7 413 305 111 22 chr4 21154092 21154318 -163134344 - MIR SINE MIR -7 255 5 22 0 0 0 chr4 21155425 21155447 -163133215 + AT_rich Low_complexity Low_complexity 1 22 0 1214 144 0 6 chr4 21156192 21156373 -163132289 - AluJo SINE Alu -25 287 108 9241 44 2 0 chr4 21156375 21157500 -163131162 + L1P LINE L1 7 1133 -5013 7594 26 5 0 chr4 21157500 21159121 -163129541 + L1PA3 LINE L1 4531 6155 0 891 276 85 13 chr4 21159289 21159797 -163128865 - L1MC4a LINE L1 -344 5822 5348 326 252 78 40 chr4 21160138 21160283 -163128379 + MIR SINE MIR 45 192 -60 187 289 0 0 chr4 21160831 21160876 -163127786 - L2 LINE L2 -18 3254 3210 207 0 0 0 chr4 21160879 21160902 -163127760 + (T)n Simple_repeat Simple_repeat 1 23 0 264 246 18 0 chr4 21160934 21160991 -163127671 - MIR SINE MIR -83 125 68 284 322 199 7 chr4 21161975 21162121 -163126541 + MIR SINE MIR 46 219 -43 229 290 0 14 chr4 21162128 21162197 -163126465 + MIR SINE MIR 195 262 0 263 330 31 10 chr4 21162661 21162758 -163125904 + MIR SINE MIR 8 106 -156 468 231 91 28 chr4 21163573 21163716 -163124946 + MLT1H LTR MaLR 382 533 -16 632 328 138 32 chr4 21163742 21164055 -163124607 + L2 LINE L2 1640 1918 -1396 1174 203 132 26 chr4 21164055 21164404 -163124258 + MLT1B LTR MaLR 1 386 -4 632 328 138 32 chr4 21164404 21164627 -163124035 + L2 LINE L2 1918 2233 -1081 278 314 181 25 chr4 21164649 21164853 -163123809 + L2 LINE L2 3028 3263 -50 244 220 17 0 chr4 21164865 21164924 -163123738 + L1MEc LINE L1 10 69 -6327 582 270 128 75 chr4 21164944 21165344 -163123318 + L1MEc LINE L1 216 636 -5760 463 221 42 0 chr4 21165347 21165442 -163123220 - MER20 DNA MER1_type 0 219 121 885 234 43 0 chr4 21165442 21165626 -163123036 - MER20 DNA MER1_type -27 192 1 2723 279 65 13 chr4 21165641 21166272 -163122390 + L1MEc LINE L1 647 1244 -5152 2055 94 17 28 chr4 21166272 21166587 -163122075 + AluSp SINE Alu 1 312 0 2723 279 65 13 chr4 21166587 21166842 -163121820 + L1MEc LINE L1 1244 1484 -4912 2031 172 17 0 chr4 21166842 21167197 -163121465 + MER47A DNA MER2_type 4 364 -2 2723 279 65 13 chr4 21167197 21167575 -163121087 + L1MEc LINE L1 1484 1979 -4417 * 5416 139 59 41 chr4 21167573 21168052 -163120610 + L1PA15 LINE L1 4276 4745 -1420 2149 124 86 12 chr4 21168052 21168391 -163120271 - THE1B LTR MaLR 0 364 1 11801 83 9 5 chr4 21168391 21169964 -163118698 - THE1B-int LTR MaLR 0 1580 1 2064 135 72 26 chr4 21169964 21170312 -163118350 - THE1B LTR MaLR 0 364 1 5416 139 59 41 chr4 21170312 21170863 -163117799 + L1PA15 LINE L1 4745 5284 -881 2188 119 0 0 chr4 21170863 21171157 -163117505 + AluSx SINE Alu 1 294 -18 5416 139 59 41 chr4 21171157 21171973 -163116689 + L1PA15 LINE L1 5284 6161 -4 2416 239 57 23 chr4 21171985 21172063 -163116599 + L1MEc LINE L1 1995 2069 -4146 1576 160 86 0 chr4 21172063 21172331 -163116331 - AluJb SINE Alu -21 291 1 2416 239 57 23 chr4 21172331 21173208 -163115454 + L1MEc LINE L1 2069 2948 -3267 772 140 9 0 chr4 21173208 21173322 -163115340 - FLAM_C SINE Alu -28 115 1 679 194 26 0 chr4 21173330 21173485 -163115177 + L1MEc LINE L1 2946 3104 -3111 616 166 191 0 chr4 21173523 21173680 -163114982 + MER5A DNA MER1_type 1 187 -2 488 320 77 78 chr4 21173704 21174322 -163114340 + L2 LINE L2 2652 3271 -1 926 200 43 11 chr4 21175147 21175332 -163113330 - MER58A DNA MER1_type -3 221 31 857 294 148 46 chr4 21176703 21177664 -163110998 + L2 LINE L2 1293 2351 -963 429 169 0 0 chr4 21178007 21178072 -163110590 - AluJ SINE Alu -52 260 196 398 173 13 38 chr4 21178072 21178168 -163110494 - AluJo SINE Alu -144 158 86 242 298 23 76 chr4 21178211 21178342 -163110320 + L2 LINE L2 2990 3113 -159 213 191 0 64 chr4 21178576 21178623 -163110039 + L2 LINE L2 3261 3304 -9 23 97 0 0 chr4 21178984 21179056 -163109606 + AT_rich Low_complexity Low_complexity 1 72 0 1424 104 25 67 chr4 21180145 21180385 -163108277 + MER30 DNA MER1_type 1 230 0 24 0 0 0 chr4 21180942 21180966 -163107696 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr4 21186597 21186625 -163102037 + AT_rich Low_complexity Low_complexity 1 28 0 194 33 67 0 chr4 21188428 21188458 -163100204 + T-rich Low_complexity Low_complexity 2 33 0 22 0 0 0 chr4 21188988 21189010 -163099652 + AT_rich Low_complexity Low_complexity 1 22 0 36 0 0 0 chr4 21190760 21190796 -163097866 + AT_rich Low_complexity Low_complexity 1 36 0 309 174 0 0 chr4 21191463 21191532 -163097130 + (CA)n Simple_repeat Simple_repeat 2 70 0 22 56 0 0 chr4 21193120 21193156 -163095506 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr4 21193551 21193572 -163095090 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chr4 21193851 21193881 -163094781 + AT_rich Low_complexity Low_complexity 1 30 0 555 277 69 66 chr4 21194992 21195295 -163093367 - L2 LINE L2 -9 3304 3001 224 189 66 123 chr4 21195295 21195401 -163093261 + L2 LINE L2 3118 3217 -96 2349 84 14 0 chr4 21195402 21195699 -163092963 - AluSp SINE Alu -12 301 1 220 216 0 20 chr4 21195829 21195880 -163092782 + (TATG)n Simple_repeat Simple_repeat 2 51 0 3172 115 8 0 chr4 21195882 21196353 -163092309 - L1MC1 LINE L1 -421 5912 5438 459 181 0 0 chr4 21196669 21196752 -163091910 - L1MC/D LINE L1 -647 5686 5604 1675 143 11 29 chr4 21196775 21197055 -163091607 - MER1B DNA MER1_type -64 275 1 209 244 0 115 chr4 21197140 21197218 -163091444 - MIR SINE MIR -21 241 173 460 236 9 0 chr4 21197228 21197338 -163091324 - L1MC4 LINE L1 0 8042 7932 905 154 0 0 chr4 21197338 21197474 -163091188 + AluJo SINE Alu 1 136 -176 31 0 0 0 chr4 21197474 21197505 -163091157 + AT_rich Low_complexity Low_complexity 1 31 0 3643 219 69 31 chr4 21197564 21197964 -163090698 - L1MC4 LINE L1 -122 7920 7536 2536 43 3 0 chr4 21197964 21198265 -163090397 - AluY SINE Alu -9 302 1 3643 219 69 31 chr4 21198265 21198912 -163089750 - L1MC4 LINE L1 -506 7536 6834 193 241 0 93 chr4 21198961 21199015 -163089647 - MIR SINE MIR -96 166 118 1642 165 20 35 chr4 21199570 21199916 -163088746 - L1MB8 LINE L1 -1 6177 5837 2322 73 0 30 chr4 21199935 21200238 -163088424 - AluY SINE Alu -17 294 1 363 252 52 17 chr4 21200864 21200979 -163087683 - L1MC5 LINE L1 -60 7901 7783 279 330 165 11 chr4 21201078 21201266 -163087396 - L2 LINE L2 -9 3263 3047 2007 93 54 0 chr4 21201307 21201586 -163087076 + AluSp SINE Alu 1 294 -19 383 141 77 0 chr4 21202727 21202809 -163085853 + MLT1B LTR MaLR 2 90 -300 1042 99 13 0 chr4 21202810 21202962 -163085700 - AluSg/x SINE Alu -15 295 142 1139 194 12 70 chr4 21202974 21203164 -163085498 + MSTB LTR MaLR 91 290 -136 2031 104 4 4 chr4 21203164 21203444 -163085218 + AluSc SINE Alu 1 280 -29 221 0 35 0 chr4 21203447 21203476 -163085186 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1139 194 12 70 chr4 21203476 21203519 -163085143 + MSTB LTR MaLR 292 314 -112 2003 154 0 0 chr4 21203519 21203831 -163084831 - AluSx SINE Alu 0 312 1 1139 194 12 70 chr4 21203831 21203850 -163084812 + MSTB LTR MaLR 314 333 -93 604 142 7 20 chr4 21203863 21203973 -163084689 + MSTB1 LTR MaLR 249 432 0 1000 107 94 0 chr4 21203973 21204122 -163084540 + MLT1B LTR MaLR 228 390 0 247 235 15 44 chr4 21204299 21204367 -163084295 - L2 LINE L2 -990 2324 2259 229 154 0 0 chr4 21204419 21204458 -163084204 + MIR SINE MIR 110 148 -114 1610 146 0 0 chr4 21204460 21204713 -163083949 + AluSx SINE Alu 1 253 -59 43 0 0 0 chr4 21204830 21204873 -163083789 + AT_rich Low_complexity Low_complexity 1 43 0 198 258 0 76 chr4 21205519 21205585 -163083077 + MIR3 SINE MIR 148 208 0 2400 41 7 0 chr4 21205721 21206013 -163082649 + AluY SINE Alu 1 294 -17 1922 151 3 0 chr4 21206193 21206504 -163082158 - AluJb SINE Alu 0 312 1 232 241 0 19 chr4 21206752 21206806 -163081856 + MER5B DNA MER1_type 1 53 -125 2198 106 0 0 chr4 21207324 21207660 -163081002 + AluSc SINE Alu 3 338 0 502 145 0 24 chr4 21207753 21207836 -163080826 - AluJo SINE Alu -16 296 216 961 170 0 6 chr4 21207837 21208002 -163080660 - AluJo SINE Alu -148 164 1 2159 125 0 0 chr4 21209033 21209345 -163079317 + AluSx SINE Alu 1 312 0 1520 178 22 47 chr4 21209368 21209689 -163078973 + L1MD2 LINE L1 5595 5907 -452 843 104 0 0 chr4 21209689 21209804 -163078858 + AluSg/x SINE Alu 163 277 -35 953 231 64 8 chr4 21209807 21210041 -163078621 + L1MD2 LINE L1 5896 6142 -217 389 233 33 67 chr4 21210046 21210169 -163078493 + L1MD2 LINE L1 6199 6325 -34 216 97 0 0 chr4 21210169 21210200 -163078462 + (TA)n Simple_repeat Simple_repeat 1 31 0 2234 73 0 54 chr4 21210200 21210516 -163078146 - AluSg SINE Alu -11 299 1 389 233 33 67 chr4 21210516 21210541 -163078121 + L1MD2 LINE L1 6323 6343 -16 1928 142 13 10 chr4 21210595 21210906 -163077756 + AluSx SINE Alu 1 312 0 810 293 81 66 chr4 21210938 21211800 -163076862 + L2 LINE L2 2213 3271 -1 442 243 29 19 chr4 21211923 21212026 -163076636 + L2 LINE L2 3210 3313 0 1074 272 35 80 chr4 21212247 21212668 -163075994 + HAL1 LINE L1 427 813 -1694 814 133 16 85 chr4 21212668 21212856 -163075806 - L1PA16 LINE L1 0 6166 5992 1074 272 35 80 chr4 21212856 21213056 -163075606 + HAL1 LINE L1 813 1020 -1487 1961 123 3 10 chr4 21213171 21213473 -163075189 + AluSx SINE Alu 13 312 0 1630 192 0 19 chr4 21213583 21213891 -163074771 - AluJo SINE Alu -10 302 1 1073 127 66 28 chr4 21214305 21214517 -163074145 + L1PA15 LINE L1 5935 6154 -11 294 83 0 0 chr4 21215230 21215266 -163073396 - U2 snRNA snRNA -152 36 1 300 321 36 9 chr4 21215537 21215649 -163073013 + MIR SINE MIR 8 122 -140 576 324 25 12 chr4 21215659 21215900 -163072762 - MLT1J LTR MaLR -10 501 258 728 263 132 18 chr4 21216023 21216304 -163072358 - L2 LINE L2 -2 3311 2999 818 206 0 7 chr4 21216401 21216547 -163072115 - FRAM SINE Alu -31 145 1 290 142 113 142 chr4 21216619 21216725 -163071937 + MLT1J LTR MaLR 155 257 -254 2023 118 0 7 chr4 21216849 21217138 -163071524 + AluSx SINE Alu 13 299 -13 1976 123 7 0 chr4 21217184 21217484 -163071178 + AluSp SINE Alu 1 302 -11 760 239 0 0 chr4 21218213 21218372 -163070290 + MER70-int LTR ERVL 421 579 -4444 * 5102 238 41 21 chr4 21218368 21219765 -163068897 + MER70-int LTR ERVL 1808 3879 -1651 1060 122 0 0 chr4 21219768 21219916 -163068746 - AluSp SINE Alu -19 294 147 3695 211 27 23 chr4 21219918 21220237 -163068425 + MER70-int LTR ERVL 2842 3158 -1865 273 29 0 0 chr4 21220237 21220271 -163068391 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3695 211 27 23 chr4 21220271 21220739 -163067923 + MER70-int LTR ERVL 3158 3632 -1391 2102 116 0 3 chr4 21221010 21221313 -163067349 - AluSx SINE Alu -6 306 5 503 277 57 50 chr4 21222290 21222673 -163065989 + MER70-int LTR ERVL 4471 4856 -167 2791 129 21 46 chr4 21223330 21223809 -163064853 - LTR24 LTR ERV1 0 467 1 314 291 58 0 chr4 21223835 21223921 -163064741 + MLT1J LTR MaLR 323 413 -98 2481 55 3 0 chr4 21223959 21224267 -163064395 - AluY SINE Alu -2 309 1 2046 109 10 3 chr4 21224267 21224569 -163064093 - AluSx SINE Alu -8 304 1 1560 154 0 29 chr4 21224657 21224937 -163063725 + AluJb SINE Alu 1 272 -40 1294 92 0 6 chr4 21224937 21225110 -163063552 - AluSp SINE Alu -141 172 1 448 126 57 151 chr4 21225435 21225498 -163063164 - LTR37A LTR ERV1 0 426 359 1812 142 10 0 chr4 21225498 21225775 -163062887 + AluSx SINE Alu 3 285 -27 198 0 0 0 chr4 21225775 21225797 -163062865 + (CA)n Simple_repeat Simple_repeat 1 22 0 1812 142 10 0 chr4 21225797 21225814 -163062848 + AluSx SINE Alu 285 300 -12 448 126 57 151 chr4 21225814 21225909 -163062753 - LTR37A LTR ERV1 -67 359 283 841 135 0 43 chr4 21225921 21226023 -163062639 + AluJ SINE Alu 2 98 -214 3932 130 29 8 chr4 21226023 21226654 -163062008 - LTR9B LTR ERV1 0 644 1 841 135 0 43 chr4 21226654 21226692 -163061970 + AluJ SINE Alu 98 136 -176 1017 167 6 0 chr4 21226692 21226854 -163061808 + AluJ SINE Alu 137 299 -3 678 191 57 127 chr4 21226856 21227101 -163061561 - LTR37A LTR ERV1 -148 278 56 1578 169 43 0 chr4 21227101 21227223 -163061439 + AluJo SINE Alu 1 116 -196 201 74 0 0 chr4 21227223 21227250 -163061412 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1578 169 43 0 chr4 21227250 21227405 -163061257 + AluJo SINE Alu 116 290 -22 678 191 57 127 chr4 21227405 21227458 -163061204 - LTR37A LTR ERV1 -370 56 1 189 160 43 160 chr4 21227857 21227951 -163060711 - L2 LINE L2 -4 3268 3186 279 137 11 158 chr4 21227990 21228036 -163060626 + LTR8A LTR ERV1 1 28 -699 2061 97 3 16 chr4 21228036 21228347 -163060315 + AluSc SINE Alu 1 307 -2 279 137 11 158 chr4 21228347 21228395 -163060267 + LTR8A LTR ERV1 28 81 -646 198 0 0 0 chr4 21228415 21228437 -163060225 + (CTG)n Simple_repeat Simple_repeat 2 23 0 2131 105 0 16 chr4 21228437 21228615 -163060047 - AluSx SINE Alu -2 310 138 2317 71 0 16 chr4 21228615 21228925 -163059737 - AluY SINE Alu -5 306 2 2131 105 0 16 chr4 21228925 21229061 -163059601 - AluSx SINE Alu -174 138 1 1252 194 14 9 chr4 21229061 21229278 -163059384 + LTR8 LTR ERV1 474 691 0 190 277 64 21 chr4 21229316 21229410 -163059252 - L2 LINE L2 -181 3091 2994 1349 262 51 41 chr4 21229520 21229900 -163058762 + MER34 LTR ERV1 26 401 -141 261 0 0 0 chr4 21229900 21229929 -163058733 + (TG)n Simple_repeat Simple_repeat 2 30 0 1349 262 51 41 chr4 21229929 21229958 -163058704 + MER34 LTR ERV1 401 428 -114 1859 145 0 7 chr4 21229958 21230248 -163058414 - AluJb SINE Alu -24 288 1 1349 262 51 41 chr4 21230248 21230349 -163058313 + MER34 LTR ERV1 428 542 0 1447 178 31 21 chr4 21231133 21231419 -163057243 - AluJb SINE Alu -23 289 1 2038 114 10 0 chr4 21231526 21231825 -163056837 + AluSx SINE Alu 1 302 -10 24 0 0 0 chr4 21231857 21231881 -163056781 + AT_rich Low_complexity Low_complexity 1 24 0 3171 116 38 41 chr4 21231905 21232438 -163056224 + LTR26B LTR ERV1 1 531 0 1912 113 0 38 chr4 21232510 21232644 -163056018 + AluSg SINE Alu 1 139 -171 2118 98 0 22 chr4 21232644 21232961 -163055701 + AluSq SINE Alu 2 311 -2 1912 113 0 38 chr4 21232961 21233144 -163055518 + AluSg SINE Alu 139 306 -4 200 339 0 0 chr4 21233382 21233447 -163055215 + (CG)n Simple_repeat Simple_repeat 1 65 0 238 279 85 47 chr4 21234770 21234899 -163053763 + MIR SINE MIR 113 246 -16 2102 213 29 42 chr4 21235139 21235688 -163052974 - MER34 LTR ERV1 0 542 1 1593 141 3 71 chr4 21236191 21236517 -163052145 - AluSx SINE Alu -8 304 1 818 134 0 24 chr4 21237670 21237797 -163050865 + FLAM_C SINE Alu 17 140 -3 221 135 27 0 chr4 21239512 21239549 -163049113 - MIR SINE MIR -58 150 113 474 283 38 25 chr4 21240361 21240520 -163048142 + MIR SINE MIR 13 173 -89 393 348 28 0 chr4 21241350 21241491 -163047171 - MIR3 SINE MIR -3 205 61 1022 145 0 40 chr4 21241560 21241633 -163047029 - L1MB8 LINE L1 -3 6175 6101 1434 169 74 14 chr4 21241633 21241917 -163046745 - AluJo SINE Alu -1 301 1 1022 145 0 40 chr4 21241917 21242043 -163046619 - L1MB8 LINE L1 -77 6101 5984 444 140 33 0 chr4 21242064 21242164 -163046498 - L1MB8 LINE L1 -494 5680 5573 563 227 25 0 chr4 21242879 21242998 -163045664 + FLAM_A SINE Alu 5 126 -7 2018 125 0 0 chr4 21243021 21243310 -163045352 + AluSx SINE Alu 1 289 -23 1151 196 4 27 chr4 21244230 21244490 -163044172 - AluJb SINE Alu -16 296 43 810 148 16 0 chr4 21244519 21244641 -163044021 - FLAM_C SINE Alu -18 125 2 323 265 81 33 chr4 21244731 21244893 -163043769 - MIR SINE MIR -39 223 51 2102 139 0 0 chr4 21245248 21245558 -163043104 - AluSx SINE Alu -2 310 1 500 312 127 0 chr4 21245637 21245810 -163042852 - MIR SINE MIR -21 241 47 690 203 8 0 chr4 21245837 21245955 -163042707 - FLAM_C SINE Alu -23 120 2 210 295 62 27 chr4 21246529 21246641 -163042021 - L3 LINE CR1 -156 1421 1306 356 172 17 133 chr4 21246641 21246767 -163041895 - Charlie7 DNA MER1_type 0 2612 2512 2240 77 3 0 chr4 21246767 21247067 -163041595 - AluY SINE Alu -10 301 1 356 172 17 133 chr4 21247067 21247120 -163041542 - Charlie7 DNA MER1_type -100 2512 2454 951 118 0 15 chr4 21247131 21247266 -163041396 - AluJo/FLAM SINE Alu -169 133 1 1177 108 0 44 chr4 21247266 21247460 -163041202 - AluSg/x SINE Alu -8 304 118 * 1213 112 0 11 chr4 21247459 21247638 -163041024 - AluSg SINE Alu -133 177 1 407 324 53 27 chr4 21247775 21248096 -163040566 - L2 LINE L2 -219 3053 2721 360 171 71 0 chr4 21248097 21248167 -163040495 - L1ME1 LINE L1 -10 6156 6082 718 210 0 0 chr4 21248175 21248299 -163040363 + FLAM_A SINE Alu 4 127 -6 2832 217 73 31 chr4 21248344 21249011 -163039651 - L1ME1 LINE L1 -72 6094 5387 1964 106 39 0 chr4 21249011 21249295 -163039367 - AluSx SINE Alu -17 295 1 2832 217 73 31 chr4 21249295 21249424 -163039238 - L1ME1 LINE L1 -779 5387 5265 1210 217 99 56 chr4 21249418 21249807 -163038855 - L1ME1 LINE L1 -1094 5052 4640 * 2099 120 0 3 chr4 21249807 21250108 -163038554 - AluJb SINE Alu -10 302 3 1210 217 99 56 chr4 21250108 21250161 -163038501 - L1ME1 LINE L1 -1506 4640 4591 217 309 72 22 chr4 21250224 21250363 -163038299 - L2 LINE L2 -667 2647 2502 717 158 15 15 chr4 21251214 21251347 -163037315 + FLAM_C SINE Alu 1 133 0 1330 42 6 6 chr4 21251365 21251531 -163037131 - AluY SINE Alu -141 170 5 753 251 191 39 chr4 21252356 21252529 -163036133 - L1MC4 LINE L1 -140 7902 7757 2345 85 3 0 chr4 21252529 21252836 -163035826 - AluSp SINE Alu -5 308 1 753 251 191 39 chr4 21252836 21253145 -163035517 - L1MC4 LINE L1 -285 7757 7347 1500 196 27 3 chr4 21253470 21253766 -163034896 - AluJb SINE Alu -9 303 1 596 161 0 27 chr4 21254361 21254473 -163034189 - AluJb SINE Alu -178 134 26 1855 112 58 4 chr4 21254959 21255235 -163033427 - AluSx SINE Alu -21 291 1 826 113 14 56 chr4 21255235 21255377 -163033285 - AluSq/x SINE Alu -176 136 1 2048 111 4 0 chr4 21255454 21255757 -163032905 + AluSc SINE Alu 1 304 0 278 341 33 0 chr4 21256017 21256108 -163032554 + MIR SINE MIR 31 124 -138 362 289 67 30 chr4 21257050 21257185 -163031477 + MIR SINE MIR 113 252 -10 1708 127 11 4 chr4 21257767 21258027 -163030635 + MER2 DNA MER2_type 4 265 -80 340 128 0 0 chr4 21258103 21258150 -163030512 + MER2 DNA MER2_type 298 344 -1 214 257 159 35 chr4 21258410 21258523 -163030139 - L2 LINE L2 -9 3263 3137 2139 89 28 0 chr4 21258888 21259179 -163029483 - AluSx SINE Alu -13 299 1 2091 90 3 7 chr4 21259223 21259511 -163029151 + AluY SINE Alu 1 287 -24 1624 153 16 66 chr4 21259573 21259703 -163028959 + AluJo SINE Alu 1 136 -176 2177 75 7 36 chr4 21259703 21260011 -163028651 - AluSp SINE Alu -14 299 1 1995 86 76 3 chr4 21260012 21260303 -163028359 - AluSx SINE Alu 0 312 1 1624 153 16 66 chr4 21260303 21260490 -163028172 + AluJo SINE Alu 135 304 -8 279 0 0 0 chr4 21261316 21261347 -163027315 + (CA)n Simple_repeat Simple_repeat 1 31 0 239 196 0 0 chr4 21261696 21261742 -163026920 - L2 LINE L2 0 3313 3268 518 156 90 8 chr4 21262067 21262189 -163026473 - HAL1 LINE L1 -110 2397 2266 182 365 19 0 chr4 21262190 21262242 -163026420 + L2 LINE L2 3112 3164 -108 214 196 43 0 chr4 21262295 21262341 -163026321 + (TGAG)n Simple_repeat Simple_repeat 3 50 0 2017 83 7 10 chr4 21262521 21262835 -163025827 - AluSc SINE Alu 0 309 1 855 212 80 14 chr4 21264399 21264611 -163024051 - MIR SINE MIR 0 262 37 1132 156 12 131 chr4 21264705 21265026 -163023636 + AluJo SINE Alu 1 283 -19 2228 81 0 10 chr4 21265026 21265323 -163023339 + AluSg SINE Alu 1 294 -16 1461 152 13 56 chr4 21265348 21265473 -163023189 + AluJo SINE Alu 9 138 -174 2054 90 38 0 chr4 21265473 21265762 -163022900 + AluSx SINE Alu 1 300 -12 1461 152 13 56 chr4 21265762 21265939 -163022723 + AluJo SINE Alu 138 298 -14 1936 131 10 0 chr4 21266542 21266832 -163021830 - AluSx SINE Alu -19 293 1 1192 128 0 36 chr4 21266888 21267084 -163021578 + AluSg/x SINE Alu 106 294 -18 450 250 90 80 chr4 21267147 21267306 -163021356 + L2 LINE L2 2544 2707 -607 836 147 0 16 chr4 21267306 21267435 -163021227 + FLAM_C SINE Alu 1 127 -6 450 250 90 80 chr4 21267435 21267463 -163021199 + L2 LINE L2 2707 2733 -581 1629 171 32 0 chr4 21267704 21267985 -163020677 + AluJb SINE Alu 1 290 -22 1078 157 73 33 chr4 21267998 21268140 -163020522 + Charlie1 DNA MER1_type 2477 2612 -149 2160 92 7 0 chr4 21268140 21268433 -163020229 - AluY SINE Alu -16 295 1 1078 157 73 33 chr4 21268433 21268564 -163020098 + Charlie1 DNA MER1_type 2612 2761 0 386 229 52 143 chr4 21268599 21268830 -163019832 - L2 LINE L2 -1 3312 3103 480 299 256 11 chr4 21268905 21269280 -163019382 + L2 LINE L2 2830 3296 -17 1978 94 17 3 chr4 21269349 21269637 -163019025 + AluSx SINE Alu 1 292 -20 2481 38 0 0 chr4 21269690 21269982 -163018680 + AluY SINE Alu 2 293 -18 1056 207 114 4 chr4 21269988 21270259 -163018403 + AluJb SINE Alu 2 302 0 324 272 35 18 chr4 21270452 21270566 -163018096 - MIR SINE MIR -58 150 35 221 235 78 0 chr4 21271105 21271156 -163017506 - MIR SINE MIR -119 143 89 2268 73 0 13 chr4 21271728 21272041 -163016621 + AluSg SINE Alu 2 310 0 2040 82 18 4 chr4 21272173 21272452 -163016210 - AluSg SINE Alu -27 283 1 233 388 10 0 chr4 21272651 21272754 -163015908 + L2 LINE L2 2723 2826 -488 285 206 52 125 chr4 21272893 21273029 -163015633 + L2 LINE L2 3188 3313 0 417 341 16 0 chr4 21273638 21273767 -163014895 - MIR3 SINE MIR -28 180 50 1962 102 7 3 chr4 21273830 21274113 -163014549 + AluSx SINE Alu 9 292 -20 1813 160 16 0 chr4 21274197 21274504 -163014158 - AluJb SINE Alu 0 312 1 1813 102 0 77 chr4 21274724 21275037 -163013625 - AluY SINE Alu -22 289 1 486 276 138 40 chr4 21275481 21275778 -163012884 - L2 LINE L2 -3 3310 2985 25 0 0 0 chr4 21276421 21276446 -163012216 + AT_rich Low_complexity Low_complexity 1 25 0 1673 140 72 0 chr4 21276552 21276830 -163011832 - AluSq SINE Alu -15 298 1 1586 159 6 41 chr4 21276890 21277205 -163011457 - AluJo SINE Alu -8 304 1 2105 106 3 0 chr4 21277216 21277509 -163011153 - AluSc SINE Alu -15 294 1 2438 118 31 14 chr4 21278888 21279243 -163009419 - THE1B LTR MaLR -3 361 1 2112 121 7 0 chr4 21279316 21279613 -163009049 + AluSx SINE Alu 1 299 -13 277 238 0 16 chr4 21282217 21282280 -163006382 + MIR SINE MIR 131 192 -70 1077 132 0 0 chr4 21282288 21282447 -163006215 + AluSp SINE Alu 137 295 -18 406 86 0 17 chr4 21282876 21282934 -163005728 - Alu SINE Alu -20 292 236 1233 125 115 10 chr4 21283099 21283161 -163005501 - AluSx SINE Alu -91 221 167 2027 100 31 0 chr4 21283161 21283450 -163005212 - AluSc SINE Alu -11 298 1 1233 125 115 10 chr4 21283450 21283587 -163005075 - AluSx SINE Alu -145 167 1 953 85 0 0 chr4 21283918 21284047 -163004615 + AluSg/x SINE Alu 173 301 -9 510 255 121 38 chr4 21284213 21284452 -163004210 + MER90 LTR ERV1 1 259 -316 534 152 0 0 chr4 21284453 21284545 -163004117 + (TG)n Simple_repeat Simple_repeat 2 93 0 904 208 212 4 chr4 21284558 21284813 -163003849 + MER90 LTR ERV1 307 614 0 1667 82 21 4 chr4 21285206 21285439 -163003223 + AluSx SINE Alu 55 291 -21 663 309 127 37 chr4 21285443 21285822 -163002840 + ERVL LTR ERVL 2310 2722 -3042 379 246 60 60 chr4 21286029 21286212 -163002450 + L1ME LINE L1 5525 5707 -414 1803 175 33 19 chr4 21286450 21286810 -163001852 + MLT1A1 LTR MaLR 1 365 0 956 173 226 12 chr4 21287418 21287661 -163001001 - AluJo SINE Alu -7 295 1 1904 152 0 13 chr4 21288256 21288571 -163000091 - AluJb SINE Alu 0 312 2 2019 111 3 3 chr4 21289121 21289419 -162999243 - AluSx SINE Alu -14 298 1 676 296 28 9 chr4 21289478 21289691 -162998971 - MIR SINE MIR 0 262 46 396 296 117 39 chr4 21290281 21290528 -162998134 - MER46C DNA MER2_type -3 335 58 2052 130 0 0 chr4 21290528 21290821 -162997841 - AluSx SINE Alu -19 293 1 396 296 117 39 chr4 21290821 21290880 -162997782 - MER46C DNA MER2_type -280 58 5 291 187 88 0 chr4 21290979 21291070 -162997592 - L1ME4a LINE L1 -15 6106 6008 541 223 79 60 chr4 21291683 21291948 -162996714 - L1MC5 LINE L1 -60 7901 7632 1957 109 18 0 chr4 21292314 21292599 -162996063 - AluSx SINE Alu -21 291 2 2038 91 0 7 chr4 21293226 21293524 -162995138 - AluSg SINE Alu -14 296 1 519 221 195 15 chr4 21293611 21293806 -162994856 + MIR SINE MIR 13 242 -20 674 237 190 37 chr4 21293930 21294332 -162994330 + L2 LINE L2 2570 2909 -404 1877 112 3 86 chr4 21294332 21294374 -162994288 - AluJb SINE Alu -1 311 267 228 35 0 0 chr4 21294374 21294403 -162994259 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 1877 112 3 86 chr4 21294403 21294699 -162993963 - AluJb SINE Alu -45 267 1 674 237 190 37 chr4 21294699 21294848 -162993814 + L2 LINE L2 2909 3313 0 1629 138 15 0 chr4 21295062 21295330 -162993332 - AluSx SINE Alu -40 272 1 263 284 15 0 chr4 21295330 21295397 -162993265 + MER81 DNA DNA 47 114 0 2149 97 0 10 chr4 21296029 21296329 -162992333 - AluSq SINE Alu -16 297 1 2151 83 6 41 chr4 21296388 21296702 -162991960 + AluSg SINE Alu 1 303 -7 509 236 50 45 chr4 21296789 21296988 -162991674 + L1M4 LINE L1 3317 3516 -2630 318 288 52 63 chr4 21297034 21297122 -162991540 - MIR SINE MIR -13 249 162 1850 158 0 0 chr4 21297122 21297426 -162991236 - AluSx SINE Alu -3 309 6 318 288 52 63 chr4 21297426 21297528 -162991134 - MIR SINE MIR -100 162 61 2116 85 0 63 chr4 21297664 21297995 -162990667 - AluSg SINE Alu 0 310 1 186 355 108 64 chr4 21298758 21299009 -162989653 + L2 LINE L2 3007 3268 -4 14418 35 0 2 chr4 21300443 21302940 -162985722 + L1PA5 LINE L1 3650 6154 0 1641 166 20 7 chr4 21303450 21303746 -162984916 - AluJo SINE Alu -12 300 1 454 285 11 62 chr4 21304172 21304351 -162984311 - MIR SINE MIR -70 192 23 2137 105 7 33 chr4 21304546 21304852 -162983810 - AluSx SINE Alu -14 298 1 247 296 74 0 chr4 21305272 21305353 -162983309 + L2 LINE L2 3227 3313 0 2433 87 0 0 chr4 21305500 21305798 -162982864 + AluY SINE Alu 1 298 -13 735 241 7 0 chr4 21305985 21306406 -162982256 + (TCCA)n Simple_repeat Simple_repeat 1 424 0 776 144 0 38 chr4 21307100 21307232 -162981430 - FLAM_C SINE Alu -5 128 2 2720 48 0 3 chr4 21307453 21307764 -162980898 + AluY SINE Alu 1 310 -1 969 225 5 14 chr4 21307810 21308019 -162980643 - MIR SINE MIR -25 237 31 553 256 44 30 chr4 21308266 21308327 -162980335 - MIR SINE MIR 0 262 203 2437 61 20 0 chr4 21308327 21308621 -162980041 - AluY SINE Alu -11 300 1 553 256 44 30 chr4 21308621 21308762 -162979900 - MIR SINE MIR -59 203 57 237 219 47 16 chr4 21309367 21309431 -162979231 + MLT1K LTR MaLR 183 248 -340 180 204 0 82 chr4 21309771 21309820 -162978842 - L2 LINE L2 -5 3267 3223 2284 141 100 50 chr4 21309902 21310383 -162978279 + MLT1D LTR MaLR 1 505 0 194 189 14 95 chr4 21310432 21310506 -162978156 - MIR SINE MIR -114 148 81 749 181 16 0 chr4 21310549 21310676 -162977986 - FLAM_C SINE Alu -10 133 5 1668 179 24 0 chr4 21311049 21311340 -162977322 - AluJo SINE Alu -11 301 4 750 246 22 6 chr4 21312028 21312211 -162976451 - MIR SINE MIR -35 227 42 2085 155 0 0 chr4 21312589 21312899 -162975763 - AluSx SINE Alu -2 310 1 1212 278 116 44 chr4 21312920 21313689 -162974973 - HAL1 LINE L1 0 2507 1684 2343 115 0 0 chr4 21313850 21314154 -162974508 - AluSx SINE Alu -8 304 1 474 238 33 0 chr4 21314338 21314460 -162974202 + MIR SINE MIR 65 190 -72 222 263 28 164 chr4 21315017 21315306 -162973356 + L2 LINE L2 2972 3299 -14 2014 141 3 7 chr4 21315306 21315604 -162973058 - AluJo SINE Alu -15 297 1 222 263 28 164 chr4 21315604 21315685 -162972977 + L2 LINE L2 3299 3288 -25 2452 77 3 0 chr4 21315685 21315983 -162972679 - AluSx SINE Alu -13 299 1 222 263 28 164 chr4 21315983 21316007 -162972655 + L2 LINE L2 3287 3313 0 449 300 96 23 chr4 21317223 21317443 -162971219 + MIR SINE MIR 2 237 -25 2272 98 0 7 chr4 21317466 21317771 -162970891 + AluSq SINE Alu 1 303 -10 3516 219 57 19 chr4 21318071 21318534 -162970128 - L1ME2 LINE L1 -1 6163 5719 2266 113 0 0 chr4 21318534 21318834 -162969828 - AluSx SINE Alu -11 301 2 3516 219 57 19 chr4 21318834 21319132 -162969530 - L1ME2 LINE L1 -445 5719 5366 2076 152 0 3 chr4 21319132 21319434 -162969228 - AluJb SINE Alu -11 301 1 3516 219 57 19 chr4 21319434 21319496 -162969166 - L1ME2 LINE L1 -798 5366 5308 1925 134 13 10 chr4 21319500 21319813 -162968849 + L1P LINE L1 4076 4389 -1757 261 0 0 0 chr4 21319813 21319842 -162968820 + (CA)n Simple_repeat Simple_repeat 2 30 0 2111 145 27 19 chr4 21319910 21320282 -162968380 + THE1C LTR MaLR 1 375 0 208 328 160 0 chr4 21320492 21320617 -162968045 + MIR SINE MIR 88 232 -30 201 74 0 0 chr4 21320865 21320892 -162967770 + (A)n Simple_repeat Simple_repeat 1 27 0 253 386 0 15 chr4 21321103 21321235 -162967427 - MIR SINE MIR -120 142 13 357 295 11 0 chr4 21321690 21321785 -162966877 + MIR3 SINE MIR 65 160 -48 414 278 132 5 chr4 21321951 21322156 -162966506 + L2 LINE L2 1886 2116 -1198 290 216 165 0 chr4 21322192 21322289 -162966373 + L2 LINE L2 2899 3011 -302 359 271 371 6 chr4 21322310 21322480 -162966182 + MIR SINE MIR 15 246 -16 1926 144 0 63 chr4 21322500 21322819 -162965843 - AluSx SINE Alu -11 301 3 578 260 119 22 chr4 21322836 21323063 -162965599 + L2 LINE L2 3047 3295 -18 1688 196 10 3 chr4 21323147 21323453 -162965209 - AluJo SINE Alu 0 312 5 817 291 63 29 chr4 21323844 21324160 -162964502 + MLT2F LTR ERVL 1 327 -336 1088 269 70 36 chr4 21324160 21324573 -162964089 + MLT2F LTR ERVL 237 663 0 225 265 44 0 chr4 21324574 21324642 -162964020 + L2 LINE L2 2978 3048 -224 2242 118 0 9 chr4 21324718 21325033 -162963629 - AluSx SINE Alu 0 312 1 347 186 93 35 chr4 21325052 21325138 -162963524 - L2 LINE L2 -13 3300 3210 337 274 94 18 chr4 21325825 21326048 -162962614 + L1M4 LINE L1 2405 2644 -3502 382 246 156 24 chr4 21326319 21326653 -162962009 + L1M4 LINE L1 2961 3338 -2808 236 352 29 9 chr4 21326919 21327024 -162961638 - MIR SINE MIR -68 140 34 1972 269 28 10 chr4 21327180 21327682 -162960980 + L1PB1 LINE L1 1 511 -5380 2176 206 64 13 chr4 21327684 21328517 -162960145 + L1PB1 LINE L1 684 1244 -4677 * 3142 202 1 22 chr4 21328510 21329159 -162959503 - L1 LINE L1 -1941 4205 3570 6205 96 18 3 chr4 21329159 21330121 -162958541 + L1PB1 LINE L1 5177 6151 0 862 261 28 4 chr4 21330139 21330392 -162958270 + L1PB1 LINE L1 1305 1563 -4407 14143 125 32 25 chr4 21330406 21332676 -162955986 - Tigger1 DNA MER2_type 0 2418 132 1180 143 26 0 chr4 21332675 21332864 -162955798 + Tigger1 DNA MER2_type 2224 2417 -1 * 413 192 0 0 chr4 21332864 21332937 -162955725 + Tigger3(Golem) DNA MER2_type 69 141 -2888 * 1600 149 4 19 chr4 21332935 21333197 -162955465 + Tigger3(Golem) DNA MER2_type 2771 3028 -1 1922 158 0 7 chr4 21333253 21333545 -162955117 - AluJb SINE Alu -22 290 1 9953 156 17 11 chr4 21333586 21336334 -162952328 + L1PB1 LINE L1 3172 5927 -48 467 187 60 22 chr4 21336312 21336446 -162952216 + L1MA8 LINE L1 5972 6110 -5 * 407 63 0 16 chr4 21336620 21336683 -162951979 + L1PB1 LINE L1 6090 6151 0 1870 158 7 7 chr4 21338678 21338994 -162949668 - AluSx SINE Alu 0 312 3 282 328 175 11 chr4 21339348 21339525 -162949137 + L1MC4a LINE L1 5427 5632 -2176 665 293 99 9 chr4 21339548 21339770 -162948892 - MIR SINE MIR -20 242 1 389 227 37 49 chr4 21339783 21339986 -162948676 + L1MC4a LINE L1 5692 5798 -323 1687 161 32 4 chr4 21339991 21340270 -162948392 + AluJb SINE Alu 1 287 -25 253 90 41 49 chr4 21340295 21340417 -162948245 + (TATAA)n Simple_repeat Simple_repeat 1 121 0 198 71 0 0 chr4 21340411 21340439 -162948223 + (TTA)n Simple_repeat Simple_repeat 2 29 0 * 210 356 11 0 chr4 21340758 21340848 -162947814 + L2 LINE L2 3182 3272 0 3371 75 17 9 chr4 21340948 21341414 -162947248 + L1PA10 LINE L1 5699 6168 0 2373 90 0 32 chr4 21341466 21341777 -162946885 + AluSg SINE Alu 1 301 -9 790 155 210 55 chr4 21341868 21342049 -162946613 + MER20 DNA MER1_type 3 211 -8 311 260 145 41 chr4 21342712 21342857 -162945805 + MIR SINE MIR 20 200 -62 1919 153 3 0 chr4 21342857 21343151 -162945511 + AluJb SINE Alu 1 295 -17 311 260 145 41 chr4 21343151 21343222 -162945440 + MIR SINE MIR 200 262 0 1712 218 43 41 chr4 21343664 21344128 -162944534 + MLT1C LTR MaLR 3 467 0 2350 109 0 3 chr4 21344878 21345190 -162943472 - AluSx SINE Alu -1 311 1 853 133 0 52 chr4 21345845 21345980 -162942682 - FLAM_C SINE Alu -5 128 1 295 123 18 18 chr4 21345986 21346043 -162942619 - MIR SINE MIR -55 207 151 2315 110 3 0 chr4 21346064 21346364 -162942298 + AluSx SINE Alu 1 301 -11 202 262 79 37 chr4 21346412 21346576 -162942086 - L2 LINE L2 -261 3011 2841 927 259 28 4 chr4 21347325 21347580 -162941082 + MIR SINE MIR 2 262 0 2315 106 3 3 chr4 21347601 21347913 -162940749 + AluSx SINE Alu 1 312 0 2296 75 0 0 chr4 21347990 21348268 -162940394 + AluSc SINE Alu 21 298 -11 207 224 20 10 chr4 21348363 21348461 -162940201 + GA-rich Low_complexity Low_complexity 4 102 0 183 295 49 0 chr4 21348799 21348860 -162939802 + MER5B DNA MER1_type 115 178 0 648 159 6 99 chr4 21349022 21349204 -162939458 - ORSL DNA AcHobo -110 165 1 263 257 76 0 chr4 21349261 21349366 -162939296 + MLT1L LTR MaLR 489 601 -14 813 157 0 43 chr4 21350027 21350167 -162938495 + AluJo SINE Alu 1 134 -178 2473 71 0 0 chr4 21350439 21350735 -162937927 + AluY SINE Alu 1 296 -15 632 264 155 27 chr4 21350855 21351261 -162937401 - L2 LINE L2 0 3313 2856 884 256 155 43 chr4 21351302 21351347 -162937315 - L2 LINE L2 -584 2730 2691 1847 165 3 25 chr4 21351347 21351663 -162936999 - AluJo SINE Alu -3 309 1 884 256 155 43 chr4 21351663 21352171 -162936491 - L2 LINE L2 -623 2691 2115 367 325 92 6 chr4 21352269 21352432 -162936230 - MIR SINE MIR 0 262 86 1662 182 0 4 chr4 21352741 21353056 -162935606 + AluJo SINE Alu 15 328 0 273 351 115 32 chr4 21353061 21353503 -162935159 - L2 LINE L2 -429 2885 2407 189 132 0 0 chr4 21354275 21354313 -162934349 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 240 293 0 12 chr4 21354854 21354936 -162933726 + L1MEc LINE L1 610 690 -5706 2926 239 114 17 chr4 21354987 21357086 -162931576 + L1MEc LINE L1 692 2956 -3259 224 234 175 80 chr4 21357495 21357632 -162931030 + MIR SINE MIR 5 154 -108 341 322 48 35 chr4 21357662 21357892 -162930770 + LTR67 LTR ERVL 2 234 -323 963 154 0 0 chr4 21358048 21358210 -162930452 + MER3 DNA MER1_type 48 209 0 525 246 156 5 chr4 21358257 21358456 -162930206 + LTR67 LTR ERVL 329 557 0 485 258 126 0 chr4 21359169 21359320 -162929342 + MIR SINE MIR 25 194 -68 2018 139 3 7 chr4 21359414 21359716 -162928946 + AluJb SINE Alu 3 303 -9 396 275 58 88 chr4 21359718 21359848 -162928814 - MIR SINE MIR 0 262 134 2431 91 0 0 chr4 21359848 21360156 -162928506 + AluSc SINE Alu 1 308 -1 396 275 58 88 chr4 21360156 21360260 -162928402 - MIR SINE MIR -128 134 28 354 256 51 90 chr4 21360604 21360838 -162927824 - MIR SINE MIR -5 257 33 247 229 20 144 chr4 21360969 21361122 -162927540 + L2 LINE L2 3138 3271 -1 398 239 23 0 chr4 21362784 21362872 -162925790 + MIR SINE MIR 64 153 -55 560 153 0 0 chr4 21362884 21362969 -162925693 + AluJ/FLAM SINE Alu 1 85 -227 1964 149 0 7 chr4 21362990 21363285 -162925377 - AluSq SINE Alu -20 293 1 860 144 8 0 chr4 21363299 21363424 -162925238 - AluJo SINE Alu -176 136 11 21 0 0 0 chr4 21364445 21364466 -162924196 + AT_rich Low_complexity Low_complexity 1 21 0 349 311 72 48 chr4 21365812 21365868 -162922794 - MER5B DNA MER1_type -7 171 118 2001 119 3 13 chr4 21365868 21366205 -162922457 + AluSc SINE Alu 1 309 0 349 311 72 48 chr4 21366205 21366315 -162922347 - MER5B DNA MER1_type -60 118 1 27 0 0 0 chr4 21366421 21366448 -162922214 + AT_rich Low_complexity Low_complexity 1 27 0 25 51 0 0 chr4 21366589 21366628 -162922034 + AT_rich Low_complexity Low_complexity 1 39 0 253 277 71 0 chr4 21368068 21368209 -162920453 - L1MC/D LINE L1 -2028 5780 5630 336 273 39 31 chr4 21369128 21369256 -162919406 - MIR SINE MIR -14 248 120 543 185 9 9 chr4 21369271 21369379 -162919283 + FLAM_A SINE Alu 31 138 -4 424 284 181 30 chr4 21369379 21369682 -162918980 + L1ME4a LINE L1 5573 5921 -200 300 224 77 84 chr4 21369713 21369856 -162918806 + L1ME4a LINE L1 5880 6021 -100 2480 87 0 3 chr4 21370210 21370520 -162918142 - AluSx SINE Alu -1 311 3 338 257 152 70 chr4 21371065 21371236 -162917426 - L1ME3A LINE L1 -31 6139 5955 253 308 11 0 chr4 21371240 21371331 -162917331 + L1ME LINE L1 5610 5701 -420 2243 117 0 0 chr4 21371812 21372111 -162916551 - AluSx SINE Alu -13 299 1 390 195 0 13 chr4 21372137 21372214 -162916448 - Tigger5 DNA MER2_type -7 2316 2241 306 200 0 0 chr4 21372227 21372282 -162916380 - Tigger5 DNA MER2_type -2268 55 1 1468 196 138 22 chr4 21372373 21372831 -162915831 - Charlie1b DNA MER1_type -8 515 5 203 61 30 0 chr4 21373022 21373055 -162915607 + (TA)n Simple_repeat Simple_repeat 1 34 0 2522 131 86 22 chr4 21373062 21373610 -162915052 - L1MA6 LINE L1 0 6300 5718 3074 184 45 3 chr4 21373610 21374261 -162914401 - L1MB8 LINE L1 -61 6117 5440 2106 119 7 0 chr4 21374261 21374594 -162914068 - AluSq SINE Alu 0 335 1 4109 108 51 52 chr4 21374611 21375354 -162913308 - L1MA3 LINE L1 -1 6304 5563 24 0 0 0 chr4 21375473 21375497 -162913165 + AT_rich Low_complexity Low_complexity 1 24 0 571 257 84 26 chr4 21375705 21375931 -162912731 + L3 LINE CR1 1221 1459 -118 2420 75 10 0 chr4 21375967 21376260 -162912402 + AluSc SINE Alu 1 296 -13 324 152 76 0 chr4 21376425 21376504 -162912158 - Charlie7 DNA MER1_type -1980 632 548 207 345 0 12 chr4 21376532 21376616 -162912046 - L2 LINE L2 -424 2889 2807 956 240 100 14 chr4 21376875 21377234 -162911428 - Charlie7 DNA MER1_type -1889 723 334 242 216 128 20 chr4 21377420 21377522 -162911140 + L1 LINE L1 3647 3759 -2387 372 314 126 36 chr4 21377814 21378123 -162910539 + L1MC4a LINE L1 4351 4687 -1459 278 322 83 7 chr4 21378168 21378457 -162910205 + L1MC4a LINE L1 4754 5064 -1082 226 356 10 20 chr4 21378713 21378814 -162909848 - L3 LINE CR1 -25 1552 1453 187 236 73 0 chr4 21378919 21378974 -162909688 - L3 LINE CR1 -312 1265 1207 259 342 121 9 chr4 21378987 21379218 -162909444 - L3 LINE CR1 -237 1340 1084 201 349 45 0 chr4 21379723 21379789 -162908873 + L2 LINE L2 3208 3276 -37 22 0 0 0 chr4 21379792 21379814 -162908848 + AT_rich Low_complexity Low_complexity 1 22 0 221 226 94 0 chr4 21379825 21379878 -162908784 - L2 LINE L2 -1342 1972 1915 194 409 151 5 chr4 21380684 21380870 -162907792 + L2 LINE L2 2723 2935 -379 201 213 21 0 chr4 21381545 21381592 -162907070 + T-rich Low_complexity Low_complexity 1 48 0 774 258 61 6 chr4 21382008 21382338 -162906324 - L1MEd LINE L1 -4862 1257 910 519 344 27 54 chr4 21382397 21382621 -162906041 - L2 LINE L2 -207 3106 2889 1339 113 18 5 chr4 21382917 21383138 -162905524 - Tigger4(Zombi) DNA MER2_type -2 2729 2506 347 327 109 42 chr4 21383349 21383630 -162905032 + L2 LINE L2 2741 3033 -280 1465 260 101 25 chr4 21383781 21384415 -162904247 + L1MC4a LINE L1 5263 5944 -1864 391 300 95 80 chr4 21384433 21384896 -162903766 + L1MC4a LINE L1 6039 6508 -1300 975 252 65 74 chr4 21384968 21385577 -162903085 + L1MC5 LINE L1 6614 7213 -762 798 101 0 0 chr4 21385590 21385709 -162902953 + L1M1 LINE L1 5546 5664 -641 303 260 0 10 chr4 21385725 21385829 -162902833 + L1M1 LINE L1 5652 5754 -550 501 98 24 0 chr4 21385938 21386020 -162902642 - MER30 DNA MER1_type -146 84 1 2226 100 3 7 chr4 21386222 21386521 -162902141 - AluSp SINE Alu -15 298 1 24 53 0 0 chr4 21386974 21387012 -162901650 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr4 21387591 21387620 -162901042 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr4 21388048 21388087 -162900575 + AT_rich Low_complexity Low_complexity 1 39 0 379 231 137 8 chr4 21388948 21389065 -162899597 + MER46C DNA MER2_type 172 303 -35 482 267 25 91 chr4 21389176 21389406 -162899256 + MIR SINE MIR 42 260 -2 1934 127 16 0 chr4 21389490 21389813 -162898849 + HSMAR2 DNA Mariner 1 328 -974 5939 124 32 3 chr4 21391231 21392190 -162896472 + HSMAR2 DNA Mariner 315 1301 -1 398 262 34 54 chr4 21393044 21393193 -162895469 + MLT1F1 LTR MaLR 14 159 -383 326 350 0 8 chr4 21393241 21393358 -162895304 + CT-rich Low_complexity Low_complexity 1 116 0 633 273 73 8 chr4 21393385 21393653 -162895009 + MLT1F1 LTR MaLR 236 559 -8 360 272 44 7 chr4 21393898 21394034 -162894628 + MLT1-int LTR MaLR 399 539 -832 2053 140 38 89 chr4 21394034 21394130 -162894532 + MSTB LTR MaLR 1 100 -326 2098 172 69 14 chr4 21394130 21394567 -162894095 + LOR1b LTR ERV1 1 461 0 2053 140 38 89 chr4 21394567 21394833 -162893829 + MSTB LTR MaLR 100 378 -48 1772 161 45 0 chr4 21394833 21395125 -162893537 - AluSx SINE Alu -7 305 1 2053 140 38 89 chr4 21395125 21395162 -162893500 + MSTB LTR MaLR 378 415 -11 1455 126 28 0 chr4 21395162 21395377 -162893285 - AluSg/x SINE Alu -6 306 86 197 33 33 0 chr4 21395378 21395408 -162893254 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 1960 108 26 0 chr4 21395408 21395677 -162892985 - AluSx SINE Alu -31 281 6 2053 140 38 89 chr4 21395677 21395721 -162892941 + MSTB LTR MaLR 413 426 0 280 254 0 0 chr4 21395722 21395793 -162892869 + MLT1-int LTR MaLR 536 606 -765 446 144 8 136 chr4 21395969 21396101 -162892561 + L1M4 LINE L1 101 215 -6327 324 0 0 0 chr4 21396130 21396166 -162892496 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 2974 214 53 24 chr4 21396211 21397103 -162891559 + L1M4 LINE L1 784 1701 -4841 956 288 24 17 chr4 21397178 21397640 -162891022 + L1M4 LINE L1 3730 4194 -2450 850 142 34 0 chr4 21397664 21397812 -162890850 - Tigger1 DNA MER2_type -14 2404 2252 1176 169 59 24 chr4 21397823 21398078 -162890584 + MER21A LTR ERV1 1 264 -667 1903 164 221 15 chr4 21398083 21398539 -162890123 + MER21A LTR ERV1 376 925 -6 5899 115 17 22 chr4 21398546 21399203 -162889459 - Tigger1 DNA MER2_type -175 2243 1591 2103 114 3 32 chr4 21399203 21399518 -162889144 - AluSc SINE Alu -3 306 1 5899 115 17 22 chr4 21399518 21399840 -162888822 - Tigger1 DNA MER2_type -827 1591 1269 1801 167 63 35 chr4 21399841 21400372 -162888290 + MLT2A2 LTR ERVL 1 554 0 5821 142 43 43 chr4 21400372 21401275 -162887387 + HERVL-A2 LTR ERVL 1 903 -4861 182 196 87 120 chr4 21401275 21401367 -162887295 + MER5C DNA MER1_type 10 98 -226 5821 142 43 43 chr4 21401367 21401553 -162887109 + HERVL-A2 LTR ERVL 903 1088 -4676 2131 109 0 0 chr4 21401553 21401829 -162886833 + AluSx SINE Alu 1 276 -36 5821 142 43 43 chr4 21401829 21402052 -162886610 + HERVL-A2 LTR ERVL 1088 1401 -4363 363 89 0 0 chr4 21402056 21402112 -162886550 - HERVL LTR ERVL -1725 3929 3874 582 84 0 0 chr4 21402140 21402223 -162886439 + HERVL-A2 LTR ERVL 3741 3823 -1831 10578 95 16 8 chr4 21402323 21403598 -162885064 + HERVL-A2 LTR ERVL 4104 5396 -258 2388 88 0 31 chr4 21403598 21403917 -162884745 + AluSc SINE Alu 1 309 0 10578 95 16 8 chr4 21403917 21404179 -162884483 + HERVL-A2 LTR ERVL 5396 5654 0 1952 175 30 52 chr4 21404179 21404758 -162883904 + MLT2A2 LTR ERVL 1 554 0 * 6655 154 43 19 chr4 21404758 21405997 -162882665 - Tigger1 DNA MER2_type -1146 1272 3 5445 201 38 56 chr4 21406012 21406133 -162882529 + L1M4 LINE L1 3736 3858 -2326 1773 172 0 20 chr4 21406133 21406436 -162882226 + AluJb SINE Alu 1 297 -15 5445 201 38 56 chr4 21406436 21408228 -162880434 + L1M4 LINE L1 3858 5607 -577 570 216 0 9 chr4 21408229 21408345 -162880317 + FLAM_A SINE Alu 1 115 -18 376 258 30 23 chr4 21408369 21408501 -162880161 - L1P LINE L1 -1989 4157 4025 235 333 58 0 chr4 21408547 21408703 -162879959 - L1MCa LINE L1 -2230 4196 4032 288 118 59 0 chr4 21408748 21408799 -162879863 + L1M4 LINE L1 5400 5453 -721 648 300 90 50 chr4 21408854 21409863 -162878799 - L1MCa LINE L1 -2504 3922 2873 822 259 10 5 chr4 21410664 21410857 -162877805 + MER58A DNA MER1_type 26 219 -5 387 309 97 26 chr4 21410863 21411174 -162877488 - HAL1b LINE L1 -731 617 285 355 258 80 144 chr4 21411213 21411692 -162876970 - L1MCa LINE L1 -1173 1614 976 1186 205 39 11 chr4 21412107 21412390 -162876272 + L1MC2 LINE L1 6025 6315 -29 2043 166 35 53 chr4 21413389 21413823 -162874839 + MSTB LTR MaLR 1 426 0 214 365 61 50 chr4 21414308 21414489 -162874173 - MIR3 SINE MIR -7 201 19 27 49 0 0 chr4 21415900 21415941 -162872721 + AT_rich Low_complexity Low_complexity 1 41 0 2399 72 0 7 chr4 21416008 21416315 -162872347 - AluSp SINE Alu -8 305 1 2371 76 13 0 chr4 21416418 21416721 -162871941 - AluSp SINE Alu -6 307 1 1305 221 43 37 chr4 21417036 21417551 -162871111 + L1ME LINE L1 5236 5597 -567 229 274 24 12 chr4 21417876 21417960 -162870702 - L1MC4 LINE L1 -1341 6701 6617 231 205 0 54 chr4 21417961 21418073 -162870589 + (TA)n Simple_repeat Simple_repeat 1 106 0 247 205 115 0 chr4 21418076 21418154 -162870508 + L1MC4 LINE L1 6617 6703 -1339 247 130 0 0 chr4 21418160 21418206 -162870456 - LTR66 LTR ERVL -171 439 394 1310 209 70 92 chr4 21418310 21418808 -162869854 - Charlie4a DNA MER1_type -3 505 19 1468 85 0 0 chr4 21419103 21419291 -162869371 + AluY SINE Alu 1 188 -123 226 213 0 33 chr4 21419292 21419353 -162869309 + (TA)n Simple_repeat Simple_repeat 1 59 0 948 126 0 0 chr4 21419353 21419480 -162869182 + AluY SINE Alu 168 294 -17 2160 143 6 18 chr4 21420780 21421122 -162867540 + MER1B DNA MER1_type 2 339 0 711 83 16 25 chr4 21422227 21422348 -162866314 - L1MA2 LINE L1 -158 6146 6027 * 1563 168 66 47 chr4 21422334 21422697 -162865965 - L1MC4a LINE L1 -728 7080 6711 692 138 0 9 chr4 21422799 21422908 -162865754 - MLT1A1 LTR MaLR 0 365 258 3507 173 28 77 chr4 21424883 21425706 -162862956 + L1MA7 LINE L1 5509 6291 0 251 327 133 0 chr4 21426358 21426471 -162862191 - L2 LINE L2 -7 3265 3138 249 314 48 48 chr4 21426793 21427003 -162861659 - L2 LINE L2 -1201 2113 1904 550 228 118 121 chr4 21429482 21429838 -162858824 + L2 LINE L2 2958 3312 -1 2456 50 0 0 chr4 21430423 21430723 -162857939 - AluY SINE Alu -11 300 1 4077 131 0 29 chr4 21430731 21431419 -162857243 - L1PA13 LINE L1 -5 6158 5491 2715 298 125 22 chr4 21431725 21431890 -162856772 - L2 LINE L2 -4 3309 3162 2324 64 0 0 chr4 21431890 21432206 -162856456 + AluY SINE Alu 1 316 0 2715 298 125 22 chr4 21432206 21433424 -162855238 - L2 LINE L2 -151 3162 1789 412 241 129 41 chr4 21433425 21433595 -162855067 - L2 LINE L2 -12 3301 3117 643 357 33 7 chr4 21433687 21433959 -162854703 - L2 LINE L2 -2111 1203 925 5687 126 42 11 chr4 21433973 21434942 -162853720 + L1MA4A LINE L1 5302 6300 -3 766 318 193 12 chr4 21434953 21435591 -162853071 - L2 LINE L2 -2405 909 157 392 252 70 9 chr4 21436774 21436889 -162851773 - L2 LINE L2 0 3313 3192 248 245 137 20 chr4 21437434 21437536 -162851126 + MIR SINE MIR 101 214 -48 533 216 45 0 chr4 21438652 21438763 -162849899 - FLAM_A SINE Alu -17 116 1 25 0 0 0 chr4 21490535 21490560 -162798102 + AT_rich Low_complexity Low_complexity 1 25 0 2106 138 47 14 chr4 21491507 21491870 -162796792 - THE1C LTR MaLR 0 375 1 276 348 28 35 chr4 21492415 21492556 -162796106 - L2 LINE L2 -241 3031 2892 23 24 0 24 chr4 21492624 21492648 -162796014 + AT_rich Low_complexity Low_complexity 1 25 -15 2025 116 10 10 chr4 21492648 21492941 -162795721 - AluSx SINE Alu -19 293 1 23 24 0 24 chr4 21492941 21492957 -162795705 + AT_rich Low_complexity Low_complexity 25 40 0 212 355 113 38 chr4 21493048 21493439 -162795223 - L2 LINE L2 -498 2816 2397 244 233 196 38 chr4 21494101 21494234 -162794428 - L2 LINE L2 -2 3311 3158 318 309 122 7 chr4 21494236 21494375 -162794287 + L2 LINE L2 3156 3310 -3 521 212 88 0 chr4 21494803 21494916 -162793746 + MER20 DNA MER1_type 95 217 -2 226 231 118 91 chr4 21495260 21495446 -162793216 + MIR SINE MIR 29 219 -43 2958 122 160 29 chr4 21497241 21498001 -162790661 - Tigger3b DNA MER2_type -1804 1224 565 1712 177 13 3 chr4 21498001 21498301 -162790361 + AluJb SINE Alu 4 306 -6 342 67 0 0 chr4 21498301 21498346 -162790316 + (TA)n Simple_repeat Simple_repeat 2 46 0 2958 122 160 29 chr4 21498346 21498506 -162790156 - Tigger3b DNA MER2_type -2463 565 427 2304 67 7 3 chr4 21498506 21498805 -162789857 + AluY SINE Alu 1 300 -11 2958 122 160 29 chr4 21498805 21498924 -162789738 - Tigger3b DNA MER2_type -2601 427 2 212 186 70 0 chr4 21499503 21499546 -162789116 - L2 LINE L2 0 3313 3268 1102 243 116 32 chr4 21499812 21500245 -162788417 + L1ME3A LINE L1 5685 6153 -17 885 212 0 0 chr4 21500359 21500524 -162788138 + FRAM SINE Alu 1 165 -1 309 234 99 54 chr4 21500546 21500657 -162788005 + MIR SINE MIR 147 262 0 183 442 18 6 chr4 21500712 21500877 -162787785 - L2 LINE L2 -459 2855 2689 202 347 42 0 chr4 21501026 21501098 -162787564 - MIR SINE MIR -159 103 29 21 36 0 0 chr4 21501168 21501196 -162787466 + AT_rich Low_complexity Low_complexity 1 28 0 205 321 0 0 chr4 21501234 21501315 -162787347 + (TA)n Simple_repeat Simple_repeat 2 82 0 24 53 0 0 chr4 21501968 21502006 -162786656 + AT_rich Low_complexity Low_complexity 1 38 0 417 327 170 28 chr4 21502494 21502858 -162785804 - L2 LINE L2 -560 2754 2339 418 57 0 0 chr4 21502862 21502915 -162785747 - MADE1 DNA Mariner 0 80 28 2107 164 28 17 chr4 21503602 21503962 -162784700 - THE1B LTR MaLR 0 364 1 11115 92 20 13 chr4 21503962 21504262 -162784400 - THE1B-int LTR MaLR 0 1580 1284 2204 96 17 3 chr4 21504262 21504553 -162784109 - AluSq SINE Alu -18 295 1 11115 92 20 13 chr4 21504553 21505821 -162782841 - THE1B-int LTR MaLR -296 1284 1 2284 136 28 17 chr4 21505821 21506181 -162782481 - THE1B LTR MaLR 0 364 1 318 258 32 32 chr4 21506443 21506536 -162782126 + L2 LINE L2 2669 2761 -553 21 0 0 0 chr4 21506658 21506679 -162781983 + AT_rich Low_complexity Low_complexity 1 21 0 748 251 64 5 chr4 21507866 21508069 -162780593 + MIR SINE MIR 48 262 0 313 232 192 0 chr4 21508253 21508378 -162780284 - L1MC4 LINE L1 -141 7901 7753 * 758 219 202 8 chr4 21508376 21508614 -162780048 - L1MC4 LINE L1 -1278 6764 6481 22 0 0 0 chr4 21509352 21509374 -162779288 + AT_rich Low_complexity Low_complexity 1 22 0 495 186 0 0 chr4 21509697 21509799 -162778863 + (TATG)n Simple_repeat Simple_repeat 2 103 0 2158 94 3 11 chr4 21509800 21510087 -162778575 - AluSx SINE Alu -27 285 1 21 0 0 0 chr4 21510760 21510781 -162777881 + AT_rich Low_complexity Low_complexity 1 21 0 1012 205 93 0 chr4 21510982 21511187 -162777475 + MER58A DNA MER1_type 1 224 0 773 289 81 78 chr4 21512208 21512775 -162775887 + L2 LINE L2 1689 2257 -1057 1919 138 17 0 chr4 21513153 21513444 -162775218 - AluSx SINE Alu -16 296 1 525 290 172 0 chr4 21515514 21515735 -162772927 - MIR SINE MIR -1 261 3 739 188 196 30 chr4 21515854 21516132 -162772530 + MER33 DNA MER1_type 1 363 0 3138 215 117 26 chr4 21516276 21517419 -162771243 + L1MC4 LINE L1 6707 8042 0 244 238 0 48 chr4 21518195 21518258 -162770404 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 1598 121 9 0 chr4 21518466 21518697 -162769965 + AluSg/x SINE Alu 74 306 -6 205 161 0 0 chr4 21520078 21520109 -162768553 + (TG)n Simple_repeat Simple_repeat 2 32 0 21 89 0 0 chr4 21520330 21520386 -162768276 + GC_rich Low_complexity Low_complexity 1 56 0 26 0 0 0 chr4 21520784 21520810 -162767852 + GC_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr4 21520897 21520928 -162767734 + GC_rich Low_complexity Low_complexity 1 31 0 306 73 0 0 chr4 21521027 21521068 -162767594 + (CGG)n Simple_repeat Simple_repeat 3 43 0 224 271 8 82 chr4 21522104 21522226 -162766436 + L2 LINE L2 3156 3268 -4 919 266 76 58 chr4 21522790 21523185 -162765477 - MLT1I LTR MaLR -3 406 5 224 91 23 0 chr4 21523406 21523450 -162765212 + (TC)n Simple_repeat Simple_repeat 2 46 0 216 67 0 0 chr4 21523450 21523480 -162765182 + (CA)n Simple_repeat Simple_repeat 1 30 0 1822 199 50 11 chr4 21523509 21523890 -162764772 - MSTD LTR MaLR 0 396 1 516 251 87 135 chr4 21524089 21524436 -162764226 - MLT1I LTR MaLR 0 409 80 1341 266 87 42 chr4 21524439 21524958 -162763704 - MLT1H LTR MaLR 0 549 8 2324 102 0 0 chr4 21525321 21525624 -162763038 + AluSq SINE Alu 1 303 -10 310 307 79 43 chr4 21525766 21526179 -162762483 - MLT1G LTR MaLR 0 590 120 24 0 0 0 chr4 21526637 21526661 -162762001 + AT_rich Low_complexity Low_complexity 1 24 0 586 309 39 0 chr4 21527834 21528015 -162760647 - MIR3 SINE MIR -5 203 16 366 280 6 95 chr4 21528049 21528217 -162760445 - MIR SINE MIR -59 203 51 23 33 0 0 chr4 21529433 21529463 -162759199 + AT_rich Low_complexity Low_complexity 1 30 0 1618 106 59 75 chr4 21529613 21529935 -162758727 + THE1C LTR MaLR 4 320 -55 516 108 0 155 chr4 21529950 21530079 -162758583 - MSTA LTR MaLR -319 109 1 2542 274 114 43 chr4 21530168 21531677 -162756985 + HAL1 LINE L1 306 2011 -496 240 235 39 0 chr4 21531741 21531792 -162756870 + L2 LINE L2 3205 3257 -15 186 103 0 0 chr4 21531794 21531823 -162756839 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 239 203 29 43 chr4 21531854 21531923 -162756739 + L2 LINE L2 3205 3272 0 802 282 180 53 chr4 21531951 21532039 -162756623 - MLT1K LTR MaLR 0 588 513 1571 146 75 19 chr4 21532039 21532306 -162756356 + AluSx SINE Alu 1 282 -30 261 0 0 0 chr4 21532315 21532344 -162756318 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 802 282 180 53 chr4 21532344 21532756 -162755906 - MLT1K LTR MaLR -81 507 13 930 188 109 43 chr4 21532935 21533238 -162755424 - MER33 DNA MER1_type -1 323 1 23 0 0 0 chr4 21533978 21534001 -162754661 + AT_rich Low_complexity Low_complexity 1 23 0 213 352 42 0 chr4 21534283 21534354 -162754308 - L2 LINE L2 -8 3264 3191 540 331 23 0 chr4 21534458 21534633 -162754029 + MLT1K LTR MaLR 84 262 -326 2183 138 30 28 chr4 21534674 21535037 -162753625 - THE1B LTR MaLR 0 364 1 318 326 27 48 chr4 21535665 21535812 -162752850 - HAL1 LINE L1 -3 2504 2361 2124 113 0 3 chr4 21535831 21536139 -162752523 + AluSx SINE Alu 1 307 0 2151 155 26 5 chr4 21536359 21536740 -162751922 + MLT1B LTR MaLR 1 389 -1 291 262 71 44 chr4 21536763 21536946 -162751716 - HAL1b LINE L1 -412 936 749 729 296 84 37 chr4 21537279 21537524 -162751138 - HAL1 LINE L1 -757 1750 1518 1745 191 74 29 chr4 21537524 21537901 -162750761 - MSTD LTR MaLR -2 394 1 729 296 84 37 chr4 21537901 21538595 -162750067 - HAL1 LINE L1 -989 1518 733 367 77 15 15 chr4 21538702 21538767 -162749895 + (TC)n Simple_repeat Simple_repeat 1 65 0 251 163 0 0 chr4 21538956 21538999 -162749663 - MLT1I LTR MaLR -267 142 100 801 179 43 0 chr4 21539202 21539342 -162749320 + FRAM SINE Alu 1 146 -30 339 65 0 0 chr4 21539344 21539390 -162749272 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 949 204 0 0 chr4 21539781 21539948 -162748714 + AluJb SINE Alu 130 296 -16 1277 236 57 9 chr4 21540473 21540804 -162747858 - MLT1C LTR MaLR 0 467 121 435 311 102 11 chr4 21540901 21541078 -162747584 - MER91A DNA MER1_type -1 195 3 233 235 12 99 chr4 21541199 21541280 -162747382 - L2 LINE L2 0 3313 3240 283 273 25 41 chr4 21541639 21541760 -162746902 + MARNA DNA Mariner 461 579 -7 344 219 86 33 chr4 21542005 21542164 -162746498 + L1M4 LINE L1 4357 4539 -1607 421 287 79 30 chr4 21542667 21542869 -162745793 - L2 LINE L2 -94 3219 3008 24 0 0 0 chr4 21543103 21543127 -162745535 + AT_rich Low_complexity Low_complexity 1 24 0 2549 202 86 17 chr4 21543411 21543995 -162744667 + MLT1E3 LTR MaLR 1 624 0 722 276 129 31 chr4 21544426 21544965 -162743697 - L1ME3A LINE L1 -219 5951 5317 2126 111 7 7 chr4 21544965 21545262 -162743400 - AluSx SINE Alu -15 297 1 722 276 129 31 chr4 21545262 21545418 -162743244 - L1ME3A LINE L1 -853 5317 5178 1609 220 11 35 chr4 21545428 21545800 -162742862 + MLT1A2 LTR MaLR 12 374 0 971 256 57 60 chr4 21545800 21546382 -162742280 - L1ME3A LINE L1 -963 5183 4604 562 273 58 34 chr4 21546405 21546819 -162741843 - L1MC5 LINE L1 -49 7912 7489 626 343 112 40 chr4 21547249 21548069 -162740593 - L2 LINE L2 -452 2862 1984 885 201 6 11 chr4 21548077 21548251 -162740411 - MLT1B LTR MaLR -11 379 207 313 149 115 115 chr4 21548240 21548327 -162740335 - MLT1B LTR MaLR -303 87 1 * 1764 167 7 11 chr4 21548546 21548833 -162739829 + AluJb SINE Alu 5 290 -22 1814 184 105 77 chr4 21549454 21549958 -162738704 + MLT2B1 LTR ERVL 1 518 -2 232 254 32 85 chr4 21550220 21550409 -162738253 + LTR67 LTR ERVL 356 534 -23 272 332 121 36 chr4 21550465 21550854 -162737808 - L2 LINE L2 -962 2352 1931 214 298 0 0 chr4 21551003 21551060 -162737602 - MIR SINE MIR -148 114 58 1841 131 42 63 chr4 21551095 21551478 -162737184 + THE1C LTR MaLR 1 375 0 587 317 18 22 chr4 21552055 21552279 -162736383 + MIR SINE MIR 31 253 -9 24 0 0 0 chr4 21553090 21553114 -162735548 + AT_rich Low_complexity Low_complexity 1 24 0 444 180 40 0 chr4 21553326 21553426 -162735236 - L1MA9 LINE L1 -2 6310 6207 518 124 11 0 chr4 21553475 21553564 -162735098 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 191 317 49 12 chr4 21554363 21554445 -162734217 - L2 LINE L2 -50 3263 3179 289 291 103 34 chr4 21554778 21554953 -162733709 - MIR SINE MIR -56 206 20 2049 130 0 13 chr4 21555382 21555682 -162732980 + AluSx SINE Alu 1 296 -16 30 27 0 0 chr4 21556225 21556262 -162732400 + AT_rich Low_complexity Low_complexity 1 37 0 25 65 0 0 chr4 21556647 21556693 -162731969 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr4 21556817 21556839 -162731823 + AT_rich Low_complexity Low_complexity 1 22 0 279 156 0 0 chr4 21556961 21557006 -162731656 - MLT2B2 LTR ERVL -1 514 470 2065 227 45 22 chr4 21557056 21557519 -162731143 - MLT2B2 LTR ERVL -41 474 1 26 30 0 0 chr4 21557555 21557588 -162731074 + AT_rich Low_complexity Low_complexity 1 33 0 27 29 0 0 chr4 21557793 21557827 -162730835 + AT_rich Low_complexity Low_complexity 1 34 0 2585 207 81 7 chr4 21557857 21558460 -162730202 + MER82 DNA MER2_type 2 649 -4 392 288 131 38 chr4 21558713 21559026 -162729636 - HAL1 LINE L1 -936 1571 1230 1820 189 57 47 chr4 21559211 21559600 -162729062 - L1M4 LINE L1 -1150 5494 5097 1932 149 28 0 chr4 21559600 21559882 -162728780 - AluSx SINE Alu -22 290 1 1820 189 57 47 chr4 21559882 21559983 -162728679 - L1M4 LINE L1 -1547 5097 4999 929 285 12 12 chr4 21559962 21560292 -162728370 - L1M4 LINE L1 -2039 4605 4276 * 1294 188 59 49 chr4 21560308 21560596 -162728066 - AluJo SINE Alu -21 291 1 1451 218 69 17 chr4 21560596 21561118 -162727544 - L1M4 LINE L1 -3106 3538 2990 5109 225 62 39 chr4 21561133 21561977 -162726685 - L1M4 LINE L1 -4584 2062 1238 3005 187 21 44 chr4 21561977 21562591 -162726071 + MER77 LTR ERV1 2 601 -4 5109 225 62 39 chr4 21562591 21563753 -162724909 - L1M4 LINE L1 -5408 1238 16 2290 75 0 0 chr4 21564248 21564589 -162724073 - AluY SINE Alu 0 341 1 243 289 22 11 chr4 21564659 21564749 -162723913 + CT-rich Low_complexity Low_complexity 5 95 0 259 329 32 0 chr4 21564872 21565030 -162723632 + L1ME4a LINE L1 5758 5920 -201 1039 298 133 13 chr4 21565185 21565650 -162723012 + L2 LINE L2 2792 3311 -2 426 336 98 1 chr4 21565931 21566149 -162722513 - MIR SINE MIR -13 249 13 1226 239 91 48 chr4 21566153 21566765 -162721897 - L2 LINE L2 0 3313 2677 1399 251 89 8 chr4 21566768 21567163 -162721499 - L2 LINE L2 -929 2385 1959 1121 204 12 69 chr4 21567857 21568190 -162720472 + MLT2C1 LTR ERVL 36 349 -48 231 36 0 0 chr4 21568215 21568243 -162720419 + (CA)n Simple_repeat Simple_repeat 2 29 0 275 143 0 20 chr4 21568261 21568310 -162720352 + MLT2C1 LTR ERVL 350 397 0 310 402 96 4 chr4 21568455 21568704 -162719958 + L2 LINE L2 3001 3272 0 5235 150 25 26 chr4 21569514 21570535 -162718127 + L1MC3 LINE L1 6766 7784 -1 5238 88 58 11 chr4 21570540 21571360 -162717302 - L1MA3 LINE L1 0 6305 5447 5184 143 24 0 chr4 21571377 21572385 -162716277 + L1PA16 LINE L1 5130 6157 -9 1211 202 16 4 chr4 21572408 21572660 -162716002 - L1MB3 LINE L1 -147 6036 5782 194 128 26 0 chr4 21572918 21572957 -162715705 + GA-rich Low_complexity Low_complexity 5 44 0 279 0 0 0 chr4 21573707 21573738 -162714924 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 211 290 16 0 chr4 21573830 21573892 -162714770 + MIR SINE MIR 200 262 0 1326 228 171 16 chr4 21573955 21574500 -162714162 + LTR50 LTR ERVL 1 629 -166 312 274 69 0 chr4 21574642 21574744 -162713918 - MER63 DNA MER1_type -100 736 2 1907 153 0 17 chr4 21574938 21575226 -162713436 - AluJb SINE Alu -21 291 9 232 333 0 0 chr4 21576137 21576197 -162712465 - MIR SINE MIR -143 119 60 454 246 200 16 chr4 21577009 21577200 -162711462 + MIR SINE MIR 38 260 -2 708 185 7 174 chr4 21577656 21577926 -162710736 + MIR SINE MIR 13 237 -25 232 310 133 9 chr4 21578062 21578175 -162710487 - L2 LINE L2 -435 2879 2753 279 311 19 9 chr4 21578176 21578282 -162710380 - MER63A DNA MER1_type 0 210 104 1181 286 37 13 chr4 21578293 21578667 -162709995 - L2 LINE L2 -555 2759 2377 1997 158 21 34 chr4 21578760 21579139 -162709523 - MLT1A2 LTR MaLR 0 374 1 2334 87 0 10 chr4 21579359 21579659 -162709003 + AluY SINE Alu 1 297 -14 325 150 17 17 chr4 21579836 21579896 -162708766 + MIR SINE MIR 3 62 -200 567 281 35 30 chr4 21579897 21580100 -162708562 - MLT1I LTR MaLR -121 288 85 241 302 47 47 chr4 21580567 21580696 -162707966 + MIR SINE MIR 109 237 -25 345 318 27 18 chr4 21582059 21582169 -162706493 + MIR SINE MIR 81 191 -71 453 299 64 11 chr4 21582186 21582373 -162706289 - L2 LINE L2 -13 3300 3104 1819 163 45 13 chr4 21582376 21582789 -162705873 + MER31A LTR ERV1 1 438 -28 852 337 140 38 chr4 21582940 21583841 -162704821 - L2 LINE L2 -339 2975 1983 367 267 8 0 chr4 21583858 21583989 -162704673 + L1MB7 LINE L1 6035 6166 -18 6529 100 8 11 chr4 21584104 21586415 -162702247 + L1PA10 LINE L1 3781 6167 -1 23 0 0 0 chr4 21586566 21586589 -162702073 + AT_rich Low_complexity Low_complexity 1 23 0 1493 134 4 61 chr4 21586590 21586792 -162701870 - L1PB4 LINE L1 -15 6141 5958 1932 129 10 35 chr4 21586792 21587102 -162701560 - AluY SINE Alu -9 302 1 1493 134 4 61 chr4 21587102 21587176 -162701486 - L1PB4 LINE L1 -198 5958 5881 768 308 83 9 chr4 21587236 21587668 -162700994 + Charlie7 DNA MER1_type 56 519 -2093 512 224 32 68 chr4 21587778 21587997 -162700665 + Charlie7 DNA MER1_type 2170 2380 -232 20139 76 1 0 chr4 21588360 21591120 -162697542 + L1PA5 LINE L1 11 2773 -3373 21225 39 3 0 chr4 21591538 21594911 -162693751 + L1PA5 LINE L1 2777 6152 -2 296 298 100 32 chr4 21594936 21595215 -162693447 + L1ME4a LINE L1 5600 5897 -224 1716 271 48 57 chr4 21595631 21596299 -162692363 - L2 LINE L2 -41 3272 2622 2949 114 38 59 chr4 21596299 21596759 -162691903 + L1MB4 LINE L1 5608 6055 -125 2916 74 0 11 chr4 21596759 21597138 -162691524 - THE1C LTR MaLR 0 375 1 2949 114 38 59 chr4 21597138 21597256 -162691406 + L1MB4 LINE L1 6055 6174 -6 1716 271 48 57 chr4 21597256 21597580 -162691082 - L2 LINE L2 -691 2622 2297 207 209 0 0 chr4 21597731 21597774 -162690888 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 3489 204 52 17 chr4 21599374 21600381 -162688281 - MER69 DNA AcHobo -34 2492 1451 1308 211 31 3 chr4 21600482 21600776 -162687886 - MER69 DNA AcHobo -2224 302 1 187 344 45 45 chr4 21600808 21600965 -162687697 + L2 LINE L2 2827 2983 -289 254 267 129 0 chr4 21601167 21601268 -162687394 + L2 LINE L2 3191 3304 -9 1125 244 50 0 chr4 21601339 21601581 -162687081 + MIR SINE MIR 8 261 -1 321 269 21 11 chr4 21601681 21601774 -162686888 - MIR3 SINE MIR -20 188 95 34 42 0 0 chr4 21602288 21602336 -162686326 + AT_rich Low_complexity Low_complexity 1 48 0 254 29 29 0 chr4 21602857 21602892 -162685770 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 32 0 0 0 chr4 21602996 21603028 -162685634 + AT_rich Low_complexity Low_complexity 1 32 0 316 24 0 0 chr4 21603028 21603070 -162685592 - L1PA6 LINE L1 -3 6151 6110 23 0 0 0 chr4 21603134 21603157 -162685505 + AT_rich Low_complexity Low_complexity 1 23 0 2306 119 0 0 chr4 21604068 21604378 -162684284 - AluSx SINE Alu -2 310 1 616 300 105 46 chr4 21604555 21605058 -162683604 + MLT1K LTR MaLR 20 552 -36 1908 167 49 32 chr4 21605221 21605743 -162682919 - MLT2A2 LTR ERVL -23 531 1 10733 86 5 5 chr4 21605743 21607215 -162681447 - HERVL-A2 LTR ERVL 0 5654 4183 301 317 0 0 chr4 21607254 21607336 -162681326 + L2 LINE L2 2891 2972 -300 496 256 60 8 chr4 21607678 21607811 -162680851 - MIR SINE MIR -73 189 50 612 300 27 34 chr4 21609098 21609115 -162679547 - MIR SINE MIR 0 262 2 743 313 29 24 chr4 21609115 21609361 -162679301 - MIR SINE MIR -14 248 2 462 258 129 54 chr4 21609460 21609646 -162679016 - MIR SINE MIR -44 218 19 23 0 0 0 chr4 21610220 21610243 -162678419 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr4 21610345 21610370 -162678292 + AT_rich Low_complexity Low_complexity 1 25 0 195 367 63 13 chr4 21611688 21611846 -162676816 + L2 LINE L2 3107 3272 0 251 157 20 0 chr4 21611942 21611993 -162676669 + GA-rich Low_complexity Low_complexity 6 57 0 600 243 85 23 chr4 21612003 21612180 -162676482 - MIR SINE MIR -16 246 59 398 248 26 26 chr4 21613386 21613499 -162675163 - LTR67 LTR ERVL -419 138 26 190 227 23 0 chr4 21613751 21613795 -162674867 - L2 LINE L2 -12 3260 3216 332 299 104 19 chr4 21613800 21613954 -162674708 + MIR SINE MIR 13 179 -83 229 289 134 0 chr4 21614061 21614158 -162674504 - MIR SINE MIR -131 131 22 426 39 0 0 chr4 21614524 21614576 -162674086 + (TA)n Simple_repeat Simple_repeat 1 52 0 2124 148 0 66 chr4 21615302 21615740 -162672922 + L1MA5 LINE L1 5892 6300 0 5231 41 6 0 chr4 21617986 21618646 -162670016 + L1PA5 LINE L1 5498 6161 0 469 244 0 0 chr4 21619089 21619204 -162669458 + L1MA9 LINE L1 6174 6288 -24 1062 308 113 31 chr4 21619506 21620334 -162668328 - L2 LINE L2 0 3313 2397 2302 147 36 5 chr4 21620724 21621111 -162667551 - MSTA LTR MaLR -29 399 1 894 267 18 13 chr4 21621300 21621525 -162667137 + MIR SINE MIR 11 236 -26 539 276 83 24 chr4 21621589 21621843 -162666819 + L1ME LINE L1 5474 5742 -379 27 29 0 0 chr4 21621919 21621953 -162666709 + AT_rich Low_complexity Low_complexity 1 34 0 2617 194 65 76 chr4 21621953 21622754 -162665908 - L1ME2 LINE L1 -19 6145 5354 1388 235 68 7 chr4 21622764 21623189 -162665473 - L1ME2 LINE L1 -1070 5076 4626 634 278 27 44 chr4 21623201 21623496 -162665166 + L1MC4a LINE L1 5647 5936 -1872 208 191 0 21 chr4 21623496 21623543 -162665119 + (TA)n Simple_repeat Simple_repeat 1 46 0 698 271 143 40 chr4 21623549 21623900 -162664762 - MLT1K LTR MaLR -75 513 127 716 217 5 26 chr4 21624573 21624762 -162663900 + L1MA2 LINE L1 6117 6301 -3 21 0 0 0 chr4 21625472 21625493 -162663169 + AT_rich Low_complexity Low_complexity 1 21 0 1442 247 48 10 chr4 21625618 21625764 -162662898 - HsTC2 DNA Tc2 2 1900 1761 1607 167 33 25 chr4 21625764 21626039 -162662623 + AluJb SINE Alu 1 277 -35 1442 247 48 10 chr4 21626039 21626305 -162662357 - HsTC2 DNA Tc2 -137 1761 1296 658 304 86 52 chr4 21626296 21626717 -162661945 + MLT1J LTR MaLR 31 465 -46 * 32 43 0 0 chr4 21627808 21627854 -162660808 + AT_rich Low_complexity Low_complexity 1 46 0 554 168 22 36 chr4 21629030 21629167 -162659495 - L1MC1 LINE L1 0 6333 6199 321 235 20 41 chr4 21629438 21629536 -162659126 + L3 LINE CR1 1481 1576 -1 28 0 0 0 chr4 21629645 21629673 -162658989 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 21630787 21630815 -162657847 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 21631525 21631548 -162657114 + AT_rich Low_complexity Low_complexity 1 23 0 7745 19 0 3 chr4 21633304 21634881 -162653781 + L1PA2 LINE L1 4579 6152 -3 889 288 94 38 chr4 21635582 21636042 -162652620 + HAL1b LINE L1 41 541 -807 1692 192 79 84 chr4 21636042 21636598 -162652064 + MLT2B3 LTR ERVL 1 553 -1 889 288 94 38 chr4 21636598 21636710 -162651952 + HAL1b LINE L1 541 645 -703 2579 215 9 40 chr4 21636861 21637108 -162651554 + MER68 LTR ERV1 25 278 -284 2588 45 0 13 chr4 21637108 21637419 -162651243 + AluY SINE Alu 1 307 -4 2579 215 9 40 chr4 21637419 21637725 -162650937 + MER68 LTR ERV1 278 561 -1 2225 196 99 4 chr4 21638149 21638623 -162650039 + MLT2B1 LTR ERVL 2 520 0 249 226 121 40 chr4 21639088 21639212 -162649450 + L1 LINE L1 2896 3029 -3117 300 316 82 39 chr4 21639443 21639649 -162649013 + L1 LINE L1 3085 3299 -2847 1125 118 0 64 chr4 21639793 21639996 -162648666 - L1PA8 LINE L1 0 6172 5983 499 258 96 65 chr4 21640057 21640579 -162648083 + LTR50 LTR ERVL 18 506 -17 329 269 35 0 chr4 21640580 21640758 -162647904 + MIR SINE MIR 107 249 -13 241 317 70 39 chr4 21640797 21641081 -162647581 + L1 LINE L1 3512 3804 -2342 247 145 133 60 chr4 21641158 21641241 -162647421 + L2 LINE L2 2118 2206 -1108 578 253 27 50 chr4 21641241 21641420 -162647242 + MER58C DNA MER1_type 30 214 -1 568 215 8 0 chr4 21641471 21641601 -162647061 - L1ME3A LINE L1 -13 6157 6027 2097 105 10 3 chr4 21642227 21642521 -162646141 - AluSx SINE Alu -16 296 1 31 26 0 0 chr4 21642522 21642560 -162646102 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr4 21642602 21642626 -162646036 + AT_rich Low_complexity Low_complexity 1 24 0 466 297 162 38 chr4 21642823 21643163 -162645499 - L2 LINE L2 -5 3308 2927 842 113 7 0 chr4 21643455 21643597 -162645065 + (TTCC)n Simple_repeat Simple_repeat 1 143 0 254 311 0 71 chr4 21644943 21645126 -162643536 + L2 LINE L2 2804 2973 -341 542 299 116 37 chr4 21645283 21645365 -162643297 - MLT1J2 LTR MaLR -3 447 373 1646 201 58 48 chr4 21645365 21645827 -162642835 - MLT1C LTR MaLR 0 467 1 542 299 116 37 chr4 21645827 21646099 -162642563 - MLT1J2 LTR MaLR -77 373 65 1027 201 114 27 chr4 21646108 21646406 -162642256 - MER5C DNA MER1_type 0 324 1 439 306 9 46 chr4 21646437 21646656 -162642006 + L2 LINE L2 3089 3299 -14 484 251 64 59 chr4 21647387 21647438 -162641224 - MIR SINE MIR -4 258 209 1928 136 44 0 chr4 21647438 21647732 -162640930 - AluSx SINE Alu -4 308 2 484 251 64 59 chr4 21647732 21647867 -162640795 - MIR SINE MIR -53 209 71 189 226 0 0 chr4 21648020 21648073 -162640589 + (TTATG)n Simple_repeat Simple_repeat 3 55 0 342 273 55 27 chr4 21648833 21648943 -162639719 + L2 LINE L2 3160 3272 0 262 349 41 14 chr4 21649019 21649165 -162639497 + MIR SINE MIR 59 208 -54 342 45 0 0 chr4 21649165 21649209 -162639453 + (CA)n Simple_repeat Simple_repeat 1 44 0 5726 229 12 11 chr4 21649209 21650644 -162638018 + L1 LINE L1 2956 4393 -1753 282 29 0 0 chr4 21650644 21650679 -162637983 + (CA)n Simple_repeat Simple_repeat 2 36 0 1121 223 54 11 chr4 21650682 21650784 -162637878 + AluJo SINE Alu 19 115 -197 293 0 0 26 chr4 21650784 21650822 -162637840 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1121 223 54 11 chr4 21650822 21650979 -162637683 + AluJo SINE Alu 115 289 -23 30 27 0 0 chr4 21650979 21651016 -162637646 + AT_rich Low_complexity Low_complexity 1 37 0 565 191 0 0 chr4 21651098 21651187 -162637475 - MER7A DNA MER2_type -259 87 1 6882 169 34 15 chr4 21651274 21652720 -162635942 + L1M2 LINE L1 3956 5431 -743 1144 248 98 40 chr4 21653273 21653802 -162634860 + MLT1E1 LTR MaLR 10 646 -8 937 256 104 16 chr4 21654286 21654603 -162634059 + MLT1J LTR MaLR 17 361 -150 524 242 54 65 chr4 21654628 21654814 -162633848 + MLT1J LTR MaLR 1 184 -327 387 374 34 0 chr4 21655071 21655218 -162633444 + L2 LINE L2 3121 3272 0 2180 127 0 0 chr4 21655462 21655761 -162632901 - AluSx SINE Alu -13 299 1 2100 123 45 31 chr4 21655849 21656208 -162632454 + THE1B LTR MaLR 1 364 0 441 277 7 15 chr4 21656249 21656386 -162632276 + MLT1H LTR MaLR 25 160 -389 4287 119 176 93 chr4 21656531 21657952 -162630710 - pTR5 LTR ERV1 0 2438 743 2384 108 0 0 chr4 21658865 21659171 -162629491 - AluSx SINE Alu -6 306 1 549 299 61 70 chr4 21659334 21659792 -162628870 - MLT1J LTR MaLR -50 461 8 1253 170 62 0 chr4 21660419 21660660 -162628002 - L1PB4 LINE L1 -4 6152 5897 193 0 0 86 chr4 21660663 21660698 -162627964 + (TTAA)n Simple_repeat Simple_repeat 1 32 0 419 190 0 25 chr4 21660699 21660778 -162627884 - FLAM_A SINE Alu -19 123 47 3602 151 32 1 chr4 21660792 21661753 -162626909 - L1PB4 LINE L1 -277 5879 4891 762 240 15 10 chr4 21661858 21662058 -162626604 - L1PB4 LINE L1 0 6156 5956 523 238 11 33 chr4 21662158 21662339 -162626323 - L1ME1 LINE L1 -193 5973 5797 2386 228 74 14 chr4 21662352 21663229 -162625433 - L1M4 LINE L1 -2769 3377 2448 594 230 46 5 chr4 21663228 21663424 -162625238 + L1ME1 LINE L1 5004 5207 -939 * 1170 237 62 25 chr4 21663429 21663783 -162624879 - MLT1A2 LTR MaLR 0 374 8 1639 218 56 126 chr4 21663800 21664510 -162624152 + L1ME1 LINE L1 5218 5844 -322 5110 97 12 0 chr4 21664510 21665193 -162623469 + LTR8 LTR ERV1 1 691 0 1639 218 56 126 chr4 21665193 21665491 -162623171 + L1ME1 LINE L1 5844 6161 -5 625 245 245 19 chr4 21665529 21665892 -162622770 - LTR50 LTR ERVL -349 446 2 242 385 59 30 chr4 21665893 21666028 -162622634 - L2 LINE L2 -31 3241 3103 184 402 0 24 chr4 21666452 21666534 -162622128 + MER5B DNA MER1_type 2 81 -97 504 302 57 60 chr4 21666555 21666853 -162621809 + L2 LINE L2 3016 3312 -1 21 0 0 0 chr4 21667077 21667098 -162621564 + AT_rich Low_complexity Low_complexity 1 21 0 415 293 127 28 chr4 21667282 21667494 -162621168 - MIR SINE MIR 0 262 30 222 353 12 0 chr4 21667618 21667703 -162620959 + L2 LINE L2 3228 3313 0 401 292 64 30 chr4 21667786 21667988 -162620674 - LTR33A LTR ERVL 0 523 315 307 310 86 20 chr4 21668039 21668236 -162620426 - LTR33A LTR ERVL -310 213 4 1387 140 108 7 chr4 21668423 21668772 -162619890 - Ricksha DNA DNA 0 2854 2412 * 2375 195 38 15 chr4 21668763 21668871 -162619791 - Ricksha DNA DNA -2636 610 506 2331 125 5 35 chr4 21668871 21669246 -162619416 + THE1B LTR MaLR 1 364 0 2375 195 38 15 chr4 21669246 21669666 -162618996 - Ricksha DNA DNA -2740 506 70 621 242 57 32 chr4 21669704 21669970 -162618692 + MLT1H LTR MaLR 221 547 -2 708 276 31 16 chr4 21669973 21670165 -162618497 + MIR SINE MIR 57 251 -11 33 25 0 0 chr4 21671167 21671207 -162617455 + AT_rich Low_complexity Low_complexity 1 40 0 608 299 134 0 chr4 21671226 21671450 -162617212 + MIR SINE MIR 3 256 -6 231 204 204 11 chr4 21671450 21671543 -162617119 - L1ME4a LINE L1 -33 6088 5978 387 245 121 58 chr4 21671802 21672125 -162616537 + L1MC/D LINE L1 5491 5832 -303 2362 117 19 19 chr4 21672205 21672580 -162616082 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr4 21672848 21672871 -162615791 + AT_rich Low_complexity Low_complexity 1 23 0 7779 21 0 0 chr4 21673082 21674327 -162614335 - L1PA2 LINE L1 0 6155 4911 8790 26 1 0 chr4 21674329 21675417 -162613245 + L1PA2 LINE L1 3822 4910 -1236 377 222 44 11 chr4 21675630 21675720 -162612942 + MER5A DNA MER1_type 2 94 -95 260 157 0 39 chr4 21676397 21676448 -162612214 - L2 LINE L2 0 3313 3265 1739 93 4 8 chr4 21676782 21677039 -162611623 + L1PA6 LINE L1 5894 6149 -5 1707 213 42 8 chr4 21677972 21678325 -162610337 - MLT1A1 LTR MaLR 0 365 1 300 341 239 16 chr4 21678658 21678913 -162609749 + L2 LINE L2 2961 3272 0 432 262 16 8 chr4 21679247 21679373 -162609289 - MIR SINE MIR -55 207 81 276 352 0 0 chr4 21679487 21679575 -162609087 - MIR SINE MIR 0 262 175 5405 143 19 4 chr4 21679600 21680559 -162608103 + L1MA4 LINE L1 5328 6300 0 22 0 0 0 chr4 21680853 21680875 -162607787 + AT_rich Low_complexity Low_complexity 1 22 0 366 166 1 0 chr4 21680892 21680969 -162607693 + MSTD LTR MaLR 328 396 0 615 314 0 0 chr4 21680969 21681122 -162607540 - MIR SINE MIR -109 153 1 533 296 0 0 chr4 21681127 21681252 -162607410 + MIR SINE MIR 20 144 -118 181 270 0 0 chr4 21681280 21681317 -162607345 + MIR SINE MIR 223 259 -3 301 289 138 28 chr4 21681702 21681955 -162606707 - MLT1J LTR MaLR -3 508 228 2327 108 3 0 chr4 21682008 21682314 -162606348 - AluSq SINE Alu -6 307 1 381 297 69 14 chr4 21682433 21682739 -162605923 + LTR33 LTR ERVL 19 367 -154 213 264 57 0 chr4 21682950 21683003 -162605659 - L2 LINE L2 -2 3311 3256 239 284 0 0 chr4 21683216 21683283 -162605379 - MLT1L LTR MaLR -340 275 209 467 295 81 43 chr4 21683433 21683643 -162605019 + MIR SINE MIR 7 224 -38 200 205 0 77 chr4 21684556 21684634 -162604028 - MIR SINE MIR -46 216 145 968 205 38 0 chr4 21684738 21684948 -162603714 - MER89 LTR ERV1 -7 552 335 463 202 13 58 chr4 21685087 21685298 -162603364 - MER89 LTR ERV1 -259 300 1 277 314 40 65 chr4 21685364 21685488 -162603174 - MIR3 SINE MIR -74 134 14 997 277 68 43 chr4 21685946 21686387 -162602275 - L2 LINE L2 -5 3308 2857 1131 128 6 0 chr4 21687394 21687566 -162601096 + MER2 DNA MER2_type 1 173 -172 369 182 15 0 chr4 21687613 21687679 -162600983 + MER2 DNA MER2_type 279 345 0 519 277 151 0 chr4 21687722 21687881 -162600781 - MER5A DNA MER1_type 0 189 7 188 280 100 0 chr4 21688824 21688874 -162599788 - L2 LINE L2 -9 3304 3250 817 55 18 9 chr4 21688882 21688991 -162599671 - AluY SINE Alu -7 304 195 1872 98 0 0 chr4 21689336 21689572 -162599090 - AluSx SINE Alu -24 288 53 302 309 32 11 chr4 21692820 21692914 -162595748 - MIR SINE MIR -132 130 35 198 316 53 0 chr4 21693008 21693084 -162595578 + MIR SINE MIR 178 257 -5 503 240 156 13 chr4 21693122 21693276 -162595386 + MER5A DNA MER1_type 14 189 0 292 246 14 0 chr4 21693381 21693450 -162595212 - L1MC4a LINE L1 -1067 6741 6672 * 339 241 74 0 chr4 21693447 21693555 -162595107 - L1MC4 LINE L1 -1468 6574 6459 260 393 8 0 chr4 21693654 21693776 -162594886 - L3 LINE CR1 -132 1445 1323 211 213 64 96 chr4 21693885 21693979 -162594683 + MIR SINE MIR 91 181 -81 735 252 64 6 chr4 21694087 21694344 -162594318 + Tigger5 DNA MER2_type 120 2323 0 226 286 16 0 chr4 21694439 21694502 -162594160 + CT-rich Low_complexity Low_complexity 1 64 0 228 279 221 10 chr4 21694502 21694606 -162594056 - L2 LINE L2 -1 3312 3187 21 0 0 0 chr4 21694614 21694635 -162594027 + AT_rich Low_complexity Low_complexity 1 21 0 387 274 41 48 chr4 21694669 21694815 -162593847 - L2 LINE L2 -50 3263 3119 754 243 21 5 chr4 21695881 21696070 -162592592 + LTR33 LTR ERVL 3 194 -327 305 290 63 63 chr4 21696122 21696329 -162592333 + LTR33 LTR ERVL 304 510 -11 247 288 170 26 chr4 21696422 21696575 -162592087 + MIR SINE MIR 52 226 -36 1383 212 12 12 chr4 21696911 21697256 -162591406 - MLT1A1 LTR MaLR -16 349 5 421 271 25 25 chr4 21698029 21698147 -162590515 - L2 LINE L2 -2 3311 3194 186 43 0 0 chr4 21698182 21698205 -162590457 + (CAAAG)n Simple_repeat Simple_repeat 2 24 0 1833 142 69 28 chr4 21699362 21699722 -162588940 - THE1C LTR MaLR 0 375 1 275 286 16 0 chr4 21700137 21700200 -162588462 + L2 LINE L2 3246 3309 -4 264 193 18 37 chr4 21701208 21701317 -162587345 + (TA)n Simple_repeat Simple_repeat 2 108 0 878 288 0 9 chr4 21703254 21703466 -162585196 + MIR SINE MIR 51 260 -2 192 319 115 92 chr4 21703649 21703909 -162584753 + L2 LINE L2 3007 3272 0 3560 209 15 24 chr4 21704053 21705054 -162583608 + L1MB2 LINE L1 4436 5431 -740 1230 160 5 19 chr4 21705054 21705252 -162583410 + AluJb SINE Alu 90 286 -26 360 0 0 0 chr4 21705252 21705292 -162583370 + (CA)n Simple_repeat Simple_repeat 2 41 0 1230 160 5 19 chr4 21705292 21705305 -162583357 + AluJb SINE Alu 286 298 -14 1462 180 33 0 chr4 21705309 21705609 -162583053 + L1MB2 LINE L1 5431 5740 -428 5038 132 13 13 chr4 21705640 21707348 -162581314 - L1PA15 LINE L1 -1 6815 5058 10770 229 25 11 chr4 21707455 21711185 -162577477 - L1PA15 LINE L1 -1722 5075 1280 1290 251 16 39 chr4 21711551 21711937 -162576725 - L1PA15 LINE L1 -6063 724 348 2104 143 47 19 chr4 21711939 21712364 -162576298 + L1MB2 LINE L1 5733 6169 -2 238 272 88 44 chr4 21712715 21712829 -162575833 - MIR SINE MIR -123 139 21 204 182 0 0 chr4 21713176 21713220 -162575442 + (TG)n Simple_repeat Simple_repeat 2 45 0 64 14 0 0 chr4 21713521 21713592 -162575070 + AT_rich Low_complexity Low_complexity 1 71 0 238 309 25 113 chr4 21713803 21713980 -162574682 + L2 LINE L2 2432 2576 -738 1296 180 90 51 chr4 21713980 21714336 -162574326 + MLT1A2 LTR MaLR 1 370 -4 238 309 25 113 chr4 21714336 21714440 -162574222 + L2 LINE L2 2576 2688 -626 1912 219 38 11 chr4 21714444 21714975 -162573687 + L1ME2 LINE L1 5618 6162 -2 978 171 40 11 chr4 21715218 21715394 -162573268 - AluJo SINE Alu -5 307 127 983 293 75 16 chr4 21715820 21716206 -162572456 - LTR16C LTR ERVL -9 482 74 22 0 0 0 chr4 21716468 21716490 -162572172 + AT_rich Low_complexity Low_complexity 1 22 0 211 227 0 23 chr4 21716678 21716722 -162571940 + MIR SINE MIR 107 149 -59 210 326 21 11 chr4 21716787 21716882 -162571780 - L2 LINE L2 -211 3061 2966 240 329 71 34 chr4 21717035 21717330 -162571332 + L2 LINE L2 2670 2975 -339 24 0 0 0 chr4 21717369 21717393 -162571269 + AT_rich Low_complexity Low_complexity 1 24 0 32606 98 16 25 chr4 21717398 21723587 -162565075 - L1PA6 LINE L1 -3 6151 11 210 370 9 76 chr4 21723597 21723808 -162564854 + L2 LINE L2 2990 3186 -86 1902 136 0 0 chr4 21723956 21724233 -162564429 - AluSx SINE Alu 0 302 26 24 0 0 0 chr4 21724907 21724931 -162563731 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr4 21724953 21724977 -162563685 + AT_rich Low_complexity Low_complexity 1 24 0 228 342 47 80 chr4 21725447 21725722 -162562940 - L2 LINE L2 -40 3232 2967 2455 124 13 5 chr4 21726825 21727197 -162561465 - THE1C LTR MaLR 0 375 1 4885 117 30 7 chr4 21727198 21727958 -162560704 - THE1C-int LTR MaLR -1 1579 802 364 265 6 77 chr4 21727958 21728128 -162560534 + L2 LINE L2 3154 3311 -2 180 0 0 0 chr4 21728153 21728173 -162560489 + (T)n Simple_repeat Simple_repeat 1 20 0 1104 159 0 0 chr4 21728195 21728365 -162560297 + THE1-int LTR MaLR 1087 1256 -324 1895 113 0 0 chr4 21728365 21728613 -162560049 - AluSq SINE Alu -65 248 1 217 225 0 0 chr4 21728620 21728660 -162560002 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 973 293 39 81 chr4 21728671 21729187 -162559475 + L2 LINE L2 2807 3300 -13 387 321 29 0 chr4 21729241 21729381 -162559281 + MIR SINE MIR 43 186 -76 769 291 84 4 chr4 21729401 21729638 -162559024 - MIR SINE MIR 0 262 7 230 209 0 0 chr4 21729632 21729675 -162558987 + MIR SINE MIR 219 261 -1 * 38 39 0 0 chr4 21729846 21729898 -162558764 + AT_rich Low_complexity Low_complexity 1 52 0 716 273 16 16 chr4 21730495 21730678 -162557984 - MIR3 SINE MIR -3 205 23 229 254 79 0 chr4 21730893 21731007 -162557655 - L1ME4a LINE L1 -3 6118 5996 23 33 0 0 chr4 21731192 21731222 -162557440 + AT_rich Low_complexity Low_complexity 1 30 0 340 320 162 28 chr4 21731223 21731611 -162557051 - L1M4 LINE L1 -2510 3636 3197 1228 293 54 19 chr4 21731614 21732037 -162556625 + LTR16A LTR ERVL 7 444 -6 3508 287 57 24 chr4 21732046 21733367 -162555295 + HERV16 LTR ERVL 20 1384 -3612 182 200 50 50 chr4 21733384 21733444 -162555218 - L2 LINE L2 -2828 486 427 305 219 27 14 chr4 21733457 21733530 -162555132 + HERV16 LTR ERVL 1477 1550 -3446 550 189 19 9 chr4 21733582 21733688 -162554974 + HERV16 LTR ERVL 1688 1794 -3202 267 235 24 0 chr4 21733712 21733797 -162554865 + L1ME3A LINE L1 3431 3517 -2629 962 155 109 0 chr4 21733853 21734027 -162554635 + MLT1D LTR MaLR 313 505 0 255 219 24 12 chr4 21734091 21734173 -162554489 + L1ME3A LINE L1 4472 4554 -1592 1168 232 92 41 chr4 21734202 21734638 -162554024 + MLT1C LTR MaLR 10 467 0 318 301 20 105 chr4 21734642 21734795 -162553867 + MIR SINE MIR 2 141 -121 241 287 39 78 chr4 21734968 21735198 -162553464 + L1ME3A LINE L1 4674 4894 -1252 1936 100 100 0 chr4 21735287 21735546 -162553116 + AluSg SINE Alu 6 290 -20 661 305 72 21 chr4 21735871 21736183 -162552479 + L1ME3A LINE L1 5280 5575 -595 2301 205 72 33 chr4 21736183 21736753 -162551909 + MLT1E LTR MaLR 2 593 0 661 305 72 21 chr4 21736753 21737090 -162551572 + L1ME3A LINE L1 5575 5962 -208 290 273 58 7 chr4 21737785 21737924 -162550738 + HAL1 LINE L1 1407 1552 -955 2192 191 34 32 chr4 21738095 21738592 -162550070 - MLT1D LTR MaLR -7 498 1 253 227 0 118 chr4 21738660 21738770 -162549892 + MIR SINE MIR 39 135 -73 207 317 0 0 chr4 21738779 21738839 -162549823 - L2 LINE L2 -4 3309 3250 227 246 0 35 chr4 21738881 21738938 -162549724 + MIR SINE MIR 196 250 -12 272 305 110 0 chr4 21739047 21739129 -162549533 - L2 LINE L2 -20 3252 3162 4173 123 5 2 chr4 21739303 21739915 -162548747 - L1PA16 LINE L1 -9 6157 5544 729 205 0 0 chr4 21740291 21740418 -162548244 - FLAM_A SINE Alu -6 127 1 21 0 0 0 chr4 21740847 21740868 -162547794 + AT_rich Low_complexity Low_complexity 1 21 0 598 279 79 6 chr4 21740876 21741041 -162547621 - MIR SINE MIR -55 207 31 283 388 7 7 chr4 21741534 21741686 -162546976 - L2 LINE L2 -594 2720 2569 264 227 0 30 chr4 21741833 21741899 -162546763 - L2 LINE L2 0 3313 3250 251 408 8 0 chr4 21742321 21742441 -162546221 + MIR SINE MIR 34 153 -75 21 0 0 0 chr4 21742515 21742536 -162546126 + AT_rich Low_complexity Low_complexity 1 21 0 509 270 223 9 chr4 21742664 21742879 -162545783 - MIR SINE MIR 0 262 2 313 318 153 11 chr4 21742956 21743145 -162545517 + MIR SINE MIR 3 218 -44 514 253 100 7 chr4 21743642 21743792 -162544870 + MIR SINE MIR 33 196 -66 604 129 0 10 chr4 21744117 21744218 -162544444 - LTR12 LTR ERV1 0 714 615 287 241 23 0 chr4 21744240 21744327 -162544335 - LTR30 LTR ERV1 -110 612 524 681 128 5 5 chr4 21744414 21744534 -162544128 - LTR12 LTR ERV1 -480 234 1 290 277 57 7 chr4 21744558 21744699 -162543963 + L1MC5 LINE L1 7272 7419 -542 * 378 290 38 1 chr4 21744697 21744850 -162543812 + L1MC4 LINE L1 7526 7775 -220 1996 148 33 33 chr4 21744871 21745235 -162543427 - THE1B LTR MaLR 0 364 1 250 282 0 14 chr4 21745354 21745425 -162543237 - MER5B DNA MER1_type -88 90 21 407 222 51 8 chr4 21745453 21745570 -162543092 + L1ME LINE L1 5670 5791 -379 835 228 96 28 chr4 21746772 21747022 -162541640 - MLT1H LTR MaLR 0 549 283 465 247 78 0 chr4 21747429 21747583 -162541079 + MER103 DNA DNA 1 166 0 200 339 30 55 chr4 21748174 21748339 -162540323 + MIR SINE MIR 88 248 -14 493 258 136 72 chr4 21748472 21748848 -162539814 + L2 LINE L2 2901 3300 -13 214 267 100 92 chr4 21749183 21749303 -162539359 + L2 LINE L2 2976 3096 -176 180 0 0 0 chr4 21749377 21749397 -162539265 + (T)n Simple_repeat Simple_repeat 1 20 0 1052 306 92 4 chr4 21749405 21749859 -162538803 + MLT1K LTR MaLR 95 588 0 693 351 39 9 chr4 21751067 21751397 -162537265 + L2 LINE L2 2636 2975 -339 962 194 35 31 chr4 21751423 21751650 -162537012 + MLT1D LTR MaLR 5 232 -273 478 315 165 30 chr4 21751690 21752343 -162536319 - L2 LINE L2 -163 3109 2366 13689 188 32 8 chr4 21752614 21754376 -162534286 - L1PB1 LINE L1 0 6867 5149 234 0 0 0 chr4 21754376 21754402 -162534260 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 13689 188 32 8 chr4 21754402 21758155 -162530507 - L1PB1 LINE L1 -1718 5149 1094 3112 233 70 15 chr4 21758159 21759133 -162529529 - L1PB1 LINE L1 -5817 1046 20 1953 160 7 0 chr4 21759138 21759444 -162529218 - AluSx SINE Alu -4 308 1 1116 120 0 25 chr4 21759446 21759646 -162529016 - L1MA8 LINE L1 -4 6287 6093 722 348 32 32 chr4 21759658 21760063 -162528599 + L3 LINE CR1 947 1351 -226 720 330 48 0 chr4 21761805 21762157 -162526505 - L1MC4a LINE L1 -1934 5857 5489 1929 172 44 6 chr4 21762172 21762533 -162526129 - THE1C LTR MaLR 0 375 1 9298 142 14 44 chr4 21762533 21763764 -162524898 - THE1C-int LTR MaLR 0 1580 408 1991 153 0 0 chr4 21763764 21764051 -162524611 + AluSx SINE Alu 18 304 -8 9298 142 14 44 chr4 21764051 21764446 -162524216 - THE1C-int LTR MaLR -1172 408 3 786 179 40 35 chr4 21764448 21764621 -162524041 - THE1C LTR MaLR 0 375 202 21786 30 1 0 chr4 21764621 21768033 -162520629 + L1PA3 LINE L1 2735 6153 -2 955 152 54 11 chr4 21768141 21768325 -162520337 - THE1C LTR MaLR -183 192 1 358 319 106 24 chr4 21768340 21768547 -162520115 - L1MC4a LINE L1 -2330 5461 5238 346 311 61 17 chr4 21768963 21769143 -162519519 - L1MC4a LINE L1 -1553 4576 4389 680 292 39 34 chr4 21769309 21769775 -162518887 - HAL1 LINE L1 -873 1634 1167 342 253 25 19 chr4 21770131 21770293 -162518369 + L1M4 LINE L1 2251 2413 -3733 238 248 44 80 chr4 21770315 21770428 -162518234 - L1MC4a LINE L1 -5692 427 319 327 283 133 17 chr4 21770804 21770924 -162517738 + MIR SINE MIR 35 168 -94 562 267 149 0 chr4 21771053 21771248 -162517414 + MER58A DNA MER1_type 1 224 0 1559 195 59 49 chr4 21771504 21771894 -162516768 - MSTD LTR MaLR -2 394 1 336 343 47 83 chr4 21772178 21772624 -162516038 + L2 LINE L2 2838 3267 -5 331 292 97 26 chr4 21773590 21773703 -162514959 - MIR SINE MIR -117 145 25 1414 91 10 5 chr4 21773703 21773901 -162514761 - AluY SINE Alu -8 303 105 513 0 0 0 chr4 21773968 21774025 -162514637 + (CA)n Simple_repeat Simple_repeat 2 58 0 1319 230 113 57 chr4 21774113 21774626 -162514036 - MLT1F LTR MaLR 0 542 1 433 194 163 0 chr4 21775016 21775114 -162513548 + MIR3 SINE MIR 42 155 -53 1458 106 0 0 chr4 21775245 21775434 -162513228 + AluSg/x SINE Alu 114 302 -8 315 304 0 0 chr4 21775439 21775518 -162513144 - Charlie8 DNA MER1_type -2206 211 133 3255 115 4 10 chr4 21776521 21777024 -162511638 - LTR3b LTR ERVK 0 500 1 757 252 59 27 chr4 21777077 21777299 -162511363 + MIR SINE MIR 32 260 -2 236 275 14 29 chr4 21777945 21778014 -162510648 + L2 LINE L2 3244 3311 -2 640 287 36 15 chr4 21779038 21779233 -162509429 + MIR SINE MIR 2 200 -62 413 353 58 21 chr4 21780025 21780351 -162508311 - L2 LINE L2 -21 3292 2955 588 266 198 16 chr4 21781162 21781410 -162507252 - MLT1J2 LTR MaLR -120 330 38 255 299 78 66 chr4 21781514 21781848 -162506814 + MLT1K LTR MaLR 209 546 -42 369 0 0 0 chr4 21782506 21782547 -162506115 + (TTA)n Simple_repeat Simple_repeat 2 42 0 712 145 17 0 chr4 21782547 21782664 -162505998 - AluJb SINE Alu -192 120 2 737 275 111 30 chr4 21782678 21782884 -162505778 - MLT1J LTR MaLR -54 457 212 590 259 232 24 chr4 21782884 21783220 -162505442 - MLT1I LTR MaLR -3 406 1 737 275 111 30 chr4 21783220 21783347 -162505315 - MLT1J LTR MaLR -299 212 97 3192 238 55 58 chr4 21783363 21784557 -162504105 - L1MCb LINE L1 -4854 1191 1 304 248 34 34 chr4 21784606 21784723 -162503939 - MLT1J LTR MaLR -394 117 1 212 0 36 0 chr4 21785201 21785229 -162503433 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 574 275 101 52 chr4 21785256 21785601 -162503061 + MLT1J LTR MaLR 117 478 -33 1137 306 33 13 chr4 21785855 21786310 -162502352 - LTR16B LTR ERVL 0 464 1 28 29 0 0 chr4 21786778 21786813 -162501849 + AT_rich Low_complexity Low_complexity 1 35 0 39 50 0 0 chr4 21786846 21786906 -162501756 + AT_rich Low_complexity Low_complexity 1 60 0 1772 193 88 18 chr4 21787479 21787518 -162501144 - MSTA LTR MaLR 0 428 393 2085 128 0 0 chr4 21787518 21787843 -162500819 + AluSx SINE Alu 1 325 0 1772 193 88 18 chr4 21787843 21788202 -162500460 - MSTA LTR MaLR -35 393 1 295 275 132 0 chr4 21788327 21788418 -162500244 - MIR SINE MIR -5 257 155 2333 105 3 13 chr4 21788682 21788995 -162499667 + AluSg SINE Alu 1 310 0 434 279 103 7 chr4 21789006 21789142 -162499520 - MIR SINE MIR -102 160 12 328 323 82 0 chr4 21789152 21789310 -162499352 + MIR SINE MIR 77 247 -15 409 199 87 63 chr4 21789826 21789982 -162498680 + MIR SINE MIR 30 190 -62 237 279 64 109 chr4 21790118 21790378 -162498284 - L2 LINE L2 -167 3105 2857 336 24 0 0 chr4 21790378 21790419 -162498243 + (TG)n Simple_repeat Simple_repeat 2 42 0 237 279 64 109 chr4 21790419 21790441 -162498221 - L2 LINE L2 -415 2857 2836 1344 161 31 85 chr4 21790492 21790809 -162497853 - AluSx SINE Alu 0 312 13 295 327 110 36 chr4 21790866 21791202 -162497460 - L2 LINE L2 -683 2631 2271 193 333 109 14 chr4 21791449 21791587 -162497075 + MIR3 SINE MIR 16 166 -42 2506 63 0 0 chr4 21791590 21791890 -162496772 - AluY SINE Alu -11 300 1 615 274 25 19 chr4 21792592 21792749 -162495913 + MIR3 SINE MIR 30 187 -21 248 295 177 34 chr4 21792836 21792970 -162495692 - MIR SINE MIR -62 146 5 188 316 158 14 chr4 21793645 21793784 -162494878 - MIR SINE MIR -5 257 99 424 284 206 15 chr4 21794296 21794500 -162494162 + MIR SINE MIR 20 262 0 456 216 64 39 chr4 21795582 21795737 -162492925 - L1ME2 LINE L1 -11 6323 5998 22 35 0 0 chr4 21796059 21796088 -162492574 + AT_rich Low_complexity Low_complexity 1 29 0 577 310 73 52 chr4 21796102 21796711 -162491951 + L1M4c LINE L1 1007 3497 -2885 259 369 15 0 chr4 21796720 21796850 -162491812 + LTR16A LTR ERVL 18 149 -301 422 277 78 6 chr4 21796973 21797139 -162491523 + LTR16A LTR ERVL 261 438 -12 579 241 62 20 chr4 21797263 21797458 -162491204 - L1ME1 LINE L1 -5 6161 5959 351 284 31 86 chr4 21797482 21797644 -162491018 + MIR3 SINE MIR 11 163 -45 252 345 14 0 chr4 21797752 21797897 -162490765 - L1MEc LINE L1 -6188 208 62 1493 151 84 57 chr4 21798080 21798379 -162490283 + AluJo SINE Alu 6 312 0 359 328 21 42 chr4 21798436 21798628 -162490034 + L1M4c LINE L1 4516 4703 -1679 833 262 31 0 chr4 21798654 21798845 -162489817 - MIR SINE MIR -19 243 47 214 349 93 0 chr4 21799397 21799483 -162489179 - L3 LINE CR1 -932 645 552 503 249 120 60 chr4 21799634 21799851 -162488811 + MIR SINE MIR 33 262 0 700 168 14 7 chr4 21800010 21800153 -162488509 - L1MB4 LINE L1 -1 6179 6036 1080 261 45 45 chr4 21801743 21802345 -162486317 - L1MEd LINE L1 -4919 1200 599 436 325 102 41 chr4 21802557 21802871 -162485791 - L1MEd LINE L1 -5771 348 16 1073 152 0 0 chr4 21803717 21803882 -162484780 + THE1C LTR MaLR 1 165 -210 1549 70 0 14 chr4 21803976 21804189 -162484473 + THE1C LTR MaLR 166 375 0 312 247 11 0 chr4 21804400 21804493 -162484169 + MLT2D LTR ERVL 1 94 -320 34 24 0 0 chr4 21804495 21804536 -162484126 + AT_rich Low_complexity Low_complexity 1 41 0 1426 190 10 33 chr4 21804538 21804843 -162483819 + MLT2D LTR ERVL 109 406 -8 358 299 112 74 chr4 21804890 21805255 -162483407 + L2 LINE L2 2002 2380 -934 478 226 161 8 chr4 21805281 21805405 -162483257 + MIR SINE MIR 90 232 -30 382 235 214 0 chr4 21805464 21805562 -162483100 + L2 LINE L2 3191 3309 -4 461 312 78 34 chr4 21805577 21805782 -162482880 + L2 LINE L2 2435 2648 -666 193 323 111 0 chr4 21807745 21807844 -162480818 + MIR SINE MIR 37 146 -62 1401 164 95 29 chr4 21807862 21808209 -162480453 + L1MA7 LINE L1 5919 6288 -3 2070 121 13 16 chr4 21809046 21809359 -162479303 + AluSx SINE Alu 1 312 0 2137 127 3 3 chr4 21809441 21809771 -162478891 - THE1B LTR MaLR -33 331 2 5895 109 21 1 chr4 21809771 21810630 -162478032 - THE1B-int LTR MaLR 0 1580 705 2417 110 5 32 chr4 21810651 21811024 -162477638 - THE1B LTR MaLR -1 363 1 22 56 0 0 chr4 21811065 21811101 -162477561 + AT_rich Low_complexity Low_complexity 1 36 0 360 287 42 28 chr4 21811347 21811490 -162477172 + MER5A DNA MER1_type 21 165 -24 180 0 0 0 chr4 21811589 21811609 -162477053 + (CA)n Simple_repeat Simple_repeat 1 20 0 1774 156 20 7 chr4 21811833 21812135 -162476527 - AluJb SINE Alu -2 310 5 180 234 16 47 chr4 21812689 21812753 -162475909 + L2 LINE L2 3179 3240 -73 224 339 106 42 chr4 21812853 21813540 -162475122 + L2 LINE L2 976 1706 -1608 813 128 35 6 chr4 21813801 21813973 -162474689 + Charlie5 DNA MER1_type 2426 2602 -10 1270 196 113 38 chr4 21814824 21815268 -162473394 - Charlie1 DNA MER1_type 0 2761 2285 311 239 68 11 chr4 21815264 21815352 -162473310 - Charlie1 DNA MER1_type -2611 150 58 * 227 215 271 19 chr4 21815571 21815678 -162472984 + MLT1I LTR MaLR 251 384 -25 255 289 0 12 chr4 21815875 21815958 -162472704 + CT-rich Low_complexity Low_complexity 2 83 0 1812 146 10 10 chr4 21816303 21816597 -162472065 - AluJo SINE Alu -13 299 6 228 328 120 88 chr4 21816610 21816951 -162471711 + L2 LINE L2 2920 3271 -1 1110 218 74 11 chr4 21817793 21818077 -162470585 + MER58B DNA MER1_type 40 341 0 292 277 128 0 chr4 21818642 21818736 -162469926 + L2 LINE L2 3150 3255 -17 1012 194 72 14 chr4 21818875 21819097 -162469565 + MER46A DNA MER2_type 1 235 -1 1057 211 0 0 chr4 21820708 21820916 -162467746 + MER3 DNA MER1_type 2 209 0 365 274 203 39 chr4 21820936 21821089 -162467573 + MER5A DNA MER1_type 12 189 0 1205 264 91 31 chr4 21821123 21821506 -162467156 - MLT1I LTR MaLR -3 406 1 308 280 173 13 chr4 21821557 21821707 -162466955 + L2 LINE L2 2591 2764 -550 400 281 42 30 chr4 21821755 21821922 -162466740 + MIR SINE MIR 68 236 -26 288 272 123 26 chr4 21822014 21822128 -162466534 + L2 LINE L2 3133 3257 -15 247 379 45 11 chr4 21822202 21822379 -162466283 + L2 LINE L2 2875 3057 -215 206 183 154 101 chr4 21822576 21822745 -162465917 - L2 LINE L2 -449 2865 2688 272 276 192 13 chr4 21823036 21823192 -162465470 - MLT1J LTR MaLR -49 462 279 384 294 88 7 chr4 21823303 21823439 -162465223 - MLT1J LTR MaLR -309 202 56 297 299 0 0 chr4 21824084 21824151 -162464511 - Charlie8 DNA MER1_type 0 2417 2351 242 209 0 45 chr4 21824820 21824887 -162463775 + MLT1K LTR MaLR 506 569 -19 2120 125 6 10 chr4 21824977 21825288 -162463374 + AluSg SINE Alu 1 310 0 226 369 48 0 chr4 21826797 21826900 -162461762 - L3 LINE CR1 -3 1574 1467 350 356 85 54 chr4 21827309 21828194 -162460468 - L2 LINE L2 -463 2851 1940 405 226 118 80 chr4 21829079 21829366 -162459296 + L1ME3A LINE L1 5873 6170 0 753 183 0 0 chr4 21829375 21829501 -162459161 + FLAM_C SINE Alu 1 126 -17 240 82 49 16 chr4 21829800 21829861 -162458801 + (TTATA)n Simple_repeat Simple_repeat 5 67 0 1021 194 48 16 chr4 21829865 21830117 -162458545 + L1MB7 LINE L1 5906 6165 -19 1060 67 0 0 chr4 21830444 21830579 -162458083 - L1MA4A LINE L1 -532 5771 5637 * 1257 146 28 24 chr4 21830563 21830810 -162457852 + L1MA4A LINE L1 5764 6011 -292 1995 182 75 15 chr4 21830810 21831211 -162457451 - MSTB LTR MaLR 0 426 2 4639 181 29 3 chr4 21831217 21832068 -162456594 - MSTB-int LTR MaLR -5 1646 774 1853 141 73 102 chr4 21832068 21832509 -162456153 + MSTA LTR MaLR 1 428 0 3639 178 68 1 chr4 21832509 21833190 -162455472 + MSTA-int LTR MaLR 1 726 -925 367 203 40 0 chr4 21833190 21833264 -162455398 - MSTB LTR MaLR -349 77 1 1526 142 47 0 chr4 21833267 21833542 -162455120 + L1MA4A LINE L1 6012 6299 -4 435 292 119 37 chr4 21833720 21834088 -162454574 + L1MDa LINE L1 1715 2083 -839 22 0 0 0 chr4 21834211 21834233 -162454429 + AT_rich Low_complexity Low_complexity 1 22 0 619 272 97 58 chr4 21834518 21835320 -162453342 + L1MDa LINE L1 2493 3323 -3217 25611 137 22 14 chr4 21835377 21841689 -162446973 - L1PA8A LINE L1 -3 6443 1 1731 200 0 0 chr4 21841692 21841997 -162446665 - AluJb SINE Alu -7 305 1 1113 280 85 78 chr4 21842050 21843516 -162445146 + L1MDa LINE L1 3468 4922 -1636 845 240 162 3 chr4 21843516 21843812 -162444850 + MER2 DNA MER2_type 1 343 -1 1113 280 85 78 chr4 21843812 21844011 -162444651 + L1MDa LINE L1 4922 5118 -1440 2635 42 7 0 chr4 21844011 21844320 -162444342 - AluY SINE Alu 0 311 1 1113 280 85 78 chr4 21844320 21844607 -162444055 + L1MDa LINE L1 5118 5401 -1157 3796 74 6 8 chr4 21844607 21845118 -162443544 + L1PA10 LINE L1 5657 6166 -2 1113 280 85 78 chr4 21845118 21845187 -162443475 + L1MDa LINE L1 5401 5468 -1090 2084 121 0 10 chr4 21845187 21845527 -162443135 + AluSq SINE Alu 1 313 0 1113 280 85 78 chr4 21845527 21846002 -162442660 + L1MDa LINE L1 5468 5981 -577 467 269 81 49 chr4 21846038 21846261 -162442401 - LTR16A1 LTR ERVL -12 445 216 9472 165 36 44 chr4 21846545 21848892 -162439770 - L1M2 LINE L1 -729 5471 3163 700 54 0 0 chr4 21848897 21848989 -162439673 - L1MA1 LINE L1 0 6302 6211 10207 184 19 5 chr4 21848991 21851065 -162437597 - L1 LINE L1 -790 6775 4672 11476 186 71 10 chr4 21851073 21853248 -162435414 - L1 LINE L1 -5241 2324 16 2862 221 30 9 chr4 21853260 21854039 -162434623 - L1M2 LINE L1 -2861 3173 2379 1036 219 33 111 chr4 21854039 21854400 -162434262 + MER2 DNA MER2_type 2 334 -11 1189 251 69 28 chr4 21854402 21855213 -162433449 - L1M2 LINE L1 -3643 2391 1537 * 2604 262 62 13 chr4 21855207 21856476 -162432186 - L1M2 LINE L1 -4385 1650 331 1632 298 20 7 chr4 21856487 21856927 -162431735 - L1M2 LINE L1 -5506 449 4 279 302 11 37 chr4 21857319 21857427 -162431235 - MIR SINE MIR -73 135 54 2886 193 22 0 chr4 21858702 21859281 -162429381 - L1MC3 LINE L1 0 7785 7194 231 352 23 0 chr4 21859288 21859376 -162429286 - MLT1F1 LTR MaLR -443 124 35 378 169 39 85 chr4 21859376 21859475 -162429187 - L1MC3 LINE L1 -688 7166 7064 198 0 0 0 chr4 21859475 21859497 -162429165 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2138 116 0 0 chr4 21859497 21859782 -162428880 - AluSg SINE Alu -25 285 1 378 169 39 85 chr4 21859782 21859811 -162428851 - L1MC3 LINE L1 -788 7066 7043 1157 217 59 28 chr4 21859811 21860162 -162428500 - MSTD LTR MaLR 0 396 1 7018 203 67 26 chr4 21860171 21861440 -162427222 - L1MC3 LINE L1 -750 5465 5646 2209 110 67 14 chr4 21861440 21861786 -162426876 + THE1B LTR MaLR 1 364 0 7018 203 67 26 chr4 21861786 21862626 -162426036 - L1MC3 LINE L1 -568 5647 4843 1416 251 7 2 chr4 21862632 21863050 -162425612 - L1MC3 LINE L1 -1329 4886 4467 * 2893 257 29 23 chr4 21863045 21864250 -162424412 - L1MC3 LINE L1 -3010 3205 2040 1294 150 5 0 chr4 21864266 21864466 -162424196 + L1PA16 LINE L1 2 202 -6647 11776 165 31 42 chr4 21864466 21866929 -162421733 + L1PA16 LINE L1 734 3157 -3692 468 51 0 0 chr4 21866929 21866988 -162421674 + (CA)n Simple_repeat Simple_repeat 2 60 0 305 130 0 0 chr4 21866989 21867035 -162421627 + L1 LINE L1 4302 4347 -2502 227 232 0 53 chr4 21867105 21867200 -162421462 - L1MC4 LINE L1 -1339 6703 6614 638 211 0 13 chr4 21867203 21867359 -162421303 + (TATATG)n Simple_repeat Simple_repeat 3 156 0 304 267 0 0 chr4 21867363 21867453 -162421209 + L1MC4 LINE L1 6614 6703 -1339 396 200 0 0 chr4 21867453 21867538 -162421124 + (TA)n Simple_repeat Simple_repeat 2 86 0 242 278 0 0 chr4 21867539 21867629 -162421033 + L1MC4 LINE L1 6614 6703 -1339 369 232 0 0 chr4 21867629 21867724 -162420938 + (TA)n Simple_repeat Simple_repeat 2 96 0 312 228 0 22 chr4 21867729 21867821 -162420841 - L1MC4 LINE L1 -1339 6703 6614 360 210 0 0 chr4 21867822 21867903 -162420759 + (TA)n Simple_repeat Simple_repeat 2 82 0 257 228 22 43 chr4 21867903 21867995 -162420667 + L1MC4 LINE L1 6614 6703 -1339 8808 192 20 99 chr4 21868026 21869063 -162419599 + L1PA16 LINE L1 3151 4269 -2600 180 0 0 0 chr4 21869063 21869083 -162419579 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8808 192 20 99 chr4 21869083 21871944 -162416718 + L1PA16 LINE L1 4269 6715 -154 1235 217 54 13 chr4 21871954 21872330 -162416332 - L1MDb LINE L1 -4992 1437 1046 186 289 246 0 chr4 21872369 21872483 -162416179 - MIR3 SINE MIR -31 177 36 1589 197 42 36 chr4 21872643 21872981 -162415681 + MLT1B LTR MaLR 28 370 -20 1862 175 55 40 chr4 21872981 21873403 -162415259 + MSTC LTR MaLR 1 428 0 1589 197 42 36 chr4 21873403 21873425 -162415237 + MLT1B LTR MaLR 370 390 0 917 219 10 26 chr4 21874269 21874461 -162414201 - MER5A DNA MER1_type 0 189 1 228 326 22 11 chr4 21874498 21874587 -162414075 + CT-rich Low_complexity Low_complexity 5 94 0 192 40 0 0 chr4 21874588 21874613 -162414049 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4747 48 7 2 chr4 21874621 21875208 -162413454 - L1PA7 LINE L1 -17 6137 5548 489 318 39 13 chr4 21876125 21876279 -162412383 + MIR3 SINE MIR 42 199 -9 420 270 17 9 chr4 21876799 21876914 -162411748 - MIR SINE MIR -1 261 146 368 249 76 104 chr4 21876925 21877214 -162411448 - L2 LINE L2 -12 3301 3021 278 323 140 27 chr4 21877995 21878181 -162410481 + LTR67 LTR ERVL 98 304 -253 787 193 0 0 chr4 21878394 21878539 -162410123 + AluJb SINE Alu 162 306 -6 209 328 0 0 chr4 21879250 21879317 -162409345 + CT-rich Low_complexity Low_complexity 2 68 0 21 36 0 0 chr4 21879619 21879647 -162409015 + AT_rich Low_complexity Low_complexity 1 28 0 268 294 110 48 chr4 21880279 21880425 -162408237 + MIR3 SINE MIR 3 157 -51 25 31 0 0 chr4 21880611 21880643 -162408019 + AT_rich Low_complexity Low_complexity 1 32 0 1129 263 57 15 chr4 21880821 21881372 -162407290 + L1ME3A LINE L1 5559 6160 -2 1214 299 71 43 chr4 21881690 21882348 -162406314 + L1MEc LINE L1 39 715 -5681 1118 219 29 13 chr4 21882358 21882802 -162405860 + MLT1D LTR MaLR 1 505 0 2784 241 88 26 chr4 21882806 21883901 -162404761 + L1MEc LINE L1 724 1885 -4511 233 210 0 74 chr4 21884496 21884577 -162404085 + L1ME1 LINE L1 5927 6001 -165 664 196 12 37 chr4 21884597 21884760 -162403902 + L1MA10 LINE L1 6169 6327 -7 1482 173 0 64 chr4 21885211 21885536 -162403126 - AluJb SINE Alu 0 311 6 292 297 80 85 chr4 21885720 21885932 -162402730 + MIR SINE MIR 28 238 -24 267 241 159 0 chr4 21886761 21886871 -162401791 + MIR SINE MIR 4 132 -105 535 209 27 91 chr4 21886872 21887059 -162401603 - MLT1D LTR MaLR -310 195 21 352 305 205 35 chr4 21888426 21888685 -162399977 + L2 LINE L2 2472 2774 -540 788 266 54 48 chr4 21888722 21889057 -162399605 - MLT1I LTR MaLR -72 337 1 250 139 0 0 chr4 21889155 21889198 -162399464 + L2 LINE L2 2933 2975 -339 1338 206 4 0 chr4 21889217 21889474 -162399188 + L1MB7 LINE L1 5884 6141 -43 1978 107 76 3 chr4 21889837 21890128 -162398534 - AluSq SINE Alu -1 312 1 368 366 101 21 chr4 21890216 21890681 -162397981 + L2 LINE L2 2807 3308 -5 447 289 81 55 chr4 21890699 21890934 -162397728 + MIR SINE MIR 18 258 -4 370 290 71 19 chr4 21891599 21891779 -162396883 + MIR SINE MIR 18 198 -57 306 252 148 58 chr4 21891893 21892020 -162396642 - MIR SINE MIR -70 192 47 2574 94 14 3 chr4 21892020 21892380 -162396282 + THE1B LTR MaLR 1 364 0 306 252 148 58 chr4 21892380 21892407 -162396255 - MIR SINE MIR -215 47 24 249 237 134 31 chr4 21893309 21893406 -162395256 + MIR SINE MIR 48 154 -108 * 716 226 161 5 chr4 21893399 21893585 -162395077 - MIR SINE MIR 0 262 48 207 351 135 0 chr4 21894257 21894442 -162394220 + MIR SINE MIR 37 246 -16 372 301 98 54 chr4 21894451 21894654 -162394008 + LTR67 LTR ERVL 5 216 -341 1255 111 0 0 chr4 21895103 21895274 -162393388 - AluSc SINE Alu -11 298 128 326 291 108 25 chr4 21895417 21895575 -162393087 - MIR SINE MIR -89 173 3 296 281 219 6 chr4 21896517 21896677 -162391985 + MIR SINE MIR 43 236 -26 750 282 23 14 chr4 21896709 21896925 -162391737 - MIR SINE MIR -32 230 13 526 263 15 0 chr4 21896989 21897122 -162391540 - MIR3 SINE MIR -38 170 36 2336 91 0 25 chr4 21897372 21897690 -162390972 - AluSg SINE Alu 0 310 1 187 333 15 0 chr4 21898308 21898374 -162390288 - L3 LINE CR1 -83 1494 1428 246 318 136 0 chr4 21898408 21898540 -162390122 - MIR SINE MIR -13 249 100 686 256 143 42 chr4 21898852 21898920 -162389742 + MIR SINE MIR 1 61 -201 2572 189 35 21 chr4 21898920 21899387 -162389275 + MLT2B1 LTR ERVL 1 460 -60 252 0 0 0 chr4 21899387 21899415 -162389247 + (TC)n Simple_repeat Simple_repeat 2 29 0 225 0 0 0 chr4 21899414 21899439 -162389223 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 2572 189 35 21 chr4 21899415 21899443 -162389219 + MLT2B1 LTR ERVL 460 486 -34 180 0 0 0 chr4 21899443 21899463 -162389199 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 207 114 0 0 chr4 21899462 21899497 -162389165 + (TA)n Simple_repeat Simple_repeat 1 35 0 2572 189 35 21 chr4 21899463 21899537 -162389125 + MLT2B1 LTR ERVL 486 520 0 686 256 143 42 chr4 21899537 21899706 -162388956 + MIR SINE MIR 61 262 0 570 337 28 31 chr4 21900394 21900649 -162388013 + MIR SINE MIR 7 260 -2 1015 62 0 14 chr4 21900813 21900959 -162387703 + (TCCC)n Simple_repeat Simple_repeat 3 146 0 642 238 5 16 chr4 21901789 21901978 -162386684 - MER53 DNA DNA -2 187 1 186 242 65 16 chr4 21902049 21902111 -162386551 + L2 LINE L2 3200 3264 -8 3485 163 38 10 chr4 21902799 21903481 -162385181 - L1MA8 LINE L1 -22 6269 5569 249 269 135 0 chr4 21903689 21903793 -162384869 - MLT1J LTR MaLR -74 437 320 273 282 0 105 chr4 21903823 21903947 -162384715 + L2 LINE L2 3201 3311 -2 199 286 16 16 chr4 21904504 21904567 -162384095 + L2 LINE L2 3209 3271 -1 1923 143 135 5 chr4 21904970 21905349 -162383313 + MSTA LTR MaLR 1 428 0 728 313 17 4 chr4 21905703 21905936 -162382726 + MIR SINE MIR 13 248 -14 210 229 169 0 chr4 21906190 21906273 -162382389 + L2 LINE L2 3217 3313 0 496 274 185 2 chr4 21907423 21907623 -162381039 - MIR SINE MIR -14 248 11 23 0 0 0 chr4 21908004 21908027 -162380635 + AT_rich Low_complexity Low_complexity 1 23 0 190 337 20 20 chr4 21908652 21908753 -162379909 + L3 LINE CR1 1187 1287 -290 380 314 176 0 chr4 21908849 21909002 -162379660 + L3 LINE CR1 1295 1474 -103 4814 184 53 11 chr4 21910784 21911260 -162377402 - L1MA9 LINE L1 0 6312 5857 198 0 0 0 chr4 21911260 21911282 -162377380 + (TG)n Simple_repeat Simple_repeat 2 23 0 4814 184 53 11 chr4 21911282 21912815 -162375847 - L1MA9 LINE L1 -455 5857 4216 13174 32 1 0 chr4 21912816 21914392 -162374270 - L1PA3 LINE L1 -1269 4877 3300 7534 33 5 0 chr4 21914395 21915668 -162372994 + L1PA3 LINE L1 4879 6155 0 4318 183 64 43 chr4 21915672 21916904 -162371758 - L1MA9 LINE L1 -1926 4220 2963 242 253 98 16 chr4 21916896 21917090 -162371572 - L1M4c LINE L1 -4140 2072 1863 * 345 316 24 42 chr4 21917156 21917324 -162371338 - L1M4c LINE L1 -4161 2050 1532 447 137 0 0 chr4 21917324 21917397 -162371265 - AluS SINE Alu -239 73 1 2939 242 101 19 chr4 21917397 21918011 -162370651 - L1M4c LINE L1 -4567 1574 853 2551 138 33 2 chr4 21918011 21918430 -162370232 + MER57B LTR ERV1 3 434 0 2939 242 101 19 chr4 21918430 21918764 -162369898 - L1M4c LINE L1 -5288 853 548 1549 261 61 0 chr4 21918779 21919174 -162369488 - L1M4c LINE L1 -5680 461 43 225 0 0 0 chr4 21919347 21919372 -162369290 + (T)n Simple_repeat Simple_repeat 1 25 0 248 300 50 33 chr4 21921721 21921841 -162366821 - L2 LINE L2 -217 3055 2934 270 373 113 10 chr4 21922215 21922419 -162366243 + L2 LINE L2 2184 2408 -906 353 296 7 0 chr4 21922690 21922825 -162365837 + MER103 DNA DNA 21 156 -10 28 0 0 0 chr4 21923617 21923645 -162365017 + AT_rich Low_complexity Low_complexity 1 28 0 23615 131 25 78 chr4 21923744 21928781 -162359881 + L1PA8 LINE L1 12 4781 -1365 5937 78 76 3 chr4 21929005 21930314 -162358348 + L1PA8 LINE L1 4798 6167 -5 38700 55 2 7 chr4 21930976 21936936 -162351726 + L1PA4 LINE L1 221 6154 -1 192 217 0 0 chr4 21937116 21937162 -162351500 + CT-rich Low_complexity Low_complexity 3 48 0 225 152 0 0 chr4 21937746 21937792 -162350870 + LTR66 LTR ERVL 394 439 -171 785 196 14 7 chr4 21938013 21938156 -162350506 + AluSc SINE Alu 137 280 -29 234 0 0 0 chr4 21938562 21938588 -162350074 + (CA)n Simple_repeat Simple_repeat 2 27 0 2177 118 0 0 chr4 21938618 21938914 -162349748 + AluSc SINE Alu 1 296 -13 194 208 19 0 chr4 21938975 21939028 -162349634 + (TA)n Simple_repeat Simple_repeat 2 55 0 429 20 0 0 chr4 21939296 21939346 -162349316 + (TG)n Simple_repeat Simple_repeat 1 50 0 201 328 15 15 chr4 21940146 21940213 -162348449 - MIR SINE MIR -105 103 37 2144 62 0 0 chr4 21940355 21940611 -162348051 + AluSc SINE Alu 39 294 -15 190 351 0 13 chr4 21940625 21940702 -162347960 - MIR SINE MIR -65 143 68 218 373 45 8 chr4 21941671 21941805 -162346857 - MIR SINE MIR -65 197 59 33 43 0 0 chr4 21941876 21941923 -162346739 + AT_rich Low_complexity Low_complexity 1 47 0 1757 167 6 35 chr4 21941963 21942274 -162346388 - AluSx SINE Alu -10 302 1 359 356 17 11 chr4 21942944 21943121 -162345541 - HERVL LTR ERVL -1932 3722 3545 497 336 93 28 chr4 21943230 21943810 -162344852 - HERVL LTR ERVL -2988 2776 2159 2348 103 3 0 chr4 21944147 21944459 -162344203 + AluSp SINE Alu 1 313 0 299 345 31 5 chr4 21944513 21944704 -162343958 - HERVL LTR ERVL -4070 926 731 1182 33 0 0 chr4 21944849 21945001 -162343661 - L1PA4 LINE L1 -668 5487 5336 5348 41 1 0 chr4 21945001 21945652 -162343010 + L1PA4 LINE L1 5503 6155 0 230 312 37 28 chr4 21945763 21945872 -162342790 - MER61D LTR ERV1 -42 459 350 * 258 151 55 41 chr4 21945841 21945914 -162342748 - LTR25 LTR ERV1 -128 666 593 748 268 0 6 chr4 21945987 21946166 -162342496 - LTR28 LTR ERV1 -842 178 1 356 287 91 7 chr4 21946199 21946342 -162342320 + MIR SINE MIR 12 166 -96 * 371 273 83 16 chr4 21946336 21946457 -162342205 + L2 LINE L2 3144 3272 0 201 296 0 42 chr4 21946614 21946685 -162341977 + L2 LINE L2 3020 3087 -185 312 319 147 12 chr4 21947612 21947863 -162340799 + MLT1J2 LTR MaLR 45 329 -121 190 341 35 24 chr4 21948087 21948172 -162340490 + L2 LINE L2 3182 3267 -5 876 278 75 84 chr4 21948714 21949312 -162339350 + MLT1E LTR MaLR 1 593 0 402 313 28 34 chr4 21950482 21950661 -162338001 + MIR SINE MIR 3 180 -82 508 227 13 84 chr4 21950698 21950852 -162337810 + MIR SINE MIR 13 155 -107 180 0 0 0 chr4 21950852 21950872 -162337790 + (TAA)n Simple_repeat Simple_repeat 2 21 0 224 332 117 37 chr4 21950894 21951108 -162337554 - L2 LINE L2 0 3313 3083 997 289 28 35 chr4 21951320 21951618 -162337044 - L2 LINE L2 -269 3044 2750 2403 65 0 3 chr4 21951618 21951908 -162336754 - AluY SINE Alu -13 298 10 997 289 28 35 chr4 21951908 21952022 -162336640 - L2 LINE L2 -563 2750 2637 495 247 43 52 chr4 21952055 21952139 -162336523 + MLT1J2 LTR MaLR 67 150 -300 1397 202 49 64 chr4 21952139 21952589 -162336073 - LTR47B LTR ERVL 0 443 1 495 247 43 52 chr4 21952589 21952809 -162335853 + MLT1J2 LTR MaLR 150 450 0 2377 295 110 15 chr4 21952809 21953755 -162334907 - L2 LINE L2 -678 2636 1601 600 85 0 12 chr4 21953823 21953905 -162334757 - 7SLRNA srpRNA srpRNA -10 310 230 189 132 0 0 chr4 21954064 21954102 -162334560 + (CA)n Simple_repeat Simple_repeat 1 38 0 234 215 42 125 chr4 21954300 21954444 -162334218 - L1ME2 LINE L1 -9 6155 6024 296 237 84 5 chr4 21954447 21954577 -162334085 - L1MB7 LINE L1 -226 5938 5803 270 0 0 0 chr4 21955136 21955166 -162333496 + (TG)n Simple_repeat Simple_repeat 2 31 0 323 288 188 0 chr4 21955282 21955452 -162333210 - MIR SINE MIR -3 259 58 191 353 68 45 chr4 21955481 21955702 -162332960 - L2 LINE L2 -230 3042 2817 378 310 18 58 chr4 21955853 21956024 -162332638 + MIR SINE MIR 47 210 -52 203 344 0 0 chr4 21957414 21957475 -162331187 + MIR SINE MIR 199 259 -3 1860 126 95 31 chr4 21957737 21958086 -162330576 - THE1C LTR MaLR 0 375 5 1242 103 49 5 chr4 21958169 21958372 -162330290 + L1PB1 LINE L1 5940 6151 0 23 0 0 0 chr4 21958588 21958611 -162330051 + AT_rich Low_complexity Low_complexity 1 23 0 371 350 56 6 chr4 21958686 21958846 -162329816 + MIR SINE MIR 20 187 -75 278 303 78 35 chr4 21958992 21959134 -162329528 + MIR SINE MIR 115 262 0 249 355 50 16 chr4 21959158 21959279 -162329383 - L2 LINE L2 -5 3267 3143 202 309 54 54 chr4 21959409 21959577 -162329085 + L2 LINE L2 2892 3059 -213 317 300 0 0 chr4 21959655 21959745 -162328917 + MLT1K LTR MaLR 157 246 -342 193 107 0 0 chr4 21960121 21960149 -162328513 + L2 LINE L2 3228 3255 -17 214 308 68 15 chr4 21960277 21960388 -162328274 - MIR SINE MIR -62 146 49 189 353 131 13 chr4 21961528 21961681 -162326981 - MIR SINE MIR -34 228 58 792 286 103 11 chr4 21961830 21962197 -162326465 + MLT1J2 LTR MaLR 50 450 0 26 30 0 0 chr4 21962206 21962239 -162326423 + AT_rich Low_complexity Low_complexity 1 33 0 767 49 82 19 chr4 21962324 21962459 -162326203 + L1PA8A LINE L1 5594 5726 -405 198 291 91 36 chr4 21963149 21963259 -162325403 + L2 LINE L2 3193 3308 -5 303 122 0 0 chr4 21963536 21963585 -162325077 + (CA)n Simple_repeat Simple_repeat 1 49 0 243 0 0 0 chr4 21963688 21963715 -162324947 + (TG)n Simple_repeat Simple_repeat 1 27 0 189 0 0 0 chr4 21963714 21963735 -162324927 + (GA)n Simple_repeat Simple_repeat 1 21 0 * 200 204 74 0 chr4 21964822 21964876 -162323786 - L2 LINE L2 -1 3312 3255 355 375 27 0 chr4 21964882 21964994 -162323668 + L2 LINE L2 2991 3105 -167 394 318 31 57 chr4 21966851 21967043 -162321619 - MIR SINE MIR -56 206 20 301 358 60 33 chr4 21967790 21968089 -162320573 - MARNA DNA Mariner -155 431 125 2184 102 0 7 chr4 21968127 21968420 -162320242 + AluSx SINE Alu 1 291 -21 21 0 0 0 chr4 21968433 21968454 -162320208 + AT_rich Low_complexity Low_complexity 1 21 0 351 0 0 0 chr4 21968468 21968507 -162320155 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 567 273 0 0 chr4 21968686 21968814 -162319848 + MIR SINE MIR 50 177 -85 359 257 66 40 chr4 21968835 21968987 -162319675 - L2 LINE L2 0 3313 3158 1129 266 41 25 chr4 21969032 21969352 -162319310 - LTR40a LTR ERVL -194 325 1 490 239 22 30 chr4 21969354 21969488 -162319174 + MER5A DNA MER1_type 57 189 0 236 98 0 24 chr4 21970733 21970774 -162317888 + (GA)n Simple_repeat Simple_repeat 1 40 0 304 378 13 19 chr4 21972119 21972275 -162316387 - MIR SINE MIR -41 221 67 346 310 128 12 chr4 21973458 21973881 -162314781 + HAL1 LINE L1 1109 1580 -927 1027 229 16 29 chr4 21973947 21974192 -162314470 + AluJo SINE Alu 67 308 -4 270 260 135 30 chr4 21974342 21974838 -162313824 + L1ME LINE L1 2861 3408 -2738 29 0 0 0 chr4 21975002 21975031 -162313631 + AT_rich Low_complexity Low_complexity 1 29 0 233 272 88 16 chr4 21975073 21975198 -162313464 + L1ME LINE L1 3717 3850 -2296 1674 117 12 4 chr4 21975251 21975491 -162313171 + AluSq SINE Alu 16 257 -56 250 45 45 0 chr4 21975496 21975540 -162313122 + (CAAA)n Simple_repeat Simple_repeat 4 49 0 508 238 50 0 chr4 21975651 21975752 -162312910 - MER81 DNA DNA 0 114 9 269 263 57 67 chr4 21976247 21976514 -162312148 + L1ME LINE L1 4577 4836 -1310 304 304 40 94 chr4 21976607 21976979 -162311683 + L1ME LINE L1 4984 5335 -811 382 344 75 24 chr4 21977009 21977425 -162311237 + L1ME LINE L1 5374 5810 -360 2876 210 45 22 chr4 21977453 21977743 -162310919 - MER82 DNA MER2_type 0 653 371 5729 41 26 4 chr4 21977743 21978470 -162310192 - L1PA4 LINE L1 0 6155 5413 2876 210 45 22 chr4 21978470 21978816 -162309846 - MER82 DNA MER2_type -282 371 2 263 143 0 36 chr4 21978817 21978873 -162309789 + (TATATG)n Simple_repeat Simple_repeat 1 54 0 23 0 0 0 chr4 21979181 21979204 -162309458 + AT_rich Low_complexity Low_complexity 1 23 0 1910 160 7 0 chr4 21979319 21979613 -162309049 - AluSx SINE Alu -11 301 6 590 162 73 7 chr4 21979762 21979898 -162308764 + L1MC3 LINE L1 7610 7754 -31 288 305 217 18 chr4 21980076 21980302 -162308360 + L3 LINE CR1 1232 1502 -75 296 319 7 58 chr4 21980429 21980567 -162308095 - L2 LINE L2 0 3313 3183 187 258 72 103 chr4 21981169 21981266 -162307396 - MIR SINE MIR -141 121 28 277 364 7 49 chr4 21981326 21981469 -162307193 - L2 LINE L2 0 3272 3136 1476 209 0 0 chr4 21981527 21981780 -162306882 + AluJo SINE Alu 22 274 -38 960 266 70 3 chr4 21981988 21982315 -162306347 - L1M4 LINE L1 -1128 5018 4670 1050 132 24 0 chr4 21982339 21982506 -162306156 - THE1C LTR MaLR -202 173 3 8129 116 48 15 chr4 21982512 21983743 -162304919 - THE1C-int LTR MaLR -11 1569 299 1769 226 39 20 chr4 21983740 21984231 -162304431 + L1M4 LINE L1 4550 5049 -1097 * 22 0 0 0 chr4 21984383 21984405 -162304257 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr4 21984501 21984521 -162304141 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 225 0 0 0 chr4 21986081 21986106 -162302556 + (T)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chr4 21986207 21986231 -162302431 + AT_rich Low_complexity Low_complexity 1 24 0 361 341 34 23 chr4 21986392 21986568 -162302094 + MIR SINE MIR 50 227 -35 22 35 0 0 chr4 21986590 21986619 -162302043 + AT_rich Low_complexity Low_complexity 1 29 0 203 255 39 0 chr4 21987188 21987239 -162301423 - MIR SINE MIR -54 208 156 226 268 18 0 chr4 21987614 21987670 -162300992 - L2 LINE L2 0 3313 3257 6095 95 36 2 chr4 21987713 21988168 -162300494 - L1PA14 LINE L1 -3 6158 5720 2527 123 0 3 chr4 21988168 21988533 -162300129 - THE1B LTR MaLR 0 364 1 6095 95 36 2 chr4 21988533 21990043 -162298619 - L1PA14 LINE L1 -441 5720 4157 8110 154 18 29 chr4 21990043 21991487 -162297175 + L1PA12 LINE L1 1826 3241 -4343 5901 25 33 1 chr4 21991487 21992067 -162296595 + L1PA4 LINE L1 5411 6020 -135 189 0 0 0 chr4 21992067 21992088 -162296574 + (AGGGGG)n Simple_repeat Simple_repeat 2 22 0 5901 25 33 1 chr4 21992088 21992226 -162296436 + L1PA4 LINE L1 6020 6152 -3 8110 154 18 29 chr4 21992226 21992564 -162296098 + L1PA12 LINE L1 3241 3581 -4003 801 132 85 58 chr4 21992564 21992753 -162295909 + MER3 DNA MER1_type 10 203 -6 21 57 0 0 chr4 21993137 21993172 -162295490 + AT_rich Low_complexity Low_complexity 1 35 0 314 348 66 6 chr4 21993279 21993460 -162295202 + L2 LINE L2 2768 2959 -355 474 248 102 39 chr4 21993521 21993727 -162294935 + L2 LINE L2 3095 3313 0 311 286 82 53 chr4 21994120 21994291 -162294371 + MIR SINE MIR 12 187 -75 8062 176 34 28 chr4 21994746 21997617 -162291045 + L1PA8 LINE L1 11 3826 -3758 32801 40 2 1 chr4 21997620 22002462 -162286200 + L1PA4 LINE L1 1336 6182 0 19079 111 5 2 chr4 22002463 22006214 -162282448 + L1PA8 LINE L1 3818 7596 -14 561 288 41 54 chr4 22006569 22006864 -162281798 + L2 LINE L2 2947 3237 -76 261 0 0 0 chr4 22006912 22006941 -162281721 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 424 304 27 20 chr4 22007879 22008027 -162280635 - MIR SINE MIR -100 162 14 272 288 120 33 chr4 22008972 22009156 -162279506 + MIR SINE MIR 63 262 0 580 282 40 83 chr4 22009232 22009359 -162279303 - L2 LINE L2 0 3313 3182 2248 196 34 16 chr4 22009359 22009855 -162278807 - MLT1D LTR MaLR 0 505 1 580 282 40 83 chr4 22009855 22010053 -162278609 - L2 LINE L2 -131 3182 3002 1232 202 108 38 chr4 22010083 22010424 -162278238 + MLT1A1 LTR MaLR 1 365 0 306 131 0 0 chr4 22011190 22011251 -162277411 - L1PA16 LINE L1 -8 6158 6098 4550 134 3 8 chr4 22011252 22011963 -162276699 - L1PA16 LINE L1 -105 6061 5355 614 264 18 6 chr4 22011982 22012149 -162276513 + MIR SINE MIR 89 257 -5 2305 96 3 6 chr4 22012336 22012648 -162276014 + AluSq SINE Alu 3 313 0 24 32 0 0 chr4 22012894 22012925 -162275737 + AT_rich Low_complexity Low_complexity 1 31 0 513 279 81 25 chr4 22013402 22013725 -162274937 + L1M4 LINE L1 2231 2571 -3575 21 0 0 0 chr4 22013725 22013746 -162274916 + AT_rich Low_complexity Low_complexity 1 21 0 211 409 0 11 chr4 22013797 22013885 -162274777 - L3 LINE CR1 -102 1475 1389 215 338 0 0 chr4 22013949 22014023 -162274639 - MIR SINE MIR -105 103 30 402 354 51 29 chr4 22015445 22015761 -162272901 - L2 LINE L2 -2571 743 421 290 333 38 38 chr4 22016284 22016416 -162272246 + MIR3 SINE MIR 2 133 -75 213 282 24 89 chr4 22016767 22016891 -162271771 + MIR SINE MIR 92 207 -55 251 275 9 0 chr4 22018141 22018250 -162270412 + CT-rich Low_complexity Low_complexity 2 111 0 2238 175 60 38 chr4 22018642 22019145 -162269517 - MER67D LTR ERV1 0 514 1 888 285 50 42 chr4 22019209 22019570 -162269092 - MLT1K LTR MaLR -44 544 181 3198 34 3 0 chr4 22020284 22020666 -162267996 - L1PA3 LINE L1 -3 6152 5770 239 283 20 71 chr4 22021040 22021139 -162267523 + MIR SINE MIR 54 147 -61 282 29 0 0 chr4 22021812 22021847 -162266815 + (TG)n Simple_repeat Simple_repeat 2 36 0 1849 142 26 29 chr4 22021881 22022192 -162266470 + AluSx SINE Alu 3 312 0 353 312 101 17 chr4 22022246 22022486 -162266176 - MLT1J2 LTR MaLR -170 276 1 536 309 39 11 chr4 22023743 22023924 -162264738 - MIR SINE MIR -6 256 71 838 288 75 69 chr4 22024468 22025334 -162263328 + L1MEc LINE L1 311 1181 -5215 271 143 0 36 chr4 22025402 22025458 -162263204 + L1MC1 LINE L1 6280 6333 0 2040 229 65 22 chr4 22025459 22026137 -162262525 + L1MEc LINE L1 2343 3049 -3166 1182 231 61 26 chr4 22026139 22026481 -162262181 - MLT1A2 LTR MaLR -2 372 19 3883 190 14 1 chr4 22026544 22027275 -162261387 - L1MB3 LINE L1 -124 6059 5320 443 243 32 11 chr4 22027271 22027460 -162261202 + L1MEc LINE L1 3072 3264 -2951 * 218 363 0 0 chr4 22027529 22027609 -162261053 + L2 LINE L2 3230 3309 -4 216 324 78 29 chr4 22029789 22029891 -162258771 - MIR SINE MIR -70 138 32 240 309 167 29 chr4 22030169 22030372 -162258290 - MIR SINE MIR -22 240 6 322 318 11 0 chr4 22030396 22030484 -162258178 - MIR SINE MIR -116 146 58 288 263 53 84 chr4 22032039 22032229 -162256433 - L1ME LINE L1 -336 5785 5602 258 312 56 91 chr4 22032463 22032624 -162256038 - MIR SINE MIR -20 242 90 906 172 60 51 chr4 22032624 22032839 -162255823 - MER20 DNA MER1_type 0 219 3 258 312 56 91 chr4 22032839 22032908 -162255754 - MIR SINE MIR -172 90 20 493 263 26 26 chr4 22033213 22033365 -162255297 + MIR SINE MIR 9 160 -102 1694 175 38 56 chr4 22033365 22033760 -162254902 - MLT1B LTR MaLR -2 388 1 2009 73 0 0 chr4 22033806 22034065 -162254597 - L1PA12 LINE L1 -2 6166 5908 1277 60 18 0 chr4 22034065 22034232 -162254430 + L1P4 LINE L1 5424 5593 -575 1574 136 4 4 chr4 22034320 22034577 -162254085 - L1PA16 LINE L1 -9 6157 5901 230 298 0 0 chr4 22034932 22035016 -162253646 + (TA)n Simple_repeat Simple_repeat 2 85 0 410 285 111 31 chr4 22035106 22035457 -162253205 - L1ME4a LINE L1 -213 5908 5530 1694 166 3 30 chr4 22035902 22036203 -162252459 + AluJb SINE Alu 12 304 -8 377 284 146 44 chr4 22036437 22036890 -162251772 - L1ME LINE L1 -367 5754 5255 250 255 94 38 chr4 22036925 22037031 -162251631 - L2 LINE L2 -589 2725 2614 25 65 0 0 chr4 22037142 22037188 -162251474 + AT_rich Low_complexity Low_complexity 1 46 0 1332 273 69 34 chr4 22037383 22037530 -162251132 - MLT1J LTR MaLR 0 511 371 2177 129 0 3 chr4 22037530 22037833 -162250829 - AluSq SINE Alu -11 302 1 1332 273 69 34 chr4 22037833 22038179 -162250483 - MLT1J LTR MaLR -140 371 1 254 313 12 0 chr4 22038333 22038413 -162250249 + MIR3 SINE MIR 114 194 -14 416 165 13 0 chr4 22039338 22039417 -162249245 - MER116 DNA Mariner 0 80 1 363 78 0 0 chr4 22039552 22039603 -162249059 + (TA)n Simple_repeat Simple_repeat 2 52 0 26 50 0 0 chr4 22039642 22039682 -162248980 + AT_rich Low_complexity Low_complexity 1 40 0 320 0 25 0 chr4 22040083 22040123 -162248539 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 237 312 70 21 chr4 22041318 22041418 -162247244 + MIR SINE MIR 3 107 -101 2425 64 0 0 chr4 22041604 22041901 -162246761 - AluY SINE Alu -14 297 1 248 394 43 22 chr4 22041996 22042227 -162246435 - L2 LINE L2 -89 3183 2948 235 204 56 0 chr4 22042402 22042456 -162246206 - MER58 DNA MER1_type -2140 280 224 448 172 11 23 chr4 22042518 22042605 -162246057 + MIR SINE MIR 69 154 -108 1821 268 82 30 chr4 22043242 22044105 -162244557 + L1ME1 LINE L1 36 943 -5453 4624 244 75 39 chr4 22044111 22045477 -162243185 + L1ME1 LINE L1 989 2305 -3910 469 139 13 0 chr4 22045477 22045556 -162243106 + MADE1 DNA Mariner 1 80 0 4624 244 75 39 chr4 22045556 22047249 -162241413 + L1ME1 LINE L1 2305 4142 -2073 2484 119 17 6 chr4 22047249 22047609 -162241053 - THE1B LTR MaLR 0 364 1 4624 244 75 39 chr4 22047609 22047768 -162240894 + L1ME1 LINE L1 4142 4294 -1921 2436 208 127 51 chr4 22047764 22047782 -162240880 + L1ME1 LINE L1 5399 5414 -821 * 2089 160 20 3 chr4 22047782 22048138 -162240524 + MLT1A1 LTR MaLR 3 364 -1 2436 208 127 51 chr4 22048138 22048889 -162239773 + L1ME1 LINE L1 5414 6227 -8 230 274 147 11 chr4 22050465 22050560 -162238102 - L2 LINE L2 -2 3311 3204 444 343 11 17 chr4 22051478 22051659 -162237003 - MIR SINE MIR -34 228 49 616 289 83 4 chr4 22051809 22052051 -162236611 + MIR SINE MIR 2 262 0 24 32 0 0 chr4 22052294 22052325 -162236337 + AT_rich Low_complexity Low_complexity 1 31 0 2254 98 0 0 chr4 22052380 22052689 -162235973 - AluSq SINE Alu 0 309 1 388 306 20 48 chr4 22052864 22053011 -162235651 - MIR3 SINE MIR -10 198 56 310 278 0 0 chr4 22053211 22053283 -162235379 - MIR SINE MIR 0 262 191 1891 190 35 47 chr4 22053605 22054069 -162234593 + LTR55 LTR ERV 1 458 -90 3132 171 23 18 chr4 22055818 22056419 -162232243 + MER6A DNA MER2_type 1 604 -1 422 307 58 54 chr4 22056478 22056683 -162231979 + MIR SINE MIR 21 228 -34 441 284 139 29 chr4 22056962 22057170 -162231492 - MIR SINE MIR -18 244 14 339 338 15 15 chr4 22057566 22057702 -162230960 - MIR3 SINE MIR -4 204 69 474 233 94 19 chr4 22058596 22058755 -162229907 + MLT1J2 LTR MaLR 5 175 -275 265 266 38 0 chr4 22058904 22058983 -162229679 + MLT1I LTR MaLR 305 386 -23 851 272 16 20 chr4 22059615 22059865 -162228797 - MIR SINE MIR -13 249 1 500 272 94 19 chr4 22059897 22060110 -162228552 - MIR SINE MIR -3 259 31 187 315 9 117 chr4 22060270 22060381 -162228281 + L2 LINE L2 2944 3042 -230 215 267 33 0 chr4 22061139 22061199 -162227463 + CT-rich Low_complexity Low_complexity 4 65 0 2203 180 64 104 chr4 22061806 22062479 -162226183 - MLT1E1 LTR MaLR 0 654 9 1305 262 69 10 chr4 22062756 22063426 -162225236 - L2 LINE L2 0 3313 2598 730 251 80 42 chr4 22063450 22063836 -162224826 - MER65A LTR ERV1 -44 401 1 828 294 83 65 chr4 22063837 22064296 -162224366 - MLT1E2 LTR MaLR -156 470 4 255 152 0 0 chr4 22064302 22064348 -162224314 + (CA)n Simple_repeat Simple_repeat 1 46 0 2243 208 64 17 chr4 22064440 22064974 -162223688 - MER21B LTR ERV1 -58 805 247 585 283 35 33 chr4 22065714 22066026 -162222636 - MLT1H LTR MaLR -195 354 8 308 321 152 24 chr4 22066872 22067105 -162221557 - MIR SINE MIR -6 256 3 526 253 59 59 chr4 22067745 22067966 -162220696 + MIR SINE MIR 2 222 -40 243 267 33 0 chr4 22067993 22068053 -162220609 - MER91 DNA MER1_type -1 139 78 320 292 124 7 chr4 22069107 22069244 -162219418 - MIR SINE MIR -26 236 84 707 228 7 0 chr4 22069411 22069560 -162219102 - MER58A DNA MER1_type -32 192 43 196 425 8 24 chr4 22070483 22070610 -162218052 - L2 LINE L2 -679 2635 2511 1499 146 101 51 chr4 22071026 22071382 -162217280 + THE1C LTR MaLR 2 375 0 267 226 68 122 chr4 22071410 22071706 -162216956 + MLT1H LTR MaLR 238 517 -32 192 273 36 0 chr4 22072081 22072136 -162216526 + L2 LINE L2 3221 3277 -36 183 129 0 0 chr4 22072837 22072868 -162215794 + (TCCC)n Simple_repeat Simple_repeat 2 32 0 630 141 13 32 chr4 22072877 22073033 -162215629 + CT-rich Low_complexity Low_complexity 3 155 0 980 107 6 17 chr4 22073033 22073211 -162215451 + (TTTC)n Simple_repeat Simple_repeat 1 176 0 1379 155 12 8 chr4 22073243 22073488 -162215174 + L1PA16 LINE L1 5905 6150 -16 541 300 30 35 chr4 22073632 22073832 -162214830 - MIR SINE MIR -42 220 22 304 245 32 53 chr4 22073932 22074026 -162214636 - MLT1H LTR MaLR -17 578 487 414 290 71 32 chr4 22074075 22074327 -162214335 - MLT1H LTR MaLR -227 322 61 2065 118 3 22 chr4 22074568 22074883 -162213779 + AluSc SINE Alu 1 309 0 192 158 0 0 chr4 22074965 22075003 -162213659 + (TTA)n Simple_repeat Simple_repeat 1 38 0 2335 97 0 0 chr4 22075788 22076087 -162212575 + AluSg SINE Alu 1 299 -11 270 263 53 18 chr4 22076181 22076295 -162212367 + MIR SINE MIR 89 206 -56 543 254 360 25 chr4 22076521 22076993 -162211669 + L2 LINE L2 1886 2515 -799 473 224 26 0 chr4 22077039 22077155 -162211507 + MLT1H LTR MaLR 43 161 -388 1981 188 10 3 chr4 22077188 22077571 -162211091 + MER89 LTR ERV1 172 557 -2 278 240 0 164 chr4 22077579 22077750 -162210912 + MLT1H LTR MaLR 165 307 -242 828 168 27 0 chr4 22078202 22078351 -162210311 - Tigger3b DNA MER2_type 0 1241 1089 4140 118 43 59 chr4 22078353 22079775 -162208887 - pTR5 LTR ERV1 0 2438 750 3978 156 181 2 chr4 22079775 22080700 -162207962 - Tigger3b DNA MER2_type -141 1090 1 189 290 87 0 chr4 22081511 22081580 -162207082 + MIR SINE MIR 78 152 -56 226 309 52 41 chr4 22081704 22081801 -162206861 - L2 LINE L2 -3 3269 3172 262 346 10 10 chr4 22081829 22081930 -162206732 - MIR SINE MIR -161 101 1 227 269 0 19 chr4 22082490 22082542 -162206120 + L2 LINE L2 3210 3260 -12 191 255 0 20 chr4 22082715 22082766 -162205896 - MIR SINE MIR -111 151 102 312 309 89 18 chr4 22083284 22083452 -162205210 - MIR SINE MIR -32 230 51 213 333 72 69 chr4 22084257 22084605 -162204057 + L2 LINE L2 2396 2744 -570 650 211 8 8 chr4 22084641 22084774 -162203888 + FLAM_C SINE Alu 1 133 0 5298 157 17 11 chr4 22084822 22086095 -162202567 + L1PA16 LINE L1 4885 6166 0 452 399 47 39 chr4 22086146 22086552 -162202110 + L2 LINE L2 2863 3271 -1 283 327 96 19 chr4 22086646 22086802 -162201860 + L2 LINE L2 2926 3093 -179 4081 73 68 9 chr4 22086880 22087456 -162201206 + L1PA7 LINE L1 5544 6153 -1 271 259 114 30 chr4 22087593 22087724 -162200938 + L2 LINE L2 3168 3309 -4 1638 114 9 0 chr4 22088250 22088469 -162200193 - AluSg/x SINE Alu -17 293 73 493 296 122 14 chr4 22088526 22088739 -162199923 + MIR SINE MIR 2 237 -25 201 241 0 56 chr4 22088711 22088765 -162199897 + L2 LINE L2 3255 3305 -8 * 39 68 0 0 chr4 22089249 22089323 -162199339 + AT_rich Low_complexity Low_complexity 1 74 0 1600 160 26 3 chr4 22089566 22089878 -162198784 + MER33 DNA MER1_type 2 320 -4 206 353 0 35 chr4 22089907 22089992 -162198670 - L2 LINE L2 -13 3259 3178 222 358 63 34 chr4 22090055 22090204 -162198458 + MIR SINE MIR 2 153 -65 777 271 33 9 chr4 22090480 22090694 -162197968 - MIR SINE MIR -41 221 3 520 330 89 44 chr4 22090799 22091160 -162197502 - L2 LINE L2 -438 2876 2500 30 0 0 0 chr4 22091885 22091915 -162196747 + AT_rich Low_complexity Low_complexity 1 30 0 2331 99 0 10 chr4 22092062 22092365 -162196297 - AluSq SINE Alu -13 300 1 347 307 101 11 chr4 22092459 22092638 -162196024 + L3 LINE CR1 670 864 -713 734 259 23 0 chr4 22093735 22093909 -162194753 - MER45A DNA AcHobo 0 178 1 1989 125 71 48 chr4 22094323 22094675 -162193987 + THE1B LTR MaLR 1 360 -4 353 259 43 58 chr4 22094683 22094822 -162193840 + MIR SINE MIR 60 196 -66 345 320 63 46 chr4 22095423 22095598 -162193064 + L2 LINE L2 2214 2391 -923 191 328 45 15 chr4 22095993 22096060 -162192602 - L2 LINE L2 -183 3089 3021 623 289 146 36 chr4 22096346 22096702 -162191960 - L2 LINE L2 0 3313 2919 303 383 35 0 chr4 22096754 22096895 -162191767 - L2 LINE L2 -589 2725 2580 201 74 0 0 chr4 22098111 22098138 -162190524 + (CA)n Simple_repeat Simple_repeat 2 28 0 * 459 0 0 0 chr4 22098137 22098188 -162190474 + (GA)n Simple_repeat Simple_repeat 2 52 0 1732 163 11 22 chr4 22098189 22098465 -162190197 - AluJo SINE Alu -37 275 3 1199 268 71 39 chr4 22098961 22099108 -162189554 - MLT1J LTR MaLR 0 511 370 2212 129 0 3 chr4 22099108 22099411 -162189251 - AluSq SINE Alu -11 302 1 1199 268 71 39 chr4 22099411 22099730 -162188932 - MLT1J LTR MaLR -141 370 30 799 247 31 0 chr4 22099880 22100103 -162188559 - L1ME LINE L1 -393 5771 5542 570 317 75 24 chr4 22100156 22100944 -162187718 - L1ME LINE L1 -1786 4360 3533 258 105 0 0 chr4 22100948 22100986 -162187676 + (TG)n Simple_repeat Simple_repeat 2 39 0 204 67 22 67 chr4 22101100 22101145 -162187517 + (TG)n Simple_repeat Simple_repeat 1 43 0 1392 199 44 39 chr4 22101654 22101676 -162186986 - MLT1B LTR MaLR 0 390 370 1847 175 55 40 chr4 22101676 22102098 -162186564 - MSTC LTR MaLR 0 428 1 1392 199 44 39 chr4 22102098 22102437 -162186225 - MLT1B LTR MaLR -20 370 27 21 36 0 0 chr4 22103366 22103394 -162185268 + AT_rich Low_complexity Low_complexity 1 28 0 209 328 0 0 chr4 22103696 22103763 -162184899 + GA-rich Low_complexity Low_complexity 2 68 0 5829 182 15 27 chr4 22104386 22105752 -162182910 - L1P3 LINE L1 -4056 2405 1012 573 267 24 6 chr4 22105745 22105910 -162182752 + L1P3 LINE L1 564 731 -5730 * 198 0 0 0 chr4 22156556 22156578 -162132084 + (TTG)n Simple_repeat Simple_repeat 3 24 0 25 99 0 0 chr4 22157679 22157760 -162130902 + AT_rich Low_complexity Low_complexity 1 81 0 289 263 25 75 chr4 22158087 22158247 -162130415 + MER103 DNA DNA 2 153 -13 28 48 0 0 chr4 22158323 22158365 -162130297 + AT_rich Low_complexity Low_complexity 1 42 0 2304 95 7 3 chr4 22158480 22158786 -162129876 + AluSx SINE Alu 6 312 0 610 261 61 87 chr4 22159106 22159417 -162129245 + MLT1C LTR MaLR 1 303 -164 2999 90 51 5 chr4 22159420 22159853 -162128809 - MLT2A2 LTR ERVL 0 453 1 8530 85 19 0 chr4 22159854 22160270 -162128392 - HERVL-A2 LTR ERVL -1 5653 5246 212 0 36 0 chr4 22160270 22160298 -162128364 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 8530 85 19 0 chr4 22160298 22161024 -162127638 - HERVL-A2 LTR ERVL -408 5246 4489 2582 158 25 27 chr4 22161025 22161511 -162127151 + MSTA-int LTR MaLR 1167 1651 0 2366 133 66 15 chr4 22161511 22161918 -162126744 + MSTA LTR MaLR 1 428 0 180 0 0 0 chr4 22162354 22162374 -162126288 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 306 0 0 0 chr4 22162415 22162449 -162126213 + (TG)n Simple_repeat Simple_repeat 2 35 0 295 298 50 41 chr4 22162754 22162875 -162125787 + MLT1J LTR MaLR 326 447 -64 208 245 0 20 chr4 22163154 22163203 -162125459 - MIR SINE MIR -118 144 97 185 263 0 70 chr4 22163650 22163707 -162124955 + L2 LINE L2 3205 3257 -15 228 297 16 0 chr4 22163815 22163879 -162124783 - MIR SINE MIR -151 111 47 189 225 25 0 chr4 22163961 22164001 -162124661 - L2 LINE L2 -21 3292 3252 24 0 0 0 chr4 22164269 22164293 -162124369 + AT_rich Low_complexity Low_complexity 1 24 0 2187 104 0 10 chr4 22164337 22164626 -162124036 + AluSg SINE Alu 1 286 -24 25 0 0 0 chr4 22164626 22164651 -162124011 + AT_rich Low_complexity Low_complexity 1 25 0 194 277 0 0 chr4 22165161 22165208 -162123454 - L2 LINE L2 -17 3255 3209 265 250 297 16 chr4 22165261 22165389 -162123273 + MIR SINE MIR 73 236 -26 353 330 63 10 chr4 22165486 22165692 -162122970 + MIR SINE MIR 46 262 0 27 0 0 0 chr4 22165760 22165787 -162122875 + AT_rich Low_complexity Low_complexity 1 27 0 248 368 105 0 chr4 22166207 22166321 -162122341 - L2 LINE L2 -11 3261 3136 206 267 0 0 chr4 22166780 22166825 -162121837 + L2 LINE L2 3223 3267 -5 2040 132 30 0 chr4 22167173 22167468 -162121194 - AluSx SINE Alu -8 304 1 199 350 58 19 chr4 22167476 22167579 -162121083 - MIR SINE MIR -64 144 38 673 305 156 19 chr4 22167613 22168042 -162120620 + L2 LINE L2 613 1100 -2214 323 308 58 8 chr4 22168148 22168268 -162120394 - MIR SINE MIR -97 165 40 339 113 0 0 chr4 22168855 22168908 -162119754 + (T)n Simple_repeat Simple_repeat 1 53 0 263 309 0 0 chr4 22169557 22169625 -162119037 - L2 LINE L2 -14 3299 3232 * 378 169 101 0 chr4 22169623 22169712 -162118950 + MLT2C2 LTR ERVL 46 143 -321 195 42 0 0 chr4 22172201 22172225 -162116437 + (GAAAA)n Simple_repeat Simple_repeat 4 27 0 538 304 84 21 chr4 22173175 22173412 -162115250 + MIR SINE MIR 7 258 -4 300 309 66 20 chr4 22173422 22173574 -162115088 - MIR SINE MIR -74 188 30 202 347 0 0 chr4 22173709 22173781 -162114881 + T-rich Low_complexity Low_complexity 3 74 0 * 203 200 18 36 chr4 22173730 22173785 -162114877 + CT-rich Low_complexity Low_complexity 2 55 0 22 88 0 0 chr4 22173898 22173955 -162114707 + AT_rich Low_complexity Low_complexity 1 57 0 1237 317 88 25 chr4 22174737 22175444 -162113218 + L2 LINE L2 2153 2903 -411 400 171 0 0 chr4 22175568 22175638 -162113024 - AluSq SINE Alu -18 295 226 1165 160 82 10 chr4 22175743 22175949 -162112713 - AluSq SINE Alu -92 221 1 219 233 0 0 chr4 22176273 22176316 -162112346 + GA-rich Low_complexity Low_complexity 4 46 0 952 206 57 14 chr4 22176419 22176628 -162112034 + MER20 DNA MER1_type 2 219 0 250 59 78 0 chr4 22176843 22176894 -162111768 + T-rich Low_complexity Low_complexity 1 55 0 21 36 0 0 chr4 22176988 22177016 -162111646 + AT_rich Low_complexity Low_complexity 1 28 0 254 287 46 35 chr4 22177342 22177429 -162111233 - L2 LINE L2 -4 3309 3222 705 257 33 0 chr4 22178025 22178208 -162110454 + MER5A DNA MER1_type 1 189 0 285 200 0 100 chr4 22178401 22178481 -162110181 + MER5A DNA MER1_type 35 106 -83 936 286 69 13 chr4 22178557 22179019 -162109643 + MER113 DNA MER1_type? 1 488 -33 401 287 213 7 chr4 22179075 22179225 -162109437 - MER5A DNA MER1_type 0 189 9 1885 127 53 20 chr4 22179491 22179790 -162108872 + AluSx SINE Alu 3 311 -1 608 277 98 13 chr4 22180824 22181059 -162107603 - MIR SINE MIR -5 257 3 315 345 44 34 chr4 22181353 22181559 -162107103 + MIR SINE MIR 3 210 -52 398 133 193 24 chr4 22181677 22181760 -162106902 - THE1B LTR MaLR -99 265 169 * 409 107 0 0 chr4 22181759 22181815 -162106847 - THE1B LTR MaLR -308 56 1 241 300 117 39 chr4 22181955 22182135 -162106527 + L3 LINE CR1 1376 1569 -8 1727 133 93 4 chr4 22182211 22182481 -162106181 + AluSc SINE Alu 1 294 -15 738 246 125 37 chr4 22182501 22182773 -162105889 - L2 LINE L2 -1 3312 3017 2100 296 64 58 chr4 22182795 22183520 -162105142 - L2 LINE L2 -1240 2074 1355 2592 138 2 0 chr4 22183520 22183920 -162104742 + MER57A LTR ERV1 2 402 -1 2100 296 64 58 chr4 22183920 22184001 -162104661 - L2 LINE L2 -1959 1355 1276 816 216 66 33 chr4 22184001 22184214 -162104448 + MER58A DNA MER1_type 5 224 0 2100 296 64 58 chr4 22184214 22184302 -162104360 - L2 LINE L2 -2038 1276 1190 303 28 0 0 chr4 22184302 22184338 -162104324 + (TG)n Simple_repeat Simple_repeat 1 36 0 2100 296 64 58 chr4 22184338 22184723 -162103939 - L2 LINE L2 -2124 1190 785 28 0 0 0 chr4 22185655 22185683 -162102979 + AT_rich Low_complexity Low_complexity 1 28 0 363 169 0 0 chr4 22185686 22185757 -162102905 + (CA)n Simple_repeat Simple_repeat 2 72 0 249 254 33 160 chr4 22185789 22185928 -162102734 - L2 LINE L2 -90 3182 3070 966 207 42 42 chr4 22185928 22186145 -162102517 - MER20 DNA MER1_type 0 219 3 249 254 33 160 chr4 22186145 22186186 -162102476 - L2 LINE L2 -202 3070 3025 267 312 55 28 chr4 22186427 22186536 -162102126 + MER5B DNA MER1_type 26 137 -41 511 248 215 0 chr4 22186570 22186719 -162101943 + MER5A DNA MER1_type 9 189 0 297 308 69 8 chr4 22187189 22187319 -162101343 - MIR SINE MIR -112 150 13 733 222 98 35 chr4 22187835 22187871 -162100791 - MLT2B1 LTR ERVL -8 512 480 602 49 12 0 chr4 22187871 22187953 -162100709 + (TAGA)n Simple_repeat Simple_repeat 3 85 0 733 222 98 35 chr4 22187953 22188119 -162100543 - MLT2B1 LTR ERVL -40 480 297 2620 233 82 105 chr4 22188120 22189242 -162099420 + MER52A LTR ERV1 660 1755 0 665 277 109 5 chr4 22189873 22190093 -162098569 + MIR SINE MIR 6 248 -14 397 400 5 5 chr4 22190325 22190510 -162098152 + MIR3 SINE MIR 20 204 -4 263 324 109 61 chr4 22190723 22191100 -162097562 - L2 LINE L2 -85 3228 2834 843 256 18 9 chr4 22191190 22191417 -162097245 - MIR SINE MIR -30 232 4 234 0 0 0 chr4 22191601 22191627 -162097035 + (A)n Simple_repeat Simple_repeat 1 26 0 25 0 0 0 chr4 22191674 22191699 -162096963 + AT_rich Low_complexity Low_complexity 1 25 0 356 316 18 96 chr4 22192400 22192672 -162095990 - LTR67 LTR ERVL -295 262 12 405 0 0 0 chr4 22192907 22192952 -162095710 + (CA)n Simple_repeat Simple_repeat 2 46 0 1055 214 88 13 chr4 22192968 22193286 -162095376 - MER2 DNA MER2_type 0 344 3 88 46 0 0 chr4 22194947 22195077 -162093585 + AT_rich Low_complexity Low_complexity 1 130 0 12967 227 30 47 chr4 22195095 22197094 -162091568 - L1PA16 LINE L1 -5 6812 4782 637 37 0 0 chr4 22197094 22197175 -162091487 - L1PA7 LINE L1 -2 6152 6072 12967 227 30 47 chr4 22197175 22200720 -162087942 - L1PA16 LINE L1 -2035 4782 1341 1842 315 37 60 chr4 22200743 22201634 -162087028 - L1PA16 LINE L1 -5916 871 1 687 183 53 8 chr4 22201859 22201990 -162086672 + MLT1A1 LTR MaLR 1 137 -228 1859 211 29 93 chr4 22201991 22202541 -162086121 + MLT2B2 LTR ERVL 1 515 0 664 238 17 28 chr4 22202541 22202721 -162085941 + MLT1A1 LTR MaLR 134 311 -54 378 317 120 0 chr4 22203291 22203433 -162085229 - L2 LINE L2 -8 3264 3106 183 311 122 14 chr4 22203690 22203764 -162084898 - L2 LINE L2 -12 3260 3179 25 51 0 0 chr4 22203856 22203895 -162084767 + AT_rich Low_complexity Low_complexity 1 39 0 547 202 65 8 chr4 22203913 22204037 -162084625 + MLT1A1 LTR MaLR 6 136 -229 5459 221 31 45 chr4 22204380 22204797 -162083865 + L1PB4 LINE L1 3986 4407 -1749 221 0 35 0 chr4 22204797 22204826 -162083836 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 5459 221 31 45 chr4 22204826 22206613 -162082049 + L1PB4 LINE L1 4407 6153 -3 315 364 8 8 chr4 22207184 22207302 -162081360 + MIR SINE MIR 16 133 -129 24 53 0 0 chr4 22207428 22207466 -162081196 + AT_rich Low_complexity Low_complexity 1 38 0 597 272 53 6 chr4 22207700 22207869 -162080793 - MER5A DNA MER1_type -11 178 2 251 170 21 0 chr4 22207882 22207929 -162080733 + MER5B DNA MER1_type 7 54 -124 2003 110 3 7 chr4 22208029 22208311 -162080351 - AluY SINE Alu -30 281 1 569 278 120 29 chr4 22208870 22209079 -162079583 - MIR SINE MIR -3 259 32 23 0 0 0 chr4 22211034 22211057 -162077605 + AT_rich Low_complexity Low_complexity 1 23 0 470 209 8 0 chr4 22211681 22211696 -162076966 + (TA)n Simple_repeat Simple_repeat 2 15 -116 314 138 0 0 chr4 22211696 22211761 -162076901 - L1PB3 LINE L1 -1 6153 6089 470 209 8 0 chr4 22211761 22211803 -162076859 + (TA)n Simple_repeat Simple_repeat 15 55 -76 4576 128 19 26 chr4 22211803 22212594 -162076068 - LTR1 LTR ERV1 0 785 1 470 209 8 0 chr4 22212594 22212664 -162075998 + (TA)n Simple_repeat Simple_repeat 55 131 0 3721 148 42 2 chr4 22212749 22213364 -162075298 - MER39B LTR ERV1 0 653 14 1034 208 105 68 chr4 22213482 22213910 -162074752 - MER39 LTR ERV1 -3 704 261 561 164 78 8 chr4 22214071 22214199 -162074463 - LTR48 LTR ERV1 -42 745 609 1480 203 121 34 chr4 22214226 22214665 -162073997 - LTR48 LTR ERV1 -310 477 1 548 146 0 24 chr4 22215574 22215697 -162072965 + (GGAA)n Simple_repeat Simple_repeat 1 120 0 486 333 45 5 chr4 22215847 22216048 -162072614 + MIR SINE MIR 47 255 -7 530 264 63 55 chr4 22216163 22216546 -162072116 - Charlie2 DNA MER1_type -249 2613 2228 480 315 113 0 chr4 22216584 22216806 -162071856 - Charlie2 DNA MER1_type -2467 315 69 5725 60 10 7 chr4 22217045 22218185 -162070477 - L1PA7 LINE L1 0 6154 4995 1455 102 0 0 chr4 22218285 22218491 -162070171 - L1PA7 LINE L1 -1108 5038 4833 23 0 0 0 chr4 22218580 22218603 -162070059 + AT_rich Low_complexity Low_complexity 1 23 0 424 177 16 8 chr4 22218613 22218737 -162069925 - L1M4 LINE L1 -3175 2971 2847 342 250 38 30 chr4 22218835 22218967 -162069695 - MER104 DNA Tc2 -17 163 31 244 299 80 76 chr4 22219011 22219429 -162069233 + L2 LINE L2 2724 3155 -158 30 27 0 0 chr4 22219791 22219828 -162068834 + AT_rich Low_complexity Low_complexity 1 37 0 379 289 94 8 chr4 22220054 22220182 -162068480 + L2 LINE L2 3173 3311 -2 1601 189 29 3 chr4 22220407 22220720 -162067942 - MLT1A1 LTR MaLR 0 365 45 223 129 0 0 chr4 22220722 22220753 -162067909 + (TCCC)n Simple_repeat Simple_repeat 1 31 0 773 154 7 0 chr4 22220753 22220896 -162067766 + CT-rich Low_complexity Low_complexity 3 146 0 1771 175 24 0 chr4 22220898 22221195 -162067467 - AluJb SINE Alu -6 306 3 388 109 0 0 chr4 22221197 22221252 -162067410 - MLT1A1 LTR MaLR -310 55 1 505 314 76 52 chr4 22221554 22221936 -162066726 - MLT1I LTR MaLR 0 409 19 321 309 85 42 chr4 22222187 22222517 -162066145 - L1M4 LINE L1 -2686 3460 3117 825 318 63 36 chr4 22222671 22223304 -162065358 - L1MC4a LINE L1 -1849 5959 5310 732 328 81 30 chr4 22223357 22223998 -162064664 - L1MC4a LINE L1 -906 5240 4567 313 209 71 88 chr4 22224120 22224245 -162064417 - MLT1A2 LTR MaLR -5 369 260 3051 229 21 16 chr4 22224338 22225130 -162063532 - MLT1B-int LTR MaLR -481 890 3 623 259 63 5 chr4 22225134 22225323 -162063339 - MLT1B LTR MaLR -2 388 189 266 246 0 0 chr4 22225323 22225388 -162063274 + MLT1I LTR MaLR 187 251 -139 1288 352 56 36 chr4 22225402 22226545 -162062117 + ERVL LTR ERVL 4164 5329 -435 283 288 105 37 chr4 22226812 22227003 -162061659 + HAL1 LINE L1 2111 2314 -193 3504 158 45 2 chr4 22227156 22227801 -162060861 - L1MC1 LINE L1 -405 5928 5256 1990 240 55 50 chr4 22227840 22227941 -162060721 - L1MC1 LINE L1 -880 5266 5167 192 40 0 0 chr4 22227941 22227966 -162060696 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1990 240 55 50 chr4 22227966 22227990 -162060672 - L1MC1 LINE L1 -979 5167 5145 1570 133 0 40 chr4 22227990 22228238 -162060424 - AluSx SINE Alu -74 238 1 1990 240 55 50 chr4 22228238 22228893 -162059769 - L1MC1 LINE L1 -1001 5145 4481 2167 114 76 12 chr4 22231502 22231844 -162056818 - THE1B LTR MaLR 0 364 1 272 240 52 31 chr4 22232911 22233007 -162055655 + MLT1J2 LTR MaLR 68 165 -285 334 186 0 17 chr4 22233151 22233210 -162055452 + MLT1I LTR MaLR 352 409 0 1925 179 144 2 chr4 22233503 22233899 -162054763 - LTR47A LTR ERVL 0 452 1 218 372 54 23 chr4 22234307 22234436 -162054226 + L2 LINE L2 2928 3060 -212 234 128 0 0 chr4 22235005 22235044 -162053618 + (T)n Simple_repeat Simple_repeat 1 39 0 754 320 37 10 chr4 22235489 22235786 -162052876 + L1M3c LINE L1 523 827 -5836 261 292 31 42 chr4 22235753 22235849 -162052813 + L1M3c LINE L1 1290 1384 -5269 * 284 264 64 18 chr4 22235877 22235987 -162052675 + L1M3c LINE L1 1315 1429 -5234 2517 254 32 4 chr4 22236049 22236778 -162051884 + L1M3c LINE L1 1342 2090 -4573 398 301 65 0 chr4 22236862 22236985 -162051677 - MIR SINE MIR -72 190 60 248 306 0 0 chr4 22237129 22237201 -162051461 + CT-rich Low_complexity Low_complexity 1 72 0 441 265 27 138 chr4 22239013 22239073 -162049589 - MLT1J LTR MaLR -140 371 306 2068 125 24 0 chr4 22239073 22239361 -162049301 + AluSq SINE Alu 1 295 -18 441 265 27 138 chr4 22239361 22239598 -162049064 - MLT1J LTR MaLR -205 306 107 36 0 0 0 chr4 22239600 22239636 -162049026 + AT_rich Low_complexity Low_complexity 1 36 0 467 298 147 31 chr4 22239863 22240255 -162048407 - LTR33A LTR ERVL -47 476 66 338 298 25 63 chr4 22240413 22240571 -162048091 + MIR SINE MIR 49 200 -62 525 303 20 10 chr4 22240736 22240934 -162047728 - MIR SINE MIR -46 216 17 23 54 0 0 chr4 22240989 22241026 -162047636 + AT_rich Low_complexity Low_complexity 1 37 0 252 0 0 0 chr4 22241131 22241159 -162047503 + (A)n Simple_repeat Simple_repeat 1 28 0 750 303 31 18 chr4 22241563 22241791 -162046871 - MIR SINE MIR -29 233 3 2300 91 0 0 chr4 22241818 22242125 -162046537 - AluSx SINE Alu -5 307 1 295 379 107 35 chr4 22243540 22243878 -162044784 + MLT1K LTR MaLR 69 430 -158 1236 34 0 0 chr4 22243901 22244050 -162044612 + (GAA)n Simple_repeat Simple_repeat 2 150 0 260 243 72 73 chr4 22244339 22244467 -162044195 - MLT1H1 LTR MaLR 0 595 410 509 250 39 82 chr4 22244593 22244830 -162043832 - MLT1H1 LTR MaLR -289 266 39 1379 220 72 0 chr4 22246530 22246848 -162041814 - MER58B DNA MER1_type 0 341 1 2048 156 84 17 chr4 22246973 22247377 -162041285 + MSTB1 LTR MaLR 1 431 -1 530 227 13 39 chr4 22247569 22247723 -162040939 + MER58 DNA MER1_type 84 233 -108 211 307 27 0 chr4 22247777 22247852 -162040810 - MIR SINE MIR 0 262 186 216 250 0 33 chr4 22248107 22248167 -162040495 - MIR SINE MIR -101 161 104 990 329 40 3 chr4 22248348 22248722 -162039940 - LTR16B LTR ERVL -74 390 3 251 312 47 53 chr4 22250549 22250719 -162037943 + L2 LINE L2 3114 3282 -31 667 285 77 59 chr4 22252017 22252340 -162036322 + LTR16A LTR ERVL 95 423 -27 1111 251 92 8 chr4 22253062 22253660 -162035002 + MER114 LTR ERV 1 648 0 2890 182 10 17 chr4 22253867 22254466 -162034196 - L1MB2 LINE L1 -4 6167 5573 1245 127 25 15 chr4 22254470 22254667 -162033995 + THE1B LTR MaLR 14 212 -152 180 0 0 0 chr4 22254824 22254844 -162033818 + (CA)n Simple_repeat Simple_repeat 1 20 0 297 346 60 11 chr4 22254863 22255045 -162033617 - MLT1J LTR MaLR -320 191 1 2280 104 0 3 chr4 22255606 22255913 -162032749 + AluSc SINE Alu 3 308 -1 23 33 0 0 chr4 22255983 22256013 -162032649 + AT_rich Low_complexity Low_complexity 1 30 0 887 18 18 9 chr4 22256397 22256511 -162032151 + L1PA4 LINE L1 6041 6155 0 276 344 62 23 chr4 22256593 22256721 -162031941 + L2 LINE L2 3179 3311 -2 279 0 0 0 chr4 22256965 22256996 -162031666 + (CA)n Simple_repeat Simple_repeat 2 32 0 22 35 0 0 chr4 22257166 22257195 -162031467 + AT_rich Low_complexity Low_complexity 1 29 0 24 67 0 0 chr4 22257361 22257406 -162031256 + AT_rich Low_complexity Low_complexity 1 45 0 388 136 0 0 chr4 22258514 22258573 -162030089 + THE1B LTR MaLR 306 364 0 4872 223 23 73 chr4 22258573 22258700 -162029962 - L1M4 LINE L1 -598 5586 5454 635 65 11 0 chr4 22258700 22258792 -162029870 - L1MA1 LINE L1 0 6302 6210 4872 223 23 73 chr4 22258792 22258829 -162029833 - L1M4 LINE L1 -730 5454 5417 221 0 0 33 chr4 22258829 22258859 -162029803 + (TTTTA)n Simple_repeat Simple_repeat 1 29 0 2414 81 3 12 chr4 22258861 22259196 -162029466 - L1PA7 LINE L1 -4 6150 5819 4872 223 23 73 chr4 22259196 22260995 -162027667 - L1M4 LINE L1 -768 5416 3725 1991 167 108 15 chr4 22261002 22261392 -162027270 - MSTB LTR MaLR 0 426 1 3961 209 116 26 chr4 22261398 22262495 -162026167 - MSTB-int LTR MaLR -7 1644 317 2286 82 4 0 chr4 22262495 22262775 -162025887 - AluSp SINE Alu -32 281 1 3961 209 116 26 chr4 22262775 22263122 -162025540 - MSTB-int LTR MaLR -1334 317 3 1927 183 80 10 chr4 22263122 22263520 -162025142 - MSTB LTR MaLR 0 426 1 1202 227 152 25 chr4 22263522 22264113 -162024549 - L1M4 LINE L1 -2424 3722 3057 1512 167 12 0 chr4 22264227 22264484 -162024178 + L1MC1 LINE L1 6074 6333 0 1389 248 98 21 chr4 22264811 22265238 -162023424 + MLT1E LTR MaLR 127 586 -7 429 258 174 24 chr4 22265537 22265704 -162022958 + MIR SINE MIR 71 262 0 220 293 0 89 chr4 22266537 22266660 -162022002 - MIR SINE MIR -30 232 121 686 280 105 52 chr4 22267419 22267858 -162020804 - MLT1C LTR MaLR 0 467 6 218 307 44 51 chr4 22267954 22268091 -162020571 + MIR SINE MIR 124 259 -3 269 383 27 13 chr4 22268238 22268387 -162020275 - MIR3 SINE MIR -28 180 30 846 210 6 0 chr4 22268521 22268683 -162019979 + MLT2B1 LTR ERVL 1 163 -357 299 176 0 15 chr4 22268708 22268776 -162019886 + (TG)n Simple_repeat Simple_repeat 2 68 0 316 271 8 45 chr4 22268776 22268909 -162019753 + (TATATG)n Simple_repeat Simple_repeat 2 129 0 573 252 17 0 chr4 22268909 22269028 -162019634 + Tigger3(Golem) DNA MER2_type 2 122 -2907 * 2989 111 111 110 chr4 22269018 22269757 -162018905 + Tigger3(Golem) DNA MER2_type 2288 3027 -2 344 222 29 8 chr4 22269757 22270008 -162018654 + (TA)n Simple_repeat Simple_repeat 1 256 0 1444 241 111 24 chr4 22270049 22270468 -162018194 + MLT2B1 LTR ERVL 1 396 -57 276 30 0 0 chr4 22270468 22270501 -162018161 + (TG)n Simple_repeat Simple_repeat 2 34 0 1444 241 111 24 chr4 22270501 22270531 -162018131 + MLT2B1 LTR ERVL 396 422 -31 233 147 53 27 chr4 22270535 22270610 -162018052 + (TTATA)n Simple_repeat Simple_repeat 3 79 0 320 50 0 0 chr4 22270610 22270650 -162018012 - HERVL LTR ERVL -5614 40 1 1032 152 0 0 chr4 22270689 22270854 -162017808 + MER65A LTR ERV1 234 398 -47 662 279 0 0 chr4 22270874 22271035 -162017627 + HERVL-B1 LTR ERVL 3 163 -5491 2442 241 31 22 chr4 22271051 22271595 -162017067 + MSTD-int LTR MaLR 1187 1735 0 879 240 77 28 chr4 22271630 22271974 -162016688 + MSTD LTR MaLR 6 396 0 4993 167 65 11 chr4 22271974 22272933 -162015729 + ERVL-B1 LTR ERVL 4704 5713 -51 230 205 0 60 chr4 22272933 22273016 -162015646 + (TATATG)n Simple_repeat Simple_repeat 4 81 0 1235 237 41 109 chr4 22273039 22273432 -162015230 + MLT2B1 LTR ERVL 1 366 -48 273 178 9 84 chr4 22273477 22273584 -162015078 + (TATATG)n Simple_repeat Simple_repeat 4 102 0 236 343 0 0 chr4 22273752 22273825 -162014837 + L2 LINE L2 3241 3313 0 1392 129 0 0 chr4 22274451 22274644 -162014018 + AluSg/x SINE Alu 98 290 -22 180 111 0 0 chr4 22274651 22274678 -162013984 + (TAG)n Simple_repeat Simple_repeat 1 27 0 1043 221 84 58 chr4 22274838 22275218 -162013444 - MLT1B LTR MaLR 0 390 1 340 328 55 45 chr4 22276842 22277043 -162011619 + L3 LINE CR1 898 1100 -477 492 376 32 29 chr4 22277315 22277658 -162011004 + L3 LINE CR1 1228 1571 -6 23 33 0 0 chr4 22277782 22277812 -162010850 + AT_rich Low_complexity Low_complexity 1 30 0 250 200 0 25 chr4 22277837 22277917 -162010745 + (TA)n Simple_repeat Simple_repeat 2 79 0 269 272 0 22 chr4 22277921 22278013 -162010649 - L1MC4 LINE L1 -1339 6703 6614 * 1009 294 137 4 chr4 22278003 22278469 -162010193 + L1ME3A LINE L1 5638 6165 -5 1400 248 15 24 chr4 22278846 22278904 -162009758 - L1M4 LINE L1 -3035 2999 2942 2540 129 44 2 chr4 22278904 22279315 -162009347 + MSTA LTR MaLR 1 428 0 1400 248 15 24 chr4 22279315 22279719 -162008943 - L1M4 LINE L1 -3092 2942 2541 304 212 12 12 chr4 22279724 22279809 -162008853 - L1M4 LINE L1 -4887 1068 984 28 48 0 0 chr4 22279986 22280028 -162008634 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr4 22280658 22280679 -162007983 + AT_rich Low_complexity Low_complexity 1 21 0 531 66 0 0 chr4 22281230 22281306 -162007356 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 2040 124 6 39 chr4 22282189 22282544 -162006118 - L1M3 LINE L1 -416 5752 5410 1763 167 128 34 chr4 22282556 22282773 -162005889 - MSTB1 LTR MaLR -13 419 224 2169 101 7 0 chr4 22282773 22283070 -162005592 - AluSp SINE Alu -13 300 2 1763 167 128 34 chr4 22283070 22283235 -162005427 - MSTB1 LTR MaLR -208 224 1 7410 219 16 25 chr4 22283247 22284898 -162003764 - MSTB1-int LTR MaLR -14 1637 2 1087 173 81 18 chr4 22284901 22285257 -162003405 - MSTB1 LTR MaLR -2 430 1 390 214 0 12 chr4 22285370 22285454 -162003208 - MSTB LTR MaLR -336 90 8 1015 195 9 4 chr4 22285468 22285694 -162002968 - L1M3 LINE L1 -762 5384 5158 1882 196 7 19 chr4 22285696 22286119 -162002543 + L1MB2 LINE L1 5752 6169 -2 186 250 236 57 chr4 22288324 22288536 -162000126 + L2 LINE L2 1795 2044 -1270 216 262 98 0 chr4 22288657 22288718 -161999944 + MIR SINE MIR 186 252 -10 237 371 65 21 chr4 22289023 22289209 -161999453 + L2 LINE L2 2767 2960 -354 232 169 108 72 chr4 22289295 22289378 -161999284 - MIR SINE MIR -117 145 60 1404 128 11 92 chr4 22289667 22289940 -161998722 + MSTC LTR MaLR 1 251 -177 2575 258 57 51 chr4 22290157 22290803 -161997859 - L1ME1 LINE L1 -3 6163 5522 1769 165 131 28 chr4 22290803 22291191 -161997471 + MSTA LTR MaLR 1 428 0 2575 258 57 51 chr4 22291191 22291715 -161996947 - L1ME1 LINE L1 -644 5522 4975 180 0 0 0 chr4 22291715 22291735 -161996927 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2575 258 57 51 chr4 22291735 22292218 -161996444 - L1ME1 LINE L1 -1191 4975 4496 24 32 0 0 chr4 22292288 22292319 -161996343 + AT_rich Low_complexity Low_complexity 1 31 0 317 290 40 0 chr4 22292337 22292448 -161996214 + MLT2A2 LTR ERVL 281 461 -93 4128 199 23 10 chr4 22292548 22293776 -161994886 - L1M2 LINE L1 -694 5597 4348 * 5272 200 24 7 chr4 22293758 22295078 -161993584 - L1PB2 LINE L1 -2 6149 4795 189 0 0 0 chr4 22295078 22295099 -161993563 + (CTATT)n Simple_repeat Simple_repeat 5 25 0 5272 200 24 7 chr4 22295099 22295377 -161993285 - L1PB2 LINE L1 -1356 4795 4523 1445 278 23 23 chr4 22295769 22296208 -161992454 - L1M3b LINE L1 -5829 452 14 * 1565 269 22 22 chr4 22296190 22296774 -161991888 - L1ME1 LINE L1 -1773 4373 3790 186 330 115 58 chr4 22297023 22297214 -161991448 + L3 LINE CR1 900 1101 -476 239 378 28 21 chr4 22297570 22297713 -161990949 + L3 LINE CR1 1384 1527 -50 291 325 68 86 chr4 22299364 22299877 -161988785 - L2 LINE L2 -369 2945 2442 247 361 8 34 chr4 22299931 22300050 -161988612 + MER5A DNA MER1_type 9 124 -65 395 281 117 29 chr4 22301759 22301930 -161986732 + MER5A DNA MER1_type 1 186 -3 29 78 0 0 chr4 22301993 22302057 -161986605 + AT_rich Low_complexity Low_complexity 1 64 0 356 311 140 6 chr4 22302424 22302588 -161986074 + MIR SINE MIR 17 202 -60 1090 195 186 30 chr4 22302641 22303011 -161985651 + MSTC LTR MaLR 1 428 0 203 203 0 85 chr4 22303039 22303098 -161985564 + MIR SINE MIR 208 261 -1 2329 113 3 51 chr4 22303272 22303645 -161985017 + THE1A LTR MaLR 1 355 0 417 356 27 11 chr4 22303906 22304094 -161984568 + MIR SINE MIR 2 192 -70 29 47 0 0 chr4 22304623 22304666 -161983996 + AT_rich Low_complexity Low_complexity 1 43 0 221 302 203 16 chr4 22306529 22306721 -161981941 + MIR SINE MIR 3 230 -32 192 384 64 25 chr4 22307465 22307668 -161980994 - MIR SINE MIR -38 224 14 216 200 0 46 chr4 22307765 22307830 -161980832 + (TAA)n Simple_repeat Simple_repeat 1 62 0 233 349 94 0 chr4 22308755 22308861 -161979801 + L2 LINE L2 2934 3049 -264 576 292 0 60 chr4 22309028 22309213 -161979449 - MER58B DNA MER1_type 0 341 168 2146 116 3 0 chr4 22309217 22309511 -161979151 + AluSp SINE Alu 8 302 -11 258 316 13 0 chr4 22309597 22309676 -161978986 + L2 LINE L2 3193 3272 0 252 308 238 19 chr4 22310158 22310372 -161978290 - MIR SINE MIR 0 262 2 320 345 74 7 chr4 22310642 22310790 -161977872 - MIR3 SINE MIR -17 191 34 270 0 0 0 chr4 22310889 22310919 -161977743 + (TG)n Simple_repeat Simple_repeat 2 31 0 692 279 54 20 chr4 22310973 22311177 -161977485 - MIR SINE MIR -32 230 20 1742 114 55 4 chr4 22311676 22311948 -161976714 - L1PA13 LINE L1 -7 6156 5871 815 57 0 0 chr4 22311948 22312053 -161976609 + L1P4 LINE L1 5673 5777 -386 401 248 124 39 chr4 22312181 22312463 -161976199 + HAL1 LINE L1 2111 2416 -91 1306 86 0 0 chr4 22312692 22312854 -161975808 + AluSq SINE Alu 1 162 -151 30 27 0 0 chr4 22312868 22312905 -161975757 + AT_rich Low_complexity Low_complexity 1 37 0 298 247 21 21 chr4 22312936 22312996 -161975666 + CT-rich Low_complexity Low_complexity 4 67 -29 1816 157 3 11 chr4 22312996 22313306 -161975356 - AluSx SINE Alu 0 308 1 298 247 21 21 chr4 22313306 22313337 -161975325 + CT-rich Low_complexity Low_complexity 66 96 0 411 201 13 31 chr4 22313354 22313513 -161975149 + CT-rich Low_complexity Low_complexity 4 159 0 330 240 171 8 chr4 22314076 22314205 -161974457 - MIR SINE MIR -64 198 49 713 237 16 8 chr4 22314444 22314752 -161973910 + MLT1A1 LTR MaLR 1 365 0 243 376 37 31 chr4 22314998 22315160 -161973502 + L2 LINE L2 3088 3250 -22 256 252 53 139 chr4 22316282 22316433 -161972229 + MIR3 SINE MIR 30 167 -41 406 268 8 49 chr4 22317515 22317638 -161971024 + L2 LINE L2 3192 3309 -4 23 0 0 0 chr4 22317925 22317948 -161970714 + AT_rich Low_complexity Low_complexity 1 23 0 219 342 5 14 chr4 22318244 22318339 -161970323 + MER91 DNA MER1_type 101 187 -3 234 128 0 0 chr4 22318369 22318408 -161970254 + (CA)n Simple_repeat Simple_repeat 1 39 0 231 322 42 106 chr4 22318649 22318913 -161969749 + L2 LINE L2 3022 3268 -4 289 307 47 31 chr4 22319111 22319238 -161969424 + MIR SINE MIR 36 164 -98 2109 111 14 0 chr4 22319276 22319573 -161969089 + AluSc SINE Alu 1 301 -8 260 250 125 36 chr4 22320249 22320361 -161968301 + MIR SINE MIR 20 141 -121 180 321 62 12 chr4 22320486 22320567 -161968095 + MIR SINE MIR 22 106 -156 192 77 0 0 chr4 22320578 22320604 -161968058 + (T)n Simple_repeat Simple_repeat 1 26 0 325 186 0 0 chr4 22320627 22320686 -161967976 - L1MB5 LINE L1 -8 6166 6108 223 226 0 19 chr4 22321453 22321506 -161967156 + (TA)n Simple_repeat Simple_repeat 1 52 0 * 301 341 15 8 chr4 22321479 22321611 -161967051 + L1MC4 LINE L1 6586 6718 -1324 255 152 38 0 chr4 22321614 22321693 -161966969 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 2790 123 34 0 chr4 22321817 22322225 -161966437 + MER57B LTR ERV1 13 434 0 222 297 47 70 chr4 22322771 22322899 -161965763 - L2 LINE L2 -3 3269 3145 267 253 0 76 chr4 22323573 22323652 -161965010 + L2 LINE L2 3239 3311 -2 679 220 29 23 chr4 22323891 22324064 -161964598 + MIR SINE MIR 89 262 0 391 331 0 8 chr4 22324334 22324455 -161964207 - MIR SINE MIR -128 134 15 555 322 53 23 chr4 22325645 22325909 -161962753 - MLT1I LTR MaLR -74 335 64 434 255 76 11 chr4 22326329 22326589 -161962073 + L1M4c LINE L1 3155 3435 -4130 227 250 0 0 chr4 22326590 22326642 -161962020 + LTR30 LTR ERV1 1 52 -670 537 72 0 0 chr4 22326642 22326711 -161961951 + LTR12 LTR ERV1 53 121 -593 * 1651 83 31 10 chr4 22326708 22326966 -161961696 + LTR12 LTR ERV1 349 714 0 552 239 28 23 chr4 22326990 22327204 -161961458 + L1M4c LINE L1 3434 3648 -3917 1041 198 20 142 chr4 22327204 22327613 -161961049 + MLT1A1 LTR MaLR 1 359 -6 4539 239 44 24 chr4 22327635 22328438 -161960224 + L1M4c LINE L1 3672 4458 -3107 2269 88 3 22 chr4 22328438 22328756 -161959906 + AluSx SINE Alu 1 312 0 4539 239 44 24 chr4 22328756 22329105 -161959557 + L1M4c LINE L1 4458 4799 -2766 1807 63 9 0 chr4 22329105 22329326 -161959336 + AluSp SINE Alu 89 311 -2 4539 239 44 24 chr4 22329326 22329698 -161958964 + L1M4c LINE L1 4799 5227 -2338 1058 288 119 34 chr4 22330013 22330566 -161958096 + MLT1E2 LTR MaLR 22 621 -5 770 279 40 5 chr4 22330710 22330932 -161957730 - MIR SINE MIR -26 236 7 180 77 0 0 chr4 22331304 22331330 -161957332 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 987 226 5 0 chr4 22331361 22331573 -161957089 + MER58A DNA MER1_type 12 224 0 2514 116 5 13 chr4 22331573 22331939 -161956723 - THE1C LTR MaLR 0 375 11 4915 82 25 23 chr4 22331939 22332626 -161956036 - LTR12 LTR ERV1 0 688 1 2514 116 5 13 chr4 22332626 22332637 -161956025 - THE1C LTR MaLR -364 11 1 27 29 0 0 chr4 22332657 22332691 -161955971 + AT_rich Low_complexity Low_complexity 1 34 0 211 371 34 0 chr4 22333046 22333135 -161955527 - MIR SINE MIR -85 177 86 629 161 0 0 chr4 22333994 22334087 -161954575 + AluSx SINE Alu 1 93 -220 4904 129 18 7 chr4 22334087 22334857 -161953805 + MER4E LTR ERV1 1 779 0 1515 124 0 18 chr4 22334857 22335075 -161953587 + AluSx SINE Alu 90 303 -9 1127 156 14 9 chr4 22335323 22335534 -161953128 - L1MA8 LINE L1 -211 6080 5869 840 197 34 0 chr4 22335534 22335735 -161952927 + L1MA8 LINE L1 6073 6287 -4 501 72 0 0 chr4 22335754 22335823 -161952839 - MER41B LTR ERV1 0 635 567 219 280 0 0 chr4 22336591 22336641 -161952021 - L2 LINE L2 -2 3311 3262 1806 175 75 34 chr4 22336720 22337159 -161951503 + LTR2B LTR ERV1 34 490 0 591 195 207 6 chr4 22337778 22337947 -161950715 + Tigger3(Golem) DNA MER2_type 2826 3028 -1 300 223 11 64 chr4 22337947 22338041 -161950621 - L1MC4 LINE L1 -1339 6703 6615 293 202 17 17 chr4 22338079 22338198 -161950464 + (TA)n Simple_repeat Simple_repeat 1 119 0 1302 238 122 19 chr4 22338239 22338650 -161950012 + MLT2B1 LTR ERVL 1 453 -67 276 30 0 0 chr4 22338658 22338691 -161949971 + (TG)n Simple_repeat Simple_repeat 2 34 0 256 167 59 20 chr4 22338698 22338800 -161949862 + (TTATA)n Simple_repeat Simple_repeat 3 108 0 307 50 0 0 chr4 22338800 22338840 -161949822 - HERVL LTR ERVL -5614 40 1 898 176 0 0 chr4 22338879 22339044 -161949618 + MER65A LTR ERV1 234 398 -47 2028 99 46 3 chr4 22339539 22339822 -161948840 + AluSg SINE Alu 1 295 -15 216 346 75 27 chr4 22340014 22340202 -161948460 + L2 LINE L2 1598 1794 -1520 997 213 43 3 chr4 22340231 22340560 -161948102 + L1P LINE L1 4960 5301 -845 916 245 90 97 chr4 22340699 22340813 -161947849 - L1M4 LINE L1 -1057 5089 4976 180 0 0 0 chr4 22340813 22340833 -161947829 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 916 245 90 97 chr4 22340833 22341319 -161947343 - L1M4 LINE L1 -1170 4976 4493 840 138 51 66 chr4 22341436 22341648 -161947014 + MLT2A2 LTR ERVL 298 453 0 1369 177 3 36 chr4 22341648 22341981 -161946681 - L1M2 LINE L1 -672 5619 5298 2452 266 38 2 chr4 22342216 22343002 -161945660 + L1 LINE L1 2270 3083 -3063 2075 128 24 0 chr4 22343002 22343290 -161945372 + AluSq SINE Alu 1 295 -18 385 243 0 0 chr4 22343453 22343527 -161945135 - MLT1J1 LTR MaLR -305 141 68 29 28 0 0 chr4 22343529 22343565 -161945097 + AT_rich Low_complexity Low_complexity 1 36 0 528 278 98 23 chr4 22343917 22344090 -161944572 + MIR SINE MIR 74 259 -3 2281 93 0 0 chr4 22344649 22344940 -161943722 + AluY SINE Alu 1 291 -20 410 234 73 44 chr4 22344994 22345131 -161943531 - MER5B DNA MER1_type -31 147 7 256 263 25 75 chr4 22345383 22345543 -161943119 + MER103 DNA DNA 2 153 -13 28 48 0 0 chr4 22345619 22345661 -161943001 + AT_rich Low_complexity Low_complexity 1 42 0 2198 110 0 7 chr4 22345776 22346085 -161942577 + AluSx SINE Alu 6 312 0 481 277 19 6 chr4 22346399 22346558 -161942104 + MLT1C LTR MaLR 1 161 -306 250 133 0 22 chr4 22346633 22346678 -161941984 + MLT1C LTR MaLR 226 269 -198 378 184 114 38 chr4 22346715 22346873 -161941789 - MLT2A2 LTR ERVL -1 452 283 2034 177 5 60 chr4 22347225 22347661 -161941001 + MLT2D LTR ERVL 3 414 0 2329 130 66 17 chr4 22348894 22349302 -161939360 - MSTA LTR MaLR 0 428 1 1930 129 31 34 chr4 22349302 22349683 -161938979 - MSTA-int LTR MaLR 0 1651 1272 21 0 0 0 chr4 22350565 22350586 -161938076 + AT_rich Low_complexity Low_complexity 1 21 0 297 346 41 60 chr4 22351063 22351329 -161937333 - L2 LINE L2 0 3272 3012 683 221 121 53 chr4 22351892 22352214 -161936448 + MER39 LTR ERV1 361 704 -3 3476 151 42 2 chr4 22352332 22352947 -161935715 + MER39B LTR ERV1 14 653 0 237 65 0 0 chr4 22353050 22353081 -161935581 + (CA)n Simple_repeat Simple_repeat 2 32 0 1424 115 12 16 chr4 22353084 22353336 -161935326 + LTR1 LTR ERV1 1 251 -534 311 274 97 32 chr4 22354252 22354376 -161934286 - L1ME3A LINE L1 -9 6161 6030 411 262 36 91 chr4 22354666 22354887 -161933775 - MER58C DNA MER1_type -2 213 5 433 152 0 95 chr4 22355455 22355560 -161933102 + L1M2 LINE L1 5452 5546 -754 471 318 41 82 chr4 22355655 22356020 -161932642 + L2 LINE L2 2923 3272 0 234 0 0 0 chr4 22356365 22356391 -161932271 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2008 123 40 7 chr4 22356683 22356983 -161931679 + AluSg SINE Alu 1 310 0 202 298 32 32 chr4 22357937 22358031 -161930631 - L2 LINE L2 -349 2964 2871 388 326 71 52 chr4 22358279 22358604 -161930058 - L2 LINE L2 -610 2704 2374 21 36 0 0 chr4 22359752 22359780 -161928882 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 22360779 22360807 -161927855 + AT_rich Low_complexity Low_complexity 1 28 0 616 328 43 17 chr4 22360930 22361165 -161927497 + MIR SINE MIR 11 251 -11 217 368 0 0 chr4 22361196 22361272 -161927390 + L3 LINE CR1 1495 1570 -7 257 305 168 30 chr4 22361553 22361720 -161926942 + MIR SINE MIR 21 210 -52 868 246 24 5 chr4 22361919 22362126 -161926536 - MER58A DNA MER1_type -13 211 1 2038 125 0 27 chr4 22363283 22363578 -161925084 + AluSx SINE Alu 9 295 -17 387 105 40 26 chr4 22364159 22364235 -161924427 + MER116 DNA Mariner 4 80 0 198 167 0 0 chr4 22364709 22364745 -161923917 + CT-rich Low_complexity Low_complexity 2 37 0 1965 154 7 0 chr4 22364914 22365212 -161923450 + AluSx SINE Alu 1 300 -12 220 256 80 51 chr4 22365512 22365649 -161923013 + L3 LINE CR1 974 1114 -463 850 190 36 137 chr4 22365852 22366080 -161922582 - MLT1A1 LTR MaLR -38 327 148 536 115 0 0 chr4 22366080 22366158 -161922504 - MADE1 DNA Mariner -2 78 1 850 190 36 137 chr4 22366158 22366293 -161922369 - MLT1A1 LTR MaLR -217 148 1 1713 198 23 5 chr4 22366710 22367094 -161921568 - MER57A LTR ERV1 -2 401 11 200 369 138 0 chr4 22368097 22368227 -161920435 - L2 LINE L2 0 3313 3166 304 342 61 77 chr4 22368232 22368624 -161920038 - L2 LINE L2 -8 3264 2879 380 292 124 27 chr4 22368653 22368910 -161919752 - L2 LINE L2 -483 2831 2550 2033 229 21 6 chr4 22369276 22369743 -161918919 + MLT1D LTR MaLR 3 476 -29 303 28 0 0 chr4 22369743 22369779 -161918883 + (TG)n Simple_repeat Simple_repeat 1 36 0 5448 123 22 9 chr4 22369803 22370749 -161917913 - L1PA13 LINE L1 0 6163 5210 13955 29 0 0 chr4 22470935 22472806 -161815856 - L1P1 LINE L1 -636 5519 3649 885 119 0 35 chr4 22472806 22472949 -161815713 - AluJb SINE Alu -174 138 1 355 357 42 65 chr4 22473089 22473442 -161815220 + L2 LINE L2 2888 3232 -40 265 170 10 140 chr4 22473500 22473571 -161815091 - MER115 DNA AcHobo 0 693 637 2843 0 0 3 chr4 22473571 22473880 -161814782 + AluYa5 SINE Alu 1 308 -3 265 170 10 140 chr4 22473880 22473908 -161814754 - MER115 DNA AcHobo -56 637 607 7472 188 20 36 chr4 22473923 22474811 -161813851 - L1PB4 LINE L1 -2 6154 5253 216 0 0 0 chr4 22474811 22474835 -161813827 + (TTG)n Simple_repeat Simple_repeat 1 24 0 7472 188 20 36 chr4 22474835 22476675 -161811987 - L1PB4 LINE L1 -903 5253 3462 418 192 75 25 chr4 22476696 22476816 -161811846 - Zaphod DNA AcHobo -169 3862 3737 1730 143 137 16 chr4 22476837 22477158 -161811504 + THE1B LTR MaLR 1 360 -4 45 55 0 0 chr4 22477382 22477455 -161811207 + AT_rich Low_complexity Low_complexity 1 73 0 1410 291 74 13 chr4 22477594 22478054 -161810608 - Zaphod DNA AcHobo -3523 508 21 22 56 0 0 chr4 22478608 22478644 -161810018 + AT_rich Low_complexity Low_complexity 1 36 0 2173 162 44 32 chr4 22479412 22479958 -161808704 - MLT2A2 LTR ERVL 0 554 1 3342 72 26 78 chr4 22479991 22480530 -161808132 - THE1B-int LTR MaLR -1069 511 1 2288 125 23 3 chr4 22480530 22480874 -161807788 - THE1B LTR MaLR 0 364 14 381 93 0 0 chr4 22481039 22481093 -161807569 + (TC)n Simple_repeat Simple_repeat 1 54 0 417 333 116 44 chr4 22482067 22482731 -161805931 + L2 LINE L2 1739 2450 -864 1590 220 65 44 chr4 22484061 22484556 -161804106 - MLT1D LTR MaLR 0 505 1 540 187 53 64 chr4 22484574 22484761 -161803901 - MER53 DNA DNA -1 188 4 2342 80 3 19 chr4 22485042 22485354 -161803308 - AluSg SINE Alu 0 310 4 842 126 0 0 chr4 22485356 22485491 -161803171 - L1 LINE L1 -1493 4653 4519 1768 166 10 0 chr4 22485630 22485932 -161802730 + AluSp SINE Alu 1 305 -8 461 184 26 9 chr4 22486013 22486127 -161802535 - L1MA4 LINE L1 0 6300 6185 229 246 0 0 chr4 22487366 22487400 -161801262 + (TTCA)n Simple_repeat Simple_repeat 2 38 -20 2016 125 0 14 chr4 22487400 22487695 -161800967 - AluSx SINE Alu -21 291 1 229 246 0 0 chr4 22487695 22487717 -161800945 + (TTCA)n Simple_repeat Simple_repeat 37 58 0 668 334 33 66 chr4 22487718 22488260 -161800402 - L2 LINE L2 -1 3312 2779 2544 58 0 6 chr4 22488857 22489170 -161799492 + AluY SINE Alu 1 311 0 253 337 63 34 chr4 22489892 22490067 -161798595 + MIR3 SINE MIR 19 198 -10 242 304 171 32 chr4 22490075 22490233 -161798429 + MIR3 SINE MIR 16 195 -13 23 0 0 0 chr4 22490562 22490585 -161798077 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 8 0 chr4 22490737 22490795 -161797867 + AT_rich Low_complexity Low_complexity 1 22 0 285 340 57 21 chr4 22491482 22491656 -161797006 - MIR SINE MIR -63 145 9 215 360 100 34 chr4 22492421 22492660 -161796002 + L3b LINE CR1 1108 1362 -221 2427 73 0 19 chr4 22494168 22494485 -161794177 + AluY SINE Alu 1 311 0 308 267 88 15 chr4 22494876 22495171 -161793491 + L1M4c LINE L1 1031 1354 -5030 1570 259 36 54 chr4 22495605 22495958 -161792704 + L1ME2 LINE L1 715 1050 -5359 1162 258 24 40 chr4 22495958 22496338 -161792324 + MLT1A2 LTR MaLR 1 374 0 1570 259 36 54 chr4 22496338 22496705 -161791957 + L1ME2 LINE L1 1050 1422 -4987 1958 247 84 38 chr4 22496726 22498055 -161790607 + L1ME2 LINE L1 5028 6414 -10 228 200 20 0 chr4 22498061 22498111 -161790551 + (TA)n Simple_repeat Simple_repeat 2 52 0 183 80 0 0 chr4 22498118 22498143 -161790519 + (TG)n Simple_repeat Simple_repeat 2 26 0 180 176 0 0 chr4 22498863 22498897 -161789765 + T-rich Low_complexity Low_complexity 2 35 0 195 370 43 14 chr4 22500403 22500541 -161788121 - L2 LINE L2 -221 3051 2910 12171 141 38 63 chr4 22500986 22503455 -161785207 + L1PA7 LINE L1 167 2573 -3573 7257 93 3 8 chr4 22503458 22505284 -161783378 + L1PA7 LINE L1 4329 6151 -3 21 57 0 0 chr4 22505284 22505319 -161783343 + AT_rich Low_complexity Low_complexity 1 35 0 287 308 172 40 chr4 22505577 22505804 -161782858 - MIR SINE MIR 0 262 6 292 236 29 132 chr4 22505855 22506029 -161782633 - L2 LINE L2 -226 3046 2891 1095 197 9 0 chr4 22506332 22506555 -161782107 - L1P LINE L1 -1080 5066 4842 * 3181 151 0 26 chr4 22506553 22506618 -161782044 + L1PA15 LINE L1 5519 5584 -581 1934 135 0 11 chr4 22506618 22506936 -161781726 - AluSc SINE Alu 0 315 1 3181 151 0 26 chr4 22506936 22507405 -161781257 + L1PA15 LINE L1 5584 6040 -125 385 92 0 2 chr4 22507405 22507465 -161781197 + Alu SINE Alu 1 52 -250 24 0 0 0 chr4 22507474 22507498 -161781164 + AT_rich Low_complexity Low_complexity 1 24 0 664 208 40 20 chr4 22507715 22507905 -161780757 - MLT1F1 LTR MaLR 0 567 432 * 885 220 53 104 chr4 22507876 22508194 -161780468 - MLT1F1 LTR MaLR -263 304 3 313 240 27 0 chr4 22508199 22508274 -161780388 + MIR SINE MIR 97 173 -89 1741 225 35 72 chr4 22508278 22508793 -161779869 - MLT2B1 LTR ERVL -8 512 17 21 0 0 0 chr4 22509980 22510001 -161778661 + AT_rich Low_complexity Low_complexity 1 21 0 227 274 0 0 chr4 22510062 22510113 -161778549 + L2 LINE L2 3217 3267 -5 772 165 6 98 chr4 22510322 22510486 -161778176 - MER5A DNA MER1_type -40 149 1 181 69 0 35 chr4 22510764 22510793 -161777869 - L3 LINE CR1 -316 1261 1234 219 256 98 24 chr4 22510864 22510946 -161777716 - MIR SINE MIR -154 108 21 2241 105 3 0 chr4 22511678 22511974 -161776688 - AluY SINE Alu -14 297 1 2084 66 2 2 chr4 22512161 22512725 -161775937 - L1PA7 LINE L1 -7 6147 5479 265 374 174 0 chr4 22513538 22513653 -161775009 - L2 LINE L2 -4 3268 3134 1891 253 10 2 chr4 22514139 22514633 -161774029 - L1M4 LINE L1 -1082 5064 4567 2002 130 10 0 chr4 22514944 22515237 -161773425 - AluSx SINE Alu -16 296 1 270 0 0 0 chr4 22515259 22515289 -161773373 + (TTA)n Simple_repeat Simple_repeat 2 31 0 198 365 27 0 chr4 22515490 22515564 -161773098 + L2 LINE L2 3227 3302 -11 213 65 0 0 chr4 22516895 22516926 -161771736 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 374 300 81 19 chr4 22517462 22517622 -161771040 + MIR SINE MIR 59 228 -34 2210 139 28 0 chr4 22518041 22518394 -161770268 - THE1B LTR MaLR -1 363 1 294 362 34 34 chr4 22519319 22519526 -161769136 + MIR3 SINE MIR 1 207 -1 627 286 132 0 chr4 22519792 22520005 -161768657 - MIR SINE MIR -13 249 9 28 29 0 0 chr4 22520048 22520083 -161768579 + AT_rich Low_complexity Low_complexity 1 35 0 367 287 30 10 chr4 22520093 22520194 -161768468 + MIR SINE MIR 49 151 -111 197 197 49 115 chr4 22520260 22520382 -161768280 - L2 LINE L2 -64 3249 3136 237 309 173 31 chr4 22520427 22520618 -161768044 - MLT1G LTR MaLR -94 496 279 276 322 95 19 chr4 22520688 22520963 -161767699 - L2 LINE L2 -252 3061 2714 1020 111 0 0 chr4 22521424 22521577 -161767085 + (TTTC)n Simple_repeat Simple_repeat 1 153 0 569 113 0 10 chr4 22521577 22521674 -161766988 + (TTCC)n Simple_repeat Simple_repeat 3 98 0 496 302 166 0 chr4 22522556 22522761 -161765901 + MIR SINE MIR 12 250 -12 271 298 0 0 chr4 22524258 22524342 -161764320 + (TGAA)n Simple_repeat Simple_repeat 1 84 0 420 143 0 14 chr4 22525385 22525455 -161763207 + MLT1D LTR MaLR 14 82 -423 1419 252 75 23 chr4 22525473 22525914 -161762748 + MLT1D LTR MaLR 38 501 -4 30 27 0 0 chr4 22527547 22527584 -161761078 + AT_rich Low_complexity Low_complexity 1 37 0 1976 80 4 36 chr4 22527928 22528203 -161760459 - AluSp SINE Alu -47 266 1 278 270 60 151 chr4 22528846 22529098 -161759564 - MIR SINE MIR -14 248 20 4576 179 11 6 chr4 22529141 22530441 -161758221 - L1PA16 LINE L1 -152 6014 4710 6494 204 11 12 chr4 22530441 22531881 -161756781 + L1M4 LINE L1 3266 4703 -1443 239 315 0 33 chr4 22532235 22532327 -161756335 - MLT1K LTR MaLR -56 532 444 414 299 40 40 chr4 22532396 22532570 -161756092 - MLT1K LTR MaLR -158 430 257 625 265 20 60 chr4 22532579 22532779 -161755883 + MER82 DNA MER2_type 1 192 -461 193 151 12 47 chr4 22532810 22532896 -161755766 + (TA)n Simple_repeat Simple_repeat 1 83 0 1830 204 46 59 chr4 22532913 22533374 -161755288 + MER82 DNA MER2_type 199 653 0 278 340 19 39 chr4 22533385 22533541 -161755121 - MLT1K LTR MaLR -409 179 27 2022 105 26 36 chr4 22534797 22535101 -161753561 - AluY SINE Alu -10 301 1 224 349 47 9 chr4 22535179 22535285 -161753377 + L2 LINE L2 1903 2012 -1302 244 316 20 31 chr4 22535322 22535420 -161753242 - L2 LINE L2 -18 3295 3199 310 303 73 9 chr4 22535910 22536019 -161752643 + L2 LINE L2 3156 3271 -1 213 309 0 0 chr4 22536103 22536158 -161752504 - MER5A DNA MER1_type 0 189 135 316 291 11 116 chr4 22536337 22536378 -161752284 - MER5B DNA MER1_type -6 172 128 216 0 0 0 chr4 22536378 22536402 -161752260 + (TC)n Simple_repeat Simple_repeat 1 24 0 316 291 11 116 chr4 22536402 22536549 -161752113 - MER5B DNA MER1_type -50 128 4 5073 183 24 19 chr4 22537614 22538657 -161750005 - L1MC1 LINE L1 -13 6320 5273 924 167 9 71 chr4 22538809 22539082 -161749580 - L1M LINE L1 -745 5401 5161 1358 229 8 11 chr4 22539412 22539765 -161748897 + L1M4 LINE L1 4918 5269 -877 931 256 0 31 chr4 22539766 22539993 -161748669 + Tigger5 DNA MER2_type 1 220 -2103 204 231 0 0 chr4 22540218 22540270 -161748392 + GA-rich Low_complexity Low_complexity 1 52 0 536 296 50 34 chr4 22540844 22541141 -161747521 - L1ME3A LINE L1 -216 5954 5653 990 229 89 65 chr4 22542268 22542717 -161745945 + MLT1C LTR MaLR 8 467 0 427 259 69 0 chr4 22542752 22542868 -161745794 + MIR SINE MIR 80 203 -59 23 54 0 0 chr4 22543216 22543253 -161745409 + AT_rich Low_complexity Low_complexity 1 37 0 2179 136 3 0 chr4 22543865 22544175 -161744487 - AluSx SINE Alu -1 311 1 493 278 158 5 chr4 22544411 22544620 -161744042 + MIR SINE MIR 22 262 0 1726 167 43 56 chr4 22544776 22545171 -161743491 + MLT1B LTR MaLR 1 390 0 997 141 19 19 chr4 22545650 22545806 -161742856 - FRAM SINE Alu -20 156 1 798 278 48 0 chr4 22545984 22546193 -161742469 + MIR SINE MIR 28 246 -16 210 283 0 0 chr4 22546242 22546295 -161742367 + L2 LINE L2 3219 3271 -1 451 301 19 62 chr4 22546679 22546888 -161741774 - MIR SINE MIR -6 256 57 1343 267 94 40 chr4 22547683 22548203 -161740459 + MLT1E LTR MaLR 46 593 0 203 264 19 0 chr4 22548234 22548287 -161740375 - L2 LINE L2 -5 3308 3255 203 318 12 24 chr4 22548365 22548450 -161740212 + MIR SINE MIR 152 235 -27 882 121 34 0 chr4 22548870 22549019 -161739643 + L1MA4 LINE L1 6139 6292 -8 1805 159 130 16 chr4 22549912 22550296 -161738366 - MSTA LTR MaLR 0 428 1 484 274 51 0 chr4 22550367 22550484 -161738178 - L2 LINE L2 -4 3309 3187 4659 101 5 0 chr4 22550498 22551151 -161737511 + L1PA13 LINE L1 5505 6160 -3 476 129 0 0 chr4 22551305 22551375 -161737287 + AluSc SINE Alu 1 70 -240 1384 131 0 19 chr4 22551421 22551627 -161737035 + AluSc SINE Alu 71 272 -37 294 87 0 0 chr4 22551627 22551673 -161736989 + (GA)n Simple_repeat Simple_repeat 2 47 0 645 14 0 0 chr4 22551673 22551747 -161736915 + (GGAA)n Simple_repeat Simple_repeat 4 77 0 543 228 99 41 chr4 22551865 22552036 -161736626 + MLT1J2 LTR MaLR 7 187 -263 287 244 71 54 chr4 22552079 22552247 -161736415 + MLT1J1 LTR MaLR 276 446 0 208 254 56 58 chr4 22552384 22552492 -161736170 - MIR3 SINE MIR -5 203 86 195 42 0 0 chr4 22552667 22552691 -161735971 + (TTTTTA)n Simple_repeat Simple_repeat 3 26 0 341 346 82 34 chr4 22553018 22553226 -161735436 + MIR SINE MIR 3 220 -42 5489 41 3 0 chr4 22553226 22553891 -161734771 + L1PA3 LINE L1 5489 6155 0 2204 122 3 3 chr4 22554146 22554457 -161734205 + AluSq SINE Alu 3 313 0 362 133 60 0 chr4 22554495 22554578 -161734084 + L1MA7 LINE L1 6201 6288 -3 351 78 0 0 chr4 22555579 22555630 -161733032 + (CA)n Simple_repeat Simple_repeat 1 51 0 237 284 206 21 chr4 22556326 22556467 -161732195 + MIR3 SINE MIR 24 190 -18 * 262 354 113 54 chr4 22556466 22556706 -161731956 + L2 LINE L2 2998 3251 -21 315 328 144 10 chr4 22556907 22557108 -161731554 - MIR SINE MIR 0 262 35 186 43 0 0 chr4 22557650 22557673 -161730989 + (TA)n Simple_repeat Simple_repeat 1 23 0 216 86 0 0 chr4 22557958 22557993 -161730669 + (T)n Simple_repeat Simple_repeat 1 35 0 200 339 83 28 chr4 22558813 22558993 -161729669 - MIR SINE MIR 0 262 73 711 213 11 55 chr4 22560896 22561079 -161727583 - L1PB4 LINE L1 -2 6154 5980 1654 183 174 11 chr4 22561084 22561445 -161727217 - MSTA LTR MaLR 0 428 9 435 177 0 0 chr4 22561453 22561532 -161727130 - L1PB4 LINE L1 -181 5975 5897 188 250 183 10 chr4 22561680 22561784 -161726878 - MIR SINE MIR -16 246 125 2953 15 0 0 chr4 22561786 22562121 -161726541 - L1PA3 LINE L1 -261 5894 5560 1940 34 0 0 chr4 22562121 22562347 -161726315 + L1PA3 LINE L1 5923 6155 0 1213 220 30 26 chr4 22562399 22562703 -161725959 - MLT1A1 LTR MaLR 0 365 61 480 304 20 14 chr4 22563090 22563238 -161725424 - MIR SINE MIR -7 255 107 1243 245 69 48 chr4 22563246 22563727 -161724935 - MLT1D LTR MaLR -8 497 7 429 149 0 0 chr4 22564373 22564447 -161724215 - L1PB4 LINE L1 -3 6153 6080 207 157 20 20 chr4 22564810 22564861 -161723801 + (TATAA)n Simple_repeat Simple_repeat 4 54 0 1346 331 68 25 chr4 22565459 22566030 -161722632 - MER115 DNA AcHobo -8 685 90 1315 182 88 51 chr4 22566292 22566666 -161721996 - MLT1B LTR MaLR 0 390 3 1593 217 31 14 chr4 22567157 22567516 -161721146 - MLT1A1 LTR MaLR 0 365 1 2134 118 0 10 chr4 22568523 22568827 -161719835 - AluSx SINE Alu -7 305 5 26 64 0 0 chr4 22569139 22569186 -161719476 + AT_rich Low_complexity Low_complexity 1 47 0 2043 205 35 6 chr4 22569401 22569893 -161718769 + L1MC2 LINE L1 5823 6328 -16 * 9054 32 1 0 chr4 22569882 22571736 -161716926 + L1PA4 LINE L1 4284 6150 -5 396 0 0 0 chr4 22571740 22571784 -161716878 + (TA)n Simple_repeat Simple_repeat 1 44 0 1963 141 7 23 chr4 22572678 22572984 -161715678 + AluSq SINE Alu 1 301 -12 22 35 0 0 chr4 22573598 22573627 -161715035 + AT_rich Low_complexity Low_complexity 1 29 0 11682 229 51 40 chr4 22574107 22578557 -161710105 + L1PB4 LINE L1 1 4545 -2313 2077 119 3 0 chr4 22578557 22578850 -161709812 + AluSx SINE Alu 4 297 -15 11682 229 51 40 chr4 22578850 22581190 -161707472 + L1PB4 LINE L1 4545 6857 -1 3814 150 36 15 chr4 22581221 22581487 -161707175 + L1MA4A LINE L1 5361 5620 -683 2029 139 48 17 chr4 22581487 22581840 -161706822 + THE1B LTR MaLR 1 364 0 3814 150 36 15 chr4 22581840 22582286 -161706376 + L1MA4A LINE L1 5620 6088 -215 1042 158 24 57 chr4 22582316 22582562 -161706100 + L1MA4A LINE L1 6053 6290 -13 1411 222 30 6 chr4 22582585 22582919 -161705743 + L1MB3 LINE L1 5587 5928 -255 24 0 0 0 chr4 22583961 22583985 -161704677 + AT_rich Low_complexity Low_complexity 1 24 0 476 266 22 0 chr4 22583985 22584124 -161704538 - L1MA8 LINE L1 -10 6281 6140 5514 115 17 5 chr4 22584305 22584832 -161703830 - L1PA13 LINE L1 0 6163 5644 1623 151 97 31 chr4 22584832 22585184 -161703478 + THE1C LTR MaLR 1 375 0 5514 115 17 5 chr4 22585184 22586269 -161702393 - L1PA13 LINE L1 -519 5644 4555 992 212 5 14 chr4 22586329 22586546 -161702116 - MER20 DNA MER1_type -2 217 3 384 282 0 27 chr4 22587353 22587463 -161701199 - MIR SINE MIR -147 115 9 792 246 94 39 chr4 22587891 22588200 -161700462 - MLT1C LTR MaLR -4 463 138 500 227 46 8 chr4 22588705 22588850 -161699812 - MLT1E2 LTR MaLR -355 150 1 811 274 56 94 chr4 22589123 22589624 -161699038 + Charlie8 DNA MER1_type 29 510 -1907 236 221 0 47 chr4 22590618 22590704 -161697958 + A-rich Low_complexity Low_complexity 2 83 0 21 0 0 0 chr4 22591118 22591139 -161697523 + AT_rich Low_complexity Low_complexity 1 21 0 281 288 104 50 chr4 22591500 22591983 -161696679 + HAL1b LINE L1 66 1663 -826 1532 238 106 64 chr4 22592397 22593239 -161695423 + L1MC5 LINE L1 6650 7526 -435 3315 115 8 14 chr4 22593757 22594271 -161694391 + MER9 LTR ERVK 1 511 0 265 370 46 0 chr4 22594713 22594821 -161693841 - L3 LINE CR1 -454 1123 1011 457 320 171 0 chr4 22594876 22595057 -161693605 - L3 LINE CR1 -757 820 609 29 28 0 0 chr4 22595566 22595602 -161693060 + AT_rich Low_complexity Low_complexity 1 36 0 26 64 0 0 chr4 22595725 22595772 -161692890 + AT_rich Low_complexity Low_complexity 1 47 0 275 335 42 38 chr4 22595779 22596015 -161692647 + MIR SINE MIR 25 261 -1 180 0 0 0 chr4 22596291 22596311 -161692351 + (CAA)n Simple_repeat Simple_repeat 2 21 0 377 313 163 0 chr4 22596940 22597121 -161691541 + MIR SINE MIR 39 247 -15 47 53 0 0 chr4 22597121 22597196 -161691466 + AT_rich Low_complexity Low_complexity 1 75 0 205 143 0 41 chr4 22597215 22597264 -161691398 + (TATAA)n Simple_repeat Simple_repeat 1 47 0 546 327 15 29 chr4 22597291 22597496 -161691166 + MIR SINE MIR 32 233 -29 339 113 0 0 chr4 22597546 22597599 -161691063 + (TCCCC)n Simple_repeat Simple_repeat 5 57 0 1124 149 0 17 chr4 22597615 22597790 -161690872 - AluJb SINE Alu -12 300 129 3333 20 10 0 chr4 22597791 22598185 -161690477 - L1PA3 LINE L1 0 6155 5758 1061 238 102 0 chr4 22598294 22598588 -161690074 + L1MA9 LINE L1 5950 6273 -39 21 36 0 0 chr4 22599122 22599150 -161689512 + AT_rich Low_complexity Low_complexity 1 28 0 1849 130 25 7 chr4 22599454 22599739 -161688923 - AluSg SINE Alu 0 310 21 185 289 186 51 chr4 22600460 22600616 -161688046 + MIR3 SINE MIR 4 180 -28 1893 189 31 3 chr4 22600619 22600974 -161687688 + MLT1A1 LTR MaLR 1 365 0 207 0 0 0 chr4 22602490 22602513 -161686149 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2761 306 147 35 chr4 22602553 22603900 -161684762 + L2 LINE L2 1015 2555 -759 2056 120 3 0 chr4 22603900 22604199 -161684463 + AluSg SINE Alu 1 300 -10 2761 306 147 35 chr4 22604199 22604380 -161684282 + L2 LINE L2 2555 2714 -600 854 271 136 71 chr4 22604410 22604928 -161683734 - MLT1G1 LTR MaLR 0 595 1 485 282 150 29 chr4 22604929 22605212 -161683450 + L2 LINE L2 2752 3066 -247 355 300 7 47 chr4 22605214 22605364 -161683298 + L2 LINE L2 3169 3312 -1 281 396 80 0 chr4 22606733 22606920 -161681742 + L2 LINE L2 2501 2702 -612 274 275 56 56 chr4 22607235 22607377 -161681285 + L2 LINE L2 3171 3312 -1 257 268 72 0 chr4 22607574 22607671 -161680991 + L1MC4 LINE L1 6598 6701 -1341 7093 21 1 0 chr4 22607968 22608794 -161679868 - L1PA3 LINE L1 0 6155 5329 3796 24 0 0 chr4 22608789 22609245 -161679417 + L1PA3 LINE L1 4897 5352 -794 * 331 291 80 34 chr4 22609373 22609548 -161679114 - L2 LINE L2 -15 3298 3116 311 272 142 24 chr4 22610150 22610290 -161678372 + MER58B DNA MER1_type 180 340 -1 220 359 38 50 chr4 22610438 22610597 -161678065 + L2 LINE L2 3085 3241 -31 783 309 75 75 chr4 22612852 22613227 -161675435 - LTR16C LTR ERVL -4 487 113 212 0 36 0 chr4 22613330 22613358 -161675304 + (GA)n Simple_repeat Simple_repeat 2 30 0 191 308 0 0 chr4 22613792 22613844 -161674818 - L2 LINE L2 0 3313 3262 234 0 0 0 chr4 22614544 22614570 -161674092 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 4671 62 11 2 chr4 22614572 22615184 -161673478 - L1PA8 LINE L1 -14 6158 5541 30 27 0 0 chr4 22615355 22615392 -161673270 + AT_rich Low_complexity Low_complexity 1 37 0 578 323 59 47 chr4 22615469 22615856 -161672806 + L3 LINE CR1 556 947 -630 249 33 0 0 chr4 22615862 22615892 -161672770 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 251 250 47 0 chr4 22616133 22616197 -161672465 - L2 LINE L2 0 3313 3247 760 340 135 15 chr4 22616224 22616891 -161671771 - L2 LINE L2 -1241 2073 1327 495 293 84 29 chr4 22616908 22617147 -161671515 - MLT1I LTR MaLR -2 407 156 1787 126 7 11 chr4 22617491 22617768 -161670894 + AluSx SINE Alu 30 305 -7 25 0 0 0 chr4 22619439 22619464 -161669198 + AT_rich Low_complexity Low_complexity 1 25 0 2122 117 3 0 chr4 22619472 22619779 -161668883 + AluSc SINE Alu 1 308 -1 180 0 0 0 chr4 22620911 22620931 -161667731 + (A)n Simple_repeat Simple_repeat 1 20 0 23 40 0 0 chr4 22620956 22620981 -161667681 + AT_rich Low_complexity Low_complexity 1 25 0 262 281 0 0 chr4 22621189 22621253 -161667409 - MIR SINE MIR -35 227 164 6698 28 1 0 chr4 22621295 22622088 -161666574 - L1PA4 LINE L1 -1361 4785 3992 3687 47 0 8 chr4 22622088 22622560 -161666102 + L1PA4 LINE L1 4786 5253 -893 7045 32 2 0 chr4 22622660 22623506 -161665156 + L1PA4 LINE L1 5308 6155 0 190 317 85 24 chr4 22623566 22623648 -161665014 - MIR SINE MIR -175 87 1 1970 135 26 34 chr4 22623649 22624027 -161664635 - THE1C LTR MaLR 0 375 1 21 57 0 0 chr4 22624162 22624197 -161664465 + AT_rich Low_complexity Low_complexity 1 35 0 332 264 11 11 chr4 22624886 22624973 -161663689 - L2 LINE L2 -2 3270 3184 1972 119 9 41 chr4 22625212 22625532 -161663130 + AluSx SINE Alu 1 310 -2 1755 171 0 23 chr4 22625534 22625646 -161663016 + AluJb SINE Alu 1 114 -198 2452 122 14 3 chr4 22625646 22626006 -161662656 + THE1B LTR MaLR 1 364 0 1755 171 0 23 chr4 22626006 22626192 -161662470 + AluJb SINE Alu 114 292 -20 248 230 11 92 chr4 22626196 22626283 -161662379 + MIR SINE MIR 182 261 -1 259 194 194 0 chr4 22626711 22626778 -161661884 + MER65B LTR ERV1 1 80 -451 225 309 72 42 chr4 22627405 22627641 -161661021 + L2 LINE L2 2810 3052 -220 805 284 4 6 chr4 22627694 22627930 -161660732 - MIR SINE MIR 0 262 30 2659 155 27 31 chr4 22728373 22728889 -161559773 - L1MC1 LINE L1 -186 6147 5634 216 0 0 0 chr4 22728963 22728987 -161559675 + (TTTTTG)n Simple_repeat Simple_repeat 3 26 0 2424 80 6 3 chr4 22729804 22730129 -161558533 + MLT2A2 LTR ERVL 1 326 -127 189 0 0 0 chr4 22731148 22731169 -161557493 + (TG)n Simple_repeat Simple_repeat 2 22 0 5639 132 3 3 chr4 22731311 22732398 -161556264 - L1PA14 LINE L1 -7 6154 5069 299 127 0 18 chr4 22733038 22733093 -161555569 - MLT2A1 LTR ERVL -1 443 390 347 192 13 0 chr4 22733093 22733171 -161555491 + (TA)n Simple_repeat Simple_repeat 1 79 0 229 250 60 0 chr4 22733176 22733260 -161555402 + L1MC4 LINE L1 6615 6703 -1339 398 147 29 10 chr4 22733273 22733375 -161555287 + (TA)n Simple_repeat Simple_repeat 2 105 0 540 222 44 72 chr4 22733759 22733939 -161554723 - MER97a DNA MER1_type? -715 179 5 245 329 132 20 chr4 22733950 22734102 -161554560 - MLT1J2 LTR MaLR -12 438 270 180 179 0 0 chr4 22734993 22735032 -161553630 + (TG)n Simple_repeat Simple_repeat 2 40 0 936 211 105 8 chr4 22735070 22735491 -161553171 - MLT1D LTR MaLR -18 487 1 198 0 0 0 chr4 22735506 22735528 -161553134 + (A)n Simple_repeat Simple_repeat 1 22 0 198 173 96 0 chr4 22735868 22735920 -161552742 - MIR SINE MIR -99 163 107 1044 211 98 92 chr4 22736970 22737417 -161551245 + MER66A LTR ERV1 59 467 -11 306 311 30 22 chr4 22737635 22737792 -161550870 + L1ME LINE L1 5579 5739 -382 2112 115 30 7 chr4 22737810 22738115 -161550547 - AluSx SINE Alu 0 312 1 28 29 0 0 chr4 22738262 22738297 -161550365 + AT_rich Low_complexity Low_complexity 1 35 0 441 319 136 8 chr4 22738695 22738930 -161549732 + MLT1K LTR MaLR 7 271 -317 1277 233 31 85 chr4 22739101 22739641 -161549021 - MER21B LTR ERV1 -56 807 384 238 247 59 71 chr4 22739649 22739734 -161548928 - MER21B LTR ERV1 -675 188 105 5222 111 42 1 chr4 22739764 22740542 -161548120 - L1PA13 LINE L1 -3 6160 5351 437 145 66 0 chr4 22740532 22740608 -161548054 - L1PA13 LINE L1 -2454 3692 3612 * 2252 49 59 0 chr4 22742537 22742824 -161545838 - AluY SINE Alu -7 304 1 236 324 59 47 chr4 22743353 22743523 -161545139 - MIR SINE MIR -32 230 59 325 269 41 112 chr4 22743636 22743904 -161544758 - MIR SINE MIR -1 261 13 467 341 16 6 chr4 22744261 22744443 -161544219 + MIR3 SINE MIR 12 195 -13 446 286 8 8 chr4 22745218 22745337 -161543325 - L2 LINE L2 -5 3308 3190 351 0 0 0 chr4 22745384 22745423 -161543239 + (TG)n Simple_repeat Simple_repeat 2 40 0 485 311 70 18 chr4 22745583 22745811 -161542851 + L2 LINE L2 2738 2977 -337 294 261 45 27 chr4 22746223 22746334 -161542328 + L3 LINE CR1 1379 1491 -86 1488 211 195 10 chr4 22746544 22746582 -161542080 - MLT1C LTR MaLR 0 467 437 18071 28 0 0 chr4 22746582 22749505 -161539157 + L1PA2 LINE L1 3232 6155 0 1488 211 195 10 chr4 22749505 22749673 -161538989 - MLT1C LTR MaLR -30 437 301 297 0 0 0 chr4 22749673 22749706 -161538956 + (TG)n Simple_repeat Simple_repeat 2 34 0 1488 211 195 10 chr4 22749706 22749892 -161538770 - MLT1C LTR MaLR -166 301 1 369 0 0 0 chr4 22750841 22750882 -161537780 + (TA)n Simple_repeat Simple_repeat 1 41 0 396 332 62 14 chr4 22751493 22751704 -161536958 - MLT1I LTR MaLR -188 221 1 243 0 0 0 chr4 22751950 22751977 -161536685 + (TC)n Simple_repeat Simple_repeat 2 28 0 270 0 0 0 chr4 22751979 22752009 -161536653 + (CA)n Simple_repeat Simple_repeat 2 31 0 457 143 31 10 chr4 22752009 22752107 -161536555 + CT-rich Low_complexity Low_complexity 3 102 0 22 35 0 0 chr4 22752317 22752346 -161536316 + AT_rich Low_complexity Low_complexity 1 29 0 1987 121 10 0 chr4 22753343 22753632 -161535030 - AluSx SINE Alu -20 292 1 278 412 38 0 chr4 22754240 22754371 -161534291 + L2 LINE L2 3137 3272 0 206 359 76 89 chr4 22754705 22755098 -161533564 + L2 LINE L2 2840 3227 -45 26 30 0 0 chr4 22755749 22755782 -161532880 + AT_rich Low_complexity Low_complexity 1 33 0 1065 215 79 21 chr4 22755818 22756158 -161532504 - L1MB7 LINE L1 -2 6182 5823 306 175 0 0 chr4 22757059 22757116 -161531546 - L1P4 LINE L1 -444 5722 5666 * 1274 169 16 4 chr4 22757114 22757363 -161531299 + L1PA16 LINE L1 5759 6010 -156 433 312 38 0 chr4 22757532 22757689 -161530973 - L2 LINE L2 -444 2870 2708 * 487 301 48 5 chr4 22757685 22757871 -161530791 - MIR SINE MIR -25 237 44 184 218 13 26 chr4 22758068 22758146 -161530516 + CT-rich Low_complexity Low_complexity 1 77 0 222 267 27 13 chr4 22758334 22758409 -161530253 + MER5A DNA MER1_type 113 188 -1 82 44 0 7 chr4 22760662 22760745 -161527917 + AT_rich Low_complexity Low_complexity 1 84 -50 180 0 0 0 chr4 22760745 22760765 -161527897 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 82 44 0 7 chr4 22760765 22760816 -161527846 + AT_rich Low_complexity Low_complexity 84 134 0 25 51 0 0 chr4 22760981 22761020 -161527642 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr4 22761113 22761136 -161527526 + AT_rich Low_complexity Low_complexity 1 23 0 804 188 7 0 chr4 22761250 22761399 -161527263 - MLT1D LTR MaLR -3 502 353 29733 34 5 1 chr4 22761403 22765798 -161522864 - L1PA3 LINE L1 0 6155 1741 944 231 63 72 chr4 22765798 22766161 -161522501 - MLT1D LTR MaLR -145 360 1 424 256 8 25 chr4 22766961 22767082 -161521580 + MLT1H LTR MaLR 125 243 -306 410 365 90 28 chr4 22767327 22767825 -161520837 + L2 LINE L2 2440 2968 -346 291 85 0 0 chr4 22768118 22768165 -161520497 + (TA)n Simple_repeat Simple_repeat 1 47 0 2394 81 0 0 chr4 22768165 22768461 -161520201 - AluSc SINE Alu -13 296 1 215 169 39 13 chr4 22769306 22769383 -161519279 + (TA)n Simple_repeat Simple_repeat 1 79 0 624 286 5 10 chr4 22769987 22770190 -161518472 + MER105 DNA DNA 1 202 -2 365 233 133 25 chr4 22770835 22770955 -161517707 + MIR SINE MIR 74 206 -56 187 394 64 0 chr4 22771105 22771199 -161517463 - MIR SINE MIR -158 104 5 627 285 47 5 chr4 22771406 22771620 -161517042 - L3b LINE CR1 -135 1448 1226 2087 100 55 0 chr4 22772705 22772995 -161515667 + AluSp SINE Alu 1 306 -7 230 380 50 0 chr4 22773109 22773209 -161515453 + L3 LINE CR1 1019 1123 -454 21 36 0 0 chr4 22773398 22773426 -161515236 + AT_rich Low_complexity Low_complexity 1 28 0 429 293 55 114 chr4 22774091 22774633 -161514029 + L2 LINE L2 2804 3313 0 1146 343 147 23 chr4 22775542 22776812 -161511850 - L2 LINE L2 -4 3309 1869 281 318 17 29 chr4 22776819 22776992 -161511670 + HAL1 LINE L1 1385 1555 -952 2860 214 65 3 chr4 22777046 22777719 -161510943 + L1MB2 LINE L1 5447 6161 -10 762 203 140 0 chr4 22777738 22777960 -161510702 - MER33 DNA MER1_type -67 257 5 217 339 58 37 chr4 22778170 22778412 -161510250 - L2 LINE L2 -1838 1476 1230 259 160 0 20 chr4 22778417 22778467 -161510195 + L2 LINE L2 3265 3313 0 563 268 21 0 chr4 22778522 22778664 -161509998 + MIR SINE MIR 97 241 -21 299 289 18 0 chr4 22778711 22778825 -161509837 - MER20B DNA MER1_type -1 782 667 22 0 0 0 chr4 22779106 22779128 -161509534 + AT_rich Low_complexity Low_complexity 1 22 0 256 259 0 0 chr4 22779351 22779409 -161509253 + MER94 DNA DNA 75 132 -2 659 197 7 7 chr4 22779807 22779959 -161508703 - MER53 DNA DNA 0 189 38 783 222 72 25 chr4 22780182 22780324 -161508338 - Charlie1 DNA MER1_type -5 2756 2622 2294 81 3 0 chr4 22780324 22780620 -161508042 + AluY SINE Alu 1 297 -14 472 24 61 0 chr4 22780621 22780703 -161507959 + (TA)n Simple_repeat Simple_repeat 1 87 0 783 222 72 25 chr4 22780703 22780837 -161507825 - Charlie1 DNA MER1_type -138 2623 2465 418 204 31 130 chr4 22780981 22781080 -161507582 + MLT1B LTR MaLR 230 308 -82 1927 126 0 63 chr4 22781080 22781414 -161507248 + AluSq SINE Alu 1 313 0 418 204 31 130 chr4 22781414 22781465 -161507197 + MLT1B LTR MaLR 308 364 -26 2394 162 91 29 chr4 22781465 22781991 -161506671 + MER34B LTR ERV1 1 559 -6 1065 138 110 0 chr4 22782051 22782273 -161506389 - L1MB2 LINE L1 -195 5976 5729 252 296 12 12 chr4 22782291 22782372 -161506290 - Charlie1 DNA MER1_type -2679 82 2 233 287 23 93 chr4 22782436 22782565 -161506097 - MIR SINE MIR -26 236 117 2106 93 0 7 chr4 22783196 22783476 -161505186 - AluY SINE Alu -14 297 20 183 286 0 24 chr4 22783905 22783947 -161504715 - L2 LINE L2 -33 3239 3199 260 241 276 0 chr4 22783947 22784034 -161504628 + MER34 LTR ERV1 1 111 -431 * 1132 214 49 106 chr4 22784006 22784497 -161504165 + MER39 LTR ERV1 243 705 -2 232 294 73 0 chr4 22784509 22784577 -161504085 - MIR SINE MIR -187 75 3 777 253 52 13 chr4 22785572 22785805 -161502857 + MIR SINE MIR 21 262 0 307 206 0 22 chr4 22786597 22786689 -161501973 + (TA)n Simple_repeat Simple_repeat 2 91 0 24 32 0 0 chr4 22786896 22786927 -161501735 + AT_rich Low_complexity Low_complexity 1 31 0 2147 78 35 0 chr4 22788344 22788665 -161499997 - AluY SINE Alu 0 331 1 201 189 0 38 chr4 22788665 22788680 -161499982 + T-rich Low_complexity Low_complexity 5 180 0 2283 123 123 5 chr4 22788784 22789167 -161499495 - MSTA LTR MaLR 0 428 1 30 0 0 0 chr4 22790757 22790787 -161497875 + AT_rich Low_complexity Low_complexity 1 30 0 673 111 0 0 chr4 22792498 22792597 -161496065 - AluS SINE Alu -214 99 1 25 0 0 0 chr4 22792729 22792754 -161495908 + AT_rich Low_complexity Low_complexity 1 25 0 489 189 38 0 chr4 22794345 22794477 -161494185 + CT-rich Low_complexity Low_complexity 2 138 0 1583 200 7 10 chr4 22794488 22794783 -161493879 - AluJo SINE Alu -16 296 3 754 181 16 11 chr4 22794909 22795003 -161493659 - MER53 DNA DNA -2 187 90 393 95 0 0 chr4 22795003 22795066 -161493596 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 754 181 16 11 chr4 22795066 22795153 -161493509 - MER53 DNA DNA -99 90 5 22 35 0 0 chr4 22795731 22795760 -161492902 + AT_rich Low_complexity Low_complexity 1 29 0 2047 248 58 19 chr4 22796289 22796822 -161491840 - MLT2B3 LTR ERVL 0 554 1 189 0 0 0 chr4 22797162 22797183 -161491479 + (CA)n Simple_repeat Simple_repeat 2 22 0 1791 191 21 0 chr4 22797183 22797518 -161491144 + MER7A DNA MER2_type 3 342 -4 3840 139 28 51 chr4 22797601 22798111 -161490551 - MER4D LTR ERV1 0 903 414 2171 123 0 7 chr4 22798111 22798420 -161490242 + AluSq SINE Alu 1 307 -6 3840 139 28 51 chr4 22798420 22798633 -161490029 - MER4D LTR ERV1 -489 414 197 446 240 20 20 chr4 22798633 22798733 -161489929 - MER41E LTR ERV1 0 512 413 5020 163 51 12 chr4 22798833 22800367 -161488295 - L1MA5 LINE L1 -54 6948 5368 392 169 0 0 chr4 22800508 22800579 -161488083 + L1PA16 LINE L1 6093 6163 -3 393 269 48 35 chr4 22800793 22800938 -161487724 + MIR SINE MIR 84 230 -32 467 357 51 0 chr4 22801060 22801256 -161487406 + MIR SINE MIR 57 262 0 261 114 0 23 chr4 22802564 22802608 -161486054 + MADE1 DNA Mariner 1 43 -37 363 23 0 0 chr4 22802673 22802717 -161485945 + (TG)n Simple_repeat Simple_repeat 2 45 0 414 236 94 31 chr4 22802766 22802893 -161485769 - L2 LINE L2 0 3313 3179 2644 189 68 41 chr4 22803117 22803825 -161484837 - L1MA5 LINE L1 -1510 5338 4612 2492 247 59 23 chr4 22803818 22804787 -161483875 - L1MA5 LINE L1 -2756 4092 3089 * 1678 211 6 0 chr4 22804947 22805307 -161483355 - L1MA5 LINE L1 -3975 2874 2513 * 2391 254 33 53 chr4 22805301 22805424 -161483238 - L1MA5 LINE L1 -4797 2052 1928 2028 122 6 6 chr4 22805424 22805736 -161482926 - AluSx SINE Alu 0 312 1 2391 254 33 53 chr4 22805736 22806460 -161482202 - L1MA5 LINE L1 -4921 1928 1222 347 297 88 0 chr4 22806657 22806805 -161481857 - MIR SINE MIR -28 234 74 284 274 66 28 chr4 22806908 22807014 -161481648 - MLT1H1 LTR MaLR 0 555 446 271 273 23 0 chr4 22807089 22807177 -161481485 + CT-rich Low_complexity Low_complexity 5 94 0 268 314 84 52 chr4 22807262 22807453 -161481209 + L2 LINE L2 2984 3180 -133 482 314 8 0 chr4 22807554 22807678 -161480984 + L2 LINE L2 3188 3312 -1 21 0 0 0 chr4 22807717 22807738 -161480924 + AT_rich Low_complexity Low_complexity 1 21 0 458 300 85 39 chr4 22807782 22808065 -161480597 - L1MA9 LINE L1 -30 6261 5966 25 65 0 0 chr4 22808334 22808380 -161480282 + AT_rich Low_complexity Low_complexity 1 46 0 2017 147 42 20 chr4 22809153 22809507 -161479155 + THE1B LTR MaLR 1 362 -2 438 20 0 0 chr4 22810313 22810364 -161478298 + (TAGA)n Simple_repeat Simple_repeat 3 53 0 21 0 0 0 chr4 22810443 22810464 -161478198 + AT_rich Low_complexity Low_complexity 1 21 0 184 381 124 9 chr4 22810593 22810698 -161477964 - MIR3 SINE MIR -49 159 43 1130 322 94 13 chr4 22811668 22812479 -161476183 + L2 LINE L2 2448 3311 -2 265 111 0 0 chr4 22813164 22813200 -161475462 + U2 snRNA snRNA 1 36 -152 391 333 98 0 chr4 22813250 22813373 -161475289 + L2 LINE L2 3134 3268 -4 528 297 26 31 chr4 22813654 22813846 -161474816 - MIR SINE MIR -57 205 15 223 295 114 9 chr4 22814381 22814486 -161474176 - MIR3 SINE MIR -11 197 82 325 334 91 85 chr4 22814571 22815217 -161473445 - L2 LINE L2 -8 3264 2609 263 353 60 37 chr4 22816435 22816735 -161471927 - L2 LINE L2 -2335 979 673 4395 180 15 15 chr4 22817088 22817951 -161470711 - MER6 DNA MER2_type -2 863 1 1398 250 32 20 chr4 22818000 22818408 -161470254 - LTR52 LTR ERVL -5 416 4 332 230 0 70 chr4 22819714 22819865 -161468797 + MIR SINE MIR 16 191 -71 202 361 67 0 chr4 22820572 22820691 -161467971 - L2 LINE L2 0 3272 3146 2202 170 73 25 chr4 22821000 22821038 -161467624 - MLT2A2 LTR ERVL 0 554 519 279 0 0 0 chr4 22821038 22821069 -161467593 + (TA)n Simple_repeat Simple_repeat 2 32 0 * 405 0 0 0 chr4 22821068 22821113 -161467549 + (CA)n Simple_repeat Simple_repeat 2 46 0 2202 170 73 25 chr4 22821069 22821583 -161467079 - MLT2A2 LTR ERVL -35 519 1 681 288 75 12 chr4 22821780 22822020 -161466642 + MIR SINE MIR 2 256 -6 1904 98 26 4 chr4 22822166 22822430 -161466232 - AluSp SINE Alu -30 283 14 191 302 47 66 chr4 22822552 22822658 -161466004 + MER5B DNA MER1_type 3 106 -72 21 0 0 0 chr4 22822852 22822873 -161465789 + AT_rich Low_complexity Low_complexity 1 21 0 536 341 45 8 chr4 22825352 22825598 -161463064 + MIR SINE MIR 7 261 -1 1906 127 3 48 chr4 22825768 22826083 -161462579 - AluSc SINE Alu -8 301 1 225 397 26 17 chr4 22826312 22826428 -161462234 - MIR SINE MIR -114 148 32 255 304 101 40 chr4 22827533 22827681 -161460981 + MIR3 SINE MIR 40 196 -12 3884 258 70 37 chr4 22827813 22829900 -161458762 - L1MB8 LINE L1 0 6178 3989 1918 114 34 20 chr4 22829900 22830198 -161458464 + AluSx SINE Alu 11 312 0 3884 258 70 37 chr4 22830198 22830708 -161457954 - L1MB8 LINE L1 -2189 3989 3497 587 163 10 0 chr4 22830998 22831096 -161457566 - Tigger1 DNA MER2_type 0 2418 2320 367 133 0 0 chr4 22831096 22831156 -161457506 - Tigger1 DNA MER2_type -246 2172 2113 10676 162 24 13 chr4 22831190 22833100 -161455562 - Tigger1 DNA MER2_type -486 1932 1 313 293 144 29 chr4 22833536 22833710 -161454952 + MLT1I LTR MaLR 93 286 -123 242 368 17 8 chr4 22834664 22834781 -161453881 + L2 LINE L2 3139 3256 -16 1615 187 21 9 chr4 22835252 22835578 -161453084 - L1MC1 LINE L1 0 6333 6004 4801 232 66 38 chr4 22835581 22838568 -161450094 - L1MD1 LINE L1 0 6242 3175 648 260 35 111 chr4 22838572 22838924 -161449738 - L1MC5 LINE L1 -922 7039 6728 2108 125 0 0 chr4 22838924 22839221 -161449441 + AluSc SINE Alu 6 302 -7 648 260 35 111 chr4 22839221 22839326 -161449336 - L1MC5 LINE L1 -1233 6728 6617 413 289 26 26 chr4 22839525 22839715 -161448947 - L1MC4 LINE L1 -155 7887 7698 246 62 0 0 chr4 22839715 22839747 -161448915 + (TA)n Simple_repeat Simple_repeat 2 33 0 205 296 29 93 chr4 22839888 22840060 -161448602 + L2 LINE L2 2325 2485 -829 2041 131 60 20 chr4 22840926 22841276 -161447386 - THE1B LTR MaLR 0 364 1 226 323 0 11 chr4 22841282 22841375 -161447287 + A-rich Low_complexity Low_complexity 2 93 0 180 316 95 11 chr4 22841777 22841872 -161446790 - L3 LINE CR1 -14 1563 1461 2555 247 110 52 chr4 22841898 22843514 -161445148 + L1MCb LINE L1 129 1954 -4610 1811 188 17 12 chr4 22843514 22843859 -161444803 + MER7A DNA MER2_type 2 346 0 2555 247 110 52 chr4 22843859 22844418 -161444244 + L1MCb LINE L1 1954 2479 -4085 652 292 12 0 chr4 22844452 22844620 -161444042 + MER58A DNA MER1_type 42 211 -13 1975 261 196 15 chr4 22844645 22845561 -161443101 - L1MC4 LINE L1 -303 7739 6658 21 36 0 0 chr4 22845632 22845660 -161443002 + AT_rich Low_complexity Low_complexity 1 28 0 255 267 85 34 chr4 22845661 22845798 -161442864 - L1MC4a LINE L1 -1215 6593 6537 524 150 0 10 chr4 22845815 22845915 -161442747 + (TG)n Simple_repeat Simple_repeat 2 100 0 507 240 12 18 chr4 22845920 22846091 -161442571 - L1MC4a LINE L1 -1294 6514 6345 820 268 63 26 chr4 22846124 22846475 -161442187 - L1ME2 LINE L1 -44 6120 5757 203 378 77 35 chr4 22849534 22849677 -161438985 + L2 LINE L2 3122 3270 -2 2731 13 0 0 chr4 22850202 22850505 -161438157 - AluYa5 SINE Alu -8 303 1 27 49 0 0 chr4 22850959 22851000 -161437662 + AT_rich Low_complexity Low_complexity 1 41 0 1187 199 109 55 chr4 22851148 22851605 -161437057 + LTR54B LTR ERV1 1 482 -16 410 304 47 26 chr4 22852895 22853086 -161435576 - L2 LINE L2 -2 3311 3117 351 261 65 11 chr4 22853321 22853413 -161435249 - MIR SINE MIR -77 185 89 3456 118 77 2 chr4 22853901 22854458 -161434204 + L1PA14 LINE L1 2258 2856 -4725 759 102 4 6 chr4 22854462 22854709 -161433953 + AluSx SINE Alu 4 299 -11 17005 197 16 14 chr4 22854714 22859442 -161429220 + L1PA14 LINE L1 2868 7599 0 25 51 0 0 chr4 22859442 22859481 -161429181 + AT_rich Low_complexity Low_complexity 1 39 0 1982 106 0 7 chr4 22859883 22860338 -161428324 - AluSc SINE Alu 0 453 1 26 0 0 0 chr4 22860396 22860422 -161428240 + AT_rich Low_complexity Low_complexity 1 26 0 313 287 23 23 chr4 22860767 22860854 -161427808 + L2 LINE L2 3170 3256 -16 294 345 18 30 chr4 22861135 22861300 -161427362 - MIR SINE MIR -75 187 25 198 321 90 8 chr4 22861846 22861980 -161426682 + MIR SINE MIR 118 262 0 220 374 10 10 chr4 22862017 22862116 -161426546 - MIR SINE MIR -110 152 54 203 272 256 24 chr4 22862349 22862474 -161426188 - MIR SINE MIR -2 260 107 21 36 0 0 chr4 22863026 22863054 -161425608 + AT_rich Low_complexity Low_complexity 1 28 0 387 379 59 12 chr4 22863553 22863722 -161424940 + MER91A DNA MER1_type 1 177 -19 1351 244 148 23 chr4 22863740 22864179 -161424483 - MLT1D LTR MaLR 0 505 12 237 65 0 0 chr4 22864644 22864675 -161423987 + (TTA)n Simple_repeat Simple_repeat 3 33 0 6728 61 8 6 chr4 22864675 22866320 -161422342 - L1PA7 LINE L1 -18 6136 4493 1673 180 131 13 chr4 22866519 22866902 -161421760 + MSTA LTR MaLR 1 428 0 251 161 128 0 chr4 22866911 22866973 -161421689 + AluS SINE Alu 1 57 -243 4553 163 28 9 chr4 22866975 22867766 -161420896 + MSTA-int LTR MaLR 775 1580 0 1921 162 126 5 chr4 22867766 22868148 -161420514 + MSTA LTR MaLR 1 428 0 258 364 23 0 chr4 22868325 22868413 -161420249 + L2 LINE L2 2573 2662 -652 278 386 52 0 chr4 22868831 22868984 -161419678 + L2 LINE L2 3136 3296 -17 578 308 7 0 chr4 22869035 22869181 -161419481 + MIR SINE MIR 10 156 -106 397 304 9 0 chr4 22869217 22869329 -161419333 + MLT1E LTR MaLR 51 163 -430 1707 253 31 46 chr4 22869330 22869346 -161419316 + MLT1E LTR MaLR 119 134 -459 2474 108 78 8 chr4 22869346 22869746 -161418916 + MSTA LTR MaLR 1 428 0 1707 253 31 46 chr4 22869746 22870208 -161418454 + MLT1E LTR MaLR 134 590 -3 231 288 30 0 chr4 22870217 22870283 -161418379 + MIR SINE MIR 157 224 -38 31 44 0 0 chr4 22870599 22870644 -161418018 + AT_rich Low_complexity Low_complexity 1 45 0 29 47 0 0 chr4 22871127 22871170 -161417492 + AT_rich Low_complexity Low_complexity 1 43 0 1964 130 20 0 chr4 22871507 22871807 -161416855 - AluSx SINE Alu 0 312 7 2295 201 10 0 chr4 22872645 22873052 -161415610 - MSTB LTR MaLR -13 413 3 1627 97 0 4 chr4 22873093 22873319 -161415343 + AluY SINE Alu 82 306 -5 242 289 10 10 chr4 22873892 22873989 -161414673 - MLT1J1 LTR MaLR -4 442 346 1868 152 3 14 chr4 22874040 22874337 -161414325 + AluJb SINE Alu 1 294 -18 1745 181 62 41 chr4 22875092 22875511 -161413151 - MLT2C2 LTR ERVL -32 432 5 296 323 79 8 chr4 22875531 22875658 -161413004 + MIR SINE MIR 104 239 -23 5108 180 26 8 chr4 22876495 22878199 -161410463 - L1PB4 LINE L1 -4 6152 4415 417 295 91 54 chr4 22878829 22879070 -161409592 - MIR SINE MIR 0 262 13 267 316 76 0 chr4 22879943 22880022 -161408640 + L2 LINE L2 3136 3220 -52 196 349 75 0 chr4 22880757 22880863 -161407799 + MIR SINE MIR 115 228 -34 227 255 0 0 chr4 22881517 22881568 -161407094 + (TG)n Simple_repeat Simple_repeat 1 51 0 2216 88 7 39 chr4 22882252 22882559 -161406103 - AluSg SINE Alu -13 297 1 382 289 72 48 chr4 22882579 22882828 -161405834 - L2 LINE L2 -74 3239 2985 697 271 201 23 chr4 22882867 22883442 -161405220 - L2 LINE L2 -240 3073 2401 401 159 28 19 chr4 22884003 22884110 -161404552 + GA-rich Low_complexity Low_complexity 2 109 0 1514 164 14 0 chr4 22884134 22884415 -161404247 + L1MA5 LINE L1 6010 6294 -6 266 216 155 0 chr4 22884439 22884536 -161404126 - MLT1L LTR MaLR -65 550 439 305 354 0 0 chr4 22884812 22884956 -161403706 - L1ME3A LINE L1 0 6170 6027 192 163 143 41 chr4 22885510 22885559 -161403103 + MIR SINE MIR 120 173 -89 344 355 41 17 chr4 22886239 22886411 -161402251 - MIR SINE MIR -81 181 6 198 103 0 0 chr4 22887791 22887820 -161400842 + (A)n Simple_repeat Simple_repeat 1 29 0 253 305 24 0 chr4 22887843 22887925 -161400737 + L2 LINE L2 3225 3308 -5 5323 142 58 45 chr4 22888575 22889106 -161399556 - Tigger3b DNA MER2_type -1797 1231 708 1715 170 10 3 chr4 22889106 22889400 -161399262 - AluJb SINE Alu -16 296 1 5323 142 58 45 chr4 22889400 22889944 -161398718 - Tigger3b DNA MER2_type -2320 708 142 276 285 106 22 chr4 22890233 22890412 -161398250 - MLT1H1 LTR MaLR 0 555 362 1114 252 78 20 chr4 22890533 22890603 -161398059 + MLT1A1 LTR MaLR 1 65 -300 1116 206 93 44 chr4 22890603 22890924 -161397738 - MER44D DNA MER2_type -2 607 1 1114 252 78 20 chr4 22890924 22891198 -161397464 + MLT1A1 LTR MaLR 65 365 0 268 292 33 58 chr4 22891237 22891357 -161397305 - MLT1H1 LTR MaLR -407 148 32 502 292 173 7 chr4 22891744 22892078 -161396584 - MLT1G1 LTR MaLR -1 594 176 2638 108 3 16 chr4 22892226 22892392 -161396270 - THE1B LTR MaLR 0 364 197 6473 112 41 17 chr4 22892392 22893438 -161395224 + MER11C LTR ERVK 1 1071 0 2638 108 3 16 chr4 22893438 22893640 -161395022 - THE1B LTR MaLR -167 197 1 276 354 15 8 chr4 22894407 22894537 -161394125 + MIR3 SINE MIR 77 207 -1 1747 179 0 29 chr4 22895262 22895570 -161393092 + AluJb SINE Alu 1 299 -13 23 0 0 0 chr4 22895962 22895985 -161392677 + AT_rich Low_complexity Low_complexity 1 23 0 1252 314 73 34 chr4 22896196 22896810 -161391852 + L1M2c LINE L1 797 1434 -6132 2711 78 3 8 chr4 22897059 22897416 -161391246 - THE1A LTR MaLR 0 355 1 10410 101 62 1 chr4 22897416 22898906 -161389756 - THE1A-int LTR MaLR 0 1580 1 2750 79 3 0 chr4 22898906 22899260 -161389402 - THE1A LTR MaLR 0 355 1 828 204 80 32 chr4 22899513 22899826 -161388836 + L1M2c LINE L1 2374 2701 -4865 186 43 0 0 chr4 22900154 22900177 -161388485 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3591 233 43 36 chr4 22900213 22900971 -161387691 + L1MA6 LINE L1 2427 3178 -4387 1602 145 69 4 chr4 22900971 22901233 -161387429 + AluSq SINE Alu 33 311 -2 3591 233 43 36 chr4 22901233 22902238 -161386424 + L1MA6 LINE L1 3178 4219 -3346 2228 78 4 0 chr4 22902238 22902568 -161386094 - AluY SINE Alu 0 331 1 3591 233 43 36 chr4 22902568 22903034 -161385628 + L1MA6 LINE L1 4219 4680 -2885 4113 181 86 11 chr4 22903037 22904588 -161384074 + L1MA6 LINE L1 5728 7393 -326 512 192 33 0 chr4 22904603 22904723 -161383939 + L1MA6 LINE L1 7593 7716 -3 192 143 0 0 chr4 22905212 22905254 -161383408 + (TC)n Simple_repeat Simple_repeat 2 43 0 201 226 97 0 chr4 22905463 22905525 -161383137 + MIR SINE MIR 81 148 -114 394 298 7 7 chr4 22905973 22906114 -161382548 - MARNA DNA Mariner -205 381 241 182 342 13 26 chr4 22907131 22907207 -161381455 - MIR SINE MIR -20 242 168 21 0 0 0 chr4 22907223 22907244 -161381418 + AT_rich Low_complexity Low_complexity 1 21 0 358 202 75 11 chr4 22907858 22907952 -161380710 + L1MC1 LINE L1 6234 6333 0 4438 219 16 20 chr4 22908005 22908049 -161380613 - L1 LINE L1 -871 5275 5232 2598 154 9 2 chr4 22908049 22908471 -161380191 + MSTA LTR MaLR 4 428 0 4438 219 16 20 chr4 22908471 22909581 -161379081 - L1 LINE L1 -914 5232 4125 4132 196 36 24 chr4 22909587 22910525 -161378137 + L1MA10 LINE L1 5282 6231 -103 469 282 79 26 chr4 22910524 22910751 -161377911 + L1MD1 LINE L1 5607 5845 -397 * 206 233 0 0 chr4 22910751 22910794 -161377868 + (AAATG)n Simple_repeat Simple_repeat 2 44 0 723 308 75 39 chr4 22911241 22911653 -161377009 - MLT1J2 LTR MaLR -22 428 2 255 329 0 13 chr4 22912881 22912957 -161375705 + MLT1K LTR MaLR 190 264 -324 495 73 0 0 chr4 22913221 22913289 -161375373 + (TG)n Simple_repeat Simple_repeat 1 68 0 332 268 24 16 chr4 22914496 22914619 -161374043 + (TA)n Simple_repeat Simple_repeat 2 125 0 340 143 18 0 chr4 22914749 22914805 -161373857 - Alu SINE Alu -11 291 235 191 319 167 29 chr4 22914865 22915003 -161373659 + MIR SINE MIR 60 216 -46 340 254 9 70 chr4 22915410 22915524 -161373138 - L2 LINE L2 -3 3310 3204 487 299 32 6 chr4 22915614 22915771 -161372891 - MER97c DNA MER1_type? -911 179 19 2596 225 8 8 chr4 22917290 22917938 -161370724 - L1MB7 LINE L1 -19 6165 5518 4825 213 39 71 chr4 22917947 22919901 -161368761 - L1MB7 LINE L1 -719 5459 3587 1381 229 44 7 chr4 22920161 22920616 -161368046 + L1M4 LINE L1 2791 3262 -2884 211 392 30 6 chr4 22921119 22921285 -161367377 + MIR SINE MIR 90 259 -3 998 198 0 34 chr4 22922050 22922257 -161366405 + MER3 DNA MER1_type 3 202 -7 11503 104 13 2 chr4 22922437 22922869 -161365793 + L1P LINE L1 3072 3498 -2648 216 0 0 0 chr4 22922869 22922893 -161365769 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 11503 104 13 2 chr4 22922893 22924195 -161364467 + L1P LINE L1 3498 4826 -1320 180 85 106 64 chr4 22924452 22924499 -161364163 - L3b LINE CR1 -330 1253 1205 522 214 71 0 chr4 22924513 22924639 -161364023 - MER5A DNA MER1_type -3 186 52 276 30 0 0 chr4 22924948 22924981 -161363681 + (TA)n Simple_repeat Simple_repeat 1 33 0 646 215 67 99 chr4 22925021 22925305 -161363357 - L1MC4 LINE L1 -365 7677 7403 2343 116 55 0 chr4 22925305 22925650 -161363012 + THE1B LTR MaLR 1 364 0 6899 130 104 1 chr4 22925650 22926770 -161361892 + THE1B-int LTR MaLR 1 1236 -344 2297 152 8 0 chr4 22926914 22927275 -161361387 + THE1B LTR MaLR 1 364 0 256 268 24 12 chr4 22927275 22927357 -161361305 - L1MC4 LINE L1 -635 7407 7325 23 54 0 0 chr4 22927824 22927861 -161360801 + AT_rich Low_complexity Low_complexity 1 37 0 364 316 21 0 chr4 22928050 22928145 -161360517 + MIR SINE MIR 50 146 -62 302 277 158 103 chr4 22929459 22929878 -161358784 + MLT1H LTR MaLR 1 442 -107 287 364 23 23 chr4 22930348 22930477 -161358185 - Charlie8 DNA MER1_type -2137 280 152 1597 296 57 29 chr4 22930846 22931407 -161357255 - MLT1E LTR MaLR -14 579 3 25 65 0 0 chr4 22933018 22933064 -161355598 + AT_rich Low_complexity Low_complexity 1 46 0 2859 150 11 0 chr4 22933447 22933893 -161354769 - MER41E LTR ERV1 -61 451 1 1127 196 0 10 chr4 22933976 22934175 -161354487 - MER4D LTR ERV1 -706 197 1 848 299 67 26 chr4 22934831 22935366 -161353296 + L1ME4a LINE L1 5328 5884 -237 1937 85 0 0 chr4 22935639 22935886 -161352776 + AluY SINE Alu 41 287 -24 710 58 101 5 chr4 22935886 22936433 -161352229 + (TA)n Simple_repeat Simple_repeat 1 599 0 195 100 0 0 chr4 22936765 22936795 -161351867 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 367 343 44 36 chr4 22936928 22937176 -161351486 + MIR SINE MIR 13 262 0 4613 181 31 31 chr4 22937916 22938563 -161350099 + L1MA10 LINE L1 5278 5930 -404 2056 120 0 7 chr4 22938563 22938892 -161349770 + AluSx SINE Alu 1 327 0 4613 181 31 31 chr4 22938892 22939288 -161349374 + L1MA10 LINE L1 5929 6324 -10 282 248 20 20 chr4 22939307 22939408 -161349254 + L1MB7 LINE L1 6073 6173 -11 216 292 0 0 chr4 22939432 22939480 -161349182 + L2 LINE L2 3185 3232 -40 2375 78 7 0 chr4 22939518 22939824 -161348838 - AluSg SINE Alu -2 308 1 377 385 39 0 chr4 22939872 22940028 -161348634 - MIR SINE MIR -89 173 12 230 102 34 17 chr4 22940478 22940537 -161348125 + LTR66 LTR ERVL 392 451 -159 192 40 0 0 chr4 22940561 22940586 -161348076 + (TG)n Simple_repeat Simple_repeat 2 26 0 2058 96 3 17 chr4 22940586 22940887 -161347775 - AluSp SINE Alu -16 297 1 1288 80 0 114 chr4 22941869 22942106 -161346556 + L1MA1 LINE L1 6089 6298 -4 23 0 0 0 chr4 22942413 22942436 -161346226 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr4 22942732 22942767 -161345895 + AT_rich Low_complexity Low_complexity 1 35 0 213 281 0 0 chr4 22943292 22943349 -161345313 + (CATA)n Simple_repeat Simple_repeat 4 60 0 873 276 14 5 chr4 22943673 22943894 -161344768 - L2 LINE L2 -534 2780 2558 351 324 108 32 chr4 22943974 22944289 -161344373 + L1ME4a LINE L1 3653 3991 -2155 1595 151 107 20 chr4 22944563 22944908 -161343754 - THE1C LTR MaLR 0 375 1 444 299 87 43 chr4 22945087 22945642 -161343020 + L1ME4a LINE L1 5525 6103 -18 2248 146 8 6 chr4 22946004 22946367 -161342295 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr4 22946423 22946444 -161342218 + AT_rich Low_complexity Low_complexity 1 21 0 195 100 0 0 chr4 22947002 22947032 -161341630 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 23 0 0 0 chr4 22947237 22947260 -161341402 + AT_rich Low_complexity Low_complexity 1 23 0 256 336 15 0 chr4 22948155 22948292 -161340370 + (TA)n Simple_repeat Simple_repeat 2 140 0 1781 204 44 3 chr4 22950471 22950838 -161337824 + MLT1B LTR MaLR 1 382 -8 6706 127 16 3 chr4 22951663 22952771 -161335891 - L1MA3 LINE L1 -8 6297 5175 2095 123 150 5 chr4 22952849 22953223 -161335439 + MSTA LTR MaLR 1 428 0 669 0 0 0 chr4 22953777 22953891 -161334771 + L1PA4 LINE L1 6063 6176 0 613 241 86 0 chr4 22953954 22954116 -161334546 - MIR SINE MIR -84 178 3 256 138 0 103 chr4 22954230 22954288 -161334374 - L2 LINE L2 0 3313 3262 531 102 0 0 chr4 22954902 22954990 -161333672 + (TG)n Simple_repeat Simple_repeat 1 88 0 227 209 0 0 chr4 22955196 22955239 -161333423 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 208 89 133 0 chr4 22956036 22956081 -161332581 + (TTCA)n Simple_repeat Simple_repeat 1 51 0 349 281 96 7 chr4 22956544 22956679 -161331983 - MIR SINE MIR -18 244 98 442 198 0 0 chr4 22957140 22957221 -161331441 - Charlie7 DNA MER1_type -862 1750 1670 22 0 0 0 chr4 22957459 22957481 -161331181 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr4 22957770 22957802 -161330860 + AT_rich Low_complexity Low_complexity 1 32 0 6351 86 11 2 chr4 22958134 22959912 -161328750 - L1PA10 LINE L1 -12 6156 4376 363 311 57 0 chr4 22959922 22960044 -161328618 + MIR SINE MIR 112 240 -22 22 0 0 0 chr4 22960050 22960072 -161328590 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr4 22960274 22960306 -161328356 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr4 22960966 22960990 -161327672 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 22961417 22961438 -161327224 + AT_rich Low_complexity Low_complexity 1 21 0 651 309 77 26 chr4 22961514 22961903 -161326759 + MLT1I LTR MaLR 1 409 0 377 322 93 37 chr4 22963501 22963715 -161324947 - LTR33 LTR ERVL -237 284 59 1686 108 29 0 chr4 22963841 22964081 -161324581 - AluSx SINE Alu -24 288 42 5764 66 0 4 chr4 22964081 22964811 -161323851 + LTR17 LTR ERV1 1 727 -53 256 187 32 5 chr4 22964811 22964886 -161323776 - Alu SINE Alu -257 45 1 300 269 54 11 chr4 22966013 22966106 -161322556 - L1MC4 LINE L1 -1330 6712 6616 286 333 16 8 chr4 22966273 22966399 -161322263 + MIR SINE MIR 120 246 -16 1572 218 77 48 chr4 22967606 22968124 -161320538 - LTR55 LTR ERV -10 538 6 1895 182 50 40 chr4 22969014 22969493 -161319169 + LTR2B LTR ERV1 7 490 0 197 231 0 183 chr4 22969954 22970058 -161318604 - L2 LINE L2 0 3313 3229 224 368 77 7 chr4 22970117 22970272 -161318390 - MIR3 SINE MIR -23 185 20 228 237 68 0 chr4 22970555 22970614 -161318048 - L2 LINE L2 -1 3271 3209 292 319 29 30 chr4 22972136 22972286 -161316376 - MIR SINE MIR -65 143 16 234 309 47 50 chr4 22972456 22972630 -161316032 + MIR SINE MIR 20 190 -67 22 0 0 0 chr4 22972752 22972774 -161315888 + AT_rich Low_complexity Low_complexity 1 22 0 40 21 0 0 chr4 22973231 22973278 -161315384 + AT_rich Low_complexity Low_complexity 1 47 0 209 348 101 14 chr4 22973339 22973477 -161315185 - L3 LINE CR1 -599 978 829 532 252 0 0 chr4 22973491 22973626 -161315036 - L1MA4 LINE L1 -11 6289 6155 537 183 9 0 chr4 22973627 22973742 -161314920 + L1MA4 LINE L1 6046 6161 -139 207 336 76 25 chr4 22974329 22974448 -161314214 + MIR3 SINE MIR 83 207 -1 347 338 82 21 chr4 22975611 22975951 -161312711 - L1MC4a LINE L1 -1937 5940 5580 227 266 63 13 chr4 22976153 22976232 -161312430 - MIR SINE MIR -98 164 82 681 393 33 24 chr4 22977518 22978065 -161310597 - MLT1K LTR MaLR 0 588 37 23 33 0 0 chr4 22979103 22979133 -161309529 + AT_rich Low_complexity Low_complexity 1 30 0 6552 77 0 12 chr4 22979698 22980777 -161307885 - L1PA7 LINE L1 0 6154 5067 427 148 0 0 chr4 22980778 22980839 -161307823 + 5S rRNA rRNA 32 92 -29 529 299 69 35 chr4 22980850 22981081 -161307581 - L1ME1 LINE L1 -19 6147 5909 897 234 40 45 chr4 22981224 22981578 -161307084 - L1MC4a LINE L1 -782 5433 5082 * 1509 247 90 66 chr4 22981564 22982409 -161306253 - L1MC4a LINE L1 -2923 3292 2428 1340 306 66 44 chr4 22982409 22983228 -161305434 - L1MC4a LINE L1 -5516 880 44 821 310 64 42 chr4 22983275 22983636 -161305026 - MLT1J2 LTR MaLR -33 417 49 1434 202 29 13 chr4 22983638 22984014 -161304648 - Charlie5 DNA MER1_type 0 2623 2242 393 216 57 0 chr4 22984028 22984116 -161304546 - Charlie5 DNA MER1_type -2507 105 13 834 261 11 70 chr4 22984128 22984485 -161304177 + MER58B DNA MER1_type 6 341 0 225 108 0 0 chr4 22986307 22986344 -161302318 + (TG)n Simple_repeat Simple_repeat 2 38 0 377 254 76 17 chr4 22986485 22986603 -161302059 - MER20B DNA MER1_type -594 189 65 198 0 0 0 chr4 22987914 22987936 -161300726 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 21 0 0 0 chr4 22987978 22987999 -161300663 + AT_rich Low_complexity Low_complexity 1 21 0 2130 92 16 0 chr4 22988001 22988307 -161300355 - L1PA13 LINE L1 -3 6160 5850 25 0 0 0 chr4 22988459 22988484 -161300178 + AT_rich Low_complexity Low_complexity 1 25 0 1026 117 17 22 chr4 22989006 22989185 -161299477 - L1PA11 LINE L1 -2 6172 5995 21 36 0 0 chr4 22989290 22989318 -161299344 + AT_rich Low_complexity Low_complexity 1 28 0 225 0 0 0 chr4 22989570 22989595 -161299067 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 2097 79 4 0 chr4 22991761 22992026 -161296636 + AluSg SINE Alu 13 278 -32 540 292 33 53 chr4 22992372 22992673 -161295989 + MLT1L LTR MaLR 321 615 0 304 379 35 6 chr4 22992715 22992889 -161295773 - MIR SINE MIR -48 214 36 270 81 0 0 chr4 22993294 22993331 -161295331 + (T)n Simple_repeat Simple_repeat 1 37 0 6585 11 0 3 chr4 22993334 22994083 -161294579 - L1HS LINE L1 0 6155 5409 337 217 14 0 chr4 22994300 22994369 -161294293 - L2 LINE L2 0 3313 3244 277 361 94 11 chr4 22995061 22995241 -161293421 - MIR SINE MIR -36 226 32 2213 119 0 0 chr4 22995494 22995797 -161292865 - AluSq SINE Alu -10 303 1 24 32 0 0 chr4 22996324 22996355 -161292307 + AT_rich Low_complexity Low_complexity 1 31 0 504 261 103 69 chr4 22996595 22996985 -161291677 - MLT1L LTR MaLR -19 596 194 369 62 0 0 chr4 22997304 22997352 -161291310 + (TG)n Simple_repeat Simple_repeat 1 48 0 481 299 7 21 chr4 22997359 22997503 -161291159 - MER58B DNA MER1_type -26 315 174 507 253 19 136 chr4 22997860 22997932 -161290730 + L2 LINE L2 3087 3166 -147 1904 145 23 54 chr4 22997932 22998319 -161290343 - THE1C LTR MaLR 0 375 1 507 253 19 136 chr4 22998319 22998503 -161290159 + L2 LINE L2 3166 3313 0 200 293 10 101 chr4 22998536 22998635 -161290027 - L3 LINE CR1 -1475 102 13 3868 87 9 9 chr4 22998730 22999292 -161289370 + L1MA1 LINE L1 5741 6302 0 35 24 0 0 chr4 22999327 22999369 -161289293 + AT_rich Low_complexity Low_complexity 1 42 0 1804 97 8 0 chr4 22999472 22999730 -161288932 + L1PA13 LINE L1 5895 6154 -9 205 352 14 14 chr4 22999735 22999806 -161288856 - L2 LINE L2 -9 3263 3193 30 69 0 0 chr4 22999841 22999899 -161288763 + AT_rich Low_complexity Low_complexity 1 58 0 305 206 0 128 chr4 22999960 23000062 -161288600 - L1MC4 LINE L1 -1340 6702 6614 28 0 0 0 chr4 23000109 23000137 -161288525 + AT_rich Low_complexity Low_complexity 1 28 0 501 195 0 0 chr4 23000507 23000584 -161288078 - MER2 DNA MER2_type 0 345 269 282 232 0 0 chr4 23001209 23001265 -161287397 - MIR SINE MIR -115 147 92 2069 88 3 61 chr4 23001356 23001684 -161286978 - AluSg SINE Alu -1 309 1 675 270 34 39 chr4 23002425 23002658 -161286004 + MIR SINE MIR 1 232 -30 202 322 44 11 chr4 23002761 23002851 -161285811 - MIR3 SINE MIR -10 198 106 361 247 24 102 chr4 23005279 23005445 -161283217 + MER21B LTR ERV1 1 153 -710 374 298 90 22 chr4 23005485 23005663 -161282999 + L1PA13 LINE L1 1069 1258 -5529 9158 196 17 59 chr4 23005666 23007786 -161280876 + L1PA13 LINE L1 1396 3602 -3195 489 37 0 98 chr4 23007786 23007815 -161280847 + MADE1 DNA Mariner 6 36 -44 2189 121 0 3 chr4 23007815 23008121 -161280541 - AluSq SINE Alu -8 305 1 489 37 0 98 chr4 23008121 23008173 -161280489 + MADE1 DNA Mariner 36 79 -1 9158 196 17 59 chr4 23008173 23008514 -161280148 + L1PA13 LINE L1 3602 3769 -3028 2153 105 7 0 chr4 23008514 23008808 -161279854 + AluSg SINE Alu 1 296 -14 9158 196 17 59 chr4 23008808 23009294 -161279368 + L1PA13 LINE L1 3769 4274 -2523 21 71 0 0 chr4 23009510 23009552 -161279110 + AT_rich Low_complexity Low_complexity 1 42 0 1745 161 73 14 chr4 23009912 23010266 -161278396 - THE1C LTR MaLR 0 375 1 2287 81 7 3 chr4 23010384 23010679 -161277983 - AluY SINE Alu -15 296 1 420 297 78 60 chr4 23011116 23011348 -161277314 - MIR SINE MIR -22 240 5 29 28 0 0 chr4 23011650 23011686 -161276976 + AT_rich Low_complexity Low_complexity 1 36 0 275 246 0 0 chr4 23011791 23011856 -161276806 + (TA)n Simple_repeat Simple_repeat 1 65 0 325 341 29 29 chr4 23011862 23012070 -161276592 - L1M4 LINE L1 -1313 4833 4626 202 436 39 8 chr4 23012520 23012777 -161275885 - L2 LINE L2 -154 3118 2854 2627 149 12 14 chr4 23012967 23013396 -161275266 - MSTA LTR MaLR 0 428 1 235 319 116 65 chr4 23013579 23013795 -161274867 - MLT1L LTR MaLR -371 244 18 222 338 150 10 chr4 23013824 23014031 -161274631 - L2 LINE L2 -1369 1945 1710 22 0 0 0 chr4 23014652 23014674 -161273988 + AT_rich Low_complexity Low_complexity 1 22 0 326 109 0 0 chr4 23014764 23014810 -161273852 - L1P LINE L1 -3282 2864 2819 926 100 87 0 chr4 23014831 23014981 -161273681 + L1P LINE L1 2871 3033 -3113 371 310 125 27 chr4 23115012 23115346 -161173316 - L2 LINE L2 -229 3084 2726 675 128 0 28 chr4 23116555 23116664 -161171998 - L1MD3 LINE L1 -28 7967 7862 1056 176 26 0 chr4 23116678 23116871 -161171791 - MLT2B1 LTR ERVL -322 198 1 16791 168 21 6 chr4 23116871 23119680 -161168982 - ERVL-B1 LTR ERVL -7 5757 2907 4849 201 26 21 chr4 23119684 23120203 -161168459 - ERVL-B1 LTR ERVL -3977 1787 1258 2385 63 0 7 chr4 23120203 23120532 -161168130 - AluY SINE Alu 0 327 1 4849 201 26 21 chr4 23120532 23121015 -161167647 - ERVL-B1 LTR ERVL -4506 1258 779 716 142 8 37 chr4 23121023 23121157 -161167505 - MLT2B1 LTR ERVL -389 131 2 1953 110 76 7 chr4 23121507 23121797 -161166865 + AluSx SINE Alu 1 310 -2 427 309 90 17 chr4 23122148 23122449 -161166213 + L1ME4a LINE L1 5531 5853 -268 267 31 0 0 chr4 23123242 23123274 -161165388 + (GA)n Simple_repeat Simple_repeat 1 32 0 1996 201 57 5 chr4 23123619 23124041 -161164621 - MLT1C LTR MaLR -2 465 22 895 299 129 27 chr4 23124098 23124540 -161164122 + MLT1K LTR MaLR 101 587 -1 685 295 44 1 chr4 23124652 23124884 -161163778 + MIR SINE MIR 22 260 -2 268 306 40 16 chr4 23124901 23125025 -161163637 - MIR SINE MIR -75 187 61 427 293 84 87 chr4 23125366 23125721 -161162941 - L2 LINE L2 0 3313 2960 2384 106 0 0 chr4 23126051 23126363 -161162299 + AluSx SINE Alu 1 312 0 287 362 29 7 chr4 23126937 23127075 -161161587 + L2 LINE L2 2941 3081 -191 731 244 77 24 chr4 23127270 23127516 -161161146 - MIR SINE MIR 0 262 4 330 230 0 14 chr4 23127573 23127647 -161161015 + L2 LINE L2 3240 3312 -1 513 275 70 20 chr4 23127781 23127981 -161160681 - MIR SINE MIR -2 260 51 2333 97 13 3 chr4 23128113 23128421 -161160241 + AluSq SINE Alu 1 311 -2 354 226 26 35 chr4 23128667 23128782 -161159880 - Charlie8 DNA MER1_type -2228 189 76 598 321 13 11 chr4 23129523 23129763 -161158899 + MIR SINE MIR 13 250 -12 2264 100 0 3 chr4 23129856 23130146 -161158516 - AluSg SINE Alu -15 295 7 1087 142 0 0 chr4 23130326 23130507 -161158155 - AluSg/x SINE Alu 0 309 129 2399 88 13 0 chr4 23130508 23130814 -161157848 - AluSg SINE Alu 0 310 1 514 293 81 22 chr4 23130828 23131050 -161157612 - MIR SINE MIR -18 244 10 180 200 0 0 chr4 23131225 23131265 -161157397 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 189 74 0 0 chr4 23131267 23131294 -161157368 + (TG)n Simple_repeat Simple_repeat 1 27 0 207 0 0 0 chr4 23132796 23132819 -161155843 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 934 55 0 0 chr4 23134032 23134141 -161154521 + THE1B LTR MaLR 1 109 -255 373 276 131 0 chr4 23135095 23135240 -161153422 + MIR SINE MIR 99 262 0 719 150 150 0 chr4 23135505 23135625 -161153037 - FRAM SINE Alu -19 157 20 22 0 0 0 chr4 23135826 23135848 -161152814 + AT_rich Low_complexity Low_complexity 1 22 0 387 171 73 0 chr4 23136034 23136116 -161152546 - Charlie8 DNA MER1_type -2141 276 189 735 223 13 46 chr4 23136215 23136414 -161152248 - MLT1A2 LTR MaLR -7 374 173 323 169 14 0 chr4 23136414 23136485 -161152177 + GA-rich Low_complexity Low_complexity 1 72 0 847 216 28 11 chr4 23136485 23136666 -161151996 - MLT1A2 LTR MaLR -187 187 4 327 340 82 19 chr4 23137372 23137578 -161151084 - MIR SINE MIR -11 251 33 254 335 103 46 chr4 23137604 23137798 -161150864 + L2 LINE L2 3044 3248 -24 752 266 15 5 chr4 23138134 23138337 -161150325 + MIR SINE MIR 18 222 -40 533 258 186 21 chr4 23140330 23140655 -161148007 + MLT1J2 LTR MaLR 77 450 0 193 29 59 0 chr4 23141097 23141131 -161147531 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 1381 139 0 10 chr4 23142272 23142480 -161146182 - MER1B DNA MER1_type 0 339 134 256 158 0 0 chr4 23142477 23142515 -161146147 - MER1B DNA MER1_type -299 38 1 * 200 274 0 32 chr4 23142523 23142585 -161146077 + MIR SINE MIR 165 224 -38 266 87 22 0 chr4 23143964 23144010 -161144652 + (TA)n Simple_repeat Simple_repeat 1 47 0 * 297 0 0 0 chr4 23144009 23144042 -161144620 + (TG)n Simple_repeat Simple_repeat 2 34 0 1922 132 45 3 chr4 23144376 23144663 -161143999 - AluSx SINE Alu -13 299 1 365 293 8 30 chr4 23144663 23144796 -161143866 + MIR SINE MIR 120 249 -13 2580 46 7 0 chr4 23145240 23145547 -161143115 - AluY SINE Alu -2 309 1 368 259 22 44 chr4 23145868 23146003 -161142659 + LTR67 LTR ERVL 426 557 0 204 309 69 117 chr4 23146940 23147231 -161141431 + L2 LINE L2 2930 3206 -66 2230 106 10 7 chr4 23147303 23147604 -161141058 + AluSx SINE Alu 1 302 -10 21 36 0 0 chr4 23148116 23148144 -161140518 + AT_rich Low_complexity Low_complexity 1 28 0 225 270 40 0 chr4 23148198 23148272 -161140390 - MER5A DNA MER1_type -59 130 54 22 56 0 0 chr4 23148284 23148320 -161140342 + AT_rich Low_complexity Low_complexity 1 36 0 1558 223 72 24 chr4 23148669 23149167 -161139495 - HsTC2 DNA Tc2 -103 1795 1274 34 24 0 0 chr4 23149357 23149398 -161139264 + AT_rich Low_complexity Low_complexity 1 41 0 824 211 71 11 chr4 23149504 23149736 -161138926 + L1MB7 LINE L1 5665 5916 -265 22 35 0 0 chr4 23149975 23150004 -161138658 + AT_rich Low_complexity Low_complexity 1 29 0 467 305 63 93 chr4 23150234 23150536 -161138126 - L3 LINE CR1 -111 1466 1174 287 282 49 55 chr4 23151042 23151205 -161137457 - L2 LINE L2 -21 3292 3131 287 245 0 0 chr4 23151205 23151285 -161137377 - MER63 DNA MER1_type -523 537 459 219 42 0 83 chr4 23151294 23151342 -161137320 + (TAAAAA)n Simple_repeat Simple_repeat 2 45 0 3552 193 51 24 chr4 23151462 23151715 -161136947 + MER63C DNA MER1_type 13 258 -802 2348 88 0 7 chr4 23151715 23152020 -161136642 + AluSx SINE Alu 1 303 -9 3552 193 51 24 chr4 23152020 23152550 -161136112 + MER63C DNA MER1_type 258 817 -113 2197 89 3 3 chr4 23152704 23153010 -161135652 + AluSq SINE Alu 1 306 0 443 290 15 8 chr4 23153206 23153337 -161135325 + MIR3 SINE MIR 70 201 -7 281 341 104 39 chr4 23153967 23154149 -161134513 + MIR SINE MIR 6 199 -63 557 227 24 134 chr4 23154354 23154601 -161134061 + MIR SINE MIR 21 240 -22 203 100 0 25 chr4 23154604 23154644 -161134018 + (CAT)n Simple_repeat Simple_repeat 3 41 0 479 226 0 6 chr4 23154660 23154841 -161133821 + (CAT)n Simple_repeat Simple_repeat 1 180 0 265 222 19 0 chr4 23155661 23155715 -161132947 + MER117 DNA MER1_type 1 55 -142 215 141 51 154 chr4 23155887 23155965 -161132697 + L2 LINE L2 2548 2617 -697 947 260 69 30 chr4 23156369 23156802 -161131860 - MLT1G1 LTR MaLR -83 512 1 302 313 68 45 chr4 23157015 23157191 -161131471 + MIR3 SINE MIR 20 199 -9 437 272 146 28 chr4 23157592 23157846 -161130816 - L2 LINE L2 -173 3140 2857 1852 139 0 26 chr4 23158368 23158677 -161129985 - AluSx SINE Alu -11 301 1 2282 96 3 3 chr4 23158695 23158996 -161129666 - AluSq SINE Alu -12 301 1 435 256 151 49 chr4 23159531 23159680 -161128982 - MLT1J2 LTR MaLR -80 366 234 2563 65 0 0 chr4 23159680 23159987 -161128675 + AluY SINE Alu 2 308 -3 435 256 151 49 chr4 23159987 23160142 -161128520 - MLT1J2 LTR MaLR -212 234 31 2354 112 3 0 chr4 23161046 23161358 -161127304 - AluSp SINE Alu 0 313 1 22 35 0 0 chr4 23161445 23161474 -161127188 + AT_rich Low_complexity Low_complexity 1 29 0 304 290 60 0 chr4 23161650 23161750 -161126912 - MIR SINE MIR -71 191 86 226 234 65 0 chr4 23161868 23161945 -161126717 - L2 LINE L2 -292 2980 2899 879 203 16 16 chr4 23162244 23162436 -161126226 + MER20 DNA MER1_type 28 219 0 262 297 20 74 chr4 23163040 23163188 -161125474 - MIR3 SINE MIR -11 197 58 266 319 102 56 chr4 23163548 23163957 -161124705 + L2 LINE L2 2791 3223 -49 * 587 315 25 68 chr4 23163924 23164018 -161124644 + L2 LINE L2 2934 3030 -283 1061 192 37 28 chr4 23164018 23164232 -161124430 + MER20 DNA MER1_type 2 217 -2 587 315 25 68 chr4 23164232 23164534 -161124128 + L2 LINE L2 3030 3313 0 182 254 200 0 chr4 23164813 23164868 -161123794 - MIR3 SINE MIR -28 180 115 271 290 14 0 chr4 23164915 23164984 -161123678 - MIR SINE MIR -106 102 33 365 204 51 71 chr4 23165264 23165362 -161123300 - L2 LINE L2 -41 3231 3136 649 270 71 22 chr4 23165516 23165742 -161122920 - MIR SINE MIR 0 262 26 540 245 117 0 chr4 23165838 23166001 -161122661 - MIR SINE MIR -14 248 67 1097 193 32 16 chr4 23166002 23166251 -161122411 - L1MB7 LINE L1 -244 5940 5688 545 318 10 16 chr4 23166339 23166531 -161122131 + MIR SINE MIR 13 203 -59 2309 92 3 7 chr4 23166908 23167213 -161121449 - AluSg SINE Alu -6 304 1 855 188 0 20 chr4 23167216 23167365 -161121297 + AluJo/FRAM SINE Alu 166 311 -1 3354 128 23 2 chr4 23167391 23167876 -161120786 + MER1A DNA MER1_type 32 526 -3 304 363 49 19 chr4 23167917 23168184 -161120478 - L1M4 LINE L1 -1083 5063 4789 573 258 35 76 chr4 23168185 23168499 -161120163 - L1ME4a LINE L1 -232 5889 5589 194 208 21 21 chr4 23168704 23168752 -161119910 - L2 LINE L2 0 3313 3266 1106 319 30 28 chr4 23169151 23169693 -161118969 - L2 LINE L2 -556 2758 2216 335 317 24 32 chr4 23170140 23170263 -161118399 - MIR SINE MIR -140 122 1 316 286 108 35 chr4 23170613 23170816 -161117846 + MIR SINE MIR 29 246 -16 213 288 144 0 chr4 23170990 23171101 -161117561 + MIR SINE MIR 121 247 -15 284 234 25 29 chr4 23171132 23171287 -161117375 + MIR SINE MIR 34 150 -112 2234 154 98 0 chr4 23171302 23171691 -161116971 + MSTB1 LTR MaLR 1 427 -5 329 300 57 44 chr4 23172989 23173216 -161115446 - MLT1H1 LTR MaLR -15 540 311 296 238 16 0 chr4 23173375 23173438 -161115224 - MLT1F LTR MaLR -459 83 20 223 377 150 0 chr4 23173484 23173651 -161115011 - MIR SINE MIR -13 249 58 278 303 197 19 chr4 23173949 23174157 -161114505 + MIR SINE MIR 10 254 -8 490 240 16 24 chr4 23174804 23174929 -161113733 - MER63 DNA MER1_type -85 751 2 2102 246 81 19 chr4 23175036 23175706 -161112956 + L1ME2 LINE L1 5447 6157 -7 346 294 55 0 chr4 23175783 23175892 -161112770 + MIR SINE MIR 37 151 -111 263 278 14 42 chr4 23175919 23175991 -161112671 - L2 LINE L2 -35 3237 3168 2247 99 0 0 chr4 23176003 23176296 -161112366 - AluSg SINE Alu -17 293 1 501 254 63 7 chr4 23176372 23176514 -161112148 - Charlie8 DNA MER1_type -2160 257 108 342 280 110 16 chr4 23176589 23176771 -161111891 - L2 LINE L2 0 3313 3115 2329 97 0 0 chr4 23177306 23177606 -161111056 + AluSc SINE Alu 5 304 -5 611 302 14 42 chr4 23178797 23179009 -161109653 + MIR SINE MIR 57 262 0 988 297 123 16 chr4 23179024 23179448 -161109214 - MLT1J LTR MaLR -4 507 39 867 288 115 39 chr4 23179561 23179943 -161108719 + L2 LINE L2 2535 2945 -369 317 243 75 26 chr4 23179966 23180082 -161108580 - MIR SINE MIR -87 121 3 2105 153 46 22 chr4 23180620 23180986 -161107676 - THE1C LTR MaLR 0 375 1 2237 102 3 22 chr4 23181005 23181318 -161107344 - AluSc SINE Alu -2 307 1 286 339 21 12 chr4 23181471 23181642 -161107020 - MIR SINE MIR -66 142 19 21 0 0 0 chr4 23181642 23181663 -161106999 + AT_rich Low_complexity Low_complexity 1 21 0 323 305 59 62 chr4 23181695 23182036 -161106626 - HAL1 LINE L1 -1532 975 636 227 282 0 42 chr4 23182183 23182254 -161106408 - HAL1 LINE L1 -2220 287 220 228 70 35 35 chr4 23185111 23185168 -161103494 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 27 62 0 0 chr4 23185285 23185333 -161103329 + AT_rich Low_complexity Low_complexity 1 48 0 320 285 73 8 chr4 23186398 23186521 -161102141 + L2 LINE L2 3141 3271 -1 287 268 143 0 chr4 23186747 23186859 -161101803 + MIR SINE MIR 135 262 0 246 62 0 0 chr4 23187068 23187100 -161101562 + (CA)n Simple_repeat Simple_repeat 1 32 0 218 191 16 63 chr4 23188033 23188096 -161100566 + MIR SINE MIR 87 146 -62 326 309 13 54 chr4 23188331 23188480 -161100182 + MIR SINE MIR 118 260 -2 2106 92 17 17 chr4 23188494 23188787 -161099875 + AluSx SINE Alu 1 293 -19 199 250 250 64 chr4 23189162 23189302 -161099360 - MIR SINE MIR -58 204 39 216 0 0 0 chr4 23189539 23189563 -161099099 + (T)n Simple_repeat Simple_repeat 1 24 0 2628 39 0 19 chr4 23189621 23189933 -161098729 + AluY SINE Alu 1 306 -5 635 276 183 29 chr4 23190650 23191027 -161097635 + L2 LINE L2 2879 3313 0 204 40 0 0 chr4 23191825 23191850 -161096812 + (T)n Simple_repeat Simple_repeat 1 25 0 371 244 166 67 chr4 23192116 23192183 -161096479 + MER112 DNA MER1_type 1 60 -200 315 0 0 0 chr4 23192183 23192218 -161096444 + (CA)n Simple_repeat Simple_repeat 2 36 0 371 244 166 67 chr4 23192218 23192343 -161096319 + MER112 DNA MER1_type 60 212 -48 195 342 25 13 chr4 23192361 23192440 -161096222 - MIR3 SINE MIR -45 163 84 225 256 77 26 chr4 23193194 23193272 -161095390 - L3 LINE CR1 -5 1572 1491 239 313 16 0 chr4 23194209 23194273 -161094389 + MIR SINE MIR 9 73 -189 287 209 75 0 chr4 23194303 23194370 -161094292 + MIR SINE MIR 166 237 -25 216 342 13 0 chr4 23194758 23194834 -161093828 + L2 LINE L2 3197 3273 -40 228 67 0 0 chr4 23194847 23194877 -161093785 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 2171 109 16 7 chr4 23195046 23195349 -161093313 - AluSx SINE Alu -5 307 2 1489 181 40 23 chr4 23195403 23195707 -161092955 + AluJo SINE Alu 1 309 -3 201 189 0 0 chr4 23196912 23196949 -161091713 + MIR SINE MIR 222 258 -4 22 0 0 0 chr4 23197214 23197236 -161091426 + AT_rich Low_complexity Low_complexity 1 22 0 457 225 0 0 chr4 23197341 23197421 -161091241 - Tigger3(Golem) DNA MER2_type -2949 80 1 188 344 94 23 chr4 23197433 23197561 -161091101 + MIR SINE MIR 16 152 -110 483 213 130 53 chr4 23197691 23197787 -161090875 + MIR SINE MIR 69 156 -106 2086 123 3 10 chr4 23197787 23198095 -161090567 - AluSx SINE Alu -6 306 1 483 213 130 53 chr4 23198095 23198167 -161090495 + MIR SINE MIR 156 250 -12 509 189 6 63 chr4 23198306 23198465 -161090197 + L2 LINE L2 3164 3313 0 2178 113 0 3 chr4 23200119 23200410 -161088252 - AluSx SINE Alu -20 292 3 276 372 33 0 chr4 23200451 23200572 -161088090 + L2 LINE L2 3143 3267 -5 432 271 13 46 chr4 23201256 23201407 -161087255 - L2 LINE L2 -7 3306 3161 299 288 27 55 chr4 23201850 23201996 -161086666 - L2 LINE L2 0 3313 3172 2500 55 0 3 chr4 23202298 23202608 -161086054 + AluY SINE Alu 1 309 -2 928 221 142 12 chr4 23202734 23203065 -161085597 - LTR37A LTR ERV1 0 426 53 994 167 5 21 chr4 23203324 23203516 -161085146 + MER53 DNA DNA 1 189 0 2265 82 0 20 chr4 23204120 23204425 -161084237 + AluSx SINE Alu 1 299 -13 210 37 0 0 chr4 23206147 23206174 -161082488 + (CAA)n Simple_repeat Simple_repeat 2 28 0 2243 106 0 0 chr4 23206174 23206476 -161082186 + AluSg SINE Alu 1 302 -8 340 211 105 0 chr4 23207192 23207268 -161081394 - MIR SINE MIR -25 237 154 285 192 0 0 chr4 23207800 23207852 -161080810 + MIR SINE MIR 50 101 -161 227 192 53 72 chr4 23208699 23208792 -161079870 - MIR SINE MIR -7 201 117 620 250 41 51 chr4 23209380 23209576 -161079086 + MIR SINE MIR 25 218 -44 236 219 110 27 chr4 23209603 23209676 -161078986 + MER116 DNA Mariner 1 79 -1 233 292 15 0 chr4 23209712 23209777 -161078885 + L2 LINE L2 3004 3069 -203 289 265 165 45 chr4 23209990 23210251 -161078411 - L2 LINE L2 -209 3063 2776 387 244 134 8 chr4 23210251 23210370 -161078292 + MER96 DNA MER1_type? 42 175 0 255 320 53 53 chr4 23210371 23210521 -161078141 - L2 LINE L2 -536 2778 2629 439 199 21 9 chr4 23210896 23210910 -161077752 + L1MC3 LINE L1 6619 6631 -1154 1606 164 29 4 chr4 23210910 23211205 -161077457 + AluJb SINE Alu 1 302 0 439 199 21 9 chr4 23211205 23211291 -161077371 + L1MC3 LINE L1 6631 6703 -1082 * 788 183 37 12 chr4 23211289 23211453 -161077209 + L1MC3 LINE L1 6918 7085 -700 281 161 125 40 chr4 23211453 23211550 -161077112 + MLT1F1 LTR MaLR 35 166 -383 2661 198 20 46 chr4 23211559 23211971 -161076691 + L1MC3 LINE L1 7197 7589 -196 1234 197 53 4 chr4 23211971 23212199 -161076463 + MER8 DNA MER2_type 1 239 0 2661 198 20 46 chr4 23212199 23212391 -161076271 + L1MC3 LINE L1 7589 7785 0 2325 110 0 0 chr4 23212652 23212951 -161075711 + AluSg SINE Alu 1 299 -11 482 291 0 0 chr4 23212951 23213078 -161075584 + MIR SINE MIR 80 206 -56 228 211 211 0 chr4 23213159 23213235 -161075427 - MIR SINE MIR -94 168 77 2033 58 0 16 chr4 23213737 23213995 -161074667 - AluY SINE Alu -1 310 57 415 288 131 6 chr4 23214236 23214396 -161074266 - MER91A DNA MER1_type -13 183 4 2344 196 69 42 chr4 23214874 23215380 -161073282 - MLT2B1 LTR ERVL 0 520 1 184 413 22 11 chr4 23215546 23215638 -161073024 - L2 LINE L2 -38 3234 3142 381 293 89 71 chr4 23215796 23216293 -161072369 - L2 LINE L2 -255 3058 2548 229 204 0 0 chr4 23216897 23216941 -161071721 + L2 LINE L2 3262 3305 -8 258 293 73 0 chr4 23217201 23217283 -161071379 + MIR SINE MIR 63 150 -112 918 198 0 6 chr4 23217601 23217768 -161070894 + FRAM SINE Alu 1 164 -12 2308 67 3 0 chr4 23219045 23219365 -161069297 - AluY SINE Alu 0 321 1 21 0 0 0 chr4 23219455 23219476 -161069186 + AT_rich Low_complexity Low_complexity 1 21 0 425 298 55 37 chr4 23219845 23220063 -161068599 + L3 LINE CR1 1248 1469 -108 480 326 136 41 chr4 23220090 23220925 -161067737 + L2 LINE L2 2362 3310 -3 448 343 49 25 chr4 23221714 23221918 -161066744 + MIR SINE MIR 27 235 -27 404 323 81 39 chr4 23222165 23222397 -161066265 - L2 LINE L2 -866 2448 2200 270 0 0 0 chr4 23222397 23222427 -161066235 + (TG)n Simple_repeat Simple_repeat 2 31 0 404 323 81 39 chr4 23222427 23222479 -161066183 - L2 LINE L2 -1114 2200 2152 561 267 59 21 chr4 23222533 23222720 -161065942 + MER63A DNA MER1_type 1 194 -16 1355 130 0 5 chr4 23222872 23223072 -161065590 + AluSg/x SINE Alu 110 308 -2 534 279 117 6 chr4 23223495 23223674 -161064988 + MIR SINE MIR 57 255 -7 25 31 0 0 chr4 23224589 23224621 -161064041 + AT_rich Low_complexity Low_complexity 1 32 0 4528 211 15 25 chr4 23224624 23225727 -161062935 + L1MA9 LINE L1 5184 6274 -38 21 82 0 0 chr4 23225736 23225785 -161062877 + AT_rich Low_complexity Low_complexity 1 49 0 297 0 0 0 chr4 23225954 23225987 -161062675 + (CA)n Simple_repeat Simple_repeat 2 34 0 228 128 77 0 chr4 23226114 23226192 -161062470 + (TA)n Simple_repeat Simple_repeat 1 84 0 310 183 131 58 chr4 23226404 23226541 -161062121 + L1ME LINE L1 5266 5412 -750 4181 193 95 18 chr4 23226563 23227647 -161061015 + Charlie1 DNA MER1_type 39 2507 -254 268 179 60 15 chr4 23227648 23227715 -161060947 + Charlie1 DNA MER1_type 2683 2752 -9 415 277 49 37 chr4 23227724 23227899 -161060763 + L1ME LINE L1 5408 5587 -591 582 256 54 36 chr4 23227907 23228075 -161060587 - MER58B DNA MER1_type 0 341 171 280 308 51 0 chr4 23228967 23229045 -161059617 - MIR SINE MIR -70 192 111 251 176 111 65 chr4 23229060 23229168 -161059494 + MIR3 SINE MIR 4 116 -92 23 54 0 0 chr4 23229251 23229288 -161059374 + AT_rich Low_complexity Low_complexity 1 37 0 730 270 87 93 chr4 23230174 23230659 -161058003 + L2 LINE L2 2832 3313 0 2173 112 0 3 chr4 23230727 23231022 -161057640 + AluSg SINE Alu 2 295 -15 196 191 270 0 chr4 23231037 23231100 -161057562 - L2 LINE L2 0 3313 3234 1395 186 192 6 chr4 23231345 23231689 -161056973 - MLT1C LTR MaLR -7 460 53 183 406 10 10 chr4 23232451 23232552 -161056110 + MIR SINE MIR 13 113 -149 207 309 128 38 chr4 23232839 23232896 -161055766 + L2 LINE L2 3024 3074 -239 2210 124 0 0 chr4 23232896 23233202 -161055460 + AluSx SINE Alu 1 306 -6 207 309 128 38 chr4 23233202 23233409 -161055253 + L2 LINE L2 3074 3312 -1 248 273 61 10 chr4 23233780 23233879 -161054783 - L3 LINE CR1 -294 1283 1180 264 346 0 0 chr4 23234486 23234564 -161054098 - MIR3 SINE MIR -17 191 114 * 461 240 32 55 chr4 23234555 23234722 -161053940 + MIR SINE MIR 44 212 -43 278 347 113 16 chr4 23234769 23234893 -161053769 - L2 LINE L2 -10 3262 3127 669 266 33 16 chr4 23235577 23235761 -161052901 - MIR SINE MIR -7 255 69 932 286 65 17 chr4 23236032 23236716 -161051946 + L2 LINE L2 2548 3311 -2 244 196 89 0 chr4 23236713 23236769 -161051893 + MIR SINE MIR 114 174 -88 * 587 216 22 8 chr4 23236832 23236966 -161051696 - MIR SINE MIR -48 214 79 380 278 176 0 chr4 23237756 23237943 -161050719 - MIR SINE MIR -11 251 32 194 304 101 0 chr4 23238504 23238573 -161050089 - L2 LINE L2 -16 3297 3222 415 252 36 36 chr4 23238575 23238714 -161049948 - MIR SINE MIR -1 261 123 185 0 0 39 chr4 23239044 23239070 -161049592 + (TCTCC)n Simple_repeat Simple_repeat 5 29 0 180 0 0 0 chr4 23239112 23239132 -161049530 + (CCTG)n Simple_repeat Simple_repeat 2 21 0 324 70 0 0 chr4 23239740 23239783 -161048879 + (TA)n Simple_repeat Simple_repeat 2 44 0 186 43 0 0 chr4 23242201 23242224 -161046438 + (T)n Simple_repeat Simple_repeat 1 23 0 200 241 17 69 chr4 23242490 23242548 -161046114 + L2 LINE L2 3249 3303 -10 21 0 0 0 chr4 23244924 23244945 -161043717 + AT_rich Low_complexity Low_complexity 1 21 0 214 383 70 31 chr4 23245029 23245157 -161043505 - L2 LINE L2 -43 3229 3097 385 312 5 48 chr4 23245232 23245418 -161043244 - MIR SINE MIR -10 252 75 2351 105 0 0 chr4 23245740 23246045 -161042617 + AluSg SINE Alu 4 308 -2 27 29 0 0 chr4 23246118 23246152 -161042510 + AT_rich Low_complexity Low_complexity 1 34 0 508 353 107 0 chr4 23246930 23247256 -161041406 + L2 LINE L2 2586 2946 -368 477 246 160 43 chr4 23247441 23247697 -161040965 + L2 LINE L2 3027 3312 -1 273 98 0 0 chr4 23248220 23248261 -161040401 + (TG)n Simple_repeat Simple_repeat 1 41 0 180 0 0 0 chr4 23248260 23248280 -161040382 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 325 322 29 1 chr4 23248420 23248523 -161040139 + MIR SINE MIR 31 132 -76 22 0 0 0 chr4 23249557 23249579 -161039083 + AT_rich Low_complexity Low_complexity 1 22 0 306 265 71 10 chr4 23249954 23250052 -161038610 - MIR3 SINE MIR -8 200 97 201 121 0 0 chr4 23250089 23250122 -161038540 + (T)n Simple_repeat Simple_repeat 1 33 0 2606 52 0 3 chr4 23250282 23250590 -161038072 - AluY SINE Alu -4 307 1 319 277 82 25 chr4 23250850 23251009 -161037653 - L1ME4a LINE L1 -157 5964 5797 1495 173 33 43 chr4 23251095 23251395 -161037267 - AluJb SINE Alu -3 309 13 1248 173 26 68 chr4 23251992 23252258 -161036404 - AluJb SINE Alu -11 301 47 478 301 96 13 chr4 23252359 23252588 -161036074 + MIR SINE MIR 6 253 -9 199 293 24 49 chr4 23252717 23252799 -161035863 - L2 LINE L2 -258 3014 2935 665 253 13 7 chr4 23252994 23253148 -161035514 + MIR SINE MIR 100 254 -8 189 74 0 0 chr4 23253180 23253207 -161035455 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 270 360 0 0 chr4 23255129 23255215 -161033447 - L2 LINE L2 -85 3187 3102 200 283 0 0 chr4 23255274 23255320 -161033342 + (CA)n Simple_repeat Simple_repeat 2 47 0 464 330 58 9 chr4 23255908 23256153 -161032509 - MIR SINE MIR -10 252 3 241 150 0 0 chr4 23256166 23256206 -161032456 - MIR SINE MIR -118 144 105 446 154 0 0 chr4 23256470 23256535 -161032127 - AluJb SINE Alu -247 65 1 237 378 35 35 chr4 23256791 23256963 -161031699 + L2 LINE L2 3092 3263 -9 609 236 40 40 chr4 23257450 23257624 -161031038 - MIR SINE MIR 0 262 89 836 262 87 88 chr4 23257712 23258266 -161030396 - MLT1H1 LTR MaLR -2 553 1 2933 111 7 70 chr4 23308388 23308460 -160980202 - L1PA8A LINE L1 -579 5552 5477 2716 26 0 0 chr4 23308460 23308765 -160979897 - AluYa5 SINE Alu -6 305 1 2933 111 7 70 chr4 23308765 23309417 -160979245 - L1PA8A LINE L1 -654 5477 4860 492 18 0 0 chr4 23310153 23310210 -160978452 + (TG)n Simple_repeat Simple_repeat 1 57 0 201 176 274 29 chr4 23310237 23310339 -160978323 + MIR3 SINE MIR 15 141 -67 2026 115 3 30 chr4 23310843 23311148 -160977514 + AluSx SINE Alu 1 297 -15 22 80 0 0 chr4 23312186 23312236 -160976426 + AT_rich Low_complexity Low_complexity 1 50 0 498 316 47 0 chr4 23312392 23312582 -160976080 - MIR SINE MIR -61 201 3 372 293 45 25 chr4 23313764 23313921 -160974741 + L1MD2 LINE L1 5462 5621 -2187 336 327 65 39 chr4 23313929 23314189 -160974473 + L1MD2 LINE L1 5725 5991 -368 312 263 73 22 chr4 23314325 23314462 -160974200 - MLT1J2 LTR MaLR -51 399 256 207 69 0 0 chr4 23315727 23315756 -160972906 + (TA)n Simple_repeat Simple_repeat 2 30 0 1501 184 62 7 chr4 23316122 23316410 -160972252 + AluJo SINE Alu 1 304 -8 491 359 97 4 chr4 23317037 23317296 -160971366 + L3 LINE CR1 547 829 -748 253 311 0 0 chr4 23317454 23317515 -160971147 + L2 LINE L2 3160 3220 -52 568 317 48 63 chr4 23317641 23318106 -160970556 + L2 LINE L2 2682 3147 -166 24 32 0 0 chr4 23318242 23318273 -160970389 + AT_rich Low_complexity Low_complexity 1 31 0 2260 108 7 0 chr4 23319112 23319452 -160969210 + AluSc SINE Alu 1 342 0 245 298 61 26 chr4 23319475 23319589 -160969073 - L2 LINE L2 -5 3308 3191 197 259 62 49 chr4 23320129 23320210 -160968452 + L2 LINE L2 3187 3268 -4 219 336 25 25 chr4 23320231 23320350 -160968312 + L3 LINE CR1 1333 1451 -126 331 247 0 43 chr4 23321733 23321826 -160966836 - L1MC4 LINE L1 -1340 6702 6614 330 153 0 0 chr4 23321832 23321891 -160966771 + (TA)n Simple_repeat Simple_repeat 1 59 0 1817 154 42 0 chr4 23321891 23322177 -160966485 - AluSx SINE Alu -14 298 1 201 259 0 0 chr4 23322428 23322482 -160966180 + CT-rich Low_complexity Low_complexity 3 56 0 241 278 0 0 chr4 23323066 23323120 -160965542 + CT-rich Low_complexity Low_complexity 1 54 0 406 306 77 21 chr4 23323604 23324074 -160964588 - L1ME4a LINE L1 -23 6098 5603 997 176 0 0 chr4 23324088 23324253 -160964409 + FRAM SINE Alu 1 164 -12 193 346 105 15 chr4 23324782 23324915 -160963747 - MIR3 SINE MIR -23 185 41 981 211 143 63 chr4 23325522 23325934 -160962728 - L1MD3 LINE L1 -167 7828 7384 251 159 29 43 chr4 23325949 23326018 -160962644 - MLT1F1 LTR MaLR -448 119 52 2435 91 0 0 chr4 23326473 23326781 -160961881 + AluSq SINE Alu 1 308 -5 201 175 0 0 chr4 23327120 23327160 -160961502 + (TTCA)n Simple_repeat Simple_repeat 3 42 0 339 321 30 8 chr4 23327294 23327425 -160961237 - MIR SINE MIR -12 250 117 330 217 0 0 chr4 23329756 23329825 -160958837 - MLT1A2 LTR MaLR 0 374 306 401 319 29 67 chr4 23330246 23330484 -160958178 - MIR SINE MIR -1 261 33 285 236 0 154 chr4 23330492 23330602 -160958060 - MER91B DNA MER1_type -10 180 88 433 200 59 0 chr4 23330620 23330705 -160957957 - MER91B DNA MER1_type -61 129 40 182 340 0 0 chr4 23330954 23331001 -160957661 - L2 LINE L2 -82 3190 3144 2142 179 65 7 chr4 23331953 23332356 -160956306 + MSTB LTR MaLR 1 426 0 811 301 4 4 chr4 23332963 23333192 -160955470 + MIR SINE MIR 34 262 0 2027 125 7 0 chr4 23333978 23334259 -160954403 + AluSp SINE Alu 3 285 -28 21 0 0 0 chr4 23334780 23334801 -160953861 + AT_rich Low_complexity Low_complexity 1 21 0 331 347 41 34 chr4 23334917 23335064 -160953598 + L2 LINE L2 3125 3272 0 721 256 30 47 chr4 23335612 23335846 -160952816 - MIR SINE MIR -12 250 21 264 292 158 33 chr4 23336043 23336283 -160952379 + L2 LINE L2 3044 3313 0 216 0 0 0 chr4 23336411 23336435 -160952227 + (A)n Simple_repeat Simple_repeat 1 24 0 2272 118 0 13 chr4 23336699 23337005 -160951657 + AluSx SINE Alu 1 302 -10 380 276 0 86 chr4 23338674 23338837 -160949825 + MIR SINE MIR 25 173 -89 221 258 15 0 chr4 23338887 23338953 -160949709 + (TGAA)n Simple_repeat Simple_repeat 2 68 0 201 305 23 62 chr4 23339280 23339408 -160949254 + L3b LINE CR1 1295 1417 -166 352 194 0 0 chr4 23339543 23339605 -160949057 - Alu SINE Alu 0 302 241 191 203 68 51 chr4 23339738 23339797 -160948865 - L2 LINE L2 0 3272 3213 527 197 16 25 chr4 23340740 23340862 -160947800 - MER53 DNA DNA -68 121 1 218 356 48 19 chr4 23341138 23341242 -160947420 - L2 LINE L2 -38 3234 3128 997 181 62 0 chr4 23341305 23341515 -160947147 + L1MA9 LINE L1 6058 6280 -32 2147 101 51 3 chr4 23341942 23342238 -160946424 - AluSg SINE Alu 0 310 1 201 339 122 17 chr4 23342487 23342602 -160946060 - L2 LINE L2 0 3272 3146 2042 134 0 0 chr4 23344734 23345026 -160943636 - AluSx SINE Alu -20 292 1 242 277 109 20 chr4 23345348 23345449 -160943213 + L2 LINE L2 3155 3264 -8 425 329 108 18 chr4 23346398 23346620 -160942042 + MIR SINE MIR 20 261 -1 264 358 0 0 chr4 23346669 23346736 -160941926 - MIR SINE MIR -105 103 37 2423 78 0 7 chr4 23346755 23347063 -160941599 + AluY SINE Alu 1 306 -5 2112 121 0 0 chr4 23347074 23347384 -160941278 + AluSx SINE Alu 1 310 0 1842 240 150 21 chr4 23347603 23348178 -160940484 - MLT1E1 LTR MaLR -4 650 2 494 232 46 46 chr4 23348315 23348466 -160940196 - L2 LINE L2 0 3313 3163 294 238 159 24 chr4 23352268 23352394 -160936268 - L2 LINE L2 -12 3301 3159 336 253 0 0 chr4 23352586 23352661 -160936001 - MIR SINE MIR -10 252 178 363 297 51 7 chr4 23352689 23352827 -160935835 + L2 LINE L2 3170 3313 0 333 305 13 58 chr4 23352838 23352995 -160935667 - MIR SINE MIR -63 145 2 304 299 19 78 chr4 23353209 23353363 -160935299 + MIR SINE MIR 67 211 -51 920 128 0 8 chr4 23353542 23353675 -160934987 + AluSx SINE Alu 1 132 -180 1107 137 0 23 chr4 23353712 23353887 -160934775 + AluSx SINE Alu 120 290 -20 2479 82 99 6 chr4 23354065 23354408 -160934254 - THE1C LTR MaLR 0 375 1 405 0 0 0 chr4 23354755 23354800 -160933862 + (CA)n Simple_repeat Simple_repeat 1 45 0 345 47 0 0 chr4 23355115 23355158 -160933504 + (CA)n Simple_repeat Simple_repeat 2 44 0 251 235 130 7 chr4 23355358 23355476 -160933186 - MIR SINE MIR -46 216 2 380 264 245 6 chr4 23355492 23355651 -160933011 + MIR SINE MIR 66 262 0 21 36 0 0 chr4 23357660 23357688 -160930974 + AT_rich Low_complexity Low_complexity 1 28 0 253 266 0 43 chr4 23358053 23358147 -160930515 - L1MC4 LINE L1 -1339 6703 6614 333 0 0 0 chr4 23358150 23358187 -160930475 + (TG)n Simple_repeat Simple_repeat 2 38 0 2273 96 14 0 chr4 23358192 23358483 -160930179 - AluSx SINE Alu -17 295 1 411 320 36 32 chr4 23358491 23358741 -160929921 - L1MC4 LINE L1 -360 5810 5589 21 0 0 0 chr4 23359875 23359896 -160928766 + AT_rich Low_complexity Low_complexity 1 21 0 799 296 4 4 chr4 23360422 23360648 -160928014 - MIR SINE MIR 0 262 37 2343 90 3 6 chr4 23360967 23361279 -160927383 - AluSq SINE Alu -2 311 1 228 275 175 50 chr4 23361646 23361886 -160926776 + L2 LINE L2 3044 3313 0 225 0 0 0 chr4 23362014 23362039 -160926623 + (A)n Simple_repeat Simple_repeat 1 25 0 317 285 31 39 chr4 23363075 23363207 -160925455 + MIR3 SINE MIR 49 181 -27 280 302 12 0 chr4 23363906 23363992 -160924670 - MER117 DNA MER1_type -106 91 5 7814 92 4 29 chr4 23364040 23365900 -160922762 - L1PA7 LINE L1 0 6154 4316 5999 44 0 1 chr4 23365900 23366574 -160922088 - L1PA6 LINE L1 -5 6149 5472 27118 114 51 7 chr4 23366576 23370704 -160917958 - L1PA7 LINE L1 -1823 4323 11 673 252 1 36 chr4 23371486 23371691 -160916971 - MLT1E LTR MaLR -359 196 1 341 311 1 23 chr4 23371695 23371807 -160916855 + MIR SINE MIR 56 165 -43 198 103 0 0 chr4 23371833 23371862 -160916800 + (ATG)n Simple_repeat Simple_repeat 2 30 0 516 245 77 0 chr4 23372548 23372691 -160915971 - MIR SINE MIR -38 224 71 349 264 62 23 chr4 23373143 23373272 -160915390 + MIR SINE MIR 75 208 -54 399 260 114 8 chr4 23373788 23373911 -160914751 - L2 LINE L2 0 3313 3178 369 338 14 7 chr4 23374214 23374359 -160914303 - L2 LINE L2 -447 2867 2722 326 331 31 0 chr4 23374740 23374870 -160913792 + MIR SINE MIR 103 236 -26 199 54 54 0 chr4 23374889 23374926 -160913736 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 905 138 0 0 chr4 23374948 23375078 -160913584 + FLAM_C SINE Alu 6 135 -8 336 278 75 29 chr4 23375098 23375271 -160913391 - L1MA9 LINE L1 -48 6264 6084 213 39 0 0 chr4 23375552 23375578 -160913084 + (TG)n Simple_repeat Simple_repeat 2 27 0 2115 106 3 0 chr4 23375706 23376024 -160912638 - AluSx SINE Alu 0 319 1 417 274 53 0 chr4 23376195 23376308 -160912354 - L2 LINE L2 -5 3308 3190 194 250 105 13 chr4 23376696 23376772 -160911890 + L2 LINE L2 2708 2790 -524 209 191 0 21 chr4 23376984 23377031 -160911631 - L2 LINE L2 0 3313 3268 453 83 125 14 chr4 23377305 23377377 -160911285 + MADE1 DNA Mariner 1 80 0 1574 195 7 24 chr4 23377485 23377783 -160910879 + AluJo SINE Alu 5 297 -15 368 367 8 0 chr4 23379149 23379269 -160909393 - L2 LINE L2 -40 3232 3112 2287 122 91 49 chr4 23380189 23380598 -160908064 - MSTA LTR MaLR -2 426 1 227 167 42 0 chr4 23380764 23380812 -160907850 + L1MC4 LINE L1 6654 6703 -1339 232 233 0 0 chr4 23380814 23380857 -160907805 + (CA)n Simple_repeat Simple_repeat 2 44 0 329 343 32 95 chr4 23380858 23381019 -160907643 - L2 LINE L2 0 3272 3103 345 244 89 44 chr4 23381019 23381199 -160907463 + MER5A DNA MER1_type 2 189 0 329 343 32 95 chr4 23381199 23381407 -160907255 - L2 LINE L2 -169 3103 2926 26 0 0 0 chr4 23383021 23383047 -160905615 + AT_rich Low_complexity Low_complexity 1 26 0 389 261 149 27 chr4 23383090 23383278 -160905384 - L2 LINE L2 0 3313 3103 612 289 15 5 chr4 23383299 23383500 -160905162 - MIR SINE MIR -50 212 10 22 0 0 0 chr4 23383573 23383595 -160905067 + AT_rich Low_complexity Low_complexity 1 22 0 26546 129 14 28 chr4 23383598 23384247 -160904415 - L1PA8A LINE L1 -4 6442 5786 2846 10 0 0 chr4 23384247 23384551 -160904111 - AluYa5 SINE Alu -7 304 1 26546 129 14 28 chr4 23384551 23390394 -160898268 - L1PA8A LINE L1 -660 5786 1 198 0 0 0 chr4 23391111 23391133 -160897529 + (T)n Simple_repeat Simple_repeat 1 22 0 183 338 142 20 chr4 23391505 23391653 -160897009 - L2 LINE L2 0 3272 3107 604 314 16 0 chr4 23391702 23391890 -160896772 - MIR SINE MIR -21 241 51 21 0 0 0 chr4 23393895 23393916 -160894746 + AT_rich Low_complexity Low_complexity 1 21 0 2082 215 60 14 chr4 23394600 23395083 -160893579 + MLT1D LTR MaLR 1 505 0 302 266 0 0 chr4 23395223 23395287 -160893375 - MLT1K LTR MaLR 0 588 525 198 103 0 0 chr4 23395290 23395319 -160893343 + (A)n Simple_repeat Simple_repeat 1 29 0 998 265 57 60 chr4 23395562 23396067 -160892595 - MLT1G1 LTR MaLR -5 590 45 21 36 0 0 chr4 23397083 23397111 -160891551 + AT_rich Low_complexity Low_complexity 1 28 0 183 204 0 0 chr4 23400669 23400718 -160887944 + T-rich Low_complexity Low_complexity 1 49 0 210 37 0 0 chr4 23401651 23401678 -160886984 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 408 40 0 0 chr4 23401677 23401727 -160886935 + (TA)n Simple_repeat Simple_repeat 1 50 0 2826 10 0 3 chr4 23402799 23403109 -160885553 + AluYb8 SINE Alu 1 309 -9 322 335 139 6 chr4 23403276 23403434 -160885228 + MIR SINE MIR 8 186 -76 333 269 0 37 chr4 23403948 23404056 -160884606 + MLT1H LTR MaLR 59 162 -387 2981 180 63 12 chr4 23404407 23404996 -160883666 + L1MB8 LINE L1 5551 6169 -9 258 314 153 16 chr4 23405544 23405668 -160882994 + L2 LINE L2 3127 3267 -5 243 311 61 44 chr4 23405678 23405832 -160882830 - MIR SINE MIR -60 148 35 230 0 0 32 chr4 23406943 23406974 -160881688 + (GA)n Simple_repeat Simple_repeat 1 30 0 446 200 285 38 chr4 23407117 23407288 -160881374 + MIR SINE MIR 34 245 -17 859 271 20 24 chr4 23407644 23407891 -160880771 + MIR SINE MIR 17 262 0 210 329 14 0 chr4 23407937 23408007 -160880655 - L2 LINE L2 -1 3312 3242 1581 194 18 0 chr4 23409503 23409786 -160878876 - AluJo SINE Alu -19 293 6 2585 50 0 3 chr4 23413441 23413744 -160874918 - AluY SINE Alu -9 302 1 2861 214 59 24 chr4 23413970 23414733 -160873929 + Charlie5 DNA MER1_type 1 790 -1822 378 185 0 0 chr4 23414762 23414827 -160873835 + Charlie5 DNA MER1_type 2519 2583 -29 769 321 138 18 chr4 23414898 23415281 -160873381 + L2 LINE L2 2548 2976 -338 610 242 45 22 chr4 23416066 23416244 -160872418 - Charlie8 DNA MER1_type -2233 184 3 413 299 43 6 chr4 23416266 23416430 -160872232 - MIR SINE MIR -6 256 87 219 114 0 0 chr4 23416523 23416558 -160872104 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 244 230 0 60 chr4 23417137 23417237 -160871425 + L1MC4 LINE L1 6610 6703 -1339 578 189 45 0 chr4 23417524 23417635 -160871027 + MER20 DNA MER1_type 1 116 -103 190 288 14 129 chr4 23417851 23417990 -160870672 + MIR SINE MIR 75 197 -65 201 133 0 0 chr4 23418013 23418043 -160870619 + (CCA)n Simple_repeat Simple_repeat 2 31 0 371 276 0 0 chr4 23418091 23418178 -160870484 - L2 LINE L2 0 3272 3186 877 196 103 14 chr4 23418925 23419139 -160869523 + MIR SINE MIR 9 241 -21 230 279 164 25 chr4 23419338 23419460 -160869202 + L3b LINE CR1 1322 1460 -123 2403 138 11 27 chr4 23420070 23420440 -160868222 + THE1B LTR MaLR 1 364 0 1146 209 5 14 chr4 23420791 23421001 -160867661 + MER63A DNA MER1_type 3 210 0 180 312 46 73 chr4 23421135 23421244 -160867418 + L2 LINE L2 3155 3260 -12 2213 170 28 0 chr4 23421612 23421965 -160866697 + MLT1A1 LTR MaLR 3 365 0 2329 103 0 6 chr4 23422798 23423109 -160865553 - AluSc SINE Alu 0 309 1 1458 195 53 55 chr4 23423247 23423688 -160864974 + MLT1C LTR MaLR 13 498 -7 291 266 179 6 chr4 23424914 23425054 -160863608 - MIR SINE MIR -78 184 16 235 239 28 14 chr4 23425240 23425311 -160863351 + MER117 DNA MER1_type 72 143 -54 345 217 31 85 chr4 23425518 23425647 -160863015 - MER112 DNA MER1_type -6 254 133 239 262 163 74 chr4 23425853 23426055 -160862607 - L3 LINE CR1 -255 1322 1103 236 231 15 15 chr4 23426093 23426158 -160862504 - MIR SINE MIR 0 262 198 364 308 52 44 chr4 23426357 23426618 -160862044 - MLT1K LTR MaLR -243 345 13 335 314 167 0 chr4 23426635 23426791 -160861871 - MIR SINE MIR -80 182 1 370 307 12 48 chr4 23427052 23427218 -160861444 - MIR SINE MIR -61 201 42 927 234 11 0 chr4 23427408 23427596 -160861066 + MER58A DNA MER1_type 35 224 0 639 296 24 24 chr4 23428132 23428345 -160860317 + MIR SINE MIR 50 262 0 193 263 35 0 chr4 23428345 23428402 -160860260 - MIR SINE MIR -13 249 191 191 250 197 0 chr4 23428821 23428897 -160859765 + MIR SINE MIR 122 212 -50 594 307 22 26 chr4 23429573 23429801 -160858861 - MIR SINE MIR -34 228 2 180 77 0 0 chr4 23430297 23430323 -160858339 + (CCTG)n Simple_repeat Simple_repeat 2 27 0 * 554 191 25 29 chr4 23430320 23430561 -160858101 + CT-rich Low_complexity Low_complexity 1 240 0 1056 135 43 11 chr4 23431137 23431322 -160857340 + MER20 DNA MER1_type 24 214 -5 233 290 89 40 chr4 23432024 23432148 -160856514 - MIR SINE MIR -98 164 35 195 182 68 0 chr4 23432192 23432236 -160856426 + L2 LINE L2 3219 3265 -7 288 91 0 0 chr4 23432280 23432324 -160856338 + (CA)n Simple_repeat Simple_repeat 1 44 0 1186 202 32 12 chr4 23432528 23432775 -160855887 - L1MD2 LINE L1 -1 6358 6107 236 329 61 12 chr4 23432940 23433022 -160855640 - L2 LINE L2 -81 3191 3106 21 0 0 0 chr4 23433071 23433092 -160855570 + AT_rich Low_complexity Low_complexity 1 21 0 204 243 0 86 chr4 23433934 23434004 -160854658 - L2 LINE L2 -21 3292 3229 188 239 75 88 chr4 23434262 23434421 -160854241 - L2 LINE L2 -216 3056 2900 * 288 291 25 82 chr4 23434418 23434576 -160854086 + MIR SINE MIR 36 184 -78 362 121 15 0 chr4 23436710 23436776 -160851886 + GA-rich Low_complexity Low_complexity 2 68 0 739 210 55 45 chr4 23436828 23437028 -160851634 - MIR SINE MIR -8 254 53 1305 247 60 11 chr4 23437390 23437738 -160850924 + MLT1A1 LTR MaLR 1 365 0 532 332 59 13 chr4 23437888 23438126 -160850536 - MIR SINE MIR -3 259 11 1813 257 83 57 chr4 23438386 23438985 -160849677 + MLT1E3 LTR MaLR 1 615 -9 555 69 0 0 chr4 23439041 23439113 -160849549 - AluY SINE Alu -5 306 235 1309 77 0 6 chr4 23439122 23439292 -160849370 - AluY SINE Alu -142 169 1 296 351 104 19 chr4 23440832 23440986 -160847676 + MIR3 SINE MIR 35 201 -7 972 231 77 5 chr4 23442252 23442460 -160846202 - MER58A DNA MER1_type 0 224 2 312 335 31 25 chr4 23442651 23442812 -160845850 + MIR3 SINE MIR 24 185 -23 347 56 19 0 chr4 23442815 23442869 -160845793 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 223 287 160 0 chr4 23442931 23443025 -160845637 + MIR SINE MIR 98 206 -56 2006 143 0 10 chr4 23443210 23443503 -160845159 + AluSx SINE Alu 1 290 -22 255 273 39 13 chr4 23443804 23443881 -160844781 - MIR SINE MIR -98 164 86 180 97 0 0 chr4 23444169 23444200 -160844462 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 1426 197 59 36 chr4 23444618 23444975 -160843687 + MLT1A1 LTR MaLR 1 501 -4 223 316 29 79 chr4 23445486 23445625 -160843037 - MIR SINE MIR -127 135 4 21 0 0 0 chr4 23446018 23446039 -160842623 + AT_rich Low_complexity Low_complexity 1 21 0 603 262 134 73 chr4 23446352 23446776 -160841886 - LTR33A LTR ERVL 0 523 74 424 299 67 0 chr4 23447004 23447138 -160841524 + MIR SINE MIR 46 188 -74 330 164 0 0 chr4 23447692 23447747 -160840915 + AluSq/x SINE Alu 71 125 -178 224 67 0 83 chr4 23447856 23447916 -160840746 + (GGAA)n Simple_repeat Simple_repeat 3 57 0 409 275 74 62 chr4 23448298 23448542 -160840120 - MIR SINE MIR -9 253 7 305 303 10 10 chr4 23448578 23448677 -160839985 - L2 LINE L2 -2 3270 3172 1752 100 11 23 chr4 23450652 23450913 -160837749 - AluSg SINE Alu -5 305 48 262 338 47 14 chr4 23452046 23452194 -160836468 + MIR SINE MIR 110 262 0 527 82 39 12 chr4 23452562 23452796 -160835866 + AluSx SINE Alu 1 308 -1 1362 225 15 18 chr4 23452901 23453234 -160835428 - MER58B DNA MER1_type -1 340 9 479 216 30 52 chr4 23454116 23454250 -160834412 - MER5A DNA MER1_type -22 167 37 2201 68 17 27 chr4 23454449 23454574 -160834088 + AluY SINE Alu 1 126 -185 333 0 0 0 chr4 23454574 23454611 -160834051 + (CA)n Simple_repeat Simple_repeat 2 38 0 2201 68 17 27 chr4 23454611 23454780 -160833882 + AluY SINE Alu 126 292 -19 310 264 65 32 chr4 23455046 23455201 -160833461 - L2 LINE L2 -58 3255 3096 240 302 12 35 chr4 23455213 23455299 -160833363 + L2 LINE L2 3230 3313 0 752 286 88 36 chr4 23455348 23455959 -160832703 - L1MC4a LINE L1 -1910 5898 5256 478 139 0 50 chr4 23457207 23457273 -160831389 + MER53 DNA DNA 6 67 -122 1270 169 8 37 chr4 23457273 23457516 -160831146 - MER46A DNA MER2_type 0 236 1 478 139 0 50 chr4 23457516 23457550 -160831112 + MER53 DNA DNA 67 101 -88 22 35 0 0 chr4 23457655 23457684 -160830978 + AT_rich Low_complexity Low_complexity 1 29 0 182 88 0 29 chr4 23457831 23457865 -160830797 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 646 250 12 12 chr4 23458263 23458423 -160830239 - MIR SINE MIR -52 210 51 430 337 74 10 chr4 23458771 23458973 -160829689 - MIR SINE MIR 0 262 48 438 306 100 18 chr4 23459005 23459234 -160829428 + MIR SINE MIR 14 261 -1 293 309 12 0 chr4 23459238 23459319 -160829343 + (CTA)n Simple_repeat Simple_repeat 1 82 0 223 338 71 26 chr4 23460178 23460332 -160828330 + L2 LINE L2 2924 3084 -188 369 347 99 51 chr4 23460357 23460691 -160827971 - L2 LINE L2 -18 3254 2905 181 343 0 15 chr4 23460841 23460908 -160827754 + MIR SINE MIR 66 131 -131 505 241 9 80 chr4 23462537 23462761 -160825901 + MLT1H LTR MaLR 23 230 -319 237 311 22 11 chr4 23463013 23463103 -160825559 + L2 LINE L2 3175 3265 -48 1776 198 3 14 chr4 23463489 23463864 -160824798 + MLT1A1 LTR MaLR 1 365 0 242 324 101 34 chr4 23463984 23464132 -160824530 - L2 LINE L2 -177 3095 2938 635 208 8 16 chr4 23465506 23465631 -160823031 + FLAM_A SINE Alu 1 124 -9 230 346 39 24 chr4 23465881 23466008 -160822654 - L2 LINE L2 -5 3267 3139 303 301 68 0 chr4 23466380 23466483 -160822179 + L2 LINE L2 3203 3312 -1 240 281 67 56 chr4 23466751 23466840 -160821822 + L2 LINE L2 3183 3272 0 293 261 20 149 chr4 23466914 23467209 -160821453 + MER102b DNA MER1_type 37 293 -48 482 262 40 0 chr4 23468822 23468971 -160819691 - L2 LINE L2 -557 2757 2603 3654 183 56 28 chr4 23468981 23469592 -160819070 + L1MB7 LINE L1 4725 5318 -866 2195 112 0 0 chr4 23469592 23469887 -160818775 + AluSg SINE Alu 14 308 -2 3654 183 56 28 chr4 23469887 23470681 -160817981 + L1MB7 LINE L1 5318 6179 -5 374 324 22 50 chr4 23470825 23471004 -160817658 - MIR SINE MIR -8 254 81 273 304 152 27 chr4 23471755 23471867 -160816795 + MIR3 SINE MIR 68 193 -15 1174 234 97 25 chr4 23471904 23472335 -160816327 - MLT1C LTR MaLR -5 462 1 497 256 74 17 chr4 23472335 23472511 -160816151 - MIR SINE MIR -3 259 74 187 179 26 0 chr4 23472652 23472691 -160815971 + L2 LINE L2 3274 3313 0 24 67 0 0 chr4 23474284 23474329 -160814333 + AT_rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chr4 23474399 23474427 -160814235 + AT_rich Low_complexity Low_complexity 1 28 0 282 56 0 0 chr4 23474597 23474633 -160814029 + (TAA)n Simple_repeat Simple_repeat 2 37 0 260 348 29 65 chr4 23475576 23475714 -160812948 - L2 LINE L2 -1 3271 3139 21 0 0 0 chr4 23475714 23475735 -160812927 + AT_rich Low_complexity Low_complexity 1 21 0 304 296 72 0 chr4 23476069 23476221 -160812441 - MER103 DNA DNA 0 166 4 432 108 0 54 chr4 23477047 23477121 -160811541 + MSTD LTR MaLR 4 73 -323 244 267 40 0 chr4 23477130 23477205 -160811457 + MIR SINE MIR 184 261 -1 416 268 0 0 chr4 23477270 23477367 -160811295 - MIR SINE MIR -70 192 96 1306 195 21 89 chr4 23477539 23477965 -160810697 + MLT2C1 LTR ERVL 1 397 0 578 313 52 17 chr4 23478279 23478509 -160810153 + L3 LINE CR1 1331 1568 -9 21 0 0 0 chr4 23479397 23479418 -160809244 + AT_rich Low_complexity Low_complexity 1 21 0 354 302 0 65 chr4 23479434 23479573 -160809089 + MIR3 SINE MIR 3 132 -76 496 231 88 38 chr4 23479628 23479788 -160808874 - MIR SINE MIR -46 216 49 222 294 29 0 chr4 23480218 23480286 -160808376 - L2 LINE L2 -359 2954 2885 473 182 0 0 chr4 23480286 23480363 -160808299 + Tigger5 DNA MER2_type 1 77 -2246 367 218 13 0 chr4 23480364 23480442 -160808220 - Tigger5 DNA MER2_type -3 2320 2242 * 399 210 12 0 chr4 23480432 23480513 -160808149 + Tigger5 DNA MER2_type 2242 2323 0 1738 197 55 13 chr4 23480626 23481006 -160807656 - MSTD LTR MaLR 0 396 1 628 342 53 38 chr4 23481018 23481524 -160807138 + L2 LINE L2 2802 3313 0 186 174 275 14 chr4 23481882 23481951 -160806711 + L2 LINE L2 3185 3271 -1 215 206 43 22 chr4 23482695 23482787 -160805875 + (TA)n Simple_repeat Simple_repeat 1 94 0 29 60 0 0 chr4 23482811 23482861 -160805801 + AT_rich Low_complexity Low_complexity 1 50 0 252 341 44 22 chr4 23483018 23483153 -160805509 + MIR SINE MIR 52 189 -73 287 305 92 67 chr4 23484606 23484770 -160803892 - MIR3 SINE MIR -4 204 37 237 183 0 33 chr4 23485141 23485201 -160803461 + (TAGA)n Simple_repeat Simple_repeat 2 59 0 357 242 24 32 chr4 23487304 23487428 -160801234 - MIR SINE MIR -48 214 92 208 373 25 8 chr4 23487640 23487758 -160800904 - MIR SINE MIR -84 178 59 357 141 0 0 chr4 23487954 23488025 -160800637 + (GAATG)n Simple_repeat Simple_repeat 2 72 0 465 176 44 0 chr4 23488086 23488177 -160800485 + MLT1A2 LTR MaLR 1 95 -279 209 0 98 0 chr4 23589507 23589548 -160699114 + (TAATG)n Simple_repeat Simple_repeat 1 45 0 198 256 275 25 chr4 23590068 23590228 -160698434 + MIR3 SINE MIR 2 201 -7 228 330 64 28 chr4 23590375 23590484 -160698178 - L2 LINE L2 -6 3307 3195 387 275 174 0 chr4 23592155 23592304 -160696358 + MIR SINE MIR 20 194 -68 260 323 55 92 chr4 23592306 23592470 -160696192 - L2 LINE L2 0 3272 3115 213 325 86 60 chr4 23592710 23593107 -160695555 - L2 LINE L2 -584 2730 2324 372 262 271 21 chr4 23593779 23594115 -160694547 - L2 LINE L2 -985 2329 1910 251 371 57 0 chr4 23594961 23595066 -160693596 - L2 LINE L2 -20 3252 3142 2518 111 19 33 chr4 23597005 23597373 -160691289 + THE1B LTR MaLR 1 363 -1 304 159 48 0 chr4 23597427 23597490 -160691172 - L1MC4a LINE L1 -1781 6027 5962 284 0 28 0 chr4 23597490 23597526 -160691136 + (TA)n Simple_repeat Simple_repeat 1 37 0 883 250 37 16 chr4 23597755 23597999 -160690663 - L1MC4a LINE L1 -1883 5925 5677 273 326 20 10 chr4 23599157 23599337 -160689325 + MER93b-int LTR ERV1 6579 6655 -146 453 220 34 14 chr4 23599670 23599812 -160688850 + MER93b LTR ERV1 61 214 -188 1211 180 3 95 chr4 23599829 23600123 -160688539 - AluJo SINE Alu -16 296 30 744 189 31 19 chr4 23600127 23600286 -160688376 + MER93a LTR ERV1 242 402 0 1671 172 31 3 chr4 23600416 23600706 -160687956 - AluJb SINE Alu -14 298 1 3355 87 21 7 chr4 23601140 23601577 -160687085 - MLT2A1 LTR ERVL -1 443 1 577 290 70 14 chr4 23601888 23602102 -160686560 + MIR SINE MIR 37 262 0 211 292 67 50 chr4 23602344 23602464 -160686198 + L2 LINE L2 2943 3064 -208 2267 107 0 0 chr4 23602871 23603197 -160685465 - AluSx SINE Alu 0 326 1 982 227 64 55 chr4 23603521 23603882 -160684780 - LTR16A1 LTR ERVL 0 457 94 280 361 161 4 chr4 23605955 23606185 -160682477 - L2 LINE L2 -562 2752 2487 245 363 50 61 chr4 23607208 23607460 -160681202 + L2 LINE L2 1851 2099 -1215 2570 59 0 0 chr4 23607460 23607765 -160680897 - AluY SINE Alu -6 305 1 245 363 50 61 chr4 23607765 23607889 -160680773 + L2 LINE L2 2099 2223 -1091 209 169 13 52 chr4 23608067 23608144 -160680518 + (CATATA)n Simple_repeat Simple_repeat 1 74 0 230 315 22 22 chr4 23608165 23608257 -160680405 + MER5B DNA MER1_type 57 148 -30 698 140 9 0 chr4 23608269 23608376 -160680286 - L1PB1 LINE L1 -5 6146 6039 411 372 36 65 chr4 23608425 23608902 -160679760 + L2 LINE L2 2777 3243 -29 1418 305 173 13 chr4 23609009 23609937 -160678725 + L2 LINE L2 2232 3311 -2 2063 122 0 17 chr4 23611053 23611372 -160677290 - AluSq SINE Alu 0 313 1 26 0 0 0 chr4 23611740 23611766 -160676896 + AT_rich Low_complexity Low_complexity 1 26 0 2062 159 140 8 chr4 23611782 23612160 -160676502 - MSTA LTR MaLR 0 428 1 438 243 195 12 chr4 23613133 23613302 -160675360 - MIR SINE MIR -10 252 53 503 224 0 40 chr4 23613335 23613460 -160675202 + L2 LINE L2 2210 2329 -985 664 126 176 0 chr4 23613469 23613588 -160675074 - MSTA LTR MaLR -42 386 247 824 276 148 35 chr4 23613858 23614367 -160674295 + L2 LINE L2 2740 3313 0 357 231 115 0 chr4 23614564 23614668 -160673994 - L2 LINE L2 -7 3306 3191 449 369 20 0 chr4 23615087 23615285 -160673377 + MIR SINE MIR 34 235 -27 330 182 16 41 chr4 23615290 23615411 -160673251 + (TAA)n Simple_repeat Simple_repeat 2 119 0 251 232 18 0 chr4 23615500 23615556 -160673106 + L2 LINE L2 3210 3266 -6 22 35 0 0 chr4 23616578 23616607 -160672055 + AT_rich Low_complexity Low_complexity 1 29 0 269 182 0 18 chr4 23616915 23616970 -160671692 - MLT2D LTR ERVL 0 520 467 223 174 0 0 chr4 23616973 23617019 -160671643 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 345 75 0 0 chr4 23617019 23617072 -160671590 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 1821 210 17 11 chr4 23617073 23617430 -160671232 - MLT2D LTR ERVL -55 359 1 233 217 152 11 chr4 23617477 23617569 -160671093 + L3 LINE CR1 1129 1233 -344 585 114 13 0 chr4 23617578 23617657 -160671005 - MADE1 DNA Mariner 0 80 1 192 77 0 0 chr4 23618282 23618308 -160670354 + (TA)n Simple_repeat Simple_repeat 2 27 0 259 130 0 0 chr4 23618322 23618368 -160670294 - LTR66 LTR ERVL -171 439 394 2789 205 106 75 chr4 23618705 23618938 -160669724 - L1ME2 LINE L1 -45 6119 5895 2184 119 3 6 chr4 23618938 23619249 -160669413 - AluSx SINE Alu 0 312 3 2789 205 106 75 chr4 23619249 23620626 -160668036 - L1ME2 LINE L1 -269 5895 4475 333 68 0 0 chr4 23620668 23620712 -160667950 + (CA)n Simple_repeat Simple_repeat 1 44 0 311 321 37 25 chr4 23621793 23621955 -160666707 - MIR3 SINE MIR -5 203 40 1793 137 23 37 chr4 23622375 23622674 -160665988 + AluSx SINE Alu 1 295 -17 22 35 0 0 chr4 23622679 23622708 -160665954 + AT_rich Low_complexity Low_complexity 1 29 0 750 264 77 34 chr4 23623089 23623596 -160665066 + L1M4 LINE L1 2786 3314 -2832 291 28 0 0 chr4 23623759 23623795 -160664867 + (CA)n Simple_repeat Simple_repeat 2 37 0 268 313 68 11 chr4 23623873 23624049 -160664613 + L1M4 LINE L1 3588 3773 -2373 1352 255 58 23 chr4 23624507 23624934 -160663728 + MER87 LTR ERV1 79 520 -21 337 240 31 70 chr4 23626028 23626157 -160662505 + MARNA DNA Mariner 371 494 -92 517 295 152 9 chr4 23626284 23626494 -160662168 - MIR SINE MIR -21 241 2 308 232 56 48 chr4 23626648 23626773 -160661889 - LTR67 LTR ERVL 0 557 432 282 29 0 0 chr4 23628111 23628146 -160660516 + (TG)n Simple_repeat Simple_repeat 2 36 0 297 248 137 34 chr4 23629277 23629394 -160659268 + MIR SINE MIR 118 246 -16 1808 150 85 78 chr4 23629545 23629932 -160658730 - MLT1B LTR MaLR 0 390 1 218 215 123 15 chr4 23630389 23630454 -160658208 + L2 LINE L2 3201 3272 0 221 0 35 0 chr4 23630520 23630549 -160658113 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1761 142 3 113 chr4 23630551 23630869 -160657793 - AluSx SINE Alu -19 283 1 440 273 91 0 chr4 23631458 23631601 -160657061 - MER58A DNA MER1_type 0 224 69 1939 170 167 14 chr4 23632125 23632496 -160656166 + MSTA LTR MaLR 1 428 0 10169 133 26 31 chr4 23632498 23634085 -160654577 + MSTA-int LTR MaLR 3 1580 0 1707 153 227 11 chr4 23634085 23634437 -160654225 + MSTA LTR MaLR 1 428 0 239 312 21 32 chr4 23634649 23634749 -160653913 - MER5A DNA MER1_type -26 163 54 354 248 89 57 chr4 23635530 23635687 -160652975 - LTR68 LTR ERV1 -578 162 1 874 211 75 20 chr4 23635976 23636175 -160652487 + MER63A DNA MER1_type 1 210 0 290 200 12 88 chr4 23636272 23636352 -160652310 + MLT1F1 LTR MaLR 44 117 -450 1145 247 32 7 chr4 23636358 23636641 -160652021 + L1MD3 LINE L1 7402 7691 -304 1624 133 70 17 chr4 23637171 23637471 -160651191 + MER49 LTR ERV1 1 316 -607 840 169 0 0 chr4 23637525 23637655 -160651007 - FLAM_C SINE Alu -12 131 2 3328 168 61 5 chr4 23637659 23638248 -160650414 + MER49 LTR ERV1 302 923 0 1767 128 3 85 chr4 23639048 23639354 -160649308 + MLT1C LTR MaLR 1 281 -186 2212 137 73 17 chr4 23639355 23639699 -160648963 + THE1B LTR MaLR 1 363 -1 8959 91 130 43 chr4 23639701 23641109 -160647553 + THE1B-int LTR MaLR 2 1531 -49 1008 188 66 5 chr4 23641109 23641150 -160647512 + MLT1C LTR MaLR 255 292 -175 1771 126 124 78 chr4 23641150 23641498 -160647164 + THE1B LTR MaLR 1 364 0 1008 188 66 5 chr4 23641498 23641672 -160646990 + MLT1C LTR MaLR 292 459 -8 755 301 93 43 chr4 23642279 23642969 -160645693 + L1M4 LINE L1 3840 4605 -1541 2302 97 0 7 chr4 23642969 23643278 -160645384 + AluSg SINE Alu 1 307 -3 755 301 93 43 chr4 23643278 23643675 -160644987 + L1M4 LINE L1 4605 4981 -1165 1281 171 9 5 chr4 23643690 23643907 -160644755 - AluJb SINE Alu -12 300 83 235 277 102 42 chr4 23643997 23644163 -160644499 + L1P5 LINE L1 5255 5430 -721 461 295 38 4 chr4 23644993 23645203 -160643459 - MIR SINE MIR -10 252 34 242 260 13 0 chr4 23645744 23645821 -160642841 + (TG)n Simple_repeat Simple_repeat 1 78 0 21 36 0 0 chr4 23646810 23646838 -160641824 + AT_rich Low_complexity Low_complexity 1 28 0 354 269 56 24 chr4 23646961 23647129 -160641533 - MIR SINE MIR -50 212 43 620 209 104 0 chr4 23647731 23647865 -160640797 - MIR SINE MIR -1 261 114 225 264 69 35 chr4 23647919 23647968 -160640694 + MIR SINE MIR 145 200 -62 329 244 26 0 chr4 23647968 23648046 -160640616 + MER116 DNA Mariner 1 80 0 225 264 69 35 chr4 23648046 23648083 -160640579 + MIR SINE MIR 200 234 -28 180 0 0 0 chr4 23648282 23648302 -160640360 + (TTA)n Simple_repeat Simple_repeat 2 21 0 182 279 25 101 chr4 23648547 23648626 -160640036 - MIR3 SINE MIR -22 186 114 627 326 32 65 chr4 23649400 23649771 -160638891 - L2 LINE L2 0 3272 2914 753 199 0 0 chr4 23649810 23649946 -160638716 + MER58A DNA MER1_type 9 144 0 191 206 0 0 chr4 23649990 23650024 -160638638 - MIR SINE MIR -111 151 118 474 236 28 82 chr4 23650460 23650642 -160638020 - MER113 DNA MER1_type? -5 516 345 724 266 73 34 chr4 23650644 23650693 -160637969 + MIR SINE MIR 10 56 -206 2310 206 56 23 chr4 23650693 23651213 -160637449 - MLT1F LTR MaLR -4 538 2 724 266 73 34 chr4 23651213 23651396 -160637266 + MIR SINE MIR 56 251 -11 235 180 20 40 chr4 23651616 23651666 -160636996 - MER5C DNA MER1_type -269 55 7 2263 104 10 0 chr4 23652454 23652752 -160635910 + AluSq SINE Alu 1 301 -12 1132 283 113 26 chr4 23652869 23653421 -160635241 + L1MC1 LINE L1 4 565 -5480 834 297 31 0 chr4 23653518 23653777 -160634885 + L1MC1 LINE L1 569 835 -5210 * 3129 204 157 19 chr4 23653775 23654135 -160634527 + L1MC1 LINE L1 1351 1660 -4904 302 0 26 0 chr4 23654135 23654173 -160634489 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 3129 204 157 19 chr4 23654173 23654190 -160634472 + L1MC1 LINE L1 1660 1673 -4891 8272 10 19 14 chr4 23654190 23655148 -160633514 - L1PA3 LINE L1 -2 6153 5195 3129 204 157 19 chr4 23655148 23655161 -160633501 + L1MC1 LINE L1 1673 1683 -4881 2082 113 0 7 chr4 23655161 23655467 -160633195 + AluSg SINE Alu 1 304 0 3129 204 157 19 chr4 23655467 23655974 -160632688 + L1MC1 LINE L1 1683 2377 -4187 4456 201 40 36 chr4 23655983 23657316 -160631346 + L1MC1 LINE L1 5406 6745 -6 748 181 93 21 chr4 23657322 23657515 -160631147 + L1MC3 LINE L1 7559 7765 -20 375 252 89 15 chr4 23657641 23657776 -160630886 - MIR SINE MIR -26 236 92 251 276 126 0 chr4 23657970 23658057 -160630605 + MIR SINE MIR 97 194 -68 201 196 0 0 chr4 23659151 23659207 -160629455 + GA-rich Low_complexity Low_complexity 2 57 0 720 158 0 0 chr4 23659209 23659380 -160629282 + (CA)n Simple_repeat Simple_repeat 2 172 0 180 135 0 0 chr4 23659425 23659462 -160629200 + (CA)n Simple_repeat Simple_repeat 2 38 0 509 185 0 6 chr4 23659489 23659551 -160629111 + (CA)n Simple_repeat Simple_repeat 2 63 -99 180 0 0 0 chr4 23659551 23659571 -160629091 + (GA)n Simple_repeat Simple_repeat 2 21 0 509 185 0 6 chr4 23659571 23659670 -160628992 + (CA)n Simple_repeat Simple_repeat 63 162 0 185 130 43 0 chr4 23659707 23659753 -160628909 + (CAGAGA)n Simple_repeat Simple_repeat 6 53 0 264 300 62 23 chr4 23659775 23659905 -160628757 + MLT1K LTR MaLR 420 554 -34 191 339 11 34 chr4 23660553 23660730 -160627932 - L2 LINE L2 -236 3036 2864 495 190 0 0 chr4 23660730 23660867 -160627795 + (TG)n Simple_repeat Simple_repeat 2 138 0 601 278 118 44 chr4 23661569 23661975 -160626687 + Charlie8 DNA MER1_type 107 542 -1875 2181 133 0 0 chr4 23662173 23662482 -160626180 - AluSx SINE Alu -3 309 1 391 235 87 60 chr4 23662743 23662829 -160625833 - MIR3 SINE MIR -5 203 110 2190 122 0 7 chr4 23662829 23663133 -160625529 + AluSx SINE Alu 1 302 -10 391 235 87 60 chr4 23663133 23663195 -160625467 - MIR3 SINE MIR -98 110 51 370 250 0 60 chr4 23663248 23663348 -160625314 + L2 LINE L2 3179 3272 0 219 326 44 15 chr4 23665284 23665419 -160623243 - MIR SINE MIR -96 166 28 254 229 0 0 chr4 23666099 23666147 -160622515 - L2 LINE L2 -12 3260 3213 619 328 124 14 chr4 23666181 23666529 -160622133 - L2 LINE L2 0 3313 2928 305 271 62 54 chr4 23666534 23666663 -160621999 - L2 LINE L2 0 3313 3184 1286 229 43 72 chr4 23666942 23667318 -160621344 + MLT1A1 LTR MaLR 1 365 0 244 325 74 35 chr4 23667473 23667676 -160620986 + MIR SINE MIR 47 257 -5 353 257 193 16 chr4 23667785 23667993 -160620669 - MIR SINE MIR -10 252 18 844 224 78 54 chr4 23668575 23668703 -160619959 - MLT1C LTR MaLR -160 307 184 2135 116 0 7 chr4 23668703 23669006 -160619656 - AluSx SINE Alu -11 301 1 844 224 78 54 chr4 23669006 23669172 -160619490 - MLT1C LTR MaLR -283 184 6 1703 156 23 44 chr4 23669221 23669617 -160619045 + L1MC3 LINE L1 7450 7990 -5 746 56 0 0 chr4 23669675 23669764 -160618898 - L1PA10 LINE L1 -9 6159 6071 186 313 0 0 chr4 23670028 23670092 -160618570 - L2 LINE L2 -289 2983 2920 549 261 25 6 chr4 23670323 23670480 -160618182 + MIR SINE MIR 102 261 -1 632 243 72 50 chr4 23670926 23671148 -160617514 + MIR SINE MIR 1 227 -35 400 375 48 8 chr4 23671321 23671572 -160617090 - L3 LINE CR1 -110 1467 1207 260 227 12 12 chr4 23673122 23673285 -160615377 + (TA)n Simple_repeat Simple_repeat 2 164 0 24 0 0 0 chr4 23673803 23673827 -160614835 + AT_rich Low_complexity Low_complexity 1 24 0 206 310 35 11 chr4 23674071 23674158 -160614504 + L2 LINE L2 3206 3294 -19 2225 99 0 10 chr4 23675132 23675435 -160613227 - AluY SINE Alu -11 300 1 1199 271 108 51 chr4 23675774 23676404 -160612258 + L1MC4a LINE L1 5315 5980 -1828 3187 171 12 10 chr4 23676419 23676938 -160611724 - MLT2B1 LTR ERVL 0 520 1 288 281 103 48 chr4 23677144 23677290 -160611372 - L2 LINE L2 -287 2985 2832 2509 120 11 25 chr4 23677929 23678296 -160610366 - THE1B LTR MaLR -2 362 1 343 342 38 13 chr4 23678365 23678523 -160610139 + MIR SINE MIR 64 225 -37 197 333 16 0 chr4 23678683 23678746 -160609916 + L2 LINE L2 3241 3304 -9 22 0 0 0 chr4 23678752 23678774 -160609888 + AT_rich Low_complexity Low_complexity 1 22 0 473 294 214 35 chr4 23679933 23680307 -160608355 + L2 LINE L2 2450 2890 -424 186 299 30 0 chr4 23680813 23680880 -160607782 + L2 LINE L2 3182 3250 -63 544 311 53 0 chr4 23680889 23681114 -160607548 + MIR SINE MIR 7 243 -19 301 314 119 63 chr4 23681193 23681445 -160607217 + L2 LINE L2 3006 3271 -1 568 271 85 17 chr4 23681696 23681873 -160606789 + MIR SINE MIR 25 213 -49 2652 291 115 37 chr4 23681903 23682573 -160606089 + HAL1 LINE L1 46 662 -1845 2195 102 3 10 chr4 23682573 23682896 -160605766 + AluSx SINE Alu 1 312 0 2652 291 115 37 chr4 23682896 23683915 -160604747 + HAL1 LINE L1 662 1868 -639 1387 247 27 28 chr4 23683923 23684637 -160604025 + L1MEc LINE L1 235 1106 -5290 478 359 89 46 chr4 23685028 23685421 -160603241 - L2 LINE L2 -36 3236 2827 265 332 89 21 chr4 23685529 23685719 -160602943 - L2 LINE L2 -685 2629 2427 387 329 107 48 chr4 23685804 23686300 -160602362 + L2 LINE L2 1196 1720 -1594 7073 138 5 15 chr4 23686844 23687961 -160600701 + HSMAR2 DNA Mariner 2 1107 -195 383 87 72 43 chr4 23687961 23688030 -160600632 - MLT1D LTR MaLR -378 127 57 324 250 14 0 chr4 23688040 23688112 -160600550 - L2 LINE L2 -9 3304 3232 1082 141 70 0 chr4 23688239 23688424 -160600238 + HSMAR2 DNA Mariner 1103 1300 -2 801 154 58 51 chr4 23688698 23688762 -160599900 - MLT1D LTR MaLR 0 505 443 180 0 0 0 chr4 23688762 23688782 -160599880 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 468 129 0 0 chr4 23688785 23688855 -160599807 - L1PA13 LINE L1 -11 6152 6083 801 154 58 51 chr4 23688855 23688942 -160599720 - MLT1D LTR MaLR -63 442 349 866 168 20 0 chr4 23688964 23689113 -160599549 - MLT1D LTR MaLR -326 179 28 212 328 225 30 chr4 23689282 23689584 -160599078 + L2 LINE L2 2910 3270 -2 508 321 23 5 chr4 23689785 23690000 -160598662 + LTR33 LTR ERVL 301 519 -2 204 288 0 41 chr4 23690131 23690204 -160598458 - MIR3 SINE MIR -3 205 136 293 240 93 0 chr4 23690320 23690395 -160598267 + MIR SINE MIR 119 200 -62 213 39 0 0 chr4 23691309 23691335 -160597327 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 284 267 27 0 chr4 23691337 23691412 -160597250 - L2 LINE L2 -5 3308 3232 352 284 60 0 chr4 23691643 23691759 -160596903 + MIR SINE MIR 119 241 -21 1310 158 4 9 chr4 23691907 23692135 -160596527 + AluJb SINE Alu 86 312 0 357 24 0 0 chr4 23692279 23692321 -160596341 + (TA)n Simple_repeat Simple_repeat 2 43 0 2169 86 50 13 chr4 23692355 23692657 -160596005 + AluSp SINE Alu 1 313 0 22 0 0 0 chr4 23692703 23692725 -160595937 + AT_rich Low_complexity Low_complexity 1 22 0 1481 254 138 32 chr4 23692752 23693338 -160595324 - Charlie7 DNA MER1_type -1898 714 67 1201 272 59 26 chr4 23693474 23693970 -160594692 - L1ME3A LINE L1 -1 6169 5662 436 184 11 38 chr4 23693975 23694160 -160594502 + (TA)n Simple_repeat Simple_repeat 1 180 0 4013 269 117 36 chr4 23694631 23695649 -160593013 - L1ME3A LINE L1 -575 5589 4654 246 32 0 0 chr4 23695649 23695680 -160592982 + (TC)n Simple_repeat Simple_repeat 2 32 0 4013 269 117 36 chr4 23695680 23697653 -160591009 - L1ME3A LINE L1 -1510 4654 2329 832 165 0 0 chr4 23697653 23697786 -160590876 - FLAM_C SINE Alu 0 133 1 4013 269 117 36 chr4 23697786 23698026 -160590636 - L1ME3A LINE L1 -3835 2329 2110 796 203 71 71 chr4 23698150 23698326 -160590336 - LTR16A1 LTR ERVL -2 455 277 985 83 0 0 chr4 23698326 23698459 -160590203 - L1PA3 LINE L1 -3 6152 6020 796 203 71 71 chr4 23698459 23698548 -160590114 - LTR16A1 LTR ERVL -179 278 190 402 229 116 10 chr4 23698603 23698848 -160589814 - L1M LINE L1 -757 5389 5152 * 5450 84 18 17 chr4 23698847 23699518 -160589144 - L1PA10 LINE L1 -10 6158 5489 200 33 0 33 chr4 23699518 23699548 -160589114 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2118 115 0 7 chr4 23699548 23699834 -160588828 - AluSq SINE Alu -27 286 3 5450 84 18 17 chr4 23699834 23699993 -160588669 - L1PA10 LINE L1 -678 5490 5326 333 322 15 63 chr4 23700023 23700228 -160588434 - L1M4 LINE L1 -1005 5141 4947 288 229 8 102 chr4 23700231 23700349 -160588313 - MLT1E2 LTR MaLR -519 107 1 1524 230 42 121 chr4 23700503 23700702 -160587960 - MLT1D-int LTR MaLR -97 1274 1061 186 43 0 0 chr4 23700702 23700725 -160587937 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1524 230 42 121 chr4 23700725 23701194 -160587468 - MLT1D-int LTR MaLR -310 1061 659 2561 213 21 42 chr4 23701255 23701928 -160586734 - MLT1D-int LTR MaLR -711 660 2 1632 202 98 5 chr4 23701932 23702342 -160586320 - MLT1D LTR MaLR -3 502 55 2199 114 7 3 chr4 23702449 23702755 -160585907 - AluSx SINE Alu -5 307 1 29 47 0 0 chr4 23702764 23702807 -160585855 + AT_rich Low_complexity Low_complexity 1 43 0 515 241 18 60 chr4 23702948 23703114 -160585548 + MIR SINE MIR 2 160 -102 187 368 0 0 chr4 23703159 23703216 -160585446 - L2 LINE L2 -91 3181 3125 219 345 97 27 chr4 23703409 23703708 -160584954 + L2 LINE L2 2468 2787 -527 747 296 200 11 chr4 23703799 23704249 -160584413 - MLT1L LTR MaLR -80 535 1 224 326 55 108 chr4 23704260 23704714 -160583948 + L2 LINE L2 2809 3238 -34 211 330 34 0 chr4 23704744 23704832 -160583830 - L2 LINE L2 -238 3034 2944 613 325 71 50 chr4 23704956 23705350 -160583312 + L2 LINE L2 2348 2759 -555 2212 99 18 0 chr4 23705350 23705628 -160583034 + AluSg SINE Alu 1 284 -21 219 36 0 0 chr4 23705628 23705656 -160583006 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 613 325 71 50 chr4 23705661 23705860 -160582802 + L2 LINE L2 2759 2953 -361 272 336 69 0 chr4 23705898 23706014 -160582648 + MIR SINE MIR 5 128 -134 420 278 176 18 chr4 23706103 23706330 -160582332 + L2 LINE L2 3028 3290 -23 197 323 61 10 chr4 23706360 23706459 -160582203 + L2 LINE L2 2763 2866 -448 432 312 66 54 chr4 23709420 23709843 -160578819 + LTR67 LTR ERVL 103 530 -27 1100 202 112 83 chr4 23709948 23710502 -160578160 - L1MC4 LINE L1 0 8042 7473 197 132 26 26 chr4 23711761 23711799 -160576863 - L2 LINE L2 -18 3295 3258 832 174 96 158 chr4 23711907 23712281 -160576381 - MLT1B LTR MaLR -39 351 1 218 347 107 0 chr4 23712362 23712437 -160576225 + L2 LINE L2 3211 3293 -20 196 294 76 22 chr4 23712527 23712619 -160576043 - L2 LINE L2 -5 3308 3212 969 222 58 18 chr4 23712621 23712896 -160575766 - LTR16A1 LTR ERVL -4 453 168 2130 294 64 36 chr4 23713508 23714472 -160574190 - HERV16 LTR ERVL -2293 2703 1713 1279 173 5 5 chr4 23714475 23714689 -160573973 + AluJo SINE Alu 78 291 -21 1942 146 7 10 chr4 23714747 23715041 -160573621 - AluJb SINE Alu -19 293 1 607 347 29 26 chr4 23715089 23715432 -160573230 - HERV16 LTR ERVL -3425 1571 1228 36 62 0 0 chr4 23715861 23715925 -160572737 + AT_rich Low_complexity Low_complexity 1 64 0 1168 313 64 46 chr4 23718337 23718507 -160570155 - HERV16 LTR ERVL -4130 866 700 378 0 0 0 chr4 23718507 23718549 -160570113 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1797 95 4 11 chr4 23718549 23718812 -160569850 - L1PA6 LINE L1 -16 6138 5878 1168 313 64 46 chr4 23718812 23719489 -160569173 - HERV16 LTR ERVL -4295 701 3 660 271 100 26 chr4 23719491 23719760 -160568902 - LTR16A1 LTR ERVL 0 457 169 330 221 118 110 chr4 23719766 23720038 -160568624 - L2 LINE L2 -1583 1731 1458 501 283 57 28 chr4 23721107 23721284 -160567378 + MIR SINE MIR 20 201 -61 432 224 10 0 chr4 23721774 23721872 -160566790 + MLT2B2 LTR ERVL 1 99 -416 2595 189 25 12 chr4 23721918 23722489 -160566173 - L1MC3 LINE L1 -8 7777 7200 237 266 64 32 chr4 23722489 23722583 -160566079 - MLT1F1 LTR MaLR -436 131 35 2625 106 9 19 chr4 23722608 23723041 -160565621 - L1PB1 LINE L1 0 6151 5723 2332 109 0 0 chr4 23723074 23723423 -160565239 - L1PB1 LINE L1 -400 5751 5403 189 0 0 0 chr4 23723435 23723456 -160565206 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 * 315 0 0 0 chr4 23723455 23723490 -160565172 + (TG)n Simple_repeat Simple_repeat 2 36 0 33017 73 10 7 chr4 23723490 23729030 -160559632 - L1PA6 LINE L1 -7 6147 595 382 260 35 81 chr4 23729358 23730091 -160558571 + L1ME3A LINE L1 3937 4637 -1509 563 292 26 26 chr4 23730123 23730349 -160558313 - LTR16B LTR ERVL -13 451 226 464 304 52 42 chr4 23730583 23731122 -160557540 + L1ME3A LINE L1 4670 5213 -933 22 70 0 0 chr4 23731135 23731178 -160557484 + AT_rich Low_complexity Low_complexity 1 43 0 1580 134 96 20 chr4 23731283 23731626 -160557036 + LTR24C LTR ERV1 242 610 -25 596 189 0 0 chr4 23731626 23731737 -160556925 + AluSg/x SINE Alu 197 307 -2 1249 236 33 64 chr4 23731782 23732298 -160556364 + Charlie2a DNA MER1_type 1586 2085 -777 4769 154 31 35 chr4 23732429 23733336 -160555326 - MER4D LTR ERV1 0 903 1 307 229 0 0 chr4 23733545 23733628 -160555034 + Charlie2 DNA MER1_type 2711 2793 -69 386 303 63 9 chr4 23733760 23733981 -160554681 + L1ME3A LINE L1 5730 5962 -208 24 32 0 0 chr4 23734164 23734195 -160554467 + AT_rich Low_complexity Low_complexity 1 31 0 391 113 70 0 chr4 23734208 23734279 -160554383 + MER50 LTR ERV1 1 76 -658 376 155 0 0 chr4 23734279 23734337 -160554325 - MER50-int LTR ERV1 -3808 3397 3340 582 219 0 9 chr4 23734337 23734451 -160554211 - MER50-int LTR ERV1 -4304 2901 2789 * 6159 134 46 21 chr4 23734448 23736168 -160552494 - MER50-int LTR ERV1 -5357 1848 7 867 149 39 0 chr4 23736168 23736322 -160552340 - MER50 LTR ERV1 -12 722 563 2189 149 31 0 chr4 23736327 23736717 -160551945 - MER50 LTR ERV1 -332 402 1 2290 191 21 12 chr4 23737252 23737733 -160550929 - MER31A LTR ERV1 0 485 1 2032 159 55 0 chr4 23738275 23738621 -160550041 + MLT1A1 LTR MaLR 1 365 0 239 242 55 22 chr4 23738796 23738887 -160549775 - MER103 DNA DNA -45 121 28 536 62 25 0 chr4 23738943 23739023 -160549639 + (TTCC)n Simple_repeat Simple_repeat 1 82 0 336 221 70 12 chr4 23739721 23739807 -160548855 - MIR SINE MIR -93 169 79 227 204 93 0 chr4 23741388 23741442 -160547220 - L2 LINE L2 -37 3276 3218 756 242 90 60 chr4 23742214 23742712 -160545950 + MLT1H LTR MaLR 73 590 -5 2644 146 12 32 chr4 23743728 23744222 -160544440 + MER31A LTR ERV1 1 484 -1 483 269 113 31 chr4 23745168 23745495 -160543167 + MLT1H LTR MaLR 183 536 -13 240 269 39 0 chr4 23745978 23746030 -160542632 + L2 LINE L2 3122 3175 -97 284 294 37 61 chr4 23746225 23746388 -160542274 - L3b LINE CR1 -134 1449 1291 628 274 60 75 chr4 23746600 23746852 -160541810 - MIR SINE MIR -12 250 3 221 294 228 11 chr4 23746964 23747056 -160541606 + MIR SINE MIR 38 149 -59 25 51 0 0 chr4 23747130 23747169 -160541493 + AT_rich Low_complexity Low_complexity 1 39 0 1594 214 28 21 chr4 23747325 23747712 -160540950 + MLT1B LTR MaLR 1 390 0 244 314 12 12 chr4 23748134 23748220 -160540442 + MIR3 SINE MIR 77 162 -46 496 250 70 17 chr4 23748259 23748431 -160540231 - Charlie8 DNA MER1_type -2155 262 82 6347 60 14 55 chr4 23748723 23750547 -160538115 - SVA Other Other -589 1382 1 678 282 38 41 chr4 23750929 23751220 -160537442 - L2 LINE L2 0 3313 3024 199 321 50 14 chr4 23751319 23751459 -160537203 + L2 LINE L2 2916 3060 -212 314 309 62 41 chr4 23751902 23752096 -160536566 - MLT1L LTR MaLR -415 200 3 467 298 53 8 chr4 23752097 23752228 -160536434 + L2 LINE L2 3136 3272 0 364 275 72 29 chr4 23753248 23753360 -160535302 + MIR SINE MIR 60 181 -81 471 78 0 0 chr4 23753360 23753424 -160535238 + (TA)n Simple_repeat Simple_repeat 1 64 0 364 275 72 29 chr4 23753424 23753449 -160535213 + MIR SINE MIR 181 203 -59 259 255 0 0 chr4 23753488 23753539 -160535123 + L2 LINE L2 3244 3294 -19 341 290 32 16 chr4 23754248 23754372 -160534290 + L2 LINE L2 2680 2805 -509 445 276 147 6 chr4 23754377 23754547 -160534115 - MER3 DNA MER1_type 0 209 16 488 271 178 32 chr4 23754616 23754897 -160533765 + L2 LINE L2 2992 3313 0 324 307 23 0 chr4 23755778 23755866 -160532796 + MIR SINE MIR 11 100 -162 2212 146 102 128 chr4 23755987 23756447 -160532215 + MER21B LTR ERV1 1 446 -417 1540 155 7 61 chr4 23756447 23756744 -160531918 - AluJo SINE Alu -30 282 2 2212 146 102 128 chr4 23756744 23756831 -160531831 + MER21B LTR ERV1 446 534 -329 1976 126 0 3 chr4 23756831 23757117 -160531545 - AluSx SINE Alu -27 285 1 1262 211 32 13 chr4 23757906 23758218 -160530444 + MER33 DNA MER1_type 3 320 -4 254 255 0 12 chr4 23758466 23758531 -160530131 - MIR SINE MIR -59 149 97 182 62 31 0 chr4 23758536 23758568 -160530094 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 45235 40 0 2 chr4 23758569 23764730 -160523932 - L1PA4 LINE L1 0 6155 4 320 188 0 12 chr4 23765085 23765165 -160523497 + (TA)n Simple_repeat Simple_repeat 2 80 0 204 225 0 0 chr4 23766060 23766100 -160522562 - L2 LINE L2 -20 3293 3254 340 103 109 0 chr4 23866844 23867000 -160421662 + (TA)n Simple_repeat Simple_repeat 2 174 0 21 0 0 0 chr4 23867005 23867026 -160421636 + AT_rich Low_complexity Low_complexity 1 21 0 453 96 84 6 chr4 23867042 23867208 -160421454 + (TA)n Simple_repeat Simple_repeat 2 180 0 266 138 62 15 chr4 23867208 23867273 -160421389 + MLT2B1 LTR ERVL 451 518 -2 571 271 80 73 chr4 23867756 23868058 -160420604 - MER102a DNA MER1_type 0 330 27 543 304 119 60 chr4 23868066 23868581 -160420081 + L2 LINE L2 2646 3273 -40 796 224 293 36 chr4 23868581 23869212 -160419450 + LTR50 LTR ERVL 3 795 0 543 304 119 60 chr4 23869212 23869256 -160419406 + L2 LINE L2 3273 3313 0 20601 112 19 14 chr4 23869443 23873073 -160415589 - L1P3 LINE L1 -551 5672 2058 1091 200 0 0 chr4 23873096 23873286 -160415376 - AluSg/x SINE Alu -18 294 105 2308 95 3 0 chr4 23873389 23873684 -160414978 + AluSp SINE Alu 12 307 -6 1301 193 80 80 chr4 23873986 23874061 -160414601 - MER31B LTR ERV1 -2 659 586 1811 165 131 11 chr4 23874061 23874443 -160414219 + MSTA LTR MaLR 1 428 0 1301 193 80 80 chr4 23874443 23874742 -160413920 - MER31B LTR ERV1 -75 586 87 2019 173 72 22 chr4 23874742 23875146 -160413516 - MSTB LTR MaLR -2 424 1 1301 193 80 80 chr4 23875146 23875234 -160413428 - MER31B LTR ERV1 -574 87 1 21 0 0 0 chr4 23875399 23875420 -160413242 + AT_rich Low_complexity Low_complexity 1 21 0 420 271 62 39 chr4 23875579 23875809 -160412853 + MLT1J LTR MaLR 5 322 -189 220 275 14 0 chr4 23875915 23875984 -160412678 + (ATG)n Simple_repeat Simple_repeat 3 72 0 2261 115 0 10 chr4 23876305 23876618 -160412044 + AluSx SINE Alu 1 310 -2 481 299 42 6 chr4 23877605 23877772 -160410890 - MIR SINE MIR -37 225 53 1103 97 58 11 chr4 23877892 23878070 -160410592 - THE1B LTR MaLR -2 362 183 420 164 0 0 chr4 23878188 23878255 -160410407 - AluJ/FLAM SINE Alu -244 68 2 400 345 57 57 chr4 23879598 23879844 -160408818 - MIR SINE MIR -6 256 11 2093 310 32 22 chr4 23880007 23881010 -160407652 + L2 LINE L2 2302 3313 0 23 68 0 0 chr4 23881010 23881054 -160407608 + AT_rich Low_complexity Low_complexity 1 44 0 376 298 73 49 chr4 23882143 23882348 -160406314 - MIR SINE MIR -21 241 32 250 191 105 182 chr4 23883624 23883833 -160404829 - L2 LINE L2 -5 3308 3116 900 296 79 50 chr4 23884195 23884275 -160404387 + HAL1 LINE L1 1 77 -2430 1850 106 102 7 chr4 23884275 23884559 -160404103 + AluSx SINE Alu 1 311 -1 900 296 79 50 chr4 23884559 23885060 -160403602 + HAL1 LINE L1 77 599 -1908 21 57 0 0 chr4 23885293 23885328 -160403334 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr4 23885441 23885474 -160403188 + AT_rich Low_complexity Low_complexity 1 33 0 635 254 60 10 chr4 23885481 23885682 -160402980 + HAL1 LINE L1 1191 1401 -1106 1143 151 122 0 chr4 23885782 23885987 -160402675 - MSTA LTR MaLR -198 230 1 864 89 0 0 chr4 23886255 23886378 -160402284 + (TA)n Simple_repeat Simple_repeat 2 124 0 6489 65 5 5 chr4 23886462 23887968 -160400694 - L1PA7 LINE L1 -2 6152 4624 9510 89 15 1 chr4 23887968 23888282 -160400380 + L1P LINE L1 3195 3503 -2643 201 39 0 0 chr4 23888282 23888308 -160400354 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 9510 89 15 1 chr4 23888308 23889359 -160399303 + L1P LINE L1 3503 4578 -1568 254 336 55 45 chr4 23889416 23889526 -160399136 - L2 LINE L2 -6 3266 3156 1752 134 106 3 chr4 23890068 23890352 -160398310 - AluSp SINE Alu 0 313 1 260 304 36 18 chr4 23890633 23890745 -160397917 - MIR SINE MIR -11 251 138 621 274 132 5 chr4 23890810 23891007 -160397655 - MIR SINE MIR -9 253 32 324 311 97 60 chr4 23891438 23891737 -160396925 + L2 LINE L2 2949 3258 -55 359 234 65 28 chr4 23891870 23891977 -160396685 - MIR SINE MIR 0 262 152 181 359 136 0 chr4 23893326 23893510 -160395152 - L2 LINE L2 -126 3187 2979 447 164 18 18 chr4 23894100 23894210 -160394452 + GA-rich Low_complexity Low_complexity 2 111 0 201 178 0 0 chr4 23895037 23895082 -160393580 + (TG)n Simple_repeat Simple_repeat 2 46 0 1977 180 11 6 chr4 23895238 23895599 -160393063 + MLT1A1 LTR MaLR 3 365 0 2188 86 0 43 chr4 23895807 23896111 -160392551 - AluY SINE Alu -20 291 1 317 316 11 0 chr4 23896620 23896715 -160391947 - MIR SINE MIR -17 245 150 2630 81 2 81 chr4 23896716 23897125 -160391537 + MER51B LTR ERV1 1 377 0 361 289 0 0 chr4 23897874 23897964 -160390698 - L2 LINE L2 -3 3310 3221 421 246 8 63 chr4 23897983 23898109 -160390553 + L2 LINE L2 3194 3312 -1 * 664 290 112 74 chr4 23898099 23898725 -160389937 - L2 LINE L2 -74 3239 2594 294 103 0 0 chr4 23899397 23899436 -160389226 - THE1B LTR MaLR -325 39 1 262 235 153 41 chr4 23899508 23899678 -160388984 - Charlie8 DNA MER1_type -2153 264 76 277 308 83 0 chr4 23899823 23899943 -160388719 + MIR SINE MIR 100 229 -33 673 284 124 20 chr4 23900458 23900901 -160387761 - LTR33A LTR ERVL 0 523 35 344 343 47 24 chr4 23901183 23901352 -160387310 + MIR SINE MIR 65 237 -25 2759 61 56 5 chr4 23902121 23902542 -160386120 - L1PA8 LINE L1 0 6172 5767 552 299 87 80 chr4 23902661 23903247 -160385415 + L2 LINE L2 2730 3313 0 1977 55 63 0 chr4 23903312 23903567 -160385095 + L1P3 LINE L1 5441 5711 -443 297 363 27 0 chr4 23903653 23903799 -160384863 - L2 LINE L2 -12 3301 3152 191 261 87 0 chr4 23904200 23904269 -160384393 - MIR SINE MIR -71 191 117 409 348 53 18 chr4 23904748 23904975 -160383687 - MIR SINE MIR 0 262 28 271 317 132 39 chr4 23905439 23905602 -160383060 + MIR SINE MIR 6 189 -73 219 69 0 0 chr4 23905641 23905670 -160382992 + (TC)n Simple_repeat Simple_repeat 2 30 0 293 327 69 0 chr4 23905947 23906048 -160382614 - MIR3 SINE MIR -16 192 85 197 264 191 18 chr4 23907065 23907175 -160381487 - MIR SINE MIR -37 225 97 610 205 25 0 chr4 23910158 23910280 -160378382 + MLT1B LTR MaLR 1 125 -265 1144 29 0 7 chr4 23910280 23910419 -160378243 - L1PA5 LINE L1 -245 5910 5773 1774 48 0 4 chr4 23910419 23910635 -160378027 + L1PA5 LINE L1 5928 6145 -9 189 0 0 0 chr4 23910635 23910656 -160378006 + (TA)n Simple_repeat Simple_repeat 1 21 0 1275 220 7 22 chr4 23910666 23910943 -160377719 + MLT1B LTR MaLR 117 389 -1 2471 133 48 7 chr4 23911393 23911808 -160376854 - MSTB1 LTR MaLR 0 432 1 262 284 0 37 chr4 23912295 23912376 -160376286 - MER2 DNA MER2_type -1 344 267 722 148 16 0 chr4 23912521 23912649 -160376013 - MER2 DNA MER2_type -162 183 54 419 248 37 0 chr4 23912699 23912808 -160375854 - MER81 DNA DNA -1 113 1 796 189 54 49 chr4 23913143 23913328 -160375334 + MER5A DNA MER1_type 4 189 0 337 313 60 12 chr4 23913348 23913514 -160375148 - MER5B DNA MER1_type -3 175 2 22 0 0 0 chr4 23917224 23917246 -160371416 + AT_rich Low_complexity Low_complexity 1 22 0 230 241 80 0 chr4 23917311 23917380 -160371282 - MIR SINE MIR -63 145 69 1123 197 62 55 chr4 23917894 23918219 -160370443 + L1MA10 LINE L1 6005 6331 -3 1824 141 32 60 chr4 23918633 23918980 -160369682 - MER1B DNA MER1_type 0 337 1 671 141 156 8 chr4 23919252 23919380 -160369282 - MSTA LTR MaLR 0 428 282 300 175 18 0 chr4 23919508 23919565 -160369097 + HAL1 LINE L1 1533 1590 -917 983 228 46 3 chr4 23919614 23919899 -160368763 + MER33 DNA MER1_type 22 318 -6 1145 266 75 44 chr4 23919911 23920591 -160368071 + HAL1 LINE L1 1803 2503 -4 264 197 26 26 chr4 23921385 23921461 -160367201 + MER116 DNA Mariner 4 79 -1 421 216 31 74 chr4 23921476 23921638 -160367024 + L2 LINE L2 3159 3313 0 23 86 0 0 chr4 23921668 23921726 -160366936 + AT_rich Low_complexity Low_complexity 1 58 0 448 210 31 0 chr4 23922646 23922808 -160365854 + (TA)n Simple_repeat Simple_repeat 2 168 0 216 122 0 0 chr4 23922839 23922880 -160365782 + (GA)n Simple_repeat Simple_repeat 1 41 0 844 300 81 3 chr4 23923588 23923921 -160364741 - L2 LINE L2 -1 3312 2954 2104 138 48 20 chr4 23924599 23924953 -160363709 + THE1B LTR MaLR 1 364 0 263 329 129 50 chr4 23925733 23926013 -160362649 + L2 LINE L2 2553 2854 -460 382 390 70 18 chr4 23926144 23926475 -160362187 + L2 LINE L2 2925 3272 0 24 0 0 0 chr4 23926539 23926563 -160362099 + AT_rich Low_complexity Low_complexity 1 24 0 3160 143 47 33 chr4 23926841 23927634 -160361028 + pTR5 LTR ERV1 743 2021 -417 313 242 33 0 chr4 23927638 23927729 -160360933 + LTR30 LTR ERV1 544 637 -85 2367 96 3 0 chr4 23927729 23928062 -160360600 + pTR5 LTR ERV1 59 392 -2046 475 223 0 0 chr4 23928249 23928352 -160360310 + MER58 DNA MER1_type 2318 2420 0 235 200 170 16 chr4 23929502 23929555 -160359107 - MIR SINE MIR -54 154 111 1604 279 56 28 chr4 23929555 23930164 -160358498 + MLT2E LTR ERVL 3 628 0 235 200 170 16 chr4 23930164 23930221 -160358441 - MIR SINE MIR -97 111 20 213 121 0 0 chr4 23930779 23930812 -160357850 + (GGA)n Simple_repeat Simple_repeat 3 35 0 226 306 0 31 chr4 23930816 23930914 -160357748 + A-rich Low_complexity Low_complexity 3 97 0 486 272 114 27 chr4 23931260 23931444 -160357218 - MIR SINE MIR -34 228 29 834 226 95 50 chr4 23932632 23932676 -160355986 - MER58B DNA MER1_type -2088 332 291 629 305 9 27 chr4 23932676 23932899 -160355763 - MER20 DNA MER1_type 0 219 1 834 226 95 50 chr4 23932899 23933137 -160355525 - MER58B DNA MER1_type -2129 291 37 183 42 0 0 chr4 23933611 23933635 -160355027 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1977 131 0 0 chr4 23933642 23933909 -160354753 - AluSc SINE Alu -36 273 7 207 281 0 0 chr4 23934650 23934732 -160353930 + (TA)n Simple_repeat Simple_repeat 2 83 0 873 232 6 6 chr4 23935346 23935523 -160353139 - MER5A DNA MER1_type -9 180 4 2373 232 63 3 chr4 23935654 23936254 -160352408 - MER99 DNA DNA -1 827 192 251 191 0 0 chr4 23936961 23937003 -160351659 - MER99 DNA DNA -736 92 51 1432 175 79 10 chr4 23937003 23937045 -160351617 - AluSx SINE Alu -1 311 273 1645 169 83 17 chr4 23937045 23937395 -160351267 + THE1C LTR MaLR 1 373 -2 1432 175 79 10 chr4 23937395 23937523 -160351139 - AluSx SINE Alu -39 273 155 234 62 0 0 chr4 23937523 23937555 -160351107 + (TTA)n Simple_repeat Simple_repeat 1 32 0 1432 175 79 10 chr4 23937555 23937674 -160350988 - AluSx SINE Alu -157 155 1 281 217 17 0 chr4 23937674 23937734 -160350928 - MER99 DNA DNA -766 62 2 948 127 27 7 chr4 23937813 23937963 -160350699 - L1PA15 LINE L1 -6 6159 6007 1065 287 226 6 chr4 23938025 23938548 -160350114 + L2 LINE L2 2365 2997 -316 1618 166 3 11 chr4 23938840 23939124 -160349538 + Tigger3(Golem) DNA MER2_type 2747 3028 -1 801 272 28 101 chr4 23939246 23939390 -160349272 + MLT1I LTR MaLR 5 158 -251 2453 68 0 10 chr4 23939390 23939699 -160348963 - AluY SINE Alu -5 306 1 801 272 28 101 chr4 23939699 23939991 -160348671 + MLT1I LTR MaLR 158 409 0 239 83 28 0 chr4 23941929 23941965 -160346697 - L1PA7 LINE L1 -458 5714 5678 3418 64 11 2 chr4 23941965 23942417 -160346245 + L1PA7 LINE L1 5694 6149 -5 3498 142 32 14 chr4 23942484 23943148 -160345514 - Tigger3(Golem) DNA MER2_type -1 3028 2353 1108 212 0 0 chr4 23943141 23943339 -160345323 - Tigger3(Golem) DNA MER2_type -2828 201 4 * 1540 201 7 3 chr4 23943403 23943687 -160344975 + AluJb SINE Alu 1 285 -27 330 45 0 0 chr4 23943687 23943731 -160344931 + (CA)n Simple_repeat Simple_repeat 2 45 0 2941 37 0 0 chr4 23944256 23944606 -160344056 - L1PA5 LINE L1 -2 6152 5803 1642 43 0 0 chr4 23944606 23944814 -160343848 + L1P LINE L1 5030 5237 -909 315 207 12 61 chr4 23944887 23944969 -160343693 + MIR SINE MIR 166 243 -19 2021 130 3 15 chr4 23945690 23946014 -160342648 + MER44D DNA MER2_type 11 600 -9 2258 110 51 25 chr4 23946014 23946369 -160342293 + THE1B LTR MaLR 1 364 0 766 159 53 36 chr4 23946486 23946659 -160342003 - MLT1A1 LTR MaLR 0 365 226 606 154 138 15 chr4 23946668 23946798 -160341864 + MLT1A1 LTR MaLR 2 147 -218 396 217 60 0 chr4 23946908 23946991 -160341671 - MLT1A1 LTR MaLR -276 89 2 2392 236 102 0 chr4 23946992 23947521 -160341141 - MLT1A1-int LTR MaLR 0 1735 1153 618 267 14 74 chr4 23947536 23947753 -160340909 - MLT1A1-int LTR MaLR -721 1014 811 1361 86 111 82 chr4 23947784 23948079 -160340583 - AluSg SINE Alu 0 330 29 1141 222 65 37 chr4 23948079 23948430 -160340232 - MLT1A1 LTR MaLR -4 361 1 414 211 256 0 chr4 23948742 23948875 -160339787 - MER33 DNA MER1_type -152 172 6 709 236 162 82 chr4 23949003 23949405 -160339257 + MLT2B1 LTR ERVL 87 520 0 238 183 0 50 chr4 23949804 23949864 -160338798 + LTR33A LTR ERVL 445 501 -22 371 287 64 19 chr4 23950366 23950523 -160338139 - MLT1K LTR MaLR -2 586 423 343 362 71 21 chr4 23950580 23950862 -160337800 - MLT1K LTR MaLR -275 313 18 437 227 49 47 chr4 23951095 23951254 -160337408 - MLT1H LTR MaLR -8 547 386 338 282 0 13 chr4 23952147 23952225 -160336437 - MLT1H LTR MaLR -398 151 75 185 254 16 79 chr4 23953290 23953353 -160335309 - L2 LINE L2 -15 3257 3199 638 316 26 7 chr4 23954047 23954319 -160334343 + MER110 LTR ERV1 215 491 0 311 164 100 64 chr4 23954419 23954529 -160334133 + MER110 LTR ERV1 378 491 0 7107 258 63 32 chr4 23954765 23955483 -160333179 + L1MDa LINE L1 16 710 -5830 2019 157 40 0 chr4 23955483 23955833 -160332829 + THE1B LTR MaLR 1 364 0 7107 258 63 32 chr4 23955833 23958491 -160330171 + L1MDa LINE L1 710 3499 -3041 1036 167 0 0 chr4 23958586 23958748 -160329914 + AluJb SINE Alu 142 303 -9 2191 276 73 41 chr4 23958750 23959926 -160328736 + L1MDa LINE L1 3554 4767 -1773 476 236 71 0 chr4 23959930 23960057 -160328605 - L1MA5 LINE L1 -212 6088 5953 23 0 0 0 chr4 23960701 23960724 -160327938 + AT_rich Low_complexity Low_complexity 1 23 0 528 155 17 43 chr4 23961069 23961185 -160327477 - L1MA4 LINE L1 -298 6002 5890 258 156 0 0 chr4 23961304 23961349 -160327313 + (TA)n Simple_repeat Simple_repeat 1 45 0 336 231 35 8 chr4 23961349 23961473 -160327189 + L1MC4 LINE L1 1995 6983 -1339 307 214 0 14 chr4 23961445 23961515 -160327147 + L1MC/D LINE L1 1995 2063 -4363 * 3102 173 29 24 chr4 23961516 23962665 -160325997 - L1MA4 LINE L1 -507 5793 4653 936 168 10 0 chr4 23962665 23962862 -160325800 + L1MA4 LINE L1 6091 6289 -11 428 175 21 0 chr4 23962886 23962983 -160325679 + L1M4 LINE L1 4980 5078 -1068 2633 252 42 17 chr4 23963038 23964071 -160324591 + L1MC/D LINE L1 4657 5718 -743 235 286 133 19 chr4 23965791 23965896 -160322766 + MIR SINE MIR 36 152 -110 934 247 59 52 chr4 23966200 23966625 -160322037 + MER69B DNA AcHobo 710 1137 -89 21 36 0 0 chr4 23969869 23969897 -160318765 + AT_rich Low_complexity Low_complexity 1 28 0 309 347 47 24 chr4 23969929 23970226 -160318436 + HAL1b LINE L1 372 675 -673 384 59 0 0 chr4 23970473 23970524 -160318138 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 1882 172 3 0 chr4 23970563 23970866 -160317796 + AluSx SINE Alu 1 304 -8 25 31 0 0 chr4 23970942 23970974 -160317688 + AT_rich Low_complexity Low_complexity 1 32 0 432 292 23 8 chr4 23971093 23971223 -160317439 - MIR SINE MIR -21 241 110 21 36 0 0 chr4 23971258 23971286 -160317376 + AT_rich Low_complexity Low_complexity 1 28 0 239 329 26 0 chr4 23972390 23972466 -160316196 - L2 LINE L2 -54 3259 3182 268 196 0 0 chr4 23973103 23973149 -160315513 + Tigger2 DNA MER2_type 1 46 -2672 706 130 109 7 chr4 23973175 23973313 -160315349 + Tigger2 DNA MER2_type 2292 2443 -275 1016 178 24 28 chr4 23973313 23973560 -160315102 + THE1C LTR MaLR 1 246 -129 531 103 121 52 chr4 23973662 23973722 -160314940 + Tigger2 DNA MER2_type 2370 2424 -294 2037 142 19 16 chr4 23973722 23974096 -160314566 + THE1C LTR MaLR 1 375 0 531 103 121 52 chr4 23974096 23974151 -160314511 + Tigger2 DNA MER2_type 2424 2493 -225 1600 190 6 19 chr4 23974155 23974193 -160314469 - AluJo SINE Alu -5 307 270 2183 126 36 14 chr4 23974193 23974549 -160314113 + THE1B LTR MaLR 1 364 0 1600 190 6 19 chr4 23974549 23974821 -160313841 - AluJo SINE Alu -42 270 1 1225 166 38 8 chr4 23974821 23975056 -160313606 + Tigger2 DNA MER2_type 2477 2718 0 310 282 109 23 chr4 23976126 23976300 -160312362 - MIR SINE MIR -2 260 72 650 323 83 15 chr4 23976496 23977015 -160311647 - L2 LINE L2 0 3313 2682 2050 113 7 7 chr4 23977018 23977319 -160311343 - AluSq SINE Alu -12 301 1 2037 144 0 6 chr4 23977388 23977701 -160310961 + AluSx SINE Alu 1 311 -1 425 182 68 0 chr4 23977862 23977950 -160310712 + FLAM_A SINE Alu 2 95 -47 25 0 0 0 chr4 23977950 23977975 -160310687 + AT_rich Low_complexity Low_complexity 1 25 0 1559 163 31 0 chr4 23978644 23978901 -160309761 + AluSx SINE Alu 12 276 -36 873 322 86 47 chr4 23978927 23979583 -160309079 - L2 LINE L2 -252 3061 2370 2056 133 7 0 chr4 23979696 23979997 -160308665 + AluSx SINE Alu 1 303 -9 1589 216 28 37 chr4 23980088 23980519 -160308143 + MSTC LTR MaLR 2 428 0 1770 144 33 0 chr4 23981968 23982273 -160306389 - AluSg SINE Alu 0 314 1 188 288 61 0 chr4 23983318 23983384 -160305278 - L2 LINE L2 -15 3298 3229 22 0 0 0 chr4 23983765 23983787 -160304875 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr4 23984045 23984065 -160304597 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 7730 26 5 0 chr4 23984266 23985950 -160302712 - L1PA4 LINE L1 -3 6152 4464 4515 35 4 0 chr4 23985950 23986496 -160302166 + L1PA4 LINE L1 3908 4455 -1691 2023 143 40 27 chr4 23987325 23987695 -160300967 + THE1C LTR MaLR 1 375 0 23 0 0 0 chr4 23988209 23988232 -160300430 + AT_rich Low_complexity Low_complexity 1 23 0 393 280 19 85 chr4 23988382 23988700 -160299962 - HAL1 LINE L1 -162 2345 2049 3070 68 5 2 chr4 23988702 23989100 -160299562 + MLT2A1 LTR ERVL 1 399 -45 23 33 0 0 chr4 23989121 23989151 -160299511 + AT_rich Low_complexity Low_complexity 1 30 0 319 106 0 0 chr4 23989151 23989198 -160299464 + MLT2A1 LTR ERVL 390 436 -8 25 31 0 0 chr4 23989213 23989245 -160299417 + AT_rich Low_complexity Low_complexity 1 32 0 401 321 108 47 chr4 23989383 23989595 -160299067 - HAL1 LINE L1 -607 1900 1676 330 304 28 56 chr4 23989871 23990085 -160298577 + L1MEd LINE L1 529 736 -5636 267 303 81 70 chr4 23990193 23990724 -160297938 + L1MEd LINE L1 967 1503 -4869 * 378 300 144 15 chr4 23990701 23990971 -160297691 + L1MEd LINE L1 1370 1674 -4710 452 237 144 66 chr4 23991053 23991310 -160297352 + LTR37B LTR ERV1 11 287 -181 360 263 71 86 chr4 23992082 23992267 -160296395 + L1MEd LINE L1 2490 2676 -3706 1604 152 70 7 chr4 23992267 23992537 -160296125 + AluSx SINE Alu 1 287 -25 215 30 0 30 chr4 23992544 23992577 -160296085 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 1931 134 0 3 chr4 23992578 23992862 -160295800 + AluSx SINE Alu 10 292 -20 360 263 71 86 chr4 23992862 23992921 -160295741 + L1MEd LINE L1 2681 2740 -3642 7527 31 0 4 chr4 23993056 23994056 -160294606 - L1PA3 LINE L1 0 6155 5157 333 248 9 44 chr4 23994056 23994169 -160294493 + CT-rich Low_complexity Low_complexity 2 110 0 231 277 97 53 chr4 23994558 23994858 -160293804 - L1ME LINE L1 -593 5569 5257 24 32 0 0 chr4 23994986 23995017 -160293645 + AT_rich Low_complexity Low_complexity 1 31 0 548 299 53 13 chr4 23995274 23995592 -160293070 - L1ME LINE L1 -1328 4818 4488 251 266 137 16 chr4 23995596 23995720 -160292942 - L1ME LINE L1 -1736 4410 4272 937 247 60 7 chr4 23995720 23996261 -160292401 - MLT1E1 LTR MaLR -22 631 1 210 71 0 0 chr4 23997635 23997663 -160290999 + (CAA)n Simple_repeat Simple_repeat 2 29 0 230 389 159 0 chr4 23997742 23997899 -160290763 + L2 LINE L2 3016 3197 -75 2377 156 18 10 chr4 23998086 23998483 -160290179 - MSTA LTR MaLR -2 426 27 22 35 0 0 chr4 23999797 23999826 -160288836 + AT_rich Low_complexity Low_complexity 1 29 0 202 331 93 26 chr4 24000131 24000282 -160288380 - MIR SINE MIR -29 233 73 25 31 0 0 chr4 24000627 24000659 -160288003 + AT_rich Low_complexity Low_complexity 1 32 0 386 324 41 29 chr4 24000881 24001051 -160287611 + MIR SINE MIR 90 261 -1 21 36 0 0 chr4 24001217 24001245 -160287417 + AT_rich Low_complexity Low_complexity 1 28 0 3667 301 92 20 chr4 24003142 24004810 -160283852 + L2 LINE L2 996 2782 -532 281 355 30 105 chr4 24004935 24005267 -160283395 - L2 LINE L2 0 3272 2966 2041 131 0 13 chr4 24005396 24005709 -160282953 + AluSg SINE Alu 1 309 -1 1730 180 44 0 chr4 24005752 24006069 -160282593 + MER44D DNA MER2_type 9 609 0 351 289 50 8 chr4 24006450 24006571 -160282091 - MLT1L LTR MaLR -349 266 141 1275 229 83 47 chr4 24007077 24007439 -160281223 + MLT1B LTR MaLR 1 375 -15 1676 135 0 4 chr4 24007967 24008204 -160280458 + AluSq SINE Alu 1 236 -77 1049 314 90 24 chr4 24008932 24010093 -160278569 + L1MEc LINE L1 829 2065 -4331 202 182 36 0 chr4 24010111 24010166 -160278496 + (TA)n Simple_repeat Simple_repeat 2 58 0 765 231 117 36 chr4 24010225 24010506 -160278156 + L1MC3 LINE L1 6063 6366 -1419 388 260 27 81 chr4 24010508 24010731 -160277931 + L1MEc LINE L1 2201 2411 -3985 2652 167 82 34 chr4 24010747 24011490 -160277172 - LTR1B LTR ERV1 0 826 1 861 242 56 78 chr4 24011505 24011951 -160276711 + L1MEc LINE L1 2399 2834 -3381 576 277 104 17 chr4 24011947 24012427 -160276235 + L1MEc LINE L1 3953 4474 -1741 * 1270 242 47 85 chr4 24012500 24013244 -160275418 + L1MEc LINE L1 1679 2394 -4002 3659 287 61 46 chr4 24013247 24014776 -160273886 + L1MEc LINE L1 3440 4990 -1225 397 332 65 35 chr4 24014785 24015017 -160273645 - LTR33 LTR ERVL -272 249 11 679 147 0 9 chr4 24015032 24015141 -160273521 - MLT1D LTR MaLR -340 165 58 189 0 0 0 chr4 24015294 24015315 -160273347 + (CA)n Simple_repeat Simple_repeat 2 22 0 1452 219 42 26 chr4 24015315 24015698 -160272964 + L1MB8 LINE L1 5680 6068 -110 461 270 57 52 chr4 24015747 24015958 -160272704 + L1ME3A LINE L1 5945 6156 -14 225 363 39 0 chr4 24016209 24016311 -160272351 - L2 LINE L2 -962 2352 2247 825 237 6 0 chr4 24016474 24016647 -160272015 + LTR33 LTR ERVL 344 517 -4 358 291 0 0 chr4 24017341 24017420 -160271242 - MER5B DNA MER1_type 0 178 100 1052 345 42 24 chr4 24017584 24018210 -160270452 + ERVL LTR ERVL 1492 2128 -3636 370 306 48 27 chr4 24018238 24018471 -160270191 + ERVL LTR ERVL 2203 2430 -3224 665 220 8 8 chr4 24018560 24018692 -160269970 + MER5A DNA MER1_type 26 157 -32 1082 332 32 16 chr4 24018803 24019306 -160269356 + ERVL LTR ERVL 2680 3190 -2574 4217 236 61 40 chr4 24019562 24021483 -160267179 + L1MEc LINE L1 59 2030 -4185 2199 135 0 0 chr4 24021483 24021795 -160266867 + AluSx SINE Alu 1 312 0 4217 236 61 40 chr4 24021795 24022760 -160265902 + L1MEc LINE L1 2030 2973 -3242 968 146 0 13 chr4 24022871 24023029 -160265633 + L1PA7 LINE L1 5986 6141 -13 3572 264 60 45 chr4 24023117 24024937 -160263725 + L1ME LINE L1 2274 4120 -2095 1473 226 41 62 chr4 24024949 24025279 -160263383 + L1ME LINE L1 4795 5131 -1035 4664 26 0 2 chr4 24025279 24025826 -160262836 + L1PA4 LINE L1 5610 6155 0 1473 226 41 62 chr4 24025826 24026394 -160262268 + L1ME LINE L1 5131 5673 -493 1926 214 33 70 chr4 24026401 24026919 -160261743 - MLT1D LTR MaLR -6 499 1 271 281 11 0 chr4 24026919 24027008 -160261654 + L1ME LINE L1 5670 5759 -407 1177 89 24 18 chr4 24027008 24027177 -160261485 - THE1C LTR MaLR -205 170 1 389 282 24 59 chr4 24027259 24027429 -160261233 + ERVL LTR ERVL 3468 3631 -2023 588 313 46 11 chr4 24027877 24028139 -160260523 + ERVL LTR ERVL 4323 4593 -1061 330 403 22 0 chr4 24028725 24028864 -160259798 + LTR33 LTR ERVL 86 227 -294 551 317 165 17 chr4 24028990 24029403 -160259259 - LTR33 LTR ERVL 0 521 48 265 268 163 66 chr4 24030642 24030843 -160257819 + MIR SINE MIR 36 252 -10 240 269 39 87 chr4 24031554 24031658 -160257004 + MLT1H1 LTR MaLR 140 238 -292 261 270 145 50 chr4 24031685 24031844 -160256818 + MLT1H1 LTR MaLR 382 555 0 3638 161 70 57 chr4 24031894 24032671 -160255991 - MER54B LTR ERVL 0 793 7 2133 134 111 28 chr4 24032917 24033312 -160255350 + MSTA LTR MaLR 1 428 0 1964 134 113 3 chr4 24033384 24033712 -160254950 - THE1B LTR MaLR 0 364 1 1827 128 136 60 chr4 24035122 24035519 -160253143 + MSTA LTR MaLR 2 428 0 1459 34 0 6 chr4 24035608 24035783 -160252879 - AluY SINE Alu -9 302 129 183 80 0 0 chr4 24036080 24036105 -160252557 + (TG)n Simple_repeat Simple_repeat 1 25 0 1604 239 92 10 chr4 24036111 24036512 -160252150 + MLT2B1 LTR ERVL 83 516 -4 856 256 59 10 chr4 24036517 24036822 -160251840 + HERVL-B1 LTR ERVL 2 321 -5333 * 3277 184 20 17 chr4 24036820 24037407 -160251255 + HERVL-B1 LTR ERVL 1151 1739 -4025 7328 183 23 18 chr4 24037411 24040130 -160248532 + HERVL-B1 LTR ERVL 2921 5757 -7 1204 251 27 13 chr4 24040130 24040429 -160248233 + MLT2B1 LTR ERVL 1 303 -217 21 0 0 0 chr4 24040486 24040507 -160248155 + AT_rich Low_complexity Low_complexity 1 21 0 274 119 24 0 chr4 24040633 24040675 -160247987 + MER4E LTR ERV1 654 696 -70 442 316 109 57 chr4 24040793 24041373 -160247289 + L1M4 LINE L1 3047 3656 -2490 21 36 0 0 chr4 24041854 24041882 -160246780 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr4 24042030 24042060 -160246602 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr4 24042128 24042157 -160246505 + AT_rich Low_complexity Low_complexity 1 29 0 246 304 173 24 chr4 24042197 24042365 -160246297 - MIR SINE MIR -48 214 22 1002 293 163 27 chr4 24043190 24043774 -160244888 - MLT2F LTR ERVL 0 663 1 262 294 29 39 chr4 24043973 24044075 -160244587 + L3 LINE CR1 1471 1571 -6 2280 68 0 39 chr4 24044574 24044882 -160243780 + AluY SINE Alu 5 300 -11 403 304 141 48 chr4 24045648 24046003 -160242659 - L2 LINE L2 -5 3308 2921 437 295 0 22 chr4 24046129 24046268 -160242394 - MER45 DNA AcHobo -2 1579 1444 754 242 28 6 chr4 24046656 24046838 -160241824 - MER20 DNA MER1_type 0 219 34 258 274 226 0 chr4 24047340 24047446 -160241216 + L2 LINE L2 3184 3313 0 1605 186 94 3 chr4 24047455 24047762 -160240900 - MLT1A1 LTR MaLR 0 365 31 638 159 0 0 chr4 24049142 24049255 -160239407 + L1M4 LINE L1 4705 4817 -1329 2354 279 52 16 chr4 24049356 24050466 -160238196 - L1M3c LINE L1 -4644 1497 428 2143 123 53 17 chr4 24050466 24050825 -160237837 + THE1C LTR MaLR 1 372 -3 1111 144 82 16 chr4 24050635 24050829 -160237833 + THE1C LTR MaLR 169 375 0 * 2354 279 52 16 chr4 24050829 24050978 -160237684 - L1M3c LINE L1 -5717 424 142 2451 72 0 0 chr4 24051171 24051464 -160237198 - AluSp SINE Alu -20 293 1 1141 229 100 116 chr4 24051465 24052010 -160236652 - Zaphod DNA AcHobo -1552 2479 1954 2296 113 0 3 chr4 24052010 24052321 -160236341 - AluY SINE Alu -1 310 1 1141 229 100 116 chr4 24052321 24052725 -160235937 - Zaphod DNA AcHobo -2077 1954 1545 2379 81 0 25 chr4 24052728 24053048 -160235614 + AluSx SINE Alu 1 312 0 183 380 14 0 chr4 24053165 24053236 -160235426 + L2 LINE L2 3198 3269 -44 2382 90 0 0 chr4 24053512 24053811 -160234851 - AluSp SINE Alu -14 299 1 260 363 59 15 chr4 24055654 24055789 -160232873 - MIR SINE MIR -98 164 24 23 33 0 0 chr4 24056129 24056159 -160232503 + AT_rich Low_complexity Low_complexity 1 30 0 261 202 0 135 chr4 24056639 24056743 -160231919 - L1MC4 LINE L1 -1339 6703 6614 225 178 0 0 chr4 24056762 24056807 -160231855 + (TA)n Simple_repeat Simple_repeat 2 46 0 193 327 0 0 chr4 24058602 24058657 -160230005 + L2 LINE L2 2589 2643 -671 240 279 15 0 chr4 24059444 24059512 -160229150 + GA-rich Low_complexity Low_complexity 3 71 0 21 0 0 0 chr4 24060841 24060862 -160227800 + AT_rich Low_complexity Low_complexity 1 21 0 525 280 133 32 chr4 24061163 24061502 -160227160 - MLT1I LTR MaLR -7 402 30 992 234 60 37 chr4 24061599 24061868 -160226794 - MLT2B1 LTR ERVL -244 276 2 1754 119 66 54 chr4 24061899 24062234 -160226428 - Tigger7 DNA MER2_type -1 2586 2248 645 192 299 0 chr4 24062236 24062413 -160226249 + Tigger7 DNA MER2_type 75 304 -2183 429 216 0 0 chr4 24062436 24062510 -160226152 - Tigger7 DNA MER2_type -265 74 1 212 194 0 0 chr4 24063213 24063249 -160225413 + (TA)n Simple_repeat Simple_repeat 2 37 0 503 184 0 0 chr4 24063267 24063343 -160225319 + AluSx SINE Alu 1 76 -237 5264 128 101 85 chr4 24063347 24064899 -160223763 - pTR5 LTR ERV1 -1 2437 743 1430 126 51 9 chr4 24064899 24065113 -160223549 + AluSx SINE Alu 71 293 -17 22 0 0 0 chr4 24065116 24065138 -160223524 + AT_rich Low_complexity Low_complexity 1 22 0 396 313 84 84 chr4 24065138 24065889 -160222773 - L1M4 LINE L1 -3240 2906 2156 266 241 0 0 chr4 24065919 24065973 -160222689 - Tigger5 DNA MER2_type -2269 54 1 399 292 7 45 chr4 24065991 24066145 -160222517 - HAL1 LINE L1 -1196 1311 1164 969 307 69 20 chr4 24067836 24068285 -160220377 + L2 LINE L2 2843 3313 0 321 172 0 0 chr4 24068368 24068426 -160220236 + Tigger4(Zombi) DNA MER2_type 1 58 -2673 237 33 0 0 chr4 24068426 24068456 -160220206 + (ATTG)n Simple_repeat Simple_repeat 2 31 0 2611 110 14 0 chr4 24068456 24068812 -160219850 - L1PB1 LINE L1 -10 6141 5781 212 100 25 0 chr4 24068812 24068852 -160219810 + (TA)n Simple_repeat Simple_repeat 2 42 0 198 103 0 0 chr4 24068851 24068880 -160219782 + (CA)n Simple_repeat Simple_repeat 2 30 0 * 2398 110 9 3 chr4 24068880 24069225 -160219437 - L1PB1 LINE L1 -360 5791 5445 4152 203 17 10 chr4 24069225 24070164 -160218498 + L1 LINE L1 3891 4836 -1310 771 145 61 0 chr4 24070277 24070408 -160218254 + Tigger4(Zombi) DNA MER2_type 2593 2731 0 1830 199 152 39 chr4 24070678 24071145 -160217517 + MLT2B1 LTR ERVL 1 520 0 461 194 0 31 chr4 24071263 24071361 -160217301 - MER94 DNA DNA -1 133 39 208 372 11 0 chr4 24071602 24071696 -160216966 + L2 LINE L2 2537 2631 -683 2924 110 30 0 chr4 24071699 24072099 -160216563 + MLT2A2 LTR ERVL 42 453 0 189 224 53 53 chr4 24072837 24072913 -160215749 + MIR SINE MIR 187 262 0 710 174 7 21 chr4 24073371 24073515 -160215147 - MSTA LTR MaLR -270 158 17 234 325 36 24 chr4 24073628 24073711 -160214951 - L2 LINE L2 -527 2787 2704 2170 109 7 10 chr4 24073728 24074030 -160214632 + AluSg SINE Alu 5 305 -5 2447 86 0 13 chr4 24074032 24074346 -160214316 + AluY SINE Alu 1 310 -1 268 313 70 42 chr4 24074405 24074760 -160213902 - L2 LINE L2 -907 2407 2043 2807 166 34 57 chr4 24074785 24075279 -160213383 - MER34C LTR ERV1 0 585 81 212 0 36 0 chr4 24075279 24075307 -160213355 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2807 166 34 57 chr4 24075307 24075373 -160213289 - MER34C LTR ERV1 -504 81 37 4793 72 7 93 chr4 24075373 24075506 -160213156 - MER4A LTR ERV1 0 664 521 2075 137 3 0 chr4 24075506 24075805 -160212857 - AluSx SINE Alu -12 300 1 4793 72 7 93 chr4 24075805 24076398 -160212264 - MER4A LTR ERV1 -143 521 1 2807 166 34 57 chr4 24076398 24076431 -160212231 - MER34C LTR ERV1 -548 37 5 393 222 9 19 chr4 24076726 24076834 -160211828 + MIR SINE MIR 150 256 -6 274 314 157 0 chr4 24076868 24076970 -160211692 + MIR3 SINE MIR 68 185 -23 216 0 0 0 chr4 24077156 24077180 -160211482 + (T)n Simple_repeat Simple_repeat 1 24 0 23 54 0 0 chr4 24078939 24078976 -160209686 + AT_rich Low_complexity Low_complexity 1 37 0 27 62 0 0 chr4 24079090 24079138 -160209524 + AT_rich Low_complexity Low_complexity 1 48 0 2186 114 0 7 chr4 24079454 24079751 -160208911 - AluSx SINE Alu -17 295 1 214 216 40 68 chr4 24080239 24080313 -160208349 + MER5A DNA MER1_type 3 74 -115 228 323 0 0 chr4 24080399 24080461 -160208201 + tRNA-Ser(Sec) tRNA tRNA 1 62 -28 411 250 174 35 chr4 24081066 24081210 -160207452 - MER91A DNA MER1_type -14 182 19 461 89 41 27 chr4 24082065 24082211 -160206451 + (TA)n Simple_repeat Simple_repeat 1 148 0 1672 177 6 22 chr4 24084661 24084977 -160203685 - AluJb SINE Alu -1 311 1 189 0 0 0 chr4 24085276 24085297 -160203365 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 1899 166 0 10 chr4 24087166 24087462 -160201200 - AluJb SINE Alu -18 294 2 2233 113 0 0 chr4 24087487 24087780 -160200882 - AluSg SINE Alu -17 293 1 23 0 0 0 chr4 24087829 24087852 -160200810 + AT_rich Low_complexity Low_complexity 1 23 0 683 279 92 23 chr4 24088101 24088455 -160200207 - L1MC4a LINE L1 -360 5804 5519 1861 124 0 22 chr4 24088508 24088781 -160199881 - AluSx SINE Alu -45 267 1 210 207 35 0 chr4 24088856 24088914 -160199748 + T-rich Low_complexity Low_complexity 4 63 0 330 312 113 87 chr4 24089622 24090013 -160198649 - L2 LINE L2 -53 3219 2819 936 141 0 15 chr4 24090219 24090354 -160198308 - FLAM_C SINE Alu 0 133 1 2076 137 3 7 chr4 24090406 24090705 -160197957 - AluSx SINE Alu -14 298 1 275 253 91 30 chr4 24090743 24090842 -160197820 - L2 LINE L2 -7 3306 3202 346 165 25 0 chr4 24090895 24090974 -160197688 + CT-rich Low_complexity Low_complexity 3 83 0 2386 62 7 0 chr4 24091017 24091307 -160197355 - AluY SINE Alu -19 292 1 375 325 43 34 chr4 24092074 24092283 -160196379 - MIR SINE MIR -46 216 6 287 258 106 68 chr4 24093245 24093377 -160195285 + L2 LINE L2 3136 3272 0 1487 187 23 40 chr4 24093895 24094195 -160194467 - AluJo SINE Alu -17 295 1 870 164 8 0 chr4 24094261 24094395 -160194267 - AluJo SINE Alu -177 135 1 1263 240 25 21 chr4 24095134 24095459 -160193203 - MLT1A2 LTR MaLR -48 326 1 220 290 0 0 chr4 24095750 24095818 -160192844 - MIR SINE MIR -65 143 86 2453 81 0 3 chr4 24095831 24096141 -160192521 - AluSc SINE Alu 0 309 1 2183 91 0 20 chr4 24096350 24096648 -160192014 - AluY SINE Alu -19 292 1 1956 168 3 0 chr4 24098746 24099056 -160189606 - AluSx SINE Alu -1 311 1 3289 199 24 30 chr4 24099291 24099478 -160189184 + L1MB7 LINE L1 3153 3340 -2806 1547 187 28 11 chr4 24099478 24099611 -160189051 + AluJb SINE Alu 1 130 -182 2325 96 10 0 chr4 24099611 24099904 -160188758 + AluSx SINE Alu 1 296 -16 1547 187 28 11 chr4 24099904 24100054 -160188608 + AluJb SINE Alu 130 289 -23 3289 199 24 30 chr4 24100054 24100673 -160187989 + L1MB7 LINE L1 3340 3954 -2192 1362 185 37 63 chr4 24100682 24101091 -160187571 + MLT1C LTR MaLR 6 390 0 5087 145 30 1 chr4 24101091 24101905 -160186757 + L1MB7 LINE L1 5332 6168 -16 492 200 25 58 chr4 24101989 24102109 -160186553 - MER21B LTR ERV1 -364 499 384 441 76 0 0 chr4 24103206 24103272 -160185390 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 559 128 186 0 chr4 24103380 24103482 -160185180 - AluSq/x SINE Alu -191 122 2 355 255 136 66 chr4 24103493 24103723 -160184939 - L1ME4a LINE L1 0 6121 5909 698 183 0 23 chr4 24103723 24103854 -160184808 + FLAM_A SINE Alu 1 128 -5 355 255 136 66 chr4 24103854 24104029 -160184633 - L1ME4a LINE L1 -212 5909 5681 1936 138 0 10 chr4 24104107 24104398 -160184264 - AluSx SINE Alu -24 288 1 2002 96 0 0 chr4 24104405 24104655 -160184007 - AluSc SINE Alu -21 288 39 324 140 0 35 chr4 24105092 24105149 -160183513 + AluJo/FLAM SINE Alu 78 132 -170 1091 189 177 4 chr4 24105152 24105406 -160183256 + AluJo SINE Alu 2 299 -3 273 98 0 0 chr4 24105414 24105455 -160183207 + (GGGGA)n Simple_repeat Simple_repeat 3 43 0 204 231 0 0 chr4 24105458 24105497 -160183165 + GA-rich Low_complexity Low_complexity 1 39 0 2316 115 0 0 chr4 24106098 24106402 -160182260 - AluSx SINE Alu -8 304 1 3441 144 91 125 chr4 24107346 24108260 -160180402 - MER21A LTR ERV1 -36 895 13 226 100 20 0 chr4 24108256 24108275 -160180387 - LTR66 LTR ERVL -169 441 424 * 348 24 0 0 chr4 24108275 24108316 -160180346 + (TG)n Simple_repeat Simple_repeat 2 42 0 226 100 20 0 chr4 24108316 24108346 -160180316 - LTR66 LTR ERVL -186 424 391 2163 115 3 0 chr4 24108706 24108994 -160179668 + AluSp SINE Alu 3 291 -22 602 255 37 30 chr4 24109220 24109423 -160179239 - MIR SINE MIR 0 262 59 1772 119 51 34 chr4 24110335 24110630 -160178032 + AluSx SINE Alu 1 300 -12 243 250 80 20 chr4 24111273 24111373 -160177289 - L2 LINE L2 -25 3247 3142 647 281 30 0 chr4 24111835 24112034 -160176628 - MIR SINE MIR 0 262 58 1396 171 150 34 chr4 24112069 24112263 -160176399 - MLT1A1 LTR MaLR 0 365 195 2250 114 0 13 chr4 24112263 24112571 -160176091 - AluSx SINE Alu -8 304 1 1396 171 150 34 chr4 24112571 24112703 -160175959 - MLT1A1 LTR MaLR -170 195 1 2724 140 17 9 chr4 24113004 24113426 -160175236 + MER61B LTR ERV1 1 425 0 976 214 0 0 chr4 24113549 24113727 -160174935 - FRAM SINE Alu -1 175 1 621 298 18 22 chr4 24113876 24114104 -160174558 - MIR SINE MIR -12 250 24 429 264 134 19 chr4 24116226 24116442 -160172220 - MIR SINE MIR -10 252 12 1289 183 87 21 chr4 24117349 24117638 -160171024 + MER58B DNA MER1_type 28 335 -6 573 183 127 31 chr4 24117864 24117877 -160170785 - L1MA10 LINE L1 0 6317 6307 1692 161 24 13 chr4 24117877 24118175 -160170487 + AluJb SINE Alu 1 301 -11 573 183 127 31 chr4 24118175 24118382 -160170280 - L1MA10 LINE L1 -10 6307 5919 2603 141 12 73 chr4 24118465 24118880 -160169782 - MER101 LTR ERV1 0 474 94 1535 142 78 25 chr4 24118880 24119161 -160169501 - AluJb SINE Alu -16 296 1 2603 141 12 73 chr4 24119161 24119250 -160169412 - MER101 LTR ERV1 -380 94 1 1935 153 10 7 chr4 24119451 24119751 -160168911 - AluSx SINE Alu -11 301 1 2162 115 0 0 chr4 24119806 24120093 -160168569 - AluSx SINE Alu -25 287 1 1475 126 25 107 chr4 24120102 24120420 -160168242 + MLT1B LTR MaLR 13 496 -91 1001 202 68 65 chr4 24120535 24120857 -160167805 + L1MD2 LINE L1 6027 6349 -10 2975 141 69 20 chr4 24121154 24121493 -160167169 + Tigger3(Golem) DNA MER2_type 1 378 -2651 1912 150 0 14 chr4 24121493 24121808 -160166854 + AluJb SINE Alu 1 311 0 2975 141 69 20 chr4 24121808 24122005 -160166657 + Tigger3(Golem) DNA MER2_type 378 564 -2465 * 9527 107 64 12 chr4 24122001 24122699 -160165963 + Tigger3(Golem) DNA MER2_type 1470 2130 -899 2193 122 0 0 chr4 24122699 24122995 -160165667 - AluJb SINE Alu -16 296 1 9527 107 64 12 chr4 24122995 24123779 -160164883 + Tigger3(Golem) DNA MER2_type 2130 3029 0 1164 196 0 14 chr4 24123858 24124072 -160164590 + AluJo SINE Alu 1 211 -101 1981 180 24 3 chr4 24125080 24125414 -160163248 - MER58B DNA MER1_type 0 341 1 2348 82 0 7 chr4 24125785 24126078 -160162584 - AluY SINE Alu -20 291 1 232 326 65 11 chr4 24130181 24130273 -160158389 - MIR SINE MIR -157 105 9 247 256 128 96 chr4 24131473 24131638 -160157024 + HAL1 LINE L1 1161 1319 -1188 2343 92 7 0 chr4 24131638 24131941 -160156721 + AluSx SINE Alu 1 305 -7 247 256 128 96 chr4 24131941 24132145 -160156517 + HAL1 LINE L1 1319 1550 -957 2352 119 0 0 chr4 24132145 24132457 -160156205 + AluSx SINE Alu 1 312 0 247 256 128 96 chr4 24132457 24132546 -160156116 + HAL1 LINE L1 1550 1635 -872 1573 103 121 40 chr4 24132637 24132909 -160155753 + AluSg1 SINE Alu 3 296 -13 2103 118 14 3 chr4 24132951 24133247 -160155415 + AluSq SINE Alu 1 299 -14 452 284 129 64 chr4 24133854 24134022 -160154640 - HAL1 LINE L1 -629 1878 1722 2318 98 0 0 chr4 24134022 24134319 -160154343 - AluSg SINE Alu -13 297 1 452 284 129 64 chr4 24134319 24134600 -160154062 - HAL1 LINE L1 -785 1722 1400 513 83 42 21 chr4 24134602 24134746 -160153916 + (TA)n Simple_repeat Simple_repeat 2 148 0 418 274 47 102 chr4 24134750 24135348 -160153314 - HAL1 LINE L1 -1133 1374 810 1676 131 3 53 chr4 24135874 24136156 -160152506 - AluSq SINE Alu -45 268 1 23 0 0 0 chr4 24136317 24136340 -160152322 + AT_rich Low_complexity Low_complexity 1 23 0 304 311 15 8 chr4 24136623 24136755 -160151907 + MER5B DNA MER1_type 2 134 -44 2174 103 7 3 chr4 24137293 24137595 -160151067 + AluSx SINE Alu 6 308 -4 1217 142 18 36 chr4 24138347 24138566 -160150096 - L1MA5 LINE L1 -85 6215 6001 234 0 0 0 chr4 24139067 24139093 -160149569 + (CA)n Simple_repeat Simple_repeat 2 27 0 1828 139 20 20 chr4 24139254 24139426 -160149236 - AluJb SINE Alu -18 294 120 2121 97 73 0 chr4 24139426 24139714 -160148948 + AluSx SINE Alu 1 309 -3 1828 139 20 20 chr4 24139714 24139835 -160148827 - AluJb SINE Alu -191 121 1 327 232 22 103 chr4 24140152 24140337 -160148325 + MIR3 SINE MIR 30 199 -9 512 120 0 11 chr4 24140910 24141002 -160147660 + (CA)n Simple_repeat Simple_repeat 2 92 0 332 212 61 38 chr4 24141254 24141369 -160147293 + L1MC4a LINE L1 5874 5994 -1814 694 203 0 15 chr4 24141369 24141502 -160147160 + FLAM_A SINE Alu 1 131 -2 332 212 61 38 chr4 24141502 24141518 -160147144 + L1MC4a LINE L1 5994 6008 -1800 259 260 50 44 chr4 24141682 24141863 -160146799 - L1ME4a LINE L1 -58 6063 5882 545 263 20 40 chr4 24141917 24141990 -160146672 - L1ME4a LINE L1 -225 5896 5823 2173 133 0 0 chr4 24141990 24142291 -160146371 - AluSx SINE Alu -11 301 1 545 263 20 40 chr4 24142291 24142415 -160146247 - L1ME4a LINE L1 -298 5823 5703 494 91 0 0 chr4 24142415 24142492 -160146170 + Alu SINE Alu 234 310 -2 24 32 0 0 chr4 24142988 24143019 -160145643 + AT_rich Low_complexity Low_complexity 1 31 0 365 118 9 173 chr4 24143364 24143474 -160145188 - LTR9 LTR ERV1 -83 529 438 1942 139 17 0 chr4 24144268 24144556 -160144106 + AluSx SINE Alu 1 293 -19 1821 150 59 3 chr4 24144628 24144914 -160143748 - AluJb SINE Alu -8 304 3 26 0 0 0 chr4 24145081 24145107 -160143555 + AT_rich Low_complexity Low_complexity 1 26 0 2037 55 0 27 chr4 24145107 24145363 -160143299 - AluY SINE Alu -4 307 59 650 69 11 0 chr4 24145364 24145451 -160143211 - MSTA LTR MaLR -340 88 1 2215 154 22 6 chr4 24146220 24146578 -160142084 + THE1B LTR MaLR 1 364 0 10266 108 35 39 chr4 24146578 24148163 -160140499 + THE1B-int LTR MaLR 1 1580 0 2119 159 31 6 chr4 24148167 24148518 -160140144 + THE1B LTR MaLR 5 364 0 2264 131 6 11 chr4 24148628 24148980 -160139682 - Tigger7 DNA MER2_type 0 2487 2138 753 195 0 0 chr4 24148977 24149095 -160139567 - Tigger7 DNA MER2_type -2369 118 1 * 358 280 15 38 chr4 24149487 24149619 -160139043 - MIR SINE MIR -74 188 60 1888 170 52 19 chr4 24149622 24149987 -160138675 + MLT2B1 LTR ERVL 4 380 -140 237 37 0 0 chr4 24149978 24150005 -160138657 + MLT2B1 LTR ERVL 494 520 0 * 195 268 31 52 chr4 24151287 24151384 -160137278 - MIR SINE MIR -86 176 82 195 353 46 46 chr4 24152226 24152399 -160136263 + L2 LINE L2 2417 2589 -725 * 16467 181 5 11 chr4 24152395 24155472 -160133190 + HERVH LTR ERV1 4656 7713 0 509 252 68 34 chr4 24155755 24155961 -160132701 + LTR7 LTR ERV1 238 450 0 398 307 17 28 chr4 24156365 24156541 -160132121 + L2 LINE L2 3117 3290 -23 673 292 93 16 chr4 24156559 24156804 -160131858 - MIR SINE MIR -1 261 4 1121 235 24 8 chr4 24157012 24157263 -160131399 - AluJo SINE Alu -57 255 1 24 67 0 0 chr4 24157872 24157917 -160130745 + AT_rich Low_complexity Low_complexity 1 45 0 484 285 181 14 chr4 24158467 24158688 -160129974 + MIR SINE MIR 4 261 -1 1994 107 7 0 chr4 24159177 24159448 -160129214 + AluSq SINE Alu 38 310 -3 380 294 14 41 chr4 24159743 24159889 -160128773 + L1ME LINE L1 5518 5659 -462 425 223 48 0 chr4 24160556 24160659 -160128003 + MIR SINE MIR 82 189 -73 450 303 25 0 chr4 24160845 24160964 -160127698 - LTR16A LTR ERVL -88 362 241 4016 171 23 8 chr4 24161496 24162200 -160126462 - MER72 LTR ERV1 0 722 9 402 139 14 14 chr4 24162628 24162700 -160125962 + AluS SINE Alu 3 74 -227 278 105 0 0 chr4 24162681 24162719 -160125943 - Tigger3b DNA MER2_type -719 513 476 * 2684 205 8 17 chr4 24162724 24163250 -160125412 - Tigger3b DNA MER2_type -703 528 8 27 62 0 0 chr4 24163718 24163766 -160124896 + AT_rich Low_complexity Low_complexity 1 48 0 343 293 98 46 chr4 24164162 24164469 -160124193 + L1M4 LINE L1 3166 3488 -2658 198 0 0 0 chr4 24164817 24164839 -160123823 + (T)n Simple_repeat Simple_repeat 1 22 0 423 323 35 28 chr4 24165070 24165324 -160123338 + L1M4 LINE L1 3589 3844 -2302 208 196 36 0 chr4 24165325 24165381 -160123281 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 242 264 184 24 chr4 24165392 24165464 -160123198 + L1M4 LINE L1 3859 3918 -2228 1357 241 22 17 chr4 24165464 24165821 -160122841 + MLT1A1 LTR MaLR 3 361 -4 242 264 184 24 chr4 24165821 24165960 -160122702 + L1M4 LINE L1 3918 4104 -2042 242 333 0 11 chr4 24166720 24166807 -160121855 + GA-rich Low_complexity Low_complexity 3 88 0 678 316 53 19 chr4 24167103 24167514 -160121148 - L1ME LINE L1 -417 5822 5398 362 315 98 33 chr4 24167517 24167968 -160120694 - L1ME LINE L1 -3265 2950 2471 354 271 113 30 chr4 24168200 24168403 -160120259 - L1ME LINE L1 -4144 2252 2033 288 0 0 0 chr4 24168476 24168508 -160120154 + (TC)n Simple_repeat Simple_repeat 1 32 0 35 24 0 0 chr4 24168943 24168985 -160119677 + AT_rich Low_complexity Low_complexity 1 42 0 374 329 27 27 chr4 24169004 24169126 -160119536 + MIR SINE MIR 19 143 -119 276 30 0 0 chr4 24169126 24169159 -160119503 + (TAA)n Simple_repeat Simple_repeat 3 35 0 374 329 27 27 chr4 24169159 24169182 -160119480 + MIR SINE MIR 142 164 -98 2403 116 50 31 chr4 24169427 24169849 -160118813 - MER57B LTR ERV1 0 434 5 305 295 9 0 chr4 24169853 24169958 -160118704 - L1ME LINE L1 -5308 897 792 496 372 26 50 chr4 24170200 24170582 -160118080 - L1ME LINE L1 -5746 459 87 827 264 98 37 chr4 24172775 24173123 -160115539 - L2 LINE L2 -56 3257 2889 670 328 40 37 chr4 24173120 24173371 -160115291 - L2 LINE L2 -861 2453 2199 * 225 0 0 0 chr4 24173371 24173396 -160115266 + (TG)n Simple_repeat Simple_repeat 2 26 0 670 328 40 37 chr4 24173396 24173495 -160115167 - L2 LINE L2 -1115 2199 2102 661 294 15 64 chr4 24173496 24173826 -160114836 + Charlie2 DNA MER1_type 9 322 -2540 607 264 124 8 chr4 24173833 24174083 -160114579 + Charlie2 DNA MER1_type 1870 2148 -714 696 244 75 137 chr4 24174094 24174611 -160114051 - L2 LINE L2 -1794 1520 1036 14847 167 19 11 chr4 24174704 24176442 -160112220 - L1MA3 LINE L1 0 7724 6002 2780 77 40 64 chr4 24176442 24176528 -160112134 - MLT2A1 LTR ERVL 0 444 357 207 0 0 0 chr4 24176528 24176551 -160112111 + (TA)n Simple_repeat Simple_repeat 1 23 0 2780 77 40 64 chr4 24176551 24176919 -160111743 - MLT2A1 LTR ERVL -87 357 1 14847 167 19 11 chr4 24176919 24180877 -160107785 - L1MA3 LINE L1 -1722 6002 1977 470 314 81 23 chr4 24180942 24181114 -160107548 + MIR SINE MIR 81 262 0 191 320 0 0 chr4 24181306 24181356 -160107306 - L2 LINE L2 -245 3027 2978 1668 194 3 3 chr4 24181446 24181740 -160106922 + AluJb SINE Alu 1 294 -18 21 36 0 0 chr4 24181745 24181773 -160106889 + AT_rich Low_complexity Low_complexity 1 28 0 1672 229 62 33 chr4 24182687 24183172 -160105490 + MLT1D LTR MaLR 5 503 -2 351 209 55 82 chr4 24184560 24184670 -160103992 - MLT1H LTR MaLR -27 522 409 900 269 9 0 chr4 24184997 24185213 -160103449 + MER8 DNA MER2_type 1 218 -21 1225 224 107 68 chr4 24186047 24186793 -160101869 + Zaphod DNA AcHobo 544 1318 -2713 1121 83 7 0 chr4 24186841 24186985 -160101677 - AluSp SINE Alu -168 145 1 1310 236 89 126 chr4 24186988 24187395 -160101267 + Zaphod DNA AcHobo 1545 1965 -2066 2092 112 0 3 chr4 24187395 24187704 -160100958 + AluY SINE Alu 1 308 0 1310 236 89 126 chr4 24187704 24188250 -160100412 + Zaphod DNA AcHobo 1965 2453 -1578 2392 72 0 0 chr4 24188250 24188543 -160100119 + AluSp SINE Alu 1 293 -20 1310 236 89 126 chr4 24188543 24188732 -160099930 + Zaphod DNA AcHobo 2453 2647 -1384 309 288 75 14 chr4 24188770 24188916 -160099746 + Zaphod DNA AcHobo 3005 3159 -872 556 109 16 78 chr4 24188916 24189044 -160099618 - L1MB8 LINE L1 0 6178 6059 2347 90 0 7 chr4 24189052 24189362 -160099300 - AluSp SINE Alu -5 308 1 3726 177 60 41 chr4 24189375 24190218 -160098444 - L1MB7 LINE L1 -7 6177 5319 1331 184 20 44 chr4 24190225 24190518 -160098144 - AluJo SINE Alu -26 286 1 1691 236 104 20 chr4 24190538 24191271 -160097391 + Zaphod DNA AcHobo 3150 3943 -88 24 53 0 0 chr4 24191271 24191309 -160097353 + AT_rich Low_complexity Low_complexity 1 38 0 950 284 113 11 chr4 24192309 24192679 -160095983 + MLT1I LTR MaLR 2 409 0 197 176 0 20 chr4 24193486 24193537 -160095125 + (TA)n Simple_repeat Simple_repeat 2 51 0 407 247 10 0 chr4 24194242 24194339 -160094323 - L1MD2 LINE L1 -14 6345 6248 379 232 24 0 chr4 24194395 24194477 -160094185 + MER5B DNA MER1_type 2 85 -93 1230 249 76 32 chr4 24194489 24194899 -160093763 + MLT2B1 LTR ERVL 1 428 -92 30 97 0 0 chr4 24194968 24195061 -160093601 + AT_rich Low_complexity Low_complexity 1 93 0 244 191 29 15 chr4 24195065 24195133 -160093529 + MLT2A1 LTR ERVL 368 436 -8 255 299 30 0 chr4 24195137 24195204 -160093458 + MER5B DNA MER1_type 103 171 -7 300 102 0 0 chr4 24195250 24195299 -160093363 + (TG)n Simple_repeat Simple_repeat 2 50 0 320 260 73 0 chr4 24195947 24196043 -160092619 - MLT1J2 LTR MaLR -323 127 25 759 252 128 4 chr4 24196479 24196705 -160091957 - MIR SINE MIR -4 258 5 477 242 67 0 chr4 24196741 24196861 -160091801 - L1MD2 LINE L1 -16 6343 6216 2549 243 23 17 chr4 24196928 24197573 -160091089 - L1MD2 LINE L1 -279 6080 5432 257 322 34 35 chr4 24197626 24197817 -160090845 + MIR SINE MIR 34 222 -40 1139 179 40 10 chr4 24197855 24198020 -160090642 - AluJb SINE Alu -17 295 121 243 0 0 0 chr4 24198020 24198047 -160090615 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1139 179 40 10 chr4 24198047 24198082 -160090580 - AluJb SINE Alu -191 121 89 325 302 24 8 chr4 24198299 24198425 -160090237 - MIR3 SINE MIR -5 203 76 1175 263 76 3 chr4 24199021 24199215 -160089447 - L1MD2 LINE L1 -21 6338 6160 231 36 0 0 chr4 24199215 24199243 -160089419 + (TG)n Simple_repeat Simple_repeat 2 29 0 1175 263 76 3 chr4 24199243 24199417 -160089245 - L1MD2 LINE L1 -199 6160 5943 * 2897 197 71 16 chr4 24199415 24199502 -160089160 - L1MDa LINE L1 -3689 2851 2770 1627 134 46 31 chr4 24199502 24199763 -160088899 - AluSx SINE Alu -6 306 42 2897 197 71 16 chr4 24199763 24200546 -160088116 - L1MDa LINE L1 -3770 2770 1917 1382 246 33 33 chr4 24200543 24200942 -160087720 - L1MDa LINE L1 -5359 1184 786 * 306 298 112 17 chr4 24201123 24201301 -160087361 - L1MDa LINE L1 -6319 221 27 181 210 40 110 chr4 24201308 24201408 -160087254 - MIR SINE MIR -46 216 124 622 249 122 33 chr4 24202238 24202451 -160086211 + MIR SINE MIR 31 262 0 183 138 0 0 chr4 24202444 24202473 -160086189 - MIR SINE MIR -108 154 126 * 1134 229 62 43 chr4 24202783 24203154 -160085508 + MER58D DNA MER1_type 1 378 -8 621 341 67 5 chr4 24203939 24204162 -160084500 + MIR SINE MIR 26 262 0 254 308 84 42 chr4 24204162 24204305 -160084357 - MIR3 SINE MIR -17 191 43 212 313 40 10 chr4 24204642 24204741 -160083921 - MIR SINE MIR -3 259 158 776 246 11 11 chr4 24205093 24205280 -160083382 - MER5A DNA MER1_type -1 188 2 242 281 18 18 chr4 24205527 24205584 -160083078 + MIR SINE MIR 30 86 -122 23 0 0 0 chr4 24206723 24206746 -160081916 + AT_rich Low_complexity Low_complexity 1 23 0 181 171 171 0 chr4 24207373 24207408 -160081254 - L2 LINE L2 -31 3282 3242 240 100 0 0 chr4 24208661 24208701 -160079961 + (CGG)n Simple_repeat Simple_repeat 2 41 0 21 0 0 0 chr4 24213424 24213445 -160075217 + AT_rich Low_complexity Low_complexity 1 21 0 222 233 192 0 chr4 24214286 24214359 -160074303 - MER5A DNA MER1_type -77 112 26 24 67 0 0 chr4 24215032 24215077 -160073585 + AT_rich Low_complexity Low_complexity 1 45 0 25 31 0 0 chr4 24215514 24215546 -160073116 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr4 24216678 24216708 -160071954 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 24217123 24217151 -160071511 + AT_rich Low_complexity Low_complexity 1 28 0 295 345 18 0 chr4 24217520 24217633 -160071029 + CT-rich Low_complexity Low_complexity 5 119 0 340 302 124 7 chr4 24220312 24220481 -160068181 + MIR SINE MIR 66 252 -10 24 53 0 0 chr4 24220836 24220874 -160067788 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr4 24221898 24221927 -160066735 + AT_rich Low_complexity Low_complexity 1 29 0 300 315 28 0 chr4 24222645 24222753 -160065909 + MIR SINE MIR 128 238 -24 286 314 132 66 chr4 24223308 24223642 -160065020 - L2 LINE L2 -36 3236 2881 450 347 139 24 chr4 24224143 24224431 -160064231 - L3 LINE CR1 -15 1562 1242 347 132 59 7 chr4 24228020 24228172 -160060490 + (TA)n Simple_repeat Simple_repeat 1 160 0 423 250 23 17 chr4 24229862 24230034 -160058628 - L1ME4a LINE L1 0 6121 5949 215 290 14 14 chr4 24230073 24230142 -160058520 + L2 LINE L2 3203 3271 -1 254 348 25 8 chr4 24231930 24232048 -160056614 + MIR SINE MIR 52 171 -91 32 0 0 0 chr4 24232655 24232687 -160055975 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 24233019 24233040 -160055622 + AT_rich Low_complexity Low_complexity 1 21 0 35 0 0 0 chr4 24234023 24234058 -160054604 + AT_rich Low_complexity Low_complexity 1 35 0 700 223 13 6 chr4 24234392 24234549 -160054113 + Tigger3(Golem) DNA MER2_type 128 285 -2744 21 0 0 0 chr4 24234656 24234677 -160053985 + AT_rich Low_complexity Low_complexity 1 21 0 206 32 32 0 chr4 24235530 24235561 -160053101 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 495 317 73 19 chr4 24236438 24236643 -160052019 + MIR SINE MIR 24 239 -23 2552 62 0 0 chr4 24236951 24237255 -160051407 + AluY SINE Alu 1 304 -7 183 380 14 0 chr4 24237387 24237458 -160051204 + L2 LINE L2 3198 3269 -44 2371 90 0 0 chr4 24237734 24238033 -160050629 - AluSp SINE Alu -14 299 1 22 56 0 0 chr4 24239405 24239441 -160049221 + AT_rich Low_complexity Low_complexity 1 36 0 263 283 79 13 chr4 24239490 24239642 -160049020 - MER103 DNA DNA -1 165 4 216 0 0 0 chr4 24240021 24240045 -160048617 + (CA)n Simple_repeat Simple_repeat 1 24 0 21 36 0 0 chr4 24240651 24240679 -160047983 + AT_rich Low_complexity Low_complexity 1 28 0 1727 192 14 0 chr4 24242451 24242748 -160045914 - AluJb SINE Alu -11 301 1 257 248 248 46 chr4 24242863 24243016 -160045646 - MIR SINE MIR -36 226 43 2061 121 4 4 chr4 24243420 24243701 -160044961 + AluSx SINE Alu 1 281 -31 255 340 0 47 chr4 24243818 24243924 -160044738 - MIR SINE MIR -99 163 63 284 279 39 47 chr4 24244627 24244756 -160043906 + L2 LINE L2 3182 3309 -4 281 267 172 0 chr4 24245177 24245293 -160043369 + MIR SINE MIR 117 252 -10 262 259 24 12 chr4 24245554 24245639 -160043023 - MLT1L LTR MaLR -23 592 507 192 254 51 0 chr4 24246479 24246538 -160042124 - MIR SINE MIR -70 192 131 461 267 30 67 chr4 24246542 24246677 -160041985 + L2 LINE L2 3179 3308 -5 333 273 62 150 chr4 24246802 24247150 -160041512 + L2 LINE L2 2825 3119 -153 1262 181 96 63 chr4 24247150 24247482 -160041180 - MER2 DNA MER2_type 0 344 2 333 273 62 150 chr4 24247482 24247621 -160041041 + L2 LINE L2 3119 3269 -3 364 314 138 42 chr4 24247816 24248077 -160040585 + L2 LINE L2 2987 3272 0 316 280 0 40 chr4 24248240 24248315 -160040347 + MER91A DNA MER1_type 22 93 -103 288 0 0 0 chr4 24248348 24248380 -160040282 + (TA)n Simple_repeat Simple_repeat 2 33 0 261 0 0 0 chr4 24248380 24248409 -160040253 + (T)n Simple_repeat Simple_repeat 1 29 0 235 264 14 43 chr4 24248509 24248649 -160040013 + Charlie7 DNA MER1_type 2471 2606 -6 354 45 0 0 chr4 24248790 24248834 -160039828 + (TG)n Simple_repeat Simple_repeat 1 44 0 309 304 81 20 chr4 24249137 24249285 -160039377 + MIR SINE MIR 20 176 -86 485 170 10 30 chr4 24249286 24249386 -160039276 + FLAM_A SINE Alu 31 128 -14 2062 147 0 3 chr4 24250951 24251250 -160037412 + AluSx SINE Alu 3 300 -12 311 389 15 15 chr4 24251706 24251904 -160036758 + L3 LINE CR1 1094 1291 -286 27 0 0 0 chr4 24252621 24252648 -160036014 + AT_rich Low_complexity Low_complexity 1 27 0 27 29 0 0 chr4 24254059 24254093 -160034569 + AT_rich Low_complexity Low_complexity 1 34 0 2398 88 0 0 chr4 24254966 24255272 -160033390 - AluSp SINE Alu -7 306 1 21 57 0 0 chr4 24256162 24256197 -160032465 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr4 24257015 24257037 -160031625 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 24257344 24257366 -160031296 + AT_rich Low_complexity Low_complexity 1 22 0 222 278 0 0 chr4 24257462 24257516 -160031146 + (CA)n Simple_repeat Simple_repeat 1 54 0 28 29 0 0 chr4 24258063 24258098 -160030564 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr4 24259919 24259947 -160028715 + AT_rich Low_complexity Low_complexity 1 28 0 214 267 107 69 chr4 24260967 24261098 -160027564 + L2 LINE L2 3178 3313 0 223 204 20 0 chr4 24261152 24261201 -160027461 + GA-rich Low_complexity Low_complexity 2 51 0 239 273 78 7 chr4 24261311 24261438 -160027224 + MLT1I LTR MaLR 22 168 -241 324 315 19 9 chr4 24261501 24261609 -160027053 + MLT1G1 LTR MaLR 246 354 -241 263 238 4 26 chr4 24261696 24261784 -160026878 + MLT1H1 LTR MaLR 491 584 -6 2153 100 7 0 chr4 24262476 24262801 -160025861 + AluSx SINE Alu 3 329 0 181 333 48 38 chr4 24263569 24263674 -160024988 + L2 LINE L2 2920 3025 -247 28 29 0 0 chr4 24263788 24263823 -160024839 + AT_rich Low_complexity Low_complexity 1 35 0 251 178 0 14 chr4 24263891 24263964 -160024698 + CT-rich Low_complexity Low_complexity 1 72 0 891 174 0 0 chr4 24264001 24264179 -160024483 + CT-rich Low_complexity Low_complexity 3 180 0 1352 188 29 11 chr4 24264185 24264457 -160024205 - AluJo SINE Alu -35 277 1 497 266 75 49 chr4 24264578 24264804 -160023858 - MIR SINE MIR -6 256 25 189 371 52 21 chr4 24264831 24264928 -160023734 - L2 LINE L2 -32 3281 3182 453 297 51 29 chr4 24265368 24265543 -160023119 + MIR SINE MIR 14 192 -70 2486 58 0 6 chr4 24266648 24266959 -160021703 - AluY SINE Alu -2 309 1 1445 209 3 17 chr4 24267791 24268087 -160020575 - AluJo SINE Alu -20 292 1 23 68 0 0 chr4 24269336 24269380 -160019282 + AT_rich Low_complexity Low_complexity 1 44 0 2203 119 3 7 chr4 24269390 24269700 -160018962 + AluSc SINE Alu 1 309 0 2425 173 9 2 chr4 24270017 24270438 -160018224 - MSTB LTR MaLR 0 426 3 1704 151 63 3 chr4 24270515 24270833 -160017829 - MER1B DNA MER1_type 0 337 1 300 326 118 7 chr4 24271013 24271148 -160017514 + MIR SINE MIR 1 150 -112 334 273 71 10 chr4 24271329 24271428 -160017234 - L2 LINE L2 -18 3295 3191 376 292 79 39 chr4 24271589 24271894 -160016768 + L1M4 LINE L1 5266 5582 -596 38 0 0 0 chr4 24271903 24271941 -160016721 + AT_rich Low_complexity Low_complexity 1 38 0 31 26 0 0 chr4 24273528 24273566 -160015096 + AT_rich Low_complexity Low_complexity 1 38 0 357 263 139 7 chr4 24274409 24274546 -160014116 + MIR SINE MIR 37 191 -71 232 246 18 0 chr4 24276536 24276593 -160012069 + L2 LINE L2 3256 3313 0 201 59 88 0 chr4 24276699 24276733 -160011929 + A-rich Low_complexity Low_complexity 2 38 0 302 257 51 105 chr4 24277216 24277369 -160011293 + MIR SINE MIR 16 158 -61 1487 142 150 0 chr4 24277779 24278059 -160010603 + AluSx SINE Alu 1 317 0 563 207 25 0 chr4 24278770 24278891 -160009771 + MER5A DNA MER1_type 1 124 -65 1527 142 40 98 chr4 24279052 24279398 -160009264 - MER4A LTR ERV1 0 664 339 316 292 10 10 chr4 24279876 24279972 -160008690 - MIR SINE MIR -50 212 117 222 302 0 16 chr4 24280732 24280795 -160007867 + L2 LINE L2 3203 3264 -8 818 205 49 19 chr4 24281450 24281655 -160007007 + L1MA8 LINE L1 6059 6269 -22 628 200 0 61 chr4 24281659 24281766 -160006896 + L1MA10 LINE L1 6170 6265 -69 332 66 279 0 chr4 24281766 24281827 -160006835 + MADE1 DNA Mariner 3 80 0 628 200 0 61 chr4 24281827 24281884 -160006778 + L1MA10 LINE L1 6265 6324 -10 305 285 32 32 chr4 24281914 24282037 -160006625 + CT-rich Low_complexity Low_complexity 5 127 0 216 0 0 0 chr4 24283645 24283669 -160004993 + (T)n Simple_repeat Simple_repeat 1 24 0 187 370 0 0 chr4 24284008 24284089 -160004573 + L2 LINE L2 2190 2270 -1044 21 57 0 0 chr4 24284590 24284625 -160004037 + AT_rich Low_complexity Low_complexity 1 35 0 250 226 0 65 chr4 24285755 24285817 -160002845 + MER4-int LTR ERV1 1105 1162 -5436 297 297 38 65 chr4 24286038 24286223 -160002439 - L2 LINE L2 0 3313 3134 21 89 0 0 chr4 24286249 24286305 -160002357 + AT_rich Low_complexity Low_complexity 1 56 0 203 316 0 0 chr4 24286877 24286956 -160001706 + T-rich Low_complexity Low_complexity 1 79 0 229 242 53 53 chr4 24288406 24288501 -160000161 - MIR SINE MIR 0 262 168 1870 201 38 2 chr4 24288511 24288929 -159999733 - L1MB7 LINE L1 0 6184 5752 476 163 38 3 chr4 24339124 24339228 -159949434 - L1MC2 LINE L1 0 6333 6226 193 262 0 0 chr4 24339247 24339289 -159949373 - L3 LINE CR1 -480 1097 1056 40 37 0 0 chr4 24340522 24340576 -159948086 + AT_rich Low_complexity Low_complexity 1 54 0 25 65 0 0 chr4 24340649 24340695 -159947967 + AT_rich Low_complexity Low_complexity 1 46 0 744 262 37 0 chr4 24340763 24340950 -159947712 + MIR SINE MIR 32 225 -37 408 353 140 39 chr4 24341628 24342200 -159946462 - L2 LINE L2 -618 2696 2067 456 252 129 7 chr4 24343139 24343294 -159945368 + MIR SINE MIR 83 256 -6 35 41 0 0 chr4 24343350 24343399 -159945263 + AT_rich Low_complexity Low_complexity 1 49 0 22 56 0 0 chr4 24344331 24344367 -159944295 + AT_rich Low_complexity Low_complexity 1 36 0 213 65 0 0 chr4 24345039 24345070 -159943592 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 180 77 0 0 chr4 24345318 24345344 -159943318 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 422 289 223 9 chr4 24345765 24345976 -159942686 + MIR SINE MIR 7 262 0 32 0 0 0 chr4 24346849 24346881 -159941781 + AT_rich Low_complexity Low_complexity 1 32 0 1181 265 53 52 chr4 24347125 24347987 -159940675 + L1ME LINE L1 4888 5759 -411 6453 84 10 37 chr4 24349312 24350482 -159938180 - L1PA11 LINE L1 -8 6166 5029 2388 76 6 22 chr4 24350482 24350797 -159937865 - AluSx SINE Alu -2 310 1 6453 84 10 37 chr4 24350797 24351414 -159937248 - L1PA11 LINE L1 -1145 5029 4397 503 280 33 22 chr4 24351556 24351738 -159936924 - MIR SINE MIR -64 198 15 437 296 43 37 chr4 24351791 24351953 -159936709 - MIR SINE MIR -93 169 7 724 199 11 11 chr4 24352891 24353067 -159935595 - L1MB7 LINE L1 -1 6183 6008 271 260 65 0 chr4 24353070 24353147 -159935515 - L1M4 LINE L1 -1242 5140 5059 767 253 12 8 chr4 24353154 24353399 -159935263 - L1M4 LINE L1 -1437 4945 4700 * 1897 237 110 60 chr4 24353368 24355283 -159933379 - L1M4 LINE L1 -3143 3239 1221 2460 59 0 0 chr4 24355373 24355677 -159932985 + AluY SINE Alu 1 304 -7 297 166 0 70 chr4 24355979 24356070 -159932592 - MIR SINE MIR -23 185 106 1472 182 101 46 chr4 24356388 24356756 -159931906 - MLT1B LTR MaLR 0 390 3 232 328 39 42 chr4 24357247 24357383 -159931279 + MIR SINE MIR 14 153 -55 183 156 0 0 chr4 24357661 24357693 -159930969 + (TA)n Simple_repeat Simple_repeat 2 33 0 229 300 0 0 chr4 24357693 24357783 -159930879 - L1MC4 LINE L1 -1339 6703 6614 1904 100 8 0 chr4 24357790 24358039 -159930623 - AluSc SINE Alu -36 273 23 189 296 93 68 chr4 24358040 24358320 -159930342 + L2 LINE L2 2946 3232 -81 31 26 0 0 chr4 24359515 24359553 -159929109 + AT_rich Low_complexity Low_complexity 1 38 0 475 338 48 13 chr4 24359737 24359911 -159928751 + MIR SINE MIR 21 206 -56 387 0 0 0 chr4 24359911 24359954 -159928708 + (TG)n Simple_repeat Simple_repeat 2 44 0 475 338 48 13 chr4 24359954 24360007 -159928655 + MIR SINE MIR 206 256 -6 243 270 48 0 chr4 24360624 24360687 -159927975 - L2 LINE L2 0 3313 3248 25 0 0 0 chr4 24360718 24360743 -159927919 + AT_rich Low_complexity Low_complexity 1 25 0 261 295 124 0 chr4 24360758 24360863 -159927799 - MIR SINE MIR -50 212 95 277 207 24 12 chr4 24360867 24360949 -159927713 + GA-rich Low_complexity Low_complexity 3 85 0 1451 234 39 12 chr4 24360951 24361284 -159927378 + MLT1A2 LTR MaLR 33 374 0 283 159 0 58 chr4 24362691 24362760 -159925902 + MER116 DNA Mariner 11 75 -5 358 291 250 16 chr4 24362772 24363088 -159925574 - L2 LINE L2 -94 3219 2830 28 0 0 0 chr4 24363668 24363696 -159924966 + AT_rich Low_complexity Low_complexity 1 28 0 229 147 0 0 chr4 24365574 24365635 -159923027 + Alu SINE Alu 247 307 0 372 269 65 0 chr4 24366302 24366395 -159922267 + L2 LINE L2 3142 3240 -32 439 322 71 0 chr4 24367054 24367237 -159921425 - MIR SINE MIR -62 200 5 536 310 132 53 chr4 24369634 24370172 -159918490 - L2 LINE L2 -1 3312 2734 252 0 0 0 chr4 24371623 24371651 -159917011 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 201 74 0 0 chr4 24372179 24372206 -159916456 + (TC)n Simple_repeat Simple_repeat 2 28 0 201 197 0 0 chr4 24372205 24372271 -159916391 + (TG)n Simple_repeat Simple_repeat 1 66 0 213 65 0 0 chr4 24372304 24372335 -159916327 + (GGAA)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr4 24372766 24372787 -159915875 + AT_rich Low_complexity Low_complexity 1 21 0 2300 92 7 3 chr4 24374448 24374754 -159913908 + AluSp SINE Alu 1 307 -6 197 402 10 0 chr4 24374993 24375090 -159913572 - L2 LINE L2 -666 2648 2551 312 281 96 15 chr4 24375249 24375384 -159913278 - L1ME LINE L1 -336 5785 5640 187 295 144 22 chr4 24375529 24375668 -159912994 - L2 LINE L2 -11 3302 3147 197 200 0 0 chr4 24376236 24376276 -159912386 - L2 LINE L2 -20 3252 3213 785 284 18 0 chr4 24376850 24377068 -159911594 + MER58A DNA MER1_type 3 224 0 385 230 11 11 chr4 24377206 24377293 -159911369 + MIR SINE MIR 165 251 -11 2076 268 73 39 chr4 24377304 24377575 -159911087 + L2 LINE L2 2170 2430 -883 1561 204 3 3 chr4 24377575 24377864 -159910798 + AluJb SINE Alu 1 289 -23 2529 67 0 10 chr4 24377873 24378186 -159910476 + AluY SINE Alu 1 310 -1 2076 268 73 39 chr4 24378186 24378477 -159910185 + L2 LINE L2 2437 2717 -596 2216 129 25 25 chr4 24378477 24378841 -159909821 - THE1B LTR MaLR 0 364 1 2076 268 73 39 chr4 24378841 24379357 -159909305 + L2 LINE L2 2717 3309 -4 1987 184 54 31 chr4 24379485 24379931 -159908731 - MLT1C LTR MaLR 0 467 12 279 360 117 9 chr4 24380034 24380145 -159908517 - L2 LINE L2 -16 3256 3134 374 114 14 0 chr4 24381727 24381797 -159906865 + (TC)n Simple_repeat Simple_repeat 2 72 0 21 36 0 0 chr4 24382179 24382207 -159906455 + AT_rich Low_complexity Low_complexity 1 28 0 2482 59 0 16 chr4 24382480 24382786 -159905876 + AluY SINE Alu 1 301 -10 243 0 0 0 chr4 24383825 24383852 -159904810 + (A)n Simple_repeat Simple_repeat 1 27 0 213 267 44 0 chr4 24383907 24383952 -159904710 - L2 LINE L2 -23 3290 3244 189 346 0 0 chr4 24386023 24386075 -159902587 + MIR SINE MIR 49 100 -162 315 261 134 28 chr4 24386235 24386377 -159902285 - L3b LINE CR1 -248 1335 1179 1789 147 3 64 chr4 24388549 24388863 -159899799 - AluSx SINE Alu -17 295 1 2280 104 0 0 chr4 24388880 24389178 -159899484 - AluSc SINE Alu -11 298 1 33 56 0 0 chr4 24389299 24389353 -159899309 + AT_rich Low_complexity Low_complexity 1 54 0 2340 94 7 0 chr4 24389642 24389949 -159898713 - AluSg SINE Alu -1 309 1 195 213 85 0 chr4 24392468 24392515 -159896147 + L2 LINE L2 3201 3251 -62 * 376 287 84 6 chr4 24392501 24392668 -159895994 + MIR SINE MIR 61 240 -22 566 246 69 69 chr4 24393700 24393903 -159894759 - MIR SINE MIR -2 260 58 518 299 161 0 chr4 24394004 24394221 -159894441 - MIR SINE MIR -8 254 3 23 0 0 0 chr4 24395001 24395024 -159893638 + AT_rich Low_complexity Low_complexity 1 23 0 756 163 36 18 chr4 24395785 24396059 -159892603 + L1MB7 LINE L1 5748 6172 -12 265 385 37 15 chr4 24397591 24397726 -159890936 - L2 LINE L2 -219 3053 2916 22 0 0 0 chr4 24397743 24397765 -159890897 + AT_rich Low_complexity Low_complexity 1 22 0 181 321 160 0 chr4 24397925 24398031 -159890631 + L2 LINE L2 3141 3263 -9 225 275 37 64 chr4 24398133 24398242 -159890420 - MIR SINE MIR -72 190 85 535 143 0 0 chr4 24398384 24398468 -159890194 + L1MB3 LINE L1 6075 6158 -25 383 286 36 54 chr4 24398657 24398825 -159889837 + MER5A DNA MER1_type 1 165 -24 * 448 301 31 25 chr4 24398692 24398855 -159889807 - MER5A DNA MER1_type -23 166 3 484 281 156 18 chr4 24398930 24399154 -159889508 + MIR SINE MIR 2 256 -6 2238 107 3 3 chr4 24400106 24400405 -159888257 - AluSx SINE Alu -13 299 1 28 48 0 0 chr4 24400565 24400607 -159888055 + AT_rich Low_complexity Low_complexity 1 42 0 1405 169 31 36 chr4 24400610 24400981 -159887681 - L1MA8 LINE L1 -22 6269 5912 697 92 10 0 chr4 24400979 24401077 -159887585 + L1MA7 LINE L1 5853 5951 -340 * 276 319 73 5 chr4 24401240 24401363 -159887299 - MIR SINE MIR -64 144 49 1010 320 131 16 chr4 24401534 24402105 -159886557 - L2 LINE L2 -353 2961 2325 248 306 120 34 chr4 24402105 24402314 -159886348 - L2 LINE L2 -649 2665 2439 909 309 8 4 chr4 24403190 24403436 -159885226 - MIR SINE MIR -6 256 10 435 231 0 0 chr4 24403691 24403799 -159884863 + (TA)n Simple_repeat Simple_repeat 2 109 0 2311 90 0 7 chr4 24403835 24404136 -159884526 + AluY SINE Alu 1 299 -12 303 279 31 93 chr4 24405507 24405668 -159882994 + MIR SINE MIR 106 256 -6 23 33 0 0 chr4 24406451 24406481 -159882181 + AT_rich Low_complexity Low_complexity 1 30 0 31 26 0 0 chr4 24407805 24407843 -159880819 + AT_rich Low_complexity Low_complexity 1 38 0 2138 108 7 3 chr4 24409999 24410296 -159878366 - AluSx SINE Alu -14 298 1 387 0 0 0 chr4 24410726 24410769 -159877893 + (TG)n Simple_repeat Simple_repeat 2 44 0 1966 108 0 0 chr4 24410800 24411086 -159877576 - AluSx SINE Alu 0 311 26 188 331 66 70 chr4 24412027 24412269 -159876393 - L3b LINE CR1 -57 1526 1286 540 97 0 0 chr4 24412463 24412556 -159876106 + (TA)n Simple_repeat Simple_repeat 2 94 0 2018 106 10 30 chr4 24417100 24417403 -159871259 - AluSq SINE Alu -16 297 1 22 0 0 0 chr4 24421075 24421097 -159867565 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr4 24422686 24422713 -159865949 + AT_rich Low_complexity Low_complexity 1 27 0 32 0 0 0 chr4 24423805 24423837 -159864825 + AT_rich Low_complexity Low_complexity 1 32 0 351 332 96 5 chr4 24424586 24424785 -159863877 + Charlie8 DNA MER1_type 48 264 -2153 260 345 109 0 chr4 24425172 24425291 -159863371 + L2 LINE L2 3141 3272 0 188 108 0 27 chr4 24425293 24425330 -159863332 + (TAA)n Simple_repeat Simple_repeat 1 36 0 27 29 0 0 chr4 24426986 24427020 -159861642 + AT_rich Low_complexity Low_complexity 1 34 0 2010 149 0 0 chr4 24429405 24429707 -159858955 + AluSp SINE Alu 1 302 -11 2311 67 0 3 chr4 24429709 24430033 -159858629 + AluY SINE Alu 1 323 0 230 234 0 0 chr4 24430268 24430315 -159858347 + (CA)n Simple_repeat Simple_repeat 2 48 0 209 179 0 36 chr4 24430321 24430377 -159858285 + (TATATG)n Simple_repeat Simple_repeat 1 54 0 21 0 0 0 chr4 24430619 24430640 -159858022 + AT_rich Low_complexity Low_complexity 1 21 0 344 266 35 35 chr4 24433502 24433615 -159855047 + MIR SINE MIR 33 145 -117 386 342 118 57 chr4 24433876 24434398 -159854264 - L2 LINE L2 -456 2858 2284 2250 81 3 10 chr4 24434398 24434696 -159853966 + AluY SINE Alu 1 296 -15 386 342 118 57 chr4 24434696 24434852 -159853810 - L2 LINE L2 -1030 2284 2139 510 268 12 42 chr4 24436527 24436695 -159851967 + L2 LINE L2 3150 3312 -1 216 0 0 0 chr4 24437769 24437793 -159850869 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2120 107 0 7 chr4 24437795 24438103 -159850559 + AluSc SINE Alu 4 309 0 3041 135 85 19 chr4 24438608 24439242 -159849420 - L1PB4 LINE L1 -291 5865 5184 1983 96 22 0 chr4 24439380 24439678 -159848984 - AluY SINE Alu 0 309 6 23 54 0 0 chr4 24440513 24440550 -159848112 + AT_rich Low_complexity Low_complexity 1 37 0 1692 156 25 0 chr4 24441207 24441483 -159847179 - AluSx SINE Alu -28 284 2 187 273 23 0 chr4 24442282 24442326 -159846336 - L2 LINE L2 -8 3305 3261 1346 146 204 0 chr4 24444658 24444938 -159843724 + MER44D DNA MER2_type 1 607 -2 452 322 40 17 chr4 24445066 24445243 -159843419 - MIR SINE MIR -70 192 12 25 0 0 0 chr4 24446658 24446683 -159841979 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr4 24447259 24447288 -159841374 + AT_rich Low_complexity Low_complexity 1 29 0 182 360 45 54 chr4 24447462 24447573 -159841089 + L2 LINE L2 3163 3272 0 341 328 23 0 chr4 24448302 24448479 -159840183 + L1ME4a LINE L1 5742 5922 -199 222 118 0 0 chr4 24448915 24448949 -159839713 + (TG)n Simple_repeat Simple_repeat 2 35 0 281 174 14 0 chr4 24449020 24449089 -159839573 + (TA)n Simple_repeat Simple_repeat 2 71 0 397 264 66 84 chr4 24449212 24449536 -159839126 - LTR33A LTR ERVL -174 347 23 25 65 0 0 chr4 24451128 24451174 -159837488 + AT_rich Low_complexity Low_complexity 1 46 0 2153 81 3 75 chr4 24451308 24451642 -159837020 - AluY SINE Alu -1 310 1 207 0 0 0 chr4 24452280 24452303 -159836359 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 624 299 73 59 chr4 24453423 24453861 -159834801 - L2 LINE L2 -9 3304 2861 279 0 0 0 chr4 24454158 24454189 -159834473 + (TA)n Simple_repeat Simple_repeat 1 31 0 2683 13 0 6 chr4 24454194 24454506 -159834156 - AluY SINE Alu -1 310 1 240 162 73 29 chr4 24454763 24454831 -159833831 + L1ME4a LINE L1 6051 6121 0 21 36 0 0 chr4 24454951 24454979 -159833683 + AT_rich Low_complexity Low_complexity 1 28 0 2160 51 4 11 chr4 24455385 24455659 -159833003 + AluY SINE Alu 35 306 -5 427 258 131 35 chr4 24456245 24456474 -159832188 + MER112 DNA MER1_type 8 258 -2 291 188 135 21 chr4 24458292 24458388 -159830274 + MER103 DNA DNA 13 119 -47 271 112 0 62 chr4 24458397 24458450 -159830212 - L2 LINE L2 -4 3309 3219 614 296 86 0 chr4 24458740 24458983 -159829679 - L2 LINE L2 -389 2925 2662 2017 107 10 3 chr4 24462896 24463187 -159825475 - AluY SINE Alu -18 293 1 23 0 0 0 chr4 24463277 24463300 -159825362 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr4 24464222 24464252 -159824410 + AT_rich Low_complexity Low_complexity 1 30 0 25 51 0 0 chr4 24464780 24464819 -159823843 + AT_rich Low_complexity Low_complexity 1 39 0 196 255 78 0 chr4 24465257 24465308 -159823354 + L2 LINE L2 3209 3263 -9 217 246 73 64 chr4 24465498 24465608 -159823054 + L2 LINE L2 3160 3270 -43 1637 169 3 45 chr4 24465877 24466185 -159822477 - AluJb SINE Alu -17 295 1 31 0 0 0 chr4 24466276 24466307 -159822355 + AT_rich Low_complexity Low_complexity 1 31 0 3672 220 57 7 chr4 24466311 24467232 -159821430 + L1MB7 LINE L1 5213 6179 -5 235 200 0 31 chr4 24467253 24467318 -159821344 + MER106B DNA MER1_type 992 1054 -5 212 167 0 0 chr4 24468461 24468497 -159820165 - L2 LINE L2 -7 3306 3271 227 58 39 39 chr4 24469453 24469505 -159819157 + (CA)n Simple_repeat Simple_repeat 2 53 0 2208 117 0 0 chr4 24470642 24470942 -159817720 + AluSg SINE Alu 3 302 -8 881 255 8 35 chr4 24471168 24471481 -159817181 - MLT1B LTR MaLR -12 374 71 6112 127 56 56 chr4 24471488 24471808 -159816854 - Tigger3b DNA MER2_type -1824 1204 885 188 67 33 0 chr4 24471808 24471838 -159816824 + (TGAG)n Simple_repeat Simple_repeat 1 31 0 6112 127 56 56 chr4 24471838 24471895 -159816767 - Tigger3b DNA MER2_type -2143 885 829 2308 97 0 6 chr4 24471895 24472206 -159816456 + AluSq SINE Alu 1 309 -4 6112 127 56 56 chr4 24472206 24473032 -159815630 - Tigger3b DNA MER2_type -2199 829 1 350 147 132 0 chr4 24473032 24473100 -159815562 - MLT1B LTR MaLR -313 77 1 2192 75 0 4 chr4 24473576 24473880 -159814782 - AluY SINE Alu 0 304 2 24 53 0 0 chr4 24475247 24475285 -159813377 + AT_rich Low_complexity Low_complexity 1 38 0 30 0 0 0 chr4 24475347 24475377 -159813285 + AT_rich Low_complexity Low_complexity 1 30 0 2074 128 0 13 chr4 24475622 24475928 -159812734 + AluSx SINE Alu 1 302 -10 186 43 0 0 chr4 24476113 24476136 -159812526 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 202 192 50 101 chr4 24477613 24477712 -159810950 - MIR SINE MIR -41 221 128 378 0 0 0 chr4 24478433 24478475 -159810187 + (TG)n Simple_repeat Simple_repeat 1 42 0 329 287 0 11 chr4 24478475 24478569 -159810093 + MER103 DNA DNA 63 155 -11 1482 81 0 0 chr4 24479598 24479796 -159808866 + L1PA6 LINE L1 5956 6153 -1 21 0 0 0 chr4 24479812 24479833 -159808829 + AT_rich Low_complexity Low_complexity 1 21 0 234 62 0 0 chr4 24481066 24481098 -159807564 + (TA)n Simple_repeat Simple_repeat 1 32 0 260 179 36 24 chr4 24483295 24483379 -159805283 + (TA)n Simple_repeat Simple_repeat 2 86 0 281 188 29 14 chr4 24483491 24483560 -159805102 - L2 LINE L2 -3 3310 3241 231 246 90 57 chr4 24483785 24483907 -159804755 - MLT1I LTR MaLR -199 210 85 254 297 101 34 chr4 24484222 24484370 -159804292 - L2 LINE L2 -44 3269 3112 259 194 16 0 chr4 24485347 24485409 -159803253 + (TA)n Simple_repeat Simple_repeat 1 63 0 250 301 63 26 chr4 24485690 24485959 -159802703 - L1MC/D LINE L1 -2264 5544 5266 254 259 125 35 chr4 24486100 24486343 -159802319 - L1MC/D LINE L1 -1013 5133 4883 24 53 0 0 chr4 24487980 24488018 -159800644 + AT_rich Low_complexity Low_complexity 1 38 0 424 51 0 0 chr4 24488018 24488077 -159800585 - L1PA6 LINE L1 -2 6152 6094 418 294 14 7 chr4 24488490 24488633 -159800029 + MIR SINE MIR 117 260 -2 390 42 0 0 chr4 24489350 24489398 -159799264 + (TG)n Simple_repeat Simple_repeat 1 48 0 2300 86 0 22 chr4 24490370 24490685 -159797977 - AluSg SINE Alu -2 308 1 188 345 0 0 chr4 24490763 24490821 -159797841 - L2 LINE L2 -10 3303 3246 427 350 94 5 chr4 24490943 24491166 -159797496 + MIR SINE MIR 14 256 -6 772 212 208 26 chr4 24491239 24491730 -159796932 - Charlie2 DNA MER1_type -36 2826 2247 476 290 29 14 chr4 24491797 24492004 -159796658 - Charlie2 DNA MER1_type -2595 267 58 229 306 12 12 chr4 24492092 24492177 -159796485 - MER103 DNA DNA -14 152 68 13129 123 26 7 chr4 24492185 24492346 -159796316 + Tigger1 DNA MER2_type 341 497 -1921 180 0 0 0 chr4 24492346 24492366 -159796296 + (CAA)n Simple_repeat Simple_repeat 2 21 0 13129 123 26 7 chr4 24492366 24494242 -159794420 + Tigger1 DNA MER2_type 497 2418 0 872 201 44 20 chr4 24494388 24494592 -159794070 + MER3 DNA MER1_type 1 209 0 418 317 101 22 chr4 24495192 24495419 -159793243 - MIR SINE MIR 0 262 18 23 68 0 0 chr4 24495420 24495464 -159793198 + AT_rich Low_complexity Low_complexity 1 44 0 522 272 22 22 chr4 24496430 24496610 -159792052 - L2 LINE L2 0 3313 3134 199 316 68 30 chr4 24498000 24498133 -159790529 + L2 LINE L2 2239 2376 -938 365 333 68 23 chr4 24498151 24498283 -159790379 + L2 LINE L2 3133 3270 -2 23 0 0 0 chr4 24505747 24505770 -159782892 + AT_rich Low_complexity Low_complexity 1 23 0 375 23 0 0 chr4 24506328 24506372 -159782290 + (TA)n Simple_repeat Simple_repeat 2 45 0 24 0 0 0 chr4 24507998 24508022 -159780640 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4 24509144 24509166 -159779496 + AT_rich Low_complexity Low_complexity 1 22 0 2282 92 0 0 chr4 24509547 24509862 -159778800 - AluY SINE Alu 0 315 1 2025 144 3 0 chr4 24510113 24510419 -159778243 + AluSx SINE Alu 1 307 -5 23 54 0 0 chr4 24514086 24514123 -159774539 + AT_rich Low_complexity Low_complexity 1 37 0 2054 131 3 20 chr4 24514625 24514922 -159773740 + AluSg SINE Alu 5 296 -14 32 26 0 0 chr4 24515025 24515064 -159773598 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr4 24515280 24515302 -159773360 + AT_rich Low_complexity Low_complexity 1 22 0 2142 134 0 13 chr4 24515474 24515781 -159772881 + AluSx SINE Alu 1 303 -9 201 159 32 48 chr4 24515915 24515978 -159772684 + (TATAA)n Simple_repeat Simple_repeat 1 62 0 463 292 62 11 chr4 24516186 24516364 -159772298 + MIR SINE MIR 2 188 -74 2122 107 0 3 chr4 24516939 24517230 -159771432 - AluSg SINE Alu -20 290 1 264 258 15 0 chr4 24518418 24518484 -159770178 + L2 LINE L2 3247 3313 0 996 144 0 0 chr4 24519199 24519372 -159769290 + (TA)n Simple_repeat Simple_repeat 2 174 0 1157 61 14 7 chr4 24519372 24519520 -159769142 - AluY SINE Alu -16 295 147 374 95 15 151 chr4 24519620 24519771 -159768891 + L1PA12 LINE L1 6049 6163 0 2343 93 0 3 chr4 24519931 24520231 -159768431 - AluSq SINE Alu -14 299 1 246 105 0 0 chr4 24520465 24520503 -159768159 + (ATTG)n Simple_repeat Simple_repeat 2 39 0 2257 96 3 3 chr4 24520554 24520855 -159767807 + AluSp SINE Alu 1 301 -12 245 320 62 56 chr4 24521412 24521590 -159767072 + MER5A DNA MER1_type 10 188 -1 248 279 13 25 chr4 24521592 24521671 -159766991 - MIR3 SINE MIR -49 159 82 450 35 96 9 chr4 24522067 24522182 -159766480 + (TA)n Simple_repeat Simple_repeat 2 126 0 1605 131 123 0 chr4 24522182 24522434 -159766228 - AluSx SINE Alu -27 285 3 240 35 0 0 chr4 24522509 24522538 -159766124 + (TG)n Simple_repeat Simple_repeat 1 29 0 201 278 0 41 chr4 24522981 24523078 -159765584 + A-rich Low_complexity Low_complexity 2 94 0 1471 175 64 59 chr4 24523142 24523530 -159765132 - MLT1B LTR MaLR 0 390 1 227 315 161 35 chr4 24523566 24523833 -159764829 + L2 LINE L2 2376 2608 -706 2084 125 13 16 chr4 24523833 24524146 -159764516 - AluSq SINE Alu -1 312 1 227 315 161 35 chr4 24524146 24524338 -159764324 + L2 LINE L2 2608 2893 -421 4112 173 7 9 chr4 24524504 24525237 -159763425 - MER44D DNA MER2_type -1 604 2 207 0 0 0 chr4 24525312 24525335 -159763327 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1636 99 5 5 chr4 24525638 24525895 -159762767 + AluSc SINE Alu 67 309 0 230 325 24 0 chr4 24526180 24526263 -159762399 - MIR3 SINE MIR -21 187 103 401 243 0 10 chr4 24526454 24526557 -159762105 + MER94 DNA DNA 2 103 -31 2157 105 0 14 chr4 24526836 24527131 -159761531 + AluSx SINE Alu 22 312 0 257 307 20 30 chr4 24528607 24528708 -159759954 + MIR SINE MIR 158 257 -5 2128 94 35 0 chr4 24529074 24529360 -159759302 - AluSq SINE Alu -17 296 1 203 405 76 8 chr4 24529722 24529853 -159758809 + L2 LINE L2 3133 3272 0 667 213 114 5 chr4 24531115 24531317 -159757345 + L1ME3A LINE L1 5880 6103 -67 2575 49 3 0 chr4 24531943 24532247 -159756415 - AluY SINE Alu -6 305 1 227 321 0 12 chr4 24532516 24532600 -159756062 - MER94 DNA DNA 0 134 52 466 255 108 13 chr4 24532802 24532959 -159755703 - MIR3 SINE MIR -21 187 16 213 200 20 20 chr4 24533099 24533149 -159755513 - L2 LINE L2 0 3313 3264 330 331 65 6 chr4 24535220 24535389 -159753273 - MIR SINE MIR -2 260 82 2372 141 23 9 chr4 24535390 24535830 -159752832 + L1MA9 LINE L1 5864 6309 -3 234 136 34 17 chr4 24535942 24536001 -159752661 + (CATA)n Simple_repeat Simple_repeat 1 60 0 310 247 21 0 chr4 24536008 24536101 -159752561 + L1MC4 LINE L1 6614 6708 -1334 271 253 0 22 chr4 24536145 24536236 -159752426 + L1MC4 LINE L1 6614 6702 -1340 201 74 0 0 chr4 24536238 24536265 -159752397 + (TATG)n Simple_repeat Simple_repeat 2 28 0 229 211 18 83 chr4 24536265 24536374 -159752288 - L1MC4 LINE L1 -1339 6703 6602 288 170 0 0 chr4 24536404 24536457 -159752205 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 664 296 32 9 chr4 24536722 24536942 -159751720 + MIR SINE MIR 38 262 0 23 68 0 0 chr4 24537181 24537225 -159751437 + AT_rich Low_complexity Low_complexity 1 44 0 1647 81 4 28 chr4 24537785 24538033 -159750629 + L1MA2 LINE L1 6063 6304 0 628 191 17 40 chr4 24538051 24538240 -159750422 + L1MA7 LINE L1 5936 6122 -169 2316 115 0 6 chr4 24538993 24539307 -159749355 - AluSx SINE Alu 0 312 1 183 345 71 36 chr4 24539349 24539433 -159749229 + MIR SINE MIR 31 117 -91 865 278 115 47 chr4 24540460 24540946 -159747716 - LTR33 LTR ERVL -1 520 2 318 239 228 0 chr4 24540966 24541058 -159747604 - L2 LINE L2 -3 3310 3198 21 57 0 0 chr4 24541431 24541466 -159747196 + AT_rich Low_complexity Low_complexity 1 35 0 32 0 0 0 chr4 24542082 24542114 -159746548 + AT_rich Low_complexity Low_complexity 1 32 0 1952 96 4 8 chr4 24542354 24542615 -159746047 - AluY SINE Alu -3 308 49 29 78 0 0 chr4 24542833 24542897 -159745765 + AT_rich Low_complexity Low_complexity 1 64 0 212 175 35 0 chr4 24542897 24542954 -159745708 + GA-rich Low_complexity Low_complexity 2 60 0 570 325 55 20 chr4 24543151 24543351 -159745311 + MIR SINE MIR 32 238 -24 287 286 19 29 chr4 24543354 24543459 -159745203 + L2 LINE L2 2315 2418 -896 302 330 21 0 chr4 24545064 24545161 -159743501 + MIR3 SINE MIR 61 159 -49 288 53 0 0 chr4 24545961 24545999 -159742663 + (GGGGA)n Simple_repeat Simple_repeat 5 42 0 218 299 26 0 chr4 24546399 24546476 -159742186 + GA-rich Low_complexity Low_complexity 2 80 0 696 216 88 0 chr4 24548844 24549015 -159739647 - MER5A DNA MER1_type -2 187 2 589 235 5 70 chr4 24549038 24549225 -159739437 - MER63A DNA MER1_type -35 175 1 1934 111 99 41 chr4 24549351 24549695 -159738967 - THE1B LTR MaLR 0 364 1 490 236 96 51 chr4 24550269 24550447 -159738215 + MIR SINE MIR 74 259 -3 2246 93 7 0 chr4 24550678 24550968 -159737694 - AluY SINE Alu -19 292 1 2232 105 0 0 chr4 24551160 24551455 -159737207 - AluSg SINE Alu -15 295 1 227 0 91 0 chr4 24552018 24552051 -159736611 + T-rich Low_complexity Low_complexity 5 40 0 2011 109 7 11 chr4 24552086 24552370 -159736292 - AluSq SINE Alu -30 283 1 1695 178 50 4 chr4 24552534 24552815 -159735847 + AluJb SINE Alu 1 294 -18 408 238 354 0 chr4 24553280 24553461 -159735201 + MIR SINE MIR 3 247 -15 495 300 126 9 chr4 24554453 24554676 -159733986 - MIR SINE MIR -2 260 12 196 326 76 22 chr4 24556621 24556713 -159731949 + MIR3 SINE MIR 2 98 -110 207 114 0 0 chr4 24557013 24557048 -159731614 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 222 208 0 0 chr4 24557372 24557420 -159731242 + (AATTG)n Simple_repeat Simple_repeat 5 52 0 196 279 0 0 chr4 24557687 24557730 -159730932 - L2 LINE L2 -8 3305 3263 397 318 98 19 chr4 24558015 24558229 -159730433 - MIR SINE MIR -3 259 29 905 213 0 0 chr4 24558418 24558587 -159730075 + AluJb SINE Alu 137 305 -7 2407 76 0 3 chr4 24558959 24559260 -159729402 + AluY SINE Alu 1 300 -11 3384 105 4 8 chr4 24559266 24559781 -159728881 + L1PA13 LINE L1 5432 5944 -219 186 43 0 0 chr4 24560795 24560818 -159727844 + (CA)n Simple_repeat Simple_repeat 1 23 0 285 277 43 0 chr4 24561034 24561128 -159727534 - MIR SINE MIR -4 258 161 503 310 35 100 chr4 24562243 24562694 -159725968 - L2 LINE L2 -17 3296 2875 254 75 528 0 chr4 24564317 24564370 -159724292 - MIR SINE MIR -92 116 36 226 209 0 0 chr4 24565494 24565537 -159723125 + (CA)n Simple_repeat Simple_repeat 2 44 0 1045 276 59 28 chr4 24565929 24566284 -159722378 + LTR16A LTR ERVL 38 403 -47 1764 132 38 25 chr4 24566486 24566827 -159721835 - MER4A LTR ERV1 0 664 261 632 131 0 10 chr4 24566827 24566926 -159721736 - MER4A LTR ERV1 -566 98 1 7283 107 46 12 chr4 24566938 24568061 -159720601 - MER4A-int LTR ERV1 -5 6593 5432 582 160 134 0 chr4 24568061 24568180 -159720482 + LTR8 LTR ERV1 123 257 -434 4598 67 59 9 chr4 24568180 24568877 -159719785 - MER4-int LTR ERV1 -4103 2495 1764 489 34 0 0 chr4 24568893 24568952 -159719710 + (CA)n Simple_repeat Simple_repeat 2 60 0 3281 124 120 25 chr4 24568957 24569523 -159719139 - MER4-int LTR ERV1 -5608 1150 531 2988 91 95 0 chr4 24569524 24569933 -159718729 - LTR7 LTR ERV1 -2 448 1 2467 90 50 13 chr4 24569933 24570311 -159718351 - HERVH LTR ERV1 0 7713 7322 1386 127 38 0 chr4 24570309 24570521 -159718141 - HERVH LTR ERV1 -1894 5819 5600 * 8268 130 6 7 chr4 24570522 24572245 -159716417 - HERVH LTR ERV1 -2287 4242 3492 824 162 20 0 chr4 24572235 24572383 -159716279 - HERVH LTR ERV1 -4423 3290 3140 * 20147 102 21 7 chr4 24572377 24575323 -159713339 - HERVH LTR ERV1 -4726 2987 1 3081 81 93 0 chr4 24575325 24575735 -159712927 - LTR7 LTR ERV1 -2 448 1 2357 127 12 6 chr4 24575735 24576081 -159712581 - MER4A-int LTR ERV1 -6222 536 189 951 258 119 51 chr4 24576080 24576322 -159712340 - MER4A-int LTR ERV1 -4107 2224 1949 * 2233 90 10 0 chr4 24576322 24576611 -159712051 + AluY SINE Alu 1 292 -19 951 258 119 51 chr4 24576611 24576721 -159711941 - MER4A-int LTR ERV1 -4382 1949 1848 2548 118 86 31 chr4 24576750 24577373 -159711289 - MER4A-int LTR ERV1 -5745 853 3 1666 129 16 22 chr4 24577378 24577688 -159710974 - MER4A LTR ERV1 0 664 261 672 121 0 10 chr4 24577688 24577787 -159710875 - MER4A LTR ERV1 -566 98 1 868 235 20 15 chr4 24578117 24578300 -159710362 - MLT1A2 LTR MaLR 0 374 191 713 176 69 8 chr4 24578300 24578431 -159710231 + MLT1A1 LTR MaLR 1 139 -226 787 148 0 16 chr4 24578431 24578559 -159710103 - FLAM_C SINE Alu 0 143 18 732 234 60 5 chr4 24578562 24578746 -159709916 + MLT1A1 LTR MaLR 171 364 -1 313 227 0 13 chr4 24578813 24578888 -159709774 - MLT1A2 LTR MaLR -213 161 88 1411 120 0 0 chr4 24578893 24579102 -159709560 + L1P3 LINE L1 949 1157 -5304 805 186 18 36 chr4 24579102 24579269 -159709393 - MER58 DNA MER1_type -176 165 2 23 0 0 0 chr4 24579459 24579482 -159709180 + AT_rich Low_complexity Low_complexity 1 23 0 198 341 80 0 chr4 24579522 24579610 -159709052 + L2 LINE L2 3178 3272 0 6218 134 12 7 chr4 24580314 24581816 -159706846 - L1PB2 LINE L1 -2 6149 4639 341 339 8 0 chr4 24581837 24581967 -159706695 + L1MEd LINE L1 42 172 -5947 * 592 206 206 0 chr4 24581965 24582101 -159706561 + L1MEd LINE L1 466 629 -5490 632 234 74 69 chr4 24582193 24582427 -159706235 + L1MEd LINE L1 796 1034 -5085 679 231 0 30 chr4 24582427 24582561 -159706101 + FLAM_C SINE Alu 1 130 -3 632 234 74 69 chr4 24582561 24582745 -159705917 + L1MEd LINE L1 1034 1216 -4903 307 97 32 16 chr4 24582753 24582815 -159705847 + L1PB1 LINE L1 5957 6019 -132 215 335 60 37 chr4 24582857 24583072 -159705590 + MIR SINE MIR 4 223 -39 341 236 0 0 chr4 24583233 24583305 -159705357 - L2 LINE L2 0 3272 3201 189 316 0 0 chr4 24583333 24583390 -159705272 + MIR SINE MIR 169 225 -37 202 284 60 15 chr4 24583533 24583600 -159705062 + MIR SINE MIR 15 84 -178 693 294 60 7 chr4 24583607 24583889 -159704773 - LTR16C LTR ERVL -4 487 191 207 180 98 16 chr4 24584031 24584092 -159704570 + MIR SINE MIR 99 164 -98 590 238 65 92 chr4 24584179 24584582 -159704080 + MLT1J2 LTR MaLR 59 450 0 278 222 0 49 chr4 24584602 24584683 -159703979 + MIR SINE MIR 186 262 0 1016 254 152 6 chr4 24585890 24586252 -159702410 + MER31B LTR ERV1 1 415 -51 2835 141 19 23 chr4 24586268 24586744 -159701918 + MER31A LTR ERV1 12 485 0 287 266 60 47 chr4 24586812 24586907 -159701755 + MIR SINE MIR 24 121 -87 1243 124 5 5 chr4 24586907 24587093 -159701569 - MER83C-int LTR ERV1 -982 3898 3713 304 106 0 0 chr4 24587103 24587150 -159701512 + MER83B-int LTR ERV1 3666 3712 -1168 7164 192 46 21 chr4 24587151 24588701 -159699961 - MER83C-int LTR ERV1 -1176 3704 48 2027 139 78 6 chr4 24588760 24589092 -159699570 - MER83C LTR ERV1 0 373 18 1791 211 15 0 chr4 24589106 24589433 -159699229 + MSTA LTR MaLR 97 428 0 2726 123 5 3 chr4 24589981 24590355 -159698307 - THE1C LTR MaLR 0 375 1 329 152 0 152 chr4 24590631 24590723 -159697939 + MLT1E2 LTR MaLR 549 626 0 1808 187 12 0 chr4 24590841 24591167 -159697495 - MLT1B LTR MaLR -60 330 1 260 335 36 24 chr4 24592618 24592785 -159695877 - MIR SINE MIR -12 250 82 247 332 134 11 chr4 24593075 24593262 -159695400 - MIR SINE MIR 0 262 53 524 308 111 21 chr4 24594221 24594455 -159694207 - MIR SINE MIR 0 262 8 2596 160 22 2 chr4 24595151 24595608 -159693054 - L1MB3 LINE L1 0 6183 5718 348 256 72 8 chr4 24596365 24596490 -159692172 - MIR SINE MIR -6 256 124 586 208 32 0 chr4 24596758 24596883 -159691779 + MLT1J2 LTR MaLR 4 132 -318 3682 135 14 52 chr4 24597029 24597137 -159691525 - MER41B LTR ERV1 0 635 524 10416 24 4 57 chr4 24597137 24599123 -159689539 + L1PA3 LINE L1 4222 6155 0 3682 135 14 52 chr4 24599123 24599674 -159688988 - MER41B LTR ERV1 -111 524 1 22 0 0 0 chr4 24599764 24599786 -159688876 + AT_rich Low_complexity Low_complexity 1 22 0 511 216 39 0 chr4 24601018 24601120 -159687542 + MER3 DNA MER1_type 1 106 -103 14294 176 23 17 chr4 24601179 24602894 -159685768 - L1PB2 LINE L1 0 6867 5163 200 59 29 0 chr4 24602894 24602928 -159685734 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 14294 176 23 17 chr4 24602928 24603010 -159685652 - L1PB2 LINE L1 -1704 5163 5083 298 91 68 0 chr4 24603010 24603054 -159685608 - U3 snRNA snRNA -142 75 29 14294 176 23 17 chr4 24603054 24603336 -159685326 - L1PB2 LINE L1 -1784 5083 4804 2083 154 55 25 chr4 24603336 24603700 -159684962 - THE1C LTR MaLR 0 375 1 14294 176 23 17 chr4 24603700 24605641 -159683021 - L1PB2 LINE L1 -2063 4804 2783 2032 169 130 16 chr4 24605643 24606027 -159682635 + MSTA LTR MaLR 1 428 0 3212 139 7 138 chr4 24606028 24606795 -159681867 + MSTA-int LTR MaLR 3 668 -912 7952 170 54 2 chr4 24606796 24608225 -159680437 - L1PB2 LINE L1 -4847 2016 514 270 256 0 12 chr4 24608236 24608318 -159680344 + LTR37B LTR ERV1 388 468 0 2696 123 5 5 chr4 24608550 24608925 -159679737 + THE1C LTR MaLR 1 375 0 1894 81 0 4 chr4 24609678 24609924 -159678738 - L1P LINE L1 -5901 245 1 1612 86 17 10 chr4 24609891 24610228 -159678434 - L1P2 LINE L1 -628 5526 5187 * 2196 147 2 66 chr4 24610228 24610772 -159677890 + L1P LINE L1 3158 3666 -2480 17802 26 1 1 chr4 24610872 24613612 -159675050 - L1PA3 LINE L1 -109 6046 3305 462 282 40 0 chr4 24613753 24613902 -159674760 - MER63 DNA MER1_type -1 1060 906 478 80 13 27 chr4 24613902 24613977 -159674685 + MLT1B LTR MaLR 317 390 0 245 250 0 0 chr4 24614863 24614911 -159673751 + polypyrimidine Low_complexity Low_complexity 1 48 0 3131 65 15 5 chr4 24615409 24615809 -159672853 + MLT2A1 LTR ERVL 1 404 -40 332 146 0 0 chr4 24615863 24615918 -159672744 + MLT2A1 LTR ERVL 390 444 0 1858 128 88 0 chr4 24616461 24616734 -159671928 - AluSx SINE Alu -15 297 1 1918 185 38 9 chr4 24616783 24617124 -159671538 - MLT1A1 LTR MaLR 0 365 15 1165 224 101 34 chr4 24617160 24617598 -159671064 + MLT1C LTR MaLR 1 467 0 679 307 38 4 chr4 24617612 24617850 -159670812 + MIR SINE MIR 16 261 -1 24 0 0 0 chr4 24617926 24617950 -159670712 + AT_rich Low_complexity Low_complexity 1 24 0 937 176 33 22 chr4 24617968 24618150 -159670512 - MLT1A2 LTR MaLR -2 372 189 366 169 40 8 chr4 24618172 24618296 -159670366 + GA-rich Low_complexity Low_complexity 1 128 0 875 154 26 13 chr4 24618313 24618469 -159670193 - MLT1A2 LTR MaLR -216 158 1 1944 190 50 52 chr4 24619678 24620177 -159668485 + MLT1D LTR MaLR 1 498 -7 1161 249 30 14 chr4 24620236 24620533 -159668129 - MLT1A1 LTR MaLR -8 357 56 2398 110 0 0 chr4 24621051 24621360 -159667302 + AluSx SINE Alu 1 309 -3 798 191 45 6 chr4 24622635 24622813 -159665849 + MER53 DNA DNA 2 186 -3 595 235 143 31 chr4 24623840 24624036 -159664626 - MER20 DNA MER1_type 0 219 2 2339 89 3 0 chr4 24624199 24624492 -159664170 + AluSc SINE Alu 1 294 -15 319 339 62 22 chr4 24624534 24624758 -159663904 - L2 LINE L2 0 3313 3081 628 287 126 16 chr4 24624759 24625125 -159663537 - LTR50 LTR ERVL -1 794 389 542 223 81 0 chr4 24625253 24625401 -159663261 - LTR50 LTR ERVL -628 167 8 336 48 0 0 chr4 24625661 24625703 -159662959 + (TG)n Simple_repeat Simple_repeat 2 43 0 1617 181 110 14 chr4 24628064 24628087 -159660575 - MLT2D LTR ERVL -14 400 381 357 62 0 0 chr4 24628087 24628135 -159660527 + (TG)n Simple_repeat Simple_repeat 1 48 0 1617 181 110 14 chr4 24628135 24628476 -159660186 - MLT2D LTR ERVL -33 381 1 6714 210 13 5 chr4 24628576 24629811 -159658851 - ERVL LTR ERVL -2517 3247 2003 494 241 41 87 chr4 24630051 24630331 -159658331 + MLT1H1 LTR MaLR 202 547 -8 2457 73 0 10 chr4 24631204 24631546 -159657116 - AluY SINE Alu 0 311 1 1014 230 53 32 chr4 24631708 24631872 -159656790 - MLT1A2 LTR MaLR -24 350 176 306 50 0 0 chr4 24631872 24631912 -159656750 + (GA)n Simple_repeat Simple_repeat 2 41 0 1014 230 53 32 chr4 24631912 24632030 -159656632 - MLT1A2 LTR MaLR -198 176 62 545 111 63 71 chr4 24632030 24632156 -159656506 + L1MB2 LINE L1 6047 6171 0 264 231 120 60 chr4 24632284 24632401 -159656261 - MLT1J LTR MaLR -75 436 313 274 214 86 14 chr4 24632647 24632717 -159655945 - MLT1L LTR MaLR -536 79 5 2040 121 0 24 chr4 24633482 24633779 -159654883 - AluSc SINE Alu -19 290 1 368 267 185 0 chr4 24633790 24633936 -159654726 - L1ME3A LINE L1 -5 6165 5993 1108 254 143 35 chr4 24634061 24634517 -159654145 + MLT1D LTR MaLR 1 505 0 1798 147 0 0 chr4 24635350 24635623 -159653039 + AluY SINE Alu 14 286 -25 2259 184 26 22 chr4 24635834 24636297 -159652365 - MLT1C LTR MaLR 0 467 3 371 279 0 0 chr4 24636537 24636623 -159652039 - MER5A DNA MER1_type -83 106 21 23 0 0 0 chr4 24636841 24636864 -159651798 + AT_rich Low_complexity Low_complexity 1 23 0 1092 174 10 0 chr4 24637125 24637321 -159651341 + L1MA9 LINE L1 5985 6182 -130 2046 164 14 5 chr4 24637436 24637807 -159650855 - L1P LINE L1 -3156 2990 2617 4185 137 25 72 chr4 24638603 24639500 -159649162 + L1P LINE L1 4121 4974 -1172 684 268 28 38 chr4 24640761 24641052 -159647610 - AluJo SINE Alu -11 301 14 407 338 50 10 chr4 24642018 24642219 -159646443 + MIR SINE MIR 35 243 -19 446 268 147 32 chr4 24643617 24643774 -159644888 + MER5A DNA MER1_type 15 189 0 352 225 0 0 chr4 24644711 24644791 -159643871 - MLT1A2 LTR MaLR -310 80 1 2115 183 32 9 chr4 24646270 24646728 -159641934 - L1MB3 LINE L1 -65 6124 5662 2042 146 17 0 chr4 24647645 24648002 -159640660 + L1PBa LINE L1 1654 2016 -4847 1311 184 9 0 chr4 24648003 24648231 -159640431 - MSTA-int LTR MaLR -912 668 439 293 192 68 41 chr4 24648232 24648305 -159640357 - MSTA LTR MaLR -178 250 176 313 217 103 60 chr4 24648350 24648534 -159640128 - MSTA-int LTR MaLR -1218 433 242 1750 217 15 0 chr4 24649363 24649690 -159638972 - MSTA LTR MaLR 0 428 97 464 267 181 8 chr4 24649696 24649962 -159638700 + MER83B LTR ERV1 5 316 -62 8295 129 8 15 chr4 24650663 24651962 -159636700 - THE1A-int LTR MaLR -291 1289 1 680 212 108 4 chr4 24651965 24652234 -159636428 - THE1A LTR MaLR -3 352 56 219 335 36 24 chr4 24653546 24653713 -159634949 - MIR SINE MIR -12 250 82 22 0 0 0 chr4 24654001 24654023 -159634639 + AT_rich Low_complexity Low_complexity 1 22 0 712 227 11 61 chr4 24654834 24655086 -159633576 - MER8 DNA MER2_type 0 239 7 1357 200 37 14 chr4 24656166 24656461 -159632201 + L1M4 LINE L1 4637 4938 -1208 186 313 31 0 chr4 24658095 24658159 -159630503 - MIR SINE MIR -129 133 68 1783 140 35 7 chr4 24658389 24658674 -159629988 + AluSq SINE Alu 1 293 -20 1091 214 75 14 chr4 24660165 24660446 -159628216 - MLT1E3 LTR MaLR 0 624 327 518 250 61 14 chr4 24660510 24660656 -159628006 - MLT1E3 LTR MaLR -393 261 62 5137 127 35 14 chr4 24661402 24662363 -159626299 - L1P LINE L1 -4109 2037 1056 2285 90 3 0 chr4 24663352 24663642 -159625020 + AluSc SINE Alu 1 291 -18 397 327 66 26 chr4 24663687 24663913 -159624749 - L2 LINE L2 0 3313 3079 508 283 89 26 chr4 24664009 24664278 -159624384 - LTR50 LTR ERVL -121 674 389 245 250 0 0 chr4 24665439 24665487 -159623175 + polypyrimidine Low_complexity Low_complexity 1 48 0 2359 92 31 15 chr4 24665985 24666377 -159622285 + MLT2A1 LTR ERVL 1 398 -46 533 308 111 21 chr4 24667850 24668084 -159620578 + MIR SINE MIR 8 262 0 1959 204 3 3 chr4 24669375 24669738 -159618924 - MLT1A1 LTR MaLR -2 363 1 721 284 28 14 chr4 24669789 24670000 -159618662 - LTR33 LTR ERVL -307 214 1 390 311 15 0 chr4 24670197 24670329 -159618333 + L2 LINE L2 2219 2352 -962 224 256 151 0 chr4 24670597 24670683 -159617979 - MIR SINE MIR -5 257 159 2136 103 0 0 chr4 24671649 24671922 -159616740 - AluSc SINE Alu -36 273 1 342 93 0 0 chr4 24671923 24671977 -159616685 + L1MA9 LINE L1 6254 6307 -5 1561 184 0 9 chr4 24672923 24673249 -159615413 + MER33 DNA MER1_type 1 323 -1 1959 204 3 3 chr4 24673810 24674173 -159614489 - MLT1A1 LTR MaLR -2 363 1 721 284 28 14 chr4 24674224 24674435 -159614227 - LTR33 LTR ERVL -307 214 1 390 311 15 0 chr4 24674632 24674764 -159613898 + L2 LINE L2 2219 2352 -962 280 310 271 10 chr4 24675032 24675235 -159613427 - MIR SINE MIR -5 257 2 192 321 0 0 chr4 24675453 24675506 -159613156 - L2 LINE L2 -43 3229 3177 287 342 114 0 chr4 24675616 24675730 -159612932 - L2 LINE L2 -1 3312 3186 22 35 0 0 chr4 24676023 24676052 -159612610 + AT_rich Low_complexity Low_complexity 1 29 0 248 176 81 0 chr4 24677547 24677621 -159611041 + Charlie7 DNA MER1_type 278 357 -2255 262 143 0 0 chr4 24677885 24677927 -159610735 + MER2 DNA MER2_type 3 44 -301 297 211 0 18 chr4 24677995 24678052 -159610610 + MER2 DNA MER2_type 290 345 0 1141 254 86 20 chr4 24678052 24678610 -159610052 + Charlie7 DNA MER1_type 1729 2323 -289 343 278 42 21 chr4 24678673 24678817 -159609845 - MIR SINE MIR 0 262 116 387 301 26 13 chr4 24679269 24679425 -159609237 + L3 LINE CR1 1165 1322 -255 381 22 0 0 chr4 24679660 24679706 -159608956 + (TG)n Simple_repeat Simple_repeat 2 47 0 398 335 59 12 chr4 24679856 24680026 -159608636 - MIR SINE MIR -71 191 14 247 366 122 0 chr4 24680033 24680197 -159608465 - L2 LINE L2 -815 2499 2316 250 267 99 37 chr4 24682011 24682172 -159606490 + L1ME3A LINE L1 5960 6130 -40 22 56 0 0 chr4 24682172 24682208 -159606454 + AT_rich Low_complexity Low_complexity 1 36 0 2341 75 7 0 chr4 24682763 24683055 -159605607 - AluY SINE Alu -17 294 1 454 281 7 7 chr4 24684894 24685047 -159603615 + L1MA10 LINE L1 6169 6321 -13 2114 68 4 46 chr4 24685048 24685329 -159603333 + AluSp SINE Alu 23 291 -22 215 305 113 35 chr4 24685353 24685494 -159603168 + MIR SINE MIR 57 208 -54 923 135 0 0 chr4 24687087 24687220 -159601442 + FLAM_C SINE Alu 1 133 0 249 303 8 34 chr4 24688286 24688405 -159600257 + CT-rich Low_complexity Low_complexity 5 120 0 197 208 0 19 chr4 24688413 24688466 -159600196 + T-rich Low_complexity Low_complexity 3 54 0 892 190 58 23 chr4 24688497 24688793 -159599869 - MER2 DNA MER2_type 0 345 6 202 226 16 32 chr4 24689512 24689574 -159599088 + T-rich Low_complexity Low_complexity 1 61 0 8284 34 0 2 chr4 24689823 24690879 -159597783 - L1P LINE L1 -3140 3006 1953 6151 38 1 0 chr4 24690879 24691615 -159597047 + L1PA3 LINE L1 5416 6152 -3 1785 161 14 3 chr4 24691769 24692055 -159596607 + AluSx SINE Alu 3 291 -21 1004 216 9 19 chr4 24692305 24692518 -159596144 - MER77 LTR ERV1 -7 598 388 39810 58 6 1 chr4 24692530 24698655 -159590007 - L1PA5 LINE L1 0 6154 1 1374 212 47 22 chr4 24698664 24698985 -159589677 - MER77 LTR ERV1 -210 395 67 266 318 45 11 chr4 24699497 24699585 -159589077 - L2 LINE L2 -24 3248 3158 189 139 0 0 chr4 24699588 24699631 -159589031 + (TTTTTG)n Simple_repeat Simple_repeat 1 43 0 481 252 46 23 chr4 24700344 24700475 -159588187 - MER5A DNA MER1_type -30 159 26 270 116 0 0 chr4 24701555 24701598 -159587064 + (CA)n Simple_repeat Simple_repeat 2 44 0 479 310 71 25 chr4 24703073 24703298 -159585364 - MIR SINE MIR -19 243 8 1558 193 11 11 chr4 24704014 24704289 -159584373 - AluJo SINE Alu -37 275 1 28 61 0 0 chr4 24705665 24705714 -159582948 + AT_rich Low_complexity Low_complexity 1 49 0 1439 188 50 24 chr4 24707278 24707576 -159581086 - AluJo SINE Alu -6 306 1 387 278 122 65 chr4 24708468 24708713 -159579949 + MIR SINE MIR 2 260 -2 769 224 88 24 chr4 24711408 24711613 -159577049 + MIR SINE MIR 11 228 -34 2314 98 0 22 chr4 24711722 24712038 -159576624 - AluSg SINE Alu -1 309 1 311 281 22 7 chr4 24712553 24712692 -159575970 - L1 LINE L1 -1723 4423 4283 1231 200 37 14 chr4 24713010 24713305 -159575357 + L1M4 LINE L1 4637 4938 -1208 334 311 59 15 chr4 24713913 24714048 -159574614 - MER91B DNA MER1_type -32 158 18 1517 212 14 10 chr4 24714053 24714350 -159574312 + AluJo SINE Alu 1 298 -14 680 247 45 0 chr4 24714557 24714735 -159573927 - MER5A DNA MER1_type -3 186 1 36730 72 16 17 chr4 24714830 24720982 -159567680 + L1PA5 LINE L1 11 6152 -2 4567 72 15 0 chr4 24722136 24722736 -159565926 + L1PA7 LINE L1 5546 6154 0 427 339 39 17 chr4 24722761 24722994 -159565668 - MIR SINE MIR -2 260 23 413 97 14 0 chr4 24724764 24724836 -159563826 + (TA)n Simple_repeat Simple_repeat 1 73 0 213 39 0 0 chr4 24725073 24725099 -159563563 + (TG)n Simple_repeat Simple_repeat 2 27 0 * 230 54 0 27 chr4 24725098 24725135 -159563527 + (TA)n Simple_repeat Simple_repeat 1 36 0 1256 98 12 0 chr4 24725213 24725376 -159563286 + AluSg/x SINE Alu 135 299 -13 329 269 76 8 chr4 24725477 24725596 -159563066 + L2 LINE L2 3136 3262 -10 345 277 27 68 chr4 24726362 24726510 -159562152 - MIR3 SINE MIR -57 151 10 811 266 18 65 chr4 24728086 24728259 -159560403 + MIR SINE MIR 1 158 -104 2313 106 0 0 chr4 24728259 24728562 -159560100 - AluSq SINE Alu -10 303 1 811 266 18 65 chr4 24728562 24728663 -159559999 + MIR SINE MIR 158 262 0 192 152 0 0 chr4 24729071 24729104 -159559558 + L2 LINE L2 3279 3311 -2 229 372 68 14 chr4 24729322 24729470 -159559192 - MIR3 SINE MIR -11 197 42 340 361 45 8 chr4 24729478 24729611 -159559051 - MIR3 SINE MIR -3 205 68 21 0 0 0 chr4 24729992 24730013 -159558649 + AT_rich Low_complexity Low_complexity 1 21 0 189 268 0 0 chr4 24730042 24730083 -159558579 + L2 LINE L2 3222 3262 -10 309 51 0 0 chr4 24730103 24730142 -159558520 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 1571 251 57 24 chr4 24731659 24732357 -159556305 - L2 LINE L2 0 3313 2588 693 332 138 55 chr4 24732605 24733741 -159554921 + L2 LINE L2 1609 2839 -475 190 211 28 127 chr4 24733922 24733993 -159554669 + MIR SINE MIR 88 151 -111 420 304 20 38 chr4 24734522 24734728 -159553934 + MIR3 SINE MIR 15 212 -50 782 217 4 83 chr4 24736078 24736331 -159552331 + MER8 DNA MER2_type 7 239 0 213 243 29 29 chr4 24737020 24737070 -159551592 + (CAAA)n Simple_repeat Simple_repeat 2 54 -17 1075 197 75 105 chr4 24737070 24737548 -159551114 + MLT2C2 LTR ERVL 1 464 0 213 243 29 29 chr4 24737548 24737567 -159551095 + (CAAA)n Simple_repeat Simple_repeat 53 71 0 287 309 65 14 chr4 24738108 24738229 -159550433 - L2 LINE L2 -10 3303 3173 2158 163 14 3 chr4 24738229 24738590 -159550072 - MLT1A1 LTR MaLR 0 365 1 287 309 65 14 chr4 24738590 24738607 -159550055 - L2 LINE L2 -140 3173 3158 959 182 68 27 chr4 24738901 24738990 -159549672 - MER46A DNA MER2_type -2502 229 145 2066 122 29 32 chr4 24738990 24739366 -159549296 - THE1C LTR MaLR 0 375 1 959 182 68 27 chr4 24739366 24739496 -159549166 - MER46A DNA MER2_type -2586 145 1 327 327 82 0 chr4 24739581 24739740 -159548922 - MLT1J1 LTR MaLR -148 298 127 714 139 35 0 chr4 24739933 24740048 -159548614 - FLAM_C SINE Alu -11 132 14 252 342 89 14 chr4 24740556 24740837 -159547825 - L1ME LINE L1 -297 5824 5523 243 0 0 0 chr4 24740885 24740912 -159547750 + (CA)n Simple_repeat Simple_repeat 2 28 0 267 231 112 0 chr4 24741149 24741254 -159547408 - MIR SINE MIR -68 140 66 270 177 0 198 chr4 24741266 24741362 -159547300 - L2 LINE L2 -2 3311 3235 278 316 162 0 chr4 24742286 24742403 -159546259 - MIR SINE MIR -19 243 108 1999 137 11 0 chr4 24742490 24742794 -159545868 + AluSx SINE Alu 1 307 0 295 384 38 0 chr4 24742796 24742929 -159545733 - MIR3 SINE MIR -31 177 40 569 318 47 35 chr4 24743011 24743266 -159545396 + MIR SINE MIR 3 260 -2 186 357 62 16 chr4 24744728 24744857 -159543805 + MIR SINE MIR 36 170 -92 1162 200 230 36 chr4 24745759 24746256 -159542406 - MLT1E2 LTR MaLR 0 626 62 33 0 0 0 chr4 24746823 24746856 -159541806 + AT_rich Low_complexity Low_complexity 1 33 0 2060 111 0 4 chr4 24746858 24747163 -159541499 + AluSx SINE Alu 4 307 0 1147 142 15 20 chr4 24747175 24747379 -159541283 - MER2 DNA MER2_type -142 203 1 364 194 43 11 chr4 24747546 24747639 -159541023 + MLT1L LTR MaLR 513 608 -7 2253 95 0 3 chr4 24747878 24748173 -159540489 - AluY SINE Alu -17 294 1 262 286 168 30 chr4 24748174 24748377 -159540285 - MIR SINE MIR 0 262 32 199 363 65 8 chr4 24748498 24748622 -159540040 - L2 LINE L2 -18 3295 3165 2029 115 44 3 chr4 24748842 24749137 -159539525 - AluSq SINE Alu -6 307 1 208 294 29 15 chr4 24749361 24749429 -159539233 + MIR SINE MIR 65 133 -129 311 317 33 17 chr4 24750249 24750369 -159538293 + MIR SINE MIR 131 252 -10 200 229 21 21 chr4 24750590 24750638 -159538024 + MIR SINE MIR 65 112 -150 333 268 258 41 chr4 24750658 24751027 -159537635 - L2 LINE L2 0 3313 2865 202 380 56 0 chr4 24751090 24751198 -159537464 + MIR SINE MIR 130 243 -19 348 321 19 0 chr4 24751253 24751359 -159537303 - L2 LINE L2 -2 3311 3204 1684 166 13 36 chr4 24751622 24751930 -159536732 + AluJo SINE Alu 1 301 -11 1575 209 3 31 chr4 24753166 24753259 -159535403 + MLT1A1 LTR MaLR 1 95 -270 2337 136 22 5 chr4 24753259 24753628 -159535034 - THE1C LTR MaLR 0 375 1 1575 209 3 31 chr4 24753628 24753888 -159534774 + MLT1A1 LTR MaLR 95 344 -21 205 369 104 18 chr4 24753943 24754279 -159534383 - L2 LINE L2 -955 2359 1995 621 297 30 42 chr4 24754349 24754585 -159534077 + MIR SINE MIR 17 249 -13 976 186 48 5 chr4 24754665 24754875 -159533787 + L1MD2 LINE L1 6139 6357 -2 271 312 92 50 chr4 24754876 24755094 -159533568 - L2 LINE L2 -1389 1925 1699 200 310 0 0 chr4 24755168 24755226 -159533436 + GA-rich Low_complexity Low_complexity 4 61 0 1340 227 52 45 chr4 24755814 24756237 -159532425 + MLT1D LTR MaLR 80 505 0 236 316 58 58 chr4 24756410 24756616 -159532046 - L2 LINE L2 -2419 895 690 268 296 30 53 chr4 24756786 24756918 -159531744 + MLT1K LTR MaLR 108 236 -352 444 242 83 13 chr4 24756961 24757118 -159531544 + MLT1K LTR MaLR 420 587 -1 2340 108 20 8 chr4 24757619 24757970 -159530692 - THE1A LTR MaLR 0 355 1 11602 95 8 4 chr4 24757970 24759544 -159529118 - THE1A-int LTR MaLR 0 1580 1 2238 116 14 11 chr4 24759544 24759898 -159528764 - THE1A LTR MaLR 0 355 1 267 280 40 0 chr4 24760122 24760197 -159528465 - L2 LINE L2 -25 3247 3170 242 277 15 0 chr4 24760770 24760835 -159527827 + CT-rich Low_complexity Low_complexity 3 68 0 204 40 0 0 chr4 24761524 24761549 -159527113 + (T)n Simple_repeat Simple_repeat 1 25 0 320 119 0 15 chr4 24761951 24762018 -159526644 + L1 LINE L1 4971 5036 -1110 3763 141 8 2 chr4 24762049 24762660 -159526002 + L1PA16 LINE L1 5538 6152 -14 384 341 48 24 chr4 24764243 24764410 -159524252 + L2 LINE L2 3102 3272 0 247 184 20 0 chr4 24765695 24765744 -159522918 + MLT1H LTR MaLR 12 61 -488 294 250 58 0 chr4 24766002 24766106 -159522556 + MLT1H LTR MaLR 434 543 -6 3741 147 75 5 chr4 24766159 24766910 -159521752 - Tigger3(Golem) DNA MER2_type 0 3029 2227 1522 283 49 5 chr4 24767263 24767877 -159520785 + L1ME2 LINE L1 1462 2102 -4294 1398 224 87 16 chr4 24767896 24768275 -159520387 + MLT2D LTR ERVL 8 413 -1 2234 101 30 0 chr4 24768297 24768593 -159520069 + AluSx SINE Alu 1 305 -7 684 228 82 22 chr4 24768595 24768877 -159519785 + L1ME2 LINE L1 2141 2488 -3908 323 318 20 0 chr4 24768911 24769112 -159519550 + L1ME2 LINE L1 2501 2705 -3510 1228 262 57 49 chr4 24769122 24769751 -159518911 + L1ME2 LINE L1 5561 6194 -39 3469 120 11 17 chr4 24769759 24770060 -159518602 - MER1A DNA MER1_type -2173 529 231 2340 118 28 25 chr4 24770060 24770423 -159518239 + THE1B LTR MaLR 1 364 0 3469 120 11 17 chr4 24770423 24770653 -159518009 - MER1A DNA MER1_type -2471 231 1 272 301 32 0 chr4 24772220 24772313 -159516349 + MIR SINE MIR 131 226 -36 411 141 0 24 chr4 24772500 24772585 -159516077 - AluJ/FRAM SINE Alu 0 312 230 1305 222 163 120 chr4 24773604 24774231 -159514431 + MLT1E2 LTR MaLR 1 626 0 5535 261 70 35 chr4 24774650 24774703 -159513959 + L1M2a LINE L1 3 53 -7114 363 60 0 0 chr4 24774703 24774753 -159513909 + (CA)n Simple_repeat Simple_repeat 1 50 0 5535 261 70 35 chr4 24774753 24778302 -159510360 + L1M2a LINE L1 53 3475 -3692 491 115 11 73 chr4 24778328 24778519 -159510143 + (TA)n Simple_repeat Simple_repeat 2 180 0 2327 219 38 25 chr4 24778537 24778998 -159509664 + L1M2a LINE L1 3480 3954 -3213 2330 79 3 3 chr4 24778998 24779303 -159509359 + AluY SINE Alu 1 305 -6 2327 219 38 25 chr4 24779303 24779532 -159509130 + L1M2a LINE L1 3954 4179 -2988 1315 193 0 92 chr4 24779562 24779888 -159508774 + AluJb SINE Alu 9 304 -8 351 65 0 0 chr4 24779888 24779934 -159508728 + (GA)n Simple_repeat Simple_repeat 1 46 0 378 42 0 0 chr4 24779934 24779982 -159508680 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 533 298 96 10 chr4 24780080 24780278 -159508384 + MIR SINE MIR 30 244 -18 428 341 30 0 chr4 24780305 24780472 -159508190 - MIR SINE MIR -5 257 86 767 179 0 14 chr4 24781396 24781536 -159507126 - FLAM_C SINE Alu 0 143 6 380 291 70 70 chr4 24782065 24782350 -159506312 - HAL1b LINE L1 -975 373 89 26 50 0 0 chr4 24782707 24782747 -159505915 + AT_rich Low_complexity Low_complexity 1 40 0 697 236 126 5 chr4 24783605 24783796 -159504866 + MER58C DNA MER1_type 2 215 0 201 39 0 0 chr4 24786670 24786696 -159501966 + (GA)n Simple_repeat Simple_repeat 1 26 0 413 273 20 53 chr4 24787518 24787668 -159500994 - MER5A DNA MER1_type -10 179 35 282 56 0 0 chr4 24787685 24787721 -159500941 + (TG)n Simple_repeat Simple_repeat 1 36 0 218 383 61 9 chr4 24787832 24787947 -159500715 - L2 LINE L2 -575 2739 2619 496 293 56 13 chr4 24788736 24789088 -159499574 + MLT1L LTR MaLR 82 478 -137 231 61 0 0 chr4 24789127 24789160 -159499502 + (TG)n Simple_repeat Simple_repeat 2 34 0 293 331 48 6 chr4 24789656 24789822 -159498840 + MIR SINE MIR 90 262 0 486 274 147 32 chr4 24790305 24790462 -159498200 + MER5A DNA MER1_type 15 189 0 298 216 91 23 chr4 24790694 24790782 -159497880 + MIR SINE MIR 24 117 -145 180 348 37 22 chr4 24791974 24792109 -159496553 - MIR SINE MIR -60 202 66 2203 118 0 16 chr4 24792172 24792476 -159496186 + AluSx SINE Alu 1 299 -13 225 335 78 30 chr4 24794266 24794433 -159494229 - MIR SINE MIR -17 245 71 227 275 29 0 chr4 24795061 24795130 -159493532 - MIR SINE MIR -6 256 186 2065 112 7 7 chr4 24796049 24796352 -159492310 - AluSq SINE Alu -10 303 1 227 310 10 20 chr4 24796353 24796453 -159492209 + MIR SINE MIR 164 262 0 192 152 0 0 chr4 24796861 24796894 -159491768 + L2 LINE L2 3279 3311 -2 229 372 68 14 chr4 24797112 24797260 -159491402 - MIR3 SINE MIR -11 197 42 340 361 45 8 chr4 24797268 24797401 -159491261 - MIR3 SINE MIR -3 205 68 4748 55 26 0 chr4 24797777 24798412 -159490250 + L1PA5 LINE L1 5522 6172 0 984 211 10 19 chr4 24798412 24798620 -159490042 + MER77 LTR ERV1 393 598 -7 809 210 99 8 chr4 24798873 24799135 -159489527 - AluSx SINE Alu -14 288 3 15739 83 11 3 chr4 24800324 24802695 -159485967 + L1P LINE L1 1756 4145 -2001 799 175 13 0 chr4 24802826 24802980 -159485682 + MLT1A2 LTR MaLR 1 156 -218 366 169 40 8 chr4 24802999 24803123 -159485539 + CT-rich Low_complexity Low_complexity 1 128 0 858 176 33 22 chr4 24803145 24803327 -159485335 + MLT1A2 LTR MaLR 189 372 -2 24 0 0 0 chr4 24803345 24803369 -159485293 + AT_rich Low_complexity Low_complexity 1 24 0 761 307 38 4 chr4 24803445 24803683 -159484979 - MIR SINE MIR -1 261 16 962 232 101 37 chr4 24803697 24804133 -159484529 - MLT1C LTR MaLR 0 467 4 226 313 16 8 chr4 24804173 24804301 -159484361 + MLT1A1 LTR MaLR 15 143 -222 14385 27 6 4 chr4 24804979 24807014 -159481648 - L1P2 LINE L1 -558 5597 3560 1096 198 27 31 chr4 24807118 24807375 -159481287 + MLT1A1 LTR MaLR 99 354 -11 200 326 58 0 chr4 24807387 24807473 -159481189 - L2 LINE L2 -619 2695 2605 744 234 41 20 chr4 24807533 24807730 -159480932 + MIR SINE MIR 3 203 -59 26 82 0 0 chr4 24807876 24807937 -159480725 + AT_rich Low_complexity Low_complexity 1 61 0 2289 104 0 0 chr4 24808012 24808299 -159480363 + AluSc SINE Alu 1 287 -22 207 0 0 0 chr4 24808839 24808862 -159479800 + (T)n Simple_repeat Simple_repeat 1 23 0 766 361 81 48 chr4 24808868 24809907 -159478755 - L2 LINE L2 -624 2690 1597 1567 149 17 64 chr4 24809907 24810241 -159478421 + AluJo SINE Alu 3 322 0 766 361 81 48 chr4 24810241 24810483 -159478179 - L2 LINE L2 -1717 1597 1365 520 325 75 13 chr4 24810600 24810828 -159477834 + MLT1G LTR MaLR 35 276 -314 1433 219 53 35 chr4 24810830 24811205 -159477457 - MLT1B LTR MaLR 0 390 9 2178 112 0 0 chr4 24811762 24812058 -159476604 + AluSc SINE Alu 4 299 -10 2450 94 0 0 chr4 24812810 24813119 -159475543 - AluY SINE Alu -2 309 1 256 390 73 12 chr4 24813254 24813418 -159475244 + L2 LINE L2 2550 2723 -591 978 249 24 37 chr4 24813427 24813724 -159474938 + L2 LINE L2 2175 2467 -847 351 277 39 69 chr4 24813727 24813857 -159474805 - MIR SINE MIR -135 127 2 253 398 8 8 chr4 24814136 24814264 -159474398 + MIR3 SINE MIR 34 161 -47 413 235 142 29 chr4 24814817 24814998 -159473664 - MIR SINE MIR -56 206 9 24 0 0 0 chr4 24816363 24816387 -159472275 + AT_rich Low_complexity Low_complexity 1 24 0 229 274 70 27 chr4 24816670 24816811 -159471851 + MIR SINE MIR 56 207 -55 1446 105 0 25 chr4 24816942 24817163 -159471499 + AluSg/x SINE Alu 95 312 0 351 295 102 12 chr4 24817961 24818127 -159470535 - L2 LINE L2 -16 3297 3117 500 286 77 43 chr4 24818729 24818963 -159469699 + L2 LINE L2 1914 2155 -1159 618 324 29 12 chr4 24818973 24819214 -159469448 + MIR SINE MIR 12 256 -6 1333 344 69 20 chr4 24819226 24820052 -159468610 + L2 LINE L2 2179 3047 -266 2038 155 6 3 chr4 24820125 24820466 -159468196 - MLT2C1 LTR ERVL -55 342 1 290 333 39 34 chr4 24820498 24820702 -159467960 + L2 LINE L2 3098 3302 -11 26 0 0 0 chr4 24821269 24821295 -159467367 + AT_rich Low_complexity Low_complexity 1 26 0 225 0 0 0 chr4 24821308 24821333 -159467329 + (TA)n Simple_repeat Simple_repeat 1 25 0 1927 149 3 26 chr4 24821333 24821635 -159467027 - AluSx SINE Alu -17 295 1 329 248 114 0 chr4 24822068 24822215 -159466447 + MLT1J2 LTR MaLR 9 148 -302 311 283 0 0 chr4 24822945 24823065 -159465597 + (TA)n Simple_repeat Simple_repeat 2 121 0 197 83 28 0 chr4 24823124 24823160 -159465502 + (TA)n Simple_repeat Simple_repeat 1 37 0 218 233 0 0 chr4 24823284 24823327 -159465335 + (TAA)n Simple_repeat Simple_repeat 3 45 0 242 231 204 20 chr4 24823328 24823475 -159465187 - MIR SINE MIR 0 262 89 2217 200 155 10 chr4 24823533 24824024 -159464638 + MER68 LTR ERV1 1 562 0 708 300 103 13 chr4 24824064 24824444 -159464218 + MLT1J2 LTR MaLR 37 450 0 409 343 87 27 chr4 24824894 24825113 -159463549 - L2 LINE L2 0 3272 3041 378 341 40 48 chr4 24825124 24825476 -159463186 + L2 LINE L2 2432 2780 -534 187 294 119 57 chr4 24825898 24826075 -159462587 - L2 LINE L2 -262 3010 2823 308 317 0 0 chr4 24826110 24826192 -159462470 + L2 LINE L2 3226 3307 -6 243 0 0 0 chr4 24826226 24826253 -159462409 + (A)n Simple_repeat Simple_repeat 1 27 0 236 349 65 62 chr4 24826253 24826556 -159462106 - L2 LINE L2 -561 2753 2447 1973 152 7 0 chr4 24826556 24826852 -159461810 - AluSx SINE Alu -14 298 1 236 349 65 62 chr4 24826852 24826889 -159461773 - L2 LINE L2 -867 2447 2412 1777 159 0 0 chr4 24827092 24827375 -159461287 + AluSx SINE Alu 1 283 -29 198 0 0 0 chr4 24827379 24827401 -159461261 + (CACAA)n Simple_repeat Simple_repeat 4 25 0 246 184 0 0 chr4 24827451 24827500 -159461162 - MADE1 DNA Mariner 0 80 32 740 122 0 0 chr4 24827802 24827934 -159460728 + AluSg/x SINE Alu 176 307 0 460 136 0 12 chr4 24827984 24828065 -159460597 - MADE1 DNA Mariner 0 80 1 184 339 15 0 chr4 24828644 24828709 -159459953 - MIR SINE MIR -61 147 82 678 228 29 19 chr4 24829577 24829783 -159458879 + LTR7 LTR ERV1 238 445 -5 835 290 60 39 chr4 24829846 24830229 -159458433 + MLT1E3 LTR MaLR 200 621 -3 212 86 29 0 chr4 24830831 24830866 -159457796 + (CA)n Simple_repeat Simple_repeat 2 37 0 668 286 17 0 chr4 24830990 24831165 -159457497 + MER5B DNA MER1_type 1 178 0 942 175 0 29 chr4 24831504 24831675 -159456987 + MER5A DNA MER1_type 1 166 -23 291 342 12 19 chr4 24832448 24832695 -159455967 + GA-rich Low_complexity Low_complexity 1 245 0 229 383 25 25 chr4 24833978 24834098 -159454564 + L2 LINE L2 3132 3251 -21 4506 88 32 1 chr4 24835211 24835872 -159452790 - L1PA11 LINE L1 0 6174 5494 695 165 0 0 chr4 24836076 24836219 -159452443 + AluJb SINE Alu 167 309 0 7809 171 11 9 chr4 24836275 24838822 -159449840 + L1PB1 LINE L1 3607 6150 -1 277 269 0 0 chr4 24839191 24839269 -159449393 - MER103 DNA DNA -87 79 2 394 304 48 18 chr4 24841551 24841719 -159446943 - MIR SINE MIR -8 254 82 224 352 67 0 chr4 24841907 24842012 -159446650 + L2 LINE L2 1753 1864 -1450 406 139 212 16 chr4 24842015 24842105 -159446557 + MLT1B LTR MaLR 6 109 -265 2441 82 3 9 chr4 24842105 24842420 -159446242 + AluSq SINE Alu 1 313 0 406 139 212 16 chr4 24842420 24842436 -159446226 + MLT1B LTR MaLR 109 121 -253 714 185 17 5 chr4 24842458 24842607 -159446055 + MLT1B LTR MaLR 240 390 0 507 232 40 81 chr4 24842700 24842898 -159445764 - MIR SINE MIR -65 197 8 580 281 9 62 chr4 24842937 24843161 -159445501 - MIR SINE MIR -44 218 7 2138 145 6 0 chr4 24844305 24844616 -159444046 - AluSq SINE Alu 0 313 1 2066 133 0 0 chr4 24846149 24846465 -159442197 - AluSg SINE Alu 0 318 3 3115 106 12 33 chr4 24846832 24847208 -159441454 + L1PA13 LINE L1 5678 6043 -120 3230 162 32 68 chr4 24847208 24847925 -159440737 - LTR8 LTR ERV1 0 691 1 3115 106 12 33 chr4 24847925 24848037 -159440625 + L1PA13 LINE L1 6043 6156 -7 312 311 0 0 chr4 24848124 24848214 -159440448 + L1MC4 LINE L1 6614 6703 -1339 350 293 0 13 chr4 24848224 24848381 -159440281 + (TATATG)n Simple_repeat Simple_repeat 5 159 0 239 259 47 0 chr4 24848393 24848478 -159440184 + L1MC4 LINE L1 6615 6703 -1339 213 233 33 0 chr4 24848479 24848569 -159440093 + (TA)n Simple_repeat Simple_repeat 2 94 0 489 257 74 64 chr4 24848570 24848772 -159439890 - MIR SINE MIR -57 205 2 268 366 24 16 chr4 24849262 24849385 -159439277 - MIR SINE MIR -108 154 31 26 0 0 0 chr4 24849581 24849607 -159439055 + AT_rich Low_complexity Low_complexity 1 26 0 2062 203 67 9 chr4 24849608 24850144 -159438518 + L1MA9 LINE L1 5704 6270 -42 7506 192 17 19 chr4 24850174 24851913 -159436749 + L1PA16 LINE L1 3477 5207 -959 2372 47 40 0 chr4 24851913 24852211 -159436451 + L1PA4 LINE L1 5846 6155 0 7506 192 17 19 chr4 24852211 24853169 -159435493 + L1PA16 LINE L1 5207 6165 -1 272 230 137 108 chr4 24853489 24853628 -159435034 + MIR SINE MIR 108 250 -12 202 146 0 49 chr4 24853596 24853637 -159435025 + L2 LINE L2 3264 3302 -11 * 257 323 0 10 chr4 24853790 24853889 -159434773 + MIR SINE MIR 92 189 -73 738 309 42 8 chr4 24853976 24854212 -159434450 + MIR SINE MIR 18 261 -1 316 259 101 29 chr4 24854175 24854314 -159434348 - MIR SINE MIR -33 229 81 * 2098 135 125 13 chr4 24854314 24854699 -159433963 + MSTA LTR MaLR 1 428 0 529 269 8 8 chr4 24855298 24855432 -159433230 - L2 LINE L2 0 3313 3180 519 344 11 0 chr4 24855426 24855609 -159433053 - L2 LINE L2 -981 2333 2149 * 21 0 0 0 chr4 24855640 24855661 -159433001 + AT_rich Low_complexity Low_complexity 1 21 0 345 356 68 5 chr4 24857344 24857549 -159431113 + MIR SINE MIR 2 219 -43 751 286 64 5 chr4 24858241 24858461 -159430201 - MIR SINE MIR 0 262 30 272 292 42 46 chr4 24858772 24858947 -159429715 + MIR3 SINE MIR 13 189 -73 676 234 59 42 chr4 24859432 24859671 -159428991 + MIR SINE MIR 15 257 -5 183 333 0 42 chr4 24860488 24860560 -159428102 - MIR SINE MIR -74 134 66 2279 73 7 23 chr4 24860752 24861052 -159427610 - AluSc SINE Alu -14 295 1 343 305 134 6 chr4 24861199 24861363 -159427299 + LTR33 LTR ERVL 39 223 -298 481 266 126 22 chr4 24861394 24861616 -159427046 + LTR33 LTR ERVL 276 520 -1 313 295 98 18 chr4 24861639 24861751 -159426911 + MIR SINE MIR 22 142 -66 211 383 0 26 chr4 24861983 24862098 -159426564 + MIR SINE MIR 33 144 -118 288 259 306 7 chr4 24862264 24862411 -159426251 + MIR SINE MIR 13 203 -59 452 290 140 45 chr4 24862520 24862855 -159425807 + L2 LINE L2 2945 3311 -2 481 283 63 63 chr4 24864025 24864294 -159424368 + L1ME4a LINE L1 5616 5884 -237 347 196 105 98 chr4 24865168 24865229 -159423433 + L2 LINE L2 3168 3227 -86 186 71 0 0 chr4 24865229 24865257 -159423405 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 347 196 105 98 chr4 24865257 24865338 -159423324 + L2 LINE L2 3227 3311 -2 1815 154 85 6 chr4 24865861 24866192 -159422470 + MLT2C1 LTR ERVL 1 357 -40 261 129 43 29 chr4 24866194 24866264 -159422398 + (TATATG)n Simple_repeat Simple_repeat 1 71 0 279 105 0 0 chr4 24866270 24866308 -159422354 + MLT2C1 LTR ERVL 360 397 0 312 283 148 49 chr4 24868023 24868246 -159420416 + L2 LINE L2 2701 2945 -369 192 314 0 0 chr4 24868281 24868332 -159420330 + L2 LINE L2 3222 3272 0 1252 76 5 103 chr4 24868403 24868626 -159420036 - L1PA8 LINE L1 -13 6159 5959 2170 119 24 0 chr4 24868888 24869182 -159419480 - AluSx SINE Alu -11 301 1 3274 134 59 35 chr4 24869290 24869881 -159418781 + LTR8A LTR ERV1 123 727 0 252 268 103 21 chr4 24869881 24869978 -159418684 + MIR SINE MIR 155 259 -3 315 341 39 16 chr4 24870006 24870135 -159418527 + L2 LINE L2 2916 3047 -225 426 348 59 16 chr4 24870271 24870593 -159418069 + L1MEc LINE L1 772 1107 -6031 1478 290 98 27 chr4 24871033 24871586 -159417076 + L1MEc LINE L1 1331 1843 -5295 234 0 0 0 chr4 24871586 24871612 -159417050 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1478 290 98 27 chr4 24871612 24872434 -159416228 + L1MEc LINE L1 1843 2991 -4147 316 315 22 0 chr4 24872442 24872531 -159416131 + L2 LINE L2 3222 3312 -1 524 307 27 70 chr4 24874296 24874625 -159414037 - L2 LINE L2 0 3313 2999 189 217 22 0 chr4 24874659 24874705 -159413957 + L2 LINE L2 3261 3307 -6 2144 107 0 0 chr4 24875507 24875812 -159412850 + AluSc SINE Alu 1 305 0 581 88 0 0 chr4 24875948 24876028 -159412634 - MADE1 DNA Mariner 0 80 1 205 189 16 74 chr4 24876558 24876748 -159411914 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 296 291 55 39 chr4 24877168 24877295 -159411367 - MER94 DNA DNA 0 134 6 210 313 30 0 chr4 24877536 24877603 -159411059 + MIR SINE MIR 53 121 -141 1924 153 0 3 chr4 24877605 24877906 -159410756 - AluJo SINE Alu -12 300 1 25 0 0 0 chr4 24878048 24878073 -159410589 + AT_rich Low_complexity Low_complexity 1 25 0 1951 100 0 0 chr4 24878104 24878354 -159410308 - AluSq SINE Alu -54 259 10 432 263 8 34 chr4 24878743 24878861 -159409801 - L2 LINE L2 -499 2815 2701 189 288 38 50 chr4 24878900 24878980 -159409682 - L2 LINE L2 -86 3227 3149 369 291 108 44 chr4 24879098 24879301 -159409361 - MIR SINE MIR -44 218 3 245 233 68 68 chr4 24879588 24879691 -159408971 + MIR SINE MIR 121 223 -39 188 296 91 45 chr4 24879819 24879907 -159408755 - L2 LINE L2 0 3313 3222 278 285 41 65 chr4 24879944 24880067 -159408595 + MER5B DNA MER1_type 9 128 -50 533 298 29 22 chr4 24880119 24880389 -159408273 + Charlie8 DNA MER1_type 3 265 -2152 327 193 0 0 chr4 24880419 24880476 -159408186 + Charlie8 DNA MER1_type 1351 1407 -1010 1768 224 57 9 chr4 24880515 24880956 -159407706 + MLT1C LTR MaLR 6 467 0 319 294 25 0 chr4 24881472 24881591 -159407071 + L2 LINE L2 2934 3055 -258 1592 168 28 88 chr4 24881663 24882061 -159406601 + MLT1B LTR MaLR 1 374 -16 2465 171 77 21 chr4 24882061 24882540 -159406122 + MLT2B2 LTR ERVL 1 506 -9 484 281 54 30 chr4 24882702 24882869 -159405793 + L2 LINE L2 3120 3290 -23 222 106 30 30 chr4 24882923 24882989 -159405673 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 285 325 122 21 chr4 24883006 24883194 -159405468 - MIR SINE MIR -7 255 49 308 289 48 0 chr4 24884579 24884662 -159404000 + L2 LINE L2 3227 3313 0 410 264 186 0 chr4 24885536 24885665 -159402997 + MER5A DNA MER1_type 36 188 -1 510 230 79 0 chr4 24885849 24885975 -159402687 + MIR SINE MIR 56 191 -71 2248 122 0 0 chr4 24886690 24887002 -159401660 - AluSq SINE Alu -1 312 1 568 101 0 0 chr4 24887546 24887625 -159401037 - MER4E LTR ERV1 -154 612 534 2588 102 3 0 chr4 24887652 24888006 -159400656 + MER4E LTR ERV1 412 766 0 315 164 0 0 chr4 24888490 24888551 -159400111 + (TA)n Simple_repeat Simple_repeat 1 61 0 195 100 0 0 chr4 24889076 24889106 -159399556 + (GGA)n Simple_repeat Simple_repeat 3 32 0 1451 161 28 35 chr4 24889264 24889549 -159399113 - MLT1B LTR MaLR 0 390 108 1930 151 0 31 chr4 24889683 24890002 -159398660 - AluSg SINE Alu -1 309 1 609 175 26 0 chr4 24890066 24890180 -159398482 - MLT1B LTR MaLR -272 118 2 360 200 30 0 chr4 24890228 24890328 -159398334 + CT-rich Low_complexity Low_complexity 2 104 0 194 281 16 78 chr4 24891010 24891138 -159397524 - L2 LINE L2 -849 2465 2346 * 413 245 38 19 chr4 24891137 24891243 -159397419 + L2 LINE L2 3200 3307 -6 335 311 60 20 chr4 24891521 24891672 -159396990 + MIR SINE MIR 52 208 -54 1260 52 0 0 chr4 24891898 24892051 -159396611 - AluY SINE Alu -10 301 149 2274 94 10 0 chr4 24892278 24892577 -159396085 - AluSg SINE Alu -8 302 1 453 296 21 32 chr4 24892931 24893117 -159395545 + MIR SINE MIR 79 262 0 402 235 66 12 chr4 24893162 24893328 -159395334 + L1ME4a LINE L1 5722 5896 -225 231 133 0 0 chr4 24894440 24894485 -159394177 + (TG)n Simple_repeat Simple_repeat 2 46 0 820 206 15 15 chr4 24896402 24896606 -159392056 + L1MB5 LINE L1 4171 4374 -1772 4066 188 30 29 chr4 24896655 24897743 -159390919 + L1MB5 LINE L1 5086 6173 -1 749 219 93 61 chr4 24897853 24898056 -159390606 + MIR SINE MIR 7 221 -41 2443 84 0 3 chr4 24898056 24898365 -159390297 + AluSq SINE Alu 1 308 -5 749 219 93 61 chr4 24898365 24898407 -159390255 + MIR SINE MIR 221 260 -2 1769 166 75 7 chr4 24898452 24898759 -159389903 + MLT1A1 LTR MaLR 23 350 -15 23 0 0 0 chr4 24898763 24898786 -159389876 + AT_rich Low_complexity Low_complexity 1 23 0 204 171 24 0 chr4 24899857 24899898 -159388764 + (TA)n Simple_repeat Simple_repeat 1 42 0 612 0 0 0 chr4 24901168 24901236 -159387426 + (TA)n Simple_repeat Simple_repeat 1 68 0 1879 117 33 4 chr4 24901239 24901512 -159387150 - AluSc SINE Alu -28 281 1 342 200 50 0 chr4 24901896 24901976 -159386686 + AluS SINE Alu 1 84 -219 199 330 230 21 chr4 24902289 24902528 -159386134 - L3b LINE CR1 0 1583 1295 338 330 9 0 chr4 24902747 24902853 -159385809 - L2 LINE L2 -10 3303 3197 2412 75 0 0 chr4 24903610 24903915 -159384747 + AluY SINE Alu 4 308 -3 184 154 0 51 chr4 24903965 24904004 -159384658 + L2 LINE L2 3268 3304 -9 231 312 44 92 chr4 24904838 24904895 -159383767 - L2 LINE L2 -568 2746 2688 2241 99 10 0 chr4 24904895 24905199 -159383463 + AluSg SINE Alu 1 307 -3 231 312 44 92 chr4 24905199 24905391 -159383271 - L2 LINE L2 -626 2688 2509 342 200 44 59 chr4 24906078 24906213 -159382449 + Charlie2 DNA MER1_type 2714 2846 -16 210 313 0 30 chr4 24906248 24906315 -159382347 + MIR SINE MIR 31 95 -113 1994 196 21 18 chr4 24906319 24906702 -159381960 + MLT2B1 LTR ERVL 1 376 -38 462 114 0 0 chr4 24906702 24906772 -159381890 + (TCTA)n Simple_repeat Simple_repeat 2 71 0 1994 196 21 18 chr4 24906772 24906812 -159381850 + MLT2B1 LTR ERVL 376 414 0 253 308 0 0 chr4 24906819 24906884 -159381778 + MIR3 SINE MIR 98 162 -46 192 125 0 0 chr4 24907139 24907171 -159381491 + (TG)n Simple_repeat Simple_repeat 1 32 0 286 370 44 5 chr4 24907188 24907391 -159381271 - MARNA DNA Mariner -366 220 10 216 195 169 13 chr4 24908698 24908775 -159379887 + L2 LINE L2 3184 3272 0 206 333 173 0 chr4 24908981 24909056 -159379606 - L2 LINE L2 -48 3224 3137 380 219 135 0 chr4 24909239 24909335 -159379327 - MER105 DNA DNA -45 159 51 3215 106 101 4 chr4 24909415 24909908 -159378754 + MER41A LTR ERV1 14 554 0 2267 212 27 25 chr4 24909939 24910420 -159378242 - MER68 LTR ERV1 -80 482 1 2050 131 6 22 chr4 24911148 24911462 -159377200 - AluSg SINE Alu -1 309 1 9648 207 54 19 chr4 24912480 24915362 -159373300 + L1MA9 LINE L1 2806 5797 -515 327 65 0 0 chr4 24915362 24915408 -159373254 + (CA)n Simple_repeat Simple_repeat 2 47 0 9648 207 54 19 chr4 24915408 24915424 -159373238 + L1MA9 LINE L1 5797 5811 -501 575 206 0 0 chr4 24915525 24915622 -159373040 - MER7A DNA MER2_type -251 95 1 634 193 28 42 chr4 24915622 24915834 -159372828 + L1MA9 LINE L1 5905 6113 -199 236 238 0 81 chr4 24915985 24916170 -159372492 + (TATAA)n Simple_repeat Simple_repeat 3 172 0 * 278 268 36 18 chr4 24916101 24916269 -159372393 + (TATAG)n Simple_repeat Simple_repeat 4 174 0 210 270 11 65 chr4 24916183 24916368 -159372294 + (TATAA)n Simple_repeat Simple_repeat 3 177 0 * 406 219 73 46 chr4 24916392 24916543 -159372119 + L1MA9 LINE L1 6119 6273 -39 2013 153 7 0 chr4 24916828 24917135 -159371527 + AluSx SINE Alu 3 311 -1 180 111 0 0 chr4 24917599 24917626 -159371036 + (A)n Simple_repeat Simple_repeat 1 27 0 225 383 30 35 chr4 24918235 24918465 -159370197 + L2 LINE L2 1942 2170 -1144 * 585 208 28 56 chr4 24918459 24918637 -159370025 - L2 LINE L2 -42 3271 3099 1332 221 83 47 chr4 24918638 24919081 -159369581 - MLT1C LTR MaLR 0 467 9 266 333 176 15 chr4 24919144 24919405 -159369257 + L2 LINE L2 2301 2603 -711 345 280 63 14 chr4 24919772 24919915 -159368747 - MIR SINE MIR -19 243 94 229 274 0 0 chr4 24920210 24920261 -159368401 - L2 LINE L2 0 3272 3222 2542 77 0 0 chr4 24921085 24921396 -159367266 - AluY SINE Alu 0 311 1 193 390 38 9 chr4 24922746 24922959 -159365703 + L2 LINE L2 1763 1981 -1333 2110 115 14 0 chr4 24923226 24923534 -159365128 - AluSc SINE Alu 0 312 1 326 373 84 3 chr4 24923536 24923820 -159364842 + L2 LINE L2 2356 2662 -652 367 344 60 67 chr4 24923958 24924289 -159364373 + L2 LINE L2 2924 3252 -20 361 348 70 0 chr4 24924752 24924939 -159363723 + MIR SINE MIR 21 220 -42 390 253 129 47 chr4 24925798 24925968 -159362694 - L2 LINE L2 -13 3300 3117 216 336 136 9 chr4 24926159 24926269 -159362393 - MIR SINE MIR -115 147 24 430 291 8 8 chr4 24926353 24926480 -159362182 - MIR SINE MIR -48 214 88 2550 74 0 0 chr4 24926523 24926834 -159361828 - AluSq SINE Alu -2 311 1 506 290 118 5 chr4 24927370 24927556 -159361106 - MIR SINE MIR -15 247 41 250 233 89 44 chr4 24927872 24927962 -159360700 + MIR SINE MIR 87 180 -82 432 198 167 62 chr4 24928965 24929127 -159359535 + MER5A DNA MER1_type 11 189 0 435 346 135 10 chr4 24929882 24930392 -159358270 - L2 LINE L2 0 3313 2745 181 238 0 24 chr4 24930539 24930581 -159358081 - MIR SINE MIR -14 248 208 221 336 36 27 chr4 24930750 24930860 -159357802 + MER5A DNA MER1_type 52 162 -27 1992 140 0 0 chr4 24931045 24931331 -159357331 - AluSx SINE Alu -26 286 1 349 267 119 20 chr4 24931754 24931855 -159356807 + MIR SINE MIR 40 150 -58 5196 22 0 0 chr4 24933272 24933893 -159354769 + L1PA3 LINE L1 5544 6164 0 237 159 114 11 chr4 24933908 24933996 -159354666 - MER69 DNA AcHobo -124 2402 2306 770 243 11 23 chr4 24934802 24934979 -159353683 + MLT1A2 LTR MaLR 17 191 -183 770 211 62 10 chr4 24935012 24935206 -159353456 + MLT1B LTR MaLR 187 390 0 236 338 15 0 chr4 24935833 24935901 -159352761 + L2 LINE L2 3228 3296 -17 29 0 0 0 chr4 24936543 24936572 -159352090 + AT_rich Low_complexity Low_complexity 1 29 0 1779 207 19 11 chr4 24936617 24936979 -159351683 - MLT1A1 LTR MaLR 0 365 1 198 267 0 144 chr4 24937204 24937254 -159351408 + L2 LINE L2 3237 3270 -43 1644 156 27 34 chr4 24937254 24937549 -159351113 + AluSx SINE Alu 3 295 -17 198 267 0 144 chr4 24937549 24937588 -159351074 + L2 LINE L2 3270 3313 0 441 331 40 0 chr4 24938528 24938676 -159349986 - MER117 DNA MER1_type -43 154 1 218 254 17 17 chr4 24939182 24939241 -159349421 - L3 LINE CR1 -513 1064 1006 312 301 44 22 chr4 24939286 24939422 -159349240 + MIR3 SINE MIR 55 193 -15 1953 94 0 4 chr4 24940123 24940378 -159348284 + AluY SINE Alu 39 292 -19 219 204 0 54 chr4 24940881 24940974 -159347688 + A-rich Low_complexity Low_complexity 3 90 0 393 255 10 10 chr4 24941257 24941355 -159347307 - MIR SINE MIR -118 144 47 489 317 154 9 chr4 24943617 24943844 -159344818 + MIR SINE MIR 3 262 0 377 306 223 8 chr4 24944537 24944779 -159343883 - L2 LINE L2 0 3313 3020 214 273 73 0 chr4 24946796 24946851 -159341811 + MIR SINE MIR 94 152 -110 2144 117 3 19 chr4 24946903 24947219 -159341443 + AluSx SINE Alu 1 311 -1 23 0 0 0 chr4 24947758 24947781 -159340881 + AT_rich Low_complexity Low_complexity 1 23 0 279 308 119 53 chr4 24947935 24948162 -159340500 - MIR SINE MIR -12 250 9 201 344 86 20 chr4 24950357 24950508 -159338154 + MIR SINE MIR 7 167 -95 373 375 58 17 chr4 24950685 24950925 -159337737 - MIR SINE MIR -11 251 2 7318 46 3 0 chr4 24951145 24952803 -159335859 + L1PA6 LINE L1 4492 6153 -1 283 315 113 6 chr4 24953344 24953409 -159335253 + L1ME LINE L1 5516 5573 -548 252 59 0 0 chr4 24953409 24953443 -159335219 + (TG)n Simple_repeat Simple_repeat 1 34 0 283 315 113 6 chr4 24953443 24953704 -159334958 + L1ME LINE L1 5573 5877 -244 2443 58 0 0 chr4 24953811 24954105 -159334557 - AluY SINE Alu -17 294 1 874 183 22 79 chr4 24954354 24954583 -159334079 + MER20 DNA MER1_type 4 219 0 25 0 0 0 chr4 24954597 24954622 -159334040 + AT_rich Low_complexity Low_complexity 1 25 0 313 354 91 52 chr4 24954736 24955100 -159333562 - L2 LINE L2 -83 3189 2812 7396 147 16 16 chr4 24955265 24956532 -159332130 - Tigger1 DNA MER2_type 0 2418 1072 270 196 43 43 chr4 24956530 24956622 -159332040 - LTR30 LTR ERV1 -79 643 552 * 1452 144 0 0 chr4 24956649 24956878 -159331784 + Tigger1 DNA MER2_type 1634 1862 -556 6766 144 28 19 chr4 24956878 24958022 -159330640 - Tigger1 DNA MER2_type -1259 1159 6 194 311 14 40 chr4 24958654 24958728 -159329934 + L2 LINE L2 3201 3272 0 692 259 47 30 chr4 24958807 24959043 -159329619 - MIR SINE MIR -11 251 12 954 252 102 16 chr4 24959612 24959926 -159328736 + MER58B DNA MER1_type 1 341 0 830 219 39 6 chr4 24960018 24960196 -159328466 + MER5A DNA MER1_type 1 184 -5 392 311 132 20 chr4 24960319 24960485 -159328177 - MIR SINE MIR -62 146 3 2170 207 50 32 chr4 24960503 24960699 -159327963 + MER90 LTR ERV1 2 193 -382 2228 114 3 0 chr4 24960699 24960997 -159327665 - AluSp SINE Alu -14 299 1 2170 207 50 32 chr4 24960997 24961360 -159327302 + MER90 LTR ERV1 193 571 -4 190 340 0 0 chr4 24962271 24962321 -159326341 - L2 LINE L2 -20 3252 3203 396 361 21 82 chr4 24962495 24962786 -159325876 + L2 LINE L2 2993 3265 -7 251 253 84 21 chr4 24962814 24962909 -159325753 + L1MC5 LINE L1 7831 7931 -30 212 240 60 0 chr4 24963206 24963256 -159325406 + L2 LINE L2 2598 2650 -664 2524 56 0 0 chr4 24963256 24963562 -159325100 - AluY SINE Alu -5 306 1 220 287 56 98 chr4 24964018 24964161 -159324501 + L2 LINE L2 3155 3291 -22 312 362 33 20 chr4 24965367 24965519 -159323143 + MIR3 SINE MIR 6 159 -49 302 280 65 65 chr4 24969018 24969232 -159319430 + MIR SINE MIR 40 253 -9 260 283 0 147 chr4 24969183 24969381 -159319281 - MIR SINE MIR 0 262 94 * 242 344 102 8 chr4 24969423 24969551 -159319111 - L2 LINE L2 0 3272 3133 326 302 139 0 chr4 24969751 24969920 -159318742 + MIR SINE MIR 36 226 -36 477 182 114 0 chr4 24971003 24971091 -159317571 + FLAM_C SINE Alu 21 118 -25 444 318 35 12 chr4 24971326 24971499 -159317163 - MIR SINE MIR -35 227 51 391 314 73 65 chr4 24971513 24971583 -159317079 - MIR SINE MIR 0 262 194 2465 59 0 10 chr4 24971583 24971889 -159316773 + AluY SINE Alu 1 303 -8 391 314 73 65 chr4 24971889 24972066 -159316596 - MIR SINE MIR -68 194 13 1117 206 93 102 chr4 24972574 24973141 -159315521 + MER34B LTR ERV1 4 565 0 28 29 0 0 chr4 24973169 24973204 -159315458 + AT_rich Low_complexity Low_complexity 1 35 0 1762 172 40 0 chr4 24973554 24973850 -159314812 + AluJb SINE Alu 1 308 -4 2097 138 136 5 chr4 25024816 25025192 -159263470 + MSTA LTR MaLR 4 428 0 429 231 35 14 chr4 25025193 25025336 -159263326 - MER104 DNA Tc2 -8 172 27 266 301 66 66 chr4 25025348 25025544 -159263118 + L2 LINE L2 2524 2719 -595 281 277 102 97 chr4 25025668 25026029 -159262633 + L2 LINE L2 2949 3311 -2 22 0 0 0 chr4 25026318 25026340 -159262322 + AT_rich Low_complexity Low_complexity 1 22 0 220 346 0 0 chr4 25026882 25026960 -159261702 - L2 LINE L2 -5 3267 3190 218 467 0 0 chr4 25027077 25027182 -159261480 - MIR SINE MIR -60 148 44 1824 168 20 6 chr4 25027279 25027625 -159261037 - MLT1A1 LTR MaLR -11 354 4 434 293 24 8 chr4 25027640 25027763 -159260899 - MIR SINE MIR -106 156 32 267 277 50 10 chr4 25027843 25027944 -159260718 - MIR SINE MIR -4 258 154 198 0 0 0 chr4 25028089 25028111 -159260551 + (A)n Simple_repeat Simple_repeat 1 22 0 208 139 0 0 chr4 25029140 25029176 -159259486 + (A)n Simple_repeat Simple_repeat 1 36 0 573 314 13 31 chr4 25029270 25029499 -159259163 - MIR SINE MIR -20 242 18 469 235 25 43 chr4 25030700 25030863 -159257799 + MER69A DNA AcHobo 1 160 -17 251 114 23 0 chr4 25030983 25031027 -159257635 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 22 35 0 0 chr4 25031584 25031613 -159257049 + AT_rich Low_complexity Low_complexity 1 29 0 465 280 104 31 chr4 25031632 25031825 -159256837 - MIR SINE MIR -25 237 31 351 248 200 0 chr4 25031825 25031930 -159256732 - MER5B DNA MER1_type 0 178 53 25 0 0 0 chr4 25031930 25031955 -159256707 + GC_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 25032070 25032092 -159256570 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr4 25032463 25032487 -159256175 + GC_rich Low_complexity Low_complexity 1 24 0 1887 203 5 20 chr4 25033418 25033812 -159254850 + MER89 LTR ERV1 172 559 0 1842 163 73 16 chr4 25035343 25035529 -159253133 - MLT1B LTR MaLR 0 390 216 1818 174 29 27 chr4 25035529 25035903 -159252759 - THE1C LTR MaLR 0 375 1 1842 163 73 16 chr4 25035903 25036085 -159252577 - MLT1B LTR MaLR -174 216 1 322 265 84 14 chr4 25036702 25036847 -159251815 + MIR SINE MIR 68 232 -30 21 0 0 0 chr4 25037570 25037591 -159251071 + AT_rich Low_complexity Low_complexity 1 21 0 1916 121 28 17 chr4 25038041 25038331 -159250331 + AluY SINE Alu 1 293 -18 425 272 9 18 chr4 25038370 25038484 -159250178 - L2 LINE L2 -1 3312 3200 1503 193 39 89 chr4 25038553 25038747 -159249915 - Charlie1b DNA MER1_type -2240 521 319 1265 209 58 66 chr4 25038747 25039124 -159249538 + MLT1A2 LTR MaLR 1 374 0 1503 193 39 89 chr4 25039124 25039467 -159249195 - Charlie1b DNA MER1_type -2442 319 11 23625 45 1 3 chr4 25039568 25042609 -159246053 - L1P LINE L1 -3112 3034 1 1306 213 75 7 chr4 25043494 25043799 -159244863 + MLT1A1 LTR MaLR 40 365 0 514 27 14 14 chr4 25044880 25044953 -159243709 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 678 189 6 88 chr4 25046990 25047489 -159241173 - MER5A DNA MER1_type 0 189 44 2097 107 4 0 chr4 25047038 25047381 -159241281 - AluSg SINE Alu 0 344 1 246 254 85 107 chr4 25047381 25047509 -159241153 + MER5A DNA MER1_type 63 189 0 201 74 0 0 chr4 25048484 25048511 -159240151 + (A)n Simple_repeat Simple_repeat 1 27 0 294 310 46 0 chr4 25048567 25048654 -159240008 - MIR3 SINE MIR -41 167 77 536 297 55 6 chr4 25048875 25049057 -159239605 + L2 LINE L2 2887 3077 -195 394 268 16 0 chr4 25049131 25049254 -159239408 + LTR16C LTR ERVL 360 484 -7 462 286 50 0 chr4 25049421 25049540 -159239122 + L2 LINE L2 3188 3312 -1 275 268 22 87 chr4 25050386 25050524 -159238138 + L2 LINE L2 3185 3313 0 271 314 10 10 chr4 25050744 25050846 -159237816 + MIR SINE MIR 91 192 -70 2136 135 26 0 chr4 25050851 25051199 -159237463 + THE1B LTR MaLR 1 357 -7 303 273 7 101 chr4 25051251 25051390 -159237272 - MIR SINE MIR -60 148 23 448 291 108 19 chr4 25052038 25052196 -159236466 - MER5B DNA MER1_type -6 172 1 188 377 132 18 chr4 25052200 25052314 -159236348 + L2 LINE L2 2918 3044 -228 253 191 79 0 chr4 25052636 25052699 -159235963 + L1ME3A LINE L1 5594 5661 -501 297 300 0 0 chr4 25052702 25052792 -159235870 - Tigger5 DNA MER2_type -1 2322 2233 236 230 14 27 chr4 25052841 25052915 -159235747 - Tigger5 DNA MER2_type 0 2323 2251 1185 272 60 14 chr4 25052941 25053244 -159235418 + L1ME3A LINE L1 5660 5995 -175 1958 84 0 4 chr4 25053244 25053505 -159235157 + AluY SINE Alu 50 309 -2 1185 272 60 14 chr4 25053505 25053687 -159234975 + L1ME3A LINE L1 5995 6167 -3 26 30 0 0 chr4 25053948 25053981 -159234681 + AT_rich Low_complexity Low_complexity 1 33 0 271 260 30 0 chr4 25054331 25054431 -159234231 - MER94 DNA DNA -30 104 2 1858 123 40 53 chr4 25054594 25054896 -159233766 + AluSx SINE Alu 1 298 -14 2148 177 30 19 chr4 25055984 25056413 -159232249 + Tigger2a DNA MER2_type 1 434 0 498 325 37 0 chr4 25057613 25057801 -159230861 + MIR SINE MIR 28 222 -40 1853 131 0 11 chr4 25059489 25059749 -159228913 - AluSx SINE Alu -22 290 34 1991 203 49 14 chr4 25060181 25060669 -159227993 + MLT1D LTR MaLR 1 505 0 901 309 89 8 chr4 25061059 25061454 -159227208 + LTR16A LTR ERVL 24 450 0 677 309 19 9 chr4 25061761 25061995 -159226667 + MIR SINE MIR 17 252 -10 972 196 19 5 chr4 25062595 25062809 -159225853 - Tigger1 DNA MER2_type 0 2418 2202 817 156 0 7 chr4 25062798 25062933 -159225729 - Tigger1 DNA MER2_type -2261 157 24 * 2329 73 0 13 chr4 25063492 25063793 -159224869 + AluSg SINE Alu 13 309 -1 249 293 40 10 chr4 25064700 25064799 -159223863 + MLT2C1 LTR ERVL 44 145 -252 * 1918 218 72 29 chr4 25064741 25065265 -159223397 + MLT1E2 LTR MaLR 80 626 0 910 203 75 55 chr4 25065274 25065316 -159223346 + LTR37A LTR ERV1 19 59 -367 2253 96 0 23 chr4 25065316 25065618 -159223044 - AluSg1 SINE Alu -14 295 1 910 203 75 55 chr4 25065618 25065975 -159222687 + LTR37A LTR ERV1 59 426 0 404 250 74 7 chr4 25066527 25066675 -159221987 - MER69 DNA AcHobo 0 2526 2369 274 310 113 21 chr4 25066965 25067107 -159221555 - MER5A DNA MER1_type -34 155 1 2477 53 3 0 chr4 25067727 25068026 -159220636 + AluY SINE Alu 1 300 -11 296 216 21 31 chr4 25068520 25068617 -159220045 + (TATATG)n Simple_repeat Simple_repeat 3 98 0 733 249 141 42 chr4 25068634 25069060 -159219602 + LTR33 LTR ERVL 46 513 -8 2388 109 0 0 chr4 25069267 25069579 -159219083 + AluSq SINE Alu 1 312 -1 37 0 0 0 chr4 25070148 25070185 -159218477 + AT_rich Low_complexity Low_complexity 1 37 0 2399 74 0 0 chr4 25071867 25072165 -159216497 + AluY SINE Alu 1 298 -13 1131 252 41 21 chr4 25072610 25072900 -159215762 + MLT1F LTR MaLR 8 303 -239 439 250 129 0 chr4 25072903 25073027 -159215635 - MIR SINE MIR -121 141 2 22 0 0 0 chr4 25074614 25074636 -159214026 + AT_rich Low_complexity Low_complexity 1 22 0 1426 192 17 10 chr4 25075130 25075422 -159213240 + L1MB8 LINE L1 5613 5906 -278 8396 162 21 12 chr4 25075435 25076874 -159211788 + Tigger1 DNA MER2_type 14 1466 -952 5925 90 18 8 chr4 25076875 25077709 -159210953 + L1PA11 LINE L1 5333 6174 0 5008 139 43 31 chr4 25077711 25078335 -159210327 + Tigger1 DNA MER2_type 1465 2105 -313 2049 146 0 7 chr4 25078335 25078644 -159210018 + AluSx SINE Alu 1 307 -5 5008 139 43 31 chr4 25078644 25078950 -159209712 + Tigger1 DNA MER2_type 2105 2406 -12 2003 150 31 3 chr4 25079043 25079397 -159209265 - L1PB4 LINE L1 -9 6147 5784 214 291 12 12 chr4 25079402 25079488 -159209174 + (TA)n Simple_repeat Simple_repeat 1 86 0 619 77 121 0 chr4 25079489 25079580 -159209082 - L1PB4 LINE L1 -374 5782 5681 667 232 133 4 chr4 25079586 25079819 -159208843 + L1MB8 LINE L1 5915 6177 -1 214 260 0 0 chr4 25080326 25080376 -159208286 + L2 LINE L2 3264 3313 0 286 291 126 50 chr4 25080449 25080631 -159208031 - L2 LINE L2 -899 2415 2220 318 324 44 28 chr4 25081188 25081370 -159207292 + MIR SINE MIR 21 205 -57 321 45 101 0 chr4 25081371 25081460 -159207202 + (TA)n Simple_repeat Simple_repeat 2 99 0 24 77 0 0 chr4 25081515 25081567 -159207095 + AT_rich Low_complexity Low_complexity 1 52 0 200 83 0 28 chr4 25081638 25081674 -159206988 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 19462 46 5 5 chr4 25081674 25084924 -159203738 - L1PA3 LINE L1 -24 6131 2883 5124 200 14 38 chr4 25085024 25086583 -159202079 + L1MC1 LINE L1 4818 6333 0 188 35 35 0 chr4 25086987 25087016 -159201646 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 959 191 6 6 chr4 25087205 25087383 -159201279 + MLT1A2 LTR MaLR 1 178 -196 437 309 76 16 chr4 25088860 25089097 -159199565 + MIR SINE MIR 5 248 -14 1521 130 165 29 chr4 25089319 25089634 -159199028 + THE1C LTR MaLR 1 358 -17 245 62 0 0 chr4 25091321 25091353 -159197309 + MLT1J1 LTR MaLR 407 438 -8 2177 183 5 8 chr4 25092169 25092557 -159196105 + MLT1B LTR MaLR 4 390 0 205 325 89 16 chr4 25092576 25092699 -159195963 - L2 LINE L2 0 3272 3141 1590 177 115 65 chr4 25092770 25092928 -159195734 + MLT1C LTR MaLR 2 151 -316 1651 208 77 61 chr4 25092928 25092971 -159195691 - MLT2B1 LTR ERVL 0 520 479 306 73 0 0 chr4 25092971 25093012 -159195650 + (TG)n Simple_repeat Simple_repeat 2 42 0 1651 208 77 61 chr4 25093012 25093478 -159195184 - MLT2B1 LTR ERVL -41 479 3 1590 177 115 65 chr4 25093478 25093753 -159194909 + MLT1C LTR MaLR 151 457 -10 26 30 0 0 chr4 25094324 25094357 -159194305 + AT_rich Low_complexity Low_complexity 1 33 0 382 378 40 12 chr4 25094886 25095135 -159193527 + MIR SINE MIR 1 256 -6 360 0 0 0 chr4 25096183 25096223 -159192439 + (TA)n Simple_repeat Simple_repeat 1 40 0 207 0 0 0 chr4 25096520 25096543 -159192119 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 282 342 45 0 chr4 25096632 25096743 -159191919 - L3 LINE CR1 -172 1405 1290 7391 169 9 57 chr4 25096743 25098249 -159190413 + L1M1 LINE L1 10 1786 -5779 28 61 0 0 chr4 25098420 25098469 -159190193 + AT_rich Low_complexity Low_complexity 1 49 0 272 291 0 47 chr4 25098559 25098645 -159190017 - L3 LINE CR1 -486 1091 1010 602 346 134 17 chr4 25098648 25099334 -159189328 + L2 LINE L2 2552 3313 0 573 256 68 31 chr4 25099382 25099573 -159189089 + MIR SINE MIR 18 215 -47 464 301 68 41 chr4 25099625 25099844 -159188818 - L3 LINE CR1 -608 969 745 3141 234 114 24 chr4 25100188 25101121 -159187541 - L1MD2 LINE L1 -14 6345 5498 2451 87 0 0 chr4 25101121 25101431 -159187231 - AluY SINE Alu -1 310 1 3141 234 114 24 chr4 25101431 25102083 -159186579 - L1MD2 LINE L1 -861 5498 4600 30857 47 4 3 chr4 25102104 25106741 -159181921 - L1PA5 LINE L1 -5 6149 1506 1769 158 16 26 chr4 25107297 25107601 -159181061 + AluSx SINE Alu 1 301 -11 30 0 0 0 chr4 25107601 25107631 -159181031 + AT_rich Low_complexity Low_complexity 1 30 0 452 320 41 12 chr4 25107996 25108168 -159180494 + MIR SINE MIR 37 213 -49 22 70 0 0 chr4 25108230 25108273 -159180389 + AT_rich Low_complexity Low_complexity 1 43 0 1244 214 50 36 chr4 25108739 25109099 -159179563 - MLT1A1 LTR MaLR 0 365 1 2017 196 35 51 chr4 25110034 25110543 -159178119 + MLT1D LTR MaLR 5 505 0 569 278 100 39 chr4 25110585 25110815 -159177847 + MIR SINE MIR 19 262 0 211 357 24 0 chr4 25111175 25111259 -159177403 + L2 LINE L2 3219 3304 -9 21 0 0 0 chr4 25112120 25112141 -159176521 + AT_rich Low_complexity Low_complexity 1 21 0 423 0 0 0 chr4 25113323 25113370 -159175292 + (TCTA)n Simple_repeat Simple_repeat 1 47 0 226 194 32 0 chr4 25113675 25113737 -159174925 + CT-rich Low_complexity Low_complexity 1 64 0 841 261 101 62 chr4 25113763 25114249 -159174413 + MLT1D LTR MaLR 1 505 0 1348 212 36 39 chr4 25115497 25115860 -159172802 + MLT1A1 LTR MaLR 4 365 0 393 251 86 69 chr4 25116067 25116242 -159172420 - LTR16C LTR ERVL -4 487 310 23 0 0 0 chr4 25116867 25116890 -159171772 + AT_rich Low_complexity Low_complexity 1 23 0 368 261 8 0 chr4 25117299 25117418 -159171244 + CT-rich Low_complexity Low_complexity 1 120 0 2039 120 20 10 chr4 25117418 25117583 -159171079 - AluSx SINE Alu -8 304 142 405 0 0 0 chr4 25117583 25117628 -159171034 + (TG)n Simple_repeat Simple_repeat 2 46 0 1778 145 0 4 chr4 25117628 25117890 -159170772 - AluY SINE Alu -27 284 24 2039 120 20 10 chr4 25117890 25118024 -159170638 - AluSx SINE Alu -169 143 1 257 327 173 30 chr4 25118071 25118505 -159170157 + L2 LINE L2 1804 2299 -1015 248 333 56 61 chr4 25119025 25119205 -159169457 - L2 LINE L2 -227 3045 2867 825 275 28 73 chr4 25120951 25120992 -159167670 + L2 LINE L2 1430 1471 -1843 1179 210 59 65 chr4 25120992 25121364 -159167298 - MLT1A2 LTR MaLR -3 371 2 825 275 28 73 chr4 25121364 25121619 -159167043 + L2 LINE L2 1471 1704 -1610 2206 125 0 0 chr4 25121619 25121923 -159166739 + AluSx SINE Alu 1 304 -8 825 275 28 73 chr4 25121923 25122047 -159166615 + L2 LINE L2 1704 1832 -1482 1180 259 83 76 chr4 25122173 25122294 -159166368 - L1MC4a LINE L1 -1861 5947 5828 1820 128 55 43 chr4 25122294 25122623 -159166039 + MER1B DNA MER1_type 4 336 -1 1180 259 83 76 chr4 25122623 25123116 -159165546 - L1MC4a LINE L1 -1980 5828 5325 474 120 0 0 chr4 25123116 25123191 -159165471 + (TA)n Simple_repeat Simple_repeat 1 75 0 1180 259 83 76 chr4 25123191 25123263 -159165399 - L1MC4a LINE L1 -2483 5325 5255 316 342 26 8 chr4 25123730 25123847 -159164815 + L2 LINE L2 1823 1941 -1373 630 183 0 0 chr4 25123853 25123984 -159164678 + L1MA4 LINE L1 6169 6299 -1 482 281 32 86 chr4 25124309 25124530 -159164132 + MLT1J LTR MaLR 105 313 -198 457 285 55 10 chr4 25124557 25124757 -159163905 - MER58C DNA MER1_type 0 215 7 * 603 239 64 21 chr4 25124756 25124944 -159163718 + MLT1J LTR MaLR 314 509 -2 349 310 155 35 chr4 25125899 25126209 -159162453 + MLT1J2 LTR MaLR 60 406 -44 289 313 160 15 chr4 25126242 25126373 -159162289 - MIR SINE MIR -100 162 13 223 337 142 30 chr4 25126650 25126819 -159161843 + MIR SINE MIR 1 188 -74 296 248 38 57 chr4 25126868 25126973 -159161689 - L2 LINE L2 -1 3312 3210 644 273 6 16 chr4 25127044 25127227 -159161435 + L1ME2 LINE L1 37 217 -6179 3222 266 63 15 chr4 25127231 25128596 -159160066 + L1ME2 LINE L1 2958 4387 -1828 24 32 0 0 chr4 25128604 25128635 -159160027 + AT_rich Low_complexity Low_complexity 1 31 0 1045 232 62 36 chr4 25128637 25129025 -159159637 + L1ME2 LINE L1 4590 4987 -1228 43205 28 21 1 chr4 25129039 25135070 -159153592 + L1HS LINE L1 1 6155 0 234 0 0 0 chr4 25135098 25135124 -159153538 + (A)n Simple_repeat Simple_repeat 1 26 0 2361 232 80 36 chr4 25135126 25135417 -159153245 + L1ME2 LINE L1 4978 5255 -978 1348 204 18 87 chr4 25135417 25135809 -159152853 + MLT1A1 LTR MaLR 1 365 0 2361 232 80 36 chr4 25135809 25136305 -159152357 + L1ME2 LINE L1 5255 5728 -505 2411 93 0 0 chr4 25136305 25136616 -159152046 + AluSx SINE Alu 1 311 -1 2361 232 80 36 chr4 25136616 25137017 -159151645 + L1ME2 LINE L1 5728 6232 -1 31 0 0 0 chr4 25137320 25137351 -159151311 + AT_rich Low_complexity Low_complexity 1 31 0 1571 156 33 11 chr4 25138827 25139102 -159149560 - AluJo SINE Alu -29 283 3 405 0 0 0 chr4 25139310 25139355 -159149307 + (TG)n Simple_repeat Simple_repeat 2 46 0 372 289 152 19 chr4 25141267 25141478 -159147184 + MIR SINE MIR 18 256 -6 384 332 70 54 chr4 25141625 25141673 -159146989 - MIR SINE MIR -6 256 210 2102 109 0 14 chr4 25141673 25141981 -159146681 - AluSx SINE Alu 0 304 1 384 332 70 54 chr4 25141981 25142172 -159146490 - MIR SINE MIR -52 210 12 259 299 72 31 chr4 25142174 25142271 -159146391 + L2 LINE L2 3175 3275 -38 353 307 61 42 chr4 25142456 25142668 -159145994 - LTR67 LTR ERVL -4 553 338 476 309 24 58 chr4 25142738 25142945 -159145717 - LTR67 LTR ERVL -356 201 2 245 269 87 39 chr4 25142952 25143056 -159145606 - MIR SINE MIR -119 143 35 477 283 57 28 chr4 25143189 25143366 -159145296 - MIR3 SINE MIR -6 202 21 423 313 41 7 chr4 25143932 25144079 -159144583 + MIR SINE MIR 3 154 -108 2175 104 16 23 chr4 25144267 25144575 -159144087 + AluSx SINE Alu 1 306 -6 180 250 80 40 chr4 25144584 25144684 -159143978 - MIR SINE MIR -61 201 98 1185 208 128 17 chr4 25144686 25144974 -159143688 + MER67D LTR ERV1 1 320 -194 347 198 42 104 chr4 25144976 25145072 -159143590 - Tigger7 DNA MER2_type 0 2487 2398 2528 170 114 0 chr4 25145074 25145539 -159143123 - Tigger7 DNA MER2_type -1966 521 4 651 224 55 16 chr4 25145546 25145729 -159142933 + MER67D LTR ERV1 325 514 0 225 233 0 0 chr4 25145892 25145935 -159142727 + MIR3 SINE MIR 118 160 -48 23 0 0 0 chr4 25146038 25146061 -159142601 + AT_rich Low_complexity Low_complexity 1 23 0 1788 156 7 16 chr4 25146162 25146470 -159142192 - AluSq SINE Alu -8 305 1 184 341 89 32 chr4 25146760 25146883 -159141779 - L2 LINE L2 -2 3311 3182 1640 154 57 11 chr4 25147194 25147320 -159141342 + AluSx SINE Alu 1 120 -192 220 0 86 0 chr4 25147320 25147355 -159141307 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1640 154 57 11 chr4 25147355 25147507 -159141155 + AluSx SINE Alu 120 292 -20 180 0 0 0 chr4 25147508 25147528 -159141134 + (TA)n Simple_repeat Simple_repeat 1 20 0 1710 170 20 3 chr4 25148465 25148765 -159139897 - AluJb SINE Alu -6 306 2 275 294 56 0 chr4 25149027 25149153 -159139509 + L1ME LINE L1 5651 5783 -338 370 213 7 26 chr4 25150305 25150460 -159138202 + (TA)n Simple_repeat Simple_repeat 1 152 0 201 292 11 101 chr4 25150753 25150842 -159137820 - L2 LINE L2 -182 3090 3010 234 105 0 0 chr4 25151146 25151184 -159137478 + (TCCA)n Simple_repeat Simple_repeat 1 38 0 329 75 19 0 chr4 25152069 25152122 -159136540 + (TTTCC)n Simple_repeat Simple_repeat 4 57 0 1224 148 0 37 chr4 25152128 25152344 -159136318 - L1PB4 LINE L1 -13 6143 5936 3062 163 57 39 chr4 25152393 25153109 -159135553 - L1MA8 LINE L1 -4 6287 5559 564 134 10 0 chr4 25153113 25153210 -159135452 - AluSg/x SINE Alu -2 310 213 829 134 22 8 chr4 25153210 25153344 -159135318 - L1MA8 LINE L1 -743 5569 5434 592 304 51 82 chr4 25153344 25153699 -159134963 + L2 LINE L2 2852 3190 -123 1016 208 47 24 chr4 25153699 25153954 -159134708 + MIR SINE MIR 2 262 0 592 304 51 82 chr4 25153954 25154072 -159134590 + L2 LINE L2 3190 3310 -3 614 233 0 6 chr4 25154998 25155174 -159133488 + CT-rich Low_complexity Low_complexity 3 177 0 213 220 0 20 chr4 25155219 25155269 -159133393 + MIR SINE MIR 116 164 -98 1625 174 34 17 chr4 25156295 25156589 -159132073 - AluJb SINE Alu -13 299 1 421 294 42 17 chr4 25157504 25157623 -159131039 + MIR SINE MIR 23 144 -118 21 0 0 0 chr4 25158113 25158134 -159130528 + AT_rich Low_complexity Low_complexity 1 21 0 363 330 40 28 chr4 25158393 25158569 -159130093 + L2 LINE L2 3122 3299 -14 453 331 50 25 chr4 25158586 25158828 -159129834 + MIR SINE MIR 14 261 -1 228 297 0 16 chr4 25160179 25160243 -159128419 - L2 LINE L2 -26 3246 3184 22 56 0 0 chr4 25162387 25162423 -159126239 + AT_rich Low_complexity Low_complexity 1 36 0 1464 146 13 86 chr4 25162438 25162565 -159126097 + AluJo SINE Alu 16 151 -161 351 0 0 0 chr4 25162565 25162604 -159126058 + (CTA)n Simple_repeat Simple_repeat 1 39 0 1464 146 13 86 chr4 25162604 25162778 -159125884 + AluJo SINE Alu 151 295 -17 2553 43 7 0 chr4 25163221 25163520 -159125142 - AluY SINE Alu -10 301 1 221 200 36 0 chr4 25164047 25164102 -159124560 + (TGAA)n Simple_repeat Simple_repeat 4 60 0 781 331 64 10 chr4 25164234 25164548 -159124114 + MLT1J1 LTR MaLR 96 426 -20 25 31 0 0 chr4 25165313 25165345 -159123317 + AT_rich Low_complexity Low_complexity 1 32 0 644 294 13 0 chr4 25166192 25166345 -159122317 + MER45A DNA AcHobo 1 155 -23 1500 225 115 27 chr4 25166453 25166974 -159121688 - L1ME3 LINE L1 -7 6155 5589 251 272 9 88 chr4 25168084 25168198 -159120464 - MIR SINE MIR -17 245 141 3203 52 13 0 chr4 25168720 25169358 -159119304 - L1PA5 LINE L1 -497 5657 5015 3029 44 0 0 chr4 25169358 25169719 -159118943 + L1PA5 LINE L1 5659 6019 -135 353 94 250 0 chr4 25169819 25169883 -159118779 + L1P5 LINE L1 5703 5782 -372 233 125 0 0 chr4 25169881 25169921 -159118741 + L1MC4 LINE L1 6664 6703 -1339 * 322 229 72 0 chr4 25169924 25170007 -159118655 + L1MC4 LINE L1 6615 6703 -1339 304 276 0 61 chr4 25169929 25170027 -159118635 - L1MC4 LINE L1 -1339 6703 6612 * 2311 113 14 11 chr4 25170028 25170399 -159118263 + L1PB3 LINE L1 5783 6154 0 25 0 0 0 chr4 25170399 25170424 -159118238 + AT_rich Low_complexity Low_complexity 1 25 0 383 247 2 6 chr4 25170526 25170630 -159118032 - MIR SINE MIR -41 167 65 2277 102 0 7 chr4 25171095 25171398 -159117264 - AluY SINE Alu -10 301 1 233 319 65 68 chr4 25171455 25171587 -159117075 - MIR SINE MIR -3 259 127 3563 150 64 0 chr4 25171587 25172199 -159116463 + L1PA16 LINE L1 5512 6162 -4 233 319 65 68 chr4 25172199 25172314 -159116348 - MIR SINE MIR -135 127 13 1046 343 47 15 chr4 25172504 25172909 -159115753 - MER115 DNA AcHobo -238 455 38 322 327 44 0 chr4 25173840 25173953 -159114709 + MIR SINE MIR 30 147 -61 242 158 0 0 chr4 25174389 25174427 -159114235 - L2 LINE L2 0 3272 3235 338 354 35 7 chr4 25175024 25175168 -159113494 - MIR SINE MIR -44 218 71 819 223 25 30 chr4 25175218 25175420 -159113242 - MIR SINE MIR -52 210 10 427 314 25 16 chr4 25176145 25176266 -159112396 + MIR3 SINE MIR 12 133 -75 605 285 15 35 chr4 25176309 25176509 -159112153 - MIR SINE MIR -64 198 3 257 278 78 0 chr4 25176947 25177062 -159111600 + L1ME4a LINE L1 5982 6105 -16 1843 174 3 0 chr4 25177430 25177741 -159110921 - AluJb SINE Alu 0 312 1 1991 129 23 54 chr4 25178316 25178703 -159109959 - THE1C LTR MaLR 0 375 1 2563 96 67 7 chr4 25178726 25179144 -159109518 - L1MA5A LINE L1 -4 6293 5851 377 39 0 19 chr4 25179197 25179249 -159109413 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 256 311 15 61 chr4 25179257 25179389 -159109273 + L2 LINE L2 3180 3305 -8 22 70 0 0 chr4 25180526 25180569 -159108093 + AT_rich Low_complexity Low_complexity 1 43 0 1851 146 42 39 chr4 25180897 25181232 -159107430 + MER1B DNA MER1_type 2 337 0 562 295 112 9 chr4 25181281 25181505 -159107157 - MIR SINE MIR -14 248 2 201 227 80 45 chr4 25181877 25181965 -159106697 - MIR SINE MIR -75 187 97 1677 184 45 14 chr4 25182116 25182470 -159106192 - MLT1A1 LTR MaLR 0 365 1 704 229 32 0 chr4 25182482 25182639 -159106023 + MER106B DNA MER1_type 896 1057 -2 213 65 0 0 chr4 25182857 25182888 -159105774 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2218 111 0 0 chr4 25182912 25183201 -159105461 - AluSx SINE Alu -23 289 1 430 203 0 0 chr4 25183225 25183304 -159105358 - AluJ/FLAM SINE Alu -233 79 1 436 327 103 14 chr4 25183554 25183768 -159104894 + MIR SINE MIR 23 255 -7 1494 156 101 0 chr4 25185411 25185690 -159102972 - AluJo SINE Alu 0 305 1 432 370 22 6 chr4 25186073 25186254 -159102408 - MIR SINE MIR -29 233 50 583 294 71 5 chr4 25186594 25186791 -159101871 - MIR SINE MIR 0 262 53 206 286 0 0 chr4 25186813 25186869 -159101793 + MIR SINE MIR 192 247 -15 2205 101 3 0 chr4 25187587 25187914 -159100748 - AluSq SINE Alu 0 328 1 226 320 10 48 chr4 25188024 25188127 -159100535 + L2 LINE L2 3174 3272 0 34 72 0 0 chr4 25188578 25188647 -159100015 + AT_rich Low_complexity Low_complexity 1 69 0 309 315 51 115 chr4 25189894 25189988 -159098674 + MLT1K LTR MaLR 197 295 -293 1350 55 0 0 chr4 25189988 25190182 -159098480 + L1PA5 LINE L1 5972 6165 0 309 315 51 115 chr4 25190182 25190496 -159098166 + MLT1K LTR MaLR 295 580 -8 253 282 50 138 chr4 25190693 25190874 -159097788 + L2 LINE L2 3077 3241 -31 2296 129 8 19 chr4 25190906 25191285 -159097377 - THE1C LTR MaLR 0 375 1 214 279 0 16 chr4 25192517 25192578 -159096084 + MIR SINE MIR 2 61 -201 2161 204 56 31 chr4 25192586 25193071 -159095591 + MLT1D LTR MaLR 7 503 -2 533 296 57 0 chr4 25193098 25193257 -159095405 + MIR SINE MIR 95 262 0 183 42 0 0 chr4 25193379 25193403 -159095259 + (TG)n Simple_repeat Simple_repeat 2 25 0 1367 217 43 45 chr4 25193749 25194123 -159094539 - MLT1A2 LTR MaLR -1 373 1 1759 188 3 0 chr4 25194178 25194486 -159094176 - AluSq SINE Alu -4 309 1 1286 201 0 0 chr4 25194537 25194776 -159093886 + Tigger5 DNA MER2_type 2085 2323 0 1829 113 0 0 chr4 25194920 25195159 -159093503 - AluSx SINE Alu -73 239 1 1478 167 0 0 chr4 25195210 25195449 -159093213 + Tigger5 DNA MER2_type 2085 2323 0 333 246 0 0 chr4 25195772 25195841 -159092821 - MER94 DNA DNA -61 73 5 244 310 60 0 chr4 25196147 25196247 -159092415 - L3 LINE CR1 -2 1575 1470 297 352 16 0 chr4 25196260 25196385 -159092277 - MIR SINE MIR -16 246 120 327 219 0 0 chr4 25196436 25196509 -159092153 + FLAM_C SINE Alu 35 107 -26 419 168 13 47 chr4 25196509 25196658 -159092004 + GA-rich Low_complexity Low_complexity 1 144 0 323 295 47 31 chr4 25197112 25197241 -159091421 + MIR3 SINE MIR 75 205 -3 216 0 0 0 chr4 25197943 25197967 -159090695 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 274 292 44 44 chr4 25198009 25198122 -159090540 - L2 LINE L2 -18 3295 3183 416 241 26 25 chr4 25198172 25198384 -159090278 - MER5C DNA MER1_type 0 324 34 2103 136 128 8 chr4 25198385 25198767 -159089895 + MSTA LTR MaLR 1 428 0 1370 209 53 76 chr4 25200218 25200615 -159088047 + MLT1C LTR MaLR 6 392 -75 4443 78 15 29 chr4 25200615 25201273 -159087389 - L1PA10 LINE L1 -3 6165 5517 1370 209 53 76 chr4 25201273 25201348 -159087314 + MLT1C LTR MaLR 392 467 0 201 290 16 16 chr4 25202828 25202890 -159085772 - L2 LINE L2 -4 3309 3248 236 336 41 16 chr4 25203206 25203328 -159085334 - L2 LINE L2 -252 3061 2937 355 298 8 8 chr4 25203437 25203558 -159085104 - L2 LINE L2 -1357 1957 1837 186 44 44 44 chr4 25204068 25204113 -159084549 + (TATAA)n Simple_repeat Simple_repeat 5 49 0 315 112 112 0 chr4 25204177 25204338 -159084324 + (TA)n Simple_repeat Simple_repeat 2 180 0 453 92 113 0 chr4 25204358 25204645 -159084017 + (TA)n Simple_repeat Simple_repeat 1 319 0 335 108 105 6 chr4 25204663 25204938 -159083724 + (TA)n Simple_repeat Simple_repeat 1 302 0 1911 139 0 0 chr4 25204954 25205220 -159083442 - AluSx SINE Alu -46 266 1 351 173 0 0 chr4 25205224 25205305 -159083357 - Charlie4 DNA MER1_type -79 1882 1802 756 200 28 17 chr4 25205398 25205578 -159083084 - Charlie4 DNA MER1_type -1779 182 1 1079 291 96 20 chr4 25205595 25206055 -159082607 + L2 LINE L2 2810 3304 -9 879 149 0 8 chr4 25206286 25206420 -159082242 + AluJb SINE Alu 2 134 -178 1928 99 44 41 chr4 25207000 25207294 -159081368 + AluSg1 SINE Alu 1 295 -14 454 301 48 15 chr4 25207448 25207654 -159081008 - L2 LINE L2 0 3313 3101 17783 28 2 1 chr4 25207764 25210658 -159078004 + L1PA4 LINE L1 3251 6152 -3 397 294 15 77 chr4 25211114 25211451 -159077211 + L1ME4a LINE L1 5598 5913 -208 2464 68 3 3 chr4 25212155 25212462 -159076200 + AluY SINE Alu 1 307 -4 338 315 18 48 chr4 25212626 25212697 -159075965 + MIR SINE MIR 87 159 -103 1908 212 85 8 chr4 25212697 25213141 -159075521 + MLT2B1 LTR ERVL 3 488 -32 387 41 0 0 chr4 25213141 25213190 -159075472 + (TG)n Simple_repeat Simple_repeat 2 50 0 1908 212 85 8 chr4 25213190 25213226 -159075436 + MLT2B1 LTR ERVL 488 520 0 338 315 18 48 chr4 25213226 25213319 -159075343 + MIR SINE MIR 159 246 -16 180 351 26 0 chr4 25213787 25213864 -159074798 - L3 LINE CR1 -2 1575 1497 530 156 37 44 chr4 25214396 25214531 -159074131 - L1MA5 LINE L1 -1 6299 6166 25 51 0 0 chr4 25215157 25215196 -159073466 + AT_rich Low_complexity Low_complexity 1 39 0 289 363 76 6 chr4 25215320 25215491 -159073171 + MIR SINE MIR 21 203 -59 189 244 110 37 chr4 25216914 25216996 -159071666 - MIR3 SINE MIR -21 187 100 324 292 124 9 chr4 25217394 25217507 -159071155 - MIR3 SINE MIR -15 193 68 616 153 0 12 chr4 25217815 25217978 -159070684 + (TA)n Simple_repeat Simple_repeat 2 162 0 225 0 0 0 chr4 25218008 25218033 -159070629 + (TA)n Simple_repeat Simple_repeat 2 26 0 189 0 0 0 chr4 25218073 25218094 -159070568 + (TA)n Simple_repeat Simple_repeat 1 21 0 303 305 0 11 chr4 25218118 25218213 -159070449 - L1MC4 LINE L1 -1335 6707 6614 300 230 0 14 chr4 25218184 25218258 -159070404 - L1MCa LINE L1 -4358 2068 1996 * 425 263 101 43 chr4 25218990 25219199 -159069463 - MIR SINE MIR -21 241 21 204 97 0 0 chr4 25219486 25219517 -159069145 + (CATA)n Simple_repeat Simple_repeat 2 32 0 234 314 29 0 chr4 25219806 25219876 -159068786 + MIR SINE MIR 172 243 -19 261 180 34 0 chr4 25221140 25221229 -159067433 + (TA)n Simple_repeat Simple_repeat 2 93 0 329 335 13 13 chr4 25221275 25221427 -159067235 + L1MC/D LINE L1 5665 5816 -1992 3182 32 3 0 chr4 25221913 25222292 -159066370 + L1PA3 LINE L1 5771 6150 -5 2310 82 0 13 chr4 25222397 25222702 -159065960 - AluSc SINE Alu -8 301 1 362 269 8 34 chr4 25223173 25223292 -159065370 + MIR SINE MIR 102 217 -45 187 297 0 0 chr4 25223915 25223952 -159064710 + MER5B DNA MER1_type 5 41 -137 1674 214 36 17 chr4 25224022 25224436 -159064226 + L1MB5 LINE L1 5688 6109 -65 369 259 14 72 chr4 25224654 25224793 -159063869 + MER5A DNA MER1_type 37 167 -22 249 310 128 37 chr4 25224887 25225074 -159063588 - MIR SINE MIR -12 250 47 208 348 17 17 chr4 25225848 25225963 -159062699 + MIR SINE MIR 73 187 -75 264 383 113 0 chr4 25225991 25226132 -159062530 - L2 LINE L2 -6 3266 3110 730 335 80 17 chr4 25226146 25226558 -159062104 - L2 LINE L2 0 3313 2876 1312 167 20 82 chr4 25226579 25226885 -159061777 + AluJo SINE Alu 12 298 -14 610 310 59 31 chr4 25226885 25227172 -159061490 - L2 LINE L2 -481 2833 2539 430 287 28 35 chr4 25227214 25227357 -159061305 + L2 LINE L2 3172 3313 0 475 320 114 0 chr4 25227386 25227561 -159061101 - L2 LINE L2 -856 2458 2264 647 264 10 70 chr4 25227624 25227739 -159060923 + MER5A DNA MER1_type 1 100 -89 2247 118 0 6 chr4 25227739 25228052 -159060610 + AluSx SINE Alu 2 312 0 647 264 10 70 chr4 25228052 25228137 -159060525 + MER5A DNA MER1_type 100 189 0 226 338 42 0 chr4 25228541 25228612 -159060050 + L2 LINE L2 3240 3313 0 523 310 91 13 chr4 25229205 25229437 -159059225 - MIR SINE MIR 0 262 13 262 397 63 0 chr4 25229865 25229991 -159058671 - L2 LINE L2 -17 3255 3122 324 0 0 0 chr4 25230158 25230194 -159058468 + (TG)n Simple_repeat Simple_repeat 1 36 0 454 331 0 7 chr4 25230905 25231059 -159057603 - MER117 DNA MER1_type -42 155 3 267 375 29 0 chr4 25231068 25231172 -159057490 - MIR3 SINE MIR -54 154 48 782 386 41 16 chr4 25231870 25232520 -159056142 + L2 LINE L2 2394 3051 -221 692 322 47 41 chr4 25232530 25232996 -159055666 + LTR16C LTR ERVL 3 471 -20 480 291 44 34 chr4 25233051 25233257 -159055405 + L2 LINE L2 3106 3313 0 582 297 53 23 chr4 25233463 25233696 -159054966 - MIR SINE MIR -18 244 5 1272 184 73 35 chr4 25233939 25234227 -159054435 - AluJo SINE Alu -13 299 1 216 0 0 0 chr4 25234241 25234265 -159054397 + (TG)n Simple_repeat Simple_repeat 2 25 0 194 313 50 38 chr4 25234296 25234376 -159054286 - MIR SINE MIR -173 89 9 518 207 96 106 chr4 25234745 25234953 -159053709 + MIR SINE MIR 43 248 -14 1914 148 0 3 chr4 25235088 25235410 -159053252 + AluSx SINE Alu 1 321 0 207 344 75 47 chr4 25235537 25235749 -159052913 - L2 LINE L2 -429 2885 2668 503 275 109 44 chr4 25236221 25236450 -159052212 - MIR SINE MIR -13 249 6 192 284 49 74 chr4 25236751 25236832 -159051830 + MIR SINE MIR 5 83 -179 224 379 29 44 chr4 25236851 25237057 -159051605 - L2 LINE L2 -252 3020 2818 344 269 84 8 chr4 25237219 25237338 -159051324 + MIR SINE MIR 87 214 -48 5872 29 0 0 chr4 25237644 25238339 -159050323 - L1P LINE L1 -2017 4129 3435 282 392 15 38 chr4 25239069 25239332 -159049330 - L2 LINE L2 -198 3074 2818 1783 158 37 10 chr4 25239667 25239964 -159048698 - AluJb SINE Alu -4 308 4 1943 154 3 0 chr4 25240979 25241277 -159047385 + AluSx SINE Alu 3 301 -11 748 276 86 0 chr4 25242363 25242595 -159046067 + MIR SINE MIR 11 262 0 541 277 14 7 chr4 25242628 25242769 -159045893 - MIR SINE MIR 0 262 121 188 305 34 51 chr4 25243631 25243749 -159044913 + L2 LINE L2 2350 2465 -849 253 336 90 52 chr4 25244150 25244284 -159044378 + L2 LINE L2 3134 3272 0 326 314 50 14 chr4 25245413 25245553 -159043109 - MIR3 SINE MIR -40 168 24 229 291 126 39 chr4 25245834 25245961 -159042701 - MIR SINE MIR -77 185 48 1398 133 31 9 chr4 25246124 25246349 -159042313 + MER30 DNA MER1_type 1 230 0 816 121 0 0 chr4 25246507 25246623 -159042039 + MLT1C LTR MaLR 346 461 -6 872 127 0 22 chr4 25246641 25246775 -159041887 - AluSq/x SINE Alu -179 133 3 439 261 50 50 chr4 25246902 25247082 -159041580 + MLT1J LTR MaLR 1 180 -331 1135 260 130 84 chr4 25247425 25248473 -159040189 + HAL1 LINE L1 679 1823 -684 2371 114 35 0 chr4 25248473 25248840 -159039822 - L1PA13 LINE L1 -2 6161 5782 1135 260 130 84 chr4 25248840 25249350 -159039312 + HAL1 LINE L1 1823 2308 -199 419 113 38 38 chr4 25249388 25249468 -159039194 + MADE1 DNA Mariner 1 80 0 316 197 0 53 chr4 25249733 25249809 -159038853 - L1MC4 LINE L1 -1317 6725 6654 35 0 0 0 chr4 25249850 25249885 -159038777 + AT_rich Low_complexity Low_complexity 1 35 0 251 261 148 11 chr4 25249887 25249975 -159038687 - L2 LINE L2 0 3313 3214 254 206 88 69 chr4 25250017 25250119 -159038543 + MIR SINE MIR 89 192 -70 342 309 148 9 chr4 25250706 25250916 -159037746 + L2 LINE L2 2561 2799 -515 2204 127 0 3 chr4 25251352 25251660 -159037002 - AluSx SINE Alu -5 307 1 453 235 196 36 chr4 25252416 25252722 -159035940 + MER113 DNA MER1_type? 3 357 -164 354 23 0 0 chr4 25252725 25252768 -159035894 + (TG)n Simple_repeat Simple_repeat 2 44 0 1309 244 71 25 chr4 25253179 25253618 -159035044 + L1MB7 LINE L1 5715 6173 -11 1249 45 0 0 chr4 25253922 25254097 -159034565 + L1PA4 LINE L1 5992 6166 0 2557 62 0 0 chr4 25254204 25254508 -159034154 + AluY SINE Alu 1 304 -7 483 291 128 45 chr4 25254733 25255007 -159033655 - LTR16A1 LTR ERVL 0 457 134 348 24 0 0 chr4 25255007 25255048 -159033614 + (TG)n Simple_repeat Simple_repeat 2 42 0 483 291 128 45 chr4 25255048 25255195 -159033467 - LTR16A1 LTR ERVL -323 134 1 211 354 13 13 chr4 25255202 25255281 -159033381 - MIR SINE MIR -166 96 18 26 0 0 0 chr4 25255368 25255394 -159033268 + AT_rich Low_complexity Low_complexity 1 26 0 1898 148 0 39 chr4 25255819 25256130 -159032532 + AluSx SINE Alu 1 299 -13 333 307 31 0 chr4 25257225 25257352 -159031310 + MER103 DNA DNA 33 163 -3 470 299 20 7 chr4 25257740 25257887 -159030775 - MIR SINE MIR -36 226 78 801 310 37 0 chr4 25258755 25258997 -159029665 - MIR SINE MIR 0 262 12 886 157 54 6 chr4 25259042 25259208 -159029454 - L1PA15 LINE L1 -198 5967 5794 1416 169 33 0 chr4 25259430 25259703 -159028959 - L1MA3 LINE L1 0 6305 6024 426 282 88 28 chr4 25261161 25261342 -159027320 - MIR SINE MIR -36 226 35 2218 69 3 21 chr4 25261840 25262223 -159026439 + AluY SINE Alu 1 378 0 519 337 78 24 chr4 25262792 25263124 -159025538 + L2 LINE L2 1203 1552 -1762 251 267 107 0 chr4 25263129 25263204 -159025458 + L2 LINE L2 3214 3296 -17 258 32 0 0 chr4 25263210 25263241 -159025421 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 365 329 28 35 chr4 25263524 25263667 -159024995 - MIR3 SINE MIR -65 143 2 419 244 10 129 chr4 25263965 25264166 -159024496 - MER69A DNA AcHobo 0 177 1 357 355 60 32 chr4 25264196 25264444 -159024218 + MIR SINE MIR 8 262 0 437 296 52 5 chr4 25264952 25265087 -159023575 + MIR3 SINE MIR 68 189 -19 645 293 107 34 chr4 25265680 25266182 -159022480 + L2 LINE L2 2738 3288 -25 288 0 0 0 chr4 25266191 25266223 -159022439 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 358 295 21 0 chr4 25266300 25266395 -159022267 + L2 LINE L2 3210 3306 -7 587 322 17 30 chr4 25266738 25266974 -159021688 - MIR SINE MIR -25 237 5 210 171 0 0 chr4 25267235 25267276 -159021386 + (TATG)n Simple_repeat Simple_repeat 2 42 0 195 100 0 0 chr4 25267298 25267328 -159021334 + (TG)n Simple_repeat Simple_repeat 2 31 0 210 71 0 0 chr4 25267368 25267396 -159021266 + (TA)n Simple_repeat Simple_repeat 2 29 0 283 260 110 0 chr4 25267835 25267908 -159020754 + MIR SINE MIR 64 144 -64 303 275 22 11 chr4 25268266 25268357 -159020305 + MIR SINE MIR 57 148 -114 493 299 38 13 chr4 25269238 25269395 -159019267 + MIR SINE MIR 35 195 -67 31 44 0 0 chr4 25269471 25269516 -159019146 + AT_rich Low_complexity Low_complexity 1 45 0 185 361 16 0 chr4 25269538 25269599 -159019063 - MIR SINE MIR -154 108 47 349 319 98 18 chr4 25271126 25271289 -159017373 - MIR3 SINE MIR -11 197 22 806 76 8 0 chr4 25274303 25274422 -159014240 + (GA)n Simple_repeat Simple_repeat 1 120 0 654 229 129 0 chr4 25275524 25275694 -159012968 + MIR SINE MIR 2 193 -69 320 324 190 0 chr4 25276324 25276503 -159012159 - MIR SINE MIR 0 262 50 862 204 0 0 chr4 25276667 25276814 -159011848 - AluJb SINE Alu -30 282 136 2190 107 3 7 chr4 25277094 25277393 -159011269 - AluSp SINE Alu -14 299 2 763 270 98 65 chr4 25277549 25277916 -159010746 + L2 LINE L2 2933 3311 -2 306 313 94 10 chr4 25278435 25278599 -159010063 + MIR SINE MIR 23 206 -56 187 348 0 14 chr4 25278701 25278770 -159009892 - MIR SINE MIR -115 147 80 273 29 0 0 chr4 25278978 25279012 -159009650 + (TG)n Simple_repeat Simple_repeat 2 35 0 452 164 77 0 chr4 25279653 25279757 -159008905 + L1MA2 LINE L1 6193 6304 0 471 314 100 9 chr4 25279819 25280029 -159008633 - MIR SINE MIR -1 261 33 1936 145 0 20 chr4 25280305 25280608 -159008054 - AluSx SINE Alu -15 297 1 2219 101 10 0 chr4 25280892 25281198 -159007464 - AluY SINE Alu 0 311 3 303 270 113 5 chr4 25281258 25281416 -159007246 + MIR SINE MIR 2 262 0 349 275 69 46 chr4 25281419 25281550 -159007112 - MIR SINE MIR -13 249 116 2222 94 0 0 chr4 25281700 25281977 -159006685 + AluSc SINE Alu 20 296 -13 422 277 38 22 chr4 25282547 25282731 -159005931 - MER5A DNA MER1_type -2 187 1 2265 220 77 58 chr4 25284129 25284765 -159003897 - MLT1E1 LTR MaLR -6 648 1 304 332 121 15 chr4 25285300 25285434 -159003228 + MIR SINE MIR 43 206 -56 2114 183 47 19 chr4 25285434 25285856 -159002806 + Tigger2a DNA MER2_type 1 434 0 304 332 121 15 chr4 25285856 25285920 -159002742 + MIR SINE MIR 206 262 0 207 400 11 0 chr4 25285934 25286024 -159002638 + L2 LINE L2 3169 3259 -13 347 377 43 56 chr4 25286310 25286615 -159002047 + L2 LINE L2 2970 3270 -2 2267 107 72 17 chr4 25287949 25288294 -159000368 + THE1B LTR MaLR 1 364 0 449 276 39 55 chr4 25290078 25290332 -158998330 - MER112 DNA MER1_type -3 253 4 268 267 17 0 chr4 25290835 25290895 -158997767 - MER96 DNA MER1_type? -24 151 91 2002 149 20 0 chr4 25290962 25291263 -158997399 + AluSx SINE Alu 1 307 -5 183 381 64 20 chr4 25291510 25291759 -158996903 + L3 LINE CR1 1065 1324 -253 273 194 11 21 chr4 25291908 25292001 -158996661 + GA-rich Low_complexity Low_complexity 4 95 0 886 178 7 7 chr4 25292018 25292457 -158996205 + GA-rich Low_complexity Low_complexity 1 439 0 258 32 0 0 chr4 25293418 25293449 -158995213 + (TA)n Simple_repeat Simple_repeat 2 32 0 5635 155 28 10 chr4 25293449 25295387 -158993275 - L1MA3 LINE L1 -41 7683 5709 14969 155 23 30 chr4 25295389 25299275 -158989387 - L1MA3 LINE L1 -2506 5059 1186 302 349 83 0 chr4 25299927 25300036 -158988626 - L2 LINE L2 -219 3053 2936 334 295 26 0 chr4 25301851 25301929 -158986733 - L2 LINE L2 -2 3270 3191 274 405 98 24 chr4 25301946 25302242 -158986420 + L2 LINE L2 2932 3249 -23 745 340 133 26 chr4 25302622 25303366 -158985296 + L2 LINE L2 2211 3032 -240 207 364 71 36 chr4 25303481 25303621 -158985041 + L2 LINE L2 3118 3262 -10 416 318 151 11 chr4 25304396 25304575 -158984087 + MIR SINE MIR 7 210 -52 1889 251 38 0 chr4 25304769 25305299 -158983363 - L1MB7 LINE L1 0 6184 5635 200 349 24 32 chr4 25305446 25305572 -158983090 + MIR3 SINE MIR 53 177 -31 318 335 45 13 chr4 25305901 25306056 -158982606 - MARNA DNA Mariner -40 546 387 451 303 42 48 chr4 25306355 25306811 -158981851 - L1ME3A LINE L1 -248 5922 5470 437 298 24 16 chr4 25306976 25307100 -158981562 + MIR3 SINE MIR 82 206 -2 269 250 0 0 chr4 25307354 25307418 -158981244 + GA-rich Low_complexity Low_complexity 6 69 0 379 312 122 34 chr4 25307506 25307833 -158980829 - MARNA DNA Mariner -221 365 10 231 357 10 31 chr4 25308018 25308116 -158980546 + MIR SINE MIR 12 107 -155 378 337 87 22 chr4 25308132 25308408 -158980254 - MLT1J LTR MaLR -8 503 210 1093 52 0 0 chr4 25308427 25308561 -158980101 + AluY SINE Alu 171 304 -7 1062 181 0 0 chr4 25308732 25308903 -158979759 + AluSg/x SINE Alu 135 305 -7 28 29 0 0 chr4 25308985 25309020 -158979642 + AT_rich Low_complexity Low_complexity 1 35 0 191 188 104 0 chr4 25310313 25310361 -158978301 - MIR SINE MIR -101 161 109 1090 241 101 19 chr4 25311215 25311592 -158977070 + MLT1C LTR MaLR 59 466 -1 231 279 156 34 chr4 25312654 25312833 -158975829 - MIR SINE MIR -42 220 20 239 343 139 7 chr4 25313903 25314040 -158974622 - MER5A DNA MER1_type 0 189 35 326 217 46 105 chr4 25314093 25314245 -158974417 - MIR SINE MIR -20 242 100 308 271 18 118 chr4 25314910 25315139 -158973523 - MIR SINE MIR -36 226 21 2080 195 131 37 chr4 25315232 25315750 -158972912 + MLT1F1 LTR MaLR 1 567 0 38 51 0 0 chr4 25316342 25316401 -158972261 + AT_rich Low_complexity Low_complexity 1 59 0 336 124 57 0 chr4 25316416 25316521 -158972141 + (TA)n Simple_repeat Simple_repeat 2 112 0 363 279 0 18 chr4 25317847 25317958 -158970704 - MLT1J LTR MaLR -458 109 1 269 288 13 115 chr4 25318051 25318277 -158970385 + MIR SINE MIR 21 223 -39 344 244 25 144 chr4 25319112 25319313 -158969349 + MER69A DNA AcHobo 1 177 0 379 324 28 35 chr4 25319611 25319756 -158968906 + MIR3 SINE MIR 2 145 -63 258 32 0 0 chr4 25320037 25320068 -158968594 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 217 326 11 34 chr4 25320157 25320246 -158968416 - L2 LINE L2 -1762 1552 1466 38 51 0 0 chr4 25320418 25320477 -158968185 + AT_rich Low_complexity Low_complexity 1 59 0 211 122 41 0 chr4 25320492 25320541 -158968121 + (TA)n Simple_repeat Simple_repeat 1 51 0 448 204 292 15 chr4 25320885 25321022 -158967640 - MER5A DNA MER1_type 0 189 15 26 0 0 0 chr4 25321196 25321222 -158967440 + AT_rich Low_complexity Low_complexity 1 26 0 253 315 33 22 chr4 25321232 25321324 -158967338 + MIR SINE MIR 8 100 -162 1103 280 113 25 chr4 25321334 25321805 -158966857 - LTR33A LTR ERVL -11 512 1 204 277 15 0 chr4 25321874 25321939 -158966723 + MIR SINE MIR 166 231 -31 457 339 96 21 chr4 25323270 25323509 -158965153 + MIR SINE MIR 6 262 0 22 35 0 0 chr4 25324316 25324345 -158964317 + AT_rich Low_complexity Low_complexity 1 29 0 1951 151 7 57 chr4 25325393 25325448 -158963214 + MLT1B LTR MaLR 1 57 -333 2267 131 28 11 chr4 25325448 25325806 -158962856 + THE1B LTR MaLR 1 364 0 1951 151 7 57 chr4 25325806 25326155 -158962507 + MLT1B LTR MaLR 57 385 -5 35784 89 6 10 chr4 25326547 25332720 -158955942 + L1PA6 LINE L1 11 6154 0 514 159 80 0 chr4 25332922 25333034 -158955628 + MLT2B2 LTR ERVL 1 121 -394 595 131 0 10 chr4 25333034 25333133 -158955529 + MER4A LTR ERV1 1 98 -566 1619 119 191 72 chr4 25333133 25333494 -158955168 + MER4A LTR ERV1 261 664 0 647 237 65 40 chr4 25333494 25333801 -158954861 + MLT2B2 LTR ERVL 117 474 -41 183 162 0 0 chr4 25334403 25334440 -158954222 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 22 35 0 0 chr4 25334690 25334719 -158953943 + AT_rich Low_complexity Low_complexity 1 29 0 273 57 0 0 chr4 25335410 25335445 -158953217 + (CAT)n Simple_repeat Simple_repeat 2 36 0 472 329 103 13 chr4 25335549 25335783 -158952879 + MIR SINE MIR 8 262 0 339 270 75 52 chr4 25336822 25336996 -158951666 + MIR SINE MIR 12 189 -73 1710 194 90 52 chr4 25387441 25387940 -158900722 - L1MB8 LINE L1 0 6178 5661 1655 191 20 7 chr4 25387943 25388236 -158900426 - AluJb SINE Alu -14 298 2 5668 58 1 3 chr4 25388261 25388983 -158899679 - L1PA5 LINE L1 -4 6150 5430 440 319 30 24 chr4 25389085 25389254 -158899408 - MIR SINE MIR -77 185 16 208 261 0 0 chr4 25390326 25390372 -158898290 - L2 LINE L2 -4 3309 3264 2031 125 31 0 chr4 25391260 25391609 -158897053 + AluSx SINE Alu 7 312 0 281 174 14 0 chr4 25392808 25392877 -158895785 + GA-rich Low_complexity Low_complexity 2 71 0 1353 193 37 84 chr4 25392920 25393303 -158895359 + MLT1A1 LTR MaLR 1 365 0 196 313 16 16 chr4 25394102 25394166 -158894496 + MIR3 SINE MIR 12 75 -133 189 0 0 0 chr4 25394289 25394310 -158894352 + (CA)n Simple_repeat Simple_repeat 2 22 0 711 324 36 8 chr4 25394471 25394721 -158893941 - MIR SINE MIR -3 259 3 414 196 0 0 chr4 25394966 25395063 -158893599 + (TCCA)n Simple_repeat Simple_repeat 2 98 0 442 339 109 9 chr4 25395074 25395304 -158893358 + MIR SINE MIR 8 260 -2 797 209 6 29 chr4 25395482 25395654 -158893008 + AluJb SINE Alu 121 288 -24 408 325 88 31 chr4 25395675 25395869 -158892793 - MIR SINE MIR -13 249 45 2354 71 0 19 chr4 25395870 25396178 -158892484 - AluY SINE Alu -9 302 1 851 238 20 139 chr4 25396355 25396843 -158891819 - L2 LINE L2 0 3313 2884 459 0 0 0 chr4 25396852 25396903 -158891759 + (TA)n Simple_repeat Simple_repeat 1 51 0 288 0 0 0 chr4 25396902 25396934 -158891728 + (CA)n Simple_repeat Simple_repeat 2 33 0 * 180 0 0 0 chr4 25396934 25396954 -158891708 + (TG)n Simple_repeat Simple_repeat 2 21 0 299 304 22 0 chr4 25396967 25397059 -158891603 - L2 LINE L2 -1670 1644 1551 222 317 83 41 chr4 25397145 25397290 -158891372 - L2 LINE L2 -469 2845 2695 460 326 102 14 chr4 25397491 25397706 -158890956 + MIR SINE MIR 29 262 0 480 93 0 0 chr4 25398403 25398478 -158890184 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 203 182 0 0 chr4 25398481 25398514 -158890148 + (TATATG)n Simple_repeat Simple_repeat 3 35 0 572 174 0 20 chr4 25399175 25399273 -158889389 + AluJo SINE Alu 87 182 -130 1946 131 7 4 chr4 25399373 25399648 -158889014 - AluSq SINE Alu -37 276 1 2057 136 27 38 chr4 25399828 25400196 -158888466 - THE1B LTR MaLR 0 364 1 505 256 33 60 chr4 25400959 25401174 -158887488 + MIR SINE MIR 41 249 -13 2394 66 3 7 chr4 25401207 25401510 -158887152 - AluY SINE Alu -9 302 1 190 295 26 51 chr4 25401931 25402009 -158886653 + L2 LINE L2 2746 2821 -493 286 389 11 32 chr4 25402045 25402230 -158886432 + L2 LINE L2 2873 3053 -219 940 255 62 0 chr4 25404878 25405121 -158883541 + L2 LINE L2 2509 2766 -548 184 277 0 21 chr4 25405704 25405751 -158882911 - MIR SINE MIR -99 163 118 462 114 0 0 chr4 25406074 25406144 -158882518 + (GA)n Simple_repeat Simple_repeat 1 70 0 180 0 0 0 chr4 25406483 25406503 -158882159 + (CA)n Simple_repeat Simple_repeat 2 21 0 524 331 77 15 chr4 25407748 25408020 -158880642 - L2 LINE L2 -337 2977 2689 260 177 210 0 chr4 25408472 25408534 -158880128 - L2 LINE L2 -4 3309 3235 2141 128 20 51 chr4 25408545 25408937 -158879725 + MLT1B LTR MaLR 11 390 0 741 297 72 70 chr4 25409309 25410051 -158878611 + L2 LINE L2 2576 3311 -2 400 350 47 43 chr4 25411062 25411319 -158877343 + MIR SINE MIR 5 262 0 219 308 82 27 chr4 25412178 25412324 -158876338 - L2 LINE L2 0 3313 3160 375 321 19 0 chr4 25413290 25413396 -158875266 + MER81 DNA DNA 6 113 -1 229 145 65 0 chr4 25413876 25413938 -158874724 + (TA)n Simple_repeat Simple_repeat 1 66 0 5781 60 0 2 chr4 25414137 25414938 -158873724 - L1P2 LINE L1 -708 5446 4647 1873 176 6 0 chr4 25414942 25415288 -158873374 - L1M4 LINE L1 -530 5654 5307 197 388 52 0 chr4 25415949 25416065 -158872597 - L2 LINE L2 -1 3271 3150 196 308 88 22 chr4 25416070 25416161 -158872501 + L2 LINE L2 3136 3232 -40 268 324 0 0 chr4 25418509 25418577 -158870085 + MLT1K LTR MaLR 144 211 -377 28 61 0 0 chr4 25419117 25419166 -158869496 + AT_rich Low_complexity Low_complexity 1 49 0 286 250 22 11 chr4 25419666 25419758 -158868904 + MER34 LTR ERV1 450 542 0 25 31 0 0 chr4 25419774 25419806 -158868856 + AT_rich Low_complexity Low_complexity 1 32 0 210 91 0 0 chr4 25419867 25419900 -158868762 + (CAT)n Simple_repeat Simple_repeat 3 35 0 314 281 0 20 chr4 25420150 25420303 -158868359 + (TA)n Simple_repeat Simple_repeat 1 150 0 217 195 0 0 chr4 25420356 25420397 -158868265 - MIR SINE MIR -96 166 126 2205 98 20 0 chr4 25420402 25420697 -158867965 + AluSx SINE Alu 1 301 -11 1275 246 93 12 chr4 25420791 25421124 -158867538 + MLT1D LTR MaLR 144 503 -2 1061 110 0 0 chr4 25421531 25421676 -158866986 + L1PA10 LINE L1 6009 6153 -15 25 31 0 0 chr4 25421755 25421787 -158866875 + AT_rich Low_complexity Low_complexity 1 32 0 189 315 14 14 chr4 25422761 25422834 -158865828 - MIR3 SINE MIR -15 193 121 778 296 106 48 chr4 25423001 25423522 -158865140 + MLT1K LTR MaLR 10 560 -28 415 113 0 0 chr4 25423535 25423597 -158865065 - MER53 DNA DNA 0 189 128 940 116 0 0 chr4 25423598 25423727 -158864935 - AluSg/x SINE Alu -15 297 169 721 102 22 15 chr4 25424406 25424543 -158864119 + (TTCTC)n Simple_repeat Simple_repeat 1 138 0 308 207 306 0 chr4 25424697 25424808 -158863854 - MIR3 SINE MIR -14 194 50 1862 108 4 0 chr4 25424823 25425072 -158863590 + AluSq SINE Alu 7 256 -57 872 310 182 23 chr4 25426775 25427433 -158861229 + L2 LINE L2 1413 2175 -1139 818 312 112 36 chr4 25427434 25427775 -158860887 + L2 LINE L2 2508 2822 -491 1435 193 2 98 chr4 25427775 25428174 -158860488 - MLT1A1 LTR MaLR -3 362 2 818 312 112 36 chr4 25428174 25428564 -158860098 + L2 LINE L2 2822 3309 -4 2365 146 29 43 chr4 25429042 25429534 -158859128 + MER31A LTR ERV1 1 485 0 187 374 12 0 chr4 25429749 25429832 -158858830 + MIR SINE MIR 178 261 -1 2307 106 3 0 chr4 25429969 25430280 -158858382 - AluSp SINE Alu -1 312 1 2472 229 72 15 chr4 25430551 25431222 -158857440 + Charlie1 DNA MER1_type 1496 2204 -557 753 337 106 18 chr4 25431249 25431685 -158856977 + L2 LINE L2 2840 3313 0 269 357 62 0 chr4 25431718 25431830 -158856832 - MIR SINE MIR -138 124 6 318 247 144 46 chr4 25431959 25432222 -158856440 - LTR37A LTR ERV1 -78 348 60 529 192 42 0 chr4 25433087 25433207 -158855455 + Charlie5 DNA MER1_type 4 128 -2484 476 225 74 48 chr4 25433210 25433238 -158855424 + Charlie5 DNA MER1_type 2243 2269 -355 1479 158 59 49 chr4 25433238 25433542 -158855120 - AluJo SINE Alu 0 312 6 476 225 74 48 chr4 25433542 25433784 -158854878 + Charlie5 DNA MER1_type 2269 2520 -104 184 231 0 0 chr4 25433795 25433834 -158854828 - L2 LINE L2 0 3272 3234 1777 263 62 8 chr4 25434397 25434933 -158853729 + MLT1F1 LTR MaLR 1 565 -2 1459 184 0 72 chr4 25435678 25435998 -158852664 + AluJb SINE Alu 1 297 -15 444 238 16 33 chr4 25437595 25437717 -158850945 + MLT1K LTR MaLR 453 572 -16 255 304 120 32 chr4 25437878 25438003 -158850659 + L2 LINE L2 3137 3272 0 644 307 139 12 chr4 25438248 25438580 -158850082 - L2 LINE L2 0 3313 2940 3265 172 24 74 chr4 25438580 25439087 -158849575 + L1MB1 LINE L1 5365 5819 -349 2100 117 15 6 chr4 25439087 25439420 -158849242 - L1MA3 LINE L1 -2 6303 5968 3265 172 24 74 chr4 25439420 25439707 -158848955 + L1MB1 LINE L1 5819 6119 -49 1743 134 0 38 chr4 25439716 25439977 -158848685 + AluSx SINE Alu 35 285 -27 278 217 121 97 chr4 25440078 25440285 -158848377 - L2 LINE L2 -374 2940 2729 228 137 0 0 chr4 25441547 25441598 -158847064 + (TG)n Simple_repeat Simple_repeat 1 51 0 183 114 0 0 chr4 25441656 25441691 -158846971 + (A)n Simple_repeat Simple_repeat 1 35 0 213 39 0 0 chr4 25442436 25442462 -158846200 + (TC)n Simple_repeat Simple_repeat 2 27 0 1087 182 0 0 chr4 25442620 25442796 -158845866 + AluSg/x SINE Alu 134 309 -3 291 114 0 0 chr4 25443627 25443671 -158844991 + (ATG)n Simple_repeat Simple_repeat 2 45 0 24 91 0 0 chr4 25443776 25443842 -158844820 + AT_rich Low_complexity Low_complexity 1 66 0 376 304 76 79 chr4 25444558 25444874 -158843788 + L2 LINE L2 2551 2865 -449 5394 147 48 5 chr4 25444952 25446124 -158842538 + L1MA9 LINE L1 5027 6249 -63 2167 92 3 16 chr4 25446469 25446772 -158841890 - AluSx SINE Alu -13 299 1 339 96 0 0 chr4 25446922 25446974 -158841688 + (TG)n Simple_repeat Simple_repeat 1 52 0 1492 181 7 0 chr4 25448056 25448333 -158840329 - L1MC3 LINE L1 -1160 6625 6347 262 313 70 9 chr4 25449093 25449208 -158839454 + L2 LINE L2 3150 3271 -1 27 62 0 0 chr4 25450045 25450093 -158838569 + AT_rich Low_complexity Low_complexity 1 48 0 233 286 286 9 chr4 25450835 25450940 -158837722 - L2 LINE L2 -259 3054 2921 374 299 186 33 chr4 25451051 25451325 -158837337 + MLT1J2 LTR MaLR 1 316 -134 1851 154 17 3 chr4 25451325 25451617 -158837045 - AluJo SINE Alu -16 296 1 1636 178 13 30 chr4 25452170 25452468 -158836194 - AluJo SINE Alu -19 293 1 308 313 97 23 chr4 25453924 25454100 -158834562 - MIR SINE MIR -26 236 48 22 0 0 0 chr4 25454260 25454282 -158834380 + AT_rich Low_complexity Low_complexity 1 22 0 2106 118 10 14 chr4 25454438 25454734 -158833928 + AluSg SINE Alu 2 296 -14 22 0 0 0 chr4 25454817 25454839 -158833823 + AT_rich Low_complexity Low_complexity 1 22 0 751 263 99 33 chr4 25455018 25455364 -158833298 + LTR41 LTR ERVL 3 438 -335 331 298 88 23 chr4 25455799 25455970 -158832692 + MER5A DNA MER1_type 7 188 -1 * 440 295 58 13 chr4 25455826 25455982 -158832680 - MER5A DNA MER1_type -23 166 4 181 234 21 0 chr4 25456262 25456309 -158832353 + L2 LINE L2 542 589 -2725 2268 128 6 6 chr4 25456569 25456906 -158831756 + MER1B DNA MER1_type 1 337 0 347 312 36 0 chr4 25456968 25457093 -158831569 + MIR SINE MIR 32 161 -47 273 255 41 61 chr4 25457085 25457183 -158831479 + MER91C DNA MER1_type 42 137 -3 * 227 375 42 0 chr4 25457183 25457256 -158831406 + MIR SINE MIR 177 253 -9 249 318 154 23 chr4 25457254 25457474 -158831188 + L2 LINE L2 2809 3057 -215 384 247 32 6 chr4 25457595 25457753 -158830909 + MER113 DNA MER1_type? 2 163 -358 217 269 194 0 chr4 25457873 25457940 -158830722 + L2 LINE L2 3160 3239 -33 224 297 0 0 chr4 25458426 25458500 -158830162 + (TAAA)n Simple_repeat Simple_repeat 2 75 0 2294 114 0 0 chr4 25458993 25459290 -158829372 + AluSg SINE Alu 1 297 -13 28 0 0 0 chr4 25459297 25459325 -158829337 + AT_rich Low_complexity Low_complexity 1 28 0 338 303 27 73 chr4 25460261 25460451 -158828211 + MIR SINE MIR 15 208 -54 258 32 0 0 chr4 25461164 25461195 -158827467 + (TC)n Simple_repeat Simple_repeat 1 31 0 216 0 0 0 chr4 25461194 25461218 -158827444 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 258 32 0 0 chr4 25461632 25461663 -158826999 + (TG)n Simple_repeat Simple_repeat 2 32 0 218 191 0 0 chr4 25461829 25461876 -158826786 + CT-rich Low_complexity Low_complexity 2 48 0 234 105 0 0 chr4 25461931 25461969 -158826693 + (CA)n Simple_repeat Simple_repeat 1 38 0 222 372 35 35 chr4 25462486 25462599 -158826063 + L2 LINE L2 2867 2979 -293 206 396 30 10 chr4 25463932 25464033 -158824629 - MER5A DNA MER1_type -30 159 57 2261 114 7 0 chr4 25464125 25464524 -158824138 + AluSx SINE Alu 1 401 0 318 337 32 42 chr4 25465372 25465562 -158823100 + L2 LINE L2 2871 3058 -214 2108 120 3 0 chr4 25465763 25466054 -158822608 + AluSx SINE Alu 2 293 -19 694 340 25 0 chr4 25466169 25466407 -158822255 + MIR SINE MIR 3 246 -16 296 181 16 150 chr4 25466641 25466735 -158821927 - Charlie5 DNA MER1_type -16 2569 2513 1807 167 14 0 chr4 25466735 25467028 -158821634 - AluJo SINE Alu -14 298 2 296 181 16 150 chr4 25467028 25467126 -158821536 - Charlie5 DNA MER1_type -72 2513 2403 231 271 0 0 chr4 25467129 25467177 -158821485 - Charlie5 DNA MER1_type -2543 69 22 1989 136 26 7 chr4 25467196 25467498 -158821164 - AluSx SINE Alu -4 308 1 333 221 39 13 chr4 25468410 25468487 -158820175 + MLT1L LTR MaLR 2 80 -535 270 297 97 30 chr4 25468715 25468880 -158819782 + MLT1L LTR MaLR 433 608 -7 23 0 0 0 chr4 25469033 25469056 -158819606 + AT_rich Low_complexity Low_complexity 1 23 0 300 336 21 36 chr4 25469176 25469316 -158819346 - MIR SINE MIR -50 212 75 391 240 55 48 chr4 25469402 25469548 -158819114 - MIR SINE MIR 0 262 116 1641 114 157 0 chr4 25469779 25470041 -158818621 + AluSq SINE Alu 1 303 0 387 256 29 76 chr4 25470507 25470679 -158817983 + MIR SINE MIR 49 212 -50 1904 117 3 86 chr4 25470679 25471003 -158817659 + AluSx SINE Alu 1 297 -15 248 250 0 31 chr4 25471913 25471977 -158816685 + GA-rich Low_complexity Low_complexity 4 65 0 870 130 0 32 chr4 25471978 25472163 -158816499 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 223 311 58 10 chr4 25472864 25472967 -158815695 + MIR SINE MIR 146 253 -9 440 168 115 44 chr4 25473212 25473325 -158815337 + MER110A LTR ERV1 86 206 -262 269 332 80 9 chr4 25473432 25473642 -158815020 + MIR SINE MIR 26 252 -10 1709 216 30 28 chr4 25475217 25475296 -158813366 + MSTD LTR MaLR 1 78 -318 2239 92 7 3 chr4 25475296 25475591 -158813071 + AluY SINE Alu 1 296 -15 1709 216 30 28 chr4 25475591 25475904 -158812758 + MSTD LTR MaLR 78 394 -2 184 364 9 0 chr4 25475904 25476004 -158812658 + L2 LINE L2 3210 3313 0 305 299 69 35 chr4 25477872 25478046 -158810616 - MIR SINE MIR -64 198 19 547 271 39 7 chr4 25478845 25479000 -158809662 - MIR SINE MIR -18 244 85 1188 195 13 17 chr4 25479001 25479231 -158809431 + MLT1A1 LTR MaLR 2 230 -135 339 59 0 0 chr4 25479231 25479283 -158809379 - MLT2A1 LTR ERVL 0 453 409 270 0 0 0 chr4 25479283 25479313 -158809349 + (CA)n Simple_repeat Simple_repeat 2 31 0 680 240 12 6 chr4 25479313 25479660 -158809002 + (TATATG)n Simple_repeat Simple_repeat 1 349 0 276 306 0 0 chr4 25479691 25479812 -158808850 + (TATATG)n Simple_repeat Simple_repeat 2 122 0 37 0 0 0 chr4 25479812 25479849 -158808813 + AT_rich Low_complexity Low_complexity 1 37 0 2864 67 13 11 chr4 25479855 25480231 -158808431 - MLT2A1 LTR ERVL -67 377 1 687 194 22 8 chr4 25480235 25480369 -158808293 + MLT1A1 LTR MaLR 239 374 0 248 279 0 33 chr4 25480369 25480430 -158808232 - MIR SINE MIR -173 89 31 275 221 43 93 chr4 25481232 25481372 -158807290 + MIR SINE MIR 127 259 -3 443 319 154 42 chr4 25481383 25481740 -158806922 + L2 LINE L2 2299 2695 -619 783 144 110 0 chr4 25482319 25482465 -158806197 - FRAM SINE Alu -15 161 1 665 289 72 36 chr4 25482576 25482825 -158805837 + MIR SINE MIR 5 262 0 1336 183 83 69 chr4 25482833 25483193 -158805469 + MLT1A1 LTR MaLR 1 365 0 255 79 0 0 chr4 25483462 25483500 -158805162 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 1710 192 10 13 chr4 25483504 25483811 -158804851 - AluJo SINE Alu -4 308 3 548 358 81 43 chr4 25484442 25484814 -158803848 + L2 LINE L2 2887 3272 0 2301 127 19 11 chr4 25486059 25486420 -158802242 + THE1B LTR MaLR 1 364 0 223 178 0 0 chr4 25486486 25486531 -158802131 + (TA)n Simple_repeat Simple_repeat 1 45 0 309 307 79 0 chr4 25487443 25487570 -158801092 + MIR SINE MIR 116 252 -10 2127 115 0 0 chr4 25488331 25488797 -158799865 + AluSg SINE Alu 3 468 0 236 268 18 0 chr4 25489095 25489151 -158799511 - MER58 DNA MER1_type -166 58 2 284 248 9 73 chr4 25489928 25490037 -158798625 - MIR SINE MIR 0 262 161 22 94 0 0 chr4 25490650 25490714 -158797948 + AT_rich Low_complexity Low_complexity 1 64 0 458 211 9 0 chr4 25491215 25491324 -158797338 + CT-rich Low_complexity Low_complexity 1 110 0 2042 122 14 3 chr4 25491324 25491619 -158797043 - AluSx SINE Alu -14 298 1 23 0 0 0 chr4 25491764 25491787 -158796875 + AT_rich Low_complexity Low_complexity 1 23 0 249 211 0 0 chr4 25492916 25492973 -158795689 + (TA)n Simple_repeat Simple_repeat 2 58 0 21 0 0 0 chr4 25493189 25493210 -158795452 + AT_rich Low_complexity Low_complexity 1 21 0 553 331 59 28 chr4 25493914 25494168 -158794494 + MIR SINE MIR 1 262 0 382 321 97 25 chr4 25494279 25494516 -158794146 - MIR SINE MIR -3 259 6 382 179 21 0 chr4 25494913 25495008 -158793654 + (CATTC)n Simple_repeat Simple_repeat 4 100 0 206 347 99 8 chr4 25495758 25495879 -158792783 + MER5A DNA MER1_type 7 138 -51 235 256 23 85 chr4 25496404 25496443 -158792219 - MIR SINE MIR -56 206 166 1961 154 0 7 chr4 25496443 25496736 -158791926 + AluSx SINE Alu 5 295 -17 235 256 23 85 chr4 25496736 25496825 -158791837 - MIR SINE MIR -96 166 86 1655 222 38 71 chr4 25497496 25497676 -158790986 + MLT1C LTR MaLR 6 190 -277 2326 101 0 0 chr4 25497676 25497982 -158790680 + AluSg SINE Alu 3 308 -2 1655 222 38 71 chr4 25497982 25498279 -158790383 + MLT1C LTR MaLR 190 467 0 1933 154 59 8 chr4 25498808 25499165 -158789497 + THE1C LTR MaLR 1 375 0 23 33 0 0 chr4 25499447 25499477 -158789185 + AT_rich Low_complexity Low_complexity 1 30 0 2063 114 4 0 chr4 25499642 25499958 -158788704 + AluSg SINE Alu 1 317 0 485 255 0 0 chr4 25500431 25500537 -158788125 - MER82 DNA MER2_type -547 106 1 2277 120 0 0 chr4 25500832 25501141 -158787521 + AluSx SINE Alu 1 309 -3 1011 304 113 32 chr4 25501457 25501575 -158787087 + MER69 DNA AcHobo 1 108 -1118 1676 196 3 3 chr4 25501575 25501886 -158786776 - AluJo SINE Alu -1 311 1 1011 304 113 32 chr4 25501886 25502238 -158786424 + MER69 DNA AcHobo 108 509 -717 1926 242 73 55 chr4 25502375 25503429 -158785233 + MER69 DNA AcHobo 1451 2523 -3 3234 136 76 7 chr4 25503533 25504127 -158784535 + LTR24C LTR ERV1 1 635 0 288 53 0 0 chr4 25504177 25504215 -158784447 + (TC)n Simple_repeat Simple_repeat 1 38 0 1649 216 24 11 chr4 25504255 25504626 -158784036 - MLT1E2 LTR MaLR 0 626 251 1229 110 23 0 chr4 25504631 25504804 -158783858 + MER41B LTR ERV1 365 541 -94 233 210 194 0 chr4 25504799 25504861 -158783801 - MLT1E1 LTR MaLR -380 246 173 * 2904 96 103 128 chr4 25504862 25505329 -158783333 + MER41B LTR ERV1 1 534 -101 4864 58 3 0 chr4 25505329 25505946 -158782716 - L1PA7 LINE L1 0 6154 5536 2904 96 103 128 chr4 25505946 25506041 -158782621 + MER41B LTR ERV1 534 630 -5 284 210 156 12 chr4 25506072 25506231 -158782431 - MLT1E1 LTR MaLR -431 193 11 301 215 0 161 chr4 25507097 25507246 -158781416 + MLT1H LTR MaLR 425 549 0 219 192 19 0 chr4 25507304 25507356 -158781306 + (TA)n Simple_repeat Simple_repeat 1 53 0 3029 145 6 29 chr4 25507623 25508148 -158780514 - Tigger4(Zombi) DNA MER2_type -1 2730 2218 284 261 0 0 chr4 25508153 25508218 -158780444 - Tigger4(Zombi) DNA MER2_type -2666 65 1 797 251 28 9 chr4 25508837 25509052 -158779610 - MER20 DNA MER1_type 0 219 1 347 242 205 42 chr4 25509118 25509213 -158779449 - MIR SINE MIR -4 258 180 2181 180 49 12 chr4 25509213 25509624 -158779038 + MSTB LTR MaLR 1 426 0 347 242 205 42 chr4 25509624 25509718 -158778944 - MIR SINE MIR -82 180 38 234 311 40 0 chr4 25509812 25509886 -158778776 + MIR3 SINE MIR 129 205 -3 201 108 0 0 chr4 25511982 25512019 -158776643 + (A)n Simple_repeat Simple_repeat 1 37 0 264 253 71 101 chr4 25513736 25513934 -158774728 - MLT1C LTR MaLR -270 197 6 523 288 196 14 chr4 25513976 25514354 -158774308 - L2 LINE L2 -154 3159 2719 358 325 148 39 chr4 25514555 25514860 -158773802 + L2 LINE L2 2935 3272 0 193 324 15 0 chr4 25516270 25516338 -158772324 - MIR SINE MIR -65 143 75 2175 128 3 0 chr4 25516584 25516889 -158771773 + AluSq SINE Alu 1 306 -7 339 271 50 29 chr4 25516948 25517088 -158771574 + MER103 DNA DNA 24 166 0 2170 117 0 0 chr4 25518157 25518470 -158770192 + AluSx SINE Alu 3 315 0 390 338 102 13 chr4 25518941 25519166 -158769496 + MIR SINE MIR 5 249 -13 22 0 0 0 chr4 25519171 25519193 -158769469 + AT_rich Low_complexity Low_complexity 1 22 0 207 320 39 0 chr4 25519201 25519279 -158769383 - MIR3 SINE MIR -19 189 109 233 382 10 10 chr4 25519663 25519765 -158768897 - MIR SINE MIR -62 146 45 275 331 115 22 chr4 25521838 25521977 -158766685 + MLT1K LTR MaLR 124 275 -313 2228 175 21 16 chr4 25524559 25524988 -158763674 - MSTB1 LTR MaLR 0 432 2 1380 239 32 27 chr4 25525045 25525417 -158763245 - MLT1A2 LTR MaLR 0 374 1 285 382 55 48 chr4 25525616 25526071 -158762591 - L2 LINE L2 -8 3264 2807 2164 138 122 8 chr4 25526237 25526621 -158762041 + MSTA LTR MaLR 1 428 0 209 219 14 0 chr4 25527160 25527233 -158761429 + (TA)n Simple_repeat Simple_repeat 2 75 0 1213 186 0 14 chr4 25528123 25528327 -158760335 + MLT1C LTR MaLR 24 224 -243 1883 166 78 28 chr4 25528327 25528856 -158759806 + MLT2A2 LTR ERVL 3 554 0 1178 219 4 27 chr4 25528856 25529112 -158759550 + MLT1C LTR MaLR 218 467 0 252 0 0 0 chr4 25529180 25529208 -158759454 + (A)n Simple_repeat Simple_repeat 1 28 0 252 0 0 0 chr4 25530156 25530184 -158758478 + (A)n Simple_repeat Simple_repeat 1 28 0 368 261 78 33 chr4 25530576 25530729 -158757933 - LTR33A LTR ERVL -42 481 322 206 191 24 0 chr4 25531646 25531688 -158756974 + (TTA)n Simple_repeat Simple_repeat 3 45 0 583 308 71 12 chr4 25531689 25531929 -158756733 - MIR SINE MIR -1 261 8 223 306 104 30 chr4 25532773 25532907 -158755755 - MIR SINE MIR -31 231 88 1882 148 21 3 chr4 25533552 25533843 -158754819 - AluSx SINE Alu -14 298 3 213 333 0 12 chr4 25534027 25534108 -158754554 + (TAG)n Simple_repeat Simple_repeat 1 80 0 371 262 48 24 chr4 25534121 25534247 -158754415 - MIR SINE MIR -15 247 119 325 264 71 20 chr4 25534353 25534550 -158754112 - L1M4 LINE L1 -2967 3179 2973 504 227 86 15 chr4 25534845 25535003 -158753659 + HsTC2 DNA Tc2 1228 1566 -332 286 284 43 0 chr4 25535004 25535120 -158753542 + HsTC2 DNA Tc2 1773 1893 -5 345 296 92 28 chr4 25535129 25535393 -158753269 - L1M4 LINE L1 -3181 2965 2686 259 203 27 0 chr4 25536405 25536479 -158752183 + CT-rich Low_complexity Low_complexity 3 78 0 22 56 0 0 chr4 25536723 25536759 -158751903 + AT_rich Low_complexity Low_complexity 1 36 0 443 253 76 102 chr4 25536785 25537010 -158751652 + MLT1J2 LTR MaLR 210 432 -18 2029 129 0 3 chr4 25538268 25538577 -158750085 + AluSq SINE Alu 1 308 0 192 383 9 9 chr4 25538581 25538688 -158749974 + L2 LINE L2 2892 2998 -274 2437 75 3 0 chr4 25538970 25539276 -158749386 + AluSg SINE Alu 1 307 -3 22 0 0 0 chr4 25539463 25539485 -158749177 + AT_rich Low_complexity Low_complexity 1 22 0 235 375 102 5 chr4 25541107 25541323 -158747339 - MIR SINE MIR -6 256 20 396 311 52 40 chr4 25542390 25542619 -158746043 + MIR SINE MIR 38 262 0 479 216 13 173 chr4 25542776 25542925 -158745737 - MER112 DNA MER1_type -7 253 174 765 61 0 0 chr4 25542925 25543024 -158745638 + (GAATG)n Simple_repeat Simple_repeat 2 100 0 479 216 13 173 chr4 25543024 25543175 -158745487 - MER112 DNA MER1_type -86 174 1 705 307 27 9 chr4 25544185 25544410 -158744252 + MIR SINE MIR 32 260 -2 240 235 29 15 chr4 25544886 25544954 -158743708 + L2 LINE L2 3198 3266 -6 281 325 107 12 chr4 25545515 25545684 -158742978 - MIR SINE MIR -76 186 2 396 313 95 21 chr4 25546027 25546270 -158742392 - MIR SINE MIR 0 262 2 23 33 0 0 chr4 25546353 25546383 -158742279 + AT_rich Low_complexity Low_complexity 1 30 0 291 301 98 22 chr4 25547105 25547288 -158741374 + L2 LINE L2 3112 3308 -5 188 304 107 65 chr4 25548109 25548277 -158740385 + MIR SINE MIR 32 206 -56 186 71 0 0 chr4 25548470 25548498 -158740164 + (CAA)n Simple_repeat Simple_repeat 2 29 0 227 269 0 0 chr4 25548500 25548552 -158740110 - MIR SINE MIR 0 262 211 796 310 22 50 chr4 25548707 25549071 -158739591 - L3 LINE CR1 -9 1568 1215 21 57 0 0 chr4 25549094 25549129 -158739533 + AT_rich Low_complexity Low_complexity 1 35 0 351 0 0 0 chr4 25550076 25550115 -158738547 + (TA)n Simple_repeat Simple_repeat 1 39 0 225 154 31 62 chr4 25550115 25550180 -158738482 - L1MC4 LINE L1 -1339 6703 6641 279 242 0 22 chr4 25550194 25550285 -158738377 + L1MC4 LINE L1 6615 6703 -1339 211 276 17 0 chr4 25550311 25550369 -158738293 - L2 LINE L2 -213 3059 3001 247 353 83 29 chr4 25550591 25550795 -158737867 + L2 LINE L2 3098 3312 -1 605 259 14 0 chr4 25551278 25551417 -158737245 - MER45A DNA AcHobo -34 144 4 274 281 0 0 chr4 25551437 25551501 -158737161 + GA-rich Low_complexity Low_complexity 3 66 0 336 345 89 54 chr4 25551766 25552192 -158736470 + L3 LINE CR1 977 1417 -160 216 0 0 0 chr4 25552267 25552291 -158736371 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 850 216 107 20 chr4 25552314 25552661 -158736001 + LTR37A LTR ERV1 50 426 0 279 333 29 9 chr4 25552675 25552780 -158735882 + L3 LINE CR1 1454 1560 -17 354 23 0 0 chr4 25554013 25554056 -158734606 + (TG)n Simple_repeat Simple_repeat 2 44 0 208 299 144 10 chr4 25555363 25555460 -158733202 + MIR SINE MIR 140 249 -13 466 103 0 0 chr4 25555805 25555873 -158732789 - MADE1 DNA Mariner 0 80 13 4462 69 5 2 chr4 25555893 25556470 -158732192 - L1PA8 LINE L1 -8 6164 5586 627 139 0 0 chr4 25556571 25556672 -158731990 + AluJb SINE Alu 211 311 -1 188 207 103 52 chr4 25557946 25558004 -158730658 - MIR SINE MIR -200 62 2 1608 188 7 82 chr4 25559904 25560308 -158728354 - MLT1A2 LTR MaLR 0 374 1 783 209 39 0 chr4 25560366 25560548 -158728114 - MER53 DNA DNA 0 189 1 301 287 10 10 chr4 25561207 25561308 -158727354 - MIR SINE MIR -61 201 101 180 0 0 0 chr4 25561344 25561364 -158727298 + (CAT)n Simple_repeat Simple_repeat 2 21 0 26 0 0 0 chr4 25561403 25561429 -158727233 + AT_rich Low_complexity Low_complexity 1 26 0 400 309 63 31 chr4 25562234 25562425 -158726237 - MIR SINE MIR -64 198 2 198 315 36 81 chr4 25563043 25563154 -158725508 - L2 LINE L2 -3 3310 3205 24 96 0 0 chr4 25563805 25563878 -158724784 + AT_rich Low_complexity Low_complexity 1 73 0 21 36 0 0 chr4 25564086 25564114 -158724548 + AT_rich Low_complexity Low_complexity 1 28 0 1667 178 28 14 chr4 25564854 25565141 -158723521 + AluJb SINE Alu 1 291 -21 1694 170 39 3 chr4 25566009 25566291 -158722371 - AluJb SINE Alu -20 292 1 240 314 29 39 chr4 25566505 25566607 -158722055 - MIR SINE MIR -79 183 83 262 358 40 55 chr4 25566620 25566821 -158721841 + L2 LINE L2 3070 3267 -5 2338 83 0 3 chr4 25567579 25567891 -158720771 + AluY SINE Alu 1 311 0 284 125 0 18 chr4 25567924 25567980 -158720682 + (GA)n Simple_repeat Simple_repeat 2 56 0 14454 141 27 6 chr4 25569067 25569793 -158718869 + Tigger1 DNA MER2_type 1 710 -1708 2216 156 50 35 chr4 25569793 25569982 -158718680 + MSTA LTR MaLR 1 186 -242 1866 177 0 13 chr4 25569982 25570298 -158718364 + AluSx SINE Alu 1 312 0 2216 156 50 35 chr4 25570298 25570530 -158718132 + MSTA LTR MaLR 186 428 0 14454 141 27 6 chr4 25570530 25570768 -158717894 + Tigger1 DNA MER2_type 710 941 -1477 1624 149 3 96 chr4 25570768 25571103 -158717559 + AluJo SINE Alu 1 304 -8 14454 141 27 6 chr4 25571103 25572502 -158716160 + Tigger1 DNA MER2_type 941 2415 -3 925 317 69 30 chr4 25572742 25572968 -158715694 - L2 LINE L2 0 3313 3097 1800 186 2 63 chr4 25572968 25573383 -158715279 - MLT1B LTR MaLR 0 390 1 925 317 69 30 chr4 25573383 25573731 -158714931 - L2 LINE L2 -216 3097 2720 262 278 0 2 chr4 25573745 25573809 -158714853 + MER58 DNA MER1_type 1 54 -170 4017 47 22 4 chr4 25574248 25574754 -158713908 - L1PA5 LINE L1 0 6154 5640 1923 144 0 27 chr4 25574978 25575277 -158713385 + AluSx SINE Alu 1 291 -21 365 262 60 7 chr4 25575977 25576126 -158712536 + MER113 DNA MER1_type? 5 161 -360 22 35 0 0 chr4 25576148 25576177 -158712485 + AT_rich Low_complexity Low_complexity 1 29 0 303 311 118 0 chr4 25576274 25576393 -158712269 - L2 LINE L2 -4 3268 3136 280 268 9 80 chr4 25576493 25576506 -158712156 - MIR SINE MIR -92 170 158 2454 62 3 0 chr4 25576506 25576795 -158711867 - AluSx SINE Alu -7 305 16 280 268 9 80 chr4 25576795 25576893 -158711769 - MIR SINE MIR -104 158 67 1234 234 23 40 chr4 25577140 25577486 -158711176 + MLT1A1 LTR MaLR 26 365 0 216 0 0 0 chr4 25577534 25577558 -158711104 + (T)n Simple_repeat Simple_repeat 1 24 0 24 0 0 0 chr4 25577981 25578005 -158710657 + AT_rich Low_complexity Low_complexity 1 24 0 237 258 8 100 chr4 25579382 25579437 -158709225 + MIR SINE MIR 76 116 -146 2230 103 7 3 chr4 25579437 25579739 -158708923 - AluSc SINE Alu -6 303 1 237 258 8 100 chr4 25579739 25579803 -158708859 + MIR SINE MIR 116 184 -78 188 372 99 8 chr4 25579896 25580017 -158708645 + L2 LINE L2 3141 3272 0 22 35 0 0 chr4 25580769 25580798 -158707864 + AT_rich Low_complexity Low_complexity 1 29 0 540 275 123 8 chr4 25580849 25581052 -158707610 + MIR SINE MIR 3 226 -36 1645 143 102 16 chr4 25581201 25581516 -158707146 - MER46B DNA MER2_type -19 217 1 2305 65 7 0 chr4 25581666 25581959 -158706703 + AluY SINE Alu 1 295 -16 2817 196 73 30 chr4 25582074 25582285 -158706377 + L1MB8 LINE L1 5454 5654 -524 2140 96 0 14 chr4 25582285 25582577 -158706085 + AluSc SINE Alu 1 288 -21 2817 196 73 30 chr4 25582577 25582902 -158705760 + L1MB8 LINE L1 5654 6030 -148 2056 127 0 3 chr4 25582902 25583223 -158705439 - AluSx SINE Alu 0 320 1 2817 196 73 30 chr4 25583223 25583379 -158705283 + L1MB8 LINE L1 6030 6178 0 1398 135 46 29 chr4 25584251 25584568 -158704094 + THE1C LTR MaLR 1 375 0 659 288 91 18 chr4 25584734 25585130 -158703532 - HAL1 LINE L1 -241 2266 1842 415 207 21 29 chr4 25585243 25585383 -158703279 - L1MC4a LINE L1 -2 7806 7668 1953 230 49 26 chr4 25585389 25585827 -158702835 - L1MD2 LINE L1 -216 6537 6083 1822 175 0 14 chr4 25585827 25586124 -158702538 - AluJb SINE Alu -19 293 1 1953 230 49 26 chr4 25586124 25586219 -158702443 - L1MD2 LINE L1 -670 6083 5992 2590 188 59 40 chr4 25586220 25587022 -158701640 - L1MD2 LINE L1 -3890 2650 1929 1288 229 99 43 chr4 25587022 25587110 -158701552 + MLT1C LTR MaLR 1 83 -384 1677 150 81 36 chr4 25587110 25587469 -158701193 - THE1C LTR MaLR 0 375 1 1288 229 99 43 chr4 25587469 25587822 -158700840 + MLT1C LTR MaLR 83 467 0 872 291 106 49 chr4 25587835 25588468 -158700194 - HAL1 LINE L1 -1836 671 3 1560 170 3 87 chr4 25588579 25588902 -158699760 - AluJo SINE Alu -10 302 7 998 171 93 0 chr4 25588944 25589160 -158699502 - L1MA9 LINE L1 -4 6308 6073 216 0 0 0 chr4 25589494 25589518 -158699144 + (TC)n Simple_repeat Simple_repeat 1 24 0 475 206 142 64 chr4 25589567 25589708 -158698954 - MIR SINE MIR -81 181 30 219 100 0 100 chr4 25589705 25589755 -158698907 + MIR SINE MIR 218 262 0 * 204 162 15 59 chr4 25589975 25590003 -158698659 + A-rich Low_complexity Low_complexity 4 32 -36 1780 145 49 30 chr4 25590003 25590307 -158698355 + AluJb SINE Alu 3 312 0 204 162 15 59 chr4 25590307 25590346 -158698316 + A-rich Low_complexity Low_complexity 32 68 0 2099 154 8 46 chr4 25591228 25591453 -158697209 - THE1C LTR MaLR 0 375 170 1887 139 20 33 chr4 25591453 25591755 -158696907 + AluSx SINE Alu 1 298 -14 2099 154 8 46 chr4 25591755 25591919 -158696743 - THE1C LTR MaLR -205 170 1 199 302 54 62 chr4 25591921 25592050 -158696612 - MIR3 SINE MIR -36 172 45 25115 141 16 20 chr4 25592129 25598546 -158690116 + L1PA8A LINE L1 3 6446 0 523 329 98 31 chr4 25599201 25599618 -158689044 + L1ME LINE L1 5313 5757 -364 558 293 186 51 chr4 25601033 25601706 -158686956 + L2 LINE L2 2566 3313 0 206 181 14 153 chr4 25601833 25601905 -158686757 + MIR SINE MIR 127 188 -74 412 303 50 40 chr4 25602075 25602273 -158686389 + MIR SINE MIR 11 210 -52 192 40 0 0 chr4 25602691 25602716 -158685946 + (T)n Simple_repeat Simple_repeat 1 25 0 601 197 14 48 chr4 25602772 25602919 -158685743 + FLAM_A SINE Alu 1 142 0 808 167 15 0 chr4 25603242 25603374 -158685288 + AluJb SINE Alu 163 296 -16 378 277 112 37 chr4 25604799 25604988 -158683674 - MIR SINE MIR -50 212 6 202 339 0 0 chr4 25605486 25605545 -158683117 - L2 LINE L2 -1 3271 3213 1034 146 152 3 chr4 25606157 25606480 -158682182 + MER33 DNA MER1_type 5 360 -3 21 36 0 0 chr4 25606559 25606587 -158682075 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 25606820 25606841 -158681821 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr4 25606915 25606958 -158681704 + AT_rich Low_complexity Low_complexity 1 43 0 850 165 0 8 chr4 25607286 25607419 -158681243 + FRAM SINE Alu 21 152 -24 329 203 0 0 chr4 25607577 25607636 -158681026 + L2 LINE L2 3251 3309 -4 22 35 0 0 chr4 25607780 25607809 -158680853 + AT_rich Low_complexity Low_complexity 1 29 0 443 298 107 6 chr4 25609479 25609575 -158679087 - MIR SINE MIR -2 260 175 249 33 0 0 chr4 25609575 25609605 -158679057 + (TTA)n Simple_repeat Simple_repeat 3 32 0 443 298 107 6 chr4 25609605 25609686 -158678976 - MIR SINE MIR -87 175 65 224 341 95 24 chr4 25609819 25609945 -158678717 - MIR SINE MIR -119 143 9 501 272 99 71 chr4 25610103 25610397 -158678265 + L2 LINE L2 3010 3311 -2 441 319 56 30 chr4 25610434 25610666 -158677996 - MIR SINE MIR -9 253 16 186 317 17 17 chr4 25610889 25610949 -158677713 - MIR SINE MIR -181 81 22 819 101 0 0 chr4 25611222 25611341 -158677321 + (TTTC)n Simple_repeat Simple_repeat 2 120 0 1886 104 4 19 chr4 25611353 25611622 -158677040 - AluSq SINE Alu -48 265 1 2203 115 0 0 chr4 25611867 25612163 -158676499 - AluSc SINE Alu -13 296 1 219 294 83 28 chr4 25613113 25613222 -158675440 - MIR SINE MIR -50 212 98 1854 125 44 14 chr4 25613276 25613571 -158675091 - AluSx SINE Alu -8 304 1 294 333 30 10 chr4 25613829 25613928 -158674734 + MIR SINE MIR 41 141 -67 543 271 132 39 chr4 25613969 25614249 -158674413 - L2 LINE L2 0 3313 3008 227 260 78 13 chr4 25614369 25614446 -158674216 + L2 LINE L2 3189 3270 -43 1961 133 29 40 chr4 25615867 25616244 -158672418 + THE1C LTR MaLR 1 373 -2 497 262 69 64 chr4 25616817 25617283 -158671379 - L1MC5 LINE L1 -44 7917 7450 2749 183 10 4 chr4 25618017 25618510 -158670152 - Tigger7 DNA MER2_type -237 496 1 1349 241 111 28 chr4 25620277 25620708 -158667954 - MLT1C LTR MaLR 0 467 1 488 319 79 63 chr4 25621588 25622146 -158666516 - L1ME4a LINE L1 -216 5905 5334 1911 166 29 16 chr4 25622146 25622531 -158666131 + MLT1B LTR MaLR 1 390 0 488 319 79 63 chr4 25622531 25622603 -158666059 - L1ME4a LINE L1 -787 5334 5265 343 270 0 0 chr4 25623657 25623731 -158664931 - L2 LINE L2 0 3272 3199 2026 219 46 38 chr4 25624842 25625339 -158663323 + MLT1D LTR MaLR 3 503 -2 2143 117 0 0 chr4 25626364 25626678 -158661984 - AluSg SINE Alu 0 314 1 227 336 64 7 chr4 25627642 25627782 -158660880 - MIR SINE MIR -10 252 105 270 349 54 12 chr4 25627838 25628004 -158660658 + L2 LINE L2 3141 3313 0 242 191 0 16 chr4 25628036 25628099 -158660563 + GA-rich Low_complexity Low_complexity 1 62 0 221 274 0 15 chr4 25628216 25628351 -158660311 + (TATATG)n Simple_repeat Simple_repeat 2 134 0 24 85 0 0 chr4 25629066 25629125 -158659537 + AT_rich Low_complexity Low_complexity 1 59 0 1983 114 7 35 chr4 25630288 25630624 -158658038 - AluY SINE Alu 0 328 1 300 374 27 21 chr4 25630808 25630995 -158657667 + MIR3 SINE MIR 12 199 -9 210 370 109 8 chr4 25631262 25631381 -158657281 + MIR3 SINE MIR 33 163 -45 364 21 0 0 chr4 25631395 25631442 -158657220 - L1PA3 LINE L1 0 6155 6109 24 32 0 0 chr4 25631659 25631690 -158656972 + AT_rich Low_complexity Low_complexity 1 31 0 613 302 73 58 chr4 25632165 25632546 -158656116 - MLT1I LTR MaLR -12 397 11 361 257 40 159 chr4 25632696 25632754 -158655908 + L2 LINE L2 3030 3093 -179 1595 239 7 38 chr4 25632754 25633201 -158655461 + MER63B DNA MER1_type 1 433 -3 361 257 40 159 chr4 25633201 25633418 -158655244 + L2 LINE L2 3093 3272 0 422 95 21 44 chr4 25635144 25635234 -158653428 - LTR41 LTR ERVL 0 795 688 21 36 0 0 chr4 25636281 25636309 -158652353 + AT_rich Low_complexity Low_complexity 1 28 0 32 26 0 0 chr4 25636380 25636419 -158652243 + AT_rich Low_complexity Low_complexity 1 39 0 305 330 48 43 chr4 25637170 25637295 -158651367 + L3 LINE CR1 1365 1493 -84 1788 177 0 7 chr4 25637295 25637595 -158651067 - AluJb SINE Alu -14 298 1 305 330 48 43 chr4 25637595 25637678 -158650984 + L3 LINE CR1 1493 1574 -3 22 56 0 0 chr4 25638237 25638273 -158650389 + AT_rich Low_complexity Low_complexity 1 36 0 397 257 29 0 chr4 25638315 25638420 -158650242 + L1MEc LINE L1 66 173 -6223 21 36 0 0 chr4 25638656 25638684 -158649978 + AT_rich Low_complexity Low_complexity 1 28 0 186 286 60 12 chr4 25639280 25639364 -158649298 - L2 LINE L2 -44 3269 3182 1923 277 173 10 chr4 25639486 25640470 -158648192 - L2 LINE L2 -184 3129 1993 1985 160 0 0 chr4 25640591 25640879 -158647783 - AluSx SINE Alu -24 288 1 861 241 48 66 chr4 25640907 25641326 -158647336 - MLT1A1 LTR MaLR 0 365 4 334 382 76 0 chr4 25641596 25641753 -158646909 - L2 LINE L2 0 3272 3104 23 33 0 0 chr4 25642555 25642585 -158646077 + AT_rich Low_complexity Low_complexity 1 30 0 243 300 29 0 chr4 25642585 25642655 -158646007 - L2 LINE L2 -16 3297 3226 223 343 37 46 chr4 25644085 25644193 -158644469 - MIR SINE MIR -140 122 16 320 357 18 9 chr4 25647140 25647252 -158641410 - MIR SINE MIR -149 113 1 4426 36 25 0 chr4 25647346 25647894 -158640768 + L1PA5 LINE L1 5593 6154 0 1971 154 3 3 chr4 25648351 25648745 -158639917 - AluSq SINE Alu 0 394 1 264 111 0 0 chr4 25649854 25649890 -158638772 - 5S rRNA rRNA -79 42 7 350 165 0 51 chr4 25649890 25649969 -158638693 + L1PA10 LINE L1 6091 6165 -3 944 200 68 10 chr4 25651145 25651350 -158637312 + MER20 DNA MER1_type 2 218 -1 1876 135 7 16 chr4 25651894 25652198 -158636464 + AluSx SINE Alu 4 304 -8 1598 87 5 0 chr4 25652997 25653204 -158635458 + AluY SINE Alu 1 208 -103 902 96 0 0 chr4 25653204 25653432 -158635230 + AluY SINE Alu 158 385 0 888 0 8 0 chr4 25653329 25653665 -158634997 + (TAAAA)n Simple_repeat Simple_repeat 1 338 0 399 289 28 33 chr4 25653860 25654040 -158634622 + CT-rich Low_complexity Low_complexity 2 180 0 1806 140 10 10 chr4 25654669 25654983 -158633679 + L1MA4A LINE L1 5981 6294 -9 416 271 24 41 chr4 25655238 25655428 -158633234 - MIR SINE MIR -46 216 37 388 320 72 17 chr4 25656421 25656602 -158632060 + MIR SINE MIR 10 200 -62 2258 107 0 31 chr4 25656943 25657260 -158631402 - AluSc SINE Alu -2 307 1 364 283 0 9 chr4 25657491 25657604 -158631058 + L1MC/D LINE L1 5678 5789 -2019 253 281 216 14 chr4 25657681 25657820 -158630842 - MIR3 SINE MIR -41 167 1 388 313 17 17 chr4 25660035 25660150 -158628512 - MER5A DNA MER1_type -68 121 7 393 22 0 0 chr4 25660483 25660529 -158628133 + (TG)n Simple_repeat Simple_repeat 2 47 0 376 331 38 17 chr4 25662704 25662981 -158625681 + L2 LINE L2 2975 3304 -9 4932 212 44 64 chr4 25663002 25665036 -158623626 - L1MD1 LINE L1 -7 6235 4281 320 64 0 0 chr4 25665036 25665079 -158623583 + L1PA2 LINE L1 6109 6155 0 4932 212 44 64 chr4 25665079 25665959 -158622703 - L1MD1 LINE L1 -1961 4281 3385 1476 217 16 36 chr4 25666003 25666367 -158622295 + MLT1A2 LTR MaLR 4 360 -14 2170 121 3 0 chr4 25666448 25666753 -158621909 + AluSx SINE Alu 1 306 -6 3274 167 18 23 chr4 25666895 25667558 -158621104 - L1MA7 LINE L1 0 6291 5632 2775 159 17 26 chr4 25667558 25668341 -158620321 + L1MA7 LINE L1 4857 5634 -657 903 346 98 13 chr4 25668367 25669190 -158619472 + L2 LINE L2 2418 3313 0 207 0 0 0 chr4 25670945 25670968 -158617694 + (TTA)n Simple_repeat Simple_repeat 2 24 0 225 0 0 0 chr4 25671110 25671135 -158617527 + (T)n Simple_repeat Simple_repeat 1 25 0 217 132 0 0 chr4 25673499 25673537 -158615125 + (TTTTTA)n Simple_repeat Simple_repeat 3 40 0 21 0 0 0 chr4 25673599 25673620 -158615042 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr4 25673812 25673852 -158614810 + AT_rich Low_complexity Low_complexity 1 40 0 2177 94 0 7 chr4 25674865 25675173 -158613489 - AluSx SINE Alu 0 306 1 25 0 0 0 chr4 25675173 25675198 -158613464 + AT_rich Low_complexity Low_complexity 1 25 0 276 331 32 16 chr4 25675223 25675347 -158613315 + LTR33 LTR ERVL 152 277 -244 207 0 0 0 chr4 25675601 25675624 -158613038 + (A)n Simple_repeat Simple_repeat 1 23 0 2138 124 3 3 chr4 25676453 25676759 -158611903 + AluSg SINE Alu 1 306 -4 483 326 61 13 chr4 25677038 25677268 -158611394 - LTR33 LTR ERVL -174 347 107 2343 133 73 2 chr4 25677728 25678126 -158610536 - MSTB LTR MaLR 0 426 1 399 151 32 0 chr4 25678274 25678324 -158610338 + (TA)n Simple_repeat Simple_repeat 2 97 0 284 70 23 0 chr4 25678324 25678367 -158610295 + (TA)n Simple_repeat Simple_repeat 2 45 0 222 293 50 40 chr4 25678952 25679051 -158609611 + MIR SINE MIR 48 147 -115 239 296 0 0 chr4 25679296 25679350 -158609312 - L2 LINE L2 0 3272 3219 1141 186 13 9 chr4 25680028 25680259 -158608403 - MER46A DNA MER2_type -2 234 3 229 279 93 0 chr4 25680600 25680686 -158607976 + L2 LINE L2 3008 3101 -212 424 263 0 0 chr4 25680719 25680818 -158607844 + MER94 DNA DNA 21 119 -15 205 372 100 17 chr4 25680820 25681000 -158607662 + L2 LINE L2 3110 3304 -9 4675 8 0 0 chr4 25681118 25681645 -158607017 - L1PA2 LINE L1 0 6155 5629 24 100 0 0 chr4 25681954 25682034 -158606628 + AT_rich Low_complexity Low_complexity 1 80 0 333 284 47 39 chr4 25682749 25682876 -158605786 - MIR3 SINE MIR -8 200 73 241 403 13 13 chr4 25682952 25683101 -158605561 + MIR3 SINE MIR 2 150 -58 321 51 0 0 chr4 25683538 25683577 -158605085 - L1PA5 LINE L1 -205 5949 5911 1621 53 0 5 chr4 25683577 25683774 -158604888 + L1PA5 LINE L1 5942 6146 -8 21 36 0 0 chr4 25683926 25683954 -158604708 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr4 25684006 25684041 -158604621 + AT_rich Low_complexity Low_complexity 1 35 0 1135 124 54 0 chr4 25684318 25684503 -158604159 - L1PA14 LINE L1 -1 6160 5966 1437 301 83 32 chr4 25685151 25685183 -158603479 - L2 LINE L2 0 3313 3284 1401 227 70 55 chr4 25685183 25685641 -158603021 + MLT1C LTR MaLR 1 465 -2 1437 301 83 32 chr4 25685641 25686450 -158602212 - L2 LINE L2 -29 3284 2379 2400 67 3 22 chr4 25686557 25686873 -158601789 - AluY SINE Alu -1 310 1 240 221 0 87 chr4 25686906 25687033 -158601629 + CT-rich Low_complexity Low_complexity 1 116 0 220 202 20 61 chr4 25687397 25687496 -158601166 + (TA)n Simple_repeat Simple_repeat 2 96 0 184 87 0 43 chr4 25687509 25687555 -158601107 + (TTTAA)n Simple_repeat Simple_repeat 3 46 0 206 81 27 0 chr4 25687620 25687657 -158601005 + (TA)n Simple_repeat Simple_repeat 1 38 0 1665 146 30 43 chr4 25687971 25688273 -158600389 - AluSx SINE Alu -14 298 1 1889 196 107 35 chr4 25688490 25688974 -158599688 - MLT1F LTR MaLR 0 542 24 628 226 0 0 chr4 25689678 25689793 -158598869 - FLAM_A SINE Alu -19 123 9 231 114 0 0 chr4 25690457 25690501 -158598161 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 2091 177 14 0 chr4 25690605 25690826 -158597836 + THE1C LTR MaLR 1 230 -145 3852 56 4 2 chr4 25690826 25691311 -158597351 + L1PA7 LINE L1 5669 6154 0 2091 177 14 0 chr4 25691311 25691457 -158597205 + THE1C LTR MaLR 230 373 -2 1522 185 24 80 chr4 25691575 25691986 -158596676 + MLT1B LTR MaLR 1 388 -2 260 229 48 67 chr4 25692251 25692356 -158596306 + MIR SINE MIR 150 252 -10 2840 185 88 98 chr4 25692517 25692854 -158595808 + L1MC3 LINE L1 6793 7132 -653 228 292 0 14 chr4 25692854 25692926 -158595736 + MLT1F1 LTR MaLR 40 110 -457 2840 185 88 98 chr4 25692926 25693355 -158595307 + L1MC3 LINE L1 7132 7621 -164 1777 148 25 14 chr4 25693355 25693638 -158595024 + AluJb SINE Alu 1 286 -26 2840 185 88 98 chr4 25693638 25693782 -158594880 + L1MC3 LINE L1 7621 7765 -20 231 389 23 78 chr4 25694590 25694937 -158593725 - L2 LINE L2 -27 3245 2918 247 308 54 32 chr4 25695026 25695211 -158593451 - L2 LINE L2 -431 2883 2695 352 294 112 69 chr4 25695490 25695766 -158592896 - L2 LINE L2 -4 3309 3022 2220 112 0 0 chr4 25696017 25696313 -158592349 - AluSq SINE Alu -17 296 1 2436 141 30 30 chr4 25696386 25696627 -158592035 - MSTA LTR MaLR -2 426 183 2188 119 0 6 chr4 25696627 25696938 -158591724 - AluSg SINE Alu -1 309 1 2436 141 30 30 chr4 25696938 25697122 -158591540 - MSTA LTR MaLR -244 184 1 23 33 0 0 chr4 25697189 25697219 -158591443 + AT_rich Low_complexity Low_complexity 1 30 0 2879 31 37 0 chr4 25697219 25697573 -158591089 - L1PA5 LINE L1 -13 6141 5775 7848 38 0 0 chr4 25697575 25698531 -158590131 + L1P LINE L1 1592 2547 -3599 300 313 118 31 chr4 25698678 25698692 -158589970 - L1M4 LINE L1 -1176 4970 4959 1469 237 39 61 chr4 25698692 25699250 -158589412 + LTR55 LTR ERV 1 546 -2 300 313 118 31 chr4 25699250 25699430 -158589232 - L1M4 LINE L1 -1187 4959 4759 368 282 28 36 chr4 25699532 25699780 -158588882 - L1M4 LINE L1 -1523 4623 4378 330 267 96 99 chr4 25700297 25700702 -158587960 - L1M4 LINE L1 -2649 3497 3094 209 328 0 30 chr4 25701500 25701567 -158587095 - MIR SINE MIR -178 84 20 225 65 0 0 chr4 25702179 25702210 -158586452 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 24 0 0 0 chr4 25702324 25702348 -158586314 + AT_rich Low_complexity Low_complexity 1 24 0 249 267 47 12 chr4 25703048 25703134 -158585528 + L3 LINE CR1 624 712 -865 309 247 55 0 chr4 25703436 25703509 -158585153 + L2 LINE L2 3203 3279 -34 1252 204 81 32 chr4 25703805 25704149 -158584513 - MLT1A2 LTR MaLR -13 361 1 191 150 125 0 chr4 25705089 25705129 -158583533 + MIR SINE MIR 100 144 -64 43 0 0 0 chr4 25705380 25705423 -158583239 + AT_rich Low_complexity Low_complexity 1 43 0 2163 103 0 20 chr4 25705427 25705728 -158582934 - AluSg SINE Alu -15 295 1 1953 166 0 0 chr4 25706429 25706730 -158581932 + AluSx SINE Alu 1 301 -11 793 291 160 0 chr4 25707181 25707456 -158581206 - MLT1I LTR MaLR 0 409 91 423 272 123 31 chr4 25707527 25707722 -158580940 - MIR SINE MIR -21 241 29 493 311 145 23 chr4 25707953 25708297 -158580365 - MLT1J2 LTR MaLR 0 450 65 222 100 0 0 chr4 25708709 25708739 -158579923 + MIR SINE MIR 119 148 -114 711 247 5 32 chr4 25709309 25709499 -158579163 - MER5A DNA MER1_type -3 186 2 185 337 105 23 chr4 25709941 25710027 -158578635 + MIR SINE MIR 96 188 -74 268 282 13 13 chr4 25710072 25710150 -158578512 + CT-rich Low_complexity Low_complexity 3 80 0 1405 207 70 0 chr4 25711098 25711369 -158577293 + AluJb SINE Alu 1 290 -22 25 65 0 0 chr4 25711370 25711416 -158577246 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr4 25713106 25713127 -158575535 + AT_rich Low_complexity Low_complexity 1 21 0 408 20 0 0 chr4 25713323 25713372 -158575290 + (TG)n Simple_repeat Simple_repeat 2 50 0 221 0 0 33 chr4 25713372 25713402 -158575260 + (GTTTG)n Simple_repeat Simple_repeat 1 29 0 183 204 0 0 chr4 25713818 25713872 -158574790 + CT-rich Low_complexity Low_complexity 2 55 0 635 227 16 7 chr4 25713981 25714148 -158574514 + MLT1E2 LTR MaLR 442 611 -13 732 267 84 18 chr4 25714959 25715184 -158573478 - MIR SINE MIR -12 250 11 1267 246 77 31 chr4 25715184 25715477 -158573185 + MLT1D LTR MaLR 1 327 -178 1617 119 5 0 chr4 25715477 25715733 -158572929 + AluSg/x SINE Alu 65 321 0 1267 246 77 31 chr4 25715733 25715918 -158572744 + MLT1D LTR MaLR 327 502 -3 2363 76 3 0 chr4 25716527 25716817 -158571845 + AluSx SINE Alu 2 292 -20 313 307 27 67 chr4 25717858 25718008 -158570654 + MIR SINE MIR 33 176 -86 21 36 0 0 chr4 25718151 25718179 -158570483 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr4 25718354 25718383 -158570279 + AT_rich Low_complexity Low_complexity 1 29 0 228 184 13 26 chr4 25718875 25718951 -158569711 + CT-rich Low_complexity Low_complexity 1 75 0 462 363 57 60 chr4 25719888 25720238 -158568424 - L2 LINE L2 0 3272 2924 661 306 73 7 chr4 25720334 25720864 -158567798 - L2 LINE L2 -174 3139 2574 1170 190 56 7 chr4 25721675 25721944 -158566718 + L1MA4 LINE L1 6015 6296 -4 365 312 16 40 chr4 25722261 25722386 -158566276 + MER5A DNA MER1_type 1 122 -67 265 308 0 0 chr4 25722761 25722839 -158565823 + MIR SINE MIR 185 262 0 22 80 0 0 chr4 25722934 25722984 -158565678 + AT_rich Low_complexity Low_complexity 1 50 0 1004 186 62 19 chr4 25723749 25723959 -158564703 + MER58A DNA MER1_type 2 220 -4 202 296 74 12 chr4 25724040 25724121 -158564541 + MIR SINE MIR 92 177 -85 2135 135 33 30 chr4 25724861 25725224 -158563438 - THE1B LTR MaLR 0 364 1 182 65 65 0 chr4 25725693 25725724 -158562938 + T-rich Low_complexity Low_complexity 2 34 0 421 79 0 16 chr4 25726530 25726593 -158562069 - L1P LINE L1 -730 5424 5363 * 867 141 14 0 chr4 25726590 25726732 -158561930 + L1P3 LINE L1 5429 5572 -582 399 332 97 20 chr4 25727563 25727759 -158560903 - MIR SINE MIR -20 242 32 30 0 0 0 chr4 25728472 25728502 -158560160 + AT_rich Low_complexity Low_complexity 1 30 0 340 202 12 12 chr4 25728522 25728606 -158560056 - L1M4 LINE L1 -3467 2679 2596 * 3685 246 36 5 chr4 25728603 25729740 -158558922 + L1M4 LINE L1 2610 3781 -2365 1151 144 6 2 chr4 25729727 25729933 -158558729 + L1MB8 LINE L1 5809 5991 -187 * 5946 141 20 12 chr4 25729930 25730419 -158558243 + L1MA6 LINE L1 5275 5759 -541 328 85 0 34 chr4 25730419 25730478 -158558184 + (TAAA)n Simple_repeat Simple_repeat 4 60 0 5946 141 20 12 chr4 25730478 25730498 -158558164 + L1MA6 LINE L1 5759 5777 -523 423 68 0 0 chr4 25730498 25730557 -158558105 + (CA)n Simple_repeat Simple_repeat 2 60 0 5946 141 20 12 chr4 25730557 25730765 -158557897 + L1MA6 LINE L1 5777 5982 -318 2155 114 51 17 chr4 25730765 25731117 -158557545 + THE1B LTR MaLR 1 364 0 5946 141 20 12 chr4 25731117 25731415 -158557247 + L1MA6 LINE L1 5982 6300 0 986 253 92 3 chr4 25731769 25731922 -158556740 - MER5C DNA MER1_type -2 322 184 1712 154 151 21 chr4 25731922 25732299 -158556363 - MSTA LTR MaLR 0 428 3 986 253 92 3 chr4 25732299 25732438 -158556224 - MER5C DNA MER1_type -140 184 4 1234 234 49 40 chr4 25732589 25732914 -158555748 + MLT1A2 LTR MaLR 47 374 0 3763 291 121 17 chr4 25733093 25734241 -158554421 - L2 LINE L2 -357 2957 1594 186 43 0 0 chr4 25734241 25734264 -158554398 + (ATG)n Simple_repeat Simple_repeat 1 23 0 3763 291 121 17 chr4 25734264 25734722 -158553940 - L2 LINE L2 -1720 1594 1185 4090 19 0 0 chr4 25734851 25735324 -158553338 + L1PA2 LINE L1 5677 6149 -6 212 197 14 84 chr4 25737081 25737152 -158551510 + MIR SINE MIR 64 129 -133 378 0 0 0 chr4 25737466 25737508 -158551154 + (TA)n Simple_repeat Simple_repeat 2 43 0 250 323 0 0 chr4 25737551 25737613 -158551049 + polypurine Low_complexity Low_complexity 6 67 0 237 226 57 0 chr4 25737692 25737745 -158550917 + MIR SINE MIR 118 173 -89 209 83 28 0 chr4 25737762 25737798 -158550864 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 494 257 9 0 chr4 25738267 25738380 -158550282 + MER81 DNA DNA 1 114 0 466 281 14 22 chr4 25738914 25739053 -158549609 - MER5A DNA MER1_type -6 183 46 200 360 27 0 chr4 25739078 25739153 -158549509 + MER5A DNA MER1_type 30 106 -83 472 308 154 4 chr4 25739261 25739488 -158549174 - MIR SINE MIR 0 262 2 326 237 40 0 chr4 25739883 25739959 -158548703 + MIR SINE MIR 114 192 -70 201 175 0 0 chr4 25740509 25740549 -158548113 + T-rich Low_complexity Low_complexity 1 40 0 505 291 216 0 chr4 25740701 25740900 -158547762 - MIR SINE MIR -5 257 16 206 367 13 0 chr4 25741764 25741843 -158546819 - MIR SINE MIR -74 188 109 216 417 27 16 chr4 25742491 25742678 -158545984 - MIR SINE MIR -42 220 32 201 245 20 0 chr4 25742719 25742768 -158545894 + CT-rich Low_complexity Low_complexity 5 54 0 182 93 0 70 chr4 25743420 25743463 -158545199 + (TGGA)n Simple_repeat Simple_repeat 1 40 0 457 208 21 83 chr4 25743498 25743642 -158545020 - L2 LINE L2 0 3313 3179 213 39 0 0 chr4 25743668 25743694 -158544968 + (TA)n Simple_repeat Simple_repeat 1 26 0 264 227 13 13 chr4 25743814 25743889 -158544773 - MLT1E2 LTR MaLR 0 626 552 922 238 47 101 chr4 25743890 25744188 -158544474 - MLT1D-int LTR MaLR -129 1242 961 3766 211 13 47 chr4 25744365 25745279 -158543383 - MLT1D-int LTR MaLR -487 884 2 2022 190 55 41 chr4 25745284 25745826 -158542836 + MER44D DNA MER2_type 1 605 0 1070 233 47 37 chr4 25745826 25746148 -158542514 - MLT1D LTR MaLR -2 503 179 568 178 75 0 chr4 25746196 25746303 -158542359 - MLT2C2 LTR ERVL -48 416 302 789 216 25 20 chr4 25746321 25746520 -158542142 + L1ME1 LINE L1 5682 5881 -285 17382 36 2 0 chr4 25746548 25749416 -158539246 - L1PA5 LINE L1 -4 6150 3270 1162 214 26 13 chr4 25749416 25749650 -158539012 - AluJb SINE Alu -54 258 22 1228 176 140 0 chr4 25749656 25749934 -158538728 - MLT2C2 LTR ERVL -147 317 1 1788 285 157 18 chr4 25749954 25750910 -158537752 - L2 LINE L2 -305 3008 1794 2548 55 0 7 chr4 25751879 25752188 -158536474 + AluY SINE Alu 1 307 -4 27 0 0 0 chr4 25752383 25752410 -158536252 + AT_rich Low_complexity Low_complexity 1 27 0 180 77 0 0 chr4 25752459 25752485 -158536177 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 353 251 73 78 chr4 25753578 25753797 -158534865 - MLT1J LTR MaLR -187 324 107 2496 54 0 0 chr4 25754141 25754437 -158534225 - AluY SINE Alu -11 300 5 22 94 0 0 chr4 25754576 25754640 -158534022 + AT_rich Low_complexity Low_complexity 1 64 0 396 0 0 0 chr4 25755397 25755441 -158533221 + (CA)n Simple_repeat Simple_repeat 2 45 0 302 252 87 68 chr4 25756402 25756505 -158532157 - L2 LINE L2 -20 3252 3148 628 261 102 31 chr4 25756527 25756753 -158531909 - MIR SINE MIR -6 256 15 484 316 45 11 chr4 25758301 25758478 -158530184 - MIR SINE MIR -32 230 48 1608 140 31 71 chr4 25758486 25758824 -158529838 - MER1B DNA MER1_type 0 339 13 265 174 196 54 chr4 25759169 25759261 -158529401 + MIR SINE MIR 1 105 -157 807 145 8 8 chr4 25759871 25760002 -158528660 - FLAM_C SINE Alu -12 131 1 441 0 0 0 chr4 25761183 25761232 -158527430 + (TA)n Simple_repeat Simple_repeat 2 50 0 466 266 102 53 chr4 25762481 25762725 -158525937 + MIR SINE MIR 2 257 -5 2039 153 34 3 chr4 25763598 25763952 -158524710 + L1MC1 LINE L1 5407 5771 -562 1454 163 20 0 chr4 25764052 25764303 -158524359 + L1MC1 LINE L1 6073 6328 -5 387 227 11 11 chr4 25765791 25765879 -158522783 + L2 LINE L2 3225 3312 -1 404 180 22 22 chr4 25766341 25766430 -158522232 + L2 LINE L2 3225 3313 0 1032 219 115 29 chr4 25766683 25767030 -158521632 - L1MB8 LINE L1 -6 6172 5796 1662 172 0 26 chr4 25767047 25767350 -158521312 - AluJo SINE Alu -17 295 1 27 0 0 0 chr4 25767899 25767926 -158520736 + AT_rich Low_complexity Low_complexity 1 27 0 2104 127 3 3 chr4 25768480 25768827 -158519835 - AluSg SINE Alu 0 347 1 334 329 86 44 chr4 25769174 25769536 -158519126 - L1MDa LINE L1 -4514 1615 1239 638 313 64 57 chr4 25769549 25770396 -158518266 - L1MDa LINE L1 -4885 1234 382 702 331 115 24 chr4 25771861 25772369 -158516293 + L2 LINE L2 2761 3313 0 2838 193 24 60 chr4 25773253 25773967 -158514695 - LTR8 LTR ERV1 0 691 4 510 275 89 40 chr4 25773976 25774223 -158514439 - MLT1H LTR MaLR -273 276 18 235 303 49 56 chr4 25774349 25774491 -158514171 - MER5A DNA MER1_type -1 188 48 24 53 0 0 chr4 25774621 25774659 -158514003 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr4 25774732 25774753 -158513909 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 25775018 25775046 -158513616 + AT_rich Low_complexity Low_complexity 1 28 0 2105 114 0 3 chr4 25775051 25775341 -158513321 + AluSg SINE Alu 15 303 -7 25 31 0 0 chr4 25776234 25776266 -158512396 + AT_rich Low_complexity Low_complexity 1 32 0 180 0 0 0 chr4 25776306 25776326 -158512336 + (TTCA)n Simple_repeat Simple_repeat 4 23 0 251 109 0 0 chr4 25777716 25777762 -158510900 - LTR66 LTR ERVL -171 439 394 327 315 194 17 chr4 25778430 25778880 -158509782 - L2 LINE L2 -5 3267 2734 206 0 69 0 chr4 25779159 25779188 -158509474 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 913 228 35 0 chr4 25779350 25779552 -158509110 + MER3 DNA MER1_type 1 209 0 5511 89 112 38 chr4 25779781 25780867 -158507795 - MER11A LTR ERVK 0 1266 1 870 242 49 14 chr4 25781000 25781223 -158507439 - MIR SINE MIR 0 262 32 183 197 213 0 chr4 25782671 25782732 -158505930 - MIR SINE MIR -55 207 134 628 194 146 24 chr4 25782747 25782912 -158505750 - MIR SINE MIR -62 200 16 2598 96 31 6 chr4 25783411 25783766 -158504896 - THE1B LTR MaLR 0 364 1 422 356 22 0 chr4 25783898 25784078 -158504584 + MIR SINE MIR 70 253 -9 2444 67 0 0 chr4 25787321 25787621 -158501041 - AluY SINE Alu -11 300 1 184 409 18 0 chr4 25788110 25788220 -158500442 + L2 LINE L2 3183 3294 -19 2778 172 26 26 chr4 25788495 25789002 -158499660 - MLT2B2 LTR ERVL -8 507 1 2313 159 20 34 chr4 25789359 25789799 -158498863 - Tigger2a DNA MER2_type 0 434 1 21 0 0 0 chr4 25790013 25790034 -158498628 + AT_rich Low_complexity Low_complexity 1 21 0 3359 149 6 11 chr4 25790700 25791229 -158497433 + MER1A DNA MER1_type 1 526 -1 278 374 57 0 chr4 25791358 25791481 -158497181 + L2 LINE L2 3139 3268 -4 1771 168 50 6 chr4 25792437 25792776 -158495886 - THE1A LTR MaLR -1 354 1 479 187 19 19 chr4 25792812 25792919 -158495743 - L1MB8 LINE L1 -5 6173 6067 1665 244 58 60 chr4 25793584 25794120 -158494542 + MER90 LTR ERV1 74 608 -6 186 292 0 56 chr4 25794142 25794214 -158494448 - L2 LINE L2 -74 3239 3172 260 365 161 13 chr4 25794360 25794837 -158493825 - L2 LINE L2 -360 2954 2407 276 341 49 16 chr4 25795401 25795524 -158493138 + MIR SINE MIR 17 143 -65 218 250 92 0 chr4 25795650 25795726 -158492936 + MIR SINE MIR 125 207 -55 21 36 0 0 chr4 25795915 25795943 -158492719 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr4 25796025 25796054 -158492608 + AT_rich Low_complexity Low_complexity 1 29 0 1124 113 0 0 chr4 25796233 25796411 -158492251 + AluSg/x SINE Alu 132 309 0 219 321 50 20 chr4 25796827 25796945 -158491717 + MIR SINE MIR 30 149 -65 785 296 14 0 chr4 25797999 25798219 -158490443 - MER58A DNA MER1_type -1 223 1 728 303 31 13 chr4 25798637 25798865 -158489797 + MIR SINE MIR 18 249 -13 347 74 37 0 chr4 25799415 25799469 -158489193 + (TTTC)n Simple_repeat Simple_repeat 4 59 0 262 111 37 0 chr4 25799475 25799529 -158489133 - AluJo SINE Alu 0 302 247 1097 156 22 11 chr4 25799529 25799581 -158489081 - AluJo SINE Alu -126 186 136 321 26 0 0 chr4 25799581 25799619 -158489043 + (TA)n Simple_repeat Simple_repeat 2 39 0 1097 156 22 11 chr4 25799619 25799746 -158488916 - AluJo SINE Alu -176 136 5 22 35 0 0 chr4 25799883 25799912 -158488750 + AT_rich Low_complexity Low_complexity 1 29 0 1163 218 51 25 chr4 25800570 25800845 -158487817 + AluJo SINE Alu 1 282 -30 189 0 0 0 chr4 25800848 25800869 -158487793 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 2022 120 3 7 chr4 25801945 25802228 -158486434 - AluSx SINE Alu -28 284 3 22 0 0 0 chr4 25802229 25802251 -158486411 + AT_rich Low_complexity Low_complexity 1 22 0 718 119 28 0 chr4 25802597 25802706 -158485956 - MLT1B LTR MaLR 0 390 279 785 233 0 0 chr4 25802820 25802966 -158485696 + MER58B DNA MER1_type 193 338 -3 2077 128 0 7 chr4 25802998 25803296 -158485366 + AluSx SINE Alu 1 296 -16 335 352 40 8 chr4 25805139 25805386 -158483276 - MER113 DNA MER1_type? -8 513 259 4155 105 12 2 chr4 25805462 25806064 -158482598 - L1MA1 LINE L1 -11 6291 5684 29 84 0 0 chr4 25806125 25806196 -158482466 + AT_rich Low_complexity Low_complexity 1 71 0 32 43 0 0 chr4 25807533 25807579 -158481083 + AT_rich Low_complexity Low_complexity 1 46 0 1321 234 123 37 chr4 25807899 25808371 -158480291 + MLT1F LTR MaLR 34 555 0 250 321 62 9 chr4 25808586 25808698 -158479964 - MIR SINE MIR -86 176 59 183 327 0 0 chr4 25808687 25808742 -158479920 - MIR SINE MIR -150 112 58 * 1493 92 0 10 chr4 25808754 25808961 -158479701 - L1PA7 LINE L1 -1 6153 5949 24 0 0 0 chr4 25810062 25810086 -158478576 + AT_rich Low_complexity Low_complexity 1 24 0 2440 45 0 3 chr4 25810094 25810385 -158478277 + AluY SINE Alu 1 290 -21 3036 14 0 0 chr4 25810468 25810815 -158477847 - L1PA2 LINE L1 -3 6152 5806 1274 181 17 0 chr4 25811419 25811651 -158477011 - Tigger2 DNA MER2_type 0 2718 2483 1296 173 114 0 chr4 25811651 25811888 -158476774 + AluJo SINE Alu 1 264 -48 225 132 0 0 chr4 25811896 25811934 -158476728 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 1031 174 42 14 chr4 25811934 25812147 -158476515 - Tigger2 DNA MER2_type -227 2491 2273 347 185 62 0 chr4 25812137 25812202 -158476460 - Tigger2 DNA MER2_type -2649 69 1 * 22 0 0 0 chr4 25812241 25812263 -158476399 + AT_rich Low_complexity Low_complexity 1 22 0 455 254 149 0 chr4 25812458 25812659 -158476003 - Charlie7 DNA MER1_type -257 2355 2125 2868 62 10 13 chr4 25812691 25813075 -158475587 - L1PA8A LINE L1 -13 6118 5736 309 273 91 32 chr4 25815928 25816082 -158472580 - MIR SINE MIR -13 249 87 357 358 16 0 chr4 25816363 25816486 -158472176 - MIR SINE MIR -132 130 6 2020 130 3 16 chr4 25816802 25817110 -158471552 + AluSx SINE Alu 2 305 -7 231 320 31 31 chr4 25817123 25817220 -158471442 + MIR SINE MIR 47 143 -119 2951 160 198 49 chr4 25819485 25820204 -158468458 - LTR1B LTR ERV1 0 826 1 211 301 106 26 chr4 25821193 25821306 -158467356 - MIR3 SINE MIR -45 163 42 189 277 138 21 chr4 25822147 25822241 -158466421 - MIR3 SINE MIR -3 205 101 1991 117 46 0 chr4 25822349 25822630 -158466032 + AluSg SINE Alu 1 294 -16 261 0 0 0 chr4 25822642 25822671 -158465991 + (ATGTG)n Simple_repeat Simple_repeat 2 30 0 2305 95 0 0 chr4 25822912 25823208 -158465454 + AluSc SINE Alu 1 296 -13 209 257 218 0 chr4 25823522 25823623 -158465039 - MIR SINE MIR -21 241 119 233 261 49 103 chr4 25823972 25824156 -158464506 - L2 LINE L2 -196 3076 2903 2580 182 9 6 chr4 25824595 25825061 -158463601 + MLT1C LTR MaLR 1 467 0 194 256 0 0 chr4 25825293 25825336 -158463326 - L2 LINE L2 -2 3311 3269 2507 68 0 3 chr4 25826100 25826408 -158462254 - AluY SINE Alu -4 307 1 285 313 50 0 chr4 25826421 25826501 -158462161 - L2 LINE L2 -15 3257 3174 313 361 42 42 chr4 25826585 25826729 -158461933 - MER91A DNA MER1_type -25 171 28 489 305 115 40 chr4 25827186 25827412 -158461250 + MIR SINE MIR 20 262 0 473 313 91 14 chr4 25827633 25827841 -158460821 - MIR SINE MIR -32 230 7 196 175 32 0 chr4 25829128 25829191 -158459471 + (TA)n Simple_repeat Simple_repeat 1 65 0 325 325 0 0 chr4 25829214 25829297 -158459365 - MIR SINE MIR -151 111 29 1899 234 153 93 chr4 25829798 25830413 -158458249 + MLT1E3 LTR MaLR 1 622 -2 202 273 0 18 chr4 25831484 25831539 -158457123 - L3 LINE CR1 -115 1462 1409 24 67 0 0 chr4 25832648 25832693 -158455969 + AT_rich Low_complexity Low_complexity 1 45 0 197 288 0 27 chr4 25833718 25833791 -158454871 - L2 LINE L2 -184 3088 3018 742 276 41 0 chr4 25834433 25834629 -158454033 + MIR SINE MIR 7 210 -52 1786 211 37 14 chr4 25835839 25835853 -158452809 - MLT2D LTR ERVL -27 437 425 528 59 59 0 chr4 25835853 25835955 -158452707 + (TCTA)n Simple_repeat Simple_repeat 3 110 0 1786 211 37 14 chr4 25835955 25836307 -158452355 - MLT2D LTR ERVL -39 425 3 6127 186 32 16 chr4 25836309 25837482 -158451180 - ERVL-D LTR ERVL -7 5757 4566 * 8969 184 42 10 chr4 25837480 25839126 -158449536 - ERVL LTR ERVL -1063 4701 3003 2895 210 42 11 chr4 25839115 25839179 -158449483 + ERVL LTR ERVL 1112 1173 -4591 * 267 31 0 0 chr4 25839179 25839211 -158449451 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 2895 210 42 11 chr4 25839211 25839770 -158448892 + ERVL LTR ERVL 1173 1754 -4010 1084 215 152 4 chr4 25839759 25839996 -158448666 + ERVL LTR ERVL 1908 2179 -3585 * 21 57 0 0 chr4 25840350 25840385 -158448277 + AT_rich Low_complexity Low_complexity 1 35 0 617 295 8 60 chr4 25841882 25842015 -158446647 + MIR SINE MIR 1 116 -146 2044 136 0 13 chr4 25842015 25842323 -158446339 - AluSq SINE Alu -9 304 1 617 295 8 60 chr4 25842323 25842440 -158446222 + MIR SINE MIR 116 238 -24 276 274 85 114 chr4 25842463 25842664 -158445998 + MIR SINE MIR 52 246 -16 344 304 26 9 chr4 25842666 25842781 -158445881 - MER8 DNA MER2_type -122 117 1 7265 19 0 1 chr4 25843520 25844361 -158444301 - L1PA2 LINE L1 -4 6151 5312 324 314 25 25 chr4 25845273 25845391 -158443271 + MIR3 SINE MIR 85 202 -6 216 0 0 0 chr4 25845572 25845596 -158443066 + (T)n Simple_repeat Simple_repeat 1 24 0 984 273 52 17 chr4 25845680 25846024 -158442638 + Charlie1b DNA MER1_type 1 356 -167 255 322 34 34 chr4 25846218 25846336 -158442326 + MIR3 SINE MIR 85 202 -6 207 0 0 0 chr4 25846518 25846541 -158442121 + (T)n Simple_repeat Simple_repeat 1 23 0 1630 232 58 12 chr4 25846625 25847125 -158441537 + Charlie1b DNA MER1_type 1 523 0 491 376 15 18 chr4 25847247 25847521 -158441141 - MLT1J1 LTR MaLR -173 273 1 201 336 62 26 chr4 25847539 25847652 -158441010 + MIR SINE MIR 66 182 -80 1784 116 20 58 chr4 25848240 25848534 -158440128 + AluSq SINE Alu 1 283 -30 337 296 68 12 chr4 25849496 25849658 -158439004 - L2 LINE L2 0 3313 3143 345 327 122 5 chr4 25850368 25850573 -158438089 - L2 LINE L2 -213 3059 2831 22 0 0 0 chr4 25851604 25851626 -158437036 + AT_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chr4 25852077 25852107 -158436555 + AT_rich Low_complexity Low_complexity 1 30 0 6387 24 0 7 chr4 25853039 25854358 -158434304 + L1PA3 LINE L1 4694 6003 -152 752 214 41 81 chr4 25854514 25854784 -158433878 + MLT2B1 LTR ERVL 229 408 -6 429 317 150 25 chr4 25854981 25855549 -158433113 + L1M4 LINE L1 3796 4434 -1712 11991 40 16 0 chr4 25855723 25857205 -158431457 + L1P LINE L1 3745 5249 -897 1269 224 48 107 chr4 25857433 25858006 -158430656 - MER77 LTR ERV1 -5 600 89 1786 179 51 14 chr4 25858253 25858604 -158430058 - MLT1A1 LTR MaLR -1 364 1 229 221 208 13 chr4 25858672 25858749 -158429913 + MIR SINE MIR 2 93 -169 208 163 47 23 chr4 25858821 25858864 -158429798 + MER5B DNA MER1_type 18 61 -117 259 243 27 0 chr4 25858880 25858954 -158429708 - LTR67 LTR ERVL -7 550 475 198 370 37 37 chr4 25860098 25860233 -158428429 - L2 LINE L2 -1322 1992 1858 1792 206 73 67 chr4 25860336 25860439 -158428223 - L1MC3 LINE L1 -315 7470 7369 183 80 0 0 chr4 25860439 25860464 -158428198 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 1792 206 73 67 chr4 25860464 25861000 -158427662 - L1MC3 LINE L1 -416 7369 6827 644 221 32 0 chr4 25861013 25861171 -158427491 - L1MC3 LINE L1 -1855 5930 5768 * 3454 268 41 17 chr4 25861160 25862480 -158426182 - L1MC3 LINE L1 -1640 4506 3155 247 250 0 0 chr4 25864489 25864553 -158424109 + L1ME2 LINE L1 5803 5866 -300 439 221 35 62 chr4 25864577 25864722 -158423940 + L1ME2 LINE L1 5967 6107 -57 243 324 63 18 chr4 25865072 25865183 -158423479 + MIR SINE MIR 23 138 -70 298 264 28 2 chr4 25866328 25866442 -158422220 - MIR SINE MIR -63 145 38 24698 84 27 12 chr4 25866987 25870588 -158418074 - L1P LINE L1 -1335 4811 1158 2093 136 0 7 chr4 25870932 25871242 -158417420 + AluSx SINE Alu 1 308 -4 855 227 153 50 chr4 25871249 25871570 -158417092 + MER93b LTR ERV1 20 373 0 22 35 0 0 chr4 25872030 25872059 -158416603 + AT_rich Low_complexity Low_complexity 1 29 0 301 266 7 79 chr4 25872290 25872429 -158416233 - MIR SINE MIR -4 258 130 18671 53 55 2 chr4 25873765 25876205 -158412457 - L1P LINE L1 -3574 2572 2 1634 264 38 13 chr4 25876211 25876662 -158412000 + MER21B LTR ERV1 257 718 -145 2078 181 53 0 chr4 25878092 25878544 -158410118 - L1 LINE L1 -1553 4593 4118 1328 194 8 0 chr4 25878551 25878788 -158409874 - L1MC1 LINE L1 -50 6283 6045 21 82 0 0 chr4 25878789 25878838 -158409824 + AT_rich Low_complexity Low_complexity 1 49 0 702 265 73 66 chr4 25878892 25879288 -158409374 - L1ME LINE L1 -339 5782 5384 225 262 180 70 chr4 25879885 25880141 -158408521 + L2 LINE L2 2040 2323 -991 1059 235 53 15 chr4 25880426 25880766 -158407896 - L1ME LINE L1 -1750 4396 4044 191 260 20 0 chr4 25880768 25880818 -158407844 + L2 LINE L2 3220 3270 -2 362 257 194 29 chr4 25881004 25881179 -158407483 - MIR SINE MIR -1 261 58 2195 100 3 0 chr4 25881340 25881639 -158407023 + AluSg SINE Alu 1 300 -10 302 289 62 0 chr4 25881994 25882091 -158406571 + MIR SINE MIR 132 234 -28 259 307 31 16 chr4 25882385 25882512 -158406150 + L1MC/D LINE L1 5705 5835 -286 322 169 36 0 chr4 25882583 25882666 -158405996 + CT-rich Low_complexity Low_complexity 3 88 0 225 121 0 0 chr4 25882896 25882929 -158405733 + MLT1G1 LTR MaLR 1 33 -562 1593 259 204 2 chr4 25883002 25883497 -158405165 + MLT1G1 LTR MaLR 1 595 0 538 303 45 11 chr4 25883693 25883871 -158404791 - MIR SINE MIR -31 231 48 352 170 19 9 chr4 25884307 25884413 -158404249 + (TCTA)n Simple_repeat Simple_repeat 4 110 0 185 343 58 7 chr4 25885421 25885558 -158403104 + L2 LINE L2 2539 2682 -632 538 283 194 5 chr4 25885746 25885937 -158402725 + MLT1H LTR MaLR 1 227 -322 33 43 0 0 chr4 25886893 25886940 -158401722 + AT_rich Low_complexity Low_complexity 1 47 0 345 260 40 0 chr4 25886951 25887051 -158401611 + L1MC4a LINE L1 7354 7457 -351 506 206 69 74 chr4 25887054 25887243 -158401419 + L1MC4 LINE L1 7616 7803 -239 22 0 0 0 chr4 25887371 25887393 -158401269 + AT_rich Low_complexity Low_complexity 1 22 0 386 22 0 0 chr4 25887495 25887541 -158401121 + L1PA4 LINE L1 6012 6057 -98 415 231 64 13 chr4 25887646 25887862 -158400800 + L1M1 LINE L1 3361 3593 -3972 7206 193 35 70 chr4 25887864 25888390 -158400272 + L1M1 LINE L1 3424 3967 -3598 1808 137 20 17 chr4 25888390 25888690 -158399972 + AluSx SINE Alu 1 301 -11 7206 193 35 70 chr4 25888690 25890343 -158398319 + L1M1 LINE L1 3967 5532 -2033 14398 32 1 0 chr4 25890583 25893074 -158395588 - L1PA3 LINE L1 0 6155 3664 261 268 51 85 chr4 25893320 25893555 -158395107 + L1ME2 LINE L1 5349 5575 -589 235 292 137 15 chr4 25893675 25894011 -158394651 + L1ME2 LINE L1 5610 5980 -184 2496 57 3 0 chr4 25894913 25895209 -158393453 - AluY SINE Alu -6 305 9 21 0 0 0 chr4 25895650 25895671 -158392991 + AT_rich Low_complexity Low_complexity 1 21 0 24 85 0 0 chr4 25896809 25896868 -158391794 + AT_rich Low_complexity Low_complexity 1 59 0 2045 118 7 10 chr4 25897095 25897384 -158391278 + AluSp SINE Alu 14 301 -12 237 266 25 13 chr4 25898476 25898555 -158390107 + LTR67 LTR ERVL 461 540 -17 32 26 0 0 chr4 25898687 25898726 -158389936 + AT_rich Low_complexity Low_complexity 1 39 0 475 369 24 10 chr4 25898876 25899082 -158389580 - L3 LINE CR1 -23 1554 1346 3624 236 65 11 chr4 25899352 25900440 -158388222 - L1M4c LINE L1 -1433 4949 3803 * 4668 191 62 42 chr4 25900430 25901837 -158386825 - L1M4c LINE L1 -2969 3413 1934 1792 191 21 9 chr4 25901837 25902177 -158386485 + MER2 DNA MER2_type 1 344 0 4668 191 62 42 chr4 25902177 25902664 -158385998 - L1M4c LINE L1 -4448 1934 1458 42292 54 4 2 chr4 25902666 25908810 -158379852 + L1PA4 LINE L1 2 6151 -4 6746 175 73 10 chr4 25908823 25910170 -158378492 - L1M4c LINE L1 -4933 1451 19 1883 199 27 62 chr4 25910679 25911197 -158377465 - MLT1D LTR MaLR -5 500 1 23 0 0 0 chr4 25911474 25911497 -158377165 + AT_rich Low_complexity Low_complexity 1 23 0 1155 312 78 5 chr4 25911593 25911990 -158376672 + LTR16A LTR ERVL 25 450 0 3368 215 146 63 chr4 25912193 25913516 -158375146 - L1MC4a LINE L1 -20 7788 6356 207 0 0 0 chr4 25914696 25914719 -158373943 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 293 401 22 6 chr4 25915085 25915267 -158373395 - MIR3 SINE MIR -7 201 17 21 57 0 0 chr4 25915470 25915505 -158373157 + AT_rich Low_complexity Low_complexity 1 35 0 1165 308 84 47 chr4 25916132 25917213 -158371449 - L2 LINE L2 -8 3305 2193 278 50 25 0 chr4 25917467 25917507 -158371155 + (TTA)n Simple_repeat Simple_repeat 2 42 0 941 187 73 45 chr4 25920487 25920776 -158367886 - L1MC3 LINE L1 -14 7771 7475 258 244 39 0 chr4 25920836 25920914 -158367748 + MER117 DNA MER1_type 7 87 -110 22 80 0 0 chr4 25921007 25921057 -158367605 + AT_rich Low_complexity Low_complexity 1 50 0 2331 209 58 62 chr4 25922045 25922661 -158366001 + MLT1E2 LTR MaLR 1 614 -12 236 296 0 0 chr4 25923416 25923470 -158365192 + L2 LINE L2 3235 3288 -25 261 0 0 0 chr4 25925349 25925378 -158363284 + (TC)n Simple_repeat Simple_repeat 2 30 0 358 297 102 0 chr4 25925422 25925540 -158363122 - L2 LINE L2 -38 3275 3146 2152 92 4 0 chr4 25925752 25926065 -158362597 + AluSq SINE Alu 1 314 0 1705 200 32 109 chr4 25926192 25926561 -158362101 - MLT1F LTR MaLR 0 542 233 243 61 0 0 chr4 25926561 25926594 -158362068 + (CA)n Simple_repeat Simple_repeat 2 34 0 1705 200 32 109 chr4 25926594 25926809 -158361853 - MLT1F LTR MaLR -309 233 3 195 383 37 0 chr4 25928019 25928100 -158360562 - MIR SINE MIR -104 104 21 555 325 44 27 chr4 25931164 25931462 -158357200 - MLT1J LTR MaLR -45 466 164 855 289 50 42 chr4 25931462 25931813 -158356849 - LTR16C LTR ERVL 0 473 136 1446 108 0 10 chr4 25932461 25932655 -158356007 + AluSq SINE Alu 99 290 -23 1167 275 27 25 chr4 25933150 25933557 -158355105 + MLT1I LTR MaLR 1 408 -1 432 118 0 0 chr4 25934020 25934088 -158354574 + (TTCC)n Simple_repeat Simple_repeat 1 68 0 1601 202 10 19 chr4 25934240 25934552 -158354110 + AluJb SINE Alu 3 311 -1 188 316 118 0 chr4 25935939 25936015 -158352647 + MIR3 SINE MIR 72 156 -52 1364 221 148 74 chr4 25937189 25937248 -158351414 - MLT1E2 LTR MaLR 0 626 573 1692 180 3 10 chr4 25937248 25937537 -158351125 + AluJb SINE Alu 1 287 -25 231 36 0 0 chr4 25937537 25937565 -158351097 + (TA)n Simple_repeat Simple_repeat 2 29 0 1364 221 148 74 chr4 25937565 25938087 -158350575 - MLT1E2 LTR MaLR -52 574 1 270 327 30 0 chr4 25938432 25938533 -158350129 - MIR SINE MIR -21 241 138 2007 114 0 4 chr4 25938911 25939183 -158349479 - AluSx SINE Alu -20 292 22 21 0 0 0 chr4 25939292 25939313 -158349349 + AT_rich Low_complexity Low_complexity 1 21 0 180 313 21 0 chr4 25939438 25939486 -158349176 + L2 LINE L2 3214 3262 -10 2034 151 7 0 chr4 25939560 25939865 -158348797 + AluSx SINE Alu 1 307 -5 359 258 119 25 chr4 25940537 25940696 -158347966 - MIR SINE MIR -66 196 23 1933 297 66 3 chr4 25941894 25942543 -158346119 + MER69 DNA AcHobo 1 690 -536 1478 233 94 36 chr4 25942545 25943258 -158345404 + MER69 DNA AcHobo 1769 2522 -4 323 317 146 45 chr4 25943460 25943706 -158344956 - MLT1K LTR MaLR -308 280 10 217 327 105 20 chr4 25944063 25944216 -158344446 - MIR SINE MIR -45 217 52 1822 109 0 90 chr4 25945891 25946235 -158342427 - AluSx SINE Alu 0 316 1 915 232 14 0 chr4 25946322 25946542 -158342120 + L1MC1 LINE L1 6106 6328 -5 306 315 167 22 chr4 25946653 25946923 -158341739 + L1M4 LINE L1 2942 3250 -2896 * 392 353 80 29 chr4 25946911 25947186 -158341476 - HAL1b LINE L1 -676 672 384 25 31 0 0 chr4 25947686 25947718 -158340944 + AT_rich Low_complexity Low_complexity 1 32 0 282 121 45 15 chr4 25948718 25948784 -158339878 + CT-rich Low_complexity Low_complexity 4 71 0 991 160 12 0 chr4 25949069 25949238 -158339424 + MER5A DNA MER1_type 14 184 -5 1662 132 0 11 chr4 25949259 25949532 -158339130 + L1MA5 LINE L1 6024 6293 -7 210 309 101 50 chr4 25949746 25949885 -158338777 - L2 LINE L2 -108 3164 3019 370 327 33 33 chr4 25950764 25950978 -158337684 - MIR SINE MIR -34 228 15 633 110 0 0 chr4 25952756 25952847 -158335815 - FRAM SINE Alu -13 163 73 1768 170 3 14 chr4 25952951 25953245 -158335417 - AluJo SINE Alu -21 291 1 1270 197 39 36 chr4 25955576 25955906 -158332756 + MLT1A1 LTR MaLR 1 331 -34 22229 71 8 8 chr4 25956008 25960026 -158328636 + L1PA6 LINE L1 2144 6156 0 234 333 60 18 chr4 25960135 25960303 -158328359 - MARNA DNA Mariner 0 586 412 40290 52 7 2 chr4 25960914 25967026 -158321636 + L1PA4 LINE L1 11 6155 0 180 298 0 21 chr4 25967027 25967074 -158321588 + MIR SINE MIR 23 68 -194 1969 162 98 0 chr4 25967074 25967482 -158321180 + L1PA16 LINE L1 5707 6154 -12 208 118 20 39 chr4 25967785 25967836 -158320826 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 199 257 71 14 chr4 25967836 25967906 -158320756 + MIR SINE MIR 74 147 -115 218 254 132 44 chr4 25968021 25968135 -158320527 + MIR SINE MIR 116 239 -23 324 243 9 27 chr4 25969298 25969409 -158319253 - MLT1K LTR MaLR -29 559 451 352 345 53 23 chr4 25969539 25969710 -158318952 - MER5B DNA MER1_type -2 176 1 2288 167 14 9 chr4 25969753 25970183 -158318479 - L1PA16 LINE L1 0 6166 5735 220 333 0 0 chr4 25971688 25971745 -158316917 - L2 LINE L2 -18 3254 3198 370 320 23 8 chr4 25971762 25971890 -158316772 + MIR SINE MIR 12 141 -121 329 115 0 0 chr4 25972069 25972121 -158316541 - LTR33A LTR ERVL -33 490 439 253 192 82 27 chr4 25972501 25972574 -158316088 - LTR50 LTR ERVL -702 93 17 198 0 0 0 chr4 25973091 25973113 -158315549 + (CTTAG)n Simple_repeat Simple_repeat 4 25 0 212 360 137 24 chr4 25973444 25973655 -158315007 + L2 LINE L2 2434 2668 -646 227 203 16 31 chr4 25973965 25974029 -158314633 - MLT1I LTR MaLR -2 407 345 189 0 0 0 chr4 25976244 25976265 -158312397 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 203 204 91 0 chr4 25976282 25976326 -158312336 + L2 LINE L2 3266 3313 0 286 333 163 0 chr4 25976502 25976625 -158312037 + L2 LINE L2 3122 3264 -8 243 338 35 14 chr4 25977128 25977273 -158311389 + L2 LINE L2 3118 3265 -48 186 43 0 0 chr4 25977274 25977297 -158311365 + (TGAA)n Simple_repeat Simple_repeat 2 24 0 261 327 63 10 chr4 25977313 25977444 -158311218 + MIR SINE MIR 3 141 -67 1754 163 21 0 chr4 25977535 25977698 -158310964 - AluSx SINE Alu -17 295 122 198 0 0 0 chr4 25977698 25977720 -158310942 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1754 163 21 0 chr4 25977720 25977845 -158310817 - AluSx SINE Alu -190 122 1 234 288 99 36 chr4 25978453 25978564 -158310098 - MIR SINE MIR -65 197 80 749 265 5 0 chr4 25978909 25979105 -158309557 - L1 LINE L1 -1153 4993 4797 1028 228 0 0 chr4 25979105 25979355 -158309307 + L1PB1 LINE L1 5085 5334 -812 5113 112 19 2 chr4 25979423 25980225 -158308437 + L1PB1 LINE L1 5336 6150 -1 299 305 85 8 chr4 25980587 25980705 -158307957 - MIR SINE MIR -12 250 124 793 158 0 158 chr4 25980716 25980912 -158307750 + AluJb SINE Alu 137 301 -11 1527 187 54 83 chr4 25982619 25983100 -158305562 - MLT1C LTR MaLR 0 467 1 502 301 81 25 chr4 25985031 25985267 -158303395 + MIR SINE MIR 14 262 0 1328 111 9 18 chr4 25985400 25985625 -158303037 + L1MA6 LINE L1 5372 5594 -706 521 105 12 0 chr4 25985725 25985811 -158302851 + L1MA6 LINE L1 5553 5639 -661 953 156 6 11 chr4 25985868 25986048 -158302614 + L1MA6 LINE L1 5620 5798 -502 207 200 0 0 chr4 25986048 25986083 -158302579 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 2783 152 19 12 chr4 25986083 25986598 -158302064 + L1MA6 LINE L1 5781 6299 -1 306 231 154 63 chr4 25987187 25987330 -158301332 - MER5A DNA MER1_type -1 188 33 2143 128 3 0 chr4 25987674 25987970 -158300692 + AluSx SINE Alu 1 297 -15 23975 65 8 0 chr4 25987971 25991224 -158297438 + L1P LINE L1 3 3282 -2864 854 200 0 54 chr4 25991380 25991565 -158297097 - FAM SINE Alu 0 175 1 1895 175 0 3 chr4 25991579 25991888 -158296774 - AluJo SINE Alu -4 308 1 1503 259 81 39 chr4 25991890 25992901 -158295761 - L1M4 LINE L1 -743 5639 4613 2005 61 4 29 chr4 25992913 25993192 -158295470 + L1PA8 LINE L1 5892 6163 -9 379 299 91 8 chr4 25993240 25993504 -158295158 - L1M4 LINE L1 -4919 1465 1180 296 294 34 34 chr4 25993520 25993685 -158294977 - MIR SINE MIR -43 219 60 4339 154 11 9 chr4 25994020 25995012 -158293650 - L1MA5A LINE L1 -265 6032 5039 484 280 8 0 chr4 25995099 25995231 -158293431 + MLT1H LTR MaLR 1 133 -416 23902 46 9 1 chr4 25995815 25999744 -158288918 + L1PA4 LINE L1 2200 6155 0 1895 155 38 18 chr4 25999751 26000151 -158288511 - L1MA4 LINE L1 -5 6295 5888 184 328 97 59 chr4 26000151 26000389 -158288273 + L2 LINE L2 2977 3223 -49 186 163 41 41 chr4 26000433 26000482 -158288180 - L3b LINE CR1 -251 1332 1284 2603 159 24 32 chr4 26002018 26002556 -158286106 - MER41B LTR ERV1 -11 599 103 301 89 0 0 chr4 26002605 26002650 -158286012 - MADE1 DNA Mariner 0 80 36 2703 297 52 10 chr4 26002684 26003623 -158285039 - L2 LINE L2 -299 3014 2035 9961 130 128 21 chr4 26003623 26005560 -158283102 + L1P LINE L1 13 2156 -3990 2288 86 0 10 chr4 26005852 26006153 -158282509 - AluSc SINE Alu -11 298 1 1536 231 77 28 chr4 26006360 26006896 -158281766 - L1ME1 LINE L1 -5 6230 5669 1594 183 10 10 chr4 26006918 26007151 -158281511 - MLT1C LTR MaLR -46 421 186 2144 125 10 3 chr4 26007151 26007462 -158281200 - AluSq SINE Alu 0 313 1 1594 183 10 10 chr4 26007462 26007539 -158281123 - MLT1C LTR MaLR -280 187 111 5632 246 86 48 chr4 26007541 26007697 -158280965 - L1ME1 LINE L1 -564 5671 5522 2317 80 0 13 chr4 26007697 26007998 -158280664 + AluY SINE Alu 1 297 -14 5632 246 86 48 chr4 26007998 26008325 -158280337 - L1ME1 LINE L1 -713 5522 5209 1094 219 39 108 chr4 26008325 26008740 -158279922 - MLT1B LTR MaLR -4 386 1 5632 246 86 48 chr4 26008740 26011370 -158277292 - L1ME1 LINE L1 -1026 5209 2424 1663 145 67 7 chr4 26011370 26011652 -158277010 + AluJb SINE Alu 1 299 -13 5632 246 86 48 chr4 26011652 26012050 -158276612 - L1ME1 LINE L1 -3811 2424 2043 1149 279 83 10 chr4 26012205 26012786 -158275876 - L1ME1 LINE L1 -4578 1818 1196 2547 252 88 14 chr4 26012817 26013790 -158274872 - L1ME1 LINE L1 -5316 1080 36 310 348 65 68 chr4 26013797 26014122 -158274540 + L2 LINE L2 2913 3236 -36 575 265 122 11 chr4 26015011 26015200 -158273462 - MER63A DNA MER1_type 0 210 1 685 311 121 5 chr4 26015310 26015725 -158272937 + LTR33A LTR ERVL 61 523 0 414 249 141 23 chr4 26016702 26016879 -158271783 + L2 LINE L2 3115 3312 -1 322 322 8 33 chr4 26017227 26017348 -158271314 + MIR SINE MIR 47 164 -98 7112 206 39 33 chr4 26018234 26020524 -158268138 - L1MA9 LINE L1 -39 6273 3960 2588 152 12 2 chr4 26020524 26020952 -158267710 - MSTB1 LTR MaLR 0 432 1 7112 206 39 33 chr4 26020952 26021467 -158267195 - L1MA9 LINE L1 -2352 3960 3450 287 296 34 4 chr4 26021467 26021658 -158267004 - MLT1I LTR MaLR -73 336 75 308 261 48 76 chr4 26021874 26022086 -158266576 - MER63 DNA MER1_type 0 1688 1 319 285 70 58 chr4 26023419 26023591 -158265071 - MIR3 SINE MIR -10 198 25 265 301 129 49 chr4 26023930 26024093 -158264569 - MIR SINE MIR -70 192 19 219 114 0 0 chr4 26024784 26024819 -158263843 + (TG)n Simple_repeat Simple_repeat 2 36 0 357 313 121 28 chr4 26025568 26025817 -158262845 + L2 LINE L2 3040 3311 -2 2023 203 27 11 chr4 26026642 26026834 -158261828 + MLT2B1 LTR ERVL 1 188 -332 183 80 0 0 chr4 26026834 26026859 -158261803 + (CAA)n Simple_repeat Simple_repeat 3 27 0 2023 203 27 11 chr4 26026859 26027104 -158261558 + MLT2B1 LTR ERVL 188 445 -75 517 226 0 20 chr4 26028481 26028583 -158260079 + FAM SINE Alu 1 100 -85 1506 152 0 0 chr4 26028608 26028864 -158259798 + Tigger4(Zombi) DNA MER2_type 2476 2731 0 567 322 29 37 chr4 26031690 26031935 -158256727 - MIR SINE MIR 0 262 20 26 30 0 0 chr4 26032118 26032151 -158256511 + AT_rich Low_complexity Low_complexity 1 33 0 1376 187 3 78 chr4 26032619 26032940 -158255722 - AluJb SINE Alu -15 297 1 1398 238 0 13 chr4 26033585 26033892 -158254770 - AluJo SINE Alu -9 303 1 2454 132 3 6 chr4 26033913 26034278 -158254384 - THE1B LTR MaLR 0 364 1 9574 116 19 4 chr4 26034278 26035781 -158252881 - THE1B-int LTR MaLR 0 1580 1 2057 150 34 6 chr4 26035781 26036135 -158252527 - THE1B LTR MaLR 0 364 1 258 386 63 48 chr4 26036158 26036554 -158252108 - L3 LINE CR1 -17 1560 1159 1653 107 0 9 chr4 26036714 26036939 -158251723 + AluSg/x SINE Alu 82 304 -8 702 334 139 23 chr4 26037217 26037909 -158250753 - L3 LINE CR1 -436 1141 370 850 142 29 30 chr4 26037912 26038367 -158250295 + GA-rich Low_complexity Low_complexity 1 454 0 215 189 0 0 chr4 26039080 26039117 -158249545 - MIR SINE MIR -116 146 110 187 278 83 14 chr4 26039233 26039305 -158249357 - MIR SINE MIR -179 83 7 291 310 11 0 chr4 26040444 26040531 -158248131 - L2 LINE L2 0 3313 3226 260 392 42 12 chr4 26040618 26040784 -158247878 - L2 LINE L2 -270 3043 2873 26 50 0 0 chr4 26040809 26040849 -158247813 + AT_rich Low_complexity Low_complexity 1 40 0 2197 100 3 0 chr4 26041120 26041410 -158247252 - AluSc SINE Alu -1 308 18 202 384 80 0 chr4 26041421 26041533 -158247129 - L2 LINE L2 -2 3311 3191 1731 260 35 12 chr4 26042149 26042637 -158246025 + LTR26 LTR ERV1 105 603 0 180 408 79 7 chr4 26042800 26042952 -158245710 + L2 LINE L2 3110 3272 0 509 278 111 5 chr4 26043840 26044056 -158244606 + L1ME LINE L1 5501 5739 -382 295 89 36 0 chr4 26044453 26044509 -158244153 + (TG)n Simple_repeat Simple_repeat 2 59 0 2242 114 7 3 chr4 26044757 26045065 -158243597 + AluSx SINE Alu 3 311 -1 376 129 97 0 chr4 26045065 26045189 -158243473 + GA-rich Low_complexity Low_complexity 2 137 0 249 250 0 0 chr4 26045517 26045573 -158243089 + CT-rich Low_complexity Low_complexity 1 56 0 386 170 184 27 chr4 26045594 26045741 -158242921 - L1MC5 LINE L1 -492 7469 7300 670 270 23 80 chr4 26045888 26046366 -158242296 - L1MC5 LINE L1 -727 7234 6784 467 235 28 62 chr4 26046422 26046601 -158242061 - L1MC5 LINE L1 -1178 6783 6611 215 119 0 104 chr4 26046920 26046987 -158241675 + (TTTTA)n Simple_repeat Simple_repeat 5 64 0 300 302 15 19 chr4 26047334 26047539 -158241123 + L1M4 LINE L1 3003 3206 -2940 1236 209 19 22 chr4 26047583 26047904 -158240758 + L1MC3 LINE L1 7460 7779 -6 233 255 0 0 chr4 26047917 26047964 -158240698 + (TG)n Simple_repeat Simple_repeat 2 48 0 1612 227 47 70 chr4 26047985 26048558 -158240104 - MER68 LTR ERV1 -2 560 1 1846 160 8 50 chr4 26048647 26049029 -158239633 + MLT2D LTR ERVL 1 366 -48 303 71 0 0 chr4 26049036 26049078 -158239584 + (TA)n Simple_repeat Simple_repeat 1 42 0 * 333 0 0 0 chr4 26049077 26049114 -158239548 + (GA)n Simple_repeat Simple_repeat 2 38 0 343 258 53 58 chr4 26049154 26049344 -158239318 - L1MC5 LINE L1 -1999 5809 5621 2039 144 0 7 chr4 26050245 26050573 -158238089 + AluSx SINE Alu 1 312 0 274 238 0 100 chr4 26050576 26050656 -158238006 + L2 LINE L2 3192 3263 -50 656 325 42 34 chr4 26051920 26052277 -158236385 + L2 LINE L2 2346 2705 -609 2692 137 67 2 chr4 26052280 26052725 -158235937 - L1PA16 LINE L1 -23 6143 5670 210 214 0 0 chr4 26052996 26053038 -158235624 + L2 LINE L2 2914 2955 -317 1354 226 45 23 chr4 26053327 26053726 -158234936 - L1MA9 LINE L1 -38 6274 5867 241 229 0 0 chr4 26054474 26054522 -158234140 + GA-rich Low_complexity Low_complexity 2 49 0 1438 185 3 63 chr4 26055131 26055450 -158233212 - AluJo SINE Alu -12 300 1 228 210 16 16 chr4 26055996 26056058 -158232604 + GA-rich Low_complexity Low_complexity 3 64 0 329 221 116 12 chr4 26056830 26056916 -158231746 - MIR3 SINE MIR -6 202 108 227 328 88 0 chr4 26057347 26057472 -158231190 - L3 LINE CR1 -45 1532 1397 359 188 12 0 chr4 26057479 26057559 -158231103 + L1MA8 LINE L1 6208 6288 -3 1671 184 14 3 chr4 26057624 26057918 -158230744 - AluJb SINE Alu 0 312 16 1105 294 172 24 chr4 26057919 26058575 -158230087 - L3 LINE CR1 -276 1301 549 28 0 0 0 chr4 26059169 26059197 -158229465 + AT_rich Low_complexity Low_complexity 1 28 0 603 168 18 0 chr4 26059213 26059380 -158229282 + (TA)n Simple_repeat Simple_repeat 1 170 0 274 315 136 12 chr4 26059484 26059646 -158229016 + MIR SINE MIR 79 260 -2 598 305 117 41 chr4 26061723 26062372 -158226290 - L2 LINE L2 -6 3307 2598 319 283 158 33 chr4 26062530 26062682 -158225980 - MIR SINE MIR -91 171 1 242 287 104 17 chr4 26062719 26062834 -158225828 + L2 LINE L2 3189 3313 0 234 0 0 0 chr4 26062881 26062907 -158225755 + (CAA)n Simple_repeat Simple_repeat 2 27 0 203 255 0 0 chr4 26064691 26064738 -158223924 + (TGAA)n Simple_repeat Simple_repeat 1 47 0 26 50 0 0 chr4 26064769 26064809 -158223853 + AT_rich Low_complexity Low_complexity 1 40 0 225 308 98 53 chr4 26066567 26066700 -158221962 + L2 LINE L2 2648 2786 -528 989 198 10 0 chr4 26067096 26067288 -158221374 - AluJo SINE Alu -1 311 118 217 213 0 0 chr4 26067334 26067381 -158221281 + L2 LINE L2 3263 3309 -4 3835 158 68 34 chr4 26068046 26068850 -158219812 - L1MC3 LINE L1 -172 7613 6782 515 203 17 25 chr4 26069030 26069148 -158219514 + L1MC3 LINE L1 6669 6785 -1000 455 290 148 17 chr4 26069148 26069324 -158219338 + LTR1 LTR ERV1 28 226 -559 1054 251 139 29 chr4 26069373 26069899 -158218763 - LTR1B LTR ERV1 -210 616 33 2724 222 30 8 chr4 26069904 26070526 -158218136 - L1MC3 LINE L1 -1000 6785 6150 3815 281 63 20 chr4 26070611 26073429 -158215233 - L1MC3 LINE L1 -745 5401 2959 6191 138 7 27 chr4 26073442 26074594 -158214068 - L1MA4A LINE L1 -4 6299 5169 5403 168 28 77 chr4 26074596 26074802 -158213860 - L1MA4A LINE L1 -1220 4926 4712 1484 193 15 15 chr4 26074802 26075072 -158213590 - AluJo SINE Alu -37 275 6 5403 168 28 77 chr4 26075072 26076242 -158212420 - L1MA4A LINE L1 -1434 4712 3617 272 153 68 17 chr4 26076342 26076401 -158212261 + MLT1A2 LTR MaLR 313 374 0 713 295 69 10 chr4 26076487 26076792 -158211870 - MER113 DNA MER1_type? -50 471 149 795 268 121 0 chr4 26076792 26077016 -158211646 - MIR SINE MIR -1 261 11 291 224 0 0 chr4 26127440 26127516 -158161146 + A-rich Low_complexity Low_complexity 1 76 0 21 0 0 0 chr4 26127946 26127967 -158160695 + AT_rich Low_complexity Low_complexity 1 21 0 183 222 44 0 chr4 26129550 26129595 -158159067 - L2 LINE L2 0 3272 3226 4253 32 0 19 chr4 26129873 26130401 -158158261 - L1PA4 LINE L1 -137 6018 5501 697 331 115 24 chr4 26133012 26133520 -158155142 - L2 LINE L2 0 3313 2761 687 316 64 57 chr4 26134987 26135834 -158152828 + L1MEd LINE L1 382 1234 -4885 347 331 86 44 chr4 26135847 26136209 -158152453 + L1MEd LINE L1 1239 1615 -4514 226 293 9 38 chr4 26137221 26137327 -158151335 - MIR SINE MIR -56 206 104 2366 108 0 0 chr4 26139413 26139718 -158148944 - AluSx SINE Alu -7 305 1 790 303 106 25 chr4 26140589 26140684 -158147978 + L2 LINE L2 2440 2526 -787 1947 105 11 22 chr4 26140684 26140961 -158147701 + AluSx SINE Alu 29 302 -10 790 303 106 25 chr4 26140961 26141498 -158147164 + L2 LINE L2 2526 3125 -188 584 276 77 63 chr4 26141590 26141876 -158146786 - L2 LINE L2 -4 3309 3020 325 171 244 0 chr4 26141876 26141958 -158146704 + L2 LINE L2 3208 3309 -4 2362 52 42 0 chr4 26141976 26142265 -158146397 + AluY SINE Alu 1 301 -10 294 203 0 0 chr4 26144072 26144131 -158144531 + L2 LINE L2 3212 3270 -2 699 320 66 8 chr4 26144874 26145308 -158143354 + LTR33 LTR ERVL 3 490 -31 693 303 54 8 chr4 26145558 26145799 -158142863 - MIR SINE MIR 0 262 11 914 219 53 27 chr4 26146551 26147009 -158141653 - Charlie4a DNA MER1_type -5 503 7 2064 120 3 0 chr4 26147634 26147945 -158140717 + AluSq SINE Alu 1 312 0 1881 132 0 84 chr4 26148606 26148939 -158139723 - AluSx SINE Alu -7 305 1 21 57 0 0 chr4 26149234 26149269 -158139393 + AT_rich Low_complexity Low_complexity 1 35 0 581 251 80 15 chr4 26149735 26149998 -158138664 + L1M1 LINE L1 3314 3593 -3972 7227 192 35 69 chr4 26150000 26150526 -158138136 + L1M1 LINE L1 3424 3966 -3599 1748 132 21 18 chr4 26150526 26150829 -158137833 + AluSx SINE Alu 1 304 0 7227 192 35 69 chr4 26150829 26152479 -158136183 + L1M1 LINE L1 3966 5532 -2033 22 56 0 0 chr4 26152686 26152722 -158135940 + AT_rich Low_complexity Low_complexity 1 36 0 14454 31 0 0 chr4 26152722 26155216 -158133446 - L1PA3 LINE L1 0 6155 3664 277 278 52 65 chr4 26155462 26155692 -158132970 + L1ME2 LINE L1 5349 5575 -589 235 298 131 9 chr4 26155812 26156148 -158132514 + L1ME2 LINE L1 5610 5980 -184 826 69 0 0 chr4 26157050 26157152 -158131510 - AluY SINE Alu -9 302 201 313 187 11 11 chr4 26157938 26158029 -158130633 + GA-rich Low_complexity Low_complexity 5 95 0 2223 106 3 0 chr4 26158127 26158429 -158130233 - AluSq SINE Alu 0 313 11 226 171 14 43 chr4 26158503 26158573 -158130089 + (TA)n Simple_repeat Simple_repeat 2 69 0 2500 65 0 7 chr4 26159359 26159667 -158128995 - AluY SINE Alu -5 306 1 257 160 147 27 chr4 26160915 26160990 -158127672 + L1MA5 LINE L1 6217 6300 0 704 88 18 0 chr4 26162310 26162423 -158126239 + (TAGA)n Simple_repeat Simple_repeat 4 118 0 181 83 56 0 chr4 26162428 26162464 -158126198 + (CATA)n Simple_repeat Simple_repeat 1 38 0 483 302 93 0 chr4 26163028 26163346 -158125316 + LTR43 LTR ERV1 201 453 -59 243 292 77 83 chr4 26163367 26163535 -158125127 + MIR SINE MIR 91 257 -5 414 190 101 0 chr4 26163612 26163691 -158124971 + MER31B LTR ERV1 1 87 -379 1078 69 49 113 chr4 26163702 26163905 -158124757 - L1PA5 LINE L1 -1 6153 5964 2394 38 0 0 chr4 26163906 26164193 -158124469 + L1PA5 LINE L1 5659 5945 -209 844 169 70 0 chr4 26164194 26164366 -158124296 + MER31A LTR ERV1 84 267 -218 1050 190 9 0 chr4 26164520 26164736 -158123926 + L1MA9 LINE L1 6095 6312 0 2303 209 24 10 chr4 26164764 26165266 -158123396 + L1MC1 LINE L1 5815 6323 -10 379 228 43 0 chr4 26165302 26165394 -158123268 + L1MB4 LINE L1 6053 6148 -32 320 323 10 10 chr4 26166342 26166438 -158122224 - LTR16A LTR ERVL -295 155 60 2962 166 71 0 chr4 26166863 26167413 -158121249 + LTR51 LTR ERV1 1 589 -82 335 275 17 17 chr4 26167632 26167752 -158120910 - MARNA DNA Mariner -347 239 120 449 257 134 29 chr4 26167832 26168003 -158120659 + MER5A DNA MER1_type 1 189 0 252 345 14 49 chr4 26168947 26169089 -158119573 + MIR SINE MIR 48 184 -78 208 295 0 0 chr4 26170192 26170270 -158118392 + (TA)n Simple_repeat Simple_repeat 1 78 0 730 270 202 21 chr4 26170790 26171304 -158117358 + L1MC4a LINE L1 5307 5913 -1895 1328 237 104 23 chr4 26171338 26171811 -158116851 + L1MC4a LINE L1 7297 7807 -1 1530 177 39 14 chr4 26171818 26172101 -158116561 + AluJo SINE Alu 1 290 -22 312 233 14 0 chr4 26174260 26174333 -158114329 + L2 LINE L2 2159 2232 -1082 401 342 0 0 chr4 26174505 26174666 -158113996 + L2 LINE L2 2159 2319 -995 271 289 87 10 chr4 26174774 26174878 -158113784 + L2 LINE L2 3202 3313 0 805 249 97 37 chr4 26175029 26175356 -158113306 - MER77 LTR ERV1 -4 601 277 23 33 0 0 chr4 26175697 26175727 -158112935 + AT_rich Low_complexity Low_complexity 1 30 0 199 363 37 57 chr4 26175818 26176118 -158112544 + L2 LINE L2 2365 2658 -656 702 183 0 0 chr4 26176199 26176319 -158112343 + AluSq/x SINE Alu 1 120 -193 202 111 0 28 chr4 26176330 26176366 -158112296 + (GAAAA)n Simple_repeat Simple_repeat 4 38 0 276 248 51 22 chr4 26177581 26177718 -158110944 - L1ME4a LINE L1 -3 6118 5978 31 26 0 0 chr4 26177731 26177769 -158110893 + AT_rich Low_complexity Low_complexity 1 38 0 2507 100 27 14 chr4 26177773 26178143 -158110519 + THE1C LTR MaLR 1 375 0 228 323 121 0 chr4 26178261 26178459 -158110203 - L1ME4a LINE L1 -391 5730 5509 326 273 106 31 chr4 26180226 26180387 -158108275 - MIR SINE MIR -38 224 52 1291 197 62 31 chr4 26181188 26181477 -158107185 - AluJo SINE Alu -14 298 1 25 31 0 0 chr4 26181523 26181555 -158107107 + AT_rich Low_complexity Low_complexity 1 32 0 181 250 96 0 chr4 26181802 26181854 -158106808 + L2 LINE L2 3211 3267 -5 233 429 14 14 chr4 26181968 26182108 -158106554 + L3 LINE CR1 1437 1576 -1 209 108 27 0 chr4 26182628 26182665 -158105997 + GA-rich Low_complexity Low_complexity 4 41 0 705 326 100 19 chr4 26182765 26183194 -158105468 + L2 LINE L2 2832 3295 -18 1573 208 22 25 chr4 26185187 26185553 -158103109 - MLT1A1 LTR MaLR 0 365 1 736 214 90 55 chr4 26186004 26186205 -158102457 - MIR SINE MIR -1 261 54 460 213 0 0 chr4 26186941 26187021 -158101641 + Tigger4(Zombi) DNA MER2_type 1 80 -2651 2749 134 2 22 chr4 26187028 26187474 -158101188 + Tigger4(Zombi) DNA MER2_type 2295 2731 0 325 373 69 36 chr4 26187586 26187833 -158100829 - L2 LINE L2 -252 3061 2807 234 274 161 24 chr4 26188660 26188784 -158099878 - MIR SINE MIR -12 250 110 2094 159 14 6 chr4 26188822 26189175 -158099487 - LTR32 LTR ERVL -6 465 110 505 145 167 43 chr4 26189175 26189313 -158099349 - LTR32 LTR ERVL -306 165 11 845 269 48 38 chr4 26190066 26190464 -158098198 + L1ME3A LINE L1 5637 6038 -132 1625 179 3 14 chr4 26191197 26191509 -158097153 + AluSx SINE Alu 1 309 0 21 0 0 0 chr4 26191823 26191844 -158096818 + AT_rich Low_complexity Low_complexity 1 21 0 577 329 119 9 chr4 26192547 26192766 -158095896 + MIR SINE MIR 2 244 -18 24 0 0 0 chr4 26192767 26192791 -158095871 + AT_rich Low_complexity Low_complexity 1 24 0 1940 150 4 0 chr4 26193785 26194059 -158094603 + AluSx SINE Alu 2 276 -36 434 33 17 0 chr4 26194061 26194121 -158094541 + (TAAA)n Simple_repeat Simple_repeat 2 62 0 7004 175 60 20 chr4 26194835 26196231 -158092431 + L1 LINE L1 10 1460 -6105 4647 166 47 16 chr4 26196209 26197224 -158091438 + L1 LINE L1 5183 6229 -1336 * 354 322 86 12 chr4 26198011 26198256 -158090406 - L1ME LINE L1 -304 5817 5555 722 207 20 0 chr4 26198377 26198527 -158090135 - MER97a DNA MER1_type? -712 182 30 261 322 122 9 chr4 26198600 26198715 -158089947 - L2 LINE L2 -1 3271 3144 526 356 90 23 chr4 26199408 26199886 -158088776 - L2 LINE L2 0 3313 2804 325 326 51 23 chr4 26201666 26201759 -158086903 + MIR SINE MIR 81 170 -92 785 266 18 14 chr4 26201759 26201977 -158086685 - MER20 DNA MER1_type 0 219 1 325 326 51 23 chr4 26201977 26202058 -158086604 + MIR SINE MIR 170 260 -2 708 10 20 59 chr4 26202470 26202571 -158086091 - L1PA4 LINE L1 0 6155 6059 1199 14 0 0 chr4 26202571 26202714 -158085948 + L1PA4 LINE L1 5785 5927 -228 598 242 64 0 chr4 26203077 26203234 -158085428 + MER58A DNA MER1_type 28 194 -30 1054 215 33 84 chr4 26203235 26203714 -158084948 + MLT1C LTR MaLR 1 466 -1 1081 270 59 28 chr4 26204156 26204578 -158084084 + MSTB2 LTR MaLR 23 457 0 416 332 87 12 chr4 26204578 26204831 -158083831 - L1ME LINE L1 -459 5711 5440 25 0 0 0 chr4 26205146 26205171 -158083491 + AT_rich Low_complexity Low_complexity 1 25 0 309 295 29 19 chr4 26205401 26205506 -158083156 + L2 LINE L2 2986 3091 -181 425 313 93 56 chr4 26206393 26206715 -158081947 + L2 LINE L2 2945 3283 -30 2137 136 30 38 chr4 26206715 26207082 -158081580 - THE1B LTR MaLR 0 364 1 425 313 93 56 chr4 26207082 26207114 -158081548 + L2 LINE L2 3283 3312 -1 225 0 0 0 chr4 26208571 26208596 -158080066 + (T)n Simple_repeat Simple_repeat 1 25 0 468 0 0 0 chr4 26208763 26208815 -158079847 + (CA)n Simple_repeat Simple_repeat 1 52 0 255 388 41 0 chr4 26209291 26209389 -158079273 - L2 LINE L2 -12 3301 3200 626 315 131 33 chr4 26209489 26209965 -158078697 - L2 LINE L2 0 3313 2742 245 29 29 0 chr4 26209965 26209999 -158078663 + (TATAA)n Simple_repeat Simple_repeat 5 39 0 626 315 131 33 chr4 26209999 26210179 -158078483 - L2 LINE L2 -571 2742 2581 309 230 81 46 chr4 26210209 26210343 -158078319 + MLT1A2 LTR MaLR 3 150 -215 834 169 14 0 chr4 26210351 26210493 -158078169 + FRAM SINE Alu 1 142 -34 210 118 0 0 chr4 26210500 26210534 -158078128 + (T)n Simple_repeat Simple_repeat 1 34 0 689 161 71 109 chr4 26210545 26210756 -158077906 + MLT1A2 LTR MaLR 172 374 0 341 333 79 12 chr4 26210766 26210931 -158077731 - L2 LINE L2 -38 3275 3100 192 343 55 0 chr4 26210975 26211048 -158077614 - L2 LINE L2 -178 3094 3018 435 303 112 62 chr4 26211531 26212033 -158076629 + L2 LINE L2 2790 3313 0 750 255 41 0 chr4 26212238 26212434 -158076228 - MER58A DNA MER1_type -20 204 1 362 276 168 16 chr4 26212505 26212690 -158075972 - MIR SINE MIR -15 247 35 2054 125 0 7 chr4 26214183 26214494 -158074168 - AluSg SINE Alu 0 310 2 317 273 16 55 chr4 26214554 26214682 -158073980 - MIR SINE MIR -106 156 34 307 205 77 13 chr4 26216571 26216649 -158072013 + MLT1L LTR MaLR 15 97 -518 1428 174 48 65 chr4 26217292 26217486 -158071176 - MER2 DNA MER2_type 0 345 158 1052 158 15 10 chr4 26217486 26217682 -158070980 + L1PB2 LINE L1 5953 6149 -2 1428 174 48 65 chr4 26217682 26217838 -158070824 - MER2 DNA MER2_type -187 158 1 2042 313 109 22 chr4 26218192 26219464 -158069198 + L2 LINE L2 1919 3305 -8 2065 152 3 0 chr4 26220361 26220663 -158067999 + AluSx SINE Alu 2 304 -8 2417 83 0 3 chr4 26221300 26221602 -158067060 - AluY SINE Alu -8 303 3 271 305 121 32 chr4 26221935 26222125 -158066537 + L2 LINE L2 2708 2914 -400 3804 41 2 0 chr4 26222147 26222608 -158066054 - L1PA4 LINE L1 -3 6152 5691 221 220 40 0 chr4 26222884 26222934 -158065728 + L2 LINE L2 3262 3313 0 386 304 82 6 chr4 26222941 26223112 -158065550 + MIR SINE MIR 28 211 -51 210 250 46 93 chr4 26223223 26223331 -158065331 - MIR SINE MIR -48 214 112 707 197 0 7 chr4 26223538 26223675 -158064987 - MLT1D LTR MaLR -369 136 1 312 275 76 15 chr4 26224143 26224274 -158064388 + MIR SINE MIR 114 252 -10 180 0 0 0 chr4 26224406 26224426 -158064236 + (TA)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chr4 26224425 26224445 -158064217 + (CA)n Simple_repeat Simple_repeat 2 21 0 485 320 195 29 chr4 26225870 26226461 -158062201 + L2 LINE L2 1665 2353 -961 295 352 25 92 chr4 26226866 26227181 -158061481 + L2 LINE L2 2869 3162 -110 260 297 20 0 chr4 26227646 26227747 -158060915 + Charlie7 DNA MER1_type 2510 2612 0 240 284 0 0 chr4 26227810 26227884 -158060778 + A-rich Low_complexity Low_complexity 1 74 0 195 354 15 0 chr4 26228011 26228076 -158060586 + L2 LINE L2 2715 2780 -534 257 288 168 56 chr4 26228365 26228490 -158060172 + L2 LINE L2 3134 3272 0 443 183 32 11 chr4 26229213 26229306 -158059356 - MSTB LTR MaLR -329 97 3 556 236 21 36 chr4 26229520 26229660 -158059002 + MIR SINE MIR 11 148 -114 466 222 9 9 chr4 26230553 26230661 -158058001 - MIR SINE MIR -4 258 151 223 226 0 19 chr4 26230749 26230802 -158057860 + (TA)n Simple_repeat Simple_repeat 1 52 0 2150 115 45 25 chr4 26231045 26231402 -158057260 + THE1B LTR MaLR 1 364 0 201 311 143 34 chr4 26231403 26231522 -158057140 - L2 LINE L2 -226 3087 2956 * 288 310 106 0 chr4 26231521 26231634 -158057028 - MIR SINE MIR -126 136 12 210 405 63 0 chr4 26231954 26232033 -158056629 + L2 LINE L2 3160 3243 -29 411 314 0 7 chr4 26232054 26232194 -158056468 + L2 LINE L2 2269 2407 -907 213 337 33 0 chr4 26232261 26232353 -158056309 + L2 LINE L2 2551 2645 -669 363 296 63 39 chr4 26232458 26232664 -158055998 + L2 LINE L2 2272 2482 -832 206 295 64 0 chr4 26233245 26233323 -158055339 + L2 LINE L2 3190 3272 0 2166 107 0 41 chr4 26233987 26234304 -158054358 + AluSx SINE Alu 1 304 -8 451 293 26 0 chr4 26234360 26234476 -158054186 - L2 LINE L2 -1 3271 3153 392 278 76 97 chr4 26237009 26237428 -158051234 - L1M2 LINE L1 -5468 1381 755 471 301 207 5 chr4 26238429 26238622 -158050040 + MIR SINE MIR 17 248 -14 227 279 0 29 chr4 26238653 26238721 -158049941 + L2 LINE L2 3236 3301 -12 613 292 245 2 chr4 26238723 26239131 -158049531 - L2 LINE L2 -1 3312 2806 512 221 152 44 chr4 26239441 26239567 -158049095 + MIR SINE MIR 8 119 -143 2401 98 0 0 chr4 26239567 26239873 -158048789 + AluSx SINE Alu 1 306 -6 512 221 152 44 chr4 26239873 26239950 -158048712 + MIR SINE MIR 119 233 -29 225 169 0 42 chr4 26240262 26240333 -158048329 + (TATAA)n Simple_repeat Simple_repeat 1 68 0 689 335 30 0 chr4 26240756 26240986 -158047676 - MIR SINE MIR -25 237 1 414 274 54 36 chr4 26240986 26241152 -158047510 + MIR SINE MIR 40 208 -54 524 207 103 45 chr4 26241331 26241534 -158047128 - MIR SINE MIR -15 247 38 253 317 106 19 chr4 26241566 26241670 -158046992 - MER5A DNA MER1_type -5 184 72 486 263 33 0 chr4 26241717 26241869 -158046793 - L1MA10 LINE L1 0 6334 6178 741 108 102 54 chr4 26241897 26242063 -158046599 - L1MC2 LINE L1 -37 6307 6134 1042 215 48 4 chr4 26242087 26242315 -158046347 + MLT1B LTR MaLR 153 390 0 422 263 151 20 chr4 26242364 26242516 -158046146 + MER5A DNA MER1_type 12 183 -6 1866 142 3 37 chr4 26242516 26242839 -158045823 + AluJo SINE Alu 1 312 0 239 250 0 0 chr4 26243319 26243375 -158045287 - MIR SINE MIR -110 152 97 2247 105 0 3 chr4 26243996 26244302 -158044360 - AluSq SINE Alu -8 305 1 236 235 111 12 chr4 26245319 26245400 -158043262 - L2 LINE L2 -41 3272 3184 1099 235 163 56 chr4 26245511 26245948 -158042714 - MLT1H LTR MaLR -7 542 46 1784 212 11 6 chr4 26245948 26246311 -158042351 + MLT1A1 LTR MaLR 1 365 0 1099 235 163 56 chr4 26246311 26246359 -158042303 - MLT1H LTR MaLR -503 46 5 391 234 16 70 chr4 26246382 26246510 -158042152 - MIR SINE MIR -140 122 2 379 336 137 38 chr4 26246538 26247320 -158041342 - L2 LINE L2 -177 3095 2224 1813 152 173 14 chr4 26247321 26247690 -158040972 + MSTA LTR MaLR 1 428 0 779 252 111 9 chr4 26247741 26247967 -158040695 - MIR SINE MIR -12 250 2 2441 66 0 13 chr4 26248465 26248768 -158039894 + AluY SINE Alu 1 299 -12 258 305 142 21 chr4 26248903 26249044 -158039618 - MIR SINE MIR 0 262 105 380 263 97 46 chr4 26249872 26250047 -158038615 - MIR SINE MIR -2 260 77 314 321 84 15 chr4 26250200 26250398 -158038264 + MIR SINE MIR 12 214 -36 266 358 67 8 chr4 26250987 26251107 -158037555 + L2 LINE L2 3146 3272 0 213 250 0 0 chr4 26252738 26252786 -158035876 + (TA)n Simple_repeat Simple_repeat 1 48 0 221 339 55 18 chr4 26254030 26254139 -158034523 - MIR3 SINE MIR -28 180 68 536 333 58 42 chr4 26254171 26254618 -158034044 + L2 LINE L2 2855 3308 -5 382 352 83 5 chr4 26255906 26256099 -158032563 + MIR SINE MIR 35 242 -20 1980 172 8 0 chr4 26256129 26256490 -158032172 + L1PA13 LINE L1 4647 5010 -1136 6206 96 8 6 chr4 26256639 26257767 -158030895 + L1PA13 LINE L1 5029 6160 -3 210 56 111 0 chr4 26257934 26257988 -158030674 + (TA)n Simple_repeat Simple_repeat 2 61 0 431 263 8 42 chr4 26258186 26258304 -158030358 - MLT1I LTR MaLR -200 209 96 369 329 40 63 chr4 26258319 26258620 -158030042 - L2 LINE L2 -352 2962 2669 230 224 0 0 chr4 26260339 26260388 -158028274 + L2 LINE L2 3199 3247 -66 663 276 152 9 chr4 26260410 26260620 -158028042 - MIR SINE MIR -20 242 3 244 328 0 0 chr4 26260639 26260700 -158027962 + L2 LINE L2 3194 3254 -18 1810 158 50 3 chr4 26261041 26261364 -158027298 + MER2 DNA MER2_type 8 345 0 424 237 72 17 chr4 26262494 26262635 -158026027 + MIR SINE MIR 22 162 -65 2550 105 6 3 chr4 26263005 26263357 -158025305 - THE1B LTR MaLR -11 353 1 406 250 76 0 chr4 26263677 26263769 -158024893 - MER81 DNA DNA 0 114 16 319 267 0 67 chr4 26263807 26263897 -158024765 - MER81 DNA DNA -30 84 1 1953 197 11 0 chr4 26264663 26265024 -158023638 - MLT1A1 LTR MaLR 0 365 1 685 200 21 7 chr4 26266715 26266855 -158021807 + FLAM_C SINE Alu 2 143 0 2283 80 3 0 chr4 26267418 26267704 -158020958 - AluY SINE Alu -24 287 1 525 309 173 12 chr4 26268126 26268456 -158020206 - L2 LINE L2 -4 3309 2927 267 274 153 16 chr4 26268476 26268600 -158020062 - MIR SINE MIR -72 190 50 1529 215 82 32 chr4 26268781 26269222 -158019440 - MLT1C LTR MaLR -4 463 1 210 328 42 50 chr4 26269556 26269675 -158018987 - L2 LINE L2 -8 3264 3147 5321 212 49 28 chr4 26269944 26270813 -158017849 + Charlie1a DNA MER1_type 7 920 -1841 2269 109 3 0 chr4 26270813 26271125 -158017537 - AluSp SINE Alu 0 313 1 5321 212 49 28 chr4 26271125 26271673 -158016989 + Charlie1a DNA MER1_type 920 1455 0 256 381 0 31 chr4 26271730 26271827 -158016835 - L2 LINE L2 -26 3246 3153 25 31 0 0 chr4 26272117 26272149 -158016513 + AT_rich Low_complexity Low_complexity 1 32 0 325 270 70 20 chr4 26272169 26272269 -158016393 - L1MEc LINE L1 -3987 2228 2124 714 179 185 12 chr4 26272360 26272522 -158016140 - MER20 DNA MER1_type 0 219 30 342 261 0 0 chr4 26272522 26272587 -158016075 - MER20 DNA MER1_type -154 65 1 701 291 78 38 chr4 26272813 26273755 -158014907 - L1MEc LINE L1 -4531 1688 795 207 0 0 0 chr4 26273918 26273941 -158014721 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 236 178 257 30 chr4 26274100 26274201 -158014461 - MER5C DNA MER1_type -200 124 1 2080 113 3 0 chr4 26274863 26275145 -158013517 + AluSp SINE Alu 1 283 -30 835 286 74 80 chr4 26275198 26275673 -158012989 + MLT1K LTR MaLR 4 475 -113 263 232 242 11 chr4 26275895 26275990 -158012672 + L2 LINE L2 3197 3313 0 426 269 50 8 chr4 26276008 26276127 -158012535 - L2 LINE L2 0 3313 3190 1961 173 12 6 chr4 26276127 26276456 -158012206 + MLT1A1 LTR MaLR 1 331 -34 195 116 93 23 chr4 26276464 26276507 -158012155 + L2 LINE L2 3161 3206 -107 459 290 147 28 chr4 26276645 26276931 -158011731 - LTR33 LTR ERVL -39 482 163 27 62 0 0 chr4 26277106 26277154 -158011508 + AT_rich Low_complexity Low_complexity 1 48 0 182 389 0 0 chr4 26277372 26277444 -158011218 - L2 LINE L2 -683 2631 2560 223 287 129 20 chr4 26278175 26278276 -158010386 - L2 LINE L2 -1 3312 3201 1539 181 7 11 chr4 26278434 26278711 -158009951 - MLT1A1 LTR MaLR 0 365 90 1407 233 3 23 chr4 26278724 26279024 -158009638 + MLT1A1 LTR MaLR 72 365 0 550 172 11 0 chr4 26279024 26279107 -158009555 - MLT1A1 LTR MaLR -272 93 10 203 328 16 0 chr4 26279232 26279293 -158009369 + L2 LINE L2 3210 3271 -1 1710 243 21 56 chr4 26279381 26279896 -158008766 + MLT1D LTR MaLR 1 497 -8 405 288 71 50 chr4 26280463 26280883 -158007779 + L1MEc LINE L1 1315 1743 -4653 993 274 68 58 chr4 26281092 26281559 -158007103 + MLT1H LTR MaLR 71 542 -7 1257 122 0 0 chr4 26281838 26282018 -158006644 - AluSg/x SINE Alu -2 307 128 233 157 59 20 chr4 26283003 26283054 -158005608 + LTR64 LTR ERVK 192 244 -314 1286 163 54 19 chr4 26283185 26283517 -158005145 + LTR54 LTR ERV1 1 394 -116 24 85 0 0 chr4 26284105 26284164 -158004498 + AT_rich Low_complexity Low_complexity 1 59 0 1984 118 7 11 chr4 26284391 26284670 -158003992 + AluSp SINE Alu 14 291 -22 237 266 25 13 chr4 26285770 26285849 -158002813 + LTR67 LTR ERVL 461 540 -17 32 26 0 0 chr4 26285981 26286020 -158002642 + AT_rich Low_complexity Low_complexity 1 39 0 475 369 24 10 chr4 26286170 26286376 -158002286 - L3 LINE CR1 -23 1554 1346 652 204 49 7 chr4 26287753 26287895 -158000767 + MIR SINE MIR 108 255 -7 292 357 36 0 chr4 26288126 26288266 -158000396 - MIR SINE MIR 0 262 118 270 289 0 11 chr4 26288282 26288372 -158000290 + LTR48B LTR ERV1 1 89 -555 758 186 82 52 chr4 26288391 26288622 -158000040 + MER39 LTR ERV1 296 533 -174 1494 200 73 0 chr4 26290084 26290399 -157998263 - MER58B DNA MER1_type -3 338 1 712 247 121 8 chr4 26291278 26291505 -157997157 + MIR SINE MIR 6 262 0 439 332 5 37 chr4 26293210 26293394 -157995268 + MIR SINE MIR 8 188 -65 297 0 0 0 chr4 26293853 26293886 -157994776 + (TG)n Simple_repeat Simple_repeat 2 34 0 21 36 0 0 chr4 26294583 26294611 -157994051 + AT_rich Low_complexity Low_complexity 1 28 0 249 57 0 0 chr4 26294744 26294779 -157993883 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr4 26295026 26295047 -157993615 + AT_rich Low_complexity Low_complexity 1 21 0 1519 121 59 3 chr4 26295255 26295560 -157993102 + MSTC LTR MaLR 1 416 -12 247 271 57 14 chr4 26295811 26295881 -157992781 - L2 LINE L2 -60 3253 3181 1013 162 14 121 chr4 26296173 26296463 -157992199 + L1PB4 LINE L1 5885 6143 -13 351 0 0 0 chr4 26296903 26296942 -157991720 + (TG)n Simple_repeat Simple_repeat 2 40 0 217 281 74 83 chr4 26297138 26297259 -157991403 - L2 LINE L2 0 3272 3153 188 298 48 0 chr4 26298025 26298109 -157990553 + MIR SINE MIR 96 183 -79 232 367 63 13 chr4 26298265 26298423 -157990239 + MIR3 SINE MIR 41 206 -2 397 164 87 48 chr4 26298453 26298557 -157990105 - MLT1A1 LTR MaLR -253 112 5 406 272 0 10 chr4 26298710 26298813 -157989849 + MIR3 SINE MIR 76 177 -31 243 211 8 154 chr4 26298905 26299028 -157989634 - MER94 DNA DNA -4 130 26 184 261 114 87 chr4 26299471 26299655 -157989007 + L2 LINE L2 2132 2320 -994 237 316 109 11 chr4 26300766 26300940 -157987722 + Charlie8 DNA MER1_type 45 235 -2182 3156 187 50 23 chr4 26301049 26301733 -157986929 + MER52A LTR ERV1 404 1105 -650 4709 167 30 0 chr4 26301736 26302562 -157986100 + MER52A LTR ERV1 905 1755 0 1955 46 0 77 chr4 26303657 26303918 -157984744 + AluY SINE Alu 53 293 -18 1436 158 7 52 chr4 26304029 26304301 -157984361 + AluJo SINE Alu 5 264 -48 1210 245 24 12 chr4 26304409 26304748 -157983914 - MLT1A1 LTR MaLR 0 365 23 356 232 77 65 chr4 26305071 26305226 -157983436 + MIR SINE MIR 95 251 -11 328 327 61 0 chr4 26307672 26307915 -157980747 + L1ME3A LINE L1 5327 5582 -584 234 0 0 0 chr4 26307936 26307962 -157980700 + (CA)n Simple_repeat Simple_repeat 2 27 0 228 67 0 0 chr4 26308108 26308138 -157980524 + (GA)n Simple_repeat Simple_repeat 1 30 0 293 213 37 93 chr4 26309319 26309427 -157979235 - MIR SINE MIR -7 255 154 418 273 49 49 chr4 26309524 26309729 -157978933 + L1ME3A LINE L1 5632 5836 -334 381 111 0 0 chr4 26309748 26309802 -157978860 - MLT1A1 LTR MaLR 0 365 312 604 121 0 10 chr4 26309802 26309901 -157978761 + MER4A LTR ERV1 1 98 -566 1863 114 3 23 chr4 26309956 26310255 -157978407 + MER4A LTR ERV1 372 664 0 1399 217 7 7 chr4 26310255 26310564 -157978098 - MLT1A1 LTR MaLR -50 315 7 607 236 116 21 chr4 26310576 26310809 -157977853 + L1ME3A LINE L1 5857 6111 -59 210 143 0 0 chr4 26312212 26312247 -157976415 + (TCC)n Simple_repeat Simple_repeat 3 37 0 1032 144 6 0 chr4 26312389 26312570 -157976092 + L1MA6 LINE L1 6086 6267 -33 1132 204 83 4 chr4 26312585 26312654 -157976008 + AluJo SINE Alu 49 111 -201 387 0 0 0 chr4 26312654 26312697 -157975965 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 1132 204 83 4 chr4 26312697 26312857 -157975805 + AluJo SINE Alu 111 296 -16 1677 170 154 16 chr4 26313047 26313423 -157975239 + MSTA LTR MaLR 1 428 0 1772 203 34 10 chr4 26313424 26313808 -157974854 - MSTD LTR MaLR 0 396 4 597 320 90 50 chr4 26313925 26314475 -157974187 + L2 LINE L2 2712 3294 -19 1909 172 45 12 chr4 26314765 26315184 -157973478 + L1MB4 LINE L1 5622 6054 -126 353 205 107 0 chr4 26315194 26315306 -157973356 + L1MC/D LINE L1 5203 5326 -820 283 188 0 0 chr4 26315312 26315360 -157973302 + L1MC/D LINE L1 5490 5537 -796 7986 184 41 27 chr4 26315364 26316720 -157971942 + L1MA9 LINE L1 3415 4836 -1476 2100 181 56 7 chr4 26316720 26317128 -157971534 - MSTA LTR MaLR 0 428 1 7986 184 41 27 chr4 26317128 26318240 -157970422 + L1MA9 LINE L1 4836 5930 -382 2230 153 52 2 chr4 26318241 26318646 -157970016 - MSTA LTR MaLR -3 425 1 745 175 11 33 chr4 26318646 26318829 -157969833 + L1MA9 LINE L1 5924 6102 -210 38695 68 4 1 chr4 26318835 26324815 -157963847 + L1PA5 LINE L1 13 6011 -143 1551 186 6 125 chr4 26375987 26376466 -157912196 - LTR8 LTR ERV1 -269 422 1 572 226 86 86 chr4 26376466 26376501 -157912161 - MER39 LTR ERV1 -134 573 539 2387 61 0 3 chr4 26376501 26376794 -157911868 - AluY SINE Alu -19 292 1 572 226 86 86 chr4 26376794 26377072 -157911590 - MER39 LTR ERV1 -167 540 260 471 143 71 0 chr4 26377354 26377438 -157911224 + Tigger1 DNA MER2_type 1516 1605 -813 294 29 0 0 chr4 26377439 26377474 -157911188 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 3737 144 3 2 chr4 26377477 26378095 -157910567 + Tigger1 DNA MER2_type 1800 2418 0 1471 110 60 60 chr4 26378665 26378984 -157909678 - L1P4 LINE L1 -579 5587 5269 1372 169 23 19 chr4 26378985 26379251 -157909411 + Tigger3(Golem) DNA MER2_type 2771 3037 0 216 259 0 0 chr4 26379263 26379344 -157909318 + (TA)n Simple_repeat Simple_repeat 2 82 0 1730 175 15 18 chr4 26379371 26379714 -157908948 - MLT2C1 LTR ERVL -53 344 3 495 381 47 27 chr4 26379717 26380016 -157908646 - L2 LINE L2 -107 3165 2861 276 319 56 21 chr4 26380227 26380556 -157908106 + L2 LINE L2 2810 3224 -89 230 326 52 37 chr4 26381085 26381220 -157907442 + MIR SINE MIR 126 262 0 200 122 0 189 chr4 26382206 26382280 -157906382 - L2 LINE L2 -181 3091 3032 437 307 73 59 chr4 26382395 26382682 -157905980 - MER115 DNA AcHobo -182 511 221 2043 224 76 52 chr4 26382830 26382860 -157905802 - MER21B LTR ERV1 -57 806 778 1702 161 102 15 chr4 26382860 26383195 -157905467 + THE1B LTR MaLR 1 364 0 11697 95 2 0 chr4 26383195 26384772 -157903890 + THE1B-int LTR MaLR 1 1580 0 2202 136 33 22 chr4 26384772 26385132 -157903530 + THE1B LTR MaLR 1 364 0 2043 224 76 52 chr4 26385132 26385836 -157902826 - MER21B LTR ERV1 -84 779 52 365 328 0 24 chr4 26387711 26387836 -157900826 + L2 LINE L2 3190 3311 -2 1949 157 28 0 chr4 26388536 26388823 -157899839 - AluJb SINE Alu -16 296 2 301 327 62 0 chr4 26388824 26388937 -157899725 - L2 LINE L2 -8 3264 3145 335 202 11 0 chr4 26389420 26389509 -157899153 + (TA)n Simple_repeat Simple_repeat 2 91 0 322 332 11 106 chr4 26390392 26390675 -157897987 - L2 LINE L2 0 3272 3017 470 279 106 8 chr4 26390801 26391038 -157897624 + MIR SINE MIR 3 262 0 383 195 35 71 chr4 26392309 26392422 -157896240 + MIR SINE MIR 73 181 -81 2390 238 67 18 chr4 26393332 26394270 -157894392 + L1M4 LINE L1 3856 4839 -1307 717 58 0 0 chr4 26394271 26394358 -157894304 - AluY SINE Alu -20 291 205 1245 197 74 54 chr4 26394359 26394835 -157893827 + L1M4 LINE L1 4832 5317 -841 347 285 131 0 chr4 26394841 26394971 -157893691 - MIR SINE MIR -66 196 50 185 108 27 0 chr4 26395112 26395149 -157893513 + (CA)n Simple_repeat Simple_repeat 2 39 0 381 158 49 6 chr4 26395177 26395341 -157893321 + (CA)n Simple_repeat Simple_repeat 1 171 0 245 154 44 0 chr4 26395366 26395457 -157893205 + (CA)n Simple_repeat Simple_repeat 1 95 0 491 234 54 0 chr4 26395583 26395694 -157892968 - MER45A DNA AcHobo -26 152 36 674 209 29 7 chr4 26395727 26395866 -157892796 + FRAM SINE Alu 20 161 -15 36782 71 16 14 chr4 26396158 26398254 -157890408 + L1PA5 LINE L1 1 2091 -4063 881 62 0 0 chr4 26398254 26398367 -157890295 + L1PA5 LINE L1 6039 6151 -3 36782 71 16 14 chr4 26398367 26402399 -157886263 + L1PA5 LINE L1 2091 6147 -7 223 318 163 0 chr4 26402894 26403023 -157885639 + MIR SINE MIR 77 226 -36 241 326 45 11 chr4 26403916 26404005 -157884657 + MIR SINE MIR 9 100 -162 449 320 102 15 chr4 26404085 26404282 -157884380 + MIR SINE MIR 4 217 -45 2153 121 0 0 chr4 26404299 26404596 -157884066 + AluSq SINE Alu 1 297 -16 1877 159 3 19 chr4 26405142 26405501 -157883161 - L1M2 LINE L1 -569 5743 5391 649 276 93 32 chr4 26405501 26405747 -157882915 - MIR SINE MIR 0 262 2 1578 164 23 49 chr4 26406399 26406734 -157881928 - THE1C LTR MaLR 0 375 50 2295 124 22 28 chr4 26406734 26407098 -157881564 - THE1B LTR MaLR 0 364 3 1578 164 23 49 chr4 26407098 26407147 -157881515 - THE1C LTR MaLR -325 50 1 25 31 0 0 chr4 26407641 26407673 -157880989 + AT_rich Low_complexity Low_complexity 1 32 0 2053 133 21 42 chr4 26407970 26408352 -157880310 - THE1C LTR MaLR -1 374 1 255 292 0 0 chr4 26408368 26408433 -157880229 + (CATA)n Simple_repeat Simple_repeat 3 67 0 614 219 0 16 chr4 26408600 26408723 -157879939 + FLAM_A SINE Alu 2 122 -11 2221 130 11 22 chr4 26411059 26411427 -157877235 - THE1B LTR MaLR 0 364 1 11395 107 4 1 chr4 26411427 26413003 -157875659 - THE1B-int LTR MaLR 0 1580 1 2247 136 8 19 chr4 26413003 26413371 -157875291 - THE1B LTR MaLR 0 364 1 181 302 48 16 chr4 26413878 26413941 -157874721 - L2 LINE L2 -3 3269 3205 440 313 111 15 chr4 26415536 26415760 -157872902 - MIR SINE MIR -19 243 2 1335 187 46 89 chr4 26415765 26416160 -157872502 + MLT1B LTR MaLR 5 382 -8 1194 76 10 26 chr4 26416788 26417094 -157871568 + (TAGA)n Simple_repeat Simple_repeat 1 301 0 999 233 82 48 chr4 26418627 26418979 -157869683 - MLT1A1 LTR MaLR 0 365 2 694 183 35 28 chr4 26419271 26419413 -157869249 + MIR SINE MIR 38 180 -82 22 0 0 0 chr4 26419446 26419468 -157869194 + AT_rich Low_complexity Low_complexity 1 22 0 354 293 120 20 chr4 26419487 26419637 -157869025 - MIR SINE MIR -26 236 72 1824 211 114 71 chr4 26419908 26420530 -157868132 + MLT1E1 LTR MaLR 3 651 -3 2531 57 0 13 chr4 26420537 26420852 -157867810 + AluY SINE Alu 1 311 0 183 435 0 0 chr4 26420933 26421025 -157867637 - MIR3 SINE MIR -21 187 96 591 277 98 18 chr4 26421520 26421744 -157866918 + MIR SINE MIR 13 254 -8 2141 109 10 0 chr4 26423202 26423495 -157865167 + AluSp SINE Alu 1 296 -17 376 282 34 51 chr4 26424000 26424117 -157864545 + L2 LINE L2 3179 3293 -20 676 263 44 31 chr4 26424121 26424349 -157864313 - MIR SINE MIR -19 243 13 537 267 27 63 chr4 26424655 26424876 -157863786 - MIR SINE MIR -1 261 49 201 254 0 36 chr4 26424981 26425036 -157863626 - MIR SINE MIR -136 72 20 724 112 0 0 chr4 26425042 26425193 -157863469 - AluSp/q SINE Alu 0 337 187 1491 183 55 55 chr4 26425671 26426038 -157862624 - MLT1A2 LTR MaLR -7 367 1 3958 172 69 17 chr4 26426353 26427138 -157861524 + LTR1B LTR ERV1 1 826 0 621 179 342 15 chr4 26428178 26428365 -157860297 - MLT2B2 LTR ERVL 0 515 265 489 100 62 0 chr4 26428365 26428445 -157860217 + PABL_A LTR ERV1 1 85 -575 9856 87 6 1 chr4 26428445 26429903 -157858759 - L1P LINE L1 -1479 4667 3203 4027 85 9 7 chr4 26429903 26430478 -157858184 + PABL_B LTR ERV1 92 667 0 1497 176 11 0 chr4 26430478 26430740 -157857922 - MLT2B2 LTR ERVL -250 265 1 307 259 54 27 chr4 26430835 26430982 -157857680 - HAL1 LINE L1 -476 2031 1881 1873 142 40 32 chr4 26431133 26431479 -157857183 - THE1B LTR MaLR -15 349 1 1072 267 32 19 chr4 26431484 26431855 -157856807 - HAL1 LINE L1 -831 1676 1301 354 329 19 6 chr4 26431922 26432080 -157856582 - MLT1E LTR MaLR -433 160 1 1951 58 11 4 chr4 26433355 26433615 -157855047 - L1PA7 LINE L1 -361 5793 5532 2782 62 0 8 chr4 26433618 26433976 -157854686 + L1PA7 LINE L1 5795 6149 -5 281 102 41 0 chr4 26433976 26434025 -157854637 + (TATG)n Simple_repeat Simple_repeat 3 53 0 262 327 89 10 chr4 26434228 26434329 -157854333 + L2 LINE L2 3187 3295 -18 555 302 40 24 chr4 26434651 26434903 -157853759 + MIR SINE MIR 4 259 -3 312 290 16 75 chr4 26434977 26435163 -157853499 + MLT1J2 LTR MaLR 52 226 -183 209 377 61 9 chr4 26435831 26435945 -157852717 - MIR SINE MIR -124 138 19 237 370 36 7 chr4 26436397 26436535 -157852127 + L2 LINE L2 3168 3309 -4 1527 161 57 28 chr4 26436749 26437103 -157851559 + THE1C LTR MaLR 12 375 0 313 355 30 15 chr4 26438102 26438302 -157850360 + HERV16 LTR ERVL 480 682 -5082 288 365 24 42 chr4 26438560 26438894 -157849768 + HERV16 LTR ERVL 1091 1418 -4346 7120 129 32 8 chr4 26439201 26440404 -157848258 - Tigger3b DNA MER2_type 0 1231 1 260 358 50 17 chr4 26440479 26440599 -157848063 + HERV16 LTR ERVL 2876 2999 -1997 1267 337 63 27 chr4 26440680 26441834 -157846828 + HERV16 LTR ERVL 3150 4345 -1419 416 363 32 7 chr4 26442222 26442500 -157846162 + HERV16 LTR ERVL 5043 5327 -327 1888 155 132 5 chr4 26442895 26443275 -157845387 - MSTA LTR MaLR 0 428 1 354 313 119 0 chr4 26443581 26443715 -157844947 + LTR67 LTR ERVL 408 557 0 2535 255 43 7 chr4 26443794 26444519 -157844143 - L1ME2 LINE L1 -6 6158 5408 2236 95 7 3 chr4 26444525 26444821 -157843841 + THE1B LTR MaLR 68 364 0 3922 257 72 8 chr4 26444821 26446302 -157842360 - L1ME2 LINE L1 -745 5401 3836 257 103 0 0 chr4 26446317 26446356 -157842306 - L1PB1 LINE L1 -23 6128 6090 * 6179 153 23 9 chr4 26446353 26448087 -157840575 - L1PB1 LINE L1 0 6151 4389 185 0 40 0 chr4 26448087 26448112 -157840550 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 6179 153 23 9 chr4 26448112 26448314 -157840348 - L1PB1 LINE L1 -1762 4389 4191 592 275 179 23 chr4 26448317 26448703 -157839959 - L1MA3 LINE L1 -2300 3846 3401 725 160 0 0 chr4 26448710 26448835 -157839827 + L1MA3 LINE L1 3826 3950 -2196 42301 37 21 2 chr4 26448865 26454897 -157833765 + L1PA2 LINE L1 2 6155 0 6663 185 25 9 chr4 26454909 26456338 -157832324 + L1MA3 LINE L1 3951 5401 -745 4737 154 17 19 chr4 26456343 26457183 -157831479 + L1MA3 LINE L1 5447 6284 -21 385 272 115 10 chr4 26457268 26457581 -157831081 - L1ME2 LINE L1 -2789 3357 3012 2509 105 39 3 chr4 26457675 26458037 -157830625 + THE1C LTR MaLR 1 375 0 472 301 21 43 chr4 26458135 26458414 -157830248 - L1ME2 LINE L1 -3361 2785 2513 12613 214 30 17 chr4 26458467 26460548 -157828114 - L1MEc LINE L1 -1241 4974 2862 1415 75 0 0 chr4 26460548 26460735 -157827927 - L1PA5 LINE L1 0 6154 5968 12613 214 30 17 chr4 26460735 26461970 -157826692 - L1MEc LINE L1 -3353 2862 1644 242 209 66 55 chr4 26462404 26462495 -157826167 - L1ME LINE L1 -509 5612 5521 22 0 0 0 chr4 26463042 26463064 -157825598 + AT_rich Low_complexity Low_complexity 1 22 0 3621 109 31 7 chr4 26463273 26463814 -157824848 - L1PA13 LINE L1 -25 6138 5585 3495 145 35 2 chr4 26463823 26464648 -157824014 + L1PA13 LINE L1 4733 5575 -588 1107 324 34 43 chr4 26465775 26466642 -157822020 + L2 LINE L2 2445 3313 0 188 370 14 75 chr4 26468370 26468516 -157820146 - L2 LINE L2 0 3272 3136 339 241 51 0 chr4 26468551 26468630 -157820032 + MER7A DNA MER2_type 1 81 -265 2609 154 24 50 chr4 26468653 26468795 -157819867 - L1PA16 LINE L1 -4 6162 6018 2560 45 0 19 chr4 26468795 26469109 -157819553 - AluY SINE Alu 0 311 4 2154 123 7 0 chr4 26469109 26469410 -157819252 - AluSg SINE Alu -7 303 1 2609 154 24 50 chr4 26469410 26469805 -157818857 - L1PA16 LINE L1 -146 6020 5638 213 319 90 24 chr4 26469984 26470150 -157818512 + L3 LINE CR1 580 756 -821 25 95 0 0 chr4 26470721 26470795 -157817867 + AT_rich Low_complexity Low_complexity 1 74 0 1445 214 0 21 chr4 26470800 26471123 -157817539 + AluJb SINE Alu 1 317 0 761 261 128 28 chr4 26471350 26471710 -157816952 - L2 LINE L2 -1 3312 2917 805 291 160 27 chr4 26471731 26472205 -157816457 + L3 LINE CR1 958 1494 -83 2262 111 0 3 chr4 26472360 26472666 -157815996 - AluSg SINE Alu -5 305 1 2075 115 4 7 chr4 26473126 26473452 -157815210 + AluSg SINE Alu 4 328 0 216 364 0 0 chr4 26473589 26473666 -157814996 + L2 LINE L2 3196 3272 0 231 261 31 0 chr4 26473685 26473750 -157814912 - MARNA DNA Mariner -112 474 408 228 245 144 50 chr4 26473958 26474097 -157814565 + L2 LINE L2 2520 2671 -643 461 296 26 20 chr4 26474127 26474279 -157814383 + MIR SINE MIR 59 211 -51 386 261 106 67 chr4 26474596 26474776 -157813886 + L2 LINE L2 3085 3271 -1 1902 149 88 25 chr4 26475958 26476355 -157812307 + MER65A LTR ERV1 1 422 -23 329 325 41 35 chr4 26476396 26476565 -157812097 - MIR SINE MIR -87 175 6 2528 81 29 0 chr4 26476590 26476935 -157811727 + THE1A LTR MaLR 1 355 0 5740 108 11 1 chr4 26476936 26477732 -157810930 + THE1A-int LTR MaLR 2 805 -775 3258 96 5 0 chr4 26477738 26478166 -157810496 + THE1A-int LTR MaLR 1151 1580 0 2622 88 6 0 chr4 26478166 26478519 -157810143 + THE1A LTR MaLR 1 355 0 255 307 0 23 chr4 26478519 26478607 -157810055 + (CATATA)n Simple_repeat Simple_repeat 1 86 0 359 370 14 7 chr4 26480522 26480660 -157808002 - L2 LINE L2 0 3272 3134 2212 116 0 7 chr4 26480678 26480980 -157807682 + AluSx SINE Alu 1 300 -12 248 174 20 0 chr4 26481177 26481241 -157807421 - MLT1I LTR MaLR -26 541 307 2336 51 3 0 chr4 26481341 26481634 -157807028 - L1PA4 LINE L1 0 6155 5862 5226 25 0 0 chr4 26481634 26482409 -157806253 + L1PA4 LINE L1 5091 5865 -290 303 268 23 19 chr4 26482474 26482577 -157806085 - MLT1I LTR MaLR -258 151 53 406 296 130 0 chr4 26483661 26483823 -157804839 - MIR SINE MIR -14 248 66 979 309 38 16 chr4 26484022 26484388 -157804274 + HAL1 LINE L1 261 634 -1873 593 239 77 66 chr4 26484416 26484780 -157803882 + HAL1 LINE L1 2131 2498 -9 394 271 56 39 chr4 26484898 26485046 -157803616 + MIR3 SINE MIR 14 166 -42 1103 45 0 0 chr4 26485543 26485677 -157802985 + L1PA5 LINE L1 6008 6141 -13 450 0 0 0 chr4 26485679 26485729 -157802933 + (TA)n Simple_repeat Simple_repeat 1 50 0 318 283 127 73 chr4 26486067 26486275 -157802387 - MLT1J1 LTR MaLR -114 332 100 1897 194 29 5 chr4 26486275 26486656 -157802006 + MLT1B LTR MaLR 1 390 0 318 283 127 73 chr4 26486656 26486761 -157801901 - MLT1J1 LTR MaLR -346 100 2 183 244 52 122 chr4 26487746 26487861 -157800801 - L2 LINE L2 -86 3227 3121 * 450 284 69 27 chr4 26487856 26488141 -157800521 - L2 LINE L2 -559 2755 2422 1017 200 26 0 chr4 26488348 26488543 -157800119 + LTR32 LTR ERVL 15 214 -257 4240 79 32 29 chr4 26488543 26489589 -157799073 - MER11A LTR ERVK 0 1266 1 1182 220 20 4 chr4 26489589 26489834 -157798828 + LTR32 LTR ERVL 209 457 -14 862 189 0 7 chr4 26491502 26491655 -157797007 - MER61A LTR ERV1 -191 152 1 197 219 37 122 chr4 26492114 26492196 -157796466 + MIR SINE MIR 118 192 -70 630 306 47 35 chr4 26492197 26492455 -157796207 + MIR SINE MIR 2 262 0 282 287 160 13 chr4 26492500 26492650 -157796012 - MIR SINE MIR -2 260 89 190 371 52 26 chr4 26492810 26492926 -157795736 - MIR SINE MIR -28 234 116 459 313 67 33 chr4 26493885 26494132 -157794530 + MIR SINE MIR 8 257 -5 684 301 56 5 chr4 26494850 26495066 -157793596 - MIR SINE MIR -20 242 16 268 289 87 19 chr4 26497448 26497552 -157791110 + L2 LINE L2 3158 3268 -4 * 336 274 24 65 chr4 26497521 26497645 -157791017 - L2 LINE L2 -3 3310 3192 231 170 0 0 chr4 26497688 26497735 -157790927 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 517 311 101 35 chr4 26498388 26498439 -157790223 + LTR16A1 LTR ERVL 2 48 -409 1673 175 45 17 chr4 26498439 26498794 -157789868 - MLT1A1 LTR MaLR 0 365 1 517 311 101 35 chr4 26498794 26499170 -157789492 + LTR16A1 LTR ERVL 48 457 0 210 236 0 36 chr4 26499689 26499744 -157788918 + (CATATA)n Simple_repeat Simple_repeat 1 53 0 345 285 102 7 chr4 26499749 26499886 -157788776 - MIR3 SINE MIR -25 183 34 183 375 0 11 chr4 26501083 26501171 -157787491 + MER5A DNA MER1_type 27 113 -76 854 192 0 0 chr4 26501411 26501581 -157787081 + AluJb SINE Alu 138 307 0 270 293 93 27 chr4 26502728 26502878 -157785784 - MIR SINE MIR -74 188 29 1913 225 59 17 chr4 26503213 26503783 -157784879 + L1MC4a LINE L1 6176 6358 -1 2169 214 65 62 chr4 26504342 26505234 -157783428 - Charlie2 DNA MER1_type 0 2862 1968 30 45 0 0 chr4 26505240 26505284 -157783378 + AT_rich Low_complexity Low_complexity 1 44 0 590 252 58 71 chr4 26505394 26505703 -157782959 - Charlie2 DNA MER1_type -2533 329 25 508 213 50 14 chr4 26505909 26506050 -157782612 - MER103 DNA DNA -15 151 6 206 364 66 25 chr4 26506671 26506792 -157781870 + MIR SINE MIR 16 141 -67 2856 170 19 14 chr4 26508347 26508859 -157779803 - MLT2B2 LTR ERVL 0 515 1 389 340 28 14 chr4 26508974 26509118 -157779544 + MIR SINE MIR 15 160 -102 3107 21 0 19 chr4 26509120 26509493 -157779169 - L1PA2 LINE L1 0 6155 5790 4676 12 0 0 chr4 26509493 26510397 -157778265 + L1PA2 LINE L1 4884 5787 -368 231 326 22 0 chr4 26510923 26511015 -157777647 + MIR3 SINE MIR 93 186 -22 289 237 34 59 chr4 26511095 26511213 -157777449 + Charlie8 DNA MER1_type 77 191 -2226 477 291 55 39 chr4 26511327 26511594 -157777068 + L2 LINE L2 2917 3303 -10 1354 118 81 0 chr4 26512494 26512705 -157775957 - MER30 DNA MER1_type -2 228 1 27 29 0 0 chr4 26513031 26513065 -157775597 + AT_rich Low_complexity Low_complexity 1 34 0 267 398 41 29 chr4 26513415 26513586 -157775076 + L2 LINE L2 3091 3263 -9 271 289 82 24 chr4 26514650 26514858 -157773804 + L1ME1 LINE L1 4034 4253 -1893 2157 235 94 20 chr4 26514870 26515600 -157773062 + L1ME1 LINE L1 5383 6156 -10 348 134 0 0 chr4 26515865 26515877 -157772785 + (GA)n Simple_repeat Simple_repeat 2 13 -55 195 69 0 0 chr4 26515877 26515906 -157772756 + (CA)n Simple_repeat Simple_repeat 2 30 0 348 134 0 0 chr4 26515906 26515960 -157772702 + (GA)n Simple_repeat Simple_repeat 12 68 0 374 258 68 30 chr4 26516088 26516220 -157772442 + MLT1J LTR MaLR 226 362 -149 303 298 94 41 chr4 26516352 26516523 -157772139 - MIR3 SINE MIR -27 181 2 249 361 25 17 chr4 26516540 26516659 -157772003 - L2 LINE L2 -15 3298 3179 1155 156 28 9 chr4 26517298 26517516 -157771146 + AluSg/x SINE Alu 82 303 -9 261 188 38 0 chr4 26517558 26517638 -157771024 + (TA)n Simple_repeat Simple_repeat 2 84 0 230 304 0 14 chr4 26517671 26517740 -157770922 + L2 LINE L2 3232 3299 -14 2463 268 49 69 chr4 26519043 26520230 -157768432 + L1MEc LINE L1 331 1541 -4855 2337 61 0 10 chr4 26520230 26520524 -157768138 + AluY SINE Alu 6 296 -15 2463 268 49 69 chr4 26520524 26520886 -157767776 + L1MEc LINE L1 1541 1838 -4558 2018 131 7 0 chr4 26520886 26521169 -157767493 + AluSx SINE Alu 2 286 -26 2463 268 49 69 chr4 26521169 26521485 -157767177 + L1MEc LINE L1 1838 2159 -4237 668 221 13 13 chr4 26521510 26521668 -157766994 - MLT1H LTR MaLR 0 567 410 692 151 0 0 chr4 26521677 26521783 -157766879 + U6 snRNA snRNA 2 107 0 1189 143 20 0 chr4 26521784 26521987 -157766675 + L1MA4A LINE L1 6087 6293 -10 416 276 136 53 chr4 26523968 26524291 -157764371 + MLT1H1 LTR MaLR 179 528 -27 743 293 88 26 chr4 26524757 26525064 -157763598 - MLT1H LTR MaLR -202 347 22 186 280 40 0 chr4 26526448 26526498 -157762164 - L2 LINE L2 -12 3260 3209 7353 40 11 3 chr4 26527730 26529099 -157759563 - L1PA5 LINE L1 -7 6147 4774 9996 29 5 1 chr4 26529101 26530304 -157758358 + L1PA5 LINE L1 3549 4756 -1390 299 291 170 32 chr4 26530663 26530747 -157757915 + LTR33A LTR ERVL 102 173 -350 1811 153 129 21 chr4 26530747 26531133 -157757529 + MSTA LTR MaLR 1 428 0 299 291 170 32 chr4 26531133 26531295 -157757367 + LTR33A LTR ERVL 173 382 -141 2210 104 7 3 chr4 26531660 26531958 -157756704 - AluSx SINE Alu -13 299 1 1145 314 110 13 chr4 26532122 26532650 -157756012 + L2 LINE L2 2352 2930 -384 182 174 22 0 chr4 26533914 26533960 -157754702 + GA-rich Low_complexity Low_complexity 3 49 0 1714 226 35 13 chr4 26534081 26534283 -157754379 - Charlie4a DNA MER1_type -1467 494 298 1809 156 35 30 chr4 26534283 26534656 -157754006 - THE1C LTR MaLR 0 375 1 1714 226 35 13 chr4 26534656 26534913 -157753749 - Charlie4a DNA MER1_type -1663 298 25 189 200 89 22 chr4 26535165 26535210 -157753452 + MIR SINE MIR 131 178 -84 336 306 45 0 chr4 26585367 26585524 -157703138 - L1M4 LINE L1 -2128 4018 3855 460 138 88 0 chr4 26585918 26585998 -157702664 - MLT1A2 LTR MaLR 0 374 288 737 273 104 7 chr4 26586201 26586490 -157702172 + MLT1K LTR MaLR 239 555 -33 2694 81 17 0 chr4 26586625 26586983 -157701679 + THE1B LTR MaLR 1 364 0 900 239 50 5 chr4 26587043 26587244 -157701418 + MIR SINE MIR 26 235 -27 1459 169 157 27 chr4 26587781 26588220 -157700442 - LTR54B LTR ERV1 -2 496 1 737 314 28 48 chr4 26589283 26589636 -157699026 - LTR16A1 LTR ERVL -5 452 107 498 316 113 1 chr4 26590020 26590225 -157698437 + MIR SINE MIR 36 261 -1 1765 188 0 3 chr4 26590760 26591052 -157697610 + AluJb SINE Alu 1 291 -21 676 289 71 42 chr4 26591879 26592118 -157696544 - MIR SINE MIR -14 248 3 343 308 33 17 chr4 26592819 26592939 -157695723 - MER5A DNA MER1_type 0 189 68 321 100 0 0 chr4 26592954 26593004 -157695658 + (TG)n Simple_repeat Simple_repeat 1 50 0 2557 144 2 0 chr4 26593045 26593448 -157695214 - L1PA16 LINE L1 -3 6163 5760 194 171 24 24 chr4 26593448 26593489 -157695173 + MER5A DNA MER1_type 127 167 -22 275 245 0 0 chr4 26595629 26595682 -157692980 + AluJ/monomer SINE Alu 1 53 -250 301 158 50 45 chr4 26595815 26595899 -157692763 + L1MD3 LINE L1 7676 7963 -29 2047 176 24 52 chr4 26595955 26596489 -157692173 + LTR27 LTR ERV1 12 501 0 * 6382 128 29 29 chr4 26596489 26596568 -157692094 + Tigger3b DNA MER2_type 44 122 -2906 1956 159 130 16 chr4 26596568 26596952 -157691710 + MSTA LTR MaLR 1 428 0 6382 128 29 29 chr4 26596952 26598061 -157690601 + Tigger3b DNA MER2_type 122 1231 0 286 324 43 53 chr4 26598125 26598332 -157690330 - L3 LINE CR1 -30 1547 1343 4582 66 34 0 chr4 26598478 26599068 -157689594 - LTR66 LTR ERVL 0 610 1 914 86 91 3 chr4 26599068 26599305 -157689357 - HERVL66 LTR ERVL 0 4329 3988 6792 45 15 0 chr4 26599324 26600196 -157688466 - L1PA5 LINE L1 -1 6153 5269 2286 38 0 0 chr4 26600194 26600485 -157688177 + L1PA5 LINE L1 4968 5258 -888 * 2634 140 12 2 chr4 26600485 26600913 -157687749 - HERVL66 LTR ERVL -329 4000 3569 * 4535 111 31 7 chr4 26600911 26601593 -157687069 - HERVL66 LTR ERVL -977 3352 2655 2451 89 40 0 chr4 26601574 26601922 -157686740 - HERVL66 LTR ERVL -2532 1797 1436 * 7669 90 33 0 chr4 26601922 26603016 -157685646 - HERVL66 LTR ERVL -3199 1130 1 4428 65 41 5 chr4 26603016 26603605 -157685057 - LTR66 LTR ERVL 0 610 1 322 104 0 0 chr4 26603605 26603653 -157685009 - MLT1H LTR MaLR -17 373 326 2313 120 2 40 chr4 26603654 26604054 -157684608 - Tigger2 DNA MER2_type 0 2718 2334 297 0 0 0 chr4 26604095 26604128 -157684534 + (CA)n Simple_repeat Simple_repeat 2 34 0 303 164 0 0 chr4 26604168 26604223 -157684439 + MLT2A2 LTR ERVL 399 453 0 3066 111 6 8 chr4 26604223 26604702 -157683960 + HERVL-A2 LTR ERVL 1 478 -5176 6094 100 28 1 chr4 26604802 26605711 -157682951 + HERVL-A2 LTR ERVL 642 1574 -4080 228 67 0 0 chr4 26605711 26605741 -157682921 + (TA)n Simple_repeat Simple_repeat 2 31 0 1187 42 0 0 chr4 26605745 26605889 -157682773 + L1PA7 LINE L1 6008 6151 -3 183 367 58 36 chr4 26605973 26606112 -157682550 - L3 LINE CR1 -1379 198 57 333 277 18 27 chr4 26606441 26606553 -157682109 - MIR SINE MIR -55 207 97 1392 217 46 73 chr4 26606806 26607286 -157681376 + MLT1C LTR MaLR 1 467 0 198 264 0 19 chr4 26607473 26607526 -157681136 + L2 LINE L2 3216 3267 -5 23 54 0 0 chr4 26607644 26607681 -157680981 + AT_rich Low_complexity Low_complexity 1 37 0 203 373 85 0 chr4 26608301 26608419 -157680243 + L2 LINE L2 3182 3309 -4 230 259 12 35 chr4 26608796 26608881 -157679781 - MLT1J LTR MaLR -49 462 380 341 288 96 59 chr4 26609439 26609710 -157678952 - MLT1H LTR MaLR -191 358 78 2582 157 7 5 chr4 26610057 26610484 -157678178 + MSTA LTR MaLR 1 428 0 1349 302 88 54 chr4 26612043 26612874 -157675788 + L1MEc LINE L1 58 859 -5537 2007 134 7 7 chr4 26612874 26613164 -157675498 + AluSx SINE Alu 1 290 -22 1349 302 88 54 chr4 26613164 26613186 -157675476 + L1MEc LINE L1 859 879 -5517 518 183 0 10 chr4 26613186 26613290 -157675372 + U13 snRNA snRNA 1 103 -1 1349 302 88 54 chr4 26613290 26613587 -157675075 + L1MEc LINE L1 879 1164 -5232 1544 203 58 0 chr4 26613587 26613882 -157674780 + AluJb SINE Alu 1 312 0 1349 302 88 54 chr4 26613882 26614627 -157674035 + L1MEc LINE L1 1164 2020 -4376 340 200 0 0 chr4 26614644 26614709 -157673953 + L1PA12 LINE L1 1 65 -7516 7305 209 28 8 chr4 26614720 26617926 -157670736 + L1PA12 LINE L1 201 4035 -3549 4628 101 55 1 chr4 26617923 26618649 -157670013 + L1PA14 LINE L1 5396 6160 -1 * 1347 282 88 49 chr4 26618654 26619030 -157669632 + L1MEc LINE L1 2034 2394 -3821 2144 123 10 3 chr4 26619030 26619332 -157669330 + AluSc SINE Alu 1 304 -5 1347 282 88 49 chr4 26619332 26620080 -157668582 + L1MEc LINE L1 2394 3162 -3053 759 332 32 45 chr4 26620083 26620701 -157667961 + L1PA13 LINE L1 788 1397 -6177 297 293 0 0 chr4 26620786 26620885 -157667777 + L1PA13 LINE L1 2084 2182 -5399 7496 125 22 37 chr4 26621282 26623007 -157665655 + L1P4 LINE L1 12 1666 -4480 1979 105 39 20 chr4 26623007 26623445 -157665217 + L1P4 LINE L1 5152 5597 -569 590 267 187 30 chr4 26623554 26623917 -157664745 + MLT1H LTR MaLR 130 549 0 243 278 0 0 chr4 26623917 26623979 -157664683 - MLT1I LTR MaLR -265 144 83 207 220 0 0 chr4 26624143 26624193 -157664469 + GA-rich Low_complexity Low_complexity 3 52 0 1226 136 62 138 chr4 26624242 26624661 -157664001 - MLT1B LTR MaLR 0 390 4 1617 162 90 21 chr4 26625255 26625589 -157663073 - MLT1D LTR MaLR -148 357 1 915 167 68 0 chr4 26626857 26627049 -157661613 + L1P LINE L1 2244 2448 -3698 262 321 52 0 chr4 26627573 26627707 -157660955 - L1MEd LINE L1 -5751 368 228 1733 180 0 3 chr4 26628189 26628472 -157660190 + AluJo SINE Alu 7 288 -24 216 0 0 0 chr4 26628484 26628496 -157660166 + (CA)n Simple_repeat Simple_repeat 1 36 0 216 0 0 0 chr4 26628496 26628520 -157660142 + (CA)n Simple_repeat Simple_repeat 2 25 0 1303 280 80 22 chr4 26628640 26628699 -157659963 + L1ME3 LINE L1 2981 3035 -3111 387 0 0 0 chr4 26628699 26628742 -157659920 + (TA)n Simple_repeat Simple_repeat 2 44 0 1303 280 80 22 chr4 26628742 26629676 -157658986 + L1ME3 LINE L1 3035 4031 -2115 3933 206 70 12 chr4 26629695 26630604 -157658058 + L1 LINE L1 3714 4691 -1455 1641 192 20 47 chr4 26630604 26631005 -157657657 + MLT1B LTR MaLR 1 390 0 3933 206 70 12 chr4 26631005 26631117 -157657545 + L1 LINE L1 4691 4795 -1351 848 257 156 15 chr4 26631124 26632118 -157656544 + L1ME3 LINE L1 4961 6148 -14 641 163 23 47 chr4 26632353 26632525 -157656137 + L1MA5 LINE L1 4393 4560 -1586 1177 226 137 96 chr4 26632526 26633279 -157655383 + LTR1B LTR ERV1 1 784 -42 3366 156 41 11 chr4 26633507 26634465 -157654197 + L1MA5 LINE L1 4682 5651 -646 1732 144 131 31 chr4 26634468 26634850 -157653812 + MSTA LTR MaLR 9 428 0 3429 137 23 20 chr4 26634850 26635492 -157653170 + L1MA5 LINE L1 5647 6290 -10 553 236 13 45 chr4 26635509 26635666 -157652996 - MLT2B1 LTR ERVL -7 513 362 676 236 13 13 chr4 26636064 26636221 -157652441 + MLT1J2 LTR MaLR 40 196 -254 4030 96 4 0 chr4 26636584 26637134 -157651528 + MER41A LTR ERV1 1 552 -2 5215 117 53 1 chr4 26637223 26638030 -157650632 + MER41A-int LTR ERV1 3 851 -5095 * 8984 134 134 62 chr4 26638021 26638446 -157650216 + MER41A-int LTR ERV1 1550 1943 -5594 2298 106 0 3 chr4 26638446 26638757 -157649905 + AluSg SINE Alu 1 310 0 8984 134 134 62 chr4 26638757 26638978 -157649684 + MER41A-int LTR ERV1 1943 2147 -5390 237 286 0 0 chr4 26638978 26639034 -157649628 + tRNA-Glu-GAG tRNA tRNA 7 62 -13 8984 134 134 62 chr4 26639034 26640340 -157648322 + MER41A-int LTR ERV1 2147 3703 -3834 6759 96 38 0 chr4 26640340 26641389 -157647273 - L1P LINE L1 -1116 5030 3942 492 102 82 0 chr4 26642350 26642497 -157646165 + (TA)n Simple_repeat Simple_repeat 1 159 0 288 326 109 51 chr4 26643144 26643748 -157644914 + L2 LINE L2 2152 2790 -524 3049 92 8 0 chr4 26644043 26644524 -157644138 - L1P LINE L1 -2876 3270 2786 1767 122 14 0 chr4 26644512 26644800 -157643862 + L1P LINE L1 2491 2782 -3364 * 11815 98 44 9 chr4 26644806 26647223 -157641439 + MER41A-int LTR ERV1 2675 5944 -2 4088 68 18 4 chr4 26647223 26647769 -157640893 + MER41A LTR ERV1 1 554 0 3567 106 21 59 chr4 26647770 26648394 -157640268 - MER4A LTR ERV1 0 600 1 182 84 21 95 chr4 26649387 26649482 -157639180 + (TATAA)n Simple_repeat Simple_repeat 4 91 0 1452 194 15 7 chr4 26650212 26650485 -157638177 + AluJo SINE Alu 1 275 -37 243 0 0 0 chr4 26650494 26650521 -157638141 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 196 379 40 23 chr4 26650686 26650860 -157637802 + MIR3 SINE MIR 29 205 -3 1700 82 9 0 chr4 26654400 26654631 -157634031 + THE1C LTR MaLR 143 375 0 9988 120 48 4 chr4 26654631 26656144 -157632518 + THE1C-int LTR MaLR 1 1580 0 2521 87 50 8 chr4 26656147 26656504 -157632158 + THE1C LTR MaLR 4 375 0 408 291 100 42 chr4 26656810 26657823 -157630839 + L1M4 LINE L1 3522 4592 -1554 1539 232 52 52 chr4 26658083 26658588 -157630074 - MLT1D LTR MaLR 0 505 1 21 0 0 0 chr4 26658588 26658609 -157630053 + AT_rich Low_complexity Low_complexity 1 21 0 344 171 24 49 chr4 26658619 26658701 -157629961 - MER69 DNA AcHobo 0 2526 2447 362 216 0 144 chr4 26658701 26658854 -157629808 - MER69 DNA AcHobo -2391 135 5 240 35 0 0 chr4 26660481 26660510 -157628152 + (TG)n Simple_repeat Simple_repeat 2 30 0 7916 136 11 4 chr4 26660526 26662764 -157625898 - L1PA11 LINE L1 -41 6133 3879 412 350 61 52 chr4 26662861 26663187 -157625475 - L2 LINE L2 -1 3271 2939 755 247 27 45 chr4 26663187 26663410 -157625252 - MER20 DNA MER1_type 0 219 1 412 350 61 52 chr4 26663410 26663509 -157625153 - L2 LINE L2 -333 2939 2842 193 292 97 35 chr4 26663527 26663640 -157625022 + MIR SINE MIR 112 231 -31 1128 262 95 46 chr4 26664536 26665010 -157623652 - MLT1D LTR MaLR -4 501 5 259 348 18 9 chr4 26665347 26665459 -157623203 - MIR SINE MIR -70 192 80 378 42 0 0 chr4 26665674 26665722 -157622940 + (CA)n Simple_repeat Simple_repeat 1 48 0 193 195 138 46 chr4 26665759 26665846 -157622816 - L3 LINE CR1 -906 671 577 709 310 15 55 chr4 26666803 26667129 -157621533 + L2 LINE L2 3001 3313 0 3171 65 8 5 chr4 26667426 26667921 -157620741 + L1P3 LINE L1 5200 5695 -477 1997 116 0 11 chr4 26668516 26668836 -157619826 - AluSx SINE Alu 0 317 1 388 327 35 30 chr4 26670074 26670276 -157618386 - MIR SINE MIR -12 250 48 219 346 10 10 chr4 26670750 26670854 -157617808 + L2 LINE L2 2890 2993 -279 395 361 77 52 chr4 26671031 26671397 -157617265 + L2 LINE L2 2890 3264 -8 251 308 26 68 chr4 26671777 26671894 -157616768 - MIR SINE MIR -76 132 21 22 0 0 0 chr4 26672269 26672291 -157616371 + AT_rich Low_complexity Low_complexity 1 22 0 250 351 21 0 chr4 26672360 26672454 -157616208 - L2 LINE L2 -10 3303 3208 456 310 157 48 chr4 26672979 26673482 -157615180 + L2 LINE L2 2420 2977 -337 570 308 73 49 chr4 26674189 26674436 -157614226 + MIR SINE MIR 9 261 -1 2227 131 13 40 chr4 26674791 26675165 -157613497 + THE1B LTR MaLR 1 364 0 11093 105 17 2 chr4 26675165 26676722 -157611940 + THE1B-int LTR MaLR 1 1580 0 330 25 0 0 chr4 26676722 26676762 -157611900 + THE1B LTR MaLR 1 40 -335 * 873 144 17 46 chr4 26676757 26676930 -157611732 + THE1B LTR MaLR 197 364 0 186 231 176 11 chr4 26677460 26677551 -157611111 + MER5C DNA MER1_type 178 283 -41 269 222 111 65 chr4 26677563 26677671 -157610991 - MIR SINE MIR -19 243 131 282 125 0 0 chr4 26677887 26677935 -157610727 + (CA)n Simple_repeat Simple_repeat 2 49 0 348 239 0 0 chr4 26677964 26678035 -157610627 - L2 LINE L2 -1 3312 3242 429 233 8 54 chr4 26678636 26678765 -157609897 - L2 LINE L2 0 3313 3191 2070 140 0 19 chr4 26678832 26679146 -157609516 + AluSx SINE Alu 1 308 -4 22361 29 0 0 chr4 26679150 26682630 -157606032 + L1PA3 LINE L1 2679 6152 -3 218 225 0 0 chr4 26682789 26682829 -157605833 - L2 LINE L2 -253 3060 3021 313 179 26 26 chr4 26684461 26684539 -157604123 - MLT1J LTR MaLR -18 493 416 434 69 0 42 chr4 26684691 26684763 -157603899 - L1MC2 LINE L1 -11 6333 6265 444 255 10 75 chr4 26684923 26685123 -157603539 + L2 LINE L2 3127 3313 0 1987 137 8 48 chr4 26686564 26686937 -157601725 + MER34B LTR ERV1 1 358 -207 727 39 19 0 chr4 26687394 26687497 -157601165 + (TAGA)n Simple_repeat Simple_repeat 2 106 0 2487 58 0 6 chr4 26688494 26688807 -157599855 + AluY SINE Alu 1 311 0 23 0 0 0 chr4 26689462 26689485 -157599177 + AT_rich Low_complexity Low_complexity 1 23 0 6396 46 15 2 chr4 26689825 26690628 -157598034 + L1PA7 LINE L1 5341 6153 -1 378 309 109 51 chr4 26690639 26690914 -157597748 - L2 LINE L2 -1548 1766 1476 347 228 49 74 chr4 26690940 26691102 -157597560 - L1M4 LINE L1 -1827 4319 4162 226 296 194 9 chr4 26691739 26691847 -157596815 + L2 LINE L2 3124 3251 -21 422 250 95 43 chr4 26692006 26692238 -157596424 - MIR SINE MIR 0 262 19 2306 112 0 0 chr4 26692811 26693114 -157595548 - AluSx SINE Alu -9 303 1 308 374 77 32 chr4 26693274 26693520 -157595142 + MIR SINE MIR 6 262 0 251 337 151 6 chr4 26693516 26693682 -157594980 + MIR SINE MIR 68 257 -5 * 306 326 137 33 chr4 26695201 26695425 -157593237 - MIR SINE MIR -15 247 3 455 303 58 11 chr4 26695450 26695638 -157593024 + MIR SINE MIR 11 207 -55 225 371 0 0 chr4 26695777 26695866 -157592796 - MIR3 SINE MIR -9 199 111 309 267 86 91 chr4 26696215 26696402 -157592260 - MIR3 SINE MIR -19 189 4 382 341 46 102 chr4 26696868 26696960 -157591702 - L2 LINE L2 -1 3271 3175 2104 99 0 0 chr4 26696960 26697232 -157591430 - AluSc SINE Alu -2 307 36 382 341 46 102 chr4 26697232 26697351 -157591311 - L2 LINE L2 -97 3175 3082 2647 97 14 6 chr4 26697351 26697712 -157590950 + THE1B LTR MaLR 1 364 0 382 341 46 102 chr4 26697712 26697824 -157590838 - L2 LINE L2 -190 3082 2965 285 218 141 0 chr4 26697990 26698068 -157590594 - MIR SINE MIR -2 260 172 750 261 89 37 chr4 26698535 26698988 -157589674 - L1ME LINE L1 -368 5794 5317 852 297 141 31 chr4 26699019 26699828 -157588834 - L1ME LINE L1 -867 5279 4382 298 184 0 0 chr4 26699946 26699995 -157588667 - MIR SINE MIR -109 153 105 2444 183 25 2 chr4 26699998 26700485 -157588177 + L1MB1 LINE L1 5658 6155 -13 315 316 143 0 chr4 26700519 26700617 -157588045 - MIR SINE MIR -148 114 3 201 74 0 0 chr4 26701482 26701509 -157587153 + (CA)n Simple_repeat Simple_repeat 2 28 0 240 390 95 0 chr4 26703061 26703166 -157585496 - L2 LINE L2 -42 3230 3116 1733 153 10 32 chr4 26703243 26703556 -157585106 + AluJo SINE Alu 1 306 -6 364 222 25 0 chr4 26703630 26703711 -157584951 - MIR SINE MIR -83 179 97 339 287 93 9 chr4 26704333 26704441 -157584221 - L2 LINE L2 -3 3269 3153 1784 173 0 23 chr4 26705044 26705351 -157583311 + AluJo SINE Alu 1 300 -12 392 169 48 0 chr4 26705528 26705611 -157583051 - L1MA5 LINE L1 -6 6294 6208 4579 137 46 20 chr4 26705636 26706485 -157582177 - L1MA4 LINE L1 -176 6124 5254 407 155 14 0 chr4 26706561 26706632 -157582030 - MER58 DNA MER1_type -21 2399 2328 2418 76 0 0 chr4 26706777 26707080 -157581582 + AluY SINE Alu 1 303 -8 1843 251 78 21 chr4 26707912 26708883 -157579779 + L1ME3 LINE L1 4960 5996 -166 801 286 64 4 chr4 26709214 26709448 -157579214 + MIR SINE MIR 7 254 -8 314 197 26 0 chr4 26709523 26709599 -157579063 + L1MC4a LINE L1 5876 5953 -1855 1882 150 0 3 chr4 26711113 26711406 -157577256 + AluJb SINE Alu 9 300 -12 21 36 0 0 chr4 26712050 26712078 -157576584 + AT_rich Low_complexity Low_complexity 1 28 0 1222 117 122 19 chr4 26712197 26712411 -157576251 + MER46A DNA MER2_type 1 236 0 205 236 18 18 chr4 26712605 26712660 -157576002 + MIR SINE MIR 65 119 -89 213 65 0 0 chr4 26712864 26712895 -157575767 + (A)n Simple_repeat Simple_repeat 1 31 0 291 325 172 18 chr4 26716176 26716339 -157572323 + MIR SINE MIR 5 192 -70 262 368 26 43 chr4 26717046 26717163 -157571499 - L2 LINE L2 -17 3255 3141 747 265 28 16 chr4 26717185 26717438 -157571224 - MIR SINE MIR -2 260 5 188 194 0 0 chr4 26719826 26719862 -157568800 - L2 LINE L2 0 3313 3278 1196 183 40 37 chr4 26720246 26720519 -157568143 - ORSL DNA AcHobo 0 275 2 1483 129 0 9 chr4 26721472 26721696 -157566966 + AluSg/x SINE Alu 87 308 -4 1938 138 3 28 chr4 26722702 26723022 -157565640 + AluSx SINE Alu 1 312 0 2136 117 7 10 chr4 26724579 26724879 -157563783 + AluSx SINE Alu 1 299 -13 507 257 33 26 chr4 26725730 26725882 -157562780 + MIR SINE MIR 102 254 -8 368 279 126 16 chr4 26726274 26726464 -157562198 - L2 LINE L2 -9 3304 3094 232 330 42 17 chr4 26728632 26728750 -157559912 + L2 LINE L2 2667 2787 -527 1502 240 48 5 chr4 26729039 26729456 -157559206 - Zaphod DNA AcHobo -1 4030 3596 721 197 145 15 chr4 26729589 26729858 -157558804 - Zaphod DNA AcHobo -3204 827 524 588 331 112 60 chr4 26730028 26730217 -157558445 - L2 LINE L2 -346 2968 2790 2330 99 0 3 chr4 26730217 26730521 -157558141 + AluSx SINE Alu 1 303 -9 588 331 112 60 chr4 26730521 26731127 -157557535 - L2 LINE L2 -524 2790 2118 2061 126 33 0 chr4 26731127 26731428 -157557234 - AluSx SINE Alu -1 311 1 588 331 112 60 chr4 26731428 26731542 -157557120 - L2 LINE L2 -1196 2118 2011 935 214 66 73 chr4 26732276 26732579 -157556083 - MER58B DNA MER1_type -1 340 40 568 161 42 17 chr4 26733209 26733327 -157555335 + MER31-int LTR ERV1 914 1034 -3902 1262 133 0 10 chr4 26734135 26734330 -157554332 - AluSg/x SINE Alu -1 311 119 511 133 0 0 chr4 26734430 26734505 -157554157 + AluS SINE Alu 221 295 -15 183 42 0 0 chr4 26734775 26734799 -157553863 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2077 117 7 10 chr4 26734908 26735208 -157553454 - AluSx SINE Alu -13 299 1 189 0 0 0 chr4 26735595 26735616 -157553046 + (TA)n Simple_repeat Simple_repeat 1 21 0 260 246 14 0 chr4 26735742 26735811 -157552851 + (TA)n Simple_repeat Simple_repeat 1 70 0 26 0 0 0 chr4 26736254 26736280 -157552382 + AT_rich Low_complexity Low_complexity 1 26 0 809 204 41 0 chr4 26736868 26737040 -157551622 + L1PB4 LINE L1 5966 6144 -12 2306 90 0 16 chr4 26737560 26737871 -157550791 + AluSg1 SINE Alu 1 306 -3 2158 110 0 32 chr4 26738494 26738804 -157549858 - AluSx SINE Alu -12 300 1 31 76 0 0 chr4 26738870 26738936 -157549726 + AT_rich Low_complexity Low_complexity 1 66 0 225 338 12 25 chr4 26738943 26739023 -157549639 - MIR SINE MIR -107 155 77 2177 213 25 36 chr4 26740860 26741420 -157547242 + MLT2B3 LTR ERVL 1 554 0 336 267 67 0 chr4 26742729 26742819 -157545843 - MER5A DNA MER1_type -5 184 89 242 318 109 9 chr4 26743142 26743252 -157545410 + L2 LINE L2 3147 3267 -5 1856 70 23 0 chr4 26743871 26744128 -157544534 + L1PA13 LINE L1 5901 6163 0 2420 140 91 56 chr4 26745020 26745556 -157543106 + MER34B LTR ERV1 11 565 0 1913 135 44 0 chr4 26746061 26746357 -157542305 - AluSx SINE Alu -3 309 1 298 258 103 10 chr4 26746669 26746766 -157541896 - MIR SINE MIR -128 134 29 198 0 0 0 chr4 26747062 26747084 -157541578 + (TTG)n Simple_repeat Simple_repeat 3 24 0 2034 140 0 3 chr4 26747086 26747372 -157541290 - AluSx SINE Alu -27 285 1 259 269 76 20 chr4 26750181 26750348 -157538314 + MLT1K LTR MaLR 303 517 -71 303 313 133 0 chr4 26750371 26750499 -157538163 - MIR SINE MIR -64 198 54 261 314 37 95 chr4 26750802 26751098 -157537564 + L2 LINE L2 2690 2968 -346 2106 83 50 0 chr4 26751203 26751481 -157537181 + AluSx SINE Alu 2 293 -19 421 271 7 83 chr4 26752705 26752849 -157535813 - MLT1L LTR MaLR 0 615 456 2145 126 0 7 chr4 26753247 26753540 -157535122 + AluSx SINE Alu 6 296 -16 527 276 104 40 chr4 26753858 26754184 -157534478 + L2 LINE L2 2967 3313 0 185 252 258 38 chr4 26754230 26754389 -157534273 + L2 LINE L2 2155 2348 -966 282 186 34 0 chr4 26754414 26754473 -157534189 + MER5A DNA MER1_type 126 186 -3 208 125 313 0 chr4 26754767 26754815 -157533847 + L2 LINE L2 3206 3268 -4 23 0 0 0 chr4 26755072 26755095 -157533567 + AT_rich Low_complexity Low_complexity 1 23 0 672 260 79 20 chr4 26755486 26755740 -157532922 - LTR16C LTR ERVL -35 456 188 1838 91 88 0 chr4 26755941 26756204 -157532458 + L1PA14 LINE L1 5865 6150 -11 217 238 0 0 chr4 26757295 26757337 -157531325 + (CATA)n Simple_repeat Simple_repeat 3 44 0 1375 136 30 27 chr4 26757841 26758080 -157530582 + MSTA LTR MaLR 166 426 -2 230 159 0 143 chr4 26758175 26758238 -157530424 + MER58B DNA MER1_type 171 224 -117 401 184 149 35 chr4 26758241 26758355 -157530307 + MER58B DNA MER1_type 197 323 -18 390 306 32 0 chr4 26759404 26759528 -157529134 - MIR SINE MIR -128 134 7 370 265 43 26 chr4 26759877 26759994 -157528668 + MIR SINE MIR 48 166 -96 654 99 0 0 chr4 26760116 26760207 -157528455 + L1PB1 LINE L1 5883 5973 -178 1551 70 25 0 chr4 26760208 26760409 -157528253 + AluYa5 SINE Alu 1 206 -105 473 279 137 39 chr4 26760732 26760965 -157527697 - MLT1L LTR MaLR -34 581 326 192 40 0 0 chr4 26761018 26761043 -157527619 + (CA)n Simple_repeat Simple_repeat 1 25 0 530 174 6 116 chr4 26761099 26761215 -157527447 + MER3 DNA MER1_type 17 63 -99 2592 61 0 0 chr4 26761215 26761526 -157527136 + AluY SINE Alu 1 311 0 530 174 6 116 chr4 26761526 26761581 -157527081 + MER3 DNA MER1_type 63 122 -40 1601 178 25 4 chr4 26761590 26761871 -157526791 + AluJo SINE Alu 6 292 -20 696 101 0 10 chr4 26761912 26762011 -157526651 + MER4A LTR ERV1 1 98 -566 1167 110 8 12 chr4 26762011 26762291 -157526371 + MER4A LTR ERV1 261 664 0 337 276 19 0 chr4 26762714 26762819 -157525843 + (CATATA)n Simple_repeat Simple_repeat 4 110 0 788 238 0 0 chr4 26763815 26763982 -157524680 - FRAM SINE Alu 0 167 1 17315 125 18 23 chr4 26763982 26765129 -157523533 - Tigger4(Zombi) DNA MER2_type -35 2696 1544 2330 103 0 3 chr4 26765129 26765429 -157523233 - AluSq SINE Alu -14 299 1 17315 125 18 23 chr4 26765429 26766553 -157522109 - Tigger4(Zombi) DNA MER2_type -1187 1544 440 2435 83 0 6 chr4 26766553 26766865 -157521797 - AluSg SINE Alu 0 310 1 17315 125 18 23 chr4 26766865 26767299 -157521363 - Tigger4(Zombi) DNA MER2_type -2291 440 5 557 245 92 5 chr4 26767530 26767714 -157520948 - MER3 DNA MER1_type -9 200 1 1432 302 138 24 chr4 26767875 26768497 -157520165 + MER115 DNA AcHobo 1 693 0 259 257 7 29 chr4 26769208 26769344 -157519318 + (CGG)n Simple_repeat Simple_repeat 2 134 0 25 65 0 0 chr4 26769468 26769514 -157519148 + GC_rich Low_complexity Low_complexity 1 46 0 32 26 0 0 chr4 26769645 26769684 -157518978 + GC_rich Low_complexity Low_complexity 1 39 0 860 88 0 0 chr4 26769726 26769840 -157518822 + AluY SINE Alu 196 309 -2 1291 93 60 0 chr4 26769840 26770022 -157518640 + L1PB1 LINE L1 5959 6151 0 342 277 80 11 chr4 26770436 26770624 -157518038 + L1ME4a LINE L1 5705 5905 -216 2157 132 0 10 chr4 26770742 26771052 -157517610 - AluSq SINE Alu -6 307 1 253 269 140 54 chr4 26771399 26771492 -157517170 + MIR3 SINE MIR 83 183 -25 451 240 62 73 chr4 26772685 26772877 -157515785 + MLT1D LTR MaLR 48 237 -268 6521 55 1 9 chr4 26773146 26773267 -157515395 + L1PA7 LINE L1 5366 5486 -668 2441 76 0 0 chr4 26773267 26773570 -157515092 + AluY SINE Alu 1 303 -8 6521 55 1 9 chr4 26773570 26774227 -157514435 + L1PA7 LINE L1 5486 6138 -16 395 219 47 29 chr4 26774243 26774382 -157514280 + L1MB4 LINE L1 5299 5448 -714 607 207 0 41 chr4 26774477 26774634 -157514028 + FLAM_A SINE Alu 1 152 0 266 235 10 61 chr4 26774644 26774742 -157513920 + L1MB4 LINE L1 5592 5684 -2124 227 276 30 75 chr4 26774762 26774961 -157513701 + L1MB4 LINE L1 5679 5868 -1940 870 158 7 0 chr4 26774999 26775138 -157513524 + FRAM SINE Alu 20 159 -17 839 194 61 15 chr4 26775480 26775676 -157512986 + MER58B DNA MER1_type 31 235 -106 588 204 19 0 chr4 26775805 26775908 -157512754 + MER58B DNA MER1_type 237 341 0 1622 181 0 29 chr4 26776459 26776768 -157511894 + AluJo SINE Alu 1 300 -12 273 302 26 35 chr4 26776768 26776884 -157511778 - MIR SINE MIR -92 170 56 570 323 91 36 chr4 26776959 26777343 -157511319 + LTR16B LTR ERVL 40 444 -20 227 146 83 0 chr4 26777830 26777878 -157510784 + HsTC2 DNA Tc2 248 299 -1599 * 445 275 127 54 chr4 26777851 26778182 -157510480 + HsTC2 DNA Tc2 471 825 -1073 278 238 43 108 chr4 26778214 26778399 -157510263 + L1MC4 LINE L1 7870 8042 0 2224 124 0 0 chr4 26778408 26778707 -157509955 + AluSx SINE Alu 1 299 -13 302 344 36 36 chr4 26778965 26779160 -157509502 - L1MEd LINE L1 -4971 1148 954 1647 147 102 0 chr4 26779175 26779440 -157509222 - AluSx SINE Alu -20 292 1 270 227 41 52 chr4 26779616 26779713 -157508949 - HAL1 LINE L1 -1608 899 804 317 339 40 16 chr4 26780812 26780936 -157507726 + MIR SINE MIR 11 137 -125 1851 169 89 13 chr4 26781342 26781655 -157507007 - MER1B DNA MER1_type 0 337 1 726 224 177 10 chr4 26782194 26782386 -157506276 + MER58A DNA MER1_type 1 224 0 341 284 71 58 chr4 26782394 26782549 -157506113 + MER5B DNA MER1_type 1 157 -21 842 202 80 28 chr4 26783004 26783092 -157505570 + L1MB4 LINE L1 5956 6038 -142 2246 130 47 39 chr4 26783092 26783453 -157505209 - THE1B LTR MaLR 0 364 1 842 202 80 28 chr4 26783453 26783577 -157505085 + L1MB4 LINE L1 6038 6179 -1 315 255 75 0 chr4 26783962 26784056 -157504606 + MER94 DNA DNA 1 101 -33 680 183 8 15 chr4 26784888 26785019 -157503643 - MLT1E3 LTR MaLR 0 624 495 1146 179 145 34 chr4 26785325 26785502 -157503160 - MER58D DNA MER1_type -2034 386 230 2282 186 33 15 chr4 26785502 26785960 -157502702 + MER31B LTR ERV1 1 466 0 1146 179 145 34 chr4 26785960 26786107 -157502555 - MER58D DNA MER1_type -2190 230 26 557 255 57 81 chr4 26786509 26786807 -157501855 - L2 LINE L2 0 3313 3023 1694 183 3 10 chr4 26787056 26787351 -157501311 - AluJo SINE Alu -19 293 1 298 208 39 52 chr4 26787713 26787778 -157500884 + MER5A DNA MER1_type 110 175 -14 4271 95 7 35 chr4 26787778 26788008 -157500654 + MER41A LTR ERV1 1 236 -318 2464 64 0 7 chr4 26788008 26788306 -157500356 + AluSg SINE Alu 1 296 -14 4271 95 7 35 chr4 26788306 26788645 -157500017 + MER41A LTR ERV1 236 554 0 298 208 39 52 chr4 26788645 26788656 -157500006 + MER5A DNA MER1_type 175 185 -4 1868 226 27 16 chr4 26788936 26789378 -157499284 - MER44D DNA MER2_type 0 605 104 578 191 96 0 chr4 26789378 26789493 -157499169 + AluJ SINE Alu 2 127 -185 442 94 341 24 chr4 26789499 26789584 -157499078 - MER44D DNA MER2_type -591 114 3 681 192 79 98 chr4 26789585 26789712 -157498950 + L1MC5 LINE L1 7011 7139 -822 2402 61 0 3 chr4 26789712 26790007 -157498655 + AluY SINE Alu 1 294 -17 681 192 79 98 chr4 26790007 26790196 -157498466 + L1MC5 LINE L1 7139 7321 -640 617 321 79 4 chr4 26790290 26790530 -157498132 + MIR SINE MIR 5 262 0 1352 114 283 4 chr4 26791628 26791865 -157496797 + AluSq SINE Alu 1 303 0 1039 181 6 0 chr4 26791884 26792044 -157496618 + AluJ SINE Alu 137 297 -5 1875 132 6 22 chr4 26792044 26792362 -157496300 + AluSq SINE Alu 1 313 0 2089 116 10 0 chr4 26792422 26792715 -157495947 + AluSq SINE Alu 1 296 -17 2459 78 3 0 chr4 26792719 26793025 -157495637 + AluSg SINE Alu 1 307 -3 375 321 51 41 chr4 26793366 26793562 -157495100 - MIR3 SINE MIR -6 202 5 1006 158 6 0 chr4 26793955 26794113 -157494549 - MER46A DNA MER2_type -77 159 1 351 356 84 0 chr4 26794276 26794467 -157494195 + MIR SINE MIR 56 262 0 1229 234 77 56 chr4 26794669 26795217 -157493445 + MLT2B1 LTR ERVL 1 512 -8 180 0 0 0 chr4 26796893 26796913 -157491749 + (A)n Simple_repeat Simple_repeat 1 20 0 256 349 246 0 chr4 26796939 26797065 -157491597 - L2 LINE L2 -13 3259 3103 221 234 195 13 chr4 26797591 26797668 -157490994 - L2 LINE L2 -32 3281 3191 325 264 88 19 chr4 26798810 26798969 -157489693 + MER5B DNA MER1_type 5 174 -4 2034 124 34 0 chr4 26799374 26799665 -157488997 + AluSx SINE Alu 1 301 -11 1881 162 0 0 chr4 26800270 26800574 -157488088 + AluSx SINE Alu 1 304 0 2230 105 0 10 chr4 26800955 26801261 -157487401 + AluY SINE Alu 1 303 -8 22 0 0 0 chr4 26803085 26803107 -157485555 + AT_rich Low_complexity Low_complexity 1 22 0 353 294 64 9 chr4 26803825 26803934 -157484728 + MIR SINE MIR 31 145 -63 21 0 0 0 chr4 26804797 26804818 -157483844 + AT_rich Low_complexity Low_complexity 1 21 0 244 289 174 27 chr4 26805286 26805435 -157483227 + L1MEd LINE L1 447 617 -5502 2259 117 39 25 chr4 26805495 26805854 -157482808 + THE1B LTR MaLR 1 364 0 7578 91 51 55 chr4 26805854 26807114 -157481548 + THE1B-int LTR MaLR 1 1255 -325 1084 73 20 26 chr4 26807214 26807397 -157481265 + THE1B LTR MaLR 182 353 -11 1362 148 15 15 chr4 26807405 26807668 -157480994 + MER6 DNA MER2_type 603 865 0 475 256 15 91 chr4 26807821 26808020 -157480642 + MER5A DNA MER1_type 1 184 -5 287 152 60 7 chr4 26809761 26809912 -157478750 + (TA)n Simple_repeat Simple_repeat 2 160 0 250 244 26 13 chr4 26809944 26810022 -157478640 - MER103 DNA DNA -65 101 23 24 0 0 0 chr4 26813291 26813315 -157475347 + AT_rich Low_complexity Low_complexity 1 24 0 200 245 38 0 chr4 26814135 26814188 -157474474 - L2 LINE L2 -2 3311 3257 1389 149 36 60 chr4 26814381 26814662 -157474000 + AluSg SINE Alu 25 298 -12 944 234 84 33 chr4 26815440 26815807 -157472855 - MER119 DNA MER1_type 0 583 198 268 177 32 56 chr4 26816419 26816509 -157472153 - L1MA10 LINE L1 -33 6301 6191 529 296 13 40 chr4 26816553 26816779 -157471883 + L1ME LINE L1 880 1099 -5848 401 223 176 31 chr4 26816852 26817045 -157471617 + L1ME LINE L1 1247 1467 -5480 528 220 59 17 chr4 26817045 26817244 -157471418 - MER58 DNA MER1_type 0 2420 2 291 225 88 88 chr4 26817245 26817485 -157471177 + L1ME LINE L1 1398 1707 -5240 24 0 0 0 chr4 26819022 26819046 -157469616 + AT_rich Low_complexity Low_complexity 1 24 0 380 263 53 21 chr4 26819119 26819309 -157469353 + L1ME LINE L1 5627 5822 -299 189 0 0 0 chr4 26819671 26819692 -157468970 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 377 215 65 0 chr4 26819741 26819834 -157468828 - L1ME4a LINE L1 -283 5838 5740 1995 111 81 0 chr4 26819935 26820206 -157468456 - AluSq SINE Alu -20 293 1 256 235 0 0 chr4 26821275 26821326 -157467336 + L2 LINE L2 3137 3187 -85 203 188 16 62 chr4 26822298 26822362 -157466300 + GA-rich Low_complexity Low_complexity 5 65 0 26 74 0 0 chr4 26823497 26823551 -157465111 + AT_rich Low_complexity Low_complexity 1 54 0 23 0 0 0 chr4 26824394 26824417 -157464245 + AT_rich Low_complexity Low_complexity 1 23 0 2056 135 3 3 chr4 26824630 26824926 -157463736 + AluSx SINE Alu 1 296 -16 1232 382 10 33 chr4 26825208 26825514 -157463148 + AluSx SINE Alu 1 299 -13 444 231 60 26 chr4 26825657 26825774 -157462888 - L2 LINE L2 0 3313 3193 404 310 9 9 chr4 26826327 26826440 -157462222 + MIR3 SINE MIR 48 160 -48 1728 151 18 18 chr4 26826512 26826796 -157461866 + AluJo SINE Alu 4 287 -25 327 338 44 4 chr4 26826810 26826947 -157461715 - MIR SINE MIR -48 160 18 2196 89 10 3 chr4 26827223 26827515 -157461147 - AluSx SINE Alu -18 294 1 23 0 0 0 chr4 26827515 26827538 -157461124 + AT_rich Low_complexity Low_complexity 1 23 0 195 283 19 0 chr4 26829681 26829734 -157458928 - L2 LINE L2 -14 3299 3246 378 277 45 51 chr4 26829785 26829962 -157458700 - MLT1L LTR MaLR -114 501 326 192 40 0 0 chr4 26830015 26830040 -157458622 + (CA)n Simple_repeat Simple_repeat 1 25 0 417 246 9 9 chr4 26830096 26830210 -157458452 + MER3 DNA MER1_type 17 130 -79 2131 138 0 3 chr4 26830212 26830517 -157458145 + AluSx SINE Alu 1 304 -8 810 147 25 147 chr4 26831916 26832111 -157456551 - LTR32 LTR ERVL -2 469 306 2361 87 0 6 chr4 26832111 26832423 -157456239 + AluSg SINE Alu 1 310 0 810 147 25 147 chr4 26832423 26832465 -157456197 - LTR32 LTR ERVL -165 306 261 1105 183 24 53 chr4 26832508 26832619 -157456043 - LTR32 LTR ERVL -218 253 140 2772 10 0 0 chr4 26832619 26832923 -157455739 + AluY SINE Alu 1 304 -7 1105 183 24 53 chr4 26832923 26833057 -157455605 - LTR32 LTR ERVL -331 140 15 194 239 22 0 chr4 26833063 26833109 -157455553 + L2 LINE L2 1511 1557 -1757 372 313 109 30 chr4 26833109 26833502 -157455160 + L2 LINE L2 1815 2238 -1076 2267 120 0 13 chr4 26834775 26835091 -157453571 - AluSx SINE Alu 0 312 1 1092 203 77 81 chr4 26835314 26835754 -157452908 + MLT1C LTR MaLR 1 467 0 195 261 134 83 chr4 26835825 26835982 -157452680 + MIR3 SINE MIR 3 167 -41 2088 119 0 31 chr4 26836028 26836346 -157452316 - AluSq SINE Alu -4 309 2 1099 210 89 46 chr4 26836738 26837086 -157451576 + MLT1A1 LTR MaLR 1 363 -2 2125 124 0 0 chr4 26837678 26837988 -157450674 + AluSg SINE Alu 1 310 0 1631 197 3 10 chr4 26838413 26838712 -157449950 - AluJo SINE Alu -15 297 1 557 240 120 20 chr4 26839055 26839305 -157449357 + MER110A LTR ERV1 171 445 -23 522 228 30 46 chr4 26839611 26839808 -157448854 + L1MC5 LINE L1 7726 7919 -42 1539 178 7 21 chr4 26839921 26840202 -157448460 + AluJb SINE Alu 1 277 -35 185 62 0 31 chr4 26840202 26840234 -157448428 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 894 233 0 5 chr4 26840501 26840690 -157447972 - MER58A DNA MER1_type 0 224 37 825 283 10 5 chr4 26840716 26840921 -157447741 + MIR SINE MIR 21 226 -36 374 274 110 71 chr4 26841649 26841871 -157446791 - MIR SINE MIR -28 234 3 351 351 140 36 chr4 26841911 26842247 -157446415 - L3 LINE CR1 -1196 381 11 2331 98 0 0 chr4 26842373 26842669 -157445993 - AluSx SINE Alu -16 296 1 1260 295 63 25 chr4 26843653 26844288 -157444374 - L2 LINE L2 0 3313 2654 1062 285 143 18 chr4 26844289 26844728 -157443934 - MLT1E LTR MaLR -3 590 97 507 141 11 0 chr4 26844728 26844820 -157443842 + L1MA9 LINE L1 5731 5823 -345 1023 90 0 0 chr4 26844824 26844957 -157443705 + AluSp/q SINE Alu 179 311 -2 1879 175 9 0 chr4 26844964 26845302 -157443360 + L1PB4 LINE L1 5813 6153 -3 1523 205 55 41 chr4 26845318 26845777 -157442885 + L1MA9 LINE L1 5814 6278 -34 352 253 11 21 chr4 26845781 26845876 -157442786 - MLT1E LTR MaLR -485 108 15 969 303 22 25 chr4 26846012 26846379 -157442283 - L2 LINE L2 -766 2548 2183 2048 147 33 14 chr4 26846494 26846862 -157441800 - THE1C LTR MaLR 0 375 1 8442 128 80 8 chr4 26846862 26848334 -157440328 - THE1C-int LTR MaLR 0 1580 2 2058 159 24 24 chr4 26848335 26848706 -157439956 - THE1C LTR MaLR 0 375 5 1590 228 37 3 chr4 26848713 26849038 -157439624 + MLT1A1 LTR MaLR 28 363 -2 1392 298 80 5 chr4 26849148 26849561 -157439101 + MER70A LTR ERVL 4 447 -25 2363 90 10 0 chr4 26849745 26850046 -157438616 - AluSp SINE Alu -8 305 2 282 339 123 40 chr4 26850067 26850392 -157438270 + L2 LINE L2 2130 2481 -833 360 0 0 0 chr4 26850637 26850677 -157437985 + (T)n Simple_repeat Simple_repeat 1 40 0 23 0 0 0 chr4 26850899 26850922 -157437740 + AT_rich Low_complexity Low_complexity 1 23 0 2126 133 3 0 chr4 26850922 26851224 -157437438 - AluSx SINE Alu -9 303 1 23 0 0 0 chr4 26851347 26851370 -157437292 + AT_rich Low_complexity Low_complexity 1 23 0 2054 160 5 54 chr4 26851604 26851991 -157436671 - MLT1B LTR MaLR 0 390 23 3292 176 32 12 chr4 26852079 26852664 -157435998 - MER6A DNA MER2_type 0 605 9 21 36 0 0 chr4 26852748 26852776 -157435886 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 26852801 26852822 -157435840 + AT_rich Low_complexity Low_complexity 1 21 0 2216 237 42 15 chr4 26853004 26853548 -157435114 - MLT1F1 LTR MaLR -8 559 1 1537 152 47 139 chr4 26853582 26853984 -157434678 - MLT1A1 LTR MaLR 0 365 1 344 171 27 45 chr4 26854084 26854185 -157434477 + MLT1D LTR MaLR 370 497 -8 267 213 62 12 chr4 26856040 26856120 -157432542 - MER41C LTR ERV1 -470 84 1 186 163 70 23 chr4 26856141 26856184 -157432478 - MER5A DNA MER1_type -35 154 110 1694 183 3 10 chr4 26856546 26856841 -157431821 + AluJo SINE Alu 1 293 -19 193 314 58 22 chr4 26857198 26857335 -157431327 + L2 LINE L2 3116 3257 -56 22 0 0 0 chr4 26857601 26857623 -157431039 + GC_rich Low_complexity Low_complexity 1 22 0 402 273 16 16 chr4 26859355 26859476 -157429186 + FRAM SINE Alu 41 161 -15 1876 132 6 22 chr4 26859476 26859794 -157428868 + AluSq SINE Alu 1 313 0 2370 89 0 10 chr4 26859854 26860168 -157428494 + AluSx SINE Alu 1 311 -1 453 169 0 34 chr4 26910678 26910767 -157377895 + Harlequin LTR ERV1 6811 6896 0 4156 39 17 0 chr4 26910767 26911249 -157377413 + LTR2B LTR ERV1 1 490 0 192 274 0 32 chr4 26911856 26911918 -157376744 + MIR SINE MIR 175 234 -28 270 272 11 33 chr4 26913626 26913810 -157374852 + (TTA)n Simple_repeat Simple_repeat 1 180 0 2346 182 98 14 chr4 26913837 26916302 -157372360 + SATR1 Satellite Satellite 1 2671 -99 2539 182 23 8 chr4 26916502 26916980 -157371682 - MER31A LTR ERV1 0 485 1 245 326 12 0 chr4 26917099 26917185 -157371477 + L1MEd LINE L1 467 553 -5566 2215 97 3 3 chr4 26917511 26917801 -157370861 + AluSq SINE Alu 12 301 -12 22 35 0 0 chr4 26918330 26918359 -157370303 + AT_rich Low_complexity Low_complexity 1 29 0 2174 203 104 4 chr4 26918373 26919016 -157369646 + SATR1 Satellite Satellite 1 707 -1 1658 187 58 73 chr4 26919046 26919670 -157368992 + SATR1 Satellite Satellite 1 614 -112 2581 177 4 23 chr4 26919720 26920226 -157368436 + L1 LINE L1 4879 5376 -770 805 168 24 0 chr4 26920226 26920392 -157368270 + L1MA8 LINE L1 6119 6289 -2 2581 177 4 23 chr4 26920392 26920406 -157368256 + L1 LINE L1 5376 5389 -757 219 69 0 0 chr4 26921699 26921728 -157366934 + (TG)n Simple_repeat Simple_repeat 2 30 0 2061 147 3 3 chr4 26922572 26922884 -157365778 - AluSx SINE Alu 0 312 1 286 327 29 0 chr4 26925212 26925316 -157363346 - L2 LINE L2 -5 3267 3161 298 205 77 0 chr4 26925654 26925732 -157362930 - MIR SINE MIR -63 145 62 504 308 6 6 chr4 26925858 26926030 -157362632 + MIR SINE MIR 1 172 -90 200 350 0 10 chr4 26926250 26926353 -157362309 + A-rich Low_complexity Low_complexity 3 104 0 516 133 0 0 chr4 26927513 26927596 -157361066 + (TG)n Simple_repeat Simple_repeat 2 84 0 5520 139 36 41 chr4 26927633 26928607 -157360055 - LTR5 LTR ERVK 0 969 1 817 251 33 5 chr4 26928888 26929103 -157359559 - LTR16C LTR ERVL -17 474 254 4140 31 21 0 chr4 26929116 26929595 -157359067 + LTR2B LTR ERV1 2 490 0 2569 114 5 0 chr4 26929595 26929973 -157358689 + Harlequin LTR ERV1 1 380 -6516 * 4905 61 8 14 chr4 26929968 26930603 -157358059 + Harlequin LTR ERV1 262 892 -6004 * 23161 110 12 16 chr4 26930597 26934654 -157354008 + Harlequin LTR ERV1 1572 6696 -200 415 312 115 36 chr4 26937447 26937990 -157350672 - L2 LINE L2 -3 3310 2722 2323 61 0 0 chr4 26937996 26938273 -157350389 - AluY SINE Alu -6 305 29 2108 123 0 7 chr4 26938283 26938585 -157350077 - AluY SINE Alu -10 301 2 232 213 147 0 chr4 26938594 26938669 -157349993 + LTR33 LTR ERVL 434 519 -2 285 220 209 0 chr4 26939059 26939150 -157349512 - L2 LINE L2 -2 3311 3202 225 0 0 0 chr4 26939574 26939599 -157349063 + (A)n Simple_repeat Simple_repeat 1 25 0 525 324 19 23 chr4 26939666 26939928 -157348734 + MIR SINE MIR 2 262 0 453 328 39 15 chr4 26941461 26941665 -157346997 + MIR SINE MIR 23 231 -31 201 154 0 0 chr4 26942873 26942912 -157345750 + A-rich Low_complexity Low_complexity 1 39 0 463 269 102 43 chr4 26943335 26943659 -157345003 - L1MC4a LINE L1 -1859 5949 5607 2706 78 7 182 chr4 26943659 26944208 -157344454 + MLT2A2 LTR ERVL 1 453 0 347 227 116 51 chr4 26944208 26944444 -157344218 - L1MC4a LINE L1 -507 5614 5351 2380 66 3 13 chr4 26944979 26945282 -157343380 - AluY SINE Alu -11 300 1 675 232 64 54 chr4 26945474 26945771 -157342891 - L2 LINE L2 -5 3308 3009 301 359 62 10 chr4 26945831 26946023 -157342639 + L2 LINE L2 2344 2545 -769 609 246 18 101 chr4 26946304 26946402 -157342260 - MIR SINE MIR -19 243 173 2009 140 3 0 chr4 26946402 26946688 -157341974 - AluJb SINE Alu -25 287 1 609 246 18 101 chr4 26946688 26946817 -157341845 - MIR SINE MIR -89 173 35 236 245 0 0 chr4 26947314 26947363 -157341299 - L2 LINE L2 -4 3268 3220 992 268 27 46 chr4 26947402 26947775 -157340887 - MLT1I LTR MaLR -6 403 38 650 252 111 63 chr4 26947798 26948011 -157340651 - L2 LINE L2 -84 3229 3028 2167 114 0 0 chr4 26948011 26948308 -157340354 + AluSx SINE Alu 1 297 -15 650 252 111 63 chr4 26948308 26948701 -157339961 - L2 LINE L2 -285 3028 2573 538 308 148 39 chr4 26948839 26949277 -157339385 + L2 LINE L2 2828 3313 0 1356 134 49 22 chr4 26949393 26949616 -157339046 - MER30 DNA MER1_type 0 230 2 250 272 16 99 chr4 26950489 26950578 -157338084 - MIR SINE MIR -33 229 162 2240 115 6 10 chr4 26950578 26950891 -157337771 - AluSx SINE Alu 0 312 1 250 272 16 99 chr4 26950891 26951005 -157337657 - MIR SINE MIR -100 162 40 255 283 10 0 chr4 26951075 26951174 -157337488 - LTR16A1 LTR ERVL -30 427 328 1748 195 3 19 chr4 26951195 26951574 -157337088 - L1PB4 LINE L1 -2 6154 5782 220 219 0 0 chr4 26951574 26951615 -157337047 + (TATATG)n Simple_repeat Simple_repeat 6 46 0 237 169 0 0 chr4 26951615 26951674 -157336988 + LTR66 LTR ERVL 394 452 -158 299 95 0 0 chr4 26951679 26951721 -157336941 - L1PB4 LINE L1 -399 5757 5716 311 263 44 44 chr4 26951721 26951835 -157336827 - LTR16A1 LTR ERVL -164 293 180 315 266 49 49 chr4 26952254 26952397 -157336265 - MIR3 SINE MIR -63 145 3 279 79 0 0 chr4 26953324 26953362 -157335300 + (A)n Simple_repeat Simple_repeat 1 38 0 369 293 27 48 chr4 26954526 26954673 -157333989 + MIR SINE MIR 48 191 -71 367 250 146 14 chr4 26955083 26955295 -157333367 - L1ME4a LINE L1 -1 6120 5881 294 319 84 0 chr4 26955496 26955615 -157333047 + L2 LINE L2 3136 3264 -8 232 273 54 132 chr4 26955944 26956149 -157332513 + L2 LINE L2 3030 3218 -54 459 309 73 64 chr4 26957615 26957958 -157330704 + L2 LINE L2 2476 2821 -493 1954 134 42 0 chr4 26958236 26958520 -157330142 - AluSx SINE Alu -14 298 3 558 308 105 22 chr4 26958691 26959359 -157329303 - L1M4 LINE L1 -2377 3769 3047 1340 142 4 18 chr4 26959392 26959617 -157329045 + MER46A DNA MER2_type 15 236 0 251 300 79 7 chr4 26959618 26959758 -157328904 - L1M4 LINE L1 -3120 3026 2877 362 353 77 31 chr4 26959782 26960043 -157328619 - L1M4 LINE L1 -3344 2802 2530 221 57 29 0 chr4 26960261 26960296 -157328366 + (TG)n Simple_repeat Simple_repeat 2 37 0 1190 163 46 15 chr4 26961093 26961337 -157327325 - L1M3 LINE L1 -524 5647 5423 489 164 41 16 chr4 26961414 26961536 -157327126 - MER53 DNA DNA 0 189 65 303 167 0 56 chr4 26961536 26961608 -157327054 - MER53 DNA DNA -84 105 38 2830 168 86 90 chr4 26961608 26962807 -157325855 + LTR12 LTR ERV1 10 590 -124 592 290 86 75 chr4 26962853 26963281 -157325381 + MLT2F LTR ERVL 179 611 -52 338 321 7 50 chr4 26963360 26963500 -157325162 - MIR SINE MIR -113 149 16 195 350 68 49 chr4 26963555 26963718 -157324944 + L3 LINE CR1 1002 1167 -410 537 252 50 7 chr4 26964162 26964301 -157324361 + MIR SINE MIR 75 219 -43 1225 238 141 17 chr4 26964328 26964739 -157323923 - MLT1H LTR MaLR -16 533 72 181 286 0 0 chr4 26964840 26964882 -157323780 + MIR SINE MIR 220 261 -1 295 387 17 0 chr4 26965040 26965159 -157323503 - MIR3 SINE MIR -7 201 81 24 53 0 0 chr4 26965416 26965454 -157323208 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr4 26965701 26965729 -157322933 + AT_rich Low_complexity Low_complexity 1 28 0 191 114 29 0 chr4 26965844 26965879 -157322783 + (TA)n Simple_repeat Simple_repeat 1 36 0 390 214 18 89 chr4 26966151 26966319 -157322343 - L1MB3 LINE L1 -30 6153 5998 * 1338 128 8 51 chr4 26966313 26966570 -157322092 - L1MB3 LINE L1 -151 6032 5787 1296 210 72 24 chr4 26966783 26966881 -157321781 + MLT1A1 LTR MaLR 56 148 -217 2233 127 0 7 chr4 26966881 26967189 -157321473 + AluSg SINE Alu 1 306 -4 1296 210 72 24 chr4 26967189 26967381 -157321281 + MLT1A1 LTR MaLR 148 360 -5 5120 99 31 8 chr4 26967514 26968285 -157320377 - L1PA13 LINE L1 -4 6159 5371 199 244 39 13 chr4 26970075 26970153 -157318509 + MIR SINE MIR 147 226 -36 384 299 29 4 chr4 26970161 26970351 -157318311 + MIR SINE MIR 3 260 -2 2680 121 19 17 chr4 26970420 26970842 -157317820 - MSTA LTR MaLR -5 423 1 2244 173 12 2 chr4 26970914 26971313 -157317349 - MER57A LTR ERV1 0 403 1 266 353 33 87 chr4 26972407 26972682 -157315980 + L2 LINE L2 3010 3269 -3 188 119 0 24 chr4 26972777 26972819 -157315843 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 318 250 45 11 chr4 26973057 26973145 -157315517 - MER103 DNA DNA -8 158 68 357 171 132 47 chr4 26973516 26973645 -157315017 + MER103 DNA DNA 11 150 -16 27 0 0 0 chr4 26973900 26973927 -157314735 + AT_rich Low_complexity Low_complexity 1 27 0 4953 153 29 77 chr4 26974709 26974829 -157313833 - L1MA7 LINE L1 -3 6288 6164 243 0 0 0 chr4 26974829 26974856 -157313806 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 2083 104 0 11 chr4 26974856 26975143 -157313519 - AluSq SINE Alu -29 284 1 4953 153 29 77 chr4 26975143 26975999 -157312663 - L1MA7 LINE L1 -126 6165 5339 1617 157 0 75 chr4 26975999 26976318 -157312344 - AluJb SINE Alu -17 295 1 4953 153 29 77 chr4 26976318 26976470 -157312192 - L1MA7 LINE L1 -952 5339 5181 21 0 0 0 chr4 26976515 26976536 -157312126 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 26976968 26976996 -157311666 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 26978450 26978473 -157310189 + AT_rich Low_complexity Low_complexity 1 23 0 799 318 16 4 chr4 26978787 26979032 -157309630 - MIR SINE MIR -11 251 4 396 319 77 12 chr4 26979169 26979338 -157309324 - MIR SINE MIR -64 198 19 589 146 10 58 chr4 26979620 26979647 -157309015 + LOR1b LTR ERV1 364 391 -70 2475 82 51 20 chr4 26979647 26980000 -157308662 - THE1B LTR MaLR 0 364 1 589 146 10 58 chr4 26980000 26980075 -157308587 + LOR1b LTR ERV1 391 461 0 378 242 11 0 chr4 26980082 26980177 -157308485 - MER69 DNA AcHobo -2 2524 2429 917 120 12 18 chr4 26980854 26981021 -157307641 - L1MA5A LINE L1 0 6297 6132 1290 232 74 13 chr4 26981455 26981848 -157306814 - Zaphod DNA AcHobo -19 4012 3596 685 271 24 0 chr4 26981858 26982024 -157306638 - MER58B DNA MER1_type -1 340 171 1970 256 47 51 chr4 26982045 26982940 -157305722 - Zaphod DNA AcHobo -3041 990 100 2773 199 74 74 chr4 26983022 26983175 -157305487 - L1ME2 LINE L1 0 6164 6012 1805 168 0 10 chr4 26983175 26983472 -157305190 - AluJb SINE Alu -18 294 1 2773 199 74 74 chr4 26983472 26984222 -157304440 - L1ME2 LINE L1 -151 6013 5261 324 255 0 78 chr4 26984229 26984331 -157304331 + L1MC4 LINE L1 6614 6707 -1335 220 170 43 0 chr4 26984331 26984378 -157304284 + (TATATG)n Simple_repeat Simple_repeat 3 51 0 237 333 0 29 chr4 26984453 26984558 -157304104 - Zaphod DNA AcHobo -3919 112 11 2370 150 28 28 chr4 26984677 26985110 -157303552 + Tigger2a DNA MER2_type 1 433 -1 2393 85 0 0 chr4 26985234 26985528 -157303134 - AluSg SINE Alu -14 296 3 485 276 20 46 chr4 26986671 26986823 -157301839 + MIR SINE MIR 6 153 -109 1887 184 14 11 chr4 26986829 26987187 -157301475 - MLT1A1 LTR MaLR -6 359 1 268 311 48 19 chr4 26987187 26987290 -157301372 + MIR SINE MIR 149 254 -8 225 0 0 0 chr4 26987291 26987316 -157301346 + (TTA)n Simple_repeat Simple_repeat 2 26 0 3252 136 26 8 chr4 26987528 26988028 -157300634 + MER1A DNA MER1_type 21 529 0 360 0 0 0 chr4 26990249 26990289 -157298373 + (TG)n Simple_repeat Simple_repeat 2 41 0 1155 131 10 35 chr4 26990372 26990571 -157298091 + MSTA LTR MaLR 3 196 -232 956 269 25 65 chr4 26990565 26990918 -157297744 + MER115 DNA AcHobo 355 693 0 * 1277 202 91 3 chr4 26991044 26991351 -157297311 - MER45B DNA AcHobo -4 1036 703 253 310 9 9 chr4 26991726 26991739 -157296923 - L1MA10 LINE L1 -1 6333 6321 2221 227 55 37 chr4 26991739 26993026 -157295636 - L1ME1 LINE L1 -5 6161 4832 1561 175 7 51 chr4 26993169 26993461 -157295201 + AluJb SINE Alu 6 284 -28 1317 199 142 45 chr4 26993500 26994018 -157294644 - MER39 LTR ERV1 -3 684 1 468 289 180 12 chr4 26994022 26994361 -157294301 - HAL1 LINE L1 -1674 833 438 637 240 80 7 chr4 26994412 26994562 -157294100 - MER63A DNA MER1_type -1 209 49 331 244 63 8 chr4 26994722 26994849 -157293813 - HAL1 LINE L1 -2261 246 113 315 0 0 0 chr4 26996239 26996274 -157292388 + (TA)n Simple_repeat Simple_repeat 1 35 0 1670 28 0 28 chr4 26996276 26996492 -157292170 - L1PA5 LINE L1 0 6154 5945 539 167 29 0 chr4 26997274 26997412 -157291250 + CT-rich Low_complexity Low_complexity 2 143 0 578 306 97 9 chr4 26997588 26997804 -157290858 + MIR SINE MIR 28 262 0 22 70 0 0 chr4 26997834 26997877 -157290785 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr4 26998418 26998439 -157290223 + AT_rich Low_complexity Low_complexity 1 21 0 335 348 130 11 chr4 26998938 26999122 -157289540 - MIR SINE MIR -28 234 29 464 222 20 18 chr4 26999275 26999436 -157289226 - MER57A LTR ERV1 0 403 215 21 0 0 0 chr4 26999603 26999624 -157289038 + AT_rich Low_complexity Low_complexity 1 21 0 447 298 58 35 chr4 26999669 26999840 -157288822 - MIR SINE MIR -69 193 19 859 194 12 6 chr4 27000175 27000335 -157288327 + FAM SINE Alu 8 168 -17 194 290 51 80 chr4 27000448 27000586 -157288076 - L2 LINE L2 -226 3046 2913 190 337 12 23 chr4 27000748 27000834 -157287828 - L2 LINE L2 -255 3017 2933 477 185 12 0 chr4 27001325 27001406 -157287256 - MER93b LTR ERV1 -291 82 1 180 0 0 0 chr4 27001888 27001908 -157286754 + (T)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chr4 27002158 27002178 -157286484 + (TCCC)n Simple_repeat Simple_repeat 1 20 0 215 130 0 43 chr4 27002280 27002326 -157286336 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 313 340 56 6 chr4 27002991 27003153 -157285509 + MIR SINE MIR 57 226 -36 2529 160 149 46 chr4 27003594 27004154 -157284508 + MER39 LTR ERV1 1 635 -72 2590 89 41 36 chr4 27004154 27004389 -157284273 - L1MA5A LINE L1 -10 6287 6048 2210 113 0 10 chr4 27004389 27004698 -157283964 - AluSg SINE Alu -4 306 1 2590 89 41 36 chr4 27004698 27004901 -157283761 - L1MA5A LINE L1 -249 6048 5847 2529 160 149 46 chr4 27004901 27004972 -157283690 + MER39 LTR ERV1 635 697 -10 431 127 38 0 chr4 27005442 27005521 -157283141 + CT-rich Low_complexity Low_complexity 3 84 0 1996 123 23 7 chr4 27005537 27005837 -157282825 + AluSg SINE Alu 6 310 0 257 343 103 11 chr4 27006228 27006403 -157282259 + MIR3 SINE MIR 12 202 -6 207 0 0 0 chr4 27006594 27006617 -157282045 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2402 97 3 0 chr4 27008130 27008439 -157280223 + AluSg SINE Alu 1 310 0 1425 226 109 46 chr4 27008702 27009198 -157279464 - MER34 LTR ERV1 -5 537 11 406 368 13 39 chr4 27009746 27009980 -157278682 - MIR SINE MIR -28 234 7 279 325 12 31 chr4 27010056 27010216 -157278446 - L1ME LINE L1 -5904 166 10 322 336 44 0 chr4 27011176 27011289 -157277373 + L2 LINE L2 3151 3268 -4 308 319 76 91 chr4 27011340 27011616 -157277046 - L2 LINE L2 -91 3181 2910 266 284 0 0 chr4 27012487 27012554 -157276108 - MER96 DNA MER1_type? -106 69 3 249 196 0 0 chr4 27013270 27013321 -157275341 + (CATA)n Simple_repeat Simple_repeat 1 51 0 994 298 29 43 chr4 27014581 27015001 -157273661 - MLT1J2 LTR MaLR -36 414 1 1757 138 162 26 chr4 27015231 27015404 -157273258 + MSTA LTR MaLR 1 149 -279 2204 100 0 0 chr4 27015404 27015683 -157272979 + AluSg SINE Alu 16 294 -16 1757 138 162 26 chr4 27015683 27015886 -157272776 + MSTA LTR MaLR 149 428 0 1680 175 72 56 chr4 27016586 27017084 -157271578 + Charlie1b DNA MER1_type 12 517 -6 2142 89 0 0 chr4 27017684 27017953 -157270709 - AluSx SINE Alu -5 307 39 441 161 36 18 chr4 27017965 27018077 -157270585 - L1MD2 LINE L1 0 6359 6246 982 256 63 24 chr4 27018100 27018483 -157270179 + HAL1 LINE L1 1344 1741 -766 726 275 172 14 chr4 27018484 27019105 -157269557 + HAL1 LINE L1 1778 2496 -11 324 240 160 48 chr4 27019995 27020120 -157268542 + MIR SINE MIR 8 146 -116 479 223 0 0 chr4 27020267 27020361 -157268301 - MLT1C LTR MaLR 0 467 374 998 192 76 108 chr4 27020374 27020755 -157267907 + MLT1C LTR MaLR 99 467 0 229 356 91 9 chr4 27020762 27020981 -157267681 - L2 LINE L2 -136 3177 2941 658 310 84 4 chr4 27021413 27021639 -157267023 + MIR SINE MIR 2 245 -17 321 238 50 0 chr4 27022500 27022580 -157266082 - MIR SINE MIR -71 191 108 1783 228 2 0 chr4 27023316 27023750 -157264912 - L1 LINE L1 -2092 4054 3620 859 285 131 65 chr4 27024716 27025175 -157263487 + L2 LINE L2 2820 3308 -5 654 296 57 4 chr4 27025192 27025422 -157263240 - MIR SINE MIR -1 261 20 480 312 64 10 chr4 27026984 27027186 -157261476 + MIR SINE MIR 48 260 -2 23 0 0 0 chr4 27028064 27028087 -157260575 + AT_rich Low_complexity Low_complexity 1 23 0 255 61 0 0 chr4 27028728 27028761 -157259901 + (TG)n Simple_repeat Simple_repeat 2 34 0 345 326 51 78 chr4 27029684 27029978 -157258684 - HAL1 LINE L1 -1254 1253 968 2933 171 24 25 chr4 27029993 27030667 -157257995 + L1MA7 LINE L1 5619 6291 0 305 287 105 70 chr4 27031308 27031451 -157257211 - HAL1 LINE L1 -2358 149 2 1240 156 68 37 chr4 27031658 27031764 -157256898 + MLT1A1 LTR MaLR 1 102 -263 2065 139 44 33 chr4 27031764 27032124 -157256538 + THE1B LTR MaLR 1 364 0 1240 156 68 37 chr4 27032124 27032312 -157256350 + MLT1A1 LTR MaLR 102 304 -61 1388 73 23 41 chr4 27032317 27032536 -157256126 - L1PA8 LINE L1 0 6172 5958 2820 57 0 0 chr4 27032536 27032904 -157255758 + L1PA8 LINE L1 5572 5939 -233 363 169 0 0 chr4 27032905 27032970 -157255692 + MLT1A1 LTR MaLR 299 363 -2 2280 104 3 22 chr4 27033306 27033624 -157255038 - AluSx SINE Alu 0 312 1 771 329 34 0 chr4 27034583 27034817 -157253845 + MIR SINE MIR 21 262 0 283 388 20 6 chr4 27034813 27035044 -157253618 + L2 LINE L2 2731 2962 -310 * 21 36 0 0 chr4 27037255 27037283 -157251379 + AT_rich Low_complexity Low_complexity 1 28 0 1669 156 47 25 chr4 27037504 27037818 -157250844 + AluSg SINE Alu 1 320 0 322 343 36 7 chr4 27038019 27038156 -157250506 - MER5A DNA MER1_type -6 183 43 413 362 102 24 chr4 27038331 27038908 -157249754 - L2 LINE L2 -582 2732 2111 510 248 20 21 chr4 27039816 27039982 -157248680 + L1PB4 LINE L1 5996 6160 -6 345 207 0 0 chr4 27040396 27040483 -157248179 + (CAT)n Simple_repeat Simple_repeat 1 87 0 1082 263 80 25 chr4 27040501 27040901 -157247761 - LTR16B LTR ERVL -2 462 41 24 0 0 0 chr4 27041036 27041060 -157247602 + AT_rich Low_complexity Low_complexity 1 24 0 25 51 0 0 chr4 27041780 27041819 -157246843 + AT_rich Low_complexity Low_complexity 1 39 0 361 295 150 12 chr4 27042753 27042926 -157245736 - MIR SINE MIR 0 262 66 510 208 0 0 chr4 27044296 27044392 -157244270 - MIR SINE MIR -102 160 65 424 306 145 16 chr4 27044414 27044643 -157244019 + MIR SINE MIR 1 262 0 1498 267 80 10 chr4 27045486 27045973 -157242689 + LTR33 LTR ERVL 1 521 0 1082 273 47 43 chr4 27046405 27046849 -157241813 + MLT1C LTR MaLR 22 467 0 1797 205 5 8 chr4 27047159 27047540 -157241122 - MLT1B LTR MaLR 0 390 11 390 159 0 0 chr4 27047970 27048039 -157240623 + GA-rich Low_complexity Low_complexity 1 69 0 23 0 0 0 chr4 27048105 27048128 -157240534 + AT_rich Low_complexity Low_complexity 1 23 0 426 20 0 0 chr4 27048200 27048251 -157240411 + (TG)n Simple_repeat Simple_repeat 2 52 0 328 258 10 31 chr4 27049004 27049101 -157239561 + CT-rich Low_complexity Low_complexity 5 99 0 198 150 0 0 chr4 27049230 27049270 -157239392 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 251 266 0 25 chr4 27049347 27049426 -157239236 + (TA)n Simple_repeat Simple_repeat 1 77 0 231 125 0 0 chr4 27049520 27049560 -157239102 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 23 0 0 0 chr4 27049819 27049842 -157238820 + AT_rich Low_complexity Low_complexity 1 23 0 219 88 0 0 chr4 27049999 27050033 -157238629 + (TTTTTA)n Simple_repeat Simple_repeat 2 35 0 4137 16 0 14 chr4 27050042 27050530 -157238132 - L1PA3 LINE L1 0 6155 5675 612 267 65 28 chr4 27051034 27051494 -157237168 - HAL1 LINE L1 -154 2353 1877 2349 96 0 0 chr4 27052027 27052328 -157236334 + AluSg SINE Alu 1 301 -9 375 242 278 41 chr4 27052807 27053001 -157235661 - MIR SINE MIR -3 259 20 292 337 29 17 chr4 27053578 27053753 -157234909 + MIR SINE MIR 74 250 -12 447 293 99 54 chr4 27053998 27054605 -157234057 - L1ME3A LINE L1 -219 6020 5387 373 196 108 0 chr4 27054631 27054733 -157233929 - L1M4 LINE L1 -3599 2547 2435 1392 273 45 7 chr4 27054743 27055208 -157233454 - L1ME3A LINE L1 -5874 522 40 668 299 84 28 chr4 27055215 27055992 -157232670 - L1M4 LINE L1 -843 5303 4484 225 65 0 0 chr4 27056193 27056224 -157232438 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 2709 87 2 12 chr4 27056224 27056626 -157232036 - L1PA10 LINE L1 -21 6147 5750 198 0 0 0 chr4 27056702 27056724 -157231938 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1039 280 97 28 chr4 27056793 27057508 -157231154 - L1M4 LINE L1 -2027 4119 3356 216 86 0 0 chr4 27057686 27057721 -157230941 + (T)n Simple_repeat Simple_repeat 1 35 0 1100 303 165 28 chr4 27059367 27060215 -157228447 - L1M4 LINE L1 -2973 3173 2210 1587 90 4 26 chr4 27060225 27060458 -157228204 + L1PA8A LINE L1 5901 6128 -3 21 0 0 0 chr4 27060459 27060480 -157228182 + AT_rich Low_complexity Low_complexity 1 21 0 497 290 44 58 chr4 27060700 27061065 -157227597 - HAL1 LINE L1 -219 2288 1929 3422 202 28 14 chr4 27061097 27061878 -157226784 + L1MB3 LINE L1 5392 6183 0 23 0 0 0 chr4 27062045 27062068 -157226594 + AT_rich Low_complexity Low_complexity 1 23 0 1842 192 174 0 chr4 27062072 27062515 -157226147 + MLT2B1 LTR ERVL 1 520 0 392 287 44 7 chr4 27062515 27062651 -157226011 - HAL1 LINE L1 -564 1943 1803 766 174 56 51 chr4 27062687 27062883 -157225779 - MLT1B LTR MaLR -190 200 4 2122 134 97 0 chr4 27062885 27063227 -157225435 + THE1C LTR MaLR 1 375 0 463 280 100 0 chr4 27063260 27063410 -157225252 - HAL1 LINE L1 -733 1774 1610 609 360 98 32 chr4 27063414 27063875 -157224787 - L1MEd LINE L1 -5626 493 3 219 328 0 0 chr4 27064365 27064423 -157224239 + MIR SINE MIR 48 105 -157 2039 230 44 14 chr4 27064426 27065073 -157223589 - MER63C DNA MER1_type -131 931 213 1697 118 55 118 chr4 27065073 27065473 -157223189 + THE1C LTR MaLR 1 375 0 2039 230 44 14 chr4 27065473 27065693 -157222969 - MER63C DNA MER1_type -849 213 1 25 0 0 0 chr4 27066441 27066466 -157222196 + AT_rich Low_complexity Low_complexity 1 25 0 371 119 0 0 chr4 27066488 27066555 -157222107 - L1MC2 LINE L1 -1 6343 6277 209 341 0 12 chr4 27066671 27066753 -157221909 + L2 LINE L2 3192 3272 0 681 281 64 36 chr4 27067908 27068157 -157220505 + MIR SINE MIR 7 262 0 180 309 118 0 chr4 27068284 27068352 -157220310 - MIR SINE MIR -150 112 37 1195 219 5 0 chr4 27068371 27068590 -157220072 + MER58A DNA MER1_type 5 224 0 278 120 40 0 chr4 27068667 27068717 -157219945 + MER96 DNA MER1_type? 5 56 -119 2155 98 7 0 chr4 27069535 27069844 -157218818 + AluSp SINE Alu 7 317 0 209 360 13 47 chr4 27070038 27070188 -157218474 + L2 LINE L2 2894 3038 -234 218 279 33 16 chr4 27070335 27070396 -157218266 - L2 LINE L2 -1 3271 3210 185 356 33 22 chr4 27070582 27070672 -157217990 - MIR SINE MIR -14 248 158 241 328 0 0 chr4 27070800 27070867 -157217795 + MIR SINE MIR 79 145 -117 343 258 161 0 chr4 27071143 27071267 -157217395 + MER46C DNA MER2_type 195 338 0 2110 236 18 18 chr4 27072139 27072644 -157216018 + MLT1D LTR MaLR 1 505 0 1801 103 36 0 chr4 27072689 27072942 -157215720 + AluSg SINE Alu 49 310 0 438 228 50 0 chr4 27074035 27074136 -157214526 - MIR SINE MIR -70 192 87 2507 76 0 0 chr4 27074187 27074491 -157214171 + AluY SINE Alu 1 304 -7 267 294 206 0 chr4 27074844 27074980 -157213682 + MIR SINE MIR 10 173 -89 1948 222 59 59 chr4 27075232 27075560 -157213102 - MLT1E2 LTR MaLR 0 626 296 2176 119 3 0 chr4 27075560 27075863 -157212799 - AluSg SINE Alu -6 304 1 1948 222 59 59 chr4 27075863 27076143 -157212519 - MLT1E2 LTR MaLR -329 297 18 1675 193 45 30 chr4 27076401 27076849 -157211813 + MER89 LTR ERV1 3 556 -3 227 322 40 141 chr4 27076874 27076986 -157211676 + L2 LINE L2 2948 3070 -202 643 262 35 31 chr4 27076986 27077242 -157211420 - MIR SINE MIR -4 258 2 227 322 40 141 chr4 27077242 27077433 -157211229 + L2 LINE L2 3070 3220 -52 479 258 60 26 chr4 27078129 27078280 -157210382 - L2 LINE L2 0 3313 3158 213 39 0 0 chr4 27079454 27079480 -157209182 + (TA)n Simple_repeat Simple_repeat 2 27 0 2253 92 3 0 chr4 27080968 27081261 -157207401 - AluY SINE Alu -17 294 1 2218 68 47 0 chr4 27082360 27082638 -157206024 - AluYa5 SINE Alu -16 295 5 354 314 74 0 chr4 27083186 27083307 -157205355 - MIR SINE MIR -65 197 68 180 0 0 0 chr4 27083335 27083355 -157205307 + (TTA)n Simple_repeat Simple_repeat 1 20 0 512 284 37 50 chr4 27084116 27084334 -157204328 + MIR SINE MIR 48 262 0 334 347 148 0 chr4 27085274 27085470 -157203192 + MIR SINE MIR 30 254 -8 186 43 0 0 chr4 27085481 27085504 -157203158 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 836 281 32 24 chr4 27085551 27085800 -157202862 + MIR SINE MIR 2 252 -10 222 301 55 0 chr4 27086251 27086324 -157202338 + MIR SINE MIR 87 163 -99 1997 129 0 16 chr4 27088057 27088360 -157200302 - AluSq SINE Alu -15 298 1 403 264 80 8 chr4 27088366 27088491 -157200171 - MLT1B LTR MaLR -256 134 1 1557 170 37 1 chr4 27088501 27088813 -157199849 + MLT2D LTR ERVL 6 345 -52 1786 183 27 38 chr4 27089372 27089929 -157198733 + MLT2A2 LTR ERVL 1 547 -7 264 308 44 11 chr4 27089962 27090053 -157198609 + MIR SINE MIR 56 149 -113 662 232 66 38 chr4 27090053 27090264 -157198398 + L1MB5 LINE L1 5950 6166 -8 285 272 70 26 chr4 27090264 27090378 -157198284 + MIR SINE MIR 137 255 -7 223 220 17 34 chr4 27090747 27090806 -157197856 + L2 LINE L2 3246 3303 -10 183 114 0 0 chr4 27091062 27091097 -157197565 + (T)n Simple_repeat Simple_repeat 1 35 0 21 95 0 0 chr4 27091630 27091693 -157196969 + AT_rich Low_complexity Low_complexity 1 63 0 490 276 143 22 chr4 27091766 27092081 -157196581 - MLT1K LTR MaLR -42 546 194 4438 145 3 9 chr4 27092769 27093528 -157195134 - L1PA16 LINE L1 -9 6157 5404 2331 133 0 18 chr4 27093528 27093910 -157194752 + THE1C LTR MaLR 1 375 0 460 92 11 11 chr4 27093910 27093997 -157194665 - L1PA16 LINE L1 -758 5408 5322 2003 117 0 17 chr4 27093997 27094295 -157194367 - AluSg SINE Alu -13 297 5 354 314 74 0 chr4 27094844 27094965 -157193697 - MIR SINE MIR -65 197 68 180 0 0 0 chr4 27094993 27095013 -157193649 + (TTA)n Simple_repeat Simple_repeat 1 20 0 486 289 37 50 chr4 27095779 27095997 -157192665 + MIR SINE MIR 48 262 0 319 354 22 31 chr4 27096752 27096978 -157191684 + MIR SINE MIR 34 257 -5 339 311 28 0 chr4 27097001 27097107 -157191555 + L2 LINE L2 3197 3305 -8 1784 148 47 97 chr4 27098094 27098608 -157190054 - L1MA8 LINE L1 -4 6287 5800 911 165 6 6 chr4 27098607 27098783 -157189879 - L1MA8 LINE L1 -1369 4777 4602 * 942 88 7 0 chr4 27098783 27098920 -157189742 - L1M2 LINE L1 -510 5781 5644 378 235 30 76 chr4 27099198 27099365 -157189297 + MIR SINE MIR 64 218 -44 199 327 84 9 chr4 27099435 27099542 -157189120 + MIR3 SINE MIR 89 203 -5 263 254 0 0 chr4 27099660 27099719 -157188943 + (CATA)n Simple_repeat Simple_repeat 4 62 0 2519 73 0 19 chr4 27100175 27100492 -157188170 - AluY SINE Alu 0 311 1 22 80 0 0 chr4 27100673 27100723 -157187939 + AT_rich Low_complexity Low_complexity 1 50 0 302 283 19 28 chr4 27102103 27102209 -157186453 + MIR3 SINE MIR 98 202 -6 180 0 0 0 chr4 27104091 27104111 -157184551 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 1685 171 12 12 chr4 27104116 27104437 -157184225 - L1PB4 LINE L1 -13 6143 5823 207 309 49 25 chr4 27104439 27104520 -157184142 + MIR SINE MIR 20 102 -160 1867 149 0 59 chr4 27106477 27106800 -157181862 + AluSx SINE Alu 1 304 -8 1367 95 15 5 chr4 27106823 27107023 -157181639 + L1PA14 LINE L1 5958 6159 -2 2856 171 8 6 chr4 27107290 27107809 -157180853 + Tigger7 DNA MER2_type 1 520 -1967 571 122 11 0 chr4 27107811 27107901 -157180761 + Tigger7 DNA MER2_type 2401 2491 0 467 275 17 16 chr4 27108742 27108967 -157179695 - L1ME3A LINE L1 -295 5875 5688 402 349 48 0 chr4 27109015 27109161 -157179501 - MER91B DNA MER1_type 0 190 38 758 341 10 10 chr4 27110082 27110375 -157178287 + L3 LINE CR1 1229 1521 -56 5516 62 4 23 chr4 27111837 27112582 -157176080 - L1PA8 LINE L1 -10 6162 5432 702 251 11 38 chr4 27112584 27112767 -157175895 - MER5B DNA MER1_type 0 178 1 212 244 0 0 chr4 27113081 27113122 -157175540 + polypyrimidine Low_complexity Low_complexity 2 42 0 329 221 55 24 chr4 27113252 27113379 -157175283 - HAL1b LINE L1 -887 461 331 394 308 41 29 chr4 27113547 27113719 -157174943 - L1MEd LINE L1 -5002 1117 944 2111 133 67 14 chr4 27113872 27114218 -157174444 + THE1B LTR MaLR 1 364 0 180 0 0 103 chr4 27114698 27114737 -157173925 + (TTTTTA)n Simple_repeat Simple_repeat 1 35 0 5198 130 12 22 chr4 27114742 27115699 -157172963 - L1PB3 LINE L1 -8 6146 5197 2665 102 0 19 chr4 27115800 27116171 -157172491 - THE1B LTR MaLR 0 364 1 24 0 0 0 chr4 27116506 27116530 -157172132 + AT_rich Low_complexity Low_complexity 1 24 0 317 272 25 0 chr4 27117521 27117602 -157171060 - MIR3 SINE MIR -6 202 120 456 358 58 9 chr4 27117709 27117935 -157170727 + MIR SINE MIR 5 241 -21 2071 132 0 13 chr4 27117997 27118300 -157170362 - AluSc SINE Alu -10 299 1 706 281 248 17 chr4 27118382 27118802 -157169860 + L2 LINE L2 2388 2904 -410 370 108 0 84 chr4 27118885 27118968 -157169694 + L1PA16 LINE L1 5886 5961 -204 339 65 0 0 chr4 27118973 27119019 -157169643 - MLT2A1 LTR ERVL 0 444 399 3769 21 0 0 chr4 27119034 27119470 -157169192 + L1PA3 LINE L1 5718 6153 -2 27 49 0 0 chr4 27119481 27119522 -157169140 + AT_rich Low_complexity Low_complexity 1 41 0 2887 69 23 0 chr4 27119549 27119940 -157168722 - MLT2A1 LTR ERVL -44 400 1 1004 141 68 16 chr4 27119941 27120133 -157168529 + L1PA16 LINE L1 5963 6164 -2 1915 143 4 4 chr4 27120146 27120472 -157168190 + AluSx SINE Alu 6 331 0 3201 134 129 109 chr4 27120675 27122101 -157166561 - pTR5 LTR ERV1 -23 1683 31 703 184 26 37 chr4 27122108 27122298 -157166364 - L1PB4 LINE L1 -73 6083 5896 1463 112 95 16 chr4 27124204 27124508 -157164154 + L1MA8 LINE L1 5961 6288 -3 665 250 29 35 chr4 27124618 27124790 -157163872 + MIR SINE MIR 13 183 -79 * 737 291 44 45 chr4 27124783 27125249 -157163413 - L2 LINE L2 -186 3127 2658 1423 187 31 98 chr4 27125249 27125535 -157163127 - MLT1B LTR MaLR 0 390 139 2414 71 17 0 chr4 27125535 27125829 -157162833 - AluY SINE Alu -12 299 1 1423 187 31 98 chr4 27125829 27125960 -157162702 - MLT1B LTR MaLR -251 139 1 1557 170 37 1 chr4 27125970 27126282 -157162380 + MLT2D LTR ERVL 6 345 -52 1852 182 31 31 chr4 27126840 27127396 -157161266 + MLT2A2 LTR ERVL 1 554 0 316 286 44 11 chr4 27127426 27127517 -157161145 + MIR SINE MIR 56 149 -113 989 166 66 38 chr4 27127517 27127728 -157160934 + L1MB5 LINE L1 5950 6166 -8 252 228 123 79 chr4 27127728 27127842 -157160820 + MIR SINE MIR 137 255 -7 223 220 17 34 chr4 27128211 27128270 -157160392 + L2 LINE L2 3246 3303 -10 183 114 0 0 chr4 27128526 27128561 -157160101 + (T)n Simple_repeat Simple_repeat 1 35 0 21 95 0 0 chr4 27129093 27129156 -157159506 + AT_rich Low_complexity Low_complexity 1 63 0 490 276 143 22 chr4 27129229 27129544 -157159118 - MLT1K LTR MaLR -42 546 194 4535 140 3 9 chr4 27130232 27130991 -157157671 - L1PA16 LINE L1 -9 6157 5404 2411 132 0 11 chr4 27130991 27131370 -157157292 + THE1C LTR MaLR 1 375 0 7238 200 8 20 chr4 27131375 27131456 -157157206 - L1 LINE L1 -743 5403 5323 2133 120 0 7 chr4 27131456 27131755 -157156907 - AluSg SINE Alu -13 297 1 7238 200 8 20 chr4 27131755 27133479 -157155183 - L1 LINE L1 -823 5323 3620 191 326 101 45 chr4 27134749 27134927 -157153735 - MIR SINE MIR -12 250 63 197 267 67 0 chr4 27134967 27135012 -157153650 - L2 LINE L2 -77 3195 3148 462 319 9 22 chr4 27135231 27135460 -157153202 + ERVL LTR ERVL 3704 3929 -1835 3195 274 113 17 chr4 27135953 27137308 -157151354 + L2 LINE L2 1822 3313 0 205 133 44 0 chr4 27138186 27138231 -157150431 + (TG)n Simple_repeat Simple_repeat 2 48 0 22 70 0 0 chr4 27138930 27138973 -157149689 + AT_rich Low_complexity Low_complexity 1 43 0 1172 216 84 59 chr4 27139397 27139753 -157148909 + MLT1A1 LTR MaLR 1 365 0 549 297 179 0 chr4 27140274 27140486 -157148176 - MIR SINE MIR -11 251 2 846 126 42 0 chr4 27140831 27140974 -157147688 - L1PA16 LINE L1 0 6166 6018 556 231 19 69 chr4 27141267 27141427 -157147235 + MIR SINE MIR 107 258 -4 22 0 0 0 chr4 27141430 27141452 -157147210 + AT_rich Low_complexity Low_complexity 1 22 0 359 286 161 12 chr4 27141460 27141621 -157147041 + MIR SINE MIR 2 186 -76 415 339 189 0 chr4 27141810 27142064 -157146598 + L2 LINE L2 2533 2834 -480 1369 193 198 29 chr4 27142126 27142571 -157146091 + MLT2B1 LTR ERVL 1 520 0 25 31 0 0 chr4 27142895 27142927 -157145735 + AT_rich Low_complexity Low_complexity 1 32 0 407 255 5 132 chr4 27143009 27143213 -157145449 + MIR SINE MIR 74 251 -11 379 308 58 26 chr4 27143873 27143926 -157144736 + MIR SINE MIR 20 70 -192 2202 129 0 0 chr4 27143926 27144229 -157144433 - AluSg SINE Alu -7 303 1 379 308 58 26 chr4 27144229 27144331 -157144331 + MIR SINE MIR 70 180 -82 621 139 8 23 chr4 27144584 27144713 -157143949 + CT-rich Low_complexity Low_complexity 5 131 0 431 320 46 102 chr4 27145382 27145493 -157143169 + L2 LINE L2 2986 3102 -170 2300 114 3 0 chr4 27145493 27145799 -157142863 - AluSg SINE Alu -3 307 1 431 320 46 102 chr4 27145799 27145990 -157142672 + L2 LINE L2 3102 3271 -1 300 388 78 0 chr4 27147407 27147536 -157141126 - L2 LINE L2 0 3272 3134 660 176 141 0 chr4 27147734 27147876 -157140786 - MSTD LTR MaLR 0 396 235 216 0 0 0 chr4 27147901 27147925 -157140737 + (GA)n Simple_repeat Simple_repeat 1 24 0 475 226 0 0 chr4 27147925 27148027 -157140635 - MSTD LTR MaLR -294 102 1 2321 109 0 0 chr4 27148369 27148708 -157139954 - AluSx SINE Alu 0 339 1 222 242 0 0 chr4 27149370 27149436 -157139226 + CT-rich Low_complexity Low_complexity 2 67 0 650 296 134 41 chr4 27149466 27149964 -157138698 - L2 LINE L2 0 3313 2770 245 307 0 15 chr4 27150116 27150206 -157138456 + MIR SINE MIR 20 107 -101 852 315 114 38 chr4 27150257 27150895 -157137767 + L2 LINE L2 2059 2745 -569 195 42 0 0 chr4 27150900 27150924 -157137738 + (TTG)n Simple_repeat Simple_repeat 1 24 0 308 323 93 25 chr4 27151135 27151296 -157137366 + LTR67 LTR ERVL 1 172 -385 2312 103 0 0 chr4 27151536 27151838 -157136824 - AluY SINE Alu -9 302 1 651 296 55 43 chr4 27152124 27152377 -157136285 + MIR SINE MIR 2 257 -5 218 273 0 0 chr4 27152498 27152542 -157136120 + L2 LINE L2 3182 3225 -47 321 238 50 0 chr4 27152958 27153038 -157135624 - MIR SINE MIR -71 191 108 1908 208 26 29 chr4 27153918 27154364 -157134298 - MLT1C LTR MaLR 0 467 15 234 176 0 39 chr4 27154542 27154593 -157134069 - MLT1B LTR MaLR -157 233 185 385 382 29 32 chr4 27154812 27155152 -157133510 - L1MEd LINE L1 -5254 1162 824 960 292 130 47 chr4 27156000 27156216 -157132446 + MER77 LTR ERV1 53 250 -355 2585 89 24 128 chr4 27156216 27156722 -157131940 + MLT2A2 LTR ERVL 1 453 0 960 292 130 47 chr4 27156722 27157012 -157131650 + MER77 LTR ERV1 250 601 -4 249 182 0 0 chr4 27157101 27157156 -157131506 + (TG)n Simple_repeat Simple_repeat 2 56 0 2091 118 7 10 chr4 27157178 27157475 -157131187 - AluSx SINE Alu -16 296 1 327 25 0 0 chr4 27158287 27158327 -157130335 + (TA)n Simple_repeat Simple_repeat 2 41 0 2318 110 0 0 chr4 27158327 27158635 -157130027 - AluSx SINE Alu -4 308 1 23 0 0 0 chr4 27158685 27158708 -157129954 + AT_rich Low_complexity Low_complexity 1 23 0 4482 85 20 11 chr4 27158858 27159507 -157129155 + L1MA2 LINE L1 5547 6201 -103 338 169 0 0 chr4 27159501 27159560 -157129102 - L1MA2 LINE L1 -41 6263 6205 * 722 88 0 0 chr4 27159632 27159734 -157128928 + L1MA2 LINE L1 6203 6304 0 1615 173 33 36 chr4 27160554 27160918 -157127744 + MLT1A1 LTR MaLR 1 363 -2 772 124 15 7 chr4 27161370 27161507 -157127155 - L1MA8 LINE L1 -3 6288 6151 21 36 0 0 chr4 27162465 27162493 -157126169 + AT_rich Low_complexity Low_complexity 1 28 0 237 211 19 0 chr4 27162929 27162981 -157125681 - MIR SINE MIR -93 169 117 795 320 56 4 chr4 27165329 27165560 -157123102 + MIR SINE MIR 18 260 -2 1169 203 29 26 chr4 27165560 27165900 -157122762 - L1MEd LINE L1 -6098 328 20 6849 143 40 13 chr4 27166107 27167305 -157121357 + Tigger3b DNA MER2_type 1 1230 -1 993 198 63 16 chr4 27167752 27168005 -157120657 + L1MD3 LINE L1 7721 7985 -10 333 0 0 0 chr4 27168086 27168123 -157120539 + (CA)n Simple_repeat Simple_repeat 2 38 0 1627 207 43 41 chr4 27168455 27168981 -157119681 - L1MA6 LINE L1 -4 6296 5745 189 178 0 0 chr4 27168981 27169026 -157119636 + (TA)n Simple_repeat Simple_repeat 2 46 0 1294 130 0 14 chr4 27169026 27169242 -157119420 - L1M2 LINE L1 -498 5793 5581 * 6292 55 0 4 chr4 27169216 27169999 -157118663 - L1PA7 LINE L1 -1 6153 5374 751 224 20 1 chr4 27169999 27170171 -157118491 - L1P1 LINE L1 -557 5598 5425 603 285 12 12 chr4 27170354 27170526 -157118136 - MIR SINE MIR -59 203 32 384 337 54 22 chr4 27170973 27171157 -157117505 + MIR SINE MIR 63 252 -10 2139 134 21 19 chr4 27171714 27172087 -157116575 + THE1C LTR MaLR 2 375 0 213 309 32 0 chr4 27173545 27173639 -157115023 + CT-rich Low_complexity Low_complexity 1 97 0 322 339 16 16 chr4 27173660 27173787 -157114875 - L2 LINE L2 0 3313 3187 7817 268 37 16 chr4 27173886 27176675 -157111987 + L1MA9 LINE L1 7 2851 -4317 * 12255 218 41 14 chr4 27176646 27178204 -157110458 + L1MA9 LINE L1 3073 4587 -2746 2379 148 57 7 chr4 27178204 27178609 -157110053 - MSTA LTR MaLR 0 428 4 12255 218 41 14 chr4 27178609 27179084 -157109578 + L1MA9 LINE L1 4587 5048 -2285 2052 171 62 31 chr4 27179084 27179504 -157109158 - Tigger2a DNA MER2_type 0 434 2 12255 218 41 14 chr4 27179504 27181569 -157107093 + L1MA9 LINE L1 5048 7293 -40 21 36 0 0 chr4 27181570 27181598 -157107064 + AT_rich Low_complexity Low_complexity 1 28 0 745 230 12 0 chr4 27182402 27182567 -157106095 - MER5A DNA MER1_type 0 189 23 227 30 0 30 chr4 27183205 27183238 -157105424 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 501 324 39 0 chr4 27184059 27184238 -157104424 + MIR SINE MIR 18 203 -59 2387 98 3 0 chr4 27184279 27184585 -157104077 + AluSp SINE Alu 1 307 -6 276 314 17 8 chr4 27186211 27186329 -157102333 + Charlie7 DNA MER1_type 2 120 -2492 2242 151 21 0 chr4 27186330 27186713 -157101949 + L1MA9 LINE L1 5269 5659 -653 1973 174 73 13 chr4 27186720 27187169 -157101493 + L1MA9 LINE L1 5837 6312 0 240 35 0 0 chr4 27187243 27187272 -157101390 + (TA)n Simple_repeat Simple_repeat 2 30 0 1295 225 79 98 chr4 27187347 27187818 -157100844 - MLT1F1 LTR MaLR 0 567 106 327 169 0 0 chr4 27187843 27187914 -157100748 + (GGATG)n Simple_repeat Simple_repeat 3 73 0 252 233 0 41 chr4 27187916 27187989 -157100673 - MLT1F1 LTR MaLR -485 108 39 2047 157 0 0 chr4 27188000 27188306 -157100356 - AluSx SINE Alu -6 306 1 619 264 124 6 chr4 27188405 27188583 -157100079 - MER58C DNA MER1_type -16 199 1 314 328 25 25 chr4 27188592 27188714 -157099948 + L3 LINE CR1 1343 1464 -113 417 149 201 30 chr4 27188841 27188975 -157099687 - MER103 DNA DNA -7 159 3 238 296 112 20 chr4 27189171 27189269 -157099393 - L2 LINE L2 -5 3267 3161 265 232 0 0 chr4 27189297 27189353 -157099309 + L2 LINE L2 3216 3271 -1 255 140 0 0 chr4 27189424 27189474 -157099188 + (TC)n Simple_repeat Simple_repeat 1 50 0 467 300 74 26 chr4 27190478 27190668 -157097994 - MIR3 SINE MIR -5 203 5 650 197 86 45 chr4 27191050 27191294 -157097368 + MER69 DNA AcHobo 1485 1738 -788 * 1270 289 25 17 chr4 27191280 27191637 -157097025 - MER69 DNA AcHobo -1891 635 276 326 301 39 10 chr4 27191643 27191746 -157096916 - MIR SINE MIR -60 148 43 2202 91 0 23 chr4 27191899 27192208 -157096454 - AluSq SINE Alu -11 302 1 200 309 221 49 chr4 27193284 27193488 -157095174 + L2 LINE L2 2825 3063 -250 203 250 0 0 chr4 27193632 27193672 -157094990 + polypurine Low_complexity Low_complexity 1 40 0 600 141 0 10 chr4 27195917 27196016 -157092646 + MER4A LTR ERV1 1 98 -566 371 96 19 0 chr4 27196016 27196068 -157092594 + MER4A LTR ERV1 261 313 -351 13124 116 97 4 chr4 27196076 27198730 -157089932 - L1PBa LINE L1 -3324 3538 636 632 192 30 84 chr4 27198736 27198939 -157089723 - L1PBa LINE L1 -6669 194 3 357 82 0 0 chr4 27199452 27199501 -157089161 + (GA)n Simple_repeat Simple_repeat 1 49 0 548 267 93 13 chr4 27200355 27200588 -157088074 - MIR SINE MIR -9 253 6 244 327 103 9 chr4 27200864 27200971 -157087691 + L2 LINE L2 3189 3305 -8 396 299 161 19 chr4 27201169 27201547 -157087115 + L1ME4a LINE L1 5406 5837 -284 248 266 202 9 chr4 27202157 27202266 -157086396 - L2 LINE L2 0 3313 3184 311 266 151 7 chr4 27202388 27202527 -157086135 + L1ME4a LINE L1 5960 6118 -3 23 0 0 0 chr4 27202536 27202559 -157086103 + AT_rich Low_complexity Low_complexity 1 23 0 333 0 0 0 chr4 27202695 27202732 -157085930 + (TG)n Simple_repeat Simple_repeat 1 37 0 517 303 0 37 chr4 27204188 27204376 -157084286 - MIR SINE MIR 0 262 82 1986 142 0 25 chr4 27205065 27205382 -157083280 + AluSx SINE Alu 1 309 -3 247 297 11 11 chr4 27206387 27206478 -157082184 + CT-rich Low_complexity Low_complexity 1 91 0 2811 91 11 0 chr4 27206967 27207318 -157081344 + THE1A LTR MaLR 1 355 0 285 308 5 120 chr4 27207566 27207643 -157081019 + MER5A DNA MER1_type 1 85 -104 2258 73 0 53 chr4 27207643 27207946 -157080716 + AluY SINE Alu 1 287 -24 285 308 5 120 chr4 27207946 27208076 -157080586 + MER5A DNA MER1_type 85 184 -5 2316 57 7 3 chr4 27209086 27209369 -157079293 + AluY SINE Alu 1 284 -27 234 0 0 0 chr4 27209373 27209399 -157079263 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1346 144 115 43 chr4 27209707 27209985 -157078677 - MSTA LTR MaLR 0 428 131 2179 162 25 35 chr4 27209995 27210554 -157078108 + MLT2A2 LTR ERVL 1 551 -3 624 124 0 48 chr4 27210561 27210666 -157077996 - MSTA LTR MaLR -328 100 1 297 225 96 66 chr4 27210666 27210891 -157077771 + MLT1L LTR MaLR 345 615 0 212 211 0 0 chr4 27210918 27210956 -157077706 + L2 LINE L2 3192 3229 -84 1127 247 114 97 chr4 27210960 27211386 -157077276 - MLT1J LTR MaLR -40 410 1 447 300 19 71 chr4 27211442 27211586 -157077076 - MIR SINE MIR -17 245 114 2263 102 0 7 chr4 27211586 27211890 -157076772 + AluSq SINE Alu 1 302 -11 447 300 19 71 chr4 27211890 27211955 -157076707 - MIR SINE MIR -148 114 47 273 122 0 0 chr4 27211973 27212014 -157076648 - AluSc SINE Alu -10 289 249 875 243 63 18 chr4 27212260 27212642 -157076020 + LTR50 LTR ERVL 2 451 -344 218 128 43 0 chr4 27214373 27214420 -157074242 - L2 LINE L2 0 3313 3265 251 54 27 0 chr4 27214489 27214526 -157074136 + (GA)n Simple_repeat Simple_repeat 1 38 0 844 131 66 0 chr4 27214587 27214709 -157073953 - FLAM_C SINE Alu -1 132 3 486 208 0 21 chr4 27214748 27214844 -157073818 - MIR SINE MIR -110 152 59 211 322 0 0 chr4 27215030 27215120 -157073542 + (TTA)n Simple_repeat Simple_repeat 1 90 0 2427 48 41 0 chr4 27215273 27215568 -157073094 + AluY SINE Alu 1 307 -4 281 253 13 13 chr4 27216462 27216541 -157072121 + LTR33A LTR ERVL 444 522 -1 212 298 18 0 chr4 27216693 27216750 -157071912 + L2 LINE L2 2994 3051 -221 181 384 68 0 chr4 27216841 27216914 -157071748 - L2 LINE L2 -86 3186 3109 864 248 52 97 chr4 27218048 27218077 -157070585 + MLT1C LTR MaLR 16 45 -422 1646 149 126 0 chr4 27218077 27218338 -157070324 - AluJb SINE Alu -8 294 1 864 248 52 97 chr4 27218338 27218711 -157069951 + MLT1C LTR MaLR 45 400 -67 445 237 111 18 chr4 27218882 27219077 -157069585 - MIR3 SINE MIR -51 211 1 879 280 137 55 chr4 27219233 27219921 -157068741 + L2 LINE L2 2542 3308 -5 717 280 57 5 chr4 27219938 27220185 -157068477 - MIR SINE MIR -1 261 4 208 386 43 57 chr4 27222595 27222805 -157065857 + L2 LINE L2 3024 3230 -42 222 250 52 73 chr4 27223392 27223488 -157065174 + MIR SINE MIR 156 249 -13 233 302 0 62 chr4 27223931 27224027 -157064635 - MIR3 SINE MIR -54 154 84 255 317 30 0 chr4 27224809 27224910 -157063752 + MIR3 SINE MIR 105 208 0 23 0 0 0 chr4 27224967 27224990 -157063672 + AT_rich Low_complexity Low_complexity 1 23 0 2403 119 39 30 chr4 27224991 27225352 -157063310 + THE1B LTR MaLR 1 364 0 22 0 0 0 chr4 27225366 27225388 -157063274 + AT_rich Low_complexity Low_complexity 1 22 0 602 212 118 42 chr4 27226741 27227047 -157061615 + L1ME4a LINE L1 5791 6119 -2 1191 205 151 51 chr4 27227236 27227568 -157061094 + MLT1A1 LTR MaLR 1 365 0 344 278 87 0 chr4 27227650 27227765 -157060897 - LTR33 LTR ERVL -4 517 393 1182 230 72 24 chr4 27227833 27228168 -157060494 + L1ME2 LINE L1 5794 6144 -20 363 349 115 0 chr4 27228191 27228400 -157060262 - LTR33 LTR ERVL -282 239 7 44989 39 1 0 chr4 27229134 27235281 -157053381 - L1PA4 LINE L1 0 6155 2 182 279 115 77 chr4 27236007 27236111 -157052551 - MIR SINE MIR -63 145 38 4843 22 5 7 chr4 27236371 27236927 -157051735 - L1PA3 LINE L1 -108 6047 5493 522 211 29 0 chr4 27237312 27237323 -157051339 + MER5A DNA MER1_type 6 19 -170 205 252 122 37 chr4 27237323 27237430 -157051232 - MER5A DNA MER1_type -2 187 72 1491 214 7 0 chr4 27237583 27237868 -157050794 - AluJo SINE Alu -25 287 1 2094 135 3 0 chr4 27238971 27239275 -157049387 - AluSq SINE Alu -8 305 1 2169 135 3 0 chr4 27239355 27239667 -157048995 - L1PA13 LINE L1 -2 6161 5849 242 218 73 0 chr4 27240679 27240734 -157047928 + L2 LINE L2 3214 3272 0 1978 205 54 14 chr4 27241274 27241718 -157046944 - MLT1C LTR MaLR 0 467 6 195 269 115 77 chr4 27242719 27242823 -157045839 - MIR SINE MIR -63 145 38 1179 275 138 16 chr4 27243205 27243707 -157044955 - MLT1F1 LTR MaLR -3 564 3 472 302 6 19 chr4 27244409 27244568 -157044094 - L2 LINE L2 -1 3312 3156 349 319 34 17 chr4 27244597 27244716 -157043946 + L2 LINE L2 3137 3257 -15 598 319 48 42 chr4 27244764 27245145 -157043517 - L2 LINE L2 -208 3105 2724 301 360 85 9 chr4 27245167 27245287 -157043375 - L2 LINE L2 -696 2618 2509 411 21 0 0 chr4 27245287 27245335 -157043327 + (TG)n Simple_repeat Simple_repeat 2 49 0 301 360 85 9 chr4 27245335 27245425 -157043237 - L2 LINE L2 -805 2509 2392 900 167 19 25 chr4 27245436 27245598 -157043064 - MLT1C LTR MaLR 0 467 307 1445 81 187 8 chr4 27245648 27245921 -157042741 - AluSg1 SINE Alu 0 317 3 983 218 52 65 chr4 27245921 27246228 -157042434 + MLT1A1 LTR MaLR 63 365 0 544 174 18 0 chr4 27246229 27246338 -157042324 - MLT1C LTR MaLR -158 309 199 182 276 11 46 chr4 27246338 27246425 -157042237 - L2 LINE L2 -930 2384 2301 2445 76 0 0 chr4 27247731 27248035 -157040627 - AluSc SINE Alu -5 304 1 646 307 40 9 chr4 27248183 27248411 -157040251 + MIR SINE MIR 12 246 -16 * 857 207 31 47 chr4 27248373 27248566 -157040096 - MIR SINE MIR -24 238 49 22 88 0 0 chr4 27249575 27249632 -157039030 + AT_rich Low_complexity Low_complexity 1 57 0 1678 183 90 29 chr4 27250573 27250917 -157037745 + MLT1A1 LTR MaLR 1 365 0 378 252 37 9 chr4 27251344 27251451 -157037211 + MIR3 SINE MIR 97 206 -2 379 323 41 50 chr4 27251905 27252125 -157036537 + MIR SINE MIR 14 231 -31 225 227 45 15 chr4 27252163 27252229 -157036433 + MIR SINE MIR 171 238 -24 213 330 103 10 chr4 27252290 27252387 -157036275 - MIR SINE MIR -83 179 74 2341 123 123 5 chr4 27252567 27252950 -157035712 - MSTA LTR MaLR 0 428 1 1358 202 34 43 chr4 27253042 27253369 -157035293 - MER33 DNA MER1_type 0 324 1 1286 100 0 6 chr4 27255382 27255562 -157033100 - L1P4 LINE L1 -391 5772 5594 413 345 6 18 chr4 27256068 27256239 -157032423 + GA-rich Low_complexity Low_complexity 6 174 0 192 250 91 0 chr4 27257368 27257412 -157031250 + MIR SINE MIR 123 170 -92 255 229 14 29 chr4 27257944 27258014 -157030648 + CT-rich Low_complexity Low_complexity 1 69 0 384 232 89 27 chr4 27258642 27258754 -157029908 + MER115 DNA AcHobo 489 607 -86 229 274 28 28 chr4 27258774 27258880 -157029782 - L1MC5 LINE L1 -809 7152 7047 637 239 50 25 chr4 27258967 27259205 -157029457 - L1M4 LINE L1 -3724 2422 2179 1198 193 9 21 chr4 27259238 27259471 -157029191 - AluJo SINE Alu -25 287 58 337 197 40 0 chr4 27259472 27259548 -157029114 + Zaphod DNA AcHobo 3953 4031 0 1373 161 49 176 chr4 27260133 27260668 -157027994 + MLT1C LTR MaLR 1 467 0 378 278 154 6 chr4 27261645 27261814 -157026848 + MIR SINE MIR 11 204 -58 230 328 78 16 chr4 27262536 27262664 -157025998 - L2 LINE L2 -5 3267 3132 1618 202 29 61 chr4 27262695 27263105 -157025557 - MLT2C1 LTR ERVL 0 397 1 232 281 22 0 chr4 27263567 27263656 -157025006 + (TA)n Simple_repeat Simple_repeat 2 92 0 376 277 50 7 chr4 27263668 27263809 -157024853 + MER103 DNA DNA 14 160 -6 220 264 44 66 chr4 27263966 27264057 -157024605 - L3 LINE CR1 -17 1560 1472 1320 165 19 30 chr4 27264397 27264663 -157023999 - L1MA9 LINE L1 -114 6198 5936 * 5790 99 4 14 chr4 27264656 27265138 -157023524 - L1PA13 LINE L1 -2 6161 5690 2077 141 3 0 chr4 27265138 27265444 -157023218 - AluSx SINE Alu -5 307 1 5790 99 4 14 chr4 27265444 27265798 -157022864 - L1PA13 LINE L1 -473 5690 5334 1628 152 11 7 chr4 27265795 27266072 -157022590 - L1MA9 LINE L1 -392 5920 5643 * 4621 40 0 0 chr4 27266112 27266636 -157022026 - L1PA4 LINE L1 -3 6152 5629 567 281 64 82 chr4 27266641 27267033 -157021629 + L2 LINE L2 2929 3313 0 2713 121 6 6 chr4 27268207 27268571 -157020091 + THE1B LTR MaLR 1 364 0 607 326 74 18 chr4 27268601 27268994 -157019668 + L2 LINE L2 2187 2601 -713 1620 189 99 19 chr4 27269429 27269751 -157018911 - MER7A DNA MER2_type 0 346 1 663 279 74 10 chr4 27269768 27269782 -157018880 + L1ME3A LINE L1 5634 5646 -524 1139 184 114 0 chr4 27269782 27269983 -157018679 + MER58A DNA MER1_type 1 224 0 663 279 74 10 chr4 27269983 27270266 -157018396 + L1ME3A LINE L1 5646 5950 -220 408 292 139 28 chr4 27270386 27270773 -157017889 - L1M4 LINE L1 -920 5226 4797 302 284 37 0 chr4 27270777 27270858 -157017804 + L2 LINE L2 2622 2705 -609 208 219 0 0 chr4 27270858 27270899 -157017763 + (TG)n Simple_repeat Simple_repeat 2 42 0 195 298 74 33 chr4 27271008 27271129 -157017533 - MIR SINE MIR -112 150 25 23 33 0 0 chr4 27271246 27271276 -157017386 + AT_rich Low_complexity Low_complexity 1 30 0 2381 71 7 23 chr4 27271319 27271629 -157017033 + L1PA10 LINE L1 5862 6166 -2 3279 164 47 16 chr4 27271888 27272462 -157016200 + MER6A DNA MER2_type 1 592 -13 850 206 181 36 chr4 27272911 27273187 -157015475 - LOR1a LTR ERV1 0 497 182 351 211 0 0 chr4 27273172 27273243 -157015419 - LOR1a LTR ERV1 -189 308 238 * 611 297 160 37 chr4 27273335 27273901 -157014761 + L2 LINE L2 2659 3276 -37 553 384 51 6 chr4 27274189 27274525 -157014137 + L2 LINE L2 2456 2806 -508 234 349 47 0 chr4 27274701 27274787 -157013875 + L2 LINE L2 2436 2525 -789 220 271 102 0 chr4 27274796 27274855 -157013807 - MIR SINE MIR -119 89 25 915 223 48 9 chr4 27275153 27275382 -157013280 - MIR SINE MIR -10 252 15 228 354 73 21 chr4 27275560 27275656 -157013006 + MIR SINE MIR 41 141 -67 21 0 0 0 chr4 27275678 27275699 -157012963 + AT_rich Low_complexity Low_complexity 1 21 0 370 343 55 17 chr4 27275962 27276198 -157012464 + MLT1K LTR MaLR 322 566 -22 399 332 69 22 chr4 27276298 27276575 -157012087 - L2 LINE L2 -469 2845 2556 1846 124 0 8 chr4 27277148 27277413 -157011249 - AluSg SINE Alu -8 302 40 21 57 0 0 chr4 27277762 27277797 -157010865 + AT_rich Low_complexity Low_complexity 1 35 0 553 213 44 0 chr4 27277899 27278035 -157010627 + MIR SINE MIR 120 261 -1 1412 288 93 36 chr4 27278475 27279406 -157009256 - L2 LINE L2 -10 3303 675 3419 110 23 6 chr4 27279406 27279889 -157008773 + LTR3b LTR ERVK 1 491 -9 395 119 0 75 chr4 27279889 27279956 -157008706 + LTR3b LTR ERVK 421 482 -18 * 508 125 0 0 chr4 27279932 27280004 -157008658 + LTR3b LTR ERVK 422 493 -7 1238 302 127 28 chr4 27280005 27280587 -157008075 - L2 LINE L2 -2633 681 42 2788 75 29 3 chr4 27280743 27281089 -157007573 - THE1A LTR MaLR 0 355 1 216 267 116 35 chr4 27281179 27281265 -157007397 - MIR SINE MIR -107 155 63 223 288 76 0 chr4 27281371 27281437 -157007225 + MIR SINE MIR 56 126 -136 927 234 154 46 chr4 27281444 27281815 -157006847 - LTR16B LTR ERVL -32 432 22 1731 230 42 14 chr4 27281883 27282116 -157006546 - L1MB5 LINE L1 0 6174 5942 421 279 31 49 chr4 27282116 27282317 -157006345 - L1MC4a LINE L1 -1879 5929 5731 1808 159 46 13 chr4 27282317 27282619 -157006043 - AluSx SINE Alu 0 312 1 421 279 31 49 chr4 27282619 27282643 -157006019 - L1MC4a LINE L1 -2077 5731 5708 213 154 0 0 chr4 27282912 27282951 -157005711 + T-rich Low_complexity Low_complexity 1 39 0 292 323 38 13 chr4 27283017 27283175 -157005487 + L3b LINE CR1 1304 1465 -118 466 291 135 22 chr4 27283457 27283687 -157004975 + MIR SINE MIR 5 260 -2 249 245 286 10 chr4 27283988 27284086 -157004576 + L2 LINE L2 3187 3311 -2 249 277 36 121 chr4 27284342 27284508 -157004154 - MLT1J LTR MaLR -204 307 156 207 162 0 0 chr4 27284548 27284585 -157004077 + CT-rich Low_complexity Low_complexity 3 39 0 218 158 0 123 chr4 27284678 27284735 -157003927 - MIR SINE MIR -56 152 106 2053 121 3 3 chr4 27285012 27285302 -157003360 - AluSx SINE Alu -22 290 1 849 211 6 22 chr4 27285530 27285710 -157002952 + MER5B DNA MER1_type 1 177 -1 292 296 31 0 chr4 27286299 27286397 -157002265 - MER102a DNA MER1_type -9 321 221 1122 162 17 0 chr4 27287002 27287175 -157001487 - L1PB1 LINE L1 0 6151 5976 2229 116 0 3 chr4 27287883 27288186 -157000476 + AluSq SINE Alu 1 302 -11 927 210 46 25 chr4 27289198 27289479 -156999183 - L1MC5 LINE L1 -365 7596 7310 309 240 0 0 chr4 27289479 27289575 -156999087 + CT-rich Low_complexity Low_complexity 2 97 0 426 261 63 9 chr4 27292943 27293054 -156995608 + MIR SINE MIR 30 146 -62 573 266 66 35 chr4 27293349 27293636 -156995026 - MLT1L LTR MaLR -2 613 234 22 0 0 0 chr4 27294046 27294068 -156994594 + AT_rich Low_complexity Low_complexity 1 22 0 209 296 34 54 chr4 27294414 27294474 -156994188 - MIR SINE MIR -3 259 199 1574 202 10 3 chr4 27294474 27294766 -156993896 - AluJb SINE Alu -18 294 1 209 296 34 54 chr4 27294766 27294896 -156993766 - MIR SINE MIR -63 199 12 280 294 157 0 chr4 27294929 27295031 -156993631 - L2 LINE L2 -2 3270 3153 303 159 302 0 chr4 27295295 27295358 -156993304 - MER20 DNA MER1_type -137 82 1 224 317 29 19 chr4 27295774 27295878 -156992784 + MIR3 SINE MIR 83 187 -21 189 0 0 0 chr4 27296082 27296103 -156992559 + (TC)n Simple_repeat Simple_repeat 1 21 0 311 135 0 54 chr4 27296223 27296297 -156992365 - L1MA8 LINE L1 -4 6287 6218 210 188 20 79 chr4 27296487 27296588 -156992074 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 202 281 18 0 chr4 27296607 27296664 -156991998 + CT-rich Low_complexity Low_complexity 1 58 0 679 185 23 0 chr4 27296766 27296896 -156991766 + L1M4c LINE L1 2400 2532 -4317 * 3371 259 28 9 chr4 27296867 27297867 -156990795 + L1M4c LINE L1 2754 3776 -3072 2732 164 5 87 chr4 27298301 27298867 -156989795 + MLT2B1 LTR ERVL 1 520 0 527 312 19 13 chr4 27298871 27299025 -156989637 + MIR SINE MIR 24 178 -84 252 284 61 40 chr4 27299803 27299951 -156988711 - L1ME3A LINE L1 -218 5952 5802 * 262 221 141 80 chr4 27299932 27300095 -156988567 - L1P4 LINE L1 -383 5778 5606 236 253 20 116 chr4 27301019 27301165 -156987497 - MIR3 SINE MIR -75 133 2 541 255 7 26 chr4 27301355 27301508 -156987154 + MIR SINE MIR 31 180 -82 503 250 129 21 chr4 27301527 27301667 -156986995 + MER5A DNA MER1_type 32 186 -3 283 219 14 55 chr4 27301673 27301746 -156986916 + MIR SINE MIR 193 262 0 216 279 44 15 chr4 27301870 27301938 -156986724 + L2 LINE L2 3210 3279 -34 468 51 0 0 chr4 27302665 27302724 -156985938 + (CAT)n Simple_repeat Simple_repeat 2 60 0 468 289 51 39 chr4 27302726 27302942 -156985720 - MIR SINE MIR -13 249 33 803 264 136 51 chr4 27303919 27304389 -156984273 + MLT1J LTR MaLR 1 510 -1 335 200 80 0 chr4 27304391 27304466 -156984196 - MER117 DNA MER1_type -113 84 4 264 308 60 34 chr4 27304495 27304612 -156984050 + L2 LINE L2 3153 3272 0 1016 216 134 20 chr4 27304804 27305058 -156983604 + MLT1C LTR MaLR 185 467 0 241 353 144 7 chr4 27305438 27305577 -156983085 - MER5A DNA MER1_type -23 166 9 288 0 0 0 chr4 27305991 27306023 -156982639 + (CA)n Simple_repeat Simple_repeat 2 33 0 418 150 110 20 chr4 27306338 27306438 -156982224 + MLT1B-int LTR MaLR 1262 1370 -1 899 175 26 0 chr4 27306442 27306596 -156982066 + MLT1B LTR MaLR 6 163 -227 292 133 0 0 chr4 27306696 27306741 -156981921 - Alu SINE Alu -255 47 3 411 276 67 0 chr4 27307315 27307420 -156981242 - MIR SINE MIR -68 140 29 199 251 95 153 chr4 27307577 27307968 -156980694 - L2 LINE L2 -1 3271 2904 306 317 183 24 chr4 27308168 27308496 -156980166 - L2 LINE L2 -550 2764 2385 427 296 75 5 chr4 27308852 27309038 -156979624 + MLT1L LTR MaLR 413 611 -4 2114 95 87 38 chr4 27309224 27309571 -156979091 + THE1B LTR MaLR 1 364 0 631 277 43 0 chr4 27309571 27309755 -156978907 + MIR3 SINE MIR 7 198 -10 193 247 210 0 chr4 27310170 27310251 -156978411 + MIR SINE MIR 158 255 -7 603 308 112 58 chr4 27310800 27311401 -156977261 + L2 LINE L2 2624 3272 0 426 333 41 7 chr4 27312334 27312481 -156976181 - MIR3 SINE MIR -5 203 52 244 277 0 109 chr4 27312573 27312692 -156975970 + L2 LINE L2 2932 3037 -235 794 181 52 7 chr4 27314257 27314412 -156974250 - MIR SINE MIR -61 201 40 347 252 44 52 chr4 27314586 27314721 -156973941 + L2 LINE L2 3179 3312 -1 483 101 0 0 chr4 27314820 27314899 -156973763 + (TG)n Simple_repeat Simple_repeat 2 80 0 247 258 56 22 chr4 27315560 27315649 -156973013 - MIR3 SINE MIR -23 185 94 688 266 62 37 chr4 27316695 27316939 -156971723 + MIR SINE MIR 5 254 -8 24 39 0 0 chr4 27318024 27318050 -156970612 + AT_rich Low_complexity Low_complexity 1 26 0 510 309 88 34 chr4 27319876 27320264 -156968398 + MLT1L LTR MaLR 196 604 -11 225 180 56 101 chr4 27320265 27320354 -156968308 - MLT1J2 LTR MaLR -1 449 365 257 320 20 0 chr4 27320427 27320527 -156968135 - MLT1J2 LTR MaLR -238 212 111 317 239 57 0 chr4 27320726 27320814 -156967848 + L1ME3A LINE L1 6078 6170 0 1845 175 3 14 chr4 27320819 27321116 -156967546 + AluJo SINE Alu 1 294 -18 2096 201 29 12 chr4 27321256 27321675 -156966987 - MSTB LTR MaLR 0 426 1 484 218 26 26 chr4 27322257 27322413 -156966249 + MER103 DNA DNA 1 156 -10 271 305 85 25 chr4 27322502 27322620 -156966042 + MIR3 SINE MIR 30 154 -54 252 184 26 79 chr4 27322734 27322810 -156965852 + MLT1L LTR MaLR 1 72 -543 210 118 0 0 chr4 27323321 27323355 -156965307 + (GGGA)n Simple_repeat Simple_repeat 1 34 0 265 275 22 0 chr4 27325460 27325551 -156963111 + (TG)n Simple_repeat Simple_repeat 2 94 0 299 206 309 0 chr4 27325921 27326018 -156962644 + L2 LINE L2 3146 3272 0 508 270 137 17 chr4 27327430 27327730 -156960932 - L2 LINE L2 -169 3144 2809 1035 127 4 0 chr4 27327855 27328098 -156960564 + (TA)n Simple_repeat Simple_repeat 1 245 0 331 240 168 24 chr4 27328965 27329090 -156959572 - MIR SINE MIR -100 162 20 326 191 16 0 chr4 27330274 27330337 -156958325 - MLT1J2 LTR MaLR -44 406 343 342 233 63 69 chr4 27330383 27330542 -156958120 - MLT1J2 LTR MaLR 0 450 293 349 284 95 34 chr4 27330681 27330829 -156957833 - MIR SINE MIR -71 191 35 447 268 14 49 chr4 27331745 27331887 -156956775 + MIR SINE MIR 123 259 -3 263 315 105 11 chr4 27333099 27333280 -156955382 - MIR SINE MIR -29 233 36 403 162 90 27 chr4 27334511 27334622 -156954040 - MER106B DNA MER1_type 0 1059 942 278 257 10 69 chr4 27334618 27334719 -156953943 - MER106B DNA MER1_type -956 103 9 * 335 314 65 16 chr4 27335150 27335274 -156953388 + MIR SINE MIR 96 225 -37 188 237 0 0 chr4 27335488 27335526 -156953136 - L2 LINE L2 -37 3235 3198 513 261 76 28 chr4 27335544 27335867 -156952795 - MLT1G3 LTR MaLR 0 595 153 216 191 0 0 chr4 27335869 27335911 -156952751 + GA-rich Low_complexity Low_complexity 2 43 0 206 389 33 0 chr4 27336083 27336173 -156952489 - MIR SINE MIR -81 181 89 261 356 148 0 chr4 27336772 27336873 -156951789 + MIR SINE MIR 19 134 -74 534 288 13 7 chr4 27338181 27338334 -156950328 + MIR SINE MIR 108 261 -1 322 325 0 25 chr4 27338418 27338538 -156950124 + (ATGGTG)n Simple_repeat Simple_repeat 6 122 0 738 200 9 4 chr4 27338540 27338778 -156949884 + (ATG)n Simple_repeat Simple_repeat 1 239 0 370 305 28 0 chr4 27338947 27339088 -156949574 - LTR33 LTR ERVL -50 471 327 332 202 37 46 chr4 27339142 27339251 -156949411 - LTR33 LTR ERVL -281 240 133 856 279 167 35 chr4 27339979 27340262 -156948400 + L2 LINE L2 2853 3206 -107 2954 118 12 2 chr4 27340262 27340685 -156947977 + MSTA LTR MaLR 1 427 -1 856 279 167 35 chr4 27340685 27340803 -156947859 + L2 LINE L2 3206 3307 -6 267 79 0 0 chr4 27340893 27340931 -156947731 + (CA)n Simple_repeat Simple_repeat 1 38 0 24 0 0 0 chr4 27341086 27341110 -156947552 + AT_rich Low_complexity Low_complexity 1 24 0 33 0 0 0 chr4 27341633 27341666 -156946996 + AT_rich Low_complexity Low_complexity 1 33 0 1915 177 34 11 chr4 27342237 27342587 -156946075 - MLT1A1 LTR MaLR -7 358 1 353 294 238 0 chr4 27342588 27342731 -156945931 - MER5A DNA MER1_type 0 189 13 523 267 82 67 chr4 27343125 27343380 -156945282 + MIR SINE MIR 3 261 -1 2373 250 15 10 chr4 27343667 27344275 -156944387 + L1ME2 LINE L1 5483 6093 -71 229 232 137 11 chr4 27344402 27344497 -156944165 + L1MC4 LINE L1 7924 8030 -12 520 304 38 71 chr4 27344560 27345064 -156943598 + L2 LINE L2 2791 3272 0 210 37 0 0 chr4 27345158 27345185 -156943477 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 382 216 0 0 chr4 27345505 27345579 -156943083 - MIR SINE MIR -68 140 67 262 307 57 11 chr4 27345632 27345720 -156942942 - L2 LINE L2 -29 3243 3152 1058 250 156 9 chr4 27345781 27346121 -156942541 - LTR16C LTR ERVL -2 489 100 332 109 36 0 chr4 27346416 27346471 -156942191 + THE1C LTR MaLR 319 375 0 459 268 134 0 chr4 27346504 27346683 -156941979 - HAL1 LINE L1 -733 1774 1572 522 367 102 35 chr4 27346687 27347120 -156941542 - L1MEd LINE L1 -5655 464 3 211 328 0 0 chr4 27347610 27347668 -156940994 + MIR SINE MIR 48 105 -157 1366 245 46 11 chr4 27347671 27348319 -156940343 - MER63C DNA MER1_type 0 930 224 1629 123 58 120 chr4 27348319 27348719 -156939943 + THE1C LTR MaLR 1 375 0 695 232 41 14 chr4 27348719 27348937 -156939725 - MER63C DNA MER1_type -702 228 5 25 0 0 0 chr4 27349697 27349722 -156938940 + AT_rich Low_complexity Low_complexity 1 25 0 373 134 0 0 chr4 27349744 27349811 -156938851 - L1MC2 LINE L1 -1 6343 6277 218 341 0 12 chr4 27349927 27350009 -156938653 + L2 LINE L2 3192 3272 0 192 294 153 0 chr4 27350514 27350599 -156938063 - L2 LINE L2 -31 3241 3144 2030 170 10 31 chr4 27350875 27351292 -156937370 + MLT2D LTR ERVL 1 408 -6 194 297 109 0 chr4 27351324 27351388 -156937274 + MIR3 SINE MIR 132 202 -6 344 295 171 39 chr4 27351583 27351764 -156936898 - MIR SINE MIR -42 220 15 1240 146 139 38 chr4 27352310 27352597 -156936065 - THE1C LTR MaLR 0 375 60 1764 103 126 8 chr4 27353055 27353318 -156935344 - AluSg1 SINE Alu -15 294 1 189 74 0 0 chr4 27353604 27353631 -156935031 + (GA)n Simple_repeat Simple_repeat 1 27 0 854 276 91 16 chr4 27353637 27354068 -156934594 + LTR16B LTR ERVL 1 463 -1 213 312 21 21 chr4 27354099 27354192 -156934470 + MIR SINE MIR 96 188 -74 453 201 250 7 chr4 27356177 27356321 -156932341 + MIR3 SINE MIR 16 194 -14 516 268 52 20 chr4 27356940 27357093 -156931569 - MIR SINE MIR 0 262 105 681 231 115 60 chr4 27357106 27357570 -156931092 - LTR33A LTR ERVL -2 521 8 613 262 92 0 chr4 27358105 27358311 -156930351 - LTR16C LTR ERVL -2 489 265 305 265 21 21 chr4 27358999 27359145 -156929517 + HERVL68 LTR ERVL 2723 4660 -257 194 383 56 0 chr4 27359342 27359449 -156929213 + L2 LINE L2 3141 3253 -19 868 258 77 14 chr4 27360919 27361140 -156927522 + MIR SINE MIR 7 241 -21 392 293 16 8 chr4 27362232 27362355 -156926307 - MIR SINE MIR -65 143 20 204 206 64 19 chr4 27362997 27363075 -156925587 - MIR SINE MIR -73 135 61 523 147 35 86 chr4 27364262 27364378 -156924284 + MER81 DNA DNA 1 110 -4 235 0 0 54 chr4 27364931 27364968 -156923694 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 374 323 36 55 chr4 27365823 27366043 -156922619 - L1MC4 LINE L1 -1 8041 7826 3476 222 85 25 chr4 27366101 27368060 -156920602 - L1ME2 LINE L1 -23 6141 4063 641 180 94 144 chr4 27368065 27368321 -156920341 + LTR40a LTR ERVL 6 248 -271 1022 188 21 59 chr4 27368333 27368514 -156920148 - MLT1A2 LTR MaLR -144 230 59 2137 131 48 31 chr4 27368514 27368872 -156919790 - THE1B LTR MaLR 0 364 1 1022 188 21 59 chr4 27368872 27368929 -156919733 - MLT1A2 LTR MaLR -315 59 1 1764 244 102 7 chr4 27368944 27369521 -156919141 - L1ME2 LINE L1 -2567 3579 2948 306 0 0 0 chr4 27370382 27370416 -156918246 + (CA)n Simple_repeat Simple_repeat 2 35 0 249 83 0 0 chr4 27370466 27370502 -156918160 + (CA)n Simple_repeat Simple_repeat 1 36 0 207 69 0 0 chr4 27370546 27370575 -156918087 + (CA)n Simple_repeat Simple_repeat 2 30 0 412 164 0 0 chr4 27370647 27370708 -156917954 - MER5B DNA MER1_type -5 173 113 2558 248 53 18 chr4 27370708 27371523 -156917139 + L1ME3A LINE L1 5328 6170 0 401 268 49 24 chr4 27371523 27371646 -156917016 - MER5B DNA MER1_type -48 130 5 371 299 51 65 chr4 27371667 27371884 -156916778 + MIR SINE MIR 34 247 -15 363 311 80 0 chr4 27372658 27372809 -156915853 + MIR3 SINE MIR 30 192 -16 276 278 185 0 chr4 27374907 27375015 -156913647 - MLT1L LTR MaLR 0 615 488 * 348 253 0 22 chr4 27375008 27375099 -156913563 - MLT1H1 LTR MaLR -444 111 23 277 233 0 0 chr4 27375118 27375178 -156913484 + MLT1H LTR MaLR 477 536 -13 182 295 123 57 chr4 27375841 27375963 -156912699 - L2 LINE L2 -7 3265 3136 450 267 30 0 chr4 27376016 27376117 -156912545 - L2 LINE L2 -10 3303 3200 770 300 99 0 chr4 27376306 27376599 -156912063 + LTR16C LTR ERVL 139 460 -31 22 80 0 0 chr4 27377659 27377709 -156910953 + AT_rich Low_complexity Low_complexity 1 50 0 1815 97 0 50 chr4 27377891 27378225 -156910437 + AluSx SINE Alu 1 319 0 1379 245 34 58 chr4 27378230 27378642 -156910020 + MLT1J LTR MaLR 110 511 0 704 257 68 42 chr4 27378644 27378955 -156909707 + MER102b DNA MER1_type 23 341 0 252 365 9 19 chr4 27379182 27379289 -156909373 - MIR SINE MIR -68 140 35 216 0 0 0 chr4 27379369 27379393 -156909269 + (A)n Simple_repeat Simple_repeat 1 24 0 243 264 14 42 chr4 27379601 27379673 -156908989 + L2 LINE L2 3231 3300 -13 180 0 0 0 chr4 27379673 27379693 -156908969 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 1017 254 44 84 chr4 27381495 27381901 -156906761 + LTR16B LTR ERVL 1 390 -74 254 236 364 0 chr4 27382100 27382210 -156906452 - L2 LINE L2 -370 2944 2795 295 317 17 17 chr4 27382483 27382603 -156906059 + MIR SINE MIR 35 154 -108 310 279 0 0 chr4 27382613 27382681 -156905981 - MIR SINE MIR -1 261 194 525 310 14 8 chr4 27382934 27383084 -156905578 - MIR SINE MIR -63 145 17 478 316 26 7 chr4 27383234 27383386 -156905276 - L2 LINE L2 0 3272 3118 207 324 15 0 chr4 27383914 27383982 -156904680 + MIR SINE MIR 194 262 0 395 276 29 9 chr4 27385245 27385391 -156903271 - MIR SINE MIR -63 145 12 423 0 0 0 chr4 27385472 27385519 -156903143 + (CA)n Simple_repeat Simple_repeat 1 47 0 224 218 36 18 chr4 27385683 27385738 -156902924 - L2 LINE L2 -25 3247 3192 220 330 77 0 chr4 27386142 27386233 -156902429 + L2 LINE L2 3202 3299 -14 267 103 0 0 chr4 27386233 27386272 -156902390 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 281 328 12 20 chr4 27386940 27387089 -156901573 + GA-rich Low_complexity Low_complexity 4 242 0 204 146 0 24 chr4 27387690 27387731 -156900931 + (TG)n Simple_repeat Simple_repeat 2 41 0 198 91 0 0 chr4 27387930 27387963 -156900699 + (CA)n Simple_repeat Simple_repeat 2 34 0 2276 143 69 101 chr4 27388435 27389069 -156899593 + LTR18B LTR ERVL 1 614 0 331 291 45 18 chr4 27389177 27389287 -156899375 + MIR SINE MIR 77 189 -73 579 328 108 11 chr4 27389411 27389762 -156898900 + L3 LINE CR1 1128 1512 -65 1077 269 166 9 chr4 27390264 27390295 -156898367 + LTR33A LTR ERVL 1 26 -497 1381 194 10 102 chr4 27390295 27390697 -156897965 - MLT1A1 LTR MaLR 0 365 1 1077 269 166 9 chr4 27390697 27391104 -156897558 + LTR33A LTR ERVL 26 508 -15 189 234 0 0 chr4 27392095 27392159 -156896503 + (CCA)n Simple_repeat Simple_repeat 1 64 0 2113 102 3 0 chr4 27392476 27392769 -156895893 - AluSq SINE Alu -19 294 1 583 268 80 65 chr4 27392946 27393413 -156895249 - LTR33A LTR ERVL -17 506 20 316 340 115 31 chr4 27393558 27394011 -156894651 - L2 LINE L2 -453 2861 2371 1854 179 53 68 chr4 27394810 27395284 -156893378 - MLT1C LTR MaLR 0 467 1 1183 190 14 137 chr4 27395546 27395962 -156892700 - MLT1A1 LTR MaLR 0 365 1 528 259 41 35 chr4 27396036 27396206 -156892456 - MIR3 SINE MIR -7 201 31 287 309 140 22 chr4 27396795 27396931 -156891731 - MIR3 SINE MIR -6 202 51 2171 230 74 25 chr4 27396999 27397552 -156891110 + MLT1E LTR MaLR 1 580 -13 946 179 51 64 chr4 27397676 27397910 -156890752 - MIR SINE MIR -1 261 31 498 219 118 22 chr4 27398024 27398202 -156890460 + MIR SINE MIR 63 257 -5 5812 49 1 23 chr4 27398471 27399208 -156889454 - L1PA3 LINE L1 -3 6152 5432 691 251 11 38 chr4 27399210 27399393 -156889269 - MER5B DNA MER1_type 0 178 1 220 214 0 0 chr4 27399702 27399744 -156888918 + CT-rich Low_complexity Low_complexity 1 42 0 354 221 55 24 chr4 27399874 27400001 -156888661 - HAL1b LINE L1 -887 461 331 225 291 57 7 chr4 27400169 27400310 -156888352 - L1MEd LINE L1 -5002 1117 970 2072 139 67 14 chr4 27400494 27400840 -156887822 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr4 27401319 27401340 -156887322 + AT_rich Low_complexity Low_complexity 1 21 0 5509 134 12 22 chr4 27401340 27402320 -156886342 - L1MA4A LINE L1 0 6303 5197 2396 111 3 37 chr4 27402421 27402798 -156885864 - THE1B LTR MaLR 0 364 1 24 0 0 0 chr4 27403136 27403160 -156885502 + AT_rich Low_complexity Low_complexity 1 24 0 322 272 25 0 chr4 27404153 27404234 -156884428 - MIR3 SINE MIR -6 202 120 661 87 0 0 chr4 27454407 27454499 -156834163 + THE1B LTR MaLR 273 364 0 6718 108 48 48 chr4 27454499 27455625 -156833037 + THE1B-int LTR MaLR 1 1126 -454 820 88 0 0 chr4 27455725 27455827 -156832835 - AluJ/FLAM SINE Alu -210 102 1 186 103 0 0 chr4 27458185 27458214 -156830448 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 486 268 0 24 chr4 27460039 27460166 -156828496 - MLT1K LTR MaLR -349 239 116 1801 65 0 4 chr4 27460332 27460561 -156828101 + AluY SINE Alu 1 228 -83 305 311 89 0 chr4 27460642 27460755 -156827907 + MIR SINE MIR 22 143 -65 24 0 0 0 chr4 27460834 27460858 -156827804 + AT_rich Low_complexity Low_complexity 1 24 0 686 303 52 35 chr4 27460861 27461288 -156827374 - LTR33 LTR ERVL -2 519 9 1522 144 60 4 chr4 27461292 27461542 -156827120 + AluSx SINE Alu 1 264 -48 1015 63 0 0 chr4 27461909 27462036 -156826626 + AluY SINE Alu 184 310 -1 2195 84 0 3 chr4 27462543 27462827 -156825835 - AluSx SINE Alu -7 305 23 709 270 35 5 chr4 27463782 27463982 -156824680 - MER63A DNA MER1_type -4 206 1 27 0 0 0 chr4 27464429 27464456 -156824206 + AT_rich Low_complexity Low_complexity 1 27 0 2257 121 0 0 chr4 27464643 27464950 -156823712 + AluSx SINE Alu 1 307 -5 589 236 14 40 chr4 27465095 27465243 -156823419 - MIR SINE MIR -111 151 8 268 291 97 29 chr4 27465366 27465572 -156823090 + L1ME LINE L1 5677 5896 -274 1989 162 26 0 chr4 27466404 27466743 -156821919 - MER7A DNA MER2_type 0 346 1 415 358 52 0 chr4 27467407 27467541 -156821121 + L3 LINE CR1 1434 1574 -3 205 300 0 17 chr4 27468062 27468122 -156820540 - L3 LINE CR1 -1 1576 1518 199 333 0 0 chr4 27468732 27468804 -156819858 + MIR SINE MIR 179 250 -12 1365 205 36 8 chr4 27469712 27470103 -156818559 - MER113 DNA MER1_type? -47 474 73 413 83 0 0 chr4 27470103 27470163 -156818499 + Alu SINE Alu 1 60 -251 1861 99 7 0 chr4 27470263 27470546 -156818116 - L1P4 LINE L1 -476 5690 5406 7894 188 30 33 chr4 27470547 27473081 -156815581 - L1PA15-16 LINE L1 -4546 2303 1 418 362 181 0 chr4 27473108 27473340 -156815322 + L2 LINE L2 2989 3262 -10 442 290 34 34 chr4 27473749 27473925 -156814737 - MER5B DNA MER1_type 0 178 3 795 283 120 33 chr4 27474227 27474619 -156814043 - L2 LINE L2 -6 3307 2882 230 290 16 0 chr4 27474609 27474671 -156813991 + MIR SINE MIR 91 153 -109 * 322 327 19 10 chr4 27474915 27475019 -156813643 - MIR SINE MIR -63 145 41 203 233 0 23 chr4 27475939 27475982 -156812680 - L2 LINE L2 -17 3255 3214 232 171 0 0 chr4 27476043 27476084 -156812578 - MLT2B1 LTR ERVL 0 554 514 1752 210 21 59 chr4 27476135 27476606 -156812056 - MLT2B1 LTR ERVL -67 453 1 700 190 19 102 chr4 27477013 27477229 -156811433 - MER58C DNA MER1_type -16 199 2 181 132 132 0 chr4 27477291 27477329 -156811333 - L2 LINE L2 0 3272 3230 325 283 10 30 chr4 27478020 27478119 -156810543 + MIR SINE MIR 46 142 -120 438 129 53 18 chr4 27478256 27478427 -156810235 + (TA)n Simple_repeat Simple_repeat 1 177 0 181 57 57 0 chr4 27478439 27478474 -156810188 + (TA)n Simple_repeat Simple_repeat 2 38 0 300 160 217 75 chr4 27479057 27479163 -156809499 - MIR3 SINE MIR -6 202 82 257 289 117 107 chr4 27479217 27479525 -156809137 - L2 LINE L2 -19 3253 2943 201 258 30 0 chr4 27481198 27481264 -156807398 + (CAA)n Simple_repeat Simple_repeat 2 69 0 247 218 73 0 chr4 27482477 27482532 -156806130 + L2 LINE L2 3214 3272 0 1794 219 47 7 chr4 27483072 27483516 -156805146 - MLT1C LTR MaLR 0 467 6 207 305 85 76 chr4 27484151 27484269 -156804393 + L2 LINE L2 3144 3262 -10 505 257 56 0 chr4 27484659 27484803 -156803859 + MIR SINE MIR 41 192 -70 275 241 181 0 chr4 27486047 27486130 -156802532 + L3 LINE CR1 896 993 -584 377 305 149 50 chr4 27486160 27486481 -156802181 + L2 LINE L2 2915 3267 -5 355 302 93 22 chr4 27487143 27487282 -156801380 + L2 LINE L2 2918 3066 -206 2313 105 0 0 chr4 27488280 27488584 -156800078 + AluSq SINE Alu 1 304 -9 2224 92 0 0 chr4 27489184 27489466 -156799196 + AluSx SINE Alu 1 282 -30 267 103 0 0 chr4 27489470 27489509 -156799153 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 344 315 64 41 chr4 27489724 27489943 -156798719 - MARNA DNA Mariner -348 238 15 430 247 115 75 chr4 27490524 27490698 -156797964 + MIR SINE MIR 6 186 -76 362 306 131 0 chr4 27490698 27490858 -156797804 - MIR SINE MIR -15 247 67 367 192 0 41 chr4 27491221 27491294 -156797368 - MER8 DNA MER2_type 0 239 170 * 2378 154 4 41 chr4 27491282 27491744 -156796918 + Tigger2 DNA MER2_type 2273 2717 -1 264 107 0 126 chr4 27492016 27492119 -156796543 + (TAAAA)n Simple_repeat Simple_repeat 3 92 0 591 304 90 67 chr4 27492159 27492827 -156795835 - MER21B LTR ERV1 -157 706 24 261 0 0 0 chr4 27493586 27493615 -156795047 + (A)n Simple_repeat Simple_repeat 1 29 0 277 397 35 0 chr4 27493672 27493788 -156794874 + MIR3 SINE MIR 65 184 -24 220 146 83 0 chr4 27493913 27493961 -156794701 + L2 LINE L2 2450 2501 -813 261 0 0 0 chr4 27494288 27494317 -156794345 + (A)n Simple_repeat Simple_repeat 1 29 0 433 310 35 0 chr4 27494373 27494489 -156794173 + MIR3 SINE MIR 65 184 -24 241 289 26 13 chr4 27494492 27494568 -156794094 + MIR SINE MIR 57 133 -75 * 707 217 190 0 chr4 27494553 27494774 -156793888 + L2 LINE L2 2360 2622 -692 507 196 36 58 chr4 27494825 27494963 -156793699 - MER33 DNA MER1_type -189 135 1 354 313 41 34 chr4 27495862 27496009 -156792653 - MIR3 SINE MIR -7 201 54 1236 148 37 25 chr4 27496386 27496629 -156792033 + THE1C LTR MaLR 1 246 -129 3046 106 4 9 chr4 27496732 27497185 -156791477 + THE1C-int LTR MaLR 1130 1580 0 2216 97 86 17 chr4 27497186 27497536 -156791126 + THE1C LTR MaLR 2 375 0 244 324 54 14 chr4 27498813 27498887 -156789775 - MIR SINE MIR -136 126 50 392 314 19 44 chr4 27499054 27499213 -156789449 + L2 LINE L2 3110 3264 -8 198 297 55 22 chr4 27499786 27499877 -156788785 + L3 LINE CR1 1147 1240 -337 263 395 25 62 chr4 27500034 27500310 -156788352 + L2 LINE L2 2991 3256 -16 223 271 12 47 chr4 27501683 27501768 -156786894 - MIR SINE MIR -80 128 47 1283 204 37 79 chr4 27502419 27502826 -156785836 - MLT1B LTR MaLR 0 390 1 418 265 14 126 chr4 27503048 27503271 -156785391 + L2 LINE L2 3075 3272 0 504 301 23 10 chr4 27503287 27503466 -156785196 + MIR3 SINE MIR 3 176 -32 310 238 48 38 chr4 27504217 27504322 -156784340 + MIR SINE MIR 110 215 -47 1752 120 25 15 chr4 27504604 27504878 -156783784 - AluSx SINE Alu -9 303 27 226 292 14 14 chr4 27505252 27505324 -156783338 + MIR SINE MIR 68 139 -123 208 421 95 0 chr4 27506867 27507088 -156781574 + L2 LINE L2 2232 2473 -841 810 228 5 138 chr4 27507273 27507663 -156780999 + MLT1A1 LTR MaLR 19 356 -9 741 297 62 58 chr4 27508168 27508589 -156780073 - LTR33 LTR ERVL 0 521 96 2288 96 0 3 chr4 27508589 27508881 -156779781 - AluSg SINE Alu -19 291 1 741 297 62 58 chr4 27508881 27508978 -156779684 - LTR33 LTR ERVL -425 96 1 423 321 123 14 chr4 27509134 27509346 -156779316 + MIR SINE MIR 25 259 -3 333 226 26 116 chr4 27509493 27509683 -156778979 - Charlie4a DNA MER1_type -2 506 334 354 319 29 143 chr4 27509832 27510246 -156778416 - L2 LINE L2 0 3272 2906 604 340 44 10 chr4 27510640 27510843 -156777819 + MIR SINE MIR 46 255 -7 966 100 0 0 chr4 27512183 27512323 -156776339 + (TTTC)n Simple_repeat Simple_repeat 2 141 0 7066 62 5 0 chr4 27512325 27513439 -156775223 - L1PA7 LINE L1 -8 6146 5031 214 307 39 39 chr4 27513451 27513578 -156775084 + MIR3 SINE MIR 54 180 -28 258 324 0 0 chr4 27513999 27514067 -156774595 + L2 LINE L2 3205 3272 0 278 338 106 25 chr4 27514677 27514875 -156773787 - MIR SINE MIR -48 214 1 263 282 130 8 chr4 27515081 27515212 -156773450 - L2 LINE L2 0 3313 3167 259 226 107 0 chr4 27516197 27516281 -156772381 - MER5A DNA MER1_type -85 104 12 499 224 43 149 chr4 27517236 27517491 -156771171 + MIR SINE MIR 15 242 -20 812 233 28 19 chr4 27517526 27517741 -156770921 - MIR SINE MIR -45 217 1 183 80 0 0 chr4 27517754 27517779 -156770883 + (CTA)n Simple_repeat Simple_repeat 3 27 0 272 290 30 20 chr4 27517779 27517879 -156770783 - MIR SINE MIR -161 101 1 216 67 0 0 chr4 27518252 27518282 -156770380 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 733 311 57 4 chr4 27519919 27520167 -156768495 + L2 LINE L2 2600 2860 -454 680 263 104 43 chr4 27520178 27520505 -156768157 + L2 LINE L2 2966 3312 -1 13457 237 37 22 chr4 27520586 27525525 -156763137 - L1MA4A LINE L1 -4 7001 2013 1276 195 27 16 chr4 27525528 27525784 -156762878 - L1MA4A LINE L1 -6587 262 4 276 371 101 45 chr4 27525950 27526656 -156762006 - L2 LINE L2 -337 2977 2233 7728 241 75 31 chr4 27526673 27533211 -156755451 + L1PBa LINE L1 3 5995 -867 234 105 0 0 chr4 27533212 27533250 -156755412 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 282 0 0 0 chr4 27533293 27533326 -156755336 + L1PB2 LINE L1 5867 5899 -252 692 270 40 26 chr4 27533682 27533908 -156754754 - MLT1H1 LTR MaLR 0 555 327 186 172 0 47 chr4 27533926 27533990 -156754672 + CT-rich Low_complexity Low_complexity 2 62 0 251 221 128 35 chr4 27534067 27534153 -156754509 - MLT1H1 LTR MaLR -375 174 81 270 298 46 46 chr4 27535900 27536031 -156752631 - L3 LINE CR1 -127 1450 1320 234 376 43 6 chr4 27536050 27536212 -156752450 + MIR SINE MIR 21 188 -74 373 373 55 7 chr4 27536601 27536872 -156751790 + L2 LINE L2 2352 2635 -679 306 0 0 0 chr4 27538147 27538181 -156750481 + (TG)n Simple_repeat Simple_repeat 1 34 0 381 167 0 15 chr4 27538498 27538564 -156750098 + MER105 DNA DNA 139 203 -1 302 413 32 0 chr4 27538858 27539013 -156749649 - L3 LINE CR1 -19 1558 1399 354 332 33 70 chr4 27539308 27539552 -156749110 - HERVL40 LTR ERVL -345 2692 2458 290 222 42 0 chr4 27540015 27540087 -156748575 - HERVL40 LTR ERVL -1510 4020 3946 4431 285 59 6 chr4 27540092 27541349 -156747313 - HERVL40 LTR ERVL -1685 3845 2522 2938 280 36 47 chr4 27541348 27542086 -156746576 - HERVL40 LTR ERVL -3919 1611 887 * 186 43 0 0 chr4 27542086 27542109 -156746553 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2938 280 36 47 chr4 27542109 27542430 -156746232 - HERVL40 LTR ERVL -4643 887 564 646 260 27 130 chr4 27542468 27542837 -156745825 - HERVL40 LTR ERVL -4960 570 240 419 286 143 19 chr4 27542852 27543062 -156745600 - L2 LINE L2 0 3313 3078 201 202 12 36 chr4 27543062 27543146 -156745516 + GA-rich Low_complexity Low_complexity 2 83 0 317 284 37 0 chr4 27543332 27543413 -156745249 + L2 LINE L2 3229 3312 -1 1231 304 64 53 chr4 27543815 27544545 -156744117 - L3 LINE CR1 -206 1371 634 26 0 0 0 chr4 27544622 27544648 -156744014 + AT_rich Low_complexity Low_complexity 1 26 0 423 307 14 7 chr4 27544965 27545105 -156743557 - L2 LINE L2 -4 3309 3169 220 347 11 0 chr4 27545106 27545201 -156743461 + (TATG)n Simple_repeat Simple_repeat 4 99 0 1692 290 135 7 chr4 27545214 27545820 -156742842 + L2 LINE L2 1148 1831 -1483 2277 111 40 3 chr4 27546104 27546455 -156742207 + THE1B LTR MaLR 1 364 0 1694 264 66 39 chr4 27546467 27547014 -156741648 - L1ME3 LINE L1 -208 5954 5361 2205 63 45 0 chr4 27547014 27547301 -156741361 - AluY SINE Alu -11 300 1 1694 264 66 39 chr4 27547301 27547750 -156740912 - L1ME3 LINE L1 -801 5361 4925 827 280 89 25 chr4 27547752 27548077 -156740585 + L2 LINE L2 2968 3313 0 49 43 0 0 chr4 27548214 27548284 -156740378 + AT_rich Low_complexity Low_complexity 1 70 0 295 312 92 9 chr4 27548330 27548439 -156740223 - L2 LINE L2 -1 3271 3154 327 290 138 22 chr4 27548845 27548983 -156739679 - MIR SINE MIR -96 166 13 308 358 24 8 chr4 27549016 27549139 -156739523 - L2 LINE L2 0 3272 3148 544 315 19 6 chr4 27549751 27549913 -156738749 + MIR SINE MIR 74 237 -25 578 121 0 10 chr4 27549960 27550059 -156738603 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 216 277 15 0 chr4 27551144 27551209 -156737453 + (TATATG)n Simple_repeat Simple_repeat 6 71 0 1592 251 105 16 chr4 27551517 27552011 -156736651 - MLT1F LTR MaLR -2 540 3 250 335 160 19 chr4 27552168 27552374 -156736288 - MLT1L LTR MaLR -13 602 368 257 346 71 16 chr4 27552960 27553087 -156735575 + L2 LINE L2 3136 3269 -3 436 271 54 77 chr4 27553322 27553473 -156735189 + MIR SINE MIR 47 193 -69 2304 163 34 17 chr4 27553473 27553891 -156734771 - MSTA LTR MaLR 0 428 4 436 271 54 77 chr4 27553891 27553960 -156734702 + MIR SINE MIR 193 262 0 387 327 0 0 chr4 27554124 27554234 -156734428 + MIR SINE MIR 3 112 -150 1148 255 44 5 chr4 27554234 27554614 -156734048 - MLT1E LTR MaLR 0 593 105 230 308 225 0 chr4 27554751 27554871 -156733791 + MIR SINE MIR 109 255 -7 258 363 47 19 chr4 27555741 27555956 -156732706 + L1ME2 LINE L1 92 312 -6084 912 236 27 95 chr4 27556614 27556808 -156731854 + L1ME2 LINE L1 666 872 -5346 2258 107 0 19 chr4 27556808 27557117 -156731545 + AluSg SINE Alu 1 303 -7 912 236 27 95 chr4 27557117 27557478 -156731184 + L1ME2 LINE L1 872 1181 -5037 4927 277 69 47 chr4 27557506 27560780 -156727882 + L1ME2 LINE L1 1220 4721 -1494 1488 252 50 52 chr4 27560797 27561581 -156727081 + L1ME2 LINE L1 5099 5903 -330 311 275 84 78 chr4 27561590 27561732 -156726930 - MLT1E LTR MaLR -399 143 1 228 284 37 12 chr4 27562858 27562939 -156725723 - MIR SINE MIR -4 258 176 255 326 112 41 chr4 27563139 27563335 -156725327 + LTR33 LTR ERVL 304 513 -8 485 304 68 0 chr4 27563336 27563497 -156725165 - MIR SINE MIR -79 183 12 256 213 0 0 chr4 27563952 27563999 -156724663 + MIR SINE MIR 73 119 -143 192 323 156 0 chr4 27564007 27564103 -156724559 + L2 LINE L2 3203 3313 0 1708 188 119 12 chr4 27564112 27564533 -156724129 - L1MC3 LINE L1 -1 7784 7319 1848 143 176 20 chr4 27564573 27564964 -156723698 + LTR10A LTR ERV1 97 548 -61 472 202 153 0 chr4 27564980 27565104 -156723558 - L1MC3 LINE L1 -463 7322 7180 243 242 15 15 chr4 27565112 27565178 -156723484 - MLT1F1 LTR MaLR -466 101 36 1952 174 33 30 chr4 27565179 27565412 -156723250 - L1MC3 LINE L1 -688 7097 6861 210 37 0 0 chr4 27565412 27565439 -156723223 + (TG)n Simple_repeat Simple_repeat 2 28 0 1952 174 33 30 chr4 27565439 27565602 -156723060 - L1MC3 LINE L1 -924 6861 6700 749 226 137 66 chr4 27565740 27566121 -156722541 - MER113 DNA MER1_type? -113 408 1 1713 177 0 3 chr4 27566124 27566433 -156722229 + AluJb SINE Alu 1 308 0 21 36 0 0 chr4 27566863 27566891 -156721771 + AT_rich Low_complexity Low_complexity 1 28 0 382 287 102 57 chr4 27567394 27567723 -156720939 + MLT1G LTR MaLR 19 375 -180 871 326 51 6 chr4 27567893 27568209 -156720453 + MLT1I LTR MaLR 31 360 -49 208 374 79 22 chr4 27568299 27568526 -156720136 + L2 LINE L2 2841 3080 -192 677 339 36 0 chr4 27568608 27568832 -156719830 - MIR SINE MIR -30 232 1 251 311 92 17 chr4 27568879 27568998 -156719664 + L2 LINE L2 3168 3295 -18 228 67 0 0 chr4 27570433 27570463 -156718199 + (TG)n Simple_repeat Simple_repeat 1 30 0 200 378 49 7 chr4 27570506 27570649 -156718013 - MIR3 SINE MIR -41 167 19 1990 119 7 0 chr4 27571638 27571923 -156716739 - AluSx SINE Alu -25 287 1 2093 126 0 0 chr4 27573120 27573413 -156715249 - AluSx SINE Alu -19 293 1 313 372 82 10 chr4 27573631 27573827 -156714835 + L2 LINE L2 2561 2770 -544 276 272 11 0 chr4 27574831 27574923 -156713739 + (TA)n Simple_repeat Simple_repeat 1 93 0 326 275 132 0 chr4 27576382 27576473 -156712189 + L2 LINE L2 3160 3262 -10 998 363 81 15 chr4 27576605 27577629 -156711033 - L2 LINE L2 -94 3219 2130 180 0 0 0 chr4 27578329 27578349 -156710313 + (TG)n Simple_repeat Simple_repeat 2 21 0 1533 112 5 0 chr4 27578507 27578713 -156709949 - AluSq SINE Alu -106 207 1 225 273 182 38 chr4 27578737 27578869 -156709793 - L2 LINE L2 0 3313 3163 23 33 0 0 chr4 27578869 27578899 -156709763 + AT_rich Low_complexity Low_complexity 1 30 0 32 26 0 0 chr4 27579203 27579242 -156709420 + AT_rich Low_complexity Low_complexity 1 39 0 338 248 32 70 chr4 27579242 27579399 -156709263 + MLT1I LTR MaLR 377 527 -22 215 312 142 14 chr4 27579568 27579709 -156708953 + L2 LINE L2 2996 3154 -159 336 64 0 0 chr4 27579728 27579775 -156708887 + (CA)n Simple_repeat Simple_repeat 2 48 0 300 115 0 0 chr4 27579799 27579851 -156708811 + MLT2C2 LTR ERVL 1 52 -412 2464 90 26 32 chr4 27580950 27581327 -156707335 - THE1C LTR MaLR 0 375 1 398 320 44 63 chr4 27581570 27581886 -156706776 + MLT1I LTR MaLR 68 377 -32 258 217 0 60 chr4 27582626 27582709 -156705953 - L1MC4 LINE L1 -1351 6691 6614 230 193 18 0 chr4 27582709 27582766 -156705896 + (TA)n Simple_repeat Simple_repeat 2 59 0 270 0 0 0 chr4 27583274 27583304 -156705358 + (CA)n Simple_repeat Simple_repeat 2 31 0 574 219 51 29 chr4 27584247 27584384 -156704278 + MIR SINE MIR 65 204 -58 235 241 35 0 chr4 27584417 27584475 -156704187 + L2 LINE L2 3001 3060 -212 198 240 40 0 chr4 27584657 27584707 -156703955 + L2 LINE L2 3248 3299 -14 213 39 0 0 chr4 27584710 27584736 -156703926 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 848 313 25 4 chr4 27584777 27585017 -156703645 - MIR SINE MIR -5 257 13 216 67 0 0 chr4 27585319 27585349 -156703313 + (CA)n Simple_repeat Simple_repeat 1 30 0 25 31 0 0 chr4 27585751 27585783 -156702879 + AT_rich Low_complexity Low_complexity 1 32 0 238 317 69 30 chr4 27585790 27585891 -156702771 - MIR SINE MIR -137 125 21 22 0 0 0 chr4 27586095 27586117 -156702545 + AT_rich Low_complexity Low_complexity 1 22 0 319 208 108 8 chr4 27586144 27586264 -156702398 - L1ME4a LINE L1 -33 6088 5957 371 317 81 5 chr4 27586592 27586778 -156701884 + MIR SINE MIR 21 220 -42 276 261 11 49 chr4 27586782 27586902 -156701760 - L1ME4a LINE L1 -517 5604 5491 209 290 0 32 chr4 27587404 27587466 -156701196 - L2 LINE L2 0 3272 3213 746 268 72 23 chr4 27587491 27587797 -156700865 + Charlie4a DNA MER1_type 21 341 -167 220 356 136 0 chr4 27589539 27589657 -156699005 + MIR3 SINE MIR 14 147 -61 203 88 29 0 chr4 27589766 27589800 -156698862 + (TATG)n Simple_repeat Simple_repeat 2 36 0 266 267 19 9 chr4 27589849 27589954 -156698708 + (TA)n Simple_repeat Simple_repeat 2 107 0 2321 69 0 10 chr4 27591007 27591310 -156697352 - AluY SINE Alu -11 300 1 404 336 49 0 chr4 27591355 27591498 -156697164 + L2 LINE L2 3163 3312 -1 301 288 25 25 chr4 27591745 27591863 -156696799 - L1MC/D LINE L1 -2148 5660 5543 22 88 0 0 chr4 27592025 27592082 -156696580 + AT_rich Low_complexity Low_complexity 1 57 0 404 297 15 49 chr4 27592129 27592395 -156696267 - L1MC/D LINE L1 -1300 4846 4590 1022 209 0 0 chr4 27592456 27592647 -156696015 - AluJb SINE Alu -1 311 121 2135 122 76 15 chr4 27593376 27593719 -156694943 + THE1B LTR MaLR 1 364 0 412 299 63 29 chr4 27594708 27594915 -156693747 - L2 LINE L2 -1 3312 3099 271 301 130 0 chr4 27595104 27595227 -156693435 - MIR SINE MIR -93 169 31 199 219 0 122 chr4 27597022 27597104 -156691558 - MIR SINE MIR -11 251 180 277 325 195 13 chr4 27597246 27597400 -156691262 + MIR3 SINE MIR 4 185 -23 1875 99 0 0 chr4 27598336 27598579 -156690083 + AluSc SINE Alu 4 246 -63 258 309 14 58 chr4 27600016 27600155 -156688507 + L2 LINE L2 3135 3267 -46 40 21 0 0 chr4 27600286 27600333 -156688329 + AT_rich Low_complexity Low_complexity 1 47 0 1073 194 5 0 chr4 27600333 27600539 -156688123 - L1PA16 LINE L1 -9 6157 5951 2192 119 0 0 chr4 27650539 27650834 -156637828 + AluSq SINE Alu 9 303 -10 195 365 21 10 chr4 27651087 27651183 -156637479 + MIR SINE MIR 32 128 -134 22 0 0 0 chr4 27651515 27651537 -156637125 + AT_rich Low_complexity Low_complexity 1 22 0 4961 122 42 6 chr4 27651894 27652695 -156635967 + L1PA13 LINE L1 5329 6161 -2 514 173 0 0 chr4 27653219 27653294 -156635368 - 5S rRNA rRNA -29 92 18 4197 110 13 41 chr4 27653294 27654326 -156634336 + L1PA7 LINE L1 5076 6072 -82 393 355 18 12 chr4 27654936 27655102 -156633560 - MIR SINE MIR -94 168 2 505 142 53 13 chr4 27655789 27655898 -156632764 - MLT1A2 LTR MaLR -254 111 1 23 33 0 0 chr4 27658558 27658588 -156630074 + AT_rich Low_complexity Low_complexity 1 30 0 2215 66 0 0 chr4 27659046 27659317 -156629345 - AluY SINE Alu -37 274 4 1323 98 0 0 chr4 27660573 27660792 -156627870 + AluY SINE Alu 127 311 0 424 236 50 18 chr4 27661409 27661605 -156627057 + THE1B LTR MaLR 150 348 -16 23 0 0 0 chr4 27662276 27662299 -156626363 + AT_rich Low_complexity Low_complexity 1 23 0 707 272 88 20 chr4 27662416 27663038 -156625624 - L1 LINE L1 -1177 4969 4297 22 0 0 0 chr4 27663267 27663289 -156625373 + AT_rich Low_complexity Low_complexity 1 22 0 1997 236 71 12 chr4 27664382 27665222 -156623440 + L1MCb LINE L1 649 1543 -4851 5552 101 6 28 chr4 27666201 27667634 -156621028 - L1PA7 LINE L1 -201 5953 4562 206 304 14 0 chr4 27669405 27669474 -156619188 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 257 143 20 20 chr4 27670832 27670881 -156617781 - MLT2B1 LTR ERVL -471 49 1 8020 120 8 10 chr4 27670881 27672086 -156616576 - HERVL-B1 LTR ERVL 0 5654 4452 346 250 13 0 chr4 27672789 27672865 -156615797 - MLT1D LTR MaLR -428 77 1 2213 99 3 3 chr4 27672942 27673236 -156615426 + AluSx SINE Alu 1 294 -18 253 306 50 58 chr4 27674265 27674507 -156614155 + L2 LINE L2 2380 2619 -695 539 250 130 76 chr4 27674517 27674941 -156613721 - MLT1G3 LTR MaLR -26 523 75 647 330 64 29 chr4 27674993 27675338 -156613324 + L2 LINE L2 2617 2973 -341 566 189 14 81 chr4 27676070 27676218 -156612444 + MLT2A2 LTR ERVL 269 406 -47 715 303 149 20 chr4 27676334 27676776 -156611886 - LTR33 LTR ERVL -7 514 16 1693 149 64 10 chr4 27676918 27677213 -156611449 + AluSx SINE Alu 1 311 -1 1149 164 28 35 chr4 27678034 27678321 -156610341 - L1MA3 LINE L1 -30 6275 5991 864 156 0 7 chr4 27678311 27678465 -156610197 + L1MA3 LINE L1 5836 5988 -317 * 447 309 96 50 chr4 27678670 27679110 -156609552 - MER90 LTR ERV1 -38 576 78 936 209 105 14 chr4 27679693 27679903 -156608759 + MLT1D LTR MaLR 259 487 -18 180 179 0 0 chr4 27679941 27679980 -156608682 + (CA)n Simple_repeat Simple_repeat 2 40 0 245 329 132 20 chr4 27680871 27681023 -156607639 + MLT1J2 LTR MaLR 270 438 -12 1921 182 50 40 chr4 27681762 27682241 -156606421 + LTR2B LTR ERV1 7 490 0 2519 221 32 30 chr4 27682574 27682625 -156606037 + L1MCa LINE L1 922 971 -5455 2216 91 3 14 chr4 27682625 27682922 -156605740 + AluY SINE Alu 1 294 -17 2519 221 32 30 chr4 27682922 27683867 -156604795 + L1MCa LINE L1 971 2009 -4417 372 298 15 54 chr4 27684013 27684285 -156604377 - AluSg/x SINE Alu -29 271 90 3087 173 39 37 chr4 27685308 27686007 -156602655 + L1MC1 LINE L1 5634 6333 0 1552 167 15 4 chr4 27686103 27686373 -156602289 + MSTA LTR MaLR 4 276 -152 451 314 74 54 chr4 27686753 27686995 -156601667 - MIR SINE MIR -14 248 2 2133 231 58 82 chr4 27688311 27688646 -156600016 + L1MDa LINE L1 1721 2062 -4659 4910 95 24 7 chr4 27688646 27689362 -156599300 + L1PA8 LINE L1 5441 6168 -4 2133 231 58 82 chr4 27689362 27690114 -156598548 + L1MDa LINE L1 2062 2806 -3915 246 373 73 0 chr4 27690315 27690425 -156598237 - L2 LINE L2 0 3272 3155 1846 124 118 24 chr4 27690541 27690872 -156597790 - THE1B LTR MaLR -2 362 1 284 299 81 0 chr4 27691447 27691534 -156597128 + MIR SINE MIR 55 148 -60 10077 115 15 2 chr4 27691898 27693470 -156595192 - L1P LINE L1 -2676 3470 1878 5632 131 3 3 chr4 27693609 27694692 -156593970 - L1PA14 LINE L1 -11 6150 5069 299 127 0 18 chr4 27695332 27695387 -156593275 - MLT2A1 LTR ERVL -1 443 390 329 197 13 0 chr4 27695387 27695463 -156593199 + (TA)n Simple_repeat Simple_repeat 1 77 0 335 212 92 115 chr4 27696260 27696477 -156592185 - MIR SINE MIR -4 258 47 10809 107 9 32 chr4 27696500 27698248 -156590414 + L1P3 LINE L1 1 1708 -4753 417 290 83 7 chr4 27698674 27698819 -156589843 + MIR SINE MIR 97 252 -10 1834 129 7 11 chr4 27699065 27699371 -156589291 + AluSq SINE Alu 34 338 0 232 250 88 0 chr4 27699432 27699512 -156589150 + MLT1K LTR MaLR 371 457 -131 2162 243 54 89 chr4 27700148 27701879 -156586783 - L1MCa LINE L1 -2598 3828 2168 1887 138 42 0 chr4 27701879 27702168 -156586494 + AluSx SINE Alu 1 301 -11 2162 243 54 89 chr4 27702168 27702277 -156586385 - L1MCa LINE L1 -4258 2168 2057 250 348 57 28 chr4 27702762 27702903 -156585759 - MIR SINE MIR -111 151 7 26 30 0 0 chr4 27703097 27703130 -156585532 + AT_rich Low_complexity Low_complexity 1 33 0 236 345 198 0 chr4 27703356 27703472 -156585190 - L2 LINE L2 0 3272 3134 334 327 43 46 chr4 27703529 27703759 -156584903 - L2 LINE L2 -242 3030 2803 23 0 0 0 chr4 27705315 27705338 -156583324 + AT_rich Low_complexity Low_complexity 1 23 0 1440 106 4 21 chr4 27706109 27706345 -156582317 + L1PA10 LINE L1 5937 6168 0 207 0 0 0 chr4 27707202 27707225 -156581437 + (T)n Simple_repeat Simple_repeat 1 23 0 1824 136 41 7 chr4 27707257 27707552 -156581110 - AluSx SINE Alu -7 305 1 24 0 0 0 chr4 27708544 27708568 -156580094 + AT_rich Low_complexity Low_complexity 1 24 0 491 312 64 12 chr4 27709357 27709575 -156579087 + MIR SINE MIR 4 230 -32 206 303 15 15 chr4 27710702 27710768 -156577894 - L2 LINE L2 -38 3234 3169 2212 128 0 0 chr4 27710986 27711291 -156577371 - AluSx SINE Alu -7 305 1 285 241 51 13 chr4 27711422 27711501 -156577161 - L2 LINE L2 0 3313 3232 22 0 0 0 chr4 27712650 27712672 -156575990 + AT_rich Low_complexity Low_complexity 1 22 0 2078 133 0 0 chr4 27712672 27712965 -156575697 - AluJb SINE Alu -19 293 1 724 298 67 39 chr4 27713120 27713432 -156575230 - MLT1J1 LTR MaLR -100 346 26 2334 77 0 32 chr4 27714582 27714893 -156573769 - AluY SINE Alu -10 301 1 204 40 0 0 chr4 27715679 27715704 -156572958 + (GA)n Simple_repeat Simple_repeat 2 26 0 8672 162 38 10 chr4 27715987 27717525 -156571137 + Tigger1 DNA MER2_type 1 1581 -837 1673 213 5 11 chr4 27717538 27717905 -156570757 + L1PA16 LINE L1 5794 6158 -8 1006 128 94 15 chr4 27717915 27718118 -156570544 + L1P5 LINE L1 5571 5789 -367 260 284 0 0 chr4 27718120 27718208 -156570454 - L1MC4 LINE L1 -1340 6702 6615 300 233 0 0 chr4 27718209 27718282 -156570380 + (TA)n Simple_repeat Simple_repeat 2 74 0 1848 169 56 3 chr4 27718295 27718632 -156570030 + L1PB4 LINE L1 5789 6143 -13 3567 142 51 25 chr4 27718642 27719369 -156569293 + Tigger1 DNA MER2_type 1577 2418 0 276 333 83 14 chr4 27720185 27720329 -156568333 + MIR SINE MIR 30 183 -79 719 207 110 6 chr4 27720820 27720984 -156567678 + MSTC LTR MaLR 197 377 -51 369 220 11 11 chr4 27721115 27721206 -156567456 + MLT1K LTR MaLR 494 584 -4 24 0 0 0 chr4 27721287 27721311 -156567351 + AT_rich Low_complexity Low_complexity 1 24 0 496 331 54 19 chr4 27721538 27721909 -156566753 - L1ME LINE L1 -375 5795 5412 2099 100 23 0 chr4 27721975 27722275 -156566387 - AluSc SINE Alu 0 309 3 13606 151 78 33 chr4 27722489 27725091 -156563571 - Tigger2 DNA MER2_type 0 2718 1 455 391 46 24 chr4 27725119 27725709 -156562953 - L1MEd LINE L1 -5422 697 95 24 32 0 0 chr4 27727160 27727191 -156561471 + AT_rich Low_complexity Low_complexity 1 31 0 385 288 17 17 chr4 27727762 27727880 -156560782 + L2 LINE L2 3196 3313 0 1517 225 35 41 chr4 27728839 27729129 -156559533 - MLT1C LTR MaLR 0 467 180 2505 64 0 0 chr4 27729129 27729426 -156559236 - AluY SINE Alu -14 297 1 1517 225 35 41 chr4 27729426 27729597 -156559065 - MLT1C LTR MaLR -287 180 9 532 271 208 19 chr4 27729612 27729819 -156558843 - MIR SINE MIR -10 252 7 311 353 126 26 chr4 27730129 27730580 -156558082 + L2 LINE L2 2669 3167 -146 469 231 41 8 chr4 27731133 27731254 -156557408 + LTR33 LTR ERVL 397 521 0 1151 251 70 106 chr4 27731319 27731961 -156556701 - L2 LINE L2 -18 3295 2692 242 54 0 27 chr4 27731961 27731998 -156556664 + (TG)n Simple_repeat Simple_repeat 2 37 0 1151 251 70 106 chr4 27731998 27732188 -156556474 - L2 LINE L2 -621 2692 2497 1022 291 55 82 chr4 27732185 27732882 -156555780 - L2 LINE L2 0 3313 2640 * 266 224 26 95 chr4 27732960 27733076 -156555586 - L2 LINE L2 -885 2429 2322 200 281 34 67 chr4 27734546 27734635 -156554027 - L2 LINE L2 -6 3307 3222 484 199 8 8 chr4 27734645 27734776 -156553886 + GA-rich Low_complexity Low_complexity 2 132 0 1394 245 30 0 chr4 27735263 27735594 -156553068 - MLT1C LTR MaLR -124 343 3 1338 124 0 0 chr4 27735620 27735797 -156552865 + AluSq SINE Alu 1 177 -136 1117 137 0 16 chr4 27735917 27736099 -156552563 - AluSg/x SINE Alu -5 307 129 1950 252 62 96 chr4 27736220 27736510 -156552152 - L1MCb LINE L1 -5115 930 632 381 175 0 0 chr4 27736510 27736573 -156552089 + AluJ/FRAM SINE Alu 230 292 -10 1950 252 62 96 chr4 27736573 27737171 -156551491 - L1MCb LINE L1 -5413 632 12 415 277 36 0 chr4 27737200 27737337 -156551325 - L1MCa LINE L1 -4765 1661 1520 1123 261 75 21 chr4 27738658 27739078 -156549584 - MSTB2 LTR MaLR 0 457 1 4479 138 71 33 chr4 27739166 27740112 -156548550 + MER52C LTR ERV1 1 1277 -1 411 237 126 11 chr4 27740113 27740303 -156548359 + MER113 DNA MER1_type? 18 229 -292 283 132 113 0 chr4 27740377 27740430 -156548232 + MER113 DNA MER1_type? 348 406 -115 327 402 43 11 chr4 27741089 27741457 -156547205 - L3 LINE CR1 -275 1302 923 234 247 11 101 chr4 27741458 27741547 -156547115 - L3 LINE CR1 -609 968 888 34 0 0 0 chr4 27741551 27741585 -156547077 + AT_rich Low_complexity Low_complexity 1 34 0 677 321 47 0 chr4 27741620 27741832 -156546830 + MIR SINE MIR 41 262 0 837 98 0 0 chr4 27743175 27743318 -156545344 + (TA)n Simple_repeat Simple_repeat 2 144 0 209 287 11 10 chr4 27744303 27744501 -156544161 + (TA)n Simple_repeat Simple_repeat 1 198 0 224 242 30 0 chr4 27744427 27744493 -156544169 + (TATG)n Simple_repeat Simple_repeat 1 68 0 213 291 0 13 chr4 27745005 27745084 -156543578 - MIR SINE MIR -65 143 66 1927 107 73 3 chr4 27745086 27745375 -156543287 - AluSg SINE Alu 0 310 2 21 0 0 0 chr4 27745769 27745790 -156542872 + AT_rich Low_complexity Low_complexity 1 21 0 2241 112 3 0 chr4 27746898 27747202 -156541460 + AluSx SINE Alu 1 305 -7 230 289 170 15 chr4 27747223 27747358 -156541304 - L3 LINE CR1 -106 1471 1316 190 108 27 27 chr4 27747477 27747514 -156541148 - MIR SINE MIR -64 144 108 5621 109 19 1 chr4 27747645 27749035 -156539627 - L1PA13 LINE L1 -19 6144 4723 2911 210 25 30 chr4 27749040 27749802 -156538860 - L1PA13 LINE L1 -2210 3936 3179 * 5829 162 14 17 chr4 27749797 27751571 -156537091 - L1PB1 LINE L1 0 6151 4374 186 43 0 0 chr4 27751571 27751594 -156537068 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2006 133 0 0 chr4 27751595 27751874 -156536788 - AluSx SINE Alu -32 280 2 5829 162 14 17 chr4 27751874 27752224 -156536438 - L1PB1 LINE L1 -1776 4375 4033 1479 114 0 5 chr4 27752416 27752740 -156535922 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr4 27754339 27754362 -156534300 + AT_rich Low_complexity Low_complexity 1 23 0 236 218 248 20 chr4 27754896 27754997 -156533665 + MER5C DNA MER1_type 1 124 -200 387 336 0 8 chr4 27755266 27755391 -156533271 + L2 LINE L2 3190 3313 0 1674 183 3 3 chr4 27755892 27756182 -156532480 - AluJb SINE Alu -22 290 1 252 0 0 0 chr4 27756193 27756221 -156532441 + (T)n Simple_repeat Simple_repeat 1 28 0 286 296 56 0 chr4 27756222 27756293 -156532369 - MIR SINE MIR -63 145 71 2212 146 24 11 chr4 27756347 27756717 -156531945 - THE1C LTR MaLR 0 375 1 213 132 0 0 chr4 27757015 27757053 -156531609 + (CAA)n Simple_repeat Simple_repeat 2 39 0 800 202 71 15 chr4 27757325 27757523 -156531139 - MER3 DNA MER1_type 0 209 1 380 298 25 8 chr4 27757600 27757721 -156530941 - MER94 DNA DNA -11 123 1 213 291 12 12 chr4 27757783 27757869 -156530793 + MIR SINE MIR 94 179 -83 193 385 31 31 chr4 27757915 27758011 -156530651 + L2 LINE L2 3160 3255 -17 370 274 97 80 chr4 27760218 27760444 -156528218 + MIR SINE MIR 33 262 0 30 27 0 0 chr4 27760444 27760481 -156528181 + AT_rich Low_complexity Low_complexity 1 37 0 245 296 85 76 chr4 27761679 27761902 -156526760 - MIR SINE MIR -11 251 27 236 331 114 25 chr4 27763140 27763319 -156525343 - MIR SINE MIR -76 186 3 597 296 76 17 chr4 27764208 27764544 -156524118 + MLT2E LTR ERVL 215 618 -10 234 0 0 0 chr4 27764639 27764665 -156523997 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 275 329 24 52 chr4 27766035 27766245 -156522417 - L2 LINE L2 -243 3070 2867 497 312 13 19 chr4 27767020 27767177 -156521485 + MLT1H LTR MaLR 199 354 -195 323 313 24 53 chr4 27767450 27767658 -156521004 + L2 LINE L2 2867 3068 -245 191 188 21 0 chr4 27767725 27767773 -156520889 + (TA)n Simple_repeat Simple_repeat 1 49 0 204 40 0 0 chr4 27767847 27767872 -156520790 + (TG)n Simple_repeat Simple_repeat 2 26 0 297 294 94 0 chr4 27767928 27768013 -156520649 - MIR3 SINE MIR -15 193 101 402 340 79 17 chr4 27768346 27768722 -156519940 + MLT1J2 LTR MaLR 67 450 0 499 372 108 17 chr4 27768731 27769027 -156519635 + L2 LINE L2 2945 3267 -5 189 0 0 0 chr4 27769724 27769745 -156518917 + (A)n Simple_repeat Simple_repeat 1 21 0 307 192 13 26 chr4 27769790 27769868 -156518794 - MER116 DNA Mariner 0 80 4 214 323 21 52 chr4 27770059 27770155 -156518507 + L2 LINE L2 3179 3271 -1 194 366 61 23 chr4 27770700 27770831 -156517831 + MIR SINE MIR 53 188 -74 363 264 179 0 chr4 27771346 27771452 -156517210 - L2 LINE L2 0 3272 3148 1209 96 0 0 chr4 27772000 27772182 -156516480 - AluY SINE Alu 0 309 128 792 187 3 114 chr4 27772308 27772640 -156516022 - AluY SINE Alu -16 295 1 857 351 138 12 chr4 27775190 27775697 -156512965 - L3 LINE CR1 -1 1576 1006 1417 268 95 24 chr4 27775792 27776468 -156512194 - L1ME3 LINE L1 -8 6154 5431 495 275 15 0 chr4 27776766 27776897 -156511765 - MER94 DNA DNA 0 134 2 2009 279 22 29 chr4 27777227 27777808 -156510854 - MLT1E LTR MaLR -16 577 1 497 75 21 32 chr4 27777973 27778067 -156510595 + (TTTTC)n Simple_repeat Simple_repeat 3 95 0 267 191 0 0 chr4 27778062 27778125 -156510537 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 * 304 309 24 40 chr4 27778245 27778371 -156510291 + MIR SINE MIR 31 154 -108 332 391 6 19 chr4 27779181 27779342 -156509320 + MIR3 SINE MIR 43 201 -7 458 278 47 30 chr4 27780257 27780426 -156508236 - MIR3 SINE MIR -33 175 4 188 293 0 0 chr4 27781036 27781077 -156507585 + L3 LINE CR1 1516 1556 -21 23 33 0 0 chr4 27781796 27781826 -156506836 + AT_rich Low_complexity Low_complexity 1 30 0 346 309 75 48 chr4 27782055 27782495 -156506167 + L1ME4a LINE L1 5593 6044 -77 245 313 164 37 chr4 27784376 27784510 -156504152 - MIR3 SINE MIR -39 169 19 299 360 79 28 chr4 27785575 27785690 -156502972 - MIR SINE MIR -36 226 118 2698 102 0 0 chr4 27785690 27786053 -156502609 + THE1B LTR MaLR 2 364 0 299 360 79 28 chr4 27786053 27786151 -156502511 - MIR SINE MIR -144 118 2 957 201 0 0 chr4 27786504 27786698 -156501964 + AluJb SINE Alu 131 324 0 2011 130 0 7 chr4 27787046 27787345 -156501317 - AluSx SINE Alu -7 305 9 186 43 0 0 chr4 27787355 27787378 -156501284 + (T)n Simple_repeat Simple_repeat 1 23 0 581 242 106 19 chr4 27787378 27787539 -156501123 - FAM SINE Alu 0 175 1 256 356 7 48 chr4 27787974 27788120 -156500542 - MIR3 SINE MIR -64 144 5 386 250 0 0 chr4 27788181 27788269 -156500393 + MER94 DNA DNA 2 89 -45 480 293 102 43 chr4 27789596 27790041 -156498621 + MLT1H LTR MaLR 10 519 -30 1905 183 144 79 chr4 27790097 27790220 -156498442 + MLT1E1 LTR MaLR 10 124 -530 1866 137 3 26 chr4 27790220 27790526 -156498136 + AluSx SINE Alu 1 299 -13 1905 183 144 79 chr4 27790526 27791008 -156497654 + MLT1E1 LTR MaLR 124 654 0 235 304 173 21 chr4 27792327 27792518 -156496144 - MLT1J LTR MaLR -73 438 219 985 230 60 60 chr4 27792596 27792961 -156495701 + MLT1A1 LTR MaLR 1 365 0 249 320 52 0 chr4 27793079 27793176 -156495486 - L2 LINE L2 -3 3310 3209 364 283 0 0 chr4 27793270 27793369 -156495293 - MIR SINE MIR -18 244 146 1903 139 6 22 chr4 27793429 27793746 -156494916 - AluJb SINE Alu 0 312 1 547 243 110 17 chr4 27794157 27794330 -156494332 - MER5A DNA MER1_type 0 189 1 4423 209 69 5 chr4 27794407 27794725 -156493937 + Tigger6a DNA MER2_type 1 297 -1300 1472 235 19 22 chr4 27794725 27795091 -156493571 - MLT1A1 LTR MaLR 0 365 1 4423 209 69 5 chr4 27795091 27795790 -156492872 + Tigger6a DNA MER2_type 297 1083 0 2082 107 10 3 chr4 27795891 27796190 -156492472 - AluSc SINE Alu -8 301 1 2291 142 37 55 chr4 27796230 27796666 -156491996 - Tigger2a DNA MER2_type -6 428 1 1522 223 56 28 chr4 27796828 27797218 -156491444 - MLT1C LTR MaLR 0 467 67 181 219 123 0 chr4 27797281 27797354 -156491308 + MIR SINE MIR 105 186 -76 21 0 0 0 chr4 27797428 27797449 -156491213 + AT_rich Low_complexity Low_complexity 1 21 0 653 165 15 60 chr4 27798071 27798204 -156490458 + FLAM_A SINE Alu 1 127 -6 184 29 29 29 chr4 27798209 27798243 -156490419 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 2243 305 136 37 chr4 27798244 27799800 -156488862 + L1M4 LINE L1 2274 3983 -2163 5661 181 26 17 chr4 27799804 27801251 -156487411 - L1MA10 LINE L1 -1 6333 4869 434 278 9 0 chr4 27801276 27801391 -156487271 - MER44D DNA MER2_type -1 704 589 213 227 45 0 chr4 27801391 27801457 -156487205 + (TA)n Simple_repeat Simple_repeat 1 69 0 1413 246 36 38 chr4 27801457 27801929 -156486733 - MER44D DNA MER2_type -79 526 1 1550 213 35 8 chr4 27801929 27802329 -156486333 - L1MA10 LINE L1 -1316 4830 4420 374 214 21 91 chr4 27802330 27802517 -156486145 + L1 LINE L1 3456 3629 -2517 25 75 0 0 chr4 27803126 27803179 -156485483 + AT_rich Low_complexity Low_complexity 1 53 0 3016 209 65 44 chr4 27803293 27804344 -156484318 - L1MB8 LINE L1 -111 6067 5008 262 171 184 13 chr4 27804316 27804392 -156484270 + L1M4 LINE L1 3004 3092 -3054 * 1050 84 0 0 chr4 27804513 27804644 -156484018 - AluSg SINE Alu -179 131 1 344 289 139 50 chr4 27805263 27805443 -156483219 + L2 LINE L2 3118 3313 0 285 291 78 10 chr4 27806084 27806187 -156482475 - MIR3 SINE MIR -49 159 50 231 146 0 0 chr4 27807263 27807304 -156481358 + (TG)n Simple_repeat Simple_repeat 1 41 0 236 273 20 0 chr4 27808201 27808300 -156480362 + (TTATA)n Simple_repeat Simple_repeat 5 105 0 31 26 0 0 chr4 27809005 27809043 -156479619 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr4 27809319 27809343 -156479319 + AT_rich Low_complexity Low_complexity 1 24 0 2328 8 0 0 chr4 27809582 27809847 -156478815 + L1PA2 LINE L1 5889 6153 -2 289 368 50 5 chr4 27810153 27810354 -156478308 + L2 LINE L2 516 725 -2589 232 318 119 40 chr4 27810535 27810686 -156477976 + MER5B DNA MER1_type 16 178 0 423 358 90 27 chr4 27810700 27811286 -156477376 + L2 LINE L2 976 1598 -1716 465 298 58 24 chr4 27811320 27811525 -156477137 + MIR SINE MIR 38 249 -13 929 362 26 22 chr4 27811592 27812128 -156476534 + L2 LINE L2 1720 2257 -1057 232 308 26 83 chr4 27812138 27812294 -156476368 + MIR SINE MIR 7 153 -109 236 349 102 18 chr4 27812384 27812550 -156476112 + L2 LINE L2 2239 2418 -896 21 0 0 0 chr4 27812637 27812658 -156476004 + AT_rich Low_complexity Low_complexity 1 21 0 52 17 0 0 chr4 27812716 27812775 -156475887 + AT_rich Low_complexity Low_complexity 1 59 0 635 333 37 9 chr4 27813028 27813596 -156475066 - L1MEd LINE L1 -3345 3037 2454 23 0 0 0 chr4 27813648 27813671 -156474991 + AT_rich Low_complexity Low_complexity 1 23 0 314 326 81 0 chr4 27813991 27814163 -156474499 - L1MEd LINE L1 -4649 1735 1550 26 30 0 0 chr4 27814213 27814246 -156474416 + AT_rich Low_complexity Low_complexity 1 33 0 291 351 51 20 chr4 27814346 27814569 -156474093 + MIR SINE MIR 18 253 -9 569 320 56 2 chr4 27814724 27815144 -156473518 - L1MEd LINE L1 -4862 1510 1159 211 294 0 0 chr4 27815637 27815705 -156472957 + (TA)n Simple_repeat Simple_repeat 2 69 0 320 386 62 45 chr4 27815751 27816173 -156472489 + L2 LINE L2 2549 2977 -337 357 366 34 75 chr4 27816233 27816501 -156472161 + L2 LINE L2 2997 3253 -19 195 100 0 0 chr4 27817564 27817594 -156471068 + (T)n Simple_repeat Simple_repeat 1 30 0 22 35 0 0 chr4 27817863 27817892 -156470770 + AT_rich Low_complexity Low_complexity 1 29 0 468 329 46 32 chr4 27819480 27819696 -156468966 + MIR SINE MIR 44 262 0 301 327 27 9 chr4 27819680 27819790 -156468872 - MIR SINE MIR -99 163 52 * 21 36 0 0 chr4 27819823 27819851 -156468811 + AT_rich Low_complexity Low_complexity 1 28 0 2591 80 24 104 chr4 27819865 27820315 -156468347 + L1PA11 LINE L1 5757 6170 -4 24 32 0 0 chr4 27820323 27820354 -156468308 + AT_rich Low_complexity Low_complexity 1 31 0 1593 282 109 60 chr4 27820380 27821060 -156467602 - HAL1 LINE L1 -130 2377 1732 2412 149 23 30 chr4 27821060 27821496 -156467166 + Tigger2a DNA MER2_type 2 434 0 1593 282 109 60 chr4 27821496 27821580 -156467082 - HAL1 LINE L1 -775 1732 1654 1655 111 0 4 chr4 27821580 27821806 -156466856 + AluSq SINE Alu 86 310 -3 1593 282 109 60 chr4 27821806 27822558 -156466104 - HAL1 LINE L1 -853 1654 786 256 244 191 23 chr4 27822959 27823090 -156465572 - HAL1 LINE L1 -2117 390 238 316 238 25 25 chr4 27823201 27823281 -156465381 + MLT1G1 LTR MaLR 1 80 -515 1061 274 128 30 chr4 27823338 27823805 -156464857 + MLT1G1 LTR MaLR 83 595 0 354 198 25 12 chr4 27823823 27823904 -156464758 + HsTC2 DNA Tc2 1807 1888 -10 302 273 149 39 chr4 27823940 27824094 -156464568 - HAL1 LINE L1 -2328 179 9 342 0 0 0 chr4 27824168 27824206 -156464456 + (TG)n Simple_repeat Simple_repeat 2 39 0 2015 88 49 14 chr4 27824917 27825201 -156463461 + AluY SINE Alu 18 311 0 279 289 0 35 chr4 27825312 27825426 -156463236 + LTR67 LTR ERVL 445 554 -3 375 182 0 0 chr4 27826494 27826571 -156462091 + CT-rich Low_complexity Low_complexity 2 78 0 361 288 54 81 chr4 27828347 27828630 -156460032 - MIR SINE MIR 0 262 2 322 331 31 15 chr4 27829464 27829594 -156459068 - MIR3 SINE MIR -16 192 61 1930 249 75 25 chr4 27829775 27830373 -156458289 + MER92B LTR ERV1 1 628 -8 454 322 25 25 chr4 27830467 27830669 -156457993 + MIR SINE MIR 49 250 -12 227 280 72 40 chr4 27830693 27830818 -156457844 - MIR SINE MIR -34 228 100 342 115 0 0 chr4 27831712 27831764 -156456898 + (TCCA)n Simple_repeat Simple_repeat 1 52 0 334 399 54 15 chr4 27832450 27832653 -156456009 + L2 LINE L2 3027 3237 -35 188 304 36 0 chr4 27832743 27832799 -156455863 + L2 LINE L2 2240 2297 -1017 222 344 43 43 chr4 27833108 27833201 -156455461 + L2 LINE L2 3106 3198 -74 268 302 123 0 chr4 27833404 27833510 -156455152 + MIR SINE MIR 138 256 -6 207 0 0 0 chr4 27834187 27834210 -156454452 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 279 306 22 15 chr4 27835276 27835410 -156453252 - MARNA DNA Mariner -305 281 147 519 272 69 16 chr4 27835460 27835706 -156452956 + MIR SINE MIR 3 261 -1 305 252 65 9 chr4 27835773 27835880 -156452782 - MIR SINE MIR -73 189 77 351 322 63 21 chr4 27837853 27837996 -156450666 - MIR3 SINE MIR -28 180 32 282 384 0 27 chr4 27838308 27838454 -156450208 + MER117 DNA MER1_type 4 145 -52 249 83 0 0 chr4 27838728 27838764 -156449898 + (TG)n Simple_repeat Simple_repeat 2 37 0 226 303 71 20 chr4 27839741 27839840 -156448822 - L2 LINE L2 -8 3305 3202 318 190 16 99 chr4 27840353 27840385 -156448277 - L1ME4a LINE L1 -43 6078 6045 978 198 90 100 chr4 27840385 27840785 -156447877 + MSTD LTR MaLR 1 396 0 318 190 16 99 chr4 27840785 27840873 -156447789 - L1ME4a LINE L1 -76 6045 5968 308 147 29 29 chr4 27841531 27841599 -156447063 - MIR SINE MIR -138 124 57 452 280 47 66 chr4 27841697 27841908 -156446754 + L2 LINE L2 3107 3313 0 7179 194 75 24 chr4 27841982 27844866 -156443796 + L1MC1 LINE L1 20 3149 -3277 5470 207 30 40 chr4 27844873 27847149 -156441513 + L1MC1 LINE L1 4341 6613 0 792 347 70 37 chr4 27848996 27849686 -156438976 - L2 LINE L2 -85 3228 2508 21 0 0 0 chr4 27849914 27849935 -156438727 + AT_rich Low_complexity Low_complexity 1 21 0 349 260 97 19 chr4 27849951 27850105 -156438557 + L1ME4a LINE L1 5835 6000 -121 21 36 0 0 chr4 27850113 27850141 -156438521 + AT_rich Low_complexity Low_complexity 1 28 0 386 298 35 40 chr4 27851419 27851648 -156437014 + MER115 DNA AcHobo 2 226 -467 598 283 50 66 chr4 27851948 27852146 -156436516 - MER63B DNA MER1_type 0 1062 16 446 183 135 0 chr4 27852160 27852264 -156436398 + MER115 DNA AcHobo 568 685 -8 553 204 96 113 chr4 27852548 27852788 -156435874 - Charlie1 DNA MER1_type -2523 238 3 368 326 9 17 chr4 27853492 27853649 -156435013 - MER5A DNA MER1_type -22 156 12 1051 171 288 29 chr4 27853782 27854091 -156434571 + MLT1B LTR MaLR 2 390 0 215 245 19 0 chr4 27855353 27855406 -156433256 - MIR SINE MIR -108 154 101 298 242 30 0 chr4 27855512 27855578 -156433084 - MER81 DNA DNA 0 114 47 2208 100 10 0 chr4 27855698 27855987 -156432675 + AluSq SINE Alu 1 292 -21 552 262 55 14 chr4 27856348 27856493 -156432169 - MIR SINE MIR -110 152 2 2387 100 0 0 chr4 27856871 27857180 -156431482 + AluSc SINE Alu 1 309 0 287 281 11 22 chr4 27857232 27857321 -156431341 + L1M3de LINE L1 928 1015 -5638 1556 297 106 0 chr4 27857353 27857777 -156430885 + L1M3de LINE L1 935 1403 -5250 520 223 154 43 chr4 27857855 27858043 -156430619 - MLT1J LTR MaLR -203 308 100 395 203 0 0 chr4 27858815 27858889 -156429773 - MLT1B LTR MaLR 0 390 317 1021 166 34 0 chr4 27858889 27859064 -156429598 - MLT1B LTR MaLR -209 181 1 1982 132 7 13 chr4 27859179 27859482 -156429180 - AluY SINE Alu -8 303 3 806 276 134 16 chr4 27860172 27860538 -156428124 - MLT1I LTR MaLR 0 409 1 980 304 123 32 chr4 27860542 27861279 -156427383 - L2 LINE L2 0 3313 2500 221 323 16 0 chr4 27861603 27861665 -156426997 - L2 LINE L2 0 3272 3210 2413 68 0 0 chr4 27861792 27862120 -156426542 + AluY SINE Alu 1 328 0 617 277 68 10 chr4 27862167 27862373 -156426289 + MER58A DNA MER1_type 7 224 0 965 230 42 5 chr4 27863535 27863748 -156424914 + MER58A DNA MER1_type 1 221 -3 261 250 15 0 chr4 27864913 27864981 -156423681 + (TATATG)n Simple_repeat Simple_repeat 5 73 0 6777 186 70 33 chr4 27865142 27866827 -156421835 + MER52A LTR ERV1 1 1755 0 218 274 62 62 chr4 27868602 27868715 -156419947 + L2 LINE L2 2766 2878 -436 274 233 33 0 chr4 27868744 27868804 -156419858 + L2 LINE L2 3243 3304 -9 181 333 53 18 chr4 27868845 27868959 -156419703 + MIR SINE MIR 105 222 -40 376 378 60 16 chr4 27869079 27869328 -156419334 - MIR SINE MIR 0 262 3 259 104 15 45 chr4 27869464 27869531 -156419131 + (TTTTTG)n Simple_repeat Simple_repeat 4 68 0 253 221 189 21 chr4 27869761 27869856 -156418806 - MIR SINE MIR -89 173 63 1104 164 68 0 chr4 27872300 27872520 -156416142 + MER96B DNA MER1_type? 1 235 -182 439 325 98 0 chr4 27872848 27873011 -156415651 + MIR SINE MIR 51 229 -33 277 386 39 13 chr4 27873528 27873681 -156414981 - L2 LINE L2 -9 3263 3107 207 292 0 0 chr4 27875006 27875054 -156413608 - MER5A DNA MER1_type -86 103 56 662 203 35 7 chr4 27875892 27876035 -156412627 + MER69 DNA AcHobo 1 147 -2379 261 320 16 49 chr4 27876090 27876212 -156412450 + MIR SINE MIR 29 146 -62 182 133 0 44 chr4 27877080 27877096 -156411566 + (GAAA)n Simple_repeat Simple_repeat 3 18 -27 3952 23 0 0 chr4 27877096 27877527 -156411135 + SVA Other Other 955 1385 -1 182 133 0 44 chr4 27877527 27877555 -156411107 + (GAAA)n Simple_repeat Simple_repeat 18 45 0 407 306 155 9 chr4 27877556 27877775 -156410887 - MIR SINE MIR -1 261 11 35 0 0 0 chr4 27877808 27877843 -156410819 + AT_rich Low_complexity Low_complexity 1 35 0 2182 110 0 49 chr4 27877866 27878194 -156410468 + AluSx SINE Alu 1 312 0 279 403 35 7 chr4 27878824 27878968 -156409694 - L2 LINE L2 0 3272 3125 276 323 108 38 chr4 27879121 27879307 -156409355 + MIR SINE MIR 21 219 -43 529 225 33 8 chr4 27879835 27879955 -156408707 - LTR67 LTR ERVL 0 557 435 2235 120 0 0 chr4 27880221 27880529 -156408133 + AluSx SINE Alu 1 308 -4 402 271 135 8 chr4 27880929 27881062 -156407600 - MER5A DNA MER1_type 0 189 40 244 291 142 24 chr4 27881557 27881684 -156406978 + MIR3 SINE MIR 66 207 -1 2121 102 7 7 chr4 27883096 27883380 -156405282 + AluSx SINE Alu 1 284 -28 201 39 0 0 chr4 27883385 27883411 -156405251 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 792 270 116 36 chr4 27883590 27884299 -156404363 - L1ME3A LINE L1 -229 5941 5165 500 283 41 47 chr4 27884669 27885178 -156403484 - L1ME3A LINE L1 -2896 3250 2745 288 267 77 9 chr4 27885251 27885472 -156403190 - L1ME3A LINE L1 -3693 2453 2218 1690 181 0 26 chr4 27885481 27885791 -156402871 - AluJo SINE Alu -10 302 1 206 256 0 51 chr4 27885896 27886013 -156402649 + T-rich Low_complexity Low_complexity 1 111 0 233 355 37 32 chr4 27886435 27886624 -156402038 - HAL1 LINE L1 -947 1560 1371 345 340 44 22 chr4 27887406 27887677 -156400985 - L1ME4a LINE L1 -156 5965 5689 420 278 24 32 chr4 27888101 27888227 -156400435 - MIR SINE MIR -117 145 21 196 125 0 42 chr4 27890465 27890513 -156398149 + (GAAAA)n Simple_repeat Simple_repeat 3 48 0 583 293 81 16 chr4 27895574 27895894 -156392768 - L2 LINE L2 -259 3054 2720 483 330 127 60 chr4 27896045 27896612 -156392050 - L2 LINE L2 -337 2977 2373 255 304 36 0 chr4 27896858 27896970 -156391692 + (TATATG)n Simple_repeat Simple_repeat 3 118 0 181 393 92 30 chr4 27897049 27897377 -156391285 - L2 LINE L2 -842 2472 2125 21592 165 34 17 chr4 27898949 27900623 -156388039 - L1 LINE L1 -1346 6219 4574 2005 125 0 13 chr4 27900623 27900927 -156387735 - AluSc SINE Alu -9 300 1 21592 165 34 17 chr4 27900927 27903254 -156385408 - L1 LINE L1 -2991 4574 2070 510 46 0 0 chr4 27903254 27903319 -156385343 + (TC)n Simple_repeat Simple_repeat 2 66 0 21592 165 34 17 chr4 27903319 27905414 -156383248 - L1 LINE L1 -5495 2070 12 38 61 0 0 chr4 27905423 27905489 -156383173 + AT_rich Low_complexity Low_complexity 1 66 0 423 296 156 45 chr4 27905596 27906019 -156382643 - L1M4 LINE L1 -1112 5034 4565 1274 186 63 39 chr4 27906565 27906850 -156381812 + AluJo SINE Alu 1 292 -20 603 281 86 17 chr4 27907290 27907813 -156380849 - L1MEc LINE L1 -3284 2845 2287 21 0 0 0 chr4 27907992 27908013 -156380649 + AT_rich Low_complexity Low_complexity 1 21 0 12403 227 40 14 chr4 27908069 27908481 -156380181 - L1PA16 LINE L1 -1 7603 7203 2278 164 48 14 chr4 27908481 27908895 -156379767 + MSTA LTR MaLR 1 428 0 12403 227 40 14 chr4 27908895 27911069 -156377593 - L1PA16 LINE L1 -401 7203 5087 201 74 0 0 chr4 27911069 27911096 -156377566 + (TTG)n Simple_repeat Simple_repeat 3 29 0 12403 227 40 14 chr4 27911096 27913732 -156374930 - L1PA16 LINE L1 -2517 5087 2214 2698 97 11 3 chr4 27913881 27914253 -156374409 - THE1C LTR MaLR 0 375 1 614 273 99 51 chr4 27914694 27915523 -156373139 - L1MEc LINE L1 -4655 1655 787 24 32 0 0 chr4 27916032 27916063 -156372599 + AT_rich Low_complexity Low_complexity 1 31 0 925 191 122 39 chr4 27916296 27916629 -156372033 - MER113 DNA MER1_type? -74 447 87 381 200 0 0 chr4 27916629 27916709 -156371953 + MER116 DNA Mariner 1 80 0 197 360 98 49 chr4 27919075 27919239 -156369423 + MIR3 SINE MIR 10 181 -27 225 351 20 7 chr4 27919652 27919803 -156368859 - L1M4 LINE L1 -556 5628 5476 226 309 0 22 chr4 27920418 27920554 -156368108 - L1M4 LINE L1 -972 5387 5255 251 281 25 99 chr4 27920751 27920872 -156367790 - MLT1H LTR MaLR -6 543 432 490 313 98 34 chr4 27920903 27921168 -156367494 - MLT1H LTR MaLR -198 351 70 12935 37 0 0 chr4 27921219 27923536 -156365126 - L1PA4 LINE L1 -11 6144 3820 983 229 130 33 chr4 27923614 27923976 -156364686 + MLT2C1 LTR ERVL 1 397 0 31 92 0 0 chr4 27924078 27924165 -156364497 + AT_rich Low_complexity Low_complexity 1 87 0 881 236 76 18 chr4 27924308 27924638 -156364024 - L1MCa LINE L1 -4928 1636 1288 2988 246 59 45 chr4 27924649 27925652 -156363010 - L1MCa LINE L1 -4851 1194 178 444 19 0 0 chr4 27925688 27925741 -156362921 + (TG)n Simple_repeat Simple_repeat 1 53 0 279 0 0 0 chr4 27925892 27925905 -156362757 + (TG)n Simple_repeat Simple_repeat 1 44 0 279 0 0 0 chr4 27925905 27925936 -156362726 + (TG)n Simple_repeat Simple_repeat 2 32 0 378 405 56 36 chr4 27925977 27926229 -156362433 - L1MEc LINE L1 -5450 669 413 402 121 0 0 chr4 27926247 27926313 -156362349 + (TG)n Simple_repeat Simple_repeat 2 67 0 28 0 0 0 chr4 27926686 27926714 -156361948 + AT_rich Low_complexity Low_complexity 1 28 0 783 304 0 36 chr4 27926787 27927037 -156361625 + MIR SINE MIR 8 248 -14 262 311 56 0 chr4 27927558 27927648 -156361014 - L2 LINE L2 -46 3226 3132 230 416 26 0 chr4 27927708 27927821 -156360841 - L1MEd LINE L1 -5468 651 536 191 333 8 65 chr4 27927939 27928062 -156360600 - L2 LINE L2 -209 3063 2948 220 387 21 16 chr4 27928337 27928523 -156360139 - L2 LINE L2 -674 2640 2454 394 250 87 0 chr4 27929167 27929271 -156359391 - L2 LINE L2 -16 3256 3144 461 240 8 58 chr4 27929338 27929459 -156359203 + L2 LINE L2 3198 3312 -1 932 273 137 62 chr4 27929815 27930364 -156358298 + MLT1G LTR MaLR 6 590 0 402 149 11 21 chr4 27930459 27930553 -156358109 + T-rich Low_complexity Low_complexity 2 94 0 1503 176 66 84 chr4 27931013 27931451 -156357211 + MSTB1 LTR MaLR 1 430 -2 1831 151 21 7 chr4 27932565 27932866 -156355796 + AluSx SINE Alu 3 307 0 194 297 27 61 chr4 27933307 27933455 -156355207 + L2 LINE L2 192 334 -2980 777 338 106 36 chr4 27933460 27933884 -156354778 + L2 LINE L2 308 806 -2508 494 114 13 0 chr4 27933884 27933963 -156354699 + MADE1 DNA Mariner 1 80 0 777 338 106 36 chr4 27933963 27934266 -156354396 + L2 LINE L2 806 1086 -2228 310 189 18 0 chr4 27934285 27934353 -156354309 - MLT1A1 LTR MaLR 0 646 489 1440 214 137 28 chr4 27934356 27934803 -156353859 - MLT1E1 LTR MaLR -42 612 97 401 322 181 56 chr4 27934862 27935344 -156353318 + L2 LINE L2 1103 1644 -1670 225 180 0 0 chr4 27935383 27935433 -156353229 + L1MD3 LINE L1 7934 7983 -12 852 330 154 25 chr4 27935473 27936188 -156352474 + L2 LINE L2 1751 2557 -757 1253 257 56 10 chr4 27936336 27936673 -156351989 - MLT1A1 LTR MaLR -22 420 1 259 301 0 0 chr4 27936823 27936896 -156351766 + MER94 DNA DNA 62 134 0 341 335 23 34 chr4 27937077 27937253 -156351409 + L2 LINE L2 2174 2347 -967 239 306 54 0 chr4 27937242 27937353 -156351309 - MIR SINE MIR 0 262 146 * 1195 225 53 82 chr4 27937430 27937808 -156350854 - MLT2D LTR ERVL -41 373 7 416 323 39 23 chr4 27937826 27937956 -156350706 - MIR SINE MIR -120 142 11 1019 212 64 29 chr4 27938497 27938843 -156349819 + MSTD LTR MaLR 3 396 0 6915 223 21 49 chr4 27938843 27940628 -156348034 + MSTD-int LTR MaLR 1 1735 0 965 207 63 47 chr4 27940628 27940985 -156347677 + MSTD LTR MaLR 1 395 -1 181 382 15 0 chr4 27941030 27941098 -156347564 + L2 LINE L2 3245 3313 0 867 285 27 19 chr4 27942039 27942299 -156346363 + MIR SINE MIR 1 262 0 30 0 0 0 chr4 27942568 27942598 -156346064 + AT_rich Low_complexity Low_complexity 1 30 0 1301 163 0 0 chr4 27942997 27943206 -156345456 + MER2 DNA MER2_type 1 209 -136 29 28 0 0 chr4 27943228 27943264 -156345398 + AT_rich Low_complexity Low_complexity 1 36 0 228 333 0 12 chr4 27943461 27943542 -156345120 + MIR SINE MIR 26 105 -157 220 286 0 0 chr4 27943582 27943631 -156345031 + L2 LINE L2 3248 3296 -17 460 205 106 66 chr4 27943868 27944019 -156344643 - MLT1H1 LTR MaLR 0 595 439 687 321 31 63 chr4 27944116 27944499 -156344163 - MLT1H1 LTR MaLR -184 371 1 2359 102 0 0 chr4 27944556 27944859 -156343803 - AluSq SINE Alu -9 304 2 341 301 37 44 chr4 27944986 27945122 -156343540 + MIR SINE MIR 57 191 -71 441 326 32 83 chr4 27946268 27946703 -156341959 + L2 LINE L2 1902 2314 -1000 190 205 48 84 chr4 27946794 27946877 -156341785 + L2 LINE L2 2331 2410 -904 230 342 125 35 chr4 27947207 27947375 -156341287 + L2 LINE L2 2580 2731 -583 2465 114 17 3 chr4 27947375 27947734 -156340928 + THE1B LTR MaLR 1 364 0 230 342 125 35 chr4 27947734 27947884 -156340778 + L2 LINE L2 2731 2927 -387 209 367 64 9 chr4 27948025 27948134 -156340528 + L2 LINE L2 3158 3272 0 373 275 18 18 chr4 27949103 27949270 -156339392 + (CA)n Simple_repeat Simple_repeat 1 167 0 216 0 0 0 chr4 27949310 27949334 -156339328 + (CA)n Simple_repeat Simple_repeat 2 25 0 349 373 27 9 chr4 27949424 27949644 -156339018 + MIR SINE MIR 13 236 -26 221 343 14 0 chr4 27949765 27949838 -156338824 + L2 LINE L2 2445 2518 -796 260 280 224 9 chr4 27950110 27950217 -156338445 + L2 LINE L2 3142 3271 -1 6164 56 0 0 chr4 27951827 27952591 -156336071 - L1PA6 LINE L1 -2 6152 5389 202 130 0 65 chr4 27952737 27952783 -156335879 - L2 LINE L2 0 3313 3271 4316 264 86 19 chr4 27952806 27955591 -156333071 - L1ME1 LINE L1 -3 6232 3250 729 254 43 47 chr4 27955653 27955684 -156332978 - L1ME1 LINE L1 -4555 1841 1811 2107 81 3 0 chr4 27955684 27955969 -156332693 - L1PA10 LINE L1 -4 6164 5879 729 254 43 47 chr4 27955969 27956216 -156332446 - L1ME1 LINE L1 -4585 1811 1564 629 224 64 0 chr4 27956318 27956443 -156332219 - FLAM_C SINE Alu 0 133 1 1138 155 93 25 chr4 27956445 27956723 -156331939 - L1MC3 LINE L1 -7 7778 7482 319 279 15 73 chr4 27956765 27956969 -156331693 - L1ME1 LINE L1 -4910 1307 1116 2327 260 17 32 chr4 27957006 27957756 -156330906 - L1ME1 LINE L1 -5424 972 234 996 289 113 20 chr4 27957788 27958238 -156330424 + L2 LINE L2 2081 2572 -742 2453 194 49 16 chr4 27958485 27959057 -156329605 - L1MD3 LINE L1 -1 7994 7404 273 250 48 48 chr4 27959057 27959141 -156329521 - MLT1F1 LTR MaLR -442 125 42 784 206 25 0 chr4 27959146 27959350 -156329312 - L1MD3 LINE L1 -920 7075 6867 207 100 0 0 chr4 27961643 27961673 -156326989 + (A)n Simple_repeat Simple_repeat 1 30 0 190 318 0 16 chr4 27962771 27962834 -156325828 + L2 LINE L2 3207 3268 -4 192 354 15 15 chr4 27962860 27962925 -156325737 - L3b LINE CR1 -5 1578 1514 * 297 284 14 92 chr4 27962921 27963062 -156325600 - MIR3 SINE MIR -43 165 36 534 154 0 28 chr4 27964425 27964568 -156324094 + CT-rich Low_complexity Low_complexity 2 140 0 1942 125 86 49 chr4 27964856 27965264 -156323398 - L1MA7 LINE L1 -6 6285 5863 389 178 20 8 chr4 27965260 27965362 -156323300 + L1MA7 LINE L1 5746 5843 -340 * 3437 149 45 16 chr4 27965608 27966254 -156322408 + L1PB4 LINE L1 5491 6155 -1 28 0 0 0 chr4 27966384 27966412 -156322250 + AT_rich Low_complexity Low_complexity 1 28 0 889 192 0 0 chr4 27966567 27966734 -156321928 + L1MB2 LINE L1 5998 6164 -7 2165 114 21 0 chr4 27967280 27967570 -156321092 + AluSx SINE Alu 1 296 -16 491 85 12 37 chr4 27967996 27968078 -156320584 - MADE1 DNA Mariner 0 80 1 2083 186 96 4 chr4 27968078 27968568 -156320094 - L1MA8 LINE L1 -12 6279 5745 3016 88 55 2 chr4 27968568 27968599 -156320063 - MLT2A1 LTR ERVL 0 444 416 252 59 0 0 chr4 27968599 27968633 -156320029 + (TA)n Simple_repeat Simple_repeat 2 35 0 3016 88 55 2 chr4 27968633 27969023 -156319639 - MLT2A1 LTR ERVL -28 416 1 42945 82 11 9 chr4 27969023 27974664 -156313998 - HERVL-A1-A1 LTR ERVL 0 5654 1 3345 76 7 11 chr4 27974664 27975110 -156313552 - MLT2A1 LTR ERVL 0 444 1 5775 184 60 8 chr4 27975114 27976806 -156311856 - L1MA8 LINE L1 -546 5745 3956 1781 168 26 45 chr4 27977341 27977723 -156310939 - THE1C LTR MaLR 0 375 1 2018 89 41 0 chr4 27977962 27978233 -156310429 - AluSx SINE Alu 0 312 31 3636 229 58 53 chr4 27978260 27979524 -156309138 + L1MC4 LINE L1 6772 8041 -1 197 345 67 17 chr4 27979550 27979669 -156308993 - L2 LINE L2 -12 3260 3136 209 300 38 25 chr4 27979743 27979823 -156308839 + L2 LINE L2 2700 2780 -534 251 250 25 25 chr4 27979842 27979922 -156308740 + MER117 DNA MER1_type 12 91 -106 1821 206 85 2 chr4 27979987 27980410 -156308252 - MLT1C LTR MaLR -2 465 8 413 339 24 6 chr4 27980640 27980808 -156307854 + L2 LINE L2 3118 3288 -25 2273 135 35 65 chr4 27983428 27983859 -156304803 - MSTB1 LTR MaLR -12 420 3 2744 243 35 6 chr4 27984127 27984760 -156303902 + MER82 DNA MER2_type 2 652 -1 213 344 46 92 chr4 27985111 27985329 -156303333 - L2 LINE L2 -36 3236 3029 785 280 0 0 chr4 27985732 27985918 -156302744 + MER5A DNA MER1_type 4 189 0 445 282 154 6 chr4 27986262 27986418 -156302244 + MER5A DNA MER1_type 11 189 0 552 294 112 11 chr4 27986543 27986730 -156301932 - MIR SINE MIR -21 241 36 1905 158 57 14 chr4 27987247 27987596 -156301066 - THE1B LTR MaLR 0 364 1 822 276 22 4 chr4 27988721 27988946 -156299716 + L3b LINE CR1 1109 1337 -246 2108 139 0 19 chr4 27989052 27989369 -156299293 + AluSx SINE Alu 1 311 -1 234 0 0 0 chr4 27990764 27990790 -156297872 + (T)n Simple_repeat Simple_repeat 1 26 0 269 268 24 47 chr4 27991076 27991203 -156297459 + LTR67 LTR ERVL 432 555 -2 358 366 26 21 chr4 27991416 27991610 -156297052 + L3 LINE CR1 586 780 -797 3656 192 47 46 chr4 27991617 27992481 -156296181 - L1MB8 LINE L1 0 6178 5303 2398 74 0 7 chr4 27992481 27992779 -156295883 - AluY SINE Alu -15 296 1 3656 192 47 46 chr4 27992779 27993472 -156295190 - L1MB8 LINE L1 -875 5303 4613 21 0 0 0 chr4 27993842 27993863 -156294799 + AT_rich Low_complexity Low_complexity 1 21 0 364 317 77 40 chr4 27994610 27995868 -156292794 - L1M4 LINE L1 -953 5193 3889 1405 230 74 35 chr4 27995889 27996388 -156292274 + L1MA9 LINE L1 5766 6289 -23 370 307 14 0 chr4 27996592 27996732 -156291930 - L1M4 LINE L1 -2581 3565 3424 477 268 24 8 chr4 27996993 27997116 -156291546 - L2 LINE L2 0 3313 3189 22 35 0 0 chr4 27997330 27997359 -156291303 + AT_rich Low_complexity Low_complexity 1 29 0 250 297 214 6 chr4 27997579 27997761 -156290901 - HAL1 LINE L1 -784 1723 1504 24 0 0 0 chr4 27997790 27997814 -156290848 + AT_rich Low_complexity Low_complexity 1 24 0 346 348 57 54 chr4 27997894 27998210 -156290452 - L1MEd LINE L1 -4886 1233 917 270 256 33 8 chr4 27999330 27999451 -156289211 + (TTATA)n Simple_repeat Simple_repeat 1 124 0 24 0 0 0 chr4 28000966 28000990 -156287672 + AT_rich Low_complexity Low_complexity 1 24 0 190 382 11 22 chr4 28001247 28001336 -156287326 - MER5A DNA MER1_type -38 151 64 301 100 0 0 chr4 28001336 28001376 -156287286 + LTR7 LTR ERV1 1 40 -410 2177 157 45 23 chr4 28001396 28001836 -156286826 + LTR7 LTR ERV1 1 450 0 932 188 188 17 chr4 28002231 28002465 -156286197 + AluSg1 SINE Alu 3 276 -33 752 121 13 32 chr4 28002468 28002625 -156286037 + (GGAA)n Simple_repeat Simple_repeat 3 156 0 229 352 11 23 chr4 28002645 28002733 -156285929 + MER5B DNA MER1_type 17 103 -75 1361 179 17 96 chr4 28002733 28003099 -156285563 + MLT1A2 LTR MaLR 1 431 -36 367 184 112 0 chr4 28003302 28003400 -156285262 + MLT1B LTR MaLR 27 135 -255 805 215 0 29 chr4 28003716 28003888 -156284774 - MLT1A1 LTR MaLR -198 167 1 2393 151 39 10 chr4 28004158 28004574 -156284088 + MSTA LTR MaLR 1 428 0 21 0 0 0 chr4 28004827 28004848 -156283814 + AT_rich Low_complexity Low_complexity 1 21 0 398 355 79 18 chr4 28004921 28005149 -156283513 + MIR SINE MIR 20 261 -1 1171 196 96 29 chr4 28005366 28005678 -156282984 - MLT1A1 LTR MaLR -31 334 2 835 295 87 38 chr4 28006517 28007046 -156281616 - MLT1H1 LTR MaLR 0 555 1 21 0 0 0 chr4 28007164 28007185 -156281477 + AT_rich Low_complexity Low_complexity 1 21 0 258 32 0 0 chr4 28008228 28008259 -156280403 + (T)n Simple_repeat Simple_repeat 1 31 0 332 266 138 9 chr4 28008449 28008558 -156280104 + MLT1K LTR MaLR 395 517 -71 230 233 0 0 chr4 28008568 28008611 -156280051 + (CA)n Simple_repeat Simple_repeat 2 44 0 201 39 0 0 chr4 28008612 28008638 -156280024 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 468 254 52 94 chr4 28009064 28009351 -156279311 - MLT1I LTR MaLR -21 388 114 601 223 40 34 chr4 28009598 28009746 -156278916 - LTR48B LTR ERV1 0 644 496 301 278 35 0 chr4 28009757 28009872 -156278790 - LTR49-int LTR ERV1 -2300 3963 3845 404 238 26 90 chr4 28009948 28010137 -156278525 - LTR49-int LTR ERV1 -2686 3577 3401 418 250 88 63 chr4 28010158 28010442 -156278220 - LTR49-int LTR ERV1 -2960 1976 1686 21 57 0 0 chr4 28010530 28010565 -156278097 + AT_rich Low_complexity Low_complexity 1 35 0 4997 156 21 25 chr4 28010567 28010932 -156277730 - L1PB3 LINE L1 -7 6147 5782 243 0 0 0 chr4 28010932 28010959 -156277703 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2133 88 22 0 chr4 28010959 28011233 -156277429 - AluSc SINE Alu -29 280 1 4997 156 21 25 chr4 28011233 28012096 -156276566 - L1PB3 LINE L1 -370 5784 4918 407 215 128 27 chr4 28012116 28012265 -156276397 - LTR57-int LTR ERVL -3919 1424 1261 * 602 226 0 98 chr4 28012220 28012455 -156276207 - LTR49-int LTR ERV1 -3202 3129 869 897 234 88 119 chr4 28012456 28013021 -156275641 - LTR49-int LTR ERV1 -4228 2103 1556 256 288 15 0 chr4 28013959 28014025 -156274637 - tRNA-Glu-GAG tRNA tRNA -2 73 7 296 288 61 58 chr4 28014043 28014370 -156274292 - LTR49-int LTR ERV1 -5138 1193 866 6925 232 116 43 chr4 28014377 28015710 -156272952 - L1MDa LINE L1 -2852 3688 2454 243 88 0 0 chr4 28015710 28015744 -156272918 + (TG)n Simple_repeat Simple_repeat 1 34 0 6925 232 116 43 chr4 28015744 28017832 -156270830 - L1MDa LINE L1 -4086 2454 18 452 331 11 27 chr4 28018231 28018415 -156270247 - MIR SINE MIR -70 192 12 223 267 0 0 chr4 28018837 28018882 -156269780 - L2 LINE L2 -18 3254 3210 2342 72 0 3 chr4 28019088 28019420 -156269242 - AluY SINE Alu 0 331 1 1598 121 0 0 chr4 28019425 28019673 -156268989 - L1MA2 LINE L1 0 6304 6057 4594 128 24 28 chr4 28020260 28020872 -156267790 - L1MA2 LINE L1 -232 6072 5471 2383 100 0 0 chr4 28020872 28021173 -156267489 + AluSc SINE Alu 2 302 -7 4594 128 24 28 chr4 28021173 28021772 -156266890 - L1MA2 LINE L1 -833 5471 4871 1263 246 3 0 chr4 28021772 28022085 -156266577 - L1 LINE L1 -3458 4107 3794 * 4545 182 42 0 chr4 28022083 28022896 -156265766 - L1 LINE L1 -5932 1633 787 241 349 46 9 chr4 28023115 28023224 -156265438 - L2 LINE L2 -3 3310 3198 288 293 66 34 chr4 28023347 28023513 -156265149 - L2 LINE L2 -189 3083 2911 288 339 58 5 chr4 28024339 28024563 -156264099 - L2 LINE L2 -1 3312 3077 595 336 138 15 chr4 28024577 28024643 -156264019 - L2 LINE L2 -164 3149 3093 587 281 151 52 chr4 28024643 28024854 -156263808 - MLT1H1 LTR MaLR 0 555 366 192 40 0 0 chr4 28024854 28024879 -156263783 + (TC)n Simple_repeat Simple_repeat 2 26 0 587 281 151 52 chr4 28024879 28025172 -156263490 - MLT1H1 LTR MaLR -189 366 1 595 336 138 15 chr4 28025172 28025636 -156263026 - L2 LINE L2 -220 3093 2555 279 337 0 6 chr4 28025639 28025843 -156262819 + (TA)n Simple_repeat Simple_repeat 1 202 0 1032 201 112 5 chr4 28025884 28026098 -156262564 + MER8 DNA MER2_type 3 239 0 192 289 165 16 chr4 28026196 28026317 -156262345 - L2 LINE L2 -782 2532 2394 545 333 29 24 chr4 28026501 28026747 -156261915 + MIR SINE MIR 6 252 -10 1756 186 3 22 chr4 28027688 28028006 -156260656 - AluJb SINE Alu 0 312 1 16301 166 71 11 chr4 28028357 28035510 -156253152 + L1PA14 LINE L1 5 7597 -2 572 317 95 18 chr4 28035804 28036088 -156252574 + L2 LINE L2 3008 3313 0 192 306 0 20 chr4 28036227 28036276 -156252386 + MIR SINE MIR 19 66 -196 195 313 37 75 chr4 28036414 28036548 -156252114 - MER5A DNA MER1_type -6 183 55 931 353 46 15 chr4 28036918 28037437 -156251225 - L2 LINE L2 -944 2370 1836 196 268 56 0 chr4 28037467 28037538 -156251124 + MIR SINE MIR 118 192 -70 264 382 49 0 chr4 28038106 28038250 -156250412 - MIR SINE MIR -76 186 36 21 36 0 0 chr4 28038424 28038452 -156250210 + AT_rich Low_complexity Low_complexity 1 28 0 1427 221 13 45 chr4 28038662 28039037 -156249625 - MLT1A1 LTR MaLR -2 363 1 821 213 128 27 chr4 28039314 28039572 -156249090 + L1MA10 LINE L1 6050 6333 -1 767 123 0 0 chr4 28040091 28040205 -156248457 + L1PA7 LINE L1 1 114 -6347 * 3652 99 11 0 chr4 28040204 28040748 -156247914 + L1PA7 LINE L1 4259 4808 -1653 6768 72 2 1 chr4 28040749 28042461 -156246201 + L1PA7 LINE L1 4744 6458 -11 2652 84 5 10 chr4 28043055 28043448 -156245214 - THE1B-int LTR MaLR -1188 392 2 1920 140 23 26 chr4 28043449 28043791 -156244871 - THE1B LTR MaLR 0 364 24 20809 25 0 1 chr4 28043893 28046720 -156241942 + L1P1 LINE L1 2789 5614 -541 22474 42 44 3 chr4 28046820 28049792 -156238870 - L1P LINE L1 -3052 3094 1 2856 161 18 4 chr4 28049791 28050281 -156238381 - L1PA15-16 LINE L1 -5297 1552 1056 * 3346 180 22 8 chr4 28050283 28050951 -156237711 - L1MC3 LINE L1 -989 6796 6119 399 295 91 50 chr4 28051496 28051879 -156236783 - L1MC5 LINE L1 -276 7685 7287 454 238 34 27 chr4 28052013 28052222 -156236440 - L1MC4 LINE L1 -737 7224 7049 378 327 112 48 chr4 28052640 28053139 -156235523 - L1MC4a LINE L1 -1180 6628 6098 390 262 215 3 chr4 28053204 28053502 -156235160 - L1MC4a LINE L1 -1778 6030 5670 269 144 0 99 chr4 28053597 28053708 -156234954 + (TTA)n Simple_repeat Simple_repeat 1 100 0 21 36 0 0 chr4 28054363 28054391 -156234271 + AT_rich Low_complexity Low_complexity 1 28 0 1297 111 0 0 chr4 28054742 28054913 -156233749 - AluSg/x SINE Alu -7 305 135 4082 223 26 42 chr4 28056650 28057680 -156230982 + L1PA12 LINE L1 862 1907 -5677 1715 125 19 106 chr4 28057680 28058001 -156230661 + AluSx SINE Alu 1 293 -19 4082 223 26 42 chr4 28058001 28058301 -156230361 + L1PA12 LINE L1 1907 2210 -5374 2154 127 3 3 chr4 28058301 28058609 -156230053 + AluSx SINE Alu 1 308 -4 4082 223 26 42 chr4 28058609 28059183 -156229479 + L1PA12 LINE L1 2210 3541 -4043 * 6856 230 26 7 chr4 28059174 28060712 -156227950 + L1P LINE L1 3762 5329 -817 403 159 0 0 chr4 28060712 28060781 -156227881 + AluS SINE Alu 1 69 -242 349 91 15 0 chr4 28061410 28061476 -156227186 - L1P LINE L1 -845 5329 5263 420 55 0 0 chr4 28061793 28061848 -156226814 + (CA)n Simple_repeat Simple_repeat 2 56 0 334 192 0 0 chr4 28065707 28065780 -156222882 + L1MB8 LINE L1 6094 6166 -12 207 0 0 0 chr4 28066525 28066548 -156222114 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2218 118 0 0 chr4 28067242 28067538 -156221124 - AluSg SINE Alu -10 300 5 312 70 0 0 chr4 28067687 28067730 -156220932 + (CA)n Simple_repeat Simple_repeat 2 44 0 213 231 0 0 chr4 28068463 28068515 -156220147 + (CATA)n Simple_repeat Simple_repeat 3 54 0 1097 259 85 5 chr4 28068540 28068964 -156219698 + L1M4c LINE L1 1275 1732 -4652 379 263 45 64 chr4 28068970 28069289 -156219373 + L1M4c LINE L1 1923 2203 -4181 26 30 0 0 chr4 28069318 28069351 -156219311 + AT_rich Low_complexity Low_complexity 1 33 0 1155 72 0 0 chr4 28069509 28069662 -156219000 - L1PA6 LINE L1 -6 6148 5996 21 36 0 0 chr4 28069851 28069879 -156218783 + AT_rich Low_complexity Low_complexity 1 28 0 2231 102 0 10 chr4 28070604 28070898 -156217764 - AluSg SINE Alu -19 291 1 1800 293 64 7 chr4 28071221 28071828 -156216834 - L2 LINE L2 -357 2957 2316 1695 230 39 23 chr4 28071864 28072303 -156216359 + MLT1C LTR MaLR 6 451 -16 189 0 0 0 chr4 28074057 28074078 -156214584 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 261 0 0 0 chr4 28074077 28074106 -156214556 + (GA)n Simple_repeat Simple_repeat 2 30 0 251 221 0 13 chr4 28074130 28074207 -156214455 + (TATG)n Simple_repeat Simple_repeat 1 76 0 255 61 0 0 chr4 28074212 28074245 -156214417 + (CA)n Simple_repeat Simple_repeat 2 34 0 213 246 0 35 chr4 28074255 28074312 -156214350 + L2 LINE L2 3259 3313 0 413 250 128 20 chr4 28074472 28074620 -156214042 + MIR SINE MIR 75 238 -24 24 0 0 0 chr4 28074990 28075014 -156213648 + AT_rich Low_complexity Low_complexity 1 24 0 1091 77 0 0 chr4 28076400 28076530 -156212132 - AluSq/x SINE Alu -181 132 3 4539 159 21 4 chr4 28076532 28077357 -156211305 - L1MA4 LINE L1 -237 6063 5229 747 213 22 6 chr4 28077562 28077745 -156210917 - L1MC3 LINE L1 -7 7778 7593 2943 12 0 12 chr4 28077847 28078170 -156210492 + L1HS LINE L1 5815 6135 -20 203 0 37 0 chr4 28078170 28078197 -156210465 + (TAA)n Simple_repeat Simple_repeat 3 30 0 2943 12 0 12 chr4 28078197 28078217 -156210445 + L1HS LINE L1 6135 6154 -1 209 0 97 0 chr4 28078611 28078642 -156210020 + A-rich Low_complexity Low_complexity 3 36 0 12751 207 32 8 chr4 28078643 28081260 -156207402 + L1PA16 LINE L1 1535 4088 -2781 273 29 0 0 chr4 28081260 28081294 -156207368 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 12751 207 32 8 chr4 28081294 28083875 -156204787 + L1PA16 LINE L1 4088 6860 -9 27 0 0 0 chr4 28083875 28083902 -156204760 + AT_rich Low_complexity Low_complexity 1 27 0 335 242 0 116 chr4 28083909 28083972 -156204690 + L1MC3 LINE L1 6793 6862 -923 246 81 0 0 chr4 28083972 28084009 -156204653 + (CA)n Simple_repeat Simple_repeat 1 37 0 335 242 0 116 chr4 28084009 28084143 -156204519 + L1MC3 LINE L1 6862 6967 -818 * 1035 160 17 0 chr4 28084137 28084312 -156204350 + L1P4 LINE L1 5523 5700 -466 471 191 82 0 chr4 28084331 28084441 -156204221 + L1MC3 LINE L1 6980 7098 -687 294 231 15 0 chr4 28084442 28084507 -156204155 + MLT1F1 LTR MaLR 37 102 -465 1598 163 41 0 chr4 28084538 28084833 -156203829 + L1MC3 LINE L1 7230 7536 -249 308 298 24 0 chr4 28084833 28084917 -156203745 + L1MC4 LINE L1 6618 6703 -1339 271 330 132 48 chr4 28086092 28086319 -156202343 - L2 LINE L2 -2 3270 3025 206 328 86 11 chr4 28086729 28086915 -156201747 - L2 LINE L2 -924 2390 2191 1536 175 60 35 chr4 28086957 28087323 -156201339 + THE1C LTR MaLR 1 375 0 228 314 15 66 chr4 28087395 28087532 -156201130 - MER5B DNA MER1_type -20 158 29 335 221 29 29 chr4 28088074 28088178 -156200484 + L1ME4a LINE L1 5808 5911 -210 299 255 61 51 chr4 28088612 28088710 -156199952 + L2 LINE L2 3184 3282 -31 4758 213 15 18 chr4 28090547 28090810 -156197852 - L1 LINE L1 -1610 4536 4274 1542 169 26 55 chr4 28090810 28090971 -156197691 - MER44D DNA MER2_type -1883 608 444 2205 134 0 0 chr4 28090971 28091278 -156197384 + AluSx SINE Alu 1 307 -5 1542 169 26 55 chr4 28091278 28091464 -156197198 - MER44D DNA MER2_type -2047 444 1 4758 213 15 18 chr4 28091464 28092304 -156196358 - L1 LINE L1 -1872 4274 3436 2607 218 17 30 chr4 28092301 28092998 -156195664 + L1 LINE L1 4552 5239 -907 * 1863 195 19 3 chr4 28093103 28093462 -156195200 - L1MC3 LINE L1 -226 7977 7613 393 209 11 11 chr4 28093465 28093556 -156195106 - MLT1F1 LTR MaLR -442 125 35 417 218 89 0 chr4 28093556 28093680 -156194982 - L1MC3 LINE L1 -692 7511 7377 272 167 0 0 chr4 28093680 28093728 -156194934 - MLT2D LTR ERVL 0 414 367 180 0 0 0 chr4 28093753 28093773 -156194889 + (TG)n Simple_repeat Simple_repeat 2 21 0 1603 190 6 35 chr4 28093773 28094089 -156194573 - MLT2D LTR ERVL -40 374 68 614 186 46 131 chr4 28094089 28094326 -156194336 - L1MC3 LINE L1 -847 7356 7140 1349 75 0 0 chr4 28094330 28094504 -156194158 + AluY SINE Alu 137 310 -1 6909 234 55 65 chr4 28094504 28095294 -156193368 - L1MC3 LINE L1 -743 5821 5025 1706 182 39 0 chr4 28095294 28095407 -156193255 + AluJb SINE Alu 7 114 -198 180 0 0 0 chr4 28095407 28095427 -156193235 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1706 182 39 0 chr4 28095427 28095593 -156193069 + AluJb SINE Alu 114 297 -15 6909 234 55 65 chr4 28095593 28096365 -156192297 - L1MC3 LINE L1 -1539 5025 4247 2165 100 29 16 chr4 28096365 28096674 -156191988 - AluSq SINE Alu 0 313 1 6909 234 55 65 chr4 28096674 28097415 -156191247 - L1MC3 LINE L1 -2317 4247 3500 637 195 35 40 chr4 28097415 28097632 -156191030 - AluJb SINE Alu 0 339 124 6909 234 55 65 chr4 28097632 28099933 -156188729 - L1MC3 LINE L1 -3064 3500 2414 479 241 9 0 chr4 28099942 28100054 -156188608 + LTR48B LTR ERV1 530 642 -2 992 222 121 70 chr4 28100091 28100447 -156188215 - MLT1A2 LTR MaLR 0 374 1 1909 243 55 48 chr4 28100447 28101758 -156186904 - L1MC3 LINE L1 -4238 2327 570 1073 262 96 19 chr4 28101856 28102169 -156186493 - L1MC3 LINE L1 -5484 561 225 660 199 21 14 chr4 28102171 28102312 -156186350 + MLT1A1 LTR MaLR 1 142 -223 2382 214 27 32 chr4 28102317 28103020 -156185642 - LTR27 LTR ERV1 -2 634 3 11038 140 14 24 chr4 28103020 28105088 -156183574 - LTR27-int LTR ERV1 -1 6995 4908 2126 89 28 17 chr4 28105088 28105379 -156183283 + AluY SINE Alu 3 296 -15 11038 140 14 24 chr4 28105379 28105440 -156183222 - LTR27-int LTR ERV1 -2088 4908 2231 1214 193 41 0 chr4 28105440 28105658 -156183004 + MLT1A1 LTR MaLR 139 365 0 338 296 39 69 chr4 28105659 28105912 -156182750 - L1MC3 LINE L1 -5819 296 1 1576 211 3 0 chr4 28105928 28106212 -156182450 - AluJb SINE Alu -27 285 1 624 158 10 0 chr4 28106358 28106459 -156182203 - LTR29 LTR ERV1 0 622 521 2948 175 50 2 chr4 28106559 28107159 -156181503 + L1MB1 LINE L1 5536 6164 -4 214 265 0 0 chr4 28107429 28107478 -156181184 - MIR3 SINE MIR -26 182 134 361 295 58 33 chr4 28107646 28107851 -156180811 + MIR SINE MIR 4 212 -50 2425 122 3 0 chr4 28108888 28109256 -156179406 - L1PB1 LINE L1 -1 6150 5782 509 163 0 30 chr4 28109256 28109391 -156179271 + (TA)n Simple_repeat Simple_repeat 2 132 0 3634 85 23 8 chr4 28109395 28109926 -156178736 - L1PB1 LINE L1 -359 5792 5254 690 312 17 13 chr4 28109984 28110215 -156178447 + MIR SINE MIR 14 245 -17 186 222 0 0 chr4 28110186 28110222 -156178440 + L2 LINE L2 3262 3297 -16 * 333 204 169 28 chr4 28110277 28110419 -156178243 - MER103 DNA DNA -2 164 3 291 54 0 0 chr4 28111111 28111148 -156177514 + (TA)n Simple_repeat Simple_repeat 1 37 0 311 364 38 23 chr4 28111972 28112104 -156176558 + L2 LINE L2 3139 3272 0 202 317 0 0 chr4 28112428 28112488 -156176174 + L2 LINE L2 3242 3301 -12 42405 36 22 1 chr4 28112489 28118517 -156170145 - L1PA3 LINE L1 0 6155 1 536 151 12 0 chr4 28118611 28118697 -156169965 + MER20 DNA MER1_type 1 87 -132 3244 223 39 18 chr4 28119269 28120121 -156168541 - L1MA9 LINE L1 -30 6282 5413 231 371 14 14 chr4 28121301 28121441 -156167221 + L2 LINE L2 2602 2741 -573 659 207 20 7 chr4 28121618 28121768 -156166894 + MER96B DNA MER1_type? 1 152 -265 21 0 0 0 chr4 28121770 28121791 -156166871 + AT_rich Low_complexity Low_complexity 1 21 0 995 223 170 33 chr4 28122092 28122421 -156166241 + MLT1E1 LTR MaLR 1 284 -370 261 0 0 0 chr4 28122421 28122450 -156166212 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 995 223 170 33 chr4 28122450 28122639 -156166023 + MLT1E1 LTR MaLR 284 654 0 246 355 78 44 chr4 28122641 28122962 -156165700 + L2 LINE L2 2610 2941 -373 21 36 0 0 chr4 28123273 28123301 -156165361 + AT_rich Low_complexity Low_complexity 1 28 0 1482 154 35 4 chr4 28123626 28123886 -156164776 - Tigger3(Golem) DNA MER2_type -2760 269 2 414 0 0 0 chr4 28123890 28123936 -156164726 + (CA)n Simple_repeat Simple_repeat 2 47 0 1102 256 86 8 chr4 28123936 28124318 -156164344 - MLT2B1 LTR ERVL -100 420 9 643 298 97 70 chr4 28124833 28125447 -156163215 + HAL1b LINE L1 71 584 -833 574 281 130 18 chr4 28125451 28125782 -156162880 + HAL1b LINE L1 635 1002 -415 28 79 0 0 chr4 28126299 28126362 -156162300 + AT_rich Low_complexity Low_complexity 1 63 0 277 305 75 10 chr4 28126606 28126914 -156161748 - L1ME4a LINE L1 -178 5943 5616 597 243 24 44 chr4 28127217 28127423 -156161239 + Charlie2 DNA MER1_type 105 306 -2476 2605 230 65 8 chr4 28127439 28128385 -156160277 + Charlie2 DNA MER1_type 1857 2855 -7 2568 55 0 3 chr4 28128695 28129007 -156159655 - AluY SINE Alu 0 311 1 188 346 64 0 chr4 28129929 28130007 -156158655 - L2 LINE L2 -46 3226 3144 1943 163 0 0 chr4 28130270 28130559 -156158103 + AluSx SINE Alu 1 289 -23 1011 213 92 0 chr4 28130708 28130915 -156157747 + AluJb SINE Alu 72 297 -15 1106 311 53 40 chr4 28131037 28131620 -156157042 + L2 LINE L2 1997 2587 -727 1382 181 56 98 chr4 28131654 28132064 -156156598 + MSTD LTR MaLR 4 396 0 2428 215 13 65 chr4 28132064 28132752 -156155910 + MSTD-int LTR MaLR 2 653 -1082 1281 209 73 12 chr4 28132752 28133082 -156155580 - MER4D LTR ERV1 0 903 554 1182 201 67 4 chr4 28133112 28133380 -156155282 - MER49 LTR ERV1 -638 285 1 3165 233 121 45 chr4 28133380 28134385 -156154277 + MSTD-int LTR MaLR 650 1731 -4 373 220 10 20 chr4 28134390 28134490 -156154172 + MSTD LTR MaLR 2 100 -296 * 889 169 17 34 chr4 28134489 28134592 -156154070 + MSTD LTR MaLR 210 310 -86 2363 169 26 9 chr4 28134592 28135011 -156153651 + MSTB LTR MaLR 1 426 0 889 169 17 34 chr4 28135011 28135084 -156153578 + MSTD LTR MaLR 310 383 -13 582 341 84 39 chr4 28135097 28135753 -156152909 + L2 LINE L2 2633 3313 0 293 326 11 0 chr4 28136193 28136282 -156152380 + MIR SINE MIR 54 143 -65 485 300 131 75 chr4 28137147 28137627 -156151035 - L2 LINE L2 0 3313 2807 2823 123 37 0 chr4 28137689 28138120 -156150542 - MLT2A2 LTR ERVL 0 453 7 303 317 10 10 chr4 28138293 28138397 -156150265 - L1MEc LINE L1 -6231 165 62 2333 60 0 0 chr4 28138820 28139147 -156149515 - AluY SINE Alu 0 327 1 1705 194 64 6 chr4 28139663 28140008 -156148654 - MLT1A1 LTR MaLR 0 365 1 764 264 117 18 chr4 28140085 28140637 -156148025 + L1ME4a LINE L1 5326 5928 -193 356 256 15 68 chr4 28140647 28140780 -156147882 + L1MDa LINE L1 2437 2562 -3978 1703 217 32 78 chr4 28140995 28141608 -156147054 + MER63C DNA MER1_type 11 661 -400 739 173 0 8 chr4 28141608 28141735 -156146927 - FLAM_C SINE Alu -7 126 1 1703 217 32 78 chr4 28141735 28141995 -156146667 + MER63C DNA MER1_type 661 931 0 333 261 59 14 chr4 28142121 28142198 -156146464 - L1MEc LINE L1 -919 1868 1796 1608 253 56 16 chr4 28142198 28142684 -156145978 + MLT1D LTR MaLR 1 505 0 333 261 59 14 chr4 28142684 28142823 -156145839 - L1MEc LINE L1 -991 1796 1723 24 96 0 0 chr4 28142886 28142959 -156145703 + AT_rich Low_complexity Low_complexity 1 73 0 373 263 89 38 chr4 28142975 28143188 -156145474 - L1MEc LINE L1 -5021 1405 1182 230 322 7 0 chr4 28143197 28143346 -156145316 - L1MEc LINE L1 -5085 1344 1195 290 254 24 79 chr4 28143856 28143982 -156144680 - L1MEc LINE L1 -5948 468 350 37 93 0 0 chr4 28144669 28144776 -156143886 + AT_rich Low_complexity Low_complexity 1 107 0 244 261 42 59 chr4 28145201 28145320 -156143342 - L3b LINE CR1 -351 1232 1116 892 276 13 63 chr4 28146389 28146769 -156141893 - MLT1K LTR MaLR -18 570 210 401 339 49 22 chr4 28147220 28147403 -156141259 - MIR SINE MIR -40 222 35 383 359 61 9 chr4 28147645 28147876 -156140786 + MIR SINE MIR 9 251 -11 1437 203 32 41 chr4 28147886 28148201 -156140461 - AluJo SINE Alu 0 312 1 222 196 0 36 chr4 28148206 28148262 -156140400 + (TTA)n Simple_repeat Simple_repeat 1 54 0 198 290 89 61 chr4 28148439 28148592 -156140070 + MIR SINE MIR 6 161 -70 2539 138 29 12 chr4 28148817 28149236 -156139426 + MSTB LTR MaLR 1 426 0 1625 175 40 55 chr4 28149825 28150226 -156138436 - MLT2C1 LTR ERVL -2 395 1 217 0 61 0 chr4 28150352 28150385 -156138277 + (TTTTTA)n Simple_repeat Simple_repeat 2 36 0 390 241 35 0 chr4 28150503 28150590 -156138072 + MER58 DNA MER1_type 10 99 -242 232 200 0 0 chr4 28150612 28150662 -156138000 + L1MB4 LINE L1 6113 6162 -18 405 155 29 29 chr4 28150686 28150789 -156137873 + MER58 DNA MER1_type 2318 2420 0 1990 156 0 6 chr4 28150898 28151212 -156137450 - AluJb SINE Alu 0 312 1 1021 279 63 34 chr4 28151337 28151468 -156137194 + L2 LINE L2 2760 2886 -427 1967 132 0 0 chr4 28151468 28151748 -156136914 - AluSx SINE Alu -2 310 31 1021 279 63 34 chr4 28151748 28152133 -156136529 + L2 LINE L2 2886 3303 -10 316 266 0 57 chr4 28152239 28152363 -156136299 - L2 LINE L2 0 3313 3197 2233 115 0 0 chr4 28152481 28152776 -156135886 - AluSg1 SINE Alu -14 295 1 2090 62 0 141 chr4 28153148 28153502 -156135160 - AluY SINE Alu -7 304 1 1259 177 35 0 chr4 28153558 28153784 -156134878 + Charlie3 DNA MER1_type 1 234 -2476 1142 73 20 0 chr4 28154607 28154758 -156133904 - AluY SINE Alu -9 302 149 3591 52 0 2 chr4 28154760 28155207 -156133455 + LTR7 LTR ERV1 3 448 -2 16349 88 29 21 chr4 28155209 28158288 -156130374 + HERVH LTR ERV1 1 2995 -4718 938 113 7 0 chr4 28158267 28158417 -156130245 + HERVH LTR ERV1 3140 3290 -4423 * 3254 111 0 6 chr4 28158407 28158912 -156129750 + HERVH LTR ERV1 3492 3993 -3720 1477 113 18 4 chr4 28158914 28159143 -156129519 + HERVH LTR ERV1 4488 4719 -2994 1156 59 0 30 chr4 28159135 28159304 -156129358 + HERVH LTR ERV1 7550 7713 0 * 3601 51 0 2 chr4 28159304 28159753 -156128909 + LTR7 LTR ERV1 1 448 -2 1285 65 0 0 chr4 28159755 28159908 -156128754 - AluY SINE Alu -158 153 1 278 324 14 0 chr4 28159959 28160030 -156128632 - L2 LINE L2 -63 3209 3138 28 0 0 0 chr4 28160063 28160091 -156128571 + AT_rich Low_complexity Low_complexity 1 28 0 264 244 198 0 chr4 28160357 28160443 -156128219 - MIR SINE MIR 0 262 160 2394 100 0 0 chr4 28160888 28161199 -156127463 + AluY SINE Alu 1 311 0 416 289 74 20 chr4 28161330 28161479 -156127183 + MIR3 SINE MIR 38 194 -14 308 229 0 0 chr4 28161576 28161659 -156127003 + L1MA10 LINE L1 6241 6323 -11 1078 175 52 10 chr4 28161935 28162129 -156126533 - AluJo SINE Alu -26 286 85 222 239 0 28 chr4 28162490 28162561 -156126101 + A-rich Low_complexity Low_complexity 3 71 0 2149 86 4 4 chr4 28162606 28162912 -156125750 - AluSg SINE Alu 0 306 1 183 100 0 0 chr4 28163208 28163238 -156125424 + (A)n Simple_repeat Simple_repeat 1 30 0 269 234 48 97 chr4 28164021 28164086 -156124576 + MIR SINE MIR 68 126 -136 2511 62 0 3 chr4 28164086 28164393 -156124269 - AluY SINE Alu -4 307 2 269 234 48 97 chr4 28164393 28164451 -156124211 + MIR SINE MIR 126 185 -77 265 240 0 0 chr4 28166288 28166338 -156122324 + MIR3 SINE MIR 111 160 -48 184 263 0 0 chr4 28166557 28166595 -156122067 - MIR SINE MIR -115 147 110 189 100 60 0 chr4 28167317 28167367 -156121295 + (TA)n Simple_repeat Simple_repeat 2 54 0 251 54 27 0 chr4 28168052 28168089 -156120573 + (TTTTTG)n Simple_repeat Simple_repeat 4 41 0 2767 23 0 0 chr4 28168131 28168441 -156120221 + AluYb8 SINE Alu 1 310 -8 2740 57 6 0 chr4 28168929 28169278 -156119384 + L1PA7 LINE L1 5802 6152 -2 2264 117 0 10 chr4 28169507 28169816 -156118846 - AluSx SINE Alu -6 306 1 273 260 14 0 chr4 28169939 28170012 -156118650 + MER112 DNA MER1_type 1 74 -186 2335 293 70 34 chr4 28170159 28171189 -156117473 - HERV16 LTR ERVL -2056 2940 1851 2000 147 46 12 chr4 28171189 28171515 -156117147 - MER1B DNA MER1_type 0 337 1 2335 293 70 34 chr4 28171515 28171714 -156116948 - HERV16 LTR ERVL -3145 1851 1661 1317 331 33 7 chr4 28171747 28172287 -156116375 - HERV16 LTR ERVL -3462 1534 981 371 242 0 42 chr4 28172704 28172799 -156115863 + L2 LINE L2 3221 3311 -2 217 225 0 0 chr4 28172817 28172857 -156115805 + (TATG)n Simple_repeat Simple_repeat 3 42 0 23 68 0 0 chr4 28172872 28172916 -156115746 + AT_rich Low_complexity Low_complexity 1 44 0 422 238 14 77 chr4 28173087 28173230 -156115432 - AluJo SINE Alu -178 134 1 348 362 44 33 chr4 28173456 28173891 -156114771 - L1 LINE L1 -2340 3806 3374 189 0 0 0 chr4 28174214 28174235 -156114427 + (TTA)n Simple_repeat Simple_repeat 1 21 0 269 274 221 0 chr4 28175783 28175896 -156112766 + MIR3 SINE MIR 58 195 -13 310 337 40 19 chr4 28176989 28177164 -156111498 + MIR SINE MIR 13 186 -57 682 264 88 0 chr4 28177253 28177446 -156111216 - MIR SINE MIR -31 231 22 2488 128 8 11 chr4 28177694 28178070 -156110592 + THE1C LTR MaLR 1 375 0 9422 105 35 47 chr4 28178070 28179664 -156108998 + THE1C-int LTR MaLR 1 1574 -6 2226 128 35 14 chr4 28179670 28180037 -156108625 + THE1C LTR MaLR 1 375 0 979 182 125 34 chr4 28180869 28181166 -156107496 + MER33 DNA MER1_type 1 324 0 678 316 85 44 chr4 28181592 28182212 -156106450 - L2 LINE L2 -20 3293 2584 1027 178 14 29 chr4 28182316 28182524 -156106138 - AluJo SINE Alu -23 289 85 636 321 47 65 chr4 28182756 28183204 -156105458 - L1ME4a LINE L1 -261 5860 5421 235 209 105 0 chr4 28183219 28183305 -156105357 - L1P LINE L1 -724 5427 5333 226 294 109 40 chr4 28183989 28184174 -156104488 + MIR3 SINE MIR 3 206 -56 278 341 29 34 chr4 28184334 28184539 -156104123 - Charlie8 DNA MER1_type -2212 205 2 199 403 71 44 chr4 28186042 28186337 -156102325 - L2 LINE L2 -2 3270 2968 316 292 55 22 chr4 28186619 28186830 -156101832 + MLT1K LTR MaLR 74 278 -337 353 341 104 6 chr4 28187828 28187992 -156100670 + MIR SINE MIR 52 231 -31 581 319 108 0 chr4 28188558 28188790 -156099872 + MIR SINE MIR 4 260 -2 27 81 0 0 chr4 28188897 28188959 -156099703 + AT_rich Low_complexity Low_complexity 1 62 0 1628 199 23 0 chr4 28189010 28189311 -156099351 + AluJo SINE Alu 5 312 0 383 236 9 38 chr4 28189430 28189536 -156099126 - AluJo SINE Alu -117 185 83 216 0 0 0 chr4 28189630 28189654 -156099008 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 488 236 55 112 chr4 28189807 28190154 -156098508 - MLT1I LTR MaLR -2 407 81 567 307 90 8 chr4 28190201 28190445 -156098217 + L2 LINE L2 3050 3313 0 277 319 78 7 chr4 28190604 28190745 -156097917 - MIR SINE MIR -56 206 56 216 274 78 20 chr4 28191153 28191255 -156097407 + MIR SINE MIR 127 234 -28 251 244 12 12 chr4 28191644 28191730 -156096932 + LTR67 LTR ERVL 472 557 0 540 125 47 0 chr4 28191797 28191925 -156096737 + (TAGA)n Simple_repeat Simple_repeat 3 136 0 613 278 59 5 chr4 28191925 28192112 -156096550 - MIR SINE MIR 0 262 66 193 385 13 0 chr4 28192605 28192683 -156095979 - MIR SINE MIR -179 83 5 392 298 70 0 chr4 28194605 28194719 -156093943 + MIR SINE MIR 24 145 -63 2011 38 0 61 chr4 28197358 28197647 -156091015 - AluY SINE Alu 0 309 37 770 114 0 0 chr4 28197647 28197761 -156090901 + AluSg/x SINE Alu 189 302 -8 205 253 53 32 chr4 28197985 28198080 -156090582 + MIR SINE MIR 77 173 -89 1501 220 3 10 chr4 28198227 28198532 -156090130 + AluJo SINE Alu 1 303 -9 392 329 133 7 chr4 28198634 28198777 -156089885 + MIR3 SINE MIR 36 196 -12 283 345 164 36 chr4 28198800 28199656 -156089006 + L2 LINE L2 2027 2988 -284 484 333 91 9 chr4 28199681 28199900 -156088762 + MIR SINE MIR 14 250 -12 209 324 67 9 chr4 28199977 28200082 -156088580 + L2 LINE L2 3150 3260 -12 180 305 84 46 chr4 28200200 28200331 -156088331 + L2 LINE L2 3137 3272 0 417 341 93 22 chr4 28202020 28202246 -156086416 - MIR SINE MIR 0 262 21 273 293 27 0 chr4 28202839 28202914 -156085748 - L2 LINE L2 -15 3257 3181 1371 166 8 4 chr4 28202933 28203168 -156085494 - MER46A DNA MER2_type 0 236 1 534 209 38 0 chr4 28203791 28203896 -156084766 + MIR SINE MIR 49 157 -105 311 208 0 10 chr4 28204346 28204442 -156084220 + GA-rich Low_complexity Low_complexity 2 96 0 198 258 268 10 chr4 28206224 28206321 -156082341 - L2 LINE L2 -15 3257 3136 273 333 86 43 chr4 28206518 28206704 -156081958 + MIR SINE MIR 57 250 -12 27 49 0 0 chr4 28206710 28206751 -156081911 + AT_rich Low_complexity Low_complexity 1 41 0 230 0 33 0 chr4 28207989 28208019 -156080643 + (TGGA)n Simple_repeat Simple_repeat 3 33 0 2393 90 3 0 chr4 28208109 28208420 -156080242 + AluSp SINE Alu 1 312 -1 398 248 46 46 chr4 28208832 28208985 -156079677 + L2 LINE L2 3161 3313 0 285 208 62 42 chr4 28210281 28210377 -156078285 - MLT1L LTR MaLR -10 605 508 2313 100 0 16 chr4 28210972 28211282 -156077380 + AluSx SINE Alu 1 305 -7 2404 77 0 6 chr4 28212288 28212599 -156076063 + AluY SINE Alu 1 309 -2 22 0 0 0 chr4 28213131 28213153 -156075509 + AT_rich Low_complexity Low_complexity 1 22 0 347 230 32 79 chr4 28213220 28213346 -156075316 - MIR SINE MIR -20 242 123 1942 169 37 33 chr4 28213404 28213949 -156074713 - MLT2A2 LTR ERVL -2 552 1 11525 96 8 6 chr4 28213949 28215908 -156072754 - ERVL-A2 LTR ERVL -7 5757 3742 3708 97 19 2 chr4 28215911 28216437 -156072225 + THE1B-int LTR MaLR 1046 1580 0 2396 133 8 0 chr4 28216437 28216798 -156071864 + THE1B LTR MaLR 1 364 0 252 59 0 0 chr4 28216818 28216852 -156071810 + (TCCA)n Simple_repeat Simple_repeat 1 34 0 370 275 25 0 chr4 28216894 28216974 -156071688 - L2 LINE L2 -50 3222 3141 506 355 53 48 chr4 28217106 28217562 -156071100 - L2 LINE L2 -357 2957 2500 189 0 0 0 chr4 28217996 28218017 -156070645 + (T)n Simple_repeat Simple_repeat 1 21 0 225 283 151 9 chr4 28218656 28218762 -156069900 + L2 LINE L2 2590 2710 -604 485 410 102 17 chr4 28218810 28219212 -156069450 + L2 LINE L2 2827 3262 -10 259 336 44 35 chr4 28219302 28219415 -156069247 - L2 LINE L2 0 3272 3159 366 325 20 60 chr4 28219872 28220124 -156068538 - L2 LINE L2 -554 2760 2519 202 255 0 0 chr4 28220377 28220428 -156068234 + L2 LINE L2 3263 3313 0 471 314 138 53 chr4 28220690 28221508 -156067154 - L2 LINE L2 -1082 2232 1345 328 284 23 0 chr4 28221901 28221989 -156066673 - L1MC4 LINE L1 -1337 6705 6616 324 237 0 41 chr4 28221902 28221999 -156066663 + L1MC4 LINE L1 6613 6705 -1337 * 3086 234 47 34 chr4 28222234 28223144 -156065518 + L1ME1 LINE L1 5239 6159 -7 1994 157 0 0 chr4 28224049 28224354 -156064308 - AluSx SINE Alu -7 305 1 204 232 18 18 chr4 28224807 28224863 -156063799 + GA-rich Low_complexity Low_complexity 3 58 0 473 338 29 24 chr4 28225555 28225765 -156062897 - LTR33 LTR ERVL -310 211 1 398 340 103 47 chr4 28225993 28226440 -156062222 - ERVL LTR ERVL -400 5364 4893 1710 190 90 45 chr4 28226562 28227005 -156061657 - MLT1C LTR MaLR -4 463 1 180 0 0 0 chr4 28228431 28228451 -156060211 + (TG)n Simple_repeat Simple_repeat 2 21 0 * 219 36 0 0 chr4 28228450 28228478 -156060184 + (TA)n Simple_repeat Simple_repeat 1 28 0 1881 188 11 0 chr4 28229797 28230148 -156058514 - L1MB7 LINE L1 -20 6164 5810 415 326 14 0 chr4 28232080 28232221 -156056441 - MIR SINE MIR -4 258 116 1638 206 10 0 chr4 28232506 28232797 -156055865 + AluJo SINE Alu 1 294 -18 286 333 31 0 chr4 28232971 28233067 -156055595 - MIR SINE MIR -77 185 87 216 333 74 48 chr4 28233306 28233495 -156055167 - L2 LINE L2 -112 3160 2967 337 276 50 49 chr4 28234459 28234660 -156054002 + MIR SINE MIR 31 229 -33 236 319 0 0 chr4 28235345 28235417 -156053245 + L1ME LINE L1 5567 5638 -532 836 282 95 38 chr4 28235616 28235963 -156052699 + L2 LINE L2 2494 2860 -454 660 342 17 0 chr4 28236079 28236313 -156052349 + MIR SINE MIR 19 256 -6 407 374 21 11 chr4 28236387 28236574 -156052088 - L2 LINE L2 -238 3075 2887 269 233 158 17 chr4 28236631 28236751 -156051911 - MIR SINE MIR -16 246 110 * 626 304 239 28 chr4 28236698 28237264 -156051398 - L2 LINE L2 -380 2934 2250 298 301 83 0 chr4 28238110 28238243 -156050419 + MER103 DNA DNA 21 164 -2 544 267 133 0 chr4 28239160 28239340 -156049322 - MIR SINE MIR -12 250 47 366 308 46 8 chr4 28239504 28239634 -156049028 - L2 LINE L2 -1 3271 3137 30 0 0 0 chr4 28240698 28240728 -156047934 + AT_rich Low_complexity Low_complexity 1 30 0 2043 113 0 0 chr4 28240729 28240995 -156047667 - AluSc SINE Alu -43 266 1 22 0 0 0 chr4 28243188 28243210 -156045452 + AT_rich Low_complexity Low_complexity 1 22 0 1215 114 6 0 chr4 28243225 28243401 -156045261 - L1PA8A LINE L1 -7 6124 5948 199 0 65 0 chr4 28243606 28243637 -156045025 + (TTG)n Simple_repeat Simple_repeat 1 33 0 653 294 37 29 chr4 28245372 28245617 -156043045 - MIR SINE MIR -4 258 12 482 306 78 23 chr4 28245768 28245987 -156042675 + MIR SINE MIR 7 237 -25 203 351 26 0 chr4 28246885 28246962 -156041700 - MIR SINE MIR -16 246 168 216 309 53 32 chr4 28246996 28247090 -156041572 - MIR SINE MIR -94 114 19 205 288 96 0 chr4 28247461 28247534 -156041128 - MIR SINE MIR -3 259 180 427 208 233 0 chr4 28247895 28248015 -156040647 - AluJo SINE Alu -152 160 13 1710 174 49 30 chr4 28248016 28248384 -156040278 - THE1C LTR MaLR 0 375 1 833 338 68 21 chr4 28249079 28249398 -156039264 + L2 LINE L2 2776 3129 -184 2212 119 0 0 chr4 28249398 28249700 -156038962 - AluSg SINE Alu -8 302 1 833 338 68 21 chr4 28249700 28249895 -156038767 + L2 LINE L2 3129 3313 0 2181 147 28 6 chr4 28250778 28251132 -156037530 - THE1B LTR MaLR 0 364 3 1826 182 22 14 chr4 28251320 28251682 -156036980 + MLT1A1 LTR MaLR 1 365 0 233 343 155 17 chr4 28252101 28252282 -156036380 - MIR SINE MIR -37 225 20 327 225 0 0 chr4 28252646 28252717 -156035945 - L1ME LINE L1 -312 5809 5739 21 0 0 0 chr4 28252853 28252874 -156035788 + AT_rich Low_complexity Low_complexity 1 21 0 312 328 8 32 chr4 28252893 28253018 -156035644 + L2 LINE L2 3162 3283 -30 186 71 0 0 chr4 28253606 28253634 -156035028 + (A)n Simple_repeat Simple_repeat 1 28 0 2102 67 35 58 chr4 28253678 28253990 -156034672 - AluY SINE Alu -6 305 1 620 315 80 5 chr4 28253993 28254206 -156034456 - MIR SINE MIR -14 248 20 474 330 34 29 chr4 28254326 28254535 -156034127 - MIR SINE MIR -36 226 17 293 269 32 0 chr4 28254544 28254637 -156034025 + CT-rich Low_complexity Low_complexity 3 98 0 439 127 25 42 chr4 28254732 28254843 -156033819 + CT-rich Low_complexity Low_complexity 4 114 -5 1747 147 0 39 chr4 28254843 28255122 -156033540 - AluJb SINE Alu -44 268 1 201 174 22 0 chr4 28255274 28255320 -156033342 + (AAATG)n Simple_repeat Simple_repeat 3 49 0 269 348 169 0 chr4 28255978 28256096 -156032566 - L2 LINE L2 -1 3271 3134 27 49 0 0 chr4 28256551 28256592 -156032070 + AT_rich Low_complexity Low_complexity 1 41 0 448 254 60 43 chr4 28256595 28256827 -156031835 + L1M4 LINE L1 3754 3989 -2157 644 327 59 32 chr4 28256844 28257251 -156031411 - LTR16A LTR ERVL -20 430 13 275 279 0 0 chr4 28257368 28257454 -156031208 + L1M4 LINE L1 4151 4236 -1910 697 288 97 64 chr4 28257835 28258305 -156030357 + HAL1b LINE L1 328 836 -512 1831 158 0 4 chr4 28258305 28258583 -156030079 + AluJo SINE Alu 15 291 -21 697 288 97 64 chr4 28258583 28258883 -156029779 + HAL1b LINE L1 836 1124 -224 30 109 0 0 chr4 28259038 28259166 -156029496 + AT_rich Low_complexity Low_complexity 1 128 0 287 336 28 5 chr4 28259252 28259463 -156029199 + L1M4 LINE L1 4397 4612 -1534 223 167 45 0 chr4 28259520 28259586 -156029076 + (TA)n Simple_repeat Simple_repeat 1 69 0 183 100 0 0 chr4 28259864 28259894 -156028768 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 330 277 148 19 chr4 28260155 28260310 -156028352 + MER69A DNA AcHobo 3 177 0 502 229 54 42 chr4 28260437 28260603 -156028059 - MIR SINE MIR -3 259 92 240 218 56 106 chr4 28260858 28261000 -156027662 + HAL1b LINE L1 1199 1333 -15 300 292 95 54 chr4 28262151 28262319 -156026343 + MIR SINE MIR 2 176 -86 509 306 8 0 chr4 28262418 28262552 -156026110 - MIR SINE MIR -106 156 22 28 48 0 0 chr4 28262553 28262595 -156026067 + AT_rich Low_complexity Low_complexity 1 42 0 226 214 0 0 chr4 28262863 28262905 -156025757 + (TG)n Simple_repeat Simple_repeat 1 42 0 1900 217 76 24 chr4 28263569 28263988 -156024674 + MLT2B1 LTR ERVL 1 441 -79 1202 185 141 0 chr4 28264011 28264309 -156024353 + MER2 DNA MER2_type 2 341 -3 3176 242 35 98 chr4 28264320 28264415 -156024247 + MLT1A1-int LTR MaLR 5 104 -1631 2463 115 11 13 chr4 28264415 28264789 -156023873 - THE1C LTR MaLR 0 375 3 9414 134 30 58 chr4 28264791 28266417 -156022245 - THE1C-int LTR MaLR -1 1579 1 2599 111 11 0 chr4 28266417 28266788 -156021874 - THE1C LTR MaLR 0 375 1 3176 242 35 98 chr4 28266788 28268160 -156020502 + MLT1A1-int LTR MaLR 103 1735 0 1128 241 88 29 chr4 28268160 28268250 -156020412 + MLT1A1 LTR MaLR 4 87 -278 2136 142 37 3 chr4 28268250 28268602 -156020060 - THE1B LTR MaLR 0 364 1 1128 241 88 29 chr4 28268602 28268852 -156019810 + MLT1A1 LTR MaLR 87 364 -1 1194 320 61 7 chr4 28269018 28269477 -156019185 - MLT1J LTR MaLR -27 484 1 379 252 164 42 chr4 28269818 28270056 -156018606 + MLT1L LTR MaLR 22 288 -327 23 0 0 0 chr4 28271538 28271561 -156017101 + AT_rich Low_complexity Low_complexity 1 23 0 293 250 75 12 chr4 28271962 28272042 -156016620 - L2 LINE L2 -40 3232 3148 195 42 0 0 chr4 28272066 28272090 -156016572 + (CAA)n Simple_repeat Simple_repeat 1 24 0 344 237 53 18 chr4 28272412 28272526 -156016136 - MLT1J1 LTR MaLR -1 445 328 363 78 0 0 chr4 28272841 28272892 -156015770 + (TGGA)n Simple_repeat Simple_repeat 3 53 0 274 235 34 109 chr4 28274094 28274213 -156014449 - MIR SINE MIR -64 198 89 377 356 44 0 chr4 28274402 28274562 -156014100 - MIR SINE MIR -18 244 78 413 244 42 25 chr4 28275331 28275450 -156013212 + MIR SINE MIR 91 211 -51 454 346 139 13 chr4 28276268 28276641 -156012021 + L2 LINE L2 2557 2976 -338 221 245 0 0 chr4 28276765 28276814 -156011848 + (TTCA)n Simple_repeat Simple_repeat 3 51 0 208 314 116 41 chr4 28276821 28276942 -156011720 + L2 LINE L2 3137 3266 -6 * 279 302 146 14 chr4 28276937 28277149 -156011513 - MIR SINE MIR 0 262 23 283 287 149 33 chr4 28278854 28279035 -156009627 - MIR SINE MIR -6 256 55 192 163 0 0 chr4 28280135 28280178 -156008484 + (CA)n Simple_repeat Simple_repeat 2 44 0 1325 96 0 0 chr4 28281177 28281343 -156007319 - AluSx SINE Alu -121 191 26 307 319 43 17 chr4 28283034 28283150 -156005512 + L2 LINE L2 3187 3305 -8 207 327 187 19 chr4 28283158 28283265 -156005397 + L2 LINE L2 3139 3263 -9 2258 81 6 50 chr4 28283635 28283958 -156004704 - AluSc SINE Alu 0 309 1 7609 24 2 1 chr4 28286212 28287667 -156000995 + L1PA3 LINE L1 4709 6155 0 2099 111 10 7 chr4 28288464 28288752 -155999910 - AluSx SINE Alu -23 289 1 450 131 30 0 chr4 28289048 28289147 -155999515 + (TAGA)n Simple_repeat Simple_repeat 1 102 0 22 0 0 0 chr4 28289192 28289214 -155999448 + AT_rich Low_complexity Low_complexity 1 22 0 349 317 37 6 chr4 28289464 28289628 -155999034 + MIR SINE MIR 92 260 -2 243 0 0 0 chr4 28297383 28297410 -155991252 + (GA)n Simple_repeat Simple_repeat 2 28 0 234 0 0 0 chr4 28297572 28297598 -155991064 + (TTGG)n Simple_repeat Simple_repeat 1 26 0 243 0 0 0 chr4 28297621 28297648 -155991014 + (TA)n Simple_repeat Simple_repeat 2 28 0 302 115 19 0 chr4 28297802 28297854 -155990808 + (CA)n Simple_repeat Simple_repeat 1 53 0 294 69 52 0 chr4 28297966 28298024 -155990638 + (TTG)n Simple_repeat Simple_repeat 3 63 0 181 351 0 0 chr4 28298527 28298601 -155990061 - MIR SINE MIR -90 118 45 2518 87 122 5 chr4 28300166 28300567 -155988095 + LTR7 LTR ERV1 1 448 -2 330 213 13 13 chr4 28300650 28300725 -155987937 + L2 LINE L2 3235 3309 -4 487 271 192 9 chr4 28301646 28301860 -155986802 - MIR SINE MIR -4 258 6 25 31 0 0 chr4 28302557 28302589 -155986073 + AT_rich Low_complexity Low_complexity 1 32 0 316 275 134 33 chr4 28302706 28302913 -155985749 + L1ME4a LINE L1 5692 5877 -244 186 71 0 0 chr4 28302913 28302941 -155985721 + (TA)n Simple_repeat Simple_repeat 1 28 0 316 275 134 33 chr4 28302941 28303122 -155985540 + L1ME4a LINE L1 5877 6119 -2 582 226 15 22 chr4 28303133 28303270 -155985392 + MIR SINE MIR 114 249 -13 24 0 0 0 chr4 28303282 28303306 -155985356 + AT_rich Low_complexity Low_complexity 1 24 0 225 211 22 39 chr4 28303509 28303689 -155984973 + (CA)n Simple_repeat Simple_repeat 2 178 0 2384 95 0 0 chr4 28304716 28305021 -155983641 + AluSg1 SINE Alu 1 305 -4 446 335 38 32 chr4 28305447 28305632 -155983030 - MER5A DNA MER1_type -1 188 3 281 328 70 30 chr4 28305924 28306125 -155982537 + L3b LINE CR1 1216 1424 -159 185 381 0 0 chr4 28306235 28306298 -155982364 + L2 LINE L2 3244 3306 -7 1082 338 56 47 chr4 28306411 28307402 -155981260 + L2 LINE L2 2262 3260 -12 195 264 126 11 chr4 28309205 28309292 -155979370 - MIR SINE MIR -10 252 156 1258 147 62 23 chr4 28309881 28310055 -155978607 - L1MA10 LINE L1 -1 6333 6140 285 29 0 0 chr4 28310055 28310089 -155978573 + (TG)n Simple_repeat Simple_repeat 1 34 0 1258 147 62 23 chr4 28310089 28310221 -155978441 - L1MA10 LINE L1 -194 6140 6015 2251 63 0 0 chr4 28310321 28310589 -155978073 + AluY SINE Alu 33 300 -11 715 216 149 3 chr4 28311852 28312134 -155976528 - MER33 DNA MER1_type -1 323 1 184 262 204 0 chr4 28312271 28312374 -155976288 + L2 LINE L2 3126 3249 -64 394 318 0 0 chr4 28313767 28313893 -155974769 + MER117 DNA MER1_type 29 154 -43 2150 101 0 76 chr4 28314210 28314538 -155974124 - AluSx SINE Alu -9 303 1 25 31 0 0 chr4 28315906 28315938 -155972724 + AT_rich Low_complexity Low_complexity 1 32 0 216 214 0 0 chr4 28316908 28316950 -155971712 + A-rich Low_complexity Low_complexity 1 42 0 231 368 0 0 chr4 28319676 28319733 -155968929 - L2 LINE L2 -7 3265 3209 234 0 0 0 chr4 28321135 28321161 -155967501 + (T)n Simple_repeat Simple_repeat 1 26 0 334 314 57 6 chr4 28321971 28322130 -155966532 + L3b LINE CR1 1307 1473 -110 593 242 38 0 chr4 28323288 28323445 -155965217 - MER117 DNA MER1_type -29 168 6 497 288 91 26 chr4 28323940 28324158 -155964504 - MIR SINE MIR -3 259 30 339 176 40 0 chr4 28324257 28324331 -155964331 - MER116 DNA Mariner -2 78 2 22 35 0 0 chr4 28325589 28325618 -155963044 + AT_rich Low_complexity Low_complexity 1 29 0 201 352 0 9 chr4 28325931 28326036 -155962626 + (TA)n Simple_repeat Simple_repeat 1 104 0 189 121 0 0 chr4 28326514 28326547 -155962115 + (CA)n Simple_repeat Simple_repeat 2 34 0 201 262 16 0 chr4 28327595 28327656 -155961006 + (TATATG)n Simple_repeat Simple_repeat 5 66 0 343 315 102 0 chr4 28327726 28327853 -155960809 - MIR3 SINE MIR -7 201 62 200 200 0 0 chr4 28328691 28328726 -155959936 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 399 197 0 25 chr4 28330101 28330223 -155958439 + GA-rich Low_complexity Low_complexity 2 120 0 28 71 0 0 chr4 28331951 28332007 -155956655 + AT_rich Low_complexity Low_complexity 1 56 0 338 231 161 35 chr4 28333220 28333475 -155955187 + L1ME4a LINE L1 5582 5868 -253 221 375 23 16 chr4 28334379 28334507 -155954155 - L3 LINE CR1 -3 1574 1446 246 295 142 35 chr4 28334533 28334794 -155953868 + L2 LINE L2 2190 2478 -836 2535 67 0 3 chr4 28334891 28335203 -155953459 - AluY SINE Alu 0 311 1 375 319 83 7 chr4 28335301 28335445 -155953217 - L2 LINE L2 -2 3270 3116 1491 159 21 110 chr4 28336177 28336311 -155952351 + AluYb8 SINE Alu 2 146 -172 2288 86 0 3 chr4 28336311 28336601 -155952061 + AluY SINE Alu 1 289 -22 1491 159 21 110 chr4 28336601 28336793 -155951869 + AluYb8 SINE Alu 146 299 -19 387 0 0 0 chr4 28337759 28337802 -155950860 + (TG)n Simple_repeat Simple_repeat 2 44 0 195 151 151 19 chr4 28339613 28339666 -155948996 + MIR SINE MIR 81 140 -122 337 336 8 49 chr4 28341809 28341931 -155946731 + MIR3 SINE MIR 1 117 -91 2028 133 24 46 chr4 28341973 28342342 -155946320 - THE1B LTR MaLR -2 362 2 856 277 78 18 chr4 28342345 28342518 -155946144 + L2 LINE L2 2626 2787 -526 316 313 39 0 chr4 28342518 28342646 -155946016 + MER94 DNA DNA 2 134 0 856 277 78 18 chr4 28342646 28342940 -155945722 + L2 LINE L2 2787 3140 -173 334 392 104 15 chr4 28343362 28343622 -155945040 + L3 LINE CR1 156 438 -1139 22 70 0 0 chr4 28343754 28343797 -155944865 + AT_rich Low_complexity Low_complexity 1 43 0 24 32 0 0 chr4 28344156 28344187 -155944475 + AT_rich Low_complexity Low_complexity 1 31 0 445 196 23 113 chr4 28344818 28344874 -155943788 + MER5A DNA MER1_type 61 120 -69 1198 159 43 0 chr4 28344874 28345082 -155943580 - MER20 DNA MER1_type -2 217 1 445 196 23 113 chr4 28345082 28345158 -155943504 + MER5A DNA MER1_type 120 181 -8 584 290 202 0 chr4 28345638 28345831 -155942831 + MIR SINE MIR 6 237 -25 375 103 46 47 chr4 28346125 28346460 -155942202 + (TTATA)n Simple_repeat Simple_repeat 1 334 0 188 364 0 0 chr4 28347847 28347924 -155940738 - MIR3 SINE MIR -44 164 88 522 236 32 57 chr4 28348223 28348380 -155940282 - L2 LINE L2 -9 3304 3152 384 237 83 47 chr4 28348570 28348739 -155939923 + MER5B DNA MER1_type 2 176 -2 23 33 0 0 chr4 28349460 28349490 -155939172 + AT_rich Low_complexity Low_complexity 1 30 0 183 247 137 27 chr4 28349578 28349651 -155939011 + MIR SINE MIR 61 141 -67 278 348 43 7 chr4 28350369 28350463 -155938199 + MIR SINE MIR 50 152 -110 2316 51 0 4 chr4 28350463 28350738 -155937924 + AluY SINE Alu 19 292 -19 278 348 43 7 chr4 28350738 28350781 -155937881 + MIR SINE MIR 152 192 -70 249 278 42 14 chr4 28351412 28351484 -155937178 - L2 LINE L2 -43 3270 3197 217 254 0 0 chr4 28351552 28351607 -155937055 + A-rich Low_complexity Low_complexity 2 56 0 577 88 0 0 chr4 28351720 28351800 -155936862 + MADE1 DNA Mariner 1 80 0 456 334 46 23 chr4 28352236 28352449 -155936213 - MIR SINE MIR -15 247 32 459 286 161 6 chr4 28353450 28353611 -155935051 - MER5A DNA MER1_type 0 189 4 997 228 50 17 chr4 28355416 28355657 -155933005 + MIR SINE MIR 13 261 -1 276 383 83 0 chr4 28356283 28356403 -155932259 + L2 LINE L2 3141 3270 -2 2011 144 39 33 chr4 28356505 28356867 -155931795 + THE1B LTR MaLR 1 364 0 181 273 0 0 chr4 28356982 28357026 -155931636 + L2 LINE L2 3268 3311 -2 282 371 39 49 chr4 28357164 28357471 -155931191 - L2 LINE L2 -3 3269 2966 442 302 36 7 chr4 28358214 28358353 -155930309 - L2 LINE L2 -2 3311 3169 225 297 0 0 chr4 28360348 28360412 -155928250 - MIR SINE MIR -29 233 170 479 214 86 26 chr4 28360413 28360530 -155928132 + L2 LINE L2 3190 3313 0 322 241 256 15 chr4 28360527 28360664 -155927998 - MIR SINE MIR -86 176 7 * 184 318 16 16 chr4 28360709 28360772 -155927890 + MIR SINE MIR 86 148 -114 344 250 29 6 chr4 28361031 28361203 -155927459 + (TA)n Simple_repeat Simple_repeat 2 177 0 2145 92 0 17 chr4 28361664 28362009 -155926653 + AluY SINE Alu 8 311 0 1599 209 3 14 chr4 28362126 28362423 -155926239 + AluJo SINE Alu 5 298 -14 1217 172 79 7 chr4 28362424 28362714 -155925948 + L1MA9 LINE L1 5962 6272 -40 180 302 48 0 chr4 28363077 28363140 -155925522 - L2 LINE L2 -2092 1222 1157 210 167 0 0 chr4 28363722 28363758 -155924904 - L2 LINE L2 -17 3296 3261 377 253 82 48 chr4 28364607 28364753 -155923909 + MIR SINE MIR 42 192 -70 227 319 69 58 chr4 28365121 28365397 -155923265 + L2 LINE L2 2371 2649 -665 322 164 82 27 chr4 28365512 28365585 -155923077 + MIR3 SINE MIR 90 166 -42 284 289 124 8 chr4 28365677 28365798 -155922864 + L2 LINE L2 3136 3270 -2 1789 173 0 0 chr4 28365878 28366179 -155922483 - AluSx SINE Alu -11 301 1 2007 139 7 3 chr4 28367244 28367539 -155921123 + AluSx SINE Alu 1 296 -16 183 275 0 0 chr4 28367862 28367902 -155920760 + L2 LINE L2 3218 3257 -15 199 282 64 82 chr4 28367966 28368076 -155920586 + L2 LINE L2 3203 3310 -3 204 40 0 0 chr4 28368295 28368320 -155920342 + (CA)n Simple_repeat Simple_repeat 2 26 0 229 348 12 81 chr4 28369579 28369740 -155918922 + L2 LINE L2 3116 3265 -7 236 337 56 0 chr4 28374988 28375077 -155913585 + L2 LINE L2 3116 3209 -63 2417 66 3 25 chr4 28375256 28375573 -155913089 + AluY SINE Alu 1 310 -1 2331 71 0 61 chr4 28379577 28379903 -155908759 + AluY SINE Alu 1 306 -5 200 159 0 23 chr4 28382375 28382419 -155906243 + (CATA)n Simple_repeat Simple_repeat 4 46 0 228 263 0 0 chr4 28382446 28382503 -155906159 + (TA)n Simple_repeat Simple_repeat 2 58 0 294 309 0 36 chr4 28382725 28382835 -155905827 - L2 LINE L2 0 3313 3208 900 189 4 103 chr4 28384730 28384973 -155903689 - MER20 DNA MER1_type 0 219 1 523 298 26 26 chr4 28385810 28386001 -155902661 + MIR SINE MIR 18 208 -54 204 250 0 0 chr4 28386024 28386072 -155902590 + (TTA)n Simple_repeat Simple_repeat 2 49 0 189 256 0 0 chr4 28386080 28386119 -155902543 - L2 LINE L2 -8 3305 3267 180 204 0 45 chr4 28386225 28386269 -155902393 + L2 LINE L2 3266 3307 -6 24 0 0 0 chr4 28386611 28386635 -155902027 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr4 28386880 28386912 -155901750 + AT_rich Low_complexity Low_complexity 1 32 0 222 205 0 0 chr4 28387984 28388023 -155900639 + (TG)n Simple_repeat Simple_repeat 2 40 0 221 246 0 0 chr4 28389190 28389255 -155899407 + A-rich Low_complexity Low_complexity 1 65 0 237 178 0 0 chr4 28392551 28392596 -155896066 + A-rich Low_complexity Low_complexity 1 45 0 21 57 0 0 chr4 28395790 28395825 -155892837 + AT_rich Low_complexity Low_complexity 1 35 0 184 331 47 47 chr4 28396209 28396336 -155892326 - MIR SINE MIR -30 232 106 24 0 0 0 chr4 28396874 28396898 -155891764 + AT_rich Low_complexity Low_complexity 1 24 0 207 100 0 0 chr4 28397634 28397664 -155890998 + (T)n Simple_repeat Simple_repeat 1 30 0 767 264 95 49 chr4 28398002 28398258 -155890404 + L1ME4a LINE L1 5525 5768 -353 351 0 0 0 chr4 28398258 28398297 -155890365 + (TG)n Simple_repeat Simple_repeat 2 40 0 767 264 95 49 chr4 28398297 28398611 -155890051 + L1ME4a LINE L1 5768 6121 0 401 365 6 0 chr4 28399678 28399837 -155888825 + MIR3 SINE MIR 39 198 -10 2228 97 0 32 chr4 28401147 28401455 -155887207 - AluSg SINE Alu -12 298 1 819 264 27 46 chr4 28401888 28402256 -155886406 + L1ME3A LINE L1 5810 6170 0 253 298 24 12 chr4 28402431 28402515 -155886147 + MIR3 SINE MIR 83 167 -41 462 304 130 24 chr4 28402642 28402849 -155885813 + MIR SINE MIR 19 247 -15 2200 113 0 46 chr4 28403250 28403393 -155885269 + AluSx SINE Alu 1 149 -163 2525 56 0 10 chr4 28403393 28403696 -155884966 + AluY SINE Alu 1 300 -11 2200 113 0 46 chr4 28403696 28403879 -155884783 + AluSx SINE Alu 149 312 0 598 245 94 10 chr4 28404255 28404551 -155884111 + MER33 DNA MER1_type 1 361 -2 263 281 73 0 chr4 28404664 28404746 -155883916 + MER91C DNA MER1_type 32 119 -21 696 350 12 4 chr4 28407901 28408158 -155880504 - MIR SINE MIR 0 262 4 2004 134 23 0 chr4 28408636 28408935 -155879727 + AluSx SINE Alu 1 306 -6 286 319 72 14 chr4 28409816 28409954 -155878708 + MIR SINE MIR 47 192 -70 22 0 0 0 chr4 28410549 28410571 -155878091 + AT_rich Low_complexity Low_complexity 1 22 0 226 320 270 0 chr4 28411951 28412129 -155876533 + MIR SINE MIR 34 259 -3 589 97 67 0 chr4 28412402 28412567 -155876095 + (TA)n Simple_repeat Simple_repeat 2 177 0 22 0 0 0 chr4 28412583 28412605 -155876057 + AT_rich Low_complexity Low_complexity 1 22 0 395 67 97 0 chr4 28412608 28412735 -155875927 + (TA)n Simple_repeat Simple_repeat 2 144 -4 2026 120 7 0 chr4 28412735 28413018 -155875644 - AluSg SINE Alu -25 285 1 395 67 97 0 chr4 28413018 28413024 -155875638 + (TA)n Simple_repeat Simple_repeat 144 148 0 628 292 129 2 chr4 28413028 28413232 -155875430 - MIR SINE MIR -27 235 11 794 138 7 0 chr4 28414054 28414192 -155874470 - L1MB1 LINE L1 0 6168 6030 343 287 65 67 chr4 28414505 28414670 -155873992 + MIR SINE MIR 19 184 -63 1686 211 57 0 chr4 28414699 28415069 -155873593 + MLT2C2 LTR ERVL 3 393 -71 2364 60 0 54 chr4 28415069 28415385 -155873277 - AluY SINE Alu -12 299 1 319 21 42 0 chr4 28415505 28415553 -155873109 + (TA)n Simple_repeat Simple_repeat 1 50 0 294 29 0 0 chr4 28415552 28415587 -155873075 + (GA)n Simple_repeat Simple_repeat 2 36 0 * 245 65 0 0 chr4 28415590 28415621 -155873041 + MLT2C2 LTR ERVL 367 397 0 185 243 71 0 chr4 28415625 28415695 -155872967 - MIR SINE MIR -8 254 180 282 333 128 0 chr4 28415890 28415992 -155872670 + L2 LINE L2 3158 3272 0 204 377 54 72 chr4 28416127 28416350 -155872312 - L2 LINE L2 0 3272 3054 264 290 14 0 chr4 28416351 28416420 -155872242 - L2 LINE L2 0 3272 3203 22 0 0 0 chr4 28416426 28416448 -155872214 + AT_rich Low_complexity Low_complexity 1 22 0 260 189 27 40 chr4 28416459 28416533 -155872129 - MIR SINE MIR -14 248 176 25 51 0 0 chr4 28417411 28417450 -155871212 + AT_rich Low_complexity Low_complexity 1 39 0 521 275 64 39 chr4 28417691 28417924 -155870738 + L2 LINE L2 3046 3284 -29 857 231 49 39 chr4 28418196 28418399 -155870263 + MIR SINE MIR 2 206 -56 228 253 84 24 chr4 28418478 28418561 -155870101 + MIR SINE MIR 127 214 -48 548 242 38 97 chr4 28418604 28418997 -155869665 - L1ME4a LINE L1 -25 6096 5727 312 335 32 6 chr4 28419313 28419471 -155869191 - MER117 DNA MER1_type -29 168 7 189 107 0 0 chr4 28419633 28419661 -155869001 + (T)n Simple_repeat Simple_repeat 1 28 0 1749 65 5 0 chr4 28419674 28419891 -155868771 - AluY SINE Alu -93 218 1 270 297 0 0 chr4 28420384 28420448 -155868214 - L2 LINE L2 -1 3271 3208 1873 161 13 10 chr4 28420484 28420788 -155867874 - AluSx SINE Alu -7 305 1 212 242 81 61 chr4 28421395 28421494 -155867168 + L2 LINE L2 3195 3295 -18 263 322 6 12 chr4 28421594 28421735 -155866927 + MIR3 SINE MIR 62 202 -6 240 35 0 0 chr4 28424227 28424256 -155864406 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 206 81 0 54 chr4 28425373 28425410 -155863252 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 181 282 107 114 chr4 28425675 28425806 -155862856 - L2 LINE L2 0 3272 3143 206 214 0 0 chr4 28425817 28425859 -155862803 + GA-rich Low_complexity Low_complexity 3 44 0 2174 95 14 3 chr4 28426614 28426897 -155861765 + AluSc SINE Alu 1 286 -23 300 290 174 63 chr4 28428283 28428697 -155859965 + L2 LINE L2 2032 2491 -823 469 278 36 92 chr4 28428899 28429205 -155859457 + L2 LINE L2 2932 3220 -52 1989 131 60 20 chr4 28429253 28429605 -155859057 - MER47A DNA MER2_type 0 366 1 336 338 76 43 chr4 28429831 28430041 -155858621 - MIR SINE MIR 0 262 46 214 304 43 0 chr4 28430569 28430638 -155858024 + L2 LINE L2 3238 3309 -4 5062 88 4 41 chr4 28430639 28431420 -155857242 + L1PA10 LINE L1 5417 6168 0 21 36 0 0 chr4 28431420 28431448 -155857214 + AT_rich Low_complexity Low_complexity 1 28 0 346 222 111 40 chr4 28432084 28432210 -155856452 - MIR SINE MIR 0 262 128 442 273 103 30 chr4 28433898 28434063 -155854599 + MIR SINE MIR 71 247 -15 593 254 94 33 chr4 28434082 28434295 -155854367 + MIR SINE MIR 10 235 -27 286 301 122 16 chr4 28434620 28434743 -155853919 - MIR SINE MIR -107 155 20 21 0 0 0 chr4 28434868 28434889 -155853773 + AT_rich Low_complexity Low_complexity 1 21 0 340 265 0 68 chr4 28436987 28437104 -155851558 - MIR SINE MIR -93 169 61 273 300 57 0 chr4 28437782 28437852 -155850810 - MER91C DNA MER1_type -33 107 34 537 239 42 80 chr4 28437899 28438112 -155850550 - MIR SINE MIR -56 206 2 669 265 132 9 chr4 28438435 28438654 -155850008 - MIR SINE MIR -1 261 16 910 119 0 0 chr4 28438728 28438854 -155849808 + AluSp SINE Alu 7 132 -181 2023 119 14 0 chr4 28438857 28439150 -155849512 + AluSx SINE Alu 1 297 -15 413 18 54 0 chr4 28439761 28439817 -155848845 + (TAAAA)n Simple_repeat Simple_repeat 2 60 0 193 359 109 39 chr4 28440650 28440778 -155847884 - L2 LINE L2 0 3272 3136 202 188 0 0 chr4 28441383 28441415 -155847247 + polypurine Low_complexity Low_complexity 5 36 0 376 342 80 47 chr4 28442425 28442700 -155845962 - L2 LINE L2 -4 3268 2985 28 0 0 26 chr4 28443310 28443331 -155845331 + AT_rich Low_complexity Low_complexity 1 22 -16 1421 206 10 34 chr4 28443331 28443623 -155845039 - AluJo SINE Alu -25 287 3 28 0 0 26 chr4 28443623 28443640 -155845022 + AT_rich Low_complexity Low_complexity 22 38 0 279 271 25 8 chr4 28445681 28445799 -155842863 + L1MC/D LINE L1 5675 5794 -2014 276 329 0 0 chr4 28445812 28445888 -155842774 + MLT1F1 LTR MaLR 36 111 -456 3063 174 20 2 chr4 28445889 28446487 -155842175 + L1MC3 LINE L1 7177 7785 0 2563 105 5 29 chr4 28446772 28447154 -155841508 + THE1C LTR MaLR 1 373 -2 628 248 127 0 chr4 28447164 28447321 -155841341 + MIR SINE MIR 60 236 -26 225 108 0 0 chr4 28447324 28447361 -155841301 + (TCTCTG)n Simple_repeat Simple_repeat 5 41 0 21 0 0 0 chr4 28447445 28447466 -155841196 + AT_rich Low_complexity Low_complexity 1 21 0 23 78 0 0 chr4 28447496 28447547 -155841115 + AT_rich Low_complexity Low_complexity 1 51 0 291 54 0 0 chr4 28449024 28449061 -155839601 + (CA)n Simple_repeat Simple_repeat 2 38 0 789 305 4 61 chr4 28449435 28449565 -155839097 - MIR SINE MIR -2 260 151 405 0 0 0 chr4 28449565 28449610 -155839052 + (TA)n Simple_repeat Simple_repeat 2 46 0 789 305 4 61 chr4 28449610 28449741 -155838921 - MIR SINE MIR -111 151 14 363 286 143 0 chr4 28450358 28450477 -155838185 - L2 LINE L2 0 3272 3137 304 243 142 47 chr4 28450585 28450733 -155837929 - MIR SINE MIR -12 250 89 418 277 23 0 chr4 28450852 28450982 -155837680 - MER94 DNA DNA 0 134 2 340 292 215 42 chr4 28453246 28453530 -155835132 - L2 LINE L2 -5 3267 2935 243 323 48 38 chr4 28454469 28454655 -155834007 + LTR33 LTR ERVL 37 224 -297 551 206 33 46 chr4 28454792 28454967 -155833695 - MER69 DNA AcHobo 0 2526 8 180 0 0 0 chr4 28455290 28455310 -155833352 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr4 28456927 28456949 -155831713 + AT_rich Low_complexity Low_complexity 1 22 0 438 315 89 38 chr4 28457852 28458087 -155830575 - MIR SINE MIR 0 262 16 1293 229 76 0 chr4 28458088 28458403 -155830259 - MER58B DNA MER1_type -2 339 1 594 243 155 7 chr4 28458414 28458562 -155830100 - MER5A DNA MER1_type -3 186 17 489 279 104 22 chr4 28459084 28459267 -155829395 - MIR SINE MIR -62 200 3 310 336 167 15 chr4 28459301 28459625 -155829037 + L2 LINE L2 2895 3267 -5 187 261 22 0 chr4 28459672 28459718 -155828944 + MIR3 SINE MIR 108 154 -54 422 302 31 8 chr4 28459761 28459890 -155828772 - L2 LINE L2 0 3313 3182 899 161 9 85 chr4 28462408 28462619 -155826043 + MER20 DNA MER1_type 24 218 -1 291 296 45 0 chr4 28464513 28464601 -155824061 - MIR3 SINE MIR -34 174 83 585 228 139 19 chr4 28466346 28466504 -155822158 - MIR SINE MIR -66 196 20 461 302 131 37 chr4 28466593 28467050 -155821612 - L2 LINE L2 -819 2495 1996 258 314 48 38 chr4 28467505 28467610 -155821052 + L2 LINE L2 3208 3313 0 210 264 246 0 chr4 28467718 28467828 -155820834 + MIR SINE MIR 124 260 -2 1055 188 5 24 chr4 28468450 28468663 -155819999 + MER3 DNA MER1_type 1 209 0 290 283 66 33 chr4 28468779 28468931 -155819731 - MIR SINE MIR -75 187 31 228 271 17 0 chr4 28469879 28469938 -155818724 + CT-rich Low_complexity Low_complexity 2 61 0 217 339 100 66 chr4 28469939 28470228 -155818434 - L2 LINE L2 -65 3207 2909 407 250 167 21 chr4 28470349 28470493 -155818169 + MIR SINE MIR 86 250 -12 2022 122 11 0 chr4 28470824 28471102 -155817560 + AluSq SINE Alu 1 281 -32 278 0 54 0 chr4 28471103 28471140 -155817522 + (CAAAA)n Simple_repeat Simple_repeat 1 39 0 260 311 0 86 chr4 28471251 28471376 -155817286 - MIR SINE MIR -63 145 39 475 326 58 13 chr4 28471427 28471653 -155817009 - MIR SINE MIR -3 259 22 3273 85 2 11 chr4 28473571 28474019 -155814643 - MLT2A1 LTR ERVL 0 444 1 23 33 0 0 chr4 28474111 28474141 -155814521 + AT_rich Low_complexity Low_complexity 1 30 0 2064 147 0 3 chr4 28474562 28474875 -155813787 - AluSx SINE Alu 0 312 1 367 226 212 22 chr4 28475394 28475531 -155813131 - MIR SINE MIR -16 246 84 195 100 0 0 chr4 28475786 28475816 -155812846 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 512 250 8 8 chr4 28476579 28476711 -155811951 + L1MC4 LINE L1 7910 8041 -1 277 229 0 0 chr4 28476778 28476839 -155811823 + MER96 DNA MER1_type? 1 61 -114 433 233 308 0 chr4 28476839 28476911 -155811751 - MER96 DNA MER1_type 0 175 2 189 182 227 23 chr4 28477090 28477134 -155811528 - L2 LINE L2 -50 3222 3170 2354 154 0 8 chr4 28477773 28478150 -155810512 + L1PA16 LINE L1 5793 6166 0 211 280 176 48 chr4 28478376 28478501 -155810161 + MER5B DNA MER1_type 27 167 -11 938 184 5 65 chr4 28478511 28478633 -155810029 - MER5B DNA MER1_type -4 174 65 2388 88 17 0 chr4 28478633 28478929 -155809733 - AluSx SINE Alu -11 301 1 938 184 5 65 chr4 28478929 28478991 -155809671 - MER5B DNA MER1_type -113 65 1 2044 116 10 42 chr4 28479031 28479341 -155809321 + AluSq SINE Alu 1 300 -13 442 288 134 18 chr4 28481783 28482062 -155806600 + L2 LINE L2 2716 3025 -288 341 302 70 12 chr4 28482114 28482286 -155806376 - LTR16C LTR ERVL 0 491 310 391 328 40 75 chr4 28482512 28482765 -155805897 - L2 LINE L2 -96 3176 2933 725 299 38 46 chr4 28482859 28483237 -155805425 + L1ME3 LINE L1 5455 5829 -333 31 26 0 0 chr4 28483274 28483312 -155805350 + AT_rich Low_complexity Low_complexity 1 38 0 976 133 0 0 chr4 28483446 28483581 -155805081 + AluSq SINE Alu 35 169 -144 2470 54 0 3 chr4 28483741 28484036 -155804626 - AluY SINE Alu -2 309 16 409 227 57 0 chr4 28484232 28484337 -155804325 + MIR SINE MIR 61 170 -62 449 266 191 25 chr4 28485333 28485532 -155803130 + MIR SINE MIR 21 252 -10 209 409 0 11 chr4 28485602 28485690 -155802972 - L2 LINE L2 -18 3254 3168 284 235 24 24 chr4 28486215 28486300 -155802362 + GA-rich Low_complexity Low_complexity 5 89 0 259 204 87 48 chr4 28486597 28486700 -155801962 + MER113 DNA MER1_type? 10 116 -405 821 209 134 0 chr4 28486806 28486993 -155801669 + MIR SINE MIR 1 212 -50 282 314 88 24 chr4 28487289 28487420 -155801242 - MIR SINE MIR -45 163 25 186 195 39 0 chr4 28487585 28487662 -155801000 + (TTA)n Simple_repeat Simple_repeat 2 81 0 330 230 14 2 chr4 28487874 28487960 -155800702 + MER5A DNA MER1_type 36 131 -57 190 289 0 0 chr4 28488637 28488682 -155799980 + L2 LINE L2 3269 3313 0 5818 122 13 2 chr4 28490430 28491298 -155797364 + L1PA16 LINE L1 5254 6130 -36 616 307 91 13 chr4 28491644 28491875 -155796787 + MIR SINE MIR 14 262 0 225 247 57 95 chr4 28492304 28492462 -155796200 + L1ME LINE L1 5470 5621 -543 2277 117 0 0 chr4 28492597 28492896 -155795766 - AluSx SINE Alu -13 299 1 282 271 36 50 chr4 28492910 28493050 -155795612 + MER104 DNA Tc2 39 176 -4 1159 244 67 132 chr4 28493891 28494634 -155794028 - L2 LINE L2 -1 3312 2522 1674 65 0 0 chr4 28494634 28494833 -155793829 + AluY SINE Alu 1 199 -112 439 47 0 151 chr4 28494833 28494919 -155793743 + AluY SINE Alu 239 311 0 1159 244 67 132 chr4 28494919 28495183 -155793479 - L2 LINE L2 -789 2524 2301 350 206 53 175 chr4 28495999 28496188 -155792474 + MIR SINE MIR 41 206 -2 347 302 26 79 chr4 28496370 28496426 -155792236 + MIR SINE MIR 20 77 -185 2071 119 0 7 chr4 28496426 28496712 -155791950 - AluSx SINE Alu -7 305 22 347 302 26 79 chr4 28496712 28496844 -155791818 + MIR SINE MIR 77 198 -64 210 71 0 0 chr4 28496870 28496898 -155791764 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 473 232 0 0 chr4 28496923 28497022 -155791640 - LTR33A LTR ERVL -2 521 423 1929 144 3 41 chr4 28497189 28497509 -155791153 - AluSq SINE Alu -5 308 1 35 0 0 0 chr4 28497583 28497618 -155791044 + AT_rich Low_complexity Low_complexity 1 35 0 207 206 0 0 chr4 28498053 28498087 -155790575 + L2 LINE L2 3234 3267 -46 5508 35 2 14 chr4 28498824 28499512 -155789150 + L1PA4 LINE L1 5528 6155 0 193 295 63 32 chr4 28499545 28499640 -155789022 - L2 LINE L2 -35 3278 3181 268 269 56 56 chr4 28500959 28501067 -155787595 - MIR3 SINE MIR -18 190 83 1353 232 122 28 chr4 28501106 28501572 -155787090 + MLT1H LTR MaLR 18 527 -22 23 0 0 0 chr4 28501663 28501686 -155786976 + AT_rich Low_complexity Low_complexity 1 23 0 344 223 8 92 chr4 28502012 28502142 -155786520 + MER113 DNA MER1_type? 1 119 -402 245 327 167 18 chr4 28502897 28503065 -155785597 + L3 LINE CR1 404 596 -981 518 294 71 47 chr4 28503110 28503321 -155785341 + MIR SINE MIR 47 262 0 476 313 174 30 chr4 28503347 28503807 -155784855 + L3 LINE CR1 571 1096 -481 2719 52 12 0 chr4 28503808 28504133 -155784529 - L1PA8 LINE L1 -4 6168 5840 22 35 0 0 chr4 28505329 28505358 -155783304 + AT_rich Low_complexity Low_complexity 1 29 0 183 80 0 0 chr4 28505967 28505992 -155782670 + (ATATG)n Simple_repeat Simple_repeat 1 25 0 256 159 16 16 chr4 28506049 28506112 -155782550 + CT-rich Low_complexity Low_complexity 2 64 0 462 65 0 0 chr4 28506273 28506335 -155782327 + (CA)n Simple_repeat Simple_repeat 2 63 0 26 30 0 0 chr4 28509839 28509872 -155778790 + AT_rich Low_complexity Low_complexity 1 33 0 241 301 14 0 chr4 28510487 28510560 -155778102 - MIR3 SINE MIR -29 179 106 476 271 96 27 chr4 28510609 28510797 -155777865 - MIR SINE MIR -15 247 47 471 35 0 0 chr4 28511444 28511501 -155777161 + (TG)n Simple_repeat Simple_repeat 2 58 0 395 333 92 70 chr4 28511863 28512091 -155776571 - L2 LINE L2 -1 3271 3039 387 245 19 57 chr4 28512132 28512238 -155776424 + MIR SINE MIR 44 145 -63 230 346 68 44 chr4 28515028 28515323 -155773339 + L2 LINE L2 2848 3149 -123 422 310 70 0 chr4 28515749 28515878 -155772784 + L2 LINE L2 3133 3270 -2 27 0 0 0 chr4 28515934 28515961 -155772701 + AT_rich Low_complexity Low_complexity 1 27 0 205 372 101 0 chr4 28516066 28516195 -155772467 + L3 LINE CR1 1430 1571 -6 496 281 28 12 chr4 28517116 28517280 -155771382 - MIR SINE MIR -36 172 1 878 214 71 0 chr4 28517339 28517535 -155771127 + MER20 DNA MER1_type 10 219 0 212 139 0 23 chr4 28517715 28517758 -155770904 + (GAA)n Simple_repeat Simple_repeat 1 42 0 339 296 65 41 chr4 28519014 28519183 -155769479 + MIR SINE MIR 78 250 -12 584 179 38 0 chr4 28519916 28520022 -155768640 - L2 LINE L2 -21 3292 3183 487 221 25 33 chr4 28520073 28520195 -155768467 - MIR SINE MIR -39 223 103 950 110 0 0 chr4 28520280 28520416 -155768246 + L1PB1 LINE L1 6016 6151 0 2980 88 0 3 chr4 28520439 28520804 -155767858 + THE1B LTR MaLR 1 364 0 2491 86 0 0 chr4 28521395 28521699 -155766963 - AluSg SINE Alu -6 304 1 300 53 0 0 chr4 28522972 28523010 -155765652 + (TG)n Simple_repeat Simple_repeat 1 38 0 347 266 11 0 chr4 28523174 28523268 -155765394 - MLT1L LTR MaLR 0 615 521 1068 214 142 36 chr4 28523278 28523359 -155765303 + MLT1F1 LTR MaLR 11 82 -485 1153 178 13 44 chr4 28523359 28523584 -155765078 + MER20 DNA MER1_type 1 218 -1 1068 214 142 36 chr4 28523584 28523951 -155764711 + MLT1F1 LTR MaLR 82 567 0 501 263 193 29 chr4 28523951 28524224 -155764438 - MLT1L LTR MaLR -90 525 208 458 243 0 122 chr4 28524947 28525095 -155763567 + MIR SINE MIR 9 138 -70 2151 109 7 3 chr4 28525587 28525890 -155762772 - AluSg SINE Alu -4 306 3 406 200 24 146 chr4 28526206 28526299 -155762363 + MIR SINE MIR 13 80 -182 1997 83 0 93 chr4 28526299 28526641 -155762021 - AluSx SINE Alu 0 313 1 406 200 24 146 chr4 28526641 28526711 -155761951 + MIR SINE MIR 80 157 -105 716 323 30 4 chr4 28526722 28526957 -155761705 - MIR SINE MIR -9 253 13 24 32 0 0 chr4 28527756 28527787 -155760875 + AT_rich Low_complexity Low_complexity 1 31 0 432 275 84 39 chr4 28528374 28528552 -155760110 + MIR SINE MIR 6 191 -71 759 281 113 0 chr4 28528602 28528833 -155759829 + MIR SINE MIR 6 262 0 193 229 0 66 chr4 28528892 28528953 -155759709 - L2 LINE L2 -82 3231 3175 180 255 0 21 chr4 28528950 28528997 -155759665 + MIR SINE MIR 204 249 -13 * 2611 161 21 0 chr4 28529002 28529424 -155759238 + MSTB1 LTR MaLR 1 431 -1 272 242 0 22 chr4 28530067 28530158 -155758504 + CT-rich Low_complexity Low_complexity 4 92 0 397 203 0 0 chr4 28532165 28532234 -155756428 + L2 LINE L2 3245 3313 0 1729 175 27 0 chr4 28532450 28532742 -155755920 - AluJo SINE Alu -8 304 5 414 319 35 0 chr4 28532754 28532895 -155755767 - MIR3 SINE MIR -62 146 1 1336 138 69 0 chr4 28533345 28533548 -155755114 + AluJb SINE Alu 86 302 -10 1680 208 9 9 chr4 28535928 28536269 -155752393 + MER58B DNA MER1_type 1 341 0 2410 77 3 29 chr4 28536600 28536913 -155751749 + AluSq SINE Alu 1 305 -8 354 340 45 13 chr4 28536977 28537133 -155751529 + MIR3 SINE MIR 30 190 -18 236 35 0 0 chr4 28538353 28538382 -155750280 - LTR10D LTR ERV1 0 513 485 * 514 30 0 0 chr4 28538380 28538446 -155750216 - LTR10D LTR ERV1 -446 67 2 610 302 15 25 chr4 28538773 28538975 -155749687 - MIR SINE MIR -13 249 50 2236 81 3 3 chr4 28538975 28539259 -155749403 + AluY SINE Alu 14 297 -14 1044 201 246 40 chr4 28540229 28540274 -155748388 - MLT2B2 LTR ERVL 0 515 481 258 32 0 0 chr4 28540274 28540305 -155748357 + (CA)n Simple_repeat Simple_repeat 2 32 0 252 0 0 0 chr4 28540304 28540332 -155748330 + (GA)n Simple_repeat Simple_repeat 2 29 0 * 1044 201 246 40 chr4 28540305 28540713 -155747949 - MLT2B2 LTR ERVL -34 481 1 334 293 50 29 chr4 28540745 28540885 -155747777 - MIR3 SINE MIR -65 143 1 215 100 0 25 chr4 28540955 28540995 -155747667 + (ATG)n Simple_repeat Simple_repeat 3 41 0 182 304 266 0 chr4 28541067 28541146 -155747516 - MIR SINE MIR -115 147 48 192 330 26 26 chr4 28541266 28541381 -155747281 - L3b LINE CR1 -360 1223 1109 341 234 39 94 chr4 28541665 28541793 -155746869 + L2 LINE L2 3193 3313 0 199 171 0 0 chr4 28543227 28543262 -155745400 - MIR SINE MIR -6 256 222 440 288 139 53 chr4 28543874 28544211 -155744451 + L2 LINE L2 2948 3313 0 189 245 0 0 chr4 28544725 28544774 -155743888 + CT-rich Low_complexity Low_complexity 4 52 0 348 252 65 0 chr4 28546136 28546259 -155742403 - MER103 DNA DNA -33 133 3 208 38 113 0 chr4 28547434 28547487 -155741175 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 212 214 0 24 chr4 28547823 28547865 -155740797 - L2 LINE L2 -16 3256 3216 23 33 0 0 chr4 28547954 28547984 -155740678 + AT_rich Low_complexity Low_complexity 1 30 0 2105 73 0 73 chr4 28548134 28548448 -155740214 - AluY SINE Alu -20 291 1 209 257 47 17 chr4 28548609 28548694 -155739968 + MIR3 SINE MIR 98 154 -54 2200 133 0 0 chr4 28548912 28549212 -155739450 - AluSx SINE Alu -12 300 1 414 269 13 168 chr4 28549235 28549473 -155739189 + MIR SINE MIR 8 208 -54 1539 183 57 54 chr4 28550008 28550397 -155738265 + MLT1B LTR MaLR 1 390 0 575 170 11 16 chr4 28550437 28550627 -155738035 + GA-rich Low_complexity Low_complexity 1 189 0 887 134 0 43 chr4 28551035 28551199 -155737463 + L1PA10 LINE L1 6012 6168 0 22 0 0 0 chr4 28552731 28552753 -155735909 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr4 28553680 28553704 -155734958 + (A)n Simple_repeat Simple_repeat 1 24 0 194 341 43 22 chr4 28553754 28553892 -155734770 + L2 LINE L2 2719 2859 -455 476 303 65 11 chr4 28553996 28554257 -155734405 - LTR67 LTR ERVL -6 551 277 352 288 96 16 chr4 28554295 28554420 -155734242 - LTR67 LTR ERVL -352 205 71 239 330 42 17 chr4 28554607 28554725 -155733937 - MIR SINE MIR -50 212 92 852 288 118 19 chr4 28555704 28556121 -155732541 - MLT1J LTR MaLR -43 468 11 478 332 47 37 chr4 28556150 28556364 -155732298 + MIR SINE MIR 47 262 0 1047 231 0 14 chr4 28556381 28556602 -155732060 + MER58A DNA MER1_type 7 224 0 199 326 58 0 chr4 28556647 28556733 -155731929 + MIR SINE MIR 124 214 -48 215 154 0 19 chr4 28557178 28557230 -155731432 + GA-rich Low_complexity Low_complexity 2 52 0 560 284 21 7 chr4 28558222 28558364 -155730298 - MIR SINE MIR -62 146 25 477 285 92 14 chr4 28558500 28558707 -155729955 + L3b LINE CR1 1123 1345 -238 21 0 0 0 chr4 28558963 28558984 -155729678 + AT_rich Low_complexity Low_complexity 1 21 0 423 320 17 29 chr4 28559407 28559579 -155729083 + MIR3 SINE MIR 38 207 -1 388 335 38 32 chr4 28560074 28560259 -155728403 - MIR SINE MIR -42 220 35 317 347 51 23 chr4 28560863 28561079 -155727583 + L2 LINE L2 2837 3058 -214 5232 61 12 1 chr4 28561286 28561960 -155726702 - L1PA7 LINE L1 -1 6153 5473 201 283 0 0 chr4 28562222 28562275 -155726387 + (TA)n Simple_repeat Simple_repeat 2 54 0 334 83 70 38 chr4 28562352 28562509 -155726153 + (TA)n Simple_repeat Simple_repeat 1 162 0 24 0 0 0 chr4 28563016 28563040 -155725622 + AT_rich Low_complexity Low_complexity 1 24 0 219 241 194 74 chr4 28563078 28563186 -155725476 + L2 LINE L2 3193 3313 0 333 164 57 0 chr4 28563466 28563625 -155725037 + (TA)n Simple_repeat Simple_repeat 2 169 0 349 356 23 5 chr4 28565063 28565280 -155723382 - MIR SINE MIR -21 241 20 216 177 0 48 chr4 28565742 28565866 -155722796 + (TTA)n Simple_repeat Simple_repeat 2 119 0 518 341 27 27 chr4 28565872 28566095 -155722567 - MIR SINE MIR -26 236 14 235 274 16 0 chr4 28566701 28566763 -155721899 - MIR SINE MIR -10 252 190 499 239 61 49 chr4 28567056 28567219 -155721443 - MIR SINE MIR -90 172 8 231 295 105 75 chr4 28569127 28569327 -155719335 + L2 LINE L2 2956 3161 -111 796 230 85 0 chr4 28570181 28570381 -155718281 - MER58A DNA MER1_type -5 219 3 564 253 48 16 chr4 28570392 28570578 -155718084 + MER117 DNA MER1_type 2 193 -4 1869 133 41 3 chr4 28570993 28571287 -155717375 - AluSx SINE Alu -7 305 1 180 0 0 0 chr4 28573009 28573029 -155715633 + (TTG)n Simple_repeat Simple_repeat 2 21 0 290 195 13 0 chr4 28573536 28573613 -155715049 + CT-rich Low_complexity Low_complexity 2 79 0 270 0 0 0 chr4 28575564 28575594 -155713068 + (CA)n Simple_repeat Simple_repeat 1 30 0 261 0 0 0 chr4 28575593 28575622 -155713040 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 1932 112 0 4 chr4 28575663 28575921 -155712741 - AluSc SINE Alu -52 257 1 330 336 22 29 chr4 28576606 28576743 -155711919 - MIR SINE MIR -57 151 16 641 289 97 36 chr4 28577026 28577372 -155711290 - L2 LINE L2 -292 3021 2662 220 228 53 18 chr4 28578287 28578344 -155710318 + MIR SINE MIR 36 94 -168 300 337 64 45 chr4 28578844 28579046 -155709616 + MIR3 SINE MIR 3 208 0 230 296 86 0 chr4 28579413 28579494 -155709168 - MIR SINE MIR -83 125 38 185 83 28 0 chr4 28579509 28579545 -155709117 + (TTTTTG)n Simple_repeat Simple_repeat 5 41 0 2132 131 7 0 chr4 28579547 28579844 -155708818 - AluSx SINE Alu -13 299 1 684 183 6 72 chr4 28580457 28580637 -155708025 + MER104 DNA Tc2 10 177 -3 209 305 0 0 chr4 28580708 28580767 -155707895 + CT-rich Low_complexity Low_complexity 2 60 0 407 309 179 45 chr4 28580767 28581213 -155707449 - L2 LINE L2 -1 3312 2807 21 0 0 0 chr4 28582626 28582647 -155706015 + AT_rich Low_complexity Low_complexity 1 21 0 541 277 45 55 chr4 28583583 28583803 -155704859 + MIR SINE MIR 31 248 -14 446 261 134 13 chr4 28583938 28584095 -155704567 - L2 LINE L2 0 3313 3138 203 250 0 0 chr4 28584857 28584905 -155703757 + (CA)n Simple_repeat Simple_repeat 1 48 0 234 353 47 0 chr4 28586589 28586674 -155701988 - L2 LINE L2 -27 3245 3157 25 0 0 0 chr4 28586701 28586726 -155701936 + AT_rich Low_complexity Low_complexity 1 25 0 2434 206 96 5 chr4 28587889 28588482 -155700180 - MLT1E1 LTR MaLR 0 654 8 226 218 0 18 chr4 28588599 28588654 -155700008 + MER116 DNA Mariner 4 57 -23 266 260 0 26 chr4 28588657 28588734 -155699928 + (CATATA)n Simple_repeat Simple_repeat 2 76 0 187 254 0 73 chr4 28589943 28589998 -155698664 - L2 LINE L2 -1 3312 3262 312 298 159 31 chr4 28590495 28590753 -155697909 - MER102b DNA MER1_type 0 341 51 343 269 167 21 chr4 28592518 28592752 -155695910 - L1ME4a LINE L1 -218 5903 5636 325 285 194 7 chr4 28592775 28592919 -155695743 - MIR SINE MIR -3 259 89 647 238 41 17 chr4 28595120 28595292 -155693370 + MIR SINE MIR 63 238 -24 249 298 37 78 chr4 28595832 28596050 -155692612 + L2 LINE L2 3079 3287 -26 367 232 10 10 chr4 28596289 28596388 -155692274 + MLT1I LTR MaLR 304 402 -7 358 313 188 14 chr4 28597680 28597888 -155690774 - MIR SINE MIR -7 255 12 536 309 43 0 chr4 28599506 28599736 -155688926 + Charlie8 DNA MER1_type 36 275 -2142 208 326 95 0 chr4 28599906 28600001 -155688661 + MIR3 SINE MIR 88 191 -17 300 330 54 9 chr4 28600547 28600659 -155688003 - MIR3 SINE MIR -3 205 89 375 73 0 0 chr4 28600692 28600747 -155687915 + (TG)n Simple_repeat Simple_repeat 1 55 0 658 286 80 9 chr4 28600788 28601012 -155687650 + MIR SINE MIR 23 262 0 191 375 8 33 chr4 28601056 28601176 -155687486 + MIR SINE MIR 34 150 -112 716 304 13 22 chr4 28601383 28601610 -155687052 - MIR SINE MIR -10 252 28 351 293 75 0 chr4 28602076 28602209 -155686453 + MIR SINE MIR 10 152 -110 632 213 170 32 chr4 28602265 28602518 -155686144 + MER5C DNA MER1_type 34 321 -3 290 322 81 13 chr4 28602961 28603110 -155685552 + MIR SINE MIR 48 206 -56 219 279 186 12 chr4 28604365 28604451 -155684211 - L2 LINE L2 0 3272 3172 272 298 19 48 chr4 28604589 28604693 -155683969 + L2 LINE L2 3172 3272 0 472 215 50 0 chr4 28605076 28605197 -155683465 - MER20 DNA MER1_type -9 210 84 383 285 93 13 chr4 28605342 28605493 -155683169 - MIR3 SINE MIR -10 198 36 197 62 0 31 chr4 28605602 28605634 -155683028 + (TAA)n Simple_repeat Simple_repeat 3 33 0 321 296 56 97 chr4 28605635 28605902 -155682760 - MIR SINE MIR -6 256 1 222 253 0 67 chr4 28606102 28606177 -155682485 - L2 LINE L2 -1 3271 3202 330 278 99 60 chr4 28606215 28606366 -155682296 + L2 LINE L2 3116 3272 0 215 271 119 25 chr4 28606411 28606529 -155682133 - MIR SINE MIR -64 198 70 792 277 42 47 chr4 28606588 28606825 -155681837 + MIR SINE MIR 5 235 -27 210 91 0 0 chr4 28606898 28606931 -155681731 + (CA)n Simple_repeat Simple_repeat 2 34 0 969 238 60 43 chr4 28607752 28608172 -155680490 + L1MC5 LINE L1 7455 7881 -80 26 0 0 0 chr4 28608685 28608711 -155679951 + AT_rich Low_complexity Low_complexity 1 26 0 2049 138 0 19 chr4 28608753 28609071 -155679591 + AluSx SINE Alu 1 312 0 22 0 0 0 chr4 28609224 28609246 -155679416 + AT_rich Low_complexity Low_complexity 1 22 0 980 190 58 0 chr4 28609481 28609655 -155679007 + MIR SINE MIR 6 189 -73 1760 274 28 15 chr4 28609683 28610288 -155678374 + L1ME3 LINE L1 5439 6051 -111 184 344 0 0 chr4 28610376 28610437 -155678225 + MIR SINE MIR 200 260 -2 390 257 87 60 chr4 28610607 28610790 -155677872 + MIR SINE MIR 8 195 -67 326 346 52 15 chr4 28611302 28611438 -155677224 + L2 LINE L2 3122 3262 -10 608 321 5 16 chr4 28611460 28611647 -155677015 - MER91A DNA MER1_type -3 193 9 269 309 25 12 chr4 28612950 28613031 -155675631 - MIR3 SINE MIR -16 192 111 214 274 16 16 chr4 28613153 28613215 -155675447 + MIR SINE MIR 92 153 -109 240 167 0 0 chr4 28613341 28613389 -155675273 + (CAT)n Simple_repeat Simple_repeat 1 48 0 1506 270 63 2 chr4 28614585 28615074 -155673588 + LTR33 LTR ERVL 1 519 -2 32 43 0 0 chr4 28618729 28618775 -155669887 + AT_rich Low_complexity Low_complexity 1 46 0 1696 201 77 29 chr4 28618865 28619308 -155669354 - MLT1C LTR MaLR -3 464 1 926 287 103 15 chr4 28620132 28620529 -155668133 + MLT1J2 LTR MaLR 13 444 -6 486 257 120 6 chr4 28620726 28620909 -155667753 + L2 LINE L2 3108 3311 -2 900 186 37 28 chr4 28620930 28621145 -155667517 - MIR SINE MIR -31 231 15 226 279 33 0 chr4 28622391 28622452 -155666210 + MIR SINE MIR 89 151 -111 222 91 0 0 chr4 28622624 28622657 -155666005 + (TG)n Simple_repeat Simple_repeat 2 34 0 210 118 0 0 chr4 28622688 28622722 -155665940 + (TA)n Simple_repeat Simple_repeat 1 34 0 362 219 0 62 chr4 28622723 28622819 -155665843 + L1MC4 LINE L1 6614 6703 -1339 2323 93 0 7 chr4 28623690 28623991 -155664671 - AluSg SINE Alu -11 299 1 2410 88 0 3 chr4 28624401 28624708 -155663954 + AluY SINE Alu 1 306 -5 651 301 22 26 chr4 28624888 28625117 -155663545 - MIR SINE MIR 0 262 35 218 191 0 0 chr4 28625729 28625771 -155662891 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 2291 113 0 0 chr4 28625850 28626150 -155662512 + AluSx SINE Alu 1 300 -12 2472 67 0 25 chr4 28626350 28626666 -155661996 - AluY SINE Alu -3 308 1 674 241 108 22 chr4 28627101 28627333 -155661329 + MIR SINE MIR 11 262 0 211 280 0 0 chr4 28628352 28628402 -155660260 + (TAG)n Simple_repeat Simple_repeat 1 50 0 713 298 30 25 chr4 28628411 28628646 -155660016 - MIR SINE MIR -26 236 1 377 288 34 8 chr4 28629526 28629644 -155659018 - MIR SINE MIR -94 168 48 437 267 19 0 chr4 28630121 28630226 -155658436 + MIR SINE MIR 76 182 -80 3909 170 10 16 chr4 28630243 28630950 -155657712 + L1MB3 LINE L1 5442 6144 -39 183 286 20 0 chr4 28631028 28631077 -155657585 + MIR SINE MIR 204 253 -9 2023 94 8 0 chr4 28632160 28632425 -155656237 + AluSx SINE Alu 1 267 -45 414 231 63 28 chr4 28634306 28634449 -155654213 - MIR SINE MIR 0 262 115 205 352 79 48 chr4 28634445 28634672 -155653990 - MIR SINE MIR -22 240 7 * 232 286 62 54 chr4 28636031 28636143 -155652519 + L2 LINE L2 3118 3230 -42 362 230 43 76 chr4 28636924 28637095 -155651567 + MIR SINE MIR 49 215 -47 280 353 7 13 chr4 28639129 28639282 -155649380 - MIR SINE MIR -6 256 105 257 74 0 56 chr4 28640313 28640367 -155648295 + (T)n Simple_repeat Simple_repeat 1 51 0 21 36 0 0 chr4 28640705 28640733 -155647929 + AT_rich Low_complexity Low_complexity 1 28 0 228 111 0 0 chr4 28641488 28641524 -155647138 + (TG)n Simple_repeat Simple_repeat 1 36 0 292 330 135 42 chr4 28641574 28641862 -155646800 - L2 LINE L2 -45 3227 2913 320 303 13 0 chr4 28641890 28641966 -155646696 - L2 LINE L2 -14 3258 3182 573 308 86 5 chr4 28642528 28642726 -155645936 - MIR SINE MIR -9 253 40 221 290 60 50 chr4 28643423 28643523 -155645139 + MIR3 SINE MIR 10 110 -98 1670 215 18 3 chr4 28644167 28644497 -155644165 + MER58B DNA MER1_type 6 340 -1 246 357 58 13 chr4 28645237 28645391 -155643271 + MIR3 SINE MIR 45 205 -3 97 25 0 0 chr4 28645596 28645714 -155642948 + AT_rich Low_complexity Low_complexity 1 118 0 28 29 0 0 chr4 28646093 28646128 -155642534 + AT_rich Low_complexity Low_complexity 1 35 0 2031 148 0 7 chr4 28646527 28646837 -155641825 - AluSc SINE Alu -1 308 1 195 162 0 0 chr4 28647091 28647128 -155641534 + (ATG)n Simple_repeat Simple_repeat 1 37 0 498 232 15 69 chr4 28647153 28647335 -155641327 - MIR SINE MIR -65 143 5 269 232 53 32 chr4 28647705 28647800 -155640862 + MIR SINE MIR 67 163 -99 231 180 164 0 chr4 28647804 28647865 -155640797 + MIR SINE MIR 120 190 -72 351 165 24 24 chr4 28647952 28648037 -155640625 - L1MA9 LINE L1 0 6312 6228 2812 88 14 8 chr4 28649014 28649376 -155639286 + THE1B LTR MaLR 1 364 0 549 258 90 6 chr4 28649653 28649831 -155638831 - MIR SINE MIR -22 240 48 3533 271 122 52 chr4 28650229 28651120 -155637542 - HAL1 LINE L1 -214 2293 1466 432 0 0 0 chr4 28651120 28651168 -155637494 + (TG)n Simple_repeat Simple_repeat 2 49 0 3533 271 122 52 chr4 28651168 28652369 -155636293 - HAL1 LINE L1 -1041 1466 53 432 281 103 38 chr4 28652497 28652989 -155635673 - L1ME LINE L1 -327 5794 5270 373 321 55 43 chr4 28653367 28654018 -155634644 - L1ME LINE L1 -1313 4833 4175 236 245 0 38 chr4 28654051 28654104 -155634558 - L1ME LINE L1 -2044 4102 4052 630 299 39 13 chr4 28654114 28654348 -155634314 - MIR SINE MIR 0 262 23 213 258 31 78 chr4 28655360 28655488 -155633174 + MIR SINE MIR 91 212 -50 208 311 27 14 chr4 28656607 28656681 -155631981 - L2 LINE L2 -30 3242 3168 729 261 5 5 chr4 28657375 28657563 -155631099 - MIR SINE MIR -5 257 70 471 315 92 27 chr4 28657784 28658076 -155630586 + L3b LINE CR1 1117 1427 -156 251 294 203 0 chr4 28658881 28658990 -155629672 - MIR SINE MIR -59 149 33 423 250 169 22 chr4 28659320 28659504 -155629158 + MIR SINE MIR 31 241 -21 237 293 137 72 chr4 28659798 28660061 -155628601 + L2 LINE L2 2817 3096 -176 779 260 43 17 chr4 28660284 28660515 -155628147 - MIR SINE MIR -21 241 5 221 303 92 0 chr4 28661099 28661175 -155627487 - MIR SINE MIR -57 151 69 1681 169 6 47 chr4 28661562 28661882 -155626780 + AluJo SINE Alu 1 307 -5 210 171 0 0 chr4 28661888 28661929 -155626733 + GA-rich Low_complexity Low_complexity 2 42 0 407 335 157 0 chr4 28661970 28662167 -155626495 + MIR SINE MIR 22 249 -13 441 257 29 0 chr4 28662392 28662497 -155626165 + MIR SINE MIR 81 188 -74 2543 48 7 7 chr4 28662976 28663305 -155625357 - AluY SINE Alu 0 329 1 282 95 0 0 chr4 28665424 28665466 -155623196 + (CA)n Simple_repeat Simple_repeat 2 43 0 351 229 125 31 chr4 28665886 28665982 -155622680 - MER5B DNA MER1_type -71 107 3 621 336 114 33 chr4 28666073 28666469 -155622193 - L3 LINE CR1 -134 1443 1016 379 301 98 16 chr4 28666513 28666737 -155621925 - MIR SINE MIR -6 256 20 220 345 97 9 chr4 28666723 28666836 -155621826 - L3 LINE CR1 -562 1015 893 * 463 302 39 0 chr4 28667244 28667373 -155621289 + MIR SINE MIR 13 146 -116 335 315 94 47 chr4 28667396 28667631 -155621031 + MLT1I LTR MaLR 10 255 -154 1982 155 45 79 chr4 28668552 28668611 -155620051 + MLT1C LTR MaLR 35 94 -373 2236 104 3 23 chr4 28668611 28668919 -155619743 - AluSx SINE Alu -10 302 1 1982 155 45 79 chr4 28668919 28669135 -155619527 + MLT1C LTR MaLR 94 316 -151 1173 241 77 31 chr4 28669135 28669484 -155619178 - MLT1A1 LTR MaLR 0 365 1 2032 130 179 16 chr4 28669488 28669856 -155618806 + MSTA LTR MaLR 1 428 0 1982 155 45 79 chr4 28669856 28670018 -155618644 + MLT1C LTR MaLR 319 463 -4 920 212 0 0 chr4 28670443 28670594 -155618068 + FRAM SINE Alu 1 151 -15 198 0 0 0 chr4 28672783 28672805 -155615857 + (A)n Simple_repeat Simple_repeat 1 22 0 281 122 14 149 chr4 28673377 28673405 -155615257 + MER5A DNA MER1_type 33 63 -126 1868 33 0 5 chr4 28673405 28673617 -155615045 + L1PA5 LINE L1 5931 6141 -13 281 122 14 149 chr4 28673617 28673662 -155615000 + MER5A DNA MER1_type 63 96 -93 2509 117 104 15 chr4 28674544 28674937 -155613725 + MSTA LTR MaLR 1 428 0 753 184 0 0 chr4 28674968 28675109 -155613553 + L1MA4A LINE L1 6152 6292 -11 287 340 48 0 chr4 28675305 28675408 -155613254 - L2 LINE L2 -1 3271 3164 289 323 98 30 chr4 28676589 28676753 -155611909 - MIR SINE MIR -74 188 14 189 263 70 18 chr4 28677942 28677999 -155610663 - L2 LINE L2 0 3272 3213 571 251 69 17 chr4 28678374 28678549 -155610113 + MIR SINE MIR 67 250 -12 390 250 23 55 chr4 28679011 28679139 -155609523 - MER5A DNA MER1_type -53 136 13 1042 201 300 43 chr4 28680057 28680494 -155608168 + MLT1H LTR MaLR 1 549 0 209 327 38 44 chr4 28681145 28681304 -155607358 - L2 LINE L2 -473 2841 2684 220 322 99 13 chr4 28681316 28681468 -155607194 - L2 LINE L2 -1281 2033 1869 29 0 0 0 chr4 28681851 28681880 -155606782 + AT_rich Low_complexity Low_complexity 1 29 0 508 280 43 33 chr4 28682006 28682217 -155606445 - MIR SINE MIR -8 254 42 469 0 33 0 chr4 28682492 28682553 -155606109 + (CA)n Simple_repeat Simple_repeat 1 63 0 606 233 84 101 chr4 28682676 28682794 -155605868 + L2 LINE L2 3023 3141 -172 378 0 0 0 chr4 28682794 28682836 -155605826 + (CA)n Simple_repeat Simple_repeat 2 43 0 606 233 84 101 chr4 28682836 28683013 -155605649 + L2 LINE L2 3141 3313 0 433 335 30 26 chr4 28684215 28684460 -155604202 - MIR SINE MIR -17 245 4 700 257 12 82 chr4 28685641 28685898 -155602764 - MER102b DNA MER1_type 0 341 103 309 26 0 0 chr4 28686776 28686814 -155601848 + (TGGA)n Simple_repeat Simple_repeat 3 40 0 908 242 88 75 chr4 28687041 28687337 -155601325 + MLT1L LTR MaLR 150 456 -159 2173 125 0 0 chr4 28687337 28687641 -155601021 + AluSx SINE Alu 1 304 -8 908 242 88 75 chr4 28687641 28687799 -155600863 + MLT1L LTR MaLR 456 610 -5 291 171 79 26 chr4 28689723 28689799 -155598863 - L2 LINE L2 -1 3312 3233 335 296 115 46 chr4 28689899 28690203 -155598459 - L2 LINE L2 -100 3213 2889 204 115 0 58 chr4 28690473 28690525 -155598137 + (CAAAAA)n Simple_repeat Simple_repeat 2 50 0 426 330 67 21 chr4 28690686 28690880 -155597782 + MIR SINE MIR 35 237 -25 22 56 0 0 chr4 28693110 28693146 -155595516 + AT_rich Low_complexity Low_complexity 1 36 0 217 279 215 38 chr4 28693568 28693726 -155594936 - MIR SINE MIR -50 212 27 592 286 49 16 chr4 28693894 28694079 -155594583 - MIR SINE MIR -4 258 68 2214 151 31 14 chr4 28694079 28694437 -155594225 + MLT1A1 LTR MaLR 2 365 0 370 224 153 0 chr4 28694515 28694613 -155594049 + MIR SINE MIR 73 185 -77 399 113 0 0 chr4 28695849 28695911 -155592751 + (TG)n Simple_repeat Simple_repeat 1 62 0 189 0 0 0 chr4 28695912 28695933 -155592729 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 225 0 0 0 chr4 28695932 28695957 -155592705 + (GA)n Simple_repeat Simple_repeat 2 26 0 433 300 111 76 chr4 28696032 28696402 -155592260 - L2 LINE L2 -6 3266 2884 183 80 0 0 chr4 28696508 28696533 -155592129 + (TG)n Simple_repeat Simple_repeat 1 25 0 230 252 84 76 chr4 28697277 28697408 -155591254 + MER102a DNA MER1_type 193 324 -6 493 241 35 65 chr4 28699489 28699659 -155589003 - MIR SINE MIR -70 192 28 324 0 0 0 chr4 28699763 28699799 -155588863 + (CA)n Simple_repeat Simple_repeat 1 36 0 203 300 12 12 chr4 28701021 28701101 -155587561 + (TA)n Simple_repeat Simple_repeat 1 80 0 630 234 43 72 chr4 28701701 28701910 -155586752 + MIR SINE MIR 59 261 -1 441 0 0 0 chr4 28702027 28702076 -155586586 + (TG)n Simple_repeat Simple_repeat 1 49 0 197 105 0 26 chr4 28703022 28703046 -155585616 + (TAA)n Simple_repeat Simple_repeat 1 25 -12 5239 40 0 5 chr4 28703046 28703652 -155585010 + L1PA4 LINE L1 5548 6150 -5 197 105 0 26 chr4 28703652 28703665 -155584997 + (TAA)n Simple_repeat Simple_repeat 25 37 0 598 293 63 9 chr4 28703673 28703895 -155584767 - MIR SINE MIR -12 250 17 319 264 7 107 chr4 28703925 28704065 -155584597 - MIR SINE MIR -41 221 96 243 276 0 0 chr4 28704167 28704225 -155584437 + MIR3 SINE MIR 97 154 -54 342 331 203 19 chr4 28704338 28704698 -155583964 + L2 LINE L2 2846 3271 -1 368 275 108 30 chr4 28705543 28705710 -155582952 - MIR SINE MIR -20 242 63 275 260 187 0 chr4 28710083 28710206 -155578456 + MIR SINE MIR 21 166 -96 2420 129 17 50 chr4 28710213 28710331 -155578331 + MLT1B LTR MaLR 1 121 -269 2340 101 0 0 chr4 28710331 28710628 -155578034 + AluSg SINE Alu 3 299 -11 2420 129 17 50 chr4 28710628 28710912 -155577750 + MLT1B LTR MaLR 121 390 0 2071 63 4 4 chr4 28712633 28712885 -155575777 - AluY SINE Alu -16 295 44 758 281 62 57 chr4 28715638 28715886 -155572776 - L2 LINE L2 -4 3309 3057 2048 141 0 3 chr4 28715886 28716192 -155572470 + AluSx SINE Alu 1 305 -7 758 281 62 57 chr4 28716192 28716331 -155572331 - L2 LINE L2 -256 3057 2920 206 258 0 76 chr4 28716389 28716455 -155572207 - L2 LINE L2 -377 2937 2877 396 291 157 22 chr4 28716703 28716971 -155571691 - L2 LINE L2 -5 3308 3005 372 86 43 0 chr4 28717083 28717153 -155571509 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 247 330 116 9 chr4 28717198 28717310 -155571352 - L2 LINE L2 -5 3267 3144 197 396 101 0 chr4 28717498 28717647 -155571015 - L2 LINE L2 0 3272 3109 227 343 15 0 chr4 28717916 28717983 -155570679 - L2 LINE L2 -219 3053 2986 306 0 0 0 chr4 28718574 28718608 -155570054 + (TG)n Simple_repeat Simple_repeat 2 35 0 406 204 259 19 chr4 28718625 28718787 -155569875 - MIR SINE MIR -30 232 32 392 256 44 19 chr4 28719506 28719666 -155568996 + MER103 DNA DNA 1 164 -2 679 300 86 4 chr4 28720272 28720529 -155568133 + L2 LINE L2 3024 3301 -12 1244 132 24 5 chr4 28721259 28721464 -155567198 + AluSg/x SINE Alu 99 307 -5 185 262 155 24 chr4 28721977 28722061 -155566601 - L2 LINE L2 -18 3295 3201 399 323 23 8 chr4 28724207 28724340 -155564322 - MIR SINE MIR -122 140 6 1608 203 33 15 chr4 28724716 28725046 -155563616 - MLT1A2 LTR MaLR -38 336 1 546 198 97 123 chr4 28725078 28725305 -155563357 - MIR SINE MIR -32 230 10 214 343 0 0 chr4 28727394 28727467 -155561195 + GA-rich Low_complexity Low_complexity 1 73 0 235 330 59 17 chr4 28728498 28728616 -155560046 + MIR3 SINE MIR 5 127 -81 1563 169 88 0 chr4 28728836 28729108 -155559554 + AluJb SINE Alu 1 296 -16 185 245 41 0 chr4 28729144 28729193 -155559469 - L2 LINE L2 -98 3215 3165 552 214 18 18 chr4 28729227 28729339 -155559323 + MER81 DNA DNA 1 112 -2 324 305 124 19 chr4 28729584 28729689 -155558973 - MIR SINE MIR -63 145 30 458 308 0 0 chr4 28730542 28730659 -155558003 + MIR SINE MIR 4 120 -142 745 304 144 59 chr4 28730880 28731962 -155556700 + L2 LINE L2 2119 3305 -8 198 419 41 12 chr4 28732091 28732263 -155556399 + L3b LINE CR1 1253 1429 -154 579 222 78 30 chr4 28732384 28732551 -155556111 + MER104 DNA MER2_type 4 178 -2 444 295 66 53 chr4 28732567 28732702 -155555960 - MIR SINE MIR -11 251 110 2261 106 3 0 chr4 28732702 28733004 -155555658 - AluSg SINE Alu -7 303 1 444 295 66 53 chr4 28733004 28733112 -155555550 - MIR SINE MIR -152 110 5 356 206 167 10 chr4 28733705 28733807 -155554855 - L2 LINE L2 -5 3308 3191 224 256 182 58 chr4 28734034 28734276 -155554386 + L2 LINE L2 3025 3296 -17 300 283 46 101 chr4 28734881 28735100 -155553562 + MIR SINE MIR 20 226 -36 217 373 0 13 chr4 28735264 28735339 -155553323 - L2 LINE L2 -39 3233 3160 3523 83 21 4 chr4 28735341 28735457 -155553205 + L1PB1 LINE L1 5666 5779 -390 468 0 0 0 chr4 28735457 28735509 -155553153 + (CA)n Simple_repeat Simple_repeat 2 53 0 3523 83 21 4 chr4 28735509 28735888 -155552774 + L1PB1 LINE L1 5779 6169 0 229 320 105 29 chr4 28735888 28736060 -155552602 + MIR SINE MIR 28 212 -50 2162 119 0 7 chr4 28736087 28736389 -155552273 - AluSq SINE Alu -13 300 1 209 216 0 0 chr4 28738041 28738078 -155550584 + (CATATA)n Simple_repeat Simple_repeat 6 42 0 23 0 0 0 chr4 28738599 28738622 -155550040 + AT_rich Low_complexity Low_complexity 1 23 0 40 0 0 0 chr4 28738676 28738716 -155549946 + AT_rich Low_complexity Low_complexity 1 40 0 287 173 36 100 chr4 28738935 28738954 -155549708 - MIR SINE MIR -55 153 134 15786 130 14 38 chr4 28738954 28741233 -155547429 + Tigger1 DNA MER2_type 1 2219 -199 1822 167 6 22 chr4 28741233 28741550 -155547112 - AluSx SINE Alu 0 312 1 15786 130 14 38 chr4 28741550 28741745 -155546917 + Tigger1 DNA MER2_type 2219 2417 -1 287 173 36 100 chr4 28741745 28741835 -155546827 - MIR SINE MIR -74 134 51 5456 186 36 11 chr4 28741925 28742107 -155546555 + L1MC3 LINE L1 6670 6846 -939 384 71 0 0 chr4 28742107 28742163 -155546499 + (CA)n Simple_repeat Simple_repeat 1 56 0 5456 186 36 11 chr4 28742163 28743069 -155545593 + L1MC3 LINE L1 6846 7785 0 1686 142 127 0 chr4 28743084 28743344 -155545318 + AluSx SINE Alu 2 294 -8 364 296 94 25 chr4 28744200 28744359 -155544303 - L3 LINE CR1 -1 1576 1407 1376 249 63 40 chr4 28744389 28744625 -155544037 + L2 LINE L2 2829 3058 -255 2257 87 14 0 chr4 28744625 28744911 -155543751 + AluSc SINE Alu 1 290 -19 1376 249 63 40 chr4 28744911 28745148 -155543514 + L2 LINE L2 3058 3313 0 311 221 47 35 chr4 28745845 28745931 -155542731 - L2 LINE L2 0 3272 3186 424 313 61 0 chr4 28746620 28746751 -155541911 + L3 LINE CR1 1435 1573 -4 231 36 0 0 chr4 28746834 28746862 -155541800 + (A)n Simple_repeat Simple_repeat 1 28 0 643 234 0 0 chr4 28746911 28747039 -155541623 + FLAM_A SINE Alu 1 128 -5 543 217 89 45 chr4 28747175 28747332 -155541330 + MIR SINE MIR 48 211 -51 339 274 6 97 chr4 28747773 28747955 -155540707 - MER5A DNA MER1_type -5 176 6 250 252 194 15 chr4 28748070 28748217 -155540445 - MIR SINE MIR -62 146 20 549 320 77 0 chr4 28748998 28749220 -155539442 - MIR SINE MIR -4 258 20 703 255 39 20 chr4 28750585 28750789 -155537873 + MIR SINE MIR 17 224 -38 295 253 0 71 chr4 28750868 28750967 -155537695 - MIR SINE MIR -65 197 106 438 319 158 27 chr4 28751719 28752054 -155536608 + L3 LINE CR1 1083 1461 -116 277 306 8 58 chr4 28753080 28753201 -155535461 - MIR SINE MIR -56 206 92 266 250 29 103 chr4 28753657 28753793 -155534869 - L2 LINE L2 0 3313 3188 553 301 121 0 chr4 28754049 28754255 -155534407 + L2 LINE L2 2840 3070 -243 1016 137 62 52 chr4 28754256 28754467 -155534195 + MER7A DNA MER2_type 1 211 -135 279 266 168 21 chr4 28754743 28754886 -155533776 + MIR3 SINE MIR 24 187 -21 471 154 273 0 chr4 28757394 28757504 -155531158 - Charlie4 DNA MER1_type 0 1961 1822 190 244 50 144 chr4 28757935 28758095 -155530567 - L2 LINE L2 -36 3277 3133 261 0 0 0 chr4 28758258 28758287 -155530375 + (CA)n Simple_repeat Simple_repeat 2 30 0 441 176 0 0 chr4 28758288 28758356 -155530306 + Tigger2 DNA MER2_type 2 69 -2649 * 1253 109 31 10 chr4 28758346 28758539 -155530123 + Tigger2 DNA MER2_type 2273 2469 -249 700 186 8 0 chr4 28758539 28758668 -155529994 - FRAM SINE Alu 0 40 1 244 265 60 43 chr4 28758845 28758962 -155529700 - L2 LINE L2 0 3313 3195 274 260 43 61 chr4 28759603 28759798 -155528864 - L1ME4a LINE L1 -146 5975 5785 1844 125 88 0 chr4 28759798 28760070 -155528592 - AluSx SINE Alu -16 296 1 274 260 43 61 chr4 28760070 28760151 -155528511 - L1ME4a LINE L1 -336 5785 5704 1682 109 0 0 chr4 28761149 28761360 -155527302 + AluSq SINE Alu 1 211 -102 277 282 0 12 chr4 28761414 28761499 -155527163 + A-rich Low_complexity Low_complexity 3 86 0 384 237 153 17 chr4 28762208 28762326 -155526336 + L2 LINE L2 3179 3312 -1 335 129 12 35 chr4 28762343 28762428 -155526234 + GA-rich Low_complexity Low_complexity 3 85 0 2015 134 6 16 chr4 28762703 28763017 -155525645 - AluSx SINE Alu -1 311 1 1177 132 0 42 chr4 28764446 28764635 -155524027 + AluSx SINE Alu 5 185 -127 1612 187 14 14 chr4 28765786 28766075 -155522587 + AluJo SINE Alu 1 289 -23 266 167 17 0 chr4 28766081 28766141 -155522521 + GA-rich Low_complexity Low_complexity 1 61 0 319 243 81 36 chr4 28766337 28766448 -155522214 - L2 LINE L2 -4 3309 3194 224 77 26 0 chr4 28766472 28766511 -155522151 + (TA)n Simple_repeat Simple_repeat 2 41 0 231 240 90 50 chr4 28766527 28766627 -155522035 - MIR SINE MIR -13 249 146 349 285 58 29 chr4 28766673 28766810 -155521852 - MIR SINE MIR -113 149 9 1103 211 9 44 chr4 28767139 28767366 -155521296 + MER20 DNA MER1_type 1 219 0 597 284 0 25 chr4 28767489 28767686 -155520976 + Charlie7 DNA MER1_type 2420 2611 -1 335 237 141 22 chr4 28767742 28767877 -155520785 + MIR SINE MIR 102 252 -10 233 267 48 38 chr4 28767920 28768025 -155520637 + MIR SINE MIR 87 192 -70 212 310 50 20 chr4 28768639 28768739 -155519923 - MIR SINE MIR -110 152 50 739 265 31 31 chr4 28769032 28769289 -155519373 + MIR SINE MIR 6 262 0 740 290 41 41 chr4 28769764 28770009 -155518653 + MIR SINE MIR 6 250 -12 2545 56 0 0 chr4 28770591 28770897 -155517765 - AluY SINE Alu -5 306 1 222 91 0 0 chr4 28771139 28771172 -155517490 + (TG)n Simple_repeat Simple_repeat 2 34 0 203 229 43 71 chr4 28773212 28773282 -155515380 - L2 LINE L2 -11 3302 3235 1736 150 0 0 chr4 28773575 28773829 -155514833 - AluSx SINE Alu -7 305 52 3245 54 0 0 chr4 28773929 28774319 -155514343 - L1P3 LINE L1 -374 5798 5409 386 293 21 48 chr4 28774444 28774632 -155514030 - L2 LINE L2 -16 3297 3115 212 267 13 0 chr4 28774682 28774757 -155513905 + MIR SINE MIR 178 253 -9 502 256 159 19 chr4 28774782 28774989 -155513673 - MIR SINE MIR -21 241 6 229 174 0 0 chr4 28775794 28775840 -155512822 - MIR SINE MIR -97 165 120 240 226 11 54 chr4 28776401 28776494 -155512168 + GA-rich Low_complexity Low_complexity 3 91 0 207 0 0 0 chr4 28776810 28776833 -155511829 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 773 0 11 0 chr4 28777311 28777404 -155511258 - L1HS LINE L1 -98 6057 5964 750 27 0 7 chr4 28777403 28777496 -155511166 + L1HS LINE L1 6062 6165 -3 * 228 276 11 11 chr4 28777733 28777820 -155510842 + GA-rich Low_complexity Low_complexity 2 88 0 649 275 66 37 chr4 28777967 28778211 -155510451 + MIR SINE MIR 12 262 0 235 167 19 0 chr4 28778386 28778440 -155510222 + A-rich Low_complexity Low_complexity 3 57 0 713 291 46 12 chr4 28778777 28778998 -155509664 - MIR SINE MIR -1 261 34 408 246 20 116 chr4 28779026 28779225 -155509437 + MIR3 SINE MIR 19 198 -10 385 320 79 63 chr4 28779234 28779628 -155509034 - L2 LINE L2 0 3313 2914 4202 161 26 20 chr4 28780172 28780907 -155507755 + L1MB3 LINE L1 5444 6182 -1 241 221 44 29 chr4 28781080 28781148 -155507514 + L2 LINE L2 2985 3053 -219 28 0 0 26 chr4 28781788 28781809 -155506853 + AT_rich Low_complexity Low_complexity 1 22 -16 2438 75 0 7 chr4 28781809 28782114 -155506548 + AluY SINE Alu 1 303 -8 28 0 0 26 chr4 28782114 28782131 -155506531 + AT_rich Low_complexity Low_complexity 22 38 0 429 297 29 35 chr4 28782167 28782341 -155506321 - MIR SINE MIR -63 145 7 421 316 43 7 chr4 28782913 28783052 -155505610 - MIR SINE MIR -118 144 1 184 91 30 0 chr4 28783398 28783431 -155505231 - L2 LINE L2 0 3313 3280 400 311 59 10 chr4 28783753 28783959 -155504703 + MIR SINE MIR 36 251 -11 324 248 178 51 chr4 28785193 28785407 -155503255 + L2 LINE L2 3007 3247 -25 2434 90 0 0 chr4 28785422 28785721 -155502941 + AluSq SINE Alu 1 299 -14 399 127 0 0 chr4 28786182 28786245 -155502417 + (CA)n Simple_repeat Simple_repeat 1 63 0 494 278 139 19 chr4 28786712 28786921 -155501741 + MIR SINE MIR 11 244 -18 327 279 189 46 chr4 28788072 28788352 -155500310 + HAL1 LINE L1 981 1300 -1207 286 213 74 65 chr4 28788825 28788933 -155499729 - MIR SINE MIR -139 123 15 181 208 181 0 chr4 28788976 28789048 -155499614 + MIR SINE MIR 140 224 -38 336 152 48 9 chr4 28790451 28790556 -155498106 + (TA)n Simple_repeat Simple_repeat 2 110 0 327 146 0 0 chr4 28790780 28790835 -155497827 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 225 178 0 0 chr4 28790839 28790884 -155497778 - LTR66 LTR ERVL -171 439 395 233 108 0 242 chr4 28790889 28791009 -155497653 - L1MC4 LINE L1 -1339 6703 6613 * 267 290 0 11 chr4 28790917 28791010 -155497652 + L1MC4 LINE L1 6614 6705 -1337 728 169 7 0 chr4 28791010 28791146 -155497516 + MER53 DNA DNA 20 156 -33 271 227 248 21 chr4 28791509 28791650 -155497012 - MIR SINE MIR -32 230 58 287 268 108 76 chr4 28791994 28792151 -155496511 - MIR SINE MIR -95 167 6 943 273 56 4 chr4 28793045 28793294 -155495368 + MIR SINE MIR 1 262 0 238 118 0 0 chr4 28793340 28793374 -155495288 + MLT1I LTR MaLR 370 403 -6 26 0 0 0 chr4 28794119 28794145 -155494517 + AT_rich Low_complexity Low_complexity 1 26 0 387 0 0 0 chr4 28795115 28795158 -155493504 + (T)n Simple_repeat Simple_repeat 1 43 0 853 269 68 64 chr4 28795429 28795868 -155492794 + MLT1J LTR MaLR 17 457 -54 265 329 0 0 chr4 28796195 28796277 -155492385 - MIR SINE MIR -86 176 95 425 188 0 0 chr4 28796484 28796569 -155492093 - L1MA7 LINE L1 0 6291 6207 223 296 56 74 chr4 28796600 28796708 -155491954 + L2 LINE L2 3164 3269 -3 814 258 50 21 chr4 28799149 28799389 -155489273 - MIR SINE MIR -2 260 14 447 323 8 0 chr4 28799451 28799581 -155489081 + MER94 DNA DNA 3 133 -1 458 252 16 63 chr4 28799698 28799825 -155488837 - L2 LINE L2 -6 3266 3146 228 204 0 0 chr4 28799894 28799948 -155488714 - LTR66 LTR ERVL -159 451 398 * 232 143 0 0 chr4 28799916 28799958 -155488704 + LTR66 LTR ERVL 398 439 -171 424 289 46 23 chr4 28800073 28800259 -155488403 + MIR SINE MIR 2 185 -66 2253 104 3 0 chr4 28800321 28800610 -155488052 + AluSp SINE Alu 2 291 -22 216 345 24 12 chr4 28800924 28801008 -155487654 - MIR SINE MIR -72 136 52 935 264 37 0 chr4 28801350 28801566 -155487096 - MER58A DNA MER1_type 0 224 1 2168 138 0 0 chr4 28802799 28803110 -155485552 + AluSx SINE Alu 1 311 -1 313 319 64 11 chr4 28803585 28803679 -155484983 - MIR SINE MIR -58 150 52 405 341 122 33 chr4 28803847 28804367 -155484295 - L2 LINE L2 -44 3269 2714 1161 123 0 0 chr4 28804381 28804536 -155484126 - FRAM SINE Alu -23 153 1 994 308 87 26 chr4 28804536 28805043 -155483619 - L2 LINE L2 -593 2721 2184 604 239 6 31 chr4 28805071 28805234 -155483428 - L1ME LINE L1 -5865 205 47 1037 259 26 83 chr4 28805320 28805826 -155482836 + L1ME LINE L1 396 872 -5198 2148 43 0 8 chr4 28805876 28806131 -155482531 - AluY SINE Alu 0 311 59 1250 128 0 24 chr4 28806816 28807027 -155481635 - AluY SINE Alu -105 206 1 1865 87 0 21 chr4 28807032 28807274 -155481388 + AluY SINE Alu 53 289 -22 566 246 60 0 chr4 28807300 28807467 -155481195 + L1ME LINE L1 899 1075 -5008 297 274 48 24 chr4 28807485 28807609 -155481053 + MER65B LTR ERV1 1 127 -404 279 247 123 0 chr4 28808055 28808136 -155480526 - L2 LINE L2 -1154 2160 2070 653 264 107 19 chr4 28809282 28809621 -155479041 + L1ME1 LINE L1 5501 5864 -302 1427 208 69 58 chr4 28809860 28810221 -155478441 + MLT1A1 LTR MaLR 1 365 0 403 281 51 66 chr4 28810782 28810978 -155477684 + MER117 DNA MER1_type 1 193 -4 1272 159 27 36 chr4 28811220 28811440 -155477222 + MER20 DNA MER1_type 1 218 -1 464 269 130 6 chr4 28812243 28812420 -155476242 + MIR SINE MIR 45 241 -21 597 178 82 48 chr4 28812644 28812790 -155475872 - MIR SINE MIR -42 220 70 271 260 26 0 chr4 28812889 28812966 -155475696 - L2 LINE L2 -1 3312 3234 360 0 0 0 chr4 28813182 28813222 -155475440 + (A)n Simple_repeat Simple_repeat 1 40 0 272 181 19 124 chr4 28813894 28813999 -155474663 + MIR3 SINE MIR 111 204 -4 207 0 0 0 chr4 28814617 28814640 -155474022 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1632 169 17 17 chr4 28814691 28814993 -155473669 + AluJo SINE Alu 1 302 -10 589 268 38 34 chr4 28818219 28818428 -155470234 - MER63A DNA MER1_type 0 210 1 870 37 0 9 chr4 28818910 28819019 -155469643 + LTR7 LTR ERV1 1 108 -342 11613 91 12 10 chr4 28819121 28820751 -155467911 + HERVH LTR ERV1 1355 2987 -4726 816 145 41 0 chr4 28820745 28820890 -155467772 + HERVH LTR ERV1 3140 3290 -4423 * 950 137 0 0 chr4 28820889 28821028 -155467634 + HERVH LTR ERV1 3500 3638 -4075 * 1224 150 0 1 chr4 28821018 28821379 -155467283 + HERVH LTR ERV1 4744 5149 -2564 1194 118 88 10 chr4 28821380 28821584 -155467078 + HERVH LTR ERV1 5600 5819 -1894 * 2620 71 48 13 chr4 28821582 28821961 -155466701 + HERVH LTR ERV1 7322 7713 0 1806 100 43 9 chr4 28821961 28822349 -155466313 + LTR7 LTR ERV1 1 448 -2 340 325 59 13 chr4 28823462 28823739 -155464923 + L2 LINE L2 2743 3031 -241 196 295 164 0 chr4 28823863 28823924 -155464738 + L2 LINE L2 3212 3282 -31 561 303 87 30 chr4 28824179 28824268 -155464394 - MIR SINE MIR -10 252 169 1062 240 90 90 chr4 28824268 28824823 -155463839 + MLT1H1 LTR MaLR 1 555 0 561 303 87 30 chr4 28824823 28824964 -155463698 - MIR SINE MIR -93 169 9 799 296 103 5 chr4 28825361 28825729 -155462933 + L2 LINE L2 2910 3313 0 23 0 0 0 chr4 28825899 28825922 -155462740 + AT_rich Low_complexity Low_complexity 1 23 0 1860 60 0 0 chr4 28825922 28826139 -155462523 - L1PA8 LINE L1 -17 6155 5939 202 27 0 54 chr4 28826248 28826285 -155462377 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 932 155 0 0 chr4 28826287 28826416 -155462246 - FLAM_C SINE Alu -4 129 1 252 344 0 11 chr4 28826558 28826648 -155462014 + L2 LINE L2 3224 3312 -1 246 311 30 19 chr4 28826886 28827015 -155461647 + MIR SINE MIR 20 150 -62 2179 117 0 7 chr4 28827098 28827397 -155461265 + AluSx SINE Alu 1 297 -15 26 64 0 0 chr4 28827461 28827508 -155461154 + AT_rich Low_complexity Low_complexity 1 47 0 2040 141 0 3 chr4 28827790 28828103 -155460559 + AluSx SINE Alu 1 312 0 613 171 31 194 chr4 28828140 28828362 -155460300 - MER5A DNA MER1_type 0 189 4 266 192 269 13 chr4 28828372 28828450 -155460212 - MIR SINE MIR -55 207 110 222 325 0 24 chr4 28828461 28828544 -155460118 + MIR SINE MIR 54 134 -128 198 280 0 0 chr4 28829270 28829320 -155459342 + MIR SINE MIR 201 250 -12 277 335 114 44 chr4 28829339 28829566 -155459096 - MIR SINE MIR -19 243 1 23 0 0 0 chr4 28830025 28830048 -155458614 + AT_rich Low_complexity Low_complexity 1 23 0 268 250 188 46 chr4 28830552 28830920 -155457742 - L1ME4a LINE L1 -3 6118 5699 762 169 0 24 chr4 28830926 28831050 -155457612 + FLAM_A SINE Alu 7 127 -15 21 0 0 0 chr4 28831050 28831071 -155457591 + AT_rich Low_complexity Low_complexity 1 21 0 413 294 85 13 chr4 28831071 28831224 -155457438 - L1ME4a LINE L1 -404 5717 5554 373 280 88 57 chr4 28831461 28831654 -155457008 - L2 LINE L2 0 3272 3074 353 257 62 69 chr4 28831763 28831907 -155456755 - MIR SINE MIR -57 205 63 1081 198 120 3 chr4 28833048 28833331 -155455331 - L1MB2 LINE L1 -8 6163 5848 189 0 0 0 chr4 28833331 28833352 -155455310 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 207 0 0 0 chr4 28833351 28833374 -155455288 + (TA)n Simple_repeat Simple_repeat 1 23 0 261 0 0 0 chr4 28833481 28833510 -155455152 + (CA)n Simple_repeat Simple_repeat 2 30 0 315 67 0 0 chr4 28833510 28833555 -155455107 - L1MB2 LINE L1 -350 5833 5789 2320 82 3 0 chr4 28833974 28834280 -155454382 - AluY SINE Alu -4 307 1 207 167 0 0 chr4 28835449 28835491 -155453171 + (TA)n Simple_repeat Simple_repeat 1 42 0 631 324 83 25 chr4 28835614 28836012 -155452650 - L2 LINE L2 -1 3312 2892 340 258 108 0 chr4 28836021 28836114 -155452548 + L2 LINE L2 3204 3306 -7 225 355 19 9 chr4 28836134 28836241 -155452421 - L2 LINE L2 -425 2889 2782 213 376 55 9 chr4 28836338 28836447 -155452215 + L2 LINE L2 3154 3267 -5 454 198 4 203 chr4 28836454 28836681 -155451981 - MIR SINE MIR -15 247 66 1059 215 30 116 chr4 28837479 28837875 -155450787 + MLT1A1 LTR MaLR 4 365 0 14258 195 57 9 chr4 28837998 28839749 -155448913 - L1PB1 LINE L1 0 6867 5201 186 71 0 0 chr4 28839749 28839777 -155448885 + (TTTAG)n Simple_repeat Simple_repeat 3 30 0 14258 195 57 9 chr4 28839777 28844465 -155444197 - L1PB1 LINE L1 -1666 5201 105 505 118 26 0 chr4 28844468 28844544 -155444118 - AluS SINE Alu -231 82 5 180 287 356 17 chr4 28844778 28844952 -155443710 - MIR SINE MIR -1 261 29 1679 177 9 58 chr4 28845091 28845241 -155443421 + AluJb SINE Alu 1 128 -184 1455 173 0 4 chr4 28845241 28845490 -155443172 + AluJb SINE Alu 51 298 -14 1679 177 9 58 chr4 28845490 28845667 -155442995 + AluJb SINE Alu 128 312 0 182 121 61 0 chr4 28847090 28847123 -155441539 - L2 LINE L2 -94 3219 3185 212 280 178 8 chr4 28847838 28847956 -155440706 + MIR SINE MIR 120 257 -5 1351 197 85 61 chr4 28848158 28848651 -155440011 - MLT1D LTR MaLR 0 505 1 2332 81 13 3 chr4 28848848 28849155 -155439507 + AluY SINE Alu 1 310 -1 2394 96 0 0 chr4 28850158 28850461 -155438201 + AluSx SINE Alu 1 303 -9 288 354 16 16 chr4 28850963 28851090 -155437572 - MIR SINE MIR -24 238 112 493 283 68 34 chr4 28851188 28851425 -155437237 + LTR16C LTR ERVL 134 378 -113 335 343 10 0 chr4 28851533 28851632 -155437030 - MIR SINE MIR -162 100 1 2174 132 36 36 chr4 28851846 28852209 -155436453 + THE1B LTR MaLR 2 364 0 878 253 71 4 chr4 28852257 28852482 -155436180 - MIR SINE MIR -3 259 20 841 209 84 14 chr4 28852496 28852711 -155435951 - MIR SINE MIR -21 241 12 262 345 195 6 chr4 28852756 28853104 -155435558 - L3 LINE CR1 -203 1374 961 243 345 134 21 chr4 28853337 28853479 -155435183 - L2 LINE L2 -5 3267 3110 1581 282 133 13 chr4 28853484 28853753 -155434909 + L2 LINE L2 2090 2325 -989 1837 200 65 16 chr4 28853753 28854198 -155434464 + MLT1C LTR MaLR 1 467 0 1581 282 133 13 chr4 28854198 28854637 -155434025 + L2 LINE L2 2325 2883 -431 447 287 121 27 chr4 28854666 28854889 -155433773 + L2 LINE L2 3067 3310 -3 203 216 0 59 chr4 28854967 28855018 -155433644 + MIR SINE MIR 123 170 -92 189 196 0 0 chr4 28855718 28855769 -155432893 + CT-rich Low_complexity Low_complexity 1 51 0 405 0 0 0 chr4 28856594 28856639 -155432023 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 233 341 0 0 chr4 28858927 28859018 -155429644 + (TA)n Simple_repeat Simple_repeat 2 92 0 289 337 0 0 chr4 28859024 28859113 -155429549 + MIR SINE MIR 174 262 0 245 288 30 0 chr4 28859129 28859195 -155429467 + L2 LINE L2 3242 3309 -4 * 271 305 3 90 chr4 28859193 28859359 -155429303 - MIR SINE MIR -71 137 4 374 241 7 83 chr4 28861269 28861414 -155427248 - MIR SINE MIR -48 214 81 795 255 43 14 chr4 28861774 28862056 -155426606 - MER113 DNA MER1_type? -122 399 110 284 229 0 48 chr4 28862069 28862152 -155426510 - MER116 DNA Mariner -1 79 1 4117 55 2 2 chr4 28862575 28863100 -155425562 - L1PA8 LINE L1 0 6172 5648 2149 115 0 32 chr4 28863470 28863782 -155424880 + AluSx SINE Alu 1 302 -10 397 283 12 81 chr4 28863967 28864081 -155424581 + MIR3 SINE MIR 46 146 -62 478 244 71 36 chr4 28864081 28864249 -155424413 - MER5B DNA MER1_type 0 178 5 397 283 12 81 chr4 28864249 28864307 -155424355 + MIR3 SINE MIR 146 206 -2 579 235 117 31 chr4 28864473 28864635 -155424027 + MIR SINE MIR 15 190 -72 363 285 42 18 chr4 28865236 28865401 -155423261 + L1ME4a LINE L1 5953 6121 0 1434 98 5 0 chr4 28866181 28866385 -155422277 + L1PA13 LINE L1 5958 6162 -1 1934 207 14 7 chr4 28866385 28866815 -155421847 + L1M4 LINE L1 5324 5756 -422 429 237 123 9 chr4 28867353 28867467 -155421195 - L2 LINE L2 -4 3309 3183 2121 127 0 0 chr4 28869866 28870176 -155418486 + AluSx SINE Alu 1 310 0 529 248 128 78 chr4 28870890 28871035 -155417627 + L1ME4a LINE L1 5689 5825 -296 2056 105 46 8 chr4 28871035 28871386 -155417276 + L1MA4A LINE L1 5940 6303 0 529 248 128 78 chr4 28871386 28871590 -155417072 + L1ME4a LINE L1 5825 6068 -53 2223 97 10 0 chr4 28871590 28871888 -155416774 - AluSq SINE Alu -12 301 1 529 248 128 78 chr4 28871888 28871936 -155416726 + L1ME4a LINE L1 6068 6112 -9 556 336 162 42 chr4 28872025 28873136 -155415526 - L2 LINE L2 -202 3070 1824 28802 110 9 15 chr4 28874544 28879255 -155409407 + L1P3 LINE L1 748 5506 -955 1985 118 7 43 chr4 28879255 28879559 -155409103 + AluSc SINE Alu 1 293 -16 1279 60 0 22 chr4 28879559 28879579 -155409083 + (GAAA)n Simple_repeat Simple_repeat 1 199 0 1279 60 0 22 chr4 28879579 28879763 -155408899 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6930 46 24 0 chr4 28879835 28880783 -155407879 + L1PA7 LINE L1 5176 6144 -10 28 29 0 0 chr4 28880927 28880962 -155407700 + AT_rich Low_complexity Low_complexity 1 35 0 738 279 62 12 chr4 28881169 28881409 -155407253 + MIR SINE MIR 11 262 0 218 300 89 0 chr4 28881535 28881625 -155407037 - MIR SINE MIR -56 206 109 23 33 0 0 chr4 28882175 28882205 -155406457 + AT_rich Low_complexity Low_complexity 1 30 0 254 191 36 91 chr4 28882451 28882561 -155406101 - L1ME4a LINE L1 -209 5912 5809 315 0 0 0 chr4 28884825 28884860 -155403802 + (CA)n Simple_repeat Simple_repeat 1 35 0 196 313 30 20 chr4 28885382 28885481 -155403181 - L2 LINE L2 -263 3009 2910 332 228 53 0 chr4 28885514 28885628 -155403034 + MER113 DNA MER1_type? 30 149 -372 859 164 0 0 chr4 28885649 28885777 -155402885 + FLAM_C SINE Alu 2 129 -14 474 318 89 4 chr4 28885886 28886122 -155402540 + MER113 DNA MER1_type? 262 517 -4 1025 153 11 23 chr4 28886515 28886691 -155401971 - MER104 DNA MER2_type -4 176 3 375 291 87 8 chr4 28886832 28886959 -155401703 + MIR SINE MIR 1 137 -125 392 289 35 35 chr4 28887505 28887695 -155400967 - MIR SINE MIR -69 139 2 304 302 7 50 chr4 28888849 28888988 -155399674 + L1ME LINE L1 5299 5431 -731 1271 224 58 52 chr4 28889183 28889513 -155399149 + MLT1J LTR MaLR 22 353 -158 339 266 13 76 chr4 28889730 28889888 -155398774 + MLT1F LTR MaLR 40 187 -355 1434 269 87 78 chr4 28890209 28891147 -155397515 - L1MEd LINE L1 -5169 950 4 23 0 0 0 chr4 28891453 28891476 -155397186 + AT_rich Low_complexity Low_complexity 1 23 0 2199 110 14 3 chr4 28891603 28891895 -155396767 - AluSx SINE Alu -15 297 3 3052 107 18 31 chr4 28891959 28892409 -155396253 + MLT2A1 LTR ERVL 1 444 0 201 228 88 0 chr4 28892518 28892575 -155396087 + MIR SINE MIR 176 237 -25 238 208 0 0 chr4 28892583 28892631 -155396031 + (ATG)n Simple_repeat Simple_repeat 2 49 0 2672 49 0 0 chr4 28892822 28893129 -155395533 - AluY SINE Alu -4 307 1 358 282 81 20 chr4 28893349 28893498 -155395164 - MIR SINE MIR -1 261 104 545 242 79 24 chr4 28893528 28893693 -155394969 + MIR SINE MIR 89 262 0 466 209 181 0 chr4 28893685 28893790 -155394872 - MIR SINE MIR -107 155 32 * 476 291 74 30 chr4 28894196 28894426 -155394236 - MIR SINE MIR 0 262 23 235 255 0 0 chr4 28894623 28894670 -155393992 - L2 LINE L2 -18 3254 3208 * 468 317 0 0 chr4 28894666 28894789 -155393873 + L2 LINE L2 3150 3272 0 451 329 66 0 chr4 28894802 28894988 -155393674 - MIR SINE MIR -64 198 3 185 330 230 0 chr4 28895283 28895383 -155393279 - L3 LINE CR1 -2 1575 1453 2221 99 0 3 chr4 28895793 28896115 -155392547 + AluSg SINE Alu 1 321 0 336 167 19 0 chr4 28896528 28896582 -155392080 - Charlie8 DNA MER1_type -2238 179 125 350 338 39 45 chr4 28896719 28896899 -155391763 + MIR SINE MIR 25 196 -65 207 157 39 0 chr4 28896936 28896987 -155391675 + A-rich Low_complexity Low_complexity 2 54 0 400 216 0 16 chr4 28897670 28897795 -155390867 + CT-rich Low_complexity Low_complexity 2 124 0 652 252 0 0 chr4 28899531 28899670 -155388992 + MIR SINE MIR 112 250 -12 642 245 80 51 chr4 28899791 28900239 -155388423 + L1MC5 LINE L1 7259 7638 -323 793 281 160 41 chr4 28900242 28900730 -155387932 + MLT1F1 LTR MaLR 14 559 -8 464 254 78 19 chr4 28900741 28900946 -155387716 + L1MC5 LINE L1 7709 7925 -36 286 304 78 9 chr4 28901130 28901245 -155387417 + MIR SINE MIR 17 139 -123 192 257 0 0 chr4 28902095 28902165 -155386497 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 27 0 0 0 chr4 28902285 28902312 -155386350 + AT_rich Low_complexity Low_complexity 1 27 0 2260 145 33 34 chr4 28902315 28902834 -155385828 + MLT2A2 LTR ERVL 1 517 -37 335 117 67 192 chr4 28902844 28902964 -155385698 + MER103 DNA DNA 15 119 -47 5810 123 13 2 chr4 28903157 28903998 -155384664 - L1MC1 LINE L1 0 6333 5484 1523 212 17 38 chr4 28904103 28904284 -155384378 + MER58B DNA MER1_type 1 173 -2247 2144 107 7 7 chr4 28904284 28904592 -155384070 - AluSq SINE Alu -5 308 1 1523 212 17 38 chr4 28904592 28904755 -155383907 + MER58B DNA MER1_type 173 338 -3 509 291 128 26 chr4 28905650 28905877 -155382785 - MIR SINE MIR -12 250 1 363 210 340 0 chr4 28906249 28906349 -155382313 - MER94 DNA DNA 0 134 1 549 246 34 17 chr4 28906352 28906527 -155382135 - MER5B DNA MER1_type 0 178 1 534 178 149 136 chr4 28906609 28906719 -155381943 + MLT1J LTR MaLR 214 321 -190 2230 129 7 0 chr4 28906719 28907028 -155381634 + AluSx SINE Alu 1 311 -1 534 178 149 136 chr4 28907028 28907159 -155381503 + MLT1J LTR MaLR 321 458 -53 226 381 79 62 chr4 28907624 28908078 -155380584 - L2 LINE L2 -2 3270 2809 2284 98 3 0 chr4 28908560 28908855 -155379807 + AluSx SINE Alu 1 296 -16 252 250 0 26 chr4 28908915 28908991 -155379671 + GA-rich Low_complexity Low_complexity 3 76 0 537 317 40 18 chr4 28909339 28909577 -155379085 + L1ME4a LINE L1 5653 5898 -223 37 69 0 0 chr4 28909809 28909881 -155378781 + AT_rich Low_complexity Low_complexity 1 72 0 195 278 96 35 chr4 28909962 28910077 -155378585 + MIR SINE MIR 88 209 -53 315 303 10 40 chr4 28910212 28910311 -155378351 - L2 LINE L2 -12 3260 3165 187 312 153 19 chr4 28910393 28910550 -155378112 + MIR SINE MIR 83 260 -2 270 0 0 0 chr4 28911164 28911194 -155377468 + (TG)n Simple_repeat Simple_repeat 2 31 0 1989 200 19 6 chr4 28912585 28912945 -155375717 - MLT1A1 LTR MaLR 0 365 1 715 150 20 34 chr4 28912966 28913113 -155375549 + MER53 DNA DNA 15 159 -30 2432 50 7 3 chr4 28913125 28913422 -155375240 - AluY SINE Alu -13 298 1 576 245 39 52 chr4 28913632 28913865 -155374797 - MER113 DNA MER1_type? -288 233 4 1303 175 8 51 chr4 28913876 28914110 -155374552 + MER58A DNA MER1_type 1 224 0 21 0 0 0 chr4 28914777 28914798 -155373864 + AT_rich Low_complexity Low_complexity 1 21 0 2650 45 0 0 chr4 28916075 28916386 -155372276 - AluY SINE Alu 0 311 1 22 0 0 0 chr4 28917190 28917212 -155371450 + AT_rich Low_complexity Low_complexity 1 22 0 224 284 74 53 chr4 28918785 28918880 -155369782 - MIR SINE MIR -70 192 96 1530 172 4 0 chr4 28919083 28919339 -155369323 - AluJb SINE Alu -3 309 53 691 160 141 113 chr4 28919472 28919640 -155369022 + MER20 DNA MER1_type 1 178 -41 1725 151 10 51 chr4 28919640 28919952 -155368710 + AluJo SINE Alu 1 299 -13 691 160 141 113 chr4 28919952 28919996 -155368666 + MER20 DNA MER1_type 178 219 0 230 211 14 42 chr4 28920148 28920219 -155368443 + CT-rich Low_complexity Low_complexity 2 70 0 232 331 65 24 chr4 28920266 28920435 -155368227 - MIR SINE MIR -66 196 21 232 297 144 82 chr4 28921118 28921463 -155367199 - L2 LINE L2 -17 3255 2886 2262 104 10 0 chr4 28921463 28921762 -155366900 - AluSx SINE Alu -10 302 1 675 254 77 9 chr4 28921921 28922063 -155366599 + MER112 DNA MER1_type 8 172 -88 2256 56 3 14 chr4 28922063 28922350 -155366312 - AluY SINE Alu -5 306 23 675 254 77 9 chr4 28922350 28922427 -155366235 + MER112 DNA MER1_type 172 242 -18 2191 107 0 22 chr4 28922647 28922966 -155365696 + AluSx SINE Alu 1 312 0 411 370 40 32 chr4 28923061 28923464 -155365198 - L2 LINE L2 -862 2452 2047 346 208 13 26 chr4 28923555 28923632 -155365030 + L2 LINE L2 3238 3313 0 255 302 228 31 chr4 28923650 28924101 -155364561 - L2 LINE L2 -1294 2020 1481 535 261 149 64 chr4 28927136 28927511 -155361151 + L2 LINE L2 2866 3272 0 418 309 11 25 chr4 28927509 28927694 -155360968 - MIR SINE MIR -65 143 17 * 993 200 68 9 chr4 28927953 28928173 -155360489 + MER96B DNA MER1_type? 5 237 -180 248 320 172 36 chr4 28929132 28929406 -155359256 - L2 LINE L2 -246 3067 2832 396 0 0 0 chr4 28929406 28929450 -155359212 + (TTG)n Simple_repeat Simple_repeat 2 45 0 248 320 172 36 chr4 28929450 28929471 -155359191 - L2 LINE L2 -481 2832 2815 1452 104 92 126 chr4 28929471 28929788 -155358874 - AluSg1 SINE Alu -3 306 1 248 320 172 36 chr4 28929788 28930103 -155358559 - L2 LINE L2 -498 2815 2371 280 138 181 11 chr4 28930763 28930857 -155357805 - Charlie7 DNA MER1_type -69 2543 2434 231 158 0 0 chr4 28932091 28932129 -155356533 + L2 LINE L2 3268 3305 -8 2067 145 7 0 chr4 28932331 28932641 -155356021 + AluSx SINE Alu 1 312 0 436 194 84 105 chr4 28932652 28932843 -155355819 + Charlie8 DNA MER1_type 90 276 -2141 438 151 66 13 chr4 28933462 28933614 -155355048 + GA-rich Low_complexity Low_complexity 3 162 0 26 0 0 0 chr4 28935066 28935092 -155353570 + AT_rich Low_complexity Low_complexity 1 26 0 2170 115 0 16 chr4 28935353 28935665 -155352997 - AluSg SINE Alu -3 307 1 1806 134 29 11 chr4 28935837 28936144 -155352518 - AluSx SINE Alu 0 312 1 34 0 0 0 chr4 28936247 28936281 -155352381 + AT_rich Low_complexity Low_complexity 1 34 0 1839 151 26 3 chr4 28936589 28936894 -155351768 + AluJb SINE Alu 1 312 0 2120 131 7 0 chr4 28937597 28937903 -155350759 + AluSx SINE Alu 1 308 -4 1467 117 15 38 chr4 28938016 28938280 -155350382 - L1M3 LINE L1 -814 5520 5263 2274 95 7 10 chr4 28938403 28938709 -155349953 - AluSx SINE Alu -5 307 3 2739 182 104 34 chr4 28989856 28990862 -155297800 - LTR12 LTR ERV1 -193 2245 26 535 94 0 0 chr4 28990862 28990926 -155297736 + AluSp SINE Alu 147 210 -103 226 189 94 0 chr4 28991360 28991413 -155297249 - MER112 DNA MER1_type -185 75 18 2110 121 0 32 chr4 28991424 28991739 -155296923 + AluSx SINE Alu 1 305 -7 1732 104 0 21 chr4 28992147 28992388 -155296274 + AluSg/x SINE Alu 70 305 -7 2294 84 3 10 chr4 28994533 28994829 -155293833 + AluSp SINE Alu 1 294 -19 1154 130 97 0 chr4 28994934 28995119 -155293543 - AluJb SINE Alu -109 203 1 901 275 89 48 chr4 28995421 28995808 -155292854 + L2 LINE L2 2182 2589 -725 2152 189 29 0 chr4 28995808 28996157 -155292505 - MLT1A1 LTR MaLR -4 361 3 901 275 89 48 chr4 28996157 28996183 -155292479 + L2 LINE L2 2589 2612 -702 654 148 0 0 chr4 28996285 28996386 -155292276 + AluSp/q SINE Alu 210 310 -3 338 291 59 35 chr4 28996453 28996656 -155292006 + L1MC4a LINE L1 5191 5398 -748 241 338 20 27 chr4 28996679 28996827 -155291835 + L1MC4a LINE L1 5449 5595 -2213 400 237 51 74 chr4 28996876 28996961 -155291701 + L1MC4a LINE L1 5701 5786 -2022 1797 222 37 6 chr4 28996961 28997313 -155291349 + MLT1A1 LTR MaLR 3 365 0 400 237 51 74 chr4 28997313 28997442 -155291220 + L1MC4a LINE L1 5786 5910 -1898 2210 126 0 0 chr4 28997617 28997919 -155290743 - AluSx SINE Alu -6 306 5 406 263 0 0 chr4 28998065 28998160 -155290502 - MER96B DNA MER1_type? 0 417 323 800 159 36 7 chr4 28998165 28998303 -155290359 - L1MC1 LINE L1 0 6333 6192 1565 142 19 15 chr4 28998306 28998566 -155290096 + MER1B DNA MER1_type 1 261 -78 315 115 39 0 chr4 28998587 28998639 -155290023 - L1MC1 LINE L1 -137 6196 6143 2521 59 10 3 chr4 28999848 29000154 -155288508 + AluY SINE Alu 1 308 -3 527 249 79 32 chr4 29000159 29000348 -155288314 - L1ME LINE L1 -309 5812 5615 1948 134 7 29 chr4 29000359 29000665 -155287997 + AluSx SINE Alu 2 300 -12 2167 82 0 0 chr4 29000808 29001078 -155287584 - AluSc SINE Alu -39 270 1 629 122 31 0 chr4 29001081 29001179 -155287483 - L1MC1 LINE L1 -191 6142 6042 493 313 79 28 chr4 29001181 29001395 -155287267 - HsTC2 DNA Tc2 -1197 701 477 295 253 13 0 chr4 29001378 29001453 -155287209 - HsTC2 DNA Tc2 -1598 300 225 * 223 392 54 0 chr4 29001672 29001802 -155286860 + L2 LINE L2 3136 3272 0 844 217 49 10 chr4 29002360 29002563 -155286099 - MLT1H1 LTR MaLR -7 548 338 341 143 0 63 chr4 29002668 29002731 -155285931 - MER103 DNA DNA -77 89 31 1278 237 176 15 chr4 29003469 29003945 -155284717 + MLT1H1 LTR MaLR 3 555 0 182 292 42 14 chr4 29003949 29004021 -155284641 - MIR SINE MIR -14 248 175 840 161 63 0 chr4 29004228 29004371 -155284291 - FRAM SINE Alu -10 156 5 2226 107 20 0 chr4 29004409 29004708 -155283954 + AluSg SINE Alu 1 305 -5 194 353 39 20 chr4 29005018 29005120 -155283542 + L2 LINE L2 3169 3272 0 311 275 48 85 chr4 29005220 29005656 -155283006 + L1M4 LINE L1 4487 4906 -1240 25 0 0 0 chr4 29005890 29005915 -155282747 + AT_rich Low_complexity Low_complexity 1 25 0 964 195 6 23 chr4 29006653 29006827 -155281835 + FAM SINE Alu 4 174 -1 2347 88 0 3 chr4 29006971 29007276 -155281386 - AluSg SINE Alu -6 304 1 385 258 105 21 chr4 29007285 29007475 -155281187 - L1MC5 LINE L1 -77 7884 7679 27 0 0 0 chr4 29009725 29009752 -155278910 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 28 chr4 29010386 29010405 -155278257 + AT_rich Low_complexity Low_complexity 1 20 -15 2349 97 7 0 chr4 29010405 29010714 -155277948 + AluSp SINE Alu 1 311 -2 25 0 0 28 chr4 29010714 29010730 -155277932 + AT_rich Low_complexity Low_complexity 20 35 0 2080 104 0 57 chr4 29010856 29011173 -155277489 + AluSx SINE Alu 1 299 -13 2083 75 0 0 chr4 29011301 29011554 -155277108 + AluY SINE Alu 1 253 -58 911 189 24 24 chr4 29011675 29011844 -155276818 + FRAM SINE Alu 1 161 -15 403 245 93 26 chr4 29011882 29012033 -155276629 + MIR SINE MIR 21 181 -81 1507 238 96 22 chr4 29013490 29013800 -155274862 - MER119 DNA MER1_type -2 581 226 2440 69 3 10 chr4 29013800 29014103 -155274559 - AluY SINE Alu -10 301 1 1507 238 96 22 chr4 29014103 29014242 -155274420 - MER119 DNA MER1_type -357 226 99 2141 145 0 0 chr4 29014959 29015270 -155273392 - AluSq SINE Alu -2 311 1 477 203 59 8 chr4 29015961 29016079 -155272583 - L2 LINE L2 0 3313 3190 1927 137 3 58 chr4 29016141 29016469 -155272193 + AluSx SINE Alu 1 310 -2 588 229 86 0 chr4 29016764 29016904 -155271758 + MER96 DNA MER1_type? 24 175 0 343 143 17 12 chr4 29017034 29017104 -155271558 + AluJ/FLAM SINE Alu 1 60 -242 2298 96 3 0 chr4 29018680 29018981 -155269681 - AluSx SINE Alu -10 302 1 2158 130 0 0 chr4 29019509 29019816 -155268846 + AluSg SINE Alu 1 307 -3 404 145 0 13 chr4 29019816 29019892 -155268770 + (GGAA)n Simple_repeat Simple_repeat 1 75 0 417 293 209 5 chr4 29020256 29020471 -155268191 - MIR SINE MIR -2 260 2 191 270 95 32 chr4 29020621 29020684 -155267978 - MIR SINE MIR -187 75 9 815 275 83 45 chr4 29020703 29021004 -155267658 - L2 LINE L2 0 3313 2994 2163 100 4 0 chr4 29021004 29021283 -155267379 + AluSp SINE Alu 24 303 -10 815 275 83 45 chr4 29021283 29021356 -155267306 - L2 LINE L2 -319 2994 2925 545 238 169 43 chr4 29021757 29021988 -155266674 + LTR16A LTR ERVL 57 316 -134 * 1071 253 130 93 chr4 29021985 29022546 -155266116 - MER21B LTR ERV1 -149 714 133 466 305 26 13 chr4 29022809 29022960 -155265702 + LTR16A LTR ERVL 292 444 -6 523 171 191 26 chr4 29022967 29023119 -155265543 + HERV16 LTR ERVL 2 178 -4818 2091 115 24 0 chr4 29023261 29023549 -155265113 - AluSx SINE Alu -17 295 1 358 300 7 47 chr4 29024918 29025068 -155263594 + MIR SINE MIR 36 179 -83 486 268 70 6 chr4 29025232 29025392 -155263270 + MIR SINE MIR 19 189 -62 2328 82 7 0 chr4 29026671 29026965 -155261697 - AluSg SINE Alu -14 296 1 457 248 57 28 chr4 29026983 29027124 -155261538 + MIR SINE MIR 7 151 -111 272 211 14 14 chr4 29027333 29027404 -155261258 + (CACG)n Simple_repeat Simple_repeat 3 73 0 331 286 171 88 chr4 29027624 29028179 -155260483 - L1M2 LINE L1 -5532 1317 717 180 111 0 0 chr4 29031077 29031104 -155257558 + (GGAGAA)n Simple_repeat Simple_repeat 2 28 0 254 185 93 0 chr4 29031929 29031983 -155256679 - L1MC/D LINE L1 -2020 5788 5730 323 271 101 0 chr4 29031987 29032126 -155256536 - L1MC/D LINE L1 -488 5633 5523 714 271 55 6 chr4 29033499 29033680 -155254982 + HERV16 LTR ERVL 535 724 -4272 2909 88 3 3 chr4 29033994 29034358 -155254304 + THE1B LTR MaLR 1 364 0 2027 298 30 35 chr4 29034391 29034459 -155254203 + HERV16 LTR ERVL 848 915 -4081 2531 79 3 0 chr4 29034459 29034764 -155253898 - AluSp SINE Alu -7 306 1 2027 298 30 35 chr4 29034764 29036052 -155252610 + HERV16 LTR ERVL 915 2269 -2727 3569 254 92 47 chr4 29036071 29036721 -155251941 + L1MCa LINE L1 1 620 -5944 1788 132 9 69 chr4 29036721 29037039 -155251623 + AluJb SINE Alu 1 299 -13 3569 254 92 47 chr4 29037039 29037879 -155250783 + L1MCa LINE L1 620 1420 -5144 743 169 0 70 chr4 29037879 29038021 -155250641 + FLAM_C SINE Alu 2 133 0 3569 254 92 47 chr4 29038021 29038543 -155250119 + L1MCa LINE L1 1420 2354 -4210 5604 171 74 20 chr4 29038554 29038868 -155249794 + L1M4c LINE L1 29 325 -6059 1882 123 49 3 chr4 29038868 29039153 -155249509 - AluSx SINE Alu -14 298 1 5604 171 74 20 chr4 29039153 29039987 -155248675 + L1M4c LINE L1 325 1239 -5145 389 322 55 30 chr4 29039987 29040189 -155248473 + PABL_B LTR ERV1 1 207 -460 609 191 15 44 chr4 29040235 29040371 -155248291 + AluJ SINE Alu 2 133 -169 1182 92 61 0 chr4 29040388 29040552 -155248110 - LTR12 LTR ERV1 0 714 541 465 190 35 17 chr4 29040652 29040826 -155247836 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 1604 196 3 7 chr4 29040922 29041213 -155247449 - AluJo SINE Alu -22 290 1 660 120 0 0 chr4 29041375 29041467 -155247195 + AluJb SINE Alu 42 133 -179 22 0 0 0 chr4 29041467 29041489 -155247173 + AT_rich Low_complexity Low_complexity 1 22 0 384 22 0 0 chr4 29041489 29041534 -155247128 + (CA)n Simple_repeat Simple_repeat 2 46 0 232 129 0 0 chr4 29041534 29041565 -155247097 + AluJb SINE Alu 131 161 -142 243 0 0 0 chr4 29041565 29041592 -155247070 + (CA)n Simple_repeat Simple_repeat 2 28 0 1093 158 0 0 chr4 29041592 29041750 -155246912 + AluJb SINE Alu 131 288 -24 450 253 20 143 chr4 29042203 29042293 -155246369 - MIR SINE MIR -31 231 186 1924 118 37 0 chr4 29042293 29042563 -155246099 - AluSx SINE Alu -26 286 7 450 253 20 143 chr4 29042563 29042697 -155245965 - MIR SINE MIR -76 186 37 194 299 131 56 chr4 29042751 29042901 -155245761 + L3 LINE CR1 1325 1497 -80 467 275 115 95 chr4 29042901 29043447 -155245215 + LTR67 LTR ERVL 1 557 0 194 299 131 56 chr4 29043447 29043510 -155245152 + L3 LINE CR1 1497 1554 -23 258 168 0 0 chr4 29043627 29043679 -155244983 - MLT2D LTR ERVL -2 412 374 404 208 31 9 chr4 29043698 29043925 -155244737 + GA-rich Low_complexity Low_complexity 1 232 0 2102 158 22 25 chr4 29043928 29044295 -155244367 - MLT2D LTR ERVL -48 366 1 2059 148 0 0 chr4 29044577 29044882 -155243780 + AluSx SINE Alu 1 305 -7 2863 108 0 29 chr4 29045167 29045622 -155243040 + HERVH LTR ERV1 2554 2995 -4718 888 136 27 0 chr4 29045601 29045748 -155242914 + HERVH LTR ERV1 3140 3290 -4423 * 3358 122 8 2 chr4 29045738 29046237 -155242425 + HERVH LTR ERV1 3492 3993 -3720 4184 149 6 8 chr4 29046239 29046902 -155241760 + HERVH LTR ERV1 4488 5149 -2564 1406 127 19 0 chr4 29046903 29047116 -155241546 + HERVH LTR ERV1 5600 5816 -1897 2596 72 48 3 chr4 29047117 29047492 -155241170 + HERVH LTR ERV1 7322 7713 0 3631 64 0 7 chr4 29047492 29047943 -155240719 + LTR7 LTR ERV1 1 448 -2 1625 92 0 0 chr4 29047945 29048152 -155240510 - AluSg SINE Alu -103 207 1 414 243 0 27 chr4 29048157 29048268 -155240394 + MLT1K LTR MaLR 463 570 -18 517 130 26 0 chr4 29048270 29048347 -155240315 - AluJ/FRAM SINE Alu -10 302 224 1798 126 0 0 chr4 29048469 29048716 -155239946 - AluSq SINE Alu -66 247 1 204 382 48 10 chr4 29049029 29049236 -155239426 + L3b LINE CR1 1270 1484 -99 1676 149 127 0 chr4 29049690 29049958 -155238704 + AluSx SINE Alu 1 302 0 1694 129 19 8 chr4 29050636 29050900 -155237762 - L1MA5A LINE L1 -8 6289 6023 1374 254 71 88 chr4 29051131 29051606 -155237056 - L2 LINE L2 0 3313 2832 300 27 0 0 chr4 29051606 29051643 -155237019 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2189 90 4 0 chr4 29051646 29051925 -155236737 - AluSp SINE Alu -33 280 1 1374 254 71 88 chr4 29051925 29052460 -155236202 - L2 LINE L2 -483 2830 2311 1270 181 43 47 chr4 29052565 29052864 -155235798 + PABL_B LTR ERV1 370 667 0 972 247 28 48 chr4 29052881 29053172 -155235490 + PABL_B-int LTR ERV1 28 312 -6810 3706 62 18 0 chr4 29053172 29053607 -155235055 + MLT2A1 LTR ERVL 2 444 0 1856 268 64 13 chr4 29053727 29054479 -155234183 + PABL_B-int LTR ERV1 490 1369 -5753 * 7386 232 6 4 chr4 29054477 29055850 -155232812 + PABL_B-int LTR ERV1 2690 4065 -3057 3194 231 40 13 chr4 29055843 29056549 -155232113 + PABL_B-int LTR ERV1 4926 5650 -1472 * 14813 100 25 23 chr4 29056659 29058946 -155229716 - HERVH LTR ERV1 -5421 2292 1 3700 58 0 7 chr4 29058948 29059399 -155229263 - LTR7 LTR ERV1 -2 448 1 801 71 0 0 chr4 29059399 29059498 -155229164 + AluSg/x SINE Alu 202 300 -9 331 256 12 0 chr4 29059503 29059589 -155229073 - MLT1K LTR MaLR -128 460 374 458 305 52 6 chr4 29059685 29059859 -155228803 - MLT1K LTR MaLR -353 235 54 433 237 91 71 chr4 29059861 29059989 -155228673 + MIR SINE MIR 59 194 -68 1978 151 44 41 chr4 29059989 29060353 -155228309 - MLT1A1 LTR MaLR 0 365 1 433 237 91 71 chr4 29060353 29060422 -155228240 + MIR SINE MIR 194 260 -2 872 291 66 40 chr4 29060555 29061511 -155227151 - L1ME LINE L1 -676 5486 4498 * 1468 260 116 61 chr4 29061506 29062565 -155226097 - L1MC5 LINE L1 -286 7675 6554 2417 64 10 0 chr4 29062889 29063186 -155225476 - AluY SINE Alu -11 300 1 266 283 30 24 chr4 29063265 29063431 -155225231 + L1M4 LINE L1 4576 4742 -1404 702 268 47 19 chr4 29063453 29063828 -155224834 + L1MEc LINE L1 177 728 -5835 1501 206 60 33 chr4 29063828 29064192 -155224470 - MLT1A2 LTR MaLR 0 374 1 702 268 47 19 chr4 29064192 29064335 -155224327 + L1MEc LINE L1 728 866 -5697 3191 262 15 15 chr4 29064339 29065080 -155223582 + L1M3c LINE L1 13 753 -5388 1101 217 45 4 chr4 29065082 29065271 -155223391 + L1M3c LINE L1 837 1040 -5101 203 0 0 36 chr4 29065271 29065299 -155223363 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1101 217 45 4 chr4 29065299 29065353 -155223309 + L1M3c LINE L1 1040 1090 -5051 1506 101 19 0 chr4 29065406 29065613 -155223049 + Harlequin LTR ERV1 5883 6093 -803 873 205 103 13 chr4 29065948 29066182 -155222480 - LTR16C LTR ERVL -2 489 235 390 258 77 66 chr4 29067042 29067224 -155221438 - L2 LINE L2 -184 3129 2946 2460 202 66 0 chr4 29067279 29067749 -155220913 - MLT1D LTR MaLR -4 501 1 313 293 29 68 chr4 29068071 29068351 -155220311 + L1MC5 LINE L1 7639 7907 -54 269 199 78 21 chr4 29068435 29068558 -155220104 + L1ME LINE L1 5375 5513 -649 521 208 50 0 chr4 29068979 29069080 -155219582 + MER58A DNA MER1_type 1 106 -1 442 257 25 114 chr4 29069769 29069971 -155218691 - MIR SINE MIR -18 244 61 241 274 164 20 chr4 29069988 29070134 -155218528 - MIR SINE MIR -87 175 9 2206 101 17 0 chr4 29070575 29070873 -155217789 - AluSx SINE Alu -9 303 1 913 263 9 0 chr4 29070978 29071206 -155217456 - L1M1 LINE L1 -4465 3100 2871 1369 231 25 18 chr4 29071250 29071832 -155216830 + L1MEc LINE L1 2025 2614 -3768 * 5725 155 44 47 chr4 29071820 29072170 -155216492 + L1MA9 LINE L1 4266 4616 -1696 1952 142 72 31 chr4 29072170 29072530 -155216132 - THE1C LTR MaLR 0 375 1 5725 155 44 47 chr4 29072530 29073181 -155215481 + L1MA9 LINE L1 4616 5267 -1045 2155 150 32 41 chr4 29073181 29073521 -155215141 + MER1B DNA MER1_type 1 337 0 5725 155 44 47 chr4 29073521 29074565 -155214097 + L1MA9 LINE L1 5267 6311 -1 630 240 41 27 chr4 29074566 29074787 -155213875 + L1MEc LINE L1 811 1034 -5362 2089 137 7 3 chr4 29074882 29075182 -155213480 + AluSx SINE Alu 1 301 -11 476 273 13 32 chr4 29075796 29075950 -155212712 + MER115 DNA AcHobo 1 151 -542 233 278 19 0 chr4 29076019 29076073 -155212589 + Zaphod DNA AcHobo 3977 4031 0 365 293 98 0 chr4 29076239 29076263 -155212399 + L2 LINE L2 1778 1798 -1516 1945 180 26 0 chr4 29076263 29076602 -155212060 + MER7A DNA MER2_type 1 346 0 365 293 98 0 chr4 29076602 29076710 -155211952 + L2 LINE L2 1798 1923 -1391 1534 270 87 26 chr4 29076714 29077206 -155211456 - MLT1E2 LTR MaLR 0 626 105 236 211 367 0 chr4 29077364 29077454 -155211208 - MIR SINE MIR -114 148 26 280 270 63 48 chr4 29077461 29077587 -155211075 + MER5B DNA MER1_type 1 128 -50 23 0 0 0 chr4 29077752 29077775 -155210887 + AT_rich Low_complexity Low_complexity 1 23 0 256 283 83 42 chr4 29078250 29078370 -155210292 + MIR SINE MIR 73 197 -65 833 199 110 22 chr4 29078685 29079030 -155209632 - MLT1I LTR MaLR -3 406 1 314 201 8 149 chr4 29080092 29080192 -155208470 + L1MEd LINE L1 4 82 -6037 2658 25 0 29 chr4 29080192 29080508 -155208154 - AluY SINE Alu -3 308 2 314 201 8 149 chr4 29080508 29080541 -155208121 + L1MEd LINE L1 82 118 -6001 254 239 0 0 chr4 29080643 29080689 -155207973 + L1MEd LINE L1 311 356 -5763 2083 105 11 0 chr4 29081304 29081611 -155207051 + AluSx SINE Alu 1 310 0 268 294 109 8 chr4 29081667 29081786 -155206876 + MIR3 SINE MIR 75 205 -3 1535 168 117 7 chr4 29083562 29083836 -155204826 + 7SLRNA srpRNA srpRNA 2 305 -15 214 156 31 0 chr4 29083836 29083900 -155204762 + (TA)n Simple_repeat Simple_repeat 1 66 0 267 299 175 32 chr4 29084415 29084632 -155204030 - MIR SINE MIR -12 250 3 975 230 106 63 chr4 29084752 29084785 -155203877 - L1MC4a LINE L1 -1972 5836 5806 4070 137 73 21 chr4 29084785 29084867 -155203795 - L1PA15 LINE L1 -7 6158 6082 1828 125 17 21 chr4 29084867 29085154 -155203508 - AluSx SINE Alu -6 306 21 4070 137 73 21 chr4 29085154 29085784 -155202878 - L1PA15 LINE L1 -83 6082 5409 975 230 106 63 chr4 29085784 29086224 -155202438 - L1MC4a LINE L1 -2002 5806 5343 288 268 45 36 chr4 29086247 29086359 -155202303 - HsTC2 DNA Tc2 -1781 117 5 260 242 158 17 chr4 29086363 29086483 -155202179 - L1PA15 LINE L1 -801 5345 5209 215 170 21 0 chr4 29086782 29086829 -155201833 + (TA)n Simple_repeat Simple_repeat 2 49 0 717 236 27 0 chr4 29087130 29087278 -155201384 - MER5A DNA MER1_type -1 188 37 204 40 0 0 chr4 29087622 29087647 -155201015 + (T)n Simple_repeat Simple_repeat 1 25 0 1232 216 46 56 chr4 29087648 29088041 -155200621 - MLT1C LTR MaLR -45 422 34 222 333 111 22 chr4 29088107 29088287 -155200375 + MIR3 SINE MIR 6 201 -7 1476 239 75 41 chr4 29088774 29089335 -155199327 + HsTC2c DNA Tc2 104 683 -46 23 54 0 0 chr4 29091871 29091908 -155196754 + AT_rich Low_complexity Low_complexity 1 37 0 293 87 0 0 chr4 29092790 29092836 -155195826 - Alu SINE Alu -5 296 251 5364 135 99 44 chr4 29093034 29093959 -155194703 + Tigger3b DNA MER2_type 2 1006 -2022 2458 74 3 3 chr4 29093959 29094270 -155194392 - AluSp SINE Alu -1 312 2 5364 135 99 44 chr4 29094270 29094510 -155194152 + Tigger3b DNA MER2_type 1006 1231 0 24 53 0 0 chr4 29096590 29096628 -155192034 + AT_rich Low_complexity Low_complexity 1 38 0 1634 191 14 7 chr4 29097900 29098183 -155190479 - AluJb SINE Alu -27 285 1 1333 195 66 35 chr4 29101404 29101826 -155186836 - Tigger7 DNA MER2_type -1980 507 2 28 61 0 0 chr4 29103696 29103745 -155184917 + AT_rich Low_complexity Low_complexity 1 49 0 437 272 129 37 chr4 29105991 29106285 -155182377 + L1ME4a LINE L1 5534 5854 -267 362 301 0 0 chr4 29110253 29110346 -155178316 - MER58 DNA MER1_type -122 93 1 1768 129 10 54 chr4 29110919 29111214 -155177448 + AluJo SINE Alu 1 282 -30 26 0 0 0 chr4 29111237 29111263 -155177399 + AT_rich Low_complexity Low_complexity 1 26 0 201 39 0 0 chr4 29111333 29111359 -155177303 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr4 29112850 29112871 -155175791 + AT_rich Low_complexity Low_complexity 1 21 0 2407 81 0 7 chr4 29114189 29114499 -155174163 - AluY SINE Alu -3 308 1 490 366 148 16 chr4 29114977 29115463 -155173199 - L3 LINE CR1 -98 1479 930 325 226 165 23 chr4 29115954 29115969 -155172693 - L1MA10 LINE L1 -2 6332 6318 640 213 136 6 chr4 29115969 29116138 -155172524 - L1ME1 LINE L1 -5 6161 5971 763 213 124 16 chr4 29116139 29116397 -155172265 - L1ME1 LINE L1 -250 5916 5631 260 53 26 0 chr4 29117570 29117590 -155171072 + (CA)n Simple_repeat Simple_repeat 1 59 0 260 53 26 0 chr4 29117590 29117628 -155171034 + (CA)n Simple_repeat Simple_repeat 1 39 0 257 128 21 0 chr4 29117732 29117779 -155170883 + (CA)n Simple_repeat Simple_repeat 1 48 0 282 56 0 0 chr4 29117845 29117881 -155170781 + (CGG)n Simple_repeat Simple_repeat 2 37 0 21 57 0 0 chr4 29118520 29118555 -155170107 + GC_rich Low_complexity Low_complexity 1 35 0 291 177 0 0 chr4 29119163 29119225 -155169437 + (TG)n Simple_repeat Simple_repeat 1 62 0 329 264 42 139 chr4 29119318 29119534 -155169128 + L1M2 LINE L1 818 1012 -5837 435 63 0 0 chr4 29120205 29120268 -155168394 + (TG)n Simple_repeat Simple_repeat 2 64 0 677 196 53 151 chr4 29122232 29122518 -155166144 + PABL_B-int LTR ERV1 4787 5015 0 233 337 30 56 chr4 29122681 29122951 -155165711 - PABL_B LTR ERV1 -401 266 4 657 138 0 0 chr4 29122955 29123064 -155165598 + L1MB3 LINE L1 1233 1341 -5043 * 1791 166 18 21 chr4 29123061 29123536 -155165126 + L1MB3 LINE L1 5373 5851 -568 803 223 87 27 chr4 29123539 29123888 -155164774 - MSTD LTR MaLR 0 396 2 3081 138 16 30 chr4 29123888 29124119 -155164543 + L1MB3 LINE L1 5849 6082 -337 1523 128 0 17 chr4 29124119 29124353 -155164309 + MER30 DNA MER1_type 1 230 0 3081 138 16 30 chr4 29124353 29124692 -155163970 + L1MB3 LINE L1 6082 6411 -8 1948 298 38 47 chr4 29124716 29125476 -155163186 + HERV16 LTR ERVL 2300 3110 -2263 2523 68 0 0 chr4 29125476 29125786 -155162876 - AluY SINE Alu 0 311 2 1948 298 38 47 chr4 29125786 29126141 -155162521 + HERV16 LTR ERVL 3110 3467 -1906 546 302 40 20 chr4 29126281 29126483 -155162179 - MER63A DNA MER1_type -4 206 1 341 267 78 71 chr4 29126654 29126950 -155161712 + HERV16 LTR ERVL 3746 4043 -1721 402 363 0 0 chr4 29127224 29127384 -155161278 + HERV16 LTR ERVL 4671 4830 -824 2066 155 0 0 chr4 29127434 29127743 -155160919 - AluSc SINE Alu 0 309 1 312 252 21 49 chr4 29127848 29127991 -155160671 + HERV16 LTR ERVL 4534 4672 -324 1897 111 36 18 chr4 29128323 29128708 -155159954 + AluSp SINE Alu 1 390 0 1345 284 43 19 chr4 29128753 29129032 -155159630 + LTR16A LTR ERVL 19 313 -137 1915 107 21 7 chr4 29129032 29129312 -155159350 + AluSp SINE Alu 1 284 -29 1345 284 43 19 chr4 29129312 29129454 -155159208 + LTR16A LTR ERVL 313 450 0 2223 124 7 0 chr4 29129539 29129846 -155158816 + AluSx SINE Alu 1 309 -3 675 274 30 25 chr4 29129859 29130056 -155158606 - L2 LINE L2 -2 3311 3114 882 263 72 36 chr4 29130229 29130674 -155157988 - LTR16C LTR ERVL -30 461 1 235 220 34 0 chr4 29130679 29130738 -155157924 - MIR SINE MIR -65 197 137 811 252 49 56 chr4 29130771 29131239 -155157423 + MLT1K LTR MaLR 5 544 -44 345 289 18 35 chr4 29131249 29131363 -155157299 - MIR SINE MIR -150 112 1 2128 124 6 40 chr4 29131660 29132099 -155156563 + AluSx SINE Alu 1 428 0 717 53 0 0 chr4 29132099 29132193 -155156469 + (GGGAA)n Simple_repeat Simple_repeat 1 94 0 666 214 139 75 chr4 29132269 29132550 -155156112 - MLT1K LTR MaLR 0 588 290 249 33 0 0 chr4 29132585 29132615 -155156047 + (TCCC)n Simple_repeat Simple_repeat 3 32 0 559 284 44 78 chr4 29132615 29132911 -155155751 - MLT1K LTR MaLR -302 286 1 23 0 0 0 chr4 29133030 29133053 -155155609 + AT_rich Low_complexity Low_complexity 1 23 0 357 262 156 0 chr4 29133078 29133200 -155155462 - LTR67 LTR ERVL -12 545 405 199 297 102 34 chr4 29133643 29133761 -155154901 + L3 LINE CR1 1055 1180 -397 343 336 132 14 chr4 29133821 29134041 -155154621 + L2 LINE L2 2550 2795 -519 213 267 38 120 chr4 29134126 29134449 -155154213 + L2 LINE L2 2796 3109 -163 417 153 0 0 chr4 29134946 29135018 -155153644 + (TG)n Simple_repeat Simple_repeat 1 72 0 322 299 14 48 chr4 29135779 29135926 -155152736 - MER5A DNA MER1_type -39 150 9 301 288 96 8 chr4 29135946 29136071 -155152591 + MIR SINE MIR 27 162 -100 25 0 0 0 chr4 29136251 29136276 -155152386 + AT_rich Low_complexity Low_complexity 1 25 0 208 250 16 31 chr4 29136327 29136391 -155152271 + GA-rich Low_complexity Low_complexity 2 64 0 1880 148 0 40 chr4 29136405 29136709 -155151953 + AluSx SINE Alu 1 292 -20 2366 84 7 0 chr4 29136710 29137018 -155151644 + AluY SINE Alu 2 311 0 716 262 89 0 chr4 29137191 29137411 -155151251 - MIR SINE MIR 0 262 24 301 304 35 17 chr4 29137443 29137558 -155151104 - L1ME4a LINE L1 -207 5914 5798 294 221 71 22 chr4 29137564 29137692 -155150970 - MIR SINE MIR -107 155 19 257 329 131 47 chr4 29137703 29138001 -155150661 - L2 LINE L2 -23 3290 2968 269 273 186 11 chr4 29138103 29138286 -155150376 + MIR SINE MIR 1 215 -47 1988 127 0 19 chr4 29138379 29138686 -155149976 + AluSx SINE Alu 3 303 -9 247 213 0 0 chr4 29139094 29139141 -155149521 - MIR SINE MIR -111 151 105 217 241 46 46 chr4 29139219 29139306 -155149356 + L2 LINE L2 2950 3036 -236 566 354 13 9 chr4 29139411 29139640 -155149022 + MIR SINE MIR 4 233 -29 286 232 207 12 chr4 29139796 29139878 -155148784 - MIR SINE MIR -109 153 56 23 0 0 0 chr4 29140481 29140504 -155148158 + AT_rich Low_complexity Low_complexity 1 23 0 242 279 16 0 chr4 29140952 29141013 -155147649 + L2 LINE L2 3205 3266 -6 589 305 62 26 chr4 29141057 29141283 -155147379 + MIR SINE MIR 15 248 -14 288 0 0 0 chr4 29192131 29192163 -155096499 + (CA)n Simple_repeat Simple_repeat 2 33 0 484 282 31 18 chr4 29192346 29192509 -155096153 + MIR3 SINE MIR 44 208 0 673 247 58 50 chr4 29193158 29193417 -155095245 - MLT1L LTR MaLR -348 267 7 212 269 19 0 chr4 29193453 29193505 -155095157 + GA-rich Low_complexity Low_complexity 4 56 0 498 336 77 6 chr4 29193505 29193741 -155094921 + MIR SINE MIR 4 254 -8 232 287 99 20 chr4 29194168 29194269 -155094393 - L2 LINE L2 -8 3305 3197 188 222 0 0 chr4 29194399 29194435 -155094227 + L3 LINE CR1 1519 1554 -23 405 0 0 0 chr4 29194620 29194665 -155093997 + (TGAG)n Simple_repeat Simple_repeat 2 46 0 420 256 33 16 chr4 29196123 29196244 -155092418 + L2 LINE L2 3184 3306 -7 2178 109 3 28 chr4 29196369 29196689 -155091973 + AluJb SINE Alu 1 312 0 420 289 47 27 chr4 29196713 29196862 -155091800 - L2 LINE L2 0 3313 3162 1144 226 63 47 chr4 29196993 29197373 -155091289 - MLT1J1 LTR MaLR 0 446 61 601 207 0 9 chr4 29197912 29198023 -155090639 - MER20 DNA MER1_type -1 218 109 1104 206 32 36 chr4 29198033 29198286 -155090376 - THE1C LTR MaLR -50 325 74 581 194 16 48 chr4 29198280 29198404 -155090258 - MER20 DNA MER1_type -99 120 1 * 360 64 0 0 chr4 29199716 29199763 -155088899 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 2173 116 10 0 chr4 29199764 29200074 -155088588 - AluSq SINE Alu 0 313 1 584 268 69 27 chr4 29200193 29200454 -155088208 - L1ME4a LINE L1 -69 6052 5781 559 265 38 27 chr4 29200475 29200660 -155088002 - MIR SINE MIR -27 235 49 570 296 20 5 chr4 29200716 29200912 -155087750 - L1ME4a LINE L1 -347 5774 5576 273 256 50 59 chr4 29201872 29202091 -155086571 - L1MC4 LINE L1 0 8042 7826 1021 217 92 40 chr4 29202115 29202442 -155086220 - L1ME2 LINE L1 -14 6150 5807 350 335 31 6 chr4 29202448 29202609 -155086053 + MLT1L LTR MaLR 451 615 0 552 65 0 0 chr4 29203600 29203677 -155084985 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 2128 144 3 0 chr4 29203698 29204004 -155084658 - AluSx SINE Alu -5 307 1 472 226 66 0 chr4 29204059 29204165 -155084497 - L2 LINE L2 0 3313 3201 711 264 102 25 chr4 29204172 29204456 -155084206 + MLT1G1 LTR MaLR 7 312 -283 530 188 165 18 chr4 29204502 29204672 -155083990 + MLT1G1 LTR MaLR 394 588 -2 825 318 89 25 chr4 29204813 29205273 -155083389 - L2 LINE L2 -260 3053 2558 632 249 143 9 chr4 29205295 29205512 -155083150 - MIR SINE MIR 0 262 17 250 290 37 86 chr4 29205561 29205617 -155083045 - L2 LINE L2 -805 2509 2452 965 129 34 0 chr4 29205617 29205764 -155082898 + L1MA5A LINE L1 6144 6295 -2 250 290 37 86 chr4 29205764 29205869 -155082793 - L2 LINE L2 -862 2452 2356 632 291 69 14 chr4 29205928 29206154 -155082508 - MIR SINE MIR -7 255 14 220 280 0 0 chr4 29206186 29206236 -155082426 + MIR SINE MIR 213 262 0 342 249 230 0 chr4 29206988 29207153 -155081509 - L1ME4a LINE L1 -38 6083 5881 701 264 132 14 chr4 29207359 29207579 -155081083 + MIR SINE MIR 17 262 0 1829 154 0 11 chr4 29207679 29207964 -155080698 + AluJb SINE Alu 1 282 -30 314 314 95 69 chr4 29209155 29209429 -155079233 - L2 LINE L2 -2 3270 2990 521 248 0 129 chr4 29210064 29210274 -155078388 + LTR67 LTR ERVL 3 185 -372 437 239 12 12 chr4 29210293 29210460 -155078202 + CT-rich Low_complexity Low_complexity 3 169 0 217 233 0 0 chr4 29210475 29210518 -155078144 + CT-rich Low_complexity Low_complexity 1 43 0 356 203 0 0 chr4 29210709 29210778 -155077884 - FLAM_A SINE Alu 0 133 65 549 204 99 28 chr4 29210837 29210979 -155077683 - L1MD2 LINE L1 -10 6743 6592 3508 221 49 25 chr4 29210981 29212155 -155076507 - L1MD2 LINE L1 -214 6539 5343 2221 78 0 0 chr4 29212155 29212425 -155076237 - AluSc SINE Alu -6 303 34 3508 221 49 25 chr4 29212425 29212544 -155076118 - L1MD2 LINE L1 -1410 5343 5228 1251 251 36 8 chr4 29212541 29212927 -155075735 - L1MD2 LINE L1 -2781 3759 3363 * 2038 186 14 0 chr4 29212949 29213309 -155075353 + MLT1B LTR MaLR 26 390 0 467 113 0 0 chr4 29213333 29213395 -155075267 - AluS SINE Alu -242 68 7 1499 123 9 0 chr4 29213395 29213606 -155075056 + AluSg/x SINE Alu 85 297 -15 9392 213 87 43 chr4 29213606 29214247 -155074415 - L1MD2 LINE L1 -3300 3240 2629 2189 114 10 0 chr4 29214247 29214544 -155074118 - AluSc SINE Alu -7 302 3 9392 213 87 43 chr4 29214544 29215296 -155073366 - L1MD2 LINE L1 -3911 2629 1912 593 168 72 48 chr4 29215296 29215421 -155073241 + FLAM_C SINE Alu 1 128 -5 9392 213 87 43 chr4 29215421 29216737 -155071925 - L1MD2 LINE L1 -4628 1912 364 279 0 0 0 chr4 29216737 29216768 -155071894 + (TG)n Simple_repeat Simple_repeat 1 31 0 9392 213 87 43 chr4 29216768 29217129 -155071533 - L1MD2 LINE L1 -6176 364 20 279 215 38 13 chr4 29217138 29217217 -155071445 + LTR67 LTR ERVL 477 557 0 3231 132 40 8 chr4 29217308 29217456 -155071206 - L1MA9 LINE L1 0 7272 7130 180 97 0 0 chr4 29217456 29217487 -155071175 + (TG)n Simple_repeat Simple_repeat 2 32 0 3231 132 40 8 chr4 29217487 29217839 -155070823 - L1MA9 LINE L1 -142 7130 6756 297 123 0 62 chr4 29217881 29217946 -155070716 - L1MA9 LINE L1 -1850 5256 5196 3241 240 70 62 chr4 29217949 29219903 -155068759 - L1MA9 LINE L1 -3360 3746 2146 2089 134 0 13 chr4 29219903 29220216 -155068446 - AluSq SINE Alu -3 310 2 3241 240 70 62 chr4 29220216 29221187 -155067475 - L1MA9 LINE L1 -4960 2146 1184 1526 249 21 21 chr4 29221303 29221677 -155066985 + MLT1A2 LTR MaLR 1 374 0 2846 115 38 35 chr4 29222152 29222195 -155066467 - MSTA LTR MaLR 0 428 387 2285 105 20 0 chr4 29222195 29222499 -155066163 + AluSg SINE Alu 1 310 0 2846 115 38 35 chr4 29222499 29222882 -155065780 - MSTA LTR MaLR -41 387 1 1084 252 5 3 chr4 29224646 29224895 -155063767 + MIR SINE MIR 15 257 -5 1866 128 39 0 chr4 29226446 29226727 -155061935 + AluSx SINE Alu 1 292 -20 270 289 82 23 chr4 29226742 29226887 -155061775 - MIR SINE MIR -62 146 10 230 211 14 42 chr4 29227847 29227918 -155060744 + MLT1L LTR MaLR 327 395 -220 22 70 0 0 chr4 29228038 29228081 -155060581 + AT_rich Low_complexity Low_complexity 1 43 0 2434 102 0 0 chr4 29228384 29228697 -155059965 - AluSq SINE Alu 0 313 1 480 283 81 6 chr4 29229351 29229524 -155059138 + MIR SINE MIR 65 250 -12 360 223 112 99 chr4 29229988 29230221 -155058441 + L2 LINE L2 3074 3309 -4 2065 151 0 3 chr4 29230262 29230567 -155058095 - AluJb SINE Alu -8 304 1 917 255 56 40 chr4 29230750 29231052 -155057610 + MLT1I LTR MaLR 95 401 -8 357 150 0 0 chr4 29231203 29231263 -155057399 - FLAM SINE Alu -2 131 72 2197 119 0 0 chr4 29232617 29232920 -155055742 - AluSx SINE Alu -9 303 1 2570 124 2 100 chr4 29233002 29233461 -155055201 + MLT2D LTR ERVL 1 414 0 234 333 56 11 chr4 29233562 29233652 -155055010 - MIR SINE MIR -69 139 46 360 286 163 25 chr4 29235107 29235310 -155053352 + MIR SINE MIR 30 260 -2 1174 205 67 0 chr4 29235494 29235704 -155052958 + MER58A DNA MER1_type 1 224 0 220 253 165 44 chr4 29236296 29236387 -155052275 - L2 LINE L2 -30 3242 3141 525 264 103 94 chr4 29236653 29237069 -155051593 - MER115 DNA AcHobo -245 448 29 2305 101 0 3 chr4 29237240 29237547 -155051115 + AluSg1 SINE Alu 1 306 -3 197 65 32 0 chr4 29237942 29237973 -155050689 + (TG)n Simple_repeat Simple_repeat 1 32 0 2483 236 28 8 chr4 29238834 29239342 -155049320 + LTR53 LTR ERVL 2 519 0 395 286 95 20 chr4 29239345 29239492 -155049170 + MIR SINE MIR 35 192 -70 2293 116 0 0 chr4 29239511 29239813 -155048849 - AluSq SINE Alu -11 302 1 793 268 72 41 chr4 29239813 29240231 -155048431 - L2 LINE L2 -6 3307 2877 2227 128 128 28 chr4 29240247 29240413 -155048249 + MSTA LTR MaLR 1 149 -279 1996 108 0 14 chr4 29240413 29240692 -155047970 + AluY SINE Alu 20 294 -17 2227 128 128 28 chr4 29240692 29240914 -155047748 + MSTA LTR MaLR 149 428 0 6078 158 6 44 chr4 29240916 29242004 -155046658 + MSTA-int LTR MaLR 3 1048 -532 240 83 21 62 chr4 29242005 29242053 -155046609 + MSTA-int LTR MaLR 1535 1580 0 2259 139 131 11 chr4 29242062 29242444 -155046218 + MSTA LTR MaLR 1 428 0 2251 121 3 0 chr4 29242807 29243113 -155045549 - AluSp SINE Alu -6 307 1 417 258 11 108 chr4 29243185 29243371 -155045291 + MIR SINE MIR 44 211 -51 359 215 103 89 chr4 29243644 29244028 -155044634 - L1ME4a LINE L1 -12 6109 5685 864 235 97 5 chr4 29244148 29244344 -155044318 + MER58A DNA MER1_type 1 214 -10 33 73 0 0 chr4 29244442 29244510 -155044152 + AT_rich Low_complexity Low_complexity 1 68 0 1440 183 105 68 chr4 29244832 29244975 -155043687 - Charlie4a DNA MER1_type -1485 476 340 2201 119 60 9 chr4 29244975 29245311 -155043351 + THE1A LTR MaLR 1 353 -2 1440 183 105 68 chr4 29245311 29245625 -155043037 - Charlie4a DNA MER1_type -1621 340 2 503 301 66 48 chr4 29245767 29246041 -155042621 + L1ME LINE L1 5209 5489 -672 1755 180 24 7 chr4 29246041 29246336 -155042326 + AluJb SINE Alu 1 300 -12 503 301 66 48 chr4 29246336 29246567 -155042095 + L1ME LINE L1 5489 5714 -447 3096 194 20 7 chr4 29246820 29247372 -155041290 + MER89 LTR ERV1 1 559 0 2126 107 24 13 chr4 29247564 29247862 -155040800 + AluSq SINE Alu 1 301 -12 407 269 126 47 chr4 29248987 29249288 -155039374 + L2 LINE L2 2988 3312 -1 2015 156 13 50 chr4 29249523 29249763 -155038899 - MLT1A1 LTR MaLR 0 365 143 2554 119 31 19 chr4 29249763 29250123 -155038539 + THE1B LTR MaLR 1 364 0 2015 156 13 50 chr4 29250123 29250261 -155038401 - MLT1A1 LTR MaLR -222 143 1 1017 104 0 0 chr4 29250340 29250474 -155038188 - AluSg/x SINE Alu -21 291 158 2220 111 7 0 chr4 29250895 29251192 -155037470 - AluSq SINE Alu -14 299 1 203 247 140 11 chr4 29251252 29251345 -155037317 - MIR SINE MIR -50 212 108 226 341 62 8 chr4 29252097 29252226 -155036436 + MIR3 SINE MIR 12 147 -61 394 323 79 0 chr4 29252377 29252541 -155036121 + MIR SINE MIR 14 190 -72 334 73 0 0 chr4 29253361 29253402 -155035260 - MLT2C1 LTR ERVL 0 397 357 360 0 0 0 chr4 29253405 29253445 -155035217 + (TG)n Simple_repeat Simple_repeat 2 41 0 3058 101 14 20 chr4 29253446 29253884 -155034778 - MLT2A1 LTR ERVL -8 436 2 201 39 0 0 chr4 29253886 29253912 -155034750 + (TG)n Simple_repeat Simple_repeat 1 26 0 225 0 0 0 chr4 29253912 29253937 -155034725 + (GA)n Simple_repeat Simple_repeat 1 25 0 1619 230 27 66 chr4 29253939 29254422 -155034240 - MLT2B1 LTR ERVL -56 464 1 2327 187 65 16 chr4 29254445 29254888 -155033774 + MLT1C LTR MaLR 3 467 0 673 265 91 16 chr4 29254889 29255142 -155033520 + MLT1L LTR MaLR 340 611 -4 385 319 29 14 chr4 29255615 29255753 -155032909 + L2 LINE L2 2916 3055 -217 244 314 97 24 chr4 29255849 29255973 -155032689 + MIR3 SINE MIR 25 157 -51 288 276 60 26 chr4 29256940 29257056 -155031606 + MER5B DNA MER1_type 1 120 -58 395 339 18 9 chr4 29257056 29257168 -155031494 + L2 LINE L2 3158 3270 -2 324 322 89 7 chr4 29257211 29257357 -155031305 + MIR SINE MIR 96 253 -9 724 248 209 27 chr4 29257429 29257760 -155030902 - MLT1I LTR MaLR 0 409 19 2246 125 0 3 chr4 29257928 29258241 -155030421 - AluSx SINE Alu 0 312 1 1022 266 57 3 chr4 29258278 29258594 -155030068 - L1MB7 LINE L1 -10 6672 6340 861 254 29 25 chr4 29258597 29258841 -155029821 - LTR55 LTR ERV -5 543 299 6713 239 45 30 chr4 29258846 29262098 -155026564 - L1MB7 LINE L1 -1443 5201 524 309 287 84 38 chr4 29262270 29262531 -155026131 - L1MB7 LINE L1 -6257 285 13 425 246 16 16 chr4 29262819 29262945 -155025717 + LTR67 LTR ERVL 432 557 0 739 313 79 63 chr4 29263459 29263964 -155024698 + L3 LINE CR1 859 1371 -206 509 353 60 6 chr4 29264623 29264790 -155023872 - MER91A DNA MER1_type 0 196 21 189 292 112 34 chr4 29264944 29265033 -155023629 + L3 LINE CR1 1370 1465 -112 634 212 192 0 chr4 29265133 29265284 -155023378 - MER5A DNA MER1_type -2 187 8 555 183 242 26 chr4 29265294 29265447 -155023215 - MER5A DNA MER1_type 0 189 4 414 302 48 0 chr4 29265551 29265677 -155022985 - L2 LINE L2 0 3313 3182 497 258 66 13 chr4 29266156 29266345 -155022317 + MIR SINE MIR 4 204 -58 454 326 44 0 chr4 29266711 29266892 -155021770 + L1ME LINE L1 5476 5664 -457 1639 174 0 47 chr4 29267051 29267368 -155021294 + AluJb SINE Alu 1 302 -10 1446 67 114 0 chr4 29267403 29267596 -155021066 - AluY SINE Alu -16 295 81 1049 259 65 45 chr4 29267602 29268092 -155020570 - MLT1G LTR MaLR -76 479 1 281 270 232 27 chr4 29268106 29268369 -155020293 - MLT1H1-int LTR MaLR -30 1705 1028 237 386 74 0 chr4 29268629 29268805 -155019857 - MLT1H1-int LTR MaLR -477 894 706 545 314 18 9 chr4 29269159 29269388 -155019274 - MLT1H1-int LTR MaLR -847 524 294 1506 231 80 76 chr4 29269527 29270078 -155018584 - MLT1H1 LTR MaLR -2 553 1 1941 172 28 46 chr4 29270844 29271239 -155017423 + MLT1B LTR MaLR 1 388 -2 550 207 9 9 chr4 29271244 29271355 -155017307 - L1MC4a LINE L1 -931 6877 6767 372 216 0 0 chr4 29271355 29271429 -155017233 + MLT1D LTR MaLR 1 74 -431 489 279 71 26 chr4 29272432 29272586 -155016076 + MIR SINE MIR 9 169 -93 421 201 15 0 chr4 29275263 29275371 -155013291 + MLT2C2 LTR ERVL 1 72 -342 2168 39 0 16 chr4 29276681 29276939 -155011723 - AluY SINE Alu -13 298 45 1057 214 68 65 chr4 29276975 29277311 -155011351 + MLT2C2 LTR ERVL 59 395 -69 250 149 0 43 chr4 29277270 29277317 -155011345 + MSTD LTR MaLR 288 332 -64 * 220 143 36 18 chr4 29277327 29277383 -155011279 + (CATATA)n Simple_repeat Simple_repeat 1 57 0 226 286 0 22 chr4 29277385 29277476 -155011186 + L1MC4 LINE L1 6614 6702 -1340 * 255 255 0 43 chr4 29277417 29277511 -155011151 - L1MC4 LINE L1 -1339 6703 6614 246 281 73 0 chr4 29277477 29277559 -155011103 + L1MC4 LINE L1 6616 6703 -1339 * 180 176 0 0 chr4 29277560 29277594 -155011068 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 180 152 0 0 chr4 29277615 29277648 -155011014 + (CA)n Simple_repeat Simple_repeat 2 34 0 784 182 7 39 chr4 29277729 29277786 -155010876 - MER5B DNA MER1_type -6 172 115 2165 112 3 0 chr4 29277786 29278106 -155010556 + AluSp SINE Alu 1 321 0 784 182 7 39 chr4 29278106 29278201 -155010461 - MER5B DNA MER1_type -63 115 24 276 236 0 0 chr4 29278202 29278257 -155010405 + Tigger5 DNA MER2_type 1 55 -2268 273 288 0 0 chr4 29278225 29278298 -155010364 + Tigger5 DNA MER2_type 2250 2322 -1 * 244 175 0 0 chr4 29278301 29278341 -155010321 + Tigger5 DNA MER2_type 16 55 -2268 233 245 0 0 chr4 29278310 29278359 -155010303 + Tigger5 DNA MER2_type 2251 2299 -24 * 428 167 26 0 chr4 29278361 29278439 -155010223 + Tigger5 DNA MER2_type 2244 2323 0 886 267 17 31 chr4 29278940 29279137 -155009525 + L1MC4a LINE L1 5655 5848 -1960 590 284 98 16 chr4 29279137 29279331 -155009331 - MER63A DNA MER1_type 0 210 1 886 267 17 31 chr4 29279331 29279425 -155009237 + L1MC4a LINE L1 5848 5942 -1866 2639 185 52 12 chr4 29279446 29279964 -155008698 + L1MB5 LINE L1 5585 6123 -51 1846 154 7 3 chr4 29279964 29280262 -155008400 + AluJb SINE Alu 14 312 0 320 284 103 52 chr4 29280697 29280852 -155007810 + MIR SINE MIR 79 241 -21 436 236 230 6 chr4 29281106 29281280 -155007382 - MIR SINE MIR -13 249 37 438 254 227 22 chr4 29281361 29281546 -155007116 - L3 LINE CR1 -5 1572 1350 676 251 191 53 chr4 29282771 29283189 -155005473 + MLT1H1 LTR MaLR 78 553 -2 1831 209 30 24 chr4 29283244 29283613 -155005049 + MLT1A2 LTR MaLR 2 372 -2 444 261 218 38 chr4 29284688 29285150 -155003512 + MLT1L LTR MaLR 1 604 -11 180 111 0 0 chr4 29285387 29285414 -155003248 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 469 329 84 19 chr4 29286415 29286628 -155002034 + MLT1K LTR MaLR 54 280 -308 425 255 20 10 chr4 29286654 29286756 -155001906 + MLT1K LTR MaLR 486 588 0 249 276 112 37 chr4 29286957 29287091 -155001571 - MIR SINE MIR -17 245 102 595 181 188 0 chr4 29287422 29287560 -155001102 - L1ME1 LINE L1 -5 6161 5998 390 162 0 0 chr4 29287561 29287635 -155001027 + (CA)n Simple_repeat Simple_repeat 2 75 0 234 91 0 0 chr4 29287634 29287667 -155000995 + (TC)n Simple_repeat Simple_repeat 1 33 0 * 225 249 52 88 chr4 29287667 29287860 -155000802 - L1MC2 LINE L1 -316 6028 5843 * 5263 228 57 61 chr4 29287710 29289515 -154999147 - L1ME1 LINE L1 -169 5995 4185 1826 179 0 10 chr4 29289515 29289828 -154998834 - AluJb SINE Alu -2 310 1 5263 228 57 61 chr4 29289828 29289892 -154998770 - L1ME1 LINE L1 -1979 4185 4122 406 0 0 0 chr4 29289892 29289937 -154998725 + (TTTA)n Simple_repeat Simple_repeat 2 84 0 1986 108 29 11 chr4 29289937 29290215 -154998447 - AluSx SINE Alu -29 283 1 5263 228 57 61 chr4 29290215 29291813 -154996849 - L1ME1 LINE L1 -2041 4123 2510 2014 62 12 0 chr4 29291813 29292069 -154996593 - AluY SINE Alu -9 302 44 5263 228 57 61 chr4 29292069 29292392 -154996270 - L1ME1 LINE L1 -3654 2510 2187 2483 138 73 0 chr4 29292519 29292916 -154995746 - MSTB LTR MaLR 0 426 1 248 290 29 0 chr4 29292930 29292999 -154995663 + Charlie8 DNA MER1_type 2347 2417 0 1706 141 9 0 chr4 29293455 29293756 -154994906 - Tigger4(Zombi) DNA MER2_type 0 2731 38 199 312 116 29 chr4 29294585 29294723 -154993939 + MIR3 SINE MIR 31 180 -28 720 311 114 11 chr4 29294821 29295197 -154993465 - MLT1L LTR MaLR 0 615 201 1433 192 34 10 chr4 29295959 29296251 -154992411 - AluJo SINE Alu -13 299 1 492 369 22 9 chr4 29296925 29297147 -154991515 + MIR SINE MIR 3 227 -35 964 141 0 7 chr4 29297262 29297411 -154991251 - FAM SINE Alu -15 170 23 839 274 151 30 chr4 29297460 29297792 -154990870 - MLT1K LTR MaLR -189 399 28 231 324 176 17 chr4 29298429 29298605 -154990057 + L2 LINE L2 3107 3310 -3 387 338 35 10 chr4 29298828 29299029 -154989633 - MIR SINE MIR -1 261 56 183 156 0 0 chr4 29300332 29300364 -154988298 + CT-rich Low_complexity Low_complexity 2 33 0 1627 142 22 53 chr4 29300364 29300682 -154987980 - AluJb SINE Alu -4 308 1 206 237 34 0 chr4 29300795 29300854 -154987808 + L3 LINE CR1 1371 1431 -146 236 306 0 0 chr4 29301117 29301179 -154987483 - MIR SINE MIR -2 260 199 594 300 89 8 chr4 29301185 29301422 -154987240 + MIR SINE MIR 4 259 -3 443 231 7 61 chr4 29301373 29301520 -154987142 - MIR SINE MIR -21 241 103 * 232 378 14 0 chr4 29301593 29301667 -154986995 - MIR SINE MIR -186 76 2 229 333 111 19 chr4 29301818 29301926 -154986736 - MIR SINE MIR -117 145 28 282 139 13 51 chr4 29301960 29302039 -154986623 + CT-rich Low_complexity Low_complexity 4 79 0 378 214 83 0 chr4 29302044 29302128 -154986534 + MER5B DNA MER1_type 88 178 0 406 270 42 98 chr4 29302623 29302838 -154985824 + L2 LINE L2 2954 3156 -116 280 311 59 34 chr4 29302847 29302966 -154985696 - L2 LINE L2 -15 3298 3177 294 309 0 0 chr4 29303222 29303303 -154985359 + L2 LINE L2 3187 3267 -5 204 163 0 0 chr4 29304836 29304879 -154983783 + T-rich Low_complexity Low_complexity 1 43 0 226 293 95 41 chr4 29304990 29305137 -154983525 + MER5A DNA MER1_type 14 168 -21 285 253 0 0 chr4 29306141 29306224 -154982438 + A-rich Low_complexity Low_complexity 1 83 0 476 265 148 35 chr4 29306267 29306497 -154982165 + MIR SINE MIR 5 260 -2 341 326 57 7 chr4 29306534 29306675 -154981987 + L3 LINE CR1 1404 1551 -26 2295 86 13 0 chr4 29308139 29308441 -154980221 + AluSg SINE Alu 1 306 -4 212 289 0 26 chr4 29308898 29308974 -154979688 + GA-rich Low_complexity Low_complexity 1 74 0 571 273 157 73 chr4 29309501 29309967 -154978695 + MLT1L LTR MaLR 111 615 0 223 298 73 40 chr4 29313847 29313971 -154974691 + L2 LINE L2 2718 2845 -469 239 309 29 0 chr4 29314070 29314138 -154974524 - MIR SINE MIR -6 256 187 197 196 370 0 chr4 29314125 29314217 -154974445 + L2 LINE L2 3173 3298 -15 * 991 208 95 52 chr4 29314243 29314570 -154974092 - L1ME3A LINE L1 -13 6157 5817 463 295 80 8 chr4 29314612 29314849 -154973813 + L1MC/D LINE L1 5318 5571 -2237 273 265 15 0 chr4 29314879 29314947 -154973715 + L1MC/D LINE L1 5694 5762 -2046 1819 175 112 48 chr4 29315409 29315519 -154973143 - MLT1D LTR MaLR 0 505 403 2245 100 0 0 chr4 29315519 29315819 -154972843 + AluSx SINE Alu 1 300 -12 1819 175 112 48 chr4 29315819 29316183 -154972479 - MLT1D LTR MaLR -102 403 1 2379 135 22 0 chr4 29316553 29316909 -154971753 - THE1B LTR MaLR 0 364 1 1781 181 26 47 chr4 29316916 29317298 -154971364 + MLT1A2 LTR MaLR 1 374 0 351 0 0 0 chr4 29317418 29317457 -154971205 + (TA)n Simple_repeat Simple_repeat 2 40 0 644 216 130 0 chr4 29318429 29318590 -154970072 + MER5A DNA MER1_type 5 189 0 293 344 36 10 chr4 29318595 29318790 -154969872 + L2 LINE L2 2700 2899 -415 29 28 0 0 chr4 29319987 29320023 -154968639 + AT_rich Low_complexity Low_complexity 1 36 0 1744 136 7 14 chr4 29320023 29320310 -154968352 - AluJo SINE Alu -17 295 11 260 204 182 34 chr4 29321516 29321604 -154967058 - MLT1H LTR MaLR -44 505 405 544 192 160 0 chr4 29321643 29321768 -154966894 + MLT1H LTR MaLR 405 549 0 1748 239 126 10 chr4 29322387 29322873 -154965789 - MLT1F LTR MaLR 0 542 1 360 246 92 80 chr4 29323120 29323254 -154965408 - MIR SINE MIR -67 141 30 2022 119 3 0 chr4 29323254 29323548 -154965114 - AluSx SINE Alu -16 296 2 360 246 92 80 chr4 29323548 29323578 -154965084 - MIR SINE MIR -178 30 2 252 122 0 0 chr4 29324433 29324474 -154964188 + (GGA)n Simple_repeat Simple_repeat 3 43 0 180 111 0 0 chr4 29326374 29326401 -154962261 + (A)n Simple_repeat Simple_repeat 1 27 0 522 254 66 44 chr4 29326732 29326913 -154961749 - MARNA DNA Mariner -86 500 316 220 407 12 0 chr4 29326995 29327081 -154961581 + L2 LINE L2 3186 3272 0 288 333 88 13 chr4 29327088 29327247 -154961415 - MARNA DNA Mariner -373 213 43 520 318 17 22 chr4 29328363 29328542 -154960120 - MIR SINE MIR -6 256 79 317 311 40 66 chr4 29328590 29328741 -154959921 - MIR SINE MIR -114 148 2 390 236 57 36 chr4 29329041 29329181 -154959481 - L2 LINE L2 -8 3264 3122 516 318 107 5 chr4 29329213 29329411 -154959251 - MIR SINE MIR 0 262 45 2400 58 0 0 chr4 29329420 29329714 -154958948 + AluY SINE Alu 1 294 -17 328 326 81 62 chr4 29329737 29329871 -154958791 - L2 LINE L2 -437 2877 2747 1921 123 6 25 chr4 29329871 29330188 -154958474 - AluSx SINE Alu -1 311 1 328 326 81 62 chr4 29330188 29330375 -154958287 - L2 LINE L2 -567 2747 2550 386 344 74 34 chr4 29330493 29330871 -154957791 - L2 LINE L2 -1224 2090 1698 30 0 0 0 chr4 29331809 29331839 -154956823 + AT_rich Low_complexity Low_complexity 1 30 0 264 239 76 22 chr4 29332092 29332184 -154956478 + L1MC4a LINE L1 5834 5930 -1878 209 222 0 0 chr4 29332224 29332269 -154956393 + (TA)n Simple_repeat Simple_repeat 1 45 0 22 0 0 0 chr4 29332395 29332417 -154956245 + AT_rich Low_complexity Low_complexity 1 22 0 1819 147 7 10 chr4 29332424 29332730 -154955932 + AluSx SINE Alu 1 305 -7 204 214 0 36 chr4 29332756 29332812 -154955850 + A-rich Low_complexity Low_complexity 2 55 0 180 319 43 14 chr4 29333617 29333686 -154954976 - MER5A DNA MER1_type -21 168 98 183 286 24 48 chr4 29334081 29334165 -154954497 - L2 LINE L2 -1903 1411 1330 764 190 127 13 chr4 29334630 29334788 -154953874 - MER45A DNA AcHobo 0 178 3 270 234 76 108 chr4 29335826 29335984 -154952678 - MIR SINE MIR -42 220 68 300 230 20 10 chr4 29336217 29336317 -154952345 - MER113 DNA MER1_type? -415 106 6 454 333 36 18 chr4 29336619 29336838 -154951824 - L3 LINE CR1 -498 1079 857 517 240 45 169 chr4 29337168 29337270 -154951392 - L1ME4a LINE L1 -230 5891 5778 2007 128 7 0 chr4 29337270 29337559 -154951103 + AluSx SINE Alu 1 291 -21 517 240 45 169 chr4 29337559 29337922 -154950740 - L1ME4a LINE L1 -343 5778 5484 1002 184 27 5 chr4 29338575 29338760 -154949902 + MER5A DNA MER1_type 1 189 0 349 274 48 0 chr4 29339356 29339440 -154949222 + MER117 DNA MER1_type 109 196 -1 287 140 105 0 chr4 29339469 29339526 -154949136 + L2 LINE L2 3210 3272 0 24 0 0 0 chr4 29342350 29342374 -154946288 + AT_rich Low_complexity Low_complexity 1 24 0 411 292 40 71 chr4 29342558 29342911 -154945751 + L1ME4a LINE L1 5573 5914 -207 261 0 0 0 chr4 29342929 29342958 -154945704 + (TC)n Simple_repeat Simple_repeat 1 29 0 * 306 0 0 0 chr4 29342957 29342991 -154945671 + (CA)n Simple_repeat Simple_repeat 1 34 0 282 56 0 0 chr4 29342991 29343027 -154945635 + (GA)n Simple_repeat Simple_repeat 1 36 0 2614 54 0 0 chr4 29343111 29343407 -154945255 - AluY SINE Alu -15 296 1 182 200 73 0 chr4 29344179 29344234 -154944428 - L2 LINE L2 -335 2978 2920 3473 179 6 25 chr4 29344288 29344920 -154943742 - MER82 DNA MER2_type -4 649 30 230 343 19 19 chr4 29345606 29345714 -154942948 + MIR SINE MIR 33 140 -122 236 213 0 0 chr4 29346975 29347022 -154941640 + MER91 DNA MER1_type 1 47 -93 411 308 109 24 chr4 29347705 29348196 -154940466 + L2 LINE L2 2739 3272 -41 2062 125 4 0 chr4 29348419 29348735 -154939927 + AluSx SINE Alu 1 317 0 557 258 54 21 chr4 29348801 29349020 -154939642 - MIR SINE MIR -34 228 11 279 215 156 76 chr4 29349138 29349375 -154939287 + L2 LINE L2 2900 3155 -158 232 240 94 10 chr4 29349375 29349471 -154939191 - HsTC2 DNA Tc2 0 1900 1797 340 118 0 0 chr4 29349480 29349531 -154939131 - HsTC2 DNA Tc2 -1846 52 2 297 192 192 48 chr4 29349532 29349657 -154939005 + L2 LINE L2 3167 3309 -4 478 220 0 10 chr4 29349670 29349770 -154938892 - MIR SINE MIR -91 171 73 290 304 40 27 chr4 29351310 29351458 -154937204 + L2 LINE L2 3104 3253 -60 422 242 86 0 chr4 29351552 29351680 -154936982 - MIR SINE MIR -86 176 38 428 224 10 10 chr4 29351770 29351868 -154936794 - MER63 DNA MER1_type -291 771 674 4302 140 21 28 chr4 29351916 29352218 -154936444 + MER44D DNA MER2_type 32 201 -2286 2242 90 4 0 chr4 29352218 29352535 -154936127 + AluSc SINE Alu 1 318 0 4302 140 21 28 chr4 29352535 29352938 -154935724 + MER44D DNA MER2_type 201 605 0 201 64 0 64 chr4 29354116 29354163 -154934499 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 270 320 86 36 chr4 29354334 29354556 -154934106 - L2 LINE L2 -233 3039 2807 204 213 0 0 chr4 29355131 29355178 -154933484 + (CA)n Simple_repeat Simple_repeat 2 48 0 1035 165 0 24 chr4 29355186 29355356 -154933306 - AluJb SINE Alu -11 301 136 416 19 19 0 chr4 29356207 29356260 -154932402 + (CA)n Simple_repeat Simple_repeat 2 55 0 1019 81 0 0 chr4 29357411 29357535 -154931127 + AluSg/x SINE Alu 176 299 -11 225 286 0 66 chr4 29358431 29358522 -154930140 - MIR3 SINE MIR -32 176 92 654 298 80 30 chr4 29358698 29359061 -154929601 + L2 LINE L2 2879 3259 -54 1955 143 3 34 chr4 29359211 29359533 -154929129 + AluSx SINE Alu 1 312 0 280 263 166 23 chr4 29359837 29360012 -154928650 + MIR SINE MIR 58 257 -5 867 265 90 45 chr4 29360149 29360504 -154928158 - L2 LINE L2 0 3313 2943 1183 200 98 0 chr4 29361160 29361455 -154927207 - MER5C DNA MER1_type 0 324 1 1738 182 65 3 chr4 29362992 29363316 -154925346 + MER47A DNA MER2_type 1 344 -22 6940 165 3 10 chr4 29363317 29365192 -154923470 + L1PB1 LINE L1 3932 5792 -359 189 0 0 0 chr4 29365192 29365213 -154923449 + (CA)n Simple_repeat Simple_repeat 1 21 0 6940 165 3 10 chr4 29365213 29365571 -154923091 + L1PB1 LINE L1 5792 6151 0 510 272 35 40 chr4 29365777 29366005 -154922657 + MER34 LTR ERV1 1 227 -315 323 235 158 65 chr4 29366609 29366856 -154921806 + MER34 LTR ERV1 225 494 -48 2181 129 3 0 chr4 29366939 29367250 -154921412 + AluSx SINE Alu 1 312 0 308 143 238 60 chr4 29367402 29367486 -154921176 + LTR8 LTR ERV1 1 99 -592 2281 165 179 20 chr4 29367490 29368036 -154920626 + LTR10E LTR ERV1 1 633 0 2661 194 46 47 chr4 29368039 29368653 -154920009 + LTR8A LTR ERV1 115 727 0 1467 201 0 0 chr4 29368686 29368925 -154919737 - MER8 DNA MER2_type 0 239 1 232 339 31 23 chr4 29369654 29369784 -154918878 + MIR SINE MIR 58 188 -74 291 28 0 0 chr4 29370737 29370773 -154917889 + (CA)n Simple_repeat Simple_repeat 2 37 0 196 287 205 0 chr4 29370838 29370960 -154917702 + MIR3 SINE MIR 54 200 -8 232 282 51 26 chr4 29370987 29371065 -154917597 + MIR SINE MIR 25 104 -104 204 381 94 5 chr4 29371075 29371298 -154917364 - MIR SINE MIR 0 262 20 181 268 42 0 chr4 29372414 29372485 -154916177 + L2 LINE L2 3115 3188 -125 345 289 29 0 chr4 29372503 29372607 -154916055 + MER94 DNA DNA 6 112 -22 566 293 16 60 chr4 29372732 29372981 -154915681 + MIR SINE MIR 10 247 -15 542 258 22 22 chr4 29373592 29373774 -154914888 - MIR SINE MIR -11 251 70 376 308 76 20 chr4 29373988 29374026 -154914636 + MLT1L LTR MaLR 401 435 -180 690 179 20 77 chr4 29374026 29374222 -154914440 - MER53 DNA DNA 0 189 5 376 308 76 20 chr4 29374222 29374381 -154914281 + MLT1L LTR MaLR 435 609 -6 21 0 0 0 chr4 29374585 29374606 -154914056 + AT_rich Low_complexity Low_complexity 1 21 0 1686 86 9 0 chr4 29374774 29374995 -154913667 + AluY SINE Alu 83 305 -6 198 0 0 0 chr4 29375117 29375139 -154913523 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 189 74 0 0 chr4 29375534 29375561 -154913101 + (TC)n Simple_repeat Simple_repeat 1 27 0 346 261 63 74 chr4 29375843 29376127 -154912535 + L1M4 LINE L1 4565 4845 -1301 294 125 0 0 chr4 29378033 29378081 -154910581 + (GA)n Simple_repeat Simple_repeat 2 49 0 246 95 0 0 chr4 29378169 29378211 -154910451 + (T)n Simple_repeat Simple_repeat 1 42 0 2003 123 3 7 chr4 29378227 29378511 -154910151 + AluSx SINE Alu 1 283 -29 2318 57 0 69 chr4 29378955 29379272 -154909390 + AluY SINE Alu 1 295 -16 27 49 0 0 chr4 29379382 29379423 -154909239 + AT_rich Low_complexity Low_complexity 1 41 0 709 186 16 8 chr4 29379432 29379561 -154909101 - FLAM_C SINE Alu -2 131 2 770 226 57 0 chr4 29379563 29379740 -154908922 + MER3 DNA MER1_type 12 198 -11 1276 230 60 0 chr4 29379811 29380063 -154908599 + Tigger7 DNA MER2_type 1 267 -2220 564 168 0 30 chr4 29380062 29380163 -154908499 + Tigger7 DNA MER2_type 2390 2487 0 * 489 76 0 0 chr4 29380204 29380270 -154908392 + (CA)n Simple_repeat Simple_repeat 1 66 0 34 24 0 0 chr4 29380950 29380991 -154907671 + AT_rich Low_complexity Low_complexity 1 41 0 2012 134 14 7 chr4 29381098 29381412 -154907250 - AluSx SINE Alu 0 316 1 213 39 0 0 chr4 29382145 29382171 -154906491 + (A)n Simple_repeat Simple_repeat 1 26 0 2141 100 7 10 chr4 29383163 29383464 -154905198 + AluSq SINE Alu 2 301 -12 1330 112 0 0 chr4 29383464 29383642 -154905020 + AluSg/x SINE Alu 132 309 -1 466 204 42 42 chr4 29383660 29383802 -154904860 + MER5A DNA MER1_type 43 184 -5 1961 161 45 9 chr4 29384021 29384357 -154904305 + MER7A DNA MER2_type 1 346 0 505 284 59 87 chr4 29385163 29385554 -154903108 + MLT1I LTR MaLR 28 407 -2 389 248 101 20 chr4 29385709 29385858 -154902804 - MIR SINE MIR -54 208 48 265 234 16 16 chr4 29386322 29386386 -154902276 - L2 LINE L2 -2 3270 3207 882 249 114 4 chr4 29386471 29386744 -154901918 + MER46C DNA MER2_type 27 329 -9 412 185 99 0 chr4 29387141 29387222 -154901440 - MER112 DNA MER1_type -78 182 94 220 362 37 3 chr4 29387743 29387868 -154900794 - MIR SINE MIR -59 149 16 1977 177 0 0 chr4 29388092 29388408 -154900254 + MER7A DNA MER2_type 29 342 -4 782 255 62 5 chr4 29388521 29388729 -154899933 + MIR SINE MIR 2 221 -41 457 299 57 0 chr4 29389851 29390055 -154898607 - MIR SINE MIR 0 262 48 270 291 120 8 chr4 29390055 29390172 -154898490 - LTR67 LTR ERVL 0 557 428 295 322 50 33 chr4 29392050 29392171 -154896491 + L2 LINE L2 3146 3268 -4 483 266 131 34 chr4 29394145 29394366 -154894296 - MIR SINE MIR -9 253 12 1837 159 0 13 chr4 29395645 29395953 -154892709 + AluJb SINE Alu 2 305 -7 647 263 18 58 chr4 29396093 29396317 -154892345 + MIR SINE MIR 19 233 -29 410 159 23 34 chr4 29396518 29396606 -154892056 - MIR SINE MIR -34 228 142 1338 212 90 40 chr4 29396706 29397083 -154891579 - MSTD LTR MaLR 0 396 1 381 291 69 26 chr4 29397133 29397322 -154891340 + MLT1J LTR MaLR 307 503 -8 2025 107 41 3 chr4 29397541 29397831 -154890831 - AluSx SINE Alu -9 303 3 228 111 0 0 chr4 29397886 29397922 -154890740 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 220 220 0 51 chr4 29397938 29397997 -154890665 + MIR3 SINE MIR 15 70 -138 249 226 16 16 chr4 29398212 29398274 -154890388 + (TAG)n Simple_repeat Simple_repeat 1 62 0 318 132 0 0 chr4 29398946 29398999 -154889663 + (ATG)n Simple_repeat Simple_repeat 3 55 0 835 200 16 60 chr4 29399054 29399290 -154889372 + L1ME3 LINE L1 5934 6162 -8 264 203 95 0 chr4 29399353 29399427 -154889235 + L1ME4a LINE L1 6000 6080 -41 238 304 14 14 chr4 29400231 29400300 -154888362 + L2 LINE L2 3199 3267 -5 221 81 0 27 chr4 29400582 29400619 -154888043 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 231 316 119 68 chr4 29400883 29401177 -154887485 - L2 LINE L2 -32 3240 2932 302 280 17 86 chr4 29402166 29402338 -154886324 - MIR SINE MIR -53 209 50 216 339 0 0 chr4 29402525 29402584 -154886078 - L2 LINE L2 -9 3263 3205 337 296 50 36 chr4 29402818 29403038 -154885624 - L2 LINE L2 -425 2889 2667 266 352 66 11 chr4 29403837 29404019 -154884643 + L2 LINE L2 2897 3088 -184 262 254 180 74 chr4 29405895 29406017 -154882645 - L2 LINE L2 0 3272 3138 208 321 0 0 chr4 29406177 29406233 -154882429 + L2 LINE L2 3201 3256 -16 1540 195 0 7 chr4 29406668 29406975 -154881687 + AluJb SINE Alu 1 305 -7 874 277 25 4 chr4 29407506 29407713 -154880949 - L1ME1 LINE L1 -5 6161 5947 2203 92 3 10 chr4 29407713 29408027 -154880635 - AluSq SINE Alu -1 312 1 874 277 25 4 chr4 29408027 29408057 -154880605 - L1ME1 LINE L1 -219 5947 5919 665 137 8 16 chr4 29408057 29408181 -154880481 + L1MA10 LINE L1 6212 6334 0 457 111 0 0 chr4 29408304 29408367 -154880295 + MER66B LTR ERV1 295 357 -129 1656 225 37 31 chr4 29408439 29408817 -154879845 - L1ME1 LINE L1 -491 5675 5281 2185 104 3 0 chr4 29408817 29409126 -154879536 - AluSg SINE Alu 0 310 1 1656 225 37 31 chr4 29409126 29409317 -154879345 - L1ME1 LINE L1 -885 5281 5093 405 58 0 0 chr4 29409331 29409383 -154879279 + (TG)n Simple_repeat Simple_repeat 1 52 0 1988 118 0 0 chr4 29409383 29409663 -154878999 - AluSq SINE Alu -33 280 1 846 257 107 65 chr4 29409665 29410077 -154878585 + MLT1J LTR MaLR 41 469 -42 1844 133 14 0 chr4 29410292 29410625 -154878037 - AluSq SINE Alu 0 337 1 455 178 23 62 chr4 29411106 29411235 -154877427 - MIR SINE MIR -34 228 105 296 277 12 0 chr4 29411252 29411335 -154877327 + MLT1K LTR MaLR 26 109 -479 1836 154 36 109 chr4 29411637 29412131 -154876531 - MLT1C LTR MaLR -9 458 1 1683 167 10 16 chr4 29412343 29412654 -154876008 + AluJo SINE Alu 1 309 -3 184 255 21 85 chr4 29413387 29413481 -154875181 - MER5A DNA MER1_type -10 179 92 1541 178 36 111 chr4 29413481 29413504 -154875158 - MLT1C LTR MaLR 0 467 444 2130 104 7 126 chr4 29413504 29413917 -154874745 + THE1B LTR MaLR 1 364 0 1541 178 36 111 chr4 29413917 29414374 -154874288 - MLT1C LTR MaLR -23 444 18 314 333 10 10 chr4 29414411 29414507 -154874155 - MER5A DNA MER1_type -91 98 3 217 407 93 7 chr4 29414507 29414641 -154874021 - L2 LINE L2 -50 3222 3077 665 212 143 25 chr4 29414656 29414859 -154873803 + MIR SINE MIR 36 262 0 274 314 12 12 chr4 29415013 29415099 -154873563 - L2 LINE L2 -4 3268 3183 377 313 18 9 chr4 29415274 29415386 -154873276 + L2 LINE L2 3159 3271 -1 195 256 0 0 chr4 29416198 29416241 -154872421 + L2 LINE L2 3267 3309 -4 31 76 0 0 chr4 29416674 29416740 -154871922 + GC_rich Low_complexity Low_complexity 1 66 0 210 265 20 20 chr4 29416827 29416974 -154871688 + (CCG)n Simple_repeat Simple_repeat 1 147 0 29 84 0 0 chr4 29416989 29417060 -154871602 + GC_rich Low_complexity Low_complexity 1 71 0 353 274 123 0 chr4 29417258 29417364 -154871298 + L2 LINE L2 3191 3309 -4 758 141 0 16 chr4 29417601 29417729 -154870933 + AluJb SINE Alu 13 138 -174 331 301 68 28 chr4 29417737 29417913 -154870749 + MER113 DNA MER1_type? 339 521 0 272 277 79 10 chr4 29417989 29418090 -154870572 - MIR SINE MIR -56 206 99 240 35 0 0 chr4 29418313 29418342 -154870320 + (A)n Simple_repeat Simple_repeat 1 29 0 795 232 98 54 chr4 29418374 29418689 -154869973 + MLT1H LTR MaLR 217 545 -4 342 0 0 0 chr4 29420715 29420753 -154867909 + (TG)n Simple_repeat Simple_repeat 2 39 0 221 242 187 22 chr4 29423121 29423212 -154865450 - L2 LINE L2 -3 3269 3164 374 39 0 0 chr4 29423357 29423408 -154865254 + L1MB4 LINE L1 6118 6168 -12 239 314 0 0 chr4 29423658 29423728 -154864934 + MIR3 SINE MIR 104 173 -35 439 319 0 35 chr4 29423861 29424002 -154864660 - MIR3 SINE MIR -60 148 13 1035 219 102 104 chr4 29424037 29424624 -154864038 - MLT1H1 LTR MaLR -2 553 1 370 141 370 22 chr4 29424963 29425055 -154863607 + L2 LINE L2 3180 3303 -10 322 245 41 31 chr4 29425083 29425181 -154863481 - MIR SINE MIR 0 262 164 196 296 104 72 chr4 29425651 29425776 -154862886 - MIR SINE MIR -112 150 22 1006 210 39 63 chr4 29425805 29426158 -154862504 - MLT1B LTR MaLR -1 389 4 400 277 39 92 chr4 29427212 29427418 -154861244 - L2 LINE L2 -7 3306 3112 272 195 24 37 chr4 29427705 29427787 -154860875 - MLT1J LTR MaLR -8 503 423 513 248 68 31 chr4 29427934 29428095 -154860567 - MLT1J LTR MaLR -268 243 77 185 289 0 22 chr4 29428183 29428228 -154860434 - L3 LINE CR1 -27 1550 1507 1746 249 91 75 chr4 29428255 29428837 -154859825 - MLT1G LTR MaLR -4 583 1 490 304 39 67 chr4 29428863 29429175 -154859487 - MLT1G-int LTR MaLR -31 1340 1038 213 121 0 0 chr4 29429425 29429458 -154859204 + (TTTTG)n Simple_repeat Simple_repeat 5 37 0 2048 106 10 13 chr4 29429838 29430139 -154858523 + AluSq SINE Alu 1 300 -13 507 270 122 39 chr4 29430141 29430371 -154858291 - MLT1G-int LTR MaLR -833 538 290 2175 230 72 22 chr4 29430518 29431070 -154857592 - MLT1G LTR MaLR 0 590 11 193 283 0 0 chr4 29432500 29432553 -154856109 + L2 LINE L2 2838 2890 -424 533 161 14 1 chr4 29432581 29432680 -154855982 + MLT1D LTR MaLR 367 505 0 979 288 60 62 chr4 29433961 29434394 -154854268 + MLT1J2 LTR MaLR 21 447 -3 318 222 0 91 chr4 29435119 29435218 -154853444 + L1MC4 LINE L1 6614 6703 -1339 32 0 0 0 chr4 29435221 29435253 -154853409 + AT_rich Low_complexity Low_complexity 1 32 0 461 214 47 107 chr4 29435253 29435504 -154853158 - MLT1I LTR MaLR 0 413 202 255 235 88 0 chr4 29435515 29435583 -154853079 - MLT1J2 LTR MaLR -304 146 73 344 337 101 17 chr4 29435838 29436016 -154852646 + MLT1K LTR MaLR 54 246 -342 198 0 0 0 chr4 29436627 29436649 -154852013 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 1589 86 9 0 chr4 29436770 29436990 -154851672 - AluY SINE Alu -7 304 83 2086 249 57 29 chr4 29487735 29488788 -154799874 + L1MEc LINE L1 2001 3052 -3488 435 306 9 0 chr4 29488788 29488899 -154799763 + MER81 DNA DNA 1 112 -2 2086 249 57 29 chr4 29488899 29489015 -154799647 + L1MEc LINE L1 3052 3163 -3377 7309 57 12 5 chr4 29489021 29490349 -154798313 + L1PA4 LINE L1 112 6056 -493 3325 31 0 0 chr4 29490371 29490763 -154797899 + L1PA4 LINE L1 6157 6548 -1 21 0 0 0 chr4 29490763 29490784 -154797878 + AT_rich Low_complexity Low_complexity 1 21 0 2472 211 123 152 chr4 29490855 29491748 -154796914 + L1MEc LINE L1 273 1191 -5349 408 153 0 0 chr4 29491748 29491807 -154796855 + AluJ/FLAM SINE Alu 1 59 -253 1482 190 7 7 chr4 29491807 29492076 -154796586 + AluJo SINE Alu 28 296 -16 2472 211 123 152 chr4 29492076 29493289 -154795373 + L1MEc LINE L1 1189 2374 -4166 1188 225 38 12 chr4 29493283 29493625 -154795037 + L1MEc LINE L1 3156 3506 -3034 * 2365 109 64 0 chr4 29493642 29493972 -154794690 + LTR18A LTR ERVL 7 357 0 33713 168 9 3 chr4 29493996 29499222 -154789440 + HERVL18 LTR ERVL 791 6047 0 2137 155 38 0 chr4 29499223 29499540 -154789122 + LTR18A LTR ERVL 1 329 -28 * 2692 143 65 10 chr4 29499534 29500054 -154788608 + MER4B LTR ERV1 47 772 -7 644 234 0 41 chr4 29500075 29500132 -154788530 + L1MA10 LINE L1 6171 6229 -105 3998 173 26 29 chr4 29500132 29500152 -154788510 + MER4E LTR ERV1 1 20 -759 1646 154 14 0 chr4 29500152 29500471 -154788191 - AluJb SINE Alu 0 323 1 3998 173 26 29 chr4 29500471 29501231 -154787431 + MER4E LTR ERV1 20 779 0 644 234 0 41 chr4 29501231 29501344 -154787318 + L1MA10 LINE L1 6229 6334 0 630 293 50 33 chr4 29501347 29501647 -154787015 + MLT1K LTR MaLR 275 579 -9 266 293 129 26 chr4 29502451 29502567 -154786095 + L2 LINE L2 3137 3264 -8 429 226 0 32 chr4 29502754 29502909 -154785753 + G-rich Low_complexity Low_complexity 1 150 0 297 143 20 0 chr4 29502931 29502980 -154785682 - MLT1K LTR MaLR -343 245 196 277 191 9 38 chr4 29503244 29503349 -154785313 + GA-rich Low_complexity Low_complexity 2 103 0 322 234 174 36 chr4 29503355 29503522 -154785140 + MLT1K LTR MaLR 396 585 -3 2189 94 0 23 chr4 29503737 29504046 -154784616 + AluSx SINE Alu 1 302 -10 780 259 137 50 chr4 29504471 29504830 -154783832 + MLT1K LTR MaLR 197 586 -2 1491 191 11 3 chr4 29505150 29505460 -154783202 + AluJo SINE Alu 1 312 0 1287 197 24 45 chr4 29505460 29505790 -154782872 + MER33 DNA MER1_type 1 323 -1 779 287 109 39 chr4 29506252 29506709 -154781953 - LTR16C LTR ERVL -2 489 1 469 260 73 11 chr4 29506713 29506890 -154781772 + MLT1K LTR MaLR 395 582 -6 21 0 0 0 chr4 29508060 29508081 -154780581 + AT_rich Low_complexity Low_complexity 1 21 0 423 262 29 0 chr4 29508662 29508765 -154779897 + MIR SINE MIR 51 156 -106 2476 130 31 0 chr4 29508772 29509125 -154779537 + THE1B LTR MaLR 1 364 0 273 89 0 0 chr4 29509183 29509228 -154779434 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 188 163 0 20 chr4 29509230 29509279 -154779383 + (CA)n Simple_repeat Simple_repeat 1 48 0 384 22 0 0 chr4 29509333 29509378 -154779284 + (TG)n Simple_repeat Simple_repeat 1 45 0 352 200 0 0 chr4 29509463 29509533 -154779129 - MIR SINE MIR 0 262 193 1083 180 57 87 chr4 29509727 29509964 -154778698 + MER33 DNA MER1_type 2 228 -2357 2270 81 7 3 chr4 29509964 29510272 -154778390 - AluSx SINE Alu -3 309 1 1083 180 57 87 chr4 29510272 29510367 -154778295 + MER33 DNA MER1_type 228 324 0 435 266 50 52 chr4 29510540 29510783 -154777879 + MLT1J LTR MaLR 205 367 -144 268 308 0 0 chr4 29510940 29511018 -154777644 + LTR67 LTR ERVL 32 109 -448 263 253 13 13 chr4 29511105 29511184 -154777478 + LTR67 LTR ERVL 471 549 -8 443 255 0 20 chr4 29511595 29511697 -154776965 + MIR SINE MIR 35 134 -128 685 264 6 13 chr4 29511713 29511872 -154776790 + MER45A DNA AcHobo 21 178 0 226 344 56 0 chr4 29511872 29511997 -154776665 + MIR SINE MIR 128 259 -3 427 261 82 46 chr4 29513082 29513264 -154775398 + MIR3 SINE MIR 6 197 -11 2535 29 7 3 chr4 29513264 29513571 -154775091 - AluY SINE Alu -3 308 1 427 261 82 46 chr4 29513571 29513583 -154775079 + MIR3 SINE MIR 197 207 -1 343 208 22 131 chr4 29513706 29513889 -154774773 - L2 LINE L2 -76 3237 3075 495 222 49 25 chr4 29513964 29514126 -154774536 - MLT1G LTR MaLR 0 542 402 501 248 20 34 chr4 29514172 29514317 -154774345 - MLT1G LTR MaLR -286 304 162 1727 206 134 79 chr4 29514317 29514646 -154774016 + MLT1E1 LTR MaLR 1 310 -344 255 31 0 0 chr4 29514646 29514678 -154773984 + (TC)n Simple_repeat Simple_repeat 1 32 0 2042 153 12 52 chr4 29514688 29515094 -154773568 + MLT1B LTR MaLR 1 390 0 1727 206 134 79 chr4 29515094 29515373 -154773289 + MLT1E1 LTR MaLR 318 654 0 343 221 27 41 chr4 29515373 29515516 -154773146 - MLT1G LTR MaLR -400 155 1 311 216 157 49 chr4 29516108 29516210 -154772452 - L3 LINE CR1 -21 1556 1444 494 240 16 16 chr4 29516898 29517019 -154771643 - MIR SINE MIR -16 246 126 375 244 81 16 chr4 29517497 29517620 -154771042 + MIR SINE MIR 37 167 -95 847 285 9 0 chr4 29517627 29517848 -154770814 - MER58A DNA MER1_type -1 223 1 557 198 23 79 chr4 29517859 29517914 -154770748 - MLT1J LTR MaLR -22 489 432 2001 125 0 10 chr4 29517914 29518210 -154770452 + AluSc SINE Alu 1 293 -16 557 198 23 79 chr4 29518210 29518331 -154770331 - MLT1J LTR MaLR -79 432 323 942 278 92 46 chr4 29518336 29518419 -154770243 - L2 LINE L2 -407 2907 2829 302 0 26 0 chr4 29518419 29518457 -154770205 + (TG)n Simple_repeat Simple_repeat 2 40 0 942 278 92 46 chr4 29518457 29518743 -154769919 - L2 LINE L2 -485 2829 2521 349 293 0 0 chr4 29518900 29518982 -154769680 + L2 LINE L2 3160 3241 -31 1014 103 0 0 chr4 29518982 29519118 -154769544 - AluSc SINE Alu -158 151 16 288 218 64 13 chr4 29519465 29519543 -154769119 + MIR3 SINE MIR 90 171 -37 1386 149 116 11 chr4 29519714 29519982 -154768680 + AluSg SINE Alu 1 296 -14 1110 259 8 4 chr4 29520228 29520483 -154768179 + MIR SINE MIR 7 262 0 216 245 19 0 chr4 29520504 29520557 -154768105 + MIR SINE MIR 73 126 -136 671 258 45 0 chr4 29520557 29520735 -154767927 + MIR SINE MIR 59 244 -18 242 276 126 11 chr4 29520751 29520838 -154767824 - L2 LINE L2 -3 3269 3173 2029 224 171 4 chr4 29522578 29523064 -154765598 - MLT1F1 LTR MaLR 0 567 1 387 294 111 8 chr4 29524970 29525096 -154763566 + MLT1E LTR MaLR 1 139 -454 1798 141 7 10 chr4 29525166 29525456 -154763206 - AluJo SINE Alu -21 291 3 211 281 91 74 chr4 29525515 29525636 -154763026 + L2 LINE L2 3177 3299 -14 3728 161 25 0 chr4 29531617 29531790 -154756872 + L1MB3 LINE L1 5524 5691 -492 1843 174 80 3 chr4 29531790 29532129 -154756533 + MLT1A1 LTR MaLR 1 365 0 3728 161 25 0 chr4 29532129 29532599 -154756063 + L1MB3 LINE L1 5691 6183 0 593 105 0 9 chr4 29532743 29532848 -154755814 + L1MA8 LINE L1 6185 6288 -3 605 293 13 47 chr4 29533097 29533329 -154755333 + MIR SINE MIR 39 262 0 1033 205 13 61 chr4 29533942 29534171 -154754491 - MIR SINE MIR -30 232 15 641 304 93 23 chr4 29534223 29534694 -154753968 - L1ME4a LINE L1 -108 6013 5510 351 0 0 0 chr4 29534862 29534901 -154753761 + (TG)n Simple_repeat Simple_repeat 2 40 0 2058 103 17 13 chr4 29535545 29535847 -154752815 + AluSx SINE Alu 1 303 -9 358 305 78 21 chr4 29535897 29536038 -154752624 - MIR SINE MIR -95 167 19 1238 258 31 80 chr4 29536199 29536900 -154751762 + L2 LINE L2 2553 3214 -99 2265 102 0 0 chr4 29536900 29537205 -154751457 - AluSg SINE Alu -5 305 1 1238 258 31 80 chr4 29537205 29537301 -154751361 + L2 LINE L2 3214 3313 0 1714 121 0 0 chr4 29537330 29537579 -154751083 + AluSg SINE Alu 60 308 -2 198 297 81 0 chr4 29537754 29537828 -154750834 - MIR SINE MIR -72 190 111 2000 135 3 6 chr4 29538072 29538384 -154750278 + AluJo SINE Alu 1 311 -1 251 309 138 0 chr4 29539223 29539317 -154749345 + L3 LINE CR1 918 1024 -553 205 156 0 0 chr4 29540433 29540465 -154748197 + MIR SINE MIR 221 252 -10 368 301 141 13 chr4 29540849 29541005 -154747657 + MIR SINE MIR 71 246 -16 257 304 0 29 chr4 29541756 29541827 -154746835 + A-rich Low_complexity Low_complexity 2 71 -29 1729 164 10 7 chr4 29541827 29542120 -154746542 + AluJo SINE Alu 6 299 -13 257 304 0 29 chr4 29542120 29542150 -154746512 + A-rich Low_complexity Low_complexity 71 100 0 2433 101 0 0 chr4 29544527 29544835 -154743827 + AluSg SINE Alu 1 308 -2 2210 125 0 0 chr4 29545845 29546140 -154742522 + AluSx SINE Alu 1 295 -17 1045 220 156 42 chr4 29546728 29547257 -154741405 + L2 LINE L2 2729 3313 0 2330 108 0 0 chr4 29548915 29549220 -154739442 + AluY SINE Alu 1 305 -6 231 61 0 0 chr4 29550325 29550358 -154738304 + (ATG)n Simple_repeat Simple_repeat 1 33 0 282 248 103 34 chr4 29550369 29550486 -154738176 - MIR SINE MIR -18 244 120 2368 96 0 0 chr4 29551492 29551785 -154736877 + AluSx SINE Alu 1 293 -19 281 209 88 77 chr4 29554548 29554639 -154734023 - MIR3 SINE MIR -39 169 78 198 0 0 0 chr4 29554655 29554677 -154733985 + (A)n Simple_repeat Simple_repeat 1 22 0 399 296 38 21 chr4 29555160 29555387 -154733275 + MIR SINE MIR 18 248 -14 195 42 0 0 chr4 29557356 29557380 -154731282 + (CA)n Simple_repeat Simple_repeat 2 25 0 285 264 129 12 chr4 29557384 29557547 -154731115 - MER5A DNA MER1_type -7 182 1 201 291 0 18 chr4 29557961 29558071 -154730591 + C-rich Low_complexity Low_complexity 6 113 0 * 215 200 24 35 chr4 29557991 29558076 -154730586 + (CCG)n Simple_repeat Simple_repeat 1 84 0 23 86 0 0 chr4 29558145 29558203 -154730459 + GC_rich Low_complexity Low_complexity 1 58 0 38 89 0 0 chr4 29558267 29558368 -154730294 + GC_rich Low_complexity Low_complexity 1 101 0 236 276 53 0 chr4 29558939 29559015 -154729647 - MIR SINE MIR -74 188 109 316 261 117 0 chr4 29559636 29559747 -154728915 - MIR SINE MIR -58 204 81 197 235 86 12 chr4 29560065 29560146 -154728516 + MIR SINE MIR 2 88 -174 252 242 234 8 chr4 29560152 29560280 -154728382 + MIR SINE MIR 57 213 -49 630 213 247 0 chr4 29560422 29560596 -154728066 + MER20 DNA MER1_type 3 219 0 214 207 35 0 chr4 29560681 29560739 -154727923 + MIR SINE MIR 90 149 -113 23 0 0 0 chr4 29560975 29560998 -154727664 + AT_rich Low_complexity Low_complexity 1 23 0 1037 333 98 23 chr4 29561339 29561520 -154727142 - L2 LINE L2 -16 3297 3131 2144 138 27 41 chr4 29561520 29561889 -154726773 - THE1B LTR MaLR 0 364 1 1037 333 98 23 chr4 29561889 29562391 -154726271 - L2 LINE L2 -182 3131 2499 2459 55 0 7 chr4 29562391 29562682 -154725980 - AluY SINE Alu -16 295 7 1037 333 98 23 chr4 29562682 29562988 -154725674 - L2 LINE L2 -814 2499 2217 429 347 42 33 chr4 29563835 29564048 -154724614 + MLT1K LTR MaLR 38 252 -336 371 286 6 0 chr4 29564148 29564316 -154724346 - L1M4 LINE L1 -2873 3273 3105 734 80 24 8 chr4 29565537 29565662 -154723000 + (TAGA)n Simple_repeat Simple_repeat 4 130 0 315 260 40 0 chr4 29565844 29565944 -154722718 - L2 LINE L2 -1 3271 3168 236 308 54 8 chr4 29567872 29568002 -154720660 - LTR16A LTR ERVL -314 136 1 1090 151 0 0 chr4 29568510 29568801 -154719861 - FRAM SINE Alu 0 301 11 437 342 71 18 chr4 29569040 29569138 -154719524 - MIR SINE MIR 0 262 171 2163 146 36 33 chr4 29569138 29569501 -154719161 - THE1B LTR MaLR 0 364 1 437 342 71 18 chr4 29569501 29569627 -154719035 - MIR SINE MIR -91 171 26 183 405 0 0 chr4 29569766 29569850 -154718812 - L2 LINE L2 -986 2328 2245 582 299 52 34 chr4 29571436 29571704 -154716958 + L2 LINE L2 2997 3269 -44 223 324 49 10 chr4 29571761 29571863 -154716799 + L2 LINE L2 3167 3272 0 671 211 0 8 chr4 29572102 29572235 -154716427 + FLAM_A SINE Alu 1 132 -1 195 42 0 0 chr4 29572346 29572370 -154716292 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 207 205 24 72 chr4 29573193 29573276 -154715386 + L2 LINE L2 2909 2987 -285 2209 89 0 7 chr4 29573319 29573600 -154715062 + AluSx SINE Alu 1 279 -33 428 0 19 0 chr4 29573601 29573653 -154715009 + (CA)n Simple_repeat Simple_repeat 2 54 0 785 191 38 108 chr4 29573763 29573888 -154714774 - Charlie5 DNA MER1_type -1 2623 2491 2361 169 39 28 chr4 29573888 29574350 -154714312 - MLT1C LTR MaLR 0 467 1 785 191 38 108 chr4 29574350 29574565 -154714097 - Charlie5 DNA MER1_type -133 2491 2307 7483 189 32 17 chr4 29574565 29574601 -154714061 - L1P4 LINE L1 -650 5516 5482 1707 167 0 57 chr4 29574601 29574919 -154713743 - AluJo SINE Alu -12 300 1 7483 189 32 17 chr4 29574919 29575400 -154713262 - L1P4 LINE L1 -684 5482 5009 1407 110 10 0 chr4 29575400 29575609 -154713053 - L1PB2 LINE L1 0 6151 5941 7483 189 32 17 chr4 29575609 29576855 -154711807 - L1P4 LINE L1 -1157 5009 3728 4079 123 5 16 chr4 29576857 29577492 -154711170 + L1PA16 LINE L1 5532 6159 -7 397 223 0 11 chr4 29577492 29577586 -154711076 - Charlie5 DNA MER1_type -312 2300 2208 1581 217 104 7 chr4 29577752 29578167 -154710495 - LTR43 LTR ERV1 -21 581 127 296 137 20 0 chr4 29578269 29578320 -154710342 - LTR60 LTR ERV1 -534 52 1 289 296 130 12 chr4 29578448 29578621 -154710041 - MIR SINE MIR -67 141 3 2746 82 6 0 chr4 29579316 29579669 -154708993 + THE1A LTR MaLR 1 355 0 398 218 30 60 chr4 29579743 29579877 -154708785 - MIR SINE MIR -22 186 56 310 260 32 52 chr4 29580225 29580379 -154708283 + MIR SINE MIR 32 182 -80 240 54 108 0 chr4 29580396 29580433 -154708229 - MER106A DNA MER1_type -47 189 149 1861 169 3 3 chr4 29580535 29580837 -154707825 - AluJo SINE Alu -5 307 6 505 275 183 50 chr4 29581392 29581504 -154707158 - L2 LINE L2 -4 3309 3213 1919 164 0 3 chr4 29581504 29581803 -154706859 - AluJo SINE Alu -13 299 2 505 275 183 50 chr4 29581803 29582328 -154706334 - L2 LINE L2 -100 3213 2568 354 251 211 0 chr4 29582526 29582697 -154705965 - MIR SINE MIR -10 252 46 195 69 0 0 chr4 29582944 29582973 -154705689 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 2348 187 37 24 chr4 29584087 29584578 -154704084 - MLT1D LTR MaLR -8 497 1 256 265 176 24 chr4 29584706 29584876 -154703786 + LTR33A LTR ERVL 9 204 -319 436 128 115 0 chr4 29585018 29585096 -154703566 + MER4A LTR ERV1 1 87 -577 1876 116 0 32 chr4 29585132 29585417 -154703245 + MER4A LTR ERV1 388 663 -1 392 221 32 0 chr4 29585418 29585513 -154703149 + LTR33A LTR ERVL 416 513 -10 243 320 39 33 chr4 29585542 29585695 -154702967 + MARNA DNA Mariner 95 248 -338 1306 211 124 75 chr4 29585764 29585953 -154702709 - MLT1D LTR MaLR -27 467 289 4016 114 62 3 chr4 29585953 29586531 -154702131 + LTR9 LTR ERV1 1 612 0 1306 211 124 75 chr4 29586531 29586711 -154701951 - MLT1D LTR MaLR -205 289 79 5308 62 3 12 chr4 29586711 29587377 -154701285 - PABL_A LTR ERV1 0 660 1 1306 211 124 75 chr4 29587377 29587461 -154701201 - MLT1D LTR MaLR -415 79 1 288 77 0 0 chr4 29587497 29587536 -154701126 + (CA)n Simple_repeat Simple_repeat 1 39 0 264 292 11 0 chr4 29587539 29587628 -154701034 + MARNA DNA Mariner 262 351 -235 245 261 261 0 chr4 29588652 29588767 -154699895 - MIR SINE MIR -34 228 84 276 280 33 71 chr4 29588773 29588955 -154699707 - MER104 DNA Tc2 -4 176 2 274 278 89 11 chr4 29589239 29589329 -154699333 - L2 LINE L2 -33 3280 3184 302 250 0 0 chr4 29589707 29589771 -154698891 + MIR SINE MIR 19 82 -180 435 300 88 19 chr4 29589890 29590150 -154698512 - L2 LINE L2 -538 2776 2499 1220 230 111 35 chr4 29590310 29590744 -154697918 + MLT1C LTR MaLR 1 467 0 538 275 6 35 chr4 29590932 29591103 -154697559 + MLT1J LTR MaLR 20 185 -326 1395 191 48 29 chr4 29591172 29591487 -154697175 + MER33 DNA MER1_type 1 321 -3 330 250 0 14 chr4 29591498 29591570 -154697092 + MER58A DNA MER1_type 1 71 -36 2190 122 0 0 chr4 29591592 29591886 -154696776 - AluJb SINE Alu -18 294 1 789 257 6 0 chr4 29591891 29592066 -154696596 + MER58A DNA MER1_type 40 215 -9 296 231 61 61 chr4 29592063 29592210 -154696452 + MLT1J LTR MaLR 321 467 -44 * 2061 144 39 33 chr4 29593215 29593577 -154695085 - THE1B LTR MaLR 0 364 1 2181 144 36 25 chr4 29594199 29594559 -154694103 + THE1B LTR MaLR 1 364 0 414 316 94 8 chr4 29594617 29594861 -154693801 + L2 LINE L2 2818 3082 -190 468 224 110 68 chr4 29595064 29595323 -154693339 - L1ME LINE L1 -502 5619 5353 248 300 46 39 chr4 29596045 29596175 -154692487 + L2 LINE L2 3179 3309 -4 213 283 33 0 chr4 29596175 29596235 -154692427 + (AATTG)n Simple_repeat Simple_repeat 1 62 0 1045 219 218 27 chr4 29596305 29596736 -154691926 - LTR33A LTR ERVL 0 523 48 430 237 244 6 chr4 29597340 29597496 -154691166 + MIR SINE MIR 67 259 -3 2112 109 7 0 chr4 29597513 29597817 -154690845 - AluY SINE Alu -4 307 2 707 303 38 41 chr4 29597863 29598206 -154690456 + L2 LINE L2 2931 3272 0 2093 123 0 0 chr4 29598455 29598757 -154689905 + AluSx SINE Alu 5 306 -6 376 261 48 0 chr4 29599080 29599198 -154689464 - MIR SINE MIR -60 148 65 685 262 89 11 chr4 29599284 29599475 -154689187 - MIR SINE MIR -11 251 46 771 182 62 17 chr4 29599494 29599670 -154688992 - MER53 DNA DNA -4 185 2 2326 122 42 14 chr4 29600550 29600904 -154687758 + THE1B LTR MaLR 1 364 0 554 273 94 28 chr4 29600927 29601272 -154687390 - MLT1J2 LTR MaLR -8 401 54 1317 148 15 38 chr4 29601435 29601584 -154687078 + L1MB3 LINE L1 5925 6067 -116 2365 107 11 29 chr4 29601584 29601966 -154686696 - THE1C LTR MaLR 0 375 1 1317 148 15 38 chr4 29601966 29602079 -154686583 + L1MB3 LINE L1 6067 6181 -2 414 0 0 0 chr4 29602088 29602134 -154686528 + (TA)n Simple_repeat Simple_repeat 1 46 0 607 234 17 17 chr4 29602477 29602652 -154686010 + MER5B DNA MER1_type 4 178 0 283 310 101 8 chr4 29602690 29602819 -154685843 + MIR SINE MIR 9 149 -113 583 290 43 6 chr4 29603966 29604128 -154684534 + MIR SINE MIR 84 251 -11 360 267 114 0 chr4 29604627 29604732 -154683930 + MER5B DNA MER1_type 5 121 -57 971 148 0 0 chr4 29604733 29604919 -154683743 - AluSg/x SINE Alu 0 320 135 195 227 23 0 chr4 29604919 29604963 -154683699 + MER5B DNA MER1_type 112 156 -22 339 113 0 0 chr4 29605085 29605138 -154683524 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 510 231 70 48 chr4 29605675 29606007 -154682655 + MLT1H LTR MaLR 73 453 -96 1855 149 62 37 chr4 29606007 29606362 -154682300 - THE1B LTR MaLR 0 364 1 510 231 70 48 chr4 29606362 29606458 -154682204 + MLT1H LTR MaLR 453 545 -4 789 192 31 92 chr4 29606618 29606847 -154681815 + Charlie4 DNA MER1_type 1 215 -1746 * 914 208 38 0 chr4 29606846 29607058 -154681604 + Charlie4 DNA MER1_type 1742 1961 0 801 251 15 5 chr4 29607428 29607623 -154681039 - MIR SINE MIR 0 262 66 563 150 24 203 chr4 29607641 29607848 -154680814 + MER5B DNA MER1_type 1 170 -8 2797 144 19 0 chr4 29608318 29608734 -154679928 + MSTB LTR MaLR 1 424 -2 344 143 18 0 chr4 29608877 29608933 -154679729 - LTR40a LTR ERVL -2 517 461 1329 130 0 5 chr4 29608933 29609125 -154679537 + AluSx SINE Alu 1 191 -121 1227 226 112 25 chr4 29609160 29609554 -154679108 - LTR40c LTR ERVL -37 428 1 455 283 110 21 chr4 29609565 29609756 -154678906 + L2 LINE L2 3106 3313 0 775 219 6 12 chr4 29610152 29610324 -154678338 + MIR SINE MIR 55 224 -38 2234 170 66 25 chr4 29610564 29611005 -154677657 - LTR2B LTR ERV1 0 490 32 409 174 221 74 chr4 29611309 29611458 -154677204 - MIR SINE MIR -42 220 50 1821 181 132 50 chr4 29611473 29611585 -154677077 + MLT1D LTR MaLR 5 106 -399 2034 100 0 4 chr4 29611585 29611866 -154676796 - AluSg SINE Alu -23 287 8 1821 181 132 50 chr4 29611866 29612216 -154676446 + MLT1D LTR MaLR 106 505 0 644 261 206 9 chr4 29612383 29612601 -154676061 + MIR SINE MIR 2 262 0 963 122 0 0 chr4 29612622 29612769 -154675893 - AluJb SINE Alu -2 310 164 530 168 0 137 chr4 29613375 29613506 -154675156 + MER81 DNA DNA 2 114 0 264 276 94 16 chr4 29613764 29613891 -154674771 - MLT1L LTR MaLR -13 602 466 634 231 26 6 chr4 29614235 29614391 -154674271 + MER5B DNA MER1_type 3 161 -17 813 209 110 16 chr4 29614403 29614594 -154674068 - MER3 DNA MER1_type 0 209 1 681 312 32 12 chr4 29614685 29614938 -154673724 + MIR SINE MIR 2 259 -3 203 237 85 0 chr4 29615264 29615323 -154673339 + MIR SINE MIR 85 148 -60 411 38 0 0 chr4 29616481 29616534 -154672128 + (GA)n Simple_repeat Simple_repeat 2 54 0 656 284 5 5 chr4 29616730 29616920 -154671742 + MIR SINE MIR 23 212 -50 1692 175 0 3 chr4 29617112 29617398 -154671264 + AluJo SINE Alu 1 285 -27 694 236 50 16 chr4 29617772 29617954 -154670708 - MER5A DNA MER1_type -1 188 1 1666 161 7 3 chr4 29618366 29618651 -154670011 + AluJo SINE Alu 1 286 -26 435 212 179 57 chr4 29618815 29619132 -154669530 - MLT1H LTR MaLR 0 590 151 2144 158 40 21 chr4 29619161 29619590 -154669072 - LTR56 LTR ERV1 0 445 9 307 230 167 32 chr4 29619595 29619721 -154668941 + LTR50 LTR ERVL 154 296 -499 742 212 161 43 chr4 29619723 29619942 -154668720 + LTR50 LTR ERVL 503 758 -37 2080 126 0 0 chr4 29619942 29620244 -154668418 + AluSx SINE Alu 1 302 -10 742 212 161 43 chr4 29620244 29620279 -154668383 + LTR50 LTR ERVL 758 787 -8 573 259 98 92 chr4 29620308 29620776 -154667886 - MLT1L LTR MaLR -22 593 123 2569 132 47 0 chr4 29621654 29622063 -154666599 + MSTA LTR MaLR 1 428 0 205 95 24 24 chr4 29622183 29622225 -154666437 + (TATATG)n Simple_repeat Simple_repeat 5 46 0 281 164 100 0 chr4 29622282 29622392 -154666270 + (TA)n Simple_repeat Simple_repeat 1 121 0 2183 82 10 0 chr4 29622438 29622732 -154665930 - AluSg1 SINE Alu -12 297 1 195 302 0 0 chr4 29622786 29622829 -154665833 - MIR SINE MIR -164 98 56 197 347 116 16 chr4 29624138 29624259 -154664403 - MER5A DNA MER1_type -3 186 54 396 228 86 41 chr4 29624824 29625021 -154663641 + L1ME4a LINE L1 5463 5668 -453 203 365 24 0 chr4 29625042 29625127 -154663535 - L2 LINE L2 -1 3312 3226 274 317 0 0 chr4 29625186 29625290 -154663372 + L1ME4a LINE L1 5721 5824 -297 805 161 0 0 chr4 29625296 29625426 -154663236 + AluJo/FLAM SINE Alu 2 131 -171 1826 99 92 0 chr4 29625428 29625690 -154662972 + AluSg SINE Alu 1 286 -24 27 0 0 0 chr4 29625699 29625726 -154662936 + AT_rich Low_complexity Low_complexity 1 27 0 1978 147 0 0 chr4 29625735 29626041 -154662621 + AluSx SINE Alu 1 306 -6 329 245 185 46 chr4 29626069 29626285 -154662377 + L1ME4a LINE L1 5850 6095 -26 954 93 11 33 chr4 29626338 29626521 -154662141 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 356 0 0 22 chr4 29626522 29626567 -154662095 + (GAAAA)n Simple_repeat Simple_repeat 1 44 0 183 156 0 0 chr4 29627858 29627890 -154660772 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 2012 194 13 18 chr4 29627942 29628334 -154660328 - MLT2D LTR ERVL -14 400 11 821 230 0 0 chr4 29628351 29628529 -154660133 - L1PB4 LINE L1 -2 6154 5977 467 312 113 23 chr4 29629575 29629796 -154658866 - MIR SINE MIR -2 260 20 1985 144 0 3 chr4 29629829 29630141 -154658521 + AluSx SINE Alu 1 311 -1 757 96 16 8 chr4 29630141 29630266 -154658396 + (GGAA)n Simple_repeat Simple_repeat 2 127 0 383 291 16 16 chr4 29630290 29630417 -154658245 - MER5B DNA MER1_type -51 127 1 216 0 0 0 chr4 29631044 29631068 -154657594 + (A)n Simple_repeat Simple_repeat 1 24 0 348 24 0 0 chr4 29631353 29631394 -154657268 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 459 339 192 32 chr4 29631733 29632228 -154656434 - L3 LINE CR1 -970 607 34 655 203 165 0 chr4 29632405 29632563 -154656099 - MIR SINE MIR -77 185 2 2828 143 26 0 chr4 29632975 29633430 -154655232 + MLT1C LTR MaLR 1 467 0 1735 181 0 0 chr4 29634010 29634313 -154654349 + AluJo SINE Alu 1 303 -9 294 314 16 33 chr4 29634323 29634444 -154654218 + GA-rich Low_complexity Low_complexity 2 120 0 555 185 161 19 chr4 29634565 29634727 -154653935 - MER46C DNA MER2_type -127 211 27 484 324 44 5 chr4 29635356 29635539 -154653123 + MIR SINE MIR 11 200 -62 355 157 0 0 chr4 29636208 29636259 -154652403 - MLT1J LTR MaLR -202 309 259 409 282 87 32 chr4 29636348 29636550 -154652112 + MLT1H1 LTR MaLR 48 264 -326 2041 110 31 0 chr4 29636594 29636886 -154651776 + AluSq SINE Alu 1 301 -12 621 299 40 5 chr4 29636985 29637186 -154651476 + MIR SINE MIR 17 224 -38 244 237 39 135 chr4 29637233 29637389 -154651273 + L2 LINE L2 3118 3258 -14 1150 274 60 62 chr4 29637422 29637923 -154650739 - MLT1J LTR MaLR -6 505 6 494 232 32 24 chr4 29639024 29639149 -154649513 - MIR SINE MIR -48 214 89 281 283 18 18 chr4 29639295 29639408 -154649254 - MIR3 SINE MIR -2 206 94 289 348 99 25 chr4 29639706 29639867 -154648795 - MIR SINE MIR -29 233 61 1613 164 85 35 chr4 29639877 29640195 -154648467 + MER58B DNA MER1_type 4 337 -4 540 219 152 44 chr4 29643153 29643495 -154645167 + L1MC5 LINE L1 7547 7925 -36 511 249 200 24 chr4 29643911 29644116 -154644546 - MIR SINE MIR 0 262 22 408 304 88 11 chr4 29644491 29644672 -154643990 - LTR16A LTR ERVL -6 444 250 187 344 0 16 chr4 29644867 29644928 -154643734 - L2 LINE L2 -526 2788 2729 509 226 73 37 chr4 29644980 29645144 -154643518 - L2 LINE L2 -2 3311 3142 396 240 260 0 chr4 29645158 29645304 -154643358 + MER5A DNA MER1_type 4 187 -2 1557 213 76 126 chr4 29645353 29646266 -154642396 - L2 LINE L2 -226 3087 2223 394 302 127 21 chr4 29646713 29646902 -154641760 - MIR SINE MIR -4 258 50 32 26 0 0 chr4 29647289 29647328 -154641334 + AT_rich Low_complexity Low_complexity 1 39 0 29 28 0 0 chr4 29648275 29648311 -154640351 + AT_rich Low_complexity Low_complexity 1 36 0 246 222 0 0 chr4 29649792 29649846 -154638816 + MER103 DNA DNA 48 101 -65 1108 149 85 0 chr4 29650495 29650696 -154637966 - MER20 DNA MER1_type -1 218 1 810 145 8 0 chr4 29654105 29654222 -154634440 - AluJb SINE Alu -194 118 1 544 271 159 62 chr4 29654840 29655546 -154633116 + L2 LINE L2 2521 3283 -30 316 135 37 0 chr4 29655658 29655722 -154632940 + FLAM SINE Alu 63 107 -26 21 82 0 0 chr4 29655772 29655821 -154632841 + AT_rich Low_complexity Low_complexity 1 49 0 1752 107 8 4 chr4 29656607 29656849 -154631813 + AluSx SINE Alu 1 243 -69 680 59 0 0 chr4 29656849 29656934 -154631728 - AluSq/x SINE Alu -204 108 24 714 266 62 17 chr4 29660126 29660369 -154628293 + MIR SINE MIR 6 256 -6 1861 154 3 35 chr4 29661099 29661418 -154627244 + AluJb SINE Alu 1 309 -3 711 197 0 16 chr4 29661465 29661587 -154627075 + FLAM_A SINE Alu 2 121 -12 297 0 0 0 chr4 29661587 29661620 -154627042 + (TG)n Simple_repeat Simple_repeat 2 34 0 254 311 68 0 chr4 29661723 29661797 -154626865 - L2 LINE L2 -1 3271 3193 15728 128 10 2 chr4 29662093 29665489 -154623173 + L1PA10 LINE L1 2746 6155 -13 828 110 0 25 chr4 29665617 29665735 -154622927 + FLAM_C SINE Alu 14 128 -15 27 0 0 0 chr4 29665735 29665762 -154622900 + AT_rich Low_complexity Low_complexity 1 27 0 226 309 4 64 chr4 29666036 29666147 -154622515 + MER5A DNA MER1_type 1 116 -73 216 257 276 19 chr4 29666450 29666555 -154622107 + L2 LINE L2 3182 3313 0 2063 95 4 0 chr4 29666651 29666915 -154621747 - AluSc SINE Alu -9 300 36 225 357 38 38 chr4 29666915 29667100 -154621562 - L2 LINE L2 -605 2709 2525 473 279 201 5 chr4 29667712 29667916 -154620746 + MIR SINE MIR 3 246 -16 349 225 34 0 chr4 29668028 29668117 -154620545 + L2 LINE L2 1912 2003 -1311 1621 199 10 0 chr4 29668117 29668413 -154620249 - MER2 DNA MER2_type 0 345 47 2258 225 190 26 chr4 29668428 29669261 -154619401 + L2 LINE L2 2015 3065 -248 2165 113 0 0 chr4 29669261 29669554 -154619108 + AluSx SINE Alu 1 293 -19 2258 225 190 26 chr4 29669554 29669830 -154618832 + L2 LINE L2 3065 3295 -18 1323 173 72 36 chr4 29670463 29670899 -154617763 - L1ME1 LINE L1 -6 6160 5342 2153 83 45 3 chr4 29671325 29671613 -154617049 + AluSg SINE Alu 1 300 -10 521 145 65 16 chr4 29672466 29672590 -154616072 + L1MA8 LINE L1 6150 6279 -12 238 276 29 57 chr4 29672703 29672808 -154615854 - MIR SINE MIR -6 256 155 985 263 219 19 chr4 29674018 29674689 -154613973 + L2 LINE L2 2489 3308 -5 28 79 0 0 chr4 29675017 29675080 -154613582 + AT_rich Low_complexity Low_complexity 1 63 0 425 278 116 37 chr4 29675174 29675337 -154613325 + MIR SINE MIR 28 214 -48 2631 46 0 3 chr4 29675337 29675643 -154613019 + AluY SINE Alu 1 305 -6 425 278 116 37 chr4 29675643 29675695 -154612967 + MIR SINE MIR 214 260 -2 1206 157 9 9 chr4 29675894 29676123 -154612539 + L1MA4A LINE L1 6063 6291 -12 1645 159 10 30 chr4 29676330 29676632 -154612030 - AluY SINE Alu -15 296 1 458 254 33 16 chr4 29677198 29677320 -154611342 + MLT1K LTR MaLR 465 588 0 517 271 141 17 chr4 29677616 29677793 -154610869 - L2 LINE L2 0 3313 3115 495 216 39 20 chr4 29677795 29677948 -154610714 - MER104 DNA Tc2 -18 162 7 1712 151 68 4 chr4 29677990 29678268 -154610394 + AluJb SINE Alu 1 296 -16 438 329 96 10 chr4 29678473 29678728 -154609934 - L2 LINE L2 -271 3042 2750 22 103 0 0 chr4 29679539 29679617 -154609045 + AT_rich Low_complexity Low_complexity 1 78 0 24 0 0 0 chr4 29681875 29681899 -154606763 + AT_rich Low_complexity Low_complexity 1 24 0 2554 42 0 13 chr4 29683687 29683994 -154604668 + AluY SINE Alu 1 303 -8 2352 83 0 13 chr4 29684317 29684630 -154604032 + AluY SINE Alu 1 309 -2 513 207 44 30 chr4 29685066 29685238 -154603424 + MLT1F LTR MaLR 13 198 -351 * 623 227 81 22 chr4 29685232 29685417 -154603245 + MLT1F LTR MaLR 347 542 0 2324 72 0 3 chr4 29685434 29685739 -154602923 - AluY SINE Alu -7 304 1 577 116 21 0 chr4 29685885 29685980 -154602682 - L1M4 LINE L1 -748 5436 5340 1692 174 3 10 chr4 29685981 29686274 -154602388 + AluJo SINE Alu 1 291 -21 746 239 75 43 chr4 29686361 29686549 -154602113 - MIR SINE MIR -49 213 20 756 234 87 64 chr4 29686950 29687197 -154601465 + MLT1K LTR MaLR 260 517 -71 2339 102 0 0 chr4 29687197 29687501 -154601161 - AluSg1 SINE Alu -5 304 1 756 234 87 64 chr4 29687501 29687565 -154601097 + MLT1K LTR MaLR 517 578 -10 825 158 23 0 chr4 29687604 29687737 -154600925 - FRAM SINE Alu -5 171 36 1480 182 22 4 chr4 29687824 29688093 -154600569 + AluJo SINE Alu 1 274 -38 1224 120 0 0 chr4 29688196 29688363 -154600299 + AluSg/x SINE Alu 129 295 -17 1662 253 37 6 chr4 29688639 29688669 -154599993 - L1ME1 LINE L1 0 6166 6138 2064 135 0 0 chr4 29688669 29688958 -154599704 - AluSg SINE Alu -21 289 1 1662 253 37 6 chr4 29688958 29689409 -154599253 - L1ME1 LINE L1 -28 6138 5670 1177 122 0 17 chr4 29689410 29689582 -154599080 - AluSg/x SINE Alu -9 301 133 1230 228 56 0 chr4 29689582 29689885 -154598777 - L1ME1 LINE L1 -475 5691 5372 1455 201 101 16 chr4 29689932 29690342 -154598320 - MER114 LTR ERV -76 572 123 1973 133 38 62 chr4 29690342 29690742 -154597920 - MLT1B LTR MaLR 0 390 1 1455 201 101 16 chr4 29690742 29690759 -154597903 - MER114 LTR ERV -525 123 109 298 208 134 59 chr4 29690999 29691201 -154597461 - L1ME4a LINE L1 -2 6119 5903 305 158 48 26 chr4 29691217 29691307 -154597355 - L1MA9 LINE L1 -24 6267 6169 1078 137 11 0 chr4 29691382 29691557 -154597105 + AluSq SINE Alu 137 313 0 2261 116 0 0 chr4 29692211 29692513 -154596149 - AluSx SINE Alu -10 302 1 249 108 0 0 chr4 29692516 29692553 -154596109 + (TTC)n Simple_repeat Simple_repeat 2 38 0 25 51 0 0 chr4 29693569 29693608 -154595054 + AT_rich Low_complexity Low_complexity 1 39 0 2061 117 0 13 chr4 29693946 29694254 -154594408 + AluSx SINE Alu 1 304 -8 275 0 29 0 chr4 29694944 29694979 -154593683 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 243 241 113 120 chr4 29695356 29695622 -154593040 + L2 LINE L2 3050 3313 0 1857 253 64 19 chr4 29695636 29696213 -154592449 + LTR26 LTR ERV1 1 603 0 1623 171 146 22 chr4 29696340 29696709 -154591953 - MER63B DNA MER1_type -21 415 1 281 288 198 27 chr4 29696798 29696909 -154591753 + L2 LINE L2 3137 3266 -6 281 298 79 0 chr4 29697573 29697687 -154590975 - MIR SINE MIR -71 191 69 277 219 16 31 chr4 29697687 29697751 -154590911 + MLT1L LTR MaLR 1 63 -552 869 175 0 25 chr4 29697813 29697973 -154590689 - AluJb SINE Alu -19 293 138 472 289 41 91 chr4 29698008 29698350 -154590312 + MLT1L LTR MaLR 197 521 -94 2133 99 7 26 chr4 29698408 29698712 -154589950 - AluSx SINE Alu -14 298 1 1357 224 62 9 chr4 29698750 29699089 -154589573 + L1ME3 LINE L1 5581 5937 -225 516 102 20 61 chr4 29699092 29699190 -154589472 + THE1C LTR MaLR 199 292 -83 864 214 43 51 chr4 29699465 29699699 -154588963 + L1ME3 LINE L1 5925 6156 -6 486 254 77 86 chr4 29699786 29699931 -154588731 - MIR SINE MIR -49 213 69 2137 130 3 3 chr4 29699931 29700230 -154588432 - AluSx SINE Alu -13 299 1 486 254 77 86 chr4 29700230 29700293 -154588369 - MIR SINE MIR -193 69 7 875 153 0 29 chr4 29700400 29700537 -154588125 + FLAM_C SINE Alu 1 133 0 389 264 166 5 chr4 29700572 29700765 -154587897 + L1ME4a LINE L1 5684 5907 -214 1923 199 5 5 chr4 29700849 29701251 -154587411 - L1PB1 LINE L1 -1640 4506 4105 * 6636 134 6 2 chr4 29701250 29702879 -154585783 + L1PB1 LINE L1 4520 6151 0 258 279 93 16 chr4 29703104 29703233 -154585429 + L1ME4a LINE L1 5967 6105 -16 388 230 206 8 chr4 29703555 29703681 -154584981 - MER5B DNA MER1_type -2 176 26 329 269 74 67 chr4 29704308 29704457 -154584205 - MIR SINE MIR -106 156 7 240 111 0 0 chr4 29705177 29705213 -154583449 + (TCCA)n Simple_repeat Simple_repeat 2 37 0 247 227 173 40 chr4 29705427 29705577 -154583085 + L1ME4a LINE L1 5947 6116 -5 1737 167 3 7 chr4 29705725 29706007 -154582655 + AluJo SINE Alu 1 281 -31 447 68 0 0 chr4 29706018 29706033 -154582629 + (CA)n Simple_repeat Simple_repeat 1 74 0 447 68 0 0 chr4 29706033 29706092 -154582570 + (CA)n Simple_repeat Simple_repeat 2 60 0 2505 151 5 3 chr4 29706160 29706550 -154582112 + MER89 LTR ERV1 167 557 -2 2078 135 7 0 chr4 29706711 29707014 -154581648 - AluSx SINE Alu -7 305 1 196 194 0 0 chr4 29707179 29707215 -154581447 + L2 LINE L2 3195 3230 -83 343 280 182 15 chr4 29707576 29707708 -154580954 + MIR SINE MIR 39 192 -70 1706 156 36 26 chr4 29707737 29708143 -154580519 + MER89 LTR ERV1 2 510 -49 4974 241 58 65 chr4 29708148 29709815 -154578847 + MER89-int LTR ERV1 1 1654 -5147 1658 197 67 11 chr4 29709855 29710230 -154578432 + MER89-int LTR ERV1 1650 2045 -4756 1473 214 84 49 chr4 29710231 29710601 -154578061 + MSTD LTR MaLR 1 383 -13 2173 226 39 22 chr4 29710604 29711095 -154577567 + MER89-int LTR ERV1 2033 2531 -4270 362 326 39 34 chr4 29711151 29711384 -154577278 + MER89-int LTR ERV1 139 372 -4275 2377 219 71 56 chr4 29711493 29712137 -154576525 + MER89-int LTR ERV1 2603 3256 -3545 1465 122 0 0 chr4 29712155 29712351 -154576311 + AluSg/x SINE Alu 88 283 -27 26 0 0 0 chr4 29712351 29712377 -154576285 + AT_rich Low_complexity Low_complexity 1 26 0 203 266 47 16 chr4 29712576 29712640 -154576022 + MER5A DNA MER1_type 124 189 0 2249 96 0 10 chr4 29713153 29713454 -154575208 + AluSq SINE Alu 1 298 -15 2145 253 53 42 chr4 29713474 29714459 -154574203 + L1M4 LINE L1 2204 3199 -2947 589 306 105 54 chr4 29714492 29715011 -154573651 + L2 LINE L2 2550 3123 -149 2113 128 3 0 chr4 29715011 29715308 -154573354 - AluSx SINE Alu -13 299 2 589 306 105 54 chr4 29715308 29715464 -154573198 + L2 LINE L2 3123 3270 -2 300 328 38 23 chr4 29716279 29716410 -154572252 + MIR SINE MIR 22 154 -108 3314 117 54 14 chr4 29716858 29717378 -154571284 - LTR38B LTR ERV1 -12 598 58 611 256 19 25 chr4 29718574 29718734 -154569928 + MIR SINE MIR 15 173 -89 1898 143 3 7 chr4 29718772 29719065 -154569597 + AluJo SINE Alu 1 292 -20 778 278 78 46 chr4 29719275 29719386 -154569276 + MLT1H LTR MaLR 123 229 -320 1875 177 55 3 chr4 29719386 29719713 -154568949 + MER2 DNA MER2_type 1 344 0 778 278 78 46 chr4 29719713 29720011 -154568651 + MLT1H LTR MaLR 229 545 -4 188 228 18 0 chr4 29720185 29720242 -154568420 + CT-rich Low_complexity Low_complexity 3 60 0 368 276 199 6 chr4 29720332 29720488 -154568174 + MER5A DNA MER1_type 3 188 -1 246 32 0 0 chr4 29720670 29720701 -154567961 + (TG)n Simple_repeat Simple_repeat 2 32 0 2041 134 3 3 chr4 29721287 29721586 -154567076 - AluJb SINE Alu -13 299 1 1132 227 174 8 chr4 29721957 29722122 -154566540 + L1MD2 LINE L1 5944 6080 -279 234 0 0 0 chr4 29722122 29722148 -154566514 + (CA)n Simple_repeat Simple_repeat 1 26 0 1132 227 174 8 chr4 29722148 29722339 -154566323 + L1MD2 LINE L1 6080 6359 0 1517 129 43 56 chr4 29722344 29722646 -154566016 + AluSx SINE Alu 1 298 -14 346 318 45 19 chr4 29723232 29723386 -154565276 + MER5A DNA MER1_type 9 166 -23 * 510 293 18 18 chr4 29723253 29723417 -154565245 - MER5A DNA MER1_type -22 167 4 192 77 0 0 chr4 29724507 29724533 -154564129 + (A)n Simple_repeat Simple_repeat 1 26 0 683 183 0 0 chr4 29724540 29724644 -154564018 + FLAM_A SINE Alu 21 124 -18 189 263 0 0 chr4 29724773 29724830 -154563832 - MIR SINE MIR -42 220 164 214 174 22 22 chr4 29724932 29724978 -154563684 - MIR SINE MIR -62 146 101 506 216 140 77 chr4 29725304 29725526 -154563136 + MLT1C LTR MaLR 5 240 -227 826 169 8 0 chr4 29725616 29725746 -154562916 + AluSg SINE Alu 1 131 -179 290 306 41 20 chr4 29726127 29726225 -154562437 - L2 LINE L2 0 3313 3214 1961 168 43 27 chr4 29726806 29727175 -154561487 + THE1C LTR MaLR 1 375 0 242 252 67 59 chr4 29728107 29728226 -154560436 - MER20 DNA MER1_type -18 201 82 918 150 13 7 chr4 29728452 29728605 -154560057 + FRAM SINE Alu 1 150 -26 339 248 111 0 chr4 29728648 29728765 -154559897 + MIR SINE MIR 48 177 -85 841 256 8 23 chr4 29729039 29729305 -154559357 + L1ME2 LINE L1 4936 5197 -949 1229 247 11 96 chr4 29729347 29729439 -154559223 + L1ME2 LINE L1 5743 5841 -323 2121 112 17 17 chr4 29729439 29729735 -154558927 + AluSx SINE Alu 3 298 -14 2397 94 0 0 chr4 29729735 29730033 -154558629 + AluSg SINE Alu 1 298 -12 1229 247 11 96 chr4 29730033 29730208 -154558454 + L1ME2 LINE L1 5840 5960 -204 1946 163 3 3 chr4 29730208 29730509 -154558153 + AluJb SINE Alu 1 301 -11 1229 247 11 96 chr4 29730509 29730688 -154557974 + L1ME2 LINE L1 5960 6153 -11 1449 178 82 4 chr4 29731015 29731296 -154557366 - AluJb SINE Alu -9 303 1 1748 138 55 38 chr4 29731720 29732010 -154556652 + AluSx SINE Alu 1 295 -17 306 50 0 0 chr4 29733680 29733720 -154554942 + (CA)n Simple_repeat Simple_repeat 2 41 0 307 340 61 14 chr4 29733780 29733927 -154554735 + MIR3 SINE MIR 7 160 -48 * 337 346 68 92 chr4 29733925 29734217 -154554445 - L2 LINE L2 0 3272 2988 5679 136 23 32 chr4 29734291 29734878 -154553784 - MER4D LTR ERV1 0 903 312 1849 148 3 20 chr4 29734878 29735175 -154553487 + AluJb SINE Alu 9 300 -12 2127 107 37 3 chr4 29735177 29735476 -154553186 + AluSq SINE Alu 1 309 -4 5679 136 23 32 chr4 29735476 29735796 -154552866 - MER4D LTR ERV1 -592 311 1 2942 133 25 11 chr4 29735796 29736270 -154552392 - LTR29 LTR ERV1 -5 617 137 528 327 20 39 chr4 29736448 29736702 -154551960 + MLT1L LTR MaLR 8 256 -359 2856 179 56 6 chr4 29736705 29737225 -154551437 - MER21A LTR ERV1 -14 917 372 1116 169 56 60 chr4 29737223 29737489 -154551173 - MER21A LTR ERV1 -666 265 1 * 1955 139 52 3 chr4 29737489 29737796 -154550866 + MLT2C1 LTR ERVL 25 346 -51 281 74 463 0 chr4 29737797 29737851 -154550811 - MADE1 DNA Mariner -1 79 1 270 344 79 16 chr4 29737912 29738101 -154550561 - L2 LINE L2 -437 2877 2677 1308 110 105 5 chr4 29738103 29738312 -154550350 + MER30 DNA MER1_type 1 230 0 1346 300 50 37 chr4 29738349 29738943 -154549719 + MLT1L LTR MaLR 8 609 -6 362 322 34 7 chr4 29738950 29739096 -154549566 - L2 LINE L2 -656 2658 2509 1778 192 92 32 chr4 29739982 29740267 -154548395 + MLT1C LTR MaLR 5 272 -195 1968 129 81 31 chr4 29740267 29740624 -154548038 - THE1C LTR MaLR 0 375 1 10541 120 13 55 chr4 29740625 29741704 -154546958 - THE1C-int LTR MaLR -1 1579 593 1905 100 8 8 chr4 29741704 29741963 -154546699 - AluSp SINE Alu -1 312 54 10541 120 13 55 chr4 29741963 29742530 -154546132 - THE1C-int LTR MaLR -987 593 3 1890 110 99 71 chr4 29742532 29742602 -154546060 - THE1C LTR MaLR 0 375 308 2086 124 7 20 chr4 29742602 29742900 -154545762 - AluSx SINE Alu -18 294 1 1890 110 99 71 chr4 29742900 29743194 -154545468 - THE1C LTR MaLR -67 308 1 1778 192 92 32 chr4 29743194 29743340 -154545322 + MLT1C LTR MaLR 272 467 0 1860 153 3 7 chr4 29743508 29743796 -154544866 - AluJb SINE Alu -25 287 1 36 62 0 0 chr4 29743907 29743971 -154544691 + AT_rich Low_complexity Low_complexity 1 64 0 180 311 0 0 chr4 29744079 29744124 -154544538 + L2 LINE L2 3213 3257 -15 526 266 8 31 chr4 29744361 29744489 -154544173 + MIR SINE MIR 25 149 -113 1183 124 0 0 chr4 29744756 29744937 -154543725 + AluSq SINE Alu 131 311 0 2185 136 0 132 chr4 29744982 29745481 -154543181 - Tigger2a DNA MER2_type -1 433 1 1422 197 114 57 chr4 29745537 29745706 -154542956 + MER110A LTR ERV1 22 180 -288 930 153 0 0 chr4 29745706 29745837 -154542825 + FLAM_C SINE Alu 1 131 -2 1422 197 114 57 chr4 29745837 29746088 -154542574 + MER110A LTR ERV1 180 466 -2 3081 167 65 0 chr4 29746101 29746627 -154542035 + MER68 LTR ERV1 3 562 0 282 378 91 0 chr4 29746987 29747130 -154541532 - L2 LINE L2 -206 3066 2911 554 283 47 33 chr4 29747343 29747468 -154541194 + MIR SINE MIR 13 144 -118 3220 69 0 0 chr4 29747468 29747843 -154540819 - THE1C LTR MaLR 0 375 1 554 283 47 33 chr4 29747843 29747929 -154540733 + MIR SINE MIR 144 227 -35 987 209 0 71 chr4 29748371 29748596 -154540066 + AluJo SINE Alu 3 211 -101 1658 191 17 0 chr4 29748699 29748993 -154539669 + AluJo SINE Alu 1 299 -13 767 196 38 119 chr4 29749193 29749484 -154539178 - MLT1D LTR MaLR -170 297 25 869 159 0 14 chr4 29749505 29749650 -154539012 + FLAM_C SINE Alu 1 143 0 880 198 12 77 chr4 29749692 29749940 -154538722 - LTR4 LTR ERV1 0 596 365 712 258 85 74 chr4 29750052 29750405 -154538257 - LTR4 LTR ERV1 -239 357 1 717 202 0 0 chr4 29750412 29750536 -154538126 + FRAM SINE Alu 41 164 -12 1418 110 19 0 chr4 29750726 29750935 -154537727 + LTR24C LTR ERV1 1 213 -422 * 2524 90 8 31 chr4 29750931 29751286 -154537376 - THE1B LTR MaLR -17 347 1 2090 139 82 31 chr4 29751286 29751639 -154537023 + LTR24C LTR ERV1 225 601 -34 2149 133 7 0 chr4 29751639 29751941 -154536721 + AluSx SINE Alu 1 304 -8 2090 139 82 31 chr4 29751941 29751976 -154536686 + LTR24C LTR ERV1 601 633 -2 207 296 61 76 chr4 29752084 29752216 -154536446 + L2 LINE L2 2925 3054 -218 502 263 43 62 chr4 29752499 29752708 -154535954 + MER21B LTR ERV1 508 712 -151 444 317 48 0 chr4 29752733 29752900 -154535762 + Charlie2b DNA MER1_type 233 407 -2455 322 242 0 0 chr4 29752923 29752989 -154535673 + Charlie2b DNA MER1_type 575 640 -2142 1237 209 92 31 chr4 29753017 29753103 -154535559 + Charlie2a DNA MER1_type 1466 1545 -1317 1522 176 23 33 chr4 29753103 29753404 -154535258 - AluJo SINE Alu -14 298 1 1237 209 92 31 chr4 29753404 29754014 -154534648 + Charlie2a DNA MER1_type 1545 2267 -595 2224 263 35 45 chr4 29754046 29755127 -154533535 + L1ME LINE L1 59 1127 -4953 2822 118 25 9 chr4 29755127 29755558 -154533104 + MER57-int LTR ERV1 3165 3602 -3935 2407 201 113 35 chr4 29755558 29756224 -154532438 - MER50 LTR ERV1 0 734 17 781 81 57 0 chr4 29756238 29756361 -154532301 + MER57-int LTR ERV1 3600 3729 -3808 1063 261 61 52 chr4 29756375 29756756 -154531906 + L1ME LINE L1 1174 1550 -4711 1987 145 60 23 chr4 29756756 29757107 -154531555 - THE1B LTR MaLR 0 364 1 1063 261 61 52 chr4 29757107 29757463 -154531199 + L1ME LINE L1 1550 1956 -4305 2175 125 7 0 chr4 29757463 29757760 -154530902 + AluSq SINE Alu 1 299 -14 1063 261 61 52 chr4 29757760 29757964 -154530698 + L1ME LINE L1 1956 2157 -4104 1351 108 0 6 chr4 29757970 29758146 -154530516 + AluSq SINE Alu 1 175 -138 1973 152 43 137 chr4 29758146 29758751 -154529911 - LTR34 LTR ERV1 -151 548 1 914 240 131 3 chr4 29758751 29758822 -154529840 + L1ME LINE L1 2825 2886 -3194 1541 182 6 59 chr4 29758822 29759146 -154529516 + AluJo SINE Alu 1 307 -5 914 240 131 3 chr4 29759146 29759432 -154529230 + L1ME LINE L1 2886 3228 -2852 221 202 173 0 chr4 29759435 29759539 -154529123 - L2 LINE L2 -76 3237 3116 186 43 0 0 chr4 29759723 29759746 -154528916 + (CCG)n Simple_repeat Simple_repeat 2 24 0 669 137 16 48 chr4 29761684 29761808 -154526854 + FLAM_C SINE Alu 8 127 -16 22 0 0 0 chr4 29761938 29761960 -154526702 + AT_rich Low_complexity Low_complexity 1 22 0 271 57 0 170 chr4 29761962 29762051 -154526611 + Alu SINE Alu 239 318 0 2126 110 0 10 chr4 29762064 29762355 -154526307 + AluSx SINE Alu 5 292 -20 278 328 86 0 chr4 29763029 29763145 -154525517 - MIR SINE MIR 0 262 137 1834 128 53 0 chr4 29763186 29763452 -154525210 - AluSq SINE Alu -33 280 1 358 125 0 0 chr4 29763482 29763530 -154525132 + Alu SINE Alu 1 48 -254 926 148 0 56 chr4 29763534 29763696 -154524966 + FRAM SINE Alu 12 164 -12 193 179 8 0 chr4 29763696 29763738 -154524924 - MIR SINE MIR -89 119 75 6882 93 182 50 chr4 29764227 29766472 -154522190 - Harlequin LTR ERV1 0 8399 505 839 155 22 84 chr4 29766470 29766792 -154521870 - Harlequin LTR ERV1 -5755 1141 840 * 36278 80 35 5 chr4 29766793 29771576 -154517086 - Harlequin LTR ERV1 -3455 4944 17 329 100 140 0 chr4 29771576 29771599 -154517063 - Harlequin LTR ERV1 -8331 68 39 4305 101 217 102 chr4 29771599 29772965 -154515697 - pTR5 LTR ERV1 0 2438 172 253 311 53 99 chr4 29773166 29773449 -154515213 - L2 LINE L2 -6 3266 2997 1982 151 7 0 chr4 29773502 29773793 -154514869 - AluJo SINE Alu -15 297 5 323 245 99 80 chr4 29774093 29774305 -154514357 - L2 LINE L2 -6 3307 3092 9974 65 13 62 chr4 29774607 29776047 -154512615 - SVA Other Other -3 1383 14 1765 106 12 4 chr4 29776057 29776313 -154512349 + L1PA12 LINE L1 5808 6065 -103 389 78 0 0 chr4 29776342 29776393 -154512269 + U2 snRNA snRNA 1 51 -137 693 84 84 0 chr4 29776393 29776500 -154512162 + L1PA13 LINE L1 6048 6163 0 1410 218 77 20 chr4 29776506 29776947 -154511715 - L2 LINE L2 -625 2689 2224 396 250 8 16 chr4 29777001 29777125 -154511537 - L2 LINE L2 -1845 1469 1347 1082 264 138 9 chr4 29777125 29777568 -154511094 - L2 LINE L2 -2091 1223 724 2178 94 3 10 chr4 29777607 29777930 -154510732 - AluSq SINE Alu 0 321 1 1729 156 7 20 chr4 29778414 29778716 -154509946 - AluJo SINE Alu -14 298 1 2002 107 43 0 chr4 29779583 29779863 -154508799 - AluSx SINE Alu -20 292 1 318 326 92 0 chr4 29779992 29780133 -154508529 - L2 LINE L2 0 3313 3160 2517 63 3 0 chr4 29780216 29780516 -154508146 - AluY SINE Alu -10 301 1 691 209 0 15 chr4 29781434 29781568 -154507094 - FLAM_A SINE Alu -1 132 1 507 174 0 31 chr4 29781617 29781715 -154506947 - AluJb SINE Alu -81 231 137 1727 185 24 0 chr4 29781725 29782022 -154506640 - AluJb SINE Alu -8 304 1 1760 171 13 26 chr4 29782862 29783167 -154505495 - AluJb SINE Alu -11 301 1 303 234 203 0 chr4 29783167 29783295 -154505367 + MIR SINE MIR 97 250 -12 2219 108 7 7 chr4 29784019 29784315 -154504347 - AluSx SINE Alu -16 296 1 27 0 0 0 chr4 29784321 29784348 -154504314 + AT_rich Low_complexity Low_complexity 1 27 0 25 51 0 0 chr4 29784374 29784413 -154504249 + AT_rich Low_complexity Low_complexity 1 39 0 1307 86 27 16 chr4 29785431 29785617 -154503045 + MER30 DNA MER1_type 43 230 0 675 259 12 6 chr4 29785652 29785822 -154502840 + MER5A DNA MER1_type 19 189 0 451 222 19 0 chr4 29786030 29786138 -154502524 + MIR SINE MIR 147 256 -6 303 28 0 0 chr4 29786402 29786433 -154502229 + (CA)n Simple_repeat Simple_repeat 1 67 0 303 28 0 0 chr4 29786433 29786469 -154502193 + (CA)n Simple_repeat Simple_repeat 2 37 0 846 158 0 0 chr4 29786666 29786799 -154501863 - FLAM_C SINE Alu 0 133 1 639 191 191 0 chr4 29787429 29787617 -154501045 + L1ME2 LINE L1 5804 6027 -137 314 218 13 0 chr4 29787632 29787710 -154500952 + L1MA10 LINE L1 6247 6325 -9 560 153 0 0 chr4 29787806 29787891 -154500771 + AluJ/FLAM SINE Alu 2 86 -226 1116 162 0 0 chr4 29787980 29788147 -154500515 + AluJb SINE Alu 131 297 -15 1857 135 94 15 chr4 29788679 29789019 -154499643 - THE1C LTR MaLR 0 375 9 23 0 0 0 chr4 29789461 29789484 -154499178 + AT_rich Low_complexity Low_complexity 1 23 0 26 50 0 0 chr4 29789896 29789936 -154498726 + AT_rich Low_complexity Low_complexity 1 40 0 1971 143 3 10 chr4 29790382 29790683 -154497979 + AluJb SINE Alu 1 299 -13 2403 97 3 0 chr4 29790706 29791014 -154497648 + AluSq SINE Alu 1 309 -4 395 251 152 81 chr4 29791372 29791779 -154496883 - L1M4 LINE L1 -3235 2911 2476 989 161 6 12 chr4 29791980 29792141 -154496521 - AluJo SINE Alu -32 280 121 189 147 0 0 chr4 29792519 29792553 -154496109 + (T)n Simple_repeat Simple_repeat 1 34 0 236 228 53 0 chr4 29792665 29792722 -154495940 + L2 LINE L2 3213 3272 0 * 344 343 77 14 chr4 29792721 29793007 -154495655 - L2 LINE L2 -1147 2167 1864 849 174 0 0 chr4 29793201 29793333 -154495329 + FRAM SINE Alu 1 132 -44 909 191 0 13 chr4 29793733 29793885 -154494777 + FRAM SINE Alu 2 151 -15 2454 80 0 7 chr4 29795148 29795450 -154493212 + AluSq SINE Alu 1 300 -13 587 61 12 0 chr4 29795594 29795676 -154492986 - AluY SINE Alu -227 84 2 2314 113 0 6 chr4 29795996 29796307 -154492355 - AluSg SINE Alu -1 309 1 373 227 118 0 chr4 29796605 29796724 -154491938 - L2 LINE L2 0 3313 3181 21 0 0 0 chr4 29797498 29797519 -154491143 + AT_rich Low_complexity Low_complexity 1 21 0 1827 157 7 14 chr4 29797524 29797818 -154490844 + AluJb SINE Alu 3 294 -18 1063 181 0 16 chr4 29798182 29798370 -154490292 + FAM SINE Alu 1 49 0 1010 170 19 0 chr4 29798381 29798540 -154490122 + FRAM SINE Alu 1 162 -14 2030 119 0 30 chr4 29800464 29800766 -154487896 - AluSx SINE Alu -19 293 1 1710 121 8 20 chr4 29801117 29801398 -154487264 + AluSx SINE Alu 36 313 0 676 227 195 16 chr4 29801593 29801901 -154486761 + MLT1J2 LTR MaLR 67 429 -21 485 138 43 32 chr4 29802058 29802152 -154486510 + AluJ/FLAM SINE Alu 2 96 -216 1674 150 19 0 chr4 29802255 29802555 -154486107 + AluJo SINE Alu 13 317 0 807 155 9 0 chr4 29802684 29802800 -154485862 + FLAM_C SINE Alu 2 118 -25 279 79 0 0 chr4 29802800 29802838 -154485824 + (CAAT)n Simple_repeat Simple_repeat 1 38 0 833 249 24 19 chr4 29803270 29803479 -154485183 + L2 LINE L2 3104 3313 0 321 89 0 0 chr4 29803661 29803706 -154484956 + (TG)n Simple_repeat Simple_repeat 2 46 0 2407 108 0 0 chr4 29806061 29806367 -154482295 - AluSx SINE Alu -6 306 1 1705 149 43 11 chr4 29807350 29807632 -154481030 + AluJo SINE Alu 4 294 -18 892 121 0 8 chr4 29807635 29807759 -154480903 + FLAM_C SINE Alu 1 123 -20 249 232 0 0 chr4 29807799 29807855 -154480807 + L1ME2 LINE L1 4006 4061 -2085 1468 214 51 37 chr4 29807857 29808277 -154480385 - MLT1D LTR MaLR -1 504 88 2659 210 105 50 chr4 29808331 29809414 -154479248 + L1ME2 LINE L1 4058 5293 -885 1895 136 36 0 chr4 29809414 29809693 -154478969 + AluSx SINE Alu 1 289 -23 2659 210 105 50 chr4 29809693 29809844 -154478818 + L1ME2 LINE L1 5293 5434 -744 1389 215 123 12 chr4 29809848 29810253 -154478409 + L1ME2 LINE L1 5594 6043 -121 3554 118 2 29 chr4 29810253 29810771 -154477891 - L1PA10 LINE L1 -9 6474 5971 2344 73 0 10 chr4 29810772 29811075 -154477587 + AluY SINE Alu 1 300 -11 22410 177 14 17 chr4 29811184 29815103 -154473559 - L1PA10 LINE L1 -1251 5210 1287 180 77 0 0 chr4 29815103 29815129 -154473533 + (TTG)n Simple_repeat Simple_repeat 2 27 0 22410 177 14 17 chr4 29815129 29815724 -154472938 - L1PA10 LINE L1 -5174 1287 692 908 234 15 54 chr4 29815732 29815993 -154472669 - L1PA10 LINE L1 -5366 509 259 808 198 115 10 chr4 29816428 29816620 -154472042 - L1PA10 LINE L1 -5656 219 8 323 266 50 0 chr4 29816619 29816738 -154471924 + L1ME1 LINE L1 6037 6164 -6 * 1477 179 0 12 chr4 29816794 29817084 -154471578 - AluJb SINE Alu 0 312 43 642 299 15 20 chr4 29817151 29817355 -154471307 + L1ME3A LINE L1 5681 5883 -287 1661 154 7 25 chr4 29817581 29817885 -154470777 + AluJb SINE Alu 9 307 0 1489 139 5 0 chr4 29817898 29818114 -154470548 + AluSg/x SINE Alu 85 301 -11 1759 151 148 20 chr4 29818300 29818644 -154470018 - MLT1B LTR MaLR -2 388 1 2134 109 0 55 chr4 29819451 29819780 -154468882 - AluSx SINE Alu -1 311 1 303 283 90 0 chr4 29819850 29819995 -154468667 - L1MC5 LINE L1 -542 7419 7262 4652 153 72 30 chr4 29820255 29820339 -154468323 - L1MA9 LINE L1 -22 6290 6211 234 0 0 0 chr4 29820339 29820365 -154468297 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2115 102 29 0 chr4 29820365 29820639 -154468023 - AluSx SINE Alu -30 282 1 4652 153 72 30 chr4 29820639 29820672 -154467990 - L1MA9 LINE L1 -101 6211 6181 315 0 0 0 chr4 29820672 29820707 -154467955 + (TG)n Simple_repeat Simple_repeat 2 36 0 4652 153 72 30 chr4 29820707 29820749 -154467913 - L1MA9 LINE L1 -131 6181 6142 1707 201 0 10 chr4 29820749 29821063 -154467599 - AluJo SINE Alu -1 311 1 4652 153 72 30 chr4 29821063 29821093 -154467569 - L1MA9 LINE L1 -170 6142 6115 1714 189 3 25 chr4 29821093 29821411 -154467251 + AluJb SINE Alu 2 312 0 4652 153 72 30 chr4 29821411 29822693 -154465969 - L1MA9 LINE L1 -197 6115 4758 22 0 0 0 chr4 29822916 29822938 -154465724 + AT_rich Low_complexity Low_complexity 1 22 0 265 302 82 40 chr4 29823200 29823351 -154465311 + MIR SINE MIR 34 192 -67 2532 59 0 3 chr4 29824671 29824975 -154463687 - AluY SINE Alu -8 303 1 321 327 88 9 chr4 29824995 29825026 -154463636 - MIR SINE MIR -26 236 209 1499 261 54 56 chr4 29825026 29825544 -154463118 + LTR33 LTR ERVL 5 521 0 321 327 88 9 chr4 29825544 29825729 -154462933 - MIR SINE MIR -53 209 3 382 187 166 0 chr4 29825773 29825912 -154462750 - MER20B DNA MER1_type -30 753 592 571 236 81 0 chr4 29825913 29826036 -154462626 + MER7C DNA MER2_type 2 134 -468 953 226 3 132 chr4 29826036 29826354 -154462308 - AluSp SINE Alu -9 304 28 2944 135 11 19 chr4 29826354 29826829 -154461833 + MER7C DNA MER2_type 131 601 -1 2480 52 0 29 chr4 29826971 29827280 -154461382 - AluY SINE Alu -11 300 1 255 247 68 96 chr4 29827638 29827784 -154460878 + MLT1H LTR MaLR 406 547 -2 * 1409 256 97 11 chr4 29827784 29828228 -154460434 - MER20B DNA MER1_type -275 508 27 186 302 136 84 chr4 29828308 29828349 -154460313 - L2 LINE L2 -4 3268 3231 1579 156 28 45 chr4 29828349 29828637 -154460025 - AluJb SINE Alu -18 294 12 186 302 136 84 chr4 29828637 29828903 -154459759 - L2 LINE L2 -41 3231 2945 822 215 47 33 chr4 29829031 29829245 -154459417 - MIR SINE MIR -1 261 45 266 153 0 83 chr4 29829498 29829570 -154459092 + Charlie5 DNA MER1_type 2544 2609 -3 490 88 0 0 chr4 29829570 29829638 -154459024 - L1PB4 LINE L1 0 6156 6089 597 202 65 73 chr4 29829755 29829806 -154458856 - MLT1J LTR MaLR -22 489 439 2376 65 24 0 chr4 29829806 29830097 -154458565 - AluY SINE Alu -13 298 1 2172 122 3 6 chr4 29830097 29830408 -154458254 - AluSx SINE Alu -2 310 1 597 202 65 73 chr4 29830408 29830642 -154458020 - MLT1J LTR MaLR -70 441 166 386 199 160 51 chr4 29830652 29830808 -154457854 + LTR16A1 LTR ERVL 165 337 -120 719 196 119 55 chr4 29830843 29831078 -154457584 - MLT1C LTR MaLR -165 302 53 2138 123 3 3 chr4 29831135 29831435 -154457227 - AluSx SINE Alu -7 305 6 432 0 0 0 chr4 29831495 29831543 -154457119 + (CA)n Simple_repeat Simple_repeat 2 49 0 699 231 122 31 chr4 29832321 29832550 -154456112 - MLT1K LTR MaLR -1 587 338 423 275 78 78 chr4 29832660 29832846 -154455816 + MLT1H LTR MaLR 133 321 -228 1101 31 78 0 chr4 29832846 29832974 -154455688 - MER85 DNA T2_type -1 138 1 423 275 78 78 chr4 29832974 29833005 -154455657 + MLT1H LTR MaLR 320 350 -199 290 231 26 26 chr4 29833191 29833269 -154455393 - MLT1K LTR MaLR -477 111 34 2163 112 0 22 chr4 29833422 29833735 -154454927 + AluSg SINE Alu 3 308 -2 1360 179 108 54 chr4 29833826 29834251 -154454411 - LTR7 LTR ERV1 -2 448 1 242 226 19 0 chr4 29834892 29834945 -154453717 - MER4D LTR ERV1 -72 800 747 889 241 34 30 chr4 29835271 29835536 -154453126 - L1M4 LINE L1 -1380 4766 4501 2459 64 0 49 chr4 29835537 29835864 -154452798 - AluY SINE Alu 0 311 1 845 144 0 0 chr4 29835900 29836025 -154452637 - FLAM_C SINE Alu -18 125 1 834 220 57 40 chr4 29836030 29836326 -154452336 - L1M4 LINE L1 -1663 4483 4183 1457 156 42 26 chr4 29837596 29837903 -154450759 + AluJb SINE Alu 1 312 0 1670 207 23 20 chr4 29838430 29838783 -154449879 - MLT1A1 LTR MaLR -11 354 1 354 212 92 13 chr4 29839005 29839141 -154449521 - L1M2 LINE L1 -358 5816 5666 4891 176 34 6 chr4 29839497 29839704 -154448958 - L1MB4 LINE L1 -1 6179 5979 1790 161 3 25 chr4 29839704 29840020 -154448642 - AluJo SINE Alu -3 309 1 4891 176 34 6 chr4 29840020 29840924 -154447738 - L1MB4 LINE L1 -201 5979 5040 317 333 74 0 chr4 29841133 29841268 -154447394 + MER117 DNA MER1_type 5 149 -48 2166 121 23 0 chr4 29841431 29841736 -154446926 + AluSx SINE Alu 1 312 0 243 282 230 0 chr4 29841741 29841915 -154446747 - MIR SINE MIR -17 245 32 222 37 0 0 chr4 29842655 29842682 -154445980 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 2589 49 0 7 chr4 29842814 29843122 -154445540 + AluY SINE Alu 1 306 -5 930 210 19 15 chr4 29844633 29844838 -154443824 - HsTC2 DNA Tc2 -1298 600 395 296 148 20 40 chr4 29844860 29844961 -154443701 + CT-rich Low_complexity Low_complexity 1 99 0 1116 197 167 23 chr4 29844963 29845083 -154443579 - AluJo SINE Alu 0 302 201 180 0 0 0 chr4 29845083 29845103 -154443559 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2186 96 0 0 chr4 29845103 29845384 -154443278 - AluSx SINE Alu -31 281 1 1116 197 167 23 chr4 29845384 29845526 -154443136 - AluJo SINE Alu -100 202 1 802 253 177 7 chr4 29845529 29845829 -154442833 - HsTC2 DNA Tc2 -1544 354 4 479 191 0 0 chr4 29845872 29845961 -154442701 - AluJ/FRAM SINE Alu -3 309 221 1101 163 23 20 chr4 29845961 29846179 -154442483 - L1MB7 LINE L1 -92 6092 5879 390 71 11 153 chr4 29846202 29846224 -154442438 + L1MB7 LINE L1 6102 6125 -53 2043 151 0 10 chr4 29846224 29846529 -154442133 - AluSx SINE Alu -10 302 1 390 71 11 153 chr4 29846529 29846591 -154442071 + L1MB7 LINE L1 6125 6178 0 239 260 41 0 chr4 29846722 29846795 -154441867 - L1MC4 LINE L1 -612 7430 7355 656 242 95 40 chr4 29846849 29847101 -154441561 - L1MC5 LINE L1 -728 7233 6968 367 277 7 57 chr4 29847253 29847394 -154441268 + MER94 DNA DNA 1 134 0 3039 210 63 53 chr4 29847438 29847725 -154440937 - L1ME1 LINE L1 0 6166 5883 2151 108 9 29 chr4 29847725 29848040 -154440622 - AluSc SINE Alu 0 309 1 3039 210 63 53 chr4 29848040 29848688 -154439974 - L1ME1 LINE L1 -283 5883 5243 2397 36 23 7 chr4 29848688 29848990 -154439672 + AluY SINE Alu 1 307 -4 3039 210 63 53 chr4 29848990 29849043 -154439619 - L1ME1 LINE L1 -923 5243 5192 1662 114 18 0 chr4 29849043 29849270 -154439392 - AluSx SINE Alu -65 247 17 3039 210 63 53 chr4 29849270 29849355 -154439307 - L1ME1 LINE L1 -974 5192 5127 3902 206 36 103 chr4 29849359 29849714 -154438948 - L1M4 LINE L1 -956 5190 4813 1858 228 66 29 chr4 29849714 29850201 -154438461 - MLT1D LTR MaLR 0 505 1 3902 206 36 103 chr4 29850201 29851204 -154437458 - L1M4 LINE L1 -1333 4813 3972 1691 178 27 7 chr4 29851204 29851502 -154437160 - AluJo SINE Alu -8 304 1 3902 206 36 103 chr4 29851502 29851877 -154436785 - L1M4 LINE L1 -2174 3972 3573 445 235 104 97 chr4 29851880 29851966 -154436696 - L1MEc LINE L1 -4850 1576 1492 2092 136 0 0 chr4 29851966 29852260 -154436402 - AluSx SINE Alu -18 294 1 445 235 104 97 chr4 29852260 29852304 -154436358 - L1MEc LINE L1 -4934 1492 1450 1956 155 0 3 chr4 29852304 29852601 -154436061 - AluJb SINE Alu -14 298 3 445 235 104 97 chr4 29852601 29852626 -154436036 - L1MEc LINE L1 -4976 1450 1427 1880 179 3 0 chr4 29852626 29852928 -154435734 + AluJb SINE Alu 1 303 -9 445 235 104 97 chr4 29852928 29853060 -154435602 - L1MEc LINE L1 -4999 1427 1303 734 249 32 60 chr4 29853094 29853248 -154435414 - L1MEc LINE L1 -5231 1376 1219 2507 75 0 3 chr4 29853248 29853554 -154435108 - AluSc SINE Alu -4 305 1 734 249 32 60 chr4 29853554 29853708 -154434954 - L1MEc LINE L1 -5388 1219 1083 1997 152 3 7 chr4 29853708 29854011 -154434651 - AluSx SINE Alu -10 302 1 734 249 32 60 chr4 29854011 29854166 -154434496 - L1MEc LINE L1 -5524 1083 925 475 208 108 15 chr4 29854227 29854357 -154434305 + MER58B DNA MER1_type 197 338 -3 1297 219 65 78 chr4 29854359 29855022 -154433640 - L1MEc LINE L1 -5705 902 249 2015 141 0 7 chr4 29855031 29855328 -154433334 - AluJo SINE Alu -17 295 1 2021 147 3 0 chr4 29855747 29856040 -154432622 + AluSx SINE Alu 1 294 -18 505 214 57 0 chr4 29856129 29856269 -154432393 + L1M4 LINE L1 3573 3720 -2426 1584 107 47 0 chr4 29856370 29856585 -154432077 + AluSg/x SINE Alu 78 302 -10 1405 195 62 0 chr4 29859107 29859379 -154429283 - AluJo SINE Alu -13 299 11 2072 132 0 3 chr4 29859433 29859722 -154428940 + AluSx SINE Alu 1 288 -24 1964 150 3 3 chr4 29859747 29860041 -154428621 + AluJb SINE Alu 1 294 -18 833 179 70 35 chr4 29860286 29860627 -154428035 - L1MB7 LINE L1 -19 6165 5781 2030 145 0 0 chr4 29860756 29861053 -154427609 - AluSx SINE Alu -13 299 3 846 251 118 5 chr4 29861064 29861267 -154427395 - MIR SINE MIR -14 248 23 729 280 34 45 chr4 29861488 29861842 -154426820 - MLT1K LTR MaLR -63 525 176 1891 163 0 10 chr4 29862369 29862663 -154425999 - AluJb SINE Alu -21 291 1 2679 146 54 14 chr4 29862679 29863179 -154425483 - L1MB7 LINE L1 -19 6165 5646 2118 127 26 47 chr4 29863179 29863566 -154425096 - MLT1B LTR MaLR -5 385 7 3928 172 88 4 chr4 29863567 29864142 -154424520 - L1MB7 LINE L1 -538 5646 5120 2325 78 10 0 chr4 29864142 29864435 -154424227 - AluY SINE Alu -15 296 1 3928 172 88 4 chr4 29864435 29865051 -154423611 - L1MB7 LINE L1 -1064 5120 4358 772 175 115 11 chr4 29865099 29865282 -154423380 + Tigger2a DNA MER2_type 1 202 -232 480 157 22 22 chr4 29865282 29865371 -154423291 - FLAM SINE Alu -17 126 38 1085 111 116 28 chr4 29865371 29865519 -154423143 + Tigger2a DNA MER2_type 200 374 -2334 2277 156 45 26 chr4 29865519 29865937 -154422725 + MSTB LTR MaLR 1 426 0 1085 111 116 28 chr4 29865937 29866004 -154422658 + Tigger2a DNA MER2_type 374 434 0 501 170 20 0 chr4 29866007 29866107 -154422555 - L1MB2 LINE L1 -28 6143 6042 329 261 148 21 chr4 29867569 29867711 -154420951 + L3b LINE CR1 1243 1402 -181 951 264 46 4 chr4 29867750 29867989 -154420673 - MIR SINE MIR 0 262 14 346 307 193 8 chr4 29868274 29868512 -154420150 + L1MC/D LINE L1 5260 5541 -2267 2794 24 9 0 chr4 29868531 29868914 -154419748 + L1PA3 LINE L1 5791 6176 0 1824 182 0 0 chr4 29869074 29869370 -154419292 - AluJb SINE Alu -16 296 1 292 327 101 30 chr4 29870076 29870379 -154418283 + L2 LINE L2 2749 3069 -203 570 168 0 0 chr4 29870411 29870512 -154418150 + L1MC1 LINE L1 6233 6333 0 336 238 104 74 chr4 29870581 29870850 -154417812 + Charlie7 DNA MER1_type 472 748 -1864 565 193 77 50 chr4 29870855 29871036 -154417626 + Charlie7 DNA MER1_type 2108 2293 -319 23 0 0 0 chr4 29872576 29872599 -154416063 + AT_rich Low_complexity Low_complexity 1 23 0 2002 143 24 0 chr4 29872690 29873026 -154415636 - MER2 DNA MER2_type 0 344 1 498 244 17 17 chr4 29874181 29874300 -154414362 - L2 LINE L2 -2 3270 3152 2133 113 3 27 chr4 29874517 29874817 -154413845 - AluSx SINE Alu -3 309 17 430 226 226 13 chr4 29875087 29875246 -154413416 + MIR SINE MIR 49 241 -21 221 247 14 68 chr4 29875448 29875521 -154413141 - MIR SINE MIR -123 85 17 267 384 46 13 chr4 29876104 29876255 -154412407 + MER5A DNA MER1_type 34 189 0 2045 133 7 23 chr4 29876677 29876979 -154411683 - AluSx SINE Alu -15 297 1 330 294 17 17 chr4 29877396 29877573 -154411089 - L1ME LINE L1 -355 5766 5590 203 361 0 0 chr4 29877845 29877906 -154410756 + L2 LINE L2 3212 3272 0 * 428 309 184 10 chr4 29877896 29878097 -154410565 + MIR SINE MIR 6 241 -21 462 62 0 186 chr4 29878234 29878331 -154410331 + MADE1 DNA Mariner 2 80 0 873 114 0 23 chr4 29878931 29879062 -154409600 - FLAM_C SINE Alu -5 128 1 376 344 53 13 chr4 29879424 29879575 -154409087 + MIR3 SINE MIR 3 159 -49 301 244 165 8 chr4 29879577 29879704 -154408958 + MER117 DNA MER1_type 2 148 -49 224 345 126 0 chr4 29880209 29880296 -154408366 + L2 LINE L2 3159 3256 -16 1477 286 142 21 chr4 29881151 29881801 -154406861 - L3 LINE CR1 -7 1570 843 182 250 56 69 chr4 29882042 29882071 -154406591 + L3 LINE CR1 463 491 -1086 1034 159 74 0 chr4 29882071 29882247 -154406415 - MER5A DNA MER1_type 0 189 1 182 250 56 69 chr4 29882247 29882289 -154406373 + L3 LINE CR1 491 533 -1044 246 279 29 0 chr4 29882512 29882580 -154406082 - MIR SINE MIR -26 236 167 2372 114 14 46 chr4 29882892 29883259 -154405403 + LTR18A LTR ERVL 3 357 0 2643 191 23 19 chr4 29883285 29883809 -154404853 + HERVL18 LTR ERVL 9 534 -5513 2018 208 63 9 chr4 29883778 29884220 -154404442 + HERVL18 LTR ERVL 1149 1614 -4433 * 259 57 0 0 chr4 29884218 29884253 -154404409 + HERVL18 LTR ERVL 1776 1810 -4237 * 1157 112 77 2 chr4 29884252 29884509 -154404153 + HERVL18 LTR ERVL 2119 2452 -3595 * 4826 177 12 5 chr4 29884508 29885355 -154403307 + HERVL18 LTR ERVL 2720 3572 -2475 643 128 11 0 chr4 29885365 29885459 -154403203 + HERVL18 LTR ERVL 4394 4488 -1559 514 172 30 0 chr4 29885518 29885617 -154403045 + HERVL18 LTR ERVL 5946 6047 0 2185 129 13 76 chr4 29885618 29885999 -154402663 + LTR18A LTR ERVL 1 357 0 21 89 0 0 chr4 29886666 29886722 -154401940 + AT_rich Low_complexity Low_complexity 1 56 0 605 155 54 47 chr4 29886921 29887069 -154401593 - MIR SINE MIR 0 262 114 3557 130 26 16 chr4 29887103 29887719 -154400943 - L1MC1 LINE L1 0 6333 5712 326 303 112 13 chr4 29888126 29888278 -154400384 + L1ME3A LINE L1 5989 6155 -15 344 276 0 0 chr4 29888448 29888524 -154400138 - MIR3 SINE MIR -24 184 109 33 43 0 0 chr4 29888662 29888709 -154399953 + AT_rich Low_complexity Low_complexity 1 47 0 2434 69 0 3 chr4 29890571 29890876 -154397786 - AluY SINE Alu -7 304 1 2331 112 0 0 chr4 29893690 29893994 -154394668 - AluSx SINE Alu -8 304 1 30 27 0 0 chr4 29894259 29894296 -154394366 + AT_rich Low_complexity Low_complexity 1 37 0 323 253 126 77 chr4 29894456 29894638 -154394024 + MIR SINE MIR 2 192 -70 2002 138 3 0 chr4 29895553 29895842 -154392820 - AluSx SINE Alu -22 290 1 199 327 97 12 chr4 29896618 29896754 -154391908 + L3b LINE CR1 1287 1441 -142 2847 131 35 33 chr4 29896754 29897243 -154391419 - LTR2B LTR ERV1 0 490 1 199 327 97 12 chr4 29897243 29897271 -154391391 + L3b LINE CR1 1441 1465 -118 1932 82 47 72 chr4 29898251 29898570 -154390092 + AluSq SINE Alu 1 311 -2 252 263 109 0 chr4 29898811 29898948 -154389714 - L1ME LINE L1 -295 5826 5675 1259 85 149 5 chr4 29899212 29899413 -154389249 - MER30 DNA MER1_type 0 230 1 2011 58 0 149 chr4 29900327 29900675 -154387987 - AluY SINE Alu -15 296 1 404 223 89 27 chr4 29900796 29900908 -154387754 - MER5B DNA MER1_type -14 164 46 390 249 22 50 chr4 29901226 29901407 -154387255 + (CCCCG)n Simple_repeat Simple_repeat 4 179 0 3526 261 121 16 chr4 29902757 29904017 -154384645 - L2 LINE L2 -1772 1542 150 358 318 9 0 chr4 29904185 29904292 -154384370 - MIR SINE MIR -68 140 33 22 35 0 0 chr4 29905467 29905496 -154383166 + AT_rich Low_complexity Low_complexity 1 29 0 1607 148 0 79 chr4 29905567 29905872 -154382790 - AluSx SINE Alu -31 281 1 272 128 26 0 chr4 29906035 29906074 -154382588 + AluJo/FLAM SINE Alu 76 115 -187 848 136 7 21 chr4 29906076 29906216 -154382446 - AluJb SINE Alu -174 138 1 2069 131 3 7 chr4 29906986 29907292 -154381370 + AluSg SINE Alu 1 305 -5 1217 120 0 6 chr4 29907784 29907959 -154380703 + AluSc SINE Alu 135 308 -1 230 223 204 0 chr4 29907960 29908063 -154380599 - Charlie5 DNA MER1_type -2238 374 251 1918 140 6 22 chr4 29908068 29908383 -154380279 + AluSx SINE Alu 1 310 -2 2477 59 0 50 chr4 29909030 29909352 -154379310 - AluY SINE Alu -5 306 1 222 37 0 0 chr4 29909484 29909511 -154379151 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 29 60 0 0 chr4 29909716 29909766 -154378896 + AT_rich Low_complexity Low_complexity 1 50 0 2096 121 13 0 chr4 29909799 29910104 -154378558 + AluSq SINE Alu 1 309 -4 243 282 230 0 chr4 29910540 29910714 -154377948 + MIR SINE MIR 32 245 -17 1757 149 28 0 chr4 29910718 29911007 -154377655 - AluSx SINE Alu 0 312 16 2047 133 3 0 chr4 29911517 29911811 -154376851 - AluSx SINE Alu -13 299 5 242 188 21 94 chr4 29911811 29911907 -154376755 + LTR33A LTR ERVL 434 522 -1 324 305 38 9 chr4 29911924 29912029 -154376633 - L2 LINE L2 0 3313 3206 7328 159 74 32 chr4 29912059 29912120 -154376542 - Charlie5 DNA MER1_type 0 2624 2567 2371 88 3 0 chr4 29912120 29912415 -154376247 + AluSx SINE Alu 1 296 -16 7328 159 74 32 chr4 29912415 29913145 -154375517 - Charlie5 DNA MER1_type -57 2567 1869 1895 173 0 3 chr4 29913145 29913457 -154375205 - AluJb SINE Alu -1 311 1 7328 159 74 32 chr4 29913457 29914302 -154374360 - Charlie5 DNA MER1_type -755 1869 918 1357 101 5 29 chr4 29914496 29914703 -154373959 + AluSg/x SINE Alu 73 274 -36 330 26 0 0 chr4 29914704 29914743 -154373919 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 578 313 13 22 chr4 29915342 29915566 -154373096 - MIR SINE MIR -40 222 1 837 130 0 0 chr4 29915567 29915690 -154372972 - AluJ SINE Alu -7 305 183 884 133 39 0 chr4 29915700 29915828 -154372834 - AluJ SINE Alu -169 133 1 1858 142 0 28 chr4 29915841 29916150 -154372512 - AluSx SINE Alu 0 301 1 409 282 53 18 chr4 29916286 29916456 -154372206 + MIR SINE MIR 33 208 -54 1754 167 103 42 chr4 29916566 29916973 -154371689 - MLT1C LTR MaLR 0 467 36 1300 158 5 5 chr4 29916974 29917183 -154371479 - AluJb SINE Alu -9 303 95 352 103 17 35 chr4 29917285 29917343 -154371319 - LTR6A LTR ERV1 -505 59 3 572 196 51 38 chr4 29917426 29917584 -154371078 + MER106B DNA MER1_type 897 1056 -3 1490 134 0 13 chr4 29917746 29917769 -154370893 - AluSg/x SINE Alu 0 312 290 1488 28 0 0 chr4 29917769 29917946 -154370716 + (TCTCC)n Simple_repeat Simple_repeat 2 178 0 198 0 0 0 chr4 29917953 29917975 -154370687 + (TTTTC)n Simple_repeat Simple_repeat 4 25 0 1490 134 0 13 chr4 29917975 29918174 -154370488 - AluSg/x SINE Alu -28 284 85 192 40 0 0 chr4 29918293 29918318 -154370344 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 563 128 22 172 chr4 29918329 29918509 -154370153 - L2 LINE L2 -50 3263 3111 1567 156 28 38 chr4 29918530 29918850 -154369812 + L1MC2 LINE L1 6025 6341 -3 282 29 0 0 chr4 29918871 29918906 -154369756 + (A)n Simple_repeat Simple_repeat 1 35 0 223 284 21 84 chr4 29919639 29919734 -154368928 - L2 LINE L2 -56 3216 3128 1382 231 46 9 chr4 29919797 29919975 -154368687 + MLT1A2 LTR MaLR 1 171 -203 243 0 0 0 chr4 29919975 29920002 -154368660 + (TC)n Simple_repeat Simple_repeat 2 28 0 1382 231 46 9 chr4 29920002 29920173 -154368489 + MLT1A2 LTR MaLR 171 363 -11 330 340 51 7 chr4 29920615 29920762 -154367900 + MIR SINE MIR 23 179 -29 803 226 12 0 chr4 29920763 29920927 -154367735 + L1ME LINE L1 5504 5669 -493 2243 89 7 0 chr4 29920928 29921346 -154367316 + AluSp SINE Alu 1 420 0 6009 113 13 11 chr4 29921353 29922537 -154366125 + L1MA3 LINE L1 4859 6139 -166 756 104 0 0 chr4 29922540 29922636 -154366026 + AluJ/FLAM SINE Alu 5 100 -212 2034 71 8 11 chr4 29922745 29923013 -154365649 - AluSp SINE Alu -46 267 1 992 104 7 0 chr4 29923013 29923148 -154365514 - AluSq/x SINE Alu -177 136 1 394 241 0 0 chr4 29923212 29923299 -154365363 + L2 LINE L2 3187 3273 -40 216 300 88 0 chr4 29923393 29923473 -154365189 + L2 LINE L2 3134 3220 -52 446 254 0 18 chr4 29923493 29923603 -154365059 - L2 LINE L2 -4 3309 3202 242 317 78 42 chr4 29923609 29923751 -154364911 - L2 LINE L2 -9 3304 3158 1827 158 63 20 chr4 29923842 29924189 -154364473 + MLT1A1 LTR MaLR 1 362 -3 335 313 133 24 chr4 29924191 29924357 -154364305 + MIR SINE MIR 17 200 -62 2004 127 3 10 chr4 29925386 29925678 -154362984 - AluSx SINE Alu -22 290 1 1269 107 95 196 chr4 29925686 29926022 -154362640 - AluJo SINE Alu 0 302 1 264 282 20 40 chr4 29926149 29926298 -154362364 + L1ME4a LINE L1 5976 6121 0 378 101 27 0 chr4 29926700 29926775 -154361887 + L1P5 LINE L1 5409 5488 -666 2039 87 80 0 chr4 29926777 29927053 -154361609 + AluSg SINE Alu 1 298 -12 310 223 133 85 chr4 29927081 29927292 -154361370 - AluSq SINE Alu 0 303 83 1587 114 188 8 chr4 29927854 29928109 -154360553 - AluSx SINE Alu -11 301 1 207 0 0 0 chr4 29928137 29928160 -154360502 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1358 133 127 112 chr4 29928189 29928444 -154360218 + Charlie5 DNA MER1_type 426 691 -1933 2010 103 21 3 chr4 29928444 29928734 -154359928 + AluSp SINE Alu 1 295 -18 1358 133 127 112 chr4 29928734 29928905 -154359757 + Charlie5 DNA MER1_type 691 858 -1766 1143 229 7 58 chr4 29928970 29929280 -154359382 - AluJb SINE Alu -8 294 1 251 154 46 31 chr4 29929319 29929384 -154359278 + Charlie5 DNA MER1_type 855 920 -1692 2237 91 11 0 chr4 29929573 29929859 -154358803 + AluSq SINE Alu 5 293 -20 400 323 41 25 chr4 29929875 29930194 -154358468 - L1ME4a LINE L1 -103 6018 5695 13737 149 39 28 chr4 29931478 29932447 -154356215 - Tigger1 DNA MER2_type -1 2417 1461 1564 146 109 4 chr4 29932447 29932714 -154355948 + AluJb SINE Alu 1 295 -17 13737 149 39 28 chr4 29932714 29933819 -154354843 - Tigger1 DNA MER2_type -957 1461 370 2031 105 61 0 chr4 29933819 29934114 -154354548 - AluSp SINE Alu 0 313 1 1963 150 10 3 chr4 29934117 29934411 -154354251 - AluSx SINE Alu -16 296 1 13737 149 39 28 chr4 29934411 29934720 -154353942 - Tigger1 DNA MER2_type -2049 369 1 25 51 0 0 chr4 29934873 29934912 -154353750 + AT_rich Low_complexity Low_complexity 1 39 0 1540 159 72 14 chr4 29935756 29936032 -154352630 + AluJo SINE Alu 1 292 -20 2183 104 13 19 chr4 29936891 29937061 -154351601 - AluSx SINE Alu -7 305 136 2429 71 0 0 chr4 29937061 29937358 -154351304 - AluSc SINE Alu -12 297 1 2183 104 13 19 chr4 29937358 29937494 -154351168 - AluSx SINE Alu -176 136 1 573 263 125 18 chr4 29939215 29939439 -154349223 - MIR SINE MIR 0 262 15 741 259 140 35 chr4 29940714 29941021 -154347641 - MLT1H LTR MaLR -182 367 1 2239 121 0 0 chr4 29941281 29941587 -154347075 + AluSx SINE Alu 1 306 -6 350 111 95 0 chr4 29942388 29942451 -154346211 - L1MA4A LINE L1 -6 6297 6229 273 314 113 24 chr4 29943180 29943304 -154345358 - MIR3 SINE MIR -66 142 8 2207 102 26 7 chr4 29943346 29943649 -154345013 - AluSx SINE Alu -1 311 3 476 326 117 61 chr4 29943880 29944257 -154344405 + L2 LINE L2 2866 3263 -9 342 253 50 91 chr4 29944905 29945126 -154343536 - HAL1 LINE L1 -4 2503 2292 1005 286 87 43 chr4 29945301 29945838 -154342824 - HAL1 LINE L1 -668 1839 1264 788 188 0 0 chr4 29945838 29945966 -154342696 - FLAM_A SINE Alu -5 128 1 1005 286 87 43 chr4 29945966 29946107 -154342555 - HAL1 LINE L1 -1243 1264 1131 1230 261 148 31 chr4 29946166 29946880 -154341782 - L2 LINE L2 -174 3139 2335 1292 233 120 69 chr4 29946895 29947535 -154341127 - L1MC4 LINE L1 -4 8038 7366 2941 245 196 12 chr4 29947544 29948898 -154339764 - L2 LINE L2 -961 2353 750 325 310 55 21 chr4 29948901 29949046 -154339616 - HAL1 LINE L1 -1394 1113 964 188 200 80 0 chr4 29949892 29949942 -154338720 - MIR SINE MIR -98 164 111 295 305 57 0 chr4 29951010 29951115 -154337547 - L1MC5 LINE L1 -46 7915 7805 682 190 35 0 chr4 29951145 29951287 -154337375 - L1MA4 LINE L1 -5 6295 6149 211 267 44 56 chr4 29951402 29951492 -154337170 - L2 LINE L2 -36 3277 3189 658 235 117 0 chr4 29951519 29951685 -154336977 - MER3 DNA MER1_type 0 209 25 201 244 37 73 chr4 29952574 29952656 -154336006 + MIR SINE MIR 17 95 -113 245 213 250 19 chr4 29952656 29952764 -154335898 + L2 LINE L2 3179 3311 -2 355 169 0 0 chr4 29955279 29955338 -154333324 - Charlie1a DNA MER1_type 0 1455 1397 1298 131 0 0 chr4 29955338 29955521 -154333141 + AluSg/x SINE Alu 118 300 -12 2886 166 70 56 chr4 29955521 29955650 -154333012 - Charlie1a DNA MER1_type -1356 1405 1279 750 204 80 0 chr4 29955650 29955812 -154332850 + FAM SINE Alu 1 175 0 2886 166 70 56 chr4 29955812 29956429 -154332233 - Charlie1a DNA MER1_type -1482 1279 649 1340 157 142 11 chr4 29956439 29956700 -154331962 - AluJb SINE Alu -17 295 1 1493 225 129 10 chr4 29956715 29957101 -154331561 - Charlie1a DNA MER1_type -1023 432 1 427 196 214 12 chr4 29958325 29958493 -154330169 - MIR SINE MIR -5 257 56 2077 94 101 3 chr4 29958534 29958862 -154329800 + MER46B DNA MER2_type 1 235 -1 243 0 0 0 chr4 29958901 29958928 -154329734 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 800 294 17 4 chr4 29959436 29959667 -154328995 + MIR SINE MIR 2 235 -27 2699 219 68 55 chr4 29959713 29960403 -154328259 - MER21B LTR ERV1 -62 801 98 1783 140 49 0 chr4 29960403 29960668 -154327994 + AluSx SINE Alu 25 302 -10 2699 219 68 55 chr4 29960668 29960746 -154327916 - MER21B LTR ERV1 -765 98 23 329 310 69 25 chr4 29960852 29961055 -154327607 + MIR SINE MIR 8 219 -43 192 77 0 0 chr4 29961508 29961534 -154327128 + (TTTTTG)n Simple_repeat Simple_repeat 4 29 0 373 192 26 0 chr4 29961724 29961802 -154326860 + MER116 DNA Mariner 1 80 0 198 0 0 0 chr4 29961828 29961850 -154326812 + (TG)n Simple_repeat Simple_repeat 2 23 0 23 33 0 0 chr4 29962190 29962220 -154326442 + AT_rich Low_complexity Low_complexity 1 30 0 1955 154 13 0 chr4 29965019 29965318 -154323344 - AluJo SINE Alu -9 303 1 1969 149 3 13 chr4 29966502 29966804 -154321858 + AluSx SINE Alu 1 299 -13 466 68 41 0 chr4 29968213 29968286 -154320376 - L1MA3 LINE L1 0 6305 6230 303 304 92 4 chr4 29969377 29969523 -154319139 + MER5A DNA MER1_type 22 188 -1 1544 150 82 0 chr4 29970365 29970632 -154318030 + AluJb SINE Alu 1 289 -23 357 82 0 0 chr4 29970633 29970648 -154318014 + (TG)n Simple_repeat Simple_repeat 1 64 0 357 82 0 0 chr4 29970648 29970697 -154317965 + (TG)n Simple_repeat Simple_repeat 2 50 0 888 310 93 2 chr4 29970905 29971389 -154317273 - L2 LINE L2 -1326 1988 1461 289 311 141 28 chr4 29971423 29971786 -154316876 - L2 LINE L2 -2304 1010 607 231 61 0 0 chr4 29972093 29972126 -154316536 + (TTTAA)n Simple_repeat Simple_repeat 3 35 0 1430 181 47 29 chr4 29972127 29972403 -154316259 - AluJo SINE Alu -31 281 1 347 266 101 41 chr4 29973141 29973310 -154315352 - MIR SINE MIR -52 210 32 622 304 36 24 chr4 29973314 29973561 -154315101 - MIR SINE MIR 0 262 13 1402 136 15 0 chr4 29973907 29974113 -154314549 - AluSg/x SINE Alu -19 293 85 297 0 0 0 chr4 29974222 29974255 -154314407 + (TG)n Simple_repeat Simple_repeat 2 34 0 1237 151 184 25 chr4 29974272 29974511 -154314151 - AluJo SINE Alu -35 277 1 472 279 14 43 chr4 29975488 29975696 -154312966 - MIR SINE MIR -5 257 56 245 217 34 16 chr4 29976364 29976436 -154312226 + MER45A DNA AcHobo 2 64 -114 2056 105 26 61 chr4 29976452 29976796 -154311866 - THE1B LTR MaLR -32 332 1 1633 163 30 13 chr4 29976822 29977122 -154311540 - MER89 LTR ERV1 -2 557 253 335 183 21 11 chr4 29977122 29977363 -154311299 + AluJo SINE Alu 1 299 -3 2374 97 0 0 chr4 29977375 29977684 -154310978 - AluSq SINE Alu -3 310 2 817 252 91 9 chr4 29977684 29977914 -154310748 - MER89 LTR ERV1 -304 255 7 449 165 153 0 chr4 29977929 29978014 -154310648 + MER45A DNA AcHobo 81 178 0 350 293 83 13 chr4 29978838 29978995 -154309667 + MIR SINE MIR 31 198 -64 432 290 6 19 chr4 29979201 29979363 -154309299 + MARNA DNA Mariner 340 499 -87 273 233 0 14 chr4 29979736 29979809 -154308853 + MER63 DNA MER1_type 953 1024 -36 2074 127 10 3 chr4 29979813 29980112 -154308550 + AluSq SINE Alu 1 301 -12 1099 243 131 44 chr4 29980152 29980724 -154307938 - HAL1 LINE L1 -1174 1333 712 580 256 154 43 chr4 29980725 29980959 -154307703 - MLT1H LTR MaLR -2 547 288 319 252 45 54 chr4 29980959 29981070 -154307592 - HAL1 LINE L1 -2397 110 1 547 290 86 15 chr4 29981106 29981242 -154307420 - L2 LINE L2 -345 2927 2802 2187 129 3 0 chr4 29981242 29981551 -154307111 - AluSx SINE Alu -2 310 1 547 290 86 15 chr4 29981551 29981751 -154306911 - L2 LINE L2 -470 2802 2572 304 229 24 0 chr4 29982559 29982642 -154306020 - MIR SINE MIR -108 154 70 2102 133 0 0 chr4 29983013 29983307 -154305355 + AluSx SINE Alu 1 294 -18 214 271 72 72 chr4 29983378 29983585 -154305077 + MIR SINE MIR 35 241 -21 708 259 34 43 chr4 29983621 29983831 -154304831 + MIR SINE MIR 23 228 -34 379 221 106 0 chr4 29984147 29984251 -154304411 - L1ME4a LINE L1 -1 6120 6006 2321 105 0 6 chr4 29984369 29984682 -154303980 + AluSx SINE Alu 1 311 -1 2437 174 102 15 chr4 29984877 29985177 -154303485 - L1PA16 LINE L1 -16 6150 5878 2630 59 0 0 chr4 29985177 29985482 -154303180 - AluY SINE Alu -6 305 1 2437 174 102 15 chr4 29985482 29985518 -154303144 - L1PA16 LINE L1 -288 5878 5847 366 23 0 0 chr4 29985518 29985561 -154303101 + (TG)n Simple_repeat Simple_repeat 2 44 0 2437 174 102 15 chr4 29985561 29985752 -154302910 - L1PA16 LINE L1 -319 5847 5576 2719 221 90 20 chr4 29986246 29987036 -154301626 - L1ME3A LINE L1 -1 6169 5325 333 308 126 13 chr4 29987591 29987750 -154300912 + MIR SINE MIR 32 208 -54 1991 130 47 13 chr4 29988980 29989281 -154299381 + AluSx SINE Alu 1 311 -1 411 334 146 13 chr4 29989411 29989719 -154298943 - L2 LINE L2 -1 3271 2923 583 262 108 68 chr4 29989862 29990325 -154298337 - L2 LINE L2 0 3313 2740 1790 141 31 21 chr4 29990325 29990615 -154298047 - AluJo SINE Alu -19 293 1 583 262 108 68 chr4 29990615 29990829 -154297833 - L2 LINE L2 -573 2740 2536 605 193 18 48 chr4 29990844 29991010 -154297652 + MER5A DNA MER1_type 1 161 -28 2410 95 0 0 chr4 29991261 29991566 -154297096 + AluSx SINE Alu 1 305 -7 309 344 46 0 chr4 29991566 29991717 -154296945 - MIR SINE MIR -5 257 100 371 168 40 30 chr4 29991728 29991829 -154296833 + L1MB3 LINE L1 6082 6183 0 2436 85 13 0 chr4 29992381 29992686 -154295976 - AluSx SINE Alu -3 309 1 23 33 0 0 chr4 29992692 29992722 -154295940 + AT_rich Low_complexity Low_complexity 1 30 0 605 274 58 61 chr4 29993137 29993447 -154295215 + MER46C DNA MER2_type 30 338 0 190 278 111 19 chr4 29993484 29993592 -154295070 + MIR SINE MIR 23 140 -68 368 269 62 66 chr4 29993731 29993988 -154294674 + L2 LINE L2 3015 3270 -43 26 50 0 0 chr4 29995312 29995352 -154293310 + AT_rich Low_complexity Low_complexity 1 40 0 2133 96 7 36 chr4 29995395 29995698 -154292964 - AluSq SINE Alu -19 294 1 667 306 53 42 chr4 29995706 29996138 -154292524 - L1ME3A LINE L1 -285 5885 5449 283 264 207 11 chr4 29996195 29996409 -154292253 - MIR SINE MIR -7 255 2 194 350 48 10 chr4 29996409 29996512 -154292150 - MIR3 SINE MIR -51 157 51 254 264 189 0 chr4 29996701 29996807 -154291855 - MIR SINE MIR -31 231 106 3039 138 40 108 chr4 29997028 29997227 -154291435 - L1MC3 LINE L1 -6 7779 7568 1882 151 30 7 chr4 29997227 29997532 -154291130 - AluSx SINE Alu 0 312 1 3039 138 40 108 chr4 29997532 29998029 -154290633 - L1MC3 LINE L1 -217 7568 7130 1904 153 14 14 chr4 29998029 29998324 -154290338 + AluJb SINE Alu 1 295 -17 328 290 36 22 chr4 29998526 29998668 -154289994 - MIR SINE MIR -60 148 18 210 290 101 36 chr4 29999029 29999167 -154289495 - MER5A DNA MER1_type -6 183 37 583 198 9 0 chr4 29999186 29999292 -154289370 + AluJb SINE Alu 193 299 -13 437 250 14 0 chr4 29999337 29999481 -154289181 + GA-rich Low_complexity Low_complexity 3 148 0 906 152 0 0 chr4 29999485 29999803 -154288859 + FLAM_C SINE Alu 1 318 0 3592 138 69 12 chr4 29999814 30000483 -154288179 + L1MB3 LINE L1 5477 6183 0 636 173 12 93 chr4 30000495 30000604 -154288058 - MIR SINE MIR -74 188 72 2132 94 22 0 chr4 30000604 30000881 -154287781 + AluSq SINE Alu 1 283 -30 207 0 0 0 chr4 30000884 30000907 -154287755 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 636 173 12 93 chr4 30000907 30000955 -154287707 - MIR SINE MIR -192 70 40 367 259 78 92 chr4 30000957 30001109 -154287553 + L2 LINE L2 2971 3124 -189 213 39 0 0 chr4 30001109 30001135 -154287527 + (TTA)n Simple_repeat Simple_repeat 2 27 0 367 259 78 92 chr4 30001135 30001329 -154287333 + L2 LINE L2 3124 3312 -1 575 275 64 49 chr4 30001330 30001675 -154286987 - L2 LINE L2 -14 3258 2909 363 68 0 0 chr4 30001731 30001775 -154286887 + MER57B LTR ERV1 324 367 -67 25 0 0 0 chr4 30001775 30001800 -154286862 + AT_rich Low_complexity Low_complexity 1 25 0 342 308 58 47 chr4 30002071 30002243 -154286419 - MIR SINE MIR -62 200 27 1768 193 82 37 chr4 30003163 30003542 -154285120 - MSTD LTR MaLR 0 396 1 258 333 138 24 chr4 30003775 30004066 -154284596 + L2 LINE L2 334 657 -2657 993 243 194 19 chr4 30004150 30004682 -154283980 + L2 LINE L2 1320 1944 -1370 721 217 60 18 chr4 30005451 30005617 -154283045 - AluJo SINE Alu -20 292 120 1019 85 8 0 chr4 30005691 30005821 -154282841 - AluSg SINE Alu -179 131 1 214 320 13 0 chr4 30005826 30005904 -154282758 + L2 LINE L2 3234 3312 -1 1102 124 56 6 chr4 30006518 30006696 -154281966 - L1PB4 LINE L1 -2 6154 5968 1086 190 5 9 chr4 30006696 30006907 -154281755 - AluSq SINE Alu -20 293 84 3021 125 55 50 chr4 30006907 30007400 -154281262 - L1PB4 LINE L1 -168 5988 5490 1849 105 98 25 chr4 30007400 30007685 -154280977 - AluSq SINE Alu -7 306 1 3021 125 55 50 chr4 30007685 30007753 -154280909 - L1PB4 LINE L1 -666 5490 5424 252 282 20 40 chr4 30008164 30008313 -154280349 - L1ME4a LINE L1 0 6121 5976 1152 107 95 196 chr4 30008440 30008776 -154279886 + AluJo SINE Alu 1 302 0 2067 126 0 10 chr4 30008784 30009077 -154279585 + AluSx SINE Alu 1 290 -22 297 317 126 24 chr4 30010105 30010272 -154278390 - MIR SINE MIR -62 200 17 1756 164 58 17 chr4 30010274 30010622 -154278040 - MLT1A1 LTR MaLR -3 362 1 210 317 78 42 chr4 30010713 30010855 -154277807 + L2 LINE L2 3158 3304 -9 411 254 0 18 chr4 30010861 30010971 -154277691 + L2 LINE L2 3202 3309 -4 189 300 88 0 chr4 30010991 30011071 -154277591 - L2 LINE L2 -52 3220 3134 366 241 0 0 chr4 30011165 30011252 -154277410 - L2 LINE L2 -40 3273 3187 1996 105 22 38 chr4 30011316 30011451 -154277211 + AluSx SINE Alu 1 137 -175 2520 77 0 0 chr4 30011451 30011761 -154276901 + AluSp SINE Alu 1 310 -3 1996 105 22 38 chr4 30011761 30011939 -154276723 + AluSx SINE Alu 137 309 -3 1413 178 34 60 chr4 30012381 30012679 -154275983 + AluJb SINE Alu 5 294 -18 401 248 208 58 chr4 30013027 30013301 -154275361 - L2 LINE L2 -21 3292 2978 475 251 145 67 chr4 30013488 30013901 -154274761 - L2 LINE L2 -321 2992 2550 2056 143 7 79 chr4 30014161 30014579 -154274083 - MLT1B LTR MaLR 0 390 3 1960 129 23 13 chr4 30014598 30014901 -154273761 + AluSx SINE Alu 7 312 0 411 303 45 7 chr4 30015550 30015705 -154272957 - MIR SINE MIR -57 205 45 12186 112 166 84 chr4 30016104 30016449 -154272213 - Tigger4(Zombi) DNA MER2_type -1 2730 2415 2301 102 3 3 chr4 30016449 30016762 -154271900 - AluSq SINE Alu 0 313 1 12186 112 166 84 chr4 30016762 30016993 -154271669 - Tigger4(Zombi) DNA MER2_type -316 2415 2204 207 0 0 0 chr4 30016993 30017016 -154271646 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 12186 112 166 84 chr4 30017016 30017088 -154271574 - Tigger4(Zombi) DNA MER2_type -527 2204 2139 2012 138 0 0 chr4 30017088 30017378 -154271284 - AluSg SINE Alu 0 310 21 12186 112 166 84 chr4 30017378 30017622 -154271040 - Tigger4(Zombi) DNA MER2_type -592 2139 1916 919 152 7 0 chr4 30017622 30017760 -154270902 + AluJo SINE Alu 1 139 -173 12186 112 166 84 chr4 30017760 30017777 -154270885 - Tigger4(Zombi) DNA MER2_type -815 1916 1902 1467 106 0 10 chr4 30017777 30017976 -154270686 - AluSq SINE Alu -116 197 1 12186 112 166 84 chr4 30017976 30018566 -154270096 - Tigger4(Zombi) DNA MER2_type -829 1902 1362 2517 71 0 0 chr4 30018566 30018863 -154269799 - AluSc SINE Alu -12 297 1 12186 112 166 84 chr4 30018863 30019734 -154268928 - Tigger4(Zombi) DNA MER2_type -1369 1362 11 2159 103 0 0 chr4 30020522 30020794 -154267868 + AluSx SINE Alu 36 307 -5 226 0 0 56 chr4 30020848 30020884 -154267778 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 318 105 0 53 chr4 30020888 30020945 -154267717 - AluSp/q SINE Alu -17 286 233 1935 122 0 7 chr4 30021132 30021402 -154267260 - AluSx SINE Alu -44 268 1 587 199 20 0 chr4 30021430 30021576 -154267086 + GA-rich Low_complexity Low_complexity 3 151 0 1985 108 0 8 chr4 30022063 30022331 -154266331 - AluSq SINE Alu -33 280 15 517 140 320 0 chr4 30022559 30022659 -154266003 + FLAM_C SINE Alu 1 132 -1 1859 116 19 0 chr4 30023165 30023423 -154265239 + AluSq SINE Alu 50 312 -1 1935 140 23 7 chr4 30023776 30024076 -154264586 - AluSq SINE Alu -8 305 1 795 155 0 23 chr4 30024108 30024237 -154264425 + FLAM_C SINE Alu 1 126 -7 200 214 0 24 chr4 30024989 30025031 -154263631 + (TAAG)n Simple_repeat Simple_repeat 2 42 0 2292 107 0 7 chr4 30025048 30025358 -154263304 + AluSq SINE Alu 1 308 -5 1639 264 75 19 chr4 30025360 30025929 -154262733 + L1MC1 LINE L1 5352 5956 -1852 2112 144 0 0 chr4 30025929 30026228 -154262434 + AluSq SINE Alu 2 300 -13 1639 264 75 19 chr4 30026228 30026244 -154262418 + L1MC1 LINE L1 5956 5970 -1838 243 61 0 0 chr4 30026259 30026292 -154262370 + (CA)n Simple_repeat Simple_repeat 2 34 0 4989 153 3 16 chr4 30026292 30027272 -154261390 + L1PA15 LINE L1 4502 5476 -689 1390 136 5 0 chr4 30027278 30027484 -154261178 - AluSg/x SINE Alu -20 290 84 3643 97 12 15 chr4 30027484 30028002 -154260660 + L1PA15 LINE L1 5461 5976 -189 1928 94 14 11 chr4 30028117 30028404 -154260258 + L1PA15 LINE L1 5875 6162 -3 252 261 0 0 chr4 30028475 30028544 -154260118 + (TA)n Simple_repeat Simple_repeat 1 69 0 1222 213 141 32 chr4 30028700 30029104 -154259558 - MLT1C LTR MaLR -19 448 1 1066 224 42 102 chr4 30029571 30029992 -154258670 - MLT1A2 LTR MaLR 0 374 1 732 237 60 5 chr4 30030272 30030487 -154258175 + MIR SINE MIR 36 262 0 2383 90 7 0 chr4 30030752 30031051 -154257611 + AluSp SINE Alu 3 303 -10 790 142 8 15 chr4 30031052 30031186 -154257476 + L1MC1 LINE L1 6192 6324 -9 1646 157 10 51 chr4 30031187 30031271 -154257391 + AluJo SINE Alu 1 87 -225 2593 62 0 0 chr4 30031271 30031575 -154257087 + AluY SINE Alu 1 304 -7 1646 157 10 51 chr4 30031575 30031784 -154256878 + AluJo SINE Alu 87 282 -30 204 40 0 0 chr4 30031787 30031812 -154256850 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 1294 105 6 0 chr4 30032263 30032435 -154256227 - AluSg/x SINE Alu -20 290 118 335 304 0 0 chr4 30032457 30032559 -154256103 + MIR SINE MIR 148 249 -13 23 33 0 0 chr4 30033265 30033295 -154255367 + AT_rich Low_complexity Low_complexity 1 30 0 2822 116 16 12 chr4 30033389 30033821 -154254841 + MER57B LTR ERV1 1 434 0 528 244 140 64 chr4 30033836 30033930 -154254732 - MARNA DNA Mariner -162 424 339 2214 97 31 0 chr4 30033930 30034220 -154254442 - AluSq SINE Alu -14 299 1 528 244 140 64 chr4 30034220 30034375 -154254287 - MARNA DNA Mariner -247 339 156 324 340 19 0 chr4 30034433 30034536 -154254126 - MER81 DNA DNA -3 111 7 260 225 98 46 chr4 30034890 30035036 -154253626 + MIR SINE MIR 54 205 -57 4340 111 18 66 chr4 30035215 30035938 -154252724 + LTR8 LTR ERV1 4 691 0 230 296 24 72 chr4 30035944 30036069 -154252593 - L2 LINE L2 -186 3086 2968 2469 82 0 0 chr4 30036187 30036491 -154252171 + AluY SINE Alu 1 304 -7 186 250 33 92 chr4 30036521 30036673 -154251989 - L2 LINE L2 -618 2696 2554 207 243 22 140 chr4 30036704 30036840 -154251822 + L2 LINE L2 3024 3143 -170 495 234 42 42 chr4 30037000 30037167 -154251495 + L2 LINE L2 3147 3313 0 1142 138 0 95 chr4 30038394 30038480 -154250182 + L1PA15 LINE L1 5954 6047 -118 2133 125 10 13 chr4 30038480 30038793 -154249869 + AluSx SINE Alu 1 312 0 1142 138 0 95 chr4 30038793 30038810 -154249852 + L1PA15 LINE L1 6047 6064 -101 2126 131 0 19 chr4 30038810 30039122 -154249540 + AluSx SINE Alu 1 306 -6 1142 138 0 95 chr4 30039122 30039249 -154249413 + L1PA15 LINE L1 6064 6163 -2 28 0 0 0 chr4 30039250 30039278 -154249384 + AT_rich Low_complexity Low_complexity 1 28 0 1076 104 94 30 chr4 30039287 30039488 -154249174 + L1PA16 LINE L1 5952 6165 -1 192 97 0 0 chr4 30039530 30039561 -154249101 + (CAAAAA)n Simple_repeat Simple_repeat 4 34 0 341 271 126 0 chr4 30039870 30040021 -154248641 - L1MEd LINE L1 -4969 1150 981 405 333 80 30 chr4 30040208 30040598 -154248064 - L1MEd LINE L1 -5626 493 81 2051 110 23 36 chr4 30040598 30040906 -154247756 + AluSx SINE Alu 1 304 -8 2810 195 33 20 chr4 30041038 30041203 -154247459 + L1M4 LINE L1 3622 3783 -2363 2169 125 3 10 chr4 30041203 30041515 -154247147 + AluSx SINE Alu 1 310 -2 2810 195 33 20 chr4 30041515 30041948 -154246714 + L1M4 LINE L1 3783 4228 -1918 862 199 44 44 chr4 30041964 30042170 -154246492 + L1MB8 LINE L1 5964 6169 -9 2108 122 0 0 chr4 30042223 30042509 -154246153 - AluSx SINE Alu -26 286 1 250 227 17 118 chr4 30042694 30042882 -154245780 + L1P LINE L1 3584 3753 -2393 1786 161 6 50 chr4 30042882 30043376 -154245286 + AluSx SINE Alu 1 480 0 261 283 9 0 chr4 30043401 30043507 -154245155 + L1M4 LINE L1 3867 3973 -2173 1810 156 16 25 chr4 30043528 30043843 -154244819 + AluJo SINE Alu 1 312 0 2842 10 0 0 chr4 30043892 30044194 -154244468 + AluYa5 SINE Alu 1 302 -9 2054 134 0 10 chr4 30044423 30044715 -154243947 - AluSq SINE Alu -24 289 1 222 362 53 13 chr4 30044715 30044867 -154243795 - MIR SINE MIR -70 192 35 1550 190 6 55 chr4 30045364 30045690 -154242972 - AluJb SINE Alu -2 310 1 401 259 65 35 chr4 30046007 30046177 -154242485 + Charlie7 DNA MER1_type 46 220 -2392 448 256 134 0 chr4 30047166 30047330 -154241332 + MIR SINE MIR 44 229 -33 270 106 0 0 chr4 30047334 30047381 -154241281 + (TG)n Simple_repeat Simple_repeat 2 48 0 242 180 82 0 chr4 30047389 30047450 -154241212 + Charlie7 DNA MER1_type 1452 1517 -1095 431 220 65 24 chr4 30047460 30047628 -154241034 - MER113 DNA MER1_type? -337 184 10 2100 113 20 3 chr4 30047727 30048019 -154240643 - AluSc SINE Alu -12 297 1 672 261 105 8 chr4 30048209 30048447 -154240215 + MIR SINE MIR 1 261 -1 23 33 0 0 chr4 30048476 30048506 -154240156 + AT_rich Low_complexity Low_complexity 1 30 0 1908 107 0 19 chr4 30048520 30048819 -154239843 + AluSx SINE Alu 25 318 0 258 262 60 12 chr4 30048833 30048917 -154239745 - Charlie7 DNA MER1_type -2524 88 1 190 304 0 0 chr4 30049650 30049696 -154238966 - L3 LINE CR1 -5 1572 1527 2082 116 31 0 chr4 30049831 30050124 -154238538 + AluSx SINE Alu 1 302 -10 313 301 84 30 chr4 30050192 30050358 -154238304 + MIR3 SINE MIR 10 184 -24 695 316 30 23 chr4 30050403 30050669 -154237993 - L3 LINE CR1 -97 1480 1213 821 220 75 9 chr4 30050919 30051133 -154237529 - MIR SINE MIR -10 252 25 628 159 145 14 chr4 30051136 30051274 -154237388 + AluJb SINE Alu 137 292 -20 1959 132 28 0 chr4 30051274 30051562 -154237100 + AluJb SINE Alu 1 296 -16 2274 116 0 0 chr4 30051739 30052042 -154236620 - AluSx SINE Alu -9 303 1 1374 236 36 21 chr4 30052047 30052433 -154236229 - L1ME2 LINE L1 0 6164 5773 267 324 37 29 chr4 30052503 30052639 -154236023 - L2 LINE L2 0 3272 3136 1006 144 176 0 chr4 30052749 30052936 -154235726 - AluJo SINE Alu -12 300 81 373 233 133 0 chr4 30053068 30053156 -154235506 - MIR SINE MIR -116 146 47 388 295 132 11 chr4 30053156 30053346 -154235316 + MIR SINE MIR 2 214 -48 2456 91 0 0 chr4 30055199 30055497 -154233165 + AluSx SINE Alu 1 298 -14 390 297 176 43 chr4 30055514 30055770 -154232892 - L2 LINE L2 0 3272 2983 241 100 0 0 chr4 30056147 30056187 -154232475 - Alu SINE Alu -3 297 258 222 194 0 90 chr4 30057557 30057624 -154231038 - MIR SINE MIR -130 132 72 1892 129 44 27 chr4 30057783 30058077 -154230585 + AluJo SINE Alu 6 304 -8 548 60 0 0 chr4 30058376 30058443 -154230219 - Charlie3 DNA MER1_type 0 2712 2646 234 227 0 53 chr4 30059538 30059613 -154229049 + CT-rich Low_complexity Low_complexity 1 71 0 612 269 41 29 chr4 30059927 30060169 -154228493 + MER112 DNA MER1_type 8 252 -8 430 368 89 10 chr4 30060590 30060993 -154227669 + L2 LINE L2 2725 3187 -85 1602 191 11 14 chr4 30061335 30061618 -154227044 - AluJo SINE Alu -10 302 21 266 290 14 0 chr4 30062223 30062292 -154226370 - MIR SINE MIR -57 151 82 300 387 0 7 chr4 30062528 30062670 -154225992 + L3 LINE CR1 1391 1531 -46 314 270 0 0 chr4 30062672 30062746 -154225916 + MER5A DNA MER1_type 1 74 -115 551 300 6 6 chr4 30062746 30062906 -154225756 - MER52A LTR ERV1 0 1755 1596 890 247 34 119 chr4 30062906 30063346 -154225316 - MER52A LTR ERV1 -23 478 343 2189 140 0 3 chr4 30063475 30063782 -154224880 + AluSx SINE Alu 1 306 -6 521 231 17 0 chr4 30063814 30063931 -154224731 - LTR28 LTR ERV1 -871 149 31 2016 129 21 0 chr4 30064811 30065091 -154223571 + AluSx SINE Alu 1 286 -26 180 0 0 0 chr4 30065656 30065676 -154222986 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1696 147 17 51 chr4 30065678 30065970 -154222692 - AluJo SINE Alu -30 282 1 229 326 68 23 chr4 30066500 30066632 -154222030 + MIR SINE MIR 50 187 -75 686 174 36 18 chr4 30066712 30066879 -154221783 + L1M4 LINE L1 4560 4729 -1417 2034 196 42 74 chr4 30066879 30067445 -154221217 - MLT2B3 LTR ERVL -6 548 1 702 259 99 18 chr4 30067445 30067812 -154220850 + L1M4 LINE L1 4750 5154 -992 279 293 30 36 chr4 30068133 30068275 -154220387 - MIR SINE MIR -65 143 21 476 271 113 23 chr4 30068614 30068791 -154219871 - MIR3 SINE MIR 0 208 16 502 221 0 0 chr4 30069244 30069348 -154219314 + MSTD LTR MaLR 23 126 -270 182 309 75 64 chr4 30070341 30070435 -154218227 - L3b LINE CR1 -73 1510 1416 2311 122 0 3 chr4 30070747 30071051 -154217611 + AluSx SINE Alu 1 303 -9 1959 141 0 7 chr4 30071210 30071507 -154217155 + AluSx SINE Alu 1 295 -17 197 297 141 45 chr4 30071641 30071817 -154216845 + MIR SINE MIR 21 212 -50 354 275 0 58 chr4 30072166 30072286 -154216376 - L3 LINE CR1 -666 911 799 247 374 28 8 chr4 30072343 30072571 -154216091 - L3 LINE CR1 -916 661 361 606 219 139 33 chr4 30073521 30073736 -154214926 + MIR SINE MIR 13 250 -12 261 295 189 33 chr4 30075271 30075393 -154213269 + MIR SINE MIR 48 188 -74 585 313 0 0 chr4 30075522 30075685 -154212977 - MIR SINE MIR -98 164 2 309 232 7 56 chr4 30076402 30076544 -154212118 + G-rich Low_complexity Low_complexity 5 139 0 21 0 0 0 chr4 30076579 30076600 -154212062 + GC_rich Low_complexity Low_complexity 1 21 0 191 236 18 36 chr4 30077713 30077768 -154210894 - MIR SINE MIR -12 250 197 184 227 0 0 chr4 30077760 30077804 -154210858 - L2 LINE L2 -5 3308 3265 * 229 220 0 20 chr4 30077885 30077935 -154210727 - L2 LINE L2 -8 3305 3257 1382 132 5 0 chr4 30078250 30078447 -154210215 + AluSq SINE Alu 104 301 -12 349 289 51 66 chr4 30078618 30078732 -154209930 - L1MEc LINE L1 -4688 1708 1594 2472 52 0 7 chr4 30078732 30079022 -154209640 + AluY SINE Alu 8 295 -16 349 289 51 66 chr4 30079022 30079163 -154209499 - L1MEc LINE L1 -4802 1594 1457 539 327 156 30 chr4 30080639 30081533 -154207129 - L2 LINE L2 -4 3309 2310 3014 211 70 42 chr4 30081757 30082273 -154206389 + L1ME2 LINE L1 4886 5386 -778 2185 111 7 7 chr4 30082273 30082579 -154206083 + AluSg SINE Alu 5 310 0 3014 211 70 42 chr4 30082579 30083307 -154205355 + L1ME2 LINE L1 5386 6163 -1 299 277 50 0 chr4 30083328 30083429 -154205233 + L1MEd LINE L1 905 1010 -5109 1332 69 0 6 chr4 30084707 30084881 -154203781 - MER107 DNA MER1_type 0 197 25 1032 130 34 39 chr4 30084984 30085192 -154203470 - L1MD3 LINE L1 -385 7610 7404 262 163 20 0 chr4 30085192 30085241 -154203421 - MLT1F1 LTR MaLR -442 125 76 1910 165 10 3 chr4 30085567 30085876 -154202786 - AluSx SINE Alu -1 311 1 251 271 100 57 chr4 30086509 30086649 -154202013 - MIR3 SINE MIR -59 149 4 330 327 37 0 chr4 30086670 30086777 -154201885 - MIR SINE MIR -68 140 30 1849 172 0 3 chr4 30087320 30087617 -154201045 - AluJo SINE Alu -16 296 1 234 148 56 19 chr4 30087621 30087675 -154200987 - MLT1K LTR MaLR -14 574 519 421 244 0 11 chr4 30087845 30087935 -154200727 - MER5B DNA MER1_type -89 89 1 1066 191 5 5 chr4 30088686 30088875 -154199787 - MER5A DNA MER1_type 0 189 1 223 320 98 74 chr4 30089019 30089425 -154199237 - L2 LINE L2 -4 3268 2853 893 286 102 16 chr4 30089716 30090100 -154198562 - LTR16A LTR ERVL -10 440 24 200 271 120 53 chr4 30090632 30090765 -154197897 - MIR3 SINE MIR -23 185 44 622 290 68 52 chr4 30090881 30091246 -154197416 + L2 LINE L2 2373 2743 -571 3620 136 38 31 chr4 30091361 30092046 -154196616 + L1MB8 LINE L1 5488 6177 -1 2554 93 0 0 chr4 30092053 30092366 -154196296 + AluSq SINE Alu 1 313 0 2309 90 13 16 chr4 30092989 30093299 -154195363 - AluSx SINE Alu -3 309 1 231 36 0 0 chr4 30093341 30093369 -154195293 + (CA)n Simple_repeat Simple_repeat 2 29 0 387 228 70 18 chr4 30093746 30093860 -154194802 + MIR SINE MIR 19 138 -70 22 56 0 0 chr4 30093937 30093973 -154194689 + AT_rich Low_complexity Low_complexity 1 36 0 502 303 107 8 chr4 30095298 30095559 -154193103 - L1ME3 LINE L1 -7 6155 5869 311 345 51 39 chr4 30095701 30095956 -154192706 - L2 LINE L2 0 3272 3015 2695 207 47 24 chr4 30096423 30097003 -154191659 + MLT1E LTR MaLR 1 593 0 186 289 0 0 chr4 30099396 30099441 -154189221 + MIR SINE MIR 218 262 0 205 266 16 62 chr4 30099796 30099860 -154188802 - MIR3 SINE MIR -38 170 110 481 218 36 0 chr4 30100256 30100366 -154188296 + MLT1F LTR MaLR 426 539 -3 336 250 11 23 chr4 30100507 30100595 -154188067 + L2 LINE L2 3209 3295 -18 451 311 50 0 chr4 30102424 30102604 -154186058 - MER117 DNA MER1_type 0 197 9 215 305 38 48 chr4 30102709 30102814 -154185848 - MIR SINE MIR -8 254 151 291 233 78 22 chr4 30102901 30102991 -154185671 - MIR SINE MIR -147 115 21 228 316 69 52 chr4 30103137 30103311 -154185351 + L2 LINE L2 2829 3005 -267 1100 133 6 6 chr4 30103314 30103479 -154185183 - AluJo/FRAM SINE Alu -8 304 140 385 190 51 0 chr4 30303482 30303561 -153985101 + MIR3 SINE MIR 100 182 -26 951 130 7 0 chr4 30305723 30305869 -153982793 - AluJb SINE Alu -165 147 1 502 273 42 30 chr4 30305931 30305944 -153982718 - L2 LINE L2 -15 3298 3287 722 183 8 30 chr4 30305944 30306075 -153982587 + FLAM_A SINE Alu 4 131 -2 502 273 42 30 chr4 30306075 30306226 -153982436 - L2 LINE L2 -26 3287 3132 2123 113 3 3 chr4 30306307 30306616 -153982046 + AluSc SINE Alu 1 309 0 1425 81 0 0 chr4 30306852 30307038 -153981624 - AluY SINE Alu -9 302 117 1496 114 188 8 chr4 30307159 30307414 -153981248 + AluSx SINE Alu 1 301 -11 284 224 133 86 chr4 30307977 30308187 -153980475 + AluSq SINE Alu 84 303 0 * 545 144 133 61 chr4 30308184 30308214 -153980448 + Charlie5 DNA MER1_type 53 79 -2545 1906 103 8 0 chr4 30308214 30308477 -153980185 - AluSg SINE Alu -12 298 34 545 144 133 61 chr4 30308477 30308627 -153980035 + Charlie5 DNA MER1_type 79 246 -2378 585 150 8 55 chr4 30308638 30308765 -153979897 - AluSg/x SINE Alu 0 309 189 276 30 0 0 chr4 30308872 30308905 -153979757 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 608 323 9 18 chr4 30309504 30309721 -153978941 - MIR SINE MIR -40 222 8 797 152 0 0 chr4 30309727 30309852 -153978810 - AluJ SINE Alu -5 307 183 827 136 48 0 chr4 30309861 30309986 -153978676 - AluJ SINE Alu -171 131 1 1847 145 0 26 chr4 30309998 30310308 -153978354 - AluSx SINE Alu -10 302 1 440 289 54 12 chr4 30310445 30310611 -153978051 + MIR SINE MIR 33 205 -57 187 261 22 0 chr4 30310666 30310712 -153977950 - L3 LINE CR1 -204 1373 1327 1171 178 15 5 chr4 30310726 30310923 -153977739 - MLT1C LTR MaLR 0 467 269 315 49 0 0 chr4 30311119 30311160 -153977502 + (TG)n Simple_repeat Simple_repeat 2 42 0 1818 122 0 34 chr4 30311160 30311455 -153977207 - AluSx SINE Alu -27 285 1 306 339 0 57 chr4 30311463 30311559 -153977103 - L3 LINE CR1 -820 757 668 2290 173 106 36 chr4 30311559 30312086 -153976576 - LTR6A LTR ERV1 0 564 1 306 339 0 57 chr4 30312086 30312113 -153976549 - L3 LINE CR1 -909 668 641 560 196 51 38 chr4 30312168 30312326 -153976336 + MER106B DNA MER1_type 897 1056 -3 636 81 0 0 chr4 30312506 30312593 -153976069 + (TCTCC)n Simple_repeat Simple_repeat 2 88 0 1475 137 0 4 chr4 30312593 30312819 -153975843 - AluSg/x SINE Alu -3 307 83 21 0 0 0 chr4 30312995 30313016 -153975646 + AT_rich Low_complexity Low_complexity 1 21 0 1241 118 0 6 chr4 30313126 30313304 -153975358 + AluSg/x SINE Alu 112 288 -24 2122 135 0 0 chr4 30313419 30313731 -153974931 + AluJb SINE Alu 1 312 0 219 246 123 0 chr4 30313779 30313836 -153974826 - MIR SINE MIR -2 260 197 216 0 0 0 chr4 30314225 30314249 -153974413 + (T)n Simple_repeat Simple_repeat 1 24 0 691 185 0 8 chr4 30314300 30314419 -153974243 + AluSq/x SINE Alu 33 150 -162 951 118 139 145 chr4 30314524 30314683 -153973979 + Charlie5 DNA MER1_type 530 688 -1936 1936 116 10 3 chr4 30314683 30314976 -153973686 + AluSp SINE Alu 1 295 -18 951 118 139 145 chr4 30314976 30315147 -153973515 + Charlie5 DNA MER1_type 688 858 -1766 1334 189 3 46 chr4 30315210 30315517 -153973145 - AluJo SINE Alu -18 294 1 323 178 0 27 chr4 30315536 30315609 -153973053 + Charlie5 DNA MER1_type 834 904 -1708 1965 131 3 7 chr4 30315793 30316099 -153972563 + AluSg SINE Alu 1 305 -5 1153 132 0 0 chr4 30316591 30316765 -153971897 + AluSg/x SINE Alu 137 310 -2 1132 95 12 12 chr4 30316874 30317043 -153971619 + AluSq SINE Alu 1 169 -144 1146 104 0 0 chr4 30317143 30317326 -153971336 + AluSq SINE Alu 130 312 0 1361 251 81 26 chr4 30317348 30317453 -153971209 + L1ME3A LINE L1 5383 5481 -689 2077 126 10 0 chr4 30317453 30317747 -153970915 + AluSx SINE Alu 1 297 -15 1361 251 81 26 chr4 30317747 30318174 -153970488 + L1ME3A LINE L1 5481 5944 -226 1069 221 108 82 chr4 30318340 30318720 -153969942 - L2 LINE L2 0 3313 2924 276 261 238 0 chr4 30319004 30319147 -153969515 + MIR SINE MIR 24 203 -59 2169 106 0 3 chr4 30319299 30319600 -153969062 - AluSx SINE Alu -12 300 1 669 191 23 118 chr4 30319752 30319788 -153968874 + MER4D LTR ERV1 684 722 -181 1737 158 6 22 chr4 30319788 30320105 -153968557 - AluJb SINE Alu 0 312 1 669 191 23 118 chr4 30320105 30320288 -153968374 + MER4D LTR ERV1 722 882 -21 2258 43 4 0 chr4 30320289 30320568 -153968094 + AluY SINE Alu 1 280 -31 207 0 0 0 chr4 30320571 30320594 -153968068 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2089 106 0 0 chr4 30320814 30321106 -153967556 + AluSx SINE Alu 1 292 -20 189 0 0 0 chr4 30321156 30321177 -153967485 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 287 273 0 61 chr4 30321640 30321772 -153966890 - L2 LINE L2 -223 3049 2926 696 212 106 20 chr4 30322047 30322100 -153966562 - L1MC4 LINE L1 -399 7643 7596 489 34 0 0 chr4 30322100 30322159 -153966503 + (TCTA)n Simple_repeat Simple_repeat 1 59 0 696 212 106 20 chr4 30322159 30322303 -153966359 - L1MC4 LINE L1 -446 7596 7429 2182 109 0 0 chr4 30322854 30323156 -153965506 + AluSx SINE Alu 1 302 -10 599 185 17 34 chr4 30323156 30323275 -153965387 - FLAM_A SINE Alu -16 117 1 620 266 18 53 chr4 30323281 30323507 -153965155 + L2 LINE L2 3095 3312 -1 2011 119 3 0 chr4 30323873 30324168 -153964494 + AluSx SINE Alu 2 297 -15 340 244 131 50 chr4 30324698 30324858 -153963804 + MIR SINE MIR 89 261 -1 2108 122 0 0 chr4 30324934 30325230 -153963432 - AluSx SINE Alu -16 296 1 21 36 0 0 chr4 30325310 30325338 -153963324 + AT_rich Low_complexity Low_complexity 1 28 0 198 77 19 39 chr4 30325432 30325484 -153963178 + (TTTTTA)n Simple_repeat Simple_repeat 3 53 0 1934 210 60 29 chr4 30325585 30326071 -153962591 - L1ME1 LINE L1 -279 5887 5387 2142 116 0 10 chr4 30326071 30326381 -153962281 - AluSx SINE Alu -5 307 1 2372 94 0 0 chr4 30326381 30326688 -153961974 - AluSc SINE Alu -1 308 1 1825 129 14 7 chr4 30326794 30327118 -153961544 - AluSx SINE Alu 0 333 8 854 150 0 0 chr4 30327609 30327736 -153960926 + FLAM_C SINE Alu 1 127 -6 2067 52 37 80 chr4 30327757 30328081 -153960581 + AluY SINE Alu 1 310 -1 535 221 111 102 chr4 30328164 30328252 -153960410 - MIR SINE MIR -33 229 143 2104 100 0 7 chr4 30328252 30328543 -153960119 - AluSg SINE Alu -21 289 1 535 221 111 102 chr4 30328543 30328680 -153959982 - MIR SINE MIR -119 143 2 2046 112 0 10 chr4 30328946 30329249 -153959413 - AluSq SINE Alu -13 300 1 1840 139 0 27 chr4 30329257 30329552 -153959110 - AluSx SINE Alu -25 287 1 563 152 0 0 chr4 30329552 30329631 -153959031 - AluJ/FLAM SINE Alu -230 82 4 1858 139 10 7 chr4 30330815 30331110 -153957552 + AluSx SINE Alu 1 296 -16 32 0 0 0 chr4 30331220 30331252 -153957410 + AT_rich Low_complexity Low_complexity 1 32 0 545 147 0 20 chr4 30331257 30331359 -153957303 + AluJb SINE Alu 208 307 -5 1998 106 0 7 chr4 30331359 30331643 -153957019 - AluSx SINE Alu -30 282 1 1799 274 183 20 chr4 30331775 30332071 -153956591 + L2 LINE L2 1772 2018 -1295 869 225 120 0 chr4 30332071 30332271 -153956391 + MER58A DNA MER1_type 1 224 0 1799 274 183 20 chr4 30332271 30333030 -153955632 + L2 LINE L2 2018 2997 -316 898 91 8 0 chr4 30333036 30333157 -153955505 - AluSq/x SINE Alu -179 133 12 1771 164 3 7 chr4 30333171 30333481 -153955181 - AluSc SINE Alu 0 309 1 571 133 22 172 chr4 30333774 30333954 -153954708 - L2 LINE L2 -50 3263 3111 1476 156 28 38 chr4 30333975 30334295 -153954367 + L1MC2 LINE L1 6025 6341 -3 213 65 0 0 chr4 30334316 30334347 -153954315 + (A)n Simple_repeat Simple_repeat 1 31 0 221 284 21 84 chr4 30335078 30335173 -153953489 - L2 LINE L2 -56 3216 3128 1411 234 46 9 chr4 30335236 30335414 -153953248 + MLT1A2 LTR MaLR 1 171 -203 297 0 0 0 chr4 30335414 30335447 -153953215 + (TC)n Simple_repeat Simple_repeat 2 34 0 1411 234 46 9 chr4 30335447 30335618 -153953044 + MLT1A2 LTR MaLR 171 363 -11 346 349 34 0 chr4 30336060 30336203 -153952459 + MIR SINE MIR 23 176 -32 799 226 12 0 chr4 30336208 30336372 -153952290 + L1ME LINE L1 5504 5669 -493 2139 89 7 0 chr4 30336373 30336809 -153951853 + AluSp SINE Alu 1 438 0 4759 113 9 11 chr4 30336816 30337874 -153950788 + L1MA3 LINE L1 4859 6092 -213 1921 88 3 103 chr4 30338070 30338401 -153950261 + AluSc SINE Alu 1 298 -11 1290 173 90 25 chr4 30338406 30338683 -153949979 - AluJb SINE Alu -16 296 2 275 256 135 38 chr4 30339542 30339675 -153948987 + MIR SINE MIR 46 191 -71 1560 190 31 0 chr4 30339792 30340081 -153948581 + AluJo SINE Alu 1 298 -14 804 140 0 22 chr4 30340083 30340219 -153948443 + AluJo/FLAM SINE Alu 1 133 -169 2144 108 13 3 chr4 30340219 30340526 -153948136 + AluSg SINE Alu 1 310 0 535 306 52 5 chr4 30340887 30341080 -153947582 - MIR SINE MIR -42 220 19 1750 95 0 28 chr4 30341124 30341204 -153947458 + AluSx SINE Alu 60 141 -171 2360 63 3 0 chr4 30341204 30341504 -153947158 + AluY SINE Alu 1 301 -10 1750 95 0 28 chr4 30341504 30341675 -153946987 + AluSx SINE Alu 141 304 -8 744 146 24 0 chr4 30342016 30342139 -153946523 - FLAM_A SINE Alu -4 129 4 185 271 84 56 chr4 30342893 30343000 -153945662 - MIR SINE MIR -116 146 37 362 193 0 12 chr4 30343041 30343124 -153945538 + GA-rich Low_complexity Low_complexity 5 86 0 550 255 138 11 chr4 30344205 30344393 -153944269 + MIR SINE MIR 9 220 -42 23 0 0 0 chr4 30344654 30344677 -153943985 + AT_rich Low_complexity Low_complexity 1 23 0 747 154 0 8 chr4 30344685 30344802 -153943860 + FLAM_C SINE Alu 10 125 -18 375 234 109 63 chr4 30344840 30345015 -153943647 - L1ME3 LINE L1 -70 6092 5910 245 167 125 0 chr4 30345016 30345064 -153943598 + MER63B DNA MER1_type 1 54 -382 491 178 0 9 chr4 30345071 30345178 -153943484 + GA-rich Low_complexity Low_complexity 3 108 0 1322 228 41 33 chr4 30345178 30345215 -153943447 + MER63B DNA MER1_type 40 75 -987 2432 56 0 0 chr4 30345215 30345517 -153943145 - AluY SINE Alu -9 302 1 1322 228 41 33 chr4 30345517 30345873 -153942789 + MER63B DNA MER1_type 75 436 0 1373 218 50 82 chr4 30345873 30345947 -153942715 - L1ME3 LINE L1 -246 5916 5841 1639 183 7 0 chr4 30345947 30346237 -153942425 - AluJb SINE Alu -20 292 1 1373 218 50 82 chr4 30346237 30346685 -153941977 - L1ME3 LINE L1 -321 5841 5411 473 167 0 0 chr4 30346707 30346779 -153941883 - AluJ/FLAM SINE Alu -239 73 2 386 319 34 8 chr4 30346784 30346903 -153941759 - L1ME4a LINE L1 -5 6116 5995 336 210 190 0 chr4 30346918 30347018 -153941644 - L1ME4a LINE L1 -237 5884 5766 1873 114 62 3 chr4 30347255 30347544 -153941118 + AluSx SINE Alu 1 306 -6 1003 144 0 17 chr4 30347544 30347717 -153940945 + AluSc SINE Alu 132 301 -8 518 224 121 24 chr4 30347806 30347971 -153940691 + MIR SINE MIR 32 212 -50 1734 131 33 33 chr4 30348930 30349235 -153939427 - AluSq SINE Alu -6 307 3 317 347 67 20 chr4 30349269 30349569 -153939093 + L2 LINE L2 1804 2117 -1197 440 283 18 60 chr4 30350266 30350348 -153938314 + MER20B DNA MER1_type 95 168 -615 1995 122 17 0 chr4 30350348 30350643 -153938019 + AluSx SINE Alu 3 302 -10 440 283 18 60 chr4 30350643 30350726 -153937936 + MER20B DNA MER1_type 168 253 -530 2022 116 10 0 chr4 30350726 30351019 -153937643 + AluSx SINE Alu 1 296 -16 364 323 83 47 chr4 30351221 30351413 -153937249 + MER20B DNA MER1_type 355 553 -230 280 400 44 0 chr4 30351547 30351707 -153936955 + L2 LINE L2 3076 3242 -30 635 180 29 43 chr4 30352455 30352594 -153936068 - FLAM_C SINE Alu -2 141 5 310 273 148 23 chr4 30352597 30352725 -153935937 + MIR SINE MIR 113 256 -6 1829 138 7 10 chr4 30352941 30353245 -153935417 + AluJo SINE Alu 1 303 -9 484 234 81 24 chr4 30353481 30353605 -153935057 + L2 LINE L2 3142 3272 0 329 138 31 0 chr4 30354491 30354556 -153934106 + GA-rich Low_complexity Low_complexity 2 68 0 27 62 0 0 chr4 30354579 30354627 -153934035 + AT_rich Low_complexity Low_complexity 1 48 0 1736 121 0 4 chr4 30354799 30355048 -153933614 + AluSq SINE Alu 1 248 -65 27 0 0 0 chr4 30355266 30355293 -153933369 + AT_rich Low_complexity Low_complexity 1 27 0 330 127 48 55 chr4 30355317 30355389 -153933273 + (TATAA)n Simple_repeat Simple_repeat 1 72 -494 1866 135 0 7 chr4 30355389 30355686 -153932976 - AluSx SINE Alu -17 295 1 330 127 48 55 chr4 30355686 30355887 -153932775 + (TATAA)n Simple_repeat Simple_repeat 72 566 0 436 163 60 36 chr4 30355950 30356156 -153932506 + (TATAA)n Simple_repeat Simple_repeat 1 210 0 1583 186 7 0 chr4 30356260 30356551 -153932111 + AluJb SINE Alu 6 298 -14 299 264 48 40 chr4 30356613 30356738 -153931924 - L1M4 LINE L1 -387 5791 5666 2102 110 7 0 chr4 30356813 30357114 -153931548 - AluSx SINE Alu -1 311 9 460 324 86 33 chr4 30357736 30357946 -153930716 - L1MEd LINE L1 -5054 1065 845 853 200 17 6 chr4 30358215 30358440 -153930222 - AluJb SINE Alu 0 335 109 1713 174 10 3 chr4 30358522 30358821 -153929841 - AluJo SINE Alu -11 301 1 295 295 33 25 chr4 30359242 30359364 -153929298 + MIR SINE MIR 93 215 -47 1802 106 4 15 chr4 30359539 30359813 -153928849 + AluSx SINE Alu 1 271 -41 1784 134 7 14 chr4 30359941 30360262 -153928400 + AluSx SINE Alu 1 319 0 716 228 0 0 chr4 30360298 30360425 -153928237 + AluJo SINE Alu 1 127 -175 1134 174 5 10 chr4 30360441 30360642 -153928020 + AluJb SINE Alu 1 200 -112 225 0 0 0 chr4 30360781 30360806 -153927856 + (T)n Simple_repeat Simple_repeat 1 25 0 1295 33 5 27 chr4 30361498 30361682 -153926980 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 812 168 7 27 chr4 30361796 30361945 -153926717 + AluJo SINE Alu 137 282 -30 227 79 26 0 chr4 30361947 30361985 -153926677 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1960 131 3 16 chr4 30362076 30362389 -153926273 - AluSx SINE Alu -3 309 1 258 256 61 12 chr4 30362460 30362542 -153926120 - MIR SINE MIR 0 262 177 253 261 65 22 chr4 30362559 30362651 -153926011 + MIR SINE MIR 142 237 -25 252 268 179 27 chr4 30362675 30362787 -153925875 - MIR SINE MIR -105 157 29 1400 173 87 10 chr4 30363623 30363912 -153924750 - AluJo SINE Alu 0 312 2 387 0 0 0 chr4 30363976 30364019 -153924643 + (TG)n Simple_repeat Simple_repeat 2 44 0 758 206 40 58 chr4 30364029 30364252 -153924410 - L1ME1 LINE L1 -5 6161 5943 2035 103 14 0 chr4 30364257 30364548 -153924114 - AluSx SINE Alu -17 295 1 1021 117 7 0 chr4 30364672 30364817 -153923845 - AluSq/x SINE Alu -167 146 1 22 56 0 0 chr4 30364870 30364906 -153923756 + AT_rich Low_complexity Low_complexity 1 36 0 1708 118 46 102 chr4 30364965 30365288 -153923374 + MER7A DNA MER2_type 1 303 -43 2068 120 3 25 chr4 30365290 30365606 -153923056 - AluSg SINE Alu -1 309 1 686 179 247 12 chr4 30365606 30365768 -153922894 - AluSc SINE Alu -108 201 2 459 252 243 0 chr4 30365768 30365974 -153922688 + L2 LINE L2 3051 3306 -7 866 197 0 0 chr4 30365975 30366127 -153922535 + AluJb SINE Alu 138 289 -23 1939 121 7 0 chr4 30366353 30366658 -153922004 - AluSq SINE Alu 0 307 1 459 224 6 126 chr4 30366862 30366928 -153921734 + MIR SINE MIR 2 74 -188 543 234 138 0 chr4 30366928 30367073 -153921589 - FRAM SINE Alu -1 165 1 459 224 6 126 chr4 30367073 30367143 -153921519 + MIR SINE MIR 74 113 -149 1737 129 6 31 chr4 30367143 30367460 -153921202 - AluSg SINE Alu -1 309 1 459 224 6 126 chr4 30367460 30367505 -153921157 + MIR SINE MIR 113 162 -100 1958 144 0 0 chr4 30367608 30367913 -153920749 + AluSq SINE Alu 2 306 -7 368 308 99 17 chr4 30368020 30368192 -153920470 + MIR SINE MIR 7 192 -70 1991 143 7 0 chr4 30368363 30368670 -153919992 + AluSx SINE Alu 3 311 -1 281 293 96 60 chr4 30368842 30369009 -153919653 - L3 LINE CR1 -72 1505 1333 2259 67 7 3 chr4 30369391 30369690 -153918972 - AluY SINE Alu -11 300 1 833 270 91 59 chr4 30369965 30370404 -153918258 - MARNA DNA Mariner -68 518 60 2244 94 10 0 chr4 30370404 30370711 -153917951 - AluSx SINE Alu -2 310 1 833 270 91 59 chr4 30370711 30370764 -153917898 - MARNA DNA Mariner -526 60 10 1911 129 13 19 chr4 30371266 30371575 -153917087 - AluSx SINE Alu -5 307 1 2228 95 3 0 chr4 30372004 30372300 -153916362 + AluSg SINE Alu 1 297 -13 2252 94 3 0 chr4 30372592 30372890 -153915772 + AluSx SINE Alu 5 303 -9 1121 148 0 0 chr4 30372890 30373066 -153915596 + AluSp SINE Alu 134 309 -4 244 222 37 0 chr4 30373067 30373121 -153915541 - MIR SINE MIR -165 97 42 646 215 7 22 chr4 30373473 30373608 -153915054 + MIR SINE MIR 32 164 -98 204 40 0 0 chr4 30373746 30373771 -153914891 + (T)n Simple_repeat Simple_repeat 1 25 0 625 162 86 0 chr4 30373784 30373889 -153914773 + AluSg SINE Alu 2 115 -195 306 155 8 59 chr4 30373899 30373998 -153914664 - Alu SINE Alu 0 302 243 817 263 48 82 chr4 30374574 30374928 -153913734 + L2 LINE L2 2931 3272 0 563 194 56 0 chr4 30375019 30375127 -153913535 + FRAM SINE Alu 1 113 -63 660 143 0 0 chr4 30375234 30375374 -153913288 + (CA)n Simple_repeat Simple_repeat 2 141 0 182 45 0 0 chr4 30375673 30375695 -153912967 - MIR SINE MIR -119 143 122 2071 103 13 0 chr4 30375986 30376286 -153912376 - AluSp SINE Alu -9 304 1 968 172 0 11 chr4 30376695 30376869 -153911793 - AluJb SINE Alu -4 308 137 199 358 150 8 chr4 30376872 30376992 -153911670 - MER5B DNA MER1_type -39 139 3 386 230 115 0 chr4 30377011 30377098 -153911564 + MER5A DNA MER1_type 10 106 -83 466 197 98 23 chr4 30377438 30377570 -153911092 + MER51B LTR ERV1 1 142 -235 1813 136 15 67 chr4 30377624 30377889 -153910773 + MER51B LTR ERV1 64 341 -36 252 0 0 0 chr4 30377889 30377917 -153910745 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2044 84 3 28 chr4 30377925 30378209 -153910453 - AluSx SINE Alu -35 277 1 1813 136 15 67 chr4 30378209 30378265 -153910397 + MER51B LTR ERV1 348 377 0 623 218 6 86 chr4 30378445 30378572 -153910090 - MER5B DNA MER1_type 0 178 67 2135 104 7 0 chr4 30378572 30378870 -153909792 - AluSx SINE Alu -12 300 1 623 218 6 86 chr4 30378870 30378916 -153909746 - MER5B DNA MER1_type -111 67 19 2033 116 3 19 chr4 30378985 30379295 -153909367 - AluSx SINE Alu -7 305 1 1727 156 31 3 chr4 30379297 30379585 -153909077 - AluSx SINE Alu -16 296 1 569 165 34 117 chr4 30379712 30379918 -153908744 + MER53 DNA DNA 1 189 0 2050 106 3 0 chr4 30380497 30380809 -153907853 + AluSx SINE Alu 1 313 0 380 299 128 62 chr4 30380843 30381531 -153907131 - L2 LINE L2 -76 3196 2450 232 330 31 10 chr4 30381577 30381674 -153906988 + L2 LINE L2 2251 2349 -965 757 185 0 0 chr4 30381707 30381826 -153906836 + AluSq/x SINE Alu 2 120 -192 27 0 0 0 chr4 30381826 30381853 -153906809 + AT_rich Low_complexity Low_complexity 1 27 0 787 193 158 68 chr4 30381853 30382145 -153906517 - MER34 LTR ERV1 -12 530 202 2080 118 0 0 chr4 30382145 30382441 -153906221 + AluSx SINE Alu 3 298 -14 787 193 158 68 chr4 30382441 30382655 -153906007 - MER34 LTR ERV1 -340 202 9 242 311 68 61 chr4 30382750 30382882 -153905780 + MIR3 SINE MIR 55 187 -21 533 338 93 4 chr4 30382908 30383145 -153905517 + MIR SINE MIR 3 260 -2 2104 120 3 3 chr4 30383161 30383470 -153905192 + AluSc SINE Alu 1 309 0 955 257 41 8 chr4 30383557 30383802 -153904860 - MIR SINE MIR 0 262 10 1348 136 0 9 chr4 30383835 30384049 -153904613 + AluSx SINE Alu 1 212 -100 228 74 0 0 chr4 30384049 30384076 -153904586 + AluSg/x SINE Alu 76 102 -198 4033 117 98 27 chr4 30384076 30385072 -153903590 - MER11A LTR ERVK 0 1266 6 1133 115 5 50 chr4 30385072 30385272 -153903390 + AluSg/x SINE Alu 95 285 -27 315 49 0 0 chr4 30385272 30385313 -153903349 + (CA)n Simple_repeat Simple_repeat 2 42 0 1363 181 100 0 chr4 30385438 30385708 -153902954 + AluJo SINE Alu 1 297 -15 343 118 20 0 chr4 30385809 30385860 -153902802 - U7 snRNA snRNA -2 61 10 2200 94 0 25 chr4 30385875 30386195 -153902467 - AluSx SINE Alu 0 312 1 2057 124 0 19 chr4 30386205 30386519 -153902143 - AluSx SINE Alu 0 312 5 1725 162 7 10 chr4 30386523 30386820 -153901842 - AluJo SINE Alu -16 296 1 1613 172 0 36 chr4 30386849 30387151 -153901511 + AluJo SINE Alu 1 291 -21 1927 126 0 24 chr4 30387154 30387447 -153901215 + AluSx SINE Alu 2 287 -25 444 307 6 18 chr4 30387481 30387510 -153901152 + MER103 DNA DNA 2 30 -136 1551 53 0 0 chr4 30387510 30387698 -153900964 + L1PA5 LINE L1 5962 6149 -5 444 307 6 18 chr4 30387698 30387834 -153900828 + MER103 DNA DNA 30 165 -1 808 172 0 0 chr4 30387980 30388114 -153900548 - AluJo SINE Alu -178 134 1 184 324 59 15 chr4 30388292 30388360 -153900302 - MER5B DNA MER1_type -39 139 69 310 268 42 0 chr4 30388426 30388497 -153900165 + MER5A DNA MER1_type 3 76 -113 1995 131 0 3 chr4 30388497 30388795 -153899867 + AluSx SINE Alu 1 297 -15 447 209 209 80 chr4 30388821 30388930 -153899732 + MER102a DNA MER1_type 144 282 -1135 489 34 0 0 chr4 30388930 30388989 -153899673 + (TTATA)n Simple_repeat Simple_repeat 1 59 0 447 209 209 80 chr4 30388989 30389042 -153899620 + MER102a DNA MER1_type 282 327 -3 282 216 81 34 chr4 30389137 30389285 -153899377 - L1ME4a LINE L1 -1 6120 5966 1487 185 7 30 chr4 30389700 30390003 -153898659 + AluJb SINE Alu 1 296 -16 2139 103 10 7 chr4 30390120 30390421 -153898241 + AluSx SINE Alu 1 302 -10 180 77 0 0 chr4 30390473 30390499 -153898163 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2051 103 0 0 chr4 30390503 30390785 -153897877 - AluSg1 SINE Alu -27 282 1 1353 181 15 7 chr4 30390788 30391059 -153897603 - AluJo SINE Alu -15 297 25 1298 172 26 63 chr4 30391088 30391391 -153897271 - AluJb SINE Alu -20 292 1 1889 158 7 0 chr4 30391455 30391765 -153896897 - AluSx SINE Alu 0 312 1 703 311 111 26 chr4 30391786 30391972 -153896690 - L3 LINE CR1 -4 1573 1404 2205 88 0 10 chr4 30391972 30392267 -153896395 + AluSx SINE Alu 1 292 -20 703 311 111 26 chr4 30392267 30392466 -153896196 - L3 LINE CR1 -173 1404 1155 308 214 41 41 chr4 30392618 30392716 -153895946 - MLT1K LTR MaLR -2 586 489 2297 68 10 16 chr4 30392754 30393064 -153895598 + AluY SINE Alu 1 308 -3 1570 162 236 78 chr4 30393099 30393220 -153895442 - LTR29 LTR ERV1 0 622 521 2022 113 3 3 chr4 30393220 30393511 -153895151 - AluSx SINE Alu -21 291 1 1570 162 236 78 chr4 30393511 30393686 -153894976 - LTR29 LTR ERV1 -101 521 375 2093 122 0 3 chr4 30393686 30393990 -153894672 + AluSx SINE Alu 1 303 -9 1570 162 236 78 chr4 30393990 30394229 -153894433 - LTR29 LTR ERV1 -247 375 1 1962 133 7 3 chr4 30394328 30394629 -153894033 + AluSx SINE Alu 1 302 -10 865 138 17 72 chr4 30394629 30394810 -153893852 + AluJb SINE Alu 134 304 -8 526 329 79 20 chr4 30394823 30395115 -153893547 - MLT1K LTR MaLR -244 344 36 1976 140 0 25 chr4 30395140 30395461 -153893201 - AluSq SINE Alu 0 313 1 286 340 0 0 chr4 30395462 30395562 -153893100 - MIR SINE MIR -102 160 61 709 112 0 0 chr4 30395562 30395660 -153893002 + AluS SINE Alu 2 99 -214 336 143 0 0 chr4 30395908 30395964 -153892698 + (A)n Simple_repeat Simple_repeat 1 56 0 2075 96 3 3 chr4 30396579 30396870 -153891792 + AluSg SINE Alu 1 291 -19 477 0 0 0 chr4 30396873 30396926 -153891736 + (CA)n Simple_repeat Simple_repeat 2 54 0 4942 78 38 0 chr4 30397197 30397860 -153890802 - LTR12 LTR ERV1 0 688 1 575 250 30 0 chr4 30398245 30398377 -153890285 + MER113 DNA MER1_type? 234 369 -152 2212 94 0 3 chr4 30398458 30398757 -153889905 + AluSc SINE Alu 1 298 -11 328 221 39 0 chr4 30398925 30399002 -153889660 - MER45A DNA AcHobo 0 178 99 2264 92 0 10 chr4 30399003 30399317 -153889345 + AluSp SINE Alu 1 311 -2 2236 88 13 0 chr4 30399340 30399646 -153889016 + AluSx SINE Alu 1 310 -2 406 336 0 0 chr4 30399651 30399755 -153888907 - MER45A DNA AcHobo -71 107 4 877 154 0 0 chr4 30399921 30400064 -153888598 - FLAM_C SINE Alu 0 143 1 256 291 12 139 chr4 30400138 30400187 -153888475 - L2 LINE L2 -83 3189 3135 1869 136 20 13 chr4 30400187 30400488 -153888174 - AluSx SINE Alu -9 303 1 256 291 12 139 chr4 30400488 30400610 -153888052 - L2 LINE L2 -137 3135 3040 1735 150 3 30 chr4 30400691 30400991 -153887671 + AluJb SINE Alu 1 292 -20 2101 112 16 0 chr4 30400993 30401296 -153887366 + AluSx SINE Alu 1 308 -4 3856 107 37 90 chr4 30401368 30401915 -153886747 + LTR8 LTR ERV1 1 501 -190 1531 79 120 0 chr4 30401915 30402131 -153886531 + AluY SINE Alu 47 288 -23 3856 107 37 90 chr4 30402131 30402313 -153886349 + LTR8 LTR ERV1 501 691 0 1746 143 0 14 chr4 30402403 30402690 -153885972 + AluSx SINE Alu 1 283 -29 777 148 0 42 chr4 30402728 30402870 -153885792 + FLAM_C SINE Alu 5 140 -3 1047 136 0 0 chr4 30403906 30404068 -153884594 + AluSg/x SINE Alu 139 300 -12 2130 119 3 0 chr4 30404280 30404590 -153884072 - AluSx SINE Alu -1 311 1 807 146 0 76 chr4 30404704 30404848 -153883814 - FLAM_C SINE Alu -17 116 1 1621 158 0 52 chr4 30406028 30406319 -153882343 - AluSx SINE Alu -8 304 29 2303 110 0 3 chr4 30406843 30407152 -153881510 + AluSx SINE Alu 1 308 -4 24 0 0 0 chr4 30407860 30407884 -153880778 + AT_rich Low_complexity Low_complexity 1 24 0 445 235 12 100 chr4 30407888 30407942 -153880720 + L2 LINE L2 3159 3216 -97 2113 118 11 0 chr4 30407942 30408252 -153880410 + AluSx SINE Alu 1 313 0 445 235 12 100 chr4 30408252 30408271 -153880391 + L2 LINE L2 3216 3235 -78 828 191 0 0 chr4 30408271 30408397 -153880265 - FLAM_A SINE Alu -3 130 5 445 235 12 100 chr4 30408397 30408491 -153880171 + L2 LINE L2 3235 3313 0 915 201 0 18 chr4 30409403 30409572 -153879090 + FRAM SINE Alu 1 166 0 837 177 0 108 chr4 30409577 30409780 -153878882 + AluJo SINE Alu 120 300 -12 220 211 0 0 chr4 30409844 30409882 -153878780 - L2 LINE L2 -51 3262 3225 1106 239 13 32 chr4 30410078 30410454 -153878208 + MER113 DNA MER1_type? 1 369 -152 747 179 0 8 chr4 30410505 30410622 -153878040 + AluJ SINE Alu 2 117 -195 1208 133 6 0 chr4 30410623 30410796 -153877866 - AluSq SINE Alu -4 309 136 1098 122 11 75 chr4 30410802 30410829 -153877833 + AluJ SINE Alu 108 135 -172 2104 121 30 3 chr4 30410829 30411126 -153877536 + AluSx SINE Alu 3 307 -5 1098 122 11 75 chr4 30411126 30411310 -153877352 + AluJ SINE Alu 135 307 0 189 0 0 0 chr4 30411330 30411351 -153877311 + (TTTTA)n Simple_repeat Simple_repeat 3 23 0 895 138 0 38 chr4 30411352 30411512 -153877150 - L1PA10 LINE L1 -20 6148 5995 1077 141 86 0 chr4 30411673 30411871 -153876791 - MLT1B LTR MaLR 0 390 176 1142 158 0 0 chr4 30411871 30412036 -153876626 - AluSg/x SINE Alu -18 294 130 2185 116 0 3 chr4 30412042 30412336 -153876326 - AluSx SINE Alu -19 293 1 182 250 28 0 chr4 30412598 30412634 -153876028 + MER5B DNA MER1_type 9 45 -133 1127 192 28 14 chr4 30412634 30412848 -153875814 - AluJo SINE Alu -9 303 87 1982 142 14 0 chr4 30412886 30413174 -153875488 + AluJb SINE Alu 1 292 -20 1203 209 112 43 chr4 30413195 30413472 -153875190 + AluJo SINE Alu 2 297 -5 357 333 17 0 chr4 30413473 30413590 -153875072 + MER5B DNA MER1_type 57 175 -3 224 181 24 36 chr4 30413894 30413948 -153874714 + (TA)n Simple_repeat Simple_repeat 2 56 -27 2344 98 3 0 chr4 30413948 30414243 -153874419 - AluSp SINE Alu -17 296 1 224 181 24 36 chr4 30414243 30414271 -153874391 + (TA)n Simple_repeat Simple_repeat 56 83 0 425 186 233 0 chr4 30414292 30414378 -153874284 - FLAM_A SINE Alu -36 106 1 1750 191 0 16 chr4 30414413 30414717 -153873945 - AluJo SINE Alu -12 300 2 1565 184 42 0 chr4 30414729 30415017 -153873645 - AluJb SINE Alu -12 300 1 361 393 78 16 chr4 30415018 30415275 -153873387 - L2 LINE L2 -14 3258 2986 242 200 0 0 chr4 30415325 30415370 -153873292 + L2 LINE L2 3262 3306 -7 311 324 152 25 chr4 30415372 30415807 -153872855 - L2 LINE L2 -453 2861 2372 25 0 0 0 chr4 30415826 30415851 -153872811 + AT_rich Low_complexity Low_complexity 1 25 0 2178 141 0 0 chr4 30415851 30416163 -153872499 - AluJo SINE Alu 0 312 1 651 246 22 39 chr4 30416286 30416465 -153872197 + MIR SINE MIR 65 240 -22 323 289 33 0 chr4 30416516 30416606 -153872056 - MIR SINE MIR -85 177 85 602 152 0 45 chr4 30416645 30416757 -153871905 - AluSx SINE Alu 0 310 204 2200 82 41 10 chr4 30416757 30417051 -153871611 - AluYa5 SINE Alu -8 303 1 1563 113 9 5 chr4 30417053 30417265 -153871397 - AluSx SINE Alu -98 214 2 1338 179 19 4 chr4 30417707 30418026 -153870636 - MLT1A1 LTR MaLR 0 365 3 2212 127 7 0 chr4 30418284 30418592 -153870070 - AluSx SINE Alu -2 310 1 1351 133 25 0 chr4 30418849 30418891 -153869771 + AluSp SINE Alu 85 124 -193 2424 95 3 9 chr4 30418891 30419206 -153869456 + AluSp SINE Alu 1 313 0 1351 133 25 0 chr4 30419206 30419391 -153869271 + AluSp SINE Alu 124 317 0 289 0 0 0 chr4 30419359 30419416 -153869246 + (TAA)n Simple_repeat Simple_repeat 2 58 0 868 173 0 0 chr4 30419428 30419561 -153869101 + FLAM_C SINE Alu 1 133 -10 611 199 12 35 chr4 30419620 30419778 -153868884 - MER96B DNA MER1_type? -1 416 261 2184 117 0 0 chr4 30419778 30420061 -153868601 - AluSx SINE Alu -29 283 1 611 199 12 35 chr4 30420061 30420073 -153868589 - MER96B DNA MER1_type? -156 261 250 471 300 196 19 chr4 30421017 30421200 -153867462 + L2 LINE L2 2349 2498 -815 584 191 27 0 chr4 30421200 30421310 -153867352 - MER81 DNA DNA 0 114 2 471 300 196 19 chr4 30421310 30421749 -153866913 + L2 LINE L2 2498 3084 -229 1222 130 0 0 chr4 30421855 30422017 -153866645 + AluSx SINE Alu 2 163 -149 977 181 86 19 chr4 30422261 30422471 -153866191 - AluJo SINE Alu -1 311 88 2126 141 3 3 chr4 30422633 30422945 -153865717 + AluSx SINE Alu 1 312 0 23 0 0 0 chr4 30423473 30423496 -153865166 + AT_rich Low_complexity Low_complexity 1 23 0 2106 151 0 0 chr4 30423496 30423795 -153864867 - AluSx SINE Alu -13 299 1 2428 55 34 7 chr4 30423797 30424089 -153864573 - AluY SINE Alu -11 300 1 1866 120 58 0 chr4 30424143 30424441 -153864221 - AluSx SINE Alu 0 312 1 21 36 0 0 chr4 30424714 30424742 -153863920 + AT_rich Low_complexity Low_complexity 1 28 0 2170 117 7 13 chr4 30424946 30425254 -153863408 - AluSp SINE Alu -7 306 1 2003 151 0 6 chr4 30425289 30425600 -153863062 + AluSx SINE Alu 1 309 -3 182 61 0 30 chr4 30425605 30425638 -153863024 + (TAAAAA)n Simple_repeat Simple_repeat 4 35 0 189 338 14 40 chr4 30426324 30426472 -153862190 - L2 LINE L2 -1201 2113 1970 2267 113 0 0 chr4 30426472 30426763 -153861899 + AluSg SINE Alu 1 291 -19 2289 125 0 0 chr4 30426786 30427098 -153861564 + AluSx SINE Alu 1 312 0 1003 185 28 32 chr4 30427565 30427781 -153860881 - MER20 DNA MER1_type 0 219 5 278 294 54 22 chr4 30428031 30428123 -153860539 + MIR SINE MIR 40 134 -128 239 167 0 0 chr4 30428473 30428521 -153860141 - MLT1A1 LTR MaLR -14 351 304 2309 110 0 0 chr4 30428521 30428861 -153859801 + AluSq SINE Alu 1 340 0 1313 182 13 63 chr4 30428874 30429031 -153859631 - MLT1A1 LTR MaLR -63 302 167 1627 149 8 0 chr4 30429031 30429273 -153859389 - AluSg/x SINE Alu -2 310 67 1313 182 13 63 chr4 30429273 30429433 -153859229 - MLT1A1 LTR MaLR -198 167 1 2136 116 3 0 chr4 30429540 30429825 -153858837 - AluY SINE Alu -25 286 1 1073 90 0 0 chr4 30429825 30429959 -153858703 - AluYb8 SINE Alu -184 134 1 371 344 92 40 chr4 30429971 30430198 -153858464 - L1ME LINE L1 -302 5819 5581 1766 110 12 0 chr4 30430223 30430468 -153858194 + AluSg SINE Alu 1 248 -62 1063 162 0 5 chr4 30430578 30430763 -153857899 + AluSg/x SINE Alu 128 311 -1 302 306 87 37 chr4 30431391 30431633 -153857029 - L1M2 LINE L1 -4852 1997 1744 554 231 75 15 chr4 30431675 30431809 -153856853 - FLAM_A SINE Alu 0 142 1 303 232 74 0 chr4 30432884 30432979 -153855683 + MIR SINE MIR 90 191 -71 1309 209 8 15 chr4 30433001 30433269 -153855393 - AluJo SINE Alu -23 289 24 2198 113 0 10 chr4 30433304 30433596 -153855066 + AluSg1 SINE Alu 1 289 -20 29 84 0 0 chr4 30433800 30433871 -153854791 + AT_rich Low_complexity Low_complexity 1 71 0 744 150 110 8 chr4 30434089 30434216 -153854446 - AluSq/x SINE Alu -171 141 2 274 299 55 8 chr4 30434217 30434344 -153854318 + Charlie8 DNA MER1_type 96 228 -2189 1368 172 28 88 chr4 30434398 30434718 -153853944 - AluJo SINE Alu -11 301 1 2071 108 14 0 chr4 30434770 30435048 -153853614 + AluSg SINE Alu 1 282 -28 384 22 0 0 chr4 30435048 30435093 -153853569 + (CA)n Simple_repeat Simple_repeat 2 46 0 1120 116 0 72 chr4 30435104 30435285 -153853377 + AluSg/x SINE Alu 137 304 -8 410 264 81 7 chr4 30436885 30437033 -153851629 + Charlie8 DNA MER1_type 118 276 -2141 2410 72 0 10 chr4 30437106 30437399 -153851263 - AluY SINE Alu -19 292 3 1514 149 138 0 chr4 30437426 30437694 -153850968 - AluSx SINE Alu -7 305 1 22 0 0 0 chr4 30437886 30437908 -153850754 + AT_rich Low_complexity Low_complexity 1 22 0 346 298 282 0 chr4 30438641 30438822 -153849840 - MIR SINE MIR -17 245 14 25 31 0 0 chr4 30439694 30439726 -153848936 + GC_rich Low_complexity Low_complexity 1 32 0 246 371 35 0 chr4 30440336 30440452 -153848210 + MIR SINE MIR 33 152 -56 761 202 0 0 chr4 30441896 30442015 -153846647 - FLAM_C SINE Alu -23 120 2 295 191 79 0 chr4 30442197 30442260 -153846402 + MIR SINE MIR 81 148 -114 365 252 108 18 chr4 30442354 30442465 -153846197 - L2 LINE L2 -9 3263 3143 204 139 0 23 chr4 30443021 30443064 -153845598 + (CCCCCA)n Simple_repeat Simple_repeat 5 46 0 361 276 166 20 chr4 30443265 30443464 -153845198 + MIR SINE MIR 14 241 -21 495 225 135 34 chr4 30443673 30443851 -153844811 - MIR SINE MIR 0 262 67 207 385 42 21 chr4 30444272 30444368 -153844294 - L2 LINE L2 -37 3235 3138 240 150 100 62 chr4 30444482 30444562 -153844100 - L1ME LINE L1 -475 5646 5564 2295 102 3 0 chr4 30444674 30444968 -153843694 - AluSq SINE Alu -18 295 1 425 270 120 40 chr4 30445243 30445443 -153843219 - MIR SINE MIR 0 262 47 2015 142 0 3 chr4 30445523 30445811 -153842851 - AluSq SINE Alu -26 287 1 2384 97 3 0 chr4 30445992 30446292 -153842370 - AluSq SINE Alu -9 304 4 2057 92 70 0 chr4 30447106 30447377 -153841285 - AluSg SINE Alu -20 290 1 283 267 67 27 chr4 30447513 30447588 -153841074 - L2 LINE L2 -39 3274 3197 305 246 94 58 chr4 30448550 30448688 -153839974 - MIR3 SINE MIR -11 197 55 2333 92 0 3 chr4 30449287 30449591 -153839071 - AluSp SINE Alu -10 303 1 196 255 75 75 chr4 30449644 30449738 -153838924 + MIR3 SINE MIR 79 172 -36 893 172 5 68 chr4 30450638 30450859 -153837803 - MER3 DNA MER1_type 0 209 3 686 102 102 55 chr4 30451025 30451152 -153837510 - FLAM_C SINE Alu 0 133 1 2182 138 3 0 chr4 30451353 30451664 -153836998 + AluSx SINE Alu 1 312 0 227 258 32 32 chr4 30451672 30451734 -153836928 - MER91A DNA MER1_type -134 62 1 286 260 87 47 chr4 30452292 30452419 -153836243 + MIR SINE MIR 119 250 -12 2302 81 37 0 chr4 30452494 30452789 -153835873 + AluSx SINE Alu 1 306 -6 825 160 0 0 chr4 30453255 30453405 -153835257 - L1MA4A LINE L1 -4 6299 6150 192 303 10 50 chr4 30453553 30453652 -153835010 + MIR SINE MIR 109 203 -59 1725 161 14 10 chr4 30454064 30454356 -153834306 + AluSx SINE Alu 1 293 -19 349 226 86 11 chr4 30455988 30456081 -153832581 - MIR SINE MIR -67 141 42 364 164 9 21 chr4 30456175 30456411 -153832251 + AluSx SINE Alu 1 294 -8 350 325 66 7 chr4 30457007 30457158 -153831504 - MLT1J LTR MaLR -343 168 9 272 326 163 31 chr4 30458823 30459019 -153829643 + L3 LINE CR1 1279 1500 -77 2084 125 0 3 chr4 30459143 30459454 -153829208 - AluSg SINE Alu 0 310 1 459 292 58 15 chr4 30459456 30459593 -153829069 + MIR SINE MIR 50 192 -70 353 184 116 21 chr4 30459634 30459827 -153828835 - Charlie5 DNA MER1_type -44 2568 2364 379 297 158 15 chr4 30459891 30460093 -153828569 + MIR SINE MIR 13 243 -19 250 244 12 12 chr4 30460648 30460734 -153827928 + (CTG)n Simple_repeat Simple_repeat 3 88 0 776 134 0 0 chr4 30462683 30462795 -153825867 - FLAM_C SINE Alu -23 120 9 23 0 0 0 chr4 30462807 30462830 -153825832 + AT_rich Low_complexity Low_complexity 1 23 0 275 146 0 0 chr4 30463324 30463365 -153825297 - MER45A DNA AcHobo -44 134 94 * 1612 179 150 43 chr4 30463360 30463529 -153825133 - MER45B DNA AcHobo -226 814 664 2111 113 0 0 chr4 30463529 30463822 -153824840 - AluSx SINE Alu -19 293 1 1612 179 150 43 chr4 30463822 30464066 -153824596 - MER45B DNA AcHobo -376 664 357 1909 93 7 18 chr4 30464108 30464388 -153824274 + AluSq SINE Alu 1 277 -36 231 311 264 5 chr4 30464507 30464700 -153823962 + MIR SINE MIR 8 250 -12 2230 101 0 0 chr4 30465036 30465334 -153823328 - AluSx SINE Alu -14 298 1 1825 155 23 0 chr4 30465728 30466032 -153822630 + AluSx SINE Alu 1 311 -1 812 203 7 0 chr4 30466144 30466297 -153822365 - FRAM SINE Alu -12 154 1 180 330 88 22 chr4 30466303 30466394 -153822268 - MIR SINE MIR -49 213 117 1951 123 0 0 chr4 30466610 30466928 -153821734 + AluSx SINE Alu 1 312 0 2106 124 0 0 chr4 30467165 30467472 -153821190 + AluSx SINE Alu 1 307 -5 1065 186 132 8 chr4 30468201 30468321 -153820341 + AluJb SINE Alu 1 105 -207 279 0 0 0 chr4 30468321 30468352 -153820310 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1065 186 132 8 chr4 30468352 30468473 -153820189 + AluJb SINE Alu 105 272 -40 1522 166 22 50 chr4 30468473 30468579 -153820083 + AluJo SINE Alu 1 108 -204 2262 81 0 16 chr4 30468579 30468889 -153819773 - AluSq SINE Alu -8 305 1 1522 166 22 50 chr4 30468889 30469102 -153819560 + AluJo SINE Alu 108 311 -1 2053 142 0 0 chr4 30469316 30469627 -153819035 - AluSx SINE Alu -1 311 1 1863 117 7 10 chr4 30469628 30469944 -153818718 - AluSx SINE Alu 0 312 1 2055 116 0 7 chr4 30470220 30470522 -153818140 + AluSx SINE Alu 2 301 -11 310 268 42 0 chr4 30470755 30470826 -153817836 + MER5A DNA MER1_type 3 76 -113 1727 158 10 7 chr4 30470826 30471118 -153817544 + AluSx SINE Alu 1 293 -19 276 201 151 7 chr4 30471213 30471352 -153817310 - AluSc SINE Alu -20 279 121 380 153 111 0 chr4 30471508 30471580 -153817082 - AluSc SINE Alu -44 255 176 821 118 0 0 chr4 30471584 30471703 -153816959 - AluJb SINE Alu -193 119 1 3784 142 10 10 chr4 30472120 30472738 -153815924 - L1PA15 LINE L1 -125 6040 5423 1545 170 7 20 chr4 30473904 30474210 -153814452 + AluSx SINE Alu 1 302 -10 188 182 68 23 chr4 30474547 30474591 -153814071 - MER5B DNA MER1_type -108 70 25 1239 99 0 0 chr4 30474791 30474952 -153813710 - AluSq SINE Alu -130 183 23 1276 204 38 14 chr4 30474969 30475258 -153813404 - AluJo SINE Alu -11 301 6 719 140 28 84 chr4 30475379 30475558 -153813104 - AluSg/x SINE Alu -25 284 116 293 225 6 129 chr4 30475569 30475747 -153812915 - AluSg/x SINE Alu -13 287 132 1844 127 4 4 chr4 30477501 30477776 -153810886 + AluSx SINE Alu 1 275 -37 180 0 0 0 chr4 30477783 30477803 -153810859 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 355 200 89 0 chr4 30477803 30477893 -153810769 + L1M4 LINE L1 4989 5086 -1060 831 169 69 12 chr4 30477894 30478054 -153810608 - FRAM SINE Alu -8 168 1 559 178 9 0 chr4 30478054 30478161 -153810501 + L1M4 LINE L1 5080 5187 -959 449 156 220 0 chr4 30478195 30478304 -153810358 - MER51C LTR ERV1 0 640 508 1268 120 0 5 chr4 30478308 30478492 -153810170 - AluSg/x SINE Alu -25 287 105 2173 107 0 0 chr4 30478969 30479267 -153809395 - AluSx SINE Alu -14 298 1 1803 123 32 32 chr4 30479562 30479876 -153808786 - AluSx SINE Alu 0 314 1 487 180 11 0 chr4 30480211 30480300 -153808362 - AluS SINE Alu -218 94 5 2152 88 10 3 chr4 30480358 30480652 -153808010 + AluSx SINE Alu 1 296 -16 281 266 35 71 chr4 30480652 30480821 -153807841 - HAL1 LINE L1 -42 2465 2303 324 194 16 31 chr4 30481056 30481185 -153807477 + CT-rich Low_complexity Low_complexity 4 130 0 315 209 196 88 chr4 30481191 30481339 -153807323 - HAL1 LINE L1 -817 1690 1527 371 221 108 49 chr4 30481373 30481591 -153807071 + MLT1H LTR MaLR 301 549 0 1588 155 0 82 chr4 30481776 30481907 -153806755 + AluJo SINE Alu 1 141 -171 1516 140 41 62 chr4 30481907 30482199 -153806463 + AluSx SINE Alu 1 286 -26 1588 155 0 82 chr4 30482199 30482386 -153806276 + AluJo SINE Alu 141 294 -18 2009 134 3 0 chr4 30482386 30482684 -153805978 - AluSq SINE Alu -12 301 3 24 0 0 0 chr4 30483684 30483708 -153804954 + AT_rich Low_complexity Low_complexity 1 24 0 306 303 36 72 chr4 30484196 30484391 -153804271 + L1ME LINE L1 4281 4468 -1678 1212 95 0 0 chr4 30484403 30484561 -153804101 + AluSg SINE Alu 1 158 -152 1357 173 0 0 chr4 30484569 30484817 -153803845 + AluJb SINE Alu 57 304 0 227 288 0 0 chr4 30484817 30484883 -153803779 + L1ME LINE L1 4989 5054 -1092 1904 100 50 11 chr4 30484887 30485167 -153803495 + AluSq SINE Alu 1 291 -22 30 0 0 0 chr4 30485167 30485197 -153803465 + AT_rich Low_complexity Low_complexity 1 30 0 261 318 68 9 chr4 30485377 30485597 -153803065 + L1ME LINE L1 5259 5491 -671 1981 130 13 0 chr4 30485598 30485898 -153802764 + AluSq SINE Alu 1 304 -9 2028 136 3 3 chr4 30485914 30486223 -153802439 + AluSx SINE Alu 1 309 -3 305 252 117 108 chr4 30486238 30486549 -153802113 + L1ME LINE L1 5504 5820 -350 2239 101 3 0 chr4 30486549 30486847 -153801815 - AluSx SINE Alu -13 299 1 305 252 117 108 chr4 30486847 30486876 -153801786 + L1ME LINE L1 5820 5847 -323 811 114 0 79 chr4 30486899 30487023 -153801639 + FLAM_C SINE Alu 1 114 -198 183 42 0 0 chr4 30487023 30487047 -153801615 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 811 114 0 79 chr4 30487047 30487062 -153801600 + FLAM_C SINE Alu 114 129 -183 297 0 0 0 chr4 30487205 30487238 -153801424 + (CA)n Simple_repeat Simple_repeat 2 34 0 1985 82 11 11 chr4 30487268 30487550 -153801112 - AluSc SINE Alu -3 306 25 1121 162 25 0 chr4 30487654 30487776 -153800886 + MER2 DNA MER2_type 136 266 -79 1857 154 3 0 chr4 30487776 30488074 -153800588 - AluSx SINE Alu -13 299 1 1121 162 25 0 chr4 30488074 30488149 -153800513 + MER2 DNA MER2_type 266 338 -7 907 148 29 135 chr4 30488742 30488809 -153799853 + MER20 DNA MER1_type 2 75 -144 1980 114 3 19 chr4 30488809 30489124 -153799538 + AluSg SINE Alu 1 310 0 907 148 29 135 chr4 30489124 30489300 -153799362 + MER20 DNA MER1_type 75 219 0 2153 85 10 10 chr4 30489310 30489616 -153799046 + AluSc SINE Alu 1 306 -3 297 0 0 0 chr4 30489646 30489679 -153798983 + (TG)n Simple_repeat Simple_repeat 2 34 0 183 42 0 0 chr4 30489837 30489861 -153798801 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 841 108 0 8 chr4 30489861 30489981 -153798681 - AluSg SINE Alu -191 119 1 306 303 36 72 chr4 30489993 30490188 -153798474 - L1 LINE L1 -1678 4468 4281 758 271 104 0 chr4 30490445 30490666 -153797996 - Charlie8 DNA MER1_type -2141 276 33 1978 130 3 24 chr4 30490765 30491118 -153797544 - MER4A LTR ERV1 0 664 261 664 111 0 10 chr4 30491118 30491217 -153797445 - MER4A LTR ERV1 -566 98 1 1740 164 31 68 chr4 30491589 30491734 -153796928 + MLT1B LTR MaLR 1 150 -240 2123 97 0 17 chr4 30491734 30492033 -153796629 - AluSx SINE Alu -12 300 7 1740 164 31 68 chr4 30492033 30492391 -153796271 + MLT1B LTR MaLR 150 390 0 1942 150 0 0 chr4 30492498 30492798 -153795864 + AluSx SINE Alu 1 300 -12 297 242 153 33 chr4 30492798 30492943 -153795719 - LTR16A LTR ERVL -97 360 182 705 137 43 81 chr4 30492981 30493142 -153795520 + MER20B DNA MER1_type 65 219 0 340 333 45 6 chr4 30493142 30493319 -153795343 - LTR16A1 LTR ERVL -255 202 19 1188 139 26 5 chr4 30493390 30493584 -153795078 + MSTA LTR MaLR 1 198 -230 27 0 0 0 chr4 30493584 30493611 -153795051 + AT_rich Low_complexity Low_complexity 1 27 0 1624 134 38 4 chr4 30493621 30493883 -153794779 + AluSx SINE Alu 1 271 -41 203 193 18 0 chr4 30493886 30493943 -153794719 + (TA)n Simple_repeat Simple_repeat 1 58 0 1552 148 12 8 chr4 30493966 30494210 -153794452 + MSTA LTR MaLR 184 428 0 642 259 45 25 chr4 30494210 30494411 -153794251 - MIR SINE MIR -38 224 20 243 0 0 0 chr4 30494913 30494940 -153793722 + (CA)n Simple_repeat Simple_repeat 2 28 0 286 235 111 12 chr4 30496506 30496587 -153792075 + MIR3 SINE MIR 111 199 -9 1283 200 97 29 chr4 30497103 30497286 -153791376 + MER58B DNA MER1_type 11 225 -2195 2267 93 0 3 chr4 30497286 30497599 -153791063 + AluSx SINE Alu 1 312 0 1283 200 97 29 chr4 30497599 30497725 -153790937 + MER58B DNA MER1_type 225 341 0 231 176 33 0 chr4 30498960 30499051 -153789611 + (TA)n Simple_repeat Simple_repeat 2 95 0 2175 91 3 0 chr4 30499163 30499450 -153789212 + AluSp SINE Alu 1 288 -25 189 0 0 0 chr4 30499456 30499477 -153789185 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 265 225 0 36 chr4 30499731 30499866 -153788796 + AluJ/monomer SINE Alu 244 297 -5 2020 108 0 0 chr4 30499895 30500181 -153788481 + AluSx SINE Alu 19 304 -8 1902 131 28 0 chr4 30500365 30500655 -153788007 - AluSq SINE Alu -15 298 1 686 272 34 15 chr4 30500665 30500871 -153787791 - MIR SINE MIR -45 217 8 1965 128 7 0 chr4 30501444 30501763 -153786899 + AluSx SINE Alu 1 321 0 2109 104 3 0 chr4 30501763 30502050 -153786612 + AluSp SINE Alu 1 288 -25 189 0 0 0 chr4 30502056 30502077 -153786585 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1007 157 0 0 chr4 30502094 30502253 -153786409 - AluSg/x SINE Alu -15 295 137 494 279 109 12 chr4 30502377 30502542 -153786120 + MER5A DNA MER1_type 9 189 0 809 201 38 0 chr4 30502546 30502755 -153785907 + MER20B DNA MER1_type 567 783 0 1459 192 51 10 chr4 30502819 30502994 -153785668 - AluJo SINE Alu -8 304 111 315 0 0 0 chr4 30502994 30503029 -153785633 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 1459 192 51 10 chr4 30503029 30503145 -153785517 - AluJo SINE Alu -201 111 1 427 219 19 48 chr4 30503166 30503271 -153785391 + MIR3 SINE MIR 92 193 -15 551 282 75 55 chr4 30504171 30504426 -153784236 - MIR SINE MIR -1 261 2 2293 99 0 0 chr4 30504728 30505040 -153783622 + AluSx SINE Alu 1 312 0 207 0 0 0 chr4 30505200 30505223 -153783439 + (A)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr4 30505230 30505251 -153783411 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 30505809 30505830 -153782832 + AT_rich Low_complexity Low_complexity 1 21 0 1949 149 0 0 chr4 30505932 30506228 -153782434 + AluSx SINE Alu 2 297 -15 879 158 0 0 chr4 30506423 30506556 -153782106 - AluSq/x SINE Alu -179 133 1 4686 114 48 7 chr4 30507660 30508385 -153780277 - L1PA13 LINE L1 -1 6162 5408 955 219 26 17 chr4 30508535 30508768 -153779894 - MIR SINE MIR -18 244 10 1794 123 0 0 chr4 30508947 30509198 -153779464 - AluSq SINE Alu -62 251 1 254 251 34 86 chr4 30509322 30509655 -153779007 + L1M2 LINE L1 5265 5586 -656 2125 131 16 7 chr4 30509685 30509991 -153778671 - AluSx SINE Alu -3 309 1 224 333 45 38 chr4 30510137 30510269 -153778393 + L2 LINE L2 3140 3272 0 350 216 11 23 chr4 30510810 30510898 -153777764 + FLAM SINE Alu 47 133 0 780 200 7 0 chr4 30510935 30511085 -153777577 - MLT1B LTR MaLR -213 177 27 697 225 77 28 chr4 30511143 30511349 -153777313 - MLT1G3 LTR MaLR -107 435 180 368 224 0 0 chr4 30511357 30511424 -153777238 - MLT1G3 LTR MaLR -500 67 1 2059 88 78 0 chr4 30511536 30511820 -153776842 - AluSg SINE Alu -4 306 1 701 153 221 0 chr4 30512514 30512585 -153776077 + MER96 DNA MER1_type? 13 67 -108 1115 219 132 47 chr4 30512585 30512950 -153775712 - MSTD LTR MaLR 0 396 1 701 153 221 0 chr4 30512950 30513009 -153775653 + MER96 DNA MER1_type? 67 172 -3 1682 132 0 0 chr4 30513133 30513368 -153775294 - AluSx SINE Alu -15 297 63 464 225 58 0 chr4 30514425 30514545 -153774117 + MIR SINE MIR 37 163 -99 2132 122 3 0 chr4 30514846 30515164 -153773498 + AluSq SINE Alu 1 319 0 251 277 36 0 chr4 30515165 30515248 -153773414 - MIR SINE MIR -48 214 129 2017 121 18 0 chr4 30515368 30515648 -153773014 + AluSx SINE Alu 1 285 -27 654 105 11 0 chr4 30515677 30515772 -153772890 - L1MB5 LINE L1 -15 6159 6064 1000 185 12 0 chr4 30515773 30515946 -153772716 - AluJb SINE Alu -4 308 134 2437 92 0 0 chr4 30515946 30516250 -153772412 - AluSg SINE Alu -6 304 1 1042 190 5 24 chr4 30516250 30516461 -153772201 - L1MB5 LINE L1 -104 6070 5864 1084 139 6 0 chr4 30516468 30516634 -153772028 - AluSg/x SINE Alu -12 300 134 201 256 26 39 chr4 30516681 30516759 -153771903 - MIR SINE MIR -57 205 129 528 127 59 51 chr4 30516789 30516907 -153771755 - L1M LINE L1 -811 5373 5255 2613 164 34 69 chr4 30516967 30517247 -153771415 - L1MB5 LINE L1 -294 5880 5592 2225 108 0 40 chr4 30517247 30517571 -153771091 + AluSx SINE Alu 1 311 -1 2613 164 34 69 chr4 30517571 30518032 -153770630 - L1MB5 LINE L1 -582 5592 5179 2117 145 0 0 chr4 30518032 30518335 -153770327 - AluSx SINE Alu -9 303 1 1775 173 3 28 chr4 30518336 30518654 -153770008 - AluJo SINE Alu -1 311 2 457 238 0 0 chr4 30518656 30518757 -153769905 - AluJo/FLAM SINE Alu -181 131 31 2992 162 26 95 chr4 30518777 30519314 -153769348 + MER51C LTR ERV1 1 573 -67 2306 113 0 3 chr4 30519314 30519623 -153769039 - AluSg SINE Alu -2 308 1 2992 162 26 95 chr4 30519623 30519658 -153769004 + MER51C LTR ERV1 573 522 -118 2102 122 0 7 chr4 30519658 30519946 -153768716 + AluSx SINE Alu 2 287 -25 2992 162 26 95 chr4 30519946 30520059 -153768603 + MER51C LTR ERV1 521 640 0 563 178 9 0 chr4 30520093 30520200 -153768462 - L1MB5 LINE L1 -959 5187 5080 824 161 71 13 chr4 30520200 30520355 -153768307 + FRAM SINE Alu 1 163 -13 781 199 37 65 chr4 30520356 30520451 -153768211 - L1MB5 LINE L1 -1055 5091 4995 180 0 0 0 chr4 30520451 30520471 -153768191 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2244 79 0 18 chr4 30520478 30520758 -153767904 - AluSx SINE Alu -37 275 1 781 199 37 65 chr4 30520758 30520870 -153767792 - L1MB5 LINE L1 -1157 4989 4882 22 0 0 0 chr4 30521108 30521130 -153767532 + AT_rich Low_complexity Low_complexity 1 22 0 1919 145 35 0 chr4 30521284 30521574 -153767088 - AluSx SINE Alu -10 302 3 195 276 40 0 chr4 30521576 30521652 -153767010 + MIR SINE MIR 161 239 -23 251 27 0 27 chr4 30521670 30521707 -153766955 + (ATG)n Simple_repeat Simple_repeat 2 37 0 2185 114 3 3 chr4 30521807 30522114 -153766548 - AluSx SINE Alu -5 307 1 250 323 38 19 chr4 30522546 30522704 -153765958 + L1ME LINE L1 4795 4955 -1191 1994 131 3 3 chr4 30522705 30523101 -153765561 - AluSx SINE Alu 0 396 1 665 168 0 0 chr4 30523440 30523547 -153765115 + FLAM_C SINE Alu 2 108 -35 25 0 0 0 chr4 30523555 30523580 -153765082 + AT_rich Low_complexity Low_complexity 1 25 0 1593 219 74 39 chr4 30523580 30524096 -153764566 + L1MC4a LINE L1 5409 5942 -1866 893 278 127 9 chr4 30524262 30524870 -153763792 + L1ME LINE L1 5128 5814 -348 2048 159 0 0 chr4 30525074 30525383 -153763279 + AluSx SINE Alu 1 309 -3 329 58 19 0 chr4 30525383 30525435 -153763227 + L1MA3 LINE L1 6253 6305 0 2256 102 0 0 chr4 30525614 30525907 -153762755 + AluSx SINE Alu 2 294 -18 529 228 117 33 chr4 30525956 30526136 -153762526 + MIR SINE MIR 45 239 -23 2141 110 3 0 chr4 30527124 30527406 -153761256 + AluSp SINE Alu 1 283 -30 225 0 0 0 chr4 30527410 30527435 -153761227 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 276 261 34 11 chr4 30530012 30530100 -153758562 + MLT1I LTR MaLR 57 146 -263 831 262 118 42 chr4 30530162 30530662 -153758000 - MER34 LTR ERV1 -4 538 1 4035 159 30 13 chr4 30530726 30530854 -153757808 - LTR62 LTR ERVK -2 717 593 917 137 0 0 chr4 30530854 30530985 -153757677 - FLAM_C SINE Alu -1 132 2 4035 159 30 13 chr4 30530985 30531561 -153757101 - LTR62 LTR ERVK -126 593 1 2014 140 0 31 chr4 30532366 30532688 -153755974 + AluJb SINE Alu 1 312 0 2375 85 13 0 chr4 30532689 30533041 -153755621 + AluY SINE Alu 1 356 0 3709 137 9 67 chr4 30533367 30533547 -153755115 - MER41B LTR ERV1 0 635 446 2145 115 7 0 chr4 30533547 30533842 -153754820 - AluSx SINE Alu -15 297 1 3709 137 9 67 chr4 30533842 30534333 -153754329 - MER41B LTR ERV1 -189 446 3 21 0 0 0 chr4 30534455 30534476 -153754186 + AT_rich Low_complexity Low_complexity 1 21 0 2458 87 0 10 chr4 30534476 30534786 -153753876 + AluSg SINE Alu 1 307 -3 1211 158 30 107 chr4 30535034 30535273 -153753389 - MLT1B LTR MaLR -2 388 181 2319 88 0 13 chr4 30535273 30535580 -153753082 - AluSc SINE Alu -6 303 1 1211 158 30 107 chr4 30535580 30535676 -153752986 - MLT1B LTR MaLR -209 181 79 238 280 53 15 chr4 30536674 30536806 -153751856 + L2 LINE L2 2885 3021 -251 1193 122 269 12 chr4 30536873 30537118 -153751544 + AluSg1 SINE Alu 1 308 -1 1733 221 89 63 chr4 30537118 30537660 -153751002 + MER49 LTR ERV1 19 756 -167 2225 119 0 0 chr4 30537660 30537963 -153750699 + AluSx SINE Alu 1 303 -9 1733 221 89 63 chr4 30537963 30538136 -153750526 + MER49 LTR ERV1 756 923 0 303 93 0 0 chr4 30538139 30538182 -153750480 + (TTC)n Simple_repeat Simple_repeat 3 45 0 1764 78 149 30 chr4 30538184 30538452 -153750210 - AluSq SINE Alu -13 300 1 2220 107 0 7 chr4 30538975 30539274 -153749388 + AluSx SINE Alu 1 297 -15 1524 234 47 38 chr4 30539567 30540019 -153748643 - L1ME2 LINE L1 -9 6155 5700 1870 154 0 4 chr4 30540019 30540299 -153748363 + AluSx SINE Alu 1 279 -33 198 191 0 0 chr4 30540299 30540341 -153748321 + GA-rich Low_complexity Low_complexity 1 42 0 387 208 104 0 chr4 30540348 30540444 -153748218 - L1ME2 LINE L1 -459 5707 5602 594 204 49 21 chr4 30540444 30540586 -153748076 + MER53 DNA DNA 4 149 -40 1232 185 56 79 chr4 30540612 30540968 -153747694 - L1ME2 LINE L1 -553 5613 5266 1940 125 0 28 chr4 30540986 30541273 -153747389 - AluSx SINE Alu -32 280 2 4160 223 108 88 chr4 30541273 30541752 -153746910 - L1ME2 LINE L1 -1427 4719 4251 2112 89 31 14 chr4 30541752 30542043 -153746619 - AluSg SINE Alu -14 296 1 4160 223 108 88 chr4 30542043 30542239 -153746423 - L1ME2 LINE L1 -1895 4251 4060 2185 98 19 26 chr4 30542239 30542419 -153746243 - AluSx SINE Alu -7 305 126 181 0 69 0 chr4 30542419 30542448 -153746214 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 2185 98 19 26 chr4 30542448 30542574 -153746088 - AluSx SINE Alu -186 126 1 4160 223 108 88 chr4 30542574 30542795 -153745867 - L1ME2 LINE L1 -2086 4060 3845 2065 136 7 0 chr4 30542795 30543097 -153745565 - AluSx SINE Alu -8 304 1 4160 223 108 88 chr4 30543097 30543434 -153745228 - L1ME2 LINE L1 -2301 3845 3516 781 199 0 0 chr4 30543434 30543565 -153745097 - FLAM_C SINE Alu -4 139 9 4160 223 108 88 chr4 30543565 30544052 -153744610 - L1ME2 LINE L1 -2630 3516 3040 2553 66 0 0 chr4 30544052 30544357 -153744305 - AluY SINE Alu -6 305 1 4160 223 108 88 chr4 30544357 30544442 -153744220 - L1ME2 LINE L1 -3106 3040 2958 237 33 0 0 chr4 30544442 30544472 -153744190 + (TG)n Simple_repeat Simple_repeat 1 30 0 2205 96 0 0 chr4 30544472 30544752 -153743910 - AluSq SINE Alu -33 280 1 4160 223 108 88 chr4 30544752 30545173 -153743489 - L1ME2 LINE L1 -3187 2959 2310 2351 107 7 0 chr4 30545203 30545511 -153743151 - AluSg SINE Alu 0 310 1 1387 213 14 60 chr4 30545513 30545865 -153742797 - MLT1A2 LTR MaLR -38 336 1 1501 144 45 0 chr4 30545871 30546114 -153742548 + MER2 DNA MER2_type 1 254 -91 1978 158 3 0 chr4 30546119 30546417 -153742245 - AluSx SINE Alu -13 299 1 1889 134 7 0 chr4 30546584 30546887 -153741775 + AluSx SINE Alu 14 312 0 2145 126 0 7 chr4 30547558 30547859 -153740803 - AluSx SINE Alu -13 299 1 1495 175 175 20 chr4 30547963 30548274 -153740388 + MER93a LTR ERV1 1 373 -29 3247 140 8 14 chr4 30548274 30548696 -153739966 - MER75 DNA T2_type -2 512 92 2220 119 0 3 chr4 30548696 30548999 -153739663 + AluSg1 SINE Alu 3 304 -5 3247 140 8 14 chr4 30548999 30549091 -153739571 - MER75 DNA T2_type -422 92 1 1495 175 175 20 chr4 30549091 30549127 -153739535 + MER93a LTR ERV1 373 402 0 2312 121 54 56 chr4 30549375 30549474 -153739188 + MSTC LTR MaLR 1 99 -329 1751 157 4 4 chr4 30549474 30549763 -153738899 + AluSg SINE Alu 14 302 0 2312 121 54 56 chr4 30549763 30550091 -153738571 + MSTC LTR MaLR 99 428 0 2204 109 0 0 chr4 30550241 30550553 -153738109 + AluSx SINE Alu 1 312 0 615 139 15 17 chr4 30550608 30550754 -153737908 - Charlie5 DNA MER1_type -180 2432 2330 289 203 17 0 chr4 30550787 30550846 -153737816 + MLT1H1 LTR MaLR 6 65 -490 1563 163 54 7 chr4 30550854 30551130 -153737532 - AluSx SINE Alu -21 291 3 884 227 0 32 chr4 30551146 30551331 -153737331 + AluJb SINE Alu 123 301 -11 581 200 9 0 chr4 30551344 30551459 -153737203 + Charlie5 DNA MER1_type 1 116 -2496 1875 143 35 7 chr4 30551461 30551747 -153736915 - AluSx SINE Alu -18 294 1 1465 143 15 61 chr4 30551797 30552056 -153736606 + Charlie5 DNA MER1_type 2290 2560 -64 1894 129 54 0 chr4 30552056 30552334 -153736328 - AluSx SINE Alu -19 293 1 5302 140 137 42 chr4 30552335 30553464 -153735198 - MER11B LTR ERVK 0 1236 1 1465 143 15 61 chr4 30553464 30553544 -153735118 + Charlie5 DNA MER1_type 2559 2615 -9 2364 97 6 3 chr4 30553641 30553952 -153734710 + AluSq SINE Alu 2 313 0 625 129 10 10 chr4 30553985 30554086 -153734576 + Tigger2a DNA MER2_type 1 101 -333 1326 191 5 5 chr4 30554088 30554308 -153734354 + AluJo SINE Alu 1 220 -92 309 163 0 0 chr4 30554308 30554357 -153734305 + AluJo SINE Alu 86 134 -168 461 280 29 63 chr4 30554473 30554712 -153733950 - MIR SINE MIR 0 262 32 2020 112 4 0 chr4 30554768 30555037 -153733625 + AluSq SINE Alu 1 270 -43 1677 120 0 8 chr4 30555046 30555280 -153733382 + AluJb SINE Alu 1 232 -80 1309 105 0 0 chr4 30555280 30555451 -153733211 + AluSq SINE Alu 131 301 -12 762 136 16 0 chr4 30555451 30555576 -153733086 + L1MC1 LINE L1 6064 6190 -143 1812 155 10 13 chr4 30556078 30556382 -153732280 + AluJo SINE Alu 1 303 -9 2313 91 7 3 chr4 30556398 30556696 -153731966 + AluSx SINE Alu 1 299 -13 202 338 98 8 chr4 30556759 30556892 -153731770 - L2 LINE L2 0 3313 3169 386 281 41 0 chr4 30556963 30557084 -153731578 + MIR SINE MIR 67 192 -70 370 132 0 85 chr4 30557596 30557701 -153730961 + AluS SINE Alu 3 74 -229 2256 118 0 10 chr4 30558199 30558505 -153730157 - AluSx SINE Alu -9 303 1 492 265 26 58 chr4 30558673 30558781 -153729881 + MIR SINE MIR 78 179 -83 3559 118 8 4 chr4 30558781 30559290 -153729372 - MER9 LTR ERVK 0 511 1 492 265 26 58 chr4 30559290 30559370 -153729292 + MIR SINE MIR 179 260 -2 21 0 0 0 chr4 30559417 30559438 -153729224 + AT_rich Low_complexity Low_complexity 1 21 0 1548 183 14 28 chr4 30559440 30559750 -153728912 + AluJo SINE Alu 2 307 0 697 197 8 15 chr4 30559787 30559919 -153728743 + AluJb SINE Alu 7 137 -175 851 247 50 44 chr4 30559919 30560294 -153728368 - MLT1G3 LTR MaLR -47 548 83 2647 68 31 6 chr4 30560294 30560647 -153728015 + MER4E LTR ERV1 1 362 -404 300 25 0 50 chr4 30560674 30560714 -153727948 - MER4E LTR ERV1 -380 386 349 2060 91 0 0 chr4 30560716 30560968 -153727694 + AluSg SINE Alu 2 253 -57 1427 98 0 0 chr4 30560969 30561143 -153727519 - AluSc SINE Alu -133 176 3 3403 55 2 5 chr4 30561144 30561566 -153727096 + MER4E LTR ERV1 346 766 0 2065 134 3 13 chr4 30561567 30561872 -153726790 - AluSx SINE Alu -6 306 5 393 281 36 7 chr4 30561872 30562004 -153726658 - MLT1F1 LTR MaLR -425 142 4 530 240 39 144 chr4 30562007 30562292 -153726370 - MLT1F1-int LTR MaLR 0 1371 1135 2211 109 0 3 chr4 30562292 30562586 -153726076 - AluSg SINE Alu -17 293 1 530 240 39 144 chr4 30562586 30562683 -153725979 - MLT1F1-int LTR MaLR -236 1135 1029 2080 120 33 0 chr4 30562791 30563092 -153725570 - AluSx SINE Alu -1 311 1 725 251 0 0 chr4 30563131 30563294 -153725368 + FRAM SINE Alu 8 170 -6 2010 150 3 3 chr4 30563353 30563659 -153725003 - AluSx SINE Alu -6 306 1 594 158 0 0 chr4 30563673 30563768 -153724894 + FLAM_C SINE Alu 47 141 -2 356 220 68 49 chr4 30563788 30563928 -153724734 - MLT1B LTR MaLR -211 179 51 2343 78 10 0 chr4 30564228 30564521 -153724141 + AluSc SINE Alu 1 296 -13 21 36 0 0 chr4 30564700 30564728 -153723934 + AT_rich Low_complexity Low_complexity 1 28 0 504 253 38 38 chr4 30564851 30565037 -153723625 - MIR SINE MIR -32 230 45 23 0 0 0 chr4 30565063 30565086 -153723576 + AT_rich Low_complexity Low_complexity 1 23 0 1878 148 36 0 chr4 30565095 30565373 -153723289 + AluJb SINE Alu 1 288 -24 435 273 0 0 chr4 30565534 30565633 -153723029 + L1MD3 LINE L1 7085 7183 -812 * 2227 184 19 9 chr4 30565629 30566059 -153722603 + L1MD3 LINE L1 7553 7986 -9 2105 124 3 0 chr4 30566533 30566823 -153721839 - AluJb SINE Alu -21 291 1 2068 122 16 13 chr4 30567162 30567466 -153721196 - AluJb SINE Alu -5 307 3 2117 133 0 3 chr4 30567686 30567986 -153720676 + AluSx SINE Alu 1 299 -13 1384 242 109 40 chr4 30567993 30568456 -153720206 - LTR33A LTR ERVL 0 523 45 1990 120 37 7 chr4 30568539 30568839 -153719823 + AluSx SINE Alu 1 309 -3 23 33 0 0 chr4 30569487 30569517 -153719145 + AT_rich Low_complexity Low_complexity 1 30 0 871 266 104 74 chr4 30569800 30570562 -153718100 + L1ME4a LINE L1 5314 6081 -40 1843 141 7 14 chr4 30571373 30571670 -153716992 + AluSx SINE Alu 1 295 -17 2475 103 0 0 chr4 30571987 30572298 -153716364 + AluSx SINE Alu 1 311 -1 454 327 46 0 chr4 30573867 30574084 -153714578 + L1ME3 LINE L1 5493 5719 -451 360 163 57 8 chr4 30574089 30574212 -153714450 + GA-rich Low_complexity Low_complexity 3 131 0 329 263 92 106 chr4 30574214 30574319 -153714343 + L1ME3 LINE L1 5738 5843 -319 2318 111 3 0 chr4 30574319 30574625 -153714037 - AluSx SINE Alu -4 308 2 329 263 92 106 chr4 30574625 30574736 -153713926 + L1ME3 LINE L1 5843 5951 -211 306 50 0 0 chr4 30575940 30575980 -153712682 + (CCAA)n Simple_repeat Simple_repeat 4 43 0 1968 104 59 0 chr4 30576110 30576380 -153712282 + AluSx SINE Alu 3 288 -24 1820 252 21 79 chr4 30578282 30579235 -153709427 + L1MEc LINE L1 2048 2921 -3294 2261 219 77 58 chr4 30579369 30579401 -153709261 + HAL1 LINE L1 1597 1627 -880 946 218 69 5 chr4 30579401 30579603 -153709059 - MER58C DNA MER1_type 0 215 1 2261 219 77 58 chr4 30579603 30580386 -153708276 + HAL1 LINE L1 1627 2428 -79 31 26 0 0 chr4 30580427 30580465 -153708197 + AT_rich Low_complexity Low_complexity 1 38 0 254 224 35 0 chr4 30580465 30580523 -153708139 + HAL1 LINE L1 2447 2506 -1 694 285 5 5 chr4 30581339 30581546 -153707116 + MIR SINE MIR 18 224 -38 1223 260 121 19 chr4 30581580 30582234 -153706428 + L2 LINE L2 2371 3092 -221 268 144 53 8 chr4 30582236 30582368 -153706294 + (TA)n Simple_repeat Simple_repeat 1 138 0 1902 137 0 62 chr4 30582368 30582674 -153705988 - AluSx SINE Alu -25 287 1 570 279 66 20 chr4 30582675 30582872 -153705790 + L2 LINE L2 3101 3306 -7 1467 134 0 0 chr4 30582885 30583086 -153705576 + AluSx SINE Alu 1 201 -111 406 275 45 45 chr4 30583160 30583338 -153705324 + MIR SINE MIR 71 248 -14 272 351 11 0 chr4 30585091 30585185 -153703477 + (TG)n Simple_repeat Simple_repeat 1 95 0 251 315 45 0 chr4 30586866 30586955 -153701707 - MIR SINE MIR -156 106 14 239 293 49 41 chr4 30587301 30587424 -153701238 - MIR3 SINE MIR -7 201 78 221 271 0 0 chr4 30587576 30587624 -153701038 + L2 LINE L2 3266 3313 0 199 266 70 47 chr4 30588151 30588279 -153700383 + L2 LINE L2 3137 3267 -5 657 215 20 62 chr4 30588624 30588819 -153699843 + MIR SINE MIR 22 208 -54 2307 96 3 0 chr4 30588856 30589149 -153699513 - AluSx SINE Alu -18 294 1 468 0 0 0 chr4 30590098 30590150 -153698512 + (TG)n Simple_repeat Simple_repeat 2 53 0 236 270 0 16 chr4 30590679 30590742 -153697920 + CT-rich Low_complexity Low_complexity 1 62 0 1842 149 20 17 chr4 30590832 30591133 -153697529 + AluJo SINE Alu 1 302 -10 662 283 157 25 chr4 30591666 30591952 -153696710 + MLT1I LTR MaLR 84 407 -2 1109 113 0 4 chr4 30592107 30592367 -153696295 + (GGAA)n Simple_repeat Simple_repeat 1 258 0 1069 306 51 42 chr4 30592452 30593004 -153695658 + MARNA DNA Mariner 10 566 -20 1801 126 8 0 chr4 30593192 30593455 -153695207 + AluSx SINE Alu 33 297 -15 239 247 65 0 chr4 30593744 30593821 -153694841 - MIR SINE MIR -72 190 109 291 329 71 0 chr4 30594231 30594371 -153694291 - MIR SINE MIR -95 167 18 226 151 57 0 chr4 30594373 30594426 -153694236 + T-rich Low_complexity Low_complexity 4 59 0 640 305 44 0 chr4 30594533 30594736 -153693926 - MIR SINE MIR -31 231 20 1663 109 0 13 chr4 30594820 30595049 -153693613 - AluJb SINE Alu -22 290 65 276 357 49 0 chr4 30595134 30595277 -153693385 + MIR SINE MIR 18 167 -95 334 213 27 13 chr4 30595319 30595394 -153693268 + MIR SINE MIR 36 111 -151 6412 72 17 43 chr4 30595429 30596738 -153691924 + L1PA10 LINE L1 4868 6154 -14 213 200 0 0 chr4 30596771 30596816 -153691846 + L2 LINE L2 3210 3254 -18 355 265 88 29 chr4 30597042 30597212 -153691450 - MIR SINE MIR -54 208 29 825 137 0 15 chr4 30597844 30597975 -153690687 + FLAM_C SINE Alu 5 133 0 24 0 0 0 chr4 30597993 30598017 -153690645 + AT_rich Low_complexity Low_complexity 1 24 0 1620 110 57 4 chr4 30598052 30598280 -153690382 + AluSq SINE Alu 15 254 -59 211 0 57 29 chr4 30598298 30598333 -153690329 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 180 191 0 44 chr4 30598482 30598550 -153690112 + GA-rich Low_complexity Low_complexity 3 67 0 350 247 27 0 chr4 30598573 30598719 -153689943 + GA-rich Low_complexity Low_complexity 1 150 0 335 262 113 51 chr4 30599263 30599599 -153689063 - L2 LINE L2 -10 3262 2906 277 271 31 0 chr4 30599913 30600009 -153688653 + MER5B DNA MER1_type 61 159 -19 2395 104 0 3 chr4 30600072 30600381 -153688281 + AluSx SINE Alu 1 308 -4 992 192 61 0 chr4 30600404 30600602 -153688060 - MLT1B LTR MaLR -8 382 173 9947 43 3 4 chr4 30600808 30602029 -153686633 + L1P LINE L1 3350 4569 -1577 2011 120 18 4 chr4 30602370 30602692 -153685970 - AluSc SINE Alu 0 326 1 2512 167 25 4 chr4 30603383 30603868 -153684794 - L1P LINE L1 -1596 4550 4056 2232 110 53 11 chr4 30603868 30604209 -153684453 + L1PA13 LINE L1 5790 6159 -4 1566 172 8 0 chr4 30604255 30604517 -153684145 - AluSx SINE Alu -14 298 35 2311 92 0 13 chr4 30604801 30605134 -153683528 - AluSc SINE Alu 0 309 1 649 244 91 14 chr4 30606263 30606472 -153682190 + MIR SINE MIR 14 238 -24 21 0 0 0 chr4 30607499 30607520 -153681142 + AT_rich Low_complexity Low_complexity 1 21 0 27 81 0 0 chr4 30608830 30608892 -153679770 + GC_rich Low_complexity Low_complexity 1 62 0 1706 147 7 11 chr4 30609139 30609424 -153679238 - AluSx SINE Alu -28 284 1 802 162 0 22 chr4 30609427 30609563 -153679099 - AluJo/FLAM SINE Alu -169 133 1 256 286 0 0 chr4 30609597 30609653 -153679009 + polypyrimidine Low_complexity Low_complexity 2 57 0 183 129 0 0 chr4 30611716 30611747 -153676915 + (T)n Simple_repeat Simple_repeat 1 31 0 1970 130 27 0 chr4 30612418 30612711 -153675951 + AluSq SINE Alu 1 301 -12 2200 103 3 0 chr4 30612716 30613016 -153675646 + AluSx SINE Alu 6 306 -6 3490 168 19 26 chr4 30613016 30613708 -153674954 + L1MB2 LINE L1 5483 6169 -2 191 244 0 0 chr4 30614275 30614316 -153674346 + L2 LINE L2 3226 3266 -6 508 240 45 26 chr4 30615049 30615203 -153673459 + MIR SINE MIR 29 185 -77 198 71 0 0 chr4 30616130 30616158 -153672504 + (T)n Simple_repeat Simple_repeat 1 28 0 2150 100 0 17 chr4 30616977 30617278 -153671384 - AluSx SINE Alu -16 296 1 251 372 0 0 chr4 30617285 30617363 -153671299 - L2 LINE L2 -1 3312 3235 2044 103 3 3 chr4 30618174 30618465 -153670197 + AluSx SINE Alu 1 291 -21 530 191 9 27 chr4 30618490 30618600 -153670062 + MER58A DNA MER1_type 10 117 0 254 185 0 108 chr4 30618609 30618674 -153669988 + MER58A DNA MER1_type 165 222 -2 1292 166 39 75 chr4 30618685 30618780 -153669882 - MER33 DNA MER1_type -2262 323 226 2352 88 0 0 chr4 30618780 30619087 -153669575 + AluSx SINE Alu 1 307 -5 1292 166 39 75 chr4 30619087 30619322 -153669340 - MER33 DNA MER1_type -2359 226 5 809 234 0 18 chr4 30619485 30619656 -153669006 - FRAM SINE Alu -8 168 1 353 306 81 6 chr4 30620457 30620617 -153668045 + MIR3 SINE MIR 31 202 -6 2287 81 3 0 chr4 30620843 30621141 -153667521 - AluSc SINE Alu -10 299 1 712 155 23 52 chr4 30621409 30621583 -153667079 + L1MB8 LINE L1 6001 6169 -9 2354 93 0 0 chr4 30621599 30621909 -153666753 + AluSx SINE Alu 1 310 -2 1440 284 55 6 chr4 30621963 30622453 -153666209 - L1MC4a LINE L1 -1953 5855 5342 445 337 26 5 chr4 30622635 30622825 -153665837 + L2 LINE L2 2877 3070 -202 2936 168 25 7 chr4 30623033 30623587 -153665075 - L1MB3 LINE L1 0 6183 5620 1765 118 8 0 chr4 30623601 30623855 -153664807 - AluSx SINE Alu -21 291 36 894 200 6 6 chr4 30623957 30624117 -153664545 - MLT1B LTR MaLR -226 164 5 2088 111 0 0 chr4 30625690 30625979 -153662683 + AluSx SINE Alu 2 290 -22 1905 110 0 0 chr4 30627159 30627423 -153661239 - AluY SINE Alu -21 290 27 21 0 0 0 chr4 30627432 30627453 -153661209 + AT_rich Low_complexity Low_complexity 1 21 0 613 239 0 0 chr4 30627706 30627844 -153660818 - MIR3 SINE MIR -15 193 56 2071 201 45 69 chr4 30628073 30628606 -153660056 + MLT2B1 LTR ERVL 1 520 0 722 272 30 25 chr4 30629806 30630008 -153658654 - MIR SINE MIR 0 262 60 260 254 68 0 chr4 30630287 30630346 -153658316 - L2 LINE L2 -1 3271 3209 2398 55 3 0 chr4 30630596 30630904 -153657758 - AluY SINE Alu -1 310 2 353 257 29 14 chr4 30631714 30631854 -153656808 - L1MC/D LINE L1 -1984 5824 5683 23 0 0 0 chr4 30632549 30632572 -153656090 + AT_rich Low_complexity Low_complexity 1 23 0 1015 59 0 15 chr4 30633356 30633492 -153655170 + AluY SINE Alu 1 134 -177 2058 75 0 14 chr4 30633492 30633774 -153654888 + AluY SINE Alu 1 278 -33 2184 161 79 25 chr4 30634146 30634587 -153654075 + MLT1C LTR MaLR 1 465 -2 212 270 110 68 chr4 30634624 30634787 -153653875 + L2 LINE L2 2822 2991 -322 3645 172 62 47 chr4 30635119 30635970 -153652692 + L1MB2 LINE L1 5260 6121 -50 2193 93 0 3 chr4 30635970 30636261 -153652401 + AluSq SINE Alu 7 296 -17 3645 172 62 47 chr4 30636261 30636306 -153652356 + L1MB2 LINE L1 6121 6164 -7 740 163 64 7 chr4 30636671 30636812 -153651850 + MLT1C LTR MaLR 1 149 -318 319 296 23 0 chr4 30637321 30637409 -153651253 + CT-rich Low_complexity Low_complexity 6 95 0 1019 179 29 57 chr4 30637448 30637759 -153650903 + MLT1A1 LTR MaLR 6 365 0 698 252 47 95 chr4 30637831 30638193 -153650469 - L1MC5 LINE L1 -30 7931 7610 1969 125 17 0 chr4 30638193 30638490 -153650172 + AluSx SINE Alu 1 302 -10 698 252 47 95 chr4 30638490 30638761 -153649901 - L1MC5 LINE L1 -351 7610 7328 325 326 68 0 chr4 30638768 30638915 -153649747 - L1MC4 LINE L1 -565 7477 7321 * 438 271 53 0 chr4 30638909 30639042 -153649620 - L1MC4a LINE L1 -632 7176 7037 537 323 67 30 chr4 30639054 30639354 -153649308 + MARNA DNA Mariner 268 578 -8 317 170 0 0 chr4 30639354 30639401 -153649261 - L1MC4 LINE L1 -1338 6704 6658 203 245 0 0 chr4 30639948 30640001 -153648661 - MIR3 SINE MIR -5 203 151 486 245 138 19 chr4 30640018 30640177 -153648485 - MIR3 SINE MIR -25 183 6 438 294 20 33 chr4 30640541 30640694 -153647968 + MIR3 SINE MIR 19 169 -39 432 245 122 27 chr4 30641187 30641454 -153647208 - LTR16C LTR ERVL -3 488 145 696 275 96 95 chr4 30641635 30642291 -153646371 - L2 LINE L2 0 3313 2657 1442 235 138 11 chr4 30642292 30642738 -153645924 - MLT1E3 LTR MaLR 0 608 122 482 277 69 35 chr4 30642818 30643078 -153645584 - L2 LINE L2 -646 2668 2400 411 323 32 8 chr4 30643228 30643352 -153645310 - MIR SINE MIR -116 146 20 2127 97 0 0 chr4 30643369 30643657 -153645005 - AluSx SINE Alu 0 312 25 1564 146 76 7 chr4 30643951 30644226 -153644436 - AluJo SINE Alu -18 294 1 2111 121 88 36 chr4 30644406 30644769 -153643893 - MLT1B LTR MaLR -8 382 1 1474 74 26 0 chr4 30645316 30645506 -153643156 - AluSx SINE Alu -117 195 1 604 256 150 24 chr4 30645664 30646128 -153642534 + MLT1H1 LTR MaLR 1 555 0 732 257 104 27 chr4 30646581 30646949 -153641713 + L2 LINE L2 2731 3146 -167 1587 150 18 18 chr4 30646957 30647237 -153641425 + AluJo SINE Alu 1 280 -32 249 109 0 0 chr4 30647237 30647283 -153641379 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 1214 149 5 0 chr4 30647283 30647478 -153641184 + AluYa5 SINE Alu 108 303 -8 306 250 207 43 chr4 30647497 30647613 -153641049 + L2 LINE L2 3179 3313 0 2510 99 48 14 chr4 30648179 30648531 -153640131 - THE1B LTR MaLR 0 364 1 319 329 35 7 chr4 30649475 30649618 -153639044 - LTR67 LTR ERVL 0 557 411 552 226 149 6 chr4 30649822 30649990 -153638672 + MIR SINE MIR 1 192 -70 415 259 37 37 chr4 30650184 30650319 -153638343 + L2 LINE L2 3179 3313 0 261 270 0 27 chr4 30650331 30650405 -153638257 + L2 LINE L2 3238 3309 -4 202 212 91 15 chr4 30650890 30650956 -153637706 + MIR SINE MIR 80 150 -112 697 250 114 116 chr4 30651027 30651604 -153637058 - MLT1K LTR MaLR -11 577 2 2204 92 0 7 chr4 30651616 30651919 -153636743 - AluSg SINE Alu 0 310 10 236 373 59 26 chr4 30652132 30652285 -153636377 + L2 LINE L2 3115 3272 0 252 220 0 0 chr4 30652734 30652784 -153635878 + GA-rich Low_complexity Low_complexity 4 53 0 257 339 9 18 chr4 30653281 30653393 -153635269 + C-rich Low_complexity Low_complexity 3 113 0 393 221 80 18 chr4 30653706 30653819 -153634843 + MIR SINE MIR 20 139 -123 557 270 98 28 chr4 30653932 30654147 -153634515 - MIR SINE MIR -4 258 29 1055 145 17 90 chr4 30654972 30655206 -153633456 + MER20 DNA MER1_type 3 219 0 2023 102 41 3 chr4 30655418 30655711 -153632951 - AluSq SINE Alu -9 304 1 1691 142 8 0 chr4 30655764 30656032 -153632630 - AluSx SINE Alu -19 293 24 779 301 1 23 chr4 30656135 30656357 -153632305 - MIR SINE MIR -10 252 35 330 273 40 53 chr4 30656428 30656578 -153632084 + MIR SINE MIR 73 220 -42 186 286 0 0 chr4 30656953 30657009 -153631653 + L2 LINE L2 2641 2696 -618 271 301 35 55 chr4 30657009 30657133 -153631529 - L1MDa LINE L1 -3302 3238 3118 2560 42 0 0 chr4 30657133 30657441 -153631221 - AluY SINE Alu -3 308 1 271 301 35 55 chr4 30657441 30657515 -153631147 - L1MDa LINE L1 -3422 3118 3044 569 294 98 51 chr4 30657545 30657710 -153630952 - L1MDa LINE L1 -3640 2900 2744 2017 96 0 33 chr4 30657710 30658013 -153630649 - AluSq SINE Alu -20 293 1 569 294 98 51 chr4 30658013 30658089 -153630573 - L1MDa LINE L1 -3796 2744 2673 2977 6 0 0 chr4 30658089 30658403 -153630259 - AluYb8 SINE Alu -4 314 1 569 294 98 51 chr4 30658403 30658533 -153630129 - L1MDa LINE L1 -3867 2673 2551 1981 124 13 35 chr4 30658533 30658847 -153629815 - AluSx SINE Alu -5 307 1 569 294 98 51 chr4 30658847 30658967 -153629695 - L1MDa LINE L1 -3989 2551 2386 552 196 49 0 chr4 30659414 30659516 -153629146 + Tigger3(Golem) DNA MER2_type 2 108 -2921 * 4520 121 37 12 chr4 30659507 30660241 -153628421 + Tigger3(Golem) DNA MER2_type 2278 3029 0 501 318 107 58 chr4 30660251 30660455 -153628207 - L2 LINE L2 -583 2731 2538 809 130 8 23 chr4 30660455 30660586 -153628076 + FLAM_C SINE Alu 5 133 0 501 318 107 58 chr4 30660586 30661682 -153626980 - L2 LINE L2 -776 2538 1367 221 308 39 0 chr4 30662669 30662747 -153625915 - MIR SINE MIR -103 105 25 961 112 0 0 chr4 30663564 30663698 -153624964 + AluSg/x SINE Alu 176 309 -3 966 200 5 152 chr4 30663699 30664028 -153624634 - L1MC4 LINE L1 -19 8023 7754 1578 136 106 12 chr4 30664028 30664358 -153624304 + MER46B DNA MER2_type 1 236 0 966 200 5 152 chr4 30664358 30664403 -153624259 - L1MC4 LINE L1 -288 7754 7704 188 0 74 0 chr4 30664419 30664446 -153624216 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2253 101 3 0 chr4 30664448 30664735 -153623927 - AluSq SINE Alu -24 289 2 1848 115 7 7 chr4 30668199 30668468 -153620194 + AluSx SINE Alu 23 291 -21 2157 102 78 3 chr4 30669466 30669799 -153618863 - MER46B DNA MER2_type -3 233 1 271 152 15 30 chr4 30669802 30669868 -153618794 + CT-rich Low_complexity Low_complexity 3 67 0 746 292 12 19 chr4 30670294 30670551 -153618111 + MIR SINE MIR 8 262 0 631 276 174 39 chr4 30670605 30671037 -153617625 - LTR33 LTR ERVL -29 492 3 401 285 124 30 chr4 30671201 30671468 -153617194 + MLT1I LTR MaLR 118 409 0 205 212 158 103 chr4 30672528 30672581 -153616081 - MER5B DNA MER1_type -4 174 125 2073 137 0 3 chr4 30672581 30672888 -153615774 + AluSx SINE Alu 1 306 -6 205 212 158 103 chr4 30672888 30672999 -153615663 - MER5B DNA MER1_type -53 125 1 909 150 15 75 chr4 30673008 30673067 -153615595 + MER5A DNA MER1_type 2 63 -126 1642 191 45 17 chr4 30673067 30673422 -153615240 + MLT1A1 LTR MaLR 1 365 0 909 150 15 75 chr4 30673422 30673562 -153615100 + MER5A DNA MER1_type 63 189 0 377 249 93 80 chr4 30673623 30673848 -153614814 - MIR SINE MIR -7 255 28 1654 192 32 118 chr4 30674441 30675008 -153613654 - MLT2B1 LTR ERVL -2 518 1 1035 190 4 58 chr4 30675039 30675265 -153613397 - MER20 DNA MER1_type -5 214 1 317 263 109 115 chr4 30675584 30675915 -153612747 + MLT1K LTR MaLR 205 533 -55 4271 178 44 32 chr4 30675935 30676630 -153612032 + MER21B LTR ERV1 6 714 -149 183 80 0 0 chr4 30676630 30676655 -153612007 + (AATTG)n Simple_repeat Simple_repeat 2 26 0 4271 178 44 32 chr4 30676655 30676796 -153611866 + MER21B LTR ERV1 714 852 -11 558 218 69 63 chr4 30676872 30677000 -153611662 + MER96 DNA MER1_type? 1 133 -42 4212 13 0 0 chr4 30677000 30677487 -153611175 + L1PA3 LINE L1 5682 6168 0 558 218 69 63 chr4 30677487 30677531 -153611131 + MER96 DNA MER1_type? 133 175 0 441 0 0 0 chr4 30677859 30677908 -153610754 + (TG)n Simple_repeat Simple_repeat 2 50 0 281 314 66 54 chr4 30678037 30678279 -153610383 - L2 LINE L2 -95 3177 2933 677 214 144 0 chr4 30678801 30678974 -153609688 + MIR SINE MIR 18 215 -47 332 212 0 0 chr4 30679643 30679709 -153608953 + MER5A DNA MER1_type 9 74 -115 2201 116 0 16 chr4 30679710 30680028 -153608634 + AluSq SINE Alu 1 313 0 747 185 8 0 chr4 30680046 30680166 -153608496 + AluSq/x SINE Alu 2 125 -187 246 32 0 0 chr4 30680166 30680197 -153608465 + (CATA)n Simple_repeat Simple_repeat 2 32 0 180 339 0 0 chr4 30680219 30680281 -153608381 + MER5A DNA MER1_type 128 189 0 2144 113 0 36 chr4 30680529 30680668 -153607994 + AluSg SINE Alu 1 143 -167 2438 74 0 0 chr4 30680668 30680965 -153607697 + AluY SINE Alu 1 297 -14 2144 113 0 36 chr4 30680965 30681134 -153607528 + AluSg SINE Alu 143 298 -12 240 227 80 0 chr4 30681180 30681255 -153607407 + L1MC4 LINE L1 6612 6692 -1350 6550 128 66 26 chr4 30681329 30681917 -153606745 - Tigger3b DNA MER2_type -1802 1226 663 1801 156 28 10 chr4 30681917 30682205 -153606457 - AluJo SINE Alu -19 293 1 6550 128 66 26 chr4 30682205 30682569 -153606093 - Tigger3b DNA MER2_type -2365 663 216 1835 141 105 3 chr4 30682569 30682875 -153605787 - MER1B DNA MER1_type 0 337 1 6550 128 66 26 chr4 30682875 30683100 -153605562 - Tigger3b DNA MER2_type -2812 216 1 397 230 152 36 chr4 30683178 30683343 -153605319 - HAL1 LINE L1 -186 2321 2138 283 288 0 0 chr4 30683340 30683420 -153605242 - HAL1 LINE L1 -1154 1353 1274 * 2243 139 10 21 chr4 30683956 30684321 -153604341 + MLT1A1 LTR MaLR 2 355 -9 2333 104 0 0 chr4 30684671 30684969 -153603693 + AluSc SINE Alu 1 298 -11 1140 146 19 29 chr4 30685821 30686026 -153602636 + MER20 DNA MER1_type 15 217 -2 221 342 93 43 chr4 30686796 30687194 -153601468 + L2 LINE L2 2844 3261 -11 240 143 0 0 chr4 30687215 30687257 -153601405 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 1491 264 36 36 chr4 30688622 30689121 -153599541 + L1ME3A LINE L1 5504 6002 -168 229 270 0 0 chr4 30689146 30689220 -153599442 + L1ME3A LINE L1 6086 6159 -11 1159 205 21 4 chr4 30689764 30689998 -153598664 + MER115 DNA AcHobo 445 682 -11 351 369 96 29 chr4 30690060 30690477 -153598185 - L3 LINE CR1 -789 788 344 219 214 0 0 chr4 30690488 30690530 -153598132 + CT-rich Low_complexity Low_complexity 2 43 0 980 208 35 44 chr4 30690692 30690918 -153597744 - MER58A DNA MER1_type 0 224 1 1797 169 13 29 chr4 30692534 30692847 -153595815 + AluJo SINE Alu 1 308 -4 259 325 8 16 chr4 30694060 30694186 -153594476 + MIR SINE MIR 16 140 -122 2428 103 0 0 chr4 30694195 30694544 -153594118 + AluSx SINE Alu 1 349 0 1299 169 1 109 chr4 30694546 30694709 -153593953 - MER58 DNA MER1_type -3 2417 2238 1755 156 69 9 chr4 30694709 30695055 -153593607 + L1MA9 LINE L1 5946 6312 0 1299 169 1 109 chr4 30695055 30695098 -153593564 - MER58 DNA MER1_type -182 2238 2192 758 161 0 0 chr4 30695098 30695216 -153593446 - FLAM_C SINE Alu -15 118 1 1299 169 1 109 chr4 30695216 30695433 -153593229 - MER58 DNA MER1_type -228 2192 3 594 262 36 0 chr4 30696020 30696188 -153592474 + MIR SINE MIR 47 220 -42 697 225 106 14 chr4 30696219 30696261 -153592401 - MIR SINE MIR -11 251 214 1691 165 0 81 chr4 30696261 30696583 -153592079 - AluJo SINE Alu -16 296 1 697 225 106 14 chr4 30696583 30696758 -153591904 - MIR SINE MIR -48 214 14 871 216 188 50 chr4 30697904 30698266 -153590396 + LTR16A1 LTR ERVL 43 454 -3 1334 254 43 47 chr4 30700344 30700832 -153587830 + MLT1H LTR MaLR 57 542 -7 2006 117 7 3 chr4 30701238 30701557 -153587105 + AluSq SINE Alu 1 320 0 1485 174 58 16 chr4 30701557 30701878 -153586784 - MLT2D LTR ERVL -7 390 16 1652 146 52 4 chr4 30701878 30702146 -153586516 - AluJo SINE Alu -10 302 22 1856 195 39 47 chr4 30702196 30702663 -153585999 + MLT1C LTR MaLR 3 465 -2 191 250 36 18 chr4 30703059 30703115 -153585547 + MIR SINE MIR 26 82 -180 319 259 99 61 chr4 30703187 30703318 -153585344 - MIR SINE MIR -118 144 9 2223 120 10 0 chr4 30703424 30703724 -153584938 + AluSx SINE Alu 1 303 -9 2274 166 63 14 chr4 30704652 30705097 -153583565 - MLT1C LTR MaLR 0 467 1 315 286 92 34 chr4 30705120 30705239 -153583423 + L2 LINE L2 3145 3270 -2 340 322 115 0 chr4 30705298 30705472 -153583190 + MIR SINE MIR 57 250 -12 2285 114 0 0 chr4 30705476 30705774 -153582888 - AluSx SINE Alu -14 298 1 1865 153 58 22 chr4 30705795 30706155 -153582507 + THE1C LTR MaLR 1 373 -2 423 309 89 44 chr4 30706282 30706667 -153581995 - MLT1K LTR MaLR -2 586 151 331 223 246 0 chr4 30707661 30707791 -153580871 - MIR SINE MIR -69 193 32 219 244 56 11 chr4 30707839 30707929 -153580733 - MIR SINE MIR -73 189 96 577 309 116 16 chr4 30708895 30709166 -153579496 - L2 LINE L2 -1 3312 3069 1902 142 192 0 chr4 30709166 30709525 -153579137 - MSTC LTR MaLR 0 428 1 577 309 116 16 chr4 30709525 30709720 -153578942 - L2 LINE L2 -244 3069 2760 351 0 0 0 chr4 30709748 30709787 -153578875 + (TG)n Simple_repeat Simple_repeat 1 39 0 1341 179 0 91 chr4 30709787 30710094 -153578568 - AluJo SINE Alu -33 279 1 2001 150 32 12 chr4 30710312 30710653 -153578009 - MER7A DNA MER2_type 0 346 1 3382 134 12 39 chr4 30710677 30711246 -153577416 - MLT2B3 LTR ERVL 0 554 1 27 29 0 0 chr4 30711615 30711649 -153577013 + AT_rich Low_complexity Low_complexity 1 34 0 1111 220 20 16 chr4 30712341 30712586 -153576076 + MLT1A2 LTR MaLR 1 246 -128 232 132 26 0 chr4 30712586 30712624 -153576038 - Tigger3(Golem) DNA MER2_type -190 2839 2801 * 614 199 13 45 chr4 30712603 30712789 -153575873 + MLT1A2 LTR MaLR 189 372 -2 411 248 124 9 chr4 30712828 30712941 -153575721 + MIR SINE MIR 19 144 -118 2344 71 31 0 chr4 30713087 30713381 -153575281 + AluSg SINE Alu 1 303 -7 292 288 0 12 chr4 30713512 30713592 -153575070 + MLT1H1 LTR MaLR 1 79 -476 971 183 31 54 chr4 30715130 30715354 -153573308 + MER20 DNA MER1_type 1 219 0 500 136 58 7 chr4 30715428 30715582 -153573080 + (TA)n Simple_repeat Simple_repeat 1 162 0 739 217 90 0 chr4 30715584 30715750 -153572912 - MIR SINE MIR -58 204 24 305 274 10 10 chr4 30716184 30716286 -153572376 + L2 LINE L2 2952 3053 -219 233 323 20 0 chr4 30716693 30716792 -153571870 - L3 LINE CR1 -325 1252 1152 357 245 139 118 chr4 30716914 30717245 -153571417 - MER102b DNA MER1_type 0 341 4 444 271 20 45 chr4 30719883 30720082 -153568580 - MER112 DNA MER1_type -1 259 66 1386 112 208 19 chr4 30720120 30720380 -153568282 - AluSg1 SINE Alu 0 309 1 298 250 0 0 chr4 30720447 30720511 -153568151 + L2 LINE L2 3248 3311 -2 21 0 0 0 chr4 30720993 30721014 -153567648 + AT_rich Low_complexity Low_complexity 1 21 0 482 250 62 50 chr4 30721604 30721828 -153566834 + MIR SINE MIR 16 246 -16 427 269 157 27 chr4 30722155 30722378 -153566284 + L1MC4a LINE L1 5683 5934 -1874 2213 123 3 3 chr4 30722587 30722895 -153565767 + AluSx SINE Alu 2 309 -3 485 272 8 16 chr4 30723752 30723877 -153564785 + MIR SINE MIR 117 240 -22 518 125 0 0 chr4 30724001 30724073 -153564589 + AluJ/FLAM SINE Alu 2 73 -239 535 299 62 38 chr4 30724978 30725020 -153563642 + L2 LINE L2 3016 3056 -257 2578 66 3 0 chr4 30725020 30725325 -153563337 - AluSc SINE Alu -3 306 1 535 299 62 38 chr4 30725325 30725573 -153563089 + L2 LINE L2 3056 3313 0 1812 122 91 0 chr4 30726031 30726317 -153562345 - AluSx SINE Alu 0 312 1 568 152 0 9 chr4 30726422 30726534 -153562128 - MER96B DNA MER1_type? -233 184 74 1880 201 92 25 chr4 30726535 30726968 -153561694 + MLT1C LTR MaLR 6 467 0 276 129 226 0 chr4 30726972 30727034 -153561628 - MER96B DNA MER1_type? -341 76 1 25 31 0 0 chr4 30727646 30727678 -153560984 + AT_rich Low_complexity Low_complexity 1 32 0 238 229 0 0 chr4 30727680 30727728 -153560934 - MER5A DNA MER1_type -80 109 62 1820 150 17 10 chr4 30727728 30728028 -153560634 - AluSx SINE Alu 0 312 11 2023 140 3 0 chr4 30728333 30728626 -153560036 - AluSx SINE Alu -18 294 1 489 211 0 0 chr4 30728652 30728742 -153559920 - Tigger5 DNA MER2_type 0 2323 2234 236 273 0 18 chr4 30728749 30728804 -153559858 - Tigger5 DNA MER2_type -2268 55 2 198 0 0 0 chr4 30730895 30730917 -153557745 + (TAA)n Simple_repeat Simple_repeat 1 22 0 2086 91 29 0 chr4 30730928 30731204 -153557458 - AluSx SINE Alu -28 284 1 543 291 174 0 chr4 30734829 30735042 -153553620 - MIR SINE MIR 0 262 13 259 294 198 8 chr4 30735091 30735217 -153553445 - MIR SINE MIR 0 262 113 520 224 200 5 chr4 30735224 30735429 -153553233 - MIR SINE MIR 0 262 18 2220 102 0 17 chr4 30735750 30736045 -153552617 + AluSx SINE Alu 1 290 -22 254 182 55 18 chr4 30737228 30737283 -153551379 + MER117 DNA MER1_type 115 171 -26 186 283 0 0 chr4 30737310 30737356 -153551306 - MIR SINE MIR -68 140 95 * 423 282 69 0 chr4 30737341 30737472 -153551190 + L2 LINE L2 3174 3313 0 196 396 97 21 chr4 30738383 30738714 -153549948 + L3b LINE CR1 1113 1468 -115 469 313 125 7 chr4 30738715 30738996 -153549666 + L1MD3 LINE L1 5624 5937 -1871 307 290 0 61 chr4 30739469 30739600 -153549062 + MIR SINE MIR 98 220 -42 575 268 10 31 chr4 30740098 30740292 -153548370 - MER117 DNA MER1_type -6 191 2 2168 144 0 3 chr4 30740407 30740720 -153547942 - AluSx SINE Alu 0 312 1 213 191 0 21 chr4 30740747 30740794 -153547868 + L2 LINE L2 3001 3046 -267 459 280 76 42 chr4 30740889 30741059 -153547603 + MIR SINE MIR 3 185 -77 2057 109 3 20 chr4 30741059 30741353 -153547309 + AluSx SINE Alu 1 289 -23 459 280 76 42 chr4 30741353 30741418 -153547244 + MIR SINE MIR 185 246 -16 247 279 0 15 chr4 30741482 30741550 -153547112 + L2 LINE L2 3206 3272 0 667 308 100 25 chr4 30742153 30742896 -153545766 - L2 LINE L2 -77 3236 2430 656 241 93 12 chr4 30744404 30744619 -153544043 + L1MD3 LINE L1 6116 7978 -17 1767 158 0 4 chr4 30744628 30744893 -153543769 + AluJo SINE Alu 32 295 -17 454 262 37 48 chr4 30745290 30745477 -153543185 - MER5A DNA MER1_type -4 185 1 512 179 119 8 chr4 30745778 30745912 -153542750 - MIR SINE MIR -70 192 44 2441 89 0 13 chr4 30746013 30746327 -153542335 + AluSx SINE Alu 3 312 0 225 284 34 0 chr4 30746445 30746533 -153542129 + CT-rich Low_complexity Low_complexity 3 93 0 575 138 0 146 chr4 30748041 30748171 -153540491 + L1M3 LINE L1 5444 5554 -629 2224 178 95 6 chr4 30749144 30749616 -153539046 - Charlie1b DNA MER1_type 0 523 10 1706 187 6 19 chr4 30749986 30750301 -153538361 - AluJb SINE Alu -1 311 1 1619 226 118 48 chr4 30750586 30750934 -153537728 + L1ME3A LINE L1 5585 5986 -184 2281 103 3 3 chr4 30750934 30751235 -153537427 - AluSg SINE Alu -8 302 2 1619 226 118 48 chr4 30751235 30751426 -153537236 + L1ME3A LINE L1 5986 6162 -8 1728 186 3 22 chr4 30751460 30751778 -153536884 + AluJb SINE Alu 1 312 0 190 346 25 0 chr4 30752116 30752197 -153536465 + L2 LINE L2 3176 3258 -14 530 227 132 28 chr4 30752425 30752676 -153535986 + MER5C DNA MER1_type 47 323 -1 329 186 93 23 chr4 30753344 30753430 -153535232 - MLT1K LTR MaLR -12 576 485 255 191 111 0 chr4 30753567 30753630 -153535032 + L1ME LINE L1 5677 5746 -375 26 64 0 0 chr4 30753703 30753750 -153534912 + AT_rich Low_complexity Low_complexity 1 47 0 2116 121 7 13 chr4 30753932 30754239 -153534423 + AluSq SINE Alu 1 305 -8 519 17 0 0 chr4 30754239 30754299 -153534363 + (GGAA)n Simple_repeat Simple_repeat 1 60 0 934 275 146 38 chr4 30754489 30754940 -153533722 + MLT1K LTR MaLR 82 581 -7 2241 155 31 10 chr4 30754943 30755331 -153533331 - MSTD LTR MaLR 0 396 1 195 69 0 0 chr4 30755844 30755873 -153532789 + (T)n Simple_repeat Simple_repeat 1 29 0 476 317 0 28 chr4 30756448 30756649 -153532013 + C-rich Low_complexity Low_complexity 1 195 0 770 211 61 33 chr4 30757680 30757860 -153530802 - MER5A DNA MER1_type -4 185 1 2354 98 0 7 chr4 30759145 30759452 -153529210 - AluSg SINE Alu -5 305 1 2118 146 3 0 chr4 30759643 30759944 -153528718 + AluJb SINE Alu 5 306 -6 294 271 68 120 chr4 30760218 30760484 -153528178 + L2 LINE L2 3021 3272 0 277 271 14 0 chr4 30760491 30760561 -153528101 + CT-rich Low_complexity Low_complexity 3 73 0 2226 105 10 7 chr4 30761788 30762093 -153526569 + AluSg SINE Alu 3 308 -2 532 308 81 32 chr4 30762598 30762783 -153525879 - MIR SINE MIR -66 196 3 289 311 89 50 chr4 30762880 30763060 -153525602 + MIR SINE MIR 14 200 -62 607 263 84 53 chr4 30763315 30763638 -153525024 + MLT1F LTR MaLR 210 542 0 382 346 27 21 chr4 30763807 30763995 -153524667 - L3b LINE CR1 -86 1497 1309 1257 201 54 125 chr4 30764832 30764961 -153523701 + MLT1C LTR MaLR 1 138 -329 2108 131 7 13 chr4 30764961 30765266 -153523396 + AluSx SINE Alu 1 303 -9 1257 201 54 125 chr4 30765266 30765326 -153523336 + MLT1C LTR MaLR 138 201 -266 2203 127 10 0 chr4 30765326 30765634 -153523028 + AluSx SINE Alu 1 311 -1 1257 201 54 125 chr4 30765634 30765946 -153522716 + MLT1C LTR MaLR 201 467 0 228 340 31 0 chr4 30766196 30766293 -153522369 - MIR3 SINE MIR -2 206 107 24 32 0 0 chr4 30767871 30767902 -153520760 + AT_rich Low_complexity Low_complexity 1 31 0 892 172 80 18 chr4 30768896 30769059 -153519603 - FRAM SINE Alu -4 172 1 198 0 0 0 chr4 30769065 30769087 -153519575 + (GAAAA)n Simple_repeat Simple_repeat 2 23 0 390 236 107 29 chr4 30769266 30769406 -153519256 - HAL1 LINE L1 -1345 1162 1012 463 304 53 31 chr4 30769596 30769823 -153518839 - HAL1 LINE L1 -1915 592 361 1650 223 49 29 chr4 30770415 30770438 -153518224 - MLT1C LTR MaLR 0 467 446 2029 107 35 98 chr4 30770438 30770804 -153517858 + MER61A LTR ERV1 1 343 0 1650 223 49 29 chr4 30770804 30771233 -153517429 - MLT1C LTR MaLR -21 446 6 2485 86 0 0 chr4 30771385 30771686 -153516976 - AluSg SINE Alu -9 301 1 262 214 18 36 chr4 30771741 30771797 -153516865 + L2 LINE L2 3201 3255 -17 321 303 24 79 chr4 30771990 30772244 -153516418 + L2 LINE L2 2853 3092 -180 761 128 0 26 chr4 30772552 30772669 -153515993 + FLAM_C SINE Alu 19 132 -11 1316 248 49 27 chr4 30773021 30773428 -153515234 + LTR16C LTR ERVL 74 489 -2 1955 81 24 0 chr4 30773528 30773775 -153514887 + AluSx SINE Alu 1 253 -59 455 247 147 17 chr4 30774613 30774722 -153513940 - L1ME4a LINE L1 -31 6090 5997 255 61 0 0 chr4 30774722 30774755 -153513907 + (TG)n Simple_repeat Simple_repeat 2 34 0 455 247 147 17 chr4 30774755 30774876 -153513786 - L1ME4a LINE L1 -124 5997 5830 237 361 72 0 chr4 30775198 30775378 -153513284 - MIR3 SINE MIR -9 199 7 819 211 23 0 chr4 30777086 30777257 -153511405 - MER45A DNA AcHobo -1 177 3 593 295 14 17 chr4 30777380 30777641 -153511021 - MIR SINE MIR 0 262 45 307 320 145 13 chr4 30777861 30778089 -153510573 - MIR SINE MIR -1 261 4 180 286 0 0 chr4 30778093 30778135 -153510527 + L3 LINE CR1 1533 1574 -3 1329 240 35 9 chr4 30778752 30778981 -153509681 - MLT1C LTR MaLR -43 424 182 1927 158 23 0 chr4 30778981 30779285 -153509377 - AluJo SINE Alu -1 311 1 1329 240 35 9 chr4 30779285 30779401 -153509261 - MLT1C LTR MaLR -285 182 70 536 270 46 49 chr4 30779401 30779686 -153508976 - MER34B LTR ERV1 0 565 282 292 264 104 9 chr4 30779781 30779887 -153508775 - MER34B LTR ERV1 -449 116 1 658 187 110 87 chr4 30780013 30780232 -153508430 - MIR SINE MIR -11 251 28 7854 87 7 19 chr4 30780478 30781561 -153507101 + MER11C LTR ERVK 3 1071 0 745 291 141 6 chr4 30781624 30781944 -153506718 + L2 LINE L2 2951 3313 0 213 243 0 0 chr4 30782007 30782044 -153506618 + L2 LINE L2 3183 3219 -94 237 267 19 27 chr4 30782998 30783101 -153505561 + MIR SINE MIR 16 114 -94 580 125 0 31 chr4 30783290 30783386 -153505276 - MER8 DNA MER2_type 0 239 147 1688 119 16 4 chr4 30783387 30783638 -153505024 + AluSx SINE Alu 1 254 -58 1197 165 0 30 chr4 30784432 30784632 -153504030 + AluJo SINE Alu 85 278 -34 180 0 0 0 chr4 30784632 30784652 -153504010 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 332 253 79 105 chr4 30784747 30784937 -153503725 + MLT1L LTR MaLR 22 206 -409 2292 107 0 0 chr4 30785153 30785453 -153503209 - AluSx SINE Alu -12 300 1 580 125 0 31 chr4 30785454 30785550 -153503112 + MER8 DNA MER2_type 147 239 0 237 267 19 27 chr4 30785740 30785843 -153502819 - MIR SINE MIR -94 114 16 435 303 20 25 chr4 30786140 30786367 -153502295 + CT-rich Low_complexity Low_complexity 1 225 0 1531 188 52 4 chr4 30786802 30787073 -153501589 - AluJo SINE Alu -15 297 14 532 291 6 18 chr4 30787188 30787353 -153501309 - L2 LINE L2 -317 2996 2834 1577 237 100 59 chr4 30787386 30787481 -153501181 - L2 LINE L2 -958 2356 2266 2128 142 30 0 chr4 30787481 30787784 -153500878 + AluJo SINE Alu 1 312 0 1577 237 100 59 chr4 30787784 30788379 -153500283 - L2 LINE L2 -1048 2266 1638 273 286 0 0 chr4 30790687 30790750 -153497912 - MIR SINE MIR -107 155 93 2637 64 0 0 chr4 30791800 30792111 -153496551 + AluY SINE Alu 1 311 0 412 252 102 118 chr4 30792139 30792385 -153496277 - MIR SINE MIR 0 262 21 310 315 241 5 chr4 30792435 30792638 -153496024 + MIR SINE MIR 1 251 -11 228 217 19 0 chr4 30792760 30792812 -153495850 + MIR SINE MIR 104 155 -58 180 271 0 42 chr4 30793297 30793345 -153495317 + L2 LINE L2 3262 3307 -6 213 132 0 0 chr4 30793535 30793573 -153495089 + (GA)n Simple_repeat Simple_repeat 1 38 0 278 213 12 25 chr4 30793685 30793765 -153494897 + MLT1L LTR MaLR 6 84 -531 808 243 200 14 chr4 30793785 30794290 -153494372 + MLT2F LTR ERVL 3 660 -3 688 256 182 9 chr4 30794312 30794659 -153494003 + MLT1L LTR MaLR 130 536 -79 2521 165 50 42 chr4 30794665 30794814 -153493848 - MER44D DNA MER2_type -1882 605 459 2216 131 34 22 chr4 30794814 30795172 -153493490 + THE1B LTR MaLR 1 362 -2 2521 165 50 42 chr4 30795172 30795568 -153493094 - MER44D DNA MER2_type -2028 459 1 272 194 16 16 chr4 30795570 30795632 -153493030 + MLT1L LTR MaLR 544 605 -10 244 232 73 12 chr4 30796055 30796137 -153492525 + LTR50 LTR ERVL 128 214 -581 248 171 122 0 chr4 30796515 30796597 -153492065 + LTR33A LTR ERVL 417 508 -15 290 315 62 70 chr4 30796616 30796712 -153491950 - MLT1K LTR MaLR -71 517 422 1668 171 0 59 chr4 30796712 30796894 -153491768 - AluJo SINE Alu -10 302 146 2068 142 0 13 chr4 30796894 30797197 -153491465 - AluSx SINE Alu -13 299 1 1668 171 0 59 chr4 30797197 30797335 -153491327 - AluJo SINE Alu -166 146 1 290 315 62 70 chr4 30797335 30797641 -153491021 - MLT1K LTR MaLR -166 422 118 1334 151 14 5 chr4 30797817 30798036 -153490626 - MSTB LTR MaLR -4 422 202 1956 146 17 14 chr4 30798095 30798409 -153490253 - AluSx SINE Alu 0 312 1 218 246 59 42 chr4 30798901 30799019 -153489643 + L2 LINE L2 2939 3058 -214 1054 276 50 31 chr4 30799502 30799894 -153488768 - LTR16C LTR ERVL 0 491 87 1816 171 16 68 chr4 30799894 30800279 -153488383 + MLT1A1 LTR MaLR 1 365 0 1054 276 50 31 chr4 30800279 30800367 -153488295 - LTR16C LTR ERVL -404 87 2 423 263 71 45 chr4 30801249 30801447 -153487215 - MIR SINE MIR -48 214 12 437 267 85 23 chr4 30801923 30802099 -153486563 - MIR3 SINE MIR -17 191 5 279 150 0 0 chr4 30802117 30802177 -153486485 + (TG)n Simple_repeat Simple_repeat 2 61 0 2175 116 7 3 chr4 30802641 30802935 -153485727 + AluSx SINE Alu 1 295 -17 493 196 162 17 chr4 30802939 30803118 -153485544 + MLT1K LTR MaLR 261 465 -123 4127 126 172 97 chr4 30803120 30804551 -153484111 - pTR5 LTR ERV1 0 2438 743 1067 197 10 15 chr4 30804639 30804842 -153483820 + MIR SINE MIR 37 238 -24 1038 260 25 1 chr4 30804878 30805176 -153483486 - MLT1I LTR MaLR -24 385 41 25 0 0 0 chr4 30805278 30805303 -153483359 + AT_rich Low_complexity Low_complexity 1 25 0 1585 170 21 35 chr4 30805303 30805591 -153483071 - AluJo SINE Alu -24 288 5 1297 201 33 41 chr4 30805895 30806263 -153482399 - LTR16A1 LTR ERVL -91 366 2 652 267 134 43 chr4 30806924 30807156 -153481506 - MIR SINE MIR 0 262 10 246 226 0 0 chr4 30807229 30807282 -153481380 + MLT1J1 LTR MaLR 3 55 -391 188 275 0 0 chr4 30807289 30807329 -153481333 - MER5A DNA MER1_type 0 189 150 226 310 96 50 chr4 30807460 30807506 -153481156 - L2 LINE L2 -213 3059 3017 2190 120 13 3 chr4 30807506 30807814 -153480848 - AluSq SINE Alu -2 311 1 226 310 96 50 chr4 30807814 30808006 -153480656 - L2 LINE L2 -255 3017 2810 652 333 12 32 chr4 30808660 30808906 -153479756 + MIR SINE MIR 21 261 -1 303 303 154 34 chr4 30809549 30809906 -153478756 + L2 LINE L2 2565 2964 -350 420 301 56 42 chr4 30809983 30810126 -153478536 + L2 LINE L2 3126 3270 -2 2411 77 20 3 chr4 30810131 30810430 -153478232 - AluSp SINE Alu -9 304 1 3662 176 52 54 chr4 30811441 30812313 -153476349 + L1MC4 LINE L1 7168 8037 -5 1959 113 8 0 chr4 30812322 30812578 -153476084 + AluSx SINE Alu 1 258 -54 249 33 0 0 chr4 30812582 30812612 -153476050 + (TAA)n Simple_repeat Simple_repeat 1 30 0 219 296 34 34 chr4 30812618 30812706 -153475956 + MIR SINE MIR 35 122 -86 196 204 23 0 chr4 30812944 30812988 -153475674 - MIR SINE MIR -5 257 213 2041 144 0 0 chr4 30813341 30813646 -153475016 + AluSx SINE Alu 1 305 -7 201 305 12 49 chr4 30814028 30814110 -153474552 - MIR SINE MIR -135 127 49 280 293 164 29 chr4 30814447 30814609 -153474053 + MIR SINE MIR 1 183 -79 269 241 0 0 chr4 30816292 30816350 -153472312 - MIR SINE MIR -69 139 82 183 80 0 0 chr4 30817775 30817800 -153470862 + (A)n Simple_repeat Simple_repeat 1 25 0 420 257 35 0 chr4 30818420 30818533 -153470129 - MER117 DNA MER1_type -74 123 7 395 257 64 36 chr4 30818898 30819038 -153469624 + MIR SINE MIR 113 256 -6 1018 169 22 0 chr4 30819130 30819313 -153469349 + MER53 DNA DNA 1 187 -2 570 257 46 46 chr4 30819404 30819622 -153469040 + MER112 DNA MER1_type 4 221 -39 1250 206 20 19 chr4 30819628 30819717 -153468945 + MER58B DNA MER1_type 2 89 -2331 1743 180 23 3 chr4 30819717 30820023 -153468639 + AluSx SINE Alu 1 312 0 1250 206 20 19 chr4 30820023 30820316 -153468346 + MER58B DNA MER1_type 89 340 -1 761 212 145 6 chr4 30821060 30821239 -153467423 + MER58A DNA MER1_type 21 224 0 334 308 44 10 chr4 30822270 30822407 -153466255 + MIR SINE MIR 13 153 -55 517 260 6 44 chr4 30822495 30822676 -153465986 + L1ME LINE L1 5502 5675 -446 323 331 22 38 chr4 30822849 30823033 -153465629 - MIR SINE MIR -16 246 66 1406 208 77 55 chr4 30824454 30824906 -153463756 - MLT1C LTR MaLR 0 467 6 212 358 17 17 chr4 30825164 30825284 -153463378 + L2 LINE L2 2583 2702 -612 1615 186 64 59 chr4 30825542 30825998 -153462664 + MLT1C LTR MaLR 6 463 -4 454 325 45 0 chr4 30826014 30826171 -153462491 + MER91A DNA MER1_type 1 164 -32 295 272 162 98 chr4 30826181 30826446 -153462216 + L2 LINE L2 2989 3270 -2 303 210 51 35 chr4 30827467 30827591 -153461071 + MIR SINE MIR 19 146 -62 1959 107 0 52 chr4 30827604 30827894 -153460768 - AluSx SINE Alu -37 275 1 2034 176 19 3 chr4 30829119 30829478 -153459184 + MER47A DNA MER2_type 2 366 0 295 202 45 45 chr4 30829551 30829640 -153459022 - MIR SINE MIR -29 233 145 623 313 22 31 chr4 30829727 30829954 -153458708 - MIR SINE MIR -33 229 5 368 211 137 48 chr4 30830001 30830132 -153458530 - MER57B LTR ERV1 -243 160 42 4236 91 23 0 chr4 30831159 30831720 -153456942 - L1PB2 LINE L1 -4 6147 5574 2004 132 6 26 chr4 30831919 30832230 -153456432 - AluSx SINE Alu -7 305 1 445 293 98 32 chr4 30832509 30832725 -153455937 + MLT1G1 LTR MaLR 83 333 -262 1801 153 13 13 chr4 30832725 30833025 -153455637 + AluJb SINE Alu 9 308 -4 445 293 98 32 chr4 30833025 30833087 -153455575 + MLT1G1 LTR MaLR 333 389 -206 281 172 149 23 chr4 30833157 30833244 -153455418 + MLT1G1 LTR MaLR 498 595 0 205 321 70 95 chr4 30833252 30833769 -153454893 - L2 LINE L2 -1105 2209 1706 259 287 125 37 chr4 30833948 30834084 -153454578 + MIR3 SINE MIR 50 197 -11 4501 137 34 4 chr4 30834658 30835375 -153453287 - L1PB4 LINE L1 -7 6149 5412 610 233 31 31 chr4 30835497 30835626 -153453036 + FLAM_A SINE Alu 1 129 -4 225 94 0 0 chr4 30835626 30835658 -153453004 + (GA)n Simple_repeat Simple_repeat 1 32 0 * 300 107 0 67 chr4 30835655 30835730 -153452932 + (GGAA)n Simple_repeat Simple_repeat 4 73 0 797 246 8 90 chr4 30836168 30836424 -153452238 + MIR SINE MIR 7 241 -21 186 43 0 0 chr4 30836462 30836485 -153452177 + (T)n Simple_repeat Simple_repeat 1 23 0 900 293 54 103 chr4 30836696 30837591 -153451071 - L2 LINE L2 -1 3312 2464 1696 204 23 15 chr4 30837593 30837655 -153451007 + L1M4 LINE L1 903 963 -5579 2535 98 55 6 chr4 30837655 30838002 -153450660 - THE1B LTR MaLR 0 364 1 1696 204 23 15 chr4 30838002 30838335 -153450327 + L1M4 LINE L1 963 1301 -5241 2078 205 80 21 chr4 30838533 30839006 -153449656 - MLT1F1 LTR MaLR 0 567 67 2559 173 33 69 chr4 30839822 30840361 -153448301 + MLT2B1 LTR ERVL 1 520 0 261 341 8 16 chr4 30840970 30841099 -153447563 - L2 LINE L2 -2 3311 3184 358 310 67 50 chr4 30841143 30841382 -153447280 + L2 LINE L2 3003 3245 -68 212 288 34 0 chr4 30842725 30842784 -153445878 - MIR SINE MIR -73 189 129 1160 165 0 30 chr4 30843070 30843270 -153445392 + AluJo SINE Alu 85 278 -34 180 0 0 0 chr4 30843270 30843290 -153445372 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 358 253 79 105 chr4 30843385 30843575 -153445087 + MLT1L LTR MaLR 22 206 -409 1162 261 66 52 chr4 30843810 30844312 -153444350 + MLT1J LTR MaLR 3 511 0 288 231 0 15 chr4 30844365 30844430 -153444232 + MLT1L LTR MaLR 552 615 0 34 24 0 0 chr4 30845130 30845171 -153443491 + AT_rich Low_complexity Low_complexity 1 41 0 2031 156 0 0 chr4 30847620 30847915 -153440747 + AluSx SINE Alu 3 297 -15 650 274 97 15 chr4 30848459 30848693 -153439969 + MIR SINE MIR 2 248 -14 396 336 41 36 chr4 30848767 30848969 -153439693 + MIR SINE MIR 21 221 -27 2161 129 7 0 chr4 30849106 30849408 -153439254 - AluSx SINE Alu -8 304 1 381 22 0 0 chr4 30849414 30849460 -153439202 + (TC)n Simple_repeat Simple_repeat 2 47 0 198 0 0 0 chr4 30849499 30849521 -153439141 + (TC)n Simple_repeat Simple_repeat 2 23 0 245 343 20 0 chr4 30850712 30850811 -153437851 + LTR67 LTR ERVL 450 550 -7 1911 125 37 10 chr4 30852541 30852838 -153435824 - AluSq SINE Alu -8 305 1 230 173 0 19 chr4 30853953 30853962 -153434700 + (TATG)n Simple_repeat Simple_repeat 1 9 -42 2287 94 10 0 chr4 30853962 30854259 -153434403 + AluSq SINE Alu 1 300 -13 230 173 0 19 chr4 30854259 30854301 -153434361 + (TATG)n Simple_repeat Simple_repeat 9 51 0 202 133 0 67 chr4 30854491 30854551 -153434111 + (TATATG)n Simple_repeat Simple_repeat 5 60 0 1810 193 90 10 chr4 30854568 30854968 -153433694 - MER63B DNA MER1_type -1 435 4 2256 67 0 0 chr4 30855175 30855443 -153433219 - AluY SINE Alu -17 294 27 462 291 107 21 chr4 30857384 30857618 -153431044 + MIR SINE MIR 2 255 -7 21 0 0 0 chr4 30857647 30857668 -153430994 + AT_rich Low_complexity Low_complexity 1 21 0 235 203 16 23 chr4 30857708 30857836 -153430826 + (TA)n Simple_repeat Simple_repeat 1 127 0 208 279 29 67 chr4 30857916 30858020 -153430642 - L2 LINE L2 -4 3268 3169 523 332 32 32 chr4 30858735 30858988 -153429674 + MIR SINE MIR 10 262 0 234 0 0 0 chr4 30860501 30860527 -153428135 + (T)n Simple_repeat Simple_repeat 1 26 0 518 159 9 0 chr4 30860727 30860834 -153427828 + GA-rich Low_complexity Low_complexity 5 112 0 314 320 134 43 chr4 30861186 30861349 -153427313 - MIR SINE MIR -30 178 14 212 276 0 0 chr4 30861656 30861714 -153426948 + T-rich Low_complexity Low_complexity 1 58 0 469 286 161 30 chr4 30861776 30862143 -153426519 + MLT1K LTR MaLR 164 578 -10 935 227 84 0 chr4 30862516 30862719 -153425943 - MER58A DNA MER1_type -1 223 4 6903 117 64 26 chr4 30862819 30863842 -153424820 - Tigger3b DNA MER2_type -1797 1231 155 4321 114 31 1 chr4 30863842 30864201 -153424461 - L1PB1 LINE L1 -1 6150 5762 315 0 0 0 chr4 30864201 30864236 -153424426 + (TA)n Simple_repeat Simple_repeat 1 35 0 4321 114 31 1 chr4 30864236 30864527 -153424135 - L1PB1 LINE L1 -389 5762 5481 6903 117 64 26 chr4 30864527 30864689 -153423973 - Tigger3b DNA MER2_type -2873 155 1 1335 211 55 49 chr4 30864689 30865015 -153423647 - MLT1J LTR MaLR -109 402 75 2145 122 0 0 chr4 30865290 30865586 -153423076 + AluSx SINE Alu 1 296 -16 301 235 112 20 chr4 30865954 30866052 -153422610 - L2 LINE L2 -27 3286 3180 843 267 0 6 chr4 30866829 30867005 -153421657 - LTR16A LTR ERVL -260 190 16 235 329 101 57 chr4 30867415 30867573 -153421089 - L2 LINE L2 -190 3082 2918 700 253 48 11 chr4 30868164 30868350 -153420312 - MIR SINE MIR 0 262 70 2135 138 41 39 chr4 30868463 30868826 -153419836 + THE1B LTR MaLR 1 364 0 331 248 130 50 chr4 30868865 30869057 -153419605 - MIR SINE MIR -56 206 3 430 306 52 16 chr4 30869213 30869406 -153419256 + MIR3 SINE MIR 7 206 -2 2101 112 3 0 chr4 30869629 30869933 -153418729 - AluSx SINE Alu -7 305 1 307 217 70 77 chr4 30871037 30871180 -153417482 - MER112 DNA MER1_type -9 251 110 213 65 0 0 chr4 30871194 30871225 -153417437 + (CA)n Simple_repeat Simple_repeat 2 32 0 929 175 32 16 chr4 30871286 30871475 -153417187 + MLT1D LTR MaLR 6 197 -308 608 261 13 7 chr4 30871483 30871636 -153417026 + MLT1D LTR MaLR 350 503 -2 180 0 0 0 chr4 30872494 30872514 -153416148 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 196 355 21 21 chr4 30872972 30873065 -153415597 - MIR SINE MIR -56 206 114 670 219 22 0 chr4 30873067 30873204 -153415458 + FLAM_C SINE Alu 2 141 -2 183 288 40 64 chr4 30873204 30873248 -153415414 - MIR3 SINE MIR -84 124 80 1862 177 24 12 chr4 30873248 30873581 -153415081 + MER1B DNA MER1_type 1 337 0 183 288 40 64 chr4 30873581 30873661 -153415001 - MIR3 SINE MIR -128 80 3 205 297 139 10 chr4 30873980 30874081 -153414581 + MIR SINE MIR 23 136 -126 685 208 8 0 chr4 30874117 30874242 -153414420 - MER45A DNA AcHobo -52 126 1 222 295 89 18 chr4 30874343 30874455 -153414207 + MER5A DNA MER1_type 45 164 -25 186 333 74 25 chr4 30874399 30874480 -153414182 - MER5A DNA MER1_type -98 91 7 * 373 270 40 0 chr4 30875055 30875155 -153413507 - MIR SINE MIR -41 221 118 532 262 35 47 chr4 30875195 30875367 -153413295 - MIR SINE MIR -73 189 20 2099 147 45 17 chr4 30875658 30876012 -153412650 - THE1B LTR MaLR 0 364 1 296 299 91 86 chr4 30876497 30876718 -153411944 - MIR SINE MIR -27 235 14 251 281 66 41 chr4 30877275 30877396 -153411266 + MIR SINE MIR 30 153 -109 631 292 92 77 chr4 30877550 30878070 -153410592 + MLT1K LTR MaLR 39 566 -22 422 259 75 20 chr4 30878965 30879112 -153409550 + MIR SINE MIR 106 260 -2 271 291 13 13 chr4 30879794 30879873 -153408789 + MIR SINE MIR 72 150 -112 732 245 115 36 chr4 30880076 30880329 -153408333 - MLT1K LTR MaLR 0 615 316 351 0 0 0 chr4 30880606 30880645 -153408017 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 575 321 110 5 chr4 30880783 30880992 -153407670 + MIR SINE MIR 15 245 -17 1899 165 18 3 chr4 30881289 30881628 -153407034 - L1MA5 LINE L1 -5 6295 5952 240 35 0 0 chr4 30882622 30882651 -153406011 + (TG)n Simple_repeat Simple_repeat 1 29 0 1951 114 0 0 chr4 30882664 30882928 -153405734 - AluSx SINE Alu -30 282 19 915 271 51 26 chr4 30883031 30883304 -153405358 + L2 LINE L2 2537 2816 -498 604 220 215 16 chr4 30883309 30883495 -153405167 + MLT1G1 LTR MaLR 343 588 -2 1760 167 0 3 chr4 30883509 30883809 -153404853 + AluJb SINE Alu 1 299 -13 2089 131 3 0 chr4 30884130 30884436 -153404226 - AluSx SINE Alu -5 307 1 634 291 64 37 chr4 30884819 30885115 -153403547 - L3 LINE CR1 -636 941 638 1936 212 18 20 chr4 30885736 30885800 -153402862 + L1M4 LINE L1 4787 4850 -1296 1598 189 3 31 chr4 30885800 30886117 -153402545 - AluJb SINE Alu -4 308 1 1936 212 18 20 chr4 30886117 30886501 -153402161 + L1M4 LINE L1 4850 5234 -912 458 296 83 92 chr4 30886501 30886956 -153401706 - L2 LINE L2 -89 3224 2777 486 231 50 31 chr4 30887024 30887184 -153401478 - LTR67 LTR ERVL 0 557 395 445 314 0 8 chr4 30887364 30887485 -153401177 - LTR67 LTR ERVL -391 166 47 786 81 18 0 chr4 30887489 30887600 -153401062 - AluY SINE Alu -10 301 189 966 306 77 38 chr4 30887664 30887763 -153400899 - L2 LINE L2 -660 2654 2560 803 191 73 11 chr4 30887763 30887941 -153400721 + MER5A DNA MER1_type 1 189 0 966 306 77 38 chr4 30887941 30888504 -153400158 - L2 LINE L2 -754 2560 1966 280 318 68 23 chr4 30889060 30889192 -153399470 + MIR3 SINE MIR 11 148 -60 1883 168 115 6 chr4 30889328 30889685 -153398977 + MSTD LTR MaLR 1 396 0 234 300 27 40 chr4 30890123 30890273 -153398389 - MIR3 SINE MIR -35 173 26 390 297 0 0 chr4 30890327 30890418 -153398244 - MIR SINE MIR -5 257 167 * 511 268 176 0 chr4 30890415 30890557 -153398105 + MIR SINE MIR 77 243 -19 318 336 6 0 chr4 30891456 30891570 -153397092 - MIR SINE MIR -55 153 41 272 242 15 0 chr4 30892248 30892314 -153396348 + MLT1I LTR MaLR 327 393 -16 196 318 0 0 chr4 30892328 30892372 -153396290 - MIR SINE MIR -161 101 58 564 291 143 14 chr4 30892382 30892605 -153396057 - MIR SINE MIR -9 253 2 5592 114 28 12 chr4 30892795 30893642 -153395020 - Tigger4(Zombi) DNA MER2_type 0 2731 1871 512 111 14 0 chr4 30893641 30893713 -153394949 - Tigger4(Zombi) DNA MER2_type -2587 144 72 * 884 78 0 0 chr4 30893713 30893828 -153394834 + AluSg/x SINE Alu 178 292 -20 330 190 0 0 chr4 30893828 30893886 -153394776 - Tigger4(Zombi) DNA MER2_type -2673 58 1 570 307 84 31 chr4 30894059 30894284 -153394378 + MIR SINE MIR 20 256 -6 1621 206 130 3 chr4 30894488 30894866 -153393796 - MSTB LTR MaLR 0 426 1 2127 96 0 0 chr4 30895305 30895586 -153393076 - AluSx SINE Alu -12 300 20 324 313 120 19 chr4 30895877 30896085 -153392577 + MIR SINE MIR 34 262 0 195 184 0 0 chr4 30896342 30896380 -153392282 + (TA)n Simple_repeat Simple_repeat 2 39 0 2106 129 0 0 chr4 30896437 30896746 -153391916 + AluSx SINE Alu 1 309 -3 388 265 169 7 chr4 30896894 30897030 -153391632 - MIR SINE MIR -77 185 28 269 249 7 74 chr4 30897526 30897659 -153391003 + AluJ/FRAM SINE Alu 227 291 -11 1297 250 165 56 chr4 30897690 30897805 -153390857 + L2 LINE L2 2355 2456 -857 2379 69 13 0 chr4 30897805 30898110 -153390552 - AluY SINE Alu -2 309 1 1297 250 165 56 chr4 30898110 30898848 -153389814 + L2 LINE L2 2456 3309 -4 2161 114 62 28 chr4 30899797 30900149 -153388513 - THE1B LTR MaLR 0 364 1 1013 182 223 31 chr4 30900491 30900557 -153388105 + L1ME1 LINE L1 5808 5860 -306 1280 171 9 0 chr4 30900557 30900774 -153387888 + MER20 DNA MER1_type 1 219 0 1013 182 223 31 chr4 30900774 30900998 -153387664 + L1ME1 LINE L1 5860 6154 -12 1811 156 0 28 chr4 30901132 30901452 -153387210 + AluJb SINE Alu 1 311 -1 579 227 25 12 chr4 30901562 30901576 -153387086 - L1MA10 LINE L1 0 6334 6321 384 323 46 26 chr4 30901576 30901771 -153386891 - L1ME1 LINE L1 -5 6161 5963 1946 151 0 0 chr4 30902326 30902638 -153386024 - AluJb SINE Alu 0 312 1 2749 162 32 0 chr4 30902990 30903490 -153385172 - L1MB3 LINE L1 -7 6176 5661 212 0 36 0 chr4 30903589 30903617 -153385045 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 211 333 42 0 chr4 30905565 30905661 -153383001 + L2 LINE L2 2745 2844 -470 * 268 313 107 27 chr4 30905638 30905750 -153382912 + L2 LINE L2 3102 3222 -50 215 146 24 0 chr4 30905761 30905802 -153382860 + GA-rich Low_complexity Low_complexity 2 43 0 682 171 9 0 chr4 30906188 30906299 -153382363 - FRAM SINE Alu -11 165 54 1313 244 132 28 chr4 30906338 30906777 -153381885 - L2 LINE L2 -1145 2169 1670 2218 76 0 20 chr4 30906777 30907081 -153381581 + AluSg1 SINE Alu 1 298 -11 1313 244 132 28 chr4 30907081 30907140 -153381522 - L2 LINE L2 -1644 1670 1619 24 32 0 0 chr4 30907432 30907463 -153381199 + AT_rich Low_complexity Low_complexity 1 31 0 355 241 149 0 chr4 30907567 30907654 -153381008 - L2 LINE L2 -1 3312 3213 333 353 75 6 chr4 30908399 30908572 -153380090 + MIR SINE MIR 12 196 -66 206 261 0 0 chr4 30908675 30908721 -153379941 + (TATG)n Simple_repeat Simple_repeat 1 46 0 859 293 79 38 chr4 30909319 30909711 -153378951 + LTR33A LTR ERVL 2 409 -114 253 162 15 73 chr4 30910145 30910213 -153378449 + MLT1H LTR MaLR 20 83 -459 700 222 122 71 chr4 30910355 30910666 -153377996 + MLT1H LTR MaLR 217 543 -6 263 305 43 105 chr4 30912077 30912287 -153376375 + L2 LINE L2 3075 3271 -1 232 307 59 30 chr4 30912309 30912410 -153376252 - MIR SINE MIR -147 115 12 300 328 9 17 chr4 30912492 30912608 -153376054 - MIR3 SINE MIR -5 203 89 2000 112 0 17 chr4 30912689 30912985 -153375677 - AluSx SINE Alu -20 292 2 208 189 0 38 chr4 30916202 30916255 -153372407 + CT-rich Low_complexity Low_complexity 4 54 0 394 310 121 55 chr4 30916288 30916488 -153372174 + L2 LINE L2 1776 1961 -1353 1621 138 0 50 chr4 30916488 30916786 -153371876 - AluJb SINE Alu -17 295 13 394 310 121 55 chr4 30916786 30917166 -153371496 + L2 LINE L2 1961 2394 -920 463 278 204 21 chr4 30917294 30917485 -153371177 - MIR SINE MIR 0 262 37 820 250 56 49 chr4 30917832 30918116 -153370546 - MLT1J LTR MaLR -2 509 224 242 158 0 0 chr4 30918238 30918276 -153370386 - L1MD3 LINE L1 -228 7767 7730 2219 254 84 33 chr4 30918286 30919011 -153369651 - MER69B DNA AcHobo -258 968 207 684 167 83 5 chr4 30919023 30919215 -153369447 + MER69B DNA AcHobo 1004 1210 -16 1737 148 0 3 chr4 30919225 30919508 -153369154 + AluJo SINE Alu 1 282 -30 276 30 0 0 chr4 30919508 30919541 -153369121 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 357 204 169 38 chr4 30920127 30920355 -153368307 + LTR16C LTR ERVL 158 467 -24 734 229 78 33 chr4 30922255 30922666 -153365996 + MLT1K LTR MaLR 100 576 -12 213 39 0 0 chr4 30922666 30922692 -153365970 + (CA)n Simple_repeat Simple_repeat 1 26 0 2327 158 35 5 chr4 30923278 30923336 -153365326 - MER41B LTR ERV1 0 635 580 1760 141 30 3 chr4 30923336 30923633 -153365029 + AluSx SINE Alu 1 305 -7 2327 158 35 5 chr4 30923633 30923980 -153364682 - MER41B LTR ERV1 -55 580 218 446 81 0 0 chr4 30923981 30924043 -153364619 + Alu SINE Alu 240 301 -11 369 305 93 13 chr4 30924679 30924830 -153363832 + L2 LINE L2 3110 3272 0 315 323 0 0 chr4 30924925 30925021 -153363641 + MER34 LTR ERV1 1 96 -446 1594 195 98 30 chr4 30925026 30925487 -153363175 + LTR48B LTR ERV1 151 642 -2 602 219 178 56 chr4 30925540 30925782 -153362880 + MLT1H LTR MaLR 222 506 -43 2283 116 48 20 chr4 30925782 30926136 -153362526 + THE1B LTR MaLR 1 364 0 602 219 178 56 chr4 30926136 30926180 -153362482 + MLT1H LTR MaLR 506 543 -6 238 329 24 12 chr4 30926190 30926272 -153362390 - MIR SINE MIR -63 145 63 758 183 71 24 chr4 30926458 30926627 -153362035 + MER5B DNA MER1_type 2 178 0 260 255 57 66 chr4 30926660 30926766 -153361896 + L3 LINE CR1 1186 1290 -287 1921 176 32 19 chr4 30927054 30927423 -153361239 - MLT1A2 LTR MaLR 0 374 1 443 282 173 0 chr4 30927759 30927915 -153360747 + MER5A DNA MER1_type 7 189 0 845 283 55 0 chr4 30930116 30930335 -153358327 - MIR SINE MIR -27 235 5 362 236 32 71 chr4 30930493 30930663 -153357999 + MER5B DNA MER1_type 9 173 -16 297 309 40 47 chr4 30930538 30930687 -153357975 - MER5A DNA MER1_type -41 148 1 * 247 345 56 25 chr4 30930844 30931041 -153357621 - L2 LINE L2 -188 3084 2882 360 0 0 0 chr4 30931473 30931513 -153357149 + (CA)n Simple_repeat Simple_repeat 2 41 0 351 282 126 24 chr4 30931855 30932061 -153356601 - MLT1K LTR MaLR -3 585 359 263 254 32 0 chr4 30932148 30932211 -153356451 - MLT1K LTR MaLR -367 221 157 210 315 81 34 chr4 30932364 30932513 -153356149 - L2 LINE L2 -185 3087 2932 685 124 25 58 chr4 30932676 30932797 -153355865 + AluJ SINE Alu 6 122 -190 396 243 0 0 chr4 30932797 30932908 -153355754 + (TA)n Simple_repeat Simple_repeat 1 111 0 946 169 18 0 chr4 30932910 30933076 -153355586 + AluJ SINE Alu 131 299 -13 349 300 107 29 chr4 30933448 30933588 -153355074 - L2 LINE L2 0 3272 3122 189 0 0 0 chr4 30933755 30933776 -153354886 + (GA)n Simple_repeat Simple_repeat 2 22 0 499 271 70 73 chr4 30933906 30934220 -153354442 - L1MDa LINE L1 -1805 4324 4012 526 266 126 33 chr4 30934462 30935331 -153353331 - L1MDa LINE L1 -3139 2990 2031 2157 97 0 57 chr4 30935520 30935851 -153352811 + AluSx SINE Alu 1 312 0 22 0 0 0 chr4 30935874 30935896 -153352766 + AT_rich Low_complexity Low_complexity 1 22 0 231 275 0 0 chr4 30936068 30936137 -153352525 - HAL1 LINE L1 -901 1606 1538 981 277 40 8 chr4 30936147 30936400 -153352262 + MIR SINE MIR 2 262 0 326 261 35 70 chr4 30936403 30936510 -153352152 - L1MDa LINE L1 -4844 1466 1364 1192 40 0 14 chr4 30936510 30936658 -153352004 + L1PA5 LINE L1 6005 6150 -4 326 261 35 70 chr4 30936658 30936692 -153351970 - L1MDa LINE L1 -4946 1364 1330 229 283 50 68 chr4 30936701 30937023 -153351639 - L1MDa LINE L1 -4885 1234 908 2028 141 3 3 chr4 30937023 30937336 -153351326 - AluSp SINE Alu 0 313 1 229 283 50 68 chr4 30937336 30937361 -153351301 - L1MDa LINE L1 -5211 908 884 1599 82 0 32 chr4 30937361 30937581 -153351081 + AluY SINE Alu 86 298 -13 229 283 50 68 chr4 30937581 30937631 -153351031 - L1MDa LINE L1 -5235 884 843 258 351 65 7 chr4 30938483 30938637 -153350025 - L2 LINE L2 -1403 1911 1749 344 270 195 45 chr4 30938739 30938939 -153349723 + MIR SINE MIR 13 242 -20 2000 191 12 11 chr4 30938967 30939347 -153349315 + MLT2D LTR ERVL 8 534 -20 417 179 20 20 chr4 30939350 30939501 -153349161 + (TCTA)n Simple_repeat Simple_repeat 3 153 0 364 286 67 82 chr4 30939508 30939850 -153348812 - L1MEd LINE L1 -4938 1181 845 189 0 0 0 chr4 30939850 30939871 -153348791 + (TCTA)n Simple_repeat Simple_repeat 1 21 0 268 136 15 91 chr4 30939871 30939937 -153348725 + MLT2B3 LTR ERVL 458 552 -2 2357 86 0 0 chr4 30941549 30941853 -153346809 - AluSx SINE Alu -8 304 1 333 259 83 139 chr4 30941944 30942403 -153346259 - MLT1K LTR MaLR 0 588 156 626 226 65 45 chr4 30943030 30943229 -153345433 - MLT1K LTR MaLR -1 587 385 816 281 87 8 chr4 30944022 30944264 -153344398 + MIR SINE MIR 2 262 0 348 269 97 28 chr4 30944340 30944485 -153344177 + MIR SINE MIR 102 256 -6 376 299 147 43 chr4 30944544 30944775 -153343887 - MLT1K LTR MaLR -7 581 327 416 134 0 15 chr4 30944780 30944847 -153343815 + MIR SINE MIR 96 161 -101 620 318 41 34 chr4 30944892 30945159 -153343503 - MLT1K LTR MaLR -276 312 44 320 273 45 45 chr4 30945192 30945324 -153343338 + MIR SINE MIR 13 144 -118 1022 216 56 42 chr4 30945356 30945783 -153342879 - L1MC5 LINE L1 -35 7926 7494 2035 121 3 7 chr4 30945806 30946111 -153342551 - AluSx SINE Alu -8 304 1 524 189 60 153 chr4 30946116 30946213 -153342449 - L1MC5 LINE L1 -135 7826 7722 1957 123 3 20 chr4 30946213 30946514 -153342148 - AluSx SINE Alu -16 296 1 524 189 60 153 chr4 30946514 30946912 -153341750 - L1MC5 LINE L1 -239 7722 7377 479 313 56 0 chr4 30946913 30947108 -153341554 + MIR SINE MIR 16 221 -41 2032 183 27 36 chr4 30947149 30947370 -153341292 + L1MB3 LINE L1 5731 5952 -231 2025 116 18 0 chr4 30947370 30947654 -153341008 + AluSq SINE Alu 3 291 -22 2032 183 27 36 chr4 30947654 30947881 -153340781 + L1MB3 LINE L1 5952 6175 -8 440 267 56 0 chr4 30948754 30948915 -153339747 - LTR16A LTR ERVL -5 445 276 1837 157 26 50 chr4 30948918 30949044 -153339618 - MLT1B LTR MaLR 0 390 263 2165 114 0 13 chr4 30949044 30949359 -153339303 - AluSx SINE Alu -1 311 1 1837 157 26 50 chr4 30949359 30949456 -153339206 - MLT1B LTR MaLR -127 263 165 2177 88 26 3 chr4 30949456 30949761 -153338901 - AluSp SINE Alu -1 312 1 1837 157 26 50 chr4 30949761 30949913 -153338749 - MLT1B LTR MaLR -225 165 23 860 268 61 0 chr4 30949945 30950158 -153338504 - LTR16A LTR ERVL -168 282 57 1478 228 18 73 chr4 30950708 30950953 -153337709 + MLT1C LTR MaLR 42 252 -215 2212 98 3 0 chr4 30950953 30951248 -153337414 + AluSp SINE Alu 1 296 -17 1478 228 18 73 chr4 30951248 30951453 -153337209 + MLT1C LTR MaLR 252 467 0 643 138 0 0 chr4 30951550 30951644 -153337018 + AluJ/FLAM SINE Alu 3 96 -216 2020 133 3 0 chr4 30951644 30951944 -153336718 + AluSx SINE Alu 1 301 -11 180 357 30 60 chr4 30952078 30952378 -153336284 - L2 LINE L2 -338 2976 2686 292 277 209 14 chr4 30952898 30953046 -153335616 + MIR SINE MIR 37 213 -49 240 227 45 73 chr4 30953301 30953411 -153335251 + L1ME LINE L1 5764 5870 -300 498 313 86 15 chr4 30953418 30953616 -153335046 - MIR SINE MIR -17 245 34 267 103 0 0 chr4 30953636 30953675 -153334987 + (CA)n Simple_repeat Simple_repeat 1 39 0 1971 78 3 71 chr4 30953679 30954013 -153334649 - AluSp SINE Alu 0 313 1 1329 247 93 21 chr4 30954075 30954561 -153334101 + LTR33A LTR ERVL 1 521 -2 184 358 12 12 chr4 30954598 30954679 -153333983 + MIR SINE MIR 17 97 -111 1399 162 45 42 chr4 30954710 30955019 -153333643 - AluJo SINE Alu -2 310 1 198 0 0 0 chr4 30955102 30955124 -153333538 + (TG)n Simple_repeat Simple_repeat 1 22 0 1937 111 0 3 chr4 30955272 30955560 -153333102 + AluSx SINE Alu 1 287 -25 198 93 0 116 chr4 30957340 30957383 -153331279 - L2 LINE L2 0 3272 3235 616 264 111 0 chr4 30957427 30957643 -153331019 - L2 LINE L2 -342 2972 2733 620 276 62 58 chr4 30958188 30958359 -153330303 + MIR SINE MIR 37 211 -51 2103 114 7 0 chr4 30958359 30958657 -153330005 + AluSx SINE Alu 1 300 -12 620 276 62 58 chr4 30958657 30958710 -153329952 + MIR SINE MIR 211 262 0 254 324 29 9 chr4 30959023 30959128 -153329534 + MIR SINE MIR 30 136 -72 1560 103 65 0 chr4 30959200 30959432 -153329230 - AluSx SINE Alu -23 289 43 550 231 41 8 chr4 30959432 30959553 -153329109 + MIR SINE MIR 35 159 -103 1960 129 90 31 chr4 30959557 30959914 -153328748 + MLT1B LTR MaLR 1 378 -12 302 318 11 0 chr4 30959924 30960012 -153328650 + MIR SINE MIR 161 249 -13 1993 119 3 17 chr4 30960137 30960439 -153328223 + AluSx SINE Alu 1 298 -14 815 218 78 22 chr4 30960848 30961027 -153327635 + MSTD LTR MaLR 208 396 0 391 199 47 170 chr4 30961035 30961130 -153327532 + MIR SINE MIR 113 179 -83 1958 119 11 0 chr4 30961130 30961416 -153327246 + AluSx SINE Alu 1 289 -23 391 199 47 170 chr4 30961416 30961491 -153327171 + MIR SINE MIR 179 262 0 609 298 132 10 chr4 30961501 30961706 -153326956 - MIR SINE MIR 0 262 33 1171 289 12 56 chr4 30962383 30962881 -153325781 - MLT1J LTR MaLR 0 511 36 272 221 44 0 chr4 30963107 30963175 -153325487 + MIR SINE MIR 118 188 -74 499 252 87 0 chr4 30963216 30963343 -153325319 + MIR SINE MIR 90 227 -35 1339 203 44 15 chr4 30963375 30963646 -153325016 + AluJo SINE Alu 12 290 -22 935 198 142 81 chr4 30963717 30964112 -153324550 - LTR37B LTR ERV1 -2 466 48 713 199 8 0 chr4 30964139 30964270 -153324392 + FLAM_A SINE Alu 1 132 -1 262 95 0 0 chr4 30964284 30964326 -153324336 + L1MA7 LINE L1 6249 6290 -1 231 167 67 17 chr4 30964331 30964391 -153324271 - LTR37B LTR ERV1 -405 63 1 666 244 19 12 chr4 30964560 30964720 -153323942 + MER8 DNA MER2_type 1 161 -78 62 0 0 0 chr4 30964733 30964795 -153323867 + AT_rich Low_complexity Low_complexity 1 62 0 2545 43 3 17 chr4 30964802 30965103 -153323559 + AluY SINE Alu 1 297 -14 697 263 63 70 chr4 30965207 30965538 -153323124 + MLT1H LTR MaLR 212 540 -9 450 53 0 0 chr4 30966371 30966428 -153322234 + (TC)n Simple_repeat Simple_repeat 1 57 0 291 289 33 0 chr4 30966649 30966739 -153321923 - MIR SINE MIR -86 176 84 247 254 14 28 chr4 30967055 30967126 -153321536 + MER103 DNA DNA 64 133 -33 2505 68 0 0 chr4 30967368 30967662 -153321000 - AluY SINE Alu -17 294 1 599 299 39 19 chr4 30967668 30967875 -153320787 - MLT1J LTR MaLR -292 219 9 728 248 78 14 chr4 30967954 30968172 -153320490 - MLT1I LTR MaLR 0 409 178 1237 238 41 33 chr4 30968467 30968838 -153319824 + MLT1H LTR MaLR 90 549 0 408 239 172 75 chr4 30968838 30969082 -153319580 - LTR67 LTR ERVL -46 511 242 424 214 60 119 chr4 30969365 30969566 -153319096 - MLT1L LTR MaLR -421 194 6 487 259 18 0 chr4 30969687 30969799 -153318863 + MER81 DNA DNA 1 114 0 938 234 36 0 chr4 30969971 30970193 -153318469 - MIR SINE MIR -32 230 1 250 192 29 48 chr4 30971698 30971802 -153316860 + (CATATA)n Simple_repeat Simple_repeat 3 104 0 12063 25 2 0 chr4 30973160 30975321 -153313341 - L1PA3 LINE L1 0 6155 3993 19308 50 1 3 chr4 30975321 30977668 -153310994 - L1PA3 LINE L1 -3800 2346 5 1844 169 3 13 chr4 30977703 30978016 -153310646 + AluJb SINE Alu 1 310 -2 338 366 83 24 chr4 30978242 30978447 -153310215 + MIR SINE MIR 46 262 0 849 166 43 7 chr4 30978860 30978999 -153309663 + AluJb SINE Alu 131 274 -38 268 204 48 29 chr4 30979179 30979282 -153309380 - MIR3 SINE MIR -23 185 81 22 0 0 0 chr4 30980021 30980043 -153308619 + AT_rich Low_complexity Low_complexity 1 22 0 314 224 71 12 chr4 30980083 30980168 -153308494 + MIR SINE MIR 146 235 -27 480 281 46 13 chr4 30980203 30980356 -153308306 - MIR SINE MIR -101 161 4 2465 97 0 0 chr4 30980572 30980880 -153307782 - AluSx SINE Alu -4 308 1 1409 267 115 18 chr4 31031172 31031669 -153256993 + L2 LINE L2 2467 3008 -305 330 211 164 19 chr4 31031696 31031800 -153256862 - L1MC4 LINE L1 -1069 6973 6855 22 0 0 0 chr4 31032054 31032076 -153256586 + AT_rich Low_complexity Low_complexity 1 22 0 192 188 0 0 chr4 31032165 31032197 -153256465 + L2 LINE L2 3268 3299 -14 243 0 0 0 chr4 31034392 31034419 -153254243 + (TG)n Simple_repeat Simple_repeat 2 28 0 259 329 12 0 chr4 31034489 31034571 -153254091 - L2 LINE L2 -218 3054 2972 708 160 11 48 chr4 31035275 31035463 -153253199 + L1 LINE L1 2859 3039 -3107 4262 241 91 5 chr4 31035473 31036511 -153252151 + L1PA13 LINE L1 1 1127 -5660 338 119 0 0 chr4 31036511 31036570 -153252092 + L1PA13 LINE L1 1648 1706 -5081 404 251 63 63 chr4 31036670 31036861 -153251801 + MER112 DNA MER1_type 70 260 0 337 167 225 0 chr4 31037372 31037482 -153251180 + MIR SINE MIR 50 189 -73 4698 144 8 13 chr4 31037822 31038602 -153250060 + THE1B-int LTR MaLR 568 1343 -237 1648 113 0 4 chr4 31038602 31038841 -153249821 + THE1B LTR MaLR 127 364 0 987 218 0 0 chr4 31038844 31039050 -153249612 - L1P LINE L1 -3347 2799 2594 6020 139 36 6 chr4 31039150 31040241 -153248421 - Tigger1 DNA MER2_type -531 1887 765 398 95 16 0 chr4 31040356 31040419 -153248243 - MER31A LTR ERV1 -420 65 2 1422 111 10 14 chr4 31041178 31041385 -153247277 - AluSg/x SINE Alu -14 298 93 391 313 89 18 chr4 31041486 31041710 -153246952 - L1MEc LINE L1 -4246 2150 1911 21 36 0 0 chr4 31042384 31042412 -153246250 + AT_rich Low_complexity Low_complexity 1 28 0 185 344 0 0 chr4 31042492 31042553 -153246109 + L2 LINE L2 3247 3307 -6 4304 40 8 0 chr4 31042688 31043469 -153245193 - L1P2 LINE L1 -354 5801 5017 3278 50 5 0 chr4 31043465 31043903 -153244759 + L1P LINE L1 3666 4105 -2041 * 5926 131 19 20 chr4 31044003 31045021 -153243641 + MER11C LTR ERVK 55 1071 0 1937 109 0 4 chr4 31045021 31045297 -153243365 + HERVK11 LTR ERVK 1 275 -7678 222 37 0 0 chr4 31045401 31045428 -153243234 + (TG)n Simple_repeat Simple_repeat 2 28 0 2172 160 75 55 chr4 31046789 31047295 -153241367 + LTR44 LTR ERV1 2 517 -2 321 318 16 0 chr4 31047997 31048126 -153240536 + L1ME2 LINE L1 5535 5665 -2330 1087 265 106 26 chr4 31048141 31048631 -153240031 - MLT1H1 LTR MaLR -15 540 12 1255 193 105 55 chr4 31048643 31049100 -153239562 + L1ME2 LINE L1 5676 6155 -9 228 289 167 18 chr4 31049964 31050078 -153238584 + L2 LINE L2 3142 3272 0 4342 75 0 61 chr4 31050937 31051663 -153236999 + MER11A LTR ERVK 439 1261 -5 654 13 0 0 chr4 31051665 31051740 -153236922 + (TA)n Simple_repeat Simple_repeat 1 75 0 985 248 11 7 chr4 31051744 31052014 -153236648 - AluSx SINE Alu -1 311 41 312 314 51 17 chr4 31052239 31052357 -153236305 - MIR SINE MIR -23 239 118 382 335 79 29 chr4 31053737 31054055 -153234607 - L2 LINE L2 -196 3076 2742 209 369 41 16 chr4 31054084 31054206 -153234456 - L2 LINE L2 -655 2659 2535 344 273 63 42 chr4 31054275 31054418 -153234244 - MER5B DNA MER1_type -19 159 14 1152 304 54 25 chr4 31054440 31054923 -153233739 + L2 LINE L2 2146 2642 -672 1346 123 0 0 chr4 31054930 31055109 -153233553 - AluSg/x SINE Alu -15 297 119 245 358 20 13 chr4 31055366 31055517 -153233145 + L1MEd LINE L1 595 746 -5373 498 276 77 35 chr4 31055777 31056063 -153232599 + L1MEd LINE L1 958 1255 -4864 4492 28 1 1 chr4 31056447 31057210 -153231452 - L1P2 LINE L1 -570 5584 4822 * 7962 33 0 0 chr4 31057209 31058214 -153230448 + L1P LINE L1 4346 5350 -796 278 22 0 67 chr4 31058338 31058383 -153230279 + MADE1 DNA Mariner 2 43 -37 2082 114 0 4 chr4 31058394 31058675 -153229987 - AluSx SINE Alu -32 280 1 497 179 0 0 chr4 31058675 31058759 -153229903 - MLT1A1 LTR MaLR -281 84 1 320 196 0 0 chr4 31058939 31058995 -153229667 - L2 LINE L2 -4 3309 3254 32 57 0 0 chr4 31060286 31060339 -153228323 + AT_rich Low_complexity Low_complexity 1 53 0 534 272 0 0 chr4 31060918 31061080 -153227582 + (TATATG)n Simple_repeat Simple_repeat 6 167 0 301 333 0 0 chr4 31061086 31061176 -153227486 + L1MC4 LINE L1 6614 6703 -1339 46 67 0 33 chr4 31061234 31061289 -153227373 + AT_rich Low_complexity Low_complexity 1 56 -89 1855 135 14 35 chr4 31061289 31061577 -153227085 - AluSx SINE Alu -14 298 17 46 67 0 33 chr4 31061577 31061671 -153226991 + AT_rich Low_complexity Low_complexity 56 145 0 877 169 33 16 chr4 31061675 31061858 -153226804 - L1MB7 LINE L1 -29 6155 5970 335 149 15 0 chr4 31061865 31061932 -153226730 - Alu SINE Alu 0 302 235 253 191 0 0 chr4 31062473 31062520 -153226142 - L2 LINE L2 -1 3312 3266 234 163 0 0 chr4 31063841 31063884 -153224778 - MLT1G3 LTR MaLR -228 302 260 2226 214 14 40 chr4 31064067 31064586 -153224076 + MLT1D LTR MaLR 1 505 0 199 299 124 55 chr4 31064652 31064853 -153223809 - MIR SINE MIR -37 225 11 1247 281 54 20 chr4 31064905 31065346 -153223316 + LTR68 LTR ERV1 1 456 -284 2173 110 0 0 chr4 31065448 31065740 -153222922 + AluSp SINE Alu 21 312 -1 198 0 0 0 chr4 31066092 31066114 -153222548 + (A)n Simple_repeat Simple_repeat 1 22 0 2221 90 0 4 chr4 31066673 31066981 -153221681 + AluSq SINE Alu 5 311 0 323 193 0 0 chr4 31067039 31067096 -153221566 + MSTA LTR MaLR 321 377 -51 258 258 106 33 chr4 31067227 31067378 -153221284 - Charlie1 DNA MER1_type -297 2464 2303 285 75 0 0 chr4 31067537 31067577 -153221085 + (GA)n Simple_repeat Simple_repeat 1 40 0 350 280 34 34 chr4 31067615 31067733 -153220929 - L1ME3 LINE L1 -66 6096 5979 2786 186 59 9 chr4 31067736 31068263 -153220399 - MER68 LTR ERV1 0 562 10 345 230 72 86 chr4 31068268 31068312 -153220350 - L1ME3 LINE L1 -181 5981 5938 2259 94 10 3 chr4 31068312 31068609 -153220053 - AluSx SINE Alu -13 299 1 345 230 72 86 chr4 31068609 31068703 -153219959 - L1ME3 LINE L1 -224 5938 5845 468 285 159 14 chr4 31068814 31069028 -153219634 - MIR SINE MIR -3 259 15 1397 178 122 21 chr4 31069101 31069388 -153219274 + MLT1D LTR MaLR 3 318 -187 5274 129 1 9 chr4 31070098 31070896 -153217766 + L1PA14 LINE L1 5370 6161 0 2238 157 23 3 chr4 31070931 31071281 -153217381 - MLT1A1 LTR MaLR -8 357 1 911 147 0 0 chr4 31071452 31071581 -153217081 + THE1B LTR MaLR 85 213 -151 246 184 20 0 chr4 31071681 31071730 -153216932 - MER53 DNA DNA -137 52 3 236 333 120 40 chr4 31071731 31071881 -153216781 - MIR SINE MIR -78 184 23 2043 151 0 3 chr4 31072808 31073182 -153215480 + AluSq SINE Alu 1 373 0 467 206 50 35 chr4 31073233 31073374 -153215288 - L1ME4a LINE L1 0 6121 5979 406 249 103 47 chr4 31073407 31073620 -153215042 - L1ME4a LINE L1 -207 5914 5690 1392 169 122 21 chr4 31073868 31074147 -153214515 + AluJo SINE Alu 1 307 -5 262 150 0 0 chr4 31074440 31074480 -153214182 + MER53 DNA DNA 150 189 0 2207 90 3 30 chr4 31075708 31076009 -153212653 + AluSp SINE Alu 1 293 -20 418 324 125 18 chr4 31076012 31076339 -153212323 + L1M4 LINE L1 4414 4775 -1371 805 105 19 0 chr4 31076339 31076444 -153212218 + AluJb SINE Alu 195 301 -11 186 361 48 0 chr4 31076653 31076736 -153211926 - L2 LINE L2 -43 3229 3143 302 186 51 0 chr4 31076962 31077021 -153211641 - Charlie1a DNA MER1_type 0 1455 1394 3575 215 40 6 chr4 31077021 31077864 -153210798 + L1M4 LINE L1 4309 5180 -966 251 237 26 0 chr4 31077965 31078041 -153210621 + (CATATA)n Simple_repeat Simple_repeat 3 80 0 255 287 0 43 chr4 31078044 31078138 -153210524 - L1MC4 LINE L1 -1339 6703 6614 232 344 0 0 chr4 31078084 31078174 -153210488 + L1MC4 LINE L1 6614 6703 -1339 * 237 188 0 0 chr4 31078178 31078226 -153210436 - LTR66 LTR ERVL -171 439 392 * 4243 204 39 48 chr4 31078223 31078246 -153210416 - Charlie1a DNA MER1_type -1694 1067 1045 1756 171 3 19 chr4 31078246 31078555 -153210107 - AluJb SINE Alu -8 304 1 4243 204 39 48 chr4 31078555 31079130 -153209532 - Charlie1a DNA MER1_type -1716 1045 479 2236 77 0 11 chr4 31079130 31079417 -153209245 - AluSp SINE Alu -23 290 7 4243 204 39 48 chr4 31079417 31079882 -153208780 - Charlie1a DNA MER1_type -2282 479 12 2435 68 3 3 chr4 31079891 31080202 -153208460 - AluY SINE Alu 0 311 1 325 274 7 67 chr4 31080219 31080354 -153208308 + L2 LINE L2 3183 3309 -4 1472 146 54 44 chr4 31080945 31081240 -153207422 + AluJo SINE Alu 1 298 -14 244 135 0 0 chr4 31081969 31082006 -153206656 - L2 LINE L2 -16 3297 3261 922 188 17 153 chr4 31082174 31082526 -153206136 - LTR37A LTR ERV1 -12 414 111 689 238 92 0 chr4 31082927 31083091 -153205571 + MIR SINE MIR 81 259 -3 2237 93 10 0 chr4 31083236 31083526 -153205136 - AluSc SINE Alu -16 293 1 841 96 0 0 chr4 31083757 31083861 -153204801 - AluSg/x SINE Alu -16 293 190 252 135 0 0 chr4 31083892 31083929 -153204733 + MER21A LTR ERV1 162 198 -733 * 2478 180 102 118 chr4 31083905 31084698 -153203964 + MER21A LTR ERV1 131 910 -21 1165 336 43 12 chr4 31084745 31085334 -153203328 - L2 LINE L2 -312 3001 2392 712 144 0 0 chr4 31085340 31085437 -153203225 + FLAM_C SINE Alu 22 118 -25 583 212 15 17 chr4 31085451 31085801 -153202861 + GA-rich Low_complexity Low_complexity 1 349 0 186 43 0 0 chr4 31085806 31085829 -153202833 + (GGGA)n Simple_repeat Simple_repeat 2 24 0 2133 145 0 0 chr4 31086977 31087287 -153201375 - AluSg SINE Alu 0 310 1 2167 115 0 0 chr4 31087292 31087588 -153201074 - AluSx SINE Alu -16 296 1 25 51 0 0 chr4 31087597 31087636 -153201026 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr4 31087752 31087773 -153200889 + AT_rich Low_complexity Low_complexity 1 21 0 1724 145 13 46 chr4 31088203 31088507 -153200155 + AluJo SINE Alu 3 296 -16 651 284 97 1 chr4 31088575 31088789 -153199873 - MIR SINE MIR -26 236 2 225 293 13 27 chr4 31088789 31088864 -153199798 - L2 LINE L2 -44 3269 3196 24 32 0 0 chr4 31088864 31088895 -153199767 + AT_rich Low_complexity Low_complexity 1 31 0 274 247 129 0 chr4 31089016 31089109 -153199553 - L1ME LINE L1 -322 5799 5695 189 0 0 0 chr4 31089122 31089143 -153199519 + (T)n Simple_repeat Simple_repeat 1 21 0 201 135 81 0 chr4 31090006 31090043 -153198619 - L2 LINE L2 -1 3312 3273 1986 92 38 89 chr4 31090305 31090620 -153198042 - AluSx SINE Alu -13 299 1 306 50 0 0 chr4 31090755 31090795 -153197867 + (TG)n Simple_repeat Simple_repeat 2 41 0 1066 169 47 67 chr4 31091812 31092066 -153196596 - Tigger3(Golem) DNA MER2_type -2780 249 1 2303 98 0 7 chr4 31092438 31092743 -153195919 + AluSx SINE Alu 1 303 -9 1211 136 0 0 chr4 31092743 31092920 -153195742 + AluSg/x SINE Alu 134 310 -2 1568 165 90 97 chr4 31092922 31093376 -153195286 - MER31B LTR ERV1 -15 451 1 2251 110 0 3 chr4 31093570 31093871 -153194791 + AluSx SINE Alu 1 300 -12 2128 120 47 0 chr4 31094487 31094786 -153193876 + AluSq SINE Alu 1 313 0 207 0 0 0 chr4 31094902 31094925 -153193737 + (A)n Simple_repeat Simple_repeat 1 23 0 998 215 0 5 chr4 31094940 31095140 -153193522 + MIR SINE MIR 57 255 -7 351 78 0 0 chr4 31095857 31095908 -153192754 + (TG)n Simple_repeat Simple_repeat 1 51 0 1625 184 0 35 chr4 31097622 31097938 -153190724 + AluJo SINE Alu 1 305 -7 189 0 0 0 chr4 31097944 31097965 -153190697 + (TG)n Simple_repeat Simple_repeat 2 22 0 324 48 0 0 chr4 31097967 31098009 -153190653 + (GA)n Simple_repeat Simple_repeat 1 42 0 2298 82 14 0 chr4 31098336 31098630 -153190032 - AluSp SINE Alu -15 298 1 2256 156 22 27 chr4 31098630 31098873 -153189789 - L1MB4 LINE L1 -118 6062 5820 2186 123 3 3 chr4 31098873 31099175 -153189487 - AluSx SINE Alu -9 303 2 2256 156 22 27 chr4 31099175 31099341 -153189321 - L1MB4 LINE L1 -360 5820 5655 291 274 39 0 chr4 31099347 31099449 -153189213 - L1MC4a LINE L1 -1922 5886 5781 1917 134 23 10 chr4 31099898 31100197 -153188465 + AluSx SINE Alu 1 303 -9 1710 108 0 0 chr4 31100198 31100420 -153188242 + AluSg/x SINE Alu 89 310 -2 793 160 26 39 chr4 31100625 31100781 -153187881 - L1PB4 LINE L1 -1 6155 6002 1520 197 34 3 chr4 31100858 31101152 -153187510 + AluJb SINE Alu 1 303 -9 230 193 18 18 chr4 31101747 31101804 -153186858 + A-rich Low_complexity Low_complexity 3 59 0 2460 29 0 0 chr4 31101848 31102126 -153186536 - AluYa5 SINE Alu -4 307 30 1843 157 16 23 chr4 31102844 31103149 -153185513 - AluJo SINE Alu -4 308 6 183 354 0 31 chr4 31103368 31103464 -153185198 + L2 LINE L2 2791 2883 -431 1009 167 34 12 chr4 31103481 31103680 -153184982 + L1MA9 LINE L1 5592 5793 -519 2110 114 0 3 chr4 31103784 31104074 -153184588 + AluSx SINE Alu 1 289 -23 2913 168 12 8 chr4 31104079 31104591 -153184071 + L1MA9 LINE L1 5799 6312 0 2191 115 3 0 chr4 31104629 31104924 -153183738 + AluSx SINE Alu 1 296 -16 1600 161 67 30 chr4 31106158 31106457 -153182205 - AluJo SINE Alu -2 310 1 1395 210 40 0 chr4 31107074 31107406 -153181256 - AluSx SINE Alu 0 344 1 21 0 0 0 chr4 31107479 31107500 -153181162 + AT_rich Low_complexity Low_complexity 1 21 0 878 138 0 7 chr4 31107613 31107765 -153180897 + (TCCC)n Simple_repeat Simple_repeat 4 154 0 1365 61 0 0 chr4 31108553 31108733 -153179929 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 433 147 20 98 chr4 31109397 31109499 -153179163 - L1MB7 LINE L1 -20 6164 6071 439 273 29 14 chr4 31109515 31109654 -153179008 - L2 LINE L2 -19 3294 3154 2183 168 144 7 chr4 31109661 31110072 -153178590 + MLT1C LTR MaLR 1 467 0 597 171 21 50 chr4 31110195 31110335 -153178327 + MER21A LTR ERV1 8 143 -788 362 123 31 0 chr4 31110447 31110512 -153178150 + G-rich Low_complexity Low_complexity 5 71 0 711 105 24 0 chr4 31110518 31110642 -153178020 + GA-rich Low_complexity Low_complexity 4 130 0 230 287 157 0 chr4 31110656 31110771 -153177891 + MER5A DNA MER1_type 54 186 -3 478 164 86 86 chr4 31110847 31110987 -153177675 - LTR48 LTR ERV1 -3 784 645 1209 140 16 5 chr4 31111005 31111198 -153177464 + MER44D DNA MER2_type 8 472 -137 828 168 0 22 chr4 31111198 31111335 -153177327 - FLAM_A SINE Alu -8 134 1 807 159 29 7 chr4 31111335 31111473 -153177189 + MER44D DNA MER2_type 465 605 0 556 223 90 32 chr4 31111473 31111777 -153176885 - LTR48B LTR ERV1 -141 616 128 349 307 9 26 chr4 31111750 31111864 -153176798 - MER34 LTR ERV1 -430 112 1 * 1658 165 18 32 chr4 31112415 31112700 -153175962 + AluJo SINE Alu 1 281 -31 183 27 54 27 chr4 31112708 31112745 -153175917 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 593 264 120 57 chr4 31114106 31114405 -153174257 + L2 LINE L2 2996 3313 0 1479 198 3 23 chr4 31114476 31114784 -153173878 + AluJo SINE Alu 1 302 -10 1901 147 6 10 chr4 31114784 31115097 -153173565 + AluSx SINE Alu 1 312 0 434 242 21 0 chr4 31115230 31115325 -153173337 - MIR SINE MIR -108 154 58 274 352 0 0 chr4 31115417 31115532 -153173130 + MIR SINE MIR 41 155 -53 690 95 11 0 chr4 31115749 31115868 -153172794 - AluSc SINE Alu 0 305 186 417 316 91 34 chr4 31115978 31116246 -153172416 + L2 LINE L2 2766 3047 -266 1520 174 10 35 chr4 31116401 31116712 -153171950 - AluSx SINE Alu -9 303 1 2662 20 0 0 chr4 31116833 31117137 -153171525 + AluY SINE Alu 1 304 -7 2545 52 0 0 chr4 31117231 31117541 -153171121 + AluY SINE Alu 1 310 -1 407 274 85 26 chr4 31117548 31117701 -153170961 + MIR3 SINE MIR 47 208 0 357 276 122 32 chr4 31118487 31118658 -153170004 - MIR3 SINE MIR -62 146 6 334 327 50 0 chr4 31118801 31118902 -153169760 - MIR SINE MIR 0 262 157 450 237 64 32 chr4 31118902 31119058 -153169604 - MIR SINE MIR 0 262 102 2027 126 3 0 chr4 31119059 31119352 -153169310 + AluSp SINE Alu 2 295 -18 7161 136 20 10 chr4 31120272 31120493 -153168169 - HSMAR2 DNA Mariner 0 1302 1085 2044 100 4 4 chr4 31120493 31120808 -153167854 - AluSc SINE Alu 0 315 1 7161 136 20 10 chr4 31120808 31121707 -153166955 - HSMAR2 DNA Mariner -217 1085 170 1271 135 42 9 chr4 31122063 31122278 -153166384 - AluJo SINE Alu -4 308 87 808 206 56 6 chr4 31123018 31123198 -153165464 - MER53 DNA DNA 0 189 1 278 177 0 16 chr4 31123529 31123591 -153165071 + CT-rich Low_complexity Low_complexity 3 63 0 276 256 70 12 chr4 31124654 31124740 -153163922 + MIR SINE MIR 6 96 -166 444 274 30 42 chr4 31124753 31124921 -153163741 - MIR SINE MIR -1 261 96 1918 162 0 0 chr4 31124925 31125228 -153163434 + AluJb SINE Alu 1 303 -9 672 214 0 36 chr4 31125270 31125410 -153163252 + FLAM_C SINE Alu 2 136 -7 212 324 27 0 chr4 31125410 31125484 -153163178 - MIR SINE MIR -168 94 19 387 297 21 59 chr4 31125516 31125673 -153162989 - MIR SINE MIR -66 142 38 356 211 32 42 chr4 31125825 31125920 -153162742 + MER103 DNA DNA 67 160 -6 277 61 0 0 chr4 31126079 31126112 -153162550 - AluY SINE Alu -210 91 59 186 312 182 0 chr4 31126427 31126504 -153162158 - MIR SINE MIR 0 262 172 1907 199 111 11 chr4 31126535 31126978 -153161684 + MLT1F LTR MaLR 56 542 0 362 190 0 38 chr4 31126978 31127057 -153161605 - MIR SINE MIR -103 159 84 230 209 0 0 chr4 31127690 31127733 -153160929 - MIR SINE MIR -116 92 50 813 284 16 73 chr4 31127897 31128054 -153160608 - L2 LINE L2 -5 3308 3144 2189 78 4 0 chr4 31128054 31128369 -153160293 + AluSx SINE Alu 1 316 0 813 284 16 73 chr4 31128369 31128580 -153160082 - L2 LINE L2 -169 3144 2960 184 347 14 0 chr4 31130026 31130098 -153158564 + MIR SINE MIR 82 154 -108 368 289 102 16 chr4 31130165 31130293 -153158369 - MIR SINE MIR -55 207 69 221 139 0 0 chr4 31130351 31130387 -153158275 + MIR SINE MIR 226 261 -1 191 203 17 0 chr4 31130693 31130752 -153157910 + (TA)n Simple_repeat Simple_repeat 1 60 0 362 255 21 32 chr4 31130760 31130854 -153157808 - L1MC4 LINE L1 -1336 6706 6614 315 311 0 11 chr4 31130780 31130870 -153157792 + L1MC4 LINE L1 6615 6703 -1339 * 252 0 0 0 chr4 31130971 31130999 -153157663 + (T)n Simple_repeat Simple_repeat 1 28 0 1274 266 120 12 chr4 31131153 31132004 -153156658 - L2 LINE L2 -3 3310 2356 306 50 0 0 chr4 31132255 31132295 -153156367 + (CA)n Simple_repeat Simple_repeat 2 41 0 207 0 0 0 chr4 31132784 31132807 -153155855 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2305 63 7 3 chr4 31132862 31133162 -153155500 + AluY SINE Alu 2 302 -9 265 240 10 19 chr4 31133532 31133636 -153155026 + (CCCCG)n Simple_repeat Simple_repeat 1 103 0 206 311 40 0 chr4 31134582 31134656 -153154006 + L2 LINE L2 3195 3271 -1 244 252 0 37 chr4 31135295 31135455 -153153207 + (CGG)n Simple_repeat Simple_repeat 1 154 0 23 0 0 0 chr4 31136228 31136251 -153152411 + GC_rich Low_complexity Low_complexity 1 23 0 202 208 42 0 chr4 31136778 31136826 -153151836 + (TA)n Simple_repeat Simple_repeat 1 50 0 2407 53 0 0 chr4 31137452 31137753 -153150909 + AluY SINE Alu 1 301 -10 23 0 0 0 chr4 31137781 31137804 -153150858 + AT_rich Low_complexity Low_complexity 1 23 0 332 255 10 39 chr4 31138015 31138117 -153150545 + MIR SINE MIR 59 157 -105 503 271 0 23 chr4 31138304 31138433 -153150229 + L2 LINE L2 3188 3313 0 581 273 70 66 chr4 31138692 31138759 -153149903 + MIR SINE MIR 1 66 -196 2195 94 0 22 chr4 31138759 31139077 -153149585 + AluY SINE Alu 1 311 0 581 273 70 66 chr4 31139077 31139251 -153149411 + MIR SINE MIR 66 243 -19 282 292 62 22 chr4 31139302 31139410 -153149252 - MIR SINE MIR -82 126 15 204 238 0 0 chr4 31140225 31140267 -153148395 + (CAA)n Simple_repeat Simple_repeat 3 44 0 185 268 188 27 chr4 31140668 31140780 -153147882 - MIR3 SINE MIR -50 158 29 189 265 29 44 chr4 31140906 31140974 -153147688 - L2 LINE L2 -10 3262 3196 374 294 51 89 chr4 31141729 31141915 -153146747 + L2 LINE L2 2550 2721 -593 1654 167 0 34 chr4 31141915 31142208 -153146454 - AluJb SINE Alu -29 283 1 374 294 51 89 chr4 31142208 31142337 -153146325 + L2 LINE L2 2721 2853 -461 1115 231 113 54 chr4 31142508 31142949 -153145713 + MLT1C LTR MaLR 1 467 0 353 338 78 22 chr4 31143986 31144354 -153144308 + L2 LINE L2 2638 3020 -252 412 249 333 34 chr4 31144710 31144887 -153143775 - MIR SINE MIR -1 261 32 261 283 66 66 chr4 31144956 31145062 -153143600 + L2 LINE L2 3075 3180 -92 1384 156 9 4 chr4 31145398 31145623 -153143039 + AluJo SINE Alu 1 226 -86 427 173 74 0 chr4 31145632 31145713 -153142949 + L1MB8 LINE L1 5739 5825 -353 422 138 0 0 chr4 31145713 31145771 -153142891 + AluJo SINE Alu 228 285 -27 2256 97 0 3 chr4 31145894 31146203 -153142459 - AluSg SINE Alu -2 308 1 214 29 57 0 chr4 31146301 31146336 -153142326 + (GA)n Simple_repeat Simple_repeat 2 38 0 2187 204 5 7 chr4 31146384 31146815 -153141847 + L1MB8 LINE L1 5638 6067 -111 208 333 208 24 chr4 31146818 31146986 -153141676 - MIR SINE MIR -61 201 3 205 62 0 31 chr4 31147607 31147639 -153141023 + MIR SINE MIR 124 154 -108 270 160 0 0 chr4 31148107 31148157 -153140505 + G-rich Low_complexity Low_complexity 5 54 0 209 351 0 43 chr4 31148186 31148280 -153140382 - MIR SINE MIR -13 249 160 2350 61 13 16 chr4 31148280 31148593 -153140069 + AluSp SINE Alu 1 312 -1 476 221 179 7 chr4 31148608 31148753 -153139909 + L2 LINE L2 3131 3300 -13 855 266 60 20 chr4 31148820 31149072 -153139590 - MIR SINE MIR 0 262 1 1008 121 33 22 chr4 31149201 31149383 -153139279 - L1MB3 LINE L1 -1 6182 5999 1490 106 46 0 chr4 31149465 31149682 -153138980 + AluY SINE Alu 1 227 -84 721 155 0 45 chr4 31150024 31150179 -153138483 + L1MB8 LINE L1 6029 6176 -2 439 221 145 23 chr4 31150555 31150686 -153137976 - MIR SINE MIR -74 188 42 1487 186 41 14 chr4 31150688 31150983 -153137679 + AluJb SINE Alu 1 303 -9 249 338 35 95 chr4 31151052 31151283 -153137379 + L2 LINE L2 3006 3222 -50 210 37 0 0 chr4 31151306 31151333 -153137329 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 951 291 85 6 chr4 31152208 31152548 -153136114 + L2 LINE L2 1888 2254 -1060 424 196 28 56 chr4 31152553 31152660 -153136002 - L2 LINE L2 -777 2537 2434 368 191 43 21 chr4 31152674 31152768 -153135894 + L2 LINE L2 2291 2386 -928 1681 154 13 31 chr4 31152874 31153192 -153135470 + AluSx SINE Alu 1 312 0 503 141 11 0 chr4 31153192 31153284 -153135378 + GA-rich Low_complexity Low_complexity 4 96 0 902 316 73 30 chr4 31153294 31153885 -153134777 + L2 LINE L2 2552 3313 0 246 341 11 11 chr4 31154096 31154187 -153134475 + MIR SINE MIR 33 123 -85 1846 118 14 21 chr4 31154212 31154492 -153134170 - AluJb SINE Alu -34 278 1 407 289 102 0 chr4 31154946 31155074 -153133588 + MIR SINE MIR 112 252 -10 329 132 264 28 chr4 31155738 31155835 -153132827 + AluJo/FLAM SINE Alu 2 127 -175 2034 149 0 0 chr4 31155835 31156137 -153132525 - AluSx SINE Alu -10 302 1 402 309 7 22 chr4 31157825 31157964 -153130698 - L2 LINE L2 -13 3300 3164 291 355 90 19 chr4 31158190 31158345 -153130317 - MIR SINE MIR -48 214 49 797 262 9 36 chr4 31158349 31158570 -153130092 - MIR SINE MIR 0 262 48 192 274 85 92 chr4 31159026 31159179 -153129483 + L2 LINE L2 3121 3272 0 318 236 79 63 chr4 31159295 31159422 -153129240 + MER63 DNA MER1_type 6 760 -76 253 306 14 0 chr4 31159420 31159492 -153129170 + MER63 DNA MER1_type 984 1056 -5 * 384 169 0 0 chr4 31159780 31159857 -153128805 + CT-rich Low_complexity Low_complexity 2 78 0 1300 112 6 0 chr4 31159958 31160136 -153128526 - AluSc SINE Alu -130 179 1 1934 135 10 0 chr4 31160657 31160954 -153127708 - AluSx SINE Alu -8 304 5 2281 98 0 0 chr4 31161051 31161347 -153127315 - AluSg SINE Alu -14 296 1 364 194 0 0 chr4 31161531 31161603 -153127059 - MLT1F1 LTR MaLR -4 563 492 234 0 0 0 chr4 31161872 31161898 -153126764 + (A)n Simple_repeat Simple_repeat 1 26 0 877 130 80 31 chr4 31162100 31162262 -153126400 + AluJo SINE Alu 79 248 -64 349 175 0 16 chr4 31162262 31162325 -153126337 + AluJo SINE Alu 225 286 -16 1532 176 26 7 chr4 31162415 31162721 -153125941 + AluJo SINE Alu 1 312 0 1243 132 5 5 chr4 31163007 31163212 -153125450 - AluSg/x SINE Alu -13 299 95 694 120 8 32 chr4 31163313 31163438 -153125224 - HSMAR2 DNA Mariner -1173 129 8 191 275 0 0 chr4 31164344 31164384 -153124278 - MIR SINE MIR -109 153 114 1954 159 3 13 chr4 31165202 31165517 -153123145 - AluJb SINE Alu 0 312 1 739 210 0 0 chr4 31165522 31165646 -153123016 - FLAM_A SINE Alu -9 124 1 463 347 88 37 chr4 31165755 31166302 -153122360 + L2 LINE L2 2009 2583 -731 577 230 34 27 chr4 31166599 31166747 -153121915 - MLT1J1 LTR MaLR -297 149 1 226 246 0 18 chr4 31166778 31166835 -153121827 + L2 LINE L2 3160 3215 -98 2169 120 0 0 chr4 31166843 31167142 -153121520 - AluSg SINE Alu -11 299 1 2157 103 3 29 chr4 31167142 31167454 -153121208 - AluSx SINE Alu -7 305 2 231 164 58 67 chr4 31167513 31167617 -153121045 + (TTAA)n Simple_repeat Simple_repeat 3 105 0 267 323 121 0 chr4 31167628 31167727 -153120935 + L2 LINE L2 2594 2704 -610 3099 179 116 26 chr4 31168103 31168519 -153120143 - LTR48 LTR ERV1 0 787 410 1972 127 48 0 chr4 31168519 31168810 -153119852 + AluSx SINE Alu 1 305 -7 3099 179 116 26 chr4 31168810 31169029 -153119633 - LTR48 LTR ERV1 -377 410 212 1994 122 21 3 chr4 31169029 31169315 -153119347 + AluSg SINE Alu 1 291 -19 3099 179 116 26 chr4 31169315 31169400 -153119262 - LTR48 LTR ERV1 -575 212 1 1117 195 49 95 chr4 31169546 31169935 -153118727 - MER39 LTR ERV1 -66 641 271 305 241 56 19 chr4 31169911 31170019 -153118643 - LTR29 LTR ERV1 -507 115 4 * 228 260 41 0 chr4 31170804 31170877 -153117785 + LTR66 LTR ERVL 369 444 -166 2198 96 14 0 chr4 31170879 31171180 -153117482 - AluSx SINE Alu 0 305 1 2104 114 0 0 chr4 31172480 31172827 -153115835 - AluSx SINE Alu 0 348 2 237 277 143 18 chr4 31172885 31172997 -153115665 + L2 LINE L2 3138 3263 -9 1813 149 4 7 chr4 31173272 31173553 -153115109 + AluSx SINE Alu 1 280 -32 1387 80 0 6 chr4 31173693 31173868 -153114794 + L1PA11 LINE L1 6000 6173 -1 2169 129 0 13 chr4 31173908 31174218 -153114444 + AluSx SINE Alu 5 310 -2 27 0 0 0 chr4 31174218 31174245 -153114417 + AT_rich Low_complexity Low_complexity 1 27 0 1051 105 0 0 chr4 31174251 31174384 -153114278 + AluSq/x SINE Alu 1 133 -180 2410 84 0 0 chr4 31174388 31174685 -153113977 + AluSq SINE Alu 1 297 -16 918 216 26 56 chr4 31175477 31175746 -153112916 + MIR SINE MIR 2 262 0 309 115 19 0 chr4 31175835 31175887 -153112775 - L1M4 LINE L1 -441 5743 5691 1854 174 0 3 chr4 31175896 31176194 -153112468 - AluJb SINE Alu -15 297 1 230 313 0 73 chr4 31176230 31176326 -153112336 + MIR SINE MIR 5 93 -169 407 251 147 43 chr4 31176355 31176518 -153112144 - MIR SINE MIR -81 181 2 233 200 0 0 chr4 31177704 31177749 -153110913 + (TG)n Simple_repeat Simple_repeat 2 46 0 478 256 194 14 chr4 31178629 31178840 -153109822 - MIR SINE MIR 0 262 14 207 206 79 48 chr4 31179517 31179580 -153109082 + MIR3 SINE MIR 115 179 -29 1556 205 0 33 chr4 31179611 31179918 -153108744 - AluJo SINE Alu -15 297 1 2215 125 6 3 chr4 31179924 31180235 -153108427 - AluSx SINE Alu 0 312 1 2869 149 46 8 chr4 31180315 31180812 -153107850 - L1MC2 LINE L1 0 6344 5829 191 308 19 0 chr4 31181339 31181391 -153107271 - L2 LINE L2 -3 3269 3217 855 104 0 0 chr4 31181443 31181558 -153107104 + AluSx SINE Alu 1 115 -198 773 47 0 28 chr4 31181566 31181673 -153106989 + MER11A LTR ERVK 1163 1266 0 1367 111 0 32 chr4 31181673 31181863 -153106799 + AluSx SINE Alu 109 292 -20 589 213 124 45 chr4 31182023 31182225 -153106437 - MIR SINE MIR -3 259 42 288 329 126 35 chr4 31182477 31182708 -153105954 + L2 LINE L2 2840 3091 -181 2360 90 0 3 chr4 31182924 31183225 -153105437 - AluSg SINE Alu -10 300 1 204 179 0 0 chr4 31183360 31183399 -153105263 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 261 0 0 0 chr4 31183440 31183469 -153105193 + (TA)n Simple_repeat Simple_repeat 1 29 0 530 208 0 0 chr4 31183476 31183582 -153105080 - L1MA4 LINE L1 -16 6284 6179 2348 94 0 3 chr4 31183582 31183891 -153104771 - AluSx SINE Alu -4 308 1 555 198 45 0 chr4 31184259 31184370 -153104292 - L1MA4 LINE L1 -113 6187 6072 272 218 18 82 chr4 31185317 31185427 -153103235 + MIR SINE MIR 77 179 -83 287 24 0 24 chr4 31185693 31185734 -153102928 + (TG)n Simple_repeat Simple_repeat 1 40 0 2056 141 7 0 chr4 31185832 31186136 -153102526 - AluSx SINE Alu -6 306 1 324 348 124 11 chr4 31186432 31186699 -153101963 + L2 LINE L2 2460 2756 -558 569 248 94 35 chr4 31186768 31186970 -153101692 + MIR SINE MIR 48 261 -1 249 292 0 71 chr4 31187885 31187998 -153100664 + MIR SINE MIR 92 196 -66 216 0 0 0 chr4 31188850 31188874 -153099788 + (T)n Simple_repeat Simple_repeat 1 24 0 920 176 0 0 chr4 31189012 31189160 -153099502 + FRAM SINE Alu 8 155 -21 21 36 0 0 chr4 31189601 31189629 -153099033 + AT_rich Low_complexity Low_complexity 1 28 0 1167 150 25 101 chr4 31189945 31190231 -153098431 - AluJo SINE Alu -23 289 26 2143 110 13 0 chr4 31190298 31190598 -153098064 - AluSp SINE Alu -8 305 2 273 254 103 55 chr4 31190800 31190919 -153097743 + MIR SINE MIR 84 215 -47 2586 50 0 0 chr4 31190919 31191219 -153097443 + AluY SINE Alu 1 300 -11 273 254 103 55 chr4 31191219 31191264 -153097398 + MIR SINE MIR 215 256 -6 210 315 0 63 chr4 31192259 31192370 -153096292 - MIR3 SINE MIR -6 202 99 1392 199 63 0 chr4 31192419 31192690 -153095972 - AluJb SINE Alu -20 292 5 1637 187 14 7 chr4 31193961 31194255 -153094407 - AluJo SINE Alu -16 296 1 1101 187 153 0 chr4 31194341 31194544 -153094118 - MER8 DNA MER2_type -3 236 3 26 64 0 0 chr4 31194821 31194868 -153093794 + AT_rich Low_complexity Low_complexity 1 47 0 653 244 0 8 chr4 31194868 31194995 -153093667 - FLAM_A SINE Alu -7 126 1 1606 171 84 0 chr4 31194999 31195273 -153093389 - AluJb SINE Alu -15 297 1 2117 127 7 3 chr4 31195349 31195649 -153093013 - AluSx SINE Alu -11 301 1 329 285 113 26 chr4 31195741 31195892 -153092770 + MIR SINE MIR 81 244 -18 2310 88 3 7 chr4 31196479 31196787 -153091875 - AluSc SINE Alu -2 307 1 2238 91 0 13 chr4 31196922 31197229 -153091433 - AluY SINE Alu -7 304 2 274 208 0 0 chr4 31197660 31197708 -153090954 + FRAM/FAM SINE Alu 20 67 -108 1123 166 128 34 chr4 31197718 31197792 -153090870 + AluJo SINE Alu 42 108 -204 288 0 0 0 chr4 31197792 31197824 -153090838 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1123 166 128 34 chr4 31197824 31197984 -153090678 + AluJo SINE Alu 108 298 -14 1835 113 46 30 chr4 31198281 31198583 -153090079 - AluSx SINE Alu -5 307 1 1235 180 0 9 chr4 31198996 31199213 -153089449 - AluJo SINE Alu -12 300 86 2470 88 0 0 chr4 31199458 31199765 -153088897 - AluSc SINE Alu -2 307 1 2131 107 0 0 chr4 31199889 31200169 -153088493 - AluSg1 SINE Alu -14 295 16 1227 155 50 5 chr4 31200213 31200432 -153088230 - AluJb SINE Alu -83 229 1 1055 287 118 20 chr4 31200733 31201189 -153087473 + Charlie2a DNA MER1_type 181 681 -2181 260 196 20 0 chr4 31201200 31201251 -153087411 + MIR SINE MIR 211 262 0 640 195 205 68 chr4 31201388 31201616 -153087046 + Charlie2a DNA MER1_type 693 888 -1974 2163 135 0 0 chr4 31201616 31201919 -153086743 - AluSx SINE Alu -9 303 1 640 195 205 68 chr4 31201919 31202075 -153086587 + Charlie2a DNA MER1_type 888 1130 -1732 824 208 19 0 chr4 31202078 31202237 -153086425 - AluJo SINE Alu -30 282 121 2579 206 147 6 chr4 31202267 31203059 -153085603 + Charlie2a DNA MER1_type 1195 2097 -765 240 35 0 0 chr4 31203060 31203089 -153085573 + (TG)n Simple_repeat Simple_repeat 1 29 0 974 158 0 0 chr4 31203089 31203235 -153085427 - AluSg/x SINE Alu -33 279 134 2183 125 3 10 chr4 31203235 31203546 -153085116 - AluSg SINE Alu 0 310 2 373 302 148 45 chr4 31203546 31203604 -153085058 + L1MC/D LINE L1 5515 5566 -2242 2452 138 97 3 chr4 31203604 31203995 -153084667 - MSTA LTR MaLR 0 428 1 373 302 148 45 chr4 31203995 31204138 -153084524 + L1MC/D LINE L1 5566 5737 -2071 1276 181 0 0 chr4 31204553 31204774 -153083888 - AluSq SINE Alu -8 305 85 926 137 0 0 chr4 31204774 31204905 -153083757 - AluY SINE Alu -62 249 119 565 247 53 7 chr4 31205029 31205179 -153083483 + MIR SINE MIR 74 230 -32 2304 96 0 7 chr4 31205293 31205596 -153083066 + AluSx SINE Alu 1 301 -11 398 255 235 0 chr4 31206676 31206825 -153081837 + MIR SINE MIR 66 249 -13 245 272 68 19 chr4 31206827 31206930 -153081732 + MIR SINE MIR 90 197 -65 1775 133 65 4 chr4 31206949 31207228 -153081434 + AluJo SINE Alu 5 300 -12 22 35 0 0 chr4 31207739 31207768 -153080894 + AT_rich Low_complexity Low_complexity 1 29 0 2358 65 0 0 chr4 31207974 31208267 -153080395 - AluY SINE Alu -18 293 1 244 232 139 46 chr4 31209014 31209165 -153079497 - MIR SINE MIR -28 234 70 27 0 0 0 chr4 31209208 31209235 -153079427 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr4 31209273 31209301 -153079361 + AT_rich Low_complexity Low_complexity 1 28 0 45 19 0 0 chr4 31209350 31209402 -153079260 + AT_rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr4 31209488 31209510 -153079152 + AT_rich Low_complexity Low_complexity 1 22 0 2139 100 7 0 chr4 31209513 31209832 -153078830 + AluY SINE Alu 1 321 0 5750 185 53 34 chr4 31209845 31210188 -153078474 + L1MB8 LINE L1 3686 4021 -2157 2205 121 0 19 chr4 31210188 31210503 -153078159 + AluSq SINE Alu 3 311 -2 5750 185 53 34 chr4 31210503 31212402 -153076260 + L1MB8 LINE L1 4021 6174 -4 881 87 0 9 chr4 31212485 31212600 -153076062 - FLAM_C SINE Alu -25 118 5 731 197 162 0 chr4 31212798 31212940 -153075722 - FRAM SINE Alu -1 165 1 216 119 34 34 chr4 31212951 31213010 -153075652 + (TA)n Simple_repeat Simple_repeat 2 60 0 389 66 16 0 chr4 31213020 31213081 -153075581 + (TTTA)n Simple_repeat Simple_repeat 2 63 0 1763 179 0 0 chr4 31213084 31213364 -153075298 - AluSx SINE Alu -32 280 1 338 287 114 34 chr4 31213434 31213671 -153074991 - MIR SINE MIR 0 262 7 2641 50 0 0 chr4 31214353 31214655 -153074007 - AluY SINE Alu -9 302 1 274 163 20 0 chr4 31214621 31214670 -153073992 - AluSg/x SINE Alu -133 169 120 309 252 158 0 chr4 31214761 31214888 -153073774 + MIR SINE MIR 89 235 -27 290 259 119 75 chr4 31215154 31215355 -153073307 - L2 LINE L2 0 3313 3104 277 290 37 19 chr4 31215736 31215843 -153072819 - MIR SINE MIR -88 174 66 2184 81 26 39 chr4 31215981 31216289 -153072373 + AluSq SINE Alu 1 304 -9 207 200 0 0 chr4 31218113 31218158 -153070504 + T-rich Low_complexity Low_complexity 1 45 0 192 152 0 0 chr4 31218232 31218265 -153070397 + T-rich Low_complexity Low_complexity 1 33 0 2030 120 43 3 chr4 31218713 31219013 -153069649 - AluSx SINE Alu 0 312 1 21 0 0 0 chr4 31219086 31219107 -153069555 + AT_rich Low_complexity Low_complexity 1 21 0 355 305 142 16 chr4 31219227 31219417 -153069245 + MIR SINE MIR 48 261 -1 2235 234 71 10 chr4 31219494 31220012 -153068650 + MLT1F1 LTR MaLR 14 563 -4 332 297 97 32 chr4 31220122 31220277 -153068385 - MIR3 SINE MIR -2 206 42 374 181 30 30 chr4 31220297 31220463 -153068199 + CT-rich Low_complexity Low_complexity 2 167 0 557 69 97 0 chr4 31220600 31220672 -153067990 - AluSg SINE Alu -230 80 2 1184 159 51 5 chr4 31220709 31220923 -153067739 - AluJb SINE Alu -83 229 6 268 325 13 0 chr4 31221081 31221158 -153067504 - MIR SINE MIR -103 105 28 2205 113 0 0 chr4 31221172 31221464 -153067198 + AluSx SINE Alu 14 305 -7 2183 104 3 0 chr4 31221553 31221840 -153066822 + AluSx SINE Alu 9 296 -16 421 305 170 9 chr4 31221846 31222361 -153066301 - L2 LINE L2 0 3313 2591 2427 87 0 3 chr4 31222385 31222695 -153065967 + AluSc SINE Alu 1 309 0 2042 251 169 20 chr4 31222706 31223140 -153065522 - L2 LINE L2 -910 2404 2036 1959 136 4 0 chr4 31223140 31223477 -153065185 + AluSx SINE Alu 1 338 0 2042 251 169 20 chr4 31223477 31223809 -153064853 - L2 LINE L2 -1278 2036 1508 1129 200 0 5 chr4 31223809 31223999 -153064663 - MER5A DNA MER1_type 0 189 1 2042 251 169 20 chr4 31223999 31224039 -153064623 - L2 LINE L2 -1806 1508 1475 235 324 27 0 chr4 31224177 31224251 -153064411 - MIR SINE MIR -103 105 30 1812 145 3 78 chr4 31225345 31225544 -153063118 - AluSx SINE Alu -5 307 141 2285 109 0 3 chr4 31225544 31225857 -153062805 - AluSq SINE Alu -1 312 1 1812 145 3 78 chr4 31225857 31225989 -153062673 - AluSx SINE Alu -171 141 1 2492 56 0 3 chr4 31226038 31226341 -153062321 - AluY SINE Alu -9 302 1 201 202 28 138 chr4 31226481 31226590 -153062072 - L2 LINE L2 -2793 521 425 23 54 0 0 chr4 31226776 31226813 -153061849 + AT_rich Low_complexity Low_complexity 1 37 0 3469 131 86 31 chr4 31227906 31228486 -153060176 - LTR9 LTR ERV1 0 612 1 2476 83 0 10 chr4 31228512 31228826 -153059836 + AluSx SINE Alu 1 311 -1 555 294 216 26 chr4 31228909 31229566 -153059096 - L2 LINE L2 -906 2408 1627 2294 108 3 9 chr4 31229754 31230069 -153058593 - AluSq SINE Alu 0 313 1 300 211 205 39 chr4 31230302 31230458 -153058204 - Charlie7 DNA MER1_type -5 2607 2426 1743 192 0 10 chr4 31230499 31230812 -153057850 - AluJo SINE Alu -2 310 1 1551 155 0 23 chr4 31230914 31231179 -153057483 - AluJo SINE Alu -53 259 1 426 199 20 73 chr4 31231195 31231346 -153057316 - Charlie7 DNA MER1_type -263 2349 2207 1293 244 133 20 chr4 31231367 31231817 -153056845 - Charlie7 DNA MER1_type -881 1731 1231 341 235 59 29 chr4 31231826 31231928 -153056734 + L2 LINE L2 3203 3307 -6 1203 247 88 38 chr4 31231928 31232373 -153056289 - Charlie7 DNA MER1_type -1381 1231 765 242 276 86 26 chr4 31232408 31232524 -153056138 - L2 LINE L2 -280 3033 2911 * 475 265 17 0 chr4 31232510 31232627 -153056035 - L2 LINE L2 -799 2515 2397 499 90 290 10 chr4 31232764 31232864 -153055798 + MER85 DNA T2_type 1 128 -11 21 0 0 0 chr4 31232875 31232896 -153055766 + AT_rich Low_complexity Low_complexity 1 21 0 1495 165 77 0 chr4 31233229 31233489 -153055173 - AluJb SINE Alu -32 280 1 1985 185 51 11 chr4 31233950 31234301 -153054361 - MLT1A1 LTR MaLR 0 365 1 804 135 0 5 chr4 31234327 31234529 -153054133 + AluSx SINE Alu 2 300 -12 471 279 76 6 chr4 31235178 31235350 -153053312 + MIR SINE MIR 32 215 -47 2188 99 7 16 chr4 31235415 31235719 -153052943 - AluSx SINE Alu -11 301 1 2530 51 0 6 chr4 31235725 31236038 -153052624 - AluY SINE Alu 0 311 1 1900 143 17 3 chr4 31236253 31236553 -153052109 - AluSx SINE Alu -8 304 1 596 194 42 141 chr4 31236863 31237054 -153051608 - AluJb SINE Alu -23 289 118 1300 181 92 8 chr4 31237181 31237441 -153051221 + AluJo SINE Alu 1 282 -30 518 279 111 17 chr4 31238372 31238679 -153049983 - L1MC4a LINE L1 -323 5798 5573 2487 145 54 2 chr4 31239358 31239785 -153048877 - L1MB3 LINE L1 -1 6182 5734 342 0 0 0 chr4 31239824 31239862 -153048800 + (TG)n Simple_repeat Simple_repeat 2 39 0 710 125 17 50 chr4 31290097 31290242 -152998420 + FLAM_C SINE Alu 6 146 0 656 175 0 45 chr4 31290788 31290942 -152997720 + AluSc SINE Alu 1 147 -162 7876 191 35 11 chr4 31291051 31291148 -152997514 + L1 LINE L1 2416 2509 -3637 2086 108 3 51 chr4 31291148 31291464 -152997198 + AluSp SINE Alu 1 301 -12 204 40 0 0 chr4 31291464 31291489 -152997173 + (TA)n Simple_repeat Simple_repeat 2 26 0 7876 191 35 11 chr4 31291489 31293138 -152995524 + L1 LINE L1 2508 4206 -1940 231 36 0 0 chr4 31293142 31293170 -152995492 + (CCTG)n Simple_repeat Simple_repeat 2 29 0 411 83 0 28 chr4 31293172 31293244 -152995418 + (TC)n Simple_repeat Simple_repeat 2 71 0 548 139 12 0 chr4 31293244 31293330 -152995332 - AluSx SINE Alu -34 275 189 909 143 0 34 chr4 31293330 31293477 -152995185 - AluSx SINE Alu -171 142 1 3859 187 73 50 chr4 31293478 31294620 -152994042 + L1 LINE L1 4199 5366 -780 25 31 0 0 chr4 31294763 31294795 -152993867 + AT_rich Low_complexity Low_complexity 1 32 0 4420 235 100 26 chr4 31294955 31295880 -152992782 + L1ME1 LINE L1 3544 4400 -1944 1740 182 0 7 chr4 31295880 31296171 -152992491 + AluJb SINE Alu 1 289 -23 4420 235 100 26 chr4 31296171 31296920 -152991742 + L1ME1 LINE L1 4400 5441 -903 1382 184 164 10 chr4 31296920 31297224 -152991438 - MLT1A1 LTR MaLR 0 365 15 2175 237 49 24 chr4 31297295 31297932 -152990730 + L1ME1 LINE L1 5509 6161 -5 243 67 0 0 chr4 31298023 31298089 -152990573 - AluSq SINE Alu 0 316 251 1221 110 6 0 chr4 31298090 31298254 -152990408 - AluSq SINE Alu -148 165 1 1894 163 0 0 chr4 31298481 31298782 -152989880 - AluSx SINE Alu -11 301 1 2392 67 0 7 chr4 31299133 31299433 -152989229 - AluY SINE Alu -13 298 1 193 308 0 64 chr4 31299916 31299994 -152988668 - L3 LINE CR1 -75 1502 1430 1498 212 27 0 chr4 31300280 31300573 -152988089 + AluJo SINE Alu 1 301 -11 419 211 22 0 chr4 31300607 31300697 -152987965 + MSTB1 LTR MaLR 1 92 -340 * 704 175 147 0 chr4 31300692 31300869 -152987793 + MSTB1 LTR MaLR 193 395 -37 669 226 42 12 chr4 31302629 31302734 -152985928 - MER58C DNA MER1_type -2205 215 102 2275 102 0 0 chr4 31302734 31303037 -152985625 - AluY SINE Alu -7 304 2 669 226 42 12 chr4 31303037 31303099 -152985563 - MER58C DNA MER1_type -2318 102 43 216 0 0 0 chr4 31303176 31303200 -152985462 + (TG)n Simple_repeat Simple_repeat 1 24 0 2083 130 0 0 chr4 31303725 31304017 -152984645 - AluSg SINE Alu -18 292 1 1943 113 46 0 chr4 31304790 31305072 -152983590 - AluSx SINE Alu -5 307 13 24 53 0 0 chr4 31305242 31305280 -152983382 + AT_rich Low_complexity Low_complexity 1 38 0 810 230 22 11 chr4 31305373 31305551 -152983111 + MER20 DNA MER1_type 39 218 -1 202 194 0 0 chr4 31305974 31306010 -152982652 + MIR SINE MIR 217 252 -10 198 252 0 0 chr4 31306304 31306348 -152982314 - MIR SINE MIR -61 147 110 367 217 298 0 chr4 31306433 31306594 -152982068 + MIR SINE MIR 37 245 -17 2294 106 3 0 chr4 31306981 31307293 -152981369 - AluSp SINE Alu 0 313 1 370 350 38 6 chr4 31307847 31308007 -152980655 + L2 LINE L2 2178 2342 -972 6063 86 37 53 chr4 31308487 31309478 -152979184 - L1PA14 LINE L1 -1 6160 5162 402 228 26 44 chr4 31309702 31309816 -152978846 + MIR SINE MIR 137 248 -14 373 302 25 31 chr4 31310197 31310356 -152978306 - MIR SINE MIR -49 213 56 29 0 0 0 chr4 31310693 31310722 -152977940 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 31311170 31311191 -152977471 + AT_rich Low_complexity Low_complexity 1 21 0 2175 152 24 34 chr4 31311566 31312101 -152976561 - LTR10E LTR ERV1 -43 590 1 21 0 0 0 chr4 31312545 31312566 -152976096 + AT_rich Low_complexity Low_complexity 1 21 0 1788 133 91 0 chr4 31312989 31313274 -152975388 - AluJb SINE Alu -1 311 1 422 331 36 57 chr4 31313692 31313940 -152974722 - MIR SINE MIR -16 246 4 568 182 15 38 chr4 31314390 31314522 -152974140 + FLAM_C SINE Alu 1 129 -4 2393 92 0 0 chr4 31314600 31314903 -152973759 - AluSg SINE Alu -7 303 1 876 126 0 47 chr4 31316234 31316362 -152972300 + FLAM_C SINE Alu 1 121 -12 217 0 0 0 chr4 31316362 31316386 -152972276 + (TAAA)n Simple_repeat Simple_repeat 1 172 0 2519 49 0 26 chr4 31316931 31317237 -152971425 + AluY SINE Alu 1 298 -13 812 170 195 20 chr4 31317286 31317362 -152971300 + MER46A DNA MER2_type 2 63 -2668 1942 138 4 0 chr4 31317362 31317637 -152971025 - AluSx SINE Alu -36 276 1 812 170 195 20 chr4 31317637 31317760 -152970902 + MER46A DNA MER2_type 63 236 0 1091 244 123 71 chr4 31318197 31318677 -152969985 + L2 LINE L2 2809 3313 0 440 197 76 23 chr4 31318938 31319070 -152969592 + Charlie8 DNA MER1_type 57 195 -2222 342 321 79 0 chr4 31319116 31319281 -152969381 + Charlie8 DNA MER1_type 295 472 -1945 1804 168 10 0 chr4 31319282 31319574 -152969088 - AluJb SINE Alu -17 295 1 1235 200 122 15 chr4 31321365 31321635 -152967027 - AluJo SINE Alu -13 299 1 21 36 0 0 chr4 31322638 31322666 -152965996 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr4 31323082 31323117 -152965545 + AT_rich Low_complexity Low_complexity 1 35 0 1888 174 3 0 chr4 31324073 31324383 -152964279 - AluJb SINE Alu -1 311 1 335 271 49 84 chr4 31326006 31326231 -152962431 + MER20 DNA MER1_type 2 218 -1 2161 101 7 7 chr4 31326410 31326708 -152961954 - AluSx SINE Alu -14 298 1 671 204 137 152 chr4 31326744 31327650 -152961012 - L1MC5 LINE L1 -107 7854 6963 200 200 0 0 chr4 31327655 31327695 -152960967 + T-rich Low_complexity Low_complexity 1 40 0 210 91 0 0 chr4 31327703 31327736 -152960926 + (TTG)n Simple_repeat Simple_repeat 2 34 0 424 234 113 65 chr4 31327779 31328213 -152960449 - L1MC5 LINE L1 -33 7928 7342 1170 183 249 22 chr4 31328214 31328587 -152960075 - MER31B LTR ERV1 -1 660 5 1201 173 49 124 chr4 31330408 31330715 -152957947 + AluJb SINE Alu 1 284 -28 1849 263 222 27 chr4 31331638 31332966 -152955696 - L2 LINE L2 -84 3229 1636 306 242 141 0 chr4 31333141 31333240 -152955422 + MIR SINE MIR 33 145 -63 573 247 146 6 chr4 31333392 31333550 -152955112 + MER5A DNA MER1_type 10 189 0 312 27 0 0 chr4 31336289 31336326 -152952336 + (A)n Simple_repeat Simple_repeat 1 37 0 2142 119 0 7 chr4 31340475 31340770 -152947892 - AluSx SINE Alu -19 293 1 23 0 0 0 chr4 31341012 31341035 -152947627 + AT_rich Low_complexity Low_complexity 1 23 0 1143 106 182 20 chr4 31342190 31342388 -152946274 - MER30 DNA MER1_type 0 230 1 1976 141 3 16 chr4 31343677 31343983 -152944679 - AluSx SINE Alu -10 302 1 1760 175 0 16 chr4 31343983 31344286 -152944376 - AluJb SINE Alu -14 298 1 201 247 143 13 chr4 31344354 31344431 -152944231 - L2 LINE L2 -54 3259 3173 789 226 45 34 chr4 31345045 31345311 -152943351 - L2 LINE L2 -905 2409 2141 321 247 0 34 chr4 31345338 31345427 -152943235 - MER5A DNA MER1_type -95 94 9 560 230 164 0 chr4 31346710 31346862 -152941800 + L2 LINE L2 1966 2142 -1172 1255 263 109 90 chr4 31347059 31348170 -152940492 + L2 LINE L2 2158 3311 -2 334 268 104 56 chr4 31348396 31348665 -152939997 - HAL1 LINE L1 -223 2284 2003 368 275 33 0 chr4 31348707 31348798 -152939864 - L2 LINE L2 -25 3288 3195 572 271 77 51 chr4 31348972 31349363 -152939299 - HAL1 LINE L1 -1045 1462 1062 1642 133 12 0 chr4 31349426 31349675 -152938987 - MER67A LTR ERV1 -291 252 1 2856 209 102 16 chr4 31349767 31350613 -152938049 + L1PB3 LINE L1 2287 3206 -3656 995 114 0 0 chr4 31350635 31350767 -152937895 + AluSp SINE Alu 1 132 -181 5459 153 64 38 chr4 31350787 31352698 -152935964 + L1PB3 LINE L1 4915 6869 -1 550 298 93 25 chr4 31352993 31353194 -152935468 - MIR SINE MIR -36 226 17 2298 70 0 0 chr4 31353602 31353889 -152934773 + L1PA8 LINE L1 5866 6152 -20 717 179 123 0 chr4 31354011 31354173 -152934489 - MER5A DNA MER1_type -4 185 4 192 77 0 0 chr4 31354279 31354305 -152934357 + (A)n Simple_repeat Simple_repeat 1 26 0 296 306 48 0 chr4 31354405 31354529 -152934133 + MIR3 SINE MIR 78 207 -1 544 306 35 15 chr4 31354563 31354762 -152933900 - MIR SINE MIR 0 262 60 339 283 103 54 chr4 31354798 31355012 -152933650 + MIR SINE MIR 24 243 -19 1262 119 11 0 chr4 31356538 31356715 -152931947 - AluSg/x SINE Alu -1 311 133 668 212 29 0 chr4 31356784 31356921 -152931741 + L1ME1 LINE L1 5647 5787 -379 1426 226 122 28 chr4 31356922 31357356 -152931306 + MLT1D LTR MaLR 1 475 -30 1303 239 53 6 chr4 31357361 31357716 -152930946 + L1ME1 LINE L1 5787 6158 -8 927 338 65 23 chr4 31358424 31358990 -152929672 - ERVL LTR ERVL -846 4918 4329 2323 98 0 19 chr4 31359022 31359338 -152929324 - AluSq SINE Alu -1 312 3 735 265 67 52 chr4 31359375 31359703 -152928959 - LTR16C LTR ERVL -1 490 158 758 221 47 21 chr4 31360191 31360381 -152928281 + MIR SINE MIR 18 212 -50 694 269 175 44 chr4 31360388 31360753 -152927909 + L2 LINE L2 2897 3309 -4 228 135 0 0 chr4 31360863 31360900 -152927762 + (CATA)n Simple_repeat Simple_repeat 4 40 0 213 121 0 0 chr4 31361397 31361430 -152927232 + (CA)n Simple_repeat Simple_repeat 1 33 0 288 0 0 0 chr4 31361709 31361741 -152926921 + (T)n Simple_repeat Simple_repeat 1 32 0 2215 113 0 10 chr4 31361885 31362187 -152926475 - AluSx SINE Alu -13 299 1 198 260 260 0 chr4 31362501 31362597 -152926065 - L2 LINE L2 -3 3310 3190 2250 105 0 0 chr4 31363421 31363716 -152924946 + AluSg SINE Alu 1 295 -15 315 190 141 124 chr4 31363748 31363818 -152924844 - MER5A DNA MER1_type -53 136 62 1983 144 0 25 chr4 31363818 31364137 -152924525 - AluSx SINE Alu -1 311 1 315 190 141 124 chr4 31364137 31364187 -152924475 - MER5A DNA MER1_type -127 62 14 437 266 62 62 chr4 31364291 31364532 -152924130 - MIR SINE MIR -9 253 13 777 168 0 8 chr4 31364592 31364711 -152923951 + FLAM_C SINE Alu 11 128 -15 227 377 13 0 chr4 31364712 31364789 -152923873 - L2 LINE L2 -35 3278 3201 314 296 20 0 chr4 31364842 31364940 -152923722 + L2 LINE L2 2530 2629 -685 800 290 22 4 chr4 31365031 31365262 -152923400 + MIR SINE MIR 4 238 -24 478 278 75 28 chr4 31365287 31365542 -152923120 + L2 LINE L2 3047 3313 0 251 162 116 93 chr4 31366485 31366597 -152922065 - MLT1J2 LTR MaLR 0 450 285 413 147 0 27 chr4 31366707 31366782 -152921880 - MLT1H LTR MaLR -341 208 136 229 139 0 0 chr4 31368265 31368301 -152920361 - L2 LINE L2 -8 3305 3270 1368 103 0 0 chr4 31368399 31368584 -152920078 - AluSg/x SINE Alu -16 296 112 525 307 73 18 chr4 31368609 31368827 -152919835 - MIR SINE MIR -5 257 28 2278 98 0 0 chr4 31369274 31369580 -152919082 + AluSx SINE Alu 1 306 -6 501 295 108 6 chr4 31369615 31369781 -152918881 + MER5A DNA MER1_type 1 183 -6 351 280 93 9 chr4 31370245 31370352 -152918310 + MIR SINE MIR 51 166 -96 446 175 18 57 chr4 31370471 31370642 -152918020 + MLT1D LTR MaLR 3 235 -270 976 132 0 22 chr4 31370652 31370698 -152917964 + (GGAGAA)n Simple_repeat Simple_repeat 1 222 0 976 132 0 22 chr4 31370698 31370880 -152917782 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 1089 239 62 26 chr4 31370968 31371274 -152917388 + MLT1D LTR MaLR 181 497 -8 485 185 11 0 chr4 31371552 31371644 -152917018 + MER53 DNA DNA 96 188 -1 999 174 0 0 chr4 31372058 31372225 -152916437 - MLT1B LTR MaLR -42 348 182 261 313 0 0 chr4 31372366 31372433 -152916229 - MER63B DNA MER1_type 0 435 369 1381 166 0 17 chr4 31372458 31372792 -152915870 - MSTA LTR MaLR -2 426 1 1098 206 28 32 chr4 31372793 31373046 -152915616 - MER63B DNA MER1_type -167 269 18 351 283 10 10 chr4 31373049 31373148 -152915514 - MLT1L LTR MaLR -390 225 127 2013 160 70 11 chr4 31373181 31373555 -152915107 - MSTD LTR MaLR 0 396 1 216 275 145 14 chr4 31374196 31374265 -152914397 - MIR SINE MIR -1 261 184 315 0 0 0 chr4 31374543 31374578 -152914084 + (TC)n Simple_repeat Simple_repeat 2 36 0 1640 194 36 17 chr4 31374924 31375280 -152913382 + MLT1A1 LTR MaLR 3 365 0 23 68 0 0 chr4 31375753 31375797 -152912865 + AT_rich Low_complexity Low_complexity 1 44 0 4420 124 5 0 chr4 31375822 31376459 -152912203 + L1PA16 LINE L1 5519 6158 -8 204 321 186 14 chr4 31376478 31376618 -152912044 - MIR SINE MIR -86 176 13 203 354 62 8 chr4 31376640 31376770 -152911892 - L2 LINE L2 -849 2465 2329 1526 175 15 4 chr4 31377064 31377338 -152911324 + AluJo SINE Alu 1 277 -35 33 25 0 0 chr4 31377338 31377378 -152911284 + AT_rich Low_complexity Low_complexity 1 40 0 515 253 61 0 chr4 31377626 31377785 -152910877 + MIR SINE MIR 36 205 -57 2299 77 3 3 chr4 31377924 31378223 -152910439 - AluSp SINE Alu -14 299 1 1742 164 13 7 chr4 31378481 31378791 -152909871 - AluJo SINE Alu 0 312 1 363 366 15 8 chr4 31378848 31378979 -152909683 - MIR SINE MIR -61 147 16 196 339 0 15 chr4 31379221 31379286 -152909376 - L2 LINE L2 0 3272 3209 3013 123 25 53 chr4 31379949 31380219 -152908443 + MER41E LTR ERV1 1 277 -235 2298 97 0 0 chr4 31380219 31380530 -152908132 + AluSq SINE Alu 1 311 -2 3013 123 25 53 chr4 31380530 31380624 -152908038 + MER41E LTR ERV1 277 372 -140 2368 70 0 0 chr4 31380624 31380924 -152907738 - AluY SINE Alu -11 300 1 3013 123 25 53 chr4 31380924 31381085 -152907577 + MER41E LTR ERV1 372 512 0 1828 140 6 37 chr4 31383555 31383876 -152904786 + AluJb SINE Alu 1 311 -1 236 202 24 60 chr4 31384452 31384536 -152904126 + CT-rich Low_complexity Low_complexity 2 82 0 21 36 0 0 chr4 31385281 31385309 -152903353 + AT_rich Low_complexity Low_complexity 1 28 0 722 274 27 39 chr4 31386549 31386808 -152901854 - MIR SINE MIR -3 259 4 392 243 14 93 chr4 31387420 31387560 -152901102 - MIR SINE MIR -81 181 53 839 145 0 0 chr4 31387683 31387800 -152900862 + FLAM_C SINE Alu 2 118 -15 2342 89 0 6 chr4 31387832 31388146 -152900516 + AluSp SINE Alu 1 312 -1 565 235 43 31 chr4 31388229 31388391 -152900271 + MIR SINE MIR 65 228 -34 225 244 148 15 chr4 31389383 31389518 -152899144 + L1ME4a LINE L1 5966 6118 -3 1977 139 0 0 chr4 31389554 31389855 -152898807 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr4 31389887 31389909 -152898753 + AT_rich Low_complexity Low_complexity 1 22 0 365 137 123 22 chr4 31390594 31390683 -152897979 - L1MB5 LINE L1 0 6180 6076 665 311 19 9 chr4 31391233 31391445 -152897217 + MIR SINE MIR 48 261 -1 210 244 0 0 chr4 31393538 31393579 -152895083 + (CA)n Simple_repeat Simple_repeat 2 42 0 431 245 57 116 chr4 31393965 31394130 -152894532 - L2 LINE L2 -7 3306 3133 1749 134 14 0 chr4 31394130 31394406 -152894256 - AluJo SINE Alu -32 280 1 431 245 57 116 chr4 31394406 31394686 -152893976 - L2 LINE L2 -180 3133 2798 274 355 0 11 chr4 31395071 31395164 -152893498 + MIR SINE MIR 14 105 -157 441 54 0 0 chr4 31395164 31395220 -152893442 + (TTCC)n Simple_repeat Simple_repeat 4 59 0 279 79 0 0 chr4 31396319 31396357 -152892305 + (TTCC)n Simple_repeat Simple_repeat 2 39 0 1857 162 3 0 chr4 31396357 31396666 -152891996 - AluSx SINE Alu -2 310 1 330 233 203 15 chr4 31396666 31396799 -152891863 + MIR SINE MIR 92 249 -13 185 326 0 0 chr4 31396843 31396892 -152891770 - MIR SINE MIR -64 144 96 219 69 0 0 chr4 31397353 31397382 -152891280 + (TTCCC)n Simple_repeat Simple_repeat 1 29 0 308 346 57 31 chr4 31397513 31397672 -152890990 - MER5A DNA MER1_type -10 179 17 513 254 136 31 chr4 31397710 31397918 -152890744 + MIR SINE MIR 35 262 0 236 277 77 15 chr4 31397989 31398054 -152890608 + L2 LINE L2 3203 3271 -1 2710 93 3 6 chr4 31398171 31398536 -152890126 + THE1B LTR MaLR 1 364 0 341 328 38 8 chr4 31398639 31398770 -152889892 - L2 LINE L2 -1 3271 3137 21 36 0 0 chr4 31399163 31399191 -152889471 + AT_rich Low_complexity Low_complexity 1 28 0 2082 106 3 7 chr4 31399191 31399505 -152889157 + AluSp SINE Alu 1 313 0 370 297 26 73 chr4 31400055 31400247 -152888415 + MIR SINE MIR 68 250 -12 322 253 162 58 chr4 31400258 31400499 -152888163 - L1ME4a LINE L1 -55 6066 5801 2224 95 0 0 chr4 31400659 31400953 -152887709 - AluSg SINE Alu -16 294 1 2033 102 0 27 chr4 31401221 31401514 -152887148 - AluSx SINE Alu -5 307 23 1276 204 38 14 chr4 31401531 31401820 -152886842 - AluJo SINE Alu -11 301 6 1095 117 0 0 chr4 31401941 31402095 -152886567 - AluSg/x SINE Alu -25 285 132 183 42 0 0 chr4 31402095 31402119 -152886543 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1932 95 11 35 chr4 31402119 31402404 -152886258 - AluSx SINE Alu -28 284 7 651 269 58 31 chr4 31402534 31402757 -152885905 - L2 LINE L2 0 3313 3085 1455 243 60 62 chr4 31402930 31403287 -152885375 + MLT1J LTR MaLR 1 359 -152 2046 109 0 7 chr4 31403287 31403600 -152885062 - AluSx SINE Alu 0 311 1 1455 243 60 62 chr4 31403600 31403739 -152884923 + MLT1J LTR MaLR 359 497 -14 815 160 23 0 chr4 31403961 31404092 -152884570 - AluJb SINE Alu -178 134 1 1799 172 0 0 chr4 31404104 31404400 -152884262 - AluSx SINE Alu -16 296 1 3603 50 9 7 chr4 31405113 31405556 -152883106 - MLT2A1 LTR ERVL 0 444 1 247 235 59 24 chr4 31405667 31405752 -152882910 - MIR SINE MIR -76 186 99 303 317 40 0 chr4 31406178 31406279 -152882383 + MIR SINE MIR 103 207 -55 218 383 17 40 chr4 31407427 31407602 -152881060 + L2 LINE L2 3102 3272 0 465 231 266 7 chr4 31407802 31407945 -152880717 - MIR SINE MIR -2 260 81 2131 171 8 3 chr4 31407999 31408362 -152880300 + MLT1A1 LTR MaLR 1 365 0 327 105 15 59 chr4 31408541 31408636 -152880026 + AluSx SINE Alu 1 47 -255 1559 105 22 49 chr4 31408657 31408924 -152879738 + AluSx SINE Alu 42 301 -11 938 286 73 22 chr4 31409144 31409333 -152879329 - L1MC4a LINE L1 -743 5403 5677 486 112 0 101 chr4 31409333 31409422 -152879240 + MADE1 DNA Mariner 1 80 0 938 286 73 22 chr4 31409422 31409926 -152878736 - L1MC4a LINE L1 -468 5678 5201 630 298 58 5 chr4 31409941 31410146 -152878516 + MIR SINE MIR 47 262 0 194 323 135 31 chr4 31410155 31410251 -152878411 - L3 LINE CR1 -185 1392 1287 182 322 93 8 chr4 31410788 31410906 -152877756 + L2 LINE L2 3130 3257 -56 683 160 23 0 chr4 31410914 31411089 -152877573 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 2283 195 68 35 chr4 31411228 31411402 -152877260 - L1MD2 LINE L1 -213 6146 5979 1427 167 14 54 chr4 31411402 31411729 -152876933 - AluJo SINE Alu 0 315 1 2283 195 68 35 chr4 31411729 31412122 -152876540 - L1MD2 LINE L1 -380 5979 5558 1954 116 3 3 chr4 31412426 31412731 -152875931 + AluSp SINE Alu 1 305 0 195 250 62 0 chr4 31414215 31414263 -152874399 - L2 LINE L2 -18 3254 3204 1621 163 10 23 chr4 31414395 31414701 -152873961 - AluJo SINE Alu -10 302 1 329 281 29 65 chr4 31415336 31415475 -152873187 + MIR SINE MIR 1 134 -128 736 293 98 25 chr4 31415799 31416116 -152872546 - LTR16B LTR ERVL 0 464 125 381 58 0 0 chr4 31416438 31416490 -152872172 + (TA)n Simple_repeat Simple_repeat 1 52 0 5312 149 26 3 chr4 31416490 31417407 -152871255 - L1MA5 LINE L1 -22 6278 5341 225 308 84 9 chr4 31417396 31417503 -152871159 + MIR SINE MIR 104 218 -44 * 260 395 0 1 chr4 31417495 31417601 -152871061 - L2 LINE L2 -10 3292 3158 525 250 97 23 chr4 31417796 31417972 -152870690 - MIR SINE MIR -56 206 18 1475 135 71 7 chr4 31418445 31418731 -152869931 - L1MC3 LINE L1 -81 7704 5937 386 274 42 0 chr4 31418956 31419051 -152869611 - MIR SINE MIR -76 186 88 872 117 22 0 chr4 31419654 31419791 -152868871 + L1PB1 LINE L1 6012 6151 0 433 344 54 57 chr4 31419837 31420154 -152868508 - L3 LINE CR1 -1258 319 4 705 299 37 45 chr4 31420787 31421093 -152867569 - L1MC4a LINE L1 -1983 5825 5523 2291 102 0 7 chr4 31421093 31421397 -152867265 + AluSq SINE Alu 1 302 -11 705 299 37 45 chr4 31421397 31421652 -152867010 - L1MC4a LINE L1 -2285 5523 5268 2175 106 33 3 chr4 31421854 31422155 -152866507 - AluSx SINE Alu -2 310 1 311 355 47 34 chr4 31422158 31422392 -152866270 - L1MC4a LINE L1 -1162 4984 4748 865 269 13 26 chr4 31422394 31422628 -152866034 + MIR SINE MIR 1 231 -31 2394 88 3 0 chr4 31422701 31422997 -152865665 - AluSp SINE Alu -16 297 1 188 324 118 52 chr4 31423011 31423147 -152865515 - MIR SINE MIR -115 147 3 412 283 46 13 chr4 31423651 31423803 -152864859 + MLT1J2 LTR MaLR 11 167 -283 1668 193 26 48 chr4 31423819 31424234 -152864428 + MLT2D LTR ERVL 1 406 -8 275 243 69 69 chr4 31424291 31424435 -152864227 + MLT1J2 LTR MaLR 264 407 -43 1868 196 56 25 chr4 31425126 31425575 -152863087 + MLT1C LTR MaLR 1 463 -4 268 292 0 0 chr4 31425625 31425690 -152862972 - MIR SINE MIR -110 98 34 22 35 0 0 chr4 31426350 31426379 -152862283 + AT_rich Low_complexity Low_complexity 1 29 0 1010 277 52 54 chr4 31426446 31426947 -152861715 - LTR67 LTR ERVL 0 557 58 342 0 0 0 chr4 31426951 31426989 -152861673 + (CA)n Simple_repeat Simple_repeat 2 39 0 724 165 17 0 chr4 31428343 31428458 -152860204 - FLAM_A SINE Alu -13 129 13 604 271 135 54 chr4 31428512 31428955 -152859707 + MLT1G1 LTR MaLR 110 588 -7 464 291 62 17 chr4 31429509 31429687 -152858975 - MIR SINE MIR -63 145 3 2226 108 0 3 chr4 31429831 31430127 -152858535 + AluSp SINE Alu 1 295 -18 258 105 0 0 chr4 31430129 31430167 -152858495 + (TA)n Simple_repeat Simple_repeat 2 39 0 739 279 25 37 chr4 31430195 31430439 -152858223 + MIR SINE MIR 12 252 -10 755 158 0 0 chr4 31431007 31431140 -152857522 - MER82 DNA MER2_type -437 216 84 234 267 48 9 chr4 31431144 31431249 -152857413 + L1ME4a LINE L1 5998 6106 -15 182 316 13 13 chr4 31431440 31431516 -152857146 - L3b LINE CR1 -362 1221 1146 2155 192 22 16 chr4 31431919 31432362 -152856300 + MER82 DNA MER2_type 1 446 -207 2150 204 166 41 chr4 31432362 31433096 -152855566 - LTR1B LTR ERV1 0 826 1 1018 242 5 0 chr4 31433096 31433305 -152855357 + MER82 DNA MER2_type 444 653 0 313 369 0 0 chr4 31433318 31433429 -152855233 - MIR SINE MIR -8 254 144 943 258 77 19 chr4 31433430 31433857 -152854805 + LTR1 LTR ERV1 4 455 -330 1611 173 50 21 chr4 31433990 31434273 -152854389 - AluJb SINE Alu -17 295 5 1949 138 3 0 chr4 31434342 31434652 -152854010 - AluSx SINE Alu 0 311 1 489 339 28 6 chr4 31435488 31435668 -152852994 - MIR SINE MIR -32 230 47 2168 103 0 56 chr4 31435695 31435868 -152852794 - AluSx SINE Alu -10 302 154 2405 61 7 7 chr4 31435868 31436178 -152852484 - AluY SINE Alu -1 310 1 2168 103 0 56 chr4 31436178 31436324 -152852338 - AluSx SINE Alu -158 154 1 606 217 138 69 chr4 31437084 31437462 -152851200 + MLT1J2 LTR MaLR 47 450 0 625 236 53 49 chr4 31437942 31438188 -152850474 - L1MC/D LINE L1 -2065 5743 5497 908 240 65 31 chr4 31438196 31438517 -152850145 - MLT1C LTR MaLR 0 467 136 234 188 0 0 chr4 31438511 31438559 -152850103 - Alu SINE Alu -72 94 47 * 769 197 7 0 chr4 31438559 31438696 -152849966 - AluJo SINE Alu -161 151 14 321 192 26 51 chr4 31438706 31438784 -152849878 - MLT1C LTR MaLR -429 76 1 2469 137 25 23 chr4 31438848 31439280 -152849382 + Tigger2a DNA MER2_type 1 433 -1 512 278 139 20 chr4 31439291 31439586 -152849076 + L2 LINE L2 1989 2318 -996 254 146 0 0 chr4 31439586 31439627 -152849035 - MER96B DNA MER1_type? -182 235 195 746 210 6 11 chr4 31439888 31440064 -152848598 - MER96B DNA MER1_type? -242 175 1 1079 292 151 20 chr4 31440064 31440897 -152847765 + L2 LINE L2 2337 3281 -32 1436 185 100 4 chr4 31440959 31441107 -152847555 - AluJo SINE Alu -16 296 164 189 0 0 0 chr4 31441107 31441128 -152847534 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1436 185 100 4 chr4 31441128 31441249 -152847413 - AluJo SINE Alu -148 164 1 216 226 38 0 chr4 31441418 31441471 -152847191 + (TCTCTG)n Simple_repeat Simple_repeat 4 58 0 387 168 65 47 chr4 31441972 31442079 -152846583 - MIR SINE MIR -89 173 65 656 154 0 9 chr4 31442378 31442488 -152846174 - MLT1A1 LTR MaLR 0 365 257 461 117 0 26 chr4 31442510 31442587 -152846075 - MLT1A1 LTR MaLR -281 84 10 237 200 0 0 chr4 31442695 31442750 -152845912 - MLT2B3 LTR ERVL 0 520 466 1609 128 15 158 chr4 31442780 31443172 -152845490 + Tigger3(Golem) DNA MER2_type 11 3026 -3 2661 168 47 18 chr4 31443184 31443678 -152844984 - MLT2B3 LTR ERVL -46 508 1 3472 51 7 0 chr4 31444086 31444520 -152844142 + L1PA8 LINE L1 5727 6163 -9 2196 114 30 0 chr4 31444827 31445124 -152843538 + AluSx SINE Alu 3 308 -4 212 380 20 20 chr4 31445745 31445845 -152842817 + L2 LINE L2 3179 3278 -35 444 223 17 109 chr4 31446459 31446634 -152842028 + MER5B DNA MER1_type 20 178 0 4561 123 14 46 chr4 31446919 31447045 -152841617 - L1PA15 LINE L1 -40 6125 5996 14517 137 14 5 chr4 31447045 31450288 -152838374 - L1PA10 LINE L1 -11 6157 2886 4561 123 14 46 chr4 31450288 31450973 -152837689 - L1PA15 LINE L1 -169 5996 5340 * 5309 179 13 6 chr4 31450971 31452012 -152836650 - L1PA15 LINE L1 -1485 4661 3613 1865 212 46 48 chr4 31452763 31453414 -152835248 - Charlie7 DNA MER1_type -3 2609 1960 348 290 31 0 chr4 31453474 31453636 -152835026 - Charlie7 DNA MER1_type -648 1964 1798 324 43 0 0 chr4 31453637 31453683 -152834979 + MADE1 DNA Mariner 1 46 -34 247 233 14 0 chr4 31453706 31453779 -152834883 - Charlie7 DNA MER1_type -823 1789 1716 29204 112 14 56 chr4 31453780 31460210 -152828452 - L1PA7 LINE L1 -1 6153 1 446 212 75 14 chr4 31460218 31460364 -152828298 - Charlie7 DNA MER1_type -899 1713 1559 905 154 48 5 chr4 31460956 31461253 -152827409 - THE1B LTR MaLR 0 364 1 1077 264 25 43 chr4 31461304 31461792 -152826870 - Charlie7 DNA MER1_type -1374 1238 760 4662 196 24 7 chr4 31461825 31462512 -152826150 - L1MB3 LINE L1 -2 6417 5743 306 0 0 0 chr4 31462512 31462546 -152826116 + (TG)n Simple_repeat Simple_repeat 1 34 0 4662 196 24 7 chr4 31462546 31463847 -152824815 - L1MB3 LINE L1 -676 5743 4392 257 292 75 13 chr4 31463871 31464179 -152824483 + L1M4 LINE L1 3168 3494 -2652 240 100 0 0 chr4 31464536 31464576 -152824086 + (CA)n Simple_repeat Simple_repeat 2 41 0 5777 206 41 37 chr4 31464599 31465850 -152822812 - L1MB3 LINE L1 -1966 4416 3171 1612 154 54 18 chr4 31465850 31466129 -152822533 + AluJo SINE Alu 1 289 -23 5777 206 41 37 chr4 31466129 31467459 -152821203 - L1MB3 LINE L1 -3211 3171 1735 1107 141 58 0 chr4 31467454 31467645 -152821017 - L1MB3 LINE L1 -6159 225 24 * 748 306 70 16 chr4 31467645 31468142 -152820520 - Charlie7 DNA MER1_type -1876 736 213 2783 72 3 6 chr4 31468213 31468562 -152820100 + THE1B LTR MaLR 17 364 0 1786 164 7 4 chr4 31468730 31469034 -152819628 + AluJo SINE Alu 1 305 0 213 341 22 0 chr4 31470282 31470373 -152818289 - MIR3 SINE MIR -5 203 111 2049 135 10 0 chr4 31470670 31470966 -152817696 - AluSg SINE Alu -11 299 1 1607 152 52 38 chr4 31471152 31471441 -152817221 - AluJb SINE Alu -19 293 1 366 246 174 36 chr4 31471441 31471598 -152817064 - MIR3 SINE MIR -8 200 17 2457 63 0 0 chr4 31472680 31472982 -152815680 - AluY SINE Alu -9 302 1 475 296 87 45 chr4 31473286 31473550 -152815112 + L2 LINE L2 3024 3298 -15 240 296 204 0 chr4 31473983 31474071 -152814591 + MIR SINE MIR 32 137 -71 1837 213 25 3 chr4 31474071 31474428 -152814234 - MLT1A1 LTR MaLR 0 365 1 1687 226 37 3 chr4 31474930 31475307 -152813355 + MLT1B LTR MaLR 1 390 0 2225 152 69 12 chr4 31475408 31475830 -152812832 + L1MA6 LINE L1 5679 6124 -176 2741 126 5 0 chr4 31475841 31476246 -152812416 - L1PB1 LINE L1 -3 6148 5742 859 158 33 11 chr4 31476246 31476428 -152812234 + L1MA6 LINE L1 6110 6297 -3 27 0 0 0 chr4 31476428 31476455 -152812207 + AT_rich Low_complexity Low_complexity 1 27 0 304 344 91 5 chr4 31476768 31476954 -152811708 + LTR67 LTR ERVL 356 557 0 207 285 145 89 chr4 31477035 31477214 -152811448 - MER5A DNA MER1_type 0 189 1 694 296 6 0 chr4 31477219 31477398 -152811264 - MIR SINE MIR -10 252 73 1572 144 186 55 chr4 31477410 31477487 -152811175 - MSTB1 LTR MaLR 0 432 366 2116 117 7 0 chr4 31477487 31477778 -152810884 + AluSq SINE Alu 1 293 -20 1572 144 186 55 chr4 31477778 31478082 -152810580 - MSTB1 LTR MaLR -66 366 1 316 229 100 50 chr4 31478938 31479078 -152809584 + MIR SINE MIR 55 201 -61 192 97 0 0 chr4 31479113 31479144 -152809518 + (GAAAA)n Simple_repeat Simple_repeat 2 32 0 212 348 11 22 chr4 31479172 31479264 -152809398 + MIR SINE MIR 16 106 -102 27 29 0 0 chr4 31479363 31479397 -152809265 + AT_rich Low_complexity Low_complexity 1 34 0 2510 172 15 17 chr4 31480087 31480506 -152808156 + MLT2C2 LTR ERVL 1 420 -44 360 43 0 0 chr4 31480506 31480552 -152808110 + (TG)n Simple_repeat Simple_repeat 2 47 0 2510 172 15 17 chr4 31480552 31480597 -152808065 + MLT2C2 LTR ERVL 420 464 0 853 209 15 15 chr4 31480787 31480988 -152807674 - LTR16C LTR ERVL -6 485 285 198 0 0 0 chr4 31481799 31481821 -152806841 + (GA)n Simple_repeat Simple_repeat 2 23 0 916 247 86 49 chr4 31482555 31482716 -152805946 + MLT1L LTR MaLR 111 265 -350 2372 84 3 6 chr4 31482716 31483049 -152805613 - L1PA8 LINE L1 -2 6170 5839 916 247 86 49 chr4 31483049 31483277 -152805385 + MLT1L LTR MaLR 265 581 -34 2984 56 13 8 chr4 31484437 31484830 -152803832 - L1PA8 LINE L1 -6 6166 5772 29 0 0 0 chr4 31485421 31485450 -152803212 + AT_rich Low_complexity Low_complexity 1 29 0 392 286 20 0 chr4 31486148 31486246 -152802416 + MER5A DNA MER1_type 10 109 -80 205 185 56 0 chr4 31486602 31486656 -152802006 + (TGAA)n Simple_repeat Simple_repeat 1 57 0 180 378 61 0 chr4 31486656 31486738 -152801924 + L2 LINE L2 3150 3236 -36 246 260 135 29 chr4 31486843 31486947 -152801715 - MIR SINE MIR -33 229 115 357 17 34 34 chr4 31487636 31487695 -152800967 + (CAAAAA)n Simple_repeat Simple_repeat 2 60 0 4349 214 65 37 chr4 31488083 31488815 -152799847 - L1ME1 LINE L1 -224 6737 6027 2074 130 0 3 chr4 31488815 31489108 -152799554 - AluSx SINE Alu -20 292 1 4349 214 65 37 chr4 31489108 31490519 -152798143 - L1ME1 LINE L1 -934 6027 4658 2018 148 3 0 chr4 31490519 31490817 -152797845 + AluJb SINE Alu 1 299 -13 4349 214 65 37 chr4 31490817 31491245 -152797417 - L1ME1 LINE L1 -2303 4658 4244 2445 82 0 0 chr4 31491245 31491548 -152797114 - AluY SINE Alu -8 303 1 4349 214 65 37 chr4 31491548 31492141 -152796521 - L1ME1 LINE L1 -2717 4244 3386 2754 265 92 51 chr4 31492140 31492254 -152796408 - L1ME1 LINE L1 -5202 1221 1113 * 1886 121 0 0 chr4 31492254 31492503 -152796159 + AluSx SINE Alu 39 287 -25 207 0 0 0 chr4 31492507 31492530 -152796132 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2754 265 92 51 chr4 31492530 31493568 -152795094 - L1ME1 LINE L1 -5312 1111 17 681 204 55 41 chr4 31493600 31493820 -152794842 - L1M4 LINE L1 -2428 3718 3496 1522 160 61 77 chr4 31493832 31494035 -152794627 - L1MC2 LINE L1 -38 6306 6110 522 225 0 36 chr4 31494035 31494173 -152794489 - FLAM_A SINE Alu 0 133 1 1522 160 61 77 chr4 31494173 31494344 -152794318 - L1MC2 LINE L1 -234 6110 5938 323 313 81 25 chr4 31494560 31494758 -152793904 - L1MC2 LINE L1 -23 6390 6182 641 162 0 44 chr4 31494771 31494907 -152793755 - FLAM_A SINE Alu 0 142 13 2125 157 32 20 chr4 31494921 31495323 -152793339 - L1MC2 LINE L1 -238 6175 5769 805 102 8 0 chr4 31495345 31495463 -152793199 + LTR15 LTR ERV1 1 119 -374 18571 31 1 1 chr4 31495463 31498398 -152790264 + L1PA4 LINE L1 3146 6080 -75 2613 77 32 13 chr4 31498417 31498794 -152789868 + LTR15 LTR ERV1 104 487 -6 342 139 0 42 chr4 31498787 31498859 -152789803 + AluSc SINE Alu 231 299 0 * 2486 164 48 44 chr4 31498860 31499894 -152788768 - L1MC2 LINE L1 -637 5776 4747 26 0 0 0 chr4 31499910 31499936 -152788726 + AT_rich Low_complexity Low_complexity 1 26 0 2003 141 0 0 chr4 31499936 31500226 -152788436 - AluSx SINE Alu -22 290 1 2576 273 79 19 chr4 31500240 31500425 -152788237 - L1MC2 LINE L1 -2669 3546 3373 297 0 0 0 chr4 31500425 31500458 -152788204 + (TG)n Simple_repeat Simple_repeat 1 33 0 2576 273 79 19 chr4 31500458 31501462 -152787200 - L1MC2 LINE L1 -2842 3373 2286 986 83 8 0 chr4 31501501 31501633 -152787029 - AluSq/x SINE Alu -180 133 1 584 258 115 85 chr4 31501651 31502051 -152786611 - L1MC2 LINE L1 -4105 2291 1880 854 200 77 91 chr4 31502158 31502363 -152786299 - MER46C DNA MER2_type -3 335 135 2443 63 0 0 chr4 31502363 31502663 -152785999 - AluY SINE Alu -11 300 1 854 200 77 91 chr4 31502663 31502797 -152785865 - MER46C DNA MER2_type -203 135 1 245 231 10 39 chr4 31502845 31502949 -152785713 + GA-rich Low_complexity Low_complexity 2 102 0 2127 121 3 19 chr4 31503633 31503948 -152784714 + AluSx SINE Alu 1 310 -2 235 130 37 0 chr4 31505073 31505127 -152783535 + (TA)n Simple_repeat Simple_repeat 1 56 0 1290 174 17 14 chr4 31505141 31505403 -152783259 - L1MB3 LINE L1 -164 6019 5756 253 279 115 39 chr4 31506092 31506196 -152782466 - L2 LINE L2 -13 3300 3189 4859 197 72 30 chr4 31506196 31506402 -152782260 + Charlie1a DNA MER1_type 1 197 -2564 2450 78 3 0 chr4 31506402 31506709 -152781953 - AluY SINE Alu -3 308 1 4859 197 72 30 chr4 31506709 31507754 -152780908 + Charlie1a DNA MER1_type 197 1305 -150 2014 159 17 0 chr4 31507766 31508112 -152780550 - L1MB3 LINE L1 -9 6174 5823 707 69 0 0 chr4 31508112 31508213 -152780449 - AluY SINE Alu -1 310 210 210 37 0 0 chr4 31508239 31508266 -152780396 + (TAA)n Simple_repeat Simple_repeat 2 28 0 586 173 53 23 chr4 31508266 31508399 -152780263 - L1MB3 LINE L1 -475 5708 5572 7215 35 0 1 chr4 31508407 31509267 -152779395 - L1PA3 LINE L1 0 6155 5297 407 186 52 0 chr4 31509283 31509380 -152779282 + Charlie1a DNA MER1_type 1304 1405 -50 569 196 0 0 chr4 31509380 31509482 -152779180 - FLAM_A SINE Alu -20 122 21 267 128 85 0 chr4 31509510 31509557 -152779105 + Charlie1a DNA MER1_type 1396 1446 -9 503 314 54 74 chr4 31509630 31510091 -152778571 + L3 LINE CR1 1118 1569 -8 335 333 120 0 chr4 31510779 31510929 -152777733 - MIR SINE MIR -73 189 22 25 0 0 0 chr4 31510996 31511021 -152777641 + AT_rich Low_complexity Low_complexity 1 25 0 2215 46 8 29 chr4 31512204 31512577 -152776085 + L1PA4 LINE L1 5663 6152 -3 185 348 201 26 chr4 31512631 31512970 -152775692 - L2 LINE L2 -40 3232 2835 674 235 23 86 chr4 31513158 31513460 -152775202 - L2 LINE L2 -1 3312 3030 209 319 75 11 chr4 31513429 31513523 -152775139 - L2 LINE L2 -661 2653 2554 * 5346 94 20 3 chr4 31513807 31514573 -152774089 - L1PA15 LINE L1 0 6165 5387 1522 230 50 45 chr4 31514649 31515188 -152773474 - L1MC5 LINE L1 -430 7531 6990 213 335 54 38 chr4 31515660 31515845 -152772817 - L2 LINE L2 -813 2501 2314 21 0 0 0 chr4 31516501 31516522 -152772140 + AT_rich Low_complexity Low_complexity 1 21 0 1546 71 5 0 chr4 31516673 31516869 -152771793 - MER107 DNA MER1_type 0 197 1 1958 149 0 3 chr4 31518035 31518336 -152770326 - AluSx SINE Alu -12 300 1 466 257 46 0 chr4 31518680 31518789 -152769873 - L2 LINE L2 -14 3299 3186 524 213 77 30 chr4 31520240 31520383 -152768279 - MIR SINE MIR 0 262 113 1400 181 211 18 chr4 31520386 31520718 -152767944 - MSTD LTR MaLR 0 396 1 352 337 32 0 chr4 31520723 31520818 -152767844 - MIR SINE MIR -155 107 10 695 357 71 38 chr4 31521464 31521993 -152766669 - L2 LINE L2 -22 3250 2701 350 272 29 48 chr4 31521989 31522092 -152766570 - L2 LINE L2 -1 3271 3171 * 184 333 11 33 chr4 31522115 31522205 -152766457 - L2 LINE L2 -661 2653 2566 361 179 179 9 chr4 31522320 31522426 -152766236 + L2 LINE L2 3190 3313 0 2323 93 0 3 chr4 31522562 31522863 -152765799 - AluY SINE Alu -11 300 1 1020 301 108 12 chr4 31523396 31523802 -152764860 + L2 LINE L2 2820 3264 -49 241 152 43 0 chr4 31524853 31524899 -152763763 - L1MC5 LINE L1 -89 7872 7825 22 0 0 0 chr4 31524972 31524994 -152763668 + AT_rich Low_complexity Low_complexity 1 22 0 3498 38 0 2 chr4 31525183 31525608 -152763054 + L1PA4 LINE L1 5724 6147 -8 1312 195 73 34 chr4 31525899 31526227 -152762435 + MER58B DNA MER1_type 1 341 0 253 340 150 0 chr4 31526227 31526327 -152762335 + L2 LINE L2 3148 3262 -10 186 42 0 0 chr4 31526966 31526990 -152761672 + L2 LINE L2 2332 2355 -959 180 152 0 0 chr4 31527133 31527166 -152761496 + (ATG)n Simple_repeat Simple_repeat 1 33 0 656 124 0 0 chr4 31527731 31527828 -152760834 - AluSg/x SINE Alu -8 302 206 320 116 0 0 chr4 31527828 31527887 -152760775 - Alu SINE Alu -262 40 1 189 315 0 0 chr4 31527959 31528013 -152760649 + L2 LINE L2 3211 3264 -8 221 383 74 40 chr4 31528057 31528232 -152760430 - L2 LINE L2 -4 3268 3088 3366 126 39 14 chr4 31528728 31529298 -152759364 - L1MC3 LINE L1 -13 7772 7189 395 264 0 0 chr4 31529298 31529389 -152759273 - MLT1F1 LTR MaLR -442 125 35 784 115 64 13 chr4 31529389 31529546 -152759116 - L1MC3 LINE L1 -688 7097 6933 492 206 11 0 chr4 31529547 31529639 -152759023 - MER103 DNA DNA -72 94 2 489 257 251 5 chr4 31529751 31529938 -152758724 - MIR SINE MIR 0 262 30 370 81 54 0 chr4 31530173 31530247 -152758415 + T-rich Low_complexity Low_complexity 2 79 0 7718 20 5 0 chr4 31530250 31531804 -152756858 - L1PA3 LINE L1 -3 6152 4595 4570 19 0 0 chr4 31531804 31532329 -152756333 + L1PA3 LINE L1 4077 4601 -1545 340 332 61 89 chr4 31532521 31532882 -152755780 + L2 LINE L2 2922 3272 0 584 269 141 29 chr4 31532908 31533291 -152755371 + L1ME4a LINE L1 5597 6022 -99 353 290 63 63 chr4 31533968 31534175 -152754487 - L3 LINE CR1 -74 1503 1297 188 268 174 58 chr4 31534704 31534842 -152753820 + L2 LINE L2 3160 3313 0 250 247 94 0 chr4 31535097 31535182 -152753480 + MIR SINE MIR 122 214 -48 16519 136 14 18 chr4 31535559 31538287 -152750375 - Tigger2 DNA MER2_type 0 2718 2 187 229 0 0 chr4 31539036 31539071 -152749591 - L2 LINE L2 -18 3295 3261 228 257 0 140 chr4 31539084 31539220 -152749442 - L2 LINE L2 -164 3108 2992 371 318 0 16 chr4 31539336 31539465 -152749197 - MIR SINE MIR 0 262 136 799 231 68 81 chr4 31539686 31540130 -152748532 + L1MC4 LINE L1 7321 7854 -188 445 311 62 10 chr4 31540239 31540448 -152748214 + L2 LINE L2 3094 3313 0 2116 96 4 4 chr4 31540729 31541031 -152747631 - AluY SINE Alu 0 302 1 1712 165 3 38 chr4 31542404 31542719 -152745943 - AluJo SINE Alu -8 304 1 25 31 0 0 chr4 31542744 31542776 -152745886 + AT_rich Low_complexity Low_complexity 1 32 0 21 82 0 0 chr4 31542885 31542934 -152745728 + AT_rich Low_complexity Low_complexity 1 49 0 189 162 0 0 chr4 31543619 31543656 -152745006 - L2 LINE L2 -310 2962 2926 222 323 135 0 chr4 31543663 31543759 -152744903 - L2 LINE L2 -580 2734 2626 32413 89 8 9 chr4 31543798 31548363 -152740299 + L1PA6 LINE L1 11 4571 -1575 6745 61 48 16 chr4 31548363 31549201 -152739461 + L1PA6 LINE L1 4489 5299 -855 2811 3 0 0 chr4 31549201 31549504 -152739158 + AluYa5 SINE Alu 1 303 -8 6745 61 48 16 chr4 31549504 31550302 -152738360 + L1PA6 LINE L1 5299 6154 0 550 365 93 3 chr4 31550393 31550703 -152737959 - L2 LINE L2 -691 2623 2286 942 303 152 14 chr4 31550726 31551391 -152737271 + L2 LINE L2 2464 3242 -71 233 203 141 0 chr4 31551869 31551933 -152736729 + L2 LINE L2 3226 3298 -15 234 62 0 0 chr4 31551935 31551967 -152736695 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 21 57 0 0 chr4 31552507 31552542 -152736120 + AT_rich Low_complexity Low_complexity 1 35 0 1679 153 20 35 chr4 31552706 31553052 -152735610 - L1MB8 LINE L1 -1 6177 5837 14392 92 10 2 chr4 31553071 31555745 -152732917 - L1PA4 LINE L1 0 6155 3465 1130 50 7 0 chr4 31555745 31555884 -152732778 - BC200 scRNA scRNA -60 140 1 26975 64 1 2 chr4 31555884 31559364 -152729298 - L1PA4 LINE L1 -2669 3477 1 30 0 0 0 chr4 31559408 31559438 -152729224 + AT_rich Low_complexity Low_complexity 1 30 0 380 268 98 68 chr4 31559615 31559880 -152728782 - L1ME4a LINE L1 -239 5882 5610 1951 143 3 3 chr4 31559907 31560200 -152728462 - AluSx SINE Alu -17 295 3 815 90 8 0 chr4 31560302 31560424 -152728238 + (TTC)n Simple_repeat Simple_repeat 1 123 0 9341 81 5 1 chr4 31560429 31562485 -152726177 - L1PA7 LINE L1 0 6154 4094 21 71 0 0 chr4 31563368 31563410 -152725252 + AT_rich Low_complexity Low_complexity 1 42 0 795 201 5 62 chr4 31563797 31563991 -152724671 + LTR41 LTR ERVL 3 185 -588 257 230 158 43 chr4 31564113 31564252 -152724410 + LTR50 LTR ERVL 488 642 -153 797 297 122 55 chr4 31564308 31564947 -152723715 + HAL1 LINE L1 237 918 -1589 2416 240 152 39 chr4 31565550 31566766 -152721896 + HAL1 LINE L1 945 2298 -209 268 333 37 100 chr4 31567363 31567633 -152721029 - L2 LINE L2 -16 3256 3004 2336 94 0 9 chr4 31567987 31568316 -152720346 - LTR17 LTR ERV1 -454 326 1 1623 65 0 0 chr4 31568316 31568516 -152720146 - HERV17 LTR ERV1 0 8626 8427 21 0 0 0 chr4 31568821 31568842 -152719820 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr4 31569430 31569463 -152719199 + AT_rich Low_complexity Low_complexity 1 33 0 498 311 45 0 chr4 31570278 31570410 -152718252 + MIR SINE MIR 16 153 -55 2197 250 58 50 chr4 31570559 31571320 -152717342 - L1ME3A LINE L1 0 6170 5398 630 169 99 16 chr4 31571323 31571479 -152717183 - MIR SINE MIR -94 114 1 25 83 0 0 chr4 31571486 31571546 -152717116 + AT_rich Low_complexity Low_complexity 1 60 0 229 289 26 70 chr4 31571730 31571844 -152716818 - L2 LINE L2 0 3272 3164 330 26 0 0 chr4 31572326 31572365 -152716297 + (CA)n Simple_repeat Simple_repeat 2 40 0 240 247 56 34 chr4 31572628 31572717 -152715945 - MER103 DNA DNA -9 157 67 247 164 16 16 chr4 31573532 31573593 -152715069 + (TA)n Simple_repeat Simple_repeat 2 62 0 3240 219 64 21 chr4 31573901 31574910 -152713752 - L1ME3A LINE L1 0 6170 5125 29 0 0 0 chr4 31575462 31575491 -152713171 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr4 31576140 31576175 -152712487 + AT_rich Low_complexity Low_complexity 1 35 0 208 174 0 22 chr4 31576346 31576392 -152712270 + T-rich Low_complexity Low_complexity 4 48 0 189 0 0 0 chr4 31576768 31576789 -152711873 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 315 0 0 0 chr4 31576788 31576823 -152711839 + (CA)n Simple_repeat Simple_repeat 2 36 0 567 293 50 37 chr4 31577899 31578141 -152710521 + MIR SINE MIR 7 251 -11 35 71 0 0 chr4 31578174 31578244 -152710418 + AT_rich Low_complexity Low_complexity 1 70 0 23 0 0 0 chr4 31579364 31579387 -152709275 + AT_rich Low_complexity Low_complexity 1 23 0 298 360 126 9 chr4 31579517 31579739 -152708923 + L2 LINE L2 1233 1480 -1834 1974 136 7 3 chr4 31579783 31580085 -152708577 + AluSx SINE Alu 1 303 -9 186 363 12 25 chr4 31581061 31581141 -152707521 + MIR SINE MIR 2 80 -182 1805 146 35 0 chr4 31582200 31582371 -152706291 - AluSx SINE Alu -14 298 112 414 0 0 0 chr4 31582371 31582417 -152706245 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1805 146 35 0 chr4 31582417 31582533 -152706129 - AluSx SINE Alu -200 112 1 248 109 455 0 chr4 31582922 31582977 -152705685 + MADE1 DNA Mariner 1 80 0 1628 153 68 36 chr4 31583184 31583549 -152705113 - LTR36 LTR ERV1 -234 377 1 378 333 8 0 chr4 31583576 31583699 -152704963 + Tigger8 DNA MER2_type 530 653 -13 198 300 14 29 chr4 31584793 31584863 -152703799 + MIR SINE MIR 20 88 -120 222 235 123 0 chr4 31585053 31585134 -152703528 + MIR3 SINE MIR 102 192 -16 22 35 0 0 chr4 31685588 31685617 -152603045 + AT_rich Low_complexity Low_complexity 1 29 0 182 241 167 0 chr4 31686142 31686196 -152602466 - MER5C DNA MER1_type -1 323 261 192 339 18 0 chr4 31686332 31686411 -152602251 - MIR SINE MIR -85 123 74 909 90 0 16 chr4 31686889 31687011 -152601651 - FRAM SINE Alu -14 162 43 588 288 33 0 chr4 31687262 31687415 -152601247 + MIR SINE MIR 37 194 -68 1684 163 31 31 chr4 31687435 31687755 -152600907 + MER2 DNA MER2_type 1 320 -25 772 240 153 100 chr4 31689435 31690056 -152598606 + L2 LINE L2 2574 3248 -65 302 205 12 0 chr4 31690757 31690840 -152597822 + (TATG)n Simple_repeat Simple_repeat 3 86 0 245 172 0 212 chr4 31690894 31690993 -152597669 + L2 LINE L2 3235 3312 -1 1468 121 5 5 chr4 31691225 31691440 -152597222 + AluSx SINE Alu 1 215 -97 1523 183 49 14 chr4 31692208 31692493 -152596169 - AluJo SINE Alu -17 295 1 187 403 0 0 chr4 31692567 31692629 -152596033 + MIR SINE MIR 40 101 -161 489 47 0 0 chr4 31693002 31693066 -152595596 + (TG)n Simple_repeat Simple_repeat 2 65 0 193 346 77 31 chr4 31693477 31693607 -152595055 + L3b LINE CR1 1183 1318 -265 21 0 0 0 chr4 31693690 31693711 -152594951 + AT_rich Low_complexity Low_complexity 1 21 0 242 206 48 16 chr4 31694381 31694444 -152594218 + MIR SINE MIR 105 169 -93 234 354 69 28 chr4 31695091 31695235 -152593427 - L2 LINE L2 -4 3268 3119 211 150 25 0 chr4 31697144 31697184 -152591478 + (TA)n Simple_repeat Simple_repeat 1 41 0 1227 189 43 4 chr4 31698389 31698622 -152590040 + AluJb SINE Alu 50 291 -21 2462 121 56 16 chr4 31698716 31699147 -152589515 + L1MB3 LINE L1 5728 6175 -8 205 211 0 0 chr4 31699362 31699400 -152589262 - L2 LINE L2 -8 3305 3268 770 213 23 6 chr4 31700466 31700640 -152588022 - Charlie1 DNA MER1_type -197 2564 2388 432 55 0 0 chr4 31700642 31700697 -152587965 + (TA)n Simple_repeat Simple_repeat 1 55 0 37490 85 9 7 chr4 31700697 31706820 -152581842 - L1PA6 LINE L1 -7 6147 11 180 0 0 0 chr4 31706825 31706845 -152581817 + (T)n Simple_repeat Simple_repeat 1 20 0 1959 118 15 0 chr4 31706990 31707262 -152581400 + AluSx SINE Alu 23 298 -14 1131 284 203 50 chr4 31707284 31708664 -152579998 - L2 LINE L2 -43 3270 1686 421 151 9 9 chr4 31708672 31708778 -152579884 + (TA)n Simple_repeat Simple_repeat 2 107 0 825 149 0 8 chr4 31710372 31710506 -152578156 - FLAM_C SINE Alu 0 133 1 261 86 0 0 chr4 31711377 31711412 -152577250 - L1MC4a LINE L1 -980 6828 6794 733 263 61 49 chr4 31711529 31711776 -152576886 + MIR SINE MIR 13 262 0 310 258 0 14 chr4 31711896 31711996 -152576666 - L1MC4 LINE L1 0 8034 7898 1571 246 82 34 chr4 31712015 31712601 -152576061 - L1MC4 LINE L1 -323 7719 7106 470 216 60 9 chr4 31712749 31712865 -152575797 - L1MC4 LINE L1 -995 7047 6926 1603 194 42 52 chr4 31712982 31713385 -152575277 - L1MC4a LINE L1 -968 6840 6442 206 370 41 0 chr4 31714687 31714760 -152573902 - L2 LINE L2 -20 3252 3177 2119 105 0 29 chr4 31714802 31715108 -152573554 - AluSx SINE Alu -15 297 1 21 82 0 0 chr4 31715692 31715741 -152572921 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr4 31715988 31716016 -152572646 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 31716228 31716250 -152572412 + AT_rich Low_complexity Low_complexity 1 22 0 713 280 28 36 chr4 31716468 31716718 -152571944 + MIR SINE MIR 15 262 0 393 276 71 12 chr4 31718371 31718541 -152570121 + MIR SINE MIR 28 207 -55 318 342 48 80 chr4 31718583 31718896 -152569766 - L2 LINE L2 -45 3227 2925 222 344 189 28 chr4 31719012 31719224 -152569438 + MIR SINE MIR 9 254 -8 1949 149 0 0 chr4 31719395 31719677 -152568985 - AluSx SINE Alu -30 282 1 8440 145 30 5 chr4 31719733 31722161 -152566501 + L1MA4 LINE L1 3816 6300 0 187 236 91 18 chr4 31722202 31722257 -152566405 - MIR SINE MIR -129 79 21 267 141 16 0 chr4 31722525 31722585 -152566077 + L1PB3 LINE L1 6082 6147 -7 293 357 175 11 chr4 31722701 31722875 -152565787 - L2 LINE L2 -7 3306 3162 541 161 205 18 chr4 31722875 31722987 -152565675 + FLAM_C SINE Alu 1 133 0 293 357 175 11 chr4 31722987 31723190 -152565472 - L2 LINE L2 -151 3162 2867 761 285 102 70 chr4 31724499 31724972 -152563690 + L2 LINE L2 2160 2647 -667 397 288 219 45 chr4 31725124 31725457 -152563205 + L2 LINE L2 2883 3273 -40 22 35 0 0 chr4 31726361 31726390 -152562272 + AT_rich Low_complexity Low_complexity 1 29 0 398 250 84 32 chr4 31726419 31726580 -152562082 - MIR SINE MIR -50 212 43 35 41 0 0 chr4 31726670 31726719 -152561943 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr4 31727140 31727168 -152561494 + AT_rich Low_complexity Low_complexity 1 28 0 356 243 97 48 chr4 31728097 31728200 -152560462 - L2 LINE L2 0 3272 3165 537 259 120 6 chr4 31728391 31728549 -152560113 + MIR SINE MIR 12 187 -75 2332 72 0 7 chr4 31729073 31729365 -152559297 + AluSc SINE Alu 1 290 -19 24 77 0 0 chr4 31729597 31729649 -152559013 + AT_rich Low_complexity Low_complexity 1 52 0 575 221 97 45 chr4 31732013 31732167 -152556495 - MER20 DNA MER1_type -57 162 1 1105 187 114 35 chr4 31734093 31734382 -152554280 - MLT1D LTR MaLR 0 505 194 288 318 9 28 chr4 31734385 31734492 -152554170 - MIR SINE MIR -68 140 36 510 245 127 63 chr4 31735270 31735507 -152553155 - MIR SINE MIR 0 262 11 299 67 0 0 chr4 31737759 31737804 -152550858 - AluSc SINE Alu -4 295 251 200 184 20 0 chr4 31737923 31737972 -152550690 + CT-rich Low_complexity Low_complexity 2 51 0 22 56 0 0 chr4 31739037 31739073 -152549589 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr4 31739641 31739664 -152548998 + AT_rich Low_complexity Low_complexity 1 23 0 212 276 77 74 chr4 31739914 31740031 -152548631 + MIR SINE MIR 4 117 -91 2204 99 20 0 chr4 31740612 31740906 -152547756 + AluSg SINE Alu 1 300 -10 472 296 101 20 chr4 31741838 31742183 -152546479 - L1ME LINE L1 -426 5736 5364 271 313 175 21 chr4 31742376 31742804 -152545858 - L1ME LINE L1 -1096 5050 4557 553 274 49 46 chr4 31743091 31743376 -152545286 - L1ME LINE L1 -1983 4163 3878 248 255 123 39 chr4 31743456 31743587 -152545075 - L1ME LINE L1 -2380 3766 3620 1823 137 29 44 chr4 31743587 31743929 -152544733 + MER44D DNA MER2_type 2 608 -1 248 255 123 39 chr4 31743929 31743949 -152544713 - L1ME LINE L1 -2526 3620 3603 486 283 64 72 chr4 31743977 31744228 -152544434 + MIR SINE MIR 2 250 -12 758 260 126 55 chr4 31744394 31745470 -152543192 - L1ME LINE L1 -2715 3431 2279 1042 275 90 73 chr4 31745941 31747201 -152541461 - L1MEd LINE L1 -833 1657 282 205 396 86 30 chr4 31747253 31747556 -152541106 - L2 LINE L2 -2701 613 294 2621 203 43 25 chr4 31748517 31749122 -152539540 - MLT1E3 LTR MaLR -8 616 1 245 56 0 0 chr4 31750125 31750161 -152538501 - Alu SINE Alu -6 294 259 538 349 29 11 chr4 31750421 31750596 -152538066 - MIR3 SINE MIR -17 191 14 861 284 159 22 chr4 31751579 31752301 -152536361 - L2 LINE L2 0 3313 2486 680 245 104 37 chr4 31755788 31756163 -152532499 - L1ME4a LINE L1 -3 6118 5719 822 162 78 22 chr4 31756181 31756360 -152532302 - MIR SINE MIR -11 251 63 374 384 73 0 chr4 31757055 31757219 -152531443 - L2 LINE L2 -1 3271 3096 219 299 154 13 chr4 31758972 31759200 -152529462 + L2 LINE L2 2799 3084 -188 898 183 17 17 chr4 31759235 31759410 -152529252 - AluJb SINE Alu -2 310 136 2047 88 19 53 chr4 31759430 31759748 -152528914 - AluSx SINE Alu -3 309 3 341 139 51 51 chr4 31759751 31759830 -152528832 - AluJb SINE Alu -160 142 64 227 250 204 64 chr4 31759847 31760019 -152528643 + L2 LINE L2 3118 3313 0 188 220 77 88 chr4 31760625 31760716 -152527946 - L2 LINE L2 -783 2531 2442 293 279 71 123 chr4 31760774 31761100 -152527562 - MLT1J LTR MaLR -202 309 1 195 222 0 0 chr4 31761157 31761202 -152527460 + (TG)n Simple_repeat Simple_repeat 1 45 0 811 267 106 32 chr4 31761250 31761598 -152527064 - L2 LINE L2 -15 3298 2925 448 319 64 10 chr4 31761856 31762060 -152526602 + MIR SINE MIR 12 226 -36 2167 60 70 3 chr4 31762495 31762780 -152525882 - AluY SINE Alu -7 304 1 191 380 41 41 chr4 31763121 31763392 -152525270 + L2 LINE L2 1469 1739 -1575 307 268 146 0 chr4 31763450 31763573 -152525089 - LTR37B LTR ERV1 -63 405 265 451 272 34 7 chr4 31763715 31763862 -152524800 - LTR37B LTR ERV1 -313 155 5 14396 149 46 17 chr4 31764371 31765752 -152522910 - L1PB1 LINE L1 -1 6866 5527 1837 133 21 0 chr4 31765752 31766082 -152522580 - AluSq SINE Alu 0 336 1 14396 149 46 17 chr4 31766082 31770244 -152518418 - L1PB1 LINE L1 -1340 5527 1034 2427 68 0 0 chr4 31770244 31770540 -152518122 - AluY SINE Alu -15 296 1 14396 149 46 17 chr4 31770540 31771605 -152517057 - L1PB1 LINE L1 -5833 1034 1 282 298 58 25 chr4 31772017 31772138 -152516524 - MER31-int LTR ERV1 -973 3963 3839 238 116 116 0 chr4 31772427 31772447 -152516215 - MER58A DNA MER1_type -2196 224 208 1875 27 0 0 chr4 31772447 31772666 -152515996 - L1PA3 LINE L1 0 6155 5937 238 116 116 0 chr4 31772666 31772688 -152515974 - MER58A DNA MER1_type -2212 208 177 1001 84 0 0 chr4 31772691 31772822 -152515840 - AluSc SINE Alu -9 300 170 463 83 0 0 chr4 31772822 31772882 -152515780 - AluSc SINE Alu -108 201 142 479 285 38 54 chr4 31772882 31773068 -152515594 - MER58A DNA MER1_type -40 184 2 401 284 5 109 chr4 31774457 31774668 -152513994 + MER58C DNA MER1_type 27 215 0 1335 267 71 86 chr4 31774759 31775912 -152512750 + L1MEc LINE L1 714 1849 -4547 729 148 0 0 chr4 31775968 31776076 -152512586 - FLAM_C SINE Alu -31 112 5 1118 287 54 29 chr4 31776084 31776422 -152512240 + L1MEc LINE L1 1836 2164 -4051 2012 112 79 0 chr4 31776422 31776700 -152511962 + AluSg SINE Alu 1 300 -10 1118 287 54 29 chr4 31776700 31777193 -152511469 + L1MEc LINE L1 2164 2647 -3568 2269 103 0 0 chr4 31777894 31778185 -152510477 + AluSq SINE Alu 1 291 -22 383 0 0 21 chr4 31778191 31778239 -152510423 + (TAA)n Simple_repeat Simple_repeat 2 48 0 461 289 60 0 chr4 31778478 31778627 -152510035 + Charlie8 DNA MER1_type 6 163 -2254 354 213 0 0 chr4 31780145 31780220 -152508442 - MER117 DNA MER1_type -115 82 8 2125 158 36 124 chr4 31780307 31780704 -152507958 + LTR32 LTR ERVL 15 361 -110 2072 122 7 0 chr4 31780704 31780990 -152507672 + AluSx SINE Alu 1 288 -24 2125 158 36 124 chr4 31780990 31781093 -152507569 + LTR32 LTR ERVL 361 471 0 1584 128 0 0 chr4 31781671 31781897 -152506765 - AluSg/x SINE Alu -3 309 84 2021 118 17 0 chr4 31782410 31782699 -152505963 - AluSx SINE Alu -18 294 1 195 42 0 0 chr4 31783713 31783737 -152504925 + (TG)n Simple_repeat Simple_repeat 1 24 0 1467 262 108 6 chr4 31787988 31788477 -152500185 + MLT1H LTR MaLR 11 549 0 2335 21 68 0 chr4 31788664 31788945 -152499717 - L1PA4 LINE L1 -2 6153 5854 241 257 0 54 chr4 31788945 31789008 -152499654 + LTR33 LTR ERVL 118 178 -343 279 279 21 71 chr4 31789514 31789654 -152499008 + MIR SINE MIR 60 192 -70 480 306 28 52 chr4 31790526 31790778 -152497884 + MIR SINE MIR 17 262 0 1682 186 3 13 chr4 31791354 31791661 -152497001 + AluJb SINE Alu 1 304 -8 993 241 111 26 chr4 31791801 31792313 -152496349 + MLT1F1 LTR MaLR 1 542 0 1121 198 57 0 chr4 31792621 31792833 -152495829 - MER58A DNA MER1_type 0 224 1 624 174 0 0 chr4 31793124 31793233 -152495429 + MER45B DNA AcHobo 727 835 -205 2332 108 0 10 chr4 31793534 31793841 -152494821 - AluSx SINE Alu -8 304 1 4427 191 38 65 chr4 31793855 31794245 -152494417 - MER45B DNA AcHobo -548 1033 634 1968 163 0 0 chr4 31794245 31794552 -152494110 - AluJo SINE Alu -5 307 1 4427 191 38 65 chr4 31794552 31794744 -152493918 - MER45B DNA AcHobo -947 634 438 1764 188 92 45 chr4 31794744 31795190 -152493472 - MLT1C LTR MaLR 0 467 1 4427 191 38 65 chr4 31795190 31795501 -152493161 - MER45B DNA AcHobo -1143 438 168 2083 97 83 0 chr4 31795501 31795790 -152492872 + AluSq SINE Alu 1 313 0 4427 191 38 65 chr4 31795790 31795923 -152492739 - MER45B DNA AcHobo -1413 168 33 2161 183 95 12 chr4 31795935 31796357 -152492305 + LTR32 LTR ERVL 15 471 0 913 211 57 38 chr4 31797012 31797464 -152491198 - MLT1H LTR MaLR 0 549 3 1852 139 18 4 chr4 31797713 31797994 -152490668 - AluJb SINE Alu -3 309 25 224 348 30 22 chr4 31798015 31798150 -152490512 - MER5A DNA MER1_type -7 182 47 388 274 10 0 chr4 31798467 31798569 -152490093 + MER5A DNA MER1_type 3 105 -84 239 286 139 8 chr4 31800344 31800610 -152488052 + L1ME LINE L1 4923 5223 -923 43540 35 21 2 chr4 31800642 31806707 -152481955 - L1PA2 LINE L1 0 6155 1 930 261 22 86 chr4 31806708 31806875 -152481787 + L1ME LINE L1 5270 5446 -724 2160 129 0 7 chr4 31806875 31807184 -152481478 + AluSx SINE Alu 1 307 -5 930 261 22 86 chr4 31807184 31807480 -152481182 + L1ME LINE L1 5446 5703 -467 267 175 0 0 chr4 31807483 31807540 -152481122 + (TA)n Simple_repeat Simple_repeat 1 57 0 372 300 87 10 chr4 31807549 31807775 -152480887 + L1MC4a LINE L1 5665 5909 -284 657 235 63 126 chr4 31808272 31808685 -152479977 + MLT1L LTR MaLR 229 615 0 2026 133 0 7 chr4 31809947 31810257 -152478405 - AluSx SINE Alu 0 308 1 217 228 236 8 chr4 31810273 31810400 -152478262 - MIR SINE MIR -1 261 106 245 370 56 6 chr4 31812286 31812448 -152476214 + MIR3 SINE MIR 32 201 -7 265 267 33 44 chr4 31813215 31813305 -152475357 + MLT1K LTR MaLR 211 299 -289 288 91 0 0 chr4 31813670 31813714 -152474948 + (TCCA)n Simple_repeat Simple_repeat 3 46 0 341 308 33 0 chr4 31813715 31813835 -152474827 - L2 LINE L2 -8 3264 3141 1366 218 80 32 chr4 31813843 31814285 -152474377 - MLT1C LTR MaLR -3 590 1 240 324 32 50 chr4 31814592 31814811 -152473851 - L2 LINE L2 -424 2890 2676 246 250 228 0 chr4 31816160 31816296 -152472366 + L1ME LINE L1 5650 5816 -305 787 217 66 45 chr4 31816576 31816774 -152471888 - L1MB5 LINE L1 -6 6168 5967 533 276 129 13 chr4 31816967 31817199 -152471463 + MIR SINE MIR 2 260 -2 4175 98 2 0 chr4 31817463 31818015 -152470647 - MER41A LTR ERV1 -1 553 1 371 256 17 34 chr4 31818024 31818141 -152470521 - L3 LINE CR1 -392 1185 1071 972 262 80 43 chr4 31818340 31818825 -152469837 + L2 LINE L2 2809 3311 -2 1125 203 155 19 chr4 31818849 31819165 -152469497 + MER90 LTR ERV1 1 359 -216 597 167 0 0 chr4 31819196 31819298 -152469364 - L1MCa LINE L1 -5678 748 647 697 230 59 21 chr4 31819309 31819496 -152469166 + MER90 LTR ERV1 407 600 -14 4003 154 11 33 chr4 31819788 31820515 -152468147 - MER50 LTR ERV1 -23 711 1 211 274 0 0 chr4 31820642 31820693 -152467969 - L2 LINE L2 -11 3302 3252 330 182 68 34 chr4 31821876 31821964 -152466698 - L1MC2 LINE L1 -32 6312 6222 1718 129 4 0 chr4 31821964 31822212 -152466450 - AluJb SINE Alu -14 298 50 718 179 8 0 chr4 31822214 31822337 -152466325 - AluJo/FLAM SINE Alu -187 125 2 741 201 83 6 chr4 31822338 31822507 -152466155 - L1MC2 LINE L1 -114 6230 6049 252 313 26 35 chr4 31823653 31823768 -152464894 - MIR SINE MIR -114 148 35 1892 109 0 8 chr4 31823883 31824149 -152464513 + L1PA8A LINE L1 5864 6127 -4 379 231 9 46 chr4 31824227 31824335 -152464327 - MIR SINE MIR -71 191 88 569 261 17 19 chr4 31824470 31824649 -152464013 - MIR SINE MIR -67 141 16 373 261 130 19 chr4 31824658 31824784 -152463878 - MER5B DNA MER1_type -5 184 37 203 305 17 0 chr4 31825160 31825219 -152463443 + MIR3 SINE MIR 95 154 -54 527 231 58 8 chr4 31825299 31825420 -152463242 + L2 LINE L2 3187 3313 0 332 282 40 24 chr4 31825417 31825541 -152463121 + MER5A DNA MER1_type 64 189 0 * 459 272 32 8 chr4 31826238 31826363 -152462299 + MER5B DNA MER1_type 7 134 -44 470 168 30 10 chr4 31826452 31826553 -152462109 - L1MC2 LINE L1 0 6344 6242 213 39 0 0 chr4 31827317 31827343 -152461319 + (TAA)n Simple_repeat Simple_repeat 1 26 0 651 278 17 17 chr4 31827524 31827704 -152460958 + MIR3 SINE MIR 16 195 -13 188 290 72 0 chr4 31827776 31827845 -152460817 - L2 LINE L2 -3225 89 16 2010 177 85 11 chr4 31827851 31828286 -152460376 + MLT1C LTR MaLR 1 467 0 218 286 29 67 chr4 31828310 31828415 -152460247 + MIR SINE MIR 161 261 -1 217 192 39 0 chr4 31828415 31828467 -152460195 + GA-rich Low_complexity Low_complexity 3 56 0 296 257 112 84 chr4 31828486 31828665 -152459997 - MIR SINE MIR -19 189 3 285 29 0 0 chr4 31828708 31828742 -152459920 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 296 102 20 0 chr4 31829173 31829222 -152459440 + (CATCC)n Simple_repeat Simple_repeat 3 52 0 199 163 23 0 chr4 31829414 31829457 -152459205 - L2 LINE L2 -345 2968 2925 1654 244 28 13 chr4 31830297 31830757 -152457905 - MLT1C LTR MaLR 0 467 1 288 71 47 39 chr4 31830970 31831097 -152457565 + HERV17 LTR ERV1 706 833 -7793 21 0 0 0 chr4 31832026 31832047 -152456615 + AT_rich Low_complexity Low_complexity 1 21 0 272 244 59 59 chr4 31832722 31832841 -152455821 + L2 LINE L2 2641 2759 -555 567 236 0 0 chr4 31832845 31832955 -152455707 + MLT2C1 LTR ERVL 248 357 -40 207 211 33 22 chr4 31832959 31833049 -152455613 + (CATATA)n Simple_repeat Simple_repeat 4 94 0 285 109 0 0 chr4 31833078 31833124 -152455538 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 320 51 0 0 chr4 31833127 31833166 -152455496 + MLT2C1 LTR ERVL 357 395 -2 1141 278 72 69 chr4 31833224 31833766 -152454896 + MLT1G1 LTR MaLR 49 595 0 545 292 65 6 chr4 31833808 31833976 -152454686 + L2 LINE L2 3134 3311 -2 184 141 22 76 chr4 31834000 31834092 -152454570 + CT-rich Low_complexity Low_complexity 3 89 0 2090 112 3 3 chr4 31834211 31834507 -152454155 + AluSq SINE Alu 1 296 -17 694 266 3 121 chr4 31835400 31835690 -152452972 - L2 LINE L2 -8 3264 3009 1864 156 23 0 chr4 31835690 31835991 -152452671 + AluSx SINE Alu 1 308 -4 15411 52 32 0 chr4 31835991 31838650 -152450012 + L1PA6 LINE L1 3445 6135 -19 465 19 0 0 chr4 31838650 31838704 -152449958 + (TA)n Simple_repeat Simple_repeat 1 54 0 228 35 0 0 chr4 31838705 31838734 -152449928 + (GA)n Simple_repeat Simple_repeat 2 30 0 318 50 0 0 chr4 31838812 31838852 -152449810 + (GA)n Simple_repeat Simple_repeat 1 40 0 220 291 18 0 chr4 31839832 31839887 -152448775 - L2 LINE L2 -7 3265 3210 387 175 0 25 chr4 31840356 31840436 -152448226 + MLT1K LTR MaLR 493 570 -18 1976 157 63 23 chr4 31841033 31841355 -152447307 + MLT1A1 LTR MaLR 1 340 -25 2563 101 30 52 chr4 31841355 31841762 -152446900 - MER48 LTR ERV1 0 398 1 1976 157 63 23 chr4 31841762 31841790 -152446872 + MLT1A1 LTR MaLR 340 365 0 25 0 0 0 chr4 31842890 31842915 -152445747 + AT_rich Low_complexity Low_complexity 1 25 0 566 143 65 39 chr4 31843013 31843167 -152445495 - MER96B DNA MER1_type? -20 397 240 1966 142 70 25 chr4 31843321 31843680 -152444982 - THE1C LTR MaLR 0 375 1 478 250 183 6 chr4 31843744 31843924 -152444738 - MIR SINE MIR -36 226 15 257 316 168 57 chr4 31843961 31844205 -152444457 - L3 LINE CR1 -5 1572 1302 281 333 113 21 chr4 31844393 31844534 -152444128 + L2 LINE L2 3110 3263 -9 283 298 8 73 chr4 31844630 31844754 -152443908 + MIR SINE MIR 20 135 -127 687 265 82 8 chr4 31846130 31846522 -152442140 + LTR33 LTR ERVL 47 519 -2 658 294 95 47 chr4 31846607 31847019 -152441643 - L2 LINE L2 -1 3312 2870 2322 99 0 0 chr4 31847019 31847332 -152441330 + AluSq SINE Alu 1 313 0 658 294 95 47 chr4 31847332 31847534 -152441128 - L2 LINE L2 -443 2870 2679 1464 18 0 0 chr4 31848262 31848430 -152440232 - L1PA4 LINE L1 0 6155 5988 1883 18 14 0 chr4 31848430 31848648 -152440014 + L1PA4 LINE L1 5639 5859 -296 260 149 21 0 chr4 31848883 31848930 -152439732 + L2 LINE L2 3225 3272 0 562 231 31 38 chr4 31849083 31849243 -152439419 - MIR SINE MIR -76 186 28 711 264 25 0 chr4 31849511 31849670 -152438992 + MIR SINE MIR 88 250 -12 240 35 0 0 chr4 31849679 31849708 -152438954 + (TCC)n Simple_repeat Simple_repeat 3 31 0 253 271 86 0 chr4 31849714 31849784 -152438878 + L2 LINE L2 3007 3082 -190 218 274 0 0 chr4 31849870 31849921 -152438741 + (CATA)n Simple_repeat Simple_repeat 1 51 0 250 337 12 0 chr4 31849932 31850018 -152438644 + L2 LINE L2 3182 3268 -4 210 71 0 0 chr4 31850656 31850684 -152437978 + (A)n Simple_repeat Simple_repeat 1 28 0 2091 131 50 34 chr4 31850896 31851254 -152437408 - THE1B LTR MaLR 0 364 1 2939 165 48 91 chr4 31852592 31853423 -152435239 + MER4E LTR ERV1 1 903 0 405 211 266 0 chr4 31853607 31853735 -152434927 + MER5A DNA MER1_type 10 171 -18 3451 152 8 2 chr4 31853902 31854430 -152434232 + LTR26B LTR ERV1 1 531 0 1830 134 7 13 chr4 31854517 31854815 -152433847 - AluJb SINE Alu -16 296 1 539 144 0 0 chr4 31905004 31905094 -152383568 + AluY SINE Alu 213 302 -9 2464 125 17 6 chr4 31905394 31905754 -152382908 - THE1B LTR MaLR 0 364 1 1488 156 11 40 chr4 31906155 31906431 -152382231 + MLT2B3 LTR ERVL 1 268 -286 989 152 0 33 chr4 31906421 31906605 -152382057 + MLT2B2 LTR ERVL 336 513 -2 * 1054 168 59 9 chr4 31906606 31906826 -152381836 - LTR47B LTR ERVL 0 443 213 711 156 23 23 chr4 31907666 31907794 -152380868 - FLAM_A SINE Alu -5 128 1 1787 162 40 0 chr4 31907975 31908277 -152380385 - AluSq SINE Alu 0 313 1 236 313 60 0 chr4 31908732 31908815 -152379847 + MLT1K LTR MaLR 17 104 -484 699 275 110 64 chr4 31908816 31909271 -152379391 + MLT1K LTR MaLR 1 476 0 1012 167 17 0 chr4 31909699 31909879 -152378783 - MLT1A1 LTR MaLR 0 365 183 * 2044 149 29 0 chr4 31909859 31910208 -152378454 + THE1B LTR MaLR 6 364 0 853 187 60 11 chr4 31910215 31910397 -152378265 - MLT1A1 LTR MaLR -162 203 13 213 206 88 44 chr4 31910861 31910929 -152377733 + L2 LINE L2 3233 3303 -10 758 256 0 37 chr4 31911331 31911573 -152377089 + MER106A DNA MER1_type 1 233 -3 277 266 133 41 chr4 31911578 31911796 -152376866 - Charlie8 DNA MER1_type -2167 250 13 294 370 15 0 chr4 31913978 31914113 -152374549 + MIR SINE MIR 109 245 -17 2405 84 0 0 chr4 31914543 31914842 -152373820 - AluY SINE Alu -12 299 1 5868 80 13 18 chr4 31915441 31916831 -152371831 - L1PA10 LINE L1 0 6168 4792 185 77 0 0 chr4 31916961 31916987 -152371675 + L2 LINE L2 3273 3298 -15 827 267 164 9 chr4 31917394 31917735 -152370927 + L2 LINE L2 1879 2272 -1042 1702 196 51 11 chr4 31917842 31918215 -152370447 - LTR32 LTR ERVL -69 402 15 1694 258 140 13 chr4 31918215 31918738 -152369924 + L2 LINE L2 2327 2915 -399 200 274 48 0 chr4 31918734 31918796 -152369866 + L2 LINE L2 3249 3313 0 * 823 123 7 7 chr4 31918797 31918943 -152369719 + (GGAA)n Simple_repeat Simple_repeat 2 147 0 379 300 29 21 chr4 31919967 31920107 -152368555 + MIR SINE MIR 20 160 -102 358 255 29 29 chr4 31920820 31920922 -152367740 - MIR SINE MIR -157 105 4 3080 225 47 4 chr4 31921163 31922104 -152366558 + L1M4 LINE L1 2423 3403 -2743 491 144 0 10 chr4 31922144 31922241 -152366421 + L1MB7 LINE L1 6089 6184 0 504 211 48 81 chr4 31923507 31923716 -152364946 - MLT1K LTR MaLR -61 527 326 3944 106 0 4 chr4 31923901 31924430 -152364232 + MER1A DNA MER1_type 1 527 0 2196 127 3 0 chr4 31924781 31925089 -152363573 - AluSx SINE Alu -3 309 1 2135 62 0 0 chr4 31926148 31926405 -152362257 + AluY SINE Alu 45 301 -10 1644 175 3 52 chr4 31926626 31926934 -152361728 - AluJo SINE Alu -19 293 1 1786 128 56 0 chr4 31927485 31927789 -152360873 - MER83C LTR ERV1 -3 370 50 1038 227 76 67 chr4 31928163 31928517 -152360145 - MLT1C LTR MaLR 0 467 107 2129 142 0 0 chr4 31928517 31928826 -152359836 - AluSx SINE Alu -3 309 1 1038 227 76 67 chr4 31928826 31928934 -152359728 - MLT1C LTR MaLR -360 107 1 2298 101 3 3 chr4 31929017 31929324 -152359338 - AluY SINE Alu -4 307 1 1812 192 3 3 chr4 31929783 31930095 -152358567 - AluJb SINE Alu 0 312 1 2441 80 0 22 chr4 31930503 31930816 -152357846 + AluY SINE Alu 1 306 -5 30 83 0 0 chr4 31931255 31931327 -152357335 + AT_rich Low_complexity Low_complexity 1 72 0 748 274 118 44 chr4 31931498 31931634 -152357028 - L2 LINE L2 -1 3312 3187 2634 87 3 43 chr4 31931634 31931676 -152356986 - THE1C LTR MaLR 0 375 333 2243 107 0 16 chr4 31931676 31931984 -152356678 + AluY SINE Alu 9 311 0 2634 87 3 43 chr4 31931984 31932332 -152356330 - THE1C LTR MaLR -42 333 1 748 274 118 44 chr4 31932332 31932560 -152356102 - L2 LINE L2 -126 3187 2921 24 53 0 0 chr4 31933650 31933688 -152354974 + AT_rich Low_complexity Low_complexity 1 38 0 279 54 0 0 chr4 31933693 31933730 -152354932 + (TG)n Simple_repeat Simple_repeat 2 38 0 213 121 0 0 chr4 31934438 31934471 -152354191 + (TTTC)n Simple_repeat Simple_repeat 1 33 0 186 189 0 0 chr4 31935095 31935132 -152353530 + (TG)n Simple_repeat Simple_repeat 1 37 0 545 238 19 62 chr4 31935468 31935628 -152353034 + MIR SINE MIR 13 165 -97 316 296 24 32 chr4 31935695 31935820 -152352842 + MLT2E LTR ERVL 32 155 -473 185 327 20 20 chr4 31936149 31936250 -152352412 + MIR SINE MIR 159 259 -3 269 247 90 11 chr4 31936391 31936480 -152352182 + MIR SINE MIR 142 237 -25 2087 94 0 62 chr4 31938725 31939034 -152349628 - AluSx SINE Alu -22 290 1 1918 142 62 30 chr4 31939753 31940126 -152348536 + Tigger2 DNA MER2_type 2334 2718 0 222 114 57 29 chr4 31940139 31940244 -152348418 + (TA)n Simple_repeat Simple_repeat 1 108 0 28 61 0 0 chr4 31940301 31940350 -152348312 + AT_rich Low_complexity Low_complexity 1 49 0 236 152 30 40 chr4 31940396 31940495 -152348167 + (TA)n Simple_repeat Simple_repeat 1 98 0 24 0 0 0 chr4 31940508 31940532 -152348130 + AT_rich Low_complexity Low_complexity 1 24 0 2488 66 0 0 chr4 31940533 31940838 -152347824 + AluY SINE Alu 1 305 -6 213 273 18 18 chr4 31940878 31940933 -152347729 - MIR SINE MIR -63 145 91 414 304 9 9 chr4 31941444 31941559 -152347103 - MIR3 SINE MIR -11 197 83 1460 203 0 30 chr4 31941626 31941897 -152346765 + AluJb SINE Alu 1 263 -49 293 229 16 0 chr4 31941927 31941988 -152346674 - MER81 DNA DNA -52 62 1 227 260 20 0 chr4 31942116 31942166 -152346496 + L2 LINE L2 3263 3313 0 351 272 119 55 chr4 31943246 31943448 -152345214 - MIR SINE MIR 0 262 48 199 340 0 20 chr4 31943960 31944010 -152344652 - L2 LINE L2 -86 3186 3138 204 211 0 0 chr4 31944141 31944179 -152344483 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 268 335 102 36 chr4 31944529 31944804 -152343858 - L2 LINE L2 -598 2716 2424 403 288 91 8 chr4 31945566 31945698 -152342964 - MIR3 SINE MIR -7 201 59 6628 223 32 38 chr4 31945815 31945916 -152342746 - L1MB1 LINE L1 -14 5999 5899 2349 98 0 0 chr4 31945916 31946213 -152342449 - AluSq SINE Alu -16 297 1 6628 223 32 38 chr4 31946213 31946891 -152341771 - L1MB1 LINE L1 -114 5899 5219 2207 103 31 0 chr4 31946891 31947182 -152341480 - AluSq SINE Alu -13 300 1 6628 223 32 38 chr4 31947182 31949210 -152339452 - L1MB1 LINE L1 -794 5219 3203 1482 259 70 2 chr4 31949212 31949725 -152338937 - L1MB1 LINE L1 -4668 1223 676 813 304 34 52 chr4 31949912 31950300 -152338362 - L1MB1 LINE L1 -5507 384 4 527 156 52 0 chr4 31950374 31950470 -152338192 - HY1 scRNA scRNA -5 107 7 804 290 71 12 chr4 31950529 31950867 -152337795 - LTR16C LTR ERVL 0 491 134 1060 261 117 52 chr4 31951290 31951981 -152336681 + L2 LINE L2 2557 3313 0 675 298 50 30 chr4 31952132 31952460 -152336202 + L3 LINE CR1 1198 1576 -1 2534 37 20 0 chr4 31952784 31953081 -152335581 + AluY SINE Alu 1 303 -8 208 318 0 0 chr4 31953265 31953328 -152335334 - MER5A DNA MER1_type -83 106 44 2313 102 6 10 chr4 31954013 31954327 -152334335 + AluSq SINE Alu 1 313 0 368 303 46 14 chr4 31955026 31955569 -152333093 + L1ME4a LINE L1 5485 6119 -2 257 276 26 0 chr4 31955811 31955887 -152332775 - MLT1I LTR MaLR -13 396 319 3022 36 6 0 chr4 31955929 31956293 -152332369 - L1PA4 LINE L1 0 6155 5790 6775 47 10 8 chr4 31956395 31957309 -152331353 - L1P LINE L1 -2569 3577 2659 2106 112 0 3 chr4 31957309 31957594 -152331068 - AluSq SINE Alu -29 284 1 6775 47 10 8 chr4 31957594 31957615 -152331047 - L1P LINE L1 -3487 2659 2640 282 300 208 0 chr4 31957739 31957869 -152330793 - MLT1I LTR MaLR -249 160 4 316 228 76 11 chr4 31959281 31959373 -152329289 + MLT1L LTR MaLR 1 98 -517 406 277 116 40 chr4 31959522 31959800 -152328862 + MLT1J LTR MaLR 224 602 -13 2218 167 86 2 chr4 31959800 31960195 -152328467 + MSTC LTR MaLR 1 428 0 406 277 116 40 chr4 31960195 31960211 -152328451 + MLT1J LTR MaLR 602 615 0 569 366 88 12 chr4 31960222 31960686 -152327976 + L2 LINE L2 2514 3018 -254 * 622 283 158 22 chr4 31960678 31961000 -152327662 - L2 LINE L2 -870 2444 2079 397 356 0 0 chr4 31961061 31961179 -152327483 + L2 LINE L2 3150 3267 -5 632 265 53 97 chr4 31961539 31962085 -152326577 - MER34 LTR ERV1 0 542 20 2531 107 3 27 chr4 31962085 31962458 -152326204 - THE1B LTR MaLR 0 364 1 632 265 53 97 chr4 31962458 31962478 -152326184 - MER34 LTR ERV1 -522 20 1 530 158 0 11 chr4 31962590 31962684 -152325978 + MLT1B LTR MaLR 1 93 -297 2399 136 24 24 chr4 31962684 31963103 -152325559 - MSTC LTR MaLR 0 428 10 1042 195 62 33 chr4 31963112 31963474 -152325188 + MLT1B LTR MaLR 89 390 0 207 275 18 64 chr4 31963475 31963584 -152325078 - MIR SINE MIR -72 190 87 1285 249 80 56 chr4 31963736 31964274 -152324388 - MLT1E LTR MaLR -7 586 36 409 210 129 32 chr4 31964290 31964414 -152324248 - MIR SINE MIR -125 137 2 978 226 37 5 chr4 31964560 31964777 -152323885 - MER58A DNA MER1_type 0 224 1 7465 33 2 0 chr4 31965447 31967064 -152321598 + L1PA3 LINE L1 4536 6155 0 220 103 23 92 chr4 31967295 31967382 -152321280 + (TTATA)n Simple_repeat Simple_repeat 1 81 0 21 36 0 0 chr4 31967553 31967581 -152321081 + AT_rich Low_complexity Low_complexity 1 28 0 1383 149 5 5 chr4 31968647 31968868 -152319794 + AluSg/x SINE Alu 84 304 -8 393 247 240 32 chr4 31969127 31969281 -152319381 + MER5A DNA MER1_type 4 189 0 267 245 94 50 chr4 31969485 31969644 -152319018 + HAL1b LINE L1 748 913 -435 300 282 9 45 chr4 31969687 31969797 -152318865 + HAL1b LINE L1 797 902 -446 665 155 0 8 chr4 31970604 31970737 -152317925 + L1MC2 LINE L1 5981 6116 -221 1366 183 125 12 chr4 31971467 31971795 -152316867 - MLT1A1 LTR MaLR 0 365 1 2647 144 2 7 chr4 31971931 31972367 -152316295 - MER57B LTR ERV1 0 434 1 407 222 20 10 chr4 31973462 31973561 -152315101 - MIR SINE MIR -39 223 124 217 295 0 0 chr4 31973556 31973617 -152315045 + MIR SINE MIR 94 154 -108 * 22 0 0 0 chr4 31973631 31973653 -152315009 + AT_rich Low_complexity Low_complexity 1 22 0 1726 47 9 9 chr4 31973653 31973866 -152314796 + AluY SINE Alu 91 303 -8 246 32 0 0 chr4 31973867 31973898 -152314764 + (TA)n Simple_repeat Simple_repeat 2 32 0 1266 274 63 61 chr4 31974942 31975050 -152313612 + MLT1E LTR MaLR 5 111 -482 2961 160 41 8 chr4 31975050 31975586 -152313076 + MER41C LTR ERV1 1 554 0 1266 274 63 61 chr4 31975586 31975665 -152312997 + MLT1E LTR MaLR 111 188 -405 2135 116 27 3 chr4 31975665 31975966 -152312696 - AluSq SINE Alu 0 313 6 1266 274 63 61 chr4 31975966 31976365 -152312297 + MLT1E LTR MaLR 188 593 0 39 22 0 0 chr4 31976420 31976466 -152312196 + AT_rich Low_complexity Low_complexity 1 46 0 2002 129 7 0 chr4 31976477 31976757 -152311905 - AluSx SINE Alu -30 282 1 27 0 0 0 chr4 31976891 31976918 -152311744 + AT_rich Low_complexity Low_complexity 1 27 0 326 347 47 35 chr4 31977013 31977183 -152311479 - MIR3 SINE MIR -32 176 5 183 273 30 30 chr4 31978169 31978235 -152310427 + L2 LINE L2 2995 3060 -212 376 323 114 6 chr4 31978296 31978454 -152310208 + MIR SINE MIR 2 176 -86 553 299 70 15 chr4 31978512 31978713 -152309949 - MIR SINE MIR -19 243 32 3839 181 32 17 chr4 31979581 31980754 -152307908 + L1MB4 LINE L1 4919 6109 -71 23 0 0 0 chr4 31980766 31980789 -152307873 + AT_rich Low_complexity Low_complexity 1 23 0 2018 117 0 4 chr4 31981818 31982092 -152306570 + AluSx SINE Alu 29 301 -11 186 103 0 0 chr4 31982302 31982331 -152306331 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 208 339 61 74 chr4 31983041 31983271 -152305391 + MIR SINE MIR 25 251 -11 227 296 23 45 chr4 31983277 31983365 -152305297 - MIR SINE MIR -155 107 22 1536 162 52 11 chr4 31984248 31984612 -152304050 - MER3 DNA MER1_type 0 2624 2246 280 169 84 12 chr4 31984620 31984703 -152303959 - MER3 DNA MER1_type -41 168 80 704 263 67 10 chr4 31986307 31986516 -152302146 - MIR SINE MIR -25 237 17 385 188 157 133 chr4 31986524 31986578 -152302084 + HAL1b LINE L1 580 631 -717 1590 187 96 3 chr4 31986578 31986910 -152301752 + MLT1A1 LTR MaLR 1 363 -2 385 188 157 133 chr4 31986910 31986991 -152301671 + HAL1b LINE L1 631 709 -639 1928 172 0 7 chr4 31986991 31987293 -152301369 + AluJb SINE Alu 9 308 -4 846 78 0 0 chr4 31987301 31987416 -152301246 + (GGAA)n Simple_repeat Simple_repeat 3 117 0 385 188 157 133 chr4 31987416 31987690 -152300972 + HAL1b LINE L1 715 1009 -339 230 307 0 11 chr4 31988179 31988267 -152300395 - MLT1I LTR MaLR -236 173 87 467 262 12 30 chr4 31988985 31989149 -152299513 - MER97a DNA MER1_type? -732 162 2 3251 286 69 14 chr4 31989177 31990505 -152298157 + L2 LINE L2 1746 3146 -167 227 224 45 0 chr4 31990530 31990597 -152298065 - L1M4 LINE L1 -2242 3904 3835 644 204 67 80 chr4 31990638 31990863 -152297799 + L2 LINE L2 3092 3313 0 2292 146 48 26 chr4 31991041 31991459 -152297203 - MSTA LTR MaLR -1 427 1 696 307 14 5 chr4 31992200 31992415 -152296247 + MIR SINE MIR 46 262 0 188 83 0 28 chr4 31992530 31992566 -152296096 + (CAAAA)n Simple_repeat Simple_repeat 5 39 0 445 285 42 7 chr4 31993320 31993464 -152295198 + MIR SINE MIR 46 194 -68 966 205 51 9 chr4 31993759 31993974 -152294688 - MLT1C LTR MaLR 0 467 244 911 191 37 48 chr4 31993982 31994289 -152294373 - MLT1B LTR MaLR -155 235 1 627 42 32 0 chr4 31994450 31994545 -152294117 + (TCTA)n Simple_repeat Simple_repeat 4 101 0 21 36 0 0 chr4 31995815 31995843 -152292819 + AT_rich Low_complexity Low_complexity 1 28 0 342 0 0 0 chr4 31997238 31997276 -152291386 + (TTA)n Simple_repeat Simple_repeat 3 40 0 3388 57 4 50 chr4 31997277 31997755 -152290907 - L1PA7 LINE L1 -19 6135 5680 22 0 0 0 chr4 31997930 31997952 -152290710 + AT_rich Low_complexity Low_complexity 1 22 0 382 244 23 0 chr4 31998068 31998154 -152290508 + L2 LINE L2 3222 3309 -4 1386 189 85 74 chr4 31998876 31999335 -152289327 + MER31B LTR ERV1 3 466 0 198 0 0 0 chr4 31999568 31999590 -152289072 + (T)n Simple_repeat Simple_repeat 1 22 0 208 163 0 23 chr4 32000790 32000833 -152287829 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 180 0 0 0 chr4 32001729 32001749 -152286913 + (TTA)n Simple_repeat Simple_repeat 2 21 0 26 0 0 0 chr4 32002253 32002279 -152286383 + AT_rich Low_complexity Low_complexity 1 26 0 234 0 0 0 chr4 32003308 32003334 -152285328 + (T)n Simple_repeat Simple_repeat 1 26 0 25 31 0 0 chr4 32003450 32003482 -152285180 + AT_rich Low_complexity Low_complexity 1 32 0 237 250 28 28 chr4 32004126 32004198 -152284464 - MIR3 SINE MIR -18 190 119 921 143 42 37 chr4 32004412 32004601 -152284061 + THE1C LTR MaLR 1 190 -185 530 164 214 50 chr4 32004736 32004895 -152283767 + THE1C LTR MaLR 180 364 0 516 277 54 127 chr4 32005527 32006098 -152282564 - L2 LINE L2 -1 3312 2791 1233 221 178 72 chr4 32006098 32006586 -152282076 + MLT1F LTR MaLR 1 540 -2 516 277 54 127 chr4 32006586 32006620 -152282042 - L2 LINE L2 -522 2791 2756 2002 140 0 41 chr4 32006948 32007262 -152281400 - AluSx SINE Alu -11 301 1 624 148 0 52 chr4 32007861 32007996 -152280666 - L1MA9 LINE L1 -300 6012 5885 337 294 32 121 chr4 32009165 32009447 -152279215 + MIR SINE MIR 6 262 0 263 263 0 0 chr4 32010295 32010352 -152278310 - L2 LINE L2 0 3313 3257 310 376 31 12 chr4 32010816 32010978 -152277684 + L2 LINE L2 2611 2775 -539 481 313 101 10 chr4 32012032 32012230 -152276432 - MIR SINE MIR -28 234 19 22 56 0 0 chr4 32013648 32013684 -152274978 + AT_rich Low_complexity Low_complexity 1 36 0 337 268 62 0 chr4 32014866 32014963 -152273699 - MIR SINE MIR 0 262 160 6283 31 2 0 chr4 32015818 32016897 -152271765 - L1P2 LINE L1 -478 5677 4598 633 221 11 33 chr4 32016997 32017178 -152271484 + L1MC1 LINE L1 6138 6314 -19 1652 182 18 0 chr4 32017264 32017550 -152271112 - AluJo SINE Alu -21 291 1 1796 160 0 36 chr4 32017580 32017699 -152270963 + AluSx SINE Alu 1 123 -189 2136 134 3 13 chr4 32017699 32018006 -152270656 - AluSq SINE Alu -9 304 1 1796 160 0 36 chr4 32018006 32018192 -152270470 + AluSx SINE Alu 123 295 -17 312 278 11 0 chr4 32018485 32018575 -152270087 - MER117 DNA MER1_type -40 157 67 2076 144 36 30 chr4 32019869 32020231 -152268431 - THE1B LTR MaLR 0 364 1 503 113 14 0 chr4 32020482 32020553 -152268109 + AluS SINE Alu 3 74 -239 421 330 39 17 chr4 32020855 32021034 -152267628 + L3b LINE CR1 1283 1465 -118 2218 111 0 10 chr4 32021685 32021982 -152266680 + AluSx SINE Alu 1 294 -18 469 246 91 69 chr4 32021994 32022123 -152266539 + MLT1J1 LTR MaLR 8 148 -302 643 240 44 16 chr4 32022123 32022306 -152266356 + MER5A DNA MER1_type 2 189 0 469 246 91 69 chr4 32022306 32022398 -152266264 + MLT1J1 LTR MaLR 148 237 -213 281 321 6 6 chr4 32022833 32022947 -152265715 + MIR SINE MIR 46 159 -49 183 313 192 28 chr4 32022936 32023150 -152265512 - L2 LINE L2 -74 3239 2991 * 1109 253 29 12 chr4 32023574 32023989 -152264673 - L1MCc LINE L1 -3593 3348 2927 845 277 42 40 chr4 32023992 32024512 -152264150 - L1MCc LINE L1 -4191 2931 2411 635 285 80 36 chr4 32024515 32025235 -152263427 - L1MCc LINE L1 -4887 1536 1129 572 311 59 50 chr4 32025544 32026000 -152262662 - L1MCc LINE L1 -5943 480 21 208 213 11 128 chr4 32027125 32027219 -152261443 + L2 LINE L2 3136 3218 -54 405 337 47 17 chr4 32027454 32027626 -152261036 + L2 LINE L2 3128 3304 -9 180 77 0 0 chr4 32027627 32027653 -152261009 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 676 288 64 13 chr4 32028287 32028520 -152260142 + LTR16A1 LTR ERVL 213 457 0 340 259 9 52 chr4 32029449 32029565 -152259097 + MLT1L LTR MaLR 90 200 -415 342 330 51 35 chr4 32029622 32029819 -152258843 - L3 LINE CR1 -551 1026 827 2273 92 0 32 chr4 32030554 32030870 -152257792 + AluSx SINE Alu 4 309 -3 304 317 10 39 chr4 32030928 32031136 -152257526 + L1ME LINE L1 5143 5344 -802 340 312 68 44 chr4 32031158 32031274 -152257388 + L1ME LINE L1 5366 5491 -671 1477 206 36 36 chr4 32031274 32031639 -152257023 + MLT1A1 LTR MaLR 1 365 0 340 312 68 44 chr4 32031639 32031727 -152256935 + L1ME LINE L1 5491 5575 -587 1250 165 5 0 chr4 32031743 32031943 -152256719 + AluJo SINE Alu 3 203 -109 345 100 36 45 chr4 32032243 32032353 -152256309 + (TA)n Simple_repeat Simple_repeat 2 110 0 319 320 65 20 chr4 32032356 32032556 -152256106 + L1ME LINE L1 5616 5824 -297 1065 275 67 26 chr4 32032588 32032930 -152255732 + L2 LINE L2 2958 3313 0 344 333 18 0 chr4 32032955 32033066 -152255596 + LTR16A LTR ERVL 338 450 0 759 189 0 0 chr4 32033145 32033272 -152255390 + LTR16A LTR ERVL 241 367 -83 25 0 0 0 chr4 32034647 32034672 -152253990 + AT_rich Low_complexity Low_complexity 1 25 0 338 203 43 0 chr4 32035051 32035120 -152253542 - MLT-int LTR MaLR -988 747 676 3057 207 16 36 chr4 32035255 32035665 -152252997 - MLT1A2-int LTR MaLR -1075 660 267 2029 144 3 0 chr4 32035665 32035963 -152252699 - AluSx SINE Alu -8 304 6 3057 207 16 36 chr4 32035963 32036224 -152252438 - MLT1A2-int LTR MaLR -1468 267 2 1177 206 187 9 chr4 32036225 32036541 -152252121 - MLT1A2 LTR MaLR -2 372 1 216 158 0 0 chr4 32037443 32037481 -152251181 + (TG)n Simple_repeat Simple_repeat 1 38 0 1963 153 51 56 chr4 32037974 32038366 -152250296 + MLT1B LTR MaLR 1 390 0 835 200 48 0 chr4 32038901 32039046 -152249616 + FRAM SINE Alu 1 151 -25 736 259 175 37 chr4 32039918 32040404 -152248258 - MLT1H1 LTR MaLR -2 553 1 1949 170 7 58 chr4 32040434 32040845 -152247817 - MLT1B LTR MaLR 0 390 1 440 353 69 34 chr4 32041009 32041329 -152247333 + MLT1K LTR MaLR 194 524 -64 2100 131 0 28 chr4 32041558 32041879 -152246783 + AluSx SINE Alu 1 312 0 236 53 26 0 chr4 32041889 32041927 -152246735 + (TC)n Simple_repeat Simple_repeat 2 40 0 867 220 6 0 chr4 32042465 32042638 -152246024 + LTR47B LTR ERVL 1 174 -269 2023 226 155 44 chr4 32042763 32043670 -152244992 - MLT1A1-int LTR MaLR -229 1506 453 930 251 27 5 chr4 32043673 32043892 -152244770 - MLT1A1-int LTR MaLR -1510 225 2 1107 210 23 101 chr4 32043895 32044291 -152244371 - MLT1A1 LTR MaLR 0 365 1 747 223 43 103 chr4 32046753 32047103 -152241559 - MER68 LTR ERV1 -77 485 157 563 298 50 59 chr4 32047277 32047820 -152240842 - HAL1 LINE L1 -857 1650 1113 1333 300 134 29 chr4 32047824 32048342 -152240320 - L2 LINE L2 -43 3270 2808 1921 113 10 0 chr4 32048342 32048633 -152240029 - L1PA14 LINE L1 -4 6157 5864 1333 300 134 29 chr4 32048633 32049010 -152239652 - L2 LINE L2 -505 2808 2273 335 235 93 25 chr4 32049053 32049215 -152239447 - L1M4 LINE L1 -822 5324 5152 26 64 0 0 chr4 32049986 32050033 -152238629 + AT_rich Low_complexity Low_complexity 1 47 0 338 319 92 25 chr4 32050275 32050513 -152238149 - L1M4 LINE L1 -2742 3404 3151 27 29 0 0 chr4 32050851 32050885 -152237777 + AT_rich Low_complexity Low_complexity 1 34 0 1682 170 3 35 chr4 32051441 32051899 -152236763 - AluSx SINE Alu 0 452 4 393 245 53 32 chr4 32052268 32052478 -152236184 - L1MEd LINE L1 -4862 1257 1130 2143 96 3 25 chr4 32053212 32053526 -152235136 - AluSc SINE Alu 0 309 3 359 355 35 0 chr4 32053617 32053758 -152234904 + LTR33 LTR ERVL 51 196 -325 269 227 0 30 chr4 32053992 32054058 -152234604 + LTR33 LTR ERVL 458 521 0 27 0 0 0 chr4 32054127 32054154 -152234508 + AT_rich Low_complexity Low_complexity 1 27 0 481 289 72 119 chr4 32054298 32054851 -152233811 - L1MEd LINE L1 -5581 538 12 225 98 24 0 chr4 32056069 32056110 -152232552 + L1MC4a LINE L1 6133 6174 -1634 1617 189 7 26 chr4 32056133 32056439 -152232223 + AluJo SINE Alu 3 302 -10 787 294 82 23 chr4 32056870 32057383 -152231279 + L1MC4a LINE L1 1377 1919 -4621 1717 84 8 4 chr4 32057456 32057706 -152230956 + L1P LINE L1 4976 5226 -920 3336 38 9 7 chr4 32057719 32058140 -152230522 + L1PA8 LINE L1 5746 6167 -5 526 290 194 14 chr4 32058142 32058507 -152230155 + L1MC4a LINE L1 1963 2393 -4328 2057 278 71 18 chr4 32058599 32059795 -152228867 + L1MC4a LINE L1 3352 4611 -1929 29 28 0 0 chr4 32059939 32059975 -152228687 + AT_rich Low_complexity Low_complexity 1 36 0 346 263 39 39 chr4 32060539 32060820 -152227842 + L1MC4a LINE L1 6026 6194 -321 2104 177 30 13 chr4 32060826 32061222 -152227440 + MER57A LTR ERV1 1 403 0 810 216 44 20 chr4 32063158 32063362 -152225300 + MER3 DNA MER1_type 1 209 0 831 264 17 25 chr4 32063551 32063786 -152224876 - MIR SINE MIR 0 262 30 2196 102 0 0 chr4 32064530 32064814 -152223848 - AluSg SINE Alu -26 284 1 597 288 17 23 chr4 32065255 32065432 -152223230 + MLT1K LTR MaLR 290 465 -123 1731 101 0 0 chr4 32065660 32065878 -152222784 - AluSc SINE Alu -91 218 1 223 323 20 10 chr4 32066803 32066902 -152221760 - MIR SINE MIR 0 262 163 273 260 128 94 chr4 32067211 32067476 -152221186 - MLT1I LTR MaLR -8 401 128 366 304 174 13 chr4 32067564 32067794 -152220868 - MLT1J1 LTR MaLR -174 272 6 610 318 75 46 chr4 32067915 32068327 -152220335 + L2 LINE L2 2302 2725 -589 289 146 0 54 chr4 32069057 32069113 -152219549 - L1PB4 LINE L1 -2 6154 6105 2186 64 8 0 chr4 32071129 32071393 -152217269 - AluY SINE Alu -17 294 29 484 239 69 38 chr4 32072702 32072861 -152215801 - MIR3 SINE MIR -9 199 36 247 238 127 0 chr4 32073336 32073399 -152215263 - MIR SINE MIR -104 158 88 2239 104 0 3 chr4 32073650 32073959 -152214703 - AluY SINE Alu -3 308 1 367 343 99 37 chr4 32074069 32074451 -152214211 + L2 LINE L2 2550 2955 -359 2189 229 10 6 chr4 32074600 32075089 -152213573 + L1ME1 LINE L1 5433 5923 -243 1064 195 18 12 chr4 32075101 32075146 -152213516 - MER2 DNA MER2_type -9 336 293 22 35 0 0 chr4 32075146 32075175 -152213487 + AT_rich Low_complexity Low_complexity 1 29 0 1064 195 18 12 chr4 32075175 32075398 -152213264 - MER2 DNA MER2_type -52 293 3 512 258 20 48 chr4 32075430 32075685 -152212977 + L1MA10 LINE L1 5946 6334 0 575 289 127 38 chr4 32075952 32076291 -152212371 - MLT1J2 LTR MaLR 0 450 82 505 263 70 66 chr4 32076838 32077221 -152211441 + MLT1J LTR MaLR 27 476 -35 2101 132 3 0 chr4 32077785 32078081 -152210581 + AluSg SINE Alu 1 297 -13 246 278 61 91 chr4 32078268 32078466 -152210196 - MIR SINE MIR -50 212 21 581 281 44 0 chr4 32078536 32078727 -152209935 + MIR SINE MIR 15 213 -49 327 349 27 27 chr4 32079026 32079172 -152209490 - L2 LINE L2 0 3272 3127 402 320 33 28 chr4 32079802 32079983 -152208679 - MIR SINE MIR -78 184 3 283 280 28 28 chr4 32079999 32080106 -152208556 + L1P LINE L1 5318 5424 -742 878 232 21 11 chr4 32080118 32080308 -152208354 - MER58A DNA MER1_type -32 192 1 23 33 0 0 chr4 32080317 32080347 -152208315 + AT_rich Low_complexity Low_complexity 1 30 0 210 195 39 0 chr4 32080716 32080793 -152207869 + GA-rich Low_complexity Low_complexity 3 82 0 706 284 31 5 chr4 32081073 32081267 -152207395 + MIR SINE MIR 46 244 -18 2014 91 4 0 chr4 32081313 32081566 -152207096 + AluSx SINE Alu 1 254 -58 499 269 107 0 chr4 32081693 32081842 -152206820 + MIR SINE MIR 21 185 -77 422 320 33 0 chr4 32084198 32084351 -152204311 - MIR SINE MIR -58 204 47 1966 143 76 29 chr4 32086344 32086617 -152202045 + THE1B LTR MaLR 1 295 -69 2228 112 0 3 chr4 32086617 32086913 -152201749 - AluSg SINE Alu -15 295 1 1966 143 76 29 chr4 32086913 32086982 -152201680 + THE1B LTR MaLR 295 359 -5 934 279 54 54 chr4 32087096 32087455 -152201207 + MLT1G1 LTR MaLR 1 423 -172 195 286 48 16 chr4 32087562 32087625 -152201037 - MIR SINE MIR -121 87 23 430 233 98 15 chr4 32089085 32089218 -152199444 + MIR SINE MIR 30 173 -89 22 0 0 0 chr4 32089358 32089380 -152199282 + AT_rich Low_complexity Low_complexity 1 22 0 2241 123 7 0 chr4 32089410 32089720 -152198942 + AluSx SINE Alu 1 312 0 934 234 22 26 chr4 32091357 32091588 -152197074 - MIR SINE MIR -22 240 11 254 298 199 7 chr4 32091612 32091753 -152196909 - MIR SINE MIR -68 194 27 297 277 39 62 chr4 32091785 32091915 -152196747 + MIR SINE MIR 48 174 -88 2711 122 3 8 chr4 32092992 32093369 -152195293 - THE1C LTR MaLR 0 375 1 11108 107 20 39 chr4 32093369 32094396 -152194266 - THE1C-int LTR MaLR 0 1580 592 2291 115 0 6 chr4 32094396 32094708 -152193954 - AluSg SINE Alu 0 310 1 11108 107 20 39 chr4 32094708 32095290 -152193372 - THE1C-int LTR MaLR -988 592 1 2461 111 35 24 chr4 32095290 32095661 -152193001 - THE1C LTR MaLR 0 375 1 247 258 83 144 chr4 32095898 32096127 -152192535 - MLT1-int LTR MaLR -129 1242 1028 1975 219 20 67 chr4 32096959 32097470 -152191192 + MLT1D LTR MaLR 1 487 -18 2698 129 0 3 chr4 32097638 32098003 -152190659 - THE1B LTR MaLR 0 364 1 859 251 29 14 chr4 32098878 32099085 -152189577 + MER63A DNA MER1_type 1 210 0 3122 168 25 39 chr4 32099101 32099348 -152189314 + LTR69 LTR ERVL 1 250 -338 1945 156 64 22 chr4 32099348 32099708 -152188954 + THE1C LTR MaLR 1 375 0 3122 168 25 39 chr4 32099708 32099743 -152188919 + LTR69 LTR ERVL 250 284 -304 198 0 0 0 chr4 32099743 32099765 -152188897 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 3122 168 25 39 chr4 32099765 32100075 -152188587 + LTR69 LTR ERVL 284 586 -2 292 293 45 27 chr4 32101094 32101306 -152187356 + L1ME LINE L1 5656 5875 -287 232 344 90 8 chr4 32102923 32103045 -152185617 - MIR SINE MIR -100 162 31 180 97 0 0 chr4 32103089 32103120 -152185542 + (TATATG)n Simple_repeat Simple_repeat 4 34 0 185 311 94 57 chr4 32103390 32103496 -152185166 + L2 LINE L2 3199 3308 -5 522 285 140 0 chr4 32104268 32104475 -152184187 + MIR SINE MIR 1 236 -26 1699 207 3 0 chr4 32105669 32105964 -152182698 + AluJb SINE Alu 1 296 -16 356 163 35 23 chr4 32106357 32106443 -152182219 - L1ME4a LINE L1 -9 6112 6026 1839 226 0 29 chr4 32108040 32108416 -152180246 + MLT1A1 LTR MaLR 1 365 0 262 316 120 6 chr4 32108646 32108801 -152179861 + MIR SINE MIR 24 189 -62 1836 145 10 19 chr4 32109360 32109670 -152178992 - MER54B LTR ERVL 0 793 487 * 2119 181 11 8 chr4 32109669 32110033 -152178629 - MER54B LTR ERVL -428 365 1 694 279 110 53 chr4 32110329 32110666 -152177996 + MLT1J2 LTR MaLR 74 429 -21 4511 83 7 0 chr4 32110810 32111375 -152177287 - L1PA8 LINE L1 -3 6169 5601 263 288 0 0 chr4 32111450 32111516 -152177146 + CT-rich Low_complexity Low_complexity 1 66 0 387 348 30 73 chr4 32111516 32111749 -152176913 - L2 LINE L2 -21 3251 3029 183 42 0 0 chr4 32112125 32112149 -152176513 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 259 277 0 53 chr4 32112859 32112953 -152175709 - MIR SINE MIR -20 242 154 220 294 167 10 chr4 32113025 32113127 -152175535 + L2 LINE L2 3155 3272 0 1944 186 17 14 chr4 32114497 32114851 -152173811 + MLT1A1 LTR MaLR 10 364 -1 428 318 0 0 chr4 32114853 32114979 -152173683 - MIR SINE MIR -70 192 67 2218 238 61 23 chr4 32116106 32116714 -152171948 - MLT1E2 LTR MaLR 0 626 3 200 309 99 12 chr4 32116785 32116866 -152171796 - MIR SINE MIR -102 106 19 393 248 115 0 chr4 32116905 32117018 -152171644 - MIR SINE MIR -29 233 108 967 259 55 99 chr4 32117280 32117804 -152170858 + MER34 LTR ERV1 1 501 -41 1840 135 30 76 chr4 32117968 32118365 -152170297 - MER67C LTR ERV1 -242 272 1 557 269 58 53 chr4 32118540 32118919 -152169743 + L1ME4a LINE L1 5735 6115 -6 322 266 32 0 chr4 32119299 32119393 -152169269 + L3 LINE CR1 1392 1488 -89 396 158 0 0 chr4 32119708 32119784 -152168878 + GA-rich Low_complexity Low_complexity 2 77 0 501 309 68 20 chr4 32120840 32121089 -152167573 - MIR SINE MIR 0 262 2 4537 156 86 28 chr4 32121374 32122155 -152166507 - LTR1B LTR ERV1 0 826 1 2298 197 49 33 chr4 32122208 32122720 -152165942 + MLT2B1 LTR ERVL 1 520 0 184 286 18 18 chr4 32122731 32122787 -152165875 + L2 LINE L2 3213 3268 -4 417 290 226 4 chr4 32123137 32123389 -152165273 - L2 LINE L2 -1 3312 3005 320 349 58 21 chr4 32124045 32124234 -152164428 - MIR SINE MIR -19 243 48 481 273 56 19 chr4 32124755 32124916 -152163746 + MIR3 SINE MIR 27 193 -15 342 313 9 9 chr4 32125208 32125323 -152163339 + MIR SINE MIR 100 214 -48 1159 174 18 54 chr4 32125411 32125635 -152163027 + MER20 DNA MER1_type 4 219 0 845 293 87 44 chr4 32127024 32127437 -152161225 - L2 LINE L2 -1 3312 2882 442 309 39 17 chr4 32127716 32127897 -152160765 - MIR SINE MIR -39 223 39 2320 152 31 3 chr4 32128862 32129217 -152159445 - MLT1A1 LTR MaLR 0 365 1 420 264 22 0 chr4 32129789 32129895 -152158767 + MIR SINE MIR 42 156 -52 190 394 8 16 chr4 32131049 32131176 -152157486 - MIR SINE MIR -67 141 16 198 103 0 0 chr4 32131937 32131966 -152156696 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 390 331 40 13 chr4 32132845 32132996 -152155666 - MIR SINE MIR 0 262 108 502 265 76 68 chr4 32133176 32133425 -152155237 - MLT1K LTR MaLR -43 545 295 2094 126 80 37 chr4 32133446 32133795 -152154867 - THE1B LTR MaLR 0 364 1 223 259 0 0 chr4 32134083 32134137 -152154525 + MIR3 SINE MIR 143 196 -12 267 31 0 0 chr4 32135232 32135264 -152153398 + (TA)n Simple_repeat Simple_repeat 2 33 0 2166 105 0 0 chr4 32135264 32135549 -152153113 - AluSq SINE Alu -28 285 1 2250 111 0 0 chr4 32135767 32136064 -152152598 + AluSx SINE Alu 1 297 -15 209 186 0 0 chr4 32136410 32136453 -152152209 + (TGAG)n Simple_repeat Simple_repeat 2 44 0 28 79 0 0 chr4 32138311 32138374 -152150288 + AT_rich Low_complexity Low_complexity 1 63 0 220 259 185 0 chr4 32138942 32139023 -152149639 + MIR SINE MIR 117 212 -50 251 299 34 95 chr4 32139590 32139737 -152148925 - MIR SINE MIR -74 188 51 211 212 96 123 chr4 32140054 32140200 -152148462 + MIR SINE MIR 103 244 -18 1716 191 82 9 chr4 32140677 32141017 -152147645 - MLT1A1 LTR MaLR 0 365 1 308 297 104 25 chr4 32141867 32142069 -152146593 - MIR SINE MIR -12 250 33 270 0 0 0 chr4 32142141 32142171 -152146491 + (TC)n Simple_repeat Simple_repeat 1 30 0 183 129 0 0 chr4 32142822 32142853 -152145809 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 31 0 0 0 chr4 32143286 32143317 -152145345 + AT_rich Low_complexity Low_complexity 1 31 0 338 250 25 0 chr4 32143418 32143498 -152145164 + MLT1L LTR MaLR 195 276 -339 189 243 140 37 chr4 32144796 32144903 -152143759 + MIR3 SINE MIR 90 207 -1 412 300 8 8 chr4 32145391 32145521 -152143141 + MER94 DNA DNA 2 131 -3 180 269 54 43 chr4 32145660 32145753 -152142909 - L3 LINE CR1 -80 1497 1404 711 219 72 75 chr4 32146618 32146757 -152141905 + MLT1J2 LTR MaLR 3 142 -308 2019 140 7 3 chr4 32146757 32147057 -152141605 - AluSx SINE Alu -11 301 1 711 219 72 75 chr4 32147057 32147182 -152141480 + MLT1J2 LTR MaLR 142 266 -184 1006 189 49 0 chr4 32147196 32147381 -152141281 + MER58A DNA MER1_type 12 205 -19 272 217 50 0 chr4 32147440 32147500 -152141162 - MLT1J2 LTR MaLR -129 321 259 283 229 57 0 chr4 32147653 32147723 -152140939 + MLT1J2 LTR MaLR 346 419 -31 310 200 40 27 chr4 32149923 32149998 -152138664 - MER116 DNA Mariner -4 76 1 310 258 55 55 chr4 32150086 32150214 -152138448 + MIR SINE MIR 20 147 -115 219 225 188 0 chr4 32150413 32150493 -152138169 - L2 LINE L2 -6 3266 3172 323 352 120 0 chr4 32151458 32151600 -152137062 - MIR3 SINE MIR -48 160 2 858 282 95 14 chr4 32151752 32152121 -152136541 - MLT1L LTR MaLR -40 575 177 303 274 65 48 chr4 32152861 32152985 -152135677 + MIR SINE MIR 20 145 -117 219 103 0 0 chr4 32152991 32153030 -152135632 + (A)n Simple_repeat Simple_repeat 1 39 0 722 179 0 133 chr4 32153168 32153386 -152135276 + MER53 DNA DNA 1 189 0 22 0 0 0 chr4 32154084 32154106 -152134556 + AT_rich Low_complexity Low_complexity 1 22 0 2026 129 0 19 chr4 32155810 32156120 -152132542 - AluSq SINE Alu -7 306 3 207 146 0 0 chr4 32156538 32156579 -152132083 + (GA)n Simple_repeat Simple_repeat 1 41 0 712 322 83 44 chr4 32157106 32157541 -152131121 - L3 LINE CR1 -1 1576 1125 434 346 54 10 chr4 32157595 32157800 -152130862 - MIR SINE MIR -44 218 5 228 350 0 12 chr4 32157839 32157919 -152130743 - L3 LINE CR1 -488 1089 1011 251 54 0 27 chr4 32158114 32158151 -152130511 + Alu SINE Alu 1 36 -266 1452 121 0 19 chr4 32158663 32158878 -152129784 + AluSg/x SINE Alu 80 290 -20 185 0 40 0 chr4 32158884 32158909 -152129753 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1775 77 0 17 chr4 32159046 32159281 -152129381 - AluSg/x SINE Alu 0 312 82 291 125 71 18 chr4 32160009 32160065 -152128597 + MLT1D LTR MaLR 426 484 -21 1916 147 3 7 chr4 32160169 32160461 -152128201 - AluJo SINE Alu -21 291 1 300 253 51 108 chr4 32160516 32160674 -152127988 + MER5A DNA MER1_type 29 188 -1 2350 172 93 25 chr4 32160690 32161149 -152127513 - MLT1D LTR MaLR 0 505 12 1991 171 33 28 chr4 32161149 32161511 -152127151 - THE1B LTR MaLR 0 364 1 2350 172 93 25 chr4 32161511 32161523 -152127139 - MLT1D LTR MaLR -493 12 2 620 196 0 0 chr4 32162449 32162556 -152126106 - MLT1A2 LTR MaLR -4 370 264 277 191 48 16 chr4 32162558 32162621 -152126041 - MLT1A2 LTR MaLR -309 65 1 735 294 39 57 chr4 32163138 32163523 -152125139 - LTR16B LTR ERVL -86 378 1 201 132 0 0 chr4 32163654 32163692 -152124970 + (TCCCC)n Simple_repeat Simple_repeat 5 42 0 224 154 19 0 chr4 32164217 32164269 -152124393 + (TAAA)n Simple_repeat Simple_repeat 3 55 0 1444 237 69 37 chr4 32164463 32164838 -152123824 - MSTD LTR MaLR -4 392 6 288 365 29 0 chr4 32164846 32164983 -152123679 + MIR3 SINE MIR 37 177 -31 183 242 106 30 chr4 32165582 32165648 -152123014 - L2 LINE L2 -16 3256 3186 860 227 66 110 chr4 32166425 32166953 -152121709 - MLT1D LTR MaLR 0 505 1 234 318 40 32 chr4 32167112 32167238 -152121424 + L2 LINE L2 2708 2834 -480 420 158 1 0 chr4 32167259 32167337 -152121325 + L1M2 LINE L1 5464 5545 -579 1742 161 192 8 chr4 32167338 32167692 -152120970 + MSTA LTR MaLR 2 420 -8 1416 82 16 0 chr4 32167693 32167876 -152120786 + L1M2 LINE L1 5539 5724 -576 244 293 13 0 chr4 32168180 32168255 -152120407 + L2 LINE L2 3235 3310 -3 44127 31 21 1 chr4 32169098 32175130 -152113532 - L1PA2 LINE L1 0 6155 1 4831 105 7 50 chr4 32175746 32176470 -152112192 - L1PA11 LINE L1 0 6174 5482 4253 160 52 33 chr4 32176583 32177385 -152111277 + L1MB1 LINE L1 5303 6123 -45 2407 55 0 48 chr4 32177385 32177695 -152110967 + AluY SINE Alu 1 295 -16 4253 160 52 33 chr4 32177695 32177737 -152110925 + L1MB1 LINE L1 6123 6163 -5 296 271 35 83 chr4 32179154 32179298 -152109364 - MER5A DNA MER1_type -1 188 52 710 307 40 80 chr4 32179617 32179814 -152108848 + L2 LINE L2 2804 3007 -306 2313 91 10 0 chr4 32179814 32180112 -152108550 - AluSc SINE Alu -8 301 1 710 307 40 80 chr4 32180112 32180387 -152108275 + L2 LINE L2 3007 3257 -56 710 194 145 54 chr4 32180734 32180920 -152107742 - MIR SINE MIR -9 253 51 822 308 43 69 chr4 32181058 32181519 -152107143 - LTR67 LTR ERVL 0 557 109 906 236 90 97 chr4 32182120 32182696 -152105966 + Charlie8 DNA MER1_type 87 658 -1759 2048 196 27 46 chr4 32182919 32183393 -152105269 + MLT1C LTR MaLR 3 467 0 21 36 0 0 chr4 32184238 32184266 -152104396 + AT_rich Low_complexity Low_complexity 1 28 0 805 251 89 52 chr4 32184973 32185526 -152103136 - L1ME3 LINE L1 -332 5830 5258 1532 188 4 11 chr4 32185537 32185803 -152102859 - AluJo SINE Alu -48 264 1 1260 299 116 30 chr4 32185866 32187341 -152101321 - L1ME3 LINE L1 -946 5200 3600 3099 147 0 8 chr4 32187406 32187896 -152100766 - L1PA16 LINE L1 -11 6155 5670 2381 152 26 5 chr4 32187896 32188466 -152100196 + L1PA16 LINE L1 5081 5660 -506 392 283 132 46 chr4 32189362 32189416 -152099246 - L1ME3 LINE L1 -2953 3193 3145 694 182 0 38 chr4 32189416 32189548 -152099114 - FLAM_C SINE Alu -2 131 5 392 283 132 46 chr4 32189548 32189797 -152098865 - L1ME3 LINE L1 -3001 3145 2864 548 256 8 0 chr4 32189866 32189995 -152098667 + MIR SINE MIR 123 252 -10 1909 123 25 7 chr4 32190009 32190286 -152098376 - AluSx SINE Alu -30 282 1 24 67 0 0 chr4 32190897 32190942 -152097720 + AT_rich Low_complexity Low_complexity 1 45 0 497 332 10 48 chr4 32190967 32191175 -152097487 - MIR SINE MIR -55 207 8 265 293 112 17 chr4 32191426 32191542 -152097120 - MIR SINE MIR -129 133 7 288 348 70 37 chr4 32191703 32191890 -152096772 - MIR SINE MIR -51 211 19 1302 271 68 58 chr4 32192443 32192960 -152095702 - MLT1F LTR MaLR -2 540 19 417 292 60 32 chr4 32192969 32193219 -152095443 + L1MEd LINE L1 560 816 -5303 885 294 86 10 chr4 32193277 32193662 -152095000 + HAL1 LINE L1 101 514 -1993 8859 166 6 29 chr4 32193681 32194464 -152094198 + L1P5 LINE L1 3469 4268 -1883 2332 119 0 0 chr4 32194464 32194776 -152093886 + AluSx SINE Alu 1 312 0 8859 166 6 29 chr4 32194776 32196366 -152092296 + L1P5 LINE L1 4268 5784 -367 307 250 10 62 chr4 32196369 32196465 -152092197 - L1MC4 LINE L1 -1340 6702 6612 326 204 27 20 chr4 32196465 32196612 -152092050 + (TA)n Simple_repeat Simple_repeat 1 148 0 2636 105 0 0 chr4 32196666 32197036 -152091626 + L1PB1 LINE L1 5782 6151 0 1730 229 103 28 chr4 32197140 32197722 -152090940 - MLT1E2 LTR MaLR -3 623 11 293 284 59 0 chr4 32198100 32198202 -152090460 - MLT1J2 LTR MaLR -289 161 54 1498 267 44 47 chr4 32198713 32199305 -152089357 + MLT1G LTR MaLR 1 590 0 308 200 111 11 chr4 32199308 32199398 -152089264 + MLT1G-int LTR MaLR 4 102 -1269 256 335 45 25 chr4 32199435 32199677 -152088985 + MLT1G-int LTR MaLR 290 536 -835 250 352 0 0 chr4 32200104 32200192 -152088470 + MLT1G-int LTR MaLR 790 877 -494 2192 99 85 46 chr4 32200516 32200928 -152087734 + MSTA LTR MaLR 1 428 0 276 325 44 9 chr4 32201025 32201139 -152087523 + MLT1G-int LTR MaLR 1253 1370 -1 954 236 101 63 chr4 32201141 32201549 -152087113 + MLT1G LTR MaLR 5 496 -94 2266 158 75 0 chr4 32201549 32201947 -152086715 - MSTC LTR MaLR 0 428 1 954 236 101 63 chr4 32201947 32202046 -152086616 + MLT1G LTR MaLR 496 590 0 1895 175 40 13 chr4 32202255 32202632 -152086030 - MLT1B LTR MaLR -2 388 2 226 179 15 15 chr4 32202689 32202756 -152085906 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 1108 263 87 21 chr4 32205072 32205733 -152082929 + L1ME3 LINE L1 4963 5668 -494 710 220 89 50 chr4 32205713 32205972 -152082690 + L1ME3 LINE L1 5886 6154 -8 * 2048 233 70 11 chr4 32205988 32206515 -152082147 + MER74A LTR ERVL 1 558 0 237 132 0 0 chr4 32206899 32206937 -152081725 + (GGAA)n Simple_repeat Simple_repeat 3 40 0 1587 180 3 41 chr4 32207230 32207524 -152081138 + AluJo SINE Alu 3 285 -27 1945 52 0 4 chr4 32207859 32208107 -152080555 - L1PA5 LINE L1 -2 6152 5906 846 221 47 148 chr4 32208112 32208620 -152080042 - MER110 LTR ERV1 -11 457 1 2399 133 5 19 chr4 32209384 32209753 -152078909 + THE1B LTR MaLR 1 364 0 11179 96 1 66 chr4 32209753 32210123 -152078539 + THE1B-int LTR MaLR 1 393 -1187 667 105 11 0 chr4 32210123 32210289 -152078373 - AluY SINE Alu 0 354 188 11179 96 1 66 chr4 32210289 32211511 -152077151 + THE1B-int LTR MaLR 393 1579 -1 2250 122 28 19 chr4 32211512 32211873 -152076789 + THE1B LTR MaLR 1 364 0 333 198 72 18 chr4 32211916 32212027 -152076635 + L1ME3 LINE L1 6037 6153 -9 971 276 94 10 chr4 32212029 32212326 -152076336 + MER74B LTR ERVL 48 369 -253 23 68 0 0 chr4 32213269 32213313 -152075349 + AT_rich Low_complexity Low_complexity 1 44 0 745 276 11 0 chr4 32213403 32213588 -152075074 - MER58A DNA MER1_type -37 187 1 1614 170 16 52 chr4 32214321 32214627 -152074035 - AluJb SINE Alu -17 295 1 5070 62 3 0 chr4 32214879 32215524 -152073138 - L1PA8 LINE L1 -9 6163 5517 21 57 0 0 chr4 32215580 32215615 -152073047 + AT_rich Low_complexity Low_complexity 1 35 0 257 311 19 75 chr4 32215625 32215755 -152072907 + MER5B DNA MER1_type 54 188 -1 458 331 63 44 chr4 32216660 32217025 -152071637 - L1MCa LINE L1 -4639 1787 1416 1134 241 134 18 chr4 32217075 32217619 -152071043 - L1M4 LINE L1 -1754 4392 3786 739 357 45 34 chr4 32217683 32218322 -152070340 - L1MCa LINE L1 -5631 976 331 23 0 0 0 chr4 32218516 32218539 -152070123 + AT_rich Low_complexity Low_complexity 1 23 0 357 375 58 8 chr4 32220524 32220764 -152067898 - L1M4 LINE L1 -1876 4270 4019 22 0 0 0 chr4 32220784 32220806 -152067856 + AT_rich Low_complexity Low_complexity 1 22 0 444 323 92 57 chr4 32220971 32221780 -152066882 - L1M4 LINE L1 -2375 3771 2935 1784 171 61 6 chr4 32222041 32222385 -152066277 - MLT1A1 LTR MaLR 0 365 3 32 0 0 0 chr4 32222624 32222656 -152066006 + AT_rich Low_complexity Low_complexity 1 32 0 344 285 118 42 chr4 32223709 32223972 -152064690 + L1MEc LINE L1 1921 2203 -4193 536 296 92 12 chr4 32223990 32224416 -152064246 + L1MEc LINE L1 2184 2643 -3572 785 294 140 8 chr4 32224426 32225182 -152063480 + L1MEc LINE L1 3819 4674 -1541 2384 164 42 4 chr4 32225429 32225911 -152062751 + L1MB3 LINE L1 5682 6181 -2 186 71 0 0 chr4 32226080 32226108 -152062554 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 934 346 46 40 chr4 32226224 32226895 -152061767 - L2 LINE L2 -2351 963 289 7352 30 8 0 chr4 32226956 32227839 -152060823 - L1PA3 LINE L1 0 6155 5260 2561 205 34 33 chr4 32228091 32228736 -152059926 + L1MA10 LINE L1 5670 6315 -19 2234 65 0 14 chr4 32229003 32229280 -152059382 - AluY SINE Alu -8 303 31 286 315 56 37 chr4 32229789 32229951 -152058711 - MIR SINE MIR -45 217 53 415 335 49 65 chr4 32230644 32230889 -152057773 - MIR SINE MIR -10 252 12 249 61 0 0 chr4 32231073 32231106 -152057556 - MLT2F LTR ERVL 0 663 631 180 152 0 0 chr4 32231152 32231185 -152057477 + (TG)n Simple_repeat Simple_repeat 2 34 0 1203 217 53 45 chr4 32231194 32231531 -152057131 - MLT2C1 LTR ERVL -57 340 1 181 430 19 9 chr4 32231560 32231667 -152056995 - L2 LINE L2 -212 3060 2953 185 303 0 53 chr4 32231691 32231767 -152056895 + L2 LINE L2 3147 3218 -54 197 340 123 9 chr4 32232121 32232227 -152056435 - MIR SINE MIR -28 234 117 200 351 0 43 chr4 32232408 32232502 -152056160 + MIR SINE MIR 34 123 -85 1538 186 25 6 chr4 32232556 32232910 -152055752 - L1 LINE L1 -1579 4567 4207 4944 177 8 9 chr4 32232911 32233830 -152054832 + L1MA4 LINE L1 5373 6290 -10 468 226 161 26 chr4 32233912 32234067 -152054595 - MIR SINE MIR -6 256 81 304 258 125 16 chr4 32234893 32235077 -152053585 + L1ME LINE L1 5564 5762 -359 444 292 55 58 chr4 32235082 32235445 -152053217 + L1ME LINE L1 2469 2830 -3316 393 328 75 15 chr4 32235459 32235763 -152052899 + L1ME LINE L1 5241 5559 -562 260 252 149 19 chr4 32235834 32235941 -152052721 + L1ME LINE L1 5678 5798 -323 1915 153 33 81 chr4 32236109 32236354 -152052308 + MLT2A2 LTR ERVL 3 258 -296 2295 99 0 22 chr4 32236354 32236666 -152051996 - AluSx SINE Alu -7 305 1 1915 153 33 81 chr4 32236666 32236988 -152051674 + MLT2A2 LTR ERVL 258 554 0 209 105 35 35 chr4 32237158 32237215 -152051447 + CT-rich Low_complexity Low_complexity 4 60 0 1652 107 9 0 chr4 32237477 32237719 -152050943 + AluSc SINE Alu 63 306 0 23 0 0 0 chr4 32237784 32237807 -152050855 + AT_rich Low_complexity Low_complexity 1 23 0 747 203 40 70 chr4 32237852 32238079 -152050583 - L1MA9 LINE L1 0 6312 6093 423 0 0 0 chr4 32239188 32239235 -152049427 + (TG)n Simple_repeat Simple_repeat 2 48 0 349 316 203 0 chr4 32240115 32240248 -152048414 + MIR3 SINE MIR 38 197 -11 746 197 0 0 chr4 32240317 32240449 -152048213 - FLAM_C SINE Alu 0 133 2 821 208 25 0 chr4 32240928 32241087 -152047575 + FAM SINE Alu 1 163 -12 264 149 0 0 chr4 32242027 32242074 -152046588 + (TG)n Simple_repeat Simple_repeat 2 48 0 231 213 9 37 chr4 32243296 32243404 -152045258 + (TATAA)n Simple_repeat Simple_repeat 3 107 0 328 299 51 0 chr4 32243412 32243529 -152045133 - MIR SINE MIR -32 230 108 441 274 86 46 chr4 32243771 32243968 -152044694 - MIR SINE MIR -14 248 44 * 458 301 152 15 chr4 32243955 32244344 -152044318 + L2 LINE L2 1415 1856 -1458 331 224 20 20 chr4 32244568 32244666 -152043996 + CT-rich Low_complexity Low_complexity 3 100 0 494 333 75 17 chr4 32244905 32245265 -152043397 - L1ME LINE L1 -2984 3096 2716 394 322 70 23 chr4 32246079 32246293 -152042369 + MIR SINE MIR 21 244 -18 1739 128 0 0 chr4 32246587 32246853 -152041809 - L1PB1 LINE L1 -7 6144 5879 248 375 121 12 chr4 32247171 32247419 -152041243 + L2 LINE L2 2804 3078 -194 604 241 64 42 chr4 32247521 32247832 -152040830 - L1ME LINE L1 -5176 894 577 457 241 68 119 chr4 32247942 32248178 -152040484 - L1ME LINE L1 -5513 557 334 237 139 0 0 chr4 32248178 32248221 -152040441 + (T)n Simple_repeat Simple_repeat 1 43 0 4112 39 0 0 chr4 32248224 32248715 -152039947 - L1PA3 LINE L1 -3 6152 5662 839 281 35 26 chr4 32248717 32249058 -152039604 - L1ME LINE L1 -5723 347 4 412 300 108 58 chr4 32249192 32249415 -152039247 - MIR SINE MIR 0 262 29 410 39 0 0 chr4 32249773 32249825 -152038837 + MADE1 DNA Mariner 1 52 -28 902 281 90 59 chr4 32251727 32252475 -152036187 - L1MEc LINE L1 -4309 2087 1317 1272 88 56 70 chr4 32252488 32252703 -152035959 - AluY SINE Alu 0 311 100 359 351 45 0 chr4 32252704 32252838 -152035824 + MIR3 SINE MIR 50 189 -19 257 271 62 70 chr4 32253120 32253249 -152035413 - MIR SINE MIR -12 250 123 949 257 159 34 chr4 32253438 32253909 -152034753 - MLT1H LTR MaLR 0 549 20 653 200 0 0 chr4 32254139 32254254 -152034408 + AluJb SINE Alu 186 300 -12 1202 186 15 47 chr4 32254605 32254879 -152033783 + AluJo SINE Alu 39 303 -9 2310 143 17 23 chr4 32255023 32255466 -152033196 - L1MA5 LINE L1 -27 6273 5831 226 261 0 0 chr4 32255727 32255796 -152032866 - MLT1H-int LTR MaLR -904 467 399 335 253 0 11 chr4 32255916 32256003 -152032659 - MLT1H-int LTR MaLR -1277 94 9 678 182 18 0 chr4 32256011 32256153 -152032509 - MLT1H LTR MaLR 0 549 431 358 280 63 21 chr4 32256263 32256406 -152032256 - MLT1H LTR MaLR -387 162 14 1499 295 47 31 chr4 32257077 32257673 -152030989 - MLT1G LTR MaLR -17 573 1 255 194 194 0 chr4 32259299 32259366 -152029296 + MIR SINE MIR 74 153 -109 369 0 0 0 chr4 32259738 32259779 -152028883 + (CA)n Simple_repeat Simple_repeat 2 42 0 2104 98 0 70 chr4 32260028 32260356 -152028306 + AluSc SINE Alu 1 305 -4 302 295 66 16 chr4 32260405 32260588 -152028074 - L2 LINE L2 -1437 1877 1686 744 350 99 4 chr4 32260606 32261069 -152027593 - L2 LINE L2 -1761 1553 1047 603 281 60 36 chr4 32261087 32261336 -152027326 + L2 LINE L2 2177 2431 -883 203 59 0 29 chr4 32261344 32261378 -152027284 + (TCC)n Simple_repeat Simple_repeat 2 34 0 1537 149 0 109 chr4 32261378 32261700 -152026962 - AluJb SINE Alu -21 291 5 24 32 0 0 chr4 32261816 32261847 -152026815 + AT_rich Low_complexity Low_complexity 1 31 0 424 235 0 0 chr4 32262058 32262139 -152026523 - MER21B LTR ERV1 -498 365 285 258 32 0 0 chr4 32262207 32262238 -152026424 + (TG)n Simple_repeat Simple_repeat 2 32 0 1488 135 0 44 chr4 32262239 32262491 -152026171 + MER21A LTR ERV1 24 264 -667 2921 169 37 46 chr4 32262496 32263057 -152025605 + MER21A LTR ERV1 376 931 0 26 64 0 0 chr4 32263151 32263198 -152025464 + AT_rich Low_complexity Low_complexity 1 47 0 218 85 21 43 chr4 32263404 32263451 -152025211 + (TA)n Simple_repeat Simple_repeat 2 47 0 217 292 35 88 chr4 32263468 32263639 -152025023 + L2 LINE L2 3152 3313 0 580 285 142 11 chr4 32263668 32263928 -152024734 - L2 LINE L2 -2301 1013 720 803 280 111 47 chr4 32264183 32264608 -152024054 - MLT1J LTR MaLR -35 476 25 2260 315 68 62 chr4 32264783 32265486 -152023176 + HERV16 LTR ERVL 1601 2317 -2679 428 0 19 0 chr4 32265486 32265538 -152023124 + (CA)n Simple_repeat Simple_repeat 2 54 0 2260 315 68 62 chr4 32265538 32266177 -152022485 + HERV16 LTR ERVL 2317 2951 -2045 232 296 111 0 chr4 32266180 32266288 -152022374 + L3 LINE CR1 298 417 -1160 326 318 23 16 chr4 32266290 32266419 -152022243 + HERV16 LTR ERVL 3099 3228 -2536 2185 338 82 34 chr4 32266491 32268364 -152020298 + HERV16 LTR ERVL 3382 5344 -420 1357 285 22 53 chr4 32268375 32268637 -152020025 - L1ME3A LINE L1 -77 6093 5825 1263 51 0 0 chr4 32268637 32268795 -152019867 - L1PA4 LINE L1 -3 6152 5995 1357 285 22 53 chr4 32268795 32269154 -152019508 - L1ME3A LINE L1 -345 5825 5491 2273 198 19 0 chr4 32269184 32269599 -152019063 + L1MC4a LINE L1 146 568 -5972 2508 90 0 0 chr4 32269792 32270104 -152018558 - AluSx SINE Alu 0 312 1 23 0 0 0 chr4 32270478 32270501 -152018161 + AT_rich Low_complexity Low_complexity 1 23 0 1594 167 91 23 chr4 32272408 32272750 -152015912 + MLT1A1 LTR MaLR 1 365 0 21 57 0 0 chr4 32273726 32273761 -152014901 + AT_rich Low_complexity Low_complexity 1 35 0 1679 174 0 43 chr4 32274587 32274892 -152013770 + AluJo SINE Alu 3 294 -18 2014 112 0 3 chr4 32275116 32275401 -152013261 - AluSx SINE Alu -2 310 27 1549 196 3 28 chr4 32275401 32275716 -152012946 - AluJo SINE Alu -3 309 1 24 32 0 0 chr4 32275778 32275809 -152012853 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr4 32275882 32275915 -152012747 + AT_rich Low_complexity Low_complexity 1 33 0 2076 270 114 52 chr4 32275997 32277151 -152011511 + L1MC4a LINE L1 1254 2336 -4204 2196 164 68 40 chr4 32277151 32277393 -152011269 + LTR64 LTR ERVK 1 235 -278 2134 123 3 0 chr4 32277393 32277695 -152010967 - AluSx SINE Alu -9 303 1 2196 164 68 40 chr4 32277695 32277951 -152010711 + LTR64 LTR ERVK 235 513 0 2076 270 114 52 chr4 32277951 32279105 -152009557 + L1MC4a LINE L1 2336 3728 -2812 724 238 38 11 chr4 32279108 32279293 -152009369 + L1M2a LINE L1 83 272 -6896 * 2688 288 55 11 chr4 32279290 32280105 -152008557 + L1M2a LINE L1 986 1836 -5332 231 58 19 58 chr4 32280158 32280210 -152008452 + (TTTTTA)n Simple_repeat Simple_repeat 4 53 0 315 315 44 49 chr4 32281053 32281440 -152007222 + L1MC4a LINE L1 5101 5485 -1055 1140 240 100 69 chr4 32281614 32282263 -152006399 + L1MC4a LINE L1 5648 6316 -1886 277 285 90 40 chr4 32283094 32283294 -152005368 + L2 LINE L2 3104 3313 0 304 132 44 0 chr4 32283502 32283570 -152005092 + GA-rich Low_complexity Low_complexity 2 72 0 888 219 0 21 chr4 32283717 32283904 -152004758 - MLT1E3 LTR MaLR -387 237 55 1379 164 15 15 chr4 32285190 32285464 -152003198 - HSMAR2 DNA Mariner 0 1302 1029 22528 153 6 12 chr4 32285495 32289509 -151999153 + L1P3 LINE L1 1094 5090 -1371 4005 75 59 41 chr4 32289496 32289773 -151998889 + L1PA8A LINE L1 5487 5758 -373 * 2164 105 3 16 chr4 32289773 32290079 -151998583 + AluSp SINE Alu 5 306 -7 4005 75 59 41 chr4 32290079 32290415 -151998247 + L1PA8A LINE L1 5758 6111 -20 222 37 0 0 chr4 32290726 32290753 -151997909 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 631 149 11 0 chr4 32290753 32290847 -151997815 - FLAM_A SINE Alu -31 111 17 2742 130 18 7 chr4 32290852 32291297 -151997365 - HSMAR2 DNA Mariner -851 451 2 29 0 0 0 chr4 32292676 32292705 -151995957 + AT_rich Low_complexity Low_complexity 1 29 0 283 211 40 34 chr4 32292758 32292933 -151995729 + (TTATA)n Simple_repeat Simple_repeat 5 180 0 455 217 70 0 chr4 32293275 32293390 -151995272 + MER3 DNA MER1_type 48 123 -86 595 185 80 0 chr4 32293402 32293564 -151995098 + MER3 DNA MER1_type 2410 2584 0 181 341 123 24 chr4 32293902 32294072 -151994590 - MIR SINE MIR -55 207 21 342 105 8 20 chr4 32295229 32295298 -151993364 + AluSp/q SINE Alu 249 303 0 1594 167 91 23 chr4 32295566 32295908 -151992754 + MLT1A1 LTR MaLR 1 365 0 21 57 0 0 chr4 32296884 32296919 -151991743 + AT_rich Low_complexity Low_complexity 1 35 0 1649 177 0 46 chr4 32297744 32298049 -151990613 + AluJo SINE Alu 3 293 -19 1211 128 0 0 chr4 32298277 32298457 -151990205 - AluSg/x SINE Alu -2 308 129 324 0 0 0 chr4 32298457 32298493 -151990169 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1801 126 0 7 chr4 32298493 32298764 -151989898 - AluY SINE Alu -32 279 11 2388 75 0 0 chr4 32298825 32299120 -151989542 + AluSc SINE Alu 3 297 -12 224 303 92 13 chr4 32299128 32299204 -151989458 + MIR SINE MIR 16 97 -165 4266 172 47 2 chr4 32300184 32300997 -151987665 + L1MB1 LINE L1 5320 6168 0 1939 121 3 34 chr4 32301006 32301328 -151987334 + AluSx SINE Alu 1 312 0 253 253 101 0 chr4 32301334 32301413 -151987249 + L1MC4 LINE L1 6617 6703 -1339 937 270 123 22 chr4 32301531 32302035 -151986627 - L1ME4a LINE L1 -11 6110 5556 329 85 0 0 chr4 32302056 32302103 -151986559 + MADE1 DNA Mariner 34 80 0 248 343 103 23 chr4 32302196 32302496 -151986166 + L1MEc LINE L1 381 704 -6017 1857 127 0 4 chr4 32302768 32303051 -151985611 - AluSq SINE Alu 0 308 27 1549 196 3 28 chr4 32303051 32303366 -151985296 - AluJo SINE Alu -3 309 1 24 32 0 0 chr4 32303428 32303459 -151985203 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr4 32303532 32303565 -151985097 + AT_rich Low_complexity Low_complexity 1 33 0 2076 270 114 52 chr4 32303647 32304801 -151983861 + L1MEc LINE L1 1254 2336 -4204 2196 164 68 40 chr4 32304801 32305043 -151983619 + LTR64 LTR ERVK 1 235 -278 2134 123 3 0 chr4 32305043 32305345 -151983317 - AluSx SINE Alu -9 303 1 2196 164 68 40 chr4 32305345 32305601 -151983061 + LTR64 LTR ERVK 235 513 0 2076 270 114 52 chr4 32305601 32306755 -151981907 + L1MEc LINE L1 2336 3728 -2812 724 238 38 11 chr4 32306758 32306943 -151981719 + L1M4 LINE L1 83 272 -6896 * 2688 288 55 11 chr4 32306940 32307755 -151980907 + L1M4 LINE L1 986 1836 -5332 231 58 19 58 chr4 32307808 32307860 -151980802 + (TTTTTA)n Simple_repeat Simple_repeat 4 53 0 315 315 44 49 chr4 32308703 32309090 -151979572 + L1M4 LINE L1 5728 6112 -1055 1955 161 0 0 chr4 32309527 32309840 -151978822 + AluSc SINE Alu 1 309 0 516 314 76 30 chr4 32310801 32310982 -151977680 - L2 LINE L2 -8 3305 3134 2228 114 0 16 chr4 32310982 32311299 -151977363 + AluSx SINE Alu 1 312 0 516 314 76 30 chr4 32311299 32311313 -151977349 - L2 LINE L2 -179 3134 3122 2005 172 42 51 chr4 32311313 32311784 -151976878 - MLT1C LTR MaLR 0 467 1 516 314 76 30 chr4 32311784 32312175 -151976487 - L2 LINE L2 -191 3122 2683 23 0 0 0 chr4 32313117 32313140 -151975522 + AT_rich Low_complexity Low_complexity 1 23 0 442 271 0 0 chr4 32313568 32313664 -151974998 - MER81 DNA DNA -1 113 18 7245 42 10 0 chr4 32314086 32315692 -151972970 + L1PA4 LINE L1 4537 6153 -2 277 291 97 36 chr4 32315705 32315901 -151972761 + MIR SINE MIR 53 260 -2 410 286 77 6 chr4 32317291 32317459 -151971203 + MIR SINE MIR 21 200 -62 2177 98 14 0 chr4 32318892 32319187 -151969475 + AluSp SINE Alu 1 299 -14 21 36 0 0 chr4 32322342 32322370 -151966292 + AT_rich Low_complexity Low_complexity 1 28 0 2580 45 0 10 chr4 32322981 32323295 -151965367 + AluY SINE Alu 1 311 0 293 201 26 122 chr4 32323717 32323906 -151964756 - MER112 DNA MER1_type -89 171 1 262 274 39 10 chr4 32324390 32324492 -151964170 + MIR3 SINE MIR 99 203 -5 181 422 0 11 chr4 32324839 32324929 -151963733 - MIR SINE MIR -170 92 4 229 65 0 43 chr4 32327137 32327183 -151961479 + (GAAA)n Simple_repeat Simple_repeat 1 44 0 197 222 16 0 chr4 32327644 32327707 -151960955 + GA-rich Low_complexity Low_complexity 2 65 0 2015 70 0 0 chr4 32327998 32328241 -151960421 + AluY SINE Alu 55 297 -14 266 256 99 45 chr4 32328254 32328593 -151960069 + L1MEd LINE L1 993 1387 -4910 363 220 28 28 chr4 32328755 32328864 -151959798 - LTR16A1 LTR ERVL -2 455 347 449 281 107 15 chr4 32328934 32329204 -151959458 + L1M4 LINE L1 5002 5296 -850 1917 134 0 7 chr4 32329447 32329767 -151958895 + AluSx SINE Alu 9 326 0 238 259 44 114 chr4 32329815 32329973 -151958689 - L2 LINE L2 -3 3269 3123 199 327 111 37 chr4 32330134 32330296 -151958366 - L2 LINE L2 -410 2904 2731 530 298 36 40 chr4 32330796 32331044 -151957618 - HERV16 LTR ERVL -1339 3939 3411 808 271 116 19 chr4 32331223 32331585 -151957077 + MLT2C1 LTR ERVL 1 397 0 1722 341 69 19 chr4 32331688 32333302 -151955360 - HERV16 LTR ERVL -2423 3341 1592 504 246 154 11 chr4 32333343 32333518 -151955144 - HERV16 LTR ERVL -4479 517 318 315 294 182 16 chr4 32333760 32333947 -151954715 - LTR16A LTR ERVL 0 450 233 2038 109 36 3 chr4 32334350 32334653 -151954009 + AluSq SINE Alu 1 313 0 536 279 67 31 chr4 32337446 32337889 -151950773 + MER109 Unknown Unknown 40 1450 -982 469 308 10 36 chr4 32337872 32338067 -151950595 + LTR33 LTR ERVL 332 521 0 * 200 394 0 0 chr4 32338125 32338196 -151950466 + L2 LINE L2 3151 3221 -51 1137 122 70 9 chr4 32338217 32338430 -151950232 + L1MA4 LINE L1 6069 6294 -6 2282 154 3 8 chr4 32338463 32338845 -151949817 - L1PB3 LINE L1 -1 6153 5774 1752 204 40 67 chr4 32339019 32339494 -151949168 + MLT1C LTR MaLR 6 467 0 871 342 82 31 chr4 32339498 32340441 -151948221 - L2 LINE L2 -1 3312 2327 2240 142 20 97 chr4 32340441 32340934 -151947728 - LTR32 LTR ERVL 0 471 17 184 292 31 15 chr4 32340935 32341000 -151947662 - L2 LINE L2 -984 2330 2265 1555 329 75 33 chr4 32341004 32341830 -151946832 - L2 LINE L2 -1537 1777 917 1165 234 24 63 chr4 32341918 32342298 -151946364 - MLT1A1 LTR MaLR 0 365 1 2300 282 93 53 chr4 32343298 32346894 -151941768 + L1MCc LINE L1 19 3828 -3113 453 249 94 11 chr4 32346933 32347114 -151941548 + L1MCc LINE L1 4368 4563 -2378 30 45 0 0 chr4 32347124 32347168 -151941494 + AT_rich Low_complexity Low_complexity 1 44 0 308 286 77 39 chr4 32347180 32347362 -151941300 + L1MCc LINE L1 4553 4741 -2200 1079 223 58 42 chr4 32348115 32348474 -151940188 - MLT1A1 LTR MaLR 0 365 1 859 186 126 5 chr4 32348480 32348679 -151939983 - MLT1A1-int LTR MaLR -7 1728 1506 446 32 143 0 chr4 32348686 32348749 -151939913 + MADE1 DNA Mariner 9 80 0 666 206 8 0 chr4 32348907 32349033 -151939629 - FLAM_A SINE Alu -6 127 1 2504 45 0 3 chr4 32349162 32349473 -151939189 + AluY SINE Alu 1 310 -1 646 238 67 0 chr4 32349556 32349720 -151938942 + MER105 DNA DNA 30 204 0 299 309 122 0 chr4 32349887 32350026 -151938636 - MIR SINE MIR 0 262 107 688 272 64 68 chr4 32350338 32350753 -151937909 - LTR35 LTR ERV1 -55 501 86 22 0 0 0 chr4 32350846 32350868 -151937794 + AT_rich Low_complexity Low_complexity 1 22 0 269 237 17 0 chr4 32351257 32351316 -151937346 + LTR40a LTR ERVL 1 60 -459 4316 172 47 2 chr4 32352391 32353204 -151935458 + L1MB1 LINE L1 5320 6168 0 1869 121 3 37 chr4 32353213 32353536 -151935126 + AluSx SINE Alu 1 312 0 262 253 101 0 chr4 32353542 32353621 -151935041 + L1MC4 LINE L1 6617 6703 -1339 1001 286 111 10 chr4 32353739 32354243 -151934419 - L1ME4a LINE L1 -11 6110 5556 330 85 0 0 chr4 32354264 32354311 -151934351 + MADE1 DNA Mariner 34 80 0 2400 87 0 0 chr4 32354975 32355285 -151933377 - AluSx SINE Alu -2 310 1 227 323 20 10 chr4 32356210 32356309 -151932353 - MIR SINE MIR 0 262 163 276 264 128 94 chr4 32356618 32356883 -151931779 - MLT1I LTR MaLR -8 401 128 372 304 174 13 chr4 32356971 32357201 -151931461 - MLT1J1 LTR MaLR -174 272 6 610 318 75 46 chr4 32357322 32357734 -151930928 + L2 LINE L2 2302 2725 -589 264 30 0 0 chr4 32358275 32358308 -151930354 + (CA)n Simple_repeat Simple_repeat 2 34 0 194 314 0 0 chr4 32359354 32359405 -151929257 + L2 LINE L2 3263 3313 0 23 78 0 0 chr4 32359521 32359572 -151929090 + AT_rich Low_complexity Low_complexity 1 51 0 204 135 0 27 chr4 32359622 32359659 -151929003 + (TTTC)n Simple_repeat Simple_repeat 4 39 0 1428 81 38 9 chr4 32360382 32360593 -151928069 - L1PA12 LINE L1 -1 6167 5951 2004 113 7 3 chr4 32360593 32360895 -151927767 - L1PA12 LINE L1 -132 6036 5734 591 158 0 0 chr4 32360898 32360993 -151927669 + L1PA12 LINE L1 2 96 -7485 212 304 54 11 chr4 32361116 32361208 -151927454 + MIR SINE MIR 98 193 -69 22 56 0 0 chr4 32361276 32361312 -151927350 + AT_rich Low_complexity Low_complexity 1 36 0 422 222 229 13 chr4 32361312 32361465 -151927197 + MIR SINE MIR 72 257 -5 180 321 126 44 chr4 32362604 32362763 -151925899 - L2 LINE L2 -229 3043 2872 212 175 0 0 chr4 32362850 32362890 -151925772 + T-rich Low_complexity Low_complexity 1 40 0 2292 87 0 7 chr4 32363329 32363629 -151925033 - AluY SINE Alu -13 298 1 319 356 57 28 chr4 32363662 32363839 -151924823 + MIR3 SINE MIR 16 197 -11 180 0 0 0 chr4 32364447 32364467 -151924195 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 279 319 6 70 chr4 32364702 32364859 -151923803 - MIR3 SINE MIR -3 205 59 207 0 0 0 chr4 32365434 32365457 -151923205 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 264 329 57 19 chr4 32365700 32365858 -151922804 - MIR SINE MIR 0 262 99 347 201 73 104 chr4 32365895 32366059 -151922603 - MIR SINE MIR -55 207 49 22 80 0 0 chr4 32366378 32366428 -151922234 + AT_rich Low_complexity Low_complexity 1 50 0 4179 136 23 1 chr4 32366805 32367488 -151921174 - L1MA1 LINE L1 0 6302 5605 735 68 9 0 chr4 32367488 32367609 -151921053 + L1 LINE L1 5237 5358 -788 182 266 138 32 chr4 32367716 32367810 -151920852 + L3b LINE CR1 1355 1458 -125 6274 53 1 8 chr4 32367838 32368633 -151920029 + L1PA6 LINE L1 5362 6151 -3 3383 196 120 10 chr4 32370029 32370966 -151917696 + L1MA2 LINE L1 3349 4476 -1670 6420 141 40 1 chr4 32372156 32373921 -151914741 + L1MA2 LINE L1 4458 6297 -7 333 224 0 51 chr4 32374448 32374546 -151914116 - L1MA2 LINE L1 -33 6271 6179 184 333 69 20 chr4 32374745 32374847 -151913815 + MIR3 SINE MIR 57 163 -45 273 371 12 60 chr4 32376371 32376502 -151912160 + MER5A DNA MER1_type 4 127 -62 1831 110 30 0 chr4 32376502 32376765 -151911897 - AluSq SINE Alu -11 302 32 273 371 12 60 chr4 32376765 32376800 -151911862 + MER5A DNA MER1_type 127 162 -27 191 193 35 0 chr4 32377495 32377552 -151911110 + GA-rich Low_complexity Low_complexity 2 60 0 2119 108 3 22 chr4 32377937 32378253 -151910409 + AluSg SINE Alu 1 310 0 291 336 25 16 chr4 32378278 32378400 -151910262 + MIR SINE MIR 32 154 -108 29 0 0 0 chr4 32379957 32379986 -151908676 + AT_rich Low_complexity Low_complexity 1 29 0 287 283 299 6 chr4 32380404 32380581 -151908081 + MIR SINE MIR 34 262 0 22 0 0 0 chr4 32380666 32380688 -151907974 + AT_rich Low_complexity Low_complexity 1 22 0 894 120 7 27 chr4 32380722 32380872 -151907790 - L1PA10 LINE L1 0 6168 6022 302 291 109 86 chr4 32381415 32381800 -151906862 + MLT1K LTR MaLR 187 580 -8 219 260 0 0 chr4 32381960 32382010 -151906652 + (TG)n Simple_repeat Simple_repeat 2 51 0 225 270 16 0 chr4 32382016 32382079 -151906583 - MLT1H LTR MaLR -7 542 479 345 323 65 19 chr4 32382431 32382586 -151906076 + MIR SINE MIR 45 206 -56 25 0 0 0 chr4 32382714 32382739 -151905923 + AT_rich Low_complexity Low_complexity 1 25 0 209 269 74 37 chr4 32382986 32383094 -151905568 + MIR SINE MIR 43 154 -108 286 305 19 19 chr4 32383874 32383979 -151904683 - MLT1J2 LTR MaLR -279 171 67 415 359 41 9 chr4 32384023 32384243 -151904419 + MIR SINE MIR 35 261 -1 221 326 11 79 chr4 32384438 32384616 -151904046 - L2 LINE L2 -298 2974 2809 23 33 0 0 chr4 32384759 32384789 -151903873 + AT_rich Low_complexity Low_complexity 1 30 0 261 211 92 13 chr4 32386016 32386092 -151902570 + MIR SINE MIR 86 167 -95 323 401 77 18 chr4 32387416 32387859 -151900803 - L2 LINE L2 -222 3050 2584 200 386 30 0 chr4 32387921 32388022 -151900640 - MIR3 SINE MIR -38 170 67 366 23 0 0 chr4 32388168 32388211 -151900451 + (ATG)n Simple_repeat Simple_repeat 1 43 0 233 291 106 45 chr4 32388215 32388394 -151900268 - MIR SINE MIR -10 252 63 2076 179 87 0 chr4 32389372 32389764 -151898898 - MSTB LTR MaLR 0 426 1 2339 83 3 25 chr4 32390158 32390472 -151898190 + AluY SINE Alu 1 307 -4 229 146 0 42 chr4 32390473 32390521 -151898141 + MLT1E3 LTR MaLR 563 608 -16 463 198 0 12 chr4 32390681 32390767 -151897895 + Tigger1 DNA MER2_type 4 88 -2330 * 4265 149 14 1 chr4 32390759 32391476 -151897186 + Tigger1 DNA MER2_type 416 1141 -1277 1517 181 203 0 chr4 32391476 32391830 -151896832 + MSTA LTR MaLR 1 426 -2 * 7199 133 27 55 chr4 32391830 32393148 -151895514 + Tigger1 DNA MER2_type 1137 2418 0 2218 182 36 25 chr4 32393818 32394264 -151894398 + MER70A LTR ERVL 22 472 0 21 57 0 0 chr4 32394299 32394334 -151894328 + AT_rich Low_complexity Low_complexity 1 35 0 1929 137 27 48 chr4 32394340 32394712 -151893950 + THE1B LTR MaLR 1 364 0 231 61 0 0 chr4 32396551 32396584 -151892078 + (TC)n Simple_repeat Simple_repeat 1 33 0 378 0 0 0 chr4 32396584 32396626 -151892036 + (TG)n Simple_repeat Simple_repeat 1 42 0 383 82 0 0 chr4 32396794 32396843 -151891819 - L1MA4 LINE L1 -76 6224 6176 257 197 15 0 chr4 32397413 32397479 -151891183 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 559 246 6 23 chr4 32399174 32399349 -151889313 - L1MC4a LINE L1 -1191 6617 6446 192 254 9 18 chr4 32399726 32399836 -151888826 + GA-rich Low_complexity Low_complexity 2 110 0 264 252 16 39 chr4 32399838 32399965 -151888697 + A-rich Low_complexity Low_complexity 2 125 0 607 268 57 0 chr4 32400282 32400439 -151888223 + FRAM SINE Alu 1 166 0 329 262 79 37 chr4 32400628 32400792 -151887870 - L1MC/D LINE L1 -881 5478 5308 27 0 0 0 chr4 32400935 32400962 -151887700 + AT_rich Low_complexity Low_complexity 1 27 0 255 316 68 60 chr4 32402346 32402479 -151886183 + MIR SINE MIR 59 192 -70 662 310 10 0 chr4 32403337 32403534 -151885128 - MIR SINE MIR -57 205 7 226 288 62 10 chr4 32404794 32404898 -151883764 + MIR SINE MIR 21 133 -75 2192 260 16 0 chr4 32405585 32406220 -151882442 + L1M4 LINE L1 4272 4916 -1230 992 355 28 39 chr4 32406228 32406867 -151881795 + L1PA13 LINE L1 788 1419 -6155 292 333 0 0 chr4 32406953 32407052 -151881610 + L1PA13 LINE L1 2084 2182 -5399 5329 185 25 4 chr4 32407109 32408831 -151879831 + L1PA16 LINE L1 4408 6157 -9 1322 252 28 17 chr4 32408845 32409314 -151879348 + L1M4 LINE L1 4906 5379 -767 1252 245 32 42 chr4 32409307 32409739 -151878923 + L1MA10 LINE L1 5879 6306 -28 * 1616 223 17 9 chr4 32409763 32410113 -151878549 + MLT1C LTR MaLR 112 464 -3 803 211 31 12 chr4 32410113 32410329 -151878333 + L1MC3 LINE L1 7432 7859 -136 235 226 65 0 chr4 32410304 32410366 -151878296 + L1MC2 LINE L1 6268 6333 -11 * 330 286 130 23 chr4 32410529 32410875 -151877787 + L1M4 LINE L1 2382 2764 -3382 360 59 0 0 chr4 32411402 32411453 -151877209 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 2162 110 3 0 chr4 32411455 32411747 -151876915 - AluSp SINE Alu -20 293 1 579 29 0 0 chr4 32411749 32411818 -151876844 + (TA)n Simple_repeat Simple_repeat 2 70 0 638 217 0 0 chr4 32411818 32411938 -151876724 - FLAM_C SINE Alu -13 120 1 23 0 0 0 chr4 32412178 32412201 -151876461 + AT_rich Low_complexity Low_complexity 1 23 0 279 250 25 0 chr4 32412796 32412876 -151875786 + L1M4 LINE L1 2683 2764 -3382 553 285 111 49 chr4 32413007 32413509 -151875153 + L1M4 LINE L1 4124 4660 -1486 722 208 0 8 chr4 32413509 32413639 -151875023 + FLAM_A SINE Alu 1 129 -4 24 0 0 0 chr4 32413973 32413997 -151874665 + AT_rich Low_complexity Low_complexity 1 24 0 1804 143 93 15 chr4 32414489 32414832 -151873830 + THE1C LTR MaLR 6 375 0 363 44 0 0 chr4 32416442 32416487 -151872175 + (TG)n Simple_repeat Simple_repeat 2 46 0 674 286 48 0 chr4 32416522 32416749 -151871913 + LTR16A1 LTR ERVL 213 450 -7 435 353 12 0 chr4 32416914 32417084 -151871578 - MIR SINE MIR -10 252 81 279 0 0 0 chr4 32417471 32417502 -151871160 + (T)n Simple_repeat Simple_repeat 1 31 0 26 0 0 0 chr4 32418080 32418106 -151870556 + AT_rich Low_complexity Low_complexity 1 26 0 496 273 153 10 chr4 32418138 32418530 -151870132 + L1M4 LINE L1 4115 4562 -1584 574 275 163 0 chr4 32418690 32418930 -151869732 - Charlie2 DNA MER1_type -728 2134 1856 811 316 25 19 chr4 32418932 32419255 -151869407 - Charlie2 DNA MER1_type -2457 325 1 267 303 49 19 chr4 32420434 32420596 -151868066 - L1M4 LINE L1 -2211 3935 3769 399 179 26 0 chr4 32420596 32420674 -151867988 + MADE1 DNA Mariner 1 80 0 783 267 55 71 chr4 32420802 32421057 -151867605 + L1ME1 LINE L1 5907 6157 -27 251 331 105 8 chr4 32421186 32421310 -151867352 + MIR3 SINE MIR 30 165 -43 2138 87 21 3 chr4 32421807 32422096 -151866566 - AluSq SINE Alu -18 295 2 311 308 116 50 chr4 32422460 32422762 -151865900 + L1MEc LINE L1 37 358 -6038 356 192 14 14 chr4 32422762 32422835 -151865827 - MLT1H LTR MaLR -393 156 84 21 0 0 0 chr4 32422908 32422929 -151865733 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr4 32423531 32423569 -151865093 + AT_rich Low_complexity Low_complexity 1 38 0 524 192 156 24 chr4 32424256 32424423 -151864239 - MER53 DNA DNA 0 189 1 247 246 45 55 chr4 32424440 32424550 -151864112 + LTR67 LTR ERVL 415 523 -34 2385 48 6 22 chr4 32425205 32425521 -151863141 - L1PA4 LINE L1 0 6155 5845 256 196 71 0 chr4 32426119 32426175 -151862487 - L2 LINE L2 0 3313 3254 319 273 0 0 chr4 32426181 32426247 -151862415 - MER2 DNA MER2_type -7 338 273 469 354 71 16 chr4 32426441 32426749 -151861913 + HERVL LTR ERVL 2022 2346 -3308 711 253 0 0 chr4 32427396 32427542 -151861120 - MLT1A2 LTR MaLR -228 146 1 22 0 0 0 chr4 32427713 32427735 -151860927 + AT_rich Low_complexity Low_complexity 1 22 0 340 340 87 11 chr4 32428668 32428853 -151859809 + MIR SINE MIR 6 204 -58 1104 233 29 56 chr4 32429741 32429959 -151858703 - MLT1A1 LTR MaLR 0 365 160 1879 124 3 59 chr4 32429959 32430282 -151858380 - AluY SINE Alu -6 305 1 1104 233 29 56 chr4 32430282 32430437 -151858225 - MLT1A1 LTR MaLR -205 160 2 397 323 78 26 chr4 32431806 32432038 -151856624 + L3 LINE CR1 1202 1445 -132 192 77 0 0 chr4 32433282 32433308 -151855354 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 419 318 112 0 chr4 32433368 32433538 -151855124 - MIR SINE MIR -67 195 7 591 214 34 17 chr4 32433827 32433944 -151854718 + FLAM_C SINE Alu 7 125 -18 222 164 0 0 chr4 32433944 32433999 -151854663 + (TA)n Simple_repeat Simple_repeat 2 56 0 1759 191 12 50 chr4 32434716 32435119 -151853543 - MLT1B LTR MaLR -2 388 1 184 355 101 7 chr4 32435377 32435515 -151853147 + L3b LINE CR1 1289 1439 -144 218 370 82 20 chr4 32436227 32436373 -151852289 + MIR SINE MIR 20 174 -88 195 42 0 0 chr4 32436513 32436537 -151852125 + (T)n Simple_repeat Simple_repeat 1 24 0 312 282 0 83 chr4 32436546 32436702 -151851960 - LTR33A LTR ERVL -34 489 347 377 305 70 54 chr4 32436951 32437210 -151851452 - MLT1I LTR MaLR -19 390 128 2087 182 107 8 chr4 32438396 32438864 -151849798 - MER67D LTR ERV1 0 514 1 532 293 52 37 chr4 32439128 32439486 -151849176 - MLT1I LTR MaLR -20 389 57 234 288 0 0 chr4 32441929 32441988 -151846674 + CT-rich Low_complexity Low_complexity 2 60 0 579 320 107 13 chr4 32442269 32442503 -151846159 - MIR SINE MIR -4 258 3 730 196 8 0 chr4 32442625 32442758 -151845904 - FLAM_C SINE Alu -3 140 7 988 101 0 0 chr4 32443033 32443195 -151845467 + AluSc SINE Alu 170 331 0 253 207 52 0 chr4 32443231 32443289 -151845373 + MER58 DNA MER1_type 2359 2419 -1 27 0 0 0 chr4 32444108 32444135 -151844527 + AT_rich Low_complexity Low_complexity 1 27 0 23 33 0 0 chr4 32445398 32445428 -151843234 + AT_rich Low_complexity Low_complexity 1 30 0 207 0 0 0 chr4 32445438 32445461 -151843201 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1800 115 8 0 chr4 32445470 32445731 -151842931 - AluSx SINE Alu -44 268 6 439 243 0 0 chr4 32445734 32445808 -151842854 + MER2 DNA MER2_type 272 345 0 1839 148 7 3 chr4 32445860 32446158 -151842504 - AluJo SINE Alu -2 310 12 264 318 0 12 chr4 32446805 32446890 -151841772 + MIR SINE MIR 174 257 -5 1961 131 0 10 chr4 32447094 32447412 -151841250 - AluSq SINE Alu 0 316 2 412 273 200 0 chr4 32447507 32447657 -151841005 - MER5A DNA MER1_type 0 189 10 517 280 63 35 chr4 32447659 32447802 -151840860 + L2 LINE L2 3126 3272 0 2904 155 8 12 chr4 32447855 32448365 -151840297 - L1PB4 LINE L1 -3 6153 5646 410 109 315 22 chr4 32448472 32448564 -151840098 + LTR14B LTR ERVK 1 119 -489 1813 69 13 98 chr4 32448569 32448887 -151839775 + LTR14A LTR ERVK 54 344 0 28 29 0 0 chr4 32449285 32449320 -151839342 + AT_rich Low_complexity Low_complexity 1 35 0 1656 116 3 104 chr4 32449925 32450253 -151838409 + AluSx SINE Alu 1 295 -17 261 268 12 0 chr4 32450891 32450973 -151837689 + A-rich Low_complexity Low_complexity 1 83 0 1776 149 52 46 chr4 32451434 32451822 -151836840 - MLT1B LTR MaLR 0 390 1 27 29 0 0 chr4 32452488 32452522 -151836140 + AT_rich Low_complexity Low_complexity 1 34 0 350 228 114 72 chr4 32452553 32452790 -151835872 + MER5C DNA MER1_type 1 247 -77 231 167 0 67 chr4 32452800 32452860 -151835802 + A-rich Low_complexity Low_complexity 5 60 0 232 305 25 17 chr4 32452900 32453018 -151835644 + MIR SINE MIR 5 123 -139 605 258 26 70 chr4 32453105 32453334 -151835328 - MER20 DNA MER1_type 0 219 1 228 214 0 0 chr4 32453583 32453639 -151835023 + (TA)n Simple_repeat Simple_repeat 1 56 0 1008 193 100 43 chr4 32453848 32454148 -151834514 + MER33 DNA MER1_type 7 323 -1 33 73 0 0 chr4 32454716 32454784 -151833878 + AT_rich Low_complexity Low_complexity 1 68 0 1063 191 86 65 chr4 32454951 32455287 -151833375 + MER2 DNA MER2_type 2 344 0 23 33 0 0 chr4 32455290 32455320 -151833342 + AT_rich Low_complexity Low_complexity 1 30 0 502 220 23 69 chr4 32455328 32455501 -151833161 + MER105 DNA DNA 22 186 -18 416 322 71 29 chr4 32456316 32456741 -151831921 - L2 LINE L2 -1565 1749 1237 345 276 184 0 chr4 32456895 32457047 -151831615 + MIR SINE MIR 83 262 0 312 48 0 0 chr4 32457419 32457461 -151831201 + (TG)n Simple_repeat Simple_repeat 2 43 0 225 281 125 21 chr4 32457728 32457824 -151830838 - MER102b DNA MER1_type -6 335 230 443 302 117 28 chr4 32458206 32458385 -151830277 - MIR3 SINE MIR -2 206 12 345 265 22 73 chr4 32459572 32459708 -151828954 - L3b LINE CR1 -59 1524 1396 2118 76 0 73 chr4 32461427 32461755 -151826907 - AluY SINE Alu -7 304 1 288 380 25 0 chr4 32462697 32462897 -151825765 + MIR SINE MIR 55 259 -3 3447 199 23 6 chr4 32463280 32464005 -151824657 - L1 LINE L1 -3116 3030 2293 466 326 33 0 chr4 32466996 32467177 -151821485 - MIR SINE MIR -1 261 75 362 273 111 47 chr4 32467615 32467787 -151820875 - MLT1J LTR MaLR 0 511 329 642 271 51 28 chr4 32467860 32468074 -151820588 - MLT1J LTR MaLR -292 219 1 915 332 153 0 chr4 32469826 32470193 -151818469 + L2 LINE L2 2291 2713 -601 715 206 0 8 chr4 32470196 32470362 -151818300 + FLAM_A SINE Alu 1 165 0 611 296 62 11 chr4 32471546 32471722 -151816940 + MIR3 SINE MIR 1 185 -23 203 128 43 0 chr4 32472828 32472875 -151815787 + A-rich Low_complexity Low_complexity 2 50 0 12826 209 23 14 chr4 32473289 32479413 -151809249 - L1PA16 LINE L1 -9 6860 714 180 330 93 10 chr4 32479414 32479511 -151809151 + MIR SINE MIR 45 149 -59 192 125 0 0 chr4 32481739 32481771 -151806891 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 786 93 17 0 chr4 32481866 32481984 -151806678 - L1PA6 LINE L1 -7 6147 6028 192 296 19 0 chr4 32481985 32482039 -151806623 + L2 LINE L2 3172 3226 -87 343 289 0 11 chr4 32482059 32482149 -151806513 + L1MC4 LINE L1 6614 6702 -1340 2206 121 0 9 chr4 32482650 32482965 -151805697 - AluSx SINE Alu 0 312 1 221 299 26 0 chr4 32484437 32484514 -151804148 - L2 LINE L2 -62 3251 3173 3149 42 3 0 chr4 32484631 32485016 -151803646 - L1PA4 LINE L1 -3 6152 5767 604 295 105 0 chr4 32486048 32486238 -151802424 + MIR SINE MIR 31 240 -22 206 371 40 16 chr4 32486363 32486487 -151802175 - MIR3 SINE MIR -76 132 6 304 53 0 0 chr4 32486736 32486774 -151801888 - MLT2B1 LTR ERVL -482 38 1 21 0 0 0 chr4 32487059 32487080 -151801582 + AT_rich Low_complexity Low_complexity 1 21 0 1943 198 97 11 chr4 32487350 32487815 -151800847 + MLT1D LTR MaLR 1 505 0 338 278 47 94 chr4 32487832 32488066 -151800596 - MIR SINE MIR -6 256 34 334 333 42 17 chr4 32488200 32488320 -151800342 - L2 LINE L2 -4 3268 3146 195 364 0 0 chr4 32489195 32489250 -151799412 + MIR SINE MIR 92 146 -62 193 337 152 0 chr4 32490218 32490310 -151798352 + MIR SINE MIR 137 242 -20 1551 231 72 74 chr4 32490395 32490783 -151797879 - MLT2B3 LTR ERVL 0 554 166 2470 70 0 3 chr4 32490783 32491095 -151797567 - AluY SINE Alu 0 311 1 1551 231 72 74 chr4 32491095 32491261 -151797401 - MLT2B3 LTR ERVL -388 166 1 2906 146 10 15 chr4 32491292 32491812 -151796850 - L1MA9 LINE L1 0 6312 5796 384 193 44 53 chr4 32492648 32492682 -151795980 + MER69 DNA AcHobo 2393 2426 -100 1431 223 72 56 chr4 32492682 32493179 -151795483 + MLT1D LTR MaLR 1 505 0 384 193 44 53 chr4 32493179 32493258 -151795404 + MER69 DNA AcHobo 2426 2505 -21 268 253 84 0 chr4 32494569 32494664 -151793998 - MIR SINE MIR -56 206 104 690 241 104 81 chr4 32495108 32495270 -151793392 + L1ME2 LINE L1 5711 5868 -296 1131 228 127 45 chr4 32495270 32495734 -151792928 - MLT1D LTR MaLR -3 502 1 690 241 104 81 chr4 32495734 32496015 -151792647 + L1ME2 LINE L1 5868 6164 0 492 128 0 0 chr4 32497194 32497272 -151791390 + (TCCA)n Simple_repeat Simple_repeat 4 81 0 2171 117 0 0 chr4 32498282 32498580 -151790082 + AluSq SINE Alu 1 298 -15 26 30 0 0 chr4 32498596 32498629 -151790033 + AT_rich Low_complexity Low_complexity 1 33 0 22 80 0 0 chr4 32499146 32499196 -151789466 + AT_rich Low_complexity Low_complexity 1 50 0 253 342 70 77 chr4 32499435 32499748 -151788914 + L2 LINE L2 1725 2035 -1279 901 264 154 48 chr4 32499821 32499857 -151788805 - MLT2B1 LTR ERVL -3 517 486 477 0 0 0 chr4 32499857 32499910 -151788752 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 901 264 154 48 chr4 32499910 32500289 -151788373 - MLT2B1 LTR ERVL -34 486 58 2913 179 11 25 chr4 32500318 32500812 -151787850 + L1MB3 LINE L1 5529 6015 -168 2270 131 46 8 chr4 32500812 32501163 -151787499 + THE1B LTR MaLR 1 364 0 2913 179 11 25 chr4 32501163 32501239 -151787423 + L1MB3 LINE L1 6015 6091 -92 637 183 0 14 chr4 32501262 32501404 -151787258 + L1MB3 LINE L1 6044 6183 0 2327 97 0 0 chr4 32501686 32501984 -151786678 - AluSc SINE Alu -11 298 1 440 319 44 9 chr4 32504415 32504605 -151784057 - MIR SINE MIR -8 254 55 615 251 119 37 chr4 32505092 32505335 -151783327 + MLT1H LTR MaLR 43 305 -244 4671 105 3 0 chr4 32505499 32506154 -151782508 - L1PA11 LINE L1 0 6174 5518 1246 136 30 0 chr4 32506154 32506398 -151782264 + L1P4 LINE L1 5210 5459 -709 328 224 24 0 chr4 32506398 32506483 -151782179 + MLT1H LTR MaLR 463 549 0 1262 39 13 0 chr4 32507061 32507215 -151781447 - L1PA3 LINE L1 -2 6153 5998 3685 82 224 2 chr4 32507555 32508118 -151780544 - LTR12 LTR ERV1 0 688 1 2015 112 20 0 chr4 32508206 32508501 -151780161 - AluSq SINE Alu -12 301 1 219 288 198 0 chr4 32508690 32508801 -151779861 - L2 LINE L2 -1 3312 3180 222 105 0 0 chr4 32508883 32508921 -151779741 + (A)n Simple_repeat Simple_repeat 1 38 0 306 345 55 19 chr4 32509056 32509396 -151779266 + MLT1I LTR MaLR 31 409 0 229 306 271 7 chr4 32511880 32512024 -151776638 + MER5A DNA MER1_type 2 183 -6 2047 103 27 10 chr4 32512334 32512626 -151776036 + AluSx SINE Alu 5 301 -11 331 247 78 32 chr4 32513099 32513253 -151775409 - MER103 DNA DNA 0 166 6 192 77 0 0 chr4 32515684 32515710 -151772952 + (TA)n Simple_repeat Simple_repeat 1 26 0 315 330 0 0 chr4 32515873 32515961 -151772701 - L1MC4 LINE L1 -1341 6701 6614 308 250 36 0 chr4 32515889 32515973 -151772689 + L1MC4 LINE L1 6614 6700 -1342 * 334 276 23 0 chr4 32515973 32516060 -151772602 + L1MC4 LINE L1 6612 6700 -1342 207 204 0 0 chr4 32516062 32516111 -151772551 + (TA)n Simple_repeat Simple_repeat 2 50 0 2268 115 12 9 chr4 32516390 32516720 -151771942 - THE1B LTR MaLR 0 364 34 360 0 0 0 chr4 32517586 32517626 -151771036 + (TA)n Simple_repeat Simple_repeat 1 40 0 240 35 0 0 chr4 32517625 32517654 -151771008 + (CA)n Simple_repeat Simple_repeat 2 30 0 * 29 70 0 0 chr4 32517944 32518001 -151770661 + AT_rich Low_complexity Low_complexity 1 57 0 311 330 18 18 chr4 32518526 32518638 -151770024 + L1ME3A LINE L1 5808 5919 -251 515 264 108 67 chr4 32518965 32519442 -151769220 + HAL1 LINE L1 764 1289 -1218 198 0 0 0 chr4 32519442 32519464 -151769198 + (GA)n Simple_repeat Simple_repeat 2 23 0 515 264 108 67 chr4 32519464 32519792 -151768870 + HAL1 LINE L1 1289 1602 -905 423 308 96 25 chr4 32520154 32520352 -151768310 + LTR16A LTR ERVL 234 445 -5 704 278 172 40 chr4 32520360 32520756 -151767906 + HERV16 LTR ERVL 4 451 -4545 436 253 110 28 chr4 32520837 32521019 -151767643 + HERV16 LTR ERVL 560 756 -4240 252 0 0 0 chr4 32521211 32521239 -151767423 + (T)n Simple_repeat Simple_repeat 1 28 0 252 227 0 148 chr4 32521611 32521699 -151766963 + HERV16 LTR ERVL 1310 1384 -3612 21 57 0 0 chr4 32521720 32521755 -151766907 + AT_rich Low_complexity Low_complexity 1 35 0 407 331 15 0 chr4 32521944 32522077 -151766585 + HERV16 LTR ERVL 1741 1875 -3121 711 319 45 59 chr4 32522081 32522369 -151766293 + MER45C DNA AcHobo 1 284 -669 552 188 140 25 chr4 32522420 32522610 -151766052 + MER45C DNA AcHobo 735 946 -7 1192 312 22 20 chr4 32522621 32523079 -151765583 + HERV16 LTR ERVL 1880 2338 -2658 535 228 16 8 chr4 32523168 32523295 -151765367 - MER65B LTR ERV1 -403 128 1 1702 177 0 14 chr4 32523803 32524097 -151764565 - AluJo SINE Alu -20 292 3 344 293 94 38 chr4 32524102 32524314 -151764348 + HAL1 LINE L1 2169 2392 -115 1296 188 102 64 chr4 32524513 32524660 -151764002 - THE1C LTR MaLR 0 375 235 2239 121 22 25 chr4 32524660 32525025 -151763637 - THE1B LTR MaLR 0 364 1 1296 188 102 64 chr4 32525025 32525238 -151763424 - THE1C LTR MaLR -140 235 1 192 380 98 16 chr4 32525458 32525713 -151762949 + L2 LINE L2 2804 3079 -193 235 279 25 0 chr4 32525849 32525928 -151762734 + (TA)n Simple_repeat Simple_repeat 2 82 0 3371 164 75 5 chr4 32526277 32527261 -151761401 - L1MA9 LINE L1 -182 6130 5039 25 0 0 0 chr4 32527970 32527995 -151760667 + AT_rich Low_complexity Low_complexity 1 25 0 211 179 0 0 chr4 32528231 32528270 -151760392 - MIR SINE MIR -13 249 211 189 340 65 45 chr4 32528684 32528884 -151759778 + MIR SINE MIR 53 256 -6 23 33 0 0 chr4 32529516 32529546 -151759116 + AT_rich Low_complexity Low_complexity 1 30 0 225 284 0 0 chr4 32529763 32529837 -151758825 + (TA)n Simple_repeat Simple_repeat 1 74 0 255 157 0 0 chr4 32530002 32530053 -151758609 + (TATG)n Simple_repeat Simple_repeat 2 52 0 1396 254 85 31 chr4 32530062 32530931 -151757731 - L1ME1 LINE L1 -287 6674 5758 545 253 68 0 chr4 32530934 32531155 -151757507 - L1ME1 LINE L1 -1754 5187 4952 2825 283 47 32 chr4 32531163 32531678 -151756984 - L1ME1 LINE L1 -2154 4787 4281 214 162 0 0 chr4 32531678 32531715 -151756947 + (TATATG)n Simple_repeat Simple_repeat 5 41 0 2825 283 47 32 chr4 32531715 32532807 -151755855 - L1ME1 LINE L1 -2660 4281 3120 521 258 76 46 chr4 32532809 32533223 -151755439 + L1MEc LINE L1 2030 2405 -3810 864 264 84 12 chr4 32533240 32533574 -151755088 - L1ME1 LINE L1 -4889 1534 1177 286 351 22 44 chr4 32533652 32533880 -151754782 - L1ME1 LINE L1 -5394 1029 807 957 275 46 17 chr4 32534092 32534441 -151754221 - L1ME1 LINE L1 -5955 468 110 836 341 93 12 chr4 32536433 32537054 -151751608 - L2 LINE L2 0 3313 2548 226 267 41 14 chr4 32537109 32537255 -151751407 + (TTATA)n Simple_repeat Simple_repeat 5 154 0 199 309 170 0 chr4 32537255 32537349 -151751313 + L2 LINE L2 2544 2653 -661 1578 124 57 25 chr4 32537349 32537631 -151751031 + THE1C LTR MaLR 85 375 0 186 364 58 13 chr4 32537788 32537942 -151750720 - MIR SINE MIR -48 214 54 1321 215 48 16 chr4 32538204 32538541 -151750121 + L1MA10 LINE L1 5996 6331 -3 412 259 37 0 chr4 32538541 32538649 -151750013 + L1MB5 LINE L1 6040 6151 -23 2004 194 39 15 chr4 32538652 32539064 -151749598 + MSTB LTR MaLR 1 422 -4 2754 10 0 10 chr4 32539907 32540219 -151748443 - AluYa5 SINE Alu -2 309 1 652 233 12 64 chr4 32540751 32540923 -151747739 + Charlie1a DNA MER1_type 1 163 -1292 412 265 117 25 chr4 32540933 32541129 -151747533 + Charlie1a DNA MER1_type 484 697 -758 1723 250 79 23 chr4 32541130 32541687 -151746975 - MLT1E3 LTR MaLR 0 624 50 462 307 20 13 chr4 32542381 32542531 -151746131 - MIR SINE MIR -103 159 9 213 65 0 0 chr4 32543029 32543060 -151745602 + (TC)n Simple_repeat Simple_repeat 2 32 0 465 319 28 7 chr4 32543103 32543244 -151745418 - MIR3 SINE MIR -42 166 23 476 282 121 36 chr4 32545052 32545300 -151743362 - L3 LINE CR1 -4 1573 1305 23 0 0 0 chr4 32545436 32545459 -151743203 + AT_rich Low_complexity Low_complexity 1 23 0 218 341 68 0 chr4 32546132 32546220 -151742442 - L3 LINE CR1 -439 1138 1045 203 381 65 7 chr4 32546447 32546586 -151742076 - L2 LINE L2 0 3313 3167 2105 172 34 49 chr4 32546762 32547234 -151741428 - L1MC3 LINE L1 -184 7601 7137 581 278 42 69 chr4 32547244 32547550 -151741112 - L1MCb LINE L1 -5710 335 38 1917 193 21 23 chr4 32547564 32547948 -151740714 - MLT1B LTR MaLR -7 383 1 1606 224 37 3 chr4 32548248 32548601 -151740061 - MLT1A1 LTR MaLR 0 365 1 456 234 48 8 chr4 32548651 32548775 -151739887 - MER76 LTR ERV -9 679 551 246 331 92 71 chr4 32548825 32549009 -151739653 - MER5A DNA MER1_type 0 189 2 265 284 128 28 chr4 32549100 32549241 -151739421 + MIR3 SINE MIR 50 204 -4 247 337 22 22 chr4 32549802 32549891 -151738771 + MIR SINE MIR 68 156 -106 1533 266 47 32 chr4 32550568 32551097 -151737565 + MLT1E2 LTR MaLR 115 626 0 370 293 78 12 chr4 32551377 32551544 -151737118 + MIR SINE MIR 70 247 -15 212 332 49 86 chr4 32551732 32551976 -151736686 - L2 LINE L2 -167 3105 2871 2217 120 3 6 chr4 32553182 32553516 -151735146 + L1PB3 LINE L1 5660 5992 -162 2252 90 0 0 chr4 32553601 32553901 -151734761 - AluSc SINE Alu -9 300 1 230 244 82 91 chr4 32554425 32554765 -151733897 - L1ME LINE L1 -3996 2829 2493 401 257 174 61 chr4 32554955 32555266 -151733396 - L1ME LINE L1 -4576 2249 1904 25 51 0 0 chr4 32555266 32555305 -151733357 + AT_rich Low_complexity Low_complexity 1 39 0 2295 180 13 16 chr4 32555331 32555781 -151732881 - L1MC1 LINE L1 -256 6077 5629 303 321 24 13 chr4 32556027 32556260 -151732402 - L1ME LINE L1 -5051 1565 1296 360 330 38 27 chr4 32556606 32556791 -151731871 - MIR3 SINE MIR 0 208 22 306 242 30 30 chr4 32556856 32556955 -151731707 - LTR67 LTR ERVL -31 526 428 2479 56 0 0 chr4 32557355 32557660 -151731002 + AluY SINE Alu 1 305 -6 191 252 68 87 chr4 32557676 32557779 -151730883 + MIR SINE MIR 107 207 -55 212 179 0 0 chr4 32558480 32558519 -151730143 + T-rich Low_complexity Low_complexity 1 39 0 1922 41 0 8 chr4 32558523 32558767 -151729895 + L1PA4 LINE L1 5911 6152 -3 2188 104 3 0 chr4 32558940 32559229 -151729433 + AluSx SINE Alu 1 290 -22 213 65 0 0 chr4 32559232 32559263 -151729399 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2291 117 0 0 chr4 32559991 32560300 -151728362 + AluSg SINE Alu 1 309 -1 392 82 16 0 chr4 32561008 32561069 -151727593 + (TA)n Simple_repeat Simple_repeat 2 63 0 24 0 0 0 chr4 32561888 32561912 -151726750 + AT_rich Low_complexity Low_complexity 1 24 0 264 309 81 37 chr4 32562085 32562221 -151726441 + MIR SINE MIR 60 201 -61 183 42 0 0 chr4 32562494 32562518 -151726144 + (GA)n Simple_repeat Simple_repeat 2 25 0 13548 154 16 37 chr4 32562739 32564172 -151724490 + Tigger1 DNA MER2_type 11 1370 -1048 690 146 0 0 chr4 32564172 32564282 -151724380 + L1MB8 LINE L1 6061 6170 -8 13548 154 16 37 chr4 32564282 32565309 -151723353 + Tigger1 DNA MER2_type 1370 2418 0 232 318 0 0 chr4 32565386 32565452 -151723210 - MIR SINE MIR -153 109 44 23 0 0 0 chr4 32565700 32565723 -151722939 + AT_rich Low_complexity Low_complexity 1 23 0 217 371 8 24 chr4 32566181 32566305 -151722357 - L2 LINE L2 -1007 2307 2186 2339 113 11 11 chr4 32566383 32566746 -151721916 + THE1B LTR MaLR 2 364 0 247 351 26 33 chr4 32566826 32566977 -151721685 + MER5A DNA MER1_type 10 159 -30 23 0 0 0 chr4 32567414 32567437 -151721225 + AT_rich Low_complexity Low_complexity 1 23 0 227 268 28 0 chr4 32567452 32567523 -151721139 + MER103 DNA DNA 94 166 0 333 325 51 6 chr4 32567686 32567843 -151720819 + MIR SINE MIR 97 260 -2 722 221 0 0 chr4 32567945 32568076 -151720586 - FLAM_A SINE Alu -2 131 1 1036 173 66 29 chr4 32568091 32568363 -151720299 - L1MA8 LINE L1 0 6291 6010 1005 338 79 41 chr4 32568893 32569745 -151718917 - L2 LINE L2 -673 2641 1758 347 160 0 85 chr4 32569752 32569846 -151718816 - MER53 DNA DNA -1 188 103 386 324 66 39 chr4 32569894 32570019 -151718643 - L2 LINE L2 -1593 1721 1601 2474 67 0 3 chr4 32570019 32570331 -151718331 - AluY SINE Alu 0 311 1 386 324 66 39 chr4 32570331 32570538 -151718124 - L2 LINE L2 -1713 1601 1380 1842 170 0 0 chr4 32570841 32571135 -151717527 + AluJb SINE Alu 3 296 -16 182 174 22 0 chr4 32571313 32571359 -151717303 + (TA)n Simple_repeat Simple_repeat 1 47 0 312 27 0 0 chr4 32571415 32571452 -151717210 + (TG)n Simple_repeat Simple_repeat 1 37 0 293 339 115 10 chr4 32571649 32571841 -151716821 + MIR SINE MIR 34 245 -17 180 310 69 0 chr4 32571868 32571926 -151716736 - MIR SINE MIR -21 241 180 250 316 110 13 chr4 32572038 32572193 -151716469 - MIR SINE MIR -86 176 7 1978 141 7 0 chr4 32572366 32572671 -151715991 - AluSx SINE Alu -5 307 1 22 0 0 0 chr4 32575551 32575573 -151713089 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr4 32576487 32576507 -151712155 + (TC)n Simple_repeat Simple_repeat 1 20 0 242 390 8 8 chr4 32576713 32576831 -151711831 - L2 LINE L2 0 3272 3155 606 282 62 37 chr4 32577049 32577524 -151711138 - MLT1G LTR MaLR -2 588 34 323 291 162 12 chr4 32577784 32578025 -151710637 - MLT1J2 LTR MaLR -105 345 69 2294 90 3 0 chr4 32578223 32578523 -151710139 + AluY SINE Alu 1 301 -10 376 152 91 0 chr4 32578823 32578889 -151709773 - L1PB4 LINE L1 -281 5875 5804 189 0 0 0 chr4 32578894 32578915 -151709747 + (TG)n Simple_repeat Simple_repeat 2 22 0 203 294 15 0 chr4 32578944 32579012 -151709650 + (TA)n Simple_repeat Simple_repeat 2 70 0 365 57 0 19 chr4 32579018 32579071 -151709591 + (TG)n Simple_repeat Simple_repeat 2 53 0 335 23 23 0 chr4 32579070 32579114 -151709548 + (TA)n Simple_repeat Simple_repeat 1 45 0 * 2655 134 4 20 chr4 32579133 32579588 -151709074 - L1PB4 LINE L1 -384 5772 5325 543 317 86 52 chr4 32580034 32580419 -151708243 + L3 LINE CR1 1158 1555 -22 289 282 57 32 chr4 32580421 32580545 -151708117 - MIR3 SINE MIR -1 207 81 285 143 0 0 chr4 32581002 32581051 -151707611 - L2 LINE L2 0 3313 3265 291 300 22 94 chr4 32581367 32581437 -151707225 - MIR SINE MIR -1 261 188 2203 102 3 10 chr4 32581437 32581740 -151706922 - AluSx SINE Alu -11 301 1 291 300 22 94 chr4 32581740 32581849 -151706813 - MIR SINE MIR -74 188 95 625 292 91 62 chr4 32582227 32582710 -151705952 + MLT1J LTR MaLR 3 499 -12 21 0 0 0 chr4 32583440 32583461 -151705201 + AT_rich Low_complexity Low_complexity 1 21 0 2294 132 43 3 chr4 32583957 32584329 -151704333 + L1PA15 LINE L1 5779 6165 0 1171 260 56 6 chr4 32584663 32585021 -151703641 + L1ME3A LINE L1 5523 5898 -272 24 0 0 0 chr4 32588403 32588427 -151700235 + AT_rich Low_complexity Low_complexity 1 24 0 2009 105 4 4 chr4 32588615 32588918 -151699744 + AluSc SINE Alu 3 305 0 3986 216 79 22 chr4 32588948 32589802 -151698860 - L1MC3 LINE L1 -8 7777 6814 432 0 0 0 chr4 32589802 32589850 -151698812 + (TG)n Simple_repeat Simple_repeat 2 49 0 3986 216 79 22 chr4 32589850 32590530 -151698132 - L1MC3 LINE L1 -971 6814 6174 1701 135 7 66 chr4 32590618 32590947 -151697715 - AluSq SINE Alu 0 311 1 21 36 0 0 chr4 32591523 32591551 -151697111 + AT_rich Low_complexity Low_complexity 1 28 0 465 336 48 22 chr4 32592704 32592933 -151695729 - MIR SINE MIR 0 262 28 475 273 68 19 chr4 32592981 32593186 -151695476 - LTR67 LTR ERVL -17 540 326 2274 106 0 0 chr4 32594208 32594509 -151694153 - AluSg SINE Alu -9 301 1 3071 319 99 24 chr4 32594664 32596215 -151692447 - L2 LINE L2 -661 2653 986 285 323 37 19 chr4 32597315 32597367 -151691295 + L1MCc LINE L1 39 89 -6334 2256 93 0 7 chr4 32597367 32597667 -151690995 + AluSc SINE Alu 1 298 -11 285 323 37 19 chr4 32597667 32597775 -151690887 + L1MCc LINE L1 89 202 -6221 30 0 0 0 chr4 32598372 32598402 -151690260 + AT_rich Low_complexity Low_complexity 1 30 0 253 196 62 82 chr4 32598421 32598518 -151690144 + L1MCc LINE L1 2429 2523 -4599 558 273 129 43 chr4 32598554 32598810 -151689852 - MLT1E3 LTR MaLR 0 624 347 976 155 0 12 chr4 32598813 32598981 -151689681 + MER61-int LTR ERV1 2615 2780 -2437 192 40 0 0 chr4 32598982 32599007 -151689655 + (CAA)n Simple_repeat Simple_repeat 3 27 0 2062 188 18 5 chr4 32599007 32599391 -151689271 + MER61-int LTR ERV1 2817 3205 -2012 3627 101 38 30 chr4 32599417 32599858 -151688804 + LTR19B LTR ERV1 1 451 -129 2134 65 0 7 chr4 32599858 32600171 -151688491 + AluY SINE Alu 7 317 0 3627 101 38 30 chr4 32600171 32600303 -151688359 + LTR19B LTR ERV1 451 580 0 1114 263 141 30 chr4 32600308 32600677 -151687985 - MLT1E1 LTR MaLR -244 410 1 2872 293 62 22 chr4 32600678 32600968 -151687694 + L1MCc LINE L1 2553 2830 -4111 2385 90 0 6 chr4 32600968 32601280 -151687382 + AluSg SINE Alu 1 310 0 2872 293 62 22 chr4 32601280 32603164 -151685498 + L1MCc LINE L1 2830 4930 -2011 1070 282 113 3 chr4 32603164 32603519 -151685143 - LTR53 LTR ERVL 0 519 126 2523 163 14 0 chr4 32603519 32603987 -151684675 + MER1A DNA MER1_type 1 524 -5 369 163 138 12 chr4 32603989 32604064 -151684598 - LTR53 LTR ERVL -384 135 51 1504 245 28 20 chr4 32604064 32604456 -151684206 + MLT1C LTR MaLR 1 395 -72 1348 278 11 8 chr4 32604456 32604827 -151683835 + L1MD3 LINE L1 7452 7823 -172 24 0 0 0 chr4 32605049 32605073 -151683589 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 32605184 32605205 -151683457 + AT_rich Low_complexity Low_complexity 1 21 0 1245 215 64 13 chr4 32605906 32606218 -151682444 - MER2 DNA MER2_type -9 336 9 1120 254 111 19 chr4 32606585 32606944 -151681718 + MLT1H LTR MaLR 14 405 -144 258 32 0 0 chr4 32606945 32606976 -151681686 + (CAGCC)n Simple_repeat Simple_repeat 3 33 0 186 313 179 0 chr4 32608381 32608493 -151680169 - MIR SINE MIR -14 248 117 310 307 129 7 chr4 32609343 32609483 -151679179 - MIR SINE MIR -27 235 79 28 29 0 0 chr4 32609953 32609988 -151678674 + AT_rich Low_complexity Low_complexity 1 35 0 506 275 128 22 chr4 32610291 32610551 -151678111 + MLT1J2 LTR MaLR 42 331 -119 322 134 63 0 chr4 32610760 32610887 -151677775 + (TA)n Simple_repeat Simple_repeat 1 135 0 33 66 0 0 chr4 32611081 32611142 -151677520 + AT_rich Low_complexity Low_complexity 1 61 0 231 270 138 13 chr4 32611158 32611310 -151677352 + L1ME4a LINE L1 5947 6117 -4 22 56 0 0 chr4 32612331 32612367 -151676295 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr4 32612369 32612389 -151676273 + (TA)n Simple_repeat Simple_repeat 2 21 0 2174 109 0 16 chr4 32612729 32613041 -151675621 - AluSx SINE Alu -5 307 1 260 368 69 45 chr4 32613719 32614094 -151674568 - L2 LINE L2 0 3313 2930 664 176 7 0 chr4 32614539 32614675 -151673987 + L1MA4A LINE L1 5937 6073 -230 22 80 0 0 chr4 32614684 32614734 -151673928 + AT_rich Low_complexity Low_complexity 1 50 0 21 36 0 0 chr4 32615483 32615511 -151673151 + AT_rich Low_complexity Low_complexity 1 28 0 294 328 90 0 chr4 32616268 32616402 -151672260 - MIR SINE MIR 0 262 117 480 77 0 0 chr4 32617051 32617116 -151671546 - L1PA6 LINE L1 0 6154 6090 761 255 46 0 chr4 32618441 32618698 -151669964 + L1MC3 LINE L1 6636 6862 -923 340 190 63 0 chr4 32618728 32618807 -151669855 + L1MC3 LINE L1 7176 7259 -526 2380 65 3 7 chr4 32618836 32619146 -151669516 + AluY SINE Alu 1 309 -2 396 307 88 45 chr4 32619310 32619443 -151669219 - L1MEc LINE L1 -3751 2464 2338 538 51 26 0 chr4 32619443 32619521 -151669141 + (TCTA)n Simple_repeat Simple_repeat 1 80 0 396 307 88 45 chr4 32619521 32619721 -151668941 - L1MEc LINE L1 -3877 2338 2152 1960 147 10 0 chr4 32619799 32620099 -151668563 + AluSx SINE Alu 1 303 -9 390 264 151 0 chr4 32620145 32620304 -151668358 - MER3 DNA MER1_type -4 205 23 1498 247 53 3 chr4 32620312 32620688 -151667974 - MSTD LTR MaLR 0 396 2 14795 149 31 36 chr4 32620697 32623441 -151665221 - Tigger4(Zombi) DNA MER2_type 0 2731 1 241 245 38 19 chr4 32623977 32624083 -151664579 + L1ME LINE L1 5710 5817 -347 22 0 0 0 chr4 32624205 32624227 -151664435 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr4 32624370 32624415 -151664247 + AT_rich Low_complexity Low_complexity 1 45 0 25 65 0 0 chr4 32624726 32624772 -151663890 + AT_rich Low_complexity Low_complexity 1 46 0 676 285 60 74 chr4 32625031 32625600 -151663062 - L1MC4a LINE L1 -1910 5898 5338 24 32 0 0 chr4 32625652 32625683 -151662979 + AT_rich Low_complexity Low_complexity 1 31 0 6003 105 24 0 chr4 32626299 32627186 -151661476 - L1PA14 LINE L1 0 6161 5254 465 304 60 36 chr4 32627609 32627944 -151660718 + MLT1J1 LTR MaLR 102 444 -2 2220 95 0 3 chr4 32628795 32629110 -151659552 - L1PA7 LINE L1 -1 6153 5840 2692 188 90 15 chr4 32629494 32630107 -151658555 - L1MB8 LINE L1 -16 6162 5504 293 254 32 0 chr4 32630112 32630175 -151658487 - L2 LINE L2 -22 3291 3227 735 179 15 0 chr4 32630427 32630561 -151658101 - AluJo SINE Alu -175 137 2 413 230 11 118 chr4 32631191 32631369 -151657293 - MER5B DNA MER1_type -19 159 1 23 0 0 0 chr4 32631456 32631479 -151657183 + AT_rich Low_complexity Low_complexity 1 23 0 21 71 0 0 chr4 32631852 32631894 -151656768 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr4 32632694 32632719 -151655943 + AT_rich Low_complexity Low_complexity 1 25 0 25 75 0 0 chr4 32632908 32632961 -151655701 + AT_rich Low_complexity Low_complexity 1 53 0 983 129 0 0 chr4 32633782 32633922 -151654740 + AluSg/x SINE Alu 158 297 -15 638 307 47 30 chr4 32634990 32635290 -151653372 + MER102a DNA MER1_type 26 330 0 565 271 64 44 chr4 32636801 32637004 -151651658 - MER63A DNA MER1_type -3 207 1 656 349 120 8 chr4 32637280 32637673 -151650989 + L2 LINE L2 817 1253 -2061 2478 253 66 38 chr4 32637673 32639345 -151649317 + L1MB5 LINE L1 929 2747 -3635 1664 167 13 35 chr4 32639785 32640103 -151648559 + AluSx SINE Alu 1 311 -1 690 296 54 0 chr4 32640242 32640502 -151648160 + L1MB5 LINE L1 3904 4177 -2205 * 9822 197 24 6 chr4 32640500 32642060 -151646602 - L1 LINE L1 -1291 6274 4664 1940 162 0 22 chr4 32642060 32642375 -151646287 - AluSx SINE Alu -2 310 3 9822 197 24 6 chr4 32642375 32642994 -151645668 - L1 LINE L1 -2901 4664 4057 928 142 7 0 chr4 32642994 32643135 -151645527 + FRAM SINE Alu 20 161 -15 3677 224 41 77 chr4 32643145 32644998 -151643664 - L1 LINE L1 -3501 4064 2265 3485 226 47 18 chr4 32645131 32646579 -151642083 + L1MB5 LINE L1 4912 6403 -7 343 282 17 35 chr4 32647009 32647183 -151641479 + MER31-int LTR ERV1 1117 1287 -3649 297 232 71 52 chr4 32647223 32647378 -151641284 + MER31-int LTR ERV1 1289 1446 -3490 435 231 35 46 chr4 32647532 32647705 -151640957 + MER31-int LTR ERV1 1698 1868 -3068 238 276 0 0 chr4 32647713 32647789 -151640873 - L1MC4 LINE L1 -1326 6716 6641 921 253 147 60 chr4 32647822 32648828 -151639834 + MER31-int LTR ERV1 1921 3059 -1877 185 301 14 82 chr4 32649002 32649075 -151639587 + MER5A DNA MER1_type 34 101 -88 2353 100 0 0 chr4 32650425 32650726 -151637936 + AluSg SINE Alu 1 301 -9 1227 163 94 75 chr4 32650726 32651100 -151637562 + LTR23 LTR ERV1 55 435 -2 25 95 0 0 chr4 32651493 32651567 -151637095 + AT_rich Low_complexity Low_complexity 1 74 0 2045 113 0 7 chr4 32652279 32652561 -151636101 - AluSg SINE Alu -30 280 1 3860 167 18 20 chr4 32652750 32653462 -151635200 - MER50 LTR ERV1 -23 711 1 4969 172 24 8 chr4 32653891 32654840 -151633822 + L1MA8 LINE L1 5325 6288 -3 273 57 0 0 chr4 32655049 32655084 -151633578 + (CA)n Simple_repeat Simple_repeat 1 35 0 1024 398 23 42 chr4 32655525 32656391 -151632271 - MERVL LTR ERVL -155 5330 4470 864 357 76 17 chr4 32656397 32656974 -151631688 - MERVL LTR ERVL -1465 4189 3579 399 320 80 4 chr4 32657138 32657363 -151631299 - L1ME3A LINE L1 -255 6710 6469 316 337 0 0 chr4 32657755 32657888 -151630774 + L1ME LINE L1 5483 5615 -549 28 71 0 0 chr4 32658113 32658169 -151630493 + AT_rich Low_complexity Low_complexity 1 56 0 2204 101 7 3 chr4 32658502 32658810 -151629852 + AluSc SINE Alu 1 309 0 2029 113 3 7 chr4 32659072 32659373 -151629289 - AluSg SINE Alu -5 305 6 380 292 104 77 chr4 32659531 32659973 -151628689 - L1M4 LINE L1 -3123 3023 2570 487 327 67 0 chr4 32660412 32660620 -151628042 + MLT1H LTR MaLR 62 283 -266 298 299 41 14 chr4 32660686 32660833 -151627829 + MLT1H LTR MaLR 386 536 -13 372 307 119 34 chr4 32660855 32661233 -151627429 - L1ME3A LINE L1 -990 5951 5542 257 209 38 48 chr4 32661260 32661365 -151627297 - L1ME3A LINE L1 -1469 5472 5369 2059 164 72 8 chr4 32661918 32662320 -151626342 - MSTA LTR MaLR 0 428 1 8697 184 21 11 chr4 32662320 32663852 -151624810 - MSTA-int LTR MaLR 0 1651 99 2116 136 0 7 chr4 32663852 32664160 -151624502 - AluSg SINE Alu -4 306 1 8697 184 21 11 chr4 32664160 32664261 -151624401 - MSTA-int LTR MaLR -1552 99 1 247 65 0 0 chr4 32664270 32664301 -151624361 - MSTA LTR MaLR -15 413 383 1623 172 156 5 chr4 32664313 32664685 -151623977 - MSTA LTR MaLR 0 428 1 328 307 48 41 chr4 32665278 32665571 -151623091 - L1M4 LINE L1 -3714 2432 2138 22 0 0 0 chr4 32665674 32665696 -151622966 + AT_rich Low_complexity Low_complexity 1 22 0 2381 275 52 32 chr4 32666518 32668832 -151619830 - L1MCa LINE L1 -2883 4058 1536 255 94 226 0 chr4 32668957 32669010 -151619652 - L1MC2 LINE L1 -23 6321 6257 * 461 167 49 62 chr4 32669007 32669151 -151619511 - L1MCa LINE L1 -4937 1486 1345 499 279 44 0 chr4 32669560 32669743 -151618919 - LTR33A LTR ERVL 0 523 333 186 309 36 55 chr4 32670064 32670174 -151618488 + L2 LINE L2 2282 2389 -925 499 258 62 23 chr4 32670601 32670729 -151617933 - FRAM SINE Alu -19 157 25 582 141 27 49 chr4 32672090 32672274 -151616388 + CT-rich Low_complexity Low_complexity 1 180 0 260 339 49 68 chr4 32672451 32672820 -151615842 + MLT1L LTR MaLR 172 533 -82 2349 136 8 11 chr4 32672828 32673204 -151615458 + THE1C LTR MaLR 1 375 0 9422 129 53 7 chr4 32673204 32674705 -151613957 + THE1C-int LTR MaLR 1 1571 -9 2420 132 3 16 chr4 32674713 32675093 -151613569 + THE1C LTR MaLR 1 375 0 1204 222 94 60 chr4 32675765 32676148 -151612514 - MSTD LTR MaLR 0 396 1 6080 250 57 23 chr4 32676148 32677825 -151610837 - MSTD-int LTR MaLR 0 1735 1 1559 239 33 5 chr4 32677864 32678232 -151610430 - MSTD LTR MaLR -18 378 1 331 304 36 0 chr4 32678994 32679106 -151609556 - MLT1J2 LTR MaLR -71 379 264 4903 234 80 11 chr4 32679133 32680281 -151608381 + MLT1A1-int LTR MaLR 508 1735 0 1182 205 66 28 chr4 32680305 32680593 -151608069 + MLT1A1 LTR MaLR 60 358 -7 2281 96 3 3 chr4 32680995 32681296 -151607366 - AluSg SINE Alu -9 301 1 2867 186 75 34 chr4 32681947 32682652 -151606010 + L1MB4 LINE L1 5445 6178 -2 1594 103 165 11 chr4 32682783 32683044 -151605618 + AluSx SINE Alu 1 301 -11 302 317 137 24 chr4 32683882 32684131 -151604531 + L1ME LINE L1 5533 5809 -312 204 250 19 0 chr4 32684357 32684409 -151604253 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 343 333 68 59 chr4 32686021 32686360 -151602302 + L1MEc LINE L1 38 379 -6017 1284 192 17 17 chr4 32686875 32687115 -151601547 - LTR32 LTR ERVL 0 471 232 466 139 0 0 chr4 32687174 32687246 -151601416 - LTR32 LTR ERVL -385 86 15 226 253 11 11 chr4 32687275 32687370 -151601292 + L1MEc LINE L1 871 965 -5240 320 224 53 11 chr4 32687439 32687555 -151601107 - L1MCa LINE L1 -4780 1646 1388 405 258 117 62 chr4 32687610 32688045 -151600617 - HAL1 LINE L1 -1048 1459 1001 395 331 144 27 chr4 32688122 32688379 -151600283 - HAL1 LINE L1 -1818 689 403 1492 241 26 9 chr4 32688395 32688743 -151599919 - MLT1A1 LTR MaLR -11 354 1 345 354 51 6 chr4 32688763 32688938 -151599724 - HAL1 LINE L1 -2130 377 195 781 222 66 0 chr4 32688986 32689153 -151599509 + MER58A DNA MER1_type 47 224 0 330 341 183 0 chr4 32690018 32690182 -151598480 + MIR SINE MIR 66 259 -3 22 56 0 0 chr4 32690213 32690249 -151598413 + AT_rich Low_complexity Low_complexity 1 36 0 414 162 0 0 chr4 32690475 32690549 -151598113 + (CA)n Simple_repeat Simple_repeat 2 75 0 240 35 0 0 chr4 32690959 32690988 -151597674 + (TTG)n Simple_repeat Simple_repeat 2 30 0 216 214 0 0 chr4 32691939 32691995 -151596667 + (TG)n Simple_repeat Simple_repeat 2 57 0 526 297 18 18 chr4 32692277 32692442 -151596220 + MLT2E LTR ERVL 29 193 -435 1571 138 0 0 chr4 32694334 32694580 -151594082 - Tigger5 DNA MER2_type 0 2323 2078 333 234 26 0 chr4 32694570 32694647 -151594015 - Tigger5 DNA MER2_type -2244 79 1 * 201 367 17 17 chr4 32694749 32694869 -151593793 - MIR SINE MIR -126 136 17 457 293 77 24 chr4 32695744 32695952 -151592710 - MIR SINE MIR -41 221 3 995 258 130 47 chr4 32696079 32696541 -151592121 + MLT2B1 LTR ERVL 9 452 -63 2076 153 15 3 chr4 32696541 32696882 -151591780 + MER7A DNA MER2_type 3 345 -1 995 258 130 47 chr4 32696882 32696930 -151591732 + MLT2B1 LTR ERVL 452 495 -20 239 246 0 0 chr4 32696931 32696996 -151591666 + MLT2B1 LTR ERVL 456 520 0 4875 74 1 3 chr4 32697273 32697925 -151590737 + L1PA8 LINE L1 5516 6166 -6 770 349 77 26 chr4 32698876 32699201 -151589461 + L2 LINE L2 2406 2713 -600 1351 236 143 18 chr4 32699201 32699650 -151589012 - MLT1D LTR MaLR 0 505 1 770 349 77 26 chr4 32699650 32700182 -151588480 + L2 LINE L2 2713 3311 -2 180 282 117 58 chr4 32700950 32701053 -151587609 + L2 LINE L2 3201 3309 -4 283 331 53 41 chr4 32701921 32702090 -151586572 - MIR3 SINE MIR 0 208 38 26 0 0 0 chr4 32702879 32702905 -151585757 + AT_rich Low_complexity Low_complexity 1 26 0 180 440 40 15 chr4 32703062 32703262 -151585400 + L2 LINE L2 2552 2756 -558 205 361 57 16 chr4 32703719 32703841 -151584821 + L2 LINE L2 3122 3248 -24 2535 139 8 54 chr4 32703957 32704439 -151584223 - LTR46 LTR ERV1 0 460 1 195 129 0 0 chr4 32704706 32704737 -151583925 + (TATG)n Simple_repeat Simple_repeat 2 32 0 318 26 0 0 chr4 32705265 32705304 -151583358 + (TG)n Simple_repeat Simple_repeat 1 39 0 185 0 40 0 chr4 32705303 32705328 -151583334 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 188 216 0 0 chr4 32705634 32705671 -151582991 - MIR SINE MIR -11 251 215 346 413 43 14 chr4 32706117 32706466 -151582196 - L2 LINE L2 -489 2825 2467 407 303 86 36 chr4 32707816 32708037 -151580625 - MLT1L LTR MaLR -27 588 357 21 57 0 0 chr4 32708102 32708137 -151580525 + AT_rich Low_complexity Low_complexity 1 35 0 428 259 84 14 chr4 32708858 32709001 -151579661 + MIR SINE MIR 77 229 -33 252 381 79 30 chr4 32709273 32709773 -151578889 + L2 LINE L2 2671 3192 -121 1760 222 62 46 chr4 32710448 32710993 -151577669 + MLT2B3 LTR ERVL 1 554 0 252 281 133 49 chr4 32711319 32711522 -151577140 + MIR SINE MIR 30 249 -13 265 366 60 0 chr4 32712162 32712296 -151576366 + MIR SINE MIR 91 232 -30 248 307 79 26 chr4 32712430 32712544 -151576118 - MIR SINE MIR -123 139 20 21 0 0 0 chr4 32713126 32713147 -151575515 + AT_rich Low_complexity Low_complexity 1 21 0 194 0 39 0 chr4 32714839 32714865 -151573797 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 383 346 60 13 chr4 32715473 32715936 -151572726 + L1ME3A LINE L1 3843 4327 -1819 478 296 148 33 chr4 32716081 32716683 -151571979 + L1ME3A LINE L1 4510 5180 -966 608 314 70 39 chr4 32716759 32717355 -151571307 + L1ME3A LINE L1 5305 5919 -251 21 0 0 0 chr4 32717421 32717442 -151571220 + AT_rich Low_complexity Low_complexity 1 21 0 2092 114 7 0 chr4 32718409 32718717 -151569945 - AluSg SINE Alu 0 310 1 1664 240 48 18 chr4 32719120 32719620 -151569042 + Charlie1b DNA MER1_type 9 523 0 23 0 0 0 chr4 32719821 32719844 -151568818 + AT_rich Low_complexity Low_complexity 1 23 0 25 75 0 32 chr4 32719868 32719961 -151568701 + AT_rich Low_complexity Low_complexity 1 90 0 279 164 45 15 chr4 32720084 32720151 -151568511 - L1ME3 LINE L1 -57 6105 6037 672 291 52 8 chr4 32720178 32720429 -151568233 - L1ME LINE L1 -580 5651 5390 404 291 74 23 chr4 32720562 32720871 -151567791 - L1ME LINE L1 -1023 5192 4868 * 651 246 58 29 chr4 32720867 32721212 -151567450 - L1ME LINE L1 -4070 2326 1972 568 251 105 26 chr4 32721236 32721503 -151567159 - L1ME LINE L1 -4508 1888 1601 233 177 16 113 chr4 32721566 32721628 -151567034 - HAL1 LINE L1 -1645 862 807 34 42 0 0 chr4 32721650 32721698 -151566964 + AT_rich Low_complexity Low_complexity 1 48 0 267 111 0 0 chr4 32721831 32721867 -151566795 - U2 snRNA snRNA -152 36 1 28 0 0 0 chr4 32721950 32721978 -151566684 + AT_rich Low_complexity Low_complexity 1 28 0 231 211 33 0 chr4 32722165 32722255 -151566407 + (TA)n Simple_repeat Simple_repeat 2 94 0 27 0 0 0 chr4 32722275 32722302 -151566360 + AT_rich Low_complexity Low_complexity 1 27 0 24 53 0 0 chr4 32722412 32722450 -151566212 + AT_rich Low_complexity Low_complexity 1 38 0 2151 103 0 26 chr4 32722906 32723217 -151565445 + AluSg SINE Alu 1 303 -7 24 53 0 0 chr4 32723267 32723305 -151565357 + AT_rich Low_complexity Low_complexity 1 38 0 2462 34 10 10 chr4 32723543 32723838 -151564824 + AluY SINE Alu 3 297 -14 653 220 0 0 chr4 32724754 32724895 -151563767 - L1MB1 LINE L1 -3 6165 6025 294 314 25 25 chr4 32724969 32725090 -151563572 + MIR3 SINE MIR 82 202 -6 201 341 179 9 chr4 32727143 32727366 -151561296 + L3 LINE CR1 1228 1488 -89 193 386 0 0 chr4 32728219 32728276 -151560386 - MIR SINE MIR -152 110 54 1926 112 11 0 chr4 32731864 32732150 -151556512 - HERVL-A2 LTR ERVL -5365 289 1 1510 127 26 0 chr4 32732150 32732379 -151556283 - MLT2A2 LTR ERVL 0 453 219 1081 86 0 0 chr4 32732372 32732512 -151556150 - MLT2A1 LTR ERVL -304 140 1 * 336 223 210 45 chr4 32732512 32732669 -151555993 + MER2 DNA MER2_type 163 345 0 4906 186 42 1 chr4 32733374 32734345 -151554317 + L1PA16 LINE L1 4793 5836 -330 333 0 0 0 chr4 32734345 32734382 -151554280 + (CA)n Simple_repeat Simple_repeat 2 38 0 4906 186 42 1 chr4 32734382 32734721 -151553941 + L1PA16 LINE L1 5836 6160 -6 357 223 25 25 chr4 32735139 32735260 -151553402 + MER113 DNA MER1_type? 26 146 -375 1964 195 68 8 chr4 32735601 32735996 -151552666 - MSTB LTR MaLR -7 419 1 204 67 0 0 chr4 32736046 32736076 -151552586 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 2443 64 0 0 chr4 32736126 32736423 -151552239 - AluY SINE Alu -14 297 1 664 292 126 29 chr4 32736907 32737287 -151551375 - LTR50 LTR ERVL -43 752 336 239 308 77 0 chr4 32737397 32737488 -151551174 - LTR50 LTR ERVL -641 154 57 297 0 0 0 chr4 32737503 32737536 -151551126 + (CA)n Simple_repeat Simple_repeat 1 33 0 188 333 0 0 chr4 32737637 32737694 -151550968 + L3 LINE CR1 618 674 -903 2267 109 0 3 chr4 32737876 32738187 -151550475 + AluY SINE Alu 1 310 -1 377 327 20 33 chr4 32738300 32738453 -151550209 - MIR SINE MIR -8 254 104 1687 90 0 9 chr4 32738454 32738687 -151549975 - L1PA11 LINE L1 0 6174 5944 235 37 0 0 chr4 32738689 32738716 -151549946 + L1P4 LINE L1 5850 5876 -287 1931 231 23 50 chr4 32738818 32739333 -151549329 + MLT1D LTR MaLR 1 501 -4 279 0 0 0 chr4 32739423 32739454 -151549208 + (A)n Simple_repeat Simple_repeat 1 31 0 356 287 117 40 chr4 32739514 32739761 -151548901 + L2 LINE L2 2463 2728 -586 23 86 0 0 chr4 32740010 32740068 -151548594 + AT_rich Low_complexity Low_complexity 1 58 0 461 281 80 61 chr4 32740171 32740355 -151548307 - HAL1 LINE L1 -121 2386 2207 213 65 0 0 chr4 32740355 32740386 -151548276 + (CA)n Simple_repeat Simple_repeat 2 32 0 461 281 80 61 chr4 32740386 32740687 -151547975 - HAL1 LINE L1 -300 2207 1886 216 0 0 0 chr4 32740687 32740711 -151547951 + (CAA)n Simple_repeat Simple_repeat 1 24 0 461 281 80 61 chr4 32740711 32740796 -151547866 - HAL1 LINE L1 -621 1886 1804 5869 223 71 12 chr4 32741265 32742944 -151545718 + L1MA7 LINE L1 3287 5064 -1082 4678 170 26 6 chr4 32742924 32743820 -151544842 + L1MA7 LINE L1 5377 6290 -1 * 35 63 0 0 chr4 32743870 32743933 -151544729 + AT_rich Low_complexity Low_complexity 1 63 0 216 214 0 0 chr4 32743937 32743993 -151544669 + (TATATG)n Simple_repeat Simple_repeat 1 56 0 231 217 0 43 chr4 32744004 32744073 -151544589 + (TA)n Simple_repeat Simple_repeat 2 67 0 1450 186 46 52 chr4 32744084 32744472 -151544190 + L1MB1 LINE L1 5783 6168 0 2881 228 56 22 chr4 32744479 32745447 -151543215 + L1ME1 LINE L1 5154 6148 -18 21 0 0 0 chr4 32745452 32745473 -151543189 + AT_rich Low_complexity Low_complexity 1 21 0 237 33 0 0 chr4 32746702 32746732 -151541930 + (TG)n Simple_repeat Simple_repeat 1 30 0 312 0 62 0 chr4 32747115 32747163 -151541499 + (TCTTG)n Simple_repeat Simple_repeat 2 52 0 * 814 161 0 12 chr4 32747160 32747322 -151541340 + CT-rich Low_complexity Low_complexity 2 161 0 1743 181 13 0 chr4 32747322 32747620 -151541042 - AluJb SINE Alu 0 312 11 285 303 43 93 chr4 32747620 32747782 -151540880 - LTR16B LTR ERVL -310 154 1 610 338 44 51 chr4 32748379 32748967 -151539695 - MERVL LTR ERVL -660 4825 4242 554 304 12 0 chr4 32749135 32749303 -151539359 + ERVL LTR ERVL 2565 2734 -3030 2696 274 45 15 chr4 32749311 32750041 -151538621 + ERVL LTR ERVL 3107 3858 -1906 208 236 18 0 chr4 32750349 32750404 -151538258 + GA-rich Low_complexity Low_complexity 5 60 0 459 199 8 15 chr4 32750870 32751001 -151537661 + (TCTA)n Simple_repeat Simple_repeat 2 131 0 2438 81 0 3 chr4 32751382 32751692 -151536970 - AluY SINE Alu -2 309 1 1366 295 25 48 chr4 32753006 32753611 -151535051 + L2 LINE L2 2552 3149 -164 1406 260 62 34 chr4 32753633 32754099 -151534563 + MLT2B1 LTR ERVL 2 480 -40 255 215 0 0 chr4 32754121 32754186 -151534476 + (TA)n Simple_repeat Simple_repeat 1 65 0 319 282 18 18 chr4 32754280 32754390 -151534272 + L2 LINE L2 3146 3255 -58 22 0 0 0 chr4 32755415 32755437 -151533225 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 32755595 32755620 -151533042 + AT_rich Low_complexity Low_complexity 1 25 0 1786 162 24 27 chr4 32755818 32756194 -151532468 - THE1C LTR MaLR 0 375 1 220 414 40 0 chr4 32756220 32756319 -151532343 + L2 LINE L2 3137 3239 -33 301 311 104 49 chr4 32756659 32756904 -151531758 + MIR SINE MIR 7 262 0 252 333 98 89 chr4 32757307 32757553 -151531109 + L2 LINE L2 2929 3176 -96 2527 99 96 10 chr4 32757740 32758145 -151530517 + LTR7 LTR ERV1 1 440 -10 1978 81 0 0 chr4 32758155 32758427 -151530235 + HERVH LTR ERV1 1 272 -7441 10862 116 21 36 chr4 32758427 32760361 -151528301 + HERVH LTR ERV1 1213 3288 -4425 3963 133 105 29 chr4 32760362 32761749 -151526913 - pTR5 LTR ERV1 0 2606 1524 9929 130 34 17 chr4 32761753 32763376 -151525286 + HERVH LTR ERV1 3500 5149 -2564 2710 92 47 12 chr4 32763393 32763815 -151524847 + HERVH LTR ERV1 7277 7713 0 2485 97 97 7 chr4 32763815 32764226 -151524436 + LTR7 LTR ERV1 1 448 -2 269 281 66 79 chr4 32764843 32764992 -151523670 + MIR SINE MIR 46 194 -63 1397 251 76 21 chr4 32765177 32765507 -151523155 - MLT2F LTR ERVL 0 663 353 342 0 0 0 chr4 32765507 32765545 -151523117 + (CA)n Simple_repeat Simple_repeat 2 39 0 1397 251 76 21 chr4 32765545 32765799 -151522863 - MLT2F LTR ERVL -310 353 1 22 70 0 0 chr4 32767146 32767189 -151521473 + AT_rich Low_complexity Low_complexity 1 43 0 712 284 123 7 chr4 32767221 32767506 -151521156 - LTR50 LTR ERVL -7 788 471 328 230 70 117 chr4 32767618 32767848 -151520814 - LTR50 LTR ERVL -576 219 1 34 0 0 0 chr4 32768293 32768327 -151520335 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr4 32769961 32769992 -151518670 + AT_rich Low_complexity Low_complexity 1 31 0 543 74 0 0 chr4 32770559 32770640 -151518022 - L1PA13 LINE L1 -3 6160 6080 1833 147 25 4 chr4 32770821 32770940 -151517722 + AluSx SINE Alu 1 116 -196 189 0 0 0 chr4 32770940 32770961 -151517701 + (CTA)n Simple_repeat Simple_repeat 1 21 0 1833 147 25 4 chr4 32770961 32771120 -151517542 + AluSx SINE Alu 116 285 -27 828 271 78 8 chr4 32771181 32771661 -151517001 - L1MD2 LINE L1 -54 6699 6036 682 191 0 18 chr4 32771710 32771878 -151516784 + C-rich Low_complexity Low_complexity 2 166 0 6355 254 66 35 chr4 32771924 32775552 -151513110 - L1MD2 LINE L1 -743 5797 2235 227 244 0 0 chr4 32775798 32775843 -151512819 + MIR SINE MIR 189 233 -29 372 367 114 8 chr4 32776094 32776358 -151512304 + LTR16A LTR ERVL 159 450 0 1479 186 20 57 chr4 32776894 32777248 -151511414 - MLT1B LTR MaLR -49 341 1 5576 112 25 2 chr4 32777685 32778582 -151510080 - L1PA13 LINE L1 -4 6159 5060 1835 185 180 5 chr4 32778581 32779019 -151509643 + L1PA13 LINE L1 4520 5034 -1112 * 14174 194 29 9 chr4 32779305 32785262 -151503400 - L1PB1 LINE L1 -1 6866 636 1062 130 76 0 chr4 32785264 32785449 -151503213 - L1PB1 LINE L1 -6663 200 2 269 307 11 11 chr4 32785678 32785766 -151502896 + CT-rich Low_complexity Low_complexity 4 91 0 363 242 108 0 chr4 32786063 32786183 -151502479 - MER115 DNA AcHobo -12 681 549 491 369 25 41 chr4 32786321 32786635 -151502027 - MER115 DNA AcHobo -323 370 62 2405 161 16 32 chr4 32788650 32789045 -151499617 - Tigger2a DNA MER2_type -2275 433 44 2172 106 0 7 chr4 32789045 32789347 -151499315 + AluY SINE Alu 3 302 -9 2405 161 16 32 chr4 32789347 32789391 -151499271 - Tigger2a DNA MER2_type -2664 44 1 25 83 0 0 chr4 32789581 32789641 -151499021 + AT_rich Low_complexity Low_complexity 1 60 0 263 203 8 25 chr4 32790218 32790336 -151498326 + (TA)n Simple_repeat Simple_repeat 2 117 0 182 133 33 33 chr4 32791509 32791569 -151497093 + (CATATA)n Simple_repeat Simple_repeat 5 64 0 189 382 32 49 chr4 32793387 32793510 -151495152 + L2 LINE L2 3193 3313 0 654 228 110 14 chr4 32793696 32793915 -151494747 - LTR18B LTR ERVL -9 605 366 728 271 59 20 chr4 32793976 32794179 -151494483 - LTR18A LTR ERVL -146 211 1 297 182 0 0 chr4 32794286 32794330 -151494332 - HERVL18 LTR ERVL -874 5173 5130 * 2357 152 18 18 chr4 32794323 32794672 -151493990 - HERVL18 LTR ERVL -1266 4781 4430 3101 63 78 2 chr4 32794672 32795085 -151493577 - MLT2A1 LTR ERVL 0 444 1 2357 152 18 18 chr4 32795085 32795123 -151493539 - HERVL18 LTR ERVL -1616 4431 4394 9524 143 16 11 chr4 32795125 32796579 -151492083 - HERVL18 LTR ERVL -2468 3579 2119 1413 171 3 21 chr4 32796578 32796940 -151491722 - HERVL18 LTR ERVL -4237 1810 1340 * 1460 187 34 4 chr4 32796942 32797210 -151491452 - HERVL18 LTR ERVL -5304 743 468 1205 190 7 1 chr4 32797200 32797471 -151491191 - HERVL18 LTR ERVL -5743 304 1 * 723 241 109 45 chr4 32797471 32797791 -151490871 - LTR18A LTR ERVL 0 357 20 292 159 0 0 chr4 32797793 32797837 -151490825 - LTR18A LTR ERVL -313 44 1 24 0 0 0 chr4 32798649 32798673 -151489989 + AT_rich Low_complexity Low_complexity 1 24 0 841 321 63 46 chr4 32800201 32800860 -151487802 - L2 LINE L2 -88 3225 2541 1038 242 50 14 chr4 32800883 32801160 -151487502 - L1MA10 LINE L1 -16 6318 6032 496 335 112 0 chr4 32801322 32801555 -151487107 - L2 LINE L2 -1218 2096 1838 1349 288 66 84 chr4 32802110 32803142 -151485520 + L2 LINE L2 2292 3305 -8 211 239 36 116 chr4 32803156 32803294 -151485368 - MIR SINE MIR -65 197 71 7471 33 0 1 chr4 32803330 32804738 -151483924 + L1PA3 LINE L1 4771 6177 0 22 0 0 0 chr4 32805175 32805197 -151483465 + AT_rich Low_complexity Low_complexity 1 22 0 2064 109 0 11 chr4 32806090 32806375 -151482287 - AluSc SINE Alu -8 301 20 22 35 0 0 chr4 32806641 32806670 -151481992 + AT_rich Low_complexity Low_complexity 1 29 0 291 130 0 0 chr4 32807242 32807296 -151481366 + (CAT)n Simple_repeat Simple_repeat 3 56 0 232 309 47 73 chr4 32807444 32807635 -151481027 + MIR SINE MIR 53 238 -24 496 233 106 42 chr4 32808040 32808229 -151480433 + MIR SINE MIR 13 213 -49 252 326 52 30 chr4 32808867 32809002 -151479660 + L2 LINE L2 3175 3312 -1 214 184 0 0 chr4 32809382 32809420 -151479242 + MIR SINE MIR 80 117 -145 430 307 22 0 chr4 32809461 32809598 -151479064 + MIR SINE MIR 79 218 -44 1143 212 81 28 chr4 32811422 32811818 -151476844 - Charlie1 DNA MER1_type -2 2759 2343 241 302 0 16 chr4 32811817 32811880 -151476782 - Charlie1 DNA MER1_type -2691 70 9 * 419 345 65 0 chr4 32811982 32812182 -151476480 - MIR SINE MIR -44 218 6 1349 228 12 0 chr4 32812484 32812739 -151475923 + Tigger7 DNA MER2_type 10 267 -466 322 200 0 0 chr4 32812738 32812793 -151475869 + Tigger7 DNA MER2_type 2394 2448 -43 * 264 370 40 23 chr4 32813632 32813805 -151474857 - MLT1J LTR MaLR -94 417 242 188 356 25 25 chr4 32814010 32814128 -151474534 - L2 LINE L2 0 3313 3196 3804 250 21 9 chr4 32814128 32815291 -151473371 - L1P LINE L1 -2481 3665 2489 561 186 103 26 chr4 32815302 32815458 -151473204 + L1 LINE L1 3658 3825 -2321 * 3482 213 32 10 chr4 32815432 32816312 -151472350 + L1MA2 LINE L1 2958 3856 -2290 5869 163 46 4 chr4 32816316 32817825 -151470837 + L1MA2 LINE L1 4720 6297 -7 6069 191 20 30 chr4 32817834 32818174 -151470488 + L1PA15 LINE L1 3775 4117 -2048 2145 182 39 10 chr4 32818174 32818586 -151470076 - MSTA LTR MaLR 0 428 5 8573 183 36 10 chr4 32818588 32818672 -151469990 - MSTA-int LTR MaLR 0 1651 1571 2145 116 0 23 chr4 32818672 32818843 -151469819 - AluSp SINE Alu -17 296 133 180 0 0 0 chr4 32818843 32818863 -151469799 + (TA)n Simple_repeat Simple_repeat 1 20 0 2145 116 0 23 chr4 32818863 32818993 -151469669 - AluSp SINE Alu -180 133 2 8573 183 36 10 chr4 32818993 32820517 -151468145 - MSTA-int LTR MaLR -80 1571 1 2099 168 75 10 chr4 32820517 32820917 -151467745 - MSTA LTR MaLR 0 428 3 6069 191 20 30 chr4 32820917 32821015 -151467647 + L1PA15 LINE L1 4117 4214 -1951 1936 135 7 0 chr4 32821015 32821297 -151467365 - AluSx SINE Alu -17 295 12 6069 191 20 30 chr4 32821297 32821617 -151467045 + L1PA15 LINE L1 4214 4536 -1629 1792 159 24 0 chr4 32821617 32821907 -151466755 + AluSx SINE Alu 3 299 -13 6069 191 20 30 chr4 32821907 32822881 -151465781 + L1PA15 LINE L1 4536 5483 -682 2227 87 0 13 chr4 32822881 32823192 -151465470 + AluY SINE Alu 1 307 -4 6069 191 20 30 chr4 32823192 32823863 -151464799 + L1PA15 LINE L1 5483 6159 -6 369 315 173 21 chr4 32823890 32824281 -151464381 - L2 LINE L2 -135 3178 2733 221 336 112 0 chr4 32824415 32824522 -151464140 - MIR SINE MIR -95 167 49 557 177 93 0 chr4 32824586 32824617 -151464045 - L1MB1 LINE L1 -331 5837 5810 330 26 0 0 chr4 32824617 32824656 -151464006 + (TA)n Simple_repeat Simple_repeat 2 40 0 557 177 93 0 chr4 32824656 32824764 -151463898 - L1MB1 LINE L1 -358 5810 5669 3760 202 48 1 chr4 32824766 32825523 -151463139 + MER6 DNA MER2_type 70 861 -4 2753 245 29 7 chr4 32825524 32826364 -151462298 - L1 LINE L1 -2396 3814 2957 10392 181 31 8 chr4 32826373 32828595 -151460067 - L1MA2 LINE L1 0 7723 5404 2173 107 0 16 chr4 32828595 32828904 -151459758 - AluSc SINE Alu -5 304 1 10392 181 31 8 chr4 32828904 32829995 -151458667 - L1MA2 LINE L1 -2319 5404 4339 5123 214 23 13 chr4 32829991 32831044 -151457618 - L1MA2 LINE L1 -6487 1078 16 * 4555 260 82 38 chr4 32831048 32832694 -151455968 - L1 LINE L1 -3233 2977 1404 222 91 0 0 chr4 32832694 32832727 -151455935 + (TG)n Simple_repeat Simple_repeat 2 34 0 4555 260 82 38 chr4 32832727 32832943 -151455719 - L1 LINE L1 -4806 1404 1199 192 40 0 0 chr4 32832943 32832968 -151455694 + (TC)n Simple_repeat Simple_repeat 2 26 0 4555 260 82 38 chr4 32832968 32834265 -151454397 - L1 LINE L1 -5011 1199 3 327 49 0 0 chr4 32834889 32834930 -151453732 + (CA)n Simple_repeat Simple_repeat 2 42 0 284 299 0 0 chr4 32835406 32835483 -151453179 - MLT1L LTR MaLR -536 79 3 261 298 164 19 chr4 32835501 32835605 -151453057 + MIR SINE MIR 49 167 -95 484 193 0 55 chr4 32835619 32835728 -151452934 + FLAM_C SINE Alu 39 141 -2 23 33 0 0 chr4 32835728 32835758 -151452904 + AT_rich Low_complexity Low_complexity 1 30 0 21 71 0 0 chr4 32836047 32836089 -151452573 + AT_rich Low_complexity Low_complexity 1 42 0 404 329 81 24 chr4 32836473 32836719 -151451943 - MIR SINE MIR 0 262 3 28 61 0 0 chr4 32837576 32837625 -151451037 + AT_rich Low_complexity Low_complexity 1 49 0 975 201 80 128 chr4 32838075 32838474 -151450188 - MER67C LTR ERV1 -2 512 95 2076 98 3 7 chr4 32838474 32838759 -151449903 + AluSx SINE Alu 13 296 -16 438 20 0 0 chr4 32838768 32838819 -151449843 + (CA)n Simple_repeat Simple_repeat 2 52 0 975 201 80 128 chr4 32838819 32838936 -151449726 - MER67C LTR ERV1 -427 87 11 564 40 0 0 chr4 32839682 32839756 -151448906 + AluY SINE Alu 231 304 -8 393 75 0 0 chr4 32839756 32839809 -151448853 + (TA)n Simple_repeat Simple_repeat 2 54 0 27 0 0 0 chr4 32839881 32839908 -151448754 + AT_rich Low_complexity Low_complexity 1 27 0 1547 90 0 0 chr4 32840006 32840206 -151448456 - AluSc SINE Alu -22 287 88 915 105 7 14 chr4 32840206 32840349 -151448313 + AluSg/x SINE Alu 170 311 -1 205 284 148 11 chr4 32840349 32840437 -151448225 - L2 LINE L2 -589 2725 2626 286 292 76 40 chr4 32843054 32843355 -151445307 - L1ME4a LINE L1 -181 5940 5629 213 186 17 17 chr4 32844985 32845044 -151443618 + (TA)n Simple_repeat Simple_repeat 1 59 0 939 201 70 5 chr4 32845525 32845724 -151442938 - AluJb SINE Alu -16 296 85 253 317 21 35 chr4 32846673 32846815 -151441847 - L2 LINE L2 -1067 2247 2108 21 89 0 0 chr4 32846924 32846980 -151441682 + AT_rich Low_complexity Low_complexity 1 56 0 3246 100 7 0 chr4 32847173 32847623 -151441039 + MLT2A2 LTR ERVL 1 453 0 21 95 0 0 chr4 32848397 32848460 -151440202 + AT_rich Low_complexity Low_complexity 1 63 0 22 70 0 0 chr4 32849637 32849680 -151438982 + AT_rich Low_complexity Low_complexity 1 43 0 445 311 68 37 chr4 32850217 32850645 -151438017 + L1MDa LINE L1 1534 1974 -4566 4216 40 28 4 chr4 32850679 32851208 -151437454 - L1PA5 LINE L1 0 6154 5613 22 35 0 0 chr4 32851439 32851468 -151437194 + AT_rich Low_complexity Low_complexity 1 29 0 348 346 64 26 chr4 32852076 32852342 -151436320 + L1ME LINE L1 5530 5805 -316 7333 197 39 18 chr4 32852351 32854295 -151434367 + L1PB4 LINE L1 3488 5480 -744 2670 196 22 75 chr4 32854409 32855127 -151433535 + L1PB4 LINE L1 5476 6155 -1 315 173 63 16 chr4 32855380 32855507 -151433155 + (TA)n Simple_repeat Simple_repeat 1 133 0 322 266 43 103 chr4 32855553 32855737 -151432925 + MIR SINE MIR 46 218 -44 2044 142 0 0 chr4 32855866 32856176 -151432486 - AluSx SINE Alu -2 310 1 1844 118 73 0 chr4 32856920 32857209 -151431453 - AluSx SINE Alu -2 310 1 21 36 0 0 chr4 32859766 32859794 -151428868 + AT_rich Low_complexity Low_complexity 1 28 0 12408 123 15 29 chr4 32859820 32860881 -151427781 + L1PA6 LINE L1 11 1031 -5115 2238 100 3 3 chr4 32860881 32861190 -151427472 - AluY SINE Alu 0 311 3 12408 123 15 29 chr4 32861190 32862150 -151426512 + L1PA6 LINE L1 1031 2003 -4143 16695 76 1 0 chr4 32862150 32865202 -151423460 + L1PA6 LINE L1 3091 6153 -1 2266 267 63 36 chr4 32865202 32865959 -151422703 + L1MC/D LINE L1 113 890 -5969 1199 197 29 0 chr4 32865959 32866203 -151422459 - MER57A LTR ERV1 0 403 153 2353 146 5 8 chr4 32866203 32866579 -151422083 - THE1C LTR MaLR 0 375 1 9847 129 42 3 chr4 32866588 32868096 -151420566 - THE1C-int LTR MaLR -10 1570 4 2432 118 5 13 chr4 32868096 32868470 -151420192 - THE1C LTR MaLR -4 371 1 717 183 0 0 chr4 32868474 32868600 -151420062 - MER57A LTR ERV1 -250 153 28 3118 213 51 20 chr4 32868601 32869522 -151419140 + L1MC/D LINE L1 922 1868 -4987 835 225 62 0 chr4 32869532 32869710 -151418952 - MLT1D LTR MaLR 0 505 317 57 61 0 0 chr4 32870227 32870326 -151418336 + AT_rich Low_complexity Low_complexity 1 99 0 584 246 39 35 chr4 32871205 32871461 -151417201 + L1MC/D LINE L1 3301 3557 -3400 466 77 0 0 chr4 32871462 32871527 -151417135 + L1PA4 LINE L1 6083 6147 -8 607 229 84 49 chr4 32871531 32871918 -151416744 + L1MC/D LINE L1 3662 4039 -2918 * 1913 179 99 11 chr4 32871890 32872326 -151416336 + L1MC/D LINE L1 6065 6538 -515 2082 124 0 0 chr4 32872693 32872992 -151415670 - AluSc SINE Alu -10 299 1 238 317 166 55 chr4 32873109 32873391 -151415271 + L2 LINE L2 1836 2176 -1138 1959 155 0 13 chr4 32873391 32873708 -151414954 - AluSq SINE Alu 0 313 1 238 317 166 55 chr4 32873708 32873823 -151414839 + L2 LINE L2 2176 2277 -1037 2267 92 0 16 chr4 32874059 32874364 -151414298 + AluSg SINE Alu 1 300 -10 587 287 70 41 chr4 32874481 32874725 -151413937 - MIR SINE MIR 0 262 12 201 250 73 15 chr4 32874844 32874912 -151413750 + L3 LINE CR1 215 286 -1291 304 347 79 32 chr4 32875903 32876272 -151412390 - L2 LINE L2 -2 3311 2926 306 177 25 13 chr4 32877039 32877118 -151411544 + L1MD1 LINE L1 6152 6231 -11 362 270 70 87 chr4 32877143 32877328 -151411334 + MLT1G LTR MaLR 92 273 -317 212 308 0 0 chr4 32877572 32877637 -151411025 + CT-rich Low_complexity Low_complexity 3 67 0 1451 335 101 44 chr4 32877796 32878974 -151409688 - L2 LINE L2 -297 3016 1764 205 211 0 0 chr4 32879038 32879076 -151409586 - MIR SINE MIR -108 154 117 199 171 0 0 chr4 32879856 32879891 -151408771 - L2 LINE L2 0 3272 3238 493 248 47 0 chr4 32879901 32880030 -151408632 - L2 LINE L2 0 3313 3179 641 34 0 22 chr4 32880734 32880823 -151407839 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 274 273 0 11 chr4 32881183 32881271 -151407391 - L1MC4 LINE L1 -1339 6703 6617 664 117 22 39 chr4 32881293 32881473 -151407189 + (TATG)n Simple_repeat Simple_repeat 2 178 0 288 177 52 31 chr4 32881473 32881569 -151407093 + (TATATG)n Simple_repeat Simple_repeat 5 102 0 250 138 35 17 chr4 32881569 32881627 -151407035 - L1MCa LINE L1 -4362 2064 2006 229 191 0 0 chr4 32881608 32881655 -151407007 - L1MC4 LINE L1 -1339 6703 6657 * 250 313 71 36 chr4 32881667 32881779 -151406883 - MIR SINE MIR -72 190 75 2410 144 44 2 chr4 32882057 32882468 -151406194 - MSTA LTR MaLR 0 428 1 309 277 20 10 chr4 32882473 32882574 -151406088 + L1MEd LINE L1 57 158 -5961 254 231 65 112 chr4 32882618 32882787 -151405875 + L1MEd LINE L1 274 434 -5685 218 298 21 32 chr4 32884011 32884105 -151404557 - L2 LINE L2 -87 3226 3134 217 93 23 23 chr4 32884973 32885016 -151403646 + (TA)n Simple_repeat Simple_repeat 1 43 0 21 36 0 0 chr4 32886780 32886808 -151401854 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 32887218 32887241 -151401421 + AT_rich Low_complexity Low_complexity 1 23 0 594 273 53 19 chr4 32887526 32887735 -151400927 - MER20 DNA MER1_type 0 219 4 376 254 189 6 chr4 32887814 32887983 -151400679 + Charlie2 DNA MER1_type 318 517 -2265 487 133 0 20 chr4 32888014 32888112 -151400550 + (GGAA)n Simple_repeat Simple_repeat 3 98 0 661 104 0 17 chr4 32888220 32888335 -151400327 + (GGAA)n Simple_repeat Simple_repeat 3 115 0 2150 131 0 0 chr4 32889366 32889678 -151398984 - AluSx SINE Alu 0 312 1 319 243 0 14 chr4 32890640 32890714 -151397948 + Tigger5 DNA MER2_type 7 79 -2244 401 213 25 0 chr4 32890763 32890843 -151397819 + Tigger5 DNA MER2_type 2242 2323 0 387 41 0 0 chr4 32891063 32891112 -151397550 + (CA)n Simple_repeat Simple_repeat 2 50 0 459 152 0 0 chr4 32892687 32892766 -151395896 + (TG)n Simple_repeat Simple_repeat 2 80 0 27 49 0 0 chr4 32893112 32893153 -151395509 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr4 32893647 32893672 -151394990 + AT_rich Low_complexity Low_complexity 1 25 0 2018 117 3 7 chr4 32893826 32894116 -151394546 - AluSq SINE Alu -24 289 1 1295 180 63 4 chr4 32894175 32894414 -151394248 - AluJo SINE Alu -47 265 13 738 250 47 5 chr4 32894441 32894633 -151394029 + L1M4c LINE L1 17 216 -6168 4406 147 90 35 chr4 32894633 32895642 -151393020 + pTR5 LTR ERV1 743 2021 -417 322 257 10 0 chr4 32895643 32895744 -151392918 + LTR30 LTR ERV1 541 642 -80 2314 93 0 0 chr4 32895744 32896067 -151392595 + pTR5 LTR ERV1 66 388 -2050 1558 210 44 26 chr4 32896067 32896410 -151392252 + L1M4c LINE L1 209 557 -5827 692 94 17 3 chr4 32896422 32896657 -151392005 + AluSx SINE Alu 1 297 -15 694 122 0 0 chr4 32896700 32896807 -151391855 + AluSg/x SINE Alu 203 309 0 895 188 30 20 chr4 32896809 32897006 -151391656 + L1M4c LINE L1 570 768 -5616 1291 248 39 3 chr4 32897006 32897292 -151391370 + MLT1A1 LTR MaLR 1 296 -69 1290 214 33 85 chr4 32897292 32897690 -151390972 + MLT2B3 LTR ERVL 1 377 -177 2056 99 0 64 chr4 32897692 32897880 -151390782 - AluSx SINE Alu -3 309 111 213 45 45 23 chr4 32897880 32897924 -151390738 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 2178 90 0 0 chr4 32897924 32898202 -151390460 - AluY SINE Alu -30 281 4 2056 99 0 64 chr4 32898202 32898324 -151390338 - AluSx SINE Alu -199 113 18 4238 102 23 58 chr4 32898410 32899743 -151388919 - pTR5 LTR ERV1 0 2468 1524 279 0 0 0 chr4 32901619 32901650 -151387012 + (TG)n Simple_repeat Simple_repeat 2 32 0 503 198 16 8 chr4 32901839 32901965 -151386697 - L1 LINE L1 -804 5342 5216 383 179 0 12 chr4 32901953 32902037 -151386625 - L1M4c LINE L1 -5190 1194 1112 * 2792 230 19 20 chr4 32902027 32902501 -151386161 + L1MC3 LINE L1 7066 7540 -245 1904 154 12 35 chr4 32902501 32902846 -151385816 - MER1B DNA MER1_type 0 337 1 2792 230 19 20 chr4 32902846 32903075 -151385587 + L1MC3 LINE L1 7540 7768 -17 1347 195 61 0 chr4 32903092 32903293 -151385369 + L1 LINE L1 4234 4421 -1725 2164 118 7 0 chr4 32903293 32903597 -151385065 + AluSp SINE Alu 1 306 -7 1347 195 61 0 chr4 32903597 32903754 -151384908 + L1 LINE L1 4421 4614 -1532 969 261 12 0 chr4 32903754 32903999 -151384663 + L1MB3 LINE L1 4013 4260 -1886 719 257 0 11 chr4 32904013 32904196 -151384466 + L1MB3 LINE L1 4735 4915 -1231 1545 249 2 2 chr4 32904198 32904592 -151384070 - L1 LINE L1 -979 5167 4774 317 250 40 0 chr4 32904608 32904708 -151383954 + L1MB3 LINE L1 5579 5682 -489 10485 147 40 30 chr4 32904709 32906626 -151382036 - Tigger1 DNA MER2_type 0 2418 483 240 266 64 11 chr4 32906650 32906676 -151381986 - L1MA4A LINE L1 -15 6288 6263 3671 179 29 8 chr4 32906676 32907424 -151381238 - L1PB4 LINE L1 -23 6133 5370 879 166 13 0 chr4 32907425 32907576 -151381086 - Tigger1 DNA MER2_type -1936 482 330 827 215 31 20 chr4 32907574 32907769 -151380893 - Tigger1 DNA MER2_type -2221 197 1 * 2267 164 17 54 chr4 32907769 32908226 -151380436 + L1MB3 LINE L1 5682 6119 -64 2064 134 10 0 chr4 32908226 32908524 -151380138 + AluSx SINE Alu 1 301 -11 2267 164 17 54 chr4 32908524 32908583 -151380079 + L1MB3 LINE L1 6119 6179 -4 278 344 36 18 chr4 32908646 32909036 -151379626 + L1 LINE L1 3842 4238 -1908 362 248 41 25 chr4 32909301 32909422 -151379240 + L1ME2 LINE L1 3602 3724 -2422 2743 277 78 23 chr4 32909447 32911113 -151377549 + L1ME2 LINE L1 3807 5563 -601 2026 160 6 17 chr4 32911113 32911464 -151377198 + THE1C LTR MaLR 1 401 -27 441 87 0 14 chr4 32911572 32911641 -151377021 - L1PB1 LINE L1 -28 6123 6056 3124 217 18 3 chr4 32911644 32912372 -151376290 + L1 LINE L1 4663 5401 -745 1097 217 114 89 chr4 32912394 32912471 -151376191 + L1ME2 LINE L1 5539 5613 -551 186 103 0 0 chr4 32912471 32912500 -151376162 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1097 217 114 89 chr4 32912500 32912576 -151376086 + L1ME2 LINE L1 5613 5686 -478 1894 119 0 0 chr4 32912576 32912829 -151375833 + AluSg SINE Alu 1 253 -57 1097 217 114 89 chr4 32912829 32913238 -151375424 + L1ME2 LINE L1 5686 6143 -21 811 260 215 16 chr4 32913261 32913395 -151375267 + L1MC4 LINE L1 6473 6579 -1463 288 0 0 0 chr4 32913395 32913427 -151375235 + (TG)n Simple_repeat Simple_repeat 1 32 0 811 260 215 16 chr4 32913427 32913789 -151374873 + L1MC4 LINE L1 6579 7068 -974 201 74 0 0 chr4 32913790 32913817 -151374845 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1050 262 123 62 chr4 32913873 32914659 -151374003 + L1MC4 LINE L1 7209 8042 0 2019 179 41 24 chr4 32914669 32915171 -151373491 + MLT2A2 LTR ERVL 1 510 -44 235 132 26 92 chr4 32915169 32915245 -151373417 + MLT2C2 LTR ERVL 393 463 -1 * 376 242 58 127 chr4 32915286 32915546 -151373116 + HAL1 LINE L1 378 619 -1888 405 254 65 7 chr4 32915669 32915807 -151372855 + L2 LINE L2 2376 2521 -793 273 303 36 51 chr4 32915907 32916102 -151372560 + L2 LINE L2 3119 3310 -3 242 306 111 9 chr4 32916285 32916393 -151372269 - MIR SINE MIR -72 190 72 1998 220 82 11 chr4 32916411 32917169 -151371493 - L1ME1 LINE L1 -3 6581 5740 2774 259 45 38 chr4 32917249 32918628 -151370034 - L1ME1 LINE L1 -2691 3873 2526 729 284 68 46 chr4 32918813 32919309 -151369353 - L1MC4a LINE L1 -303 5818 5392 957 356 141 22 chr4 32919339 32920339 -151368323 - L3 LINE CR1 -166 1411 293 948 82 8 0 chr4 32920369 32920503 -151368159 - L1PB1 LINE L1 0 6151 6017 2717 251 67 13 chr4 32920503 32921633 -151367029 - L1ME1 LINE L1 -4605 1959 671 278 250 15 0 chr4 32921634 32921702 -151366960 + L1M4b LINE L1 435 503 -6356 554 294 68 36 chr4 32921735 32921987 -151366675 + MIR SINE MIR 1 260 -2 22 0 0 0 chr4 32921991 32922013 -151366649 + AT_rich Low_complexity Low_complexity 1 22 0 774 202 6 17 chr4 32922119 32922292 -151366370 + LTR56 LTR ERV1 10 180 -265 191 307 67 13 chr4 32922293 32922368 -151366294 - MER5A DNA MER1_type -103 86 8 342 0 0 0 chr4 32923717 32923755 -151364907 + (CA)n Simple_repeat Simple_repeat 1 38 0 21 89 0 0 chr4 32924960 32925016 -151363646 + AT_rich Low_complexity Low_complexity 1 56 0 2239 111 0 0 chr4 32925218 32925525 -151363137 + AluY SINE Alu 1 307 -4 778 310 43 21 chr4 32926529 32926858 -151361804 - MLT1I LTR MaLR -55 354 19 1709 195 76 22 chr4 32926974 32927380 -151361282 - MSTA LTR MaLR 0 428 1 313 316 14 18 chr4 32927873 32928091 -151360571 + L1 LINE L1 3884 4100 -2046 285 305 42 0 chr4 32928189 32928284 -151360378 + L2 LINE L2 2293 2391 -923 286 265 100 41 chr4 32928290 32928460 -151360202 - MLT1F1 LTR MaLR -5 562 383 25 0 0 0 chr4 32928583 32928608 -151360054 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr4 32928794 32928817 -151359845 + AT_rich Low_complexity Low_complexity 1 23 0 203 233 47 12 chr4 32928985 32929071 -151359591 + (TTATA)n Simple_repeat Simple_repeat 2 90 0 932 259 27 23 chr4 32929094 32929357 -151359305 - L1ME LINE L1 -345 5776 5513 22 0 0 0 chr4 32929552 32929574 -151359088 + AT_rich Low_complexity Low_complexity 1 22 0 206 202 37 55 chr4 32929612 32929721 -151358941 + T-rich Low_complexity Low_complexity 3 109 0 504 165 0 0 chr4 32929779 32929892 -151358770 - AluSg/x SINE Alu 0 309 197 183 261 34 80 chr4 32932673 32932761 -151355901 - MIR3 SINE MIR -17 191 108 1657 143 56 0 chr4 32932991 32933321 -151355341 - AluSx SINE Alu 0 345 1 313 300 0 0 chr4 32933322 32933392 -151355270 + Tigger5 DNA MER2_type 2254 2323 0 686 270 92 65 chr4 32933931 32934728 -151353934 - L1ME LINE L1 -1235 4911 4094 395 306 25 16 chr4 32934839 32934960 -151353702 - L2 LINE L2 -1 3312 3191 394 321 57 28 chr4 32935700 32936301 -151352361 - L1ME LINE L1 -2404 3742 3125 206 31 0 31 chr4 32937875 32937907 -151350755 + (TTATA)n Simple_repeat Simple_repeat 2 32 0 830 209 0 0 chr4 32937907 32938055 -151350607 - FRAM SINE Alu -29 147 1 3039 177 9 2 chr4 32938078 32938610 -151350052 - L1PA16 LINE L1 -1 6165 5630 2258 137 14 13 chr4 32938610 32939076 -151349586 + L1PA16 LINE L1 5158 5625 -541 24 32 0 0 chr4 32940069 32940100 -151348562 + AT_rich Low_complexity Low_complexity 1 31 0 354 372 25 15 chr4 32940130 32940326 -151348336 - MIR SINE MIR -58 204 7 21 0 0 0 chr4 32940370 32940391 -151348271 + AT_rich Low_complexity Low_complexity 1 21 0 198 301 39 48 chr4 32940417 32940520 -151348142 - MIR SINE MIR -48 214 113 225 163 0 0 chr4 32940810 32940859 -151347803 + (CA)n Simple_repeat Simple_repeat 2 50 0 455 320 7 0 chr4 32941150 32941297 -151347365 - L3 LINE CR1 -154 1423 1276 2355 35 0 3 chr4 32941621 32941905 -151346757 + L1PA3 LINE L1 5870 6152 -3 636 230 69 39 chr4 32942065 32942269 -151346393 - MER76 LTR ERV 0 688 479 383 254 6 95 chr4 32942285 32942454 -151346208 + MLT1H LTR MaLR 394 547 -2 2175 121 0 0 chr4 32942642 32942949 -151345713 - AluSg SINE Alu -3 307 1 294 223 170 0 chr4 32943738 32943832 -151344830 + L2 LINE L2 3199 3308 -5 309 222 0 33 chr4 32943872 32943962 -151344700 + GA-rich Low_complexity Low_complexity 2 88 0 322 233 0 35 chr4 32944255 32944341 -151344321 + L2 LINE L2 978 1060 -2254 3679 157 42 10 chr4 32944506 32945201 -151343461 - L1MA2 LINE L1 -1 7722 7006 4001 186 38 2 chr4 32945201 32946039 -151342623 - L1MA2 LINE L1 -920 6645 5778 * 8040 181 56 9 chr4 32946032 32948994 -151339668 - L1MA2 LINE L1 -2272 5293 2184 583 300 39 46 chr4 32999236 32999496 -151289166 + MIR SINE MIR 2 259 -3 332 221 105 0 chr4 32999521 32999607 -151289055 - MSTB1 LTR MaLR 0 432 338 1527 193 129 27 chr4 32999761 33000165 -151288497 - L1MB8 LINE L1 -7 6171 5727 * 3346 261 50 29 chr4 33000158 33001120 -151287542 - L1M4b LINE L1 -5877 982 1 1981 143 3 7 chr4 33001125 33001433 -151287229 + AluSx SINE Alu 5 311 -1 370 176 11 11 chr4 33001433 33001524 -151287138 + GA-rich Low_complexity Low_complexity 2 92 0 267 308 149 0 chr4 33002700 33002807 -151285855 + MIR SINE MIR 20 142 -66 450 53 0 0 chr4 33002961 33003018 -151285644 + (TG)n Simple_repeat Simple_repeat 2 58 0 2237 91 0 28 chr4 33004256 33004576 -151284086 + AluY SINE Alu 1 311 0 202 216 20 0 chr4 33004825 33004876 -151283786 + (CAAG)n Simple_repeat Simple_repeat 1 52 0 1822 116 36 11 chr4 33006066 33006343 -151282319 + AluSx SINE Alu 1 284 -28 228 67 0 0 chr4 33006343 33006373 -151282289 + (CA)n Simple_repeat Simple_repeat 2 31 0 22 80 0 0 chr4 33007549 33007599 -151281063 + AT_rich Low_complexity Low_complexity 1 50 0 2234 93 0 3 chr4 33007738 33008040 -151280622 - AluY SINE Alu -10 301 1 33 0 0 0 chr4 33008153 33008186 -151280476 + AT_rich Low_complexity Low_complexity 1 33 0 564 308 98 44 chr4 33010327 33010983 -151277679 - L2 LINE L2 0 3313 2529 452 294 62 23 chr4 33012266 33012443 -151276219 - MIR SINE MIR -75 187 4 455 333 69 17 chr4 33015792 33016023 -151272639 + MIR SINE MIR 20 262 0 1118 401 39 40 chr4 33016417 33016961 -151271701 + MLT2B3 LTR ERVL 1 543 -11 2375 151 55 5 chr4 33017538 33017942 -151270720 + MER61C LTR ERV1 1 424 -10 1520 219 121 88 chr4 33018447 33019149 -151269513 - MER50 LTR ERV1 0 734 10 2184 110 0 7 chr4 33019401 33019702 -151268960 + AluSx SINE Alu 3 301 -11 23 0 0 0 chr4 33020388 33020411 -151268251 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr4 33022907 33022944 -151265718 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr4 33025090 33025112 -151263550 + AT_rich Low_complexity Low_complexity 1 22 0 201 121 0 0 chr4 33025656 33025689 -151262973 + (T)n Simple_repeat Simple_repeat 1 33 0 893 127 12 12 chr4 33025701 33025874 -151262788 + CT-rich Low_complexity Low_complexity 2 174 0 303 318 72 23 chr4 33027277 33027977 -151260685 + L1MC/D LINE L1 4738 5481 -748 28 0 0 0 chr4 33028410 33028438 -151260224 + AT_rich Low_complexity Low_complexity 1 28 0 229 219 14 55 chr4 33028547 33028620 -151260042 + GA-rich Low_complexity Low_complexity 2 71 0 1598 267 125 29 chr4 33028999 33029996 -151258666 + L1ME1 LINE L1 37 1220 -5176 2176 247 47 24 chr4 33029998 33030816 -151257846 - L1M4 LINE L1 -2159 3987 3152 2058 247 55 67 chr4 33030820 33031175 -151257487 + L1ME1 LINE L1 5189 5547 -856 2493 62 0 0 chr4 33031175 33031484 -151257178 + AluY SINE Alu 1 309 -2 2058 247 55 67 chr4 33031484 33032123 -151256539 + L1ME1 LINE L1 5547 6320 -83 843 197 86 105 chr4 33032123 33032474 -151256188 - MER2 DNA MER2_type 0 344 1 2058 247 55 67 chr4 33032474 33032557 -151256105 + L1ME1 LINE L1 6320 6403 0 1061 123 12 6 chr4 33032756 33032919 -151255743 + AluJb SINE Alu 136 299 -13 1027 189 55 10 chr4 33033073 33033274 -151255388 + MER1B DNA MER1_type 1 210 -87 404 208 0 14 chr4 33033264 33033336 -151255326 + MER1B DNA MER1_type 259 329 0 * 24 0 0 0 chr4 33033510 33033534 -151255128 + AT_rich Low_complexity Low_complexity 1 24 0 242 315 56 0 chr4 33034421 33034510 -151254152 - MIR SINE MIR -68 140 47 1371 199 119 51 chr4 33034559 33034930 -151253732 + MSTD LTR MaLR 1 396 0 668 111 37 0 chr4 33035256 33035364 -151253298 + MER7A DNA MER2_type 59 168 -178 228 111 0 0 chr4 33035678 33035714 -151252948 + (TG)n Simple_repeat Simple_repeat 2 37 0 553 239 33 49 chr4 33035947 33036131 -151252531 + LTR33 LTR ERVL 341 521 0 180 77 0 0 chr4 33036174 33036200 -151252462 + (TA)n Simple_repeat Simple_repeat 1 26 0 195 42 0 0 chr4 33037700 33037724 -151250938 + (A)n Simple_repeat Simple_repeat 1 24 0 1607 239 136 34 chr4 33037949 33038502 -151250160 + MLT1E2 LTR MaLR 18 626 0 192 182 0 0 chr4 33038563 33038607 -151250055 + T-rich Low_complexity Low_complexity 3 46 0 2247 106 0 0 chr4 33038746 33039057 -151249605 - AluY SINE Alu 0 311 1 1920 194 43 61 chr4 33039404 33039910 -151248752 - MLT1D LTR MaLR -8 497 1 348 322 114 14 chr4 33039916 33040139 -151248523 + MIR SINE MIR 20 262 0 21 0 0 0 chr4 33040369 33040390 -151248272 + AT_rich Low_complexity Low_complexity 1 21 0 1802 209 91 9 chr4 33040458 33040888 -151247774 - MLT1C LTR MaLR 0 467 3 8384 208 24 66 chr4 33041094 33041774 -151246888 + L1P3 LINE L1 623 1330 -5131 180 97 0 0 chr4 33041774 33041805 -151246857 + (CAA)n Simple_repeat Simple_repeat 2 32 0 8384 208 24 66 chr4 33041805 33043667 -151244995 + L1P3 LINE L1 1330 3072 -3389 478 82 10 41 chr4 33043768 33043866 -151244796 + (TCC)n Simple_repeat Simple_repeat 3 97 0 574 260 28 77 chr4 33043869 33043998 -151244664 + LTR38B LTR ERV1 42 176 -414 1998 110 0 71 chr4 33043998 33044133 -151244529 + AluY SINE Alu 1 144 -167 2283 78 0 31 chr4 33044133 33044453 -151244209 + AluY SINE Alu 1 310 -1 1998 110 0 71 chr4 33044453 33044643 -151244019 + AluY SINE Alu 144 303 -8 574 260 28 77 chr4 33044643 33044808 -151243854 + LTR38B LTR ERV1 176 348 -242 2488 72 0 0 chr4 33044808 33045113 -151243549 + AluY SINE Alu 5 309 -2 574 260 28 77 chr4 33045113 33045350 -151243312 + LTR38B LTR ERV1 348 590 0 180 0 0 0 chr4 33045464 33045484 -151243178 + (T)n Simple_repeat Simple_repeat 1 20 0 591 92 0 0 chr4 33045828 33045915 -151242747 + (TA)n Simple_repeat Simple_repeat 1 87 0 1223 217 13 107 chr4 33046006 33046398 -151242264 + MLT1A1 LTR MaLR 1 355 -10 1063 299 9 50 chr4 33046495 33046919 -151241743 - MER92B LTR ERV1 -4 632 226 596 264 5 26 chr4 33049577 33049770 -151238892 - MLT1D LTR MaLR -2 503 315 * 787 246 110 92 chr4 33049761 33050054 -151238608 - MLT1E2 LTR MaLR -229 397 94 1674 176 39 59 chr4 33050054 33050492 -151238170 + MSTB1 LTR MaLR 4 432 0 787 246 110 92 chr4 33050492 33050588 -151238074 - MLT1E2 LTR MaLR -532 94 1 2069 185 12 10 chr4 33050664 33051064 -151237598 - MLT2D LTR ERVL -13 401 1 332 288 0 0 chr4 33051121 33051201 -151237461 - MIR SINE MIR -101 161 82 336 381 37 9 chr4 33051542 33051757 -151236905 - LTR16C LTR ERVL 0 491 271 973 225 66 93 chr4 33052176 33052434 -151236228 - MLT1D LTR MaLR -2 503 215 1277 128 74 8 chr4 33052508 33052765 -151235897 - L1MA8 LINE L1 0 6291 6018 21 36 0 0 chr4 33052896 33052924 -151235738 + AT_rich Low_complexity Low_complexity 1 28 0 1450 241 67 75 chr4 33053221 33053765 -151234897 + MER77 LTR ERV1 89 602 -3 229 240 64 123 chr4 33054131 33054335 -151234327 + MLT1H LTR MaLR 229 420 -129 23 33 0 0 chr4 33054727 33054757 -151233905 + AT_rich Low_complexity Low_complexity 1 30 0 1606 180 41 51 chr4 33054995 33055389 -151233273 + MLT1B LTR MaLR 1 390 0 38 0 0 0 chr4 33055639 33055677 -151232985 + AT_rich Low_complexity Low_complexity 1 38 0 1124 204 25 51 chr4 33056445 33056720 -151231942 - MSTD LTR MaLR 0 396 129 615 95 0 38 chr4 33056720 33056825 -151231837 - L1MA2 LINE L1 -157 6147 6047 308 196 0 0 chr4 33056825 33056881 -151231781 - MSTD LTR MaLR -372 56 1 26 64 0 0 chr4 33057774 33057821 -151230841 + AT_rich Low_complexity Low_complexity 1 47 0 352 354 6 0 chr4 33058499 33058660 -151230002 - L1ME LINE L1 -524 5646 5485 4930 72 1 3 chr4 33058697 33059348 -151229314 + L1PA8 LINE L1 5523 6172 0 412 161 11 21 chr4 33059377 33059470 -151229192 - L1MA4A LINE L1 -5 6298 6207 12252 118 14 4 chr4 33060294 33062222 -151226440 - L1P LINE L1 -1453 4693 2747 2414 125 31 19 chr4 33062222 33062270 -151226392 + L1PB1 LINE L1 5732 5778 -373 396 79 13 26 chr4 33062270 33062346 -151226316 + (TA)n Simple_repeat Simple_repeat 1 75 0 2414 125 31 19 chr4 33062346 33062709 -151225953 + L1PB1 LINE L1 5778 6151 0 28 0 0 0 chr4 33063405 33063433 -151225229 + AT_rich Low_complexity Low_complexity 1 28 0 226 337 0 0 chr4 33064189 33064278 -151224384 - L1MC4 LINE L1 -1341 6701 6613 203 152 22 0 chr4 33064286 33064332 -151224330 + (TA)n Simple_repeat Simple_repeat 2 48 0 255 173 0 0 chr4 33064389 33064441 -151224221 + (TA)n Simple_repeat Simple_repeat 1 52 0 208 139 0 0 chr4 33066066 33066102 -151222560 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 2514 143 61 15 chr4 33066273 33066848 -151221814 + MER4E LTR ERV1 1 766 0 839 172 0 0 chr4 33067080 33067225 -151221437 + L1PB1 LINE L1 1 145 -6718 13203 208 73 25 chr4 33067371 33068541 -151220121 + L1PB1 LINE L1 636 1749 -5118 313 83 42 0 chr4 33068541 33068589 -151220073 + LTR2B LTR ERV1 441 490 0 13203 208 73 25 chr4 33068589 33070342 -151218320 + L1PB1 LINE L1 1749 3417 -3450 261 0 0 0 chr4 33070342 33070371 -151218291 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 13203 208 73 25 chr4 33070371 33070384 -151218278 + L1PB1 LINE L1 3417 3428 -3439 198 0 0 0 chr4 33070384 33070406 -151218256 + (TTAAA)n Simple_repeat Simple_repeat 4 25 0 13203 208 73 25 chr4 33070406 33072850 -151215812 + L1PB1 LINE L1 3428 6350 -517 1958 186 87 24 chr4 33072850 33073301 -151215361 + LTR2B LTR ERV1 1 479 -11 3440 111 4 22 chr4 33073301 33073477 -151215185 + L1PB1 LINE L1 6337 6515 -352 282 56 0 0 chr4 33073477 33073513 -151215149 + (CA)n Simple_repeat Simple_repeat 2 37 0 2358 124 31 3 chr4 33073513 33073867 -151214795 + THE1B LTR MaLR 1 364 0 3440 111 4 22 chr4 33073867 33074230 -151214432 + L1PB1 LINE L1 6513 6867 0 297 313 0 0 chr4 33076080 33076163 -151212499 - L2 LINE L2 -4 3309 3227 1771 141 176 3 chr4 33077334 33077697 -151210965 - MSTA LTR MaLR 0 428 3 31 26 0 0 chr4 33077849 33077887 -151210775 + AT_rich Low_complexity Low_complexity 1 38 0 255 312 43 11 chr4 33078201 33078294 -151210368 - L2 LINE L2 -522 2792 2697 3062 193 35 80 chr4 33078324 33079133 -151209529 + L1MC1 LINE L1 45 816 -5610 5345 221 20 20 chr4 33079137 33081109 -151207553 + L1MC1 LINE L1 3986 6087 -526 1961 140 7 0 chr4 33081109 33081417 -151207245 + AluSx SINE Alu 1 310 -2 5345 221 20 20 chr4 33081417 33081905 -151206757 + L1MC1 LINE L1 6087 6574 -39 189 0 0 0 chr4 33081928 33081949 -151206713 + (CA)n Simple_repeat Simple_repeat 1 21 0 490 204 31 31 chr4 33082652 33082814 -151205848 - L1MA7 LINE L1 -17 6274 6113 250 299 28 47 chr4 33083171 33083278 -151205384 - L2 LINE L2 -14 3299 3195 970 164 12 0 chr4 33083581 33083746 -151204916 + L1P LINE L1 3965 4131 -2015 527 117 126 0 chr4 33083754 33083857 -151204805 + L1P LINE L1 5254 5369 -799 * 929 182 0 0 chr4 33083852 33084033 -151204629 - L1P LINE L1 -1598 4548 4368 5564 182 5 9 chr4 33084037 33085151 -151203511 - L1P LINE L1 -897 5249 4140 1260 282 28 25 chr4 33085148 33085676 -151202986 - L1MCa LINE L1 -2443 3983 3454 * 1172 224 104 31 chr4 33085690 33086105 -151202557 - L1MCa LINE L1 -4517 1909 1465 * 1296 129 0 0 chr4 33086094 33086288 -151202374 - L1P LINE L1 -2397 3749 3556 5763 119 13 7 chr4 33086288 33087883 -151200779 + L1PA10 LINE L1 4561 6163 -5 1729 51 0 5 chr4 33087908 33088119 -151200543 + L1PA3 LINE L1 5921 6151 0 204 59 0 29 chr4 33088119 33088153 -151200509 + (TAAAA)n Simple_repeat Simple_repeat 1 140 0 25 51 0 0 chr4 33088256 33088295 -151200367 + AT_rich Low_complexity Low_complexity 1 39 0 351 0 0 0 chr4 33088489 33088528 -151200134 + (TG)n Simple_repeat Simple_repeat 1 39 0 21 57 0 0 chr4 33088717 33088752 -151199910 + AT_rich Low_complexity Low_complexity 1 35 0 2905 103 2 2 chr4 33088752 33089168 -151199494 + L1P4 LINE L1 5352 5767 -407 1960 185 40 32 chr4 33089168 33089714 -151198948 - MLT2A2 LTR ERVL 0 554 1 230 260 0 0 chr4 33089716 33089766 -151198896 + LTR30 LTR ERV1 2 51 -671 1497 104 105 52 chr4 33089767 33090116 -151198546 + LTR12 LTR ERV1 57 277 -437 288 252 58 0 chr4 33090116 33090219 -151198443 + LTR30 LTR ERV1 544 652 -70 688 120 56 78 chr4 33090220 33090362 -151198300 + pTR5 LTR ERV1 306 444 -1994 * 33802 103 19 12 chr4 33090341 33095220 -151193442 + HERV9 LTR ERV1 59 4974 -3425 1929 116 39 9 chr4 33095238 33095574 -151193088 + HERV17 LTR ERV1 704 1049 -7577 1808 85 19 18 chr4 33095561 33095963 -151192699 + HERV17 LTR ERV1 1275 1720 -5176 * 4543 112 2 2 chr4 33095958 33096601 -151192061 + HERV17 LTR ERV1 7757 8399 0 253 231 0 0 chr4 33096601 33096653 -151192009 + LTR30 LTR ERV1 1 52 -670 1543 115 112 49 chr4 33096653 33097002 -151191660 + LTR12 LTR ERV1 57 2021 -417 286 206 37 56 chr4 33097002 33097110 -151191552 + LTR30 LTR ERV1 375 475 -94 547 135 0 0 chr4 33097110 33097184 -151191478 + LTR12 LTR ERV1 622 695 -19 1247 102 33 0 chr4 33097184 33097387 -151191275 + L1PA13 LINE L1 5732 5953 -178 1148 83 24 0 chr4 33097487 33097655 -151191007 + L1PA13 LINE L1 5992 6163 0 24 32 0 0 chr4 33098045 33098076 -151190586 + AT_rich Low_complexity Low_complexity 1 31 0 35 83 0 0 chr4 33098999 33099083 -151189579 + AT_rich Low_complexity Low_complexity 1 84 0 498 256 0 0 chr4 33099399 33099639 -151189023 + (TG)n Simple_repeat Simple_repeat 1 240 0 422 258 219 19 chr4 33099736 33099891 -151188771 + MER5A DNA MER1_type 4 189 0 281 299 160 14 chr4 33100905 33101049 -151187613 - MIR SINE MIR -32 230 66 1183 197 17 133 chr4 33102173 33102585 -151186077 - MLT1A1 LTR MaLR -1 364 1 453 247 0 0 chr4 33102685 33102766 -151185896 + Tigger3(Golem) DNA MER2_type 2 82 -2947 28 0 0 0 chr4 33102828 33102856 -151185806 + AT_rich Low_complexity Low_complexity 1 28 0 1443 216 3 7 chr4 33102860 33103142 -151185520 - AluJo SINE Alu -31 281 1 1567 170 21 7 chr4 33103142 33103425 -151185237 + Tigger3(Golem) DNA MER2_type 2741 3027 -2 214 315 0 14 chr4 33103538 33103611 -151185051 - MIR SINE MIR -42 220 149 1267 223 95 5 chr4 33103716 33104114 -151184548 - MER69 DNA AcHobo 0 2526 2093 1658 199 40 16 chr4 33104114 33104485 -151184177 - MLT1B LTR MaLR 0 390 11 247 223 75 21 chr4 33104491 33104585 -151184077 - MER69 DNA AcHobo -429 2097 1999 439 276 21 7 chr4 33104591 33104736 -151183926 - MER69 DNA AcHobo -1746 780 634 359 263 91 29 chr4 33105076 33105251 -151183411 + L1MC/D LINE L1 36 221 -6175 1136 263 67 14 chr4 33105366 33105875 -151182787 + L1MC/D LINE L1 646 1181 -5215 436 278 12 12 chr4 33105983 33106156 -151182506 + L1M4 LINE L1 4535 4707 -1439 * 3078 251 53 10 chr4 33106123 33107142 -151181520 + L1MC/D LINE L1 3488 4550 -1665 3740 144 31 0 chr4 33108117 33108723 -151179939 - MER39B LTR ERV1 -28 625 1 489 287 35 11 chr4 33109627 33109801 -151178861 + L1MC4a LINE L1 6725 6902 -906 192 182 0 0 chr4 33109876 33109920 -151178742 + (TG)n Simple_repeat Simple_repeat 1 44 0 229 300 40 0 chr4 33109931 33110031 -151178631 + L1MC4 LINE L1 7216 7319 -723 358 262 124 0 chr4 33110268 33110413 -151178249 + L1MC4 LINE L1 7807 7969 -73 611 324 115 28 chr4 33110649 33110984 -151177678 + L1MC/D LINE L1 5337 5732 -2145 351 44 0 0 chr4 33110984 33111029 -151177633 + (CA)n Simple_repeat Simple_repeat 2 46 0 611 324 115 28 chr4 33111029 33111199 -151177463 + L1MC/D LINE L1 5732 5886 -1991 212 176 0 20 chr4 33112810 33112861 -151175801 + (CAAAT)n Simple_repeat Simple_repeat 5 54 0 1071 175 34 37 chr4 33112862 33113141 -151175521 - MLT1D LTR MaLR -151 354 40 194 344 75 33 chr4 33113243 33113455 -151175207 + L2 LINE L2 1737 1957 -1357 * 293 315 95 68 chr4 33113423 33113833 -151174829 + L2 LINE L2 2884 3304 -9 246 278 16 48 chr4 33114058 33114184 -151174478 + (CATATA)n Simple_repeat Simple_repeat 5 126 0 3443 209 57 103 chr4 33114914 33115627 -151173035 + Charlie1a DNA MER1_type 5 612 -2149 1988 116 48 17 chr4 33115627 33115920 -151172742 + AluSq SINE Alu 1 302 -11 3443 209 57 103 chr4 33115920 33116727 -151171935 + Charlie1a DNA MER1_type 612 1455 0 210 37 0 0 chr4 33116859 33116886 -151171776 + (CA)n Simple_repeat Simple_repeat 2 28 0 1822 219 71 7 chr4 33118183 33118622 -151170040 + MLT1C LTR MaLR 1 467 0 24 32 0 0 chr4 33119376 33119407 -151169255 + AT_rich Low_complexity Low_complexity 1 31 0 281 341 104 0 chr4 33119803 33119976 -151168686 - MIR SINE MIR -6 256 66 33 43 0 0 chr4 33120177 33120224 -151168438 + AT_rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chr4 33120285 33120314 -151168348 + AT_rich Low_complexity Low_complexity 1 29 0 1752 133 91 26 chr4 33121767 33122119 -151166543 + THE1C LTR MaLR 1 375 0 228 372 8 33 chr4 33122318 33122439 -151166223 + MER5A DNA MER1_type 44 161 -28 2553 55 0 0 chr4 33122879 33123187 -151165475 + AluY SINE Alu 1 308 -3 26 30 0 0 chr4 33123450 33123483 -151165179 + AT_rich Low_complexity Low_complexity 1 33 0 186 43 0 0 chr4 33123817 33123840 -151164822 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 375 328 64 0 chr4 33124295 33124420 -151164242 + MIR SINE MIR 14 146 -116 1631 168 61 85 chr4 33124420 33124832 -151163830 + MLT2C2 LTR ERVL 1 402 -62 330 289 96 13 chr4 33124832 33124988 -151163674 + MIR SINE MIR 94 262 0 245 311 54 0 chr4 33124984 33125058 -151163604 + L2 LINE L2 3227 3304 -9 * 202 275 121 33 chr4 33125297 33125388 -151163274 + MIR SINE MIR 84 182 -80 257 337 12 10 chr4 33127270 33127391 -151161271 + MIR SINE MIR 37 157 -69 309 51 0 0 chr4 33127624 33127663 -151160999 + (TG)n Simple_repeat Simple_repeat 2 40 0 36 23 0 0 chr4 33127796 33127839 -151160823 + AT_rich Low_complexity Low_complexity 1 43 0 290 421 8 21 chr4 33127928 33128168 -151160494 - L2 LINE L2 -654 2660 2424 233 240 136 16 chr4 33128184 33128309 -151160353 + L1MC3 LINE L1 6504 6643 -1142 182 345 12 0 chr4 33128311 33128395 -151160267 - L2 LINE L2 -1039 2275 2191 1210 223 41 34 chr4 33128769 33129094 -151159568 + LTR10C LTR ERV1 243 576 -57 255 281 22 45 chr4 33129242 33129331 -151159331 - L2 LINE L2 0 3313 3227 401 225 36 65 chr4 33129504 33129642 -151159020 + MLT1I LTR MaLR 1 134 -275 319 302 155 8 chr4 33129686 33129815 -151158847 + MLT1I LTR MaLR 223 370 -39 482 207 17 35 chr4 33130815 33130931 -151157731 + MER20 DNA MER1_type 1 114 -105 420 291 15 58 chr4 33131294 33131500 -151157162 - L2 LINE L2 -8 3305 3109 785 282 21 116 chr4 33131786 33132399 -151156263 - L2 LINE L2 -410 2904 2350 21 36 0 0 chr4 33132950 33132978 -151155684 + AT_rich Low_complexity Low_complexity 1 28 0 1686 238 3 8 chr4 33134210 33134567 -151154095 - MLT1A1 LTR MaLR -1 364 10 4725 158 14 54 chr4 33134940 33135248 -151153414 + MER49 LTR ERV1 5 324 -599 2256 109 0 3 chr4 33135248 33135551 -151153111 + AluSq SINE Alu 3 304 -9 4725 158 14 54 chr4 33135551 33136200 -151152462 + MER49 LTR ERV1 324 923 0 607 216 49 31 chr4 33136363 33136525 -151152137 + MER2 DNA MER2_type 181 345 0 199 266 28 119 chr4 33136655 33136798 -151151864 + L2 LINE L2 2652 2781 -533 25 51 0 0 chr4 33137211 33137250 -151151412 + AT_rich Low_complexity Low_complexity 1 39 0 1378 119 0 50 chr4 33138552 33138812 -151149850 + MER61E LTR ERV1 1 247 -322 733 182 42 0 chr4 33138812 33138955 -151149707 + MER61E LTR ERV1 417 565 -4 323 361 47 33 chr4 33138963 33139237 -151149425 - L2 LINE L2 -574 2740 2463 2427 41 0 0 chr4 33139483 33139776 -151148886 - L1PA3 LINE L1 -3 6152 5860 402 244 71 31 chr4 33140524 33140651 -151148011 - L2 LINE L2 0 3313 3182 2106 140 0 0 chr4 33140676 33140976 -151147686 + AluSx SINE Alu 2 301 -11 191 340 10 50 chr4 33142872 33142972 -151145690 - L2 LINE L2 -43 3229 3134 2109 118 0 3 chr4 33143047 33143351 -151145311 - AluSg SINE Alu -6 304 2 339 321 29 0 chr4 33143828 33143965 -151144697 + GA-rich Low_complexity Low_complexity 5 145 0 736 172 0 15 chr4 33144049 33144183 -151144479 + FLAM_C SINE Alu 2 133 0 48 53 0 0 chr4 33144403 33144479 -151144183 + AT_rich Low_complexity Low_complexity 1 76 0 963 179 0 68 chr4 33144695 33144930 -151143732 - MER20 DNA MER1_type 0 219 1 322 330 89 51 chr4 33146670 33146906 -151141756 - L3 LINE CR1 -363 1214 970 30 0 0 0 chr4 33147026 33147056 -151141606 + AT_rich Low_complexity Low_complexity 1 30 0 458 264 105 68 chr4 33147315 33147668 -151140994 - MLT1K LTR MaLR -17 571 206 898 194 12 0 chr4 33147942 33148112 -151140550 + MSTC LTR MaLR 253 424 -4 450 353 42 6 chr4 33148117 33148284 -151140378 - MER5B DNA MER1_type 0 178 6 962 233 34 0 chr4 33148528 33148734 -151139928 + MLT1A1 LTR MaLR 115 327 -38 214 374 10 0 chr4 33150200 33150299 -151138363 - L2 LINE L2 -559 2755 2656 27 73 0 0 chr4 33150369 33150424 -151138238 + AT_rich Low_complexity Low_complexity 1 55 0 31 26 0 0 chr4 33150521 33150559 -151138103 + AT_rich Low_complexity Low_complexity 1 38 0 1116 96 6 6 chr4 33151199 33151355 -151137307 + AluSg SINE Alu 1 156 -154 1674 202 19 46 chr4 33151478 33151845 -151136817 - MER67D LTR ERV1 -157 357 1 329 277 31 23 chr4 33151884 33152014 -151136648 + L1 LINE L1 3651 3781 -2365 266 259 17 0 chr4 33152134 33152192 -151136470 - MIR SINE MIR -155 107 49 324 0 0 0 chr4 33152387 33152423 -151136239 + (TG)n Simple_repeat Simple_repeat 2 37 0 392 322 59 0 chr4 33152524 33152676 -151135986 + L3 LINE CR1 1261 1421 -156 481 245 54 38 chr4 33153203 33153387 -151135275 - LTR33 LTR ERVL 0 521 335 234 172 207 0 chr4 33153489 33153576 -151135086 - MER53 DNA DNA -82 107 3 472 225 87 11 chr4 33153615 33153833 -151134829 - MER5C DNA MER1_type -37 287 4 258 198 83 42 chr4 33153893 33153989 -151134673 - LTR33 LTR ERVL -306 215 116 248 383 21 28 chr4 33154988 33155129 -151133533 - MER5A DNA MER1_type -1 188 49 2018 107 31 17 chr4 33155488 33155778 -151132884 - AluSg SINE Alu -16 294 1 328 318 81 31 chr4 33156582 33156805 -151131857 + MIR SINE MIR 1 234 -28 3472 210 8 47 chr4 33157451 33158372 -151130290 - L1 LINE L1 -1169 4977 4093 * 4440 193 15 20 chr4 33158369 33159590 -151129072 + L1PB4 LINE L1 4939 6156 0 224 167 21 0 chr4 33160386 33160434 -151128228 + (TAAG)n Simple_repeat Simple_repeat 3 51 0 335 315 161 7 chr4 33160909 33161058 -151127604 - L2 LINE L2 -762 2552 2381 515 327 43 43 chr4 33161121 33161448 -151127214 - L2 LINE L2 -1151 2163 1837 1142 321 97 54 chr4 33161998 33162952 -151125710 + L2 LINE L2 319 1336 -1978 3132 108 18 0 chr4 33162952 33163397 -151125265 - MLT2A2 LTR ERVL 0 453 1 1142 321 97 54 chr4 33163397 33163655 -151125007 + L2 LINE L2 1336 1582 -1732 442 360 222 21 chr4 33164231 33165164 -151123498 + L2 LINE L2 1855 2974 -340 500 344 45 29 chr4 33165233 33165611 -151123051 - L1MEc LINE L1 -5974 422 39 255 152 0 0 chr4 33166138 33166184 -151122478 + (TG)n Simple_repeat Simple_repeat 2 47 0 2064 115 44 0 chr4 33167287 33167583 -151121079 + AluSx SINE Alu 1 309 -3 551 333 76 55 chr4 33169160 33169847 -151118815 - L1 LINE L1 -2961 3185 2485 369 322 148 22 chr4 33169908 33170178 -151118484 - L2 LINE L2 -469 2845 2542 22 0 0 0 chr4 33170768 33170790 -151117872 + AT_rich Low_complexity Low_complexity 1 22 0 259 244 67 104 chr4 33170810 33170974 -151117688 - MIR SINE MIR 0 262 105 537 58 0 0 chr4 33171064 33171133 -151117529 + (TTCC)n Simple_repeat Simple_repeat 2 70 0 566 201 151 25 chr4 33171133 33171292 -151117370 - AluJb SINE Alu -29 283 105 299 155 17 0 chr4 33171381 33171439 -151117223 + AluJb SINE Alu 69 127 -175 333 214 0 2 chr4 33171451 33171515 -151117147 - AluS SINE Alu -250 58 2 21 0 0 0 chr4 33171601 33171622 -151117040 + AT_rich Low_complexity Low_complexity 1 21 0 1037 318 46 51 chr4 33171973 33172664 -151115998 - HERVL LTR ERVL -1042 3954 3335 260 246 15 0 chr4 33172880 33172945 -151115717 - MLT1E2 LTR MaLR -2 624 559 409 135 0 0 chr4 33172951 33173025 -151115637 - L1MA4A LINE L1 -4 6299 6226 321 238 8 127 chr4 33173196 33173322 -151115340 - MLT1D-int LTR MaLR -710 661 551 467 99 0 0 chr4 33173322 33173393 -151115269 - Alu SINE Alu 0 311 241 1824 288 5 14 chr4 33173393 33173719 -151114943 - MLT1D-int LTR MaLR -817 554 234 1172 207 94 22 chr4 33173719 33174038 -151114624 + MER2 DNA MER2_type 3 344 0 1824 288 5 14 chr4 33174038 33174270 -151114392 - MLT1D-int LTR MaLR -1137 234 1 1282 267 50 40 chr4 33174275 33174770 -151113892 - MLT1D LTR MaLR -4 501 2 821 148 5 0 chr4 33174874 33175015 -151113647 + THE1C LTR MaLR 242 375 0 * 1807 197 3 22 chr4 33175015 33175370 -151113292 + MLT1B LTR MaLR 43 390 0 2329 101 0 3 chr4 33175594 33175901 -151112761 + AluSg SINE Alu 1 306 -4 180 0 0 0 chr4 33175902 33175922 -151112740 + (TA)n Simple_repeat Simple_repeat 1 20 0 25 0 0 0 chr4 33177205 33177230 -151111432 + AT_rich Low_complexity Low_complexity 1 25 0 1868 312 82 54 chr4 33178561 33179532 -151109130 - L2 LINE L2 -339 2975 1977 1140 194 237 48 chr4 33179546 33179695 -151108967 + L1MC3 LINE L1 7307 7427 -358 1894 121 4 0 chr4 33179695 33179960 -151108702 + AluSx SINE Alu 1 266 -46 1140 194 237 48 chr4 33179960 33180038 -151108624 + L1MC3 LINE L1 7427 7489 -296 1992 66 52 22 chr4 33180038 33180342 -151108320 + AluY SINE Alu 1 312 0 1140 194 237 48 chr4 33180342 33180509 -151108153 + L1MC3 LINE L1 7489 7778 -7 228 321 54 12 chr4 33180776 33180944 -151107718 - MLT1I LTR MaLR -35 374 200 2309 148 46 19 chr4 33181148 33181560 -151107102 + MSTA LTR MaLR 4 426 -2 337 294 72 7 chr4 33181974 33182127 -151106535 + L1M4c LINE L1 848 1010 -5374 313 271 24 0 chr4 33182145 33182230 -151106432 - L1MEd LINE L1 -5107 1012 926 533 287 54 40 chr4 33182330 33182626 -151106036 + L1ME3A LINE L1 5866 6165 -5 1656 209 3 0 chr4 33182825 33183182 -151105480 - AluJo SINE Alu 0 360 3 397 285 82 37 chr4 33183209 33183745 -151104917 - L1ME LINE L1 -4880 1335 785 458 363 15 15 chr4 33184204 33184477 -151104185 - L1ME LINE L1 -6011 385 113 201 108 0 0 chr4 33184778 33184815 -151103847 + (ATG)n Simple_repeat Simple_repeat 3 39 0 323 333 97 28 chr4 33184847 33184991 -151103671 - MIR SINE MIR -49 213 60 2231 69 0 10 chr4 33185259 33185547 -151103115 + AluY SINE Alu 13 297 -14 23 0 0 0 chr4 33185563 33185586 -151103076 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr4 33186795 33186832 -151101830 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr4 33187023 33187058 -151101604 + AT_rich Low_complexity Low_complexity 1 35 0 196 299 104 0 chr4 33187209 33187276 -151101386 + L3 LINE CR1 390 463 -1114 3522 152 67 57 chr4 33187672 33188449 -151100213 - LTR1 LTR ERV1 0 785 1 794 126 5 126 chr4 33189161 33189368 -151099294 + MER53 DNA DNA 8 189 0 406 301 26 20 chr4 33189370 33189523 -151099139 - MIR SINE MIR -47 215 62 423 78 0 0 chr4 33189722 33189786 -151098876 - Alu SINE Alu 0 311 245 1080 45 0 15 chr4 33189790 33189924 -151098738 - AluY SINE Alu -179 132 1 206 345 71 24 chr4 33189964 33190132 -151098530 + L2 LINE L2 2691 2866 -448 2425 212 16 43 chr4 33190340 33190987 -151097675 - L1MA8 LINE L1 -870 5276 4648 4606 159 19 21 chr4 33191001 33191190 -151097472 + L1MA8 LINE L1 5254 5442 -849 1939 149 0 0 chr4 33191190 33191466 -151097196 + AluSx SINE Alu 1 276 -36 306 0 0 0 chr4 33191473 33191507 -151097155 + (CA)n Simple_repeat Simple_repeat 2 35 0 4606 159 19 21 chr4 33191507 33192166 -151096496 + L1MA8 LINE L1 5448 6108 -183 * 14315 92 6 1 chr4 33192164 33194107 -151094555 + L1PA5 LINE L1 55 2008 -4138 7575 89 6 21 chr4 33194109 33195196 -151093466 - MER11C LTR ERVK 0 1071 1 21307 56 0 1 chr4 33195196 33198726 -151089936 + L1PA5 LINE L1 2599 6148 -6 621 136 131 28 chr4 33198726 33198902 -151089760 + L1MA7 LINE L1 6092 6285 -6 27 49 0 0 chr4 33199482 33199523 -151089139 + AT_rich Low_complexity Low_complexity 1 41 0 187 182 0 36 chr4 33199789 33199844 -151088818 + CT-rich Low_complexity Low_complexity 2 54 0 2233 108 0 3 chr4 33199949 33200246 -151088416 - AluSx SINE Alu -16 296 1 32 43 0 0 chr4 33200529 33200575 -151088087 + AT_rich Low_complexity Low_complexity 1 46 0 225 378 18 9 chr4 33200765 33200876 -151087786 - MIR3 SINE MIR -46 162 51 254 260 0 0 chr4 33201085 33201135 -151087527 + MER21B LTR ERV1 47 96 -767 2038 122 0 38 chr4 33201164 33201484 -151087178 - AluSx SINE Alu -4 308 1 917 294 76 35 chr4 33201498 33202077 -151086585 + MER21B LTR ERV1 100 756 -107 1875 152 25 0 chr4 33202115 33202391 -151086271 + AluSx SINE Alu 1 283 -29 285 29 0 0 chr4 33202391 33202425 -151086237 + (CA)n Simple_repeat Simple_repeat 2 35 0 445 250 18 36 chr4 33202502 33202670 -151085992 + (TA)n Simple_repeat Simple_repeat 2 166 0 419 200 0 0 chr4 33202704 33202794 -151085868 + MER53 DNA DNA 100 189 0 262 343 65 57 chr4 33203557 33203656 -151085006 - MIR SINE MIR -7 255 158 1429 195 29 49 chr4 33203656 33204000 -151084662 - MER1B DNA MER1_type 0 337 1 262 343 65 57 chr4 33204000 33204148 -151084514 - MIR SINE MIR -104 158 6 26 50 0 0 chr4 33204478 33204518 -151084144 + AT_rich Low_complexity Low_complexity 1 40 0 256 236 34 45 chr4 33204764 33204853 -151083809 - MIR SINE MIR 0 262 175 569 279 20 0 chr4 33205702 33205849 -151082813 + MER4A-int LTR ERV1 1951 2100 -4231 610 229 45 76 chr4 33205863 33206285 -151082377 + MER4A-int LTR ERV1 1356 3129 -263 2088 169 84 22 chr4 33206638 33206822 -151081840 - MSTA LTR MaLR 0 428 257 2524 111 3 31 chr4 33206822 33207043 -151081619 - THE1C LTR MaLR 0 375 168 2202 113 3 0 chr4 33207043 33207336 -151081326 + AluSg SINE Alu 1 294 -16 2524 111 3 31 chr4 33207336 33207500 -151081162 - THE1C LTR MaLR -207 168 1 2088 169 84 22 chr4 33207500 33207718 -151080944 - MSTA LTR MaLR -171 257 1 1366 209 77 93 chr4 33207722 33208773 -151079889 + MER4A-int LTR ERV1 2099 3620 -1395 2337 212 42 14 chr4 33208783 33209246 -151079416 + L1 LINE L1 4682 5130 -1036 1890 112 11 0 chr4 33209246 33209515 -151079147 + AluY SINE Alu 37 308 -3 2337 212 42 14 chr4 33209515 33209766 -151078896 + L1 LINE L1 5130 5419 -747 4066 143 26 0 chr4 33209766 33210429 -151078233 + L1PA16 LINE L1 5487 6166 0 310 255 11 0 chr4 33210436 33210530 -151078132 + (TA)n Simple_repeat Simple_repeat 1 95 0 7542 165 22 1 chr4 33210624 33211951 -151076711 - Tigger1 DNA MER2_type -4 2414 1060 4978 193 28 16 chr4 33211954 33213981 -151074681 - L1MA4A LINE L1 0 7365 5316 5755 226 28 48 chr4 33214082 33215940 -151072722 - L1MA4A LINE L1 -2214 4994 3176 369 0 0 0 chr4 33215971 33216012 -151072650 + (TC)n Simple_repeat Simple_repeat 2 42 0 * 372 103 0 0 chr4 33216011 33216069 -151072593 + (TA)n Simple_repeat Simple_repeat 1 58 0 4725 207 35 176 chr4 33216069 33218442 -151070220 - L1MA4A LINE L1 -4809 2400 1 552 104 198 0 chr4 33218448 33218554 -151070108 - Tigger1 DNA MER2_type -1344 1074 948 * 4378 165 34 8 chr4 33218548 33219316 -151069346 - Tigger1 DNA MER2_type -1630 788 1 5595 219 48 43 chr4 33219319 33221052 -151067610 + MER4A-int LTR ERV1 4589 6330 -1 1880 113 9 48 chr4 33221141 33221476 -151067186 + MER4A LTR ERV1 37 358 -306 2145 126 3 3 chr4 33221513 33221823 -151066839 + MER4A LTR ERV1 355 664 0 546 168 0 37 chr4 33221827 33221934 -151066728 + LTR49 LTR ERV1 39 141 -454 452 143 26 13 chr4 33221957 33222030 -151066632 + MER84 LTR ERVI 1 74 -433 1773 146 71 7 chr4 33222030 33222339 -151066323 + MER84 LTR ERVI 2 330 -177 187 151 0 57 chr4 33223921 33223974 -151064688 + GA-rich Low_complexity Low_complexity 5 54 0 180 0 0 0 chr4 33224211 33224231 -151064431 + (TAA)n Simple_repeat Simple_repeat 1 20 0 1060 224 35 52 chr4 33224717 33225061 -151063601 + MER58B DNA MER1_type 1 338 -3 309 381 12 6 chr4 33225098 33225266 -151063396 + L2 LINE L2 2619 2787 -527 480 35 0 0 chr4 33225394 33225452 -151063210 + (A)n Simple_repeat Simple_repeat 1 58 0 180 0 0 0 chr4 33225868 33225888 -151062774 + (TAA)n Simple_repeat Simple_repeat 1 20 0 1060 224 35 52 chr4 33226374 33226718 -151061944 + MER58B DNA MER1_type 1 338 -3 309 381 12 6 chr4 33226755 33226923 -151061739 + L2 LINE L2 2619 2787 -527 318 106 0 0 chr4 33227051 33227098 -151061564 + (A)n Simple_repeat Simple_repeat 1 47 0 216 331 153 25 chr4 33227431 33227588 -151061074 - L2 LINE L2 -189 3083 2907 452 215 90 123 chr4 33227603 33227839 -151060823 - LTR48 LTR ERV1 -30 757 515 1825 143 42 68 chr4 33227839 33228224 -151060438 - THE1C LTR MaLR 0 375 1 452 215 90 123 chr4 33228224 33228415 -151060247 - LTR48 LTR ERV1 -272 515 157 766 167 71 54 chr4 33228423 33228591 -151060071 - MER84 LTR ERVI -9 498 328 296 95 0 0 chr4 33228608 33228650 -151060012 + MADE1 DNA Mariner 1 42 -38 271 358 142 4 chr4 33229013 33229273 -151059389 + L2 LINE L2 2420 2715 -599 1357 67 0 0 chr4 33229280 33229460 -151059202 + L1PA13 LINE L1 5984 6163 0 198 292 0 15 chr4 33229940 33230005 -151058657 + L2 LINE L2 3248 3311 -2 267 243 0 72 chr4 33231642 33231753 -151056909 + HAL1 LINE L1 95 197 -2310 460 336 141 46 chr4 33231883 33232315 -151056347 + HAL1 LINE L1 446 918 -1589 277 258 90 69 chr4 33232362 33232503 -151056159 + HAL1 LINE L1 897 1034 -1473 1785 160 0 55 chr4 33232503 33232806 -151055856 + AluSx SINE Alu 1 286 -26 390 21 0 0 chr4 33232806 33232853 -151055809 + (CATA)n Simple_repeat Simple_repeat 2 48 0 1785 160 0 55 chr4 33232853 33232874 -151055788 + AluSx SINE Alu 286 307 -5 277 258 90 69 chr4 33232874 33233212 -151055450 + HAL1 LINE L1 1034 1386 -1121 416 320 56 32 chr4 33233365 33233615 -151055047 + HAL1 LINE L1 1627 1882 -625 2548 171 18 134 chr4 33233675 33234326 -151054336 - MER70B LTR ERVL -2 576 1 546 298 0 7 chr4 33234427 33234568 -151054094 - MIR SINE MIR -105 157 18 257 279 81 35 chr4 33234565 33234717 -151053945 + MIR SINE MIR 5 161 -68 * 330 331 100 25 chr4 33237631 33237791 -151050871 + MIR SINE MIR 2 173 -89 237 316 86 0 chr4 33237912 33238029 -151050633 - MIR SINE MIR -79 183 57 2265 128 0 0 chr4 33238416 33238729 -151049933 - AluSq SINE Alu 0 313 1 30 45 0 0 chr4 33239197 33239241 -151049421 + AT_rich Low_complexity Low_complexity 1 44 0 191 36 36 0 chr4 33239798 33239826 -151048836 + (CA)n Simple_repeat Simple_repeat 2 30 0 473 111 0 0 chr4 33240107 33240179 -151048483 + AluS SINE Alu 1 72 -239 1962 114 72 7 chr4 33240179 33240486 -151048176 - L1PA11 LINE L1 -101 6073 5747 249 181 0 133 chr4 33240456 33240539 -151048123 - L1P LINE L1 -2887 3259 3188 * 5681 120 15 2 chr4 33240560 33241435 -151047227 - L1PB1 LINE L1 -1 6150 5265 * 8517 184 31 26 chr4 33241418 33242766 -151045896 - L1P LINE L1 -2950 3196 1835 1884 154 4 0 chr4 33242766 33243075 -151045587 + AluSx SINE Alu 1 310 0 8517 184 31 26 chr4 33243075 33243623 -151045039 - L1P LINE L1 -4311 1835 1291 1547 288 91 90 chr4 33243709 33244723 -151043939 + L2 LINE L2 2013 3004 -268 864 287 184 29 chr4 33244788 33245234 -151043428 + LTR41 LTR ERVL 29 543 -230 26 0 0 0 chr4 33245334 33245360 -151043302 + AT_rich Low_complexity Low_complexity 1 26 0 24 67 0 0 chr4 33245648 33245693 -151042969 + AT_rich Low_complexity Low_complexity 1 45 0 189 0 0 0 chr4 33245869 33245890 -151042772 + (T)n Simple_repeat Simple_repeat 1 21 0 1746 217 8 2 chr4 33246801 33247218 -151041444 + MLT2B1 LTR ERVL 1 470 -50 328 64 0 0 chr4 33247218 33247265 -151041397 + MADE1 DNA Mariner 1 47 -33 331 161 0 0 chr4 33247301 33247357 -151041305 + MLT2B1 LTR ERVL 460 515 0 235 100 0 0 chr4 33247873 33247913 -151040749 + L1MA3 LINE L1 6266 6305 0 23 0 0 0 chr4 33247914 33247937 -151040725 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 33248061 33248082 -151040580 + AT_rich Low_complexity Low_complexity 1 21 0 223 415 67 12 chr4 33249092 33249256 -151039406 - MIR SINE MIR -70 192 20 338 295 45 27 chr4 33249636 33249748 -151038914 - MIR SINE MIR -60 148 35 253 408 44 64 chr4 33250759 33251166 -151037496 - L2 LINE L2 -7 3265 2867 729 245 42 0 chr4 33251315 33251527 -151037135 - MER33 DNA MER1_type -102 222 2 53 90 0 0 chr4 33251668 33251812 -151036850 + AT_rich Low_complexity Low_complexity 1 144 0 4373 185 32 56 chr4 33252126 33253603 -151035059 + L1MA9 LINE L1 4280 5694 -618 1772 98 0 23 chr4 33253603 33253868 -151034794 + AluY SINE Alu 19 277 -34 4373 185 32 56 chr4 33253868 33254473 -151034189 + L1MA9 LINE L1 5694 6312 0 267 225 0 0 chr4 33254520 33254591 -151034071 + (TA)n Simple_repeat Simple_repeat 1 71 0 2181 97 0 17 chr4 33254591 33254891 -151033771 - AluSx SINE Alu -17 295 1 25 51 0 0 chr4 33254892 33254931 -151033731 + AT_rich Low_complexity Low_complexity 1 39 0 850 178 17 56 chr4 33255569 33255749 -151032913 - FRAM SINE Alu -4 172 1 202 368 16 40 chr4 33255754 33255879 -151032783 - MIR SINE MIR -121 141 20 21 0 0 0 chr4 33255930 33255951 -151032711 + AT_rich Low_complexity Low_complexity 1 21 0 206 244 44 33 chr4 33255990 33256080 -151032582 - L2 LINE L2 -790 2524 2434 229 343 56 85 chr4 33256615 33256956 -151031706 + MLT1L LTR MaLR 24 354 -195 189 107 0 0 chr4 33257201 33257229 -151031433 + (GA)n Simple_repeat Simple_repeat 2 29 0 447 19 0 0 chr4 33257233 33257285 -151031377 + (TG)n Simple_repeat Simple_repeat 1 52 0 592 345 110 19 chr4 33258214 33258769 -151029893 - L2 LINE L2 -34 3279 2671 2110 149 13 13 chr4 33258771 33259146 -151029516 + THE1C LTR MaLR 1 375 0 8249 137 16 36 chr4 33259146 33260523 -151028139 + THE1C-int LTR MaLR 1 1349 -231 278 65 0 22 chr4 33260667 33260713 -151027949 + (GGGAGA)n Simple_repeat Simple_repeat 6 50 0 400 351 63 19 chr4 33260774 33260979 -151027683 - MIR SINE MIR -2 260 47 205 289 118 67 chr4 33261075 33261210 -151027452 - MIR3 SINE MIR -24 184 43 21 57 0 0 chr4 33262323 33262358 -151026304 + AT_rich Low_complexity Low_complexity 1 35 0 234 81 0 0 chr4 33262833 33262870 -151025792 + (T)n Simple_repeat Simple_repeat 1 37 0 1975 80 8 4 chr4 33262920 33263184 -151025478 + AluSp SINE Alu 39 303 -10 191 315 0 0 chr4 33263212 33263266 -151025396 + L2 LINE L2 3259 3312 -1 716 314 73 16 chr4 33264044 33264485 -151024177 - MLT1G1 LTR MaLR -36 559 75 315 283 89 50 chr4 33264528 33264708 -151023954 + MLT1L LTR MaLR 357 543 -72 819 259 21 43 chr4 33264753 33265035 -151023627 - MER93b LTR ERV1 0 373 98 389 20 0 20 chr4 33265835 33265886 -151022776 + (TTCC)n Simple_repeat Simple_repeat 2 51 0 207 186 0 0 chr4 33265889 33265932 -151022730 + CT-rich Low_complexity Low_complexity 1 43 0 208 111 44 0 chr4 33266671 33266716 -151021946 + CT-rich Low_complexity Low_complexity 1 47 0 256 283 40 10 chr4 33266768 33266867 -151021795 + MIR3 SINE MIR 85 186 -22 355 294 123 0 chr4 33268852 33268998 -151019664 + MIR SINE MIR 20 183 -79 554 253 152 17 chr4 33269309 33269546 -151019116 + MER5C DNA MER1_type 56 324 0 7674 25 0 0 chr4 33269993 33271058 -151017604 + L1PA3 LINE L1 5095 6155 0 1503 292 88 59 chr4 33271497 33272631 -151016031 + L2 LINE L2 2046 3297 -16 28 0 0 0 chr4 33273109 33273137 -151015525 + AT_rich Low_complexity Low_complexity 1 28 0 275 296 163 0 chr4 33273593 33273691 -151014971 - MIR SINE MIR -75 187 74 1780 156 21 12 chr4 33273967 33274306 -151014356 - L1MA3 LINE L1 0 6305 5964 451 243 85 32 chr4 33274353 33274422 -151014240 - L1ME3A LINE L1 -230 5940 5876 2535 67 6 0 chr4 33274422 33274753 -151013909 + L1PA7 LINE L1 5819 6151 -3 451 243 85 32 chr4 33274753 33274930 -151013732 - L1ME3A LINE L1 -294 5876 5681 22 80 0 0 chr4 33276093 33276143 -151012519 + AT_rich Low_complexity Low_complexity 1 50 0 1812 213 178 0 chr4 33276445 33276872 -151011790 + MLT1D LTR MaLR 1 503 -2 277 266 63 38 chr4 33276876 33276955 -151011707 - L2 LINE L2 -33 3280 3200 215 283 222 33 chr4 33276936 33277116 -151011546 - MIR SINE MIR -32 230 17 * 23 68 0 0 chr4 33277318 33277362 -151011300 + AT_rich Low_complexity Low_complexity 1 44 0 2407 59 0 7 chr4 33278085 33278390 -151010272 - AluY SINE Alu -8 303 1 761 130 0 0 chr4 33278423 33278538 -151010124 - L1PB3 LINE L1 0 6154 6040 23 86 0 0 chr4 33278936 33278994 -151009668 + AT_rich Low_complexity Low_complexity 1 58 0 522 81 23 0 chr4 33279300 33279386 -151009276 + L1PB1 LINE L1 6059 6146 -5 986 167 39 56 chr4 33279417 33279538 -151009124 + MSTA LTR MaLR 67 184 -244 1799 175 0 28 chr4 33279538 33279858 -151008804 + AluJb SINE Alu 1 311 -1 986 167 39 56 chr4 33279858 33279969 -151008693 + MSTA LTR MaLR 184 295 -133 1934 126 7 0 chr4 33280494 33280792 -151007870 - AluSx SINE Alu 0 303 4 225 164 55 18 chr4 33281411 33281466 -151007196 - MER82 DNA MER2_type -430 223 167 201 74 0 0 chr4 33281891 33281918 -151006744 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 882 221 10 36 chr4 33283511 33283706 -151004956 - AluJb SINE Alu -20 292 103 206 310 0 0 chr4 33284260 33284318 -151004344 + A-rich Low_complexity Low_complexity 2 59 0 186 246 246 0 chr4 33284591 33284652 -151004010 + L2 LINE L2 1052 1127 -2187 257 339 58 58 chr4 33284789 33285046 -151003616 + L2 LINE L2 1390 1646 -1668 716 109 36 7 chr4 33285046 33285184 -151003478 + CT-rich Low_complexity Low_complexity 4 145 0 1419 182 54 20 chr4 33285186 33285482 -151003180 - AluJo SINE Alu -6 306 1 257 307 9 26 chr4 33285494 33285608 -151003054 + L2 LINE L2 1611 1722 -1592 809 268 31 65 chr4 33285722 33286199 -151002463 + L1MEc LINE L1 1258 1718 -4678 244 289 139 12 chr4 33286222 33286395 -151002267 - L1MEc LINE L1 -5145 1977 1783 242 236 0 14 chr4 33286402 33286474 -151002188 + (TA)n Simple_repeat Simple_repeat 2 72 0 234 297 110 13 chr4 33286497 33286652 -151002010 - L1MEc LINE L1 -4887 1536 1367 582 294 53 60 chr4 33287009 33287444 -151001218 - L1MEc LINE L1 -5972 451 20 21 0 0 0 chr4 33288166 33288187 -151000475 + AT_rich Low_complexity Low_complexity 1 21 0 199 373 25 54 chr4 33290724 33290928 -150997734 + L2 LINE L2 2259 2456 -858 755 239 48 43 chr4 33290929 33291138 -150997524 - MER63A DNA MER1_type 0 210 1 210 128 85 0 chr4 33291399 33291446 -150997216 + (TTATA)n Simple_repeat Simple_repeat 1 51 0 21 0 0 0 chr4 33291790 33291811 -150996851 + AT_rich Low_complexity Low_complexity 1 21 0 458 309 58 39 chr4 33292340 33292547 -150996115 - MIR SINE MIR -41 221 11 202 89 67 0 chr4 33293402 33293447 -150995215 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 207 0 0 0 chr4 33294988 33295011 -150993651 + (CA)n Simple_repeat Simple_repeat 2 24 0 25 51 0 0 chr4 33295592 33295631 -150993031 + AT_rich Low_complexity Low_complexity 1 39 0 4119 199 35 0 chr4 33295714 33296574 -150992088 - L1MC1 LINE L1 0 6333 5444 1472 205 16 70 chr4 33297053 33297439 -150991223 + MLT1A1 LTR MaLR 1 365 0 25 0 0 0 chr4 33297630 33297655 -150991007 + AT_rich Low_complexity Low_complexity 1 25 0 24 53 0 0 chr4 33298015 33298053 -150990609 + AT_rich Low_complexity Low_complexity 1 38 0 242 154 0 31 chr4 33298324 33298389 -150990273 + (AATAG)n Simple_repeat Simple_repeat 4 66 0 704 296 62 101 chr4 33298472 33298673 -150989989 - LTR16A LTR ERVL -4 446 239 1923 160 10 44 chr4 33298673 33299061 -150989601 - THE1C LTR MaLR 0 375 1 704 296 62 101 chr4 33299061 33299295 -150989367 - LTR16A LTR ERVL -211 239 28 527 207 53 147 chr4 33299364 33299794 -150988868 + MLT1B LTR MaLR 1 390 0 24 0 0 0 chr4 33299945 33299969 -150988693 + AT_rich Low_complexity Low_complexity 1 24 0 279 294 12 0 chr4 33300224 33300309 -150988353 + GA-rich Low_complexity Low_complexity 2 87 0 494 312 0 0 chr4 33301773 33301898 -150986764 + L2 LINE L2 3187 3311 -2 2152 107 3 0 chr4 33301942 33302233 -150986429 + AluSp SINE Alu 7 298 -15 224 306 0 0 chr4 33303278 33303350 -150985312 + A-rich Low_complexity Low_complexity 1 72 0 21 0 0 0 chr4 33303574 33303595 -150985067 + AT_rich Low_complexity Low_complexity 1 21 0 247 352 61 36 chr4 33304257 33304453 -150984209 + L2 LINE L2 2921 3121 -192 1514 168 8 19 chr4 33304743 33305005 -150983657 + AluJo SINE Alu 36 294 -18 329 217 26 43 chr4 33305055 33305170 -150983492 - ORSL DNA AcHobo -160 115 3 205 375 55 16 chr4 33306467 33306595 -150982067 + MIR SINE MIR 57 189 -73 2166 99 20 0 chr4 33307100 33307392 -150981270 + AluSq SINE Alu 1 298 -15 460 216 9 35 chr4 33307926 33308042 -150980620 - L2 LINE L2 -18 3295 3183 248 65 0 0 chr4 33308743 33308774 -150979888 - MLT2B1 LTR ERVL -4 410 380 432 0 0 0 chr4 33308776 33308824 -150979838 + (TG)n Simple_repeat Simple_repeat 2 49 0 1327 220 39 65 chr4 33308886 33309299 -150979363 - MLT2B1 LTR ERVL -116 404 3 202 135 27 0 chr4 33309524 33309561 -150979101 + CT-rich Low_complexity Low_complexity 4 41 0 625 65 0 0 chr4 33310214 33310306 -150978356 + Alu SINE Alu 221 312 0 207 343 0 0 chr4 33310364 33310434 -150978228 + L2 LINE L2 3203 3272 0 2143 110 0 0 chr4 33310475 33310765 -150977897 - AluSq SINE Alu -18 295 6 322 353 0 30 chr4 33313015 33313148 -150975514 - MIR SINE MIR -114 148 20 1958 183 17 6 chr4 33313708 33314069 -150974593 + MLT1A1 LTR MaLR 1 365 0 194 322 22 44 chr4 33314223 33314313 -150974349 - L2 LINE L2 -48 3265 3178 705 256 0 0 chr4 33314486 33314642 -150974020 + FRAM SINE Alu 1 156 -10 273 341 209 5 chr4 33314912 33315123 -150973539 + MLT1G1 LTR MaLR 1 254 -341 587 211 91 15 chr4 33315238 33315429 -150973233 + MLT1G1 LTR MaLR 303 595 0 222 105 0 0 chr4 33315552 33315590 -150973072 + (CA)n Simple_repeat Simple_repeat 2 39 0 21 36 0 0 chr4 33315788 33315816 -150972846 + AT_rich Low_complexity Low_complexity 1 28 0 4307 170 22 34 chr4 33315822 33317250 -150971412 - L1MA7 LINE L1 -13 6278 4777 5254 199 38 3 chr4 33318200 33319394 -150969268 - L1MC1 LINE L1 0 6333 5101 439 296 37 46 chr4 33319538 33319754 -150968908 - MIR SINE MIR -1 261 48 24 67 0 0 chr4 33320843 33320888 -150967774 + AT_rich Low_complexity Low_complexity 1 45 0 954 127 34 19 chr4 33320998 33321203 -150967459 - L1MA7 LINE L1 0 6291 6084 25 75 0 0 chr4 33321904 33321957 -150966705 + AT_rich Low_complexity Low_complexity 1 53 0 6612 99 8 5 chr4 33322017 33324959 -150963703 + L1PA8 LINE L1 3177 6172 0 502 171 12 92 chr4 33325062 33325226 -150963436 + L1MA1 LINE L1 6048 6198 -104 27 0 0 0 chr4 33325290 33325317 -150963345 + AT_rich Low_complexity Low_complexity 1 27 0 2008 143 29 35 chr4 33325791 33326168 -150962494 + THE1C LTR MaLR 1 375 0 5256 160 56 7 chr4 33326196 33327089 -150961573 + THE1C-int LTR MaLR 17 953 -627 7335 175 9 39 chr4 33327093 33328493 -150960169 - MSTA-int LTR MaLR -220 1360 3 1460 196 139 18 chr4 33328495 33328877 -150959785 - MSTA LTR MaLR 0 428 1 399 153 14 0 chr4 33328877 33328949 -150959713 + L1PA15 LINE L1 6086 6158 -7 699 251 22 56 chr4 33328963 33329302 -150959360 + L1ME2 LINE L1 5255 5609 -553 1271 192 36 126 chr4 33329302 33329584 -150959078 - MER39 LTR ERV1 0 707 401 2138 115 0 0 chr4 33329584 33329871 -150958791 - AluSq SINE Alu -26 287 1 1271 192 36 126 chr4 33329871 33330159 -150958503 - MER39 LTR ERV1 -306 401 1 1205 279 41 24 chr4 33330163 33330697 -150957965 + L1ME2 LINE L1 5611 6153 -11 633 319 114 44 chr4 33331365 33331776 -150956886 + L2 LINE L2 2874 3313 0 1915 109 138 3 chr4 33331858 33332178 -150956484 - THE1B LTR MaLR 0 364 2 223 378 79 6 chr4 33332348 33332512 -150956150 - MIR SINE MIR -7 255 80 514 295 14 0 chr4 33332541 33332680 -150955982 + MER63A DNA MER1_type 42 182 -28 2793 250 50 37 chr4 33335121 33335907 -150952755 + L1MC3 LINE L1 3919 4119 -2027 2419 135 5 11 chr4 33335907 33336284 -150952378 - THE1C LTR MaLR 0 375 1 2793 250 50 37 chr4 33336284 33337586 -150951076 + L1MC3 LINE L1 4119 5403 -743 3855 211 77 43 chr4 33337589 33338545 -150950117 + L1MC3 LINE L1 6620 7622 -163 1967 131 3 0 chr4 33338545 33338835 -150949827 + AluSq SINE Alu 2 292 -21 3855 211 77 43 chr4 33338835 33339005 -150949657 + L1MC3 LINE L1 7622 7785 0 926 116 11 28 chr4 33339141 33339322 -150949340 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 1709 190 0 7 chr4 33339328 33339628 -150949034 - AluJb SINE Alu -2 310 13 348 299 0 28 chr4 33339687 33339794 -150948868 + GA-rich Low_complexity Low_complexity 1 104 0 21 0 0 0 chr4 33340942 33340963 -150947699 + AT_rich Low_complexity Low_complexity 1 21 0 1942 152 3 3 chr4 33340966 33341275 -150947387 + AluSx SINE Alu 1 309 -3 475 45 0 0 chr4 33341964 33342031 -150946631 - AluY SINE Alu 0 310 244 9722 31 3 161 chr4 33343790 33345328 -150943334 - SVA Other Other 0 1386 91 261 0 0 0 chr4 33345784 33345813 -150942849 + (T)n Simple_repeat Simple_repeat 1 29 0 236 362 29 0 chr4 33347796 33347901 -150940761 + L2 LINE L2 3206 3313 0 1023 233 34 90 chr4 33348007 33348364 -150940298 + MLT1D LTR MaLR 1 337 -168 201 239 82 98 chr4 33348515 33348599 -150940063 + L2 LINE L2 3099 3183 -130 2162 110 0 17 chr4 33348599 33348898 -150939764 - AluSg SINE Alu -16 294 1 201 239 82 98 chr4 33348898 33348997 -150939665 + L2 LINE L2 3183 3279 -34 656 99 2 0 chr4 33348997 33349128 -150939534 + L1PA8 LINE L1 6012 6183 0 239 262 0 10 chr4 33349148 33349251 -150939411 + GA-rich Low_complexity Low_complexity 3 104 0 339 320 33 0 chr4 33349599 33349721 -150938941 - L2 LINE L2 -666 2648 2523 262 259 43 86 chr4 33350260 33350376 -150938286 + L2 LINE L2 3203 3313 0 * 591 290 55 47 chr4 33350374 33350629 -150938033 + MIR SINE MIR 6 262 0 2802 16 0 0 chr4 33351635 33351944 -150936718 + AluY SINE Alu 1 309 -2 214 273 31 31 chr4 33353813 33353941 -150934721 + (CATATA)n Simple_repeat Simple_repeat 1 128 0 23 33 0 0 chr4 33354047 33354077 -150934585 + AT_rich Low_complexity Low_complexity 1 30 0 200 291 107 29 chr4 33354428 33354531 -150934131 - MER5A DNA MER1_type -78 111 1 192 291 89 13 chr4 33354579 33354658 -150934004 + MIR3 SINE MIR 72 156 -52 350 281 103 11 chr4 33354681 33354866 -150933796 - MER112 DNA MER1_type -41 219 18 39 74 0 0 chr4 33355141 33355222 -150933440 + AT_rich Low_complexity Low_complexity 1 81 0 672 258 0 11 chr4 33355579 33355757 -150932905 - MER5B DNA MER1_type -2 176 1 21 36 0 0 chr4 33355847 33355875 -150932787 + AT_rich Low_complexity Low_complexity 1 28 0 2030 324 13 41 chr4 33356078 33356505 -150932157 + L1PA13 LINE L1 1 439 -6348 1603 154 90 39 chr4 33356505 33356862 -150931800 - THE1C LTR MaLR 0 375 1 8854 152 12 44 chr4 33356862 33358492 -150930170 - THE1C-int LTR MaLR 0 1580 4 1393 156 121 38 chr4 33358495 33358841 -150929821 - THE1C LTR MaLR 0 375 1 2030 324 13 41 chr4 33358841 33359185 -150929477 + L1PA13 LINE L1 440 755 -6032 1631 228 33 10 chr4 33359251 33359646 -150929016 + L1PA13 LINE L1 1513 1916 -4871 919 236 84 55 chr4 33359953 33360407 -150928255 + MLT1C LTR MaLR 1 467 0 287 266 11 21 chr4 33360784 33360878 -150927784 + (TA)n Simple_repeat Simple_repeat 2 94 0 202 349 99 36 chr4 33361176 33361480 -150927182 - L2 LINE L2 -337 2977 2655 189 147 0 0 chr4 33362049 33362083 -150926579 + (TC)n Simple_repeat Simple_repeat 2 35 0 2635 76 6 8 chr4 33362115 33362471 -150926191 + THE1A LTR MaLR 1 355 0 313 299 0 0 chr4 33362936 33363003 -150925659 - MLT1K LTR MaLR -342 246 180 625 237 56 47 chr4 33363008 33363223 -150925439 - MER20 DNA MER1_type 0 219 3 1729 196 25 11 chr4 33364246 33364604 -150924058 - MLT1A1 LTR MaLR 0 365 3 252 59 0 0 chr4 33364604 33364638 -150924024 + (CAT)n Simple_repeat Simple_repeat 3 36 0 1061 224 41 103 chr4 33364746 33365363 -150923299 + MLT1E3 LTR MaLR 7 610 -14 420 316 0 0 chr4 33365423 33365521 -150923141 + MIR SINE MIR 3 100 -162 183 80 0 0 chr4 33366027 33366052 -150922610 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr4 33367199 33367222 -150921440 + AT_rich Low_complexity Low_complexity 1 23 0 2451 119 3 17 chr4 33369810 33370170 -150918492 + THE1A LTR MaLR 1 355 0 11072 101 15 8 chr4 33370170 33371738 -150916924 + THE1A-int LTR MaLR 1 1580 0 2360 117 6 0 chr4 33371738 33372089 -150916573 + THE1A LTR MaLR 1 353 -2 421 289 118 21 chr4 33372363 33372550 -150916112 - MIR SINE MIR -3 259 55 240 309 80 37 chr4 33372568 33372730 -150915932 + L2 LINE L2 3133 3301 -12 4465 47 40 11 chr4 33374293 33374867 -150913795 + LTR10C LTR ERV1 1 591 0 274 320 13 0 chr4 33374998 33375073 -150913589 + polypyrimidine Low_complexity Low_complexity 5 80 0 2558 128 66 2 chr4 33375279 33375687 -150912975 + MER57B LTR ERV1 1 434 0 186 103 0 0 chr4 33376463 33376492 -150912170 + (TTTTG)n Simple_repeat Simple_repeat 4 32 0 519 92 0 0 chr4 33377455 33377542 -150911120 + (TG)n Simple_repeat Simple_repeat 2 88 0 2032 86 4 11 chr4 33380784 33381103 -150907559 + AluY SINE Alu 17 333 0 209 32 0 32 chr4 33382116 33382147 -150906515 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 2299 76 0 3 chr4 33382150 33382438 -150906224 - AluY SINE Alu -24 287 1 514 313 68 16 chr4 33382951 33383143 -150905519 - MIR3 SINE MIR -5 203 2 1601 152 61 7 chr4 33383582 33383892 -150904770 + L1MA4A LINE L1 5977 6303 0 7762 142 46 8 chr4 33384270 33385511 -150903151 + THE1C-int LTR MaLR 286 1573 -7 1933 154 56 8 chr4 33385517 33385875 -150902787 + THE1C LTR MaLR 1 375 0 374 369 45 0 chr4 33385952 33386131 -150902531 - MIR SINE MIR -70 192 6 308 211 29 0 chr4 33386965 33387069 -150901593 + (TA)n Simple_repeat Simple_repeat 1 107 0 465 128 51 0 chr4 33387072 33387150 -150901512 + THE1C LTR MaLR 97 178 -197 281 185 43 0 chr4 33387150 33387242 -150901420 + (TA)n Simple_repeat Simple_repeat 2 97 0 240 276 13 26 chr4 33387949 33388025 -150900637 + L2 LINE L2 3185 3259 -54 411 255 99 28 chr4 33389666 33389807 -150898855 + MER5A DNA MER1_type 3 153 -36 411 38 0 0 chr4 33389864 33389917 -150898745 + (GTTTG)n Simple_repeat Simple_repeat 2 54 0 1823 172 0 0 chr4 33389917 33390202 -150898460 - AluSx SINE Alu -27 285 1 282 254 14 0 chr4 33390420 33390491 -150898171 + L1ME LINE L1 5601 5672 -449 2470 70 0 0 chr4 33390540 33390841 -150897821 + AluY SINE Alu 1 301 -10 981 191 4 49 chr4 33440841 33441066 -150847596 - L1M2 LINE L1 -484 5807 5593 216 219 0 0 chr4 33441230 33441271 -150847391 + T-rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr4 33441918 33441948 -150846714 + AT_rich Low_complexity Low_complexity 1 30 0 35 63 0 0 chr4 33443533 33443596 -150845066 + AT_rich Low_complexity Low_complexity 1 63 0 238 303 13 13 chr4 33443620 33443696 -150844966 + MIR SINE MIR 51 126 -136 665 319 82 6 chr4 33443796 33444113 -150844549 + L2 LINE L2 796 1136 -2178 1022 304 131 38 chr4 33444612 33445171 -150843491 + L2 LINE L2 1163 1773 -1541 21 36 0 0 chr4 33445703 33445731 -150842931 + AT_rich Low_complexity Low_complexity 1 28 0 448 236 9 125 chr4 33446132 33446555 -150842107 + L1MC5 LINE L1 6900 7273 -688 224 237 92 0 chr4 33446698 33446774 -150841888 + L2 LINE L2 3163 3245 -68 458 286 132 78 chr4 33447034 33447153 -150841509 - HAL1 LINE L1 -135 2372 2261 1002 136 51 6 chr4 33447153 33447330 -150841332 - L1PA15 LINE L1 0 6165 5981 458 286 132 78 chr4 33447330 33448035 -150840627 - HAL1 LINE L1 -246 2261 1503 507 218 85 24 chr4 33448335 33448546 -150840116 - MER113 DNA MER1_type? -216 305 82 2175 57 7 3 chr4 33449855 33450138 -150838524 + L1PA7 LINE L1 5871 6154 0 188 151 151 57 chr4 33451363 33451416 -150837246 + L2 LINE L2 3255 3312 -1 231 296 138 54 chr4 33452359 33452562 -150836100 + MIR SINE MIR 43 262 0 396 270 95 7 chr4 33452639 33452776 -150835886 - L2 LINE L2 0 3313 3165 1817 87 11 30 chr4 33452809 33453073 -150835589 + AluSx SINE Alu 39 297 -15 549 286 67 6 chr4 33453140 33453318 -150835344 - MIR SINE MIR -37 225 37 683 238 99 6 chr4 33454287 33454459 -150834203 - MER5A DNA MER1_type -1 188 1 755 251 165 39 chr4 33454625 33455241 -150833421 - LTR41 LTR ERVL -12 761 5 282 311 33 0 chr4 33455378 33455468 -150833194 + L2 LINE L2 3178 3270 -2 21 0 0 0 chr4 33456456 33456477 -150832185 + AT_rich Low_complexity Low_complexity 1 21 0 2014 124 0 0 chr4 33456484 33456822 -150831840 - AluSx SINE Alu 0 338 1 2068 197 24 53 chr4 33457152 33457696 -150830966 - L1MA7 LINE L1 -6 6285 5758 252 296 11 11 chr4 33458331 33458419 -150830243 + GA-rich Low_complexity Low_complexity 1 88 0 759 156 56 38 chr4 33458666 33458826 -150829836 + MER31B LTR ERV1 300 462 -4 2075 118 7 3 chr4 33458839 33459144 -150829518 - AluSp SINE Alu -7 306 1 587 282 120 24 chr4 33459190 33459481 -150829181 + L2 LINE L2 2995 3313 0 201 250 0 0 chr4 33459720 33459760 -150828902 + polypurine Low_complexity Low_complexity 3 42 0 276 185 31 15 chr4 33459771 33459836 -150828826 + MER34B LTR ERV1 405 470 -95 21 36 0 0 chr4 33460160 33460188 -150828474 + AT_rich Low_complexity Low_complexity 1 28 0 576 118 0 126 chr4 33460440 33460567 -150828095 + MER34B LTR ERV1 1 111 -454 1473 147 15 15 chr4 33460667 33460933 -150827729 + MER34B LTR ERV1 295 560 -5 33 97 0 0 chr4 33461887 33461990 -150826672 + AT_rich Low_complexity Low_complexity 1 103 0 1696 142 30 53 chr4 33462098 33462401 -150826261 + AluSg SINE Alu 1 296 -14 204 277 0 0 chr4 33462806 33462871 -150825791 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 212 0 36 0 chr4 33463695 33463723 -150824939 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 210 71 0 0 chr4 33464409 33464437 -150824225 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 217 244 26 39 chr4 33465253 33465331 -150823331 + CT-rich Low_complexity Low_complexity 6 82 0 250 362 43 0 chr4 33465681 33465797 -150822865 - MIR3 SINE MIR -45 163 43 863 260 21 47 chr4 33466115 33466454 -150822208 + MLT2C1 LTR ERVL 3 332 -65 623 69 30 23 chr4 33466495 33466626 -150822036 + (TCTA)n Simple_repeat Simple_repeat 2 133 0 254 83 0 0 chr4 33466632 33466668 -150821994 + MLT2F LTR ERVL 620 655 -8 23 0 0 0 chr4 33467119 33467142 -150821520 + AT_rich Low_complexity Low_complexity 1 23 0 449 279 71 33 chr4 33467589 33467761 -150820901 + MLT1J1 LTR MaLR 274 446 0 490 306 89 62 chr4 33469802 33470138 -150818524 + L2 LINE L2 2969 3313 0 201 196 0 0 chr4 33470138 33470184 -150818478 + (TGAG)n Simple_repeat Simple_repeat 2 47 0 2419 186 105 21 chr4 33470224 33470793 -150817869 + LTR48 LTR ERV1 1 617 -170 263 170 21 0 chr4 33470850 33470897 -150817765 - LTR48B LTR ERV1 -87 557 510 1880 144 24 3 chr4 33471268 33471559 -150817103 + AluSx SINE Alu 1 297 -15 29 70 0 0 chr4 33471571 33471628 -150817034 + AT_rich Low_complexity Low_complexity 1 57 0 328 225 22 22 chr4 33471927 33472016 -150816646 + MIR SINE MIR 146 234 -28 384 181 0 0 chr4 33472456 33472539 -150816123 + GA-rich Low_complexity Low_complexity 2 84 0 447 250 83 81 chr4 33473269 33473447 -150815215 + MIR3 SINE MIR 8 182 -26 189 0 0 0 chr4 33473836 33473857 -150814805 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 573 294 75 0 chr4 33473857 33474044 -150814618 - MER58A DNA MER1_type -22 202 2 374 192 40 20 chr4 33474196 33474295 -150814367 + L1MA9 LINE L1 6153 6253 -59 5529 142 11 34 chr4 33474295 33475881 -150812781 + pTR5 LTR ERV1 745 2436 -2 375 127 0 28 chr4 33475882 33475953 -150812709 + L1MA9 LINE L1 6243 6311 -1 1703 141 56 0 chr4 33476219 33476489 -150812173 + AluSq SINE Alu 1 285 -28 2062 119 3 0 chr4 33476628 33476922 -150811740 + AluSq SINE Alu 1 295 -18 827 332 151 11 chr4 33477541 33478071 -150810591 + L2 LINE L2 1879 2482 -832 267 392 15 30 chr4 33478141 33478340 -150810322 + L2 LINE L2 2665 2860 -454 283 300 106 62 chr4 33478479 33478752 -150809910 + L2 LINE L2 3029 3313 0 2258 133 23 6 chr4 33480699 33481051 -150807611 + THE1B LTR MaLR 1 358 -6 245 348 92 12 chr4 33481652 33481816 -150806846 - MIR3 SINE MIR -9 199 23 2921 155 6 22 chr4 33482198 33482734 -150805928 - L1PA16 LINE L1 -9 6157 5631 24 0 0 0 chr4 33482752 33482776 -150805886 + AT_rich Low_complexity Low_complexity 1 24 0 275 289 52 31 chr4 33483041 33483138 -150805524 + L2 LINE L2 3215 3313 0 2487 57 0 25 chr4 33484441 33484759 -150803903 + AluY SINE Alu 1 310 -1 393 286 10 101 chr4 33484764 33484963 -150803699 - MLT1J1 LTR MaLR -148 298 118 2241 86 3 49 chr4 33484995 33485321 -150803341 + AluSp SINE Alu 1 311 -2 21 0 0 0 chr4 33486483 33486504 -150802158 + AT_rich Low_complexity Low_complexity 1 21 0 182 350 17 17 chr4 33486704 33486764 -150801898 - MIR SINE MIR -133 75 16 203 200 0 40 chr4 33486869 33486944 -150801718 + A-rich Low_complexity Low_complexity 1 72 0 327 314 105 19 chr4 33487881 33488139 -150800523 + L2 LINE L2 2624 2903 -411 25 0 0 0 chr4 33488553 33488578 -150800084 + AT_rich Low_complexity Low_complexity 1 25 0 1308 157 14 128 chr4 33488670 33489015 -150799647 + AluJb SINE Alu 1 306 -6 260 316 61 26 chr4 33489358 33489472 -150799190 + MIR SINE MIR 21 138 -70 23 0 0 0 chr4 33489668 33489691 -150798971 + AT_rich Low_complexity Low_complexity 1 23 0 3806 153 39 14 chr4 33490732 33491423 -150797239 + Tigger1 DNA MER2_type 1710 2417 -1 204 222 0 0 chr4 33491677 33491713 -150796949 + polypurine Low_complexity Low_complexity 4 39 0 566 302 54 15 chr4 33491870 33492075 -150796587 + MIR SINE MIR 31 243 -19 23 33 0 0 chr4 33492099 33492129 -150796533 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 33492252 33492273 -150796389 + AT_rich Low_complexity Low_complexity 1 21 0 319 253 75 40 chr4 33492273 33492447 -150796215 + L1ME4a LINE L1 5942 6121 0 216 163 0 0 chr4 33492653 33492696 -150795966 + A-rich Low_complexity Low_complexity 1 43 0 1358 184 80 3 chr4 33492778 33493066 -150795596 + 7SLRNA srpRNA srpRNA 2 311 -9 583 295 34 19 chr4 33493922 33494129 -150794533 + MIR SINE MIR 12 221 -41 407 292 17 8 chr4 33494394 33494514 -150794148 + L2 LINE L2 2184 2304 -1010 451 208 9 57 chr4 33494655 33494761 -150793901 + MER5A DNA MER1_type 3 103 -86 873 97 0 0 chr4 33494762 33494875 -150793787 - AluSg SINE Alu -197 113 1 189 351 39 13 chr4 33495263 33495340 -150793322 - L2 LINE L2 0 3313 3235 8294 160 46 10 chr4 33495424 33495966 -150792696 + Tigger1 DNA MER2_type 30 551 -1867 1815 159 25 0 chr4 33495966 33496287 -150792375 + AluSx SINE Alu 1 328 0 8294 160 46 10 chr4 33496287 33497220 -150791442 + Tigger1 DNA MER2_type 551 1559 -859 1349 98 10 10 chr4 33497805 33498009 -150790653 - L1PA14 LINE L1 -5 6156 5953 17838 169 48 7 chr4 33498015 33501871 -150786791 - L1PA12 LINE L1 -3537 4047 42 198 0 0 0 chr4 33501897 33501919 -150786743 + (A)n Simple_repeat Simple_repeat 1 22 0 240 321 223 0 chr4 33502361 33502545 -150786117 + L2 LINE L2 2737 2961 -353 221 407 50 7 chr4 33502731 33502871 -150785791 - L2 LINE L2 -229 3043 2898 643 247 77 52 chr4 33503273 33503701 -150784961 - MLT1D LTR MaLR 0 505 21 28 29 0 0 chr4 33504167 33504202 -150784460 + AT_rich Low_complexity Low_complexity 1 35 0 399 271 41 0 chr4 33504260 33504382 -150784280 + MLT2E LTR ERVL 1 127 -501 24 0 0 0 chr4 33507329 33507353 -150781309 + AT_rich Low_complexity Low_complexity 1 24 0 186 43 0 0 chr4 33508758 33508781 -150779881 + (TTG)n Simple_repeat Simple_repeat 2 24 0 905 247 24 43 chr4 33509532 33509787 -150778875 + MLT1A2 LTR MaLR 6 255 -119 2423 93 0 3 chr4 33510056 33510369 -150778293 - AluSq SINE Alu -1 312 1 315 241 23 35 chr4 33512461 33512548 -150776114 + MIR3 SINE MIR 87 172 -36 731 237 13 0 chr4 33512650 33512983 -150775679 + FRAM SINE Alu 1 199 0 1014 149 0 6 chr4 33512802 33513016 -150775646 + (GAA)n Simple_repeat Simple_repeat 1 213 0 198 103 0 0 chr4 33513850 33513879 -150774783 + (TATG)n Simple_repeat Simple_repeat 4 32 0 355 169 0 0 chr4 33514268 33514327 -150774335 - MER30 DNA MER1_type -36 194 136 2091 132 7 0 chr4 33514343 33514639 -150774023 + AluSx SINE Alu 3 300 -12 25 0 0 0 chr4 33515025 33515050 -150773612 + AT_rich Low_complexity Low_complexity 1 25 0 22 99 0 0 chr4 33515250 33515321 -150773341 + AT_rich Low_complexity Low_complexity 1 71 0 1875 181 56 0 chr4 33515577 33515898 -150772764 + LTR32 LTR ERVL 14 352 -119 766 190 0 19 chr4 33515941 33516099 -150772563 + LTR32 LTR ERVL 317 471 0 183 231 46 15 chr4 33516154 33516219 -150772443 - MIR SINE MIR -95 167 101 1790 228 78 5 chr4 33516273 33516860 -150771802 - MER39 LTR ERV1 0 707 4 523 289 59 16 chr4 33516883 33517070 -150771592 + MIR SINE MIR 68 262 0 608 86 0 11 chr4 33517124 33517217 -150771445 + (TTCC)n Simple_repeat Simple_repeat 1 92 0 223 383 19 9 chr4 33517407 33517514 -150771148 - MIR SINE MIR -96 166 59 295 289 31 19 chr4 33517807 33517966 -150770696 + (TATATG)n Simple_repeat Simple_repeat 4 164 0 252 322 126 37 chr4 33518389 33518603 -150770059 + MIR SINE MIR 24 256 -6 1723 213 18 45 chr4 33518808 33519297 -150769365 + MER31A LTR ERV1 1 476 -9 524 319 97 42 chr4 33519318 33519792 -150768870 + L2 LINE L2 2183 2682 -632 1365 211 68 53 chr4 33519800 33520253 -150768409 + MER31B LTR ERV1 3 541 -2 201 147 0 0 chr4 33520311 33520345 -150768317 + (AAATG)n Simple_repeat Simple_repeat 2 35 0 238 348 78 10 chr4 33520420 33520624 -150768038 + L2 LINE L2 2967 3184 -129 201 300 71 0 chr4 33522229 33522299 -150766363 - MER91C DNA MER1_type -30 110 36 696 273 64 29 chr4 33523036 33523534 -150765128 + L1ME3A LINE L1 5378 5894 -276 1780 176 6 6 chr4 33523611 33523923 -150764739 + AluJb SINE Alu 1 312 0 237 185 15 15 chr4 33524585 33524650 -150764012 - LTR49 LTR ERV1 -36 559 495 1773 180 0 3 chr4 33524722 33525017 -150763645 + AluSx SINE Alu 1 294 -18 277 43 43 0 chr4 33525017 33525064 -150763598 + (TA)n Simple_repeat Simple_repeat 1 49 0 3030 127 60 10 chr4 33525071 33525589 -150763073 - MER39B LTR ERV1 -109 544 1 464 165 0 0 chr4 33525839 33525930 -150762732 - L1MA9 LINE L1 -1 6311 6221 735 170 30 14 chr4 33525939 33526097 -150762565 - L1MA9 LINE L1 -137 6154 5991 2053 134 3 0 chr4 33527613 33527897 -150760765 + AluSx SINE Alu 2 286 -26 385 40 66 0 chr4 33527897 33527973 -150760689 + (TA)n Simple_repeat Simple_repeat 1 81 0 2112 106 0 26 chr4 33528074 33528376 -150760286 + AluY SINE Alu 1 294 -17 306 194 0 0 chr4 33528377 33528439 -150760223 + (CATA)n Simple_repeat Simple_repeat 3 64 0 267 340 34 20 chr4 33529286 33529433 -150759229 - MLT1K LTR MaLR -168 420 272 296 255 39 0 chr4 33530053 33530206 -150758456 + CT-rich Low_complexity Low_complexity 2 160 0 25 0 0 0 chr4 33530637 33530662 -150758000 + AT_rich Low_complexity Low_complexity 1 25 0 1027 207 31 22 chr4 33530882 33531109 -150757553 - MLT1C LTR MaLR -48 419 191 1945 157 0 7 chr4 33531112 33531417 -150757245 - AluJo SINE Alu -9 303 1 296 307 121 62 chr4 33531852 33532109 -150756553 + MLT1J2 LTR MaLR 64 335 -115 29 0 0 0 chr4 33532132 33532161 -150756501 + AT_rich Low_complexity Low_complexity 1 29 0 295 369 34 73 chr4 33532246 33532479 -150756183 + L2 LINE L2 3032 3255 -17 7663 81 21 2 chr4 33532763 33534598 -150754064 + L1PA7 LINE L1 4289 6153 -1 207 0 0 0 chr4 33535825 33535848 -150752814 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 14900 216 31 43 chr4 33535851 33536919 -150751743 + L1PA16 LINE L1 10 1090 -5765 2350 126 22 0 chr4 33536919 33537275 -150751387 + THE1B LTR MaLR 1 364 0 14900 216 31 43 chr4 33537275 33538426 -150750236 + L1PA16 LINE L1 1090 2254 -4601 1727 163 4 0 chr4 33538426 33538696 -150749966 + AluSx SINE Alu 3 273 -39 219 36 0 0 chr4 33538704 33538732 -150749930 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 14900 216 31 43 chr4 33538732 33541733 -150746929 + L1PA16 LINE L1 2261 5297 -1558 189 0 0 0 chr4 33541733 33541754 -150746908 + (TAAAA)n Simple_repeat Simple_repeat 5 25 0 14900 216 31 43 chr4 33541754 33541932 -150746730 + L1PA16 LINE L1 5297 5476 -1379 3035 85 71 2 chr4 33541932 33542316 -150746346 + MLT2A2 LTR ERVL 1 418 -35 693 24 0 0 chr4 33542316 33542399 -150746263 + (TCTA)n Simple_repeat Simple_repeat 3 85 0 3035 85 71 2 chr4 33542399 33542438 -150746224 + MLT2A2 LTR ERVL 418 453 0 14900 216 31 43 chr4 33542438 33543236 -150745426 + L1PA16 LINE L1 5476 6112 -743 2885 163 72 0 chr4 33543338 33543892 -150744770 + L1PA16 LINE L1 6271 6864 -5 704 308 124 14 chr4 33544595 33544942 -150743720 - LTR16A LTR ERVL -2 448 64 227 203 34 17 chr4 33545394 33545453 -150743209 + L2 LINE L2 3202 3261 -11 333 200 0 0 chr4 33546310 33546365 -150742297 + Tigger5 DNA MER2_type 1 55 -2268 * 375 162 15 15 chr4 33546334 33546402 -150742260 + Tigger5 DNA MER2_type 2251 2318 -5 363 261 0 11 chr4 33546424 33546512 -150742150 - Tigger5 DNA MER2_type -2235 88 2 440 195 0 11 chr4 33546565 33546652 -150742010 + Tigger5 DNA MER2_type 2238 2323 0 3226 195 6 5 chr4 33547707 33548352 -150740310 + L1MB3 LINE L1 5527 6172 -11 65 45 0 9 chr4 33548464 33548502 -150740160 + AT_rich Low_complexity Low_complexity 1 38 -72 2211 102 0 0 chr4 33548502 33548797 -150739865 + AluSx SINE Alu 3 297 -15 65 45 0 9 chr4 33548797 33548869 -150739793 + AT_rich Low_complexity Low_complexity 38 110 0 2168 90 3 10 chr4 33549341 33549640 -150739022 + AluSp SINE Alu 1 297 -16 185 395 32 0 chr4 33550046 33550170 -150738492 + L2 LINE L2 3181 3308 -5 1842 68 38 4 chr4 33550478 33550741 -150737921 + AluY SINE Alu 19 290 -21 186 351 13 13 chr4 33553373 33553450 -150735212 + MIR SINE MIR 56 132 -130 196 263 35 18 chr4 33553475 33553532 -150735130 - L2 LINE L2 -1 3312 3255 1037 199 104 128 chr4 33554755 33554798 -150733864 - MLT2D LTR ERVL 0 414 372 369 0 0 0 chr4 33554798 33554839 -150733823 + (TG)n Simple_repeat Simple_repeat 2 42 0 1037 199 104 128 chr4 33554839 33555218 -150733444 - MLT2D LTR ERVL -42 372 2 287 376 119 29 chr4 33555670 33555880 -150732782 + L3 LINE CR1 1340 1568 -9 283 312 68 51 chr4 33555945 33556256 -150732406 + L1ME LINE L1 5539 5854 -267 555 163 0 78 chr4 33556298 33556427 -150732235 + L1ME LINE L1 5588 5706 -458 21 36 0 0 chr4 33558158 33558186 -150730476 + AT_rich Low_complexity Low_complexity 1 28 0 838 197 60 16 chr4 33559141 33559324 -150729338 + MER2 DNA MER2_type 155 345 0 910 121 0 0 chr4 33560011 33560143 -150728519 + MLT2A1 LTR ERVL 1 132 -312 379 311 93 13 chr4 33560123 33560274 -150728388 + MLT1J2 LTR MaLR 50 212 -238 * 270 241 93 56 chr4 33560646 33560754 -150727908 - LTR67 LTR ERVL -17 540 429 2258 109 0 0 chr4 33561064 33561366 -150727296 + AluY SINE Alu 3 304 -7 6540 201 67 45 chr4 33562469 33564267 -150724395 + L1MCa LINE L1 3 1932 -4494 1872 161 0 0 chr4 33564270 33564549 -150724113 + AluSx SINE Alu 4 282 -30 246 128 0 0 chr4 33564563 33564602 -150724060 + (TA)n Simple_repeat Simple_repeat 2 40 0 347 189 126 0 chr4 33564724 33564835 -150723827 + AluSc SINE Alu 155 279 -20 1016 175 133 45 chr4 33564890 33565088 -150723574 + L1MCa LINE L1 1934 2170 -4256 391 173 0 25 chr4 33565088 33565169 -150723493 + MADE1 DNA Mariner 1 79 -1 1016 175 133 45 chr4 33565169 33565279 -150723383 + L1MCa LINE L1 2170 2269 -4157 1096 79 0 7 chr4 33565279 33565419 -150723243 + AluSq/x SINE Alu 1 139 -174 203 170 19 38 chr4 33565629 33565682 -150722980 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 23 0 0 0 chr4 33566188 33566211 -150722451 + AT_rich Low_complexity Low_complexity 1 23 0 7241 199 37 24 chr4 33567374 33568996 -150719666 + L1PA16 LINE L1 2 2072 -4777 * 11968 231 21 26 chr4 33568981 33573413 -150715249 + L1PA16 LINE L1 2463 6860 -9 961 195 284 3 chr4 33574568 33574860 -150713802 - MLT1A2 LTR MaLR 0 374 1 540 235 251 22 chr4 33574970 33575149 -150713513 + MER58A DNA MER1_type 1 220 -4 1057 308 121 10 chr4 33576000 33576481 -150712181 + MER69 DNA AcHobo 106 639 -587 367 280 178 0 chr4 33576483 33576758 -150711904 + MER69 DNA AcHobo 2039 2362 -164 209 208 0 19 chr4 33579675 33579728 -150708934 + (CAA)n Simple_repeat Simple_repeat 1 52 0 192 125 0 0 chr4 33579946 33579978 -150708684 + (GA)n Simple_repeat Simple_repeat 1 32 0 1293 191 12 12 chr4 33580212 33580469 -150708193 + L1MB1 LINE L1 5911 6167 -1 2025 117 0 0 chr4 33582421 33582702 -150705960 + AluSc SINE Alu 15 295 -14 392 0 30 45 chr4 33583165 33583231 -150705431 + (TTTC)n Simple_repeat Simple_repeat 2 66 0 323 284 11 0 chr4 33583247 33583342 -150705320 - L1MDa LINE L1 -6435 105 10 25 0 0 0 chr4 33583551 33583576 -150705086 + AT_rich Low_complexity Low_complexity 1 25 0 2135 118 7 0 chr4 33584726 33585030 -150703632 + AluSx SINE Alu 1 306 -6 21 57 0 0 chr4 33585990 33586025 -150702637 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr4 33587308 33587330 -150701332 + AT_rich Low_complexity Low_complexity 1 22 0 39 0 0 0 chr4 33587524 33587563 -150701099 + AT_rich Low_complexity Low_complexity 1 39 0 898 265 111 31 chr4 33587862 33589192 -150699470 + L1ME1 LINE L1 4075 5664 -502 1762 177 3 6 chr4 33589192 33589503 -150699159 - AluJb SINE Alu -2 310 1 898 265 111 31 chr4 33589503 33590000 -150698662 + L1ME1 LINE L1 5664 6120 -46 1496 123 9 4 chr4 33590437 33590665 -150697997 + LTR8A LTR ERV1 263 491 -236 246 62 0 0 chr4 33590676 33590708 -150697954 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1737 131 6 59 chr4 33590708 33591028 -150697634 - MER50 LTR ERV1 -135 599 297 1317 173 75 25 chr4 33591165 33591448 -150697214 + LTR8A LTR ERV1 406 725 -2 279 0 0 0 chr4 33591648 33591679 -150696983 + (TC)n Simple_repeat Simple_repeat 2 32 0 970 101 0 7 chr4 33591680 33591818 -150696844 + MER50 LTR ERV1 467 603 -131 240 167 0 0 chr4 33591892 33591940 -150696722 + (TA)n Simple_repeat Simple_repeat 1 48 0 22 0 0 0 chr4 33592406 33592428 -150696234 + AT_rich Low_complexity Low_complexity 1 22 0 682 318 58 58 chr4 33592666 33593112 -150695550 - LTR16B LTR ERVL -13 451 6 330 293 36 14 chr4 33593125 33593265 -150695397 - HERV16 LTR ERVL -64 4932 4790 1094 255 24 32 chr4 33593356 33593697 -150694965 - MLT1A1 LTR MaLR -27 338 1 514 341 28 28 chr4 33593760 33594085 -150694577 - HERVL LTR ERVL -624 5140 4816 189 191 43 85 chr4 33594098 33594145 -150694517 - L3 LINE CR1 -238 1339 1295 308 336 0 0 chr4 33594159 33594266 -150694396 - HERVL LTR ERVL -1029 4735 4629 * 356 334 5 36 chr4 33594256 33594524 -150694138 - HERVL LTR ERVL -2256 3229 2976 442 113 52 0 chr4 33594571 33594668 -150693994 + (TA)n Simple_repeat Simple_repeat 2 103 0 * 1757 331 46 36 chr4 33594667 33595841 -150692821 - HERVL LTR ERVL -2082 2914 1697 207 0 0 0 chr4 33595855 33595878 -150692784 + (TATG)n Simple_repeat Simple_repeat 4 26 0 1203 332 72 25 chr4 33596077 33596797 -150691865 - HERVL LTR ERVL -3553 1443 690 1375 121 232 11 chr4 33597496 33597776 -150690886 + MER61A LTR ERV1 1 342 -1 369 82 0 0 chr4 33597835 33597884 -150690778 + MADE1 DNA Mariner 3 51 -29 1119 274 142 18 chr4 33598537 33599038 -150689624 + L1ME3 LINE L1 5591 6153 -9 201 306 20 0 chr4 33599681 33599730 -150688932 - L2 LINE L2 -89 3183 3134 2984 134 15 0 chr4 33600596 33601073 -150687589 - LTR19A LTR ERV1 -2 484 1 21 100 0 0 chr4 33602159 33602229 -150686433 + AT_rich Low_complexity Low_complexity 1 70 0 1160 271 121 12 chr4 33602361 33602782 -150685880 + MLT1C LTR MaLR 1 467 0 359 282 69 19 chr4 33603302 33603547 -150685115 - L1MEd LINE L1 -4817 1312 1023 24 0 0 0 chr4 33603641 33603665 -150684997 + AT_rich Low_complexity Low_complexity 1 24 0 879 313 59 32 chr4 33603668 33604106 -150684556 - L1MEd LINE L1 -5257 862 413 951 280 73 21 chr4 33604165 33604643 -150684019 + L1ME3A LINE L1 5530 6032 -138 196 376 97 4 chr4 33604764 33604990 -150683672 + L2 LINE L2 2716 2962 -352 201 336 30 76 chr4 33605196 33605327 -150683335 + L2 LINE L2 3147 3271 -1 22 0 0 0 chr4 33605578 33605600 -150683062 + AT_rich Low_complexity Low_complexity 1 22 0 384 263 95 29 chr4 33606040 33606177 -150682485 - MIR SINE MIR -64 198 53 26 0 0 0 chr4 33607558 33607584 -150681078 + AT_rich Low_complexity Low_complexity 1 26 0 230 346 58 0 chr4 33607853 33607957 -150680705 - L2 LINE L2 -4 3309 3200 21 36 0 0 chr4 33608099 33608127 -150680535 + AT_rich Low_complexity Low_complexity 1 28 0 333 343 118 39 chr4 33608164 33608502 -150680160 - L2 LINE L2 -8 3264 2900 2332 69 0 20 chr4 33609037 33609341 -150679321 - AluY SINE Alu -13 298 1 188 297 31 16 chr4 33609842 33609906 -150678756 + MIR SINE MIR 36 100 -108 302 247 11 43 chr4 33610136 33610229 -150678433 + CT-rich Low_complexity Low_complexity 1 90 0 200 280 27 40 chr4 33610232 33610307 -150678355 + MIR3 SINE MIR 125 198 -10 270 291 84 67 chr4 33610952 33611131 -150677531 + MIR SINE MIR 37 218 -44 22 35 0 0 chr4 33613306 33613335 -150675327 + AT_rich Low_complexity Low_complexity 1 29 0 223 311 54 0 chr4 33613424 33613498 -150675164 - MIR SINE MIR -60 148 71 23 33 0 0 chr4 33613650 33613680 -150674982 + AT_rich Low_complexity Low_complexity 1 30 0 466 289 109 6 chr4 33613935 33614091 -150674571 + MIR SINE MIR 47 218 -44 262 255 11 53 chr4 33614524 33614618 -150674044 - MER103 DNA DNA -75 91 2 384 350 43 6 chr4 33614774 33614937 -150673725 + MIR SINE MIR 45 213 -49 348 64 0 0 chr4 33615049 33615096 -150673566 + (TTCC)n Simple_repeat Simple_repeat 3 49 0 2112 107 0 41 chr4 33615097 33615416 -150673246 - AluSp SINE Alu -7 306 1 9947 187 29 29 chr4 33616562 33620038 -150668624 - L1MA6 LINE L1 0 6482 3012 4302 254 43 41 chr4 33620038 33621872 -150666790 - L1MA6 LINE L1 -3950 2378 539 251 328 41 25 chr4 33621903 33622025 -150666637 - L1MA6 LINE L1 -5517 732 609 830 311 33 46 chr4 33622272 33622729 -150665933 - L1MA6 LINE L1 -5504 745 295 227 366 0 0 chr4 33622927 33623009 -150665653 - L2 LINE L2 -3 3269 3188 226 244 0 0 chr4 33623173 33623214 -150665448 - L2 LINE L2 -214 3058 3018 2341 69 0 20 chr4 33623255 33623560 -150665102 + AluY SINE Alu 1 299 -12 615 341 41 46 chr4 33624428 33625055 -150663607 - HERVL LTR ERVL -2499 2497 1855 970 9 0 18 chr4 33625232 33625342 -150663320 - AluSc SINE Alu -181 128 21 1429 206 36 46 chr4 33626824 33627236 -150661426 - Tigger2 DNA MER2_type -329 2389 1982 * 5050 150 48 3 chr4 33627207 33628074 -150660588 - Tigger2 DNA MER2_type -510 2208 1303 3088 136 16 2 chr4 33628872 33629356 -150659306 + LTR8A LTR ERV1 1 491 -236 246 62 0 0 chr4 33629367 33629399 -150659263 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1521 163 6 59 chr4 33629399 33629719 -150658943 - MER50 LTR ERV1 -135 599 297 332 239 0 106 chr4 33629978 33630091 -150658571 + Tigger2 DNA MER2_type 2608 2708 -10 191 266 16 16 chr4 33630168 33630232 -150658430 + MIR SINE MIR 65 128 -134 202 252 108 54 chr4 33630501 33630612 -150658050 + MIR SINE MIR 125 241 -21 205 297 50 40 chr4 33630632 33630733 -150657929 + L3 LINE CR1 1211 1312 -265 621 298 109 42 chr4 33631490 33631893 -150656769 + L1MDa LINE L1 33 462 -6078 256 293 17 0 chr4 33632096 33632154 -150656508 + L1MDa LINE L1 811 869 -5671 1181 205 79 48 chr4 33632433 33632853 -150655809 + L1MDa LINE L1 1025 1457 -5086 2331 63 3 19 chr4 33633045 33633360 -150655302 - AluY SINE Alu -1 310 1 24 53 0 0 chr4 33633788 33633826 -150654836 + AT_rich Low_complexity Low_complexity 1 38 0 3355 291 32 33 chr4 33634455 33635656 -150653006 - L1M2a LINE L1 -5962 1206 7 271 196 0 18 chr4 33635663 33635719 -150652943 + MER34 LTR ERV1 176 230 -312 772 288 93 21 chr4 33635823 33636047 -150652615 + MER90 LTR ERV1 41 306 -269 3780 140 22 64 chr4 33636047 33636768 -150651894 - LTR8 LTR ERV1 0 691 1 772 288 93 21 chr4 33636768 33636928 -150651734 + MER90 LTR ERV1 306 453 -122 21 36 0 0 chr4 33637116 33637144 -150651518 + AT_rich Low_complexity Low_complexity 1 28 0 333 0 0 0 chr4 33638051 33638088 -150650574 + (TG)n Simple_repeat Simple_repeat 2 38 0 263 312 46 18 chr4 33638172 33638281 -150650381 - MLT1J LTR MaLR -344 167 56 4831 115 3 0 chr4 33638991 33639697 -150648965 - L1PA12 LINE L1 0 6168 5461 975 259 94 49 chr4 33639700 33640476 -150648186 - L1M1 LINE L1 -3966 3599 2789 366 247 62 90 chr4 33640592 33640687 -150647975 - MLT1B LTR MaLR -217 173 84 1950 156 7 0 chr4 33640687 33640994 -150647668 + AluSq SINE Alu 2 310 -3 366 247 62 90 chr4 33640994 33641076 -150647586 - MLT1B LTR MaLR -306 84 1 836 284 66 20 chr4 33641143 33641446 -150647216 + MLT1D LTR MaLR 137 453 -52 2474 116 0 17 chr4 33641458 33641871 -150646791 - L1PA5 LINE L1 0 6154 5749 5347 134 10 14 chr4 33641996 33642385 -150646277 - L1PA13 LINE L1 -10 6153 5764 1320 151 24 114 chr4 33642385 33642717 -150645945 - AluYb8 SINE Alu -16 302 1 5347 134 10 14 chr4 33642717 33643122 -150645540 - L1PA13 LINE L1 -399 5764 5358 1731 93 0 0 chr4 33643122 33643337 -150645325 - AluSc SINE Alu -11 298 84 5347 134 10 14 chr4 33643337 33643592 -150645070 - L1PA13 LINE L1 -805 5358 5104 2824 205 5 2 chr4 33643695 33644266 -150644396 + L1P LINE L1 2407 2979 -3167 4198 201 7 3 chr4 33644269 33645145 -150643517 + L1P LINE L1 3778 4656 -1490 1200 109 0 60 chr4 33645145 33645328 -150643334 + AluSq SINE Alu 1 172 -141 797 157 0 0 chr4 33645328 33645443 -150643219 + AluSc SINE Alu 138 252 -57 970 123 0 0 chr4 33645444 33645574 -150643088 + AluSg/x SINE Alu 149 278 -34 861 129 0 7 chr4 33645599 33645738 -150642924 + L1P LINE L1 4644 4781 -1365 181 0 0 65 chr4 33646311 33646342 -150642320 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1440 175 0 16 chr4 33646358 33646615 -150642047 + L1MB3 LINE L1 5579 5831 -352 2192 97 0 59 chr4 33646616 33646937 -150641725 + AluSq SINE Alu 1 302 -11 1607 116 0 0 chr4 33647219 33647435 -150641227 - AluSg/x SINE Alu -1 309 94 38695 93 11 3 chr4 33647535 33652743 -150635919 - L1P LINE L1 -750 5396 151 798 129 21 0 chr4 33702745 33702885 -150585777 - L1PA5 LINE L1 -374 5780 5638 1355 283 58 30 chr4 33702889 33703420 -150585242 + MER74B LTR ERVL 66 611 -11 2523 243 75 3 chr4 33704484 33705195 -150583467 + L1MB8 LINE L1 5414 6175 -3 364 284 0 49 chr4 33706233 33706335 -150582327 - MER5A DNA MER1_type -55 134 38 216 0 0 0 chr4 33708397 33708421 -150580241 + (A)n Simple_repeat Simple_repeat 1 24 0 191 88 29 0 chr4 33709441 33709475 -150579187 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 219 122 49 0 chr4 33710088 33710129 -150578533 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 1030 222 10 28 chr4 33710323 33710724 -150577938 - MER31B LTR ERV1 -30 436 2 203 264 0 0 chr4 33710882 33710935 -150577727 - MIR SINE MIR -26 236 184 398 101 14 0 chr4 33712327 33712396 -150576266 + (TTCC)n Simple_repeat Simple_repeat 2 71 0 229 226 0 0 chr4 33712403 33712456 -150576206 - Charlie8 DNA MER1_type -2291 126 74 996 207 153 18 chr4 33712607 33712882 -150575780 - L1MB8 LINE L1 -16 6168 5857 255 368 40 16 chr4 33714033 33714158 -150574504 - MIR SINE MIR -124 138 11 1226 113 72 10 chr4 33714478 33714672 -150573990 - AluSc SINE Alu -20 289 84 915 221 57 94 chr4 33714723 33715126 -150573536 + MLT1B LTR MaLR 1 388 -2 268 75 0 25 chr4 33715876 33715916 -150572746 - MLT1I LTR MaLR 0 409 371 1046 106 129 18 chr4 33715962 33716132 -150572530 + MSTA LTR MaLR 5 193 -235 2957 180 37 28 chr4 33717258 33717941 -150570721 + L1MA7 LINE L1 5596 6284 -7 31 0 0 0 chr4 33718129 33718160 -150570502 + AT_rich Low_complexity Low_complexity 1 31 0 561 322 26 47 chr4 33719190 33719440 -150569222 + L2 LINE L2 2204 2447 -867 1419 231 22 22 chr4 33719440 33719804 -150568858 - MLT1A1 LTR MaLR 0 365 2 561 322 26 47 chr4 33719804 33719895 -150568767 + L2 LINE L2 2447 2538 -776 258 378 87 5 chr4 33720394 33720590 -150568072 + L2 LINE L2 2463 2674 -640 275 266 94 47 chr4 33720601 33720729 -150567933 + L2 LINE L2 3180 3313 0 661 205 13 26 chr4 33721085 33721241 -150567421 + MER105 DNA DNA 1 154 -50 310 266 0 0 chr4 33721245 33721324 -150567338 + MER105 DNA DNA 123 201 -3 956 120 25 0 chr4 33723100 33723258 -150565404 - AluY SINE Alu -148 163 2 384 310 28 21 chr4 33723719 33723861 -150564801 - MIR SINE MIR -1 261 119 932 221 81 110 chr4 33723861 33724226 -150564436 + MLT1A2 LTR MaLR 1 356 -18 327 352 19 0 chr4 33724245 33724353 -150564309 - MIR SINE MIR -140 122 13 1632 116 0 0 chr4 33724741 33724966 -150563696 - AluSg/x SINE Alu -10 302 78 24 0 0 0 chr4 33724967 33724991 -150563671 + AT_rich Low_complexity Low_complexity 1 24 0 350 407 9 30 chr4 33725823 33726157 -150562505 + L1M3a LINE L1 1614 1940 -5546 3291 262 23 34 chr4 33726774 33726974 -150561688 + L1M3a LINE L1 1898 2099 -5466 1661 188 0 23 chr4 33726974 33727282 -150561380 + AluJb SINE Alu 1 301 -11 3291 262 23 34 chr4 33727282 33728263 -150560399 + L1M3a LINE L1 2099 3066 -4499 752 151 14 50 chr4 33728925 33729064 -150559598 + FRAM SINE Alu 25 158 -18 28 0 0 0 chr4 33730196 33730224 -150558438 + AT_rich Low_complexity Low_complexity 1 28 0 731 244 76 5 chr4 33730414 33730611 -150558051 + MLT1D LTR MaLR 286 496 -9 208 273 68 0 chr4 33731893 33731937 -150556725 - L2 LINE L2 -22 3291 3245 187 277 0 0 chr4 33732992 33733039 -150555623 + MIR SINE MIR 216 262 0 496 250 104 10 chr4 33733186 33733378 -150555284 - MLT1H1 LTR MaLR -14 541 332 2193 81 3 0 chr4 33734637 33734934 -150553728 + AluY SINE Alu 12 309 -2 533 331 8 52 chr4 33735318 33735566 -150553096 - MIR SINE MIR -19 243 7 385 178 0 14 chr4 33735622 33735695 -150552967 - MLT1G LTR MaLR 0 590 519 298 257 97 35 chr4 33735788 33735932 -150552730 - MLT1I LTR MaLR -245 285 133 449 190 0 0 chr4 33737563 33737642 -150551020 - L1PB1 LINE L1 -291 5860 5782 235 154 39 0 chr4 33737630 33737682 -150550980 + L1MC4 LINE L1 6653 6706 -1336 * 749 70 0 0 chr4 33737686 33737786 -150550876 + L1PB1 LINE L1 5875 5974 -177 361 298 0 0 chr4 33738020 33738114 -150550548 - MLT1I LTR MaLR -229 180 87 324 247 12 0 chr4 33738513 33738594 -150550068 + MER99 DNA DNA 617 698 -130 45 0 0 0 chr4 33738600 33738645 -150550017 + AT_rich Low_complexity Low_complexity 1 45 0 273 246 14 0 chr4 33738782 33738851 -150549811 + T-rich Low_complexity Low_complexity 4 73 0 30 0 0 0 chr4 33738860 33738890 -150549772 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr4 33740591 33740629 -150548033 + AT_rich Low_complexity Low_complexity 1 38 0 28 71 0 0 chr4 33741440 33741496 -150547166 + AT_rich Low_complexity Low_complexity 1 56 0 180 0 0 0 chr4 33741664 33741684 -150546978 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 255 289 155 0 chr4 33742344 33742441 -150546221 + L2 LINE L2 3199 3310 -3 440 357 40 32 chr4 33742452 33742704 -150545958 + L2 LINE L2 2828 3081 -232 2277 66 3 41 chr4 33742982 33743302 -150545360 + AluY SINE Alu 1 308 -3 214 273 169 13 chr4 33744339 33744416 -150544246 + L2 LINE L2 3225 3313 0 21 0 0 0 chr4 33745966 33745987 -150542675 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr4 33747720 33747747 -150540915 + AT_rich Low_complexity Low_complexity 1 27 0 453 319 53 18 chr4 33748628 33748797 -150539865 - MLT1J2 LTR MaLR -62 388 214 484 287 8 0 chr4 33748801 33748923 -150539739 - MLT1J1 LTR MaLR -323 123 1 377 171 14 0 chr4 33749772 33749842 -150538820 - L1MA6 LINE L1 -174 6126 6056 * 547 142 113 3 chr4 33749835 33749953 -150538709 + L1MA6 LINE L1 6152 6288 -24 288 0 0 0 chr4 33751368 33751400 -150537262 + (CA)n Simple_repeat Simple_repeat 2 33 0 1461 109 0 5 chr4 33752565 33752775 -150535887 - THE1C LTR MaLR -28 347 139 283 337 189 34 chr4 33753197 33753968 -150534694 - L2 LINE L2 -534 2780 1890 22 35 0 0 chr4 33754314 33754343 -150534319 + AT_rich Low_complexity Low_complexity 1 29 0 1632 124 16 8 chr4 33754595 33754853 -150533809 - THE1C LTR MaLR 0 375 116 3962 41 2 0 chr4 33754854 33755338 -150533324 + L1PA5 LINE L1 5670 6154 0 287 699 0 0 chr4 33755338 33755481 -150533181 + (TA)n Simple_repeat Simple_repeat 1 143 0 272 178 0 5 chr4 33755481 33755567 -150533095 - THE1B LTR MaLR -246 129 1 247 327 117 12 chr4 33755617 33755779 -150532883 - MIR SINE MIR -48 214 36 498 219 36 55 chr4 33755822 33756041 -150532621 - L1MC5 LINE L1 -46 7915 7701 730 189 15 0 chr4 33756062 33756194 -150532468 - Tigger2 DNA MER2_type -10 2708 2575 3931 161 57 52 chr4 33756211 33757325 -150531337 + L1PA16 LINE L1 4984 6099 -67 234 0 0 0 chr4 33758068 33758094 -150530568 + (TA)n Simple_repeat Simple_repeat 2 27 0 189 0 0 0 chr4 33758093 33758114 -150530548 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 204 67 0 0 chr4 33761436 33761466 -150527196 + (TA)n Simple_repeat Simple_repeat 2 31 0 283 311 54 0 chr4 33761846 33761920 -150526742 + L2 LINE L2 3232 3309 -4 323 299 65 92 chr4 33762519 33762780 -150525882 + MIR SINE MIR 3 256 -6 329 157 29 10 chr4 33763147 33763249 -150525413 + GA-rich Low_complexity Low_complexity 2 105 0 280 353 21 26 chr4 33764868 33765058 -150523604 - MIR SINE MIR -71 191 3 276 30 0 0 chr4 33765200 33765233 -150523429 + (CA)n Simple_repeat Simple_repeat 2 34 0 1263 177 15 57 chr4 33765249 33765514 -150523148 - AluJo SINE Alu -25 287 34 283 200 0 0 chr4 33765684 33765739 -150522923 + L1MA6 LINE L1 3098 3152 -4413 * 2249 232 51 3 chr4 33765735 33766347 -150522315 + L1MA6 LINE L1 3798 4438 -3127 5155 165 26 34 chr4 33766419 33768428 -150520234 + L1MA6 LINE L1 5725 7718 -1 22 35 0 0 chr4 33768494 33768523 -150520139 + AT_rich Low_complexity Low_complexity 1 29 0 1213 274 67 42 chr4 33768711 33769145 -150519517 + LTR40a LTR ERVL 70 514 -5 1980 164 0 0 chr4 33770124 33770422 -150518240 + AluSx SINE Alu 6 303 -9 21 36 0 0 chr4 33770734 33770762 -150517900 + AT_rich Low_complexity Low_complexity 1 28 0 438 20 0 0 chr4 33770839 33770890 -150517772 + (TG)n Simple_repeat Simple_repeat 2 52 0 27 49 0 0 chr4 33770923 33770964 -150517698 + AT_rich Low_complexity Low_complexity 1 41 0 963 216 11 82 chr4 33771701 33771983 -150516679 - MLT1A1 LTR MaLR -103 262 1 282 242 15 15 chr4 33773417 33773483 -150515179 - MER81 DNA DNA -44 70 5 1148 128 5 35 chr4 33774124 33774327 -150514335 + AluSx SINE Alu 1 197 -115 893 163 0 14 chr4 33774487 33774634 -150514028 + AluSg/x SINE Alu 131 275 -37 204 40 0 0 chr4 33774640 33774665 -150513997 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 3410 179 18 5 chr4 33774683 33775313 -150513349 + L1MB1 LINE L1 5477 6114 -75 1251 204 129 67 chr4 33775326 33775729 -150512933 + MSTB1 LTR MaLR 5 432 0 805 174 14 82 chr4 33775734 33775941 -150512721 + L1MA10 LINE L1 6124 6316 -18 23 33 0 0 chr4 33775941 33775971 -150512691 + AT_rich Low_complexity Low_complexity 1 30 0 2024 128 10 0 chr4 33776876 33777173 -150511489 - AluSx SINE Alu -12 300 1 25 51 0 0 chr4 33777240 33777279 -150511383 + AT_rich Low_complexity Low_complexity 1 39 0 1448 207 87 7 chr4 33777279 33777588 -150511074 + MER2 DNA MER2_type 2 335 -10 216 0 0 0 chr4 33778801 33778825 -150509837 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 370 292 29 53 chr4 33779774 33779841 -150508821 + MLT1J LTR MaLR 1 68 -443 1172 254 104 29 chr4 33779841 33780322 -150508340 + MLT2B1 LTR ERVL 2 518 -2 370 292 29 53 chr4 33780322 33780425 -150508237 + MLT1J LTR MaLR 68 167 -344 183 80 0 0 chr4 33781121 33781146 -150507516 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 360 43 0 0 chr4 33781376 33781422 -150507240 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 23 0 0 0 chr4 33782028 33782051 -150506611 + AT_rich Low_complexity Low_complexity 1 23 0 323 313 33 20 chr4 33782378 33782528 -150506134 + MLT1I LTR MaLR 15 166 -243 929 211 88 32 chr4 33782677 33782715 -150505947 - MSTA LTR MaLR 0 428 394 2380 63 0 0 chr4 33782715 33783016 -150505646 + AluY SINE Alu 1 301 -10 929 211 88 32 chr4 33783016 33783228 -150505434 - MSTA LTR MaLR -34 394 164 2331 123 22 3 chr4 33783638 33783995 -150504667 - THE1B LTR MaLR 0 364 1 237 361 83 37 chr4 33784207 33784315 -150504347 - L2 LINE L2 -4 3268 3156 1529 200 50 9 chr4 33784885 33785348 -150503314 - LTR53 LTR ERVL -12 507 1 193 257 50 59 chr4 33786073 33786174 -150502488 - L2 LINE L2 -523 2791 2692 1910 155 0 7 chr4 33786577 33786881 -150501781 - AluSx SINE Alu -10 302 1 1922 165 129 5 chr4 33788065 33788446 -150500216 - MSTA LTR MaLR 0 428 1 332 325 57 45 chr4 33788528 33788685 -150499977 - MLT1K LTR MaLR -368 220 62 22 0 0 0 chr4 33788946 33788968 -150499694 + AT_rich Low_complexity Low_complexity 1 22 0 895 293 44 20 chr4 33788968 33789471 -150499191 + L2 LINE L2 2770 3280 -33 186 103 0 0 chr4 33789528 33789557 -150499105 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 1854 160 10 0 chr4 33789658 33789965 -150498697 + AluSx SINE Alu 1 310 -2 2172 144 3 29 chr4 33791819 33792193 -150496469 - THE1B LTR MaLR 0 364 1 2312 236 8 8 chr4 33792324 33792844 -150495818 - MLT2B1 LTR ERVL 0 520 1 464 324 11 16 chr4 33794048 33794230 -150494432 + MIR SINE MIR 80 260 -2 1475 256 124 4 chr4 33794528 33794978 -150493684 - MLT1D LTR MaLR 0 505 2 891 278 48 11 chr4 33795531 33795804 -150492858 - LTR67 LTR ERVL -2 555 273 231 300 36 55 chr4 33796775 33796885 -150491777 + MIR SINE MIR 86 193 -69 1541 214 63 24 chr4 33797271 33797650 -150491012 - MSTD LTR MaLR -2 394 1 28 48 0 0 chr4 33797894 33797936 -150490726 + AT_rich Low_complexity Low_complexity 1 42 0 23 68 0 0 chr4 33798016 33798060 -150490602 + AT_rich Low_complexity Low_complexity 1 44 0 198 390 138 5 chr4 33798177 33798395 -150490267 + MIR SINE MIR 13 259 -3 29 0 0 0 chr4 33798397 33798426 -150490236 + AT_rich Low_complexity Low_complexity 1 29 0 345 320 22 31 chr4 33799135 33799362 -150489300 + GA-rich Low_complexity Low_complexity 1 225 0 269 194 0 28 chr4 33799614 33799686 -150488976 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 23 33 0 0 chr4 33800231 33800261 -150488401 + AT_rich Low_complexity Low_complexity 1 30 0 250 371 28 28 chr4 33800441 33800584 -150488078 - MIR SINE MIR -115 147 5 2435 181 7 5 chr4 33802181 33802618 -150486044 - MER44D DNA MER2_type -36 569 77 22 56 0 0 chr4 33803216 33803252 -150485410 + AT_rich Low_complexity Low_complexity 1 36 0 1422 195 82 22 chr4 33803382 33803700 -150484962 - L1MC1 LINE L1 0 6333 5997 268 114 66 0 chr4 33803719 33803779 -150484883 - Alu SINE Alu -11 291 247 216 0 0 0 chr4 33803828 33803852 -150484810 + (TA)n Simple_repeat Simple_repeat 2 25 0 801 212 0 54 chr4 33803864 33804048 -150484614 - AluJb SINE Alu -30 282 109 831 172 89 17 chr4 33804161 33804341 -150484321 - L1MC1 LINE L1 -727 5606 5414 * 2128 230 77 4 chr4 33804327 33804848 -150483814 - L1MCa LINE L1 -5839 587 29 209 189 0 0 chr4 33805312 33805349 -150483313 + (TCTA)n Simple_repeat Simple_repeat 1 37 0 1313 215 85 74 chr4 33805796 33806257 -150482405 - MLT1C LTR MaLR 0 467 2 447 362 31 18 chr4 33807951 33808175 -150480487 + L2 LINE L2 2699 2925 -389 881 265 88 20 chr4 33808308 33808614 -150480048 + LTR16A1 LTR ERVL 109 435 -22 345 387 47 7 chr4 33808638 33808917 -150479745 + ERVL LTR ERVL 1 290 -4706 1345 246 86 25 chr4 33809017 33809412 -150479250 - LTR52 LTR ERVL 0 421 3 1332 364 45 35 chr4 33809468 33810236 -150478426 + ERVL LTR ERVL 477 1259 -3737 640 229 60 60 chr4 33810236 33810454 -150478208 - MER20 DNA MER1_type -1 218 1 1332 364 45 35 chr4 33810454 33810684 -150477978 + ERVL LTR ERVL 1259 1485 -3511 731 313 52 48 chr4 33810690 33811191 -150477471 + ERVL LTR ERVL 1589 2091 -2905 464 328 58 6 chr4 33811253 33811427 -150477235 + ERVL LTR ERVL 2225 2407 -3357 388 368 33 4 chr4 33811595 33811912 -150476750 + ERVL LTR ERVL 2446 2777 -2219 639 349 80 27 chr4 33812125 33812603 -150476059 + ERVL LTR ERVL 3055 3557 -2207 1277 169 9 0 chr4 33812771 33812984 -150475678 - AluSg/x SINE Alu -17 295 81 2372 119 14 3 chr4 33813083 33813443 -150475219 + THE1B LTR MaLR 1 364 0 8512 127 34 37 chr4 33813443 33814859 -150473803 + THE1B-int LTR MaLR 1 1411 -169 982 147 20 10 chr4 33815192 33815396 -150473266 + THE1B-int LTR MaLR 1375 1580 0 2401 120 0 11 chr4 33815396 33815762 -150472900 + THE1B LTR MaLR 1 362 -2 778 216 6 28 chr4 33815794 33815970 -150472692 - AluJo SINE Alu -16 296 125 370 283 14 0 chr4 33815975 33816113 -150472549 + ERVL LTR ERVL 3878 4017 -1747 412 267 60 84 chr4 33816919 33817204 -150471458 + LTR16A1 LTR ERVL 1 278 -179 1010 65 30 6 chr4 33817997 33818165 -150470497 + (GAAA)n Simple_repeat Simple_repeat 4 175 0 3095 158 19 23 chr4 33818711 33819331 -150469331 + L1MA7 LINE L1 5672 6289 -2 2358 237 36 26 chr4 33819647 33820251 -150468411 + MER90 LTR ERV1 1 610 -4 1535 84 21 8 chr4 33821539 33821776 -150466886 + L1PA5 LINE L1 5904 6143 -11 24 0 0 0 chr4 33821868 33821892 -150466770 + AT_rich Low_complexity Low_complexity 1 24 0 1560 194 15 56 chr4 33822451 33822792 -150465870 - MER7A DNA MER2_type -1 345 21 596 211 16 0 chr4 33822790 33822918 -150465744 + MER39 LTR ERV1 557 686 -21 * 378 0 0 0 chr4 33823143 33823185 -150465477 + (CA)n Simple_repeat Simple_repeat 2 43 0 685 294 76 61 chr4 33824127 33824171 -150464491 - L2 LINE L2 -27 3286 3244 2275 162 30 16 chr4 33824171 33824610 -150464052 + MER65A LTR ERV1 1 445 0 685 294 76 61 chr4 33824610 33825153 -150463509 - L2 LINE L2 -69 3244 2687 195 100 0 0 chr4 33825153 33825183 -150463479 + (TA)n Simple_repeat Simple_repeat 2 31 0 722 325 77 6 chr4 33825840 33826179 -150462483 - L2 LINE L2 -613 2701 2339 189 314 220 25 chr4 33826287 33826405 -150462257 - L2 LINE L2 0 3313 3173 383 356 151 28 chr4 33826697 33827129 -150461533 - L2 LINE L2 -466 2848 2364 254 279 0 0 chr4 33827736 33827804 -150460858 + A-rich Low_complexity Low_complexity 1 68 0 337 234 203 16 chr4 33829505 33829633 -150459029 + MLT1J LTR MaLR 33 184 -327 3409 266 40 45 chr4 33829680 33831128 -150457534 - L1MCb LINE L1 -4851 1194 3 297 323 24 16 chr4 33831323 33831447 -150457215 + MER5A DNA MER1_type 34 158 -31 291 200 0 47 chr4 33831944 33832029 -150456633 + GA-rich Low_complexity Low_complexity 3 83 0 282 143 0 0 chr4 33832253 33832302 -150456360 + (TG)n Simple_repeat Simple_repeat 2 50 0 1837 93 30 36 chr4 33832741 33833042 -150455620 - THE1C LTR MaLR -76 299 1 230 314 108 10 chr4 33833067 33833169 -150455493 - MLT1I LTR MaLR -197 212 101 398 271 77 45 chr4 33833291 33833538 -150455124 - L1ME LINE L1 -648 5516 5262 1465 172 35 56 chr4 33833709 33834028 -150454634 + AluJo SINE Alu 1 312 0 762 296 107 26 chr4 33834364 33835376 -150453286 - L1ME LINE L1 -1644 4502 3409 226 230 130 25 chr4 33835695 33835856 -150452806 - L1ME LINE L1 -3191 2955 2778 326 301 7 37 chr4 33835897 33836033 -150452629 + MER94 DNA DNA 1 132 -2 238 222 0 0 chr4 33836066 33836120 -150452542 - L1ME LINE L1 -3447 2699 2646 499 321 38 5 chr4 33836491 33836675 -150451987 + LTR33 LTR ERVL 32 221 -300 1478 173 21 25 chr4 33837282 33837588 -150451074 + AluJo SINE Alu 1 305 0 329 344 133 11 chr4 33838561 33838741 -150449921 + MIR3 SINE MIR 1 202 -6 230 258 75 69 chr4 33839171 33839330 -150449332 + MLT1J2 LTR MaLR 264 423 -27 241 216 420 0 chr4 33839885 33839973 -150448689 + L2 LINE L2 3181 3305 -8 224 30 30 0 chr4 33840445 33840478 -150448184 + (TG)n Simple_repeat Simple_repeat 2 35 0 1750 191 18 6 chr4 33840505 33840840 -150447822 - MER44D DNA MER2_type 0 609 1 498 305 12 6 chr4 33842380 33842544 -150446118 - MER69A DNA AcHobo -7 170 6 308 190 9 103 chr4 33843919 33844035 -150444627 - MLT1J1 LTR MaLR -321 125 21 295 245 32 21 chr4 33844069 33844163 -150444499 - MLT1G LTR MaLR 0 590 496 299 132 0 0 chr4 33844185 33844238 -150444424 - LTR19A LTR ERV1 0 486 434 303 307 38 46 chr4 33844398 33844636 -150444026 - L1MC5 LINE L1 -384 7577 7342 364 255 94 52 chr4 33844747 33845014 -150443648 - MLT1J LTR MaLR -2 509 232 310 143 0 0 chr4 33845314 33845363 -150443299 + MADE1 DNA Mariner 32 80 0 22 35 0 0 chr4 33845613 33845642 -150443020 + AT_rich Low_complexity Low_complexity 1 29 0 246 250 0 0 chr4 33846553 33846613 -150442049 + (TA)n Simple_repeat Simple_repeat 2 61 0 317 194 52 49 chr4 33846724 33847087 -150441575 + L1MA9 LINE L1 5341 5701 -611 2009 112 11 3 chr4 33847087 33847374 -150441288 - AluSc SINE Alu -20 289 1 317 194 52 49 chr4 33847374 33847830 -150440832 + L1MA9 LINE L1 5701 6276 -36 2349 74 0 13 chr4 33848657 33848969 -150439693 - AluY SINE Alu -3 308 1 206 125 0 25 chr4 33849750 33849790 -150438872 + (TA)n Simple_repeat Simple_repeat 2 40 0 270 233 0 27 chr4 33849820 33849893 -150438769 + (TA)n Simple_repeat Simple_repeat 1 71 0 23 33 0 0 chr4 33850176 33850206 -150438456 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr4 33851461 33851482 -150437180 + (T)n Simple_repeat Simple_repeat 1 21 0 21 57 0 0 chr4 33852179 33852214 -150436448 + AT_rich Low_complexity Low_complexity 1 35 0 2032 178 90 2 chr4 33852222 33852644 -150436018 - L1PB4 LINE L1 -17 6139 5681 616 206 67 67 chr4 33852893 33853073 -150435589 + MLT1D LTR MaLR 12 191 -314 420 195 0 0 chr4 33853331 33853413 -150435249 - AluJ/FRAM SINE Alu -10 302 221 1847 173 3 3 chr4 33853551 33853880 -150434782 + L1PA15 LINE L1 5835 6163 -2 992 222 28 4 chr4 33854102 33854350 -150434312 + MER63 DNA MER1_type 809 1062 0 30 97 0 0 chr4 33854558 33854651 -150434011 + AT_rich Low_complexity Low_complexity 1 93 0 1317 259 37 12 chr4 33855170 33855572 -150433090 - L1ME1 LINE L1 -207 5959 5548 2973 90 5 0 chr4 33855575 33855985 -150432677 - L1PA7 LINE L1 0 6154 5743 6195 94 2 1 chr4 33855985 33856858 -150431804 + L1P LINE L1 1652 2525 -3621 265 301 27 6 chr4 33856855 33856973 -150431689 - L1ME1 LINE L1 -607 5557 5436 * 1306 258 164 48 chr4 33857080 33857473 -150431189 - L1ME1 LINE L1 -735 5427 5081 276 30 0 0 chr4 33857473 33857506 -150431156 + (TG)n Simple_repeat Simple_repeat 2 34 0 1306 258 164 48 chr4 33857506 33858097 -150430565 - L1ME1 LINE L1 -1081 5081 4324 23 86 0 0 chr4 33858225 33858283 -150430379 + AT_rich Low_complexity Low_complexity 1 58 0 1109 184 81 16 chr4 33858894 33859153 -150429509 + MER39 LTR ERV1 3 234 -419 1338 104 56 30 chr4 33859154 33859385 -150429277 + MER39 LTR ERV1 340 576 -131 933 247 83 106 chr4 33909400 33909927 -150378735 + MLT1E2 LTR MaLR 15 529 -97 240 86 0 0 chr4 33910051 33910086 -150378576 + (TG)n Simple_repeat Simple_repeat 2 36 0 1313 250 67 45 chr4 33910258 33910722 -150377940 - MLT1D LTR MaLR -27 478 5 934 331 22 12 chr4 33911596 33911945 -150376717 + MLT1G LTR MaLR 212 584 -11 729 147 62 0 chr4 33912436 33912565 -150376097 + FRAM SINE Alu 28 164 -12 26 0 0 0 chr4 33912693 33912719 -150375943 + AT_rich Low_complexity Low_complexity 1 26 0 200 372 124 13 chr4 33912849 33913083 -150375579 + L2 LINE L2 2970 3229 -84 22 0 0 0 chr4 33914111 33914133 -150374529 + AT_rich Low_complexity Low_complexity 1 22 0 33 0 0 0 chr4 33914234 33914267 -150374395 + AT_rich Low_complexity Low_complexity 1 33 0 362 254 17 51 chr4 33914615 33914733 -150373929 + MIR SINE MIR 133 246 -16 23 20 8 0 chr4 33915248 33915318 -150373344 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr4 33916742 33916765 -150371897 + AT_rich Low_complexity Low_complexity 1 23 0 187 316 110 15 chr4 33917043 33917179 -150371483 + MIR SINE MIR 2 150 -112 392 300 75 50 chr4 33917720 33917880 -150370782 - L2 LINE L2 0 3272 3109 731 253 50 84 chr4 33918277 33918637 -150370025 - L1ME1 LINE L1 -36 6130 5780 1209 83 30 0 chr4 33919285 33919453 -150369209 - L1PA7 LINE L1 -1 6153 5981 7501 85 0 23 chr4 33919453 33920960 -150367702 - L1PA7 LINE L1 -398 5756 4290 2145 116 3 3 chr4 33921321 33921613 -150367049 + AluSc SINE Alu 1 292 -17 188 306 41 0 chr4 33921855 33921904 -150366758 - L2 LINE L2 -269 3044 2994 1036 254 93 48 chr4 33924918 33925448 -150363214 - MLT1F1 LTR MaLR 0 567 13 192 356 75 29 chr4 33926794 33926968 -150361694 + MER5A DNA MER1_type 7 188 -1 1882 159 122 8 chr4 33927039 33927423 -150361239 - MSTA LTR MaLR 0 428 1 408 279 155 18 chr4 33927512 33927731 -150360931 - MIR SINE MIR -12 250 2 271 302 36 107 chr4 33928482 33928790 -150359872 + MLT1L LTR MaLR 167 452 -163 29 0 0 0 chr4 33928913 33928942 -150359720 + AT_rich Low_complexity Low_complexity 1 29 0 218 49 0 73 chr4 33929831 33929872 -150358790 + (A)n Simple_repeat Simple_repeat 1 38 0 22 35 0 0 chr4 33929976 33930005 -150358657 + AT_rich Low_complexity Low_complexity 1 29 0 2169 128 0 0 chr4 33931417 33931713 -150356949 + AluSg SINE Alu 1 296 -14 929 203 72 56 chr4 33932084 33932335 -150356327 - LTR8A LTR ERV1 0 727 473 325 167 97 14 chr4 33932438 33932510 -150356152 - LTR8 LTR ERV1 -613 78 1 1981 141 0 3 chr4 33932630 33932961 -150355701 - AluSx SINE Alu 0 312 1 23 33 0 0 chr4 33933291 33933321 -150355341 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr4 33934362 33934392 -150354270 + AT_rich Low_complexity Low_complexity 1 30 0 242 294 199 35 chr4 33934505 33934706 -150353956 + MIR SINE MIR 23 256 -6 531 270 131 36 chr4 33934783 33935005 -150353657 - MIR SINE MIR -12 250 8 326 226 78 9 chr4 33935290 33935405 -150353257 - L1MD3 LINE L1 -10 7985 7863 1961 139 152 11 chr4 33935560 33935935 -150352727 + MSTA LTR MaLR 1 428 0 2077 121 7 0 chr4 33935948 33936237 -150352425 + AluSx SINE Alu 3 293 -19 1610 238 87 2 chr4 33936254 33936703 -150351959 - L1MD3 LINE L1 -160 7835 7349 405 204 10 13 chr4 33936705 33936824 -150351838 - L1MD3 LINE L1 -847 7015 6849 838 272 145 53 chr4 33937870 33938469 -150350193 + MLT1E1 LTR MaLR 1 654 0 227 200 56 56 chr4 33938770 33938860 -150349802 - MLT1J1 LTR MaLR -286 160 71 189 269 77 0 chr4 33938931 33938983 -150349679 - L2 LINE L2 -68 3245 3190 874 347 69 27 chr4 33940046 33940599 -150348063 + L1M2c LINE L1 7 582 -6207 2145 247 24 28 chr4 33941100 33941772 -150346890 + L1M2c LINE L1 1481 2149 -4640 * 2749 117 22 0 chr4 33941769 33942179 -150346483 + L1MA6 LINE L1 5519 5937 -363 225 0 0 0 chr4 33942179 33942204 -150346458 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 297 0 0 0 chr4 33942203 33942236 -150346426 + (GA)n Simple_repeat Simple_repeat 2 34 0 213 108 0 0 chr4 33942647 33942684 -150345978 + (TA)n Simple_repeat Simple_repeat 2 38 0 961 242 74 17 chr4 33942735 33943018 -150345644 + L1MA6 LINE L1 5980 6282 -18 816 118 0 15 chr4 33943018 33943154 -150345508 + L1PB1 LINE L1 6018 6151 0 961 242 74 17 chr4 33943154 33943167 -150345495 + L1MA6 LINE L1 6282 6293 -7 28 61 0 0 chr4 33943210 33943259 -150345403 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr4 33943456 33943480 -150345182 + AT_rich Low_complexity Low_complexity 1 24 0 1999 130 53 28 chr4 33946084 33946439 -150342223 - THE1B LTR MaLR 0 364 1 10298 159 40 13 chr4 33946993 33947171 -150341491 + Tigger1 DNA MER2_type 1 173 -2245 198 0 0 0 chr4 33947171 33947193 -150341469 + (TTA)n Simple_repeat Simple_repeat 3 24 0 10298 159 40 13 chr4 33947193 33948867 -150339795 + Tigger1 DNA MER2_type 173 1903 -515 267 333 31 0 chr4 33948867 33948963 -150339699 + MER5A DNA MER1_type 14 112 -77 643 302 79 34 chr4 33949127 33949418 -150339244 - L2 LINE L2 -43 3270 2967 477 349 107 5 chr4 33949527 33949742 -150338920 - MIR SINE MIR -18 244 8 211 341 8 45 chr4 33949956 33950088 -150338574 - MER5A DNA MER1_type -28 161 35 194 313 94 42 chr4 33950015 33950111 -150338551 + MER5A DNA MER1_type 88 188 -1 * 21 0 0 0 chr4 33951167 33951188 -150337474 + AT_rich Low_complexity Low_complexity 1 21 0 265 340 58 0 chr4 33953829 33953932 -150334730 + L2 LINE L2 3163 3271 -1 23 0 0 0 chr4 33954193 33954216 -150334446 + AT_rich Low_complexity Low_complexity 1 23 0 222 327 53 44 chr4 33955240 33955353 -150333309 + L3 LINE CR1 1429 1542 -35 201 39 0 0 chr4 33956218 33956244 -150332418 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2244 57 0 4 chr4 33957192 33957505 -150331157 + AluSc SINE Alu 1 312 0 368 227 13 0 chr4 33957546 33957621 -150331041 - LTR16C LTR ERVL -4 487 412 27 0 0 0 chr4 33958212 33958239 -150330423 + AT_rich Low_complexity Low_complexity 1 27 0 2096 136 3 0 chr4 33958250 33958552 -150330110 + AluSx SINE Alu 1 303 -9 22 70 0 0 chr4 33958593 33958636 -150330026 + AT_rich Low_complexity Low_complexity 1 43 0 27 29 0 0 chr4 33958896 33958930 -150329732 + AT_rich Low_complexity Low_complexity 1 34 0 340 328 9 0 chr4 33958972 33959088 -150329574 - MIR SINE MIR 0 262 146 321 342 102 30 chr4 33959143 33959535 -150329127 + L2 LINE L2 2749 3154 -159 733 277 9 48 chr4 33959565 33959796 -150328866 + MER58A DNA MER1_type 3 224 0 614 306 65 46 chr4 33961674 33962046 -150326616 + L2 LINE L2 2917 3295 -18 22 0 0 0 chr4 33962172 33962194 -150326468 + AT_rich Low_complexity Low_complexity 1 22 0 1793 83 0 42 chr4 33962339 33962604 -150326058 + L1PA15 LINE L1 5904 6157 -8 1608 181 7 10 chr4 33962941 33963240 -150325422 - AluJo SINE Alu -14 298 1 572 294 36 44 chr4 33963615 33963863 -150324799 - L2 LINE L2 0 3313 3068 240 403 13 27 chr4 33963900 33964049 -150324613 - L2 LINE L2 -3133 181 35 572 133 8 0 chr4 33964665 33964785 -150323877 + (TA)n Simple_repeat Simple_repeat 2 122 0 1877 178 2 63 chr4 33965072 33965487 -150323175 - MLT1B LTR MaLR 0 390 1 323 304 108 6 chr4 33965562 33965720 -150322942 - MIR SINE MIR -11 251 78 25 31 0 0 chr4 33966117 33966149 -150322513 + AT_rich Low_complexity Low_complexity 1 32 0 228 214 0 0 chr4 33966204 33966246 -150322416 + GA-rich Low_complexity Low_complexity 2 43 0 21 36 0 0 chr4 33968169 33968197 -150320465 + AT_rich Low_complexity Low_complexity 1 28 0 1576 254 22 51 chr4 33968565 33969152 -150319510 - L1ME1 LINE L1 -5 6161 5592 432 250 15 0 chr4 33969157 33969289 -150319373 - L1MA10 LINE L1 -21 6313 6180 235 227 15 15 chr4 33969295 33969361 -150319301 + (ATG)n Simple_repeat Simple_repeat 2 67 0 9095 205 33 38 chr4 33969368 33971770 -150316892 - L1MB1 LINE L1 -26 6163 3750 1750 184 47 11 chr4 33971770 33972129 -150316533 - THE1C LTR MaLR -3 372 1 9095 205 33 38 chr4 33972129 33972362 -150316300 - L1MB1 LINE L1 -2439 3750 3517 1459 192 35 21 chr4 33972362 33972648 -150316014 + AluJo SINE Alu 1 290 -22 9095 205 33 38 chr4 33972648 33973148 -150315514 - L1MB1 LINE L1 -2672 3517 3041 274 355 39 55 chr4 33973286 33973542 -150315120 - MIR SINE MIR 0 262 11 25 31 0 0 chr4 33973581 33973613 -150315049 + AT_rich Low_complexity Low_complexity 1 32 0 1364 194 35 1 chr4 33973805 33974129 -150314533 - MLT2C2 LTR ERVL -48 349 1 1333 120 34 0 chr4 33975025 33975233 -150313429 + L1PA10 LINE L1 5951 6165 -3 216 196 143 0 chr4 33975347 33975403 -150313259 + MIR SINE MIR 94 157 -105 21 57 0 0 chr4 33976353 33976388 -150312274 + AT_rich Low_complexity Low_complexity 1 35 0 618 307 94 12 chr4 33977141 33977395 -150311267 + L2 LINE L2 2464 2738 -576 394 346 49 45 chr4 33977409 33977675 -150310987 + L2 LINE L2 3047 3313 0 407 340 90 9 chr4 33977817 33978029 -150310633 - MIR SINE MIR -11 251 23 387 98 0 0 chr4 33978685 33978746 -150309916 + (TG)n Simple_repeat Simple_repeat 1 61 0 261 0 0 0 chr4 33979236 33979265 -150309397 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 188 290 110 50 chr4 33979944 33980044 -150308618 - L2 LINE L2 -276 3037 2932 21 82 0 0 chr4 33980305 33980354 -150308308 + AT_rich Low_complexity Low_complexity 1 49 0 321 205 391 0 chr4 33980523 33980743 -150307919 + L1MD3 LINE L1 6959 7097 -688 454 281 9 0 chr4 33980743 33980857 -150307805 + MLT1F1 LTR MaLR 17 131 -436 1989 240 32 14 chr4 33980859 33981418 -150307244 + L1MD3 LINE L1 7410 7978 -17 360 341 50 17 chr4 33981671 33981850 -150306812 + MLT1E LTR MaLR 1 185 -408 295 167 14 14 chr4 33981863 33981935 -150306727 + CT-rich Low_complexity Low_complexity 6 77 0 24 53 0 0 chr4 33982549 33982587 -150306075 + AT_rich Low_complexity Low_complexity 1 38 0 555 189 69 62 chr4 33983992 33984189 -150304473 + MIR SINE MIR 1 200 -62 21 57 0 0 chr4 33984246 33984281 -150304381 + AT_rich Low_complexity Low_complexity 1 35 0 306 267 78 35 chr4 33984378 33984494 -150304168 - L1ME4a LINE L1 -233 5888 5768 248 305 141 8 chr4 33984514 33984642 -150304020 + MIR SINE MIR 118 262 0 21 0 0 0 chr4 33985185 33985206 -150303456 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 33985521 33985542 -150303120 + AT_rich Low_complexity Low_complexity 1 21 0 245 311 74 27 chr4 33986194 33986222 -150302440 - MLT1K LTR MaLR -164 424 399 2247 101 0 0 chr4 33986222 33986519 -150302143 - AluSg1 SINE Alu -12 297 1 245 311 74 27 chr4 33986519 33986638 -150302024 - MLT1K LTR MaLR -189 399 270 823 125 7 28 chr4 33986764 33986908 -150301754 + MLT1A1 LTR MaLR 11 151 -214 969 256 133 67 chr4 33986962 33988009 -150300653 + L1M4 LINE L1 4492 5607 -577 1585 128 15 4 chr4 33988009 33988275 -150300387 + L1PA13 LINE L1 5888 6156 -7 622 284 48 14 chr4 33988351 33988702 -150299960 + L1ME3A LINE L1 5469 5881 -289 218 169 17 34 chr4 33988853 33988912 -150299750 + CT-rich Low_complexity Low_complexity 2 59 0 415 194 58 22 chr4 33989028 33989167 -150299495 - L1MC2 LINE L1 -1 6343 6200 1407 181 10 51 chr4 33989170 33989463 -150299199 + MSTB LTR MaLR 3 283 -143 644 179 0 8 chr4 33989463 33989580 -150299082 + AluJ SINE Alu 1 116 -186 496 195 0 0 chr4 33989580 33989667 -150298995 + AluJ SINE Alu 168 254 -58 5091 46 3 3 chr4 33989801 33990434 -150298228 + L1PA5 LINE L1 5517 6149 -5 224 317 40 29 chr4 33991445 33991576 -150297086 - MIR SINE MIR -65 143 28 376 341 7 7 chr4 33991599 33991737 -150296925 - MIR SINE MIR -10 252 115 21 36 0 0 chr4 33992012 33992040 -150296622 + AT_rich Low_complexity Low_complexity 1 28 0 251 326 0 21 chr4 33992135 33992230 -150296432 + MER5A DNA MER1_type 11 103 -86 22 35 0 0 chr4 33992351 33992380 -150296282 + AT_rich Low_complexity Low_complexity 1 29 0 2374 67 0 10 chr4 33992735 33993047 -150295615 - AluY SINE Alu -2 309 1 22 0 0 0 chr4 33995302 33995324 -150293338 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 33996010 33996035 -150292627 + AT_rich Low_complexity Low_complexity 1 25 0 213 319 0 53 chr4 33996538 33996632 -150292030 + MIR SINE MIR 162 250 -12 67 42 0 0 chr4 33997078 33997173 -150291489 + AT_rich Low_complexity Low_complexity 1 95 0 265 331 53 30 chr4 33997671 33997804 -150290858 + MIR SINE MIR 1 136 -126 31 26 0 0 chr4 33998136 33998174 -150290488 + AT_rich Low_complexity Low_complexity 1 38 0 22 70 0 0 chr4 33998469 33998512 -150290150 + AT_rich Low_complexity Low_complexity 1 43 0 264 234 16 0 chr4 33998641 33998705 -150289957 + CT-rich Low_complexity Low_complexity 4 68 0 383 340 28 28 chr4 33998706 33998918 -150289744 - HAL1b LINE L1 -861 487 276 22 0 0 0 chr4 33999412 33999434 -150289228 + AT_rich Low_complexity Low_complexity 1 22 0 256 254 45 0 chr4 33999742 33999809 -150288853 - HAL1 LINE L1 -829 1678 1609 329 275 94 7 chr4 33999811 33999960 -150288702 - MLT1I LTR MaLR 0 590 429 2074 144 0 0 chr4 34001117 34001429 -150287233 + AluSx SINE Alu 1 312 0 30302 117 13 62 chr4 34001968 34008435 -150280227 + L1PA7 LINE L1 12 6143 -11 198 0 0 0 chr4 34008438 34008460 -150280202 + (TTAAA)n Simple_repeat Simple_repeat 4 25 0 988 312 73 38 chr4 34008527 34009078 -150279584 + L2 LINE L2 2381 2950 -364 1375 201 17 24 chr4 34010723 34011017 -150277645 + AluJb SINE Alu 3 294 -18 222 150 0 0 chr4 34011369 34011409 -150277253 + (ATG)n Simple_repeat Simple_repeat 2 41 0 446 273 0 0 chr4 34011414 34011513 -150277149 - MLT1E LTR MaLR -434 159 61 697 217 0 0 chr4 34012193 34012331 -150276331 - AluJb SINE Alu -19 293 156 1382 254 83 48 chr4 34013090 34013822 -150274840 + Zaphod DNA AcHobo 217 974 -3057 985 252 122 3 chr4 34013852 34014221 -150274441 + Zaphod DNA AcHobo 3611 4023 -8 465 278 133 44 chr4 34015784 34015964 -150272698 - MIR SINE MIR -27 235 40 208 237 0 0 chr4 34015975 34016013 -150272649 + polypurine Low_complexity Low_complexity 5 42 0 225 372 74 25 chr4 34016338 34016459 -150272203 + L2 LINE L2 3134 3260 -12 22 0 0 0 chr4 34016470 34016492 -150272170 + AT_rich Low_complexity Low_complexity 1 22 0 322 315 0 37 chr4 34016579 34016687 -150271975 - L2 LINE L2 0 3272 3169 781 293 34 16 chr4 34017662 34017983 -150270679 + L1ME4a LINE L1 5583 5909 -212 391 305 50 47 chr4 34018094 34018472 -150270190 - MLT1I LTR MaLR -12 397 22 1044 279 33 89 chr4 34018831 34019405 -150269257 - MER34 LTR ERV1 0 542 1 709 227 0 0 chr4 34019522 34019654 -150269008 + FLAM_C SINE Alu 2 133 0 426 115 39 0 chr4 34019662 34019740 -150268922 + AluS SINE Alu 232 312 0 781 191 0 0 chr4 34019961 34020092 -150268570 + FLAM_A SINE Alu 6 136 -6 209 54 0 89 chr4 34020117 34020173 -150268489 + (TAA)n Simple_repeat Simple_repeat 1 51 0 435 307 199 21 chr4 34020400 34020664 -150267998 + L2 LINE L2 2688 3000 -313 225 122 24 0 chr4 34020931 34020972 -150267690 - L1PBa LINE L1 -4410 2453 2412 425 303 16 0 chr4 34021241 34021363 -150267299 + MER58A DNA MER1_type 1 124 0 386 264 22 0 chr4 34021402 34021493 -150267169 + MER58A DNA MER1_type 127 219 -5 189 0 0 0 chr4 34021541 34021562 -150267100 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 207 191 48 0 chr4 34021710 34021752 -150266910 + L2 LINE L2 3219 3262 -10 742 237 51 0 chr4 34022812 34022989 -150265673 - MER5A DNA MER1_type -3 186 1 809 264 57 4 chr4 34023689 34023916 -150264746 + MER8 DNA MER2_type 1 239 0 1891 141 17 0 chr4 34024389 34024687 -150263975 + AluSx SINE Alu 4 306 -6 205 83 0 28 chr4 34024944 34024980 -150263682 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 24 53 0 0 chr4 34025024 34025062 -150263600 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr4 34025602 34025630 -150263032 + AT_rich Low_complexity Low_complexity 1 28 0 587 241 5 98 chr4 34025709 34025785 -150262877 + MER20 DNA MER1_type 24 106 -113 2446 84 6 0 chr4 34025785 34026096 -150262566 + AluSp SINE Alu 1 313 0 587 241 5 98 chr4 34026096 34026222 -150262440 + MER20 DNA MER1_type 106 207 -12 342 111 12 25 chr4 34027269 34027350 -150261312 + (TA)n Simple_repeat Simple_repeat 1 80 0 226 178 0 0 chr4 34027374 34027419 -150261243 - LTR66 LTR ERVL -172 438 394 189 154 0 0 chr4 34027419 34027458 -150261204 + (CATA)n Simple_repeat Simple_repeat 2 40 0 198 0 0 0 chr4 34027533 34027555 -150261107 + (TG)n Simple_repeat Simple_repeat 1 22 0 279 189 22 22 chr4 34027574 34027664 -150260998 + (TATAA)n Simple_repeat Simple_repeat 2 91 0 205 135 56 0 chr4 34027664 34027753 -150260909 + (TA)n Simple_repeat Simple_repeat 1 94 0 27 0 0 0 chr4 34027831 34027858 -150260804 + AT_rich Low_complexity Low_complexity 1 27 0 1815 138 11 0 chr4 34027880 34028148 -150260514 + AluSx SINE Alu 27 297 -15 2033 140 39 39 chr4 34028157 34028521 -150260141 + THE1B LTR MaLR 1 364 0 9098 120 81 36 chr4 34028521 34030033 -150258629 + THE1B-int LTR MaLR 1 1580 0 1956 126 72 31 chr4 34030033 34030382 -150258280 + THE1B LTR MaLR 1 363 -1 1415 208 15 0 chr4 34030383 34030657 -150258005 - AluJb SINE Alu -34 278 1 1219 144 0 16 chr4 34030869 34031085 -150257577 - AluSg/x SINE Alu 0 313 101 1527 231 35 3 chr4 34031597 34031965 -150256697 + MLT2C2 LTR ERVL 5 384 -80 228 174 0 0 chr4 34032013 34032059 -150256603 - LTR66 LTR ERVL -171 439 394 213 39 0 0 chr4 34032083 34032109 -150256553 + (GA)n Simple_repeat Simple_repeat 1 26 0 265 103 0 0 chr4 34032116 34032155 -150256507 + MLT2C2 LTR ERVL 359 397 0 1280 311 54 69 chr4 34034292 34035279 -150253383 - L2 LINE L2 0 3313 2328 23 33 0 0 chr4 34035295 34035325 -150253337 + AT_rich Low_complexity Low_complexity 1 30 0 1634 115 22 103 chr4 34035328 34035671 -150252991 + AluYb8 SINE Alu 1 318 0 592 359 48 19 chr4 34035875 34036246 -150252416 + LTR16A LTR ERVL 52 433 -17 225 279 33 0 chr4 34037209 34037270 -150251392 + MLT1D LTR MaLR 5 67 -438 296 220 0 22 chr4 34037272 34037363 -150251299 - L1MC4 LINE L1 -1339 6703 6615 231 283 0 22 chr4 34037284 34037376 -150251286 + L1MC4 LINE L1 6614 6703 -1339 * 309 153 0 0 chr4 34037379 34037477 -150251185 + (TA)n Simple_repeat Simple_repeat 1 98 0 1184 289 51 12 chr4 34037486 34037895 -150250767 + MLT1D LTR MaLR 81 505 0 25 31 0 0 chr4 34037981 34038013 -150250649 + AT_rich Low_complexity Low_complexity 1 32 0 5158 159 34 4 chr4 34038016 34039225 -150249437 - L1PA16 LINE L1 -9 6157 4912 327 255 7 28 chr4 34039220 34039365 -150249297 + L1P LINE L1 3022 3163 -2983 * 262 203 0 40 chr4 34039429 34039503 -150249159 + MER57A-int LTR ERV1 857 927 -4196 317 172 0 0 chr4 34039538 34039596 -150249066 + MER34C LTR ERV1 155 212 -373 431 209 46 38 chr4 34039760 34039920 -150248742 + MER57A-int LTR ERV1 1096 1199 -3672 286 220 0 77 chr4 34039906 34039997 -150248665 + MER57A-int LTR ERV1 2721 2804 -3142 * 442 217 22 0 chr4 34040077 34040169 -150248493 + MER57A-int LTR ERV1 3247 3340 -2991 287 193 0 45 chr4 34040418 34040506 -150248156 + MER57A-int LTR ERV1 1838 1921 -3202 189 211 0 0 chr4 34040694 34040746 -150247916 + A-rich Low_complexity Low_complexity 1 52 0 5230 197 50 56 chr4 34040953 34043598 -150245064 + MER57A-int LTR ERV1 4325 7145 -392 562 169 31 39 chr4 34043598 34043728 -150244934 + LTR54B LTR ERV1 3 131 -367 496 95 0 14 chr4 34043770 34043844 -150244818 + MER57A-int LTR ERV1 7222 7294 -243 1892 154 16 3 chr4 34043870 34044182 -150244480 + MER57A-int LTR ERV1 7222 7537 0 2389 146 15 2 chr4 34044182 34044580 -150244082 + MER57A LTR ERV1 1 403 0 598 299 86 0 chr4 34044583 34044804 -150243858 - HsTC2 DNA Tc2 -394 1504 1265 268 296 41 0 chr4 34044840 34044938 -150243724 - HsTC2 DNA Tc2 -1796 102 1 27 0 0 0 chr4 34044938 34044965 -150243697 + AT_rich Low_complexity Low_complexity 1 27 0 30 0 0 0 chr4 34046103 34046133 -150242529 + AT_rich Low_complexity Low_complexity 1 30 0 1019 165 28 0 chr4 34046135 34046317 -150242345 - L1PA16 LINE L1 -11 6155 5969 1423 233 61 42 chr4 34046573 34047107 -150241555 + MER67C LTR ERV1 4 511 -3 229 148 49 16 chr4 34048306 34048367 -150240295 + (TA)n Simple_repeat Simple_repeat 1 63 0 219 69 0 0 chr4 34049750 34049779 -150238883 + (TAA)n Simple_repeat Simple_repeat 1 29 0 2162 156 5 32 chr4 34049932 34050305 -150238357 - THE1B LTR MaLR -1 363 1 282 320 206 36 chr4 34051218 34051524 -150237138 - L2 LINE L2 -10 3303 2946 595 225 67 17 chr4 34051529 34051707 -150236955 - L1M4 LINE L1 -1959 4391 4205 331 111 16 16 chr4 34051726 34051789 -150236873 + (TTCC)n Simple_repeat Simple_repeat 1 63 0 971 97 29 11 chr4 34051801 34051976 -150236686 + CT-rich Low_complexity Low_complexity 2 179 0 533 319 65 9 chr4 34051990 34052219 -150236443 - L1M4 LINE L1 -4935 1346 1105 1382 179 32 47 chr4 34052300 34052640 -150236022 + L1MA8 LINE L1 5955 6289 -2 324 267 34 27 chr4 34054389 34054535 -150234127 - L1MEc LINE L1 -4286 2110 1964 * 852 103 0 0 chr4 34054534 34054660 -150234002 - L1PA7 LINE L1 -1318 4828 4703 6722 63 7 6 chr4 34054661 34055981 -150232681 + L1PA7 LINE L1 4833 6154 0 2730 287 60 59 chr4 34056006 34057205 -150231457 - L1MEc LINE L1 -4421 1975 773 303 28 0 0 chr4 34057205 34057241 -150231421 + (TG)n Simple_repeat Simple_repeat 1 36 0 2730 287 60 59 chr4 34057241 34057864 -150230798 - L1MEc LINE L1 -5623 773 152 * 5845 134 26 43 chr4 34057854 34059015 -150229647 + L1MA3 LINE L1 5163 6305 0 1775 235 36 35 chr4 34060304 34060797 -150227865 + MLT1D LTR MaLR 1 494 -11 26 74 0 0 chr4 34062130 34062184 -150226478 + AT_rich Low_complexity Low_complexity 1 54 0 244 291 109 117 chr4 34062892 34063287 -150225375 - L2 LINE L2 0 3313 2922 184 305 25 59 chr4 34063556 34063674 -150224988 + MIR SINE MIR 34 147 -115 328 304 73 16 chr4 34064692 34064883 -150223779 + MLT1J2 LTR MaLR 26 227 -223 3713 52 8 0 chr4 34065009 34065485 -150223177 + L1PA7 LINE L1 5675 6154 0 1776 163 97 83 chr4 34065866 34066362 -150222300 - MLT1D LTR MaLR 0 505 3 207 0 0 0 chr4 34066958 34066981 -150221681 + (T)n Simple_repeat Simple_repeat 1 23 0 189 0 0 0 chr4 34067608 34067629 -150221033 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 1744 176 3 0 chr4 34068397 34068687 -150219975 + AluJb SINE Alu 9 299 -13 272 230 24 32 chr4 34069354 34069480 -150219182 + (TA)n Simple_repeat Simple_repeat 1 125 0 558 327 82 18 chr4 34069729 34070301 -150218361 - L1ME3A LINE L1 -235 5935 5327 255 208 132 47 chr4 34070561 34070667 -150217995 - L1 LINE L1 -1149 4997 4883 451 345 82 16 chr4 34070774 34071200 -150217462 - L1 LINE L1 -1354 4792 4339 226 284 68 0 chr4 34071214 34071302 -150217360 - L1 LINE L1 -1922 4224 4131 2167 119 0 0 chr4 34071431 34071733 -150216929 - AluSx SINE Alu -8 304 3 21 82 0 0 chr4 34072161 34072210 -150216452 + AT_rich Low_complexity Low_complexity 1 49 0 657 181 0 45 chr4 34072416 34072549 -150216113 + AluJb SINE Alu 1 127 -185 29 28 0 0 chr4 34072705 34072741 -150215921 + AT_rich Low_complexity Low_complexity 1 36 0 384 331 41 35 chr4 34072939 34073108 -150215554 + MER5A DNA MER1_type 20 189 0 270 338 11 43 chr4 34073108 34073278 -150215384 - MER5B DNA MER1_type -6 172 18 445 110 55 0 chr4 34073604 34073677 -150214985 + AluSq/x SINE Alu 61 137 -175 1413 164 0 0 chr4 34073677 34073897 -150214765 + AluSg/x SINE Alu 90 309 -3 808 327 93 16 chr4 34073921 34074297 -150214365 - L2 LINE L2 -2646 668 264 352 366 46 16 chr4 34074902 34075096 -150213566 + L2 LINE L2 2430 2629 -685 222 118 0 0 chr4 34075465 34075499 -150213163 + (T)n Simple_repeat Simple_repeat 1 34 0 1151 231 80 41 chr4 34076844 34077324 -150211338 - MER67C LTR ERV1 -37 477 15 6007 150 47 19 chr4 34077386 34078583 -150210079 + Tigger3b DNA MER2_type 1 1230 -1 216 0 0 0 chr4 34078860 34078884 -150209778 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 591 213 41 77 chr4 34080067 34080236 -150208426 + MER20 DNA MER1_type 56 218 -1 264 138 0 55 chr4 34081423 34081532 -150207130 + (GA)n Simple_repeat Simple_repeat 2 104 0 283 301 62 26 chr4 34083391 34083504 -150205158 - MLT1E LTR MaLR -455 138 22 367 351 65 103 chr4 34084350 34084388 -150204274 - HAL1 LINE L1 -1832 675 637 402 21 0 0 chr4 34084388 34084435 -150204227 + (TG)n Simple_repeat Simple_repeat 2 48 0 367 351 65 103 chr4 34084435 34084729 -150203933 - HAL1 LINE L1 -1870 637 333 2181 151 27 24 chr4 34084729 34085141 -150203521 - L1MA6 LINE L1 0 6300 5888 367 351 65 103 chr4 34085141 34085225 -150203437 - HAL1 LINE L1 -2174 333 247 342 0 0 0 chr4 34085225 34085263 -150203399 + (TG)n Simple_repeat Simple_repeat 2 39 0 367 351 65 103 chr4 34085263 34085540 -150203122 - HAL1 LINE L1 -2260 247 7 24 0 0 0 chr4 34086189 34086213 -150202449 + AT_rich Low_complexity Low_complexity 1 24 0 3514 215 42 33 chr4 34086819 34087236 -150201426 - L1MB8 LINE L1 -108 6881 6469 892 112 0 0 chr4 34087236 34087370 -150201292 - L1PA14 LINE L1 -3 6158 6025 3514 215 42 33 chr4 34087370 34088818 -150199844 - L1MB8 LINE L1 -520 6469 4998 36 82 0 0 chr4 34088854 34088939 -150199723 + AT_rich Low_complexity Low_complexity 1 85 0 1290 279 32 16 chr4 34088939 34089434 -150199228 - L1MB8 LINE L1 -1980 4977 4475 6922 62 0 8 chr4 34089554 34091199 -150197463 - L1PA6 LINE L1 0 6154 4513 1388 242 78 67 chr4 34091203 34092177 -150196485 - L1MB8 LINE L1 -2446 4511 3527 25 0 0 0 chr4 34092177 34092202 -150196460 + AT_rich Low_complexity Low_complexity 1 25 0 1808 293 49 31 chr4 34092252 34093327 -150195335 - L1MB8 LINE L1 -4536 2423 1329 1691 335 61 26 chr4 34093984 34094822 -150193840 - L1MB8 LINE L1 -5951 908 42 27 29 0 0 chr4 34094907 34094941 -150193721 + AT_rich Low_complexity Low_complexity 1 34 0 1116 277 52 38 chr4 34094981 34095479 -150193183 + MLT1D LTR MaLR 1 505 0 26 30 0 0 chr4 34095602 34095635 -150193027 + AT_rich Low_complexity Low_complexity 1 33 0 311 253 46 11 chr4 34095640 34095727 -150192935 + L1MC4 LINE L1 6621 6710 -1332 217 341 55 0 chr4 34097790 34097881 -150190781 - L2 LINE L2 -775 2539 2444 193 347 14 0 chr4 34100742 34100814 -150187848 - MIR SINE MIR -127 135 63 743 200 0 0 chr4 34101954 34102084 -150186578 + FLAM_C SINE Alu 2 131 -2 6453 75 12 8 chr4 34104004 34105354 -150183308 + L1PA7 LINE L1 4795 6148 -6 285 246 0 0 chr4 34105357 34105422 -150183240 + L1MCa LINE L1 1612 1676 -4750 252 0 0 0 chr4 34105424 34105452 -150183210 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 664 332 20 10 chr4 34106578 34106870 -150181792 + MLT1J1 LTR MaLR 8 302 -144 24 32 0 0 chr4 34107219 34107250 -150181412 + AT_rich Low_complexity Low_complexity 1 31 0 666 221 12 18 chr4 34108120 34108283 -150180379 + MER3 DNA MER1_type 23 184 -25 1715 182 3 13 chr4 34108773 34109080 -150179582 + AluJb SINE Alu 1 304 -8 414 315 32 37 chr4 34111836 34112052 -150176610 - L2 LINE L2 -1 3312 3098 5655 160 24 34 chr4 34112359 34112544 -150176118 - L1MA3 LINE L1 0 6305 6120 1569 185 33 0 chr4 34112544 34112820 -150175842 + AluJb SINE Alu 1 285 -27 5655 160 24 34 chr4 34112820 34113032 -150175630 - L1MA3 LINE L1 -185 6120 5907 1681 159 0 57 chr4 34113032 34113352 -150175310 + AluSx SINE Alu 5 307 0 5655 160 24 34 chr4 34113352 34114281 -150174381 - L1MA3 LINE L1 -398 5907 4994 208 271 0 0 chr4 34114768 34114816 -150173846 + L2 LINE L2 2602 2649 -665 23 33 0 0 chr4 34114886 34114916 -150173746 + AT_rich Low_complexity Low_complexity 1 30 0 1396 207 26 0 chr4 34114923 34115193 -150173469 - AluJo SINE Alu -22 290 14 1951 111 0 52 chr4 34115522 34115847 -150172815 + AluSc SINE Alu 1 308 -1 2796 10 0 0 chr4 34116295 34116602 -150172060 + AluY SINE Alu 1 307 -4 35 63 0 0 chr4 34116902 34116965 -150171697 + AT_rich Low_complexity Low_complexity 1 63 0 1311 239 32 67 chr4 34117491 34118014 -150170648 + MLT1D LTR MaLR 1 505 0 34 24 0 0 chr4 34118239 34118280 -150170382 + AT_rich Low_complexity Low_complexity 1 41 0 510 305 112 9 chr4 34118586 34118809 -150169853 + MIR SINE MIR 7 252 -10 254 71 0 24 chr4 34119259 34119301 -150169361 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1287 220 0 52 chr4 34119307 34119598 -150169064 - AluJo SINE Alu -36 276 1 5624 110 38 6 chr4 34119637 34120738 -150167924 + L1PA10 LINE L1 5017 6157 -11 211 324 88 0 chr4 34121299 34121401 -150167261 - L2 LINE L2 0 3313 3203 21 36 0 0 chr4 34121836 34121864 -150166798 + AT_rich Low_complexity Low_complexity 1 28 0 2199 107 0 3 chr4 34122031 34122340 -150166322 + AluY SINE Alu 1 308 -3 336 24 0 0 chr4 34123519 34123560 -150165102 + (CA)n Simple_repeat Simple_repeat 2 42 0 5180 158 14 10 chr4 34124102 34125011 -150163651 - L1PA16 LINE L1 0 6166 5254 283 128 0 0 chr4 34125046 34125093 -150163569 - L1PA16 LINE L1 -860 5286 5240 3938 226 19 25 chr4 34125094 34125637 -150163025 + L1P LINE L1 4235 4769 -1377 192 40 0 0 chr4 34125637 34125662 -150163000 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3938 226 19 25 chr4 34125662 34126146 -150162516 + L1P LINE L1 4769 5255 -891 1908 140 29 45 chr4 34127155 34127534 -150161128 + THE1C LTR MaLR 1 373 -2 956 202 17 45 chr4 34127723 34128010 -150160652 - L1MB2 LINE L1 -2 7129 6851 1412 109 0 92 chr4 34128016 34128245 -150160417 - AluSc SINE Alu -81 228 21 2135 189 48 50 chr4 34128256 34128774 -150159888 - L1MB2 LINE L1 -343 6788 6271 509 113 0 12 chr4 34128774 34128854 -150159808 + MADE1 DNA Mariner 1 79 -1 2135 189 48 50 chr4 34128854 34129390 -150159272 - L1MB2 LINE L1 -860 6271 5719 4548 236 62 24 chr4 34129391 34130993 -150157669 - L1MB2 LINE L1 -2200 4906 3244 287 282 45 13 chr4 34130998 34131154 -150157508 - L1MB2 LINE L1 -3965 3143 2983 2200 282 54 31 chr4 34131241 34131588 -150157074 - L1MB2 LINE L1 -4512 2596 2258 216 0 0 0 chr4 34131588 34131612 -150157050 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2200 282 54 31 chr4 34131612 34132308 -150156354 - L1MB2 LINE L1 -4850 2258 1529 230 332 67 45 chr4 34132456 34132679 -150155983 - L1MB2 LINE L1 -6802 228 1 21 36 0 0 chr4 34132928 34132956 -150155706 + AT_rich Low_complexity Low_complexity 1 28 0 965 284 78 35 chr4 34133742 34134348 -150154314 + MLT1E3 LTR MaLR 1 621 -3 315 0 0 0 chr4 34134359 34134394 -150154268 + (TA)n Simple_repeat Simple_repeat 1 35 0 474 234 70 104 chr4 34134671 34134970 -150153692 + L1ME3A LINE L1 5853 6141 -29 889 277 113 41 chr4 34134981 34135109 -150153553 - L1ME3A LINE L1 -335 5835 5718 1860 154 3 3 chr4 34135109 34135401 -150153261 + AluJb SINE Alu 1 292 -20 889 277 113 41 chr4 34135401 34135968 -150152694 - L1ME3A LINE L1 -452 5718 5096 407 311 71 46 chr4 34136040 34136134 -150152528 + MIR SINE MIR 6 96 -166 2011 212 26 9 chr4 34136134 34136348 -150152314 - MSTB1 LTR MaLR 0 432 223 369 0 0 0 chr4 34136348 34136389 -150152273 + (TG)n Simple_repeat Simple_repeat 1 41 0 2011 212 26 9 chr4 34136389 34136599 -150152063 - MSTB1 LTR MaLR -209 223 1 407 311 71 46 chr4 34136599 34136742 -150151920 + MIR SINE MIR 96 249 -13 359 325 25 25 chr4 34136935 34137135 -150151527 - LTR67 LTR ERVL 0 557 358 1335 262 36 25 chr4 34137311 34137673 -150150989 + MLT1E LTR MaLR 226 591 -2 2260 92 7 0 chr4 34138940 34139234 -150149428 + AluY SINE Alu 1 296 -15 26 30 0 0 chr4 34139364 34139397 -150149265 + AT_rich Low_complexity Low_complexity 1 33 0 1514 266 48 48 chr4 34139535 34140032 -150148630 + MLT1F1 LTR MaLR 46 567 0 39 22 0 0 chr4 34140831 34140877 -150147785 + AT_rich Low_complexity Low_complexity 1 46 0 1854 136 0 32 chr4 34141397 34141706 -150146956 + AluSx SINE Alu 3 301 -11 1857 139 0 43 chr4 34141911 34142234 -150146428 + AluY SINE Alu 1 309 -2 303 279 12 67 chr4 34142275 34142440 -150146222 - HAL1 LINE L1 -4 2503 2348 322 198 21 21 chr4 34142625 34142721 -150145941 - HAL1 LINE L1 -297 2210 2115 1724 223 55 81 chr4 34142721 34143386 -150145276 + MLT1E2 LTR MaLR 1 626 0 2418 64 0 13 chr4 34143563 34143877 -150144785 - AluY SINE Alu -1 310 1 293 227 50 25 chr4 34144252 34144371 -150144291 - HAL1 LINE L1 -1421 1086 965 2262 283 93 11 chr4 34144396 34145277 -150143385 - MER69B DNA AcHobo -273 953 1 22 35 0 0 chr4 34145560 34145589 -150143073 + AT_rich Low_complexity Low_complexity 1 29 0 417 374 67 43 chr4 34146120 34146660 -150142002 - HAL1 LINE L1 -1813 694 142 1479 240 34 16 chr4 34146793 34147176 -150141486 + MLT1B LTR MaLR 1 390 0 251 333 103 8 chr4 34148072 34148189 -150140473 + MER91C DNA MER1_type 2 129 -11 1638 203 14 14 chr4 34148497 34148862 -150139800 + MLT1A1 LTR MaLR 1 365 0 23 33 0 0 chr4 34150282 34150312 -150138350 + AT_rich Low_complexity Low_complexity 1 30 0 3692 58 0 2 chr4 34151049 34151518 -150137144 + L1PA8 LINE L1 5694 6161 -11 37 23 0 0 chr4 34151544 34151588 -150137074 + AT_rich Low_complexity Low_complexity 1 44 0 1345 233 98 34 chr4 34152057 34152525 -150136137 + MLT1D LTR MaLR 4 501 -4 596 343 72 52 chr4 34152611 34153645 -150135017 + L2 LINE L2 2148 3201 -71 316 282 51 0 chr4 34154013 34154130 -150134532 + Tigger8 DNA MER2_type 147 269 -397 359 329 81 20 chr4 34154189 34154487 -150134175 + MLT1L LTR MaLR 65 380 -235 484 312 23 18 chr4 34154694 34154912 -150133750 + Tigger8 DNA MER2_type 348 566 -100 27 62 0 0 chr4 34155040 34155088 -150133574 + AT_rich Low_complexity Low_complexity 1 48 0 180 0 0 0 chr4 34155386 34155406 -150133256 + (T)n Simple_repeat Simple_repeat 1 20 0 185 62 0 31 chr4 34155539 34155571 -150133091 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 24 53 0 0 chr4 34156094 34156132 -150132530 + AT_rich Low_complexity Low_complexity 1 38 0 2213 93 3 3 chr4 34156516 34156806 -150131856 - AluSx SINE Alu -20 292 3 200 296 71 51 chr4 34157022 34157120 -150131542 + L3b LINE CR1 1358 1457 -126 446 286 58 7 chr4 34157338 34157492 -150131170 + MIR3 SINE MIR 40 201 -7 1255 217 75 3 chr4 34157662 34157980 -150130682 - MLT1C LTR MaLR -124 343 3 180 210 0 65 chr4 34158084 34158146 -150130516 - MIR SINE MIR -30 232 175 1822 156 0 17 chr4 34158347 34158649 -150130013 + AluSx SINE Alu 3 299 -13 339 244 67 0 chr4 34158914 34159004 -150129658 - MIR SINE MIR -100 162 67 1039 241 56 56 chr4 34159396 34159753 -150128909 - MLT1A2 LTR MaLR 0 374 18 285 149 0 0 chr4 34160863 34160930 -150127732 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 269 282 2 0 chr4 34161242 34161318 -150127344 + MER77 LTR ERV1 22 138 -467 2305 179 19 21 chr4 34161342 34161828 -150126834 - MER31A LTR ERV1 0 485 1 676 169 180 11 chr4 34161847 34162025 -150126637 - L1MA9 LINE L1 -1 6311 6104 2359 59 0 0 chr4 34162030 34162316 -150126346 + AluY SINE Alu 17 302 -9 337 267 0 24 chr4 34162363 34162486 -150126176 + MER21B LTR ERV1 247 366 -239 3114 170 83 33 chr4 34162486 34163174 -150125488 + LTR8A LTR ERV1 1 722 -5 363 294 18 76 chr4 34163241 34163495 -150125167 + MER77 LTR ERV1 409 585 -20 348 182 30 15 chr4 34164391 34164457 -150124205 + MER5A DNA MER1_type 46 112 -77 396 179 40 0 chr4 34164458 34164609 -150124053 + (TA)n Simple_repeat Simple_repeat 2 158 0 617 339 119 27 chr4 34164640 34165234 -150123428 - L2 LINE L2 -113 3200 2551 213 330 62 78 chr4 34165292 34165677 -150122985 - L2 LINE L2 -905 2409 2031 1332 178 98 22 chr4 34165678 34165953 -150122709 + AluJo SINE Alu 1 296 -16 285 301 21 21 chr4 34166457 34166550 -150122112 - L2 LINE L2 -3134 180 88 446 290 101 25 chr4 34166717 34166955 -150121707 - MER21B LTR ERV1 -149 714 459 433 237 80 92 chr4 34166948 34167181 -150121481 - MER77 LTR ERV1 -226 379 145 * 450 275 37 123 chr4 34167524 34167768 -150120894 + MER58A DNA MER1_type 1 223 -1 276 282 8 46 chr4 34167826 34167957 -150120705 + MLT1J LTR MaLR 386 511 0 21 0 0 0 chr4 34170422 34170443 -150118219 + AT_rich Low_complexity Low_complexity 1 21 0 2258 92 10 0 chr4 34171790 34172084 -150116578 - AluY SINE Alu -12 299 3 7224 48 6 0 chr4 34172308 34173230 -150115432 + L1PA3 LINE L1 5228 6155 0 1199 234 164 28 chr4 34173230 34173699 -150114963 + MER92B LTR ERV1 100 632 -4 237 252 18 156 chr4 34173723 34173830 -150114832 + MER92C LTR ERV1 2 65 -489 1451 216 146 47 chr4 34173830 34174297 -150114365 - MER67D LTR ERV1 -1 513 1 237 252 18 156 chr4 34174297 34174407 -150114255 + MER92C LTR ERV1 65 189 -365 235 246 46 0 chr4 34174452 34174517 -150114145 + MER92C LTR ERV1 487 554 0 2087 183 2 20 chr4 34175563 34175968 -150112694 + MER57A LTR ERV1 6 403 0 28 86 0 0 chr4 34176217 34176287 -150112375 + AT_rich Low_complexity Low_complexity 1 70 0 21 0 0 0 chr4 34176402 34176423 -150112239 + AT_rich Low_complexity Low_complexity 1 21 0 273 98 0 0 chr4 34177067 34177108 -150111554 + (CA)n Simple_repeat Simple_repeat 2 42 0 747 48 48 0 chr4 34177618 34177743 -150110919 + (GA)n Simple_repeat Simple_repeat 2 132 0 2339 218 19 23 chr4 34178698 34179180 -150109482 - MLT2B1 LTR ERVL -40 480 1 2344 157 13 60 chr4 34180600 34181047 -150107615 - MSTB LTR MaLR 0 426 1 689 148 74 0 chr4 34181047 34181182 -150107480 - MSTB-int LTR MaLR 0 1651 1507 563 285 21 43 chr4 34181562 34181748 -150106914 + MER58A DNA MER1_type 26 207 -17 421 303 74 71 chr4 34182133 34183066 -150105596 - L1MEd LINE L1 -4750 1560 586 793 319 61 63 chr4 34183813 34184340 -150104322 + LTR67 LTR ERVL 32 557 0 240 358 6 48 chr4 34184757 34184922 -150103740 + L2 LINE L2 3156 3313 0 21 57 0 0 chr4 34184985 34185020 -150103642 + AT_rich Low_complexity Low_complexity 1 35 0 1660 283 22 15 chr4 34185443 34185981 -150102681 - MLT1F LTR MaLR 0 542 1 24 32 0 0 chr4 34186378 34186409 -150102253 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr4 34186677 34186703 -150101959 + AT_rich Low_complexity Low_complexity 1 26 0 1617 202 20 15 chr4 34186810 34187152 -150101510 + MER2 DNA MER2_type 1 344 0 35 41 0 0 chr4 34187427 34187476 -150101186 + AT_rich Low_complexity Low_complexity 1 49 0 1233 234 77 92 chr4 34187483 34188166 -150100496 + MER21B LTR ERV1 25 754 -109 180 0 0 0 chr4 34189147 34189167 -150099495 + (TTG)n Simple_repeat Simple_repeat 2 21 0 26 50 0 0 chr4 34189576 34189616 -150099046 + AT_rich Low_complexity Low_complexity 1 40 0 347 324 58 9 chr4 34189673 34189847 -150098815 - MIR SINE MIR -64 144 9 191 32 65 0 chr4 34190427 34190458 -150098204 + (ATATG)n Simple_repeat Simple_repeat 2 34 0 27 49 0 0 chr4 34190534 34190575 -150098087 + AT_rich Low_complexity Low_complexity 1 41 0 2338 79 3 0 chr4 34190584 34190889 -150097773 - AluY SINE Alu -5 306 1 209 326 104 41 chr4 34191517 34191738 -150096924 + L2 LINE L2 2982 3216 -97 606 204 51 7 chr4 34191928 34192065 -150096597 + MER82 DNA MER2_type 1 143 -510 1333 266 67 32 chr4 34192470 34192906 -150095756 + MER82 DNA MER2_type 200 650 -3 2798 10 0 0 chr4 34193817 34194126 -150094536 + AluYb8 SINE Alu 1 309 -9 408 311 13 13 chr4 34194492 34194643 -150094019 - L2 LINE L2 -4 3309 3159 326 283 80 22 chr4 34195033 34195171 -150093491 - LTR16B LTR ERVL -14 450 305 826 78 39 0 chr4 34195257 34195386 -150093276 - L1MA4A LINE L1 -64 6239 6106 27 29 0 0 chr4 34195606 34195640 -150093022 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chr4 34196033 34196057 -150092605 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr4 34196277 34196305 -150092357 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr4 34197787 34197827 -150090835 + AT_rich Low_complexity Low_complexity 1 40 0 289 274 9 44 chr4 34197993 34198106 -150090556 + L1MA10 LINE L1 6215 6323 -11 370 224 24 0 chr4 34198641 34198766 -150089896 + CT-rich Low_complexity Low_complexity 3 130 0 243 204 75 43 chr4 34199254 34199347 -150089315 - L1ME LINE L1 -301 5820 5725 309 214 10 92 chr4 34199723 34199821 -150088841 + L1MC4 LINE L1 6614 6703 -1339 252 159 37 19 chr4 34199822 34199843 -150088819 + (TA)n Simple_repeat Simple_repeat 1 20 -89 2070 126 0 0 chr4 34199843 34200128 -150088534 - AluSq SINE Alu -26 287 3 252 159 37 19 chr4 34200128 34200213 -150088449 + (TA)n Simple_repeat Simple_repeat 20 109 0 23 0 0 0 chr4 34200251 34200274 -150088388 + AT_rich Low_complexity Low_complexity 1 23 0 190 148 37 0 chr4 34200291 34200345 -150088317 + (TA)n Simple_repeat Simple_repeat 1 56 0 392 252 81 9 chr4 34200345 34200456 -150088206 - FLAM_A SINE Alu -14 119 1 2260 101 49 38 chr4 34202000 34202192 -150086470 - THE1B LTR MaLR 0 364 165 1908 138 10 30 chr4 34202192 34202497 -150086165 - AluSp SINE Alu -14 299 1 2260 101 49 38 chr4 34202497 34202650 -150086012 - THE1B LTR MaLR -199 165 15 231 188 0 0 chr4 34203311 34203359 -150085303 + (CA)n Simple_repeat Simple_repeat 1 48 0 25 31 0 0 chr4 34203620 34203652 -150085010 + AT_rich Low_complexity Low_complexity 1 32 0 29 78 0 0 chr4 34204029 34204093 -150084569 + AT_rich Low_complexity Low_complexity 1 64 0 2121 181 41 14 chr4 34204622 34205037 -150083625 + MSTB LTR MaLR 1 426 0 333 68 0 0 chr4 34205373 34205417 -150083245 + (CAAAA)n Simple_repeat Simple_repeat 4 47 0 23 33 0 0 chr4 34205461 34205491 -150083171 + AT_rich Low_complexity Low_complexity 1 30 0 188 0 74 0 chr4 34205894 34205921 -150082741 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1361 201 48 8 chr4 34205924 34206192 -150082470 - AluJb SINE Alu -27 285 7 377 250 24 18 chr4 34206702 34206866 -150081796 + (TA)n Simple_repeat Simple_repeat 2 166 0 24 0 0 0 chr4 34206908 34206932 -150081730 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr4 34207570 34207600 -150081062 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 34208049 34208070 -150080592 + AT_rich Low_complexity Low_complexity 1 21 0 2202 95 3 0 chr4 34208108 34208404 -150080258 - AluSg SINE Alu -13 297 1 25 0 0 0 chr4 34209594 34209619 -150079043 + AT_rich Low_complexity Low_complexity 1 25 0 24 67 0 0 chr4 34209681 34209726 -150078936 + AT_rich Low_complexity Low_complexity 1 45 0 948 92 15 0 chr4 34210222 34210352 -150078310 - AluYb8 SINE Alu -186 132 1 2290 101 0 0 chr4 34211267 34211565 -150077097 + AluSc SINE Alu 5 302 -7 34 24 0 0 chr4 34211745 34211786 -150076876 + AT_rich Low_complexity Low_complexity 1 41 0 181 315 14 14 chr4 34212116 34212189 -150076473 + MIR SINE MIR 159 231 -31 1519 99 25 58 chr4 34212465 34212708 -150075954 + THE1A LTR MaLR 1 235 -120 3540 10 0 0 chr4 34212708 34213104 -150075558 - L1PA3 LINE L1 -304 5851 5456 2382 25 0 0 chr4 34213104 34213383 -150075279 + L1PA3 LINE L1 5876 6155 0 872 133 0 15 chr4 34213390 34213525 -150075137 + THE1A LTR MaLR 223 355 0 417 102 0 0 chr4 34213613 34213672 -150074990 + MADE1 DNA Mariner 22 80 0 2213 144 10 13 chr4 34213721 34214118 -150074544 - L1MA2 LINE L1 0 6304 5909 1508 254 74 52 chr4 34214180 34215366 -150073296 - L1M4c LINE L1 -3160 3055 1876 2077 179 5 47 chr4 34215373 34215757 -150072905 + MLT2D LTR ERVL 1 367 -47 408 20 0 0 chr4 34215757 34215806 -150072856 + (TA)n Simple_repeat Simple_repeat 2 50 0 2077 179 5 47 chr4 34215806 34215846 -150072816 + MLT2D LTR ERVL 367 407 -7 577 297 52 80 chr4 34215854 34216123 -150072539 - L1M4c LINE L1 -4535 1861 1586 2284 108 0 0 chr4 34216123 34216419 -150072243 + AluSc SINE Alu 1 296 -13 577 297 52 80 chr4 34216419 34217367 -150071295 - L1M4c LINE L1 -4810 1586 670 21 0 0 0 chr4 34217641 34217662 -150071000 + AT_rich Low_complexity Low_complexity 1 21 0 756 169 0 22 chr4 34217718 34217854 -150070808 - FLAM_C SINE Alu 0 133 1 3028 111 25 0 chr4 34218716 34219165 -150069497 + L1PB1 LINE L1 5691 6150 -1 1266 212 9 51 chr4 34219222 34219538 -150069124 - AluJo SINE Alu -7 305 3 335 342 61 53 chr4 34221231 34221459 -150067203 + MIR SINE MIR 33 262 0 368 167 0 13 chr4 34222533 34222611 -150066051 + GA-rich Low_complexity Low_complexity 4 80 0 286 109 87 0 chr4 34223245 34223337 -150065325 + (TA)n Simple_repeat Simple_repeat 2 101 0 347 250 80 43 chr4 34223933 34224121 -150064541 - LTR50 LTR ERVL -591 204 10 209 333 148 14 chr4 34224122 34224332 -150064330 - L3 LINE CR1 -467 1110 873 413 226 68 7 chr4 34225058 34225204 -150063458 - MER103 DNA DNA -10 156 2 1750 160 3 14 chr4 34226182 34226475 -150062187 + AluJb SINE Alu 3 292 -20 237 229 0 31 chr4 34226732 34226828 -150061834 + T-rich Low_complexity Low_complexity 1 93 0 34 0 0 0 chr4 34226832 34226866 -150061796 + AT_rich Low_complexity Low_complexity 1 34 0 317 263 0 0 chr4 34226866 34226923 -150061739 + T-rich Low_complexity Low_complexity 1 57 0 242 237 0 0 chr4 34226979 34227055 -150061607 + T-rich Low_complexity Low_complexity 1 76 0 68 28 0 0 chr4 34227055 34227127 -150061535 + AT_rich Low_complexity Low_complexity 1 72 0 194 36 18 91 chr4 34227144 34227199 -150061463 + (TTTA)n Simple_repeat Simple_repeat 3 53 0 930 194 35 30 chr4 34228590 34228822 -150059840 + L1MA4 LINE L1 6067 6299 -1 1189 48 0 0 chr4 34229612 34229757 -150058905 - AluY SINE Alu -166 145 1 184 229 12 108 chr4 34230445 34230528 -150058134 + MIR SINE MIR 129 203 -59 384 22 0 0 chr4 34231668 34231713 -150056949 + (CA)n Simple_repeat Simple_repeat 1 45 0 394 106 76 0 chr4 34232424 34232490 -150056172 - MADE1 DNA Mariner -7 73 3 1164 208 140 4 chr4 34232502 34232752 -150055910 - AluJb SINE Alu -18 284 1 21 0 0 0 chr4 34232753 34232774 -150055888 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 34233332 34233354 -150055308 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr4 34233761 34233796 -150054866 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr4 34233995 34234019 -150054643 + AT_rich Low_complexity Low_complexity 1 24 0 298 353 139 5 chr4 34234984 34235185 -150053477 - MIR SINE MIR -1 261 34 2332 73 3 0 chr4 34235458 34235758 -150052904 + AluY SINE Alu 1 301 -10 24 32 0 0 chr4 34236955 34236986 -150051676 + AT_rich Low_complexity Low_complexity 1 31 0 1829 180 36 30 chr4 34237393 34237755 -150050907 + THE1B LTR MaLR 1 364 0 1054 69 0 0 chr4 34238006 34238150 -150050512 - L1PA4 LINE L1 -1 6154 6011 342 0 0 0 chr4 34240126 34240164 -150048498 + (TG)n Simple_repeat Simple_repeat 1 38 0 1061 147 0 0 chr4 34241645 34241802 -150046860 + FRAM SINE Alu 1 40 0 923 198 81 127 chr4 34242436 34242544 -150046118 + MLT1B LTR MaLR 1 112 -278 1554 194 66 0 chr4 34242544 34242833 -150045829 + AluJb SINE Alu 3 310 -2 923 198 81 127 chr4 34242833 34243133 -150045529 + MLT1B LTR MaLR 112 390 0 2330 194 30 42 chr4 34243155 34243655 -150045007 + Tigger7 DNA MER2_type 10 503 -230 408 236 0 66 chr4 34243649 34243755 -150044907 + Tigger7 DNA MER2_type 2388 2486 -1 * 1031 267 105 34 chr4 34244209 34245046 -150043616 + L1ME1 LINE L1 1194 2277 -4330 1829 161 120 28 chr4 34245047 34245439 -150043223 - MSTA LTR MaLR 0 428 1 8687 158 29 20 chr4 34245439 34247004 -150041658 - MSTA-int LTR MaLR 0 1580 2 1755 167 61 19 chr4 34247005 34247364 -150041298 - THE1C LTR MaLR 0 375 2 1338 168 0 0 chr4 34247364 34247590 -150041072 - MSTA-int LTR MaLR -1352 228 3 1598 199 134 11 chr4 34247592 34247973 -150040689 - MSTA LTR MaLR 0 428 1 3411 266 56 74 chr4 34250209 34251083 -150037579 + L1ME1 LINE L1 2424 3312 -3114 1346 211 28 10 chr4 34251083 34251372 -150037290 + AluJb SINE Alu 1 294 -18 3411 266 56 74 chr4 34251372 34253231 -150035431 + L1ME1 LINE L1 3312 5097 -1329 * 4580 245 59 11 chr4 34253223 34255326 -150033336 + L1MC3 LINE L1 4443 5387 -759 188 163 23 0 chr4 34255326 34255369 -150033293 + (TA)n Simple_repeat Simple_repeat 2 45 0 2901 96 0 8 chr4 34255370 34255767 -150032895 + MLT2A1 LTR ERVL 5 398 -46 305 82 20 0 chr4 34255839 34255888 -150032774 + (TC)n Simple_repeat Simple_repeat 2 51 0 201 154 0 0 chr4 34255887 34255926 -150032736 + (TA)n Simple_repeat Simple_repeat 2 40 0 * 6227 73 26 9 chr4 34255967 34256819 -150031843 + HERVL-A1 LTR ERVL 232 1097 -4557 762 252 35 108 chr4 34256819 34256936 -150031726 + L1ME1 LINE L1 5929 6053 -393 1785 72 47 0 chr4 34256936 34257209 -150031453 + AluY SINE Alu 39 322 0 762 252 35 108 chr4 34257209 34257638 -150031024 + L1ME1 LINE L1 6053 6436 -10 26 30 0 0 chr4 34257903 34257936 -150030726 + AT_rich Low_complexity Low_complexity 1 33 0 358 380 51 25 chr4 34258012 34258367 -150030295 - L3 LINE CR1 -81 1496 1133 190 216 27 0 chr4 34259828 34259902 -150028760 + CT-rich Low_complexity Low_complexity 2 77 0 181 407 97 4 chr4 34260640 34260866 -150027796 + L2 LINE L2 2419 2665 -649 2206 81 0 14 chr4 34262584 34262899 -150025763 - AluSg SINE Alu 0 310 2 25 0 0 0 chr4 34263065 34263090 -150025572 + AT_rich Low_complexity Low_complexity 1 25 0 3059 158 81 7 chr4 34263663 34264253 -150024409 + L1PA16 LINE L1 5533 6166 0 183 188 62 0 chr4 34264397 34264445 -150024217 - MIR SINE MIR -55 207 157 28 29 0 0 chr4 34264515 34264550 -150024112 + AT_rich Low_complexity Low_complexity 1 35 0 1389 204 30 35 chr4 34264593 34264990 -150023672 - L1MB1 LINE L1 -1 6167 5773 319 163 88 6 chr4 34264991 34265151 -150023511 + (TA)n Simple_repeat Simple_repeat 1 173 0 190 103 29 44 chr4 34265156 34265224 -150023438 + (TTATA)n Simple_repeat Simple_repeat 3 69 0 22 56 0 0 chr4 34265228 34265264 -150023398 + AT_rich Low_complexity Low_complexity 1 36 0 1950 281 58 28 chr4 34265279 34267118 -150021544 - L1 LINE L1 -3714 3851 2012 189 74 0 0 chr4 34267150 34267177 -150021485 + (TC)n Simple_repeat Simple_repeat 2 28 0 526 346 76 22 chr4 34267395 34267788 -150020874 - L1 LINE L1 -5768 1728 1217 28 29 0 0 chr4 34267851 34267886 -150020776 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr4 34268713 34268741 -150019921 + AT_rich Low_complexity Low_complexity 1 28 0 448 213 14 85 chr4 34268800 34268941 -150019721 + L2 LINE L2 3164 3294 -19 222 320 27 13 chr4 34268970 34269045 -150019617 - L2 LINE L2 -50 3263 3188 219 132 15 59 chr4 34270670 34270738 -150017924 + (TATAA)n Simple_repeat Simple_repeat 1 65 0 3206 65 9 2 chr4 34270749 34271177 -150017485 + L1PA7 LINE L1 5724 6154 0 243 146 0 0 chr4 34271300 34271341 -150017321 + (TG)n Simple_repeat Simple_repeat 1 41 0 222 361 105 38 chr4 34271507 34271745 -150016917 + L2 LINE L2 3018 3271 -1 1668 136 70 0 chr4 34272323 34272438 -150016224 + AluSx SINE Alu 7 113 -199 423 0 0 0 chr4 34272438 34272485 -150016177 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1668 136 70 0 chr4 34272485 34272655 -150016007 + AluSx SINE Alu 113 312 0 23 0 0 0 chr4 34272824 34272847 -150015815 + AT_rich Low_complexity Low_complexity 1 23 0 3703 203 30 45 chr4 34273239 34274664 -150013998 + L1MA10 LINE L1 4928 6324 -10 231 188 0 0 chr4 34276002 34276050 -150012612 + (TATATG)n Simple_repeat Simple_repeat 1 48 0 229 258 11 11 chr4 34276050 34276139 -150012523 + L1MC4 LINE L1 6615 6703 -1339 21 71 0 0 chr4 34276162 34276204 -150012458 + AT_rich Low_complexity Low_complexity 1 42 0 283 223 115 69 chr4 34276876 34277006 -150011656 + MIR SINE MIR 79 214 -48 21 0 0 0 chr4 34277089 34277110 -150011552 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr4 34277257 34277288 -150011374 + AT_rich Low_complexity Low_complexity 1 31 0 2106 112 6 10 chr4 34277290 34277603 -150011059 + AluSx SINE Alu 1 312 0 1077 250 138 33 chr4 34278139 34278595 -150010067 - MLT1D LTR MaLR -8 497 1 35 63 0 0 chr4 34279029 34279092 -150009570 + AT_rich Low_complexity Low_complexity 1 63 0 2185 118 0 0 chr4 34279245 34279550 -150009112 + AluSx SINE Alu 1 305 -7 22 0 0 0 chr4 34279827 34279849 -150008813 + AT_rich Low_complexity Low_complexity 1 22 0 575 89 16 40 chr4 34279983 34280284 -150008378 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2218 115 0 3 chr4 34280284 34280597 -150008065 - AluSx SINE Alu 0 613 1 1416 213 66 49 chr4 34281592 34282136 -150006526 + MLT2A2 LTR ERVL 1 554 0 272 234 85 11 chr4 34282560 34282654 -150006008 - LTR16A1 LTR ERVL -43 414 314 1610 215 22 47 chr4 34283108 34283596 -150005066 - L1PA16 LINE L1 -786 5360 4885 4447 157 22 4 chr4 34283596 34284368 -150004294 + L1PA16 LINE L1 5381 6166 0 483 259 150 34 chr4 34284789 34285055 -150003607 + LTR33A LTR ERVL 223 519 -4 600 208 95 54 chr4 34285529 34285679 -150002983 - L1MD3 LINE L1 -19 7976 7813 1857 136 0 42 chr4 34285679 34285989 -150002673 + AluSg SINE Alu 1 297 -13 600 208 95 54 chr4 34285989 34286059 -150002603 - L1MD3 LINE L1 -182 7813 7747 264 100 0 0 chr4 34286090 34286130 -150002532 + (CCAA)n Simple_repeat Simple_repeat 4 43 0 251 303 80 37 chr4 34286154 34286342 -150002320 + HAL1 LINE L1 1412 1607 -900 272 328 102 21 chr4 34286949 34287135 -150001527 - LTR33 LTR ERVL 0 521 321 328 385 66 0 chr4 34287196 34287378 -150001284 - LTR33 LTR ERVL -309 212 19 1422 208 120 8 chr4 34288622 34288973 -149999689 - MLT1B LTR MaLR 0 390 1 278 278 66 28 chr4 34290172 34290384 -149998278 + L1 LINE L1 2401 2620 -3526 256 135 0 0 chr4 34290698 34290735 -149997927 + L1 LINE L1 3875 3911 -2235 22 80 0 0 chr4 34290741 34290791 -149997871 + AT_rich Low_complexity Low_complexity 1 50 0 473 292 151 39 chr4 34290847 34291278 -149997384 + L1 LINE L1 4035 4513 -1633 218 267 160 0 chr4 34292748 34292823 -149995839 + L2 LINE L2 3220 3306 -7 5457 123 25 6 chr4 34293718 34294614 -149994048 + L1MA1 LINE L1 1944 2856 -4709 * 9478 173 23 10 chr4 34294595 34295552 -149993110 + L1MA1 LINE L1 4627 5571 -2150 1885 135 0 52 chr4 34295552 34295879 -149992783 + AluSx SINE Alu 1 310 -2 9478 173 23 10 chr4 34295879 34296886 -149991776 + L1MA1 LINE L1 5571 6564 -1157 2265 92 3 3 chr4 34296886 34297191 -149991471 + AluSg SINE Alu 1 305 -5 9478 173 23 10 chr4 34297191 34298279 -149990383 + L1MA1 LINE L1 6564 7721 0 727 366 117 10 chr4 34298426 34298929 -149989733 - L2 LINE L2 -2728 586 30 200 383 65 0 chr4 34299010 34299117 -149989545 + MIR3 SINE MIR 65 178 -30 388 374 70 0 chr4 34299212 34299442 -149989220 - MIR SINE MIR 0 262 17 23 0 0 0 chr4 34299483 34299506 -149989156 + AT_rich Low_complexity Low_complexity 1 23 0 2190 66 28 3 chr4 34300265 34300551 -149988111 + AluSq SINE Alu 4 296 -17 231 36 0 0 chr4 34300560 34300588 -149988074 + (GGGGA)n Simple_repeat Simple_repeat 5 32 0 677 105 0 9 chr4 34300613 34300727 -149987935 + (GGAA)n Simple_repeat Simple_repeat 3 115 0 24 32 0 0 chr4 34300970 34301001 -149987661 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr4 34301266 34301290 -149987372 + AT_rich Low_complexity Low_complexity 1 24 0 1955 132 60 30 chr4 34301650 34302014 -149986648 + THE1C LTR MaLR 1 375 0 698 244 35 0 chr4 34302604 34302776 -149985886 + MER20 DNA MER1_type 1 178 -41 1713 290 71 28 chr4 34303094 34304083 -149984579 - L1ME2 LINE L1 -243 5990 5045 1192 215 0 4 chr4 34304083 34304320 -149984342 + MER46A DNA MER2_type 1 236 0 1713 290 71 28 chr4 34304320 34304694 -149983968 - L1ME2 LINE L1 -1188 5045 4688 1984 130 0 13 chr4 34304694 34304995 -149983667 + AluSg SINE Alu 1 297 -13 1713 290 71 28 chr4 34304995 34305361 -149983301 - L1ME2 LINE L1 -1545 4688 4187 306 302 28 37 chr4 34305392 34305607 -149983055 - L1ME2 LINE L1 -2316 3899 3687 8507 122 18 0 chr4 34305680 34306932 -149981730 - HSMAR1 DNA Mariner -3 1284 11 301 300 82 24 chr4 34306969 34307139 -149981523 - L1ME2 LINE L1 -2620 3595 3416 950 163 0 0 chr4 34307242 34307389 -149981273 - AluSg/x SINE Alu -12 300 154 316 332 75 57 chr4 34307537 34307769 -149980893 - L1ME2 LINE L1 -4613 1783 1557 1710 190 0 0 chr4 34307769 34308058 -149980604 - AluSx SINE Alu -23 289 1 316 332 75 57 chr4 34308058 34309480 -149979182 - L1ME2 LINE L1 -4839 1557 100 1152 158 127 84 chr4 34310106 34310453 -149978209 + MSTA LTR MaLR 14 428 0 307 314 27 25 chr4 34312184 34312342 -149976320 + MIR SINE MIR 60 217 -45 2110 273 69 32 chr4 34313549 34313749 -149974913 - L1M1 LINE L1 -3953 3612 3421 249 33 0 0 chr4 34313749 34313779 -149974883 + (TG)n Simple_repeat Simple_repeat 1 30 0 2110 273 69 32 chr4 34313779 34314336 -149974326 - L1M1 LINE L1 -4144 3421 2886 212 0 36 0 chr4 34314336 34314364 -149974298 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2110 273 69 32 chr4 34314364 34315253 -149973409 - L1M1 LINE L1 -4679 2886 2097 1008 168 22 5 chr4 34315252 34315437 -149973225 - L1 LINE L1 -1906 4240 4053 * 1476 342 49 43 chr4 34315459 34316491 -149972171 - L1M1 LINE L1 -5241 2255 1217 1720 246 35 43 chr4 34318434 34318942 -149969720 + MER67D LTR ERV1 1 504 -10 424 263 26 64 chr4 34319371 34319527 -149969135 - MER69A DNA AcHobo -9 168 19 225 275 0 25 chr4 34319930 34320010 -149968652 + (TATATG)n Simple_repeat Simple_repeat 5 82 0 30 27 0 0 chr4 34320396 34320433 -149968229 + AT_rich Low_complexity Low_complexity 1 37 0 324 314 58 43 chr4 34320806 34320994 -149967668 + Charlie2 DNA MER1_type 26 216 -2566 186 167 0 0 chr4 34320995 34321031 -149967631 + (CATA)n Simple_repeat Simple_repeat 4 39 0 336 237 26 0 chr4 34321125 34321201 -149967461 + Charlie2 DNA MER1_type 1895 1972 -890 23 0 0 0 chr4 34321440 34321463 -149967199 + AT_rich Low_complexity Low_complexity 1 23 0 1193 173 90 12 chr4 34322352 34322644 -149966018 - L1MA4 LINE L1 -4 6296 5987 399 225 166 47 chr4 34322841 34323010 -149965652 - MIR SINE MIR -6 256 68 262 366 84 8 chr4 34323024 34323155 -149965507 + L2 LINE L2 3132 3272 0 32 43 0 0 chr4 34324818 34324864 -149963798 + AT_rich Low_complexity Low_complexity 1 46 0 31 88 0 0 chr4 34325081 34325161 -149963501 + AT_rich Low_complexity Low_complexity 1 80 0 1210 193 16 62 chr4 34325358 34325663 -149962999 - AluJo SINE Alu -10 302 12 22 0 0 0 chr4 34326139 34326161 -149962501 + AT_rich Low_complexity Low_complexity 1 22 0 1627 158 29 0 chr4 34326291 34326564 -149962098 + AluSx SINE Alu 21 301 -11 495 291 160 50 chr4 34326682 34327256 -149961406 - L1M4 LINE L1 -1397 4749 4113 39 65 0 28 chr4 34327360 34327467 -149961195 + AT_rich Low_complexity Low_complexity 1 104 0 294 193 36 72 chr4 34327591 34327674 -149960988 - MIR SINE MIR 0 262 183 42 0 0 0 chr4 34327923 34327965 -149960697 + AT_rich Low_complexity Low_complexity 1 42 0 652 329 68 49 chr4 34328059 34328773 -149959889 - L2 LINE L2 -8 3305 2577 272 138 58 23 chr4 34329005 34329092 -149959570 - L1MA7 LINE L1 -1 6290 6201 22 0 0 0 chr4 34329432 34329454 -149959208 + AT_rich Low_complexity Low_complexity 1 22 0 311 337 176 12 chr4 34329948 34330203 -149958459 + L2 LINE L2 2612 2908 -406 264 185 15 0 chr4 34330518 34330583 -149958079 - LTR66 LTR ERVL -151 459 394 234 274 0 0 chr4 34330583 34330634 -149958028 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 1938 122 0 17 chr4 34330643 34330930 -149957732 + AluSx SINE Alu 3 284 -28 210 34 51 51 chr4 34330987 34331046 -149957616 + (TA)n Simple_repeat Simple_repeat 1 59 0 22 56 0 0 chr4 34331064 34331100 -149957562 + AT_rich Low_complexity Low_complexity 1 36 0 32 26 0 0 chr4 34331435 34331474 -149957188 + AT_rich Low_complexity Low_complexity 1 39 0 33 85 0 0 chr4 34332221 34332303 -149956359 + AT_rich Low_complexity Low_complexity 1 82 0 389 251 148 6 chr4 34332467 34332650 -149956012 + L1MC3 LINE L1 5761 5967 -199 519 204 39 0 chr4 34332650 34332753 -149955909 + U6 snRNA snRNA 1 107 0 1391 108 99 14 chr4 34332780 34333002 -149955660 - AluSq SINE Alu -72 241 1 219 36 0 0 chr4 34333021 34333049 -149955613 + (A)n Simple_repeat Simple_repeat 1 28 0 365 228 140 52 chr4 34333066 34333202 -149955460 + L1ME1 LINE L1 5963 6110 -56 34 24 0 0 chr4 34333785 34333826 -149954836 + AT_rich Low_complexity Low_complexity 1 41 0 30 59 0 0 chr4 34334589 34334640 -149954022 + AT_rich Low_complexity Low_complexity 1 51 0 23 54 0 0 chr4 34335013 34335050 -149953612 + AT_rich Low_complexity Low_complexity 1 37 0 358 287 91 7 chr4 34335580 34335723 -149952939 + MIR SINE MIR 108 262 0 22 0 0 0 chr4 34335743 34335765 -149952897 + AT_rich Low_complexity Low_complexity 1 22 0 207 326 0 23 chr4 34335888 34335974 -149952688 + CT-rich Low_complexity Low_complexity 2 85 0 244 281 59 84 chr4 34337142 34337345 -149951317 + L2 LINE L2 2594 2791 -523 200 94 31 0 chr4 34337549 34337581 -149951081 + (CAGAA)n Simple_repeat Simple_repeat 4 36 0 259 231 0 0 chr4 34337869 34337921 -149950741 + MER94 DNA DNA 1 52 -82 920 321 76 49 chr4 34338158 34339549 -149949113 + L1MEc LINE L1 82 1510 -4886 1171 286 60 44 chr4 34339651 34340519 -149948143 + L1MEc LINE L1 2698 3579 -2636 308 311 22 0 chr4 34340586 34340766 -149947896 + MER20B DNA MER1_type 515 698 -85 1567 198 58 9 chr4 34341788 34342132 -149946530 + MER47A DNA MER2_type 6 366 0 692 231 71 123 chr4 34343044 34343149 -149945513 + MER57A LTR ERV1 43 152 -251 638 248 45 20 chr4 34343149 34343351 -149945311 - MER6B DNA MER2_type -3 207 1 692 231 71 123 chr4 34343351 34343626 -149945036 + MER57A LTR ERV1 152 403 0 200 132 26 0 chr4 34343865 34343903 -149944759 + A-rich Low_complexity Low_complexity 2 40 0 1632 163 37 37 chr4 34344685 34345060 -149943602 - THE1C LTR MaLR 0 375 1 205 330 38 57 chr4 34345477 34345686 -149942976 + L2 LINE L2 3047 3251 -62 9491 89 17 0 chr4 34346122 34348241 -149940421 + L1PA7 LINE L1 4012 6146 -8 41 58 0 0 chr4 34348617 34348686 -149939976 + AT_rich Low_complexity Low_complexity 1 69 0 222 278 62 62 chr4 34349001 34349145 -149939517 - MIR SINE MIR 0 262 119 238 238 124 21 chr4 34349152 34349345 -149939317 - MER97a DNA MER1_type? -23 871 659 196 224 0 24 chr4 34349451 34349536 -149939126 + (CATA)n Simple_repeat Simple_repeat 1 83 0 267 150 0 0 chr4 34349683 34349723 -149938939 - 5S rRNA rRNA -81 40 1 3901 177 8 18 chr4 34349723 34350357 -149938305 + L1PA15 LINE L1 4623 5262 -903 1792 123 64 131 chr4 34350357 34350540 -149938122 + THE1B LTR MaLR 1 146 -218 2197 114 0 0 chr4 34350540 34350829 -149937833 - AluY SINE Alu -22 289 1 1792 123 64 131 chr4 34350829 34351035 -149937627 + THE1B LTR MaLR 146 364 0 3901 177 8 18 chr4 34351035 34351248 -149937414 + L1PA15 LINE L1 5262 5476 -689 2872 138 4 17 chr4 34351248 34351712 -149936950 + LTR22A LTR ERVK 1 458 0 3901 177 8 18 chr4 34351712 34352172 -149936490 + L1PA15 LINE L1 5476 5918 -247 1776 139 7 4 chr4 34352172 34352452 -149936210 + L1PA15 LINE L1 5868 6148 -17 3878 16 0 2 chr4 34352453 34352898 -149935764 + L1PA3 LINE L1 5698 6141 -14 541 338 68 18 chr4 34353342 34353561 -149935101 + L2 LINE L2 2841 3070 -243 183 80 0 0 chr4 34353602 34353627 -149935035 + (T)n Simple_repeat Simple_repeat 1 25 0 6500 9 0 1 chr4 34353630 34354369 -149934293 - L1HS LINE L1 -5 6150 5413 385 313 103 15 chr4 34354370 34354565 -149934097 + L2 LINE L2 3100 3311 -2 269 312 77 12 chr4 34355067 34355237 -149933425 - L1ME LINE L1 -374 5747 5567 271 345 62 34 chr4 34355832 34355944 -149932718 + MIR SINE MIR 31 153 -109 1617 220 42 11 chr4 34355944 34356322 -149932340 + MLT1B LTR MaLR 1 390 0 271 345 62 34 chr4 34356322 34356418 -149932244 + MIR SINE MIR 153 245 -17 474 336 32 18 chr4 34356850 34357067 -149931595 - MIR SINE MIR -12 250 31 25 0 0 0 chr4 34357201 34357226 -149931436 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 34357951 34357973 -149930689 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 34358048 34358076 -149930586 + AT_rich Low_complexity Low_complexity 1 28 0 2156 203 115 8 chr4 34358743 34359240 -149929422 + MER44D DNA MER2_type 1 605 0 1066 141 17 167 chr4 34359741 34360040 -149928622 - L1PA16 LINE L1 -19 6147 5894 284 290 10 0 chr4 34360150 34360250 -149928412 + (TA)n Simple_repeat Simple_repeat 1 101 0 180 152 0 0 chr4 34360270 34360303 -149928359 + GA-rich Low_complexity Low_complexity 1 33 0 279 315 11 22 chr4 34360713 34360805 -149927857 + L2 LINE L2 3181 3271 -1 335 231 154 0 chr4 34361411 34361515 -149927147 + LTR40a LTR ERVL 14 133 -386 2166 183 58 2 chr4 34361516 34361932 -149926730 - Tigger2 DNA MER2_type 0 2718 2280 271 186 51 17 chr4 34361936 34361995 -149926667 - Tigger2 DNA MER2_type -2657 61 1 925 247 120 29 chr4 34362050 34362358 -149926304 + LTR40a LTR ERVL 182 517 -2 22 0 0 0 chr4 34363068 34363090 -149925572 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 34363350 34363375 -149925287 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr4 34363526 34363554 -149925108 + AT_rich Low_complexity Low_complexity 1 28 0 311 325 8 0 chr4 34363653 34363773 -149924889 + L1MEc LINE L1 2194 2314 -4082 4525 213 139 32 chr4 34363806 34365253 -149923409 - MER52A LTR ERV1 0 1755 1 501 286 61 81 chr4 34365906 34366051 -149922611 + L1MEc LINE L1 2669 2815 -3400 1624 188 3 3 chr4 34366051 34366367 -149922295 + AluJb SINE Alu 2 317 0 501 286 61 81 chr4 34366367 34366765 -149921897 + L1MEc LINE L1 2815 3202 -3013 1122 203 173 16 chr4 34366822 34367128 -149921534 + MLT1A1 LTR MaLR 1 354 -11 227 244 0 22 chr4 34367605 34367650 -149921012 + MLT1E2 LTR MaLR 1 44 -610 2168 144 8 27 chr4 34367654 34368023 -149920639 - THE1B LTR MaLR 0 364 3 9677 114 76 3 chr4 34368025 34369497 -149919165 - THE1B-int LTR MaLR 0 1580 2 2166 132 27 30 chr4 34369498 34369863 -149918799 - THE1B LTR MaLR 0 364 1 295 182 91 39 chr4 34369872 34369949 -149918713 + MLT1E2 LTR MaLR 87 167 -457 1452 276 31 5 chr4 34369977 34370361 -149918301 + MLT1E2 LTR MaLR 233 626 0 240 216 52 21 chr4 34370361 34370458 -149918204 + L1MEc LINE L1 3727 3826 -2389 189 347 65 16 chr4 34371026 34371150 -149917512 + L2 LINE L2 3179 3308 -5 185 269 19 0 chr4 34372691 34372743 -149915919 + L2 LINE L2 3261 3313 0 276 282 8 76 chr4 34373304 34373382 -149915280 - MIR SINE MIR -100 162 95 1626 209 33 17 chr4 34373382 34373741 -149914921 + MLT1A1 LTR MaLR 1 365 0 276 282 8 76 chr4 34373741 34373793 -149914869 - MIR SINE MIR -167 95 41 726 229 6 0 chr4 34373873 34374048 -149914614 - L1MB4 LINE L1 -1 6179 6004 22 0 0 0 chr4 34374246 34374268 -149914394 + AT_rich Low_complexity Low_complexity 1 22 0 358 293 48 29 chr4 34374497 34374770 -149913892 - L1MEd LINE L1 -4975 1144 867 419 365 84 59 chr4 34374798 34375195 -149913467 - L1MEd LINE L1 -5300 819 433 372 43 0 0 chr4 34375195 34375241 -149913421 + (TG)n Simple_repeat Simple_repeat 2 47 0 419 365 84 59 chr4 34375241 34375641 -149913021 - L1MEd LINE L1 -5686 433 2 295 247 195 45 chr4 34376351 34376505 -149912157 + MIR SINE MIR 56 232 -30 32 43 0 0 chr4 34376584 34376630 -149912032 + AT_rich Low_complexity Low_complexity 1 46 0 228 67 0 0 chr4 34376903 34376933 -149911729 + (TG)n Simple_repeat Simple_repeat 1 30 0 215 311 16 0 chr4 34377033 34377094 -149911568 + L2 LINE L2 3211 3272 0 1814 182 42 37 chr4 34377836 34378265 -149910397 + L1MA7 LINE L1 5855 6285 -6 271 288 136 41 chr4 34378307 34378769 -149909893 + HAL1 LINE L1 2002 2507 0 305 314 32 52 chr4 34379282 34379530 -149909132 - HAL1 LINE L1 -785 1722 1480 457 355 94 58 chr4 34379658 34380092 -149908570 - HAL1 LINE L1 -1443 1064 615 3849 163 12 32 chr4 34380099 34380824 -149907838 + MER50 LTR ERV1 1 711 -23 2483 214 18 32 chr4 34381474 34382036 -149906626 + MER41C LTR ERV1 1 554 0 1128 265 78 51 chr4 34382379 34382507 -149906155 + MLT2B1 LTR ERVL 1 124 -396 1576 177 53 31 chr4 34382507 34382863 -149905799 - THE1B LTR MaLR 0 364 1 1128 265 78 51 chr4 34382863 34383168 -149905494 + MLT2B1 LTR ERVL 124 446 -74 14020 45 1 1 chr4 34383182 34385697 -149902965 - L1PA5 LINE L1 0 6154 3635 13543 53 1 1 chr4 34385697 34387435 -149901227 + L1P LINE L1 1934 3672 -2474 251 255 0 0 chr4 34387452 34387503 -149901159 + CT-rich Low_complexity Low_complexity 3 53 0 21 0 0 0 chr4 34387590 34387611 -149901051 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr4 34388951 34388987 -149899675 + AT_rich Low_complexity Low_complexity 1 36 0 2008 164 44 54 chr4 34389153 34389581 -149899081 - Tigger2a DNA MER2_type 0 434 11 23 92 0 0 chr4 34390022 34390087 -149898575 + AT_rich Low_complexity Low_complexity 1 65 0 25 0 0 0 chr4 34390709 34390734 -149897928 + AT_rich Low_complexity Low_complexity 1 25 0 323 153 76 23 chr4 34390813 34390989 -149897673 + (TA)n Simple_repeat Simple_repeat 1 185 0 27 29 0 0 chr4 34391108 34391142 -149897520 + AT_rich Low_complexity Low_complexity 1 34 0 849 275 35 6 chr4 34391568 34391884 -149896778 + L1 LINE L1 2849 3173 -2973 27 0 0 0 chr4 34391971 34391998 -149896664 + AT_rich Low_complexity Low_complexity 1 27 0 29 28 0 0 chr4 34392348 34392384 -149896278 + AT_rich Low_complexity Low_complexity 1 36 0 30 93 0 0 chr4 34392687 34392773 -149895889 + AT_rich Low_complexity Low_complexity 1 86 0 334 239 45 11 chr4 34393045 34393133 -149895529 + LTR33 LTR ERVL 429 519 -2 42 57 0 0 chr4 34395491 34395561 -149893101 + AT_rich Low_complexity Low_complexity 1 70 0 313 143 0 0 chr4 34396579 34396628 -149892034 - MLT2D LTR ERVL 0 414 366 1660 231 55 30 chr4 34396655 34397127 -149891535 + MER76 LTR ERV 205 688 0 193 404 60 48 chr4 34397404 34397738 -149890924 - L2 LINE L2 -2 3270 2933 276 368 37 7 chr4 34398037 34398173 -149890489 + MER5B DNA MER1_type 2 141 -37 41 58 0 0 chr4 34399082 34399151 -149889511 + AT_rich Low_complexity Low_complexity 1 69 0 1121 271 103 41 chr4 34399442 34400025 -149888637 + MLT1E3 LTR MaLR 5 623 -1 692 278 6 6 chr4 34401445 34401625 -149887037 + MLT1E2 LTR MaLR 15 194 -432 3706 217 25 41 chr4 34401626 34401759 -149886903 + L1 LINE L1 3212 3346 -2800 1566 213 3 0 chr4 34401759 34402055 -149886607 + AluJo SINE Alu 13 309 -3 3706 217 25 41 chr4 34402055 34402906 -149885756 + L1 LINE L1 3346 4181 -1965 1327 248 90 11 chr4 34402906 34403285 -149885377 + MLT1E2 LTR MaLR 218 626 0 180 0 0 0 chr4 34403383 34403403 -149885259 + (T)n Simple_repeat Simple_repeat 1 20 0 215 269 0 0 chr4 34403940 34403992 -149884670 + CT-rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr4 34404570 34404591 -149884071 + AT_rich Low_complexity Low_complexity 1 21 0 2069 157 86 5 chr4 34405127 34405523 -149883139 - MSTA LTR MaLR 0 428 1 247 367 47 70 chr4 34406770 34406898 -149881764 + L2 LINE L2 3143 3267 -5 3424 75 5 0 chr4 34407677 34408254 -149880408 - L1PA6 LINE L1 -451 5703 5125 3290 89 0 2 chr4 34408254 34408690 -149879972 + L1PA6 LINE L1 5696 6143 -11 801 266 114 4 chr4 34408932 34409195 -149879467 - LTR41 LTR ERVL -470 303 12 23 68 0 0 chr4 34409626 34409670 -149878992 + AT_rich Low_complexity Low_complexity 1 44 0 29 0 0 0 chr4 34409761 34409790 -149878872 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr4 34409899 34409930 -149878732 + AT_rich Low_complexity Low_complexity 1 31 0 2582 140 0 64 chr4 34412620 34413205 -149875457 - MER1A DNA MER1_type -5 524 1 220 378 12 12 chr4 34413595 34413677 -149874985 + L2 LINE L2 2895 2976 -338 313 230 159 18 chr4 34413780 34413893 -149874769 + L2 LINE L2 3137 3265 -7 4462 165 34 21 chr4 34414291 34415175 -149873487 - L1PB4 LINE L1 -3 6468 5574 * 11703 129 18 62 chr4 34415153 34418154 -149870508 - L1PB4 LINE L1 -3487 2974 1 1323 290 41 13 chr4 34418160 34419113 -149869549 - L1ME LINE L1 -400 5766 4796 1453 181 105 14 chr4 34419120 34419473 -149869189 - L1MA4 LINE L1 -1 6299 5915 594 203 0 8 chr4 34419475 34419593 -149869069 - L1MA10 LINE L1 -9 6325 6209 * 3243 182 45 56 chr4 34419587 34420410 -149868252 - L1MB1 LINE L1 -8 6160 5347 744 277 70 34 chr4 34420409 34420824 -149867838 - L1MB1 LINE L1 -1833 4313 3884 * 1061 311 54 62 chr4 34420859 34421490 -149867172 - MLT1E2 LTR MaLR 0 626 1 719 267 37 32 chr4 34421730 34422105 -149866557 + L1MEc LINE L1 1913 2289 -4107 852 271 39 9 chr4 34422105 34422334 -149866328 + MSTD LTR MaLR 161 396 0 180 0 0 0 chr4 34423269 34423289 -149865373 + (CAT)n Simple_repeat Simple_repeat 1 20 0 285 280 0 0 chr4 34423330 34423405 -149865257 + (AAGTG)n Simple_repeat Simple_repeat 3 77 0 186 143 0 0 chr4 34423798 34423833 -149864829 + (TAA)n Simple_repeat Simple_repeat 2 36 0 28 0 0 0 chr4 34423871 34423899 -149864763 + AT_rich Low_complexity Low_complexity 1 28 0 1727 105 19 8 chr4 34424267 34424534 -149864128 + AluSx SINE Alu 36 305 -7 182 194 0 0 chr4 34424732 34424763 -149863899 + L2 LINE L2 2220 2250 -1064 25 51 0 0 chr4 34424834 34424873 -149863789 + AT_rich Low_complexity Low_complexity 1 39 0 864 345 69 35 chr4 34427509 34428049 -149860613 - L2 LINE L2 0 3313 2756 2165 97 7 3 chr4 34428120 34428419 -149860243 + AluSx SINE Alu 1 300 -12 212 407 12 12 chr4 34428569 34428731 -149859931 + L2 LINE L2 3145 3306 -7 884 228 9 26 chr4 34428949 34429177 -149859485 - MER58A DNA MER1_type 0 224 1 359 228 69 30 chr4 34432303 34432404 -149856258 + MIR SINE MIR 127 231 -31 230 272 130 11 chr4 34432522 34432614 -149856048 + L2 LINE L2 3117 3219 -94 2753 108 49 5 chr4 34433399 34433784 -149854878 + MLT2A1 LTR ERVL 1 408 -36 243 0 0 0 chr4 34433784 34433811 -149854851 + (CA)n Simple_repeat Simple_repeat 2 28 0 2753 108 49 5 chr4 34433811 34433850 -149854812 + MLT2A1 LTR ERVL 408 444 0 1728 147 41 75 chr4 34433885 34434098 -149854564 - THE1C LTR MaLR 0 375 179 5017 67 5 0 chr4 34434098 34434753 -149853909 - L1PA7 LINE L1 -2 6152 5495 1728 147 41 75 chr4 34434753 34434927 -149853735 - THE1C LTR MaLR -196 179 1 1061 242 46 0 chr4 34435187 34435427 -149853235 - MLT1C LTR MaLR -2 465 215 206 0 0 65 chr4 34435995 34436026 -149852636 + (TTTTTA)n Simple_repeat Simple_repeat 4 32 0 27 49 0 0 chr4 34436103 34436144 -149852518 + AT_rich Low_complexity Low_complexity 1 41 0 1723 166 6 35 chr4 34436176 34436490 -149852172 + AluSx SINE Alu 1 305 -7 180 188 43 0 chr4 34437977 34438046 -149850616 + (TA)n Simple_repeat Simple_repeat 2 73 0 2224 118 0 0 chr4 34438094 34438398 -149850264 + AluSx SINE Alu 1 304 -8 1224 218 112 29 chr4 34438783 34439123 -149849539 - MLT1B LTR MaLR -2 388 21 27 0 0 0 chr4 34439512 34439539 -149849123 + AT_rich Low_complexity Low_complexity 1 27 0 1860 53 68 34 chr4 34440670 34440934 -149847728 + AluY SINE Alu 37 309 -2 33 73 0 0 chr4 34442151 34442219 -149846443 + AT_rich Low_complexity Low_complexity 1 68 0 417 287 15 46 chr4 34442219 34442414 -149846248 + L1MD2 LINE L1 4843 5031 -1115 8499 116 12 22 chr4 34442422 34442513 -149846149 + HSMAR1 DNA Mariner 9 99 -1188 1896 150 3 13 chr4 34442513 34442819 -149845843 - AluSx SINE Alu -4 308 6 8499 116 12 22 chr4 34442819 34444019 -149844643 + HSMAR1 DNA Mariner 99 1287 0 1018 260 85 9 chr4 34444028 34445007 -149843655 + L1MD2 LINE L1 5039 6142 -22 25 0 0 0 chr4 34445036 34445061 -149843601 + AT_rich Low_complexity Low_complexity 1 25 0 232 263 88 0 chr4 34446162 34446219 -149842443 + L2 LINE L2 3211 3272 0 264 303 20 0 chr4 34446623 34446722 -149841940 - L1M4 LINE L1 -1563 4583 4483 23 54 0 0 chr4 34446810 34446847 -149841815 + AT_rich Low_complexity Low_complexity 1 37 0 314 307 0 0 chr4 34447411 34447499 -149841163 + MIR SINE MIR 175 262 0 2230 119 0 0 chr4 34447820 34448132 -149840530 + AluSx SINE Alu 1 312 0 571 283 67 0 chr4 34448275 34448455 -149840207 + MIR SINE MIR 50 241 -21 23 54 0 0 chr4 34448903 34448940 -149839722 + AT_rich Low_complexity Low_complexity 1 37 0 24 53 0 0 chr4 34449084 34449122 -149839540 + AT_rich Low_complexity Low_complexity 1 38 0 455 312 83 25 chr4 34449266 34449628 -149839034 - L1M4 LINE L1 -3094 3052 2670 2406 204 2 8 chr4 34449630 34450111 -149838551 - L1PA16 LINE L1 0 6166 5689 2540 138 20 20 chr4 34450112 34450596 -149838066 + L1PA16 LINE L1 5217 5700 -466 2241 78 0 0 chr4 34451784 34452100 -149836562 + AluY SINE Alu 1 316 0 259 200 0 0 chr4 34452260 34452320 -149836342 + L1MC4 LINE L1 6644 6703 -1339 554 298 75 4 chr4 34452723 34452951 -149835711 - MLT1J LTR MaLR -267 244 1 2016 112 3 7 chr4 34452951 34453264 -149835398 - AluSx SINE Alu 0 312 1 233 214 125 0 chr4 34453691 34453747 -149834915 - L2 LINE L2 -61 3252 3190 272 341 96 7 chr4 34453748 34453883 -149834779 - L3 LINE CR1 -5 1572 1426 648 356 40 21 chr4 34454252 34454631 -149834031 - L3 LINE CR1 -151 1426 1041 2335 58 3 29 chr4 34455894 34456205 -149832457 + AluY SINE Alu 1 303 -8 4069 190 7 28 chr4 34456205 34456229 -149832433 + L1PB4 LINE L1 5322 5345 -811 3344 85 22 30 chr4 34456229 34456733 -149831929 - L1PA10 LINE L1 -1 6167 5668 4069 190 7 28 chr4 34456733 34457556 -149831106 + L1PB4 LINE L1 5345 6151 -5 1175 305 77 7 chr4 34457893 34458461 -149830201 + MLT1E LTR MaLR 3 593 0 1384 215 203 6 chr4 34458968 34459317 -149829345 - MER47B DNA MER2_type 0 418 1 1651 187 3 13 chr4 34463460 34463775 -149824887 - AluJo SINE Alu 0 312 1 23 33 0 0 chr4 34464538 34464568 -149824094 + AT_rich Low_complexity Low_complexity 1 30 0 2311 97 0 3 chr4 34464673 34464983 -149823679 - AluSc SINE Alu 0 309 1 28 48 0 0 chr4 34465598 34465640 -149823022 + AT_rich Low_complexity Low_complexity 1 42 0 212 301 186 26 chr4 34465858 34465971 -149822691 + MIR SINE MIR 21 151 -57 721 237 16 31 chr4 34466804 34466998 -149821664 - MER3 DNA MER1_type -12 197 7 241 309 84 91 chr4 34467362 34467950 -149820712 - L2 LINE L2 -524 2790 2205 2285 100 3 0 chr4 34467950 34468260 -149820402 + AluSx SINE Alu 1 311 -1 241 309 84 91 chr4 34468260 34468301 -149820361 - L2 LINE L2 -1109 2205 2165 1972 148 0 0 chr4 34468440 34468737 -149819925 - AluSq SINE Alu -16 297 1 188 146 0 21 chr4 34468775 34468823 -149819839 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 1227 176 0 42 chr4 34470562 34470800 -149817862 + AluJb SINE Alu 83 310 -2 651 21 32 11 chr4 34471797 34471890 -149816772 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 22 0 0 0 chr4 34472242 34472264 -149816398 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr4 34472798 34472834 -149815828 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr4 34473175 34473197 -149815465 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 34473421 34473444 -149815218 + AT_rich Low_complexity Low_complexity 1 23 0 1064 133 79 49 chr4 34473596 34473799 -149814863 + Tigger2a DNA MER2_type 5 213 -221 4433 211 19 2 chr4 34473847 34475190 -149813472 + L1PA16 LINE L1 3981 5449 -717 1510 166 100 31 chr4 34475190 34475540 -149813122 - THE1C LTR MaLR 0 375 2 3746 154 52 20 chr4 34475540 34476230 -149812432 + L1PA16 LINE L1 5444 6155 -11 266 314 17 25 chr4 34477922 34478040 -149810622 - MLT1J1 LTR MaLR -329 117 1 24 53 0 0 chr4 34478120 34478158 -149810504 + AT_rich Low_complexity Low_complexity 1 38 0 1035 290 37 47 chr4 34478666 34479070 -149809592 + MLT1E2 LTR MaLR 1 400 -226 676 52 21 0 chr4 34479070 34479166 -149809496 + AluY SINE Alu 204 301 -10 919 224 14 29 chr4 34479189 34479399 -149809263 + MLT1E2 LTR MaLR 414 620 -6 28 29 0 0 chr4 34479956 34479991 -149808671 + AT_rich Low_complexity Low_complexity 1 35 0 256 213 53 27 chr4 34480782 34480857 -149807805 - L1MC4 LINE L1 -1136 6702 6573 2861 13 0 0 chr4 34481522 34481839 -149806823 - AluYb8 SINE Alu -1 317 1 36 0 0 0 chr4 34483016 34483052 -149805610 + AT_rich Low_complexity Low_complexity 1 36 0 435 38 0 0 chr4 34483280 34483333 -149805329 + (TA)n Simple_repeat Simple_repeat 2 54 0 207 329 0 66 chr4 34483508 34483584 -149805078 + L2 LINE L2 3199 3269 -3 404 310 89 71 chr4 34484839 34485564 -149803098 + L1M4 LINE L1 2830 3597 -2549 848 253 146 61 chr4 34485564 34486006 -149802656 + MLT2B1 LTR ERVL 2 489 -31 285 29 0 0 chr4 34486006 34486040 -149802622 + (CA)n Simple_repeat Simple_repeat 1 34 0 848 253 146 61 chr4 34486040 34486075 -149802587 + MLT2B1 LTR ERVL 489 520 0 404 310 89 71 chr4 34486075 34486269 -149802393 + L1M4 LINE L1 3597 3786 -2360 2618 265 37 39 chr4 34486284 34486839 -149801823 + L1MC4 LINE L1 7004 7559 -483 1787 149 0 31 chr4 34486839 34487127 -149801535 + AluSg SINE Alu 1 279 -31 207 0 0 0 chr4 34487130 34487153 -149801509 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2618 265 37 39 chr4 34487153 34487632 -149801030 + L1MC4 LINE L1 7561 8040 -2 1738 54 0 14 chr4 34487933 34488187 -149800475 + AluY SINE Alu 66 316 0 1927 194 48 139 chr4 34488338 34488941 -149799721 - MER21A LTR ERV1 -25 906 380 2419 70 0 10 chr4 34488941 34489255 -149799407 + AluY SINE Alu 1 311 0 1927 194 48 139 chr4 34489255 34489383 -149799279 - MER21A LTR ERV1 -551 380 242 905 176 16 106 chr4 34489383 34489628 -149799034 + LTR9 LTR ERV1 1 223 -389 667 68 0 0 chr4 34489628 34489716 -149798946 - AluSg/x SINE Alu -13 299 212 281 376 15 8 chr4 34489746 34489879 -149798783 + MER61E LTR ERV1 211 344 -225 * 700 216 112 43 chr4 34489871 34490149 -149798513 + LTR9 LTR ERV1 316 612 0 729 174 0 0 chr4 34490150 34490265 -149798397 - MER39 LTR ERV1 -334 373 259 547 124 7 163 chr4 34490240 34490393 -149798269 - MER21A LTR ERV1 -733 198 70 * 384 279 21 20 chr4 34490510 34490668 -149797994 + L1ME3 LINE L1 5973 6138 -24 21 0 0 0 chr4 34490944 34490965 -149797697 + AT_rich Low_complexity Low_complexity 1 21 0 2065 74 0 4 chr4 34491969 34492239 -149796423 - AluY SINE Alu -6 305 37 2155 201 111 18 chr4 34493364 34493831 -149794831 + MLT2B3 LTR ERVL 1 520 -34 387 0 0 0 chr4 34493831 34493874 -149794788 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 2155 201 111 18 chr4 34493874 34493913 -149794749 + MLT2B3 LTR ERVL 520 554 0 436 163 0 0 chr4 34494443 34494523 -149794139 - MADE1 DNA Mariner 0 80 1 18338 118 8 14 chr4 34495585 34498858 -149789804 + L1PA7 LINE L1 727 3999 -2462 9674 103 12 1 chr4 34498866 34501076 -149787586 + L1PA7 LINE L1 4243 6469 0 23 54 0 0 chr4 34501920 34501957 -149786705 + AT_rich Low_complexity Low_complexity 1 37 0 224 71 48 0 chr4 34503438 34503480 -149785182 + T-rich Low_complexity Low_complexity 2 45 0 1540 165 4 0 chr4 34503506 34503749 -149784913 - AluSx SINE Alu -66 246 3 22 0 0 0 chr4 34503760 34503782 -149784880 + AT_rich Low_complexity Low_complexity 1 22 0 299 225 25 0 chr4 34505614 34505694 -149782968 + (TA)n Simple_repeat Simple_repeat 2 83 0 12808 170 25 6 chr4 34505694 34508066 -149780596 + Tigger1 DNA MER2_type 1 2418 0 32 43 0 0 chr4 34508384 34508430 -149780232 + AT_rich Low_complexity Low_complexity 1 46 0 32 26 0 0 chr4 34509907 34509946 -149778716 + AT_rich Low_complexity Low_complexity 1 39 0 1379 210 0 41 chr4 34510550 34510880 -149777782 + AluJo SINE Alu 4 321 0 1778 167 7 0 chr4 34511003 34511309 -149777353 + AluSx SINE Alu 1 308 0 270 418 46 8 chr4 34511983 34512222 -149776440 + MIR SINE MIR 3 250 -12 1769 88 0 0 chr4 34512329 34512557 -149776105 - AluSg/x SINE Alu -4 306 79 180 111 0 0 chr4 34513201 34513228 -149775434 + (T)n Simple_repeat Simple_repeat 1 27 0 204 418 11 0 chr4 34513601 34513692 -149774970 - L2 LINE L2 -331 2982 2891 1096 238 43 68 chr4 34514159 34514481 -149774181 - MLT1D LTR MaLR -13 492 163 2218 108 3 0 chr4 34514481 34514776 -149773886 + AluSg SINE Alu 1 296 -14 1096 238 43 68 chr4 34514776 34514802 -149773860 - MLT1D LTR MaLR -342 163 138 240 35 0 0 chr4 34514802 34514831 -149773831 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 1096 238 43 68 chr4 34514831 34515005 -149773657 - MLT1D LTR MaLR -367 138 1 202 154 0 26 chr4 34515058 34515097 -149773565 + (TAA)n Simple_repeat Simple_repeat 2 39 0 223 351 9 35 chr4 34516264 34516378 -149772284 - L2 LINE L2 -7 3265 3155 202 345 51 51 chr4 34516992 34517046 -149771616 + L2 LINE L2 926 979 -2335 2032 103 23 20 chr4 34517046 34517347 -149771315 - AluSq SINE Alu -11 302 1 202 345 51 51 chr4 34517347 34517474 -149771188 + L2 LINE L2 979 1110 -2204 225 0 0 0 chr4 34517474 34517499 -149771163 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 202 345 51 51 chr4 34517499 34517513 -149771149 + L2 LINE L2 1109 1122 -2192 306 237 93 21 chr4 34517895 34517992 -149770670 - L1M4 LINE L1 -3008 3138 3035 235 329 0 24 chr4 34518353 34518435 -149770227 - L2 LINE L2 -746 2568 2489 2463 171 17 28 chr4 34518528 34518997 -149769665 - MER31A LTR ERV1 0 485 22 391 200 13 0 chr4 34519000 34519075 -149769587 + MER31A LTR ERV1 410 485 0 1711 142 4 8 chr4 34519626 34519886 -149768776 + AluSq SINE Alu 2 260 -53 243 0 0 0 chr4 34519912 34519939 -149768723 + (CA)n Simple_repeat Simple_repeat 2 28 0 2319 138 45 24 chr4 34519955 34520374 -149768288 + MSTA LTR MaLR 1 428 0 26 50 0 0 chr4 34520488 34520528 -149768134 + AT_rich Low_complexity Low_complexity 1 40 0 568 278 123 71 chr4 34520528 34520952 -149767710 - MLT1H LTR MaLR 0 549 104 23 0 0 0 chr4 34520988 34521011 -149767651 + AT_rich Low_complexity Low_complexity 1 23 0 23 86 0 0 chr4 34521293 34521351 -149767311 + AT_rich Low_complexity Low_complexity 1 58 0 2077 184 29 24 chr4 34522217 34522635 -149766027 + MSTB LTR MaLR 1 420 -6 1201 230 93 93 chr4 34522696 34523284 -149765378 + MLT1E2 LTR MaLR 59 622 -4 1452 188 63 28 chr4 34524613 34524975 -149763687 - THE1C LTR MaLR 0 375 1 8289 205 36 39 chr4 34524981 34526560 -149762102 - THE1C-int LTR MaLR -6 1574 1 478 129 0 0 chr4 34526560 34526630 -149762032 - THE1C LTR MaLR 0 375 306 1079 169 11 0 chr4 34526651 34526835 -149761827 - THE1C LTR MaLR -187 188 3 2231 223 39 4 chr4 34527565 34528058 -149760604 - LTR53 LTR ERVL 0 519 10 236 191 96 78 chr4 34528530 34528645 -149760017 + MIR SINE MIR 105 221 -41 1691 132 114 0 chr4 34528832 34529104 -149759558 + AluSx SINE Alu 1 303 -9 372 103 13 39 chr4 34529129 34529207 -149759455 + (GAAA)n Simple_repeat Simple_repeat 1 76 0 553 333 98 20 chr4 34529649 34530100 -149758562 - MLT1H1 LTR MaLR -33 522 37 5548 157 27 12 chr4 34530897 34531971 -149756691 - L1MA4A LINE L1 -6 6297 5207 313 279 0 0 chr4 34532521 34532600 -149756062 + L1MC4 LINE L1 6624 6702 -1340 330 154 39 0 chr4 34532605 34532683 -149755979 + (TA)n Simple_repeat Simple_repeat 1 81 0 321 311 46 89 chr4 34532867 34533282 -149755380 + L1M2 LINE L1 1008 1404 -5445 2356 72 7 0 chr4 34533848 34534141 -149754521 - AluY SINE Alu -16 295 1 1561 201 3 26 chr4 34535280 34535588 -149753074 - AluJo SINE Alu -11 301 1 271 374 50 0 chr4 34536079 34536258 -149752404 - MIR SINE MIR -1 261 74 2410 66 3 3 chr4 34536659 34536964 -149751698 + AluY SINE Alu 1 305 -6 999 228 50 0 chr4 34536964 34537205 -149751457 - L1MA6 LINE L1 -14 6286 6034 648 250 11 22 chr4 34537199 34537383 -149751279 - L1M2a LINE L1 -6984 184 3 * 240 319 57 43 chr4 34537569 34537710 -149750952 + MLT1I LTR MaLR 1 143 -266 728 278 27 36 chr4 34538740 34538963 -149749699 + MER58A DNA MER1_type 2 222 -2 324 303 5 96 chr4 34538998 34539216 -149749446 + MIR SINE MIR 63 260 -2 219 139 0 0 chr4 34539317 34539353 -149749309 + (CA)n Simple_repeat Simple_repeat 1 36 0 2746 28 0 3 chr4 34539482 34539806 -149748856 + L1PA2 LINE L1 5827 6149 -6 282 270 0 14 chr4 34541699 34541773 -149746889 + MER94 DNA DNA 39 111 -23 1418 103 0 77 chr4 34542654 34542904 -149745758 + L1PA13 LINE L1 5919 6150 -13 2688 35 0 0 chr4 34542904 34543214 -149745448 + AluY SINE Alu 1 310 -1 801 248 57 30 chr4 34544848 34545078 -149743584 - MIR SINE MIR -26 236 1 1899 103 60 21 chr4 34545702 34545983 -149742679 - AluSx SINE Alu -12 300 9 192 77 0 0 chr4 34547922 34547948 -149740714 + (CA)n Simple_repeat Simple_repeat 2 27 0 25 51 0 0 chr4 34548306 34548345 -149740317 + AT_rich Low_complexity Low_complexity 1 39 0 1211 123 0 0 chr4 34548377 34548548 -149740114 + AluSp SINE Alu 137 307 -6 56 33 0 0 chr4 34548947 34549007 -149739655 + AT_rich Low_complexity Low_complexity 1 60 0 10281 65 6 0 chr4 34549107 34550379 -149738283 - HERVL LTR ERVL -684 4970 3691 470 114 71 0 chr4 34550379 34550449 -149738213 - THE1B LTR MaLR -289 75 1 10922 115 13 0 chr4 34550449 34552009 -149736653 - THE1B-int LTR MaLR 0 1580 1 2152 142 19 27 chr4 34552009 34552376 -149736286 - THE1B LTR MaLR 0 364 1 290 242 141 31 chr4 34552395 34552523 -149736139 + L1MCa LINE L1 190 331 -6233 * 574 280 110 79 chr4 34552496 34552850 -149735812 + L1MCa LINE L1 201 565 -5480 1378 240 36 65 chr4 34552961 34553763 -149734899 + L1MCa LINE L1 570 1367 -4852 210 279 15 15 chr4 34554478 34554546 -149734116 + L2 LINE L2 3014 3081 -191 22 35 0 0 chr4 34554706 34554735 -149733927 + AT_rich Low_complexity Low_complexity 1 29 0 199 278 74 65 chr4 34555351 34555459 -149733203 + MIR SINE MIR 122 230 -32 299 293 45 45 chr4 34555652 34555785 -149732877 + MIR SINE MIR 2 134 -128 194 344 16 0 chr4 34555803 34555864 -149732798 + L2 LINE L2 3251 3312 -1 32 0 0 0 chr4 34556037 34556069 -149732593 + AT_rich Low_complexity Low_complexity 1 32 0 2002 126 67 19 chr4 34558440 34558813 -149729849 - L1MA4 LINE L1 -381 5919 5529 27 62 0 0 chr4 34558984 34559032 -149729630 + AT_rich Low_complexity Low_complexity 1 48 0 1137 152 0 0 chr4 34559259 34559437 -149729225 + AluSg/x SINE Alu 134 311 -1 1915 188 38 2 chr4 34560071 34560471 -149728191 + L1MA4A LINE L1 5884 6297 -6 352 309 124 9 chr4 34560925 34561142 -149727520 + MIR SINE MIR 20 261 -1 1045 241 67 19 chr4 34561179 34561494 -149727168 - MER58B DNA MER1_type -8 333 4 410 374 19 7 chr4 34561742 34561897 -149726765 + L2 LINE L2 3116 3272 0 205 244 0 0 chr4 34563900 34563945 -149724717 + (CA)n Simple_repeat Simple_repeat 2 46 0 2146 73 4 0 chr4 34565126 34565422 -149723240 + AluY SINE Alu 9 305 0 2189 84 0 20 chr4 34566288 34566587 -149722075 - AluSc SINE Alu -11 298 6 197 389 43 32 chr4 34566942 34567127 -149721535 + MIR3 SINE MIR 17 203 -5 333 270 112 56 chr4 34568104 34568282 -149720380 - MLT1J LTR MaLR -304 207 20 1062 216 30 17 chr4 34568562 34568683 -149719979 + AluSx SINE Alu 3 121 -181 387 0 0 0 chr4 34568683 34568726 -149719936 + (TTAA)n Simple_repeat Simple_repeat 3 45 0 1062 216 30 17 chr4 34568726 34568900 -149719762 + AluSx SINE Alu 121 302 0 212 310 53 71 chr4 34569523 34569636 -149719026 + L2 LINE L2 1078 1188 -2126 439 353 148 36 chr4 34569742 34570908 -149717754 + L2 LINE L2 1367 2662 -652 286 385 61 29 chr4 34570923 34571201 -149717461 - MLT1I LTR MaLR -6 403 117 2175 60 14 3 chr4 34572478 34572761 -149715901 - AluY SINE Alu -25 286 1 213 352 0 29 chr4 34572763 34572868 -149715794 - MIR SINE MIR -20 242 141 778 271 106 41 chr4 34573243 34573657 -149715005 + MSTB2 LTR MaLR 17 457 0 26 0 0 0 chr4 34573992 34574018 -149714644 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr4 34574045 34574067 -149714595 + AT_rich Low_complexity Low_complexity 1 22 0 204 298 0 24 chr4 34574711 34574795 -149713867 + T-rich Low_complexity Low_complexity 1 82 0 281 335 85 30 chr4 34575045 34575245 -149713417 - MIR SINE MIR 0 262 52 1618 227 12 9 chr4 34575610 34575949 -149712713 - MER2 DNA MER2_type 0 345 6 345 82 0 0 chr4 34575952 34576001 -149712661 + (TG)n Simple_repeat Simple_repeat 2 50 0 24 0 0 0 chr4 34577944 34577968 -149710694 + AT_rich Low_complexity Low_complexity 1 24 0 57 71 0 0 chr4 34578068 34578181 -149710481 + AT_rich Low_complexity Low_complexity 1 113 0 25 31 0 0 chr4 34578409 34578441 -149710221 + AT_rich Low_complexity Low_complexity 1 32 0 1524 252 20 24 chr4 34578548 34579008 -149709654 + MER89 LTR ERV1 1 557 -2 2672 146 2 7 chr4 34579173 34579619 -149709043 - MLT2A1 LTR ERVL 0 444 1 4694 96 5 11 chr4 34579619 34580276 -149708386 - HERVL-A1 LTR ERVL 0 5654 5002 2344 65 0 3 chr4 34580451 34580741 -149707921 - AluY SINE Alu -22 289 1 601 150 14 7 chr4 34580755 34580902 -149707760 + CT-rich Low_complexity Low_complexity 4 151 0 21 82 0 0 chr4 34582327 34582376 -149706286 + AT_rich Low_complexity Low_complexity 1 49 0 21 57 0 0 chr4 34582479 34582514 -149706148 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr4 34582727 34582749 -149705913 + AT_rich Low_complexity Low_complexity 1 22 0 180 179 0 0 chr4 34583058 34583097 -149705565 + (ATG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr4 34583427 34583449 -149705213 + AT_rich Low_complexity Low_complexity 1 22 0 242 314 98 0 chr4 34583752 34583854 -149704808 + L2 LINE L2 3160 3271 -1 461 284 36 10 chr4 34583919 34584113 -149704549 - Charlie2 DNA MER1_type 0 2862 2664 2046 90 10 51 chr4 34584206 34584518 -149704144 - AluY SINE Alu -12 299 1 249 301 80 35 chr4 34584523 34584636 -149704026 - L2 LINE L2 0 3313 3196 1003 263 53 56 chr4 34585271 34585822 -149702840 + LTR27 LTR ERV1 7 1231 -139 4439 147 53 19 chr4 34586218 34587018 -149701644 - MER4D LTR ERV1 -20 883 48 3883 152 17 20 chr4 34587416 34588114 -149700548 - MER50 LTR ERV1 -24 710 15 396 0 0 0 chr4 34589339 34589383 -149699279 + (TG)n Simple_repeat Simple_repeat 2 45 0 515 290 70 83 chr4 34589524 34589739 -149698923 - L1ME LINE L1 -5281 789 573 1489 164 3 76 chr4 34589739 34590043 -149698619 - AluJo SINE Alu -26 286 5 515 290 70 83 chr4 34590043 34590355 -149698307 - L1ME LINE L1 -5497 573 269 1375 196 39 4 chr4 34590516 34590796 -149697866 + AluJo SINE Alu 1 290 -22 475 133 12 0 chr4 34592149 34592232 -149696430 + GA-rich Low_complexity Low_complexity 3 86 0 191 149 30 30 chr4 34594085 34594152 -149694510 + (TA)n Simple_repeat Simple_repeat 1 67 0 243 286 22 0 chr4 34595085 34595176 -149693486 + (CATA)n Simple_repeat Simple_repeat 3 95 0 23 33 0 0 chr4 34595306 34595336 -149693326 + AT_rich Low_complexity Low_complexity 1 30 0 180 77 0 0 chr4 34595724 34595750 -149692912 + (CA)n Simple_repeat Simple_repeat 2 27 0 297 0 0 0 chr4 34595787 34595820 -149692842 + (TA)n Simple_repeat Simple_repeat 1 33 0 23 78 0 0 chr4 34596232 34596283 -149692379 + AT_rich Low_complexity Low_complexity 1 51 0 4248 81 2 0 chr4 34596320 34596885 -149691777 - L1PA7 LINE L1 -1 6153 5588 887 226 65 4 chr4 34597004 34597252 -149691410 + L1P LINE L1 4871 5133 -1013 1443 139 37 8 chr4 34597252 34597497 -149691165 + L1PA15 LINE L1 5912 6163 -2 1397 269 91 38 chr4 34597497 34598492 -149690170 + L1MEc LINE L1 734 1780 -4616 26 30 0 0 chr4 34599290 34599323 -149689339 + AT_rich Low_complexity Low_complexity 1 33 0 3287 111 59 18 chr4 34599665 34600240 -149688422 + MER51C LTR ERV1 1 640 0 22 0 0 0 chr4 34600511 34600533 -149688129 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 34601198 34601221 -149687441 + AT_rich Low_complexity Low_complexity 1 23 0 2291 64 0 10 chr4 34601578 34601873 -149686789 + AluY SINE Alu 1 292 -19 595 287 44 40 chr4 34602179 34602430 -149686232 - MIR SINE MIR -4 258 7 195 129 0 0 chr4 34602608 34602639 -149686023 + (CATATA)n Simple_repeat Simple_repeat 5 35 0 33 0 0 0 chr4 34603008 34603041 -149685621 + AT_rich Low_complexity Low_complexity 1 33 0 350 21 21 0 chr4 34603353 34603400 -149685262 + (CA)n Simple_repeat Simple_repeat 2 49 0 1606 233 125 25 chr4 34603585 34604016 -149684646 + MLT2B1 LTR ERVL 1 484 -36 207 0 0 0 chr4 34604016 34604039 -149684623 + (TA)n Simple_repeat Simple_repeat 2 24 0 1606 233 125 25 chr4 34604039 34604080 -149684582 + MLT2B1 LTR ERVL 484 520 0 23 33 0 0 chr4 34604629 34604659 -149684003 + AT_rich Low_complexity Low_complexity 1 30 0 2056 136 0 0 chr4 34605409 34605717 -149682945 + AluSg SINE Alu 1 308 -2 309 26 0 0 chr4 34607204 34607242 -149681420 + (CA)n Simple_repeat Simple_repeat 1 38 0 25 75 0 0 chr4 34607426 34607479 -149681183 + AT_rich Low_complexity Low_complexity 1 53 0 1389 51 0 61 chr4 34607560 34607797 -149680865 + AluY SINE Alu 98 322 0 256 298 12 48 chr4 34607887 34607971 -149680691 + L2 LINE L2 3184 3264 -8 22 35 0 0 chr4 34608066 34608095 -149680567 + AT_rich Low_complexity Low_complexity 1 29 0 1997 125 0 7 chr4 34608898 34609194 -149679468 - AluSx SINE Alu -16 296 3 7415 34 3 0 chr4 34609453 34610823 -149677839 - L1PA4 LINE L1 0 6155 4783 228 188 0 167 chr4 34610959 34611055 -149677607 - MADE1 DNA Mariner 0 80 1 1055 130 4 141 chr4 34611174 34611443 -149677219 - L1MA10 LINE L1 0 6334 6103 3014 160 18 7 chr4 34611580 34612131 -149676531 + L1 LINE L1 3903 4459 -1687 266 179 107 0 chr4 34612609 34612665 -149675997 - MIR SINE MIR -12 250 189 29348 116 11 85 chr4 34614050 34616885 -149671777 + L1PA7 LINE L1 13 3057 -3097 230 0 33 0 chr4 34616885 34616915 -149671747 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 29348 116 11 85 chr4 34616915 34620731 -149667931 + L1PA7 LINE L1 3057 6154 0 30 27 0 0 chr4 34621784 34621821 -149666841 + AT_rich Low_complexity Low_complexity 1 37 0 2292 204 60 49 chr4 34621875 34622503 -149666159 - MER92B LTR ERV1 0 636 2 283 276 29 9 chr4 34623077 34623182 -149665480 - LTR33 LTR ERVL 0 521 415 451 280 110 16 chr4 34623319 34623501 -149665161 - LTR33 LTR ERVL -311 210 12 1967 151 3 3 chr4 34623638 34623943 -149664719 - AluSx SINE Alu -2 310 6 22 0 0 0 chr4 34624764 34624786 -149663876 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 34625070 34625100 -149663562 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 34625243 34625271 -149663391 + AT_rich Low_complexity Low_complexity 1 28 0 520 417 21 3 chr4 34627752 34628078 -149660584 + L2 LINE L2 2465 2796 -518 1121 43 0 0 chr4 34628079 34628218 -149660444 + L1PA6 LINE L1 6016 6154 0 23 0 0 0 chr4 34628539 34628562 -149660100 + AT_rich Low_complexity Low_complexity 1 23 0 228 331 30 30 chr4 34628617 34628750 -149659912 + L2 LINE L2 3139 3271 -42 1162 257 42 86 chr4 34628754 34628800 -149659862 - MLT2B1 LTR ERVL 0 520 474 279 0 0 0 chr4 34628800 34628831 -149659831 + (CA)n Simple_repeat Simple_repeat 2 32 0 1162 257 42 86 chr4 34628831 34629328 -149659334 - MLT2B1 LTR ERVL -46 474 1 273 307 22 22 chr4 34629365 34629502 -149659160 - MIR SINE MIR -35 227 91 290 294 124 73 chr4 34630581 34630952 -149657710 + MLT1H LTR MaLR 147 536 -13 180 152 0 0 chr4 34631071 34631104 -149657558 + T-rich Low_complexity Low_complexity 1 33 0 33 0 0 0 chr4 34631414 34631447 -149657215 + AT_rich Low_complexity Low_complexity 1 33 0 851 208 0 58 chr4 34631742 34631949 -149656713 + AluJo SINE Alu 92 286 -26 24 77 0 0 chr4 34631975 34632027 -149656635 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr4 34632098 34632119 -149656543 + AT_rich Low_complexity Low_complexity 1 21 0 13778 87 24 17 chr4 34632582 34634823 -149653839 - L1P2 LINE L1 -595 5559 3300 2396 192 70 26 chr4 34635842 34636341 -149652321 + MER44D DNA MER2_type 30 605 0 1909 132 37 0 chr4 34636467 34636763 -149651899 - AluSc SINE Alu -2 307 1 408 254 107 0 chr4 34637274 34637443 -149651219 + MER53 DNA DNA 1 187 -2 633 138 37 9 chr4 34637946 34638055 -149650607 + L1MA3 LINE L1 16 127 -7438 13370 175 36 30 chr4 34638059 34640163 -149648499 + L1MA3 LINE L1 1099 3190 -4534 1069 188 164 40 chr4 34640163 34640461 -149648201 + AluSx SINE Alu 4 332 0 13370 175 36 30 chr4 34640461 34644952 -149643710 + L1MA3 LINE L1 3190 7724 0 22 0 0 0 chr4 34645120 34645142 -149643520 + AT_rich Low_complexity Low_complexity 1 22 0 498 146 0 0 chr4 34645309 34645391 -149643271 - L1PB4 LINE L1 -7 6149 6068 3413 151 31 15 chr4 34645535 34646146 -149642516 - L1MA8 LINE L1 -318 5973 5353 * 7281 33 6 1 chr4 34646142 34647072 -149641590 - L1PA3 LINE L1 0 6155 5254 1738 14 0 9 chr4 34647078 34647293 -149641369 + L1PA3 LINE L1 5014 5226 -920 982 203 31 0 chr4 34647291 34647513 -149641149 - L1MA8 LINE L1 -779 5367 5139 * 875 121 0 0 chr4 34647523 34647655 -149641007 + L1MA8 LINE L1 5842 5973 -318 368 139 13 0 chr4 34647692 34647771 -149640891 + (TA)n Simple_repeat Simple_repeat 2 81 0 1483 200 71 3 chr4 34648101 34648426 -149640236 + MER7A DNA MER2_type 1 345 -1 487 174 0 0 chr4 34648427 34648525 -149640137 + L1 LINE L1 4739 4836 -1310 854 277 21 93 chr4 34648807 34649193 -149639469 - MLT1A1 LTR MaLR -7 358 1 770 269 51 78 chr4 34649196 34650193 -149638469 - L1ME LINE L1 -4594 1667 664 2347 89 0 0 chr4 34650194 34650497 -149638165 - AluY SINE Alu -8 303 1 453 335 72 24 chr4 34650519 34650812 -149637850 + L1ME LINE L1 715 1021 -5049 348 344 52 0 chr4 34650876 34651030 -149637632 - LTR16A LTR ERVL -21 429 268 * 376 346 51 0 chr4 34651027 34651183 -149637479 - LTR16A LTR ERVL -21 429 266 1076 326 69 31 chr4 34651437 34652335 -149636327 - HERV16 LTR ERVL -2731 2265 1267 272 322 64 38 chr4 34652416 34652652 -149636010 - HERV16 LTR ERVL -3836 1160 919 1816 137 0 10 chr4 34652832 34653131 -149635531 + L1PA13 LINE L1 5866 6161 -2 429 325 72 13 chr4 34653200 34653437 -149635225 - HERV16 LTR ERVL -4372 624 374 1665 278 68 46 chr4 34653633 34654818 -149633844 + L1M4 LINE L1 3710 4921 -1225 224 265 128 43 chr4 34655491 34655608 -149633054 + L2 LINE L2 3141 3267 -5 724 88 79 0 chr4 34655747 34655861 -149632801 + AluY SINE Alu 1 123 -188 2387 67 0 3 chr4 34655865 34656177 -149632485 + AluY SINE Alu 1 311 0 24 0 0 0 chr4 34656362 34656386 -149632276 + AT_rich Low_complexity Low_complexity 1 24 0 557 265 20 69 chr4 34656541 34656617 -149632045 - L1ME1 LINE L1 -20 6146 6068 1976 134 7 0 chr4 34656617 34656915 -149631747 + AluSx SINE Alu 1 300 -12 557 265 20 69 chr4 34656915 34657042 -149631620 - L1ME1 LINE L1 -98 6068 5953 1895 165 51 65 chr4 34657442 34657933 -149630729 - MER31A LTR ERV1 -1 484 1 1708 173 0 0 chr4 34658523 34658829 -149629833 - AluJb SINE Alu 0 306 1 402 370 34 0 chr4 34659142 34659261 -149629401 + L2 LINE L2 3149 3271 -1 21 36 0 0 chr4 34659374 34659402 -149629260 + AT_rich Low_complexity Low_complexity 1 28 0 1666 147 14 7 chr4 34660057 34660379 -149628283 + AluSx SINE Alu 1 324 0 361 319 64 36 chr4 34660775 34661026 -149627636 - MER90 LTR ERV1 0 614 357 2225 93 14 0 chr4 34661036 34661327 -149627335 - AluSp SINE Alu -18 295 1 806 181 12 54 chr4 34661328 34661494 -149627168 - THE1C LTR MaLR -216 159 1 1712 170 13 28 chr4 34661495 34661813 -149626849 + MSTB LTR MaLR 114 426 0 369 275 53 30 chr4 34665444 34665575 -149623087 + MIR SINE MIR 90 223 -39 191 281 56 22 chr4 34665810 34665899 -149622763 + MIR SINE MIR 104 195 -67 26 0 0 0 chr4 34666108 34666134 -149622528 + AT_rich Low_complexity Low_complexity 1 26 0 285 344 96 32 chr4 34666226 34666383 -149622279 - MIR3 SINE MIR -17 191 25 28 61 0 0 chr4 34666738 34666787 -149621875 + AT_rich Low_complexity Low_complexity 1 49 0 940 259 44 4 chr4 34667157 34667408 -149621254 - MER110A LTR ERV1 -168 300 40 291 75 0 0 chr4 34668072 34668112 -149620550 - MADE1 DNA Mariner -39 41 2 209 253 92 58 chr4 34668276 34668363 -149620299 - L2 LINE L2 -3 3310 3221 199 372 23 69 chr4 34668437 34668655 -149620007 - L2 LINE L2 -400 2914 2707 1645 169 19 24 chr4 34668685 34669154 -149619508 + L1MA8 LINE L1 5058 5525 -743 548 162 10 20 chr4 34669156 34669255 -149619407 + MER4A LTR ERV1 1 98 -566 1335 209 81 26 chr4 34669255 34669638 -149619024 + MER4A LTR ERV1 261 664 0 12527 117 160 118 chr4 34669641 34670693 -149617969 + MER4A-int LTR ERV1 1 1007 -5591 225 108 0 0 chr4 34670693 34670730 -149617932 + (TG)n Simple_repeat Simple_repeat 2 38 0 12527 117 160 118 chr4 34670730 34673214 -149615448 + MER4A-int LTR ERV1 1007 3686 -2912 * 16251 113 40 17 chr4 34673208 34675142 -149613520 + MER4A-int LTR ERV1 3837 5851 -747 2307 114 0 0 chr4 34675142 34675450 -149613212 - AluSx SINE Alu -4 308 1 16251 113 40 17 chr4 34675450 34676213 -149612449 + MER4A-int LTR ERV1 5851 6595 -3 625 120 0 20 chr4 34676220 34676320 -149612342 + MER4A LTR ERV1 1 98 -566 1620 167 20 22 chr4 34676320 34676666 -149611996 + MER4A LTR ERV1 261 664 0 3130 199 8 7 chr4 34676667 34677284 -149611378 + L1MA8 LINE L1 5527 6144 -147 254 148 37 0 chr4 34677304 34677358 -149611304 + MSTB1 LTR MaLR 55 110 -322 377 125 0 0 chr4 34677363 34677419 -149611243 + L1MB4 LINE L1 6074 6129 -51 2073 240 33 49 chr4 34677493 34678173 -149610489 + L1MD3 LINE L1 6878 7772 -223 2122 184 36 5 chr4 34678173 34678586 -149610076 + MSTB LTR MaLR 1 426 0 2073 240 33 49 chr4 34678586 34678799 -149609863 + L1MD3 LINE L1 7772 7987 -8 1637 108 0 0 chr4 34679767 34680016 -149608646 - L1P3 LINE L1 -5076 1385 1137 701 80 0 0 chr4 34680014 34680102 -149608560 - L1P3 LINE L1 -6048 413 326 * 863 148 0 0 chr4 34680189 34680317 -149608345 + FLAM_C SINE Alu 1 128 -5 338 219 0 0 chr4 34680338 34680411 -149608251 + AluJ/FRAM SINE Alu 228 300 -2 245 146 0 60 chr4 34681058 34681125 -149607537 - MLT2B1 LTR ERVL 0 554 458 210 191 0 0 chr4 34681125 34681167 -149607495 + (CATA)n Simple_repeat Simple_repeat 3 44 0 773 263 110 0 chr4 34681181 34681390 -149607272 - MER46A DNA MER2_type -3 233 2 2083 212 58 7 chr4 34681391 34681839 -149606823 - MLT2B1 LTR ERVL -45 475 5 28 0 0 0 chr4 34682196 34682224 -149606438 + AT_rich Low_complexity Low_complexity 1 28 0 262 211 0 0 chr4 34682308 34682365 -149606297 + L1MA4 LINE L1 6203 6259 -41 240 347 113 8 chr4 34682398 34682522 -149606140 - MIR SINE MIR -112 150 14 345 74 19 0 chr4 34682626 34682680 -149605982 - L1PB2 LINE L1 -2 6149 6095 3701 164 21 46 chr4 34682780 34683401 -149605261 - L1PB2 LINE L1 -219 5932 5350 15827 32 4 0 chr4 34683401 34686092 -149602570 - L1PA4 LINE L1 -1 6154 3458 3701 164 21 46 chr4 34686092 34686626 -149602036 - L1PB2 LINE L1 -801 5350 4804 5792 217 23 6 chr4 34686727 34688145 -149600517 - L1PB2 LINE L1 -1917 4229 2789 2493 67 0 3 chr4 34688556 34688868 -149599794 + AluY SINE Alu 1 311 0 186 259 52 17 chr4 34689237 34689295 -149599367 + L2 LINE L2 2120 2179 -1135 27 29 0 0 chr4 34692299 34692333 -149596329 + AT_rich Low_complexity Low_complexity 1 34 0 1749 318 65 32 chr4 34692392 34693386 -149595276 + L2 LINE L2 1704 2730 -584 766 212 0 24 chr4 34693405 34693570 -149595092 - FRAM SINE Alu -12 164 4 549 342 76 16 chr4 34693575 34694062 -149594600 + L2 LINE L2 2746 3258 -55 22 35 0 0 chr4 34695810 34695839 -149592823 + AT_rich Low_complexity Low_complexity 1 29 0 1477 239 43 27 chr4 34696200 34696644 -149592018 + MLT1D LTR MaLR 53 503 -2 2036 115 0 38 chr4 34697083 34697396 -149591266 + AluSx SINE Alu 1 301 -11 191 333 81 11 chr4 34697409 34697496 -149591166 - L2 LINE L2 -21 3251 3159 1930 39 0 9 chr4 34698049 34698325 -149590337 + AluY SINE Alu 55 328 0 194 394 41 12 chr4 34698488 34698658 -149590004 + MIR SINE MIR 83 257 -5 1046 159 5 10 chr4 34699025 34699220 -149589442 - L1 LINE L1 -2337 3809 3616 3525 117 2 2 chr4 34699221 34699773 -149588889 + L1PB1 LINE L1 5231 5782 -369 236 254 14 14 chr4 34699781 34699852 -149588810 + (TA)n Simple_repeat Simple_repeat 2 72 0 1927 151 5 42 chr4 34699854 34700237 -149588425 + L1PB1 LINE L1 5783 6151 0 3027 159 139 0 chr4 34700378 34700976 -149587686 - Tigger1 DNA MER2_type -1 2417 1737 323 125 0 0 chr4 34700980 34701028 -149587634 - Alu SINE Alu -11 291 244 39 74 0 0 chr4 34701537 34701618 -149587044 + AT_rich Low_complexity Low_complexity 1 81 0 669 109 6 170 chr4 34701926 34702091 -149586571 - MER20 DNA MER1_type -81 138 1 242 235 17 113 chr4 34702364 34702479 -149586183 + L1ME4a LINE L1 5491 5594 -527 343 261 29 29 chr4 34702536 34702674 -149585988 + L1ME4a LINE L1 5797 5934 -187 252 0 0 0 chr4 34702767 34702795 -149585867 + (TC)n Simple_repeat Simple_repeat 1 28 0 216 184 0 0 chr4 34703133 34703171 -149585491 + (TG)n Simple_repeat Simple_repeat 1 38 0 208 278 250 0 chr4 34703449 34703521 -149585141 + MIR SINE MIR 152 241 -21 1906 125 18 0 chr4 34705087 34705367 -149583295 + AluSx SINE Alu 1 285 -27 25 31 0 0 chr4 34705367 34705399 -149583263 + AT_rich Low_complexity Low_complexity 1 32 0 2081 113 0 7 chr4 34705674 34705965 -149582697 - AluSc SINE Alu -20 289 1 22 0 0 0 chr4 34708246 34708268 -149580394 + AT_rich Low_complexity Low_complexity 1 22 0 4435 195 40 33 chr4 34709449 34709913 -149578749 + L1MC3 LINE L1 6745 7204 -581 2571 110 3 3 chr4 34709913 34710277 -149578385 + THE1B LTR MaLR 1 364 0 4435 195 40 33 chr4 34710277 34710846 -149577816 + L1MC3 LINE L1 7204 7785 0 1103 280 26 67 chr4 34710976 34711441 -149577221 + LTR40b LTR ERVL 3 448 -14 2371 50 0 3 chr4 34711556 34711867 -149576795 - AluY SINE Alu 0 310 1 1093 218 5 41 chr4 34712228 34712505 -149576157 + MLT1D LTR MaLR 250 505 0 384 367 88 29 chr4 34712710 34713051 -149575611 - MER45C DNA AcHobo -52 901 541 298 253 63 70 chr4 34713124 34713282 -149575380 - LTR16A1 LTR ERVL -300 157 1 848 234 0 0 chr4 34713418 34713589 -149575073 + FAM SINE Alu 1 171 -4 296 305 0 0 chr4 34714742 34714819 -149573843 + MIR SINE MIR 42 118 -90 306 356 0 0 chr4 34714915 34715030 -149573632 + MIR SINE MIR 105 219 -43 2245 200 12 2 chr4 34715073 34715493 -149573169 + MSTB LTR MaLR 3 426 0 869 237 20 0 chr4 34715526 34715724 -149572938 - MLT1D LTR MaLR -297 208 7 32 26 0 0 chr4 34716017 34716056 -149572606 + AT_rich Low_complexity Low_complexity 1 39 0 196 276 23 69 chr4 34716935 34717022 -149571640 + L2 LINE L2 3229 3311 -2 212 233 62 108 chr4 34717319 34717448 -149571214 - MIR SINE MIR -14 248 126 2532 108 8 11 chr4 34717653 34718024 -149570638 - THE1C LTR MaLR -5 370 1 26 30 0 0 chr4 34718205 34718238 -149570424 + AT_rich Low_complexity Low_complexity 1 33 0 1753 49 0 0 chr4 34718523 34718748 -149569914 + L1PA4 LINE L1 5928 6152 -3 563 223 128 7 chr4 34718772 34718920 -149569742 - FRAM SINE Alu 0 166 1 1780 240 46 26 chr4 34720330 34720834 -149567828 + MER63 DNA MER1_type 547 1060 -1 1273 301 113 36 chr4 34720999 34721630 -149567032 + L1MEc LINE L1 41 719 -5677 * 2294 204 46 18 chr4 34721625 34722194 -149566468 + L1P LINE L1 4196 4780 -1366 2285 107 31 0 chr4 34722194 34722521 -149566141 - LTR12 LTR ERV1 -1 713 377 246 309 10 0 chr4 34722521 34722618 -149566044 - LTR30 LTR ERV1 -79 643 546 879 114 7 0 chr4 34722618 34722758 -149565904 - LTR12 LTR ERV1 -432 282 142 527 294 102 22 chr4 34823288 34823563 -149465099 + L2 LINE L2 2804 3100 -172 605 284 65 22 chr4 34823674 34823906 -149464756 + MIR SINE MIR 18 259 -3 254 293 24 0 chr4 34823918 34824000 -149464662 + L2 LINE L2 3230 3313 0 * 326 188 98 45 chr4 34823981 34824093 -149464569 + MIR SINE MIR 131 248 -14 449 294 27 60 chr4 34824519 34824703 -149463959 - MIR SINE MIR -72 190 13 273 141 94 16 chr4 34824707 34824771 -149463891 + MIR SINE MIR 63 131 -77 230 329 24 0 chr4 34824775 34824857 -149463805 + MIR SINE MIR 23 106 -102 496 250 77 48 chr4 34825321 34825626 -149463036 + MLT1H LTR MaLR 115 547 -2 367 253 82 63 chr4 34826214 34826372 -149462290 + MIR SINE MIR 29 189 -73 357 238 107 57 chr4 34826378 34826500 -149462162 + L2 LINE L2 3183 3310 -3 626 300 55 24 chr4 34826535 34827006 -149461656 + MLT1K LTR MaLR 23 541 -47 1003 240 106 13 chr4 34827520 34827738 -149460924 - MER58B DNA MER1_type -2079 341 84 1840 140 3 53 chr4 34827738 34828060 -149460602 - AluJb SINE Alu -6 306 1 1003 240 106 13 chr4 34828060 34828153 -149460509 - MER58B DNA MER1_type -2336 84 1 550 299 109 54 chr4 34828279 34828626 -149460036 + L2 LINE L2 2926 3296 -17 2296 103 0 10 chr4 34828626 34828928 -149459734 + AluSx SINE Alu 1 299 -13 550 299 109 54 chr4 34828928 34828948 -149459714 + L2 LINE L2 3296 3313 0 975 224 83 22 chr4 34829096 34829324 -149459338 - MIR SINE MIR 0 262 21 269 301 39 19 chr4 34829971 34830074 -149458588 + MIR SINE MIR 126 230 -32 419 217 154 35 chr4 34830370 34830513 -149458149 + MIR SINE MIR 22 147 -61 237 196 0 0 chr4 34830954 34831005 -149457657 + (TG)n Simple_repeat Simple_repeat 2 52 0 691 281 28 43 chr4 34831212 34831465 -149457197 + MIR SINE MIR 12 260 -2 225 320 55 36 chr4 34831515 34831734 -149456928 - L1ME4a LINE L1 -65 6056 5834 368 308 0 25 chr4 34831791 34831911 -149456751 - MIR SINE MIR -58 150 34 765 146 16 16 chr4 34832455 34832615 -149456047 - FLAM_C SINE Alu 0 143 2 2007 137 0 38 chr4 34833062 34833375 -149455287 + AluSx SINE Alu 1 301 -11 648 256 50 27 chr4 34833537 34833799 -149454863 - MLT1L LTR MaLR 0 615 348 21 0 0 0 chr4 34833868 34833889 -149454773 + AT_rich Low_complexity Low_complexity 1 21 0 323 232 0 40 chr4 34833968 34834067 -149454595 - L1ME1 LINE L1 -56 6110 6016 244 247 62 12 chr4 34834084 34834165 -149454497 - MLT1L LTR MaLR -54 561 477 565 252 103 20 chr4 34834215 34834433 -149454229 + MIR SINE MIR 16 249 -13 492 265 30 8 chr4 34834658 34834790 -149453872 + MIR SINE MIR 2 136 -126 1927 118 30 0 chr4 34835101 34835372 -149453290 + AluJb SINE Alu 31 309 -3 26 30 0 0 chr4 34835569 34835602 -149453060 + AT_rich Low_complexity Low_complexity 1 33 0 292 340 19 0 chr4 34836242 34836348 -149452314 + MIR SINE MIR 34 141 -67 * 626 281 42 10 chr4 34836344 34836536 -149452126 - MIR SINE MIR 0 262 65 406 332 115 5 chr4 34836735 34836943 -149451719 + L2 LINE L2 2917 3147 -125 672 231 50 11 chr4 34836950 34837132 -149451530 + MIR SINE MIR 13 201 -61 1923 232 77 56 chr4 34837214 34837484 -149451178 - L1MC4 LINE L1 0 8042 7779 2284 104 3 10 chr4 34837484 34837783 -149450879 - AluSc SINE Alu -12 297 1 1923 232 77 56 chr4 34837783 34837928 -149450734 - L1MC4 LINE L1 -263 7779 7638 2338 101 7 0 chr4 34837928 34838224 -149450438 - AluSq SINE Alu -13 300 3 1923 232 77 56 chr4 34838224 34838483 -149450179 - L1MC4 LINE L1 -404 7638 7353 232 250 0 6 chr4 34839634 34839739 -149448923 + L2 LINE L2 2899 3059 -213 244 295 53 32 chr4 34839908 34840003 -149448659 + MIR SINE MIR 118 214 -48 1844 145 51 0 chr4 34840149 34840302 -149448360 - AluSx SINE Alu -22 290 146 225 94 0 0 chr4 34840302 34840334 -149448328 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1844 145 51 0 chr4 34840334 34840456 -149448206 - AluSx SINE Alu -166 146 1 219 258 16 32 chr4 34841606 34841668 -149446994 - L2 LINE L2 -1 3271 3211 480 229 0 9 chr4 34841726 34841835 -149446827 + LTR67 LTR ERVL 450 557 0 282 253 122 33 chr4 34842033 34842185 -149446477 - MIR SINE MIR -55 207 42 375 232 11 42 chr4 34842879 34842974 -149445688 + L2 LINE L2 3221 3312 -1 741 254 57 18 chr4 34843238 34843466 -149445196 - MIR SINE MIR -10 252 16 338 283 102 28 chr4 34843761 34844044 -149444618 - L1ME4a LINE L1 -46 6075 5772 2331 189 34 31 chr4 34844081 34844635 -149444027 - L1ME1 LINE L1 -2 6164 5609 534 266 74 58 chr4 34844836 34845148 -149443514 - L1ME4a LINE L1 -192 5929 5613 845 260 59 36 chr4 34845234 34845822 -149442840 + L1ME LINE L1 4876 5474 -688 740 125 108 0 chr4 34845837 34845957 -149442705 + FLAM_C SINE Alu 6 138 -5 230 71 0 48 chr4 34846013 34846055 -149442607 + (TTTTTA)n Simple_repeat Simple_repeat 2 41 0 2310 104 0 3 chr4 34846291 34846590 -149442072 + AluSx SINE Alu 1 298 -14 883 136 21 0 chr4 34846622 34846762 -149441900 + Tigger7 DNA MER2_type 1 143 -407 245 272 0 22 chr4 34846760 34846852 -149441810 + MER74B LTR ERVL 374 463 -159 * 293 153 0 17 chr4 34846865 34846924 -149441738 - MSTB LTR MaLR -85 341 284 235 267 23 12 chr4 34846910 34846996 -149441666 + MER74A LTR ERVL 409 495 -63 * 344 281 117 8 chr4 34847040 34847201 -149441461 + L1ME2 LINE L1 5986 6170 0 874 141 7 0 chr4 34847241 34847390 -149441272 + L1MD3 LINE L1 7832 7981 -14 287 271 21 31 chr4 34847400 34847496 -149441166 - L2 LINE L2 -484 2830 2736 1417 196 27 82 chr4 34848379 34848783 -149439879 + MLT1B LTR MaLR 1 382 -8 279 305 67 38 chr4 34848793 34848898 -149439764 + L2 LINE L2 3205 3312 -1 22 35 0 0 chr4 34848942 34848971 -149439691 + AT_rich Low_complexity Low_complexity 1 29 0 2721 113 51 5 chr4 34849057 34849466 -149439196 - MSTA LTR MaLR 0 428 1 2308 158 108 14 chr4 34849575 34850064 -149438598 + MLT1F LTR MaLR 8 542 0 2157 146 0 0 chr4 34850067 34850375 -149438287 - AluJb SINE Alu -4 308 1 1855 179 0 10 chr4 34850377 34850679 -149437983 - AluJb SINE Alu -12 300 2 1049 148 0 19 chr4 34850680 34850835 -149437827 - FRAM SINE Alu -13 163 12 272 318 178 21 chr4 34851174 34851640 -149437022 + L2 LINE L2 2213 2751 -563 3403 126 97 3 chr4 34851642 34852230 -149436432 - MER39B LTR ERV1 -4 649 7 2085 124 73 22 chr4 34852230 34852586 -149436076 + THE1C LTR MaLR 1 374 -1 10603 112 29 24 chr4 34852587 34854159 -149434503 + THE1C-int LTR MaLR 1 1580 0 1892 144 42 58 chr4 34854159 34854500 -149434162 + THE1C LTR MaLR 1 337 -38 2132 143 13 0 chr4 34854500 34854807 -149433855 - AluSx SINE Alu -1 311 1 1892 144 42 58 chr4 34854807 34854846 -149433816 + THE1C LTR MaLR 337 375 0 937 251 94 37 chr4 34854962 34855312 -149433350 + L2 LINE L2 2919 3288 -25 282 297 55 4 chr4 34855334 34855463 -149433199 + L2 LINE L2 2852 2981 -291 22 35 0 0 chr4 34855467 34855496 -149433166 + AT_rich Low_complexity Low_complexity 1 29 0 1354 163 32 109 chr4 34855505 34855818 -149432844 - AluJo SINE Alu -23 289 1 210 265 10 61 chr4 34855842 34855940 -149432722 + L2 LINE L2 3004 3096 -176 315 0 0 0 chr4 34856096 34856131 -149432531 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 263 200 13 53 chr4 34856165 34856240 -149432422 + MIR3 SINE MIR 86 157 -51 1494 185 11 24 chr4 34857167 34857454 -149431208 - L1MC3 LINE L1 -462 7323 7041 517 148 148 0 chr4 34857454 34857542 -149431120 + Tigger3(Golem) DNA MER2_type 1 101 -2928 * 3964 106 99 45 chr4 34857533 34857632 -149431030 + Tigger3(Golem) DNA MER2_type 2229 2321 -707 2390 94 0 0 chr4 34857632 34857929 -149430733 - AluSq SINE Alu -16 297 1 3964 106 99 45 chr4 34857929 34857945 -149430717 + Tigger3(Golem) DNA MER2_type 2321 2335 -693 1553 174 22 59 chr4 34857945 34858267 -149430395 - AluJo SINE Alu -2 310 1 3964 106 99 45 chr4 34858267 34858504 -149430158 + Tigger3(Golem) DNA MER2_type 2335 2558 -470 2364 111 0 0 chr4 34858504 34858810 -149429852 + AluSq SINE Alu 1 306 -7 3964 106 99 45 chr4 34858810 34859209 -149429453 + Tigger3(Golem) DNA MER2_type 2558 3023 -5 2042 170 47 72 chr4 34859286 34859478 -149429184 - L1MC3 LINE L1 -830 6955 6760 348 24 0 0 chr4 34859478 34859519 -149429143 + (TC)n Simple_repeat Simple_repeat 2 42 0 1838 168 4 0 chr4 34859520 34859800 -149428862 - AluJb SINE Alu -31 281 1 2042 170 47 72 chr4 34859800 34860118 -149428544 - L1MC3 LINE L1 -1024 6761 6456 1079 212 60 11 chr4 34860119 34860388 -149428274 - L1MC4 LINE L1 -1029 7013 6732 1994 230 160 39 chr4 34860397 34861436 -149427226 - L1MC3 LINE L1 -1229 6556 5418 186 184 0 0 chr4 34862076 34862113 -149426549 + (TCCA)n Simple_repeat Simple_repeat 1 40 -9 2613 183 78 22 chr4 34862113 34862648 -149426014 - MLT1F1 LTR MaLR -2 565 1 186 184 0 0 chr4 34862648 34862659 -149426003 + (TCCA)n Simple_repeat Simple_repeat 39 49 0 496 201 43 5 chr4 34862751 34862921 -149425741 - MER102b DNA MER1_type -1 340 76 484 316 69 43 chr4 34863089 34863320 -149425342 + L2 LINE L2 2936 3172 -100 623 282 158 28 chr4 34863998 34864227 -149424435 + L2 LINE L2 2702 2900 -372 2336 103 0 0 chr4 34864227 34864527 -149424135 - AluSc SINE Alu -9 300 1 623 282 158 28 chr4 34864527 34864791 -149423871 + L2 LINE L2 2900 3254 -18 304 260 30 20 chr4 34864886 34864986 -149423676 - MIR SINE MIR -65 143 43 535 246 8 8 chr4 34865520 34865642 -149423020 + MLT1K LTR MaLR 140 261 -327 272 133 100 0 chr4 34865780 34865840 -149422822 + MLT1K LTR MaLR 513 578 -10 2394 94 0 3 chr4 34865841 34866138 -149422524 + AluSq SINE Alu 1 296 -17 914 293 75 19 chr4 34866324 34866737 -149421925 - LTR16B LTR ERVL -13 451 16 593 276 32 5 chr4 34866866 34867051 -149421611 + MER117 DNA MER1_type 5 194 -3 540 294 106 0 chr4 34867218 34867388 -149421274 - MIR SINE MIR -12 250 63 6842 178 26 7 chr4 34867676 34870058 -149418604 - L1MA2 LINE L1 0 6304 3856 185 0 40 0 chr4 34870058 34870083 -149418579 + (ATGTG)n Simple_repeat Simple_repeat 2 27 0 6842 178 26 7 chr4 34870083 34870351 -149418311 - L1MA2 LINE L1 -2448 3856 3595 408 250 152 0 chr4 34870384 34870516 -149418146 - MIR SINE MIR -29 233 82 186 43 0 0 chr4 34870539 34870562 -149418100 + (TG)n Simple_repeat Simple_repeat 1 23 0 2085 130 3 3 chr4 34870713 34871006 -149417656 - AluSx SINE Alu -17 295 3 1164 145 0 0 chr4 34871169 34871335 -149417327 - FRAM SINE Alu 0 166 1 672 299 24 14 chr4 34871404 34871611 -149417051 + MIR SINE MIR 3 211 -51 235 230 130 10 chr4 34871728 34871828 -149416834 + LTR67 LTR ERVL 441 552 -5 378 236 117 99 chr4 34872203 34872546 -149416116 + L2 LINE L2 2875 3223 -90 1090 127 40 115 chr4 34872653 34872906 -149415756 - MLT1A1 LTR MaLR 0 365 132 2152 111 0 14 chr4 34872906 34873195 -149415467 + AluSx SINE Alu 1 285 -27 337 217 20 51 chr4 34873195 34873297 -149415365 + L1MC4 LINE L1 1995 6984 -1338 375 279 47 0 chr4 34873300 34873386 -149415276 + L1MC4 LINE L1 6614 6703 -1339 834 136 0 21 chr4 34873399 34873539 -149415123 - MLT1A1 LTR MaLR -227 138 2 266 283 119 38 chr4 34873723 34873758 -149414904 - MIR SINE MIR -75 187 156 351 0 0 0 chr4 34873758 34873797 -149414865 + (CAT)n Simple_repeat Simple_repeat 2 40 0 266 283 119 38 chr4 34873797 34873920 -149414742 - MIR SINE MIR -106 156 16 306 0 0 0 chr4 34874986 34875020 -149413642 + (TG)n Simple_repeat Simple_repeat 1 34 0 468 174 0 0 chr4 34875308 34875400 -149413262 + (CA)n Simple_repeat Simple_repeat 1 92 0 421 291 122 9 chr4 34875620 34875833 -149412829 - MIR SINE MIR -4 258 22 544 306 73 5 chr4 34876065 34876271 -149412391 + L2 LINE L2 2844 3063 -209 1257 230 67 30 chr4 34876512 34876639 -149412023 + MER113 DNA MER1_type? 73 194 -327 2392 80 0 3 chr4 34876639 34876939 -149411723 + AluSq SINE Alu 1 299 -14 1257 230 67 30 chr4 34876939 34877216 -149411446 + MER113 DNA MER1_type? 194 492 -29 2082 142 3 0 chr4 34877238 34877540 -149411122 - AluSx SINE Alu -9 303 1 1954 148 3 17 chr4 34878022 34878319 -149410343 - AluJo SINE Alu -19 293 1 21 0 0 0 chr4 34878369 34878390 -149410272 + AT_rich Low_complexity Low_complexity 1 21 0 217 294 151 8 chr4 34878559 34878663 -149409999 - L2 LINE L2 -547 2767 2647 420 278 224 4 chr4 34878663 34878860 -149409802 + MIR SINE MIR 2 232 -30 277 266 97 0 chr4 34878962 34879075 -149409587 - MIR3 SINE MIR -71 137 14 197 339 0 0 chr4 34879173 34879232 -149409430 + L3b LINE CR1 1351 1409 -174 271 217 17 17 chr4 34879289 34879349 -149409313 + Charlie8 DNA MER1_type 3 62 -2355 2154 122 3 0 chr4 34879650 34879945 -149408717 - AluSx SINE Alu -16 296 1 1780 168 20 3 chr4 34880042 34880334 -149408328 - AluJo SINE Alu -15 297 1 312 274 12 12 chr4 34880348 34880432 -149408230 - MIR3 SINE MIR -8 200 117 2229 99 0 3 chr4 34880655 34880960 -149407702 + AluSq SINE Alu 1 304 0 358 291 94 72 chr4 34881054 34881277 -149407385 - L1ME4a LINE L1 0 6121 5894 432 246 71 8 chr4 34881298 34881472 -149407190 + L1ME3 LINE L1 5985 6163 -1 294 291 121 36 chr4 34882306 34882471 -149406191 + MIR SINE MIR 48 226 -36 199 255 0 113 chr4 34882642 34882748 -149405914 - MIR SINE MIR -55 207 114 455 234 52 19 chr4 34882817 34882971 -149405691 + L1ME3 LINE L1 6002 6160 -2 2272 121 0 0 chr4 34882974 34883272 -149405390 + AluSx SINE Alu 1 298 -14 415 268 138 31 chr4 34883486 34883710 -149404952 - MER113 DNA MER1_type? -71 450 203 37 52 0 0 chr4 34883752 34883810 -149404852 + AT_rich Low_complexity Low_complexity 1 58 0 2372 125 19 8 chr4 34883926 34884303 -149404359 + LTR9B LTR ERV1 178 558 -86 462 18 0 0 chr4 34884303 34884358 -149404304 + (CA)n Simple_repeat Simple_repeat 1 55 0 216 0 0 0 chr4 34884359 34884383 -149404279 + (TAA)n Simple_repeat Simple_repeat 3 26 0 859 216 61 35 chr4 34884412 34884643 -149404019 - MIR SINE MIR -13 249 13 364 240 20 27 chr4 34884643 34884789 -149403873 - MER113 DNA MER1_type? -364 157 13 243 269 42 76 chr4 34884816 34884935 -149403727 - MIR3 SINE MIR -50 158 44 183 80 0 0 chr4 34885260 34885285 -149403377 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 1926 149 0 3 chr4 34885688 34885970 -149402692 + AluJb SINE Alu 1 281 -31 207 0 0 0 chr4 34885974 34885997 -149402665 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 981 167 17 6 chr4 34886000 34886217 -149402445 + AluSg/x SINE Alu 137 312 0 185 274 59 0 chr4 34886254 34886305 -149402357 - L2 LINE L2 -13 3300 3247 1463 231 31 100 chr4 34886335 34886626 -149402036 - MLT1D LTR MaLR 0 505 196 1982 141 27 3 chr4 34886626 34886925 -149401737 - AluSx SINE Alu -6 306 1 1463 231 31 100 chr4 34886925 34886948 -149401714 - MLT1D LTR MaLR -309 196 173 847 137 0 0 chr4 34886948 34887065 -149401597 - FLAM_C SINE Alu -16 117 1 1463 231 31 100 chr4 34887065 34887291 -149401371 - MLT1D LTR MaLR -332 173 1 423 255 124 66 chr4 34887314 34887573 -149401089 - L2 LINE L2 -163 3109 2836 398 176 224 8 chr4 34888187 34888312 -149400350 - MLT1K LTR MaLR 0 549 398 936 187 43 10 chr4 34888443 34888689 -149399973 - L2 LINE L2 -277 3036 2784 672 255 86 59 chr4 34889533 34889823 -149398839 - MLT1K LTR MaLR -165 423 126 2277 92 0 58 chr4 34889846 34890171 -149398491 + AluSg SINE Alu 1 306 -4 246 268 24 12 chr4 34890478 34890560 -149398102 + MIR SINE MIR 180 262 0 500 333 82 22 chr4 34890828 34891059 -149397603 + MIR SINE MIR 14 258 -4 515 267 41 45 chr4 34891164 34891358 -149397304 + MIR SINE MIR 1 192 -64 188 67 33 0 chr4 34892052 34892082 -149396580 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1381 138 19 31 chr4 34892174 34892435 -149396227 + Tigger5 DNA MER2_type 2066 2323 0 415 262 19 9 chr4 34892435 34892542 -149396120 - MIR SINE MIR -64 198 91 270 227 57 34 chr4 34892766 34892854 -149395808 + MER96 DNA MER1_type? 69 158 -17 513 257 57 14 chr4 34894485 34894625 -149394037 + MIR SINE MIR 43 188 -74 298 195 24 73 chr4 34894638 34894720 -149393942 + AluJ/FLAM SINE Alu 2 79 -223 473 104 13 0 chr4 34894723 34894800 -149393862 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 1083 162 12 0 chr4 34894803 34894970 -149393692 + AluJo SINE Alu 127 295 -17 255 233 17 0 chr4 34894999 34895059 -149393603 + MIR SINE MIR 202 262 0 275 222 0 0 chr4 34895464 34895518 -149393144 + MIR3 SINE MIR 109 162 -46 195 250 0 0 chr4 34895532 34895584 -149393078 + (TCCA)n Simple_repeat Simple_repeat 3 54 0 725 215 106 115 chr4 34895607 34896058 -149392604 - LTR16A1 LTR ERVL -10 447 1 788 250 60 103 chr4 34896090 34896458 -149392204 - L2 LINE L2 -3 3269 2918 453 235 122 4 chr4 34896710 34896836 -149391826 + MIR3 SINE MIR 34 166 -48 302 246 0 0 chr4 34896827 34896892 -149391770 + L2 LINE L2 634 698 -2616 * 196 321 18 0 chr4 34896898 34896954 -149391708 + L2 LINE L2 3215 3271 -1 3105 267 112 19 chr4 34897087 34898191 -149390471 + L2 LINE L2 1453 2659 -655 2087 159 67 41 chr4 34898389 34898853 -149389809 - MLT1D LTR MaLR -7 498 23 281 282 0 0 chr4 34899514 34899592 -149389070 + MER5A DNA MER1_type 4 81 -108 394 353 125 10 chr4 34899663 34899966 -149388696 - L2 LINE L2 -1 3271 2934 2147 133 79 16 chr4 34900008 34900375 -149388287 - MLT1B LTR MaLR 0 390 1 409 237 160 5 chr4 34900823 34901017 -149387645 - L1MC4 LINE L1 0 8042 7819 1659 158 14 14 chr4 34901056 34901334 -149387328 - AluJo SINE Alu -22 290 13 465 225 9 9 chr4 34901470 34901581 -149387081 - FLAM_C SINE Alu -31 112 2 2566 53 0 7 chr4 34901771 34902073 -149386589 - AluY SINE Alu -11 300 1 29 0 0 0 chr4 34902075 34902104 -149386558 + AT_rich Low_complexity Low_complexity 1 29 0 678 264 56 30 chr4 34902621 34902852 -149385810 - MIR SINE MIR -12 250 9 414 326 0 35 chr4 34902884 34903025 -149385637 - L2 LINE L2 -213 3059 2924 366 297 38 72 chr4 34903364 34903507 -149385155 - L2 LINE L2 -78 3235 3089 2410 102 3 0 chr4 34903507 34903811 -149384851 - AluSp SINE Alu -8 305 1 938 147 43 38 chr4 34903811 34903995 -149384667 - MER5A DNA MER1_type -4 185 1 366 297 38 72 chr4 34903995 34904086 -149384576 - L2 LINE L2 -222 3091 3008 389 158 12 0 chr4 34904117 34904199 -149384463 + (TGAG)n Simple_repeat Simple_repeat 4 86 0 245 358 68 20 chr4 34904791 34904939 -149383723 - L2 LINE L2 -12 3260 3106 215 213 193 33 chr4 34904946 34905063 -149383599 + MIR SINE MIR 18 157 -105 * 494 225 183 0 chr4 34905053 34905222 -149383440 - MIR SINE MIR 0 262 63 187 215 28 178 chr4 34905344 34905451 -149383211 + MER5A DNA MER1_type 59 149 -40 564 249 21 53 chr4 34905620 34905809 -149382853 - MLT1L LTR MaLR -308 307 125 211 267 57 57 chr4 34905969 34906074 -149382588 - L2 LINE L2 -182 3090 2986 204 102 61 0 chr4 34956434 34956483 -149332179 + (TA)n Simple_repeat Simple_repeat 1 52 0 23 33 0 0 chr4 34957235 34957265 -149331397 + AT_rich Low_complexity Low_complexity 1 30 0 721 160 35 80 chr4 34957591 34957791 -149330871 + LTR49-int LTR ERV1 3098 3288 -3043 380 70 0 18 chr4 34957819 34957876 -149330786 + AluS SINE Alu 22 77 -226 437 231 19 0 chr4 34957931 34958035 -149330627 + LTR49-int LTR ERV1 3348 3453 -2878 30 109 0 0 chr4 34958157 34958285 -149330377 + AT_rich Low_complexity Low_complexity 1 128 0 1346 183 39 69 chr4 34958297 34959053 -149329609 + LTR49-int LTR ERV1 1925 4498 -2280 701 149 8 15 chr4 34959074 34959208 -149329454 + LTR49-int LTR ERV1 4039 4171 -2160 381 78 0 0 chr4 34959308 34959359 -149329303 - MER4E LTR ERV1 -715 51 1 3075 183 108 32 chr4 34959411 34960192 -149328470 - L1MA9 LINE L1 -40 6272 5433 497 157 10 59 chr4 34960193 34960295 -149328367 - FLAM_C SINE Alu -10 133 37 183 80 0 0 chr4 34960312 34960337 -149328325 + (TTG)n Simple_repeat Simple_repeat 2 26 0 760 157 0 0 chr4 34960337 34960458 -149328204 - FLAM_C SINE Alu -22 121 1 779 107 30 77 chr4 34960462 34960630 -149328032 - L1MA9 LINE L1 -733 5435 5276 2231 106 6 0 chr4 34960634 34960945 -149327717 - AluSp SINE Alu 0 313 1 1215 219 15 19 chr4 34961120 34961380 -149327282 + MLT1A1 LTR MaLR 7 265 -100 693 268 53 11 chr4 34961412 34961696 -149326966 + L1MB7 LINE L1 5280 5575 -587 2464 58 0 7 chr4 34962017 34962325 -149326337 - AluY SINE Alu -5 306 1 1159 331 116 6 chr4 34962378 34963015 -149325647 + L2 LINE L2 2265 2971 -343 504 315 8 0 chr4 34963312 34963442 -149325220 + L2 LINE L2 3141 3271 -1 2052 111 30 3 chr4 34963490 34963788 -149324874 + AluSx SINE Alu 1 306 -6 805 122 0 0 chr4 34965156 34965279 -149323383 - AluSp/q SINE Alu -3 310 188 261 351 78 20 chr4 34965281 34965526 -149323136 + L3 LINE CR1 636 894 -683 1200 223 0 16 chr4 34965532 34965779 -149322883 + AluJo SINE Alu 42 284 -28 194 146 0 24 chr4 34965810 34965851 -149322811 + (GAAA)n Simple_repeat Simple_repeat 1 40 0 335 306 42 87 chr4 34966336 34966601 -149322061 + L3 LINE CR1 1213 1465 -112 1775 208 21 8 chr4 34966724 34967109 -149321553 - MLT1B LTR MaLR 0 390 1 384 231 0 0 chr4 34967449 34967553 -149321109 + (TA)n Simple_repeat Simple_repeat 2 105 0 867 249 18 9 chr4 34967570 34967787 -149320875 + MER20 DNA MER1_type 1 219 0 1408 122 43 141 chr4 34969549 34969876 -149318786 + AluSg SINE Alu 2 296 -4 2337 203 21 6 chr4 34970208 34970690 -149317972 + L1PB4 LINE L1 5668 6156 0 28 91 0 0 chr4 34970690 34970767 -149317895 + AT_rich Low_complexity Low_complexity 1 77 0 5541 89 12 1 chr4 34970844 34971379 -149317283 - L1P LINE L1 -1413 4733 4186 2315 88 3 0 chr4 34971379 34971674 -149316988 - AluSp SINE Alu -17 296 1 5541 89 12 1 chr4 34971674 34971910 -149316752 - L1P LINE L1 -1960 4186 3954 6450 78 10 2 chr4 34971910 34973333 -149315329 + L1PA7 LINE L1 4718 6149 -5 2357 189 101 31 chr4 34973448 34974030 -149314632 + L1MB7 LINE L1 5562 6184 0 377 294 37 0 chr4 34974084 34974220 -149314442 + MIR SINE MIR 122 262 0 365 394 0 21 chr4 34974773 34974915 -149313747 - L2 LINE L2 0 3272 3134 251 343 7 89 chr4 34974949 34975095 -149313567 - L2 LINE L2 -268 3004 2871 348 311 38 55 chr4 34975271 34975454 -149313208 - L2 LINE L2 0 3313 3134 427 338 110 11 chr4 34975749 34976030 -149312632 - L2 LINE L2 -556 2758 2450 2914 194 54 7 chr4 34976473 34977153 -149311509 - L1MB4 LINE L1 0 6180 5469 * 5476 139 21 9 chr4 34977134 34978145 -149310517 - L1PA5 LINE L1 0 6154 5134 22 56 0 0 chr4 34978742 34978778 -149309884 + AT_rich Low_complexity Low_complexity 1 36 0 201 74 0 0 chr4 34979676 34979703 -149308959 + (CA)n Simple_repeat Simple_repeat 2 28 0 796 206 86 128 chr4 34979963 34980323 -149308339 + MLT2D LTR ERVL 1 345 -69 439 266 75 35 chr4 34980507 34980706 -149307956 + LTR7 LTR ERV1 226 432 -18 918 169 46 46 chr4 34980708 34980927 -149307735 - pTR5 LTR ERV1 -1479 959 741 633 292 82 21 chr4 34981226 34981469 -149307193 + MLT1C LTR MaLR 210 467 0 426 333 56 30 chr4 34983206 34983404 -149305258 + MIR SINE MIR 8 210 -52 260 231 46 0 chr4 34983432 34983497 -149305165 - LTR16A LTR ERVL 0 450 383 390 259 91 25 chr4 34983892 34984089 -149304573 + L1MB2 LINE L1 5594 5803 -318 371 125 0 0 chr4 34984396 34984452 -149304210 + MSTA LTR MaLR 373 428 0 268 345 97 0 chr4 34984876 34985021 -149303641 - L3 LINE CR1 -715 862 704 422 314 144 15 chr4 34985195 34985466 -149303196 + L2 LINE L2 3005 3310 -3 333 356 17 0 chr4 34985590 34985705 -149302957 - L2 LINE L2 -6 3307 3191 698 257 50 0 chr4 34986307 34986509 -149302153 + MER82 DNA MER2_type 6 217 -436 183 102 41 20 chr4 34986513 34986562 -149302100 + (TA)n Simple_repeat Simple_repeat 2 51 0 1199 254 71 32 chr4 34986853 34987119 -149301543 + MER82 DNA MER2_type 201 489 -164 1863 166 0 0 chr4 34987119 34987426 -149301236 + AluSq SINE Alu 1 307 0 1199 254 71 32 chr4 34987426 34987536 -149301126 + MER82 DNA MER2_type 489 593 -60 325 82 41 0 chr4 34987536 34987585 -149301077 - MLT2A2 LTR ERVL 0 453 403 5552 118 14 3 chr4 34987923 34989030 -149299632 - L1PA15 LINE L1 -3 6162 5034 1244 226 8 0 chr4 34989030 34989291 -149299371 - L1P LINE L1 -2429 3717 3455 190 276 26 26 chr4 34990019 34990095 -149298567 + L3 LINE CR1 835 910 -667 29 47 0 0 chr4 34991076 34991119 -149297543 + AT_rich Low_complexity Low_complexity 1 43 0 646 189 167 0 chr4 34991760 34991940 -149296722 + L1MB2 LINE L1 5953 6162 -9 1300 258 27 46 chr4 34992348 34993188 -149295474 + L1PA15-16 LINE L1 697 1527 -4676 2294 106 0 3 chr4 34993188 34993500 -149295162 + AluY SINE Alu 1 311 0 1300 258 27 46 chr4 34993500 34993550 -149295112 + L1PA15-16 LINE L1 1527 1576 -4627 2150 60 19 48 chr4 34994127 34994442 -149294220 + AluY SINE Alu 1 306 -5 213 313 153 14 chr4 34995416 34995560 -149293102 - MIR SINE MIR 0 262 99 1041 141 78 0 chr4 34995705 34995897 -149292765 - L1MA4A LINE L1 -11 6292 6086 1609 210 58 20 chr4 34996214 34996662 -149292000 - MER31B LTR ERV1 0 466 2 21 0 0 0 chr4 34998396 34998417 -149290245 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 34999152 34999181 -149289481 + AT_rich Low_complexity Low_complexity 1 29 0 600 123 0 0 chr4 34999380 34999494 -149289168 + (CA)n Simple_repeat Simple_repeat 2 115 0 1908 132 0 30 chr4 34999610 34999906 -149288756 - AluSx SINE Alu -25 287 1 194 62 31 0 chr4 34999936 34999968 -149288694 + (TA)n Simple_repeat Simple_repeat 2 34 0 645 221 7 52 chr4 35000746 35000900 -149287762 + MER87 LTR ERV1 1 147 -394 3563 76 6 4 chr4 35000900 35001385 -149287277 - L1PA8 LINE L1 -3 6169 5684 2207 66 3 3 chr4 35001485 35001772 -149286890 - L1PA8 LINE L1 -470 5684 5398 1722 212 57 16 chr4 35001772 35002159 -149286503 + MER87 LTR ERV1 139 541 0 2091 120 52 63 chr4 35002383 35002825 -149285837 - LTR23 LTR ERV1 0 437 1 3928 206 31 37 chr4 35002898 35003715 -149284947 + MER21B LTR ERV1 3 814 -49 311 64 0 21 chr4 35004595 35004642 -149284020 + (TA)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chr4 35004702 35004724 -149283938 + AT_rich Low_complexity Low_complexity 1 22 0 38 81 0 0 chr4 35005245 35005332 -149283330 + AT_rich Low_complexity Low_complexity 1 87 0 2124 150 22 8 chr4 35005771 35006130 -149282532 - THE1B LTR MaLR 0 364 1 264 394 69 12 chr4 35006194 35006354 -149282308 + L2 LINE L2 3104 3272 0 208 183 17 17 chr4 35007323 35007383 -149281279 + (TA)n Simple_repeat Simple_repeat 2 61 0 2108 51 0 104 chr4 35007455 35007798 -149280864 + AluY SINE Alu 1 310 0 225 250 50 20 chr4 35008784 35008884 -149279778 + L1ME3 LINE L1 5838 5940 -226 242 246 98 25 chr4 35009028 35009158 -149279504 + L1ME3 LINE L1 5928 6074 -96 6578 234 23 27 chr4 35009548 35012020 -149276642 - L1PA13 LINE L1 -2929 3868 1401 3320 285 26 19 chr4 35012010 35012895 -149275767 - L1PA13 LINE L1 -5896 891 1 * 197 323 108 46 chr4 35015006 35015121 -149273541 - L2 LINE L2 -2 3311 3178 2093 88 4 0 chr4 35015121 35015394 -149273268 + AluSx SINE Alu 25 298 -14 197 323 108 46 chr4 35015394 35015473 -149273189 - L2 LINE L2 -135 3178 3105 1408 258 67 0 chr4 35016114 35016474 -149272188 + MLT1F1 LTR MaLR 184 567 0 1144 291 17 17 chr4 35016474 35016893 -149271769 + L1ME3 LINE L1 5737 6155 -7 32 57 0 0 chr4 35016930 35016983 -149271679 + AT_rich Low_complexity Low_complexity 1 53 0 585 299 61 102 chr4 35018879 35019093 -149269569 - L2 LINE L2 -745 2569 2348 2200 130 120 5 chr4 35019093 35019477 -149269185 + MSTA LTR MaLR 1 428 0 585 299 61 102 chr4 35019477 35019816 -149268846 - L2 LINE L2 -966 2348 2053 3951 34 0 0 chr4 35019816 35020286 -149268376 + L1PA3 LINE L1 5683 6152 -3 585 299 61 102 chr4 35020286 35020498 -149268164 - L2 LINE L2 -1261 2053 1834 591 339 31 8 chr4 35020529 35020786 -149267876 + LTR16B LTR ERVL 72 334 -130 2144 119 122 13 chr4 35023672 35024003 -149264659 + MSTA LTR MaLR 1 381 -47 3842 117 41 15 chr4 35024003 35024385 -149264277 - L1PA11 LINE L1 0 6174 5769 2004 88 51 14 chr4 35024385 35024679 -149263983 - AluY SINE Alu -6 305 1 3842 117 41 15 chr4 35024679 35024903 -149263759 - L1PA11 LINE L1 -405 5769 5552 2144 119 122 13 chr4 35024903 35024957 -149263705 + MSTA LTR MaLR 381 428 0 22 0 0 0 chr4 35025670 35025692 -149262970 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 35026547 35026568 -149262094 + AT_rich Low_complexity Low_complexity 1 21 0 801 240 93 0 chr4 35027582 35027786 -149260876 - MER58A DNA MER1_type 0 224 2 403 220 22 0 chr4 35028117 35028208 -149260454 + MER82 DNA MER2_type 2 94 -559 276 30 0 0 chr4 35028219 35028252 -149260410 + (CA)n Simple_repeat Simple_repeat 2 34 0 355 369 20 0 chr4 35028292 35028441 -149260221 - MIR SINE MIR -109 153 2 459 288 186 11 chr4 35028471 35028648 -149260014 + MER82 DNA MER2_type 444 651 -2 318 280 84 44 chr4 35028678 35028974 -149259688 - L1ME3 LINE L1 -211 5951 5644 605 133 0 0 chr4 35029246 35029344 -149259318 - L1PA10 LINE L1 -2 6166 6069 941 237 81 38 chr4 35030112 35030509 -149258153 + MER96B DNA MER1_type 4 417 0 317 344 47 0 chr4 35030511 35030639 -149258023 - L1MEd LINE L1 -5385 734 601 809 193 20 0 chr4 35031154 35031304 -149257358 - MLT1A1 LTR MaLR -56 309 157 359 252 130 9 chr4 35031695 35031810 -149256852 + MIR SINE MIR 59 187 -75 391 326 98 68 chr4 35031868 35032402 -149256260 - L2 LINE L2 -12 3301 2757 449 204 0 164 chr4 35032411 35032631 -149256031 - MLT2B1 LTR ERVL -1 519 336 * 1117 254 9 97 chr4 35032607 35033071 -149255591 - MLT2B1 LTR ERVL -97 423 1 984 268 84 39 chr4 35033078 35033493 -149255169 - L2 LINE L2 -571 2743 2310 245 29 0 29 chr4 35035124 35035159 -149253503 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 329 285 16 16 chr4 35036328 35036451 -149252211 + CT-rich Low_complexity Low_complexity 2 124 0 6857 114 0 9 chr4 35036502 35037584 -149251078 - L1P LINE L1 -2346 3800 2729 2245 117 11 0 chr4 35037584 35037933 -149250729 + L1PA8 LINE L1 5818 6171 -1 187 272 40 72 chr4 35038299 35038313 -149250349 - MIR SINE MIR -2 260 247 1998 136 0 11 chr4 35038313 35038627 -149250035 + AluSx SINE Alu 1 311 0 187 272 40 72 chr4 35038627 35038736 -149249926 - MIR SINE MIR -15 247 140 231 363 49 0 chr4 35038772 35038874 -149249788 + MIR SINE MIR 156 262 0 247 156 0 0 chr4 35038934 35038979 -149249683 + L1PA15 LINE L1 5987 6031 -134 1860 182 16 16 chr4 35039558 35039926 -149248736 - L1PA15 LINE L1 -13 6152 5785 2703 243 56 40 chr4 35040648 35040965 -149247697 - L1MB5 LINE L1 0 6410 6100 2464 61 0 3 chr4 35040965 35041275 -149247387 + AluY SINE Alu 1 309 -2 2703 243 56 40 chr4 35041275 35042154 -149246508 - L1MB5 LINE L1 -310 6100 5183 1560 240 14 6 chr4 35042154 35042516 -149246146 + MLT1A1 LTR MaLR 1 365 0 2703 243 56 40 chr4 35042516 35042942 -149245720 - L1MB5 LINE L1 -1227 5183 4765 1299 255 88 20 chr4 35042961 35043369 -149245293 - MLT2B3 LTR ERVL -118 436 1 1541 256 92 17 chr4 35043369 35044011 -149244651 - L1MB5 LINE L1 -1592 4790 4101 2007 143 57 20 chr4 35044016 35044367 -149244295 - THE1B LTR MaLR 0 364 1 11102 109 14 0 chr4 35044370 35045925 -149242737 - THE1B-int LTR MaLR -3 1577 1 1911 140 39 16 chr4 35045925 35046232 -149242430 - THE1B LTR MaLR 0 364 51 847 225 5 132 chr4 35046254 35046640 -149242022 - L1MB5 LINE L1 -2311 4071 3735 2927 251 49 36 chr4 35046691 35048857 -149239805 - L1MB5 LINE L1 -3515 2867 566 567 295 112 18 chr4 35048951 35049290 -149239372 - L1MB5 LINE L1 -5983 401 31 22 35 0 0 chr4 35049926 35049955 -149238707 + AT_rich Low_complexity Low_complexity 1 29 0 273 75 0 0 chr4 35050123 35050163 -149238499 + (CA)n Simple_repeat Simple_repeat 2 41 0 794 231 24 50 chr4 35050212 35050548 -149238114 - MER96B DNA MER1_type? 0 417 14 213 108 0 0 chr4 35051004 35051041 -149237621 + (CA)n Simple_repeat Simple_repeat 1 37 0 273 128 0 0 chr4 35051163 35051210 -149237452 + (TCCA)n Simple_repeat Simple_repeat 4 50 0 313 264 107 8 chr4 35051263 35051384 -149237278 + L1MC4a LINE L1 6171 6303 -1505 * 1548 205 49 3 chr4 35051379 35051745 -149236917 - L1 LINE L1 -2076 4772 4390 646 236 11 6 chr4 35051739 35051913 -149236749 - L1 LINE L1 -3068 3780 3606 * 1771 175 0 0 chr4 35051915 35052206 -149236456 - AluJb SINE Alu -21 291 1 411 212 0 5 chr4 35052229 35052334 -149236328 - L1 LINE L1 -3218 3630 3529 323 204 68 0 chr4 35052348 35052480 -149236182 + (TTCA)n Simple_repeat Simple_repeat 3 143 0 7838 231 93 54 chr4 35052495 35055794 -149232868 - L1 LINE L1 -3235 3613 184 22 35 0 0 chr4 35056011 35056040 -149232622 + AT_rich Low_complexity Low_complexity 1 29 0 316 351 117 15 chr4 35056405 35056610 -149232052 - MIR SINE MIR -13 249 24 14409 154 47 10 chr4 35056806 35059427 -149229235 - Tigger2 DNA MER2_type 0 2718 1 262 302 55 0 chr4 35059428 35059519 -149229143 - MIR SINE MIR -66 142 58 24 32 0 0 chr4 35059852 35059883 -149228779 + AT_rich Low_complexity Low_complexity 1 31 0 298 397 0 9 chr4 35061700 35061816 -149226846 + MIR SINE MIR 20 134 -74 221 116 0 23 chr4 35062171 35062214 -149226448 + (GAAA)n Simple_repeat Simple_repeat 3 44 0 225 0 0 0 chr4 35062781 35062806 -149225856 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 2004 134 0 7 chr4 35062808 35063091 -149225571 - AluSx SINE Alu -30 282 2 194 248 69 69 chr4 35063774 35063875 -149224787 - MIR3 SINE MIR -14 194 94 1696 173 73 22 chr4 35065536 35065905 -149222757 - MLT1B LTR MaLR 0 390 3 22 94 0 0 chr4 35065926 35065990 -149222672 + AT_rich Low_complexity Low_complexity 1 64 0 33 25 0 0 chr4 35066361 35066401 -149222261 + AT_rich Low_complexity Low_complexity 1 40 0 330 363 28 28 chr4 35069225 35069404 -149219258 + HAL1b LINE L1 90 268 -1080 466 306 54 7 chr4 35069585 35069732 -149218930 + MIR SINE MIR 14 167 -95 23 68 0 0 chr4 35070232 35070276 -149218386 + AT_rich Low_complexity Low_complexity 1 44 0 888 174 7 0 chr4 35070754 35070903 -149217759 + AluJb SINE Alu 154 303 -9 1976 160 39 24 chr4 35071030 35071298 -149217364 + MLT1B LTR MaLR 1 278 -112 2139 117 0 0 chr4 35071298 35071607 -149217055 + AluSc SINE Alu 1 309 0 1976 160 39 24 chr4 35071607 35071719 -149216943 + MLT1B LTR MaLR 278 387 -3 4140 124 56 27 chr4 35071722 35072489 -149216173 - Tigger3(Golem) DNA MER2_type -1 3028 2240 562 219 9 0 chr4 35072492 35072597 -149216065 - Tigger3(Golem) DNA MER2_type -2922 107 2 688 307 118 52 chr4 35073252 35074457 -149214205 + L1MEc LINE L1 206 1490 -5073 528 329 93 7 chr4 35074479 35074929 -149213733 + L1MEc LINE L1 1576 2064 -4499 306 331 51 17 chr4 35075333 35075511 -149213151 + MLT1L LTR MaLR 38 221 -394 21 71 0 0 chr4 35077314 35077356 -149211306 + AT_rich Low_complexity Low_complexity 1 42 0 1578 222 39 66 chr4 35077506 35077993 -149210669 + MER31A LTR ERV1 4 477 -8 26 50 0 0 chr4 35078230 35078270 -149210392 + AT_rich Low_complexity Low_complexity 1 40 0 2227 97 10 3 chr4 35078440 35078857 -149209805 + AluSp SINE Alu 1 419 0 813 192 66 0 chr4 35079589 35079740 -149208922 - MLT1B LTR MaLR -229 161 1 189 0 0 0 chr4 35079988 35080009 -149208653 + (GAA)n Simple_repeat Simple_repeat 1 21 0 32 26 0 0 chr4 35080467 35080506 -149208156 + AT_rich Low_complexity Low_complexity 1 39 0 2584 157 43 14 chr4 35080506 35081021 -149207641 - L1MA9 LINE L1 0 6312 5783 292 123 15 15 chr4 35081021 35081086 -149207576 + (TCTA)n Simple_repeat Simple_repeat 3 67 0 1856 176 6 3 chr4 35081088 35081417 -149207245 - L1MA9 LINE L1 -514 5798 5469 * 2245 209 71 30 chr4 35081399 35082060 -149206602 - L1MA9 LINE L1 -2481 3665 2978 2711 237 20 24 chr4 35082060 35082866 -149205796 + L1MA9 LINE L1 2402 3206 -3176 27 0 0 0 chr4 35083129 35083156 -149205506 + AT_rich Low_complexity Low_complexity 1 27 0 1988 136 0 0 chr4 35083272 35083559 -149205103 - AluSx SINE Alu -15 297 11 1625 224 102 43 chr4 35083692 35084440 -149204222 - LTR1B LTR ERV1 -1 784 1 675 161 8 15 chr4 35084719 35084849 -149203813 + AluSq/x SINE Alu 5 133 -180 616 297 91 7 chr4 35086644 35086920 -149201742 + LTR33A LTR ERVL 225 523 0 232 336 45 9 chr4 35087581 35087691 -149200971 - MIR SINE MIR -24 238 125 708 238 33 99 chr4 35089030 35089333 -149199329 + MLT1B LTR MaLR 103 385 -5 21 0 0 0 chr4 35090032 35090053 -149198609 + AT_rich Low_complexity Low_complexity 1 21 0 368 304 116 29 chr4 35090781 35090919 -149197743 - L2 LINE L2 0 3272 3123 25 31 0 0 chr4 35091047 35091079 -149197583 + AT_rich Low_complexity Low_complexity 1 32 0 180 265 0 0 chr4 35092774 35092808 -149195854 - L3 LINE CR1 -1456 121 88 4705 58 3 0 chr4 35093350 35093939 -149194723 - LTR10C LTR ERV1 0 591 1 357 62 0 0 chr4 35094159 35094207 -149194455 + (TC)n Simple_repeat Simple_repeat 1 48 0 517 282 17 55 chr4 35094539 35094720 -149193942 - L2 LINE L2 -224 3089 2916 1598 219 14 19 chr4 35094851 35095211 -149193451 - MLT1A1 LTR MaLR -7 358 1 214 304 193 22 chr4 35095901 35096082 -149192580 + MIR SINE MIR 40 251 -11 27 0 0 0 chr4 35096851 35096878 -149191784 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr4 35097040 35097061 -149191601 + AT_rich Low_complexity Low_complexity 1 21 0 198 103 0 0 chr4 35097975 35098004 -149190658 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 2092 100 3 14 chr4 35098093 35098383 -149190279 + AluSp SINE Alu 1 287 -26 244 225 50 25 chr4 35098423 35098503 -149190159 + L1MC4 LINE L1 6614 6695 -1347 399 309 0 0 chr4 35098549 35098727 -149189935 + (CATG)n Simple_repeat Simple_repeat 2 179 0 26 74 0 0 chr4 35099418 35099472 -149189190 + AT_rich Low_complexity Low_complexity 1 54 0 208 353 26 17 chr4 35100009 35100125 -149188537 + MIR SINE MIR 132 248 -14 634 254 105 22 chr4 35100180 35100408 -149188254 + LTR16C LTR ERVL 238 484 -7 304 258 11 22 chr4 35101448 35101537 -149187125 + L1PA15-16 LINE L1 21 108 -6754 * 3264 276 31 29 chr4 35101529 35102665 -149185997 + L1PA15-16 LINE L1 496 1633 -5230 * 5451 219 24 6 chr4 35102636 35105642 -149183020 + L1PB3 LINE L1 1 3196 -3007 4434 106 9 3 chr4 35105634 35106288 -149182374 + L1PA8 LINE L1 4316 4973 -1173 * 6467 84 8 8 chr4 35106389 35107346 -149181316 + L1PA8 LINE L1 5216 6172 0 8728 192 32 26 chr4 35107355 35110364 -149178298 + L1PB3 LINE L1 3179 6209 -2 21 0 0 0 chr4 35110369 35110390 -149178272 + AT_rich Low_complexity Low_complexity 1 21 0 1471 198 4 0 chr4 35110619 35110887 -149177775 + L1PBa LINE L1 1376 1644 -5219 * 2918 198 13 30 chr4 35110854 35111476 -149177186 + L1PB2 LINE L1 8 618 -5586 319 203 43 0 chr4 35111477 35111546 -149177116 - L1PBb LINE L1 -6099 105 34 * 11371 238 26 26 chr4 35111526 35111594 -149177068 + L1PB2 LINE L1 606 673 -5530 180 0 0 0 chr4 35111594 35111614 -149177048 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 11371 238 26 26 chr4 35111614 35112516 -149176146 + L1PB2 LINE L1 673 1574 -4629 1795 188 122 8 chr4 35112516 35112900 -149175762 + MSTA LTR MaLR 1 428 0 2509 139 3 0 chr4 35112903 35113284 -149175378 + MSTA-int LTR MaLR 4 385 -1195 8579 190 27 3 chr4 35112904 35114512 -149174150 + MSTA-int LTR MaLR 5 1651 0 11371 238 26 26 chr4 35113284 35114512 -149174150 + L1PB2 LINE L1 1576 2803 -3400 1719 163 137 11 chr4 35114512 35114892 -149173770 + MSTA LTR MaLR 1 428 0 11371 238 26 26 chr4 35114892 35117158 -149171504 + L1PB2 LINE L1 2803 3929 -2274 2324 78 7 3 chr4 35117158 35117466 -149171196 + AluY SINE Alu 3 311 0 11371 238 26 26 chr4 35117466 35118549 -149170113 + L1PB2 LINE L1 3929 5011 -1192 291 119 22 50 chr4 35118549 35118633 -149170029 + AluSc SINE Alu 1 46 -262 295 222 0 16 chr4 35118780 35118843 -149169819 + AluSc SINE Alu 7 68 -240 1649 128 0 8 chr4 35118845 35119111 -149169551 + AluSc SINE Alu 54 317 0 5376 153 7 24 chr4 35119118 35120291 -149168371 + L1PB2 LINE L1 5050 6206 -2 246 250 9 65 chr4 35120587 35120695 -149167967 + A-rich Low_complexity Low_complexity 2 103 0 246 352 66 0 chr4 35120832 35120923 -149167739 - L2 LINE L2 -1 3312 3216 188 297 31 62 chr4 35121993 35122121 -149166541 - L2 LINE L2 -605 2709 2586 275 365 13 6 chr4 35122476 35122632 -149166030 + L2 LINE L2 2149 2305 -1009 1458 160 39 47 chr4 35122677 35122762 -149165900 - Charlie5 DNA MER1_type -8 2616 2532 189 0 0 0 chr4 35122762 35122783 -149165879 + (TTTAA)n Simple_repeat Simple_repeat 3 23 0 653 93 70 78 chr4 35122788 35122917 -149165745 - L1MA9 LINE L1 -5 6307 6180 1458 160 39 47 chr4 35122917 35123207 -149165455 - Charlie5 DNA MER1_type -96 2528 2238 564 340 220 0 chr4 35123307 35123497 -149165165 + L2 LINE L2 2314 2461 -853 202 54 27 27 chr4 35123497 35123534 -149165128 + (TA)n Simple_repeat Simple_repeat 1 37 0 564 340 220 0 chr4 35123534 35123716 -149164946 + L2 LINE L2 2461 2768 -546 23 33 0 0 chr4 35123716 35123746 -149164916 + AT_rich Low_complexity Low_complexity 1 30 0 671 294 0 16 chr4 35124003 35124190 -149164472 + MIR SINE MIR 63 246 -16 3063 200 42 83 chr4 35124500 35125509 -149163153 + LTR5 LTR ERVK 1 967 -2 498 124 124 10 chr4 35125587 35125684 -149162978 - MER101B LTR ERV1 -462 108 1 282 254 63 48 chr4 35125689 35125815 -149162847 + L2 LINE L2 3168 3295 -18 2939 114 14 0 chr4 35125882 35126310 -149162352 + MER57B LTR ERV1 1 434 0 3807 172 30 11 chr4 35126310 35126974 -149161688 + MER57B-int LTR ERV1 1 677 -6860 1302 97 0 0 chr4 35126973 35127148 -149161514 + MER57B-int LTR ERV1 793 967 -6570 * 3202 137 25 27 chr4 35127142 35127659 -149161003 + MER57B-int LTR ERV1 1346 1861 -5676 * 11031 136 34 13 chr4 35127656 35128727 -149159935 + MER57B-int LTR ERV1 5321 6447 -1090 2136 130 0 7 chr4 35128727 35129028 -149159634 - AluSc SINE Alu -10 299 1 11031 136 34 13 chr4 35129028 35129748 -149158914 + MER57B-int LTR ERV1 6447 7150 -387 745 131 25 8 chr4 35129748 35129870 -149158792 + LTR54B LTR ERV1 5 128 -370 1462 100 130 4 chr4 35129882 35130113 -149158549 + MER57B-int LTR ERV1 7278 7537 0 2916 127 5 0 chr4 35130113 35130545 -149158117 + MER57B LTR ERV1 1 434 0 309 306 0 35 chr4 35130861 35130946 -149157716 + MIR3 SINE MIR 87 168 -40 232 255 0 0 chr4 35130958 35131009 -149157653 + MER34C LTR ERV1 40 90 -495 1054 236 57 67 chr4 35131029 35131502 -149157160 + LTR29 LTR ERV1 137 644 0 2605 35 0 6 chr4 35131725 35132037 -149156625 - AluY SINE Alu -1 310 1 1979 173 5 22 chr4 35132228 35132597 -149156065 - MER4E LTR ERV1 0 779 417 626 308 66 31 chr4 35132614 35132900 -149155762 - L2 LINE L2 -15 3298 3003 3245 84 29 5 chr4 35133138 35133580 -149155082 - MLT2A2 LTR ERVL 0 453 1 44 35 0 0 chr4 35134187 35134245 -149154417 + AT_rich Low_complexity Low_complexity 1 58 0 180 0 0 0 chr4 35135645 35135665 -149152997 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1889 149 0 4 chr4 35135668 35135949 -149152713 - AluSx SINE Alu -32 280 1 210 37 0 0 chr4 35135999 35136026 -149152636 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 * 378 0 0 0 chr4 35136025 35136067 -149152595 + (TA)n Simple_repeat Simple_repeat 2 43 0 558 330 21 11 chr4 35136529 35136720 -149151942 - MIR SINE MIR -33 229 37 252 0 0 0 chr4 35138005 35138033 -149150629 + (CA)n Simple_repeat Simple_repeat 2 29 0 2562 156 42 0 chr4 35138394 35138818 -149149844 + L1M1 LINE L1 1756 2197 -5368 * 4668 114 35 3 chr4 35138810 35139564 -149149098 + L1M1 LINE L1 2488 3265 -4300 236 204 20 0 chr4 35139869 35139918 -149148744 - L2 LINE L2 0 3313 3264 344 264 112 8 chr4 35139961 35140086 -149148576 - LTR16C LTR ERVL 0 491 354 256 304 29 0 chr4 35140125 35140194 -149148468 - LTR16C LTR ERVL -202 289 219 246 265 143 41 chr4 35140206 35140304 -149148358 - LTR16C LTR ERVL -383 108 1 246 267 22 67 chr4 35140582 35140672 -149147990 - L2 LINE L2 -2 3311 3226 274 306 9 45 chr4 35140916 35141027 -149147635 + MER5A DNA MER1_type 55 161 -28 6652 112 26 25 chr4 35141120 35142190 -149146472 + MER11C LTR ERVK 1 1071 0 22 35 0 0 chr4 35142558 35142587 -149146075 + AT_rich Low_complexity Low_complexity 1 29 0 315 0 0 0 chr4 35143020 35143055 -149145607 + (TG)n Simple_repeat Simple_repeat 2 36 0 859 157 0 0 chr4 35144823 35144957 -149143705 - FRAM SINE Alu -42 134 1 323 239 14 14 chr4 35145665 35145736 -149142926 - MER2 DNA MER2_type -5 340 270 907 191 34 6 chr4 35145780 35145958 -149142704 - MER2 DNA MER2_type -159 186 4 27 0 0 0 chr4 35146739 35146766 -149141896 + AT_rich Low_complexity Low_complexity 1 27 0 373 278 6 23 chr4 35146935 35147111 -149141551 - L1M4 LINE L1 -1087 5059 4887 236 303 0 0 chr4 35147658 35147747 -149140915 + L1MC4 LINE L1 6614 6702 -1340 2128 90 138 14 chr4 35147756 35148112 -149140550 - MLT2A1 LTR ERVL -44 400 1 1980 274 90 71 chr4 35149120 35150190 -149138472 + MER52A LTR ERV1 666 1755 0 26 64 0 0 chr4 35151361 35151408 -149137254 + AT_rich Low_complexity Low_complexity 1 47 0 23 0 0 0 chr4 35152485 35152508 -149136154 + AT_rich Low_complexity Low_complexity 1 23 0 9038 273 44 17 chr4 35152538 35157099 -149131563 + L1PA12 LINE L1 881 5559 -2025 4242 228 17 9 chr4 35157083 35158135 -149130527 - L1 LINE L1 -952 5194 4135 * 1154 201 18 36 chr4 35158130 35158408 -149130254 + L1 LINE L1 3866 4138 -2008 * 316 284 83 61 chr4 35158413 35158642 -149130020 + L1ME2 LINE L1 5921 6154 -10 232 208 57 0 chr4 35158802 35158855 -149129807 + L1MC4 LINE L1 7924 7979 -63 1559 256 85 11 chr4 35158921 35159448 -149129214 + L1ME2 LINE L1 5599 6164 0 304 283 71 30 chr4 35159586 35159685 -149128977 - MER5A DNA MER1_type -77 112 10 335 355 91 14 chr4 35159689 35159985 -149128677 + L3 LINE CR1 1180 1498 -79 663 200 0 15 chr4 35159985 35160120 -149128542 + FLAM_A SINE Alu 1 133 0 354 23 0 0 chr4 35160164 35160207 -149128455 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 82 0 0 chr4 35160404 35160453 -149128209 + AT_rich Low_complexity Low_complexity 1 49 0 24 106 0 0 chr4 35161944 35162038 -149126624 + AT_rich Low_complexity Low_complexity 1 94 0 6090 55 0 0 chr4 35162346 35163103 -149125559 - L1PA5 LINE L1 -2 6152 5396 227 241 0 96 chr4 35164448 35164531 -149124131 - MIR SINE MIR -71 191 117 217 346 149 9 chr4 35164526 35164633 -149124029 + MIR SINE MIR 22 143 -119 * 24 32 0 0 chr4 35164713 35164744 -149123918 + AT_rich Low_complexity Low_complexity 1 31 0 23 54 0 0 chr4 35166088 35166125 -149122537 + AT_rich Low_complexity Low_complexity 1 37 0 37 23 0 0 chr4 35166958 35167002 -149121660 + AT_rich Low_complexity Low_complexity 1 44 0 291 339 35 58 chr4 35167105 35167279 -149121383 + MIR SINE MIR 1 170 -92 2055 140 0 9 chr4 35167790 35168105 -149120557 + AluSx SINE Alu 1 312 0 1954 138 3 3 chr4 35168695 35169000 -149119662 - AluSx SINE Alu 0 305 1 27 73 0 0 chr4 35169954 35170009 -149118653 + AT_rich Low_complexity Low_complexity 1 55 0 24 0 0 0 chr4 35170697 35170721 -149117941 + AT_rich Low_complexity Low_complexity 1 24 0 1033 268 94 45 chr4 35172014 35172497 -149116165 + MLT1H LTR MaLR 1 549 0 317 225 42 0 chr4 35173387 35173458 -149115204 + MER20 DNA MER1_type 2 75 -144 1051 270 68 36 chr4 35173531 35174368 -149114294 + L1MA7 LINE L1 2008 2952 -4544 452 260 29 10 chr4 35174368 35174472 -149114190 - Tigger7 DNA MER2_type 0 2487 2382 890 291 5 0 chr4 35174483 35174706 -149113956 - Tigger7 DNA MER2_type -2263 224 1 685 255 48 13 chr4 35174712 35174943 -149113719 + L1MA7 LINE L1 2841 3079 -4486 520 266 73 43 chr4 35174972 35175205 -149113457 + L1MA7 LINE L1 3634 3873 -3692 513 245 23 24 chr4 35175245 35175419 -149113243 - L1M4 LINE L1 -3834 2312 2131 8430 205 47 38 chr4 35175440 35177587 -149111075 + L1MA7 LINE L1 4125 6251 -1459 1926 132 7 0 chr4 35177587 35177860 -149110802 + AluSp SINE Alu 16 290 -23 8430 205 47 38 chr4 35177860 35178897 -149109765 + L1MA7 LINE L1 6251 7427 -283 2003 132 0 22 chr4 35178897 35179191 -149109471 + AluSx SINE Alu 1 289 -23 801 31 0 0 chr4 35179191 35179287 -149109375 + (GAGAA)n Simple_repeat Simple_repeat 2 97 0 2003 132 0 22 chr4 35179287 35179303 -149109359 + AluSx SINE Alu 289 304 -8 8430 205 47 38 chr4 35179303 35179584 -149109078 + L1MA7 LINE L1 7427 7704 -6 885 135 0 0 chr4 35180173 35180299 -149108363 - FLAM_C SINE Alu -17 126 1 209 345 78 17 chr4 35181146 35181262 -149107400 - L2 LINE L2 0 3313 3191 197 343 120 0 chr4 35181340 35181448 -149107214 - L2 LINE L2 -9 3263 3143 314 328 175 26 chr4 35181762 35182070 -149106592 - L2 LINE L2 -737 2577 2224 602 157 0 44 chr4 35184227 35184386 -149104276 + GA-rich Low_complexity Low_complexity 4 155 0 22 35 0 0 chr4 35186130 35186159 -149102503 + AT_rich Low_complexity Low_complexity 1 29 0 3160 203 29 30 chr4 35186324 35187083 -149101579 - L1MB7 LINE L1 -12 6172 5415 21 0 0 0 chr4 35187174 35187195 -149101467 + AT_rich Low_complexity Low_complexity 1 21 0 242 29 29 0 chr4 35187335 35187370 -149101292 + (TA)n Simple_repeat Simple_repeat 1 36 0 2066 109 26 7 chr4 35187641 35187944 -149100718 + AluSx SINE Alu 4 312 0 1731 160 98 3 chr4 35188777 35189145 -149099517 + MER57A LTR ERV1 1 403 0 3457 214 9 55 chr4 35189153 35190009 -149098653 + MER57A-int LTR ERV1 9 825 -6712 221 241 36 43 chr4 35190082 35190179 -149098483 - MIR SINE MIR -95 113 16 2521 42 0 0 chr4 35190349 35190659 -149098003 + AluY SINE Alu 1 310 -1 455 239 148 68 chr4 35191272 35191536 -149097126 + MER34C LTR ERV1 157 441 -144 305 191 0 0 chr4 35191571 35191639 -149097023 + MER57A-int LTR ERV1 1120 1187 -3684 452 211 40 80 chr4 35191743 35191918 -149096744 + LTR49-int LTR ERV1 3088 3255 -3076 1498 188 26 10 chr4 35192024 35192327 -149096335 + LTR49-int LTR ERV1 5283 5590 -1947 1002 54 27 0 chr4 35192338 35192487 -149096175 + (TTTC)n Simple_repeat Simple_repeat 2 154 0 1861 104 0 0 chr4 35192502 35192743 -149095919 - AluSc SINE Alu -68 241 1 3108 211 24 22 chr4 35192747 35193420 -149095242 + LTR49-int LTR ERV1 6469 7142 -395 591 150 15 45 chr4 35193420 35193553 -149095109 + LTR54B LTR ERV1 1 129 -369 261 200 50 0 chr4 35193607 35193667 -149094995 + LTR54B LTR ERV1 226 288 -210 1697 88 121 4 chr4 35194895 35195144 -149093518 + AluSc SINE Alu 1 278 -31 186 43 0 0 chr4 35195148 35195171 -149093491 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 363 323 31 12 chr4 35195982 35196166 -149092496 - MIR3 SINE MIR -66 142 4 1336 166 154 37 chr4 35196271 35196596 -149092066 - MLT1A1 LTR MaLR 0 365 3 2178 208 13 23 chr4 35196895 35197145 -149091517 + MLT1C LTR MaLR 1 245 -222 1989 138 128 10 chr4 35197145 35197528 -149091134 + MSTA LTR MaLR 1 428 0 2178 208 13 23 chr4 35197528 35197749 -149090913 + MLT1C LTR MaLR 245 467 0 279 0 0 0 chr4 35198747 35198778 -149089884 + (CA)n Simple_repeat Simple_repeat 2 32 0 374 310 26 0 chr4 35199573 35199686 -149088976 + MIR3 SINE MIR 87 202 -6 333 264 14 89 chr4 35199790 35199958 -149088704 - MIR SINE MIR -42 220 64 271 303 48 101 chr4 35199993 35200409 -149088253 + MLT1I LTR MaLR 9 402 -7 23 68 0 0 chr4 35200722 35200766 -149087896 + AT_rich Low_complexity Low_complexity 1 44 0 463 283 24 6 chr4 35200792 35200958 -149087704 - MLT2E LTR ERVL -8 620 452 952 308 26 4 chr4 35201032 35201298 -149087364 - MLT2E LTR ERVL -332 296 25 22 0 0 0 chr4 35201436 35201458 -149087204 + AT_rich Low_complexity Low_complexity 1 22 0 214 317 30 0 chr4 35202735 35202836 -149085826 + (TATG)n Simple_repeat Simple_repeat 1 104 0 226 284 14 27 chr4 35203657 35203731 -149084931 - L2 LINE L2 -11 3302 3230 1699 149 67 69 chr4 35203859 35204235 -149084427 + THE1C LTR MaLR 1 375 0 212 143 18 71 chr4 35206684 35206740 -149081922 + GA-rich Low_complexity Low_complexity 2 54 0 328 133 24 0 chr4 35206760 35206843 -149081819 + (TA)n Simple_repeat Simple_repeat 2 86 0 275 379 25 68 chr4 35207412 35207734 -149080928 - L2 LINE L2 0 3272 2965 2021 123 0 32 chr4 35207738 35208048 -149080614 + AluSp SINE Alu 1 300 -13 2062 151 83 8 chr4 35208339 35208737 -149079925 + MSTA LTR MaLR 1 428 0 379 298 43 25 chr4 35209101 35209262 -149079400 + MIR3 SINE MIR 43 206 -2 2123 97 0 39 chr4 35209376 35209684 -149078978 - AluSp SINE Alu -17 296 1 607 240 76 32 chr4 35210028 35210278 -149078384 - LTR33A LTR ERVL 0 523 263 211 323 8 46 chr4 35210459 35210589 -149078073 + L2 LINE L2 2379 2503 -811 368 324 99 32 chr4 35211639 35211892 -149076770 + MLT1I LTR MaLR 134 403 -6 300 224 0 0 chr4 35212694 35212792 -149075870 + (TA)n Simple_repeat Simple_repeat 2 99 0 1428 197 3 28 chr4 35212802 35213091 -149075571 - AluJb SINE Alu -26 286 5 207 0 0 0 chr4 35213546 35213569 -149075093 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 22 35 0 0 chr4 35214056 35214085 -149074577 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 35214200 35214228 -149074434 + AT_rich Low_complexity Low_complexity 1 28 0 751 319 26 63 chr4 35215589 35215940 -149072722 - MLT1H LTR MaLR -199 350 13 1980 127 0 29 chr4 35216349 35216657 -149072005 - AluSg SINE Alu -11 299 1 34 24 0 0 chr4 35216999 35217040 -149071622 + AT_rich Low_complexity Low_complexity 1 41 0 233 402 10 10 chr4 35217106 35217208 -149071454 - MIR SINE MIR -74 134 33 2236 71 47 14 chr4 35217368 35217665 -149070997 + AluY SINE Alu 3 309 -2 2229 91 0 0 chr4 35217751 35218037 -149070625 + AluSx SINE Alu 1 286 -26 419 264 31 8 chr4 35219341 35219470 -149069192 + MER94 DNA DNA 2 133 -1 27 0 0 0 chr4 35219503 35219530 -149069132 + AT_rich Low_complexity Low_complexity 1 27 0 747 242 59 53 chr4 35220305 35220704 -149067958 + MLT1A1 LTR MaLR 1 383 -13 2714 267 20 8 chr4 35221302 35222177 -149066485 - L1PA15-16 LINE L1 -3060 3789 2904 3164 151 34 105 chr4 35222177 35223149 -149065513 + MER52C LTR ERV1 403 1276 -2 437 356 63 3 chr4 35224377 35224431 -149064231 - L2 LINE L2 -98 3215 3166 2130 112 10 0 chr4 35224431 35224726 -149063936 + AluY SINE Alu 1 298 -13 437 356 63 3 chr4 35224726 35224955 -149063707 - L2 LINE L2 -147 3166 2915 1105 246 69 81 chr4 35224992 35225064 -149063598 + MLT1D LTR MaLR 91 162 -343 2505 83 128 2 chr4 35225064 35225462 -149063200 - LTR7 LTR ERV1 -2 448 1 1105 246 69 81 chr4 35225462 35225807 -149062855 + MLT1D LTR MaLR 162 503 -2 396 321 31 13 chr4 35225852 35226076 -149062586 - L2 LINE L2 -1619 1695 1468 1421 71 115 2 chr4 35226142 35226480 -149062182 - LTR7 LTR ERV1 -2 448 1 186 43 0 0 chr4 35227202 35227225 -149061437 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2111 127 3 0 chr4 35227228 35227520 -149061142 + AluSq SINE Alu 1 293 -20 1636 190 44 33 chr4 35228322 35228685 -149059977 - MLT1A2 LTR MaLR 0 374 8 684 308 108 36 chr4 35229003 35230069 -149058593 + L1ME3 LINE L1 3009 4151 -1995 532 302 77 30 chr4 35230358 35230806 -149057856 + L1ME3 LINE L1 4543 5015 -1131 263 206 198 24 chr4 35230943 35231069 -149057593 + L1ME3 LINE L1 5186 5333 -813 33 43 0 0 chr4 35231099 35231146 -149057516 + AT_rich Low_complexity Low_complexity 1 47 0 447 303 111 33 chr4 35231215 35231516 -149057146 + L1ME3 LINE L1 5466 5805 -357 598 312 18 5 chr4 35231516 35231737 -149056925 + MER58A DNA MER1_type 1 224 0 447 303 111 33 chr4 35231737 35231824 -149056838 + L1ME3 LINE L1 5805 5884 -278 2098 104 35 0 chr4 35232275 35232564 -149056098 + AluSp SINE Alu 1 299 -14 232 325 229 0 chr4 35232692 35232858 -149055804 + MIR SINE MIR 40 243 -19 28 0 0 0 chr4 35232917 35232945 -149055717 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 35233442 35233463 -149055199 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr4 35233701 35233724 -149054938 + (T)n Simple_repeat Simple_repeat 1 23 0 204 102 61 0 chr4 35234214 35234263 -149054399 + (TA)n Simple_repeat Simple_repeat 1 52 0 336 24 0 0 chr4 35234571 35234612 -149054050 + (CA)n Simple_repeat Simple_repeat 2 42 0 289 280 0 32 chr4 35234900 35235000 -149053662 - MIR SINE MIR -35 173 80 474 335 13 6 chr4 35236182 35236340 -149052322 - LTR33 LTR ERVL -362 159 1 2636 124 29 7 chr4 35236360 35236779 -149051883 - MSTA LTR MaLR 0 428 1 24 0 0 0 chr4 35237182 35237206 -149051456 + AT_rich Low_complexity Low_complexity 1 24 0 342 205 36 0 chr4 35239146 35239229 -149049433 + L1MC1 LINE L1 6248 6333 0 296 62 0 42 chr4 35239455 35239503 -149049159 + (TTTC)n Simple_repeat Simple_repeat 3 48 0 589 181 35 6 chr4 35239510 35239681 -149048981 + CT-rich Low_complexity Low_complexity 2 177 0 1603 215 0 6 chr4 35239685 35239997 -149048665 - AluJo SINE Alu -2 310 1 184 89 22 22 chr4 35240550 35240595 -149048067 + (TTA)n Simple_repeat Simple_repeat 2 46 0 44 56 0 0 chr4 35240597 35240669 -149047993 + AT_rich Low_complexity Low_complexity 1 72 0 435 321 33 37 chr4 35240755 35240998 -149047664 - L1ME4a LINE L1 -188 5933 5692 217 143 18 71 chr4 35242180 35242236 -149046426 + T-rich Low_complexity Low_complexity 1 53 0 28 0 0 0 chr4 35243475 35243503 -149045159 + AT_rich Low_complexity Low_complexity 1 28 0 1824 130 18 18 chr4 35243750 35244035 -149044627 + AluSx SINE Alu 1 285 -27 222 379 7 14 chr4 35245287 35245432 -149043230 + L3b LINE CR1 1111 1254 -329 3139 169 72 83 chr4 35245866 35246945 -149041717 - L1MA6 LINE L1 -7 6290 5171 425 335 97 5 chr4 35246984 35247169 -149041493 + MIR SINE MIR 61 262 0 405 311 146 33 chr4 35247170 35247382 -149041280 - MIR SINE MIR -26 236 1 348 286 76 54 chr4 35248580 35248804 -149039858 - L1MC4a LINE L1 -1905 5903 5675 2759 19 0 0 chr4 35248974 35249285 -149039377 + AluYa5 SINE Alu 1 311 0 208 254 32 48 chr4 35249662 35249725 -149038937 + L2 LINE L2 3248 3309 -4 2671 190 19 2 chr4 35249803 35250282 -149038380 + MLT2B1 LTR ERVL 1 487 -33 500 366 124 19 chr4 35250481 35251044 -149037618 + L2 LINE L2 943 1564 -1750 23 0 0 0 chr4 35251312 35251335 -149037327 + AT_rich Low_complexity Low_complexity 1 23 0 33 0 0 0 chr4 35254844 35254877 -149033785 + AT_rich Low_complexity Low_complexity 1 33 0 385 102 0 0 chr4 35255066 35255125 -149033537 + Alu SINE Alu 244 302 0 1915 203 20 50 chr4 35255387 35255825 -149032837 - MSTB LTR MaLR -1 425 1 358 288 100 31 chr4 35257866 35258095 -149030567 - L2 LINE L2 -338 2976 2732 276 125 0 0 chr4 35258605 35258645 -149030017 + Alu SINE Alu 1 40 -268 598 118 0 0 chr4 35258645 35258730 -149029932 + AluSg/x SINE Alu 206 290 -20 1607 214 19 3 chr4 35258731 35259054 -149029608 - MER4D LTR ERV1 -28 875 548 3031 162 66 11 chr4 35259165 35259319 -149029343 - MER4D LTR ERV1 -329 574 430 2251 150 28 2 chr4 35259319 35259712 -149028950 - MER57A LTR ERV1 0 403 1 3031 162 66 11 chr4 35259712 35260099 -149028563 - MER4D LTR ERV1 -473 430 3 60 69 0 0 chr4 35260161 35260277 -149028385 + AT_rich Low_complexity Low_complexity 1 116 0 368 55 18 0 chr4 35260297 35260352 -149028310 + (TA)n Simple_repeat Simple_repeat 2 57 0 1657 156 53 14 chr4 35260359 35260642 -149028020 - AluSq SINE Alu -19 294 1 29 0 0 0 chr4 35260651 35260680 -149027982 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 35260783 35260805 -149027857 + AT_rich Low_complexity Low_complexity 1 22 0 536 369 58 14 chr4 35260868 35261299 -149027363 - L1 LINE L1 -743 5403 4954 721 91 0 18 chr4 35261313 35261423 -149027239 + AluY SINE Alu 198 305 -6 2520 233 100 5 chr4 35261518 35262266 -149026396 - MER97a DNA MER1_type? -14 880 62 31 26 0 0 chr4 35263488 35263526 -149025136 + AT_rich Low_complexity Low_complexity 1 38 0 204 231 0 0 chr4 35263935 35263974 -149024688 + (CATA)n Simple_repeat Simple_repeat 2 40 0 243 190 0 52 chr4 35263979 35264037 -149024625 - LTR66 LTR ERVL -171 439 385 316 359 39 32 chr4 35264264 35264420 -149024242 - MIR SINE MIR -78 184 28 2965 221 13 9 chr4 35264574 35265319 -149023343 - L1PA16 LINE L1 -752 5394 4647 * 4012 146 19 5 chr4 35265318 35265988 -149022674 + L1PA16 LINE L1 5402 6081 -85 979 190 20 20 chr4 35266129 35266376 -149022286 - L1 LINE L1 -752 5394 5148 317 172 62 0 chr4 35266374 35266438 -149022224 - L1MA7 LINE L1 -51 6240 6173 * 296 118 191 0 chr4 35266432 35266500 -149022162 + L1PA16 LINE L1 6077 6157 -9 * 998 127 0 20 chr4 35266821 35267014 -149021648 + AluSg/x SINE Alu 137 326 0 22 80 0 0 chr4 35267448 35267498 -149021164 + AT_rich Low_complexity Low_complexity 1 50 0 4184 195 19 8 chr4 35268170 35269695 -149018967 - L1MA7 LINE L1 -42 6249 4669 763 234 206 8 chr4 35270485 35270883 -149017779 - MER69 DNA AcHobo -40 2486 2010 * 1157 309 121 14 chr4 35270875 35271379 -149017283 - MER69 DNA AcHobo -652 574 17 1877 117 26 4 chr4 35272607 35272911 -149015751 - AluSg SINE Alu 0 320 11 23 0 0 0 chr4 35272954 35272977 -149015685 + AT_rich Low_complexity Low_complexity 1 23 0 3237 257 51 38 chr4 35273436 35275175 -149013487 + L1M4b LINE L1 29 2024 -4831 863 255 23 0 chr4 35275196 35275459 -149013203 + L1M4b LINE L1 3080 3348 -3609 2307 105 0 9 chr4 35275461 35275776 -149012886 + AluSx SINE Alu 1 312 0 3903 202 46 1 chr4 35275795 35276641 -149012021 - L1MC2 LINE L1 -11 6333 5450 225 94 0 0 chr4 35277221 35277253 -149011409 + (TA)n Simple_repeat Simple_repeat 1 32 0 293 282 8 8 chr4 35277809 35277926 -149010736 + (TA)n Simple_repeat Simple_repeat 1 117 0 24 32 0 0 chr4 35278140 35278171 -149010491 + AT_rich Low_complexity Low_complexity 1 31 0 339 245 10 31 chr4 35278315 35278413 -149010249 - MIR SINE MIR -119 143 48 838 72 0 0 chr4 35279806 35279917 -149008745 + L1PA6 LINE L1 6044 6154 0 312 258 0 0 chr4 35280041 35280138 -149008524 + (TA)n Simple_repeat Simple_repeat 1 97 0 1410 241 22 22 chr4 35280160 35280525 -149008137 - MLT1A1 LTR MaLR 0 365 1 273 240 66 41 chr4 35281834 35281955 -149006707 + L2 LINE L2 3181 3304 -9 23 0 0 0 chr4 35282544 35282567 -149006095 + AT_rich Low_complexity Low_complexity 1 23 0 675 330 88 4 chr4 35282947 35283220 -149005442 - LTR16A LTR ERVL 0 450 155 1325 211 176 24 chr4 35283609 35284059 -149004603 + MLT2B1 LTR ERVL 1 518 -2 8772 209 29 31 chr4 35284062 35285912 -149002750 + ERVL-B1-B1 LTR ERVL 2 1848 -3916 6990 120 3 7 chr4 35285912 35286921 -149001741 + THE1B-int LTR MaLR 576 1580 0 2193 131 19 25 chr4 35286921 35287287 -149001375 + THE1B LTR MaLR 1 364 0 2837 191 55 28 chr4 35287289 35287898 -149000764 - L1 LINE L1 -813 5333 4699 248 68 0 23 chr4 35287898 35287942 -149000720 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 2837 191 55 28 chr4 35287942 35288080 -149000582 - L1 LINE L1 -1447 4699 4566 521 209 9 0 chr4 35288084 35288199 -149000463 - L1 LINE L1 -1896 4250 4135 3793 200 20 0 chr4 35288221 35289011 -148999651 + L1PA15-16 LINE L1 1980 2785 -4064 12013 202 13 10 chr4 35289011 35291258 -148997404 + ERVL-B1-B1 LTR ERVL 2709 4962 -802 1061 191 0 0 chr4 35291300 35291478 -148997184 - ERVL LTR ERVL -607 5157 4980 * 2079 174 23 79 chr4 35291477 35292006 -148996656 + ERVL-B1-B1 LTR ERVL 5257 5755 -9 2039 206 48 48 chr4 35292008 35292528 -148996134 + MLT2B1 LTR ERVL 1 520 0 290 329 67 12 chr4 35293320 35293484 -148995178 + MLT1J2 LTR MaLR 64 236 -214 909 288 115 59 chr4 35293577 35294600 -148994062 - HAL1 LINE L1 -803 1704 624 197 279 66 118 chr4 35295195 35295331 -148993331 + L2 LINE L2 3144 3272 0 21 0 0 0 chr4 35295638 35295659 -148993003 + AT_rich Low_complexity Low_complexity 1 21 0 506 242 137 84 chr4 35295746 35295998 -148992664 + MIR SINE MIR 17 262 0 605 271 8 0 chr4 35296141 35296274 -148992388 - FLAM_A SINE Alu -8 134 1 318 264 112 8 chr4 35297583 35297708 -148990954 + MIR SINE MIR 96 233 -29 7843 95 4 3 chr4 35298589 35300502 -148988160 + L1PA7 LINE L1 4226 6154 0 362 311 42 8 chr4 35300722 35300841 -148987821 - MIR SINE MIR -120 142 20 26 30 0 0 chr4 35302061 35302094 -148986568 + AT_rich Low_complexity Low_complexity 1 33 0 1537 192 13 19 chr4 35302131 35302439 -148986223 - AluJo SINE Alu -2 310 5 1180 210 48 20 chr4 35303407 35303655 -148985007 + AluJb SINE Alu 39 293 -19 835 304 159 20 chr4 35303684 35303743 -148984919 - L1MEd LINE L1 -2833 3296 3247 2047 122 3 0 chr4 35303743 35304055 -148984607 - AluSq SINE Alu 0 313 1 835 304 159 20 chr4 35304055 35304761 -148983901 - L1MEd LINE L1 -2882 3247 2438 256 291 87 0 chr4 35305311 35305414 -148983248 - MIR SINE MIR -5 257 146 1705 193 0 7 chr4 35305836 35306136 -148982526 - AluJb SINE Alu -8 304 7 33 43 0 0 chr4 35306213 35306260 -148982402 + AT_rich Low_complexity Low_complexity 1 47 0 271 301 25 45 chr4 35306278 35306477 -148982185 - L1MEd LINE L1 -4881 1238 1044 34 55 0 0 chr4 35306517 35306572 -148982090 + AT_rich Low_complexity Low_complexity 1 55 0 4398 191 38 13 chr4 35306626 35307468 -148981194 - L1PB4 LINE L1 0 6156 5287 375 41 0 0 chr4 35307468 35307517 -148981145 + (TG)n Simple_repeat Simple_repeat 2 50 0 4398 191 38 13 chr4 35307517 35307796 -148980866 - L1PB4 LINE L1 -869 5287 5017 8465 175 43 6 chr4 35307849 35309436 -148979226 - MSTA-int LTR MaLR -4 1647 2 2219 196 16 7 chr4 35309437 35309861 -148978801 - MSTA LTR MaLR 0 428 1 538 308 87 26 chr4 35309885 35310275 -148978387 - L1MEd LINE L1 -5221 898 485 780 219 0 0 chr4 35310277 35310423 -148978239 + FRAM SINE Alu 1 146 -30 546 67 0 0 chr4 35310425 35310500 -148978162 + (CATA)n Simple_repeat Simple_repeat 2 76 0 419 350 37 37 chr4 35310621 35310944 -148977718 - L1MEd LINE L1 -5733 386 64 555 345 48 16 chr4 35310984 35311300 -148977362 + L2 LINE L2 1876 2201 -1113 250 370 82 19 chr4 35311316 35311633 -148977029 + L2 LINE L2 2687 3023 -249 207 311 67 59 chr4 35311706 35311841 -148976821 - L2 LINE L2 -20 3293 3158 203 403 0 0 chr4 35311944 35312016 -148976646 + L2 LINE L2 3188 3259 -13 719 103 0 0 chr4 35312020 35312127 -148976535 + L1MA4 LINE L1 6188 6294 -6 331 280 7 20 chr4 35314062 35314212 -148974450 + (TA)n Simple_repeat Simple_repeat 1 148 0 574 153 62 49 chr4 35314960 35315104 -148973558 - L1MC2 LINE L1 -9 6335 6190 486 141 12 0 chr4 35315121 35315206 -148973456 + MLT1E1 LTR MaLR 569 654 0 482 150 70 10 chr4 35315206 35315306 -148973356 + L1M LINE L1 5295 5400 -944 1782 162 5 50 chr4 35315368 35315744 -148972918 - L1MC2 LINE L1 -190 6154 5796 1927 240 30 91 chr4 35315747 35315763 -148972899 - L1MC2 LINE L1 -522 5822 5807 2157 129 0 0 chr4 35315763 35316073 -148972589 - AluY SINE Alu 0 311 2 1927 240 30 91 chr4 35316073 35316618 -148972044 - L1MC2 LINE L1 -537 5807 5295 1291 264 30 9 chr4 35316618 35316772 -148971890 - MLT1E1 LTR MaLR 0 654 505 1711 166 35 52 chr4 35316772 35317140 -148971522 + THE1B LTR MaLR 1 362 -2 1291 264 30 9 chr4 35317140 35317314 -148971348 - MLT1E1 LTR MaLR -149 505 319 615 263 134 0 chr4 35317332 35317511 -148971151 - MLT1E1 LTR MaLR -399 255 53 1334 190 28 28 chr4 35317710 35317994 -148970668 - LTR32 LTR ERVL -7 464 181 1548 174 48 60 chr4 35318215 35318612 -148970050 + MSTD LTR MaLR 3 394 -2 475 322 133 23 chr4 35318882 35319227 -148969435 + L2 LINE L2 2523 2905 -409 25 75 0 0 chr4 35320247 35320300 -148968362 + AT_rich Low_complexity Low_complexity 1 53 0 2025 212 119 0 chr4 35320313 35320751 -148967911 + MLT1D LTR MaLR 8 497 -8 2086 111 0 7 chr4 35320835 35321123 -148967539 + AluSx SINE Alu 1 286 -26 336 24 0 0 chr4 35321125 35321166 -148967496 + (CA)n Simple_repeat Simple_repeat 1 41 0 2110 99 0 3 chr4 35322214 35322520 -148966142 - AluSx SINE Alu 0 305 1 3608 151 140 8 chr4 35322816 35323546 -148965116 - LTR1B LTR ERV1 0 826 1 367 302 7 40 chr4 35323672 35323821 -148964841 - L1MC2 LINE L1 -1007 5139 4996 2033 128 0 39 chr4 35324310 35324622 -148964040 - AluSx SINE Alu -4 308 9 368 250 43 90 chr4 35324989 35325067 -148963595 - MLT1J LTR MaLR -332 179 99 2428 77 0 0 chr4 35325067 35325378 -148963284 - AluY SINE Alu 0 311 1 368 250 43 90 chr4 35325378 35325487 -148963175 - MLT1J LTR MaLR -412 99 1 21 0 0 0 chr4 35325499 35325520 -148963142 + AT_rich Low_complexity Low_complexity 1 21 0 249 348 106 29 chr4 35326152 35326359 -148962303 + LTR67 LTR ERVL 153 375 -182 247 293 0 0 chr4 35326473 35326531 -148962131 + MER94 DNA DNA 77 134 0 1133 229 8 22 chr4 35327174 35327441 -148961221 + AluJo SINE Alu 6 268 -44 2227 98 20 0 chr4 35328134 35328431 -148960231 - AluSp SINE Alu -10 303 1 190 341 49 67 chr4 35328795 35328959 -148959703 + L2 LINE L2 2810 2970 -344 1451 174 55 26 chr4 35329370 35329681 -148958981 - THE1C LTR MaLR 0 375 56 234 360 52 52 chr4 35331275 35331486 -148957176 + MIR SINE MIR 2 212 -50 584 200 30 122 chr4 35331933 35332228 -148956434 + L1M4 LINE L1 3863 4130 -2016 306 289 0 0 chr4 35332350 35332433 -148956229 + L1MEc LINE L1 1388 1470 -4926 1479 291 100 28 chr4 35332707 35334086 -148954576 + L1MEc LINE L1 2262 3779 -2436 2107 123 40 37 chr4 35334086 35334460 -148954202 - THE1C LTR MaLR 0 375 1 1479 291 100 28 chr4 35334460 35334723 -148953939 + L1MEc LINE L1 3779 4022 -2193 398 291 35 21 chr4 35334988 35335129 -148953533 + L2 LINE L2 2928 3070 -243 1911 128 3 3 chr4 35335576 35335908 -148952754 - AluSx SINE Alu 0 332 1 21 89 0 0 chr4 35335908 35335964 -148952698 + AT_rich Low_complexity Low_complexity 1 56 0 198 264 0 0 chr4 35336519 35336572 -148952090 - L2 LINE L2 0 3313 3261 568 266 36 99 chr4 35336660 35336780 -148951882 + L3 LINE CR1 976 1073 -504 1466 168 7 35 chr4 35336780 35337066 -148951596 - AluJb SINE Alu -33 279 2 568 266 36 99 chr4 35337066 35337197 -148951465 + L3 LINE CR1 1073 1211 -366 186 43 0 0 chr4 35337203 35337226 -148951436 + (TAAAAA)n Simple_repeat Simple_repeat 1 23 0 288 263 35 18 chr4 35337637 35337751 -148950911 + L1MEc LINE L1 2994 3109 -3106 14680 180 181 76 chr4 35337808 35342341 -148946321 + L1P LINE L1 6 5011 -1135 420 314 80 43 chr4 35342583 35343030 -148945632 + L1MEc LINE L1 3614 4077 -2138 256 329 19 17 chr4 35343069 35343247 -148945415 + L1MEc LINE L1 4150 4328 -1887 432 0 0 0 chr4 35343442 35343490 -148945172 + (TG)n Simple_repeat Simple_repeat 2 49 0 1616 205 57 32 chr4 35343506 35343910 -148944752 - LTR52 LTR ERVL -7 414 1 977 272 28 35 chr4 35343910 35344197 -148944465 - LTR52-int LTR ERVL 0 3556 3272 902 229 27 8 chr4 35344181 35344443 -148944219 - LTR52-int LTR ERVL -3255 301 3 * 1489 205 57 27 chr4 35344445 35344850 -148943812 - LTR52 LTR ERVL -3 418 2 472 65 26 0 chr4 35344850 35344927 -148943735 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 33 0 0 0 chr4 35345683 35345716 -148942946 + AT_rich Low_complexity Low_complexity 1 33 0 285 340 42 47 chr4 35346814 35347026 -148941636 + L2 LINE L2 1536 1746 -1568 535 176 37 7 chr4 35347113 35347249 -148941413 + L1MD3 LINE L1 7856 7995 0 355 355 57 32 chr4 35347252 35347531 -148941131 + MLT1I LTR MaLR 124 409 0 803 284 46 63 chr4 35348886 35349158 -148939504 + MLT1I LTR MaLR 66 332 -77 2420 59 0 3 chr4 35349158 35349464 -148939198 - AluY SINE Alu -6 305 1 803 284 46 63 chr4 35349464 35349539 -148939123 + MLT1I LTR MaLR 332 407 -2 753 384 103 21 chr4 35349579 35350684 -148937978 + L2 LINE L2 1782 2977 -337 26 0 0 0 chr4 35351891 35351917 -148936745 + AT_rich Low_complexity Low_complexity 1 26 0 237 196 43 0 chr4 35352928 35352974 -148935688 - MER2 DNA MER2_type 0 345 298 213 39 0 0 chr4 35353015 35353041 -148935621 + (GA)n Simple_repeat Simple_repeat 2 27 0 206 213 43 0 chr4 35353045 35353092 -148935570 + GA-rich Low_complexity Low_complexity 4 52 0 1200 225 33 4 chr4 35353094 35353370 -148935292 - MLT2D LTR ERVL -48 366 83 280 302 94 20 chr4 35353397 35353546 -148935116 + L3 LINE CR1 1139 1298 -279 * 367 300 54 23 chr4 35353538 35353668 -148934994 - L2 LINE L2 0 3313 3180 255 61 0 0 chr4 35353926 35353959 -148934703 + (TCCA)n Simple_repeat Simple_repeat 3 35 0 884 285 105 67 chr4 35354628 35355476 -148933186 - L1ME3A LINE L1 -8 6162 5283 1846 302 102 13 chr4 35355803 35357192 -148931470 - L1ME3A LINE L1 -2499 3647 2135 254 286 87 16 chr4 35357691 35357817 -148930845 - L1M2 LINE L1 -4330 2519 2385 21 0 0 0 chr4 35357845 35357866 -148930796 + AT_rich Low_complexity Low_complexity 1 21 0 414 290 97 0 chr4 35358025 35358170 -148930492 - MIR SINE MIR -27 235 77 284 311 80 33 chr4 35358334 35358485 -148930177 + MIR3 SINE MIR 40 197 -11 219 387 11 0 chr4 35358634 35358727 -148929935 - L3 LINE CR1 -410 1167 1074 26 50 0 0 chr4 35359070 35359110 -148929552 + AT_rich Low_complexity Low_complexity 1 40 0 28 0 0 0 chr4 35359581 35359609 -148929053 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr4 35360350 35360376 -148928286 + AT_rich Low_complexity Low_complexity 1 26 0 1670 184 7 3 chr4 35360384 35360677 -148927985 - AluSx SINE Alu -18 294 1 25 51 0 0 chr4 35360984 35361023 -148927639 + AT_rich Low_complexity Low_complexity 1 39 0 1617 292 13 18 chr4 35361112 35361667 -148926995 + L1M3c LINE L1 1 596 -5545 1423 226 117 52 chr4 35361694 35362137 -148926525 + L1M3c LINE L1 669 1140 -5001 379 297 94 67 chr4 35362336 35363032 -148925630 + L1ME LINE L1 3878 4594 -1552 509 267 0 0 chr4 35363310 35363441 -148925221 - L1PB4 LINE L1 -2 6154 6024 373 281 40 85 chr4 35363505 35363861 -148924801 + MLT1J1 LTR MaLR 68 425 -4 290 47 47 0 chr4 35364162 35364205 -148924457 + (CAAAA)n Simple_repeat Simple_repeat 3 47 0 21 0 0 0 chr4 35365880 35365901 -148922761 + AT_rich Low_complexity Low_complexity 1 21 0 434 336 9 0 chr4 35366487 35366597 -148922065 + MER81 DNA DNA 2 112 -2 261 315 7 56 chr4 35366846 35366989 -148921673 + MIR SINE MIR 66 201 -61 386 310 90 33 chr4 35367876 35368121 -148920541 + MLT1L LTR MaLR 306 564 -51 273 260 27 27 chr4 35368219 35368292 -148920370 - L2 LINE L2 -560 2754 2682 276 321 94 47 chr4 35368858 35369070 -148919592 + MIR SINE MIR 24 245 -17 24 32 0 0 chr4 35370908 35370939 -148917723 + AT_rich Low_complexity Low_complexity 1 31 0 410 336 136 8 chr4 35372362 35372627 -148916035 + L2 LINE L2 2397 2695 -619 976 273 70 47 chr4 35372837 35373369 -148915293 + L1ME LINE L1 5240 5804 -366 892 208 12 0 chr4 35373371 35373539 -148915123 - Tigger5 DNA MER2_type 0 2323 2154 193 347 41 10 chr4 35373707 35373805 -148914857 + L2 LINE L2 2954 3054 -259 320 335 62 39 chr4 35373884 35374063 -148914599 + L2 LINE L2 2790 2972 -342 270 253 40 0 chr4 35374149 35374248 -148914414 + (TA)n Simple_repeat Simple_repeat 2 104 0 291 284 106 79 chr4 35375688 35375942 -148912720 - L2 LINE L2 -20 3293 3033 661 230 158 49 chr4 35376639 35376680 -148911982 - MLT2C2 LTR ERVL 0 464 429 680 10 41 0 chr4 35376680 35376777 -148911885 + (TCTA)n Simple_repeat Simple_repeat 2 102 0 661 230 158 49 chr4 35376777 35377039 -148911623 - MLT2C2 LTR ERVL -35 429 128 28 29 0 0 chr4 35377261 35377296 -148911366 + AT_rich Low_complexity Low_complexity 1 35 0 2545 124 3 3 chr4 35377413 35377777 -148910885 + THE1B LTR MaLR 1 364 0 31 0 0 0 chr4 35379548 35379579 -148909083 + AT_rich Low_complexity Low_complexity 1 31 0 310 274 72 67 chr4 35379964 35380187 -148908475 + L1MC4 LINE L1 7684 7907 -135 432 261 118 19 chr4 35382109 35382270 -148906392 - MER5B DNA MER1_type 0 178 2 787 226 100 30 chr4 35385149 35385419 -148903243 - MLT1C LTR MaLR -2 465 177 458 260 98 59 chr4 35385619 35385823 -148902839 - MLT1I LTR MaLR -197 212 1 234 0 0 0 chr4 35386561 35386587 -148902075 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2456 191 29 22 chr4 35386950 35387496 -148901166 - MER89 LTR ERV1 0 559 10 232 426 34 7 chr4 35387737 35387885 -148900777 + MIR SINE MIR 29 180 -82 5113 155 37 27 chr4 35388257 35388380 -148900282 - L1MA7 LINE L1 -4 6287 6167 354 23 0 0 chr4 35388380 35388423 -148900239 + (TG)n Simple_repeat Simple_repeat 2 44 0 5113 155 37 27 chr4 35388423 35389406 -148899256 - L1MA7 LINE L1 -124 6167 5171 369 313 9 27 chr4 35390163 35390275 -148898387 - L2 LINE L2 0 3272 3163 21 36 0 0 chr4 35391463 35391491 -148897171 + AT_rich Low_complexity Low_complexity 1 28 0 8918 184 13 28 chr4 35391511 35392063 -148896599 - L1MA6 LINE L1 -2 6289 5730 2163 132 41 16 chr4 35392063 35392427 -148896235 - THE1C LTR MaLR 0 375 3 9278 133 34 21 chr4 35392429 35393989 -148894673 - THE1C-int LTR MaLR 0 1580 1 2468 110 5 21 chr4 35393989 35394370 -148894292 - THE1C LTR MaLR 0 375 1 8918 184 13 28 chr4 35394370 35396647 -148892015 - L1MA6 LINE L1 -560 5731 3512 374 0 22 0 chr4 35396913 35396959 -148891703 + (CA)n Simple_repeat Simple_repeat 2 48 0 21 0 0 0 chr4 35398406 35398427 -148890235 + AT_rich Low_complexity Low_complexity 1 21 0 446 334 121 57 chr4 35398472 35399766 -148888896 + L2 LINE L2 1894 3266 -6 2317 124 63 0 chr4 35399840 35400219 -148888443 - MER57A LTR ERV1 0 403 1 1760 95 4 0 chr4 35400801 35401033 -148887629 + AluSg SINE Alu 1 233 -77 1306 201 103 34 chr4 35401078 35401515 -148887147 - MLT1C LTR MaLR 0 467 1 2031 288 122 55 chr4 35401734 35403219 -148885443 + L2 LINE L2 1721 3313 0 36 23 0 0 chr4 35404822 35404865 -148883797 + AT_rich Low_complexity Low_complexity 1 43 0 1638 165 76 9 chr4 35405729 35406045 -148882617 - MER1B DNA MER1_type 0 337 1 2573 101 3 6 chr4 35407018 35407374 -148881288 - THE1A LTR MaLR 0 355 1 11072 103 9 4 chr4 35407374 35408946 -148879716 - THE1A-int LTR MaLR 0 1580 1 2044 102 0 1 chr4 35408946 35409258 -148879404 - THE1A LTR MaLR 0 355 1 764 213 76 152 chr4 35409899 35410294 -148878368 + MLT1A1 LTR MaLR 1 365 0 502 335 76 56 chr4 35410509 35411308 -148877354 + L1M4 LINE L1 4520 5334 -812 24 53 0 0 chr4 35411370 35411408 -148877254 + AT_rich Low_complexity Low_complexity 1 38 0 27 29 0 0 chr4 35411435 35411469 -148877193 + AT_rich Low_complexity Low_complexity 1 34 0 213 397 77 0 chr4 35412243 35412321 -148876341 - MIR SINE MIR -96 112 29 1303 204 15 88 chr4 35412332 35412675 -148875987 - MLT1A1 LTR MaLR 0 365 48 184 143 0 32 chr4 35413732 35413795 -148874867 + (TATAA)n Simple_repeat Simple_repeat 4 64 0 254 265 97 105 chr4 35413803 35414041 -148874621 - MIR SINE MIR -14 248 13 279 0 0 0 chr4 35414105 35414136 -148874526 + (A)n Simple_repeat Simple_repeat 1 31 0 322 321 138 62 chr4 35414712 35415017 -148873645 - L1ME LINE L1 -5484 586 259 267 322 7 20 chr4 35415195 35415347 -148873315 - L1MEc LINE L1 -5025 1371 1222 1130 202 7 2 chr4 35415470 35415741 -148872921 + MER7A DNA MER2_type 3 333 -3 291 28 0 0 chr4 35415788 35415824 -148872838 + (TTG)n Simple_repeat Simple_repeat 1 36 0 261 271 0 21 chr4 35416228 35416324 -148872338 + (CATA)n Simple_repeat Simple_repeat 3 96 0 207 0 0 0 chr4 35417000 35417023 -148871639 + (A)n Simple_repeat Simple_repeat 1 23 0 679 325 65 47 chr4 35418256 35418597 -148870065 - L2 LINE L2 -1 3312 2966 1980 102 0 0 chr4 35419654 35419929 -148868733 + AluSc SINE Alu 3 277 -32 182 62 31 0 chr4 35419929 35419961 -148868701 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 29 60 0 0 chr4 35420138 35420188 -148868474 + AT_rich Low_complexity Low_complexity 1 50 0 590 304 72 5 chr4 35420918 35421125 -148867537 - MIR SINE MIR -13 249 29 28 0 0 0 chr4 35421134 35421162 -148867500 + AT_rich Low_complexity Low_complexity 1 28 0 212 333 85 35 chr4 35421948 35422089 -148866573 - MIR SINE MIR -112 150 3 418 284 52 32 chr4 35422304 35422459 -148866203 + L1MEc LINE L1 20 177 -6219 548 242 0 0 chr4 35422468 35422596 -148866066 - MLT1D LTR MaLR 0 505 378 311 281 74 15 chr4 35422672 35422807 -148865855 + L1MEc LINE L1 1948 2090 -4306 4768 104 20 6 chr4 35422853 35423567 -148865095 - L1PA13 LINE L1 0 6163 5440 265 143 20 0 chr4 35423567 35423616 -148865046 - L1PA13 LINE L1 -1935 4211 4162 1835 257 65 7 chr4 35423616 35424312 -148864350 + L1M4 LINE L1 4374 5109 -1037 313 133 0 0 chr4 35424607 35424652 -148864010 + MLT1I LTR MaLR 362 406 -3 326 234 45 63 chr4 35424720 35424831 -148863831 + L1ME3A LINE L1 6038 6146 -24 270 264 45 0 chr4 35424841 35424951 -148863711 + (TA)n Simple_repeat Simple_repeat 1 115 0 1307 144 66 16 chr4 35426167 35426410 -148862252 - MSTA LTR MaLR 0 428 174 2043 123 3 3 chr4 35426510 35426819 -148861843 + MSTA-int LTR MaLR 1338 1646 -5 1743 158 110 18 chr4 35426824 35427216 -148861446 + MSTA LTR MaLR 1 428 0 2181 114 0 0 chr4 35427309 35427615 -148861047 + AluSg SINE Alu 1 306 -4 406 335 71 0 chr4 35428052 35428222 -148860440 - MER5A DNA MER1_type 0 189 8 214 302 85 28 chr4 35428582 35428688 -148859974 + MIR SINE MIR 2 113 -149 2331 132 0 6 chr4 35429200 35429564 -148859098 + THE1B LTR MaLR 1 362 -2 272 277 85 0 chr4 35430549 35430643 -148858019 - MIR SINE MIR -112 150 49 200 217 22 0 chr4 35430641 35430687 -148857975 - L2 LINE L2 -3 3310 3264 * 24 32 0 0 chr4 35431410 35431441 -148857221 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr4 35432073 35432096 -148856566 + AT_rich Low_complexity Low_complexity 1 23 0 201 288 153 27 chr4 35432103 35432214 -148856448 - L2 LINE L2 0 3313 3189 688 176 21 21 chr4 35432277 35432419 -148856243 + MSTD LTR MaLR 253 394 -2 241 331 66 22 chr4 35432420 35432556 -148856106 - L2 LINE L2 -221 3051 2910 182 275 0 75 chr4 35432696 35432776 -148855886 + MIR SINE MIR 189 262 0 405 0 0 0 chr4 35433719 35433764 -148854898 + (TA)n Simple_repeat Simple_repeat 1 45 0 23 33 0 0 chr4 35433882 35433912 -148854750 + AT_rich Low_complexity Low_complexity 1 30 0 313 329 181 0 chr4 35433927 35434076 -148854586 - MIR SINE MIR -13 249 74 1681 195 3 0 chr4 35434493 35434790 -148853872 + AluJb SINE Alu 1 298 -14 234 0 0 0 chr4 35434790 35434816 -148853846 + (TA)n Simple_repeat Simple_repeat 2 27 0 670 234 43 22 chr4 35435089 35435273 -148853389 - MER5A DNA MER1_type -1 188 1 21 0 0 0 chr4 35436523 35436544 -148852118 + AT_rich Low_complexity Low_complexity 1 21 0 447 324 89 0 chr4 35438279 35438458 -148850204 + MLT1E LTR MaLR 6 200 -342 1021 275 47 55 chr4 35438522 35438926 -148849736 + MLT1E LTR MaLR 193 593 0 2117 123 46 0 chr4 35438932 35439256 -148849406 + L1P3 LINE L1 8 346 -6115 6780 66 11 0 chr4 35439386 35440931 -148847731 - L1PA7 LINE L1 -1 6153 4597 194 310 0 17 chr4 35443570 35443628 -148845034 - MER5A DNA MER1_type -13 176 120 183 300 191 18 chr4 35443580 35443690 -148844972 + MER5A DNA MER1_type 35 163 -26 * 183 184 0 0 chr4 35444853 35444891 -148843771 + (ATG)n Simple_repeat Simple_repeat 1 38 0 588 273 21 62 chr4 35445368 35445562 -148843100 + MIR SINE MIR 42 227 -35 249 324 0 0 chr4 35445972 35446040 -148842622 - L2 LINE L2 -4 3309 3242 2038 141 3 0 chr4 35446586 35446891 -148841771 + AluSx SINE Alu 1 306 -6 628 198 16 0 chr4 35447394 35447520 -148841142 - Charlie1a DNA MER1_type -5 1450 1323 2852 196 21 7 chr4 35447520 35448137 -148840525 + L1PB4 LINE L1 4681 5306 -840 2082 193 237 97 chr4 35448155 35449021 -148839641 + LTR28 LTR ERV1 30 1016 -4 382 205 0 0 chr4 35449024 35449107 -148839555 + L1PB4 LINE L1 5302 5384 -762 1927 156 59 8 chr4 35449151 35449509 -148839153 + L1PB4 LINE L1 5776 6151 -5 82 62 0 0 chr4 35449513 35449658 -148839004 + AT_rich Low_complexity Low_complexity 1 145 0 2108 115 10 0 chr4 35450727 35451023 -148837639 + AluSg SINE Alu 1 299 -11 1555 227 5 52 chr4 35451282 35451332 -148837330 - MLT1A1 LTR MaLR 0 365 314 1983 155 0 0 chr4 35451332 35451636 -148837026 - AluSx SINE Alu -7 305 2 1555 227 5 52 chr4 35451636 35451968 -148836694 - MLT1A1 LTR MaLR -51 314 1 4102 222 57 30 chr4 35451994 35452432 -148836230 - Charlie1a DNA MER1_type -1580 1181 756 2256 114 0 0 chr4 35452432 35452740 -148835922 + AluSq SINE Alu 3 310 -3 4102 222 57 30 chr4 35452740 35453450 -148835212 - Charlie1a DNA MER1_type -2005 756 3 1992 119 37 0 chr4 35453798 35454092 -148834570 + AluSx SINE Alu 1 305 -7 1237 300 58 39 chr4 35454528 35455147 -148833515 - L2 LINE L2 -5 3308 2684 335 336 60 0 chr4 35455427 35455543 -148833119 - MIR SINE MIR -6 256 134 220 353 47 24 chr4 35455952 35456037 -148832625 + MIR SINE MIR 17 103 -105 22 0 0 0 chr4 35456518 35456540 -148832122 + AT_rich Low_complexity Low_complexity 1 22 0 432 233 74 95 chr4 35456632 35456821 -148831841 - MIR SINE MIR -6 256 72 2220 228 30 4 chr4 35457867 35458331 -148830331 + MER70B LTR ERVL 1 476 -102 22 35 0 0 chr4 35458977 35459006 -148829656 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 35459057 35459078 -148829584 + AT_rich Low_complexity Low_complexity 1 21 0 2020 112 53 0 chr4 35460861 35461146 -148827516 - AluSp SINE Alu -13 300 1 271 315 39 47 chr4 35461246 35461373 -148827289 - L2 LINE L2 -18 3295 3170 313 146 0 0 chr4 35461643 35461691 -148826971 + MLT1C LTR MaLR 417 464 -3 238 364 186 0 chr4 35461940 35462080 -148826582 + L2 LINE L2 3107 3272 0 212 204 23 0 chr4 35462326 35462370 -148826292 + CT-rich Low_complexity Low_complexity 3 47 0 251 377 18 0 chr4 35462373 35462487 -148826175 - L2 LINE L2 -18 3254 3139 27 0 0 0 chr4 35462672 35462699 -148825963 + AT_rich Low_complexity Low_complexity 1 27 0 27 0 0 0 chr4 35462812 35462839 -148825823 + AT_rich Low_complexity Low_complexity 1 27 0 3001 81 0 0 chr4 35462854 35463292 -148825370 + L1PA4 LINE L1 5729 6166 0 2659 93 3 6 chr4 35463626 35463991 -148824671 + THE1B LTR MaLR 1 364 0 30 89 0 0 chr4 35464141 35464220 -148824442 + AT_rich Low_complexity Low_complexity 1 79 0 714 298 57 4 chr4 35464230 35464475 -148824187 - L1MA9 LINE L1 -37 6275 6018 1136 288 121 41 chr4 35464773 35465451 -148823211 + L2 LINE L2 1981 2712 -602 376 220 165 9 chr4 35465455 35465564 -148823098 - MIR SINE MIR -51 211 86 208 302 46 83 chr4 35465618 35465871 -148822791 + L2 LINE L2 2722 3031 -282 21 0 0 0 chr4 35467892 35467913 -148820749 + AT_rich Low_complexity Low_complexity 1 21 0 30 27 0 0 chr4 35468689 35468726 -148819936 + AT_rich Low_complexity Low_complexity 1 37 0 238 235 0 0 chr4 35468808 35468859 -148819803 - L2 LINE L2 0 3313 3263 631 316 44 5 chr4 35469014 35469220 -148819442 + MIR SINE MIR 49 262 0 281 349 80 17 chr4 35470057 35470232 -148818430 - MIR SINE MIR -2 260 75 626 267 39 17 chr4 35471791 35471971 -148816691 - MLT1C LTR MaLR -84 383 200 204 40 0 0 chr4 35471995 35472020 -148816642 + (TTG)n Simple_repeat Simple_repeat 3 27 0 2256 76 7 0 chr4 35472705 35472982 -148815680 - AluY SINE Alu -18 293 15 1301 153 27 0 chr4 35472990 35473212 -148815450 - L1MA4A LINE L1 -27 6276 6049 386 98 98 0 chr4 35473225 35473286 -148815376 - MLT1C LTR MaLR -292 175 109 2151 303 149 10 chr4 35473296 35474363 -148814299 - L2 LINE L2 -313 3000 1789 21 36 0 0 chr4 35475490 35475518 -148813144 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr4 35477395 35477419 -148811243 + AT_rich Low_complexity Low_complexity 1 24 0 267 263 25 25 chr4 35477582 35477700 -148810962 + L1ME4a LINE L1 5768 5885 -236 235 206 55 14 chr4 35477736 35477809 -148810853 + (TATATG)n Simple_repeat Simple_repeat 2 77 0 4679 116 17 54 chr4 35477872 35478176 -148810486 + MER4E LTR ERV1 1 315 -464 2241 111 0 13 chr4 35478176 35478491 -148810171 + AluSx SINE Alu 1 311 -1 4679 116 17 54 chr4 35478491 35478995 -148809667 + MER4E LTR ERV1 315 779 0 2330 145 81 34 chr4 35479150 35479618 -148809044 - LTR2B LTR ERV1 0 490 1 337 269 79 71 chr4 35479831 35480174 -148808488 - MLT1I LTR MaLR -2 407 70 240 351 58 32 chr4 35480480 35480634 -148808028 - MIR SINE MIR -56 206 49 313 224 22 37 chr4 35481173 35481307 -148807355 + L1ME4a LINE L1 5990 6121 0 234 262 16 16 chr4 35481981 35482042 -148806620 - MER58 DNA MER1_type -129 86 26 742 300 57 24 chr4 35482060 35482307 -148806355 - MIR SINE MIR -5 257 3 1597 255 50 2 chr4 35482386 35482790 -148805872 - MLT1E2 LTR MaLR -4 622 200 2291 165 34 77 chr4 35482800 35483278 -148805384 + LTR32 LTR ERVL 15 471 0 534 142 172 58 chr4 35483308 35483482 -148805180 - MLT1E3 LTR MaLR -442 184 5 290 289 195 13 chr4 35484147 35484296 -148804366 + L2 LINE L2 2916 3091 -181 1103 276 76 11 chr4 35484432 35484802 -148803860 - MLT1I LTR MaLR -8 401 8 474 202 0 0 chr4 35484833 35484922 -148803740 + MLT1A1 LTR MaLR 1 89 -285 600 236 6 45 chr4 35485141 35485298 -148803364 + MLT1B LTR MaLR 1 151 -239 1164 341 57 24 chr4 35485312 35486335 -148802327 - L1MEc LINE L1 -5306 1090 35 39 22 0 0 chr4 35486627 35486673 -148801989 + AT_rich Low_complexity Low_complexity 1 46 0 5476 171 43 13 chr4 35487175 35488362 -148800300 + L1MC1 LINE L1 5107 6333 0 300 115 0 66 chr4 35488353 35488414 -148800248 + L1MB2 LINE L1 6111 6167 -4 * 32 0 0 0 chr4 35488414 35488446 -148800216 + AT_rich Low_complexity Low_complexity 1 32 0 180 77 0 0 chr4 35488661 35488687 -148799975 + (T)n Simple_repeat Simple_repeat 1 26 0 195 217 0 0 chr4 35489141 35489201 -148799461 + (TG)n Simple_repeat Simple_repeat 2 61 0 1179 196 43 40 chr4 35490065 35490340 -148798322 + MLT1A1 LTR MaLR 56 331 -34 717 245 6 12 chr4 35490340 35490503 -148798159 + MER70A LTR ERVL 1 162 -310 * 2115 219 39 49 chr4 35490499 35490993 -148797669 + MER70B LTR ERVL 90 578 0 235 158 0 0 chr4 35490995 35491033 -148797629 + MLT1A1 LTR MaLR 336 373 -1 797 181 24 0 chr4 35491034 35491161 -148797501 - MER20 DNA MER1_type -88 131 2 1125 286 28 55 chr4 35491542 35491654 -148797008 - LTR16C LTR ERVL -4 487 373 2089 135 48 25 chr4 35491654 35492010 -148796652 + THE1B LTR MaLR 1 364 0 10332 176 1 0 chr4 35492010 35493588 -148795074 + THE1B-int LTR MaLR 1 1580 0 2029 136 57 28 chr4 35493588 35493942 -148794720 + THE1B LTR MaLR 1 364 0 1125 286 28 55 chr4 35493942 35494226 -148794436 - LTR16C LTR ERVL -115 376 100 439 260 182 17 chr4 35494593 35494774 -148793888 - MIR SINE MIR -50 212 2 25 0 0 0 chr4 35495055 35495080 -148793582 + AT_rich Low_complexity Low_complexity 1 25 0 307 349 98 23 chr4 35496063 35496278 -148792384 - MIR SINE MIR -4 258 28 623 186 47 16 chr4 35496841 35496970 -148791692 + FLAM_C SINE Alu 1 133 0 4467 105 76 26 chr4 35497009 35498023 -148790639 - MER11A LTR ERVK -1 1265 1 1992 172 90 10 chr4 35498023 35498413 -148790249 + MSTA LTR MaLR 8 428 0 233 121 0 0 chr4 35498413 35498446 -148790216 + Alu SINE Alu 29 61 -114 493 193 174 0 chr4 35498450 35498559 -148790103 + AluJb SINE Alu 176 303 -9 2179 114 7 0 chr4 35498804 35499102 -148789560 + AluSx SINE Alu 1 300 -12 2793 165 72 42 chr4 35499216 35499810 -148788852 - LTR9 LTR ERV1 0 612 1 311 332 79 55 chr4 35499972 35500427 -148788235 + LTR67 LTR ERVL 91 556 -1 399 305 10 90 chr4 35500558 35500758 -148787904 - MIR3 SINE MIR -6 202 19 224 312 127 40 chr4 35501233 35501406 -148787256 + MIR SINE MIR 65 252 -10 199 371 98 21 chr4 35502148 35502291 -148786371 - L3b LINE CR1 -93 1490 1337 766 218 59 0 chr4 35502597 35502767 -148785895 - MER3 DNA MER1_type 0 209 30 3617 228 36 70 chr4 35503905 35504383 -148784279 - L1MB8 LINE L1 -51 6127 5634 2029 96 29 0 chr4 35504383 35504676 -148783986 - AluSg SINE Alu 0 301 1 3617 228 36 70 chr4 35504676 35505141 -148783521 - L1MB8 LINE L1 -544 5634 5155 1729 155 49 3 chr4 35505141 35505425 -148783237 + AluJo SINE Alu 16 312 0 3617 228 36 70 chr4 35505425 35506296 -148782366 - L1MB8 LINE L1 -1023 5155 4441 1882 125 24 10 chr4 35506296 35506591 -148782071 - AluSx SINE Alu -13 299 1 3617 228 36 70 chr4 35506591 35507148 -148781514 - L1MB8 LINE L1 -1737 4441 3867 186 43 0 0 chr4 35507249 35507272 -148781390 + (TCC)n Simple_repeat Simple_repeat 1 23 0 2702 257 98 7 chr4 35507272 35508403 -148780259 - L1MB8 LINE L1 -2529 3617 2384 182 254 0 18 chr4 35508495 35508550 -148780112 - MIR SINE MIR -150 112 59 2114 108 9 19 chr4 35508578 35508894 -148779768 + AluSq SINE Alu 1 313 0 2244 115 0 10 chr4 35509881 35510193 -148778469 + AluSq SINE Alu 1 309 -4 360 295 217 28 chr4 35510195 35510554 -148778108 + L1MC4a LINE L1 5574 6000 -1808 617 126 34 17 chr4 35511266 35511385 -148777277 + FLAM_C SINE Alu 23 143 0 887 214 50 11 chr4 35511587 35511769 -148776893 - MSTA LTR MaLR -9 419 231 288 310 18 35 chr4 35512138 35512274 -148776388 + FLAM_C SINE Alu 23 156 0 2473 155 29 7 chr4 35512450 35512869 -148775793 - MSTA LTR MaLR 0 428 1 368 288 146 26 chr4 35514042 35514275 -148774387 - MIR SINE MIR -1 261 1 1303 248 52 83 chr4 35514315 35514421 -148774241 - MLT1F1 LTR MaLR 0 567 459 1971 155 47 6 chr4 35514421 35514743 -148773919 - MER1B DNA MER1_type -2 335 1 1303 248 52 83 chr4 35514743 35515152 -148773510 - MLT1F1 LTR MaLR -108 459 68 199 292 12 119 chr4 35515565 35515733 -148772929 - MIR SINE MIR -7 255 106 636 256 14 70 chr4 35516608 35516823 -148771839 + MLT2B1 LTR ERVL 276 478 -42 253 159 14 14 chr4 35516831 35516900 -148771762 + (TA)n Simple_repeat Simple_repeat 1 69 0 247 104 0 51 chr4 35516904 35516970 -148771692 + MLT2C2 LTR ERVL 431 464 0 507 296 13 7 chr4 35516977 35517129 -148771533 - MLT1I LTR MaLR -206 203 51 234 282 13 26 chr4 35517371 35517449 -148771213 + MIR SINE MIR 183 259 -3 223 177 16 32 chr4 35517458 35517520 -148771142 + (TTA)n Simple_repeat Simple_repeat 1 61 0 436 239 54 83 chr4 35518092 35518297 -148770365 + MIR SINE MIR 48 246 -16 1422 267 85 30 chr4 35518368 35518862 -148769800 - MLT1H1 LTR MaLR 0 555 35 711 219 77 5 chr4 35519290 35519486 -148769176 - MER58C DNA MER1_type -5 210 1 493 224 61 139 chr4 35520227 35520467 -148768195 - MER69 DNA AcHobo -1399 1127 913 1781 152 82 114 chr4 35520467 35520907 -148767755 + MSTB LTR MaLR 1 426 0 493 224 61 139 chr4 35520907 35520961 -148767701 - MER69 DNA AcHobo -1613 913 856 8762 173 28 32 chr4 35520961 35523395 -148765267 - L1M1 LINE L1 -548 5755 3308 5464 206 19 68 chr4 35523404 35523935 -148764727 - L1M2 LINE L1 -3929 3279 2723 1934 163 0 7 chr4 35523935 35524230 -148764432 + AluSx SINE Alu 3 295 -17 5464 206 19 68 chr4 35524230 35525417 -148763245 - L1M2 LINE L1 -4485 2723 1652 2358 249 66 30 chr4 35525401 35526163 -148762499 - L1M2 LINE L1 -6322 887 29 * 312 260 81 52 chr4 35526187 35526358 -148762304 - MER69 DNA AcHobo -1737 789 614 279 266 116 22 chr4 35526358 35526613 -148762049 - MER34 LTR ERV1 0 726 354 310 221 48 39 chr4 35526780 35526884 -148761778 - MER34 LTR ERV1 -412 130 26 1626 262 69 19 chr4 35526912 35527477 -148761185 - MER69 DNA AcHobo -1927 599 7 32 0 0 0 chr4 35527677 35527709 -148760953 + AT_rich Low_complexity Low_complexity 1 32 0 1903 125 38 14 chr4 35527711 35527998 -148760664 + AluSc SINE Alu 1 294 -15 311 192 61 40 chr4 35528892 35528991 -148759671 - MLT1I LTR MaLR -305 104 4 342 0 0 0 chr4 35531184 35531222 -148757440 + (CAG)n Simple_repeat Simple_repeat 2 39 0 279 206 38 8 chr4 35534297 35534428 -148754234 + GA-rich Low_complexity Low_complexity 1 135 0 331 259 0 35 chr4 35536056 35536226 -148752436 + (CGG)n Simple_repeat Simple_repeat 1 164 0 22 0 0 0 chr4 35541025 35541047 -148747615 + AT_rich Low_complexity Low_complexity 1 22 0 243 88 0 0 chr4 35542340 35542374 -148746288 + (TA)n Simple_repeat Simple_repeat 1 34 0 234 0 0 0 chr4 35542373 35542399 -148746263 + (GA)n Simple_repeat Simple_repeat 2 27 0 * 346 335 12 12 chr4 35543147 35543280 -148745382 - MIR SINE MIR -56 152 19 29 47 0 0 chr4 35544000 35544043 -148744619 + AT_rich Low_complexity Low_complexity 1 43 0 28 61 0 0 chr4 35544175 35544224 -148744438 + AT_rich Low_complexity Low_complexity 1 49 0 222 156 0 0 chr4 35545394 35545439 -148743223 + (TG)n Simple_repeat Simple_repeat 2 46 0 24 0 0 0 chr4 35545506 35545530 -148743132 + AT_rich Low_complexity Low_complexity 1 24 0 21 82 0 0 chr4 35545580 35545629 -148743033 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr4 35546107 35546128 -148742534 + AT_rich Low_complexity Low_complexity 1 21 0 609 236 65 41 chr4 35546565 35546811 -148741851 - MER112 DNA MER1_type -1 255 4 628 205 8 8 chr4 35547533 35547660 -148741002 - FLAM_A SINE Alu -8 134 8 2073 141 0 3 chr4 35548304 35548610 -148740052 - AluSx SINE Alu -7 305 1 395 216 10 49 chr4 35548746 35548848 -148739814 + L2 LINE L2 3174 3271 -1 26 0 0 0 chr4 35550576 35550602 -148738060 + AT_rich Low_complexity Low_complexity 1 26 0 2333 74 0 3 chr4 35550602 35550912 -148737750 - AluY SINE Alu -2 309 1 325 229 29 48 chr4 35551151 35551256 -148737406 + MIR SINE MIR 35 137 -71 22 0 0 0 chr4 35551425 35551447 -148737215 + AT_rich Low_complexity Low_complexity 1 22 0 795 201 20 0 chr4 35551448 35551597 -148737065 + FRAM SINE Alu 1 152 -14 186 43 0 0 chr4 35551613 35551636 -148737026 + (TG)n Simple_repeat Simple_repeat 2 24 0 1080 237 15 57 chr4 35551931 35552264 -148736398 - MLT1B LTR MaLR -6 384 66 21 0 0 0 chr4 35553133 35553154 -148735508 + AT_rich Low_complexity Low_complexity 1 21 0 306 65 48 0 chr4 35553188 35553250 -148735412 + (TA)n Simple_repeat Simple_repeat 1 65 0 226 303 15 0 chr4 35553742 35553808 -148734854 + (TATG)n Simple_repeat Simple_repeat 1 67 0 320 326 11 11 chr4 35553872 35553967 -148734695 - L2 LINE L2 -30 3283 3189 629 338 18 9 chr4 35554034 35554262 -148734400 - MIR SINE MIR -28 234 5 906 207 47 61 chr4 35555357 35555570 -148733092 - AluJb SINE Alu -102 210 1 201 74 0 0 chr4 35557797 35557824 -148730838 + (CA)n Simple_repeat Simple_repeat 1 27 0 274 294 25 84 chr4 35558591 35558710 -148729952 - L2 LINE L2 -107 3165 3054 508 289 55 68 chr4 35558930 35559328 -148729334 + MARNA DNA Mariner 185 577 -9 228 67 0 0 chr4 35559845 35559875 -148728787 + (TG)n Simple_repeat Simple_repeat 1 30 0 2092 104 39 0 chr4 35559926 35560205 -148728457 - AluSx SINE Alu -22 290 1 1790 212 46 38 chr4 35561391 35561890 -148726772 - MLT1D LTR MaLR -2 503 1 1354 235 57 29 chr4 35562388 35562771 -148725891 - MSTD LTR MaLR -2 394 1 456 230 0 0 chr4 35564102 35564202 -148724460 + MER20 DNA MER1_type 103 202 -17 341 233 26 60 chr4 35564388 35564504 -148724158 - LTR33 LTR ERVL -377 144 33 293 364 73 26 chr4 35564763 35564914 -148723748 - L2 LINE L2 0 3272 3115 1632 86 4 26 chr4 35566195 35566429 -148722233 - AluSg/x SINE Alu -1 309 81 318 106 0 0 chr4 35566863 35566910 -148721752 + (A)n Simple_repeat Simple_repeat 1 47 0 288 0 0 0 chr4 35568239 35568271 -148720391 + (TG)n Simple_repeat Simple_repeat 2 33 0 391 310 80 42 chr4 35568981 35569194 -148719468 - MIR SINE MIR -11 251 31 593 305 17 51 chr4 35569619 35569715 -148718947 - MIR SINE MIR -33 229 131 1747 185 44 95 chr4 35569715 35569879 -148718783 - MSTB2 LTR MaLR 0 457 286 2172 102 0 0 chr4 35569879 35570163 -148718499 + AluSc SINE Alu 1 284 -25 1747 185 44 95 chr4 35570163 35570480 -148718182 - MSTB2 LTR MaLR -171 286 1 593 305 17 51 chr4 35570480 35570619 -148718043 - MIR SINE MIR -131 131 2 765 315 79 50 chr4 35571406 35571938 -148716724 + L2 LINE L2 2718 3271 -1 695 282 92 71 chr4 35571961 35572426 -148716236 - L2 LINE L2 -11 3302 2828 2255 106 0 0 chr4 35573023 35573325 -148715337 - AluSx SINE Alu -10 302 1 2287 123 3 3 chr4 35574418 35574777 -148713885 + L1P LINE L1 4130 4488 -1658 1096 203 38 25 chr4 35575421 35575736 -148712926 - MER33 DNA MER1_type -1 323 5 228 302 80 62 chr4 35575831 35576056 -148712606 - MIR SINE MIR -26 236 8 21 0 0 0 chr4 35576132 35576153 -148712509 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 35576369 35576390 -148712272 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 35577018 35577040 -148711622 + AT_rich Low_complexity Low_complexity 1 22 0 1963 81 81 0 chr4 35577045 35577318 -148711344 + AluSq SINE Alu 1 295 -18 1525 124 39 8 chr4 35577554 35577788 -148710874 + AluSg SINE Alu 50 290 -20 252 0 0 0 chr4 35578740 35578768 -148709894 + (TG)n Simple_repeat Simple_repeat 2 29 0 389 309 42 24 chr4 35578948 35579113 -148709549 + MIR SINE MIR 2 169 -93 246 342 117 0 chr4 35580732 35580843 -148707819 + MIR SINE MIR 21 144 -64 2109 109 0 34 chr4 35580886 35581208 -148707454 - AluSx SINE Alu -1 311 1 346 121 17 0 chr4 35582107 35582165 -148706497 + AluS SINE Alu 1 59 -249 261 0 0 0 chr4 35583520 35583549 -148705113 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1996 123 0 0 chr4 35583550 35583827 -148704835 - AluSc SINE Alu -32 277 1 225 0 0 0 chr4 35583934 35583959 -148704703 + (T)n Simple_repeat Simple_repeat 1 25 0 588 189 27 0 chr4 35585067 35585178 -148703484 + FLAM_A SINE Alu 10 123 -19 2156 121 3 0 chr4 35590690 35590996 -148697666 - AluSx SINE Alu -5 307 1 219 231 0 19 chr4 35591210 35591262 -148697400 + CT-rich Low_complexity Low_complexity 2 52 0 1791 178 3 7 chr4 35591736 35592029 -148696633 - AluSx SINE Alu -20 292 1 269 324 162 0 chr4 35593075 35593186 -148695476 - MIR SINE MIR -59 149 21 390 275 33 17 chr4 35593323 35593443 -148695219 - L2 LINE L2 -1 3312 3191 276 319 33 11 chr4 35593481 35593572 -148695090 - L2 LINE L2 -15 3298 3206 1374 146 0 0 chr4 35594174 35594379 -148694283 + AluSg/x SINE Alu 108 312 0 1640 82 0 0 chr4 35595076 35595282 -148693380 - AluY SINE Alu -105 206 1 2341 87 3 0 chr4 35595380 35595678 -148692984 - AluSp SINE Alu -14 299 1 406 298 55 9 chr4 35596171 35596331 -148692331 + MIR SINE MIR 43 205 -57 1376 225 53 50 chr4 35596346 35596840 -148691822 - MER39 LTR ERV1 0 707 1 231 88 0 0 chr4 35597776 35597810 -148690852 + (TG)n Simple_repeat Simple_repeat 1 34 0 462 306 19 38 chr4 35604084 35604244 -148684418 - MIR SINE MIR -58 204 48 1777 169 6 13 chr4 35604482 35604796 -148683866 + AluJb SINE Alu 1 312 0 537 308 76 32 chr4 35605061 35605311 -148683351 + MIR SINE MIR 2 262 0 22 35 0 0 chr4 35608561 35608590 -148680072 + AT_rich Low_complexity Low_complexity 1 29 0 28 48 0 0 chr4 35608869 35608911 -148679751 + AT_rich Low_complexity Low_complexity 1 42 0 193 214 36 18 chr4 35608944 35609000 -148679662 + MIR SINE MIR 81 137 -125 694 175 0 8 chr4 35609004 35609124 -148679538 - FLAM_A SINE Alu -14 119 1 1874 119 90 0 chr4 35610802 35611080 -148677582 - AluSx SINE Alu -9 303 1 2288 66 0 7 chr4 35611089 35611418 -148677244 - AluY SINE Alu 0 327 1 24 0 0 0 chr4 35612469 35612493 -148676169 + AT_rich Low_complexity Low_complexity 1 24 0 180 290 46 92 chr4 35612799 35612930 -148675732 - L3 LINE CR1 -1348 229 105 2092 117 0 20 chr4 35613702 35614001 -148674661 - AluSg SINE Alu -16 294 2 257 300 9 9 chr4 35614136 35614246 -148674416 + (TA)n Simple_repeat Simple_repeat 2 111 0 236 419 22 13 chr4 35614456 35614685 -148673977 - L2 LINE L2 -222 3050 2820 205 195 0 0 chr4 35615350 35615391 -148673271 + (TAA)n Simple_repeat Simple_repeat 3 43 0 259 320 0 13 chr4 35615948 35616026 -148672636 - MIR SINE MIR -115 147 71 367 373 104 19 chr4 35616164 35616922 -148671740 - L2 LINE L2 -1504 1810 988 1569 199 7 10 chr4 35617283 35617574 -148671088 - AluJo SINE Alu -16 296 7 744 219 25 6 chr4 35617817 35617977 -148670685 - MLT1A1 LTR MaLR -202 163 1 2002 133 10 3 chr4 35618100 35618393 -148670269 + AluSc SINE Alu 1 295 -14 936 193 32 5 chr4 35618435 35618622 -148670040 + MLT1A1 LTR MaLR 174 365 0 593 280 129 32 chr4 35618636 35619040 -148669622 + L2 LINE L2 1702 2144 -1170 716 220 70 78 chr4 35619133 35619381 -148669281 + MIR SINE MIR 29 260 -2 671 318 99 52 chr4 35619384 35619742 -148668920 + L2 LINE L2 2327 2667 -646 1365 132 78 0 chr4 35619742 35619961 -148668701 - MER46A DNA MER2_type 0 236 1 671 318 99 52 chr4 35619961 35620151 -148668511 + L2 LINE L2 2667 2847 -466 2118 102 14 10 chr4 35620151 35620445 -148668217 - AluSg SINE Alu -15 295 1 671 318 99 52 chr4 35620445 35620614 -148668048 + L2 LINE L2 2847 3089 -224 191 323 48 0 chr4 35623235 35623297 -148665365 + MIR SINE MIR 87 151 -57 23 54 0 0 chr4 35624329 35624366 -148664296 + AT_rich Low_complexity Low_complexity 1 37 0 2124 117 7 0 chr4 35624452 35624750 -148663912 - AluSx SINE Alu -12 300 1 987 197 98 8 chr4 35625357 35625591 -148663071 - ORSL DNA AcHobo -20 255 1 212 329 73 36 chr4 35625601 35625738 -148662924 - L2 LINE L2 -214 3058 2917 240 404 93 11 chr4 35627209 35627392 -148661270 - L2 LINE L2 -41 3231 3034 2051 122 7 0 chr4 35627431 35627718 -148660944 - AluSq SINE Alu -20 293 5 270 322 29 0 chr4 35627879 35628053 -148660609 + (TA)n Simple_repeat Simple_repeat 1 179 0 3924 157 15 40 chr4 35628998 35629725 -148658937 - MER50 LTR ERV1 -23 711 3 186 43 0 0 chr4 35630559 35630582 -148658080 + (TAA)n Simple_repeat Simple_repeat 2 24 0 210 315 167 10 chr4 35630915 35631067 -148657595 + MIR SINE MIR 16 191 -71 849 283 121 35 chr4 35631529 35632125 -148656537 + L2 LINE L2 2590 3229 -84 476 291 126 27 chr4 35634800 35635023 -148653639 - MIR SINE MIR -9 253 9 29 0 0 0 chr4 35636387 35636416 -148652246 + AT_rich Low_complexity Low_complexity 1 29 0 184 234 64 106 chr4 35637419 35637513 -148651149 - L2 LINE L2 -2441 873 784 747 0 0 0 chr4 35637862 35637945 -148650717 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 238 281 31 0 chr4 35639759 35639823 -148648839 + CT-rich Low_complexity Low_complexity 1 66 0 1295 172 0 9 chr4 35640505 35640726 -148647936 - AluJb SINE Alu -9 303 85 440 276 116 55 chr4 35640986 35641185 -148647477 - MIR SINE MIR -21 241 31 539 299 12 24 chr4 35641681 35641848 -148646814 + MIR SINE MIR 13 177 -85 193 196 109 0 chr4 35645547 35645593 -148643069 + MIR SINE MIR 128 178 -84 192 167 0 0 chr4 35646092 35646140 -148642522 + CT-rich Low_complexity Low_complexity 4 51 0 321 315 54 8 chr4 35646471 35646601 -148642061 - L2 LINE L2 0 3272 3137 1628 211 74 76 chr4 35646939 35647437 -148641225 - MLT1D LTR MaLR 0 505 9 638 242 37 48 chr4 35647894 35647951 -148640711 - MIR SINE MIR -28 234 178 828 244 11 0 chr4 35647951 35648127 -148640535 + MER45A DNA AcHobo 1 178 0 638 242 37 48 chr4 35648127 35648290 -148640372 - MIR SINE MIR -84 178 14 260 250 29 15 chr4 35648317 35648385 -148640277 + L2 LINE L2 3200 3268 -4 276 149 0 0 chr4 35648685 35648732 -148639930 + (TA)n Simple_repeat Simple_repeat 1 47 0 1897 153 6 35 chr4 35648990 35649337 -148639325 + MER1B DNA MER1_type 1 337 0 343 303 113 43 chr4 35649403 35649588 -148639074 + MIR SINE MIR 9 206 -56 253 304 75 99 chr4 35649950 35650151 -148638511 - L2 LINE L2 -1 3271 3076 33 43 0 0 chr4 35651611 35651658 -148637004 + AT_rich Low_complexity Low_complexity 1 47 0 184 77 51 0 chr4 35651658 35651697 -148636965 + (TA)n Simple_repeat Simple_repeat 1 41 0 207 114 0 0 chr4 35652704 35652739 -148635923 + (TTCC)n Simple_repeat Simple_repeat 3 37 0 21 0 0 0 chr4 35652852 35652873 -148635789 + AT_rich Low_complexity Low_complexity 1 21 0 191 348 29 0 chr4 35653081 35653150 -148635512 + MIR SINE MIR 86 156 -106 225 0 0 0 chr4 35653809 35653834 -148634828 + (TG)n Simple_repeat Simple_repeat 1 25 0 22 35 0 0 chr4 35654282 35654311 -148634351 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 35655733 35655754 -148632908 + AT_rich Low_complexity Low_complexity 1 21 0 228 319 97 40 chr4 35656416 35656642 -148632020 - L2 LINE L2 -465 2849 2611 * 311 328 106 10 chr4 35656640 35656838 -148631824 + L2 LINE L2 3097 3313 0 23 0 0 0 chr4 35656841 35656864 -148631798 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 35656976 35656999 -148631663 + AT_rich Low_complexity Low_complexity 1 23 0 1720 154 29 0 chr4 35657000 35657273 -148631389 - AluSx SINE Alu -31 281 1 198 128 0 0 chr4 35657695 35657734 -148630928 + (A)n Simple_repeat Simple_repeat 1 39 0 1479 206 24 10 chr4 35659376 35659672 -148628990 - AluJo SINE Alu -12 300 1 900 238 51 28 chr4 35659914 35659963 -148628699 - MER20 DNA MER1_type 0 219 173 1749 176 88 29 chr4 35659963 35660337 -148628325 + MSTD LTR MaLR 1 396 0 900 238 51 28 chr4 35660337 35660501 -148628161 - MER20 DNA MER1_type -46 173 1 1698 186 4 0 chr4 35660622 35660901 -148627761 + AluJo SINE Alu 1 280 -32 180 77 0 0 chr4 35660901 35660927 -148627735 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 22 0 0 0 chr4 35662043 35662065 -148626597 + AT_rich Low_complexity Low_complexity 1 22 0 193 313 30 15 chr4 35663414 35663481 -148625181 + MIR SINE MIR 75 142 -66 320 317 30 10 chr4 35664225 35664326 -148624336 - MIR3 SINE MIR -12 196 94 228 35 0 0 chr4 35664977 35665006 -148623656 + (TG)n Simple_repeat Simple_repeat 2 30 0 268 208 0 0 chr4 35665390 35665438 -148623224 + MIR SINE MIR 91 138 -124 207 0 0 0 chr4 35666662 35666685 -148621977 + (A)n Simple_repeat Simple_repeat 1 23 0 341 275 31 25 chr4 35666761 35666921 -148621741 + MER117 DNA MER1_type 1 161 -36 213 39 0 0 chr4 35667662 35667688 -148620974 + (A)n Simple_repeat Simple_repeat 1 26 0 401 270 63 21 chr4 35667760 35667949 -148620713 + MER117 DNA MER1_type 1 197 0 259 280 86 26 chr4 35667969 35668103 -148620559 + MIR SINE MIR 3 143 -65 27 0 0 0 chr4 35668389 35668416 -148620246 + AT_rich Low_complexity Low_complexity 1 27 0 713 161 50 68 chr4 35669033 35669194 -148619468 - MER20 DNA MER1_type -7 212 55 28 0 0 0 chr4 35671525 35671553 -148617109 + AT_rich Low_complexity Low_complexity 1 28 0 208 279 0 0 chr4 35672418 35672461 -148616201 - MIR3 SINE MIR -52 156 114 2258 116 0 0 chr4 35674260 35674570 -148614092 - AluSx SINE Alu -2 310 1 432 279 116 43 chr4 35674858 35675089 -148613573 - MIR SINE MIR 0 262 13 201 253 69 35 chr4 35676343 35676430 -148612232 + MIR3 SINE MIR 119 208 0 301 287 10 40 chr4 35676844 35676945 -148611717 - MIR3 SINE MIR -23 185 88 942 207 74 0 chr4 35678221 35678424 -148610238 + MER20 DNA MER1_type 2 219 0 333 0 0 0 chr4 35679349 35679386 -148609276 + (CA)n Simple_repeat Simple_repeat 2 38 0 529 317 127 53 chr4 35679699 35680421 -148608241 + L3 LINE CR1 753 1528 -49 1015 269 145 31 chr4 35730951 35731435 -148557227 + MLT1H LTR MaLR 3 541 -8 360 0 0 0 chr4 35731842 35731882 -148556780 + (T)n Simple_repeat Simple_repeat 1 40 0 21 0 0 0 chr4 35732007 35732028 -148556634 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 35732117 35732140 -148556522 + AT_rich Low_complexity Low_complexity 1 23 0 192 298 48 0 chr4 35733837 35733921 -148554741 + MIR SINE MIR 125 212 -50 360 0 0 0 chr4 35734390 35734430 -148554232 + (A)n Simple_repeat Simple_repeat 1 40 0 26 0 0 0 chr4 35734560 35734586 -148554076 + AT_rich Low_complexity Low_complexity 1 26 0 214 365 24 35 chr4 35735576 35735746 -148552916 - MER5A DNA MER1_type -5 184 17 * 320 299 39 32 chr4 35735594 35735748 -148552914 + MER5A DNA MER1_type 35 189 0 218 246 88 0 chr4 35735887 35735944 -148552718 + MIR SINE MIR 85 146 -62 578 118 0 0 chr4 35736687 35736772 -148551890 + L1MC1 LINE L1 6236 6320 -13 186 43 0 0 chr4 35737500 35737523 -148551139 + (TG)n Simple_repeat Simple_repeat 2 24 0 27 0 0 0 chr4 35738289 35738316 -148550346 + AT_rich Low_complexity Low_complexity 1 27 0 195 386 28 28 chr4 35741452 35741628 -148547034 - L2 LINE L2 -198 3074 2899 448 316 93 25 chr4 35742246 35742561 -148546101 + L2 LINE L2 2692 3032 -281 1949 119 26 17 chr4 35742964 35743266 -148545396 + AluSx SINE Alu 1 305 -7 239 226 12 48 chr4 35745213 35745297 -148543365 + L1 LINE L1 3836 3916 -2230 2428 84 7 0 chr4 35745587 35745897 -148542765 + AluSp SINE Alu 1 312 -1 871 214 6 0 chr4 35746754 35746913 -148541749 - FRAM SINE Alu -24 152 1 631 149 14 78 chr4 35746936 35747077 -148541585 - FLAM_C SINE Alu 0 143 12 225 0 0 0 chr4 35747098 35747123 -148541539 + (T)n Simple_repeat Simple_repeat 1 25 0 549 268 72 66 chr4 35747124 35747759 -148540903 + L1ME3 LINE L1 4595 5233 -913 495 0 0 0 chr4 35747768 35747823 -148540839 + (TA)n Simple_repeat Simple_repeat 1 55 0 706 302 87 54 chr4 35747862 35748322 -148540340 + L1ME3 LINE L1 5355 5829 -333 2063 122 42 33 chr4 35749211 35749572 -148539090 + THE1B LTR MaLR 1 364 0 2119 102 0 52 chr4 35750220 35750544 -148538118 - AluSg SINE Alu -3 307 1 1852 141 15 41 chr4 35751061 35751278 -148537384 + L1PB3 LINE L1 5820 6026 -128 2452 63 0 22 chr4 35751278 35751596 -148537066 + AluY SINE Alu 1 311 0 1852 141 15 41 chr4 35751596 35751719 -148536943 + L1PB3 LINE L1 6026 6151 -3 1037 165 43 57 chr4 35752899 35753129 -148535533 - MSTB LTR MaLR 0 426 200 216 191 24 0 chr4 35753130 35753172 -148535490 + GA-rich Low_complexity Low_complexity 3 45 0 894 78 0 0 chr4 35753274 35753389 -148535273 - THE1-int LTR MaLR -80 1500 1386 1357 130 43 26 chr4 35753392 35753557 -148535105 - MSTB LTR MaLR -191 235 63 5221 72 12 1 chr4 35753557 35754241 -148534421 - LTR8 LTR ERV1 0 691 1 1357 130 43 26 chr4 35754241 35754306 -148534356 - MSTB LTR MaLR -363 63 1 229 200 20 20 chr4 35754439 35754489 -148534173 + CT-rich Low_complexity Low_complexity 2 51 0 583 297 77 5 chr4 35756521 35756730 -148531932 - MIR SINE MIR -38 224 1 22 35 0 0 chr4 35758019 35758048 -148530614 + AT_rich Low_complexity Low_complexity 1 29 0 1641 104 16 0 chr4 35758883 35759134 -148529528 - L1MA2 LINE L1 0 6304 6050 25 75 0 0 chr4 35759988 35760041 -148528621 + AT_rich Low_complexity Low_complexity 1 53 0 243 245 0 0 chr4 35761056 35761109 -148527553 - L3 LINE CR1 -2 1575 1523 23 92 0 0 chr4 35764152 35764217 -148524445 + AT_rich Low_complexity Low_complexity 1 65 0 210 238 16 0 chr4 35765515 35765578 -148523084 + (TG)n Simple_repeat Simple_repeat 1 64 0 2063 105 11 0 chr4 35765784 35766152 -148522510 + AluSx SINE Alu 3 373 0 492 18 0 0 chr4 35766189 35766246 -148522416 + (TA)n Simple_repeat Simple_repeat 2 58 0 242 315 56 0 chr4 35767144 35767233 -148521429 + MIR SINE MIR 15 108 -154 1697 193 80 3 chr4 35767373 35767735 -148520927 - MLT1B LTR MaLR 0 390 1 378 295 118 8 chr4 35768179 35768384 -148520278 - MIR SINE MIR -14 248 14 279 173 0 0 chr4 35768582 35768634 -148520028 + GA-rich Low_complexity Low_complexity 3 54 0 201 357 147 35 chr4 35769162 35769305 -148519357 - MIR3 SINE MIR -15 193 35 631 116 4 2 chr4 35771048 35771297 -148517365 + AluSq SINE Alu 1 299 -14 180 0 0 0 chr4 35771879 35771899 -148516763 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1846 128 20 10 chr4 35771936 35772234 -148516428 - AluSx SINE Alu -1 311 11 239 354 107 41 chr4 35772476 35772889 -148515773 + L2 LINE L2 2828 3267 -5 398 319 63 31 chr4 35774560 35774751 -148513911 - MIR SINE MIR -36 226 30 2323 94 0 0 chr4 35775124 35775421 -148513241 + AluY SINE Alu 1 297 -14 1782 124 0 8 chr4 35775795 35776061 -148512601 - AluSx SINE Alu -9 303 40 345 300 247 0 chr4 35776350 35776540 -148512122 + MIR SINE MIR 25 261 -1 23 0 0 0 chr4 35776923 35776946 -148511716 + AT_rich Low_complexity Low_complexity 1 23 0 2066 124 3 3 chr4 35778318 35778624 -148510038 - AluSx SINE Alu -6 306 1 408 55 0 0 chr4 35779104 35779159 -148509503 + (CA)n Simple_repeat Simple_repeat 1 55 0 292 234 0 26 chr4 35779162 35779239 -148509423 + GA-rich Low_complexity Low_complexity 3 77 0 23 0 0 0 chr4 35779814 35779837 -148508825 + AT_rich Low_complexity Low_complexity 1 23 0 1742 77 18 154 chr4 35781335 35781672 -148506990 - AluSp SINE Alu -12 291 1 188 255 64 0 chr4 35782577 35782624 -148506038 + L2 LINE L2 3219 3268 -4 180 152 0 0 chr4 35783028 35783061 -148505601 + A-rich Low_complexity Low_complexity 1 33 0 3859 159 18 26 chr4 35783904 35784620 -148504042 - MER50 LTR ERV1 -24 710 1 403 265 11 54 chr4 35784681 35784866 -148503796 + CT-rich Low_complexity Low_complexity 4 180 0 234 217 0 0 chr4 35784879 35784948 -148503714 + T-rich Low_complexity Low_complexity 1 69 0 25 65 0 0 chr4 35785911 35785957 -148502705 + AT_rich Low_complexity Low_complexity 1 46 0 27 0 0 0 chr4 35787491 35787518 -148501144 + AT_rich Low_complexity Low_complexity 1 27 0 1980 199 72 94 chr4 35787866 35788710 -148499952 - LTR1B LTR ERV1 0 826 1 343 302 249 0 chr4 35788729 35788918 -148499744 - MIR SINE MIR -13 249 14 2048 203 17 19 chr4 35789979 35790398 -148498264 + MER47B DNA MER2_type 1 418 0 646 267 14 0 chr4 35790427 35790573 -148498089 + MIR SINE MIR 4 151 -111 1603 127 15 112 chr4 35790617 35790948 -148497714 - AluSx SINE Alu -1 301 3 246 264 11 46 chr4 35792407 35792494 -148496168 + MER112 DNA MER1_type 2 85 -175 256 244 73 0 chr4 35792503 35792585 -148496077 - L1MC4 LINE L1 -1341 6701 6614 * 276 182 32 13 chr4 35792509 35792603 -148496059 + L1MC4 LINE L1 1995 6983 -1339 219 167 0 0 chr4 35792622 35792664 -148495998 + (CA)n Simple_repeat Simple_repeat 1 42 0 23 54 0 0 chr4 35794097 35794134 -148494528 + AT_rich Low_complexity Low_complexity 1 37 0 1876 109 18 18 chr4 35794134 35794408 -148494254 - AluSx SINE Alu -28 284 11 1088 260 78 27 chr4 35795014 35795387 -148493275 - MLT1D LTR MaLR 0 505 114 402 198 12 23 chr4 35795515 35795601 -148493061 - MLT1D LTR MaLR -418 87 3 2164 121 0 0 chr4 35798729 35799036 -148489626 + AluSc SINE Alu 1 307 -2 700 281 212 40 chr4 35799142 35799591 -148489071 - MLT1H LTR MaLR -2 547 22 767 227 93 53 chr4 35800132 35800453 -148488209 - MER46C DNA MER2_type -4 334 1 803 317 46 8 chr4 35800457 35800697 -148487965 - MIR SINE MIR -6 256 8 526 265 99 27 chr4 35800760 35800983 -148487679 - MIR SINE MIR -4 258 20 1969 113 3 3 chr4 35801850 35802178 -148486484 + AluSx SINE Alu 1 328 0 1849 136 3 18 chr4 35803267 35803553 -148485109 + AluSx SINE Alu 29 310 -2 215 343 150 21 chr4 35803890 35804030 -148484632 + L3b LINE CR1 1285 1442 -141 210 71 0 0 chr4 35805158 35805186 -148483476 + (A)n Simple_repeat Simple_repeat 1 28 0 231 88 0 0 chr4 35807662 35807696 -148480966 + (A)n Simple_repeat Simple_repeat 1 34 0 25 0 0 0 chr4 35808214 35808239 -148480423 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr4 35810227 35810252 -148478410 + AT_rich Low_complexity Low_complexity 1 25 0 306 0 0 0 chr4 35810946 35810980 -148477682 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr4 35812277 35812298 -148476364 + AT_rich Low_complexity Low_complexity 1 21 0 206 163 0 20 chr4 35812778 35812827 -148475835 + T-rich Low_complexity Low_complexity 4 51 0 1211 207 28 38 chr4 35812829 35813119 -148475543 - AluJo SINE Alu -24 288 2 22 56 0 0 chr4 35814477 35814513 -148474149 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chr4 35814916 35814954 -148473708 + AT_rich Low_complexity Low_complexity 1 38 0 2349 97 0 0 chr4 35814961 35815259 -148473403 - AluSc SINE Alu -11 298 1 565 198 9 0 chr4 35815474 35815585 -148473077 - MER58 DNA MER1_type 0 2420 2309 393 301 9 9 chr4 35815590 35815703 -148472959 - MER58 DNA MER1_type -2303 117 5 273 208 292 0 chr4 35815782 35815878 -148472784 - MER94 DNA DNA -10 124 1 210 330 44 11 chr4 35818420 35818511 -148470151 - L2 LINE L2 -37 3235 3142 2919 112 12 0 chr4 35819133 35819536 -148469126 + MLT2A2 LTR ERVL 1 408 -45 277 256 0 0 chr4 35819547 35819629 -148469033 - L1MC4 LINE L1 -1347 6695 6614 327 253 0 0 chr4 35819629 35819724 -148468938 + (TA)n Simple_repeat Simple_repeat 2 96 0 274 192 0 0 chr4 35819741 35819793 -148468869 + MLT2A1 LTR ERVL 391 442 -2 1541 220 46 29 chr4 35819799 35820149 -148468513 - MLT1A1 LTR MaLR -3 362 7 288 136 17 17 chr4 35820275 35820334 -148468328 - MER3 DNA MER1_type -8 201 143 228 162 0 59 chr4 35821809 35821877 -148466785 + A-rich Low_complexity Low_complexity 3 66 0 29 47 0 0 chr4 35823128 35823171 -148465491 + AT_rich Low_complexity Low_complexity 1 43 0 737 268 64 5 chr4 35823197 35823417 -148465245 - MIR SINE MIR -26 236 4 297 322 8 42 chr4 35824061 35824179 -148464483 + L2 LINE L2 3142 3255 -17 216 0 0 0 chr4 35825592 35825616 -148463046 + (TG)n Simple_repeat Simple_repeat 2 25 0 290 130 0 0 chr4 35825668 35825714 -148462948 + MADE1 DNA Mariner 35 80 0 529 70 0 0 chr4 35825718 35825789 -148462873 + MADE1 DNA Mariner 10 80 0 440 321 59 5 chr4 35826023 35826231 -148462431 + MIR SINE MIR 31 260 -2 1075 217 31 11 chr4 35826616 35827107 -148461555 - MER34 LTR ERV1 -3 539 12 635 84 11 0 chr4 35827130 35827225 -148461437 + (TCTA)n Simple_repeat Simple_repeat 4 99 0 1433 52 0 0 chr4 35827225 35827399 -148461263 - L1PA7 LINE L1 -15 6139 5966 2027 97 10 55 chr4 35827628 35827939 -148460723 + AluSg SINE Alu 1 297 -13 230 377 142 9 chr4 35829919 35830025 -148458637 - L2 LINE L2 0 3272 3153 216 179 0 0 chr4 35830032 35830071 -148458591 + (TG)n Simple_repeat Simple_repeat 2 40 0 1492 167 161 23 chr4 35830225 35830573 -148458089 + MSTD LTR MaLR 1 396 0 211 322 61 70 chr4 35830989 35831104 -148457558 - L2 LINE L2 -1 3312 3199 2016 126 13 7 chr4 35831136 35831438 -148457224 - AluSx SINE Alu -8 304 1 780 149 6 31 chr4 35831440 35831601 -148457061 - L1MC3 LINE L1 -7 7778 7622 336 191 12 95 chr4 35831645 35831729 -148456933 - MLT2B3 LTR ERVL -268 286 210 1983 166 51 31 chr4 35831729 35832276 -148456386 - MLT2A2 LTR ERVL 0 554 1 1064 184 75 0 chr4 35832276 35832475 -148456187 - MLT2B3 LTR ERVL -340 214 1 3002 211 41 19 chr4 35832475 35832931 -148455731 - L1MC3 LINE L1 -163 7622 7142 2236 101 0 0 chr4 35832931 35833219 -148455443 - AluSg SINE Alu -22 288 1 3002 211 41 19 chr4 35833219 35833496 -148455166 - L1MC3 LINE L1 -643 7142 6873 2092 138 3 6 chr4 35833620 35833932 -148454730 - AluSx SINE Alu -1 311 1 435 38 0 0 chr4 35835017 35835070 -148453592 + (TC)n Simple_repeat Simple_repeat 2 54 0 27 0 0 0 chr4 35835964 35835991 -148452671 + AT_rich Low_complexity Low_complexity 1 27 0 198 0 0 0 chr4 35835991 35836013 -148452649 + (TG)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr4 35836063 35836084 -148452578 + AT_rich Low_complexity Low_complexity 1 21 0 272 182 11 0 chr4 35836167 35836255 -148452407 + (CA)n Simple_repeat Simple_repeat 1 89 0 1134 180 10 10 chr4 35836296 35836502 -148452160 - MER46A DNA MER2_type -29 207 2 3652 124 42 66 chr4 35837095 35837271 -148451391 + Tigger3b DNA MER2_type 1 180 -2848 1983 120 10 7 chr4 35837271 35837562 -148451100 - AluSx SINE Alu -18 294 3 3652 124 42 66 chr4 35837562 35838079 -148450583 + Tigger3b DNA MER2_type 180 677 -554 5814 131 26 4 chr4 35838124 35839570 -148449092 - L1PA11 LINE L1 0 6174 4699 3051 113 38 47 chr4 35839570 35839688 -148448974 + Tigger3b DNA MER2_type 660 778 -2251 1644 147 0 89 chr4 35839688 35840002 -148448660 - AluSx SINE Alu -26 286 1 3051 113 38 47 chr4 35840002 35840434 -148448228 + Tigger3b DNA MER2_type 778 1205 -27 418 326 90 15 chr4 35840873 35841207 -148447455 - MARNA DNA Mariner -155 431 73 2264 103 3 6 chr4 35841412 35841723 -148446939 - AluY SINE Alu -1 310 1 29 28 0 0 chr4 35841780 35841816 -148446846 + AT_rich Low_complexity Low_complexity 1 36 0 655 205 54 12 chr4 35841942 35842108 -148446554 - MER96B DNA MER1_type? -1 416 244 2349 83 0 13 chr4 35842307 35842620 -148446042 - AluY SINE Alu -2 309 1 464 367 57 16 chr4 35843428 35843676 -148444986 + MIR SINE MIR 1 258 -4 21 0 0 0 chr4 35844074 35844095 -148444567 + AT_rich Low_complexity Low_complexity 1 21 0 287 114 0 0 chr4 35844391 35844435 -148444227 - MADE1 DNA Mariner 0 80 37 427 288 0 30 chr4 35844499 35844631 -148444031 - MLT1L LTR MaLR -129 486 359 244 213 187 0 chr4 35844831 35844906 -148443756 - MLT1L LTR MaLR -526 89 1 294 29 0 0 chr4 35844913 35844948 -148443714 + (CA)n Simple_repeat Simple_repeat 2 36 0 2192 95 3 7 chr4 35845932 35846227 -148442435 + AluSg SINE Alu 1 294 -16 1887 111 50 30 chr4 35847459 35847757 -148440905 + AluSp SINE Alu 1 304 -9 1861 137 58 15 chr4 35848241 35848570 -148440092 - MER61A LTR ERV1 0 343 1 5256 149 120 27 chr4 35848791 35850200 -148438462 - pTR5 LTR ERV1 0 2438 741 400 330 141 19 chr4 35850516 35850998 -148437664 + HAL1b LINE L1 252 792 -556 2294 132 31 8 chr4 35851350 35851706 -148436956 - THE1B LTR MaLR 0 364 1 355 351 67 14 chr4 35851781 35851989 -148436673 - L3 LINE CR1 -129 1448 1230 1820 132 38 14 chr4 35853496 35853785 -148434877 - AluSx SINE Alu -16 296 1 22 0 0 0 chr4 35854265 35854287 -148434375 + AT_rich Low_complexity Low_complexity 1 22 0 303 216 52 82 chr4 35854506 35854640 -148434022 + MLT1J LTR MaLR 52 181 -330 26 93 0 0 chr4 35856118 35856193 -148432469 + AT_rich Low_complexity Low_complexity 1 75 0 219 139 0 0 chr4 35857006 35857042 -148431620 + (A)n Simple_repeat Simple_repeat 1 36 0 2661 94 3 0 chr4 35857526 35857887 -148430775 + THE1B LTR MaLR 1 362 -2 2040 116 12 44 chr4 35860052 35860371 -148428291 - AluSx SINE Alu 0 312 4 690 249 62 104 chr4 35860507 35860605 -148428057 + MLT1F LTR MaLR 1 102 -440 2087 126 0 10 chr4 35860605 35860898 -148427764 + AluSx SINE Alu 1 290 -22 690 249 62 104 chr4 35860898 35861153 -148427509 + MLT1F LTR MaLR 102 339 -203 892 236 18 84 chr4 35861169 35861444 -148427218 + MLT1D-int LTR MaLR 1109 1365 -6 1164 191 96 71 chr4 35861477 35861801 -148426861 + MLT1D LTR MaLR 28 359 -146 22 35 0 0 chr4 35861845 35861874 -148426788 + AT_rich Low_complexity Low_complexity 1 29 0 545 301 20 0 chr4 35862069 35862265 -148426397 - L1ME2 LINE L1 0 6164 5965 690 262 0 6 chr4 35862402 35862566 -148426096 - L1ME2 LINE L1 -592 5572 5410 2844 131 17 0 chr4 35862566 35862985 -148425677 + MSTB1 LTR MaLR 1 426 -6 1653 305 81 36 chr4 35862991 35863015 -148425647 - L1ME2 LINE L1 -756 5414 5393 2265 99 61 32 chr4 35863015 35863080 -148425582 - THE1A LTR MaLR 0 355 293 2029 107 7 0 chr4 35863080 35863351 -148425311 + AluSq SINE Alu 41 313 0 2265 99 61 32 chr4 35863351 35863630 -148425032 - THE1A LTR MaLR -62 293 1 10377 113 34 0 chr4 35863630 35865158 -148423504 - THE1A-int LTR MaLR 0 1580 1 2381 106 23 3 chr4 35865158 35865506 -148423156 - THE1A LTR MaLR 0 355 1 1653 305 81 36 chr4 35865506 35866359 -148422303 - L1ME2 LINE L1 -777 5393 4449 4600 74 44 61 chr4 35866359 35867059 -148421603 + LTR12 LTR ERV1 1 688 0 1653 305 81 36 chr4 35867059 35867510 -148421152 - L1ME2 LINE L1 -1721 4449 4020 323 225 0 71 chr4 35867503 35867619 -148421043 - L1MA7 LINE L1 -213 6083 5983 * 27 0 0 0 chr4 35867855 35867882 -148420780 + AT_rich Low_complexity Low_complexity 1 27 0 2358 78 3 0 chr4 35868044 35868338 -148420324 + AluSp SINE Alu 1 295 -18 263 295 0 0 chr4 35868366 35868461 -148420201 + L1MC4 LINE L1 6614 6708 -1334 314 270 16 9 chr4 35868528 35868653 -148420009 - L1M4 LINE L1 -364 5814 5685 2734 16 0 10 chr4 35868937 35869249 -148419413 - AluYb8 SINE Alu -9 309 1 24 0 0 0 chr4 35870204 35870228 -148418434 + AT_rich Low_complexity Low_complexity 1 24 0 1932 125 0 0 chr4 35870781 35871053 -148417609 + AluY SINE Alu 24 295 -16 253 286 118 17 chr4 35872118 35872237 -148416425 + MIR SINE MIR 121 251 -11 21 36 0 0 chr4 35872594 35872622 -148416040 + AT_rich Low_complexity Low_complexity 1 28 0 209 200 33 0 chr4 35873936 35873996 -148414666 + (TATG)n Simple_repeat Simple_repeat 3 64 0 2209 101 7 0 chr4 35874277 35874584 -148414078 + AluSp SINE Alu 1 309 -4 230 177 0 48 chr4 35875042 35875104 -148413558 + A-rich Low_complexity Low_complexity 3 61 0 279 334 87 49 chr4 35875107 35875290 -148413372 + MIR SINE MIR 28 214 -48 875 311 80 27 chr4 35875368 35875780 -148412882 + L2 LINE L2 2879 3312 -1 1508 204 32 55 chr4 35877099 35877501 -148411161 + MSTD LTR MaLR 4 396 0 21 36 0 0 chr4 35879344 35879372 -148409290 + AT_rich Low_complexity Low_complexity 1 28 0 277 232 9 89 chr4 35879750 35879862 -148408800 + MLT1H LTR MaLR 4 106 -443 1208 226 84 42 chr4 35879869 35880298 -148408364 - MLT1C LTR MaLR -16 451 5 577 267 87 103 chr4 35880302 35880561 -148408101 + MLT1H LTR MaLR 111 362 -187 1958 127 65 39 chr4 35880561 35880916 -148407746 + THE1B LTR MaLR 1 364 0 577 267 87 103 chr4 35880916 35881102 -148407560 + MLT1H LTR MaLR 362 549 0 1296 139 0 14 chr4 35881738 35881947 -148406715 + AluSg/x SINE Alu 105 310 -2 242 133 67 50 chr4 35882084 35882144 -148406518 - MLT1H LTR MaLR -202 340 280 1813 64 0 0 chr4 35882238 35882473 -148406189 - L1PA5 LINE L1 0 6154 5920 280 248 0 115 chr4 35882474 35882531 -148406131 - MLT1H LTR MaLR -285 264 225 1784 146 42 73 chr4 35882531 35882916 -148405746 - THE1C LTR MaLR 0 375 3 280 248 0 115 chr4 35882916 35882971 -148405691 - MLT1H LTR MaLR -324 225 165 201 226 0 0 chr4 35883419 35883472 -148405190 + (TG)n Simple_repeat Simple_repeat 2 54 0 1277 228 65 20 chr4 35884357 35884708 -148403954 - MLT1D LTR MaLR 0 505 139 25 65 0 0 chr4 35884843 35884889 -148403773 + AT_rich Low_complexity Low_complexity 1 46 0 1508 112 10 0 chr4 35885099 35885304 -148403358 - AluSc SINE Alu -20 289 83 302 169 26 78 chr4 35885867 35885944 -148402718 + MLT1L LTR MaLR 156 228 -387 661 259 45 77 chr4 35885948 35886390 -148402272 - MER57A LTR ERV1 -4 399 1 393 241 63 38 chr4 35886509 35886667 -148401995 + MLT1L LTR MaLR 421 582 -33 808 268 50 71 chr4 35886789 35887129 -148401533 - MLT1A2 LTR MaLR -41 333 1 853 241 113 43 chr4 35887244 35887501 -148401161 - AluJo SINE Alu -35 277 3 26 30 0 0 chr4 35887596 35887629 -148401033 + AT_rich Low_complexity Low_complexity 1 33 0 238 307 10 30 chr4 35887729 35887830 -148400832 - L1ME LINE L1 -394 5727 5629 430 226 33 122 chr4 35888356 35888537 -148400125 - MER91B DNA MER1_type -6 184 20 219 263 0 0 chr4 35888627 35888707 -148399955 + (TA)n Simple_repeat Simple_repeat 1 80 0 225 0 0 0 chr4 35888766 35888791 -148399871 + (CA)n Simple_repeat Simple_repeat 2 26 0 318 147 0 0 chr4 35888996 35889064 -148399598 + (TC)n Simple_repeat Simple_repeat 1 68 0 342 0 0 0 chr4 35889064 35889102 -148399560 + (CA)n Simple_repeat Simple_repeat 1 38 0 193 94 62 16 chr4 35889588 35889652 -148399010 + (TA)n Simple_repeat Simple_repeat 2 68 0 23 33 0 0 chr4 35889663 35889693 -148398969 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr4 35889724 35889747 -148398915 + AT_rich Low_complexity Low_complexity 1 23 0 1656 95 50 0 chr4 35889925 35890147 -148398515 + AluSc SINE Alu 59 291 -18 1496 199 36 0 chr4 35890147 35890428 -148398234 - Tigger3(Golem) DNA MER2_type -2738 291 1 593 238 0 16 chr4 35890442 35890568 -148398094 - FLAM_A SINE Alu -9 124 1 444 301 81 17 chr4 35891683 35891919 -148396743 - MER112 DNA MER1_type -4 256 6 418 243 71 62 chr4 35893016 35893226 -148395436 + MLT1J1 LTR MaLR 1 212 -234 252 329 168 31 chr4 35893448 35893609 -148395053 - MIR SINE MIR -58 204 22 585 302 40 22 chr4 35894000 35894222 -148394440 + MIR SINE MIR 31 256 -6 2300 73 0 7 chr4 35894947 35895248 -148393414 + AluY SINE Alu 1 299 -12 243 250 30 10 chr4 35895343 35895443 -148393219 + (TA)n Simple_repeat Simple_repeat 2 103 0 191 382 91 30 chr4 35897034 35897233 -148391429 + L2 LINE L2 2731 2941 -373 2049 104 0 39 chr4 35898143 35898450 -148390212 - AluSq SINE Alu -18 295 1 2549 133 21 25 chr4 35898559 35898995 -148389667 - Tigger2a DNA MER2_type 0 434 1 327 262 9 71 chr4 35898995 35899209 -148389453 + MER112 DNA MER1_type 47 248 -12 2010 192 39 15 chr4 35899358 35899770 -148388892 - MER61C LTR ERV1 0 434 13 369 121 0 0 chr4 35900054 35900112 -148388550 + L1MA2 LINE L1 6233 6290 -14 2167 126 0 7 chr4 35900142 35900444 -148388218 + AluSx SINE Alu 1 300 -12 28 0 0 0 chr4 35900892 35900920 -148387742 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 35900939 35900960 -148387702 + AT_rich Low_complexity Low_complexity 1 21 0 369 307 135 43 chr4 35901026 35901352 -148387310 + L2 LINE L2 2619 2974 -340 629 279 17 6 chr4 35901792 35901971 -148386691 - MIR SINE MIR -80 182 2 200 226 19 19 chr4 35952475 35952581 -148336081 + GA-rich Low_complexity Low_complexity 4 109 0 836 142 0 0 chr4 35952891 35953011 -148335651 - Alu SINE Alu -191 120 1 198 0 0 0 chr4 35953181 35953203 -148335459 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 624 264 47 5 chr4 35953314 35953507 -148335155 - L1MB2 LINE L1 -2 6169 5969 3966 164 42 12 chr4 35953511 35954321 -148334341 - L1MA4 LINE L1 -4 6296 5463 659 283 113 25 chr4 35954322 35954831 -148333831 + LTR28 LTR ERV1 1 1303 -134 274 139 0 0 chr4 35955020 35955063 -148333599 - L1MA4 LINE L1 -835 5465 5423 3570 221 73 25 chr4 35955489 35957383 -148331279 - L1MC1 LINE L1 -313 6300 4314 1985 199 3 0 chr4 35957384 35957730 -148330932 + MER7A DNA MER2_type 2 346 0 361 244 46 35 chr4 35957730 35957909 -148330753 - L1MC1 LINE L1 -2111 4315 4136 318 70 0 0 chr4 35957910 35957953 -148330709 - L1PA7 LINE L1 -11 6143 6101 2369 200 67 20 chr4 35957963 35958855 -148329807 - L1MC1 LINE L1 -3654 2772 1837 29 47 0 0 chr4 35958863 35958906 -148329756 + AT_rich Low_complexity Low_complexity 1 43 0 5113 170 73 63 chr4 35959051 35960260 -148328402 - L1MC1 LINE L1 -5186 1240 20 21 57 0 0 chr4 35960588 35960623 -148328039 + AT_rich Low_complexity Low_complexity 1 35 0 1347 182 97 0 chr4 35961547 35961816 -148326846 - AluSx SINE Alu -17 295 1 59 53 0 0 chr4 35962065 35962159 -148326503 + AT_rich Low_complexity Low_complexity 1 94 0 275 379 26 13 chr4 35962415 35962568 -148326094 - MIR SINE MIR -86 176 22 240 35 0 0 chr4 35962998 35963027 -148325635 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 579 275 110 14 chr4 35963131 35963394 -148325268 - MLT1H LTR MaLR -219 330 1 904 275 16 12 chr4 35963452 35963703 -148324959 + MIR SINE MIR 1 252 -10 307 318 0 37 chr4 35964078 35964185 -148324477 - LTR16C LTR ERVL 0 491 389 1204 197 0 5 chr4 35964578 35964791 -148323871 - MLT1A1 LTR MaLR -2 363 152 2492 230 13 40 chr4 35964934 35965559 -148323103 + MLT1E2 LTR MaLR 19 626 0 223 214 0 18 chr4 35965884 35965940 -148322722 + A-rich Low_complexity Low_complexity 2 56 0 236 277 23 69 chr4 35965970 35966100 -148322562 - L2 LINE L2 -472 2842 2719 1151 256 35 19 chr4 35966272 35966633 -148322029 + L1ME2 LINE L1 5803 6330 -4 24 0 0 0 chr4 35966941 35966965 -148321697 + AT_rich Low_complexity Low_complexity 1 24 0 254 299 45 30 chr4 35967097 35967231 -148321431 - L1M4 LINE L1 -1905 4241 4106 275 316 38 38 chr4 35967375 35967508 -148321154 + MIR SINE MIR 68 200 -62 415 250 65 48 chr4 35967516 35967684 -148320978 + MLT1H LTR MaLR 1 171 -378 24 77 0 0 chr4 35967905 35967957 -148320705 + AT_rich Low_complexity Low_complexity 1 52 0 261 269 0 0 chr4 35968193 35968260 -148320402 + (TA)n Simple_repeat Simple_repeat 2 68 0 293 234 93 9 chr4 35968379 35968486 -148320176 + MER58 DNA MER1_type 21 136 -2284 338 349 43 29 chr4 35968572 35968781 -148319881 - HAL1b LINE L1 -747 601 390 1823 207 31 3 chr4 35968809 35969161 -148319501 + MLT2D LTR ERVL 1 362 -52 288 231 0 0 chr4 35969233 35969337 -148319325 + (TA)n Simple_repeat Simple_repeat 1 104 0 445 314 23 8 chr4 35969342 35969606 -148319056 - L1MEc LINE L1 -4883 1513 1246 1901 185 43 41 chr4 35969685 35970128 -148318534 - L1MB8 LINE L1 -13 6165 5722 2082 125 3 3 chr4 35970568 35970871 -148317791 + AluSx SINE Alu 1 303 -9 1144 126 0 24 chr4 35970871 35971038 -148317624 + AluSq SINE Alu 134 296 -17 661 265 0 0 chr4 35971437 35971584 -148317078 - FRAM SINE Alu -26 150 4 531 294 59 20 chr4 35971587 35971791 -148316871 + MLT1H LTR MaLR 71 282 -267 354 238 68 62 chr4 35971839 35972008 -148316654 + MLT1H LTR MaLR 371 547 -8 225 393 67 7 chr4 35972613 35972763 -148315899 - MIR3 SINE MIR -14 194 36 202 234 0 0 chr4 35973238 35973285 -148315377 + MIR SINE MIR 97 143 -119 1537 228 33 20 chr4 35973318 35973709 -148314953 - MSTD LTR MaLR 0 396 1 2641 280 49 28 chr4 35974731 35975796 -148312866 + L1MC3 LINE L1 8 1076 -4969 673 264 42 2 chr4 35975815 35976167 -148312495 + L1MC3 LINE L1 2504 2873 -3691 270 89 0 22 chr4 35976173 35976216 -148312446 + MLT1A1 LTR MaLR 63 104 -261 245 140 80 0 chr4 35976216 35976266 -148312396 - MLT2A2 LTR ERVL 0 453 400 263 648 0 0 chr4 35976272 35976451 -148312211 + (TA)n Simple_repeat Simple_repeat 2 180 0 268 122 0 0 chr4 35976476 35976517 -148312145 + MLT2A2 LTR ERVL 405 445 -8 237 33 0 0 chr4 35976517 35976547 -148312115 + (TC)n Simple_repeat Simple_repeat 2 31 0 225 139 0 0 chr4 35976547 35976590 -148312072 + (TA)n Simple_repeat Simple_repeat 1 43 0 271 261 15 0 chr4 35976728 35976793 -148311869 - AluJ/FRAM SINE Alu -12 290 225 * 2514 86 11 30 chr4 35976783 35977155 -148311507 - MLT2A1 LTR ERVL -79 365 1 1262 252 8 4 chr4 35977155 35977420 -148311242 + MLT1A1 LTR MaLR 100 365 0 5788 257 58 39 chr4 35977420 35980693 -148307969 + L1MC3 LINE L1 2958 5821 -743 1203 309 27 38 chr4 35980713 35981270 -148307392 + L1PA15-16 LINE L1 1 551 -6298 8182 248 55 42 chr4 35981459 35983063 -148305599 + L1M2 LINE L1 655 2237 -4611 1718 52 5 0 chr4 35983063 35983274 -148305388 + AluYa5 SINE Alu 1 212 -99 8182 248 55 42 chr4 35983274 35984555 -148304107 + L1M2 LINE L1 2237 3500 -3348 306 0 0 0 chr4 35984555 35984589 -148304073 + (CA)n Simple_repeat Simple_repeat 2 35 0 8182 248 55 42 chr4 35984589 35985964 -148302698 + L1M2 LINE L1 3500 5270 -1578 3461 230 45 43 chr4 35985953 35987011 -148301651 + L1MC3 LINE L1 6379 7438 -765 * 405 418 31 15 chr4 35987039 35987515 -148301147 + L1 LINE L1 1 484 -5797 1147 257 56 24 chr4 35987829 35988242 -148300420 + L1 LINE L1 1122 1547 -4734 5101 186 22 26 chr4 35988405 35989538 -148299124 + L1 LINE L1 3637 4765 -1585 12618 258 31 30 chr4 35989547 35994984 -148293678 + L1MA4 LINE L1 12 6003 -1735 5276 152 10 4 chr4 35994984 35996521 -148292141 + L1PA15 LINE L1 4611 6165 0 12618 258 31 30 chr4 35996521 35998253 -148290409 + L1MA4 LINE L1 6003 7732 -6 3429 204 19 18 chr4 35998245 35998575 -148290087 + L1MC3 LINE L1 6196 5937 -422 * 2289 41 0 34 chr4 35998575 35998893 -148289769 + AluY SINE Alu 1 308 0 3429 204 19 18 chr4 35998893 35999317 -148289345 + L1MC3 LINE L1 5936 6358 -1 598 304 78 0 chr4 35999351 35999581 -148289081 - MIR SINE MIR -1 261 14 1299 130 14 5 chr4 36000108 36000324 -148288338 - L1MA4A LINE L1 0 6303 6086 289 143 0 0 chr4 36000327 36000376 -148288286 + L1MA4A LINE L1 6039 6087 -216 2020 99 4 15 chr4 36001049 36001321 -148287341 - AluSx SINE Alu -23 289 21 31 68 0 0 chr4 36001321 36001380 -148287282 + AT_rich Low_complexity Low_complexity 1 59 0 195 184 0 0 chr4 36001448 36001486 -148287176 + CT-rich Low_complexity Low_complexity 2 39 0 2025 128 0 0 chr4 36002621 36002917 -148285745 - AluSg1 SINE Alu -13 296 1 21 82 0 0 chr4 36003197 36003246 -148285416 + AT_rich Low_complexity Low_complexity 1 49 0 3341 192 22 56 chr4 36003589 36004344 -148284318 - L1MB3 LINE L1 -120 6063 5336 1515 186 38 21 chr4 36004344 36004634 -148284028 - AluJo SINE Alu -17 295 1 3341 192 22 56 chr4 36004634 36004785 -148283877 - L1MB3 LINE L1 -847 5336 5181 1183 262 124 6 chr4 36004797 36005312 -148283350 - Charlie7 DNA MER1_type -500 2112 1537 638 297 59 24 chr4 36005427 36005481 -148283181 - Charlie7 DNA MER1_type -1235 1377 1326 2324 129 5 24 chr4 36005481 36005852 -148282810 + THE1B LTR MaLR 1 364 0 638 297 59 24 chr4 36005852 36006087 -148282575 - Charlie7 DNA MER1_type -1286 1326 1078 22 94 0 0 chr4 36006281 36006345 -148282317 + AT_rich Low_complexity Low_complexity 1 64 0 23 54 0 0 chr4 36006532 36006569 -148282093 + AT_rich Low_complexity Low_complexity 1 37 0 596 231 19 13 chr4 36006901 36007057 -148281605 - L1MD3 LINE L1 -2 7993 7837 2164 115 44 3 chr4 36007157 36007497 -148281165 - LTR57 LTR ERVL -57 354 1 21 36 0 0 chr4 36007608 36007636 -148281026 + AT_rich Low_complexity Low_complexity 1 28 0 222 136 0 0 chr4 36007751 36007795 -148280867 + (CA)n Simple_repeat Simple_repeat 2 45 0 979 180 0 6 chr4 36008197 36008375 -148280287 - MER6A DNA MER2_type 0 605 429 252 0 0 0 chr4 36008382 36008410 -148280252 + (CA)n Simple_repeat Simple_repeat 2 29 0 1122 187 5 29 chr4 36008411 36008620 -148280042 - MER6A DNA MER2_type -385 220 17 1994 136 0 0 chr4 36008709 36009003 -148279659 + AluSg SINE Alu 1 294 -16 217 410 78 0 chr4 36009219 36009385 -148279277 + L2 LINE L2 2178 2356 -958 242 272 22 65 chr4 36011253 36011304 -148277358 + L2 LINE L2 3190 3237 -76 2077 122 0 7 chr4 36011304 36011598 -148277064 - AluSx SINE Alu -20 292 1 242 272 22 65 chr4 36011598 36011638 -148277024 + L2 LINE L2 3237 3277 -36 231 254 0 48 chr4 36012087 36012150 -148276512 - L3 LINE CR1 -4 1573 1514 2170 90 0 4 chr4 36012632 36012954 -148275708 + AluSc SINE Alu 1 321 0 198 349 84 42 chr4 36013970 36014136 -148274526 + MIR SINE MIR 3 175 -87 279 316 78 31 chr4 36014997 36015190 -148273472 - MIR SINE MIR -8 254 53 22 0 0 0 chr4 36017236 36017258 -148271404 + AT_rich Low_complexity Low_complexity 1 22 0 2184 87 0 10 chr4 36018489 36018787 -148269875 - AluY SINE Alu 0 311 17 4130 195 35 20 chr4 36018796 36020532 -148268130 - L1MA7 LINE L1 -154 6137 4372 242 192 68 14 chr4 36020540 36020613 -148268049 - L1MC4 LINE L1 -1328 6714 6638 200 224 40 13 chr4 36021852 36021928 -148266734 + (TA)n Simple_repeat Simple_repeat 2 79 0 2411 239 54 8 chr4 36021984 36022705 -148265957 - MER3 DNA MER1_type 0 786 80 2244 24 0 0 chr4 36022905 36023159 -148265503 - AluY SINE Alu -8 303 50 2135 110 3 26 chr4 36024158 36024467 -148264195 + AluSx SINE Alu 3 304 -8 393 246 173 52 chr4 36024623 36024728 -148263934 + MER58C DNA MER1_type 2 93 -2327 243 0 0 0 chr4 36024728 36024755 -148263907 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 393 246 173 52 chr4 36024755 36024840 -148263822 + MER58C DNA MER1_type 93 215 0 25 65 0 0 chr4 36024944 36024990 -148263672 + AT_rich Low_complexity Low_complexity 1 46 0 288 268 299 0 chr4 36026157 36026284 -148262378 + ERVL LTR ERVL 4161 4325 -1439 252 0 0 0 chr4 36027534 36027562 -148261100 + (TG)n Simple_repeat Simple_repeat 2 29 0 2788 16 0 0 chr4 36029011 36029322 -148259340 - AluYa5 SINE Alu 0 311 1 3388 98 6 0 chr4 36029842 36030322 -148258340 + L1PA7 LINE L1 5666 6148 -6 1057 79 0 0 chr4 36030355 36030494 -148258168 - AluY SINE Alu -15 296 158 410 262 8 16 chr4 36030498 36030620 -148258042 + L1M4 LINE L1 4942 5062 -1084 874 258 39 35 chr4 36030707 36031154 -148257508 + MLT1G3 LTR MaLR 1 549 -46 252 0 0 0 chr4 36033071 36033099 -148255563 + (TG)n Simple_repeat Simple_repeat 2 29 0 2170 78 0 0 chr4 36033099 36033383 -148255279 - AluY SINE Alu -27 284 1 247 298 16 16 chr4 36033674 36033795 -148254867 + L1ME4a LINE L1 5979 6099 -22 1915 133 20 3 chr4 36033884 36034186 -148254476 - AluSx SINE Alu -5 307 1 279 329 37 24 chr4 36034353 36034599 -148254063 - HERVL LTR ERVL -1667 3987 3739 1108 274 74 6 chr4 36034622 36034987 -148253675 - HERVL LTR ERVL -3998 998 609 1032 319 56 12 chr4 36035076 36035558 -148253104 - HERVL LTR ERVL -4492 504 2 409 219 0 0 chr4 36035559 36035641 -148253021 - LTR16A LTR ERVL 0 450 369 593 296 22 6 chr4 36035714 36035893 -148252769 - LTR16A LTR ERVL -96 354 173 420 325 58 19 chr4 36035985 36036174 -148252488 - MLT1J2 LTR MaLR 0 450 254 633 238 34 0 chr4 36036174 36036321 -148252341 + MER3 DNA MER1_type 1 152 -57 205 200 0 22 chr4 36036331 36036376 -148252286 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 732 210 24 63 chr4 36036392 36036597 -148252065 - MLT1J1 LTR MaLR -241 205 9 928 169 22 0 chr4 36036629 36036813 -148251849 - L1MA10 LINE L1 -7 6327 6140 211 104 42 0 chr4 36036813 36036861 -148251801 + (TA)n Simple_repeat Simple_repeat 1 50 0 503 175 50 25 chr4 36036863 36036983 -148251679 - L1MA10 LINE L1 -192 5976 5854 1903 191 73 35 chr4 36037053 36037504 -148251158 + MLT1D LTR MaLR 31 498 -7 322 113 0 19 chr4 36037628 36037681 -148250981 - MLT2A2 LTR ERVL -2 451 400 211 86 0 99 chr4 36037682 36037763 -148250899 + (TA)n Simple_repeat Simple_repeat 2 74 0 967 140 57 0 chr4 36037763 36037920 -148250742 - MLT2A2 LTR ERVL -40 413 248 482 318 178 17 chr4 36037931 36038286 -148250376 + L2 LINE L2 1269 1680 -1634 32 57 0 0 chr4 36038619 36038672 -148249990 + AT_rich Low_complexity Low_complexity 1 53 0 613 246 58 77 chr4 36039355 36039451 -148249211 - MIR SINE MIR 0 262 166 903 231 59 0 chr4 36039451 36039654 -148249008 - MER20 DNA MER1_type -1 218 4 613 246 58 77 chr4 36039654 36039817 -148248845 - MIR SINE MIR -96 166 8 563 282 35 59 chr4 36040279 36040481 -148248181 + MIR SINE MIR 2 198 -64 21 0 0 0 chr4 36040499 36040520 -148248142 + AT_rich Low_complexity Low_complexity 1 21 0 655 200 6 6 chr4 36040520 36040700 -148247962 + (TA)n Simple_repeat Simple_repeat 1 180 0 305 280 11 11 chr4 36040708 36040801 -148247861 + L1MC4 LINE L1 6614 6706 -1336 205 300 14 0 chr4 36040861 36040931 -148247731 + (TA)n Simple_repeat Simple_repeat 2 72 0 9499 94 4 6 chr4 36041157 36042535 -148246127 + L1P LINE L1 4016 5391 -755 1849 298 152 36 chr4 36042641 36043763 -148244899 + L2 LINE L2 1544 2796 -518 1600 236 43 9 chr4 36043805 36044245 -148244417 + L1 LINE L1 4102 4556 -1590 1198 195 37 142 chr4 36044245 36044702 -148243960 - MLT2B1 LTR ERVL 0 414 6 316 170 19 113 chr4 36044706 36044804 -148243858 + L1 LINE L1 4551 4640 -1506 759 142 57 0 chr4 36044804 36044945 -148243717 + L1MB3 LINE L1 6034 6182 -1 254 341 37 0 chr4 36045010 36045092 -148243570 + L2 LINE L2 2893 2977 -336 * 605 288 26 31 chr4 36045087 36045316 -148243346 + L2 LINE L2 3084 3311 -2 2181 112 48 31 chr4 36047069 36047427 -148241235 - THE1B LTR MaLR 0 364 1 3968 166 13 28 chr4 36047510 36048064 -148240598 + Tigger2 DNA MER2_type 2 544 -2174 1950 134 0 32 chr4 36048064 36048378 -148240284 - AluSg SINE Alu 0 310 7 3968 166 13 28 chr4 36048378 36048577 -148240085 + Tigger2 DNA MER2_type 544 744 -1974 1649 147 12 0 chr4 36048636 36048894 -148239768 + Tigger2 DNA MER2_type 2458 2718 0 303 28 0 0 chr4 36049080 36049116 -148239546 + (TC)n Simple_repeat Simple_repeat 1 36 0 1621 188 10 0 chr4 36049117 36049405 -148239257 - AluJo SINE Alu -21 291 1 339 25 0 0 chr4 36050937 36050977 -148237685 + (CA)n Simple_repeat Simple_repeat 2 41 0 1946 179 34 3 chr4 36050979 36051330 -148237332 - MLT1A1 LTR MaLR -3 362 1 239 186 31 21 chr4 36051338 36051435 -148237227 + (TATAA)n Simple_repeat Simple_repeat 5 102 0 234 186 0 0 chr4 36051441 36051484 -148237178 - L1MC4 LINE L1 -1342 6700 6658 243 204 19 19 chr4 36051484 36051538 -148237124 + Tigger5 DNA MER2_type 2 55 -2268 547 194 11 0 chr4 36051542 36051635 -148237027 + Tigger5 DNA MER2_type 2230 2323 0 33 25 0 0 chr4 36052233 36052273 -148236389 + AT_rich Low_complexity Low_complexity 1 40 0 2262 101 0 0 chr4 36052621 36052929 -148235733 + AluSq SINE Alu 1 308 -5 31 0 0 0 chr4 36054063 36054094 -148234568 + AT_rich Low_complexity Low_complexity 1 31 0 247 386 124 13 chr4 36055534 36055687 -148232975 - MIR3 SINE MIR -9 199 30 22 0 0 0 chr4 36055723 36055745 -148232917 + AT_rich Low_complexity Low_complexity 1 22 0 4175 163 65 48 chr4 36056198 36057083 -148231579 - MER4D LTR ERV1 0 903 3 2595 151 27 0 chr4 36057089 36057501 -148231161 - MSTA LTR MaLR 0 428 6 992 175 9 33 chr4 36058306 36058517 -148230145 - MLT2C1 LTR ERVL -191 206 1 1150 211 0 30 chr4 36060357 36060594 -148228068 - AluJb SINE Alu -1 311 82 5214 257 35 30 chr4 36062133 36062170 -148226492 + L1MB7 LINE L1 1 36 -6506 2203 88 0 0 chr4 36062170 36062496 -148226166 + AluY SINE Alu 1 326 0 5214 257 35 30 chr4 36062496 36064121 -148224541 + L1MB7 LINE L1 36 1673 -4869 1053 269 10 46 chr4 36064247 36064637 -148224025 + L1MB7 LINE L1 1719 2094 -4552 5644 219 64 73 chr4 36064744 36066372 -148222290 + L1MB7 LINE L1 3240 4880 -1802 641 151 84 17 chr4 36066372 36066491 -148222171 + AluJb SINE Alu 4 130 -182 5644 219 64 73 chr4 36066491 36068204 -148220458 + L1MB7 LINE L1 4880 6667 -15 21 36 0 0 chr4 36068536 36068564 -148220098 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr4 36069982 36070008 -148218654 + AT_rich Low_complexity Low_complexity 1 26 0 276 215 139 0 chr4 36070454 36070533 -148218129 - MLT1B LTR MaLR -2 388 299 2103 193 76 70 chr4 36070883 36070922 -148217740 - MER92B LTR ERV1 0 636 599 464 95 27 0 chr4 36070922 36070996 -148217666 + MADE1 DNA Mariner 1 76 -4 2103 193 76 70 chr4 36070996 36071588 -148217074 - MER92B LTR ERV1 -37 599 1 25 0 0 0 chr4 36072129 36072154 -148216508 + AT_rich Low_complexity Low_complexity 1 25 0 2164 95 10 3 chr4 36072303 36072598 -148216064 - AluSx SINE Alu -15 297 1 334 232 62 45 chr4 36072796 36072908 -148215754 + MER58C DNA MER1_type 102 215 0 23 33 0 0 chr4 36074280 36074310 -148214352 + AT_rich Low_complexity Low_complexity 1 30 0 869 113 0 0 chr4 36074310 36074425 -148214237 - AluSc SINE Alu -23 286 172 193 340 191 14 chr4 36074547 36074688 -148213974 - MIR SINE MIR -79 183 18 805 264 204 16 chr4 36074766 36075134 -148213528 - LTR16B LTR ERVL -3 461 25 340 241 15 0 chr4 36075823 36075960 -148212702 + (TA)n Simple_repeat Simple_repeat 2 140 0 28 0 0 0 chr4 36076179 36076207 -148212455 + AT_rich Low_complexity Low_complexity 1 28 0 1685 152 32 0 chr4 36076207 36076516 -148212146 - L1MA5A LINE L1 -2 6295 5977 1549 283 36 29 chr4 36078913 36079461 -148209201 + L1MCb LINE L1 9 560 -5485 2085 214 39 81 chr4 36079585 36079707 -148208955 + L1MCb LINE L1 570 696 -5868 2275 145 107 5 chr4 36079707 36080101 -148208561 + MER61C LTR ERV1 1 434 0 2085 214 39 81 chr4 36080101 36080273 -148208389 + L1MCb LINE L1 696 874 -5690 2090 109 14 0 chr4 36080273 36080557 -148208105 + AluSx SINE Alu 21 308 -4 2085 214 39 81 chr4 36080557 36081482 -148207180 + L1MCb LINE L1 874 1757 -4807 * 4796 183 47 6 chr4 36081451 36082529 -148206133 + L1MA7 LINE L1 5577 6698 -11 1519 241 54 22 chr4 36082528 36083225 -148205437 + L1MCb LINE L1 2044 2617 -3947 * 5728 215 55 13 chr4 36083225 36083350 -148205312 + L1MC3 LINE L1 6298 6416 -1369 2196 107 3 31 chr4 36083350 36083669 -148204993 + AluSq SINE Alu 1 310 -3 5728 215 55 13 chr4 36083669 36084969 -148203693 + L1MC3 LINE L1 6416 7783 -2 1721 154 55 0 chr4 36084981 36085274 -148203388 + AluSx SINE Alu 1 309 -3 24 53 0 0 chr4 36085332 36085370 -148203292 + AT_rich Low_complexity Low_complexity 1 38 0 2779 166 18 28 chr4 36085592 36086201 -148202461 + pTR5 LTR ERV1 743 1345 -1093 3897 135 19 130 chr4 36086216 36087140 -148201522 + LTR12 LTR ERV1 5 826 0 1921 130 13 3 chr4 36087230 36087529 -148201133 - AluSc SINE Alu -7 302 1 325 157 0 119 chr4 36087532 36087650 -148201012 - MSTB LTR MaLR -330 98 3 24 0 0 0 chr4 36087692 36087716 -148200946 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr4 36088530 36088556 -148200106 + AT_rich Low_complexity Low_complexity 1 26 0 266 270 0 0 chr4 36088865 36088939 -148199723 + Charlie8 DNA MER1_type 71 144 -2273 2668 91 12 61 chr4 36088958 36089066 -148199596 + MER48 LTR ERV1 1 113 -274 2079 29 0 0 chr4 36089066 36089312 -148199350 + L1PA5 LINE L1 5909 6154 0 2668 91 12 61 chr4 36089312 36089610 -148199052 + MER48 LTR ERV1 113 387 0 36 23 0 0 chr4 36091027 36091070 -148197592 + AT_rich Low_complexity Low_complexity 1 43 0 307 344 23 23 chr4 36091423 36091551 -148197111 - L2 LINE L2 -5 3308 3181 427 232 96 57 chr4 36091630 36091807 -148196855 + MER63A DNA MER1_type 27 210 0 235 342 38 44 chr4 36091817 36091975 -148196687 - L2 LINE L2 -181 3091 2935 354 268 147 42 chr4 36093910 36094100 -148194562 - HAL1 LINE L1 -2 2505 2296 511 272 168 3 chr4 36094196 36094494 -148194168 - HAL1 LINE L1 -125 2382 2036 651 164 9 0 chr4 36094591 36094701 -148193961 - FLAM_A SINE Alu -20 122 12 750 222 76 0 chr4 36094770 36094968 -148193694 - HAL1 LINE L1 -726 1781 1569 21 0 0 0 chr4 36095262 36095283 -148193379 + AT_rich Low_complexity Low_complexity 1 21 0 3350 221 48 33 chr4 36095856 36097439 -148191223 - L1MB7 LINE L1 -6 6178 4564 1725 193 13 50 chr4 36097439 36097818 -148190844 + MLT1A1 LTR MaLR 1 365 0 3350 221 48 33 chr4 36097818 36098227 -148190435 - L1MB7 LINE L1 -1620 4564 4163 2865 127 16 2 chr4 36098248 36098698 -148189964 + Tigger4(Zombi) DNA MER2_type 2275 2730 -1 1315 263 113 60 chr4 36098799 36099014 -148189648 - L1MB7 LINE L1 -2085 4061 3859 378 0 0 0 chr4 36099014 36099056 -148189606 + (TG)n Simple_repeat Simple_repeat 2 43 0 1315 263 113 60 chr4 36099056 36099470 -148189192 - L1MB7 LINE L1 -2287 3859 3469 2187 164 33 28 chr4 36099470 36099896 -148188766 + MSTA LTR MaLR 1 428 0 1315 263 113 60 chr4 36099896 36099927 -148188735 - L1MB7 LINE L1 -2677 3469 3441 1565 146 20 20 chr4 36099927 36100173 -148188489 - AluSx SINE Alu -66 246 1 1315 263 113 60 chr4 36100173 36100465 -148188197 - L1MB7 LINE L1 -2705 3441 3056 1530 179 20 43 chr4 36100499 36100845 -148187817 + MER44D DNA MER2_type 1 608 -1 422 232 12 0 chr4 36100852 36100951 -148187711 - MIR SINE MIR -67 141 50 22 35 0 0 chr4 36101962 36101991 -148186671 + AT_rich Low_complexity Low_complexity 1 29 0 1637 112 12 0 chr4 36102220 36102479 -148186183 + L1MA5A LINE L1 6036 6297 0 1108 267 44 60 chr4 36102671 36102881 -148185781 - L2 LINE L2 -261 3052 2840 1529 176 52 144 chr4 36102881 36103479 -148185183 + MER67A LTR ERV1 1 543 0 1108 267 44 60 chr4 36103479 36103816 -148184846 - L2 LINE L2 -473 2840 2502 297 0 0 0 chr4 36104456 36104489 -148184173 + (TCCA)n Simple_repeat Simple_repeat 4 36 0 263 386 0 0 chr4 36104832 36104933 -148183729 + MIR SINE MIR 46 146 -62 224 220 22 132 chr4 36105300 36105391 -148183271 - L2 LINE L2 -18 3254 3174 30 0 0 0 chr4 36105815 36105845 -148182817 + AT_rich Low_complexity Low_complexity 1 30 0 733 266 43 96 chr4 36106348 36106815 -148181847 + LTR16A1 LTR ERVL 16 457 0 191 341 0 12 chr4 36107287 36107372 -148181290 + L3 LINE CR1 919 1002 -575 210 292 69 0 chr4 36107486 36107558 -148181104 + L3 LINE CR1 1197 1273 -304 1496 213 155 12 chr4 36107670 36107916 -148180746 + MLT1D LTR MaLR 6 215 -290 2110 99 7 3 chr4 36107916 36108244 -148180418 + AluSp SINE Alu 1 329 0 1496 213 155 12 chr4 36108244 36108428 -148180234 + MLT1D LTR MaLR 215 499 -6 4145 99 9 3 chr4 36108513 36109097 -148179565 - LTR8 LTR ERV1 -104 587 1 8788 85 17 23 chr4 36109097 36109782 -148178880 - HUERS-P1 LTR ERV1 0 6263 5575 3598 115 0 6 chr4 36109782 36110296 -148178366 + MER9 LTR ERVK 1 511 0 8788 85 17 23 chr4 36110296 36111594 -148177068 - HUERS-P1 LTR ERV1 -688 5575 4138 * 18128 96 27 43 chr4 36111584 36114371 -148174291 - HUERS-P1 LTR ERV1 -3522 2741 1 1071 90 14 0 chr4 36114371 36114515 -148174147 - LTR8 LTR ERV1 0 691 546 496 255 90 55 chr4 36114653 36115090 -148173572 + MER113 DNA MER1_type? 37 521 0 332 343 99 22 chr4 36115090 36115271 -148173391 + MIR SINE MIR 9 203 -59 283 275 99 0 chr4 36115442 36115533 -148173129 + L2 LINE L2 3190 3289 -24 1200 203 12 111 chr4 36115587 36115992 -148172670 - MLT1A1 LTR MaLR 0 365 1 1180 251 10 7 chr4 36116229 36116520 -148172142 - MER58B DNA MER1_type 0 341 50 1748 238 33 6 chr4 36116525 36117043 -148171619 - L1PB4 LINE L1 -813 5333 4802 * 2592 138 9 7 chr4 36117040 36117468 -148171194 + L1PB4 LINE L1 5345 5773 -383 191 0 75 25 chr4 36117475 36117515 -148171147 + (TA)n Simple_repeat Simple_repeat 2 43 0 370 135 71 35 chr4 36117550 36117720 -148170942 + (TA)n Simple_repeat Simple_repeat 2 177 0 225 229 0 49 chr4 36117749 36117810 -148170852 - L1PB4 LINE L1 -195 5961 5904 266 214 14 14 chr4 36117810 36117880 -148170782 + (TA)n Simple_repeat Simple_repeat 2 71 0 246 32 0 0 chr4 36117880 36117911 -148170751 + (CA)n Simple_repeat Simple_repeat 2 32 0 2025 160 20 0 chr4 36117911 36118267 -148170395 + L1PB4 LINE L1 5794 6156 0 293 355 89 23 chr4 36118267 36118481 -148170181 + L2 LINE L2 3039 3266 -47 242 345 9 35 chr4 36118847 36118963 -148169699 - MIR SINE MIR -106 156 44 279 349 53 12 chr4 36120123 36120292 -148168370 - MIR SINE MIR -85 177 2 556 51 0 0 chr4 36121075 36121153 -148167509 + L1PA2 LINE L1 6078 6155 0 1709 157 110 28 chr4 36122108 36122472 -148166190 - L1PA16 LINE L1 -1 6165 5772 * 4043 103 32 2 chr4 36122441 36123033 -148165629 - THE1B-int LTR MaLR -970 610 1 2088 144 19 32 chr4 36123033 36123402 -148165260 - THE1B LTR MaLR 0 364 1 751 140 77 0 chr4 36123402 36123545 -148165117 + L1P4 LINE L1 5331 5484 -682 * 2197 132 0 0 chr4 36123540 36123851 -148164811 - THE1-int LTR MaLR -836 744 434 * 5885 113 22 14 chr4 36123838 36124699 -148163963 + THE1B-int LTR MaLR 713 1580 0 1911 113 107 27 chr4 36124706 36125043 -148163619 + THE1B LTR MaLR 1 364 0 3985 234 24 14 chr4 36125043 36126200 -148162462 - L1PA16 LINE L1 -811 5335 4171 21 0 0 0 chr4 36127658 36127679 -148160983 + AT_rich Low_complexity Low_complexity 1 21 0 1562 219 34 11 chr4 36127735 36128092 -148160570 - MLT1A1 LTR MaLR 0 365 1 1833 186 20 9 chr4 36128147 36128491 -148160171 + MER7A DNA MER2_type 1 346 0 209 263 76 82 chr4 36128814 36128985 -148159677 + MIR SINE MIR 72 241 -21 396 322 51 23 chr4 36129130 36129344 -148159318 + MLT1I LTR MaLR 1 220 -189 336 289 18 9 chr4 36129380 36129494 -148159168 + MLT1I LTR MaLR 295 409 0 800 238 84 116 chr4 36130469 36130738 -148157924 + HsTC2a DNA Tc2 32 285 -1615 2163 120 3 3 chr4 36130738 36131047 -148157615 + AluSg SINE Alu 1 309 -1 800 238 84 116 chr4 36131047 36131181 -148157481 + HsTC2a DNA Tc2 285 422 -322 1259 107 48 21 chr4 36131225 36131412 -148157250 + AluSg SINE Alu 3 194 -116 574 266 67 39 chr4 36131437 36131719 -148156943 + HsTC2a DNA Tc2 449 738 -4 1703 148 4 14 chr4 36132037 36132314 -148156348 - AluSx SINE Alu -22 290 17 211 309 59 0 chr4 36132323 36132391 -148156271 - L2 LINE L2 0 3272 3201 336 285 23 15 chr4 36132475 36132605 -148156057 - MER94 DNA DNA 0 134 4 317 308 26 27 chr4 36133388 36133582 -148155080 + L1MCa LINE L1 65 175 -5870 5985 203 116 24 chr4 36133643 36135388 -148153274 + L1MC3 LINE L1 5219 7125 -660 22 99 0 0 chr4 36136564 36136635 -148152027 + AT_rich Low_complexity Low_complexity 1 71 0 25 0 0 0 chr4 36136679 36136704 -148151958 + AT_rich Low_complexity Low_complexity 1 25 0 1166 248 19 13 chr4 36137192 36137510 -148151152 + L1MD3 LINE L1 7674 7993 -2 23 54 0 0 chr4 36137842 36137879 -148150783 + AT_rich Low_complexity Low_complexity 1 37 0 22 94 0 0 chr4 36138066 36138130 -148150532 + AT_rich Low_complexity Low_complexity 1 64 0 3684 34 0 0 chr4 36138301 36138742 -148149920 - L1P LINE L1 -1045 5101 4661 1544 268 144 21 chr4 36138760 36138996 -148149666 + Charlie7 DNA MER1_type 1078 1283 -1329 2324 129 5 24 chr4 36138996 36139367 -148149295 - THE1B LTR MaLR 0 364 1 1544 268 144 21 chr4 36139367 36140051 -148148611 + Charlie7 DNA MER1_type 1283 2112 -500 3946 178 36 54 chr4 36140063 36140214 -148148448 + L1MB3 LINE L1 5181 5333 -850 1529 183 38 21 chr4 36140214 36140504 -148148158 + AluJo SINE Alu 1 295 -17 3946 178 36 54 chr4 36140504 36141366 -148147296 + L1MB3 LINE L1 5333 6182 -1 275 314 33 0 chr4 36141411 36141532 -148147130 + Charlie7 DNA MER1_type 2200 2324 -288 335 209 29 35 chr4 36141635 36141807 -148146855 + (TA)n Simple_repeat Simple_repeat 1 171 0 1479 210 47 3 chr4 36142092 36142435 -148146227 - MER46B DNA MER2_type -3 233 1 3028 307 89 38 chr4 36142533 36142949 -148145713 + L2 LINE L2 1264 1657 -1656 2129 92 0 0 chr4 36142949 36143232 -148145430 + AluY SINE Alu 21 303 -8 3028 307 89 38 chr4 36143232 36144008 -148144654 + L2 LINE L2 1657 2392 -921 2064 99 3 10 chr4 36144008 36144302 -148144360 + AluSc SINE Alu 1 292 -17 3028 307 89 38 chr4 36144302 36145007 -148143655 + L2 LINE L2 2392 3313 0 5063 78 0 3 chr4 36146154 36146825 -148141837 - L1PA7 LINE L1 -6 6148 5480 238 224 0 0 chr4 36148242 36148291 -148140371 + (TA)n Simple_repeat Simple_repeat 2 50 0 3129 70 27 27 chr4 36148386 36148783 -148139879 + MLT2A1 LTR ERVL 3 402 -42 216 0 0 0 chr4 36148783 36148807 -148139855 + (CA)n Simple_repeat Simple_repeat 2 25 0 3129 70 27 27 chr4 36148807 36148851 -148139811 + MLT2A1 LTR ERVL 401 444 0 41347 80 7 2 chr4 36148851 36154205 -148134457 + HERVL-A1 LTR ERVL 1 5378 -276 1369 226 35 46 chr4 36154309 36154681 -148133981 + MLT1B LTR MaLR 21 388 -2 180 0 0 0 chr4 36155206 36155226 -148133436 + (TG)n Simple_repeat Simple_repeat 2 21 0 2198 107 3 10 chr4 36155518 36155817 -148132845 + AluSp SINE Alu 2 298 -15 21 36 0 0 chr4 36157233 36157261 -148131401 + AT_rich Low_complexity Low_complexity 1 28 0 775 133 70 0 chr4 36157359 36157502 -148131160 + MLT1B LTR MaLR 1 153 -237 565 179 49 154 chr4 36157496 36157742 -148130920 + MLT1B LTR MaLR 70 289 -101 * 881 323 77 35 chr4 36157731 36157905 -148130757 + MER45C DNA AcHobo 93 258 -695 4775 92 12 1 chr4 36157905 36158565 -148130097 - PABL_B LTR ERV1 0 667 1 881 323 77 35 chr4 36158565 36158925 -148129737 + MER45C DNA AcHobo 258 649 -304 269 324 10 20 chr4 36158978 36159080 -148129582 - MLT1I LTR MaLR -287 122 22 3783 138 19 3 chr4 36159083 36159708 -148128954 - MER41B LTR ERV1 0 635 1 848 266 78 20 chr4 36159909 36160153 -148128509 + Charlie1a DNA MER1_type 5 262 -1193 1546 192 135 83 chr4 36160206 36160792 -148127870 + MER21B LTR ERV1 40 776 -155 180 0 0 0 chr4 36160793 36160813 -148127849 + (AATTG)n Simple_repeat Simple_repeat 2 21 0 1079 266 34 90 chr4 36160830 36161318 -148127344 + MSTD-int LTR MaLR 1027 1490 -161 998 192 89 24 chr4 36161427 36161749 -148126913 + MSTD LTR MaLR 1 396 0 374 216 95 0 chr4 36161749 36161823 -148126839 + MER21B LTR ERV1 735 815 -48 4303 216 44 22 chr4 36161861 36163009 -148125653 + Charlie1a DNA MER1_type 282 1454 -1 261 237 7 151 chr4 36163176 36163315 -148125347 - L2 LINE L2 -43 3270 3152 180 0 0 0 chr4 36163837 36163857 -148124805 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 210 167 24 0 chr4 36164138 36164180 -148124482 + (CA)n Simple_repeat Simple_repeat 2 44 0 2559 27 3 0 chr4 36164478 36164776 -148123886 + AluY SINE Alu 1 299 -12 680 333 91 25 chr4 36165111 36165553 -148123109 - L2 LINE L2 -38 3275 2805 225 319 55 55 chr4 36165561 36165743 -148122919 - L2 LINE L2 -402 2912 2731 22 35 0 0 chr4 36165922 36165951 -148122711 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 36166176 36166197 -148122465 + AT_rich Low_complexity Low_complexity 1 21 0 404 264 168 0 chr4 36167286 36167411 -148121251 - LTR67 LTR ERVL 0 557 412 1068 270 89 34 chr4 36167769 36168272 -148120390 + MLT1H LTR MaLR 12 542 -7 218 365 0 0 chr4 36169174 36169248 -148119414 + MIR SINE MIR 189 262 0 252 267 22 22 chr4 36169685 36169775 -148118887 + GA-rich Low_complexity Low_complexity 2 91 0 555 172 75 65 chr4 36169803 36169989 -148118673 - MER53 DNA DNA 0 189 2 225 348 11 0 chr4 36170155 36170247 -148118415 + L2 LINE L2 2305 2397 -917 * 409 287 102 92 chr4 36170221 36170524 -148118138 + L2 LINE L2 3006 3311 -2 205 371 37 71 chr4 36170521 36170901 -148117761 + L2 LINE L2 2362 2728 -586 * 243 125 0 0 chr4 36170953 36170993 -148117669 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 306 0 0 0 chr4 36171079 36171113 -148117549 + (TC)n Simple_repeat Simple_repeat 2 35 0 378 0 0 0 chr4 36171384 36171426 -148117236 + (TG)n Simple_repeat Simple_repeat 2 43 0 425 234 0 0 chr4 36171436 36171530 -148117132 + MER58 DNA MER1_type 27 120 -95 295 309 74 20 chr4 36171551 36171700 -148116962 - L1ME3A LINE L1 -287 5883 5727 484 250 47 16 chr4 36171917 36172045 -148116617 + L2 LINE L2 3182 3313 0 186 350 72 10 chr4 36172354 36172451 -148116211 + MIR3 SINE MIR 105 207 -1 2094 115 0 34 chr4 36172653 36172974 -148115688 + AluSg SINE Alu 1 310 0 25 0 0 0 chr4 36173055 36173080 -148115582 + AT_rich Low_complexity Low_complexity 1 25 0 1085 86 0 6 chr4 36173850 36174012 -148114650 + HERVL-A1 LTR ERVL 5494 5654 0 2962 92 50 2 chr4 36174012 36174395 -148114267 + MLT2A1 LTR ERVL 1 407 -37 300 91 0 0 chr4 36174395 36174439 -148114223 + (TA)n Simple_repeat Simple_repeat 2 45 0 2962 92 50 2 chr4 36174439 36174479 -148114183 + MLT2A1 LTR ERVL 407 444 0 187 53 26 53 chr4 36174863 36174901 -148113761 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 2283 109 39 25 chr4 36176549 36176908 -148111754 - THE1B LTR MaLR 0 364 1 1058 232 5 14 chr4 36177795 36178015 -148110647 + MER58A DNA MER1_type 1 218 -6 4517 178 25 5 chr4 36178431 36179296 -148109366 - L1MC1 LINE L1 0 6333 5451 265 256 171 0 chr4 36179460 36179542 -148109120 + L2 LINE L2 3177 3272 0 2376 81 0 0 chr4 36180725 36181022 -148107640 - AluY SINE Alu -14 297 1 22 0 0 0 chr4 36182864 36182886 -148105776 + AT_rich Low_complexity Low_complexity 1 22 0 24 85 0 0 chr4 36183012 36183071 -148105591 + AT_rich Low_complexity Low_complexity 1 59 0 1279 131 39 9 chr4 36183240 36183529 -148105133 + THE1B LTR MaLR 1 364 0 646 161 51 106 chr4 36183606 36183807 -148104855 - MLT2D LTR ERVL 0 414 213 1319 328 100 47 chr4 36184223 36185075 -148103587 + L2 LINE L2 97 993 -2321 1047 305 41 26 chr4 36185116 36185578 -148103084 + L2 LINE L2 1893 2361 -953 2213 57 0 0 chr4 36185613 36186009 -148102653 + L1P3 LINE L1 5092 5487 -667 386 39 19 0 chr4 36187082 36187134 -148101528 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 1297 188 4 47 chr4 36187141 36187418 -148101244 - AluJo SINE Alu -37 275 11 1756 37 0 0 chr4 36188099 36188313 -148100349 - L1PA4 LINE L1 -8 6147 5934 3694 206 43 13 chr4 36188566 36189240 -148099422 + L1M4 LINE L1 7 708 -5676 260 0 57 0 chr4 36189240 36189275 -148099387 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 3694 206 43 13 chr4 36189275 36189365 -148099297 + L1M4 LINE L1 708 794 -5590 5208 62 3 9 chr4 36189380 36190060 -148098602 - L1PA8 LINE L1 -9 6163 5488 1114 207 93 23 chr4 36190063 36190459 -148098203 + L1M4 LINE L1 5196 5619 -763 222 118 0 0 chr4 36192106 36192140 -148096522 + (AATTG)n Simple_repeat Simple_repeat 4 37 0 2178 72 36 0 chr4 36192433 36192710 -148095952 - AluSg SINE Alu -23 287 1 329 290 55 64 chr4 36193355 36193669 -148094993 - L1MEd LINE L1 -2525 3604 3266 249 346 4 26 chr4 36193684 36193912 -148094750 - L1MEd LINE L1 -4972 1147 925 453 214 58 0 chr4 36196214 36196317 -148092345 - MIR SINE MIR 0 262 154 256 327 53 44 chr4 36197016 36197129 -148091533 + MIR SINE MIR 1 114 -148 4087 182 19 24 chr4 36197710 36198507 -148090155 - MER54B LTR ERVL 0 793 1 2341 64 0 0 chr4 36198855 36199162 -148089500 - AluSg SINE Alu 0 307 1 353 276 31 49 chr4 36201760 36201923 -148086739 + L2 LINE L2 3149 3308 -5 327 292 84 32 chr4 36202781 36202935 -148085727 - MIR SINE MIR -1 261 100 * 631 301 45 29 chr4 36202930 36203176 -148085486 - MIR SINE MIR 0 262 13 543 292 107 23 chr4 36203217 36203433 -148085229 + MIR SINE MIR 29 262 0 1606 221 43 2 chr4 36204411 36204805 -148083857 - L1PA16 LINE L1 -861 5285 4876 4955 149 29 5 chr4 36204805 36205657 -148083005 + L1PA16 LINE L1 5283 6155 -11 2108 116 0 3 chr4 36207029 36207322 -148081340 + AluSq SINE Alu 5 296 -17 31 0 0 0 chr4 36207325 36207356 -148081306 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr4 36207412 36207438 -148081224 + AT_rich Low_complexity Low_complexity 1 26 0 1039 214 29 0 chr4 36207485 36207691 -148080971 - MER58A DNA MER1_type -12 212 1 1278 137 5 15 chr4 36209325 36209530 -148079132 + AluSx SINE Alu 5 207 -105 711 220 47 0 chr4 36209586 36209736 -148078926 - FRAM SINE Alu -27 149 1 368 289 40 112 chr4 36210221 36210293 -148078369 - MIR SINE MIR -1 261 185 1407 279 98 28 chr4 36210293 36210902 -148077760 + MLT1E1 LTR MaLR 3 654 0 368 289 40 112 chr4 36210902 36211106 -148077556 - MIR SINE MIR -77 185 5 346 361 47 12 chr4 36211114 36211283 -148077379 - MIR SINE MIR -70 192 18 23 0 0 0 chr4 36211803 36211826 -148076836 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr4 36214455 36214490 -148074172 + AT_rich Low_complexity Low_complexity 1 35 0 736 297 92 60 chr4 36214502 36214708 -148073954 - L2 LINE L2 -7 3306 3108 369 0 0 0 chr4 36214708 36214749 -148073913 + (TA)n Simple_repeat Simple_repeat 1 41 0 736 297 92 60 chr4 36214749 36214996 -148073666 - L2 LINE L2 -205 3108 2838 211 244 50 92 chr4 36215085 36215143 -148073519 - MIR SINE MIR -74 188 136 710 235 105 10 chr4 36215143 36215343 -148073319 - MER20 DNA MER1_type 0 219 1 211 244 50 92 chr4 36215343 36215403 -148073259 - MIR SINE MIR -126 136 75 2170 83 17 3 chr4 36215741 36216043 -148072619 - L1P4 LINE L1 -493 5673 5368 2155 130 49 47 chr4 36216047 36216454 -148072208 + L1PA16 LINE L1 5750 6157 -9 1944 144 3 3 chr4 36217711 36218016 -148070646 - AluSq SINE Alu 0 305 1 1773 194 5 22 chr4 36219409 36219780 -148068882 + MLT1A1 LTR MaLR 1 365 0 1189 240 50 36 chr4 36220114 36220498 -148068164 + MLT1B LTR MaLR 1 389 -1 195 376 43 0 chr4 36220599 36220692 -148067970 + MIR3 SINE MIR 81 177 -31 872 251 106 52 chr4 36220841 36221284 -148067378 - MLT1C LTR MaLR 0 467 1 23 0 0 0 chr4 36221450 36221473 -148067189 + AT_rich Low_complexity Low_complexity 1 23 0 2439 180 4 51 chr4 36221954 36222448 -148066214 + Tigger3b DNA MER2_type 2 472 -759 604 82 63 6 chr4 36222476 36222634 -148066028 + (TA)n Simple_repeat Simple_repeat 2 168 0 3224 169 88 9 chr4 36222662 36223347 -148065315 + Tigger3b DNA MER2_type 493 1231 0 21 71 0 0 chr4 36223619 36223661 -148065001 + AT_rich Low_complexity Low_complexity 1 42 0 24 32 0 0 chr4 36223740 36223771 -148064891 + AT_rich Low_complexity Low_complexity 1 31 0 1020 230 50 76 chr4 36224123 36224505 -148064157 - MLT1B LTR MaLR -2 386 1 1947 147 7 3 chr4 36224698 36225005 -148063657 + AluSx SINE Alu 3 310 -2 182 306 71 24 chr4 36225196 36225281 -148063381 + MIR SINE MIR 92 180 -82 2187 98 0 0 chr4 36225670 36225965 -148062697 + AluSc SINE Alu 1 295 -14 186 43 0 0 chr4 36226316 36226339 -148062323 + (TA)n Simple_repeat Simple_repeat 2 24 0 489 115 26 0 chr4 36226782 36226860 -148061802 + MADE1 DNA Mariner 1 80 0 251 399 21 7 chr4 36226985 36227128 -148061534 - MIR SINE MIR -105 157 13 464 277 28 23 chr4 36228882 36229059 -148059603 - MER5B DNA MER1_type 0 178 1 193 282 81 60 chr4 36229259 36229408 -148059254 + L2 LINE L2 3147 3298 -15 23 0 0 0 chr4 36229940 36229963 -148058699 + AT_rich Low_complexity Low_complexity 1 23 0 269 326 58 77 chr4 36230045 36230306 -148058356 - MIR SINE MIR -2 260 5 2145 168 33 2 chr4 36230360 36230758 -148057904 - MSTB LTR MaLR -2 424 15 541 236 220 16 chr4 36231289 36231471 -148057191 + MER20 DNA MER1_type 1 219 0 996 158 18 0 chr4 36232517 36232861 -148055801 - AluSx SINE Alu 0 490 144 947 114 23 0 chr4 36232914 36233045 -148055617 - AluSx SINE Alu -176 137 4 335 296 179 25 chr4 36233292 36233488 -148055174 - L1ME LINE L1 -296 5825 5600 25 75 0 0 chr4 36233703 36233756 -148054906 + AT_rich Low_complexity Low_complexity 1 53 0 295 345 144 40 chr4 36233812 36234166 -148054496 - L2 LINE L2 0 3313 2923 766 231 9 38 chr4 36234898 36235110 -148053552 + MER63A DNA MER1_type 4 209 -1 27 29 0 0 chr4 36236007 36236041 -148052621 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr4 36236230 36236252 -148052410 + AT_rich Low_complexity Low_complexity 1 22 0 436 178 11 33 chr4 36236631 36236721 -148051941 - Charlie1 DNA MER1_type -1253 1508 1421 300 329 0 0 chr4 36236729 36236805 -148051857 - Charlie1 DNA MER1_type -2683 78 3 993 321 46 32 chr4 36236807 36237313 -148051349 + L2 LINE L2 2793 3304 -9 335 263 34 76 chr4 36237344 36237426 -148051236 - HAL1 LINE L1 -1493 1014 930 1989 127 3 0 chr4 36237426 36237739 -148050923 - AluSx SINE Alu 0 314 1 335 263 34 76 chr4 36237739 36237917 -148050745 - HAL1 LINE L1 -1577 930 764 1765 174 30 66 chr4 36238006 36238542 -148050120 + MLT2A2 LTR ERVL 1 418 -35 2055 110 10 0 chr4 36238542 36238832 -148049830 - AluY SINE Alu -18 293 1 1765 174 30 66 chr4 36238832 36238867 -148049795 + MLT2A2 LTR ERVL 418 453 0 885 252 32 9 chr4 36238971 36239189 -148049473 + MER58A DNA MER1_type 1 223 -1 26 50 0 0 chr4 36239687 36239727 -148048935 + AT_rich Low_complexity Low_complexity 1 40 0 27 81 0 0 chr4 36240115 36240177 -148048485 + AT_rich Low_complexity Low_complexity 1 62 0 548 231 22 8 chr4 36240220 36240354 -148048308 + MLT1D LTR MaLR 3 138 -367 357 343 70 0 chr4 36240451 36240623 -148048039 + L1ME3A LINE L1 5147 5330 -816 1301 320 60 17 chr4 36240692 36241008 -148047654 + L1ME3A LINE L1 5432 5733 -437 333 0 0 0 chr4 36241008 36241045 -148047617 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 1301 320 60 17 chr4 36241045 36241432 -148047230 + L1ME3A LINE L1 5733 6165 -5 1161 193 24 60 chr4 36242188 36242626 -148046036 - MLT1D LTR MaLR 0 505 1 1907 184 33 32 chr4 36243099 36243650 -148045012 - MLT2A2 LTR ERVL 0 554 3 1004 205 56 14 chr4 36243694 36243988 -148044674 + LTR24B LTR ERV1 231 467 0 789 304 26 11 chr4 36243988 36244254 -148044408 + LTR24B-int LTR ERV1 1 270 -4853 792 322 54 37 chr4 36246541 36246969 -148041693 + MER84-int LTR ERV1 149 583 -4064 352 323 42 39 chr4 36247531 36247862 -148040800 + MER84-int LTR ERV1 3314 3645 -3156 310 336 18 27 chr4 36247891 36248114 -148040548 + MER84-int LTR ERV1 4718 4938 -3797 1692 173 4 0 chr4 36249583 36249860 -148038802 + AluSx SINE Alu 30 307 -5 337 258 96 22 chr4 36250790 36250968 -148037694 + MER84-int LTR ERV1 4265 4455 -499 892 238 47 55 chr4 36251486 36251871 -148036791 + LTR24B LTR ERV1 188 467 0 1951 223 101 94 chr4 36252242 36253236 -148035426 - MER4-int LTR ERV1 -1006 5592 2522 273 276 32 73 chr4 36253239 36253362 -148035300 - MER52A LTR ERV1 -4 1751 1634 954 270 94 97 chr4 36253383 36254194 -148034468 - MER52A LTR ERV1 -296 1459 652 930 185 51 65 chr4 36254195 36254276 -148034386 - MER4-int LTR ERV1 -2224 4021 3940 198 0 0 0 chr4 36254276 36254298 -148034364 + (CAA)n Simple_repeat Simple_repeat 2 23 0 930 185 51 65 chr4 36254298 36254555 -148034107 - MER4-int LTR ERV1 -2305 3940 2477 317 225 0 56 chr4 36254627 36254716 -148033946 - MER4-int LTR ERV1 -2868 3730 3647 323 275 42 97 chr4 36254817 36255148 -148033514 - MER4-int LTR ERV1 -2572 2551 2239 * 367 204 132 24 chr4 36255141 36255308 -148033354 - MER4-int LTR ERV1 -6377 1743 1559 507 128 20 39 chr4 36255405 36255507 -148033155 + L1MA3 LINE L1 6206 6305 0 467 263 32 5 chr4 36255510 36255696 -148032966 - MER4-int LTR ERV1 -6590 1530 1340 1000 253 45 86 chr4 36255755 36256337 -148032325 - MER4-int LTR ERV1 -2751 2120 1563 736 235 137 35 chr4 36256358 36256643 -148032019 - MER34 LTR ERV1 -195 347 34 315 236 8 126 chr4 36256940 36257067 -148031595 - MER4-int LTR ERV1 -4048 823 712 548 240 31 106 chr4 36257189 36257443 -148031219 - MER4-int LTR ERV1 -4583 288 54 209 264 45 32 chr4 36257980 36258135 -148030527 + (TATATG)n Simple_repeat Simple_repeat 4 160 0 219 266 0 0 chr4 36259493 36259557 -148029105 + CT-rich Low_complexity Low_complexity 4 67 0 1762 171 4 4 chr4 36259725 36260035 -148028627 - AluJb SINE Alu 0 310 1 314 164 0 14 chr4 36260496 36260551 -148028111 + CT-rich Low_complexity Low_complexity 1 56 -16 225 0 0 0 chr4 36260551 36260576 -148028086 + (CA)n Simple_repeat Simple_repeat 1 25 0 314 164 0 14 chr4 36260576 36260593 -148028069 + CT-rich Low_complexity Low_complexity 56 72 0 1230 85 11 17 chr4 36261938 36262115 -148026547 + AluY SINE Alu 136 311 0 236 294 0 24 chr4 36262228 36262313 -148026349 + L1MEc LINE L1 176 258 -6138 217 211 0 0 chr4 36262443 36262481 -148026181 - L3 LINE CR1 -156 1421 1384 2370 50 3 10 chr4 36262666 36262965 -148025697 + AluY SINE Alu 1 297 -14 250 316 95 30 chr4 36263236 36263404 -148025258 - L2 LINE L2 -2 3311 3133 288 308 0 0 chr4 36263795 36263873 -148024789 + CT-rich Low_complexity Low_complexity 2 79 0 268 350 21 21 chr4 36263879 36264022 -148024640 - MIR SINE MIR -71 191 49 1175 216 66 69 chr4 36265258 36265637 -148023025 + MLT1B LTR MaLR 1 378 -12 316 319 78 21 chr4 36266083 36266274 -148022388 + MIR SINE MIR 54 255 -7 285 376 56 11 chr4 36266752 36266930 -148021732 - MIR SINE MIR -57 205 20 24 67 0 0 chr4 36267163 36267208 -148021454 + AT_rich Low_complexity Low_complexity 1 45 0 308 98 0 0 chr4 36267837 36267878 -148020784 - MER53 DNA DNA 0 189 149 1600 188 25 53 chr4 36267894 36268293 -148020369 + MLT1B LTR MaLR 3 390 0 2127 123 0 0 chr4 36268534 36268827 -148019835 + AluSg SINE Alu 1 293 -17 333 280 34 0 chr4 36269039 36269157 -148019505 - L1ME4a LINE L1 -1 6120 5999 5987 99 6 1 chr4 36269198 36270044 -148018618 - L1PA8A LINE L1 -28 6103 5254 216 320 49 41 chr4 36270393 36270515 -148018147 + L2 LINE L2 3145 3267 -5 478 342 121 0 chr4 36270845 36271184 -148017478 + HsTC2 DNA Tc2 485 864 -1034 26 0 0 0 chr4 36271369 36271395 -148017267 + AT_rich Low_complexity Low_complexity 1 26 0 1682 186 3 0 chr4 36271416 36271711 -148016951 + AluJo SINE Alu 15 310 -2 333 68 0 0 chr4 36271720 36271764 -148016898 + (GGAA)n Simple_repeat Simple_repeat 4 47 0 186 291 36 0 chr4 36271823 36271878 -148016784 + MIR SINE MIR 74 130 -78 297 336 68 29 chr4 36272196 36272415 -148016247 - L1ME4a LINE L1 -224 5897 5654 2057 109 3 0 chr4 36272415 36272726 -148015936 - AluSp SINE Alu 0 312 1 297 336 68 29 chr4 36272726 36272889 -148015773 - L1ME4a LINE L1 -467 5654 5499 192 301 126 55 chr4 36273042 36273225 -148015437 + L2 LINE L2 2155 2350 -964 203 130 0 43 chr4 36273583 36273629 -148015033 + (TAAAAA)n Simple_repeat Simple_repeat 4 47 0 22 35 0 0 chr4 36273646 36273675 -148014987 + AT_rich Low_complexity Low_complexity 1 29 0 383 75 0 252 chr4 36274354 36274461 -148014201 - MADE1 DNA Mariner 0 80 1 26 0 0 0 chr4 36275352 36275378 -148013284 + AT_rich Low_complexity Low_complexity 1 26 0 3318 211 65 9 chr4 36275742 36276609 -148012053 + L1MB8 LINE L1 5256 6170 -8 25 0 0 0 chr4 36277143 36277168 -148011494 + AT_rich Low_complexity Low_complexity 1 25 0 24 96 0 0 chr4 36277703 36277776 -148010886 + AT_rich Low_complexity Low_complexity 1 73 0 520 330 87 42 chr4 36277886 36278289 -148010373 - HAL1 LINE L1 -868 1639 1219 332 317 81 34 chr4 36280292 36280762 -148007900 - L1ME3A LINE L1 -306 5864 5373 205 222 19 0 chr4 36280791 36280845 -148007817 + T-rich Low_complexity Low_complexity 4 58 0 22 56 0 0 chr4 36281935 36281971 -148006691 + AT_rich Low_complexity Low_complexity 1 36 0 258 32 0 0 chr4 36283045 36283076 -148005586 + (TG)n Simple_repeat Simple_repeat 1 31 0 183 42 0 0 chr4 36283863 36283887 -148004775 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 463 303 13 7 chr4 36284826 36284981 -148003681 - MLT1I LTR MaLR -253 156 1 1547 205 45 22 chr4 36285009 36285293 -148003369 + MLT1A1 LTR MaLR 1 296 -69 2202 116 7 0 chr4 36285293 36285603 -148003059 - AluSx SINE Alu 0 312 1 1547 205 45 22 chr4 36285603 36285674 -148002988 + MLT1A1 LTR MaLR 296 364 -1 1635 186 9 15 chr4 36285872 36286211 -148002451 + MER1B DNA MER1_type 1 337 0 874 304 80 26 chr4 36287366 36287754 -148000908 - MLT1I LTR MaLR 0 409 1 26 74 0 0 chr4 36288994 36289048 -147999614 + AT_rich Low_complexity Low_complexity 1 54 0 842 216 2 6 chr4 36289050 36289234 -147999428 + MER58B DNA MER1_type 37 340 -1 22 0 0 0 chr4 36289256 36289278 -147999384 + AT_rich Low_complexity Low_complexity 1 22 0 34 65 0 0 chr4 36289377 36289439 -147999223 + AT_rich Low_complexity Low_complexity 1 62 0 328 305 67 43 chr4 36289703 36289867 -147998795 + MIR SINE MIR 1 168 -94 282 29 0 0 chr4 36291105 36291140 -147997522 + (TG)n Simple_repeat Simple_repeat 1 35 0 1004 209 115 69 chr4 36291276 36291625 -147997037 - MLT1A1 LTR MaLR 0 365 1 2423 230 25 68 chr4 36291701 36292393 -147996269 + LTR8 LTR ERV1 30 691 0 301 301 28 75 chr4 36293114 36293300 -147995362 - MIR SINE MIR -14 248 73 1495 167 57 18 chr4 36294061 36294397 -147994265 + L1PA16 LINE L1 5816 6164 -2 32 26 0 0 chr4 36294415 36294454 -147994208 + AT_rich Low_complexity Low_complexity 1 39 0 222 315 0 0 chr4 36295057 36295111 -147993551 - MIR SINE MIR -182 80 27 23 0 0 0 chr4 36295415 36295438 -147993224 + AT_rich Low_complexity Low_complexity 1 23 0 32 31 0 46 chr4 36295804 36295869 -147992793 + AT_rich Low_complexity Low_complexity 1 62 0 2267 88 0 52 chr4 36296523 36296851 -147991811 - AluY SINE Alu 0 311 1 191 325 52 0 chr4 36297136 36297213 -147991449 + MIR SINE MIR 80 160 -102 198 143 0 0 chr4 36298040 36298075 -147990587 + (TC)n Simple_repeat Simple_repeat 2 36 0 237 288 90 27 chr4 36300819 36300930 -147987732 + L2 LINE L2 3196 3313 0 1540 84 5 0 chr4 36302739 36302954 -147985708 - L1PA8 LINE L1 0 6172 5957 613 335 37 0 chr4 36304861 36305052 -147983610 + MIR SINE MIR 1 198 -64 1366 186 28 0 chr4 36305075 36305322 -147983340 + AluJb SINE Alu 29 282 -30 1505 256 55 21 chr4 36305371 36305805 -147982857 + MLT1F1 LTR MaLR 5 453 -114 405 0 0 0 chr4 36305958 36306003 -147982659 + (CA)n Simple_repeat Simple_repeat 2 46 0 2276 251 26 4 chr4 36306003 36306541 -147982121 - MER89 LTR ERV1 -9 550 1 238 237 85 0 chr4 36307386 36307445 -147981217 - L2 LINE L2 0 3313 3250 204 403 67 20 chr4 36308922 36309071 -147979591 + L2 LINE L2 3117 3272 0 261 0 0 0 chr4 36309383 36309412 -147979250 + (T)n Simple_repeat Simple_repeat 1 29 0 1953 153 138 13 chr4 36309591 36309983 -147978679 - L1MA3 LINE L1 0 6305 5865 2656 29 0 3 chr4 36310074 36310385 -147978277 - AluYb8 SINE Alu -8 310 1 185 0 40 0 chr4 36310471 36310496 -147978166 + (CA)n Simple_repeat Simple_repeat 2 27 0 2683 42 6 0 chr4 36310546 36310879 -147977783 + L1PA4 LINE L1 5821 6155 0 183 100 0 0 chr4 36310934 36310964 -147977698 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 189 0 0 0 chr4 36311022 36311043 -147977619 + (TTCA)n Simple_repeat Simple_repeat 2 22 0 208 347 20 0 chr4 36311242 36311340 -147977322 - L2 LINE L2 -1216 2098 1999 1802 126 53 0 chr4 36311597 36311898 -147976764 - L1PA13 LINE L1 -1 6162 5846 1781 148 21 3 chr4 36313903 36314194 -147974468 + AluSx SINE Alu 1 296 -16 227 53 0 26 chr4 36315631 36315669 -147972993 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 203 184 20 0 chr4 36315687 36315736 -147972926 + (TG)n Simple_repeat Simple_repeat 1 50 0 235 329 14 0 chr4 36315740 36315810 -147972852 + MIR SINE MIR 59 129 -133 206 290 30 50 chr4 36315916 36316016 -147972646 - MIR SINE MIR -66 142 45 259 367 19 60 chr4 36316048 36316263 -147972399 - L2 LINE L2 -478 2836 2631 375 88 0 29 chr4 36317561 36317629 -147971033 - L1PA15 LINE L1 -7 6158 6093 21 36 0 0 chr4 36318607 36318635 -147970027 + AT_rich Low_complexity Low_complexity 1 28 0 2225 107 0 3 chr4 36318776 36319084 -147969578 - AluSg SINE Alu -3 307 1 969 251 0 9 chr4 36319476 36319699 -147968963 - MER58A DNA MER1_type 0 224 4 226 350 21 7 chr4 36320599 36320739 -147967923 - L2 LINE L2 -957 2357 2216 21 36 0 0 chr4 36321925 36321953 -147966709 + AT_rich Low_complexity Low_complexity 1 28 0 1265 253 94 25 chr4 36322119 36322649 -147966013 - MLT1E2 LTR MaLR 0 626 90 340 258 73 24 chr4 36322687 36322811 -147965851 + MIR SINE MIR 25 154 -108 1634 39 0 0 chr4 36323626 36323832 -147964830 - L1PA5 LINE L1 -1606 4540 4335 7228 41 3 3 chr4 36323837 36325447 -147963215 + L1PA5 LINE L1 4542 6151 -3 329 326 69 50 chr4 36328758 36329019 -147959643 - L1M4 LINE L1 -1313 4833 4568 356 319 108 54 chr4 36329160 36330282 -147958380 - L1M4 LINE L1 -2368 3778 2570 215 247 222 12 chr4 36330385 36330466 -147958196 + L2 LINE L2 2414 2511 -803 663 287 93 0 chr4 36330587 36330803 -147957859 - L2 LINE L2 -671 2643 2408 337 313 6 30 chr4 36331240 36331406 -147957256 - L1MC4a LINE L1 -1878 5930 5769 307 228 65 11 chr4 36331482 36331574 -147957088 - L1M4 LINE L1 -3859 2287 2191 3324 187 18 0 chr4 36331616 36332216 -147956446 + Tigger1 DNA MER2_type 1 611 -1807 * 9686 126 19 37 chr4 36332184 36332414 -147956248 + Tigger1 DNA MER2_type 796 1029 -1389 1920 112 38 0 chr4 36332414 36332704 -147955958 + AluSp SINE Alu 9 308 0 9686 126 19 37 chr4 36332704 36334125 -147954537 + Tigger1 DNA MER2_type 1029 2418 0 869 235 26 33 chr4 36334704 36335010 -147953652 + LTR37A LTR ERV1 55 358 -68 2646 207 74 16 chr4 36335010 36335150 -147953512 - L1MA9 LINE L1 -4 6308 6177 345 47 0 0 chr4 36335150 36335193 -147953469 + (TG)n Simple_repeat Simple_repeat 2 44 0 2646 207 74 16 chr4 36335193 36335718 -147952944 - L1MA9 LINE L1 -135 6177 5605 243 320 0 27 chr4 36336184 36336259 -147952403 - MIR SINE MIR -142 120 48 22 0 0 0 chr4 36336270 36336292 -147952370 + AT_rich Low_complexity Low_complexity 1 22 0 200 288 0 0 chr4 36337596 36337662 -147951000 + T-rich Low_complexity Low_complexity 1 66 0 22 0 0 0 chr4 36338292 36338314 -147950348 + AT_rich Low_complexity Low_complexity 1 22 0 591 13 27 0 chr4 36338594 36338669 -147949993 - L1PA4 LINE L1 -2 6153 6077 3523 155 41 36 chr4 36340605 36341386 -147947276 + LTR1 LTR ERV1 1 785 0 466 239 92 54 chr4 36341399 36341583 -147947079 + MIR SINE MIR 72 262 0 1896 168 0 0 chr4 36342227 36342537 -147946125 + AluSx SINE Alu 1 310 -2 2213 119 27 3 chr4 36343205 36343541 -147945121 - THE1A LTR MaLR 0 355 12 11227 97 9 15 chr4 36343541 36345121 -147943541 - THE1A-int LTR MaLR -9 1571 1 1460 135 9 0 chr4 36345121 36345350 -147943312 - THE1A LTR MaLR 0 355 125 768 119 24 24 chr4 36345467 36345593 -147943069 - THE1A LTR MaLR -249 126 1 315 0 0 0 chr4 36346182 36346217 -147942445 + (CA)n Simple_repeat Simple_repeat 2 36 0 390 260 65 55 chr4 36346279 36346479 -147942183 + L2 LINE L2 3112 3313 0 232 300 14 0 chr4 36346481 36346551 -147942111 + MIR SINE MIR 171 241 -21 189 313 109 0 chr4 36348389 36348453 -147940209 + L2 LINE L2 3202 3272 0 291 373 46 14 chr4 36348700 36348917 -147939745 - MIR SINE MIR -28 234 11 240 277 53 21 chr4 36349363 36349457 -147939205 + L2 LINE L2 2158 2254 -1060 471 290 39 120 chr4 36349718 36350052 -147938610 + MLT1J LTR MaLR 37 343 -168 427 321 37 23 chr4 36350064 36350279 -147938383 + L2 LINE L2 3088 3305 -8 21 71 0 0 chr4 36351208 36351250 -147937412 + AT_rich Low_complexity Low_complexity 1 42 0 235 338 31 59 chr4 36351558 36351780 -147936882 - L2 LINE L2 0 3313 3098 1924 154 39 20 chr4 36351781 36352137 -147936525 + THE1C LTR MaLR 13 375 0 438 261 64 25 chr4 36352143 36352300 -147936362 - L2 LINE L2 -278 3035 2873 327 232 27 18 chr4 36353667 36353779 -147934883 + L1MC/D LINE L1 4532 4644 -1502 1441 221 0 0 chr4 36353807 36354078 -147934584 - MLT2C1 LTR ERVL -126 271 1 26 30 0 0 chr4 36354376 36354409 -147934253 + AT_rich Low_complexity Low_complexity 1 33 0 245 271 80 33 chr4 36355444 36355595 -147933067 + L1MC/D LINE L1 5595 5752 -2056 758 244 176 0 chr4 36355792 36356030 -147932632 + L1M4 LINE L1 4562 4841 -1305 182 175 0 18 chr4 36356054 36356111 -147932551 + (TTAA)n Simple_repeat Simple_repeat 3 58 0 468 256 56 0 chr4 36356112 36356237 -147932425 + L1M4 LINE L1 4847 4978 -1168 24 0 0 0 chr4 36356407 36356431 -147932231 + AT_rich Low_complexity Low_complexity 1 24 0 198 370 49 25 chr4 36357995 36358238 -147930424 + L2 LINE L2 1129 1377 -1937 430 333 44 15 chr4 36358244 36358448 -147930214 - MIR SINE MIR -3 259 50 1765 135 97 26 chr4 36358625 36358965 -147929697 + THE1B LTR MaLR 1 364 0 299 326 157 30 chr4 36359023 36359084 -147929578 + L2 LINE L2 1610 1662 -1652 186 103 0 0 chr4 36359084 36359113 -147929549 + (TAA)n Simple_repeat Simple_repeat 2 30 0 299 326 157 30 chr4 36359113 36359377 -147929285 + L2 LINE L2 1662 1996 -1318 993 257 85 101 chr4 36359377 36359980 -147928682 - MLT1E LTR MaLR 0 593 1 299 326 157 30 chr4 36359980 36360049 -147928613 + L2 LINE L2 1996 2055 -1259 280 305 73 49 chr4 36360132 36360296 -147928366 + L2 LINE L2 2214 2381 -933 250 279 25 51 chr4 36360838 36360917 -147927745 + L2 LINE L2 2932 3008 -264 204 158 0 0 chr4 36361594 36361632 -147927030 + (TA)n Simple_repeat Simple_repeat 2 39 0 214 182 78 0 chr4 36361700 36361777 -147926885 + (TA)n Simple_repeat Simple_repeat 1 83 0 21 0 0 0 chr4 36361877 36361898 -147926764 + AT_rich Low_complexity Low_complexity 1 21 0 973 219 15 5 chr4 36362184 36362389 -147926273 + MER3 DNA MER1_type 1 207 -2 863 253 20 0 chr4 36362605 36362803 -147925859 + MER58A DNA MER1_type 20 221 -3 201 349 16 32 chr4 36362886 36363012 -147925650 - L2 LINE L2 -182 3090 2967 191 189 19 0 chr4 36363082 36363135 -147925527 + (TA)n Simple_repeat Simple_repeat 2 55 0 40 42 0 14 chr4 36363264 36363311 -147925351 + AT_rich Low_complexity Low_complexity 1 48 -23 215 39 19 58 chr4 36363311 36363363 -147925299 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 40 42 0 14 chr4 36363363 36363387 -147925275 + AT_rich Low_complexity Low_complexity 48 71 0 24 0 0 0 chr4 36363808 36363832 -147924830 + AT_rich Low_complexity Low_complexity 1 24 0 397 264 16 16 chr4 36365658 36365783 -147922879 - MER103 DNA DNA -39 127 3 426 20 0 0 chr4 36366218 36366269 -147922393 + (TG)n Simple_repeat Simple_repeat 2 52 0 201 302 168 47 chr4 36367113 36367262 -147921400 + MIR SINE MIR 35 201 -61 1049 183 0 0 chr4 36367378 36367558 -147921104 - L1PB4 LINE L1 -13 6143 5964 200 189 0 0 chr4 36367572 36367609 -147921053 + CT-rich Low_complexity Low_complexity 4 40 0 25 31 0 0 chr4 36367646 36367678 -147920984 + AT_rich Low_complexity Low_complexity 1 32 0 2253 53 3 23 chr4 36368839 36369140 -147919522 + AluY SINE Alu 1 295 -16 22 35 0 0 chr4 36370158 36370187 -147918475 + AT_rich Low_complexity Low_complexity 1 29 0 218 28 0 56 chr4 36371165 36371201 -147917461 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 1902 131 0 81 chr4 36371494 36371829 -147916833 + AluSx SINE Alu 2 309 -3 2096 147 11 22 chr4 36371843 36372211 -147916451 + THE1B LTR MaLR 1 364 0 21 57 0 0 chr4 36372433 36372468 -147916194 + AT_rich Low_complexity Low_complexity 1 35 0 231 189 0 0 chr4 36372549 36372602 -147916060 + (TA)n Simple_repeat Simple_repeat 2 54 0 2036 108 10 7 chr4 36372968 36373263 -147915399 + AluSq SINE Alu 1 296 -17 2406 30 39 23 chr4 36373395 36373700 -147914962 - AluY SINE Alu -1 310 1 180 158 0 0 chr4 36374470 36374508 -147914154 + (TG)n Simple_repeat Simple_repeat 2 39 0 21 57 0 0 chr4 36375201 36375236 -147913426 + AT_rich Low_complexity Low_complexity 1 35 0 28 48 0 0 chr4 36375883 36375925 -147912737 + AT_rich Low_complexity Low_complexity 1 42 0 183 234 21 0 chr4 36376134 36376181 -147912481 - L2 LINE L2 -221 3051 3004 635 332 43 38 chr4 36377066 36377461 -147911201 + LTR16B LTR ERVL 37 433 -31 26 30 0 0 chr4 36377735 36377768 -147910894 + AT_rich Low_complexity Low_complexity 1 33 0 224 214 0 0 chr4 36379952 36380008 -147908654 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 484 277 89 31 chr4 36380447 36380662 -147908000 + MIR SINE MIR 4 225 -21 351 325 41 71 chr4 36382962 36383125 -147905537 + MIR3 SINE MIR 6 164 -44 1995 129 13 31 chr4 36383125 36383443 -147905219 - AluSx SINE Alu 0 312 1 351 325 41 71 chr4 36383443 36383476 -147905186 + MIR3 SINE MIR 164 196 -12 232 206 44 29 chr4 36384008 36384076 -147904586 + GA-rich Low_complexity Low_complexity 3 71 0 330 67 0 0 chr4 36384089 36384134 -147904528 + (GA)n Simple_repeat Simple_repeat 2 46 0 27 0 0 0 chr4 36384227 36384254 -147904408 + AT_rich Low_complexity Low_complexity 1 27 0 26 50 0 0 chr4 36384962 36385002 -147903660 + AT_rich Low_complexity Low_complexity 1 40 0 47 19 0 0 chr4 36385034 36385088 -147903574 + AT_rich Low_complexity Low_complexity 1 54 0 22 70 0 0 chr4 36386334 36386377 -147902285 + AT_rich Low_complexity Low_complexity 1 43 0 689 150 8 8 chr4 36386922 36387049 -147901613 - MER52A LTR ERV1 0 1755 1629 * 3499 208 163 34 chr4 36387047 36388045 -147900617 - MER52A LTR ERV1 -628 1127 1 380 138 0 25 chr4 36388613 36388693 -147899969 + (TCCC)n Simple_repeat Simple_repeat 2 79 0 750 81 24 8 chr4 36388694 36388818 -147899844 + (TTTC)n Simple_repeat Simple_repeat 4 129 0 787 170 18 118 chr4 36388818 36389225 -147899437 - AluJo SINE Alu 0 469 86 448 256 87 17 chr4 36389239 36389411 -147899251 + MLT1I LTR MaLR 226 409 0 3241 73 5 0 chr4 36389818 36390243 -147898419 - L1PA7 LINE L1 -11 6143 5717 387 320 50 23 chr4 36390644 36390863 -147897799 - HAL1 LINE L1 -1322 1185 961 535 353 83 9 chr4 36390937 36391274 -147897388 - HAL1 LINE L1 -1994 513 152 2390 88 0 0 chr4 36391420 36391725 -147896937 + AluY SINE Alu 3 307 -4 2068 131 3 3 chr4 36391741 36392047 -147896615 + AluSx SINE Alu 1 306 -6 288 205 71 94 chr4 36392047 36392174 -147896488 - L1MB8 LINE L1 -11 6167 6044 276 348 7 15 chr4 36392193 36392328 -147896334 + (TATG)n Simple_repeat Simple_repeat 2 135 0 252 0 0 0 chr4 36392508 36392536 -147896126 + (TG)n Simple_repeat Simple_repeat 1 28 0 357 226 0 49 chr4 36393289 36393391 -147895271 - L1MC4 LINE L1 -1339 6983 1996 198 224 0 0 chr4 36393391 36393440 -147895222 + (TA)n Simple_repeat Simple_repeat 2 50 0 21 71 0 0 chr4 36393857 36393899 -147894763 + AT_rich Low_complexity Low_complexity 1 42 0 209 328 75 52 chr4 36394839 36394973 -147893689 - L2 LINE L2 0 3272 3136 501 95 14 0 chr4 36395262 36395336 -147893326 + MADE1 DNA Mariner 1 75 -5 2214 112 0 0 chr4 36395472 36395768 -147892894 - AluSg SINE Alu -14 296 1 452 303 95 84 chr4 36395951 36396308 -147892354 + LTR67 LTR ERVL 146 506 -51 384 333 138 62 chr4 36397095 36397608 -147891054 - L2 LINE L2 -52 3261 2706 1899 332 57 20 chr4 36397643 36397795 -147890867 - L2 LINE L2 -1754 1560 1415 563 0 0 15 chr4 36397795 36397863 -147890799 + (TAAAA)n Simple_repeat Simple_repeat 1 67 0 1899 332 57 20 chr4 36397863 36398669 -147889993 - L2 LINE L2 -1899 1415 566 1920 176 78 24 chr4 36399327 36399737 -147888925 + MSTB1 LTR MaLR 1 432 0 1982 185 82 0 chr4 36400542 36400931 -147887731 - MSTA LTR MaLR 0 428 8 327 284 74 40 chr4 36401334 36401482 -147887180 + LTR16C LTR ERVL 85 237 -254 2158 197 36 24 chr4 36401849 36402346 -147886316 - MLT1D LTR MaLR 0 505 3 1307 146 27 0 chr4 36402497 36402717 -147885945 + AluJb SINE Alu 85 310 -2 647 173 17 11 chr4 36403083 36403262 -147885400 + (CA)n Simple_repeat Simple_repeat 1 180 0 1272 259 63 66 chr4 36404968 36405631 -147883031 + L1MC4 LINE L1 7112 7772 -270 291 85 0 0 chr4 36406088 36406135 -147882527 + (TTTTG)n Simple_repeat Simple_repeat 3 49 0 1962 106 9 44 chr4 36406751 36407072 -147881590 - AluSg SINE Alu 0 310 1 1976 169 46 33 chr4 36407220 36407753 -147880909 - MLT2A1 LTR ERVL -1 553 1 200 350 25 0 chr4 36407762 36407842 -147880820 + L2 LINE L2 2920 3001 -312 207 0 0 0 chr4 36408033 36408056 -147880606 + (T)n Simple_repeat Simple_repeat 1 23 0 408 341 22 39 chr4 36408839 36409018 -147879644 + MIR SINE MIR 80 255 -7 256 314 69 57 chr4 36410130 36410305 -147878357 - MIR SINE MIR -7 255 79 204 419 9 0 chr4 36410447 36410552 -147878110 - L2 LINE L2 -214 3058 2953 762 211 188 0 chr4 36412074 36412292 -147876370 + L1MC4 LINE L1 7415 7673 -369 233 272 26 9 chr4 36412751 36412865 -147875797 + T-rich Low_complexity Low_complexity 4 119 0 24 32 0 0 chr4 36413600 36413631 -147875031 + AT_rich Low_complexity Low_complexity 1 31 0 224 294 144 20 chr4 36413715 36413868 -147874794 - MIR SINE MIR 0 262 91 191 271 59 47 chr4 36414194 36414279 -147874383 + MIR SINE MIR 104 189 -73 22 103 0 0 chr4 36415097 36415175 -147873487 + AT_rich Low_complexity Low_complexity 1 78 0 248 316 13 0 chr4 36415994 36416070 -147872592 + MIR SINE MIR 180 256 -6 234 259 0 37 chr4 36417084 36417165 -147871497 + T-rich Low_complexity Low_complexity 2 79 0 375 23 0 0 chr4 36417431 36417475 -147871187 + (TG)n Simple_repeat Simple_repeat 1 44 0 180 0 0 0 chr4 36417476 36417496 -147871166 + (GA)n Simple_repeat Simple_repeat 1 20 0 395 248 92 34 chr4 36419416 36419556 -147869106 - MIR SINE MIR -63 145 19 374 289 160 13 chr4 36419885 36420041 -147868621 - MIR SINE MIR -13 249 71 2351 159 27 9 chr4 36420191 36420606 -147868056 - MSTA LTR MaLR -6 422 1 23 54 0 0 chr4 36421219 36421256 -147867406 + AT_rich Low_complexity Low_complexity 1 37 0 210 231 0 0 chr4 36421341 36421392 -147867270 + polypurine Low_complexity Low_complexity 1 51 0 225 0 0 0 chr4 36421825 36421850 -147866812 + (CA)n Simple_repeat Simple_repeat 2 26 0 1945 137 52 25 chr4 36421891 36422256 -147866406 + THE1C LTR MaLR 1 375 0 960 128 44 33 chr4 36422258 36422438 -147866224 + THE1C-int LTR MaLR 3 184 -1396 1963 187 30 32 chr4 36422658 36423091 -147865571 - MSTB1 LTR MaLR 0 432 1 360 0 0 0 chr4 36423863 36423903 -147864759 + (TG)n Simple_repeat Simple_repeat 2 41 0 222 239 15 0 chr4 36423903 36423970 -147864692 + (TA)n Simple_repeat Simple_repeat 2 69 0 24 32 0 0 chr4 36425353 36425384 -147863278 + AT_rich Low_complexity Low_complexity 1 31 0 3324 130 23 38 chr4 36425423 36425952 -147862710 + MER1A DNA MER1_type 1 521 -8 2231 98 0 13 chr4 36426247 36426553 -147862109 - AluSc SINE Alu -7 302 1 186 301 43 32 chr4 36426584 36426677 -147861985 - L2 LINE L2 -535 2779 2686 202 200 0 0 chr4 36427197 36427232 -147861430 - MIR SINE MIR -10 252 218 198 143 0 0 chr4 36427770 36427805 -147860857 + (GGA)n Simple_repeat Simple_repeat 2 36 0 1407 111 0 15 chr4 36628303 36628501 -147660161 - AluSp SINE Alu -118 195 1 1988 224 99 17 chr4 36628501 36628663 -147659999 - L1MC4a LINE L1 -224 7584 7437 1847 141 5 83 chr4 36628663 36629038 -147659624 + MER7A DNA MER2_type 2 345 -1 1988 224 99 17 chr4 36629038 36629546 -147659116 - L1MC4a LINE L1 -371 7437 6874 1230 279 78 25 chr4 36630116 36630632 -147658030 - MLT1H LTR MaLR 0 549 7 267 103 0 0 chr4 36630955 36630994 -147657668 + (TA)n Simple_repeat Simple_repeat 1 39 0 925 137 29 0 chr4 36631321 36631460 -147657202 - MER30 DNA MER1_type -1 229 87 3081 242 60 9 chr4 36632385 36633370 -147655292 - L1M4 LINE L1 -1114 5032 3998 474 200 11 21 chr4 36634638 36634733 -147653929 + L1PBa LINE L1 1547 1640 -5223 * 5440 175 27 19 chr4 36634711 36635823 -147652839 + L1PBb LINE L1 15 1135 -5069 2241 86 7 0 chr4 36636144 36636445 -147652217 + AluY SINE Alu 1 303 -8 252 103 0 0 chr4 36636560 36636599 -147652063 - MADE1 DNA Mariner -41 39 1 22 35 0 0 chr4 36636764 36636793 -147651869 + AT_rich Low_complexity Low_complexity 1 29 0 1365 182 26 4 chr4 36637005 36637274 -147651388 - LTR22 LTR ERVK -4 505 231 8764 89 11 2 chr4 36637375 36638553 -147650109 + HERVL LTR ERVL 1551 2738 -2916 2160 176 33 81 chr4 36638788 36638945 -147649717 - L1MA10 LINE L1 -1 6333 6170 2702 22 0 10 chr4 36638945 36639258 -147649404 - AluY SINE Alu -1 310 1 2160 176 33 81 chr4 36639258 36639645 -147649017 - L1MA10 LINE L1 -164 6170 5815 234 98 87 65 chr4 36639698 36639790 -147648872 + (TTTA)n Simple_repeat Simple_repeat 3 96 0 249 273 0 0 chr4 36639793 36639859 -147648803 + MER63 DNA MER1_type 684 749 -311 492 72 0 0 chr4 36640086 36640155 -147648507 + L1P LINE L1 5318 5386 -788 * 3511 245 22 10 chr4 36640150 36641219 -147647443 - L1M4 LINE L1 -2360 3786 2705 2541 84 14 0 chr4 36641356 36641701 -147646961 - HERVL-A2 LTR ERVL -5304 350 1 394 91 0 0 chr4 36641701 36641756 -147646906 - MLT2A2 LTR ERVL 0 453 399 315 190 0 100 chr4 36641787 36641887 -147646775 - L1MC4 LINE L1 -1339 6703 6614 348 103 0 0 chr4 36641895 36641953 -147646709 + (TA)n Simple_repeat Simple_repeat 2 59 0 1490 62 54 120 chr4 36641953 36642229 -147646433 - MLT2A2 LTR ERVL -195 258 1 789 209 37 28 chr4 36642229 36642444 -147646218 + THE1C LTR MaLR 107 323 -52 244 286 22 44 chr4 36642568 36642664 -147645998 - MIR SINE MIR -105 103 18 308 256 26 43 chr4 36644667 36644784 -147643878 - Charlie8 DNA MER1_type -2200 217 103 1454 334 111 25 chr4 36644887 36646233 -147642429 + L2 LINE L2 1845 3312 -1 204 294 24 24 chr4 36647499 36647584 -147641078 - MIR SINE MIR -21 241 157 1849 163 38 16 chr4 36648489 36648857 -147639805 - MER6 DNA MER2_type 0 865 230 4019 201 34 11 chr4 36648993 36650107 -147638555 + L1P4 LINE L1 4352 5501 -665 757 136 0 0 chr4 36650110 36650220 -147638442 + Ricksha DNA DNA 333 442 -812 764 185 0 15 chr4 36650429 36650564 -147638098 + FLAM_C SINE Alu 1 133 0 326 217 103 98 chr4 36650828 36651215 -147637447 + L1ME4a LINE L1 5693 6081 -40 1638 112 13 70 chr4 36651251 36651563 -147637099 - L1MA6 LINE L1 0 6300 6007 1759 156 55 30 chr4 36651899 36652265 -147636397 - THE1C LTR MaLR 0 375 1 2196 116 0 3 chr4 36652290 36652593 -147636069 - AluSx SINE Alu -10 302 1 2197 100 0 0 chr4 36653112 36653475 -147635187 - AluSc SINE Alu 0 363 1 1219 203 24 117 chr4 36653704 36654035 -147634627 - MLT1B LTR MaLR -10 380 94 2136 122 3 13 chr4 36654035 36654347 -147634315 + AluSc SINE Alu 1 309 0 1219 203 24 117 chr4 36654347 36654434 -147634228 - MLT1B LTR MaLR -296 94 1 224 288 17 0 chr4 36654605 36654664 -147633998 - L2 LINE L2 0 3272 3213 22 56 0 0 chr4 36655244 36655280 -147633382 + AT_rich Low_complexity Low_complexity 1 36 0 329 217 22 16 chr4 36656023 36656150 -147632512 - L1MEc LINE L1 -3127 3088 2962 666 231 55 48 chr4 36656155 36656495 -147632167 - L1MEc LINE L1 -3766 2461 2146 230 245 75 19 chr4 36656628 36656734 -147631928 - L1M4 LINE L1 -3034 3112 3001 2312 264 48 18 chr4 36656830 36657859 -147630803 + L1M3 LINE L1 4684 5745 -438 1721 139 102 24 chr4 36657859 36658191 -147630471 + MSTA LTR MaLR 1 358 -70 2462 243 42 9 chr4 36658292 36659261 -147629401 + L1M2 LINE L1 2540 3489 -4076 2097 111 3 7 chr4 36659363 36659651 -147629011 + AluSc SINE Alu 1 287 -22 1007 117 0 0 chr4 36659754 36659891 -147628771 - AluSg SINE Alu -173 137 1 503 16 16 0 chr4 36660120 36660184 -147628478 + (TG)n Simple_repeat Simple_repeat 2 66 0 253 325 12 0 chr4 36660855 36660938 -147627724 + MIR3 SINE MIR 124 207 -1 22 35 0 0 chr4 36661115 36661144 -147627518 + AT_rich Low_complexity Low_complexity 1 29 0 945 268 43 31 chr4 36661607 36661958 -147626704 + HAL1 LINE L1 1347 1701 -806 2117 136 0 0 chr4 36662442 36662744 -147625918 - AluJb SINE Alu -10 302 1 2337 97 0 6 chr4 36663956 36664267 -147624395 - AluSp SINE Alu -4 309 1 200 213 21 0 chr4 36664777 36664824 -147623838 + GA-rich Low_complexity Low_complexity 2 49 0 690 262 87 34 chr4 36664863 36665117 -147623545 + MIR SINE MIR 3 261 -1 1980 188 3 6 chr4 36665298 36665644 -147623018 + MLT1A1 LTR MaLR 21 365 0 29 0 0 0 chr4 36666124 36666153 -147622509 + AT_rich Low_complexity Low_complexity 1 29 0 205 400 136 7 chr4 36666428 36666583 -147622079 - L2 LINE L2 -3 3269 3095 908 234 34 79 chr4 36666670 36667025 -147621637 + MLT1C LTR MaLR 1 339 -128 232 262 33 0 chr4 36667141 36667202 -147621460 + LTR16A LTR ERVL 383 445 -5 4691 81 11 0 chr4 36668367 36669006 -147619656 + L1PA13 LINE L1 5517 6162 -1 374 299 14 54 chr4 36670285 36670563 -147618099 - L1MEc LINE L1 -4729 1667 1401 393 284 88 15 chr4 36670633 36670837 -147617825 + L1ME LINE L1 5417 5635 -531 367 275 7 49 chr4 36670900 36671042 -147617620 + L1ME LINE L1 5633 5768 -394 1705 39 0 14 chr4 36671311 36671518 -147617144 - AluY SINE Alu -16 295 92 23 68 0 0 chr4 36672686 36672730 -147615932 + AT_rich Low_complexity Low_complexity 1 44 0 2013 83 12 0 chr4 36673237 36673489 -147615173 - AluSx SINE Alu -54 258 4 3578 129 81 24 chr4 36673492 36674499 -147614163 - L1MA5A LINE L1 -345 5952 4897 1849 148 0 14 chr4 36675265 36675555 -147613107 - AluSx SINE Alu -26 286 1 364 319 53 0 chr4 36675556 36675669 -147612993 - 7SLRNA srpRNA srpRNA -161 159 41 294 154 77 15 chr4 36675964 36676029 -147612633 - L1MA9 LINE L1 0 6312 6244 24 53 0 0 chr4 36677087 36677125 -147611537 + AT_rich Low_complexity Low_complexity 1 38 0 503 265 8 43 chr4 36677977 36678122 -147610540 + MIR SINE MIR 20 158 -61 300 53 0 0 chr4 36678715 36678753 -147609909 + (TC)n Simple_repeat Simple_repeat 2 39 0 383 0 21 0 chr4 36678943 36678990 -147609672 + (GA)n Simple_repeat Simple_repeat 1 48 0 401 307 34 39 chr4 36679105 36679310 -147609352 - MIR3 SINE MIR -2 206 3 5025 61 7 6 chr4 36679437 36680206 -147608456 + L1PA6 LINE L1 5164 5931 -223 4972 119 14 37 chr4 36680887 36681744 -147606918 + MER4D LTR ERV1 58 894 -9 385 79 11 0 chr4 36682052 36682118 -147606544 - L1M4 LINE L1 -638 5525 5456 24 0 0 0 chr4 36682549 36682573 -147606089 + AT_rich Low_complexity Low_complexity 1 24 0 312 281 73 21 chr4 36683314 36683410 -147605252 + L2 LINE L2 3208 3308 -5 293 227 21 41 chr4 36684573 36684670 -147603992 - MIR SINE MIR -46 216 122 219 151 27 5 chr4 36685374 36685451 -147603211 + L2 LINE L2 3191 3308 -5 366 345 52 11 chr4 36685465 36685639 -147603023 - MIR SINE MIR -61 201 21 193 80 0 0 chr4 36686995 36687020 -147601642 - L2 LINE L2 -20 3293 3269 497 296 19 51 chr4 36687545 36687761 -147600901 + MIR SINE MIR 2 210 -52 242 284 27 14 chr4 36688456 36688530 -147600132 - LTR67 LTR ERVL -383 174 100 267 151 159 103 chr4 36688671 36688797 -147599865 - MLT1F LTR MaLR 0 542 410 1925 159 207 19 chr4 36689322 36689862 -147598800 + LTR8A LTR ERV1 1 642 -85 25 0 0 0 chr4 36690432 36690457 -147598205 + AT_rich Low_complexity Low_complexity 1 25 0 435 270 84 47 chr4 36690891 36691165 -147597497 - LTR16A1 LTR ERVL -85 372 89 184 179 0 36 chr4 36692572 36692628 -147596034 + CT-rich Low_complexity Low_complexity 5 58 0 207 0 0 0 chr4 36692788 36692811 -147595851 + (A)n Simple_repeat Simple_repeat 1 23 0 673 257 50 30 chr4 36693321 36693756 -147594906 - MLT1H LTR MaLR 0 549 13 2006 169 32 26 chr4 36694060 36694091 -147594571 + L1 LINE L1 3930 3959 -2187 2104 127 0 17 chr4 36694091 36694390 -147594272 + AluSx SINE Alu 1 294 -18 2006 169 32 26 chr4 36694390 36694820 -147593842 + L1 LINE L1 3959 4394 -1752 618 180 7 156 chr4 36694922 36695199 -147593463 - LTR34 LTR ERV1 -234 465 136 421 191 19 19 chr4 36695283 36695388 -147593274 - MER4A LTR ERV1 -559 105 1 677 309 71 30 chr4 36695492 36695587 -147593075 - L2 LINE L2 -145 3168 3078 3996 119 26 3 chr4 36695587 36696208 -147592454 + MER41B LTR ERV1 1 635 0 677 309 71 30 chr4 36696208 36696558 -147592104 - L2 LINE L2 -235 3078 2707 2090 127 14 0 chr4 36696897 36697188 -147591474 - AluSx SINE Alu -17 295 1 252 225 58 17 chr4 36697319 36697439 -147591223 + (TA)n Simple_repeat Simple_repeat 2 126 0 214 321 0 0 chr4 36697698 36697754 -147590908 + MIR SINE MIR 55 110 -152 248 284 149 14 chr4 36698617 36698758 -147589904 + L2 LINE L2 3108 3267 -5 188 264 161 11 chr4 36699611 36699698 -147588964 + MIR SINE MIR 12 111 -151 259 253 0 0 chr4 36700667 36700742 -147587920 - MER103 DNA DNA -81 85 11 2100 124 0 0 chr4 36700895 36701209 -147587453 - AluSx SINE Alu 0 314 1 762 305 60 0 chr4 36701493 36701726 -147586936 - MIR SINE MIR -15 247 1 563 279 61 6 chr4 36701733 36701898 -147586764 - L2 LINE L2 -241 3072 2899 201 133 0 0 chr4 36702715 36702745 -147585917 + (CATA)n Simple_repeat Simple_repeat 3 32 0 308 314 146 22 chr4 36702842 36702979 -147585683 - L2 LINE L2 0 3272 3119 1541 205 30 19 chr4 36703920 36704281 -147584381 + MLT1A1 LTR MaLR 1 365 0 244 244 47 35 chr4 36704484 36704570 -147584092 - MLT1K LTR MaLR -320 268 182 1686 182 11 0 chr4 36705839 36706125 -147582537 + AluJo SINE Alu 1 289 -23 209 215 9 56 chr4 36706912 36707019 -147581643 + (TTTAA)n Simple_repeat Simple_repeat 4 105 0 571 286 98 10 chr4 36707228 36707431 -147581231 + MIR SINE MIR 29 249 -13 319 37 19 37 chr4 36707477 36707531 -147581131 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 2395 295 51 34 chr4 36707885 36709255 -147579407 + L1PBa LINE L1 7 1400 -5463 313 259 157 42 chr4 36710228 36710514 -147578148 - L1ME4a LINE L1 -38 6083 5765 212 338 0 0 chr4 36710519 36710593 -147578069 + (TAA)n Simple_repeat Simple_repeat 1 74 0 262 316 58 22 chr4 36710635 36710774 -147577888 - MIR SINE MIR -23 239 96 346 328 18 35 chr4 36710775 36710946 -147577716 - MER5A DNA MER1_type -11 178 11 395 313 14 14 chr4 36710796 36710943 -147577719 + MER5B DNA MER1_type 31 177 -1 751 260 35 8 chr4 36711094 36711352 -147577310 - MER93a LTR ERV1 -13 389 125 195 42 0 0 chr4 36712733 36712757 -147575905 + (CA)n Simple_repeat Simple_repeat 2 25 0 216 0 0 0 chr4 36712966 36712990 -147575672 + (A)n Simple_repeat Simple_repeat 1 24 0 1941 145 13 32 chr4 36713579 36713673 -147574989 + L1MB1 LINE L1 5800 5894 -274 692 163 32 8 chr4 36713673 36713796 -147574866 + FLAM_C SINE Alu 1 126 -7 1941 145 13 32 chr4 36713796 36714074 -147574588 + L1MB1 LINE L1 5894 6165 -3 260 373 45 70 chr4 36714348 36714592 -147574070 - L2 LINE L2 -2 3270 3033 386 259 76 70 chr4 36715093 36715278 -147573384 + MER5A DNA MER1_type 1 186 -3 576 229 21 42 chr4 36715288 36715432 -147573230 + MER5B DNA MER1_type 36 176 -2 409 329 161 0 chr4 36715442 36715597 -147573065 - MER5A DNA MER1_type 0 189 10 205 162 0 0 chr4 36716073 36716110 -147572552 + (CA)n Simple_repeat Simple_repeat 1 37 0 1031 180 19 0 chr4 36716118 36716324 -147572338 + MLT2C2 LTR ERVL 1 210 -254 14303 83 2 1 chr4 36716425 36718506 -147570156 - L1P LINE L1 -1385 4761 2679 243 0 0 0 chr4 36719711 36719738 -147568924 + (T)n Simple_repeat Simple_repeat 1 27 0 195 42 0 0 chr4 36719945 36719969 -147568693 + (TG)n Simple_repeat Simple_repeat 2 25 0 25 31 0 0 chr4 36720464 36720496 -147568166 + AT_rich Low_complexity Low_complexity 1 32 0 32 26 0 0 chr4 36720851 36720890 -147567772 + AT_rich Low_complexity Low_complexity 1 39 0 462 315 35 7 chr4 36722302 36722445 -147566217 + MIR SINE MIR 2 148 -114 2011 188 29 11 chr4 36722450 36722896 -147565766 + L1MA4 LINE L1 5845 6298 -2 278 187 65 19 chr4 36724304 36724411 -147564251 + (TAGA)n Simple_repeat Simple_repeat 1 112 0 185 0 40 0 chr4 36725533 36725558 -147563104 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 1344 103 33 12 chr4 36726012 36726255 -147562407 - L1 LINE L1 -1338 4808 4561 216 278 28 28 chr4 36726801 36726909 -147561753 + GA-rich Low_complexity Low_complexity 1 108 0 630 245 20 7 chr4 36728074 36728221 -147560441 + MER58B DNA MER1_type 193 341 0 199 310 69 0 chr4 36728230 36728317 -147560345 - L2 LINE L2 -733 2581 2489 185 180 20 0 chr4 36728382 36728432 -147560230 + (TG)n Simple_repeat Simple_repeat 1 51 0 495 314 55 50 chr4 36730260 36730786 -147557876 + L1MC4a LINE L1 4736 5258 -888 627 287 23 11 chr4 36730792 36731053 -147557609 + L1MC4a LINE L1 5315 5578 -2230 1082 211 5 0 chr4 36731060 36731269 -147557393 + MER2 DNA MER2_type 1 210 -135 661 247 111 76 chr4 36731371 36732222 -147556440 + L1MC4a LINE L1 5583 6462 -1346 1992 157 16 0 chr4 36733666 36733971 -147554691 + AluSx SINE Alu 1 310 -2 375 217 68 75 chr4 36736448 36736609 -147552053 + LTR50 LTR ERVL 8 167 -628 2219 110 3 10 chr4 36736624 36736933 -147551729 + AluSx SINE Alu 1 307 -5 665 211 0 0 chr4 36737381 36737504 -147551158 - FLAM_C SINE Alu -18 125 3 686 281 111 47 chr4 36738025 36738512 -147550150 + LTR33A LTR ERVL 6 523 0 201 378 37 0 chr4 36738556 36738638 -147550024 + MIR SINE MIR 45 129 -79 545 300 77 14 chr4 36738857 36739077 -147549585 - MIR SINE MIR -25 237 4 214 167 0 0 chr4 36739604 36739640 -147549022 + (TATATG)n Simple_repeat Simple_repeat 1 36 0 370 271 30 8 chr4 36740304 36740437 -147548225 + L1MCc LINE L1 23 158 -6265 1000 261 32 19 chr4 36741290 36741604 -147547058 - LTR16A LTR ERVL 0 450 133 405 39 0 0 chr4 36741709 36741760 -147546902 + (TG)n Simple_repeat Simple_repeat 1 51 0 692 214 48 62 chr4 36741776 36742085 -147546577 + L1MC5 LINE L1 7634 7938 -23 1684 167 30 3 chr4 36742643 36742979 -147545683 + L1MA5 LINE L1 5948 6292 -8 23 54 0 0 chr4 36743136 36743173 -147545489 + AT_rich Low_complexity Low_complexity 1 37 0 396 0 0 0 chr4 36743561 36743605 -147545057 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 2003 102 4 0 chr4 36743614 36743880 -147544782 - AluSg SINE Alu -43 267 1 382 164 14 0 chr4 36745045 36745118 -147543544 + L1MB7 LINE L1 6055 6128 -56 307 375 69 17 chr4 36745939 36746171 -147542491 + MIR SINE MIR 2 245 -17 361 268 131 16 chr4 36746239 36746422 -147542240 + L1ME LINE L1 5574 5777 -344 1058 150 82 0 chr4 36746516 36746810 -147541852 + L1MB2 LINE L1 5163 5474 -709 279 0 0 0 chr4 36746812 36746843 -147541819 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 680 188 8 23 chr4 36746847 36746980 -147541682 + FLAM_C SINE Alu 1 131 -12 1842 168 9 0 chr4 36746990 36747329 -147541333 + L1MB2 LINE L1 5486 5827 -344 2542 38 0 0 chr4 36747330 36747623 -147541039 + AluY SINE Alu 1 293 -18 1067 95 0 7 chr4 36747723 36747870 -147540792 + AluY SINE Alu 153 298 -13 7322 149 44 18 chr4 36748115 36750087 -147538575 - L1MA8 LINE L1 -12 6279 4239 192 40 0 0 chr4 36750087 36750112 -147538550 + (TA)n Simple_repeat Simple_repeat 1 25 0 7322 149 44 18 chr4 36750112 36750597 -147538065 - L1MA8 LINE L1 -2052 4239 3768 215 200 0 29 chr4 36752049 36752119 -147536543 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 611 279 9 22 chr4 36752806 36753028 -147535634 + MER57B LTR ERV1 50 268 -166 24 32 0 0 chr4 36753641 36753672 -147534990 + AT_rich Low_complexity Low_complexity 1 31 0 218 304 22 22 chr4 36754046 36754138 -147534524 - MIR SINE MIR -47 215 124 507 357 15 0 chr4 36755090 36755286 -147533376 + MIR SINE MIR 48 246 -16 1573 144 8 8 chr4 36755778 36756021 -147532641 + AluSx SINE Alu 1 243 -69 236 189 19 0 chr4 36758584 36758637 -147530025 + (CGGG)n Simple_repeat Simple_repeat 2 55 0 428 303 36 30 chr4 36758746 36758911 -147529751 - MIR SINE MIR -88 174 9 1058 269 49 59 chr4 36760531 36761022 -147527640 + L2 LINE L2 2815 3300 -13 257 268 24 0 chr4 36762444 36762526 -147526136 + CT-rich Low_complexity Low_complexity 1 84 0 387 0 0 0 chr4 36762637 36762680 -147525982 + (TG)n Simple_repeat Simple_repeat 1 43 0 670 273 52 5 chr4 36762862 36763056 -147525606 + MIR SINE MIR 60 262 0 299 306 0 12 chr4 36764314 36764399 -147524263 + CT-rich Low_complexity Low_complexity 3 86 0 356 349 53 13 chr4 36764448 36764600 -147524062 + MIR SINE MIR 93 250 -12 275 242 0 0 chr4 36764619 36764681 -147523981 - MER67D LTR ERV1 0 514 453 777 229 12 78 chr4 36764753 36764997 -147523665 - MER67D LTR ERV1 -197 317 90 272 329 19 25 chr4 36765991 36766152 -147522510 - L1M3c LINE L1 -5981 160 1 225 125 0 42 chr4 36766802 36766850 -147521812 + L1MC4 LINE L1 6658 6703 -1339 647 289 57 30 chr4 36766869 36767049 -147521613 - L1MC4a LINE L1 -813 5333 5682 2385 74 0 13 chr4 36767049 36767359 -147521303 - AluY SINE Alu -5 306 1 647 289 57 30 chr4 36767359 36768058 -147520604 - L1MC4a LINE L1 -463 5683 5004 230 292 0 0 chr4 36768058 36768123 -147520539 + MIR SINE MIR 129 193 -69 356 278 22 0 chr4 36768840 36768930 -147519732 + MER5A DNA MER1_type 9 100 -89 214 283 53 80 chr4 36769228 36769341 -147519321 + L2 LINE L2 3204 3313 0 987 153 33 0 chr4 36769582 36769765 -147518897 - L1MB3 LINE L1 0 6183 5995 5671 58 25 37 chr4 36769765 36771114 -147517548 + SVA Other Other 1 1166 -220 738 237 138 22 chr4 36772210 36772434 -147516228 + MIR SINE MIR 9 258 -4 730 275 92 61 chr4 36772813 36773206 -147515456 - MLT1K LTR MaLR -19 569 165 6989 50 29 0 chr4 36773663 36774658 -147514004 - L1PA4 LINE L1 -4 6151 5151 195 42 0 0 chr4 36774760 36774784 -147513878 + (CA)n Simple_repeat Simple_repeat 1 24 0 1764 145 9 69 chr4 36776137 36776469 -147512193 + AluSx SINE Alu 1 312 0 964 192 145 41 chr4 36777299 36777664 -147510998 + LTR37A LTR ERV1 1 403 -23 2393 109 0 0 chr4 36777664 36777976 -147510686 - AluSx SINE Alu 0 312 1 2279 117 0 0 chr4 36777987 36778296 -147510366 - AluSx SINE Alu -3 309 1 343 360 18 6 chr4 36779341 36779505 -147509157 + LTR67 LTR ERVL 45 210 -347 2204 110 0 10 chr4 36779568 36779868 -147508794 + AluSq SINE Alu 2 298 -15 733 215 135 33 chr4 36779915 36780023 -147508639 - HsTC2 DNA Tc2 0 1898 1802 1856 168 9 25 chr4 36780023 36780339 -147508323 - AluJo SINE Alu -1 311 1 733 215 135 33 chr4 36780339 36780629 -147508033 - HsTC2 DNA Tc2 -96 1802 1282 290 219 0 31 chr4 36780628 36780692 -147507970 - HsTC2 DNA Tc2 -1757 141 80 * 904 245 103 57 chr4 36781383 36781925 -147506737 - MLT1L LTR MaLR -7 608 42 228 311 14 0 chr4 36782086 36782160 -147506502 + L1MEd LINE L1 550 624 -5495 369 0 0 0 chr4 36782187 36782228 -147506434 + (CA)n Simple_repeat Simple_repeat 2 42 0 312 70 0 0 chr4 36782275 36782318 -147506344 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1203 140 52 22 chr4 36782391 36782662 -147506000 + L1MA5A LINE L1 6018 6296 -1 230 268 32 89 chr4 36782746 36782992 -147505670 + L1MEd LINE L1 788 1019 -5100 631 289 98 68 chr4 36783056 36783631 -147505031 - L2 LINE L2 -73 3240 2661 23 33 0 0 chr4 36784045 36784075 -147504587 + AT_rich Low_complexity Low_complexity 1 30 0 366 281 131 20 chr4 36784292 36784491 -147504171 - L1ME3A LINE L1 -264 5906 5686 372 291 42 13 chr4 36784539 36784776 -147503886 - L1ME3A LINE L1 -580 5582 5339 234 180 0 0 chr4 36784836 36784913 -147503749 + A-rich Low_complexity Low_complexity 1 77 0 2174 138 31 17 chr4 36785030 36785385 -147503277 - THE1B LTR MaLR -4 360 1 464 328 97 22 chr4 36785419 36785859 -147502803 - L1ME3A LINE L1 -1039 5107 4515 378 291 54 41 chr4 36786002 36786297 -147502365 - L1ME3A LINE L1 -1983 4163 3865 1612 91 0 0 chr4 36786364 36786572 -147502090 + AluY SINE Alu 1 208 -103 4357 99 3 2 chr4 36787219 36787847 -147500815 - L1PB2 LINE L1 0 6151 5523 250 331 95 34 chr4 36788013 36788161 -147500501 - MIR3 SINE MIR -50 158 2 412 270 98 43 chr4 36789785 36789948 -147498714 - L2 LINE L2 0 3313 3142 255 253 0 72 chr4 36790037 36790120 -147498542 + L2 LINE L2 3196 3272 0 963 216 9 5 chr4 36793102 36793324 -147495338 + L1PA16 LINE L1 5944 6166 0 445 337 83 0 chr4 36793441 36793622 -147495040 + LTR33 LTR ERVL 2 197 -324 370 225 99 28 chr4 36793681 36793863 -147494799 + LTR33 LTR ERVL 327 521 0 285 357 32 22 chr4 36793909 36794094 -147494568 - MIR SINE MIR -54 208 19 310 311 161 22 chr4 36795400 36795580 -147493082 + L2 LINE L2 2428 2632 -682 1719 192 11 50 chr4 36795588 36795968 -147492694 - MLT1A1 LTR MaLR 0 365 1 3245 153 20 77 chr4 36796231 36796963 -147491699 - LTR8 LTR ERV1 0 691 1 1176 235 73 55 chr4 36797108 36797584 -147491078 + MLT1H LTR MaLR 62 546 -3 204 300 100 0 chr4 36797628 36797688 -147490974 - L2 LINE L2 -71 3201 3136 351 265 87 94 chr4 36797736 36798128 -147490534 - L2 LINE L2 -754 2560 2172 192 77 0 0 chr4 36800145 36800171 -147488491 + (T)n Simple_repeat Simple_repeat 1 26 0 198 287 57 82 chr4 36800201 36800323 -147488339 - L2 LINE L2 -15 3257 3139 271 371 48 30 chr4 36802009 36802176 -147486486 + L2 LINE L2 3041 3210 -62 413 218 129 0 chr4 36802211 36802312 -147486350 + MER45 DNA AcHobo 2 115 -63 256 235 0 0 chr4 36802443 36802494 -147486168 + MER45 DNA AcHobo 1531 1581 0 501 265 74 6 chr4 36802558 36802720 -147485942 + MIR SINE MIR 51 223 -39 1222 197 46 21 chr4 36802735 36803060 -147485602 + L1MA7 LINE L1 5866 6198 -93 272 242 16 0 chr4 36803395 36803457 -147485205 + (TCTG)n Simple_repeat Simple_repeat 4 66 0 417 54 0 0 chr4 36803752 36803808 -147484854 + (GA)n Simple_repeat Simple_repeat 1 56 0 1004 211 57 8 chr4 36804181 36804446 -147484216 + MER33 DNA MER1_type 1 278 -46 797 61 18 0 chr4 36804547 36804661 -147484001 + L1P1 LINE L1 1 116 -6030 * 33752 35 0 0 chr4 36804643 36809068 -147479594 + L1P1 LINE L1 1094 5517 -638 478 306 46 65 chr4 36809213 36809536 -147479126 + L2 LINE L2 2997 3313 0 183 333 25 25 chr4 36809568 36809649 -147479013 - MER5A DNA MER1_type -26 163 83 284 328 15 45 chr4 36809788 36809925 -147478737 + MER5B DNA MER1_type 36 179 -10 561 321 100 6 chr4 36810066 36810405 -147478257 - MLT1L LTR MaLR -26 589 219 254 28 0 28 chr4 36810758 36810794 -147477868 + (TG)n Simple_repeat Simple_repeat 2 36 0 2133 127 3 22 chr4 36811047 36811363 -147477299 + AluSx SINE Alu 1 310 -2 1681 138 190 11 chr4 36811504 36811867 -147476795 + MSTA LTR MaLR 1 428 0 3577 89 47 0 chr4 36814116 36814645 -147474017 - MER41A LTR ERV1 0 554 1 332 359 87 21 chr4 36815059 36815346 -147473316 + L2 LINE L2 2656 2961 -353 186 322 67 94 chr4 36815441 36815621 -147473041 + L2 LINE L2 3090 3264 -8 23 0 0 0 chr4 36815674 36815697 -147472965 + AT_rich Low_complexity Low_complexity 1 23 0 316 93 0 173 chr4 36815724 36815799 -147472863 - Charlie5 DNA MER1_type -28 2584 2523 372 199 286 19 chr4 36815878 36816084 -147472578 - L1MEd LINE L1 -5270 849 589 1827 137 31 53 chr4 36916220 36916541 -147372121 - THE1B LTR MaLR -49 315 2 637 266 13 25 chr4 36916541 36916699 -147371963 - MIR SINE MIR -103 159 4 288 323 50 0 chr4 36916951 36917050 -147371612 + L2 LINE L2 3202 3305 -8 263 276 11 11 chr4 36917799 36917886 -147370776 + MLT1K LTR MaLR 481 567 -21 273 315 54 0 chr4 36917907 36917999 -147370663 - L2 LINE L2 -10 3303 3207 279 247 56 0 chr4 36919160 36919249 -147369413 - Charlie1 DNA MER1_type -39 2722 2629 1992 156 0 0 chr4 36919252 36919541 -147369121 - AluSx SINE Alu -23 289 1 2030 119 0 28 chr4 36919802 36920122 -147368540 - AluSx SINE Alu -1 311 1 412 143 50 75 chr4 36921680 36921841 -147366821 + L1MC5 LINE L1 7547 7703 -258 1163 248 58 84 chr4 36922214 36922340 -147366322 - HAL1 LINE L1 -1 2506 2378 2314 222 86 3 chr4 36922340 36922907 -147365755 - MER90 LTR ERV1 0 614 1 1163 248 58 84 chr4 36922907 36923135 -147365527 - HAL1 LINE L1 -129 2378 2146 2450 73 0 13 chr4 36923135 36923450 -147365212 - AluY SINE Alu 0 311 1 1163 248 58 84 chr4 36923450 36923800 -147364862 - HAL1 LINE L1 -361 2146 1819 1237 94 0 85 chr4 36923938 36924139 -147364523 + AluSp SINE Alu 119 302 -11 218 103 35 35 chr4 36924355 36924413 -147364249 + CT-rich Low_complexity Low_complexity 3 60 0 413 344 106 9 chr4 36924428 36924646 -147364016 - MIR SINE MIR -1 261 23 325 252 171 0 chr4 36924729 36924840 -147363822 + MIR SINE MIR 91 220 -42 2103 134 6 10 chr4 36925213 36925526 -147363136 - AluSx SINE Alu 0 312 1 2925 185 28 3 chr4 36925789 36926388 -147362274 - L1MA8 LINE L1 -6 6285 5672 386 311 171 5 chr4 36926478 36926671 -147361991 - MIR SINE MIR -32 230 6 2173 119 0 0 chr4 36926885 36927212 -147361450 - AluSq SINE Alu 0 327 1 24 67 0 0 chr4 36927488 36927533 -147361129 + AT_rich Low_complexity Low_complexity 1 45 0 374 195 37 0 chr4 36927892 36927974 -147360688 - MER65A LTR ERV1 0 445 361 * 511 155 68 0 chr4 36927964 36928067 -147360595 + MER65A LTR ERV1 336 445 0 30 59 0 0 chr4 36928194 36928245 -147360417 + AT_rich Low_complexity Low_complexity 1 51 0 422 233 23 90 chr4 36928338 36928471 -147360191 - L2 LINE L2 0 3313 3190 22123 66 4 2 chr4 36928559 36932086 -147356576 + L1P LINE L1 547 4080 -2066 795 296 128 17 chr4 36932802 36933160 -147355502 + MLT1I LTR MaLR 3 400 -9 594 257 154 40 chr4 36933150 36933520 -147355142 + MLT1K LTR MaLR 167 578 -10 * 255 213 0 0 chr4 36935199 36935246 -147353416 - MLT1K LTR MaLR 0 588 542 315 344 200 0 chr4 36936584 36936814 -147351848 + L1MEd LINE L1 561 836 -5283 221 274 291 26 chr4 36937205 36937322 -147351340 - MIR SINE MIR -81 181 34 253 346 103 7 chr4 36937461 36937597 -147351065 - MIR SINE MIR -88 174 26 206 319 193 7 chr4 36937766 36937901 -147350761 + MIR SINE MIR 85 244 -18 395 217 121 19 chr4 36937905 36938112 -147350550 + MER113 DNA MER1_type? 69 296 -225 344 262 21 50 chr4 36939159 36939300 -147349362 + L1MC5 LINE L1 7646 7782 -179 365 233 167 0 chr4 36940234 36940354 -147348308 + MIR SINE MIR 110 249 -13 2302 116 0 0 chr4 36940674 36940984 -147347678 + AluSx SINE Alu 1 310 -2 295 297 171 9 chr4 36941378 36941489 -147347173 + MIR SINE MIR 1 129 -133 26 0 0 0 chr4 36941613 36941639 -147347023 + AT_rich Low_complexity Low_complexity 1 26 0 187 79 53 0 chr4 36941644 36941682 -147346980 + (TA)n Simple_repeat Simple_repeat 2 41 0 238 357 74 41 chr4 36941818 36942062 -147346600 - L2 LINE L2 -413 2901 2650 389 400 53 4 chr4 36942284 36942549 -147346113 + L2 LINE L2 2480 2757 -557 190 375 19 19 chr4 36943256 36943360 -147345302 + L2 LINE L2 3179 3282 -31 417 264 18 42 chr4 36943691 36943858 -147344804 + GA-rich Low_complexity Low_complexity 3 165 0 293 347 92 22 chr4 36945307 36945621 -147343041 + L2 LINE L2 2808 3143 -170 1036 292 102 43 chr4 36945669 36946250 -147342412 - L2 LINE L2 -3 3310 2695 3097 161 46 0 chr4 36946250 36946754 -147341908 - MER1A DNA MER1_type 0 527 1 1036 292 102 43 chr4 36946754 36946820 -147341842 - L2 LINE L2 -618 2695 2634 622 277 16 27 chr4 36947670 36947854 -147340808 - MIR3 SINE MIR -8 200 19 917 325 58 25 chr4 36947960 36948537 -147340125 + L1MCa LINE L1 24 597 -5826 2068 250 51 30 chr4 36948684 36949489 -147339173 + L1MCa LINE L1 885 1712 -4889 1707 158 30 0 chr4 36949569 36949873 -147338789 + L1MC3 LINE L1 7257 7569 -216 404 20 0 0 chr4 36949882 36949931 -147338731 - MADE1 DNA Mariner -4 76 28 895 207 0 0 chr4 36949954 36950133 -147338529 + L1MC3 LINE L1 7575 7753 -32 305 226 58 51 chr4 36950136 36950273 -147338389 - MER113 DNA MER1_type? -383 138 1 254 310 35 0 chr4 36950811 36950898 -147337764 + MER117 DNA MER1_type 3 92 -105 210 248 248 80 chr4 36951858 36951971 -147336691 - L2 LINE L2 0 3272 3141 696 157 25 0 chr4 36952817 36952938 -147335724 - MER65A LTR ERV1 0 445 322 2442 259 103 60 chr4 36953038 36953667 -147334995 - HAL1 LINE L1 -814 1693 1093 2423 77 0 0 chr4 36953667 36953966 -147334696 + AluY SINE Alu 1 299 -12 2442 259 103 60 chr4 36953966 36954863 -147333799 - HAL1 LINE L1 -1414 1093 100 25 31 0 0 chr4 36955001 36955033 -147333629 + AT_rich Low_complexity Low_complexity 1 32 0 370 214 86 17 chr4 36957999 36958116 -147330546 - L1MC5 LINE L1 -108 7853 7729 189 0 0 0 chr4 36958614 36958635 -147330027 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 552 307 95 22 chr4 36959141 36959372 -147329290 + L3 LINE CR1 1055 1302 -275 1714 157 0 62 chr4 36960359 36960683 -147327979 + AluJb SINE Alu 1 304 -8 198 0 0 0 chr4 36960717 36960739 -147327923 + (T)n Simple_repeat Simple_repeat 1 22 0 399 323 23 0 chr4 36960798 36960928 -147327734 - MIR SINE MIR -12 250 118 639 204 57 40 chr4 36961348 36961524 -147327138 + MER3 DNA MER1_type 1 179 -30 28 48 0 0 chr4 36961842 36961884 -147326778 + AT_rich Low_complexity Low_complexity 1 42 0 2093 75 0 0 chr4 36961904 36962169 -147326493 - AluY SINE Alu -12 299 35 220 325 8 79 chr4 36963207 36963306 -147325356 - L2 LINE L2 -8 3264 3174 1078 212 31 25 chr4 36963306 36963627 -147325035 + MER33 DNA MER1_type 1 323 -1 220 325 8 79 chr4 36963627 36963653 -147325009 - L2 LINE L2 -98 3174 3148 685 270 99 5 chr4 36963990 36964201 -147324461 - MIR SINE MIR -31 231 1 2696 39 0 0 chr4 36964571 36964882 -147323780 - AluY SINE Alu 0 311 1 650 289 111 40 chr4 36964897 36965267 -147323395 + L2 LINE L2 2918 3313 0 476 214 55 53 chr4 36966065 36966264 -147322398 - MER106B DNA MER1_type -36 1023 1 205 298 181 32 chr4 36966271 36966365 -147322297 + L2 LINE L2 3164 3271 -1 225 266 64 53 chr4 36967190 36967284 -147321378 - LTR16A1 LTR ERVL -112 345 251 1736 153 29 77 chr4 36967420 36967799 -147320863 - MLT1B LTR MaLR 0 390 30 691 161 0 51 chr4 36968115 36968252 -147320410 - FLAM_C SINE Alu -3 130 1 471 395 43 0 chr4 36968967 36969200 -147319462 + L2 LINE L2 2560 2802 -512 404 263 23 0 chr4 36969246 36969379 -147319283 + Charlie4 DNA MER1_type 1820 1955 -6 1631 81 8 92 chr4 36969390 36969651 -147319011 + AluSq SINE Alu 1 239 -74 381 231 45 126 chr4 36969689 36969888 -147318774 + L2 LINE L2 3094 3276 -37 2136 109 13 0 chr4 36970101 36970405 -147318257 - L1PA16 LINE L1 -172 5994 5687 217 146 0 36 chr4 36970527 36970582 -147318080 + (GAAAA)n Simple_repeat Simple_repeat 3 55 0 186 43 0 0 chr4 36971698 36971721 -147316941 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 219 234 62 16 chr4 36972006 36972070 -147316592 + L2 LINE L2 3205 3271 -1 22 56 0 0 chr4 36972109 36972145 -147316517 + AT_rich Low_complexity Low_complexity 1 36 0 782 278 137 30 chr4 36972622 36973236 -147315426 - L2 LINE L2 -90 3223 2550 325 317 18 35 chr4 36974638 36974865 -147313797 + L1MEd LINE L1 1018 1240 -4879 235 286 87 61 chr4 36974928 36975159 -147313503 + L1M1 LINE L1 2708 2944 -4621 192 406 104 10 chr4 36976189 36976381 -147312281 - L2 LINE L2 -189 3083 2874 315 104 0 0 chr4 36976429 36976477 -147312185 + (CA)n Simple_repeat Simple_repeat 1 48 0 332 284 67 32 chr4 36977057 36977134 -147311528 + L1MEd LINE L1 789 862 -5257 2574 139 5 31 chr4 36977134 36977579 -147311083 + Tigger2a DNA MER2_type 1 433 -1 332 284 67 32 chr4 36977579 36977786 -147310876 + L1MEd LINE L1 862 1106 -5013 341 317 34 53 chr4 36978191 36978399 -147310263 - HAL1b LINE L1 -868 480 277 29 0 0 0 chr4 36979740 36979769 -147308893 + AT_rich Low_complexity Low_complexity 1 29 0 38 22 0 0 chr4 36980268 36980313 -147308349 + AT_rich Low_complexity Low_complexity 1 45 0 202 250 48 48 chr4 36981305 36981409 -147307253 - L3b LINE CR1 -182 1401 1298 457 281 56 75 chr4 36982037 36982564 -147306098 + L2 LINE L2 2513 3149 -164 1877 155 0 7 chr4 36982870 36983173 -147305489 + AluJb SINE Alu 1 301 -11 2154 164 40 26 chr4 36984333 36984753 -147303909 + MSTB LTR MaLR 1 426 0 243 0 0 0 chr4 36985912 36985939 -147302723 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 1965 126 38 7 chr4 36985967 36986260 -147302402 + AluSx SINE Alu 1 302 -10 1958 173 50 27 chr4 36986325 36986765 -147301897 + L1MB2 LINE L1 5720 6169 -2 338 326 53 0 chr4 36986981 36987076 -147301586 + MIR SINE MIR 48 147 -61 741 297 5 0 chr4 36987464 36987659 -147301003 + MIR SINE MIR 56 251 -11 189 309 148 12 chr4 36988483 36988564 -147300098 - L2 LINE L2 -48 3224 3133 880 171 46 78 chr4 36989631 36989796 -147298866 - MER65A LTR ERV1 -235 210 52 2270 85 0 22 chr4 36989796 36990113 -147298549 - AluY SINE Alu -1 310 1 880 171 46 78 chr4 36990113 36990164 -147298498 - MER65A LTR ERV1 -393 52 1 2284 229 70 8 chr4 36990165 36990762 -147297900 - MER65A-int LTR ERV1 -1 4870 4237 1003 247 114 0 chr4 36990762 36991025 -147297637 - MER65A-int LTR ERV1 -739 4132 3840 344 203 0 0 chr4 36991089 36991148 -147297514 - MER31-int LTR ERV1 -525 4411 4353 886 153 94 20 chr4 36991225 36991428 -147297234 - MER31-int LTR ERV1 -1145 3791 3574 524 269 117 51 chr4 36991692 36991949 -147296713 - MER102a DNA MER1_type -1 329 56 359 314 10 10 chr4 36992258 36992360 -147296302 + L2 LINE L2 3169 3270 -43 884 269 106 51 chr4 36992860 36993452 -147295210 - MER65-int LTR ERV1 -2746 5374 4750 24 96 0 0 chr4 36993454 36993527 -147295135 + AT_rich Low_complexity Low_complexity 1 73 0 306 177 85 0 chr4 36993640 36993804 -147294858 + (TA)n Simple_repeat Simple_repeat 2 179 0 33 56 0 0 chr4 36993804 36993858 -147294804 + AT_rich Low_complexity Low_complexity 1 54 0 1109 180 60 88 chr4 36993886 36994365 -147294297 - MER65-int LTR ERV1 -2096 4235 3730 565 216 34 49 chr4 36994440 36994644 -147294018 - MER65-int LTR ERV1 -2861 3737 3537 5902 185 70 81 chr4 36994721 36996227 -147292435 - MER65-int LTR ERV1 -2378 2493 1763 267 103 0 0 chr4 36996227 36996266 -147292396 + (CA)n Simple_repeat Simple_repeat 2 40 0 5902 185 70 81 chr4 36996266 36997434 -147291228 - MER65-int LTR ERV1 -3108 1763 583 2167 96 0 3 chr4 36997434 36997737 -147290925 - AluY SINE Alu 0 304 3 4097 99 83 35 chr4 36997904 36999210 -147289452 + pTR5 LTR ERV1 743 2468 0 661 220 60 56 chr4 36999213 36999463 -147289199 - MER65-int LTR ERV1 -4560 311 61 2226 163 11 6 chr4 36999768 37000131 -147288531 - MLT1A1 LTR MaLR 0 365 1 359 336 73 39 chr4 37000759 37000991 -147287671 + MIR SINE MIR 20 259 -3 309 320 25 16 chr4 37001115 37001237 -147287425 + MIR3 SINE MIR 85 207 -1 1837 199 3 3 chr4 37001700 37002036 -147286626 - MER7A DNA MER2_type 0 346 13 29 28 0 0 chr4 37002048 37002084 -147286578 + AT_rich Low_complexity Low_complexity 1 36 0 6386 126 9 26 chr4 37002090 37003207 -147285455 - L1PB1 LINE L1 0 6151 5069 2000 152 3 0 chr4 37003207 37003504 -147285158 - AluSx SINE Alu -12 300 3 6386 126 9 26 chr4 37003504 37003801 -147284861 - L1PB1 LINE L1 -1082 5069 4768 234 313 61 10 chr4 37004373 37004472 -147284190 - MIR SINE MIR -6 256 153 413 281 118 0 chr4 37004570 37004705 -147283957 + MIR SINE MIR 34 184 -78 26 30 0 0 chr4 37004741 37004774 -147283888 + AT_rich Low_complexity Low_complexity 1 33 0 932 252 51 13 chr4 37005181 37005415 -147283247 - MIR SINE MIR 0 262 20 651 281 41 21 chr4 37006306 37006548 -147282114 + MIR SINE MIR 3 249 -13 2215 105 3 0 chr4 37006655 37006950 -147281712 + AluSp SINE Alu 1 296 -17 24 0 0 0 chr4 37007116 37007140 -147281522 + AT_rich Low_complexity Low_complexity 1 24 0 249 139 0 0 chr4 37007420 37007463 -147281199 + (GA)n Simple_repeat Simple_repeat 2 44 0 9550 42 6 1 chr4 37007925 37009881 -147278781 + L1PA5 LINE L1 4190 6152 -2 202 319 96 11 chr4 37010602 37010696 -147277966 + L2 LINE L2 2887 2988 -284 408 299 120 22 chr4 37011883 37012067 -147276595 - MIR SINE MIR -46 216 15 955 213 30 61 chr4 37012205 37012468 -147276194 + MLT1E2 LTR MaLR 1 255 -371 448 213 96 0 chr4 37012502 37012596 -147276066 - MER63 DNA MER1_type -333 729 1 188 309 18 0 chr4 37012622 37012677 -147275985 - MIR SINE MIR -118 144 89 516 279 79 57 chr4 37013274 37013539 -147275123 - LTR33 LTR ERVL -234 287 17 200 214 54 36 chr4 37015151 37015207 -147273455 + MIR SINE MIR 96 152 -56 436 238 222 26 chr4 37015362 37015551 -147273111 + LTR50 LTR ERVL 65 290 -505 1294 177 111 58 chr4 37015659 37016021 -147272641 - MLT1B LTR MaLR 0 390 10 505 310 141 11 chr4 37016006 37016354 -147272308 + LTR50 LTR ERVL 394 786 -9 * 1767 298 114 46 chr4 37016366 37017314 -147271348 - L2 LINE L2 -316 2997 1991 1215 119 4 123 chr4 37017335 37017612 -147271050 + Tigger4(Zombi) DNA MER2_type 2488 2731 0 534 243 22 132 chr4 37017901 37018173 -147270489 - MIR SINE MIR -3 259 18 284 279 96 29 chr4 37019208 37019312 -147269350 - L2 LINE L2 -2 3270 3160 355 340 9 56 chr4 37019312 37019544 -147269118 - MIR SINE MIR -13 249 29 596 274 178 8 chr4 37020108 37020418 -147268244 + MLT2E LTR ERVL 15 422 -206 242 238 16 0 chr4 37020469 37020532 -147268130 + MLT2E LTR ERVL 533 596 -32 22 35 0 0 chr4 37021036 37021065 -147267597 + AT_rich Low_complexity Low_complexity 1 29 0 2679 187 29 13 chr4 37021304 37021919 -147266743 - L1MC3 LINE L1 -1 7784 7160 1788 175 19 0 chr4 37021920 37022228 -147266434 - MLT1C LTR MaLR -1 466 153 240 211 40 23 chr4 37022622 37022797 -147265865 + (TA)n Simple_repeat Simple_repeat 1 178 0 2235 143 14 6 chr4 37023744 37024095 -147264567 - MLT1A1 LTR MaLR -8 357 4 355 253 212 54 chr4 37026728 37026969 -147261693 + L2 LINE L2 3033 3311 -2 343 264 0 22 chr4 37027105 37027196 -147261466 + L2 LINE L2 3215 3303 -10 184 326 37 74 chr4 37027622 37027757 -147260905 - L2 LINE L2 -211 3061 2932 7999 173 129 42 chr4 37027777 37028975 -147259687 - L1MCa LINE L1 -4250 2176 1084 1852 166 41 12 chr4 37028975 37029319 -147259343 - L1PA15 LINE L1 -1 6164 5811 7999 173 129 42 chr4 37029319 37029783 -147258879 - L1MCa LINE L1 -5342 1084 662 2205 110 72 20 chr4 37029783 37030128 -147258534 + THE1B LTR MaLR 1 363 -1 7999 173 129 42 chr4 37030128 37030458 -147258204 - L1MCa LINE L1 -5764 662 9 205 110 98 24 chr4 37031046 37031128 -147257534 + (AATAG)n Simple_repeat Simple_repeat 3 90 0 323 336 83 29 chr4 37031454 37031766 -147256896 - MER102a DNA MER1_type 0 330 2 1080 231 87 73 chr4 37032046 37032962 -147255700 + L1ME2 LINE L1 5122 6087 -77 297 268 12 0 chr4 37033002 37033084 -147255578 + (TA)n Simple_repeat Simple_repeat 2 84 0 404 253 105 11 chr4 37033110 37033300 -147255362 + L1ME3A LINE L1 5743 5950 -220 191 265 41 0 chr4 37033522 37033571 -147255091 - MIR SINE MIR -15 247 197 198 0 0 0 chr4 37033578 37033600 -147255062 + (TG)n Simple_repeat Simple_repeat 2 23 0 3634 138 160 6 chr4 37033615 37034662 -147254000 + Tigger3(Golem) DNA MER2_type 21 3025 -4 495 259 38 25 chr4 37034703 37034861 -147253801 - MIR SINE MIR -95 167 8 213 297 161 0 chr4 37035224 37035342 -147253320 - MIR SINE MIR -72 190 54 326 286 48 42 chr4 37035469 37035658 -147253004 + MIR SINE MIR 73 262 0 27 81 0 0 chr4 37035771 37035833 -147252829 + AT_rich Low_complexity Low_complexity 1 62 0 987 225 87 58 chr4 37036895 37037068 -147251594 + MLT1B LTR MaLR 1 168 -260 189 0 0 0 chr4 37037068 37037089 -147251573 + (TC)n Simple_repeat Simple_repeat 1 21 0 987 225 87 58 chr4 37037089 37037286 -147251376 + MLT1B LTR MaLR 168 428 0 22 0 0 0 chr4 37037398 37037420 -147251242 + AT_rich Low_complexity Low_complexity 1 22 0 294 29 0 0 chr4 37037566 37037601 -147251061 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 23 92 0 0 chr4 37038046 37038111 -147250551 + AT_rich Low_complexity Low_complexity 1 65 0 1838 170 140 45 chr4 37039642 37040113 -147248549 + MER34 LTR ERV1 27 542 0 318 279 147 7 chr4 37040449 37040585 -147248077 + MIR SINE MIR 13 167 -95 264 330 36 36 chr4 37040702 37040814 -147247848 - L2 LINE L2 -22 3291 3180 257 356 76 8 chr4 37041478 37041596 -147247066 - L2 LINE L2 -9 3263 3138 1252 226 50 47 chr4 37043193 37043658 -147245004 - LTR37B LTR ERV1 -2 466 1 276 210 284 0 chr4 37043950 37044031 -147244631 + L1ME3A LINE L1 6059 6162 -8 2118 106 7 13 chr4 37044403 37044731 -147243931 + AluSx SINE Alu 1 312 0 1273 249 21 42 chr4 37045176 37045558 -147243104 + MLT1A2 LTR MaLR 1 374 0 280 275 188 31 chr4 37045558 37045718 -147242944 + L2 LINE L2 2553 2737 -577 470 302 84 19 chr4 37046905 37047120 -147241542 + MIR SINE MIR 24 252 -10 204 40 0 0 chr4 37048081 37048106 -147240556 + (A)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr4 37049042 37049065 -147239597 + GC_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr4 37049212 37049251 -147239411 + GC_rich Low_complexity Low_complexity 1 39 0 1855 136 10 10 chr4 37049849 37050143 -147238519 - AluSx SINE Alu -14 298 5 21 0 0 0 chr4 37050150 37050171 -147238491 + AT_rich Low_complexity Low_complexity 1 21 0 1963 135 0 22 chr4 37050686 37050997 -147237665 - AluSx SINE Alu -8 304 1 821 238 182 25 chr4 37051661 37051947 -147236715 + HsTC2 DNA Tc2 6 336 -1562 267 156 26 52 chr4 37051934 37052011 -147236651 + HsTC2 DNA Tc2 1706 1780 -118 * 33 0 0 0 chr4 37052012 37052045 -147236617 + AT_rich Low_complexity Low_complexity 1 33 0 4901 148 23 31 chr4 37052147 37053106 -147235556 + L1PA16 LINE L1 5214 6165 -1 331 266 146 82 chr4 37053589 37053787 -147234875 + MER102b DNA MER1_type 1 228 -1200 2044 121 7 17 chr4 37053787 37054084 -147234578 + AluSx SINE Alu 1 294 -18 331 266 146 82 chr4 37054084 37054201 -147234461 + MER102b DNA MER1_type 228 336 -5 325 281 17 34 chr4 37054568 37054746 -147233916 + (TA)n Simple_repeat Simple_repeat 1 175 0 331 331 75 50 chr4 37055281 37055612 -147233050 - L2 LINE L2 -212 3060 2726 25 65 0 0 chr4 37058013 37058059 -147230603 + AT_rich Low_complexity Low_complexity 1 46 0 228 35 0 0 chr4 37058087 37058116 -147230546 + (CA)n Simple_repeat Simple_repeat 2 30 0 2286 91 10 10 chr4 37058126 37058433 -147230229 - AluSc SINE Alu -2 307 1 579 287 106 21 chr4 37058540 37058728 -147229934 - MIR SINE MIR -11 251 48 384 242 0 11 chr4 37059728 37059819 -147228843 - MER103 DNA DNA -75 91 2 198 289 52 62 chr4 37060460 37060557 -147228105 - MIR SINE MIR 0 262 167 21 36 0 0 chr4 37060567 37060595 -147228067 + AT_rich Low_complexity Low_complexity 1 28 0 1634 182 3 35 chr4 37060619 37060937 -147227725 - AluJo SINE Alu -4 308 1 310 273 20 40 chr4 37060940 37061039 -147227623 - MIR SINE MIR -115 147 51 235 227 196 0 chr4 37061101 37061198 -147227464 - MLT1J LTR MaLR -18 493 378 1388 202 47 16 chr4 37061226 37061543 -147227119 + MLT1A1 LTR MaLR 26 352 -13 325 337 0 0 chr4 37061549 37061724 -147226938 + (CAGC)n Simple_repeat Simple_repeat 2 176 0 224 359 6 0 chr4 37061800 37061967 -147226695 + (CAGC)n Simple_repeat Simple_repeat 2 169 0 749 312 52 55 chr4 37061969 37062265 -147226397 - MLT1J LTR MaLR -185 326 30 487 57 57 0 chr4 37062265 37062353 -147226309 + (TA)n Simple_repeat Simple_repeat 2 94 0 749 312 52 55 chr4 37062353 37062383 -147226279 - MLT1J LTR MaLR -481 30 1 1107 116 32 21 chr4 37062703 37062892 -147225770 + L1PA10 LINE L1 5978 6168 0 2264 118 0 9 chr4 37064249 37064564 -147224098 + AluSx SINE Alu 1 312 0 1157 259 56 38 chr4 37065183 37065730 -147222932 - MLT2E LTR ERVL 0 628 25 221 252 189 27 chr4 37065781 37065892 -147222770 + MIR SINE MIR 131 259 -3 748 320 20 70 chr4 37065974 37066462 -147222200 + LTR16B LTR ERVL 1 464 0 396 114 11 34 chr4 37067361 37067449 -147221213 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 23 0 0 0 chr4 37067767 37067790 -147220872 + AT_rich Low_complexity Low_complexity 1 23 0 795 228 0 6 chr4 37067866 37068033 -147220629 + FRAM SINE Alu 1 166 0 288 244 24 37 chr4 37068226 37068308 -147220354 + MIR3 SINE MIR 119 199 -9 190 197 0 171 chr4 37069107 37069183 -147219479 + L2 LINE L2 3246 3308 -5 228 35 0 0 chr4 37069496 37069525 -147219137 + (A)n Simple_repeat Simple_repeat 1 29 0 1605 162 54 0 chr4 37072426 37072704 -147215958 + AluSx SINE Alu 1 293 -19 742 121 0 10 chr4 37074040 37074300 -147214362 + AluSx SINE Alu 1 356 0 21 36 0 0 chr4 37074844 37074872 -147213790 + AT_rich Low_complexity Low_complexity 1 28 0 241 179 60 37 chr4 37075164 37075298 -147213364 + (TA)n Simple_repeat Simple_repeat 1 137 0 226 306 187 15 chr4 37076245 37076379 -147212283 + MER5A DNA MER1_type 33 189 0 2203 110 13 10 chr4 37076389 37076699 -147211963 - AluSx SINE Alu 0 312 2 1544 201 0 20 chr4 37077273 37077567 -147211095 - AluJo SINE Alu -24 288 1 3066 143 12 4 chr4 37078410 37078898 -147209764 - LTR38 LTR ERV1 -64 492 1 1971 225 166 0 chr4 37079896 37080478 -147208184 - L1MD3 LINE L1 -2 7993 5676 198 118 0 0 chr4 37084681 37084715 -147203947 + (TG)n Simple_repeat Simple_repeat 2 35 0 1694 117 3 65 chr4 37084834 37085125 -147203537 + AluSc SINE Alu 1 273 -36 216 0 0 0 chr4 37085125 37085149 -147203513 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 510 286 74 11 chr4 37085149 37085324 -147203338 + MER5A DNA MER1_type 3 188 -1 3872 121 11 28 chr4 37086245 37086864 -147201798 - MER4B LTR ERV1 0 610 2 281 281 10 21 chr4 37087764 37087860 -147200802 - L1ME4a LINE L1 -63 6058 5964 272 313 16 39 chr4 37088117 37088299 -147200363 + (CA)n Simple_repeat Simple_repeat 2 179 0 213 261 15 0 chr4 37088393 37088458 -147200204 + (CA)n Simple_repeat Simple_repeat 1 66 0 494 305 117 14 chr4 37088798 37089080 -147199582 + LTR33 LTR ERVL 210 520 -1 571 229 40 49 chr4 37089232 37089455 -147199207 - L1ME4a LINE L1 -195 5975 5755 243 0 0 0 chr4 37089876 37089903 -147198759 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 1664 177 0 7 chr4 37089903 37090174 -147198488 - AluJb SINE Alu -25 287 19 225 266 11 53 chr4 37090377 37090471 -147198191 - MER20B DNA MER1_type -629 154 65 206 298 70 76 chr4 37090986 37091144 -147197518 + L2 LINE L2 3130 3286 -27 437 351 26 7 chr4 37091410 37091561 -147197101 + L2 LINE L2 3115 3268 -4 3002 186 70 5 chr4 37091687 37092301 -147196361 + LTR65 LTR ERV1 8 661 -8 455 255 152 7 chr4 37092331 37092476 -147196186 - MER5B DNA MER1_type 0 178 13 426 329 136 5 chr4 37094209 37094422 -147194240 + MLT1I LTR MaLR 79 319 -90 275 271 147 0 chr4 37094728 37094857 -147193805 - MIR SINE MIR -13 249 102 186 143 0 0 chr4 37094905 37094940 -147193722 - L2 LINE L2 -4 3309 3275 267 288 100 38 chr4 37095153 37095313 -147193349 + MLT1E LTR MaLR 157 326 -298 630 180 0 47 chr4 37095334 37095462 -147193200 - FLAM_C SINE Alu -17 126 5 1002 280 29 13 chr4 37095474 37095785 -147192877 + MLT1E LTR MaLR 277 592 -1 231 36 0 0 chr4 37097045 37097073 -147191589 + (GCTTG)n Simple_repeat Simple_repeat 5 32 0 1592 121 136 11 chr4 37097165 37097320 -147191342 - AluSg SINE Alu -13 297 163 243 88 0 0 chr4 37097320 37097354 -147191308 + (TG)n Simple_repeat Simple_repeat 1 34 0 1592 121 136 11 chr4 37097354 37097462 -147191200 - AluSg SINE Alu -147 163 1 240 305 35 85 chr4 37097600 37097741 -147190921 + MIR3 SINE MIR 21 154 -54 672 237 87 0 chr4 37098140 37098313 -147190349 - MER5A DNA MER1_type 0 189 2 751 229 123 20 chr4 37098359 37098612 -147190050 + Charlie4a DNA MER1_type 21 299 -209 246 291 99 66 chr4 37148626 37148808 -147139854 - L1MEc LINE L1 -6010 386 199 1388 207 27 27 chr4 37148808 37149103 -147139559 - AluJo SINE Alu -7 305 11 467 277 31 6 chr4 37149119 37149278 -147139384 - L1MEc LINE L1 -6192 204 42 12252 221 29 16 chr4 37149820 37154145 -147134517 - L1PA16 LINE L1 -8 6158 1789 26 30 0 0 chr4 37154252 37154285 -147134377 + AT_rich Low_complexity Low_complexity 1 33 0 1810 158 0 7 chr4 37154481 37154766 -147133896 + AluSx SINE Alu 1 283 -29 277 264 40 16 chr4 37155103 37155228 -147133434 - L1ME4a LINE L1 -21 6100 5973 230 286 50 91 chr4 37156709 37156807 -147131855 + HAL1 LINE L1 1331 1431 -1076 3628 108 15 0 chr4 37156807 37157337 -147131325 + L1PA13 LINE L1 5625 6162 -1 230 286 50 91 chr4 37157337 37157458 -147131204 + HAL1 LINE L1 1431 1541 -966 32 0 0 0 chr4 37157518 37157550 -147131112 + AT_rich Low_complexity Low_complexity 1 32 0 274 125 167 0 chr4 37157550 37157622 -147131040 - L1MA7 LINE L1 -1 6290 6207 3956 26 0 0 chr4 37157962 37158421 -147130241 + L1PA3 LINE L1 5694 6152 -3 1493 335 111 25 chr4 37158522 37159870 -147128792 + L2 LINE L2 1843 3312 -1 203 294 24 24 chr4 37160051 37160136 -147128526 + MIR SINE MIR 157 241 -21 2878 281 142 49 chr4 37161470 37161660 -147127002 - L1MD3 LINE L1 -10 7985 7814 2130 108 7 13 chr4 37161660 37161967 -147126695 - AluSp SINE Alu -8 305 1 2878 281 142 49 chr4 37161967 37162129 -147126533 - L1MD3 LINE L1 -181 7814 7668 1851 141 5 83 chr4 37162129 37162504 -147126158 + MER7A DNA MER2_type 2 345 -1 2878 281 142 49 chr4 37162504 37163369 -147125293 - L1MD3 LINE L1 -327 7668 6654 479 230 60 0 chr4 37163587 37163687 -147124975 + MER5A DNA MER1_type 4 109 -80 413 104 52 13 chr4 37164093 37164170 -147124492 - MADE1 DNA Mariner 0 80 1 21 0 0 0 chr4 37164260 37164281 -147124381 + AT_rich Low_complexity Low_complexity 1 21 0 2531 106 14 0 chr4 37164371 37164730 -147123932 + THE1B LTR MaLR 1 364 0 9298 137 36 17 chr4 37164731 37166280 -147122382 + THE1B-int LTR MaLR 2 1579 -1 2573 115 3 6 chr4 37166281 37166646 -147122016 + THE1B LTR MaLR 1 364 0 278 269 30 0 chr4 37166657 37166724 -147121938 - MIR SINE MIR -96 166 98 378 276 103 26 chr4 37166849 37167005 -147121657 + MIR SINE MIR 20 187 -75 374 229 144 8 chr4 37167971 37168089 -147120573 + MIR SINE MIR 33 166 -96 638 257 117 31 chr4 37168100 37168357 -147120305 + L2 LINE L2 3017 3295 -18 33 0 0 0 chr4 37168386 37168419 -147120243 + AT_rich Low_complexity Low_complexity 1 33 0 568 362 27 12 chr4 37168792 37169049 -147119613 - MIR SINE MIR 0 262 2 396 310 82 12 chr4 37169437 37169608 -147119054 - MIR SINE MIR -74 188 6 2205 107 0 10 chr4 37169894 37170193 -147118469 + AluY SINE Alu 1 296 -15 1091 235 94 11 chr4 37170243 37170644 -147118018 - MER57A LTR ERV1 -2 401 3 215 200 0 29 chr4 37171291 37171361 -147117301 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 188 292 62 0 chr4 37173431 37173496 -147115166 + MIR SINE MIR 124 192 -70 22 0 0 0 chr4 37173538 37173560 -147115102 + AT_rich Low_complexity Low_complexity 1 22 0 2198 102 0 0 chr4 37173561 37173856 -147114806 - AluY SINE Alu -16 295 1 478 291 54 41 chr4 37173923 37174218 -147114444 + L1ME3A LINE L1 3865 4163 -1983 227 291 75 8 chr4 37174361 37174495 -147114167 + L1ME3A LINE L1 4515 4657 -1489 253 336 52 9 chr4 37174590 37174801 -147113861 + L1ME3A LINE L1 4888 5107 -1039 2182 138 31 14 chr4 37174835 37175189 -147113473 + THE1B LTR MaLR 1 360 -4 204 284 0 0 chr4 37175307 37175381 -147113281 + (TA)n Simple_repeat Simple_repeat 2 75 0 * 234 180 0 0 chr4 37175334 37175384 -147113278 + T-rich Low_complexity Low_complexity 3 52 0 423 284 69 21 chr4 37175398 37175704 -147112958 + L1ME3A LINE L1 5288 5582 -580 438 280 130 34 chr4 37175729 37175968 -147112694 + L1ME3A LINE L1 5686 5947 -215 23 33 0 0 chr4 37176145 37176175 -147112487 + AT_rich Low_complexity Low_complexity 1 30 0 615 289 98 68 chr4 37176589 37177164 -147111498 + L2 LINE L2 2661 3240 -73 288 248 47 69 chr4 37177188 37177489 -147111173 - L1MCc LINE L1 -4967 1456 1391 1278 141 52 19 chr4 37177558 37177828 -147110834 - L1MA5A LINE L1 -1 6296 6018 312 70 0 0 chr4 37177901 37177944 -147110718 + (TATG)n Simple_repeat Simple_repeat 2 44 0 369 0 0 0 chr4 37177991 37178032 -147110630 + (TG)n Simple_repeat Simple_repeat 2 42 0 253 311 14 0 chr4 37178059 37178133 -147110529 - L1MCc LINE L1 -5495 1436 1362 2094 102 10 10 chr4 37178656 37178961 -147109701 + AluSx SINE Alu 6 310 -2 22 35 0 0 chr4 37179331 37179360 -147109302 + AT_rich Low_complexity Low_complexity 1 29 0 258 325 12 0 chr4 37179537 37179620 -147109042 - MIR3 SINE MIR -1 207 124 503 16 16 0 chr4 37180291 37180355 -147108307 + (CA)n Simple_repeat Simple_repeat 2 66 0 2265 105 0 0 chr4 37180585 37180881 -147107781 + AluSg SINE Alu 1 296 -14 856 264 33 7 chr4 37181022 37181295 -147107367 + MER93a LTR ERV1 120 399 -3 341 328 18 35 chr4 37181433 37181604 -147107058 + MER5A DNA MER1_type 11 178 -11 390 313 14 14 chr4 37181436 37181583 -147107079 - MER5B DNA MER1_type -1 177 31 271 316 58 22 chr4 37181605 37181744 -147106918 + MIR SINE MIR 96 239 -23 212 338 0 0 chr4 37181786 37181860 -147106802 + (TTA)n Simple_repeat Simple_repeat 1 74 0 313 259 157 42 chr4 37181865 37182151 -147106511 + L1ME4a LINE L1 5765 6083 -38 951 129 29 0 chr4 37183881 37184020 -147104642 + MER30 DNA MER1_type 87 229 -1 267 103 0 0 chr4 37184347 37184386 -147104276 + (TA)n Simple_repeat Simple_repeat 2 40 0 1967 125 0 20 chr4 37184647 37184950 -147103712 - AluSx SINE Alu -7 305 9 1193 261 43 10 chr4 37185504 37185953 -147102709 - MER90 LTR ERV1 -4 610 106 1329 178 30 11 chr4 37185955 37186219 -147102443 - THE1C LTR MaLR 0 375 107 1490 62 54 120 chr4 37186219 37186495 -147102167 + MLT2A2 LTR ERVL 1 258 -195 348 103 0 0 chr4 37186495 37186553 -147102109 + (TA)n Simple_repeat Simple_repeat 2 59 0 315 190 0 100 chr4 37186561 37186661 -147102001 + L1MC4 LINE L1 6614 6703 -1339 394 91 0 0 chr4 37186692 37186747 -147101915 + MLT2A2 LTR ERVL 399 453 0 41713 88 17 2 chr4 37186747 37192317 -147096345 + HERVL-A2-A1 LTR ERVL 1 5654 0 2725 101 23 8 chr4 37192317 37192713 -147095949 + MLT2A1 LTR ERVL 3 404 -40 414 195 0 0 chr4 37192715 37192802 -147095860 + (CATA)n Simple_repeat Simple_repeat 2 88 0 260 149 0 54 chr4 37192810 37192884 -147095778 + (TA)n Simple_repeat Simple_repeat 2 71 0 319 81 0 32 chr4 37192896 37192958 -147095704 + (TA)n Simple_repeat Simple_repeat 2 61 0 565 167 79 26 chr4 37192972 37193086 -147095576 - MSTA LTR MaLR -255 120 1 450 176 0 44 chr4 37193093 37193184 -147095478 - MER90 LTR ERV1 -525 89 3 303 191 0 0 chr4 37193332 37193400 -147095262 + GA-rich Low_complexity Low_complexity 2 69 0 2385 99 3 0 chr4 37193405 37193717 -147094945 + AluSq SINE Alu 1 313 0 1127 291 106 27 chr4 37193807 37194288 -147094374 + MLT1E LTR MaLR 75 593 0 294 274 0 27 chr4 37194295 37194368 -147094294 - MER96 DNA MER1_type? -1 174 104 22 0 0 0 chr4 37195028 37195050 -147093612 + AT_rich Low_complexity Low_complexity 1 22 0 465 304 143 19 chr4 37195193 37195354 -147093308 - MER5A DNA MER1_type 0 189 9 767 247 28 0 chr4 37195374 37195556 -147093106 + MER5A DNA MER1_type 3 189 0 212 320 30 40 chr4 37195567 37195667 -147092995 - MER5B DNA MER1_type -1 177 79 243 185 25 99 chr4 37195668 37195749 -147092913 + MER106A DNA MER1_type 162 236 0 484 274 132 15 chr4 37197822 37198026 -147090636 + MIR SINE MIR 26 253 -9 25 0 0 0 chr4 37198067 37198092 -147090570 + AT_rich Low_complexity Low_complexity 1 25 0 183 162 0 0 chr4 37198124 37198161 -147090501 + T-rich Low_complexity Low_complexity 1 37 0 1944 158 0 0 chr4 37198172 37198475 -147090187 - AluSx SINE Alu -9 303 1 212 317 106 16 chr4 37198490 37198613 -147090049 + MIR SINE MIR 129 262 0 1757 129 63 30 chr4 37198637 37198939 -147089723 + AluJb SINE Alu 1 312 0 297 0 0 0 chr4 37198944 37198977 -147089685 + (TA)n Simple_repeat Simple_repeat 1 33 0 2227 87 0 0 chr4 37199308 37199595 -147089067 + AluY SINE Alu 1 287 -24 216 0 0 0 chr4 37199598 37199622 -147089040 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 21 82 0 0 chr4 37199708 37199757 -147088905 + AT_rich Low_complexity Low_complexity 1 49 0 278 187 65 19 chr4 37200940 37201047 -147087615 + (TAGA)n Simple_repeat Simple_repeat 1 112 0 185 0 40 0 chr4 37202169 37202194 -147086468 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 1849 148 0 14 chr4 37204008 37204298 -147084364 - AluSx SINE Alu -26 286 1 364 319 53 0 chr4 37204299 37204412 -147084250 - 7SLRNA srpRNA srpRNA -161 159 41 849 153 25 64 chr4 37204707 37204909 -147083753 - L1MA9 LINE L1 0 6312 6119 2373 151 16 50 chr4 37205057 37205500 -147083162 + MSTC LTR MaLR 1 428 0 3537 244 22 10 chr4 37205557 37206626 -147082036 + L1M4 LINE L1 2705 3786 -2360 2233 133 18 0 chr4 37206621 37207019 -147081643 - L1P LINE L1 -760 5386 4982 * 21 36 0 0 chr4 37207023 37207051 -147081611 + AT_rich Low_complexity Low_complexity 1 28 0 5027 114 13 8 chr4 37207055 37207810 -147080852 + L1PA11 LINE L1 5407 6165 -9 4418 226 60 15 chr4 37207947 37209339 -147079323 + L1M4 LINE L1 3861 5314 -832 526 144 0 99 chr4 37209337 37209448 -147079214 + L1MA9 LINE L1 5821 5920 -371 * 6470 134 38 47 chr4 37209448 37210716 -147077946 + MER52C LTR ERV1 22 1278 0 1720 162 53 21 chr4 37210718 37211094 -147077568 + L1MA9 LINE L1 5925 6312 0 434 200 0 0 chr4 37211097 37211182 -147077480 + L1M LINE L1 5315 5399 -934 2829 111 16 57 chr4 37211183 37211696 -147076966 + L1PA15-16 LINE L1 2081 2572 -4277 330 258 11 11 chr4 37212119 37212212 -147076450 + (TATATG)n Simple_repeat Simple_repeat 4 96 0 314 256 22 44 chr4 37212214 37212304 -147076358 - L1MC4 LINE L1 -1341 6701 6614 35 24 0 0 chr4 37212375 37212417 -147076245 + AT_rich Low_complexity Low_complexity 1 42 0 578 269 108 17 chr4 37212458 37212899 -147075763 + L1MC/D LINE L1 5276 5761 -534 468 175 0 0 chr4 37214119 37214199 -147074463 + MADE1 DNA Mariner 1 80 0 217 371 95 0 chr4 37214521 37214637 -147074025 + L2 LINE L2 3146 3272 0 3875 36 0 2 chr4 37215950 37216421 -147072241 + L1PA4 LINE L1 5682 6151 -4 845 275 92 61 chr4 37216878 37217271 -147071391 + MLT1K LTR MaLR 165 569 -19 741 237 138 22 chr4 37217650 37217874 -147070788 - MIR SINE MIR -4 258 9 1536 154 4 0 chr4 37218864 37219123 -147069539 - L1MA5A LINE L1 -8 6289 6030 676 309 71 30 chr4 37219361 37219711 -147068951 + L2 LINE L2 2707 3078 -235 4030 116 26 3 chr4 37219711 37220332 -147068330 - MER41B LTR ERV1 0 635 1 676 309 71 30 chr4 37220332 37220427 -147068235 + L2 LINE L2 3078 3168 -145 457 188 62 18 chr4 37220530 37220642 -147068020 + MER4A LTR ERV1 1 117 -547 674 162 8 174 chr4 37220719 37221053 -147067609 + LTR34 LTR ERV1 136 260 -205 552 251 33 63 chr4 37221026 37221303 -147067359 + MER4C LTR ERV1 273 465 0 * 2209 85 3 26 chr4 37221318 37221653 -147067009 - AluSc SINE Alu 0 309 1 255 61 0 0 chr4 37221657 37221690 -147066972 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 325 220 69 107 chr4 37221726 37221777 -147066885 + L2 LINE L2 3158 3209 -104 2973 167 24 43 chr4 37221777 37222400 -147066262 - LTR9 LTR ERV1 0 612 2 325 220 69 107 chr4 37222400 37222507 -147066155 + L2 LINE L2 3209 3310 -3 316 240 70 30 chr4 37222512 37222612 -147066050 + MLT1J LTR MaLR 80 183 -328 271 311 71 49 chr4 37222943 37223126 -147065536 - L2 LINE L2 -831 2483 2297 2008 104 4 0 chr4 37224284 37224552 -147064110 + AluSg SINE Alu 1 269 -41 396 0 0 0 chr4 37224559 37224603 -147064059 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 23 54 0 0 chr4 37224991 37225028 -147063634 + AT_rich Low_complexity Low_complexity 1 37 0 478 282 46 24 chr4 37225804 37226002 -147062660 + MIR SINE MIR 6 208 -54 188 264 161 11 chr4 37226651 37226738 -147061924 - MIR SINE MIR -151 111 12 237 284 149 14 chr4 37227591 37227732 -147060930 - L2 LINE L2 -5 3267 3108 22 0 0 0 chr4 37227951 37227973 -147060689 + AT_rich Low_complexity Low_complexity 1 22 0 186 225 25 0 chr4 37227978 37228018 -147060644 - MIR SINE MIR -211 51 11 719 128 0 0 chr4 37228024 37228133 -147060529 + MER30B DNA MER1_type 1 109 -81 402 332 69 40 chr4 37228137 37228523 -147060139 - L2 LINE L2 -176 3137 2731 904 226 65 36 chr4 37228543 37228791 -147059871 - MIR SINE MIR 0 262 8 195 306 47 24 chr4 37228717 37228802 -147059860 + MIR SINE MIR 7 93 -169 * 199 184 0 0 chr4 37229560 37229598 -147059064 - MIR SINE MIR -3 259 222 * 260 211 203 65 chr4 37229564 37229687 -147058975 - L2 LINE L2 -13 3300 3161 835 281 111 47 chr4 37230192 37230679 -147057983 + LTR33A LTR ERVL 6 523 0 213 366 37 0 chr4 37230723 37230805 -147057857 + MIR SINE MIR 45 129 -79 546 300 77 14 chr4 37231024 37231244 -147057418 - MIR SINE MIR -25 237 4 214 167 0 0 chr4 37231771 37231807 -147056855 + (TATATG)n Simple_repeat Simple_repeat 1 36 0 772 326 90 26 chr4 37232524 37233058 -147055604 + L1MCc LINE L1 23 590 -5833 432 230 137 14 chr4 37233063 37233202 -147055460 + MLT1A2 LTR MaLR 219 374 0 850 202 30 25 chr4 37233205 37233408 -147055254 - L1M4 LINE L1 -1099 5047 4844 2168 218 82 0 chr4 37233564 37234042 -147054620 + LTR53 LTR ERVL 2 518 -1 422 217 68 75 chr4 37235703 37235864 -147052798 + LTR50 LTR ERVL 8 167 -628 2162 110 3 10 chr4 37235879 37236188 -147052474 + AluSx SINE Alu 1 307 -5 372 232 36 9 chr4 37236489 37236601 -147052061 + LTR33A LTR ERVL 409 523 0 2305 97 0 6 chr4 37237272 37237583 -147051079 + AluSp SINE Alu 1 309 -4 29 0 0 0 chr4 37238761 37238790 -147049872 + AT_rich Low_complexity Low_complexity 1 29 0 215 400 136 7 chr4 37239065 37239220 -147049442 - L2 LINE L2 -3 3269 3095 1345 226 31 65 chr4 37239307 37239786 -147048876 + MLT1C LTR MaLR 1 463 -4 211 274 16 0 chr4 37239985 37240047 -147048615 + GA-rich Low_complexity Low_complexity 1 63 0 195 100 0 0 chr4 37240559 37240589 -147048073 + (TG)n Simple_repeat Simple_repeat 2 31 0 1476 154 138 0 chr4 37240619 37240879 -147047783 + AluSx SINE Alu 1 296 -16 2237 173 33 81 chr4 37241048 37241205 -147047457 - L1MA10 LINE L1 -1 6333 6170 2666 19 0 10 chr4 37241205 37241518 -147047144 - AluY SINE Alu -1 310 1 2237 173 33 81 chr4 37241518 37241905 -147046757 - L1MA10 LINE L1 -164 6170 5815 234 98 87 65 chr4 37241958 37242050 -147046612 + (TTTA)n Simple_repeat Simple_repeat 3 96 0 242 277 0 0 chr4 37242053 37242118 -147046544 + MER63 DNA MER1_type 686 750 -312 321 246 98 20 chr4 37242182 37242327 -147046335 - MIR SINE MIR -63 145 19 2587 99 8 5 chr4 37242467 37242842 -147045820 + L1PB1 LINE L1 5776 6151 0 218 191 44 0 chr4 37242845 37242913 -147045749 + A-rich Low_complexity Low_complexity 1 71 0 32 26 0 0 chr4 37243243 37243282 -147045380 + AT_rich Low_complexity Low_complexity 1 39 0 474 315 35 7 chr4 37244695 37244838 -147043824 + MIR SINE MIR 2 148 -114 2138 182 29 9 chr4 37244843 37245288 -147043374 + L1MA4 LINE L1 5845 6298 -2 197 379 16 0 chr4 37245310 37245434 -147043228 + MIR SINE MIR 137 262 0 542 231 8 0 chr4 37245489 37245606 -147043056 + MER45A DNA AcHobo 60 177 -1 2161 100 0 0 chr4 37246552 37246915 -147041747 - AluSc SINE Alu 0 363 1 1226 203 24 117 chr4 37247144 37247475 -147041187 - MLT1B LTR MaLR -10 380 94 2136 119 3 13 chr4 37247475 37247787 -147040875 + AluSc SINE Alu 1 309 0 1226 203 24 117 chr4 37247787 37247874 -147040788 - MLT1B LTR MaLR -296 94 1 238 263 18 0 chr4 37248045 37248102 -147040560 - L2 LINE L2 0 3272 3215 540 281 106 40 chr4 37248825 37249174 -147039488 + LTR16A1 LTR ERVL 1 372 -85 25 0 0 0 chr4 37249608 37249633 -147039029 + AT_rich Low_complexity Low_complexity 1 25 0 227 286 78 0 chr4 37250827 37250904 -147037758 + MARNA DNA Mariner 12 94 -492 1679 39 0 14 chr4 37251085 37251292 -147037370 + AluY SINE Alu 92 295 -16 381 275 7 49 chr4 37251561 37251703 -147036959 - L1ME LINE L1 -394 5837 5702 407 284 88 15 chr4 37251766 37251970 -147036692 - L1ME LINE L1 -531 5704 5486 396 299 14 54 chr4 37252040 37252318 -147036344 + L1MEc LINE L1 1401 1667 -4729 2318 276 92 48 chr4 37252640 37254091 -147034571 - L1ME LINE L1 -1748 4467 2922 5677 116 66 5 chr4 37254091 37255689 -147032973 - L1PA13 LINE L1 0 6163 4519 2318 276 92 48 chr4 37255689 37256020 -147032642 - L1ME LINE L1 -3293 2922 2607 368 259 108 8 chr4 37256096 37256355 -147032307 - L1ME LINE L1 -3992 2404 2120 3451 253 76 43 chr4 37256476 37256982 -147031680 - L1MEc LINE L1 -1602 4613 4125 270 0 0 0 chr4 37256982 37257012 -147031650 + (GTTTG)n Simple_repeat Simple_repeat 1 30 0 3451 253 76 43 chr4 37257012 37257867 -147030795 - L1MEc LINE L1 -2090 4125 3190 1467 160 44 7 chr4 37257867 37258142 -147030520 - L1PA16 LINE L1 -9 6157 5873 3451 253 76 43 chr4 37258142 37258379 -147030283 - L1MEc LINE L1 -3025 3190 2962 694 231 55 48 chr4 37258384 37258724 -147029938 - L1MEc LINE L1 -3766 2461 2146 240 245 75 19 chr4 37258857 37258963 -147029699 - L1M4 LINE L1 -3034 3112 3001 3263 189 21 20 chr4 37259059 37259977 -147028685 + L1M1 LINE L1 4684 5609 -694 * 17401 166 32 7 chr4 37259972 37262959 -147025703 + L1MA3 LINE L1 12 3071 -4494 2727 98 31 0 chr4 37262980 37263367 -147025295 - MLT2A1 LTR ERVL -45 399 1 2983 149 37 31 chr4 37263367 37264239 -147024423 + L1MA3 LINE L1 3069 3952 -3613 358 94 0 0 chr4 37264239 37264292 -147024370 - MADE1 DNA Mariner -27 53 1 4971 164 14 68 chr4 37264297 37264704 -147023958 + L1MA3 LINE L1 5588 6016 -1670 234 0 0 0 chr4 37264704 37264730 -147023932 + (TTA)n Simple_repeat Simple_repeat 3 28 0 15638 70 7 0 chr4 37264730 37267576 -147021086 - L1PA6 LINE L1 -18 6136 3275 4971 164 14 68 chr4 37267576 37268612 -147020050 + L1MA3 LINE L1 6014 6943 -743 1058 118 24 0 chr4 37268634 37268803 -147019859 - L1MA3 LINE L1 0 6305 6133 4655 136 8 6 chr4 37268803 37269579 -147019083 + L1MA3 LINE L1 6947 7724 0 1115 235 116 78 chr4 37269619 37270467 -147018195 - L1MC4a LINE L1 -1346 6462 5583 1159 211 5 0 chr4 37270569 37270778 -147017884 - MER2 DNA MER2_type -135 210 1 715 287 23 11 chr4 37270785 37271046 -147017616 - L1MC4a LINE L1 -2230 5578 5315 237 301 51 40 chr4 37271283 37271579 -147017083 - L1MC4a LINE L1 -1112 5034 4736 303 212 141 20 chr4 37272450 37272549 -147016113 - MLT1K LTR MaLR 0 588 478 406 267 111 47 chr4 37272581 37272753 -147015909 - MLT1K LTR MaLR -196 392 210 24 32 0 0 chr4 37273881 37273912 -147014750 + AT_rich Low_complexity Low_complexity 1 31 0 187 243 233 0 chr4 37273925 37274028 -147014634 - MIR SINE MIR -6 256 130 220 304 22 22 chr4 37274286 37274378 -147014284 - MIR SINE MIR -47 215 124 521 357 15 0 chr4 37275330 37275526 -147013136 + MIR SINE MIR 48 246 -16 1746 137 32 7 chr4 37276018 37276295 -147012367 + AluSx SINE Alu 1 284 -28 318 371 16 21 chr4 37276476 37276662 -147012000 + L2 LINE L2 3125 3309 -4 2317 84 3 0 chr4 37276871 37277181 -147011481 + AluY SINE Alu 1 311 0 254 103 0 0 chr4 37277288 37277327 -147011335 - MADE1 DNA Mariner -41 39 1 22 35 0 0 chr4 37277492 37277521 -147011141 + AT_rich Low_complexity Low_complexity 1 29 0 2414 189 37 2 chr4 37277733 37278221 -147010441 - LTR22 LTR ERVK -4 505 1 5997 200 29 10 chr4 37278298 37279816 -147008846 + L1P4 LINE L1 3947 5501 -665 2289 173 2 18 chr4 37279819 37280212 -147008450 + Ricksha DNA DNA 333 719 -1327 3103 185 5 10 chr4 37280214 37280803 -147007859 + Ricksha DNA DNA 2274 3214 -13 261 178 0 0 chr4 37280805 37280850 -147007812 - L1MB1 LINE L1 -199 5990 5946 27 0 0 0 chr4 37281432 37281459 -147007203 + AT_rich Low_complexity Low_complexity 1 27 0 186 327 19 39 chr4 37282012 37282116 -147006546 + MIR SINE MIR 5 106 -156 1225 224 81 48 chr4 37282665 37283085 -147005577 + LTR47B LTR ERVL 3 436 -7 814 293 39 4 chr4 37283278 37283510 -147005152 + MIR SINE MIR 23 262 0 21 36 0 0 chr4 37283839 37283867 -147004795 + AT_rich Low_complexity Low_complexity 1 28 0 3838 289 43 29 chr4 37284884 37286494 -147002168 + L1PBa LINE L1 7 1640 -5223 * 5485 179 31 18 chr4 37286464 37287769 -147000893 + L1PB3 LINE L1 653 1975 -4875 665 164 0 0 chr4 37287778 37287888 -147000774 - MSTA LTR MaLR -318 110 1 234 114 0 0 chr4 37287888 37287923 -147000739 + L1PB3 LINE L1 2604 2638 -4211 * 11250 205 31 12 chr4 37287913 37288874 -146999788 + L1PB3 LINE L1 3002 3943 -2914 2093 126 51 28 chr4 37288874 37289230 -146999432 + THE1B LTR MaLR 1 364 0 11250 205 31 12 chr4 37289230 37292045 -146996617 + L1PB3 LINE L1 3943 6850 -7 22 0 0 0 chr4 37292485 37292507 -146996155 + AT_rich Low_complexity Low_complexity 1 22 0 575 241 186 8 chr4 37292907 37293143 -146995519 - LTR16A1 LTR ERVL -2 455 178 216 97 0 0 chr4 37293177 37293208 -146995454 + (GA)n Simple_repeat Simple_repeat 1 31 0 253 139 0 0 chr4 37293238 37293274 -146995388 - LTR16A1 LTR ERVL -421 36 1 2074 96 20 27 chr4 37293691 37293992 -146994670 + AluY SINE Alu 1 299 -12 1803 168 0 3 chr4 37295056 37295348 -146993314 + AluSx SINE Alu 1 291 -21 23 54 0 0 chr4 37295734 37295771 -146992891 + AT_rich Low_complexity Low_complexity 1 37 0 249 33 0 0 chr4 37296732 37296762 -146991900 + (A)n Simple_repeat Simple_repeat 1 30 0 1259 211 33 0 chr4 37296888 37297187 -146991475 - MER33 DNA MER1_type -14 310 2 315 49 0 0 chr4 37297325 37297366 -146991296 + (CA)n Simple_repeat Simple_repeat 2 42 0 41 0 0 0 chr4 37298049 37298090 -146990572 + AT_rich Low_complexity Low_complexity 1 41 0 2574 61 0 0 chr4 37298882 37299192 -146989470 + AluY SINE Alu 2 311 0 201 152 0 0 chr4 37300100 37300133 -146988529 + (CA)n Simple_repeat Simple_repeat 2 34 0 407 298 94 21 chr4 37300532 37300723 -146987939 + L3 LINE CR1 1209 1413 -164 5415 66 18 8 chr4 37300834 37301557 -146987105 - HERVE LTR ERV1 -5904 992 263 691 93 0 46 chr4 37301550 37301658 -146987004 - HERVE LTR ERV1 -7428 385 283 * 1506 207 0 0 chr4 37301658 37301988 -146986674 - AluY SINE Alu 0 332 3 1400 220 3 14 chr4 37301990 37302286 -146986376 - HERVE LTR ERV1 -6603 293 1 2524 47 38 0 chr4 37302412 37302731 -146985931 + L1PA3 LINE L1 5824 6154 -1 31 26 0 0 chr4 37302731 37302769 -146985893 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr4 37303562 37303585 -146985077 + AT_rich Low_complexity Low_complexity 1 23 0 506 16 16 0 chr4 37303746 37303809 -146984853 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 393 342 89 21 chr4 37304097 37304287 -146984375 - L2 LINE L2 0 3272 3070 5326 145 38 18 chr4 37305601 37306168 -146982494 - L1MA8 LINE L1 0 6291 5694 2829 89 54 12 chr4 37306168 37306594 -146982068 + MLT2A1 LTR ERVL 1 444 0 5326 145 38 18 chr4 37306594 37307021 -146981641 - L1MA8 LINE L1 -597 5694 5277 2600 11 0 0 chr4 37307374 37307698 -146980964 - AluY SINE Alu 0 326 3 2001 123 0 3 chr4 37307701 37307994 -146980668 - Harlequin LTR ERV1 -6604 292 1 1949 182 93 30 chr4 37307994 37308455 -146980207 - LTR2B LTR ERV1 0 490 1 1058 228 28 4 chr4 37309121 37309376 -146979286 + MLT1F1 LTR MaLR 307 567 0 2546 142 33 24 chr4 37309712 37310136 -146978526 + Tigger2a DNA MER2_type 1 428 -6 21 0 0 0 chr4 37310816 37310837 -146977825 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 37312202 37312223 -146976439 + AT_rich Low_complexity Low_complexity 1 21 0 196 238 12 12 chr4 37312239 37312319 -146976343 + (TA)n Simple_repeat Simple_repeat 2 81 0 492 292 111 37 chr4 37312541 37313388 -146975274 - L1M4 LINE L1 -846 5300 4391 2708 133 12 9 chr4 37313407 37313834 -146974828 - LTR9B LTR ERV1 -86 558 131 1247 89 78 0 chr4 37313832 37314012 -146974650 - LTR9B LTR ERV1 -450 194 1 * 9560 114 17 11 chr4 37314013 37316529 -146972133 - HUERS-P3b LTR ERV1 -7 7411 4714 5533 92 6 43 chr4 37316521 37317354 -146971308 - HUERS-P3b LTR ERV1 -3544 3874 3073 * 2097 171 67 3 chr4 37317354 37317729 -146970933 + LTR8 LTR ERV1 1 399 -292 6816 117 18 9 chr4 37317729 37319488 -146969174 - HUERS-P3b LTR ERV1 -4760 2658 747 2181 58 54 0 chr4 37319494 37319772 -146968890 - AluY SINE Alu -18 293 1 693 155 39 71 chr4 37319788 37319818 -146968844 - HUERS-P3b LTR ERV1 -6859 559 530 2406 59 0 7 chr4 37319818 37320124 -146968538 - AluY SINE Alu -7 304 1 693 155 39 71 chr4 37320124 37320248 -146968414 - HUERS-P3b LTR ERV1 -6888 530 410 379 206 41 52 chr4 37320252 37320349 -146968313 - HUERS-P3b LTR ERV1 -7322 96 1 908 165 13 0 chr4 37320349 37320507 -146968155 - LTR9B LTR ERV1 0 644 485 370 330 21 0 chr4 37320535 37320723 -146967939 - L1M4 LINE L1 -1778 4368 4177 292 266 206 16 chr4 37321383 37321567 -146967095 + MIR SINE MIR 44 262 0 14658 225 35 8 chr4 37322701 37328775 -146959887 + L1PA15 LINE L1 2 6814 -2 190 313 15 30 chr4 37329355 37329422 -146959240 - MIR SINE MIR -109 153 88 30 59 0 0 chr4 37329458 37329509 -146959153 + AT_rich Low_complexity Low_complexity 1 51 0 643 257 116 33 chr4 37329941 37330182 -146958480 + LTR40a LTR ERVL 257 517 -2 301 328 50 8 chr4 37330195 37330314 -146958348 + MLT1J LTR MaLR 86 209 -302 218 316 188 26 chr4 37330493 37330610 -146958052 - L2 LINE L2 0 3272 3137 1193 325 102 5 chr4 37330686 37331252 -146957410 + L2 LINE L2 1054 1674 -1640 383 370 59 31 chr4 37333621 37333975 -146954687 - L2 LINE L2 -74 3198 2835 2538 7 0 0 chr4 37334255 37334528 -146954134 - AluYb8 SINE Alu -11 307 35 202 83 0 56 chr4 37335083 37335119 -146953543 + L2 LINE L2 3020 3053 -260 825 245 5 42 chr4 37335361 37335577 -146953085 - MIR SINE MIR -10 252 45 246 356 33 0 chr4 37335684 37335774 -146952888 - MIR SINE MIR -83 125 33 428 351 5 22 chr4 37335963 37336185 -146952477 - MLT2E LTR ERVL 0 628 411 400 273 15 45 chr4 37336248 37336380 -146952282 - MLT2E LTR ERVL -469 159 32 928 238 80 27 chr4 37336420 37336851 -146951811 + MLT1E LTR MaLR 20 569 -24 1759 154 57 13 chr4 37337444 37337743 -146950919 + AluJo SINE Alu 1 312 0 417 293 76 57 chr4 37338317 37338686 -146949976 + MLT1I LTR MaLR 1 376 -33 1061 318 134 26 chr4 37339897 37340823 -146947839 - L2 LINE L2 -215 3057 2029 316 301 33 104 chr4 37344395 37344694 -146943968 + L2 LINE L2 2578 2855 -459 243 330 85 17 chr4 37344772 37344890 -146943772 + MLT1J2 LTR MaLR 83 208 -242 916 9 0 0 chr4 37344928 37345034 -146943628 + L1PA4 LINE L1 6047 6152 -3 350 333 14 35 chr4 37345230 37345374 -146943288 + L2 LINE L2 2897 3037 -235 22 56 0 0 chr4 37346017 37346053 -146942609 + AT_rich Low_complexity Low_complexity 1 36 0 216 0 0 0 chr4 37346230 37346254 -146942408 + (TTA)n Simple_repeat Simple_repeat 2 25 0 294 50 0 0 chr4 37346946 37346986 -146941676 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 655 295 68 57 chr4 37346988 37347357 -146941305 - L2 LINE L2 -15 3298 2926 374 318 95 7 chr4 37347651 37347799 -146940863 - MLT1J2 LTR MaLR -18 432 272 430 251 51 55 chr4 37348087 37348322 -146940340 - L1ME3A LINE L1 -219 5951 5718 349 216 144 0 chr4 37348994 37349091 -146939571 - L1ME3A LINE L1 -584 5578 5468 512 117 26 0 chr4 37349276 37349353 -146939309 - THE1C LTR MaLR -296 79 1 22 70 0 0 chr4 37349994 37350037 -146938625 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr4 37350307 37350329 -146938333 + AT_rich Low_complexity Low_complexity 1 22 0 5031 133 48 10 chr4 37350976 37351927 -146936735 - L1PB3 LINE L1 -1 6153 5171 4100 219 22 5 chr4 37351922 37352749 -146935913 + L1PBb LINE L1 130 970 -5234 * 306 262 12 0 chr4 37352963 37353047 -146935615 + (TA)n Simple_repeat Simple_repeat 1 85 0 262 354 0 0 chr4 37353358 37353440 -146935222 + MIR3 SINE MIR 82 163 -45 33898 83 5 14 chr4 37353670 37354493 -146934169 - L1PA6 LINE L1 -10 6144 5315 2428 87 0 0 chr4 37354493 37354803 -146933859 + AluY SINE Alu 1 310 -1 33898 83 5 14 chr4 37354803 37359564 -146929098 - L1PA6 LINE L1 -839 5315 606 332 272 79 90 chr4 37359593 37359872 -146928790 + L2 LINE L2 3025 3300 -13 545 300 110 65 chr4 37360507 37360924 -146927738 - MLT1J LTR MaLR -75 436 1 1337 223 95 54 chr4 37361537 37362034 -146926628 + LTR40a LTR ERVL 3 519 0 318 87 0 0 chr4 37363438 37363484 -146925178 + (TG)n Simple_repeat Simple_repeat 1 46 0 27 0 0 0 chr4 37363774 37363801 -146924861 + AT_rich Low_complexity Low_complexity 1 27 0 364 262 191 49 chr4 37364747 37364972 -146923690 + MIR SINE MIR 3 259 -3 2590 158 14 9 chr4 37365377 37365801 -146922861 - MSTB LTR MaLR 0 426 1 839 166 13 0 chr4 37366905 37367056 -146921606 - L1PA16 LINE L1 -4 6162 6010 2115 116 0 3 chr4 37367456 37367741 -146920921 + AluSx SINE Alu 17 300 -12 235 244 122 37 chr4 37367934 37368016 -146920646 - L2 LINE L2 -5 3267 3179 323 294 86 25 chr4 37370021 37370184 -146918478 - MIR SINE MIR -53 209 37 551 323 85 38 chr4 37370577 37370979 -146917683 - L2 LINE L2 -36 3277 2804 805 294 50 32 chr4 37370992 37371332 -146917330 - LTR16B LTR ERVL -24 440 95 799 207 148 17 chr4 37371451 37371688 -146916974 - L2 LINE L2 -510 2804 2537 200 244 0 0 chr4 37372221 37372262 -146916400 + T-rich Low_complexity Low_complexity 1 41 0 298 348 35 0 chr4 37372381 37372496 -146916166 + MLT1H LTR MaLR 12 130 -419 2961 3 0 0 chr4 37372918 37373236 -146915426 + AluYb8 SINE Alu 1 318 0 2840 72 5 8 chr4 37373236 37373290 -146915372 + L1P1 LINE L1 5294 5347 -808 4026 24 0 0 chr4 37373290 37373758 -146914904 - L1PA3 LINE L1 -1 6154 5687 2840 72 5 8 chr4 37373758 37374094 -146914568 + L1PA3 LINE L1 5347 5683 -472 414 251 80 31 chr4 37374216 37374379 -146914283 + MIR SINE MIR 92 262 0 295 326 11 22 chr4 37375798 37375976 -146912686 + Harlequin LTR ERV1 118 293 -6603 782 288 13 13 chr4 37375978 37376307 -146912355 + AluY SINE Alu 3 331 0 691 93 0 46 chr4 37376307 37376415 -146912247 + HERVE LTR ERV1 283 385 -7428 * 8526 59 22 17 chr4 37376408 37377560 -146911102 + HERVE LTR ERV1 263 1419 -5477 * 30334 66 18 13 chr4 37377554 37382387 -146906275 + HERVE LTR ERV1 2054 6896 0 1988 169 91 41 chr4 37382388 37382849 -146905813 + LTR2B LTR ERV1 7 490 0 298 306 161 33 chr4 37383702 37383882 -146904780 - MIR SINE MIR -51 211 9 383 307 64 14 chr4 37384694 37384834 -146903828 - MIR SINE MIR -7 255 109 281 331 88 53 chr4 37384935 37385198 -146903464 + L2 LINE L2 3041 3312 -1 287 136 85 17 chr4 37385238 37385297 -146903365 - MER67D LTR ERV1 -4 510 448 1125 170 85 18 chr4 37385376 37385600 -146903062 - MER67C LTR ERV1 -307 403 165 680 159 7 36 chr4 37385615 37385775 -146902887 + FLAM_C SINE Alu 7 143 0 812 172 0 0 chr4 37385775 37385926 -146902736 - MER67D LTR ERV1 -363 151 1 627 285 89 26 chr4 37385969 37386271 -146902391 + LTR16B LTR ERVL 97 417 -47 3895 143 22 2 chr4 37386272 37386907 -146901755 + MER39B LTR ERV1 2 649 -4 194 229 14 0 chr4 37386998 37387068 -146901594 + GA-rich Low_complexity Low_complexity 3 73 0 183 42 0 0 chr4 37387085 37387109 -146901553 + (CA)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chr4 37387861 37387883 -146900779 + AT_rich Low_complexity Low_complexity 1 22 0 403 262 29 35 chr4 37388536 37388708 -146899954 - L2 LINE L2 0 3313 3143 323 287 23 47 chr4 37389732 37389861 -146898801 + MIR SINE MIR 47 172 -90 2118 94 13 13 chr4 37389861 37390170 -146898492 - AluSc SINE Alu 0 309 1 2322 104 0 0 chr4 37390593 37390900 -146897762 + AluSg SINE Alu 1 307 -3 288 0 0 0 chr4 37391760 37391792 -146896870 + (CA)n Simple_repeat Simple_repeat 1 32 0 289 273 111 10 chr4 37391822 37391921 -146896741 - MIR SINE MIR -149 113 5 183 42 0 0 chr4 37393508 37393532 -146895130 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chr4 37394075 37394103 -146894559 + AT_rich Low_complexity Low_complexity 1 28 0 285 98 0 0 chr4 37394134 37394175 -146894487 + (CA)n Simple_repeat Simple_repeat 2 42 0 290 331 181 0 chr4 37394982 37395109 -146893553 + MER5A DNA MER1_type 34 183 -6 211 335 119 23 chr4 37395188 37395364 -146893298 - MIR SINE MIR -29 233 41 757 346 116 31 chr4 37395389 37396102 -146892560 - L3 LINE CR1 -61 1516 743 2620 142 23 9 chr4 37397324 37397762 -146890900 - L1M2 LINE L1 -550 5741 5298 955 142 20 0 chr4 37397764 37397963 -146890699 + L1MA7 LINE L1 6099 6312 0 402 277 8 39 chr4 37397971 37398101 -146890561 - MER58B DNA MER1_type 0 341 216 22 0 0 0 chr4 37398432 37398454 -146890208 + AT_rich Low_complexity Low_complexity 1 22 0 53 78 0 0 chr4 37398636 37398752 -146889910 + AT_rich Low_complexity Low_complexity 1 116 0 275 331 26 52 chr4 37399442 37399596 -146889066 + MER5A DNA MER1_type 40 189 0 2606 258 55 1 chr4 37401279 37402170 -146886492 + L1M4 LINE L1 3016 3954 -2192 * 6212 221 50 22 chr4 37402166 37402715 -146885947 + L1MC/D LINE L1 3084 3616 -2623 2358 115 19 19 chr4 37402715 37403079 -146885583 - THE1B LTR MaLR 0 364 1 6212 221 50 22 chr4 37403079 37404827 -146883835 + L1MC/D LINE L1 3616 5570 -669 * 31065 114 14 56 chr4 37404795 37411210 -146877452 + L1PA7 LINE L1 12 6150 -4 1970 130 0 7 chr4 37411205 37411513 -146877149 + L1PB4 LINE L1 5476 5781 -375 * 629 64 41 35 chr4 37411521 37411684 -146876978 + (TATAA)n Simple_repeat Simple_repeat 1 167 -6 1783 209 14 3 chr4 37411684 37412043 -146876619 + L1PB4 LINE L1 5783 6145 -11 629 64 41 35 chr4 37412043 37412051 -146876611 + (TATAA)n Simple_repeat Simple_repeat 167 173 0 27 29 0 0 chr4 37412051 37412085 -146876577 + AT_rich Low_complexity Low_complexity 1 34 0 25 0 0 0 chr4 37412285 37412310 -146876352 + AT_rich Low_complexity Low_complexity 1 25 0 244 233 0 0 chr4 37413291 37413351 -146875311 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 243 326 33 11 chr4 37413570 37413662 -146875000 - MIR SINE MIR -87 175 82 181 250 0 0 chr4 37414987 37415031 -146873631 - L2 LINE L2 -8 3305 3262 717 269 65 29 chr4 37415053 37415298 -146873364 + MLT1J LTR MaLR 1 254 -257 726 181 7 28 chr4 37415319 37415463 -146873199 + FLAM_C SINE Alu 1 141 -2 596 234 108 0 chr4 37415564 37415722 -146872940 - MER58A DNA MER1_type -49 175 1 375 297 25 69 chr4 37415722 37415920 -146872742 + MLT1J LTR MaLR 323 511 0 327 326 93 50 chr4 37416027 37416594 -146872068 - L2 LINE L2 -188 3084 2403 213 368 53 0 chr4 37416612 37416726 -146871936 + MIR SINE MIR 20 139 -123 755 250 0 12 chr4 37416777 37416945 -146871717 + MLT1A2 LTR MaLR 21 186 -188 199 172 17 17 chr4 37416955 37417013 -146871649 + CT-rich Low_complexity Low_complexity 4 61 0 321 272 14 95 chr4 37417019 37417166 -146871496 + MLT1A2 LTR MaLR 194 328 -68 716 166 20 190 chr4 37417674 37417800 -146870862 - MER2 DNA MER2_type -135 210 64 4475 114 13 10 chr4 37417800 37418491 -146870171 - L1PA11 LINE L1 -7 6167 5475 716 166 20 190 chr4 37418491 37418515 -146870147 - MER2 DNA MER2_type -281 64 38 14639 154 6 24 chr4 37418515 37418620 -146870042 - L1PA10 LINE L1 0 6168 6063 2323 114 50 8 chr4 37418620 37418980 -146869682 - THE1C LTR MaLR 0 375 1 10031 123 40 3 chr4 37418980 37420501 -146868161 - THE1C-int LTR MaLR 0 1580 3 2498 121 8 19 chr4 37420503 37420882 -146867780 - THE1C LTR MaLR 0 375 1 14639 154 6 24 chr4 37420882 37424277 -146864385 - L1PA10 LINE L1 -105 6063 2706 716 166 20 190 chr4 37424277 37424378 -146864284 - MER2 DNA MER2_type -307 38 1 35 0 0 0 chr4 37424382 37424417 -146864245 + AT_rich Low_complexity Low_complexity 1 35 0 247 345 28 100 chr4 37424698 37425017 -146863645 + L2 LINE L2 2965 3260 -12 489 60 24 24 chr4 37425273 37425356 -146863306 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 246 229 57 14 chr4 37425380 37425450 -146863212 + Zaphod DNA AcHobo 409 481 -3550 452 300 17 44 chr4 37425603 37425896 -146862766 - L1MCb LINE L1 -4924 1630 1346 255 217 0 0 chr4 37425992 37426052 -146862610 + (TA)n Simple_repeat Simple_repeat 2 61 0 5584 191 68 26 chr4 37426181 37427486 -146861176 - L1MC3 LINE L1 -15 7770 6411 469 236 71 57 chr4 37427618 37427898 -146860764 + MER34B LTR ERV1 279 562 -3 1824 245 29 46 chr4 37427902 37428764 -146859898 - L1MCb LINE L1 -4852 1193 553 1554 241 43 72 chr4 37428826 37429411 -146859251 - L1MCb LINE L1 -5475 570 3 21 0 0 0 chr4 37429659 37429680 -146858982 + AT_rich Low_complexity Low_complexity 1 21 0 2346 97 0 0 chr4 37429982 37430290 -146858372 + AluSx SINE Alu 1 308 -4 185 313 62 25 chr4 37430430 37430510 -146858152 - MIR SINE MIR -106 156 74 25 51 0 0 chr4 37430548 37430587 -146858075 + AT_rich Low_complexity Low_complexity 1 39 0 1873 136 0 7 chr4 37431668 37431947 -146856715 - AluSx SINE Alu -20 292 16 1782 177 82 19 chr4 37432561 37432940 -146855722 - MER4A LTR ERV1 -1 663 261 576 141 0 10 chr4 37432940 37433039 -146855623 - MER4A LTR ERV1 -566 98 1 600 206 46 105 chr4 37433693 37433912 -146854750 - MER63A DNA MER1_type 0 210 5 3455 170 26 5 chr4 37434599 37435262 -146853400 - L1MC1 LINE L1 0 6333 5657 362 339 28 34 chr4 37435482 37435659 -146853003 + L2 LINE L2 2886 3061 -252 700 242 6 12 chr4 37436519 37436680 -146851982 + MER5B DNA MER1_type 3 162 -16 268 221 65 0 chr4 37436850 37436927 -146851735 + HAL1 LINE L1 2259 2340 -167 2367 220 44 22 chr4 37437540 37437797 -146850865 - MLT2B1 LTR ERVL -8 512 262 4328 91 3 84 chr4 37437797 37438520 -146850142 - MER4A LTR ERV1 0 664 1 2367 220 44 22 chr4 37438520 37438763 -146849899 - MLT2B1 LTR ERVL -258 262 1 689 313 33 0 chr4 37438806 37439017 -146849645 - MIR SINE MIR 0 262 45 2300 63 0 3 chr4 37439019 37439346 -146849316 + AluY SINE Alu 1 326 0 5326 145 38 18 chr4 37439699 37440126 -146848536 + L1MA8 LINE L1 5277 5694 -597 2829 89 54 12 chr4 37440126 37440552 -146848110 - MLT2A1 LTR ERVL 0 444 1 5326 145 38 18 chr4 37440552 37441119 -146847543 + L1MA8 LINE L1 5694 6291 0 393 342 89 21 chr4 37442432 37442622 -146846040 + L2 LINE L2 3070 3272 0 506 16 16 0 chr4 37442910 37442973 -146845689 + (TAGA)n Simple_repeat Simple_repeat 1 64 0 23 0 0 0 chr4 37443134 37443157 -146845505 + AT_rich Low_complexity Low_complexity 1 23 0 31 26 0 0 chr4 37443950 37443988 -146844674 + AT_rich Low_complexity Low_complexity 1 38 0 629 13 13 0 chr4 37443988 37444066 -146844596 - L1PA3 LINE L1 -1 6154 6076 785 227 17 11 chr4 37444752 37444928 -146843734 - MLT1C LTR MaLR 0 467 291 783 158 82 53 chr4 37444924 37445095 -146843567 - MLT1C LTR MaLR -286 181 6 * 295 324 7 56 chr4 37445118 37445260 -146843402 + MIR3 SINE MIR 72 206 -2 441 0 0 0 chr4 37445487 37445536 -146843126 + (TG)n Simple_repeat Simple_repeat 2 50 0 1404 84 0 0 chr4 37445537 37445715 -146842947 - AluY SINE Alu -133 178 1 854 101 101 0 chr4 37446111 37446250 -146842412 + AluSg/x SINE Alu 159 311 -1 3347 167 15 2 chr4 37446267 37446871 -146841791 + L1MB3 LINE L1 5548 6159 -24 2242 109 0 10 chr4 37446931 37447235 -146841427 + AluSq SINE Alu 1 301 -12 361 115 0 0 chr4 37447243 37447304 -146841358 + L1MB3 LINE L1 6095 6155 -28 2502 264 58 9 chr4 37447311 37448290 -146840372 + L1ME1 LINE L1 2705 3731 -2415 3542 95 2 0 chr4 37448500 37448986 -146839676 - L1PA12 LINE L1 -3 6165 5679 1903 252 50 25 chr4 37448988 37449694 -146838968 + L1ME1 LINE L1 3753 4475 -1671 10673 24 7 1 chr4 37449709 37451743 -146836919 - L1PA4 LINE L1 -3 6152 4111 9405 33 1 0 chr4 37451743 37452894 -146835768 + L1PA4 LINE L1 2957 4108 -2038 3034 278 71 31 chr4 37454531 37455852 -146832810 - L2 LINE L2 -58 3255 1888 524 0 0 0 chr4 37457526 37457586 -146831076 - L1P1 LINE L1 -375 5780 5721 * 635 290 36 0 chr4 37457584 37457832 -146830830 + L1ME1 LINE L1 4461 4717 -1429 910 255 88 17 chr4 37457842 37458136 -146830526 + L1ME1 LINE L1 5838 6152 -14 284 356 39 11 chr4 37458134 37458314 -146830348 + L1ME LINE L1 5458 5642 -522 * 956 220 28 60 chr4 37458429 37458858 -146829804 + L1MC5 LINE L1 6875 7231 -730 746 194 0 8 chr4 37458869 37459003 -146829659 + FLAM_A SINE Alu 1 133 0 407 278 71 17 chr4 37459033 37459370 -146829292 + L1MC5 LINE L1 7259 7510 -451 24 32 0 0 chr4 37459465 37459496 -146829166 + AT_rich Low_complexity Low_complexity 1 31 0 230 288 48 8 chr4 37460323 37460448 -146828214 + L1MDa LINE L1 1300 1429 -5111 845 150 0 14 chr4 37460461 37460601 -146828061 - FLAM_C SINE Alu 0 143 6 419 325 62 29 chr4 37460766 37461009 -146827653 + L1MDa LINE L1 1695 1945 -4776 1324 124 0 25 chr4 37461016 37461218 -146827444 - AluSg/x SINE Alu -19 291 95 815 119 56 0 chr4 37461221 37461347 -146827315 - AluSq/x SINE Alu -180 133 1 460 253 118 0 chr4 37461370 37461540 -146827122 + L1MDa LINE L1 1953 2142 -4579 340 321 95 24 chr4 37461544 37462039 -146826623 + L1MDa LINE L1 2189 2718 -4003 1149 190 93 8 chr4 37462040 37462287 -146826375 + MLT1E3 LTR MaLR 356 623 -1 598 238 38 22 chr4 37462295 37462480 -146826182 + L1ME3A LINE L1 5744 5931 -239 1445 228 6 10 chr4 37462839 37463150 -146825512 + AluJo SINE Alu 1 310 -2 3539 194 87 8 chr4 37464526 37465191 -146823471 - MER21B LTR ERV1 -92 771 45 2104 123 14 0 chr4 37465191 37465484 -146823178 + AluSx SINE Alu 1 297 -15 3539 194 87 8 chr4 37465484 37465533 -146823129 - MER21B LTR ERV1 -818 45 1 1479 141 129 25 chr4 37465938 37466264 -146822398 - MER46B DNA MER2_type -1 235 1 408 71 0 0 chr4 37466264 37466320 -146822342 + (TA)n Simple_repeat Simple_repeat 1 56 0 1445 197 33 16 chr4 37466607 37466911 -146821751 - AluJo SINE Alu -3 309 1 509 296 111 18 chr4 37466997 37467277 -146821385 - MER90 LTR ERV1 -58 517 212 284 308 110 14 chr4 37467903 37468049 -146820613 + MIR SINE MIR 53 212 -50 2261 113 10 0 chr4 37468328 37468637 -146820025 + AluSx SINE Alu 1 312 0 426 303 53 43 chr4 37469024 37469324 -146819338 + MARNA DNA Mariner 78 380 -206 22 35 0 0 chr4 37469579 37469608 -146819054 + AT_rich Low_complexity Low_complexity 1 29 0 462 18 0 0 chr4 37470437 37470492 -146818170 + (TA)n Simple_repeat Simple_repeat 2 56 0 416 122 27 0 chr4 37470534 37470608 -146818054 - L1MB1 LINE L1 0 6168 6093 2272 157 27 7 chr4 37470629 37471037 -146817625 + L1MB1 LINE L1 5486 5901 -267 2508 86 5 76 chr4 37471047 37471377 -146817285 + MER48 LTR ERV1 10 307 -80 2284 75 0 0 chr4 37471377 37471672 -146816990 + AluY SINE Alu 2 296 -15 2508 86 5 76 chr4 37471672 37471748 -146816914 + MER48 LTR ERV1 307 387 0 981 205 5 0 chr4 37471750 37471935 -146816727 + L1MB1 LINE L1 5903 6088 -80 2306 165 31 13 chr4 37472435 37472990 -146815672 - L1MA4A LINE L1 -20 6283 5658 434 151 93 0 chr4 37473118 37473204 -146815458 + MER81 DNA DNA 21 114 0 1514 122 7 28 chr4 37473443 37473751 -146814911 + THE1B LTR MaLR 1 364 0 11582 92 5 10 chr4 37473751 37475028 -146813634 + THE1B-int LTR MaLR 1 1270 -310 2808 13 0 0 chr4 37475028 37475334 -146813328 + AluYb8 SINE Alu 1 306 -12 11582 92 5 10 chr4 37475334 37475637 -146813025 + THE1B-int LTR MaLR 1270 1573 -7 2087 135 48 22 chr4 37475643 37475998 -146812664 + THE1B LTR MaLR 1 364 0 381 301 10 70 chr4 37476015 37476214 -146812448 + L1ME2 LINE L1 5720 5906 -258 216 353 173 0 chr4 37476343 37476493 -146812169 - MIR SINE MIR -16 246 71 1336 230 40 9 chr4 37476709 37477217 -146811445 + MLT1E LTR MaLR 26 593 0 706 229 136 63 chr4 37477477 37477809 -146810853 - LTR18A LTR ERVL -1 356 1 240 257 44 26 chr4 37478203 37478316 -146810346 - MER103 DNA DNA -43 123 9 810 333 75 22 chr4 37478840 37479255 -146809407 + L2 LINE L2 2876 3312 -1 1557 243 44 30 chr4 37479300 37479897 -146808765 + L1ME1 LINE L1 3821 4425 -1721 1379 191 24 42 chr4 37479868 37480006 -146808656 + L1MA1 LINE L1 3367 3506 -2640 * 2289 81 13 29 chr4 37480006 37480313 -146808349 + AluY SINE Alu 1 302 -9 1379 191 24 42 chr4 37480313 37480509 -146808153 + L1MA1 LINE L1 3506 3695 -2451 6270 134 32 8 chr4 37480522 37482142 -146806520 + L1MA1 LINE L1 4639 6298 -4 2912 257 31 24 chr4 37482160 37482361 -146806301 + L1ME1 LINE L1 4373 4571 -1595 2007 28 36 0 chr4 37482361 37482608 -146806054 - L1PA5 LINE L1 -4 6150 5895 2912 257 31 24 chr4 37482608 37484142 -146804520 + L1ME1 LINE L1 4571 6122 -44 506 269 25 6 chr4 37484030 37484190 -146804472 + L1MA10 LINE L1 6169 6331 -3 * 330 204 32 32 chr4 37484319 37484412 -146804250 + L1MC4 LINE L1 6613 6705 -1337 833 200 28 0 chr4 37484448 37484593 -146804069 + MLT1A1 LTR MaLR 145 293 -72 237 33 0 0 chr4 37484595 37484625 -146804037 + (GA)n Simple_repeat Simple_repeat 1 30 0 1766 137 0 0 chr4 37485144 37485392 -146803270 - AluSx SINE Alu -16 296 49 211 346 58 50 chr4 37485511 37485596 -146803066 - L2 LINE L2 -219 3053 2970 1885 192 14 27 chr4 37485596 37485966 -146802696 + MLT1A1 LTR MaLR 1 365 0 211 346 58 50 chr4 37485966 37486120 -146802542 - L2 LINE L2 -302 2970 2812 436 298 31 37 chr4 37486368 37486529 -146802133 - LTR16A LTR ERVL -144 306 147 435 374 75 10 chr4 37486603 37487015 -146801647 - LTR16A LTR ERVL -3 447 9 1055 119 0 0 chr4 37487045 37487196 -146801466 - AluSp/q SINE Alu 0 313 163 239 308 13 0 chr4 37489872 37489950 -146798712 + MLT1L LTR MaLR 1 79 -536 308 227 159 101 chr4 37490599 37490876 -146797786 + L2 LINE L2 3021 3313 0 2128 125 7 0 chr4 37491015 37491311 -146797351 + AluSq SINE Alu 1 298 -15 9266 102 8 4 chr4 37491599 37492881 -146795781 + HSMAR1 DNA Mariner 1 1287 0 345 275 55 0 chr4 37492888 37492997 -146795665 + MIR SINE MIR 101 215 -47 362 264 0 0 chr4 37493017 37493108 -146795554 - MIR SINE MIR -3 259 169 414 309 55 25 chr4 37493663 37493864 -146794798 + MIR SINE MIR 2 208 -54 2338 71 0 0 chr4 37494143 37494438 -146794224 + AluY SINE Alu 1 295 -16 2411 120 66 20 chr4 37495456 37495676 -146792986 - MSTA LTR MaLR 0 428 220 2009 92 7 28 chr4 37495676 37495959 -146792703 - AluSq SINE Alu -21 292 16 2411 120 66 20 chr4 37495959 37496147 -146792515 - MSTA LTR MaLR -208 220 1 238 299 60 26 chr4 37496477 37496594 -146792068 + MLT1A1 LTR MaLR 4 124 -333 * 290 177 32 0 chr4 37496581 37496643 -146792019 + MLT1A1 LTR MaLR 292 355 -10 301 262 120 71 chr4 37496670 37496853 -146791809 - HAL1b LINE L1 -411 937 746 8587 93 0 3 chr4 37497848 37499885 -146788777 + L1PA7 LINE L1 4103 6154 0 612 84 0 12 chr4 37499887 37499970 -146788692 + THE1B LTR MaLR 234 315 -49 1272 240 108 68 chr4 37501079 37501624 -146787038 - MLT1F1 LTR MaLR 0 567 1 249 245 0 0 chr4 37501768 37501817 -146786845 - L2 LINE L2 -12 3260 3212 300 318 18 0 chr4 37501901 37502011 -146786651 - MLT1J LTR MaLR 0 511 400 185 304 36 0 chr4 37502822 37502878 -146785784 - MIR SINE MIR -104 104 47 3780 140 28 10 chr4 37503006 37503659 -146785003 + MER39 LTR ERV1 3 707 0 257 334 0 2 chr4 37503781 37503866 -146784796 - MIR SINE MIR -83 125 42 27 29 0 0 chr4 37504800 37504834 -146783828 + AT_rich Low_complexity Low_complexity 1 34 0 405 115 23 58 chr4 37505378 37505465 -146783197 + L1MA9 LINE L1 6095 6178 -134 2422 115 34 14 chr4 37505473 37505830 -146782832 - THE1B LTR MaLR 0 364 1 1292 107 10 0 chr4 37505830 37506027 -146782635 - THE1B-int LTR MaLR 0 1580 1382 459 173 35 0 chr4 37506030 37506203 -146782459 + (TA)n Simple_repeat Simple_repeat 2 180 0 438 173 41 0 chr4 37506218 37506539 -146782123 + (TA)n Simple_repeat Simple_repeat 1 334 0 199 68 0 45 chr4 37506542 37506586 -146782076 + (TTTAA)n Simple_repeat Simple_repeat 5 46 0 32 0 0 0 chr4 37506586 37506618 -146782044 + AT_rich Low_complexity Low_complexity 1 32 0 1281 110 0 0 chr4 37506628 37506801 -146781861 - THE1B LTR MaLR -191 173 1 331 140 168 28 chr4 37506802 37506872 -146781790 + L1MA9 LINE L1 6190 6249 -63 192 40 0 0 chr4 37506872 37506897 -146781765 + (CA)n Simple_repeat Simple_repeat 2 26 0 331 140 168 28 chr4 37506897 37506933 -146781729 + L1MA9 LINE L1 6249 6311 -1 2886 125 7 0 chr4 37507991 37508446 -146780216 - L1MA1 LINE L1 0 6302 5845 2003 138 31 0 chr4 37509174 37509464 -146779198 + AluSx SINE Alu 1 299 -13 180 442 0 17 chr4 37509931 37510051 -146778611 - MIR SINE MIR -73 135 18 796 254 151 15 chr4 37510607 37510879 -146777783 - L2 LINE L2 -5 3308 3000 1033 182 79 8 chr4 37511070 37511509 -146777153 - MER34 LTR ERV1 -19 523 25 253 342 84 40 chr4 37511693 37511829 -146776833 + MLT1K LTR MaLR 294 423 -165 1750 159 9 22 chr4 37511829 37512144 -146776518 - AluSx SINE Alu -1 311 1 253 342 84 40 chr4 37512144 37512282 -146776380 + MLT1K LTR MaLR 423 580 -8 635 201 46 118 chr4 37512390 37512653 -146776009 - MLT1A1 LTR MaLR -121 244 1 229 220 0 0 chr4 37512974 37513024 -146775638 - MER67B LTR ERV1 0 661 612 1370 228 46 11 chr4 37513051 37513402 -146775260 - MER31B LTR ERV1 -103 363 1 21 0 0 0 chr4 37513615 37513636 -146775026 + AT_rich Low_complexity Low_complexity 1 21 0 476 256 42 84 chr4 37513693 37513884 -146774778 + MER5A DNA MER1_type 6 188 -1 298 340 112 15 chr4 37513933 37514130 -146774532 - MIR SINE MIR -7 255 40 3244 167 18 70 chr4 37514137 37514861 -146773801 - LTR8 LTR ERV1 0 691 6 34 42 0 0 chr4 37516634 37516682 -146771980 + AT_rich Low_complexity Low_complexity 1 48 0 1197 239 118 20 chr4 37516906 37517261 -146771401 + MSTD LTR MaLR 1 390 -6 462 300 104 72 chr4 37518363 37518880 -146769782 + L2 LINE L2 1992 2525 -789 243 323 24 24 chr4 37519196 37519277 -146769385 + MLT1G1 LTR MaLR 469 552 -43 1740 189 101 90 chr4 37519277 37519790 -146768872 - MLT2B1 LTR ERVL -1 519 1 243 323 24 24 chr4 37519790 37519835 -146768827 + MLT1G1 LTR MaLR 551 595 0 315 339 85 16 chr4 37521324 37521513 -146767149 + MLT1J LTR MaLR 1 202 -309 333 132 0 0 chr4 37521574 37521627 -146767035 + MLT1J LTR MaLR 420 472 -39 24 0 0 0 chr4 37521706 37521730 -146766932 + AT_rich Low_complexity Low_complexity 1 24 0 2947 50 3 0 chr4 37523064 37523101 -146765561 + L1P LINE L1 4821 4856 -1290 3000 62 0 5 chr4 37523101 37523486 -146765176 - L1PA3 LINE L1 0 6155 5773 2947 50 3 0 chr4 37523486 37523824 -146764838 + L1P LINE L1 4856 5197 -949 326 368 74 13 chr4 37523901 37524132 -146764530 + L2 LINE L2 2632 2876 -438 316 309 0 0 chr4 37524583 37524677 -146763985 - L1MC4 LINE L1 -1335 6707 6614 247 200 17 0 chr4 37524785 37524845 -146763817 + CT-rich Low_complexity Low_complexity 1 61 0 243 267 23 35 chr4 37524876 37524962 -146763700 - L2 LINE L2 -71 3242 3158 2334 77 23 0 chr4 37525266 37525566 -146763096 + AluSg SINE Alu 3 309 -1 2202 271 80 37 chr4 37525997 37526313 -146762349 - L1MC4 LINE L1 0 8042 7741 240 35 0 0 chr4 37526313 37526342 -146762320 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2202 271 80 37 chr4 37526342 37527097 -146761565 - L1MC4 LINE L1 -301 7741 6925 228 233 103 69 chr4 37527144 37527260 -146761402 + MER5A DNA MER1_type 1 120 -69 2207 218 26 2 chr4 37527346 37527815 -146760847 - MER67D LTR ERV1 -34 480 1 394 333 0 0 chr4 37527817 37527928 -146760734 + L2 LINE L2 3162 3272 0 285 308 31 46 chr4 37528027 37528157 -146760505 + MER5B DNA MER1_type 1 128 -50 697 296 17 17 chr4 37528847 37529033 -146759629 - MIR SINE MIR 0 262 74 480 105 0 70 chr4 37529033 37529119 -146759543 - MADE1 DNA Mariner 0 80 1 697 296 17 17 chr4 37529119 37529165 -146759497 - MIR SINE MIR -187 75 30 901 225 23 28 chr4 37529191 37529409 -146759253 + MER20 DNA MER1_type 3 219 0 181 83 56 0 chr4 37529450 37529486 -146759176 + (TA)n Simple_repeat Simple_repeat 1 38 0 281 326 51 0 chr4 37530466 37530564 -146758098 - MIR3 SINE MIR -17 191 89 2251 107 3 0 chr4 37531129 37531429 -146757233 + AluSx SINE Alu 1 301 -11 31 26 0 0 chr4 37531859 37531897 -146756765 + AT_rich Low_complexity Low_complexity 1 38 0 455 295 266 0 chr4 37532211 37532418 -146756244 - MIR SINE MIR 0 262 1 237 308 58 10 chr4 37532583 37532687 -146755975 + L1MC5 LINE L1 6719 6827 -1134 2024 131 3 0 chr4 37532824 37533130 -146755532 + AluSg SINE Alu 1 307 0 193 226 113 19 chr4 37533132 37533185 -146755477 + L3 LINE CR1 896 953 -624 1303 219 49 31 chr4 37533195 37533548 -146755114 + MLT1A1 LTR MaLR 3 365 0 767 313 68 26 chr4 37535147 37535531 -146753131 - MLT1J1 LTR MaLR -34 412 13 540 250 121 1 chr4 37535566 37535712 -146752950 - MLT1J2 LTR MaLR -237 172 13 575 242 114 0 chr4 37535761 37535893 -146752769 - MLT1J1 LTR MaLR -287 159 13 23 0 0 0 chr4 37535968 37535991 -146752671 + AT_rich Low_complexity Low_complexity 1 23 0 1739 159 7 14 chr4 37536264 37536559 -146752103 + AluJo SINE Alu 11 303 -9 1242 167 42 0 chr4 37536716 37536956 -146751706 - L1MA9 LINE L1 -189 6123 5874 954 149 80 5 chr4 37536956 37537140 -146751522 + L1MA9 LINE L1 6111 6312 0 693 185 92 56 chr4 37538478 37538673 -146749989 + L2 LINE L2 3112 3313 0 260 263 132 9 chr4 37539013 37539127 -146749535 - MER67D LTR ERV1 -3 511 384 1454 162 85 85 chr4 37539188 37539559 -146749103 - MER67C LTR ERV1 -242 272 1 393 259 25 81 chr4 37539975 37540172 -146748490 - MIR SINE MIR -75 187 2 21 0 0 0 chr4 37540931 37540952 -146747710 + AT_rich Low_complexity Low_complexity 1 21 0 211 310 20 10 chr4 37541269 37541369 -146747293 + CT-rich Low_complexity Low_complexity 5 105 0 513 348 58 5 chr4 37541778 37542002 -146746660 - MIR SINE MIR -9 253 18 654 201 34 98 chr4 37542579 37542813 -146745849 - LTR12 LTR ERV1 -258 456 238 2244 114 0 0 chr4 37543836 37544135 -146744527 + AluSx SINE Alu 1 299 -13 384 215 101 108 chr4 37544824 37544982 -146743680 + MIR SINE MIR 65 221 -41 428 331 12 54 chr4 37545754 37545920 -146742742 - MER91A DNA MER1_type -3 193 35 300 278 113 17 chr4 37546185 37546300 -146742362 - MIR SINE MIR -39 223 98 737 251 158 43 chr4 37546345 37546807 -146741855 - MER113 DNA MER1_type? -3 518 4 564 317 54 18 chr4 37546870 37547094 -146741568 + MIR SINE MIR 24 255 -7 34 72 0 0 chr4 37547173 37547242 -146741420 + AT_rich Low_complexity Low_complexity 1 69 0 24 0 0 0 chr4 37548003 37548027 -146740635 + AT_rich Low_complexity Low_complexity 1 24 0 1455 105 22 4 chr4 37548029 37548257 -146740405 - L1PB1 LINE L1 0 6151 5920 22 35 0 0 chr4 37548565 37548594 -146740068 + AT_rich Low_complexity Low_complexity 1 29 0 275 252 90 114 chr4 37548889 37549179 -146739483 - MLT1J LTR MaLR -130 381 99 261 250 164 31 chr4 37549263 37549328 -146739334 - L2 LINE L2 -132 3181 3126 183 80 0 0 chr4 37549328 37549353 -146739309 + (TA)n Simple_repeat Simple_repeat 1 25 0 261 250 164 31 chr4 37549353 37549415 -146739247 - L2 LINE L2 -187 3126 3037 5301 249 71 24 chr4 37549418 37550684 -146737978 + L1MB7 LINE L1 5 1210 -5434 7105 65 4 0 chr4 37550684 37551999 -146736663 + L1PA8 LINE L1 4855 6172 0 5301 249 71 24 chr4 37551999 37553659 -146735003 + L1MB7 LINE L1 1210 3108 -3536 3929 201 24 38 chr4 37553655 37553689 -146734973 + L1MB7 LINE L1 5472 5505 -1177 * 2409 62 3 0 chr4 37553689 37553979 -146734683 + AluY SINE Alu 1 291 -20 3929 201 24 38 chr4 37553979 37555163 -146733499 + L1MB7 LINE L1 5505 6664 -18 211 391 22 0 chr4 37555173 37555265 -146733397 - L2 LINE L2 -252 3061 2968 202 328 57 41 chr4 37555697 37555819 -146732843 + MIR SINE MIR 136 259 -3 32 57 0 0 chr4 37555949 37556002 -146732660 + AT_rich Low_complexity Low_complexity 1 53 0 180 111 0 0 chr4 37556774 37556801 -146731861 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2328 164 16 27 chr4 37557041 37557491 -146731171 - MER65A LTR ERV1 0 445 1 11810 222 34 39 chr4 37557622 37562138 -146726524 - L1P5 LINE L1 -383 6476 1965 581 346 12 19 chr4 37562323 37562644 -146726018 - L1P5 LINE L1 -5833 1017 699 337 367 6 6 chr4 37562708 37562885 -146725777 - L1PBa LINE L1 -5258 1605 1429 322 355 111 29 chr4 37562856 37563198 -146725464 - L1PBa LINE L1 -6322 541 148 * 217 0 61 0 chr4 37563198 37563231 -146725431 + (TTG)n Simple_repeat Simple_repeat 2 36 0 322 355 111 29 chr4 37563231 37563367 -146725295 - L1PBa LINE L1 -6715 148 24 223 261 127 45 chr4 37563881 37564015 -146724647 - L2 LINE L2 -2195 1119 975 1229 200 79 41 chr4 37565778 37566068 -146722594 + AluJo SINE Alu 1 301 -1 1812 139 7 0 chr4 37566656 37566957 -146721705 + L1PA13 LINE L1 5861 6163 0 2756 224 32 13 chr4 37567621 37568254 -146720408 + MER82 DNA MER2_type 7 651 -2 880 296 61 40 chr4 37568422 37568848 -146719814 - LTR16A LTR ERVL 0 450 16 2021 194 59 30 chr4 37568942 37569433 -146719229 + MLT1D LTR MaLR 1 505 0 198 0 0 0 chr4 37569587 37569609 -146719053 + (TTA)n Simple_repeat Simple_repeat 1 22 0 406 319 58 90 chr4 37569932 37570242 -146718420 - L2 LINE L2 -49 3223 2924 927 292 8 8 chr4 37570267 37570517 -146718145 - MIR SINE MIR -10 252 3 454 271 116 40 chr4 37570733 37570958 -146717704 + MIR SINE MIR 11 252 -10 322 297 103 65 chr4 37571149 37571334 -146717328 + MIR3 SINE MIR 5 196 -12 183 359 41 69 chr4 37571452 37571597 -146717065 + MIR3 SINE MIR 4 144 -64 2003 145 0 0 chr4 37571651 37571954 -146716708 + AluSg SINE Alu 1 303 -7 191 333 108 18 chr4 37572117 37572228 -146716434 + L2 LINE L2 3182 3302 -11 11088 31 0 0 chr4 37572400 37573736 -146714926 - L1P LINE L1 -1899 4247 2912 7856 10 0 7 chr4 37573736 37574995 -146713667 + L1PA2 LINE L1 4899 6151 -4 474 237 22 7 chr4 37575116 37575255 -146713407 + L1ME4a LINE L1 5965 6105 -16 1850 180 18 6 chr4 37575468 37575807 -146712855 - MER2 DNA MER2_type 0 344 2 388 145 14 0 chr4 37578497 37578566 -146710096 - L1PA16 LINE L1 -9 6157 6088 23 54 0 0 chr4 37578730 37578767 -146709895 + AT_rich Low_complexity Low_complexity 1 37 0 382 261 17 67 chr4 37579250 37579369 -146709293 + MLT1K LTR MaLR 226 338 -250 255 233 27 14 chr4 37579439 37579512 -146709150 + MLT1K LTR MaLR 515 588 0 251 185 123 0 chr4 37579522 37579587 -146709075 + MIR SINE MIR 91 163 -99 2362 164 10 16 chr4 37580071 37580456 -146708206 + LTR32 LTR ERVL 89 471 0 249 368 48 32 chr4 37580597 37580722 -146707940 + MIR3 SINE MIR 28 154 -54 2151 109 17 0 chr4 37581789 37581804 -146706858 - AluSg SINE Alu 0 310 297 210 33 33 0 chr4 37581804 37581834 -146706828 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 2151 109 17 0 chr4 37581834 37582112 -146706550 - AluSg SINE Alu -13 297 1 26 30 0 0 chr4 37582643 37582676 -146705986 + AT_rich Low_complexity Low_complexity 1 33 0 363 328 74 59 chr4 37584652 37585058 -146703604 - L2 LINE L2 -4 3309 2898 536 322 43 111 chr4 37585278 37585324 -146703338 - L2 LINE L2 -691 2623 2575 1166 184 0 40 chr4 37585324 37585552 -146703110 + MER20 DNA MER1_type 1 219 0 536 322 43 111 chr4 37585552 37586633 -146702029 - L2 LINE L2 -739 2575 1572 646 247 25 16 chr4 37587123 37587314 -146701348 + MIR SINE MIR 9 205 -57 246 269 231 0 chr4 37588505 37588613 -146700049 - MER5A DNA MER1_type -1 188 56 413 350 22 36 chr4 37589407 37589681 -146698981 + L2 LINE L2 1070 1339 -1975 188 386 11 11 chr4 37589711 37589799 -146698863 + MIR SINE MIR 14 101 -161 5415 154 53 8 chr4 37589812 37591209 -146697453 - L1PA16 LINE L1 -9 6157 4718 473 301 8 0 chr4 37591217 37591340 -146697322 + MIR SINE MIR 102 225 -37 323 309 227 27 chr4 37591380 37591533 -146697129 + L2 LINE L2 1397 1518 -1796 1420 211 62 3 chr4 37591533 37591855 -146696807 + MER58B DNA MER1_type 1 341 0 323 309 227 27 chr4 37591855 37592252 -146696410 + L2 LINE L2 1518 2057 -1257 338 24 0 0 chr4 37592469 37592511 -146696151 - MADE1 DNA Mariner 0 80 39 579 149 70 0 chr4 37592731 37592845 -146695817 - L1MB3 LINE L1 -2 6181 6060 221 263 40 50 chr4 37592903 37593002 -146695660 + L2 LINE L2 3173 3270 -2 2498 79 0 0 chr4 37593678 37593981 -146694681 + AluSc SINE Alu 3 305 -4 381 231 54 68 chr4 37594448 37594595 -146694067 + MLT1H LTR MaLR 210 354 -195 249 286 75 25 chr4 37594645 37594806 -146693856 + L1ME LINE L1 5564 5732 -389 319 88 18 0 chr4 37594887 37594944 -146693718 + L1PA6 LINE L1 6097 6154 0 22 0 0 0 chr4 37594944 37594966 -146693696 + AT_rich Low_complexity Low_complexity 1 22 0 7422 255 59 20 chr4 37594966 37595523 -146693139 + L1MEc LINE L1 1713 2247 -3968 880 216 50 40 chr4 37595523 37595745 -146692917 - MER58A DNA MER1_type 0 224 1 7422 255 59 20 chr4 37595745 37598358 -146690304 + L1MEc LINE L1 2247 4988 -1227 1486 216 108 19 chr4 37598609 37599113 -146689549 - MLT2F LTR ERVL -68 595 1 305 214 71 65 chr4 37599114 37599268 -146689394 - MER103 DNA DNA -1 165 11 763 282 62 4 chr4 37599743 37599970 -146688692 + MIR SINE MIR 2 241 -21 456 284 71 22 chr4 37600028 37600211 -146688451 - MIR SINE MIR -65 197 6 243 103 0 0 chr4 37601017 37601056 -146687606 + (TG)n Simple_repeat Simple_repeat 2 40 0 2287 179 19 9 chr4 37601997 37602416 -146686246 + MER95 LTR ERV 9 431 0 237 201 5 5 chr4 37603690 37603749 -146684913 + MIR SINE MIR 71 130 -78 2375 65 16 3 chr4 37603756 37604063 -146684599 - AluY SINE Alu 0 311 1 2119 102 7 3 chr4 37604065 37604360 -146684302 - AluSx SINE Alu -15 297 2 303 229 180 25 chr4 37604391 37604513 -146684149 + MIR SINE MIR 8 148 -114 2080 176 8 6 chr4 37604514 37604878 -146683784 + MLT1A1 LTR MaLR 1 365 0 1854 115 67 7 chr4 37605152 37605445 -146683217 + AluSx SINE Alu 1 309 0 352 337 51 20 chr4 37605488 37605684 -146682978 + MIR SINE MIR 53 254 -8 2237 86 3 17 chr4 37605934 37606235 -146682427 + AluY SINE Alu 1 297 -14 393 340 84 20 chr4 37606268 37606333 -146682329 - MLT1K LTR MaLR -7 581 522 1032 214 182 38 chr4 37606333 37606679 -146681983 + MSTD LTR MaLR 1 396 0 393 340 84 20 chr4 37606679 37606816 -146681846 - MLT1K LTR MaLR -66 522 366 819 299 47 58 chr4 37606882 37607330 -146681332 + ERVL LTR ERVL 4470 4912 -852 288 384 60 0 chr4 37607331 37607516 -146681146 + ERVL LTR ERVL 4811 5006 -648 294 306 24 24 chr4 37607696 37607820 -146680842 + LTR16A1 LTR ERVL 23 146 -311 337 229 99 104 chr4 37607838 37608039 -146680623 + LTR16A LTR ERVL 251 450 0 421 277 220 0 chr4 37608039 37608180 -146680482 - MIR SINE MIR -4 258 87 567 211 67 62 chr4 37608867 37609075 -146679587 + MER112 DNA MER1_type 2 210 -50 214 355 97 32 chr4 37609119 37609274 -146679388 - MIR SINE MIR -48 214 50 261 303 184 13 chr4 37610323 37610475 -146678187 - MER5B DNA MER1_type 0 178 1 370 284 74 65 chr4 37610487 37610702 -146677960 + L1M4 LINE L1 4733 4949 -1197 31 44 0 0 chr4 37610725 37610770 -146677892 + AT_rich Low_complexity Low_complexity 1 45 0 12071 154 20 13 chr4 37611440 37614789 -146673873 - L1MA1 LINE L1 -29 7692 4313 2111 133 68 6 chr4 37614790 37615143 -146673519 + THE1C LTR MaLR 1 375 0 9366 140 43 10 chr4 37615143 37616661 -146672001 + THE1C-int LTR MaLR 1 1569 -11 2108 143 41 14 chr4 37616670 37617035 -146671627 + THE1C LTR MaLR 1 375 0 10209 210 66 25 chr4 37617035 37620862 -146667800 - L1MA1 LINE L1 -3249 4316 15 348 364 70 17 chr4 37620870 37621172 -146667490 - L1ME3 LINE L1 -216 5946 5629 348 253 120 51 chr4 37621189 37621347 -146667315 - L1ME3 LINE L1 -725 5437 5269 2189 140 36 0 chr4 37621393 37621778 -146666884 - L1MA9 LINE L1 -2 6310 5912 868 170 88 0 chr4 37621781 37621854 -146666808 + L1MA9 LINE L1 5705 5770 -542 213 94 0 0 chr4 37621854 37621886 -146666776 + (CA)n Simple_repeat Simple_repeat 2 33 0 868 170 88 0 chr4 37621886 37621983 -146666679 + L1MA9 LINE L1 5770 5890 -422 2125 132 0 3 chr4 37622213 37622516 -146666146 + AluSg SINE Alu 1 302 -8 22 56 0 0 chr4 37622559 37622595 -146666067 + AT_rich Low_complexity Low_complexity 1 36 0 196 369 12 12 chr4 37622699 37622783 -146665879 - MIR3 SINE MIR -50 158 75 22 0 0 0 chr4 37622797 37622819 -146665843 + AT_rich Low_complexity Low_complexity 1 22 0 584 292 36 43 chr4 37623557 37623986 -146664676 - LTR33 LTR ERVL -19 502 43 279 0 0 0 chr4 37624948 37624979 -146663683 + (TG)n Simple_repeat Simple_repeat 2 32 0 180 0 0 0 chr4 37625182 37625202 -146663460 + (CAA)n Simple_repeat Simple_repeat 2 21 0 195 315 250 0 chr4 37625227 37625335 -146663327 - L2 LINE L2 -2 3270 3136 261 295 27 27 chr4 37625640 37625752 -146662910 + MLT1L LTR MaLR 361 472 -143 356 244 76 30 chr4 37626054 37626185 -146662477 + MIR SINE MIR 93 229 -33 511 170 62 18 chr4 37626634 37626746 -146661916 - MER74B LTR ERVL 0 622 506 2111 179 55 21 chr4 37626760 37627180 -146661482 + MLT2B1 LTR ERVL 7 440 -80 2005 110 16 50 chr4 37627192 37627633 -146661029 + MER51B LTR ERV1 3 377 0 239 121 0 0 chr4 37627633 37627666 -146660996 + MLT2B1 LTR ERVL 483 515 0 * 1849 209 92 16 chr4 37627666 37628090 -146660572 - MER74B LTR ERVL -121 501 46 386 181 0 28 chr4 37628545 37628689 -146659973 + (TA)n Simple_repeat Simple_repeat 2 141 0 270 176 0 0 chr4 37628774 37628825 -146659837 + (TA)n Simple_repeat Simple_repeat 1 51 0 489 146 13 26 chr4 37628914 37629065 -146659597 + (TA)n Simple_repeat Simple_repeat 2 150 0 200 303 22 0 chr4 37629097 37629186 -146659476 + (TA)n Simple_repeat Simple_repeat 1 91 0 414 313 15 8 chr4 37629264 37629395 -146659267 + L2 LINE L2 3182 3313 0 23 0 0 0 chr4 37630073 37630096 -146658566 + AT_rich Low_complexity Low_complexity 1 23 0 2150 113 0 0 chr4 37630240 37630522 -146658140 - AluSx SINE Alu -30 282 1 534 214 45 0 chr4 37630577 37630689 -146657973 + MER63 DNA MER1_type 1 743 -319 795 239 34 6 chr4 37630915 37631091 -146657571 + MER5A DNA MER1_type 1 181 -8 2053 146 60 3 chr4 37631136 37631505 -146657157 - MLT1B LTR MaLR 0 390 1 23 33 0 0 chr4 37631510 37631540 -146657122 + AT_rich Low_complexity Low_complexity 1 30 0 2137 125 7 0 chr4 37632281 37632577 -146656085 - AluSx SINE Alu -14 298 1 28 0 0 0 chr4 37632674 37632702 -146655960 + AT_rich Low_complexity Low_complexity 1 28 0 339 346 43 25 chr4 37633001 37633163 -146655499 - L3 LINE CR1 -3 1574 1410 262 355 59 21 chr4 37633373 37633559 -146655103 + L2 LINE L2 1698 1890 -1424 392 333 50 81 chr4 37633973 37634673 -146653989 + L2 LINE L2 2301 3038 -234 863 331 90 44 chr4 37634680 37635373 -146653289 - L2 LINE L2 0 3313 2547 2334 128 43 0 chr4 37635373 37635724 -146652938 + MER47A DNA MER2_type 1 366 0 863 331 90 44 chr4 37635724 37636092 -146652570 - L2 LINE L2 -766 2547 2197 30 27 0 0 chr4 37636095 37636132 -146652530 + AT_rich Low_complexity Low_complexity 1 37 0 563 306 69 25 chr4 37636136 37636381 -146652281 - MIR SINE MIR 0 262 7 182 289 0 0 chr4 37636385 37636430 -146652232 + L2 LINE L2 3269 3313 0 349 286 67 39 chr4 37636510 37636688 -146651974 - L3 LINE CR1 -646 931 749 2672 99 19 0 chr4 37636970 37637344 -146651318 + L1PA10 LINE L1 5784 6164 -4 329 317 156 18 chr4 37637721 37637888 -146650774 + MIR SINE MIR 49 238 -24 23 0 0 0 chr4 37638087 37638110 -146650552 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 37639693 37639714 -146648948 + AT_rich Low_complexity Low_complexity 1 21 0 1703 166 43 6 chr4 37639974 37640198 -146648464 - MER44D DNA MER2_type -1882 609 395 365 39 20 0 chr4 37640198 37640249 -146648413 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 1703 166 43 6 chr4 37640249 37640350 -146648312 - MER44D DNA MER2_type -2096 395 2 793 222 11 21 chr4 37640552 37640741 -146647921 + MER5A DNA MER1_type 2 188 -1 310 314 10 0 chr4 37640831 37640933 -146647729 + HERV16 LTR ERVL 1110 1212 -3784 216 0 0 0 chr4 37640956 37640980 -146647682 + (A)n Simple_repeat Simple_repeat 1 24 0 1113 287 201 37 chr4 37641252 37641519 -146647143 + HERV16 LTR ERVL 1606 1828 -3168 2306 151 8 60 chr4 37641519 37641558 -146647104 + MER65A LTR ERV1 1 40 -405 198 0 0 0 chr4 37641558 37641580 -146647082 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2306 151 8 60 chr4 37641580 37642009 -146646653 + MER65A LTR ERV1 40 445 0 1113 287 201 37 chr4 37642009 37642748 -146645914 + HERV16 LTR ERVL 1828 2726 -2270 553 272 73 39 chr4 37642976 37643208 -146645454 + MLT1I LTR MaLR 163 402 -7 196 269 169 50 chr4 37643864 37644024 -146644638 + L2 LINE L2 2098 2276 -1038 2242 96 7 3 chr4 37644379 37644672 -146643990 - AluSq SINE Alu -19 294 1 1250 192 62 19 chr4 37645361 37645730 -146642932 - MER3 DNA MER1_type 0 2618 2234 609 164 36 0 chr4 37645733 37645843 -146642819 - MER3 DNA MER1_type -47 162 49 562 277 52 69 chr4 37646357 37646479 -146642183 + HAL1 LINE L1 51 174 -2333 1833 186 37 8 chr4 37646479 37646834 -146641828 - MLT1A1 LTR MaLR 0 365 1 562 277 52 69 chr4 37646834 37647058 -146641604 + HAL1 LINE L1 174 391 -2116 2283 124 30 25 chr4 37647098 37647460 -146641202 + THE1B LTR MaLR 1 364 0 1482 212 123 64 chr4 37647500 37648094 -146640568 - MLT1E2 LTR MaLR 0 626 3 859 273 80 33 chr4 37648130 37648467 -146640195 + HAL1 LINE L1 496 848 -1659 23 33 0 0 chr4 37648467 37648497 -146640165 + AT_rich Low_complexity Low_complexity 1 30 0 2406 184 9 19 chr4 37648635 37649065 -146639597 + MSTC LTR MaLR 1 426 -2 2157 121 3 0 chr4 37649158 37649456 -146639206 - AluSp SINE Alu -14 299 1 544 265 20 20 chr4 37649742 37649893 -146638769 - MIR SINE MIR -110 152 2 298 282 14 0 chr4 37650039 37650110 -146638552 + L2 LINE L2 3195 3266 -47 192 367 163 0 chr4 37651791 37651889 -146636773 - L2 LINE L2 -19 3253 3140 183 284 15 30 chr4 37652826 37652893 -146635769 - L2 LINE L2 -2897 417 352 302 222 0 25 chr4 37652969 37653050 -146635612 - L1ME4a LINE L1 -3 6118 6040 649 318 86 21 chr4 37653112 37653641 -146635021 - L1ME4a LINE L1 -285 5836 5259 21 36 0 0 chr4 37653710 37653738 -146634924 + AT_rich Low_complexity Low_complexity 1 28 0 2139 141 0 3 chr4 37653780 37654092 -146634570 - AluSq SINE Alu -2 311 1 21 0 0 0 chr4 37654708 37654729 -146633933 + AT_rich Low_complexity Low_complexity 1 21 0 246 42 62 0 chr4 37655556 37655604 -146633058 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 261 283 28 9 chr4 37655974 37656080 -146632582 + L1ME3A LINE L1 5817 5924 -246 1329 291 69 12 chr4 37656350 37656842 -146631820 - LTR33 LTR ERVL 0 521 2 362 316 38 48 chr4 37657181 37657472 -146631190 + L1ME LINE L1 609 896 -5174 3020 256 39 25 chr4 37657569 37657650 -146631012 + ERVL LTR ERVL 3598 3676 -2088 2281 101 0 3 chr4 37657650 37657956 -146630706 + AluSq SINE Alu 1 305 -8 3020 256 39 25 chr4 37657956 37658745 -146629917 + ERVL LTR ERVL 3676 4480 -1284 972 294 27 61 chr4 37658743 37659185 -146629477 + ERVL LTR ERVL 4951 5377 -387 * 4090 184 27 0 chr4 37659188 37659374 -146629288 - MER44D DNA MER2_type -1884 603 423 2339 101 48 25 chr4 37659374 37659730 -146628932 - THE1B LTR MaLR 0 364 1 4090 184 27 0 chr4 37659730 37660254 -146628408 - MER44D DNA MER2_type -2064 423 2 315 265 173 12 chr4 37660501 37660663 -146627999 + LTR41 LTR ERVL 584 771 -2 410 300 146 4 chr4 37660663 37660916 -146627746 + L1ME LINE L1 2080 2368 -3712 238 248 18 80 chr4 37661082 37661195 -146627467 + L1ME LINE L1 2590 2695 -3385 722 244 17 28 chr4 37661302 37661482 -146627180 - MER63A DNA MER1_type -30 180 3 403 327 93 30 chr4 37661483 37661783 -146626879 + L2 LINE L2 2283 2601 -713 811 0 20 0 chr4 37662209 37662308 -146626354 + (TAGA)n Simple_repeat Simple_repeat 1 101 0 740 294 86 53 chr4 37662889 37663296 -146625366 - MLT1J LTR MaLR -21 425 36 379 306 71 18 chr4 37665357 37665527 -146623135 + MIR SINE MIR 48 226 -36 556 130 0 0 chr4 37665527 37665619 -146623043 + Ricksha DNA DNA 9 100 -3146 325 167 0 0 chr4 37665626 37665686 -146622976 + Ricksha DNA DNA 252 311 -1735 4238 147 14 0 chr4 37665695 37666396 -146622266 + Ricksha DNA DNA 2506 3216 -30 180 333 0 0 chr4 37666410 37666461 -146622201 + MIR SINE MIR 210 260 -2 279 259 85 22 chr4 37667135 37667270 -146621392 - MIR SINE MIR -45 163 51 183 42 0 0 chr4 37667937 37667961 -146620701 + (T)n Simple_repeat Simple_repeat 1 24 0 5369 126 29 9 chr4 37668004 37668493 -146620169 - L1PA15 LINE L1 -5 6160 5682 2318 52 42 0 chr4 37668493 37668779 -146619883 - AluY SINE Alu -13 298 1 5369 126 29 9 chr4 37668779 37669856 -146618806 - L1PA15 LINE L1 -483 5682 4585 341 265 143 7 chr4 37669915 37670062 -146618600 + MLT1I LTR MaLR 5 171 -238 286 279 0 13 chr4 37670222 37670301 -146618361 + MLT1I LTR MaLR 322 399 -10 258 262 75 37 chr4 37670453 37670560 -146618102 - MLT1J LTR MaLR -158 353 243 1651 197 37 20 chr4 37670596 37670952 -146617710 - MLT1A1 LTR MaLR -2 465 1 1221 167 62 4 chr4 37671084 37671139 -146617523 + MER50 LTR ERV1 1 51 -683 354 91 0 0 chr4 37671139 37671194 -146617468 + (CA)n Simple_repeat Simple_repeat 1 55 0 1221 167 62 4 chr4 37671194 37671365 -146617297 + MER50 LTR ERV1 51 240 -494 * 1618 140 3 107 chr4 37671349 37671685 -146616977 + MER50 LTR ERV1 434 734 0 1924 154 11 60 chr4 37672253 37672370 -146616292 + MER7A DNA MER2_type 1 122 -2916 1846 130 73 45 chr4 37672370 37672724 -146615938 - THE1B LTR MaLR 0 364 1 11564 102 3 0 chr4 37672734 37674305 -146614357 - THE1B-int LTR MaLR -4 1576 1 2053 131 54 23 chr4 37674305 37674656 -146614006 - THE1B LTR MaLR 0 364 3 1924 154 11 60 chr4 37674656 37674890 -146613772 + MER7A DNA MER2_type 129 344 -2 291 298 37 81 chr4 37674900 37675061 -146613601 - L2 LINE L2 -173 3099 2946 346 253 0 48 chr4 37675982 37676065 -146612597 - MIR SINE MIR -21 241 163 2252 92 38 14 chr4 37676697 37677065 -146611597 - L1MA1 LINE L1 0 6302 5926 276 114 0 0 chr4 37677066 37677110 -146611552 + L1 LINE L1 4780 4823 -1323 2128 106 72 58 chr4 37677475 37677834 -146610828 - THE1B LTR MaLR 0 364 1 360 250 116 27 chr4 37678027 37678139 -146610523 - L2 LINE L2 -5 3308 3187 353 290 61 38 chr4 37679180 37679311 -146609351 - MIR SINE MIR -70 192 59 1743 136 59 59 chr4 37679319 37679694 -146608968 + THE1C LTR MaLR 1 375 0 363 96 0 0 chr4 37679887 37679939 -146608723 + (CA)n Simple_repeat Simple_repeat 1 52 0 1925 168 77 35 chr4 37679939 37680344 -146608318 - MSTA LTR MaLR -1 427 6 380 20 20 0 chr4 37680344 37680393 -146608269 + (TC)n Simple_repeat Simple_repeat 1 50 0 342 115 0 0 chr4 37680392 37680444 -146608218 + (CA)n Simple_repeat Simple_repeat 1 52 0 * 325 300 173 0 chr4 37681115 37681265 -146607397 - MIR SINE MIR -19 243 68 258 164 0 0 chr4 37681384 37681439 -146607223 + (CAT)n Simple_repeat Simple_repeat 2 56 0 203 393 17 8 chr4 37681508 37681625 -146607037 + L3b LINE CR1 1129 1246 -337 23 0 0 0 chr4 37681634 37681657 -146607005 + AT_rich Low_complexity Low_complexity 1 23 0 361 255 24 155 chr4 37681685 37682014 -146606648 - L1ME4a LINE L1 -67 6054 5706 399 337 91 36 chr4 37682069 37682321 -146606341 - L1ME4a LINE L1 -576 5586 5321 242 304 42 52 chr4 37682704 37682895 -146605767 + L2 LINE L2 2067 2255 -1059 628 283 113 13 chr4 37683356 37683586 -146605076 - MIR SINE MIR -1 261 9 237 297 121 15 chr4 37683686 37683828 -146604834 + MIR SINE MIR 17 146 -62 529 287 27 37 chr4 37685305 37685493 -146603169 + MER117 DNA MER1_type 5 190 -7 334 259 26 26 chr4 37685556 37685672 -146602990 - L1ME LINE L1 -513 5657 5542 229 299 102 48 chr4 37685703 37685850 -146602812 - MIR SINE MIR -95 167 13 23 68 0 0 chr4 37686473 37686517 -146602145 + AT_rich Low_complexity Low_complexity 1 44 0 650 191 20 41 chr4 37686577 37686724 -146601938 + MER70B LTR ERVL 12 155 -423 2367 215 8 12 chr4 37686724 37687217 -146601445 + MER70B LTR ERVL 88 578 0 279 347 0 0 chr4 37689393 37689468 -146599194 - MIR3 SINE MIR -23 185 111 344 317 42 8 chr4 37689659 37689779 -146598883 - MIR SINE MIR -111 151 28 371 275 70 48 chr4 37690509 37690712 -146597950 + MIR SINE MIR 45 262 0 583 108 20 39 chr4 37691354 37691456 -146597206 - L1PA16 LINE L1 0 6166 6067 2356 56 0 7 chr4 37692478 37692763 -146595899 - AluYb8 SINE Alu -13 305 23 610 224 91 12 chr4 37693672 37693837 -146594825 - MER45A DNA AcHobo 0 178 1 267 278 26 17 chr4 37694005 37694120 -146594542 + MLT1J2 LTR MaLR 32 147 -303 197 175 88 113 chr4 37694652 37694732 -146593930 + MIR SINE MIR 126 203 -59 654 241 91 52 chr4 37694940 37695375 -146593287 + MLT1C LTR MaLR 1 467 0 301 326 20 0 chr4 37696516 37696614 -146592048 + L2 LINE L2 3173 3272 0 3492 117 14 4 chr4 37698059 37698565 -146590097 - MER9 LTR ERVK 0 511 1 309 249 158 45 chr4 37700126 37700303 -146588359 + Charlie7 DNA MER1_type 1875 2071 -541 2168 128 3 0 chr4 37702305 37702602 -146586060 + AluJb SINE Alu 1 298 -14 1259 122 0 12 chr4 37702799 37702971 -146585691 + AluY SINE Alu 1 170 -141 323 43 0 22 chr4 37703450 37703496 -146585166 + (CA)n Simple_repeat Simple_repeat 2 46 0 287 312 19 32 chr4 37703641 37703798 -146584864 + MER112 DNA MER1_type 3 157 -103 1454 112 70 0 chr4 37704662 37704903 -146583759 - MSTA LTR MaLR 0 428 171 724 86 0 0 chr4 37705005 37705098 -146583564 + MER50 LTR ERV1 198 290 -444 2129 182 92 25 chr4 37705109 37705586 -146583076 + LTR22 LTR ERVK 1 509 0 * 2301 179 21 9 chr4 37705586 37706017 -146582645 + MER50 LTR ERV1 299 734 0 1862 136 176 16 chr4 37707004 37707373 -146581289 - MSTA LTR MaLR 0 428 1 341 22 22 0 chr4 37707473 37707519 -146581143 + (TG)n Simple_repeat Simple_repeat 1 47 0 25 0 0 0 chr4 37707644 37707669 -146580993 + AT_rich Low_complexity Low_complexity 1 25 0 580 241 63 120 chr4 37708598 37708947 -146579715 + MLT1C LTR MaLR 62 390 0 812 250 29 41 chr4 37709123 37709439 -146579223 + MLT1E2 LTR MaLR 278 589 -37 399 266 30 0 chr4 37709778 37709927 -146578735 - MIR SINE MIR -66 142 17 1475 219 35 33 chr4 37711267 37711723 -146576939 - MLT1C LTR MaLR -5 462 6 2148 117 0 3 chr4 37712359 37712659 -146576003 + AluSq SINE Alu 1 299 -14 1125 281 123 28 chr4 37713577 37714211 -146574451 - L1MCc LINE L1 -5072 1351 658 285 327 46 13 chr4 37714251 37714404 -146574258 - L1MCc LINE L1 -5868 555 398 449 279 61 5 chr4 37714435 37714632 -146574030 - L1MCc LINE L1 -6193 230 23 282 231 123 23 chr4 37714953 37715083 -146573579 - MLT1C LTR MaLR -315 152 10 977 142 117 95 chr4 37715146 37715213 -146573449 - MLT1A1 LTR MaLR 0 396 332 1737 163 24 10 chr4 37715213 37715502 -146573160 + AluJb SINE Alu 5 297 -15 977 142 117 95 chr4 37715502 37715777 -146572885 - MLT1A1 LTR MaLR -64 332 1 232 264 54 47 chr4 37715886 37716034 -146572628 + MLT1I LTR MaLR 20 168 -241 308 141 7 30 chr4 37716137 37716209 -146572453 + MLT1J2 LTR MaLR 303 422 -28 1232 68 0 0 chr4 37716300 37716463 -146572199 + L1P3 LINE L1 5349 5511 -661 208 272 0 52 chr4 37717978 37718151 -146570511 + (CAGG)n Simple_repeat Simple_repeat 4 167 0 610 214 18 80 chr4 37719369 37719593 -146569069 + L1M4 LINE L1 2618 2827 -3319 * 2434 78 3 3 chr4 37719594 37719902 -146568760 + AluYb8 SINE Alu 1 308 -10 6408 27 0 1 chr4 37719902 37720673 -146567989 - L1P LINE L1 -1816 4330 3559 1123 277 101 36 chr4 37720984 37721678 -146566984 + MER21B LTR ERV1 9 747 -116 266 239 0 30 chr4 37722614 37722681 -146565981 + MER81 DNA DNA 23 87 -27 6426 82 14 0 chr4 37726483 37727337 -146561325 + HERVK9 LTR ERVK 4769 5634 -282 1201 95 0 11 chr4 37727404 37727583 -146561079 + HERVK9 LTR ERVK 5608 5784 -132 534 99 0 0 chr4 37728865 37728956 -146559706 + (TC)n Simple_repeat Simple_repeat 1 91 0 278 255 67 92 chr4 37729841 37730155 -146558507 + L1MCc LINE L1 1163 1468 -4955 4349 45 0 0 chr4 37730851 37731406 -146557256 + L1P LINE L1 1554 2108 -4038 512 286 0 7 chr4 37731510 37731650 -146557012 + MSTD LTR MaLR 1 139 -257 864 156 0 0 chr4 37731678 37731858 -146556804 + CT-rich Low_complexity Low_complexity 1 180 0 841 231 17 22 chr4 37731870 37732101 -146556561 + MSTD LTR MaLR 196 396 0 622 327 90 29 chr4 37733246 37733769 -146554893 - LTR67 LTR ERVL -1 556 2 183 294 20 0 chr4 37733925 37733976 -146554686 + MIR SINE MIR 72 123 -139 * 845 309 126 42 chr4 37733934 37734607 -146554055 + L2 LINE L2 2546 3291 -22 2491 74 6 0 chr4 37736612 37736950 -146551712 - THE1A LTR MaLR -15 340 1 216 280 0 0 chr4 37737863 37737913 -146550749 - L2 LINE L2 -4 3268 3219 2640 30 0 0 chr4 37738680 37738978 -146549684 + AluY SINE Alu 1 298 -13 643 334 31 26 chr4 37739815 37740165 -146548497 + MLT1I LTR MaLR 9 360 -49 3996 209 22 43 chr4 37740191 37742158 -146546504 - L1MB8 LINE L1 -37 6141 4217 1739 111 0 24 chr4 37742161 37742414 -146546248 + AluSq SINE Alu 35 281 -32 271 0 51 0 chr4 37742414 37742453 -146546209 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 318 367 86 0 chr4 37743454 37743645 -146545017 - MIR SINE MIR -21 241 35 188 234 21 0 chr4 37743923 37743970 -146544692 + L2 LINE L2 3265 3312 -1 325 313 21 0 chr4 37744103 37744199 -146544463 + MIR SINE MIR 56 153 -109 705 296 8 34 chr4 37744387 37744654 -146544008 + MIR SINE MIR 3 262 0 207 188 0 0 chr4 37744654 37744702 -146543960 + (CTA)n Simple_repeat Simple_repeat 2 49 0 363 44 0 0 chr4 37745005 37745050 -146543612 + (TG)n Simple_repeat Simple_repeat 1 45 0 281 288 42 17 chr4 37745873 37745991 -146542671 + LTR67 LTR ERVL 428 548 -9 2548 126 0 6 chr4 37746142 37746508 -146542154 - THE1B LTR MaLR 0 364 1 37 76 0 0 chr4 37747287 37747366 -146541296 + AT_rich Low_complexity Low_complexity 1 79 0 301 256 45 25 chr4 37748156 37748267 -146540395 + MIR SINE MIR 34 145 -63 21 57 0 0 chr4 37748824 37748859 -146539803 + AT_rich Low_complexity Low_complexity 1 35 0 410 273 55 36 chr4 37750611 37750721 -146537941 + MIR SINE MIR 25 136 -72 465 265 86 0 chr4 37750782 37750899 -146537763 - MIR SINE MIR -101 161 35 399 41 0 0 chr4 37751233 37751282 -146537380 + (TG)n Simple_repeat Simple_repeat 2 50 0 2313 98 0 0 chr4 37756449 37756745 -146531917 - AluSq SINE Alu -17 296 1 245 309 28 42 chr4 37756817 37756985 -146531677 - MIR SINE MIR -66 142 11 307 280 11 32 chr4 37757282 37757375 -146531287 - L3 LINE CR1 0 1577 1487 260 171 43 29 chr4 37757667 37757737 -146530925 - MER46C DNA MER2_type 0 338 268 821 162 96 0 chr4 37757833 37758000 -146530662 + MER3 DNA MER1_type 1 183 -26 264 247 0 130 chr4 37758033 37758179 -146530483 - MER46C DNA MER2_type -201 137 11 243 0 0 0 chr4 37758995 37759022 -146529640 + (CA)n Simple_repeat Simple_repeat 2 28 0 824 291 31 0 chr4 37759213 37759440 -146529222 + MIR SINE MIR 29 262 0 1956 150 5 57 chr4 37759565 37759828 -146528834 - MER7A DNA MER2_type -2692 346 108 2080 113 14 14 chr4 37759828 37760120 -146528542 + AluSx SINE Alu 1 292 -20 1956 150 5 57 chr4 37760120 37760223 -146528439 - MER7A DNA MER2_type -2930 108 1 430 268 8 49 chr4 37760673 37760796 -146527866 - L2 LINE L2 0 3313 3196 833 251 134 52 chr4 37761299 37761777 -146526885 - MLT1H1 LTR MaLR -2 553 37 320 145 10 0 chr4 37762578 37762642 -146526020 + MLT1H1 LTR MaLR 496 551 -4 1975 80 21 3 chr4 37762761 37763048 -146525614 + L1PA13 LINE L1 5869 6160 -3 537 228 150 43 chr4 37765719 37766162 -146522500 + MLT1G1 LTR MaLR 41 622 -2 483 288 126 10 chr4 37766208 37766406 -146522256 + MIR SINE MIR 37 257 -5 249 217 50 0 chr4 37767988 37768048 -146520614 + MIR SINE MIR 74 136 -126 202 176 0 0 chr4 37768236 37768270 -146520392 + L2 LINE L2 3272 3305 -8 399 279 89 28 chr4 37769040 37769219 -146519443 + MIR3 SINE MIR 14 203 -5 505 302 133 13 chr4 37769744 37769969 -146518693 + MIR SINE MIR 6 257 -5 251 309 0 0 chr4 37770373 37770441 -146518221 - L2 LINE L2 -13 3300 3233 984 275 38 50 chr4 37770468 37770865 -146517797 - L2 LINE L2 -68 3245 2854 942 134 37 0 chr4 37771155 37771319 -146517343 - L1M2 LINE L1 -739 5573 5404 688 275 60 16 chr4 37772240 37772491 -146516171 + MIR SINE MIR 1 262 0 2117 159 52 109 chr4 37774225 37774759 -146513903 - MLT1D LTR MaLR -1 504 1 432 286 78 68 chr4 37775024 37775423 -146513239 - MLT1K LTR MaLR -3 585 183 191 336 38 69 chr4 37775584 37775715 -146512947 + L2 LINE L2 3138 3264 -8 189 395 59 52 chr4 37777081 37777387 -146511275 + L2 LINE L2 2948 3255 -17 281 344 31 8 chr4 37777574 37777702 -146510960 - L2 LINE L2 -607 2707 2577 2160 212 125 31 chr4 37778218 37779045 -146509617 - L1ME2 LINE L1 -1 6163 5258 676 164 0 0 chr4 37779314 37779430 -146509232 + L1PA12 LINE L1 11 126 -7455 2947 263 68 55 chr4 37779437 37781715 -146506947 - L1M4 LINE L1 -825 6132 3825 381 248 35 0 chr4 37781711 37781824 -146506838 - L1M4 LINE L1 -3404 3553 3437 * 1359 233 139 43 chr4 37781852 37782102 -146506560 - L1M4 LINE L1 -4606 2353 2128 24804 33 15 48 chr4 37782102 37785980 -146502682 + L1PA4 LINE L1 2324 6155 0 1359 233 139 43 chr4 37785980 37786801 -146501861 - L1M4 LINE L1 -4831 2128 1206 268 296 61 0 chr4 37787326 37787424 -146501238 - HsTC2 DNA Tc2 -1794 104 1 2914 160 100 6 chr4 37788890 37789439 -146499223 - MER6A DNA MER2_type 0 605 5 703 294 126 15 chr4 37789445 37789904 -146498758 - LTR33 LTR ERVL 0 521 12 209 396 31 10 chr4 37790187 37790283 -146498379 - L2 LINE L2 -20 3252 3155 581 295 17 6 chr4 37790391 37790564 -146498098 - MIR SINE MIR -49 213 39 216 307 43 57 chr4 37791586 37791726 -146496936 + MIR SINE MIR 82 219 -43 * 245 266 151 45 chr4 37791723 37791922 -146496740 - MIR SINE MIR -37 225 6 1615 209 19 48 chr4 37792890 37793264 -146495398 - MLT1A1 LTR MaLR 0 365 3 21 36 0 0 chr4 37794281 37794309 -146494353 + AT_rich Low_complexity Low_complexity 1 28 0 510 300 85 14 chr4 37795413 37795636 -146493026 + MIR SINE MIR 20 258 -4 5816 126 8 8 chr4 37795702 37796639 -146492023 + L1P3 LINE L1 1 937 -4938 3388 91 21 2 chr4 37796639 37797113 -146491549 + L1PA8A LINE L1 5633 6115 -16 40 59 0 0 chr4 37797820 37797888 -146490774 + AT_rich Low_complexity Low_complexity 1 68 0 282 252 49 14 chr4 37798227 37798370 -146490292 - L1MC4 LINE L1 -1 8041 7894 645 254 14 28 chr4 37798486 37798699 -146489963 - L1ME2 LINE L1 -10 6154 5945 203 171 0 24 chr4 37799006 37799047 -146489615 - MIR SINE MIR -5 257 218 541 310 94 66 chr4 37799149 37799575 -146489087 - L2 LINE L2 -15 3257 2820 29 0 0 0 chr4 37800495 37800524 -146488138 + AT_rich Low_complexity Low_complexity 1 29 0 1545 211 54 20 chr4 37801054 37801405 -146487257 + MLT1A1 LTR MaLR 1 363 -2 1870 154 0 10 chr4 37801518 37801830 -146486832 - MER1B DNA MER1_type -30 309 1 239 355 112 42 chr4 37803604 37803624 -146485038 - L3 LINE CR1 -5 1572 1555 2529 131 51 24 chr4 37803624 37804075 -146484587 - MER4C LTR ERV1 -2 463 1 239 355 112 42 chr4 37804075 37804268 -146484394 - L3 LINE CR1 -22 1555 1344 2821 194 42 37 chr4 37804713 37805224 -146483438 - MER82 DNA MER2_type 0 653 137 2688 156 11 7 chr4 37805224 37805686 -146482976 + L1PB3 LINE L1 5690 6153 -1 2821 194 42 37 chr4 37805686 37805823 -146482839 - MER82 DNA MER2_type -516 137 2 1821 230 122 29 chr4 37805823 37805964 -146482698 - L1MC4 LINE L1 -13 8029 7902 1293 196 149 10 chr4 37805964 37806265 -146482397 + MER2 DNA MER2_type 1 343 -1 1821 230 122 29 chr4 37806265 37806772 -146481890 - L1MC4 LINE L1 -140 7902 7321 1560 242 58 42 chr4 37806777 37807327 -146481335 - MER90 LTR ERV1 -11 564 6 256 258 0 16 chr4 37807374 37807436 -146481226 + (TAGG)n Simple_repeat Simple_repeat 2 62 0 600 210 200 0 chr4 37807436 37807636 -146481026 + L1MC4 LINE L1 7093 7332 -710 379 329 79 64 chr4 37808789 37809117 -146479545 + L2 LINE L2 2854 3186 -86 701 266 75 55 chr4 37809873 37810589 -146478073 - L1MEd LINE L1 -4723 1587 813 5537 164 39 10 chr4 37810749 37812837 -146475825 - L1MA5 LINE L1 -70 6932 4790 1121 190 117 70 chr4 37812837 37813195 -146475467 - THE1C LTR MaLR 0 375 1 6535 138 41 6 chr4 37813195 37814310 -146474352 - THE1C-int LTR MaLR 0 1580 427 4917 197 58 30 chr4 37814339 37815577 -146473085 - L1MA5 LINE L1 -2153 4695 3413 2095 103 7 13 chr4 37815577 37815878 -146472784 + AluSc SINE Alu 1 299 -10 4917 197 58 30 chr4 37815878 37816019 -146472643 - L1MA5 LINE L1 -3435 3413 3277 * 5214 238 72 95 chr4 37815990 37818789 -146469873 - L1MA5 LINE L1 -4106 2743 11 413 329 52 73 chr4 37818794 37819219 -146469443 - L1MEd LINE L1 -5702 417 2 3683 242 116 45 chr4 37819342 37819469 -146469193 - L1M4c LINE L1 -1994 4650 4533 18244 33 4 0 chr4 37819469 37822449 -146466213 - L1PA3 LINE L1 0 6155 3168 3683 242 116 45 chr4 37822449 37822521 -146466141 - L1M4c LINE L1 -2111 4533 4468 1999 121 4 0 chr4 37822521 37822832 -146465830 - AluSg SINE Alu 0 312 1 3683 242 116 45 chr4 37822832 37825501 -146463161 - L1M4c LINE L1 -2176 4468 1461 757 254 83 28 chr4 37825493 37825829 -146462833 - L1M4c LINE L1 -5301 1241 874 * 373 281 73 89 chr4 37825891 37826137 -146462525 - L1M4c LINE L1 -5662 880 639 338 282 69 50 chr4 37826408 37826610 -146462052 - L1M4c LINE L1 -6320 222 17 2228 104 6 19 chr4 37826846 37827162 -146461500 - AluSq SINE Alu -1 312 1 208 280 70 40 chr4 37828000 37828100 -146460562 + MIR SINE MIR 25 127 -81 25 100 0 0 chr4 37828240 37828290 -146460372 + GC_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr4 37828716 37828739 -146459923 + AT_rich Low_complexity Low_complexity 1 23 0 818 225 25 6 chr4 37828743 37828943 -146459719 - MER33 DNA MER1_type -259 65 1 26 0 0 0 chr4 37829079 37829105 -146459557 + AT_rich Low_complexity Low_complexity 1 26 0 2071 84 11 21 chr4 37829135 37829420 -146459242 + AluSq SINE Alu 1 282 -31 3856 171 11 4 chr4 37829722 37830445 -146458217 - L1P3 LINE L1 -5147 728 1 255 240 103 49 chr4 37830539 37830686 -146457976 - MIR SINE MIR -38 224 71 1546 211 54 20 chr4 37831250 37831601 -146457061 + MLT1A1 LTR MaLR 1 363 -2 1870 154 0 10 chr4 37831714 37832026 -146456636 - MER1B DNA MER1_type -30 309 1 4600 204 21 57 chr4 37832706 37834246 -146454416 - L1PA14 LINE L1 -91 6064 4585 345 265 143 7 chr4 37834305 37834452 -146454210 + MLT1I LTR MaLR 5 171 -238 296 264 23 11 chr4 37834612 37834699 -146453963 + MLT1I LTR MaLR 322 409 0 246 227 106 0 chr4 37835588 37835654 -146453008 - MER117 DNA MER1_type -50 147 75 642 337 154 19 chr4 37836757 37837279 -146451383 - L2 LINE L2 -259 3054 2466 616 323 23 5 chr4 37837404 37837624 -146451038 + MIR SINE MIR 15 238 -24 2568 138 35 3 chr4 37837627 37838139 -146450523 + L1P4 LINE L1 5148 5669 -497 1554 115 5 0 chr4 37838255 37838503 -146450159 + AluSg/x SINE Alu 66 314 0 336 135 40 14 chr4 37838503 37838577 -146450085 + L1M4 LINE L1 3953 4028 -2118 * 15601 44 3 15 chr4 37838575 37840552 -146448110 + L1P LINE L1 3168 5120 -1026 680 275 60 16 chr4 37841806 37842057 -146446605 - MIR SINE MIR 0 262 1 252 0 0 0 chr4 37892753 37892781 -146395881 + (TG)n Simple_repeat Simple_repeat 2 29 0 * 351 0 0 0 chr4 37892780 37892819 -146395843 + (TA)n Simple_repeat Simple_repeat 1 39 0 276 100 0 0 chr4 37892853 37892893 -146395769 + (A)n Simple_repeat Simple_repeat 1 40 0 333 293 20 20 chr4 37893333 37893432 -146395230 - MER91B DNA MER1_type -2 188 90 321 289 79 0 chr4 37893465 37893579 -146395083 - MER91B DNA MER1_type -56 134 12 335 298 21 85 chr4 37893654 37893889 -146394773 + L1MEc LINE L1 1790 2009 -4387 432 188 127 30 chr4 37894023 37894220 -146394442 + Charlie5 DNA MER1_type 2362 2577 -35 424 334 98 54 chr4 37894232 37894306 -146394356 - L2 LINE L2 -850 2464 2395 2074 165 105 0 chr4 37894306 37894688 -146393974 - MSTB LTR MaLR -2 424 3 424 334 98 54 chr4 37894688 37894981 -146393681 - L2 LINE L2 -919 2395 2081 17492 103 20 2 chr4 37895495 37898324 -146390338 - L1P LINE L1 -2165 3981 1104 212 295 76 9 chr4 37898429 37898534 -146390128 + MIR SINE MIR 148 259 -3 234 340 53 40 chr4 37898552 37898702 -146389960 + L3 LINE CR1 1382 1533 -44 205 250 0 0 chr4 37899920 37899968 -146388694 + MIR SINE MIR 157 204 -58 4605 198 22 30 chr4 37900713 37901892 -146386770 + L1 LINE L1 3284 4453 -1693 542 167 56 21 chr4 37902018 37902162 -146386500 + L1MB8 LINE L1 2868 3016 -3130 4363 187 33 26 chr4 37902171 37903016 -146385646 + L1MB8 LINE L1 4267 5105 -1073 2240 100 7 3 chr4 37903016 37903316 -146385346 - AluSq SINE Alu -12 301 1 4363 187 33 26 chr4 37903316 37904421 -146384241 + L1MB8 LINE L1 5105 6178 0 633 261 85 28 chr4 37905872 37906048 -146382614 - MER5A DNA MER1_type 0 189 4 1352 152 38 60 chr4 37906053 37906189 -146382473 + AluJo SINE Alu 1 138 -174 312 27 0 0 chr4 37906189 37906226 -146382436 + (TAA)n Simple_repeat Simple_repeat 2 38 0 1352 152 38 60 chr4 37906226 37906404 -146382258 + AluJo SINE Alu 138 308 -4 216 0 0 0 chr4 37907706 37907730 -146380932 + (CCG)n Simple_repeat Simple_repeat 1 24 0 200 154 26 51 chr4 37909972 37910011 -146378651 - L2 LINE L2 -620 2694 2657 394 141 0 0 chr4 37910794 37910865 -146377797 + LOR1a LTR ERV1 238 308 -189 892 153 158 18 chr4 37910878 37911106 -146377556 + LOR1a LTR ERV1 238 497 0 440 305 98 66 chr4 37911179 37911484 -146377178 + L2 LINE L2 2935 3249 -23 565 283 0 13 chr4 37912261 37912413 -146376249 + MIR SINE MIR 113 262 0 302 323 8 62 chr4 37913124 37913254 -146375408 - MIR SINE MIR -80 182 60 25 0 0 0 chr4 37913445 37913470 -146375192 + AT_rich Low_complexity Low_complexity 1 25 0 341 305 68 0 chr4 37915175 37915293 -146373369 - MIR SINE MIR -109 153 28 226 271 112 0 chr4 37915344 37915451 -146373211 - L3 LINE CR1 -251 1326 1208 552 286 106 5 chr4 37915471 37915670 -146372992 + L2 LINE L2 2565 2783 -531 715 273 106 57 chr4 37915824 37916212 -146372450 + L2 LINE L2 2836 3242 -71 401 218 213 11 chr4 37918656 37918830 -146369832 - MER3 DNA MER1_type 0 209 1 7291 88 9 12 chr4 37919269 37920574 -146368088 + L1P3 LINE L1 741 2043 -4418 213 281 52 94 chr4 37921362 37921554 -146367108 + L2 LINE L2 2850 3033 -239 * 612 261 73 139 chr4 37921541 37921754 -146366908 + L2 LINE L2 2827 3052 -261 3692 59 8 0 chr4 37921754 37922232 -146366430 - L1PA7 LINE L1 0 6154 5673 310 71 0 0 chr4 37922232 37922274 -146366388 + L1P3 LINE L1 1370 1411 -5050 612 261 73 139 chr4 37922274 37922536 -146366126 + L2 LINE L2 3050 3310 -3 206 260 0 115 chr4 37922565 37922661 -146366001 + L2 LINE L2 3010 3094 -178 787 266 133 42 chr4 37922689 37923072 -146365590 - L2 LINE L2 0 3313 2896 365 153 0 0 chr4 37923072 37923131 -146365531 + Alu SINE Alu 235 293 -9 250 279 284 5 chr4 37923134 37923342 -146365320 - L2 LINE L2 -413 2901 2636 182 353 69 10 chr4 37924046 37924148 -146364514 + L2 LINE L2 2552 2659 -655 * 297 305 67 0 chr4 37924144 37924249 -146364413 + L2 LINE L2 3144 3255 -17 12904 145 30 25 chr4 37925084 37927317 -146361345 + L1M1 LINE L1 15 2258 -5307 180 315 208 0 chr4 37927910 37928040 -146360622 - L2 LINE L2 -558 2756 2600 685 275 0 25 chr4 37929248 37929408 -146359254 - MIR3 SINE MIR -21 187 32 1570 216 102 30 chr4 37929533 37930033 -146358629 - MLT1H LTR MaLR -1 548 13 424 302 60 28 chr4 37930056 37930238 -146358424 - MIR SINE MIR -61 201 14 547 209 9 0 chr4 37930746 37930851 -146357811 + MER5A DNA MER1_type 4 109 -80 241 188 267 40 chr4 37930777 37930878 -146357784 - MER5A DNA MER1_type -23 166 43 * 6322 92 26 6 chr4 37931001 37932652 -146356010 - L1PA10 LINE L1 0 6168 4495 4775 114 50 38 chr4 37932766 37934343 -146354319 + L1PA16 LINE L1 4564 6157 -9 2197 83 0 51 chr4 37934363 37934677 -146353985 + AluSg SINE Alu 1 298 -12 306 0 0 0 chr4 37935213 37935247 -146353415 + (CA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr4 37935998 37936019 -146352643 + AT_rich Low_complexity Low_complexity 1 21 0 1470 233 70 86 chr4 37937098 37938024 -146350638 + L1M4 LINE L1 2214 3124 -3022 292 232 18 98 chr4 37938103 37938215 -146350447 - MIR3 SINE MIR -8 200 98 315 361 71 13 chr4 37938272 37938427 -146350235 - MIR SINE MIR -79 183 20 187 303 90 34 chr4 37938921 37939010 -146349652 - L2 LINE L2 -11 3261 3168 805 184 87 4 chr4 37939792 37940011 -146348651 - L1PB4 LINE L1 -4 6152 5897 2276 107 7 0 chr4 37941583 37941893 -146346769 - AluSx SINE Alu 0 312 1 640 237 30 12 chr4 37943398 37943598 -146345064 - MIR SINE MIR 0 262 13 2256 165 41 10 chr4 37944347 37944760 -146343902 + MSTB LTR MaLR 1 426 0 537 294 42 71 chr4 37945694 37945895 -146342767 - MIR SINE MIR -31 231 37 2485 57 3 0 chr4 37945895 37946195 -146342467 - AluY SINE Alu -10 301 1 537 294 42 71 chr4 37946195 37946231 -146342431 - MIR SINE MIR -225 37 1 430 313 74 14 chr4 37946255 37946622 -146342040 - L1ME4a LINE L1 -251 5870 5482 223 241 124 69 chr4 37946953 37947098 -146341564 + MIR SINE MIR 103 255 -7 208 296 148 0 chr4 37947167 37947255 -146341407 + L2 LINE L2 3141 3241 -31 2357 78 10 7 chr4 37947778 37948073 -146340589 + AluSp SINE Alu 1 296 -17 37 99 0 0 chr4 37948095 37948216 -146340446 + AT_rich Low_complexity Low_complexity 1 121 0 710 116 41 7 chr4 37948220 37948367 -146340295 + L1MA7 LINE L1 6136 6287 -4 614 271 66 0 chr4 37949634 37949800 -146338862 - MIR SINE MIR -66 196 20 257 337 42 36 chr4 37949825 37950018 -146338644 - MIR SINE MIR -50 212 19 551 252 144 31 chr4 37950468 37950690 -146337972 - MIR SINE MIR 0 262 16 682 323 24 24 chr4 37950782 37951030 -146337632 + MIR SINE MIR 15 262 0 337 299 119 11 chr4 37951090 37951267 -146337395 - MIR SINE MIR -65 197 2 1868 150 0 10 chr4 37953099 37953424 -146335238 - AluJb SINE Alu 0 312 1 846 123 5 9 chr4 37954375 37954544 -146334118 - L1PA10 LINE L1 0 6172 6006 461 176 17 42 chr4 37955377 37955496 -146333166 + L1MA8 LINE L1 6176 6291 0 515 133 0 0 chr4 37956346 37956421 -146332241 - AluJ/FLAM SINE Alu -232 80 6 1723 142 16 13 chr4 37956570 37956873 -146331789 - AluSq SINE Alu -9 304 1 1966 101 4 0 chr4 37956895 37957153 -146331509 - AluSx SINE Alu -10 302 44 712 185 5 116 chr4 37957195 37957384 -146331278 + MIR SINE MIR 45 212 -50 2094 132 14 0 chr4 37957411 37957706 -146330956 - AluSx SINE Alu -13 299 1 440 64 9 55 chr4 37957836 37957945 -146330717 + (TA)n Simple_repeat Simple_repeat 2 105 0 627 170 66 33 chr4 37957946 37958128 -146330534 - L1MB4 LINE L1 -17 6163 5976 216 298 61 61 chr4 37958231 37958362 -146330300 - L2 LINE L2 -197 3116 2986 2069 109 3 33 chr4 37959006 37959310 -146329352 - AluSx SINE Alu -17 295 1 221 191 0 63 chr4 37959437 37959500 -146329162 + (TATATG)n Simple_repeat Simple_repeat 6 64 0 754 209 19 0 chr4 37959709 37959867 -146328795 - MER5B DNA MER1_type -17 161 1 445 308 53 8 chr4 37959870 37960003 -146328659 - MIR3 SINE MIR -6 202 64 239 284 49 0 chr4 37960893 37960974 -146327688 - MIR3 SINE MIR -13 195 111 2086 105 18 7 chr4 37961142 37961428 -146327234 + AluSx SINE Alu 1 289 -23 780 142 108 85 chr4 37961595 37961807 -146326855 - MER20 DNA MER1_type -2 217 1 2040 125 26 7 chr4 37964017 37964322 -146324340 - AluSx SINE Alu -1 311 1 722 63 0 0 chr4 37964732 37964827 -146323835 + AluSp/q SINE Alu 214 308 -5 289 53 0 0 chr4 37965121 37965159 -146323503 - L1P LINE L1 -1673 4473 4436 232 230 18 124 chr4 37965851 37965964 -146322698 - MIR SINE MIR -75 187 87 1266 91 157 19 chr4 37966396 37966606 -146322056 + AluSc SINE Alu 63 301 -8 524 271 69 21 chr4 37966609 37966797 -146321865 - MIR3 SINE MIR -4 204 8 205 345 23 11 chr4 37966845 37966932 -146321730 + MIR SINE MIR 2 89 -173 408 255 66 19 chr4 37967906 37968012 -146320650 + MIR SINE MIR 36 146 -116 197 237 51 17 chr4 37968015 37968074 -146320588 + MIR SINE MIR 105 165 -97 276 247 164 0 chr4 37968901 37968974 -146319688 - L2 LINE L2 -5 3267 3183 26 74 0 0 chr4 37969863 37969917 -146318745 + AT_rich Low_complexity Low_complexity 1 54 0 449 302 180 25 chr4 37970075 37970353 -146318309 - L2 LINE L2 -536 2778 2458 2191 123 0 0 chr4 37970438 37970730 -146317932 + AluSx SINE Alu 1 292 -20 640 299 5 33 chr4 37971128 37971312 -146317350 - MIR3 SINE MIR -14 194 16 1723 145 104 9 chr4 37972581 37972898 -146315764 + MER7A DNA MER2_type 1 345 -1 193 267 0 0 chr4 37974183 37974228 -146314434 - L2 LINE L2 -2 3311 3267 714 229 136 60 chr4 37974343 37974712 -146313950 - MER57A LTR ERV1 -3 400 1 251 250 0 44 chr4 37974761 37974829 -146313833 - L2 LINE L2 -20 3293 3229 190 337 58 0 chr4 37974985 37975071 -146313591 - L2 LINE L2 -213 3059 2969 272 279 143 7 chr4 37975114 37975261 -146313401 + MIR3 SINE MIR 33 199 -9 372 297 155 71 chr4 37975460 37975756 -146312906 + L2 LINE L2 1443 1713 -1601 192 40 0 0 chr4 37975756 37975781 -146312881 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 372 297 155 71 chr4 37975781 37976064 -146312598 + L2 LINE L2 1713 2071 -1243 23 0 0 0 chr4 37976512 37976535 -146312127 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr4 37976852 37976876 -146311786 + AT_rich Low_complexity Low_complexity 1 24 0 1781 159 85 37 chr4 37977314 37977692 -146310970 + MSTD LTR MaLR 1 396 0 296 273 45 0 chr4 37977888 37977954 -146310708 - MIR SINE MIR -3 259 191 250 239 53 97 chr4 37977964 37978077 -146310585 - MIR SINE MIR -88 120 13 262 217 26 17 chr4 37979195 37979310 -146309352 + (TTATA)n Simple_repeat Simple_repeat 3 118 0 432 225 178 94 chr4 37979797 37979988 -146308674 + MIR SINE MIR 1 207 -55 27 73 0 0 chr4 37980019 37980074 -146308588 + AT_rich Low_complexity Low_complexity 1 55 0 3391 164 30 34 chr4 37980104 37980842 -146307820 + L1MB8 LINE L1 5443 6177 -1 26 0 0 0 chr4 37981377 37981403 -146307259 + AT_rich Low_complexity Low_complexity 1 26 0 377 326 116 45 chr4 37982851 37983233 -146305429 - L2 LINE L2 -332 2981 2561 2322 132 62 94 chr4 37983394 37983473 -146305189 - LTR19A LTR ERV1 -1 485 405 2155 133 7 0 chr4 37983473 37983782 -146304880 + AluSx SINE Alu 1 311 -1 2322 132 62 94 chr4 37983782 37984203 -146304459 - LTR19A LTR ERV1 -81 405 1 516 188 21 0 chr4 37984249 37984345 -146304317 - MER103 DNA DNA -65 101 4 1865 100 4 26 chr4 37984485 37984756 -146303906 + AluSc SINE Alu 45 309 0 832 251 31 35 chr4 37984762 37985021 -146303641 - MLT1B LTR MaLR -90 300 43 2691 114 8 11 chr4 37985022 37985398 -146303264 + THE1C LTR MaLR 1 375 0 4707 126 65 15 chr4 37985398 37986142 -146302520 + THE1C-int LTR MaLR 1 781 -799 688 100 18 9 chr4 37986126 37986236 -146302426 + THE1C-int LTR MaLR 1470 1580 0 * 2846 102 8 8 chr4 37986236 37986609 -146302053 + THE1C LTR MaLR 1 373 -2 287 170 0 0 chr4 37986609 37986656 -146302006 - MLT1B LTR MaLR -342 48 2 2361 92 0 0 chr4 37988065 37988359 -146300303 + AluSq SINE Alu 1 294 -19 2104 127 9 12 chr4 37988583 37988914 -146299748 + MLT2D LTR ERVL 1 330 -84 270 81 0 0 chr4 37989103 37989140 -146299522 + (TC)n Simple_repeat Simple_repeat 1 37 0 497 274 61 6 chr4 37989375 37989539 -146299123 - MIR SINE MIR -3 259 87 2468 74 0 3 chr4 37989539 37989862 -146298800 + L1PA8 LINE L1 5767 6088 -84 255 311 27 0 chr4 37989863 37989937 -146298725 - MIR SINE MIR -173 89 14 712 240 56 22 chr4 37991082 37991261 -146297401 + MER5A DNA MER1_type 4 188 -1 267 176 0 0 chr4 37992202 37992253 -146296409 - MSTB2 LTR MaLR -406 51 1 1285 236 59 44 chr4 37993224 37993614 -146295048 + MSTD LTR MaLR 1 396 0 373 310 54 38 chr4 37993968 37994152 -146294510 + MIR3 SINE MIR 16 202 -6 577 220 50 14 chr4 37994445 37994586 -146294076 - L2 LINE L2 -9 3304 3159 219 346 28 37 chr4 37995418 37995525 -146293137 + MIR SINE MIR 5 110 -152 2747 135 24 7 chr4 37995929 37996350 -146292312 - MSTA LTR MaLR 0 428 1 648 0 0 0 chr4 37996733 37996805 -146291857 + (AATAG)n Simple_repeat Simple_repeat 4 75 0 346 250 14 0 chr4 37996855 37996927 -146291735 - MER5A DNA MER1_type -57 132 60 272 263 0 13 chr4 37996927 37997003 -146291659 - MER112 DNA MER1_type -178 82 8 264 208 28 14 chr4 37997489 37997561 -146291101 + L1MC5 LINE L1 7135 7207 -754 421 242 68 19 chr4 37997665 37997700 -146290962 + L1MC5 LINE L1 7268 7300 -661 4339 57 44 11 chr4 37997700 37997931 -146290731 + L1PA8 LINE L1 5593 5815 -357 2158 122 7 0 chr4 37997931 37998226 -146290436 + AluSp SINE Alu 5 301 -12 4339 57 44 11 chr4 37998226 37998542 -146290120 + L1PA8 LINE L1 5815 6158 -14 421 242 68 19 chr4 37998542 37998667 -146289995 + L1MC5 LINE L1 7300 7436 -525 716 179 107 7 chr4 37998690 37998830 -146289832 - MER5A DNA MER1_type -35 154 1 10749 117 25 4 chr4 37999050 38000631 -146288031 + L1P3 LINE L1 8 1621 -4840 509 140 0 70 chr4 38001025 38001102 -146287560 + MLT1A1 LTR MaLR 1 71 -294 2255 117 56 39 chr4 38001102 38001460 -146287202 - THE1B LTR MaLR 0 364 1 509 140 0 70 chr4 38001460 38001482 -146287180 + MLT1A1 LTR MaLR 71 93 -272 970 165 44 6 chr4 38001491 38001673 -146286989 + MSTA LTR MaLR 238 426 -2 * 1445 182 0 0 chr4 38001673 38001892 -146286770 + MLT1A1 LTR MaLR 145 363 -2 2362 137 42 16 chr4 38002183 38002569 -146286093 + MSTD LTR MaLR 1 396 0 249 248 71 105 chr4 38004187 38004397 -146284265 - L1MC4 LINE L1 -12 8030 7828 1564 148 86 148 chr4 38004453 38005035 -146283627 - L1ME2 LINE L1 -14 6150 5605 964 198 14 55 chr4 38005809 38006026 -146282636 - MER8 DNA MER2_type 0 239 32 1265 132 26 0 chr4 38006026 38006215 -146282447 + L1MB1 LINE L1 5974 6167 -1 214 289 12 36 chr4 38006610 38006693 -146281969 - L2 LINE L2 -2 3311 3231 495 261 106 6 chr4 38007096 38007257 -146281405 - MIR SINE MIR -45 217 41 638 239 139 79 chr4 38007973 38008504 -146280158 - HAL1 LINE L1 0 2507 1945 872 211 142 37 chr4 38008555 38008935 -146279727 - HAL1 LINE L1 -1079 1428 1009 1166 113 0 0 chr4 38008980 38009139 -146279523 - AluSg/x SINE Alu -10 302 144 1667 272 74 57 chr4 38009210 38009942 -146278720 - HAL1 LINE L1 -1636 871 128 305 296 0 56 chr4 38009971 38010079 -146278583 + L1MC4 LINE L1 6615 6716 -1326 251 315 14 0 chr4 38010081 38010154 -146278508 - HAL1 LINE L1 -2428 79 6 27 29 0 0 chr4 38010257 38010291 -146278371 + AT_rich Low_complexity Low_complexity 1 34 0 3208 108 14 20 chr4 38010585 38011076 -146277586 - L1MA2 LINE L1 -222 6082 5595 * 5927 132 26 45 chr4 38011073 38011884 -146276778 - L1PA13 LINE L1 0 6163 5339 7080 48 37 6 chr4 38011884 38012810 -146275852 + L1PA7 LINE L1 5202 6154 0 5927 132 26 45 chr4 38012810 38013870 -146274792 - L1PA13 LINE L1 -824 5339 4320 3515 131 6 20 chr4 38013870 38014414 -146274248 - L1PB1 LINE L1 0 6854 6319 14246 173 36 52 chr4 38014416 38016994 -146271668 - L1PB1 LINE L1 -593 6261 3759 2320 82 3 10 chr4 38016994 38017299 -146271363 - AluY SINE Alu -8 303 1 14246 173 36 52 chr4 38017299 38018281 -146270381 - L1PB1 LINE L1 -3095 3759 2762 2304 119 9 24 chr4 38018281 38018618 -146270044 + MER1B DNA MER1_type 1 332 -7 819 181 7 0 chr4 38018619 38018774 -146269888 - L1PB1 LINE L1 -4081 2768 2613 * 9533 195 63 5 chr4 38018767 38020514 -146268148 - L1PB1 LINE L1 -4935 1904 55 8524 217 43 21 chr4 38020585 38022365 -146266297 - L1M1 LINE L1 -697 7027 5287 2500 104 48 22 chr4 38022365 38022720 -146265942 - THE1B LTR MaLR 0 364 1 8524 217 43 21 chr4 38022720 38025155 -146263507 - L1M1 LINE L1 -2437 5287 2612 187 114 45 0 chr4 38028886 38028930 -146259732 + CT-rich Low_complexity Low_complexity 3 48 0 2389 89 3 0 chr4 38029586 38029889 -146258773 - AluSp SINE Alu -9 304 1 1967 101 0 0 chr4 38030611 38030868 -146257794 + AluSx SINE Alu 1 257 -55 298 59 44 29 chr4 38030870 38030938 -146257724 + (TA)n Simple_repeat Simple_repeat 2 70 0 272 192 0 0 chr4 38031062 38031114 -146257548 + AluSx SINE Alu 256 307 -1 23 33 0 0 chr4 38031223 38031253 -146257409 + AT_rich Low_complexity Low_complexity 1 30 0 2282 111 3 0 chr4 38031369 38031501 -146257161 + AluSx SINE Alu 1 131 -181 2271 67 0 0 chr4 38031501 38031771 -146256891 + AluY SINE Alu 38 307 -4 2282 111 3 0 chr4 38031771 38031945 -146256717 + AluSx SINE Alu 131 308 -4 2400 41 3 60 chr4 38033003 38033320 -146255342 + AluY SINE Alu 1 299 -12 2282 99 0 3 chr4 38033801 38034118 -146254544 + AluSq SINE Alu 1 313 0 1231 150 5 38 chr4 38034194 38034407 -146254255 - AluJb SINE Alu -21 291 86 201 237 0 0 chr4 38034409 38034447 -146254215 + MIR SINE MIR 108 145 -63 258 211 19 0 chr4 38035525 38035577 -146253085 - L2 LINE L2 -23 3249 3197 195 42 0 0 chr4 38035623 38035647 -146253015 + (GA)n Simple_repeat Simple_repeat 1 24 0 608 274 68 26 chr4 38035712 38035946 -146252716 + MIR SINE MIR 2 245 -17 465 226 107 60 chr4 38035964 38036132 -146252530 - MIR SINE MIR -17 245 70 264 30 0 0 chr4 38036203 38036236 -146252426 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2107 121 10 3 chr4 38036416 38036713 -146251949 + AluSx SINE Alu 1 299 -13 1987 139 0 7 chr4 38036737 38037031 -146251631 + AluSx SINE Alu 21 312 0 3480 75 18 9 chr4 38037129 38037569 -146251093 - MLT2A1 LTR ERVL 0 444 1 285 75 0 0 chr4 38038302 38038342 -146250320 + (TG)n Simple_repeat Simple_repeat 2 41 0 197 222 0 0 chr4 38038409 38038445 -146250217 - MER5A DNA MER1_type -102 87 52 2312 111 0 0 chr4 38038491 38038797 -146249865 + AluSq SINE Alu 1 306 -7 260 241 23 23 chr4 38038866 38038953 -146249709 + MIR SINE MIR 168 254 -8 2265 115 0 3 chr4 38038994 38039307 -146249355 - AluSq SINE Alu -1 312 1 999 204 53 22 chr4 38039670 38040107 -146248555 + MLT1A2 LTR MaLR 2 390 0 311 300 0 0 chr4 38040434 38040504 -146248158 - L2 LINE L2 -3 3269 3200 360 317 34 58 chr4 38040707 38040912 -146247750 + L2 LINE L2 2559 2758 -556 2989 218 52 8 chr4 38041023 38041642 -146247020 - MER82 DNA MER2_type -7 646 1 182 298 67 29 chr4 38041727 38041831 -146246831 + L2 LINE L2 2852 2959 -313 292 232 232 30 chr4 38043580 38043679 -146244983 - MER5A DNA MER1_type -3 186 68 191 86 0 29 chr4 38043681 38043716 -146244946 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 7898 16 1 0 chr4 38043716 38044811 -146243851 - L1PA3 LINE L1 -24 6131 5036 435 147 0 0 chr4 38044811 38044886 -146243776 - MER5A DNA MER1_type -114 75 1 1641 178 143 6 chr4 38045615 38045936 -146242726 + MLT1A1 LTR MaLR 1 365 0 2213 103 13 3 chr4 38046735 38047045 -146241617 + AluSq SINE Alu 1 313 0 260 268 14 14 chr4 38047151 38047222 -146241440 - L2 LINE L2 -2 3270 3200 242 298 89 70 chr4 38047760 38047918 -146240744 - MIR3 SINE MIR -30 178 18 329 328 187 11 chr4 38048015 38048277 -146240385 - L2 LINE L2 -21 3292 2985 319 346 87 16 chr4 38048420 38048605 -146240057 + L2 LINE L2 2850 3047 -225 2023 115 14 0 chr4 38048652 38048952 -146239710 + AluSx SINE Alu 1 304 0 2575 106 43 3 chr4 38048976 38049326 -146239336 - THE1B LTR MaLR 0 364 1 193 314 65 65 chr4 38049340 38049493 -146239169 + L2 LINE L2 3126 3278 -35 902 182 0 28 chr4 38049594 38049775 -146238887 + MER104 DNA MER2_type 5 180 0 205 246 70 0 chr4 38050825 38050882 -146237780 + MIR SINE MIR 98 158 -104 3919 79 21 2 chr4 38050882 38051363 -146237299 - LTR2B LTR ERV1 0 490 1 17509 129 11 8 chr4 38051363 38054007 -146234655 - Harlequin LTR ERV1 0 6896 4246 4691 67 30 0 chr4 38053992 38054587 -146234075 - Harlequin LTR ERV1 -2942 3954 3342 * 7191 56 16 17 chr4 38054577 38055581 -146233081 - Harlequin LTR ERV1 -4322 2574 1572 4803 66 34 6 chr4 38055566 38056190 -146232472 - Harlequin LTR ERV1 -5993 903 263 * 750 138 21 35 chr4 38056170 38056315 -146232347 - HERVE LTR ERV1 -7416 397 255 * 2460 103 44 16 chr4 38056286 38056674 -146231988 - HERVE LTR ERV1 -6497 399 1 3794 92 21 2 chr4 38056674 38057155 -146231507 - LTR2B LTR ERV1 0 490 1 184 320 82 0 chr4 38057155 38057252 -146231410 + MIR SINE MIR 155 259 -3 206 227 0 0 chr4 38057259 38057303 -146231359 + (CAT)n Simple_repeat Simple_repeat 3 46 0 725 286 127 40 chr4 38057755 38058133 -146230529 + HAL1 LINE L1 213 623 -1884 2094 129 10 3 chr4 38058188 38058499 -146230163 + AluSp SINE Alu 1 313 0 2780 235 92 43 chr4 38058683 38059496 -146229166 + HAL1 LINE L1 1044 1921 -586 2309 38 45 21 chr4 38059496 38059785 -146228877 - AluY SINE Alu -15 296 1 2780 235 92 43 chr4 38059785 38060016 -146228646 + HAL1 LINE L1 1921 2139 -368 290 190 10 70 chr4 38060115 38060215 -146228447 + HAL1 LINE L1 2281 2374 -133 228 237 43 108 chr4 38060374 38060467 -146228195 - L2 LINE L2 0 3272 3186 1075 185 39 19 chr4 38060601 38060806 -146227856 - MER3 DNA MER1_type 0 209 1 2521 157 26 47 chr4 38061108 38061574 -146227088 + LTR32 LTR ERVL 14 469 -2 399 244 34 42 chr4 38061574 38061693 -146226969 + MIR SINE MIR 14 131 -131 591 186 16 0 chr4 38063348 38063472 -146225190 + L1MA6 LINE L1 6101 6226 -74 2178 176 14 102 chr4 38063579 38063677 -146224985 - LTR32 LTR ERVL 0 471 366 2262 96 10 0 chr4 38063677 38063970 -146224692 - AluSx SINE Alu -16 296 1 2178 176 14 102 chr4 38063970 38064372 -146224290 - LTR32 LTR ERVL -105 366 15 204 40 0 0 chr4 38065252 38065277 -146223385 + (TG)n Simple_repeat Simple_repeat 1 25 0 339 213 0 0 chr4 38065285 38065365 -146223297 + (ATGGTG)n Simple_repeat Simple_repeat 2 81 0 347 326 89 42 chr4 38065374 38065564 -146223098 - MIR SINE MIR -18 244 46 953 184 18 0 chr4 38066545 38066708 -146221954 + MER58B DNA MER1_type 174 339 -2 1163 184 60 17 chr4 38066795 38067029 -146221633 + MLT1F1 LTR MaLR 322 565 -2 753 242 88 23 chr4 38067296 38067511 -146221151 - MIR SINE MIR -6 256 28 219 283 78 20 chr4 38067511 38067653 -146221009 + MIR SINE MIR 41 183 -58 859 210 6 6 chr4 38067945 38068102 -146220560 - FRAM SINE Alu -19 157 1 245 329 24 12 chr4 38068334 38068416 -146220246 + L2 LINE L2 3230 3312 -1 1912 208 19 8 chr4 38068456 38068817 -146219845 + MLT1A1 LTR MaLR 1 365 0 38 39 0 0 chr4 38070182 38070234 -146218428 + AT_rich Low_complexity Low_complexity 1 52 0 871 154 74 12 chr4 38070239 38070401 -146218261 - L1PB1 LINE L1 -8 6143 5972 3251 203 119 9 chr4 38070728 38071428 -146217234 + MER63C DNA MER1_type 2 813 -247 2577 59 0 0 chr4 38071428 38071733 -146216929 - AluY SINE Alu -6 305 1 3251 203 119 9 chr4 38071733 38071857 -146216805 + MER63C DNA MER1_type 813 922 -8 249 311 27 61 chr4 38072095 38072243 -146216419 + MIR SINE MIR 118 260 -2 2034 127 0 25 chr4 38072333 38072649 -146216013 - AluSx SINE Alu -4 308 1 2085 140 3 7 chr4 38072745 38073053 -146215609 - AluSx SINE Alu -5 307 1 336 233 75 42 chr4 38073404 38073524 -146215138 + MIR SINE MIR 124 247 -15 7161 142 37 7 chr4 38075305 38075501 -146213161 - Tigger3b DNA MER2_type -1814 1214 1025 2354 56 3 36 chr4 38075501 38075805 -146212857 - AluY SINE Alu -17 294 1 7161 142 37 7 chr4 38075805 38076786 -146211876 - Tigger3b DNA MER2_type -2003 1025 1 198 0 0 0 chr4 38078407 38078429 -146210233 + (TTCCC)n Simple_repeat Simple_repeat 4 25 0 1660 213 117 35 chr4 38078673 38079162 -146209500 + MLT1F LTR MaLR 14 542 0 1225 211 131 21 chr4 38079314 38079651 -146209011 + MLT1A2 LTR MaLR 1 374 0 7297 203 92 13 chr4 38079771 38081295 -146207367 + L1MA1 LINE L1 16 1659 -5906 10698 155 17 17 chr4 38081315 38082426 -146206236 + L1MA1 LINE L1 3724 4834 -2887 2382 100 0 0 chr4 38082426 38082736 -146205926 + AluY SINE Alu 1 310 -1 10698 155 17 17 chr4 38082736 38085719 -146202943 + L1MA1 LINE L1 4834 7721 0 381 95 0 0 chr4 38086023 38086086 -146202576 + (TA)n Simple_repeat Simple_repeat 1 63 0 2194 78 25 3 chr4 38086086 38086368 -146202294 - AluSq SINE Alu -25 288 1 228 297 10 20 chr4 38086734 38086835 -146201827 + Charlie7 DNA MER1_type 1 100 -2512 215 254 31 27 chr4 38086997 38087138 -146201524 - MER5A DNA MER1_type 0 189 4 202 158 0 26 chr4 38087766 38087804 -146200858 + (TATAG)n Simple_repeat Simple_repeat 2 38 0 709 271 6 11 chr4 38087816 38087997 -146200665 + MLT1G1 LTR MaLR 1 180 -415 * 1667 186 29 14 chr4 38087987 38088332 -146200330 - MLT1A1 LTR MaLR -15 350 1 710 268 208 52 chr4 38088332 38088698 -146199964 + MLT1G1 LTR MaLR 162 584 -11 603 174 19 3 chr4 38088973 38089115 -146199547 + MSTC LTR MaLR 1 147 -218 221 356 30 30 chr4 38089119 38089254 -146199408 - MIR SINE MIR -115 147 13 476 161 11 11 chr4 38089283 38089376 -146199286 + MSTD LTR MaLR 292 384 -12 210 298 58 29 chr4 38089560 38089664 -146198998 + L2 LINE L2 1842 1948 -1366 1480 207 29 31 chr4 38089665 38090051 -146198611 + MLT1B LTR MaLR 1 385 -5 188 336 92 25 chr4 38090094 38090213 -146198449 + MIR SINE MIR 21 147 -115 1352 148 4 13 chr4 38090221 38090451 -146198211 - AluSp SINE Alu 0 313 86 2554 65 0 0 chr4 38091410 38091717 -146196945 - AluY SINE Alu -4 307 1 281 307 11 11 chr4 38092076 38092164 -146196498 - L2 LINE L2 -1 3271 3184 1320 187 19 19 chr4 38092194 38092462 -146196200 + MLT1A1 LTR MaLR 3 270 -95 21 36 0 0 chr4 38093394 38093422 -146195240 + AT_rich Low_complexity Low_complexity 1 28 0 582 289 82 97 chr4 38094734 38095371 -146193291 + L2 LINE L2 2681 3307 -6 301 289 44 0 chr4 38095899 38095989 -146192673 - MIR SINE MIR -18 244 151 260 281 82 14 chr4 38097104 38097250 -146191412 + L1MEd LINE L1 919 1074 -5045 273 290 26 47 chr4 38097445 38097638 -146191024 + L1MEd LINE L1 1067 1255 -4864 27 73 0 0 chr4 38097720 38097775 -146190887 + AT_rich Low_complexity Low_complexity 1 55 0 3725 162 90 28 chr4 38097955 38098765 -146189897 - L1MA9 LINE L1 -51 6261 5402 413 288 50 18 chr4 38099744 38099963 -146188699 + L1ME4a LINE L1 5526 5751 -370 301 288 12 12 chr4 38099997 38100077 -146188585 + L1ME4a LINE L1 5840 5919 -202 2050 142 0 3 chr4 38100077 38100372 -146188290 + AluSx SINE Alu 1 294 -18 24 32 0 0 chr4 38100551 38100582 -146188080 + AT_rich Low_complexity Low_complexity 1 31 0 2215 117 0 0 chr4 38100661 38100952 -146187710 + AluSx SINE Alu 1 291 -21 237 355 36 30 chr4 38101019 38101185 -146187477 - MER5A DNA MER1_type 0 189 23 186 349 56 40 chr4 38102926 38103052 -146185610 - MER5A DNA MER1_type -29 160 33 189 184 0 0 chr4 38103280 38103318 -146185344 - L2 LINE L2 -3 3310 3273 773 123 0 0 chr4 38104462 38104584 -146184078 + L1MB5 LINE L1 6052 6173 -1 328 229 9 0 chr4 38105499 38105576 -146183086 + MER91B DNA MER1_type 1 81 -59 2211 180 119 17 chr4 38105917 38106389 -146182273 + MLT2B1 LTR ERVL 1 520 0 1004 160 10 0 chr4 38107175 38107381 -146181281 - L1P LINE L1 -1243 4903 4696 * 2062 69 20 33 chr4 38107376 38107682 -146180980 + L1P3 LINE L1 5364 5665 -489 588 229 64 6 chr4 38107699 38107856 -146180806 - L1MC3 LINE L1 -431 7354 7189 282 284 23 0 chr4 38107856 38107944 -146180718 - MLT1F1 LTR MaLR -443 124 35 3208 166 73 32 chr4 38107958 38108743 -146179919 - L1MC3 LINE L1 -685 7100 6284 431 287 70 60 chr4 38108825 38109139 -146179523 - L1ME4a LINE L1 -98 6023 5707 25 75 0 0 chr4 38109167 38109220 -146179442 + AT_rich Low_complexity Low_complexity 1 53 0 4706 88 16 22 chr4 38109220 38109915 -146178747 - L1PB1 LINE L1 -1 6150 5460 231 203 40 0 chr4 38109961 38110035 -146178627 + (TA)n Simple_repeat Simple_repeat 1 77 0 2408 77 0 0 chr4 38110615 38110913 -146177749 - AluY SINE Alu -13 298 1 301 287 106 0 chr4 38111002 38111096 -146177566 - MIR SINE MIR -65 197 94 536 251 37 59 chr4 38111365 38111552 -146177110 + MIR SINE MIR 80 262 0 260 217 12 24 chr4 38111985 38112068 -146176594 - L1MC5 LINE L1 -48 7913 7832 5474 77 4 4 chr4 38112202 38112978 -146175684 - L1PA7 LINE L1 0 6154 5379 1264 229 55 25 chr4 38113596 38113959 -146174703 + MLT1A2 LTR MaLR 1 374 0 187 276 58 35 chr4 38114547 38114634 -146174028 - L2 LINE L2 -900 2414 2326 767 114 0 0 chr4 38114634 38114739 -146173923 + AluY SINE Alu 130 234 -77 197 340 47 9 chr4 38114744 38114850 -146173812 - L2 LINE L2 -980 2334 2225 412 196 71 54 chr4 38114890 38115002 -146173660 - MER81 DNA DNA 0 114 1 2281 117 3 3 chr4 38115033 38115342 -146173320 - AluSc SINE Alu 0 309 1 325 294 54 29 chr4 38115548 38115824 -146172838 + L1ME LINE L1 5312 5594 -527 19204 97 6 1 chr4 38116134 38119025 -146169637 - L1P LINE L1 -790 5356 2451 5406 96 17 2 chr4 38119027 38119854 -146168808 - L1P LINE L1 -3514 2632 1794 2378 171 14 7 chr4 38121147 38121568 -146167094 - MSTB LTR MaLR -2 424 1 313 316 9 9 chr4 38121659 38121773 -146166889 + L2 LINE L2 2606 2719 -595 600 256 35 25 chr4 38121808 38122009 -146166653 - MIR SINE MIR -58 204 2 285 299 0 19 chr4 38122128 38122235 -146166427 + (CATATA)n Simple_repeat Simple_repeat 3 107 0 2235 151 3 3 chr4 38122235 38122600 -146166062 - MER47A DNA MER2_type -1 365 1 754 317 35 9 chr4 38122635 38122862 -146165800 + MIR SINE MIR 4 236 -26 603 320 60 41 chr4 38122909 38123228 -146165434 + L2 LINE L2 2946 3270 -2 187 322 64 64 chr4 38123226 38123428 -146165234 - L2 LINE L2 -182 3090 2889 * 1339 171 23 56 chr4 38123641 38123946 -146164716 + L1PB4 LINE L1 5862 6156 0 239 229 19 48 chr4 38125357 38125462 -146163200 - MER104 DNA Tc2 -78 102 1 2389 67 10 19 chr4 38126651 38126964 -146161698 - AluSq SINE Alu -3 310 1 26 0 0 0 chr4 38126994 38127020 -146161642 + AT_rich Low_complexity Low_complexity 1 26 0 804 230 25 6 chr4 38127156 38127356 -146161306 + MER33 DNA MER1_type 1 197 -97 23 0 0 0 chr4 38127360 38127383 -146161279 + AT_rich Low_complexity Low_complexity 1 23 0 280 169 28 14 chr4 38127574 38127645 -146161017 + MER33 DNA MER1_type 269 340 -23 1845 118 105 7 chr4 38127782 38128088 -146160574 - MER1B DNA MER1_type -1 336 1 348 133 0 0 chr4 38129369 38129429 -146159233 - L1M1 LINE L1 -4874 2691 2632 279 0 0 0 chr4 38129902 38129933 -146158729 + (A)n Simple_repeat Simple_repeat 1 31 0 526 298 45 15 chr4 38130125 38130323 -146158339 - MIR SINE MIR -13 249 46 2207 103 3 3 chr4 38130341 38130633 -146158029 - AluSx SINE Alu -20 292 1 2967 115 67 16 chr4 38130842 38131347 -146157315 - LTR26B LTR ERV1 0 531 1 405 248 117 14 chr4 38131489 38131634 -146157028 + MIR SINE MIR 103 262 0 2329 106 0 0 chr4 38131638 38131940 -146156722 + AluSx SINE Alu 3 304 -8 258 32 0 0 chr4 38132424 38132455 -146156207 + (TG)n Simple_repeat Simple_repeat 2 32 0 452 256 80 0 chr4 38132999 38133136 -146155526 - MIR SINE MIR -12 250 103 244 196 179 71 chr4 38133460 38133572 -146155090 - MLT1K LTR MaLR -19 569 446 1950 166 0 10 chr4 38133580 38133888 -146154774 + AluJb SINE Alu 1 305 -7 283 237 194 0 chr4 38134332 38134445 -146154217 - MIR SINE MIR -64 144 50 1510 192 7 14 chr4 38135455 38135741 -146152921 - AluJb SINE Alu 0 312 29 186 133 0 0 chr4 38136148 38136178 -146152484 + (CA)n Simple_repeat Simple_repeat 2 31 0 2112 208 40 99 chr4 38136235 38136409 -146152253 + L1MC4a LINE L1 6170 6353 -1455 1182 78 0 0 chr4 38136409 38136589 -146152073 + (CA)n Simple_repeat Simple_repeat 1 180 0 2112 208 40 99 chr4 38136589 38137121 -146151541 + L1MC4a LINE L1 6353 6834 -974 1944 154 7 0 chr4 38137128 38137414 -146151248 + AluSx SINE Alu 22 309 -3 807 187 42 6 chr4 38137424 38137720 -146150942 + GA-rich Low_complexity Low_complexity 1 306 0 249 108 0 0 chr4 38137747 38137784 -146150878 + (GGA)n Simple_repeat Simple_repeat 3 39 0 * 497 112 40 24 chr4 38137777 38137902 -146150760 + GA-rich Low_complexity Low_complexity 4 130 0 2096 251 65 15 chr4 38137983 38138026 -146150636 + L1MC4a LINE L1 7102 7141 -667 986 238 27 80 chr4 38138026 38138438 -146150224 + MLT1B LTR MaLR 1 390 0 2096 251 65 15 chr4 38138438 38139067 -146149595 + L1MC4a LINE L1 7141 7808 0 13545 124 47 48 chr4 38139075 38139215 -146149447 + Tigger1 DNA MER2_type 1 140 -2278 2165 119 0 31 chr4 38139215 38139535 -146149127 - AluSg SINE Alu 0 310 1 13545 124 47 48 chr4 38139535 38140294 -146148368 + Tigger1 DNA MER2_type 140 898 -1520 1964 141 53 0 chr4 38140294 38140578 -146148084 - AluSx SINE Alu -13 299 1 13545 124 47 48 chr4 38140578 38142097 -146146565 + Tigger1 DNA MER2_type 898 2418 0 2493 71 0 7 chr4 38143541 38143849 -146144813 + AluY SINE Alu 1 306 -5 231 61 0 0 chr4 38143970 38144003 -146144659 + (A)n Simple_repeat Simple_repeat 1 33 0 2268 110 0 3 chr4 38144003 38144303 -146144359 + AluSx SINE Alu 3 301 -11 195 204 0 0 chr4 38144573 38144617 -146144045 + (CA)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr4 38144911 38144932 -146143730 + AT_rich Low_complexity Low_complexity 1 21 0 204 216 0 0 chr4 38145093 38145130 -146143532 + (CATCC)n Simple_repeat Simple_repeat 3 39 0 451 139 23 0 chr4 38145196 38145282 -146143380 + MSTA LTR MaLR 160 247 -181 561 264 82 24 chr4 38147763 38147971 -146140691 - MIR SINE MIR 0 262 43 365 297 28 33 chr4 38148765 38148947 -146139715 + MER5A DNA MER1_type 1 181 -8 2229 110 0 0 chr4 38149148 38149449 -146139213 + AluSx SINE Alu 1 301 0 425 268 119 43 chr4 38149780 38149857 -146138805 - L1MC4a LINE L1 -341 5780 5710 1569 150 9 98 chr4 38149857 38150184 -146138478 - AluJo SINE Alu -13 299 2 425 268 119 43 chr4 38150184 38150488 -146138174 - L1MC4a LINE L1 -411 5710 5501 2230 90 4 0 chr4 38150515 38150822 -146137840 - AluSp SINE Alu 0 312 5 2318 90 0 0 chr4 38150838 38151128 -146137534 - AluSg SINE Alu -20 290 1 449 227 55 16 chr4 38151145 38151237 -146137425 - MER94 DNA DNA -1 133 33 1734 151 4 15 chr4 38151237 38151508 -146137154 - AluJo SINE Alu -34 278 11 449 227 55 16 chr4 38151508 38151543 -146137119 - MER94 DNA DNA -101 33 1 232 243 81 0 chr4 38151580 38151654 -146137008 - L1P5 LINE L1 -721 5435 5356 626 246 22 28 chr4 38152550 38152729 -146135933 - MIR SINE MIR -84 178 1 2291 108 0 16 chr4 38152822 38153138 -146135524 + AluY SINE Alu 1 311 0 342 272 10 29 chr4 38154335 38154438 -146134224 + L2 LINE L2 3189 3289 -24 2300 102 0 3 chr4 38154445 38154748 -146133914 - AluSg SINE Alu -8 302 1 233 279 90 18 chr4 38155092 38155203 -146133459 + MIR SINE MIR 58 176 -86 2503 53 0 31 chr4 38156053 38156374 -146132288 - AluY SINE Alu 0 311 1 253 285 118 14 chr4 38156650 38156789 -146131873 - MIR3 SINE MIR -45 163 13 1668 139 37 3 chr4 38156900 38157195 -146131467 + L1MA8 LINE L1 5026 5330 -816 298 97 83 56 chr4 38157187 38157259 -146131403 + L1MA8 LINE L1 5982 6055 -236 * 1283 130 40 0 chr4 38157323 38157546 -146131116 + L1MA8 LINE L1 6060 6291 0 5375 146 36 10 chr4 38157566 38157841 -146130821 + L1MA8 LINE L1 5321 5587 -704 2072 138 7 7 chr4 38157841 38158146 -146130516 + AluSx SINE Alu 1 305 -7 5375 146 36 10 chr4 38158146 38158810 -146129852 + L1MA8 LINE L1 5587 6285 -6 505 248 81 50 chr4 38159891 38160113 -146128549 + MIR SINE MIR 33 261 -1 353 301 71 16 chr4 38160960 38161143 -146127519 + MIR SINE MIR 70 262 0 420 302 123 0 chr4 38161514 38161726 -146126936 - MIR SINE MIR 0 262 25 2565 44 0 35 chr4 38162001 38162319 -146126343 - AluY SINE Alu -4 307 1 374 242 130 101 chr4 38162566 38162843 -146125819 + MER102b DNA MER1_type 56 340 -1 2022 150 6 10 chr4 38163439 38163752 -146124910 + AluJb SINE Alu 1 312 0 2136 133 7 0 chr4 38163812 38164114 -146124548 - AluSq SINE Alu -9 304 1 2390 106 0 0 chr4 38164771 38165083 -146123579 + AluSx SINE Alu 1 312 0 489 295 116 11 chr4 38165336 38165526 -146123136 - MIR SINE MIR 0 262 53 493 313 10 21 chr4 38165927 38166119 -146122543 + MLT1J1 LTR MaLR 4 193 -253 394 274 80 34 chr4 38166147 38166322 -146122340 + MLT1J2 LTR MaLR 268 450 0 1859 166 7 3 chr4 38166988 38167284 -146121378 + AluJo SINE Alu 1 297 -15 830 263 5 18 chr4 38167649 38167873 -146120789 - MIR SINE MIR -41 221 1 2552 64 0 0 chr4 38167958 38168256 -146120406 + AluY SINE Alu 1 298 -13 226 316 20 31 chr4 38168700 38168798 -146119864 - L2 LINE L2 -3 3269 3173 232 264 14 42 chr4 38169330 38169402 -146119260 + L2 LINE L2 3242 3311 -2 488 280 50 33 chr4 38169566 38169748 -146118914 - MIR SINE MIR -69 193 9 982 193 14 45 chr4 38169778 38170001 -146118661 + MER20 DNA MER1_type 1 216 -3 22 35 0 0 chr4 38170155 38170184 -146118478 + AT_rich Low_complexity Low_complexity 1 29 0 2442 92 0 0 chr4 38170747 38171053 -146117609 + AluY SINE Alu 1 306 -5 546 246 91 82 chr4 38171559 38171791 -146116871 - MER106B DNA MER1_type -2 1057 1 1456 209 75 3 chr4 38172149 38172470 -146116192 + MER2 DNA MER2_type 1 344 -1 264 271 0 0 chr4 38172875 38172934 -146115728 + (CA)n Simple_repeat Simple_repeat 2 60 0 549 311 38 4 chr4 38173458 38173693 -146114969 - MIR SINE MIR -4 258 16 1453 192 177 85 chr4 38174184 38174901 -146113761 + MER21B LTR ERV1 21 871 -60 326 236 36 64 chr4 38175963 38176071 -146112591 + MIR SINE MIR 64 170 -92 2175 92 18 11 chr4 38176071 38176404 -146112258 - AluSx SINE Alu 0 335 1 326 236 36 64 chr4 38176404 38176434 -146112228 + MIR SINE MIR 170 199 -63 400 275 17 0 chr4 38176529 38176649 -146112013 + MIR SINE MIR 5 126 -136 390 258 177 29 chr4 38177248 38177457 -146111205 + MIR SINE MIR 1 240 -22 918 203 84 4 chr4 38178032 38178259 -146110403 + L1MB3 LINE L1 5932 6176 -7 1903 158 17 0 chr4 38178371 38178669 -146109993 - AluJo SINE Alu -9 303 1 327 244 42 50 chr4 38178669 38178788 -146109874 - MIR SINE MIR -97 165 48 205 188 0 47 chr4 38180595 38180659 -146108003 + (TTAAA)n Simple_repeat Simple_repeat 3 63 0 642 229 63 58 chr4 38181541 38181746 -146106916 + MIR SINE MIR 1 206 -56 378 211 90 75 chr4 38181760 38181893 -146106769 - L2 LINE L2 -12 3301 3167 313 278 26 43 chr4 38181990 38182105 -146106557 - L2 LINE L2 -1 3271 3159 1620 137 7 50 chr4 38182443 38182721 -146105941 + AluSx SINE Alu 36 301 -11 555 157 0 0 chr4 38182819 38182902 -146105760 + AluS SINE Alu 2 84 -228 1054 137 43 0 chr4 38183199 38183360 -146105302 + LTR28 LTR ERV1 1 168 -852 * 1071 180 80 80 chr4 38183357 38183718 -146104944 + LTR27 LTR ERV1 276 636 0 292 219 49 12 chr4 38184561 38184643 -146104019 + MIR SINE MIR 69 153 -109 1769 116 51 18 chr4 38184682 38184957 -146103705 + MER4C LTR ERV1 8 291 -174 930 166 0 6 chr4 38185102 38185259 -146103403 + MER4C LTR ERV1 310 465 0 741 229 60 37 chr4 38185272 38185490 -146103172 + MLT1G1 LTR MaLR 75 297 -298 667 199 41 34 chr4 38185549 38185695 -146102967 + MLT1G1 LTR MaLR 447 593 -2 272 258 30 15 chr4 38185696 38185762 -146102900 + MIR SINE MIR 158 224 -38 1221 163 0 28 chr4 38185805 38186020 -146102642 - MER3 DNA MER1_type 0 209 1 261 225 188 59 chr4 38186294 38186650 -146102012 + L1ME4a LINE L1 5707 6108 -13 191 250 50 117 chr4 38186799 38186919 -146101743 - L2 LINE L2 -828 2486 2375 1870 149 203 20 chr4 38186924 38187319 -146101343 + MLT1C LTR MaLR 1 467 0 191 312 0 13 chr4 38187469 38187546 -146101116 - L2 LINE L2 -1300 2014 1939 3226 157 48 21 chr4 38187546 38188151 -146100511 + L1MB1 LINE L1 5543 6163 -5 1510 205 16 93 chr4 38188187 38188616 -146100046 + MSTD LTR MaLR 1 396 0 203 161 48 32 chr4 38188811 38188873 -146099789 + A-rich Low_complexity Low_complexity 1 63 0 182 261 218 74 chr4 38188879 38189163 -146099499 - L2 LINE L2 -1406 1908 1584 973 180 126 75 chr4 38189299 38189564 -146099098 + AluJb SINE Alu 1 282 -20 183 80 0 0 chr4 38189564 38189589 -146099073 + (CA)n Simple_repeat Simple_repeat 1 25 0 973 180 126 75 chr4 38189589 38189601 -146099061 + AluJb SINE Alu 282 292 -10 455 205 0 0 chr4 38189627 38189705 -146098957 + FLAM_A SINE Alu 21 98 -44 701 215 43 54 chr4 38190100 38190286 -146098376 - MIR SINE MIR -72 190 7 495 250 9 0 chr4 38191230 38191342 -146097320 + MIR3 SINE MIR 62 174 -34 207 0 0 0 chr4 38191720 38191743 -146096919 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 414 210 0 0 chr4 38191853 38191934 -146096728 + MIR SINE MIR 62 142 -66 317 188 30 143 chr4 38192054 38192187 -146096475 + MER46C DNA MER2_type 12 129 -209 2449 65 0 0 chr4 38192393 38192700 -146095962 + AluY SINE Alu 1 307 -4 1844 134 11 3 chr4 38192911 38193223 -146095439 - AluSx SINE Alu 0 314 1 433 305 115 5 chr4 38195190 38195390 -146093272 - MIR SINE MIR -33 229 8 1993 86 45 38 chr4 38195739 38196031 -146092631 + AluSc SINE Alu 1 294 -15 200 348 0 0 chr4 38196644 38196713 -146091949 + L2 LINE L2 3242 3310 -3 431 244 59 37 chr4 38198025 38198160 -146090502 + MIR SINE MIR 74 211 -51 198 336 44 35 chr4 38198189 38198302 -146090360 - L2 LINE L2 -72 3200 3087 984 233 35 19 chr4 38198879 38199137 -146089525 - MIR SINE MIR 0 262 1 6664 64 5 29 chr4 38199845 38201696 -146086966 + SVA Other Other 17 1385 -1 192 77 0 0 chr4 38201699 38201725 -146086937 + (A)n Simple_repeat Simple_repeat 1 26 0 2088 97 0 41 chr4 38202195 38202514 -146086148 - AluSc SINE Alu -3 306 1 775 207 63 40 chr4 38202668 38202890 -146085772 - MER21B LTR ERV1 -111 752 526 4079 129 16 10 chr4 38202892 38203514 -146085148 + MER41B LTR ERV1 1 626 -9 1354 229 45 64 chr4 38203470 38204072 -146084590 - MER21B LTR ERV1 -295 568 13 * 2043 134 0 6 chr4 38204818 38205132 -146083530 - AluJo SINE Alu 0 312 1 189 213 0 49 chr4 38205584 38205645 -146083017 + L2 LINE L2 2915 2972 -300 234 250 24 71 chr4 38207045 38207129 -146081533 + MIR SINE MIR 110 189 -73 589 169 61 40 chr4 38207467 38207615 -146081047 + MER5A DNA MER1_type 39 189 0 369 290 87 22 chr4 38207844 38207982 -146080680 + L2 LINE L2 3167 3313 0 342 277 62 18 chr4 38208483 38208595 -146080067 - L2 LINE L2 -1 3271 3155 335 270 50 20 chr4 38208637 38208737 -146079925 + MIR3 SINE MIR 97 199 -9 274 265 39 49 chr4 38208948 38209050 -146079612 + MIR3 SINE MIR 101 201 -7 2667 114 28 37 chr4 38209291 38209329 -146079333 - MSTA LTR MaLR -3 425 388 1973 110 0 23 chr4 38209329 38209628 -146079034 + AluSx SINE Alu 1 292 -20 2667 114 28 37 chr4 38209628 38210018 -146078644 - MSTA LTR MaLR -40 388 1 316 212 144 61 chr4 38210329 38210461 -146078201 - MIR SINE MIR 0 262 120 741 254 125 39 chr4 38211121 38211313 -146077349 - MER46C DNA MER2_type 0 338 107 2134 98 10 0 chr4 38211313 38211609 -146077053 + AluSx SINE Alu 1 299 -13 741 254 125 39 chr4 38211609 38211727 -146076935 - MER46C DNA MER2_type -231 107 1 429 153 0 0 chr4 38212040 38212112 -146076550 - AluS SINE Alu -240 73 2 2054 102 10 16 chr4 38212165 38212468 -146076194 + AluSc SINE Alu 1 301 -8 14049 153 28 78 chr4 38212592 38214905 -146073757 + L1M1 LINE L1 3 2156 -5409 9935 64 44 5 chr4 38214905 38216235 -146072427 + SVA Other Other 1 1381 -5 14049 153 28 78 chr4 38216235 38216691 -146071971 + L1M1 LINE L1 2156 2633 -4932 1354 99 5 0 chr4 38216812 38217003 -146071659 + AluSp SINE Alu 120 311 -2 252 0 0 0 chr4 38217003 38217031 -146071631 + (TA)n Simple_repeat Simple_repeat 2 29 0 459 273 8 23 chr4 38217343 38217475 -146071187 + MER5A DNA MER1_type 54 183 -6 488 159 9 37 chr4 38217503 38217610 -146071052 - MIR SINE MIR -112 150 47 214 235 0 0 chr4 38218254 38218305 -146070357 - L2 LINE L2 0 3313 3263 779 242 81 122 chr4 38220008 38220541 -146068121 + MLT1J LTR MaLR 1 511 0 547 243 218 5 chr4 38220905 38221111 -146067551 - MIR SINE MIR -6 256 7 809 158 8 15 chr4 38221372 38221505 -146067157 - FLAM_C SINE Alu 0 133 2 2333 73 0 7 chr4 38221512 38221814 -146066848 - AluSg SINE Alu -10 300 1 1998 112 7 0 chr4 38223819 38224104 -146064558 + AluSx SINE Alu 11 297 -15 304 275 151 63 chr4 38224119 38224403 -146064259 + L1MB5 LINE L1 5634 5942 -232 * 402 262 205 15 chr4 38224172 38224435 -146064227 + L1ME4a LINE L1 5688 6000 -121 195 292 77 0 chr4 38225134 38225199 -146063463 - MIR SINE MIR -88 174 105 2156 114 0 0 chr4 38225746 38226054 -146062608 - AluSx SINE Alu -4 308 1 1459 194 72 118 chr4 38226340 38226802 -146061860 + MLT1D LTR MaLR 1 439 -66 2086 109 0 0 chr4 38226802 38227113 -146061549 - AluSx SINE Alu 0 311 1 1459 194 72 118 chr4 38227113 38227176 -146061486 + MLT1D LTR MaLR 439 503 -2 343 239 0 0 chr4 38227329 38227396 -146061266 + L2 LINE L2 3204 3270 -2 303 305 38 0 chr4 38227545 38227650 -146061012 + MIR SINE MIR 111 219 -43 433 193 24 12 chr4 38228132 38228298 -146060364 + CT-rich Low_complexity Low_complexity 5 172 0 256 267 27 0 chr4 38228594 38228669 -146059993 + GA-rich Low_complexity Low_complexity 6 82 0 2045 44 0 4 chr4 38229773 38230025 -146058637 + AluY SINE Alu 60 310 -1 3097 192 112 39 chr4 38230247 38231090 -146057572 + L1MC4 LINE L1 6915 7818 -224 * 19012 140 28 17 chr4 38231087 38234376 -146054286 + L1MA3 LINE L1 10 3262 -4462 2117 105 27 10 chr4 38234376 38234671 -146053991 - AluSx SINE Alu -12 300 1 19012 140 28 17 chr4 38234671 38238988 -146049674 + L1MA3 LINE L1 3262 7724 0 23 33 0 0 chr4 38238988 38239018 -146049644 + AT_rich Low_complexity Low_complexity 1 30 0 421 276 129 43 chr4 38239163 38239245 -146049417 + L1ME LINE L1 5382 5456 -665 2333 108 0 0 chr4 38239245 38239542 -146049120 - AluSg SINE Alu -11 299 3 421 276 129 43 chr4 38239542 38239738 -146048924 + L1ME LINE L1 5456 5684 -437 301 299 186 5 chr4 38239993 38240187 -146048475 + MIR SINE MIR 2 230 -32 265 239 91 0 chr4 38240375 38240463 -146048199 + L1MC4 LINE L1 7933 8028 -14 1065 185 12 33 chr4 38240493 38240534 -146048128 + L1MC4 LINE L1 7804 7844 -198 1687 164 74 3 chr4 38240534 38240870 -146047792 + MER46B DNA MER2_type 2 236 0 1065 185 12 33 chr4 38240870 38241071 -146047591 + L1MC4 LINE L1 7844 8041 -1 2848 13 0 13 chr4 38241087 38241402 -146047260 + AluYa5 SINE Alu 1 311 0 2248 108 3 25 chr4 38241521 38241653 -146047009 + AluSx SINE Alu 1 134 -178 2256 65 0 0 chr4 38241653 38241915 -146046747 + AluY SINE Alu 38 299 -12 2248 108 3 25 chr4 38241915 38242097 -146046565 + AluSx SINE Alu 134 308 -4 2441 44 0 60 chr4 38243155 38243473 -146045189 + AluY SINE Alu 1 299 -12 2521 84 0 3 chr4 38243954 38244263 -146044399 + AluSq SINE Alu 1 308 -5 546 246 91 82 chr4 38244769 38245001 -146043661 - MER106B DNA MER1_type -2 1057 1 1456 209 75 3 chr4 38245359 38245680 -146042982 + MER2 DNA MER2_type 1 344 -1 264 271 0 0 chr4 38246085 38246144 -146042518 + (CA)n Simple_repeat Simple_repeat 2 60 0 549 311 38 4 chr4 38246668 38246903 -146041759 - MIR SINE MIR -4 258 16 1453 192 177 85 chr4 38247394 38248111 -146040551 + MER21B LTR ERV1 21 871 -60 326 236 36 64 chr4 38249173 38249281 -146039381 + MIR SINE MIR 64 170 -92 2175 92 18 11 chr4 38249281 38249614 -146039048 - AluSx SINE Alu 0 335 1 326 236 36 64 chr4 38249614 38249644 -146039018 + MIR SINE MIR 170 199 -63 400 275 17 0 chr4 38249739 38249859 -146038803 + MIR SINE MIR 5 126 -136 390 258 177 29 chr4 38250458 38250667 -146037995 + MIR SINE MIR 1 240 -22 918 203 84 4 chr4 38251242 38251469 -146037193 + L1MB3 LINE L1 5932 6176 -7 1903 158 17 0 chr4 38251581 38251879 -146036783 - AluJo SINE Alu -9 303 1 327 244 42 50 chr4 38251879 38251998 -146036664 - MIR SINE MIR -97 165 48 205 188 0 47 chr4 38253805 38253869 -146034793 + (TTAAA)n Simple_repeat Simple_repeat 3 63 0 642 229 63 58 chr4 38254751 38254956 -146033706 + MIR SINE MIR 1 206 -56 378 211 90 75 chr4 38254970 38255103 -146033559 - L2 LINE L2 -12 3301 3167 313 278 26 43 chr4 38255200 38255315 -146033347 - L2 LINE L2 -1 3271 3159 1620 137 7 50 chr4 38255653 38255931 -146032731 + AluSx SINE Alu 36 301 -11 555 157 0 0 chr4 38256029 38256112 -146032550 + AluS SINE Alu 2 84 -228 1043 137 43 0 chr4 38256409 38256570 -146032092 + LTR28 LTR ERV1 1 168 -852 1042 188 80 80 chr4 38256567 38256928 -146031734 + LTR27 LTR ERV1 276 636 0 * 257 219 49 12 chr4 38257771 38257853 -146030809 + MIR SINE MIR 69 153 -109 1771 116 51 18 chr4 38257892 38258167 -146030495 + MER4C LTR ERV1 8 291 -174 936 166 0 6 chr4 38258312 38258469 -146030193 + MER4C LTR ERV1 310 465 0 732 229 60 37 chr4 38258482 38258700 -146029962 + MLT1G1 LTR MaLR 75 297 -298 666 199 41 34 chr4 38258759 38258905 -146029757 + MLT1G1 LTR MaLR 447 593 -2 243 258 30 15 chr4 38258906 38258972 -146029690 + MIR SINE MIR 158 224 -38 1227 163 0 28 chr4 38259015 38259230 -146029432 - MER3 DNA MER1_type 0 209 1 296 225 188 59 chr4 38259504 38259860 -146028802 + L1ME4a LINE L1 5707 6108 -13 25 0 0 0 chr4 38260095 38260120 -146028542 + AT_rich Low_complexity Low_complexity 1 25 0 1864 149 203 20 chr4 38260134 38260529 -146028133 + MLT1C LTR MaLR 1 467 0 3249 157 48 21 chr4 38260756 38261361 -146027301 + L1MB1 LINE L1 5543 6163 -5 1514 205 16 93 chr4 38261397 38261826 -146026836 + MSTD LTR MaLR 1 396 0 203 161 48 32 chr4 38262021 38262083 -146026579 + A-rich Low_complexity Low_complexity 1 63 0 7409 87 51 2 chr4 38262635 38263794 -146024868 - L1P2 LINE L1 -722 5432 4233 244 304 0 22 chr4 38267669 38267761 -146020901 + L2 LINE L2 3183 3272 0 292 330 65 10 chr4 38267992 38268222 -146020440 - MIR3 SINE MIR -14 248 5 883 89 0 0 chr4 38271508 38271620 -146017042 + LTR8 LTR ERV1 580 691 0 1382 143 44 177 chr4 38271620 38272026 -146016636 + MSTB LTR MaLR 75 426 0 796 192 5 96 chr4 38272198 38272329 -146016333 - MER5A DNA MER1_type 0 189 82 1786 169 36 0 chr4 38272329 38272630 -146016032 - AluSx SINE Alu 0 312 1 796 192 5 96 chr4 38272630 38272706 -146015956 - MER5A DNA MER1_type -107 82 1 371 204 56 19 chr4 38272782 38272890 -146015772 - MER34 LTR ERV1 -3 539 428 2052 116 0 27 chr4 38273414 38273707 -146014955 - AluSg1 SINE Alu -20 289 5 4015 80 25 4 chr4 38273818 38274343 -146014319 + LTR17 LTR ERV1 1 536 -244 1327 148 17 25 chr4 38274445 38274681 -146013981 + L1PA16 LINE L1 5933 6166 0 1761 152 0 62 chr4 38274708 38275030 -146013632 - AluJo SINE Alu -10 302 1 299 311 25 19 chr4 38275033 38275194 -146013468 + LTR23 LTR ERV1 276 437 0 338 289 67 0 chr4 38275221 38275325 -146013337 - MER34B LTR ERV1 -3 562 452 1856 134 10 3 chr4 38275326 38275616 -146013046 + MER50 LTR ERV1 2 293 -441 2162 101 0 17 chr4 38276008 38276304 -146012358 + AluSx SINE Alu 14 304 -8 184 250 0 36 chr4 38276780 38276836 -146011826 - MIR SINE MIR -97 165 112 2442 101 0 0 chr4 38276869 38277177 -146011485 - AluSg SINE Alu -2 308 1 253 348 32 37 chr4 38277315 38277502 -146011160 + MIR SINE MIR 6 191 -71 254 116 93 0 chr4 38278673 38278716 -146009946 + MLT2F LTR ERVL 617 663 0 252 231 104 127 chr4 38278717 38278825 -146009837 + MIR SINE MIR 78 187 -75 2130 128 0 3 chr4 38278825 38279137 -146009525 + AluSx SINE Alu 1 311 -1 252 231 104 127 chr4 38279137 38279150 -146009512 + MIR SINE MIR 187 199 -63 2634 39 16 0 chr4 38279150 38279455 -146009207 + AluY SINE Alu 1 310 -1 252 231 104 127 chr4 38279455 38279505 -146009157 + MIR SINE MIR 199 246 -16 2181 134 0 0 chr4 38280021 38280327 -146008335 + AluSx SINE Alu 1 306 -6 255 181 14 42 chr4 38281756 38281828 -146006834 + (CCCCG)n Simple_repeat Simple_repeat 1 70 0 885 238 60 0 chr4 38283440 38283608 -146005054 - MER45A DNA AcHobo 0 178 1 2564 61 0 3 chr4 38283745 38284056 -146004606 + AluY SINE Alu 1 310 -1 211 248 277 10 chr4 38284133 38284234 -146004428 - MIR3 SINE MIR -37 171 44 193 244 12 12 chr4 38284337 38284419 -146004243 + GA-rich Low_complexity Low_complexity 3 84 0 206 341 123 35 chr4 38284748 38284918 -146003744 - MIR SINE MIR -62 200 16 2604 50 0 0 chr4 38285643 38285944 -146002718 + AluY SINE Alu 1 301 -10 261 294 178 27 chr4 38285950 38286096 -146002566 + MIR3 SINE MIR 28 195 -13 1175 168 57 10 chr4 38286144 38286353 -146002309 - MER20 DNA MER1_type 0 219 1 206 347 11 32 chr4 38286355 38286450 -146002212 - L2 LINE L2 -177 3095 3003 830 148 23 0 chr4 38286756 38286884 -146001778 + FLAM_C SINE Alu 2 132 -1 1941 124 0 4 chr4 38287672 38287945 -146000717 + AluJb SINE Alu 40 311 -1 1996 203 20 18 chr4 38288303 38288698 -145999964 + MSTD LTR MaLR 1 396 0 234 191 21 0 chr4 38288754 38288801 -145999861 + MER91A DNA MER1_type 2 49 -147 922 134 45 40 chr4 38290164 38290299 -145998363 - Charlie5 DNA MER1_type -11 2574 2436 2537 127 3 25 chr4 38290299 38290662 -145998000 - THE1A LTR MaLR 0 355 1 922 134 45 40 chr4 38290662 38290727 -145997935 - Charlie5 DNA MER1_type -149 2436 2373 416 67 17 0 chr4 38291264 38291324 -145997338 + (TC)n Simple_repeat Simple_repeat 2 62 0 799 200 13 7 chr4 38291475 38291625 -145997037 + Charlie4 DNA MER1_type 17 167 -1794 970 172 0 70 chr4 38291641 38291827 -145996835 - AluJo SINE Alu -139 173 1 625 144 9 9 chr4 38291832 38291943 -145996719 + Charlie4 DNA MER1_type 1823 1933 -28 387 60 0 0 chr4 38291947 38291997 -145996665 + (CA)n Simple_repeat Simple_repeat 1 50 0 207 0 0 0 chr4 38292316 38292339 -145996323 + (TC)n Simple_repeat Simple_repeat 1 23 0 897 285 62 27 chr4 38292365 38292786 -145995876 + LTR16A LTR ERVL 1 444 -6 1807 153 31 11 chr4 38292977 38293264 -145995398 - AluSx SINE Alu -19 293 1 2130 94 7 7 chr4 38293508 38293796 -145994866 + AluSg SINE Alu 1 288 -22 1130 202 158 97 chr4 38294022 38294299 -145994363 + MLT1D LTR MaLR 2 321 -184 2478 67 0 6 chr4 38294299 38294612 -145994050 + AluY SINE Alu 1 311 0 1130 202 158 97 chr4 38294612 38294809 -145993853 + MLT1D LTR MaLR 321 505 0 215 360 0 13 chr4 38295240 38295315 -145993347 + L2 LINE L2 3185 3258 -14 222 118 0 0 chr4 38295318 38295352 -145993310 + (T)n Simple_repeat Simple_repeat 1 34 0 696 132 47 0 chr4 38295354 38295460 -145993202 - HY1 scRNA scRNA -1 111 1 2302 97 3 7 chr4 38297045 38297354 -145991308 - AluSq SINE Alu -5 308 1 401 218 11 0 chr4 38297618 38297705 -145990957 - L1ME4a LINE L1 -235 5886 5799 1074 178 29 29 chr4 38297933 38298141 -145990521 + MER3 DNA MER1_type 1 208 -1 1815 148 11 4 chr4 38298166 38298444 -145990218 + AluJb SINE Alu 1 280 -32 30 0 0 0 chr4 38298569 38298599 -145990063 + AT_rich Low_complexity Low_complexity 1 30 0 270 277 128 11 chr4 38299347 38299441 -145989221 + L2 LINE L2 3168 3272 0 245 282 56 61 chr4 38299505 38299617 -145989045 - MIR SINE MIR -62 146 56 2196 131 0 13 chr4 38299617 38299930 -145988732 - AluSx SINE Alu -3 309 1 245 282 56 61 chr4 38299930 38299968 -145988694 - MIR SINE MIR -152 56 19 1070 190 24 6 chr4 38300047 38300365 -145988297 - MLT1C-int LTR MaLR -924 447 2 2148 127 10 3 chr4 38300368 38300676 -145987986 - AluSq SINE Alu -3 310 1 2080 204 76 7 chr4 38300684 38301120 -145987542 - MLT1C LTR MaLR -1 466 1 465 269 19 19 chr4 38301163 38301319 -145987343 - L1ME3A LINE L1 -78 6092 5937 * 3011 136 54 17 chr4 38301298 38301820 -145986842 - L1MB7 LINE L1 -5 6179 5639 821 144 0 0 chr4 38302483 38302601 -145986061 - FLAM_C SINE Alu -25 118 1 611 246 79 12 chr4 38302716 38302956 -145985706 - L1ME3A LINE L1 -219 5951 5696 841 131 86 157 chr4 38302958 38303322 -145985340 + LTR32 LTR ERVL 15 466 -5 354 183 0 0 chr4 38303333 38303404 -145985258 + (CATATA)n Simple_repeat Simple_repeat 4 74 0 301 266 0 43 chr4 38303407 38303501 -145985161 - L1MC4 LINE L1 -1339 6703 6614 500 211 11 38 chr4 38303506 38303691 -145984971 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 230 262 95 24 chr4 38303696 38303780 -145984882 - L1MC4 LINE L1 -1339 6703 6614 236 198 0 116 chr4 38303800 38303886 -145984776 + L1MC3 LINE L1 6571 6646 -1139 240 233 0 0 chr4 38303886 38303959 -145984703 + (CATATA)n Simple_repeat Simple_repeat 6 78 0 400 244 23 0 chr4 38303971 38304143 -145984519 + (CATATA)n Simple_repeat Simple_repeat 5 180 0 2059 96 4 4 chr4 38304157 38304448 -145984214 - AluY SINE Alu 0 302 12 591 258 74 26 chr4 38304493 38304683 -145983979 - L1ME3A LINE L1 -523 5639 5441 703 266 140 29 chr4 38304683 38304991 -145983671 - MLT1H LTR MaLR 0 549 208 1460 241 87 66 chr4 38305137 38305247 -145983415 - L1ME3A LINE L1 -735 5435 5329 2057 120 3 7 chr4 38305247 38305581 -145983081 - AluSx SINE Alu 0 333 1 1460 241 87 66 chr4 38305581 38306569 -145982093 - L1ME3A LINE L1 -841 5329 4299 2102 119 0 33 chr4 38306569 38306872 -145981790 + AluSx SINE Alu 3 295 -17 1460 241 87 66 chr4 38306872 38307132 -145981530 - L1ME3A LINE L1 -1871 4299 4046 523 274 15 50 chr4 38307563 38307636 -145981026 - MIR SINE MIR -46 216 142 595 197 32 75 chr4 38307636 38307824 -145980838 + MER104 DNA MER2_type 1 180 0 523 274 15 50 chr4 38307824 38307951 -145980711 - MIR SINE MIR -120 142 23 4372 136 69 80 chr4 38308033 38308567 -145980095 - MER4D LTR ERV1 0 903 382 2496 60 0 3 chr4 38308567 38308869 -145979793 + AluY SINE Alu 1 301 -10 4372 136 69 80 chr4 38308869 38309243 -145979419 - MER4D LTR ERV1 -521 382 5 181 306 81 36 chr4 38309408 38309519 -145979143 - L2 LINE L2 -4 3268 3153 786 259 82 0 chr4 38309846 38310066 -145978596 - LTR16C LTR ERVL -66 425 188 539 246 35 14 chr4 38310995 38311137 -145977525 + MIR SINE MIR 107 251 -11 218 184 0 0 chr4 38311733 38311771 -145976891 - MIR SINE MIR -65 197 160 189 107 0 0 chr4 38311928 38311956 -145976706 + (CAA)n Simple_repeat Simple_repeat 2 29 0 377 200 35 70 chr4 38312275 38312390 -145976272 + MIR SINE MIR 87 197 -65 373 270 0 0 chr4 38312390 38312490 -145976172 + L1ME3 LINE L1 5066 5165 -981 1424 245 107 88 chr4 38312531 38312629 -145976033 + MLT1G1 LTR MaLR 3 98 -497 2512 68 0 0 chr4 38312629 38312938 -145975724 + AluY SINE Alu 1 309 -2 1424 245 107 88 chr4 38312938 38313419 -145975243 + MLT1G1 LTR MaLR 98 593 -2 311 246 63 28 chr4 38313420 38313562 -145975100 + MLT1G1-int LTR MaLR 4 150 -1221 588 295 25 73 chr4 38313570 38313885 -145974777 + MLT1G1-int LTR MaLR 307 606 -765 189 0 0 0 chr4 38314218 38314239 -145974423 + (T)n Simple_repeat Simple_repeat 1 21 0 372 306 111 64 chr4 38314449 38314838 -145973824 + MLT1G1-int LTR MaLR 961 1367 -4 1059 245 97 92 chr4 38314842 38315261 -145973401 + MLT1G1 LTR MaLR 1 425 -170 2288 73 0 61 chr4 38315261 38315589 -145973073 + AluY SINE Alu 1 308 -3 1059 245 97 92 chr4 38315589 38315757 -145972905 + MLT1G1 LTR MaLR 425 591 -4 1020 244 67 42 chr4 38315773 38315814 -145972848 + L1ME3 LINE L1 5280 5318 -844 3709 122 61 0 chr4 38315814 38316355 -145972307 + L1PA15 LINE L1 5592 6165 0 1020 244 67 42 chr4 38316355 38316670 -145971992 + L1ME3 LINE L1 5318 5645 -517 1169 152 0 0 chr4 38316701 38316872 -145971790 + AluJb SINE Alu 128 298 -14 593 191 27 66 chr4 38316879 38317062 -145971600 + L1ME3 LINE L1 5984 6159 -3 2340 99 0 0 chr4 38317069 38317361 -145971301 + AluSg1 SINE Alu 1 292 -17 334 232 0 0 chr4 38317365 38317434 -145971228 + MIR SINE MIR 193 261 -1 670 302 133 27 chr4 38318368 38319031 -145969631 + L2 LINE L2 2531 3272 0 1160 152 0 0 chr4 38319457 38319628 -145969034 + AluJb SINE Alu 142 312 0 1216 135 0 0 chr4 38319970 38320140 -145968522 + AluSq SINE Alu 130 299 -14 2167 110 0 0 chr4 38320867 38321172 -145967490 + AluSx SINE Alu 1 305 0 234 91 0 0 chr4 38322939 38322972 -145965690 + (CA)n Simple_repeat Simple_repeat 1 33 0 2154 127 0 0 chr4 38323459 38323767 -145964895 + AluSx SINE Alu 1 308 0 2070 136 7 0 chr4 38324367 38324675 -145963987 - AluSx SINE Alu -2 310 1 412 234 18 9 chr4 38324675 38324786 -145963876 - MIR SINE MIR -81 181 70 1059 194 55 5 chr4 38324786 38324987 -145963675 - MLT1D LTR MaLR -294 211 1 418 320 16 31 chr4 38325309 38325437 -145963225 + MER91A DNA MER1_type 44 169 -27 1651 193 7 10 chr4 38325928 38326233 -145962429 + AluJo SINE Alu 1 304 -8 425 337 39 10 chr4 38326374 38326579 -145962083 + MIR SINE MIR 34 244 -18 292 330 0 19 chr4 38326747 38326853 -145961809 - MIR SINE MIR -112 150 47 2131 207 51 24 chr4 38327193 38327685 -145960977 + MLT1D LTR MaLR 1 505 0 214 277 142 5 chr4 38327811 38327953 -145960709 - MIR SINE MIR -19 243 18 342 329 13 44 chr4 38327973 38328131 -145960531 - MIR SINE MIR -58 204 52 1500 158 0 60 chr4 38328853 38329138 -145959524 - AluJb SINE Alu -13 299 32 283 283 54 33 chr4 38329273 38329365 -145959297 + L2 LINE L2 3143 3236 -36 1137 120 0 0 chr4 38329564 38329722 -145958940 + AluSq SINE Alu 132 289 -24 261 267 44 0 chr4 38329877 38329967 -145958695 - MIR3 SINE MIR -23 185 92 217 200 147 80 chr4 38330257 38330332 -145958330 + MIR SINE MIR 20 99 -109 388 237 30 30 chr4 38330437 38330568 -145958094 + LTR16B LTR ERVL 332 462 -2 438 246 57 33 chr4 38330656 38330778 -145957884 - L2 LINE L2 0 3272 3148 1974 196 106 23 chr4 38331134 38331614 -145957048 + MER74A LTR ERVL 1 520 -38 2739 121 36 12 chr4 38331932 38332344 -145956318 - MSTB LTR MaLR -4 422 1 21 0 0 0 chr4 38333348 38333369 -145955293 + AT_rich Low_complexity Low_complexity 1 21 0 558 242 160 52 chr4 38333747 38333978 -145954684 - MLT1J2 LTR MaLR -18 432 177 2335 169 93 0 chr4 38334156 38334564 -145954098 + MLT2B1 LTR ERVL 1 446 -74 688 138 83 28 chr4 38334588 38334733 -145953929 + MLT1E1 LTR MaLR 198 350 -304 1727 171 68 0 chr4 38334929 38335245 -145953417 - AluSx SINE Alu 0 339 5 272 258 155 32 chr4 38335414 38335569 -145953093 + L2 LINE L2 2684 2857 -457 21 0 0 0 chr4 38335829 38335850 -145952812 + AT_rich Low_complexity Low_complexity 1 21 0 315 0 0 0 chr4 38335926 38335961 -145952701 + (CA)n Simple_repeat Simple_repeat 2 36 0 685 277 130 9 chr4 38336053 38336284 -145952378 + MIR SINE MIR 2 260 -2 273 98 0 0 chr4 38336348 38336389 -145952273 + (TG)n Simple_repeat Simple_repeat 1 41 0 294 319 17 26 chr4 38336396 38336512 -145952150 + L2 LINE L2 3183 3297 -16 2412 157 38 26 chr4 38336805 38337226 -145951436 + MSTB LTR MaLR 1 426 0 2151 141 0 0 chr4 38337344 38337650 -145951012 + AluSx SINE Alu 1 306 -6 2889 104 3 3 chr4 38338104 38338479 -145950183 - THE1C LTR MaLR 0 375 1 2581 53 0 0 chr4 38339458 38339759 -145948903 - AluY SINE Alu -10 301 1 2276 144 30 41 chr4 38340169 38340242 -145948420 - THE1B LTR MaLR 0 364 292 2256 114 3 0 chr4 38340242 38340539 -145948123 + AluSp SINE Alu 1 298 -15 2276 144 30 41 chr4 38340539 38340833 -145947829 - THE1B LTR MaLR -72 292 1 238 275 28 64 chr4 38341120 38341229 -145947433 + HsTC2 DNA Tc2 22 126 -1772 669 270 133 0 chr4 38341313 38341524 -145947138 + MIR SINE MIR 9 247 -15 576 243 46 95 chr4 38341522 38341785 -145946877 - MIR SINE MIR 0 262 13 * 2248 104 0 0 chr4 38341838 38342127 -145946535 - AluSq SINE Alu -24 289 1 186 343 130 0 chr4 38343194 38343302 -145945360 + L2 LINE L2 3190 3311 -2 8419 165 67 38 chr4 38343494 38344121 -145944541 + L1MC3 LINE L1 5938 6545 -1240 1313 212 89 43 chr4 38344121 38344470 -145944192 - MLT1A1 LTR MaLR 0 365 1 8419 165 67 38 chr4 38344470 38345402 -145943260 + L1MC3 LINE L1 6545 7448 -337 2072 126 3 3 chr4 38345402 38345696 -145942966 + AluSx SINE Alu 1 294 -18 8419 165 67 38 chr4 38345696 38345738 -145942924 + L1MC3 LINE L1 7448 7487 -298 258 32 0 0 chr4 38345738 38345769 -145942893 + (CA)n Simple_repeat Simple_repeat 2 32 0 8419 165 67 38 chr4 38345769 38345954 -145942708 + L1MC3 LINE L1 7487 7779 -6 886 128 0 40 chr4 38347011 38347160 -145941502 - FLAM_C SINE Alu 0 143 1 492 18 0 0 chr4 38347285 38347342 -145941320 + (TTTC)n Simple_repeat Simple_repeat 3 59 0 2068 108 0 0 chr4 38347342 38347621 -145941041 - AluY SINE Alu -32 279 1 1768 194 22 22 chr4 38347947 38348312 -145940350 + MLT1A1 LTR MaLR 1 365 0 253 205 0 0 chr4 38348349 38348388 -145940274 + AluJ/monomer SINE Alu 1 39 -262 1822 178 23 34 chr4 38349072 38349421 -145939241 + MLT1A1 LTR MaLR 1 345 -20 574 226 16 130 chr4 38349786 38350109 -145938553 - MER5C DNA MER1_type 0 324 39 2078 244 21 28 chr4 38350124 38350693 -145937969 + L1ME3A LINE L1 5403 5967 -203 1707 183 0 4 chr4 38350776 38351055 -145937607 + AluJb SINE Alu 1 278 -34 435 149 0 0 chr4 38351061 38351135 -145937527 + (TA)n Simple_repeat Simple_repeat 2 75 0 368 197 152 45 chr4 38351291 38351469 -145937193 - MER5C DNA MER1_type 0 324 128 375 23 0 0 chr4 38351715 38351759 -145936903 + (TG)n Simple_repeat Simple_repeat 2 45 0 2144 119 0 0 chr4 38351761 38352039 -145936623 - AluSc SINE Alu -31 278 1 2047 113 28 3 chr4 38352044 38352327 -145936335 - AluSx SINE Alu -22 290 1 1602 188 0 20 chr4 38352689 38352987 -145935675 + AluJo SINE Alu 11 302 -10 312 240 115 0 chr4 38353733 38353829 -145934833 - MER5C DNA MER1_type -213 111 5 790 169 0 16 chr4 38354311 38354435 -145934227 - FLAM_A SINE Alu -7 126 5 595 309 136 18 chr4 38354435 38354817 -145933845 + L2 LINE L2 2886 3312 -1 416 254 109 70 chr4 38355422 38355623 -145933039 + MIR SINE MIR 40 248 -14 1903 161 16 10 chr4 38355679 38355989 -145932673 - AluJb SINE Alu 0 312 1 1563 259 178 29 chr4 38356101 38356747 -145931915 - L2 LINE L2 -5 3308 2760 1430 208 16 22 chr4 38356747 38357034 -145931628 + AluJo SINE Alu 2 288 -24 243 0 0 0 chr4 38357034 38357061 -145931601 + (TTTAA)n Simple_repeat Simple_repeat 1 27 0 1430 208 16 22 chr4 38357061 38357086 -145931576 + AluJo SINE Alu 288 312 0 1563 259 178 29 chr4 38357086 38357606 -145931056 - L2 LINE L2 -553 2760 1156 1693 137 0 8 chr4 38357625 38357873 -145930789 + AluSq SINE Alu 1 246 -67 2587 129 74 12 chr4 38358576 38358979 -145929683 - MSTA LTR MaLR 0 428 1 1203 285 39 30 chr4 38359098 38359558 -145929104 + MLT1J LTR MaLR 13 476 -35 225 0 0 0 chr4 38359785 38359810 -145928852 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 462 275 39 39 chr4 38359842 38360024 -145928638 + MER5A DNA MER1_type 7 188 -1 2122 130 3 0 chr4 38360081 38360380 -145928282 + AluSq SINE Alu 1 300 -13 2434 116 124 18 chr4 38360819 38361206 -145927456 - MSTA LTR MaLR 0 428 1 183 318 59 12 chr4 38361333 38361418 -145927244 - L2 LINE L2 -4 3309 3221 1520 177 19 105 chr4 38362184 38362333 -145926329 + MER58B DNA MER1_type 2 162 -2258 1568 213 0 10 chr4 38362333 38362624 -145926038 + AluJb SINE Alu 1 288 -24 1520 177 19 105 chr4 38362624 38362846 -145925816 + MER58B DNA MER1_type 162 341 0 241 347 0 0 chr4 38363014 38363086 -145925576 + L2 LINE L2 3136 3207 -65 228 189 0 38 chr4 38363107 38363160 -145925502 + L1MC4 LINE L1 6653 6703 -1339 * 255 175 5 26 chr4 38363129 38363206 -145925456 - L1MCa LINE L1 -1339 6983 1995 225 178 0 0 chr4 38363261 38363306 -145925356 + LTR66 LTR ERVL 395 439 -171 404 250 0 8 chr4 38363308 38363432 -145925230 + (CATA)n Simple_repeat Simple_repeat 4 126 0 1846 162 23 96 chr4 38363517 38363911 -145924751 + MLT1A1 LTR MaLR 1 365 0 238 277 219 23 chr4 38363948 38364204 -145924458 - L1MC4a LINE L1 -1662 6146 5841 341 244 17 26 chr4 38364776 38364891 -145923771 - L1MC4a LINE L1 -1973 5835 5722 21 0 0 0 chr4 38364902 38364923 -145923739 + AT_rich Low_complexity Low_complexity 1 21 0 269 348 22 7 chr4 38365117 38365255 -145923407 + L2 LINE L2 2910 3049 -223 4084 149 5 20 chr4 38365546 38365643 -145923019 + MER41B LTR ERV1 1 98 -537 1987 142 7 0 chr4 38365643 38365939 -145922723 - AluSx SINE Alu -14 298 1 4084 149 5 20 chr4 38365939 38366486 -145922176 + MER41B LTR ERV1 98 635 0 415 286 55 39 chr4 38366537 38366719 -145921943 + MIR SINE MIR 20 204 -58 21 36 0 0 chr4 38367019 38367047 -145921615 + AT_rich Low_complexity Low_complexity 1 28 0 753 268 131 63 chr4 38367644 38368216 -145920446 + MLT1L LTR MaLR 5 615 0 2123 134 0 3 chr4 38368358 38368663 -145919999 + AluSx SINE Alu 2 305 -7 2125 197 59 32 chr4 38369132 38369211 -145919451 + MLT1D LTR MaLR 1 76 -429 2280 159 19 11 chr4 38369211 38369583 -145919079 + THE1C LTR MaLR 1 375 0 2125 197 59 32 chr4 38369583 38369995 -145918667 + MLT1D LTR MaLR 76 505 0 249 299 216 0 chr4 38370006 38370140 -145918522 - MIR SINE MIR -38 224 62 662 254 17 6 chr4 38370201 38370374 -145918288 - MER5B DNA MER1_type 0 178 4 485 271 60 6 chr4 38370459 38370625 -145918037 - MER5B DNA MER1_type -2 176 2 309 311 60 70 chr4 38371397 38371696 -145916966 - MARNA DNA Mariner -148 438 143 1955 159 0 0 chr4 38371778 38372067 -145916595 + AluJb SINE Alu 1 289 -23 30 0 0 0 chr4 38372067 38372097 -145916565 + AT_rich Low_complexity Low_complexity 1 30 0 612 223 58 0 chr4 38372129 38372268 -145916394 + MIR SINE MIR 106 252 -10 737 298 62 48 chr4 38372328 38372825 -145915837 - MLT1K LTR MaLR -16 572 69 185 289 0 0 chr4 38372940 38372985 -145915677 - L2 LINE L2 -19 3294 3250 712 312 56 4 chr4 38373003 38373234 -145915428 - MIR SINE MIR 0 262 20 385 295 16 8 chr4 38373228 38373350 -145915312 - MIR SINE MIR -54 208 86 * 337 299 28 76 chr4 38373405 38373549 -145915113 + MER91A DNA MER1_type 1 137 -59 1950 116 49 0 chr4 38374033 38374317 -145914345 - AluSx SINE Alu -14 298 1 359 279 62 81 chr4 38374365 38374517 -145914145 + MLT1L LTR MaLR 11 159 -456 407 224 12 0 chr4 38374517 38374602 -145914060 - LTR16C LTR ERVL 0 491 406 413 185 107 24 chr4 38375185 38375299 -145913363 + MLT1J LTR MaLR 59 159 -291 2069 129 0 49 chr4 38375931 38376257 -145912405 - AluJb SINE Alu -2 310 1 249 254 87 32 chr4 38376549 38376675 -145911987 + MLT1J LTR MaLR 379 511 0 2915 16 0 0 chr4 38377099 38377416 -145911246 + AluYb8 SINE Alu 1 317 -1 272 223 116 36 chr4 38377744 38377856 -145910806 - L1ME4a LINE L1 -204 5917 5797 2428 59 41 31 chr4 38378087 38378407 -145910255 - L1PA12 LINE L1 0 6168 5846 1386 212 98 127 chr4 38378624 38379595 -145909067 + LTR1B LTR ERV1 1 1020 0 566 304 111 18 chr4 38380181 38380461 -145908201 + MLT1L LTR MaLR 308 613 -2 2398 124 48 22 chr4 38380543 38380898 -145907764 + THE1B LTR MaLR 1 364 0 12232 89 10 10 chr4 38380898 38382478 -145906184 + THE1B-int LTR MaLR 1 1580 0 1974 151 49 26 chr4 38382490 38382840 -145905822 + THE1B LTR MaLR 7 364 0 4002 139 12 71 chr4 38383313 38384047 -145904615 - LTR8 LTR ERV1 0 691 1 1797 160 225 13 chr4 38384185 38384567 -145904095 - LTR32 LTR ERVL 0 471 9 1675 183 106 43 chr4 38384865 38385192 -145903470 + LTR29 LTR ERV1 137 442 -153 2429 136 28 19 chr4 38385192 38385553 -145903109 + THE1B LTR MaLR 1 364 0 12153 94 14 6 chr4 38385553 38387121 -145901541 + THE1B-int LTR MaLR 1 1580 0 2122 126 7 126 chr4 38387121 38387534 -145901128 + THE1B LTR MaLR 1 364 0 1675 183 106 43 chr4 38387534 38387665 -145900997 + LTR29 LTR ERV1 441 591 -4 312 216 108 54 chr4 38387664 38387775 -145900887 - LTR8A LTR ERV1 -125 602 486 * 1252 132 13 70 chr4 38387896 38388124 -145900538 + MER20 DNA MER1_type 2 216 -3 2170 159 119 62 chr4 38388262 38388879 -145899783 - LTR8A LTR ERV1 0 727 34 202 310 101 16 chr4 38389506 38389635 -145899027 + L2 LINE L2 3133 3272 0 1217 221 58 42 chr4 38389996 38390426 -145898236 - LTR56 LTR ERV1 0 445 9 185 367 184 0 chr4 38391497 38391606 -145897056 - L2 LINE L2 0 3272 3144 889 240 47 47 chr4 38391623 38391923 -145896739 + LTR33 LTR ERVL 19 318 -203 654 174 94 7 chr4 38392589 38392727 -145895935 - MIR SINE MIR -105 157 8 803 256 78 8 chr4 38392754 38392996 -145895666 - MLT1J1 LTR MaLR 0 446 188 801 269 161 11 chr4 38393271 38393620 -145895042 - LTR33A LTR ERVL -16 507 107 575 186 145 8 chr4 38393621 38393745 -145894917 + MER49 LTR ERV1 1 141 -782 187 316 126 40 chr4 38394187 38394488 -145894174 + L2 LINE L2 1064 1390 -1924 281 26 0 26 chr4 38394720 38394759 -145893903 + (TG)n Simple_repeat Simple_repeat 1 38 0 315 291 9 18 chr4 38394864 38394974 -145893688 - L1ME LINE L1 -452 5669 5561 1849 175 3 0 chr4 38395384 38395687 -145892975 + AluJo SINE Alu 1 304 -8 250 339 9 0 chr4 38395775 38395890 -145892772 - L1ME LINE L1 -1131 5015 4900 327 245 21 43 chr4 38396068 38396162 -145892500 - MIR3 SINE MIR -12 196 105 506 309 14 0 chr4 38396681 38396820 -145891842 + MIR3 SINE MIR 62 202 -6 22 0 0 0 chr4 38397216 38397238 -145891424 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 38397968 38397990 -145890672 + AT_rich Low_complexity Low_complexity 1 22 0 324 0 0 0 chr4 38398177 38398213 -145890449 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1613 144 0 0 chr4 38398220 38398456 -145890206 - AluSx SINE Alu -57 255 20 242 36 0 0 chr4 38398467 38398495 -145890167 - AluY SINE Alu -253 48 21 418 259 59 70 chr4 38398515 38398801 -145889861 - L1ME3 LINE L1 -196 5966 5684 1083 209 163 30 chr4 38398838 38399139 -145889523 + MER58B DNA MER1_type 1 341 0 22 0 0 0 chr4 38399351 38399373 -145889289 + AT_rich Low_complexity Low_complexity 1 22 0 2438 121 149 52 chr4 38400124 38400647 -145888015 + MER4B LTR ERV1 1 761 -18 2185 94 25 0 chr4 38400647 38400946 -145887716 - AluSx SINE Alu 0 306 1 2438 121 149 52 chr4 38400946 38400967 -145887695 + MER4B LTR ERV1 761 779 0 1735 133 3 110 chr4 38401316 38401540 -145887122 - AluJb SINE Alu -11 301 123 2380 113 61 12 chr4 38401540 38401886 -145886776 + THE1B LTR MaLR 2 364 0 1735 133 3 110 chr4 38401886 38401998 -145886664 - AluJb SINE Alu -189 123 1 282 224 86 2 chr4 38402005 38402086 -145886576 - L1M1 LINE L1 -607 5577 5512 2110 141 0 0 chr4 38402706 38403011 -145885651 + AluSq SINE Alu 1 305 -8 2290 234 44 14 chr4 38403053 38403686 -145884976 - MER97a DNA MER1_type? 0 894 243 647 233 0 14 chr4 38403758 38403904 -145884758 + MER33 DNA MER1_type 2 145 -179 373 191 0 0 chr4 38403896 38403964 -145884698 + MLT1F1 LTR MaLR 500 567 0 * 565 158 39 31 chr4 38404137 38404264 -145884398 + L1MB3 LINE L1 6054 6181 -2 405 0 0 0 chr4 38404936 38404981 -145883681 + (TG)n Simple_repeat Simple_repeat 1 45 0 243 61 0 0 chr4 38404981 38405014 -145883648 + (GA)n Simple_repeat Simple_repeat 2 34 0 188 125 25 50 chr4 38405047 38405087 -145883575 - MER5B DNA MER1_type -124 54 16 2337 113 0 0 chr4 38405173 38405482 -145883180 - AluSc SINE Alu 0 309 1 541 222 216 0 chr4 38405495 38405662 -145883000 + L2 LINE L2 1945 2147 -1167 1523 271 91 35 chr4 38405743 38405937 -145882725 - HAL1 LINE L1 0 2507 2325 225 0 0 0 chr4 38405937 38405962 -145882700 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1523 271 91 35 chr4 38405962 38405997 -145882665 - HAL1 LINE L1 -182 2325 2293 1564 153 46 49 chr4 38405997 38406179 -145882483 - AluJb SINE Alu -6 306 124 2080 107 38 3 chr4 38406179 38406468 -145882194 + AluSp SINE Alu 5 303 -10 1564 153 46 49 chr4 38406468 38406592 -145882070 - AluJb SINE Alu -188 124 1 1523 271 91 35 chr4 38406592 38407110 -145881552 - HAL1 LINE L1 -214 2293 1717 2991 259 95 63 chr4 38407116 38407328 -145881334 - HAL1 LINE L1 -1087 1420 1216 1783 164 7 10 chr4 38407328 38407620 -145881042 + AluJb SINE Alu 1 291 -21 2991 259 95 63 chr4 38407620 38408774 -145879888 - HAL1 LINE L1 -1291 1216 10 2125 137 73 9 chr4 38409068 38409411 -145879251 + MLT1A1 LTR MaLR 1 365 0 2038 147 129 48 chr4 38410036 38410432 -145878230 - MSTA LTR MaLR 0 428 1 198 0 0 0 chr4 38410799 38410821 -145877841 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 198 0 0 0 chr4 38410883 38410905 -145877757 + (A)n Simple_repeat Simple_repeat 1 22 0 2439 87 0 3 chr4 38411408 38411720 -145876942 + AluSx SINE Alu 1 311 -1 361 267 23 0 chr4 38412060 38412146 -145876516 - L2 LINE L2 0 3313 3226 2039 191 26 19 chr4 38412269 38412361 -145876301 - MER63B DNA MER1_type -626 436 346 2514 122 96 15 chr4 38412361 38412756 -145875906 + MSTA LTR MaLR 1 427 -1 2039 191 26 19 chr4 38412756 38413088 -145875574 - MER63B DNA MER1_type -716 346 9 362 292 229 0 chr4 38413096 38413240 -145875422 - L2 LINE L2 -261 3052 2876 684 187 73 81 chr4 38413337 38413387 -145875275 + L1MC5 LINE L1 7350 7399 -562 2329 110 0 19 chr4 38413387 38413705 -145874957 + AluSx SINE Alu 1 312 0 684 187 73 81 chr4 38413705 38413900 -145874762 + L1MC5 LINE L1 7399 7593 -368 7065 52 14 19 chr4 38413909 38415414 -145873248 + SVA Other Other 5 1386 0 21 0 0 0 chr4 38415949 38415970 -145872692 + AT_rich Low_complexity Low_complexity 1 21 0 964 181 50 50 chr4 38416015 38416297 -145872365 + L1MC5 LINE L1 7580 7861 -100 448 322 20 45 chr4 38416631 38416830 -145871832 + MIR3 SINE MIR 3 196 -12 2253 119 0 0 chr4 38417265 38417559 -145871103 + AluSg SINE Alu 1 294 -16 1905 130 0 34 chr4 38418246 38418560 -145870102 + AluSx SINE Alu 1 304 0 1202 114 0 0 chr4 38418560 38418727 -145869935 + AluSg/x SINE Alu 135 301 -9 693 194 161 0 chr4 38418735 38418921 -145869741 - L1ME3A LINE L1 -28 6142 5927 809 219 70 0 chr4 38418943 38419144 -145869518 - L1ME1 LINE L1 -11 6155 5941 848 69 25 119 chr4 38419157 38419316 -145869346 - AluJb SINE Alu -11 301 158 798 234 20 63 chr4 38419358 38419610 -145869052 - L1ME1 LINE L1 -277 5893 5653 1727 208 39 48 chr4 38419762 38420175 -145868487 + LTR2 LTR ERV1 41 449 0 382 263 40 44 chr4 38420176 38420468 -145868194 - L1ME1 LINE L1 -1123 5023 4650 190 227 45 0 chr4 38420500 38420544 -145868118 + L2 LINE L2 3202 3247 -25 764 178 52 35 chr4 38421856 38422030 -145866632 + MER45A DNA AcHobo 1 177 -1 187 163 122 20 chr4 38422069 38422118 -145866544 + L2 LINE L2 3259 3312 -1 184 288 88 12 chr4 38423397 38423477 -145865185 + MIR SINE MIR 91 176 -86 297 346 37 0 chr4 38423682 38423818 -145864844 - MIR SINE MIR -86 176 36 219 69 0 0 chr4 38423948 38423977 -145864685 + (TA)n Simple_repeat Simple_repeat 1 29 0 411 211 192 0 chr4 38424440 38424544 -145864118 - L2 LINE L2 0 3313 3190 2163 134 3 0 chr4 38425015 38425320 -145863342 + AluJb SINE Alu 1 306 -6 1888 238 118 36 chr4 38425468 38426018 -145862644 - MLT1G1 LTR MaLR 0 595 1 227 330 0 62 chr4 38426215 38426327 -145862335 - L3 LINE CR1 -36 1541 1437 579 344 38 8 chr4 38426780 38427042 -145861620 - L3 LINE CR1 -128 1449 1180 1705 179 7 17 chr4 38427381 38427672 -145860990 + AluJo SINE Alu 5 292 -20 718 248 120 21 chr4 38427815 38428049 -145860613 - MIR SINE MIR -3 259 3 286 236 112 11 chr4 38428062 38428151 -145860511 + MIR SINE MIR 47 144 -118 1713 183 10 20 chr4 38428157 38428457 -145860205 + AluJo SINE Alu 1 297 -15 308 208 158 30 chr4 38429252 38429353 -145859309 - MIR SINE MIR 0 262 149 742 250 12 0 chr4 38429417 38429589 -145859073 - MER58B DNA MER1_type 0 341 168 288 111 0 0 chr4 38430950 38430995 -145857667 + (TG)n Simple_repeat Simple_repeat 2 46 0 849 175 44 92 chr4 38431099 38431327 -145857335 - MER20 DNA MER1_type -2 217 1 385 358 30 6 chr4 38431329 38431494 -145857168 + MIR3 SINE MIR 28 196 -12 2162 116 0 0 chr4 38432000 38432292 -145856370 - AluSx SINE Alu -20 292 1 2251 97 20 7 chr4 38433223 38433523 -145855139 - AluSq SINE Alu -9 304 1 2034 144 3 7 chr4 38434483 38434789 -145853873 - AluSx SINE Alu -3 309 5 606 211 15 0 chr4 38434828 38434961 -145853701 - MER58B DNA MER1_type -6 335 201 231 167 0 0 chr4 38435056 38435098 -145853564 + (TG)n Simple_repeat Simple_repeat 2 43 0 317 247 47 12 chr4 38435165 38435250 -145853412 + L1MC4 LINE L1 6619 6706 -1336 432 0 0 0 chr4 38435271 38435319 -145853343 + (TG)n Simple_repeat Simple_repeat 1 48 0 435 262 107 48 chr4 38435635 38435841 -145852821 - Charlie8 DNA MER1_type -2162 255 38 271 279 0 0 chr4 38435941 38436002 -145852660 + (TG)n Simple_repeat Simple_repeat 2 62 0 314 309 105 33 chr4 38436014 38436224 -145852438 - L1ME LINE L1 -492 5629 5405 301 91 18 18 chr4 38436281 38436336 -145852326 + (TA)n Simple_repeat Simple_repeat 1 55 0 696 226 65 57 chr4 38436716 38436784 -145851878 - MIR SINE MIR 0 262 196 1948 149 0 7 chr4 38436784 38437086 -145851576 - AluJb SINE Alu -12 300 1 696 226 65 57 chr4 38437086 38437265 -145851397 - MIR SINE MIR -66 196 13 375 242 53 8 chr4 38437303 38437435 -145851227 - L1 LINE L1 -1310 4836 4699 25 23 0 23 chr4 38437712 38437734 -145850928 + AT_rich Low_complexity Low_complexity 1 23 -19 2004 110 4 0 chr4 38437734 38437997 -145850665 - AluSp SINE Alu -14 299 36 25 23 0 23 chr4 38437997 38438017 -145850645 + AT_rich Low_complexity Low_complexity 23 42 0 2215 127 0 25 chr4 38438809 38439125 -145849537 + AluSx SINE Alu 1 308 -4 198 0 0 0 chr4 38439228 38439250 -145849412 + (TTTAA)n Simple_repeat Simple_repeat 3 24 0 1698 100 4 8 chr4 38490282 38490522 -145798140 + AluSg SINE Alu 49 287 -23 732 139 9 0 chr4 38490625 38490733 -145797929 - AluSg/x SINE Alu -11 301 193 2134 47 4 0 chr4 38490834 38491092 -145797570 - AluY SINE Alu -52 259 1 2329 91 3 0 chr4 38491094 38491403 -145797259 - AluSx SINE Alu -2 310 1 198 71 0 0 chr4 38491520 38491548 -145797114 + (GA)n Simple_repeat Simple_repeat 1 28 0 2243 89 0 3 chr4 38491878 38492182 -145796480 - AluSx SINE Alu -9 303 1 879 207 6 0 chr4 38492579 38492748 -145795914 - FRAM SINE Alu 0 40 1 587 168 11 0 chr4 38492748 38492843 -145795819 - AluJ/FLAM SINE Alu -215 97 2 537 357 24 39 chr4 38492965 38493220 -145795442 - L3 LINE CR1 -460 1117 867 552 307 22 39 chr4 38495103 38495282 -145793380 + MER91A DNA MER1_type 3 178 -18 22 35 0 0 chr4 38495306 38495335 -145793327 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 38495865 38495886 -145792776 + AT_rich Low_complexity Low_complexity 1 21 0 193 381 9 0 chr4 38496380 38496485 -145792177 + L2 LINE L2 2511 2616 -698 345 229 110 18 chr4 38496999 38497108 -145791554 + MIR SINE MIR 132 250 -12 1961 119 19 19 chr4 38497267 38497578 -145791084 + AluSq SINE Alu 3 313 0 592 145 16 32 chr4 38498572 38498657 -145790005 + Charlie4a DNA MER1_type 69 153 -1808 1292 133 87 5 chr4 38498657 38498875 -145789787 - MER46A DNA MER2_type 0 236 1 592 145 16 32 chr4 38498875 38498913 -145789749 + Charlie4a DNA MER1_type 153 190 -1771 1832 221 73 70 chr4 38498927 38499239 -145789423 - MER21B LTR ERV1 -62 869 559 2194 75 0 0 chr4 38499239 38499546 -145789116 + AluY SINE Alu 1 307 0 1832 221 73 70 chr4 38499546 38499908 -145788754 - MER21B LTR ERV1 -372 559 98 229 204 0 23 chr4 38499987 38500031 -145788631 - MER21B LTR ERV1 -780 83 41 933 214 110 3 chr4 38500064 38500354 -145788308 + Charlie4a DNA MER1_type 188 508 0 22 0 0 0 chr4 38500600 38500622 -145788040 + AT_rich Low_complexity Low_complexity 1 22 0 198 316 18 0 chr4 38500710 38500767 -145787895 - L2 LINE L2 0 3313 3256 1028 112 0 0 chr4 38501135 38501278 -145787384 + AluSg/x SINE Alu 158 300 -10 21 0 0 0 chr4 38501516 38501537 -145787125 + AT_rich Low_complexity Low_complexity 1 21 0 203 319 155 17 chr4 38501544 38501660 -145787002 - L2 LINE L2 -20 3293 3162 186 43 0 0 chr4 38501668 38501691 -145786971 + (TG)n Simple_repeat Simple_repeat 2 24 0 1659 159 11 25 chr4 38501723 38502006 -145786656 + AluJo SINE Alu 11 289 -23 2131 101 3 7 chr4 38502118 38502415 -145786247 - AluSc SINE Alu -13 296 1 528 278 73 40 chr4 38502415 38502663 -145785999 + L2 LINE L2 3051 3306 -7 184 300 20 0 chr4 38503453 38503503 -145785159 - L2 LINE L2 -17 3255 3205 522 211 88 119 chr4 38504814 38504963 -145783699 - MIR SINE MIR -2 260 121 662 139 0 111 chr4 38504963 38505107 -145783555 + FLAM_A SINE Alu 1 128 -5 522 211 88 119 chr4 38505107 38505217 -145783445 - MIR SINE MIR -141 121 9 249 276 200 14 chr4 38505241 38505386 -145783276 - L3b LINE CR1 -135 1448 1277 743 190 61 37 chr4 38505781 38505944 -145782718 - MER5A DNA MER1_type -8 181 15 231 61 0 0 chr4 38506266 38506299 -145782363 + (CCCTG)n Simple_repeat Simple_repeat 3 35 0 265 384 20 0 chr4 38506585 38506736 -145781926 + L2 LINE L2 2934 3087 -185 1943 113 7 20 chr4 38507196 38507498 -145781164 + AluSc SINE Alu 1 298 -11 313 143 129 14 chr4 38507674 38507744 -145780918 - MADE1 DNA Mariner -2 78 1 382 351 73 64 chr4 38508426 38508756 -145779906 - L2 LINE L2 -5 3267 2935 781 246 0 6 chr4 38508898 38509069 -145779593 + FRAM SINE Alu 1 164 -12 963 148 7 0 chr4 38509340 38509495 -145779167 + AluJb SINE Alu 136 291 -21 565 213 33 0 chr4 38509859 38509981 -145778681 + MER5B DNA MER1_type 53 178 0 353 298 16 0 chr4 38509993 38510114 -145778548 + MER5B DNA MER1_type 3 125 -53 2850 71 5 14 chr4 38510921 38511288 -145777374 - THE1B LTR MaLR 0 364 1 199 222 0 83 chr4 38511882 38511954 -145776708 - MER5B DNA MER1_type -111 67 2 756 115 0 0 chr4 38512031 38512135 -145776527 + MLT1C LTR MaLR 1 104 -363 1450 155 21 4 chr4 38512135 38512374 -145776288 - Tigger5 DNA MER2_type 0 2323 2081 365 241 0 13 chr4 38512368 38512447 -145776215 - Tigger5 DNA MER2_type -2245 78 1 * 1993 159 13 27 chr4 38512447 38512817 -145775845 + MLT1C LTR MaLR 103 467 0 1543 186 13 19 chr4 38513679 38513991 -145774671 - AluJb SINE Alu 0 312 3 307 261 234 43 chr4 38514474 38514658 -145774004 + MIR SINE MIR 30 248 -14 4285 143 106 1 chr4 38515244 38516598 -145772064 - pTR5 LTR ERV1 0 2606 1524 25 0 0 0 chr4 38516624 38516649 -145772013 + AT_rich Low_complexity Low_complexity 1 25 0 2175 116 0 3 chr4 38516691 38517002 -145771660 - AluSg SINE Alu 0 310 1 335 345 129 14 chr4 38517955 38518164 -145770498 + MIR SINE MIR 29 261 -1 563 311 52 4 chr4 38518589 38518837 -145769825 - MIR SINE MIR 0 262 3 701 224 23 0 chr4 38519435 38519609 -145769053 - MER96B DNA MER1_type? -239 178 1 314 359 39 0 chr4 38520800 38520903 -145767759 + L2 LINE L2 3121 3227 -45 200 200 0 0 chr4 38521068 38521103 -145767559 - MIR SINE MIR -55 153 119 2377 64 0 10 chr4 38522078 38522415 -145766247 - AluY SINE Alu 0 334 1 851 224 0 0 chr4 38522417 38522578 -145766084 - FRAM SINE Alu -5 161 1 24 0 0 0 chr4 38522945 38522969 -145765693 + AT_rich Low_complexity Low_complexity 1 24 0 1458 174 64 7 chr4 38522978 38523259 -145765403 + AluJb SINE Alu 1 297 -15 362 229 48 12 chr4 38523296 38523379 -145765283 - MIR SINE MIR -72 190 105 454 157 90 60 chr4 38523586 38523720 -145764942 - MER117 DNA MER1_type -27 170 33 342 0 0 0 chr4 38523809 38523847 -145764815 + (TGGA)n Simple_repeat Simple_repeat 3 40 0 556 282 102 23 chr4 38524918 38525134 -145763528 + MIR SINE MIR 20 252 -10 1384 244 48 11 chr4 38525206 38525641 -145763021 + L1 LINE L1 3223 3673 -2473 955 224 58 42 chr4 38525653 38525912 -145762750 + L2 LINE L2 3049 3311 -2 492 279 140 41 chr4 38526024 38526283 -145762379 - L2 LINE L2 -1262 2052 1735 1941 92 0 22 chr4 38526283 38526555 -145762107 + AluY SINE Alu 1 266 -45 492 279 140 41 chr4 38526555 38526710 -145761952 - L2 LINE L2 -1579 1735 1597 1956 87 80 0 chr4 38527250 38527537 -145761125 - AluSg SINE Alu 0 310 1 478 196 134 27 chr4 38528832 38528944 -145759718 - L2 LINE L2 0 3313 3190 252 154 0 0 chr4 38529354 38529406 -145759256 + (TG)n Simple_repeat Simple_repeat 2 53 0 224 317 129 10 chr4 38529492 38529593 -145759069 + MIR SINE MIR 20 132 -130 631 294 47 19 chr4 38529619 38529833 -145758829 - MIR SINE MIR -22 240 21 632 207 41 0 chr4 38529917 38530038 -145758624 - MLT1J LTR MaLR -133 378 253 22 0 0 0 chr4 38530248 38530270 -145758392 + AT_rich Low_complexity Low_complexity 1 22 0 699 243 102 35 chr4 38530285 38530511 -145758151 - MLT1J LTR MaLR -270 241 1 1975 183 46 3 chr4 38531387 38531737 -145756925 + MLT1A1 LTR MaLR 1 365 0 185 323 32 65 chr4 38532397 38532490 -145756172 - L3b LINE CR1 -85 1498 1409 339 274 210 6 chr4 38532962 38533119 -145755543 - MIR3 SINE MIR 0 208 20 659 312 98 0 chr4 38533369 38533584 -145755078 + MIR SINE MIR 8 243 -19 22 35 0 0 chr4 38533753 38533782 -145754880 + AT_rich Low_complexity Low_complexity 1 29 0 1904 150 0 3 chr4 38533834 38534141 -145754521 + AluSx SINE Alu 1 306 -6 779 246 103 88 chr4 38534151 38534549 -145754113 - MLT1J2 LTR MaLR -15 431 28 510 243 0 0 chr4 38534655 38534758 -145753904 - L2 LINE L2 0 3313 3211 393 246 31 23 chr4 38534799 38534929 -145753733 + MER69 DNA AcHobo 2395 2525 -1 390 206 152 49 chr4 38534930 38535114 -145753548 - L2 LINE L2 -97 3216 3014 334 300 43 21 chr4 38535127 38535267 -145753395 - L1ME LINE L1 -381 5740 5598 2062 145 10 0 chr4 38535545 38535848 -145752814 + AluSg SINE Alu 1 306 -4 405 293 21 21 chr4 38535848 38535988 -145752674 - MIR3 SINE MIR -33 175 36 186 192 0 39 chr4 38536111 38536163 -145752499 + MIR SINE MIR 174 223 -39 895 58 69 0 chr4 38536970 38537244 -145751418 + (TAGA)n Simple_repeat Simple_repeat 3 294 0 257 328 8 47 chr4 38537658 38537786 -145750876 - L2 LINE L2 -1 3271 3149 731 281 13 91 chr4 38538016 38538367 -145750295 - MLT1I LTR MaLR -1 408 102 263 372 107 30 chr4 38538424 38538650 -145750012 - L2 LINE L2 -385 2929 2722 2420 100 0 0 chr4 38538650 38538959 -145749703 + AluSx SINE Alu 1 309 -3 263 372 107 30 chr4 38538959 38539292 -145749370 - L2 LINE L2 -592 2722 2319 1877 198 117 5 chr4 38539292 38539712 -145748950 + MLT1C LTR MaLR 1 467 0 263 372 107 30 chr4 38539712 38539750 -145748912 - L2 LINE L2 -995 2319 2285 510 312 89 61 chr4 38540000 38540461 -145748201 - L2 LINE L2 -8 3305 2832 234 0 0 0 chr4 38540461 38540487 -145748175 + (TG)n Simple_repeat Simple_repeat 2 27 0 328 281 70 9 chr4 38540501 38540615 -145748047 - L2 LINE L2 -638 2676 2556 2425 174 21 2 chr4 38541284 38541708 -145746954 + MSTB1 LTR MaLR 1 432 0 241 292 0 52 chr4 38542707 38542803 -145745859 + L1ME4a LINE L1 5955 6045 -76 189 0 0 0 chr4 38543408 38543429 -145745233 + (CCCCCA)n Simple_repeat Simple_repeat 2 22 0 1305 194 69 22 chr4 38544823 38544906 -145743756 - MER33 DNA MER1_type -2261 324 246 2260 116 0 0 chr4 38544906 38545208 -145743454 + AluSc SINE Alu 1 302 -7 1305 194 69 22 chr4 38545208 38545230 -145743432 - MER33 DNA MER1_type -2339 246 226 941 252 132 22 chr4 38545230 38545587 -145743075 + MSTD LTR MaLR 1 396 0 1305 194 69 22 chr4 38545587 38545802 -145742860 - MER33 DNA MER1_type -2359 226 1 2288 184 44 0 chr4 38545953 38546361 -145742301 + MSTB LTR MaLR 1 426 0 2145 124 24 37 chr4 38547218 38547598 -145741064 + THE1C LTR MaLR 1 375 0 384 285 175 26 chr4 38549021 38549460 -145739202 - L2 LINE L2 -1 3312 2799 339 311 56 67 chr4 38549463 38549530 -145739132 + MLT1J LTR MaLR 5 71 -379 2412 72 0 20 chr4 38549530 38549836 -145738826 - AluSx SINE Alu -12 300 1 339 311 56 67 chr4 38549836 38549981 -145738681 + MLT1J LTR MaLR 71 175 -275 851 170 79 0 chr4 38550116 38550281 -145738381 + MER5A DNA MER1_type 12 189 0 1137 159 18 49 chr4 38550289 38550515 -145738147 - MER20 DNA MER1_type 0 219 1 313 243 40 81 chr4 38550525 38550673 -145737989 + MLT1J LTR MaLR 330 471 -40 418 255 59 39 chr4 38550712 38550865 -145737797 - L2 LINE L2 -511 2803 2648 350 234 175 36 chr4 38550869 38551006 -145737656 - L2 LINE L2 -809 2505 2350 288 271 0 24 chr4 38551099 38551184 -145737478 + L1MC4a LINE L1 5736 5818 -1990 2041 104 73 3 chr4 38551191 38551479 -145737183 + AluSc SINE Alu 1 308 -1 358 252 206 37 chr4 38551519 38551733 -145736929 + MIR SINE MIR 13 262 0 259 260 100 10 chr4 38551742 38551842 -145736820 + L1MC4a LINE L1 5829 5937 -1871 234 229 0 33 chr4 38552852 38552913 -145735749 + MIR SINE MIR 183 241 -21 266 288 127 67 chr4 38553144 38553205 -145735457 - L3 LINE CR1 -685 892 836 795 211 50 6 chr4 38553205 38553385 -145735277 - MER5A DNA MER1_type -1 188 1 266 288 127 67 chr4 38553385 38553638 -145735024 - L3 LINE CR1 -741 836 559 481 299 23 11 chr4 38553638 38553812 -145734850 - MER5B DNA MER1_type 0 178 3 342 263 66 29 chr4 38553910 38554047 -145734615 - L3 LINE CR1 -1102 475 334 229 283 150 0 chr4 38554133 38554253 -145734409 - MIR SINE MIR 0 262 125 1185 188 207 39 chr4 38555334 38555643 -145733019 - MLT1A1 LTR MaLR -4 361 1 248 235 134 84 chr4 38555853 38555972 -145732690 + L2 LINE L2 3155 3279 -34 904 248 178 9 chr4 38556958 38557401 -145731261 + Charlie7 DNA MER1_type 1803 2320 -292 1148 257 96 20 chr4 38558690 38559205 -145729457 + MLT2E LTR ERVL 7 608 -20 21 36 0 0 chr4 38560934 38560962 -145727700 + AT_rich Low_complexity Low_complexity 1 28 0 249 275 43 0 chr4 38562245 38562314 -145726348 + MLT1I LTR MaLR 330 401 -8 624 156 0 0 chr4 38563037 38563146 -145725516 + (CA)n Simple_repeat Simple_repeat 2 110 0 723 200 91 78 chr4 38565016 38565336 -145723326 + L1M4 LINE L1 5045 5368 -778 330 264 194 8 chr4 38565567 38565696 -145722966 + L2 LINE L2 3107 3259 -13 183 260 20 0 chr4 38566072 38566122 -145722540 + MIR3 SINE MIR 149 199 -9 2581 63 0 0 chr4 38566166 38566468 -145722194 - AluSq SINE Alu -11 302 1 495 209 11 0 chr4 38566592 38566683 -145721979 + MLT1A1 LTR MaLR 274 365 0 450 231 0 0 chr4 38568714 38568831 -145719831 + (CA)n Simple_repeat Simple_repeat 1 117 0 467 221 133 65 chr4 38568840 38568911 -145719751 - MIR SINE MIR -10 252 187 2700 49 0 0 chr4 38568911 38569217 -145719445 - AluY SINE Alu -5 306 1 467 221 133 65 chr4 38569217 38569349 -145719313 - MIR SINE MIR -75 187 36 232 98 0 0 chr4 38569364 38569405 -145719257 + MADE1 DNA Mariner 40 80 0 210 233 17 50 chr4 38569658 38569718 -145718944 + L2 LINE L2 3246 3303 -10 439 298 21 0 chr4 38570461 38570652 -145718010 - L1ME LINE L1 -317 5804 5610 2149 112 6 13 chr4 38570698 38571010 -145717652 - AluSx SINE Alu -2 310 1 602 263 86 17 chr4 38571719 38571951 -145716711 + LTR33 LTR ERVL 21 268 -253 2205 181 29 84 chr4 38572017 38572603 -145716059 + MLT2B3 LTR ERVL 1 554 0 309 240 60 20 chr4 38572622 38572722 -145715940 + LTR33 LTR ERVL 410 513 -8 426 217 0 11 chr4 38572953 38573045 -145715617 - L2 LINE L2 0 3313 3223 1941 157 0 10 chr4 38573280 38573586 -145715076 - AluJo SINE Alu -9 303 1 2169 114 3 3 chr4 38574309 38574607 -145714055 + AluSg SINE Alu 1 298 -12 2125 141 0 0 chr4 38575610 38575916 -145712746 + AluSx SINE Alu 1 306 -6 480 237 69 91 chr4 38575916 38576088 -145712574 + Charlie8 DNA MER1_type 48 215 -115 2411 88 0 7 chr4 38576088 38576394 -145712268 + AluSg1 SINE Alu 1 304 -5 480 237 69 91 chr4 38576394 38576453 -145712209 + Charlie8 DNA MER1_type 215 274 -56 197 311 33 44 chr4 38576460 38576550 -145712112 - MIR SINE MIR -90 118 30 1512 145 4 0 chr4 38577437 38577671 -145710991 - AluSg/x SINE Alu -7 303 69 331 258 98 89 chr4 38578108 38578333 -145710329 - L1M4 LINE L1 -1978 4168 3942 1743 177 128 41 chr4 38578334 38578430 -145710232 - LOR1b LTR ERV1 0 461 375 2103 108 47 0 chr4 38578430 38578727 -145709935 - AluY SINE Alu 0 311 1 1743 177 128 41 chr4 38578727 38579043 -145709619 - LOR1b LTR ERV1 -86 375 13 2196 130 0 0 chr4 38579146 38579453 -145709209 - AluSx SINE Alu -5 307 1 399 253 41 36 chr4 38579458 38579652 -145709010 - L1M4 LINE L1 -2365 3781 3587 302 256 87 99 chr4 38579671 38579983 -145708679 - L1M4 LINE L1 -2629 3517 3210 829 183 16 52 chr4 38579983 38580174 -145708488 - AluJo SINE Alu -3 309 126 2525 63 0 7 chr4 38580257 38580559 -145708103 - AluY SINE Alu -11 300 1 397 279 26 19 chr4 38580793 38580947 -145707715 - L1MEd LINE L1 -5961 158 4 2159 115 7 10 chr4 38581704 38582009 -145706653 - AluSg SINE Alu -6 304 1 815 297 81 44 chr4 38582012 38582530 -145706132 - L1MC4a LINE L1 -303 5818 5352 23 54 0 0 chr4 38582636 38582673 -145705989 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr4 38582833 38582855 -145705807 + AT_rich Low_complexity Low_complexity 1 22 0 260 276 35 0 chr4 38583223 38583310 -145705352 + MIR SINE MIR 3 92 -170 787 142 12 31 chr4 38583347 38583509 -145705153 - THE1C LTR MaLR -21 354 196 238 125 214 0 chr4 38583610 38583666 -145704996 - MLT1F-int LTR MaLR -1302 69 2 2099 212 54 17 chr4 38583683 38584202 -145704460 - MLT1F LTR MaLR -2 540 3 1860 280 135 31 chr4 38584264 38584839 -145703823 - L2 LINE L2 -12 3301 2787 1853 69 53 4 chr4 38584839 38585086 -145703576 + AluY SINE Alu 38 296 -15 1860 280 135 31 chr4 38585086 38585757 -145702905 - L2 LINE L2 -526 2787 1923 25 0 0 0 chr4 38585834 38585859 -145702803 + AT_rich Low_complexity Low_complexity 1 25 0 458 258 30 15 chr4 38587170 38587302 -145701360 + MER5A DNA MER1_type 56 189 0 272 286 114 29 chr4 38588615 38588720 -145699942 + MIR3 SINE MIR 72 185 -23 914 124 8 0 chr4 38589835 38589964 -145698698 + FLAM_C SINE Alu 1 130 -3 505 282 56 45 chr4 38590197 38590552 -145698110 + L1ME4a LINE L1 5672 6030 -91 33 43 0 0 chr4 38590664 38590711 -145697951 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr4 38591873 38591894 -145696768 + AT_rich Low_complexity Low_complexity 1 21 0 230 265 0 0 chr4 38592239 38592288 -145696374 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 286 300 41 59 chr4 38592505 38592675 -145695987 + MIR SINE MIR 31 197 -65 2145 111 3 7 chr4 38593006 38593333 -145695329 - AluSx SINE Alu 0 312 1 377 295 168 6 chr4 38593344 38593517 -145695145 - MIR SINE MIR -14 248 48 210 368 21 21 chr4 38593854 38593998 -145694664 - MIR3 SINE MIR -23 185 42 2078 133 0 27 chr4 38594137 38594438 -145694224 + AluSx SINE Alu 1 293 -19 567 96 64 8 chr4 38594595 38594720 -145693942 + GA-rich Low_complexity Low_complexity 6 137 0 291 284 32 0 chr4 38595183 38595278 -145693384 + L2 LINE L2 3192 3289 -24 382 238 12 0 chr4 38595878 38595958 -145692704 - MER5A DNA MER1_type -100 89 9 243 0 0 0 chr4 38596084 38596111 -145692551 + (A)n Simple_repeat Simple_repeat 1 27 0 273 260 185 34 chr4 38597489 38597568 -145691094 + MER5A DNA MER1_type 22 88 -101 2703 45 0 3 chr4 38597568 38597877 -145690785 - AluY SINE Alu -3 308 1 273 260 185 34 chr4 38597877 38597943 -145690719 + MER5A DNA MER1_type 88 189 0 2386 156 68 29 chr4 38598166 38598652 -145690010 - MLT1D LTR MaLR 0 505 1 538 232 0 0 chr4 38598795 38598907 -145689755 - MER5A DNA MER1_type -77 112 1 1328 227 108 58 chr4 38599184 38599553 -145689109 + MLT1C LTR MaLR 1 397 -70 2561 71 0 3 chr4 38599553 38599861 -145688801 - AluSx SINE Alu -5 307 1 1328 227 108 58 chr4 38599861 38599936 -145688726 + MLT1C LTR MaLR 397 467 0 1095 218 4 27 chr4 38600255 38600480 -145688182 - MER58A DNA MER1_type 0 224 5 455 193 43 64 chr4 38601494 38601617 -145687045 - MIR SINE MIR -57 205 82 1982 143 167 19 chr4 38601617 38601803 -145686859 - MSTA LTR MaLR -2 426 269 180 0 0 0 chr4 38601803 38601823 -145686839 + (GA)n Simple_repeat Simple_repeat 1 20 0 1982 143 167 19 chr4 38601823 38602007 -145686655 - MSTA LTR MaLR -159 269 1 455 193 43 64 chr4 38602007 38602079 -145686583 - MIR SINE MIR -180 82 10 1617 188 0 14 chr4 38602513 38602827 -145685835 + AluJo SINE Alu 1 310 0 1880 225 118 6 chr4 38602888 38603364 -145685298 + MLT1H LTR MaLR 2 530 -19 281 253 50 66 chr4 38603397 38603579 -145685083 + L1MC1 LINE L1 5639 5817 -304 2050 121 74 6 chr4 38603735 38604058 -145684604 + L1MC1 LINE L1 5989 6333 0 2249 120 3 0 chr4 38604362 38604663 -145683999 - AluSx SINE Alu -10 302 1 2463 144 18 39 chr4 38604698 38604848 -145683814 - MSTA LTR MaLR 0 428 276 2399 54 0 10 chr4 38604848 38605142 -145683520 - AluY SINE Alu -19 292 2 2463 144 18 39 chr4 38605142 38605428 -145683234 - MSTA LTR MaLR -152 276 1 360 0 0 0 chr4 38605568 38605608 -145683054 + (TG)n Simple_repeat Simple_repeat 2 41 0 1282 194 53 106 chr4 38605668 38606265 -145682397 + L1MC5 LINE L1 6501 7065 -896 404 203 0 13 chr4 38606273 38606352 -145682310 - MLT1D LTR MaLR -421 84 7 322 315 138 7 chr4 38607718 38607867 -145680795 + MIR SINE MIR 17 182 -68 310 250 68 0 chr4 38608593 38608681 -145679981 - MER103 DNA DNA -51 115 22 516 260 67 0 chr4 38608783 38608933 -145679729 + LTR33 LTR ERVL 3 162 -359 542 236 76 0 chr4 38608990 38609134 -145679528 + LTR33 LTR ERVL 277 431 -90 205 273 45 11 chr4 38611624 38611712 -145676950 - MIR SINE MIR -70 192 102 281 297 49 22 chr4 38611717 38611902 -145676760 + MIR SINE MIR 53 242 -20 921 279 85 41 chr4 38613152 38613706 -145674956 - L1ME4a LINE L1 -216 5905 5320 649 220 45 34 chr4 38613838 38614015 -145674647 + MER97c DNA MER1_type? 1 179 -911 356 283 151 13 chr4 38614245 38614404 -145674258 - MER5A DNA MER1_type 0 189 9 626 246 31 66 chr4 38615318 38615546 -145673116 + MER58A DNA MER1_type 1 220 -4 216 157 214 14 chr4 38615643 38615713 -145672949 + MIR SINE MIR 93 176 -86 2173 133 3 0 chr4 38615724 38616026 -145672636 + AluSx SINE Alu 1 303 -9 1888 163 54 9 chr4 38617099 38617431 -145671231 + MER7A DNA MER2_type 1 345 -1 321 287 23 0 chr4 38620677 38620764 -145667898 - L2 LINE L2 -5 3308 3220 261 0 0 0 chr4 38621687 38621716 -145666946 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 231 237 34 0 chr4 38625527 38625586 -145663076 - L2 LINE L2 -4 3268 3208 343 309 120 42 chr4 38626749 38627108 -145661554 - L2 LINE L2 -5 3308 2922 505 208 71 56 chr4 38627123 38627335 -145661327 + MIR SINE MIR 10 234 -28 2229 114 0 3 chr4 38628016 38628324 -145660338 + AluSq SINE Alu 1 307 -6 204 97 0 0 chr4 38629337 38629368 -145659294 + (TG)n Simple_repeat Simple_repeat 2 32 0 1279 198 81 0 chr4 38629382 38629680 -145658982 - MER33 DNA MER1_type 0 324 3 909 222 6 0 chr4 38630126 38630293 -145658369 + MER45A DNA AcHobo 1 168 -10 336 203 14 54 chr4 38631644 38631718 -145656944 + Charlie1 DNA MER1_type 1 71 -2690 1111 173 112 46 chr4 38631718 38632112 -145656550 + Charlie1 DNA MER1_type 2342 2761 0 225 306 58 16 chr4 38633029 38633150 -145655512 + MER5A DNA MER1_type 37 162 -27 477 213 52 77 chr4 38633801 38633956 -145654706 - MER63 DNA MER1_type -285 777 1 207 0 0 0 chr4 38635810 38635833 -145652829 + (A)n Simple_repeat Simple_repeat 1 23 0 249 314 50 25 chr4 38637235 38637356 -145651306 - L2 LINE L2 -15 3298 3175 3397 156 7 4 chr4 38637424 38637977 -145650685 + L1PA16 LINE L1 5608 6162 -4 338 245 69 0 chr4 38638015 38638117 -145650545 + MIR SINE MIR 80 188 -74 2462 70 0 7 chr4 38638356 38638656 -145650006 + AluY SINE Alu 1 298 -13 451 214 0 2 chr4 38638756 38638925 -145649737 + MER2 DNA MER2_type 144 345 0 1816 175 3 7 chr4 38639701 38640009 -145648653 - AluJo SINE Alu -5 307 1 2314 40 0 0 chr4 38640358 38640631 -145648031 - L1PA4 LINE L1 -8 6147 5875 289 337 77 0 chr4 38641463 38641644 -145647018 - MIR SINE MIR -10 252 58 829 225 145 66 chr4 38641993 38642400 -145646262 + MLT1D LTR MaLR 5 390 0 540 206 38 23 chr4 38643060 38643191 -145645471 + MER94 DNA DNA 1 133 -1 211 339 33 33 chr4 38644301 38644422 -145644240 - MIR3 SINE MIR -16 192 72 213 319 14 0 chr4 38644521 38644590 -145644072 + MIR SINE MIR 77 146 -116 2138 100 0 48 chr4 38644730 38644866 -145643796 + AluSq SINE Alu 1 142 -171 2508 70 0 10 chr4 38644866 38645167 -145643495 + AluY SINE Alu 1 298 -13 2138 100 0 48 chr4 38645167 38645340 -145643322 + AluSq SINE Alu 142 295 -18 942 177 135 15 chr4 38645580 38645840 -145642822 - MER5C DNA MER1_type -1 323 33 456 274 98 12 chr4 38645913 38646077 -145642585 - MIR SINE MIR -79 183 6 192 254 153 25 chr4 38646755 38646873 -145641789 + L2 LINE L2 2442 2574 -740 393 224 84 35 chr4 38646984 38647127 -145641535 - L3 LINE CR1 -195 1382 1233 24 0 0 0 chr4 38647569 38647593 -145641069 + AT_rich Low_complexity Low_complexity 1 24 0 288 143 0 41 chr4 38648657 38648706 -145639956 + AluSp SINE Alu 120 166 -137 2185 130 0 0 chr4 38648835 38649142 -145639520 + AluSx SINE Alu 1 307 -5 1883 148 0 11 chr4 38649838 38650122 -145638540 - AluJb SINE Alu -31 281 1 196 349 18 28 chr4 38650149 38650258 -145638404 - MIR SINE MIR -147 115 8 23 33 0 0 chr4 38650279 38650309 -145638353 + AT_rich Low_complexity Low_complexity 1 30 0 1894 219 87 15 chr4 38650536 38651056 -145637606 + L1MB8 LINE L1 5622 6178 0 2391 55 0 39 chr4 38651317 38651666 -145636996 - AluY SINE Alu 0 338 2 470 261 19 6 chr4 38652660 38652817 -145635845 - MIR SINE MIR -15 247 89 593 288 74 93 chr4 38653400 38653927 -145634735 - L3 LINE CR1 -816 761 245 252 77 0 0 chr4 38654376 38654415 -145634247 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 477 286 49 5 chr4 38654615 38654800 -145633862 + MIR SINE MIR 16 208 -54 556 274 61 74 chr4 38654869 38655248 -145633414 + MLT1H LTR MaLR 29 402 -147 232 259 99 25 chr4 38655216 38655297 -145633365 + MLT1I LTR MaLR 281 367 -42 * 479 340 57 39 chr4 38655620 38655902 -145632760 - L2 LINE L2 -1 3312 3026 2092 108 0 0 chr4 38656443 38656712 -145631950 + AluSg SINE Alu 1 269 -41 368 255 201 7 chr4 38656806 38656955 -145631707 - MER5A DNA MER1_type -1 188 11 2258 91 0 0 chr4 38657482 38657767 -145630895 + AluSx SINE Alu 12 296 -16 544 292 68 68 chr4 38657817 38658290 -145630372 - L2 LINE L2 0 3313 2841 522 310 50 25 chr4 38659755 38659997 -145628665 + MIR SINE MIR 12 259 -3 3036 193 70 35 chr4 38662131 38662835 -145625827 + L1MB3 LINE L1 5440 6167 -16 1845 108 10 98 chr4 38662916 38663223 -145625439 - AluSx SINE Alu -14 298 19 735 75 83 8 chr4 38665511 38665610 -145623052 + MER30 DNA MER1_type 1 112 -118 216 0 0 0 chr4 38665610 38665634 -145623028 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 735 75 83 8 chr4 38665634 38665654 -145623008 + MER30 DNA MER1_type 112 129 -101 234 270 36 102 chr4 38666272 38666409 -145622253 + MIR3 SINE MIR 35 162 -46 527 139 66 209 chr4 38666648 38666892 -145621770 + MER3 DNA MER1_type 1 209 0 2355 74 3 14 chr4 38668321 38668617 -145620045 + AluSc SINE Alu 1 293 -16 1779 161 7 16 chr4 38668863 38669167 -145619495 + AluJo SINE Alu 1 301 -11 182 365 28 9 chr4 38669416 38669523 -145619139 + MIR SINE MIR 14 122 -140 2229 102 0 13 chr4 38669547 38669850 -145618812 + AluSx SINE Alu 3 301 -11 304 237 53 61 chr4 38670112 38670226 -145618436 + MER5A DNA MER1_type 77 189 0 500 104 0 104 chr4 38670251 38670347 -145618315 + AluS SINE Alu 5 90 -222 581 313 30 30 chr4 38671235 38671468 -145617194 - MIR SINE MIR 0 262 30 1062 68 0 0 chr4 38671477 38671610 -145617052 - AluSp/q SINE Alu -5 308 176 236 191 0 0 chr4 38672091 38672138 -145616524 - L2 LINE L2 -2 3311 3265 597 258 46 94 chr4 38672271 38672600 -145616062 + MLT1I LTR MaLR 72 384 -25 206 195 0 0 chr4 38673107 38673148 -145615514 - L2 LINE L2 -9 3304 3264 515 236 42 35 chr4 38674278 38674422 -145614240 - MIR SINE MIR -53 209 65 246 241 0 0 chr4 38676340 38676394 -145612268 - MER91B DNA MER1_type -136 54 1 267 164 127 0 chr4 38676660 38676715 -145611947 - HAL1 LINE L1 -2004 503 442 262 194 16 32 chr4 38676715 38676777 -145611885 + LTR49 LTR ERV1 459 519 -76 761 264 139 11 chr4 38676842 38677122 -145611540 - HAL1 LINE L1 -2107 400 85 1894 122 4 0 chr4 38677133 38677388 -145611274 + AluSx SINE Alu 1 256 -56 22 0 0 0 chr4 38677388 38677410 -145611252 + AT_rich Low_complexity Low_complexity 1 22 0 2168 118 3 0 chr4 38678039 38678328 -145610334 - AluSx SINE Alu -22 290 1 1685 285 93 25 chr4 38678527 38678879 -145609783 - L2 LINE L2 -5 3308 2981 2329 99 0 3 chr4 38678879 38679191 -145609471 + AluSx SINE Alu 1 311 -1 1685 285 93 25 chr4 38679191 38679788 -145608874 - L2 LINE L2 -332 2981 2268 1911 146 9 44 chr4 38679791 38680112 -145608550 + AluSx SINE Alu 1 310 -2 2350 179 179 0 chr4 38680163 38680611 -145608051 + MLT1A1-int LTR MaLR 1208 1735 0 774 167 35 14 chr4 38680611 38680755 -145607907 + MLT1A1 LTR MaLR 1 147 -218 2109 138 0 13 chr4 38681568 38681879 -145606783 - AluSx SINE Alu -5 307 1 312 27 0 0 chr4 38682824 38682861 -145605801 + (CCA)n Simple_repeat Simple_repeat 2 38 0 2239 114 7 7 chr4 38682876 38683184 -145605478 - AluSg SINE Alu -2 308 1 2230 116 3 0 chr4 38683733 38684034 -145604628 + AluSg SINE Alu 1 302 -8 210 209 0 0 chr4 38684302 38684345 -145604317 - L2 LINE L2 -216 3056 3014 315 214 351 15 chr4 38684425 38684556 -145604106 - MER5A DNA MER1_type -6 183 9 2379 59 0 3 chr4 38684923 38685211 -145603451 + AluY SINE Alu 1 309 0 199 0 0 0 chr4 38685211 38685233 -145603429 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 503 293 129 24 chr4 38685934 38686268 -145602394 - L2 LINE L2 -18 3295 2927 860 203 127 38 chr4 38686376 38686613 -145602049 + MIR SINE MIR 5 262 0 205 280 13 13 chr4 38686814 38686889 -145601773 + L2 LINE L2 2440 2514 -800 2200 102 0 3 chr4 38686915 38687228 -145601434 - AluSx SINE Alu 0 312 1 1479 216 90 29 chr4 38687451 38687938 -145600724 - LTR33A LTR ERVL 0 523 7 4324 85 2 0 chr4 38687953 38688506 -145600156 + MER41A LTR ERV1 1 554 0 23 0 0 0 chr4 38689319 38689342 -145599320 + AT_rich Low_complexity Low_complexity 1 23 0 783 292 16 20 chr4 38689588 38689893 -145598769 + L1ME4a LINE L1 5546 5849 -272 249 167 0 0 chr4 38689939 38689975 -145598687 + Alu SINE Alu 136 171 -131 1332 167 4 43 chr4 38689975 38690087 -145598575 + 7SLRNA srpRNA srpRNA 75 175 -145 2324 108 0 0 chr4 38690087 38690393 -145598269 + AluSg SINE Alu 1 306 -4 1332 167 4 43 chr4 38690393 38690513 -145598149 + 7SLRNA srpRNA srpRNA 175 298 -22 319 241 0 27 chr4 38690527 38690602 -145598060 + L1ME4a LINE L1 5985 6058 -63 751 158 47 8 chr4 38690602 38690729 -145597933 - FLAM_A SINE Alu -1 132 1 319 241 0 27 chr4 38690729 38690765 -145597897 + L1ME4a LINE L1 6058 6093 -28 309 179 150 29 chr4 38690831 38690847 -145597815 - L1MA10 LINE L1 0 6334 6319 2013 215 111 46 chr4 38690847 38691541 -145597121 - L1ME1 LINE L1 -5 6161 5423 2030 150 73 51 chr4 38691541 38691593 -145597069 + LOR1b LTR ERV1 1 50 -411 848 173 0 0 chr4 38691593 38691726 -145596936 - FLAM_C SINE Alu 0 133 1 2030 150 73 51 chr4 38691726 38692086 -145596576 + LOR1b LTR ERV1 50 422 -39 1443 189 44 19 chr4 38692088 38692482 -145596180 - L1ME1 LINE L1 -752 5394 5016 443 197 111 0 chr4 38692475 38692592 -145596070 - L1M4 LINE L1 -890 5256 5127 * 613 178 11 38 chr4 38692646 38692831 -145595831 + CT-rich Low_complexity Low_complexity 1 180 0 1137 121 17 6 chr4 38694072 38694245 -145594417 + AluSg/x SINE Alu 127 301 -9 2129 181 27 74 chr4 38694552 38694952 -145593710 + L1MB8 LINE L1 5674 6045 -133 2162 110 0 0 chr4 38694952 38695243 -145593419 + AluSx SINE Alu 14 304 -8 2129 181 27 74 chr4 38695243 38695366 -145593296 + L1MB8 LINE L1 6045 6172 -6 777 209 17 6 chr4 38695479 38695651 -145593011 + MER96 DNA MER1_type 2 175 0 181 271 0 68 chr4 38695897 38695956 -145592706 - MIR SINE MIR -179 83 29 180 211 90 115 chr4 38696719 38696875 -145591787 + MER5B DNA MER1_type 8 159 -19 297 239 261 0 chr4 38697991 38698121 -145590541 + MER5A DNA MER1_type 26 189 0 6310 84 8 0 chr4 38698323 38699151 -145589511 + L1PA10 LINE L1 5334 6168 0 475 306 73 13 chr4 38700975 38701207 -145587455 + MIR SINE MIR 17 262 0 213 245 71 52 chr4 38701529 38701684 -145586978 - L2 LINE L2 -308 3005 2848 218 339 142 0 chr4 38701837 38701964 -145586698 + L3 LINE CR1 618 762 -815 1793 167 4 0 chr4 38702060 38702341 -145586321 - AluJo SINE Alu -30 282 1 431 162 0 14 chr4 38702874 38702948 -145585714 + MER6 DNA MER2_type 793 865 0 260 310 9 18 chr4 38704144 38704257 -145584405 + MARNA DNA Mariner 284 395 -191 22 35 0 0 chr4 38705489 38705518 -145583144 + AT_rich Low_complexity Low_complexity 1 29 0 745 268 51 0 chr4 38705523 38705758 -145582904 - MIR SINE MIR -10 252 6 412 282 144 17 chr4 38705832 38706013 -145582649 - MIR SINE MIR -27 235 32 666 298 31 4 chr4 38706268 38706493 -145582169 + MIR SINE MIR 18 248 -14 234 331 24 39 chr4 38706560 38706687 -145581975 + L2 LINE L2 3188 3312 -1 2348 111 0 13 chr4 38707269 38707585 -145581077 - AluSx SINE Alu 0 312 1 597 260 83 0 chr4 38708011 38708192 -145580470 - MIR SINE MIR -14 248 54 239 298 262 0 chr4 38708238 38708379 -145580283 - MER5A DNA MER1_type -2 187 10 642 199 194 52 chr4 38708683 38708874 -145579788 - MER20 DNA MER1_type -1 218 1 2528 60 10 0 chr4 38710911 38711210 -145577452 + AluY SINE Alu 1 302 -9 684 306 55 4 chr4 38711389 38711624 -145577038 + MIR SINE MIR 16 262 0 307 238 0 38 chr4 38712987 38713067 -145575595 - MIR3 SINE MIR -24 184 108 303 264 101 8 chr4 38713075 38713204 -145575458 - MIR SINE MIR -11 251 111 484 237 48 38 chr4 38713306 38713492 -145575170 + MIR SINE MIR 58 245 -17 798 188 47 18 chr4 38715031 38715201 -145573461 + MER5A DNA MER1_type 6 180 -9 2027 125 3 14 chr4 38715405 38715702 -145572960 - AluSq SINE Alu -19 294 1 1703 171 35 49 chr4 38716343 38716711 -145571951 - MLT1A2 LTR MaLR -11 363 1 22 0 0 0 chr4 38717496 38717518 -145571144 + AT_rich Low_complexity Low_complexity 1 22 0 2628 85 33 3 chr4 38718735 38719099 -145569563 + THE1C LTR MaLR 1 375 0 2284 102 3 0 chr4 38720085 38720379 -145568283 + AluSg SINE Alu 1 295 -15 235 346 90 8 chr4 38721415 38721548 -145567114 - MIR SINE MIR -93 169 26 891 173 31 45 chr4 38721548 38721773 -145566889 + L1MB2 LINE L1 5286 5474 -706 3653 149 31 16 chr4 38721855 38722532 -145566130 + L1MB2 LINE L1 5483 6169 -2 3732 171 33 14 chr4 38724015 38724709 -145563953 + MER50 LTR ERV1 2 708 -26 253 95 0 0 chr4 38725525 38725567 -145563095 + Alu SINE Alu 259 300 -2 303 93 0 0 chr4 38725688 38725731 -145562931 + (CA)n Simple_repeat Simple_repeat 2 44 0 799 204 26 0 chr4 38726253 38726405 -145562257 - FRAM SINE Alu -9 157 2 196 277 252 8 chr4 38727449 38727568 -145561094 - MIR3 SINE MIR -7 201 54 182 231 110 55 chr4 38728793 38728884 -145559778 + MIR SINE MIR 65 160 -102 21 36 0 0 chr4 38729135 38729163 -145559499 + AT_rich Low_complexity Low_complexity 1 28 0 803 147 28 7 chr4 38730317 38730460 -145558202 + L1PB4 LINE L1 6008 6153 -3 22 0 0 0 chr4 38730532 38730554 -145558108 + AT_rich Low_complexity Low_complexity 1 22 0 2236 80 0 27 chr4 38730568 38730868 -145557794 - AluY SINE Alu -19 292 1 21 0 0 0 chr4 38731295 38731316 -145557346 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 38731632 38731653 -145557009 + AT_rich Low_complexity Low_complexity 1 21 0 1063 203 48 0 chr4 38731865 38732072 -145556590 - MER58A DNA MER1_type -6 218 2 217 237 194 43 chr4 38734720 38734859 -145553803 + MIR3 SINE MIR 25 184 -24 3641 187 81 14 chr4 38735600 38736369 -145552293 + L1MC1 LINE L1 5514 6333 0 242 234 50 106 chr4 38736851 38736876 -145551786 - MARNA DNA Mariner -211 375 350 2361 89 0 22 chr4 38736876 38737192 -145551470 - AluY SINE Alu -2 309 1 242 234 50 106 chr4 38737192 38737307 -145551355 - MARNA DNA Mariner -236 350 243 646 289 53 19 chr4 38737319 38737407 -145551255 + L1ME3A LINE L1 5943 6027 -143 2144 120 0 13 chr4 38737407 38737708 -145550954 - AluSx SINE Alu -15 297 1 646 289 53 19 chr4 38737708 38737827 -145550835 + L1ME3A LINE L1 6027 6157 -13 225 200 20 20 chr4 38737953 38738003 -145550659 + Alu SINE Alu 2 51 -269 1000 210 0 0 chr4 38738126 38738293 -145550369 + FAM SINE Alu 1 167 -8 249 241 52 0 chr4 38738343 38738401 -145550261 + MARNA DNA Mariner 454 514 -72 2072 122 0 7 chr4 38740251 38740547 -145548115 + AluSg SINE Alu 1 294 -16 1248 85 50 50 chr4 38741380 38741454 -145547208 - MER30 DNA MER1_type -31 199 126 2233 104 7 0 chr4 38741454 38741753 -145546909 + AluSg SINE Alu 1 301 -9 1248 85 50 50 chr4 38741753 38741780 -145546882 - MER30 DNA MER1_type -104 126 100 213 65 0 0 chr4 38741780 38741811 -145546851 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1248 85 50 50 chr4 38741811 38741907 -145546755 - MER30 DNA MER1_type -129 101 1 1871 148 0 42 chr4 38742266 38742576 -145546086 - AluJb SINE Alu -14 298 2 451 272 75 14 chr4 38742617 38742764 -145545898 - MIR SINE MIR -9 253 98 266 262 0 0 chr4 38743469 38743530 -145545132 - MIR SINE MIR -61 147 87 292 291 85 45 chr4 38743733 38743932 -145544730 - MIR SINE MIR -6 256 50 301 335 45 45 chr4 38744144 38744389 -145544273 + L2 LINE L2 1761 2005 -1309 210 333 0 0 chr4 38744478 38744532 -145544130 + L2 LINE L2 3194 3247 -25 3090 72 3 0 chr4 38745025 38745388 -145543274 + THE1B LTR MaLR 1 364 0 2138 123 30 0 chr4 38745891 38746191 -145542471 - AluSq SINE Alu -4 309 1 25 0 0 0 chr4 38746484 38746509 -145542153 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 38746639 38746661 -145542001 + AT_rich Low_complexity Low_complexity 1 22 0 304 339 151 0 chr4 38749391 38749609 -145539053 + L2 LINE L2 2563 2813 -501 286 292 124 72 chr4 38749715 38750006 -145538656 - L2 LINE L2 -50 3263 2958 540 328 160 9 chr4 38750220 38750558 -145538104 + L2 LINE L2 2922 3310 -3 2251 86 7 3 chr4 38753475 38753767 -145534895 + AluSg SINE Alu 1 293 -17 1653 176 33 0 chr4 38753993 38754294 -145534368 + AluJo SINE Alu 1 311 -1 2428 93 0 3 chr4 38755185 38755498 -145533164 - AluSp SINE Alu -1 312 1 327 353 58 43 chr4 38755713 38756112 -145532550 - L2 LINE L2 -666 2648 2244 345 283 52 58 chr4 38758694 38758867 -145529795 + MER5B DNA MER1_type 1 172 -6 2193 109 0 0 chr4 38759240 38759524 -145529138 + AluSx SINE Alu 5 288 -24 206 81 27 0 chr4 38759531 38759568 -145529094 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 2227 109 0 10 chr4 38760010 38760314 -145528348 + AluSc SINE Alu 1 301 -8 252 311 74 82 chr4 38762567 38762920 -145525742 + L2 LINE L2 2634 2981 -291 186 263 71 20 chr4 38762918 38763017 -145525645 - MIR3 SINE MIR -27 181 78 * 1338 127 122 0 chr4 38764371 38764576 -145524086 + MER30 DNA MER1_type 1 230 0 309 361 42 42 chr4 38764736 38764927 -145523735 - L3b LINE CR1 -23 1560 1370 195 269 59 59 chr4 38764935 38765054 -145523608 - MIR3 SINE MIR -23 185 67 4990 141 77 26 chr4 38765211 38766070 -145522592 - MER4D LTR ERV1 0 903 1 348 291 8 31 chr4 38766117 38766244 -145522418 + MIR3 SINE MIR 85 208 0 264 301 171 36 chr4 38766249 38766442 -145522220 - MIR SINE MIR -16 246 28 353 310 53 0 chr4 38766494 38766607 -145522055 - MIR3 SINE MIR -3 205 87 273 243 105 116 chr4 38767433 38767614 -145521048 + MIR SINE MIR 73 251 -11 2000 113 48 0 chr4 38768069 38768360 -145520302 + AluSx SINE Alu 1 305 -7 346 207 12 61 chr4 38768500 38768582 -145520080 + MIR SINE MIR 64 141 -67 252 111 0 0 chr4 38769017 38769053 -145519609 + MIR SINE MIR 198 233 -29 315 175 29 126 chr4 38769476 38769579 -145519083 + MLT1H LTR MaLR 457 549 0 2211 112 0 7 chr4 38769645 38769939 -145518723 + AluSx SINE Alu 1 292 -20 9592 218 61 43 chr4 38770682 38770993 -145517669 + L1ME1 LINE L1 2355 2659 -3507 2142 126 10 3 chr4 38770993 38771302 -145517360 - AluSq SINE Alu -2 311 1 9592 218 61 43 chr4 38771302 38773224 -145515438 + L1ME1 LINE L1 2659 4546 -1620 2220 96 20 0 chr4 38773224 38773527 -145515135 - AluY SINE Alu -2 309 1 1878 157 28 0 chr4 38773529 38773815 -145514847 - AluJb SINE Alu -18 294 1 9592 218 61 43 chr4 38773815 38774807 -145513855 + L1ME1 LINE L1 4546 5673 -493 2288 82 0 0 chr4 38774807 38775119 -145513543 - AluY SINE Alu 0 312 1 9592 218 61 43 chr4 38775119 38775567 -145513095 + L1ME1 LINE L1 5673 6112 -54 1825 146 7 4 chr4 38775574 38775854 -145512808 - AluJb SINE Alu -18 294 14 2226 151 43 3 chr4 38775980 38776332 -145512330 - MER47A DNA MER2_type 0 366 1 307 281 144 36 chr4 38776375 38776484 -145512178 + MIR3 SINE MIR 17 152 -56 1810 163 123 6 chr4 38776484 38776810 -145511852 - MLT1A1 LTR MaLR -1 364 1 307 281 144 36 chr4 38776810 38776867 -145511795 + MIR3 SINE MIR 152 201 -7 315 260 110 16 chr4 38776937 38777064 -145511598 - MIR SINE MIR -45 217 79 365 282 43 0 chr4 38777379 38777496 -145511166 - MIR SINE MIR -35 227 106 235 290 0 0 chr4 38777583 38777611 -145511051 + GA-rich Low_complexity Low_complexity 3 30 -41 2333 92 0 7 chr4 38777611 38777917 -145510745 + AluSg SINE Alu 1 304 -6 235 290 0 0 chr4 38777917 38777957 -145510705 + GA-rich Low_complexity Low_complexity 29 71 0 701 101 44 8 chr4 38778135 38778383 -145510279 + (CA)n Simple_repeat Simple_repeat 1 257 0 830 67 34 22 chr4 38778403 38778581 -145510081 + (CA)n Simple_repeat Simple_repeat 1 180 0 249 109 0 0 chr4 38778861 38778907 -145509755 + (TC)n Simple_repeat Simple_repeat 2 47 0 229 292 130 11 chr4 38779087 38779250 -145509412 + MIR SINE MIR 40 226 -36 392 253 21 79 chr4 38779933 38780123 -145508539 - L2 LINE L2 -598 2716 2538 1999 123 27 20 chr4 38780166 38780467 -145508195 - AluSq SINE Alu -9 304 2 457 222 17 8 chr4 38780520 38780637 -145508025 + L1MB2 LINE L1 4132 4249 -1897 1366 240 10 30 chr4 38830787 38831222 -145457440 + L1MB2 LINE L1 5511 5912 -259 2077 153 106 22 chr4 38831224 38831430 -145457232 + L1MA9 LINE L1 5431 5618 -694 245 27 54 0 chr4 38831430 38831467 -145457195 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 2077 153 106 22 chr4 38831467 38831664 -145456998 + L1MA9 LINE L1 5618 5868 -444 1827 118 14 0 chr4 38831701 38831980 -145456682 + AluSx SINE Alu 1 283 -29 1000 165 69 58 chr4 38832087 38832348 -145456314 - pTR5 LTR ERV1 -1432 1006 743 1647 86 108 4 chr4 38832348 38832580 -145456082 - LTR12 LTR ERV1 -406 308 53 250 269 0 0 chr4 38832580 38832632 -145456030 - LTR30 LTR ERV1 -670 52 1 189 391 75 23 chr4 38832991 38833124 -145455538 - L2 LINE L2 -1 3271 3132 213 313 0 25 chr4 38833437 38833517 -145455145 - MIR SINE MIR -12 250 173 3116 110 221 132 chr4 38833703 38835004 -145453658 + pTR5 LTR ERV1 1167 2438 0 659 242 82 10 chr4 38835831 38836025 -145452637 - MIR SINE MIR -25 237 30 732 176 6 16 chr4 38836342 38836524 -145452138 + CT-rich Low_complexity Low_complexity 1 180 0 424 278 11 56 chr4 38839799 38839979 -145448683 - MIR SINE MIR -60 202 31 190 257 81 27 chr4 38840733 38840807 -145447855 + L2 LINE L2 3190 3267 -46 1886 119 3 35 chr4 38841766 38842051 -145446611 + AluSx SINE Alu 1 276 -36 189 0 0 0 chr4 38842055 38842076 -145446586 + (GAAA)n Simple_repeat Simple_repeat 2 22 0 564 262 13 13 chr4 38842204 38842353 -145446309 + MIR SINE MIR 13 161 -101 201 121 0 0 chr4 38842417 38842450 -145446212 + (ATGGTG)n Simple_repeat Simple_repeat 1 33 0 390 208 14 0 chr4 38842537 38842609 -145446053 + MER5A DNA MER1_type 115 187 -2 1353 245 80 47 chr4 38843102 38843592 -145445070 - MLT1J LTR MaLR -5 506 1 600 214 54 36 chr4 38843593 38843761 -145444901 - MIR SINE MIR -61 201 31 430 115 29 29 chr4 38844626 38844730 -145443932 + CT-rich Low_complexity Low_complexity 3 106 0 432 67 0 0 chr4 38844777 38844837 -145443825 + (TG)n Simple_repeat Simple_repeat 2 61 0 263 65 0 0 chr4 38844839 38844870 -145443792 - U2 snRNA snRNA -152 36 6 183 80 0 0 chr4 38845494 38845519 -145443143 + (TCC)n Simple_repeat Simple_repeat 3 27 0 688 169 22 0 chr4 38846475 38846628 -145442034 - L1PA12 LINE L1 -95 6073 5918 444 19 0 0 chr4 38847663 38847716 -145440946 + (TG)n Simple_repeat Simple_repeat 2 54 0 2028 110 11 0 chr4 38847716 38847989 -145440673 - AluSx SINE Alu -27 285 10 3636 139 22 17 chr4 38848396 38848529 -145440133 + L1MB3 LINE L1 5585 5716 -467 2536 155 46 10 chr4 38848529 38848942 -145439720 - MSTA LTR MaLR 0 428 1 3636 139 22 17 chr4 38848942 38849397 -145439265 + L1MB3 LINE L1 5716 6176 -7 821 247 158 41 chr4 38849530 38849872 -145438790 - MLT1J1 LTR MaLR -15 431 17 4110 91 16 44 chr4 38850355 38850479 -145438183 - MER41A LTR ERV1 0 554 428 1775 87 14 79 chr4 38850479 38850756 -145437906 + AluSx SINE Alu 35 293 -19 4110 91 16 44 chr4 38850756 38851201 -145437461 - MER41A LTR ERV1 -126 428 1 225 336 9 19 chr4 38851329 38851436 -145437226 - MIR SINE MIR -63 145 40 254 258 113 57 chr4 38851653 38851901 -145436761 - L1MC4a LINE L1 -1639 6169 5908 1859 166 17 84 chr4 38852396 38852786 -145435876 - MLT1B LTR MaLR -1 389 27 2148 104 10 0 chr4 38852786 38853075 -145435587 - AluSq SINE Alu -1 312 21 1859 166 17 84 chr4 38853075 38853101 -145435561 - MLT1B LTR MaLR -363 27 1 216 0 0 0 chr4 38855627 38855651 -145433011 + (A)n Simple_repeat Simple_repeat 1 24 0 295 272 104 58 chr4 38855894 38856067 -145432595 + MIR3 SINE MIR 28 208 0 219 332 111 46 chr4 38856948 38857157 -145431505 + L2 LINE L2 2184 2415 -899 1349 216 95 43 chr4 38857157 38857504 -145431158 + MLT1A1 LTR MaLR 1 365 0 219 332 111 46 chr4 38857504 38857556 -145431106 + L2 LINE L2 2415 2462 -852 209 200 0 0 chr4 38857726 38857766 -145430896 - L2 LINE L2 -1 3312 3273 1030 228 24 5 chr4 38858312 38858523 -145430139 + MER58A DNA MER1_type 10 224 0 457 304 17 21 chr4 38858531 38858696 -145429966 - MIR SINE MIR -25 183 10 251 313 54 18 chr4 38858929 38859041 -145429621 + L2 LINE L2 3185 3300 -13 570 299 112 23 chr4 38859137 38859351 -145429311 + MIR SINE MIR 30 262 0 8457 205 8 19 chr4 38861403 38863240 -145425422 - L1P LINE L1 -1022 5124 3309 4863 212 7 1 chr4 38863239 38864244 -145424418 - L1PA15-16 LINE L1 -4040 2809 1799 * 1804 312 12 14 chr4 38864253 38864811 -145423851 - L1PA15-16 LINE L1 -6230 609 53 313 192 0 68 chr4 38864823 38864896 -145423766 - MLT1C LTR MaLR -346 121 54 510 338 82 28 chr4 38865501 38865889 -145422773 - LTR16C LTR ERVL -2 489 81 1919 158 20 0 chr4 38865923 38866220 -145422442 - AluJb SINE Alu -9 303 1 2346 80 19 15 chr4 38867386 38867710 -145420952 + THE1B LTR MaLR 40 364 0 784 285 75 9 chr4 38867753 38868072 -145420590 - MLT1L LTR MaLR -77 538 199 1004 262 116 46 chr4 38868257 38868585 -145420077 + L1MC5 LINE L1 7270 7574 -387 2103 126 0 10 chr4 38868585 38868886 -145419776 + AluSx SINE Alu 1 298 -14 1004 262 116 46 chr4 38868886 38869163 -145419499 + L1MC5 LINE L1 7574 7917 -44 2251 125 35 37 chr4 38869218 38869594 -145419068 - THE1C LTR MaLR 0 375 1 235 364 108 16 chr4 38869835 38869964 -145418698 - LTR67 LTR ERVL -313 244 104 327 280 10 10 chr4 38870117 38870217 -145418445 - MLT1L LTR MaLR -483 132 33 623 177 24 6 chr4 38870418 38870582 -145418080 + CT-rich Low_complexity Low_complexity 2 168 0 1997 111 64 77 chr4 38872289 38872666 -145415996 - Tigger2 DNA MER2_type 0 2718 2347 672 211 0 0 chr4 38872665 38872793 -145415869 - Tigger2 DNA MER2_type -2590 128 1 * 1118 238 44 47 chr4 38873039 38873422 -145415240 - L1M4 LINE L1 -866 5280 4899 1104 301 48 15 chr4 38873442 38873903 -145414759 - L1MEc LINE L1 -5885 511 36 43919 46 5 2 chr4 38874078 38880213 -145408449 - L1PA4 LINE L1 0 6155 1 668 75 25 108 chr4 38880344 38880421 -145408241 - L1PA13 LINE L1 -11 6152 6087 2276 105 3 7 chr4 38880421 38880727 -145407935 - AluSx SINE Alu -7 305 1 668 75 25 108 chr4 38880727 38880769 -145407893 - L1PA13 LINE L1 -76 6087 6043 7289 221 58 25 chr4 38880874 38881577 -145407085 - L1M4 LINE L1 -1603 4543 3865 2073 92 28 0 chr4 38881577 38881860 -145406802 - AluY SINE Alu -20 291 1 7289 221 58 25 chr4 38881860 38883181 -145405481 - L1M4 LINE L1 -2281 3865 2452 778 250 65 13 chr4 38883179 38883521 -145405141 - L1ME LINE L1 -686 5476 5119 * 387 105 0 0 chr4 38883571 38883628 -145405034 + (TG)n Simple_repeat Simple_repeat 2 58 0 1054 169 107 111 chr4 38883632 38884018 -145404644 - MLT2B1 LTR ERVL -40 480 1 840 224 10 15 chr4 38884083 38884279 -145404383 - L1ME LINE L1 -1217 4929 4735 1874 211 46 95 chr4 38884303 38884863 -145403799 - MLT1F LTR MaLR -9 533 1 299 276 0 0 chr4 38884863 38884939 -145403723 - L1ME LINE L1 -1407 4739 4664 909 209 16 0 chr4 38884949 38885009 -145403653 - AluJo SINE Alu 0 456 398 429 135 34 0 chr4 38885009 38885098 -145403564 + CT-rich Low_complexity Low_complexity 3 94 0 909 209 16 0 chr4 38885098 38885281 -145403381 - AluJo SINE Alu -58 398 122 1242 254 82 11 chr4 38885281 38885746 -145402916 - L1ME LINE L1 -1491 4655 4158 993 196 38 5 chr4 38885746 38885930 -145402732 - MER58A DNA MER1_type -8 216 27 1035 273 60 24 chr4 38885940 38886273 -145402389 + L1MC4 LINE L1 7557 7901 -141 245 281 0 31 chr4 38886808 38886872 -145401790 - L3 LINE CR1 -2 1575 1514 780 151 17 0 chr4 38886902 38887021 -145401641 - AluJo SINE Alu -181 121 1 662 127 37 124 chr4 38887029 38887207 -145401455 - L1M3 LINE L1 -571 5600 5428 2048 208 30 40 chr4 38887218 38887690 -145400972 + MLT1C LTR MaLR 1 467 0 319 282 0 0 chr4 38887827 38887898 -145400764 - L2 LINE L2 -4 3309 3239 2228 101 3 0 chr4 38888705 38889002 -145399660 + AluSg SINE Alu 12 309 -1 332 218 11 0 chr4 38889176 38889263 -145399399 + GA-rich Low_complexity Low_complexity 4 91 0 236 214 0 18 chr4 38889887 38889943 -145398719 + U8 snRNA snRNA 22 76 -60 313 284 116 7 chr4 38889983 38890138 -145398524 + MIR SINE MIR 70 241 -21 253 355 40 24 chr4 38890251 38890375 -145398287 - MIR SINE MIR -133 129 4 1585 224 176 10 chr4 38890401 38890963 -145397699 - LTR50 LTR ERVL -2 793 87 215 348 96 15 chr4 38891125 38891260 -145397402 + L2 LINE L2 3127 3272 0 320 279 23 23 chr4 38891772 38891858 -145396804 - MIR3 SINE MIR -19 189 104 2238 115 0 0 chr4 38891960 38892255 -145396407 - AluSx SINE Alu -17 295 1 22 0 0 0 chr4 38892348 38892370 -145396292 + AT_rich Low_complexity Low_complexity 1 22 0 584 279 81 34 chr4 38893197 38893520 -145395142 - L1ME LINE L1 -399 5722 5385 250 276 184 20 chr4 38893525 38893623 -145395039 + L2 LINE L2 3195 3308 -5 191 378 0 0 chr4 38893854 38893928 -145394734 + MIR SINE MIR 49 122 -140 219 228 18 0 chr4 38895622 38895672 -145392990 + (CA)n Simple_repeat Simple_repeat 1 54 -4 2604 152 21 39 chr4 38895672 38895725 -145392937 + MSTC LTR MaLR 3 55 -373 2318 89 3 13 chr4 38895725 38896039 -145392623 + AluY SINE Alu 1 311 0 2604 152 21 39 chr4 38896039 38896419 -145392243 + MSTC LTR MaLR 55 428 0 219 228 18 0 chr4 38896419 38896425 -145392237 + (CA)n Simple_repeat Simple_repeat 54 58 0 189 338 8 113 chr4 38896579 38896641 -145392021 - MIR SINE MIR -141 121 79 1669 145 0 0 chr4 38896641 38896883 -145391779 - AluJb SINE Alu -22 290 49 189 338 8 113 chr4 38896883 38896953 -145391709 - MIR SINE MIR -183 79 3 1623 239 77 78 chr4 38897235 38897667 -145390995 + L1ME2 LINE L1 3226 3658 -2488 1815 151 7 26 chr4 38897667 38897972 -145390690 + AluJb SINE Alu 1 299 -13 1623 239 77 78 chr4 38897972 38898402 -145390260 + L1ME2 LINE L1 3658 4087 -2059 767 142 49 120 chr4 38898405 38898552 -145390110 - AluSg/x SINE Alu -22 290 157 4850 160 64 60 chr4 38898552 38899619 -145389043 - MER11C LTR ERVK 0 1071 1 767 142 49 120 chr4 38899619 38899654 -145389008 - AluSg/x SINE Alu -155 157 121 851 141 7 30 chr4 38899655 38899790 -145388872 - FLAM_C SINE Alu 0 133 2 2249 242 46 36 chr4 38899810 38900619 -145388043 + L1ME2 LINE L1 4112 4928 -1218 245 217 72 105 chr4 38900636 38900788 -145387874 + L1ME2 LINE L1 5160 5306 -840 1976 67 0 52 chr4 38900788 38901058 -145387604 + MER1A DNA MER1_type 136 391 -138 298 71 0 0 chr4 38901055 38901097 -145387565 - Charlie3 DNA MER1_type -92 2618 2577 * 269 105 26 0 chr4 38901105 38901143 -145387519 + Charlie3 DNA MER1_type 2664 2702 -8 1832 196 36 60 chr4 38901153 38901657 -145387005 + L1ME2 LINE L1 5650 6141 -23 1567 116 0 0 chr4 38902107 38902314 -145386348 - AluSg/x SINE Alu -12 298 92 266 236 42 29 chr4 38902876 38902981 -145385681 - MIR SINE MIR -71 137 43 856 149 0 154 chr4 38903365 38903573 -145385089 + MER5B DNA MER1_type 2 177 -1 321 297 7 11 chr4 38903629 38903769 -145384893 - MIR SINE MIR -48 214 19 189 229 229 0 chr4 38903808 38903869 -145384793 + MIR SINE MIR 165 239 -23 2345 71 10 3 chr4 38904043 38904340 -145384322 - AluY SINE Alu -12 299 1 552 42 0 0 chr4 38904593 38904664 -145383998 + (TCCA)n Simple_repeat Simple_repeat 4 74 0 230 182 18 55 chr4 38904933 38904988 -145383674 - MIR SINE MIR -189 73 21 318 252 34 5 chr4 38905258 38905403 -145383259 - MIR SINE MIR -17 245 21 2584 138 59 5 chr4 38905580 38905986 -145382676 - MSTA LTR MaLR 0 428 1 9707 165 43 11 chr4 38905986 38906173 -145382489 - MSTA-int LTR MaLR 0 1651 1471 2151 122 0 13 chr4 38906173 38906477 -145382185 + AluSg SINE Alu 1 300 -10 9707 165 43 11 chr4 38906477 38907889 -145380773 - MSTA-int LTR MaLR -180 1471 1 2657 150 41 5 chr4 38907889 38908302 -145380360 - MSTA LTR MaLR 0 428 1 483 275 67 96 chr4 38908411 38908609 -145380053 - MLT1J1 LTR MaLR 0 446 244 2204 145 85 18 chr4 38908609 38909010 -145379652 - MSTA LTR MaLR 0 428 1 483 275 67 96 chr4 38909010 38909229 -145379433 - MLT1J1 LTR MaLR -202 244 41 248 315 33 0 chr4 38909397 38909489 -145379173 - MIR SINE MIR 0 262 168 621 288 7 0 chr4 38909580 38909719 -145378943 + LTR33 LTR ERVL 26 165 -356 505 302 31 9 chr4 38909794 38910019 -145378643 + LTR33 LTR ERVL 292 521 0 440 256 130 72 chr4 38910094 38910301 -145378361 + MIR SINE MIR 30 248 -14 2363 111 60 20 chr4 38910336 38910686 -145377976 + THE1B LTR MaLR 1 364 0 22 35 0 0 chr4 38910695 38910724 -145377938 + AT_rich Low_complexity Low_complexity 1 29 0 904 254 61 20 chr4 38910763 38911058 -145377604 + L1ME4a LINE L1 5490 5796 -325 375 281 125 27 chr4 38911079 38911303 -145377359 + L1ME4a LINE L1 5847 6092 -29 957 81 16 0 chr4 38911663 38911786 -145376876 + AluSg/x SINE Alu 174 298 -12 188 301 41 14 chr4 38912247 38912320 -145376342 + MIR SINE MIR 34 108 -154 3136 219 29 38 chr4 38912422 38913229 -145375433 + L1ME1 LINE L1 5363 6161 -5 201 307 0 34 chr4 38913312 38913400 -145375262 + CT-rich Low_complexity Low_complexity 3 87 0 393 329 79 30 chr4 38913460 38913624 -145375038 + L3 LINE CR1 1362 1533 -44 8149 28 3 0 chr4 38914289 38915403 -145373259 - L1PA3 LINE L1 0 6155 5041 30865 123 10 55 chr4 38915436 38921911 -145366751 + L1PA8 LINE L1 2 6171 -1 522 251 29 82 chr4 38921960 38921996 -145366666 - MIR SINE MIR -10 252 216 1776 175 11 118 chr4 38921996 38922460 -145366202 + MLT2D LTR ERVL 1 414 0 522 251 29 82 chr4 38922460 38922630 -145366032 - MIR SINE MIR -46 216 57 271 261 102 64 chr4 38922773 38922930 -145365732 + MIR SINE MIR 28 190 -72 1520 183 95 9 chr4 38923097 38923414 -145365248 - MLT1B LTR MaLR 0 390 47 198 267 100 0 chr4 38923704 38923764 -145364898 - L2 LINE L2 -228 3044 2979 543 240 8 0 chr4 38924171 38924292 -145364370 + Charlie8 DNA MER1_type 103 224 -2193 783 243 85 0 chr4 38924307 38924496 -145364166 - MER3 DNA MER1_type -4 205 1 237 33 0 0 chr4 38924692 38924722 -145363940 + (TG)n Simple_repeat Simple_repeat 2 31 0 327 78 0 0 chr4 38925167 38925218 -145363444 + (CA)n Simple_repeat Simple_repeat 2 52 0 214 280 93 5 chr4 38925867 38925990 -145362672 + MIR SINE MIR 19 160 -48 533 151 0 0 chr4 38926099 38926172 -145362490 + AluJ/FLAM SINE Alu 2 74 -238 261 0 0 0 chr4 38926195 38926224 -145362438 + (GAA)n Simple_repeat Simple_repeat 2 30 0 264 59 0 0 chr4 38926300 38926334 -145362328 + (A)n Simple_repeat Simple_repeat 1 34 0 264 256 12 37 chr4 38926343 38926425 -145362237 - MER5A DNA MER1_type 0 189 110 594 275 82 37 chr4 38926719 38926963 -145361699 + MER112 DNA MER1_type 2 256 0 675 278 9 54 chr4 38927718 38927941 -145360721 + MIR SINE MIR 28 240 -22 197 328 0 17 chr4 38927907 38927965 -145360697 + L2 LINE L2 3212 3268 -4 * 241 324 19 9 chr4 38928656 38928764 -145359898 + (TATG)n Simple_repeat Simple_repeat 4 112 0 1975 72 68 8 chr4 38929431 38929695 -145358967 + AluSp SINE Alu 6 285 -28 792 277 50 4 chr4 38929909 38930151 -145358511 + MIR SINE MIR 10 262 0 2375 145 45 5 chr4 38930182 38930582 -145358080 - MSTA LTR MaLR -1 427 12 224 170 21 0 chr4 38930583 38930630 -145358032 + (TTA)n Simple_repeat Simple_repeat 3 50 0 1127 191 30 0 chr4 38930931 38931130 -145357532 - MER3 DNA MER1_type -4 205 1 634 272 6 12 chr4 38931444 38931617 -145357045 + MER112 DNA MER1_type 4 175 -85 2317 136 19 32 chr4 38931656 38932025 -145356637 - THE1B LTR MaLR 0 364 1 12574 88 11 1 chr4 38932025 38933590 -145355072 - THE1B-int LTR MaLR 0 1580 1 2547 106 19 32 chr4 38933590 38933959 -145354703 - THE1B LTR MaLR 0 364 1 298 176 81 27 chr4 38933959 38934033 -145354629 + MER112 DNA MER1_type 183 260 0 879 264 63 21 chr4 38934037 38934321 -145354341 - MER102a DNA MER1_type -2 328 33 519 169 8 85 chr4 38934934 38935064 -145353598 - L1MD3 LINE L1 0 7995 7876 1041 218 0 36 chr4 38935066 38935286 -145353376 - MSTD LTR MaLR -1 395 184 2176 126 0 0 chr4 38935286 38935596 -145353066 - AluY SINE Alu -1 310 1 865 166 0 21 chr4 38935599 38935744 -145352918 - AluJo SINE Alu -170 142 1 1118 152 27 0 chr4 38935745 38935929 -145352733 - MSTD LTR MaLR -205 191 3 657 192 26 51 chr4 38935931 38936087 -145352575 - L1MD3 LINE L1 -116 7879 7728 192 308 0 0 chr4 38936310 38936362 -145352300 + L2 LINE L2 3254 3305 -8 2117 184 26 3 chr4 38936502 38936883 -145351779 - MLT1B LTR MaLR 0 390 1 658 314 31 23 chr4 38937316 38937666 -145350996 + MLT1F-int LTR MaLR 248 600 -771 682 290 59 108 chr4 38937873 38938580 -145350082 + MLT1F-int LTR MaLR 699 1371 0 511 291 29 23 chr4 38938581 38938753 -145349909 + MLT1F LTR MaLR 2 174 -368 10629 42 2 13 chr4 38938753 38940250 -145348412 + L1P2 LINE L1 4085 5565 -590 3388 243 38 30 chr4 38940555 38941090 -145347572 - MER21B LTR ERV1 -4 859 313 2255 88 3 36 chr4 38941090 38941395 -145347267 - AluY SINE Alu -16 295 1 3388 243 38 30 chr4 38941395 38941669 -145346993 - MER21B LTR ERV1 -550 313 43 345 291 0 0 chr4 38941667 38941746 -145346916 - MER21B LTR ERV1 -769 94 16 * 261 278 78 33 chr4 38941743 38941833 -145346829 - MER21B LTR ERV1 -758 105 12 * 5489 229 83 51 chr4 38942125 38943786 -145344876 + L1M3e LINE L1 7 1612 -5494 201 39 0 0 chr4 38943786 38943812 -145344850 + (CAA)n Simple_repeat Simple_repeat 1 26 0 5489 229 83 51 chr4 38943812 38945997 -145342665 + L1M3e LINE L1 1612 4783 -2323 1216 243 44 53 chr4 38945997 38946546 -145342116 - MER39 LTR ERV1 0 648 1 2294 181 38 15 chr4 38946546 38947022 -145341640 + L1M3e LINE L1 4780 5266 -1840 410 177 156 10 chr4 38947067 38947163 -145341499 - MER52A LTR ERV1 -743 1012 903 3062 220 173 42 chr4 38947165 38948142 -145340520 - MER52A LTR ERV1 -650 1105 1 2424 120 18 23 chr4 38948142 38948534 -145340128 + L1MA9 LINE L1 5914 6303 -9 5049 109 86 47 chr4 38948863 38949654 -145339008 + LTR12 LTR ERV1 5 826 0 2368 83 0 13 chr4 38949738 38950039 -145338623 - AluY SINE Alu -14 297 1 2155 110 0 38 chr4 38950246 38950563 -145338099 + AluSx SINE Alu 1 305 -7 1364 145 8 2 chr4 38951393 38951649 -145337013 + AluJo SINE Alu 1 300 -12 722 260 12 85 chr4 38952405 38952663 -145335999 - MIR SINE MIR -21 241 3 1853 213 83 120 chr4 38952763 38952972 -145335690 - L1MC5 LINE L1 -61 7900 7685 296 105 0 0 chr4 38952972 38953010 -145335652 - U2 snRNA snRNA -150 38 1 1853 213 83 120 chr4 38953010 38953820 -145334842 - L1MC5 LINE L1 -276 7685 6883 777 253 23 32 chr4 38953989 38954210 -145334452 + MIR SINE MIR 41 259 -3 345 275 57 82 chr4 38954271 38954587 -145334075 - L1ME4a LINE L1 -193 5928 5621 186 133 0 0 chr4 38954864 38954894 -145333768 + (A)n Simple_repeat Simple_repeat 1 30 0 219 300 67 33 chr4 38955077 38955167 -145333495 + MER91A DNA MER1_type 48 140 -56 201 213 49 98 chr4 38955197 38955258 -145333404 + MER91A DNA MER1_type 126 183 -13 314 279 163 58 chr4 38955536 38955726 -145332936 + MIR SINE MIR 5 214 -48 1353 225 64 89 chr4 38956553 38957224 -145331438 + L1MC5 LINE L1 7277 7930 -31 343 296 178 0 chr4 38957286 38957421 -145331241 + MIR SINE MIR 104 262 0 265 267 178 0 chr4 38957876 38957977 -145330685 + MIR SINE MIR 36 154 -108 647 271 168 19 chr4 38957999 38958213 -145330449 + MIR SINE MIR 17 262 0 274 343 29 9 chr4 38959387 38959492 -145329170 + MIR SINE MIR 37 143 -65 186 133 0 0 chr4 38959798 38959828 -145328834 + (T)n Simple_repeat Simple_repeat 1 30 0 626 301 92 19 chr4 38960558 38960764 -145327898 - MIR SINE MIR -9 253 33 732 246 116 54 chr4 38961102 38961525 -145327137 - L1MC4 LINE L1 0 8042 7594 799 267 44 24 chr4 38961834 38962085 -145326577 + MIR SINE MIR 6 261 -1 231 268 49 12 chr4 38962503 38962585 -145326077 - L2 LINE L2 -2 3311 3227 3811 135 25 22 chr4 38962766 38963365 -145325297 + MER7C DNA MER2_type 1 601 -1 1987 123 0 46 chr4 38963431 38963755 -145324907 + AluSx SINE Alu 1 309 -3 480 242 17 0 chr4 38963851 38963971 -145324691 + MIR SINE MIR 105 226 -36 1448 226 33 9 chr4 38964292 38964629 -145324033 + LTR40b LTR ERVL 1 345 -117 195 250 21 0 chr4 38965083 38965131 -145323531 + L2 LINE L2 3201 3249 -23 304 285 139 30 chr4 38965836 38966001 -145322661 - L1ME4a LINE L1 -4 6117 5935 899 161 19 37 chr4 38966158 38966320 -145322342 - FRAM SINE Alu -14 162 4 667 261 16 96 chr4 38966330 38966460 -145322202 - L1ME4a LINE L1 -295 5826 5687 4944 131 7 4 chr4 38966460 38967195 -145321467 + L1PB4 LINE L1 5415 6151 -5 667 261 16 96 chr4 38967195 38967386 -145321276 - L1ME4a LINE L1 -434 5687 5531 960 217 74 57 chr4 38967715 38968128 -145320534 - MLT1E LTR MaLR -17 576 55 2343 64 0 3 chr4 38968128 38968446 -145320216 + AluY SINE Alu 1 317 0 960 217 74 57 chr4 38968446 38968502 -145320160 - MLT1E LTR MaLR -538 55 1 1565 175 113 64 chr4 38970003 38970438 -145318224 - MLT1C LTR MaLR -6 461 6 788 195 0 38 chr4 38972024 38972183 -145316479 + MER3 DNA MER1_type 28 180 -29 1501 167 0 44 chr4 38972183 38972458 -145316204 + AluJo SINE Alu 1 263 -49 244 133 44 0 chr4 38972542 38972587 -145316075 + MER3 DNA MER1_type 163 209 0 195 42 0 0 chr4 38972670 38972694 -145315968 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1677 176 15 4 chr4 38972706 38972978 -145315684 - AluJb SINE Alu -37 275 1 1301 201 88 64 chr4 38972978 38973385 -145315277 - Charlie4a DNA MER1_type -70 438 22 1094 283 164 36 chr4 38973459 38974493 -145314169 - L2 LINE L2 -1 3312 2127 281 253 0 55 chr4 38974735 38974826 -145313836 + LTR67 LTR ERVL 5 90 -467 500 213 55 24 chr4 38974858 38974973 -145313689 + LTR67 LTR ERVL 396 514 -43 712 311 65 34 chr4 38974973 38975356 -145313306 - LTR16A LTR ERVL 0 450 56 198 306 32 0 chr4 38975387 38975449 -145313213 - MIR3 SINE MIR -34 174 111 1467 106 101 5 chr4 38975469 38975676 -145312986 - MER30 DNA MER1_type 0 230 4 2233 128 0 3 chr4 38977867 38978226 -145310436 - AluSx SINE Alu 0 358 1 451 236 113 84 chr4 38978478 38978681 -145309981 - LTR48 LTR ERV1 0 787 387 758 226 132 24 chr4 38978712 38979250 -145309412 - LTR48 LTR ERV1 -36 737 1 337 263 115 32 chr4 38979250 38979406 -145309256 + MIR SINE MIR 52 220 -42 1049 168 6 28 chr4 38979722 38979901 -145308761 - FAM SINE Alu 0 175 1 2708 162 0 36 chr4 38980246 38980685 -145307977 - MSTC LTR MaLR -4 424 2 216 0 0 0 chr4 38980722 38980746 -145307916 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2044 131 0 0 chr4 38980748 38981030 -145307632 - AluSx SINE Alu -30 282 1 258 32 0 0 chr4 38983336 38983367 -145305295 + (TG)n Simple_repeat Simple_repeat 1 31 0 921 225 26 4 chr4 38983406 38983633 -145305029 + MER97a DNA MER1_type? 59 290 -604 922 170 28 142 chr4 38984432 38984578 -145304084 + MER58A DNA MER1_type 1 107 -2313 2267 103 3 3 chr4 38984578 38984878 -145303784 - AluSx SINE Alu -12 300 1 922 170 28 142 chr4 38984878 38984984 -145303678 + MER58A DNA MER1_type 107 224 0 203 184 0 0 chr4 38985377 38985415 -145303247 + A-rich Low_complexity Low_complexity 1 38 0 661 180 189 69 chr4 38985821 38985959 -145302703 + MIR SINE MIR 6 126 -136 1989 107 11 4 chr4 38985959 38986240 -145302422 + AluSx SINE Alu 1 282 -30 235 0 0 0 chr4 38986240 38986266 -145302396 + (TAA)n Simple_repeat Simple_repeat 2 180 0 661 180 189 69 chr4 38986266 38986342 -145302320 + MIR SINE MIR 126 248 -14 189 147 0 0 chr4 38986403 38986437 -145302225 + (CATTA)n Simple_repeat Simple_repeat 5 38 0 912 235 154 10 chr4 38986621 38986932 -145301730 - MLT1C LTR MaLR 0 467 112 4484 138 30 6 chr4 38986935 38987729 -145300933 - L1PA16 LINE L1 -95 6071 5259 35 54 0 0 chr4 39041344 39041400 -145247262 + AT_rich Low_complexity Low_complexity 1 56 0 620 261 63 4 chr4 39041456 39041709 -145246953 + Charlie2 DNA MER1_type 2222 2489 -373 1069 131 0 12 chr4 39041710 39041870 -145246792 + AluSx SINE Alu 1 158 -154 498 114 0 0 chr4 39041871 39041950 -145246712 + AluSc SINE Alu 231 309 0 1302 246 16 8 chr4 39041964 39042338 -145246324 + Charlie2 DNA MER1_type 2486 2862 0 211 256 39 39 chr4 39042360 39042438 -145246224 - MER5B DNA MER1_type -96 82 5 2299 131 56 8 chr4 39042651 39043009 -145245653 + THE1C LTR MaLR 1 375 0 2628 186 15 6 chr4 39043264 39043791 -145244871 + L1 LINE L1 4858 5389 -757 1921 96 4 15 chr4 39043891 39044187 -145244475 + AluY SINE Alu 16 308 0 2047 166 32 56 chr4 39044659 39045033 -145243629 + MLT1A1 LTR MaLR 1 365 0 713 194 26 99 chr4 39045661 39045746 -145242916 - MER45A DNA AcHobo -1404 177 112 2244 115 0 3 chr4 39045746 39046059 -145242603 + AluSx SINE Alu 1 312 0 713 194 26 99 chr4 39046059 39046164 -145242498 - MER45A DNA AcHobo -1469 112 1 429 350 75 31 chr4 39046184 39046570 -145242092 - L2 LINE L2 -57 3215 2813 476 271 101 29 chr4 39048049 39048256 -145240406 + MIR SINE MIR 31 252 -10 290 257 0 14 chr4 39048459 39048529 -145240133 + Tigger6a DNA MER2_type 5 73 -1010 5056 173 31 40 chr4 39048686 39049045 -145239617 + Tigger6a DNA MER2_type 85 446 -1151 1173 199 82 69 chr4 39049045 39049336 -145239326 - AluJo SINE Alu -6 296 2 5056 173 31 40 chr4 39049336 39049851 -145238811 + Tigger6a DNA MER2_type 446 951 -646 1627 179 42 3 chr4 39049851 39050136 -145238526 - AluJo SINE Alu -16 296 1 5056 173 31 40 chr4 39050136 39050267 -145238395 + Tigger6a DNA MER2_type 951 1082 -1 926 174 64 55 chr4 39050722 39050941 -145237721 - AluSg/x SINE Alu -1 311 91 1809 124 35 0 chr4 39051049 39051306 -145237356 + AluSg1 SINE Alu 35 300 -9 197 309 181 0 chr4 39051318 39051412 -145237250 - L3b LINE CR1 -37 1546 1436 279 296 41 20 chr4 39051435 39051533 -145237129 - L2 LINE L2 -33 3280 3181 454 274 95 12 chr4 39051571 39051739 -145236923 - MIR SINE MIR -41 221 40 614 265 148 22 chr4 39051739 39051962 -145236700 + MIR SINE MIR 12 262 0 2494 87 3 0 chr4 39052482 39052794 -145235868 - AluSp SINE Alu 0 313 1 2122 128 80 80 chr4 39053297 39053398 -145235264 + MLT1B LTR MaLR 1 101 -289 2223 122 0 0 chr4 39053398 39053694 -145234968 + AluSc SINE Alu 1 296 -13 2122 128 80 80 chr4 39053694 39053982 -145234680 + MLT1B LTR MaLR 100 390 0 1432 234 63 52 chr4 39055636 39056188 -145232474 - L1M4 LINE L1 -3457 2689 2132 1831 142 10 23 chr4 39056406 39056716 -145231946 + AluJo SINE Alu 1 306 -6 856 202 21 21 chr4 39057271 39057459 -145231203 - MSTB LTR MaLR -48 378 191 1801 65 0 0 chr4 39057462 39057679 -145230983 - L1PA8 LINE L1 0 6172 5956 235 234 252 19 chr4 39057716 39057823 -145230839 - MIR3 SINE MIR -28 180 49 687 209 105 0 chr4 39058153 39058306 -145230356 + MER3 DNA MER1_type 1 122 -87 1972 158 54 36 chr4 39059222 39059767 -145228895 + MLT2A2 LTR ERVL 1 554 0 232 296 157 17 chr4 39060412 39060527 -145228135 + MIR3 SINE MIR 30 160 -48 2426 110 27 0 chr4 39060630 39060967 -145227695 - THE1B LTR MaLR 0 364 19 500 254 146 18 chr4 39061214 39061494 -145227168 + L1ME4a LINE L1 5767 6082 -39 184 289 168 54 chr4 39061817 39061966 -145226696 - L2 LINE L2 -99 3173 3008 1665 178 43 65 chr4 39062427 39062825 -145225837 + MLT1C LTR MaLR 66 454 -13 26 0 0 0 chr4 39063303 39063329 -145225333 + AT_rich Low_complexity Low_complexity 1 26 0 2233 160 9 98 chr4 39063356 39063807 -145224855 - MLT2D LTR ERVL -1 413 3 3777 138 8 7 chr4 39063833 39064422 -145224240 - L1MB3 LINE L1 -1 6182 5593 2162 106 0 3 chr4 39064466 39064779 -145223883 + AluSq SINE Alu 1 312 0 709 281 115 66 chr4 39064901 39065413 -145223249 + MLT1L LTR MaLR 8 544 -71 399 256 41 16 chr4 39065527 39065648 -145223014 - LTR67 LTR ERVL 0 557 434 689 163 22 114 chr4 39065862 39065917 -145222745 - MER96 DNA MER1_type? -8 167 109 2508 81 0 3 chr4 39065917 39066227 -145222435 + AluY SINE Alu 1 309 -2 689 163 22 114 chr4 39066227 39066355 -145222307 - MER96 DNA MER1_type? -66 109 1 563 299 104 43 chr4 39069212 39069557 -145219105 + MLT1L LTR MaLR 246 611 -4 926 215 62 5 chr4 39069567 39069776 -145218886 + MLT1H LTR MaLR 14 234 -315 435 119 0 0 chr4 39070089 39070156 -145218506 + (GGGA)n Simple_repeat Simple_repeat 4 70 0 181 200 0 0 chr4 39070510 39070540 -145218122 + L2 LINE L2 3264 3293 -20 1641 96 55 0 chr4 39071249 39071467 -145217195 - MER30 DNA MER1_type 0 230 1 519 192 56 0 chr4 39071607 39071732 -145216930 - MIR SINE MIR -49 213 82 1100 276 64 34 chr4 39071743 39072182 -145216480 + MLT1J LTR MaLR 53 504 -7 721 219 7 7 chr4 39072607 39072744 -145215918 + MLT1J LTR MaLR 47 183 -328 188 316 184 30 chr4 39073050 39073218 -145215444 + MIR SINE MIR 57 250 -12 216 307 9 97 chr4 39073505 39073619 -145215043 + L2 LINE L2 3169 3272 0 453 283 86 20 chr4 39074005 39074157 -145214505 + MIR SINE MIR 97 258 -4 1232 160 0 62 chr4 39075061 39075286 -145213376 + AluJo SINE Alu 85 295 -17 819 86 0 0 chr4 39075470 39075575 -145213087 - AluSp SINE Alu -208 105 1 1966 136 3 23 chr4 39076821 39077130 -145211532 - AluSq SINE Alu -10 303 1 957 171 34 49 chr4 39077518 39077723 -145210939 + MER20 DNA MER1_type 18 219 0 294 247 69 81 chr4 39077723 39077897 -145210765 + HAL1 LINE L1 22 193 -2314 1984 256 166 50 chr4 39078164 39079311 -145209351 + HAL1 LINE L1 202 1481 -1026 425 321 67 35 chr4 39079328 39079523 -145209139 + L1MCc LINE L1 17 204 -6219 1586 192 97 32 chr4 39079523 39079862 -145208800 - MLT1A1 LTR MaLR 0 365 5 425 321 67 35 chr4 39079862 39080117 -145208545 + L1MCc LINE L1 204 481 -5942 342 0 0 0 chr4 39080600 39080638 -145208024 + (CA)n Simple_repeat Simple_repeat 2 39 0 692 207 0 90 chr4 39081223 39081348 -145207314 - MER5B DNA MER1_type -5 173 69 2034 130 10 3 chr4 39081348 39081640 -145207022 - AluSx SINE Alu -18 294 1 692 207 0 90 chr4 39081640 39081702 -145206960 - MER5B DNA MER1_type -109 69 3 451 294 114 35 chr4 39082642 39082870 -145205792 - MIR SINE MIR 0 262 17 4843 180 24 33 chr4 39083491 39083947 -145204715 + L1MC3 LINE L1 6804 7263 -522 2336 115 72 26 chr4 39083947 39084294 -145204368 + THE1B LTR MaLR 1 363 -1 4843 180 24 33 chr4 39084294 39084828 -145203834 + L1MC3 LINE L1 7263 7785 0 1854 154 76 60 chr4 39084881 39085263 -145203399 + MLT1B LTR MaLR 1 388 -2 2407 77 3 3 chr4 39085620 39085918 -145202744 + AluY SINE Alu 1 298 -13 897 173 0 0 chr4 39086077 39086210 -145202452 - FLAM_C SINE Alu 0 133 1 226 360 0 0 chr4 39087173 39087248 -145201414 + CT-rich Low_complexity Low_complexity 3 77 0 2110 126 10 0 chr4 39087907 39088201 -145200461 + AluSx SINE Alu 1 297 -15 347 244 157 0 chr4 39088374 39088489 -145200173 + MIR SINE MIR 127 259 -3 328 247 97 0 chr4 39089192 39089285 -145199377 + MIR SINE MIR 85 186 -76 291 340 61 14 chr4 39089424 39089571 -145199091 + L2 LINE L2 3117 3270 -2 326 349 163 0 chr4 39089984 39090156 -145198506 - L2 LINE L2 -1 3271 3072 2239 80 0 14 chr4 39090374 39090686 -145197976 + AluY SINE Alu 1 308 0 2158 154 26 6 chr4 39092285 39092636 -145196026 + MLT1A1 LTR MaLR 1 358 -7 280 264 109 45 chr4 39093564 39093674 -145194988 + MLT1J LTR MaLR 382 498 -13 428 302 80 31 chr4 39093712 39093937 -145194725 + MIR SINE MIR 25 260 -2 2162 121 0 3 chr4 39094657 39094942 -145193720 + AluSx SINE Alu 1 286 -26 243 0 0 0 chr4 39094942 39094969 -145193693 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 2162 121 0 3 chr4 39094969 39094988 -145193674 + AluSx SINE Alu 286 304 -8 886 296 46 72 chr4 39095465 39095655 -145193007 - MLT1K LTR MaLR -23 565 372 2205 115 0 3 chr4 39095655 39095960 -145192702 + AluSx SINE Alu 9 312 0 886 296 46 72 chr4 39095960 39096312 -145192350 - MLT1K LTR MaLR -216 372 37 362 276 20 53 chr4 39096647 39096747 -145191915 + MIR SINE MIR 3 98 -164 15669 119 33 7 chr4 39096747 39097868 -145190794 - Tigger1 DNA MER2_type -1 2417 1327 2114 103 7 7 chr4 39097868 39098160 -145190502 + AluSq SINE Alu 22 313 0 15669 119 33 7 chr4 39098160 39099394 -145189268 - Tigger1 DNA MER2_type -1091 1327 1 362 276 20 53 chr4 39099394 39099445 -145189217 + MIR SINE MIR 98 149 -113 2449 43 0 3 chr4 39099641 39099923 -145188739 - AluY SINE Alu -14 297 17 21 0 0 0 chr4 39100523 39100544 -145188118 + AT_rich Low_complexity Low_complexity 1 21 0 5985 92 9 11 chr4 39100562 39101428 -145187234 - L1MA2 LINE L1 0 6304 5441 428 71 0 0 chr4 39101524 39101580 -145187082 - L1MA2 LINE L1 -871 5431 5376 260 316 205 0 chr4 39101683 39101854 -145186808 - Charlie2 DNA MER1_type -2531 251 46 206 226 0 19 chr4 39101891 39101944 -145186718 - MER5B DNA MER1_type -126 52 1 472 304 46 59 chr4 39102415 39102978 -145185684 + L1MEd LINE L1 564 1119 -5000 187 270 7 124 chr4 39103255 39103356 -145185306 + L2 LINE L2 3152 3235 -78 2233 113 33 33 chr4 39103356 39103719 -145184943 + THE1B LTR MaLR 1 363 -1 187 270 7 124 chr4 39103719 39103754 -145184908 + L2 LINE L2 3235 3272 -41 509 297 67 33 chr4 39103840 39104140 -145184522 + HAL1 LINE L1 1416 1725 -782 228 178 22 0 chr4 39104759 39104804 -145183858 + CT-rich Low_complexity Low_complexity 2 47 0 308 322 70 72 chr4 39104879 39104913 -145183749 + L1ME4a LINE L1 5454 5487 -634 2089 116 19 26 chr4 39104913 39105224 -145183438 + AluSx SINE Alu 1 309 -3 308 322 70 72 chr4 39105224 39105645 -145183017 + L1ME4a LINE L1 5487 5908 -213 1878 129 51 46 chr4 39105773 39105940 -145182722 - THE1C LTR MaLR 0 375 210 210 37 0 0 chr4 39105940 39105967 -145182695 + (GA)n Simple_repeat Simple_repeat 1 27 0 2017 151 0 3 chr4 39105975 39106273 -145182389 + AluSx SINE Alu 3 299 -13 1878 129 51 46 chr4 39106273 39106469 -145182193 - THE1C LTR MaLR -171 204 1 8673 151 12 18 chr4 39107198 39108961 -145179701 - L1PB1 LINE L1 -5 6146 4399 234 0 0 0 chr4 39108961 39108987 -145179675 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 8673 151 12 18 chr4 39108987 39109805 -145178857 - L1PB1 LINE L1 -1752 4399 3577 691 223 90 67 chr4 39110070 39110571 -145178091 + MLT1G1 LTR MaLR 1 645 -9 257 272 43 75 chr4 39110580 39110885 -145177777 - L1MC5 LINE L1 -332 7629 7335 681 190 212 11 chr4 39110885 39111069 -145177593 - MER58A DNA MER1_type 0 224 4 280 265 54 121 chr4 39111092 39111631 -145177031 + HAL1 LINE L1 818 1320 -1187 1636 152 0 73 chr4 39111654 39111956 -145176706 - AluJo SINE Alu -20 292 13 242 310 82 29 chr4 39112751 39112922 -145175740 + MER5A DNA MER1_type 7 186 -3 484 220 7 50 chr4 39114131 39114239 -145174423 - MIR SINE MIR -60 202 100 2018 135 67 92 chr4 39114239 39114675 -145173987 + MSTA LTR MaLR 2 426 -2 484 220 7 50 chr4 39114675 39114707 -145173955 - MIR SINE MIR -162 100 68 407 259 110 53 chr4 39114717 39114945 -145173717 - MLT1K LTR MaLR -19 569 329 1599 228 97 14 chr4 39115528 39115999 -145172663 - LTR33A LTR ERVL -7 516 38 251 240 40 0 chr4 39116035 39116110 -145172552 - L1ME4a LINE L1 -11 6110 6033 2583 56 0 0 chr4 39117328 39117632 -145171030 - AluY SINE Alu -7 304 1 240 143 0 0 chr4 39118100 39118142 -145170520 + (TG)n Simple_repeat Simple_repeat 2 43 0 201 39 0 0 chr4 39118895 39118921 -145169741 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 183 42 0 0 chr4 39119300 39119324 -145169338 + (GA)n Simple_repeat Simple_repeat 1 24 0 227 257 59 40 chr4 39119879 39119980 -145168682 - L2 LINE L2 -1 3312 3210 211 341 16 40 chr4 39120043 39120169 -145168493 + MIR3 SINE MIR 75 197 -11 222 224 0 0 chr4 39121175 39121224 -145167438 - MIR SINE MIR -48 214 166 22 0 0 0 chr4 39121621 39121643 -145167019 + AT_rich Low_complexity Low_complexity 1 22 0 2310 105 0 16 chr4 39122228 39122534 -145166128 + AluSx SINE Alu 1 301 -11 285 261 65 11 chr4 39124166 39124258 -145164404 - L2 LINE L2 -5 3308 3212 26 30 0 0 chr4 39124648 39124681 -145163981 + AT_rich Low_complexity Low_complexity 1 33 0 375 269 129 90 chr4 39124850 39125229 -145163433 - MLT1K LTR MaLR -3 585 192 2367 67 3 3 chr4 39126148 39126447 -145162215 - AluY SINE Alu -12 299 1 243 0 0 0 chr4 39126731 39126758 -145161904 + (TATG)n Simple_repeat Simple_repeat 2 28 0 2009 105 84 7 chr4 39126826 39127112 -145161550 - AluSg SINE Alu -2 308 1 287 282 81 32 chr4 39127245 39127369 -145161293 - L2 LINE L2 -2 3270 3141 1821 139 0 8 chr4 39128284 39128550 -145160112 + AluSx SINE Alu 35 298 -14 1474 174 4 0 chr4 39128847 39129082 -145159580 + AluSx SINE Alu 1 236 -76 873 296 84 74 chr4 39129235 39129302 -145159360 + L2 LINE L2 2357 2422 -891 2163 129 0 0 chr4 39129302 39129597 -145159065 + AluSc SINE Alu 1 295 -14 873 296 84 74 chr4 39129597 39130346 -145158316 + L2 LINE L2 2422 3190 -123 1878 169 42 89 chr4 39130346 39130542 -145158120 - MLT1D LTR MaLR -1 504 300 2060 154 0 7 chr4 39130542 39130848 -145157814 - AluSx SINE Alu -8 304 1 1878 169 42 89 chr4 39130848 39131179 -145157483 - MLT1D LTR MaLR -205 300 2 873 296 84 74 chr4 39131179 39131254 -145157408 + L2 LINE L2 3190 3263 -50 904 241 5 5 chr4 39131309 39131525 -145157137 - MIR SINE MIR -42 220 5 314 107 18 0 chr4 39132546 39132602 -145156060 + (TC)n Simple_repeat Simple_repeat 2 58 0 375 263 79 0 chr4 39132821 39132935 -145155727 + MIR SINE MIR 45 167 -95 392 269 56 0 chr4 39132941 39133049 -145155613 - L2 LINE L2 -22 3291 3178 582 226 17 0 chr4 39133132 39133247 -145155415 + MLT1F LTR MaLR 1 117 -425 1531 208 77 51 chr4 39133412 39133840 -145154822 + MLT1F LTR MaLR 104 542 0 291 286 24 32 chr4 39134014 39134140 -145154522 - MIR3 SINE MIR -54 154 30 188 410 10 0 chr4 39134871 39134971 -145153691 + L2 LINE L2 2715 2815 -499 696 235 71 20 chr4 39134971 39135167 -145153495 + MIR SINE MIR 45 250 -12 1190 247 97 43 chr4 39135497 39135962 -145152700 - MLT1H1 LTR MaLR 0 555 66 327 175 105 88 chr4 39136016 39136130 -145152532 + L2 LINE L2 3193 3308 -5 267 315 219 14 chr4 39137379 39137812 -145150850 - L2 LINE L2 -11 3302 2767 2361 96 3 6 chr4 39137848 39138161 -145150501 - AluSx SINE Alu 0 312 1 970 206 16 16 chr4 39138223 39138412 -145150250 + MER5A DNA MER1_type 1 189 0 1565 229 131 25 chr4 39138918 39139408 -145149254 - MLT1F LTR MaLR 0 542 1 382 225 84 58 chr4 39139482 39139532 -145149130 - L2 LINE L2 -42 3271 3224 2429 72 0 10 chr4 39139532 39139838 -145148824 + AluY SINE Alu 1 303 -8 382 225 84 58 chr4 39139838 39139978 -145148684 - L2 LINE L2 -89 3224 3076 1642 227 130 53 chr4 39140039 39140406 -145148256 - Charlie7 DNA MER1_type -1 2611 2274 2291 96 13 0 chr4 39140406 39140708 -145147954 - AluSc SINE Alu -3 306 1 1642 227 130 53 chr4 39140708 39141146 -145147516 - Charlie7 DNA MER1_type -338 2274 1744 438 275 99 30 chr4 39141143 39141376 -145147286 - Charlie7 DNA MER1_type -2018 594 346 * 2204 122 13 3 chr4 39141612 39141916 -145146746 - AluSx SINE Alu 0 312 6 239 275 101 0 chr4 39142151 39142220 -145146442 + L1ME LINE L1 639 714 -5491 559 163 143 41 chr4 39142694 39142890 -145145772 - MER5C DNA MER1_type -54 270 55 563 281 29 25 chr4 39143041 39143322 -145145340 + L1ME LINE L1 1415 1696 -4700 481 243 57 29 chr4 39143651 39143861 -145144801 + L1ME LINE L1 2134 2349 -4047 289 306 45 8 chr4 39143897 39144031 -145144631 + L1ME LINE L1 2408 2546 -3669 1245 213 72 35 chr4 39144053 39144486 -145144176 + L1ME LINE L1 2637 3085 -3130 930 204 70 12 chr4 39144502 39144758 -145143904 + L1ME LINE L1 5410 5678 -553 1795 155 41 33 chr4 39145047 39145409 -145143253 - MLT1A1 LTR MaLR 0 365 1 271 305 29 9 chr4 39145432 39145537 -145143125 + MIR SINE MIR 19 125 -137 261 323 57 16 chr4 39146069 39146193 -145142469 + L2 LINE L2 3144 3272 0 1924 146 3 3 chr4 39146512 39146806 -145141856 - AluJb SINE Alu -18 294 1 330 306 46 56 chr4 39147109 39147375 -145141287 + HERV16 LTR ERVL 1056 1445 -3798 1330 266 53 36 chr4 39147721 39147793 -145140869 + HERV16 LTR ERVL 2855 2924 -2730 2085 103 0 43 chr4 39147793 39148117 -145140545 + AluSg SINE Alu 1 310 0 1330 266 53 36 chr4 39148117 39148518 -145140144 + HERV16 LTR ERVL 2924 3336 -2318 2746 265 127 25 chr4 39148520 39149891 -145138771 + L2 LINE L2 1724 3313 0 4005 168 16 48 chr4 39151062 39151873 -145136789 - LTR1 LTR ERV1 0 785 1 385 294 14 14 chr4 39151942 39152088 -145136574 - MIR3 SINE MIR -46 162 17 2205 123 0 3 chr4 39152794 39153095 -145135567 + AluSx SINE Alu 1 300 -12 539 282 51 0 chr4 39153095 39153251 -145135411 + MIR SINE MIR 29 192 -70 1841 5 5 0 chr4 39153260 39153458 -145135204 + AluYa5 SINE Alu 111 309 -2 590 244 118 39 chr4 39153930 39154159 -145134503 + MIR SINE MIR 16 262 0 1558 168 7 50 chr4 39154709 39155006 -145133656 + AluJb SINE Alu 1 284 -28 2124 97 0 7 chr4 39156424 39156763 -145131899 - AluSg SINE Alu 0 340 4 559 202 53 0 chr4 39156763 39156877 -145131785 - MIR SINE MIR -92 170 51 337 290 39 7 chr4 39159244 39159401 -145129261 - L1ME2 LINE L1 -278 5886 5721 2306 103 7 0 chr4 39159667 39159968 -145128694 + AluSp SINE Alu 1 303 -10 1801 125 4 0 chr4 39160100 39160356 -145128306 - AluSx SINE Alu -2 310 54 2265 95 20 0 chr4 39160679 39160974 -145127688 - AluSx SINE Alu -10 302 2 359 248 70 0 chr4 39160999 39161128 -145127534 - L1ME4a LINE L1 -2 6119 5982 206 188 0 21 chr4 39161666 39161714 -145126948 + L2 LINE L2 2716 2762 -552 2057 120 11 11 chr4 39162069 39162400 -145126262 + AluSx SINE Alu 1 331 0 2349 106 0 0 chr4 39163001 39163302 -145125360 - AluSx SINE Alu -11 301 1 397 338 20 26 chr4 39163468 39163770 -145124892 + L2 LINE L2 662 961 -2353 630 279 40 53 chr4 39164470 39164699 -145123963 - L2 LINE L2 0 3313 3088 2017 162 105 37 chr4 39164699 39164899 -145123763 - MSTB1 LTR MaLR -4 428 243 2140 117 0 20 chr4 39164899 39165198 -145123464 - AluSq SINE Alu -20 293 1 2017 162 105 37 chr4 39165198 39165398 -145123264 - MSTB1 LTR MaLR -189 243 1 630 279 40 53 chr4 39165398 39165490 -145123172 - L2 LINE L2 -225 3088 2996 754 266 178 0 chr4 39165523 39165827 -145122835 - MLT1L LTR MaLR -215 400 43 263 160 20 20 chr4 39165873 39165923 -145122739 - L2 LINE L2 -19 3253 3204 319 228 238 0 chr4 39166128 39166229 -145122433 - L2 LINE L2 0 3313 3189 245 119 0 0 chr4 39166293 39166335 -145122327 - MSTB1 LTR MaLR -326 106 65 266 303 77 64 chr4 39166346 39166729 -145121933 - L2 LINE L2 -194 3078 2676 1640 156 54 10 chr4 39166927 39167222 -145121440 - AluSx SINE Alu 0 312 5 2279 100 23 0 chr4 39169018 39169318 -145119344 - AluSg SINE Alu -3 307 1 180 27 81 0 chr4 39169445 39169482 -145119180 + A-rich Low_complexity Low_complexity 2 41 0 1017 32 0 8 chr4 39170139 39170264 -145118398 + L1PA5 LINE L1 6028 6151 -3 31 0 0 0 chr4 39170264 39170295 -145118367 + AT_rich Low_complexity Low_complexity 1 31 0 2156 117 3 0 chr4 39170493 39170793 -145117869 - AluY SINE Alu -10 301 1 1753 103 9 0 chr4 39171803 39172036 -145116626 - AluSg SINE Alu -75 235 1 2192 130 0 3 chr4 39172101 39172409 -145116253 - AluSx SINE Alu -5 307 1 2351 94 3 10 chr4 39172679 39172986 -145115676 - AluSc SINE Alu -4 305 1 2010 159 35 16 chr4 39173706 39174076 -145114586 + MSTB1 LTR MaLR 1 377 -55 315 65 0 0 chr4 39174076 39174122 -145114540 + (TC)n Simple_repeat Simple_repeat 2 47 0 237 173 77 0 chr4 39174133 39174185 -145114477 + MSTB1 LTR MaLR 402 457 0 1586 142 37 15 chr4 39174238 39174506 -145114156 - AluJo SINE Alu -38 274 1 2360 98 3 0 chr4 39174673 39174970 -145113692 - AluSx SINE Alu -12 300 3 258 285 33 98 chr4 39175181 39175310 -145113352 - MIR SINE MIR -12 250 139 2054 130 0 3 chr4 39175310 39175610 -145113052 + AluSx SINE Alu 1 299 -13 258 285 33 98 chr4 39175610 39175694 -145112968 - MIR SINE MIR -123 139 51 313 293 0 0 chr4 39175824 39175899 -145112763 - MIR3 SINE MIR -16 192 118 1507 116 27 4 chr4 39176139 39176364 -145112298 - MER30 DNA MER1_type 0 230 1 350 260 8 0 chr4 39177287 39177414 -145111248 + (TA)n Simple_repeat Simple_repeat 2 129 0 2175 113 0 10 chr4 39178071 39178372 -145110290 + AluSx SINE Alu 1 298 -14 298 210 25 25 chr4 39178514 39178595 -145110067 + MIR SINE MIR 5 85 -177 2017 141 0 7 chr4 39178617 39178923 -145109739 - AluSx SINE Alu 0 304 1 1641 184 14 3 chr4 39178925 39179218 -145109444 - AluJo SINE Alu -16 296 1 638 168 7 0 chr4 39179231 39179368 -145109294 + (TAGA)n Simple_repeat Simple_repeat 2 139 0 182 289 0 0 chr4 39179374 39179412 -145109250 + MIR SINE MIR 204 241 -21 312 260 153 68 chr4 39179502 39179737 -145108925 - Charlie8 DNA MER1_type -2160 257 3 2122 125 10 0 chr4 39179951 39180256 -145108406 - AluSx SINE Alu -4 308 1 518 131 10 71 chr4 39180257 39180356 -145108306 + LTR1 LTR ERV1 693 785 0 59 27 0 0 chr4 39180406 39180479 -145108183 + AT_rich Low_complexity Low_complexity 1 73 0 2149 123 13 0 chr4 39180671 39180973 -145107689 + AluSg SINE Alu 3 308 -2 1788 114 89 11 chr4 39181147 39181428 -145107234 - AluSx SINE Alu -9 303 1 1026 104 8 0 chr4 39181428 39181562 -145107100 - AluSq/x SINE Alu -177 135 1 820 61 0 0 chr4 39181720 39181818 -145106844 + AluSg/x SINE Alu 201 298 -11 378 192 46 83 chr4 39181830 39182050 -145106612 - MIR SINE MIR -40 222 16 2216 107 7 3 chr4 39182565 39182864 -145105798 + AluSx SINE Alu 1 300 -12 240 35 0 0 chr4 39182868 39182897 -145105765 + (TA)n Simple_repeat Simple_repeat 2 30 0 216 0 0 0 chr4 39182896 39182920 -145105742 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 232 353 110 15 chr4 39183787 39183923 -145104739 - L2 LINE L2 -3 3269 3121 2199 130 0 0 chr4 39183926 39184227 -145104435 - AluSx SINE Alu -11 301 1 4303 126 104 99 chr4 39184260 39185633 -145103029 + pTR5 LTR ERV1 743 2438 0 2367 112 0 0 chr4 39185965 39186269 -145102393 + AluSx SINE Alu 1 304 -8 1819 159 0 23 chr4 39186713 39187021 -145101641 - Tigger2a DNA MER2_type 0 444 144 1477 103 0 0 chr4 39187022 39187207 -145101455 + AluSg SINE Alu 1 185 -125 461 134 12 24 chr4 39187207 39187289 -145101373 + AluSg SINE Alu 217 297 -12 737 193 0 47 chr4 39187290 39187440 -145101222 - Tigger2a DNA MER2_type -291 143 1 503 266 70 25 chr4 39187448 39187647 -145101015 - L1ME LINE L1 -303 5818 5611 2483 73 0 0 chr4 39188562 39188862 -145099800 - AluY SINE Alu -11 300 1 1915 103 31 0 chr4 39189289 39189550 -145099112 + AluSx SINE Alu 1 269 -43 2389 79 3 0 chr4 39190041 39190344 -145098318 + AluY SINE Alu 1 304 -7 1000 303 98 34 chr4 39190379 39190941 -145097721 - L1MC4a LINE L1 -1878 5930 5333 318 80 0 0 chr4 39191095 39191145 -145097517 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 388 284 30 56 chr4 39192370 39192567 -145096095 - L2 LINE L2 -19 3294 3103 2377 74 24 0 chr4 39192635 39192932 -145095730 + AluSq SINE Alu 1 304 -9 207 288 136 64 chr4 39193296 39193421 -145095241 + L2 LINE L2 3139 3272 0 253 250 107 9 chr4 39193612 39193724 -145094938 - MER112 DNA MER1_type -25 235 113 261 244 0 49 chr4 39193856 39193938 -145094724 - MER112 DNA MER1_type -175 85 8 238 259 122 38 chr4 39194109 39194240 -145094422 - MIR SINE MIR -74 188 47 577 333 61 4 chr4 39194568 39194799 -145093863 + MIR SINE MIR 10 253 -9 5563 236 72 15 chr4 39194917 39196791 -145091871 - L1MEc LINE L1 -2325 3890 1973 1669 182 133 6 chr4 39196795 39197141 -145091521 + MER47B DNA MER2_type 28 417 -1 2981 269 80 56 chr4 39197143 39197700 -145090962 - L1MEc LINE L1 -4425 1971 1429 635 211 8 16 chr4 39197700 39197828 -145090834 - FLAM_A SINE Alu -2 131 5 2981 269 80 56 chr4 39197828 39198214 -145090448 - L1MEc LINE L1 -4967 1429 1054 1458 203 37 11 chr4 39198214 39198519 -145090143 - AluJb SINE Alu 0 316 5 2981 269 80 56 chr4 39198519 39198839 -145089823 - L1MEc LINE L1 -5342 1054 743 1447 148 170 0 chr4 39198839 39199116 -145089546 + MER33 DNA MER1_type 1 324 0 826 218 114 5 chr4 39199124 39199326 -145089336 + MER58A DNA MER1_type 1 224 0 2981 269 80 56 chr4 39199326 39199856 -145088806 - L1MEc LINE L1 -5659 737 122 2026 88 4 0 chr4 39200250 39200499 -145088163 - AluSp SINE Alu -63 250 1 212 208 0 38 chr4 39200963 39201016 -145087646 + A-rich Low_complexity Low_complexity 3 53 0 441 0 0 0 chr4 39201077 39201126 -145087536 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 317 321 87 29 chr4 39201314 39201591 -145087071 + L2 LINE L2 3016 3308 -5 300 291 99 20 chr4 39201724 39201875 -145086787 + MIR SINE MIR 31 193 -69 1127 158 0 0 chr4 39201883 39202060 -145086602 + FRAM SINE Alu 1 176 0 41 66 0 0 chr4 39202665 39202741 -145085921 + AT_rich Low_complexity Low_complexity 1 76 0 2191 127 3 13 chr4 39202792 39203107 -145085555 + AluSx SINE Alu 1 312 0 436 250 40 8 chr4 39203337 39203461 -145085201 + MIR SINE MIR 112 239 -23 416 183 24 24 chr4 39203510 39203592 -145085070 + MLT1B LTR MaLR 1 82 -308 1631 206 27 0 chr4 39203598 39203890 -145084772 - AluJb SINE Alu -12 300 1 1002 133 0 0 chr4 39203890 39204025 -145084637 - AluJo SINE Alu -177 135 1 1568 123 72 93 chr4 39204026 39204358 -145084304 + MLT1B LTR MaLR 66 390 0 535 202 18 0 chr4 39204358 39204472 -145084190 + L2 LINE L2 3188 3303 -10 24 0 0 0 chr4 39204597 39204621 -145084041 + AT_rich Low_complexity Low_complexity 1 24 0 2012 147 0 3 chr4 39205457 39205757 -145082905 - AluJb SINE Alu -13 299 1 1617 124 120 8 chr4 39205995 39206262 -145082400 + AluJb SINE Alu 1 297 -15 4224 126 20 88 chr4 39206535 39206998 -145081664 + LTR1 LTR ERV1 1 494 -291 2183 130 3 0 chr4 39206998 39207297 -145081365 + AluSx SINE Alu 1 300 -12 4224 126 20 88 chr4 39207297 39207574 -145081088 + LTR1 LTR ERV1 494 680 -105 2091 131 10 3 chr4 39207574 39207879 -145080783 - AluSx SINE Alu -5 307 1 4224 126 20 88 chr4 39207879 39207979 -145080683 + LTR1 LTR ERV1 680 785 0 21 36 0 0 chr4 39208238 39208266 -145080396 + GC_rich Low_complexity Low_complexity 1 28 0 21 100 0 0 chr4 39208328 39208398 -145080264 + GC_rich Low_complexity Low_complexity 1 70 0 23 0 0 0 chr4 39208412 39208435 -145080227 + GC_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 39208606 39208634 -145080028 + GC_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr4 39209261 39209299 -145079363 + GC_rich Low_complexity Low_complexity 1 38 0 185 0 40 0 chr4 39210104 39210129 -145078533 + (CCGCG)n Simple_repeat Simple_repeat 5 30 0 22 0 0 0 chr4 39210142 39210164 -145078498 + GC_rich Low_complexity Low_complexity 1 22 0 294 198 9 43 chr4 39210314 39210430 -145078232 + G-rich Low_complexity Low_complexity 4 115 0 23 0 0 0 chr4 39210482 39210505 -145078157 + GC_rich Low_complexity Low_complexity 1 23 0 242 123 46 46 chr4 39210548 39210613 -145078049 + (CGGGG)n Simple_repeat Simple_repeat 4 68 0 21 36 0 0 chr4 39210676 39210704 -145077958 + GC_rich Low_complexity Low_complexity 1 28 0 258 321 0 0 chr4 39211492 39211598 -145077064 + C-rich Low_complexity Low_complexity 1 106 0 207 100 0 0 chr4 39212951 39212981 -145075681 + (T)n Simple_repeat Simple_repeat 1 30 0 22 35 0 0 chr4 39214730 39214759 -145073903 + AT_rich Low_complexity Low_complexity 1 29 0 2551 81 0 0 chr4 39216192 39216499 -145072163 + AluSq SINE Alu 1 307 -6 188 98 0 98 chr4 39217412 39217453 -145071209 - L2 LINE L2 0 3313 3277 341 275 49 34 chr4 39217695 39217869 -145070793 + MIR3 SINE MIR 12 185 -62 550 221 46 8 chr4 39218199 39218330 -145070332 + MIR SINE MIR 32 167 -95 2261 110 0 0 chr4 39222737 39223029 -145065633 + AluSx SINE Alu 1 292 -20 454 212 23 30 chr4 39223332 39223464 -145065198 - L1MC5 LINE L1 -760 7201 7071 2133 109 7 7 chr4 39223535 39223837 -145064825 - AluSq SINE Alu -11 302 1 396 0 0 0 chr4 39224455 39224499 -145064163 + (TG)n Simple_repeat Simple_repeat 2 45 0 362 299 91 49 chr4 39225822 39226259 -145062403 + L1ME LINE L1 5330 5797 -324 2233 118 0 0 chr4 39226790 39227094 -145061568 - AluSx SINE Alu -6 306 3 2455 55 3 29 chr4 39227351 39227658 -145061004 + AluSp SINE Alu 1 299 -14 2247 101 0 0 chr4 39228654 39228941 -145059721 - AluSx SINE Alu -25 287 1 780 182 8 0 chr4 39230509 39230641 -145058021 - FLAM_A SINE Alu 0 133 1 1262 271 67 23 chr4 39230779 39231214 -145057448 - MER69 DNA AcHobo -1933 593 140 2509 183 21 30 chr4 39231217 39231587 -145057075 + MER6A DNA MER2_type 1 366 -499 2401 66 7 3 chr4 39231587 39231890 -145056772 - AluY SINE Alu -7 304 1 2509 183 21 30 chr4 39231890 39232045 -145056617 + MER6A DNA MER2_type 366 521 -84 1861 147 25 0 chr4 39232145 39232430 -145056232 - AluSx SINE Alu -20 292 1 2196 132 0 0 chr4 39232813 39233123 -145055539 - AluSx SINE Alu -2 310 1 921 180 197 34 chr4 39233337 39233632 -145055030 - MER2 DNA MER2_type 0 344 2 653 189 84 29 chr4 39233747 39234063 -145054599 - MER93b LTR ERV1 0 402 8 4987 142 10 16 chr4 39234820 39235590 -145053072 - LTR39 LTR ERV1 0 783 18 2253 129 3 0 chr4 39236000 39236311 -145052351 - AluSx SINE Alu 0 312 1 1481 214 169 38 chr4 39236336 39236832 -145051830 - MER34B LTR ERV1 0 565 5 23 33 0 0 chr4 39237594 39237624 -145051038 + AT_rich Low_complexity Low_complexity 1 30 0 357 221 103 81 chr4 39237875 39238011 -145050651 + L2 LINE L2 3175 3313 0 1123 114 0 0 chr4 39238638 39238787 -145049875 + AluSg SINE Alu 1 149 -161 543 345 73 0 chr4 39239108 39239340 -145049322 - MIR SINE MIR 0 262 14 1709 112 50 8 chr4 39239384 39239644 -145049018 + AluSx SINE Alu 23 293 -19 258 32 0 0 chr4 39240017 39240048 -145048614 + (TG)n Simple_repeat Simple_repeat 1 31 0 2188 91 0 21 chr4 39240089 39240374 -145048288 + AluSg SINE Alu 1 279 -31 2342 101 0 0 chr4 39240400 39240706 -145047956 + AluSg1 SINE Alu 1 306 -3 1563 101 55 0 chr4 39240829 39241047 -145047615 + MER30 DNA MER1_type 1 230 0 2275 97 7 10 chr4 39241066 39241374 -145047288 + AluSx SINE Alu 1 307 -5 236 296 0 39 chr4 39241525 39241615 -145047047 + MER5A DNA MER1_type 84 168 -10 251 229 0 57 chr4 39241629 39241699 -145046963 + MER69 DNA AcHobo 1 66 -111 254 94 0 0 chr4 39241746 39241778 -145046884 - MER6 DNA MER2_type 0 865 834 1022 159 0 6 chr4 39241880 39242409 -145046253 + (TGG)n Simple_repeat Simple_repeat 1 526 0 451 327 32 36 chr4 39242548 39242768 -145045894 + L2 LINE L2 3054 3272 0 192 200 0 0 chr4 39242790 39242835 -145045827 + (TGAA)n Simple_repeat Simple_repeat 4 48 0 241 299 231 0 chr4 39243193 39243310 -145045352 - MIR SINE MIR -91 171 28 829 264 98 65 chr4 39243360 39243788 -145044874 - MLT1J1 LTR MaLR -4 442 1 421 285 143 72 chr4 39244012 39244332 -145044330 + MLT1K LTR MaLR 131 490 -98 2154 120 10 0 chr4 39244332 39244631 -145044031 - AluSx SINE Alu -10 302 1 421 285 143 72 chr4 39244631 39244738 -145043924 + MLT1K LTR MaLR 490 588 0 234 62 0 0 chr4 39244847 39244879 -145043783 + (TC)n Simple_repeat Simple_repeat 1 32 0 785 183 58 62 chr4 39244908 39245116 -145043546 + MLT1B LTR MaLR 19 225 -165 198 191 0 0 chr4 39245227 39245269 -145043393 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 195 42 0 0 chr4 39245326 39245350 -145043312 + (TG)n Simple_repeat Simple_repeat 2 25 0 2222 60 13 57 chr4 39245569 39245884 -145042778 + AluSc SINE Alu 1 301 -8 341 277 125 9 chr4 39245893 39246005 -145042657 + MIR SINE MIR 45 169 -93 1507 55 0 4 chr4 39246006 39246217 -145042445 + L1PA6 LINE L1 5701 5906 -225 23 33 0 0 chr4 39247319 39247349 -145041313 + AT_rich Low_complexity Low_complexity 1 30 0 1802 147 22 26 chr4 39248295 39248608 -145040054 - AluJo SINE Alu 0 312 1 22 35 0 0 chr4 39249700 39249729 -145038933 + AT_rich Low_complexity Low_complexity 1 29 0 1972 161 6 3 chr4 39249915 39250226 -145038436 + AluJb SINE Alu 1 312 0 220 238 16 32 chr4 39250343 39250406 -145038256 + MER5A DNA MER1_type 128 189 0 299 273 0 0 chr4 39250620 39250686 -145037976 - MER5B DNA MER1_type -96 82 17 25 0 0 0 chr4 39251065 39251090 -145037572 + AT_rich Low_complexity Low_complexity 1 25 0 2182 91 19 60 chr4 39257129 39257447 -145031215 - AluSg SINE Alu -5 305 1 581 248 52 7 chr4 39257687 39257840 -145030822 - MIR SINE MIR -2 260 101 226 138 52 52 chr4 39257840 39257898 -145030764 - LTR31 LTR ERV1 -82 537 480 242 311 0 19 chr4 39258181 39258284 -145030378 - L1MC4 LINE L1 -1328 6714 6614 308 275 0 22 chr4 39258362 39258453 -145030209 + L1MC4 LINE L1 6614 6702 -1340 1859 166 0 0 chr4 39258461 39258751 -145029911 - AluJb SINE Alu -22 290 1 3811 221 75 20 chr4 39258811 39260407 -145028255 - L1ME1 LINE L1 -78 6088 4398 249 315 33 11 chr4 39260412 39260504 -145028158 + L1MDb LINE L1 240 333 -5786 398 289 147 0 chr4 39260512 39260737 -145027925 + L1MEd LINE L1 601 858 -5261 291 156 0 0 chr4 39260829 39260874 -145027788 - Alu SINE Alu -262 46 2 2278 105 0 0 chr4 39260995 39261299 -145027363 - AluSg SINE Alu -6 304 1 774 121 0 48 chr4 39261316 39261440 -145027222 - FLAM_C SINE Alu -17 126 9 2338 236 49 9 chr4 39261649 39262340 -145026322 + L1MDb LINE L1 497 1226 -4893 418 223 22 58 chr4 39262481 39262620 -145026042 + LTR16A1 LTR ERVL 324 457 0 27 0 0 0 chr4 39262744 39262771 -145025891 + AT_rich Low_complexity Low_complexity 1 27 0 312 225 79 34 chr4 39262773 39262862 -145025800 + Zaphod DNA AcHobo 3939 4031 0 946 285 51 60 chr4 39262869 39263539 -145025123 - L1ME1 LINE L1 -1773 4373 3710 2792 173 29 35 chr4 39263594 39263893 -145024769 - MER89 LTR ERV1 0 559 263 2281 101 3 0 chr4 39263893 39264189 -145024473 + AluSx SINE Alu 1 297 -15 2792 173 29 35 chr4 39264189 39264439 -145024223 - MER89 LTR ERV1 -296 263 13 501 330 62 12 chr4 39264448 39264945 -145023717 - L1ME1 LINE L1 -2510 3636 3115 21 0 0 0 chr4 39265023 39265044 -145023618 + AT_rich Low_complexity Low_complexity 1 21 0 739 30 10 30 chr4 39265091 39265191 -145023471 - L1PA4 LINE L1 0 6155 6058 2480 123 22 8 chr4 39265209 39265568 -145023094 - THE1B LTR MaLR 0 364 1 276 321 86 0 chr4 39265764 39265845 -145022817 + MER91A DNA MER1_type 109 196 0 239 328 112 34 chr4 39265968 39266404 -145022258 + L1M4 LINE L1 4786 5255 -891 1451 188 43 8 chr4 39266476 39266731 -145021931 + Tigger7 DNA MER2_type 1 264 -2223 186 118 0 0 chr4 39266731 39266765 -145021897 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 571 185 0 0 chr4 39266766 39266858 -145021804 + Tigger7 DNA MER2_type 2496 2587 0 209 226 0 19 chr4 39266987 39267040 -145021622 + GA-rich Low_complexity Low_complexity 3 54 0 2524 25 0 3 chr4 39267254 39267562 -145021100 - AluYa5 SINE Alu 0 307 1 1129 218 54 51 chr4 39268012 39268384 -145020278 - MER69B DNA AcHobo -1 1225 853 2137 123 7 0 chr4 39268384 39268686 -145019976 - AluSx SINE Alu -4 308 5 684 141 0 0 chr4 39268721 39268813 -145019849 - FLAM SINE Alu -14 129 38 229 266 16 0 chr4 39268877 39268941 -145019721 - MER69B DNA AcHobo -378 848 784 965 140 6 0 chr4 39269072 39269250 -145019412 + (CCA)n Simple_repeat Simple_repeat 2 180 0 1920 144 7 7 chr4 39269429 39269714 -145018948 - AluSx SINE Alu -17 295 11 208 296 26 26 chr4 39269747 39269862 -145018800 + (TATATG)n Simple_repeat Simple_repeat 3 117 0 * 215 337 0 12 chr4 39269798 39269884 -145018778 + (CATATA)n Simple_repeat Simple_repeat 2 86 0 1511 194 52 3 chr4 39270057 39270076 -145018586 - AluJo SINE Alu -10 302 285 305 24 24 0 chr4 39270076 39270118 -145018544 + (TTAA)n Simple_repeat Simple_repeat 1 43 0 1511 194 52 3 chr4 39270118 39270386 -145018276 - AluJo SINE Alu -27 285 1 230 217 0 0 chr4 39270456 39270502 -145018160 + Alu SINE Alu 126 171 -132 841 176 35 129 chr4 39270632 39270887 -145017775 - MIR SINE MIR 0 262 32 1834 144 28 11 chr4 39271712 39271997 -145016665 + AluJb SINE Alu 14 303 -9 2047 152 21 50 chr4 39272154 39272479 -145016183 + MLT1A1 LTR MaLR 1 315 -50 2537 45 6 22 chr4 39272479 39272793 -145015869 + AluY SINE Alu 1 309 -2 2047 152 21 50 chr4 39272793 39272843 -145015819 + MLT1A1 LTR MaLR 315 365 0 560 323 23 18 chr4 39272962 39273182 -145015480 + MIR SINE MIR 41 261 -1 356 289 89 6 chr4 39273939 39274110 -145014552 + MIR SINE MIR 47 235 -27 2596 59 0 0 chr4 39274705 39275009 -145013653 + AluY SINE Alu 1 304 -7 1768 180 0 0 chr4 39275016 39275323 -145013339 + AluJb SINE Alu 1 307 0 2325 84 37 0 chr4 39275399 39275696 -145012966 + AluSp SINE Alu 1 308 -5 233 160 0 100 chr4 39276005 39276055 -145012607 - MLT2D LTR ERVL 0 414 370 525 256 117 36 chr4 39276169 39276392 -145012270 + MIR SINE MIR 7 247 -15 2229 132 25 25 chr4 39276447 39276802 -145011860 + THE1A LTR MaLR 1 355 0 339 353 43 0 chr4 39277200 39277316 -145011346 - L3 LINE CR1 -837 740 620 467 250 9 26 chr4 39277356 39277472 -145011190 + MER81 DNA DNA 1 114 0 222 299 176 21 chr4 39277615 39277802 -145010860 - L3 LINE CR1 -1128 449 234 234 320 126 0 chr4 39279989 39280092 -145008570 + MIR SINE MIR 12 127 -135 503 192 30 63 chr4 39282045 39282176 -145006486 - MIR SINE MIR -62 146 50 250 211 0 42 chr4 39282576 39282671 -145005991 + L1MC4 LINE L1 6615 6705 -1337 25 31 0 0 chr4 39282833 39282865 -145005797 + AT_rich Low_complexity Low_complexity 1 32 0 702 212 41 0 chr4 39283942 39284088 -145004574 + L2 LINE L2 3117 3268 -4 807 172 0 0 chr4 39285094 39285216 -145003446 + FLAM_A SINE Alu 1 122 -11 198 0 0 0 chr4 39285690 39285712 -145002950 + (A)n Simple_repeat Simple_repeat 1 22 0 4989 119 39 11 chr4 39486146 39486911 -144801751 + MER11C LTR ERVK 271 1057 -14 192 77 0 0 chr4 39487083 39487109 -144801553 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 696 133 0 0 chr4 39487123 39487228 -144801434 - L1 LINE L1 -1314 4832 4728 2760 183 118 15 chr4 39487328 39487929 -144800733 + MER63C DNA MER1_type 268 930 0 334 303 79 7 chr4 39488934 39489086 -144799576 + MIR3 SINE MIR 33 195 -13 518 332 70 29 chr4 39489451 39489695 -144798967 + MIR SINE MIR 8 261 -1 359 303 90 0 chr4 39490130 39490252 -144798410 + L2 LINE L2 3180 3312 -1 433 176 0 0 chr4 39490255 39490323 -144798339 + AluS SINE Alu 2 69 -244 471 135 156 31 chr4 39490962 39491058 -144797604 + Ricksha DNA DNA 8 115 -1139 * 5925 131 20 44 chr4 39491041 39491388 -144797274 + Ricksha DNA DNA 1707 2061 -1185 2287 95 0 7 chr4 39491388 39491684 -144796978 + AluSg SINE Alu 6 299 -11 5925 131 20 44 chr4 39491684 39492340 -144796322 + Ricksha DNA DNA 2061 2686 -560 1278 173 4 13 chr4 39492341 39492572 -144796090 + AluJo SINE Alu 2 230 -82 2797 149 113 10 chr4 39492609 39493132 -144795530 + Ricksha DNA DNA 2678 3254 0 719 142 9 9 chr4 39493753 39493866 -144794796 - MLT1A1 LTR MaLR -252 113 1 437 292 112 52 chr4 39495408 39495803 -144792859 + L1M4 LINE L1 2429 2852 -3294 1889 128 0 18 chr4 39495803 39496077 -144792585 + AluSx SINE Alu 1 269 -43 437 292 112 52 chr4 39496077 39496102 -144792560 + L1M4 LINE L1 2852 2874 -3272 2216 191 34 46 chr4 39496331 39496833 -144791829 + MLT1D LTR MaLR 8 503 -2 2210 127 10 0 chr4 39496841 39497149 -144791513 + AluSx SINE Alu 1 311 -1 396 343 62 16 chr4 39497353 39497595 -144791067 + L1MEd LINE L1 849 1101 -5018 21 57 0 0 chr4 39497891 39497926 -144790736 + AT_rich Low_complexity Low_complexity 1 35 0 36987 60 14 1 chr4 39498330 39502982 -144785680 + L1P LINE L1 1 4711 -1435 2892 110 5 2 chr4 39503216 39503616 -144785046 - MLT2A2 LTR ERVL -51 402 2 450 336 8 16 chr4 39503627 39503752 -144784910 - L2 LINE L2 -8 3264 3141 317 270 101 2 chr4 39503851 39503971 -144784691 - MIR SINE MIR -57 151 19 203 257 68 40 chr4 39504608 39504682 -144783980 - L2 LINE L2 -4 3268 3193 434 284 0 98 chr4 39504908 39505123 -144783539 + L2 LINE L2 3116 3309 -4 180 0 0 0 chr4 39505354 39505374 -144783288 + (T)n Simple_repeat Simple_repeat 1 20 0 937 176 6 0 chr4 39506615 39506774 -144781888 + AluJb SINE Alu 138 297 -15 268 240 125 31 chr4 39507076 39507172 -144781490 - L2 LINE L2 -6 3307 3203 2087 121 3 0 chr4 39508356 39508670 -144779992 + AluSx SINE Alu 1 315 0 260 296 10 31 chr4 39508734 39508832 -144779830 - MER5A DNA MER1_type -6 183 88 1607 185 67 34 chr4 39508897 39509254 -144779408 - MLT1E LTR MaLR -2 591 223 294 177 0 32 chr4 39509391 39509453 -144779209 - MLT1E LTR MaLR -581 73 14 2140 135 13 0 chr4 39509490 39509794 -144778868 + AluSg SINE Alu 1 308 -2 2230 102 3 7 chr4 39510197 39510492 -144778170 + AluSq SINE Alu 4 297 -16 962 202 0 6 chr4 39510791 39510974 -144777688 + FRAM SINE Alu 1 176 0 905 281 88 48 chr4 39510995 39511068 -144777594 + L1M4 LINE L1 3705 3774 -2372 354 45 0 0 chr4 39511068 39511112 -144777550 + (CA)n Simple_repeat Simple_repeat 2 45 0 905 281 88 48 chr4 39511112 39511871 -144776791 + L1M4 LINE L1 3774 4570 -1576 404 306 102 46 chr4 39512017 39512477 -144776185 + L1MA4A LINE L1 4912 5397 -749 2326 107 10 0 chr4 39512616 39512924 -144775738 + AluSx SINE Alu 1 311 -1 2355 85 3 0 chr4 39513078 39513371 -144775291 + AluSp SINE Alu 1 294 -19 613 253 141 24 chr4 39514783 39514963 -144773699 - LTR33 LTR ERVL -4 517 359 189 0 0 0 chr4 39514963 39514984 -144773678 + (CAGAGA)n Simple_repeat Simple_repeat 2 22 0 613 253 141 24 chr4 39514984 39514999 -144773663 - LTR33 LTR ERVL -162 359 347 282 29 0 0 chr4 39514999 39515034 -144773628 + (CA)n Simple_repeat Simple_repeat 2 36 0 613 253 141 24 chr4 39515034 39515086 -144773576 - LTR33 LTR ERVL -174 347 240 3188 138 113 63 chr4 39515133 39515278 -144773384 + L1MA4A LINE L1 5520 5656 -647 2001 147 0 16 chr4 39515278 39515591 -144773071 + AluJb SINE Alu 5 312 0 3188 138 113 63 chr4 39515591 39516170 -144772492 + L1MA4A LINE L1 5656 6280 -23 603 262 33 11 chr4 39516171 39516354 -144772308 - LTR33 LTR ERVL -331 190 4 185 333 40 13 chr4 39516612 39516687 -144771975 - L2 LINE L2 -1 3312 3236 189 239 65 0 chr4 39516819 39516865 -144771797 + L2 LINE L2 3265 3313 0 1097 107 0 0 chr4 39517146 39517295 -144771367 + L1P5 LINE L1 5520 5668 -488 411 109 0 0 chr4 39517299 39517354 -144771308 + Alu SINE Alu 5 59 -250 2308 100 3 0 chr4 39518067 39518366 -144770296 + AluSc SINE Alu 1 300 -9 1086 252 55 77 chr4 39518667 39519228 -144769434 + MER39 LTR ERV1 1 707 0 189 282 0 0 chr4 39519699 39519738 -144768924 - L2 LINE L2 -95 3218 3180 595 303 0 56 chr4 39519939 39520137 -144768525 + L2 LINE L2 3081 3267 -5 899 170 7 7 chr4 39520144 39520297 -144768365 + FRAM SINE Alu 1 153 -23 236 288 220 0 chr4 39520309 39520427 -144768235 - MIR SINE MIR -13 249 106 5245 154 42 22 chr4 39522351 39522809 -144765853 + L1MA5 LINE L1 5325 5772 -528 2299 117 66 26 chr4 39522809 39523159 -144765503 - THE1B LTR MaLR 0 364 1 5245 154 42 22 chr4 39523159 39523652 -144765010 + L1MA5 LINE L1 5772 6295 -5 777 269 43 5 chr4 39523664 39523872 -144764790 - MLT1L LTR MaLR -23 592 377 2377 88 0 0 chr4 39523921 39524216 -144764446 - AluSg SINE Alu -15 295 1 584 194 0 0 chr4 39524254 39524347 -144764315 - FLAM_A SINE Alu -45 97 5 504 282 112 50 chr4 39524371 39524612 -144764050 - MLT1L LTR MaLR -335 280 25 2234 98 0 3 chr4 39524666 39524961 -144763701 - AluSg SINE Alu -16 294 1 2878 96 3 3 chr4 39525545 39525908 -144762754 - THE1B LTR MaLR -1 363 1 393 200 9 36 chr4 39525910 39526020 -144762642 + LTR67 LTR ERVL 428 534 -23 628 234 35 35 chr4 39526046 39526217 -144762445 - MIR3 SINE MIR -3 205 35 1060 229 12 33 chr4 39526757 39527002 -144761660 - MIR SINE MIR -21 241 2 523 207 0 0 chr4 39527046 39527128 -144761534 - AluS SINE Alu -231 82 1 21 0 0 0 chr4 39527472 39527493 -144761169 + AT_rich Low_complexity Low_complexity 1 21 0 2145 111 4 0 chr4 39527821 39528131 -144760531 + AluSx SINE Alu 1 311 0 2746 129 65 0 chr4 39528376 39528778 -144759884 - MSTA LTR MaLR 0 428 1 1593 217 20 14 chr4 39528803 39529153 -144759509 - LTR10D LTR ERV1 0 513 162 251 308 88 11 chr4 39529593 39529684 -144758978 + L2 LINE L2 3174 3271 -1 * 274 180 0 101 chr4 39529683 39529772 -144758890 - L2 LINE L2 -173 3099 3020 1853 134 40 3 chr4 39530528 39530827 -144757835 - AluSg SINE Alu 0 310 1 189 350 152 41 chr4 39531134 39531719 -144756943 - L2 LINE L2 -465 2849 2200 971 172 6 18 chr4 39532028 39532191 -144756471 - FRAM SINE Alu -5 161 1 252 0 0 0 chr4 39533710 39533738 -144754924 + (TG)n Simple_repeat Simple_repeat 2 29 0 257 227 55 45 chr4 39533777 39533887 -144754775 - L1MC/D LINE L1 -1921 5887 5777 725 289 179 7 chr4 39534217 39534518 -144754144 - L2 LINE L2 0 3313 2961 707 274 14 28 chr4 39534993 39535208 -144753454 + MIR SINE MIR 40 251 -11 194 91 30 0 chr4 39535209 39535242 -144753420 + (CACCAT)n Simple_repeat Simple_repeat 3 36 0 734 266 51 74 chr4 39535812 39536068 -144752594 + MIR SINE MIR 12 261 -1 404 52 39 26 chr4 39536792 39536806 -144751856 + (GAAA)n Simple_repeat Simple_repeat 3 15 -65 2106 119 13 7 chr4 39536806 39537116 -144751546 + AluSx SINE Alu 1 312 0 404 52 39 26 chr4 39537116 39537178 -144751484 + (GAAA)n Simple_repeat Simple_repeat 15 80 0 234 0 0 0 chr4 39537650 39537676 -144750986 + (CA)n Simple_repeat Simple_repeat 2 27 0 2111 115 3 13 chr4 39538896 39539208 -144749454 - AluSx SINE Alu -3 309 1 2043 86 2 176 chr4 39540266 39540674 -144747988 - MER1B DNA MER1_type 0 337 1 270 139 0 0 chr4 39540750 39540793 -144747869 + L2 LINE L2 3271 3313 0 2472 66 0 10 chr4 39540797 39541101 -144747561 + AluSc SINE Alu 1 301 -8 2235 87 7 7 chr4 39541955 39542244 -144746418 - AluSc SINE Alu -9 300 12 2576 125 28 14 chr4 39542934 39543293 -144745369 + THE1B LTR MaLR 1 364 0 506 262 44 38 chr4 39544320 39544503 -144744159 - MIR SINE MIR -20 242 59 609 172 48 86 chr4 39544581 39544767 -144743895 - MER96B DNA MER1_type? -238 179 1 213 184 0 0 chr4 39544932 39544970 -144743692 + L2 LINE L2 3217 3254 -18 2148 135 0 6 chr4 39544977 39545289 -144743373 + AluSx SINE Alu 1 310 -2 543 248 163 0 chr4 39546040 39546193 -144742469 + MER5A DNA MER1_type 12 189 0 310 172 0 62 chr4 39546407 39546471 -144742191 + MIR SINE MIR 91 150 -58 2276 91 0 7 chr4 39547132 39547430 -144741232 + AluSx SINE Alu 1 296 -16 1656 178 107 67 chr4 39547541 39547990 -144740672 + MLT1C LTR MaLR 1 467 0 244 301 12 12 chr4 39548148 39548231 -144740431 - MARNA DNA Mariner -27 559 477 2336 92 3 0 chr4 39548320 39548626 -144740036 + AluSg SINE Alu 2 308 -2 204 43 43 43 chr4 39548762 39548775 -144739887 + (CAAA)n Simple_repeat Simple_repeat 2 14 -34 2492 70 0 6 chr4 39548775 39549088 -144739574 + AluY SINE Alu 1 311 0 204 43 43 43 chr4 39549088 39549121 -144739541 + (CAAA)n Simple_repeat Simple_repeat 13 48 0 387 242 142 74 chr4 39549819 39549953 -144738709 - MIR SINE MIR -19 243 91 2241 98 7 10 chr4 39549953 39550258 -144738404 + AluSq SINE Alu 1 304 -9 387 242 142 74 chr4 39550258 39550313 -144738349 - MIR SINE MIR -171 91 41 295 307 31 24 chr4 39550420 39550547 -144738115 + L1ME LINE L1 5629 5756 -365 249 108 0 0 chr4 39550736 39550773 -144737889 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 2425 82 0 0 chr4 39552017 39552311 -144736351 + AluSc SINE Alu 1 294 -15 1875 179 0 0 chr4 39552372 39552684 -144735978 + AluJo SINE Alu 1 312 0 249 278 0 0 chr4 39553138 39553192 -144735470 + L2 LINE L2 3230 3283 -30 1062 96 0 84 chr4 39553268 39553435 -144735227 - AluSg/x SINE Alu -84 228 76 209 211 0 0 chr4 39554862 39554900 -144733762 + GA-rich Low_complexity Low_complexity 2 39 0 298 275 44 33 chr4 39555238 39555329 -144733333 - MIR SINE MIR -95 113 22 2195 110 7 13 chr4 39555364 39555672 -144732990 - AluSx SINE Alu -6 306 1 345 313 30 38 chr4 39556495 39556626 -144732036 + L2 LINE L2 3137 3266 -6 25 31 0 0 chr4 39556643 39556675 -144731987 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr4 39556688 39556724 -144731938 + AT_rich Low_complexity Low_complexity 1 36 0 483 260 102 59 chr4 39557144 39557189 -144731473 - L2 LINE L2 -116 3197 3155 2283 82 0 0 chr4 39557189 39557495 -144731167 + AluSg SINE Alu 3 308 0 483 260 102 59 chr4 39557495 39557584 -144731078 - L2 LINE L2 -158 3155 3071 2069 190 3 11 chr4 39557584 39557952 -144730710 + MLT1A1 LTR MaLR 1 365 0 483 260 102 59 chr4 39557952 39558169 -144730493 - L2 LINE L2 -242 3071 2829 229 303 0 64 chr4 39558284 39558393 -144730269 - L2 LINE L2 -226 3046 2945 222 149 0 21 chr4 39558397 39558413 -144730249 + (GA)n Simple_repeat Simple_repeat 2 17 -30 2123 128 0 3 chr4 39558413 39558711 -144729951 + AluSx SINE Alu 1 297 -15 222 149 0 21 chr4 39558711 39558741 -144729921 + (GA)n Simple_repeat Simple_repeat 17 47 0 375 290 26 37 chr4 39558887 39559108 -144729554 + MIR3 SINE MIR 3 212 -50 558 278 21 31 chr4 39560897 39561088 -144727574 - MIR SINE MIR -4 258 70 2455 68 3 0 chr4 39561648 39561944 -144726718 + AluSc SINE Alu 1 297 -12 235 300 0 0 chr4 39562019 39562069 -144726593 - L2 LINE L2 -17 3255 3206 452 246 189 0 chr4 39562515 39562690 -144725972 + MIR SINE MIR 48 255 -7 728 289 71 0 chr4 39562701 39562912 -144725750 + MIR SINE MIR 7 232 -30 2211 92 0 0 chr4 39562929 39563242 -144725420 + AluSc SINE Alu 1 313 0 1682 150 57 21 chr4 39563607 39563887 -144724775 + AluJo SINE Alu 1 290 -22 237 288 0 45 chr4 39564760 39564826 -144723836 - L2 LINE L2 -10 3303 3241 2098 105 11 0 chr4 39564940 39565225 -144723437 - AluSx SINE Alu -7 305 18 1865 114 43 11 chr4 39565327 39565608 -144723054 + AluSx SINE Alu 15 304 -8 2207 103 7 3 chr4 39566321 39566621 -144722041 + AluSg SINE Alu 1 301 -9 2376 96 3 3 chr4 39566842 39567191 -144721471 + AluSx SINE Alu 1 349 0 731 251 46 0 chr4 39567307 39567502 -144721160 + L2 LINE L2 2418 2621 -693 822 243 52 24 chr4 39567604 39567933 -144720729 + LTR16B LTR ERVL 114 451 -13 1033 275 40 29 chr4 39567937 39568486 -144720176 + L2 LINE L2 2614 3156 -157 248 172 54 86 chr4 39568637 39568730 -144719932 + MLT1I LTR MaLR 319 408 -1 2228 114 0 19 chr4 39568737 39569052 -144719610 - AluSx SINE Alu -3 309 1 261 247 14 0 chr4 39569575 39569648 -144719014 + L1MC4a LINE L1 5393 5466 -2342 830 204 105 0 chr4 39569664 39569855 -144718807 - MIR SINE MIR -1 261 51 277 203 43 0 chr4 39569864 39569933 -144718729 + L1MC4a LINE L1 5845 5916 -1892 267 270 20 20 chr4 39569947 39570047 -144718615 + (TATATG)n Simple_repeat Simple_repeat 2 101 0 22 0 0 0 chr4 39571076 39571098 -144717564 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr4 39571228 39571272 -144717390 + AT_rich Low_complexity Low_complexity 1 44 0 224 316 38 0 chr4 39571999 39572078 -144716584 + L2 LINE L2 3178 3259 -13 243 61 0 0 chr4 39572095 39572128 -144716534 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 2180 115 0 0 chr4 39572184 39572479 -144716183 + AluSq SINE Alu 17 311 -2 2194 112 0 13 chr4 39573583 39573888 -144714774 - AluSx SINE Alu -11 301 1 371 214 0 56 chr4 39573940 39574029 -144714633 + MIR SINE MIR 49 132 -130 182 233 23 0 chr4 39574236 39574279 -144714383 + L2 LINE L2 3262 3305 -8 262 323 104 25 chr4 39576495 39576696 -144711966 + MIR SINE MIR 30 246 -16 * 1047 265 4 19 chr4 39576668 39576925 -144711737 - MIR SINE MIR -4 258 6 1989 109 3 42 chr4 39577412 39577724 -144710938 + AluSx SINE Alu 1 300 -12 4192 158 7 40 chr4 39578047 39578795 -144709867 - L1MB3 LINE L1 0 6183 5461 616 129 2 0 chr4 39578822 39578922 -144709740 - L1P2 LINE L1 -674 5480 5379 22 35 0 0 chr4 39578924 39578953 -144709709 + AT_rich Low_complexity Low_complexity 1 29 0 707 282 97 63 chr4 39579510 39579890 -144708772 + LTR16A LTR ERVL 52 444 -6 261 188 0 0 chr4 39579898 39579946 -144708716 - L1MC/D LINE L1 -1977 5831 5784 411 127 64 13 chr4 39579947 39580104 -144708558 + (TA)n Simple_repeat Simple_repeat 1 165 0 1755 140 4 29 chr4 39581029 39581307 -144707355 - AluSx SINE Alu -1 311 41 187 255 0 20 chr4 39581695 39581746 -144706916 - L3 LINE CR1 -1 1576 1527 * 249 286 39 118 chr4 39581716 39581894 -144706768 - MIR3 SINE MIR -25 183 20 1859 153 72 3 chr4 39583039 39583360 -144705302 + MER7A DNA MER2_type 6 346 0 1517 236 58 28 chr4 39583367 39583799 -144704863 + MLT1E1 LTR MaLR 20 464 -190 715 187 59 53 chr4 39584038 39584225 -144704437 + MLT1E1 LTR MaLR 467 654 0 2310 117 0 0 chr4 39584815 39585123 -144703539 - AluSx SINE Alu -4 308 1 29 0 0 0 chr4 39586548 39586577 -144702085 + AT_rich Low_complexity Low_complexity 1 29 0 494 253 141 30 chr4 39586851 39587049 -144701613 + MIR SINE MIR 1 220 -42 424 238 0 0 chr4 39588170 39588254 -144700408 + L2 LINE L2 3227 3310 -3 204 40 0 0 chr4 39588441 39588466 -144700196 + (GGAA)n Simple_repeat Simple_repeat 2 26 0 2240 97 10 0 chr4 39588581 39588880 -144699782 - AluY SINE Alu -9 302 1 436 309 141 49 chr4 39588889 39589258 -144699404 + MLT1J LTR MaLR 109 511 0 465 266 72 99 chr4 39589270 39589533 -144699129 + MIR SINE MIR 2 257 -5 1732 175 24 17 chr4 39590466 39590763 -144697899 - AluJo SINE Alu -13 299 1 2262 103 0 0 chr4 39592059 39592359 -144696303 - AluSx SINE Alu -12 300 1 317 275 74 69 chr4 39592666 39592687 -144695975 + L2 LINE L2 1779 1798 -1516 2368 84 3 0 chr4 39592687 39592985 -144695677 + AluSx SINE Alu 1 299 -13 317 275 74 69 chr4 39592985 39593152 -144695510 + L2 LINE L2 1798 1968 -1346 1711 158 0 4 chr4 39593590 39593855 -144694807 + AluJo SINE Alu 10 273 -39 2066 143 3 0 chr4 39593883 39594191 -144694471 + AluSx SINE Alu 1 309 -3 297 302 148 16 chr4 39594678 39594867 -144693795 + L2 LINE L2 2129 2342 -972 803 145 15 0 chr4 39594870 39595001 -144693661 + FLAM_C SINE Alu 1 133 -10 562 309 16 16 chr4 39595069 39595257 -144693405 + MER5A DNA MER1_type 2 189 0 221 250 62 0 chr4 39595258 39595322 -144693340 + L2 LINE L2 2398 2465 -849 244 372 0 81 chr4 39595834 39595982 -144692680 + L2 LINE L2 3040 3175 -97 196 133 44 44 chr4 39596016 39596061 -144692601 - MIR3 SINE MIR -19 189 145 227 274 68 0 chr4 39596064 39596137 -144692525 + L3 LINE CR1 1466 1543 -34 2398 79 3 0 chr4 39596518 39596810 -144691852 - AluSp SINE Alu -20 293 1 2907 10 0 0 chr4 39596816 39597127 -144691535 - AluYb8 SINE Alu -7 311 1 287 365 10 0 chr4 39597446 39597542 -144691120 + L3b LINE CR1 1402 1498 -85 2175 83 6 61 chr4 39597941 39598254 -144690408 - AluSx SINE Alu -16 296 1 236 303 26 13 chr4 39598496 39598572 -144690090 + MIR SINE MIR 21 97 -165 535 221 71 9 chr4 39598866 39598979 -144689683 + MER5B DNA MER1_type 7 126 -52 792 59 0 0 chr4 39598979 39599081 -144689581 + (CTATT)n Simple_repeat Simple_repeat 4 105 0 1206 159 20 10 chr4 39599083 39599284 -144689378 - AluJb SINE Alu -23 289 87 228 279 0 16 chr4 39599284 39599345 -144689317 + MER5B DNA MER1_type 119 178 0 329 292 80 29 chr4 39599444 39599581 -144689081 - L3 LINE CR1 -44 1533 1390 225 370 55 30 chr4 39599635 39599800 -144688862 - MIR3 SINE MIR -8 200 32 318 329 99 14 chr4 39600311 39600524 -144688138 + MIR SINE MIR 32 262 0 2484 64 3 0 chr4 39601177 39601474 -144687188 - AluSp SINE Alu -15 298 1 3718 113 25 25 chr4 39601515 39602039 -144686623 + MER1A DNA MER1_type 4 527 0 2172 198 33 25 chr4 39602047 39602531 -144686131 + MLT1D LTR MaLR 16 503 -2 2207 122 6 3 chr4 39602686 39602997 -144685665 + AluSx SINE Alu 1 312 0 268 229 0 0 chr4 39603260 39603308 -144685354 + MER3 DNA MER1_type 1 48 -161 6992 194 17 9 chr4 39603308 39604791 -144683871 + L1P4 LINE L1 3961 5455 -710 341 251 368 0 chr4 39604859 39605022 -144683640 - MIR SINE MIR -3 259 37 283 315 27 45 chr4 39605644 39605755 -144682907 + L2 LINE L2 3197 3305 -8 955 205 17 60 chr4 39606216 39606450 -144682212 + MER58A DNA MER1_type 1 224 0 42 71 0 0 chr4 39607651 39607735 -144680927 + AT_rich Low_complexity Low_complexity 1 84 0 1993 150 23 7 chr4 39607773 39608080 -144680582 + AluSx SINE Alu 1 312 0 22 35 0 0 chr4 39611219 39611248 -144677414 + GC_rich Low_complexity Low_complexity 1 29 0 30 109 0 0 chr4 39611343 39611471 -144677191 + GC_rich Low_complexity Low_complexity 1 128 0 495 328 65 4 chr4 39611758 39612005 -144676657 + L1ME LINE L1 5561 5822 -299 58 24 0 12 chr4 39612589 39612618 -144676044 + AT_rich Low_complexity Low_complexity 1 29 -53 2235 82 7 14 chr4 39612618 39612909 -144675753 - AluSx SINE Alu -23 289 1 58 24 0 12 chr4 39612909 39612962 -144675700 + AT_rich Low_complexity Low_complexity 29 82 0 1933 125 55 3 chr4 39612973 39613262 -144675400 - AluSx SINE Alu -8 304 1 185 282 127 14 chr4 39613391 39613462 -144675200 + MIR3 SINE MIR 113 191 -17 1677 191 10 3 chr4 39614090 39614389 -144674273 - AluJo SINE Alu -11 301 1 263 301 98 22 chr4 39614503 39614686 -144673976 - L1ME LINE L1 -299 5871 5675 3321 258 141 79 chr4 39614759 39616224 -144672438 - L2 LINE L2 -3 3310 1938 2408 99 0 0 chr4 39616224 39616528 -144672134 + AluY SINE Alu 1 304 -7 1911 155 0 7 chr4 39616538 39616835 -144671827 + AluSx SINE Alu 1 295 -17 3321 258 141 79 chr4 39616835 39618126 -144670536 - L2 LINE L2 -1383 1930 354 189 151 57 38 chr4 39618155 39618208 -144670454 - MER5B DNA MER1_type -27 151 98 647 252 26 41 chr4 39618209 39618580 -144670082 - L1ME LINE L1 -615 5549 5188 2301 99 0 0 chr4 39618636 39618929 -144669733 - AluSx SINE Alu -19 293 1 183 42 0 0 chr4 39619019 39619043 -144669619 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 206 170 0 21 chr4 39619250 39619297 -144669365 + CT-rich Low_complexity Low_complexity 1 46 0 6284 145 23 17 chr4 39619303 39621205 -144667457 - L1MA4 LINE L1 -21 6921 5009 2218 126 0 3 chr4 39621205 39621514 -144667148 - AluSx SINE Alu -4 308 1 9049 202 40 36 chr4 39621515 39623922 -144664740 - L1MA4 LINE L1 -2472 4316 1764 2071 118 0 36 chr4 39623922 39624226 -144664436 - AluSq SINE Alu -20 293 1 9049 202 40 36 chr4 39624226 39625981 -144662681 - L1MA4 LINE L1 -5024 1764 17 2951 199 22 17 chr4 39625993 39627122 -144661540 - L1MC2 LINE L1 -517 5827 4697 301 134 104 0 chr4 39627122 39627189 -144661473 - L1M4c LINE L1 -5507 1139 1066 1980 227 41 98 chr4 39627341 39627432 -144661230 - L1M4c LINE L1 -5475 1067 972 207 0 0 0 chr4 39627432 39627455 -144661207 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1761 164 4 4 chr4 39627458 39627738 -144660924 - AluJb SINE Alu -32 280 1 1980 227 41 98 chr4 39627738 39628450 -144660212 - L1M4c LINE L1 -5572 970 322 227 231 19 0 chr4 39632188 39632240 -144656422 + L2 LINE L2 3261 3313 0 2165 125 0 10 chr4 39633074 39633378 -144655284 + AluSx SINE Alu 1 301 -11 239 173 0 19 chr4 39633565 39633617 -144655045 + (CAA)n Simple_repeat Simple_repeat 2 52 0 422 300 68 46 chr4 39633727 39634007 -144654655 + L2 LINE L2 3028 3313 0 23 0 0 0 chr4 39634074 39634097 -144654565 + GC_rich Low_complexity Low_complexity 1 23 0 225 164 73 0 chr4 39634456 39634511 -144654151 + A-rich Low_complexity Low_complexity 2 60 0 5747 118 101 72 chr4 39634738 39634974 -144653688 - Tigger3b DNA MER2_type -1824 1204 976 2290 131 48 14 chr4 39634974 39635326 -144653336 + THE1B LTR MaLR 1 364 0 5747 118 101 72 chr4 39635326 39635778 -144652884 - Tigger3b DNA MER2_type -2052 976 539 183 42 0 0 chr4 39635778 39635802 -144652860 + (CA)n Simple_repeat Simple_repeat 2 25 0 5747 118 101 72 chr4 39635802 39636282 -144652380 - Tigger3b DNA MER2_type -2489 539 1 1159 197 150 8 chr4 39636282 39636515 -144652147 - MLT1A1 LTR MaLR -32 333 68 497 234 11 0 chr4 39636515 39636609 -144652053 + MER2 DNA MER2_type 1 95 -250 1121 185 45 0 chr4 39636612 39636812 -144651850 + AluJo SINE Alu 85 293 -19 881 169 97 68 chr4 39636812 39637060 -144651602 + MER2 DNA MER2_type 91 345 0 415 127 0 28 chr4 39637060 39637131 -144651531 - MLT1A1 LTR MaLR -296 69 1 1234 167 23 5 chr4 39637347 39637568 -144651094 - MLT1C LTR MaLR 0 467 243 498 221 44 108 chr4 39637818 39638067 -144650595 - MLT1C LTR MaLR -229 238 6 347 246 36 96 chr4 39638844 39639011 -144649651 - MLT1J LTR MaLR 0 511 355 185 204 0 23 chr4 39639868 39639912 -144648750 - L2 LINE L2 -1792 1522 1480 22 0 0 0 chr4 39639954 39639976 -144648686 + AT_rich Low_complexity Low_complexity 1 22 0 2319 107 3 0 chr4 39639980 39640289 -144648373 + AluSp SINE Alu 1 310 -3 458 235 25 101 chr4 39640323 39640561 -144648101 + L1ME4a LINE L1 5696 5915 -206 26 0 0 0 chr4 39640744 39640770 -144647892 + AT_rich Low_complexity Low_complexity 1 26 0 2109 137 3 0 chr4 39640973 39641266 -144647396 + AluSq SINE Alu 1 294 -19 31 26 0 0 chr4 39641266 39641304 -144647358 + AT_rich Low_complexity Low_complexity 1 38 0 354 250 12 0 chr4 39641326 39641406 -144647256 - MER63 DNA MER1_type -311 751 671 2140 168 28 14 chr4 39641481 39641844 -144646818 + MSTA LTR MaLR 61 428 0 9742 156 35 2 chr4 39641844 39643442 -144645220 + MSTA-int LTR MaLR 1 1651 0 2215 162 43 24 chr4 39643442 39643862 -144644800 + MSTA LTR MaLR 1 428 0 507 299 78 0 chr4 39643863 39644220 -144644442 + L1ME LINE L1 5285 5701 -420 1922 187 85 54 chr4 39644635 39644805 -144643857 + L1MB8 LINE L1 3943 4106 -2040 1582 183 3 40 chr4 39644805 39645105 -144643557 - AluJo SINE Alu -23 289 1 1922 187 85 54 chr4 39645105 39645254 -144643408 + L1MB8 LINE L1 4106 4249 -1897 1501 205 57 17 chr4 39645254 39645605 -144643057 - MLT1A1 LTR MaLR 0 365 1 1922 187 85 54 chr4 39645605 39645861 -144642801 + L1MB8 LINE L1 4249 4537 -1609 1037 119 0 7 chr4 39645861 39646004 -144642658 - AluSg/x SINE Alu -8 302 161 269 204 0 0 chr4 39646004 39646053 -144642609 + L1MB8 LINE L1 5510 5558 -622 540 222 9 0 chr4 39646057 39646165 -144642497 + LTR47A LTR ERVL 6 114 -338 292 234 0 0 chr4 39646238 39646302 -144642360 - HERVL18 LTR ERVL -4723 1324 1261 2193 150 62 36 chr4 39646368 39646789 -144641873 - MER66B LTR ERV1 -54 432 1 328 197 53 0 chr4 39647573 39647649 -144641013 + MER4B-int LTR ERV1 5996 6075 -683 1750 211 6 64 chr4 39647650 39648120 -144640542 + LTR47B LTR ERVL 1 443 0 2975 154 76 36 chr4 39648120 39648722 -144639940 + L1MB8 LINE L1 5553 6178 0 887 175 118 5 chr4 39648940 39649158 -144639504 + MER33 DNA MER1_type 1 219 -105 230 241 19 0 chr4 39649297 39649351 -144639311 - MIR SINE MIR -195 67 13 352 200 18 9 chr4 39649353 39649468 -144639194 - L1ME LINE L1 -5182 888 782 6813 75 13 46 chr4 39649480 39651365 -144637297 - SVA Other Other -518 1379 1 2070 133 0 3 chr4 39651519 39651852 -144636810 - AluSx SINE Alu 0 332 1 236 227 0 0 chr4 39653455 39653499 -144635163 + MLT1J1 LTR MaLR 109 152 -294 247 259 74 25 chr4 39653500 39653581 -144635081 + MLT1J1 LTR MaLR 126 210 -236 476 346 91 5 chr4 39653728 39653936 -144634726 + MER115 DNA AcHobo 201 426 -267 600 185 9 0 chr4 39653966 39654074 -144634588 + MER115 DNA AcHobo 489 597 -96 2114 128 0 3 chr4 39654097 39654394 -144634268 - AluSx SINE Alu -16 296 1 1137 123 6 12 chr4 39654425 39654587 -144634075 - AluSx SINE Alu -151 161 1 983 147 21 32 chr4 39654624 39654814 -144633848 - MER53 DNA DNA 0 189 2 380 271 41 25 chr4 39654871 39654993 -144633669 + MLT1J2 LTR MaLR 268 391 -59 2287 93 3 26 chr4 39655016 39655329 -144633333 - AluSp SINE Alu -7 306 1 500 196 131 26 chr4 39655717 39655870 -144632792 - MIR SINE MIR -15 247 79 2179 101 17 0 chr4 39655915 39656075 -144632587 - AluSx SINE Alu -19 293 124 351 0 0 0 chr4 39656075 39656114 -144632548 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2179 101 17 0 chr4 39656114 39656241 -144632421 - AluSx SINE Alu -188 124 1 1356 229 70 11 chr4 39656247 39656446 -144632216 + LTR37A LTR ERV1 34 220 -206 2896 51 19 3 chr4 39656446 39656816 -144631846 - L1PA7 LINE L1 -3 6151 5776 1356 229 70 11 chr4 39656816 39656987 -144631675 + LTR37A LTR ERV1 220 426 0 450 0 0 0 chr4 39657469 39657519 -144631143 + (CA)n Simple_repeat Simple_repeat 2 51 0 1586 132 0 0 chr4 39658070 39658289 -144630373 - AluSq SINE Alu -94 219 1 274 232 311 7 chr4 39658395 39658546 -144630116 - MIR SINE MIR -30 232 36 270 305 33 60 chr4 39660403 39660554 -144628108 + L2 LINE L2 3166 3312 -1 596 271 84 35 chr4 39661285 39661498 -144627164 - L1ME4a LINE L1 -3 6118 5917 2571 26 7 17 chr4 39661498 39661800 -144626862 - AluY SINE Alu -12 299 1 596 271 84 35 chr4 39661800 39662196 -144626466 - L1ME4a LINE L1 -204 5917 5445 191 179 26 0 chr4 39662217 39662256 -144626406 + L2 LINE L2 1695 1734 -1580 252 253 38 13 chr4 39662448 39662527 -144626135 - L1MC4 LINE L1 -339 7703 7623 672 212 75 14 chr4 39662960 39663106 -144625556 + FRAM SINE Alu 1 155 -11 231 304 37 25 chr4 39663166 39663327 -144625335 - L1ME4a LINE L1 -1869 4277 4115 41578 53 11 1 chr4 39663335 39669301 -144619361 - L1PA5 LINE L1 0 6154 131 420 303 165 42 chr4 39770640 39771046 -144517616 + L2 LINE L2 2804 3259 -54 210 304 54 11 chr4 39771976 39772068 -144516594 - MER5A DNA MER1_type -26 163 68 875 135 7 14 chr4 39772229 39772377 -144516285 + AluY SINE Alu 1 147 -164 727 152 8 0 chr4 39772590 39772715 -144515947 + AluSg/x SINE Alu 180 305 -4 1176 210 56 0 chr4 39773442 39773747 -144514915 + MER33 DNA MER1_type 3 324 0 1493 96 5 10 chr4 39773922 39774130 -144514532 + AluSg/x SINE Alu 88 294 -18 1186 209 35 26 chr4 39774274 39774893 -144513769 + L1ME2 LINE L1 5326 6047 -117 526 146 0 0 chr4 39774904 39774986 -144513676 - AluS SINE Alu -228 85 4 314 147 15 0 chr4 39774988 39775056 -144513606 + L1MA10 LINE L1 6264 6332 -2 207 338 39 0 chr4 39775136 39775213 -144513449 + MIR3 SINE MIR 4 83 -125 26 0 0 27 chr4 39775476 39775495 -144513167 + AT_rich Low_complexity Low_complexity 1 20 -16 699 162 0 63 chr4 39775495 39775637 -144513025 + AluJo SINE Alu 1 133 -169 26 0 0 27 chr4 39775637 39775654 -144513008 + AT_rich Low_complexity Low_complexity 20 36 0 207 0 0 0 chr4 39775665 39775688 -144512974 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1502 107 0 0 chr4 39775710 39775906 -144512756 + AluSg1 SINE Alu 1 196 -113 225 152 0 0 chr4 39775907 39775953 -144512709 + AluSg1 SINE Alu 263 308 0 222 171 0 0 chr4 39775976 39776017 -144512645 + A-rich Low_complexity Low_complexity 1 41 0 948 184 19 0 chr4 39776031 39776189 -144512473 + AluJo SINE Alu 129 289 -23 1725 150 13 19 chr4 39776267 39776581 -144512081 - AluJo SINE Alu 0 312 1 2860 116 29 26 chr4 39777052 39777542 -144511120 - L1PB4 LINE L1 0 6156 5666 321 302 133 43 chr4 39777808 39778109 -144510553 + L2 LINE L2 2043 2370 -944 216 322 70 61 chr4 39778168 39778649 -144510013 + L2 LINE L2 2549 3096 -176 509 277 60 0 chr4 39778700 39778866 -144509796 + MIR SINE MIR 70 245 -17 285 331 153 37 chr4 39778860 39779023 -144509639 + L2 LINE L2 3091 3272 0 * 195 222 0 0 chr4 39779023 39779068 -144509594 + (TGGA)n Simple_repeat Simple_repeat 2 46 0 947 193 13 75 chr4 39779134 39779276 -144509386 - MER58A DNA MER1_type -2196 224 101 2209 98 0 16 chr4 39779276 39779583 -144509079 + AluY SINE Alu 1 302 -9 947 193 13 75 chr4 39779583 39779679 -144508983 - MER58A DNA MER1_type -2319 101 1 1673 142 0 15 chr4 39780588 39780848 -144507814 + AluSx SINE Alu 1 256 -56 883 110 0 0 chr4 39780851 39780969 -144507693 + AluSg/x SINE Alu 187 304 -8 712 200 14 0 chr4 39781249 39781389 -144507273 - MIR SINE MIR -7 255 114 654 274 112 19 chr4 39781545 39781760 -144506902 + MIR SINE MIR 2 236 -26 958 170 35 0 chr4 39781875 39782046 -144506616 + MER2 DNA MER2_type 169 345 0 740 125 86 7 chr4 39782263 39782415 -144506247 + MER33 DNA MER1_type 26 189 -135 1104 92 20 0 chr4 39782415 39782568 -144506094 + L1P4 LINE L1 5439 5594 -574 547 131 25 16 chr4 39782568 39782690 -144505972 + MER33 DNA MER1_type 201 323 -1 1043 169 48 11 chr4 39782710 39782899 -144505763 - MIR SINE MIR -65 197 2 462 266 8 31 chr4 39782966 39783094 -144505568 - MIR SINE MIR -17 245 121 418 133 0 24 chr4 39783556 39783639 -144505023 + (GGAAA)n Simple_repeat Simple_repeat 4 84 0 2181 102 0 52 chr4 39784739 39785063 -144503599 + AluSg SINE Alu 1 307 -3 21 36 0 0 chr4 39785219 39785247 -144503415 + AT_rich Low_complexity Low_complexity 1 28 0 1316 225 111 20 chr4 39785269 39785766 -144502896 + L1M4 LINE L1 4319 4860 -1286 2261 90 0 40 chr4 39785793 39786116 -144502546 + AluSg SINE Alu 1 310 0 769 155 46 11 chr4 39786142 39786316 -144502346 - L1MB8 LINE L1 -1 6177 5998 1373 129 63 14 chr4 39786316 39786730 -144501932 + L1MD1 LINE L1 5751 6240 -2 2025 179 65 4 chr4 39786762 39787220 -144501442 + L1M4 LINE L1 4872 5357 -789 28777 33 5 3 chr4 39787328 39791747 -144496915 + L1PA4 LINE L1 1730 6151 -4 30 0 0 0 chr4 39791747 39791777 -144496885 + AT_rich Low_complexity Low_complexity 1 30 0 603 257 73 30 chr4 39792632 39792850 -144495812 + MIR SINE MIR 37 262 0 27 62 0 0 chr4 39793070 39793118 -144495544 + AT_rich Low_complexity Low_complexity 1 48 0 872 166 0 20 chr4 39793134 39793285 -144495377 - MER106B DNA MER1_type -910 149 2 1733 145 20 44 chr4 39793801 39794098 -144494564 - AluJo SINE Alu -22 290 1 662 242 50 6 chr4 39794121 39794282 -144494380 - HsTC2 DNA Tc2 -1012 886 719 5184 112 66 2 chr4 39794289 39794945 -144493717 + L1PB4 LINE L1 5126 5864 -292 237 33 0 0 chr4 39794945 39794975 -144493687 + (CA)n Simple_repeat Simple_repeat 2 31 0 5184 112 66 2 chr4 39794975 39795276 -144493386 + L1PB4 LINE L1 5864 6144 -12 410 309 48 19 chr4 39795303 39795510 -144493152 - HsTC2 DNA Tc2 -1171 727 515 1598 192 0 24 chr4 39795947 39796244 -144492418 + AluJo SINE Alu 3 292 -20 244 179 13 64 chr4 39797372 39797450 -144491212 - MIR SINE MIR -123 139 66 2240 92 0 3 chr4 39797640 39797944 -144490718 - AluSg SINE Alu 0 303 1 1080 77 7 0 chr4 39798209 39798352 -144490310 + L1PA10 LINE L1 6019 6162 -6 1984 138 3 16 chr4 39798568 39798872 -144489790 + AluJb SINE Alu 9 308 -4 33 25 0 0 chr4 39798886 39798926 -144489736 + AT_rich Low_complexity Low_complexity 1 40 0 2179 112 0 20 chr4 39799339 39799642 -144489020 + AluSg SINE Alu 1 297 -13 1547 129 4 4 chr4 39799955 39800180 -144488482 + AluSg/x SINE Alu 75 299 -13 2061 125 26 0 chr4 39800190 39800495 -144488167 + AluSq SINE Alu 1 313 0 1195 149 9 167 chr4 39800743 39801091 -144487571 - AluJo SINE Alu -9 293 1 265 203 39 12 chr4 39801099 39801208 -144487454 - L1MC/D LINE L1 -303 5818 5704 669 154 12 118 chr4 39801209 39801332 -144487330 + AluJo SINE Alu 1 103 -209 1966 144 7 7 chr4 39801332 39801637 -144487025 - AluSx SINE Alu -7 305 1 669 154 12 118 chr4 39801637 39801682 -144486980 + AluJo SINE Alu 103 151 -161 326 155 0 52 chr4 39801682 39801740 -144486922 + Alu SINE Alu 235 289 -13 37 39 0 0 chr4 39801747 39801798 -144486864 + AT_rich Low_complexity Low_complexity 1 51 0 425 284 84 55 chr4 39801882 39802192 -144486470 - L1MC/D LINE L1 -2199 5609 5291 904 173 130 0 chr4 39802225 39802410 -144486252 - MER3 DNA MER1_type 0 209 1 21 36 0 0 chr4 39802621 39802649 -144486013 + AT_rich Low_complexity Low_complexity 1 28 0 2133 95 19 35 chr4 39803595 39803910 -144484752 - AluSx SINE Alu -2 310 1 234 236 24 79 chr4 39804624 39804789 -144483873 + L1M LINE L1 5255 5410 -2398 830 164 0 0 chr4 39804893 39805027 -144483635 + AluJo SINE Alu 1 134 -178 19307 51 2 1 chr4 39805037 39807427 -144481235 + L1P LINE L1 1 2391 -3755 2250 122 3 0 chr4 39807579 39807891 -144480771 + AluSq SINE Alu 1 313 0 2331 97 0 0 chr4 39808520 39808820 -144479842 + AluY SINE Alu 1 300 -11 700 148 19 143 chr4 39809816 39810026 -144478636 + FAM SINE Alu 1 49 0 930 177 13 6 chr4 39810138 39810296 -144478366 - AluJb SINE Alu -18 294 136 2287 108 0 3 chr4 39810298 39810605 -144478057 - AluSx SINE Alu -6 306 1 481 275 27 54 chr4 39811414 39811563 -144477099 - MLT1K LTR MaLR -91 497 353 325 173 123 49 chr4 39811839 39811920 -144476742 + MIR SINE MIR 65 151 -111 1156 245 43 79 chr4 39813644 39813840 -144474822 - LTR16B LTR ERVL -8 456 254 230 0 33 0 chr4 39813840 39813870 -144474792 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 1933 103 33 0 chr4 39813872 39814143 -144474519 - AluSq SINE Alu -33 280 1 1156 245 43 79 chr4 39814143 39814412 -144474250 - LTR16B LTR ERVL -211 253 5 2344 98 7 0 chr4 39814533 39814839 -144473823 - AluSg SINE Alu -2 308 1 498 269 28 46 chr4 39814990 39815118 -144473544 - L1MC4 LINE L1 -1040 7002 6878 863 203 39 0 chr4 39815118 39815300 -144473362 - MER5A DNA MER1_type 0 189 1 498 269 28 46 chr4 39815300 39815387 -144473275 - L1MC4 LINE L1 -1164 6878 6791 2254 99 0 3 chr4 39816479 39816781 -144471881 + AluSg SINE Alu 8 308 -2 2051 263 132 6 chr4 39817588 39818292 -144470370 + L2 LINE L2 2153 2945 -369 263 343 50 30 chr4 39818284 39818383 -144470279 - L2 LINE L2 -4 3268 3168 * 733 244 83 65 chr4 39818413 39818533 -144470129 - MIR SINE MIR -21 241 125 2149 123 16 7 chr4 39818533 39818842 -144469820 + AluSx SINE Alu 1 312 0 733 244 83 65 chr4 39818842 39818951 -144469711 - MIR SINE MIR -137 125 8 1863 159 3 17 chr4 39819228 39819529 -144469133 - AluJb SINE Alu -15 297 1 2395 58 0 10 chr4 39819664 39819957 -144468705 + AluY SINE Alu 1 290 -21 1845 162 3 7 chr4 39819971 39820105 -144468557 + AluJb SINE Alu 1 134 -178 2329 100 7 0 chr4 39820105 39820405 -144468257 + AluSx SINE Alu 1 302 -10 1845 162 3 7 chr4 39820405 39820567 -144468095 + AluJb SINE Alu 134 296 -16 186 353 0 0 chr4 39821576 39821627 -144467035 - L2 LINE L2 -17 3255 3205 1750 229 91 47 chr4 39821647 39822206 -144466456 - MLT1E LTR MaLR 0 593 10 573 284 62 46 chr4 39822526 39822832 -144465830 - MLT1J LTR MaLR -130 381 71 494 316 31 31 chr4 39823039 39823232 -144465430 - MER117 DNA MER1_type -3 194 2 854 248 81 22 chr4 39823326 39823700 -144464962 - L1MEd LINE L1 -4814 1315 935 1260 227 106 12 chr4 39823747 39824077 -144464585 + L1MC/D LINE L1 5328 5688 -2120 27 0 0 0 chr4 39824147 39824174 -144464488 + AT_rich Low_complexity Low_complexity 1 27 0 683 307 89 22 chr4 39824184 39824454 -144464208 - L1MEd LINE L1 -5348 771 484 936 126 86 7 chr4 39824497 39824648 -144464014 - FRAM SINE Alu 0 166 4 505 310 39 0 chr4 39824745 39824948 -144463714 - L1MEd LINE L1 -5903 216 6 25 31 0 0 chr4 39825390 39825422 -144463240 + AT_rich Low_complexity Low_complexity 1 32 0 2369 92 3 0 chr4 39825466 39825772 -144462890 - AluSp SINE Alu -6 307 1 272 286 41 35 chr4 39825784 39825955 -144462707 + MER104 DNA Tc2 6 177 -3 198 250 0 0 chr4 39826808 39826848 -144461814 + L2 LINE L2 3255 3294 -19 366 339 76 35 chr4 39827309 39827625 -144461037 + L1MD2 LINE L1 1 329 -6211 3636 237 144 11 chr4 39828174 39829691 -144458971 + L1MD2 LINE L1 917 2615 -3925 2341 94 13 0 chr4 39829691 39829990 -144458672 - AluSx SINE Alu -9 303 1 3636 237 144 11 chr4 39829990 39830110 -144458552 + L1MD2 LINE L1 2615 2718 -3822 1109 145 5 16 chr4 39830149 39830335 -144458327 - MER2 DNA MER2_type -161 184 1 4373 231 57 21 chr4 39830335 39830901 -144457761 + L1MD2 LINE L1 2958 3503 -3037 1648 97 5 0 chr4 39830901 39831117 -144457545 + AluSg/x SINE Alu 82 298 -12 4373 231 57 21 chr4 39831117 39831786 -144456876 + L1MD2 LINE L1 3503 4250 -2290 1716 167 31 10 chr4 39831786 39832080 -144456582 + AluJo SINE Alu 2 301 -11 4373 231 57 21 chr4 39832080 39832237 -144456425 + L1MD2 LINE L1 4250 4400 -2140 1033 160 151 10 chr4 39832242 39832448 -144456214 + AluSg SINE Alu 1 235 -75 1059 108 0 0 chr4 39832452 39832591 -144456071 + AluJb SINE Alu 157 295 -17 3096 279 68 67 chr4 39832591 39833273 -144455389 + L1MD2 LINE L1 4399 5084 -1456 525 55 0 0 chr4 39833273 39833346 -144455316 + (GA)n Simple_repeat Simple_repeat 2 74 0 3096 279 68 67 chr4 39833346 39833860 -144454802 + L1MD2 LINE L1 5084 5596 -944 754 154 0 0 chr4 39833861 39833978 -144454684 + AluSq/x SINE Alu 1 117 -195 470 218 18 0 chr4 39833994 39834104 -144454558 + L1MD2 LINE L1 5579 5690 -850 340 257 66 37 chr4 39834104 39834240 -144454422 - L1MEc LINE L1 -4466 1930 1791 5412 163 52 21 chr4 39834245 39835282 -144453380 + L1MD2 LINE L1 5677 6745 -8 2322 100 0 0 chr4 39836125 39836424 -144452238 - AluSx SINE Alu -13 299 1 231 180 0 0 chr4 39836666 39836716 -144451946 - Alu SINE Alu 0 302 253 * 1767 148 0 0 chr4 39836715 39836979 -144451683 + Tigger3(Golem) DNA MER2_type 2775 3038 0 23 33 0 0 chr4 39837379 39837409 -144451253 + AT_rich Low_complexity Low_complexity 1 30 0 500 274 86 86 chr4 39837764 39838019 -144450643 + MIR SINE MIR 2 256 -6 22 99 0 0 chr4 39838309 39838380 -144450282 + AT_rich Low_complexity Low_complexity 1 71 0 2308 104 0 3 chr4 39839607 39839906 -144448756 + AluSx SINE Alu 2 299 -13 1510 149 65 7 chr4 39840731 39841006 -144447656 - L1MB4 LINE L1 0 6180 5890 490 250 153 53 chr4 39842527 39842755 -144445907 - Charlie8 DNA MER1_type -2152 265 15 240 348 22 44 chr4 39843182 39843317 -144445345 + L2 LINE L2 3141 3272 0 576 298 34 10 chr4 39843721 39843929 -144444733 - L1MC5 LINE L1 -47 7914 7702 2229 222 27 35 chr4 39843936 39844268 -144444394 - L1ME3 LINE L1 -2 6160 5832 2289 85 10 0 chr4 39844268 39844561 -144444101 - AluSq SINE Alu -17 296 1 2229 222 27 35 chr4 39844561 39844777 -144443885 - L1ME3 LINE L1 -330 5832 5616 1570 216 69 44 chr4 39844777 39844951 -144443711 - L1ME3 LINE L1 -878 5268 5100 1864 122 0 0 chr4 39844951 39845205 -144443457 + AluSq SINE Alu 56 309 -4 1570 216 69 44 chr4 39845205 39845534 -144443128 - L1ME3 LINE L1 -1046 5100 4752 2412 156 71 4 chr4 39845552 39846002 -144442660 - L1MB7 LINE L1 -220 5964 5485 462 259 25 25 chr4 39845978 39846136 -144442526 - L1MC5 LINE L1 -302 7659 7502 * 183 80 0 0 chr4 39846153 39846178 -144442484 + (TC)n Simple_repeat Simple_repeat 2 26 0 549 222 151 16 chr4 39846223 39846408 -144442254 - L1MC5 LINE L1 -492 7469 7260 2260 118 0 10 chr4 39846437 39846750 -144441912 - AluSx SINE Alu -2 310 1 1031 191 206 65 chr4 39846761 39847086 -144441576 - MLT1A2 LTR MaLR 0 374 4 1617 105 56 49 chr4 39847135 39847401 -144441261 - AluSq SINE Alu -45 268 1 234 276 0 0 chr4 39847475 39847533 -144441129 - L1MC4 LINE L1 -787 7255 7198 433 41 0 0 chr4 39847534 39847583 -144441079 + MER30 DNA MER1_type 3 51 -179 250 292 11 22 chr4 39847633 39847722 -144440940 - MLT1K LTR MaLR -362 226 139 483 276 64 13 chr4 39848145 39848301 -144440361 - MIR3 SINE MIR -3 205 42 1667 144 59 0 chr4 39848380 39848650 -144440012 - AluJo SINE Alu -26 286 1 218 154 103 0 chr4 39848910 39848949 -144439713 + L2 LINE L2 3222 3264 -8 307 335 74 4 chr4 39849324 39849581 -144439081 + L2 LINE L2 1830 2104 -1210 2422 81 3 0 chr4 39849753 39850050 -144438612 + AluSp SINE Alu 1 298 -15 381 211 0 0 chr4 39850114 39850190 -144438472 - MER53 DNA DNA -113 76 1 613 276 133 0 chr4 39850199 39850395 -144438267 - MIR SINE MIR -39 223 2 2198 118 0 3 chr4 39851032 39851329 -144437333 - AluSx SINE Alu -16 296 1 202 333 42 0 chr4 39851333 39851405 -144437257 + L2 LINE L2 2226 2300 -1014 2425 93 0 0 chr4 39851602 39851903 -144436759 + AluSc SINE Alu 1 301 -8 1727 103 22 0 chr4 39852386 39852609 -144436053 + MER30 DNA MER1_type 1 228 -2 2285 109 3 0 chr4 39852913 39853217 -144435445 + AluSx SINE Alu 1 305 -7 420 266 18 9 chr4 39853404 39853517 -144435145 - MIR3 SINE MIR -13 195 82 589 215 21 14 chr4 39853808 39853952 -144434710 + MIR SINE MIR 108 252 -10 284 304 72 24 chr4 39854799 39854924 -144433738 - L2 LINE L2 -5 3267 3137 187 320 112 50 chr4 39855235 39855672 -144432990 - L2 LINE L2 -454 2860 2397 1115 171 180 13 chr4 39855675 39855914 -144432748 + AluSg1 SINE Alu 1 279 -30 251 235 25 49 chr4 39856298 39856379 -144432283 + L1MC4a LINE L1 5848 5926 -1882 2191 114 3 7 chr4 39856490 39856788 -144431874 - AluSx SINE Alu -15 297 1 2298 96 0 7 chr4 39857006 39857307 -144431355 - AluSx SINE Alu -13 299 1 944 163 6 12 chr4 39857521 39857687 -144430975 + AluJo SINE Alu 126 290 -22 1028 219 40 0 chr4 39857906 39858107 -144430555 + MER3 DNA MER1_type 1 209 0 2161 198 59 28 chr4 39859300 39859845 -144428817 - MER68 LTR ERV1 0 562 1 1723 191 60 0 chr4 39860014 39860333 -144428329 - MER58B DNA MER1_type 0 341 4 448 235 56 29 chr4 39860374 39860575 -144428087 + L1ME LINE L1 5490 5694 -427 2317 117 0 0 chr4 39861167 39861466 -144427196 + AluSx SINE Alu 1 299 -13 593 280 96 8 chr4 39861474 39861735 -144426927 - MLT1J LTR MaLR -2 509 226 994 182 88 0 chr4 39862564 39862756 -144425906 - MER3 DNA MER1_type 0 209 1 2035 135 7 0 chr4 39863880 39864176 -144424486 + AluSx SINE Alu 1 298 -14 520 240 39 13 chr4 39865186 39865340 -144423322 - MLT1J LTR MaLR -315 196 39 276 309 73 6 chr4 39865349 39865514 -144423148 + L2 LINE L2 2316 2491 -823 373 226 0 29 chr4 39865699 39865801 -144422861 - L1P5 LINE L1 -571 5585 5487 2179 116 7 3 chr4 39865808 39866110 -144422552 - AluSx SINE Alu -9 303 1 787 193 25 54 chr4 39866110 39866234 -144422428 - L1M4 LINE L1 -835 5311 5196 943 148 0 15 chr4 39866234 39866369 -144422293 - FLAM_C SINE Alu 0 133 1 787 193 25 54 chr4 39866369 39866483 -144422179 - L1M4 LINE L1 -950 5196 5080 1658 176 15 0 chr4 39866484 39866746 -144421916 + AluJb SINE Alu 1 266 -46 850 136 25 0 chr4 39866787 39866905 -144421757 + FLAM_A SINE Alu 5 125 -8 901 201 46 0 chr4 39866908 39867102 -144421560 - L1M4 LINE L1 -1063 5083 4881 584 178 109 25 chr4 39867103 39867305 -144421357 - L1M4 LINE L1 -831 5315 5097 237 132 0 0 chr4 39867306 39867344 -144421318 + (TA)n Simple_repeat Simple_repeat 2 39 0 249 33 0 0 chr4 39867344 39867374 -144421288 + (GA)n Simple_repeat Simple_repeat 2 31 0 1426 210 95 9 chr4 39867593 39867940 -144420722 - MLT1E1 LTR MaLR -277 377 1 2294 212 139 31 chr4 39867949 39868070 -144420592 - L1M4 LINE L1 -1559 4587 4480 2325 97 3 0 chr4 39868070 39868368 -144420294 - AluSq SINE Alu -14 299 1 2294 212 139 31 chr4 39868368 39869089 -144419573 - L1M4 LINE L1 -1666 4480 3654 327 280 40 0 chr4 39869078 39869228 -144419434 - L1MDa LINE L1 -4147 2416 2261 * 809 235 176 20 chr4 39869290 39869986 -144418676 - L1MDa LINE L1 -4482 2081 1178 1972 155 0 10 chr4 39870002 39870312 -144418350 - AluJo SINE Alu -5 307 1 198 0 0 0 chr4 39870316 39870338 -144418324 + (A)n Simple_repeat Simple_repeat 1 22 0 914 217 6 17 chr4 39870574 39870749 -144417913 + FAM SINE Alu 1 173 -2 785 113 19 0 chr4 39875950 39876056 -144412606 + AluSg/x SINE Alu 186 293 -17 2230 102 7 0 chr4 39876203 39876498 -144412164 + AluSx SINE Alu 1 297 -15 2027 102 11 21 chr4 39878286 39878615 -144410047 - AluSq SINE Alu 0 326 1 633 185 196 0 chr4 39879577 39879750 -144408912 - MLT1D LTR MaLR -186 319 113 471 113 0 38 chr4 39879772 39879852 -144408810 + MLT1D LTR MaLR 429 505 0 2144 117 13 3 chr4 39880061 39880370 -144408292 + AluSx SINE Alu 1 312 0 1909 156 7 3 chr4 39880391 39880693 -144407969 + AluSx SINE Alu 1 303 -9 298 359 0 0 chr4 39881106 39881212 -144407450 - MIR SINE MIR -69 139 34 8459 12 0 0 chr4 39881920 39883273 -144405389 - L1PA2 LINE L1 0 6155 4803 1041 9 0 0 chr4 39883273 39883380 -144405282 - U6 snRNA snRNA 0 107 1 417 311 107 4 chr4 39883392 39883617 -144405045 - L1ME4a LINE L1 -197 5924 5677 1871 156 23 0 chr4 39883701 39884002 -144404660 + AluJb SINE Alu 1 308 -4 820 79 0 0 chr4 39884505 39884606 -144404056 + AluY SINE Alu 1 101 -210 3493 94 0 6 chr4 39884618 39885085 -144403577 + MER9 LTR ERVK 40 503 -8 1524 116 9 0 chr4 39885085 39885309 -144403353 + AluY SINE Alu 86 311 0 1081 126 0 0 chr4 39885433 39885615 -144403047 + AluSg/x SINE Alu 133 314 0 4948 123 41 39 chr4 39886099 39886480 -144402182 + L1MC1 LINE L1 5450 5829 -504 2069 123 16 7 chr4 39886480 39886789 -144401873 + AluSx SINE Alu 1 312 0 4948 123 41 39 chr4 39886789 39887245 -144401417 + L1MC1 LINE L1 5829 6288 -45 326 100 0 20 chr4 39887267 39887317 -144401345 - AluSq/x SINE Alu -198 105 57 809 161 8 0 chr4 39887334 39887458 -144401204 + FLAM_C SINE Alu 2 126 -17 21 0 0 0 chr4 39888565 39888586 -144400076 + AT_rich Low_complexity Low_complexity 1 21 0 2392 85 7 0 chr4 39889128 39889422 -144399240 - AluSq SINE Alu -17 296 1 545 266 102 51 chr4 39889424 39889778 -144398884 - L1MC4a LINE L1 -1926 5882 5511 214 270 34 56 chr4 39890346 39890435 -144398227 + L2 LINE L2 3185 3271 -1 1936 156 0 7 chr4 39890992 39891293 -144397369 + AluSx SINE Alu 1 299 -13 23 0 0 0 chr4 39891566 39891589 -144397073 + AT_rich Low_complexity Low_complexity 1 23 0 406 219 39 101 chr4 39892648 39892826 -144395836 + MIR SINE MIR 24 190 -72 2019 129 0 4 chr4 39893103 39893413 -144395249 + AluSg SINE Alu 1 309 0 23 0 0 0 chr4 39893522 39893545 -144395117 + AT_rich Low_complexity Low_complexity 1 23 0 484 313 51 63 chr4 39893869 39894220 -144394442 + L2 LINE L2 2926 3272 0 2221 166 58 7 chr4 39895035 39895498 -144393164 + L1MB7 LINE L1 5677 6163 -21 1899 195 67 50 chr4 39895529 39896093 -144392569 + L1MC4a LINE L1 7138 7711 -97 2080 132 3 7 chr4 39896528 39896823 -144391839 + AluSx SINE Alu 1 294 -18 252 167 37 0 chr4 39897670 39897724 -144390938 + MLT1J LTR MaLR 111 166 -345 289 246 329 6 chr4 39897804 39897971 -144390691 + MLT1L LTR MaLR 306 526 -89 557 306 68 42 chr4 39900021 39900328 -144388334 + L2 LINE L2 158 472 -2842 1770 292 126 47 chr4 39900488 39901619 -144387043 + L2 LINE L2 1553 2852 -461 2249 93 3 3 chr4 39901619 39901920 -144386742 + AluSp SINE Alu 1 301 -12 1770 292 126 47 chr4 39901920 39902363 -144386299 + L2 LINE L2 2852 3259 -54 214 304 54 11 chr4 39903292 39903384 -144385278 - MER5A DNA MER1_type -26 163 68 2342 68 0 3 chr4 39903545 39903839 -144384823 + AluY SINE Alu 1 293 -18 264 372 0 0 chr4 39903934 39904012 -144384650 - MER5A DNA MER1_type 0 189 112 490 243 292 0 chr4 39904794 39904996 -144383666 - MIR SINE MIR 0 262 2 785 240 64 0 chr4 39904999 39905203 -144383459 + MIR SINE MIR 40 256 -6 554 134 0 80 chr4 39905339 39905451 -144383211 - Tigger7 DNA MER2_type 0 2491 2389 * 1473 194 4 8 chr4 39905446 39905714 -144382948 - Tigger7 DNA MER2_type -2220 267 1 2459 85 3 0 chr4 39905738 39906045 -144382617 + AluSp SINE Alu 1 308 -5 40 0 0 0 chr4 39907767 39907807 -144380855 + AT_rich Low_complexity Low_complexity 1 40 0 1516 179 12 8 chr4 39907837 39908094 -144380568 + AluJb SINE Alu 44 301 -11 941 191 0 0 chr4 39908304 39908466 -144380196 + FRAM SINE Alu 2 163 -3 1759 167 43 3 chr4 39908472 39908772 -144379890 + AluJb SINE Alu 1 312 0 23 0 0 0 chr4 39908881 39908904 -144379758 + AT_rich Low_complexity Low_complexity 1 23 0 232 363 0 12 chr4 39910299 39910379 -144378283 - L2 LINE L2 -16 3256 3178 2145 262 85 33 chr4 39910597 39911071 -144377591 + L2 LINE L2 1964 2412 -902 1966 149 0 0 chr4 39911071 39911353 -144377309 - AluJb SINE Alu -30 282 1 2145 262 85 33 chr4 39911353 39911614 -144377048 + L2 LINE L2 2412 2745 -569 1776 127 91 4 chr4 39911614 39911889 -144376773 + AluSg SINE Alu 1 299 -11 2145 262 85 33 chr4 39911889 39911939 -144376723 + L2 LINE L2 2745 2791 -523 22 0 0 0 chr4 39913078 39913100 -144375562 + AT_rich Low_complexity Low_complexity 1 22 0 1784 164 24 14 chr4 39913520 39913813 -144374849 + AluJb SINE Alu 1 296 -16 1115 262 196 12 chr4 39913936 39914618 -144374044 - L2 LINE L2 -13 3300 2502 234 0 0 0 chr4 39914798 39914824 -144373838 + (A)n Simple_repeat Simple_repeat 1 26 0 1500 143 23 53 chr4 39914890 39915026 -144373636 + AluJo SINE Alu 1 127 -185 1527 116 112 0 chr4 39915026 39915258 -144373404 + AluSx SINE Alu 49 306 -6 1500 143 23 53 chr4 39915258 39915387 -144373275 + AluJo SINE Alu 127 258 -54 2124 124 3 0 chr4 39915423 39915714 -144372948 + AluSx SINE Alu 1 292 -20 237 154 39 58 chr4 39915838 39915890 -144372772 - L2 LINE L2 -6 3266 3216 25 51 0 0 chr4 39915966 39916005 -144372657 + AT_rich Low_complexity Low_complexity 1 39 0 192 200 0 0 chr4 39916565 39916605 -144372057 + (TA)n Simple_repeat Simple_repeat 2 41 0 416 276 113 23 chr4 39917225 39917530 -144371132 + L1ME4a LINE L1 5704 6050 -71 2050 126 85 18 chr4 39917539 39917880 -144370782 + THE1B LTR MaLR 1 364 0 422 303 107 32 chr4 39918135 39918445 -144370217 - L3 LINE CR1 -41 1536 1204 910 110 24 0 chr4 39918506 39918633 -144370029 + FLAM_C SINE Alu 1 130 -13 222 309 95 0 chr4 39918794 39918878 -144369784 + MIR3 SINE MIR 113 204 -4 473 278 115 26 chr4 39918949 39919219 -144369443 + L1ME LINE L1 5529 5822 -299 23 0 0 0 chr4 39919887 39919910 -144368752 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr4 39921530 39921554 -144367108 + AT_rich Low_complexity Low_complexity 1 24 0 355 315 143 60 chr4 39921878 39922226 -144366436 + L3 LINE CR1 83 400 -1177 973 182 106 0 chr4 39922226 39922424 -144366238 - MER20 DNA MER1_type 0 219 1 355 315 143 60 chr4 39922424 39922697 -144365965 + L3 LINE CR1 400 756 -821 2460 73 3 0 chr4 39922763 39923065 -144365597 + AluSp SINE Alu 1 303 -10 342 0 0 0 chr4 39923106 39923144 -144365518 + (TG)n Simple_repeat Simple_repeat 2 39 0 24 0 0 0 chr4 39923158 39923182 -144365480 + AT_rich Low_complexity Low_complexity 1 24 0 979 163 27 5 chr4 39924079 39924300 -144364362 - Charlie5 DNA MER1_type 0 2623 2398 4451 185 34 8 chr4 39924316 39925394 -144363268 - L1MA9 LINE L1 -38 6274 5169 414 230 17 17 chr4 39925396 39925515 -144363147 - MER33 DNA MER1_type -265 59 1 578 259 32 60 chr4 39925645 39925830 -144362832 - MIR SINE MIR 0 262 83 333 67 0 0 chr4 39926078 39926123 -144362539 + LTR54 LTR ERV1 402 446 -64 1849 143 38 126 chr4 39928296 39928702 -144359960 - MLT1D LTR MaLR 0 505 159 2280 89 24 0 chr4 39928702 39928993 -144359669 - AluSx SINE Alu -14 298 1 1849 143 38 126 chr4 39928993 39929140 -144359522 - MLT1D LTR MaLR -346 159 1 223 279 0 0 chr4 39929185 39929228 -144359434 + L2 LINE L2 3251 3293 -20 2248 107 0 7 chr4 39929500 39929799 -144358863 + AluSx SINE Alu 1 297 -15 27 0 0 26 chr4 39930138 39930155 -144358507 + AT_rich Low_complexity Low_complexity 1 17 -20 1460 163 16 82 chr4 39930155 39930461 -144358201 + AluSx SINE Alu 5 290 -22 27 0 0 26 chr4 39930461 39930481 -144358181 + AT_rich Low_complexity Low_complexity 17 37 0 2032 112 24 20 chr4 39930693 39930987 -144357675 - AluSx SINE Alu -13 299 5 1553 80 0 0 chr4 39931197 39931385 -144357277 - AluY SINE Alu -18 293 106 963 172 20 44 chr4 39931414 39931618 -144357044 + MER20 DNA MER1_type 1 199 -20 2389 88 3 0 chr4 39931865 39932162 -144356500 + AluSp SINE Alu 1 298 -15 1090 240 35 35 chr4 39932413 39932755 -144355907 + L1ME LINE L1 292 633 -5437 1015 224 101 58 chr4 39932786 39933183 -144355479 + MLT2D LTR ERVL 1 414 0 2637 204 21 38 chr4 39933183 39933814 -144354848 + MLT1-int LTR MaLR 1 620 -751 342 167 97 0 chr4 39933815 39933887 -144354775 + AluSx SINE Alu 1 79 -223 200 430 18 0 chr4 39934063 39934177 -144354485 + MIR SINE MIR 37 152 -110 2205 91 10 0 chr4 39934325 39934623 -144354039 + AluY SINE Alu 1 301 -10 277 314 9 9 chr4 39935096 39935201 -144353461 + CT-rich Low_complexity Low_complexity 1 105 0 2887 123 119 4 chr4 39936262 39936758 -144351904 - MER41C LTR ERV1 -1 553 1 967 150 52 16 chr4 39936801 39936994 -144351668 + L1MC1 LINE L1 453 652 -5774 771 39 0 0 chr4 39936995 39937098 -144351564 + AluY SINE Alu 147 249 -62 1198 124 18 60 chr4 39937098 39937156 -144351506 + AluSx SINE Alu 85 144 -168 2150 91 10 19 chr4 39937156 39937465 -144351197 + AluSx SINE Alu 1 306 -6 1198 124 18 60 chr4 39937465 39937623 -144351039 + AluSx SINE Alu 144 292 -20 2041 168 20 18 chr4 39937624 39937776 -144350886 + L1MC1 LINE L1 647 797 -5629 2430 142 35 37 chr4 39937776 39938205 -144350457 - MSTC LTR MaLR 0 428 1 2041 168 20 18 chr4 39938205 39938493 -144350169 + L1MC1 LINE L1 797 1088 -5338 1331 178 68 25 chr4 39938494 39938820 -144349842 + L1MC1 LINE L1 1324 1663 -4763 1666 158 0 52 chr4 39939250 39939560 -144349102 + AluJo SINE Alu 1 294 -18 2387 121 101 49 chr4 39940060 39940653 -144348009 + L1MC1 LINE L1 1738 2361 -4065 1652 171 36 86 chr4 39940660 39940923 -144347739 + L1MC1 LINE L1 3049 3273 -3153 770 211 0 35 chr4 39940923 39941094 -144347568 - FRAM SINE Alu 0 166 2 1652 171 36 86 chr4 39941094 39941379 -144347283 + L1MC1 LINE L1 3273 3570 -2856 2187 115 0 3 chr4 39941451 39941756 -144346906 + AluSq SINE Alu 1 304 -9 6325 189 40 43 chr4 39941769 39943078 -144345584 + L1MC1 LINE L1 3779 5090 -1523 2273 111 0 0 chr4 39943078 39943376 -144345286 - AluSx SINE Alu -14 298 1 6325 189 40 43 chr4 39943376 39944788 -144343874 + L1MC1 LINE L1 5090 6485 -128 3635 174 84 12 chr4 39944793 39946209 -144342453 + L1MB7 LINE L1 4654 6173 -11 2315 59 0 7 chr4 39946457 39946773 -144341889 + AluSc SINE Alu 5 318 0 2010 121 3 3 chr4 39947592 39947874 -144340788 + AluSg SINE Alu 1 282 -28 324 0 0 0 chr4 39947874 39947910 -144340752 + (CAAT)n Simple_repeat Simple_repeat 2 37 0 723 273 102 64 chr4 39947912 39948429 -144340233 - MLT1G1 LTR MaLR -15 580 1 1608 103 0 0 chr4 39949075 39949278 -144339384 + AluSg/x SINE Alu 95 297 -15 4114 124 22 6 chr4 39949318 39949988 -144338674 - HSMAR2 DNA Mariner 0 1302 622 1968 153 0 20 chr4 39949999 39950294 -144338368 - AluSg SINE Alu -13 297 9 2118 157 16 0 chr4 39950307 39950677 -144337985 - HSMAR2 DNA Mariner -896 406 31 1607 191 3 10 chr4 39950677 39950975 -144337687 - AluJo SINE Alu -16 296 1 226 189 0 0 chr4 39951023 39951060 -144337602 - Alu SINE Alu -263 37 1 251 308 200 25 chr4 39951181 39951421 -144337241 - L2 LINE L2 -845 2469 2188 236 221 116 23 chr4 39951964 39952050 -144336612 + L2 LINE L2 3216 3309 -4 706 291 45 42 chr4 39952695 39953124 -144335538 - L1ME LINE L1 -454 5708 5263 2370 93 30 38 chr4 39953437 39953804 -144334858 - THE1B LTR MaLR 0 364 1 215 232 0 0 chr4 39953911 39953967 -144334695 + T-rich Low_complexity Low_complexity 1 56 0 22 0 0 0 chr4 39954174 39954196 -144334466 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr4 39954245 39954287 -144334375 + AT_rich Low_complexity Low_complexity 1 42 0 286 289 73 10 chr4 39954581 39954691 -144333971 + MIR SINE MIR 39 153 -63 354 178 14 27 chr4 39954985 39955058 -144333604 - MER5A DNA MER1_type -117 72 1 29 60 0 0 chr4 39955231 39955281 -144333381 + AT_rich Low_complexity Low_complexity 1 50 0 346 308 100 15 chr4 39955475 39955605 -144333057 + MIR SINE MIR 109 249 -13 289 234 21 21 chr4 39955869 39955963 -144332699 + L1MC5 LINE L1 7832 7925 -36 1253 165 4 48 chr4 39955969 39956199 -144332463 + AluJo SINE Alu 1 220 -92 284 125 0 0 chr4 39956199 39956247 -144332415 + AluJb SINE Alu 86 133 -169 186 43 0 0 chr4 39956263 39956286 -144332376 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 1139 147 0 6 chr4 39956290 39956460 -144332202 + AluSg/x SINE Alu 129 297 -15 197 237 0 0 chr4 39956490 39956528 -144332134 - L2 LINE L2 -6 3266 3229 292 300 93 47 chr4 39956629 39956779 -144331883 - L2 LINE L2 -212 3060 2904 655 106 106 0 chr4 39956944 39957057 -144331605 - L1MA10 LINE L1 -7 6327 6203 2329 109 0 0 chr4 39957700 39957994 -144330668 - AluSx SINE Alu -16 296 3 1361 197 26 68 chr4 39958716 39958962 -144329700 + L1MC4 LINE L1 7459 7714 -328 2487 82 0 0 chr4 39958962 39959265 -144329397 + AluSg SINE Alu 1 303 -7 1361 197 26 68 chr4 39959265 39959322 -144329340 + L1MC4 LINE L1 7714 7772 -270 1963 143 0 3 chr4 39959322 39959609 -144329053 + AluSx SINE Alu 1 286 -26 1361 197 26 68 chr4 39959609 39959731 -144328931 + L1MC4 LINE L1 7772 7867 -175 1456 256 68 0 chr4 39960054 39960512 -144328150 + MER90 LTR ERV1 1 489 -86 344 175 0 0 chr4 39960510 39960567 -144328095 - AluSg/x SINE Alu -88 214 158 * 295 107 286 0 chr4 39960567 39960623 -144328039 + MER90 LTR ERV1 477 548 -27 861 124 90 0 chr4 39960992 39961137 -144327525 - AluJ SINE Alu -18 294 137 3255 194 68 9 chr4 39961139 39961868 -144326794 - L1MB8 LINE L1 -296 5882 5036 2254 107 0 7 chr4 39961868 39962166 -144326496 + AluSq SINE Alu 1 296 -17 3255 194 68 9 chr4 39962166 39962634 -144326028 - L1MB8 LINE L1 -1142 5036 4597 658 190 183 0 chr4 39963245 39963382 -144325280 - AluJo SINE Alu -4 298 137 673 189 0 49 chr4 39963382 39963498 -144325164 - AluJo SINE Alu -176 136 27 1441 157 240 17 chr4 39963498 39963848 -144324814 - MSTA LTR MaLR 0 428 1 673 189 0 49 chr4 39963848 39963874 -144324788 - AluJo SINE Alu -285 27 1 22 35 0 0 chr4 39963997 39964026 -144324636 + AT_rich Low_complexity Low_complexity 1 29 0 2061 128 3 53 chr4 39964028 39964348 -144324314 + AluSx SINE Alu 1 304 -8 309 100 0 0 chr4 39964353 39964403 -144324259 - L1MB5 LINE L1 -8 6166 6117 2307 75 3 10 chr4 39964539 39964834 -144323828 - AluSq SINE Alu -20 293 1 939 183 0 0 chr4 39965115 39965268 -144323394 - FRAM SINE Alu -23 153 1 340 206 81 47 chr4 39965298 39965452 -144323210 - L1ME2 LINE L1 -298 5866 5696 2034 115 20 10 chr4 39965452 39965757 -144322905 - AluSx SINE Alu -4 308 1 2311 95 7 0 chr4 39965774 39966078 -144322584 - AluSc SINE Alu -3 306 1 219 248 23 105 chr4 39966099 39966232 -144322430 + MIR SINE MIR 4 147 -61 2282 84 3 13 chr4 39966988 39967286 -144321376 - AluSx SINE Alu -17 295 1 222 222 74 0 chr4 39967780 39967834 -144320828 + L3b LINE CR1 1526 1583 0 2365 47 56 19 chr4 39968141 39968462 -144320200 - L1PA8 LINE L1 0 6172 5840 2118 128 6 16 chr4 39969135 39969448 -144319214 - AluJb SINE Alu -2 310 1 342 0 0 0 chr4 39969780 39969818 -144318844 + (TG)n Simple_repeat Simple_repeat 1 38 0 28 0 0 0 chr4 39970207 39970235 -144318427 + AT_rich Low_complexity Low_complexity 1 28 0 2312 105 10 0 chr4 39970351 39970657 -144318005 + AluSx SINE Alu 1 309 -3 189 317 110 0 chr4 39970891 39970973 -144317689 - L2 LINE L2 -3 3310 3220 382 297 103 30 chr4 39971075 39971240 -144317422 + MER5B DNA MER1_type 2 178 0 3036 162 53 12 chr4 39971335 39971941 -144316721 + L1MB5 LINE L1 5544 6174 0 2223 105 3 7 chr4 39972005 39972311 -144316351 + AluSg SINE Alu 1 305 -5 2775 103 32 75 chr4 39972685 39972816 -144315846 + L1PB3 LINE L1 5654 5789 -365 778 145 8 0 chr4 39972816 39972933 -144315729 + FLAM_C SINE Alu 1 118 -15 2775 103 32 75 chr4 39972933 39973164 -144315498 + L1PB3 LINE L1 5789 5990 -164 2214 123 0 7 chr4 39973164 39973472 -144315190 + AluSx SINE Alu 1 306 -6 2775 103 32 75 chr4 39973472 39973631 -144315031 + L1PB3 LINE L1 5990 6154 0 2352 64 0 0 chr4 39973791 39974101 -144314561 + AluY SINE Alu 1 310 0 2377 244 61 26 chr4 39974630 39975396 -144313266 - L1MD2 LINE L1 -17 6342 5550 1410 75 6 0 chr4 39975465 39975638 -144313024 - AluSq SINE Alu -15 298 125 712 113 0 140 chr4 39976083 39976233 -144312429 - FLAM_C SINE Alu 0 133 5 2611 44 0 16 chr4 39976264 39976579 -144312083 + AluY SINE Alu 1 310 -1 2194 195 58 54 chr4 39977382 39977626 -144311036 - L1MC4 LINE L1 -142 7900 7658 2028 135 0 7 chr4 39977626 39977929 -144310733 - AluJb SINE Alu -11 301 1 2194 195 58 54 chr4 39977929 39978165 -144310497 - L1MC4 LINE L1 -384 7658 7424 2180 137 52 3 chr4 39978165 39978531 -144310131 - L1MC1 LINE L1 -5 6328 5945 2194 195 58 54 chr4 39978531 39978569 -144310093 - L1MC4 LINE L1 -618 7424 7388 2464 85 0 0 chr4 39978569 39978874 -144309788 - AluSq SINE Alu -8 305 1 2194 195 58 54 chr4 39978874 39979106 -144309556 - L1MC4 LINE L1 -654 7388 6997 5241 62 16 62 chr4 39979106 39979897 -144308765 - L1PA13 LINE L1 -4 6159 5405 890 185 83 11 chr4 39980348 39980613 -144308049 - L1P4 LINE L1 -626 5537 5254 1391 224 53 79 chr4 39980616 39980796 -144307866 - L1MC4 LINE L1 -1033 7009 6826 1715 148 14 14 chr4 39980796 39981073 -144307589 - AluJb SINE Alu -1 311 35 1391 224 53 79 chr4 39981073 39981459 -144307203 - L1MC4 LINE L1 -1216 6826 6458 2137 104 10 0 chr4 39981985 39982274 -144306388 + AluSx SINE Alu 1 292 -20 23 33 0 0 chr4 39982299 39982329 -144306333 + AT_rich Low_complexity Low_complexity 1 30 0 261 0 0 0 chr4 39982404 39982433 -144306229 + (CA)n Simple_repeat Simple_repeat 1 29 0 2339 94 0 0 chr4 39982520 39982817 -144305845 - AluSq SINE Alu -16 297 1 523 223 74 7 chr4 39982821 39982969 -144305693 + LTR41 LTR ERVL 5 162 -611 775 204 104 16 chr4 39983006 39983328 -144305334 + LTR40b LTR ERVL 77 447 -15 285 218 42 11 chr4 39983355 39983450 -144305212 + LTR41 LTR ERVL 684 795 0 425 222 23 55 chr4 39983956 39984127 -144304535 + MIR SINE MIR 40 244 -18 725 238 40 0 chr4 39984538 39984689 -144303973 - MER58A DNA MER1_type 0 162 6 26 0 0 0 chr4 39984827 39984853 -144303809 + AT_rich Low_complexity Low_complexity 1 26 0 844 131 0 8 chr4 39984854 39984976 -144303686 - FLAM_C SINE Alu -10 133 13 36 53 0 0 chr4 39985329 39985386 -144303276 + AT_rich Low_complexity Low_complexity 1 57 0 1870 181 3 0 chr4 39985801 39986110 -144302552 - AluSx SINE Alu 0 312 3 481 296 57 96 chr4 39986259 39986527 -144302135 - L1MEd LINE L1 -5700 419 173 2079 133 13 3 chr4 39986527 39986828 -144301834 - AluJb SINE Alu -6 306 3 481 296 57 96 chr4 39986828 39986995 -144301667 - L1MEd LINE L1 -5946 173 1 1878 155 0 29 chr4 39987286 39987596 -144301066 + AluJb SINE Alu 1 301 -11 275 306 174 49 chr4 39987782 39987886 -144300776 + MER5B DNA MER1_type 17 145 -33 3621 112 4 4 chr4 39987886 39988397 -144300265 + MER9 LTR ERVK 1 511 0 275 306 174 49 chr4 39988397 39988436 -144300226 + MER5B DNA MER1_type 145 178 0 208 267 0 0 chr4 39988568 39988613 -144300049 - MIR3 SINE MIR -16 192 148 1199 148 10 5 chr4 39988728 39988930 -144299732 + L1PA16 LINE L1 5953 6155 -11 2152 84 0 84 chr4 39988930 39989251 -144299411 + AluSg SINE Alu 1 294 -16 1748 130 65 24 chr4 39989464 39989756 -144298906 - AluJo SINE Alu -7 305 2 21 36 0 0 chr4 39989908 39989936 -144298726 + AT_rich Low_complexity Low_complexity 1 28 0 1585 155 7 63 chr4 39990678 39990981 -144297681 + AluJo SINE Alu 6 291 -21 1552 141 72 4 chr4 39991107 39991369 -144297293 - AluJo SINE Alu -17 295 16 2018 118 0 19 chr4 39991404 39991727 -144296935 - MER84 LTR ERVI -190 317 1 188 282 0 0 chr4 39992308 39992347 -144296315 - L2 LINE L2 -9 3263 3225 7824 189 43 25 chr4 39992628 39995330 -144293332 - L1MB5 LINE L1 -59 6115 3366 2265 76 6 28 chr4 39995599 39995916 -144292746 - AluY SINE Alu -1 310 1 731 265 85 18 chr4 39995951 39996174 -144292488 + MIR SINE MIR 19 256 -6 1944 137 10 3 chr4 39998828 39999134 -144289528 - AluSx SINE Alu -4 308 1 2280 102 0 0 chr4 39999671 39999965 -144288697 - AluSq SINE Alu -19 294 1 682 243 85 11 chr4 40000102 40000291 -144288371 + MIR SINE MIR 47 249 -13 1887 130 53 3 chr4 40000362 40000646 -144288016 - AluSx SINE Alu -14 298 1 1365 147 8 66 chr4 40001140 40001304 -144287358 - AluJo SINE Alu -30 282 137 2181 118 0 3 chr4 40001304 40001609 -144287053 + AluSg SINE Alu 1 304 -6 1365 147 8 66 chr4 40001609 40001702 -144286960 - AluJo SINE Alu -175 137 40 2344 99 0 7 chr4 40002084 40002388 -144286274 - AluSg SINE Alu -8 302 1 1475 183 183 35 chr4 40003931 40004329 -144284333 + MSTB2 LTR MaLR 1 457 0 245 285 44 38 chr4 40004488 40004646 -144284016 + L2 LINE L2 2745 2903 -411 228 234 160 21 chr4 40005039 40005133 -144283529 + MSTB2 LTR MaLR 202 308 -149 296 284 0 0 chr4 40005496 40005563 -144283099 - HsTC2 DNA Tc2 -1 1897 1831 235 81 27 0 chr4 40005592 40005629 -144283033 - HsTC2 DNA Tc2 -175 1723 1686 386 244 185 0 chr4 40005636 40005755 -144282907 - HsTC2 DNA Tc2 -1757 141 1 429 256 169 17 chr4 40005813 40005985 -144282677 - MIR SINE MIR -6 256 59 649 225 54 0 chr4 40007015 40007144 -144281518 + MIR SINE MIR 4 139 -123 28 29 0 0 chr4 40007453 40007488 -144281174 + AT_rich Low_complexity Low_complexity 1 35 0 1886 149 0 30 chr4 40007671 40007972 -144280690 + AluJb SINE Alu 1 292 -20 1289 125 0 11 chr4 40008489 40008673 -144279989 + AluSq SINE Alu 38 219 -94 586 124 7 109 chr4 40008673 40008810 -144279852 + AluSg/x SINE Alu 188 310 -2 2216 103 0 10 chr4 40008839 40009140 -144279522 + AluSx SINE Alu 1 298 -14 282 238 69 39 chr4 40009173 40009254 -144279408 - MIR3 SINE MIR -52 156 73 31 68 0 0 chr4 40010363 40010422 -144278240 + AT_rich Low_complexity Low_complexity 1 59 0 180 77 0 0 chr4 40011023 40011049 -144277613 + (TGGG)n Simple_repeat Simple_repeat 4 29 0 2203 130 0 0 chr4 40011090 40011398 -144277264 + AluSx SINE Alu 1 308 -4 996 212 125 23 chr4 40011406 40011670 -144276992 + AluJo SINE Alu 1 291 -11 1023 242 147 58 chr4 40011915 40012430 -144276232 - L2 LINE L2 -1 3312 2733 261 0 0 0 chr4 40012665 40012694 -144275968 + (TG)n Simple_repeat Simple_repeat 2 30 0 451 217 17 11 chr4 40012694 40012869 -144275793 + (TA)n Simple_repeat Simple_repeat 2 177 0 1770 193 0 0 chr4 40012985 40013281 -144275381 + AluJb SINE Alu 1 296 -16 2289 92 3 0 chr4 40013369 40013661 -144275001 + AluSc SINE Alu 1 293 -16 500 323 54 79 chr4 40013786 40014155 -144274507 - L3 LINE CR1 -431 1146 787 1656 142 32 79 chr4 40014437 40014753 -144273909 - AluJb SINE Alu -11 301 1 21 0 0 0 chr4 40015245 40015266 -144273396 + AT_rich Low_complexity Low_complexity 1 21 0 270 220 0 0 chr4 40015270 40015329 -144273333 + L2 LINE L2 2799 2857 -457 901 296 104 50 chr4 40015367 40016029 -144272633 - L2 LINE L2 -1213 2101 1404 342 256 49 0 chr4 40016437 40016519 -144272143 + L1MC4 LINE L1 6618 6703 -1339 309 51 0 0 chr4 40016520 40016559 -144272103 + (TG)n Simple_repeat Simple_repeat 2 40 0 1980 149 10 3 chr4 40016576 40016871 -144271791 - AluSx SINE Alu -15 297 1 384 22 0 0 chr4 40017290 40017335 -144271327 + (TA)n Simple_repeat Simple_repeat 2 46 0 330 353 16 1 chr4 40017822 40018010 -144270652 + MIR SINE MIR 38 252 -10 482 306 75 57 chr4 40018741 40019006 -144269656 - L2 LINE L2 -232 3081 2812 1966 117 0 18 chr4 40019165 40019446 -144269216 - AluSx SINE Alu -23 289 14 346 206 143 40 chr4 40019470 40019596 -144269066 - L1MC4 LINE L1 -33 8009 7871 574 98 0 0 chr4 40019597 40019679 -144268983 + AluY SINE Alu 1 82 -228 594 181 9 0 chr4 40019779 40019884 -144268778 - AluSq/x SINE Alu -207 106 1 3713 208 75 6 chr4 40019885 40020781 -144267881 - L1MC4 LINE L1 -269 7773 6816 354 201 7 50 chr4 40021245 40021384 -144267278 + L1ME4a LINE L1 5984 6116 -5 208 158 0 53 chr4 40021642 40021699 -144266963 + A-rich Low_complexity Low_complexity 2 55 0 21 71 0 0 chr4 40021836 40021878 -144266784 + AT_rich Low_complexity Low_complexity 1 42 0 294 305 23 40 chr4 40021906 40022083 -144266579 - L1MC4 LINE L1 -1904 5904 5731 273 196 0 0 chr4 40022085 40022141 -144266521 + (TA)n Simple_repeat Simple_repeat 1 56 0 236 209 0 15 chr4 40022254 40022321 -144266341 + (TATG)n Simple_repeat Simple_repeat 4 69 0 898 299 160 39 chr4 40022388 40023759 -144264903 - L1MC4 LINE L1 -608 5554 4020 2128 112 7 7 chr4 40023815 40024109 -144264553 - AluSx SINE Alu -18 294 1 3135 208 63 12 chr4 40024218 40024982 -144263680 - L1MB7 LINE L1 -11 6173 5371 1777 129 7 52 chr4 40025748 40026058 -144262604 + AluJo SINE Alu 1 296 -16 1462 167 0 72 chr4 40026335 40026446 -144262216 + AluJb SINE Alu 27 144 -168 2269 116 0 3 chr4 40026446 40026748 -144261914 + AluSx SINE Alu 1 301 -11 1462 167 0 72 chr4 40026748 40026929 -144261733 + AluJb SINE Alu 144 298 -14 2239 100 3 3 chr4 40026985 40027284 -144261378 + AluSq SINE Alu 1 299 -14 922 198 33 0 chr4 40027869 40028051 -144260611 - MER5A DNA MER1_type -1 188 1 703 341 90 34 chr4 40028371 40028907 -144259755 + L2 LINE L2 2366 2931 -383 294 278 111 11 chr4 40029193 40029283 -144259379 + MIR3 SINE MIR 3 101 -107 286 345 60 0 chr4 40029338 40029454 -144259208 + MIR3 SINE MIR 85 207 -1 286 250 112 35 chr4 40030184 40030300 -144258362 - MIR SINE MIR -74 188 64 2279 120 0 0 chr4 40030523 40030832 -144257830 + AluSx SINE Alu 1 309 -3 351 274 40 50 chr4 40032628 40032829 -144255833 + L1ME LINE L1 5576 5774 -347 220 261 116 0 chr4 40033370 40033439 -144255223 - MIR SINE MIR -95 113 37 293 286 0 0 chr4 40034425 40034502 -144254160 - MIR SINE MIR -27 235 159 597 68 57 0 chr4 40034943 40035031 -144253631 - L1PA13 LINE L1 -5 6158 6066 923 165 0 35 chr4 40036049 40036219 -144252443 - FRAM SINE Alu -15 161 1 23 0 0 0 chr4 40036967 40036990 -144251672 + AT_rich Low_complexity Low_complexity 1 23 0 30 27 0 0 chr4 40037110 40037147 -144251515 + AT_rich Low_complexity Low_complexity 1 37 0 1906 154 10 0 chr4 40037197 40037489 -144251173 - AluSx SINE Alu -17 295 1 23 78 0 0 chr4 40037553 40037604 -144251058 + AT_rich Low_complexity Low_complexity 1 51 0 495 227 163 5 chr4 40037679 40037882 -144250780 - L1ME LINE L1 -594 5576 5342 216 0 0 0 chr4 40037882 40037906 -144250756 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 1174 281 78 17 chr4 40037911 40038630 -144250032 - L2 LINE L2 -12 3301 2534 1834 135 0 24 chr4 40038811 40039321 -144249341 - AluSx SINE Alu 0 503 1 3741 77 7 75 chr4 40038826 40039331 -144249331 - L1PB1 LINE L1 -1 6150 5997 2145 119 3 0 chr4 40039331 40039624 -144249038 - AluSg SINE Alu -16 294 1 3741 77 7 75 chr4 40039624 40040004 -144248658 - L1PB1 LINE L1 -154 5997 5593 2203 145 13 26 chr4 40040032 40040253 -144248409 - L1PB1 LINE L1 -542 5609 5387 2437 63 0 13 chr4 40040253 40040553 -144248109 - AluY SINE Alu -15 296 1 2203 145 13 26 chr4 40040553 40040923 -144247739 - L1PB1 LINE L1 -764 5387 5030 2277 109 3 0 chr4 40042372 40042675 -144245987 - AluSp SINE Alu -5 308 5 419 283 70 108 chr4 40042687 40043002 -144245660 - L3 LINE CR1 -905 672 370 239 296 49 0 chr4 40043021 40043102 -144245560 - MIR SINE MIR -67 141 57 512 185 33 0 chr4 40043105 40043197 -144245465 + MLT1J2 LTR MaLR 6 100 -350 1933 102 0 79 chr4 40043785 40044089 -144244573 + AluSc SINE Alu 23 302 -7 208 331 42 0 chr4 40044522 40044625 -144244037 - MER5B DNA MER1_type -26 163 46 1213 208 47 15 chr4 40044641 40044999 -144243663 - L1MA6 LINE L1 -11 6289 5933 1059 164 72 0 chr4 40045068 40045263 -144243399 - MER3 DNA MER1_type 0 209 1 485 296 34 48 chr4 40045264 40045470 -144243192 + MIR SINE MIR 32 234 -28 404 279 53 10 chr4 40047194 40047402 -144241260 + L1ME4a LINE L1 5641 5857 -264 1571 271 27 7 chr4 40047531 40047945 -144240717 + MLT1K LTR MaLR 161 582 -6 370 229 112 22 chr4 40047966 40048145 -144240517 + L1ME4a LINE L1 5879 6073 -48 309 51 0 0 chr4 40048162 40048205 -144240457 + (TG)n Simple_repeat Simple_repeat 1 82 0 309 51 0 0 chr4 40048205 40048244 -144240418 + (TG)n Simple_repeat Simple_repeat 2 40 0 859 263 134 37 chr4 40048346 40048802 -144239860 + MLT1J LTR MaLR 12 511 0 401 237 53 9 chr4 40049053 40049167 -144239495 + LTR67 LTR ERVL 439 557 0 324 0 0 0 chr4 40049224 40049260 -144239402 + (CA)n Simple_repeat Simple_repeat 1 36 0 2126 127 0 23 chr4 40049715 40050022 -144238640 + AluSx SINE Alu 1 300 -12 2938 155 19 8 chr4 40050261 40050795 -144237867 + L1MC3 LINE L1 7246 7785 0 682 198 73 57 chr4 40050798 40050975 -144237687 + MIR SINE MIR 62 241 -21 322 200 0 0 chr4 40051006 40051066 -144237596 - Tigger5 DNA MER2_type 0 2323 2264 * 354 171 13 26 chr4 40051062 40051138 -144237524 + Tigger5 DNA MER2_type 2242 2316 -7 278 192 0 0 chr4 40051141 40051193 -144237469 - Tigger5 DNA MER2_type -2244 79 28 2324 88 7 0 chr4 40052044 40052341 -144236321 + AluSx SINE Alu 1 299 -13 26 0 0 0 chr4 40053408 40053434 -144235228 + AT_rich Low_complexity Low_complexity 1 26 0 26 30 0 0 chr4 40054574 40054607 -144234055 + AT_rich Low_complexity Low_complexity 1 33 0 282 278 90 38 chr4 40057179 40057231 -144231431 + MER20B DNA MER1_type 4 52 -731 351 0 0 0 chr4 40057231 40057270 -144231392 + (TGG)n Simple_repeat Simple_repeat 2 40 0 282 278 90 38 chr4 40057270 40057350 -144231312 + MER20B DNA MER1_type 52 143 -640 353 267 164 45 chr4 40057502 40057794 -144230868 - L1MC4a LINE L1 -1879 5929 5603 1259 182 0 0 chr4 40057794 40057992 -144230670 - AluY SINE Alu -11 300 103 1902 110 0 4 chr4 40057992 40058247 -144230415 - AluSx SINE Alu -58 254 1 500 226 77 10 chr4 40058252 40058460 -144230202 - L1MC4a LINE L1 -679 5483 5262 791 248 128 16 chr4 40058685 40058935 -144229727 + L2 LINE L2 3036 3313 0 31 76 0 0 chr4 40058987 40059053 -144229609 + AT_rich Low_complexity Low_complexity 1 66 0 1546 173 59 0 chr4 40059089 40059361 -144229301 - AluJb SINE Alu -24 288 1 224 308 77 0 chr4 40060014 40060092 -144228570 + MIR3 SINE MIR 106 189 -19 22 35 0 0 chr4 40060501 40060530 -144228132 + AT_rich Low_complexity Low_complexity 1 29 0 234 341 186 21 chr4 40060638 40061010 -144227652 - L2 LINE L2 -570 2744 2312 1461 174 87 0 chr4 40061311 40061564 -144227098 + AluSx SINE Alu 1 275 -37 22 0 0 0 chr4 40061894 40061916 -144226746 + AT_rich Low_complexity Low_complexity 1 22 0 342 220 211 0 chr4 40063034 40063143 -144225519 + MIR3 SINE MIR 8 139 -69 270 329 48 72 chr4 40063243 40063410 -144225252 - MIR SINE MIR -50 212 50 227 274 121 24 chr4 40063465 40063589 -144225073 - MIR SINE MIR -63 199 64 203 354 52 66 chr4 40065061 40065273 -144223389 + L2 LINE L2 2669 2877 -437 1892 127 7 11 chr4 40065292 40065599 -144223063 + AluSg SINE Alu 1 306 0 180 0 0 0 chr4 40065977 40065997 -144222665 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2155 116 0 10 chr4 40067615 40067917 -144220745 - AluSx SINE Alu -13 299 1 238 291 0 81 chr4 40067917 40067966 -144220696 + L2 LINE L2 3189 3231 -41 1317 192 10 54 chr4 40067966 40068298 -144220364 - AluJb SINE Alu 0 319 1 238 291 0 81 chr4 40068298 40068333 -144220329 + L2 LINE L2 3231 3267 -5 943 236 80 58 chr4 40068583 40068760 -144219902 + MLT1I LTR MaLR 3 175 -234 2314 105 7 0 chr4 40068760 40069065 -144219597 + AluSq SINE Alu 3 309 -4 943 236 80 58 chr4 40069065 40069285 -144219377 + MLT1I LTR MaLR 175 409 0 290 326 95 0 chr4 40069699 40069846 -144218816 - MIR SINE MIR -101 161 1 2246 112 0 0 chr4 40070272 40070568 -144218094 - AluSx SINE Alu -16 296 1 282 220 121 21 chr4 40070608 40070749 -144217913 - MER103 DNA DNA -1 165 11 794 160 0 0 chr4 40071104 40071235 -144217427 - FLAM_C SINE Alu 0 133 3 407 322 132 58 chr4 40072335 40072919 -144215743 - L1M2 LINE L1 -5450 1399 773 206 267 0 0 chr4 40073035 40073095 -144215567 + G-rich Low_complexity Low_complexity 2 61 0 200 333 14 14 chr4 40073578 40073647 -144215015 - L2 LINE L2 -76 3196 3128 2125 126 0 3 chr4 40074519 40074835 -144213827 + AluSc SINE Alu 1 309 0 719 229 254 22 chr4 40075003 40075369 -144213293 + L2 LINE L2 2863 3313 0 2015 142 0 0 chr4 40075517 40075812 -144212850 + AluSx SINE Alu 1 295 -17 2227 112 3 3 chr4 40076622 40076926 -144211736 - AluSc SINE Alu -5 304 1 1344 144 194 11 chr4 40077191 40077454 -144211208 - AluJo SINE Alu -1 311 1 366 337 67 70 chr4 40077876 40078334 -144210328 + L2 LINE L2 2692 3180 -92 303 28 0 0 chr4 40078346 40078382 -144210280 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 2231 62 0 78 chr4 40078738 40079059 -144209603 + AluY SINE Alu 1 296 -15 2131 92 43 13 chr4 40080297 40080600 -144208062 + AluSq SINE Alu 1 312 -1 1116 192 25 16 chr4 40080956 40081201 -144207461 - L1ME1 LINE L1 -5 6161 5915 425 316 55 73 chr4 40081204 40081476 -144207186 + L2 LINE L2 3042 3308 -5 1859 120 15 99 chr4 40081642 40081975 -144206687 + AluJb SINE Alu 1 305 -7 283 238 0 159 chr4 40082069 40082125 -144206537 + MIR SINE MIR 136 199 -63 712 111 86 0 chr4 40082125 40082242 -144206420 + L1PB1 LINE L1 6025 6151 0 283 238 0 159 chr4 40082242 40082281 -144206381 + MIR SINE MIR 199 201 -61 704 172 16 160 chr4 40082281 40082379 -144206283 + MER20 DNA MER1_type 1 41 -178 1554 197 25 0 chr4 40082379 40082653 -144206009 + AluJo SINE Alu 1 281 -31 704 172 16 160 chr4 40082653 40082810 -144205852 + MER20 DNA MER1_type 41 219 0 283 238 0 159 chr4 40082810 40082864 -144205798 + MIR SINE MIR 201 262 0 591 318 35 10 chr4 40082945 40083143 -144205519 + MIR SINE MIR 48 250 -12 2289 111 0 3 chr4 40083903 40084210 -144204452 + AluSc SINE Alu 1 306 -3 250 294 42 7 chr4 40084345 40084488 -144204174 + L1ME LINE L1 5181 5328 -818 306 278 122 0 chr4 40084495 40084610 -144204052 + L1ME LINE L1 5352 5480 -641 1673 177 31 7 chr4 40084749 40085043 -144203619 - AluJo SINE Alu -11 301 1 2269 98 16 7 chr4 40085787 40086094 -144202568 - AluSg SINE Alu 0 310 1 207 133 0 0 chr4 40086930 40086975 -144201687 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 755 148 66 0 chr4 40087506 40087628 -144201034 - FLAM_A SINE Alu -2 131 2 30 27 0 0 chr4 40088518 40088555 -144200107 + AT_rich Low_complexity Low_complexity 1 37 0 184 280 140 10 chr4 40089160 40089260 -144199402 - L2 LINE L2 -49 3264 3152 2039 95 0 101 chr4 40089579 40089721 -144198941 + AluY SINE Alu 1 91 -220 2017 139 36 0 chr4 40089721 40090022 -144198640 + AluSx SINE Alu 1 312 0 2039 95 0 101 chr4 40090022 40090215 -144198447 + AluY SINE Alu 91 302 -9 2116 148 0 0 chr4 40090817 40091122 -144197540 - AluSx SINE Alu -7 305 1 573 129 0 32 chr4 40091410 40091503 -144197159 - FLAM_A SINE Alu -20 122 33 613 244 22 62 chr4 40091563 40091788 -144196874 + L2 LINE L2 3097 3312 -1 2203 110 10 0 chr4 40092400 40092701 -144195961 - AluSx SINE Alu -8 304 1 1199 207 70 83 chr4 40092888 40092940 -144195722 - L1ME2 LINE L1 -1 6161 6110 2649 90 21 3 chr4 40092940 40093319 -144195343 - L1PA13 LINE L1 -11 6152 5767 1199 207 70 83 chr4 40093319 40093433 -144195229 - L1ME2 LINE L1 -52 6110 5996 1987 127 3 0 chr4 40093433 40093744 -144194918 + AluSx SINE Alu 1 312 0 202 74 0 0 chr4 40093717 40093744 -144194918 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 1199 207 70 83 chr4 40093744 40093885 -144194777 - L1ME2 LINE L1 -166 5996 5855 2080 118 3 37 chr4 40093885 40094207 -144194455 - AluSx SINE Alu -1 311 1 1199 207 70 83 chr4 40094207 40094454 -144194208 - L1ME2 LINE L1 -307 5855 5622 1212 215 120 9 chr4 40094454 40094779 -144193883 - MLT1A1 LTR MaLR 0 365 5 333 280 127 26 chr4 40094779 40094879 -144193783 - L1MA6 LINE L1 -701 5599 5511 851 297 53 18 chr4 40095479 40095873 -144192789 + L1MEd LINE L1 502 909 -5296 3759 155 33 102 chr4 40095924 40096345 -144192317 + L1MA6 LINE L1 4941 5390 -910 1754 175 33 7 chr4 40096345 40096648 -144192014 - AluJo SINE Alu -1 311 1 3759 155 33 102 chr4 40096648 40096921 -144191741 + L1MA6 LINE L1 5390 5680 -620 2286 99 7 0 chr4 40096921 40097215 -144191447 + AluSc SINE Alu 1 296 -13 3759 155 33 102 chr4 40097215 40097238 -144191424 + L1MA6 LINE L1 5680 5703 -597 735 172 0 16 chr4 40097238 40097360 -144191302 + FLAM_A SINE Alu 5 124 -9 3759 155 33 102 chr4 40097360 40098090 -144190572 + L1MA6 LINE L1 5703 6292 -8 666 231 168 25 chr4 40098364 40098680 -144189982 + L1MEd LINE L1 983 1343 -4862 2518 85 0 0 chr4 40098720 40099026 -144189636 - AluSx SINE Alu -6 306 1 261 281 12 0 chr4 40099104 40099186 -144189476 + HAL1 LINE L1 1506 1588 -919 917 264 133 42 chr4 40099562 40100286 -144188376 + L1MEd LINE L1 2037 2694 -3521 2388 85 0 16 chr4 40100286 40100602 -144188060 + AluY SINE Alu 1 311 0 2414 104 28 3 chr4 40100611 40100966 -144187696 + THE1B LTR MaLR 1 364 0 917 264 133 42 chr4 40100966 40101365 -144187297 + L1MEd LINE L1 2701 3062 -3153 2120 129 7 3 chr4 40101365 40101674 -144186988 - AluSg SINE Alu 0 310 1 917 264 133 42 chr4 40101674 40101735 -144186927 + L1MEd LINE L1 3062 3116 -3099 1879 130 84 35 chr4 40101735 40102082 -144186580 - THE1B LTR MaLR 0 364 1 1802 212 75 37 chr4 40102083 40102564 -144186098 - MLT1D LTR MaLR -4 501 3 917 264 133 42 chr4 40102564 40102702 -144185960 + L1MEd LINE L1 3115 3451 -2764 22 70 0 0 chr4 40102931 40102974 -144185688 + AT_rich Low_complexity Low_complexity 1 43 0 2191 121 3 0 chr4 40102992 40103290 -144185372 - AluSx SINE Alu -13 299 1 983 203 14 9 chr4 40103647 40103864 -144184798 + MER58B DNA MER1_type 120 337 -4 2074 82 7 11 chr4 40104067 40104377 -144184285 + AluSc SINE Alu 1 309 0 1852 165 0 28 chr4 40104412 40104733 -144183929 - AluJb SINE Alu 0 312 1 2209 109 6 3 chr4 40104780 40105091 -144183571 - AluSx SINE Alu 0 312 1 1143 60 0 0 chr4 40105092 40105226 -144183436 - AluSq/x SINE Alu -178 134 1 9884 188 37 10 chr4 40105580 40105950 -144182712 - L1PA16 LINE L1 -20 6146 5787 2214 121 0 0 chr4 40105950 40106248 -144182414 - AluSg1 SINE Alu -3 306 9 9884 188 37 10 chr4 40106248 40109122 -144179540 - L1PA16 LINE L1 -379 5787 2821 1865 285 82 32 chr4 40109122 40109993 -144178669 + L1MEd LINE L1 3696 4522 -1693 1974 119 16 39 chr4 40109993 40110356 -144178306 + AluSc SINE Alu 1 309 0 1865 285 82 32 chr4 40110356 40110788 -144177874 + L1MEd LINE L1 4522 5090 -1125 1712 170 11 0 chr4 40110788 40110963 -144177699 - AluJb SINE Alu 0 309 128 249 33 0 0 chr4 40110963 40110993 -144177669 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1712 170 11 0 chr4 40110993 40111121 -144177541 - AluJb SINE Alu -181 128 3 1865 285 82 32 chr4 40111121 40111339 -144177323 + L1MEd LINE L1 5090 5296 -919 1153 105 6 12 chr4 40111457 40111678 -144176984 + AluSg/x SINE Alu 122 341 0 292 220 0 0 chr4 40111678 40111737 -144176925 + MLT1-int LTR MaLR 611 669 -702 287 261 0 0 chr4 40111742 40111811 -144176851 + MLT1-int LTR MaLR 819 887 -484 293 197 0 56 chr4 40111846 40111917 -144176745 + MLT-int LTR MaLR 678 744 -991 2131 226 19 11 chr4 40111981 40112449 -144176213 + MLT1A2-int LTR MaLR 1264 1735 0 598 256 17 23 chr4 40112449 40112625 -144176037 + MLT1A2 LTR MaLR 1 175 -199 312 222 0 12 chr4 40112694 40112775 -144175887 + MLT1A2 LTR MaLR 178 257 -108 1761 271 76 18 chr4 40112818 40112916 -144175746 + L1M4b LINE L1 1413 1504 -5634 2211 106 3 0 chr4 40112916 40113208 -144175454 + AluSp SINE Alu 1 293 -20 1761 271 76 18 chr4 40113208 40114151 -144174511 + L1M4b LINE L1 1504 2686 -4452 2522 62 0 3 chr4 40114167 40114474 -144174188 + AluY SINE Alu 6 311 0 810 236 7 17 chr4 40115298 40115591 -144173071 + AluY SINE Alu 22 311 0 2311 94 0 16 chr4 40115986 40116294 -144172368 + AluSx SINE Alu 1 303 -9 448 286 105 0 chr4 40116789 40116922 -144171740 + MIR SINE MIR 5 151 -111 189 0 0 0 chr4 40117334 40117355 -144171307 + (CA)n Simple_repeat Simple_repeat 2 22 0 1992 158 10 6 chr4 40117425 40117736 -144170926 + AluSx SINE Alu 1 312 0 662 208 23 0 chr4 40118943 40119073 -144169589 + FLAM_A SINE Alu 1 133 0 1910 162 7 0 chr4 40119106 40119403 -144169259 + AluSx SINE Alu 1 299 -13 351 0 0 0 chr4 40119404 40119443 -144169219 + (CA)n Simple_repeat Simple_repeat 2 40 0 1587 152 20 54 chr4 40119446 40119742 -144168920 + AluJo SINE Alu 1 286 -26 457 254 122 70 chr4 40119773 40120027 -144168635 + L1ME LINE L1 5280 5558 -563 2360 94 0 0 chr4 40120027 40120324 -144168338 + AluSc SINE Alu 1 297 -12 457 254 122 70 chr4 40120324 40120412 -144168250 + L1ME LINE L1 5558 5640 -481 2090 116 3 7 chr4 40120424 40120718 -144167944 + AluSg SINE Alu 1 293 -17 483 254 70 0 chr4 40121285 40121399 -144167263 - L2 LINE L2 0 3313 3192 2037 117 34 7 chr4 40121922 40122213 -144166449 - AluSg SINE Alu -11 299 1 2243 92 14 3 chr4 40122299 40122592 -144166070 + AluSp SINE Alu 1 296 -17 230 171 0 0 chr4 40122860 40122895 -144165767 - L2 LINE L2 -95 3218 3184 245 296 131 48 chr4 40123178 40123530 -144165132 + L2 LINE L2 2209 2589 -725 203 260 14 14 chr4 40123546 40123619 -144165043 - MIR SINE MIR -5 257 185 2624 88 9 50 chr4 40123619 40123854 -144164808 + L1PB1 LINE L1 5747 5959 -192 2471 61 0 0 chr4 40123854 40124147 -144164515 + AluY SINE Alu 8 300 -11 2624 88 9 50 chr4 40124147 40124332 -144164330 + L1PB1 LINE L1 5959 6150 -1 29 0 0 0 chr4 40124332 40124361 -144164301 + AT_rich Low_complexity Low_complexity 1 29 0 1965 131 3 48 chr4 40124391 40124525 -144164137 + AluSx SINE Alu 1 139 -173 1987 123 0 11 chr4 40124525 40124810 -144163852 + AluSx SINE Alu 1 282 -30 517 14 14 14 chr4 40124815 40124886 -144163776 + (TAAAA)n Simple_repeat Simple_repeat 2 72 0 1965 131 3 48 chr4 40124886 40125059 -144163603 + AluSx SINE Alu 143 300 -12 1972 126 0 0 chr4 40125413 40125684 -144162978 + AluSx SINE Alu 1 271 -41 225 0 0 0 chr4 40125691 40125716 -144162946 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 3477 195 78 19 chr4 40125773 40126073 -144162589 + L1M4 LINE L1 4053 4334 -1812 1919 71 61 11 chr4 40126073 40126353 -144162309 + AluY SINE Alu 1 294 -17 3477 195 78 19 chr4 40126353 40127022 -144161640 + L1M4 LINE L1 4334 5080 -1066 262 274 42 0 chr4 40128129 40128224 -144160438 - L1MC/D LINE L1 -1942 5866 5768 1912 148 16 16 chr4 40128318 40128628 -144160034 + AluSx SINE Alu 1 310 -2 907 193 12 12 chr4 40128647 40128813 -144159849 + FRAM SINE Alu 1 166 0 450 184 43 85 chr4 40129432 40129573 -144159089 - MIR SINE MIR -54 208 74 209 273 303 0 chr4 40129734 40129800 -144158862 + MIR SINE MIR 3 89 -119 207 0 0 0 chr4 40129867 40129890 -144158772 + (A)n Simple_repeat Simple_repeat 1 23 0 2139 92 7 7 chr4 40131432 40131727 -144156935 + AluSx SINE Alu 1 295 -17 279 238 191 0 chr4 40132141 40132225 -144156437 + MIR SINE MIR 31 130 -132 992 234 224 22 chr4 40132540 40132946 -144155716 + MLT1H1 LTR MaLR 66 553 -2 298 188 0 0 chr4 40132974 40133022 -144155640 + Alu SINE Alu 1 48 -254 5161 125 8 43 chr4 40133057 40133661 -144155001 - Tigger4(Zombi) DNA MER2_type -1489 1242 679 2085 97 0 0 chr4 40133661 40133930 -144154732 - AluSg SINE Alu -13 297 29 5161 125 8 43 chr4 40133930 40134237 -144154425 - Tigger4(Zombi) DNA MER2_type -2052 679 363 667 152 0 97 chr4 40134244 40134389 -144154273 + FLAM_C SINE Alu 1 131 -2 2221 136 0 0 chr4 40134521 40134823 -144153839 - AluSx SINE Alu -10 302 1 2227 119 22 38 chr4 40134836 40135206 -144153456 + THE1B LTR MaLR 1 364 0 12240 73 10 0 chr4 40135206 40136770 -144151892 + THE1B-int LTR MaLR 1 1580 0 2245 123 22 30 chr4 40136770 40137137 -144151525 + THE1B LTR MaLR 1 364 0 224 29 86 0 chr4 40137496 40137531 -144151131 + T-rich Low_complexity Low_complexity 2 39 0 819 125 0 0 chr4 40137531 40137651 -144151011 - FLAM_C SINE Alu -23 120 1 259 89 0 0 chr4 40137982 40138027 -144150635 - Alu SINE Alu 0 301 257 856 119 0 0 chr4 40138037 40138155 -144150507 - AluSq/x SINE Alu -194 119 2 2357 86 3 0 chr4 40138201 40138492 -144150170 + AluSp SINE Alu 1 292 -21 1716 156 7 30 chr4 40138890 40139185 -144149477 - AluSx SINE Alu -19 293 6 1149 65 179 6 chr4 40139314 40139482 -144149180 - AluYa8 SINE Alu -8 302 106 13318 141 18 20 chr4 40140885 40140951 -144147711 - L1MA2 LINE L1 -108 7615 7550 2062 71 93 0 chr4 40140951 40141220 -144147442 - AluSp SINE Alu -19 294 1 13318 141 18 20 chr4 40141220 40141463 -144147199 - L1MA2 LINE L1 -173 7550 7308 2382 100 0 0 chr4 40141463 40141764 -144146898 - AluSg SINE Alu -1 309 9 13318 141 18 20 chr4 40141764 40143288 -144145374 - L1MA2 LINE L1 -415 7308 5783 1685 106 80 4 chr4 40143288 40143590 -144145072 - AluSx SINE Alu 0 322 1 13318 141 18 20 chr4 40143590 40145635 -144143027 - L1MA2 LINE L1 -1940 5783 3741 1162 67 0 0 chr4 40145640 40145790 -144142872 - L1PA8 LINE L1 -104 6068 5919 * 18549 135 27 62 chr4 40145787 40146025 -144142637 - L1MA2 LINE L1 -4338 3227 2982 2150 117 0 17 chr4 40146025 40146325 -144142337 - AluSx SINE Alu -17 295 1 18549 135 27 62 chr4 40146325 40146976 -144141686 - L1MA2 LINE L1 -4583 2982 2310 2199 109 3 3 chr4 40146976 40147280 -144141382 + AluSp SINE Alu 1 304 -9 18549 135 27 62 chr4 40147280 40147369 -144141293 - L1MA2 LINE L1 -5255 2310 2219 1674 124 4 8 chr4 40147369 40147618 -144141044 - AluSp SINE Alu -60 253 6 18549 135 27 62 chr4 40147618 40149965 -144138697 - L1MA2 LINE L1 -5346 2219 17 1612 138 16 81 chr4 40149965 40150140 -144138522 - AluJo SINE Alu -13 299 153 2319 103 0 3 chr4 40150140 40150442 -144138220 - AluSg SINE Alu -9 301 1 1612 138 16 81 chr4 40150442 40150586 -144138076 - AluJo SINE Alu -159 153 1 1573 173 38 0 chr4 40150598 40150887 -144137775 - AluJo SINE Alu -2 310 11 27 29 0 0 chr4 40151043 40151077 -144137585 + AT_rich Low_complexity Low_complexity 1 34 0 2223 108 0 0 chr4 40151125 40151421 -144137241 - AluSq SINE Alu -17 296 1 3717 209 44 92 chr4 40151434 40152100 -144136562 + L1MC4a LINE L1 6568 7265 -543 2289 94 0 10 chr4 40152100 40152426 -144136236 + AluSc SINE Alu 1 323 0 3717 209 44 92 chr4 40152426 40152481 -144136181 + L1MC4a LINE L1 7265 7321 -487 2254 92 0 3 chr4 40152481 40152775 -144135887 + AluSg SINE Alu 1 293 -17 3717 209 44 92 chr4 40152775 40153389 -144135273 + L1MC4a LINE L1 7321 7808 0 835 138 9 0 chr4 40153474 40153590 -144135072 + FLAM_C SINE Alu 2 118 -15 2293 108 0 0 chr4 40153615 40153912 -144134750 + AluSg SINE Alu 1 297 -13 1860 147 0 13 chr4 40154026 40154326 -144134336 + AluJb SINE Alu 1 296 -16 878 221 0 17 chr4 40154392 40154564 -144134098 - FRAM SINE Alu -7 169 1 2555 257 93 33 chr4 40154582 40155480 -144133182 + L2 LINE L2 1997 2948 -366 194 0 0 37 chr4 40155748 40155775 -144132887 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 748 265 53 8 chr4 40156044 40156127 -144132535 + HAL1 LINE L1 1548 1626 -881 2134 108 11 0 chr4 40156127 40156457 -144132205 - AluSg SINE Alu 0 333 1 748 265 53 8 chr4 40156457 40156617 -144132045 + HAL1 LINE L1 1626 1803 -704 538 247 171 65 chr4 40156722 40157042 -144131620 + HAL1 LINE L1 1691 1976 -531 2329 110 0 7 chr4 40157042 40157352 -144131310 + AluSx SINE Alu 1 308 -4 538 247 171 65 chr4 40157352 40157582 -144131080 + HAL1 LINE L1 1976 2299 -208 2094 130 3 7 chr4 40157590 40157898 -144130764 + AluSx SINE Alu 1 307 -5 705 142 16 8 chr4 40158010 40158137 -144130525 + L1MB8 LINE L1 6051 6178 0 3974 111 5 12 chr4 40158214 40158790 -144129872 + L1MA5 LINE L1 5723 6294 -6 707 213 0 0 chr4 40158814 40158936 -144129726 + FLAM_A SINE Alu 6 127 -15 279 216 0 0 chr4 40158978 40159029 -144129633 + L3 LINE CR1 1525 1575 -2 2095 142 0 0 chr4 40159177 40159473 -144129189 + AluSx SINE Alu 3 298 -14 1642 185 29 77 chr4 40159532 40159728 -144128934 - MLT1A1 LTR MaLR 0 365 161 1255 158 224 8 chr4 40159728 40159982 -144128680 + AluSg SINE Alu 1 309 -1 1642 185 29 77 chr4 40159982 40160010 -144128652 - MLT1A1 LTR MaLR -204 161 133 2217 91 31 0 chr4 40160010 40160297 -144128365 - AluSg SINE Alu -14 296 1 1642 185 29 77 chr4 40160297 40160450 -144128212 - MLT1A1 LTR MaLR -232 133 5 1873 150 6 31 chr4 40160602 40160922 -144127740 - AluJb SINE Alu 0 312 1 1018 96 22 0 chr4 40160923 40161059 -144127603 - AluJb SINE Alu -171 141 3 1277 171 3 108 chr4 40161133 40161305 -144127357 - AluSp SINE Alu -28 285 97 3002 140 17 42 chr4 40161305 40161336 -144127326 - L1MB3 LINE L1 -2 6181 6151 2198 99 17 14 chr4 40161336 40161465 -144127197 + AluSg SINE Alu 1 128 -182 2674 42 0 0 chr4 40161465 40161776 -144126886 + AluY SINE Alu 1 311 0 2198 99 17 14 chr4 40161776 40161940 -144126722 + AluSg SINE Alu 128 295 -15 3002 140 17 42 chr4 40161940 40162435 -144126227 - L1MB3 LINE L1 -32 6151 5668 1760 137 54 7 chr4 40162435 40162734 -144125928 - AluSg SINE Alu 0 310 5 1277 171 3 108 chr4 40162734 40162847 -144125815 - AluSp SINE Alu -214 99 29 1186 194 16 25 chr4 40162861 40163103 -144125559 - L1MB3 LINE L1 -510 5673 5434 2365 107 3 0 chr4 40163294 40163602 -144125060 - AluSg SINE Alu -1 309 1 1212 187 9 23 chr4 40163640 40163859 -144124803 - AluJb SINE Alu -12 300 85 356 217 12 12 chr4 40163862 40163945 -144124717 - L1MB3 LINE L1 -1768 4378 4296 570 167 73 0 chr4 40163945 40164041 -144124621 + U6 snRNA snRNA 1 103 -4 231 174 43 0 chr4 40164048 40164094 -144124568 + Alu SINE Alu 85 132 -1 244 254 0 0 chr4 40164151 40164206 -144124456 + A-rich Low_complexity Low_complexity 1 55 0 2093 123 10 23 chr4 40164216 40164526 -144124136 + AluSx SINE Alu 1 306 -6 2232 101 0 0 chr4 40164526 40164813 -144123849 + AluY SINE Alu 1 287 -24 321 243 156 10 chr4 40164813 40164947 -144123715 + MLT1C LTR MaLR 212 388 -117 1025 241 15 23 chr4 40165138 40165403 -144123259 - L1MB3 LINE L1 -1839 4307 4045 963 217 6 0 chr4 40165411 40165577 -144123085 - FAM SINE Alu -7 168 2 2192 118 3 10 chr4 40165639 40165944 -144122718 - AluSx SINE Alu -9 303 1 679 301 91 72 chr4 40166094 40166374 -144122288 - L1ME4a LINE L1 -260 5861 5588 1659 124 167 8 chr4 40166374 40166632 -144122030 + AluSg SINE Alu 1 299 -1 956 220 0 12 chr4 40166634 40166802 -144121860 + AluJo/FRAM SINE Alu 137 302 0 282 116 0 0 chr4 40166810 40166853 -144121809 + (TA)n Simple_repeat Simple_repeat 1 43 0 679 301 91 72 chr4 40166853 40166960 -144121702 - L1ME4a LINE L1 -539 5582 5479 2399 77 3 3 chr4 40166960 40167260 -144121402 + AluSx SINE Alu 1 300 -12 679 301 91 72 chr4 40167260 40167440 -144121222 - L1ME4a LINE L1 -642 5479 5270 48 53 0 0 chr4 40167510 40167586 -144121076 + AT_rich Low_complexity Low_complexity 1 76 0 283 186 47 23 chr4 40167644 40167730 -144120932 - L1MB2 LINE L1 0 6171 6084 880 174 0 0 chr4 40167947 40168079 -144120583 - FLAM_C SINE Alu -1 132 1 287 284 95 21 chr4 40168093 40168188 -144120474 - L2 LINE L2 -2 3270 3169 261 57 0 0 chr4 40168200 40168235 -144120427 + (GA)n Simple_repeat Simple_repeat 2 36 0 1977 87 33 4 chr4 40168391 40168667 -144119995 + L1PA13 LINE L1 5880 6163 0 2556 47 0 0 chr4 40168682 40168982 -144119680 + AluY SINE Alu 1 300 -11 288 176 0 0 chr4 40169205 40169256 -144119406 - MIR SINE MIR -25 237 187 427 183 349 0 chr4 40169291 40169417 -144119245 - MIR SINE MIR -62 200 31 2435 93 3 0 chr4 40169438 40169750 -144118912 - AluSq SINE Alu 0 313 1 732 180 0 39 chr4 40169759 40169887 -144118775 - FLAM_A SINE Alu -10 123 1 1201 185 0 10 chr4 40169951 40170180 -144118482 - AluJo SINE Alu 0 312 86 2175 130 10 0 chr4 40170390 40170698 -144117964 - AluSx SINE Alu -1 311 1 1672 168 11 7 chr4 40170735 40171021 -144117641 + AluJo SINE Alu 1 287 -25 33 80 0 0 chr4 40171021 40171096 -144117566 + AT_rich Low_complexity Low_complexity 1 75 0 201 122 0 49 chr4 40172982 40173023 -144115639 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 652 290 6 0 chr4 40173261 40173437 -144115225 - MIR SINE MIR 0 262 86 1300 132 6 0 chr4 40174085 40174267 -144114395 - AluSg/x SINE Alu -10 300 118 2213 109 13 0 chr4 40174409 40174712 -144113950 + AluSg SINE Alu 1 307 -3 21 0 0 0 chr4 40175127 40175148 -144113514 + AT_rich Low_complexity Low_complexity 1 21 0 1513 71 33 19 chr4 40175808 40176045 -144112617 - AluSp SINE Alu 0 308 69 861 64 0 0 chr4 40176070 40176229 -144112433 - AluSg/x SINE Alu 0 333 175 1209 101 0 0 chr4 40176288 40176447 -144112215 - AluSg/x SINE Alu -17 295 137 476 126 320 39 chr4 40176500 40176603 -144112059 + FLAM_C SINE Alu 1 132 -1 524 134 12 0 chr4 40176614 40176696 -144111966 + L1PB3 LINE L1 5868 5950 -204 302 87 12 22 chr4 40176704 40176759 -144111903 - L1PB3 LINE L1 -192 5959 5905 1252 136 10 20 chr4 40176788 40176987 -144111675 + L1PB3 LINE L1 5956 6152 -2 182 229 125 0 chr4 40177056 40177104 -144111558 - MIR SINE MIR -76 186 133 394 306 106 68 chr4 40177374 40177609 -144111053 + L2 LINE L2 3026 3269 -3 532 207 26 9 chr4 40177721 40177837 -144110825 - MLT1K LTR MaLR 0 588 471 1644 172 3 50 chr4 40178191 40178531 -144110131 + AluJb SINE Alu 1 326 0 1186 145 18 61 chr4 40178657 40178885 -144109777 - MER20 DNA MER1_type -1 218 1 2434 97 0 0 chr4 40179352 40179660 -144109002 + AluSg SINE Alu 1 308 -2 1435 116 5 0 chr4 40179776 40179975 -144108687 - AluSx SINE Alu -112 200 1 949 218 0 0 chr4 40180110 40180275 -144108387 + FRAM SINE Alu 1 165 -1 26 50 0 0 chr4 40180399 40180439 -144108223 + AT_rich Low_complexity Low_complexity 1 40 0 279 0 0 0 chr4 40180871 40180902 -144107760 + (CA)n Simple_repeat Simple_repeat 2 32 0 236 242 74 21 chr4 40181000 40181095 -144107567 + L1MC5 LINE L1 7832 7931 -30 1658 189 13 17 chr4 40181261 40181562 -144107100 + AluJo SINE Alu 1 300 -12 1826 122 76 0 chr4 40182067 40182357 -144106305 - AluSp SINE Alu 0 310 1 477 303 72 10 chr4 40182486 40182683 -144105979 - MIR SINE MIR -10 252 45 2074 109 20 10 chr4 40183006 40183300 -144105362 - AluSx SINE Alu -15 297 1 2084 143 13 0 chr4 40183428 40183735 -144104927 + AluSx SINE Alu 1 311 -1 2259 99 10 10 chr4 40184254 40184557 -144104105 + AluSx SINE Alu 1 303 -9 1296 118 0 0 chr4 40184557 40184726 -144103936 + AluSq SINE Alu 134 302 -11 1889 151 35 3 chr4 40185293 40185578 -144103084 - AluJb SINE Alu -18 294 1 256 240 50 84 chr4 40185582 40185761 -144102901 - L1ME4a LINE L1 -3 6118 5946 1976 144 7 17 chr4 40186230 40186529 -144102133 + AluSx SINE Alu 1 296 -16 1989 121 7 4 chr4 40186529 40186808 -144101854 - AluSx SINE Alu -31 281 1 341 277 66 108 chr4 40186981 40187147 -144101515 + MIR3 SINE MIR 30 188 -20 633 296 17 0 chr4 40187191 40187363 -144101299 + MIR SINE MIR 88 262 0 2276 100 0 17 chr4 40187528 40187829 -144100833 - AluSx SINE Alu -16 296 1 187 115 0 0 chr4 40188306 40188332 -144100330 + MIR SINE MIR 49 74 -188 281 252 126 39 chr4 40188442 40188569 -144100093 - L2 LINE L2 -3 3269 3132 28 0 0 0 chr4 40188605 40188633 -144100029 + AT_rich Low_complexity Low_complexity 1 28 0 661 139 191 0 chr4 40188667 40188782 -144099880 + AluJo SINE Alu 2 138 -174 2176 128 3 3 chr4 40188827 40189132 -144099530 - AluJb SINE Alu -6 306 2 372 247 0 0 chr4 40189239 40189324 -144099338 - MER69 DNA AcHobo -2441 85 1 21 0 0 0 chr4 40189352 40189373 -144099289 + AT_rich Low_complexity Low_complexity 1 21 0 2229 109 10 0 chr4 40189389 40189691 -144098971 - AluSx SINE Alu -7 305 1 1897 148 0 40 chr4 40190201 40190504 -144098158 - AluJb SINE Alu -21 291 1 2204 110 3 16 chr4 40190598 40190734 -144097928 + AluSx SINE Alu 1 137 -175 2262 88 3 0 chr4 40190734 40191028 -144097634 + AluY SINE Alu 1 295 -16 2204 110 3 16 chr4 40191028 40191201 -144097461 + AluSx SINE Alu 137 306 -6 1777 153 7 17 chr4 40191453 40191747 -144096915 - AluJo SINE Alu -17 295 5 523 191 0 0 chr4 40191857 40191946 -144096716 + FLAM SINE Alu 43 131 -12 2329 103 0 0 chr4 40191963 40192264 -144096398 + AluSx SINE Alu 1 301 -11 353 340 16 24 chr4 40192547 40192736 -144095926 - MIR SINE MIR -55 207 20 2357 106 0 3 chr4 40192909 40193221 -144095441 + AluSq SINE Alu 3 313 0 27 49 0 0 chr4 40193441 40193482 -144095180 + AT_rich Low_complexity Low_complexity 1 41 0 2199 93 0 7 chr4 40193482 40193771 -144094891 - AluSq SINE Alu -26 287 1 2201 112 0 29 chr4 40195356 40195670 -144092992 - AluSx SINE Alu -5 307 3 1826 153 3 42 chr4 40195678 40195991 -144092671 - AluJb SINE Alu -11 301 1 2351 67 3 27 chr4 40196014 40196313 -144092349 - AluSp SINE Alu -21 292 1 2177 119 3 0 chr4 40196767 40197062 -144091600 + AluSx SINE Alu 1 296 -16 23 0 0 0 chr4 40197280 40197303 -144091359 + AT_rich Low_complexity Low_complexity 1 23 0 659 275 66 41 chr4 40197540 40197644 -144091018 - MIR SINE MIR 0 262 162 2240 105 0 3 chr4 40197644 40197940 -144090722 - AluSq SINE Alu -16 297 3 659 275 66 41 chr4 40197940 40198095 -144090567 - MIR SINE MIR -100 162 4 540 226 16 8 chr4 40198131 40198255 -144090407 - MIR SINE MIR 0 262 138 2378 109 0 0 chr4 40198340 40198651 -144090011 + AluSx SINE Alu 1 311 -1 2359 92 0 0 chr4 40199575 40199869 -144088793 - AluSx SINE Alu -18 294 1 2045 125 10 3 chr4 40199891 40200180 -144088482 - AluSx SINE Alu -21 291 1 2351 109 0 0 chr4 40200185 40200488 -144088174 - AluSq SINE Alu -10 303 1 2373 102 0 9 chr4 40201457 40201772 -144086890 - AluSq SINE Alu -1 312 1 359 261 23 0 chr4 40201817 40201905 -144086757 - MIR3 SINE MIR -8 200 111 216 272 152 11 chr4 40202927 40203019 -144085643 - L2 LINE L2 -22 3250 3146 608 256 103 51 chr4 40203206 40203518 -144085144 + L2 LINE L2 2984 3311 -2 21 0 0 0 chr4 40203534 40203555 -144085107 + AT_rich Low_complexity Low_complexity 1 21 0 304 270 0 14 chr4 40203586 40203660 -144085002 - MIR3 SINE MIR -21 187 115 1653 193 17 3 chr4 40203766 40204061 -144084601 - AluJo SINE Alu -13 299 1 277 276 0 0 chr4 40204075 40204133 -144084529 - MIR SINE MIR -115 147 90 2109 95 0 89 chr4 40204217 40204421 -144084241 - AluSx SINE Alu -1 311 147 2161 120 0 23 chr4 40204421 40204730 -144083932 - AluSq SINE Alu -11 302 1 2109 95 0 89 chr4 40204730 40204863 -144083799 - AluSx SINE Alu -165 147 4 2186 129 3 3 chr4 40204896 40205206 -144083456 - AluSx SINE Alu 0 312 3 1646 121 106 4 chr4 40205355 40205620 -144083042 - AluSq SINE Alu -21 292 1 1967 155 7 0 chr4 40205627 40205918 -144082744 - AluSx SINE Alu -19 293 1 383 337 12 66 chr4 40207600 40207723 -144080939 - MLT1K LTR MaLR -378 210 82 671 125 21 0 chr4 40207723 40207819 -144080843 + HY3 scRNA scRNA 1 98 -3 405 0 0 0 chr4 40207824 40207869 -144080793 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 383 337 12 66 chr4 40207869 40207905 -144080757 - MLT1K LTR MaLR -510 78 54 1834 128 40 40 chr4 40208018 40208314 -144080348 + AluJb SINE Alu 1 296 -16 2089 209 184 87 chr4 40208385 40208494 -144080168 - L1MC4 LINE L1 -1 8041 7944 2294 98 0 3 chr4 40208494 40208791 -144079871 - AluSg SINE Alu -14 296 1 2089 209 184 87 chr4 40208791 40209299 -144079363 - L1MC4 LINE L1 -98 7944 7487 568 210 0 57 chr4 40209299 40209423 -144079239 + FLAM_C SINE Alu 1 117 -16 2089 209 184 87 chr4 40209423 40209521 -144079141 - L1MC4 LINE L1 -555 7487 7400 1916 132 6 49 chr4 40209521 40209846 -144078816 + AluSx SINE Alu 1 311 -1 2089 209 184 87 chr4 40209846 40209935 -144078727 - L1MC4 LINE L1 -642 7400 7321 2260 79 7 0 chr4 40209935 40210243 -144078419 + AluSq SINE Alu 1 310 0 2089 209 184 87 chr4 40210243 40210598 -144078064 - L1MC4 LINE L1 -721 7321 6765 209 337 12 0 chr4 40211252 40211335 -144077327 - MIR SINE MIR -71 191 108 2267 86 0 55 chr4 40211553 40211880 -144076782 - AluSp SINE Alu -4 309 1 420 109 94 0 chr4 40212279 40212343 -144076319 + AluJ/FLAM SINE Alu 2 71 -241 579 108 36 0 chr4 40213958 40214041 -144074621 - L1MA1 LINE L1 -9 6293 6208 205 330 43 32 chr4 40214041 40214128 -144074534 - L2 LINE L2 -1999 1315 1225 1995 121 26 10 chr4 40215203 40215509 -144073153 + AluSq SINE Alu 1 311 -2 2273 110 3 0 chr4 40215804 40216114 -144072548 + AluSx SINE Alu 1 311 -1 1595 170 52 0 chr4 40217848 40218118 -144070544 + AluJb SINE Alu 4 287 -25 502 289 168 36 chr4 40218528 40218892 -144069770 - L2 LINE L2 -35 3278 2867 248 288 280 0 chr4 40218967 40219085 -144069577 - L2 LINE L2 -561 2753 2603 1055 202 61 34 chr4 40219352 40219614 -144069048 + AluJo SINE Alu 11 279 -33 344 181 133 29 chr4 40219864 40219969 -144068693 - L2 LINE L2 -2447 867 752 1611 105 5 5 chr4 40221478 40221697 -144066965 + AluSc SINE Alu 1 219 -90 658 200 0 0 chr4 40221855 40221960 -144066702 + AluJo SINE Alu 38 142 -170 1115 177 19 0 chr4 40221980 40222189 -144066473 + AluJb SINE Alu 79 291 -21 735 174 45 39 chr4 40222384 40222539 -144066123 + L1MA7 LINE L1 6132 6287 -4 189 281 156 31 chr4 40223221 40223317 -144065345 - L2 LINE L2 -7 3265 3158 684 133 117 33 chr4 40223658 40223778 -144064884 + FLAM_C SINE Alu 2 131 -2 301 224 37 65 chr4 40225641 40225748 -144062914 - MIR SINE MIR 0 262 159 1764 66 4 4 chr4 40226172 40226398 -144062264 + AluSc SINE Alu 84 309 0 2604 40 0 10 chr4 40226658 40226961 -144061701 + AluY SINE Alu 1 300 -11 2274 106 7 0 chr4 40228099 40228401 -144060261 - AluSg SINE Alu -6 304 1 34 24 0 0 chr4 40228751 40228792 -144059870 + AT_rich Low_complexity Low_complexity 1 41 0 1992 119 14 10 chr4 40229111 40229404 -144059258 + AluSx SINE Alu 1 294 -18 619 220 113 12 chr4 40229507 40229675 -144058987 - AluJb SINE Alu -14 298 114 305 180 20 0 chr4 40229778 40229828 -144058834 - Alu SINE Alu -252 51 1 1825 168 3 20 chr4 40230497 40230801 -144057861 + AluJb SINE Alu 1 299 -13 1453 174 71 18 chr4 40230945 40231227 -144057435 - AluJo SINE Alu -15 297 1 351 250 22 1 chr4 40231357 40231469 -144057193 - L1ME3 LINE L1 -211 5951 5837 1977 114 28 0 chr4 40232117 40232406 -144056256 - AluSx SINE Alu -15 297 1 1727 144 7 31 chr4 40232408 40232699 -144055963 - AluJo SINE Alu -3 309 26 330 250 36 36 chr4 40232766 40232878 -144055784 + MER112 DNA MER1_type 138 249 -11 1472 165 55 52 chr4 40232887 40233178 -144055484 + AluJo SINE Alu 3 294 -18 32 81 0 0 chr4 40234343 40234417 -144054245 + AT_rich Low_complexity Low_complexity 1 74 0 2224 105 7 10 chr4 40234647 40234952 -144053710 + AluSp SINE Alu 1 304 -9 341 95 16 0 chr4 40234952 40235015 -144053647 + (TA)n Simple_repeat Simple_repeat 2 65 0 2019 112 35 11 chr4 40235057 40235344 -144053318 + AluSx SINE Alu 12 305 -7 270 151 0 0 chr4 40236740 40236793 -144051869 + L1PA15 LINE L1 6112 6164 -1 204 304 36 0 chr4 40237477 40237533 -144051129 + L2 LINE L2 3182 3239 -33 2024 131 0 64 chr4 40237776 40237967 -144050695 - AluSq SINE Alu -6 307 144 2264 103 10 13 chr4 40237967 40238277 -144050385 - AluSx SINE Alu -3 309 1 2024 131 0 64 chr4 40238277 40238413 -144050249 - AluSq SINE Alu -169 144 1 2002 113 33 95 chr4 40238413 40238560 -144050102 - Tigger2a DNA MER2_type -2334 374 219 318 106 0 0 chr4 40238560 40238607 -144050055 + (CA)n Simple_repeat Simple_repeat 2 48 0 2002 113 33 95 chr4 40238607 40238858 -144049804 - Tigger2a DNA MER2_type -2489 219 1 334 290 100 0 chr4 40239104 40239204 -144049458 - L2 LINE L2 0 3272 3163 2426 72 7 3 chr4 40240432 40240738 -144047924 + AluY SINE Alu 1 307 -4 907 151 36 18 chr4 40240741 40240907 -144047755 + AluJo/FRAM SINE Alu 137 305 -7 706 216 0 0 chr4 40240914 40241030 -144047632 + FLAM_A SINE Alu 1 116 -26 592 173 10 0 chr4 40241035 40241139 -144047523 - AluSg/x SINE Alu -2 308 204 382 316 96 3 chr4 40241297 40241489 -144047173 - MIR SINE MIR -10 252 45 2074 109 20 10 chr4 40241812 40242106 -144046556 - AluSx SINE Alu -15 297 1 2084 143 13 0 chr4 40242234 40242541 -144046121 + AluSx SINE Alu 1 311 -1 1825 109 18 21 chr4 40243060 40243376 -144045286 + AluSx SINE Alu 1 315 0 2089 112 3 45 chr4 40243544 40243858 -144044804 + AluJb SINE Alu 1 301 -11 2359 105 0 0 chr4 40245209 40245515 -144043147 + AluSq SINE Alu 1 306 -7 1649 159 39 25 chr4 40245668 40245951 -144042711 + AluJb SINE Alu 6 292 -20 1988 145 7 0 chr4 40246184 40246473 -144042189 + AluSx SINE Alu 1 291 -21 1772 164 18 7 chr4 40246893 40247179 -144041483 + AluSx SINE Alu 2 290 -22 2142 117 17 3 chr4 40247198 40247496 -144041166 + AluSx SINE Alu 1 302 -10 1896 124 44 0 chr4 40247555 40247830 -144040832 - AluSx SINE Alu -17 295 9 1807 136 31 7 chr4 40248029 40248316 -144040346 + AluSx SINE Alu 1 294 -18 30 0 0 0 chr4 40249728 40249758 -144038904 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr4 40250021 40250057 -144038605 + AT_rich Low_complexity Low_complexity 1 36 0 1774 149 29 0 chr4 40250141 40250445 -144038217 - AluSx SINE Alu 0 312 1 1057 98 0 0 chr4 40250448 40250581 -144038081 - AluSq/x SINE Alu -179 133 1 835 235 109 20 chr4 40250601 40250848 -144037814 + MLT1J LTR MaLR 203 471 -40 2201 115 0 3 chr4 40251244 40251540 -144037122 - AluY SINE Alu -16 295 1 1769 165 7 29 chr4 40251540 40251849 -144036813 - AluJb SINE Alu -10 302 1 378 179 60 0 chr4 40251880 40251947 -144036715 + AluJ/FRAM SINE Alu 228 298 -4 2058 130 10 7 chr4 40251949 40252235 -144036427 + AluSq SINE Alu 1 290 -23 315 0 0 0 chr4 40252235 40252270 -144036392 + (CA)n Simple_repeat Simple_repeat 2 36 0 2058 130 10 7 chr4 40252270 40252284 -144036378 + AluSq SINE Alu 290 302 -11 1579 150 24 12 chr4 40252353 40252606 -144036056 - AluJb SINE Alu -22 290 35 1323 218 127 19 chr4 40252628 40253107 -144035555 + LTR61 LTR ERV1 16 595 0 2145 153 30 14 chr4 40253107 40253474 -144035188 + HERV3 LTR ERV1 2 374 -8052 587 176 0 0 chr4 40253493 40253584 -144035078 + HERV3 LTR ERV1 894 984 -7442 * 10662 167 2 2 chr4 40253572 40255197 -144033465 + HERV3 LTR ERV1 1332 2957 -5469 * 11972 154 6 16 chr4 40255187 40255471 -144033191 + HERV3 LTR ERV1 4258 4543 -3883 2447 58 3 0 chr4 40255471 40255764 -144032898 + AluY SINE Alu 1 294 -17 11972 154 6 16 chr4 40255764 40257399 -144031263 + HERV3 LTR ERV1 4543 6221 -2205 2440 71 0 0 chr4 40257399 40257694 -144030968 + AluY SINE Alu 1 295 -16 1010 251 5 0 chr4 40257697 40257896 -144030766 + HERV3 LTR ERV1 6381 6580 -1846 * 1534 222 46 10 chr4 40257895 40258201 -144030461 + HERV3 LTR ERV1 8110 8426 0 334 302 0 54 chr4 40258225 40258354 -144030308 + LTR4 LTR ERV1 16 137 -459 485 120 0 6 chr4 40258389 40258470 -144030192 - L1MB4 LINE L1 -36 6138 6066 2301 90 10 0 chr4 40258951 40259240 -144029422 - AluSq SINE Alu -21 292 1 1913 128 7 20 chr4 40259493 40259656 -144029006 - AluSx SINE Alu -16 296 137 2095 113 20 0 chr4 40259656 40259949 -144028713 - AluSq SINE Alu -14 299 1 1913 128 7 20 chr4 40259949 40260083 -144028579 - AluSx SINE Alu -175 137 3 1211 124 11 0 chr4 40260156 40260333 -144028329 - AluSg/x SINE Alu 0 310 132 2238 121 0 0 chr4 40260333 40260638 -144028024 - AluSq SINE Alu -8 305 1 879 261 128 47 chr4 40260724 40261230 -144027432 - MLT1L LTR MaLR -61 554 8 614 276 25 5 chr4 40261233 40261432 -144027230 - MIR SINE MIR -8 254 52 460 179 0 12 chr4 40261449 40261533 -144027129 + L1MC4 LINE L1 7176 7258 -784 2174 92 3 7 chr4 40261536 40261852 -144026810 - AluSx SINE Alu 0 315 1 1422 181 127 0 chr4 40261854 40262113 -144026549 - AluJb SINE Alu -20 292 1 2269 220 46 15 chr4 40262146 40262600 -144026062 + MLT1F LTR MaLR 6 473 -69 295 90 45 252 chr4 40262602 40262648 -144026014 + L1MC4 LINE L1 7836 7890 -152 2076 119 61 3 chr4 40262648 40262941 -144025721 - AluSx SINE Alu -2 310 1 295 90 45 252 chr4 40262941 40263049 -144025613 + L1MC4 LINE L1 7890 7958 -84 255 128 0 21 chr4 40263151 40263198 -144025464 + L1MC4 LINE L1 7992 8037 -5 301 262 87 56 chr4 40263219 40263345 -144025317 + Charlie8 DNA MER1_type 11 140 -2277 1237 108 30 0 chr4 40263346 40263512 -144025150 + AluSq SINE Alu 126 296 -17 277 222 32 0 chr4 40263750 40263813 -144024849 + MIR SINE MIR 56 120 -142 289 304 74 40 chr4 40264062 40264210 -144024452 - MIR SINE MIR -20 242 90 2492 80 3 0 chr4 40264316 40264618 -144024044 - AluSp SINE Alu -10 303 1 32 0 0 0 chr4 40264729 40264761 -144023901 + AT_rich Low_complexity Low_complexity 1 32 0 2000 141 7 3 chr4 40264977 40265275 -144023387 - AluJb SINE Alu -13 299 1 2079 70 48 7 chr4 40265357 40265657 -144023005 - AluSq SINE Alu 0 312 2 687 146 23 8 chr4 40265826 40265956 -144022706 + AluSg/x SINE Alu 177 308 -1 581 160 30 0 chr4 40266291 40266391 -144022271 - MER58 DNA MER1_type 0 2420 2318 643 129 29 107 chr4 40266409 40266549 -144022113 - FLAM_C SINE Alu -12 131 3 2233 134 0 6 chr4 40266876 40267190 -144021472 - AluSx SINE Alu 0 312 1 6327 105 14 2 chr4 40267214 40268078 -144020584 - THE1B-int LTR MaLR -706 874 1 2308 122 44 20 chr4 40268078 40268421 -144020241 - THE1B LTR MaLR 0 364 14 736 183 28 0 chr4 40268462 40268604 -144020058 - AluJb SINE Alu -3 309 164 770 96 128 4 chr4 40268604 40268744 -144019918 + THE1B LTR MaLR 4 182 -182 1037 124 19 12 chr4 40268746 40268907 -144019755 + AluSq SINE Alu 137 298 -15 1026 120 47 58 chr4 40268907 40269098 -144019564 + THE1B LTR MaLR 176 364 0 11138 75 1 119 chr4 40269098 40269468 -144019194 + THE1B-int LTR MaLR 1 413 -1167 839 164 127 11 chr4 40269468 40269657 -144019005 - AluSq SINE Alu -13 300 90 11138 75 1 119 chr4 40269657 40269724 -144018938 + THE1B-int LTR MaLR 413 486 -1094 2210 117 3 0 chr4 40269724 40270024 -144018638 + AluSg SINE Alu 1 301 -9 11138 75 1 119 chr4 40270024 40271189 -144017473 + THE1B-int LTR MaLR 486 1580 0 1743 118 103 63 chr4 40271190 40271283 -144017379 + THE1B LTR MaLR 2 90 -274 2226 106 13 0 chr4 40271283 40271585 -144017077 + AluSq SINE Alu 1 306 -7 1743 118 103 63 chr4 40271585 40271770 -144016892 + THE1B LTR MaLR 90 299 -65 2462 73 0 13 chr4 40271770 40272084 -144016578 - AluY SINE Alu 0 311 2 1743 118 103 63 chr4 40272084 40272153 -144016509 + THE1B LTR MaLR 299 364 0 570 248 116 10 chr4 40272153 40272351 -144016311 + Charlie2 DNA MER1_type 253 471 -2311 330 234 117 29 chr4 40272826 40272963 -144015699 + MLT1J LTR MaLR 312 460 -51 866 299 148 28 chr4 40273007 40273626 -144015036 + L2 LINE L2 2357 3050 -263 733 233 25 117 chr4 40273630 40273956 -144014706 + AluJo SINE Alu 3 298 -4 2174 91 4 0 chr4 40273968 40274242 -144014420 - AluSg SINE Alu -25 285 11 1796 172 3 7 chr4 40274342 40274639 -144014023 - AluJb SINE Alu -16 296 1 1940 130 11 28 chr4 40274642 40274956 -144013706 - AluSx SINE Alu 0 313 5 21 0 0 0 chr4 40274963 40274984 -144013678 + AT_rich Low_complexity Low_complexity 1 21 0 869 142 0 0 chr4 40275201 40275328 -144013334 - FLAM_C SINE Alu -6 127 1 2826 129 0 14 chr4 40275768 40276203 -144012459 - LTR3 LTR ERVK 0 429 1 9167 229 10 3 chr4 40276206 40278050 -144010612 - HERVK3 LTR ERVK -2 7241 5384 7890 146 5 2 chr4 40278051 40279287 -144009375 - HERVK3 LTR ERVK -2054 5189 3950 6366 138 21 4 chr4 40279285 40280284 -144008378 - HERVK3 LTR ERVK -5757 1486 471 * 721 111 238 47 chr4 40280272 40280444 -144008218 - HERVK3 LTR ERVK -6971 272 68 * 2737 133 12 12 chr4 40280461 40280890 -144007772 - LTR3 LTR ERVK 0 429 1 1725 145 41 0 chr4 40280891 40281160 -144007502 + AluJb SINE Alu 14 293 -19 1252 175 16 29 chr4 40281733 40281979 -144006683 - AluJo SINE Alu -21 291 49 2434 78 3 7 chr4 40281999 40282308 -144006354 + AluSc SINE Alu 1 308 -1 2371 97 0 3 chr4 40282351 40282660 -144006002 + AluSg SINE Alu 1 308 -2 2351 100 3 0 chr4 40284427 40284726 -144003936 - AluSp SINE Alu -13 300 1 231 36 0 0 chr4 40284778 40284806 -144003856 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 911 131 15 0 chr4 40284883 40285013 -144003649 - FLAM_C SINE Alu -11 132 1 2131 126 7 0 chr4 40285434 40285735 -144002927 + AluSq SINE Alu 1 303 -10 1944 125 39 0 chr4 40285814 40286095 -144002567 - AluSx SINE Alu -20 292 1 2249 116 3 0 chr4 40286800 40287103 -144001559 - AluSx SINE Alu -8 304 1 22 0 0 0 chr4 40287315 40287337 -144001325 + AT_rich Low_complexity Low_complexity 1 22 0 2270 106 7 7 chr4 40287428 40287731 -144000931 - AluSx SINE Alu -9 303 1 40 59 0 0 chr4 40288694 40288762 -143999900 + AT_rich Low_complexity Low_complexity 1 68 0 256 255 128 28 chr4 40289202 40289343 -143999319 + MLT1K LTR MaLR 418 572 -16 2332 99 3 7 chr4 40289579 40289881 -143998781 - AluSx SINE Alu -11 301 1 2373 97 0 0 chr4 40290114 40290412 -143998250 - AluSq SINE Alu -15 298 1 885 128 15 0 chr4 40290709 40290842 -143997820 + AluSq/x SINE Alu 1 135 -178 2111 142 0 0 chr4 40290842 40291144 -143997518 + AluSx SINE Alu 1 302 -10 201 74 0 0 chr4 40291165 40291192 -143997470 + (T)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr4 40291212 40291233 -143997429 + AT_rich Low_complexity Low_complexity 1 21 0 517 148 28 9 chr4 40291235 40291343 -143997319 - L1MA8 LINE L1 -2 6289 6180 2490 88 0 0 chr4 40291347 40291652 -143997010 - AluSq SINE Alu -8 305 1 2040 132 3 3 chr4 40291753 40292049 -143996613 - AluSx SINE Alu -16 296 1 1142 149 55 10 chr4 40292492 40292693 -143995969 + AluJo SINE Alu 87 296 -16 1117 167 40 44 chr4 40293362 40293589 -143995073 - AluJo SINE Alu -10 302 77 2272 105 10 0 chr4 40293591 40293887 -143994775 - AluSx SINE Alu -13 299 1 323 164 27 55 chr4 40293887 40293960 -143994702 - AluJo SINE Alu -155 147 77 233 276 0 0 chr4 40294669 40294727 -143993935 + L2 LINE L2 3251 3308 -5 494 151 0 0 chr4 40294782 40294855 -143993807 + AluJ/FLAM SINE Alu 2 74 -238 2385 90 7 0 chr4 40295974 40296273 -143992389 + AluY SINE Alu 1 301 -10 2266 109 10 0 chr4 40296874 40297176 -143991486 - AluSx SINE Alu -4 308 4 2252 95 0 10 chr4 40297195 40297491 -143991171 - AluSg SINE Alu -17 293 1 2531 51 3 0 chr4 40297502 40297798 -143990864 - AluY SINE Alu -14 297 1 331 287 208 5 chr4 40297798 40298000 -143990662 + MIR SINE MIR 8 250 -12 1815 168 3 13 chr4 40298977 40299139 -143989523 - AluSx SINE Alu -17 295 136 2360 103 0 0 chr4 40299139 40299439 -143989223 - AluSg SINE Alu -9 301 2 1815 168 3 13 chr4 40299439 40299574 -143989088 - AluSx SINE Alu -176 136 1 357 156 47 0 chr4 40299993 40300057 -143988605 + MLT2C1 LTR ERVL 1 67 -330 2538 75 0 0 chr4 40300252 40300560 -143988102 + AluY SINE Alu 1 308 -3 1047 193 176 35 chr4 40300790 40301120 -143987542 - Tigger7 DNA MER2_type 0 2491 2 28 29 0 0 chr4 40301715 40301750 -143986912 + AT_rich Low_complexity Low_complexity 1 35 0 1906 137 13 10 chr4 40302175 40302474 -143986188 + AluJb SINE Alu 1 300 -12 721 184 16 0 chr4 40303104 40303229 -143985433 + FLAM_A SINE Alu 1 127 -6 447 246 164 0 chr4 40303349 40303483 -143985179 + MIR SINE MIR 93 248 -14 841 125 0 0 chr4 40303622 40303734 -143984928 - AluSx SINE Alu -23 287 176 523 191 0 11 chr4 40303734 40303828 -143984834 - AluSx SINE Alu -218 94 2 1463 181 56 36 chr4 40303892 40304195 -143984467 + AluJo SINE Alu 1 309 -3 1819 164 0 14 chr4 40304473 40304759 -143983903 - AluJo SINE Alu -30 282 1 1783 161 0 33 chr4 40305205 40305510 -143983152 - AluJb SINE Alu -17 295 1 1196 193 14 0 chr4 40305511 40305729 -143982933 - MER58A DNA MER1_type -3 221 1 406 252 145 13 chr4 40305785 40305944 -143982718 + MIR SINE MIR 70 249 -13 21 36 0 0 chr4 40307219 40307247 -143981415 + AT_rich Low_complexity Low_complexity 1 28 0 2244 108 3 7 chr4 40307489 40307786 -143980876 - AluSx SINE Alu -16 296 1 2288 92 24 0 chr4 40307934 40308226 -143980436 - AluSx SINE Alu -13 299 1 188 234 78 0 chr4 40308304 40308368 -143980294 + MIR SINE MIR 84 152 -110 1816 163 52 0 chr4 40309043 40309331 -143979331 - AluJb SINE Alu -9 303 1 2493 85 0 0 chr4 40309752 40310058 -143978604 - AluSc SINE Alu -3 306 1 1684 155 14 41 chr4 40310604 40310894 -143977768 - AluJb SINE Alu -30 282 1 219 36 0 0 chr4 40310896 40310924 -143977738 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 2058 132 4 0 chr4 40310924 40311205 -143977457 - AluSx SINE Alu -30 282 1 729 221 19 0 chr4 40311207 40311361 -143977301 - AluJb SINE Alu -19 293 137 27 62 0 0 chr4 40311644 40311692 -143976970 + AT_rich Low_complexity Low_complexity 1 48 0 472 217 89 38 chr4 40311769 40311926 -143976736 + L1MC5 LINE L1 7258 7422 -539 2082 127 7 0 chr4 40311931 40312223 -143976439 - AluSx SINE Alu -18 294 1 1395 134 0 14 chr4 40312305 40312521 -143976141 + AluJb SINE Alu 84 296 -16 373 251 246 0 chr4 40312521 40312688 -143975974 + L1MC5 LINE L1 7706 7913 -48 2389 72 3 23 chr4 40313427 40313732 -143974930 - AluSx SINE Alu -13 299 1 950 241 60 44 chr4 40313866 40314142 -143974520 - L1ME3A LINE L1 -114 6056 5773 2160 132 0 6 chr4 40314142 40314453 -143974209 - AluSx SINE Alu -3 309 1 950 241 60 44 chr4 40314453 40314495 -143974167 - L1ME3A LINE L1 -397 5773 5733 356 172 94 0 chr4 40314498 40314562 -143974100 - L1ME3A LINE L1 -485 5685 5616 1510 160 119 11 chr4 40314570 40314839 -143973823 - AluJb SINE Alu -14 298 1 186 43 0 0 chr4 40314842 40314865 -143973797 + (A)n Simple_repeat Simple_repeat 1 23 0 727 128 9 0 chr4 40314871 40314980 -143973682 - FLAM_C SINE Alu -32 111 2 488 245 98 7 chr4 40314983 40315126 -143973536 - L1ME3A LINE L1 -563 5607 5452 2131 142 0 0 chr4 40315137 40315439 -143973223 - AluSx SINE Alu -10 302 1 738 185 0 22 chr4 40315442 40315577 -143973085 - FLAM_A SINE Alu -1 132 1 2244 96 0 3 chr4 40315775 40316057 -143972605 - AluSx SINE Alu -26 286 6 1560 180 24 3 chr4 40316279 40316573 -143972089 + AluSq SINE Alu 1 300 -13 42 36 0 0 chr4 40316879 40316935 -143971727 + AT_rich Low_complexity Low_complexity 1 56 0 21 0 0 0 chr4 40316946 40316967 -143971695 + AT_rich Low_complexity Low_complexity 1 21 0 2302 99 13 0 chr4 40317008 40317312 -143971350 + AluSx SINE Alu 1 308 -4 214 257 0 54 chr4 40318573 40318647 -143970015 - MIR3 SINE MIR -35 173 104 2231 97 10 7 chr4 40318981 40319270 -143969392 - AluSc SINE Alu -12 297 8 1794 150 17 17 chr4 40319273 40319567 -143969095 - AluSx SINE Alu -18 294 1 254 237 195 38 chr4 40319727 40319738 -143968924 - L1MC4a LINE L1 -1636 6172 6164 2243 97 7 7 chr4 40319738 40320038 -143968624 + AluSp SINE Alu 1 300 -13 254 237 195 38 chr4 40320038 40320288 -143968374 - L1MC4a LINE L1 -1644 6164 5870 216 253 177 13 chr4 40320529 40320608 -143968054 + L2 LINE L2 3222 3313 0 1870 154 3 23 chr4 40320718 40321023 -143967639 - AluSx SINE Alu -13 299 1 2374 92 7 0 chr4 40321405 40321708 -143966954 - AluSx SINE Alu -7 305 1 2618 55 0 10 chr4 40321711 40322023 -143966639 - AluY SINE Alu -2 309 1 2278 116 0 0 chr4 40374902 40375205 -143913457 + AluSx SINE Alu 1 303 -9 2038 110 3 13 chr4 40375430 40375731 -143912931 + AluY SINE Alu 1 298 -13 1213 142 0 0 chr4 40375971 40376140 -143912522 - AluSx SINE Alu -143 169 1 302 232 0 49 chr4 40376876 40376958 -143911704 + L1MEc LINE L1 49 126 -6270 1405 318 0 75 chr4 40376961 40377294 -143911368 - AluY SINE Alu -3 308 1 1035 192 10 10 chr4 40377302 40377500 -143911162 + AluJo SINE Alu 108 305 -7 250 225 92 50 chr4 40377563 40377683 -143910979 + L1MC4a LINE L1 5899 6023 -1785 421 205 115 33 chr4 40377857 40377979 -143910683 - L2 LINE L2 -8 3305 3174 384 200 42 152 chr4 40377979 40378058 -143910604 + Charlie1a DNA MER1_type 9 62 -2699 2214 116 0 0 chr4 40378058 40378359 -143910303 - AluY SINE Alu -10 301 1 384 200 42 152 chr4 40378359 40378444 -143910218 + Charlie1a DNA MER1_type 62 155 -1300 441 0 0 0 chr4 40378634 40378683 -143909979 + (A)n Simple_repeat Simple_repeat 1 49 0 1856 177 7 0 chr4 40378691 40379001 -143909661 + AluJo SINE Alu 1 312 0 2354 78 0 0 chr4 40379459 40379774 -143908888 - AluSp SINE Alu 0 315 1 311 238 0 0 chr4 40380030 40380093 -143908569 - MLT-int LTR MaLR -993 742 680 1884 184 7 0 chr4 40380374 40380679 -143907983 + AluJo SINE Alu 1 307 -5 1584 136 78 61 chr4 40380695 40380989 -143907673 + AluJo SINE Alu 1 299 -13 518 209 28 11 chr4 40381150 40381327 -143907335 + (TA)n Simple_repeat Simple_repeat 1 180 0 745 152 29 0 chr4 40381362 40381533 -143907129 + (TA)n Simple_repeat Simple_repeat 1 176 0 1025 85 0 0 chr4 40381533 40381663 -143906999 - AluSg/x SINE Alu -20 290 161 1953 150 10 0 chr4 40381834 40382140 -143906522 - AluSq SINE Alu -4 309 1 1798 152 3 40 chr4 40382141 40382444 -143906218 - AluJb SINE Alu -18 294 3 276 220 0 0 chr4 40382646 40382696 -143905966 - L2 LINE L2 -48 3265 3216 1367 136 0 5 chr4 40383248 40383439 -143905223 + AluSx SINE Alu 1 190 -122 2243 92 3 0 chr4 40383539 40383823 -143904839 - AluSg SINE Alu -25 285 1 2099 122 3 13 chr4 40383828 40384132 -143904530 - AluSx SINE Alu -11 301 1 584 171 0 0 chr4 40384163 40384251 -143904411 + FRAM SINE Alu 68 155 -21 594 346 28 15 chr4 40384266 40384590 -143904072 + L1MEc LINE L1 363 690 -6031 1965 122 0 56 chr4 40384688 40385008 -143903654 - AluSx SINE Alu -10 302 1 763 158 0 68 chr4 40385008 40385154 -143903508 - FLAM_C SINE Alu -6 137 2 4967 153 64 73 chr4 40385324 40385615 -143903047 + L1MEc LINE L1 1040 1332 -5208 1923 132 21 7 chr4 40385615 40385933 -143902729 + AluSx SINE Alu 1 312 0 4967 153 64 73 chr4 40385933 40386559 -143902103 + L1MEc LINE L1 1332 2013 -4527 531 43 0 14 chr4 40386559 40386628 -143902034 + AluSp/q SINE Alu 229 296 -17 4967 153 64 73 chr4 40386628 40386881 -143901781 + L1MEc LINE L1 2013 2267 -4273 628 189 78 5 chr4 40386900 40387103 -143901559 + L1MD2 LINE L1 6077 6347 -12 1856 140 8 0 chr4 40387103 40387368 -143901294 + AluSx SINE Alu 24 290 -22 628 189 78 5 chr4 40387368 40387380 -143901282 + L1MD2 LINE L1 6347 6357 -2 1673 95 14 5 chr4 40387393 40387614 -143901048 + AluSg SINE Alu 1 223 -87 222 118 0 0 chr4 40387724 40387758 -143900904 + (A)n Simple_repeat Simple_repeat 1 34 0 2102 111 38 0 chr4 40387948 40388236 -143900426 - AluSx SINE Alu -13 299 1 1899 124 48 96 chr4 40388440 40388794 -143899868 + MER1B DNA MER1_type 1 337 0 272 198 148 15 chr4 40388919 40389004 -143899658 - MIR SINE MIR -73 135 42 2264 136 19 11 chr4 40389436 40389796 -143898866 - MLT1A1 LTR MaLR 0 365 3 223 303 76 50 chr4 40389961 40390080 -143898582 + MIR SINE MIR 92 213 -49 869 134 0 8 chr4 40390215 40390342 -143898320 + MER30 DNA MER1_type 105 230 0 1567 177 3 112 chr4 40390343 40390415 -143898247 - L1MDa LINE L1 -6182 358 280 2049 107 42 3 chr4 40390415 40390704 -143897958 + AluJo SINE Alu 1 300 -12 1567 177 3 112 chr4 40390704 40391015 -143897647 - L1MDa LINE L1 -6260 280 17 2154 104 47 0 chr4 40391035 40391333 -143897329 - AluSq SINE Alu -1 312 1 763 268 33 0 chr4 40391333 40391516 -143897146 - MIR SINE MIR -62 200 12 270 279 93 39 chr4 40391608 40391737 -143896925 - L2 LINE L2 -14 3299 3164 1172 183 0 23 chr4 40391846 40392065 -143896597 - AluJo SINE Alu -12 300 87 287 326 28 42 chr4 40392067 40392211 -143896451 - L2 LINE L2 -240 3032 2891 2218 104 6 31 chr4 40392402 40392720 -143895942 - AluSx SINE Alu -2 310 1 191 88 29 0 chr4 40392911 40392945 -143895717 + (GAAAA)n Simple_repeat Simple_repeat 4 38 0 350 293 140 39 chr4 40392982 40393211 -143895451 + MIR SINE MIR 8 259 -3 502 286 83 46 chr4 40393364 40393605 -143895057 - MLT1L LTR MaLR -361 254 5 299 337 151 29 chr4 40393615 40393866 -143894796 + L2 LINE L2 2335 2619 -695 634 240 89 0 chr4 40393866 40394012 -143894650 - MER5A DNA MER1_type 0 189 31 288 130 0 37 chr4 40394253 40394307 -143894355 - L1MB7 LINE L1 -10 6174 6123 2762 127 51 45 chr4 40394341 40394412 -143894250 - L1MB8 LINE L1 -1 6177 6108 2231 123 0 0 chr4 40394412 40394714 -143893948 + AluSx SINE Alu 1 302 -10 2762 127 51 45 chr4 40394714 40395131 -143893531 - L1MB8 LINE L1 -70 6108 5686 1061 179 24 63 chr4 40395166 40395418 -143893244 - AluJo SINE Alu -70 242 1 245 178 0 22 chr4 40395430 40395475 -143893187 + Alu SINE Alu 124 167 -135 2118 81 0 15 chr4 40396450 40396723 -143891939 + AluSg1 SINE Alu 39 307 -2 322 115 47 64 chr4 40397193 40397547 -143891115 + (TATAA)n Simple_repeat Simple_repeat 1 347 0 49 76 0 0 chr4 40397468 40397573 -143891089 + AT_rich Low_complexity Low_complexity 1 105 0 * 292 108 40 74 chr4 40397575 40397751 -143890911 + (TATAA)n Simple_repeat Simple_repeat 5 174 0 410 179 24 0 chr4 40397754 40397922 -143890740 + (TA)n Simple_repeat Simple_repeat 1 172 0 858 151 18 48 chr4 40397922 40398088 -143890574 - FRAM SINE Alu -17 159 1 881 152 15 15 chr4 40398105 40398237 -143890425 + FLAM_C SINE Alu 2 133 0 2324 53 7 23 chr4 40398247 40398550 -143890112 + AluY SINE Alu 5 302 -9 21 36 0 0 chr4 40398687 40398715 -143889947 + AT_rich Low_complexity Low_complexity 1 28 0 345 247 59 41 chr4 40398745 40398915 -143889747 - L1MB8 LINE L1 -2380 5428 5256 207 296 0 0 chr4 40398978 40399032 -143889630 - L2 LINE L2 -5 3308 3255 2256 87 24 0 chr4 40399112 40399401 -143889261 + AluSx SINE Alu 1 296 -16 2248 97 13 3 chr4 40399402 40399712 -143888950 + AluSp SINE Alu 1 313 0 1467 207 135 34 chr4 40399737 40400182 -143888480 - MLT1F LTR MaLR -50 492 3 824 170 69 0 chr4 40400196 40400355 -143888307 - FRAM SINE Alu -10 166 1 1650 192 21 14 chr4 40400407 40400698 -143887964 + AluJo SINE Alu 7 299 -13 1560 346 0 26 chr4 40400698 40401007 -143887655 + AluY SINE Alu 1 301 -10 1699 107 3 136 chr4 40401014 40401368 -143887294 + AluJb SINE Alu 2 308 -4 31 0 0 0 chr4 40401930 40401961 -143886701 + AT_rich Low_complexity Low_complexity 1 31 0 2329 101 0 16 chr4 40402051 40402358 -143886304 + AluSg SINE Alu 1 302 -8 1472 192 23 20 chr4 40402396 40402698 -143885964 + AluJb SINE Alu 1 303 -9 2248 114 3 3 chr4 40403009 40403316 -143885346 - AluSx SINE Alu -5 307 1 1925 170 0 3 chr4 40403438 40403750 -143884912 - AluJo SINE Alu -1 311 1 2204 98 14 3 chr4 40403868 40404163 -143884499 - AluSx SINE Alu -14 298 1 324 222 0 0 chr4 40404564 40404627 -143884035 + FRAM/FAM SINE Alu 1 62 -104 186 43 0 0 chr4 40404738 40404761 -143883901 + (A)n Simple_repeat Simple_repeat 1 23 0 413 250 8 45 chr4 40404761 40404878 -143883784 + L1MC5 LINE L1 7769 7882 -79 2226 108 3 3 chr4 40404878 40405174 -143883488 - AluSq SINE Alu -17 296 1 413 250 8 45 chr4 40405174 40405188 -143883474 + L1MC5 LINE L1 7882 7895 -66 960 118 0 15 chr4 40405652 40405787 -143882875 - FLAM_C SINE Alu 0 133 1 671 145 17 8 chr4 40405790 40405907 -143882755 + L1MD3 LINE L1 7878 7995 0 1895 123 31 14 chr4 40405950 40406242 -143882420 + L1MC1 LINE L1 6020 6316 -17 272 264 151 0 chr4 40406285 40406391 -143882271 + L1MC5 LINE L1 7810 7931 -30 2105 131 3 0 chr4 40406681 40406987 -143881675 - AluSx SINE Alu -5 307 1 258 105 0 0 chr4 40407194 40407232 -143881430 + (A)n Simple_repeat Simple_repeat 1 38 0 680 163 32 16 chr4 40407995 40408118 -143880544 - FLAM_C SINE Alu -6 127 3 461 83 17 0 chr4 40408498 40408558 -143880104 + U7 snRNA snRNA 2 62 -1 777 263 145 34 chr4 40408911 40409168 -143879494 + L1ME4a LINE L1 5525 5752 -369 1694 167 43 7 chr4 40409168 40409467 -143879195 - AluJb SINE Alu -2 310 1 777 263 145 34 chr4 40409467 40409559 -143879103 + L1ME4a LINE L1 5752 5832 -289 2536 62 3 0 chr4 40409559 40409867 -143878795 - AluY SINE Alu -2 309 1 777 263 145 34 chr4 40409867 40409878 -143878784 + L1ME4a LINE L1 5832 5840 -281 2249 111 3 0 chr4 40409878 40410185 -143878477 - AluSx SINE Alu -4 308 1 777 263 145 34 chr4 40410185 40410359 -143878303 + L1ME4a LINE L1 5840 6121 0 629 244 202 50 chr4 40410399 40410776 -143877886 + L1MC5 LINE L1 7452 7885 -76 2188 118 0 7 chr4 40411063 40411367 -143877295 + AluSx SINE Alu 1 302 -10 191 250 56 14 chr4 40411797 40411869 -143876793 - MIR SINE MIR -122 140 66 2263 99 27 0 chr4 40412027 40412320 -143876342 + AluSx SINE Alu 1 301 -11 2165 124 0 40 chr4 40412410 40412733 -143875929 + AluSg SINE Alu 1 310 0 2184 89 17 14 chr4 40412880 40413172 -143875490 + AluSp SINE Alu 6 298 -15 2309 97 0 0 chr4 40413263 40413563 -143875099 + AluSx SINE Alu 1 300 -12 1153 193 36 5 chr4 40413730 40414023 -143874639 + MER2 DNA MER2_type 1 345 0 2037 114 7 33 chr4 40414310 40414609 -143874053 - AluSx SINE Alu -21 291 1 1552 180 14 17 chr4 40414665 40414959 -143873703 + AluJo SINE Alu 11 303 -9 231 36 0 0 chr4 40414960 40414988 -143873674 + (TAGA)n Simple_repeat Simple_repeat 4 31 0 764 164 8 0 chr4 40415011 40415133 -143873529 - FLAM_C SINE Alu -7 136 14 6367 37 0 0 chr4 40415414 40416172 -143872490 + L1P LINE L1 3257 4014 -2132 3104 191 36 19 chr4 40416307 40416952 -143871710 - MLT1A2-int LTR MaLR -710 661 6 1616 214 55 28 chr4 40416957 40417321 -143871341 - MLT1A2 LTR MaLR 0 374 1 2477 62 3 3 chr4 40417404 40417709 -143870953 + AluY SINE Alu 1 305 -6 235 221 156 0 chr4 40417728 40417805 -143870857 + MLT1G3 LTR MaLR 11 99 -496 629 241 130 6 chr4 40417805 40417967 -143870695 + FRAM SINE Alu 1 176 0 925 273 106 16 chr4 40417986 40418430 -143870232 + MLT1G3 LTR MaLR 25 595 0 862 139 0 29 chr4 40418447 40418584 -143870078 + FLAM_C SINE Alu 1 133 0 40 37 0 0 chr4 40418991 40419045 -143869617 + AT_rich Low_complexity Low_complexity 1 54 0 2094 146 0 0 chr4 40419279 40419574 -143869088 - AluSx SINE Alu -17 295 1 1351 87 12 6 chr4 40419948 40420120 -143868542 + AluSg SINE Alu 1 173 -137 1230 167 83 26 chr4 40420331 40420559 -143868103 - AluJb SINE Alu -67 245 5 298 235 0 12 chr4 40420580 40420661 -143868001 - L1ME LINE L1 -345 5776 5697 2373 96 0 0 chr4 40420747 40421040 -143867622 - AluSx SINE Alu -19 293 1 32 0 0 0 chr4 40421137 40421169 -143867493 + AT_rich Low_complexity Low_complexity 1 32 0 1560 161 64 4 chr4 40421209 40421224 -143867438 - AluJb SINE Alu -15 297 284 468 0 0 0 chr4 40421224 40421276 -143867386 + (TG)n Simple_repeat Simple_repeat 1 52 0 1560 161 64 4 chr4 40421276 40421540 -143867122 - AluJb SINE Alu -28 284 1 2339 75 31 0 chr4 40421551 40421843 -143866819 - AluSc SINE Alu -8 301 1 27 49 0 0 chr4 40421921 40421962 -143866700 + AT_rich Low_complexity Low_complexity 1 41 0 2535 60 0 3 chr4 40422374 40422675 -143865987 - AluY SINE Alu -11 300 1 2131 112 25 0 chr4 40422705 40422991 -143865671 - AluSx SINE Alu -15 297 5 2259 101 6 22 chr4 40423154 40423472 -143865190 - AluSq SINE Alu 0 313 1 1455 177 30 39 chr4 40423627 40423932 -143864730 - AluJo SINE Alu -9 303 2 1785 194 7 0 chr4 40424251 40424550 -143864112 - AluJo SINE Alu -11 301 1 22 35 0 0 chr4 40424563 40424592 -143864070 + AT_rich Low_complexity Low_complexity 1 29 0 594 217 72 14 chr4 40424608 40424746 -143863916 + LTR8 LTR ERV1 1 146 -545 1737 223 35 50 chr4 40425139 40425707 -143862955 + MER57-int LTR ERV1 2120 2779 -3552 829 181 0 8 chr4 40425710 40425837 -143862825 + FLAM_C SINE Alu 2 127 -16 897 214 5 16 chr4 40425853 40426045 -143862617 + MER57-int LTR ERV1 2768 2957 -3374 643 173 50 148 chr4 40425947 40426224 -143862438 + LTR57-int LTR ERVL 792 1041 -4302 * 871 148 54 0 chr4 40426083 40426232 -143862430 + MER57-int LTR ERV1 2951 3107 -3224 678 152 0 0 chr4 40426255 40426360 -143862302 - FLAM_C SINE Alu -3 140 36 779 173 12 30 chr4 40426361 40426529 -143862133 + MER57-int LTR ERV1 3093 3257 -3074 278 234 26 0 chr4 40426510 40426587 -143862075 + MER57-int LTR ERV1 3480 3558 -2705 * 2277 115 0 10 chr4 40426602 40426914 -143861748 - AluSx SINE Alu -3 309 1 249 208 0 0 chr4 40427063 40427116 -143861546 + L1MC5 LINE L1 7609 7661 -300 1143 149 0 0 chr4 40427147 40427315 -143861347 - AluSg/x SINE Alu -11 301 134 1999 117 19 29 chr4 40427316 40427661 -143861001 - AluSx SINE Alu 0 312 1 322 241 0 25 chr4 40427663 40427742 -143860920 + MER57-int LTR ERV1 6921 6997 -540 1030 147 31 127 chr4 40427771 40427950 -143860712 + LTR54 LTR ERV1 107 302 -208 2483 71 3 0 chr4 40427950 40428258 -143860404 - AluY SINE Alu -2 309 1 1030 147 31 127 chr4 40428258 40428420 -143860242 + LTR54 LTR ERV1 302 478 -32 1352 196 0 61 chr4 40428420 40428746 -143859916 - AluJo SINE Alu -6 306 1 1030 147 31 127 chr4 40428746 40428802 -143859860 + LTR54 LTR ERV1 478 538 28 1782 163 0 17 chr4 40428802 40429096 -143859566 - AluJb SINE Alu -23 289 1 1830 180 0 0 chr4 40429096 40429391 -143859271 - AluJb SINE Alu -17 295 1 1030 147 31 127 chr4 40429391 40429458 -143859204 + LTR54 LTR ERV1 437 509 -1 2153 113 7 10 chr4 40430268 40430570 -143858092 - AluSx SINE Alu -11 301 1 1271 122 0 11 chr4 40430594 40430774 -143857888 - AluSp SINE Alu -12 301 124 2220 91 0 33 chr4 40430884 40431191 -143857471 - AluSx SINE Alu -15 297 1 865 173 0 0 chr4 40431246 40431379 -143857283 - FLAM_C SINE Alu 0 133 1 2461 77 0 6 chr4 40431380 40431691 -143856971 - AluY SINE Alu -2 309 1 1733 176 11 3 chr4 40431697 40431981 -143856681 - AluJb SINE Alu -17 295 10 1818 146 3 43 chr4 40432168 40432469 -143856193 - AluJo SINE Alu -23 289 1 2019 95 0 0 chr4 40432500 40432786 -143855876 - AluY SINE Alu 0 305 20 325 149 16 174 chr4 40432849 40432895 -143855767 - LTR37B LTR ERV1 -168 300 283 2589 42 7 0 chr4 40432895 40433201 -143855461 - AluY SINE Alu -3 308 1 325 149 16 174 chr4 40433201 40433275 -143855387 - LTR37B LTR ERV1 -185 283 199 1228 167 146 68 chr4 40433441 40433824 -143854838 + L1M4 LINE L1 4671 5083 -1063 2605 101 58 5 chr4 40433829 40434206 -143854456 - L1PA13 LINE L1 -1 6162 5766 416 188 0 0 chr4 40434216 40434296 -143854366 - AluJb SINE Alu -5 307 228 1041 139 0 0 chr4 40434308 40434452 -143854210 - AluJb SINE Alu -167 145 2 189 0 0 0 chr4 40434452 40434473 -143854189 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 951 184 0 0 chr4 40434476 40434628 -143854034 - AluJb SINE Alu -32 280 129 764 153 0 0 chr4 40434780 40434891 -143853771 - AluSq/x SINE Alu -201 111 1 1563 178 135 131 chr4 40434891 40434993 -143853669 + MLT2B1 LTR ERVL 5 105 -415 1570 173 25 11 chr4 40434993 40435271 -143853391 + AluJo SINE Alu 1 282 -30 269 26 26 0 chr4 40435276 40435314 -143853348 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2136 103 3 0 chr4 40435318 40435600 -143853062 + AluSg SINE Alu 1 283 -27 1563 178 135 131 chr4 40435600 40435998 -143852664 + MLT2B1 LTR ERVL 110 518 -2 2226 104 0 7 chr4 40436482 40436780 -143851882 - AluSx SINE Alu -16 296 1 1742 178 14 3 chr4 40436843 40437136 -143851526 - AluJo SINE Alu -16 296 1 2049 88 4 11 chr4 40437329 40437601 -143851061 + AluSq SINE Alu 13 282 -31 236 71 48 0 chr4 40437605 40437647 -143851015 + A-rich Low_complexity Low_complexity 2 45 0 2371 80 0 7 chr4 40437920 40438220 -143850442 + AluY SINE Alu 1 298 -13 2445 71 0 0 chr4 40438545 40438840 -143849822 + AluY SINE Alu 1 295 -16 186 133 0 0 chr4 40439032 40439062 -143849600 + (TCTCCC)n Simple_repeat Simple_repeat 3 32 0 955 70 0 0 chr4 40439349 40439464 -143849198 + AluSq/x SINE Alu 1 115 -197 1754 110 4 49 chr4 40439465 40439728 -143848934 + MER1B DNA MER1_type 129 339 0 187 267 0 0 chr4 40439758 40439803 -143848859 + L2 LINE L2 3203 3247 -25 2021 123 31 3 chr4 40439807 40440100 -143848562 + AluSx SINE Alu 1 301 -11 2296 97 3 10 chr4 40440100 40440400 -143848262 + AluSx SINE Alu 1 298 -14 701 192 0 31 chr4 40441432 40441562 -143847100 - FLAM_C SINE Alu -4 139 14 408 390 14 0 chr4 40441767 40441980 -143846682 + L1MEc LINE L1 150 365 -6031 2100 106 0 50 chr4 40442078 40442398 -143846264 - AluSx SINE Alu -8 304 1 806 145 0 55 chr4 40442398 40442543 -143846119 - FLAM_C SINE Alu -6 137 1 649 300 32 20 chr4 40442544 40442791 -143845871 + L1M4 LINE L1 3918 4167 -1979 564 204 0 29 chr4 40442797 40442900 -143845762 - MLT2B1 LTR ERVL -206 309 210 207 0 0 0 chr4 40442907 40442930 -143845732 + (TG)n Simple_repeat Simple_repeat 1 23 0 2149 118 0 0 chr4 40442947 40443227 -143845435 - AluSx SINE Alu -32 280 1 1382 133 9 5 chr4 40443228 40443438 -143845224 - MLT2B1 LTR ERVL -309 211 1 243 400 94 0 chr4 40443458 40443693 -143844969 + L2 LINE L2 2488 2744 -570 218 319 48 122 chr4 40443798 40444068 -143844594 + L2 LINE L2 2932 3181 -91 240 111 0 0 chr4 40444795 40444831 -143843831 + (T)n Simple_repeat Simple_repeat 1 36 0 407 342 141 8 chr4 40445173 40445407 -143843255 + L3 LINE CR1 129 393 -1184 208 274 68 41 chr4 40445436 40445509 -143843153 + MIR SINE MIR 23 97 -165 1457 151 5 0 chr4 40445732 40445951 -143842711 + AluJo SINE Alu 1 220 -92 1088 191 0 5 chr4 40445951 40446002 -143842660 + AluJb SINE Alu 86 136 -176 2177 128 0 0 chr4 40446002 40446300 -143842362 + AluSq SINE Alu 1 298 -15 1088 191 0 5 chr4 40446300 40446437 -143842225 + AluJb SINE Alu 136 273 -39 188 86 29 0 chr4 40446511 40446546 -143842116 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 826 194 0 89 chr4 40446775 40446896 -143841766 + AluJo SINE Alu 2 132 -180 237 98 0 0 chr4 40446896 40446937 -143841725 + (TA)n Simple_repeat Simple_repeat 2 42 0 2023 138 3 0 chr4 40446941 40447232 -143841430 - AluSx SINE Alu -20 292 1 826 194 0 89 chr4 40447232 40447285 -143841377 + AluJo SINE Alu 135 165 -147 1529 166 0 0 chr4 40447386 40447621 -143841041 + AluJb SINE Alu 62 296 -16 2446 81 0 0 chr4 40447622 40447917 -143840745 + AluSc SINE Alu 1 295 -14 633 281 6 11 chr4 40447917 40448095 -143840567 + L1MEc LINE L1 137 313 -6083 * 696 214 29 5 chr4 40448082 40448288 -143840374 + L1MEc LINE L1 961 1171 -5225 699 184 0 0 chr4 40448299 40448413 -143840249 + FLAM_A SINE Alu 21 134 -8 313 136 0 0 chr4 40448424 40448468 -143840194 + L1MEc LINE L1 1200 1243 -5153 365 203 13 0 chr4 40448472 40448551 -143840111 + L1MA10 LINE L1 6240 6319 -15 905 163 0 15 chr4 40448731 40448866 -143839796 + FLAM_C SINE Alu 1 133 0 204 304 0 0 chr4 40448886 40448932 -143839730 - L2 LINE L2 -90 3182 3137 1827 190 64 93 chr4 40448982 40449453 -143839209 + L1MD3 LINE L1 5175 5272 -908 542 99 0 0 chr4 40449453 40449524 -143839138 + AluJ/FLAM SINE Alu 5 75 -237 1827 190 64 93 chr4 40449524 40449918 -143838744 + L1MD3 LINE L1 5272 5676 -504 * 2353 177 57 16 chr4 40449566 40450074 -143838588 + L1MB4 LINE L1 5651 6179 -1 936 139 53 91 chr4 40450083 40450227 -143838435 + L1MB8 LINE L1 5973 6108 -70 2134 119 0 13 chr4 40450227 40450538 -143838124 - AluY SINE Alu -4 307 1 936 139 53 91 chr4 40450538 40450602 -143838060 + L1MB8 LINE L1 6108 6173 -5 311 304 54 80 chr4 40450637 40451117 -143837545 - L2 LINE L2 -203 3069 2590 1812 156 14 0 chr4 40451263 40451545 -143837117 - AluJb SINE Alu -26 286 1 1245 155 14 46 chr4 40451756 40451975 -143836687 + AluJo SINE Alu 87 298 -14 26 0 0 0 chr4 40452101 40452127 -143836535 + AT_rich Low_complexity Low_complexity 1 26 0 2261 111 0 0 chr4 40452486 40452784 -143835878 + AluSx SINE Alu 1 298 -14 968 139 76 0 chr4 40452785 40452929 -143835733 + AluSg/x SINE Alu 132 286 -26 241 287 89 25 chr4 40453016 40453173 -143835489 + L1MC/D LINE L1 5713 5879 -1929 1001 163 12 0 chr4 40453510 40453670 -143834992 - AluSp SINE Alu -4 309 148 1760 175 3 16 chr4 40453859 40454162 -143834500 - AluJb SINE Alu -13 299 1 1674 121 32 12 chr4 40455170 40455418 -143833244 + AluSx SINE Alu 1 253 -59 11787 24 0 0 chr4 40455518 40457629 -143831033 + L1PA3 LINE L1 4040 6152 -3 1892 147 3 23 chr4 40457673 40457979 -143830683 - AluSx SINE Alu -12 300 1 231 227 164 27 chr4 40458030 40458140 -143830522 - L1MC4a LINE L1 -1634 6174 6050 2490 73 3 0 chr4 40458158 40458459 -143830203 - AluSp SINE Alu -11 302 1 198 204 74 0 chr4 40458602 40458656 -143830006 + MIR SINE MIR 116 173 -89 1658 186 0 0 chr4 40458876 40459140 -143829522 - AluJb SINE Alu -48 264 1 189 0 0 0 chr4 40459150 40459171 -143829491 + (T)n Simple_repeat Simple_repeat 1 21 0 1019 251 126 19 chr4 40459267 40459503 -143829159 + MER20B DNA MER1_type 170 380 -403 1746 86 0 0 chr4 40459503 40459723 -143828939 - AluSx SINE Alu -7 305 86 1019 251 126 19 chr4 40459723 40459900 -143828762 + MER20B DNA MER1_type 380 627 -156 2277 233 146 50 chr4 40460353 40461296 -143827366 - HAL1 LINE L1 -15 2492 1459 1299 237 152 45 chr4 40461298 40461706 -143826956 - L2 LINE L2 -411 2903 2413 2494 81 0 3 chr4 40461706 40462015 -143826647 + AluSc SINE Alu 1 308 -1 1299 237 152 45 chr4 40462015 40462185 -143826477 - L2 LINE L2 -901 2413 2263 576 145 0 0 chr4 40462318 40462401 -143826261 - AluSx SINE Alu -229 84 2 2486 83 0 0 chr4 40462471 40462784 -143825878 + AluSq SINE Alu 1 313 0 1158 94 0 0 chr4 40462786 40462962 -143825700 + AluSg/x SINE Alu 135 310 0 27 29 0 0 chr4 40462987 40463021 -143825641 + AT_rich Low_complexity Low_complexity 1 34 0 309 77 0 0 chr4 40463022 40463061 -143825601 + LTR23 LTR ERV1 320 358 -79 22 35 0 0 chr4 40463066 40463095 -143825567 + AT_rich Low_complexity Low_complexity 1 29 0 1935 157 3 7 chr4 40463732 40464032 -143824630 + AluJo SINE Alu 5 303 -9 1799 152 11 0 chr4 40464041 40464324 -143824338 + AluJb SINE Alu 11 296 -16 2288 103 3 0 chr4 40464375 40464676 -143823986 + AluSx SINE Alu 1 302 -10 1017 105 13 7 chr4 40464995 40465147 -143823515 + BC200 scRNA scRNA 6 158 -42 1988 116 7 7 chr4 40465205 40465497 -143823165 - AluSx SINE Alu -20 292 1 212 281 0 47 chr4 40465821 40465885 -143822777 - MIR3 SINE MIR -41 167 107 910 94 8 16 chr4 40466217 40466345 -143822317 - AluJb SINE Alu -185 127 1 2515 51 3 10 chr4 40466358 40466670 -143821992 - AluY SINE Alu -1 310 1 1726 99 4 4 chr4 40466716 40466971 -143821691 - AluSx SINE Alu 0 305 51 264 250 40 0 chr4 40466997 40467073 -143821589 - L2 LINE L2 0 3313 3235 391 151 32 43 chr4 40467178 40467271 -143821391 + MER5A DNA MER1_type 1 92 -97 279 0 0 0 chr4 40467290 40467321 -143821341 + (TG)n Simple_repeat Simple_repeat 1 31 0 252 0 0 0 chr4 40467320 40467348 -143821314 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 224 258 0 15 chr4 40468086 40468152 -143820510 + (CGG)n Simple_repeat Simple_repeat 2 66 0 201 23 47 47 chr4 40470213 40470256 -143818406 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 24 0 0 0 chr4 40470989 40471013 -143817649 + AT_rich Low_complexity Low_complexity 1 24 0 223 325 181 0 chr4 40471329 40471412 -143817250 - MIR SINE MIR -118 144 47 2242 121 0 13 chr4 40471595 40471910 -143816752 - AluSx SINE Alu -1 311 1 2144 135 3 0 chr4 40472056 40472403 -143816259 - AluSp SINE Alu 0 348 1 740 134 30 144 chr4 40472629 40472830 -143815832 - MER20B DNA MER1_type -2 217 40 1487 105 14 5 chr4 40472851 40473060 -143815602 - AluSg/x SINE Alu -20 290 80 1463 189 38 7 chr4 40473087 40473378 -143815284 + AluJo SINE Alu 1 300 -12 2481 67 3 0 chr4 40473416 40473716 -143814946 + AluSc SINE Alu 1 301 -8 938 161 6 6 chr4 40473958 40474119 -143814543 + AluJb SINE Alu 136 296 -16 25 31 0 0 chr4 40474123 40474155 -143814507 + AT_rich Low_complexity Low_complexity 1 32 0 1977 146 7 7 chr4 40474390 40474691 -143813971 - AluJb SINE Alu -11 301 1 2061 86 6 86 chr4 40474719 40475043 -143813619 - AluSg SINE Alu -10 300 3 2244 115 0 3 chr4 40475044 40475348 -143813314 - AluSx SINE Alu -9 303 1 954 134 34 50 chr4 40475527 40475706 -143812956 - AluSg/x SINE Alu -3 309 134 1780 120 23 78 chr4 40475706 40475868 -143812794 - AluSx SINE Alu -19 293 154 2357 77 0 17 chr4 40475868 40476165 -143812497 - AluY SINE Alu -19 292 1 1780 120 23 78 chr4 40476165 40476311 -143812351 - AluSx SINE Alu -158 154 2 1396 157 149 4 chr4 40476321 40476582 -143812080 - AluSg SINE Alu -1 299 1 1964 132 13 10 chr4 40476753 40477057 -143811605 - AluSx SINE Alu -5 307 3 1834 152 45 0 chr4 40477059 40477349 -143811313 - AluSx SINE Alu -9 303 1 1921 135 50 0 chr4 40477387 40477669 -143810993 - AluJo SINE Alu -16 296 1 2186 91 10 14 chr4 40477753 40478049 -143810613 - AluSp SINE Alu -18 295 1 303 247 227 27 chr4 40478289 40478439 -143810223 - L1ME3A LINE L1 -94 6076 5897 318 264 194 14 chr4 40478512 40478656 -143810006 - MIR3 SINE MIR -7 201 32 207 271 189 41 chr4 40478860 40478982 -143809680 + MIR SINE MIR 7 146 -116 1649 138 173 0 chr4 40479246 40479529 -143809133 + MER44D DNA MER2_type 2 603 -6 25 0 0 0 chr4 40479911 40479936 -143808726 + AT_rich Low_complexity Low_complexity 1 25 0 599 94 35 0 chr4 40479936 40480021 -143808641 - HY3 scRNA scRNA -1 100 13 225 0 0 0 chr4 40480107 40480132 -143808530 + (ATTG)n Simple_repeat Simple_repeat 2 26 0 1521 128 67 67 chr4 40480136 40480418 -143808244 - AluJo SINE Alu -30 282 1 223 341 96 22 chr4 40480441 40480576 -143808086 - MIR SINE MIR -88 174 30 25 75 0 0 chr4 40480912 40480965 -143807697 + AT_rich Low_complexity Low_complexity 1 53 0 2574 62 0 0 chr4 40481005 40481310 -143807352 - AluY SINE Alu -5 306 2 1999 126 30 0 chr4 40481482 40481783 -143806879 - AluSg SINE Alu 0 309 1 293 247 105 53 chr4 40481802 40481925 -143806737 - L1ME LINE L1 -689 5473 5341 2148 109 7 10 chr4 40481925 40482227 -143806435 - AluSx SINE Alu -11 301 1 293 247 105 53 chr4 40482227 40482256 -143806406 - L1ME LINE L1 -821 5341 5315 288 130 0 2 chr4 40482266 40482312 -143806350 + AluSp/q SINE Alu 254 294 -9 231 143 20 0 chr4 40482350 40482399 -143806263 - Alu SINE Alu -4 295 246 707 158 26 0 chr4 40482406 40482520 -143806142 - AluSq/x SINE Alu -194 118 2 1140 147 78 4 chr4 40482613 40482845 -143805817 - L1MB3 LINE L1 0 6183 5935 1498 147 33 90 chr4 40482955 40483255 -143805407 - AluJb SINE Alu -20 292 10 303 67 93 0 chr4 40483510 40483563 -143805099 - L1MB3 LINE L1 -273 5910 5859 306 0 0 0 chr4 40483581 40483615 -143805047 + (TA)n Simple_repeat Simple_repeat 2 35 0 2136 108 3 17 chr4 40483615 40483912 -143804750 - AluSc SINE Alu -16 293 1 1443 156 3 81 chr4 40483923 40484089 -143804573 - AluJo SINE Alu -25 287 154 2573 40 3 13 chr4 40484089 40484391 -143804271 - AluY SINE Alu -12 299 1 1443 156 3 81 chr4 40484391 40484532 -143804130 - AluJo SINE Alu -158 154 4 988 104 0 15 chr4 40484538 40484673 -143803989 - AluSq/x SINE Alu -179 133 1 24 0 0 0 chr4 40484905 40484929 -143803733 + AT_rich Low_complexity Low_complexity 1 24 0 1575 184 0 36 chr4 40485308 40485612 -143803050 - AluJb SINE Alu -19 293 1 1330 206 34 17 chr4 40485650 40485779 -143802883 + AluJo SINE Alu 9 134 -178 2159 129 3 3 chr4 40485779 40486082 -143802580 + AluSx SINE Alu 1 303 -9 1330 206 34 17 chr4 40486082 40486243 -143802419 + AluJo SINE Alu 134 304 -8 2237 122 10 0 chr4 40486288 40486592 -143802070 - AluSg SINE Alu -3 307 1 4884 96 104 114 chr4 40486730 40488133 -143800529 - pTR5 LTR ERV1 0 2438 740 1679 193 7 10 chr4 40489812 40490108 -143798554 - AluJo SINE Alu -17 295 1 271 295 70 26 chr4 40490154 40490310 -143798352 - MLT1J LTR MaLR -335 176 14 187 336 43 17 chr4 40490314 40490430 -143798232 - L2 LINE L2 -644 2670 2552 1906 133 0 11 chr4 40490449 40490720 -143797942 - AluJo SINE Alu -44 268 1 1394 178 34 41 chr4 40490870 40491163 -143797499 + AluJb SINE Alu 1 291 -21 547 227 44 46 chr4 40491341 40491559 -143797103 - L1MC5 LINE L1 -547 7495 7261 1112 209 80 8 chr4 40491607 40491846 -143796816 - MER6 DNA MER2_type -609 256 1 1886 107 40 0 chr4 40491848 40492101 -143796561 - AluSx SINE Alu -1 311 49 1666 172 17 14 chr4 40492103 40492394 -143796268 - AluJb SINE Alu -8 304 13 2314 107 0 0 chr4 40492421 40492731 -143795931 - AluY SINE Alu -1 310 1 2068 135 0 0 chr4 40492887 40493176 -143795486 - AluSq SINE Alu -24 289 1 1690 151 58 14 chr4 40493177 40493468 -143795194 - AluJo SINE Alu -8 304 1 263 122 0 0 chr4 40493468 40493509 -143795153 - L1MCa LINE L1 -5571 993 953 1865 139 0 60 chr4 40493622 40493938 -143794724 + AluJb SINE Alu 1 297 -15 1387 215 42 67 chr4 40493939 40494252 -143794410 - L1MCa LINE L1 -5108 937 680 1681 167 33 23 chr4 40494252 40494557 -143794105 + AluJb SINE Alu 1 308 -4 1387 215 42 67 chr4 40494557 40494881 -143793781 - L1MCa LINE L1 -5365 680 349 1365 179 0 0 chr4 40494881 40495093 -143793569 - AluJo SINE Alu -100 212 1 925 192 73 26 chr4 40495102 40495336 -143793326 - MLT1C LTR MaLR -24 443 199 828 111 0 0 chr4 40495339 40495447 -143793215 - AluSq/x SINE Alu -205 108 1 916 128 0 8 chr4 40495534 40495667 -143792995 - FLAM_C SINE Alu -6 137 6 2053 137 7 3 chr4 40495750 40496049 -143792613 - AluSx SINE Alu -12 300 1 419 144 39 19 chr4 40496371 40496475 -143792187 + HsTC2 DNA Tc2 1557 1662 -236 861 213 35 35 chr4 40496530 40496732 -143791930 - AluJb SINE Alu -29 283 82 2029 96 0 31 chr4 40496855 40497148 -143791514 - AluY SINE Alu -27 284 1 1051 90 0 0 chr4 40497148 40497282 -143791380 - AluSg1 SINE Alu -175 134 1 257 180 0 0 chr4 40497283 40497333 -143791329 + L1ME LINE L1 5631 5680 -486 1799 158 11 3 chr4 40497449 40497733 -143790929 + AluJo SINE Alu 2 287 -25 910 144 11 86 chr4 40497743 40497930 -143790732 + AluJb SINE Alu 129 301 -11 692 77 0 0 chr4 40498141 40498232 -143790430 + AluSg SINE Alu 2 92 -218 1078 88 40 0 chr4 40498232 40498380 -143790282 + AluY SINE Alu 126 279 -32 623 186 0 0 chr4 40498493 40498595 -143790067 - AluJb SINE Alu -209 103 2 1859 133 14 21 chr4 40498758 40499044 -143789618 + AluJb SINE Alu 15 298 -14 1858 151 17 3 chr4 40499044 40499336 -143789326 + AluSg SINE Alu 1 296 -14 330 278 32 8 chr4 40499494 40499620 -143789042 - AluY SINE Alu -10 291 163 1002 157 5 56 chr4 40499720 40499936 -143788726 + AluSc SINE Alu 99 303 -6 811 117 0 0 chr4 40499940 40500051 -143788611 - FLAM_C SINE Alu -32 111 1 2062 103 57 7 chr4 40500285 40500566 -143788096 - AluSx SINE Alu -17 295 1 382 146 15 7 chr4 40500928 40501127 -143787535 + AluJo SINE Alu 38 276 -26 370 234 16 0 chr4 40501129 40501253 -143787409 + (TG)n Simple_repeat Simple_repeat 1 126 0 2253 79 7 0 chr4 40501457 40501771 -143786891 + AluY SINE Alu 1 316 0 1217 132 6 0 chr4 40501784 40501958 -143786704 + AluSq SINE Alu 1 175 -138 250 289 0 0 chr4 40501960 40502036 -143786626 + L1MB7 LINE L1 6084 6159 -25 2197 130 0 0 chr4 40502136 40502436 -143786226 - AluSx SINE Alu -12 300 1 2323 104 0 0 chr4 40502926 40503224 -143785438 + AluSg SINE Alu 1 298 -12 933 165 10 72 chr4 40503345 40503459 -143785203 - AluJo SINE Alu -66 246 147 414 0 0 0 chr4 40503459 40503505 -143785157 + (TA)n Simple_repeat Simple_repeat 1 46 0 933 165 10 72 chr4 40503505 40503584 -143785078 - AluJo SINE Alu -165 147 65 1623 121 89 39 chr4 40503831 40504112 -143784550 + AluSg SINE Alu 1 295 -15 664 196 108 39 chr4 40504127 40504331 -143784331 + MIR SINE MIR 34 251 -11 1250 117 27 0 chr4 40504651 40504865 -143783797 - AluSp SINE Alu 0 347 126 2727 42 0 3 chr4 40504865 40505177 -143783485 - AluY SINE Alu 0 311 1 2059 143 10 0 chr4 40505434 40505735 -143782927 - AluSq SINE Alu -9 304 1 1885 138 3 18 chr4 40505749 40506031 -143782631 - AluSx SINE Alu -21 291 14 21 57 0 0 chr4 40506625 40506660 -143782002 + AT_rich Low_complexity Low_complexity 1 35 0 2300 97 0 0 chr4 40507217 40507506 -143781156 - AluSg SINE Alu -19 291 3 2543 60 3 3 chr4 40507616 40507917 -143780745 - AluY SINE Alu -10 301 1 1313 201 25 36 chr4 40507936 40508215 -143780447 + AluJb SINE Alu 17 292 -20 256 353 0 0 chr4 40508277 40508362 -143780300 - L2 LINE L2 0 3272 3188 211 294 110 22 chr4 40508982 40509118 -143779544 - L2 LINE L2 -926 2388 2241 1974 141 10 7 chr4 40509135 40509432 -143779230 + AluSx SINE Alu 1 298 -14 2280 65 0 88 chr4 40509439 40509778 -143778884 + AluY SINE Alu 1 309 -2 192 200 0 0 chr4 40509801 40509841 -143778821 + GA-rich Low_complexity Low_complexity 1 40 0 473 291 7 33 chr4 40509940 40510091 -143778571 - AluJo SINE Alu -41 271 125 2187 117 0 13 chr4 40510248 40510557 -143778105 - AluSg SINE Alu -5 305 1 308 147 167 20 chr4 40510589 40510691 -143777971 - HsTC2 DNA Tc2 -51 1847 1731 315 184 0 17 chr4 40510694 40510765 -143777897 + AluS SINE Alu 1 57 -246 911 107 15 0 chr4 40510956 40511087 -143777575 + BC200 scRNA scRNA 2 134 -66 1495 207 0 14 chr4 40511187 40511482 -143777180 - AluJo SINE Alu -21 291 1 275 235 108 0 chr4 40511521 40511623 -143777039 - L1MDa LINE L1 -3272 3268 3156 466 188 0 0 chr4 40511628 40511708 -143776954 - FRAM SINE Alu -50 126 47 2336 94 3 19 chr4 40511770 40512079 -143776583 + AluSx SINE Alu 1 304 -8 468 241 96 54 chr4 40512079 40512266 -143776396 - L1MDa LINE L1 -3461 3079 2876 2240 98 7 3 chr4 40512266 40512563 -143776099 - AluSp SINE Alu -15 298 1 468 241 96 54 chr4 40512563 40512636 -143776026 - L1MDa LINE L1 -3664 2876 2808 1531 159 0 23 chr4 40512638 40512813 -143775849 - AluJb SINE Alu -10 302 133 2174 101 10 7 chr4 40512813 40513111 -143775551 - AluSx SINE Alu -13 299 1 1531 159 0 23 chr4 40513111 40513199 -143775463 - AluJb SINE Alu -179 133 45 2227 125 0 0 chr4 40513211 40513515 -143775147 - AluSx SINE Alu -8 304 1 324 167 61 0 chr4 40513516 40513582 -143775080 - L1MDa LINE L1 -3927 2613 2544 2010 143 6 13 chr4 40513600 40513914 -143774748 - AluSx SINE Alu 0 312 1 2089 127 3 3 chr4 40513930 40514244 -143774418 - AluSq SINE Alu 0 314 1 344 286 261 14 chr4 40514453 40514642 -143774020 + L2 LINE L2 1299 1440 -1874 2216 110 0 13 chr4 40514642 40514942 -143773720 - AluSg SINE Alu -14 296 1 344 286 261 14 chr4 40514942 40515105 -143773557 + L2 LINE L2 1440 1738 -1576 211 291 0 0 chr4 40515106 40515161 -143773501 - MIR SINE MIR -198 64 10 1387 75 0 0 chr4 40515184 40515358 -143773304 - AluY SINE Alu -9 302 129 2250 95 3 3 chr4 40515463 40515758 -143772904 + AluY SINE Alu 1 295 -16 1327 172 82 53 chr4 40515920 40516223 -143772439 + AluJb SINE Alu 1 312 0 1144 206 81 0 chr4 40516351 40516574 -143772088 - AluJb SINE Alu -71 241 1 1647 183 67 0 chr4 40516616 40516901 -143771761 + AluJb SINE Alu 1 304 -8 1779 183 40 108 chr4 40516919 40517098 -143771564 + MSTA LTR MaLR 1 191 -237 2248 105 7 0 chr4 40517098 40517394 -143771268 + AluSp SINE Alu 1 298 -15 1852 147 39 29 chr4 40517403 40517710 -143770952 + AluSx SINE Alu 1 310 -2 1939 114 25 0 chr4 40517719 40517999 -143770663 + AluSg SINE Alu 1 287 -23 1779 183 40 108 chr4 40517999 40518253 -143770409 + MSTA LTR MaLR 207 423 -5 733 204 0 0 chr4 40518287 40518419 -143770243 + AluJo SINE Alu 3 134 -178 261 0 0 0 chr4 40518436 40518465 -143770197 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1997 104 0 24 chr4 40518469 40518756 -143769906 - AluSg1 SINE Alu -29 280 1 1859 199 0 0 chr4 40519338 40519650 -143769012 - 7SLRNA srpRNA srpRNA -8 312 1 403 254 43 7 chr4 40519695 40519829 -143768833 - L1ME3 LINE L1 -52 6110 5972 182 128 43 0 chr4 40519830 40519877 -143768785 + T-rich Low_complexity Low_complexity 2 50 0 1276 29 0 0 chr4 40519897 40520034 -143768628 - AluY SINE Alu -174 137 1 1756 95 4 4 chr4 40520080 40520335 -143768327 - AluSx SINE Alu 0 305 51 264 250 40 0 chr4 40520361 40520437 -143768225 - L2 LINE L2 0 3313 3235 391 151 32 43 chr4 40520542 40520635 -143768027 + MER5A DNA MER1_type 1 92 -97 264 30 0 0 chr4 40520654 40520687 -143767975 + (TG)n Simple_repeat Simple_repeat 1 33 0 180 0 0 0 chr4 40520686 40520706 -143767956 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 259 261 0 0 chr4 40521444 40521509 -143767153 + (CGG)n Simple_repeat Simple_repeat 2 66 0 201 23 47 47 chr4 40523570 40523613 -143765049 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 270 154 31 15 chr4 40524091 40524156 -143764506 + L1MC4a LINE L1 5871 5936 -1872 24 0 0 0 chr4 40524349 40524373 -143764289 + AT_rich Low_complexity Low_complexity 1 24 0 223 325 181 0 chr4 40524689 40524772 -143763890 - MIR SINE MIR -118 144 47 2242 121 0 13 chr4 40524955 40525270 -143763392 - AluSx SINE Alu -1 311 1 2373 103 3 0 chr4 40525421 40525731 -143762931 - AluSp SINE Alu -2 311 1 740 134 30 144 chr4 40525957 40526158 -143762504 - MER20B DNA MER1_type -2 217 40 1487 105 14 5 chr4 40526179 40526388 -143762274 - AluSg/x SINE Alu -20 292 82 899 192 44 11 chr4 40526415 40526597 -143762065 + AluJo SINE Alu 1 188 -124 294 95 0 0 chr4 40526718 40526760 -143761902 + (GAAAA)n Simple_repeat Simple_repeat 4 45 0 2174 100 7 13 chr4 40526876 40527039 -143761623 - AluSx SINE Alu -15 297 135 2271 90 0 32 chr4 40527039 40527401 -143761261 - AluY SINE Alu 0 311 1 2174 100 7 13 chr4 40527401 40527536 -143761126 - AluSx SINE Alu -177 135 1 2602 40 0 7 chr4 40527765 40528066 -143760596 - AluY SINE Alu -12 299 1 770 211 0 25 chr4 40528380 40528541 -143760121 + AluJo SINE Alu 2 158 -154 7217 137 17 30 chr4 40528541 40529808 -143758854 + L1PA7 LINE L1 775 2025 -4121 14224 80 2 7 chr4 40529808 40531798 -143756864 + L1PA7 LINE L1 3464 5463 -691 2428 92 0 0 chr4 40531798 40532103 -143756559 + AluY SINE Alu 1 305 -6 14224 80 2 7 chr4 40532103 40532792 -143755870 + L1PA7 LINE L1 5463 6154 0 2366 98 3 0 chr4 40532804 40533109 -143755553 + AluSx SINE Alu 1 306 -6 1165 127 0 0 chr4 40533109 40533259 -143755403 + AluJo SINE Alu 134 283 -29 248 270 0 29 chr4 40533339 40533428 -143755234 - MIR SINE MIR -85 123 38 714 160 0 17 chr4 40533469 40533588 -143755074 + FLAM_C SINE Alu 2 118 -25 25 51 0 0 chr4 40533593 40533632 -143755030 + AT_rich Low_complexity Low_complexity 1 39 0 625 258 220 32 chr4 40533675 40534171 -143754491 - L3 LINE CR1 -601 976 388 183 42 0 0 chr4 40534227 40534251 -143754411 + (TG)n Simple_repeat Simple_repeat 2 25 0 1139 74 0 0 chr4 40534389 40534524 -143754138 - AluSc SINE Alu -174 135 1 209 221 162 78 chr4 40534740 40534894 -143753768 + MIR SINE MIR 96 262 0 272 321 18 37 chr4 40534941 40535050 -143753612 - MER5A DNA MER1_type -1 188 82 636 306 174 34 chr4 40535194 40535887 -143752775 - L2 LINE L2 -1 3312 2527 2309 110 3 0 chr4 40536188 40536497 -143752165 + AluSx SINE Alu 1 310 -2 248 184 0 20 chr4 40536805 40536854 -143751808 - MER44D DNA MER2_type -1 608 561 722 167 0 62 chr4 40536854 40536998 -143751664 + AluJo SINE Alu 2 136 -176 1426 102 127 36 chr4 40537010 40537285 -143751377 - MER44D DNA MER2_type -39 570 1 2198 99 7 0 chr4 40539796 40540079 -143748583 + AluSx SINE Alu 1 285 -27 249 57 0 0 chr4 40540959 40540994 -143747668 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2076 69 0 101 chr4 40540996 40541314 -143747348 - AluY SINE Alu -25 286 1 1988 138 10 7 chr4 40541321 40541618 -143747044 - AluSx SINE Alu -14 298 1 211 294 110 22 chr4 40541635 40541771 -143746891 + L2 LINE L2 2241 2388 -926 256 353 0 0 chr4 40542391 40542476 -143746186 + L2 LINE L2 3188 3272 0 1327 197 25 36 chr4 40542538 40542817 -143745845 - AluJb SINE Alu -20 292 17 1840 106 98 7 chr4 40542836 40543111 -143745551 + AluSx SINE Alu 1 300 -12 466 219 159 7 chr4 40543565 40543716 -143744946 - MIR SINE MIR -17 245 72 326 113 81 0 chr4 40543777 40543839 -143744823 + L2 LINE L2 3173 3239 -74 1896 186 0 0 chr4 40544111 40544417 -143744245 - AluSx SINE Alu -6 306 1 21 0 0 0 chr4 40544494 40544515 -143744147 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 40544681 40544703 -143743959 + AT_rich Low_complexity Low_complexity 1 22 0 2245 120 3 0 chr4 40544772 40545072 -143743590 - AluSx SINE Alu -11 301 1 265 307 47 31 chr4 40545155 40545282 -143743380 - MIR SINE MIR -114 148 20 1564 149 111 0 chr4 40545545 40545806 -143742856 - AluSg SINE Alu -12 298 9 1495 181 3 50 chr4 40545955 40546258 -143742404 + AluJb SINE Alu 1 289 -23 1152 147 6 0 chr4 40546638 40546815 -143741847 - AluSg/x SINE Alu -1 311 134 2542 59 0 3 chr4 40546816 40547120 -143741542 - AluY SINE Alu -8 303 1 2175 100 7 3 chr4 40547619 40547908 -143740754 + AluSq SINE Alu 1 290 -23 512 246 146 6 chr4 40549705 40549876 -143738786 - MIR SINE MIR -55 207 13 715 256 64 12 chr4 40549924 40550098 -143738564 - AluJo SINE Alu -5 307 127 1990 125 16 13 chr4 40550102 40550413 -143738249 - AluSx SINE Alu 0 312 1 2358 61 0 14 chr4 40550472 40550768 -143737894 - AluY SINE Alu -19 292 1 2378 84 0 0 chr4 40550880 40551178 -143737484 - AluSg SINE Alu -7 303 6 691 250 0 0 chr4 40551190 40551326 -143737336 - FLAM_C SINE Alu -6 137 2 1203 78 12 6 chr4 40551829 40551996 -143736666 + AluY SINE Alu 131 298 -13 2569 57 0 3 chr4 40552019 40552319 -143736343 + AluY SINE Alu 1 299 -12 2284 97 0 0 chr4 40552429 40552718 -143735944 + AluSg SINE Alu 3 291 -19 21 57 0 0 chr4 40553275 40553310 -143735352 + AT_rich Low_complexity Low_complexity 1 35 0 1874 154 3 17 chr4 40553893 40554186 -143734476 + AluSx SINE Alu 3 291 -21 2041 143 10 0 chr4 40554200 40554501 -143734161 + AluSq SINE Alu 1 304 -9 339 214 232 6 chr4 40554711 40554758 -143733904 - L1MC5 LINE L1 -32 7929 7894 2573 43 0 3 chr4 40554758 40555057 -143733605 + AluY SINE Alu 1 298 -13 339 214 232 6 chr4 40555057 40555177 -143733485 - L1MC5 LINE L1 -67 7894 7724 2292 81 0 3 chr4 40555354 40555688 -143732974 + AluY SINE Alu 1 333 0 34 24 0 0 chr4 40555731 40555772 -143732890 + AT_rich Low_complexity Low_complexity 1 41 0 595 179 8 49 chr4 40555772 40555895 -143732767 - FLAM_C SINE Alu -25 118 1 230 83 0 56 chr4 40555903 40555939 -143732723 + HSMAR1 DNA Mariner 1 34 -1253 21 0 0 0 chr4 40556597 40556618 -143732044 + AT_rich Low_complexity Low_complexity 1 21 0 308 333 8 60 chr4 40556895 40557012 -143731650 - L2 LINE L2 -26 3246 3136 2409 181 35 0 chr4 40557909 40558339 -143730323 - L1MB3 LINE L1 -1 6182 5738 1298 100 0 6 chr4 40558342 40558522 -143730140 - AluY SINE Alu -8 303 125 1878 89 0 0 chr4 40558530 40558766 -143729896 - AluSg/x SINE Alu -11 301 66 25 31 0 0 chr4 40558911 40558943 -143729719 + AT_rich Low_complexity Low_complexity 1 32 0 851 211 0 26 chr4 40558963 40559119 -143729543 - FRAM SINE Alu -21 155 4 903 152 0 36 chr4 40559227 40559365 -143729297 + FLAM_C SINE Alu 1 133 0 217 358 11 0 chr4 40559398 40559493 -143729169 - L3 LINE CR1 -163 1414 1319 29 47 0 0 chr4 40559518 40559561 -143729101 + AT_rich Low_complexity Low_complexity 1 43 0 1545 178 34 17 chr4 40560108 40560231 -143728431 + AluSx SINE Alu 1 120 -192 183 42 0 0 chr4 40560231 40560255 -143728407 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1545 178 34 17 chr4 40560255 40560423 -143728239 + AluSx SINE Alu 120 297 -15 2327 93 17 0 chr4 40560646 40560946 -143727716 + AluSx SINE Alu 1 305 -7 717 241 0 0 chr4 40561289 40561422 -143727240 - AluJo SINE Alu -178 134 2 1945 148 3 22 chr4 40561457 40561775 -143726887 - AluJb SINE Alu 0 312 1 772 163 0 31 chr4 40561825 40561954 -143726708 - FLAM_C SINE Alu 0 143 19 1064 175 0 10 chr4 40562054 40562248 -143726414 + AluSg/x SINE Alu 121 312 0 1194 70 16 81 chr4 40562381 40562567 -143726095 - AluY SINE Alu -11 300 127 2614 58 0 0 chr4 40562572 40562883 -143725779 - AluY SINE Alu 0 311 1 847 193 0 0 chr4 40562973 40563113 -143725549 + MER46A DNA MER2_type 2 141 -95 879 184 0 46 chr4 40563117 40563291 -143725371 + FRAM SINE Alu 1 166 0 1115 202 46 5 chr4 40563358 40563576 -143725086 + AluJb SINE Alu 5 231 -81 872 86 0 9 chr4 40564085 40564201 -143724461 + AluSq/x SINE Alu 1 115 -197 429 145 0 0 chr4 40564216 40564285 -143724377 + AluYb8 SINE Alu 229 297 -21 315 350 84 15 chr4 40564306 40564509 -143724153 - L2 LINE L2 -548 2766 2550 1641 148 19 4 chr4 40564783 40565039 -143723623 - AluJb SINE Alu -37 275 16 191 244 0 0 chr4 40565040 40565085 -143723577 + MIR SINE MIR 192 236 -26 717 255 75 19 chr4 40566484 40566696 -143721966 + MIR SINE MIR 4 227 -35 1403 152 18 0 chr4 40566696 40566913 -143721749 - AluJb SINE Alu -7 305 85 2492 93 0 0 chr4 40567261 40567574 -143721088 - AluSq SINE Alu 0 313 1 1474 267 166 13 chr4 40568027 40568644 -143720018 + L2 LINE L2 2003 2735 -579 2177 142 0 0 chr4 40568644 40568953 -143719709 + AluSx SINE Alu 2 310 -2 1474 267 166 13 chr4 40568953 40569014 -143719648 + L2 LINE L2 2735 2785 -529 2081 121 0 22 chr4 40569516 40569831 -143718831 - AluSx SINE Alu -4 308 1 623 215 144 63 chr4 40570017 40570141 -143718521 + L1ME LINE L1 5385 5498 -664 2353 98 0 16 chr4 40570141 40570458 -143718204 + AluSx SINE Alu 1 312 0 623 215 144 63 chr4 40570458 40570684 -143717978 + L1ME LINE L1 5498 5769 -393 2539 174 40 65 chr4 40570799 40571403 -143717259 - L1M3 LINE L1 -404 5779 5161 839 168 0 0 chr4 40571403 40571528 -143717134 - FLAM_A SINE Alu -4 129 5 2539 174 40 65 chr4 40571528 40571560 -143717102 - L1M3 LINE L1 -1022 5161 5130 2141 134 3 6 chr4 40571560 40571873 -143716789 - AluSx SINE Alu 0 312 1 2539 174 40 65 chr4 40571873 40572095 -143716567 - L1M3 LINE L1 -1053 5130 4941 2245 72 20 10 chr4 40572107 40572445 -143716217 - AluY SINE Alu 0 311 1 28 0 0 0 chr4 40572668 40572696 -143715966 + AT_rich Low_complexity Low_complexity 1 28 0 1987 116 0 47 chr4 40572978 40573297 -143715365 + AluSx SINE Alu 4 307 -5 801 162 0 0 chr4 40573387 40573504 -143715158 - AluJb SINE Alu -195 117 1 1065 134 35 6 chr4 40573504 40573676 -143714986 - L1M2 LINE L1 -683 5608 5432 1458 161 124 22 chr4 40573676 40573950 -143714712 - AluSx SINE Alu -6 306 5 366 161 0 0 chr4 40573961 40574017 -143714645 - MER5A DNA MER1_type 0 189 134 243 140 0 0 chr4 40574026 40574076 -143714586 + (T)n Simple_repeat Simple_repeat 1 50 0 381 170 217 19 chr4 40576512 40576618 -143712044 - MER5A DNA MER1_type -62 127 1 1700 156 22 0 chr4 40576683 40576959 -143711703 - AluSx SINE Alu -30 282 1 667 180 47 0 chr4 40576959 40577087 -143711575 + MER105 DNA DNA 70 203 -1 1868 149 0 48 chr4 40577111 40577426 -143711236 + AluJb SINE Alu 12 311 -1 2514 25 0 0 chr4 40577569 40577851 -143710811 + AluY SINE Alu 1 282 -29 198 0 0 0 chr4 40577851 40577873 -143710789 + (CTAAA)n Simple_repeat Simple_repeat 3 24 0 1766 147 3 33 chr4 40577945 40578251 -143710411 + AluSx SINE Alu 1 297 -15 2216 86 0 32 chr4 40578251 40578565 -143710097 + AluY SINE Alu 1 304 -7 298 216 159 0 chr4 40579308 40579396 -143709266 + MER58B DNA MER1_type 231 332 -9 1879 157 3 10 chr4 40579397 40579691 -143708971 + AluSx SINE Alu 1 292 -20 286 297 150 12 chr4 40579750 40579996 -143708666 + L2 LINE L2 1998 2277 -1037 26 74 0 0 chr4 40580896 40580950 -143707712 + AT_rich Low_complexity Low_complexity 1 54 0 1387 145 63 0 chr4 40581831 40582052 -143706610 + AluJb SINE Alu 73 307 -5 207 0 0 0 chr4 40585025 40585048 -143703614 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 254 211 213 43 chr4 40587036 40587180 -143701482 + MIR SINE MIR 40 204 -58 1843 132 7 7 chr4 40587623 40587896 -143700766 + AluSx SINE Alu 1 273 -39 833 190 25 12 chr4 40588136 40588299 -143700363 + FRAM SINE Alu 6 170 -6 2295 94 0 17 chr4 40588309 40588607 -143700055 + AluSg SINE Alu 3 295 -15 2042 95 20 34 chr4 40588610 40588904 -143699758 + AluSq SINE Alu 1 290 -23 1885 119 0 43 chr4 40589369 40589505 -143699157 + AluSq SINE Alu 1 120 -193 2030 118 16 39 chr4 40589505 40589810 -143698852 + AluSx SINE Alu 1 298 -14 1885 119 0 43 chr4 40589810 40589950 -143698712 + AluSq SINE Alu 120 265 -48 1789 64 14 0 chr4 40589954 40590173 -143698489 + AluSg/x SINE Alu 73 294 -16 2197 101 0 3 chr4 40590374 40590670 -143697992 + AluSx SINE Alu 1 295 -17 1689 153 3 28 chr4 40590746 40591034 -143697628 + AluJb SINE Alu 14 294 -18 1802 88 88 8 chr4 40591276 40591571 -143697091 - AluSp SINE Alu 0 316 1 307 295 127 34 chr4 40592046 40592283 -143696379 + HAL1 LINE L1 1 259 -2248 2286 47 82 0 chr4 40592367 40592646 -143696016 + AluY SINE Alu 1 302 -9 318 229 73 9 chr4 40593116 40593225 -143695437 + HAL1 LINE L1 1451 1566 -941 1082 221 47 37 chr4 40593225 40593387 -143695275 + AluJo SINE Alu 1 169 -133 194 0 39 0 chr4 40593387 40593413 -143695249 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 1082 221 47 37 chr4 40593413 40593549 -143695113 + AluJo SINE Alu 169 302 0 523 267 136 62 chr4 40593571 40593945 -143694717 + HAL1 LINE L1 1632 2033 -474 737 35 0 0 chr4 40593963 40594050 -143694612 + L1PA4 LINE L1 6066 6152 -3 2311 76 0 3 chr4 40594203 40594491 -143694171 + AluY SINE Alu 1 287 -24 422 83 14 0 chr4 40594491 40594563 -143694099 + (TA)n Simple_repeat Simple_repeat 1 73 0 953 160 64 0 chr4 40594566 40594722 -143693940 + AluJb SINE Alu 127 292 -20 728 129 60 9 chr4 40594733 40594849 -143693813 + FLAM_C SINE Alu 2 123 -20 308 141 141 39 chr4 40594868 40594946 -143693716 + L1MA9 LINE L1 6227 6312 0 613 191 17 0 chr4 40594946 40595061 -143693601 - L1MB7 LINE L1 -58 6126 6010 21 0 0 0 chr4 40595069 40595090 -143693572 + AT_rich Low_complexity Low_complexity 1 21 0 2484 54 0 7 chr4 40595258 40595554 -143693108 + AluSq SINE Alu 1 294 -19 229 260 42 0 chr4 40595562 40595658 -143693004 - L1MC4 LINE L1 -1339 6703 6604 1784 179 3 3 chr4 40595724 40596021 -143692641 + AluJb SINE Alu 1 297 -15 1432 171 9 65 chr4 40596268 40596589 -143692073 + AluJb SINE Alu 1 303 -9 243 195 0 0 chr4 40596643 40596684 -143691978 + HAL1 LINE L1 794 834 -1673 1308 153 0 26 chr4 40596709 40596938 -143691724 + AluJb SINE Alu 82 304 -8 1742 97 4 13 chr4 40597036 40597273 -143691389 + AluSg SINE Alu 1 235 -75 1383 183 18 5 chr4 40597392 40597616 -143691046 + AluSc SINE Alu 64 290 -19 1979 130 10 0 chr4 40597737 40598029 -143690633 - AluSx SINE Alu 0 312 18 664 161 0 0 chr4 40598041 40598134 -143690528 - AluS SINE Alu -213 99 7 2147 118 0 16 chr4 40598217 40598530 -143690132 - AluSc SINE Alu -1 308 1 24 0 0 0 chr4 40598530 40598554 -143690108 + AT_rich Low_complexity Low_complexity 1 24 0 2229 88 0 17 chr4 40598558 40598853 -143689809 - AluSp SINE Alu -23 290 1 1871 127 14 3 chr4 40598855 40599147 -143689515 - AluSq SINE Alu -18 295 1 2097 128 3 0 chr4 40599209 40599505 -143689157 - AluSx SINE Alu -9 303 7 2178 102 0 13 chr4 40599519 40599822 -143688840 - AluY SINE Alu -12 299 1 1692 178 40 3 chr4 40599859 40600157 -143688505 + AluJo SINE Alu 1 309 -3 360 170 28 102 chr4 40600205 40600334 -143688328 + FRAM SINE Alu 71 157 -9 1772 114 0 117 chr4 40600340 40600452 -143688210 + AluSx SINE Alu 25 4294967087 -521 2371 94 7 0 chr4 40600452 40601115 -143687547 + AluSq SINE Alu 1 665 0 210 71 0 0 chr4 40601115 40601143 -143687519 + (GGAA)n Simple_repeat Simple_repeat 3 30 0 2160 83 41 10 chr4 40601154 40601444 -143687218 + AluSp SINE Alu 1 299 -14 2294 86 10 7 chr4 40601458 40601760 -143686902 + AluSq SINE Alu 7 309 -4 1213 116 29 0 chr4 40601760 40601932 -143686730 + AluSp SINE Alu 137 313 0 227 30 0 30 chr4 40601936 40601969 -143686693 + (GAAA)n Simple_repeat Simple_repeat 3 34 0 730 188 106 43 chr4 40602289 40602497 -143686165 - MIR SINE MIR -11 251 31 1773 106 89 32 chr4 40602508 40602790 -143685872 - AluSq SINE Alu -15 298 1 2280 91 7 3 chr4 40602948 40603255 -143685407 - AluY SINE Alu -3 308 1 1878 123 62 67 chr4 40603314 40603473 -143685189 + THE1C LTR MaLR 1 159 -216 2088 134 0 0 chr4 40603473 40603780 -143684882 - AluSx SINE Alu -5 307 1 1878 123 62 67 chr4 40603780 40603994 -143684668 + THE1C LTR MaLR 159 372 -3 1804 112 89 0 chr4 40603995 40604276 -143684386 + AluSx SINE Alu 4 307 0 226 180 60 0 chr4 40604359 40604409 -143684253 + HAL1 LINE L1 2321 2373 -134 1323 157 5 9 chr4 40604641 40604857 -143683805 - AluJb SINE Alu -11 301 87 909 199 45 15 chr4 40604984 40605184 -143683478 - AluJo SINE Alu -3 309 104 1061 85 0 0 chr4 40605184 40605313 -143683349 + AluY SINE Alu 1 129 -182 1111 63 0 0 chr4 40605426 40605553 -143683109 - AluY SINE Alu -180 131 5 394 267 82 30 chr4 40605559 40605694 -143682968 - HAL1 LINE L1 -1130 1377 1236 2345 106 0 0 chr4 40605771 40606072 -143682590 - AluSg SINE Alu -8 302 2 922 269 157 73 chr4 40606158 40606577 -143682085 - L2 LINE L2 0 3313 2931 1377 193 38 51 chr4 40606577 40606893 -143681769 + AluJo SINE Alu 1 312 0 922 269 157 73 chr4 40606893 40607075 -143681587 - L2 LINE L2 -382 2931 2766 1938 109 41 31 chr4 40607075 40607368 -143681294 + AluSx SINE Alu 1 296 -16 922 269 157 73 chr4 40607368 40607660 -143681002 - L2 LINE L2 -547 2766 2357 2325 85 6 19 chr4 40607677 40607994 -143680668 - AluSp SINE Alu 0 313 1 1810 107 11 4 chr4 40607997 40608260 -143680402 - AluSx SINE Alu -4 308 44 * 1887 135 0 0 chr4 40608259 40608526 -143680136 - AluJb SINE Alu -2 310 44 1477 169 56 53 chr4 40608720 40608857 -143679805 - AluJo SINE Alu -17 285 150 198 0 0 0 chr4 40608857 40608879 -143679783 + (TA)n Simple_repeat Simple_repeat 1 22 0 1477 169 56 53 chr4 40608879 40609025 -143679637 - AluJo SINE Alu -152 150 1 201 138 0 0 chr4 40609034 40609063 -143679599 - MIR SINE MIR -116 146 118 2450 63 3 0 chr4 40609221 40609520 -143679142 + AluY SINE Alu 1 300 -11 2221 99 17 3 chr4 40610232 40610534 -143678128 - AluSp SINE Alu -7 306 1 1740 99 91 60 chr4 40610883 40610925 -143677737 - THE1C LTR MaLR 0 375 336 1877 66 160 0 chr4 40610925 40611206 -143677456 + AluSq SINE Alu 2 321 0 1740 99 91 60 chr4 40611206 40611526 -143677136 - THE1C LTR MaLR -39 336 1 1039 173 41 10 chr4 40611764 40611961 -143676701 - AluJb SINE Alu -18 294 92 442 143 0 0 chr4 40612278 40612341 -143676321 - Alu SINE Alu -14 298 236 2181 101 0 3 chr4 40612370 40612657 -143676005 - AluSx SINE Alu -26 286 1 2208 94 7 7 chr4 40612662 40612950 -143675712 - AluSp SINE Alu -25 288 1 1699 171 10 14 chr4 40612952 40613244 -143675418 - AluSx SINE Alu -21 291 1 665 200 157 29 chr4 40613431 40613571 -143675091 + AluJb SINE Alu 134 291 -21 23 0 0 0 chr4 40613920 40613943 -143674719 + AT_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr4 40615524 40615563 -143673099 + AT_rich Low_complexity Low_complexity 1 39 0 1476 153 19 88 chr4 40616537 40616857 -143671805 - AluJo SINE Alu -13 299 2 2153 93 0 4 chr4 40617426 40617749 -143670913 - AluSc SINE Alu 0 322 1 2056 121 10 0 chr4 40617971 40618261 -143670401 - AluSg SINE Alu -17 293 1 199 267 105 12 chr4 40619515 40619601 -143669061 + MIR SINE MIR 157 250 -12 2074 138 7 0 chr4 40620333 40620629 -143668033 + AluSg SINE Alu 1 298 -12 2388 87 0 6 chr4 40620634 40620946 -143667716 + AluY SINE Alu 1 310 -1 949 186 0 23 chr4 40621181 40621353 -143667309 - AluJo SINE Alu -46 266 99 2147 118 3 10 chr4 40621377 40621682 -143666980 - AluSx SINE Alu -9 303 1 1195 165 46 42 chr4 40621859 40622096 -143666566 + AluJo SINE Alu 51 288 -24 1804 118 20 106 chr4 40622105 40622453 -143666209 + AluYb8 SINE Alu 1 318 0 3331 115 43 36 chr4 40622454 40622631 -143666031 + HSMAR2 DNA Mariner 154 328 -974 1552 204 7 31 chr4 40622631 40622920 -143665742 - AluJb SINE Alu -19 283 2 3331 115 43 36 chr4 40622920 40623299 -143665363 + HSMAR2 DNA Mariner 328 714 -588 703 165 241 0 chr4 40623299 40623432 -143665230 + AluJb SINE Alu 134 298 -14 3835 103 31 18 chr4 40623432 40624005 -143664657 + HSMAR2 DNA Mariner 715 1295 -7 486 182 20 0 chr4 40624013 40624112 -143664550 - L1MB3 LINE L1 -85 6098 5998 413 191 138 21 chr4 40624115 40624209 -143664453 - AluJb SINE Alu -91 221 117 1633 131 120 22 chr4 40624209 40624476 -143664186 - AluSx SINE Alu -19 293 1 2220 115 0 0 chr4 40624749 40625054 -143663608 - AluSx SINE Alu -7 305 1 379 248 134 40 chr4 40625287 40625436 -143663226 - MIR SINE MIR 0 262 100 1926 101 0 89 chr4 40625668 40625995 -143662667 - AluSx SINE Alu -14 298 1 2123 97 0 72 chr4 40626042 40626363 -143662299 - AluSx SINE Alu -14 298 1 236 298 274 0 chr4 40627580 40627664 -143660998 + L2 LINE L2 3157 3263 -9 1828 164 0 3 chr4 40627671 40627958 -143660704 + AluJb SINE Alu 1 286 -26 1540 91 5 0 chr4 40627969 40628167 -143660495 + AluSp SINE Alu 1 199 -114 420 197 0 0 chr4 40628167 40628233 -143660429 + AluSp SINE Alu 231 296 -17 2142 106 3 0 chr4 40628521 40628805 -143659857 + AluSg SINE Alu 1 285 -25 307 273 38 83 chr4 40629014 40629069 -143659593 - MIR SINE MIR -78 184 128 2141 67 16 0 chr4 40629069 40629362 -143659300 + AluSg SINE Alu 25 321 0 307 273 38 83 chr4 40629362 40629437 -143659225 - MIR SINE MIR -134 128 59 180 0 0 0 chr4 40629536 40629556 -143659106 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 573 84 0 0 chr4 40629597 40629668 -143658994 + AluS SINE Alu 14 84 -228 1882 124 0 0 chr4 40629668 40629927 -143658735 - AluSx SINE Alu -53 259 1 299 134 239 30 chr4 40629927 40629994 -143658668 - AluSc SINE Alu -119 180 100 1879 138 4 7 chr4 40630010 40630286 -143658376 - AluSx SINE Alu -37 275 1 2210 102 3 0 chr4 40630383 40630668 -143657994 - AluSg SINE Alu -24 286 1 1225 138 5 0 chr4 40630745 40630933 -143657729 - AluSg/x SINE Alu -13 297 109 735 179 6 42 chr4 40631833 40632001 -143656661 + L1MA5 LINE L1 6127 6288 -12 261 0 0 0 chr4 40632141 40632170 -143656492 + (TA)n Simple_repeat Simple_repeat 1 29 0 632 179 104 60 chr4 40632175 40632309 -143656353 - FRAM SINE Alu -30 146 7 901 199 16 126 chr4 40632321 40632567 -143656095 - AluJo SINE Alu -92 220 2 1392 164 109 8 chr4 40632683 40632939 -143655723 + AluSg SINE Alu 1 282 -28 2056 121 10 0 chr4 40633216 40633506 -143655156 + AluSg SINE Alu 1 293 -17 2417 87 0 10 chr4 40633728 40634037 -143654625 + AluSq SINE Alu 1 306 -7 1564 184 42 3 chr4 40634467 40634750 -143653912 + AluSx SINE Alu 1 294 -18 198 103 0 0 chr4 40635418 40635447 -143653215 + (A)n Simple_repeat Simple_repeat 1 29 0 1897 127 10 20 chr4 40635745 40636037 -143652625 + AluSq SINE Alu 1 289 -24 31 68 0 0 chr4 40636274 40636333 -143652329 + AT_rich Low_complexity Low_complexity 1 59 0 1549 143 68 11 chr4 40636859 40637138 -143651524 + AluJb SINE Alu 1 295 -17 2172 145 0 62 chr4 40637349 40637707 -143650955 + MER1B DNA MER1_type 2 337 0 1368 175 91 29 chr4 40639441 40639523 -143649139 + AluJo SINE Alu 1 76 -236 2403 80 3 3 chr4 40639523 40639824 -143648838 + AluY SINE Alu 1 301 -10 1368 175 91 29 chr4 40639824 40640015 -143648647 + AluJo SINE Alu 76 291 -21 406 269 139 58 chr4 40640704 40640825 -143647837 - MIR SINE MIR -5 257 147 1456 200 44 0 chr4 40640825 40641120 -143647542 - AluJo SINE Alu -4 308 1 406 269 139 58 chr4 40641120 40641221 -143647441 - MIR SINE MIR -115 147 17 452 345 148 25 chr4 40641926 40642485 -143646177 + L2 LINE L2 189 816 -2498 872 181 9 126 chr4 40642520 40642735 -143645927 - AluJo SINE Alu -84 228 39 26 0 0 0 chr4 40642895 40642921 -143645741 + AT_rich Low_complexity Low_complexity 1 26 0 220 311 189 38 chr4 40643213 40643425 -143645237 + L2 LINE L2 1676 1919 -1395 262 226 226 92 chr4 40643490 40643557 -143645105 + MIR SINE MIR 71 128 -134 2180 122 0 3 chr4 40643557 40643861 -143644801 + AluSx SINE Alu 7 309 -3 262 226 226 92 chr4 40643861 40643957 -143644705 + MIR SINE MIR 128 256 -6 225 447 24 0 chr4 40644224 40644347 -143644315 + L2 LINE L2 3143 3268 -4 4032 244 85 34 chr4 40644743 40646063 -143642599 + L1M4 LINE L1 836 2087 -4557 2339 85 0 0 chr4 40646063 40646376 -143642286 + AluSx SINE Alu 1 313 0 4032 244 85 34 chr4 40646376 40646600 -143642062 + L1M4 LINE L1 2087 2298 -4346 2592 68 0 0 chr4 40646600 40646907 -143641755 + AluY SINE Alu 1 307 -4 4032 244 85 34 chr4 40646907 40647351 -143641311 + L1M4 LINE L1 2298 3053 -3591 870 116 7 54 chr4 40647352 40647499 -143641163 - FLAM_C SINE Alu -3 140 1 2527 221 111 42 chr4 40647499 40647578 -143641084 + L1M4 LINE L1 4899 4971 -1673 212 75 0 25 chr4 40647578 40647618 -143641044 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2527 221 111 42 chr4 40647618 40648157 -143640505 + L1M4 LINE L1 4971 5600 -1044 1800 112 0 4 chr4 40648157 40648399 -143640263 - AluSq SINE Alu -17 296 56 2527 221 111 42 chr4 40648399 40648670 -143639992 + L1M4 LINE L1 5600 5851 -793 260 178 41 14 chr4 40648667 40648740 -143639922 + L1MB3 LINE L1 6109 6183 0 * 806 194 22 0 chr4 40648832 40648971 -143639691 - FRAM SINE Alu -31 145 4 255 318 94 56 chr4 40649152 40649385 -143639277 + L1M3b LINE L1 176 417 -5864 272 125 0 0 chr4 40649441 40649481 -143639181 + L1MA4 LINE L1 5554 5593 -575 906 159 0 0 chr4 40649481 40649619 -143639043 + FLAM_C SINE Alu 1 138 -5 2914 144 5 84 chr4 40649619 40649711 -143638951 + L1MA4 LINE L1 5585 5683 -620 1848 169 0 6 chr4 40649711 40650024 -143638638 + AluSx SINE Alu 1 311 -1 2914 144 5 84 chr4 40650024 40650317 -143638345 + L1MA4 LINE L1 5683 5998 -305 1901 148 20 7 chr4 40650317 40650621 -143638041 + AluJo SINE Alu 1 308 -4 2914 144 5 84 chr4 40650621 40650709 -143637953 + L1MA4 LINE L1 5998 6007 -296 1903 127 21 17 chr4 40650709 40651000 -143637662 + AluSg SINE Alu 2 293 -17 2914 144 5 84 chr4 40651000 40651118 -143637544 + L1MA4 LINE L1 6007 6133 -170 542 194 9 9 chr4 40651117 40651225 -143637437 - FRAM SINE Alu -6 170 63 * 624 164 0 0 chr4 40651225 40651329 -143637333 + L1MA4 LINE L1 6185 6288 -12 28 29 0 0 chr4 40651656 40651691 -143636971 + AT_rich Low_complexity Low_complexity 1 35 0 2288 114 0 3 chr4 40653371 40653677 -143634985 + AluSc SINE Alu 1 305 -4 274 232 49 24 chr4 40654244 40654326 -143634336 - MIR SINE MIR -2 260 177 345 311 142 16 chr4 40654429 40654738 -143633924 - L1ME LINE L1 -388 5733 5386 640 154 106 0 chr4 40654935 40655039 -143633623 + FLAM_A SINE Alu 4 118 -15 23 0 0 0 chr4 40655043 40655066 -143633596 + AT_rich Low_complexity Low_complexity 1 23 0 1462 153 110 4 chr4 40655088 40655324 -143633338 - AluSx SINE Alu -51 261 1 2279 103 0 13 chr4 40655628 40655940 -143632722 - AluSg SINE Alu -2 308 1 254 309 106 0 chr4 40656011 40656105 -143632557 + L2 LINE L2 3202 3305 -8 469 250 48 24 chr4 40656663 40656831 -143631831 - MIR SINE MIR 0 262 91 1836 123 0 85 chr4 40656934 40657252 -143631410 + AluSx SINE Alu 1 291 -21 270 0 0 0 chr4 40657257 40657287 -143631375 + (CA)n Simple_repeat Simple_repeat 2 31 0 1489 126 11 101 chr4 40657703 40657855 -143630807 - AluJo SINE Alu -43 269 152 1985 147 0 0 chr4 40657855 40658140 -143630522 - AluSx SINE Alu -27 285 1 1489 126 11 101 chr4 40658140 40658265 -143630397 - AluJo SINE Alu -160 152 17 713 198 0 0 chr4 40658701 40658817 -143629845 + FLAM_C SINE Alu 2 117 -16 1285 178 57 70 chr4 40659104 40659337 -143629325 + L1MB4 LINE L1 4697 4931 -1215 1956 155 0 7 chr4 40659337 40659647 -143629015 + AluSx SINE Alu 1 308 -4 1285 178 57 70 chr4 40659647 40659901 -143628761 + L1MB4 LINE L1 4931 5332 -814 1207 166 0 10 chr4 40659901 40660127 -143628535 + AluJb SINE Alu 86 309 0 1645 176 117 28 chr4 40660135 40660812 -143627850 + L1MB4 LINE L1 5323 6180 0 2314 97 7 7 chr4 40661203 40661513 -143627149 - AluSq SINE Alu -3 310 1 1257 112 6 0 chr4 40661680 40661850 -143626812 - AluSq SINE Alu -10 303 133 1886 115 49 7 chr4 40661889 40662176 -143626486 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr4 40662346 40662368 -143626294 + AT_rich Low_complexity Low_complexity 1 22 0 1759 200 3 3 chr4 40663269 40663574 -143625088 + AluJo SINE Alu 1 305 -7 277 346 0 0 chr4 40663613 40663694 -143624968 - L2 LINE L2 -49 3264 3184 614 312 55 9 chr4 40664424 40664642 -143624020 - MIR SINE MIR -27 235 8 248 162 44 0 chr4 40664850 40664918 -143623744 + L1ME4a LINE L1 6050 6120 -1 185 149 128 43 chr4 40665735 40665782 -143622880 + L2 LINE L2 3175 3225 -88 276 214 18 0 chr4 40666769 40666825 -143621837 + MLT1J LTR MaLR 86 142 -369 1442 158 139 8 chr4 40667146 40667412 -143621250 - AluJo SINE Alu -11 301 1 2395 79 0 7 chr4 40667831 40668134 -143620528 + AluY SINE Alu 1 301 -10 2155 108 7 0 chr4 40668263 40668559 -143620103 - AluSc SINE Alu -11 298 1 29 47 0 0 chr4 40669043 40669086 -143619576 + AT_rich Low_complexity Low_complexity 1 43 0 3821 132 38 29 chr4 40670193 40670926 -143617736 - L1MA5A LINE L1 -10 6287 5548 827 189 82 25 chr4 40671065 40671308 -143617354 - L1MB8 LINE L1 -16 6162 5906 1791 152 38 3 chr4 40671311 40671626 -143617036 + THE1B LTR MaLR 3 328 -36 277 136 0 0 chr4 40671615 40671683 -143616979 + Alu SINE Alu 250 317 0 * 505 193 181 0 chr4 40671696 40671890 -143616772 - L1MA5A LINE L1 -742 5424 5205 265 340 31 10 chr4 40672113 40672210 -143616452 - L2 LINE L2 -6 3266 3168 30 0 0 0 chr4 40672315 40672345 -143616317 + AT_rich Low_complexity Low_complexity 1 30 0 2205 96 4 0 chr4 40672718 40672998 -143615664 - AluSx SINE Alu -31 281 1 1628 197 20 0 chr4 40673148 40673447 -143615215 - AluJb SINE Alu -7 305 1 2167 105 21 0 chr4 40673458 40673744 -143614918 - AluSg SINE Alu -18 292 1 1740 142 64 10 chr4 40674497 40674793 -143613869 + AluSx SINE Alu 1 312 0 204 125 0 0 chr4 40674804 40674836 -143613826 + (GAGAA)n Simple_repeat Simple_repeat 4 35 0 1410 183 58 17 chr4 40674841 40675136 -143613526 + AluJb SINE Alu 6 312 0 1694 143 0 117 chr4 40675150 40675492 -143613170 + AluJb SINE Alu 1 302 0 5350 180 31 24 chr4 40675501 40675949 -143612713 - L1MA5A LINE L1 -1158 4988 4544 2201 108 3 0 chr4 40675949 40676244 -143612418 + AluSp SINE Alu 1 296 -17 5350 180 31 24 chr4 40676244 40677069 -143611593 - L1MA5A LINE L1 -1602 4544 3707 1125 214 57 9 chr4 40677067 40677403 -143611259 + L1MA4 LINE L1 4955 5306 -840 * 233 143 54 0 chr4 40677403 40677459 -143611203 + A-rich Low_complexity Low_complexity 5 63 0 2203 88 24 0 chr4 40677482 40677778 -143610884 + AluSc SINE Alu 1 303 -6 3285 164 95 13 chr4 40677785 40678534 -143610128 + L1MA4 LINE L1 5471 6280 -20 1574 204 39 34 chr4 40678534 40678922 -143609740 + MLT1B LTR MaLR 1 390 0 2171 87 11 3 chr4 40680139 40680425 -143608237 - AluSx SINE Alu -18 294 7 1723 163 0 42 chr4 40680645 40680952 -143607710 + AluJo SINE Alu 13 306 -6 2360 86 0 22 chr4 40680955 40681270 -143607392 + AluY SINE Alu 1 308 -3 2121 143 82 86 chr4 40681276 40681750 -143606912 + Tigger3(Golem) DNA MER2_type 2507 2980 -49 2169 57 96 0 chr4 40681750 40682032 -143606630 - AluY SINE Alu -2 309 1 2121 143 82 86 chr4 40682032 40682081 -143606581 + Tigger3(Golem) DNA MER2_type 2980 3028 -1 2079 148 0 3 chr4 40682552 40682849 -143605813 - AluJb SINE Alu -12 300 5 236 146 0 0 chr4 40683001 40683042 -143605620 + Alu SINE Alu 1 41 -261 216 209 209 22 chr4 40683155 40683246 -143605416 + MIR SINE MIR 59 166 -96 249 268 189 55 chr4 40683889 40684016 -143604646 + MIR SINE MIR 47 190 -72 287 247 0 62 chr4 40684451 40684532 -143604130 - L2 LINE L2 -220 3052 2977 642 115 10 10 chr4 40684724 40684820 -143603842 - AluS SINE Alu -217 96 1 1487 174 71 20 chr4 40684857 40685151 -143603511 - AluSx SINE Alu -3 309 1 2091 72 11 0 chr4 40685317 40685582 -143603080 - AluSp SINE Alu -16 297 30 584 213 55 6 chr4 40686043 40686226 -143602436 + L1M4 LINE L1 2896 3087 -3059 571 125 0 0 chr4 40686272 40686352 -143602310 + AluJ/FLAM SINE Alu 1 80 -232 1053 153 10 49 chr4 40686354 40686557 -143602105 - AluJb SINE Alu -31 281 87 1727 261 65 4 chr4 40686570 40687064 -143601598 - MLT1F LTR MaLR -8 534 11 2123 139 0 3 chr4 40687138 40687440 -143601222 - AluSx SINE Alu -11 301 1 2002 92 50 7 chr4 40687811 40688094 -143600568 + AluSg SINE Alu 2 296 -14 2045 136 0 0 chr4 40688133 40688420 -143600242 + AluSq SINE Alu 1 287 -26 889 200 7 0 chr4 40688545 40688700 -143599962 + FRAM SINE Alu 9 164 -12 237 65 0 0 chr4 40689849 40689880 -143598782 + (T)n Simple_repeat Simple_repeat 1 31 0 1469 191 144 62 chr4 40690054 40690370 -143598292 - L1M4 LINE L1 -748 5398 5109 231 36 0 0 chr4 40690370 40690398 -143598264 + (ATTG)n Simple_repeat Simple_repeat 1 28 0 1644 114 138 0 chr4 40690399 40690645 -143598017 - AluSx SINE Alu -32 280 1 1469 191 144 62 chr4 40690645 40690966 -143597696 - L1M4 LINE L1 -1036 5110 4707 909 232 65 4 chr4 40691012 40691288 -143597374 + L1ME LINE L1 5526 5818 -348 280 245 71 31 chr4 40691328 40691426 -143597236 + L1MA10 LINE L1 6170 6271 -63 778 210 109 16 chr4 40691437 40691694 -143596968 - MER21B LTR ERV1 -109 754 474 1697 132 43 29 chr4 40691701 40691982 -143596680 - AluSx SINE Alu -27 285 1 325 237 13 13 chr4 40692027 40692103 -143596559 + 5S rRNA rRNA 44 119 -2 744 213 209 4 chr4 40692346 40692576 -143596086 - MER21B LTR ERV1 -566 297 21 1587 182 40 24 chr4 40692658 40692954 -143595708 - AluJb SINE Alu -11 301 1 269 256 111 17 chr4 40692980 40693097 -143595565 + L1ME LINE L1 5514 5641 -521 2065 163 19 11 chr4 40693144 40693519 -143595143 + MER57A LTR ERV1 8 385 -18 2289 80 3 0 chr4 40693520 40693807 -143594855 + AluSx SINE Alu 1 288 -24 2265 100 0 0 chr4 40693937 40694226 -143594436 + AluSc SINE Alu 1 289 -20 540 214 43 8 chr4 40694316 40694433 -143594229 + AluJo SINE Alu 121 241 -71 1712 164 10 27 chr4 40694439 40694738 -143593924 + AluJo SINE Alu 10 303 -9 2019 143 3 10 chr4 40694761 40695075 -143593587 + AluSx SINE Alu 1 312 0 314 211 56 0 chr4 40695130 40695201 -143593461 + AluJo SINE Alu 226 300 -2 1437 164 148 0 chr4 40695224 40695487 -143593175 + AluSx SINE Alu 1 302 0 195 315 37 65 chr4 40695886 40695909 -143592753 - MIR SINE MIR -73 135 113 1531 151 49 66 chr4 40695909 40696213 -143592449 - AluJb SINE Alu -13 299 1 195 315 37 65 chr4 40696213 40696297 -143592365 - MIR SINE MIR -95 113 31 282 242 154 77 chr4 40696343 40696525 -143592137 + L2 LINE L2 3117 3312 -1 685 211 6 42 chr4 40697021 40697187 -143591475 + FRAM SINE Alu 3 162 -4 1290 215 96 0 chr4 40697703 40697964 -143590698 - AluJo SINE Alu -21 291 6 375 197 0 0 chr4 40698096 40698167 -143590495 + FRAM SINE Alu 25 95 -71 498 75 0 0 chr4 40698367 40698434 -143590228 + (CA)n Simple_repeat Simple_repeat 2 68 0 2015 112 9 67 chr4 40698747 40699078 -143589584 + AluSx SINE Alu 1 312 0 2369 79 0 7 chr4 40699140 40699443 -143589219 + AluY SINE Alu 1 301 -10 2270 98 3 3 chr4 40699655 40699962 -143588700 + AluSp SINE Alu 1 307 -6 2529 50 7 3 chr4 40700564 40700867 -143587795 + AluY SINE Alu 1 304 -7 2176 123 0 16 chr4 40701305 40701622 -143587040 + AluSx SINE Alu 1 312 0 428 185 74 62 chr4 40701878 40702019 -143586643 + L1 LINE L1 3190 3335 -2811 2001 141 10 7 chr4 40702019 40702323 -143586339 + AluSx SINE Alu 1 305 -7 428 185 74 62 chr4 40702323 40702343 -143586319 + L1 LINE L1 3335 3353 -2793 591 201 0 37 chr4 40702345 40702479 -143586183 + FLAM_C SINE Alu 1 129 -14 1740 162 30 3 chr4 40702558 40702860 -143585802 + AluSx SINE Alu 1 310 -2 1512 122 13 13 chr4 40702897 40703127 -143585535 + MER30 DNA MER1_type 1 230 0 796 173 89 0 chr4 40703151 40703330 -143585332 - MSTB2 LTR MaLR -262 195 1 1037 216 166 12 chr4 40703356 40703615 -143585047 + AluJo SINE Alu 2 300 -2 373 124 25 0 chr4 40703616 40703698 -143584964 + L1P1 LINE L1 5653 5741 -414 2268 88 0 26 chr4 40703698 40704004 -143584658 - AluSg1 SINE Alu -9 300 3 2139 135 0 0 chr4 40704005 40704308 -143584354 - AluSx SINE Alu -9 303 1 28 95 0 0 chr4 40704553 40704637 -143584025 + AT_rich Low_complexity Low_complexity 1 84 0 2426 73 13 0 chr4 40704858 40705158 -143583504 + AluSp SINE Alu 1 304 -9 248 301 84 38 chr4 40706035 40706274 -143582388 + MARNA DNA Mariner 307 556 -30 1231 187 0 0 chr4 40707252 40707461 -143581201 + AluJo SINE Alu 90 298 -14 2604 77 50 79 chr4 40707775 40708140 -143580522 + MLT2A1 LTR ERVL 1 375 -69 315 0 0 0 chr4 40708140 40708175 -143580487 + (TA)n Simple_repeat Simple_repeat 1 35 0 2604 77 50 79 chr4 40708175 40708225 -143580437 + MLT2A1 LTR ERVL 375 404 -40 180 0 0 0 chr4 40708225 40708245 -143580417 + (TG)n Simple_repeat Simple_repeat 2 21 0 2604 77 50 79 chr4 40708245 40708285 -143580377 + MLT2A1 LTR ERVL 404 444 0 931 220 0 0 chr4 40708355 40708528 -143580134 - AluJb SINE Alu -7 305 133 1348 200 4 8 chr4 40708651 40708901 -143579761 + AluJb SINE Alu 50 298 -14 413 136 0 45 chr4 40708902 40708990 -143579672 - Tigger3(Golem) DNA MER2_type -669 2360 2277 353 200 0 148 chr4 40708981 40709023 -143579639 - Tigger3(Golem) DNA MER2_type -2921 108 61 * 688 113 19 0 chr4 40709023 40709129 -143579533 - L1PA7 LINE L1 0 6154 6047 353 200 0 148 chr4 40709129 40709201 -143579461 - Tigger3(Golem) DNA MER2_type -2968 61 11 1617 137 4 4 chr4 40709234 40709468 -143579194 + AluSx SINE Alu 3 236 -76 958 195 61 17 chr4 40709469 40709517 -143579145 + AluJo SINE Alu 60 104 -208 2059 149 7 0 chr4 40709517 40709818 -143578844 - AluSx SINE Alu -9 303 1 958 195 61 17 chr4 40709818 40710000 -143578662 + AluJo SINE Alu 104 300 -12 373 284 78 0 chr4 40711518 40711659 -143577003 + MER58A DNA MER1_type 42 193 -31 1704 190 0 16 chr4 40711683 40711994 -143576668 + AluJb SINE Alu 1 306 -6 207 211 0 0 chr4 40713716 40713754 -143574908 + T-rich Low_complexity Low_complexity 1 38 0 1601 167 0 11 chr4 40713861 40714124 -143574538 - AluSx SINE Alu -52 260 1 582 310 84 10 chr4 40714896 40715099 -143573563 - MIR SINE MIR -21 241 24 22 88 0 0 chr4 40715220 40715277 -143573385 + AT_rich Low_complexity Low_complexity 1 57 0 2417 45 21 0 chr4 40715640 40715930 -143572732 - AluY SINE Alu -15 296 1 653 173 0 18 chr4 40715996 40716106 -143572556 - FLAM_A SINE Alu -14 128 21 500 155 0 0 chr4 40716315 40716399 -143572263 + AluJ/FLAM SINE Alu 1 84 -228 465 257 65 65 chr4 40716494 40716574 -143572088 + HAL1 LINE L1 759 838 -1669 2279 111 0 0 chr4 40716574 40716880 -143571782 + AluSx SINE Alu 1 306 -6 465 257 65 65 chr4 40716880 40717060 -143571602 + HAL1 LINE L1 837 1019 -1488 316 235 17 9 chr4 40717075 40717190 -143571472 + GA-rich Low_complexity Low_complexity 2 117 0 201 152 0 0 chr4 40717229 40717262 -143571400 + A-rich Low_complexity Low_complexity 2 34 0 284 233 44 0 chr4 40717298 40717388 -143571274 + HAL1 LINE L1 1163 1256 -1251 1997 123 0 27 chr4 40717388 40717681 -143570981 + AluJb SINE Alu 14 298 -14 649 244 0 0 chr4 40717933 40718056 -143570606 + FLAM_A SINE Alu 1 123 -10 201 158 0 0 chr4 40718214 40718252 -143570410 + A-rich Low_complexity Low_complexity 1 38 0 2680 42 0 0 chr4 40718872 40719181 -143569481 - AluY SINE Alu -1 310 2 1404 167 7 57 chr4 40720038 40720393 -143568269 + AluJb SINE Alu 1 340 0 1688 168 7 23 chr4 40720408 40720717 -143567945 - AluSx SINE Alu -4 308 5 296 230 92 35 chr4 40721235 40721322 -143567340 + AluJo SINE Alu 122 213 -89 805 178 0 0 chr4 40722011 40722146 -143566516 + AluJo SINE Alu 3 137 -175 1489 196 21 14 chr4 40722147 40722433 -143566229 + AluJo SINE Alu 4 291 -21 1156 121 0 6 chr4 40722543 40722708 -143565954 + AluSg/x SINE Alu 133 296 -14 2491 59 0 7 chr4 40722847 40723151 -143565511 + AluY SINE Alu 1 302 -9 1858 137 31 7 chr4 40724381 40724673 -143563989 - AluSx SINE Alu -13 299 1 2169 110 10 3 chr4 40725453 40725753 -143562909 - AluSg SINE Alu -8 302 1 1749 178 3 20 chr4 40726335 40726633 -143562029 - AluJo SINE Alu -19 293 1 1954 152 0 29 chr4 40726636 40726951 -143561711 - AluJb SINE Alu -6 306 1 1085 174 181 15 chr4 40727244 40727503 -143561159 + AluJo SINE Alu 1 302 0 308 204 0 0 chr4 40727505 40727559 -143561103 + AluJo/FRAM SINE Alu 178 231 -71 2134 132 7 0 chr4 40727875 40728179 -143560483 + AluSp SINE Alu 1 306 -7 22 0 0 0 chr4 40728296 40728318 -143560344 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr4 40728536 40728572 -143560090 + AT_rich Low_complexity Low_complexity 1 36 0 1397 154 0 21 chr4 40728956 40729189 -143559473 + AluJo SINE Alu 76 303 -9 1996 135 4 0 chr4 40729559 40729840 -143558822 + AluSx SINE Alu 1 282 -30 2324 83 0 0 chr4 40730351 40730640 -143558022 + AluY SINE Alu 1 289 -22 25 0 0 0 chr4 40730916 40730941 -143557721 + AT_rich Low_complexity Low_complexity 1 25 0 28 0 0 0 chr4 40731945 40731973 -143556689 + AT_rich Low_complexity Low_complexity 1 28 0 1160 227 0 4 chr4 40732108 40732333 -143556329 - MER58A DNA MER1_type 0 224 1 1703 160 0 56 chr4 40732441 40732747 -143555915 + AluJo SINE Alu 1 289 -23 21 36 0 0 chr4 40732871 40732899 -143555763 + AT_rich Low_complexity Low_complexity 1 28 0 207 261 0 0 chr4 40733741 40733787 -143554875 + GA-rich Low_complexity Low_complexity 2 47 0 2097 132 3 6 chr4 40734036 40734347 -143554315 + AluSx SINE Alu 1 310 -2 1047 146 87 11 chr4 40734443 40734628 -143554034 + AluJb SINE Alu 87 285 -27 312 27 0 0 chr4 40734628 40734665 -143553997 + (CA)n Simple_repeat Simple_repeat 2 38 0 395 193 26 79 chr4 40735239 40735353 -143553309 + MLT1H LTR MaLR 442 549 0 255 259 0 0 chr4 40735560 40735618 -143553044 + Charlie5 DNA MER1_type 2 59 -2553 473 127 36 27 chr4 40735627 40735737 -143552925 + Charlie5 DNA MER1_type 2430 2540 -72 2163 137 0 0 chr4 40735819 40736119 -143552543 + AluSx SINE Alu 1 300 -12 180 97 0 0 chr4 40736159 40736190 -143552472 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 283 300 20 60 chr4 40736252 40736352 -143552310 + MIR3 SINE MIR 90 185 -23 735 183 9 113 chr4 40736939 40737026 -143551636 - MER2 DNA MER2_type -138 207 112 2032 146 10 0 chr4 40737026 40737327 -143551335 + AluSx SINE Alu 1 304 -8 735 183 9 113 chr4 40737327 40737468 -143551194 - MER2 DNA MER2_type -233 112 3 1756 131 25 135 chr4 40737544 40737707 -143550955 - LTR24C LTR ERV1 0 635 456 1806 125 90 0 chr4 40737707 40737986 -143550676 - AluSx SINE Alu -8 304 1 2141 106 3 3 chr4 40737989 40738282 -143550380 - AluSx SINE Alu -19 293 1 783 181 0 15 chr4 40738284 40738417 -143550245 - AluJo/FLAM SINE Alu -171 131 1 1756 131 25 135 chr4 40738417 40738562 -143550100 - LTR24C LTR ERV1 -182 453 294 2519 65 0 10 chr4 40738562 40738872 -143549790 - AluY SINE Alu -4 307 1 1984 161 0 3 chr4 40738874 40739178 -143549484 - AluSx SINE Alu -9 303 1 1756 131 25 135 chr4 40739178 40739346 -143549316 - LTR24C LTR ERV1 -342 293 202 367 94 0 0 chr4 40739448 40739507 -143549155 + AluSq/x SINE Alu 75 124 -178 1990 131 0 20 chr4 40739512 40739810 -143548852 - AluSx SINE Alu -16 296 5 1539 188 37 24 chr4 40739818 40740116 -143548546 - AluJb SINE Alu -10 302 1 892 209 74 81 chr4 40740407 40740543 -143548119 + HsTC2 DNA Tc2 1234 1369 -529 2425 70 3 0 chr4 40740543 40740844 -143547818 + AluY SINE Alu 2 303 -8 892 209 74 81 chr4 40740844 40740973 -143547689 + HsTC2 DNA Tc2 1369 1497 -401 1893 134 3 13 chr4 40740973 40741271 -143547391 + AluSx SINE Alu 3 297 -15 892 209 74 81 chr4 40741271 40741434 -143547228 + HsTC2 DNA Tc2 1497 1836 -62 699 328 49 56 chr4 40741438 40741651 -143547011 + ERVL LTR ERVL 4559 4772 -992 2186 128 0 0 chr4 40741651 40741949 -143546713 - AluSq SINE Alu -10 303 6 699 328 49 56 chr4 40741949 40742309 -143546353 + ERVL LTR ERVL 4772 5128 -636 306 189 9 90 chr4 40742313 40742376 -143546286 - MER5C DNA MER1_type 0 324 272 1830 171 3 0 chr4 40742376 40742662 -143546000 + AluJb SINE Alu 3 289 -23 306 189 9 90 chr4 40742662 40742709 -143545953 - MER5C DNA MER1_type -52 272 223 247 222 63 16 chr4 40742745 40742808 -143545854 - MER5C DNA MER1_type -210 114 49 1787 140 0 67 chr4 40742986 40743301 -143545361 + AluJo SINE Alu 1 294 -18 1719 105 0 16 chr4 40743303 40743550 -143545112 - AluSx SINE Alu -69 243 1 201 39 0 0 chr4 40743600 40743626 -143545036 + (A)n Simple_repeat Simple_repeat 1 26 0 1518 169 17 30 chr4 40743686 40743982 -143544680 + AluJb SINE Alu 1 292 -20 318 132 91 141 chr4 40744194 40744248 -143544414 + L1MC1 LINE L1 6138 6193 -140 2043 130 10 7 chr4 40744248 40744555 -143544107 + AluSx SINE Alu 1 308 -4 318 132 91 141 chr4 40744555 40744621 -143544041 + L1MC1 LINE L1 6193 6252 -81 486 149 11 11 chr4 40744655 40744749 -143543913 + L1MC1 LINE L1 6240 6333 0 2034 128 3 22 chr4 40744762 40745074 -143543588 + AluSx SINE Alu 1 306 -6 2032 139 7 7 chr4 40745137 40745438 -143543224 + AluSx SINE Alu 1 301 -11 1325 157 0 24 chr4 40745763 40745809 -143542853 + AluSg/x SINE Alu 88 134 -176 2109 114 0 0 chr4 40745809 40746148 -143542514 + AluSx SINE Alu 2 340 0 1325 157 0 24 chr4 40746148 40746310 -143542352 + AluSg/x SINE Alu 134 292 -18 2360 109 0 0 chr4 40746393 40746706 -143541956 + AluSq SINE Alu 1 313 0 1829 158 0 20 chr4 40746789 40747081 -143541581 + AluJb SINE Alu 1 286 -26 32 26 0 0 chr4 40747081 40747120 -143541542 + AT_rich Low_complexity Low_complexity 1 39 0 440 329 13 26 chr4 40747176 40747328 -143541334 - L2 LINE L2 -219 3053 2904 197 304 57 108 chr4 40747376 40747534 -143541128 - L2 LINE L2 -643 2671 2522 1928 144 40 0 chr4 40747534 40747832 -143540830 + AluSx SINE Alu 1 310 -2 1334 175 52 4 chr4 40747849 40748154 -143540508 + AluJo SINE Alu 1 318 0 1273 99 0 0 chr4 40748155 40748317 -143540345 + AluSq SINE Alu 1 162 -151 2097 129 3 10 chr4 40748421 40748716 -143539946 + AluSx SINE Alu 1 293 -19 940 194 90 5 chr4 40748804 40749103 -143539559 + L1ME1 LINE L1 4976 5330 -816 1809 158 10 17 chr4 40749107 40749404 -143539258 + AluJo SINE Alu 1 295 -17 2235 131 3 0 chr4 40749406 40749712 -143538950 + AluSx SINE Alu 1 307 -5 283 247 24 0 chr4 40749818 40749903 -143538759 - L1MD2 LINE L1 -417 5942 5856 955 132 0 0 chr4 40750008 40750144 -143538518 + AluSq SINE Alu 146 281 -32 294 95 0 0 chr4 40750144 40750186 -143538476 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 1598 109 126 18 chr4 40750186 40750471 -143538191 + LTR9 LTR ERV1 79 394 -218 558 119 0 0 chr4 40750471 40750555 -143538107 + MER30 DNA MER1_type 114 197 -33 698 197 0 0 chr4 40750787 40750904 -143537758 + AluJb SINE Alu 3 119 -193 259 146 0 0 chr4 40750919 40750960 -143537702 - L1MEd LINE L1 -5987 132 92 2009 152 7 3 chr4 40750963 40751266 -143537396 + AluSx SINE Alu 1 304 -8 1166 153 0 97 chr4 40751386 40751448 -143537214 + AluJb SINE Alu 86 152 -160 2372 95 0 0 chr4 40751448 40751753 -143536909 + AluSq SINE Alu 1 305 -8 1608 60 120 0 chr4 40751759 40751975 -143536687 + AluSc SINE Alu 54 295 -14 1166 153 0 97 chr4 40751975 40752133 -143536529 + AluJb SINE Alu 157 291 -21 930 170 64 9 chr4 40752836 40753047 -143535615 + L1ME1 LINE L1 5661 5873 -293 1693 112 22 11 chr4 40753047 40753324 -143535338 - AluSx SINE Alu -10 302 23 472 218 200 24 chr4 40753455 40753620 -143535042 - L2 LINE L2 0 3313 3120 526 111 0 0 chr4 40753643 40753715 -143534947 - AluS SINE Alu -14 297 226 887 96 0 0 chr4 40753717 40753832 -143534830 - AluSg SINE Alu -195 115 1 340 246 51 58 chr4 40754315 40754453 -143534209 + MIR3 SINE MIR 66 202 -6 1495 166 95 11 chr4 40754472 40754755 -143533907 - AluJb SINE Alu -5 307 1 2139 91 13 7 chr4 40754828 40755137 -143533525 - AluY SINE Alu 0 311 1 1811 138 10 10 chr4 40755150 40755439 -143533223 - AluSx SINE Alu -21 291 3 2291 76 0 0 chr4 40755921 40756237 -143532425 + AluSg SINE Alu 1 310 0 596 146 87 0 chr4 40756239 40756342 -143532320 - AluJo/FLAM SINE Alu -196 116 5 23 33 0 0 chr4 40756381 40756411 -143532251 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr4 40756696 40756719 -143531943 + AT_rich Low_complexity Low_complexity 1 23 0 2272 48 17 7 chr4 40757525 40757818 -143530844 + AluY SINE Alu 1 296 -15 1287 99 16 0 chr4 40758218 40758409 -143530253 - AluSp SINE Alu -5 308 115 488 227 27 8 chr4 40758509 40758693 -143529969 + L1PA15 LINE L1 5958 6143 -22 2242 78 0 3 chr4 40758693 40759013 -143529649 - AluY SINE Alu 0 319 1 488 227 27 8 chr4 40759013 40759037 -143529625 + L1PA15 LINE L1 6143 6165 0 2173 114 0 0 chr4 40759263 40759571 -143529091 - AluSg SINE Alu -2 308 1 1442 231 96 19 chr4 40759595 40760002 -143528660 - MLT1C LTR MaLR 0 467 24 474 18 0 0 chr4 40760002 40760057 -143528605 + (TG)n Simple_repeat Simple_repeat 2 56 0 1442 231 96 19 chr4 40760057 40760078 -143528584 - MLT1C LTR MaLR -443 24 6 1686 124 0 19 chr4 40760221 40760387 -143528275 - AluSg SINE Alu -13 297 136 2238 86 3 3 chr4 40760387 40760689 -143527973 - AluY SINE Alu -8 303 2 1686 124 0 19 chr4 40760689 40760787 -143527875 - AluSg SINE Alu -174 136 38 342 187 133 0 chr4 40760790 40760865 -143527797 + AluSg/x SINE Alu 86 170 -132 806 135 24 0 chr4 40760978 40761104 -143527558 + AluSc SINE Alu 119 247 -62 208 323 55 55 chr4 40761353 40761480 -143527182 + L2 LINE L2 2509 2635 -679 448 183 34 33 chr4 40761480 40761597 -143527065 - MER20 DNA MER1_type -137 82 1 207 0 0 0 chr4 40763419 40763442 -143525220 + (CCG)n Simple_repeat Simple_repeat 2 24 0 276 286 12 24 chr4 40764287 40764371 -143524291 + MER5A DNA MER1_type 2 84 -105 237 188 0 50 chr4 40764408 40764488 -143524174 + A-rich Low_complexity Low_complexity 1 76 0 207 227 0 0 chr4 40764489 40764533 -143524129 + MER5B DNA MER1_type 89 132 -46 2366 53 0 23 chr4 40765156 40765460 -143523202 - AluY SINE Alu -14 297 1 1681 112 0 23 chr4 40765623 40765882 -143522780 - AluSq SINE Alu -60 253 1 3249 119 57 16 chr4 40765902 40766408 -143522254 - MER1A DNA MER1_type 0 527 1 836 170 0 21 chr4 40766548 40766689 -143521973 - AluJo SINE Alu -173 139 2 2306 91 0 7 chr4 40767323 40767632 -143521030 - AluSx SINE Alu -5 307 1 2056 96 7 3 chr4 40767655 40767948 -143520714 - AluSq SINE Alu -19 294 1 1875 139 0 29 chr4 40767948 40768263 -143520399 - AluSx SINE Alu -3 309 3 2278 90 0 13 chr4 40768296 40768470 -143520192 - AluSq SINE Alu -6 307 137 2323 58 37 0 chr4 40768470 40768765 -143519897 - AluY SINE Alu -4 307 2 2278 90 0 13 chr4 40768765 40768901 -143519761 - AluSq SINE Alu -176 137 1 276 289 230 37 chr4 40768955 40769090 -143519572 + MIR SINE MIR 10 170 -92 2054 88 7 7 chr4 40769091 40769405 -143519257 - AluSq SINE Alu 0 314 1 1903 147 0 0 chr4 40769407 40769700 -143518962 - AluJb SINE Alu -19 293 1 1792 79 0 4 chr4 40769929 40770169 -143518493 - AluY SINE Alu 0 311 73 1018 212 0 14 chr4 40770270 40770492 -143518170 - AluJb SINE Alu -85 227 9 771 200 18 36 chr4 40770506 40770671 -143517991 - AluJb SINE Alu -17 295 134 1067 125 12 0 chr4 40770716 40770876 -143517786 + AluSg/x SINE Alu 137 298 -14 231 182 0 0 chr4 40771359 40771392 -143517270 + Alu SINE Alu 1 33 -269 293 230 14 27 chr4 40771392 40771466 -143517196 + MIR SINE MIR 188 260 -2 2058 133 0 3 chr4 40771466 40771775 -143516887 - AluSg SINE Alu -2 308 1 24 32 0 0 chr4 40771874 40771905 -143516757 + AT_rich Low_complexity Low_complexity 1 31 0 1945 151 0 0 chr4 40772055 40772354 -143516308 - AluSq SINE Alu -14 299 1 2018 95 0 7 chr4 40772435 40772745 -143515917 - AluSg SINE Alu 0 308 1 764 146 57 0 chr4 40772748 40772871 -143515791 - AluSq/x SINE Alu -181 131 2 2176 87 7 0 chr4 40773357 40773645 -143515017 - AluSq SINE Alu -13 300 11 1579 117 4 16 chr4 40773807 40773877 -143514785 + AluSg/x SINE Alu 65 134 -176 1932 131 0 13 chr4 40773877 40774189 -143514473 + AluSg SINE Alu 1 308 -2 1579 117 4 16 chr4 40774189 40774367 -143514295 + AluSg/x SINE Alu 134 310 0 1221 151 131 19 chr4 40774619 40774764 -143513898 - AluJo SINE Alu -16 296 169 2081 103 7 3 chr4 40774764 40775056 -143513606 - AluSc SINE Alu -16 293 1 1221 151 131 19 chr4 40775056 40775169 -143513493 - AluJo SINE Alu -143 169 9 226 125 0 25 chr4 40775234 40775274 -143513388 - U3 snRNA snRNA -178 39 1 526 136 0 0 chr4 40775357 40775445 -143513217 - AluS SINE Alu -2 310 223 1533 145 60 18 chr4 40775568 40775686 -143512976 + AluSg SINE Alu 1 113 -197 2412 63 0 0 chr4 40775686 40775989 -143512673 + AluY SINE Alu 1 303 -8 1533 145 60 18 chr4 40775989 40776152 -143512510 + AluSg SINE Alu 113 294 -16 23 0 0 0 chr4 40776154 40776177 -143512485 + AT_rich Low_complexity Low_complexity 1 23 0 1598 113 9 0 chr4 40777564 40777820 -143510842 - AluSx SINE Alu 0 315 58 365 260 0 48 chr4 40778036 40778140 -143510522 + MER5A DNA MER1_type 21 119 -70 1683 154 31 0 chr4 40778163 40778449 -143510213 - AluSx SINE Alu -12 300 6 310 294 138 46 chr4 40778491 40778703 -143509959 + MIR SINE MIR 32 259 -3 338 240 110 10 chr4 40778775 40778875 -143509787 - LTR33 LTR ERVL -8 513 404 2294 57 0 10 chr4 40778890 40779187 -143509475 + AluY SINE Alu 1 294 -17 1256 112 0 21 chr4 40779492 40779680 -143508982 + AluJb SINE Alu 1 184 -128 23 0 0 0 chr4 40779702 40779725 -143508937 + AT_rich Low_complexity Low_complexity 1 23 0 226 236 46 75 chr4 40779730 40779904 -143508758 + L1ME4a LINE L1 5931 6099 -22 596 311 32 44 chr4 40779913 40779968 -143508694 - MIR SINE MIR -15 247 193 1718 135 0 83 chr4 40779968 40780157 -143508505 - AluSx SINE Alu -14 298 146 1902 117 0 58 chr4 40780157 40780483 -143508179 - AluSx SINE Alu -5 307 1 1718 135 0 83 chr4 40780483 40780618 -143508044 - AluSx SINE Alu -166 146 1 596 311 32 44 chr4 40780618 40780810 -143507852 - MIR SINE MIR -69 193 3 2348 75 0 3 chr4 40780836 40781142 -143507520 + AluY SINE Alu 1 305 -6 772 209 68 0 chr4 40781171 40781334 -143507328 - AluJb SINE Alu -5 307 134 1756 182 16 3 chr4 40781335 40781643 -143507019 - AluJo SINE Alu 0 312 1 1216 154 68 45 chr4 40781817 40782109 -143506553 + AluSx SINE Alu 1 299 -13 209 257 29 29 chr4 40782197 40782302 -143506360 + (TATG)n Simple_repeat Simple_repeat 2 106 0 1200 120 0 0 chr4 40782308 40782483 -143506179 - AluSg/x SINE Alu -18 294 120 388 163 0 50 chr4 40782489 40782569 -143506093 - AluS SINE Alu 0 302 227 2228 82 3 3 chr4 40782591 40782883 -143505779 + AluSg SINE Alu 5 296 -14 2110 113 0 7 chr4 40782895 40783196 -143505466 + AluSg SINE Alu 1 299 -11 1121 171 3 147 chr4 40783201 40783377 -143505285 + AluJb SINE Alu 5 112 -190 1997 127 3 0 chr4 40783377 40783668 -143504994 + AluSp SINE Alu 4 295 -18 1121 171 3 147 chr4 40783668 40783824 -143504838 + AluJb SINE Alu 112 289 -13 945 114 14 0 chr4 40783831 40783971 -143504691 + AluSq/x SINE Alu 1 142 -171 311 195 13 52 chr4 40784101 40784178 -143504484 + L1MC4 LINE L1 6648 6721 -1321 869 202 52 0 chr4 40784638 40784811 -143503851 - AluJb SINE Alu -13 299 118 819 164 0 0 chr4 40785042 40785170 -143503492 + FLAM_C SINE Alu 5 132 -1 1621 129 111 7 chr4 40785233 40785512 -143503150 + AluSg SINE Alu 1 308 -2 1524 183 3 13 chr4 40785637 40785938 -143502724 + AluJb SINE Alu 11 308 -4 1484 158 79 0 chr4 40786018 40786297 -143502365 + AluSx SINE Alu 1 301 -11 366 23 0 0 chr4 40786298 40786341 -143502321 + (CA)n Simple_repeat Simple_repeat 2 44 0 710 82 0 21 chr4 40786472 40786569 -143502093 - U6 snRNA snRNA 0 107 13 2210 111 0 0 chr4 40786701 40786999 -143501663 + AluSx SINE Alu 1 298 -14 1818 134 53 0 chr4 40787007 40787291 -143501371 + AluSx SINE Alu 1 299 -13 1986 88 29 0 chr4 40787667 40787939 -143500723 + AluY SINE Alu 1 280 -31 1045 167 0 0 chr4 40787955 40788129 -143500533 + AluSg/x SINE Alu 132 305 -7 911 140 37 30 chr4 40788191 40788318 -143500344 + AluSx SINE Alu 11 141 -171 1938 131 0 10 chr4 40788318 40788615 -143500047 + AluSq SINE Alu 1 294 -19 911 140 37 30 chr4 40788615 40788651 -143500011 + AluSx SINE Alu 141 175 -137 1416 184 50 14 chr4 40788708 40788985 -143499677 + AluJb SINE Alu 1 287 -25 515 203 8 17 chr4 40789058 40789176 -143499486 - AluSc SINE Alu -16 293 177 466 218 76 76 chr4 40789370 40789567 -143499095 + L1MC4a LINE L1 6477 6673 -1135 1319 197 52 21 chr4 40789570 40789859 -143498803 + AluJo SINE Alu 2 299 -3 1330 110 237 0 chr4 40789864 40790121 -143498541 + AluSg SINE Alu 3 313 0 1273 276 131 28 chr4 40790168 40790618 -143498044 + MLT1H1 LTR MaLR 1 510 -45 2463 117 26 78 chr4 40790618 40791115 -143497547 + L1MB3 LINE L1 5710 6180 -3 1273 276 131 28 chr4 40791115 40791167 -143497495 + MLT1H1 LTR MaLR 510 555 0 2117 113 10 3 chr4 40791863 40792165 -143496497 + AluSq SINE Alu 1 304 -9 2022 138 3 3 chr4 40792170 40792475 -143496187 + AluSx SINE Alu 1 305 -7 2172 110 0 3 chr4 40792514 40792824 -143495838 + AluSg SINE Alu 2 310 0 1295 97 11 5 chr4 40792825 40793010 -143495652 + AluSq SINE Alu 1 186 -127 355 125 0 36 chr4 40793010 40793093 -143495569 + AluSc SINE Alu 228 308 0 740 179 0 8 chr4 40793266 40793389 -143495273 - AluJb SINE Alu -178 134 13 488 47 0 0 chr4 40793492 40793556 -143495106 - AluSp/q SINE Alu -12 301 238 1389 103 5 0 chr4 40793581 40793775 -143494887 - AluSp SINE Alu -14 299 105 433 81 48 0 chr4 40793875 40793937 -143494725 - L1MC/D LINE L1 -420 5822 5758 2181 117 0 0 chr4 40793953 40794252 -143494410 - AluSx SINE Alu -13 299 1 650 269 22 70 chr4 40794253 40794524 -143494138 - HAL1 LINE L1 -1614 893 636 1750 110 4 19 chr4 40794683 40794947 -143493715 - AluSg SINE Alu -8 302 43 195 100 0 0 chr4 40794972 40795002 -143493660 + (A)n Simple_repeat Simple_repeat 1 30 0 1967 123 3 10 chr4 40795028 40795329 -143493333 - AluSx SINE Alu -13 299 1 849 166 3 180 chr4 40795930 40796069 -143492593 - MER96B DNA MER1_type? -183 234 72 2290 80 0 7 chr4 40796069 40796370 -143492292 + AluSp SINE Alu 1 299 -14 849 166 3 180 chr4 40796370 40796390 -143492272 - MER96B DNA MER1_type? -345 72 50 1824 132 0 40 chr4 40796390 40796525 -143492137 + AluSq SINE Alu 1 140 -173 2149 58 0 0 chr4 40796525 40796785 -143491877 + AluY SINE Alu 40 299 -12 1824 132 0 40 chr4 40796785 40796952 -143491710 + AluSq SINE Alu 140 291 -22 849 166 3 180 chr4 40796952 40797075 -143491587 - MER96B DNA MER1_type? -367 50 1 180 0 0 0 chr4 40797084 40797104 -143491558 + (T)n Simple_repeat Simple_repeat 1 20 0 289 220 0 0 chr4 40797211 40797270 -143491392 - MER2 DNA MER2_type -9 336 278 2023 121 3 10 chr4 40797270 40797584 -143491078 + AluSp SINE Alu 1 312 -1 1797 136 0 7 chr4 40797590 40797876 -143490786 + AluJb SINE Alu 5 288 -24 2401 68 0 0 chr4 40797906 40798213 -143490449 + AluY SINE Alu 1 307 -4 1746 79 0 0 chr4 40798245 40798474 -143490188 + AluY SINE Alu 1 229 -82 484 111 0 0 chr4 40798574 40798637 -143490025 - AluY SINE Alu -30 281 219 1818 147 0 0 chr4 40798693 40798972 -143489690 - AluSx SINE Alu -33 279 1 23 54 0 0 chr4 40799236 40799273 -143489389 + AT_rich Low_complexity Low_complexity 1 37 0 1932 111 17 0 chr4 40799653 40799942 -143488720 + AluSx SINE Alu 11 304 -8 718 247 7 0 chr4 40799943 40800097 -143488565 - MER3 DNA MER1_type -54 155 1 2076 126 0 7 chr4 40800133 40800443 -143488219 - AluSx SINE Alu -2 310 3 906 66 0 8 chr4 40800589 40800711 -143487951 - AluSc SINE Alu -188 121 1 947 174 0 0 chr4 40800820 40801011 -143487651 - AluSg/x SINE Alu 0 322 132 2152 96 0 3 chr4 40801011 40801303 -143487359 - AluSx SINE Alu -21 291 1 2051 118 7 0 chr4 40801314 40801611 -143487051 - AluSg SINE Alu -11 299 1 1984 130 3 0 chr4 40801613 40801906 -143486756 - AluSx SINE Alu -18 294 1 324 0 0 0 chr4 40802057 40802093 -143486569 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 337 178 11 67 chr4 40802094 40802184 -143486478 - MLT1E1 LTR MaLR -402 252 168 1039 181 5 0 chr4 40802350 40802538 -143486124 - AluJ SINE Alu -19 293 105 236 200 53 13 chr4 40802611 40802686 -143485976 + L1MC4 LINE L1 6628 6705 -1337 417 323 0 0 chr4 40802693 40802866 -143485796 + (TA)n Simple_repeat Simple_repeat 1 271 -36 309 313 0 42 chr4 40802866 40802962 -143485700 - L1MC4 LINE L1 -1337 6705 6614 417 323 0 0 chr4 40802962 40803000 -143485662 + (TA)n Simple_repeat Simple_repeat 270 307 0 238 152 43 0 chr4 40803000 40803046 -143485616 - L1MC3 LINE L1 -1139 6646 6599 2195 96 3 7 chr4 40803050 40803342 -143485320 - AluSg SINE Alu -19 291 1 768 125 0 17 chr4 40803367 40803487 -143485175 - AluJ SINE Alu -184 118 1 2252 148 80 48 chr4 40803488 40803926 -143484736 + MLT2B3 LTR ERVL 103 554 0 333 316 70 13 chr4 40803927 40804085 -143484577 - L2 LINE L2 -1324 1990 1824 3532 194 42 57 chr4 40804092 40804225 -143484437 + L1MC4a LINE L1 6553 6687 -1121 2002 132 42 0 chr4 40804225 40804513 -143484149 + AluSx SINE Alu 1 300 -12 1623 113 0 4 chr4 40804517 40804748 -143483914 + AluSq SINE Alu 81 310 -3 3532 194 42 57 chr4 40804748 40804794 -143483868 + L1MC4a LINE L1 6690 6735 -1073 2013 130 3 59 chr4 40804794 40805118 -143483544 + AluJb SINE Alu 1 306 -6 3532 194 42 57 chr4 40805118 40805317 -143483345 + L1MC4a LINE L1 6735 6936 -872 1736 184 7 7 chr4 40805317 40805627 -143483035 + AluJo SINE Alu 1 310 -2 3532 194 42 57 chr4 40805627 40805819 -143482843 + L1MC4a LINE L1 6936 7129 -679 2457 72 0 25 chr4 40805819 40806159 -143482503 - AluY SINE Alu 0 311 2 3532 194 42 57 chr4 40806159 40806300 -143482362 + L1MC4a LINE L1 7129 7271 -537 1745 172 7 10 chr4 40806300 40806603 -143482059 + AluJo SINE Alu 3 304 -8 3532 194 42 57 chr4 40806603 40806925 -143481737 + L1MC4a LINE L1 7271 7492 -316 1253 226 10 24 chr4 40806930 40807222 -143481440 + AluJo SINE Alu 6 293 -19 822 143 0 0 chr4 40807223 40807349 -143481313 + L1MD3 LINE L1 7657 7782 -213 1253 131 5 30 chr4 40807349 40807581 -143481081 + AluSg/x SINE Alu 94 312 0 2349 79 3 0 chr4 40807582 40807874 -143480788 + AluY SINE Alu 1 293 -18 1031 177 9 9 chr4 40807874 40808089 -143480573 + L1MD3 LINE L1 7775 7989 -6 2179 113 0 0 chr4 40808146 40808469 -143480193 + AluSx SINE Alu 1 323 0 264 216 81 0 chr4 40808729 40808803 -143479859 + MIR SINE MIR 74 153 -109 437 226 20 10 chr4 40808812 40808914 -143479748 + MLT1J1 LTR MaLR 1 103 -343 2353 104 0 0 chr4 40809218 40809516 -143479146 + AluSq SINE Alu 1 298 -15 310 209 191 35 chr4 40809519 40809634 -143479028 + FLAM_A SINE Alu 1 133 0 2359 110 0 0 chr4 40809674 40809982 -143478680 + AluSg SINE Alu 1 308 -2 1219 150 16 5 chr4 40810384 40810577 -143478085 - AluJb SINE Alu -13 299 105 2505 164 63 36 chr4 40810705 40810792 -143477870 + MER4E LTR ERV1 92 175 -604 2201 85 0 61 chr4 40810792 40810981 -143477681 - AluSc SINE Alu 0 309 147 2205 102 3 0 chr4 40810981 40811275 -143477387 - AluSg SINE Alu -15 295 1 2201 85 0 61 chr4 40811275 40811414 -143477248 - AluSc SINE Alu -162 147 1 2505 164 63 36 chr4 40811414 40811821 -143476841 + MER4E LTR ERV1 175 599 -180 1002 154 59 0 chr4 40811825 40811994 -143476668 - AluSg/x SINE Alu -2 310 132 1178 146 0 0 chr4 40812172 40812350 -143476312 - AluSg/x SINE Alu 0 310 133 2257 109 0 0 chr4 40812351 40812644 -143476018 - AluSx SINE Alu -19 293 1 832 117 0 29 chr4 40813887 40814024 -143474638 + FLAM_C SINE Alu 1 133 0 1154 153 0 0 chr4 40814033 40814209 -143474453 - AluSg/x SINE Alu -3 307 132 1951 158 0 0 chr4 40814236 40814540 -143474122 + AluJb SINE Alu 1 304 -8 213 367 27 27 chr4 40814550 40814697 -143473965 - MIR SINE MIR -113 149 3 1726 179 20 3 chr4 40815022 40815319 -143473343 + AluJo SINE Alu 1 302 -10 28 0 0 0 chr4 40815404 40815432 -143473230 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 40815531 40815552 -143473110 + AT_rich Low_complexity Low_complexity 1 21 0 195 129 0 0 chr4 40815668 40815699 -143472963 + (T)n Simple_repeat Simple_repeat 1 31 0 2053 148 3 0 chr4 40816193 40816503 -143472159 + AluSx SINE Alu 1 311 -1 303 244 45 119 chr4 40816519 40816830 -143471832 - MLT1K LTR MaLR -12 576 289 665 157 104 0 chr4 40816886 40817001 -143471661 - FLAM_A SINE Alu -6 127 1 2035 117 0 64 chr4 40817039 40817365 -143471297 + AluSx SINE Alu 1 305 -7 2098 99 10 30 chr4 40817369 40817507 -143471155 + AluSx SINE Alu 1 140 -172 2184 90 25 0 chr4 40817507 40817814 -143470848 + AluSp SINE Alu 1 314 0 2098 99 10 30 chr4 40817814 40817976 -143470686 + AluSx SINE Alu 140 296 -16 1033 201 141 34 chr4 40817983 40818075 -143470587 + AluJo SINE Alu 6 87 -225 2310 100 7 0 chr4 40818075 40818375 -143470287 + AluSx SINE Alu 1 302 -10 1033 201 141 34 chr4 40818375 40818545 -143470117 + AluJo SINE Alu 87 296 -16 469 0 0 32 chr4 40818677 40818740 -143469922 + (TCCA)n Simple_repeat Simple_repeat 3 63 0 479 254 137 34 chr4 40818775 40819048 -143469614 - L1MC4a LINE L1 -394 5771 5652 322 240 23 31 chr4 40819019 40819148 -143469514 - L1MC4a LINE L1 -2427 5381 5254 * 1515 129 22 9 chr4 40819566 40819791 -143468871 + AluSx SINE Alu 37 264 -48 186 71 0 0 chr4 40819796 40819824 -143468838 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 2295 106 0 3 chr4 40820084 40820387 -143468275 + AluSx SINE Alu 1 302 -10 345 188 59 20 chr4 40820856 40820957 -143467705 - MER103 DNA DNA -8 158 54 1480 157 0 0 chr4 40821142 40821365 -143467297 - AluJb SINE Alu -4 308 86 1449 161 0 0 chr4 40821463 40821680 -143466982 - AluJb SINE Alu -11 301 85 220 248 101 0 chr4 40821761 40821888 -143466774 - MIR SINE MIR -27 235 86 2270 105 0 0 chr4 40822082 40822376 -143466286 - AluSg SINE Alu -16 294 1 2709 45 0 0 chr4 40822882 40823192 -143465470 - AluY SINE Alu -1 310 1 1821 134 11 4 chr4 40823449 40823724 -143464938 + AluSq SINE Alu 1 277 -36 264 59 0 0 chr4 40824859 40824893 -143463769 + (CCA)n Simple_repeat Simple_repeat 1 34 0 1839 155 3 0 chr4 40827975 40828271 -143460391 - AluJb SINE Alu -15 297 1 207 0 0 0 chr4 40828536 40828559 -143460103 + (TATG)n Simple_repeat Simple_repeat 2 24 0 1352 137 173 12 chr4 40828559 40828801 -143459861 - AluSg SINE Alu -18 282 1 379 299 111 0 chr4 40828939 40829083 -143459579 - MIR SINE MIR -36 226 67 894 129 0 15 chr4 40829150 40829282 -143459380 - FLAM_C SINE Alu 0 133 4 2125 126 0 0 chr4 40829402 40829696 -143458966 - AluSx SINE Alu -18 294 1 1827 179 0 7 chr4 40829754 40830055 -143458607 - AluJo SINE Alu -13 299 1 760 157 0 57 chr4 40830124 40830264 -143458398 - FLAM_C SINE Alu 0 133 2 1218 138 0 0 chr4 40830334 40830501 -143458161 - AluSg/x SINE Alu -26 286 120 2186 113 0 0 chr4 40830507 40830818 -143457844 - AluSq SINE Alu 0 312 2 2221 107 3 0 chr4 40830821 40831119 -143457543 - AluSq SINE Alu -14 299 1 190 28 28 56 chr4 40831163 40831199 -143457463 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1927 93 0 0 chr4 40831233 40831479 -143457183 - AluY SINE Alu -11 300 55 501 314 104 9 chr4 40831486 40831706 -143456956 + L2 LINE L2 2532 2772 -542 246 287 7 100 chr4 40831886 40832036 -143456626 + L2 LINE L2 2948 3083 -189 298 200 71 35 chr4 40832326 40832411 -143456251 - MLT1K LTR MaLR -2 586 499 2231 107 3 3 chr4 40832774 40832785 -143455877 - AluSq SINE Alu -13 300 290 194 0 0 37 chr4 40832785 40832812 -143455850 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2231 107 3 3 chr4 40832812 40833100 -143455562 - AluSq SINE Alu -22 291 1 720 148 19 0 chr4 40833143 40833251 -143455411 - FLAM_C SINE Alu -32 111 2 2311 94 0 0 chr4 40833442 40833728 -143454934 - AluSg SINE Alu -23 287 2 2064 96 14 14 chr4 40833944 40834224 -143454438 - AluSg SINE Alu -30 280 1 266 343 50 0 chr4 40834445 40834544 -143454118 - L2 LINE L2 -965 2349 2246 2314 99 0 0 chr4 40835092 40835385 -143453277 - AluSc SINE Alu -16 293 1 2176 140 0 3 chr4 40835470 40835777 -143452885 - AluSx SINE Alu -6 306 1 4643 171 32 23 chr4 40835876 40836207 -143452455 - L1MB2 LINE L1 0 6171 5844 1897 149 30 17 chr4 40836207 40836509 -143452153 - AluJb SINE Alu -6 306 1 4643 171 32 23 chr4 40836509 40836844 -143451818 - L1MB2 LINE L1 -327 5844 5513 1945 138 65 0 chr4 40836844 40837134 -143451528 - AluSx SINE Alu -3 309 1 4643 171 32 23 chr4 40837134 40837960 -143450702 - L1MB2 LINE L1 -658 5513 4664 2416 84 6 3 chr4 40837991 40838302 -143450360 + AluSx SINE Alu 1 312 0 1667 124 98 4 chr4 40838310 40838576 -143450086 + AluSx SINE Alu 1 291 -21 1484 159 32 62 chr4 40838780 40839089 -143449573 + AluJo SINE Alu 1 300 -12 325 244 154 0 chr4 40839235 40839358 -143449304 - L1MC4 LINE L1 -26 8016 7875 1853 152 0 7 chr4 40839605 40839888 -143448774 - AluJb SINE Alu -14 298 18 1562 139 0 0 chr4 40839973 40840196 -143448466 - AluSg/x SINE Alu -6 304 82 460 274 35 27 chr4 40840397 40840717 -143447945 - L1MC5 LINE L1 -547 7495 7260 2352 96 3 0 chr4 40840717 40841020 -143447642 - AluSq SINE Alu -9 304 1 216 0 0 0 chr4 40841045 40841069 -143447593 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1087 135 0 6 chr4 40841074 40841230 -143447432 - AluSg/x SINE Alu -24 288 134 1731 150 0 66 chr4 40841230 40841397 -143447265 - AluSx SINE Alu -13 299 161 2392 90 0 0 chr4 40841397 40841697 -143446965 - AluSc SINE Alu -9 300 1 1731 150 0 66 chr4 40841697 40841849 -143446813 - AluSx SINE Alu -151 161 1 2048 109 29 29 chr4 40841862 40842174 -143446488 - AluSx SINE Alu 0 312 1 437 231 43 62 chr4 40842182 40842416 -143446246 - L1MC4 LINE L1 -728 7233 7028 21 0 0 0 chr4 40842509 40842530 -143446132 + AT_rich Low_complexity Low_complexity 1 21 0 1184 168 0 5 chr4 40842753 40842938 -143445724 - AluJo SINE Alu -19 293 110 416 226 11 11 chr4 40843050 40843143 -143445519 - AluJ/FLAM SINE Alu -209 93 1 482 73 0 0 chr4 40843174 40843242 -143445420 + Alu SINE Alu 241 308 -4 342 0 0 0 chr4 40843243 40843281 -143445381 + (TA)n Simple_repeat Simple_repeat 1 38 0 3708 218 81 25 chr4 40843281 40843868 -143444794 - L1M4 LINE L1 -2380 3766 3213 2400 110 0 0 chr4 40843868 40844178 -143444484 - AluSx SINE Alu -2 310 1 2254 122 0 0 chr4 40844183 40844478 -143444184 - AluSq SINE Alu -18 295 1 3708 218 81 25 chr4 40844478 40844650 -143444012 - L1M4 LINE L1 -2936 3210 3049 1729 149 0 58 chr4 40844650 40844808 -143443854 - AluSx SINE Alu -21 291 158 1730 132 62 7 chr4 40844808 40845130 -143443532 - AluSp SINE Alu 0 313 5 1729 149 0 58 chr4 40845130 40845280 -143443382 - AluSx SINE Alu -154 158 1 3708 218 81 25 chr4 40845280 40845778 -143442884 - L1M4 LINE L1 -3097 3049 2431 2165 119 13 0 chr4 40845778 40846080 -143442582 - AluSp SINE Alu 0 313 8 1263 160 91 9 chr4 40846080 40846311 -143442351 - AluSx SINE Alu -62 250 1 2221 96 14 3 chr4 40846325 40846616 -143442046 - AluSq SINE Alu -19 294 1 363 243 10 10 chr4 40846619 40846722 -143441940 - L1M4 LINE L1 -3710 2436 2334 439 125 14 0 chr4 40846731 40846803 -143441859 + MER3 DNA MER1_type 137 209 0 305 301 45 61 chr4 40846812 40847058 -143441604 - L2 LINE L2 -122 3191 2950 537 276 107 5 chr4 40847058 40847254 -143441408 - L2 LINE L2 -517 2797 2582 292 226 0 60 chr4 40847275 40847359 -143441303 - L2 LINE L2 -943 2371 2293 1810 252 152 9 chr4 40847384 40848185 -143440477 - L2 LINE L2 -92 3221 2292 1102 188 20 0 chr4 40849084 40849281 -143439381 - MER20 DNA MER1_type -17 202 2 409 289 0 9 chr4 40849284 40849398 -143439264 + L2 LINE L2 3191 3303 -10 380 263 206 31 chr4 40849452 40849612 -143439050 + MIR SINE MIR 2 189 -73 344 318 71 30 chr4 40850217 40850482 -143438180 - L1ME LINE L1 -375 5746 5458 2220 96 0 23 chr4 40850482 40850785 -143437877 - AluSq SINE Alu -17 296 1 344 318 71 30 chr4 40850785 40850915 -143437747 - L1ME LINE L1 -663 5458 5335 805 248 64 4 chr4 40851276 40851510 -143437152 - MIR SINE MIR -14 248 1 1696 168 32 23 chr4 40851598 40851907 -143436755 - AluJb SINE Alu 0 312 1 434 247 115 39 chr4 40851939 40852121 -143436541 + MIR SINE MIR 19 214 -48 2139 96 0 11 chr4 40852386 40852690 -143435972 - AluSx SINE Alu 0 306 6 29 0 0 0 chr4 40853149 40853178 -143435484 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 40853236 40853257 -143435405 + AT_rich Low_complexity Low_complexity 1 21 0 205 152 0 0 chr4 40853273 40853306 -143435356 + (TTG)n Simple_repeat Simple_repeat 3 35 0 2472 45 7 0 chr4 40855195 40855487 -143433175 - AluY SINE Alu -17 294 1 2328 65 7 0 chr4 40856043 40856333 -143432329 - AluY SINE Alu -15 296 5 1484 138 9 5 chr4 40856561 40856785 -143431877 - AluSg/x SINE Alu -12 300 76 * 1942 159 0 10 chr4 40856784 40857086 -143431576 - AluJo SINE Alu -13 299 1 540 186 0 20 chr4 40857205 40857307 -143431355 + L2 LINE L2 3187 3286 -27 1049 216 39 0 chr4 40857563 40857771 -143430891 - AluJo SINE Alu -15 297 82 1740 139 0 0 chr4 40857777 40858029 -143430633 - AluSx SINE Alu -5 307 56 1595 158 88 0 chr4 40858337 40858609 -143430053 - AluJo SINE Alu -14 298 3 2148 119 3 0 chr4 40858625 40858919 -143429743 - AluSx SINE Alu -17 295 1 291 267 12 0 chr4 40858994 40859080 -143429582 + MIR SINE MIR 160 246 -16 1767 150 3 36 chr4 40859162 40859469 -143429193 - AluSx SINE Alu -15 297 1 2334 82 0 10 chr4 40859556 40859848 -143428814 - AluSg SINE Alu -20 290 2 2258 119 0 0 chr4 40860056 40860350 -143428312 - AluSc SINE Alu -15 294 1 532 252 39 0 chr4 40860524 40860651 -143428011 + MIR SINE MIR 60 191 -71 2205 129 0 0 chr4 40860671 40860966 -143427696 + AluSx SINE Alu 1 295 -17 2937 163 150 63 chr4 40861031 40861802 -143426860 - L1MB8 LINE L1 -2 6176 5327 2065 118 0 0 chr4 40861802 40862073 -143426589 - AluSx SINE Alu -41 271 1 2937 163 150 63 chr4 40862073 40862128 -143426534 - L1MB8 LINE L1 -851 5327 5278 698 220 67 0 chr4 40862334 40862543 -143426119 - L1MD3 LINE L1 -8 7987 7765 2235 104 0 0 chr4 40862567 40862854 -143425808 - AluSg SINE Alu -23 287 1 2068 146 0 0 chr4 40862857 40863151 -143425511 - AluSx SINE Alu -18 294 1 22 0 0 0 chr4 40863675 40863697 -143424965 + AT_rich Low_complexity Low_complexity 1 22 0 2153 113 3 3 chr4 40863939 40864239 -143424423 - AluSq SINE Alu -13 300 1 341 270 87 93 chr4 40864242 40864542 -143424120 - L1ME4a LINE L1 -222 5882 5585 841 119 0 0 chr4 40865010 40865128 -143423534 - FLAM_C SINE Alu -15 118 1 1268 177 50 3 chr4 40865523 40865805 -143422857 - L1MB7 LINE L1 -78 6106 5812 391 301 22 11 chr4 40865806 40865989 -143422673 - L1ME4a LINE L1 -2365 3764 3580 908 276 98 54 chr4 40866067 40866452 -143422210 - L1ME4a LINE L1 -2740 3389 2955 1781 180 3 0 chr4 40866452 40866746 -143421916 + AluJb SINE Alu 2 296 -16 908 276 98 54 chr4 40866746 40867054 -143421608 - L1ME4a LINE L1 -3174 2955 2662 630 288 63 14 chr4 40867114 40867527 -143421135 - L1ME4a LINE L1 -3583 2546 2114 22 80 0 0 chr4 40867661 40867711 -143420951 + AT_rich Low_complexity Low_complexity 1 50 0 601 276 50 35 chr4 40867883 40868522 -143420140 - L1MEd LINE L1 -4586 1724 1043 251 269 0 26 chr4 40868611 40868689 -143419973 + L1MEd LINE L1 279 354 -5765 307 322 116 0 chr4 40868702 40868848 -143419814 + L1MEd LINE L1 591 753 -5366 2084 96 10 51 chr4 40869373 40869687 -143418975 + AluSp SINE Alu 1 301 -12 732 256 94 27 chr4 40870251 40870474 -143418188 + MIR SINE MIR 1 238 -24 259 301 14 0 chr4 40870914 40870987 -143417675 - L2 LINE L2 -4 3309 3236 29 28 0 0 chr4 40871027 40871063 -143417599 + AT_rich Low_complexity Low_complexity 1 36 0 1219 124 0 0 chr4 40873607 40873776 -143414886 - AluSg/x SINE Alu -9 301 133 1672 118 51 8 chr4 40874628 40874883 -143413779 - AluSc SINE Alu -43 266 1 2121 91 29 33 chr4 40874907 40875214 -143413448 - AluY SINE Alu -4 307 2 266 225 36 27 chr4 40875389 40875500 -143413162 - L1ME4a LINE L1 -1 6120 6009 2200 118 7 0 chr4 40875611 40875916 -143412746 + AluSx SINE Alu 1 307 -5 2158 125 0 3 chr4 40875941 40876078 -143412584 + AluSx SINE Alu 1 137 -175 2234 106 10 3 chr4 40876078 40876379 -143412283 + AluSp SINE Alu 1 303 -10 2158 125 0 3 chr4 40876379 40876546 -143412116 + AluSx SINE Alu 137 304 -8 670 157 50 6 chr4 40876640 40876799 -143411863 + L1MB7 LINE L1 5284 5449 -729 400 160 0 0 chr4 40876823 40876898 -143411764 + FLAM_C SINE Alu 64 138 -5 2437 70 0 0 chr4 40876951 40877249 -143411413 - AluY SINE Alu -13 298 1 215 241 0 0 chr4 40877372 40877426 -143411236 + A-rich Low_complexity Low_complexity 1 54 0 3464 159 34 12 chr4 40877428 40878105 -143410557 + L1MB7 LINE L1 5485 6176 -8 773 266 90 69 chr4 40878144 40878224 -143410438 - L2 LINE L2 -715 2599 2522 1943 109 33 4 chr4 40878224 40878500 -143410162 - AluSx SINE Alu -28 284 1 773 266 90 69 chr4 40878500 40878684 -143409978 - L2 LINE L2 -792 2522 2343 1694 139 25 96 chr4 40878684 40878881 -143409781 - AluSx SINE Alu -11 301 92 2029 92 60 0 chr4 40878881 40879163 -143409499 - AluSp SINE Alu -14 299 1 2349 101 0 0 chr4 40879163 40879459 -143409203 - AluSg SINE Alu -13 297 1 1694 139 25 96 chr4 40879459 40879584 -143409078 - AluSx SINE Alu -218 94 1 773 266 90 69 chr4 40879584 40879697 -143408965 - L2 LINE L2 -971 2343 2213 1175 152 11 11 chr4 40879699 40879890 -143408772 - AluJo SINE Alu -8 304 114 452 241 51 23 chr4 40879893 40880089 -143408573 - L2 LINE L2 -1148 2166 1916 702 110 0 131 chr4 40880141 40880206 -143408456 + FLAM_C SINE Alu 15 52 -260 1432 115 119 81 chr4 40880206 40880501 -143408161 - AluSq SINE Alu -5 308 3 702 110 0 131 chr4 40880501 40880580 -143408082 + FLAM_C SINE Alu 52 140 -172 2090 133 10 0 chr4 40880583 40880883 -143407779 - AluSx SINE Alu -9 303 1 37 23 0 0 chr4 40880965 40881009 -143407653 + AT_rich Low_complexity Low_complexity 1 44 0 1738 161 14 18 chr4 40881010 40881295 -143407367 - AluJo SINE Alu -26 286 3 278 274 35 9 chr4 40881331 40881444 -143407218 - L1M4 LINE L1 -3439 2707 2592 203 318 0 16 chr4 40881450 40881513 -143407149 + CT-rich Low_complexity Low_complexity 3 64 0 23 0 0 0 chr4 40881513 40881536 -143407126 + AT_rich Low_complexity Low_complexity 1 23 0 1745 175 4 4 chr4 40881622 40881902 -143406760 - AluSx SINE Alu -22 290 11 3047 203 70 67 chr4 40881947 40881994 -143406668 - L1MD1 LINE L1 -309 5933 5888 1735 99 61 87 chr4 40881994 40882306 -143406356 - AluSx SINE Alu -8 304 1 3047 203 70 67 chr4 40882306 40882751 -143405911 - L1MD1 LINE L1 -354 5888 5446 2175 114 3 0 chr4 40882751 40883048 -143405614 - AluSp SINE Alu -15 298 1 3047 203 70 67 chr4 40883048 40883182 -143405480 - L1MD1 LINE L1 -796 5446 5314 1648 172 0 60 chr4 40883182 40883513 -143405149 - AluJo SINE Alu 0 312 2 3047 203 70 67 chr4 40883513 40883684 -143404978 - L1MD1 LINE L1 -928 5314 5145 2213 126 0 0 chr4 40883684 40883985 -143404677 - AluSx SINE Alu -11 301 1 3047 203 70 67 chr4 40883985 40884730 -143403932 - L1MD1 LINE L1 -1097 5145 4382 879 199 28 38 chr4 40884730 40884898 -143403764 + MER6B DNA MER2_type 2 169 -696 2482 82 0 0 chr4 40884898 40885201 -143403461 + AluSx SINE Alu 1 303 -9 879 199 28 38 chr4 40885201 40885243 -143403419 + MER6B DNA MER2_type 169 210 0 3047 203 70 67 chr4 40885243 40885850 -143402812 - L1MD1 LINE L1 -1860 4382 3779 1652 174 7 11 chr4 40885850 40886131 -143402531 - AluJo SINE Alu -7 305 26 1833 163 13 7 chr4 40886236 40886543 -143402119 - AluJo SINE Alu -3 309 1 23 0 0 0 chr4 40886638 40886661 -143402001 + AT_rich Low_complexity Low_complexity 1 23 0 2219 103 0 0 chr4 40887091 40887405 -143401257 - AluSx SINE Alu 0 314 1 29 47 0 0 chr4 40887410 40887453 -143401209 + AT_rich Low_complexity Low_complexity 1 43 0 2513 53 0 3 chr4 40888362 40888663 -143399999 + AluSx SINE Alu 1 300 -12 1387 183 57 23 chr4 40889351 40889516 -143399146 - AluJb SINE Alu -2 310 129 2053 142 0 3 chr4 40889516 40889812 -143398850 - AluSx SINE Alu -13 299 5 1387 183 57 23 chr4 40889812 40889946 -143398716 - AluJb SINE Alu -183 129 1 1949 162 13 7 chr4 40889964 40890272 -143398390 - AluJb SINE Alu -2 310 1 2247 83 0 3 chr4 40890429 40890718 -143397944 - AluY SINE Alu -23 288 1 211 222 32 79 chr4 40890913 40890976 -143397686 - L3 LINE CR1 -2 1575 1516 21 0 0 0 chr4 40891109 40891130 -143397532 + AT_rich Low_complexity Low_complexity 1 21 0 2146 108 50 0 chr4 40891279 40891576 -143397086 - AluSx SINE Alu 0 312 1 29 0 0 0 chr4 40891590 40891619 -143397043 + AT_rich Low_complexity Low_complexity 1 29 0 934 188 12 0 chr4 40891802 40891972 -143396690 - AluSc SINE Alu -5 304 133 200 35 35 0 chr4 40891974 40892003 -143396659 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2090 128 0 0 chr4 40892003 40892284 -143396378 - AluSx SINE Alu -31 281 1 713 188 0 43 chr4 40892392 40892530 -143396132 - FLAM_C SINE Alu -1 132 1 1487 176 79 21 chr4 40892808 40893087 -143395575 - AluJo SINE Alu -17 295 1 1044 195 83 25 chr4 40893273 40893514 -143395148 - AluJo SINE Alu -12 300 46 265 346 12 12 chr4 40894188 40894350 -143394312 + (TATATG)n Simple_repeat Simple_repeat 3 164 0 1037 145 64 51 chr4 40894773 40895007 -143393655 - Tigger7 DNA MER2_type 0 2491 2255 28 29 0 0 chr4 40895120 40895155 -143393507 + AT_rich Low_complexity Low_complexity 1 35 0 331 291 104 80 chr4 40895477 40895766 -143392896 - L1M4 LINE L1 -2225 3921 3626 2282 106 0 0 chr4 40896092 40896393 -143392269 - AluSx SINE Alu -11 301 1 824 201 7 0 chr4 40896399 40896553 -143392109 + Tigger4(Zombi) DNA MER2_type 2574 2728 -3 1958 130 7 11 chr4 40896582 40896866 -143391796 - AluJb SINE Alu -29 283 1 503 171 9 0 chr4 40897588 40897693 -143390969 + CT-rich Low_complexity Low_complexity 3 108 0 5319 20 0 0 chr4 40897700 40898309 -143390353 - L1PA3 LINE L1 0 6155 5547 194 0 0 37 chr4 40898309 40898336 -143390326 + (TTTC)n Simple_repeat Simple_repeat 1 26 0 2189 86 4 14 chr4 40898336 40898616 -143390046 - AluSq SINE Alu -33 280 4 432 0 0 0 chr4 40899096 40899144 -143389518 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 2169 96 0 10 chr4 40899144 40899436 -143389226 - AluSx SINE Alu -23 289 1 709 201 6 41 chr4 40900147 40900316 -143388346 - L1M4 LINE L1 -578 5606 5444 1910 194 49 75 chr4 40900333 40900889 -143387773 - MER74A LTR ERVL -17 541 1 3727 171 54 25 chr4 40900889 40901931 -143386731 - L1M4 LINE L1 -727 5451 4382 21 71 0 0 chr4 40901987 40902029 -143386633 + AT_rich Low_complexity Low_complexity 1 42 0 764 110 9 0 chr4 40902036 40902145 -143386517 - FLAM_C SINE Alu -33 110 1 330 274 0 0 chr4 40902157 40902230 -143386432 - L1M4 LINE L1 -1776 4370 4298 2290 100 0 3 chr4 40902240 40902540 -143386122 - AluSg SINE Alu -11 299 1 1822 113 117 11 chr4 40902558 40902840 -143385822 - AluJb SINE Alu 0 312 1 21 0 0 0 chr4 40902840 40902861 -143385801 + AT_rich Low_complexity Low_complexity 1 21 0 7445 62 12 42 chr4 40903330 40904894 -143383768 - SVA Other Other -520 1385 1 180 0 0 0 chr4 40904894 40904914 -143383748 + (GGGAGA)n Simple_repeat Simple_repeat 2 21 0 251 0 0 31 chr4 40904918 40904950 -143383712 + MER51A LTR ERV1 243 273 -361 1645 172 48 0 chr4 40906058 40906350 -143382312 - AluJb SINE Alu 0 305 1 2103 192 112 59 chr4 40906577 40907103 -143381559 - MLT2B3 LTR ERVL 0 554 1 1911 134 0 0 chr4 40907964 40908239 -143380423 - AluSx SINE Alu -3 309 35 316 290 159 9 chr4 40908443 40908550 -143380112 - L2 LINE L2 -5 3267 3145 2330 86 3 3 chr4 40908630 40908960 -143379702 + AluSx SINE Alu 1 312 0 1506 211 42 135 chr4 40909278 40909659 -143379003 - L1MA9 LINE L1 0 6300 5885 7173 52 38 21 chr4 40909659 40911251 -143377411 - SVA Other Other -723 1386 1 1506 211 42 135 chr4 40911251 40911401 -143377261 - L1MA9 LINE L1 -415 5885 5846 844 175 0 29 chr4 40911401 40911538 -143377124 - FLAM_C SINE Alu 0 133 1 1506 211 42 135 chr4 40911538 40911643 -143377019 - L1MA9 LINE L1 -454 5846 5733 233 100 40 60 chr4 40911645 40911695 -143376967 + Alu SINE Alu 250 298 -3 2386 221 117 13 chr4 40911713 40912337 -143376325 + L1MB7 LINE L1 5480 6168 -16 2539 67 0 10 chr4 40912361 40912675 -143375987 + AluY SINE Alu 1 311 0 1416 205 90 59 chr4 40912951 40913133 -143375529 + L1MC5 LINE L1 7251 7426 -535 1977 145 0 13 chr4 40913133 40913437 -143375225 + AluSx SINE Alu 1 300 -12 1416 205 90 59 chr4 40913437 40913766 -143374896 + L1MC5 LINE L1 7426 7778 -183 1689 161 14 10 chr4 40914028 40914320 -143374342 - AluSx SINE Alu -19 293 1 560 254 22 7 chr4 40914967 40915105 -143373557 - MIR SINE MIR -93 169 30 255 311 58 0 chr4 40915102 40915205 -143373457 + MIR SINE MIR 154 262 0 * 21 71 0 0 chr4 40917077 40917119 -143371543 + AT_rich Low_complexity Low_complexity 1 42 0 2263 108 3 19 chr4 40917858 40918174 -143370488 + AluSx SINE Alu 1 311 -1 1184 174 34 34 chr4 40919462 40919697 -143368965 + MER46A DNA MER2_type 2 236 0 21 0 0 0 chr4 40921047 40921068 -143367594 + AT_rich Low_complexity Low_complexity 1 21 0 1667 149 100 0 chr4 40921264 40921533 -143367129 + AluSx SINE Alu 1 296 -16 190 347 137 0 chr4 40921779 40921918 -143366744 - MIR SINE MIR -51 157 32 1085 293 80 27 chr4 40922077 40922527 -143366135 - MLT1J LTR MaLR -37 474 1 406 127 0 0 chr4 40922621 40922684 -143365978 - AluSq SINE Alu -11 300 238 1362 130 0 0 chr4 40922684 40922868 -143365794 - AluSq SINE Alu -129 184 1 1021 259 51 22 chr4 40923042 40923397 -143365265 + MER47A DNA MER2_type 1 365 -1 235 346 38 69 chr4 40923647 40923994 -143364668 + L1MC4a LINE L1 392 727 -5478 1205 201 165 35 chr4 40924008 40924529 -143364133 + L1MC5 LINE L1 7318 7906 -55 1588 130 169 8 chr4 40924968 40925222 -143363440 + AluSg SINE Alu 1 295 -5 1110 192 58 9 chr4 40925462 40925686 -143362976 - MLT2B3 LTR ERVL 0 554 320 1064 268 42 0 chr4 40925694 40925955 -143362707 - MLT1F1 LTR MaLR -293 274 3 244 293 73 0 chr4 40925956 40926038 -143362624 - MIR SINE MIR -24 238 151 1530 247 146 13 chr4 40926045 40926579 -143362083 + MLT1L LTR MaLR 3 607 -8 333 287 41 8 chr4 40926591 40926713 -143361949 - MIR SINE MIR -117 145 20 26 30 0 0 chr4 40927765 40927798 -143360864 + AT_rich Low_complexity Low_complexity 1 33 0 1788 160 29 0 chr4 40928013 40928288 -143360374 - AluSx SINE Alu -20 292 10 209 250 0 40 chr4 40928366 40928442 -143360220 + (TATATG)n Simple_repeat Simple_repeat 5 77 0 2287 112 3 0 chr4 40929156 40929461 -143359201 + AluSp SINE Alu 1 306 -7 1636 93 73 4 chr4 40929485 40929732 -143358930 - L1MA3 LINE L1 0 6305 6042 447 341 141 17 chr4 40929950 40930469 -143358193 + HAL1b LINE L1 118 1504 -648 488 248 40 28 chr4 40930898 40931191 -143357471 + L1MC4a LINE L1 2169 2315 -3902 1557 141 16 4 chr4 40931545 40931794 -143356868 + AluSx SINE Alu 45 296 -16 343 323 52 22 chr4 40931798 40932027 -143356635 + L1MC4a LINE L1 2832 3067 -3148 2268 112 3 0 chr4 40932083 40932387 -143356275 + AluSx SINE Alu 1 305 -7 1663 147 3 67 chr4 40932737 40933051 -143355611 + AluJb SINE Alu 1 294 -18 675 127 18 9 chr4 40933897 40934006 -143354656 + MLT1B LTR MaLR 1 110 -357 2144 146 47 71 chr4 40934006 40934317 -143354345 - MLT2A2 LTR ERVL 0 554 230 2080 107 0 30 chr4 40934317 40934615 -143354047 - AluSx SINE Alu -23 289 1 2144 146 47 71 chr4 40934615 40934840 -143353822 - MLT2A2 LTR ERVL -324 230 1 1369 131 30 102 chr4 40934841 40935146 -143353516 + MLT1B LTR MaLR 108 390 0 181 269 15 45 chr4 40935470 40935537 -143353125 - L3 LINE CR1 -16 1561 1497 281 245 0 41 chr4 40936191 40936289 -143352373 + T-rich Low_complexity Low_complexity 2 95 0 1643 136 8 0 chr4 40936497 40936732 -143351930 + AluJo SINE Alu 1 237 -75 1587 188 32 133 chr4 40936737 40936921 -143351741 + L1MA6 LINE L1 5593 5794 -506 2184 112 3 0 chr4 40936921 40937215 -143351447 + AluSx SINE Alu 1 295 -17 1587 188 32 133 chr4 40937215 40937418 -143351244 + L1MA6 LINE L1 5794 5902 -398 1499 172 40 40 chr4 40937418 40937721 -143350941 - AluJo SINE Alu -7 305 3 1587 188 32 133 chr4 40937721 40937928 -143350734 + L1MA6 LINE L1 5902 6128 -172 1673 128 69 10 chr4 40937939 40938228 -143350434 + AluSq SINE Alu 1 306 -7 2423 58 0 0 chr4 40938229 40938520 -143350142 + AluY SINE Alu 21 311 0 1930 139 63 27 chr4 40939123 40939454 -143349208 + MER61A LTR ERV1 1 343 0 2346 112 0 0 chr4 40939734 40940046 -143348616 + AluSx SINE Alu 1 312 0 192 309 73 0 chr4 40940128 40940196 -143348466 + MIR3 SINE MIR 121 193 -15 1082 94 7 0 chr4 40940431 40940580 -143348082 + AluSg/x SINE Alu 154 303 -9 247 181 60 78 chr4 40940687 40940803 -143347859 + L1MC4a LINE L1 3204 3317 -2898 767 53 21 0 chr4 40941482 40941576 -143347086 - AluS SINE Alu -215 97 2 706 245 106 72 chr4 40941608 40942266 -143346396 + L1MC4a LINE L1 5221 5472 -743 2283 105 0 0 chr4 40942383 40942677 -143345985 + AluSg SINE Alu 1 294 -16 1551 259 101 27 chr4 40942915 40943180 -143345482 - MLT1J LTR MaLR -2 509 265 2130 121 0 7 chr4 40943180 40943485 -143345177 + AluSx SINE Alu 3 305 -7 1551 259 101 27 chr4 40943485 40943693 -143344969 - MLT1J LTR MaLR -246 265 1 1429 119 23 9 chr4 40943961 40944179 -143344483 - AluJb SINE Alu -9 303 83 2121 117 0 0 chr4 40944208 40944490 -143344172 - AluSx SINE Alu -30 282 1 26 0 0 0 chr4 40944492 40944518 -143344144 + AT_rich Low_complexity Low_complexity 1 26 0 368 262 20 74 chr4 40944624 40944826 -143343836 - L1ME4a LINE L1 -194 5927 5737 2481 50 0 3 chr4 40944851 40945149 -143343513 - AluY SINE Alu -14 297 1 377 283 161 49 chr4 40945372 40945701 -143342961 - MLT1L LTR MaLR -241 374 9 23 0 0 0 chr4 40945873 40945896 -143342766 + AT_rich Low_complexity Low_complexity 1 23 0 370 289 25 0 chr4 40945999 40946120 -143342542 - L1ME4a LINE L1 0 6121 5998 2177 112 0 0 chr4 40946187 40946512 -143342150 + AluSx SINE Alu 1 325 0 392 228 0 65 chr4 40946729 40946821 -143341841 + MIR SINE MIR 72 157 -105 615 171 0 9 chr4 40947984 40948095 -143340567 - MER1B DNA MER1_type -187 110 1 488 113 0 0 chr4 40948156 40948227 -143340435 - L1ME4a LINE L1 -223 5898 5828 1014 110 0 7 chr4 40948997 40949133 -143339529 - AluJo SINE Alu -177 135 1 785 215 31 31 chr4 40949816 40949976 -143338686 + MIR SINE MIR 56 218 -44 1875 155 3 3 chr4 40949976 40950280 -143338382 + AluJb SINE Alu 1 304 -8 785 215 31 31 chr4 40950280 40950314 -143338348 + MIR SINE MIR 217 250 -12 2211 91 3 3 chr4 40950376 40950705 -143337957 + AluSx SINE Alu 1 329 0 2006 110 0 21 chr4 40951120 40951411 -143337251 + AluSq SINE Alu 1 285 -28 336 64 0 0 chr4 40951411 40951458 -143337204 + (CA)n Simple_repeat Simple_repeat 2 48 0 604 272 63 66 chr4 40951520 40951807 -143336855 + L2 LINE L2 3028 3313 0 23 0 0 0 chr4 40952198 40952221 -143336441 + AT_rich Low_complexity Low_complexity 1 23 0 1052 295 42 32 chr4 40952649 40953123 -143335539 - MARNA DNA Mariner -98 488 10 21 36 0 0 chr4 40953449 40953477 -143335185 + AT_rich Low_complexity Low_complexity 1 28 0 234 368 24 8 chr4 40954385 40954510 -143334152 + MIR SINE MIR 56 182 -80 287 25 25 0 chr4 40954987 40955027 -143333635 + (GA)n Simple_repeat Simple_repeat 1 41 0 1579 183 13 36 chr4 40956444 40956750 -143331912 - AluJo SINE Alu -13 299 1 25 0 0 0 chr4 40956752 40956777 -143331885 + AT_rich Low_complexity Low_complexity 1 25 0 2092 107 0 0 chr4 40956777 40957058 -143331604 - AluSx SINE Alu -31 281 1 330 355 118 33 chr4 40957642 40958031 -143330631 + L2 LINE L2 987 1408 -1906 210 296 136 30 chr4 40958219 40958351 -143330311 + L2 LINE L2 1791 1936 -1378 711 146 0 0 chr4 40959439 40959549 -143329113 + MSTD LTR MaLR 1 110 -286 1744 140 56 7 chr4 40960646 40960931 -143327731 + AluSg SINE Alu 1 299 -11 2444 55 0 0 chr4 40961291 40961583 -143327079 - AluY SINE Alu -15 296 5 471 257 0 18 chr4 40961699 40961808 -143326854 - L2 LINE L2 0 3313 3207 651 215 23 0 chr4 40961992 40962122 -143326540 - MER94 DNA DNA 0 134 2 289 240 171 0 chr4 40962845 40962974 -143325688 + L1ME4a LINE L1 5754 5904 -217 216 259 86 12 chr4 40963191 40963272 -143325390 - MIR SINE MIR -79 129 43 330 289 144 6 chr4 40963613 40963778 -143324884 - MIR SINE MIR -56 206 18 268 326 155 0 chr4 40964200 40964329 -143324333 - MIR3 SINE MIR -17 191 43 386 110 68 14 chr4 40964531 40964604 -143324058 - AluSg/x SINE Alu -140 162 86 998 157 17 61 chr4 40964604 40964834 -143323828 - AluJo SINE Alu -92 220 1 225 0 0 0 chr4 40965513 40965538 -143323124 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 971 163 0 0 chr4 40965666 40965826 -143322836 + AluSg/x SINE Alu 129 288 -24 1817 139 24 0 chr4 40965831 40966119 -143322543 + AluSx SINE Alu 1 295 -17 433 252 45 96 chr4 40966150 40966483 -143322179 + L1MC5 LINE L1 7611 7926 -35 2204 106 6 0 chr4 40966504 40966815 -143321847 - AluSp SINE Alu 0 313 1 305 147 133 0 chr4 40967767 40967842 -143320820 - L1ME4a LINE L1 -4 6117 6033 406 232 77 50 chr4 40967912 40968093 -143320569 - L1ME4a LINE L1 -187 5934 5749 1089 79 0 0 chr4 40968195 40968335 -143320327 - AluSg1 SINE Alu -169 140 1 1668 206 110 30 chr4 40968578 40968868 -143319794 + Charlie4a DNA MER1_type 1 343 -1618 1927 133 0 17 chr4 40968868 40969168 -143319494 + AluSq SINE Alu 1 295 -18 1668 206 110 30 chr4 40969168 40969339 -143319323 + Charlie4a DNA MER1_type 343 499 -9 269 169 0 92 chr4 40969350 40969415 -143319247 + L2 LINE L2 3254 3312 -1 2347 97 3 0 chr4 40969530 40969841 -143318821 + AluSq SINE Alu 1 312 -1 528 328 138 3 chr4 40969894 40970214 -143318448 - L2 LINE L2 -530 2784 2422 705 177 24 0 chr4 40970381 40970505 -143318157 + MLT1A1 LTR MaLR 239 365 0 4893 111 18 10 chr4 40970780 40971466 -143317196 + LTR8 LTR ERV1 1 691 0 628 234 122 54 chr4 40971480 40971685 -143316977 - MIR SINE MIR -35 227 9 256 119 24 24 chr4 40971931 40971973 -143316689 - AluSg/x SINE Alu -106 196 155 * 1154 157 127 4 chr4 40971971 40972207 -143316455 + MER58B DNA MER1_type 76 340 -1 365 246 30 75 chr4 40972211 40972345 -143316317 + MIR3 SINE MIR 3 130 -78 456 241 139 0 chr4 40972364 40972501 -143316161 + MIR SINE MIR 9 164 -98 471 266 8 23 chr4 40972537 40972665 -143315997 + MIR SINE MIR 137 262 0 291 327 29 19 chr4 40972668 40972772 -143315890 + MIR SINE MIR 157 261 -1 257 295 95 33 chr4 40972870 40973080 -143315582 - L2 LINE L2 -237 3035 2813 304 250 16 133 chr4 40973088 40973216 -143315446 - L3 LINE CR1 -580 997 885 1491 153 3 92 chr4 40973216 40973542 -143315120 + AluSq SINE Alu 1 297 -16 274 342 124 43 chr4 40973577 40973811 -143314851 - L2 LINE L2 -13 3259 3007 180 0 0 0 chr4 40974432 40974452 -143314210 + (A)n Simple_repeat Simple_repeat 1 20 0 27 62 0 0 chr4 40975225 40975273 -143313389 + AT_rich Low_complexity Low_complexity 1 48 0 2354 81 0 0 chr4 40975581 40975890 -143312772 + AluSx SINE Alu 1 309 -3 2100 130 0 7 chr4 40976292 40976600 -143312062 - AluSg SINE Alu -4 306 1 407 279 0 10 chr4 40976716 40976820 -143311842 - MIR SINE MIR -6 256 154 1014 99 13 20 chr4 40976823 40976975 -143311687 + AluSq/x SINE Alu 1 151 -161 * 1386 157 0 0 chr4 40976974 40977191 -143311471 + AluSg/x SINE Alu 88 304 -6 21 0 0 0 chr4 40977316 40977337 -143311325 + AT_rich Low_complexity Low_complexity 1 21 0 1890 170 51 48 chr4 40977933 40978328 -143310334 + MSTD LTR MaLR 1 396 0 572 275 54 0 chr4 40978412 40978561 -143310101 + L2 LINE L2 1825 1981 -1333 1595 198 13 0 chr4 40978735 40979043 -143309619 - AluSx SINE Alu 0 312 1 1153 153 0 5 chr4 40979217 40979406 -143309256 - AluSx SINE Alu -124 188 1 249 303 28 37 chr4 40979430 40979539 -143309123 + MIR SINE MIR 154 261 -1 1810 99 84 0 chr4 40979767 40980040 -143308622 - AluSx SINE Alu -16 296 1 2064 131 3 0 chr4 40980698 40981010 -143307652 + AluSq SINE Alu 1 313 0 1746 159 13 25 chr4 40981030 40981344 -143307318 + AluJo SINE Alu 1 310 -2 24 0 0 0 chr4 40981540 40981564 -143307098 + AT_rich Low_complexity Low_complexity 1 24 0 1041 80 0 20 chr4 40981564 40981715 -143306947 + AluY SINE Alu 163 310 -1 28 0 0 0 chr4 40981715 40981743 -143306919 + AT_rich Low_complexity Low_complexity 1 28 0 289 241 35 11 chr4 40981864 40981951 -143306711 + MIR SINE MIR 56 145 -63 1689 183 30 19 chr4 40982130 40982491 -143306171 + MLT1A1 LTR MaLR 1 365 0 1927 112 58 10 chr4 40983911 40984205 -143304457 - AluSg SINE Alu -2 308 1 209 321 0 0 chr4 40984738 40984794 -143303868 + CT-rich Low_complexity Low_complexity 2 57 0 2051 113 14 0 chr4 40985150 40985443 -143303219 + AluSx SINE Alu 1 297 -15 485 299 176 0 chr4 40985576 40985763 -143302899 + MIR SINE MIR 12 231 -31 222 233 0 0 chr4 40985800 40985860 -143302802 + (TATATG)n Simple_repeat Simple_repeat 1 60 0 186 43 0 0 chr4 40985860 40985883 -143302779 + (CA)n Simple_repeat Simple_repeat 1 23 0 386 295 115 19 chr4 40985993 40986149 -143302513 + L1ME4a LINE L1 5840 6010 -111 2129 122 0 0 chr4 40986526 40986830 -143301832 - AluSx SINE Alu -7 305 2 425 278 126 7 chr4 40986923 40987074 -143301588 + MIR3 SINE MIR 19 187 -21 471 374 87 0 chr4 40987538 40987768 -143300894 + MIR SINE MIR 13 262 0 225 194 190 110 chr4 40988727 40988869 -143299793 + L2 LINE L2 2975 3145 -168 2173 100 3 0 chr4 40988869 40989169 -143299493 - AluY SINE Alu -10 301 1 225 194 190 110 chr4 40989169 40989263 -143299399 + L2 LINE L2 3145 3230 -83 763 232 127 6 chr4 40989805 40989986 -143298676 - MIR SINE MIR -32 230 28 972 287 100 16 chr4 40989990 40990198 -143298464 - L1ME3 LINE L1 -2 6168 5979 2275 79 0 0 chr4 40990198 40990489 -143298173 - AluSc SINE Alu -17 292 2 972 287 100 16 chr4 40990489 40990945 -143297717 - L1ME3 LINE L1 -191 5979 5477 1114 160 0 0 chr4 40990948 40991123 -143297539 - AluSg/x SINE Alu 0 312 138 1654 81 5 0 chr4 40991127 40991350 -143297312 - AluSg/x SINE Alu -2 310 87 370 138 4 0 chr4 40991350 40991413 -143297249 - Alu SINE Alu -253 49 1 378 275 127 11 chr4 40991423 40991612 -143297050 - L1ME3 LINE L1 -694 5468 5258 774 277 53 59 chr4 40991872 40992088 -143296574 - LTR33 LTR ERVL 0 521 305 2093 77 0 14 chr4 40992088 40992417 -143296245 - AluY SINE Alu 0 325 1 774 277 53 59 chr4 40992417 40992723 -143295939 - LTR33 LTR ERVL -216 305 1 2006 114 0 0 chr4 40993081 40993361 -143295301 - AluSq SINE Alu -27 286 7 261 148 123 49 chr4 40993376 40993457 -143295205 - MER5C DNA MER1_type -169 155 69 724 198 108 78 chr4 40993457 40993815 -143294847 - LTR56 LTR ERV1 0 445 100 2327 191 74 7 chr4 40993825 40994287 -143294375 - LTR22 LTR ERVK -16 493 1 511 157 35 25 chr4 40994287 40994396 -143294266 - LTR56 LTR ERV1 -318 119 1 184 339 65 0 chr4 40994397 40994459 -143294203 - MER5C DNA MER1_type -253 71 6 306 0 0 0 chr4 40994906 40994940 -143293722 + (TA)n Simple_repeat Simple_repeat 2 35 0 2153 109 3 3 chr4 40994940 40995244 -143293418 - AluSx SINE Alu -8 304 1 387 268 101 48 chr4 40995459 40995627 -143293035 + MIR SINE MIR 85 261 -1 1869 188 133 40 chr4 40995656 40995786 -143292876 + MER34 LTR ERV1 1 118 -424 2269 90 3 0 chr4 40995786 40996087 -143292575 + AluSp SINE Alu 1 302 -11 1869 188 133 40 chr4 40996087 40996452 -143292210 + MER34 LTR ERV1 118 542 0 3115 160 17 96 chr4 40996490 40996579 -143292083 - LTR8 LTR ERV1 -1 690 596 2099 110 0 7 chr4 40996579 40996879 -143291783 + AluSg1 SINE Alu 1 298 -11 3115 160 17 96 chr4 40996879 40997538 -143291124 - LTR8 LTR ERV1 -95 596 1 239 53 18 70 chr4 40998121 40998178 -143290484 + (GGGAGA)n Simple_repeat Simple_repeat 1 54 0 469 305 79 6 chr4 40998316 40998493 -143290169 - MER91A DNA MER1_type -6 190 1 4056 113 10 20 chr4 40998767 40999369 -143289293 - MER4A LTR ERV1 -4 596 1 4357 75 11 0 chr4 40999405 40999953 -143288709 - MER41A LTR ERV1 0 554 1 1322 132 0 5 chr4 41000675 41000864 -143287798 + MER4D LTR ERV1 1 188 -715 2170 108 13 3 chr4 41000913 41001219 -143287443 + AluSx SINE Alu 1 309 -3 1220 140 33 0 chr4 41001244 41001448 -143287214 + MER4D LTR ERV1 157 370 -502 703 84 53 0 chr4 41001448 41001543 -143287119 - AluJ/FLAM SINE Alu -212 100 1 2746 151 32 47 chr4 41001543 41002078 -143286584 + MER4D LTR ERV1 367 893 -10 390 305 46 15 chr4 41002283 41002414 -143286248 + L2 LINE L2 3137 3271 -1 473 285 8 23 chr4 41002492 41002622 -143286040 + MER5A DNA MER1_type 37 164 -25 1603 86 133 0 chr4 41002644 41002878 -143285784 + LTR9 LTR ERV1 1 265 -347 1824 109 3 78 chr4 41002878 41003198 -143285464 + AluSx SINE Alu 1 296 -16 1446 139 68 0 chr4 41003317 41003569 -143285093 - AluJo SINE Alu -35 277 9 447 285 13 20 chr4 41003738 41003889 -143284773 + L2 LINE L2 2837 2986 -286 347 295 29 19 chr4 41003901 41004006 -143284656 + MER5B DNA MER1_type 19 124 -54 21 0 0 0 chr4 41005646 41005667 -143282995 + AT_rich Low_complexity Low_complexity 1 21 0 529 234 7 122 chr4 41006807 41007085 -143281577 + MIR SINE MIR 5 250 -12 274 277 0 24 chr4 41008186 41008269 -143280393 + MER5B DNA MER1_type 2 82 -96 344 200 86 0 chr4 41009247 41009317 -143279345 - MER63B DNA MER1_type 0 436 361 * 893 217 22 57 chr4 41009316 41009546 -143279116 - MER63B DNA MER1_type -214 222 1 635 292 96 19 chr4 41009570 41009778 -143278884 + L1ME4a LINE L1 5571 5814 -307 1954 134 27 0 chr4 41009778 41010077 -143278585 - AluJb SINE Alu -5 307 1 635 292 96 19 chr4 41010077 41010190 -143278472 + L1ME4a LINE L1 5814 5917 -204 2544 47 0 19 chr4 41010787 41011104 -143277558 - AluY SINE Alu 0 311 1 398 253 25 101 chr4 41011105 41011303 -143277359 - MER5A DNA MER1_type -5 184 2 264 127 0 0 chr4 41011349 41011404 -143277258 + (TG)n Simple_repeat Simple_repeat 2 56 0 2095 118 3 10 chr4 41012813 41013109 -143275553 + AluSx SINE Alu 1 294 -18 2295 99 0 0 chr4 41014759 41015053 -143273609 + AluSg1 SINE Alu 1 294 -15 290 164 0 55 chr4 41015373 41015428 -143273234 - MER58 DNA MER1_type -2364 56 5 873 165 0 0 chr4 41016127 41016260 -143272402 - FLAM_C SINE Alu 0 133 1 633 189 0 39 chr4 41016522 41016649 -143272013 - L1ME3A LINE L1 0 6170 6049 2500 83 3 3 chr4 41016678 41016991 -143271671 + AluSq SINE Alu 1 313 0 1862 155 0 26 chr4 41017070 41017380 -143271282 + AluJb SINE Alu 9 310 -2 227 255 32 32 chr4 41017501 41017595 -143271067 + MIR SINE MIR 31 124 -138 297 239 0 34 chr4 41017629 41017717 -143270945 + L2 LINE L2 3188 3272 0 2199 96 7 10 chr4 41017879 41018172 -143270490 + AluSc SINE Alu 1 292 -17 2121 121 0 7 chr4 41018541 41018848 -143269814 + AluSx SINE Alu 1 305 -7 2386 93 3 0 chr4 41020968 41021268 -143267394 + AluSx SINE Alu 1 301 -11 578 280 5 31 chr4 41021291 41021484 -143267178 - MIR SINE MIR -72 190 3 1623 187 28 3 chr4 41021567 41021856 -143266806 + AluJb SINE Alu 1 296 -16 2206 126 0 0 chr4 41021866 41022160 -143266502 + AluSx SINE Alu 1 294 -18 180 0 0 0 chr4 41022163 41022183 -143266479 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 872 157 0 29 chr4 41022246 41022386 -143266276 + AluJo SINE Alu 1 136 -176 21 0 0 0 chr4 41022386 41022407 -143266255 + AT_rich Low_complexity Low_complexity 1 21 0 434 250 29 0 chr4 41022749 41022853 -143265809 - MIR SINE MIR -77 185 79 2148 117 3 3 chr4 41022979 41023286 -143265376 + AluJo SINE Alu 1 307 -5 328 344 46 7 chr4 41023744 41023895 -143264767 - MIR SINE MIR -73 189 33 459 0 0 0 chr4 41024317 41024368 -143264294 + (TG)n Simple_repeat Simple_repeat 2 52 0 2291 102 3 10 chr4 41026559 41026873 -143261789 + AluSx SINE Alu 1 312 0 232 100 0 0 chr4 41027704 41027734 -143260928 + Alu SINE Alu 259 288 -14 22 35 0 0 chr4 41027741 41027770 -143260892 + AT_rich Low_complexity Low_complexity 1 29 0 1848 152 20 7 chr4 41028314 41028616 -143260046 - AluJb SINE Alu -6 306 1 354 61 0 0 chr4 41028957 41029006 -143259656 + (TG)n Simple_repeat Simple_repeat 2 50 0 240 258 100 84 chr4 41029253 41029443 -143259219 - MLT1L LTR MaLR -226 389 197 725 209 33 0 chr4 41029658 41029811 -143258851 + MER106B DNA MER1_type 902 1059 0 1757 135 0 38 chr4 41030126 41030414 -143258248 - AluSx SINE Alu -1 311 35 229 253 36 48 chr4 41030709 41030792 -143257870 + MIR SINE MIR 110 191 -71 299 127 0 18 chr4 41032210 41032265 -143256397 + (TC)n Simple_repeat Simple_repeat 1 54 0 2169 122 3 0 chr4 41032635 41032931 -143255731 - AluSx SINE Alu -15 297 1 615 170 9 0 chr4 41033276 41033382 -143255280 - FLAM_A SINE Alu 0 142 36 202 182 0 0 chr4 41034358 41034391 -143254271 + polypyrimidine Low_complexity Low_complexity 2 34 0 2064 123 31 0 chr4 41034525 41034817 -143253845 + AluSx SINE Alu 5 305 -7 2240 122 0 0 chr4 41035061 41035372 -143253290 + AluSx SINE Alu 1 311 -1 225 280 189 8 chr4 41036250 41036382 -143252280 - L1ME4a LINE L1 -1 6120 5965 393 304 95 6 chr4 41037569 41037737 -143250925 - MIR3 SINE MIR -3 205 23 24 32 0 0 chr4 41037802 41037833 -143250829 + AT_rich Low_complexity Low_complexity 1 31 0 2423 87 3 0 chr4 41038004 41038304 -143250358 + AluSx SINE Alu 1 301 -11 239 277 24 24 chr4 41038568 41038651 -143250011 - L2 LINE L2 -222 3050 2968 21 0 0 0 chr4 41039481 41039502 -143249160 + AT_rich Low_complexity Low_complexity 1 21 0 15158 122 24 24 chr4 41040211 41042348 -143246314 + Tigger1 DNA MER2_type 24 2160 -258 840 161 129 0 chr4 41042348 41042503 -143246159 - FAM SINE Alu 0 175 1 15158 122 24 24 chr4 41042503 41042642 -143246020 + Tigger1 DNA MER2_type 2160 2303 -115 2468 82 3 0 chr4 41042642 41042946 -143245716 - AluSp SINE Alu -8 305 1 15158 122 24 24 chr4 41042946 41043063 -143245599 + Tigger1 DNA MER2_type 2302 2418 0 445 311 49 29 chr4 41043100 41043344 -143245318 - L1MC4a LINE L1 -1983 5825 5577 643 233 39 0 chr4 41043351 41043480 -143245182 + MER97a DNA MER1_type? 13 146 -748 1233 216 64 20 chr4 41043489 41043785 -143244877 + MER97c DNA MER1_type? 389 697 -393 1035 172 6 0 chr4 41043795 41043952 -143244710 - AluJb SINE Alu -23 289 132 1404 173 116 7 chr4 41043983 41044260 -143244402 - AluSx SINE Alu -5 307 1 493 209 47 34 chr4 41044300 41044448 -143244214 + MER97a DNA MER1_type? 745 894 0 736 266 10 14 chr4 41044719 41044926 -143243736 + MIR SINE MIR 26 231 -31 182 328 0 0 chr4 41045055 41045113 -143243549 - MIR SINE MIR -154 108 51 2521 84 3 0 chr4 41045121 41045431 -143243231 + AluSp SINE Alu 3 313 0 2218 109 26 0 chr4 41045751 41046055 -143242607 + AluSx SINE Alu 1 312 0 240 254 0 30 chr4 41046338 41046405 -143242257 + MIR3 SINE MIR 107 171 -37 2029 139 7 0 chr4 41046844 41047166 -143241496 + AluSx SINE Alu 1 324 0 347 267 0 0 chr4 41047315 41047390 -143241272 - MIR SINE MIR -180 82 8 2484 40 27 0 chr4 41047390 41047687 -143240975 + AluY SINE Alu 1 305 -6 2021 156 24 9 chr4 41047851 41048185 -143240477 + MER2 DNA MER2_type 1 339 -6 778 239 61 57 chr4 41048315 41048354 -143240308 - Charlie8 DNA MER1_type -93 248 211 1733 169 45 10 chr4 41048354 41048520 -143240142 - AluJo SINE Alu -12 300 118 183 42 0 0 chr4 41048520 41048544 -143240118 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1733 169 45 10 chr4 41048544 41048667 -143239995 - AluJo SINE Alu -194 118 1 778 239 61 57 chr4 41048667 41048713 -143239949 - Charlie8 DNA MER1_type -130 211 167 1785 234 64 36 chr4 41048713 41049247 -143239415 - MLT1H LTR MaLR 0 549 1 778 239 61 57 chr4 41049247 41049407 -143239255 - Charlie8 DNA MER1_type -174 167 1 202 313 188 0 chr4 41049482 41049594 -143239068 - L2 LINE L2 -1 3271 3139 2334 113 33 30 chr4 41049744 41050107 -143238555 + THE1B LTR MaLR 1 364 0 1930 152 41 0 chr4 41050414 41050704 -143237958 - AluSq SINE Alu -11 302 1 204 40 0 0 chr4 41050816 41050841 -143237821 + (CA)n Simple_repeat Simple_repeat 1 25 0 1932 136 35 32 chr4 41050914 41051224 -143237438 - AluJo SINE Alu -1 311 1 2201 104 0 0 chr4 41051858 41052146 -143236516 - AluSc SINE Alu -21 288 1 784 184 35 0 chr4 41052580 41052721 -143235941 + FAM SINE Alu 22 167 -18 224 326 22 0 chr4 41052758 41052850 -143235812 + MIR SINE MIR 132 225 -37 2284 107 10 3 chr4 41053260 41053569 -143235093 + AluSx SINE Alu 1 311 -1 1592 180 20 36 chr4 41054209 41054515 -143234147 + AluJb SINE Alu 12 312 0 302 335 138 13 chr4 41054537 41054689 -143233973 + MIR SINE MIR 17 187 -75 2087 114 137 22 chr4 41054943 41054984 -143233678 - MSTA LTR MaLR 0 428 393 2359 91 0 26 chr4 41054984 41055292 -143233370 + AluSg SINE Alu 1 300 -10 2087 114 137 22 chr4 41055292 41055609 -143233053 - MSTA LTR MaLR -35 393 29 2171 125 0 7 chr4 41255952 41256256 -143032406 - AluSx SINE Alu -10 302 1 266 289 58 16 chr4 41256327 41256448 -143032214 + MIR SINE MIR 22 147 -61 247 238 56 63 chr4 41256495 41256621 -143032041 + L2 LINE L2 2585 2709 -605 1920 105 19 0 chr4 41256629 41256887 -143031775 + AluSx SINE Alu 1 263 -49 2569 69 0 0 chr4 41257574 41257878 -143030784 + AluY SINE Alu 1 304 -7 936 232 33 25 chr4 41257897 41258138 -143030524 - MLT1L LTR MaLR -328 287 45 1967 153 3 0 chr4 41258532 41258833 -143029829 + AluSx SINE Alu 1 302 -10 903 119 0 8 chr4 41259026 41259160 -143029502 - FLAM_A SINE Alu 0 133 1 665 166 136 18 chr4 41259534 41259703 -143028959 + MER5A DNA MER1_type 1 189 0 844 267 22 13 chr4 41259703 41259935 -143028727 + MIR SINE MIR 17 250 -12 26 30 0 0 chr4 41260277 41260310 -143028352 + AT_rich Low_complexity Low_complexity 1 33 0 1743 112 14 41 chr4 41260324 41260569 -143028093 + L1MB3 LINE L1 5895 6132 -51 2107 138 0 0 chr4 41260569 41260859 -143027803 + AluSx SINE Alu 1 290 -22 1743 112 14 41 chr4 41260859 41260908 -143027754 + L1MB3 LINE L1 6132 6181 -2 360 246 97 30 chr4 41260995 41261129 -143027533 + L1ME3A LINE L1 6027 6169 -1 1123 240 72 26 chr4 41261314 41261618 -143027044 - MLT1F1 LTR MaLR -2 565 248 829 236 121 73 chr4 41261618 41261691 -143026971 + L2 LINE L2 2634 2702 -611 1808 147 73 50 chr4 41261691 41261815 -143026847 + MLT1B LTR MaLR 1 121 -269 2031 107 13 44 chr4 41261815 41262132 -143026530 + AluSx SINE Alu 1 307 -5 1808 147 73 50 chr4 41262132 41262388 -143026274 + MLT1B LTR MaLR 121 390 0 829 236 121 73 chr4 41262388 41262580 -143026082 + L2 LINE L2 2702 2883 -430 2941 131 33 2 chr4 41262580 41263031 -143025631 + MER4C LTR ERV1 1 465 0 829 236 121 73 chr4 41263031 41263210 -143025452 + L2 LINE L2 2883 3052 -261 1508 116 31 18 chr4 41263210 41263434 -143025228 - AluJb SINE Alu -2 310 84 829 236 121 73 chr4 41263434 41263608 -143025054 + L2 LINE L2 3052 3280 -33 714 179 114 0 chr4 41263615 41263755 -143024907 + MLT1B LTR MaLR 235 390 0 213 219 41 14 chr4 41263755 41263828 -143024834 + L2 LINE L2 2712 2786 -528 1518 158 82 14 chr4 41264000 41264279 -143024383 + AluJo SINE Alu 1 298 -14 21 0 0 0 chr4 41264443 41264464 -143024198 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr4 41264654 41264674 -143023988 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 365 136 17 0 chr4 41264689 41264748 -143023914 - U7 snRNA snRNA -1 62 3 198 256 64 13 chr4 41265033 41265111 -143023551 - MIR SINE MIR -128 134 53 520 273 54 69 chr4 41265441 41265761 -143022901 + L2 LINE L2 2985 3301 -12 2292 102 0 0 chr4 41265761 41266055 -143022607 + AluSq SINE Alu 1 294 -19 520 273 54 69 chr4 41266055 41266068 -143022594 + L2 LINE L2 3301 3313 0 363 279 123 41 chr4 41266829 41267048 -143021614 + MIR SINE MIR 18 254 -8 23463 135 11 20 chr4 41267151 41268392 -143020270 + L1M1 LINE L1 24 1275 -6290 2395 103 0 0 chr4 41268392 41268703 -143019959 + AluSx SINE Alu 1 311 -1 23463 135 11 20 chr4 41268703 41270275 -143018387 + L1M1 LINE L1 1275 2860 -4705 2214 133 3 0 chr4 41270275 41270584 -143018078 + AluSx SINE Alu 1 310 -2 23463 135 11 20 chr4 41270584 41271181 -143017481 + L1M1 LINE L1 2860 3402 -4163 2343 110 3 0 chr4 41271181 41271490 -143017172 + AluSq SINE Alu 1 310 -3 23463 135 11 20 chr4 41271490 41272107 -143016555 + L1M1 LINE L1 3402 4023 -3542 2384 90 3 0 chr4 41272111 41272410 -143016252 + AluY SINE Alu 1 300 -11 2009 101 67 24 chr4 41272410 41272738 -143015924 + L1MA3 LINE L1 5941 6282 -23 882 103 0 22 chr4 41272909 41273045 -143015617 + FLAM_C SINE Alu 1 133 0 287 252 153 9 chr4 41273600 41273711 -143014951 - L2 LINE L2 -2 3270 3144 2371 109 0 0 chr4 41273731 41274035 -143014627 + AluSx SINE Alu 1 304 -8 191 317 125 0 chr4 41274547 41274667 -143013995 + L2 LINE L2 3179 3313 0 2222 121 10 0 chr4 41274676 41274982 -143013680 - AluSg SINE Alu -1 309 1 21 0 0 0 chr4 41275680 41275701 -143012961 + AT_rich Low_complexity Low_complexity 1 21 0 785 251 20 20 chr4 41275878 41276073 -143012589 + MER58A DNA MER1_type 30 224 0 509 284 58 36 chr4 41276073 41276298 -143012364 + MIR SINE MIR 31 260 -2 29 0 0 0 chr4 41276306 41276335 -143012327 + AT_rich Low_complexity Low_complexity 1 29 0 1932 123 7 7 chr4 41276339 41276616 -143012046 - AluSx SINE Alu -10 302 26 481 278 114 13 chr4 41277142 41277324 -143011338 + MIR SINE MIR 13 224 -38 1810 162 43 13 chr4 41277324 41277627 -143011035 + AluJb SINE Alu 1 312 0 481 278 114 13 chr4 41277627 41277671 -143010991 + MIR SINE MIR 224 262 0 1885 106 15 103 chr4 41278403 41278743 -143009919 - AluJb SINE Alu -2 310 1 1728 170 35 0 chr4 41278916 41279204 -143009458 - AluJb SINE Alu -14 298 1 22 35 0 0 chr4 41279211 41279240 -143009422 + AT_rich Low_complexity Low_complexity 1 29 0 2045 189 13 57 chr4 41279240 41279712 -143008950 + L1MB5 LINE L1 5724 6174 0 920 139 0 7 chr4 41279718 41279855 -143008807 + AluJo SINE Alu 1 136 -176 270 0 0 0 chr4 41279995 41280025 -143008637 + (A)n Simple_repeat Simple_repeat 1 30 0 525 144 0 0 chr4 41280451 41280541 -143008121 + L1MA5A LINE L1 6206 6295 -2 2392 89 7 0 chr4 41280613 41280915 -143007747 + AluSp SINE Alu 1 304 -9 215 30 0 30 chr4 41281014 41281047 -143007615 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1686 146 91 0 chr4 41281256 41281531 -143007131 + AluJo SINE Alu 1 300 -12 2312 100 3 6 chr4 41281705 41282016 -143006646 + AluSq SINE Alu 2 311 -2 192 77 0 0 chr4 41282530 41282556 -143006106 + (TCTCCC)n Simple_repeat Simple_repeat 1 26 0 1049 194 5 5 chr4 41282752 41282943 -143005719 - AluJ SINE Alu -9 303 113 817 131 16 0 chr4 41282953 41283075 -143005587 - AluJ SINE Alu -177 135 12 400 225 26 113 chr4 41283157 41283308 -143005354 + L2 LINE L2 3172 3309 -4 2148 121 10 13 chr4 41283761 41284067 -143004595 + AluSx SINE Alu 1 305 -7 187 293 61 10 chr4 41284706 41284805 -143003857 + MIR SINE MIR 80 183 -79 1365 158 73 12 chr4 41285051 41285297 -143003365 + AluJo SINE Alu 16 276 -36 1674 77 0 5 chr4 41285297 41285505 -143003157 - AluSg/x SINE Alu -9 301 95 1769 129 8 0 chr4 41285605 41285846 -143002816 - AluSg SINE Alu -67 243 1 351 175 0 0 chr4 41285861 41285918 -143002744 + MER3 DNA MER1_type 153 209 0 282 232 0 0 chr4 41285875 41285931 -143002731 - MER3 DNA MER1_type -119 90 35 * 401 270 19 116 chr4 41285941 41286064 -143002598 - MER117 DNA MER1_type -3 194 99 1578 181 7 4 chr4 41286064 41286341 -143002321 + AluJb SINE Alu 1 278 -34 401 270 19 116 chr4 41286341 41286432 -143002230 - MER117 DNA MER1_type -98 99 1 2356 107 0 0 chr4 41287248 41287556 -143001106 - AluY SINE Alu -2 309 2 2451 83 3 3 chr4 41287557 41287858 -143000804 - AluSc SINE Alu -8 301 1 240 222 0 0 chr4 41287873 41287927 -143000735 + T-rich Low_complexity Low_complexity 1 54 0 1806 173 0 10 chr4 41288399 41288699 -142999963 + AluSx SINE Alu 1 297 -15 975 146 11 54 chr4 41288699 41288884 -142999778 + AluSg/x SINE Alu 132 308 -2 410 200 35 0 chr4 41289108 41289193 -142999469 + MER58C DNA MER1_type 36 123 -92 1228 157 22 26 chr4 41289202 41289431 -142999231 + AluJb SINE Alu 85 312 0 357 200 130 0 chr4 41289433 41289533 -142999129 + MER58C DNA MER1_type 103 215 0 1351 135 4 82 chr4 41290589 41290833 -142997829 - AluSx SINE Alu -87 225 1 802 100 0 0 chr4 41291200 41291300 -142997362 + AluJb SINE Alu 133 232 -80 471 283 142 30 chr4 41291601 41291834 -142996828 + MIR SINE MIR 2 260 -2 808 190 46 0 chr4 41291912 41292086 -142996576 - MER53 DNA DNA -7 182 1 1459 151 4 54 chr4 41292099 41292323 -142996339 - AluJb SINE Alu -4 308 97 2275 111 0 0 chr4 41292323 41292620 -142996042 - AluSq SINE Alu -16 297 1 1459 151 4 54 chr4 41292620 41292653 -142996009 - AluJb SINE Alu -215 97 64 378 292 35 77 chr4 41292765 41293072 -142995590 + L2 LINE L2 2761 3058 -255 1380 77 0 0 chr4 41293072 41293242 -142995420 - AluSg/x SINE Alu -3 309 140 2123 117 3 0 chr4 41293404 41293710 -142994952 - AluSx SINE Alu 0 307 1 353 258 100 8 chr4 41293742 41293862 -142994800 + L2 LINE L2 3137 3267 -5 224 271 0 0 chr4 41294182 41294241 -142994421 + L2 LINE L2 3191 3249 -23 180 77 0 0 chr4 41294519 41294545 -142994117 + (A)n Simple_repeat Simple_repeat 1 26 0 202 154 0 39 chr4 41294836 41294888 -142993774 + CT-rich Low_complexity Low_complexity 1 50 0 1773 148 48 14 chr4 41294888 41295042 -142993620 - AluSx SINE Alu -12 300 153 2271 89 16 3 chr4 41295042 41295345 -142993317 - AluSq SINE Alu -6 307 1 1773 148 48 14 chr4 41295345 41295480 -142993182 - AluSx SINE Alu -159 153 1 662 288 34 5 chr4 41295499 41295704 -142992958 + MER46C DNA MER2_type 115 325 -13 284 263 25 0 chr4 41295729 41295809 -142992853 - MIR SINE MIR -157 105 24 273 71 0 0 chr4 41296148 41296190 -142992472 - Alu SINE Alu -1 307 266 2570 53 0 3 chr4 41296533 41296836 -142991826 + AluY SINE Alu 1 302 -9 400 306 21 72 chr4 41296849 41297084 -142991578 + MIR SINE MIR 40 262 0 192 271 0 0 chr4 41297094 41297142 -142991520 + MIR3 SINE MIR 161 208 0 2298 74 3 59 chr4 41297248 41297427 -142991235 - AluSx SINE Alu -7 305 150 2229 106 3 6 chr4 41297427 41297738 -142990924 - AluSg SINE Alu 0 310 1 2298 74 3 59 chr4 41297738 41297881 -142990781 - AluSx SINE Alu -162 150 1 1678 123 15 22 chr4 41298598 41298867 -142989795 - AluSx SINE Alu -2 310 44 1374 157 13 17 chr4 41298982 41299158 -142989504 - AluJo SINE Alu -2 310 134 1514 150 91 15 chr4 41299158 41299432 -142989230 - AluJb SINE Alu -17 295 1 1374 157 13 17 chr4 41299432 41299491 -142989171 - AluJo SINE Alu -178 134 76 1003 151 0 70 chr4 41299706 41299892 -142988770 - FRAM SINE Alu -5 171 1 2385 95 0 0 chr4 41300209 41300503 -142988159 - AluSc SINE Alu -13 296 3 1853 149 14 11 chr4 41300508 41300816 -142987846 - AluSx SINE Alu 0 309 1 201 121 0 0 chr4 41301071 41301104 -142987558 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 2214 78 7 20 chr4 41301287 41301583 -142987079 + AluSx SINE Alu 1 292 -20 1754 148 55 0 chr4 41301584 41301855 -142986807 + AluJb SINE Alu 1 286 -26 671 241 75 30 chr4 41302703 41302902 -142985760 + MER3 DNA MER1_type 1 208 -1 1843 172 0 7 chr4 41303818 41304109 -142984553 + AluJb SINE Alu 2 290 -22 752 154 0 70 chr4 41304112 41304255 -142984407 + AluJo SINE Alu 1 133 -169 315 164 0 0 chr4 41305001 41305062 -142983600 + (CA)n Simple_repeat Simple_repeat 2 62 0 906 117 0 29 chr4 41305145 41305282 -142983380 + AluJo SINE Alu 1 133 -169 2203 122 0 10 chr4 41305537 41305848 -142982814 - AluSx SINE Alu -4 308 1 961 201 6 0 chr4 41306296 41306460 -142982202 + AluJo SINE Alu 133 297 -15 1941 127 53 23 chr4 41306462 41306762 -142981900 + AluSx SINE Alu 1 309 -3 1969 120 17 21 chr4 41306861 41307141 -142981521 + AluSg SINE Alu 1 301 -9 267 0 29 0 chr4 41307141 41307175 -142981487 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 965 132 0 0 chr4 41308109 41308238 -142980424 + AluSq/x SINE Alu 1 129 -184 242 0 0 0 chr4 41308244 41308273 -142980389 - Alu SINE Alu -33 268 240 961 97 0 0 chr4 41308373 41308497 -142980165 + Alu SINE Alu 176 299 -12 453 256 78 96 chr4 41308535 41308805 -142979857 - L2 LINE L2 -3 3269 3005 2028 125 10 14 chr4 41309017 41309313 -142979349 - AluSq SINE Alu -17 296 2 578 327 67 7 chr4 41309321 41309621 -142979041 - L2 LINE L2 -573 2741 2424 853 244 5 10 chr4 41309656 41309857 -142978805 - MIR SINE MIR -43 219 20 2377 108 0 13 chr4 41309871 41310187 -142978475 - AluSx SINE Alu 0 312 1 259 285 24 85 chr4 41310214 41310379 -142978283 - L2 LINE L2 -890 2424 2270 342 96 0 0 chr4 41311411 41311463 -142977199 + MADE1 DNA Mariner 1 52 -28 781 219 12 0 chr4 41311550 41311719 -142976943 - MIR SINE MIR -43 219 49 294 114 0 0 chr4 41311719 41311763 -142976899 + MADE1 DNA Mariner 37 80 0 868 189 23 23 chr4 41312641 41312836 -142975826 + AluJo SINE Alu 108 302 0 1068 175 0 0 chr4 41312902 41313079 -142975583 + AluJb SINE Alu 131 307 -5 431 153 0 12 chr4 41313079 41313164 -142975498 + GA-rich Low_complexity Low_complexity 1 84 0 336 111 0 0 chr4 41313593 41313647 -142975015 + (GGGGA)n Simple_repeat Simple_repeat 4 57 0 482 225 25 67 chr4 41313647 41313826 -142974836 + L1ME LINE L1 5501 5673 -448 2284 91 3 0 chr4 41313952 41314258 -142974404 - AluSp SINE Alu 0 307 1 2299 106 0 3 chr4 41314277 41314578 -142974084 - AluSx SINE Alu -12 300 1 1836 167 10 16 chr4 41314694 41315006 -142973656 - AluJb SINE Alu -2 310 1 1625 162 27 3 chr4 41315031 41315328 -142973334 + L1MC1 LINE L1 6022 6325 -8 1995 146 0 3 chr4 41315328 41315615 -142973047 + AluSx SINE Alu 3 288 -24 668 97 0 0 chr4 41315617 41315710 -142972952 + AluSg/x SINE Alu 204 296 -13 1153 251 104 28 chr4 41315817 41316248 -142972414 - L2 LINE L2 0 3313 2850 381 326 0 30 chr4 41316317 41316449 -142972213 + MIR SINE MIR 16 143 -65 1629 104 9 0 chr4 41317179 41317399 -142971263 + AluSg/x SINE Alu 83 304 -6 327 257 153 42 chr4 41317499 41317760 -142970902 + L1M4 LINE L1 2213 2502 -3644 393 365 24 10 chr4 41317820 41318028 -142970634 + MIR SINE MIR 40 250 -12 393 194 81 100 chr4 41318299 41318459 -142970203 + LTR41 LTR ERVL 1 157 -616 2182 133 0 0 chr4 41318588 41318882 -142969780 - AluSx SINE Alu -18 294 1 389 224 44 78 chr4 41319025 41319230 -142969432 + LTR41 LTR ERVL 563 760 -13 2352 99 0 7 chr4 41319861 41320165 -142968497 + AluSx SINE Alu 1 302 -10 252 250 42 10 chr4 41320364 41320460 -142968202 + L1MC4a LINE L1 5973 6071 -1737 423 274 164 14 chr4 41320487 41320695 -142967967 + MIR SINE MIR 20 258 -4 2130 147 0 0 chr4 41320749 41321055 -142967607 + AluJb SINE Alu 1 306 -6 2034 115 48 0 chr4 41321228 41321523 -142967139 + AluSx SINE Alu 1 309 -3 2091 124 0 47 chr4 41321661 41321983 -142966679 + AluSq SINE Alu 1 307 -6 220 163 0 20 chr4 41322335 41322384 -142966278 + MIR SINE MIR 65 112 -150 2299 98 13 3 chr4 41322491 41322798 -142965864 - AluSq SINE Alu -3 310 1 1969 80 4 0 chr4 41324494 41324771 -142963891 - AluY SINE Alu 0 311 34 1097 83 0 0 chr4 41324780 41324913 -142963749 - AluSq/x SINE Alu -179 133 1 1693 174 6 29 chr4 41325002 41325313 -142963349 - AluSx SINE Alu 0 312 9 1903 150 24 3 chr4 41325377 41325671 -142962991 - AluJb SINE Alu -12 300 1 303 336 0 0 chr4 41325706 41325816 -142962846 - MIR SINE MIR 0 262 153 2150 110 10 10 chr4 41326300 41326610 -142962052 - AluSg SINE Alu 0 310 1 1096 64 0 83 chr4 41326859 41327015 -142961647 + AluSp SINE Alu 152 294 -19 1692 142 125 40 chr4 41328374 41328508 -142960154 + MLT1B LTR MaLR 6 127 -263 1901 141 0 11 chr4 41328508 41328828 -142959834 + AluJb SINE Alu 1 317 0 1692 142 125 40 chr4 41328828 41329045 -142959617 + MLT1B LTR MaLR 127 388 -2 947 119 77 0 chr4 41329120 41329263 -142959399 + AluJb SINE Alu 89 242 -70 338 216 26 9 chr4 41329652 41329768 -142958894 + (TA)n Simple_repeat Simple_repeat 2 119 0 231 280 0 32 chr4 41329778 41329871 -142958791 - L1MC4 LINE L1 -1339 6703 6614 256 147 0 59 chr4 41329871 41329939 -142958723 + (TATATG)n Simple_repeat Simple_repeat 4 67 0 1717 148 0 86 chr4 41329963 41330301 -142958361 - AluSx SINE Alu -1 311 3 447 197 33 16 chr4 41331081 41331205 -142957457 - MIR3 SINE MIR -3 205 75 332 299 84 7 chr4 41331223 41331377 -142957285 - MIR SINE MIR -8 254 89 2360 100 0 22 chr4 41331424 41331744 -142956918 - AluSq SINE Alu 0 313 1 273 239 219 7 chr4 41332807 41332962 -142955700 - MIR SINE MIR -55 207 20 506 221 6 76 chr4 41333012 41333184 -142955478 - MER63 DNA MER1_type -9 1052 893 350 70 0 0 chr4 41333180 41333223 -142955439 + THE1A LTR MaLR 313 355 0 * 11713 83 20 10 chr4 41333223 41333646 -142955016 + THE1B-int LTR MaLR 1 418 -1162 2259 112 3 3 chr4 41333646 41333949 -142954713 - AluSq SINE Alu -10 303 1 11713 83 20 10 chr4 41333949 41335089 -142953573 + THE1B-int LTR MaLR 418 1580 0 2320 107 48 20 chr4 41335089 41335443 -142953219 + THE1B LTR MaLR 1 364 0 3044 171 34 109 chr4 41335731 41335869 -142952793 + L1M4 LINE L1 4312 4459 -1687 853 160 0 0 chr4 41335869 41336000 -142952662 + FLAM_C SINE Alu 3 133 0 3044 171 34 109 chr4 41336000 41336322 -142952340 + L1M4 LINE L1 4459 4678 -1468 2232 105 0 3 chr4 41336322 41336649 -142952013 - AluSp SINE Alu 0 326 1 3044 171 34 109 chr4 41336649 41337068 -142951594 + L1M4 LINE L1 4678 5127 -1019 1924 151 0 29 chr4 41337068 41337380 -142951282 + AluJb SINE Alu 1 303 -9 2192 111 3 10 chr4 41338073 41338370 -142950292 - AluSq SINE Alu -18 295 1 645 81 18 18 chr4 41338898 41339009 -142949653 + (TTTC)n Simple_repeat Simple_repeat 2 112 0 790 154 29 15 chr4 41341664 41341800 -142946862 + MER2 DNA MER2_type 1 138 -207 674 129 0 10 chr4 41341804 41341905 -142946757 - FLAM_C SINE Alu -15 128 29 598 218 165 11 chr4 41341905 41342093 -142946569 + MER2 DNA MER2_type 124 340 -5 216 368 37 15 chr4 41342485 41342621 -142946041 - L2 LINE L2 -182 3090 2952 233 153 14 42 chr4 41343089 41343161 -142945501 + (TAA)n Simple_repeat Simple_repeat 3 72 0 1773 168 0 11 chr4 41343167 41343499 -142945163 + AluJo SINE Alu 1 329 0 294 286 150 0 chr4 41343509 41343642 -142945020 - MIR SINE MIR -37 225 73 226 175 0 0 chr4 41344130 41344170 -142944492 + MIR SINE MIR 106 145 -63 2917 152 52 4 chr4 41344189 41344671 -142943991 + Tigger7 DNA MER2_type 22 526 -1961 557 94 19 94 chr4 41344647 41344753 -142943909 + Tigger7 DNA MER2_type 2387 2484 -3 * 983 79 0 0 chr4 41344856 41344982 -142943680 + AluSg/x SINE Alu 187 312 0 2186 81 3 7 chr4 41345181 41345525 -142943137 + AluY SINE Alu 1 343 0 269 380 8 8 chr4 41345943 41346072 -142942590 + MER5B DNA MER1_type 5 133 -45 1706 153 60 0 chr4 41346085 41346367 -142942295 + AluJo SINE Alu 14 312 0 2604 55 0 0 chr4 41346644 41346952 -142941710 + AluY SINE Alu 1 308 -3 1682 141 43 16 chr4 41347211 41347467 -142941195 - AluSq SINE Alu -50 263 1 614 167 0 42 chr4 41347592 41347712 -142940950 + FLAM_C SINE Alu 29 143 0 234 160 0 0 chr4 41348976 41349026 -142939636 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 1099 137 0 28 chr4 41349151 41349333 -142939329 + FRAM SINE Alu 1 176 0 1924 112 3 70 chr4 41349464 41349795 -142938867 - AluSp SINE Alu -4 309 1 192 77 0 0 chr4 41349954 41349980 -142938682 + (T)n Simple_repeat Simple_repeat 1 26 0 369 286 105 0 chr4 41350162 41350267 -142938395 + MIR SINE MIR 33 148 -114 857 121 0 0 chr4 41350269 41350385 -142938277 + AluSg/x SINE Alu 138 253 -59 1872 124 0 4 chr4 41350385 41350650 -142938012 + AluSx SINE Alu 41 304 -8 2291 95 0 23 chr4 41351387 41351692 -142936970 + AluSq SINE Alu 1 298 -15 1814 208 30 1 chr4 41352498 41352927 -142935735 + L1M3 LINE L1 4946 5384 -747 1573 166 15 25 chr4 41352973 41353322 -142935340 + L1M3 LINE L1 5353 5698 -476 269 236 46 52 chr4 41353623 41353763 -142934899 - L1MC4 LINE L1 -1 8041 7790 1618 108 5 0 chr4 41353776 41353998 -142934664 - AluSp SINE Alu -5 308 86 1821 112 93 0 chr4 41354153 41354431 -142934231 - AluSx SINE Alu -8 304 1 261 0 0 0 chr4 41354766 41354795 -142933867 + (TA)n Simple_repeat Simple_repeat 1 29 0 1672 172 0 56 chr4 41354855 41355158 -142933504 - AluJo SINE Alu -26 286 1 42 0 0 0 chr4 41355205 41355247 -142933415 + AT_rich Low_complexity Low_complexity 1 42 0 1561 139 98 8 chr4 41355247 41355513 -142933149 - AluJo SINE Alu -22 290 1 346 266 42 100 chr4 41355658 41355780 -142932882 + MIR SINE MIR 12 115 -147 2417 99 0 3 chr4 41355780 41356092 -142932570 - AluSq SINE Alu 0 313 3 346 266 42 100 chr4 41356092 41356210 -142932452 + MIR SINE MIR 115 238 -24 203 167 42 198 chr4 41356376 41356472 -142932190 - MER5B DNA MER1_type -6 172 92 315 0 0 0 chr4 41356487 41356522 -142932140 + (TG)n Simple_repeat Simple_repeat 2 36 0 2024 145 17 0 chr4 41357231 41357527 -142931135 - AluSq SINE Alu -12 301 1 269 206 39 0 chr4 41357688 41357745 -142930917 - MLT1K LTR MaLR -2 613 529 912 137 0 8 chr4 41357746 41357877 -142930785 + FLAM_A SINE Alu 1 130 -3 23 0 0 0 chr4 41358879 41358902 -142929760 + AT_rich Low_complexity Low_complexity 1 23 0 1156 127 0 0 chr4 41358904 41359062 -142929600 - AluSg/x SINE Alu -21 291 134 2105 97 42 0 chr4 41359062 41359350 -142929312 - AluSx SINE Alu -12 300 1 183 267 133 0 chr4 41359407 41359482 -142929180 - MIR SINE MIR -11 251 167 * 201 327 60 80 chr4 41359471 41359670 -142928992 + L2 LINE L2 3028 3222 -50 189 0 0 0 chr4 41360055 41360076 -142928586 + (CA)n Simple_repeat Simple_repeat 2 22 0 2024 132 23 3 chr4 41360462 41360765 -142927897 - AluJb SINE Alu -3 309 1 2281 222 23 57 chr4 41361153 41362080 -142926582 - L1 LINE L1 -790 5356 4497 1020 80 173 0 chr4 41362083 41362245 -142926417 - AluSc SINE Alu -7 302 113 3991 230 85 24 chr4 41362254 41363610 -142925052 - L1 LINE L1 -1656 4490 3052 775 257 55 47 chr4 41363805 41364058 -142924604 + MIR SINE MIR 5 259 -3 1954 108 26 52 chr4 41364507 41364812 -142923850 - AluSx SINE Alu -15 297 1 1966 137 20 7 chr4 41365260 41365560 -142923102 + AluSx SINE Alu 1 304 -8 822 134 9 0 chr4 41366222 41366334 -142922328 - AluSq/x SINE Alu -198 114 2 1649 183 3 36 chr4 41366754 41367060 -142921602 - AluJb SINE Alu -16 296 1 195 114 0 0 chr4 41367807 41367842 -142920820 + (A)n Simple_repeat Simple_repeat 1 35 0 234 177 0 97 chr4 41368600 41368662 -142920000 - L1ME4a LINE L1 -84 6037 5982 406 282 126 10 chr4 41368801 41369007 -142919655 - L1ME4a LINE L1 -334 5787 5558 258 32 0 0 chr4 41369098 41369129 -142919533 + (TATTG)n Simple_repeat Simple_repeat 2 32 0 1111 133 0 0 chr4 41369129 41369287 -142919375 - AluSg/x SINE Alu -19 291 134 212 294 87 0 chr4 41369468 41369560 -142919102 + L2 LINE L2 3214 3313 0 2017 143 3 7 chr4 41370283 41370591 -142918071 + AluSx SINE Alu 1 307 -5 959 112 0 8 chr4 41370850 41370984 -142917678 + AluSx SINE Alu 1 133 -180 2217 116 7 0 chr4 41370984 41371277 -142917385 + AluSx SINE Alu 1 295 -17 369 58 0 0 chr4 41371335 41371387 -142917275 + (TAA)n Simple_repeat Simple_repeat 2 53 0 1254 130 0 0 chr4 41371387 41371564 -142917098 + AluSx SINE Alu 126 302 -8 716 250 54 67 chr4 41372432 41372556 -142916106 + MIR SINE MIR 21 142 -120 2258 119 3 0 chr4 41372556 41372858 -142915804 + AluSq SINE Alu 1 303 -10 716 250 54 67 chr4 41372858 41372957 -142915705 + MIR SINE MIR 142 241 -21 758 171 16 0 chr4 41373035 41373158 -142915504 + FLAM_A SINE Alu 2 126 -7 1633 182 33 4 chr4 41373198 41373514 -142915148 - AluJb SINE Alu 0 324 1 782 183 24 0 chr4 41374049 41374175 -142914487 + FLAM_C SINE Alu 1 129 -4 2530 71 3 0 chr4 41374520 41374828 -142913834 + AluSp SINE Alu 1 309 -4 1181 104 0 0 chr4 41375632 41375796 -142912866 - AluSx SINE Alu -10 300 137 643 95 0 0 chr4 41375797 41375881 -142912781 - AluSx SINE Alu -227 85 2 428 243 29 10 chr4 41376582 41376685 -142911977 - MIR SINE MIR -10 252 148 650 340 14 5 chr4 41379491 41379706 -142908956 + MIR SINE MIR 46 262 0 2068 115 49 3 chr4 41380253 41380541 -142908121 - AluSq SINE Alu -11 302 2 390 197 13 0 chr4 41380759 41380835 -142907827 + MER116 DNA Mariner 3 79 -1 254 358 53 7 chr4 41380965 41381116 -142907546 - L2 LINE L2 -437 2877 2720 536 104 13 0 chr4 41381126 41381203 -142907459 - AluSp/q SINE Alu -15 298 221 216 0 0 0 chr4 41381404 41381428 -142907234 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 294 159 0 0 chr4 41381429 41381473 -142907189 - L2 LINE L2 -14 3258 3215 402 302 22 14 chr4 41381930 41382069 -142906593 + MIR SINE MIR 7 146 -116 736 246 92 10 chr4 41382072 41382279 -142906383 - MIR SINE MIR -2 260 37 323 264 46 0 chr4 41382283 41382370 -142906292 + MIR SINE MIR 164 254 -8 2084 157 0 3 chr4 41382390 41382703 -142905959 + AluJo SINE Alu 1 312 0 2052 90 0 36 chr4 41383543 41383663 -142904999 + AluSg1 SINE Alu 13 136 -166 2521 71 0 3 chr4 41383663 41383974 -142904688 + AluY SINE Alu 1 310 -1 2052 90 0 36 chr4 41383974 41384153 -142904509 + AluSg1 SINE Alu 136 302 0 300 83 0 0 chr4 41384201 41384249 -142904413 + (TG)n Simple_repeat Simple_repeat 2 49 0 471 269 85 0 chr4 41384516 41384646 -142904016 + MIR SINE MIR 19 159 -103 2023 129 0 10 chr4 41385621 41385916 -142902746 - AluSx SINE Alu -20 292 1 2160 113 3 26 chr4 41386246 41386556 -142902106 + AluSx SINE Alu 1 303 -9 716 250 54 67 chr4 41387425 41387549 -142901113 + MIR SINE MIR 21 142 -120 2249 120 3 0 chr4 41387549 41387850 -142900812 + AluSq SINE Alu 1 302 -11 716 250 54 67 chr4 41387850 41387949 -142900713 + MIR SINE MIR 142 241 -21 786 156 16 0 chr4 41388027 41388149 -142900513 + FLAM_A SINE Alu 2 125 -8 692 171 81 0 chr4 41388189 41388341 -142900321 - AluJb SINE Alu 0 325 165 2163 112 3 0 chr4 41388718 41389013 -142899649 + AluSx SINE Alu 1 296 -16 2376 81 0 43 chr4 41389328 41389650 -142899012 + AluY SINE Alu 1 308 -3 977 128 0 0 chr4 41390409 41390542 -142898120 + FLAM_C SINE Alu 1 133 0 584 68 39 0 chr4 41390543 41390646 -142898016 + (TA)n Simple_repeat Simple_repeat 2 108 0 422 331 70 6 chr4 41390665 41390822 -142897840 - MIR3 SINE MIR -17 191 25 350 271 78 46 chr4 41393120 41393329 -142895333 - MIR SINE MIR -42 220 10 542 127 0 0 chr4 41393368 41393447 -142895215 + Charlie5 DNA MER1_type 21 99 -2513 264 263 12 25 chr4 41393797 41393877 -142894785 - L1ME LINE L1 -249 5872 5794 729 253 94 37 chr4 41394092 41394337 -142894325 + MIR SINE MIR 2 260 -2 899 130 20 14 chr4 41394600 41394746 -142893916 + BC200 scRNA scRNA 1 147 -53 329 247 120 53 chr4 41395252 41395402 -142893260 + L1ME3 LINE L1 5562 5721 -400 2010 115 38 60 chr4 41395563 41395910 -142892752 - MER44D DNA MER2_type 0 609 1 2389 50 40 13 chr4 41395930 41396229 -142892433 + AluY SINE Alu 1 307 -4 350 205 164 0 chr4 41396262 41396384 -142892278 + L1ME4a LINE L1 5979 6120 -1 1884 114 3 63 chr4 41396691 41397006 -142891656 + AluSx SINE Alu 1 296 -16 239 135 0 0 chr4 41397010 41397047 -142891615 - Alu SINE Alu -65 237 201 2052 149 7 3 chr4 41397298 41397607 -142891055 + AluSx SINE Alu 1 310 -2 250 318 70 0 chr4 41398449 41398578 -142890084 - MER117 DNA MER1_type -48 149 12 2142 119 0 3 chr4 41398609 41398903 -142889759 - AluSx SINE Alu -18 294 2 206 283 228 0 chr4 41399211 41399303 -142889359 + MIR SINE MIR 29 141 -67 2110 131 6 13 chr4 41399317 41399630 -142889032 + AluSx SINE Alu 1 311 -1 361 335 82 19 chr4 41400264 41400422 -142888240 + MIR SINE MIR 43 210 -52 2378 80 0 0 chr4 41401133 41401421 -142887241 + AluSg1 SINE Alu 1 288 -21 1296 89 0 0 chr4 41401540 41401708 -142886954 + AluSp SINE Alu 131 298 -15 188 289 154 19 chr4 41401845 41401949 -142886713 + MIR SINE MIR 97 214 -48 1452 232 40 19 chr4 41402109 41402484 -142886178 + L1ME3 LINE L1 5776 6158 -4 2283 85 3 0 chr4 41402505 41402817 -142885845 + AluSx SINE Alu 1 313 0 811 153 0 0 chr4 41403093 41403204 -142885458 + FLAM_C SINE Alu 13 123 -20 2320 66 10 20 chr4 41403226 41403530 -142885132 + AluY SINE Alu 1 301 -10 2239 121 3 3 chr4 41403532 41403845 -142884817 + AluSq SINE Alu 1 313 0 251 361 161 28 chr4 41404048 41404228 -142884434 - L2 LINE L2 -50 3222 3019 907 116 23 8 chr4 41404419 41404548 -142884114 + AluSq/x SINE Alu 1 131 -182 1941 124 72 0 chr4 41405303 41405594 -142883068 + AluSx SINE Alu 1 312 0 2233 92 27 3 chr4 41405770 41406063 -142882599 + AluSx SINE Alu 2 301 -11 2328 110 3 0 chr4 41406063 41406402 -142882260 + AluSx SINE Alu 1 340 0 225 169 26 117 chr4 41406783 41406860 -142881802 - L1M3c LINE L1 -5109 1032 963 2380 92 0 0 chr4 41407344 41407648 -142881014 - AluSq SINE Alu -9 304 1 195 42 0 0 chr4 41409240 41409264 -142879398 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 314 164 60 0 chr4 41409295 41409362 -142879300 + MIR SINE MIR 71 141 -121 211 281 0 18 chr4 41409781 41409838 -142878824 + CT-rich Low_complexity Low_complexity 3 58 0 2551 77 3 0 chr4 41409881 41410192 -142878470 - AluSx SINE Alu 0 312 1 276 130 0 0 chr4 41410728 41410774 -142877888 + (TTCC)n Simple_repeat Simple_repeat 1 46 0 2070 132 10 7 chr4 41410774 41411069 -142877593 - AluSx SINE Alu -16 296 1 1839 165 45 15 chr4 41411230 41411295 -142877367 - MER2 DNA MER2_type 0 345 283 374 50 33 0 chr4 41411295 41411355 -142877307 + L1MA3 LINE L1 6244 6305 0 1839 165 45 15 chr4 41411355 41411623 -142877039 - MER2 DNA MER2_type -62 283 2 21 0 0 0 chr4 41411669 41411690 -142876972 + AT_rich Low_complexity Low_complexity 1 21 0 2237 103 3 25 chr4 41411782 41412101 -142876561 - AluSx SINE Alu 0 312 1 248 212 195 42 chr4 41412171 41412289 -142876373 - MIR3 SINE MIR -71 137 2 1189 94 198 0 chr4 41412329 41412521 -142876141 + MER30 DNA MER1_type 1 230 0 1569 161 7 61 chr4 41412540 41412850 -142875812 + AluJb SINE Alu 3 295 -17 2444 84 3 0 chr4 41412922 41413220 -142875442 - AluSp SINE Alu -13 300 2 2441 84 0 7 chr4 41413284 41413592 -142875070 - AluSc SINE Alu -3 306 1 1691 193 165 85 chr4 41414510 41414812 -142873850 + Charlie1a DNA MER1_type 1 277 -2484 2237 105 13 16 chr4 41414812 41415126 -142873536 - AluSq SINE Alu 0 313 1 1691 193 165 85 chr4 41415126 41415436 -142873226 + Charlie1a DNA MER1_type 277 662 -793 295 147 213 0 chr4 41415412 41415487 -142873175 + MER66A LTR ERV1 246 336 -142 * 21 36 0 0 chr4 41415487 41415515 -142873147 + AT_rich Low_complexity Low_complexity 1 28 0 1769 186 9 3 chr4 41415522 41415848 -142872814 + Charlie1a DNA MER1_type 645 972 -483 245 121 0 0 chr4 41415848 41415881 -142872781 + AluSx SINE Alu 1 33 -100 2290 114 0 0 chr4 41416073 41416380 -142872282 - AluY SINE Alu -4 307 1 2277 107 0 3 chr4 41416555 41416853 -142871809 + AluSx SINE Alu 9 305 -7 233 254 34 0 chr4 41416866 41416925 -142871737 + CT-rich Low_complexity Low_complexity 3 63 0 548 201 58 58 chr4 41417753 41417779 -142870883 - L1ME2 LINE L1 -9 6155 6130 2238 110 0 0 chr4 41417779 41418070 -142870592 + AluSx SINE Alu 1 291 -21 548 201 58 58 chr4 41418070 41418217 -142870445 - L1ME2 LINE L1 -33 6131 5982 2302 66 33 0 chr4 41418534 41418808 -142869854 + AluSg SINE Alu 7 289 -21 1357 94 0 11 chr4 41418808 41418989 -142869673 + AluSg/x SINE Alu 134 312 0 236 219 158 12 chr4 41419019 41419101 -142869561 - MIR SINE MIR -66 196 103 2106 105 30 30 chr4 41419106 41419401 -142869261 + AluSx SINE Alu 1 295 -17 2131 126 3 0 chr4 41419532 41419826 -142868836 + AluSq SINE Alu 1 295 -18 269 319 147 0 chr4 41419977 41420093 -142868569 + L2 LINE L2 2623 2755 -559 319 273 91 9 chr4 41420529 41420639 -142868023 + L2 LINE L2 3154 3272 0 236 158 0 0 chr4 41420763 41420801 -142867861 + Charlie8 DNA MER1_type 221 258 -2159 2046 190 3 11 chr4 41420907 41421280 -142867382 - MLT1B LTR MaLR 0 390 21 2092 99 4 0 chr4 41422069 41422341 -142866321 + AluSq SINE Alu 23 295 -18 438 269 119 26 chr4 41422520 41422713 -142865949 - MIR SINE MIR 0 262 52 1863 139 0 4 chr4 41422791 41423113 -142865549 - AluSq SINE Alu 0 340 20 383 188 0 0 chr4 41423113 41423177 -142865485 - AluJo SINE Alu -160 142 79 191 310 102 32 chr4 41423407 41423594 -142865068 - L2 LINE L2 -463 2851 2652 2085 109 17 3 chr4 41423595 41423889 -142864773 + AluSg SINE Alu 1 298 -12 266 270 0 0 chr4 41423910 41423973 -142864689 + MIR SINE MIR 88 150 -112 241 250 36 60 chr4 41423969 41424053 -142864609 + L2 LINE L2 3188 3269 -3 * 2047 149 0 3 chr4 41424482 41424790 -142863872 + AluJb SINE Alu 1 307 -5 379 336 0 14 chr4 41425117 41425263 -142863399 + MIR SINE MIR 23 166 -96 764 209 109 5 chr4 41425280 41425490 -142863172 + L1ME3A LINE L1 5939 6170 0 2712 106 11 0 chr4 41426392 41426752 -142861910 - THE1B LTR MaLR 0 364 1 2318 106 0 3 chr4 41427707 41428008 -142860654 - AluSx SINE Alu -12 300 1 566 264 38 13 chr4 41428008 41428167 -142860495 - MIR SINE MIR -68 194 32 1105 75 0 0 chr4 41428598 41428732 -142859930 + AluY SINE Alu 1 134 -177 264 91 0 0 chr4 41428832 41428876 -142859786 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 2064 120 18 0 chr4 41428883 41429159 -142859503 - AluSx SINE Alu -31 281 1 2185 110 6 35 chr4 41429167 41429484 -142859178 - AluSx SINE Alu -4 308 1 416 174 12 35 chr4 41429484 41429561 -142859101 + Tigger5 DNA MER2_type 2247 2323 0 443 236 43 36 chr4 41429561 41429701 -142858961 - MER3 DNA MER1_type -68 141 1 1212 68 0 0 chr4 41429706 41429911 -142858751 - AluYa8 SINE Alu 0 337 133 1822 111 66 15 chr4 41429912 41430183 -142858479 - AluSx SINE Alu -5 307 23 2080 101 20 10 chr4 41430280 41430578 -142858084 - AluSc SINE Alu -8 301 1 182 176 0 0 chr4 41430690 41430724 -142857938 + L3 LINE CR1 711 744 -833 2087 159 118 20 chr4 41430753 41431143 -142857519 + MSTA LTR MaLR 1 428 0 3509 162 32 2 chr4 41431143 41431742 -142856920 + MSTA-int LTR MaLR 1 617 -1034 547 118 0 0 chr4 41431843 41431919 -142856743 + AluS SINE Alu 220 295 -17 699 239 35 80 chr4 41432048 41432249 -142856413 - MER58A DNA MER1_type -26 198 7 2033 159 0 6 chr4 41432358 41432672 -142855990 - AluJb SINE Alu 0 312 1 233 37 0 0 chr4 41432835 41432862 -142855800 + (T)n Simple_repeat Simple_repeat 1 27 0 664 293 36 28 chr4 41432972 41433221 -142855441 - L1MEc LINE L1 -6115 281 31 269 231 31 0 chr4 41434745 41434810 -142853852 - MER103 DNA DNA -25 141 75 183 42 0 0 chr4 41435063 41435087 -142853575 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1602 55 5 32 chr4 41435090 41435310 -142853352 - AluY SINE Alu -20 291 78 1559 104 0 28 chr4 41435632 41435844 -142852818 - AluY SINE Alu -105 206 1 307 100 0 0 chr4 41435844 41435884 -142852778 + MSTA LTR MaLR 389 428 0 189 314 167 19 chr4 41435885 41436041 -142852621 + MIR SINE MIR 54 232 -30 402 360 118 22 chr4 41436192 41436656 -142852006 + L3 LINE CR1 794 1302 -275 1005 150 0 0 chr4 41486899 41487046 -142801616 + AluSg/x SINE Alu 154 300 -12 2244 116 0 0 chr4 41487579 41487880 -142800782 - AluSx SINE Alu -7 305 5 236 109 0 43 chr4 41488142 41488188 -142800474 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 1077 89 0 20 chr4 41488192 41488338 -142800324 + AluSq/x SINE Alu 1 143 -170 280 98 0 0 chr4 41488338 41488379 -142800283 + AluSq/x SINE Alu 95 135 -168 407 58 0 0 chr4 41488379 41488431 -142800231 + AluSc SINE Alu 82 133 -176 1586 113 0 5 chr4 41488431 41488643 -142800019 + AluSg/x SINE Alu 82 292 -18 264 300 80 10 chr4 41488738 41488838 -142799824 + MIR3 SINE MIR 70 176 -32 1610 185 3 23 chr4 41488862 41489170 -142799492 - AluJb SINE Alu -10 302 1 809 150 0 34 chr4 41489615 41489762 -142798900 + AluSg/x SINE Alu 171 312 0 1971 126 18 4 chr4 41489770 41490047 -142798615 + AluSq SINE Alu 1 281 -32 243 0 0 0 chr4 41490047 41490074 -142798588 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 268 311 47 58 chr4 41490658 41490848 -142797814 - L2 LINE L2 -10 3262 3075 518 139 78 0 chr4 41490926 41490947 -142797715 - L1MB5 LINE L1 -2 6172 6154 1818 159 14 3 chr4 41490947 41491237 -142797425 - AluSx SINE Alu -19 293 1 518 139 78 0 chr4 41491237 41491330 -142797332 - L1MB5 LINE L1 -20 6154 6049 1326 205 4 0 chr4 41491330 41491569 -142797093 - AluJb SINE Alu -7 305 66 2174 93 0 4 chr4 41491669 41491938 -142796724 - AluSg SINE Alu -41 269 2 2084 103 7 3 chr4 41491996 41492301 -142796361 - AluSx SINE Alu 0 306 1 302 304 43 22 chr4 41492907 41493045 -142795617 + L2 LINE L2 2596 2736 -578 1860 131 29 4 chr4 41493072 41493371 -142795291 + AluJb SINE Alu 1 306 0 715 180 0 0 chr4 41493593 41493715 -142794947 + FLAM_C SINE Alu 5 126 -17 1889 140 4 0 chr4 41493851 41494123 -142794539 - AluSx SINE Alu -39 273 1 184 296 87 35 chr4 41494160 41494332 -142794330 + L2 LINE L2 2771 2951 -363 22 35 0 0 chr4 41494519 41494548 -142794114 + AT_rich Low_complexity Low_complexity 1 29 0 2812 135 8 70 chr4 41494684 41494743 -142793919 + L1MC1 LINE L1 5835 5896 -437 2206 121 3 3 chr4 41494743 41495050 -142793612 + AluSx SINE Alu 1 307 -5 2812 135 8 70 chr4 41495050 41495522 -142793140 + L1MC1 LINE L1 5896 6333 0 460 241 6 6 chr4 41495525 41495695 -142792967 + (TA)n Simple_repeat Simple_repeat 2 171 0 2139 123 3 3 chr4 41495767 41496067 -142792595 + AluSx SINE Alu 3 302 -10 359 125 66 75 chr4 41496150 41496313 -142792349 - MER3 DNA MER1_type -1 208 5 2211 122 0 0 chr4 41496465 41496759 -142791903 - AluSx SINE Alu -18 294 1 831 122 0 14 chr4 41497004 41497143 -142791519 - Alu SINE Alu 0 310 174 635 115 0 10 chr4 41497243 41497339 -142791323 - AluSq/x SINE Alu -180 133 39 32 48 0 48 chr4 41497492 41497546 -142791116 + AT_rich Low_complexity Low_complexity 1 51 -28 2490 43 3 13 chr4 41497546 41497847 -142790815 + AluY SINE Alu 14 311 0 32 48 0 48 chr4 41497847 41497875 -142790787 + AT_rich Low_complexity Low_complexity 51 79 0 1382 176 38 22 chr4 41497995 41498091 -142790571 + AluJo SINE Alu 40 133 -179 2462 88 3 0 chr4 41498091 41498399 -142790263 + AluSp SINE Alu 1 309 -4 1382 176 38 22 chr4 41498399 41498569 -142790093 + AluJo SINE Alu 133 310 -2 1328 131 5 0 chr4 41499094 41499285 -142789377 - AluSg/x SINE Alu -3 307 116 2551 4 0 0 chr4 41499388 41499657 -142789005 - AluYa5 SINE Alu -42 269 1 2358 108 0 0 chr4 41500030 41500337 -142788325 - AluSx SINE Alu -4 308 2 313 167 61 0 chr4 41500640 41500706 -142787956 - MIR SINE MIR -91 171 102 1632 87 59 5 chr4 41500907 41501126 -142787536 - AluSx SINE Alu -21 291 61 1258 204 24 8 chr4 41501214 41501469 -142787193 - MER58 DNA MER1_type -81 260 2 2338 99 0 3 chr4 41501904 41502206 -142786456 + AluSx SINE Alu 1 301 -11 392 191 17 98 chr4 41502206 41502300 -142786362 - MER113 DNA MER1_type? -345 176 101 1932 138 0 0 chr4 41502300 41502582 -142786080 + AluSx SINE Alu 30 311 -1 392 191 17 98 chr4 41502582 41502660 -142786002 - MER113 DNA MER1_type? -420 101 18 641 227 182 0 chr4 41502927 41503130 -142785532 + MIR SINE MIR 2 241 -21 277 141 0 113 chr4 41503160 41503231 -142785431 + AluSq/x SINE Alu 84 146 -156 719 158 0 0 chr4 41503231 41503345 -142785317 + AluJo/FRAM SINE Alu 176 289 -23 1578 143 18 22 chr4 41503449 41503722 -142784940 + L1MB7 LINE L1 5738 6009 -175 1862 141 0 33 chr4 41504001 41504307 -142784355 + AluJb SINE Alu 1 296 -16 29 28 0 0 chr4 41504504 41504540 -142784122 + AT_rich Low_complexity Low_complexity 1 36 0 2333 108 0 0 chr4 41504615 41504921 -142783741 - AluY SINE Alu -5 306 1 2175 119 0 10 chr4 41504924 41505226 -142783436 - AluSx SINE Alu -13 299 1 367 267 140 7 chr4 41505233 41505383 -142783279 - MIR SINE MIR -11 251 82 1964 178 81 35 chr4 41505588 41506072 -142782590 - LTR54 LTR ERV1 0 510 5 735 191 0 0 chr4 41506072 41506198 -142782464 - FLAM_A SINE Alu -16 126 1 1129 61 0 0 chr4 41506431 41506563 -142782099 - AluY SINE Alu -179 132 1 1738 60 0 19 chr4 41506565 41506780 -142781882 - AluSg SINE Alu -99 211 1 606 276 98 14 chr4 41506780 41507055 -142781607 - L2 LINE L2 -559 2755 2458 3053 87 7 39 chr4 41507062 41507332 -142781330 + L1PB2 LINE L1 5703 5953 -198 2149 120 7 7 chr4 41507332 41507633 -142781029 + AluSg SINE Alu 1 301 -9 3053 87 7 39 chr4 41507633 41507823 -142780839 + L1PB2 LINE L1 5953 6148 -3 2434 100 0 0 chr4 41508339 41508648 -142780014 + AluSg SINE Alu 1 309 -1 468 243 167 65 chr4 41508777 41509040 -142779622 + L2 LINE L2 3023 3312 -1 195 324 14 0 chr4 41509035 41509106 -142779556 + MIR SINE MIR 183 254 -8 * 30 45 0 0 chr4 41509181 41509225 -142779437 + AT_rich Low_complexity Low_complexity 1 44 0 1386 126 0 24 chr4 41509328 41509534 -142779128 - AluSx SINE Alu -111 201 1 1417 176 118 14 chr4 41509603 41509773 -142778889 - Charlie4a DNA MER1_type -1578 383 232 1914 164 0 23 chr4 41509773 41510077 -142778585 - AluJb SINE Alu -14 298 2 1417 176 118 14 chr4 41510077 41510253 -142778409 - Charlie4a DNA MER1_type -1729 232 1 2482 62 0 0 chr4 41510387 41510692 -142777970 - AluY SINE Alu -6 305 1 2213 66 21 3 chr4 41511316 41511603 -142777059 - AluSx SINE Alu -20 292 1 380 130 0 0 chr4 41512085 41512161 -142776501 + AluSp/q SINE Alu 232 307 0 1865 123 13 26 chr4 41512346 41512648 -142776014 - AluSx SINE Alu -14 298 1 317 257 54 0 chr4 41513880 41513954 -142774708 + L2 LINE L2 3230 3307 -6 2142 96 4 0 chr4 41514113 41514429 -142774233 + AluSg SINE Alu 1 317 0 892 158 0 0 chr4 41514709 41514848 -142773814 - FLAM_C SINE Alu -4 139 1 1675 122 46 0 chr4 41514863 41515125 -142773537 - AluSx SINE Alu 0 312 39 329 200 21 74 chr4 41515225 41515320 -142773342 - AluS SINE Alu -213 90 1 187 262 0 0 chr4 41515463 41515505 -142773157 - MIR SINE MIR -16 246 205 184 311 96 53 chr4 41515631 41515840 -142772822 - L2 LINE L2 -226 3046 2829 2229 109 0 0 chr4 41515898 41516210 -142772452 - AluSx SINE Alu 0 312 1 192 321 89 48 chr4 41516238 41516633 -142772029 - L2 LINE L2 -654 2660 2250 250 287 141 75 chr4 41516978 41517005 -142771657 + L2 LINE L2 2732 2756 -557 329 0 24 0 chr4 41517005 41517046 -142771616 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1832 155 3 0 chr4 41517051 41517341 -142771321 - AluJb SINE Alu -21 291 1 250 287 141 75 chr4 41517341 41517711 -142770951 + L2 LINE L2 2759 3152 -161 591 309 81 13 chr4 41518282 41518307 -142770355 - L2 LINE L2 -179 3134 3112 2114 117 3 0 chr4 41518307 41518615 -142770047 + AluSx SINE Alu 1 309 -3 591 309 81 13 chr4 41518615 41518896 -142769766 - L2 LINE L2 -201 3112 2807 221 350 29 10 chr4 41519382 41519485 -142769177 + MIR SINE MIR 44 148 -114 1467 229 56 74 chr4 41519494 41519930 -142768732 - MLT1E3 LTR MaLR -2 622 169 839 153 0 0 chr4 41519930 41520054 -142768608 - FLAM_C SINE Alu -6 127 4 1467 229 56 74 chr4 41520054 41520221 -142768441 - MLT1E3 LTR MaLR -455 169 1 2148 92 7 0 chr4 41520384 41520677 -142767985 + AluSx SINE Alu 2 296 -16 628 106 0 0 chr4 41521084 41521169 -142767493 - AluY SINE Alu -232 86 2 2066 201 16 19 chr4 41521864 41522062 -142766600 + MER63B DNA MER1_type 1 198 -864 2065 129 0 0 chr4 41522062 41522364 -142766298 + AluSx SINE Alu 1 302 -10 2165 101 0 3 chr4 41522366 41522662 -142766000 + AluSx SINE Alu 1 295 -17 2066 201 16 19 chr4 41522662 41522887 -142765775 + MER63B DNA MER1_type 199 426 -10 638 295 40 40 chr4 41523183 41523434 -142765228 - MIR SINE MIR -1 261 11 629 121 379 21 chr4 41523708 41523848 -142764814 + AluJo SINE Alu 112 301 -11 1802 143 24 3 chr4 41523848 41524142 -142764520 + AluSx SINE Alu 1 300 -12 2463 57 0 0 chr4 41524307 41524607 -142764055 - AluY SINE Alu -11 300 1 1116 130 0 6 chr4 41524629 41524798 -142763864 - FRAM SINE Alu -9 167 1 246 239 39 67 chr4 41524806 41524986 -142763676 + L1MC4a LINE L1 5765 5939 -1869 1890 136 0 7 chr4 41525166 41525452 -142763210 + AluJb SINE Alu 14 297 -15 577 111 11 0 chr4 41525490 41525580 -142763082 + MER53 DNA DNA 99 189 0 29 28 0 0 chr4 41525783 41525819 -142762843 + AT_rich Low_complexity Low_complexity 1 36 0 745 289 45 12 chr4 41526556 41526798 -142761864 + LTR33 LTR ERVL 38 287 -234 2061 109 16 13 chr4 41526800 41527111 -142761551 - AluSx SINE Alu 0 312 1 22 80 0 0 chr4 41527352 41527402 -142761260 + AT_rich Low_complexity Low_complexity 1 50 0 30 19 0 39 chr4 41527513 41527544 -142761118 + AT_rich Low_complexity Low_complexity 1 31 -19 717 167 18 0 chr4 41527544 41527658 -142761004 - FLAM_A SINE Alu -17 116 1 30 19 0 39 chr4 41527658 41527678 -142760984 + AT_rich Low_complexity Low_complexity 31 50 0 22 96 0 0 chr4 41527723 41527775 -142760887 + AT_rich Low_complexity Low_complexity 1 52 0 21 36 0 0 chr4 41528184 41528212 -142760450 + AT_rich Low_complexity Low_complexity 1 28 0 2596 29 0 7 chr4 41528913 41529223 -142759439 - AluY SINE Alu -3 308 1 195 42 0 0 chr4 41529487 41529511 -142759151 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2127 113 0 0 chr4 41529511 41529795 -142758867 - AluSx SINE Alu -28 284 1 1219 167 0 22 chr4 41529866 41530088 -142758574 - AluJb SINE Alu -45 267 51 231 205 0 0 chr4 41530097 41530136 -142758526 - MIR SINE MIR -4 258 220 862 206 0 11 chr4 41530139 41530323 -142758339 - FRAM SINE Alu -1 175 1 322 211 161 21 chr4 41530323 41530442 -142758220 - MIR SINE MIR -62 146 58 1277 210 15 4 chr4 41530480 41530742 -142757920 - AluJo SINE Alu -47 265 1 1143 144 0 93 chr4 41531204 41531440 -142757222 + MER20 DNA MER1_type 4 217 -2 764 100 8 25 chr4 41531474 41531594 -142757068 - FLAM_C SINE Alu 0 143 26 1165 141 0 0 chr4 41531721 41531898 -142756764 - AluSg/x SINE Alu -2 308 132 1868 122 7 23 chr4 41531898 41532201 -142756461 - AluSx SINE Alu -14 298 1 960 272 66 25 chr4 41532263 41532733 -142755929 - L1MEc LINE L1 -4863 1250 762 745 175 0 44 chr4 41532733 41532870 -142755792 - FLAM_A SINE Alu -1 132 2 1072 146 5 60 chr4 41532872 41533040 -142755622 - AluJo SINE Alu -17 295 138 2072 129 0 7 chr4 41533040 41533349 -142755313 - AluSc SINE Alu -2 307 1 1072 146 5 60 chr4 41533349 41533379 -142755283 - AluJo SINE Alu -174 138 108 306 0 0 0 chr4 41533379 41533413 -142755249 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2066 104 13 0 chr4 41533417 41533715 -142754947 - AluSx SINE Alu -10 302 1 1657 157 20 7 chr4 41533779 41534072 -142754590 - AluJb SINE Alu -13 299 3 344 235 5 103 chr4 41534075 41534288 -142754374 - L1MEc LINE L1 -5341 776 585 895 179 5 77 chr4 41534516 41534711 -142753951 - MER5A DNA MER1_type -8 181 1 1718 111 13 70 chr4 41534736 41535051 -142753611 - AluJb SINE Alu -15 297 1 437 345 64 77 chr4 41535237 41535507 -142753155 - L1MEc LINE L1 -5931 465 199 2137 92 3 0 chr4 41535507 41535817 -142752845 + AluY SINE Alu 1 311 0 437 345 64 77 chr4 41535817 41535936 -142752726 - L1MEc LINE L1 -6197 199 80 241 270 48 0 chr4 41536049 41536112 -142752550 + L2 LINE L2 3248 3313 0 2172 112 3 0 chr4 41536287 41536592 -142752070 + AluSp SINE Alu 1 306 -7 2086 103 23 7 chr4 41536628 41536930 -142751732 + AluSx SINE Alu 1 307 -5 288 323 10 0 chr4 41536935 41537034 -142751628 + MIR SINE MIR 56 155 -107 240 375 0 0 chr4 41537119 41537207 -142751455 + MIR SINE MIR 35 122 -86 474 191 140 59 chr4 41537396 41537532 -142751130 - L2 LINE L2 -9 3304 3158 2182 92 6 13 chr4 41537535 41537849 -142750813 + AluSx SINE Alu 1 312 0 896 254 11 128 chr4 41537885 41538013 -142750649 + MER21B LTR ERV1 13 154 -709 1467 155 53 50 chr4 41538013 41538316 -142750346 - AluJo SINE Alu -8 304 1 896 254 11 128 chr4 41538316 41538569 -142750093 + MER21B LTR ERV1 154 349 -514 984 228 69 13 chr4 41538623 41538855 -142749807 + MER21B LTR ERV1 355 599 -264 1562 123 0 0 chr4 41539033 41539252 -142749410 + AluSx SINE Alu 1 219 -93 686 237 82 27 chr4 41539304 41539523 -142749139 + MER21B LTR ERV1 612 842 -21 515 288 120 32 chr4 41539546 41539855 -142748807 - L2 LINE L2 -172 3141 2806 568 218 36 0 chr4 41539879 41539989 -142748673 + MER81 DNA DNA 1 114 0 655 68 23 0 chr4 41540058 41540146 -142748516 - AluSp/q SINE Alu -18 295 206 1432 294 3 71 chr4 41540146 41540472 -142748190 - AluY SINE Alu -5 306 3 2035 95 14 0 chr4 41540675 41540958 -142747704 + AluSp SINE Alu 1 287 -26 219 36 0 0 chr4 41540961 41540989 -142747673 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 878 260 32 14 chr4 41541010 41541203 -142747459 + MIR SINE MIR 30 229 -33 2105 78 41 3 chr4 41541203 41541496 -142747166 + AluY SINE Alu 1 304 -7 878 260 32 14 chr4 41541496 41541521 -142747141 + MIR SINE MIR 229 252 -10 2572 90 8 11 chr4 41541524 41541880 -142746782 + THE1A LTR MaLR 1 355 0 1892 85 35 35 chr4 41542307 41542624 -142746038 + AluSp SINE Alu 1 317 0 1580 124 85 35 chr4 41543111 41543393 -142745269 + AluSx SINE Alu 1 296 -16 240 35 0 0 chr4 41544359 41544388 -142744274 + (GA)n Simple_repeat Simple_repeat 2 30 0 1955 122 10 7 chr4 41544406 41544720 -142743942 - AluSx SINE Alu 0 312 1 1574 205 0 19 chr4 41544980 41545297 -142743365 - AluJb SINE Alu -1 311 1 217 265 111 68 chr4 41545420 41545537 -142743125 + L2 LINE L2 3150 3271 -1 181 219 0 0 chr4 41545581 41545613 -142743049 + MIR SINE MIR 113 144 -118 2265 101 0 0 chr4 41546828 41547134 -142741528 - AluSx SINE Alu -6 306 1 776 289 29 0 chr4 41547330 41547576 -142741086 + LTR16C LTR ERVL 232 484 -7 2262 86 0 0 chr4 41547766 41548058 -142740604 - AluSx SINE Alu -20 292 1 318 292 62 0 chr4 41548128 41548224 -142740438 + L2 LINE L2 3212 3313 0 2199 103 0 0 chr4 41549043 41549335 -142739327 + AluSg SINE Alu 3 294 -16 2069 114 27 0 chr4 41549337 41549635 -142739027 + AluSx SINE Alu 1 306 -6 1780 152 9 19 chr4 41551176 41551491 -142737171 - AluJb SINE Alu 0 312 1 180 0 0 0 chr4 41551541 41551561 -142737101 + (TA)n Simple_repeat Simple_repeat 2 21 0 2367 79 3 0 chr4 41551561 41551865 -142736797 - AluSp SINE Alu -8 305 1 642 202 8 0 chr4 41551990 41552119 -142736543 + FLAM_C SINE Alu 11 140 -3 839 223 46 0 chr4 41552221 41552396 -142736266 + AluJb SINE Alu 121 303 -9 344 240 104 79 chr4 41552573 41552752 -142735910 - MIR3 SINE MIR -43 165 16 194 250 25 0 chr4 41553374 41553414 -142735248 - L3 LINE CR1 -25 1552 1512 434 167 250 9 chr4 41553434 41553542 -142735120 - L2 LINE L2 -1 3312 3179 2021 13 0 0 chr4 41553544 41553772 -142734890 - AluYa5 SINE Alu -9 302 75 739 155 9 0 chr4 41553806 41553922 -142734740 - Tigger1 DNA MER2_type 0 2418 2302 * 9875 117 25 15 chr4 41553912 41553979 -142734683 - Tigger1 DNA MER2_type -882 1536 1471 1743 151 10 10 chr4 41553979 41554291 -142734371 - AluJb SINE Alu 0 312 1 9875 117 25 15 chr4 41554291 41555265 -142733397 - Tigger1 DNA MER2_type -947 1471 472 1955 115 11 0 chr4 41555265 41555575 -142733087 - AluSx SINE Alu 0 313 1 9875 117 25 15 chr4 41555575 41556029 -142732633 - Tigger1 DNA MER2_type -1946 472 24 930 257 72 26 chr4 41556035 41556489 -142732173 - L2 LINE L2 -158 3155 2669 1640 153 4 0 chr4 41556723 41556985 -142731677 - AluSx SINE Alu -39 273 11 811 112 0 0 chr4 41557252 41557359 -142731303 + AluSq/x SINE Alu 1 107 -206 463 167 0 0 chr4 41557459 41557525 -142731137 - AluJ/FLAM SINE Alu -244 68 3 2328 160 11 33 chr4 41557575 41557825 -142730837 - L1MB5 LINE L1 -17 6157 5920 2067 110 0 0 chr4 41557825 41558116 -142730546 + AluSx SINE Alu 1 291 -21 2328 160 11 33 chr4 41558116 41558316 -142730346 - L1MB5 LINE L1 -254 5920 5717 838 189 37 30 chr4 41558516 41558680 -142729982 - FRAM SINE Alu -12 164 1 300 289 99 82 chr4 41558695 41559037 -142729625 + Charlie8 DNA MER1_type 75 422 -1995 437 165 16 211 chr4 41559121 41559189 -142729473 - L1MB7 LINE L1 -3 6181 6101 2004 87 0 54 chr4 41559189 41559525 -142729137 + AluSx SINE Alu 1 320 0 437 165 16 211 chr4 41559525 41559660 -142729002 - L1MB7 LINE L1 -83 6101 6028 1947 86 118 0 chr4 41559660 41559939 -142728723 + AluSx SINE Alu 1 312 0 437 165 16 211 chr4 41559939 41559975 -142728687 - L1MB7 LINE L1 -156 6028 5987 328 143 16 0 chr4 41560746 41560809 -142727853 + MER53 DNA DNA 124 187 -2 273 258 124 10 chr4 41561181 41561278 -142727384 - MIR SINE MIR -68 194 87 200 209 93 0 chr4 41561472 41561515 -142727147 + L2 LINE L2 3226 3272 0 372 282 0 27 chr4 41561891 41562001 -142726661 - MIR3 SINE MIR -18 190 84 316 279 35 0 chr4 41563050 41563136 -142725526 - L2 LINE L2 0 3313 3225 228 35 0 0 chr4 41564039 41564068 -142724594 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 614 186 152 0 chr4 41564078 41564223 -142724439 + Charlie5 DNA MER1_type 1 167 -2445 * 1342 144 148 38 chr4 41564217 41564556 -142724106 + Charlie5 DNA MER1_type 2249 2624 0 1573 157 30 0 chr4 41564668 41564936 -142723726 + AluJb SINE Alu 1 276 -36 1061 126 164 65 chr4 41565044 41565216 -142723446 - AluJo SINE Alu -37 275 73 2126 88 23 10 chr4 41565216 41565523 -142723139 + AluSp SINE Alu 2 312 -1 1061 126 164 65 chr4 41565523 41565581 -142723081 - AluJo SINE Alu -239 73 22 405 0 0 0 chr4 41565582 41565627 -142723035 + (TG)n Simple_repeat Simple_repeat 2 46 0 299 326 103 17 chr4 41565759 41565992 -142722670 - L2 LINE L2 -1063 2251 1999 617 234 19 32 chr4 41566051 41566205 -142722457 - MIR SINE MIR -77 185 34 2119 117 10 0 chr4 41566300 41566609 -142722053 + AluSx SINE Alu 1 312 0 499 243 57 14 chr4 41567018 41567158 -142721504 + L3b LINE CR1 1248 1393 -190 983 256 49 4 chr4 41567268 41567514 -142721148 - MIR SINE MIR 0 262 6 331 254 107 89 chr4 41567612 41567950 -142720712 + MLT1H LTR MaLR 17 360 -182 1615 142 3 66 chr4 41568030 41568362 -142720300 - AluSx SINE Alu -1 311 1 959 85 0 0 chr4 41568368 41568497 -142720165 - L1MB3 LINE L1 0 6183 6055 1971 102 0 66 chr4 41568497 41568829 -142719833 - AluSq SINE Alu -3 310 1 1560 133 0 0 chr4 41568835 41569076 -142719586 - L1MB3 LINE L1 0 6183 5943 539 250 32 0 chr4 41569342 41569466 -142719196 - MIR SINE MIR -54 208 81 343 194 134 148 chr4 41569812 41570029 -142718633 - MER112 DNA MER1_type -46 214 1 596 68 0 0 chr4 41570033 41570107 -142718555 + Alu SINE Alu 224 297 -13 727 209 16 0 chr4 41570500 41570629 -142718033 + FLAM_C SINE Alu 1 131 -2 2342 71 0 3 chr4 41570636 41570932 -142717730 - AluSp SINE Alu -18 295 1 773 129 73 0 chr4 41571372 41571496 -142717166 - FLAM_C SINE Alu 0 133 1 1123 131 11 0 chr4 41571756 41571931 -142716731 - AluSg/x SINE Alu -2 310 134 188 0 0 69 chr4 41571933 41571962 -142716700 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 760 126 0 9 chr4 41571962 41572073 -142716589 - AluSp/q SINE Alu -29 284 175 183 281 175 18 chr4 41572180 41572294 -142716368 + L2 LINE L2 2924 3055 -217 239 233 50 0 chr4 41572488 41572548 -142716114 + MLT1L LTR MaLR 3 65 -550 2020 124 13 0 chr4 41572745 41573052 -142715610 + AluSx SINE Alu 1 311 -1 1878 116 0 75 chr4 41573137 41573457 -142715205 + AluSx SINE Alu 1 296 -16 828 233 73 12 chr4 41573991 41574236 -142714426 - MER58B DNA MER1_type -1 340 81 27 73 0 0 chr4 41574454 41574509 -142714153 + AT_rich Low_complexity Low_complexity 1 55 0 2182 89 0 7 chr4 41574510 41574802 -142713860 + AluSc SINE Alu 1 290 -19 21 26 0 26 chr4 41574827 41574845 -142713817 + AT_rich Low_complexity Low_complexity 1 18 -20 1950 97 50 0 chr4 41574845 41575124 -142713538 + AluSx SINE Alu 1 293 -19 21 26 0 26 chr4 41575124 41575144 -142713518 + AT_rich Low_complexity Low_complexity 18 38 0 1714 154 0 11 chr4 41575772 41576081 -142712581 - AluJb SINE Alu 0 306 1 1996 131 3 13 chr4 41576502 41576814 -142711848 + AluSx SINE Alu 1 309 -3 1034 239 143 67 chr4 41576940 41577451 -142711211 + MLT1H1 LTR MaLR 1 550 -5 1507 163 23 46 chr4 41577541 41577848 -142710814 - AluJo SINE Alu -12 300 1 2463 37 0 0 chr4 41577888 41578183 -142710479 + AluY SINE Alu 1 295 -16 275 356 27 27 chr4 41578187 41578234 -142710428 + L3 LINE CR1 1315 1361 -216 2284 73 6 19 chr4 41578234 41578551 -142710111 + AluSp SINE Alu 1 313 0 275 356 27 27 chr4 41578551 41578649 -142710013 + L3 LINE CR1 1360 1460 -117 433 303 103 36 chr4 41578711 41578906 -142709756 + MIR SINE MIR 47 254 -8 192 333 64 0 chr4 41578886 41578964 -142709698 + L3 LINE CR1 1471 1553 -24 * 305 291 95 90 chr4 41579343 41579432 -142709230 + MIR SINE MIR 14 101 -161 1959 125 3 26 chr4 41579432 41579744 -142708918 + AluSx SINE Alu 1 305 -7 305 291 95 90 chr4 41579744 41579843 -142708819 + MIR SINE MIR 101 203 -59 2398 67 0 0 chr4 41579913 41580212 -142708450 + AluSc SINE Alu 1 299 -10 1485 258 79 22 chr4 41580393 41580452 -142708210 - L1ME3A LINE L1 -5 6165 6111 739 180 8 23 chr4 41580452 41580580 -142708082 + FLAM_C SINE Alu 1 126 -7 1485 258 79 22 chr4 41580580 41581063 -142707599 - L1ME3A LINE L1 -59 6111 5592 354 133 0 40 chr4 41581085 41581160 -142707502 + (TCTCC)n Simple_repeat Simple_repeat 2 73 0 940 82 0 0 chr4 41581462 41581607 -142707055 + AluSg/x SINE Alu 160 304 0 393 270 103 24 chr4 41581858 41581984 -142706678 - MIR3 SINE MIR -3 205 70 787 137 23 23 chr4 41582325 41582456 -142706206 + FLAM_C SINE Alu 3 133 -10 847 232 49 99 chr4 41582515 41582920 -142705742 + MLT1J1 LTR MaLR 62 446 0 305 313 36 27 chr4 41583953 41584065 -142704597 + MIR SINE MIR 15 127 -135 1782 158 16 0 chr4 41584184 41584487 -142704175 + AluJo SINE Alu 1 308 -4 733 234 70 28 chr4 41584741 41584759 -142703903 + MIR SINE MIR 17 33 -229 2202 102 0 0 chr4 41584759 41585054 -142703608 + AluSg SINE Alu 2 296 -14 733 234 70 28 chr4 41585054 41585249 -142703413 + MIR SINE MIR 33 239 -23 399 158 0 45 chr4 41585262 41585354 -142703308 - AluJ/FLAM SINE Alu -240 62 1 230 321 0 25 chr4 41585461 41585542 -142703120 - MIR SINE MIR -135 127 49 509 313 34 0 chr4 41585701 41585877 -142702785 - MIR SINE MIR -1 261 80 696 140 0 0 chr4 41586414 41586521 -142702141 + AluSg/x SINE Alu 191 297 -15 1862 140 0 22 chr4 41586532 41586846 -142701816 + AluJb SINE Alu 1 307 -5 244 247 41 14 chr4 41586856 41586929 -142701733 + L1M4 LINE L1 4514 4588 -1558 1946 81 0 0 chr4 41587127 41587375 -142701287 + AluSq SINE Alu 39 286 -27 576 77 0 0 chr4 41587375 41587453 -142701209 + (TAGA)n Simple_repeat Simple_repeat 2 79 0 2474 50 0 0 chr4 41587802 41588100 -142700562 - AluY SINE Alu -13 298 1 2171 92 0 3 chr4 41588109 41588402 -142700260 - AluSx SINE Alu -20 292 1 3372 108 8 35 chr4 41588485 41588976 -142699686 - MER1A DNA MER1_type 0 529 52 336 281 117 56 chr4 41588992 41589241 -142699421 + L1MC4a LINE L1 1712 1975 -4421 2049 113 0 0 chr4 41589323 41589635 -142699027 + AluSx SINE Alu 1 312 0 399 342 53 9 chr4 41589658 41590000 -142698662 + L1MC4a LINE L1 4870 5226 -989 1028 93 6 49 chr4 41590021 41590127 -142698535 + L1PB1 LINE L1 5997 6095 -56 2178 101 3 16 chr4 41590127 41590434 -142698228 + AluSx SINE Alu 1 303 -9 1028 93 6 49 chr4 41590434 41590489 -142698173 + L1PB1 LINE L1 6095 6151 0 1740 94 68 4 chr4 41590505 41590770 -142697892 + AluSx SINE Alu 12 293 -19 488 253 82 10 chr4 41590773 41590967 -142697695 + L1MC4a LINE L1 5888 6095 -1782 651 144 135 0 chr4 41591009 41591113 -142697549 + FLAM_C SINE Alu 1 118 -15 44 0 0 0 chr4 41591113 41591157 -142697505 + AT_rich Low_complexity Low_complexity 1 44 0 2011 128 7 10 chr4 41591262 41591566 -142697096 + AluSx SINE Alu 1 303 -9 1640 140 45 21 chr4 41591852 41592138 -142696524 + AluSx SINE Alu 1 293 -19 706 97 32 0 chr4 41592142 41592266 -142696396 + GA-rich Low_complexity Low_complexity 1 128 0 2115 128 0 0 chr4 41592981 41593279 -142695383 + AluSx SINE Alu 1 298 -14 733 220 177 5 chr4 41593403 41593589 -142695073 + MER20 DNA MER1_type 1 218 -1 2092 91 17 3 chr4 41593687 41593983 -142694679 + AluSp SINE Alu 1 300 -13 369 164 0 0 chr4 41594107 41594162 -142694500 - MER81 DNA DNA -2 112 58 186 167 0 0 chr4 41594630 41594666 -142693996 + T-rich Low_complexity Low_complexity 1 36 0 429 131 12 83 chr4 41594717 41594801 -142693861 - AluJo SINE Alu -167 145 68 821 134 0 54 chr4 41594982 41595131 -142693531 - FRAM SINE Alu -18 158 18 854 235 54 5 chr4 41595198 41595402 -142693260 - MIR SINE MIR -26 236 23 309 313 46 23 chr4 41596297 41596428 -142692234 + L2 LINE L2 2603 2736 -578 1689 150 21 4 chr4 41596455 41596756 -142691906 + AluSp SINE Alu 1 306 0 408 322 187 0 chr4 41597051 41597383 -142691279 + L2 LINE L2 1647 2040 -1274 407 274 22 115 chr4 41597631 41597739 -142690923 + L2 LINE L2 2611 2727 -587 2040 119 0 7 chr4 41597739 41598033 -142690629 + AluSx SINE Alu 3 294 -18 2207 99 0 0 chr4 41598042 41598336 -142690326 + AluSg SINE Alu 1 294 -16 407 274 22 115 chr4 41598336 41598487 -142690175 + L2 LINE L2 2735 2855 -459 387 0 0 0 chr4 41598496 41598539 -142690123 + (TG)n Simple_repeat Simple_repeat 2 44 0 2057 91 4 4 chr4 41598540 41598815 -142689847 - AluSq SINE Alu -33 280 6 816 221 122 9 chr4 41598876 41599089 -142689573 - AluJo SINE Alu 0 312 76 244 175 0 0 chr4 41599089 41599129 -142689533 - Alu SINE Alu -128 175 136 2148 117 0 3 chr4 41599140 41599447 -142689215 - AluSx SINE Alu -6 306 1 2070 64 0 21 chr4 41599447 41599727 -142688935 - AluY SINE Alu -1 310 37 2415 53 0 0 chr4 41599734 41600033 -142688629 - AluY SINE Alu -2 309 11 1496 153 45 8 chr4 41600040 41600308 -142688354 - L1PA13 LINE L1 0 6163 5886 357 298 69 38 chr4 41600328 41600459 -142688203 + MIR3 SINE MIR 25 159 -49 746 94 0 27 chr4 41600563 41600620 -142688042 - L1PA13 LINE L1 -281 5882 5826 1651 143 82 0 chr4 41600620 41600900 -142687762 - AluJb SINE Alu -9 303 1 746 94 0 27 chr4 41600900 41600952 -142687710 - L1PA13 LINE L1 -337 5826 5774 2461 65 0 0 chr4 41600955 41601262 -142687400 - AluY SINE Alu -4 307 1 1148 259 19 49 chr4 41601303 41601673 -142686989 + L2 LINE L2 2953 3311 -2 184 246 61 44 chr4 41601698 41601812 -142686850 + L2 LINE L2 2468 2583 -731 238 308 116 30 chr4 41601895 41602093 -142686569 + L2 LINE L2 2807 3021 -251 195 319 66 11 chr4 41602208 41602299 -142686363 + L2 LINE L2 3143 3238 -75 2031 116 36 7 chr4 41602332 41602692 -142685970 - AluSq SINE Alu 0 369 1 272 338 0 0 chr4 41602695 41602769 -142685893 + L2 LINE L2 3231 3304 -9 491 272 129 32 chr4 41602794 41603011 -142685651 - MIR SINE MIR 0 262 25 952 80 7 33 chr4 41603034 41603184 -142685478 - L1MA5 LINE L1 -3 6297 6152 35 0 0 0 chr4 41603194 41603229 -142685433 + AT_rich Low_complexity Low_complexity 1 35 0 1405 172 55 45 chr4 41603229 41603373 -142685289 - AluJb SINE Alu -19 293 152 2090 71 67 0 chr4 41603373 41603656 -142685006 - AluSx SINE Alu -10 302 1 1405 172 55 45 chr4 41603656 41603801 -142684861 - AluJb SINE Alu -160 152 1 742 182 0 0 chr4 41604043 41604164 -142684498 - FLAM_A SINE Alu -12 121 1 349 246 0 0 chr4 41604304 41604373 -142684289 - L2 LINE L2 -2 3311 3243 921 230 60 17 chr4 41604449 41604684 -142683978 + MIR SINE MIR 15 259 -3 21 57 0 0 chr4 41605277 41605312 -142683350 + AT_rich Low_complexity Low_complexity 1 35 0 2187 88 0 10 chr4 41605427 41605722 -142682940 + AluSg SINE Alu 1 292 -18 822 160 0 0 chr4 41605791 41605910 -142682752 + AluJb SINE Alu 2 120 -192 720 57 0 0 chr4 41606099 41606187 -142682475 - AluS SINE Alu -223 89 2 2154 105 0 7 chr4 41606289 41606585 -142682077 + AluSc SINE Alu 1 294 -15 35 54 0 0 chr4 41606696 41606752 -142681910 + AT_rich Low_complexity Low_complexity 1 56 0 1674 167 26 7 chr4 41606972 41607278 -142681384 + AluJb SINE Alu 1 312 0 790 159 68 25 chr4 41607294 41607457 -142681205 + FRAM SINE Alu 1 169 -7 2282 94 0 0 chr4 41607541 41607848 -142680814 + AluSg SINE Alu 1 307 -3 393 207 58 58 chr4 41607858 41607979 -142680683 + L2 LINE L2 2300 2420 -894 1518 174 8 4 chr4 41608160 41608419 -142680243 + AluJo SINE Alu 1 260 -52 388 315 61 52 chr4 41608444 41608747 -142679915 + L2 LINE L2 2742 3066 -247 2033 118 7 0 chr4 41608929 41609234 -142679428 + AluSx SINE Alu 1 307 -5 2166 88 3 3 chr4 41609239 41609534 -142679128 + AluSg SINE Alu 1 295 -15 857 128 0 40 chr4 41609698 41609847 -142678815 - FLAM_C SINE Alu 0 143 1 1025 258 135 45 chr4 41611077 41611611 -142677051 - L2 LINE L2 0 3313 2699 2162 130 0 0 chr4 41611611 41611904 -142676758 + AluSx SINE Alu 1 293 -19 1025 258 135 45 chr4 41611904 41611998 -142676664 - L2 LINE L2 -614 2699 2615 997 195 0 0 chr4 41612522 41612686 -142675976 - FAM SINE Alu -11 164 1 234 0 0 0 chr4 41612852 41612878 -142675784 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1713 163 14 0 chr4 41612881 41613158 -142675504 - AluSx SINE Alu -31 281 1 659 182 200 36 chr4 41613161 41613326 -142675336 - MIR SINE MIR -65 197 6 2297 87 37 0 chr4 41613857 41614157 -142674505 - AluSq SINE Alu -2 311 1 21 0 0 0 chr4 41614415 41614436 -142674226 + AT_rich Low_complexity Low_complexity 1 21 0 306 130 0 0 chr4 41620034 41620080 -142668582 + MIR SINE MIR 189 234 -28 371 253 4 29 chr4 41620146 41620250 -142668412 + MIR SINE MIR 20 128 -80 378 188 103 43 chr4 41620747 41620864 -142667798 - MIR SINE MIR -51 211 88 24 0 0 0 chr4 41620927 41620951 -142667711 + AT_rich Low_complexity Low_complexity 1 24 0 2183 108 0 0 chr4 41621473 41621769 -142666893 + AluSx SINE Alu 2 297 -15 25 31 0 0 chr4 41621772 41621804 -142666858 + AT_rich Low_complexity Low_complexity 1 32 0 28 0 0 0 chr4 41622177 41622205 -142666457 + AT_rich Low_complexity Low_complexity 1 28 0 1611 118 4 21 chr4 41622458 41622695 -142665967 - AluSg/x SINE Alu -8 302 70 1906 130 0 4 chr4 41622812 41623082 -142665580 + AluSq SINE Alu 25 293 -20 2870 217 36 16 chr4 41623087 41623837 -142664825 + L1M4 LINE L1 2397 3161 -2985 202 102 0 61 chr4 41623980 41624029 -142664633 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 2008 129 0 7 chr4 41624621 41624916 -142663746 - AluSx SINE Alu -19 293 1 2105 115 51 3 chr4 41624928 41625223 -142663439 - AluSx SINE Alu -3 309 1 267 340 62 0 chr4 41625875 41625972 -142662690 - MIR SINE MIR -71 137 35 1629 174 3 20 chr4 41626138 41626431 -142662231 - AluJo SINE Alu -24 288 1 2229 111 0 3 chr4 41626456 41626753 -142661909 - AluSx SINE Alu -14 298 3 1540 209 137 36 chr4 41626774 41627247 -142661415 - MER113 DNA MER1_type? 0 521 1 2553 63 3 0 chr4 41627316 41627616 -142661046 - AluSp SINE Alu -12 301 1 1625 147 26 15 chr4 41628183 41628448 -142660214 + AluJo SINE Alu 1 268 -44 2445 54 0 3 chr4 41629561 41629857 -142658805 - AluY SINE Alu -16 295 1 265 363 0 0 chr4 41629880 41629960 -142658702 + L2 LINE L2 3193 3272 0 726 220 174 18 chr4 41630061 41630279 -142658383 + MLT1J LTR MaLR 11 262 -249 292 323 10 31 chr4 41630370 41630466 -142658196 + MER5A DNA MER1_type 1 94 -95 188 306 188 24 chr4 41630403 41630488 -142658174 - MER5A DNA MER1_type -22 167 69 * 822 114 0 53 chr4 41630495 41630626 -142658036 + FLAM_C SINE Alu 2 125 -8 2162 101 0 0 chr4 41630637 41630924 -142657738 + AluSx SINE Alu 6 292 -20 22 0 0 0 chr4 41630931 41630953 -142657709 + AT_rich Low_complexity Low_complexity 1 22 0 733 179 0 30 chr4 41632598 41632732 -142655930 - FLAM_C SINE Alu -12 131 2 1518 193 7 11 chr4 41633021 41633301 -142655361 + AluJb SINE Alu 1 279 -33 438 243 36 50 chr4 41633399 41633539 -142655123 - MARNA DNA Mariner -378 208 71 777 195 0 0 chr4 41633604 41633722 -142654940 + AluJo/FLAM SINE Alu 1 118 -194 2463 85 0 0 chr4 41633722 41634029 -142654633 - AluY SINE Alu -4 307 1 24 0 0 0 chr4 41634038 41634062 -142654600 + AT_rich Low_complexity Low_complexity 1 24 0 1790 120 22 11 chr4 41634579 41634853 -142653809 - AluSg1 SINE Alu -5 304 28 2455 107 72 17 chr4 41635006 41635351 -142653311 + THE1B LTR MaLR 1 364 0 2144 107 3 17 chr4 41635450 41635749 -142652913 - AluSx SINE Alu -9 303 9 33 0 0 23 chr4 41636399 41636419 -142652243 + AT_rich Low_complexity Low_complexity 1 20 -23 2165 93 4 0 chr4 41636419 41636697 -142651965 - AluY SINE Alu -32 279 1 33 0 0 23 chr4 41636697 41636720 -142651942 + AT_rich Low_complexity Low_complexity 20 43 0 2264 201 7 21 chr4 41636982 41637522 -142651140 - MER77 LTR ERV1 -3 602 19 916 212 88 9 chr4 41637876 41638093 -142650569 + MIR SINE MIR 8 241 -21 2080 154 5 60 chr4 41638099 41638258 -142650404 + MER47A DNA MER2_type 4 170 -2153 2202 104 0 0 chr4 41638258 41638571 -142650091 + AluSg SINE Alu 1 313 0 2080 154 5 60 chr4 41638571 41638794 -142649868 + MER47A DNA MER2_type 170 366 0 544 175 41 6 chr4 41638845 41639016 -142649646 + (TA)n Simple_repeat Simple_repeat 2 178 0 273 57 0 0 chr4 41639035 41639070 -142649592 + (CA)n Simple_repeat Simple_repeat 2 36 0 279 0 0 0 chr4 41639212 41639243 -142649419 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2055 115 7 4 chr4 41639250 41639529 -142649133 - AluSq SINE Alu -33 280 1 801 181 8 0 chr4 41639853 41639986 -142648676 + AluSq/x SINE Alu 1 134 -179 29 47 0 0 chr4 41639986 41640029 -142648633 + AT_rich Low_complexity Low_complexity 1 43 0 1205 151 0 0 chr4 41640029 41640208 -142648454 + AluJb SINE Alu 118 296 -16 2121 113 0 3 chr4 41640338 41640641 -142648021 + AluSx SINE Alu 2 303 0 426 290 43 29 chr4 41640717 41640855 -142647807 + L2 LINE L2 2899 3038 -275 787 199 68 52 chr4 41640855 41641068 -142647594 + L1M4 LINE L1 3530 3749 -2397 2159 129 10 0 chr4 41641068 41641370 -142647292 + AluSx SINE Alu 1 305 -7 787 199 68 52 chr4 41641370 41641407 -142647255 + L1M4 LINE L1 3749 3784 -2362 2389 73 10 7 chr4 41641890 41642191 -142646471 + AluSp SINE Alu 1 302 -11 198 0 0 0 chr4 41642399 41642421 -142646241 + (GAATG)n Simple_repeat Simple_repeat 3 24 0 300 248 58 41 chr4 41643101 41643222 -142645440 + MIR SINE MIR 140 262 0 1356 220 77 34 chr4 41643225 41643575 -142645087 + MLT1A1 LTR MaLR 1 365 0 650 232 110 69 chr4 41643800 41643943 -142644719 - MIR SINE MIR 0 262 103 2053 107 0 182 chr4 41643943 41644355 -142644307 + MER1B DNA MER1_type 1 337 0 650 232 110 69 chr4 41644355 41644457 -142644205 - MIR SINE MIR -159 103 7 26 0 0 0 chr4 41645358 41645384 -142643278 + AT_rich Low_complexity Low_complexity 1 26 0 24883 26 2 0 chr4 41645384 41648951 -142639711 - L1PA3 LINE L1 0 6155 2586 2083 117 40 0 chr4 41649501 41649799 -142638863 - AluSx SINE Alu -2 310 1 662 320 79 37 chr4 41650271 41650599 -142638063 + L2 LINE L2 2369 2710 -604 616 305 67 22 chr4 41650605 41650874 -142637788 + L1MEc LINE L1 49 329 -6067 362 252 30 38 chr4 41650880 41651011 -142637651 - L1M4 LINE L1 -2259 3887 3758 2341 95 3 3 chr4 41651237 41651543 -142637119 + AluSp SINE Alu 1 306 -7 2129 160 30 0 chr4 41651546 41651883 -142636779 - MER7A DNA MER2_type 0 346 2 2403 94 0 0 chr4 41652080 41652379 -142636283 + AluSc SINE Alu 1 299 -10 216 184 0 0 chr4 41653015 41653064 -142635598 + (TA)n Simple_repeat Simple_repeat 2 50 0 654 303 61 17 chr4 41654457 41654688 -142633974 - MIR SINE MIR -2 260 20 2268 111 0 0 chr4 41654712 41655009 -142633653 + AluSx SINE Alu 1 297 -15 2198 88 30 0 chr4 41655108 41655404 -142633258 - AluSq SINE Alu -8 305 1 187 269 0 39 chr4 41655524 41655576 -142633086 + L2 LINE L2 3137 3186 -86 22 80 0 0 chr4 41655645 41655695 -142632967 + AT_rich Low_complexity Low_complexity 1 50 0 30 19 0 39 chr4 41655806 41655837 -142632825 + AT_rich Low_complexity Low_complexity 1 31 -19 757 167 18 0 chr4 41655837 41655951 -142632711 - FLAM_A SINE Alu -17 116 1 30 19 0 39 chr4 41655951 41655971 -142632691 + AT_rich Low_complexity Low_complexity 31 50 0 24 77 0 0 chr4 41656016 41656068 -142632594 + AT_rich Low_complexity Low_complexity 1 52 0 21 36 0 0 chr4 41656477 41656505 -142632157 + AT_rich Low_complexity Low_complexity 1 28 0 1851 176 0 10 chr4 41656916 41657228 -142631434 - AluJb SINE Alu -3 309 1 301 311 15 8 chr4 41657321 41657453 -142631209 + (TA)n Simple_repeat Simple_repeat 1 133 0 227 140 0 88 chr4 41657482 41657539 -142631123 + LTR66 LTR ERVL 390 441 -169 1223 174 7 51 chr4 41657580 41657874 -142630788 + L1MEc LINE L1 391 671 -5442 264 104 21 42 chr4 41657875 41657914 -142630748 - Alu SINE Alu -255 47 8 2263 116 3 0 chr4 41657914 41658217 -142630445 - AluSp SINE Alu -9 304 1 644 170 0 10 chr4 41658391 41658491 -142630171 - AluS SINE Alu -213 100 2 1878 174 3 0 chr4 41658577 41658887 -142629775 - AluJo SINE Alu -1 311 1 596 274 113 8 chr4 41658902 41659168 -142629494 + L1MEc LINE L1 2279 2572 -3643 4593 178 57 38 chr4 41659180 41659461 -142629201 + L1MB7 LINE L1 4224 4498 -1686 1536 137 78 19 chr4 41659461 41659717 -142628945 + AluJb SINE Alu 40 310 -2 1946 148 7 7 chr4 41659727 41660024 -142628638 + AluJo SINE Alu 1 297 -15 4593 178 57 38 chr4 41660024 41660707 -142627955 + L1MB7 LINE L1 4506 5175 -1009 2247 118 0 0 chr4 41660707 41661003 -142627659 + AluSx SINE Alu 1 296 -16 4593 178 57 38 chr4 41661003 41661906 -142626756 + L1MB7 LINE L1 5175 6128 -56 550 263 130 15 chr4 41661913 41662183 -142626479 + L1MEc LINE L1 2558 2858 -3357 994 204 15 0 chr4 41662193 41662389 -142626273 - AluJo SINE Alu -25 287 89 464 259 77 67 chr4 41662422 41662508 -142626154 + L1MEc LINE L1 2851 2935 -3280 2381 85 0 3 chr4 41662508 41662802 -142625860 - AluSq SINE Alu -20 293 1 464 259 77 67 chr4 41662802 41663028 -142625634 + L1MEc LINE L1 2935 3166 -3049 229 275 99 18 chr4 41664146 41664317 -142624345 + L1MEc LINE L1 3113 3297 -2918 1221 60 0 30 chr4 41664319 41664485 -142624177 + SVA Other Other 1226 1386 0 29 60 0 0 chr4 41664499 41664549 -142624113 + AT_rich Low_complexity Low_complexity 1 50 0 385 243 95 40 chr4 41664592 41664740 -142623922 + L1MEc LINE L1 3374 3529 -2686 312 250 101 101 chr4 41664790 41664958 -142623704 + L1MEc LINE L1 3551 3718 -2497 2307 101 0 10 chr4 41664967 41665275 -142623387 - AluSg SINE Alu -5 305 1 1155 239 173 12 chr4 41665275 41665610 -142623052 - L2 LINE L2 -891 2423 2035 417 259 130 6 chr4 41665626 41665788 -142622874 + LTR50 LTR ERVL 1 182 -613 231 202 30 111 chr4 41665955 41666054 -142622608 + LTR50 LTR ERVL 569 659 -136 520 187 0 19 chr4 41666102 41666209 -142622453 + L1MC5 LINE L1 7081 7185 -776 1466 209 120 38 chr4 41666315 41666864 -142621798 + L1MC5 LINE L1 7334 7927 -34 259 237 92 59 chr4 41666937 41667089 -142621573 - L2 LINE L2 -1670 1644 1488 498 308 167 0 chr4 41667272 41667493 -142621169 - MIR SINE MIR -3 259 2 28 29 0 0 chr4 41667929 41667964 -142620698 + AT_rich Low_complexity Low_complexity 1 35 0 215 247 141 0 chr4 41667989 41668074 -142620588 - MIR SINE MIR 0 262 166 420 316 46 13 chr4 41668165 41668317 -142620345 - MIR SINE MIR -89 173 17 25 31 0 0 chr4 41668443 41668475 -142620187 + AT_rich Low_complexity Low_complexity 1 32 0 822 272 25 8 chr4 41668476 41668715 -142619947 - MIR SINE MIR -7 255 13 602 344 47 0 chr4 41668903 41669115 -142619547 - MIR SINE MIR -3 259 38 2288 100 0 3 chr4 41669612 41669922 -142618740 + AluSx SINE Alu 1 309 -3 746 279 51 14 chr4 41670163 41670378 -142618284 - MIR SINE MIR -12 250 28 288 0 0 0 chr4 41670554 41670586 -142618076 + (TG)n Simple_repeat Simple_repeat 2 33 0 425 331 7 0 chr4 41670586 41670728 -142617934 + MIR SINE MIR 71 213 -49 198 0 0 0 chr4 41670865 41670887 -142617775 + (A)n Simple_repeat Simple_repeat 1 22 0 2073 127 10 0 chr4 41671719 41672010 -142616652 + AluSx SINE Alu 1 294 -18 1754 183 3 16 chr4 41672336 41672647 -142616015 - AluJo SINE Alu -5 307 1 441 246 44 19 chr4 41672783 41672977 -142615685 - MIR SINE MIR -19 243 37 325 213 222 0 chr4 41673471 41673579 -142615083 + L2 LINE L2 3182 3313 0 2357 70 13 0 chr4 41674264 41674562 -142614100 - AluSx SINE Alu -10 302 1 607 242 8 0 chr4 41674685 41674813 -142613849 - FLAM_A SINE Alu -4 129 1 741 243 60 0 chr4 41675078 41675263 -142613399 + MER58A DNA MER1_type 1 196 -28 1239 158 18 35 chr4 41675266 41675494 -142613168 + AluJb SINE Alu 69 292 -20 238 147 0 0 chr4 41675507 41675541 -142613121 + MER58A DNA MER1_type 191 224 0 441 237 42 17 chr4 41675585 41675703 -142612959 - MER45A DNA AcHobo 0 178 58 201 74 0 0 chr4 41676251 41676278 -142612384 + (TA)n Simple_repeat Simple_repeat 2 28 0 2086 105 34 7 chr4 41676616 41676910 -142611752 + AluSx SINE Alu 1 302 -10 1899 147 3 13 chr4 41677183 41677482 -142611180 - AluSx SINE Alu -16 296 1 188 294 207 26 chr4 41677631 41677816 -142610846 + L2 LINE L2 2482 2632 -681 188 200 25 0 chr4 41677816 41677856 -142610806 - L3 LINE CR1 -1144 433 393 188 294 207 26 chr4 41677856 41677992 -142610670 + L2 LINE L2 2632 2742 -571 2218 111 3 23 chr4 41677992 41678299 -142610363 - AluSx SINE Alu -11 301 1 188 294 207 26 chr4 41678299 41678579 -142610083 + L2 LINE L2 2742 3278 -35 183 270 40 40 chr4 41678702 41678776 -142609886 - L2 LINE L2 -3 3310 3237 2309 108 0 6 chr4 41679047 41679362 -142609300 + AluSq SINE Alu 1 313 0 323 270 81 63 chr4 41679791 41679902 -142608760 + L2 LINE L2 3156 3268 -4 2227 118 0 6 chr4 41679994 41680308 -142608354 + AluSx SINE Alu 1 312 0 24 77 0 0 chr4 41681705 41681757 -142606905 + GC_rich Low_complexity Low_complexity 1 52 0 2319 77 7 3 chr4 41682012 41682312 -142606350 - AluSx SINE Alu -11 301 1 1086 61 0 0 chr4 41682890 41683021 -142605641 + AluSg/x SINE Alu 176 306 -6 230 184 82 0 chr4 41683231 41683280 -142605382 - L2 LINE L2 -2 3270 3218 569 120 150 10 chr4 41683830 41683930 -142604732 - AluSc SINE Alu -14 295 182 885 120 0 0 chr4 41683930 41684047 -142604615 - AluSq/x SINE Alu -195 117 1 500 235 65 111 chr4 41684047 41684565 -142604097 + L2 LINE L2 2616 3111 -161 1978 237 51 16 chr4 41684713 41685207 -142603455 + MER77 LTR ERV1 78 588 -17 225 359 0 13 chr4 41685231 41685309 -142603353 + L2 LINE L2 3233 3309 -4 1134 127 5 99 chr4 41685556 41685611 -142603051 + AluJo SINE Alu 83 142 -170 2304 99 3 0 chr4 41685611 41685904 -142602758 + AluSx SINE Alu 1 294 -18 1134 127 5 99 chr4 41685904 41686069 -142602593 + AluJo SINE Alu 142 282 -30 207 100 0 0 chr4 41686072 41686102 -142602560 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 1476 131 0 0 chr4 41687121 41687335 -142601327 + AluSg SINE Alu 1 214 -96 2064 138 0 0 chr4 41687559 41687848 -142600814 + AluSx SINE Alu 1 289 -23 384 272 68 34 chr4 41688021 41688168 -142600494 + MIR SINE MIR 2 153 -109 27 29 0 0 chr4 41688238 41688272 -142600390 + AT_rich Low_complexity Low_complexity 1 34 0 210 307 13 0 chr4 41690282 41690357 -142598305 - MIR SINE MIR -10 252 177 660 266 121 94 chr4 41690394 41690486 -142598176 + L2 LINE L2 10 98 -3216 1780 120 116 0 chr4 41690486 41690753 -142597909 + AluSx SINE Alu 1 298 -14 1567 176 41 10 chr4 41690759 41691049 -142597613 + AluJo SINE Alu 1 299 -13 660 266 121 94 chr4 41691049 41691321 -142597341 + L2 LINE L2 102 391 -2923 3317 276 88 12 chr4 41691324 41692717 -142595945 + L2 LINE L2 1815 3313 0 521 238 79 8 chr4 41692718 41692844 -142595818 - MIR SINE MIR -100 162 28 2113 108 0 11 chr4 41693474 41693761 -142594901 - AluSx SINE Alu -2 310 27 855 157 0 15 chr4 41693778 41693912 -142594750 + FLAM_C SINE Alu 1 132 -1 203 363 0 25 chr4 41694081 41694161 -142594501 + L3 LINE CR1 1471 1548 -29 207 337 24 0 chr4 41694170 41694253 -142594409 - L3 LINE CR1 -11 1566 1482 237 329 57 7 chr4 41694516 41694656 -142594006 - L1MC/D LINE L1 -2289 5519 5373 495 235 7 46 chr4 41694704 41694744 -142593918 - Charlie2 DNA MER1_type 0 2862 2822 2259 118 0 0 chr4 41694744 41695040 -142593622 - AluSx SINE Alu -16 296 1 495 235 7 46 chr4 41695040 41695152 -142593510 - Charlie2 DNA MER1_type -40 2822 2716 * 577 202 119 41 chr4 41695127 41695345 -142593317 - Charlie2a DNA MER1_type -1163 1699 1465 434 148 0 11 chr4 41695401 41695489 -142593173 + (GGGA)n Simple_repeat Simple_repeat 4 90 0 557 180 98 0 chr4 41695567 41695689 -142592973 - Charlie2a DNA MER1_type -2553 309 176 352 299 103 0 chr4 41695702 41695819 -142592843 + MIR SINE MIR 133 261 -1 456 250 161 88 chr4 41695839 41696016 -142592646 - L1MC/D LINE L1 -798 5348 5185 2094 143 0 13 chr4 41696016 41696330 -142592332 + AluJb SINE Alu 1 310 -2 456 250 161 88 chr4 41696330 41696723 -142591939 - L1MC/D LINE L1 -961 5185 4736 272 232 218 35 chr4 41697061 41697203 -142591459 + MER112 DNA MER1_type 12 179 -81 6563 34 4 0 chr4 41697203 41697963 -142590699 - L1PA3 LINE L1 -14 6141 5379 598 123 9 61 chr4 41698013 41698127 -142590535 - L1MB8 LINE L1 -2 6176 6069 695 204 15 0 chr4 41698127 41698264 -142590398 - L1M4 LINE L1 -1158 4988 4850 722 153 368 0 chr4 41698272 41698435 -142590227 + AluJo SINE Alu 85 307 -5 334 187 11 110 chr4 41698440 41698531 -142590131 - L1M4 LINE L1 -1296 4850 4769 2433 74 3 0 chr4 41698558 41698854 -142589808 + AluSx SINE Alu 1 297 -15 262 272 0 29 chr4 41698854 41698957 -142589705 - L1M4 LINE L1 -2197 3949 3850 1064 284 33 20 chr4 41699133 41699540 -142589122 - HERV16 LTR ERVL -3536 1460 1083 970 243 187 29 chr4 41699540 41699989 -142588673 - MLT1E3 LTR MaLR 0 624 105 857 195 17 59 chr4 41699997 41700233 -142588429 - MLT1C LTR MaLR 0 467 242 1022 159 0 0 chr4 41700258 41700409 -142588253 - AluSg/x SINE Alu -28 284 134 2096 108 35 0 chr4 41700409 41700695 -142587967 - AluSq SINE Alu -17 296 1 29 0 0 0 chr4 41700765 41700794 -142587868 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr4 41701250 41701281 -142587381 + AT_rich Low_complexity Low_complexity 1 31 0 1138 69 0 14 chr4 41701748 41701893 -142586769 - AluSg/x SINE Alu -11 298 156 2078 112 41 0 chr4 41702160 41702454 -142586208 + AluSx SINE Alu 1 306 -6 186 231 0 0 chr4 41704538 41704577 -142584085 + MIR3 SINE MIR 157 195 -13 1926 150 0 25 chr4 41704688 41705002 -142583660 + AluJb SINE Alu 1 306 -6 1752 117 98 11 chr4 41705685 41705959 -142582703 + AluSx SINE Alu 1 298 -14 27 29 0 0 chr4 41707685 41707719 -142580943 + AT_rich Low_complexity Low_complexity 1 34 0 262 300 145 25 chr4 41708787 41709004 -142579658 + MIR SINE MIR 1 228 -34 25 0 0 0 chr4 41709289 41709314 -142579348 + AT_rich Low_complexity Low_complexity 1 25 0 471 217 67 67 chr4 41711062 41711256 -142577406 + MIR SINE MIR 57 256 -6 2053 135 3 3 chr4 41711526 41711830 -142576832 + AluJb SINE Alu 1 304 -8 1172 178 69 35 chr4 41711832 41712063 -142576599 - MER8 DNA MER2_type 0 239 1 742 149 0 0 chr4 41713290 41713397 -142575265 - FLAM_A SINE Alu -18 124 18 2072 117 7 7 chr4 41713577 41713886 -142574776 - AluSx SINE Alu -3 309 1 360 153 0 0 chr4 41713966 41714025 -142574637 + FLAM SINE Alu 73 131 -2 1013 139 6 0 chr4 41714211 41714377 -142574285 - FRAM SINE Alu -10 166 1 213 188 106 71 chr4 41714443 41714528 -142574134 + L2 LINE L2 3139 3226 -46 2107 99 3 3 chr4 41714785 41715089 -142573573 + AluSq SINE Alu 1 304 0 2079 90 14 0 chr4 41715368 41715656 -142573006 - AluSp SINE Alu -21 292 1 467 284 76 41 chr4 41715755 41715952 -142572710 + MIR SINE MIR 3 206 -56 572 271 64 0 chr4 41717560 41717700 -142570962 + MIR SINE MIR 2 150 -112 781 103 12 6 chr4 41718411 41718673 -142569989 + AluSq SINE Alu 1 312 -1 2956 192 28 49 chr4 41718881 41718987 -142569675 - L1MB7 LINE L1 -7 6177 6070 1840 153 0 10 chr4 41718987 41719275 -142569387 - AluJb SINE Alu -21 291 7 2956 192 28 49 chr4 41719275 41719856 -142568806 - L1MB7 LINE L1 -114 6070 5505 1518 127 116 15 chr4 41720864 41721131 -142567531 - AluSg SINE Alu -16 294 1 705 128 18 0 chr4 41721147 41721256 -142567406 - HY1 scRNA scRNA -1 111 1 639 228 85 38 chr4 41722094 41722305 -142566357 + MIR SINE MIR 31 251 -11 2160 133 36 30 chr4 41722312 41722674 -142565988 + THE1B LTR MaLR 1 364 0 244 233 17 17 chr4 41722980 41723040 -142565622 - MIR SINE MIR 0 262 203 576 197 8 39 chr4 41723042 41723169 -142565493 + L2 LINE L2 3191 3313 0 660 307 83 80 chr4 41723479 41724283 -142564379 + L3 LINE CR1 768 1574 -3 1303 201 3 98 chr4 41725277 41725595 -142563067 + AluJo SINE Alu 1 288 -14 2069 90 7 13 chr4 41725612 41725912 -142562750 + AluSq SINE Alu 5 302 -11 22 0 0 0 chr4 41726482 41726504 -142562158 + AT_rich Low_complexity Low_complexity 1 22 0 372 43 0 0 chr4 41726504 41726550 -142562112 + (CA)n Simple_repeat Simple_repeat 2 47 0 288 276 195 8 chr4 41727234 41727357 -142561305 + L2 LINE L2 3123 3268 -4 466 286 130 6 chr4 41728116 41728277 -142560385 + MIR3 SINE MIR 18 198 -10 966 210 80 5 chr4 41729046 41729420 -142559242 + MLT1D LTR MaLR 45 505 0 2336 54 7 0 chr4 41729489 41729784 -142558878 + AluY SINE Alu 3 299 -12 1867 144 0 3 chr4 41730686 41731003 -142557659 + AluSx SINE Alu 1 316 0 182 311 16 0 chr4 41731935 41731996 -142556666 + MIR3 SINE MIR 113 174 -34 1968 122 0 11 chr4 41732628 41732821 -142555841 - AluSx SINE Alu 0 326 136 2297 69 3 7 chr4 41732821 41733125 -142555537 - AluSc SINE Alu -6 303 1 1968 122 0 11 chr4 41733125 41733259 -142555403 - AluSx SINE Alu -190 136 2 201 333 118 20 chr4 41733420 41733522 -142555140 - L3 LINE CR1 -73 1504 1393 1100 139 0 0 chr4 41733568 41733734 -142554928 - FRAM SINE Alu -11 165 1 327 330 0 0 chr4 41733744 41733832 -142554830 - L3 LINE CR1 -199 1378 1291 202 256 0 0 chr4 41734040 41734079 -142554583 + MIR SINE MIR 223 261 -1 2322 91 0 0 chr4 41734149 41734456 -142554206 - AluSx SINE Alu -5 307 1 1841 141 0 3 chr4 41736161 41736471 -142552191 - AluSx SINE Alu 0 309 1 207 0 0 0 chr4 41736715 41736738 -142551924 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 342 346 43 39 chr4 41737874 41738082 -142550580 + L1ME4a LINE L1 5843 6051 -70 400 302 101 0 chr4 41738254 41738403 -142550259 - MIR SINE MIR -80 182 19 219 211 18 35 chr4 41738702 41738759 -142549903 - L2 LINE L2 -1 3271 3216 316 240 73 31 chr4 41739180 41739276 -142549386 + MIR SINE MIR 44 143 -65 243 0 0 0 chr4 41740080 41740107 -142548555 + (A)n Simple_repeat Simple_repeat 1 27 0 1781 163 13 0 chr4 41740772 41741073 -142547589 + AluSx SINE Alu 1 305 -7 495 211 0 0 chr4 41741126 41741221 -142547441 + U13 snRNA snRNA 1 95 -9 816 226 21 21 chr4 41741755 41741941 -142546721 - MER5A DNA MER1_type 0 189 4 891 173 64 0 chr4 41741941 41742114 -142546548 + AluJo SINE Alu 2 185 -127 347 161 86 49 chr4 41742121 41742202 -142546460 + MER69 DNA AcHobo 60 143 -1083 327 167 0 17 chr4 41742225 41742285 -142546377 + MER69 DNA AcHobo 2468 2526 0 251 320 160 28 chr4 41742586 41742767 -142545895 + MIR SINE MIR 51 255 -7 654 201 162 7 chr4 41742842 41742996 -142545666 - MER58A DNA MER1_type -1 223 46 1991 96 0 113 chr4 41743041 41743376 -142545286 + AluSx SINE Alu 1 297 -5 1598 205 18 71 chr4 41743917 41744366 -142544296 - L1ME LINE L1 -452 5714 5290 1056 218 120 0 chr4 41744365 41744631 -142544031 + L1ME1 LINE L1 5699 5996 -170 * 2117 137 3 0 chr4 41744943 41745250 -142543412 + AluSx SINE Alu 1 308 -4 306 0 0 0 chr4 41745810 41745844 -142542818 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1855 129 11 0 chr4 41745846 41746124 -142542538 - AluSc SINE Alu -28 281 1 2160 108 7 3 chr4 41746184 41746490 -142542172 - AluSx SINE Alu -5 307 1 410 273 137 19 chr4 41746589 41746750 -142541912 + MER5A DNA MER1_type 10 189 0 306 333 40 0 chr4 41746902 41747001 -142541661 - L2 LINE L2 -33 3239 3137 421 139 23 47 chr4 41747226 41747312 -142541350 - AluSg/x SINE Alu -12 298 215 1615 190 0 7 chr4 41749289 41749584 -142539078 - AluJb SINE Alu -19 293 1 892 288 73 55 chr4 41749863 41749981 -142538681 + L1MEd LINE L1 553 667 -5643 1974 86 60 20 chr4 41749981 41750282 -142538380 - AluSq SINE Alu 0 313 1 892 288 73 55 chr4 41750282 41750438 -142538224 + L1MEd LINE L1 667 819 -5491 775 197 0 0 chr4 41750438 41750565 -142538097 - FLAM_A SINE Alu -6 127 1 892 288 73 55 chr4 41750565 41751030 -142537632 + L1MEd LINE L1 819 1332 -4978 1998 166 37 6 chr4 41751030 41751379 -142537283 + MLT1A1 LTR MaLR 3 362 -3 892 288 73 55 chr4 41751379 41751684 -142536978 + L1MEd LINE L1 1332 1630 -4680 1475 196 29 7 chr4 41751712 41751988 -142536674 + AluJo SINE Alu 1 282 -30 1464 84 0 10 chr4 41751989 41752192 -142536470 + AluY SINE Alu 2 202 -109 328 325 72 6 chr4 41752482 41752648 -142536014 - MIR SINE MIR -67 195 19 1988 125 0 10 chr4 41752738 41753035 -142535627 + AluSx SINE Alu 1 294 -18 543 184 0 19 chr4 41753050 41753153 -142535509 + MLT1D LTR MaLR 84 184 -321 225 237 0 51 chr4 41753158 41753179 -142535483 + (TA)n Simple_repeat Simple_repeat 1 22 -34 1546 112 126 11 chr4 41753179 41753448 -142535214 + AluSx SINE Alu 1 300 -12 225 237 0 51 chr4 41753448 41753485 -142535177 + (TA)n Simple_repeat Simple_repeat 22 56 0 315 186 86 0 chr4 41753490 41753560 -142535102 - MLT1D LTR MaLR -429 76 1 252 288 123 46 chr4 41753657 41753876 -142534786 + MIR SINE MIR 18 253 -9 1230 158 37 46 chr4 41754577 41754818 -142533844 - AluJo SINE Alu -12 300 62 1228 126 0 0 chr4 41754938 41755128 -142533534 + AluSq SINE Alu 121 310 -3 757 280 69 13 chr4 41755367 41755599 -142533063 - MIR SINE MIR -10 252 8 1749 98 119 7 chr4 41755684 41755961 -142532701 - AluSx SINE Alu -4 308 1 4974 163 23 71 chr4 41756253 41757535 -142531127 - L1MB7 LINE L1 -16 6168 4973 2137 85 3 27 chr4 41758447 41758741 -142529921 + AluSg SINE Alu 3 289 -21 1884 134 17 0 chr4 41758750 41759041 -142529621 + AluSx SINE Alu 1 296 -16 388 230 140 0 chr4 41759584 41759684 -142528978 + L2 LINE L2 3195 3308 -5 295 227 7 39 chr4 41759685 41759697 -142528965 + GA-rich Low_complexity Low_complexity 2 13 -137 1822 177 3 3 chr4 41759697 41760007 -142528655 + AluSx SINE Alu 1 310 -2 295 227 7 39 chr4 41760007 41760148 -142528514 + GA-rich Low_complexity Low_complexity 13 150 0 2321 90 0 0 chr4 41760337 41760638 -142528024 - AluSq SINE Alu -12 301 1 453 279 42 79 chr4 41760671 41760742 -142527920 - L3 LINE CR1 -8 1569 1497 815 187 147 20 chr4 41760742 41760940 -142527722 - MER58A DNA MER1_type 0 224 2 453 279 42 79 chr4 41760940 41761108 -142527554 - L3 LINE CR1 -80 1497 1339 2033 231 72 23 chr4 41761234 41761800 -142526862 + L1MEc LINE L1 37 630 -5766 2115 79 0 39 chr4 41762016 41762321 -142526341 - AluSx SINE Alu -19 293 1 413 330 0 0 chr4 41762334 41762440 -142526222 - L1MEd LINE L1 -5448 671 566 450 0 0 0 chr4 41762791 41762841 -142525821 + (TTTTC)n Simple_repeat Simple_repeat 5 54 0 1882 125 38 3 chr4 41762863 41763151 -142525511 - AluSx SINE Alu -14 298 1 851 159 76 0 chr4 41763305 41763450 -142525212 + AluSg/x SINE Alu 138 293 -19 435 68 0 0 chr4 41763473 41763532 -142525130 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 21 0 0 0 chr4 41764134 41764155 -142524507 + AT_rich Low_complexity Low_complexity 1 21 0 302 301 148 22 chr4 41764162 41764213 -142524449 - MIR SINE MIR -5 257 214 2623 239 37 5 chr4 41764213 41764806 -142523856 + MER90 LTR ERV1 3 614 0 302 301 148 22 chr4 41764806 41764937 -142523725 - MIR SINE MIR -48 214 52 2078 117 3 17 chr4 41765492 41765811 -142522851 - AluSx SINE Alu 0 312 1 22 0 0 0 chr4 41765811 41765833 -142522829 + AT_rich Low_complexity Low_complexity 1 22 0 1988 151 0 7 chr4 41766274 41766573 -142522089 + AluJb SINE Alu 1 297 -15 591 111 11 0 chr4 41766611 41766701 -142521961 + MER53 DNA DNA 99 189 0 29 28 0 0 chr4 41766904 41766940 -142521722 + AT_rich Low_complexity Low_complexity 1 36 0 754 285 45 12 chr4 41767677 41767919 -142520743 + LTR33 LTR ERVL 38 287 -234 2136 125 0 22 chr4 41767921 41768240 -142520422 - AluSx SINE Alu 0 312 1 30 27 0 0 chr4 41768240 41768277 -142520385 + AT_rich Low_complexity Low_complexity 1 37 0 1803 156 11 7 chr4 41768307 41768590 -142520072 + AluJb SINE Alu 3 286 -26 1945 110 20 20 chr4 41768882 41769182 -142519480 + AluSp SINE Alu 14 313 0 254 210 32 0 chr4 41769362 41769424 -142519238 + L1MB7 LINE L1 5945 6008 -176 301 193 0 57 chr4 41769446 41769534 -142519128 - L2 LINE L2 -62 3251 3169 1086 322 163 47 chr4 41769841 41770814 -142517848 - L2 LINE L2 -558 2756 1898 2282 105 10 0 chr4 41770814 41771118 -142517544 + AluSx SINE Alu 1 307 -5 1086 322 163 47 chr4 41771118 41771299 -142517363 - L2 LINE L2 -1416 1898 1740 703 269 33 42 chr4 41771299 41771511 -142517151 - MER63A DNA MER1_type 0 210 1 1086 322 163 47 chr4 41771511 41771965 -142516697 - L2 LINE L2 -1574 1740 959 310 204 41 129 chr4 41771973 41772120 -142516542 - L3 LINE CR1 -393 1184 1051 369 62 0 0 chr4 41774430 41774478 -142514184 + (T)n Simple_repeat Simple_repeat 1 48 0 963 182 0 12 chr4 41774484 41774654 -142514008 - AluJo SINE Alu -144 168 1 410 289 0 26 chr4 41774654 41774768 -142513894 + MIR3 SINE MIR 50 160 -48 340 294 25 10 chr4 41774776 41774942 -142513720 + MIR SINE MIR 34 261 -1 441 74 12 25 chr4 41775326 41775407 -142513255 - AluSp SINE Alu -1 312 233 1832 95 4 0 chr4 41775451 41775683 -142512979 - AluSp SINE Alu -80 233 1 2388 117 11 25 chr4 41776062 41776327 -142512335 - MER47A DNA MER2_type -1957 366 106 2395 86 3 0 chr4 41776327 41776628 -142512034 - AluY SINE Alu -9 302 1 2388 117 11 25 chr4 41776628 41776729 -142511933 - MER47A DNA MER2_type -2217 106 5 1934 135 0 10 chr4 41776784 41777081 -142511581 + AluSx SINE Alu 18 311 -1 332 273 113 54 chr4 41777102 41777729 -142510933 + L1M4 LINE L1 3024 3687 -2459 1084 193 169 49 chr4 41777731 41778057 -142510605 + MLT1A1 LTR MaLR 1 365 0 530 320 49 0 chr4 41778064 41778311 -142510351 + L1M4 LINE L1 3692 3950 -2196 335 196 18 0 chr4 41778338 41778394 -142510268 + Tigger5 DNA MER2_type 2 58 -2265 * 977 109 0 0 chr4 41778392 41778530 -142510132 + Tigger5 DNA MER2_type 2058 2195 -128 1899 138 62 0 chr4 41778592 41778881 -142509781 + AluSq SINE Alu 1 307 -6 627 186 59 0 chr4 41778881 41778999 -142509663 + Tigger5 DNA MER2_type 2199 2323 0 2178 115 0 3 chr4 41779690 41779985 -142508677 + AluSx SINE Alu 1 294 -18 2340 111 0 0 chr4 41779998 41780304 -142508358 + AluSg SINE Alu 2 307 -3 909 100 23 8 chr4 41780310 41780440 -142508222 + AluSq/x SINE Alu 1 132 -181 4533 153 30 24 chr4 41780441 41781309 -142507353 + L1MB2 LINE L1 5299 6171 0 281 315 69 39 chr4 41781335 41781538 -142507124 + L2 LINE L2 2197 2405 -909 267 103 0 0 chr4 41781550 41781589 -142507073 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 4704 138 12 81 chr4 41781665 41781960 -142506702 - L1MB8 LINE L1 0 6178 5864 2309 114 0 0 chr4 41781960 41782266 -142506396 - AluSx SINE Alu -6 306 1 4704 138 12 81 chr4 41782266 41782868 -142505794 - L1MB8 LINE L1 -314 5864 5374 862 196 0 0 chr4 41782868 41783001 -142505661 - FLAM_C SINE Alu 0 133 1 4704 138 12 81 chr4 41783001 41783258 -142505404 - L1MB8 LINE L1 -804 5374 5101 722 152 0 0 chr4 41783261 41783366 -142505296 - FLAM_C SINE Alu -6 137 33 3412 209 23 25 chr4 41783372 41784089 -142504573 - L1MB8 LINE L1 -1047 5099 4383 1885 169 0 7 chr4 41784089 41784397 -142504265 - AluJb SINE Alu -6 306 1 3412 209 23 25 chr4 41784397 41784510 -142504152 - L1MB8 LINE L1 -1763 4383 4271 2292 95 16 0 chr4 41785047 41785351 -142503311 - AluSc SINE Alu 0 309 1 385 286 101 71 chr4 41785461 41785535 -142503127 - L1MEc LINE L1 -4143 2253 2183 1927 163 6 19 chr4 41785535 41785848 -142502814 - AluJb SINE Alu -3 309 1 385 286 101 71 chr4 41785848 41785859 -142502803 - L1MEc LINE L1 -4213 2183 2174 243 0 0 0 chr4 41785859 41785886 -142502776 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 1834 149 7 0 chr4 41785888 41786169 -142502493 - AluSx SINE Alu -29 283 1 385 286 101 71 chr4 41786169 41786415 -142502247 - L1MEc LINE L1 -4222 2174 1908 931 148 32 0 chr4 41786559 41786714 -142501948 - AluY SINE Alu -21 290 131 2235 161 66 2 chr4 41837992 41838401 -142450261 + L1MB7 LINE L1 5721 6155 -29 2823 81 43 28 chr4 41838414 41838785 -142449877 - L1PA14 LINE L1 -3 6158 5779 1925 125 0 78 chr4 41838785 41839120 -142449542 - AluSx SINE Alu -3 309 1 2823 81 43 28 chr4 41839120 41839145 -142449517 - L1PA14 LINE L1 -382 5779 5756 401 176 0 0 chr4 41839400 41839468 -142449194 - MLT1C LTR MaLR -2 503 436 1023 97 15 0 chr4 41839468 41839602 -142449060 + AluSq/x SINE Alu 1 136 -176 705 196 93 55 chr4 41839620 41839674 -142448988 - MLT1C LTR MaLR -51 416 365 2356 96 0 0 chr4 41839674 41839966 -142448696 + AluSx SINE Alu 1 292 -20 705 196 93 55 chr4 41839966 41840272 -142448390 - MLT1C LTR MaLR -102 365 6 525 315 87 8 chr4 41840865 41841106 -142447556 + Charlie8 DNA MER1_type 1 260 -2157 244 314 121 0 chr4 41841677 41841817 -142446845 + Tigger8 DNA MER2_type 331 487 -179 551 157 0 39 chr4 41841893 41841995 -142446667 + L1M3 LINE L1 5727 5824 -359 845 139 0 8 chr4 41841996 41842118 -142446544 + 5S rRNA rRNA 1 121 0 304 149 15 15 chr4 41842118 41842185 -142446477 + CT-rich Low_complexity Low_complexity 1 67 0 1463 141 86 112 chr4 41842854 41843158 -142445504 - AluJb SINE Alu -5 297 2 21 0 0 0 chr4 41843341 41843362 -142445300 + AT_rich Low_complexity Low_complexity 1 21 0 471 254 60 19 chr4 41844000 41844199 -142444463 + LTR33 LTR ERVL 1 193 -330 341 355 7 0 chr4 41844251 41844392 -142444270 + LTR33 LTR ERVL 299 440 -81 1629 203 61 81 chr4 41844456 41844757 -142443905 - MLT1C LTR MaLR 0 467 177 2321 102 0 7 chr4 41844757 41845061 -142443601 - AluSg SINE Alu -8 302 1 1629 203 61 81 chr4 41845061 41845231 -142443431 - MLT1C LTR MaLR -290 177 5 1468 160 36 59 chr4 41845943 41846250 -142442412 - AluJo SINE Alu -7 305 6 701 264 50 10 chr4 41846815 41847016 -142441646 - MIR SINE MIR -1 261 53 2030 130 3 40 chr4 41847139 41847463 -142441199 - AluJo SINE Alu 0 312 1 22 35 0 0 chr4 41847493 41847522 -142441140 + AT_rich Low_complexity Low_complexity 1 29 0 289 264 144 0 chr4 41847659 41847784 -142440878 - MER5A DNA MER1_type -3 186 44 2294 74 14 3 chr4 41847784 41848080 -142440582 + AluY SINE Alu 1 299 -12 213 222 60 120 chr4 41848080 41848100 -142440562 + MER5A DNA MER1_type 147 167 -22 2096 113 10 16 chr4 41848308 41848619 -142440043 + AluSc SINE Alu 1 309 0 261 139 0 0 chr4 41848626 41848669 -142439993 + (GGGA)n Simple_repeat Simple_repeat 2 44 0 1510 161 15 29 chr4 41848986 41849260 -142439402 + AluJo SINE Alu 17 286 -26 288 264 46 46 chr4 41849283 41849370 -142439292 - L2 LINE L2 -37 3276 3190 214 273 0 0 chr4 41849394 41849438 -142439224 + MER5A DNA MER1_type 30 73 -116 313 98 39 0 chr4 41849455 41849506 -142439156 + MER5A DNA MER1_type 52 104 -85 1619 146 55 29 chr4 41849722 41849841 -142438821 + AluJb SINE Alu 1 116 -192 516 105 0 0 chr4 41849841 41849917 -142438745 + (TG)n Simple_repeat Simple_repeat 2 77 0 1619 146 55 29 chr4 41849917 41850098 -142438564 + AluJb SINE Alu 116 308 0 282 215 25 63 chr4 41850240 41850319 -142438343 - MIR SINE MIR -87 175 100 2438 96 0 0 chr4 41851406 41851718 -142436944 + AluSx SINE Alu 1 312 0 1283 183 36 88 chr4 41852216 41852382 -142436280 - AluJo SINE Alu -22 290 146 1579 181 39 3 chr4 41852382 41852664 -142435998 - AluJb SINE Alu -15 297 6 1283 183 36 88 chr4 41852664 41852803 -142435859 - AluJo SINE Alu -166 146 1 3601 112 6 12 chr4 41853676 41854176 -142434486 + LOR1a LTR ERV1 1 497 0 5099 202 71 9 chr4 41854450 41855538 -142433124 + Charlie1a DNA MER1_type 52 1206 -249 760 154 8 0 chr4 41855532 41855649 -142433013 - Tigger7 DNA MER2_type -2102 385 268 * 499 323 34 78 chr4 41855869 41856163 -142432499 - L2 LINE L2 -6 3266 2986 247 204 37 0 chr4 41856163 41856217 -142432445 - L2 LINE L2 -13 3300 3245 343 196 125 45 chr4 41856412 41856524 -142432138 + MER3 DNA MER1_type 43 163 -46 1528 139 58 19 chr4 41856537 41856847 -142431815 + MER3 DNA MER1_type 2233 2554 0 487 270 172 30 chr4 41856847 41857030 -142431632 - MER20B DNA MER1_type -459 324 109 373 104 15 15 chr4 41857052 41857119 -142431543 + MER3 DNA MER1_type 2549 2615 0 1027 116 7 0 chr4 41857166 41857304 -142431358 + AluSg SINE Alu 1 139 -171 327 104 0 0 chr4 41857631 41857679 -142430983 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 1287 258 73 20 chr4 41858113 41858724 -142429938 - MER20B DNA MER1_type -10 773 83 248 358 47 37 chr4 41858813 41859003 -142429659 + MIR SINE MIR 66 257 -5 1492 174 94 14 chr4 41859004 41859280 -142429382 + AluJo SINE Alu 1 298 -14 196 171 29 0 chr4 41859388 41859423 -142429239 + L2 LINE L2 3265 3300 -13 216 304 63 0 chr4 41859753 41859832 -142428830 + MIR3 SINE MIR 114 197 -11 * 782 231 15 31 chr4 41859830 41860025 -142428637 - MIR SINE MIR -10 252 61 1756 76 0 0 chr4 41860784 41860995 -142427667 + AluSq SINE Alu 1 211 -102 3923 105 0 4 chr4 41860995 41861508 -142427154 + MER9 LTR ERVK 1 511 0 647 148 0 9 chr4 41861508 41861616 -142427046 + AluSq SINE Alu 206 312 -1 181 277 21 0 chr4 41861992 41862039 -142426623 - L2 LINE L2 0 3313 3266 249 340 69 21 chr4 41862618 41862762 -142425900 - L2 LINE L2 -557 2757 2607 2218 132 0 87 chr4 41862869 41863248 -142425414 - MER7A DNA MER2_type -1 345 2 297 0 0 0 chr4 41863763 41863796 -142424866 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 1814 111 0 23 chr4 41863801 41864062 -142424600 - AluSq SINE Alu -36 277 23 364 189 14 0 chr4 41864695 41864769 -142423893 - MER116 DNA Mariner 0 80 6 506 138 85 0 chr4 41864802 41864896 -142423766 - MER58 DNA MER1_type -1 2419 2318 379 253 88 0 chr4 41864908 41864999 -142423663 - MER58 DNA MER1_type -2321 99 1 2007 131 0 0 chr4 41865284 41865558 -142423104 - AluJb SINE Alu -12 300 27 * 2238 76 0 70 chr4 41865556 41865884 -142422778 - AluY SINE Alu -6 305 1 1641 171 4 11 chr4 41866305 41866585 -142422077 - AluJo SINE Alu -34 278 1 420 237 112 20 chr4 41867386 41867538 -142421124 + MIR SINE MIR 96 261 -1 231 314 92 72 chr4 41867602 41867809 -142420853 - L2 LINE L2 -18 3254 3044 552 101 0 0 chr4 41869126 41869205 -142419457 + HERV9 LTR ERV1 4866 4944 -3455 2098 151 104 126 chr4 41869206 41870106 -142418556 + HERV9 LTR ERV1 840 1720 -5176 * 4636 94 13 2 chr4 41870101 41870737 -142417925 + HERV9 LTR ERV1 7757 8399 0 6017 78 71 20 chr4 41870737 41871523 -142417139 + LTR12 LTR ERV1 1 826 0 636 235 16 71 chr4 41871553 41871736 -142416926 - MER5B DNA MER1_type -5 173 1 281 244 11 44 chr4 41872031 41872121 -142416541 + L2 LINE L2 3223 3309 -4 259 116 0 0 chr4 41872765 41872808 -142415854 - L1MB7 LINE L1 0 6184 6142 5509 183 11 3 chr4 41872808 41873843 -142414819 + L1P LINE L1 4228 5270 -876 604 263 19 44 chr4 41873857 41874062 -142414600 + LTR4 LTR ERV1 1 200 -396 256 224 41 0 chr4 41874119 41874168 -142414494 + LTR4 LTR ERV1 307 357 -239 942 209 20 65 chr4 41874254 41874546 -142414116 + LTR4 LTR ERV1 317 595 -1 1283 71 142 27 chr4 41874547 41874772 -142413890 + L1P4 LINE L1 5268 5518 -643 1918 130 7 7 chr4 41874934 41875226 -142413436 - AluSc SINE Alu -17 292 1 2085 116 0 7 chr4 41876284 41876604 -142412058 - AluSx SINE Alu 0 318 1 1192 171 198 53 chr4 41876904 41877278 -142411384 + MSTC LTR MaLR 1 428 0 258 331 35 125 chr4 41877585 41877872 -142410790 - L2 LINE L2 0 3272 3012 181 250 0 0 chr4 41878011 41878047 -142410615 + MIR SINE MIR 39 74 -134 610 244 187 14 chr4 41878479 41878688 -142409974 - MIR SINE MIR 0 262 18 209 152 0 43 chr4 41879659 41879705 -142408957 + (CATATA)n Simple_repeat Simple_repeat 3 46 0 458 233 90 63 chr4 41879878 41880101 -142408561 - MARNA DNA Mariner -343 243 15 340 264 95 27 chr4 41880483 41880631 -142408031 + L1MC4a LINE L1 5731 5888 -1920 553 213 90 13 chr4 41880690 41880845 -142407817 - L1MC5 LINE L1 -51 7910 7744 40 37 0 0 chr4 41880962 41881016 -142407646 + AT_rich Low_complexity Low_complexity 1 54 0 1835 108 4 16 chr4 41881016 41881274 -142407388 - AluSg SINE Alu -12 298 44 1939 132 7 3 chr4 41881276 41881564 -142407098 - AluSx SINE Alu -18 294 6 1513 144 76 47 chr4 41881713 41881990 -142406672 - AluJo SINE Alu -24 288 4 23 33 0 0 chr4 41885757 41885787 -142402875 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 41886158 41886186 -142402476 + AT_rich Low_complexity Low_complexity 1 28 0 2290 71 41 0 chr4 41886218 41886512 -142402150 + AluSp SINE Alu 1 306 -7 2156 177 18 13 chr4 41886630 41887015 -142401647 + LOR1b LTR ERV1 75 461 0 289 196 54 0 chr4 41887017 41887073 -142401589 - L1M4 LINE L1 -519 5665 5607 375 23 0 0 chr4 41887119 41887163 -142401499 + (TA)n Simple_repeat Simple_repeat 1 44 0 1013 175 22 0 chr4 41887163 41887346 -142401316 - L1M4 LINE L1 -579 5599 5413 265 250 138 0 chr4 41887437 41887517 -142401145 - L2 LINE L2 -2 3311 3221 457 223 11 0 chr4 41887887 41887981 -142400681 - L2 LINE L2 0 3313 3219 895 287 151 31 chr4 41888028 41888453 -142400209 + MLT1K LTR MaLR 1 476 0 652 125 0 0 chr4 41889368 41889472 -142399190 + L1MA8 LINE L1 6186 6289 -2 2263 102 0 0 chr4 41889632 41889926 -142398736 + AluY SINE Alu 1 294 -17 1059 165 41 18 chr4 41890151 41890321 -142398341 - FAM SINE Alu -1 174 1 296 276 117 37 chr4 41890420 41890583 -142398079 - MARNA DNA Mariner -286 300 125 180 241 37 0 chr4 41890610 41890664 -142397998 - L2 LINE L2 -225 3047 2992 2214 117 0 0 chr4 41890700 41891017 -142397645 + AluSx SINE Alu 1 317 0 2714 26 3 0 chr4 41892532 41892840 -142395822 - AluY SINE Alu -2 309 1 342 0 0 0 chr4 41893342 41893380 -142395282 + (CA)n Simple_repeat Simple_repeat 1 38 0 722 306 115 21 chr4 41893528 41894057 -142394605 + L1MC4a LINE L1 5254 5832 -1976 2264 112 0 0 chr4 41894086 41894382 -142394280 - AluSx SINE Alu -16 296 1 525 233 267 0 chr4 41894694 41894904 -142393758 + L1ME3A LINE L1 5904 6169 -1 1331 126 36 22 chr4 41895425 41895647 -142393015 - MER2 DNA MER2_type 0 345 121 709 190 92 7 chr4 41895649 41895791 -142392871 + AluJo SINE Alu 4 157 -155 749 154 7 44 chr4 41895891 41896027 -142392635 + FRAM SINE Alu 43 173 -3 490 184 156 7 chr4 41896857 41896998 -142391664 - L1ME3A LINE L1 -5 6165 6004 487 355 47 41 chr4 41897071 41897389 -142391273 - L2 LINE L2 -5 3267 2948 266 292 242 8 chr4 41897450 41897690 -142390972 - L2 LINE L2 -469 2845 2550 2315 90 3 7 chr4 41897846 41898145 -142390517 + AluSp SINE Alu 10 307 -6 298 301 0 21 chr4 41898435 41898528 -142390134 - L2 LINE L2 -1366 1948 1858 1390 127 122 21 chr4 41898788 41899025 -142389637 - Tigger7 DNA MER2_type 0 2491 2231 2464 85 0 0 chr4 41899498 41899803 -142388859 - AluSc SINE Alu -4 305 1 180 305 189 37 chr4 41901389 41901579 -142387083 + L2 LINE L2 3080 3298 -15 254 250 42 0 chr4 41901586 41901658 -142387004 - MIR SINE MIR -8 254 180 333 0 0 0 chr4 41901757 41901794 -142386868 + (CA)n Simple_repeat Simple_repeat 2 38 0 1770 127 20 38 chr4 41902764 41903056 -142385606 + AluJo SINE Alu 5 291 -21 2023 143 10 0 chr4 41903322 41903616 -142385046 - AluSq SINE Alu -16 297 1 26 30 0 0 chr4 41904520 41904553 -142384109 + AT_rich Low_complexity Low_complexity 1 33 0 233 255 122 20 chr4 41905020 41905118 -142383544 + MIR3 SINE MIR 78 185 -23 1683 205 106 133 chr4 41905305 41905967 -142382695 + MLT1E1 LTR MaLR 11 654 0 2073 128 0 3 chr4 41906029 41906327 -142382335 - AluSx SINE Alu -15 297 1 429 294 51 34 chr4 41906883 41907060 -142381602 + MER5A DNA MER1_type 7 186 -3 190 379 105 0 chr4 41907067 41907162 -142381500 - MIR3 SINE MIR -48 160 56 1650 107 94 4 chr4 41907162 41907395 -142381267 + AluSc SINE Alu 37 290 -19 433 222 62 0 chr4 41907826 41907907 -142380755 + AluJ/FLAM SINE Alu 2 87 -225 2284 119 3 0 chr4 41907907 41908218 -142380444 + AluSq SINE Alu 1 312 -1 1100 123 0 6 chr4 41908218 41908397 -142380265 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 507 45 0 0 chr4 41908401 41908467 -142380195 + (GAAA)n Simple_repeat Simple_repeat 2 67 0 1515 130 18 80 chr4 41908528 41908804 -142379858 + AluJb SINE Alu 39 297 -15 809 240 138 22 chr4 41909055 41909280 -142379382 - MIR SINE MIR -6 256 6 1857 155 3 0 chr4 41909584 41909874 -142378788 - AluSx SINE Alu -16 296 6 21 0 0 0 chr4 41910733 41910754 -142377908 + AT_rich Low_complexity Low_complexity 1 21 0 1850 151 28 0 chr4 41910932 41911216 -142377446 - AluJb SINE Alu -20 292 1 27 73 0 0 chr4 41911299 41911354 -142377308 + AT_rich Low_complexity Low_complexity 1 55 0 203 359 75 0 chr4 41913822 41913928 -142374734 + L3 LINE CR1 1458 1571 -6 180 333 119 0 chr4 41913986 41914070 -142374592 + MIR SINE MIR 104 197 -65 334 159 0 16 chr4 41914355 41914418 -142374244 + AluS SINE Alu 1 62 -241 2218 104 7 3 chr4 41915095 41915394 -142373268 - AluSc SINE Alu -9 300 1 601 245 187 98 chr4 41915518 41915995 -142372667 + MLT1H LTR MaLR 21 539 -10 596 227 81 10 chr4 41916313 41916511 -142372151 + L1ME4a LINE L1 5704 5915 -206 1643 211 142 56 chr4 41916891 41917582 -142371080 - L1MC5 LINE L1 -435 7526 6777 573 311 90 43 chr4 41917587 41918141 -142370521 - HAL1b LINE L1 -708 640 61 2432 79 3 0 chr4 41918392 41918696 -142369966 - AluY SINE Alu -5 306 2 352 246 205 33 chr4 41918834 41918956 -142369706 + L2 LINE L2 3152 3294 -19 292 279 52 26 chr4 41918962 41919116 -142369546 + L1ME4a LINE L1 5963 6120 -1 420 352 61 12 chr4 41920582 41920829 -142367833 - MIR SINE MIR -3 259 1 1027 169 47 59 chr4 41921252 41921488 -142367174 + MER46A DNA MER2_type 4 236 0 494 290 68 12 chr4 41921510 41921672 -142366990 - MIR SINE MIR -28 234 64 6432 66 27 23 chr4 41921745 41923239 -142365423 + SVA Other Other 3 1386 0 283 255 21 32 chr4 41923416 41923510 -142365152 - MIR SINE MIR -55 207 115 255 172 17 52 chr4 41923797 41923855 -142364807 + GA-rich Low_complexity Low_complexity 5 60 0 185 282 0 70 chr4 41924542 41924613 -142364049 + L2 LINE L2 3009 3074 -198 723 323 47 0 chr4 41924904 41925136 -142363526 + MIR SINE MIR 18 260 -2 781 173 0 15 chr4 41925191 41925313 -142363349 + FLAM_C SINE Alu 2 123 -189 324 0 0 0 chr4 41925313 41925349 -142363313 + (CATA)n Simple_repeat Simple_repeat 2 37 0 2138 108 20 3 chr4 41925863 41926169 -142362493 - AluSx SINE Alu -1 311 1 516 232 128 97 chr4 41927101 41927616 -142361046 - MLT1L LTR MaLR -19 492 7 537 310 132 31 chr4 41927955 41928534 -142360128 + L2 LINE L2 2622 3264 -49 798 224 101 32 chr4 41928771 41928990 -142359672 + MIR SINE MIR 14 247 -15 2031 85 52 4 chr4 41929015 41929336 -142359326 + AluSq SINE Alu 1 334 0 1904 92 0 0 chr4 41929567 41929807 -142358855 + AluSq SINE Alu 59 298 -15 328 91 0 0 chr4 41931277 41931321 -142357341 - Alu SINE Alu -259 44 1 21 57 0 0 chr4 41932020 41932055 -142356607 + AT_rich Low_complexity Low_complexity 1 35 0 2293 89 0 26 chr4 41932117 41932430 -142356232 + AluSx SINE Alu 1 305 -7 199 316 137 34 chr4 41933571 41933688 -142354974 + MIR SINE MIR 63 191 -71 1397 162 3 114 chr4 41934525 41934858 -142353804 + AluJo SINE Alu 1 296 -16 1713 63 0 0 chr4 41935330 41935535 -142353127 - AluY SINE Alu -14 297 93 1412 183 60 7 chr4 41935585 41935869 -142352793 + AluJb SINE Alu 1 299 -13 26 30 0 0 chr4 41936000 41936033 -142352629 + AT_rich Low_complexity Low_complexity 1 33 0 2391 280 168 57 chr4 41936985 41937727 -142350935 + HAL1 LINE L1 307 965 -1542 1485 181 3 35 chr4 41937727 41938009 -142350653 - AluJo SINE Alu -17 295 23 2391 280 168 57 chr4 41938009 41939149 -142349513 + HAL1 LINE L1 965 2398 -109 676 273 76 98 chr4 41939652 41940191 -142348471 + LTR67 LTR ERVL 31 557 0 2420 84 0 0 chr4 41940386 41940683 -142347979 - AluSc SINE Alu -12 297 1 1419 109 0 0 chr4 41941535 41941727 -142346935 - AluSq SINE Alu -8 305 114 583 85 110 0 chr4 41941764 41941846 -142346816 - AluSq SINE Alu -179 134 44 264 100 0 0 chr4 41942095 41942135 -142346527 + (TG)n Simple_repeat Simple_repeat 2 41 0 689 176 0 25 chr4 41943401 41943520 -142345142 - FRAM SINE Alu -6 170 55 314 238 67 30 chr4 41943570 41943710 -142344952 + L1ME LINE L1 5677 5822 -299 2030 112 0 11 chr4 41943718 41944004 -142344658 + AluY SINE Alu 1 283 -28 2391 91 3 0 chr4 41944246 41944553 -142344109 + AluSc SINE Alu 1 308 -1 271 209 60 0 chr4 41944645 41944712 -142343950 - HsTC2 DNA Tc2 -3 1895 1825 433 243 9 9 chr4 41944757 41944864 -142343798 - MER104 DNA Tc2 -72 108 2 2244 123 3 0 chr4 41944981 41945290 -142343372 + AluSp SINE Alu 1 310 -3 832 123 0 0 chr4 41945446 41945552 -142343110 + U6 snRNA snRNA 2 107 0 283 191 58 14 chr4 41945552 41945638 -142343024 + L1MA9 LINE L1 6213 6291 0 2408 93 0 3 chr4 41945807 41946108 -142342554 + AluY SINE Alu 1 300 -11 4587 199 44 11 chr4 41946695 41947759 -142340903 + L1 LINE L1 3148 4251 -1895 198 0 0 0 chr4 41947759 41947781 -142340881 + (CA)n Simple_repeat Simple_repeat 1 22 0 4587 199 44 11 chr4 41947781 41947815 -142340847 + L1 LINE L1 4251 4282 -1864 944 206 0 0 chr4 41947826 41947991 -142340671 + FRAM SINE Alu 1 165 -11 485 270 103 0 chr4 41948005 41948131 -142340531 + L1 LINE L1 4497 4635 -1511 1782 174 7 3 chr4 41948263 41948561 -142340101 - AluSx SINE Alu -13 299 1 359 293 72 44 chr4 41948886 41949067 -142339595 - MIR3 SINE MIR -2 206 21 1368 145 30 34 chr4 41950048 41950283 -142338379 - MER46A DNA MER2_type -1 235 2 230 307 148 0 chr4 41950445 41950533 -142338129 - MIR SINE MIR -108 154 54 607 240 16 0 chr4 41951474 41951603 -142337059 + MER94 DNA DNA 1 131 -3 351 300 0 10 chr4 41952413 41952513 -142336149 + L2 LINE L2 3174 3272 0 244 242 0 45 chr4 41952708 41952774 -142335888 + MIR SINE MIR 85 147 -115 1859 264 124 25 chr4 41952883 41952994 -142335668 + L1MC4 LINE L1 6905 7004 -1038 1861 177 0 3 chr4 41952994 41953288 -142335374 + AluSx SINE Alu 1 293 -19 1859 264 124 25 chr4 41953288 41954080 -142334582 + L1MC4 LINE L1 7004 7897 -145 797 179 19 56 chr4 41955091 41955253 -142333409 + FRAM SINE Alu 6 161 -15 1298 81 0 0 chr4 41955262 41955423 -142333239 - AluSc SINE Alu -17 292 132 2351 99 0 6 chr4 41955423 41955735 -142332927 - AluY SINE Alu -1 310 1 241 293 49 0 chr4 41955767 41955849 -142332813 - MIR SINE MIR -105 157 72 208 174 87 22 chr4 41956175 41956221 -142332441 + L2 LINE L2 3219 3267 -5 2254 107 0 3 chr4 41956288 41956586 -142332076 + AluSg SINE Alu 1 297 -13 3631 143 8 9 chr4 41956738 41957264 -142331398 - MER1A DNA MER1_type 0 527 3 542 198 0 0 chr4 41957320 41957416 -142331246 - MER5A DNA MER1_type -83 106 11 2291 90 3 0 chr4 41958673 41958963 -142329699 + AluSg SINE Alu 1 291 -19 304 75 0 0 chr4 41959366 41959406 -142329256 - L1P LINE L1 -1916 4230 4191 957 98 0 15 chr4 41959413 41959546 -142329116 + L1P LINE L1 4103 4233 -1913 284 271 13 33 chr4 41959619 41959770 -142328892 + L1MC5 LINE L1 7607 7754 -207 2160 91 3 52 chr4 41959772 41959907 -142328755 + AluSq SINE Alu 1 141 -172 786 96 29 0 chr4 41959907 41960011 -142328651 + U6 snRNA snRNA 1 107 0 13036 80 14 2 chr4 41960014 41962439 -142326223 + L1PA7 LINE L1 3715 6151 -3 2160 91 3 52 chr4 41962439 41962608 -142326054 + AluSq SINE Alu 143 294 -19 230 376 8 36 chr4 41962852 41963099 -142325563 + L2 LINE L2 2872 3111 -161 522 295 44 57 chr4 41963142 41963233 -142325429 - MIR SINE MIR -11 251 160 2388 91 0 0 chr4 41963233 41963556 -142325106 - AluSg SINE Alu 0 323 1 522 295 44 57 chr4 41963556 41963690 -142324972 - MIR SINE MIR -102 160 28 226 296 45 11 chr4 41963777 41963865 -142324797 - L2 LINE L2 -9 3263 3173 1583 168 16 29 chr4 41963890 41964206 -142324456 + AluJb SINE Alu 1 312 0 269 238 24 103 chr4 41964297 41964423 -142324239 + MIR SINE MIR 74 189 -73 594 179 140 39 chr4 41964658 41964823 -142323839 + L1MC2 LINE L1 6143 6329 -15 1661 168 11 3 chr4 41964823 41965108 -142323554 + AluJb SINE Alu 1 287 -25 594 179 140 39 chr4 41965108 41965121 -142323541 + L1MC2 LINE L1 6329 6339 -5 249 265 0 29 chr4 41965140 41965208 -142323454 - MARNA DNA Mariner -363 223 158 180 0 0 0 chr4 41965489 41965509 -142323153 + (A)n Simple_repeat Simple_repeat 1 20 0 221 261 62 93 chr4 41965951 41966112 -142322550 - MIR SINE MIR -73 189 34 231 298 106 0 chr4 41967543 41967647 -142321015 + LTR33 LTR ERVL 25 139 -382 250 239 46 39 chr4 41967684 41967814 -142320848 + LTR33 LTR ERVL 303 433 -88 378 61 0 0 chr4 41967860 41967909 -142320753 + (TG)n Simple_repeat Simple_repeat 2 50 0 1569 169 14 11 chr4 41967910 41968189 -142320473 - AluJb SINE Alu -29 283 4 23 33 0 0 chr4 41968304 41968334 -142320328 + AT_rich Low_complexity Low_complexity 1 30 0 205 336 32 24 chr4 41968343 41968468 -142320194 + L2 LINE L2 2633 2758 -556 471 303 123 28 chr4 41968707 41969264 -142319398 + L2 LINE L2 2690 3313 0 2063 110 39 0 chr4 41969516 41969798 -142318864 + AluSx SINE Alu 1 293 -19 192 40 0 0 chr4 41969802 41969827 -142318835 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 357 214 34 11 chr4 41969877 41969966 -142318696 - MER58B DNA MER1_type -19 322 232 930 173 9 68 chr4 41970063 41970174 -142318488 - MER58B DNA MER1_type -134 207 113 2138 51 44 14 chr4 41970174 41970476 -142318186 - AluY SINE Alu 0 310 1 930 173 9 68 chr4 41970476 41970583 -142318079 - MER58B DNA MER1_type -228 113 1 1808 148 3 14 chr4 41972064 41972347 -142316315 + AluJo SINE Alu 1 280 -32 1825 113 63 121 chr4 41972549 41972963 -142315699 - MLT1B LTR MaLR 0 390 1 622 160 0 8 chr4 41973539 41973664 -142314998 + L1 LINE L1 5207 5330 -816 735 93 0 0 chr4 41973665 41973762 -142314900 + AluS SINE Alu 1 97 -215 2194 133 0 0 chr4 41973764 41974073 -142314589 + AluSx SINE Alu 1 309 -3 2056 115 19 0 chr4 41974073 41974394 -142314268 + L1P4 LINE L1 5332 5658 -508 542 248 39 0 chr4 41974574 41974703 -142313959 - L2 LINE L2 0 3313 3180 340 299 49 60 chr4 41975020 41975204 -142313458 + L2 LINE L2 3072 3253 -19 887 254 42 121 chr4 41975642 41976123 -142312539 - L2 LINE L2 0 3313 2871 761 246 84 24 chr4 41976335 41976632 -142312030 + L2 LINE L2 2565 2879 -435 449 247 84 13 chr4 41977021 41977267 -142311395 + Charlie8 DNA MER1_type 53 1417 -1000 202 211 0 0 chr4 41977414 41977452 -142311210 + (CATA)n Simple_repeat Simple_repeat 3 40 0 2242 106 0 0 chr4 41977724 41978053 -142310609 + AluSx SINE Alu 1 312 0 1062 185 13 53 chr4 41979941 41980168 -142308494 - AluJo SINE Alu -10 302 85 261 317 141 28 chr4 41980308 41980450 -142308212 + MIR SINE MIR 34 191 -71 198 0 0 0 chr4 41980912 41980934 -142307728 + (A)n Simple_repeat Simple_repeat 1 22 0 781 154 0 31 chr4 41981581 41981711 -142306951 - FLAM_A SINE Alu -6 127 2 793 225 56 123 chr4 41983378 41983675 -142304987 + L1MC2 LINE L1 4766 5023 -1123 1624 138 16 0 chr4 41983675 41983922 -142304740 + AluY SINE Alu 47 297 -14 793 225 56 123 chr4 41983922 41984087 -142304575 + L1MC2 LINE L1 5023 5197 -949 614 164 216 0 chr4 41984165 41984336 -142304326 + L1MC2 LINE L1 5176 5383 -763 1066 232 49 42 chr4 41984490 41984942 -142303720 + L1M4 LINE L1 4149 4603 -1543 760 215 40 4 chr4 41984940 41985168 -142303494 + L1M4 LINE L1 3821 4056 -2090 * 2875 155 63 15 chr4 41985161 41985775 -142302887 + L1MC2 LINE L1 5648 6291 -53 3170 148 6 11 chr4 41986322 41986848 -142301814 + MER1A DNA MER1_type 7 529 0 300 200 0 0 chr4 41987047 41987117 -142301545 + (TG)n Simple_repeat Simple_repeat 1 70 0 412 288 86 58 chr4 41987150 41987335 -142301327 - MLT1K LTR MaLR -156 432 254 2116 132 42 31 chr4 41987335 41987691 -142300971 - THE1B LTR MaLR -4 360 1 412 288 86 58 chr4 41987691 41987848 -142300814 - MLT1K LTR MaLR -334 254 10 254 172 16 47 chr4 41988462 41988526 -142300136 + GA-rich Low_complexity Low_complexity 2 63 0 286 240 251 17 chr4 41990035 41990214 -142298448 + L1ME4a LINE L1 5879 6099 -22 1692 197 0 9 chr4 41990561 41990876 -142297786 + AluJb SINE Alu 1 312 0 260 252 108 45 chr4 41991028 41991139 -142297523 - MIR3 SINE MIR -89 119 2 1217 167 5 51 chr4 41991633 41991778 -142296884 + AluJo SINE Alu 2 135 -177 1981 146 7 0 chr4 41991778 41992073 -142296589 + AluSx SINE Alu 11 307 -5 1217 167 5 51 chr4 41992073 41992142 -142296520 + AluJo SINE Alu 135 206 -106 250 242 0 45 chr4 41992336 41992402 -142296260 + MIR SINE MIR 85 147 -115 1811 84 0 0 chr4 41992942 41993167 -142295495 + AluSg/x SINE Alu 73 297 -13 2332 90 3 3 chr4 41994033 41994332 -142294330 + AluSp SINE Alu 1 299 -14 207 191 0 191 chr4 41994332 41994426 -142294236 - MIR SINE MIR -181 81 6 679 106 8 8 chr4 41994470 41994593 -142294069 + L1MA8 LINE L1 6169 6291 0 2167 118 0 0 chr4 41995037 41995326 -142293336 - AluSx SINE Alu -23 289 1 657 326 25 0 chr4 41995542 41995781 -142292881 + MIR SINE MIR 3 247 -15 241 291 25 0 chr4 41995877 41995956 -142292706 - MIR SINE MIR -107 155 75 481 311 62 6 chr4 41996060 41996221 -142292441 - MER91A DNA MER1_type -26 170 1 360 371 80 17 chr4 41996221 41996645 -142292017 + L2 LINE L2 2634 3084 -188 199 191 0 85 chr4 41997365 41997412 -142291250 + MIR SINE MIR 210 252 -10 * 243 217 0 0 chr4 41997381 41997427 -142291235 + L2 LINE L2 3267 3312 -1 1620 168 20 14 chr4 41998653 41998945 -142289717 - AluJo SINE Alu -18 294 1 182 152 0 22 chr4 41999626 41999672 -142288990 + (TG)n Simple_repeat Simple_repeat 2 46 0 2065 94 0 8 chr4 41999691 41999957 -142288705 - AluSp SINE Alu -14 299 36 26 19 0 58 chr4 42000018 42000070 -142288592 + AT_rich Low_complexity Low_complexity 1 49 0 2936 9 0 0 chr4 42001644 42001962 -142286700 + AluYb8 SINE Alu 1 318 0 2442 87 0 3 chr4 42002139 42002450 -142286212 + AluSg SINE Alu 1 310 0 204 250 31 16 chr4 42002766 42002830 -142285832 - MIR SINE MIR -8 254 190 2895 129 2 32 chr4 42004938 42005411 -142283251 - L1PA15 LINE L1 0 6165 5707 1031 202 14 22 chr4 42006114 42006337 -142282325 + AluJb SINE Alu 85 305 -7 1864 102 11 8 chr4 42007302 42007566 -142281096 - AluSq SINE Alu -5 308 44 22 0 0 0 chr4 42007791 42007813 -142280849 + AT_rich Low_complexity Low_complexity 1 22 0 278 271 112 19 chr4 42008148 42008255 -142280407 + MIR SINE MIR 59 175 -87 277 272 105 9 chr4 42008305 42008419 -142280243 - L2 LINE L2 -4 3309 3185 348 304 78 17 chr4 42008581 42008696 -142279966 - L2 LINE L2 -2 3311 3190 30 27 0 0 chr4 42009088 42009125 -142279537 + AT_rich Low_complexity Low_complexity 1 37 0 31 0 0 0 chr4 42009181 42009212 -142279450 + AT_rich Low_complexity Low_complexity 1 31 0 2457 121 3 24 chr4 42009488 42009860 -142278802 + THE1B LTR MaLR 1 364 0 262 173 76 19 chr4 42009885 42009956 -142278706 - MER5B DNA MER1_type -109 80 1 251 323 91 0 chr4 42010316 42010415 -142278247 + L2 LINE L2 2943 3050 -222 1788 143 11 0 chr4 42010555 42010828 -142277834 - AluSx SINE Alu -6 306 31 714 167 73 27 chr4 42011110 42011260 -142277402 + MER3 DNA MER1_type 1 157 -52 331 291 77 13 chr4 42011263 42011550 -142277112 - L1MEc LINE L1 -937 1639 1512 621 285 74 44 chr4 42011831 42012134 -142276528 - L1MEc LINE L1 -5043 1162 837 2437 70 0 19 chr4 42012134 42012448 -142276214 - AluY SINE Alu -3 308 1 621 285 74 44 chr4 42012448 42012645 -142276017 - L1MEc LINE L1 -5368 837 647 995 197 87 9 chr4 42012737 42012955 -142275707 - MER46A DNA MER2_type -1 235 1 188 363 25 25 chr4 42013190 42013350 -142275312 + L2 LINE L2 2354 2513 -801 21 36 0 0 chr4 42013641 42013669 -142274993 + AT_rich Low_complexity Low_complexity 1 28 0 712 226 6 18 chr4 42014392 42014556 -142274106 + MER4D LTR ERV1 735 896 -7 252 0 0 0 chr4 42015062 42015090 -142273572 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 318 299 79 16 chr4 42015185 42015312 -142273350 - MER5A DNA MER1_type -54 135 1 185 300 0 0 chr4 42015630 42015680 -142272982 + L2 LINE L2 3215 3264 -8 448 281 57 64 chr4 42016494 42016608 -142272054 + MIR SINE MIR 37 148 -114 2170 115 3 3 chr4 42016608 42016904 -142271758 + AluSx SINE Alu 5 300 -12 448 281 57 64 chr4 42016904 42016996 -142271666 + MIR SINE MIR 148 239 -23 2239 94 7 3 chr4 42017531 42017817 -142270845 + AluSx SINE Alu 1 287 -25 518 204 242 13 chr4 42017915 42018072 -142270590 + MIR SINE MIR 20 212 -50 201 291 228 8 chr4 42018253 42018380 -142270282 - MER5A DNA MER1_type 0 189 35 * 222 269 209 15 chr4 42018269 42018403 -142270259 + MER5A DNA MER1_type 30 189 0 266 261 269 0 chr4 42018587 42018706 -142269956 - MIR SINE MIR -6 256 106 237 159 0 0 chr4 42019038 42019082 -142269580 + CT-rich Low_complexity Low_complexity 2 45 0 378 262 90 8 chr4 42019262 42019384 -142269278 - MIR SINE MIR -84 178 47 981 133 0 0 chr4 42019700 42019858 -142268804 + (GAA)n Simple_repeat Simple_repeat 2 159 0 260 269 82 45 chr4 42020313 42020447 -142268215 + MIR3 SINE MIR 32 170 -38 573 223 294 5 chr4 42020657 42020854 -142267808 - MIR SINE MIR 0 262 9 216 0 0 0 chr4 42020991 42021015 -142267647 + (A)n Simple_repeat Simple_repeat 1 24 0 1234 246 35 3 chr4 42021146 42021434 -142267228 + AluJo SINE Alu 2 298 -4 1773 168 84 0 chr4 42022663 42022984 -142265678 - MER46B DNA MER2_type -13 223 1 213 290 224 0 chr4 42023817 42023924 -142264738 + MIR SINE MIR 56 186 -76 303 252 54 9 chr4 42023938 42024049 -142264613 - MER21B LTR ERV1 -113 750 635 3404 108 47 97 chr4 42024090 42024522 -142264140 + LTR36 LTR ERV1 1 453 -158 2516 21 0 4 chr4 42024522 42024802 -142263860 - AluY SINE Alu -11 300 22 3404 108 47 97 chr4 42024802 42024903 -142263759 + LTR36 LTR ERV1 453 558 -53 1682 126 11 121 chr4 42024903 42025251 -142263411 + AluJo SINE Alu 1 310 -2 1847 118 0 33 chr4 42025255 42025525 -142263137 + AluSx SINE Alu 1 261 -51 3404 108 47 97 chr4 42025525 42025623 -142263039 + LTR36 LTR ERV1 561 606 -5 1860 236 97 32 chr4 42025623 42026182 -142262480 - MER21B LTR ERV1 -256 607 13 255 179 90 26 chr4 42026480 42026558 -142262104 + MLT1K LTR MaLR 330 412 -176 303 152 18 161 chr4 42026573 42026638 -142262024 + MER5C DNA MER1_type 58 102 -222 2350 62 3 53 chr4 42026638 42026961 -142261701 + AluY SINE Alu 1 307 -4 303 152 18 161 chr4 42026961 42027007 -142261655 + MER5C DNA MER1_type 102 153 -171 23 0 0 0 chr4 42027007 42027030 -142261632 + AT_rich Low_complexity Low_complexity 1 23 0 588 229 239 5 chr4 42027355 42027560 -142261102 - MIR SINE MIR 0 262 10 276 374 113 22 chr4 42027642 42027864 -142260798 + L2 LINE L2 2985 3226 -46 738 256 62 20 chr4 42027923 42028118 -142260544 - MIR SINE MIR -26 236 34 255 343 10 10 chr4 42028248 42028350 -142260312 + L2 LINE L2 3163 3264 -8 804 230 43 0 chr4 42028408 42028595 -142260067 - MIR SINE MIR -37 225 31 953 246 72 11 chr4 42028600 42028864 -142259798 - MLT1C LTR MaLR 0 467 188 254 175 70 18 chr4 42028869 42028926 -142259736 - MLT1C LTR MaLR -243 224 165 779 180 49 33 chr4 42028963 42029146 -142259516 - MLT1C LTR MaLR -281 186 1 23 0 0 0 chr4 42030337 42030360 -142258302 + AT_rich Low_complexity Low_complexity 1 23 0 407 282 88 17 chr4 42030918 42031099 -142257563 + MIR SINE MIR 68 261 -1 390 195 189 77 chr4 42031729 42031860 -142256802 + MIR SINE MIR 46 202 -60 1724 132 4 0 chr4 42031860 42032095 -142256567 - MER46A DNA MER2_type 0 236 1 390 195 189 77 chr4 42032095 42032132 -142256530 + MIR SINE MIR 202 233 -29 486 275 53 0 chr4 42032566 42032697 -142255965 + L2 LINE L2 3134 3271 -1 317 305 136 8 chr4 42032822 42032940 -142255722 - MIR3 SINE MIR -72 136 4 1547 162 3 65 chr4 42034419 42034537 -142254125 + AluJo SINE Alu 1 125 -187 183 42 0 0 chr4 42034537 42034561 -142254101 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1547 162 3 65 chr4 42034561 42034763 -142253899 + AluJo SINE Alu 125 301 -11 2368 81 16 3 chr4 42035760 42036069 -142252593 + AluSp SINE Alu 1 313 0 193 209 23 0 chr4 42036266 42036309 -142252353 + L2 LINE L2 1784 1827 -1487 509 106 0 0 chr4 42036428 42036494 -142252168 - AluSq SINE Alu -114 199 134 449 203 70 42 chr4 42036512 42036655 -142252007 + MER5C DNA MER1_type 172 318 -6 377 307 7 21 chr4 42036838 42036893 -142251769 + GA-rich Low_complexity Low_complexity 4 58 -83 2395 96 0 0 chr4 42036893 42037194 -142251468 + AluSc SINE Alu 1 301 -8 377 307 7 21 chr4 42037194 42037278 -142251384 + GA-rich Low_complexity Low_complexity 58 141 0 25 0 0 0 chr4 42038221 42038246 -142250416 + AT_rich Low_complexity Low_complexity 1 25 0 1830 202 82 32 chr4 42038431 42038872 -142249790 + L1MC4a LINE L1 7346 7808 0 185 267 100 17 chr4 42039604 42039664 -142248998 + L2 LINE L2 2686 2750 -564 1013 97 0 8 chr4 42039664 42039798 -142248864 + AluSq/x SINE Alu 1 133 -179 1963 138 0 13 chr4 42039802 42040107 -142248555 + AluSx SINE Alu 1 301 -11 440 292 119 25 chr4 42040370 42040613 -142248049 + L2 LINE L2 3009 3274 -39 2261 132 12 0 chr4 42041539 42041872 -142246790 + MER7A DNA MER2_type 12 346 0 523 156 57 41 chr4 42042492 42042614 -142246048 + MER5C DNA MER1_type 1 124 -200 202 243 338 0 chr4 42043377 42043525 -142245137 + MER5C DNA MER1_type 127 324 0 1637 146 26 0 chr4 42045967 42046234 -142242428 - L1MB3 LINE L1 -42 6141 5868 220 329 30 108 chr4 42048397 42048628 -142240034 + L2 LINE L2 3030 3242 -30 413 235 27 107 chr4 42049633 42049820 -142238842 - MIR SINE MIR -37 225 54 635 211 79 26 chr4 42049847 42049999 -142238663 - MER20 DNA MER1_type -59 160 1 285 268 14 0 chr4 42050267 42050338 -142238324 + L2 LINE L2 3241 3312 -1 2100 131 0 3 chr4 42050813 42051110 -142237552 + AluSx SINE Alu 14 309 -3 2271 100 0 0 chr4 42052153 42052444 -142236218 - AluSx SINE Alu -19 293 3 1788 149 43 0 chr4 42053798 42054100 -142234562 - MER1B DNA MER1_type -24 315 1 358 267 37 52 chr4 42054192 42054327 -142234335 - MIR SINE MIR -56 152 20 2158 112 0 0 chr4 42054857 42055164 -142233498 + AluSx SINE Alu 1 307 0 284 47 0 23 chr4 42055341 42055384 -142233278 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1147 87 40 0 chr4 42055497 42055647 -142233015 - L1PA11 LINE L1 -10 6164 6009 846 134 0 0 chr4 42055987 42056106 -142232556 - FRAM SINE Alu -17 159 41 925 204 11 16 chr4 42058945 42059131 -142229531 - MER5A DNA MER1_type 0 189 5 313 339 70 0 chr4 42059269 42059384 -142229278 - L2 LINE L2 -44 3228 3106 229 305 46 53 chr4 42060713 42060844 -142227818 - MIR3 SINE MIR -48 160 31 848 204 48 0 chr4 42061089 42061256 -142227406 + FAM SINE Alu 1 175 0 930 283 28 0 chr4 42061666 42061913 -142226749 - MIR SINE MIR -3 259 6 930 236 15 5 chr4 42062205 42062404 -142226258 - MER3 DNA MER1_type -8 201 1 616 237 126 0 chr4 42062592 42062782 -142225880 + MIR SINE MIR 20 233 -29 467 293 96 53 chr4 42062793 42063168 -142225494 + L2 LINE L2 2384 2774 -540 309 325 37 75 chr4 42063324 42063592 -142225070 + L2 LINE L2 2827 3084 -188 569 332 20 5 chr4 42063633 42063835 -142224827 + MIR SINE MIR 42 246 -16 35 78 0 0 chr4 42063899 42063976 -142224686 + AT_rich Low_complexity Low_complexity 1 77 0 313 259 36 45 chr4 42064077 42064189 -142224473 - LTR67 LTR ERVL -15 542 432 180 290 48 16 chr4 42064420 42064461 -142224201 + L2 LINE L2 2926 2971 -301 1473 164 70 0 chr4 42064461 42064717 -142223945 - AluJo SINE Alu -38 274 1 180 290 48 16 chr4 42064717 42064737 -142223925 + L2 LINE L2 2971 2989 -283 195 219 0 0 chr4 42064834 42064875 -142223787 + L2 LINE L2 3272 3312 -1 485 234 53 128 chr4 42064903 42064939 -142223723 - MIR SINE MIR -38 224 187 1989 137 0 3 chr4 42064939 42065246 -142223416 + AluSx SINE Alu 3 308 0 485 234 53 128 chr4 42065246 42065435 -142223227 - MIR SINE MIR -75 187 15 180 0 0 0 chr4 42066540 42066560 -142222102 + (A)n Simple_repeat Simple_repeat 1 20 0 214 140 40 0 chr4 42067350 42067400 -142221262 + (TA)n Simple_repeat Simple_repeat 2 53 0 26 30 0 0 chr4 42067461 42067494 -142221168 + AT_rich Low_complexity Low_complexity 1 33 0 388 306 37 25 chr4 42067725 42067967 -142220695 - L1M4 LINE L1 -1312 4834 4590 1922 189 96 32 chr4 42068172 42068611 -142220051 + MLT1C LTR MaLR 1 467 0 2169 113 0 0 chr4 42068663 42068954 -142219708 - AluSq SINE Alu -22 291 1 1252 104 14 77 chr4 42069310 42069486 -142219176 + L1MB3 LINE L1 5976 6137 -46 2383 72 0 13 chr4 42069486 42069791 -142218871 + AluY SINE Alu 1 301 -10 1252 104 14 77 chr4 42069791 42069835 -142218827 + L1MB3 LINE L1 6137 6182 -1 736 102 0 0 chr4 42070092 42070190 -142218472 - AluSg/x SINE Alu -5 307 210 684 164 26 0 chr4 42070291 42070407 -142218255 + L2 LINE L2 1833 1951 -1363 192 348 14 0 chr4 42070463 42070532 -142218130 + L2 LINE L2 2181 2250 -1064 269 132 0 0 chr4 42070532 42070570 -142218092 + tRNA-Gly-GGA tRNA tRNA 1 38 -37 1458 237 104 43 chr4 42070571 42070660 -142218002 + L2 LINE L2 2240 2322 -992 2451 122 16 21 chr4 42070660 42071037 -142217625 - THE1C LTR MaLR 0 375 1 1458 237 104 43 chr4 42071037 42071437 -142217225 + L2 LINE L2 2322 2759 -555 2723 135 48 33 chr4 42071437 42071840 -142216822 + MLT1C LTR MaLR 1 413 -54 3722 123 9 26 chr4 42071840 42072376 -142216286 - MER1A DNA MER1_type 0 527 1 2723 135 48 33 chr4 42072376 42072432 -142216230 + MLT1C LTR MaLR 413 467 0 378 212 284 14 chr4 42072476 42072698 -142215964 + L2 LINE L2 2862 3143 -170 550 263 121 31 chr4 42072717 42073089 -142215573 + LTR16A LTR ERVL 1 450 0 352 202 124 22 chr4 42073090 42073179 -142215483 + L2 LINE L2 3176 3273 -40 345 177 0 0 chr4 42074762 42074824 -142213838 - Tigger5 DNA MER2_type -26 2297 2236 197 107 0 0 chr4 42074871 42074899 -142213763 - MIR SINE MIR -82 180 153 271 336 26 17 chr4 42075625 42075741 -142212921 + MIR SINE MIR 84 200 -62 186 133 0 0 chr4 42075951 42075981 -142212681 + (TATG)n Simple_repeat Simple_repeat 3 32 0 1806 159 84 18 chr4 42076431 42076765 -142211897 + MLT1A1 LTR MaLR 10 365 0 913 157 18 18 chr4 42076843 42077009 -142211653 + AluJb SINE Alu 132 297 -15 1655 250 120 5 chr4 42077019 42077571 -142211091 + L1ME3 LINE L1 5529 6143 -19 2179 104 7 7 chr4 42078322 42078630 -142210032 - AluSg SINE Alu -2 308 1 4524 183 36 30 chr4 42079552 42080982 -142207680 + L1MA9 LINE L1 4843 6278 -34 574 260 69 12 chr4 42081370 42081543 -142207119 - MIR SINE MIR -22 240 58 222 37 0 0 chr4 42081825 42081852 -142206810 + (GA)n Simple_repeat Simple_repeat 2 28 0 1668 145 6 93 chr4 42082092 42082416 -142206246 + AluJo SINE Alu 1 296 -16 1491 158 75 4 chr4 42082481 42082769 -142205893 + AluJo SINE Alu 1 307 0 21 36 0 0 chr4 42082926 42082954 -142205708 + AT_rich Low_complexity Low_complexity 1 28 0 1705 274 143 35 chr4 42083014 42083959 -142204703 + L2 LINE L2 1952 3109 -204 2435 61 3 0 chr4 42083959 42084252 -142204410 + AluY SINE Alu 1 294 -17 1705 274 143 35 chr4 42084252 42084482 -142204180 + L2 LINE L2 3109 3313 0 207 0 0 0 chr4 42084680 42084703 -142203959 + (T)n Simple_repeat Simple_repeat 1 23 0 2266 99 10 0 chr4 42085687 42085989 -142202673 + AluSx SINE Alu 1 305 -7 186 43 0 0 chr4 42085990 42086013 -142202649 + (CA)n Simple_repeat Simple_repeat 2 24 0 516 272 89 0 chr4 42086323 42086481 -142202181 - MIR SINE MIR -2 260 89 327 177 0 0 chr4 42086766 42086828 -142201834 + (TCTG)n Simple_repeat Simple_repeat 3 64 0 2041 130 3 7 chr4 42087500 42087799 -142200863 - AluJo SINE Alu -12 300 3 26 50 0 0 chr4 42088158 42088198 -142200464 + AT_rich Low_complexity Low_complexity 1 40 0 2557 61 0 10 chr4 42088198 42088510 -142200152 - AluY SINE Alu -2 309 1 310 301 57 20 chr4 42089099 42089300 -142199362 + MIR SINE MIR 48 205 -3 833 135 8 8 chr4 42089319 42089445 -142199217 + FLAM_C SINE Alu 1 126 -7 840 215 47 70 chr4 42089450 42089748 -142198914 + L1ME1 LINE L1 5874 6164 -2 255 229 29 0 chr4 42089754 42089824 -142198838 + MIR SINE MIR 179 250 -12 2020 140 0 10 chr4 42090124 42090444 -142198218 - AluJb SINE Alu 0 312 1 1738 213 147 15 chr4 42090489 42091033 -142197629 - L2 LINE L2 -767 2547 1932 2372 147 21 2 chr4 42091073 42091495 -142197167 + L1M4 LINE L1 5322 5751 -427 1196 202 19 4 chr4 42091486 42091748 -142196914 + L1M4 LINE L1 1041 1306 -5236 * 1876 195 47 31 chr4 42091791 42092109 -142196553 - MER101 LTR ERV1 -32 442 114 3319 201 19 43 chr4 42092109 42092176 -142196486 - MER72 LTR ERV1 0 722 655 2405 85 0 16 chr4 42092176 42092493 -142196169 + AluSx SINE Alu 1 312 0 3319 201 19 43 chr4 42092493 42093165 -142195497 - MER72 LTR ERV1 -67 655 1 1876 195 47 31 chr4 42093165 42093271 -142195391 - MER101 LTR ERV1 -360 114 11 247 75 0 25 chr4 42093271 42093311 -142195351 + L1M4 LINE L1 1305 1343 -5303 * 252 187 27 53 chr4 42093307 42093382 -142195280 - L1M4 LINE L1 -5512 1030 958 1754 195 3 3 chr4 42093411 42093719 -142194943 - L1M4 LINE L1 -5690 852 545 327 209 15 0 chr4 42093801 42093868 -142194794 - L1M4 LINE L1 -6474 68 1 1199 289 87 29 chr4 42093869 42094381 -142194281 - L1MDa LINE L1 -2523 4017 3536 1617 204 0 10 chr4 42094381 42094689 -142193973 - AluJo SINE Alu -7 305 1 1199 289 87 29 chr4 42094689 42095098 -142193564 - L1MDa LINE L1 -3004 3536 3011 22 0 0 0 chr4 42095099 42095121 -142193541 + AT_rich Low_complexity Low_complexity 1 22 0 6414 17 6 0 chr4 42095121 42095813 -142192849 - L1PA2 LINE L1 0 6155 5460 2424 223 59 19 chr4 42095832 42096411 -142192251 - MER76 LTR ERV -10 678 77 491 300 53 11 chr4 42096411 42096674 -142191988 - L1MDa LINE L1 -3653 2887 2614 993 190 35 10 chr4 42096676 42096876 -142191786 + AluJo SINE Alu 84 288 -24 2468 72 0 0 chr4 42097302 42097614 -142191048 - AluY SINE Alu 0 312 1 25 31 0 0 chr4 42097622 42097654 -142191008 + AT_rich Low_complexity Low_complexity 1 32 0 1087 179 6 0 chr4 42097686 42097854 -142190808 - FAM SINE Alu -3 172 4 433 299 85 22 chr4 42097907 42098131 -142190531 - L1MDa LINE L1 -4534 2006 1769 25 31 0 0 chr4 42098182 42098214 -142190448 + AT_rich Low_complexity Low_complexity 1 32 0 1952 167 0 0 chr4 42098445 42098739 -142189923 + AluSx SINE Alu 1 294 -18 2280 82 0 17 chr4 42098875 42099166 -142189496 - AluSc SINE Alu -23 286 1 994 112 14 7 chr4 42099166 42099309 -142189353 - AluSq/x SINE Alu -168 145 2 816 176 0 8 chr4 42099309 42099440 -142189222 - FLAM_A SINE Alu -3 130 1 270 189 19 0 chr4 42099928 42099981 -142188681 + L2 LINE L2 3254 3307 -6 476 299 40 19 chr4 42100481 42100668 -142187994 + MIR SINE MIR 3 192 -62 2229 105 0 23 chr4 42100761 42101067 -142187595 + AluY SINE Alu 1 299 -12 2233 111 3 0 chr4 42101281 42101578 -142187084 - AluSx SINE Alu -14 298 1 329 225 105 20 chr4 42101767 42101919 -142186743 - LTR67 LTR ERVL -2 523 384 2118 123 3 25 chr4 42102597 42102915 -142185747 - AluSx SINE Alu -1 311 1 1730 176 0 10 chr4 42103015 42103305 -142185357 - AluJo SINE Alu -25 287 1 486 280 182 19 chr4 42103862 42104076 -142184586 + MIR SINE MIR 5 253 -9 262 252 56 37 chr4 42104090 42104197 -142184465 + L1M4 LINE L1 17 125 -6417 317 303 46 13 chr4 42104578 42104730 -142183932 + L1M4 LINE L1 719 875 -5667 888 165 62 88 chr4 42104855 42105115 -142183547 + L1ME1 LINE L1 4220 4472 -1674 1258 180 36 60 chr4 42105218 42105290 -142183372 - MER69 DNA AcHobo -359 2167 2095 2252 159 37 0 chr4 42105290 42105642 -142183020 - MLT1A1 LTR MaLR 0 365 1 1258 180 36 60 chr4 42105642 42105903 -142182759 - MER69 DNA AcHobo -431 2095 1842 * 1768 254 80 19 chr4 42105901 42106003 -142182659 - MER69 DNA AcHobo -1772 754 660 2899 121 41 2 chr4 42106003 42106415 -142182247 - MSTA LTR MaLR 0 428 1 1768 254 80 19 chr4 42106415 42106840 -142181822 - MER69 DNA AcHobo -1866 660 195 1039 183 15 60 chr4 42106943 42107138 -142181524 - MER69 DNA AcHobo -122 2404 2223 2100 109 30 13 chr4 42107138 42107441 -142181221 - AluSg SINE Alu -2 308 1 1039 183 15 60 chr4 42107441 42107513 -142181149 - MER69 DNA AcHobo -303 2223 2149 309 51 0 0 chr4 42107643 42107682 -142180980 + (T)n Simple_repeat Simple_repeat 1 39 0 779 197 5 116 chr4 42107774 42107862 -142180800 - MER97b DNA MER1_type? -486 567 511 1722 159 16 29 chr4 42107862 42108171 -142180491 + AluJo SINE Alu 1 305 -7 779 197 5 116 chr4 42108171 42108280 -142180382 - MER97b DNA MER1_type? -542 511 392 338 114 0 0 chr4 42108380 42108424 -142180238 - Alu SINE Alu -257 44 1 2254 215 46 10 chr4 42108721 42109243 -142179419 + L1ME1 LINE L1 5621 6161 -5 890 198 59 102 chr4 42109246 42109569 -142179093 + MER52A LTR ERV1 662 970 -785 * 1176 229 205 64 chr4 42109563 42110139 -142178523 + MER52A LTR ERV1 1099 1755 0 2179 195 53 8 chr4 42110720 42111232 -142177430 + L1ME1 LINE L1 4651 5185 -961 231 220 17 0 chr4 42111283 42111342 -142177320 - AluJ/FLAM SINE Alu -201 101 42 293 170 0 0 chr4 42111344 42111397 -142177265 + FLAM_A SINE Alu 81 133 0 4093 208 26 15 chr4 42111426 42112375 -142176287 + L1ME1 LINE L1 5204 6160 -6 2203 96 24 0 chr4 42112670 42112961 -142175701 + AluSx SINE Alu 1 298 -14 201 281 256 37 chr4 42113030 42113112 -142175550 - MIR SINE MIR -69 139 40 1601 110 144 19 chr4 42113240 42113504 -142175158 + AluSx SINE Alu 1 297 -15 434 280 91 14 chr4 42113743 42113886 -142174776 + MLT1L LTR MaLR 327 480 -135 332 68 0 0 chr4 42113889 42113933 -142174729 + MER65A LTR ERV1 1 44 -401 2450 84 7 0 chr4 42113937 42114247 -142174415 + AluSp SINE Alu 1 312 -1 803 215 6 0 chr4 42114249 42114412 -142174250 + AluJo/FRAM SINE Alu 129 292 -20 2315 93 6 3 chr4 42114415 42114726 -142173936 + AluSq SINE Alu 1 312 -1 2696 133 7 5 chr4 42114735 42115140 -142173522 + MER65A LTR ERV1 40 445 0 233 273 34 0 chr4 42115146 42115234 -142173428 + MLT1L LTR MaLR 492 582 -33 2601 119 3 0 chr4 42115257 42115593 -142173069 - MER1B DNA MER1_type 0 337 1 757 228 133 9 chr4 42115595 42115828 -142172834 + MIR SINE MIR 1 262 0 191 288 139 78 chr4 42115878 42116173 -142172489 - L3 LINE CR1 -174 1403 1091 207 256 0 0 chr4 42116183 42116226 -142172436 - L2 LINE L2 -5 3308 3266 416 250 20 20 chr4 42116302 42116402 -142172260 - MER117 DNA MER1_type -1 196 97 1183 109 18 0 chr4 42116551 42116716 -142171946 + AluSc SINE Alu 141 308 -1 852 100 0 0 chr4 42116723 42116833 -142171829 - AluSq/x SINE Alu -202 110 1 21 0 0 0 chr4 42116996 42117017 -142171645 + AT_rich Low_complexity Low_complexity 1 21 0 758 149 4 14 chr4 42117078 42117336 -142171326 + AluJo SINE Alu 1 306 -6 462 300 93 36 chr4 42117366 42117912 -142170750 - L1ME4a LINE L1 -83 6038 5400 1733 175 3 7 chr4 42117914 42118217 -142170445 - AluJo SINE Alu -9 303 2 2115 120 3 0 chr4 42118589 42118880 -142169782 - AluSx SINE Alu -20 292 1 180 0 0 0 chr4 42119116 42119136 -142169526 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 273 327 35 18 chr4 42119666 42119779 -142168883 + MIR SINE MIR 68 182 -80 2120 128 42 31 chr4 42119802 42120162 -142168500 - THE1B LTR MaLR 0 364 1 685 227 58 112 chr4 42120512 42120790 -142167872 - Charlie8 DNA MER1_type -2128 289 27 2211 208 68 30 chr4 42121818 42121839 -142166823 + L1MB7 LINE L1 5585 5604 -580 2203 97 14 3 chr4 42121839 42122127 -142166535 + AluSx SINE Alu 1 291 -21 2211 208 68 30 chr4 42122127 42122660 -142166002 + L1MB7 LINE L1 5604 6164 -20 2443 88 0 0 chr4 42122660 42122955 -142165707 - AluSq SINE Alu -18 295 1 2211 208 68 30 chr4 42122955 42122975 -142165687 + L1MB7 LINE L1 6164 6182 -2 21 0 0 0 chr4 42123719 42123740 -142164922 + AT_rich Low_complexity Low_complexity 1 21 0 342 45 0 0 chr4 42124249 42124293 -142164369 + (GA)n Simple_repeat Simple_repeat 2 45 0 486 159 34 0 chr4 42124526 42124614 -142164048 + MER53 DNA DNA 1 91 -98 256 293 60 10 chr4 42124682 42124793 -142163869 + MIR SINE MIR 45 160 -61 605 254 97 6 chr4 42124872 42125037 -142163625 - MLT1J LTR MaLR -331 180 1 1226 130 6 0 chr4 42125338 42125515 -142163147 - AluY SINE Alu -1 310 133 239 314 23 0 chr4 42125759 42125845 -142162817 - L3 LINE CR1 -1169 408 321 186 133 0 0 chr4 42125943 42125973 -142162689 + (TTC)n Simple_repeat Simple_repeat 2 31 0 359 333 114 38 chr4 42126181 42126324 -142162338 + L2 LINE L2 2989 3120 -152 2579 42 3 6 chr4 42126324 42126636 -142162026 + AluY SINE Alu 1 311 0 359 333 114 38 chr4 42126636 42126756 -142161906 + L2 LINE L2 3120 3272 0 278 189 0 0 chr4 42126851 42126904 -142161758 - L1MB8 LINE L1 0 6178 6126 336 301 92 12 chr4 42127011 42127184 -142161478 + MIR SINE MIR 21 207 -55 25 0 0 0 chr4 42131115 42131140 -142157522 + AT_rich Low_complexity Low_complexity 1 25 0 531 176 0 0 chr4 42131147 42131232 -142157430 - FLAM_A SINE Alu -57 85 1 1537 166 96 0 chr4 42133583 42133854 -142154808 + AluJb SINE Alu 1 297 -15 1500 150 92 8 chr4 42134071 42134311 -142154351 - AluSx SINE Alu -52 260 1 26 30 0 0 chr4 42134443 42134476 -142154186 + AT_rich Low_complexity Low_complexity 1 33 0 1782 162 15 0 chr4 42134476 42134748 -142153914 - AluJo SINE Alu -23 289 14 203 297 69 20 chr4 42134811 42134912 -142153750 + MIR SINE MIR 8 113 -149 1306 172 56 8 chr4 42134980 42135230 -142153432 - MER61A LTR ERV1 -81 262 1 186 350 112 0 chr4 42135413 42135556 -142153106 + L2 LINE L2 2471 2629 -685 21 0 0 0 chr4 42135562 42135583 -142153079 + AT_rich Low_complexity Low_complexity 1 21 0 4495 137 12 59 chr4 42135583 42135939 -142152723 - L1MB3 LINE L1 -1 6182 5811 2224 107 3 0 chr4 42135939 42136274 -142152388 - AluSg SINE Alu 0 310 1 4495 137 12 59 chr4 42136274 42136759 -142151903 - L1MB3 LINE L1 -372 5811 5381 398 202 96 0 chr4 42136764 42136868 -142151794 + L1 LINE L1 5185 5298 -848 2469 86 0 13 chr4 42136904 42137219 -142151443 - AluY SINE Alu 0 311 1 734 181 7 0 chr4 42137283 42137432 -142151230 + GA-rich Low_complexity Low_complexity 3 152 0 534 235 22 7 chr4 42137560 42137696 -142150966 - MER5B DNA MER1_type -1 177 40 358 167 127 28 chr4 42137699 42137822 -142150840 + L1MB5 LINE L1 6039 6180 0 241 323 0 24 chr4 42137891 42138015 -142150647 - MER5A DNA MER1_type -25 164 44 2137 104 35 0 chr4 42138015 42138302 -142150360 - AluSg SINE Alu -13 297 1 1173 140 0 0 chr4 42138436 42138600 -142150062 - AluSg/x SINE Alu -12 300 137 2054 91 24 170 chr4 42139013 42139431 -142149231 + LTR18A LTR ERVL 1 357 0 7874 108 35 16 chr4 42140215 42140617 -142148045 + Tigger3b DNA MER2_type 1 394 -2634 2638 52 0 3 chr4 42140617 42140924 -142147738 + AluY SINE Alu 1 306 -5 7874 108 35 16 chr4 42140924 42141729 -142146933 + Tigger3b DNA MER2_type 394 1231 0 229 375 62 7 chr4 42141755 42141899 -142146763 + L2 LINE L2 3121 3272 0 216 0 0 0 chr4 42142534 42142558 -142146104 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5541 158 38 35 chr4 42143437 42144470 -142144192 - L1PA16 LINE L1 -8 6158 5118 1770 161 21 3 chr4 42144470 42144756 -142143906 - AluSx SINE Alu -21 291 1 5541 158 38 35 chr4 42144756 42145659 -142143003 - L1PA16 LINE L1 -1048 5118 4219 673 129 69 9 chr4 42145659 42145775 -142142887 + AluJb SINE Alu 171 293 -19 2883 172 19 2 chr4 42145775 42146293 -142142369 - L1 LINE L1 -1924 4222 3696 731 91 0 0 chr4 42146293 42146392 -142142270 - AluY SINE Alu -9 302 204 270 0 0 0 chr4 42146911 42146941 -142141721 + (TTA)n Simple_repeat Simple_repeat 1 30 0 787 41 10 0 chr4 42146942 42147039 -142141623 - HY3 scRNA scRNA -3 98 1 500 188 278 0 chr4 42147187 42147331 -142141331 + MER5A DNA MER1_type 1 184 -5 453 283 133 47 chr4 42148666 42149099 -142139563 - MLT1H LTR MaLR 0 549 22 1341 209 89 17 chr4 42149282 42149641 -142139021 + LTR16A1 LTR ERVL 1 385 -72 1835 155 13 35 chr4 42149759 42150076 -142138586 - AluSx SINE Alu -2 310 1 2364 148 45 26 chr4 42150440 42150740 -142137922 - MSTB LTR MaLR 0 426 114 2006 145 59 17 chr4 42150740 42151098 -142137564 - THE1C LTR MaLR -2 373 1 2364 148 45 26 chr4 42151098 42151215 -142137447 - MSTB LTR MaLR -312 114 1 945 264 74 82 chr4 42151248 42151760 -142136902 + MLT1K LTR MaLR 67 574 -14 23 0 0 0 chr4 42152162 42152185 -142136477 + AT_rich Low_complexity Low_complexity 1 23 0 306 283 35 96 chr4 42152338 42152465 -142136197 - MIR SINE MIR -57 205 93 1810 125 0 0 chr4 42152465 42152713 -142135949 + AluSx SINE Alu 40 287 -25 306 283 35 96 chr4 42152713 42152783 -142135879 - MIR SINE MIR -169 93 20 616 267 44 19 chr4 42152916 42153122 -142135540 - L2 LINE L2 0 3313 3103 846 83 0 0 chr4 42153126 42153233 -142135429 + MSTB LTR MaLR 1 107 -319 3024 146 7 11 chr4 42153233 42153692 -142134970 - LTR32 LTR ERVL 0 471 15 1564 164 53 50 chr4 42153692 42154015 -142134647 + MSTB LTR MaLR 103 426 0 458 252 7 59 chr4 42154015 42154150 -142134512 - L2 LINE L2 -226 3087 2960 468 121 0 0 chr4 42154170 42154236 -142134426 - THE1B LTR MaLR 0 364 299 610 41 0 0 chr4 42154336 42154409 -142134253 - THE1C LTR MaLR -302 73 1 1260 134 22 60 chr4 42154612 42154704 -142133958 + L1MD3 LINE L1 7727 7821 -174 2385 157 74 0 chr4 42154704 42155125 -142133537 + LTR47A LTR ERVL 1 452 0 1260 134 22 60 chr4 42155125 42155301 -142133361 + L1MD3 LINE L1 7821 7985 -10 1614 143 0 40 chr4 42155310 42155561 -142133101 + AluJo SINE Alu 1 241 -71 662 233 82 48 chr4 42155572 42155977 -142132685 + LTR1B LTR ERV1 39 1216 -333 314 121 30 45 chr4 42156180 42156246 -142132416 + AluJo SINE Alu 238 302 0 9969 104 3 0 chr4 42156311 42157712 -142130950 + L1P LINE L1 3952 5356 -790 363 194 129 0 chr4 42157812 42157905 -142130757 - L1ME3 LINE L1 -33 6129 6025 400 281 54 9 chr4 42157950 42158171 -142130491 + HAL1 LINE L1 1002 1232 -1275 1091 96 75 64 chr4 42158179 42158366 -142130296 - AluJo SINE Alu -38 274 86 1962 139 0 0 chr4 42158393 42158667 -142129995 - AluSx SINE Alu -38 274 1 586 267 104 10 chr4 42158686 42158888 -142129774 - L1MEd LINE L1 -5359 760 540 1531 167 4 19 chr4 42159042 42159306 -142129356 + AluJb SINE Alu 38 297 -15 743 170 0 13 chr4 42159385 42159702 -142128960 + (TG)n Simple_repeat Simple_repeat 1 312 0 549 277 67 32 chr4 42159707 42159992 -142128670 - L1MEd LINE L1 -5799 320 26 192 302 0 19 chr4 42160157 42160210 -142128452 - L2 LINE L2 -254 3059 3008 23 54 0 0 chr4 42160348 42160385 -142128277 + AT_rich Low_complexity Low_complexity 1 37 0 1008 273 96 13 chr4 42160530 42160926 -142127736 + LTR16B LTR ERVL 1 429 -35 2269 121 3 0 chr4 42160936 42161243 -142127419 - AluSx SINE Alu 0 312 5 1775 167 0 46 chr4 42161257 42161581 -142127081 - AluJo SINE Alu -3 309 1 231 219 0 0 chr4 42161587 42161628 -142127034 + LTR16B LTR ERVL 424 464 0 2729 172 20 7 chr4 42161658 42162436 -142126226 + L1MB8 LINE L1 4980 5766 -412 40407 73 6 7 chr4 42162447 42168617 -142120045 + L1PA6 LINE L1 11 6172 0 1389 115 50 0 chr4 42168727 42168945 -142119717 + L1MB8 LINE L1 5756 5984 -200 820 123 0 8 chr4 42168958 42169088 -142119574 + L1MB8 LINE L1 6045 6173 -5 216 0 0 0 chr4 42169093 42169117 -142119545 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2021 129 30 10 chr4 42169219 42169345 -142119317 + AluSx SINE Alu 1 123 -189 315 0 0 0 chr4 42169345 42169380 -142119282 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2021 129 30 10 chr4 42169380 42169555 -142119107 + AluSx SINE Alu 123 308 -4 243 230 160 0 chr4 42169587 42169687 -142118975 + L1ME4a LINE L1 6004 6119 -2 3188 100 29 23 chr4 42169729 42170075 -142118587 + L1MA3 LINE L1 5791 6142 -163 2259 112 0 0 chr4 42170075 42170378 -142118284 + AluSg SINE Alu 1 303 -7 3188 100 29 23 chr4 42170378 42170543 -142118119 + L1MA3 LINE L1 6142 6305 0 657 228 40 7 chr4 42172740 42172889 -142115773 - MER58B DNA MER1_type 0 341 188 426 238 139 45 chr4 42172942 42173098 -142115564 - MIR SINE MIR -38 224 43 2005 147 3 3 chr4 42173098 42173398 -142115264 + AluSx SINE Alu 1 300 -12 426 238 139 45 chr4 42173398 42173443 -142115219 - MIR SINE MIR -219 43 4 777 124 51 66 chr4 42173886 42174023 -142114639 - AluJo SINE Alu -177 135 1 189 0 0 0 chr4 42174028 42174049 -142114613 + (T)n Simple_repeat Simple_repeat 1 21 0 1543 173 66 0 chr4 42174433 42174704 -142113958 - AluJo SINE Alu -23 289 1 195 69 0 0 chr4 42175031 42175060 -142113602 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2240 74 0 11 chr4 42175062 42175347 -142113315 - AluY SINE Alu -29 282 1 231 186 0 144 chr4 42176449 42176546 -142112116 - L1MC3 LINE L1 -21 7764 7682 1185 100 6 0 chr4 42176546 42176706 -142111956 - MLT2A2 LTR ERVL 0 453 293 1957 113 37 10 chr4 42176754 42177054 -142111608 - MLT2A2 LTR ERVL -145 308 1 3181 176 112 22 chr4 42177063 42177795 -142110867 - L1MC3 LINE L1 -153 7632 6835 45263 36 2 1 chr4 42178223 42184356 -142104306 - L1PA4 LINE L1 0 6155 15 1762 161 7 3 chr4 42184362 42184653 -142104009 - AluJb SINE Alu -20 292 1 2147 113 3 44 chr4 42184663 42184982 -142103680 - AluSx SINE Alu -6 306 1 2305 117 20 8 chr4 42185486 42185837 -142102825 - THE1A LTR MaLR 0 355 1 2261 110 0 0 chr4 42186311 42186610 -142102052 - AluSq SINE Alu -14 299 1 495 257 176 11 chr4 42186788 42186975 -142101687 - MIR SINE MIR -19 243 26 292 256 239 0 chr4 42186999 42187116 -142101546 + MER69 DNA AcHobo 1 145 -2381 23 33 0 0 chr4 42187212 42187242 -142101420 + AT_rich Low_complexity Low_complexity 1 30 0 2754 92 0 11 chr4 42187390 42187758 -142100904 - THE1B LTR MaLR 0 364 1 578 194 21 56 chr4 42187777 42187921 -142100741 - FRAM SINE Alu -5 171 33 467 288 87 0 chr4 42187933 42188117 -142100545 + MIR SINE MIR 42 241 -21 2290 61 55 0 chr4 42188306 42188599 -142100063 - AluY SINE Alu -1 310 2 2110 146 0 3 chr4 42189596 42189905 -142098757 - AluSx SINE Alu -4 308 1 1949 148 3 3 chr4 42190754 42191045 -142097617 + AluJo SINE Alu 1 291 -21 631 204 9 0 chr4 42191123 42191236 -142097426 + Charlie1 DNA MER1_type 7 120 -2641 * 887 162 114 57 chr4 42191235 42191392 -142097270 + Charlie1 DNA MER1_type 2423 2570 -191 1814 168 3 10 chr4 42191392 42191689 -142096973 - AluJb SINE Alu -17 295 1 887 162 114 57 chr4 42191689 42191846 -142096816 + Charlie1 DNA MER1_type 2570 2755 -6 2402 107 3 0 chr4 42191901 42192209 -142096453 - AluSq SINE Alu -4 309 1 22 70 0 0 chr4 42192366 42192409 -142096253 + AT_rich Low_complexity Low_complexity 1 43 0 312 247 10 21 chr4 42192441 42192537 -142096125 - MLT1A1 LTR MaLR -103 287 180 1298 240 123 20 chr4 42193094 42193757 -142094905 - MER20B DNA MER1_type -3 780 2 1370 207 22 20 chr4 42193789 42194329 -142094333 + MLT1E3 LTR MaLR 1 624 0 772 191 0 0 chr4 42194342 42194473 -142094189 - FLAM_C SINE Alu -2 131 1 1230 106 0 0 chr4 42195154 42195314 -142093348 + AluSg/x SINE Alu 136 295 -17 1305 254 76 27 chr4 42195784 42196229 -142092433 - MLT1C LTR MaLR 0 467 1 2206 139 129 5 chr4 42197639 42198020 -142090642 + MSTA LTR MaLR 1 428 0 353 276 31 20 chr4 42198164 42198262 -142090400 - MLT1K LTR MaLR -346 242 144 1717 166 9 52 chr4 42198437 42198763 -142089899 - AluJo SINE Alu 0 312 1 1744 166 28 0 chr4 42198803 42199086 -142089576 - AluJo SINE Alu -21 291 1 2022 118 0 17 chr4 42200005 42200331 -142088331 + AluSx SINE Alu 1 321 0 1364 153 13 13 chr4 42200337 42200565 -142088097 + AluJo SINE Alu 5 232 -80 380 140 0 0 chr4 42200812 42200869 -142087793 + AluJo SINE Alu 235 291 -11 405 289 74 7 chr4 42202183 42202318 -142086344 - MER5B DNA MER1_type 0 178 35 2326 147 29 154 chr4 42202640 42203340 -142085322 + LTR9 LTR ERV1 1 612 0 1562 204 7 20 chr4 42203434 42203738 -142084924 + AluSx SINE Alu 1 300 -12 31 0 0 0 chr4 42203738 42203769 -142084893 + AT_rich Low_complexity Low_complexity 1 31 0 3037 158 72 2 chr4 42203849 42204442 -142084220 - L1MB7 LINE L1 -9 6175 5541 2349 122 51 46 chr4 42204949 42205368 -142083294 + LTR23 LTR ERV1 1 424 -13 2220 173 110 115 chr4 42205368 42206097 -142082565 + LTR8A LTR ERV1 1 725 -2 2349 122 51 46 chr4 42206097 42206112 -142082550 + LTR23 LTR ERV1 424 437 0 2367 100 0 0 chr4 42206307 42206607 -142082055 - AluSg SINE Alu -10 300 1 2223 197 76 15 chr4 42206630 42207102 -142081560 - LTR31 LTR ERV1 -15 604 104 744 292 6 38 chr4 42207349 42207685 -142080977 + L1ME LINE L1 5483 5810 -352 185 267 22 0 chr4 42207695 42207740 -142080922 + MER5A DNA MER1_type 12 57 -132 332 164 134 0 chr4 42207931 42207998 -142080664 + LTR43 LTR ERV1 1 76 -526 1917 135 58 15 chr4 42208016 42208342 -142080320 + LTR43 LTR ERV1 25 364 -238 2132 135 143 11 chr4 42208342 42208720 -142079942 + MSTA LTR MaLR 1 428 0 3958 119 11 63 chr4 42208722 42209387 -142079275 + MSTA-int LTR MaLR 3 632 -948 673 155 0 17 chr4 42209387 42209503 -142079159 + MLT1I LTR MaLR 296 409 0 1585 195 7 17 chr4 42210052 42210349 -142078313 - AluJo SINE Alu -18 294 1 1146 272 72 17 chr4 42211184 42211643 -142077019 - L2 LINE L2 -1 3312 2829 203 147 0 0 chr4 42211640 42211674 -142076988 + L2 LINE L2 3280 3313 0 * 205 331 57 32 chr4 42212375 42212499 -142076163 + MER5A DNA MER1_type 63 189 0 1622 198 47 48 chr4 42212881 42213361 -142075301 + MLT1F LTR MaLR 1 559 -8 959 214 90 53 chr4 42213446 42213768 -142074894 - L1ME3A LINE L1 -1 6169 5836 941 279 107 7 chr4 42213793 42213875 -142074787 - L1ME3A LINE L1 -852 5294 5222 1962 114 26 65 chr4 42213875 42214182 -142074480 - AluSx SINE Alu -17 295 1 941 279 107 7 chr4 42214182 42214537 -142074125 - L1ME3A LINE L1 -924 5222 4813 2398 171 42 133 chr4 42214551 42215315 -142073347 + LTR8A LTR ERV1 34 727 0 2384 76 0 13 chr4 42215328 42215632 -142073030 - AluY SINE Alu -11 300 1 256 268 0 0 chr4 42215645 42215716 -142072946 - L1ME3A LINE L1 -1592 4554 4484 962 75 0 45 chr4 42215721 42215855 -142072807 - L1PA8A LINE L1 -13 6118 5991 328 83 0 42 chr4 42215955 42216003 -142072659 - THE1C LTR MaLR -329 46 1 474 244 218 5 chr4 42216383 42216580 -142072082 + MIR SINE MIR 14 252 -10 211 320 110 35 chr4 42216964 42217164 -142071498 + L2 LINE L2 2845 3059 -254 265 220 70 20 chr4 42217181 42217281 -142071381 - LTR33 LTR ERVL -24 497 393 374 262 16 84 chr4 42217533 42217646 -142071016 + L2 LINE L2 3132 3228 -85 307 54 0 36 chr4 42217646 42217702 -142070960 + (TG)n Simple_repeat Simple_repeat 2 55 0 374 262 16 84 chr4 42217702 42217779 -142070883 + L2 LINE L2 3228 3309 -4 230 173 0 19 chr4 42218362 42218414 -142070248 + G-rich Low_complexity Low_complexity 1 51 0 549 205 31 16 chr4 42220276 42220403 -142068259 - L1ME3 LINE L1 -7 6155 6027 415 308 0 8 chr4 42221607 42221727 -142066935 + MIR SINE MIR 3 121 -141 568 209 8 30 chr4 42221798 42221932 -142066730 + MIR SINE MIR 130 260 -2 279 264 0 0 chr4 42221933 42222024 -142066638 + (TTA)n Simple_repeat Simple_repeat 2 92 0 217 244 0 0 chr4 42222506 42222551 -142066111 + CT-rich Low_complexity Low_complexity 4 48 0 208 217 0 0 chr4 42223798 42223844 -142064818 + (ATG)n Simple_repeat Simple_repeat 3 48 0 1979 151 51 43 chr4 42224481 42224853 -142063809 - THE1C LTR MaLR 0 375 1 2115 99 0 81 chr4 42225203 42225535 -142063127 + AluY SINE Alu 1 305 -6 23 54 0 0 chr4 42225718 42225755 -142062907 + AT_rich Low_complexity Low_complexity 1 37 0 412 312 138 4 chr4 42225945 42226198 -142062464 - L2 LINE L2 -15 3298 3012 540 310 29 36 chr4 42226845 42227126 -142061536 - MLT1J LTR MaLR -209 302 24 180 0 0 0 chr4 42227584 42227604 -142061058 + (TG)n Simple_repeat Simple_repeat 2 21 0 632 288 13 0 chr4 42228512 42228665 -142059997 - MIR SINE MIR -98 164 10 350 323 169 60 chr4 42230618 42231020 -142057642 - L2 LINE L2 0 3272 2827 498 233 214 37 chr4 42231177 42231392 -142057270 - MIR SINE MIR -4 258 6 2455 114 141 5 chr4 42231398 42231775 -142056887 + MSTA LTR MaLR 1 428 0 22 56 0 0 chr4 42232140 42232176 -142056486 + AT_rich Low_complexity Low_complexity 1 36 0 542 241 75 35 chr4 42232221 42232420 -142056242 - MLT1L LTR MaLR 0 615 409 27 29 0 0 chr4 42234225 42234259 -142054403 + AT_rich Low_complexity Low_complexity 1 34 0 703 150 56 50 chr4 42234460 42234620 -142054042 + L1MB7 LINE L1 6008 6168 -16 308 219 45 63 chr4 42234717 42234870 -142053792 - MLT1G LTR MaLR -13 577 421 264 287 43 17 chr4 42235003 42235118 -142053544 - MLT1I LTR MaLR -265 144 27 1965 174 59 50 chr4 42235236 42235660 -142053002 - MSTC LTR MaLR 0 428 1 678 260 96 23 chr4 42235920 42236139 -142052523 + MIR SINE MIR 28 262 0 290 312 178 7 chr4 42236152 42236428 -142052234 - L2 LINE L2 -530 2784 2462 2802 188 26 42 chr4 42236679 42237247 -142051415 - MLT1F1 LTR MaLR -8 559 1 2186 121 3 22 chr4 42237434 42237749 -142050913 - AluSx SINE Alu -3 309 1 186 43 0 0 chr4 42237766 42237789 -142050873 + (CCA)n Simple_repeat Simple_repeat 1 23 0 797 170 21 21 chr4 42237949 42238090 -142050572 - FLAM_C SINE Alu -1 142 2 180 111 0 0 chr4 42238108 42238135 -142050527 + (T)n Simple_repeat Simple_repeat 1 27 0 436 209 281 36 chr4 42238188 42238327 -142050335 - MER5B DNA MER1_type 0 178 6 256 224 0 0 chr4 42238677 42238726 -142049936 - L2 LINE L2 0 3313 3265 1217 241 30 45 chr4 42239124 42239460 -142049202 + MLT1H LTR MaLR 23 353 -196 952 193 45 5 chr4 42239474 42239676 -142048986 - MER20 DNA MER1_type -4 215 6 236 208 151 0 chr4 42239697 42239750 -142048912 + MLT1L LTR MaLR 343 403 -146 205 286 174 0 chr4 42240294 42240392 -142048270 + L2 LINE L2 2933 3047 -225 1757 159 7 7 chr4 42240446 42240735 -142047927 - AluJo SINE Alu -23 289 1 330 380 7 15 chr4 42240827 42240964 -142047698 - L2 LINE L2 -18 3254 3119 275 373 0 17 chr4 42241235 42241353 -142047309 + MER5B DNA MER1_type 4 119 -59 210 193 0 0 chr4 42241353 42241410 -142047252 + (TA)n Simple_repeat Simple_repeat 2 58 0 232 239 0 0 chr4 42241410 42241456 -142047206 + MER5B DNA MER1_type 128 173 -5 468 260 50 98 chr4 42241490 42241828 -142046834 - L2 LINE L2 -1195 2119 1798 2428 60 0 13 chr4 42241851 42242152 -142046510 - AluY SINE Alu -14 297 1 653 258 7 0 chr4 42243984 42244139 -142044523 + MIR SINE MIR 90 245 -17 2965 149 149 2 chr4 42244563 42245119 -142043543 + L1MD3 LINE L1 7356 7993 -2 1129 231 73 55 chr4 42245243 42245624 -142043038 - L2 LINE L2 -36 3277 2890 2147 107 10 3 chr4 42245859 42246157 -142042505 + AluSx SINE Alu 1 300 -12 2316 89 0 32 chr4 42248339 42248652 -142040010 - AluSq SINE Alu -10 303 1 1167 249 128 19 chr4 42248833 42249295 -142039367 - L2 LINE L2 0 3313 2756 195 69 0 0 chr4 42249628 42249657 -142039005 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 2148 109 16 7 chr4 42249728 42250032 -142038630 + AluSx SINE Alu 1 307 -5 392 276 157 33 chr4 42250155 42250365 -142038297 + MLT1L LTR MaLR 150 385 -230 330 274 105 8 chr4 42250391 42250515 -142038147 + MLT1L LTR MaLR 475 610 -5 360 257 34 84 chr4 42250793 42251030 -142037632 - L1M4 LINE L1 -3525 2621 2397 729 12 0 0 chr4 42251319 42251401 -142037261 - L1PA3 LINE L1 -1 6154 6073 400 222 109 154 chr4 42252734 42252795 -142035867 - MIR SINE MIR -51 211 149 2122 84 27 34 chr4 42252795 42253091 -142035571 - AluSc SINE Alu -15 294 1 400 222 109 154 chr4 42253091 42253250 -142035412 - MIR SINE MIR -113 149 1 195 167 28 0 chr4 42253325 42253361 -142035301 - L3b LINE CR1 -8 1575 1539 10513 30 0 0 chr4 42254004 42255228 -142033434 - L1PA3 LINE L1 -856 5290 4067 7899 25 1 0 chr4 42255228 42256098 -142032564 + L1PA3 LINE L1 5283 6154 -1 2276 114 0 0 chr4 42256409 42256715 -142031947 + AluSx SINE Alu 2 307 -5 451 232 20 0 chr4 42257181 42257280 -142031382 - MLT1I LTR MaLR -15 394 294 2211 116 0 3 chr4 42257605 42257898 -142030764 + AluSx SINE Alu 1 292 -20 565 161 93 0 chr4 42258785 42258903 -142029759 + L1MA4 LINE L1 6172 6300 0 527 237 0 0 chr4 42309270 42309388 -141979274 + MIR SINE MIR 132 249 -13 959 140 35 0 chr4 42309556 42309727 -141978935 - L1MB3 LINE L1 0 6183 6007 522 334 78 22 chr4 42311782 42312282 -141976380 + L2 LINE L2 1744 2271 -1043 213 320 175 21 chr4 42312995 42313092 -141975570 + L2 LINE L2 3136 3247 -25 223 344 32 39 chr4 42313113 42313267 -141975395 + L3 LINE CR1 1424 1576 -1 462 310 65 10 chr4 42314168 42314368 -141974294 - MIR SINE MIR 0 262 52 236 235 20 0 chr4 42314565 42314616 -141974046 - L2 LINE L2 -15 3257 3206 396 0 0 0 chr4 42316059 42316103 -141972559 + (CA)n Simple_repeat Simple_repeat 2 45 0 1476 252 57 12 chr4 42317469 42317890 -141970772 + MLT1J1 LTR MaLR 1 440 -6 189 306 56 0 chr4 42318341 42318413 -141970249 - MIR SINE MIR -76 132 57 252 310 85 64 chr4 42318606 42318996 -141969666 - L2 LINE L2 -935 2379 1982 268 348 36 0 chr4 42319090 42319202 -141969460 - L3 LINE CR1 -1008 569 454 421 261 46 31 chr4 42319281 42319411 -141969251 + MER94 DNA DNA 1 132 -2 335 267 181 19 chr4 42319913 42320018 -141968644 - L2 LINE L2 0 3313 3192 1080 196 28 14 chr4 42320842 42321078 -141967584 - AluJb SINE Alu 0 305 67 401 211 86 97 chr4 42321777 42321952 -141966710 - MER104 DNA Tc2 -5 175 3 397 349 29 34 chr4 42321968 42322177 -141966485 - L2 LINE L2 -850 2464 2257 862 164 7 33 chr4 42322437 42322589 -141966073 + AluJo SINE Alu 6 153 -159 666 272 53 19 chr4 42322727 42322933 -141965729 + MIR SINE MIR 3 215 -47 195 162 0 0 chr4 42322980 42323017 -141965645 + GA-rich Low_complexity Low_complexity 3 39 0 2006 116 0 0 chr4 42323164 42323422 -141965240 + AluSq SINE Alu 1 258 -55 198 233 174 35 chr4 42323488 42323574 -141965088 - L2 LINE L2 -21 3251 3154 487 294 28 33 chr4 42324382 42324562 -141964100 + MIR3 SINE MIR 19 197 -11 422 268 71 0 chr4 42324595 42324722 -141963940 - MIR SINE MIR -6 256 121 368 230 46 0 chr4 42326581 42326668 -141961994 + MIR SINE MIR 72 162 -100 1152 255 90 53 chr4 42328498 42328933 -141959729 - MLT1J LTR MaLR -60 451 1 194 333 0 16 chr4 42329189 42329252 -141959410 - L2 LINE L2 -196 3076 3015 290 271 114 65 chr4 42329324 42329586 -141959076 - MLT1K LTR MaLR -151 437 163 534 227 107 70 chr4 42329668 42329910 -141958752 + L2 LINE L2 3058 3308 -5 2111 121 0 0 chr4 42330982 42331263 -141957399 - AluSx SINE Alu -31 281 1 26 0 0 0 chr4 42331265 42331291 -141957371 + AT_rich Low_complexity Low_complexity 1 26 0 254 71 0 24 chr4 42331666 42331708 -141956954 + (GA)n Simple_repeat Simple_repeat 1 41 0 2118 156 36 46 chr4 42331843 42332259 -141956403 - L1MA7 LINE L1 0 6291 5880 486 274 51 25 chr4 42332281 42332438 -141956224 + MIR SINE MIR 46 206 -56 308 229 10 62 chr4 42332454 42332550 -141956112 + L1MC4 LINE L1 6613 6703 -1339 303 157 37 46 chr4 42332550 42332658 -141956004 + (CATATA)n Simple_repeat Simple_repeat 2 108 0 23 33 0 0 chr4 42333591 42333621 -141955041 + AT_rich Low_complexity Low_complexity 1 30 0 693 267 92 5 chr4 42334438 42334655 -141954007 - MIR SINE MIR 0 262 27 766 226 81 60 chr4 42334839 42335074 -141953588 - MIR SINE MIR -18 244 5 212 162 0 0 chr4 42335096 42335133 -141953529 + MIR SINE MIR 170 206 -56 411 318 0 31 chr4 42337349 42337478 -141951184 + L2 LINE L2 3148 3272 0 378 0 0 0 chr4 42338129 42338171 -141950491 + (TG)n Simple_repeat Simple_repeat 2 43 0 742 232 59 32 chr4 42338265 42338485 -141950177 - MER112 DNA MER1_type -6 254 29 2121 132 0 0 chr4 42338588 42338884 -141949778 + AluSx SINE Alu 1 296 -16 629 318 81 0 chr4 42338908 42339144 -141949518 - MIR SINE MIR 0 262 8 2618 154 41 30 chr4 42340187 42340466 -141948196 - MLT1C LTR MaLR -1 466 192 234 0 0 0 chr4 42340466 42340492 -141948170 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1913 138 7 3 chr4 42340494 42340776 -141947886 - AluSq SINE Alu -30 283 1 2618 154 41 30 chr4 42340776 42340954 -141947708 - MLT1C LTR MaLR -275 192 1 2515 169 24 14 chr4 42343597 42344011 -141944651 + MER47B DNA MER2_type 1 418 0 270 279 117 9 chr4 42344713 42344824 -141943838 + MIR SINE MIR 104 226 -36 731 166 13 76 chr4 42345143 42345300 -141943362 - BC200 scRNA scRNA -53 147 1 636 275 50 18 chr4 42347539 42347761 -141940901 + MIR SINE MIR 28 256 -6 799 200 35 0 chr4 42348063 42348233 -141940429 + MER104 DNA MER2_type 4 179 -1 22 35 0 0 chr4 42349281 42349310 -141939352 + AT_rich Low_complexity Low_complexity 1 29 0 939 230 92 18 chr4 42349400 42349782 -141938880 - L1ME4a LINE L1 0 6121 5712 21 0 0 0 chr4 42351650 42351671 -141936991 + AT_rich Low_complexity Low_complexity 1 21 0 1524 123 0 0 chr4 42352594 42352606 -141936056 - AluSq SINE Alu -20 293 282 351 0 0 0 chr4 42352606 42352645 -141936017 + (TG)n Simple_repeat Simple_repeat 1 39 0 1524 123 0 0 chr4 42352645 42352844 -141935818 - AluSq SINE Alu -30 283 82 595 178 105 40 chr4 42353157 42353207 -141935455 + MER5B DNA MER1_type 1 46 -132 1588 168 3 71 chr4 42353207 42353529 -141935133 + AluJo SINE Alu 1 300 -12 595 178 105 40 chr4 42353529 42353630 -141935032 + MER5B DNA MER1_type 46 162 -16 390 239 46 28 chr4 42353749 42353858 -141934804 - L2 LINE L2 -2 3311 3201 348 169 146 0 chr4 42354313 42354402 -141934260 - Charlie4 DNA MER1_type -16 1945 1844 1140 102 45 0 chr4 42356425 42356582 -141932080 + AluSc SINE Alu 128 291 -18 890 134 8 15 chr4 42357321 42357455 -141931207 + FLAM_C SINE Alu 1 133 0 21 36 0 0 chr4 42357455 42357483 -141931179 + AT_rich Low_complexity Low_complexity 1 28 0 2664 125 14 8 chr4 42358165 42358525 -141930137 - THE1B LTR MaLR 0 364 3 564 283 66 28 chr4 42358565 42358777 -141929885 + MIR SINE MIR 24 243 -19 744 173 154 0 chr4 42358913 42359075 -141929587 - MER5A DNA MER1_type -2 187 1 387 0 0 0 chr4 42360869 42360912 -141927750 + (CA)n Simple_repeat Simple_repeat 2 44 0 623 95 0 25 chr4 42361148 42361379 -141927283 + AluSg SINE Alu 1 303 -7 2206 119 0 0 chr4 42361564 42361859 -141926803 + AluSx SINE Alu 6 300 -12 372 346 31 12 chr4 42362314 42362476 -141926186 + MIR SINE MIR 78 242 -20 261 344 119 13 chr4 42363158 42363309 -141925353 - L2 LINE L2 0 3272 3106 397 222 19 28 chr4 42364000 42364021 -141924641 + MER103 DNA DNA 18 38 -128 2210 165 5 16 chr4 42364021 42364391 -141924271 - MER47A DNA MER2_type 0 366 1 397 222 19 28 chr4 42364391 42364477 -141924185 + MER103 DNA DNA 38 124 -42 328 216 0 34 chr4 42364548 42364636 -141924026 - Zaphod DNA AcHobo -5 4026 3942 2092 134 7 0 chr4 42366352 42366644 -141922018 + AluSx SINE Alu 1 294 -18 1887 108 15 8 chr4 42366644 42366910 -141921752 + AluSp SINE Alu 44 313 0 660 295 43 17 chr4 42367042 42367276 -141921386 - MIR SINE MIR -3 259 20 207 0 0 0 chr4 42367309 42367332 -141921330 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2074 57 4 0 chr4 42367412 42367657 -141921005 - L1PA7 LINE L1 -4 6150 5905 754 156 14 57 chr4 42371011 42371152 -141917510 + AluJb SINE Alu 157 291 -21 905 110 59 7 chr4 42371162 42371298 -141917364 + L1PA10 LINE L1 6025 6167 -1 2185 125 6 6 chr4 42372136 42372448 -141916214 - AluSx SINE Alu 0 312 1 476 273 91 7 chr4 42375802 42375945 -141912717 - MIR SINE MIR -55 207 53 647 199 81 0 chr4 42376047 42376183 -141912479 + MIR SINE MIR 33 179 -83 266 278 67 22 chr4 42378248 42378338 -141910324 - L2 LINE L2 -40 3232 3139 413 329 57 0 chr4 42378349 42378507 -141910155 - MIR3 SINE MIR -11 197 31 504 308 141 34 chr4 42379575 42379809 -141908853 + L2 LINE L2 3014 3272 0 207 298 0 0 chr4 42379810 42379857 -141908805 + MIR SINE MIR 23 69 -139 2163 109 0 50 chr4 42380936 42381257 -141907405 + AluSx SINE Alu 1 305 -7 313 274 195 40 chr4 42381429 42381655 -141907007 + MIR SINE MIR 1 261 -1 212 177 44 44 chr4 42383011 42383124 -141905538 + (TA)n Simple_repeat Simple_repeat 2 114 0 839 274 103 21 chr4 42384060 42384577 -141904085 - L1ME LINE L1 -298 5823 5265 28 61 0 0 chr4 42384664 42384713 -141903949 + AT_rich Low_complexity Low_complexity 1 49 0 364 339 42 10 chr4 42384861 42385150 -141903512 - L1ME LINE L1 -1177 4969 4672 264 119 46 184 chr4 42385945 42386054 -141902608 - MER53 DNA DNA 0 189 96 * 294 174 29 0 chr4 42385990 42386059 -141902603 + MER53 DNA DNA 36 106 -83 428 240 16 0 chr4 42386066 42386187 -141902475 - MER53 DNA DNA -65 124 2 383 286 11 0 chr4 42386400 42386491 -141902171 - MER5A DNA MER1_type -89 100 9 200 94 19 75 chr4 42386812 42386865 -141901797 + (TTTTTG)n Simple_repeat Simple_repeat 1 50 0 237 146 0 0 chr4 42388444 42388492 -141900170 + (A)n Simple_repeat Simple_repeat 1 48 0 2061 145 3 3 chr4 42389872 42390183 -141898479 - AluJb SINE Alu -1 311 1 2328 84 7 7 chr4 42390454 42390753 -141897909 - AluSq SINE Alu -14 299 1 263 216 85 111 chr4 42391143 42391296 -141897366 - MER102b DNA MER1_type -1 340 192 230 236 36 18 chr4 42391873 42391928 -141896734 - MIR SINE MIR -59 149 94 2366 143 48 21 chr4 42392170 42392591 -141896071 - MSTB1 LTR MaLR 0 432 1 21 0 0 0 chr4 42393778 42393799 -141894863 + AT_rich Low_complexity Low_complexity 1 21 0 318 259 98 0 chr4 42393867 42393979 -141894683 + L1ME4a LINE L1 5321 5443 -721 820 121 8 15 chr4 42393983 42394115 -141894547 + AluJb SINE Alu 1 131 -181 625 291 53 27 chr4 42394260 42394546 -141894116 + L1ME3A LINE L1 5257 5557 -613 5071 85 36 1 chr4 42394546 42395262 -141893400 + L1PA11 LINE L1 5434 6174 0 625 291 53 27 chr4 42395262 42395350 -141893312 + L1ME3A LINE L1 5557 5641 -529 367 294 31 31 chr4 42395451 42395614 -141893048 + L1ME3A LINE L1 5789 5951 -219 272 295 98 34 chr4 42395798 42396032 -141892630 - L1ME LINE L1 -557 5613 5365 1747 151 44 4 chr4 42396111 42396433 -141892229 - AluSx SINE Alu 0 333 1 609 284 99 3 chr4 42396579 42396941 -141891721 - L1ME LINE L1 -1176 4970 4574 335 263 143 8 chr4 42396947 42397198 -141891464 - L1ME LINE L1 -1785 4361 4077 331 262 33 33 chr4 42397194 42397377 -141891285 + L1ME4a LINE L1 5705 5887 -234 * 1881 174 0 3 chr4 42397380 42397685 -141890977 + AluJb SINE Alu 1 304 -8 347 105 18 0 chr4 42397738 42397795 -141890867 + (TA)n Simple_repeat Simple_repeat 1 58 0 933 233 11 0 chr4 42398540 42398720 -141889942 + MIR SINE MIR 20 201 -61 325 292 83 24 chr4 42399007 42399175 -141889487 + L1ME4a LINE L1 5942 6119 -2 194 31 0 62 chr4 42400258 42400290 -141888372 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 1823 153 28 3 chr4 42400353 42400640 -141888022 + AluSx SINE Alu 1 294 -18 2792 92 0 4 chr4 42401287 42401696 -141886966 + L1PA8 LINE L1 5746 6151 -21 389 304 96 72 chr4 42402256 42402727 -141885935 + MLT1L LTR MaLR 107 615 0 2260 163 30 2 chr4 42402868 42403273 -141885389 - MSTB LTR MaLR 0 426 11 22 56 0 0 chr4 42403704 42403740 -141884922 + AT_rich Low_complexity Low_complexity 1 36 0 1186 127 0 50 chr4 42405841 42406062 -141882600 + MLT1C LTR MaLR 1 210 -257 1426 190 56 0 chr4 42406092 42406361 -141882301 + MLT1C LTR MaLR 184 467 0 346 304 27 18 chr4 42406599 42406711 -141881951 + MIR3 SINE MIR 92 204 -4 558 246 24 8 chr4 42407099 42407225 -141881437 - MIR SINE MIR -95 167 40 1725 180 26 7 chr4 42407230 42407536 -141881126 - AluJo SINE Alu 0 312 1 25 0 0 0 chr4 42408089 42408114 -141880548 + AT_rich Low_complexity Low_complexity 1 25 0 334 351 155 7 chr4 42408197 42408345 -141880317 - L2 LINE L2 -1 3271 3102 199 281 0 0 chr4 42408364 42408421 -141880241 + L2 LINE L2 3257 3313 0 318 276 95 9 chr4 42408434 42408550 -141880112 - L2 LINE L2 -181 3091 2966 224 393 23 17 chr4 42408676 42408849 -141879813 - L2 LINE L2 -459 2855 2682 629 247 150 68 chr4 42409034 42409526 -141879136 - MLT1H1 LTR MaLR -8 547 19 499 331 149 14 chr4 42409544 42409913 -141878749 - L2 LINE L2 -889 2425 2007 292 167 0 33 chr4 42409946 42410006 -141878656 - MLT1I LTR MaLR -6 403 346 1185 90 6 0 chr4 42410006 42410183 -141878479 + MER41B LTR ERV1 1 178 -457 866 158 30 6 chr4 42410184 42410349 -141878313 + MER41A LTR ERV1 386 554 0 215 229 0 0 chr4 42410701 42410749 -141877913 - L2 LINE L2 -1357 1957 1910 301 143 0 0 chr4 42412322 42412378 -141876284 + L1PA15 LINE L1 6110 6165 0 2160 116 30 0 chr4 42412381 42412684 -141875978 + AluSx SINE Alu 1 312 0 186 43 0 0 chr4 42413015 42413038 -141875624 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 2151 94 38 7 chr4 42413583 42413870 -141874792 + AluSg SINE Alu 1 296 -14 180 0 0 0 chr4 42415004 42415024 -141873638 + (TAAAAA)n Simple_repeat Simple_repeat 5 24 0 281 250 14 0 chr4 42416317 42416389 -141872273 - MLT1K LTR MaLR -24 564 492 684 278 100 14 chr4 42417156 42417538 -141871124 - MLT1J LTR MaLR -53 458 1 264 258 117 62 chr4 42418488 42418616 -141870046 + MIR SINE MIR 112 246 -16 268 246 15 15 chr4 42419023 42419088 -141869574 + L2 LINE L2 3249 3313 0 323 335 22 75 chr4 42419716 42419994 -141868668 - L2 LINE L2 -455 2859 2597 482 217 65 16 chr4 42420714 42420898 -141867764 - MER113 DNA MER1_type? -326 195 3 234 167 71 0 chr4 42420997 42421039 -141867623 + MIR SINE MIR 128 172 -90 370 282 50 55 chr4 42421687 42421868 -141866794 + MIR SINE MIR 23 202 -60 820 260 55 28 chr4 42422597 42422851 -141865811 + MIR SINE MIR 2 262 0 1936 121 50 0 chr4 42423423 42423705 -141864957 - AluSq SINE Alu -17 296 1 736 214 108 72 chr4 42423947 42424313 -141864349 - MLT1J LTR MaLR -120 330 1 258 255 66 38 chr4 42424398 42424504 -141864158 + L1MC/D LINE L1 5796 5904 -1904 646 119 19 6 chr4 42425096 42425112 -141863550 - L1ME LINE L1 -516 5605 5591 1918 156 0 0 chr4 42425112 42425426 -141863236 - AluSx SINE Alu 0 314 1 3829 108 6 2 chr4 42425426 42425936 -141862726 - L1PA15 LINE L1 -16 6149 5638 646 119 19 6 chr4 42425936 42426046 -141862616 - L1ME LINE L1 -529 5592 5475 1949 135 3 0 chr4 42426193 42426496 -141862166 - AluSq SINE Alu 0 304 1 804 152 0 0 chr4 42426995 42427120 -141861542 - L1MB7 LINE L1 -19 6165 6041 2173 129 3 0 chr4 42427171 42427481 -141861181 + AluSq SINE Alu 1 311 -2 382 380 78 0 chr4 42427569 42427774 -141860888 + MIR SINE MIR 28 248 -14 197 293 240 0 chr4 42428175 42428250 -141860412 + MIR SINE MIR 7 99 -163 328 263 11 42 chr4 42428656 42428751 -141859911 - Charlie4a DNA MER1_type -7 501 410 1680 140 31 20 chr4 42428765 42429057 -141859605 + L1MA8 LINE L1 5990 6284 -7 29 47 0 0 chr4 42429058 42429101 -141859561 + AT_rich Low_complexity Low_complexity 1 43 0 1777 186 58 13 chr4 42429117 42429510 -141859152 - Charlie4a DNA MER1_type -97 411 1 808 275 24 40 chr4 42430161 42430412 -141858250 + MIR SINE MIR 13 259 -3 315 293 140 18 chr4 42430638 42430802 -141857860 - MIR SINE MIR 0 262 79 1287 190 34 78 chr4 42431945 42432266 -141856396 - AluJo SINE Alu -5 307 1 904 131 29 0 chr4 42432740 42432877 -141855785 - MER5A DNA MER1_type -48 141 1 398 337 20 45 chr4 42432882 42433081 -141855581 + MIR SINE MIR 17 210 -52 230 160 0 40 chr4 42433521 42433596 -141855066 + A-rich Low_complexity Low_complexity 1 72 0 215 336 0 0 chr4 42434778 42434897 -141853765 + T-rich Low_complexity Low_complexity 1 119 0 210 71 0 0 chr4 42435294 42435322 -141853340 + (CCG)n Simple_repeat Simple_repeat 3 30 0 307 288 73 68 chr4 42435446 42435637 -141853025 + L1M2 LINE L1 687 878 -5971 25 51 0 0 chr4 42437488 42437527 -141851135 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr4 42439032 42439054 -141849608 + AT_rich Low_complexity Low_complexity 1 22 0 213 309 0 0 chr4 42442926 42442981 -141845681 + MIR SINE MIR 200 254 -8 216 0 0 0 chr4 42444026 42444050 -141844612 + (TC)n Simple_repeat Simple_repeat 1 24 0 391 378 38 24 chr4 42444109 42444606 -141844056 + L2 LINE L2 1396 1899 -1415 1207 255 43 23 chr4 42444650 42444952 -141843710 + MLT1I LTR MaLR 7 314 -95 381 337 20 40 chr4 42444965 42445167 -141843495 - L2 LINE L2 -219 3053 2856 183 80 0 0 chr4 42445595 42445620 -141843042 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 536 146 10 0 chr4 42446839 42446942 -141841720 + CT-rich Low_complexity Low_complexity 3 106 0 29 0 0 0 chr4 42447814 42447843 -141840819 + AT_rich Low_complexity Low_complexity 1 29 0 703 227 43 138 chr4 42447849 42448290 -141840372 - L1ME4a LINE L1 -236 5885 5487 2103 122 0 3 chr4 42448477 42448787 -141839875 - AluSq SINE Alu 0 309 1 37 0 0 0 chr4 42448920 42448957 -141839705 + AT_rich Low_complexity Low_complexity 1 37 0 1423 144 0 92 chr4 42448959 42449230 -141839432 - AluJb SINE Alu -66 246 1 1151 226 32 63 chr4 42449593 42450066 -141838596 - L1MC5 LINE L1 -51 7910 7453 2099 118 6 16 chr4 42450074 42450388 -141838274 + AluSx SINE Alu 1 311 -1 404 152 25 0 chr4 42450388 42450467 -141838195 + GA-rich Low_complexity Low_complexity 1 81 0 325 257 144 8 chr4 42450482 42450732 -141837930 - L1MC5 LINE L1 -527 7478 7260 * 1303 158 123 145 chr4 42450726 42451296 -141837366 - L1MC4a LINE L1 -632 7232 6700 413 258 114 30 chr4 42451518 42451685 -141836977 - L2 LINE L2 -202 3070 2890 * 1434 292 77 10 chr4 42451680 42452160 -141836502 + L3 LINE CR1 355 866 -711 4683 112 5 0 chr4 42452259 42452896 -141835766 + L1PA13 LINE L1 5522 6161 -2 316 272 41 124 chr4 42453080 42453249 -141835413 + L3 LINE CR1 1265 1419 -158 216 286 0 0 chr4 42453526 42453568 -141835094 + MIR SINE MIR 28 69 -139 939 252 24 19 chr4 42453596 42453806 -141834856 + MLT1H1 LTR MaLR 2 212 -343 189 0 0 0 chr4 42453822 42453843 -141834819 + (GA)n Simple_repeat Simple_repeat 2 22 0 588 214 78 58 chr4 42453880 42454034 -141834628 + MLT1G1 LTR MaLR 439 595 0 345 286 31 0 chr4 42454037 42454135 -141834527 + MIR3 SINE MIR 95 195 -13 2393 193 35 2 chr4 42454151 42454637 -141834025 - Charlie1b DNA MER1_type -21 502 1 1926 82 11 32 chr4 42455822 42456103 -141832559 + L1MA1 LINE L1 6028 6302 0 4196 197 45 85 chr4 42456915 42457852 -141830810 + L1MD2 LINE L1 5057 5926 -433 2157 108 7 19 chr4 42457852 42458159 -141830503 + AluSq SINE Alu 1 303 -10 4196 197 45 85 chr4 42458159 42458564 -141830098 + L1MD2 LINE L1 5926 6346 -13 655 303 32 0 chr4 42458775 42458930 -141829732 + MLT1I LTR MaLR 42 201 -208 311 249 167 90 chr4 42459074 42459476 -141829186 + L1ME4a LINE L1 5550 5982 -139 * 807 264 135 19 chr4 42459445 42460102 -141828560 + L1MC4a LINE L1 5171 5396 -750 311 215 141 15 chr4 42460361 42460496 -141828166 + L1ME4a LINE L1 5968 6119 -2 904 30 0 0 chr4 42460987 42461087 -141827575 + L1PA7 LINE L1 6052 6151 -3 707 255 19 0 chr4 42461153 42461310 -141827352 - U1 snRNA snRNA -3 162 3 303 305 112 15 chr4 42461392 42461521 -141827141 + MIR3 SINE MIR 14 158 -50 2001 65 40 0 chr4 42461588 42461836 -141826826 - L1PA8 LINE L1 -3 6169 5912 371 62 0 0 chr4 42461837 42461885 -141826777 + L1P LINE L1 5343 5390 -741 733 317 61 28 chr4 42461947 42462310 -141826352 - MLT1K LTR MaLR -113 475 101 213 299 45 0 chr4 42462414 42462481 -141826181 + MIR SINE MIR 172 241 -21 306 284 101 0 chr4 42462613 42462722 -141825940 + MER117 DNA MER1_type 21 140 -57 1973 121 36 0 chr4 42462840 42463121 -141825541 + AluJo SINE Alu 1 291 -21 242 222 189 33 chr4 42463192 42463282 -141825380 + L2 LINE L2 3168 3271 -1 22 35 0 0 chr4 42463407 42463436 -141825226 + AT_rich Low_complexity Low_complexity 1 29 0 526 323 124 4 chr4 42463954 42464180 -141824482 + MIR SINE MIR 10 262 0 1486 193 167 44 chr4 42464860 42465310 -141823352 + MLT1D LTR MaLR 1 505 0 324 0 0 0 chr4 42465330 42465366 -141823296 + (TG)n Simple_repeat Simple_repeat 2 37 0 422 264 37 48 chr4 42465370 42465406 -141823256 - MIR3 SINE MIR -67 141 106 1982 145 3 0 chr4 42465406 42465702 -141822960 - AluSx SINE Alu -15 297 1 422 264 37 48 chr4 42465702 42465854 -141822808 - MIR3 SINE MIR -102 106 4 524 268 97 63 chr4 42465943 42466324 -141822338 - L1MCc LINE L1 -5223 1200 807 31 58 0 0 chr4 42467618 42467670 -141820992 + AT_rich Low_complexity Low_complexity 1 52 0 304 293 72 65 chr4 42467735 42468025 -141820637 + HAL1 LINE L1 849 1140 -1367 1691 190 3 7 chr4 42468048 42468348 -141820314 + AluJb SINE Alu 1 299 -13 339 85 0 0 chr4 42468521 42468568 -141820094 + (CA)n Simple_repeat Simple_repeat 2 48 0 2258 173 45 28 chr4 42468570 42468992 -141819670 + Tigger2a DNA MER2_type 5 433 -1 1042 99 0 0 chr4 42469487 42469629 -141819033 + AluSp/q SINE Alu 160 301 -12 2031 138 0 0 chr4 42469760 42470078 -141818584 - AluSx SINE Alu 0 318 1 849 286 31 12 chr4 42470105 42470360 -141818302 - MIR SINE MIR -1 261 2 263 209 122 96 chr4 42470462 42470577 -141818085 + L2 LINE L2 2844 2961 -352 242 311 120 12 chr4 42470640 42470807 -141817855 + L2 LINE L2 3118 3302 -11 355 316 88 7 chr4 42471080 42471216 -141817446 - MIR SINE MIR -115 147 1 261 119 51 0 chr4 42471315 42471374 -141817288 - MER96B DNA MER1_type? -61 356 295 922 142 171 17 chr4 42471379 42471555 -141817107 + AluSg/x SINE Alu 89 291 -21 216 0 0 0 chr4 42471555 42471579 -141817083 + (CA)n Simple_repeat Simple_repeat 2 25 0 749 198 23 23 chr4 42471693 42471870 -141816792 - MER96B DNA MER1_type? -238 179 3 310 148 13 0 chr4 42471996 42472052 -141816610 + AluS SINE Alu 224 271 -29 2252 113 3 0 chr4 42472371 42472664 -141815998 + AluSx SINE Alu 1 294 -18 300 53 0 0 chr4 42472703 42472741 -141815921 + (TA)n Simple_repeat Simple_repeat 2 39 0 247 36 0 0 chr4 42472952 42472980 -141815682 - AluY SINE Alu -256 44 17 355 307 88 7 chr4 42477025 42477162 -141811500 - MIR SINE MIR -109 153 6 291 93 0 0 chr4 42477484 42477527 -141811135 + (GA)n Simple_repeat Simple_repeat 2 44 0 649 236 94 43 chr4 42478082 42478315 -141810347 + MIR SINE MIR 6 250 -12 26 0 0 0 chr4 42478960 42478986 -141809676 + AT_rich Low_complexity Low_complexity 1 26 0 2947 132 21 12 chr4 42479264 42479688 -141808974 - MSTA LTR MaLR 0 428 1 213 379 48 0 chr4 42479818 42479921 -141808741 - MIR SINE MIR -153 109 2 400 188 196 80 chr4 42480316 42480454 -141808208 - MIR SINE MIR -101 161 8 238 238 138 129 chr4 42480477 42480717 -141807945 + L3 LINE CR1 1303 1544 -33 209 148 19 74 chr4 42480929 42480983 -141807679 + L3 LINE CR1 1527 1577 0 1331 274 64 9 chr4 42481093 42481572 -141807090 + L2 LINE L2 2540 3039 -274 304 312 91 19 chr4 42481572 42481726 -141806936 - MER91B DNA MER1_type 0 190 26 837 207 60 56 chr4 42481751 42482017 -141806645 + L2 LINE L2 3047 3313 0 765 177 158 13 chr4 42483822 42483980 -141804682 + MER5A DNA MER1_type 9 189 0 2053 121 16 3 chr4 42486920 42487226 -141801436 - AluSx SINE Alu -2 310 1 993 164 11 11 chr4 42487399 42487576 -141801086 + FRAM SINE Alu 1 176 0 252 157 57 0 chr4 42488152 42488222 -141800440 - L1ME4a LINE L1 -1 6120 6047 1574 171 45 11 chr4 42489074 42489360 -141799302 + AluJb SINE Alu 1 296 -16 1912 204 29 74 chr4 42489363 42489428 -141799234 - MLT1F1 LTR MaLR -103 464 398 1743 192 6 9 chr4 42489428 42489745 -141798917 + L1MB3 LINE L1 5861 6176 -7 1912 204 29 74 chr4 42489745 42490165 -141798497 - MLT1F1 LTR MaLR -169 398 1 1288 243 123 41 chr4 42490165 42490562 -141798100 + L2 LINE L2 2656 3103 -210 2277 127 38 57 chr4 42490562 42490720 -141797942 + THE1B LTR MaLR 1 160 -204 2304 113 0 0 chr4 42490720 42491021 -141797641 - AluSx SINE Alu -11 301 1 2277 127 38 57 chr4 42491021 42491233 -141797429 + THE1B LTR MaLR 160 364 0 1288 243 123 41 chr4 42491233 42491456 -141797206 + L2 LINE L2 3103 3306 -7 2195 126 0 0 chr4 42492042 42492343 -141796319 + AluSx SINE Alu 6 306 -6 222 315 140 21 chr4 42492540 42492683 -141795979 + MIR SINE MIR 20 179 -83 244 197 158 13 chr4 42492743 42492819 -141795843 + MIR SINE MIR 170 256 -6 508 219 19 0 chr4 42492862 42492967 -141795695 + MER81 DNA DNA 1 107 -7 538 234 130 87 chr4 42493171 42493402 -141795260 - MIR SINE MIR -6 256 16 2038 127 34 0 chr4 42493581 42493873 -141794789 + AluSx SINE Alu 7 308 -4 283 301 62 9 chr4 42494254 42494367 -141794295 + MIR3 SINE MIR 81 199 -9 992 144 0 0 chr4 42494566 42494739 -141793923 - AluSg/x SINE Alu 0 314 142 1171 180 45 0 chr4 42496622 42496822 -141791840 + MER3 DNA MER1_type 1 209 0 806 261 28 28 chr4 42496822 42497022 -141791640 + MIR SINE MIR 15 217 -45 715 225 32 59 chr4 42497076 42497263 -141791399 + MER20 DNA MER1_type 37 218 -1 845 242 183 45 chr4 42497493 42497849 -141790813 + L2 LINE L2 2908 3312 -1 206 333 0 0 chr4 42499140 42499188 -141789474 + L2 LINE L2 3153 3200 -72 917 185 114 17 chr4 42499306 42499593 -141789069 - MER33 DNA MER1_type 0 324 50 5434 147 79 11 chr4 42499593 42500442 -141788220 - L1MC1 LINE L1 -39 6294 5358 2191 127 44 41 chr4 42500442 42500805 -141787857 - THE1B LTR MaLR 0 364 1 5434 147 79 11 chr4 42500805 42500988 -141787674 - L1MC1 LINE L1 -975 5358 5189 453 170 0 0 chr4 42501006 42501080 -141787582 - MER33 DNA MER1_type -259 65 1 1212 188 151 0 chr4 42501148 42501393 -141787269 + AluJo SINE Alu 1 282 -30 189 74 0 0 chr4 42501401 42501428 -141787234 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 432 323 7 0 chr4 42501449 42501604 -141787058 - L2 LINE L2 -1023 2291 2136 975 303 126 15 chr4 42501616 42502085 -141786577 + L2 LINE L2 2291 2811 -503 466 301 84 0 chr4 42502290 42502433 -141786229 + L2 LINE L2 3116 3270 -2 1462 173 41 114 chr4 42502676 42503070 -141785592 - MLT1A1 LTR MaLR 0 365 1 357 313 43 17 chr4 42503659 42503774 -141784888 + MIR SINE MIR 8 125 -137 1672 243 51 26 chr4 42503778 42504271 -141784391 - MLT1D LTR MaLR 0 505 1 29 47 0 0 chr4 42504286 42504329 -141784333 + AT_rich Low_complexity Low_complexity 1 43 0 652 254 48 45 chr4 42504402 42504693 -141783969 - LTR16C LTR ERVL -15 476 185 182 196 36 36 chr4 42504889 42504945 -141783717 + MIR SINE MIR 134 189 -73 233 308 31 0 chr4 42505031 42505096 -141783566 + L2 LINE L2 3201 3267 -5 333 208 0 0 chr4 42505107 42505184 -141783478 + (TGGA)n Simple_repeat Simple_repeat 4 80 0 2083 121 4 0 chr4 42505445 42505761 -141782901 - AluSq SINE Alu 0 319 3 398 238 25 0 chr4 42506717 42506797 -141781865 - L2 LINE L2 0 3313 3232 453 328 22 18 chr4 42506934 42507163 -141781499 - L2 LINE L2 -337 2977 2748 786 282 50 38 chr4 42507298 42507560 -141781102 - MLT1J LTR MaLR -246 265 1 297 350 39 0 chr4 42507613 42507716 -141780946 - L2 LINE L2 -18 3254 3148 557 253 47 7 chr4 42507717 42507867 -141780795 + MER5B DNA MER1_type 2 157 -21 281 304 40 64 chr4 42508001 42508126 -141780536 - L2 LINE L2 -219 3053 2932 471 268 151 6 chr4 42510462 42510641 -141778021 + MIR SINE MIR 48 252 -10 21 36 0 0 chr4 42511154 42511182 -141777480 + AT_rich Low_complexity Low_complexity 1 28 0 2206 117 7 0 chr4 42512595 42512894 -141775768 + AluSx SINE Alu 1 301 -11 787 267 122 63 chr4 42513856 42514332 -141774330 - MLT1J LTR MaLR -7 504 1 1118 187 47 0 chr4 42514497 42514711 -141773951 - MIR SINE MIR -3 259 36 190 258 59 86 chr4 42515158 42515344 -141773318 + L2 LINE L2 2851 3031 -241 1172 235 231 20 chr4 42515614 42516104 -141772558 + LTR50 LTR ERVL 43 635 -160 8906 105 8 40 chr4 42516113 42517092 -141771570 - HSMAR2 DNA Mariner -1 1301 293 2200 109 0 0 chr4 42517092 42517385 -141771277 + AluSg SINE Alu 1 293 -17 2330 101 0 3 chr4 42517394 42517700 -141770962 + AluSp SINE Alu 1 305 -8 8906 105 8 40 chr4 42517700 42518052 -141770610 - HSMAR2 DNA Mariner -1017 285 2 396 189 24 0 chr4 42518085 42518174 -141770488 + LTR50 LTR ERVL 434 795 0 337 340 49 28 chr4 42518175 42518319 -141770343 + L2 LINE L2 2657 2803 -511 1397 275 31 21 chr4 42518362 42518787 -141769875 + LTR16A LTR ERVL 16 444 -6 1338 269 49 39 chr4 42518794 42518930 -141769732 + HERV16 LTR ERVL 2 135 -4861 1557 131 8 13 chr4 42518930 42519167 -141769495 - MER46A DNA MER2_type 0 236 1 1338 269 49 39 chr4 42519167 42519520 -141769142 + HERV16 LTR ERVL 135 496 -4500 321 316 0 10 chr4 42569887 42569985 -141718677 - MIR3 SINE MIR -11 197 101 2254 65 44 0 chr4 42570134 42570427 -141718235 + AluY SINE Alu 1 306 -5 716 143 102 34 chr4 42570518 42570665 -141717997 + AluJb SINE Alu 1 157 -155 432 141 0 0 chr4 42572271 42572335 -141716327 + AluJ/FLAM SINE Alu 1 64 -248 198 71 0 0 chr4 42575423 42575451 -141713211 + (TA)n Simple_repeat Simple_repeat 1 28 0 22 0 0 0 chr4 42575696 42575718 -141712944 + AT_rich Low_complexity Low_complexity 1 22 0 848 161 0 0 chr4 42576451 42576569 -141712093 - FLAM_C SINE Alu -11 122 5 426 20 0 0 chr4 42576955 42577006 -141711656 + (TG)n Simple_repeat Simple_repeat 2 52 0 204 317 25 92 chr4 42577842 42577962 -141710700 - MIR SINE MIR -80 182 71 23 0 0 0 chr4 42580590 42580613 -141708049 + GC_rich Low_complexity Low_complexity 1 23 0 495 214 54 18 chr4 42581072 42581184 -141707478 - MIR SINE MIR -130 132 17 1074 144 0 0 chr4 42581942 42582122 -141706540 + (TA)n Simple_repeat Simple_repeat 1 180 0 301 333 0 0 chr4 42582123 42582213 -141706449 + L1MC4 LINE L1 6614 6703 -1339 * 343 238 71 0 chr4 42582157 42582241 -141706421 - L1MC4 LINE L1 -1339 6703 6614 217 200 0 0 chr4 42582241 42582276 -141706386 + (CA)n Simple_repeat Simple_repeat 2 36 0 914 167 155 0 chr4 42582386 42582625 -141706037 - MER63 DNA MER1_type -606 324 49 1213 208 108 46 chr4 42582639 42582990 -141705672 + MLT1B LTR MaLR 2 374 -16 5411 114 47 91 chr4 42583595 42584561 -141704101 - MER49 LTR ERV1 0 923 1 3028 118 197 6 chr4 42584873 42585405 -141703257 + MER51A LTR ERV1 1 634 0 354 309 114 30 chr4 42585411 42585673 -141702989 + L2 LINE L2 2989 3272 0 1636 150 4 11 chr4 42587106 42587411 -141701251 + AluJo SINE Alu 6 308 0 313 185 109 101 chr4 42587418 42587537 -141701125 + FLAM_A SINE Alu 1 120 -13 321 259 23 61 chr4 42587538 42587669 -141700993 - L1MC4 LINE L1 -389 7653 7528 733 238 32 0 chr4 42587701 42587886 -141700776 - L1MC4 LINE L1 -618 7424 7234 23 68 0 0 chr4 42588325 42588369 -141700293 + AT_rich Low_complexity Low_complexity 1 44 0 635 180 218 9 chr4 42588376 42588587 -141700075 - MER112 DNA MER1_type 0 256 2 606 106 279 0 chr4 42590899 42591003 -141697659 - FLAM_C SINE Alu 0 133 1 1197 107 36 6 chr4 42591378 42591546 -141697116 + AluY SINE Alu 1 173 -138 280 146 21 0 chr4 42592316 42592364 -141696298 + L2 LINE L2 3220 3268 -4 336 294 128 28 chr4 42592775 42592955 -141695707 - MIR3 SINE MIR -8 200 3 2353 94 0 0 chr4 42594073 42594371 -141694291 + AluSq SINE Alu 1 298 -15 2310 124 0 6 chr4 42596519 42596833 -141691829 + AluSx SINE Alu 1 312 0 21 0 0 0 chr4 42597192 42597213 -141691449 + AT_rich Low_complexity Low_complexity 1 21 0 2328 81 0 3 chr4 42597784 42598079 -141690583 + AluSc SINE Alu 1 294 -15 313 272 111 28 chr4 42598679 42598896 -141689766 + L1MC4a LINE L1 5639 5873 -1935 2367 113 103 10 chr4 42599231 42599621 -141689041 + MSTA LTR MaLR 2 427 -1 4765 107 15 10 chr4 42599991 42600665 -141687997 + LTR8 LTR ERV1 1 677 -14 1363 181 77 3 chr4 42600716 42601015 -141687647 + MER33 DNA MER1_type 4 324 0 2401 60 0 7 chr4 42601158 42601456 -141687206 - AluSp SINE Alu -6 307 12 676 271 26 26 chr4 42601597 42601789 -141686873 + MLT1I LTR MaLR 98 289 -120 460 243 56 0 chr4 42601987 42602094 -141686568 + L2 LINE L2 3201 3313 0 368 198 32 71 chr4 42602100 42602226 -141686436 - MER69 DNA AcHobo 0 2526 2406 2291 120 0 0 chr4 42602226 42602526 -141686136 - AluSx SINE Alu -11 301 2 1857 150 0 14 chr4 42603075 42603388 -141685274 + AluJb SINE Alu 2 310 0 284 304 11 0 chr4 42603506 42603598 -141685064 + L2 LINE L2 3175 3267 -46 2058 148 0 19 chr4 42604116 42604434 -141684228 - AluJb SINE Alu 0 312 1 1055 195 37 78 chr4 42604922 42605336 -141683326 - MLT1C LTR MaLR 0 467 1 1705 170 3 16 chr4 42605412 42605718 -141682944 + AluJb SINE Alu 1 302 -10 1681 177 40 40 chr4 42605941 42606313 -141682349 + MLT1A2 LTR MaLR 1 372 -2 686 220 249 0 chr4 42606579 42606788 -141681874 - MIR SINE MIR 0 262 2 246 62 0 0 chr4 42606905 42606937 -141681725 + (TG)n Simple_repeat Simple_repeat 2 33 0 297 265 12 0 chr4 42607544 42607627 -141681035 + (TA)n Simple_repeat Simple_repeat 2 85 0 32209 105 12 70 chr4 42607680 42612663 -141675999 - L1PA7 LINE L1 -3 6151 878 18842 26 0 1 chr4 42612663 42615515 -141673147 + L1PA3 LINE L1 3302 6152 -3 32209 105 12 70 chr4 42615515 42616997 -141671665 - L1PA7 LINE L1 -5276 878 78 2100 134 7 0 chr4 42616997 42617303 -141671359 + AluSq SINE Alu 1 308 -5 32209 105 12 70 chr4 42617303 42617367 -141671295 - L1PA7 LINE L1 -6076 78 12 484 145 0 0 chr4 42617387 42617456 -141671206 - AluJ/FRAM SINE Alu -21 291 223 321 149 0 0 chr4 42617557 42617604 -141671058 - Alu SINE Alu -255 48 2 711 159 13 187 chr4 42617618 42617907 -141670755 - MER69 DNA AcHobo -130 2396 2164 1866 140 11 0 chr4 42617907 42618215 -141670447 - AluSx SINE Alu 0 311 1 711 159 13 187 chr4 42618215 42618239 -141670423 - MER69 DNA AcHobo -362 2164 2137 2148 129 0 0 chr4 42618252 42618539 -141670123 - AluSx SINE Alu -25 287 1 27 92 0 0 chr4 42618542 42618618 -141670044 + AT_rich Low_complexity Low_complexity 1 76 0 2174 118 0 0 chr4 42618618 42618906 -141669756 - AluSg SINE Alu -22 288 1 329 130 14 14 chr4 42619696 42619765 -141668897 - L1M4 LINE L1 -1081 5065 4997 4857 155 23 43 chr4 42619793 42620697 -141667965 + L1MB3 LINE L1 5073 5950 -233 2482 173 10 0 chr4 42620697 42621096 -141667566 + MER57A LTR ERV1 1 403 0 4857 155 23 43 chr4 42621096 42621326 -141667336 + L1MB3 LINE L1 5950 6183 0 1707 132 59 179 chr4 42621495 42621583 -141667079 - MER83 LTR ERV1 0 448 351 1506 95 0 11 chr4 42621583 42621773 -141666889 + AluSg/x SINE Alu 83 270 -40 1707 132 59 179 chr4 42621773 42622191 -141666471 - MER83 LTR ERV1 -97 351 3 2470 89 12 12 chr4 42622217 42622554 -141666108 + THE1C LTR MaLR 1 337 -38 6267 111 3 5 chr4 42622554 42623178 -141665484 + THE1C-int LTR MaLR 713 1337 -243 2519 168 75 21 chr4 42623178 42623661 -141665001 + LTR22 LTR ERVK 1 509 0 6267 111 3 5 chr4 42623661 42623905 -141664757 + THE1C-int LTR MaLR 1337 1580 0 2531 142 5 3 chr4 42623905 42624279 -141664383 + THE1C LTR MaLR 1 375 0 2153 162 27 0 chr4 42624280 42624608 -141664054 + MER1B DNA MER1_type 1 337 0 481 245 177 7 chr4 42624749 42624896 -141663766 + MIR SINE MIR 2 173 -89 905 243 0 5 chr4 42624896 42625085 -141663577 + LTR33 LTR ERVL 1 188 -333 864 194 6 0 chr4 42625085 42625245 -141663417 - FAM SINE Alu -7 42 1 2220 198 19 68 chr4 42625411 42625952 -141662710 + LTR9 LTR ERV1 99 612 0 2227 102 7 13 chr4 42626510 42626815 -141661847 + AluSg SINE Alu 1 303 -7 22 70 0 0 chr4 42627475 42627518 -141661144 + AT_rich Low_complexity Low_complexity 1 43 0 1143 168 11 112 chr4 42627519 42627621 -141661041 - LTR37A LTR ERV1 -49 377 266 1433 167 68 48 chr4 42627621 42627914 -141660748 - AluJo SINE Alu -9 303 5 1143 168 11 112 chr4 42627914 42628061 -141660601 - LTR37A LTR ERV1 -160 266 172 1908 192 28 90 chr4 42628061 42628280 -141660382 + MLT1D LTR MaLR 1 232 -273 1953 113 33 50 chr4 42628280 42628581 -141660081 + AluSx SINE Alu 1 296 -16 1908 192 28 90 chr4 42628581 42628897 -141659765 + MLT1D LTR MaLR 232 503 -2 1143 168 11 112 chr4 42628897 42629003 -141659659 - LTR37A LTR ERV1 -254 172 57 234 0 0 0 chr4 42629522 42629548 -141659114 + (T)n Simple_repeat Simple_repeat 1 26 0 915 151 0 37 chr4 42629615 42629872 -141658790 - MER50 LTR ERV1 -22 712 407 1462 128 8 44 chr4 42629873 42630122 -141658540 - MER50 LTR ERV1 -492 242 3 544 323 59 25 chr4 42630161 42630571 -141658091 + MLT1K LTR MaLR 141 588 0 2354 107 3 0 chr4 42630644 42630954 -141657708 + AluSp SINE Alu 1 311 -2 1484 140 92 12 chr4 42631881 42632131 -141656531 + MER51A LTR ERV1 1 270 -364 706 196 57 6 chr4 42632160 42632318 -141656344 + MLT1B LTR MaLR 8 173 -217 1551 126 108 71 chr4 42632338 42632663 -141655999 + MER51A LTR ERV1 298 634 0 369 208 101 84 chr4 42632710 42632781 -141655881 + L1ME LINE L1 5274 5342 -822 2032 134 0 3 chr4 42632781 42633072 -141655590 + AluSg SINE Alu 1 290 -20 369 208 101 84 chr4 42633072 42633178 -141655484 + L1ME LINE L1 5342 5454 -710 226 156 22 0 chr4 42634579 42634624 -141654038 + T-rich Low_complexity Low_complexity 3 48 0 303 19 38 38 chr4 42634881 42634934 -141653728 + (TTTC)n Simple_repeat Simple_repeat 2 54 0 225 0 0 0 chr4 42636775 42636800 -141651862 + (TTG)n Simple_repeat Simple_repeat 2 26 0 242 289 33 66 chr4 42640166 42640287 -141648375 - MIR SINE MIR -46 216 100 289 303 28 0 chr4 42640559 42640668 -141647994 - MIR3 SINE MIR -53 155 44 2013 92 53 4 chr4 42640937 42641218 -141647444 - AluSx SINE Alu -10 302 8 183 80 0 0 chr4 42641221 42641246 -141647416 + (A)n Simple_repeat Simple_repeat 1 25 0 236 226 69 78 chr4 42641490 42641592 -141647070 + L3 LINE CR1 1477 1577 0 290 123 18 0 chr4 42645189 42645246 -141643416 + CT-rich Low_complexity Low_complexity 2 59 0 202 100 75 0 chr4 42647527 42647567 -141641095 + A-rich Low_complexity Low_complexity 1 43 0 2258 105 10 0 chr4 42650276 42650580 -141638082 - AluSx SINE Alu -5 307 1 397 283 0 9 chr4 42650984 42651090 -141637572 - MER5B DNA MER1_type -73 105 1 305 313 60 27 chr4 42651281 42651431 -141637231 + MIR SINE MIR 45 199 -63 323 283 9 26 chr4 42651441 42651554 -141637108 - MIR SINE MIR 0 262 152 416 251 179 17 chr4 42652923 42653102 -141635560 - MIR SINE MIR -48 214 7 2185 154 36 71 chr4 42653661 42654109 -141634553 + MSTB1 LTR MaLR 1 432 0 295 351 34 27 chr4 42656095 42656243 -141632419 - MER5A DNA MER1_type -2 187 39 1903 142 0 0 chr4 42656255 42656529 -141632133 - AluJb SINE Alu -38 274 1 576 212 28 6 chr4 42656974 42657094 -141631568 + MER5A DNA MER1_type 7 113 -65 1526 168 42 28 chr4 42657590 42657876 -141630786 + AluJo SINE Alu 1 290 -22 259 246 304 23 chr4 42657900 42658071 -141630591 - MIR SINE MIR -33 229 11 243 282 168 2 chr4 42660936 42661034 -141627628 + MIR SINE MIR 38 149 -102 459 251 134 21 chr4 42661749 42661936 -141626726 - MER3 DNA MER1_type 0 209 2 221 253 32 32 chr4 42663192 42663287 -141625375 - L2 LINE L2 -448 2866 2772 26 0 0 0 chr4 42663474 42663500 -141625162 + AT_rich Low_complexity Low_complexity 1 26 0 33 0 0 0 chr4 42663586 42663619 -141625043 + AT_rich Low_complexity Low_complexity 1 33 0 955 152 26 0 chr4 42663809 42663960 -141624702 - Tigger1 DNA MER2_type -1 2417 2263 3249 164 75 21 chr4 42663962 42664573 -141624089 - Tigger1 DNA MER2_type -1751 667 24 659 179 21 123 chr4 42666493 42666531 -141622131 - L1MD3 LINE L1 -30 7965 7925 2116 82 0 78 chr4 42666531 42666862 -141621800 - AluSc SINE Alu -4 305 1 659 179 21 123 chr4 42666862 42667058 -141621604 - L1MD3 LINE L1 -70 7925 7755 2124 90 21 0 chr4 42668567 42668869 -141619793 - AluSq SINE Alu 0 308 1 2264 107 0 28 chr4 42669262 42669579 -141619083 - AluSx SINE Alu -4 308 1 24 32 0 0 chr4 42670560 42670591 -141618071 + AT_rich Low_complexity Low_complexity 1 31 0 337 266 95 45 chr4 42671986 42672208 -141616454 - L1MC5 LINE L1 -51 7910 7678 22 35 0 0 chr4 42672743 42672772 -141615890 + AT_rich Low_complexity Low_complexity 1 29 0 810 146 15 31 chr4 42673266 42673396 -141615266 + FLAM_A SINE Alu 6 133 -9 2818 10 0 0 chr4 42674033 42674338 -141614324 + AluYa5 SINE Alu 1 305 -6 2330 86 23 0 chr4 42674569 42674871 -141613791 - AluSc SINE Alu 0 309 1 28 29 0 0 chr4 42675265 42675300 -141613362 + AT_rich Low_complexity Low_complexity 1 35 0 451 66 0 0 chr4 42675465 42675526 -141613136 - AluSc SINE Alu -10 299 239 1159 82 0 0 chr4 42675526 42675672 -141612990 - AluY SINE Alu -165 146 1 199 261 3 0 chr4 42676022 42676078 -141612584 + MIR SINE MIR 93 148 -62 546 82 35 0 chr4 42676343 42676428 -141612234 - L1PB1 LINE L1 0 6151 6064 5218 115 65 29 chr4 42676776 42677429 -141611233 + Tigger3b DNA MER2_type 1 733 -2295 1537 183 11 21 chr4 42677429 42677713 -141610949 + AluJo SINE Alu 1 281 -31 5218 115 65 29 chr4 42677713 42678230 -141610432 + Tigger3b DNA MER2_type 733 1230 -1 333 214 176 23 chr4 42678293 42678424 -141610238 + MIR SINE MIR 111 261 -1 841 108 0 64 chr4 42678439 42678596 -141610066 + THE1C LTR MaLR 1 147 -228 323 137 0 0 chr4 42678594 42678645 -141610017 + MSTA LTR MaLR 378 428 0 * 10341 102 30 33 chr4 42678645 42680230 -141608432 + THE1C-int LTR MaLR 1 1580 0 2337 110 62 6 chr4 42680230 42680585 -141608077 + THE1C LTR MaLR 1 375 0 316 213 38 0 chr4 42680863 42680943 -141607719 + MIR SINE MIR 72 154 -108 1682 161 3 24 chr4 42681090 42681388 -141607274 + AluJb SINE Alu 13 304 -8 432 0 0 0 chr4 42681673 42681721 -141606941 + (TG)n Simple_repeat Simple_repeat 1 48 0 1108 130 105 82 chr4 42681725 42682040 -141606622 - MER33 DNA MER1_type -1 323 2 970 199 4 67 chr4 42682329 42682602 -141606060 - MLT1B LTR MaLR 0 467 135 1987 134 23 23 chr4 42682617 42682967 -141605695 + THE1B LTR MaLR 15 364 0 11815 83 10 2 chr4 42682967 42684536 -141604126 + THE1B-int LTR MaLR 1 1580 0 2212 112 30 33 chr4 42684536 42684901 -141603761 + THE1B LTR MaLR 1 364 0 532 227 34 0 chr4 42684903 42685022 -141603640 - MLT1B LTR MaLR -251 123 1 1258 254 95 58 chr4 42685476 42685537 -141603125 + L2 LINE L2 2487 2544 -769 617 225 8 0 chr4 42685537 42685657 -141603005 + FLAM_A SINE Alu 2 122 -11 194 0 39 0 chr4 42685660 42685686 -141602976 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1258 254 95 58 chr4 42685686 42686411 -141602251 + L2 LINE L2 2545 3306 -7 466 310 170 31 chr4 42686416 42686864 -141601798 - LTR67 LTR ERVL -29 528 19 215 227 0 0 chr4 42687380 42687424 -141601238 + T-rich Low_complexity Low_complexity 3 46 0 786 155 174 0 chr4 42688655 42688816 -141599846 - MER20 DNA MER1_type -30 189 1 1891 79 0 56 chr4 42689148 42689209 -141599453 + L1MA1 LINE L1 6017 6080 -222 2115 129 0 0 chr4 42689209 42689519 -141599143 + AluSg SINE Alu 1 310 0 1891 79 0 56 chr4 42689519 42689760 -141598902 + L1MA1 LINE L1 6080 6302 0 228 318 47 65 chr4 42689936 42690043 -141598619 - L2 LINE L2 -35 3237 3133 804 130 45 162 chr4 42690924 42691125 -141597537 - AluJb SINE Alu -3 309 141 2205 103 0 3 chr4 42691125 42691436 -141597226 - AluY SINE Alu 0 311 2 804 130 45 162 chr4 42691436 42691481 -141597181 - AluJb SINE Alu -171 141 92 2079 77 4 7 chr4 42691784 42692057 -141596605 + AluY SINE Alu 36 307 -4 1542 188 31 0 chr4 42692061 42692353 -141596309 + AluJo SINE Alu 1 301 -11 22 0 0 0 chr4 42694061 42694083 -141594579 + AT_rich Low_complexity Low_complexity 1 22 0 648 250 117 64 chr4 42694641 42695061 -141593601 + L1ME3 LINE L1 5713 6154 -8 391 291 42 36 chr4 42695075 42695240 -141593422 - L2 LINE L2 -680 2634 2469 726 33 0 0 chr4 42695247 42695337 -141593325 - AluY SINE Alu -9 302 213 329 276 207 5 chr4 42695352 42695569 -141593093 - L2 LINE L2 -865 2449 2189 1703 209 121 48 chr4 42696037 42696706 -141591956 + L1ME3A LINE L1 5292 6009 -161 2055 183 66 5 chr4 42696733 42697155 -141591507 - LTR32 LTR ERVL 0 471 24 274 198 115 0 chr4 42697167 42697263 -141591399 + L1ME3A LINE L1 6062 6168 -2 263 300 11 22 chr4 42697833 42697923 -141590739 + MIR SINE MIR 28 116 -92 629 164 90 16 chr4 42698125 42698247 -141590415 - AluJb SINE Alu -181 131 1 1369 188 0 0 chr4 42698255 42698479 -141590183 - AluSg/x SINE Alu -4 308 85 216 329 13 0 chr4 42699263 42699339 -141589323 + L2 LINE L2 3158 3234 -79 653 248 143 23 chr4 42700453 42700719 -141587943 - L2 LINE L2 -40 3273 2976 686 162 34 0 chr4 42702451 42702568 -141586094 + FLAM_A SINE Alu 1 121 -12 1698 145 28 47 chr4 42702865 42703183 -141585479 + AluJb SINE Alu 1 312 0 21 0 0 0 chr4 42703492 42703513 -141585149 + AT_rich Low_complexity Low_complexity 1 21 0 816 149 71 160 chr4 42703857 42704207 -141584455 - MER33 DNA MER1_type -5 319 1 430 264 143 66 chr4 42704209 42704688 -141583974 + L1ME4a LINE L1 5250 5833 -288 2384 87 7 0 chr4 42704688 42704987 -141583675 + AluSq SINE Alu 1 301 -12 430 264 143 66 chr4 42704987 42705084 -141583578 + L1ME4a LINE L1 5833 5921 -200 812 106 0 0 chr4 42705503 42705607 -141583055 + AluSq SINE Alu 82 185 -128 1023 173 15 30 chr4 42705707 42705904 -141582758 + AluJb SINE Alu 96 289 -23 2186 119 0 0 chr4 42705911 42706235 -141582427 + AluSx SINE Alu 5 312 0 506 214 174 15 chr4 42706692 42706893 -141581769 - L1ME4a LINE L1 -199 5922 5690 2075 129 3 7 chr4 42707615 42707917 -141580745 - AluSg SINE Alu -8 302 2 2409 221 67 66 chr4 42708133 42709257 -141579405 + L1MC5 LINE L1 6805 7929 -32 32 26 0 0 chr4 42710558 42710597 -141578065 + AT_rich Low_complexity Low_complexity 1 39 0 550 263 158 43 chr4 42710963 42711434 -141577228 - L1MEd LINE L1 -2535 3680 3264 3969 117 46 9 chr4 42711434 42712084 -141576578 - L1PA16 LINE L1 -10 6156 5483 550 263 158 43 chr4 42712084 42712720 -141575942 - L1MEd LINE L1 -2951 3264 2446 270 264 64 0 chr4 42712791 42712916 -141575746 - L1MEd LINE L1 -4094 2302 2170 919 273 74 68 chr4 42713279 42713804 -141574858 - L1MEd LINE L1 -953 1623 1102 1895 157 30 7 chr4 42713804 42714109 -141574553 - AluJo SINE Alu 0 312 1 919 273 74 68 chr4 42714109 42714578 -141574084 - L1MEd LINE L1 -1474 1102 526 212 283 0 61 chr4 42714971 42715070 -141573592 - L2 LINE L2 0 3313 3221 2082 144 9 6 chr4 42715083 42715424 -141573238 - MER2 DNA MER2_type 0 344 3 2092 147 3 0 chr4 42715562 42715861 -141572801 + AluJb SINE Alu 1 300 -12 2214 87 0 20 chr4 42716626 42716924 -141571738 + AluY SINE Alu 1 292 -19 882 310 65 59 chr4 42716928 42717589 -141571073 + L2 LINE L2 2557 3227 -86 366 253 158 37 chr4 42717636 42717877 -141570785 - L2 LINE L2 -1052 2262 1993 25 31 0 0 chr4 42719170 42719202 -141569460 + AT_rich Low_complexity Low_complexity 1 32 0 1791 155 7 14 chr4 42719350 42719662 -141569000 + AluJb SINE Alu 1 310 0 1726 149 94 23 chr4 42720234 42720584 -141568078 - THE1C LTR MaLR 0 375 1 231 231 83 19 chr4 42721182 42721290 -141567372 + L1MEd LINE L1 1143 1257 -4862 1649 96 73 0 chr4 42721629 42721890 -141566772 - L1MA1 LINE L1 -4 6298 6019 1697 185 11 3 chr4 42722158 42722445 -141566217 + AluJo SINE Alu 3 291 -21 2856 149 27 37 chr4 42722563 42723550 -141565112 + L1MA3 LINE L1 4688 5662 -643 1322 77 0 12 chr4 42723550 42723719 -141564943 + AluSc SINE Alu 119 285 -24 4060 108 25 6 chr4 42723719 42724360 -141564302 + L1MA3 LINE L1 5652 6304 -1 23 54 0 0 chr4 42724387 42724424 -141564238 + AT_rich Low_complexity Low_complexity 1 37 0 349 281 91 8 chr4 42725076 42725197 -141563465 + MIR SINE MIR 2 132 -130 642 216 66 12 chr4 42725207 42725374 -141563288 + MIR SINE MIR 76 251 -11 350 269 52 22 chr4 42725652 42725786 -141562876 - L1ME3A LINE L1 -219 5951 5814 454 252 61 0 chr4 42725787 42725902 -141562760 + MIR SINE MIR 141 262 0 315 0 0 0 chr4 42725953 42725988 -141562674 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 880 261 90 42 chr4 42725989 42726468 -141562194 - L1ME3A LINE L1 -399 5763 5259 4407 164 26 26 chr4 42726811 42728047 -141560615 - L1P3 LINE L1 -4757 1389 193 722 284 63 35 chr4 42730383 42730777 -141557885 + L1ME3A LINE L1 5359 5763 -399 222 37 0 0 chr4 42730778 42730805 -141557857 + (TAGA)n Simple_repeat Simple_repeat 2 28 0 457 252 61 0 chr4 42730856 42730971 -141557691 - MIR SINE MIR 0 262 141 338 276 52 22 chr4 42730972 42731106 -141557556 + L1ME3A LINE L1 5814 5951 -219 627 222 66 12 chr4 42731384 42731551 -141557111 - MIR SINE MIR -11 251 76 259 273 91 36 chr4 42731564 42731674 -141556988 - MIR SINE MIR -133 129 14 2001 138 3 6 chr4 42732314 42732625 -141556037 - AluJb SINE Alu -2 310 1 1729 104 112 22 chr4 42732635 42732904 -141555758 - AluSg SINE Alu -11 299 7 2070 151 21 44 chr4 42734067 42734381 -141554281 + MER6 DNA MER2_type 443 746 -119 2299 87 3 7 chr4 42734381 42734681 -141553981 - AluSp SINE Alu -14 299 1 2070 151 21 44 chr4 42734681 42734796 -141553866 + MER6 DNA MER2_type 746 862 -3 23 0 0 0 chr4 42735454 42735477 -141553185 + AT_rich Low_complexity Low_complexity 1 23 0 288 148 114 23 chr4 42735731 42735819 -141552843 - L1M4 LINE L1 -3482 2664 2569 1785 84 0 30 chr4 42735820 42736057 -141552605 - AluSq SINE Alu -13 300 71 690 61 79 61 chr4 42736057 42736171 -141552491 - AluSq/x SINE Alu -197 116 1 339 264 47 8 chr4 42736175 42736304 -141552358 - L1M4 LINE L1 -3574 2572 2439 683 211 26 31 chr4 42736459 42736641 -141552021 - MLT1E LTR MaLR 0 593 386 32 26 0 0 chr4 42738591 42738630 -141550032 + AT_rich Low_complexity Low_complexity 1 39 0 737 290 102 11 chr4 42739924 42740296 -141548366 - L1M4 LINE L1 -1997 4149 3744 473 317 0 19 chr4 42740889 42741050 -141547612 + MIR SINE MIR 15 172 -90 207 171 0 0 chr4 42741105 42741140 -141547522 + (CAT)n Simple_repeat Simple_repeat 1 35 0 33 0 0 0 chr4 42741175 42741208 -141547454 + AT_rich Low_complexity Low_complexity 1 33 0 385 140 70 53 chr4 42741826 42741940 -141546722 + MER112 DNA MER1_type 2 117 -143 1754 109 8 23 chr4 42742032 42742311 -141546351 - AluSx SINE Alu 0 313 39 185 359 39 13 chr4 42743539 42743617 -141545045 - MIR SINE MIR -103 105 26 676 267 3 41 chr4 42744019 42744311 -141544351 - AluJb SINE Alu -30 282 2 1514 178 4 4 chr4 42745106 42745370 -141543292 - AluSx SINE Alu -47 265 2 23 0 0 0 chr4 42746849 42746872 -141541790 + AT_rich Low_complexity Low_complexity 1 23 0 970 169 23 23 chr4 42747286 42747458 -141541204 + FAM SINE Alu 3 174 -1 1034 245 105 24 chr4 42747524 42747989 -141540673 - L1M4 LINE L1 -2448 3698 3196 1697 97 0 0 chr4 42748391 42748607 -141540055 + AluSg/x SINE Alu 70 285 -24 700 291 82 44 chr4 42748755 42749038 -141539624 + L1ME3A LINE L1 5427 5739 -431 2500 65 0 3 chr4 42749038 42749347 -141539315 - AluSc SINE Alu -1 308 1 700 291 82 44 chr4 42749347 42749565 -141539097 + L1ME3A LINE L1 5739 5947 -223 640 265 178 22 chr4 42750317 42750672 -141537990 - MLT1E LTR MaLR -113 429 20 336 287 33 47 chr4 42751295 42751445 -141537217 + MIR3 SINE MIR 3 150 -58 277 237 61 53 chr4 42751467 42751581 -141537081 - MIR SINE MIR -12 250 136 288 0 0 0 chr4 42751776 42751808 -141536854 + (TA)n Simple_repeat Simple_repeat 2 33 0 1060 194 0 71 chr4 42751812 42752122 -141536540 - AluSx SINE Alu -6 306 19 1242 146 25 5 chr4 42754369 42754568 -141534094 + MER3 DNA MER1_type 2 204 -5 2375 81 0 7 chr4 42754819 42755116 -141533546 + AluSp SINE Alu 1 295 -18 2221 104 10 0 chr4 42755117 42755414 -141533248 + AluSp SINE Alu 2 301 -12 1009 94 0 0 chr4 42756750 42756877 -141531785 + AluSq SINE Alu 82 208 -105 2220 91 0 7 chr4 42757038 42757323 -141531339 + AluSq SINE Alu 1 283 -30 193 277 0 0 chr4 42757407 42757454 -141531208 + MIR SINE MIR 134 180 -82 399 264 15 94 chr4 42757559 42757760 -141530902 - L2 LINE L2 -197 3116 2932 1920 153 0 0 chr4 42757785 42758072 -141530590 - AluJb SINE Alu -25 287 1 693 136 8 0 chr4 42758150 42758268 -141530394 - AluSp/q SINE Alu -4 309 191 528 253 6 99 chr4 42758418 42758580 -141530082 - MIR SINE MIR -109 153 7 277 215 100 100 chr4 42758878 42759008 -141529654 - L2 LINE L2 -4 3309 3180 2487 72 0 3 chr4 42759107 42759414 -141529248 + AluSc SINE Alu 1 306 -3 431 261 152 9 chr4 42759516 42759746 -141528916 + HAL1 LINE L1 2241 2503 -4 2323 104 0 0 chr4 42761015 42761314 -141527348 - AluSx SINE Alu -13 299 1 2378 77 0 13 chr4 42761631 42761943 -141526719 - AluY SINE Alu -3 308 1 495 200 27 0 chr4 42762228 42762338 -141526324 - MSTA LTR MaLR -315 113 1 716 201 37 0 chr4 42762338 42762472 -141526190 + FRAM SINE Alu 18 156 -20 288 180 20 0 chr4 42762779 42762829 -141525833 + Tigger5 DNA MER2_type 2273 2323 0 2030 112 27 0 chr4 42762946 42763240 -141525422 - AluSp SINE Alu -6 307 6 2413 35 48 0 chr4 42764149 42764438 -141524224 - AluY SINE Alu -8 303 1 1546 64 0 0 chr4 42765065 42765253 -141523409 + AluY SINE Alu 1 188 -123 1839 164 35 24 chr4 42767416 42767787 -141520875 - THE1C LTR MaLR 0 375 1 230 395 0 0 chr4 42767824 42767910 -141520752 - L2 LINE L2 0 3272 3187 266 179 0 0 chr4 42767917 42767956 -141520706 + AluSp SINE Alu 136 174 -129 648 73 0 0 chr4 42767957 42768039 -141520623 + FLAM_A SINE Alu 20 101 -41 526 310 56 29 chr4 42768058 42768565 -141520097 - L1MC4a LINE L1 -375 5746 5355 785 232 36 23 chr4 42768727 42768947 -141519715 - L1MC5 LINE L1 -36 7925 7703 2185 97 41 0 chr4 42769374 42769664 -141518998 - AluY SINE Alu -8 303 2 1119 173 0 0 chr4 42769673 42769841 -141518821 - FAM SINE Alu -7 168 1 7701 182 65 26 chr4 42770802 42771823 -141516839 + Cheshire DNA MER1_type 4 1119 -1301 2123 106 0 11 chr4 42771823 42772129 -141516533 - AluSc SINE Alu 0 303 1 7701 182 65 26 chr4 42772129 42772787 -141515875 + Cheshire DNA MER1_type 1119 1750 -670 3058 160 50 27 chr4 42774997 42775602 -141513060 + Cheshire DNA MER1_type 1766 2388 -32 2435 122 62 8 chr4 42775602 42776004 -141512658 - MSTA LTR MaLR -4 424 1 3058 160 50 27 chr4 42776004 42776035 -141512627 + Cheshire DNA MER1_type 2388 2417 -3 683 267 52 0 chr4 42776417 42776608 -141512054 - L1MC4 LINE L1 -1046 6996 6796 305 305 130 49 chr4 42776697 42777005 -141511657 - L1MC4a LINE L1 -1426 6382 6050 769 148 7 15 chr4 42777069 42777204 -141511458 + AluJo SINE Alu 1 134 -178 23 0 0 0 chr4 42777204 42777227 -141511435 + AT_rich Low_complexity Low_complexity 1 23 0 484 228 137 43 chr4 42777268 42777296 -141511366 - L1MC4a LINE L1 -1896 5912 5888 2286 93 0 0 chr4 42777296 42777586 -141511076 - AluY SINE Alu -21 290 1 484 228 137 43 chr4 42777586 42777768 -141510894 - L1MC4a LINE L1 -1920 5888 5682 4975 137 14 22 chr4 42777945 42778815 -141509847 - L1MB2 LINE L1 -2 6169 5307 1233 109 12 0 chr4 42778982 42779147 -141509515 - AluSq SINE Alu -146 167 1 879 281 95 61 chr4 42779274 42779716 -141508946 + L2 LINE L2 1050 1506 -1808 362 266 31 23 chr4 42779751 42779879 -141508783 + L2 LINE L2 1803 1931 -1383 258 32 0 0 chr4 42780597 42780628 -141508034 + (T)n Simple_repeat Simple_repeat 1 31 0 189 0 0 0 chr4 42781139 42781160 -141507502 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1652 137 0 4 chr4 42781184 42781425 -141507237 - AluSq SINE Alu -73 240 1 2298 99 0 0 chr4 42782820 42783113 -141505549 - AluSc SINE Alu -16 293 1 287 250 106 50 chr4 42783441 42783601 -141505061 - L2 LINE L2 -847 2467 2299 613 269 49 66 chr4 42783729 42783915 -141504747 - L2 LINE L2 -1028 2286 2098 2053 65 34 4 chr4 42783915 42784177 -141504485 + AluY SINE Alu 37 306 -5 613 269 49 66 chr4 42784177 42784247 -141504415 - L2 LINE L2 -1216 2098 2033 2191 121 25 25 chr4 42784247 42784611 -141504051 - THE1B LTR MaLR 0 364 1 613 269 49 66 chr4 42784611 42784639 -141504023 - L2 LINE L2 -1281 2033 2006 1169 75 0 7 chr4 42784642 42784789 -141503873 - AluSc SINE Alu -14 295 150 1512 175 45 38 chr4 42784808 42785099 -141503563 + AluJo SINE Alu 1 293 -19 29495 109 12 61 chr4 42785109 42791591 -141497071 + L1PA7 LINE L1 1 6154 0 186 206 0 0 chr4 42791798 42791832 -141496830 + MIR SINE MIR 121 154 -108 1751 185 3 13 chr4 42792304 42792618 -141496044 - AluJo SINE Alu -1 311 1 259 210 49 0 chr4 42793914 42793995 -141494667 + L1MC/D LINE L1 5813 5897 -1911 1779 303 92 22 chr4 42794006 42795119 -141493543 + L1MEc LINE L1 37 1227 -5169 577 255 50 66 chr4 42795122 42795424 -141493238 + L1M4 LINE L1 3546 3842 -2304 1785 245 67 46 chr4 42795430 42796415 -141492247 + L1M4 LINE L1 4296 5301 -845 2003 201 48 39 chr4 42796627 42797126 -141491536 + L1ME2 LINE L1 5176 5693 -469 2196 97 13 23 chr4 42797126 42797436 -141491226 + AluSq SINE Alu 1 307 -6 2003 201 48 39 chr4 42797436 42797605 -141491057 + L1ME2 LINE L1 5693 5859 -303 488 217 37 63 chr4 42797645 42797784 -141490878 + L1ME2 LINE L1 5971 6105 -59 2067 125 10 10 chr4 42797784 42798087 -141490575 + AluSx SINE Alu 1 303 -9 488 217 37 63 chr4 42798087 42798136 -141490526 + L1ME2 LINE L1 6105 6154 -10 563 181 56 105 chr4 42798152 42798205 -141490457 + L1MC5 LINE L1 7608 7662 -299 2455 65 0 36 chr4 42798205 42798513 -141490149 - AluY SINE Alu -14 297 1 563 181 56 105 chr4 42798513 42798725 -141489937 + L1MC5 LINE L1 7662 7860 -101 964 77 0 0 chr4 42798754 42798871 -141489791 + AluSq/x SINE Alu 1 117 -195 24 0 0 0 chr4 42798966 42798990 -141489672 + AT_rich Low_complexity Low_complexity 1 24 0 1505 103 0 0 chr4 42799092 42799310 -141489352 - AluY SINE Alu 0 307 90 195 162 0 0 chr4 42799926 42799963 -141488699 + (TA)n Simple_repeat Simple_repeat 1 37 0 2030 119 122 15 chr4 42799999 42800327 -141488335 - THE1B LTR MaLR 0 364 2 11160 93 6 37 chr4 42800330 42801536 -141487126 - THE1B-int LTR MaLR -2 1578 436 2470 84 0 0 chr4 42801536 42801834 -141486828 + AluSc SINE Alu 1 298 -11 11160 93 6 37 chr4 42801834 42802257 -141486405 - THE1B-int LTR MaLR -1144 436 1 2098 123 85 18 chr4 42802257 42802598 -141486064 - THE1B LTR MaLR 0 364 1 227 293 13 0 chr4 42803152 42803227 -141485435 + GA-rich Low_complexity Low_complexity 1 76 0 252 254 114 70 chr4 42803498 42803797 -141484865 - L1MC/D LINE L1 -1899 5909 5598 209 231 90 82 chr4 42805585 42805719 -141482943 + MIR SINE MIR 73 207 -55 1371 215 4 0 chr4 42805737 42806002 -141482660 + MER6 DNA MER2_type 5 270 -595 192 277 247 54 chr4 42806605 42806771 -141481891 - MIR SINE MIR -14 248 51 1295 179 52 25 chr4 42807364 42807533 -141481129 - Charlie1a DNA MER1_type -1322 1439 1276 2097 121 0 33 chr4 42807533 42807840 -141480822 - AluSx SINE Alu -15 297 1 2145 100 0 42 chr4 42807843 42808153 -141480509 - AluSg SINE Alu -13 297 1 1295 179 52 25 chr4 42808153 42808394 -141480268 - Charlie1a DNA MER1_type -1486 1275 982 1558 240 101 20 chr4 42808500 42809005 -141479657 - MER77 LTR ERV1 -6 599 54 1524 197 37 12 chr4 42809024 42809793 -141478869 - Charlie1a DNA MER1_type -546 909 6 2836 10 0 0 chr4 42811052 42811362 -141477300 + AluYa5 SINE Alu 1 310 -1 22 70 0 0 chr4 42812991 42813034 -141475628 + AT_rich Low_complexity Low_complexity 1 43 0 287 229 0 97 chr4 42813590 42813734 -141474928 + FLAM_C SINE Alu 1 130 -3 234 0 0 0 chr4 42814877 42814903 -141473759 + (A)n Simple_repeat Simple_repeat 1 26 0 448 263 54 59 chr4 42814970 42815001 -141473661 - MIR SINE MIR -29 233 203 2342 67 0 7 chr4 42815001 42815299 -141473363 - AluY SINE Alu -12 299 4 448 263 54 59 chr4 42815299 42815453 -141473209 - MIR SINE MIR -59 203 49 2374 76 3 3 chr4 42815677 42815978 -141472684 - AluSc SINE Alu -8 301 1 1980 118 11 0 chr4 42816026 42816342 -141472320 - AluSg SINE Alu 0 319 1 2318 86 3 0 chr4 42816512 42816802 -141471860 + AluSg SINE Alu 1 291 -19 1442 171 84 19 chr4 42816813 42817134 -141471528 + MER2 DNA MER2_type 2 343 -1 208 210 16 16 chr4 42817286 42817348 -141471314 + (TA)n Simple_repeat Simple_repeat 2 63 0 1000 141 62 5 chr4 42817476 42817668 -141470994 - MER3 DNA MER1_type -1 208 6 2484 74 0 0 chr4 42818191 42818502 -141470160 + AluY SINE Alu 1 311 0 24 77 0 0 chr4 42818534 42818586 -141470076 + AT_rich Low_complexity Low_complexity 1 52 0 1564 216 165 66 chr4 42819272 42819646 -141469016 + L2 LINE L2 1671 2129 -1185 2102 106 40 13 chr4 42819646 42819947 -141468715 - AluSx SINE Alu -3 309 1 1564 216 165 66 chr4 42819947 42820177 -141468485 + L2 LINE L2 2129 2335 -979 246 286 0 0 chr4 42820250 42820263 -141468399 + L1ME4a LINE L1 5578 5590 -531 558 214 30 30 chr4 42820263 42820394 -141468268 + FLAM_C SINE Alu 3 133 0 246 286 0 0 chr4 42820394 42820457 -141468205 + L1ME4a LINE L1 5589 5654 -467 1853 141 0 20 chr4 42820548 42820854 -141467808 + AluJb SINE Alu 1 300 -12 280 206 262 0 chr4 42821024 42821150 -141467512 + L1ME4a LINE L1 5957 6115 -6 2146 98 0 0 chr4 42821176 42821452 -141467210 + AluSx SINE Alu 1 276 -36 315 0 0 0 chr4 42821458 42821493 -141467169 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 204 173 96 58 chr4 42821904 42821956 -141466706 - L2 LINE L2 -3 3310 3257 5641 134 47 17 chr4 42822958 42824239 -141464423 - L1MA6 LINE L1 0 6300 4977 2371 159 103 0 chr4 42824239 42824703 -141463959 - MER44D DNA MER2_type 0 705 194 1318 168 150 18 chr4 42824703 42824881 -141463781 - MER44D DNA MER2_type -2243 344 191 5779 47 5 44 chr4 42824881 42825669 -141462993 + L1PA8 LINE L1 5414 6170 -2 1318 168 150 18 chr4 42825669 42825776 -141462886 - MER44D DNA MER2_type -2396 191 21 2415 94 7 0 chr4 42825778 42826086 -141462576 + AluSg SINE Alu 1 310 0 1250 99 136 14 chr4 42826127 42826348 -141462314 - L1MA6 LINE L1 -1168 4978 4731 526 275 82 38 chr4 42826419 42826786 -141461876 + MARNA DNA Mariner 197 579 -7 412 248 195 0 chr4 42827003 42827116 -141461546 + MER5A DNA MER1_type 52 186 -3 672 247 92 30 chr4 42827299 42827452 -141461210 + L1MEc LINE L1 1066 1208 -5188 1528 185 201 19 chr4 42827452 42827879 -141460783 - MLT1D LTR MaLR 0 505 1 672 247 92 30 chr4 42827879 42828061 -141460601 + L1MEc LINE L1 1208 1422 -4974 1822 177 7 0 chr4 42828300 42828582 -141460080 + AluJo SINE Alu 3 286 -26 21 0 0 0 chr4 42828764 42828785 -141459877 + AT_rich Low_complexity Low_complexity 1 21 0 1375 207 52 41 chr4 42828985 42829153 -141459509 - MER7A DNA MER2_type -2692 346 181 1219 93 111 46 chr4 42829153 42829287 -141459375 - MER30 DNA MER1_type 0 230 75 2140 75 61 7 chr4 42829287 42829582 -141459080 - AluY SINE Alu 0 311 1 1219 93 111 46 chr4 42829582 42829663 -141458999 - MER30 DNA MER1_type -155 75 1 1375 207 52 41 chr4 42829663 42829837 -141458825 - MER7A DNA MER2_type -2857 181 2 1643 169 10 29 chr4 42829849 42830163 -141458499 - AluJo SINE Alu -4 308 1 642 231 60 0 chr4 42830684 42830801 -141457861 - FLAM_C SINE Alu -18 125 2 242 256 44 22 chr4 42830918 42831008 -141457654 + L2 LINE L2 3222 3313 0 3472 208 132 9 chr4 42831104 42832577 -141456085 - L1MB7 LINE L1 -237 5947 4268 1889 153 0 19 chr4 42832577 42832890 -141455772 - AluJb SINE Alu -5 307 1 3472 208 132 9 chr4 42832890 42832921 -141455741 - L1MB7 LINE L1 -1916 4268 4242 1931 138 45 3 chr4 42833080 42833371 -141455291 + AluJb SINE Alu 3 305 -7 510 194 48 8 chr4 42835293 42835417 -141453245 + MIR SINE MIR 121 249 -13 252 287 28 19 chr4 42842102 42842210 -141446452 + MER5A DNA MER1_type 81 189 0 258 282 83 59 chr4 42844521 42844648 -141444014 + MIR SINE MIR 31 157 -51 408 262 48 8 chr4 42845412 42845538 -141443124 + L2 LINE L2 3181 3311 -2 184 184 41 20 chr4 42845559 42845608 -141443054 + L2 LINE L2 3223 3272 0 1911 132 18 4 chr4 42896626 42896906 -141391756 - AluSx SINE Alu -11 301 18 1358 170 25 0 chr4 42897467 42897702 -141390960 - MER58B DNA MER1_type 0 341 101 262 133 0 83 chr4 42897681 42897741 -141390921 - AluSc SINE Alu 0 299 245 * 471 159 46 113 chr4 42900182 42900377 -141388285 - L1MC4 LINE L1 -1 8041 7860 2133 93 0 35 chr4 42900425 42900714 -141387948 + AluSq SINE Alu 23 301 -12 2255 136 0 63 chr4 42900848 42901245 -141387417 + pTR5 LTR ERV1 1661 2032 -406 302 253 11 0 chr4 42901246 42901337 -141387325 + LTR30 LTR ERV1 552 643 -79 1317 114 87 14 chr4 42901337 42901556 -141387106 + LTR12 LTR ERV1 480 714 0 317 273 70 56 chr4 42901558 42901671 -141386991 + MER110A LTR ERV1 217 331 -137 2449 154 100 34 chr4 42901671 42902247 -141386415 + MER4B LTR ERV1 1 779 0 477 286 100 45 chr4 42902646 42903118 -141385544 + L2 LINE L2 1682 2179 -1135 575 150 35 9 chr4 42903130 42903243 -141385419 - MER33 DNA MER1_type -2 361 246 2842 131 63 4 chr4 42903313 42903766 -141384896 - LTR12 LTR ERV1 -133 581 31 1923 128 13 10 chr4 42904523 42904821 -141383841 - AluSx SINE Alu -8 304 6 240 307 11 11 chr4 42904833 42904921 -141383741 - MIR SINE MIR -12 250 163 2152 101 3 7 chr4 42905494 42905780 -141382882 - AluSg SINE Alu -25 285 1 936 140 6 11 chr4 42905788 42905967 -141382695 + CT-rich Low_complexity Low_complexity 3 180 0 1870 119 0 79 chr4 42905992 42906005 -141382657 - AluJo SINE Alu -15 297 285 895 113 0 13 chr4 42906005 42906155 -141382507 + (TTCC)n Simple_repeat Simple_repeat 3 150 0 1870 119 0 79 chr4 42906155 42906459 -141382203 - AluJo SINE Alu -27 285 5 608 240 16 0 chr4 42907124 42907253 -141381409 + MER58 DNA MER1_type 1 131 -210 972 103 0 0 chr4 42907254 42907380 -141381282 + AluSq/x SINE Alu 1 126 -187 1818 153 0 39 chr4 42907527 42907834 -141380828 + AluJb SINE Alu 9 303 -9 287 116 0 0 chr4 42907835 42907878 -141380784 + L1MC/D LINE L1 5422 5464 -702 383 190 21 21 chr4 42907896 42908135 -141380527 + GA-rich Low_complexity Low_complexity 1 239 0 268 122 24 0 chr4 42908264 42908305 -141380357 + L1MC/D LINE L1 5550 5591 -2404 2347 108 0 9 chr4 42908326 42908642 -141380020 + AluSq SINE Alu 1 313 0 298 339 96 0 chr4 42909408 42909523 -141379139 + L2 LINE L2 3147 3272 0 277 359 54 19 chr4 42909518 42909889 -141378773 - L2 LINE L2 -965 2349 1966 * 1537 184 18 0 chr4 42910575 42910852 -141377810 - AluSx SINE Alu -30 282 1 1253 198 44 76 chr4 42911912 42911996 -141376666 - L1ME3A LINE L1 -1 6169 6084 2447 73 0 16 chr4 42911996 42912312 -141376350 + AluY SINE Alu 1 311 0 1253 198 44 76 chr4 42912312 42912353 -141376309 - L1ME3A LINE L1 -86 6084 6043 2399 113 0 0 chr4 42912353 42912663 -141375999 + AluSx SINE Alu 1 310 -2 1253 198 44 76 chr4 42912663 42912919 -141375743 - L1ME3A LINE L1 -127 6043 5799 21 0 0 0 chr4 42913692 42913713 -141374949 + AT_rich Low_complexity Low_complexity 1 21 0 390 252 153 0 chr4 42915134 42915245 -141373417 - L2 LINE L2 -1 3271 3144 1598 94 14 0 chr4 42915423 42915635 -141373027 - AluSp SINE Alu -98 215 1 374 251 51 42 chr4 42915640 42915855 -141372807 - L1MEd LINE L1 -5244 875 659 249 333 0 19 chr4 42916384 42916492 -141372170 + L2 LINE L2 2696 2801 -513 3324 128 4 0 chr4 42916517 42917035 -141371627 + LOR1a LTR ERV1 1 497 0 1792 210 10 27 chr4 42918635 42919115 -141369547 + L1M4 LINE L1 4920 5391 -755 5361 95 24 62 chr4 42919239 42920174 -141368488 - BaEV-int LTR ERV1 -5478 1418 711 258 187 132 77 chr4 42920206 42920297 -141368365 - BaEV-int LTR ERV1 -5579 1070 975 1473 129 194 217 chr4 42920403 42921445 -141367217 + LTR12 LTR ERV1 1 579 -135 1898 102 4 19 chr4 42921579 42921845 -141366817 + AluSc SINE Alu 36 297 -12 806 239 117 4 chr4 42921849 42922079 -141366583 + MIR SINE MIR 2 257 -5 392 176 35 0 chr4 42922159 42922244 -141366418 + L1MA5A LINE L1 6205 6292 -5 2014 114 32 11 chr4 42922375 42922656 -141366006 + AluSx SINE Alu 1 287 -25 2049 143 10 0 chr4 42922962 42923263 -141365399 + AluJb SINE Alu 7 310 -2 730 160 29 28 chr4 42923292 42923584 -141365078 + GA-rich Low_complexity Low_complexity 1 292 0 327 307 71 8 chr4 42923938 42924065 -141364597 - MIR3 SINE MIR -54 154 20 369 280 24 8 chr4 42924120 42924227 -141364435 + MLT1D LTR MaLR 1 112 -393 1973 171 35 22 chr4 42924227 42924596 -141364066 - MLT1A2 LTR MaLR 0 374 1 369 280 24 8 chr4 42924596 42924613 -141364049 + MLT1D LTR MaLR 112 127 -378 1671 182 11 0 chr4 42924971 42925251 -141363411 - AluJb SINE Alu -21 291 9 568 244 55 6 chr4 42927075 42927239 -141361423 + MER104 DNA Tc2 1 172 -8 550 269 0 48 chr4 42927825 42928033 -141360629 - MIR SINE MIR -62 200 3 485 149 35 0 chr4 42928497 42928611 -141360051 + (TG)n Simple_repeat Simple_repeat 2 119 0 1292 179 9 0 chr4 42929288 42929512 -141359150 - MLT1D LTR MaLR -2 503 278 270 276 141 12 chr4 42930278 42930441 -141358221 - MIR SINE MIR -12 250 67 370 242 67 33 chr4 42930623 42930743 -141357919 - MIR SINE MIR -114 148 25 506 298 43 75 chr4 42932260 42932515 -141356147 - MIR SINE MIR -12 250 4 2226 53 27 30 chr4 42932637 42932936 -141355726 - AluY SINE Alu -11 300 3 2159 70 6 32 chr4 42932945 42933261 -141355401 - AluY SINE Alu 0 311 4 1528 177 14 24 chr4 42934297 42934591 -141354071 + AluJo SINE Alu 1 291 -21 281 295 74 34 chr4 42934593 42934742 -141353920 - L2 LINE L2 -16 3297 3143 956 149 0 0 chr4 42934846 42934994 -141353668 - pTR5 LTR ERV1 -939 1499 1352 370 225 99 0 chr4 42935205 42935316 -141353346 - pTR5 LTR ERV1 -1574 864 743 1481 156 0 0 chr4 42935326 42935557 -141353105 - AluJb SINE Alu -81 231 1 759 149 55 81 chr4 42935557 42935660 -141353002 - MER33 DNA MER1_type -2356 229 125 2013 84 18 3 chr4 42935660 42935946 -141352716 - AluSg SINE Alu -20 290 1 759 149 55 81 chr4 42935946 42936077 -141352585 - MER33 DNA MER1_type -2460 125 1 790 259 255 18 chr4 42936090 42936537 -141352125 + L2 LINE L2 2191 2743 -571 698 142 9 0 chr4 42936548 42936654 -141352008 + FLAM_A SINE Alu 1 107 -35 201 350 10 31 chr4 42936756 42936853 -141351809 + L2 LINE L2 2800 2894 -420 2381 78 3 0 chr4 42936860 42937168 -141351494 - AluSc SINE Alu 0 309 1 537 245 68 80 chr4 42937227 42937464 -141351198 + L2 LINE L2 3078 3311 -2 25 0 0 0 chr4 42937477 42937502 -141351160 + AT_rich Low_complexity Low_complexity 1 25 0 306 295 85 20 chr4 42938528 42938728 -141349934 + L2 LINE L2 2836 3048 -224 243 356 96 9 chr4 42938873 42938988 -141349674 + L2 LINE L2 3136 3260 -12 198 71 0 0 chr4 42938991 42939019 -141349643 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 996 144 12 0 chr4 42939464 42939631 -141349031 - L1MA5 LINE L1 -6 6294 6126 933 219 184 72 chr4 42940087 42940517 -141348145 - MLT1J LTR MaLR -7 504 27 215 189 0 0 chr4 42940536 42940573 -141348089 - MER5A DNA MER1_type -19 170 134 1017 123 0 43 chr4 42940573 42940735 -141347927 - Tigger7 DNA MER2_type 0 2487 2333 1679 129 16 55 chr4 42940838 42941148 -141347514 - pTR5 LTR ERV1 -932 1506 1209 253 346 0 0 chr4 42941150 42941231 -141347431 + G-rich Low_complexity Low_complexity 1 81 0 2085 184 17 28 chr4 42941233 42941694 -141346968 - pTR5 LTR ERV1 -1240 1198 743 1520 47 11 5 chr4 42941694 42941885 -141346777 + AluY SINE Alu 108 299 -12 1516 102 74 5 chr4 42941890 42942105 -141346557 - MER30 DNA MER1_type 0 230 1 419 290 6 56 chr4 42942105 42942267 -141346395 + MER5B DNA MER1_type 25 178 0 352 337 57 29 chr4 42942278 42942453 -141346209 - MER5A DNA MER1_type -3 186 7 1813 124 53 3 chr4 42942741 42943024 -141345638 - AluSx SINE Alu -15 297 1 2163 93 0 31 chr4 42943480 42943801 -141344861 - AluSx SINE Alu -1 311 1 582 211 16 8 chr4 42943899 42944027 -141344635 - L1MC1 LINE L1 -6 6327 6199 1527 175 26 72 chr4 42944027 42944376 -141344286 + MER41C LTR ERV1 9 341 -213 1526 197 37 53 chr4 42944369 42944744 -141343918 + MER41C LTR ERV1 186 554 0 * 4292 133 33 46 chr4 42944744 42945532 -141343130 - L1MC1 LINE L1 -123 6210 5433 806 158 105 57 chr4 42945635 42945844 -141342818 - Tigger7 DNA MER2_type -119 2372 2 507 272 40 0 chr4 42945844 42945969 -141342693 - MER5A DNA MER1_type -53 136 7 1795 155 0 20 chr4 42946003 42946334 -141342328 - AluSx SINE Alu 0 312 1 2142 82 0 4 chr4 42947529 42947839 -141340823 + AluSp SINE Alu 5 313 0 823 163 0 0 chr4 42947840 42947963 -141340699 - AluJo/FLAM SINE Alu -179 123 1 252 304 78 17 chr4 42948076 42948191 -141340471 - MIR3 SINE MIR -1 207 86 1722 131 7 52 chr4 42948232 42948538 -141340124 - AluJb SINE Alu -20 292 1 2222 67 0 67 chr4 42948646 42948974 -141339688 - AluY SINE Alu -5 306 1 205 344 21 32 chr4 42949004 42949097 -141339565 - L2 LINE L2 -31 3241 3150 1284 191 78 28 chr4 42949458 42949740 -141338922 - MLT1B LTR MaLR -2 388 93 187 89 0 67 chr4 42952757 42952802 -141335860 + (GAAA)n Simple_repeat Simple_repeat 3 44 0 2346 97 0 0 chr4 42952942 42953251 -141335411 - AluSx SINE Alu -3 309 1 1097 145 16 16 chr4 42953307 42953493 -141335169 + AluJb SINE Alu 1 186 -126 11730 58 11 2 chr4 42953593 42955016 -141333646 - HERV17 LTR ERV1 -4761 3865 2430 2778 71 0 0 chr4 42955001 42955337 -141333325 - HERV17 LTR ERV1 -6612 2014 1679 * 14311 67 31 7 chr4 42955334 42957154 -141331508 - HERV17 LTR ERV1 -6762 1864 1 1885 80 88 0 chr4 42957154 42957404 -141331258 - LTR17 LTR ERV1 0 780 509 2425 70 3 0 chr4 42957504 42957805 -141330857 - LTR17 LTR ERV1 -478 302 1 314 256 168 8 chr4 42957824 42957949 -141330713 + MER110 LTR ERV1 346 490 -1 4135 92 16 2 chr4 42957980 42958526 -141330136 + MER41A LTR ERV1 1 554 0 2326 84 0 7 chr4 42960158 42960466 -141328196 - AluSq SINE Alu -7 306 1 326 167 14 0 chr4 42960732 42960738 -141327924 + (TA)n Simple_repeat Simple_repeat 1 5 -68 2210 63 18 0 chr4 42960738 42961024 -141327638 + AluY SINE Alu 1 291 -20 326 167 14 0 chr4 42961024 42961089 -141327573 + (TA)n Simple_repeat Simple_repeat 5 73 0 241 326 130 0 chr4 42961121 42961213 -141327449 - L2 LINE L2 0 3313 3210 298 319 243 0 chr4 42961657 42961801 -141326861 + MER91A DNA MER1_type 1 179 -17 1930 131 13 3 chr4 42961959 42962257 -141326405 + AluJo SINE Alu 11 311 -1 2325 101 0 0 chr4 42962268 42962576 -141326086 + AluSp SINE Alu 1 308 -5 682 186 0 0 chr4 42962588 42962706 -141325956 + FLAM_C SINE Alu 2 119 -24 294 29 0 0 chr4 42962709 42962744 -141325918 + (TAA)n Simple_repeat Simple_repeat 2 36 0 250 298 0 0 chr4 42963260 42963317 -141325345 - MER113 DNA MER1_type? -7 514 458 28 48 0 0 chr4 42963349 42963391 -141325271 + AT_rich Low_complexity Low_complexity 1 42 0 1985 148 0 0 chr4 42963459 42963762 -141324900 - AluSx SINE Alu -9 303 1 240 260 167 0 chr4 42963782 42963878 -141324784 - MER113 DNA MER1_type? -399 122 11 207 226 0 19 chr4 42963986 42964039 -141324623 + GA-rich Low_complexity Low_complexity 1 52 0 1684 189 0 10 chr4 42964451 42964752 -141323910 + AluJo SINE Alu 1 298 -14 688 124 86 0 chr4 42964767 42964872 -141323790 - MER21B LTR ERV1 -161 702 589 723 188 12 12 chr4 42964872 42965118 -141323544 + CT-rich Low_complexity Low_complexity 1 246 0 1998 118 0 53 chr4 42965118 42965439 -141323223 - AluSg SINE Alu -4 306 3 593 213 14 21 chr4 42965441 42965581 -141323081 - MER21B LTR ERV1 -259 604 466 1842 143 272 57 chr4 42965581 42966229 -141322433 - LTR48 LTR ERV1 0 787 1 * 2234 209 13 26 chr4 42966229 42966692 -141321970 - MER21B LTR ERV1 -406 457 1 588 296 206 26 chr4 42967165 42967587 -141321075 - LTR33 LTR ERVL -4 517 20 475 125 0 14 chr4 42967704 42967776 -141320886 - MLT1B LTR MaLR -292 98 28 390 169 0 52 chr4 42967776 42967853 -141320809 - MLT1B LTR MaLR -317 73 1 2175 97 0 10 chr4 42967926 42968224 -141320438 + AluSq SINE Alu 1 295 -18 991 206 0 29 chr4 42968353 42968562 -141320100 + L1MB7 LINE L1 5626 5828 -356 7196 179 41 13 chr4 42968567 42969912 -141318750 - MER52A LTR ERV1 0 1755 374 602 186 18 54 chr4 42969910 42970077 -141318585 - MER52A LTR ERV1 -1594 161 1 * 1279 239 24 0 chr4 42970083 42970380 -141318282 + L1MB7 LINE L1 5869 6172 -12 343 302 19 88 chr4 42970647 42970862 -141317800 - MIR3 SINE MIR -6 202 3 320 216 16 80 chr4 42970865 42970990 -141317672 + MIR SINE MIR 103 219 -43 574 284 107 69 chr4 42971890 42972142 -141316520 - L1M4 LINE L1 -871 5275 5034 1582 156 33 29 chr4 42972142 42972449 -141316213 - AluJo SINE Alu -4 308 1 574 284 107 69 chr4 42972449 42973048 -141315614 - L1M4 LINE L1 -1112 5034 4392 282 313 12 12 chr4 42973644 42973727 -141314935 + L2 LINE L2 3001 3083 -189 2197 117 98 3 chr4 42973911 42974279 -141314383 + MER57A LTR ERV1 1 403 0 1117 185 118 85 chr4 42974302 42974692 -141313970 + MER57A LTR ERV1 1 403 0 1806 125 6 44 chr4 42974698 42975017 -141313645 - AluSx SINE Alu -5 307 1 826 218 103 16 chr4 42975025 42975268 -141313394 + MER110A LTR ERV1 27 290 -178 5746 77 1 6 chr4 42975268 42976007 -141312655 - LTR17 LTR ERV1 0 780 1 2211 83 10 3 chr4 42976007 42976297 -141312365 - HERV17 LTR ERV1 0 8626 8335 306 51 0 0 chr4 42976287 42976326 -141312336 - HERV17 LTR ERV1 -1078 7548 7510 * 16328 41 11 0 chr4 42976319 42978210 -141310452 - HERV17 LTR ERV1 -2607 6019 4108 212 259 86 0 chr4 42978369 42978427 -141310235 + L2 LINE L2 3250 3312 -1 595 0 13 13 chr4 42979292 42979368 -141309294 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 2080 113 0 3 chr4 42979371 42979672 -141308990 - AluY SINE Alu -11 300 1 223 111 0 44 chr4 42979672 42979717 -141308945 + (TCTA)n Simple_repeat Simple_repeat 1 43 0 4360 85 59 69 chr4 42979973 42980203 -141308459 - LTR12 LTR ERV1 0 688 457 2328 57 17 0 chr4 42980203 42980499 -141308163 + AluY SINE Alu 1 301 -10 4360 85 59 69 chr4 42980499 42980963 -141307699 - LTR12 LTR ERV1 -231 457 1 1229 138 177 53 chr4 42981584 42981867 -141306795 - MLT1D LTR MaLR -2 503 186 2603 112 10 8 chr4 42981867 42982251 -141306411 + LOR1a LTR ERV1 1 385 -112 1128 115 0 0 chr4 42982276 42982424 -141306238 + LOR1a LTR ERV1 350 497 0 1269 123 73 5 chr4 42982434 42982638 -141306024 - MLT1D LTR MaLR -287 218 1 605 274 193 25 chr4 42982726 42983291 -141305371 - L1ME3A LINE L1 -218 5935 5276 22 0 0 0 chr4 42983349 42983371 -141305291 + AT_rich Low_complexity Low_complexity 1 22 0 225 221 71 94 chr4 42983864 42983991 -141304671 - L1P LINE L1 -1133 5013 4890 500 294 52 72 chr4 42984041 42984143 -141304519 - L1ME3A LINE L1 -3393 2736 2633 1476 94 39 13 chr4 42984143 42984377 -141304285 - L1MA8 LINE L1 -5 6286 6047 500 294 52 72 chr4 42984377 42984910 -141303752 - L1ME3A LINE L1 -3496 2633 2114 1478 171 0 12 chr4 42984915 42985166 -141303496 - AluSx SINE Alu -64 248 1 739 277 29 55 chr4 42985425 42985693 -141302969 - L1MEd LINE L1 -4729 1581 1307 2405 98 0 0 chr4 42985693 42985999 -141302663 - AluSx SINE Alu -6 306 1 739 277 29 55 chr4 42985999 42986270 -141302392 - L1MEd LINE L1 -5003 1307 1016 2027 149 7 3 chr4 42986270 42986572 -141302090 + AluJb SINE Alu 1 303 -9 739 277 29 55 chr4 42986572 42986685 -141301977 - L1MEd LINE L1 -5294 1016 902 10319 100 6 66 chr4 42986785 42986867 -141301795 + Tigger1 DNA MER2_type 865 950 -1468 2352 92 20 0 chr4 42986867 42987172 -141301490 + AluSx SINE Alu 1 311 -1 10319 100 6 66 chr4 42987172 42987709 -141300953 + Tigger1 DNA MER2_type 950 1518 -900 2240 108 3 0 chr4 42987709 42988006 -141300656 + AluSg SINE Alu 1 298 -12 10319 100 6 66 chr4 42988006 42988596 -141300066 + Tigger1 DNA MER2_type 1518 2142 -276 2169 116 3 0 chr4 42988596 42988899 -141299763 - AluSg SINE Alu -6 304 1 10319 100 6 66 chr4 42988899 42989088 -141299574 + Tigger1 DNA MER2_type 2142 2154 -264 2249 107 3 3 chr4 42989088 42989387 -141299275 - AluSq SINE Alu -14 299 1 10319 100 6 66 chr4 42989387 42989638 -141299024 + Tigger1 DNA MER2_type 2154 2418 0 687 220 0 75 chr4 42989638 42989694 -141298968 - MER33 DNA MER1_type -2387 198 139 2058 119 0 7 chr4 42989694 42989987 -141298675 + AluSx SINE Alu 1 291 -21 687 220 0 75 chr4 42989987 42990130 -141298532 - MER33 DNA MER1_type -2446 139 14 320 335 38 29 chr4 42990165 42990374 -141298288 + L2 LINE L2 2513 2723 -591 488 263 15 29 chr4 42990653 42990790 -141297872 + L2 LINE L2 3136 3270 -2 192 267 187 0 chr4 42991276 42991351 -141297311 - L2 LINE L2 -10 3262 3174 353 345 35 0 chr4 42991978 42992149 -141296513 - MLT1I LTR MaLR -232 177 1 232 343 0 0 chr4 42992160 42992227 -141296435 - L2 LINE L2 -978 2336 2270 432 260 16 16 chr4 42992233 42992356 -141296306 - MER5A DNA MER1_type -7 182 60 228 302 43 58 chr4 42992249 42992388 -141296274 + MER5A DNA MER1_type 35 171 -18 * 526 257 150 81 chr4 42992436 42992623 -141296039 - L2 LINE L2 -1216 2098 1925 2244 85 0 0 chr4 42992623 42992904 -141295758 - AluSg SINE Alu -29 281 1 526 257 150 81 chr4 42992904 42993089 -141295573 - L2 LINE L2 -1389 1925 1754 1300 45 13 0 chr4 42993089 42993246 -141295416 - L1PA4 LINE L1 -1 6154 5996 526 257 150 81 chr4 42993246 42993440 -141295222 - L2 LINE L2 -1560 1754 1492 603 205 20 46 chr4 42993457 42993608 -141295054 - MER5B DNA MER1_type -17 161 15 282 338 76 40 chr4 42993663 42993861 -141294801 + L2 LINE L2 3008 3212 -60 2435 70 0 7 chr4 42994183 42994484 -141294178 + AluY SINE Alu 1 299 -12 1263 121 0 0 chr4 42994484 42994658 -141294004 + AluSg/x SINE Alu 132 305 -5 489 261 0 17 chr4 42994954 42995069 -141293593 - MER58B DNA MER1_type -35 306 194 1426 203 92 45 chr4 42995069 42995634 -141293028 - MLT1E1 LTR MaLR 0 593 1 658 205 19 68 chr4 42995637 42995842 -141292820 - MER58B DNA MER1_type -146 195 1 2407 83 3 0 chr4 42996627 42996927 -141291735 + AluSq SINE Alu 1 301 -12 542 301 116 14 chr4 42996929 42997145 -141291517 - MIR SINE MIR -22 240 3 1614 159 50 25 chr4 42997504 42997691 -141290971 - AluJb SINE Alu 0 312 117 405 0 0 0 chr4 42997691 42997736 -141290926 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1614 159 50 25 chr4 42997736 42997850 -141290812 - AluJb SINE Alu -195 117 7 263 286 0 16 chr4 42997962 42998025 -141290637 + L2 LINE L2 3246 3307 -6 606 136 52 97 chr4 42998072 42998168 -141290494 - MER69 DNA AcHobo -1 2525 2437 1737 185 0 19 chr4 42998168 42998482 -141290180 + AluJo SINE Alu 1 308 -4 606 136 52 97 chr4 42998482 42998539 -141290123 - MER69 DNA AcHobo -89 2437 2379 432 175 0 52 chr4 42998540 42998637 -141290025 - L1MA9 LINE L1 0 6312 6221 520 289 96 70 chr4 42998652 42998964 -141289698 + L2 LINE L2 2953 3272 0 1669 99 13 4 chr4 42999117 42999350 -141289312 + AluSx SINE Alu 1 235 -77 2241 124 0 0 chr4 42999877 43000184 -141288478 - AluSq SINE Alu -6 307 1 2323 110 0 0 chr4 43000759 43001067 -141287595 - AluSx SINE Alu -4 308 1 1947 103 44 0 chr4 43001498 43001770 -141286892 + AluY SINE Alu 1 284 -27 352 258 101 0 chr4 43001899 43001988 -141286674 + MIR SINE MIR 43 140 -122 285 351 37 11 chr4 43002187 43002375 -141286287 - MER117 DNA MER1_type -1 196 4 1133 184 109 141 chr4 43002437 43002970 -141285692 - LTR49 LTR ERV1 -50 545 30 276 156 21 10 chr4 43002970 43003066 -141285596 + (TA)n Simple_repeat Simple_repeat 2 98 0 1916 117 0 8 chr4 43003066 43003322 -141285340 - AluSx SINE Alu -21 291 38 613 219 126 27 chr4 43003363 43003546 -141285116 - MIR SINE MIR -28 234 34 514 108 0 14 chr4 43003670 43003744 -141284918 - MER34 LTR ERV1 0 542 470 747 186 0 8 chr4 43003744 43003873 -141284789 + FRAM SINE Alu 47 174 -2 1105 222 74 28 chr4 43003876 43004043 -141284619 - MER34 LTR ERV1 -55 487 300 2285 101 0 7 chr4 43004043 43004341 -141284321 + AluSg SINE Alu 6 301 -9 1105 222 74 28 chr4 43004341 43004456 -141284206 - MER34 LTR ERV1 -242 300 192 268 61 0 0 chr4 43004456 43004489 -141284173 + MER34B LTR ERV1 1 33 -532 * 1358 177 30 97 chr4 43004460 43004821 -141283841 + LTR49 LTR ERV1 5 341 -254 490 171 63 9 chr4 43004871 43004982 -141283680 + LTR48 LTR ERV1 614 730 -57 820 139 0 56 chr4 43004982 43005126 -141283536 - FLAM_C SINE Alu -7 136 1 515 216 37 45 chr4 43005179 43005313 -141283349 - MER34 LTR ERV1 -332 210 78 851 120 165 0 chr4 43005313 43005446 -141283216 + AluSg/x SINE Alu 152 306 -6 404 153 0 0 chr4 43005446 43005505 -141283157 - MER34 LTR ERV1 -471 71 13 370 282 48 8 chr4 43006514 43006638 -141282024 - L2 LINE L2 -3 3269 3141 1179 108 0 0 chr4 43006712 43006869 -141281793 + AluSc SINE Alu 1 157 -152 216 0 0 0 chr4 43006874 43006898 -141281764 + (A)n Simple_repeat Simple_repeat 1 24 0 1965 143 23 0 chr4 43006953 43007253 -141281409 - AluSx SINE Alu -5 307 1 918 112 0 22 chr4 43007780 43007914 -141280748 - AluSx SINE Alu -18 294 164 589 157 0 0 chr4 43007914 43007997 -141280665 - AluSx SINE Alu -229 83 1 10123 32 6 0 chr4 43008357 43010286 -141278376 + L1PA4 LINE L1 4234 6171 0 219 293 43 86 chr4 43010288 43010544 -141278118 - L2 LINE L2 -213 3059 2815 204 231 0 19 chr4 43010967 43011019 -141277643 + (TGAA)n Simple_repeat Simple_repeat 1 51 0 192 298 0 0 chr4 43011118 43011165 -141277497 + L2 LINE L2 2608 2654 -660 327 239 73 9 chr4 43012930 43013039 -141275623 - MIR SINE MIR -66 196 81 508 241 57 71 chr4 43014097 43014309 -141274353 - MER112 DNA MER1_type -1 259 51 2143 95 3 26 chr4 43014380 43014684 -141273978 + AluSx SINE Alu 1 297 -15 187 240 100 0 chr4 43014751 43014801 -141273861 - L2 LINE L2 -1 3271 3217 2367 251 27 6 chr4 43015067 43015594 -141273068 + MLT1H1 LTR MaLR 18 555 0 23 0 0 0 chr4 43015767 43015790 -141272872 + AT_rich Low_complexity Low_complexity 1 23 0 310 257 229 0 chr4 43015833 43015942 -141272720 - MER94 DNA DNA 0 134 1 654 243 60 16 chr4 43016346 43016531 -141272131 + MIR SINE MIR 12 204 -58 277 287 324 7 chr4 43016783 43016919 -141271743 + MER91A DNA MER1_type 4 182 -14 261 0 0 0 chr4 43017176 43017205 -141271457 + (TG)n Simple_repeat Simple_repeat 1 29 0 817 238 63 40 chr4 43017271 43017523 -141271139 - MIR SINE MIR -2 260 3 303 256 96 8 chr4 43018363 43018488 -141270174 + L1ME4a LINE L1 5927 6062 -59 2420 84 0 0 chr4 43018824 43019122 -141269540 - AluSx SINE Alu -13 299 2 744 117 27 9 chr4 43019397 43019508 -141269154 - FRAM SINE Alu -16 160 48 237 224 0 0 chr4 43019512 43019570 -141269092 + (TA)n Simple_repeat Simple_repeat 1 58 0 242 114 0 0 chr4 43019572 43019607 -141269055 - L1MC4 LINE L1 -144 7898 7864 1354 157 83 12 chr4 43019861 43020103 -141268559 - AluJo SINE Alu -53 259 1 2065 122 0 16 chr4 43020110 43020414 -141268248 - AluSx SINE Alu -13 299 1 4846 94 30 5 chr4 43021313 43021941 -141266721 - LTR9B LTR ERV1 0 644 1 554 282 103 54 chr4 43021944 43022373 -141266289 - LTR33 LTR ERVL -1 520 71 1429 160 29 0 chr4 43022387 43022625 -141266037 + L1MC/D LINE L1 5488 5732 -612 483 310 38 22 chr4 43022704 43022888 -141265774 + L2 LINE L2 2588 2774 -540 21 36 0 0 chr4 43023155 43023183 -141265479 + AT_rich Low_complexity Low_complexity 1 28 0 4832 140 48 26 chr4 43023202 43023330 -141265332 - L1MC2 LINE L1 -18 6326 6202 2022 191 93 30 chr4 43023330 43023791 -141264871 - LTR2B LTR ERV1 0 490 1 4832 140 48 26 chr4 43023791 43024518 -141264144 - L1MC2 LINE L1 -142 6202 5452 1798 198 65 72 chr4 43024518 43025070 -141263592 + LTR10A LTR ERV1 1 548 -61 873 226 81 103 chr4 43025079 43025622 -141263040 + LTR10A-int LTR ERV1 1 531 -6118 733 42 53 0 chr4 43025793 43025888 -141262774 + LTR10A-int LTR ERV1 1621 1720 -5176 359 226 167 0 chr4 43025890 43025974 -141262688 - LTR8 LTR ERV1 -438 253 156 11803 156 12 19 chr4 43025975 43029123 -141259539 + Harlequin LTR ERV1 1806 6623 -26 1867 163 152 40 chr4 43029152 43029609 -141259053 + LTR10A LTR ERV1 1 570 -39 2457 68 3 10 chr4 43029609 43029919 -141258743 - AluY SINE Alu -3 308 1 1867 163 152 40 chr4 43029919 43029964 -141258698 + LTR10A LTR ERV1 570 609 0 495 128 0 32 chr4 43029964 43030058 -141258604 - L1MC2 LINE L1 -2587 5455 5365 347 285 92 40 chr4 43030112 43030458 -141258204 - MLT1H LTR MaLR 0 549 114 284 220 0 0 chr4 43030743 43030802 -141257860 - MLT1I LTR MaLR -269 140 82 1247 257 88 14 chr4 43031300 43031791 -141256871 + Charlie2a DNA MER1_type 1628 2154 -708 729 103 206 0 chr4 43031817 43031943 -141256719 - L1PA10 LINE L1 0 6168 6017 295 329 60 20 chr4 43032125 43032274 -141256388 - MER5A DNA MER1_type 0 189 35 * 659 262 20 0 chr4 43032142 43032291 -141256371 + MER5A DNA MER1_type 32 183 -6 479 250 60 49 chr4 43032834 43033169 -141255493 - MLT1H LTR MaLR -7 542 123 258 279 29 0 chr4 43033345 43033413 -141255249 + L2 LINE L2 3242 3311 -2 7245 47 10 0 chr4 43033499 43034772 -141253890 + L1PA6 LINE L1 4868 6149 -5 281 216 11 0 chr4 43035438 43035526 -141253136 + GA-rich Low_complexity Low_complexity 3 91 0 760 94 28 33 chr4 43035545 43035725 -141252937 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 287 232 12 0 chr4 43035749 43035831 -141252831 + GA-rich Low_complexity Low_complexity 3 85 0 2392 92 10 0 chr4 43035934 43036238 -141252424 + AluSx SINE Alu 1 307 -5 518 244 90 6 chr4 43037035 43037253 -141251409 - MIR SINE MIR -21 241 4 350 204 68 0 chr4 43037718 43037806 -141250856 + MIR SINE MIR 79 172 -90 2209 106 0 26 chr4 43037807 43038119 -141250543 - AluSq SINE Alu -9 304 1 344 302 58 13 chr4 43038289 43038502 -141250160 + MIR SINE MIR 1 222 -40 383 292 91 27 chr4 43040058 43040277 -141248385 - L2 LINE L2 -6 3307 3075 207 0 0 0 chr4 43040297 43040320 -141248342 + (A)n Simple_repeat Simple_repeat 1 23 0 2013 128 7 7 chr4 43040464 43040754 -141247908 + AluSx SINE Alu 1 290 -22 1741 184 125 21 chr4 43041670 43042093 -141246569 + MLT1C LTR MaLR 1 467 0 209 95 0 24 chr4 43042167 43042209 -141246453 + (TTTTTA)n Simple_repeat Simple_repeat 2 42 0 2250 146 42 30 chr4 43042485 43042988 -141245674 - MLT2A2 LTR ERVL 0 515 1 1843 172 3 3 chr4 43043829 43044125 -141244537 + AluJb SINE Alu 1 296 -16 2202 98 0 3 chr4 43044148 43044466 -141244196 + AluSx SINE Alu 1 317 0 247 220 17 18 chr4 43046257 43046327 -141242335 + MIR SINE MIR 43 116 -92 1019 270 114 36 chr4 43047075 43047795 -141240867 + L1ME4a LINE L1 5337 6119 -2 1830 150 44 0 chr4 43047799 43048092 -141240570 - AluJo SINE Alu -6 306 1 1001 217 82 3 chr4 43048759 43049213 -141239449 + LTR33 LTR ERVL 2 513 -8 2586 74 0 0 chr4 43049943 43050254 -141238408 + AluY SINE Alu 1 311 0 1069 168 110 70 chr4 43051066 43051104 -141237558 - L1MC4 LINE L1 -256 7786 7751 2472 91 0 0 chr4 43051104 43051412 -141237250 - AluY SINE Alu -3 308 1 1069 168 110 70 chr4 43051412 43051510 -141237152 - L1MC4 LINE L1 -291 7751 7658 2162 140 0 0 chr4 43051510 43051817 -141236845 - AluSx SINE Alu -5 307 1 1069 168 110 70 chr4 43051817 43052024 -141236638 - L1MC4 LINE L1 -384 7658 7428 194 306 27 27 chr4 43053642 43053789 -141234873 - L2 LINE L2 -171 3101 2955 510 208 85 176 chr4 43053799 43054043 -141234619 + L2 LINE L2 2876 3056 -257 2300 104 3 0 chr4 43054043 43054341 -141234321 - AluSq SINE Alu -14 299 1 510 208 85 176 chr4 43054341 43054578 -141234084 + L2 LINE L2 3056 3313 0 549 327 36 14 chr4 43055025 43055438 -141233224 + L2 LINE L2 2365 2786 -528 2091 117 127 24 chr4 43055439 43055816 -141232846 + MSTA LTR MaLR 1 416 -12 333 306 169 4 chr4 43055817 43056078 -141232584 + L2 LINE L2 2804 3107 -206 1086 250 42 7 chr4 43056138 43056601 -141232061 - LTR33 LTR ERVL -3 518 1 2071 71 0 26 chr4 43056663 43056932 -141231730 + AluY SINE Alu 39 300 -11 2156 95 0 0 chr4 43056972 43057300 -141231362 + AluY SINE Alu 1 328 0 2006 144 3 0 chr4 43057309 43057594 -141231068 + AluSx SINE Alu 1 286 -26 2471 76 7 3 chr4 43057836 43058138 -141230524 + AluSp SINE Alu 1 303 -10 2016 115 40 0 chr4 43058387 43058665 -141229997 - AluSx SINE Alu -21 291 3 2436 72 3 0 chr4 43058744 43059048 -141229614 - AluY SINE Alu -5 306 2 2209 96 24 0 chr4 43059096 43059387 -141229275 - AluSc SINE Alu -11 298 1 210 154 0 26 chr4 43059682 43059721 -141228941 + GA-rich Low_complexity Low_complexity 3 40 0 391 275 38 0 chr4 43059779 43059910 -141228752 - MIR SINE MIR -61 201 66 2516 41 7 0 chr4 43060452 43060742 -141227920 - AluY SINE Alu -19 292 1 2266 110 0 0 chr4 43061123 43061424 -141227238 + AluSx SINE Alu 1 301 -11 537 267 47 58 chr4 43061478 43061736 -141226926 + MLT1I LTR MaLR 28 282 -127 2257 108 0 10 chr4 43062122 43062429 -141226233 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr4 43063151 43063173 -141225489 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 43063629 43063652 -141225010 + AT_rich Low_complexity Low_complexity 1 23 0 2091 125 3 13 chr4 43063652 43063964 -141224698 - AluSc SINE Alu 0 309 1 494 267 41 12 chr4 43064097 43064269 -141224393 + MER117 DNA MER1_type 1 177 -20 287 308 44 15 chr4 43065008 43065188 -141223474 - MIR SINE MIR -2 260 3 1091 199 7 15 chr4 43066933 43067195 -141221467 + MLT1A1 LTR MaLR 1 328 -37 2413 93 0 0 chr4 43067195 43067497 -141221165 + AluY SINE Alu 1 302 -9 1091 199 7 15 chr4 43067497 43067535 -141221127 + MLT1A1 LTR MaLR 328 365 0 373 329 0 7 chr4 43067563 43067703 -141220959 + (TG)n Simple_repeat Simple_repeat 1 139 0 457 229 0 71 chr4 43068800 43068879 -141219783 - MIR SINE MIR -26 236 169 2174 97 0 21 chr4 43068879 43069192 -141219470 - AluSg SINE Alu 0 308 2 457 229 0 71 chr4 43069192 43069251 -141219411 - MIR SINE MIR -93 169 107 1899 212 105 26 chr4 43069340 43069798 -141218864 + MLT2B1 LTR ERVL 1 494 -26 184 122 49 0 chr4 43069799 43069840 -141218822 + (TA)n Simple_repeat Simple_repeat 2 44 0 380 297 126 28 chr4 43069962 43070144 -141218518 + MIR SINE MIR 8 207 -55 512 167 23 61 chr4 43070147 43070279 -141218383 - Charlie5 DNA MER1_type 0 2621 2495 5401 132 19 16 chr4 43070285 43070509 -141218153 + Tigger1 DNA MER2_type 24 246 -2172 2313 105 0 0 chr4 43070509 43070805 -141217857 - AluSx SINE Alu -16 296 1 5401 132 19 16 chr4 43070805 43071411 -141217251 + Tigger1 DNA MER2_type 246 857 -1561 24 0 0 0 chr4 43073386 43073410 -141215252 + AT_rich Low_complexity Low_complexity 1 24 0 396 267 133 38 chr4 43073506 43073716 -141214946 + MER102a DNA MER1_type 99 328 -2 2255 109 85 15 chr4 43074125 43074465 -141214197 - THE1B LTR MaLR 0 364 1 2210 104 20 0 chr4 43074907 43075204 -141213458 - AluSc SINE Alu -6 303 1 21 0 0 0 chr4 43075304 43075325 -141213337 + AT_rich Low_complexity Low_complexity 1 21 0 620 236 68 44 chr4 43075401 43075651 -141213011 + MER112 DNA MER1_type 1 256 0 1653 176 37 4 chr4 43075851 43076158 -141212504 + AluJo SINE Alu 1 316 0 1580 180 0 21 chr4 43076702 43076985 -141211677 + AluJb SINE Alu 1 277 -35 2385 96 3 0 chr4 43077038 43077339 -141211323 + AluSp SINE Alu 1 302 -11 332 274 29 98 chr4 43078854 43079058 -141209604 - MIR SINE MIR 0 262 73 515 274 42 30 chr4 43079648 43079951 -141208711 - MER115 DNA AcHobo -256 437 67 390 235 12 0 chr4 43079953 43080038 -141208624 + MER5A DNA MER1_type 9 94 -95 2382 90 0 7 chr4 43080056 43080355 -141208307 - AluSx SINE Alu -15 297 1 2389 69 0 16 chr4 43181172 43181477 -141107185 - AluY SINE Alu -3 308 9 372 266 110 32 chr4 43181781 43181999 -141106663 - L1MC4a LINE L1 -1778 6030 5796 232 243 57 0 chr4 43181979 43182049 -141106613 - L1P3 LINE L1 -381 5791 5718 * 1940 123 0 0 chr4 43182065 43182318 -141106344 + AluSx SINE Alu 1 253 -59 505 163 0 0 chr4 43182318 43182398 -141106264 + AluJ/FRAM SINE Alu 224 303 -9 385 269 218 24 chr4 43182399 43182697 -141105965 - L1MC4a LINE L1 -2101 5707 5352 8208 99 24 4 chr4 43182800 43183939 -141104723 + THE1-int LTR MaLR 420 1580 0 279 180 86 35 chr4 43184144 43184246 -141104416 - MLT1L LTR MaLR 0 615 399 2376 61 34 0 chr4 43184703 43184997 -141103665 + AluY SINE Alu 1 304 -7 286 257 80 26 chr4 43186980 43187093 -141101569 - Tigger8 DNA MER2_type -413 253 135 510 299 34 48 chr4 43187729 43187936 -141100726 + MIR SINE MIR 53 256 -6 1787 117 4 0 chr4 43187985 43188225 -141100437 + AluSx SINE Alu 2 242 -70 243 0 0 0 chr4 43188227 43188254 -141100408 + (A)n Simple_repeat Simple_repeat 1 27 0 1683 122 0 9 chr4 43188256 43188485 -141100177 + AluSq SINE Alu 1 227 -86 250 323 121 10 chr4 43188629 43188728 -141099934 + L2 LINE L2 3127 3236 -36 25 0 0 0 chr4 43188776 43188801 -141099861 + AT_rich Low_complexity Low_complexity 1 25 0 229 269 108 84 chr4 43190663 43190830 -141097832 - MIR3 SINE MIR -27 181 1 23 0 0 0 chr4 43191910 43191933 -141096729 + AT_rich Low_complexity Low_complexity 1 23 0 216 67 0 0 chr4 43192203 43192233 -141096429 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 254 344 98 47 chr4 43192931 43193363 -141095299 + L2 LINE L2 2614 3053 -219 1089 244 18 0 chr4 43193708 43193925 -141094737 + MER58A DNA MER1_type 1 221 -3 642 232 140 0 chr4 43193935 43194099 -141094563 + MER5A DNA MER1_type 1 187 -2 214 313 212 0 chr4 43194250 43194349 -141094313 + L2 LINE L2 3191 3310 -3 266 130 43 0 chr4 43194681 43194727 -141093935 + MIR SINE MIR 183 230 -32 3876 70 12 0 chr4 43194906 43195406 -141093256 - THE1B-int LTR MaLR -1073 507 2 2431 122 48 17 chr4 43195407 43195760 -141092902 - THE1B LTR MaLR 0 364 1 183 42 0 0 chr4 43195959 43195983 -141092679 + (CAG)n Simple_repeat Simple_repeat 1 24 0 1051 296 30 21 chr4 43196400 43197063 -141091599 + L2 LINE L2 2570 3313 0 595 167 25 17 chr4 43199094 43199214 -141089448 + MLT1B LTR MaLR 259 379 -11 2069 138 3 6 chr4 43199983 43200295 -141088367 + AluSq SINE Alu 3 313 0 267 54 0 0 chr4 43200322 43200359 -141088303 + (A)n Simple_repeat Simple_repeat 1 37 0 384 322 47 0 chr4 43201393 43201542 -141087120 + MER103 DNA DNA 11 166 0 246 292 88 26 chr4 43201667 43201780 -141086882 + MIR3 SINE MIR 69 188 -20 299 339 85 0 chr4 43202825 43202955 -141085707 + L2 LINE L2 2637 2777 -537 565 251 139 71 chr4 43202975 43203298 -141085364 + L2 LINE L2 2965 3309 -4 1387 107 13 31 chr4 43203569 43203794 -141084868 - L1PBa LINE L1 -6007 856 636 700 168 17 0 chr4 43203796 43203915 -141084747 - L1PBa LINE L1 -6663 200 80 835 166 109 49 chr4 43203915 43204302 -141084360 - LTR7 LTR ERV1 0 450 1 517 125 25 0 chr4 43204303 43204383 -141084279 - L1PBa LINE L1 -6780 83 2 846 118 128 21 chr4 43204385 43204511 -141084151 - L1 LINE L1 -1535 4611 4457 1953 94 24 42 chr4 43204511 43204799 -141083863 - AluSq SINE Alu -12 301 19 846 118 128 21 chr4 43204799 43204859 -141083803 - L1 LINE L1 -1689 4457 4405 436 242 11 0 chr4 43205831 43205926 -141082736 + MER103 DNA DNA 21 116 -50 204 313 45 45 chr4 43206644 43206756 -141081906 + MIR SINE MIR 16 127 -81 2166 140 100 124 chr4 43206884 43207335 -141081327 - Charlie1 DNA MER1_type -6 2755 2295 2317 123 0 0 chr4 43207335 43207645 -141081017 - AluSx SINE Alu -2 310 1 2166 140 100 124 chr4 43207645 43207776 -141080886 - Charlie1 DNA MER1_type -466 2295 2187 2340 106 0 0 chr4 43207776 43208078 -141080584 - AluSx SINE Alu -10 302 1 2166 140 100 124 chr4 43208078 43208123 -141080539 - Charlie1 DNA MER1_type -574 2187 2142 782 180 156 47 chr4 43208150 43208361 -141080301 - Charlie1 DNA MER1_type -1034 1727 1494 283 211 19 0 chr4 43208371 43208423 -141080239 - Charlie1 DNA MER1_type -2708 53 1 413 75 0 0 chr4 43208576 43208629 -141080033 + MLT2A1 LTR ERVL 392 444 0 7774 74 8 0 chr4 43208629 43209604 -141079058 + HERVL-A1 LTR ERVL 1 983 -4671 * 29035 62 16 19 chr4 43209583 43213300 -141075362 + HERVL-A1 LTR ERVL 1659 5361 -293 1807 189 27 3 chr4 43213302 43213678 -141074984 + L1 LINE L1 4014 4398 -1748 319 151 0 14 chr4 43213678 43213740 -141074922 + Alu SINE Alu 1 44 -255 211 224 15 0 chr4 43263764 43263831 -141024831 + (TA)n Simple_repeat Simple_repeat 1 68 0 629 230 153 9 chr4 43264749 43264971 -141023691 + MIR SINE MIR 2 255 -7 478 305 107 30 chr4 43264990 43265187 -141023475 + MIR SINE MIR 36 247 -15 4182 139 39 53 chr4 43265552 43265612 -141023050 - L1P LINE L1 -766 5380 5321 2289 101 3 0 chr4 43265612 43265909 -141022753 - AluSp SINE Alu -15 298 1 4182 139 39 53 chr4 43265909 43266227 -141022435 - L1P LINE L1 -825 5321 5000 2248 101 3 19 chr4 43266227 43266543 -141022119 - AluSq SINE Alu -2 311 1 4182 139 39 53 chr4 43266543 43267110 -141021552 - L1P LINE L1 -1146 5000 4447 2346 114 0 0 chr4 43267327 43267634 -141021028 - AluSx SINE Alu -5 307 1 306 0 0 0 chr4 43267834 43267868 -141020794 + (TAAAAA)n Simple_repeat Simple_repeat 2 35 0 406 278 35 26 chr4 43267955 43268070 -141020592 + L2 LINE L2 3196 3311 -2 21 0 0 0 chr4 43268173 43268194 -141020468 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr4 43268222 43268251 -141020411 + AT_rich Low_complexity Low_complexity 1 29 0 2205 101 0 16 chr4 43268780 43269087 -141019575 + AluSx SINE Alu 1 302 -10 216 0 0 0 chr4 43269090 43269114 -141019548 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 295 275 89 30 chr4 43269493 43269762 -141018900 - L1M4 LINE L1 -1608 4538 4254 522 263 93 111 chr4 43269947 43270760 -141017902 + L2 LINE L2 2511 3310 -3 2829 188 28 2 chr4 43270904 43271485 -141017177 + L1MB7 LINE L1 5570 6165 -19 2384 92 0 0 chr4 43274662 43274956 -141013706 - AluSg SINE Alu -16 294 1 705 193 133 0 chr4 43275465 43275631 -141013031 + MER5A DNA MER1_type 2 189 0 234 313 79 62 chr4 43275737 43275977 -141012685 + L2 LINE L2 1745 1988 -1326 21 0 0 0 chr4 43276454 43276475 -141012187 + AT_rich Low_complexity Low_complexity 1 21 0 1228 152 148 65 chr4 43279633 43279867 -141008795 + MER2 DNA MER2_type 1 269 -76 2217 118 0 9 chr4 43279867 43280182 -141008480 - AluSx SINE Alu 0 312 1 1228 152 148 65 chr4 43280182 43280257 -141008405 + MER2 DNA MER2_type 269 336 -9 180 128 0 103 chr4 43281295 43281334 -141007328 - MIR3 SINE MIR -42 166 132 22 0 0 0 chr4 43282022 43282044 -141006618 + AT_rich Low_complexity Low_complexity 1 22 0 387 325 179 16 chr4 43284445 43284898 -141003764 + L2 LINE L2 1977 2503 -811 * 582 253 114 12 chr4 43284896 43285062 -141003600 - L2 LINE L2 0 3313 3131 333 198 55 44 chr4 43285250 43285341 -141003321 - MIR SINE MIR -1 261 170 743 118 0 0 chr4 43285349 43285459 -141003203 - Alu SINE Alu -12 298 189 215 301 143 30 chr4 43285466 43285599 -141003063 + L2 LINE L2 3165 3312 -1 208 333 194 14 chr4 43286195 43286339 -141002323 + MIR SINE MIR 23 192 -70 620 311 79 9 chr4 43286347 43286575 -141002087 - MIR SINE MIR -6 256 13 2195 118 0 0 chr4 43286697 43286985 -141001677 + AluSx SINE Alu 1 288 -24 21 0 0 0 chr4 43287539 43287560 -141001102 + AT_rich Low_complexity Low_complexity 1 21 0 34 0 0 0 chr4 43288485 43288519 -141000143 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr4 43290901 43290924 -140997738 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 43291327 43291348 -140997314 + AT_rich Low_complexity Low_complexity 1 21 0 221 326 155 39 chr4 43292203 43292332 -140996330 - MIR3 SINE MIR -27 181 38 185 338 62 0 chr4 43295433 43295513 -140993149 + MIR SINE MIR 173 257 -5 2266 67 0 17 chr4 43295647 43295947 -140992715 + AluY SINE Alu 17 311 0 816 331 36 24 chr4 43296129 43296464 -140992198 + L3 LINE CR1 1038 1376 -201 26 64 0 0 chr4 43297025 43297072 -140991590 + AT_rich Low_complexity Low_complexity 1 47 0 260 350 38 27 chr4 43297269 43297455 -140991207 - MIR SINE MIR -46 216 29 26 0 0 0 chr4 43298451 43298477 -140990185 + AT_rich Low_complexity Low_complexity 1 26 0 27 49 0 0 chr4 43298764 43298805 -140989857 + AT_rich Low_complexity Low_complexity 1 41 0 304 171 45 0 chr4 43298811 43298899 -140989763 + (TA)n Simple_repeat Simple_repeat 2 93 0 2506 66 0 0 chr4 43300572 43300874 -140987788 - AluY SINE Alu -9 302 1 1369 225 44 19 chr4 43301400 43301765 -140986897 + MLT1A2 LTR MaLR 1 374 0 22 35 0 0 chr4 43302420 43302449 -140986213 + AT_rich Low_complexity Low_complexity 1 29 0 219 267 0 33 chr4 43303679 43303739 -140984923 + GA-rich Low_complexity Low_complexity 4 61 0 1530 269 170 11 chr4 43303746 43304405 -140984257 + L2 LINE L2 1719 2482 -832 820 298 28 92 chr4 43304377 43304814 -140983848 + L2 LINE L2 2804 3212 -101 * 1125 186 67 1 chr4 43304814 43305123 -140983539 + MLT1A1 LTR MaLR 1 364 -1 361 257 40 10 chr4 43305124 43305225 -140983437 + L2 LINE L2 3208 3311 -2 295 147 80 27 chr4 43306663 43306738 -140981924 - L1PA13 LINE L1 -11 6152 6074 2271 103 10 0 chr4 43306739 43307040 -140981622 - AluSg SINE Alu -2 308 5 2486 47 0 7 chr4 43307053 43307349 -140981313 - AluY SINE Alu -17 294 1 34 24 0 0 chr4 43311259 43311300 -140977362 + AT_rich Low_complexity Low_complexity 1 41 0 1397 190 123 3 chr4 43312053 43312363 -140976299 - MER7A DNA MER2_type 0 346 2 22 56 0 0 chr4 43313060 43313096 -140975566 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr4 43313587 43313618 -140975044 + AT_rich Low_complexity Low_complexity 1 31 0 247 279 108 62 chr4 43314177 43314306 -140974356 - MIR SINE MIR -79 183 49 21 0 0 0 chr4 43314359 43314380 -140974282 + AT_rich Low_complexity Low_complexity 1 21 0 2359 100 10 0 chr4 43315829 43316138 -140972524 + AluSx SINE Alu 1 312 0 259 238 213 12 chr4 43316896 43316976 -140971686 + L2 LINE L2 3214 3309 -4 323 226 71 58 chr4 43317041 43317196 -140971466 - L1ME LINE L1 -329 5792 5636 21 0 0 0 chr4 43319003 43319024 -140969638 + AT_rich Low_complexity Low_complexity 1 21 0 4277 60 24 24 chr4 43320305 43320892 -140967770 + L1PA12 LINE L1 5567 6153 -15 35 24 0 0 chr4 43321188 43321230 -140967432 + AT_rich Low_complexity Low_complexity 1 42 0 544 267 67 29 chr4 43321892 43322207 -140966455 + L1ME4a LINE L1 5758 6084 -37 287 313 110 87 chr4 43324885 43325185 -140963477 + L2 LINE L2 2962 3268 -4 319 308 69 25 chr4 43327870 43328029 -140960633 + MIR SINE MIR 86 251 -11 407 326 21 28 chr4 43329794 43329935 -140958727 + MIR3 SINE MIR 58 197 -11 334 315 87 0 chr4 43330435 43330562 -140958100 - L2 LINE L2 0 3313 3176 522 225 84 28 chr4 43330625 43330767 -140957895 + MIR SINE MIR 110 259 -3 311 284 148 18 chr4 43330811 43330980 -140957682 - L2 LINE L2 -239 3074 2884 349 328 52 0 chr4 43331078 43331212 -140957450 - L2 LINE L2 -663 2651 2511 335 208 57 9 chr4 43331310 43331416 -140957246 + Charlie5 DNA MER1_type 2436 2546 -66 222 267 82 30 chr4 43331613 43331762 -140956900 + MIR SINE MIR 66 262 0 308 273 136 0 chr4 43331803 43331913 -140956749 + MIR SINE MIR 26 150 -112 264 264 0 0 chr4 43332748 43332835 -140955827 - L1MC4 LINE L1 -1339 6703 6617 351 0 0 0 chr4 43333123 43333162 -140955500 + (CA)n Simple_repeat Simple_repeat 2 40 0 1093 216 97 22 chr4 43336760 43337079 -140951583 + MER2 DNA MER2_type 2 344 0 188 333 13 26 chr4 43338193 43338271 -140950391 + L3 LINE CR1 812 888 -689 413 179 295 58 chr4 43338323 43338479 -140950183 + L3 LINE CR1 1385 1577 0 668 265 60 19 chr4 43340395 43340610 -140948052 + L2 LINE L2 2381 2604 -710 410 230 40 0 chr4 43340617 43340717 -140947945 + MER5B DNA MER1_type 65 168 -10 289 266 75 20 chr4 43340751 43340899 -140947763 - MIR SINE MIR -64 144 10 561 217 63 57 chr4 43342441 43342616 -140946046 - MER5B DNA MER1_type 0 178 3 667 191 88 4 chr4 43344328 43344529 -140944133 + MER33 DNA MER1_type 1 218 -106 32 86 0 0 chr4 43344529 43344610 -140944052 + AT_rich Low_complexity Low_complexity 1 81 0 349 244 93 63 chr4 43345059 43345264 -140943398 + L1ME LINE L1 4498 4708 -1438 624 260 114 4 chr4 43345896 43346142 -140942520 + L1ME LINE L1 5479 5751 -370 403 237 32 11 chr4 43346215 43346308 -140942354 - L2 LINE L2 0 3313 3219 381 280 40 8 chr4 43346632 43346757 -140941905 - L2 LINE L2 0 3313 3185 468 138 154 49 chr4 43346838 43346961 -140941701 - L2 LINE L2 0 3313 3178 2403 104 34 14 chr4 43347908 43348265 -140940397 + THE1B LTR MaLR 1 364 0 1298 68 39 10 chr4 43348265 43348472 -140940190 + THE1B-int LTR MaLR 1 213 -1367 359 65 0 0 chr4 43348473 43348519 -140940143 + THE1A LTR MaLR 310 355 0 566 253 61 31 chr4 43348673 43348902 -140939760 + MLT1J LTR MaLR 231 466 -45 238 295 179 6 chr4 43348980 43349136 -140939526 + L2 LINE L2 2138 2320 -994 252 294 87 11 chr4 43349254 43349346 -140939316 + MER5A DNA MER1_type 7 105 -84 2429 91 67 3 chr4 43349569 43349911 -140938751 + THE1B LTR MaLR 1 364 0 183 204 23 0 chr4 43349914 43349958 -140938704 + L2 LINE L2 2826 2870 -443 588 98 22 11 chr4 43349967 43350059 -140938603 + THE1B LTR MaLR 272 364 0 885 254 206 24 chr4 43350062 43350475 -140938187 + L2 LINE L2 2826 3313 0 190 371 34 0 chr4 43350681 43350770 -140937892 + L3 LINE CR1 1478 1569 -8 546 220 176 6 chr4 43350989 43351148 -140937514 + MER5A DNA MER1_type 4 189 0 320 265 49 29 chr4 43352067 43352169 -140936493 - L2 LINE L2 -18 3254 3151 * 342 293 17 12 chr4 43352152 43352326 -140936336 + MIR SINE MIR 48 222 -40 193 301 151 11 chr4 43353020 43353113 -140935549 - L2 LINE L2 -10 3262 3157 381 312 138 42 chr4 43353873 43354258 -140934404 - L1M2 LINE L1 -5919 930 509 3752 156 70 39 chr4 43357485 43357781 -140930881 + L1MB8 LINE L1 4869 5154 -1024 2256 92 4 0 chr4 43357781 43358090 -140930572 + AluSx SINE Alu 3 312 0 3752 156 70 39 chr4 43358090 43358229 -140930433 + L1MB8 LINE L1 5154 5287 -891 1580 185 11 17 chr4 43358229 43358516 -140930146 + AluJb SINE Alu 13 297 -15 3752 156 70 39 chr4 43358516 43359352 -140929310 + L1MB8 LINE L1 5287 6177 -1 603 330 136 16 chr4 43360028 43360395 -140928267 + L2 LINE L2 2483 2893 -421 374 293 138 25 chr4 43360383 43360622 -140928040 + L2 LINE L2 3048 3313 0 * 25 31 0 0 chr4 43361379 43361411 -140927251 + AT_rich Low_complexity Low_complexity 1 32 0 638 204 20 13 chr4 43361592 43361744 -140926918 - L1MA10 LINE L1 -2 6332 6180 279 378 15 22 chr4 43361787 43361922 -140926740 - L2 LINE L2 -1 3312 3179 26 0 0 0 chr4 43362194 43362220 -140926442 + AT_rich Low_complexity Low_complexity 1 26 0 1279 96 0 0 chr4 43362406 43362563 -140926099 + AluSc SINE Alu 1 157 -152 3065 145 15 28 chr4 43362704 43363249 -140925413 - MER34 LTR ERV1 -4 538 1 733 251 231 63 chr4 43363337 43363683 -140924979 - L1MC4 LINE L1 -2 8040 7754 1957 151 0 0 chr4 43363683 43363967 -140924695 - AluSx SINE Alu -28 284 1 733 251 231 63 chr4 43363967 43364000 -140924662 - L1MC4 LINE L1 -288 7754 7728 180 0 0 0 chr4 43364000 43364020 -140924642 + (TA)n Simple_repeat Simple_repeat 2 21 0 733 251 231 63 chr4 43364020 43364453 -140924209 - L1MC4 LINE L1 -314 7728 7090 1923 126 7 0 chr4 43364742 43365013 -140923649 - AluSx SINE Alu -39 273 1 3090 131 15 9 chr4 43365285 43365811 -140922851 - Tigger3(Golem) DNA MER2_type -1 3028 2500 5591 45 0 3 chr4 43365811 43366497 -140922165 - L1PA4 LINE L1 0 6155 5472 410 154 13 0 chr4 43366774 43366852 -140921810 + (TG)n Simple_repeat Simple_repeat 2 80 0 354 193 114 0 chr4 43366899 43366987 -140921675 + MIR SINE MIR 117 214 -48 322 159 0 0 chr4 43367569 43367632 -140921030 + THE1B LTR MaLR 1 63 -301 392 91 61 15 chr4 43367732 43367798 -140920864 + L1M4c LINE L1 630 698 -5686 260 65 43 22 chr4 43367821 43367867 -140920795 + AluSq/x SINE Alu 89 135 -167 2406 76 3 3 chr4 43367867 43368168 -140920494 + AluY SINE Alu 1 301 -10 1932 137 10 26 chr4 43368177 43368483 -140920179 + AluSx SINE Alu 2 302 -10 1832 160 14 0 chr4 43368483 43368840 -140919822 + L1M4c LINE L1 892 1253 -5131 1885 126 18 24 chr4 43368988 43369090 -140919572 - L1MA5A LINE L1 -6 6291 6190 5081 63 17 5 chr4 43369090 43369742 -140918920 - PABL_A LTR ERV1 0 660 1 1885 126 18 24 chr4 43369742 43369973 -140918689 - L1MA5A LINE L1 -107 6190 5960 597 196 9 0 chr4 43369982 43370089 -140918573 - AluSc SINE Alu -53 256 149 943 133 4 122 chr4 43370089 43370257 -140918405 - L1MA5A LINE L1 -325 5972 5843 1757 191 0 10 chr4 43370257 43370556 -140918106 - AluJb SINE Alu -16 296 1 943 133 4 122 chr4 43370556 43370642 -140918020 - L1MA5A LINE L1 -454 5843 5748 2846 68 90 0 chr4 43370815 43371225 -140917437 - L1PA8A LINE L1 -350 5781 5335 234 353 48 60 chr4 43371251 43371270 -140917392 + MIR SINE MIR 81 99 -163 2272 191 65 63 chr4 43371270 43371873 -140916789 - MER77 LTR ERV1 0 605 2 234 353 48 60 chr4 43371873 43372020 -140916642 + MIR SINE MIR 99 245 -17 3271 223 23 6 chr4 43372180 43373150 -140915512 + L1M4 LINE L1 4444 5428 -743 2169 157 20 3 chr4 43373167 43373827 -140914835 + L1P5 LINE L1 4934 5605 -546 219 69 0 0 chr4 43374316 43374345 -140914317 + (TC)n Simple_repeat Simple_repeat 2 30 0 257 289 13 40 chr4 43374667 43374743 -140913919 + MIR3 SINE MIR 129 202 -6 665 55 0 11 chr4 43374779 43374870 -140913792 + (GGAA)n Simple_repeat Simple_repeat 1 90 0 345 210 65 101 chr4 43375947 43376034 -140912628 - L2 LINE L2 -5 3308 3226 2294 110 0 0 chr4 43376034 43376333 -140912329 + AluSq SINE Alu 1 299 -14 345 210 65 101 chr4 43376333 43376383 -140912279 - L2 LINE L2 -87 3226 3176 297 0 0 0 chr4 43377964 43377997 -140910665 + (TA)n Simple_repeat Simple_repeat 1 33 0 192 176 44 0 chr4 43378101 43378169 -140910493 + (TA)n Simple_repeat Simple_repeat 1 71 0 233 250 23 0 chr4 43378230 43378318 -140910344 - L1MC4 LINE L1 -1339 6703 6614 266 372 80 15 chr4 43378518 43378655 -140910007 + L2 LINE L2 3127 3272 0 1414 256 14 26 chr4 43379101 43379527 -140909135 - LTR40c LTR ERVL -22 443 23 21 0 0 0 chr4 43379601 43379622 -140909040 + AT_rich Low_complexity Low_complexity 1 21 0 259 343 176 27 chr4 43379735 43380286 -140908376 - L2 LINE L2 -431 2883 2251 558 270 0 0 chr4 43380412 43380527 -140908135 + FLAM_A SINE Alu 1 115 -18 3764 113 3 15 chr4 43380531 43380969 -140907693 - L1PA16 LINE L1 -62 6104 5673 1756 173 10 23 chr4 43380969 43381275 -140907387 - AluJo SINE Alu -10 302 1 3764 113 3 15 chr4 43381275 43381436 -140907226 - L1PA16 LINE L1 -493 5673 5512 38 22 0 0 chr4 43381543 43381588 -140907074 + AT_rich Low_complexity Low_complexity 1 45 0 279 315 55 42 chr4 43381635 43381800 -140906862 - L2 LINE L2 -1372 1942 1776 867 208 80 109 chr4 43381972 43382448 -140906214 - LTR37B LTR ERV1 0 468 7 865 274 87 48 chr4 43382483 43382667 -140905995 - LTR33 LTR ERVL 0 521 345 2098 142 3 7 chr4 43382667 43382977 -140905685 + AluSx SINE Alu 1 309 -3 865 274 87 48 chr4 43382977 43383289 -140905373 - LTR33 LTR ERVL -176 345 6 358 239 11 0 chr4 43383393 43383481 -140905181 - L1P LINE L1 -1257 4889 4801 241 394 21 16 chr4 43383611 43383804 -140904858 - L2 LINE L2 -1963 1351 1158 6386 126 1 0 chr4 43383904 43384945 -140903717 + L1P LINE L1 4253 5294 -852 1329 208 13 20 chr4 43385048 43385543 -140903119 - L1PA15-16 LINE L1 -3670 2476 1989 25 31 0 0 chr4 43385935 43385967 -140902695 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr4 43387073 43387096 -140901566 + AT_rich Low_complexity Low_complexity 1 23 0 1072 153 16 0 chr4 43387492 43387681 -140900981 - MLT1D LTR MaLR -290 215 24 385 279 103 0 chr4 43388795 43388931 -140899731 - MIR SINE MIR -29 233 84 249 311 127 32 chr4 43388934 43389217 -140899445 + L2 LINE L2 1994 2303 -1011 1792 204 22 0 chr4 43389451 43389808 -140898854 + MLT1A1 LTR MaLR 1 365 0 226 176 0 59 chr4 43390822 43390873 -140897789 + GA-rich Low_complexity Low_complexity 3 50 0 1690 225 17 0 chr4 43391008 43391363 -140897299 - MLT1A1 LTR MaLR 0 365 5 261 331 167 14 chr4 43391828 43392175 -140896487 + L2 LINE L2 2120 2519 -795 332 333 8 48 chr4 43392261 43392326 -140896336 + L2 LINE L2 3193 3252 -61 816 238 33 28 chr4 43392326 43392540 -140896122 - MER20 DNA MER1_type -4 215 1 332 333 8 48 chr4 43392540 43392600 -140896062 + L2 LINE L2 3252 3313 0 291 261 65 85 chr4 43392742 43392895 -140895767 + MER5A DNA MER1_type 29 189 0 240 284 98 29 chr4 43392895 43392985 -140895677 + MIR SINE MIR 32 128 -80 399 251 191 16 chr4 43393037 43393220 -140895442 - MIR SINE MIR -3 259 45 220 257 257 46 chr4 43393553 43393705 -140894957 + MER5A DNA MER1_type 4 187 -2 308 333 123 0 chr4 43394618 43394732 -140893930 + MIR3 SINE MIR 33 160 -48 21 0 0 0 chr4 43394876 43394897 -140893765 + AT_rich Low_complexity Low_complexity 1 21 0 599 275 0 34 chr4 43395043 43395221 -140893441 - MIR SINE MIR 0 262 91 1564 284 9 28 chr4 43395807 43396377 -140892285 + L1MCb LINE L1 4 562 -5483 752 274 9 18 chr4 43396440 43396714 -140891948 + L1MCb LINE L1 572 821 -5224 * 5344 165 12 6 chr4 43396697 43397758 -140890904 + L1MA3 LINE L1 4053 5120 -1026 4256 132 12 21 chr4 43397762 43398519 -140890143 + L1MA3 LINE L1 5556 6305 0 6158 166 62 20 chr4 43398542 43399874 -140888788 + L1MC3 LINE L1 6397 7783 -2 183 200 0 0 chr4 43400945 43400975 -140887687 + MER5A DNA MER1_type 1 30 -159 219 69 0 0 chr4 43402029 43402058 -140886604 + (TA)n Simple_repeat Simple_repeat 1 29 0 1530 194 79 9 chr4 43402429 43402758 -140885904 - MLT1A1 LTR MaLR 0 365 14 414 0 0 0 chr4 43403633 43403679 -140884983 + (TC)n Simple_repeat Simple_repeat 2 47 0 387 0 0 0 chr4 43403678 43403721 -140884941 + (TA)n Simple_repeat Simple_repeat 1 43 0 * 1284 173 18 14 chr4 43404075 43404147 -140884515 + L1MA8 LINE L1 6007 6077 -214 2544 77 46 6 chr4 43404147 43404497 -140884165 + THE1B LTR MaLR 1 364 0 1284 173 18 14 chr4 43404497 43404707 -140883955 + L1MA8 LINE L1 6077 6290 -1 290 281 231 29 chr4 43405468 43405652 -140883010 - MIR SINE MIR -6 256 38 592 314 21 5 chr4 43406270 43406470 -140882192 + MIR SINE MIR 23 230 -32 1051 208 131 67 chr4 43407274 43407725 -140880937 + MER74B LTR ERVL 69 548 -74 795 216 216 42 chr4 43408193 43408480 -140880182 + LTR16C LTR ERVL 155 491 0 188 375 0 12 chr4 43409338 43409418 -140879244 + L2 LINE L2 3235 3313 0 462 239 8 62 chr4 43409869 43409999 -140878663 - L2 LINE L2 -1 3312 3190 520 257 20 118 chr4 43411417 43411713 -140876949 + L2 LINE L2 3046 3312 -1 303 383 0 8 chr4 43411761 43411881 -140876781 + MIR SINE MIR 32 150 -112 275 158 0 18 chr4 43412216 43412273 -140876389 + (TA)n Simple_repeat Simple_repeat 1 56 0 325 28 1 0 chr4 43412276 43412332 -140876330 + L1P5 LINE L1 5783 5828 -323 277 316 24 0 chr4 43412332 43412500 -140876162 + (CATATA)n Simple_repeat Simple_repeat 3 174 0 229 221 70 12 chr4 43412533 43412619 -140876043 + L1MC4 LINE L1 6615 6705 -1337 * 13602 160 51 5 chr4 43412601 43413597 -140875065 - L1P5 LINE L1 -360 6507 5559 2174 82 11 11 chr4 43413597 43413939 -140874723 - AluY SINE Alu 0 342 1 13602 160 51 5 chr4 43413939 43414325 -140874337 - L1P5 LINE L1 -1308 5559 5192 213 39 0 0 chr4 43414325 43414351 -140874311 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 13602 160 51 5 chr4 43414351 43419118 -140869544 - L1P5 LINE L1 -1675 5192 3 2561 48 0 13 chr4 43419149 43419460 -140869202 - AluY SINE Alu -4 307 1 2116 109 0 64 chr4 43419781 43420110 -140868552 + AluSx SINE Alu 1 308 -4 1387 303 43 53 chr4 43422325 43422906 -140865756 + MER115 DNA AcHobo 116 690 -3 1932 172 34 3 chr4 43423538 43423892 -140864770 - MLT1A1 LTR MaLR 0 365 1 265 320 55 6 chr4 43425662 43425843 -140862819 - Charlie8 DNA MER1_type -2142 275 86 850 213 16 86 chr4 43426507 43426821 -140861841 + MLT1A1 LTR MaLR 4 295 -70 228 111 0 0 chr4 43427712 43427748 -140860914 + (TAGA)n Simple_repeat Simple_repeat 3 38 0 1451 247 55 13 chr4 43427983 43428460 -140860202 + L1MC4 LINE L1 7102 7598 -444 464 309 102 37 chr4 43428640 43428934 -140859728 - HAL1 LINE L1 -632 1875 1563 1790 116 45 116 chr4 43429815 43430219 -140858443 - THE1C LTR MaLR 0 375 1 2123 130 52 11 chr4 43430225 43430594 -140858068 - THE1C-int LTR MaLR -6 1574 1191 7886 128 34 14 chr4 43430694 43432012 -140856650 - THE1C-int LTR MaLR -234 1346 2 1661 155 64 64 chr4 43432013 43432388 -140856274 - THE1C LTR MaLR 0 375 1 462 304 54 0 chr4 43432388 43432592 -140856070 - Tigger8 DNA MER2_type -301 365 151 188 423 21 0 chr4 43433183 43433280 -140855382 + L2 LINE L2 2828 2926 -387 665 251 87 27 chr4 43433336 43433555 -140855107 - MIR SINE MIR -30 232 1 365 255 64 11 chr4 43433997 43434091 -140854571 - L2 LINE L2 0 3313 3215 1859 136 69 30 chr4 43434871 43435232 -140853430 + THE1C LTR MaLR 1 375 0 186 326 170 7 chr4 43435350 43435491 -140853171 - L2 LINE L2 -527 2787 2624 218 96 58 39 chr4 43435686 43435738 -140852924 + T-rich Low_complexity Low_complexity 2 54 0 471 137 0 0 chr4 43435909 43435982 -140852680 + LTR32 LTR ERVL 15 87 -384 239 59 29 0 chr4 43435963 43435997 -140852665 + LTR32 LTR ERVL 15 49 -422 * 1351 165 13 0 chr4 43435998 43436234 -140852428 + LTR32 LTR ERVL 233 471 0 615 360 54 2 chr4 43437147 43437575 -140851087 + ERVL LTR ERVL 4706 5155 -609 550 259 56 10 chr4 43438003 43438200 -140850462 + LTR16A1 LTR ERVL 251 456 -1 282 308 75 30 chr4 43438330 43438463 -140850199 + MIR SINE MIR 120 258 -4 292 313 138 0 chr4 43439518 43439678 -140848984 + MLT1L LTR MaLR 362 543 -72 541 318 64 17 chr4 43440456 43440689 -140847973 - MIR SINE MIR 0 262 19 2156 72 22 4 chr4 43441584 43441860 -140846802 + AluY SINE Alu 28 308 -3 1687 84 13 4 chr4 43442310 43442549 -140846113 - L1PA11 LINE L1 -4 6170 5930 1749 78 4 0 chr4 43442549 43442779 -140845883 + L1PA11 LINE L1 5665 5895 -279 21 0 0 0 chr4 43443122 43443143 -140845519 + AT_rich Low_complexity Low_complexity 1 21 0 295 247 0 13 chr4 43443282 43443359 -140845303 - MLT1H LTR MaLR -388 161 86 2017 202 103 19 chr4 43443480 43443946 -140844716 + MLT1D LTR MaLR 1 505 0 209 330 149 0 chr4 43445800 43445894 -140842768 + L2 LINE L2 3163 3270 -2 317 269 106 19 chr4 43446462 43446566 -140842096 + MIR SINE MIR 147 259 -3 414 39 0 0 chr4 43447202 43447254 -140841408 + (TAA)n Simple_repeat Simple_repeat 3 54 0 23 54 0 0 chr4 43448073 43448110 -140840552 + AT_rich Low_complexity Low_complexity 1 37 0 214 313 10 52 chr4 43448463 43448559 -140840103 - MER5B DNA MER1_type 0 178 87 257 253 69 0 chr4 43449474 43449561 -140839101 + MER91B DNA MER1_type 1 96 -44 367 328 0 8 chr4 43452650 43452769 -140835893 - 7SK RNA RNA -68 125 8 274 225 147 0 chr4 43452963 43453092 -140835570 - L1ME4a LINE L1 -1 6120 5973 393 265 47 74 chr4 43453165 43453473 -140835189 + MLT1J2 LTR MaLR 102 448 -2 372 335 71 22 chr4 43453492 43453898 -140834764 - L1ME4a LINE L1 -209 5912 5487 13659 142 57 2 chr4 43453898 43454841 -140833821 - Tigger1 DNA MER2_type 0 2418 1528 1787 159 3 38 chr4 43454841 43455155 -140833507 + AluJb SINE Alu 1 303 -9 13659 142 57 2 chr4 43455155 43456501 -140832161 - Tigger1 DNA MER2_type -890 1528 3 204 40 0 0 chr4 43456718 43456743 -140831919 + (GA)n Simple_repeat Simple_repeat 2 26 0 259 172 94 0 chr4 43457064 43457128 -140831534 + L1PA10 LINE L1 6087 6156 -12 3320 67 30 0 chr4 43457918 43458349 -140830313 + MLT2A1 LTR ERVL 1 444 0 239 371 65 24 chr4 43458742 43458912 -140829750 + L2 LINE L2 3096 3272 0 2199 209 18 12 chr4 43459187 43459690 -140828972 + L1MB7 LINE L1 5679 6184 0 190 385 48 29 chr4 43459692 43459796 -140828866 - MIR3 SINE MIR -95 113 8 313 185 0 46 chr4 43461123 43461188 -140827474 + MLT1L LTR MaLR 1 62 -553 489 300 95 14 chr4 43461331 43461541 -140827121 + MLT1L LTR MaLR 305 531 -84 381 43 0 0 chr4 43461964 43462011 -140826651 + (TG)n Simple_repeat Simple_repeat 1 47 0 284 360 58 53 chr4 43462377 43462794 -140825868 - L2 LINE L2 -2 3270 2852 22 0 0 0 chr4 43462940 43462962 -140825700 + AT_rich Low_complexity Low_complexity 1 22 0 8751 192 33 21 chr4 43463584 43465679 -140822983 + L1MA4A LINE L1 1804 3955 -2893 1820 180 10 0 chr4 43465679 43465984 -140822678 + AluJo SINE Alu 3 310 -2 8751 192 33 21 chr4 43465984 43467077 -140821585 + L1MA4A LINE L1 3955 5033 -1815 5450 134 20 4 chr4 43467177 43468327 -140820335 + L1MA4A LINE L1 5700 7005 0 565 259 98 10 chr4 43469693 43469886 -140818776 + MIR SINE MIR 5 214 -48 2080 130 3 0 chr4 43470023 43470315 -140818347 + AluSx SINE Alu 1 293 -19 190 333 0 29 chr4 43470419 43470488 -140818174 - L2 LINE L2 -2 3270 3204 320 196 0 0 chr4 43472749 43472800 -140815862 - Alu SINE Alu -251 51 1 410 210 153 24 chr4 43473881 43474005 -140814657 + HsTC2 DNA Tc2 1 140 -1758 * 1610 235 16 25 chr4 43474002 43474448 -140814214 + HsTC2 DNA Tc2 1283 1900 0 212 321 12 12 chr4 43475654 43475738 -140812924 - L2 LINE L2 0 3313 3230 21 36 0 0 chr4 43477002 43477030 -140811632 + AT_rich Low_complexity Low_complexity 1 28 0 287 300 3 0 chr4 43477341 43477437 -140811225 + L1ME LINE L1 5614 5711 -450 305 172 16 0 chr4 43477997 43478061 -140810601 - L1ME1 LINE L1 -12 6154 6090 281 281 116 16 chr4 43480447 43480568 -140808094 + MIR SINE MIR 9 141 -121 231 304 13 0 chr4 43480569 43480648 -140808014 - MER116 DNA Mariner 0 80 1 322 288 84 63 chr4 43481676 43481867 -140806795 + L2 LINE L2 3115 3309 -4 21 0 0 0 chr4 43481906 43481927 -140806735 + AT_rich Low_complexity Low_complexity 1 21 0 180 343 14 14 chr4 43482564 43482634 -140806028 + MIR SINE MIR 17 86 -122 328 279 18 9 chr4 43483299 43483410 -140805252 - MER20B DNA MER1_type 0 783 672 678 247 85 17 chr4 43483424 43483652 -140805010 + MER46C DNA MER2_type 5 248 -90 336 102 41 0 chr4 43483652 43483701 -140804961 - THE1C LTR MaLR 0 375 325 2019 88 33 0 chr4 43483702 43483976 -140804686 - THE1C LTR MaLR 0 375 93 807 186 23 121 chr4 43484109 43484373 -140804289 + MLT1B LTR MaLR 8 245 -145 518 232 20 66 chr4 43484575 43484726 -140803936 - MER20B DNA MER1_type -302 481 338 268 274 24 12 chr4 43484904 43484988 -140803674 - MER20B DNA MER1_type -693 90 6 2232 74 0 14 chr4 43486156 43486512 -140802150 - AluSc SINE Alu 0 352 1 337 289 118 7 chr4 43486757 43486892 -140801770 - MIR SINE MIR -60 202 53 257 273 55 62 chr4 43487429 43487557 -140801105 - MIR3 SINE MIR -11 197 71 2260 102 0 3 chr4 43489362 43489657 -140799005 - AluSx SINE Alu -18 294 1 345 292 153 36 chr4 43489999 43490333 -140798329 + L2 LINE L2 2127 2493 -821 3238 237 57 10 chr4 43490394 43491629 -140797033 + L1ME1 LINE L1 4269 5597 -569 2215 130 0 0 chr4 43491629 43491937 -140796725 - AluSg SINE Alu -2 308 1 3238 237 57 10 chr4 43491937 43492229 -140796433 + L1ME1 LINE L1 5597 5874 -292 195 385 0 18 chr4 43492668 43492777 -140795885 + MIR SINE MIR 156 262 0 2588 163 29 2 chr4 43493662 43494111 -140794551 - MLT1C LTR MaLR -2 465 5 461 305 34 50 chr4 43496000 43496239 -140792423 - HAL1 LINE L1 -1160 1347 1113 341 95 16 0 chr4 43496461 43496524 -140792138 + (TC)n Simple_repeat Simple_repeat 2 65 0 268 268 0 16 chr4 43496523 43496646 -140792016 + (TATG)n Simple_repeat Simple_repeat 2 122 0 * 1168 236 16 19 chr4 43496748 43497062 -140791600 + L1PA16 LINE L1 2417 2729 -3417 9451 187 27 27 chr4 43497082 43497159 -140791503 + L1PA16 LINE L1 2971 3046 -3120 1818 149 0 40 chr4 43497159 43497461 -140791201 + AluJb SINE Alu 1 290 -22 9451 187 27 27 chr4 43497461 43500585 -140788077 + L1PA16 LINE L1 3046 6166 0 196 253 0 101 chr4 43501287 43501366 -140787296 - MIR SINE MIR -70 192 122 282 222 0 0 chr4 43501487 43501541 -140787121 + MIR SINE MIR 158 211 -51 2084 240 111 72 chr4 43501781 43502958 -140785704 - MER69B DNA AcHobo -1 1225 3 432 318 13 26 chr4 43503948 43504099 -140784563 + MER5B DNA MER1_type 1 149 -29 2261 92 0 10 chr4 43505468 43505773 -140782889 - AluY SINE Alu -9 302 1 1948 172 19 14 chr4 43506136 43506497 -140782165 - MLT1A1 LTR MaLR -2 363 1 376 299 9 28 chr4 43507419 43507526 -140781136 - L2 LINE L2 0 3272 3168 726 284 15 46 chr4 43507531 43507792 -140780870 + Charlie2 DNA MER1_type 2 254 -2608 271 397 30 0 chr4 43507873 43508004 -140780658 - L2 LINE L2 -9 3263 3129 1189 271 45 59 chr4 43508528 43509228 -140779434 - L2 LINE L2 0 3313 2624 525 317 64 40 chr4 43509228 43509556 -140779106 - LTR16C LTR ERVL 0 491 156 2082 285 70 16 chr4 43509752 43510521 -140778141 - L2 LINE L2 -687 2627 1817 989 245 26 40 chr4 43510535 43510808 -140777854 - L2 LINE L2 -2085 1229 961 298 250 0 0 chr4 43510913 43510973 -140777689 - L1MD3 LINE L1 -67 7928 7869 256 307 29 71 chr4 43511134 43511213 -140777449 + MIR SINE MIR 26 98 -164 2211 193 49 28 chr4 43511213 43511720 -140776942 + LTR53 LTR ERVL 2 519 0 256 307 29 71 chr4 43511720 43511780 -140776882 + MIR SINE MIR 98 159 -103 206 253 86 81 chr4 43511915 43512089 -140776573 + L2 LINE L2 3121 3295 -18 210 129 0 0 chr4 43512091 43512122 -140776540 - MIR SINE MIR 0 262 232 1229 270 80 28 chr4 43512143 43512290 -140776372 - MLT1H1 LTR MaLR -4 547 409 2065 197 0 0 chr4 43512290 43512655 -140776007 - MLT1A1 LTR MaLR 0 365 1 1229 270 80 28 chr4 43512655 43512947 -140775715 - MLT1H1 LTR MaLR -142 409 11 201 316 0 53 chr4 43512958 43513034 -140775628 - MIR SINE MIR -111 151 80 432 0 0 0 chr4 43513538 43513586 -140775076 + (TG)n Simple_repeat Simple_repeat 2 49 0 250 282 226 28 chr4 43513822 43514003 -140774659 + MIR SINE MIR 46 262 0 241 279 0 0 chr4 43514079 43514140 -140774522 + L2 LINE L2 3238 3298 -15 240 276 66 21 chr4 43514239 43514363 -140774299 + MIR SINE MIR 13 130 -132 2710 110 0 0 chr4 43514363 43514727 -140773935 - THE1B LTR MaLR 0 364 1 10863 106 8 25 chr4 43514727 43516335 -140772327 - THE1B-int LTR MaLR 0 1580 1 2491 124 6 0 chr4 43516335 43516697 -140771965 - THE1B LTR MaLR 0 364 1 240 276 66 21 chr4 43516697 43516745 -140771917 + MIR SINE MIR 129 242 -20 2201 117 32 32 chr4 43516958 43517333 -140771329 + THE1C LTR MaLR 1 375 0 1046 174 0 46 chr4 43518026 43518201 -140770461 + MER2 DNA MER2_type 1 166 -179 15136 136 57 12 chr4 43518201 43520813 -140767849 + Tigger4(Zombi) DNA MER2_type 2 2731 0 1046 174 0 46 chr4 43520813 43520856 -140767806 + MER2 DNA MER2_type 166 209 -136 267 204 41 0 chr4 43520904 43520953 -140767709 + MER2 DNA MER2_type 280 330 -15 544 92 0 13 chr4 43521068 43521144 -140767518 + MER93b LTR ERV1 1 75 -298 3434 173 78 42 chr4 43521144 43521886 -140766776 - MER21B LTR ERV1 -1 862 94 1128 187 83 0 chr4 43521907 43522148 -140766514 + MER93b LTR ERV1 113 373 0 236 303 40 0 chr4 43522148 43522224 -140766438 - MIR SINE MIR -29 233 155 375 320 98 39 chr4 43522235 43522541 -140766121 + L1ME LINE L1 5360 5683 -438 984 259 9 4 chr4 43522557 43522789 -140765873 + MIR SINE MIR 29 261 -1 237 207 17 112 chr4 43522806 43522922 -140765740 + L1ME LINE L1 5707 5811 -310 1638 63 0 0 chr4 43524058 43524264 -140764398 - L1PA7 LINE L1 -14 6140 5935 232 351 35 35 chr4 43524438 43524609 -140764053 - MIR SINE MIR -1 261 91 5640 80 1 1 chr4 43524729 43525969 -140762693 + L1P3 LINE L1 4580 5819 -335 240 226 97 11 chr4 43526062 43526155 -140762507 - L1ME4a LINE L1 -72 6049 5949 180 329 53 47 chr4 43526276 43526446 -140762216 + MIR SINE MIR 91 261 -1 391 223 97 19 chr4 43526767 43526870 -140761792 + MIR SINE MIR 33 143 -119 550 282 107 48 chr4 43527020 43527229 -140761433 - MLT1L LTR MaLR -165 450 218 2795 89 54 14 chr4 43527229 43527656 -140761006 + MLT2A1 LTR ERVL 1 444 0 550 282 107 48 chr4 43527656 43527737 -140760925 - MLT1L LTR MaLR -397 218 143 1956 305 109 28 chr4 43527971 43529347 -140759315 + L2 LINE L2 1829 3311 -2 197 275 44 44 chr4 43529355 43529446 -140759216 - MIR SINE MIR -93 169 79 315 0 0 0 chr4 43530753 43530788 -140757874 + (A)n Simple_repeat Simple_repeat 1 35 0 192 303 105 13 chr4 43531357 43531433 -140757229 - L2 LINE L2 -1015 2299 2217 444 275 70 112 chr4 43531469 43531727 -140756935 - MIR SINE MIR -14 248 2 1833 233 62 43 chr4 43532828 43533570 -140755092 - L1MC5 LINE L1 -171 7790 7035 195 321 4 4 chr4 43534706 43534792 -140753870 + MIR SINE MIR 56 142 -66 464 279 125 26 chr4 43535761 43536112 -140752550 - L1M4 LINE L1 -2207 3939 3554 12549 198 42 16 chr4 43536411 43539447 -140749215 - L1PA16 LINE L1 -9 6860 3905 243 0 0 0 chr4 43539447 43539474 -140749188 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 12549 198 42 16 chr4 43539474 43539698 -140748964 - L1PA16 LINE L1 -2964 3905 3688 189 0 0 0 chr4 43539698 43539719 -140748943 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 12549 198 42 16 chr4 43539719 43541925 -140746737 - L1PA16 LINE L1 -3181 3688 1254 4878 171 14 2 chr4 43541919 43542772 -140745890 - L1PA16 LINE L1 -5986 863 1 * 483 319 67 38 chr4 43542778 43543092 -140745570 - L1M4 LINE L1 -2945 3201 2879 251 242 15 45 chr4 43544501 43544567 -140744095 + MIR3 SINE MIR 6 69 -139 993 202 30 124 chr4 43544588 43544869 -140743793 + L1MC5 LINE L1 7325 7510 -451 2223 120 13 0 chr4 43544869 43545178 -140743484 + AluSq SINE Alu 1 313 0 993 202 30 124 chr4 43545178 43545559 -140743103 + L1MC5 LINE L1 7510 7925 -36 2261 78 10 0 chr4 43545700 43545994 -140742668 + AluSg SINE Alu 1 297 -13 485 254 87 12 chr4 43546116 43546289 -140742373 + LTR67 LTR ERVL 358 543 -14 449 323 114 9 chr4 43546648 43546868 -140741794 - MIR SINE MIR -18 244 2 2255 78 0 28 chr4 43547038 43547358 -140741304 - AluY SINE Alu 0 311 1 185 317 8 75 chr4 43548227 43548347 -140740315 + L2 LINE L2 3200 3311 -2 420 100 0 0 chr4 43548700 43548760 -140739902 + Alu SINE Alu 232 291 -18 2301 109 29 55 chr4 43549533 43549918 -140738744 + THE1C LTR MaLR 1 375 0 2104 234 4 0 chr4 43549918 43550376 -140738286 - MLT1C LTR MaLR -7 460 1 2755 128 18 87 chr4 43550604 43551205 -140737457 + L1MA7 LINE L1 5732 6291 0 1835 146 6 37 chr4 43552102 43552424 -140736238 + AluSx SINE Alu 1 312 0 820 286 28 0 chr4 43552432 43552649 -140736013 + MIR SINE MIR 24 246 -16 362 276 166 6 chr4 43553753 43553916 -140734746 + MIR SINE MIR 70 258 -4 226 372 0 0 chr4 43554818 43554904 -140733758 - L3 LINE CR1 -157 1420 1335 184 233 23 0 chr4 43554927 43554970 -140733692 - L3b LINE CR1 -2 1581 1538 399 254 0 49 chr4 43555183 43555305 -140733357 - MLT1H LTR MaLR -204 345 230 1620 192 74 42 chr4 43555404 43555836 -140732826 + MLT1C LTR MaLR 22 467 0 184 328 128 15 chr4 43555945 43556140 -140732522 - L3 LINE CR1 -305 1272 1056 325 181 128 53 chr4 43556162 43556295 -140732367 - MLT1L LTR MaLR 0 615 369 793 295 77 0 chr4 43556761 43556995 -140731667 + MIR SINE MIR 11 262 0 236 169 39 65 chr4 43557226 43557303 -140731359 + L1ME4a LINE L1 5981 6055 -66 1742 212 60 50 chr4 43557317 43557817 -140730845 + MLT1D LTR MaLR 1 505 0 270 211 0 13 chr4 43558557 43558633 -140730029 - L1ME4a LINE L1 0 6121 6047 379 288 89 57 chr4 43558680 43558961 -140729701 - L1ME4a LINE L1 -173 5948 5659 432 188 0 0 chr4 43558961 43559046 -140729616 + L1PB4 LINE L1 6070 6154 -2 387 308 102 12 chr4 43559068 43559393 -140729269 - L1ME4a LINE L1 -458 5663 5310 1888 141 52 33 chr4 43559804 43560172 -140728490 + THE1C LTR MaLR 1 375 0 298 267 53 33 chr4 43560725 43560875 -140727787 - MLT1L LTR MaLR -340 275 123 186 322 69 23 chr4 43560974 43561061 -140727601 + L2 LINE L2 3223 3313 0 22 0 0 0 chr4 43561407 43561429 -140727233 + AT_rich Low_complexity Low_complexity 1 22 0 1557 192 178 28 chr4 43561711 43562049 -140726613 + LTR50 LTR ERVL 1 287 -508 2063 151 19 19 chr4 43562049 43562414 -140726248 - MLT1A1 LTR MaLR 0 365 1 1557 192 178 28 chr4 43562414 43562698 -140725964 + LTR50 LTR ERVL 287 768 -27 463 174 0 0 chr4 43563272 43563341 -140725321 + FRAM/FAM SINE Alu 1 65 -111 749 265 96 35 chr4 43563342 43563842 -140724820 - MER41C LTR ERV1 0 557 3 540 161 0 11 chr4 43563842 43563929 -140724733 + FRAM SINE Alu 61 146 -30 309 51 0 0 chr4 43563933 43563972 -140724690 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 201 237 197 0 chr4 43564011 43564087 -140724575 - MIR SINE MIR -35 227 137 2326 98 90 0 chr4 43564141 43564487 -140724175 + MER51B LTR ERV1 1 377 0 371 274 58 89 chr4 43565389 43565681 -140722981 + LTR33A LTR ERVL 3 285 -238 386 183 98 0 chr4 43566395 43566477 -140722185 - MIR SINE MIR -1 261 172 911 267 62 12 chr4 43566479 43566719 -140721943 - MIR SINE MIR -9 253 2 1364 206 38 83 chr4 43567467 43567579 -140721083 - MER63B DNA MER1_type -626 436 321 1995 133 0 16 chr4 43567579 43567888 -140720774 + AluSx SINE Alu 6 309 -3 1364 206 38 83 chr4 43567888 43568222 -140720440 - MER63B DNA MER1_type -741 321 10 198 191 0 0 chr4 43568250 43568297 -140720365 + (CATA)n Simple_repeat Simple_repeat 2 48 0 376 322 119 63 chr4 43570252 43570648 -140718014 - L2 LINE L2 -337 2977 2530 2264 85 0 25 chr4 43570648 43570966 -140717696 + AluSq SINE Alu 1 310 -3 376 322 119 63 chr4 43570966 43571206 -140717456 - L2 LINE L2 -784 2530 2305 1426 245 81 26 chr4 43571893 43572350 -140716312 + MLT1J LTR MaLR 5 486 -25 2072 111 33 23 chr4 43573179 43573486 -140715176 + AluSx SINE Alu 3 312 0 2283 113 3 3 chr4 43574533 43574844 -140713818 - AluSx SINE Alu -1 311 1 303 270 141 87 chr4 43574971 43575156 -140713506 - MER91A DNA MER1_type -1 195 1 21 0 0 0 chr4 43575627 43575648 -140713014 + AT_rich Low_complexity Low_complexity 1 21 0 2727 126 94 97 chr4 43575912 43576627 -140712035 + Tigger3b DNA MER2_type 1 713 -518 41843 43 2 1 chr4 43576629 43582795 -140705867 + L1PA4 LINE L1 1 6176 0 366 171 0 0 chr4 43583161 43583231 -140705431 + T-rich Low_complexity Low_complexity 1 70 0 233 227 0 0 chr4 43583645 43583689 -140704973 + (CA)n Simple_repeat Simple_repeat 2 45 0 519 258 113 48 chr4 43584339 43584568 -140704094 + MIR SINE MIR 18 261 -1 534 307 191 48 chr4 43584675 43585451 -140703211 + L2 LINE L2 1614 2500 -814 761 193 25 109 chr4 43585485 43585699 -140702963 + MER20 DNA MER1_type 2 196 -23 1627 156 50 102 chr4 43585699 43586083 -140702579 + THE1B LTR MaLR 1 364 0 761 193 25 109 chr4 43586083 43586106 -140702556 + MER20 DNA MER1_type 196 219 0 387 286 98 79 chr4 43586110 43586581 -140702081 + L2 LINE L2 2530 3009 -263 988 187 56 0 chr4 43587700 43587898 -140700764 - MER3 DNA MER1_type 0 209 1 1513 300 92 28 chr4 43587919 43588569 -140700093 - MER115 DNA AcHobo 0 693 2 1981 302 157 23 chr4 43588591 43589925 -140698737 + L2 LINE L2 1227 2739 -575 3609 212 133 9 chr4 43589947 43590879 -140697783 + L1PA13 LINE L1 81 1128 -5659 5977 104 6 10 chr4 43590904 43592179 -140696483 + L1PA13 LINE L1 4892 6158 -5 219 324 14 0 chr4 43592254 43592328 -140696334 - L2 LINE L2 -750 2564 2490 * 508 336 199 10 chr4 43592327 43592795 -140695867 + L2 LINE L2 2750 3300 -13 2480 81 0 0 chr4 43594182 43594492 -140694170 + AluY SINE Alu 1 310 -1 384 285 15 65 chr4 43594976 43595192 -140693470 + L1MDa LINE L1 1257 1470 -5060 190 104 21 42 chr4 43595198 43595246 -140693416 + (TATG)n Simple_repeat Simple_repeat 2 48 0 429 149 0 81 chr4 43595397 43595484 -140693178 + MLT1C LTR MaLR 1 80 -285 257 257 101 0 chr4 43595614 43595723 -140692939 + HAL1 LINE L1 1443 1562 -945 * 1671 234 32 82 chr4 43595713 43596338 -140692324 + L1MC/D LINE L1 4465 5120 -1097 2430 146 44 5 chr4 43596338 43596750 -140691912 + MSTA LTR MaLR 1 428 0 7747 161 50 39 chr4 43596752 43598313 -140690349 + MSTA-int LTR MaLR 3 1580 0 2441 133 44 7 chr4 43598313 43598726 -140689936 + MSTA LTR MaLR 1 428 0 1671 234 32 82 chr4 43598726 43599166 -140689496 + L1MC/D LINE L1 5119 5474 -743 839 141 0 15 chr4 43599167 43599302 -140689360 + FLAM_C SINE Alu 1 133 0 21 36 0 0 chr4 43599302 43599330 -140689332 + AT_rich Low_complexity Low_complexity 1 28 0 1523 208 78 40 chr4 43599450 43599849 -140688813 + MLT1C LTR MaLR 53 466 -1 392 267 170 0 chr4 43600061 43600196 -140688466 - MIR SINE MIR -21 241 84 374 350 57 24 chr4 43600200 43600569 -140688093 + L1M4 LINE L1 3749 4129 -2017 2385 71 3 13 chr4 43600614 43600922 -140687740 + AluY SINE Alu 1 305 -6 655 323 104 10 chr4 43601074 43601477 -140687185 + L1M4 LINE L1 4398 4838 -1308 329 318 54 0 chr4 43601647 43601889 -140686773 + L1M4 LINE L1 5068 5322 -824 24 0 0 0 chr4 43603897 43603921 -140684741 + AT_rich Low_complexity Low_complexity 1 24 0 585 243 72 18 chr4 43606399 43606621 -140682041 + L1MC5 LINE L1 7668 7901 -60 7475 40 0 0 chr4 43606630 43608211 -140680451 - L1PA5 LINE L1 -3 6151 4570 10658 38 1 1 chr4 43608211 43609519 -140679143 + L1PA5 LINE L1 3243 4550 -1596 852 156 7 0 chr4 43609544 43609685 -140678977 + LTR47B LTR ERVL 301 442 -1 193 170 57 38 chr4 43609730 43609783 -140678879 + L2 LINE L2 3147 3200 -113 287 391 20 10 chr4 43610125 43610192 -140678470 - MLT1G-int LTR MaLR -888 483 418 2111 130 141 5 chr4 43610192 43610568 -140678094 + MSTA LTR MaLR 2 428 0 287 391 20 10 chr4 43610568 43610697 -140677965 - MLT1G-int LTR MaLR -953 418 285 251 242 15 0 chr4 43610859 43610925 -140677737 - MLT1G LTR MaLR -7 583 517 1086 355 29 12 chr4 43610985 43611464 -140677198 - MERVL LTR ERVL -1318 4336 3850 2449 163 26 5 chr4 43611565 43611982 -140676680 - MSTB LTR MaLR 0 426 1 296 306 62 47 chr4 43612051 43612244 -140676418 - MERVL LTR ERVL -3543 1942 1747 7917 248 41 34 chr4 43612536 43615215 -140673447 + L1PA12 LINE L1 32 2692 -4892 2011 166 54 54 chr4 43615215 43615643 -140673019 - MSTA LTR MaLR 0 428 1 7917 248 41 34 chr4 43615643 43616555 -140672107 + L1PA12 LINE L1 2692 3596 -3988 318 67 0 0 chr4 43616555 43616600 -140672062 + (TG)n Simple_repeat Simple_repeat 2 46 0 312 91 0 0 chr4 43616600 43616644 -140672018 + (CATA)n Simple_repeat Simple_repeat 2 45 0 7917 248 41 34 chr4 43616644 43617580 -140671082 + L1PA12 LINE L1 3595 4848 -2736 844 258 9 9 chr4 43617841 43618054 -140670608 - MER69 DNA AcHobo -939 287 75 198 349 128 0 chr4 43618509 43618618 -140670044 - L2 LINE L2 -2 3311 3189 22 0 0 0 chr4 43618694 43618716 -140669946 + AT_rich Low_complexity Low_complexity 1 22 0 358 332 37 80 chr4 43619274 43619651 -140669011 + L2 LINE L2 2896 3256 -16 21 0 0 0 chr4 43619834 43619855 -140668807 + AT_rich Low_complexity Low_complexity 1 21 0 1075 210 66 68 chr4 43619997 43620363 -140668299 + MLT1A1 LTR MaLR 1 365 0 433 317 152 6 chr4 43620831 43620995 -140667667 - MER5A DNA MER1_type 0 189 2 218 279 82 49 chr4 43622031 43622153 -140666509 + MIR SINE MIR 91 216 -46 549 280 109 0 chr4 43622166 43622341 -140666321 - MIR SINE MIR 0 262 69 21 82 0 0 chr4 43624106 43624155 -140664507 + AT_rich Low_complexity Low_complexity 1 49 0 240 86 0 0 chr4 43624434 43624469 -140664193 + (TG)n Simple_repeat Simple_repeat 2 36 0 1807 163 46 30 chr4 43624574 43624943 -140663719 + THE1C LTR MaLR 1 375 0 352 287 55 25 chr4 43625004 43625206 -140663456 - L1MC4 LINE L1 -1036 7006 6799 22 35 0 0 chr4 43625294 43625323 -140663339 + AT_rich Low_complexity Low_complexity 1 29 0 2523 109 0 11 chr4 43625525 43625892 -140662770 - L1PB1 LINE L1 -7 6144 5782 302 298 12 0 chr4 43625893 43625977 -140662685 + L1MC4 LINE L1 6614 6698 -1344 200 135 0 27 chr4 43626001 43626038 -140662624 + (TA)n Simple_repeat Simple_repeat 2 37 0 260 209 0 15 chr4 43626065 43626132 -140662530 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 236 247 0 0 chr4 43626136 43626209 -140662453 + L1MCa LINE L1 1995 2067 -4359 231 154 0 64 chr4 43626225 43626303 -140662359 + (CATATA)n Simple_repeat Simple_repeat 3 75 0 472 292 73 36 chr4 43626528 43626712 -140661950 + MIR SINE MIR 26 216 -46 693 204 167 0 chr4 43626712 43626874 -140661788 - MER5A DNA MER1_type 0 189 1 278 258 104 121 chr4 43627785 43628025 -140660637 + MIR SINE MIR 3 238 -24 260 225 113 120 chr4 43628482 43628624 -140660038 + MIR SINE MIR 1 142 -66 622 277 70 9 chr4 43629547 43629760 -140658902 + MIR SINE MIR 1 226 -36 924 194 12 0 chr4 43630152 43630317 -140658345 + AluSg/x SINE Alu 133 299 -13 301 262 79 8 chr4 43630692 43630818 -140657844 + MIR SINE MIR 128 262 0 423 297 105 14 chr4 43631435 43631803 -140656859 - L1ME3A LINE L1 -294 5876 5457 2036 78 9 96 chr4 43631964 43632298 -140656364 - AluSc SINE Alu 0 309 5 5709 175 22 13 chr4 43633821 43634933 -140653729 + L1P LINE L1 3111 4233 -1913 22 0 0 0 chr4 43635699 43635721 -140652941 + AT_rich Low_complexity Low_complexity 1 22 0 255 130 26 130 chr4 43635960 43636037 -140652625 + MLT1L LTR MaLR 7 75 -540 454 84 24 60 chr4 43636057 43636110 -140652552 - MADE1 DNA Mariner 0 80 30 2789 192 32 68 chr4 43636110 43636825 -140651837 + LTR8 LTR ERV1 3 691 0 454 84 24 60 chr4 43636825 43636854 -140651808 - MADE1 DNA Mariner -50 30 1 672 299 57 7 chr4 43636860 43637141 -140651521 + MLT1L LTR MaLR 97 391 -224 2566 157 14 0 chr4 43638092 43638520 -140650142 - MER57B LTR ERV1 0 434 1 1507 111 128 0 chr4 43638521 43638755 -140649907 - MER57B-int LTR ERV1 -2 7535 7272 781 114 24 8 chr4 43638755 43638878 -140649784 - LTR54B LTR ERV1 -371 127 3 11938 109 42 3 chr4 43638878 43640652 -140648010 - MER57B-int LTR ERV1 -388 7149 5307 5746 139 56 27 chr4 43640643 43642308 -140646354 - MER57B-int LTR ERV1 -1720 4273 2186 * 267 157 59 0 chr4 43642304 43642355 -140646307 - MER57B-int LTR ERV1 -3726 2220 2167 * 898 125 54 8 chr4 43642331 43642498 -140646164 - MER57B-int LTR ERV1 -3932 2014 1505 * 1759 185 92 3 chr4 43642489 43642857 -140645805 - MER57B-int LTR ERV1 -4175 1771 1371 1315 154 5 0 chr4 43642847 43643055 -140645607 - MER57B-int LTR ERV1 -5779 1758 1550 * 3405 128 61 0 chr4 43643038 43643577 -140645085 - MER57B-int LTR ERV1 -5087 859 288 * 4250 130 18 5 chr4 43643574 43644237 -140644425 - MER57B-int LTR ERV1 -6865 672 1 2758 134 7 2 chr4 43644237 43644669 -140643993 - MER57B LTR ERV1 0 434 1 900 197 27 11 chr4 43645063 43645246 -140643416 + MER5A DNA MER1_type 4 189 0 254 316 53 18 chr4 43645275 43645389 -140643273 + MIR SINE MIR 3 120 -142 856 225 98 41 chr4 43645624 43645868 -140642794 - MIR SINE MIR 0 262 5 2082 201 181 2 chr4 43647770 43648412 -140640250 + L1MC4 LINE L1 7281 8037 -5 27 29 0 0 chr4 43650398 43650432 -140638230 + AT_rich Low_complexity Low_complexity 1 34 0 194 311 113 9 chr4 43650515 43650621 -140638041 + L2 LINE L2 2623 2739 -575 401 241 28 28 chr4 43651039 43651184 -140637478 + MLT1J LTR MaLR 3 147 -364 450 230 155 29 chr4 43651275 43651449 -140637213 + MLT1J LTR MaLR 300 495 -16 1690 156 7 0 chr4 43651846 43652116 -140636546 + AluSx SINE Alu 5 276 -36 780 251 16 5 chr4 43652167 43652354 -140636308 - MIR SINE MIR -67 195 7 292 328 25 25 chr4 43652359 43652478 -140636184 - MIR3 SINE MIR -87 121 3 2303 110 0 0 chr4 43653852 43654151 -140634511 - AluSc SINE Alu -6 303 5 754 238 17 6 chr4 43704151 43704323 -140584339 + MLT1D LTR MaLR 332 505 0 1993 102 30 36 chr4 43704357 43704660 -140584002 + AluSc SINE Alu 1 301 -8 474 282 15 30 chr4 43704786 43704917 -140583745 + MIR SINE MIR 45 173 -89 209 355 27 0 chr4 43705979 43706089 -140582573 - MIR SINE MIR -72 190 78 302 175 0 0 chr4 43706090 43706147 -140582515 - MLT2B1 LTR ERVL 0 520 464 454 245 0 0 chr4 43706230 43706328 -140582334 - MLT2B1 LTR ERVL -44 476 379 27792 52 3 6 chr4 43706428 43710863 -140577799 + L1PA3 LINE L1 1733 6154 -1 332 276 94 8 chr4 43710863 43710990 -140577672 - LTR33A LTR ERVL -24 499 362 385 239 72 94 chr4 43711096 43711276 -140577386 - LTR33A LTR ERVL -341 182 7 989 215 39 0 chr4 43711664 43711869 -140576793 - MER58A DNA MER1_type -5 219 7 589 270 162 5 chr4 43711968 43712153 -140576509 + MIR SINE MIR 28 241 -21 267 79 0 0 chr4 43712493 43712531 -140576131 + (TA)n Simple_repeat Simple_repeat 1 38 0 294 276 115 45 chr4 43712813 43712969 -140575693 - MIR3 SINE MIR -40 168 2 204 67 0 0 chr4 43713326 43713356 -140575306 + (TA)n Simple_repeat Simple_repeat 1 30 0 27 29 0 0 chr4 43713456 43713490 -140575172 + AT_rich Low_complexity Low_complexity 1 34 0 344 261 0 22 chr4 43713490 43713582 -140575080 + L1MC4 LINE L1 6614 6703 -1339 261 0 0 0 chr4 43713582 43713611 -140575051 + (TA)n Simple_repeat Simple_repeat 1 29 0 1262 107 6 0 chr4 43713618 43713786 -140574876 + AluSq SINE Alu 1 169 -144 203 165 33 11 chr4 43713820 43713911 -140574751 + (TA)n Simple_repeat Simple_repeat 1 93 0 206 118 0 0 chr4 43713919 43713953 -140574709 + (CA)n Simple_repeat Simple_repeat 2 35 0 922 40 0 151 chr4 43714310 43714462 -140574200 + AluY SINE Alu 163 291 -20 234 220 0 0 chr4 43715843 43715902 -140572760 + (TG)n Simple_repeat Simple_repeat 2 60 0 22 0 0 0 chr4 43716171 43716193 -140572469 + AT_rich Low_complexity Low_complexity 1 22 0 582 254 16 38 chr4 43716967 43717152 -140571510 - MER112 DNA MER1_type 0 260 80 2052 158 2 56 chr4 43717168 43717224 -140571438 + MLT1B LTR MaLR 1 58 -332 2069 133 42 33 chr4 43717224 43717585 -140571077 + THE1B LTR MaLR 1 364 0 2052 158 2 56 chr4 43717585 43717940 -140570722 + MLT1B LTR MaLR 58 390 0 1961 101 0 0 chr4 43718998 43719274 -140569388 + L1PA13 LINE L1 5877 6152 -11 27 29 0 0 chr4 43719569 43719603 -140569059 + AT_rich Low_complexity Low_complexity 1 34 0 286 83 104 0 chr4 43719978 43720026 -140568636 - MLT2B2 LTR ERVL -462 53 1 2224 111 29 14 chr4 43720177 43720528 -140568134 - L1P4 LINE L1 -456 5712 5357 724 285 35 18 chr4 43720815 43721043 -140567619 - LTR16A1 LTR ERVL -213 244 13 1439 253 129 21 chr4 43721776 43722250 -140566412 + MLT1G1 LTR MaLR 19 543 -52 404 309 67 26 chr4 43722428 43722622 -140566040 - MIR SINE MIR 0 262 61 377 312 186 21 chr4 43722661 43722940 -140565722 - L2 LINE L2 -15 3298 2974 314 273 45 53 chr4 43723046 43723178 -140565484 + MIR SINE MIR 20 150 -112 24 0 0 0 chr4 43723265 43723289 -140565373 + AT_rich Low_complexity Low_complexity 1 24 0 364 247 22 11 chr4 43723740 43723829 -140564833 + MIR SINE MIR 27 116 -92 244 302 127 75 chr4 43724090 43724302 -140564360 + MIR SINE MIR 7 229 -33 291 327 47 0 chr4 43725324 43725431 -140563231 - MER91C DNA MER1_type -12 128 17 329 339 82 92 chr4 43725455 43726014 -140562648 + L2 LINE L2 2694 3232 -40 4417 138 27 7 chr4 43726054 43726798 -140561864 - L1M1 LINE L1 -4933 2632 1874 231 180 66 66 chr4 43726809 43726870 -140561792 + LTR43 LTR ERV1 526 586 -16 3292 187 41 28 chr4 43726886 43727999 -140560663 + L1MA9 LINE L1 4823 5959 -353 547 264 23 17 chr4 43728164 43728338 -140560324 - MER5B DNA MER1_type -3 175 1 410 213 35 92 chr4 43729051 43729192 -140559470 - MIR SINE MIR -70 192 60 3232 106 2 0 chr4 43729231 43729695 -140558967 - L1PA10 LINE L1 -4 6164 5700 425 351 63 25 chr4 43729712 43730031 -140558631 + MER102b DNA MER1_type 6 336 -5 24 32 0 0 chr4 43731072 43731103 -140557559 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr4 43731856 43731884 -140556778 + AT_rich Low_complexity Low_complexity 1 28 0 237 259 0 0 chr4 43732596 43732654 -140556008 + (TAA)n Simple_repeat Simple_repeat 2 59 0 752 259 132 4 chr4 43732726 43732954 -140555708 + MIR SINE MIR 5 261 -1 287 280 136 25 chr4 43732949 43733067 -140555595 - MIR SINE MIR -112 150 20 * 232 337 50 20 chr4 43733082 43733183 -140555479 + L2 LINE L2 3210 3313 0 204 310 0 0 chr4 43734113 43734184 -140554478 + GA-rich Low_complexity Low_complexity 1 71 0 2054 182 14 19 chr4 43735063 43735802 -140552860 - L1MC/D LINE L1 -743 5403 4787 2416 278 53 19 chr4 43735850 43736702 -140551960 - L1MEc LINE L1 -5385 1011 131 307 314 16 83 chr4 43736964 43737134 -140551528 - MLT1J LTR MaLR -141 474 215 25 0 0 0 chr4 43737515 43737540 -140551122 + AT_rich Low_complexity Low_complexity 1 25 0 1536 163 68 102 chr4 43737704 43738147 -140550515 - MSTA LTR MaLR 0 428 1 9050 144 20 38 chr4 43738147 43739753 -140548909 - MSTA-int LTR MaLR 0 1580 3 1667 168 125 33 chr4 43739755 43740147 -140548515 - MSTA LTR MaLR 0 428 1 993 200 15 5 chr4 43740309 43740504 -140548158 - AluJb SINE Alu -34 278 82 359 310 52 61 chr4 43740983 43741196 -140547466 - MIR SINE MIR -34 228 18 264 315 72 0 chr4 43742184 43742295 -140546367 + MIR SINE MIR 139 257 -5 3730 129 20 10 chr4 43742404 43743001 -140545661 - LTR26 LTR ERV1 0 603 1 510 137 63 0 chr4 43743312 43743407 -140545255 - MER49 LTR ERV1 -685 238 138 1192 166 0 5 chr4 43743407 43743600 -140545062 - LOR1-int LTR ERV1 -1100 7020 6829 1100 119 38 136 chr4 43743621 43743857 -140544805 - LOR1-int LTR ERV1 -4122 3998 3786 484 267 20 22 chr4 43744838 43745028 -140543634 - L1ME3A LINE L1 -5 6165 5985 5065 162 22 17 chr4 43745069 43746049 -140542613 - L1MA8 LINE L1 0 7710 6726 3904 198 18 14 chr4 43746157 43747027 -140541635 - L1MA8 LINE L1 -1075 6490 5617 2009 141 16 56 chr4 43747027 43747404 -140541258 + THE1C LTR MaLR 1 362 -13 5236 173 63 30 chr4 43747405 43748678 -140539984 - L1MA8 LINE L1 -1947 5618 4304 3411 242 25 53 chr4 43748829 43749576 -140539086 - L1MA8 LINE L1 -4291 3274 2508 7814 16 1 0 chr4 43749576 43751198 -140537464 - L1PA2 LINE L1 -1 6154 4532 3411 242 25 53 chr4 43751198 43751350 -140537312 - L1MA8 LINE L1 -5057 2508 2353 2106 144 0 0 chr4 43751350 43751656 -140537006 - AluSx SINE Alu -6 306 1 3411 242 25 53 chr4 43751656 43752071 -140536591 - L1MA8 LINE L1 -5212 2353 1996 1742 251 96 55 chr4 43752114 43752751 -140535911 - L1MA8 LINE L1 -6361 1128 466 32 0 0 0 chr4 43753147 43753179 -140535483 + AT_rich Low_complexity Low_complexity 1 32 0 192 245 0 19 chr4 43753950 43754003 -140534659 + MIR3 SINE MIR 107 158 -50 312 27 0 0 chr4 43754517 43754554 -140534108 + (TG)n Simple_repeat Simple_repeat 2 38 0 453 0 78 0 chr4 43754722 43754799 -140533863 + (TA)n Simple_repeat Simple_repeat 1 83 0 267 31 0 0 chr4 43754798 43754830 -140533832 + (GA)n Simple_repeat Simple_repeat 2 33 0 * 1432 187 12 12 chr4 43754830 43755076 -140533586 - AluJo SINE Alu -39 273 28 21 0 0 0 chr4 43755874 43755895 -140532767 + AT_rich Low_complexity Low_complexity 1 21 0 1032 205 114 24 chr4 43756653 43756907 -140531755 - MLT1B LTR MaLR 0 390 114 30 45 0 0 chr4 43757695 43757739 -140530923 + AT_rich Low_complexity Low_complexity 1 44 0 183 156 0 0 chr4 43757755 43757787 -140530875 + (CATATA)n Simple_repeat Simple_repeat 5 36 0 228 135 39 39 chr4 43758033 43758085 -140530577 - MER106B DNA MER1_type -113 946 895 * 357 154 0 103 chr4 43758080 43758158 -140530504 - MER106A DNA MER1_type -163 73 4 223 229 14 43 chr4 43759361 43759431 -140529231 + CT-rich Low_complexity Low_complexity 1 68 0 2236 158 0 6 chr4 43759724 43760079 -140528583 - MER47A DNA MER2_type 0 366 14 221 294 25 157 chr4 43760873 43761070 -140527592 - L2 LINE L2 -112 3160 2990 2444 70 20 0 chr4 43763037 43763338 -140525324 + AluY SINE Alu 1 307 -4 2582 192 18 3 chr4 43763339 43763907 -140524755 + L1 LINE L1 3088 3663 -2483 907 224 113 39 chr4 43763904 43764118 -140524544 - L1MC4 LINE L1 -1212 6830 6581 * 1385 191 0 84 chr4 43764118 43764438 -140524224 - AluJo SINE Alu -19 293 1 907 224 113 39 chr4 43764438 43764558 -140524104 - L1MC4 LINE L1 -1461 6581 6471 228 269 143 34 chr4 43765047 43765166 -140523496 - MIR3 SINE MIR -8 200 69 2107 125 3 0 chr4 43765354 43765642 -140523020 - AluSp SINE Alu -24 289 1 430 236 89 16 chr4 43765710 43765833 -140522829 - MIR SINE MIR -124 138 7 691 200 89 0 chr4 43766852 43766987 -140521675 + Tigger3(Golem) DNA MER2_type 1 147 -2882 340 250 0 0 chr4 43766968 43767052 -140521610 + Tigger3(Golem) DNA MER2_type 2269 2352 -677 * 1126 188 23 9 chr4 43767068 43767286 -140521376 + AluJo SINE Alu 87 307 -5 3372 134 73 8 chr4 43767291 43767890 -140520772 + Tigger3(Golem) DNA MER2_type 2390 3027 -2 25 0 0 0 chr4 43768701 43768726 -140519936 + AT_rich Low_complexity Low_complexity 1 25 0 252 280 13 40 chr4 43768962 43769037 -140519625 + L2 LINE L2 3233 3305 -8 2357 94 0 0 chr4 43769812 43770109 -140518553 - AluSx SINE Alu -10 302 6 358 327 147 6 chr4 43770291 43770447 -140518215 + L2 LINE L2 3095 3272 0 1803 108 97 0 chr4 43770529 43770821 -140517841 + AluSq SINE Alu 1 317 0 257 315 82 131 chr4 43770887 43771145 -140517517 - L2 LINE L2 -14 3258 3024 1999 121 24 3 chr4 43771145 43771435 -140517227 + AluSc SINE Alu 5 300 -9 257 315 82 131 chr4 43771435 43771566 -140517096 - L2 LINE L2 -248 3024 2888 23 0 0 0 chr4 43771713 43771736 -140516926 + AT_rich Low_complexity Low_complexity 1 23 0 251 224 17 0 chr4 43772256 43772314 -140516348 + MIR SINE MIR 183 241 -21 504 262 37 45 chr4 43772673 43772917 -140515745 - LTR38 LTR ERV1 -26 530 289 2760 160 48 14 chr4 43772921 43773619 -140515043 + LTR1B LTR ERV1 1 826 0 1339 116 39 138 chr4 43773622 43773983 -140514679 - LTR38B LTR ERV1 -285 325 1 14363 155 3 10 chr4 43774666 43776976 -140511686 + HERVI LTR ERV1 5466 7758 -27 3691 65 18 12 chr4 43777005 43777515 -140511147 + LTR10D LTR ERV1 1 513 0 1835 193 9 6 chr4 43777687 43778024 -140510638 - MLT1A1 LTR MaLR 0 365 28 1760 136 8 84 chr4 43778072 43778446 -140510216 - MER4A LTR ERV1 0 664 261 486 144 89 0 chr4 43778446 43778536 -140510126 - MER4A LTR ERV1 -566 98 1 15567 122 57 36 chr4 43778543 43780705 -140507957 - MER4A-int LTR ERV1 -1 6597 4481 2053 131 0 0 chr4 43780705 43781013 -140507649 + AluSg SINE Alu 5 312 0 15567 122 57 36 chr4 43781013 43781825 -140506837 - MER4A-int LTR ERV1 -2117 4481 3687 2438 82 3 0 chr4 43781825 43782131 -140506531 + AluY SINE Alu 2 308 -3 15567 122 57 36 chr4 43782131 43782358 -140506304 - MER4A-int LTR ERV1 -2911 3687 1862 1229 175 98 0 chr4 43782358 43782592 -140506070 + LTR8 LTR ERV1 1 257 -434 3964 87 62 45 chr4 43782592 43783305 -140505357 - MER4A-int LTR ERV1 -4103 2495 1771 1495 91 12 169 chr4 43783303 43783669 -140504993 - MER4A-int LTR ERV1 -4266 1284 503 * 2799 100 136 64 chr4 43783637 43784123 -140504539 - MER4A-int LTR ERV1 -5997 601 68 6205 58 12 10 chr4 43784123 43784902 -140503760 + LTR17 LTR ERV1 1 780 0 2799 100 136 64 chr4 43784902 43784976 -140503686 - MER4A-int LTR ERV1 -6530 68 1 1351 161 27 0 chr4 43784979 43785202 -140503460 - MER4A LTR ERV1 0 664 436 3841 177 43 7 chr4 43785203 43786405 -140502257 - L1P4 LINE L1 -515 5651 4406 343 328 78 14 chr4 43786705 43786877 -140501785 + MIR SINE MIR 13 191 -61 275 221 33 25 chr4 43787559 43787648 -140501014 - MIR SINE MIR -71 191 103 797 264 73 12 chr4 43787673 43788162 -140500500 - L1M4 LINE L1 -1462 4684 4160 2619 208 12 2 chr4 43788171 43788670 -140499992 + MER82 DNA MER2_type 1 504 -149 244 193 11 45 chr4 43788874 43788962 -140499700 + L1MC4 LINE L1 6608 6692 -1350 213 196 0 0 chr4 43788969 43789020 -140499642 + (TATG)n Simple_repeat Simple_repeat 1 51 0 588 206 174 28 chr4 43790098 43790345 -140498317 - L1M4 LINE L1 -801 5345 5063 * 1396 241 58 44 chr4 43790328 43790829 -140497833 + L1ME1 LINE L1 5643 6150 -16 225 281 16 0 chr4 43791034 43791101 -140497561 + (TATATG)n Simple_repeat Simple_repeat 1 68 0 2472 82 0 0 chr4 43793092 43793398 -140495264 + AluY SINE Alu 1 306 -5 190 313 107 36 chr4 43793746 43793858 -140494804 - MIR SINE MIR -66 142 23 27 0 0 0 chr4 43794152 43794179 -140494483 + AT_rich Low_complexity Low_complexity 1 27 0 183 42 0 0 chr4 43794626 43794650 -140494012 + (TG)n Simple_repeat Simple_repeat 1 24 0 15143 66 1 3 chr4 43794863 43796903 -140491759 + L1P LINE L1 1 2035 -4111 39 50 0 0 chr4 43797057 43797117 -140491545 + AT_rich Low_complexity Low_complexity 1 60 0 23 33 0 0 chr4 43797363 43797393 -140491269 + AT_rich Low_complexity Low_complexity 1 30 0 2657 178 27 25 chr4 43797711 43798268 -140490394 + MER74A LTR ERVL 1 558 0 336 331 36 14 chr4 43798339 43798478 -140490184 - MIR SINE MIR -95 167 26 2489 180 42 31 chr4 43800216 43800475 -140488187 + MER44D DNA MER2_type 1 256 -2231 2226 110 7 0 chr4 43800475 43800774 -140487888 + AluSc SINE Alu 5 305 -4 2489 180 42 31 chr4 43800774 43801058 -140487604 + MER44D DNA MER2_type 256 605 0 1229 146 5 41 chr4 43801193 43801412 -140487250 - AluSg/x SINE Alu -5 307 97 3561 185 28 86 chr4 43801907 43802935 -140485727 - LTR5 LTR ERVK 0 969 1 1479 195 136 16 chr4 43803122 43803491 -140485171 + MSTA LTR MaLR 1 413 -15 737 62 0 0 chr4 43803491 43803587 -140485075 + L1PA4 LINE L1 6057 6152 -3 9361 139 14 35 chr4 43803625 43805236 -140483426 + MSTA-int LTR MaLR 3 1580 0 1861 143 135 23 chr4 43805236 43805621 -140483041 + MSTA LTR MaLR 1 428 0 220 358 12 0 chr4 43806097 43806178 -140482484 - L2 LINE L2 -5 3267 3186 8669 61 2 2 chr4 43806193 43807264 -140481398 + MER11C LTR ERVK 1 1071 0 784 321 97 52 chr4 43807517 43808031 -140480631 - L2 LINE L2 -366 2948 2412 203 268 52 31 chr4 43808858 43808955 -140479707 - MIR SINE MIR -13 249 151 306 279 34 101 chr4 43809007 43809186 -140479476 + MIR SINE MIR 47 213 -49 22 0 0 0 chr4 43809619 43809641 -140479021 + AT_rich Low_complexity Low_complexity 1 22 0 1725 189 9 9 chr4 43809753 43810113 -140478549 - MLT1A1 LTR MaLR 0 365 1 228 194 16 16 chr4 43810117 43810179 -140478483 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 472 287 40 49 chr4 43810367 43810409 -140478253 - MLT1J LTR MaLR -268 243 202 2250 92 0 3 chr4 43810409 43810692 -140477970 + AluSq SINE Alu 17 298 -15 472 287 40 49 chr4 43810692 43810872 -140477790 - MLT1J LTR MaLR -309 202 23 541 252 107 0 chr4 43811123 43811282 -140477380 - MIR SINE MIR -30 232 57 676 274 140 25 chr4 43811620 43811941 -140476721 + LTR33 LTR ERVL 162 519 -2 632 274 81 0 chr4 43812845 43813042 -140475620 - MIR SINE MIR -2 260 48 23 33 0 0 chr4 43813042 43813072 -140475590 + AT_rich Low_complexity Low_complexity 1 30 0 2971 209 94 5 chr4 43813120 43813915 -140474747 + L1PA14 LINE L1 5291 6156 -5 239 192 39 0 chr4 43814666 43814718 -140473944 - L2 LINE L2 -11 3261 3208 322 395 8 41 chr4 43815196 43815439 -140473223 - L2 LINE L2 -159 3113 2879 199 263 0 35 chr4 43815486 43815543 -140473119 - L2 LINE L2 -496 2818 2764 25 0 0 0 chr4 43816022 43816047 -140472615 + AT_rich Low_complexity Low_complexity 1 25 0 227 190 17 0 chr4 43816048 43816106 -140472556 + (TA)n Simple_repeat Simple_repeat 1 59 0 296 301 45 45 chr4 43816827 43816899 -140471763 + L2 LINE L2 3158 3229 -84 285 75 0 0 chr4 43816899 43816939 -140471723 + (TG)n Simple_repeat Simple_repeat 1 40 0 296 301 45 45 chr4 43816939 43817022 -140471640 + L2 LINE L2 3228 3313 0 348 336 37 65 chr4 43817607 43817835 -140470827 + MIR SINE MIR 1 222 -40 230 283 97 80 chr4 43819382 43819682 -140468980 + L2 LINE L2 2998 3302 -11 318 341 11 0 chr4 43819716 43819807 -140468855 - L2 LINE L2 -14 3258 3167 308 287 74 25 chr4 43819963 43820085 -140468577 + MIR SINE MIR 12 139 -123 331 274 43 8 chr4 43821261 43821378 -140467284 + MER94 DNA DNA 12 132 -2 329 211 99 0 chr4 43821793 43821864 -140466798 - L2 LINE L2 0 3313 3236 345 302 54 27 chr4 43822150 43822299 -140466363 + MIR3 SINE MIR 31 183 -25 307 323 43 49 chr4 43822460 43822624 -140466038 - L1M4 LINE L1 -1331 4815 4653 202 269 0 0 chr4 43822740 43822792 -140465870 - MIR SINE MIR -114 148 97 679 300 53 21 chr4 43823099 43823342 -140465320 - MIR SINE MIR -10 252 2 379 331 43 0 chr4 43823897 43824036 -140464626 + L2 LINE L2 3128 3272 0 22 0 0 0 chr4 43824104 43824126 -140464536 + AT_rich Low_complexity Low_complexity 1 22 0 443 217 87 17 chr4 43825570 43825685 -140462977 + L2 LINE L2 3191 3313 0 2526 47 0 0 chr4 43825968 43826266 -140462396 + AluY SINE Alu 1 298 -13 233 234 131 65 chr4 43826983 43827090 -140461572 + MIR SINE MIR 70 183 -79 460 214 10 0 chr4 43827432 43827530 -140461132 - MIR SINE MIR 0 262 164 2178 115 3 14 chr4 43828103 43828399 -140460263 + AluSx SINE Alu 3 295 -17 694 142 15 0 chr4 43828493 43828627 -140460035 - MER53 DNA DNA -3 186 51 204 125 0 0 chr4 43828728 43828760 -140459902 + (CATATA)n Simple_repeat Simple_repeat 2 33 0 200 433 48 0 chr4 43829073 43829260 -140459402 - L2 LINE L2 -225 3047 2852 228 182 0 0 chr4 43829541 43829585 -140459077 + A-rich Low_complexity Low_complexity 1 44 0 2202 102 10 0 chr4 43829705 43830009 -140458653 - AluSq SINE Alu -6 307 1 23 0 0 0 chr4 43830109 43830132 -140458530 + AT_rich Low_complexity Low_complexity 1 23 0 361 210 94 17 chr4 43830166 43830347 -140458315 + MER113 DNA MER1_type? 17 211 -310 604 236 69 64 chr4 43831325 43831528 -140457134 + MIR SINE MIR 31 234 -28 1687 182 30 57 chr4 43831617 43832018 -140456644 + MLT1B LTR MaLR 1 390 0 497 206 52 7 chr4 43833094 43833230 -140455432 - MER63 DNA MER1_type 0 1062 921 900 223 47 39 chr4 43833238 43833597 -140455065 - Charlie2a DNA MER1_type -1108 1754 1393 15496 160 43 40 chr4 43833598 43835313 -140453349 + L1M1 LINE L1 17 1725 -5840 704 79 0 0 chr4 43835313 43835414 -140453248 + AluY SINE Alu 211 311 0 15496 160 43 40 chr4 43835414 43836466 -140452196 + L1M1 LINE L1 1725 2898 -4667 369 0 0 0 chr4 43836466 43836507 -140452155 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 15496 160 43 40 chr4 43836507 43836860 -140451802 + L1M1 LINE L1 2898 3248 -4317 206 274 16 0 chr4 43837473 43837535 -140451127 + (TG)n Simple_repeat Simple_repeat 2 64 0 21 0 0 0 chr4 43838783 43838804 -140449858 + AT_rich Low_complexity Low_complexity 1 21 0 327 231 0 0 chr4 43838882 43838947 -140449715 - L2 LINE L2 0 3313 3249 252 0 0 0 chr4 43839338 43839366 -140449296 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 251 0 0 0 chr4 43839370 43839402 -140449260 - L1PA14 LINE L1 -24 6137 6106 2089 111 4 0 chr4 43839812 43840115 -140448547 + AluY SINE Alu 1 304 0 330 361 42 37 chr4 43840154 43840370 -140448292 - L2 LINE L2 -179 3093 2877 385 331 6 17 chr4 43840609 43840784 -140447878 + L1ME LINE L1 256 428 -5642 807 256 84 34 chr4 43840961 43841780 -140446882 + L1ME LINE L1 3953 4885 -1195 585 223 0 23 chr4 43841816 43841946 -140446716 + MER20 DNA MER1_type 93 219 0 1099 199 87 46 chr4 43842037 43842534 -140446128 + L1ME LINE L1 5069 5599 -499 2093 137 22 28 chr4 43842535 43842899 -140445763 + THE1B LTR MaLR 3 364 0 11086 98 34 3 chr4 43842899 43844432 -140444230 + THE1B-int LTR MaLR 1 1580 0 2005 150 19 25 chr4 43844432 43844798 -140443864 + THE1B LTR MaLR 1 364 0 29 28 0 0 chr4 43845052 43845088 -140443574 + AT_rich Low_complexity Low_complexity 1 36 0 189 267 35 78 chr4 43845316 43845432 -140443230 + MIR SINE MIR 102 212 -50 203 242 99 77 chr4 43845575 43845666 -140442996 - MIR3 SINE MIR -28 180 88 675 292 65 0 chr4 43848588 43848804 -140439858 + MIR SINE MIR 3 232 -30 796 336 69 24 chr4 43848993 43849620 -140439042 + ERVL LTR ERVL 4716 5370 -394 6849 231 39 36 chr4 43850212 43851881 -140436781 + L1 LINE L1 2251 3957 -2189 1122 156 0 0 chr4 43851881 43852048 -140436614 + AluSg/x SINE Alu 131 297 -15 6849 231 39 36 chr4 43852048 43852763 -140435899 + L1 LINE L1 3957 4668 -1478 429 88 0 0 chr4 43852757 43852825 -140435837 + L1MA1 LINE L1 5296 5363 -939 * 2388 101 6 37 chr4 43852883 43853238 -140435424 - THE1A LTR MaLR -11 344 1 11191 103 7 14 chr4 43853238 43854829 -140433833 - THE1A-int LTR MaLR 0 1580 1 2711 66 20 0 chr4 43854829 43855177 -140433485 - THE1A LTR MaLR 0 355 1 6629 98 2 4 chr4 43855177 43856122 -140432540 + L1MA1 LINE L1 5360 6302 0 31 92 0 0 chr4 43856215 43856302 -140432360 + AT_rich Low_complexity Low_complexity 1 87 0 1423 217 78 52 chr4 43856336 43856760 -140431902 - MLT1C LTR MaLR -32 435 1 1390 297 104 15 chr4 43856813 43857776 -140430886 - Charlie2a DNA MER1_type -1698 1164 65 193 245 0 0 chr4 43858376 43858425 -140430237 + L2 LINE L2 3262 3310 -3 550 287 62 39 chr4 43858802 43859109 -140429553 + L2 LINE L2 2326 2639 -675 427 280 36 80 chr4 43859123 43859348 -140429314 + L2 LINE L2 3075 3289 -24 2045 140 36 0 chr4 43859357 43859715 -140428947 + L1MA4 LINE L1 5927 6297 -3 378 365 121 30 chr4 43859771 43860406 -140428256 - L2 LINE L2 -550 2764 2072 276 217 72 24 chr4 43860733 43860816 -140427846 + MLT1H LTR MaLR 1 87 -462 3820 158 34 16 chr4 43861267 43862012 -140426650 - L1MA10 LINE L1 -7 6327 5570 801 178 44 11 chr4 43862012 43862192 -140426470 + L1M3 LINE L1 5044 5229 -917 2847 121 30 5 chr4 43862203 43862641 -140426021 - L1PA14 LINE L1 -2 6159 5711 492 82 0 0 chr4 43862737 43862810 -140425852 - L1PA7 LINE L1 -3 6151 6079 1404 167 15 62 chr4 43862810 43863216 -140425446 + L1M3 LINE L1 5216 5583 -585 299 293 90 8 chr4 43863378 43863511 -140425151 - MARNA DNA Mariner -45 541 398 297 356 58 6 chr4 43863390 43863564 -140425098 + MARNA DNA Mariner 58 240 -346 * 1872 183 91 57 chr4 43863610 43864103 -140424559 + MER67D LTR ERV1 1 510 -4 1662 165 8 0 chr4 43864264 43864530 -140424132 + AluSx SINE Alu 1 268 -44 2380 89 0 0 chr4 43865957 43866261 -140422401 + AluSg SINE Alu 1 304 -6 395 206 14 0 chr4 43866437 43866510 -140422152 - MER5A DNA MER1_type -83 106 33 200 324 49 49 chr4 43866526 43866628 -140422034 + MIR3 SINE MIR 12 113 -95 596 287 58 27 chr4 43867494 43867717 -140420945 + MIR SINE MIR 31 260 -2 2204 172 31 17 chr4 43868516 43868935 -140419727 + MSTB LTR MaLR 1 425 -1 223 316 13 13 chr4 43869136 43869212 -140419450 + L2 LINE L2 3234 3309 -4 23 68 0 0 chr4 43869493 43869537 -140419125 + AT_rich Low_complexity Low_complexity 1 44 0 1928 166 14 6 chr4 43869642 43869997 -140418665 - MER46B DNA MER2_type 0 236 4 1249 25 13 6 chr4 43870904 43871061 -140417601 - L1PA4 LINE L1 -2 6153 5996 2275 103 0 6 chr4 43874231 43874543 -140414119 + AluY SINE Alu 1 310 -1 304 325 97 13 chr4 43875010 43875164 -140413498 - MLT2E LTR ERVL -420 208 42 234 0 0 0 chr4 43876646 43876672 -140411990 + (CA)n Simple_repeat Simple_repeat 1 26 0 1473 211 116 6 chr4 43877410 43877765 -140410897 + MSTD LTR MaLR 1 394 -2 2008 134 5 102 chr4 43877810 43878119 -140410543 + MER47A DNA MER2_type 1 264 -2059 1650 171 35 3 chr4 43878119 43878405 -140410257 - AluJb SINE Alu -17 295 1 2008 134 5 102 chr4 43878405 43878499 -140410163 + MER47A DNA MER2_type 264 365 -1 5734 269 62 24 chr4 43878499 43880123 -140408539 + MSTD-int LTR MaLR 38 1722 -13 1817 209 29 13 chr4 43880124 43880501 -140408161 + MSTD LTR MaLR 11 393 -3 25 31 0 0 chr4 43880678 43880710 -140407952 + AT_rich Low_complexity Low_complexity 1 32 0 1257 271 22 35 chr4 43880955 43881409 -140407253 - L1ME2 LINE L1 -2 6162 5715 3208 243 113 9 chr4 43881494 43882478 -140406184 - L1MC4 LINE L1 -143 7899 6814 * 19627 178 30 15 chr4 43882476 43886618 -140402044 + L1M1 LINE L1 17 4219 -3346 822 189 5 28 chr4 43986637 43986693 -140301969 + (TCCA)n Simple_repeat Simple_repeat 1 57 -599 2341 62 17 0 chr4 43986693 43986983 -140301679 - AluY SINE Alu -16 295 1 822 189 5 28 chr4 43986983 43987309 -140301353 + (TCCA)n Simple_repeat Simple_repeat 57 656 0 252 219 16 16 chr4 43988925 43988989 -140299673 + A-rich Low_complexity Low_complexity 3 66 0 388 322 78 41 chr4 43989560 43990106 -140298556 + L1M1 LINE L1 2255 4752 -1231 204 316 0 40 chr4 43990782 43990858 -140297804 + MIR SINE MIR 74 146 -62 210 311 33 0 chr4 43991466 43991617 -140297045 + (CATCC)n Simple_repeat Simple_repeat 4 159 0 * 218 186 0 0 chr4 43991610 43991653 -140297009 + (TCCA)n Simple_repeat Simple_repeat 3 45 0 233 312 129 49 chr4 43991863 43992126 -140296536 + L2 LINE L2 2985 3268 -4 446 289 78 20 chr4 43993406 43993610 -140295052 - Charlie5 DNA MER1_type 0 2622 2407 21 95 0 0 chr4 43995922 43995985 -140292677 + GC_rich Low_complexity Low_complexity 1 63 0 1939 210 115 6 chr4 43998971 43999475 -140289187 - MLT1F1 LTR MaLR -7 560 2 366 302 0 16 chr4 43999679 43999805 -140288857 + L1MC4a LINE L1 5815 5938 -1870 254 353 64 16 chr4 44000659 44000846 -140287816 + L2 LINE L2 2993 3188 -84 299 289 124 21 chr4 44000972 44001166 -140287496 + MIR SINE MIR 35 248 -14 265 193 18 105 chr4 44001623 44001737 -140286925 + MIR SINE MIR 18 121 -87 212 163 0 20 chr4 44010201 44010250 -140278412 + (CAT)n Simple_repeat Simple_repeat 3 50 0 961 142 9 5 chr4 44010266 44010652 -140278010 + (TCCA)n Simple_repeat Simple_repeat 1 564 0 676 99 37 25 chr4 44010639 44010801 -140277861 + (CAGTC)n Simple_repeat Simple_repeat 4 167 0 192 330 117 0 chr4 44011966 44012069 -140276593 - MIR SINE MIR -78 130 16 313 327 30 0 chr4 44012208 44012309 -140276353 - MIR SINE MIR -80 182 79 211 284 108 14 chr4 44012814 44012888 -140275774 + MIR SINE MIR 52 132 -130 294 238 48 0 chr4 44012892 44012976 -140275686 + MLT1H LTR MaLR 84 171 -378 244 268 16 55 chr4 44013238 44013365 -140275297 + MIR SINE MIR 104 225 -37 256 77 39 19 chr4 44014519 44014571 -140274091 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 366 23 0 0 chr4 44014580 44014623 -140274039 + (TCCA)n Simple_repeat Simple_repeat 3 45 0 489 276 59 20 chr4 44014858 44015061 -140273601 + MLT1K LTR MaLR 93 303 -285 667 284 40 5 chr4 44015592 44015793 -140272869 + MLT1K LTR MaLR 366 573 -15 297 310 133 13 chr4 44016165 44016323 -140272339 + MIR SINE MIR 8 184 -78 248 241 65 0 chr4 44016413 44016521 -140272141 + (TA)n Simple_repeat Simple_repeat 2 116 0 415 156 0 21 chr4 44016524 44016620 -140272042 + (TCCA)n Simple_repeat Simple_repeat 3 96 0 318 325 3 26 chr4 44016927 44017173 -140271489 + GA-rich Low_complexity Low_complexity 1 240 0 501 239 44 19 chr4 44018480 44018639 -140270023 - MLT1K LTR MaLR -2 586 424 369 261 39 8 chr4 44018648 44018778 -140269884 - MLT1K LTR MaLR -454 134 1 414 340 62 10 chr4 44021099 44021293 -140267369 - MIR SINE MIR -14 248 45 2282 100 3 0 chr4 44021760 44022070 -140266592 - AluSx SINE Alu -1 311 1 201 39 0 0 chr4 44022660 44022686 -140265976 + (CTGGGG)n Simple_repeat Simple_repeat 4 29 0 247 209 143 77 chr4 44022817 44022908 -140265754 + MIR SINE MIR 93 190 -18 222 118 0 0 chr4 44023380 44023414 -140265248 + (CCCA)n Simple_repeat Simple_repeat 4 37 0 323 315 22 0 chr4 44023520 44023612 -140265050 - MIR SINE MIR -70 138 45 466 310 83 27 chr4 44024445 44024684 -140263978 + MIR SINE MIR 10 256 -6 198 297 108 0 chr4 44024884 44024958 -140263704 + MIR3 SINE MIR 112 193 -15 288 217 85 104 chr4 44025903 44026009 -140262653 - MIR SINE MIR -77 131 28 262 122 20 0 chr4 44027062 44027111 -140261551 + L2 LINE L2 3005 3054 -218 228 422 0 0 chr4 44027398 44027533 -140261129 + (CA)n Simple_repeat Simple_repeat 1 135 0 235 304 108 2 chr4 44028047 44028163 -140260499 - MIR SINE MIR -27 181 56 238 296 96 0 chr4 44029598 44029713 -140258949 - MIR3 SINE MIR -68 140 15 433 237 71 4 chr4 44030191 44030363 -140258299 - MIR SINE MIR -59 149 16 273 213 120 28 chr4 44032472 44032580 -140256082 - Charlie8 DNA MER1_type -2255 162 45 191 205 0 0 chr4 44032968 44033007 -140255655 - MIR SINE MIR -143 119 81 196 256 21 0 chr4 44033007 44033073 -140255589 - MIR SINE MIR -85 123 54 192 273 0 0 chr4 44033855 44033943 -140254719 + (CCTG)n Simple_repeat Simple_repeat 1 88 0 685 277 90 9 chr4 44034193 44034525 -140254137 + MLT1C LTR MaLR 4 362 -105 319 316 61 0 chr4 44035481 44035595 -140253067 + L1MCa LINE L1 2268 2388 -4038 533 163 34 22 chr4 44035630 44035808 -140252854 + GA-rich Low_complexity Low_complexity 1 180 0 261 146 0 0 chr4 44040573 44040621 -140248041 + (CACG)n Simple_repeat Simple_repeat 2 49 0 231 292 94 42 chr4 44042268 44042364 -140246298 + MIR3 SINE MIR 88 188 -20 562 238 35 0 chr4 44042712 44042855 -140245807 - MLT1G1 LTR MaLR 0 595 448 253 226 0 0 chr4 44042870 44042923 -140245739 - MLT1G1 LTR MaLR -314 281 229 318 172 0 43 chr4 44044796 44044816 -140243846 + GA-rich Low_complexity Low_complexity 1 20 -69 2044 105 19 38 chr4 44044816 44045130 -140243532 + AluSx SINE Alu 1 308 -4 318 172 0 43 chr4 44045130 44045202 -140243460 + GA-rich Low_complexity Low_complexity 20 89 0 396 340 27 0 chr4 44045949 44046096 -140242566 + MIR SINE MIR 56 206 -56 213 196 0 22 chr4 44047026 44047072 -140241590 - MIR SINE MIR -133 75 31 469 333 6 0 chr4 44047074 44047233 -140241429 + MIR SINE MIR 16 175 -87 385 254 75 15 chr4 44047856 44047990 -140240672 + L2 LINE L2 2963 3104 -168 322 281 6 84 chr4 44048216 44048383 -140240279 + MER45A DNA AcHobo 16 169 -9 201 148 0 74 chr4 44050108 44050162 -140238500 + (CGGGG)n Simple_repeat Simple_repeat 1 50 0 463 354 60 46 chr4 44050826 44051393 -140237269 - HAL1 LINE L1 -1205 1302 875 21 0 0 0 chr4 44051532 44051553 -140237109 + GC_rich Low_complexity Low_complexity 1 21 0 246 194 0 42 chr4 44051656 44051728 -140236934 + G-rich Low_complexity Low_complexity 1 69 0 55 48 0 0 chr4 44051728 44051811 -140236851 + GC_rich Low_complexity Low_complexity 1 83 0 23 78 0 0 chr4 44051883 44051934 -140236728 + GC_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr4 44051967 44051989 -140236673 + GC_rich Low_complexity Low_complexity 1 22 0 369 0 0 0 chr4 44053309 44053350 -140235312 + (TG)n Simple_repeat Simple_repeat 1 41 0 24 0 0 0 chr4 44053684 44053708 -140234954 + GC_rich Low_complexity Low_complexity 1 24 0 198 342 13 13 chr4 44055566 44055645 -140233017 + MIR SINE MIR 93 171 -91 700 176 0 46 chr4 44055835 44055966 -140232696 - FLAM_C SINE Alu -8 125 1 407 252 162 0 chr4 44056218 44056329 -140232333 - MIR SINE MIR -96 166 38 286 212 0 0 chr4 44056406 44056482 -140232180 + MIR3 SINE MIR 103 179 -29 197 88 0 29 chr4 44056931 44056965 -140231697 - MIR SINE MIR -117 145 113 533 256 63 22 chr4 44057464 44057661 -140231001 + MIR SINE MIR 1 203 -59 455 207 0 9 chr4 44057687 44057803 -140230859 + CT-rich Low_complexity Low_complexity 1 115 0 454 189 19 0 chr4 44057857 44057963 -140230699 + C-rich Low_complexity Low_complexity 6 113 0 212 339 0 0 chr4 44060088 44060153 -140228509 - MIR SINE MIR -118 144 80 268 330 9 28 chr4 44060326 44060435 -140228227 + MIR SINE MIR 42 148 -114 342 253 92 0 chr4 44060472 44060559 -140228103 + MIR SINE MIR 89 183 -79 266 364 106 8 chr4 44061166 44061298 -140227364 - MIR SINE MIR -12 250 106 234 264 36 36 chr4 44061454 44061564 -140227098 + MIR3 SINE MIR 11 120 -88 254 283 0 0 chr4 44063118 44063178 -140225484 + MIR SINE MIR 110 169 -93 386 288 27 18 chr4 44063178 44063289 -140225373 + L2 LINE L2 3185 3296 -17 329 240 139 8 chr4 44063976 44064105 -140224557 - MIR SINE MIR -88 174 29 216 258 30 0 chr4 44064514 44064580 -140224082 + MIR SINE MIR 119 186 -76 203 114 29 0 chr4 44064995 44065030 -140223632 + MIR SINE MIR 110 145 -117 200 329 82 0 chr4 44065148 44065221 -140223441 + MIR3 SINE MIR 102 180 -28 242 273 47 17 chr4 44065666 44065838 -140222824 + (CCCG)n Simple_repeat Simple_repeat 4 180 0 218 318 6 37 chr4 44066106 44066221 -140222441 + MIR SINE MIR 10 120 -88 186 317 50 20 chr4 44067052 44067153 -140221509 + MIR3 SINE MIR 85 188 -20 190 291 55 0 chr4 44067649 44067704 -140220958 + L2 LINE L2 3240 3297 -16 214 240 20 0 chr4 44068003 44068053 -140220609 - L2 LINE L2 -8 3264 3214 233 367 7 54 chr4 44069159 44069306 -140219356 + MIR SINE MIR 6 145 -117 2304 86 0 0 chr4 44069831 44070133 -140218529 - AluSc SINE Alu -7 302 1 300 165 101 0 chr4 44070144 44070223 -140218439 - L1MB4 LINE L1 0 6180 6094 308 306 0 0 chr4 44073819 44073891 -140214771 - L2 LINE L2 -10 3303 3232 400 217 0 0 chr4 44074963 44075032 -140213630 + AluS SINE Alu 1 69 -244 * 850 225 0 0 chr4 44075028 44075203 -140213459 + AluJo/FRAM SINE Alu 134 308 0 246 298 49 53 chr4 44076009 44076065 -140212597 + L1MEc LINE L1 1506 1561 -4835 2133 113 0 10 chr4 44076065 44076375 -140212287 - AluSp SINE Alu -6 307 1 246 298 49 53 chr4 44076375 44076563 -140212099 + L1MEc LINE L1 1561 1749 -4647 633 211 108 124 chr4 44077248 44077516 -140211146 + MER66A LTR ERV1 97 224 -254 2201 105 3 0 chr4 44077516 44077820 -140210842 + AluSx SINE Alu 1 305 -7 633 211 108 124 chr4 44077820 44078071 -140210591 + MER66A LTR ERV1 224 477 -1 192 121 61 0 chr4 44078704 44078737 -140209925 + MER5A DNA MER1_type 48 82 -107 180 286 119 16 chr4 44080498 44080624 -140208038 - L2 LINE L2 -9 3263 3125 1491 206 3 7 chr4 44082966 44083257 -140205405 + AluJo SINE Alu 1 290 -22 893 191 32 55 chr4 44083268 44083488 -140205174 + AluJb SINE Alu 85 299 -13 309 239 6 37 chr4 44084644 44084807 -140203855 + G-rich Low_complexity Low_complexity 2 159 0 25 75 0 0 chr4 44085111 44085164 -140203498 + GC_rich Low_complexity Low_complexity 1 53 0 45 45 0 0 chr4 44085178 44085244 -140203418 + GC_rich Low_complexity Low_complexity 1 66 0 43 47 0 0 chr4 44085297 44085361 -140203301 + GC_rich Low_complexity Low_complexity 1 64 0 48 93 0 0 chr4 44085507 44085646 -140203016 + GC_rich Low_complexity Low_complexity 1 139 0 29 0 0 0 chr4 44085797 44085826 -140202836 + GC_rich Low_complexity Low_complexity 1 29 0 790 204 13 6 chr4 44090295 44090452 -140198210 - AluJo SINE Alu -154 158 1 709 172 25 0 chr4 44090592 44090714 -140197948 + FLAM_A SINE Alu 10 134 -8 295 307 36 7 chr4 44090729 44090869 -140197793 + MER20 DNA MER1_type 64 207 -12 431 252 57 24 chr4 44092900 44093023 -140195639 - MIR3 SINE MIR -76 132 6 263 360 0 0 chr4 44093393 44093468 -140195194 - MIR SINE MIR -80 182 108 1554 104 9 5 chr4 44096224 44096446 -140192216 - AluSg/x SINE Alu -14 296 74 323 304 11 11 chr4 44097894 44098059 -140190603 + C-rich Low_complexity Low_complexity 1 280 0 242 336 16 16 chr4 44098244 44098366 -140190296 + L2 LINE L2 2932 3053 -219 222 276 0 0 chr4 44098522 44098580 -140190082 + (TGAG)n Simple_repeat Simple_repeat 3 60 0 212 240 25 50 chr4 44099568 44099660 -140189002 + MIR SINE MIR 63 149 -63 338 289 31 0 chr4 44100105 44100202 -140188460 - MIR SINE MIR -96 166 67 2074 128 0 3 chr4 44103577 44103874 -140184788 - AluJo SINE Alu -12 300 5 265 244 64 0 chr4 44105049 44105127 -140183535 - MIR SINE MIR -147 115 33 2516 43 3 0 chr4 44108187 44108488 -140180174 - AluY SINE Alu -8 303 2 253 135 0 0 chr4 44108488 44108525 -140180137 - L2 LINE L2 -12 3260 3224 496 228 6 6 chr4 44110221 44110388 -140178274 + CT-rich Low_complexity Low_complexity 1 167 0 335 279 0 0 chr4 44112097 44112176 -140176486 + MIR SINE MIR 77 155 -107 229 318 12 31 chr4 44114973 44115094 -140173568 - MIR SINE MIR -63 145 55 270 0 0 0 chr4 44115394 44115424 -140173238 + (CCCCAG)n Simple_repeat Simple_repeat 6 35 0 285 191 44 0 chr4 44117435 44117503 -140171159 - L2 LINE L2 -19 3294 3224 229 215 93 28 chr4 44117838 44117945 -140170717 - MIR SINE MIR -62 146 33 217 239 0 0 chr4 44120041 44120087 -140168575 - MIR SINE MIR -74 134 89 298 0 48 0 chr4 44120206 44120248 -140168414 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 22 80 0 0 chr4 44120465 44120515 -140168147 + GC_rich Low_complexity Low_complexity 1 50 0 233 125 25 0 chr4 44120833 44120873 -140167789 + L1MC/D LINE L1 5620 5660 -582 254 369 49 0 chr4 44125257 44125379 -140163283 + MIR SINE MIR 4 131 -131 180 308 77 39 chr4 44125459 44125563 -140163099 - MIR3 SINE MIR -89 119 12 192 235 39 0 chr4 44126028 44126079 -140162583 + MIR SINE MIR 88 140 -68 2197 119 0 0 chr4 44126148 44126451 -140162211 + AluSx SINE Alu 1 303 -9 180 154 19 115 chr4 44126970 44127022 -140161640 + MIR SINE MIR 86 132 -76 230 320 152 0 chr4 44128289 44128414 -140160248 - MIR3 SINE MIR -58 150 7 227 289 77 29 chr4 44128889 44128993 -140159669 + MIR SINE MIR 40 148 -60 193 177 63 38 chr4 44129437 44129516 -140159146 + MIR SINE MIR 50 130 -78 384 250 188 0 chr4 44129858 44129986 -140158676 + MER91A DNA MER1_type 1 152 -44 187 298 144 0 chr4 44131017 44131121 -140157541 + MIR SINE MIR 31 149 -113 401 246 60 134 chr4 44131825 44132179 -140156483 - MLT1D LTR MaLR -47 343 8 304 289 97 0 chr4 44132866 44132980 -140155682 - L2 LINE L2 -220 3052 2928 259 281 90 90 chr4 44234065 44234232 -140054430 - MLT1K LTR MaLR -415 173 7 531 306 68 19 chr4 44234353 44234559 -140054103 - MIR SINE MIR -32 230 15 363 44 0 0 chr4 44235242 44235287 -140053375 + (CA)n Simple_repeat Simple_repeat 2 46 0 944 190 4 18 chr4 44235290 44235516 -140053146 + L1P LINE L1 5141 5363 -783 192 40 0 0 chr4 44235525 44235550 -140053112 + (CA)n Simple_repeat Simple_repeat 1 25 0 351 162 54 0 chr4 44235954 44236028 -140052634 + MIR SINE MIR 129 206 -56 450 143 0 14 chr4 44236032 44236125 -140052537 - AluSg/x SINE Alu 0 304 213 311 111 74 0 chr4 44237114 44237168 -140051494 + MER53 DNA DNA 131 188 -1 672 188 0 38 chr4 44237171 44237304 -140051358 + MLT1E1 LTR MaLR 134 261 -393 1281 217 14 11 chr4 44237374 44237650 -140051012 + MLT1E1 LTR MaLR 378 654 0 2450 90 0 0 chr4 44238055 44238389 -140050273 - L1PA7 LINE L1 0 6154 5821 363 282 45 9 chr4 44238399 44238509 -140050153 - MIR SINE MIR -87 175 62 22 56 0 0 chr4 44239172 44239208 -140049454 + AT_rich Low_complexity Low_complexity 1 36 0 219 125 0 0 chr4 44239411 44239451 -140049211 + (TG)n Simple_repeat Simple_repeat 1 40 0 180 152 0 0 chr4 44239588 44239621 -140049041 + A-rich Low_complexity Low_complexity 3 35 0 192 340 78 48 chr4 44239654 44239757 -140048905 + L2 LINE L2 3164 3269 -3 30 0 0 0 chr4 44241827 44241857 -140046805 + AT_rich Low_complexity Low_complexity 1 30 0 747 327 16 4 chr4 44242849 44243097 -140045565 + MIR SINE MIR 12 262 0 2374 88 0 0 chr4 44243730 44244038 -140044624 - AluY SINE Alu -1 310 3 1329 203 62 31 chr4 44244849 44245169 -140043493 + MLT1B LTR MaLR 61 390 0 364 335 71 13 chr4 44245265 44245420 -140043242 - L2 LINE L2 -8 3264 3101 327 324 57 68 chr4 44245808 44245933 -140042729 - MLT1K LTR MaLR -67 521 396 632 64 11 0 chr4 44245933 44246027 -140042635 + (TCTA)n Simple_repeat Simple_repeat 2 96 0 327 324 57 68 chr4 44246027 44246268 -140042394 - MLT1K LTR MaLR -192 396 159 2504 58 0 3 chr4 44246446 44246756 -140041906 - AluY SINE Alu -2 309 1 2800 220 26 5 chr4 44246905 44247701 -140040961 + L1PA16 LINE L1 4657 5471 -695 2723 51 0 11 chr4 44247701 44248047 -140040615 + L1PA6 LINE L1 5801 6147 -7 3732 149 32 30 chr4 44248047 44248731 -140039931 + L1PA16 LINE L1 5469 6165 -1 182 152 30 0 chr4 44250552 44250585 -140038077 + L2 LINE L2 3258 3291 -22 195 301 82 27 chr4 44251062 44251135 -140037527 + L2 LINE L2 3219 3295 -18 559 311 149 32 chr4 44253095 44253680 -140034982 + HAL1 LINE L1 426 1078 -1429 291 239 125 0 chr4 44253681 44253769 -140034893 + L1 LINE L1 4904 5002 -1144 9134 184 58 13 chr4 44253790 44254242 -140034420 - L1MA4 LINE L1 -6 7713 7283 2410 64 0 0 chr4 44254242 44254539 -140034123 - AluY SINE Alu -14 297 1 9134 184 58 13 chr4 44254539 44256939 -140031723 - L1MA4 LINE L1 -436 7283 4729 3317 142 81 0 chr4 44256942 44257563 -140031099 - L1MA4 LINE L1 -4436 3129 2459 * 4400 168 18 20 chr4 44257551 44258038 -140030624 + L1PA16 LINE L1 4983 5470 -696 252 0 0 0 chr4 44258038 44258066 -140030596 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 4400 168 18 20 chr4 44258066 44258668 -140029994 + L1PA16 LINE L1 5470 6072 -94 483 260 76 29 chr4 44258725 44259040 -140029622 + HAL1 LINE L1 1121 1450 -1057 274 248 248 0 chr4 44259064 44259177 -140029485 + HAL1 LINE L1 1681 1821 -686 325 297 75 75 chr4 44262185 44262491 -140026171 - HAL1 LINE L1 -356 2151 1846 652 335 28 22 chr4 44262549 44262910 -140025752 - HAL1 LINE L1 -788 1719 1357 468 272 38 24 chr4 44263039 44263209 -140025453 - MER52A LTR ERV1 -395 1232 449 * 799 206 92 163 chr4 44263190 44263527 -140025135 - LTR28 LTR ERV1 -785 970 1 9395 120 10 9 chr4 44263527 44264914 -140023748 - LTR28-int LTR ERV1 0 7091 5703 613 196 103 127 chr4 44264998 44265485 -140023177 - MER52A LTR ERV1 -23 970 1 460 270 157 100 chr4 44265564 44266474 -140022188 - HAL1 LINE L1 -1286 1221 260 5520 158 13 2 chr4 44267194 44268139 -140020523 - L1MA3 LINE L1 -8 6297 5343 222 37 0 0 chr4 44268139 44268166 -140020496 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2139 189 7 111 chr4 44268166 44268615 -140020047 - L1PA8 LINE L1 -17 6155 5754 * 12563 184 37 65 chr4 44268590 44269009 -140019653 - L1 LINE L1 -753 6812 6383 2143 114 20 0 chr4 44269009 44269307 -140019355 + AluSx SINE Alu 1 304 -8 12563 184 37 65 chr4 44269307 44272411 -140016251 - L1 LINE L1 -1182 6383 3386 462 114 0 0 chr4 44272774 44272844 -140015818 + (TA)n Simple_repeat Simple_repeat 2 71 0 22 0 0 0 chr4 44274535 44274557 -140014105 + AT_rich Low_complexity Low_complexity 1 22 0 235 358 60 8 chr4 44274612 44274746 -140013916 - MIR SINE MIR -3 259 119 694 247 55 22 chr4 44275401 44275583 -140013079 - MIR SINE MIR -11 251 64 320 346 10 0 chr4 44275581 44275685 -140012977 + MIR3 SINE MIR 81 185 -23 * 216 293 134 12 chr4 44275903 44275985 -140012677 + L2 LINE L2 3221 3312 -1 913 33 0 0 chr4 44277245 44277367 -140011295 - L1PA2 LINE L1 -2807 3339 3218 17434 22 0 0 chr4 44277367 44280180 -140008482 + L1PA2 LINE L1 3341 6153 -2 201 39 0 0 chr4 44280183 44280209 -140008453 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 222 37 0 0 chr4 44280292 44280319 -140008343 + (A)n Simple_repeat Simple_repeat 1 27 0 210 359 33 22 chr4 44280772 44280864 -140007798 - MIR3 SINE MIR -31 177 85 1017 182 6 0 chr4 44282145 44282321 -140006341 - AluJb SINE Alu -16 296 120 3036 290 88 34 chr4 44282475 44282840 -140005822 - HERV16 LTR ERVL -3645 1351 1007 1791 204 27 0 chr4 44282840 44283178 -140005484 - MER7A DNA MER2_type -1 345 1 3036 290 88 34 chr4 44283178 44284094 -140004568 - HERV16 LTR ERVL -3989 1007 1 966 281 51 37 chr4 44284132 44284427 -140004235 - LTR16A LTR ERVL -93 357 59 187 363 58 43 chr4 44285146 44285633 -140003029 - L2 LINE L2 -909 2405 1912 371 349 9 9 chr4 44285645 44285751 -140002911 - L2 LINE L2 -4 3268 3163 229 325 96 5 chr4 44285912 44286056 -140002606 - MIR SINE MIR -58 150 9 249 293 37 12 chr4 44286190 44286272 -140002390 - L2 LINE L2 -48 3224 3141 25 31 0 0 chr4 44286746 44286778 -140001884 + AT_rich Low_complexity Low_complexity 1 32 0 2596 36 7 0 chr4 44287903 44288212 -140000450 - AluY SINE Alu 0 311 1 360 0 0 0 chr4 44288347 44288387 -140000275 + (CA)n Simple_repeat Simple_repeat 2 41 0 481 291 17 0 chr4 44288694 44288811 -139999851 - L2 LINE L2 -8 3305 3187 297 297 178 0 chr4 44289468 44289569 -139999093 + L2 LINE L2 3195 3313 0 294 95 0 0 chr4 44289689 44289731 -139998931 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 180 271 21 0 chr4 44289954 44290002 -139998660 + L2 LINE L2 3263 3311 -2 240 335 21 37 chr4 44291021 44291151 -139997511 - L1M1 LINE L1 -760 5543 5415 2195 127 33 30 chr4 44291151 44291513 -139997149 - THE1B LTR MaLR 0 364 2 240 335 21 37 chr4 44291513 44291573 -139997089 - L1M1 LINE L1 -888 5415 5356 4330 151 30 37 chr4 44291701 44291823 -139996839 - L1MA9 LINE L1 -26 6286 6165 363 23 0 0 chr4 44291823 44291867 -139996795 + (TG)n Simple_repeat Simple_repeat 1 44 0 4330 151 30 37 chr4 44291867 44293250 -139995412 - L1MA9 LINE L1 -147 6165 4501 537 330 132 0 chr4 44293688 44293915 -139994747 + MIR SINE MIR 4 260 -2 185 189 57 38 chr4 44294558 44294611 -139994051 + L2 LINE L2 3219 3272 0 3727 139 25 3 chr4 44295384 44296015 -139992647 + L1MA2 LINE L1 5565 6209 -95 28 29 0 0 chr4 44296047 44296082 -139992580 + AT_rich Low_complexity Low_complexity 1 35 0 211 100 14 57 chr4 44296144 44296214 -139992448 + (TA)n Simple_repeat Simple_repeat 1 67 0 815 214 12 6 chr4 44296243 44296416 -139992246 - MER5A DNA MER1_type -15 174 1 312 394 113 5 chr4 44297177 44297390 -139991272 + MIR SINE MIR 20 255 -7 185 337 48 0 chr4 44297397 44297480 -139991182 - L3 LINE CR1 -92 1485 1399 38 61 0 0 chr4 44297640 44297706 -139990956 + AT_rich Low_complexity Low_complexity 1 66 0 1044 260 100 30 chr4 44297868 44298237 -139990425 - MLT1I LTR MaLR -8 401 7 2325 97 0 3 chr4 44299265 44299573 -139989089 - AluSx SINE Alu -5 307 1 270 73 0 0 chr4 44299921 44299962 -139988700 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1216 211 16 12 chr4 44299964 44300206 -139988456 - AluJo SINE Alu -30 282 40 364 312 84 25 chr4 44300409 44300611 -139988051 + L2 LINE L2 2274 2487 -827 764 205 60 32 chr4 44301021 44301206 -139987456 + MER20 DNA MER1_type 30 219 0 263 280 75 21 chr4 44301225 44301318 -139987344 + L2 LINE L2 2919 3016 -256 223 297 0 14 chr4 44301949 44302023 -139986639 - MIR SINE MIR 0 262 190 370 302 21 0 chr4 44302118 44302214 -139986448 + LTR33 LTR ERVL 21 118 -403 2299 137 19 6 chr4 44302238 44302597 -139986065 + THE1B LTR MaLR 1 364 0 10925 116 5 29 chr4 44302597 44304207 -139984455 + THE1B-int LTR MaLR 1 1571 -9 2485 117 17 6 chr4 44304215 44304575 -139984087 + THE1B LTR MaLR 1 364 0 571 262 10 64 chr4 44304723 44304925 -139983737 + LTR33 LTR ERVL 328 518 -3 321 341 53 29 chr4 44305774 44305944 -139982718 - L3 LINE CR1 -624 953 780 298 146 0 18 chr4 44306042 44306097 -139982565 - MADE1 DNA Mariner -26 54 1 26 0 0 0 chr4 44306202 44306228 -139982434 + AT_rich Low_complexity Low_complexity 1 26 0 1598 219 40 47 chr4 44306247 44306717 -139981945 + MLT1C LTR MaLR 1 467 0 2093 120 7 0 chr4 44307779 44308062 -139980600 + AluSx SINE Alu 1 285 -27 259 317 33 97 chr4 44308710 44309041 -139979621 - MLT1J LTR MaLR -46 465 156 28 29 0 0 chr4 44309198 44309233 -139979429 + AT_rich Low_complexity Low_complexity 1 35 0 663 285 58 96 chr4 44309865 44310364 -139978298 - LTR33A LTR ERVL -8 515 36 676 286 25 23 chr4 44310659 44311106 -139977556 + LTR33 LTR ERVL 15 512 -9 28 0 0 0 chr4 44311770 44311798 -139976864 + AT_rich Low_complexity Low_complexity 1 28 0 255 31 0 0 chr4 44312749 44312781 -139975881 + (CA)n Simple_repeat Simple_repeat 2 33 0 21 0 0 0 chr4 44313008 44313029 -139975633 + AT_rich Low_complexity Low_complexity 1 21 0 361 284 71 59 chr4 44313726 44313763 -139974899 - MLT1L LTR MaLR -6 505 470 1929 148 7 0 chr4 44313763 44314073 -139974589 + AluSx SINE Alu 1 312 0 361 284 71 59 chr4 44314073 44314538 -139974124 - MLT1L LTR MaLR -41 470 4 1588 232 46 0 chr4 44314739 44315088 -139973574 + MLT1A1 LTR MaLR 1 365 0 184 352 65 19 chr4 44316727 44316835 -139971827 + MIR SINE MIR 93 205 -57 1590 231 50 57 chr4 44317243 44317789 -139970873 - MER34 LTR ERV1 0 542 1 224 29 86 0 chr4 44318677 44318712 -139969950 + A-rich Low_complexity Low_complexity 2 39 0 21 0 0 0 chr4 44318719 44318740 -139969922 + AT_rich Low_complexity Low_complexity 1 21 0 237 185 19 0 chr4 44318783 44318837 -139969825 + T-rich Low_complexity Low_complexity 5 59 0 2819 6 0 10 chr4 44319244 44319558 -139969104 - AluYa5 SINE Alu 0 311 1 1723 201 22 6 chr4 44320061 44320420 -139968242 - MLT1A1 LTR MaLR 0 365 1 453 348 57 27 chr4 44320529 44320897 -139967765 + L2 LINE L2 2158 2536 -778 853 144 20 0 chr4 44320922 44321068 -139967594 - LTR52 LTR ERVL -3 418 270 57 28 0 0 chr4 44321504 44321575 -139967087 + AT_rich Low_complexity Low_complexity 1 71 0 216 352 67 21 chr4 44321634 44321827 -139966835 - L2 LINE L2 -527 2787 2586 1567 207 39 24 chr4 44321844 44322225 -139966437 + LTR52 LTR ERVL 32 418 -3 272 330 89 51 chr4 44322259 44322595 -139966067 - L2 LINE L2 -806 2508 2160 25 31 0 0 chr4 44323136 44323168 -139965494 + AT_rich Low_complexity Low_complexity 1 32 0 536 332 27 31 chr4 44323457 44323713 -139964949 + MIR SINE MIR 8 262 0 23 0 0 0 chr4 44324680 44324703 -139963959 + AT_rich Low_complexity Low_complexity 1 23 0 180 176 0 0 chr4 44326727 44326761 -139961901 + (CA)n Simple_repeat Simple_repeat 2 35 0 481 318 29 33 chr4 44326829 44327074 -139961588 - HAL1 LINE L1 -579 1928 1685 783 315 71 19 chr4 44327129 44327673 -139960989 - HERV16 LTR ERVL -1340 4424 3778 673 365 38 45 chr4 44327866 44328468 -139960194 - HERV16 LTR ERVL -4003 993 396 2187 123 3 0 chr4 44328474 44328776 -139959886 - AluSx SINE Alu -7 305 3 649 296 132 35 chr4 44329099 44329471 -139959191 - LTR16A LTR ERVL 0 457 50 343 220 135 14 chr4 44329482 44329623 -139959039 - HAL1 LINE L1 -821 1686 1529 1575 236 108 55 chr4 44329624 44330133 -139958529 + MLT1F1 LTR MaLR 7 567 0 188 35 35 0 chr4 44330207 44330236 -139958426 + (TC)n Simple_repeat Simple_repeat 2 31 0 547 260 123 50 chr4 44330237 44330739 -139957923 - HAL1 LINE L1 -1052 1455 895 367 286 69 37 chr4 44330751 44330940 -139957722 - HAL1 LINE L1 -1852 655 461 1426 289 77 43 chr4 44331023 44331584 -139957078 - MLT1G LTR MaLR -2 588 9 1313 142 59 1 chr4 44332119 44332545 -139956117 + LTR54 LTR ERV1 1 510 0 180 326 0 0 chr4 44333486 44333535 -139955127 - MIR SINE MIR -96 166 118 226 398 0 0 chr4 44333672 44333765 -139954897 + MER5A DNA MER1_type 69 161 -28 717 136 7 14 chr4 44333767 44333914 -139954748 + (TTCC)n Simple_repeat Simple_repeat 3 148 0 793 199 18 0 chr4 44333935 44334216 -139954446 + CT-rich Low_complexity Low_complexity 1 286 0 2121 103 3 28 chr4 44334342 44334661 -139954001 - AluY SINE Alu 0 311 1 234 62 0 0 chr4 44335079 44335111 -139953551 + (T)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr4 44335576 44335597 -139953065 + AT_rich Low_complexity Low_complexity 1 21 0 334 298 7 53 chr4 44336927 44337025 -139951637 - MIR SINE MIR -3 259 169 1647 221 121 43 chr4 44337025 44337604 -139951058 + MLT1E2 LTR MaLR 1 624 -2 334 298 7 53 chr4 44337604 44337656 -139951006 - MIR SINE MIR -93 169 116 264 203 62 31 chr4 44337681 44337745 -139950917 + L2 LINE L2 3207 3272 0 1706 88 4 8 chr4 44339872 44340111 -139948551 + AluSq SINE Alu 1 238 -75 1905 111 46 0 chr4 44340156 44340436 -139948226 + AluSp SINE Alu 16 308 -5 21 0 0 0 chr4 44340835 44340856 -139947806 + AT_rich Low_complexity Low_complexity 1 21 0 1112 214 109 19 chr4 44341451 44341764 -139946898 - L1MD3 LINE L1 -263 7732 7392 1794 217 44 28 chr4 44341775 44342232 -139946430 + L1ME1 LINE L1 5698 6161 -5 793 299 148 17 chr4 44342385 44342803 -139945859 + LTR16C LTR ERVL 5 477 -14 1414 198 90 32 chr4 44342964 44343364 -139945298 + MER31B LTR ERV1 1 423 -43 1835 118 3 112 chr4 44344446 44344785 -139943877 + AluSq SINE Alu 2 303 0 27 29 0 0 chr4 44344821 44344855 -139943807 + AT_rich Low_complexity Low_complexity 1 34 0 241 343 50 50 chr4 44345416 44345614 -139943048 + MIR SINE MIR 14 211 -51 348 293 122 11 chr4 44345691 44345872 -139942790 + MIR SINE MIR 38 238 -24 822 289 91 0 chr4 44345922 44346154 -139942508 - MIR SINE MIR -8 254 2 3332 144 24 14 chr4 44346312 44346420 -139942242 + L1MA7 LINE L1 5675 5780 -511 990 23 30 0 chr4 44346420 44346552 -139942110 + (TCTA)n Simple_repeat Simple_repeat 3 138 0 3332 144 24 14 chr4 44346552 44347026 -139941636 + L1MA7 LINE L1 5780 6263 -28 21 0 0 0 chr4 44347125 44347146 -139941516 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 44347966 44347995 -139940667 + AT_rich Low_complexity Low_complexity 1 29 0 255 273 0 0 chr4 44349111 44349166 -139939496 - L2 LINE L2 -15 3257 3203 1731 143 63 38 chr4 44349694 44350059 -139938603 + THE1C LTR MaLR 1 374 -1 291 277 24 12 chr4 44350101 44350184 -139938478 + MIR3 SINE MIR 114 197 -11 2764 22 0 0 chr4 44351304 44351626 -139937036 + L1PA4 LINE L1 5833 6154 -1 232 271 122 80 chr4 44351888 44352076 -139936586 + MIR SINE MIR 26 221 -41 2207 120 3 0 chr4 44352273 44352582 -139936080 - AluSq SINE Alu -3 310 1 26 30 0 0 chr4 44352804 44352837 -139935825 + AT_rich Low_complexity Low_complexity 1 33 0 337 323 30 15 chr4 44354555 44354688 -139933974 - MLT2E LTR ERVL -456 172 38 2071 85 0 41 chr4 44355466 44355818 -139932844 + AluY SINE Alu 1 340 0 2090 108 0 10 chr4 44356827 44357141 -139931521 + AluYa5 SINE Alu 1 311 0 237 185 19 0 chr4 44357548 44357602 -139931060 + A-rich Low_complexity Low_complexity 5 59 0 21 0 0 0 chr4 44357645 44357666 -139930996 + AT_rich Low_complexity Low_complexity 1 21 0 224 29 86 0 chr4 44357673 44357708 -139930954 + T-rich Low_complexity Low_complexity 2 39 0 876 200 45 10 chr4 44358596 44358796 -139929866 + MER34 LTR ERV1 1 207 -335 217 121 64 29 chr4 44358907 44359047 -139929615 + (TTATA)n Simple_repeat Simple_repeat 3 147 0 414 106 50 38 chr4 44359077 44359237 -139929425 + (TTATA)n Simple_repeat Simple_repeat 5 166 0 * 463 32 114 13 chr4 44359209 44359367 -139929295 + (TA)n Simple_repeat Simple_repeat 1 174 0 39 0 0 0 chr4 44359372 44359411 -139929251 + AT_rich Low_complexity Low_complexity 1 39 0 26899 82 15 2 chr4 44359422 44359581 -139929081 + HERVL LTR ERVL 1081 1237 -4417 1745 122 3 113 chr4 44359581 44359917 -139928745 + AluSx SINE Alu 1 299 -3 26899 82 15 2 chr4 44359917 44363263 -139925399 + HERVL LTR ERVL 1237 4630 -1024 218 150 50 0 chr4 44363414 44363454 -139925208 - MIR SINE MIR -1 261 220 671 270 17 6 chr4 44363486 44363660 -139925002 + AluJb SINE Alu 129 304 -8 683 152 0 8 chr4 44363685 44363817 -139924845 + GA-rich Low_complexity Low_complexity 1 131 0 276 349 38 23 chr4 44363817 44363949 -139924713 - MIR SINE MIR -128 134 1 225 65 0 0 chr4 44366026 44366057 -139922605 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 676 33 0 22 chr4 44366547 44366639 -139922023 + L1MA1 LINE L1 6209 6298 -4 21 36 0 0 chr4 44367494 44367522 -139921140 + AT_rich Low_complexity Low_complexity 1 28 0 2919 92 7 9 chr4 44368722 44369144 -139919518 - L1MA1 LINE L1 0 6302 5882 26 0 0 0 chr4 44370049 44370075 -139918587 + AT_rich Low_complexity Low_complexity 1 26 0 1112 159 0 17 chr4 44370945 44371121 -139917541 - AluJo SINE Alu -16 296 124 2251 212 29 46 chr4 44371166 44371210 -139917452 - MLT2B2 LTR ERVL 0 515 472 614 84 0 21 chr4 44371210 44371305 -139917357 + (TAGA)n Simple_repeat Simple_repeat 4 96 0 2251 212 29 46 chr4 44371305 44371784 -139916878 - MLT2B2 LTR ERVL -43 472 1 1813 175 0 3 chr4 44371855 44372147 -139916515 + AluSx SINE Alu 1 291 -21 184 333 33 11 chr4 44372267 44372357 -139916305 - MIR SINE MIR -11 251 160 363 200 0 0 chr4 44372577 44372652 -139916010 - L1PA10 LINE L1 -1869 4277 4203 5933 146 35 6 chr4 44372653 44374488 -139914174 + L1PA10 LINE L1 4278 6160 -8 389 290 103 27 chr4 44374715 44374953 -139913709 + MLT1H LTR MaLR 47 267 -142 598 224 147 39 chr4 44375611 44375767 -139912895 - MER5A DNA MER1_type 0 189 17 207 348 96 39 chr4 44377064 44377346 -139911316 + L2 LINE L2 2597 2894 -420 392 273 154 36 chr4 44377389 44377609 -139911053 + L1M4 LINE L1 4341 4586 -1560 417 155 21 10 chr4 44379752 44379849 -139908813 + (TATG)n Simple_repeat Simple_repeat 3 100 0 288 0 0 0 chr4 44380985 44381017 -139907645 + (TC)n Simple_repeat Simple_repeat 2 33 0 * 522 86 0 0 chr4 44381016 44381097 -139907565 + (TA)n Simple_repeat Simple_repeat 1 81 0 203 324 0 29 chr4 44381268 44381336 -139907326 - L2 LINE L2 -16 3297 3232 352 306 188 16 chr4 44381409 44381664 -139906998 - L2 LINE L2 -1 3312 3014 257 250 0 16 chr4 44382380 44382444 -139906218 - L2 LINE L2 0 3313 3251 184 328 148 0 chr4 44383392 44383453 -139905209 - MIR SINE MIR -107 101 32 423 238 91 21 chr4 44383610 44383753 -139904909 + MLT1C LTR MaLR 1 153 -314 263 203 91 161 chr4 44386447 44386590 -139902072 - MIR SINE MIR -82 180 48 194 396 0 11 chr4 44388219 44388310 -139900352 - MIR SINE MIR -116 146 57 702 269 52 0 chr4 44388384 44388577 -139900085 + MIR SINE MIR 14 216 -46 242 288 42 34 chr4 44388613 44388731 -139899931 + L2 LINE L2 2222 2340 -974 2378 230 33 29 chr4 44388737 44389264 -139899398 + MER90 LTR ERV1 1 532 -82 1874 184 74 2 chr4 44389264 44389667 -139898995 - MSTB1 LTR MaLR 0 432 1 2378 230 33 29 chr4 44389667 44389751 -139898911 + MER90 LTR ERV1 532 614 0 3883 155 52 8 chr4 44390069 44390866 -139897796 + Tigger3b DNA MER2_type 1 847 -384 672 199 262 19 chr4 44390866 44391072 -139897590 + MSTB LTR MaLR 1 256 -170 317 48 0 0 chr4 44391072 44391114 -139897548 - MADE1 DNA Mariner -35 45 4 3012 218 48 11 chr4 44391117 44391742 -139896920 + MSTA-int LTR MaLR 620 1267 -384 2114 154 36 33 chr4 44391742 44392105 -139896557 - THE1B LTR MaLR 0 364 1 2284 128 8 28 chr4 44392105 44392496 -139896166 + MSTA-int LTR MaLR 1263 1645 -6 1929 152 119 35 chr4 44392501 44392675 -139895987 + MSTA LTR MaLR 1 159 -269 2712 16 0 3 chr4 44392675 44392980 -139895682 + AluYb8 SINE Alu 1 304 -14 1929 152 119 35 chr4 44392980 44393200 -139895462 + MSTA LTR MaLR 159 428 0 2205 164 46 5 chr4 44393201 44393574 -139895088 + Tigger3b DNA MER2_type 844 1231 0 540 242 24 0 chr4 44393631 44393755 -139894907 - MER94 DNA DNA -7 127 1 480 316 30 6 chr4 44395504 44395672 -139892990 + MLT1F LTR MaLR 1 172 -370 408 176 0 0 chr4 44395676 44395744 -139892918 + AluJ/FRAM SINE Alu 231 298 -14 1917 226 35 41 chr4 44395768 44396309 -139892353 + LTR55 LTR ERV 1 538 -10 1026 256 142 15 chr4 44396329 44396661 -139892001 + MLT1F LTR MaLR 169 542 0 26 0 0 0 chr4 44396803 44396829 -139891833 + AT_rich Low_complexity Low_complexity 1 26 0 1953 106 50 3 chr4 44397537 44397820 -139890842 + AluSg1 SINE Alu 1 296 -13 289 342 26 17 chr4 44397969 44398086 -139890576 - L2 LINE L2 -1 3312 3195 23 33 0 0 chr4 44398291 44398321 -139890341 + AT_rich Low_complexity Low_complexity 1 30 0 517 308 32 32 chr4 44398533 44398780 -139889882 + MER102a DNA MER1_type 81 327 -3 219 276 138 16 chr4 44399217 44399340 -139889322 - MIR SINE MIR 0 262 125 22 35 0 0 chr4 44399901 44399930 -139888732 + AT_rich Low_complexity Low_complexity 1 29 0 2170 133 33 11 chr4 44401677 44402044 -139886618 + THE1C LTR MaLR 1 375 0 6544 162 39 54 chr4 44402045 44403443 -139885219 + THE1C-int LTR MaLR 2 1378 -202 1755 180 31 52 chr4 44403443 44403782 -139884880 + THE1C LTR MaLR 1 333 -42 1736 199 43 6 chr4 44403782 44404133 -139884529 - THE1B LTR MaLR 0 364 1 1755 180 31 52 chr4 44404133 44404176 -139884486 + THE1C LTR MaLR 333 375 0 1225 154 0 5 chr4 44404176 44404384 -139884278 + THE1C-int LTR MaLR 1374 1580 0 2093 154 27 11 chr4 44404384 44404753 -139883909 + THE1C LTR MaLR 1 375 0 268 296 139 17 chr4 44404753 44404868 -139883794 + MIR SINE MIR 5 133 -129 2254 97 0 0 chr4 44405227 44405526 -139883136 + AluY SINE Alu 1 299 -12 2114 212 63 2 chr4 44405604 44406162 -139882500 + L1MA4 LINE L1 2288 2908 -3238 10805 182 27 16 chr4 44407142 44408942 -139879720 + L1MA4 LINE L1 2924 4703 -1597 194 0 39 0 chr4 44408942 44408968 -139879694 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 10805 182 27 16 chr4 44408968 44409806 -139878856 + L1MA4 LINE L1 4703 5530 -770 2213 125 0 3 chr4 44409806 44410119 -139878543 - AluSx SINE Alu 0 312 1 10805 182 27 16 chr4 44410119 44410314 -139878348 + L1MA4 LINE L1 5530 5721 -579 258 32 0 0 chr4 44410314 44410345 -139878317 + (CA)n Simple_repeat Simple_repeat 2 32 0 10805 182 27 16 chr4 44410345 44410840 -139877822 + L1MA4 LINE L1 5721 6293 -7 1347 205 7 41 chr4 44410866 44411159 -139877503 + AluJo SINE Alu 1 283 -29 189 74 0 0 chr4 44411445 44411472 -139877190 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2957 9 0 0 chr4 44411472 44411806 -139876856 - L1PA2 LINE L1 -11 6144 5811 2847 186 30 32 chr4 44411806 44412430 -139876232 + MER67C LTR ERV1 88 710 0 1770 148 29 60 chr4 44412530 44412915 -139875747 - THE1C LTR MaLR 0 375 3 9148 141 47 8 chr4 44412917 44414047 -139874615 - THE1C-int LTR MaLR 0 1580 495 2007 141 0 0 chr4 44414047 44414337 -139874325 - AluSx SINE Alu -17 295 6 9148 141 47 8 chr4 44414337 44414402 -139874260 - THE1C-int LTR MaLR -1085 495 434 4961 83 22 8 chr4 44414402 44415114 -139873548 - LTR30 LTR ERV1 0 722 1 9148 141 47 8 chr4 44415114 44415439 -139873223 - THE1C-int LTR MaLR -1146 434 1 1838 168 21 37 chr4 44415439 44415819 -139872843 - THE1C LTR MaLR 0 375 2 657 251 48 139 chr4 44415978 44416309 -139872353 + L1M4b LINE L1 18 318 -6541 807 207 49 32 chr4 44416318 44416603 -139872059 + L1M4b LINE L1 1526 1815 -5040 31 0 0 0 chr4 44416781 44416812 -139871850 + AT_rich Low_complexity Low_complexity 1 31 0 2557 49 0 3 chr4 44417338 44417645 -139871017 - AluY SINE Alu -5 306 1 219 235 0 0 chr4 44418849 44418900 -139869762 + (TG)n Simple_repeat Simple_repeat 1 51 0 235 277 62 0 chr4 44419603 44419668 -139868994 + L2 LINE L2 3245 3313 0 297 328 135 10 chr4 44420019 44420240 -139868422 - MIR SINE MIR -2 260 15 1649 211 71 14 chr4 44420623 44420987 -139867675 - MLT1B LTR MaLR 0 390 6 21 0 0 0 chr4 44421918 44421939 -139866723 + AT_rich Low_complexity Low_complexity 1 21 0 188 83 0 28 chr4 44422714 44422750 -139865912 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 6711 74 5 2 chr4 44422752 44424106 -139864556 - L1PA7 LINE L1 -7 6147 4791 1373 226 35 73 chr4 44424575 44424974 -139863688 + MLT1B LTR MaLR 2 385 -5 33 73 0 0 chr4 44425727 44425795 -139862867 + AT_rich Low_complexity Low_complexity 1 68 0 349 366 31 7 chr4 44428274 44428561 -139860101 + L1ME LINE L1 5526 5819 -302 4246 176 53 6 chr4 44428581 44429409 -139859253 + L1MC1 LINE L1 5467 6333 0 3212 123 15 2 chr4 44429547 44430027 -139858635 + LTR15 LTR ERV1 1 486 -7 280 314 78 31 chr4 44430141 44430399 -139858263 + L1MEd LINE L1 561 830 -5289 1980 122 9 28 chr4 44430512 44430833 -139857829 + LTR15 LTR ERV1 172 486 -7 293 280 116 49 chr4 44430947 44431394 -139857268 + L1MEd LINE L1 561 1037 -5082 349 243 79 29 chr4 44431551 44431691 -139856971 - MLT1F1 LTR MaLR -113 454 308 391 232 0 0 chr4 44431986 44432068 -139856594 + Tigger5 DNA MER2_type 2241 2322 -1 461 311 56 0 chr4 44432233 44432332 -139856330 + MIR SINE MIR 20 133 -129 1412 204 128 85 chr4 44432332 44432816 -139855846 - MLT1D LTR MaLR 0 505 1 461 311 56 0 chr4 44432816 44432877 -139855785 + MIR SINE MIR 133 189 -73 28 0 0 0 chr4 44432920 44432948 -139855714 + AT_rich Low_complexity Low_complexity 1 28 0 1712 197 134 8 chr4 44433479 44433859 -139854803 + LTR3 LTR ERVK 5 432 0 524 311 94 24 chr4 44434274 44434619 -139854043 - HERV16 LTR ERVL -2261 2735 2397 294 201 201 62 chr4 44434650 44434794 -139853868 - L1M4 LINE L1 -837 5309 5146 441 376 25 10 chr4 44434869 44435066 -139853596 - HERV16 LTR ERVL -2777 2219 2020 548 331 5 0 chr4 44435169 44435353 -139853309 - HERV16 LTR ERVL -3039 1957 1773 924 337 57 14 chr4 44435593 44436083 -139852579 - HERV16 LTR ERVL -4484 512 2 403 339 132 23 chr4 44436086 44436390 -139852272 - LTR16A LTR ERVL -2 448 112 22 35 0 0 chr4 44436533 44436562 -139852100 + AT_rich Low_complexity Low_complexity 1 29 0 357 250 41 78 chr4 44436710 44436944 -139851718 - MER5C DNA MER1_type -3 321 5 306 304 6 35 chr4 44436944 44437182 -139851480 - L1MDb LINE L1 -5021 1375 1137 22 94 0 0 chr4 44437748 44437812 -139850850 + AT_rich Low_complexity Low_complexity 1 64 0 329 324 20 0 chr4 44437905 44438007 -139850655 + ERVL LTR ERVL 3314 3417 -2347 317 354 29 17 chr4 44438126 44438301 -139850361 + L1ME3A LINE L1 5706 5882 -288 226 78 62 16 chr4 44438383 44438447 -139850215 + (TA)n Simple_repeat Simple_repeat 1 67 0 368 337 67 6 chr4 44438749 44438927 -139849735 + LTR33 LTR ERVL 1 189 -332 266 177 104 52 chr4 44439046 44439142 -139849520 + LTR33A LTR ERVL 327 427 -96 192 369 148 17 chr4 44440530 44440706 -139847956 - L2 LINE L2 -414 2900 2702 508 371 38 4 chr4 44441356 44441596 -139847066 - MIR SINE MIR 0 262 15 229 126 57 40 chr4 44442236 44442411 -139846251 + (TA)n Simple_repeat Simple_repeat 2 179 0 * 258 96 72 24 chr4 44442376 44442501 -139846161 + (TTATA)n Simple_repeat Simple_repeat 1 131 0 383 211 20 20 chr4 44442503 44442655 -139846007 + (TATAA)n Simple_repeat Simple_repeat 3 154 0 347 95 101 0 chr4 44442665 44442823 -139845839 + (TA)n Simple_repeat Simple_repeat 2 175 0 40 21 0 0 chr4 44442823 44442870 -139845792 + AT_rich Low_complexity Low_complexity 1 47 0 328 92 98 6 chr4 44442870 44443034 -139845628 + (TA)n Simple_repeat Simple_repeat 2 180 0 290 178 35 11 chr4 44443060 44443234 -139845428 + (TA)n Simple_repeat Simple_repeat 2 179 0 229 156 92 18 chr4 44443247 44443356 -139845306 + (TTATA)n Simple_repeat Simple_repeat 5 121 0 324 77 87 0 chr4 44443361 44443465 -139845197 + (TA)n Simple_repeat Simple_repeat 1 113 0 67 42 0 0 chr4 44443468 44443563 -139845099 + AT_rich Low_complexity Low_complexity 1 95 0 2946 85 18 5 chr4 44443563 44443961 -139844701 - MLT2A1 LTR ERVL -41 403 1 1677 174 31 29 chr4 44445407 44445793 -139842869 - L1MA7 LINE L1 -1 6290 5904 293 200 0 0 chr4 44445796 44445856 -139842806 + L1MA7 LINE L1 5832 5891 -421 496 353 173 12 chr4 44447259 44447738 -139840924 + LTR67 LTR ERVL 1 556 -1 213 39 0 0 chr4 44447927 44447953 -139840709 + (TG)n Simple_repeat Simple_repeat 2 27 0 737 300 14 0 chr4 44448415 44448638 -139840024 - LTR16A LTR ERVL 0 450 225 516 291 78 19 chr4 44448735 44449003 -139839659 - LTR43 LTR ERV1 -132 470 187 481 306 25 20 chr4 44449328 44449527 -139839135 - LTR16A LTR ERVL -233 217 18 21 0 0 0 chr4 44449542 44449563 -139839099 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chr4 44449587 44449618 -139839044 + (CA)n Simple_repeat Simple_repeat 2 32 0 52 85 0 0 chr4 44449706 44449835 -139838827 + AT_rich Low_complexity Low_complexity 1 129 0 24 0 0 0 chr4 44450393 44450417 -139838245 + AT_rich Low_complexity Low_complexity 1 24 0 30 0 0 0 chr4 44450553 44450583 -139838079 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr4 44450767 44450804 -139837858 + AT_rich Low_complexity Low_complexity 1 37 0 22 70 0 0 chr4 44451380 44451423 -139837239 + AT_rich Low_complexity Low_complexity 1 43 0 21 71 0 0 chr4 44453141 44453183 -139835479 + AT_rich Low_complexity Low_complexity 1 42 0 4151 191 32 46 chr4 44453617 44453772 -139834890 - L1MA9 LINE L1 -2 6310 6154 306 0 0 0 chr4 44453772 44453806 -139834856 + (TG)n Simple_repeat Simple_repeat 1 34 0 4151 191 32 46 chr4 44453806 44453922 -139834740 - L1MA9 LINE L1 -158 6154 6038 1863 149 7 0 chr4 44453922 44454217 -139834445 - AluSx SINE Alu -15 297 1 4151 191 32 46 chr4 44454217 44454623 -139834039 - L1MA9 LINE L1 -274 6038 5628 2412 74 3 0 chr4 44454623 44454933 -139833729 + AluY SINE Alu 1 311 0 4151 191 32 46 chr4 44454933 44455799 -139832863 - L1MA9 LINE L1 -684 5628 4792 1629 124 17 21 chr4 44455799 44456089 -139832573 - AluSc SINE Alu -15 294 6 4151 191 32 46 chr4 44456089 44456572 -139832090 - L1MA9 LINE L1 -1520 4792 4304 9455 168 29 5 chr4 44456603 44459548 -139829114 - L1MA1 LINE L1 -6 7715 4696 2155 107 3 83 chr4 44459550 44459924 -139828738 + LTR14A LTR ERVK 1 344 0 4634 96 3 8 chr4 44459924 44460568 -139828094 + HERVK14 LTR ERVK 1 641 -5304 1416 65 16 0 chr4 44460551 44460736 -139827926 + HERVK14 LTR ERVK 1366 1553 -4392 * 12591 67 0 32 chr4 44460739 44462472 -139826190 + HERVK14 LTR ERVK 3976 5579 -366 1226 165 14 14 chr4 44462474 44462505 -139826157 + PRIMA41-int LTR ERV1 7545 7756 0 1369 88 6 0 chr4 44462505 44462686 -139825976 + HERVK14 LTR ERVK 5578 5759 -186 315 210 0 16 chr4 44462686 44462748 -139825914 + MER41C LTR ERV1 1 61 -493 506 77 0 0 chr4 44462748 44462813 -139825849 + HERVK14 LTR ERVK 5822 5886 -59 718 326 19 16 chr4 44462855 44463177 -139825485 + HERVK14 LTR ERVK 7070 7392 -25 2292 78 3 83 chr4 44463189 44463561 -139825101 + LTR14A LTR ERVK 1 342 -2 18795 190 36 9 chr4 44463563 44468130 -139820532 - L1MA1 LINE L1 -2865 4700 13 4597 218 101 14 chr4 44468131 44469433 -139819229 - L1MA9 LINE L1 -1830 4316 2902 218 203 31 16 chr4 44469585 44469649 -139819013 + (TA)n Simple_repeat Simple_repeat 2 66 0 3586 109 5 35 chr4 44469808 44470379 -139818283 - MER41A LTR ERV1 0 554 1 23 0 0 0 chr4 44471549 44471572 -139817090 + AT_rich Low_complexity Low_complexity 1 23 0 235 276 55 87 chr4 44472290 44472417 -139816245 - MLT1K LTR MaLR -177 411 289 203 319 56 0 chr4 44473072 44473144 -139815518 - MER5A DNA MER1_type -27 162 87 21 0 0 0 chr4 44473532 44473553 -139815109 + AT_rich Low_complexity Low_complexity 1 21 0 215 167 21 0 chr4 44473638 44473686 -139814976 + (TA)n Simple_repeat Simple_repeat 2 50 0 23 0 0 0 chr4 44473830 44473853 -139814809 + AT_rich Low_complexity Low_complexity 1 23 0 473 291 72 45 chr4 44474026 44474291 -139814371 + L1ME LINE L1 817 1088 -4982 596 339 89 8 chr4 44474303 44474817 -139813845 + L1ME LINE L1 1193 1748 -4513 2387 136 22 2 chr4 44474819 44475225 -139813437 + L1MA3 LINE L1 5784 6197 -108 30 27 0 0 chr4 44475226 44475263 -139813399 + AT_rich Low_complexity Low_complexity 1 37 0 404 256 39 35 chr4 44475265 44475468 -139813194 + L1ME LINE L1 1749 1952 -4309 616 213 69 65 chr4 44475510 44475726 -139812936 + MLT1B LTR MaLR 1 217 -173 254 191 0 0 chr4 44475728 44475775 -139812887 + L1ME LINE L1 2072 2118 -3962 448 100 0 0 chr4 44475775 44475835 -139812827 - MSTA LTR MaLR 0 428 369 451 139 13 13 chr4 44475835 44475914 -139812748 - THE1C-int LTR MaLR -1500 80 2 1983 133 74 11 chr4 44475915 44476268 -139812394 - THE1C LTR MaLR 0 375 1 228 312 0 0 chr4 44476839 44476916 -139811746 - L1MEc LINE L1 -1541 4605 4529 725 322 51 19 chr4 44476941 44477729 -139810933 - L1MEc LINE L1 -2485 3661 2849 395 360 45 0 chr4 44477952 44478152 -139810510 - MIR SINE MIR -48 214 6 330 333 47 16 chr4 44478240 44478369 -139810293 + L2 LINE L2 2903 3035 -237 6648 76 16 4 chr4 44478376 44479379 -139809283 - L1PA7 LINE L1 0 6154 5147 4037 97 0 0 chr4 44479396 44479964 -139808698 + L1P LINE L1 4533 5100 -1046 595 277 117 39 chr4 44480063 44480478 -139808184 - L1MEc LINE L1 -3611 2535 2124 25 0 0 0 chr4 44480498 44480523 -139808139 + AT_rich Low_complexity Low_complexity 1 25 0 24 53 0 0 chr4 44481239 44481277 -139807385 + AT_rich Low_complexity Low_complexity 1 38 0 390 314 15 7 chr4 44481713 44481850 -139806812 + MIR3 SINE MIR 67 204 -4 2008 61 51 24 chr4 44481916 44482209 -139806453 + AluY SINE Alu 1 301 -10 831 274 65 65 chr4 44482602 44483018 -139805644 - L2 LINE L2 0 3313 2898 1018 240 24 35 chr4 44483094 44483382 -139805280 - MLT1A1 LTR MaLR -8 357 73 1894 102 39 14 chr4 44484313 44484596 -139804066 + AluSq SINE Alu 23 312 -1 236 331 46 23 chr4 44485569 44485699 -139802963 - LTR16B LTR ERVL -147 317 185 28 86 0 0 chr4 44486673 44486743 -139801919 + AT_rich Low_complexity Low_complexity 1 70 0 456 313 45 28 chr4 44486901 44487077 -139801585 - MIR SINE MIR -48 214 36 186 256 33 83 chr4 44487258 44487379 -139801283 + MIR SINE MIR 148 262 0 367 229 201 45 chr4 44487987 44488166 -139800496 + MIR SINE MIR 1 207 -55 264 59 0 0 chr4 44488774 44488808 -139799854 + (CA)n Simple_repeat Simple_repeat 2 35 0 3505 133 71 16 chr4 44489039 44489454 -139799208 - L1MC1 LINE L1 -17 6316 5851 2587 87 3 11 chr4 44489454 44489811 -139798851 - THE1A LTR MaLR 0 355 2 3505 133 71 16 chr4 44489811 44490041 -139798621 - L1MC1 LINE L1 -482 5851 5635 499 339 91 4 chr4 44490620 44490665 -139797997 + MLT1J2 LTR MaLR 201 241 -209 823 193 30 30 chr4 44490665 44490867 -139797795 - MER105 DNA DNA -2 202 1 499 339 91 4 chr4 44490867 44491051 -139797611 + MLT1J2 LTR MaLR 241 450 0 1160 21 0 14 chr4 44491252 44491396 -139797266 - L1PA4 LINE L1 0 6155 6014 21 36 0 0 chr4 44492437 44492465 -139796197 + AT_rich Low_complexity Low_complexity 1 28 0 251 259 76 38 chr4 44492494 44492625 -139796037 - L2 LINE L2 -62 3251 3116 252 347 133 5 chr4 44492749 44492945 -139795717 - L2 LINE L2 -2618 696 476 528 350 70 60 chr4 44493721 44494366 -139794296 + L2 LINE L2 632 1282 -2032 815 367 113 15 chr4 44494384 44495330 -139793332 + L2 LINE L2 1792 2830 -484 300 344 63 28 chr4 44495451 44495704 -139792958 + L2 LINE L2 3047 3308 -5 2264 108 3 0 chr4 44495925 44496231 -139792431 + AluSx SINE Alu 3 309 -3 395 222 145 8 chr4 44496449 44496566 -139792096 - MER63 DNA MER1_type 0 1061 929 17222 86 12 3 chr4 44496669 44498950 -139789712 - HERVL LTR ERVL -620 5034 2733 3138 97 21 1 chr4 44499050 44499739 -139788923 - L1P3 LINE L1 -566 5588 4891 981 120 38 0 chr4 44500755 44500913 -139787749 - MER2 DNA MER2_type -136 209 46 335 122 0 0 chr4 44500916 44500965 -139787697 + L1M1 LINE L1 5651 5699 -603 354 234 45 9 chr4 44501203 44501314 -139787348 + L1MC4 LINE L1 7922 8036 -6 2264 86 0 7 chr4 44501352 44501653 -139787009 - AluY SINE Alu -12 299 1 358 368 187 20 chr4 44501939 44502238 -139786424 - L3 LINE CR1 -3 1574 1226 2528 146 38 11 chr4 44503264 44503715 -139784947 - L1PB3 LINE L1 -7 6147 5685 36 0 0 0 chr4 44503952 44503988 -139784674 + AT_rich Low_complexity Low_complexity 1 36 0 2257 95 0 0 chr4 44504085 44504380 -139784282 + AluSc SINE Alu 1 295 -14 22 35 0 0 chr4 44505561 44505590 -139783072 + AT_rich Low_complexity Low_complexity 1 29 0 842 292 77 9 chr4 44505724 44506073 -139782589 + ERVL LTR ERVL 5064 5436 -328 193 179 0 45 chr4 44506077 44506144 -139782518 + (TATATG)n Simple_repeat Simple_repeat 1 64 0 2239 92 3 7 chr4 44506613 44506918 -139781744 - AluSg1 SINE Alu -5 304 1 838 55 0 0 chr4 44507258 44507367 -139781295 + L1PA6 LINE L1 6046 6154 0 521 257 105 0 chr4 44507965 44508136 -139780526 - MER5A DNA MER1_type 0 189 1 1361 216 50 47 chr4 44508327 44508689 -139779973 + MLT1A1 LTR MaLR 3 365 0 1811 189 19 22 chr4 44508916 44509282 -139779380 + MLT1A1 LTR MaLR 1 365 0 671 304 117 26 chr4 44509287 44509672 -139778990 + MLT1J2 LTR MaLR 1 420 -30 221 176 0 20 chr4 44509685 44509736 -139778926 + (TATG)n Simple_repeat Simple_repeat 3 52 0 439 342 86 6 chr4 44509786 44510030 -139778632 + MLT1H1 LTR MaLR 2 303 -292 1644 188 44 29 chr4 44510147 44510488 -139778174 - THE1B LTR MaLR 0 364 19 10822 112 9 5 chr4 44510491 44512059 -139776603 - THE1B-int LTR MaLR -6 1574 1 398 169 0 0 chr4 44512059 44512124 -139776538 - THE1C LTR MaLR 0 364 300 * 1100 134 6 0 chr4 44512121 44512278 -139776384 - THE1C LTR MaLR -216 159 2 748 333 77 16 chr4 44512750 44513177 -139775485 - MER20B DNA MER1_type -328 455 3 193 370 62 0 chr4 44513179 44513260 -139775402 - L2 LINE L2 -504 2810 2725 803 275 95 75 chr4 44513332 44513786 -139774876 - L2 LINE L2 -599 2715 2253 593 321 14 24 chr4 44513806 44514018 -139774644 - MLT2E LTR ERVL -206 422 213 1724 135 193 11 chr4 44514088 44514450 -139774212 - MSTA LTR MaLR 0 428 1 186 351 33 60 chr4 44514736 44514887 -139773775 - MIR SINE MIR -62 200 54 324 340 58 5 chr4 44515748 44515939 -139772723 + MIR SINE MIR 54 254 -8 228 390 49 16 chr4 44516159 44516282 -139772380 - L2 LINE L2 -1 3271 3145 237 359 0 0 chr4 44516342 44516420 -139772242 + MER5A DNA MER1_type 112 189 0 1913 101 7 0 chr4 44516575 44516852 -139771810 - L1PA13 LINE L1 -3 6160 5882 3488 243 82 58 chr4 44516982 44518744 -139769918 + L1ME1 LINE L1 3014 4817 -1329 1402 234 6 30 chr4 44518752 44519085 -139769577 - MLT1B LTR MaLR -4 386 62 1066 282 26 53 chr4 44519096 44519550 -139769112 + L1ME1 LINE L1 5675 6116 -50 272 200 0 0 chr4 44519612 44519662 -139769000 - Alu SINE Alu -5 295 246 8410 26 0 0 chr4 44520466 44521474 -139767188 - L1PA4 LINE L1 -788 5358 4351 2491 37 0 0 chr4 44521475 44521770 -139766892 + L1PA4 LINE L1 5367 5661 -494 2196 51 0 0 chr4 44521870 44522143 -139766519 + L1PA4 LINE L1 5880 6152 -3 23 0 0 0 chr4 44522589 44522612 -139766050 + AT_rich Low_complexity Low_complexity 1 23 0 325 287 48 43 chr4 44523393 44523581 -139765081 + L1M4 LINE L1 2200 2388 -3758 1509 172 40 23 chr4 44523841 44524143 -139764519 + AluJb SINE Alu 1 307 -5 295 343 29 0 chr4 44524349 44524486 -139764176 + L1ME LINE L1 5507 5647 -474 31 68 0 0 chr4 44525604 44525663 -139762999 + AT_rich Low_complexity Low_complexity 1 59 0 32 26 0 0 chr4 44525706 44525745 -139762917 + AT_rich Low_complexity Low_complexity 1 39 0 870 122 64 0 chr4 44526797 44526953 -139761709 + L1MA4A LINE L1 6132 6297 -6 34 24 0 0 chr4 44526985 44527026 -139761636 + AT_rich Low_complexity Low_complexity 1 41 0 22 35 0 0 chr4 44527059 44527088 -139761574 + AT_rich Low_complexity Low_complexity 1 29 0 186 303 105 13 chr4 44527391 44527467 -139761195 + L2 LINE L2 3213 3295 -18 24 0 0 0 chr4 44528148 44528172 -139760490 + AT_rich Low_complexity Low_complexity 1 24 0 548 308 106 40 chr4 44528180 44528632 -139760030 + L2 LINE L2 1811 2292 -1022 5275 55 1 199 chr4 44530372 44531402 -139757260 + LTR12 LTR ERV1 1 826 0 1684 213 19 62 chr4 44531797 44532219 -139756443 - MER67D LTR ERV1 -110 404 1 436 235 26 0 chr4 44532328 44532443 -139756219 - L1MC4 LINE L1 -124 7918 7801 623 191 18 12 chr4 44533278 44533446 -139755216 + CT-rich Low_complexity Low_complexity 4 172 0 309 169 0 0 chr4 44533550 44533609 -139755053 + CT-rich Low_complexity Low_complexity 2 60 0 1686 161 0 11 chr4 44533617 44533890 -139754772 - AluSx SINE Alu -39 273 4 2421 149 18 25 chr4 44533948 44534385 -139754277 + Tigger2a DNA MER2_type 1 434 0 532 315 72 0 chr4 44534432 44534613 -139754049 - MER58C DNA MER1_type -1 214 21 244 330 60 10 chr4 44535106 44535206 -139753456 + L2 LINE L2 3209 3313 0 21 0 0 0 chr4 44536010 44536031 -139752631 + AT_rich Low_complexity Low_complexity 1 21 0 1642 160 18 24 chr4 44586696 44587027 -139701635 + L1MA7 LINE L1 5962 6290 -1 22 35 0 0 chr4 44587267 44587296 -139701366 + AT_rich Low_complexity Low_complexity 1 29 0 916 198 210 21 chr4 44587473 44587801 -139700861 - MER63D DNA MER1_type -629 432 43 325 294 33 0 chr4 44587801 44587893 -139700769 + (CATG)n Simple_repeat Simple_repeat 1 95 0 191 167 0 42 chr4 44588043 44588091 -139700571 + (CATA)n Simple_repeat Simple_repeat 3 48 0 285 225 14 14 chr4 44588093 44588164 -139700498 - MER63D DNA MER1_type -988 73 3 654 298 58 10 chr4 44588318 44588523 -139700139 + MIR SINE MIR 13 227 -35 7579 25 1 1 chr4 44588775 44590426 -139698236 - L1PA3 LINE L1 -3 6152 4505 26 0 0 0 chr4 44590721 44590747 -139697915 + AT_rich Low_complexity Low_complexity 1 26 0 1183 8 0 0 chr4 44590747 44590881 -139697781 - L1HS LINE L1 -2 6153 6020 585 300 87 9 chr4 44590881 44591111 -139697551 - MIR SINE MIR -3 259 12 27 29 0 0 chr4 44591416 44591450 -139697212 + AT_rich Low_complexity Low_complexity 1 34 0 2096 144 23 9 chr4 44591637 44591983 -139696679 + THE1C-int LTR MaLR 1002 1352 -228 1692 172 31 16 chr4 44592086 44592406 -139696256 + THE1C LTR MaLR 51 375 0 21 36 0 0 chr4 44592710 44592738 -139695924 + AT_rich Low_complexity Low_complexity 1 28 0 186 118 0 0 chr4 44593221 44593255 -139695407 + (TCTCTG)n Simple_repeat Simple_repeat 1 34 0 6657 65 10 13 chr4 44594636 44595670 -139692992 + L1PA6 LINE L1 5119 6149 -5 329 132 0 0 chr4 44595677 44595730 -139692932 + Alu SINE Alu 1 53 -249 298 85 0 0 chr4 44595728 44595775 -139692887 - Alu SINE Alu -254 47 1 * 387 335 33 7 chr4 44595961 44596113 -139692549 - LTR67 LTR ERVL -55 502 347 1735 227 117 8 chr4 44596545 44597025 -139691637 - MER34 LTR ERV1 0 542 11 2217 108 0 19 chr4 44597670 44597984 -139690678 + AluSg SINE Alu 1 308 -2 356 261 9 118 chr4 44598446 44598657 -139690005 - MIR SINE MIR -7 255 68 2018 130 14 0 chr4 44598874 44599167 -139689495 - AluSx SINE Alu -12 300 4 459 0 0 0 chr4 44599273 44599324 -139689338 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 627 279 26 11 chr4 44599507 44599697 -139688965 + MIR SINE MIR 20 212 -50 7461 36 0 0 chr4 44600741 44601709 -139686953 - L1PA3 LINE L1 -3 6152 5184 11127 194 15 19 chr4 44601709 44604400 -139684262 - L1M1 LINE L1 -743 5403 2799 6349 16 3 1 chr4 44604400 44605148 -139683514 + L1P LINE L1 4508 5256 -890 27659 53 3 0 chr4 44605248 44609603 -139679059 - L1P LINE L1 -1780 4366 1 916 259 118 94 chr4 44609710 44610261 -139678401 - MLT1E LTR MaLR 0 567 4 301 379 38 24 chr4 44611384 44611595 -139677067 - MLT1I LTR MaLR -53 356 143 349 263 0 12 chr4 44611623 44611703 -139676959 - MLT1I LTR MaLR -328 81 3 333 291 51 0 chr4 44611704 44611821 -139676841 - MIR SINE MIR -59 203 81 2076 164 42 40 chr4 44611821 44612370 -139676292 - MLT2A2 LTR ERVL 0 554 1 25 0 0 0 chr4 44613114 44613139 -139675523 + AT_rich Low_complexity Low_complexity 1 25 0 201 39 0 0 chr4 44614031 44614057 -139674605 + (TG)n Simple_repeat Simple_repeat 1 26 0 822 232 143 15 chr4 44614181 44614509 -139674153 - LTR37B LTR ERV1 0 468 99 399 303 123 50 chr4 44614787 44615544 -139673118 + L1MEd LINE L1 441 1252 -4867 492 182 11 11 chr4 44616455 44616543 -139672119 - MER119 DNA MER1_type 0 583 496 1516 181 0 36 chr4 44617673 44617950 -139670712 - AluJo SINE Alu -33 279 13 2269 144 83 5 chr4 44618008 44618405 -139670257 + MSTA LTR MaLR 1 428 0 7518 196 51 20 chr4 44618405 44620006 -139668656 + MSTA-int LTR MaLR 1 1651 0 2390 118 75 8 chr4 44620008 44620407 -139668255 + MSTA LTR MaLR 3 428 0 1861 197 103 7 chr4 44622326 44622733 -139665929 - Tigger2 DNA MER2_type 0 2718 2273 375 214 0 0 chr4 44622722 44622792 -139665870 + MER8 DNA MER2_type 170 239 0 * 23 68 0 0 chr4 44623570 44623614 -139665048 + AT_rich Low_complexity Low_complexity 1 44 0 352 331 85 87 chr4 44624061 44624120 -139664542 - L2 LINE L2 -481 2833 2775 2764 13 0 0 chr4 44624120 44624423 -139664239 - AluY SINE Alu -8 303 1 352 331 85 87 chr4 44624423 44625072 -139663590 - L2 LINE L2 -539 2775 2127 5697 146 23 32 chr4 44625351 44626430 -139662232 - MER11C LTR ERVK 0 1071 3 351 290 22 40 chr4 44626606 44626770 -139661892 - MIR SINE MIR -58 204 37 249 241 19 0 chr4 44626972 44627026 -139661636 - L2 LINE L2 -52 3261 3207 208 231 31 31 chr4 44627915 44627980 -139660682 + CT-rich Low_complexity Low_complexity 4 68 0 26 30 0 0 chr4 44630284 44630317 -139658345 + AT_rich Low_complexity Low_complexity 1 33 0 237 239 142 68 chr4 44630458 44630634 -139658028 - MER5A DNA MER1_type 0 189 1 1641 126 45 29 chr4 44630663 44630979 -139657683 - THE1B LTR MaLR 0 355 2 402 289 51 26 chr4 44631018 44631174 -139657488 - MER5B DNA MER1_type -16 162 3 237 159 0 0 chr4 44632362 44632406 -139656256 + CT-rich Low_complexity Low_complexity 3 46 0 21 0 0 0 chr4 44632734 44632755 -139655907 + AT_rich Low_complexity Low_complexity 1 21 0 203 375 92 0 chr4 44633080 44633200 -139655462 - L2 LINE L2 -21 3251 3121 249 214 0 18 chr4 44633207 44633263 -139655399 + L2 LINE L2 3153 3207 -65 22 70 0 0 chr4 44633999 44634042 -139654620 + AT_rich Low_complexity Low_complexity 1 43 0 184 114 0 29 chr4 44634385 44634420 -139654242 - L2 LINE L2 -567 2747 2714 302 308 0 0 chr4 44634733 44634798 -139653864 + MER81 DNA DNA 6 70 -44 1197 267 76 60 chr4 44635032 44635262 -139653400 - MER90 LTR ERV1 0 575 350 951 256 16 72 chr4 44635262 44635649 -139653013 + MLT1A1 LTR MaLR 1 365 0 1197 267 76 60 chr4 44635649 44635984 -139652678 - MER90 LTR ERV1 -225 350 1 297 368 0 0 chr4 44636394 44636508 -139652154 - L2 LINE L2 -1983 1331 1218 377 291 95 34 chr4 44636696 44636875 -139651787 + MIR SINE MIR 23 212 -50 420 291 7 40 chr4 44636961 44637109 -139651553 + MER77 LTR ERV1 54 196 -409 * 636 247 79 104 chr4 44637083 44637544 -139651118 + MER77 LTR ERV1 98 554 -51 401 378 17 52 chr4 44637801 44638148 -139650514 + L2 LINE L2 2631 2965 -349 239 222 69 0 chr4 44638236 44638308 -139650354 + (TGAA)n Simple_repeat Simple_repeat 1 77 0 26 74 0 0 chr4 44638953 44639007 -139649655 + AT_rich Low_complexity Low_complexity 1 54 0 22 35 0 0 chr4 44639332 44639361 -139649301 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr4 44639391 44639420 -139649242 + AT_rich Low_complexity Low_complexity 1 29 0 3098 146 10 2 chr4 44639688 44640201 -139648461 - L1PA15 LINE L1 -1 6164 5648 1567 221 3 3 chr4 44640208 44640566 -139648096 - L1PA13 LINE L1 -1730 5067 4710 1157 172 50 23 chr4 44640714 44640975 -139647687 + THE1C LTR MaLR 108 375 0 2945 191 3 14 chr4 44640976 44641552 -139647110 + THE1C-int LTR MaLR 2 571 -1080 4096 157 10 16 chr4 44641561 44642244 -139646418 + THE1C-int LTR MaLR 895 1573 -7 1579 174 54 64 chr4 44642244 44642617 -139646045 + THE1C LTR MaLR 7 375 0 8330 249 43 17 chr4 44642617 44644565 -139644097 - L1PA13 LINE L1 -2083 4714 2819 207 0 0 0 chr4 44644565 44644588 -139644074 + (TG)n Simple_repeat Simple_repeat 1 23 0 8330 249 43 17 chr4 44644588 44644602 -139644060 - L1PA13 LINE L1 -3978 2819 2807 2025 130 10 7 chr4 44644602 44644901 -139643761 - AluSx SINE Alu -10 302 3 8330 249 43 17 chr4 44644901 44646241 -139642421 - L1PA13 LINE L1 -3990 2807 1283 416 280 119 82 chr4 44646573 44646927 -139641735 - L2 LINE L2 -4 3309 2943 540 291 108 18 chr4 44647139 44647362 -139641300 + MIR SINE MIR 20 262 0 210 158 0 0 chr4 44647389 44647427 -139641235 + (TTA)n Simple_repeat Simple_repeat 3 40 0 18055 37 1 0 chr4 44647468 44650440 -139638222 + L1PA3 LINE L1 3176 6152 -3 19752 47 5 1 chr4 44650736 44653261 -139635401 - L1P LINE L1 -836 5310 2776 665 241 6 19 chr4 44653361 44653523 -139635139 - MER34 LTR ERV1 -372 170 11 2384 89 0 19 chr4 44654166 44654480 -139634182 + AluSg SINE Alu 1 308 -2 347 261 9 118 chr4 44654942 44655153 -139633509 - MIR SINE MIR -7 255 68 2029 133 14 0 chr4 44655370 44655663 -139632999 - AluSx SINE Alu -12 300 4 22 56 0 0 chr4 44656127 44656163 -139632499 + AT_rich Low_complexity Low_complexity 1 36 0 366 248 25 8 chr4 44656552 44656673 -139631989 - L1ME3A LINE L1 -316 5854 5732 275 275 18 9 chr4 44656714 44656823 -139631839 - L1ME3A LINE L1 -1559 4587 4478 214 224 41 0 chr4 44657248 44657297 -139631365 + GA-rich Low_complexity Low_complexity 1 51 0 274 374 98 6 chr4 44658495 44658669 -139629993 - MIR SINE MIR -14 248 59 730 231 34 130 chr4 44658730 44659085 -139629577 - MLT1A1 LTR MaLR -44 321 1 6061 237 87 31 chr4 44659091 44660726 -139627936 - MLT1A1-int LTR MaLR -7 1728 2 710 256 133 50 chr4 44660727 44661110 -139627552 - MSTC LTR MaLR -13 415 1 2191 127 0 0 chr4 44661538 44661846 -139626816 - AluSx SINE Alu -2 310 3 5932 217 68 49 chr4 44662252 44664544 -139624118 + L1MB3 LINE L1 3038 5410 -773 2185 104 3 0 chr4 44664544 44664831 -139623831 + AluSp SINE Alu 1 288 -25 5932 217 68 49 chr4 44664831 44665560 -139623102 + L1MB3 LINE L1 5410 6124 -59 279 273 67 47 chr4 44666033 44666183 -139622479 - L2 LINE L2 -55 3258 3106 1807 243 94 24 chr4 44666983 44667284 -139621378 + MER21B LTR ERV1 12 291 -572 189 0 0 0 chr4 44667284 44667305 -139621357 + (CCA)n Simple_repeat Simple_repeat 1 21 0 1807 243 94 24 chr4 44667305 44667671 -139620991 + MER21B LTR ERV1 291 794 -69 463 331 24 0 chr4 44667988 44668157 -139620505 - MER5B DNA MER1_type 0 178 6 7463 43 0 0 chr4 44668547 44669841 -139618821 - L1PA5 LINE L1 0 6154 4861 14515 55 5 0 chr4 44669841 44671700 -139616962 + L1PA5 LINE L1 3022 4890 -1256 193 342 171 8 chr4 44671947 44672064 -139616598 - L2 LINE L2 -16 3297 3162 2137 109 3 29 chr4 44672382 44672693 -139615969 + AluSx SINE Alu 6 308 -4 362 221 35 18 chr4 44672930 44673043 -139615619 - Charlie1a DNA MER1_type 0 1455 1341 853 228 0 0 chr4 44673089 44673282 -139615380 - L1P LINE L1 -1007 5139 4947 2974 226 45 28 chr4 44673316 44674226 -139614436 - Charlie1a DNA MER1_type -112 1343 418 661 287 22 0 chr4 44674234 44674415 -139614247 - Charlie1a DNA MER1_type -1259 196 12 1070 229 119 21 chr4 44674502 44674839 -139613823 + MLT1A2 LTR MaLR 1 370 -4 22 0 0 0 chr4 44674957 44674979 -139613683 + AT_rich Low_complexity Low_complexity 1 22 0 210 430 0 0 chr4 44675275 44675375 -139613287 - L2 LINE L2 -24 3289 3190 331 335 61 6 chr4 44676893 44677057 -139611605 - MIR SINE MIR -74 188 16 24 0 0 0 chr4 44677272 44677296 -139611366 + AT_rich Low_complexity Low_complexity 1 24 0 4305 132 34 18 chr4 44677296 44677310 -139611352 - L1MA3 LINE L1 -2 6303 6291 2144 123 0 10 chr4 44677310 44677618 -139611044 + AluSq SINE Alu 1 305 -8 4305 132 34 18 chr4 44677618 44678371 -139610291 - L1MA3 LINE L1 -14 6291 5524 13578 54 15 0 chr4 44678471 44680574 -139608088 + L1P2 LINE L1 3638 5774 -380 26591 78 2 3 chr4 44680674 44684226 -139604436 - L1P LINE L1 -2585 3561 11 305 238 12 12 chr4 44684234 44684314 -139604348 + MER39 LTR ERV1 628 707 0 23 0 0 0 chr4 44684435 44684458 -139604204 + AT_rich Low_complexity Low_complexity 1 23 0 385 347 37 11 chr4 44685197 44685387 -139603275 - L3 LINE CR1 -115 1462 1268 210 143 0 0 chr4 44686504 44686539 -139602123 + (TA)n Simple_repeat Simple_repeat 2 36 0 503 118 12 0 chr4 44686647 44686732 -139601930 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 1745 136 80 0 chr4 44686734 44687021 -139601641 - AluY SINE Alu 0 311 2 1222 239 51 27 chr4 44688258 44688593 -139600069 - MER82 DNA MER2_type -6 647 305 3939 143 48 63 chr4 44688602 44689393 -139599269 - LTR1 LTR ERV1 0 785 7 16757 159 36 20 chr4 44689406 44692384 -139596278 - HUERS-P2 LTR ERV1 0 3088 1 3810 133 54 83 chr4 44692402 44693196 -139595466 - LTR1 LTR ERV1 -14 771 1 1394 191 58 0 chr4 44693202 44693479 -139595183 - MER82 DNA MER2_type -360 293 1 27 62 0 0 chr4 44693634 44693682 -139594980 + AT_rich Low_complexity Low_complexity 1 48 0 1572 187 111 48 chr4 44694336 44694773 -139593889 - MER31A LTR ERV1 -4 539 1 204 301 233 0 chr4 44696239 44696342 -139592320 + MIR SINE MIR 50 176 -86 557 313 91 0 chr4 44696342 44696550 -139592112 + MIR SINE MIR 15 241 -21 967 253 107 30 chr4 44696712 44697076 -139591586 - MER39 LTR ERV1 -87 620 102 248 196 0 0 chr4 44697071 44697117 -139591545 - MER34 LTR ERV1 -496 46 1 * 293 170 0 0 chr4 44697190 44697237 -139591425 - MER34-int LTR ERV1 -166 6165 6119 635 208 26 26 chr4 44697242 44697396 -139591266 + MER39 LTR ERV1 554 707 0 201 343 152 0 chr4 44697491 44697590 -139591072 - L2 LINE L2 0 3313 3200 229 314 40 65 chr4 44697660 44697784 -139590878 - MIR SINE MIR -122 140 20 30 0 0 0 chr4 44697974 44698004 -139590658 + AT_rich Low_complexity Low_complexity 1 30 0 201 39 0 0 chr4 44698219 44698245 -139590417 + (TATG)n Simple_repeat Simple_repeat 3 28 0 192 341 114 42 chr4 44699156 44699323 -139589339 - L2 LINE L2 -584 2730 2552 283 246 87 8 chr4 44699450 44699576 -139589086 + L1MC1 LINE L1 2178 2313 -4083 2291 96 13 0 chr4 44700230 44700533 -139588129 + AluSg SINE Alu 1 307 -3 5464 209 28 5 chr4 44700594 44702065 -139586597 + L1MC1 LINE L1 4899 6401 -1 1418 269 69 22 chr4 44703681 44704186 -139584476 + L1MC4a LINE L1 5416 5944 -1864 675 111 0 10 chr4 44704221 44704320 -139584342 + MER4A LTR ERV1 1 98 -566 2323 64 0 0 chr4 44704334 44704651 -139584011 + AluY SINE Alu 1 317 0 1081 146 9 55 chr4 44704651 44705026 -139583636 + MER4B LTR ERV1 264 609 -1 30 27 0 0 chr4 44705280 44705317 -139583345 + AT_rich Low_complexity Low_complexity 1 37 0 1275 156 10 51 chr4 44705350 44705639 -139583023 - MER1B DNA MER1_type 0 339 1 799 278 95 14 chr4 44705641 44705925 -139582737 - MLT1I LTR MaLR -18 391 85 26 64 0 0 chr4 44707352 44707399 -139581263 + AT_rich Low_complexity Low_complexity 1 47 0 835 74 67 0 chr4 44707646 44707795 -139580867 + CT-rich Low_complexity Low_complexity 5 163 0 4889 233 40 60 chr4 44707837 44708116 -139580546 - L1M4 LINE L1 -1194 4952 4669 3331 39 2 2 chr4 44708116 44708523 -139580139 - L1PA3 LINE L1 -3 6152 5746 4889 233 40 60 chr4 44708523 44709490 -139579172 - L1M4 LINE L1 -1477 4669 3749 1875 147 3 0 chr4 44709490 44709782 -139578880 - AluSx SINE Alu -19 293 1 4889 233 40 60 chr4 44709782 44710310 -139578352 - L1M4 LINE L1 -2397 3749 3212 461 234 48 73 chr4 44710301 44710656 -139578006 - L1MEc LINE L1 -3965 2431 2086 * 580 291 134 26 chr4 44710782 44711151 -139577511 - L2 LINE L2 -307 3006 2594 344 279 133 42 chr4 44712856 44713021 -139575641 - MIR SINE MIR -49 213 34 2399 63 7 3 chr4 44713249 44713551 -139575111 - AluY SINE Alu -8 303 1 204 234 156 0 chr4 44713608 44713685 -139574977 + MIR SINE MIR 124 212 -50 1227 168 9 5 chr4 44713705 44713919 -139574743 - L1PB3 LINE L1 -1 6153 5939 660 324 37 4 chr4 44714767 44715008 -139573654 - MIR SINE MIR -13 249 1 995 284 46 5 chr4 44716791 44717161 -139571501 + L1ME2 LINE L1 4709 5093 -1053 1885 156 0 29 chr4 44717180 44717527 -139571135 - MER1B DNA MER1_type 0 337 1 1849 243 66 10 chr4 44717538 44718087 -139570575 + L1ME2 LINE L1 5237 5811 -353 1292 266 16 30 chr4 44718092 44718460 -139570202 - MLT1A2 LTR MaLR -11 363 1 896 224 12 29 chr4 44718460 44718706 -139569956 + L1ME2 LINE L1 5805 6046 -118 1742 132 24 17 chr4 44718726 44719015 -139569647 + AluSq SINE Alu 1 291 -22 2148 126 0 0 chr4 44719056 44719357 -139569305 + AluSc SINE Alu 1 301 -8 266 362 117 0 chr4 44719466 44719629 -139569033 + L2 LINE L2 2493 2674 -640 1631 205 35 79 chr4 44719642 44719851 -139568811 - MER67A LTR ERV1 0 543 326 268 42 0 42 chr4 44719860 44719908 -139568754 + (TTAA)n Simple_repeat Simple_repeat 3 48 0 1980 113 7 3 chr4 44719908 44720191 -139568471 - AluY SINE Alu -24 287 1 1631 205 35 79 chr4 44720191 44720464 -139568198 - MER67A LTR ERV1 -217 326 82 555 123 0 0 chr4 44720542 44720623 -139568039 - MER67A LTR ERV1 -462 81 1 849 317 54 46 chr4 44720623 44721247 -139567415 + L2 LINE L2 2682 3312 -1 27 0 0 0 chr4 44722134 44722161 -139566501 + AT_rich Low_complexity Low_complexity 1 27 0 1507 319 114 28 chr4 44723051 44724158 -139564504 + L2 LINE L2 2046 3313 0 258 256 32 80 chr4 44724773 44724898 -139563764 + MLT1I LTR MaLR 37 147 -262 5357 146 15 27 chr4 44725009 44725942 -139562720 + MER49 LTR ERV1 1 922 -1 1302 216 97 40 chr4 44726142 44726448 -139562214 - MLT2B1 LTR ERVL -104 416 88 1864 127 82 23 chr4 44726448 44726802 -139561860 + THE1C LTR MaLR 1 375 0 1302 216 97 40 chr4 44726802 44726824 -139561838 - MLT2B1 LTR ERVL -432 88 69 1822 101 0 0 chr4 44726834 44727072 -139561590 - AluSx SINE Alu -74 238 1 982 284 45 33 chr4 44728978 44729337 -139559325 - MER69 DNA AcHobo -846 380 18 189 323 48 0 chr4 44729354 44729416 -139559246 + MIR SINE MIR 29 93 -115 552 371 75 36 chr4 44730076 44730734 -139557928 + L2 LINE L2 2222 2904 -410 25 31 0 0 chr4 44731548 44731580 -139557082 + AT_rich Low_complexity Low_complexity 1 32 0 370 309 72 80 chr4 44732227 44732641 -139556021 + L1MC/D LINE L1 4502 4912 -1234 261 301 76 43 chr4 44732878 44733154 -139555508 + L1MC/D LINE L1 5311 5595 -2213 4273 76 9 2 chr4 44733164 44733732 -139554930 - L1P LINE L1 -4983 1163 592 351 22 0 0 chr4 44733732 44733778 -139554884 + L1PA6 LINE L1 6108 6153 -1 218 190 0 17 chr4 44733854 44733912 -139554750 + (TA)n Simple_repeat Simple_repeat 1 57 0 42 36 0 0 chr4 44734056 44734112 -139554550 + AT_rich Low_complexity Low_complexity 1 56 0 344 303 84 67 chr4 44734112 44734455 -139554207 - L2 LINE L2 -1477 1837 1489 225 281 135 0 chr4 44734617 44734706 -139553956 - L1MC/D LINE L1 -2294 5514 5414 1376 249 50 42 chr4 44734728 44735229 -139553433 - MLT1D LTR MaLR 0 505 1 965 104 35 6 chr4 44735870 44736043 -139552619 + CT-rich Low_complexity Low_complexity 3 180 0 1878 124 7 11 chr4 44736053 44736328 -139552334 - AluSq SINE Alu -39 274 1 869 252 19 80 chr4 44736332 44736709 -139551953 + LTR37B LTR ERV1 50 403 -65 2740 81 42 104 chr4 44737184 44737666 -139550996 - MLT2A2 LTR ERVL -1 452 1 599 308 106 10 chr4 44737719 44738160 -139550502 - LTR33 LTR ERVL -14 507 1 3653 90 39 8 chr4 44738803 44739338 -139549324 + MER41A LTR ERV1 1 552 -2 748 259 97 23 chr4 44740688 44740997 -139547665 - L1MB7 LINE L1 -41 6143 5812 622 268 82 33 chr4 44741008 44741251 -139547411 + L2 LINE L2 1649 1903 -1411 593 286 162 72 chr4 44741274 44741779 -139546883 + L2 LINE L2 2659 3215 -98 2151 187 78 0 chr4 44741860 44742255 -139546407 - MSTB LTR MaLR 0 426 1 271 288 66 61 chr4 44742392 44742590 -139546072 + MLT1H LTR MaLR 111 309 -240 1403 214 19 3 chr4 44742607 44742976 -139545686 - L1PA16 LINE L1 -751 5395 5021 * 2565 114 11 0 chr4 44742973 44743349 -139545313 + L1PA16 LINE L1 5414 5793 -373 2403 123 0 0 chr4 44743449 44743815 -139544847 + L1PA16 LINE L1 5801 6166 0 24 0 0 0 chr4 44743955 44743979 -139544683 + AT_rich Low_complexity Low_complexity 1 24 0 540 159 0 0 chr4 44744276 44744364 -139544298 + L1PA16 LINE L1 6030 6117 -49 240 86 0 0 chr4 44744489 44744524 -139544138 + (TA)n Simple_repeat Simple_repeat 2 36 0 1703 264 99 69 chr4 44744882 44746108 -139542554 + L1MC4 LINE L1 6690 7951 -91 1612 203 0 3 chr4 44746171 44746461 -139542201 - AluJb SINE Alu -20 292 4 1316 199 37 54 chr4 44746531 44746918 -139541744 + MLT2B3 LTR ERVL 183 554 0 372 256 70 3 chr4 44746927 44747127 -139541535 - LTR37A LTR ERV1 -114 312 38 777 279 86 21 chr4 44747459 44747832 -139540830 - L1MC4a LINE L1 -1600 6208 5812 4576 179 47 23 chr4 44747844 44748534 -139540128 - L1PB4 LINE L1 -3 6153 5481 2133 130 0 0 chr4 44748534 44748834 -139539828 - AluSq SINE Alu -13 300 1 4576 179 47 23 chr4 44748834 44749509 -139539153 - L1PB4 LINE L1 -675 5481 4757 1430 291 60 7 chr4 44749511 44750048 -139538614 - L1MC4a LINE L1 -1989 5819 5255 33 80 0 0 chr4 44750105 44750180 -139538482 + AT_rich Low_complexity Low_complexity 1 75 0 23 92 0 0 chr4 44750232 44750297 -139538365 + AT_rich Low_complexity Low_complexity 1 65 0 208 268 70 84 chr4 44750403 44750545 -139538117 + L2 LINE L2 2712 2851 -463 189 139 0 0 chr4 44750758 44750801 -139537861 + (TA)n Simple_repeat Simple_repeat 2 44 0 843 209 0 13 chr4 44750801 44750954 -139537708 - FRAM SINE Alu -15 151 1 301 305 86 16 chr4 44753699 44753827 -139534835 + MIR SINE MIR 105 241 -21 2896 289 55 46 chr4 44754134 44755912 -139532750 - L1MEc LINE L1 -4484 1797 35 552 364 57 4 chr4 44755979 44756207 -139532455 + MIR SINE MIR 23 262 0 10743 173 24 43 chr4 44757186 44760471 -139528191 + L1MA6 LINE L1 1670 4896 -2669 4193 159 15 15 chr4 44760472 44761345 -139527317 + L1MA6 LINE L1 5989 6862 -743 1405 305 40 6 chr4 44761795 44762267 -139526395 + ERVL LTR ERVL 4745 5232 -532 462 202 20 10 chr4 44762269 44762368 -139526294 + L1MA6 LINE L1 7307 7406 -313 265 214 14 14 chr4 44762368 44762438 -139526224 + ERVL-F LTR ERVL 5584 5653 -1 251 309 27 40 chr4 44762438 44762587 -139526075 + MLT2F LTR ERVL 1 147 -516 861 253 7 90 chr4 44762831 44763120 -139525542 + MLT2F LTR ERVL 397 661 -2 565 319 70 12 chr4 44763196 44763437 -139525225 - L2 LINE L2 -364 2950 2696 2203 87 0 3 chr4 44763913 44764200 -139524462 + AluSx SINE Alu 6 291 -21 460 291 85 60 chr4 44764210 44764725 -139523937 + L1M4b LINE L1 1374 2053 -4894 614 289 151 16 chr4 44764725 44765029 -139523633 - L2 LINE L2 -611 2703 2359 252 122 0 0 chr4 44765609 44765650 -139523012 + (TG)n Simple_repeat Simple_repeat 2 42 0 673 240 162 0 chr4 44766648 44766827 -139521835 - MER3 DNA MER1_type 0 209 2 1219 213 0 8 chr4 44767929 44768178 -139520484 - 7SLRNA srpRNA srpRNA -4 316 70 1197 201 35 127 chr4 44769984 44770386 -139518276 - MLT1A1 LTR MaLR 0 365 1 2017 121 0 0 chr4 44770655 44770935 -139517727 + AluSx SINE Alu 1 280 -32 234 0 0 0 chr4 44770936 44770962 -139517700 + (CAA)n Simple_repeat Simple_repeat 2 27 0 19179 68 12 5 chr4 44771019 44774386 -139514276 + L1PA6 LINE L1 2776 6149 -5 2199 121 0 9 chr4 44774393 44774708 -139513954 + AluSq SINE Alu 1 312 -1 23 0 0 0 chr4 44775167 44775190 -139513472 + AT_rich Low_complexity Low_complexity 1 23 0 1844 196 14 6 chr4 44777413 44777775 -139510887 + MLT1A1 LTR MaLR 1 365 0 659 344 90 19 chr4 44777987 44778353 -139510309 + MLT1H LTR MaLR 142 533 -16 2325 176 7 18 chr4 44778861 44779299 -139509363 + Tigger2a DNA MER2_type 2 434 0 1527 184 9 43 chr4 44779855 44780181 -139508481 - LTR62 LTR ERVK -404 315 1 2295 106 0 0 chr4 44780524 44780836 -139507826 - AluSx SINE Alu 0 312 1 345 24 0 0 chr4 44781728 44781770 -139506892 + (TTA)n Simple_repeat Simple_repeat 1 42 0 2034 214 89 39 chr4 44781772 44782291 -139506371 - MER74A LTR ERVL -11 547 3 265 296 30 53 chr4 44782616 44782748 -139505914 + MIR SINE MIR 88 216 -46 2075 143 22 22 chr4 44783046 44783409 -139505253 + THE1B LTR MaLR 2 364 0 4747 100 54 66 chr4 44783814 44785270 -139503392 - pTR5 LTR ERV1 0 2606 1524 494 299 35 17 chr4 44785305 44785479 -139503183 - MIR SINE MIR -74 188 12 180 0 0 0 chr4 44785662 44785682 -139502980 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 227 114 23 0 chr4 44786884 44786928 -139501734 + (TG)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr4 44787507 44787528 -139501134 + AT_rich Low_complexity Low_complexity 1 21 0 51 58 0 0 chr4 44788818 44788904 -139499758 + AT_rich Low_complexity Low_complexity 1 86 0 203 353 70 39 chr4 44789204 44789273 -139499389 + L2 LINE L2 2538 2603 -711 2226 142 17 3 chr4 44789273 44789632 -139499030 + THE1B LTR MaLR 1 364 0 203 353 70 39 chr4 44789632 44789718 -139498944 + L2 LINE L2 2603 2698 -616 4677 239 50 23 chr4 44789719 44792340 -139496322 + L1MCa LINE L1 5 3962 -2464 2257 144 42 31 chr4 44792345 44792574 -139496088 - L1M1 LINE L1 -590 5713 5488 1747 131 0 0 chr4 44792574 44792818 -139495844 - AluSx SINE Alu -23 289 46 2257 144 42 31 chr4 44792818 44793186 -139495476 - L1M1 LINE L1 -815 5488 5111 3095 184 34 5 chr4 44793186 44793797 -139494865 + L1MC1 LINE L1 5696 6328 -5 21 0 0 0 chr4 44793797 44793818 -139494844 + AT_rich Low_complexity Low_complexity 1 21 0 204 362 0 0 chr4 44794994 44795052 -139493610 + L2 LINE L2 3200 3257 -15 428 205 26 86 chr4 44795067 44795184 -139493478 + FLAM_C SINE Alu 14 123 -20 330 364 146 5 chr4 44795273 44795493 -139493169 + MIR SINE MIR 2 252 -10 2294 144 41 3 chr4 44795750 44796138 -139492524 + MER57A LTR ERV1 1 403 0 2903 180 18 76 chr4 44797459 44797778 -139490884 - LTR51 LTR ERV1 -2 669 412 1862 159 3 10 chr4 44797778 44798080 -139490582 + AluSx SINE Alu 1 300 -12 2903 180 18 76 chr4 44798080 44798470 -139490192 - LTR51 LTR ERV1 -259 412 1 1241 107 6 0 chr4 44798777 44798954 -139489708 - MER4E LTR ERV1 0 766 589 255 361 33 0 chr4 44798967 44799089 -139489573 + MIR SINE MIR 101 226 -36 1972 152 7 3 chr4 44799293 44799595 -139489067 - AluSx SINE Alu -9 303 1 3474 197 28 34 chr4 44799995 44800707 -139487955 - MER50 LTR ERV1 -26 708 1 252 0 0 0 chr4 44801093 44801121 -139487541 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1844 129 0 45 chr4 44801352 44801663 -139486999 - AluSc SINE Alu -10 299 3 445 296 127 33 chr4 44802085 44802298 -139486364 + MIR SINE MIR 30 262 0 1662 121 16 77 chr4 44802337 44802708 -139485954 - MER4A LTR ERV1 -2 662 256 540 141 0 11 chr4 44802709 44802801 -139485861 - MER4A LTR ERV1 -572 92 2 4105 181 50 15 chr4 44803706 44804566 -139484096 - L1MC1 LINE L1 -18 6315 5426 223 222 37 0 chr4 44804751 44804805 -139483857 - MIR SINE MIR -14 248 193 318 329 0 0 chr4 44804854 44804930 -139483732 + MIR SINE MIR 14 89 -173 993 240 106 34 chr4 44804930 44805317 -139483345 + MLT1C LTR MaLR 1 415 -52 21 0 0 0 chr4 44805579 44805600 -139483062 + AT_rich Low_complexity Low_complexity 1 21 0 428 344 58 22 chr4 44805651 44805875 -139482787 - MIR SINE MIR -21 241 10 374 329 193 26 chr4 44806158 44806547 -139482115 + L3 LINE CR1 968 1421 -156 2452 58 0 3 chr4 44806629 44806937 -139481725 + AluY SINE Alu 1 307 -4 300 309 181 7 chr4 44807597 44807746 -139480916 + MER5A DNA MER1_type 9 183 -6 445 264 90 14 chr4 44807849 44807993 -139480669 - L2 LINE L2 0 3313 3159 3001 243 43 37 chr4 44808003 44808878 -139479784 - L1MC1 LINE L1 -900 5246 4378 195 42 0 0 chr4 44808878 44808902 -139479760 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2314 53 0 3 chr4 44808904 44809187 -139479475 - AluY SINE Alu -29 282 1 3001 243 43 37 chr4 44809187 44809434 -139479228 - L1MC1 LINE L1 -1768 4378 4114 1817 279 81 11 chr4 44809447 44810165 -139478497 + L1ME2 LINE L1 5280 6047 -117 489 77 44 0 chr4 44810191 44810282 -139478380 + (TCTA)n Simple_repeat Simple_repeat 1 95 0 389 311 57 26 chr4 44810497 44810690 -139477972 + L2 LINE L2 2242 2440 -874 1813 186 44 26 chr4 44810743 44811279 -139477383 - MLT2A2 LTR ERVL -10 544 1 250 294 29 0 chr4 44811547 44811615 -139477047 + L2 LINE L2 3244 3313 0 192 381 0 12 chr4 44811616 44811700 -139476962 + L2 LINE L2 2715 2797 -517 413 248 79 10 chr4 44812446 44812547 -139476115 + MIR SINE MIR 5 112 -150 22 56 0 0 chr4 44813383 44813419 -139475243 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr4 44813791 44813812 -139474850 + AT_rich Low_complexity Low_complexity 1 21 0 469 304 42 57 chr4 44813950 44814233 -139474429 - L1MC4a LINE L1 -1944 5864 5586 2244 49 56 14 chr4 44814932 44815220 -139473442 - AluY SINE Alu -11 300 1 3947 105 10 0 chr4 44815598 44816188 -139472474 - L1PA8 LINE L1 -847 5299 4704 6140 68 17 1 chr4 44816188 44817009 -139471653 + L1PA8 LINE L1 5325 6159 -13 235 235 86 3 chr4 44817055 44817150 -139471512 - MLT1J2 LTR MaLR -310 177 67 233 361 109 0 chr4 44818122 44818241 -139470421 + L2 LINE L2 3137 3268 -4 572 225 31 0 chr4 44818674 44818803 -139469859 - MER3 DNA MER1_type 0 209 77 5411 109 9 42 chr4 44818807 44818938 -139469724 - L1PA12 LINE L1 0 6168 6034 446 0 19 0 chr4 44818938 44818992 -139469670 + (TG)n Simple_repeat Simple_repeat 2 56 0 1916 105 12 0 chr4 44818994 44819251 -139469411 - AluSq SINE Alu -53 260 1 5411 109 9 42 chr4 44819251 44819997 -139468665 - L1PA12 LINE L1 -135 6033 5317 10507 156 36 11 chr4 44820185 44822101 -139466561 - L1PA12 LINE L1 -873 5273 3310 234 288 0 0 chr4 44822111 44822170 -139466492 - MER3 DNA MER1_type -149 60 2 271 341 24 0 chr4 44822714 44822799 -139465863 + L2 LINE L2 1873 1959 -1355 200 434 0 0 chr4 44822919 44823025 -139465637 + L2 LINE L2 3200 3305 -8 222 333 21 21 chr4 44823541 44823634 -139465028 - L2 LINE L2 -254 3059 2967 302 119 0 0 chr4 44823641 44823683 -139464979 + MLT1A1 LTR MaLR 324 365 0 240 349 136 39 chr4 44823765 44824103 -139464559 - L2 LINE L2 -654 2660 2290 201 207 37 0 chr4 44824111 44824193 -139464469 + (TA)n Simple_repeat Simple_repeat 2 86 0 363 361 137 6 chr4 44824263 44824576 -139464086 - L2 LINE L2 -1044 2270 1917 614 322 198 35 chr4 44824577 44825465 -139463197 - L2 LINE L2 -1734 1580 548 1353 183 107 69 chr4 44825783 44826205 -139462457 - LTR21B LTR ERV1 0 438 1 2171 143 30 16 chr4 44826716 44827086 -139461576 + THE1C LTR MaLR 1 375 0 1837 169 50 83 chr4 44828243 44828686 -139459976 + MSTA LTR MaLR 1 428 0 6070 231 31 40 chr4 44828688 44829131 -139459531 + MLT1J1-int LTR MaLR 2 447 -1204 1426 234 3 7 chr4 44829131 44829434 -139459228 - AluJb SINE Alu 0 302 1 6070 231 31 40 chr4 44829434 44830739 -139457923 + MLT1J1-int LTR MaLR 447 1651 0 1920 189 58 19 chr4 44830739 44831151 -139457511 + MSTA LTR MaLR 1 428 0 350 304 27 0 chr4 44831254 44831366 -139457296 - MIR SINE MIR -6 256 142 487 343 36 36 chr4 44831564 44831867 -139456795 + MLT1J1 LTR MaLR 6 308 -138 7626 118 8 3 chr4 44832357 44833530 -139455132 + L1PA8 LINE L1 4138 5316 -830 * 7885 17 0 0 chr4 44833520 44834996 -139453666 + L1HS LINE L1 4680 6155 0 203 171 0 0 chr4 44835002 44835043 -139453619 + A-rich Low_complexity Low_complexity 1 41 0 6558 72 0 0 chr4 44835097 44835960 -139452702 + L1PA8 LINE L1 5293 6155 -17 267 92 46 0 chr4 44835960 44836025 -139452637 + (TA)n Simple_repeat Simple_repeat 1 68 0 1742 242 73 42 chr4 44836061 44836664 -139451998 - MLT1E3 LTR MaLR 0 624 3 414 0 0 0 chr4 44837853 44837899 -139450763 + (TG)n Simple_repeat Simple_repeat 2 47 0 183 42 0 0 chr4 44838247 44838271 -139450391 + (CAA)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr4 44838492 44838513 -139450149 + AT_rich Low_complexity Low_complexity 1 21 0 315 319 86 37 chr4 44838539 44838702 -139449960 + MIR SINE MIR 17 187 -75 255 372 33 8 chr4 44838704 44838825 -139449837 - L2 LINE L2 -2 3311 3188 210 333 0 0 chr4 44838824 44838893 -139449769 + MIR SINE MIR 182 250 -12 * 2024 99 51 0 chr4 44839025 44839317 -139449345 + AluSp SINE Alu 3 309 -4 4186 103 2 13 chr4 44839676 44840288 -139448374 - L1PA13 LINE L1 -5 6158 5554 334 318 78 51 chr4 44840463 44840680 -139447982 + L2 LINE L2 2833 3055 -258 1050 121 17 0 chr4 44841347 44841520 -139447142 + L1MA4A LINE L1 6119 6294 -9 1838 130 61 66 chr4 44841760 44842053 -139446609 + THE1C LTR MaLR 1 293 -82 2274 117 0 0 chr4 44842053 44842360 -139446302 - AluSc SINE Alu -2 307 1 1838 130 61 66 chr4 44842360 44842443 -139446219 + THE1C LTR MaLR 293 375 0 254 318 23 78 chr4 44842524 44842653 -139446009 + L2 LINE L2 3151 3272 0 436 324 83 17 chr4 44842683 44842924 -139445738 - MIR SINE MIR 0 262 6 210 71 0 0 chr4 44843029 44843057 -139445605 + (TA)n Simple_repeat Simple_repeat 2 29 0 441 365 97 32 chr4 44843060 44843495 -139445167 + L3 LINE CR1 1094 1556 -21 542 350 58 63 chr4 44843823 44844660 -139444002 + L2 LINE L2 2438 3265 -7 340 221 26 0 chr4 44845227 44845304 -139443358 - MLT1G1 LTR MaLR -516 79 1 415 322 102 21 chr4 44845849 44846085 -139442577 + MIR SINE MIR 8 262 0 254 345 42 14 chr4 44846233 44846375 -139442287 - MIR SINE MIR -110 152 7 23 0 0 0 chr4 44847669 44847692 -139440970 + AT_rich Low_complexity Low_complexity 1 23 0 14550 175 19 32 chr4 44847766 44851191 -139437471 - L1MA1 LINE L1 0 6582 3195 2015 162 115 5 chr4 44851191 44851573 -139437089 + MSTA LTR MaLR 5 428 0 14550 175 19 32 chr4 44851573 44853107 -139435555 - L1MA1 LINE L1 -3387 3195 1643 374 53 53 0 chr4 44853110 44853167 -139435495 - L1M1 LINE L1 -4619 2946 2887 324 41 61 0 chr4 44853167 44853216 -139435446 - L1M1 LINE L1 -4622 2943 2892 334 58 58 0 chr4 44853218 44853270 -139435392 - L1M1 LINE L1 -4619 2946 2892 13803 187 67 21 chr4 44853272 44856069 -139432593 - L1M1 LINE L1 -4619 2946 22 2047 130 13 0 chr4 44856292 44856592 -139432070 + AluSx SINE Alu 1 304 -8 210 333 62 0 chr4 44857892 44857973 -139430689 - L2 LINE L2 -39 3233 3148 231 340 67 20 chr4 44858986 44859136 -139429526 + L3 LINE CR1 1221 1377 -200 22 35 0 0 chr4 44859442 44859471 -139429191 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4 44859706 44859729 -139428933 + AT_rich Low_complexity Low_complexity 1 23 0 235 260 208 0 chr4 44861825 44861902 -139426760 + MIR SINE MIR 50 142 -120 31 44 0 0 chr4 44862278 44862323 -139426339 + AT_rich Low_complexity Low_complexity 1 45 0 521 194 47 76 chr4 44862368 44862579 -139426083 + L1MC5 LINE L1 7722 7926 -35 2384 66 20 0 chr4 44863526 44863828 -139424834 + AluY SINE Alu 1 308 -3 407 262 151 0 chr4 44863834 44864006 -139424656 + L1M4 LINE L1 2731 2928 -3218 1630 252 40 17 chr4 44864024 44864496 -139424166 - L1MD2 LINE L1 -4 6355 5873 799 214 23 23 chr4 44864501 44864716 -139423946 - L1MD2 LINE L1 -595 5764 5550 * 976 254 101 63 chr4 44864714 44865509 -139423153 - L1MDa LINE L1 -3893 2513 1777 1145 176 96 35 chr4 44865543 44865855 -139422807 - L1MDa LINE L1 -4756 1650 1320 1101 221 55 17 chr4 44865865 44866303 -139422359 - MLT1D LTR MaLR -5 500 12 1620 273 39 84 chr4 44866310 44866756 -139421906 - MLT1D-int LTR MaLR 0 1371 970 2395 102 0 0 chr4 44866756 44867069 -139421593 - AluSp SINE Alu 0 313 1 1620 273 39 84 chr4 44867069 44867363 -139421299 - MLT1D-int LTR MaLR -401 970 664 1996 254 31 44 chr4 44867430 44868084 -139420578 - MLT1D-int LTR MaLR -726 645 1 1641 261 50 3 chr4 44868193 44868573 -139420089 - MLT1D LTR MaLR -107 398 1 295 203 29 14 chr4 44868634 44868703 -139419959 - L1MDa LINE L1 -5096 1313 1244 * 942 278 31 0 chr4 44868700 44868927 -139419735 - L1MDa LINE L1 -6143 266 33 257 150 0 0 chr4 44868944 44868984 -139419678 + MSTC LTR MaLR 2 41 -387 28 0 0 0 chr4 44869181 44869209 -139419453 + AT_rich Low_complexity Low_complexity 1 28 0 293 250 22 43 chr4 44870448 44870540 -139418122 - LTR33 LTR ERVL -1 520 431 255 200 0 0 chr4 44870546 44870591 -139418071 - MER69 DNA AcHobo -121 56 12 372 191 68 0 chr4 44870646 44870793 -139417869 + (TA)n Simple_repeat Simple_repeat 2 158 0 244 174 81 0 chr4 44870850 44870936 -139417726 + (TA)n Simple_repeat Simple_repeat 2 94 0 257 50 99 30 chr4 44870981 44871082 -139417580 + (TA)n Simple_repeat Simple_repeat 2 109 0 276 188 81 7 chr4 44871111 44871260 -139417402 + (TA)n Simple_repeat Simple_repeat 1 160 0 4185 241 47 17 chr4 44871361 44871557 -139417105 - L1PA13 LINE L1 -3911 2886 2697 207 0 0 0 chr4 44871557 44871580 -139417082 + (TG)n Simple_repeat Simple_repeat 1 23 0 4185 241 47 17 chr4 44871580 44871594 -139417068 - L1PA13 LINE L1 -4100 2697 2685 1997 130 10 7 chr4 44871594 44871893 -139416769 - AluSx SINE Alu -10 302 3 4185 241 47 17 chr4 44871893 44873233 -139415429 - L1PA13 LINE L1 -4112 2685 1283 430 283 122 82 chr4 44873565 44873918 -139414744 - L2 LINE L2 -4 3309 2943 545 291 108 18 chr4 44874130 44874353 -139414309 + MIR SINE MIR 20 262 0 210 158 0 0 chr4 44874380 44874418 -139414244 + (TTA)n Simple_repeat Simple_repeat 3 40 0 13611 46 5 0 chr4 44874459 44876165 -139412497 + L1P LINE L1 3176 4890 -1256 199 342 171 8 chr4 44876412 44876529 -139412133 - L2 LINE L2 -16 3297 3162 2122 109 3 29 chr4 44876847 44877159 -139411503 + AluSx SINE Alu 6 309 -3 369 221 35 18 chr4 44877396 44877509 -139411153 - Charlie1a DNA MER1_type 0 1455 1341 856 228 0 0 chr4 44877555 44877748 -139410914 - L1P LINE L1 -1007 5139 4947 3057 226 45 28 chr4 44877782 44878692 -139409970 - Charlie1a DNA MER1_type -112 1343 418 671 287 22 0 chr4 44878700 44878881 -139409781 - Charlie1a DNA MER1_type -1259 196 12 1063 229 119 21 chr4 44878968 44879305 -139409357 + MLT1A2 LTR MaLR 1 370 -4 22 0 0 0 chr4 44879423 44879445 -139409217 + AT_rich Low_complexity Low_complexity 1 22 0 214 429 0 8 chr4 44879741 44879860 -139408802 - L2 LINE L2 -24 3289 3172 337 335 61 6 chr4 44881358 44881522 -139407140 - MIR SINE MIR -74 188 16 24 0 0 0 chr4 44881737 44881761 -139406901 + AT_rich Low_complexity Low_complexity 1 24 0 13118 190 31 23 chr4 44881761 44881775 -139406887 - L1MA2 LINE L1 -1 7722 7710 2113 126 0 10 chr4 44881775 44882084 -139406578 + AluSq SINE Alu 1 306 -7 13118 190 31 23 chr4 44882084 44883125 -139405537 - L1MA2 LINE L1 -13 7710 6678 2074 152 91 10 chr4 44883125 44883521 -139405141 + MSTA LTR MaLR 1 428 0 13118 190 31 23 chr4 44883521 44885066 -139403596 - L1MA2 LINE L1 -1045 6678 5146 198 71 0 0 chr4 44885066 44885094 -139403568 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 13118 190 31 23 chr4 44885094 44885844 -139402818 - L1MA2 LINE L1 -2577 5146 4403 1952 214 94 4 chr4 44885844 44886311 -139402351 - LTR22 LTR ERVK 0 509 1 13118 190 31 23 chr4 44886311 44888076 -139400586 - L1MA2 LINE L1 -3320 4403 2653 5187 148 9 6 chr4 44888076 44889188 -139399474 - L1PA13 LINE L1 -1 6162 5042 13118 190 31 23 chr4 44889188 44889309 -139399353 - L1MA2 LINE L1 -5070 2653 2534 3031 51 2 10 chr4 44889309 44889702 -139398960 - L1PA5 LINE L1 -1 6153 5764 13118 190 31 23 chr4 44889702 44891843 -139396819 - L1MA2 LINE L1 -5189 2534 11 683 271 33 28 chr4 44892077 44892291 -139396371 + MIR SINE MIR 45 259 -3 195 204 0 0 chr4 44892639 44892683 -139395979 + (CA)n Simple_repeat Simple_repeat 2 45 0 243 358 85 34 chr4 44893572 44893748 -139394914 - L3b LINE CR1 -13 1570 1386 23 54 0 0 chr4 44893762 44893799 -139394863 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr4 44894148 44894169 -139394493 + AT_rich Low_complexity Low_complexity 1 21 0 5929 49 5 0 chr4 44894271 44895005 -139393657 - L1PA4 LINE L1 -11 6144 5407 22616 35 2 0 chr4 44895005 44897798 -139390864 + L1P LINE L1 2622 5420 -734 23 0 0 0 chr4 44898115 44898138 -139390524 + AT_rich Low_complexity Low_complexity 1 23 0 2321 101 0 0 chr4 44901195 44901502 -139387160 - AluSg SINE Alu -3 307 1 23 33 0 0 chr4 44901527 44901557 -139387105 + AT_rich Low_complexity Low_complexity 1 30 0 846 38 19 0 chr4 44901641 44901746 -139386916 + L1PA3 LINE L1 6049 6155 0 30 0 0 0 chr4 44901759 44901789 -139386873 + AT_rich Low_complexity Low_complexity 1 30 0 244 244 12 81 chr4 44903024 44903110 -139385552 - MER116 DNA Mariner 0 80 1 216 200 0 0 chr4 44903238 44903293 -139385369 + (TCTA)n Simple_repeat Simple_repeat 3 57 0 321 82 0 0 chr4 44903343 44903392 -139385270 + (CA)n Simple_repeat Simple_repeat 2 50 0 331 252 92 15 chr4 44903408 44903539 -139385123 - L1MC/D LINE L1 -1981 7246 7106 812 292 50 0 chr4 44903552 44903812 -139384850 - L1MC/D LINE L1 -2163 7064 6792 240 337 35 53 chr4 44903988 44904362 -139384300 - L1MC/D LINE L1 -1059 6506 6140 23 0 0 0 chr4 44904423 44904446 -139384216 + AT_rich Low_complexity Low_complexity 1 23 0 1503 182 37 34 chr4 44904655 44904951 -139383711 - AluJb SINE Alu -15 297 1 541 269 50 114 chr4 44905878 44906353 -139382309 + LTR16A1 LTR ERVL 13 457 0 26 30 0 0 chr4 44907361 44907394 -139381268 + AT_rich Low_complexity Low_complexity 1 33 0 1629 164 4 0 chr4 44907679 44907953 -139380709 + AluSx SINE Alu 1 275 -37 402 21 0 0 chr4 44907959 44908006 -139380656 + (CAAG)n Simple_repeat Simple_repeat 2 48 0 284 162 0 29 chr4 44908026 44908094 -139380568 + GA-rich Low_complexity Low_complexity 3 68 0 185 381 0 0 chr4 44908399 44908462 -139380200 + L2 LINE L2 3004 3066 -247 1575 228 97 3 chr4 44908570 44908951 -139379711 - MLT1C LTR MaLR 0 467 51 261 0 0 0 chr4 44909418 44909447 -139379215 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 484 278 62 0 chr4 44909894 44910056 -139378606 + L1ME1 LINE L1 5989 6160 -6 21 0 0 0 chr4 44910449 44910470 -139378192 + AT_rich Low_complexity Low_complexity 1 21 0 248 155 0 35 chr4 44911083 44911141 -139377521 + C-rich Low_complexity Low_complexity 5 60 0 2385 268 98 36 chr4 44911147 44912411 -139376251 - L1MC/D LINE L1 -2517 5048 3864 1892 171 93 18 chr4 44912411 44912809 -139375853 + MSTA LTR MaLR 1 428 0 2385 268 98 36 chr4 44912809 44913187 -139375475 - L1MC/D LINE L1 -3701 3864 3511 1667 143 207 11 chr4 44913187 44913545 -139375117 - MSTA LTR MaLR 0 428 1 2385 268 98 36 chr4 44913545 44914582 -139374080 - L1MC/D LINE L1 -4054 3511 2175 13438 174 22 6 chr4 44915033 44917469 -139371193 + L1M1 LINE L1 1136 3610 -3955 13897 186 25 35 chr4 44917473 44920276 -139368386 + L1M1 LINE L1 15 2788 -4777 3737 126 59 0 chr4 44920291 44920886 -139367776 + L1PA13 LINE L1 5532 6161 -2 2537 200 65 21 chr4 44920888 44921490 -139367172 + L1M1 LINE L1 3032 3606 -3959 1546 173 14 0 chr4 44921490 44921794 -139366868 + AluSx SINE Alu 1 308 0 2537 200 65 21 chr4 44921794 44922363 -139366299 + L1M1 LINE L1 3606 4257 -3308 7644 22 2 1 chr4 44922379 44924026 -139364636 - L1PA3 LINE L1 -3 6152 4508 3425 61 14 0 chr4 44924026 44924469 -139364193 + L1P LINE L1 4442 4890 -1256 877 152 18 6 chr4 44924929 44925094 -139363568 + L1MB3 LINE L1 6014 6180 -3 23 0 0 0 chr4 44925872 44925895 -139362767 + AT_rich Low_complexity Low_complexity 1 23 0 1744 164 0 35 chr4 44925903 44926214 -139362448 - AluSx SINE Alu -8 304 5 580 124 0 0 chr4 44926277 44926366 -139362296 + AluJ/FRAM SINE Alu 221 309 -3 21 57 0 0 chr4 44926724 44926759 -139361903 + AT_rich Low_complexity Low_complexity 1 35 0 1869 144 3 3 chr4 44928034 44928325 -139360337 + AluSx SINE Alu 3 293 -19 1203 226 155 49 chr4 44929190 44929680 -139358982 + MLT1F LTR MaLR 1 542 0 807 259 57 0 chr4 44929827 44930039 -139358623 + MER58A DNA MER1_type 1 224 0 21 0 0 0 chr4 44930096 44930117 -139358545 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 44930309 44930330 -139358332 + AT_rich Low_complexity Low_complexity 1 21 0 671 189 71 92 chr4 44930584 44930822 -139357840 - MER110A LTR ERV1 -2 466 234 432 302 24 30 chr4 44930929 44931098 -139357564 + L2 LINE L2 3144 3311 -2 22 0 0 0 chr4 44931653 44931675 -139356987 + AT_rich Low_complexity Low_complexity 1 22 0 202 200 156 22 chr4 44931907 44931997 -139356665 + MIR SINE MIR 83 184 -78 1022 253 69 31 chr4 44932430 44932790 -139355872 - MLT1A2 LTR MaLR 0 374 1 180 0 0 0 chr4 44932950 44932970 -139355692 + (CA)n Simple_repeat Simple_repeat 1 20 0 22 35 0 0 chr4 44933934 44933963 -139354699 + AT_rich Low_complexity Low_complexity 1 29 0 1035 194 235 0 chr4 44934026 44934350 -139354312 + L1MA4A LINE L1 5881 6280 -23 24 53 0 0 chr4 44934868 44934906 -139353756 + AT_rich Low_complexity Low_complexity 1 38 0 844 281 38 0 chr4 44935172 44935410 -139353252 + MIR SINE MIR 5 251 -11 213 39 0 0 chr4 44935527 44935553 -139353109 + (CAA)n Simple_repeat Simple_repeat 2 27 0 22 80 0 0 chr4 44936495 44936545 -139352117 + AT_rich Low_complexity Low_complexity 1 50 0 255 31 0 0 chr4 44937610 44937642 -139351020 + (CA)n Simple_repeat Simple_repeat 1 32 0 25 31 0 0 chr4 44937940 44937972 -139350690 + AT_rich Low_complexity Low_complexity 1 32 0 292 357 75 18 chr4 44938417 44938644 -139350018 + MIR SINE MIR 11 250 -12 204 163 0 0 chr4 44938646 44938689 -139349973 + (TG)n Simple_repeat Simple_repeat 2 44 0 27 0 0 0 chr4 44939168 44939195 -139349467 + AT_rich Low_complexity Low_complexity 1 27 0 940 141 0 22 chr4 44939417 44939601 -139349061 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 853 168 5 9 chr4 44939601 44939822 -139348840 + GA-rich Low_complexity Low_complexity 1 220 0 2223 115 41 0 chr4 44939836 44940175 -139348487 - L1PA13 LINE L1 -191 5972 5620 1248 125 0 0 chr4 44940175 44940358 -139348304 + L1PA13 LINE L1 5975 6158 -5 1364 197 36 11 chr4 44940370 44940649 -139348013 + AluJb SINE Alu 10 295 -17 600 170 23 23 chr4 44940660 44940831 -139347831 + GA-rich Low_complexity Low_complexity 2 172 0 2034 141 3 0 chr4 44941025 44941329 -139347333 + AluSx SINE Alu 1 305 -7 351 316 51 42 chr4 44941458 44941673 -139346989 - LTR16B LTR ERVL -247 217 1 977 255 14 39 chr4 44941867 44942149 -139346513 - MLT2C1 LTR ERVL -106 291 17 22 35 0 0 chr4 44942520 44942549 -139346113 + AT_rich Low_complexity Low_complexity 1 29 0 2054 118 0 10 chr4 44942570 44942866 -139345796 - AluSc SINE Alu -16 293 1 21 82 0 0 chr4 44942926 44942975 -139345687 + AT_rich Low_complexity Low_complexity 1 49 0 21 57 0 0 chr4 44943083 44943118 -139345544 + AT_rich Low_complexity Low_complexity 1 35 0 437 215 35 35 chr4 44943220 44943364 -139345298 + L1MEc LINE L1 1023 1166 -5230 2023 109 7 10 chr4 44943566 44943869 -139344793 + AluSx SINE Alu 1 302 -10 257 344 0 8 chr4 44943890 44944012 -139344650 + L1MEc LINE L1 1250 1370 -4845 45 45 0 0 chr4 44944015 44944081 -139344581 + AT_rich Low_complexity Low_complexity 1 66 0 1409 270 41 39 chr4 44944115 44944825 -139343837 + L1MEc LINE L1 1565 2275 -4121 726 261 29 10 chr4 44944827 44945034 -139343628 - MER58C DNA MER1_type -2 213 3 338 275 42 26 chr4 44945037 44945230 -139343432 + L1MEc LINE L1 3112 3307 -2908 21 0 0 0 chr4 44945328 44945349 -139343313 + AT_rich Low_complexity Low_complexity 1 21 0 1664 162 75 25 chr4 44945894 44946252 -139342410 + MLT1B LTR MaLR 15 390 0 270 291 128 18 chr4 44946318 44946545 -139342117 + L1M4 LINE L1 2112 2363 -3783 884 304 71 65 chr4 44946614 44947274 -139341388 - PABL_B LTR ERV1 0 667 4 282 302 117 6 chr4 44947521 44947700 -139340962 + HAL1 LINE L1 1704 1902 -605 225 189 0 57 chr4 44948192 44948245 -139340417 + HAL1 LINE L1 2259 2308 -199 637 176 24 0 chr4 44950024 44950149 -139338513 - L1MA9 LINE L1 -362 5950 5823 968 221 53 50 chr4 44950153 44950475 -139338187 + L1MA9 LINE L1 5952 6274 -38 2091 81 3 52 chr4 44950782 44951092 -139337570 + AluY SINE Alu 2 296 -15 4711 156 51 27 chr4 44951514 44952264 -139336398 + L1PB4 LINE L1 5026 5757 -399 327 85 0 0 chr4 44952264 44952311 -139336351 + (CA)n Simple_repeat Simple_repeat 2 48 0 279 0 0 0 chr4 44952310 44952341 -139336321 + (TA)n Simple_repeat Simple_repeat 1 31 0 * 4711 156 51 27 chr4 44952311 44952707 -139335955 + L1PB4 LINE L1 5757 6154 -2 192 219 0 0 chr4 44953000 44953041 -139335621 - L2 LINE L2 -5 3308 3268 21 71 0 0 chr4 44953760 44953802 -139334860 + AT_rich Low_complexity Low_complexity 1 42 0 247 316 26 26 chr4 44955026 44955102 -139333560 + MER91A DNA MER1_type 5 80 -116 425 71 0 0 chr4 45006508 45006564 -139282098 + AluSc SINE Alu 235 290 -19 2152 78 61 0 chr4 45006582 45006875 -139281787 - AluY SINE Alu 0 311 1 3664 82 0 11 chr4 45007543 45008068 -139280594 - L1PA3 LINE L1 -2 6153 5635 249 319 205 12 chr4 45008689 45008855 -139279807 - MIR SINE MIR -36 226 29 322 98 20 0 chr4 45009205 45009256 -139279406 - MER53 DNA DNA -137 52 1 619 187 6 84 chr4 45009438 45009604 -139279058 + MER39 LTR ERV1 1 153 -554 3367 193 20 17 chr4 45009766 45010527 -139278135 - L1MC2 LINE L1 -11 6333 5571 314 169 0 0 chr4 45010654 45010713 -139277949 + MLT1A1 LTR MaLR 10 68 -297 6173 81 11 11 chr4 45010901 45012207 -139276455 + SVA Other Other 1 1384 -2 263 352 52 34 chr4 45012289 45012606 -139276056 - L2 LINE L2 -412 2902 2583 805 204 74 17 chr4 45012718 45012894 -139275768 + MER97c DNA MER1_type? 24 209 -881 23 68 0 0 chr4 45013144 45013188 -139275474 + AT_rich Low_complexity Low_complexity 1 44 0 621 256 26 0 chr4 45013757 45013913 -139274749 + MLT1A1 LTR MaLR 204 363 -2 266 258 67 98 chr4 45013929 45014123 -139274539 + L2 LINE L2 3114 3301 -12 1876 136 21 7 chr4 45014123 45014410 -139274252 + AluSg SINE Alu 1 291 -19 1320 253 36 71 chr4 45014465 45014904 -139273758 - LTR40b LTR ERVL -36 426 3 1198 87 12 6 chr4 45016183 45016355 -139272307 + L1PB1 LINE L1 5978 6150 -1 897 165 6 0 chr4 45016664 45016822 -139271840 + L1PA16 LINE L1 5997 6155 -11 373 301 17 0 chr4 45017076 45017177 -139271485 + MIR SINE MIR 45 152 -62 505 302 94 42 chr4 45017241 45017453 -139271209 - MIR SINE MIR -25 237 15 8873 155 37 18 chr4 45017880 45018817 -139269845 + Tigger1 DNA MER2_type 8 925 -1493 1914 131 29 0 chr4 45018817 45019141 -139269521 - AluSx SINE Alu 0 332 1 8873 155 37 18 chr4 45019141 45019474 -139269188 + Tigger1 DNA MER2_type 925 1250 -1168 7893 107 1 0 chr4 45019474 45021415 -139267247 + L1PA7 LINE L1 4193 6143 -11 8873 155 37 18 chr4 45021415 45021734 -139266928 + Tigger1 DNA MER2_type 1250 1630 -788 26 50 0 0 chr4 45021734 45021774 -139266888 + AT_rich Low_complexity Low_complexity 1 40 0 326 71 0 0 chr4 45021787 45021829 -139266833 + Tigger1 DNA MER2_type 1615 1656 -762 1277 296 140 11 chr4 45021829 45022349 -139266313 + L2 LINE L2 2050 2636 -678 722 301 119 30 chr4 45022342 45022804 -139265858 - L2 LINE L2 -414 2900 2398 * 765 175 0 7 chr4 45022927 45023064 -139265598 + FLAM_C SINE Alu 1 136 -7 433 330 26 42 chr4 45023250 45023441 -139265221 - L3 LINE CR1 -85 1492 1305 302 302 38 9 chr4 45023507 45023613 -139265049 - MER117 DNA MER1_type -48 149 41 480 288 61 58 chr4 45023983 45024296 -139264366 + HAL1b LINE L1 432 745 -603 395 266 121 32 chr4 45024309 45024648 -139264014 + HAL1b LINE L1 860 1228 -120 29 78 0 0 chr4 45024775 45024839 -139263823 + AT_rich Low_complexity Low_complexity 1 64 0 306 281 73 0 chr4 45024855 45024937 -139263725 + MIR SINE MIR 126 213 -49 203 239 0 60 chr4 45024978 45025095 -139263567 + (TATAA)n Simple_repeat Simple_repeat 5 114 0 814 341 13 56 chr4 45025226 45025675 -139262987 + L1PA16 LINE L1 123 552 -6287 4533 254 11 4 chr4 45025685 45027086 -139261576 + L1PA16 LINE L1 2767 4178 -2671 * 5006 232 11 25 chr4 45027071 45028473 -139260189 + L1PA16 LINE L1 5486 6860 -9 23 0 0 0 chr4 45028910 45028933 -139259729 + AT_rich Low_complexity Low_complexity 1 23 0 1435 188 7 14 chr4 45030625 45030901 -139257761 + AluJo SINE Alu 37 310 -2 24 67 0 0 chr4 45031081 45031126 -139257536 + AT_rich Low_complexity Low_complexity 1 45 0 623 156 101 0 chr4 45031193 45031302 -139257360 - MSTD LTR MaLR -4 392 273 468 233 10 0 chr4 45031324 45031427 -139257235 - MSTD LTR MaLR -292 104 1 188 361 59 50 chr4 45033569 45033688 -139254974 + L2 LINE L2 3147 3266 -6 23 33 0 0 chr4 45034560 45034590 -139254072 + AT_rich Low_complexity Low_complexity 1 30 0 1241 102 6 0 chr4 45035028 45035195 -139253467 + AluSc SINE Alu 2 169 -140 34516 35 1 0 chr4 45035296 45040270 -139248392 + L1PA3 LINE L1 1175 6155 0 338 220 33 55 chr4 45041094 45041185 -139247477 + MIR SINE MIR 1 89 -173 3448 106 10 6 chr4 45041185 45041694 -139246968 + MER9 LTR ERVK 1 511 0 2699 176 103 48 chr4 45041815 45042485 -139246177 + MER39 LTR ERV1 1 707 0 22 0 0 0 chr4 45042762 45042784 -139245878 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 45043074 45043095 -139245567 + AT_rich Low_complexity Low_complexity 1 21 0 490 312 136 70 chr4 45044032 45044872 -139243790 + L2 LINE L2 1684 2578 -736 255 61 0 0 chr4 45044929 45044962 -139243700 + (TG)n Simple_repeat Simple_repeat 1 33 0 2346 145 51 13 chr4 45044962 45045410 -139243252 - L1MB1 LINE L1 -15 6153 5689 684 94 0 0 chr4 45045410 45045506 -139243156 + L1MB1 LINE L1 5588 5683 -651 182 364 6 49 chr4 45045506 45045668 -139242994 + L2 LINE L2 2618 2772 -542 319 188 21 62 chr4 45045732 45045828 -139242834 + MER53 DNA DNA 98 189 0 201 74 0 0 chr4 45045942 45045969 -139242693 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 588 295 106 11 chr4 45046068 45046387 -139242275 + MLT1J1 LTR MaLR 69 377 -73 34 0 0 0 chr4 45046863 45046897 -139241765 + AT_rich Low_complexity Low_complexity 1 34 0 834 292 24 0 chr4 45046923 45047132 -139241530 - MER58A DNA MER1_type 0 224 11 243 162 15 29 chr4 45047241 45047309 -139241353 + CT-rich Low_complexity Low_complexity 3 69 0 370 297 75 0 chr4 45047671 45047850 -139240812 - L1MC/D LINE L1 -741 5687 5494 639 284 81 36 chr4 45047864 45048086 -139240576 - MIR SINE MIR -14 248 17 244 257 67 77 chr4 45048217 45048517 -139240145 - L1MC/D LINE L1 -810 5405 5109 740 261 81 44 chr4 45048522 45049140 -139239522 - L1MC/D LINE L1 -1194 5021 4381 245 342 11 43 chr4 45049149 45049333 -139239329 - L1MC/D LINE L1 -2057 4158 3981 4712 99 18 16 chr4 45049361 45050069 -139238593 - L1PB1 LINE L1 -5 6146 5437 232 307 84 18 chr4 45050069 45050294 -139238368 - L1MC/D LINE L1 -2221 3994 3755 265 259 15 76 chr4 45050710 45050841 -139237821 - L1MC/D LINE L1 -2588 3627 3505 571 289 128 53 chr4 45050881 45051350 -139237312 + MLT1H LTR MaLR 3 549 0 240 154 19 19 chr4 45051350 45051402 -139237260 + MLT1H-int LTR MaLR 1 52 -1683 359 365 17 12 chr4 45051455 45051696 -139236966 + MLT1H-int LTR MaLR 303 544 -827 253 304 61 14 chr4 45052216 45052364 -139236298 - L1MC/D LINE L1 -6211 185 31 417 324 65 88 chr4 45052561 45052959 -139235703 - L1MEd LINE L1 -5664 455 67 532 301 51 42 chr4 45053168 45053399 -139235263 + L1ME3A LINE L1 4923 5151 -995 2292 104 55 0 chr4 45053399 45053744 -139234918 - THE1B LTR MaLR 0 364 1 532 301 51 42 chr4 45053744 45053984 -139234678 + L1ME3A LINE L1 5151 5398 -748 1347 206 180 13 chr4 45054037 45054425 -139234237 + MLT1D LTR MaLR 51 503 -2 611 243 174 18 chr4 45054454 45054730 -139233932 + L1ME3A LINE L1 5851 6169 -1 565 168 32 0 chr4 45055777 45055902 -139232760 + L1MB7 LINE L1 6056 6184 0 725 252 187 19 chr4 45056273 45056487 -139232175 + MIR SINE MIR 13 262 0 278 314 169 0 chr4 45056977 45057101 -139231561 - L3b LINE CR1 -43 1540 1396 1834 316 46 43 chr4 45057780 45058945 -139229717 - L2 LINE L2 -4 3309 2147 1977 139 27 0 chr4 45058951 45059288 -139229374 - L1MA9 LINE L1 -176 6136 5791 629 231 0 0 chr4 45059286 45059420 -139229242 + L1MA9 LINE L1 6157 6290 -22 * 945 254 73 50 chr4 45059433 45059776 -139228886 - L2 LINE L2 -1157 2157 1807 21 0 0 0 chr4 45060223 45060244 -139228418 + AT_rich Low_complexity Low_complexity 1 21 0 208 250 0 42 chr4 45061038 45061110 -139227552 + A-rich Low_complexity Low_complexity 3 71 0 450 351 42 5 chr4 45061475 45061666 -139226996 + MIR SINE MIR 63 260 -2 7908 64 0 11 chr4 45061951 45062991 -139225671 + L1P LINE L1 66 1094 -5052 191 307 20 69 chr4 45063695 45063796 -139224866 - L2 LINE L2 -201 3071 2976 793 279 102 44 chr4 45063921 45064392 -139224270 + MLT1H LTR MaLR 1 547 -2 1345 218 128 0 chr4 45064521 45064833 -139223829 - L1MDa LINE L1 -6179 361 10 344 354 84 14 chr4 45065674 45065889 -139222773 + LTR33A LTR ERVL 132 361 -162 272 291 35 12 chr4 45065959 45066045 -139222617 - MIR SINE MIR -167 95 8 357 155 119 12 chr4 45069161 45069245 -139219417 + MER5B DNA MER1_type 86 178 0 512 224 145 0 chr4 45069257 45069409 -139219253 - MER5B DNA MER1_type -4 174 1 662 192 0 0 chr4 45069615 45069745 -139218917 + L1ME1 LINE L1 6025 6154 -12 360 0 0 0 chr4 45069811 45069851 -139218811 + (TCTA)n Simple_repeat Simple_repeat 2 41 0 273 328 101 8 chr4 45070099 45070218 -139218444 + LTR33 LTR ERVL 28 157 -364 205 250 0 0 chr4 45070301 45070341 -139218321 + polypyrimidine Low_complexity Low_complexity 6 45 0 2326 121 28 25 chr4 45070385 45070748 -139217914 + THE1B LTR MaLR 1 364 0 520 274 54 32 chr4 45071002 45071188 -139217474 + MIR SINE MIR 32 221 -41 251 341 57 34 chr4 45071868 45071956 -139216706 - L2 LINE L2 -28 3244 3155 198 159 43 0 chr4 45072417 45072486 -139216176 + (TA)n Simple_repeat Simple_repeat 2 73 0 27 29 0 0 chr4 45072905 45072939 -139215723 + AT_rich Low_complexity Low_complexity 1 34 0 315 71 0 0 chr4 45073530 45073572 -139215090 + (CA)n Simple_repeat Simple_repeat 2 43 0 209 268 0 0 chr4 45074056 45074097 -139214565 + MIR SINE MIR 40 80 -182 296 0 0 102 chr4 45074098 45074147 -139214515 + (TCTCCC)n Simple_repeat Simple_repeat 3 46 0 9686 47 2 138 chr4 45074156 45075764 -139212898 + SVA Other Other 2 1393 0 425 274 155 18 chr4 45075765 45075933 -139212729 + MIR SINE MIR 72 262 0 259 287 32 83 chr4 45076034 45076191 -139212471 + MIR SINE MIR 58 206 -56 322 230 8 135 chr4 45076947 45077073 -139211589 - L2 LINE L2 -5 3267 3158 216 0 0 0 chr4 45077383 45077407 -139211255 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 215 79 26 0 chr4 45078824 45078862 -139209800 + (CA)n Simple_repeat Simple_repeat 1 39 0 3748 145 19 71 chr4 45078871 45079699 -139208963 + LTR1 LTR ERV1 1 785 0 183 80 0 0 chr4 45079880 45079905 -139208757 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 191 183 150 17 chr4 45080621 45080681 -139207981 + MIR SINE MIR 125 192 -70 348 127 0 0 chr4 45080911 45080966 -139207696 + (CA)n Simple_repeat Simple_repeat 2 56 0 186 267 13 53 chr4 45081376 45081451 -139207211 + MIR SINE MIR 110 181 -81 1274 223 134 43 chr4 45081476 45081939 -139206723 + MLT1D LTR MaLR 1 505 0 622 333 34 19 chr4 45082087 45082351 -139206311 - L3 LINE CR1 -90 1487 1220 244 253 25 38 chr4 45082380 45082459 -139206203 - L3 LINE CR1 -280 1297 1220 280 370 76 43 chr4 45082653 45083259 -139205403 + L2 LINE L2 2242 2867 -447 21 71 0 0 chr4 45083804 45083846 -139204816 + AT_rich Low_complexity Low_complexity 1 42 0 4441 78 20 23 chr4 45083960 45085094 -139203568 + MER11A LTR ERVK 1 1266 0 369 0 0 0 chr4 45085428 45085469 -139203193 + (CA)n Simple_repeat Simple_repeat 2 42 0 3210 98 16 11 chr4 45085595 45086046 -139202616 + MLT2A2 LTR ERVL 1 453 0 537 329 107 0 chr4 45086139 45086355 -139202307 - MIR SINE MIR -1 261 23 183 42 0 0 chr4 45086721 45086745 -139201917 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1459 89 0 98 chr4 45087410 45087634 -139201028 - AluSx SINE Alu -105 207 6 22 35 0 0 chr4 45087649 45087678 -139200984 + AT_rich Low_complexity Low_complexity 1 29 0 1888 185 107 36 chr4 45088468 45088917 -139199745 + MER45B DNA AcHobo 310 790 -250 838 317 17 35 chr4 45088926 45089330 -139199332 + L1M4 LINE L1 1 397 -6452 14234 225 16 22 chr4 45089946 45095388 -139193274 + L1PA16 LINE L1 2231 7604 0 912 191 23 70 chr4 45095395 45095652 -139193010 + MER45B DNA AcHobo 785 1029 -11 377 282 63 91 chr4 45095674 45095806 -139192856 + L1M4 LINE L1 3628 3762 -3086 1805 139 44 17 chr4 45095806 45096100 -139192562 + AluSq SINE Alu 1 302 -11 377 282 63 91 chr4 45096100 45096329 -139192333 + L1M4 LINE L1 3762 3979 -2869 336 269 97 22 chr4 45096369 45096503 -139192159 + L1M4 LINE L1 4041 4184 -2664 2099 172 68 32 chr4 45096843 45097286 -139191376 + LTR2B LTR ERV1 32 490 0 24 56 0 42 chr4 45097357 45097428 -139191234 + AT_rich Low_complexity Low_complexity 1 68 0 347 328 95 15 chr4 45097598 45097860 -139190802 + L1M4 LINE L1 5172 5454 -1394 293 324 20 0 chr4 45097947 45098095 -139190567 + L1M4 LINE L1 5582 5732 -1116 33 0 0 0 chr4 45098668 45098701 -139189961 + AT_rich Low_complexity Low_complexity 1 33 0 224 338 68 47 chr4 45098744 45098892 -139189770 + MIR3 SINE MIR 41 191 -17 308 318 88 35 chr4 45099299 45099469 -139189193 + MIR SINE MIR 11 189 -73 396 325 11 0 chr4 45099640 45099770 -139188892 + MIR SINE MIR 38 171 -37 194 213 43 0 chr4 45099774 45099821 -139188841 + L2 LINE L2 3264 3312 -1 211 258 269 47 chr4 45099866 45100122 -139188540 + L2 LINE L2 3001 3313 0 401 97 14 0 chr4 45102075 45102147 -139186515 + (CA)n Simple_repeat Simple_repeat 2 74 0 210 71 0 0 chr4 45102149 45102177 -139186485 + (ATTG)n Simple_repeat Simple_repeat 3 30 0 192 361 0 0 chr4 45102212 45102273 -139186389 - MIR SINE MIR -7 255 195 25 65 0 0 chr4 45103697 45103743 -139184919 + AT_rich Low_complexity Low_complexity 1 46 0 661 292 58 12 chr4 45104033 45104276 -139184386 - L1ME3A LINE L1 -287 5883 5630 26 74 0 0 chr4 45104448 45104502 -139184160 + AT_rich Low_complexity Low_complexity 1 54 0 1758 205 99 14 chr4 45104579 45104961 -139183701 + L1MD2 LINE L1 5910 6331 -28 1109 251 17 0 chr4 45104961 45105196 -139183466 + MER8 DNA MER2_type 1 239 0 1758 205 99 14 chr4 45105196 45105228 -139183434 + L1MD2 LINE L1 6331 6359 0 409 280 5 20 chr4 45105229 45105429 -139183233 - L1M4 LINE L1 -3816 2330 2134 2117 78 7 3 chr4 45105508 45105821 -139182841 - AluY SINE Alu 0 314 1 26 0 0 0 chr4 45105839 45105865 -139182797 + AT_rich Low_complexity Low_complexity 1 26 0 250 293 0 49 chr4 45105970 45106052 -139182610 - MIR SINE MIR -115 93 16 1014 231 127 62 chr4 45106356 45106901 -139181761 + MER34C LTR ERV1 6 585 0 3760 148 18 65 chr4 45107165 45107890 -139180772 + LTR8 LTR ERV1 1 691 0 21 0 0 0 chr4 45107954 45107975 -139180687 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr4 45108581 45108610 -139180052 + AT_rich Low_complexity Low_complexity 1 29 0 1791 194 16 80 chr4 45110054 45110503 -139178159 + MLT2B3 LTR ERVL 1 420 -134 1640 223 41 37 chr4 45111147 45111609 -139177053 + MLT1C LTR MaLR 1 464 -3 22 0 0 0 chr4 45112712 45112734 -139175928 + AT_rich Low_complexity Low_complexity 1 22 0 676 182 72 33 chr4 45112974 45113155 -139175507 + LTR41 LTR ERVL 1 188 -585 318 50 0 0 chr4 45113194 45113234 -139175428 + (TG)n Simple_repeat Simple_repeat 2 41 0 1987 164 42 41 chr4 45113261 45113811 -139174851 - MLT2A2 LTR ERVL 0 554 1 196 311 234 12 chr4 45113823 45113990 -139174672 - L2 LINE L2 -102 3211 3008 1264 295 63 37 chr4 45113992 45114592 -139174070 - MLT2F LTR ERVL -10 653 38 377 325 176 65 chr4 45114642 45115246 -139173416 - L2 LINE L2 -339 2975 2305 862 215 57 0 chr4 45115665 45115842 -139172820 + MER58A DNA MER1_type 37 223 -1 863 258 96 75 chr4 45116509 45116893 -139171769 - MLT1J1 LTR MaLR 0 446 55 709 190 56 7 chr4 45117224 45117366 -139171296 + MER58A DNA MER1_type 37 185 -39 6646 74 3 3 chr4 45117560 45117679 -139170983 - L1PA8 LINE L1 -7 6165 6047 2411 61 0 26 chr4 45117679 45117991 -139170671 - AluY SINE Alu -7 304 1 6646 74 3 3 chr4 45117991 45119299 -139169363 - L1PA8 LINE L1 -124 6048 4760 841 298 178 35 chr4 45119589 45119976 -139168686 + L2 LINE L2 2438 2768 -545 2103 152 35 3 chr4 45119976 45120352 -139168310 - MLT1B LTR MaLR -2 388 1 841 298 178 35 chr4 45120352 45120719 -139167943 + L2 LINE L2 2768 3309 -4 474 326 29 6 chr4 45120843 45121018 -139167644 + MIR SINE MIR 39 217 -45 1403 240 101 36 chr4 45121030 45121564 -139167098 + MER50 LTR ERV1 10 578 -156 468 179 75 9 chr4 45121575 45121681 -139166981 + L1M4c LINE L1 830 942 -5442 1571 48 35 35 chr4 45121691 45121920 -139166742 - L1PA7 LINE L1 0 6154 5926 1098 79 0 0 chr4 45121920 45122060 -139166602 + MER50 LTR ERV1 593 732 -2 240 184 0 0 chr4 45123646 45123695 -139164967 + CT-rich Low_complexity Low_complexity 2 50 0 192 324 0 98 chr4 45123870 45123972 -139164690 - MER5A DNA MER1_type -3 186 95 32 26 0 0 chr4 45124660 45124699 -139163963 + AT_rich Low_complexity Low_complexity 1 39 0 337 274 34 96 chr4 45124699 45124907 -139163755 + HAL1 LINE L1 2309 2503 -4 21 71 0 0 chr4 45124927 45124969 -139163693 + AT_rich Low_complexity Low_complexity 1 42 0 339 307 52 39 chr4 45125785 45125938 -139162724 + MIR SINE MIR 75 229 -33 * 557 207 20 53 chr4 45125890 45126040 -139162622 - MIR SINE MIR 0 262 118 185 418 13 0 chr4 45126043 45126122 -139162540 - L2 LINE L2 -57 3215 3136 279 264 141 0 chr4 45126553 45126674 -139161988 - L2 LINE L2 -5 3308 3171 273 57 0 0 chr4 45126959 45126994 -139161668 + (ATG)n Simple_repeat Simple_repeat 2 36 0 231 348 0 59 chr4 45127073 45127195 -139161467 - MIR SINE MIR -40 168 53 289 264 0 0 chr4 45127238 45127325 -139161337 + (TA)n Simple_repeat Simple_repeat 1 87 0 459 0 0 0 chr4 45127389 45127440 -139161222 + (TA)n Simple_repeat Simple_repeat 1 51 0 243 61 0 0 chr4 45127442 45127475 -139161187 + (GA)n Simple_repeat Simple_repeat 2 34 0 2004 134 50 31 chr4 45127746 45128103 -139160559 + THE1B LTR MaLR 1 364 0 484 340 119 32 chr4 45129082 45129520 -139159142 + L2 LINE L2 2838 3313 0 23 33 0 0 chr4 45129924 45129954 -139158708 + AT_rich Low_complexity Low_complexity 1 30 0 784 267 69 4 chr4 45130299 45130531 -139158131 + MIR SINE MIR 16 262 0 270 316 88 35 chr4 45131153 45131324 -139157338 - L3 LINE CR1 -1114 463 284 591 185 0 25 chr4 45131499 45131644 -139157018 - FLAM_A SINE Alu 0 142 1 446 277 108 14 chr4 45132421 45132569 -139156093 - MIR SINE MIR -69 193 32 23 54 0 0 chr4 45132904 45132941 -139155721 + AT_rich Low_complexity Low_complexity 1 37 0 583 253 12 42 chr4 45133131 45133297 -139155365 - MIR SINE MIR -6 256 96 2315 68 0 0 chr4 45133303 45133625 -139155037 + AluY SINE Alu 1 311 0 1274 132 24 5 chr4 45133630 45133835 -139154827 + MSTA LTR MaLR 1 209 -219 2125 123 0 0 chr4 45134348 45134633 -139154029 + AluSg SINE Alu 1 285 -25 246 62 0 0 chr4 45134633 45134665 -139153997 + (TA)n Simple_repeat Simple_repeat 2 33 0 405 272 115 14 chr4 45134915 45135202 -139153460 + L1ME4a LINE L1 5793 6108 -13 809 233 172 14 chr4 45136403 45136840 -139151822 + L1ME3 LINE L1 2382 2887 -3259 1237 250 181 39 chr4 45136873 45137257 -139151405 + L1ME3 LINE L1 5284 5612 -550 2248 72 0 36 chr4 45137257 45137563 -139151099 - AluY SINE Alu -16 295 1 1237 250 181 39 chr4 45137563 45137943 -139150719 + L1ME3 LINE L1 5612 6150 -12 12927 149 52 11 chr4 45137981 45139044 -139149618 - Tigger1 DNA MER2_type 0 2418 1400 2153 99 17 3 chr4 45139044 45139346 -139149316 + AluY SINE Alu 1 306 -5 12927 149 52 11 chr4 45139346 45140605 -139148057 - Tigger1 DNA MER2_type -1018 1400 1 22 0 0 0 chr4 45140639 45140661 -139148001 + AT_rich Low_complexity Low_complexity 1 22 0 2197 116 0 0 chr4 45140809 45141111 -139147551 - AluSc SINE Alu -7 302 1 216 0 0 0 chr4 45141126 45141150 -139147512 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 1515 206 3 3 chr4 45141151 45141437 -139147225 - AluJo SINE Alu -24 288 3 16822 34 1 0 chr4 45141987 45144783 -139143879 - L1PA3 LINE L1 -2 6153 3357 1973 151 10 0 chr4 45144802 45145101 -139143561 + AluJo SINE Alu 1 302 -10 353 156 0 31 chr4 45146044 45146108 -139142554 + L1ME1 LINE L1 6033 6094 -72 584 223 0 23 chr4 45146110 45146240 -139142422 + FLAM_A SINE Alu 1 127 -6 24 32 0 0 chr4 45146517 45146548 -139142114 + AT_rich Low_complexity Low_complexity 1 31 0 293 314 129 36 chr4 45146632 45147474 -139141188 + L1M4 LINE L1 2255 3175 -2971 186 313 141 0 chr4 45147895 45147959 -139140703 + MER5A DNA MER1_type 9 81 -108 304 369 166 29 chr4 45148153 45148497 -139140165 + L3 LINE CR1 1111 1501 -76 1555 210 3 13 chr4 45150307 45150607 -139138055 - AluJb SINE Alu -15 297 1 235 328 0 0 chr4 45154706 45154770 -139133892 - L2 LINE L2 -6 3307 3244 243 326 160 28 chr4 45154847 45155080 -139133582 - L2 LINE L2 -237 3035 2778 286 292 45 88 chr4 45155131 45155439 -139133223 - L2 LINE L2 -785 2529 2235 430 263 59 28 chr4 45155644 45155883 -139132779 - L1MC4a LINE L1 -116 6005 5769 22 56 0 0 chr4 45155883 45155919 -139132743 + AT_rich Low_complexity Low_complexity 1 36 0 624 248 50 77 chr4 45156642 45156981 -139131681 - L1MEd LINE L1 -860 1630 1274 315 291 66 48 chr4 45157084 45157311 -139131351 - L1MEd LINE L1 -4973 1146 916 215 226 12 36 chr4 45157391 45157475 -139131187 + T-rich Low_complexity Low_complexity 2 83 0 1779 110 0 90 chr4 45157722 45158032 -139130630 + AluY SINE Alu 1 282 -29 25 0 0 0 chr4 45158046 45158071 -139130591 + AT_rich Low_complexity Low_complexity 1 25 0 243 88 0 0 chr4 45158724 45158758 -139129904 + (A)n Simple_repeat Simple_repeat 1 34 0 2196 138 48 3 chr4 45159240 45159611 -139129051 - MLT1B LTR MaLR 0 390 3 311 273 0 56 chr4 45161661 45161804 -139126858 + CT-rich Low_complexity Low_complexity 4 138 0 204 158 0 0 chr4 45162389 45162427 -139126235 + GA-rich Low_complexity Low_complexity 3 40 0 727 140 26 0 chr4 45163854 45163968 -139124694 + FLAM_C SINE Alu 1 117 -16 26 50 0 0 chr4 45164093 45164133 -139124529 + AT_rich Low_complexity Low_complexity 1 40 0 407 263 133 40 chr4 45166273 45166573 -139122089 + L1ME4a LINE L1 5629 5956 -165 243 0 0 0 chr4 45168679 45168706 -139119956 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 2077 142 39 25 chr4 45168779 45169138 -139119524 - THE1B LTR MaLR 0 364 1 317 294 94 84 chr4 45171696 45171982 -139116680 + L2 LINE L2 2573 2861 -453 2782 259 64 17 chr4 45174943 45175714 -139112948 + L1M4 LINE L1 51 857 -5685 * 3860 166 54 57 chr4 45175694 45176654 -139112008 + L1MB7 LINE L1 5219 6167 -17 200 243 0 27 chr4 45177282 45177356 -139111306 + (TTTA)n Simple_repeat Simple_repeat 1 72 0 992 243 84 36 chr4 45178802 45179589 -139109073 - L1MC5 LINE L1 -60 7901 7154 2448 136 5 14 chr4 45179785 45180227 -139108435 + SVA Other Other 1 438 -948 558 206 97 85 chr4 45180338 45180396 -139108266 + MER58B DNA MER1_type 175 231 -2189 2839 13 0 0 chr4 45180396 45180710 -139107952 - AluYb8 SINE Alu -4 314 1 558 206 97 85 chr4 45180710 45180793 -139107869 + MER58B DNA MER1_type 231 321 -2099 1059 79 0 0 chr4 45180793 45180932 -139107730 - MER85 DNA T2_type 0 139 1 558 206 97 85 chr4 45180932 45180954 -139107708 + MER58B DNA MER1_type 321 341 0 825 236 23 0 chr4 45181402 45181576 -139107086 - AluJo SINE Alu -8 304 127 241 342 145 49 chr4 45181636 45182725 -139105937 - L2 LINE L2 -1284 2030 837 2174 110 7 3 chr4 45183061 45183371 -139105291 + AluSx SINE Alu 1 311 -1 185 0 40 0 chr4 45184353 45184378 -139104284 + (TA)n Simple_repeat Simple_repeat 1 26 0 197 395 44 9 chr4 45184924 45185038 -139103624 - L2 LINE L2 -8 3264 3147 368 41 20 0 chr4 45186583 45186632 -139102030 + MADE1 DNA Mariner 7 56 -24 191 189 19 0 chr4 45187575 45187628 -139101034 + CT-rich Low_complexity Low_complexity 4 57 0 527 305 117 9 chr4 45188268 45188293 -139100369 + MIR SINE MIR 14 35 -227 2646 252 39 23 chr4 45188293 45189171 -139099491 + MER97a DNA MER1_type 2 893 -1 527 305 117 9 chr4 45189171 45189368 -139099294 + MIR SINE MIR 35 260 -2 243 0 0 0 chr4 45189767 45189794 -139098868 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 185 0 40 0 chr4 45189878 45189903 -139098759 + (TTAA)n Simple_repeat Simple_repeat 2 27 0 346 324 153 19 chr4 45189913 45190129 -139098533 - MIR SINE MIR -15 247 3 271 358 82 15 chr4 45191229 45191363 -139097299 + MIR SINE MIR 12 154 -108 893 235 132 58 chr4 45191386 45191916 -139096746 - MLT1E3 LTR MaLR -11 613 3 182 323 0 71 chr4 45191918 45192017 -139096645 + MIR SINE MIR 168 259 -3 297 300 67 47 chr4 45193300 45193450 -139095212 - MIR3 SINE MIR -3 205 53 182 301 146 0 chr4 45194282 45194385 -139094277 + L2 LINE L2 3196 3313 0 6025 151 19 6 chr4 45194529 45196259 -139092403 - L1MA4 LINE L1 0 6300 4548 2091 117 0 0 chr4 45196278 45196561 -139092101 + AluSq SINE Alu 1 283 -30 27 0 0 0 chr4 45196576 45196603 -139092059 + AT_rich Low_complexity Low_complexity 1 27 0 346 65 0 0 chr4 45196727 45196773 -139091889 + MADE1 DNA Mariner 35 80 0 1206 8 0 0 chr4 45196976 45197149 -139091513 + L1PA2 LINE L1 6009 6181 0 195 390 81 17 chr4 45197911 45198083 -139090579 + MIR SINE MIR 18 200 -62 701 311 61 40 chr4 45198243 45198539 -139090123 + MER115 DNA AcHobo 332 633 -60 1158 82 29 0 chr4 45198541 45198711 -139089951 + L1MA1 LINE L1 6127 6301 -1 24 53 0 0 chr4 45200671 45200709 -139087953 + AT_rich Low_complexity Low_complexity 1 38 0 410 277 32 45 chr4 45200761 45200916 -139087746 + MIR SINE MIR 48 200 -62 235 298 0 0 chr4 45200916 45200973 -139087689 - MIR SINE MIR -3 259 203 278 273 68 38 chr4 45201936 45202096 -139086566 + MIR3 SINE MIR 9 176 -64 21 36 0 0 chr4 45202899 45202927 -139085735 + AT_rich Low_complexity Low_complexity 1 28 0 284 304 165 25 chr4 45203687 45203845 -139084817 + MIR SINE MIR 66 245 -17 21 36 0 0 chr4 45204707 45204735 -139083927 + AT_rich Low_complexity Low_complexity 1 28 0 325 253 16 54 chr4 45204740 45204926 -139083736 + (TA)n Simple_repeat Simple_repeat 1 179 0 470 154 26 13 chr4 45205952 45206030 -139082632 - MER20 DNA MER1_type -138 81 3 294 357 70 0 chr4 45207249 45207378 -139081284 - L2 LINE L2 -6 3307 3170 28 29 0 0 chr4 45208364 45208399 -139080263 + AT_rich Low_complexity Low_complexity 1 35 0 503 106 11 11 chr4 45208446 45208540 -139080122 + L1PA15 LINE L1 6068 6161 -4 23 0 0 0 chr4 45208621 45208644 -139080018 + AT_rich Low_complexity Low_complexity 1 23 0 23 42 0 21 chr4 45208923 45208935 -139079727 + AT_rich Low_complexity Low_complexity 1 12 -35 2815 13 0 0 chr4 45208935 45209246 -139079416 + AluYa5 SINE Alu 1 311 0 23 42 0 21 chr4 45209246 45209281 -139079381 + AT_rich Low_complexity Low_complexity 12 47 0 189 0 0 0 chr4 45260306 45260327 -139028335 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3111 162 67 28 chr4 45260849 45261552 -139027110 + L1MB5 LINE L1 5423 6152 -22 434 306 28 46 chr4 45264688 45264904 -139023758 - MIR SINE MIR -50 212 1 1302 232 155 3 chr4 45265713 45266023 -139022639 + LTR18A LTR ERVL 1 357 0 7375 171 7 5 chr4 45266030 45267495 -139021167 + HERVL18 LTR ERVL 2 1538 -4509 1529 147 0 0 chr4 45267470 45267694 -139020968 + HERVL18 LTR ERVL 5685 5908 -139 * 1318 223 132 12 chr4 45267714 45268033 -139020629 + LTR18A LTR ERVL 1 357 0 249 298 210 0 chr4 45268036 45268160 -139020502 + MIR SINE MIR 5 154 -108 2527 216 40 60 chr4 45268240 45268906 -139019756 + MER82 DNA MER2_type 1 653 0 481 275 85 37 chr4 45268951 45269140 -139019522 + MIR SINE MIR 63 260 -2 1307 236 0 14 chr4 45269783 45270067 -139018595 - AluJo SINE Alu -30 282 3 27 0 0 0 chr4 45270264 45270291 -139018371 + AT_rich Low_complexity Low_complexity 1 27 0 2031 148 0 10 chr4 45271418 45271715 -139016947 + AluJb SINE Alu 1 294 -18 836 164 23 35 chr4 45272914 45273085 -139015577 + Tigger4(Zombi) DNA MER2_type 2563 2731 0 911 223 67 70 chr4 45273464 45273809 -139014853 + L1M4 LINE L1 10 353 -6189 1997 104 75 0 chr4 45273812 45274091 -139014571 + AluSx SINE Alu 5 304 -8 1425 185 73 7 chr4 45274233 45274519 -139014143 + AluSx SINE Alu 5 309 -3 183 80 0 0 chr4 45274528 45274553 -139014109 + (A)n Simple_repeat Simple_repeat 1 25 0 4547 227 54 40 chr4 45274553 45275268 -139013394 + L1M4 LINE L1 343 1046 -5600 1049 253 122 6 chr4 45275268 45275588 -139013074 + LTR18A LTR ERVL 1 357 0 4547 227 54 40 chr4 45275588 45275663 -139012999 + L1M4 LINE L1 1046 1118 -5528 3067 116 13 2 chr4 45275663 45276111 -139012551 - MLT2A2 LTR ERVL 0 453 1 4547 227 54 40 chr4 45276111 45276809 -139011853 + L1M4 LINE L1 1118 1877 -4769 39222 77 10 8 chr4 45276826 45282945 -139005717 - L1PA5 LINE L1 -8 6146 11 1836 239 61 52 chr4 45282954 45283736 -139004926 + L1M4 LINE L1 2041 2785 -3859 2187 93 13 17 chr4 45283736 45284038 -139004624 + AluY SINE Alu 1 301 -10 1836 239 61 52 chr4 45284038 45284465 -139004197 + L1M4 LINE L1 2785 3207 -3437 1410 173 188 10 chr4 45284527 45284754 -139003908 + L1MB7 LINE L1 5700 5885 -299 1944 150 10 0 chr4 45284754 45285048 -139003614 + AluSp SINE Alu 1 297 -16 1410 173 188 10 chr4 45285048 45285213 -139003449 + L1MB7 LINE L1 5885 6162 -22 180 0 0 0 chr4 45285676 45285696 -139002966 + (T)n Simple_repeat Simple_repeat 1 20 0 3763 0 0 0 chr4 45285711 45286129 -139002533 - L1HS LINE L1 0 6155 5738 757 225 51 8 chr4 45286384 45286620 -139002042 - L1MEc LINE L1 -5486 910 665 1244 305 85 13 chr4 45286666 45287194 -139001468 - L1MEc LINE L1 -5811 585 20 2690 26 3 0 chr4 45287724 45288033 -139000629 + AluY SINE Alu 1 310 -1 244 314 57 48 chr4 45288228 45288352 -139000310 + L2 LINE L2 3177 3301 -12 188 343 20 39 chr4 45288496 45288598 -139000064 + L2 LINE L2 3192 3291 -22 1326 302 63 73 chr4 45289263 45290204 -138998458 - L2 LINE L2 0 3313 2383 1088 267 233 10 chr4 45290723 45291196 -138997466 - MLT1G1 LTR MaLR 0 578 3 241 356 0 0 chr4 45291199 45291272 -138997390 + L2 LINE L2 3194 3266 -6 412 138 24 16 chr4 45291791 45291914 -138996748 + (TA)n Simple_repeat Simple_repeat 2 125 0 21 0 0 0 chr4 45292515 45292536 -138996126 + AT_rich Low_complexity Low_complexity 1 21 0 216 311 66 0 chr4 45292575 45292636 -138996026 + L2 LINE L2 3215 3279 -34 272 277 108 15 chr4 45293846 45293976 -138994686 + L2 LINE L2 2803 2944 -370 365 175 0 0 chr4 45294027 45294090 -138994572 + MLT2B3 LTR ERVL 3 65 -489 2285 205 19 40 chr4 45294190 45294632 -138994030 + MLT2B3 LTR ERVL 82 515 -39 216 111 0 0 chr4 45294632 45294668 -138993994 + (TCTA)n Simple_repeat Simple_repeat 2 37 0 2285 205 19 40 chr4 45294668 45294704 -138993958 + MLT2B3 LTR ERVL 515 550 -4 3208 128 49 6 chr4 45295569 45296099 -138992563 - MER41C LTR ERV1 -1 553 1 27 0 0 0 chr4 45297473 45297500 -138991162 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr4 45297984 45298008 -138990654 + AT_rich Low_complexity Low_complexity 1 24 0 2118 89 0 4 chr4 45298624 45299018 -138989644 - AluSg SINE Alu 0 393 1 253 298 111 6 chr4 45299200 45299371 -138989291 + MIR SINE MIR 48 236 -26 735 353 107 22 chr4 45299603 45299725 -138988937 - L2 LINE L2 -1381 1933 1823 2451 119 19 5 chr4 45299725 45300095 -138988567 - THE1C LTR MaLR 0 375 1 735 353 107 22 chr4 45300095 45300731 -138987931 - L2 LINE L2 -1491 1823 1111 180 188 62 21 chr4 45300949 45300997 -138987665 - MIR SINE MIR -113 149 100 231 285 104 35 chr4 45301433 45301577 -138987085 - MER102b DNA MER1_type -9 332 179 180 0 0 0 chr4 45301971 45301991 -138986671 + (A)n Simple_repeat Simple_repeat 1 20 0 1111 230 97 27 chr4 45303149 45303573 -138985089 + MLT1D LTR MaLR 1 467 0 1333 254 75 32 chr4 45303697 45304166 -138984496 - LTR16C LTR ERVL -2 489 1 266 191 0 0 chr4 45304321 45304368 -138984294 - L1M2 LINE L1 -635 7075 7029 * 293 163 0 0 chr4 45304359 45304408 -138984254 + L1 LINE L1 4752 4800 -1346 13988 190 26 19 chr4 45304413 45305165 -138983497 - L1M2 LINE L1 -684 7026 6280 631 191 64 0 chr4 45305165 45305275 -138983387 + FLAM_A SINE Alu 2 118 -15 13988 190 26 19 chr4 45305275 45308061 -138980601 - L1M2 LINE L1 -1430 6280 3463 293 115 0 19 chr4 45308530 45308582 -138980080 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 194 308 132 0 chr4 45308825 45308916 -138979746 + L2 LINE L2 3008 3110 -203 1009 244 47 6 chr4 45308971 45309431 -138979231 + MLT1F1 LTR MaLR 13 558 -9 546 235 118 0 chr4 45309488 45309624 -138979038 + MER3 DNA MER1_type 47 198 -11 422 208 20 101 chr4 45309652 45309801 -138978861 + L2 LINE L2 3164 3300 -13 1603 214 46 20 chr4 45309809 45310160 -138978502 - MLT1A2 LTR MaLR -11 363 4 3476 94 31 10 chr4 45310170 45310690 -138977972 - L1PA15 LINE L1 -8 6157 5627 354 296 10 10 chr4 45310693 45310791 -138977871 - L1M2 LINE L1 -5096 2400 2303 * 473 92 0 0 chr4 45310788 45310853 -138977809 - L1P4 LINE L1 -543 5622 5558 6447 141 53 25 chr4 45311064 45311984 -138976678 - Tigger3b DNA MER2_type -1797 1231 268 2436 161 101 19 chr4 45311984 45312500 -138976162 - LTR64 LTR ERVK 0 558 1 6447 141 53 25 chr4 45312500 45312760 -138975902 - Tigger3b DNA MER2_type -2760 268 17 207 0 0 0 chr4 45312858 45312881 -138975781 + (A)n Simple_repeat Simple_repeat 1 23 0 665 256 101 22 chr4 45313444 45313671 -138974991 - MIR SINE MIR -10 252 8 1301 223 32 7 chr4 45314110 45314420 -138974242 - MER82 DNA MER2_type -193 460 143 816 246 109 8 chr4 45314433 45314681 -138973981 + L1ME1 LINE L1 3589 3861 -2285 1523 265 116 41 chr4 45314690 45315122 -138973540 + MLT2F LTR ERVL 10 495 -168 1531 202 0 6 chr4 45315122 45315434 -138973228 - AluSg SINE Alu 0 310 1 1523 265 116 41 chr4 45315434 45315560 -138973102 + MLT2F LTR ERVL 495 610 -53 1274 271 48 56 chr4 45315801 45316108 -138972554 + MLT2F LTR ERVL 185 488 -175 2210 123 0 0 chr4 45316108 45316418 -138972244 - AluSg SINE Alu 0 310 1 1274 271 48 56 chr4 45316418 45316593 -138972069 + MLT2F LTR ERVL 488 663 0 3532 232 57 29 chr4 45316614 45317939 -138970723 + L1ME1 LINE L1 3873 5272 -874 282 120 40 0 chr4 45317941 45318016 -138970646 + (TA)n Simple_repeat Simple_repeat 2 79 0 2337 240 56 13 chr4 45318183 45318862 -138969800 + L1ME1 LINE L1 5454 6161 -5 275 346 39 0 chr4 45318900 45319004 -138969658 - MIR SINE MIR 0 262 155 668 133 9 18 chr4 45319014 45319127 -138969535 - AluSq SINE Alu -90 223 112 362 329 41 7 chr4 45319134 45319280 -138969382 - MIR SINE MIR -110 152 2 219 209 23 12 chr4 45320001 45320087 -138968575 + (TA)n Simple_repeat Simple_repeat 1 87 0 529 327 12 0 chr4 45320189 45320354 -138968308 + MIR SINE MIR 61 227 -35 21 36 0 0 chr4 45320838 45320866 -138967796 + AT_rich Low_complexity Low_complexity 1 28 0 376 273 39 19 chr4 45321136 45321293 -138967369 - MIR SINE MIR -67 141 30 1164 234 62 31 chr4 45321694 45322048 -138966614 - MLT1A1 LTR MaLR 0 365 1 451 257 176 0 chr4 45322048 45322196 -138966466 - MIR SINE MIR -25 237 64 261 0 0 0 chr4 45322469 45322498 -138966164 + (CA)n Simple_repeat Simple_repeat 2 30 0 899 272 32 24 chr4 45322852 45323098 -138965564 - MIR SINE MIR -2 260 13 925 228 47 24 chr4 45323606 45323861 -138964801 - MIR SINE MIR -1 261 1 348 247 47 0 chr4 45323912 45323997 -138964665 - L2 LINE L2 0 3272 3184 1026 239 95 88 chr4 45324284 45324781 -138963881 - LTR33 LTR ERVL -6 515 16 225 240 33 7 chr4 45326086 45326236 -138962426 + (TA)n Simple_repeat Simple_repeat 2 155 0 283 191 191 21 chr4 45326593 45326687 -138961975 - MIR SINE MIR -4 258 149 203 268 89 106 chr4 45326731 45326854 -138961808 + MIR SINE MIR 84 204 -58 465 19 0 0 chr4 45326873 45326927 -138961735 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 22 0 0 0 chr4 45327549 45327571 -138961091 + AT_rich Low_complexity Low_complexity 1 22 0 1239 202 46 83 chr4 45328063 45328159 -138960503 + MER58B DNA MER1_type 4 102 -2318 2110 119 6 16 chr4 45328159 45328470 -138960192 - AluSc SINE Alu -1 308 1 1239 202 46 83 chr4 45328470 45328724 -138959938 + MER58B DNA MER1_type 102 341 0 2451 54 0 0 chr4 45329097 45329392 -138959270 + AluY SINE Alu 1 295 -16 1505 195 82 39 chr4 45330803 45331167 -138957495 - MLT1B LTR MaLR 0 390 11 22 0 0 0 chr4 45331207 45331229 -138957433 + AT_rich Low_complexity Low_complexity 1 22 0 1948 187 14 17 chr4 45331424 45331782 -138956880 - MLT1A1 LTR MaLR 0 365 9 300 118 44 0 chr4 45331816 45331884 -138956778 + (TA)n Simple_repeat Simple_repeat 2 72 0 421 280 39 50 chr4 45332472 45332681 -138955981 - MIR SINE MIR -52 210 6 217 317 87 48 chr4 45333520 45333624 -138955038 - L2 LINE L2 -56 3216 3109 446 199 54 102 chr4 45333945 45334131 -138954531 + MIR SINE MIR 64 240 -22 21 36 0 0 chr4 45334140 45334168 -138954494 + AT_rich Low_complexity Low_complexity 1 28 0 258 310 16 62 chr4 45334245 45334374 -138954288 - L2 LINE L2 -1 3312 3190 1162 380 31 53 chr4 45334437 45334855 -138953807 + MLT2D LTR ERVL 1 409 -5 585 345 19 19 chr4 45335694 45335952 -138952710 - MIR SINE MIR -2 260 3 310 235 0 0 chr4 45336159 45336227 -138952435 + L1MC4 LINE L1 6636 6703 -1339 262 243 0 43 chr4 45336419 45336489 -138952173 - L2 LINE L2 -5 3267 3201 765 241 37 5 chr4 45338246 45338437 -138950225 + LTR33 LTR ERVL 21 217 -304 306 297 169 62 chr4 45338840 45339194 -138949468 - L2 LINE L2 -727 2587 2196 318 331 39 39 chr4 45339226 45339404 -138949258 - MER5A DNA MER1_type -5 184 7 2241 176 32 17 chr4 45339461 45339926 -138948736 + L1M3 LINE L1 5256 5727 -456 26 0 0 0 chr4 45339975 45340001 -138948661 + AT_rich Low_complexity Low_complexity 1 26 0 244 294 53 47 chr4 45340153 45340513 -138948149 + L1M4 LINE L1 2205 2566 -3580 1121 182 15 0 chr4 45340618 45340816 -138947846 - AluJb SINE Alu -20 292 92 27 49 0 0 chr4 45341004 45341045 -138947617 + AT_rich Low_complexity Low_complexity 1 41 0 363 324 148 55 chr4 45341448 45341814 -138946848 + L2 LINE L2 1473 1914 -1400 1457 162 4 4 chr4 45341814 45342073 -138946589 - L1MA4A LINE L1 -5 6298 6040 363 324 148 55 chr4 45342073 45342286 -138946376 + L2 LINE L2 1914 2106 -1208 22 35 0 0 chr4 45342509 45342538 -138946124 + AT_rich Low_complexity Low_complexity 1 29 0 8591 155 24 4 chr4 45343573 45345797 -138942865 + L1PA15 LINE L1 3718 5985 -178 1442 173 124 59 chr4 45345797 45345972 -138942690 + MSTA LTR MaLR 1 163 -265 4778 58 2 8 chr4 45345972 45346617 -138942045 + L1PA7 LINE L1 5535 6175 0 1442 173 124 59 chr4 45346617 45346828 -138941834 + MSTA LTR MaLR 163 413 -15 1021 143 10 25 chr4 45346829 45347025 -138941637 + L1PA15 LINE L1 5971 6163 -2 202 250 19 0 chr4 45347626 45347678 -138940984 + L2 LINE L2 2394 2446 -868 474 387 54 5 chr4 45348061 45348247 -138940415 + MER91A DNA MER1_type 2 196 0 252 306 120 35 chr4 45348470 45348845 -138939817 + MLT1L LTR MaLR 124 611 -3 446 306 77 33 chr4 45350018 45350355 -138938307 + L1M4 LINE L1 2683 3034 -3112 405 0 0 0 chr4 45350685 45350730 -138937932 + (TG)n Simple_repeat Simple_repeat 1 45 0 25 0 0 0 chr4 45350781 45350806 -138937856 + AT_rich Low_complexity Low_complexity 1 25 0 267 153 0 51 chr4 45350806 45350865 -138937797 - L1MA4 LINE L1 -14 6286 6231 5635 157 20 5 chr4 45350868 45352090 -138936572 - L1MA4 LINE L1 -36 6264 5027 22 0 0 0 chr4 45352399 45352421 -138936241 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr4 45353417 45353460 -138935202 + AT_rich Low_complexity Low_complexity 1 43 0 249 229 17 34 chr4 45353467 45353585 -138935077 + (TA)n Simple_repeat Simple_repeat 1 116 0 2503 47 0 0 chr4 45353779 45354078 -138934584 - AluY SINE Alu -12 299 1 383 293 134 66 chr4 45354251 45354369 -138934293 + MLT1G1 LTR MaLR 79 188 -407 552 286 91 63 chr4 45354369 45354894 -138933768 - MER34 LTR ERV1 -2 540 1 383 293 134 66 chr4 45354894 45355229 -138933433 + MLT1G1 LTR MaLR 188 563 -32 330 263 0 32 chr4 45355775 45355870 -138932792 - L2 LINE L2 0 3313 3222 2129 110 10 0 chr4 45356168 45356458 -138932204 - AluSg SINE Alu -14 296 4 21 0 0 0 chr4 45356911 45356932 -138931730 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr4 45357963 45357995 -138930667 + AT_rich Low_complexity Low_complexity 1 32 0 620 300 95 44 chr4 45360543 45360860 -138927802 - MLT1K LTR MaLR -18 570 238 270 303 33 33 chr4 45360916 45361038 -138927624 - L2 LINE L2 -1073 2241 2120 23 68 0 0 chr4 45361699 45361743 -138926919 + AT_rich Low_complexity Low_complexity 1 44 0 277 365 14 20 chr4 45362407 45362555 -138926107 + L1PB4 LINE L1 122 268 -5936 7402 255 42 45 chr4 45362829 45365237 -138923425 + L1PB4 LINE L1 395 2814 -3389 2188 84 3 42 chr4 45365237 45365545 -138923117 + AluSq SINE Alu 1 296 -17 7402 255 42 45 chr4 45365545 45367172 -138921490 + L1PB4 LINE L1 2814 4444 -1759 5037 148 20 10 chr4 45367172 45368429 -138920233 + L1PB4 LINE L1 4939 6211 -2 1635 204 23 0 chr4 45368887 45369191 -138919471 + AluJo SINE Alu 1 311 -1 191 222 120 83 chr4 45369226 45369334 -138919328 + MER5A DNA MER1_type 56 167 -22 * 321 289 0 31 chr4 45369269 45369366 -138919296 - MER5A DNA MER1_type -94 95 2 589 310 75 19 chr4 45369982 45370250 -138918412 - L2 LINE L2 -1 3312 3030 263 266 238 7 chr4 45370334 45370477 -138918185 - MLT1L LTR MaLR -122 493 318 2047 128 0 3 chr4 45371811 45372100 -138916562 + AluSx SINE Alu 1 288 -24 32 0 0 0 chr4 45372268 45372300 -138916362 + AT_rich Low_complexity Low_complexity 1 32 0 279 161 0 0 chr4 45372370 45372426 -138916236 + (TATATG)n Simple_repeat Simple_repeat 3 58 0 244 300 0 0 chr4 45372499 45372589 -138916073 - L1MC4 LINE L1 -1339 6703 6614 35508 80 10 3 chr4 45372641 45377451 -138911211 + L1PA5 LINE L1 11 4851 -1295 7196 56 2 1 chr4 45377551 45378532 -138910130 + L1PA5 LINE L1 5174 6154 0 224 219 0 0 chr4 45378719 45378760 -138909902 + (TATG)n Simple_repeat Simple_repeat 2 42 0 228 214 0 0 chr4 45378825 45378881 -138909781 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 756 262 172 25 chr4 45379815 45380258 -138908404 - L1MC4 LINE L1 0 8042 7535 12326 52 2 1 chr4 45381018 45383351 -138905311 - L1PA5 LINE L1 0 6154 3822 2292 46 0 0 chr4 45383351 45383636 -138905026 + L1P LINE L1 3504 3788 -2358 675 260 149 29 chr4 45383636 45383978 -138904684 - MLT1L LTR MaLR -115 500 118 1729 192 32 17 chr4 45383998 45384342 -138904320 - MLT1A1 LTR MaLR -16 349 1 2110 144 0 0 chr4 45384511 45384809 -138903853 - AluSx SINE Alu -14 298 1 494 254 21 42 chr4 45385138 45385280 -138903382 - MER63 DNA MER1_type -241 819 681 279 203 17 0 chr4 45385302 45385361 -138903301 + MER63 DNA MER1_type 2 687 -375 1757 202 32 3 chr4 45385381 45385728 -138902934 - MLT1A1 LTR MaLR -6 359 3 263 167 0 0 chr4 45385746 45385788 -138902874 - MER63 DNA MER1_type -887 43 2 294 291 94 8 chr4 45386369 45386496 -138902166 + L2 LINE L2 2872 3009 -263 1247 203 95 54 chr4 45386496 45386865 -138901797 - MLT1B LTR MaLR -6 384 1 341 351 45 57 chr4 45386877 45387142 -138901520 + L2 LINE L2 3036 3297 -16 209 274 16 0 chr4 45387230 45387292 -138901370 - MIR SINE MIR -29 233 171 313 283 190 5 chr4 45387359 45387543 -138901119 - L1ME LINE L1 -485 5636 5419 303 332 81 69 chr4 45388091 45388338 -138900324 + L2 LINE L2 3023 3272 0 372 42 0 0 chr4 45388419 45388467 -138900195 - MADE1 DNA Mariner 0 80 33 491 248 14 35 chr4 45388593 45388738 -138899924 - MER76 LTR ERV -153 535 394 2874 196 32 56 chr4 45388745 45389438 -138899224 + LTR8 LTR ERV1 16 691 0 697 234 71 53 chr4 45389480 45389762 -138898900 - MER76 LTR ERV -401 287 1 314 233 67 73 chr4 45390826 45390976 -138897686 + L1ME4a LINE L1 5955 6103 -18 260 357 90 62 chr4 45390979 45391402 -138897260 - L2 LINE L2 -2054 1260 826 456 312 50 15 chr4 45392331 45392530 -138896132 - MLT1H LTR MaLR -236 313 108 929 189 0 56 chr4 45392794 45392908 -138895754 + MLT1B LTR MaLR 1 120 -270 1983 141 7 3 chr4 45392908 45393207 -138895455 + AluSx SINE Alu 12 311 -1 929 189 0 56 chr4 45393207 45393423 -138895239 + MLT1B LTR MaLR 120 388 -2 268 286 0 11 chr4 45395400 45395491 -138893171 - LTR67 LTR ERVL -11 546 457 397 350 40 20 chr4 45396113 45396313 -138892349 - MIR SINE MIR -12 250 47 192 158 0 0 chr4 45396326 45396364 -138892298 + CT-rich Low_complexity Low_complexity 2 39 0 23 0 0 0 chr4 45396526 45396549 -138892113 + AT_rich Low_complexity Low_complexity 1 23 0 856 261 100 9 chr4 45397400 45397630 -138891032 + MIR SINE MIR 1 251 -11 255 254 97 22 chr4 45397654 45397788 -138890874 - L1ME LINE L1 -263 5858 5715 420 300 36 16 chr4 45397800 45398047 -138890615 - L1ME LINE L1 -1487 4659 4408 2412 76 0 3 chr4 45398307 45398610 -138890052 + AluY SINE Alu 1 302 -9 1323 167 0 4 chr4 45398731 45398964 -138889698 + AluY SINE Alu 80 311 0 522 334 163 24 chr4 45399428 45399802 -138888860 - L2 LINE L2 -84 3229 2804 605 232 172 0 chr4 45399824 45399975 -138888687 - MER5A DNA MER1_type -6 183 7 1938 303 213 22 chr4 45399995 45401597 -138887065 - L2 LINE L2 -528 2786 879 2394 76 7 0 chr4 45403707 45404010 -138884652 - AluSp SINE Alu -8 305 1 818 310 39 0 chr4 45404833 45405065 -138883597 - MIR SINE MIR -5 257 17 23 33 0 0 chr4 45405472 45405502 -138883160 + AT_rich Low_complexity Low_complexity 1 30 0 2264 91 0 22 chr4 45406410 45406728 -138881934 - AluY SINE Alu 0 311 1 206 416 74 0 chr4 45407358 45407507 -138881155 - MIR3 SINE MIR -17 191 32 1666 173 30 0 chr4 45409727 45410028 -138878634 - AluJo SINE Alu -2 310 1 343 362 116 9 chr4 45410741 45410965 -138877697 - MIR SINE MIR 0 262 15 32 0 0 0 chr4 45411561 45411593 -138877069 + AT_rich Low_complexity Low_complexity 1 32 0 1952 130 11 59 chr4 45412638 45412992 -138875670 + MER1B DNA MER1_type 1 337 0 376 235 83 136 chr4 45413777 45414011 -138874651 + L1ME4a LINE L1 5615 5811 -310 1953 153 3 0 chr4 45414011 45414306 -138874356 + AluSx SINE Alu 1 296 -16 376 235 83 136 chr4 45414306 45414564 -138874098 + L1ME4a LINE L1 5811 6081 -40 269 316 34 26 chr4 45416113 45416230 -138872432 - MIR SINE MIR -89 173 56 4622 163 17 0 chr4 45416520 45417343 -138871319 - L1PB4 LINE L1 -3 6153 5317 2565 99 0 0 chr4 45417358 45417712 -138870950 - L1PB1 LINE L1 -1 6150 5797 1296 82 41 0 chr4 45417720 45417916 -138870746 + L1P5 LINE L1 5254 5457 -694 250 78 0 78 chr4 45417913 45417964 -138870698 - L1M LINE L1 -972 5331 5285 * 239 377 0 0 chr4 45418056 45418133 -138870529 - L1M2 LINE L1 -5933 916 840 1032 73 20 0 chr4 45418134 45418285 -138870377 + L1P5 LINE L1 5304 5457 -694 2351 53 6 35 chr4 45619381 45619699 -138668963 + AluY SINE Alu 1 309 -2 25 0 0 0 chr4 45619802 45619827 -138668835 + AT_rich Low_complexity Low_complexity 1 25 0 3875 161 25 3 chr4 45620758 45621464 -138667198 + MER50 LTR ERV1 1 722 -12 9017 204 47 17 chr4 45621464 45623248 -138665414 + MER50-int LTR ERV1 7 1843 -5362 * 10740 157 39 42 chr4 45623247 45626606 -138662056 + MER50-int LTR ERV1 2787 6200 -1005 2385 106 3 3 chr4 45626604 45626961 -138661701 + MER50-int LTR ERV1 6841 7197 -8 * 3289 136 62 67 chr4 45626961 45627668 -138660994 + MER50 LTR ERV1 1 704 -30 1450 202 82 58 chr4 45628946 45629397 -138659265 - MLT1C LTR MaLR 0 467 6 1583 172 13 55 chr4 45629851 45630159 -138658503 - AluJo SINE Alu -17 295 1 216 280 0 0 chr4 45630253 45630303 -138658359 + CT-rich Low_complexity Low_complexity 3 52 0 225 65 0 0 chr4 45630314 45630345 -138658317 + (CA)n Simple_repeat Simple_repeat 2 32 0 224 362 130 7 chr4 45630935 45631073 -138657589 + MIR SINE MIR 12 166 -96 684 84 0 37 chr4 45631121 45631251 -138657411 - AluSc SINE Alu 0 309 183 21 0 0 0 chr4 45631367 45631388 -138657274 + AT_rich Low_complexity Low_complexity 1 21 0 274 302 62 31 chr4 45632147 45632223 -138656439 - L2 LINE L2 -594 2720 2637 2605 207 18 4 chr4 45632223 45632736 -138655926 + MLT2B1 LTR ERVL 1 520 0 274 302 62 31 chr4 45632736 45632788 -138655874 - L2 LINE L2 -677 2637 2588 1890 240 15 43 chr4 45633408 45633942 -138654720 - LTR40a LTR ERVL 0 519 1 486 296 13 0 chr4 45634203 45634362 -138654300 - MLT1A1 LTR MaLR -2 363 203 568 244 17 39 chr4 45634420 45634600 -138654062 - MLT1A1 LTR MaLR -186 179 4 1126 237 4 4 chr4 45635219 45635472 -138653190 + AluJo SINE Alu 1 253 -59 3347 188 42 4 chr4 45635576 45636333 -138652329 - L1 LINE L1 -1899 4949 4164 1419 318 20 73 chr4 45636348 45637306 -138651356 - L1 LINE L1 -5933 916 10 2474 133 57 0 chr4 45638506 45638911 -138649751 + MSTA LTR MaLR 1 428 0 7712 174 53 11 chr4 45638913 45640197 -138648465 + MSTA-int LTR MaLR 3 1367 -284 1443 127 45 0 chr4 45640197 45640417 -138648245 + MER30 DNA MER1_type 1 230 0 7712 174 53 11 chr4 45640417 45640715 -138647947 + MSTA-int LTR MaLR 1367 1651 0 2118 165 57 2 chr4 45640716 45641121 -138647541 + MSTA LTR MaLR 2 428 0 326 255 33 39 chr4 45641833 45641986 -138646676 + L1ME4a LINE L1 5934 6085 -36 204 143 71 0 chr4 45642764 45642806 -138645856 + (CAGAGA)n Simple_repeat Simple_repeat 2 46 0 650 248 20 106 chr4 45644027 45644144 -138644518 + MIR SINE MIR 37 124 -138 1358 159 17 0 chr4 45644144 45644376 -138644286 - MER46A DNA MER2_type 0 236 1 650 248 20 106 chr4 45644376 45644504 -138644158 + MIR SINE MIR 124 261 -1 456 301 81 11 chr4 45644688 45644874 -138643788 - MIR SINE MIR -53 209 11 219 389 0 9 chr4 45645026 45645134 -138643528 + L2 LINE L2 3165 3271 -1 1339 177 4 31 chr4 45645451 45645705 -138642957 + AluSx SINE Alu 7 253 -59 230 93 47 0 chr4 45645884 45645927 -138642735 + AluSx SINE Alu 255 299 -1 255 170 0 0 chr4 45646442 45646489 -138642173 + (CA)n Simple_repeat Simple_repeat 1 47 0 456 270 196 0 chr4 45648728 45648891 -138639771 - MIR SINE MIR -36 226 32 346 334 183 22 chr4 45648941 45649404 -138639258 - L2 LINE L2 -172 3100 2549 458 314 244 22 chr4 45650353 45650811 -138637851 + L2 LINE L2 2049 2608 -706 254 342 92 8 chr4 45651256 45651376 -138637286 - MIR3 SINE MIR -74 134 5 238 284 12 12 chr4 45652274 45652355 -138636307 + MIR SINE MIR 96 176 -86 975 142 0 0 chr4 45653893 45654027 -138634635 + AluJo SINE Alu 1 134 -178 1541 184 29 56 chr4 45654042 45654417 -138634245 + MLT1A1 LTR MaLR 1 365 0 242 189 19 57 chr4 45654570 45654614 -138634048 + Charlie7 DNA MER1_type 41 85 -2527 1426 159 137 31 chr4 45654614 45654935 -138633727 - THE1A LTR MaLR 0 355 1 242 189 19 57 chr4 45654935 45654996 -138633666 + Charlie7 DNA MER1_type 85 142 -2470 264 320 44 19 chr4 45655557 45655763 -138632899 + L1MC/D LINE L1 5456 5666 -455 2483 66 0 3 chr4 45655788 45656092 -138632570 + AluY SINE Alu 1 303 -8 249 286 0 0 chr4 45656106 45656176 -138632486 + L1MC/D LINE L1 5737 5806 -2002 862 278 129 19 chr4 45656185 45656660 -138632002 + MLT1H1 LTR MaLR 7 595 0 2022 161 74 83 chr4 45658049 45658566 -138630096 - MER44D DNA MER2_type -1882 605 37 2348 168 26 5 chr4 45658566 45658989 -138629673 + MSTB1 LTR MaLR 1 432 0 2022 161 74 83 chr4 45658989 45659025 -138629637 - MER44D DNA MER2_type -2450 37 2 197 33 33 0 chr4 45659511 45659541 -138629121 + (TG)n Simple_repeat Simple_repeat 2 32 0 38821 72 3 2 chr4 45660619 45666279 -138622383 - L1P2 LINE L1 -488 5666 3 5484 126 27 4 chr4 45666616 45668330 -138620332 - L1PA10 LINE L1 -29 6139 4391 1681 214 51 65 chr4 45668730 45669055 -138619607 - MLT1D LTR MaLR 0 505 188 1650 117 0 0 chr4 45669055 45669278 -138619384 + AluSc SINE Alu 86 308 -1 1681 214 51 65 chr4 45669278 45669462 -138619200 - MLT1D LTR MaLR -317 188 3 244 266 0 25 chr4 45671229 45671308 -138617354 + L2 LINE L2 2399 2475 -839 598 208 15 15 chr4 45671325 45671455 -138617207 + MLT1H LTR MaLR 12 141 -408 41 0 0 0 chr4 45671455 45671496 -138617166 + AT_rich Low_complexity Low_complexity 1 41 0 3369 202 6 13 chr4 45671619 45672321 -138616341 - L1MB8 LINE L1 -1 6177 5481 25 51 0 0 chr4 45673019 45673058 -138615604 + AT_rich Low_complexity Low_complexity 1 39 0 417 255 78 116 chr4 45673580 45674039 -138614623 - MLT1J2 LTR MaLR -4 446 1 184 191 71 0 chr4 45674062 45674104 -138614558 - MIR SINE MIR -124 138 94 185 240 80 0 chr4 45674257 45674307 -138614355 + MIR SINE MIR 47 100 -162 206 326 206 16 chr4 45674326 45674510 -138614152 + MIR SINE MIR 44 262 0 260 306 139 0 chr4 45676851 45676995 -138611667 + MIR3 SINE MIR 42 205 -3 396 305 86 11 chr4 45677536 45677723 -138610939 + L1ME LINE L1 380 580 -5625 1258 267 69 81 chr4 45678036 45678570 -138610092 + L1ME LINE L1 782 1321 -5075 1354 191 24 60 chr4 45678570 45678868 -138609794 + AluJo SINE Alu 3 289 -23 1258 267 69 81 chr4 45678868 45679603 -138609059 + L1ME LINE L1 1321 2036 -4360 1964 218 89 103 chr4 45679808 45680243 -138608419 + L1MB4 LINE L1 2220 2660 -3486 258 111 0 0 chr4 45680243 45680279 -138608383 + U2 snRNA snRNA 1 36 -152 1964 218 89 103 chr4 45680279 45680963 -138607699 + L1MB4 LINE L1 2660 3360 -2786 328 308 8 0 chr4 45681090 45681210 -138607452 + L1MB4 LINE L1 4927 5047 -1099 1461 184 0 21 chr4 45681824 45682107 -138606555 + AluJo SINE Alu 35 311 -1 918 281 147 19 chr4 45682566 45683057 -138605605 - L2 LINE L2 -11 3302 2736 349 301 148 34 chr4 45683475 45683684 -138604978 + MIR SINE MIR 29 261 -1 2945 168 52 28 chr4 45684104 45684753 -138603909 + L1MB4 LINE L1 5515 6179 -1 519 312 58 31 chr4 45685495 45685643 -138603019 - L1ME4a LINE L1 -237 6382 6239 1958 148 27 51 chr4 45685643 45686016 -138602646 + THE1B LTR MaLR 1 364 0 519 312 58 31 chr4 45686016 45686385 -138602277 - L1ME4a LINE L1 -380 6239 5837 22 0 0 0 chr4 45686766 45686788 -138601874 + AT_rich Low_complexity Low_complexity 1 22 0 297 0 0 0 chr4 45687083 45687116 -138601546 + (TG)n Simple_repeat Simple_repeat 2 34 0 7111 121 14 6 chr4 45687303 45688816 -138599846 - L1MA1 LINE L1 -2 6300 4777 1682 183 23 9 chr4 45688862 45689212 -138599450 - L1MA4 LINE L1 -7 6293 5939 705 280 62 12 chr4 45689763 45690066 -138598596 - L1ME3 LINE L1 -6 6158 5840 2080 200 65 15 chr4 45690068 45690548 -138598114 + LTR22 LTR ERVK 1 504 -5 4229 122 42 21 chr4 45690564 45690886 -138597776 + HERVK22 LTR ERVK 3 317 -6520 1881 107 89 0 chr4 45690886 45691167 -138597495 - AluY SINE Alu -5 306 1 4229 122 42 21 chr4 45691167 45691515 -138597147 + HERVK22 LTR ERVK 317 687 -6150 257 146 36 18 chr4 45691597 45691652 -138597010 - L1ME3 LINE L1 -352 5814 5759 * 7155 243 71 25 chr4 45691636 45692444 -138596218 - L1M4 LINE L1 -1456 5188 4419 846 219 166 53 chr4 45692444 45692800 -138595862 - MSTD LTR MaLR 0 396 1 7155 243 71 25 chr4 45692800 45694115 -138594547 - L1M4 LINE L1 -2225 4419 2934 241 26 53 0 chr4 45694115 45694153 -138594509 + (TA)n Simple_repeat Simple_repeat 1 40 0 7155 243 71 25 chr4 45694153 45694961 -138593701 - L1M4 LINE L1 -3710 2934 2165 3299 217 130 86 chr4 45694962 45695430 -138593232 - L1M4 LINE L1 -4690 1956 1510 2157 145 50 38 chr4 45695430 45695621 -138593041 + MSTA LTR MaLR 3 190 -238 1872 145 0 18 chr4 45695621 45695944 -138592718 + AluSc SINE Alu 1 318 0 2157 145 50 38 chr4 45695944 45696172 -138592490 + MSTA LTR MaLR 190 428 0 8480 185 36 2 chr4 45696172 45697764 -138590898 + MSTA-int LTR MaLR 1 1647 -4 2447 118 62 5 chr4 45697774 45698179 -138590483 + MSTA LTR MaLR 1 428 0 3299 217 130 86 chr4 45698179 45699465 -138589197 - L1M4 LINE L1 -5144 1502 46 423 380 0 16 chr4 45699496 45699683 -138588979 + L2 LINE L2 2617 2800 -514 830 315 74 33 chr4 45700216 45700607 -138588055 + HERV16 LTR ERVL 2112 2518 -2478 * 2313 340 83 54 chr4 45700592 45702977 -138585685 + HERV16 LTR ERVL 2667 5134 -630 1555 185 36 36 chr4 45702977 45703340 -138585322 + MLT1A1 LTR MaLR 3 365 0 2313 340 83 54 chr4 45703340 45703539 -138585123 + HERV16 LTR ERVL 5134 5326 -438 556 333 62 29 chr4 45703659 45703935 -138584727 + LTR16A LTR ERVL 79 363 -87 37 76 0 0 chr4 45704904 45704983 -138583679 + AT_rich Low_complexity Low_complexity 1 79 0 33 90 0 0 chr4 45704995 45705084 -138583578 + AT_rich Low_complexity Low_complexity 1 89 0 340 254 55 114 chr4 45705088 45705308 -138583354 - L1ME3A LINE L1 -2 6168 5962 687 205 36 20 chr4 45705343 45705558 -138583104 - L1ME3A LINE L1 -220 5950 5760 900 245 0 60 chr4 45705564 45705878 -138582784 - L1MA4 LINE L1 -3 6297 6003 1190 247 104 7 chr4 45705884 45706653 -138582009 - L1ME3A LINE L1 -405 5757 4917 418 251 61 32 chr4 45706835 45707082 -138581580 - L1ME3A LINE L1 -1594 4552 4299 5144 106 14 39 chr4 45707108 45707923 -138580739 - L1PA11 LINE L1 -21 7591 6798 477 94 35 0 chr4 45707923 45708008 -138580654 + (TA)n Simple_repeat Simple_repeat 2 89 0 18870 196 75 21 chr4 45708008 45710075 -138578587 - L1PA11 LINE L1 -792 6792 4838 2171 106 0 3 chr4 45710075 45710368 -138578294 - AluY SINE Alu -19 292 1 18870 196 75 21 chr4 45710368 45713448 -138575214 - L1PA11 LINE L1 -2746 4838 576 1807 80 4 17 chr4 45713548 45713786 -138574876 - AluSp SINE Alu -69 244 10 466 321 74 14 chr4 45715494 45715709 -138572953 - MIR SINE MIR -6 256 29 23 0 0 0 chr4 45716560 45716583 -138572079 + AT_rich Low_complexity Low_complexity 1 23 0 349 293 213 5 chr4 45716959 45717147 -138571515 - MIR SINE MIR -28 234 8 273 350 20 20 chr4 45717526 45717626 -138571036 - MIR SINE MIR -93 115 16 22 0 0 0 chr4 45718622 45718644 -138570018 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 45719040 45719061 -138569601 + AT_rich Low_complexity Low_complexity 1 21 0 532 293 86 10 chr4 45719683 45719881 -138568781 - MIR SINE MIR -24 238 26 189 0 0 0 chr4 45719918 45719939 -138568723 + (CAAAG)n Simple_repeat Simple_repeat 2 22 0 208 310 92 23 chr4 45720821 45720908 -138567754 - MIR SINE MIR -59 203 111 25 65 0 0 chr4 45721140 45721186 -138567476 + AT_rich Low_complexity Low_complexity 1 46 0 1935 144 35 3 chr4 45722009 45722328 -138566334 - MER2 DNA MER2_type -16 329 1 423 246 153 0 chr4 45722335 45722453 -138566209 - MIR SINE MIR -74 188 53 670 274 30 4 chr4 45722496 45722726 -138565936 - HAL1b LINE L1 -264 1084 849 3089 160 54 42 chr4 45722762 45723189 -138565473 - L1MA4 LINE L1 0 6300 5730 3945 92 48 30 chr4 45723189 45723818 -138564844 - MER51C LTR ERV1 0 640 1 3089 160 54 42 chr4 45723818 45724034 -138564628 - L1MA4 LINE L1 -570 5730 5518 308 226 23 60 chr4 45724032 45724165 -138564497 - HAL1b LINE L1 -568 780 653 * 253 313 45 0 chr4 45724634 45724701 -138563961 - L2 LINE L2 -9 3263 3194 349 281 13 65 chr4 45724892 45725045 -138563617 + MER5A DNA MER1_type 40 184 -5 254 333 0 24 chr4 45725437 45725521 -138563141 - MIR3 SINE MIR -116 92 11 276 301 81 15 chr4 45726506 45726642 -138562020 - MER90 LTR ERV1 -69 545 401 788 213 25 35 chr4 45726825 45727022 -138561640 - LTR65 LTR ERV1 -273 396 202 759 160 0 0 chr4 45727088 45727213 -138561449 + FLAM_C SINE Alu 1 125 -18 6195 138 51 28 chr4 45727385 45727702 -138560960 + Tigger3b DNA MER2_type 1 309 -2719 2191 109 3 6 chr4 45727702 45728013 -138560649 - AluSg SINE Alu 0 310 1 6195 138 51 28 chr4 45728013 45728377 -138560285 + Tigger3b DNA MER2_type 309 663 -2365 2120 115 0 0 chr4 45728377 45728672 -138559990 - AluY SINE Alu -16 295 1 6195 138 51 28 chr4 45728672 45729193 -138559469 + Tigger3b DNA MER2_type 663 1231 0 1151 247 55 68 chr4 45729299 45729813 -138558849 - L1M4 LINE L1 -2196 3950 3444 3998 182 62 20 chr4 45729821 45730846 -138557816 - L1MB7 LINE L1 -16 6666 5599 773 136 88 0 chr4 45730863 45731010 -138557652 + MER5C DNA MER1_type 165 324 0 3662 236 63 119 chr4 45731205 45731940 -138556722 - L1MB7 LINE L1 -1072 5572 4797 4632 119 25 4 chr4 45731940 45732655 -138556007 + L1PA16 LINE L1 5427 6156 -10 3662 236 63 119 chr4 45732655 45732931 -138555731 - L1MB7 LINE L1 -1847 4797 4507 264 30 0 0 chr4 45732931 45732964 -138555698 + (TG)n Simple_repeat Simple_repeat 2 34 0 3662 236 63 119 chr4 45732964 45734068 -138554594 - L1MB7 LINE L1 -2137 4507 3575 2522 239 119 29 chr4 45734076 45734098 -138554564 - L1MB7 LINE L1 -5575 967 948 234 0 0 0 chr4 45734098 45734124 -138554538 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2522 239 119 29 chr4 45734124 45734271 -138554391 - L1MB7 LINE L1 -5594 948 816 276 30 0 0 chr4 45734271 45734304 -138554358 + (TG)n Simple_repeat Simple_repeat 2 34 0 2522 239 119 29 chr4 45734304 45734965 -138553697 - L1MB7 LINE L1 -5726 816 61 2944 259 21 38 chr4 45734973 45735921 -138552741 - L1MEc LINE L1 -5419 977 46 23 0 0 0 chr4 45737160 45737183 -138551479 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr4 45737465 45737495 -138551167 + AT_rich Low_complexity Low_complexity 1 30 0 289 352 22 0 chr4 45738186 45738277 -138550385 + L2 LINE L2 3199 3291 -22 373 339 210 10 chr4 45739107 45739621 -138549041 + L2 LINE L2 1884 2500 -814 411 299 67 41 chr4 45739738 45739932 -138548730 + MLT1L LTR MaLR 172 370 -245 2571 197 38 2 chr4 45739999 45740501 -138548161 + MLT2B1 LTR ERVL 1 520 0 402 347 39 53 chr4 45740593 45740930 -138547732 + L2 LINE L2 2516 2847 -467 198 219 31 62 chr4 45741238 45741302 -138547360 + L2 LINE L2 2916 2977 -336 894 287 31 46 chr4 45741511 45741835 -138546827 - LTR40a LTR ERVL -118 401 83 1831 292 138 10 chr4 45741886 45742637 -138546025 + L2 LINE L2 2202 3037 -276 272 235 12 59 chr4 45742663 45742748 -138545914 + L2 LINE L2 2288 2368 -946 233 298 0 0 chr4 45742748 45742805 -138545857 + L2 LINE L2 3257 3313 0 451 267 133 24 chr4 45742816 45742981 -138545681 + MIR SINE MIR 60 242 -20 33 43 0 0 chr4 45743056 45743103 -138545559 + AT_rich Low_complexity Low_complexity 1 47 0 1033 151 0 24 chr4 45743189 45743355 -138545307 + FRAM SINE Alu 1 161 -15 303 288 127 8 chr4 45743367 45743485 -138545177 - MIR SINE MIR -45 217 86 2741 62 3 0 chr4 45743511 45743864 -138544798 - L1PA5 LINE L1 0 6154 5801 330 279 0 0 chr4 45744210 45744278 -138544384 + L2 LINE L2 3205 3272 0 23 54 0 0 chr4 45744469 45744506 -138544156 + AT_rich Low_complexity Low_complexity 1 37 0 21 71 0 0 chr4 45744832 45744874 -138543788 + AT_rich Low_complexity Low_complexity 1 42 0 1548 257 67 60 chr4 45745155 45745706 -138542956 + MLT1E LTR MaLR 1 550 -40 324 344 16 0 chr4 45746137 45746262 -138542400 + MIR3 SINE MIR 53 179 -29 21 0 0 0 chr4 45746300 45746321 -138542341 + AT_rich Low_complexity Low_complexity 1 21 0 704 234 0 14 chr4 45747439 45747584 -138541078 - FRAM SINE Alu -30 146 4 22 35 0 0 chr4 45747716 45747745 -138540917 + AT_rich Low_complexity Low_complexity 1 29 0 715 284 57 18 chr4 45748859 45749088 -138539574 + MIR SINE MIR 14 251 -11 311 324 0 0 chr4 45749296 45749370 -138539292 + L2 LINE L2 3234 3307 -6 1974 147 22 46 chr4 45749386 45749754 -138538908 + THE1C LTR MaLR 17 375 0 434 269 19 50 chr4 45749806 45749966 -138538696 - MLT1G1 LTR MaLR 0 595 441 226 175 53 0 chr4 45749977 45750034 -138538628 - MLT1G1 LTR MaLR -202 328 269 2026 221 63 20 chr4 45750050 45750561 -138538101 + MLT1E2 LTR MaLR 94 626 0 1789 182 80 42 chr4 45750888 45751338 -138537324 + MLT1C LTR MaLR 1 467 0 2320 166 53 30 chr4 45751348 45751854 -138536808 + MLT1C-int LTR MaLR 14 531 -840 719 222 6 54 chr4 45751854 45752034 -138536628 + MLT2C2 LTR ERVL 231 349 -48 191 217 17 0 chr4 45752070 45752130 -138536532 + (TA)n Simple_repeat Simple_repeat 2 62 0 417 195 73 0 chr4 45752585 45752667 -138535995 + MER67B LTR ERV1 109 196 -465 340 203 259 25 chr4 45752662 45752898 -138535764 - MER113 DNA MER1_type? -159 362 72 * 350 242 53 0 chr4 45752910 45753005 -138535657 + MER67A LTR ERV1 1 100 -443 423 178 0 0 chr4 45753040 45753120 -138535542 + MER67A LTR ERV1 34 141 -402 238 314 204 0 chr4 45753123 45753260 -138535402 + L2 LINE L2 2452 2616 -698 2305 60 3 0 chr4 45753274 45753559 -138535103 - AluY SINE Alu -25 286 1 1986 168 39 21 chr4 45754174 45754555 -138534107 + MLT1B LTR MaLR 1 388 -2 528 332 59 21 chr4 45754828 45755066 -138533596 + MIR SINE MIR 13 259 -3 555 248 110 8 chr4 45755442 45755829 -138532833 - MER113 DNA MER1_type? -4 517 53 414 165 99 0 chr4 45755829 45755903 -138532759 + MER67A LTR ERV1 1 83 -460 1780 203 70 51 chr4 45755903 45756416 -138532246 + MER67A LTR ERV1 1 543 0 2204 95 0 0 chr4 45756588 45756884 -138531778 + AluSg SINE Alu 1 296 -14 182 352 112 0 chr4 45757439 45757635 -138531027 + MIR SINE MIR 29 246 -16 233 198 198 10 chr4 45758243 45758339 -138530323 + MIR SINE MIR 21 134 -128 226 294 44 0 chr4 45758365 45758433 -138530229 - MIR SINE MIR -35 227 157 199 240 80 13 chr4 45758465 45758540 -138530122 + MIR SINE MIR 67 146 -116 182 294 0 127 chr4 45759971 45760097 -138528565 - L2 LINE L2 -1605 1709 1600 277 331 105 24 chr4 45761192 45761316 -138527346 + L2 LINE L2 3134 3267 -5 23 54 0 0 chr4 45762127 45762164 -138526498 + AT_rich Low_complexity Low_complexity 1 37 0 321 303 31 55 chr4 45762770 45762977 -138525685 - MIR3 SINE MIR -56 206 3 290 364 165 0 chr4 45763651 45763969 -138524693 - L2 LINE L2 -301 2971 2585 390 362 105 20 chr4 45764205 45764502 -138524160 - L2 LINE L2 -2098 1216 875 995 171 62 24 chr4 45764502 45764712 -138523950 + MER20 DNA MER1_type 1 218 -1 390 362 105 20 chr4 45764712 45764815 -138523847 - L2 LINE L2 -2439 875 782 229 264 55 45 chr4 45764868 45764978 -138523684 - MIR SINE MIR -45 217 107 21 36 0 0 chr4 45765678 45765706 -138522956 + AT_rich Low_complexity Low_complexity 1 28 0 21 95 0 0 chr4 45765771 45765834 -138522828 + AT_rich Low_complexity Low_complexity 1 63 0 227 200 0 0 chr4 45766522 45766562 -138522100 - L2 LINE L2 -12 3301 3262 196 310 80 26 chr4 45766567 45766680 -138521982 + MIR3 SINE MIR 84 202 -6 21 0 0 0 chr4 45768787 45768808 -138519854 + AT_rich Low_complexity Low_complexity 1 21 0 205 195 0 0 chr4 45770308 45770349 -138518313 + (TA)n Simple_repeat Simple_repeat 1 41 0 28 29 0 0 chr4 45770350 45770385 -138518277 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr4 45771737 45771758 -138516904 + (TTG)n Simple_repeat Simple_repeat 1 21 0 207 351 15 84 chr4 45772712 45772843 -138515819 + L2 LINE L2 3150 3271 -1 518 187 0 11 chr4 45773166 45773257 -138515405 - MIR SINE MIR -18 244 155 183 42 0 0 chr4 45774130 45774154 -138514508 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2199 71 4 0 chr4 45774160 45774429 -138514233 - AluSc SINE Alu -35 274 5 242 248 116 16 chr4 45774452 45774573 -138514089 + L1ME LINE L1 5725 5857 -264 463 221 115 9 chr4 45775646 45775759 -138512903 + FLAM_A SINE Alu 1 125 -17 30 27 0 0 chr4 45776968 45777005 -138511657 + AT_rich Low_complexity Low_complexity 1 37 0 1849 149 7 3 chr4 45777198 45777486 -138511176 + AluSx SINE Alu 7 295 -17 744 248 98 14 chr4 45778152 45778366 -138510296 + MIR SINE MIR 14 245 -17 672 176 93 69 chr4 45778374 45778521 -138510141 + MER6B DNA MER2_type 1 156 -709 2033 97 49 3 chr4 45778521 45778809 -138509853 - AluSg SINE Alu -9 301 1 672 176 93 69 chr4 45778809 45778865 -138509797 + MER6B DNA MER2_type 156 209 -1 2719 124 115 51 chr4 45779479 45780043 -138508619 + MER4A LTR ERV1 1 600 0 22 0 0 0 chr4 45783973 45783995 -138504667 + AT_rich Low_complexity Low_complexity 1 22 0 600 294 39 35 chr4 45785027 45785258 -138503404 + MIR SINE MIR 2 233 -29 386 201 186 41 chr4 45785601 45785795 -138502867 + L1ME4a LINE L1 5712 5933 -188 322 210 0 0 chr4 45785807 45785869 -138502793 + MER113 DNA MER1_type? 1 62 -459 467 233 67 0 chr4 45785930 45786050 -138502612 - MER104 DNA Tc2 -3 177 50 472 276 177 0 chr4 45788167 45788348 -138500314 - MIR SINE MIR -38 224 12 236 175 0 0 chr4 45788800 45788840 -138499822 + MER5A DNA MER1_type 150 189 0 906 193 46 69 chr4 45789062 45789280 -138499382 + AluJb SINE Alu 81 293 -19 300 342 59 26 chr4 45790782 45790934 -138497728 - MIR3 SINE MIR -46 162 6 224 256 0 49 chr4 45790959 45791041 -138497621 + MIR3 SINE MIR 94 171 -37 641 236 65 41 chr4 45791055 45791111 -138497551 + MER112 DNA MER1_type 8 61 -199 210 71 0 0 chr4 45791111 45791139 -138497523 + (TA)n Simple_repeat Simple_repeat 1 28 0 641 236 65 41 chr4 45791139 45791328 -138497334 + MER112 DNA MER1_type 61 259 -1 22 0 0 0 chr4 45791830 45791852 -138496810 + AT_rich Low_complexity Low_complexity 1 22 0 194 359 13 26 chr4 45792149 45792227 -138496435 + L2 LINE L2 2977 3053 -219 492 251 89 94 chr4 45842240 45842475 -138446187 - MIR SINE MIR -27 235 2 1762 261 41 32 chr4 45842604 45843088 -138445574 - MLT1F LTR MaLR 0 542 51 1970 187 3 14 chr4 45843088 45843457 -138445205 - MLT1A1 LTR MaLR 0 365 1 1762 261 41 32 chr4 45843457 45843509 -138445153 - MLT1F LTR MaLR -491 51 1 6663 144 17 2 chr4 45843691 45845163 -138443499 + L1MA2 LINE L1 4807 6304 0 312 222 30 11 chr4 45845192 45845306 -138443356 + L1MC4 LINE L1 7880 8038 -1 26 0 0 0 chr4 45845473 45845499 -138443163 + AT_rich Low_complexity Low_complexity 1 26 0 272 93 0 19 chr4 45845499 45845553 -138443109 + (TTTTTA)n Simple_repeat Simple_repeat 3 55 0 1032 207 19 9 chr4 45845688 45845901 -138442761 + MER20 DNA MER1_type 1 215 -4 9039 182 38 33 chr4 45846062 45848071 -138440591 - L1 LINE L1 -1635 5930 3933 227 136 0 0 chr4 45848071 45848115 -138440547 + LTR66 LTR ERVL 395 438 -172 9039 182 38 33 chr4 45848115 45848684 -138439978 - L1 LINE L1 -3632 3933 3368 2523 47 0 0 chr4 45848684 45848983 -138439679 + AluY SINE Alu 1 299 -12 9039 182 38 33 chr4 45848983 45849504 -138439158 - L1 LINE L1 -4197 3368 2771 9883 209 27 59 chr4 45849605 45853428 -138435234 - L1PA16 LINE L1 -177 5989 2299 410 372 94 47 chr4 45854564 45854946 -138433716 - L2 LINE L2 -3 3269 2870 259 211 0 0 chr4 45856696 45856748 -138431914 - L2 LINE L2 -5 3308 3257 2372 24 48 10 chr4 45856767 45857061 -138431601 + AluY SINE Alu 1 305 -6 604 196 35 7 chr4 45857229 45857372 -138431290 - L1MA10 LINE L1 -8 6326 6180 744 281 71 10 chr4 45857414 45857778 -138430884 - L1ME1 LINE L1 -163 6070 5669 228 35 0 0 chr4 45857787 45857816 -138430846 + (TA)n Simple_repeat Simple_repeat 2 30 0 1142 227 32 41 chr4 45857828 45857869 -138430793 - L1ME1 LINE L1 -581 5650 5610 1651 139 73 21 chr4 45857869 45858157 -138430505 - AluSq SINE Alu -6 307 5 1142 227 32 41 chr4 45858157 45858701 -138429961 - L1ME1 LINE L1 -621 5610 5095 362 355 152 12 chr4 45859450 45859785 -138428877 + L2 LINE L2 2860 3241 -31 188 314 14 0 chr4 45859804 45859874 -138428788 + MIR SINE MIR 90 160 -102 381 251 34 17 chr4 45860166 45860369 -138428293 - HAL1b LINE L1 -119 2388 797 752 327 65 22 chr4 45861063 45861570 -138427092 - HAL1 LINE L1 -749 1758 1230 225 239 23 11 chr4 45861589 45861677 -138426985 + (TTTA)n Simple_repeat Simple_repeat 4 92 0 361 241 85 18 chr4 45864934 45865045 -138423617 - FLAM_A SINE Alu -28 105 2 2383 68 0 34 chr4 45866070 45866392 -138422270 + AluY SINE Alu 1 311 0 684 297 156 3 chr4 45867395 45867785 -138420877 + LTR16A LTR ERVL 1 450 0 895 210 118 32 chr4 45868320 45868648 -138420014 - MLT1A1 LTR MaLR 0 396 3 231 227 45 15 chr4 45869771 45869837 -138418825 - LTR33A LTR ERVL -8 515 448 1463 236 41 6 chr4 45870567 45871033 -138417629 - L1ME1 LINE L1 -1428 4787 4306 2751 255 58 50 chr4 45871044 45873432 -138415230 - L1ME1 LINE L1 -2005 4210 32 2284 90 0 3 chr4 45874552 45874863 -138413799 - AluY SINE Alu 0 311 2 3792 182 3 3 chr4 45874890 45875549 -138413113 + L1PA16 LINE L1 5484 6142 -24 295 321 150 35 chr4 45875942 45876309 -138412353 - LTR33 LTR ERVL -112 409 1 392 297 10 0 chr4 45876535 45876636 -138412026 + MER81 DNA DNA 12 113 -1 6337 179 7 13 chr4 45876858 45876991 -138411671 - L1 LINE L1 -873 5273 5141 2267 118 8 35 chr4 45876991 45877365 -138411297 + THE1B LTR MaLR 1 364 0 11279 104 1 0 chr4 45877365 45878943 -138409719 + THE1B-int LTR MaLR 1 1580 0 2418 109 5 35 chr4 45878943 45879318 -138409344 + THE1B LTR MaLR 1 364 0 6337 179 7 13 chr4 45879318 45880467 -138408195 - L1 LINE L1 -1002 5144 3997 1927 171 8 13 chr4 45880467 45880845 -138407817 + L1MA4 LINE L1 5921 6297 -3 317 311 89 0 chr4 45882134 45882269 -138406393 + L3 LINE CR1 1229 1375 -202 1741 71 0 0 chr4 45882442 45882652 -138406010 - AluY SINE Alu -14 297 88 340 235 15 0 chr4 45885040 45885108 -138403554 + MIR SINE MIR 7 75 -187 536 258 57 48 chr4 45885195 45885404 -138403258 + MIR SINE MIR 52 262 0 205 258 16 0 chr4 45885407 45885469 -138403193 + (TCTCTG)n Simple_repeat Simple_repeat 4 66 0 417 309 159 23 chr4 45885634 45885854 -138402808 - MIR SINE MIR -2 260 11 1256 78 0 0 chr4 45886657 45886823 -138401839 - AluY SINE Alu 0 311 146 199 254 45 15 chr4 45887457 45887524 -138401138 + MIR3 SINE MIR 125 193 -15 1123 171 47 33 chr4 45888586 45888797 -138399865 - MER20 DNA MER1_type 0 219 6 329 194 9 111 chr4 45889136 45889244 -138399418 - MLT1F-int LTR MaLR -1269 102 6 1426 260 79 37 chr4 45889253 45889707 -138398955 - MLT1F LTR MaLR -4 538 66 1636 133 60 38 chr4 45889809 45890124 -138398538 + THE1C LTR MaLR 54 375 0 1008 242 112 9 chr4 45890124 45890455 -138398207 - L1 LINE L1 -3139 3007 2643 356 260 133 54 chr4 45890853 45891222 -138397440 + L1ME4a LINE L1 5721 6118 -3 29 0 0 0 chr4 45891641 45891670 -138396992 + AT_rich Low_complexity Low_complexity 1 29 0 218 305 42 68 chr4 45891928 45892046 -138396616 - L2 LINE L2 -263 3050 2936 192 97 0 0 chr4 45893817 45893848 -138394814 + (TTTTTG)n Simple_repeat Simple_repeat 1 31 0 777 276 51 0 chr4 45895888 45896102 -138392560 + MIR SINE MIR 4 228 -34 2212 230 77 35 chr4 45896222 45896858 -138391804 + L1MD2 LINE L1 5696 6358 -1 205 186 51 0 chr4 45896953 45897012 -138391650 + A-rich Low_complexity Low_complexity 5 66 0 417 20 0 0 chr4 45897121 45897171 -138391491 + (TG)n Simple_repeat Simple_repeat 2 51 0 741 211 0 14 chr4 45898425 45898572 -138390090 + MLT2C1 LTR ERVL 251 395 -2 23 33 0 0 chr4 45900194 45900224 -138388438 + AT_rich Low_complexity Low_complexity 1 30 0 217 279 25 0 chr4 45900421 45900500 -138388162 + (TA)n Simple_repeat Simple_repeat 2 82 0 672 351 86 5 chr4 45902586 45903019 -138385643 - L1MC4a LINE L1 -1903 5905 5438 2625 104 3 26 chr4 45903987 45904371 -138384291 + THE1C LTR MaLR 1 375 0 536 294 118 25 chr4 45905266 45905776 -138382886 - L1ME4a LINE L1 -1 6120 5564 364 176 28 50 chr4 45905943 45906125 -138382537 + (TTATA)n Simple_repeat Simple_repeat 2 179 0 286 312 129 18 chr4 45906960 45907130 -138381532 + L2 LINE L2 2224 2412 -902 297 326 0 0 chr4 45909005 45909094 -138379568 - MIR SINE MIR -3 259 171 300 250 91 0 chr4 45909819 45909907 -138378755 - L2 LINE L2 -1 3271 3176 191 200 0 25 chr4 45910155 45910195 -138378467 - L2 LINE L2 -606 2708 2670 745 309 193 15 chr4 45910544 45911147 -138377515 - L2 LINE L2 0 3313 2593 755 332 84 22 chr4 45911307 45911662 -138377000 - L2 LINE L2 -2725 589 213 310 341 23 16 chr4 45911665 45911794 -138376868 + MER94 DNA DNA 5 134 0 491 309 13 0 chr4 45911797 45911949 -138376713 - L2 LINE L2 -3113 201 48 354 246 134 58 chr4 45911945 45912116 -138376546 - L2 LINE L2 -235 3037 2854 * 458 306 141 21 chr4 45915095 45915337 -138373325 + Charlie8 DNA MER1_type 1 271 -2146 28 0 0 0 chr4 45915553 45915581 -138373081 + AT_rich Low_complexity Low_complexity 1 28 0 210 250 39 0 chr4 45915616 45915668 -138372994 + GA-rich Low_complexity Low_complexity 2 55 0 307 286 149 83 chr4 45916112 45916448 -138372214 + L3 LINE CR1 337 694 -883 301 289 19 109 chr4 45916627 45916717 -138371945 + L3 LINE CR1 928 1000 -577 484 326 53 0 chr4 45916717 45916904 -138371758 + MER117 DNA MER1_type 1 197 0 301 289 19 109 chr4 45916904 45916969 -138371693 + L3 LINE CR1 1000 1069 -508 387 127 0 0 chr4 45917022 45917085 -138371577 - L1P5 LINE L1 -619 5537 5475 1589 127 0 0 chr4 45917434 45917687 -138370975 - L1MA2 LINE L1 0 6304 6052 1034 209 43 0 chr4 45917753 45917963 -138370699 + MER20 DNA MER1_type 1 219 0 195 241 35 35 chr4 45918088 45918146 -138370516 - L3 LINE CR1 -283 1294 1237 228 322 81 57 chr4 45918161 45918372 -138370290 + MIR SINE MIR 21 236 -26 556 250 67 17 chr4 45919392 45919600 -138369062 + MIR SINE MIR 12 235 -27 309 213 50 0 chr4 45921145 45921225 -138367437 - L1MCa LINE L1 -4362 2064 1981 314 200 14 14 chr4 45922046 45922116 -138366546 - MIR SINE MIR -21 241 172 216 0 0 0 chr4 45922128 45922152 -138366510 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1839 18 9 4 chr4 45922185 45922410 -138366252 - L1PA2 LINE L1 -2 6153 5928 1759 70 7 12 chr4 45922410 45922678 -138365984 + L1HS LINE L1 5744 5942 -213 319 226 0 0 chr4 45923201 45923263 -138365399 + MER116 DNA Mariner 18 79 -1 207 290 80 80 chr4 45923789 45923989 -138364673 - L2 LINE L2 -219 3053 2854 277 294 72 57 chr4 45925050 45925244 -138363418 - L2 LINE L2 -10 3303 3107 49 52 0 0 chr4 45926222 45926299 -138362363 + AT_rich Low_complexity Low_complexity 1 77 0 1873 223 49 25 chr4 45927091 45927580 -138361082 + MLT1D LTR MaLR 5 505 0 180 316 154 17 chr4 45927593 45927710 -138360952 - MIR SINE MIR -46 216 84 576 300 40 18 chr4 45928007 45928230 -138360432 - L2 LINE L2 0 3313 3086 359 285 34 106 chr4 45928382 45928589 -138360073 - L2 LINE L2 -225 3088 2897 22 35 0 0 chr4 45928616 45928645 -138360017 + AT_rich Low_complexity Low_complexity 1 29 0 1653 217 16 27 chr4 45928776 45929145 -138359517 - MLT1A1 LTR MaLR 0 365 1 1051 282 11 57 chr4 45929796 45930292 -138358370 - L1PA13 LINE L1 -4973 2601 2182 372 343 29 69 chr4 45930957 45931132 -138357530 - L1M2 LINE L1 -5902 947 780 1204 351 19 19 chr4 45931143 45931729 -138356933 - L1PA13 LINE L1 -6200 1374 789 260 161 36 0 chr4 45932328 45932384 -138356278 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 2014 153 100 8 chr4 45932411 45932802 -138355860 + MSTA LTR MaLR 1 427 -1 185 304 0 0 chr4 45934145 45934191 -138354471 + L2 LINE L2 2927 2972 -341 618 228 89 33 chr4 45934778 45934958 -138353704 - MIR SINE MIR -33 229 40 203 324 102 37 chr4 45934978 45935086 -138353576 + L2 LINE L2 3184 3298 -15 333 314 100 14 chr4 45935370 45935510 -138353152 + MIR3 SINE MIR 32 183 -25 277 136 23 0 chr4 45935574 45935618 -138353044 - L2 LINE L2 -2 3311 3267 41 72 0 0 chr4 45936413 45936496 -138352166 + AT_rich Low_complexity Low_complexity 1 83 0 556 270 27 7 chr4 45937184 45937332 -138351330 + MIR SINE MIR 1 151 -111 689 261 60 5 chr4 45937336 45937535 -138351127 - MIR SINE MIR -2 260 51 247 274 0 0 chr4 45939005 45939056 -138349606 + MIR SINE MIR 27 77 -185 1950 244 98 37 chr4 45939056 45939737 -138348925 - MER50 LTR ERV1 0 734 12 325 229 0 190 chr4 45939758 45939809 -138348853 + MIR SINE MIR 92 151 -111 883 83 0 0 chr4 45939809 45939929 -138348733 + L1MA2 LINE L1 6184 6303 -1 325 229 0 190 chr4 45939929 45940056 -138348606 + MIR SINE MIR 151 236 -26 43970 42 2 0 chr4 45940279 45946417 -138342245 + L1PA4 LINE L1 3 6152 -3 217 353 8 68 chr4 45946434 45946567 -138342095 - L2 LINE L2 -7 3306 3182 686 34 0 0 chr4 45946971 45947059 -138341603 - L1M1 LINE L1 -4839 2726 2639 682 207 215 21 chr4 45947119 45947356 -138341306 - L1MC4 LINE L1 -188 7854 7572 1144 212 69 101 chr4 45947366 45947743 -138340919 + MLT1B LTR MaLR 11 375 -15 246 111 0 0 chr4 45947762 45947798 -138340864 - L1MC4 LINE L1 -466 7576 7541 464 296 31 6 chr4 45947840 45948002 -138340660 - L2 LINE L2 -680 2634 2469 245 289 226 26 chr4 45948203 45948393 -138340269 - MARNA DNA Mariner -222 364 137 13624 134 38 38 chr4 45948916 45949970 -138338692 + Tigger1 DNA MER2_type 1 1054 -1364 801 85 93 16 chr4 45949970 45950099 -138338563 + MER85 DNA T2_type 1 139 0 13624 134 38 38 chr4 45950099 45951464 -138337198 + Tigger1 DNA MER2_type 1054 2418 0 306 291 48 10 chr4 45951473 45951576 -138337086 - L2 LINE L2 -42 3271 3165 27 62 0 0 chr4 45951581 45951629 -138337033 + AT_rich Low_complexity Low_complexity 1 48 0 23 33 0 0 chr4 45953257 45953287 -138335375 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr4 45953489 45953513 -138335149 + AT_rich Low_complexity Low_complexity 1 24 0 2084 119 0 3 chr4 45954667 45954960 -138333702 - AluSx SINE Alu -20 292 1 335 209 38 38 chr4 45955559 45955664 -138332998 + L1MA4 LINE L1 5981 6085 -215 761 296 111 33 chr4 45955845 45956243 -138332419 + MLT1J2 LTR MaLR 3 431 -19 16124 195 89 101 chr4 45958618 45959380 -138329282 - L1PA16 LINE L1 -9 6860 6091 2437 50 26 0 chr4 45959380 45959683 -138328979 - AluY SINE Alu 0 311 1 16124 195 89 101 chr4 45959683 45960980 -138327682 - L1PA16 LINE L1 -778 6091 4780 2444 153 98 14 chr4 45960980 45961419 -138327243 + MER61D LTR ERV1 26 501 0 16124 195 89 101 chr4 45961419 45965850 -138322812 - L1PA16 LINE L1 -2089 4780 5 355 222 19 49 chr4 45966140 45966302 -138322360 - MER113 DNA MER1_type? -282 239 83 553 220 160 64 chr4 45966585 45966898 -138321764 - MER52A LTR ERV1 -2 1230 292 315 98 0 0 chr4 45966982 45967023 -138321639 - LTR3b LTR ERVK 0 500 460 3408 121 16 2 chr4 45967024 45967513 -138321149 - LTR3b LTR ERVK -4 496 1 243 88 0 0 chr4 45968566 45968600 -138320062 + (CA)n Simple_repeat Simple_repeat 1 34 0 482 279 75 12 chr4 45969854 45970015 -138318647 - MIR SINE MIR -2 260 90 1580 180 24 14 chr4 45970423 45970717 -138317945 - AluJo SINE Alu -15 297 1 206 265 44 29 chr4 45971874 45971942 -138316720 - L2 LINE L2 -1 3271 3203 21 0 0 0 chr4 45972210 45972231 -138316431 + AT_rich Low_complexity Low_complexity 1 21 0 378 93 0 0 chr4 45972294 45972348 -138316314 - MLT2B1 LTR ERVL 0 520 467 230 120 120 0 chr4 45972385 45972435 -138316227 - MLT2B1 LTR ERVL -45 475 420 367 127 42 0 chr4 45972449 45972567 -138316095 + (TA)n Simple_repeat Simple_repeat 1 123 0 231 88 0 0 chr4 45972567 45972601 -138316061 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2555 179 25 5 chr4 45972605 45973052 -138315610 - MLT2B1 LTR ERVL -64 456 1 228 35 0 0 chr4 45973508 45973537 -138315125 + (TG)n Simple_repeat Simple_repeat 1 29 0 456 270 49 54 chr4 45973586 45973790 -138314872 - MLT1K LTR MaLR -1 587 385 854 248 87 6 chr4 45974677 45975000 -138313662 - L1MC4 LINE L1 -160 7882 7534 227 204 136 19 chr4 45975024 45975127 -138313535 - L1MC4a LINE L1 -558 7250 7136 2912 61 70 70 chr4 45975917 45976317 -138312345 + MLT2A1 LTR ERVL 1 403 -41 387 0 0 0 chr4 45976317 45976360 -138312302 + (CA)n Simple_repeat Simple_repeat 2 44 0 2912 61 70 70 chr4 45976360 45976403 -138312259 + MLT2A1 LTR ERVL 402 444 0 237 305 152 0 chr4 45977065 45977170 -138311492 + L2 LINE L2 3177 3297 -16 10030 23 0 0 chr4 45977320 45978494 -138310168 - L1PA2 LINE L1 -1260 4886 3713 7874 14 0 0 chr4 45978494 45979779 -138308883 + L1PA2 LINE L1 4871 6155 0 387 258 61 30 chr4 45981139 45981271 -138307391 - MER20 DNA MER1_type -23 196 61 2159 138 119 13 chr4 46081913 46082298 -138206364 + MSTA LTR MaLR 3 428 0 8249 161 19 34 chr4 46082300 46083901 -138204761 + MSTA-int LTR MaLR 3 1580 0 1880 157 121 21 chr4 46083901 46084290 -138204372 + MSTA LTR MaLR 1 428 0 3132 191 90 104 chr4 46084782 46085383 -138203279 - L1MC3 LINE L1 -1 7784 7125 249 282 0 13 chr4 46085383 46085461 -138203201 - MLT1F1 LTR MaLR -443 124 48 3132 191 90 104 chr4 46085461 46085847 -138202815 - L1MC3 LINE L1 -660 7125 6735 1880 173 116 10 chr4 46086398 46086785 -138201877 - MSTA LTR MaLR 0 428 1 2317 197 30 6 chr4 46087178 46087686 -138200976 - L1MB7 LINE L1 -15 6169 5650 453 97 42 0 chr4 46088167 46088239 -138200423 - L1P4 LINE L1 -683 5483 5409 * 1657 181 13 3 chr4 46088234 46088538 -138200124 + L1PA16 LINE L1 5756 6062 -104 391 254 18 0 chr4 46089241 46089351 -138199311 - MER94 DNA DNA -19 115 4 27 49 0 0 chr4 46089368 46089409 -138199253 + AT_rich Low_complexity Low_complexity 1 41 0 351 0 0 0 chr4 46089458 46089497 -138199165 + (CA)n Simple_repeat Simple_repeat 2 40 0 2826 164 3 23 chr4 46090000 46090875 -138197787 + L1PA15 LINE L1 4795 5651 -514 2142 159 43 22 chr4 46090875 46091291 -138197371 - MSTB LTR MaLR 0 426 2 5236 192 11 12 chr4 46091303 46092267 -138196395 - MSTB-int LTR MaLR -10 1641 679 2513 112 19 11 chr4 46092272 46092639 -138196023 + THE1C LTR MaLR 6 375 0 3503 193 18 5 chr4 46092640 46093313 -138195349 - MSTB-int LTR MaLR -969 682 1 2179 172 62 2 chr4 46093313 46093715 -138194947 - MSTB LTR MaLR 0 426 1 3148 137 4 0 chr4 46093721 46094224 -138194438 + L1PA15 LINE L1 5654 6158 -7 219 188 0 129 chr4 46094666 46094751 -138193911 + MIR SINE MIR 178 251 -11 22 99 0 0 chr4 46096441 46096512 -138192150 + AT_rich Low_complexity Low_complexity 1 71 0 307 294 145 56 chr4 46096966 46097180 -138191482 - MIR SINE MIR -17 245 13 283 29 0 0 chr4 46097247 46097282 -138191380 - MADE1 DNA Mariner 0 80 46 504 149 0 0 chr4 46097502 46097589 -138191073 + L1MA3 LINE L1 6218 6304 -1 966 197 71 4 chr4 46098201 46098455 -138190207 - Charlie5 DNA MER1_type 0 2624 2354 266 286 127 0 chr4 46098476 46098602 -138190060 - Charlie5 DNA MER1_type -2451 161 20 1848 232 120 17 chr4 46098864 46099329 -138189333 + MLT2B1 LTR ERVL 8 520 0 1141 92 12 0 chr4 46100761 46100934 -138187728 + (GAAA)n Simple_repeat Simple_repeat 2 176 0 501 295 20 0 chr4 46101085 46101234 -138187428 - MIR SINE MIR 0 262 111 545 291 24 0 chr4 46101238 46101403 -138187259 - MLT1H LTR MaLR 0 549 381 973 218 94 34 chr4 46101445 46101711 -138186951 - MLT1H LTR MaLR -252 297 16 1269 135 0 5 chr4 46101914 46102107 -138186555 - AluY SINE Alu 0 311 120 291 205 74 49 chr4 46103473 46103595 -138185067 - MIR SINE MIR -54 208 84 203 345 0 12 chr4 46103616 46103700 -138184962 + L2 LINE L2 2404 2486 -828 1353 255 60 58 chr4 46103726 46104260 -138184402 - L1MC5 LINE L1 -810 7151 6617 180 341 187 0 chr4 46104301 46104392 -138184270 - MIR SINE MIR -124 138 31 183 325 140 44 chr4 46105168 46105282 -138183380 - L2 LINE L2 -2 3270 3146 3641 145 72 13 chr4 46105446 46106116 -138182546 - L1PA16 LINE L1 -95 6071 5363 1072 193 0 5 chr4 46106114 46106332 -138182330 - L1 LINE L1 -2177 3969 3753 * 987 211 21 16 chr4 46106342 46106584 -138182078 - AluJb SINE Alu -4 308 66 5726 256 25 11 chr4 46106585 46108782 -138179880 - L1PA15-16 LINE L1 -2612 4237 2014 777 172 13 0 chr4 46108776 46108927 -138179735 - L1M4 LINE L1 -2200 3946 3794 * 2153 89 3 0 chr4 46110266 46110575 -138178087 - AluY SINE Alu 0 310 1 2026 129 6 10 chr4 46110658 46110969 -138177693 - AluSg SINE Alu 0 310 1 539 271 59 0 chr4 46111235 46111353 -138177309 + L2 LINE L2 3185 3309 -4 270 354 75 12 chr4 46111633 46111873 -138176789 + MLT1J LTR MaLR 257 511 0 229 176 44 73 chr4 46112686 46112754 -138175908 + Tigger5 DNA MER2_type 293 358 -1965 250 260 73 100 chr4 46112992 46113142 -138175520 - MIR SINE MIR -69 193 48 258 32 0 0 chr4 46113277 46113308 -138175354 + (TAGA)n Simple_repeat Simple_repeat 1 31 0 499 281 30 40 chr4 46113349 46113548 -138175114 + L2 LINE L2 2549 2745 -569 367 222 68 0 chr4 46113551 46113668 -138174994 + MER53 DNA DNA 10 134 -55 387 0 0 0 chr4 46113707 46113750 -138174912 + (TA)n Simple_repeat Simple_repeat 2 44 0 261 194 0 16 chr4 46113756 46113818 -138174844 - MER53 DNA DNA -125 64 4 283 337 20 0 chr4 46113818 46113916 -138174746 + L2 LINE L2 2770 2869 -445 397 295 91 55 chr4 46113985 46114239 -138174423 + L2 LINE L2 3049 3311 -2 1603 173 182 6 chr4 46115266 46115607 -138173055 + MSTA LTR MaLR 28 428 0 279 0 0 0 chr4 46115972 46116003 -138172659 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 10115 68 6 5 chr4 46116126 46118264 -138170398 - L1PA6 LINE L1 0 6154 4016 25408 111 15 12 chr4 46118266 46122121 -138166541 - L1PA6 LINE L1 -2268 3878 11 374 299 62 21 chr4 46122217 46122361 -138166301 + MIR3 SINE MIR 31 180 -28 322 223 9 62 chr4 46122723 46122835 -138165827 - L1ME3A LINE L1 -219 5951 5846 803 270 26 20 chr4 46122873 46123140 -138165522 - L1PA8 LINE L1 -325 5847 5580 615 330 68 63 chr4 46123143 46124052 -138164610 - L1MEd LINE L1 -4762 1548 602 24 32 0 0 chr4 46124588 46124619 -138164043 + AT_rich Low_complexity Low_complexity 1 31 0 292 179 26 0 chr4 46125722 46125800 -138162862 + (TA)n Simple_repeat Simple_repeat 1 80 0 312 261 35 162 chr4 46125883 46126167 -138162495 + MER102a DNA MER1_type 73 320 -10 337 336 141 0 chr4 46128943 46129071 -138159591 - MIR SINE MIR -15 247 102 319 340 39 55 chr4 46129225 46129481 -138159181 + MLT1K LTR MaLR 199 450 -138 2107 144 125 8 chr4 46129733 46130116 -138158546 - MSTA LTR MaLR 0 428 1 233 263 0 18 chr4 46130913 46130970 -138157692 + CT-rich Low_complexity Low_complexity 6 61 0 357 283 62 0 chr4 46132637 46132750 -138155912 + MIR SINE MIR 7 126 -136 5843 202 39 12 chr4 46132977 46134223 -138154439 - L1MC3 LINE L1 -18 7767 6488 253 323 20 0 chr4 46134279 46134378 -138154284 - MIR SINE MIR -10 252 152 1423 186 106 13 chr4 46135302 46135613 -138153049 - MER4D LTR ERV1 -17 886 547 2114 29 0 0 chr4 46135614 46135859 -138152803 - L1P2 LINE L1 -475 5680 5436 272 57 0 0 chr4 46135852 46135887 -138152775 + L1HS LINE L1 5915 5949 -206 * 1303 31 0 0 chr4 46135887 46136046 -138152616 + L1PA4 LINE L1 5996 6154 -1 2297 183 45 28 chr4 46136079 46136608 -138152054 - MER4D LTR ERV1 -334 538 1 455 307 125 0 chr4 46136782 46136958 -138151704 - MIR SINE MIR -30 232 35 311 281 141 37 chr4 46137001 46137328 -138151334 - MLT1J1 LTR MaLR -18 428 68 1253 220 96 41 chr4 46137355 46137719 -138150943 + MLT1B LTR MaLR 1 384 -6 25 31 0 0 chr4 46137812 46137844 -138150818 + AT_rich Low_complexity Low_complexity 1 32 0 660 221 0 22 chr4 46137855 46137991 -138150671 + FLAM_A SINE Alu 1 133 0 2063 137 124 18 chr4 46138324 46138711 -138149951 + MSTA LTR MaLR 1 428 0 244 111 0 0 chr4 46139355 46139391 -138149271 - MLT2B1 LTR ERVL 0 520 485 240 254 169 16 chr4 46139448 46139637 -138149025 - L1MC5 LINE L1 -271 7690 7473 2623 182 34 48 chr4 46139641 46140201 -138148461 + MER21A LTR ERV1 378 929 -2 1741 221 45 94 chr4 46140204 46140613 -138148049 - L1MC5 LINE L1 -569 7392 6965 2094 102 0 20 chr4 46140613 46140906 -138147756 + AluSg SINE Alu 1 287 -23 1741 221 45 94 chr4 46140906 46141154 -138147508 - L1MC5 LINE L1 -996 6965 6771 4254 181 6 38 chr4 46141154 46141973 -138146689 - MER54B LTR ERVL 0 793 1 1741 221 45 94 chr4 46141973 46142160 -138146502 - L1MC5 LINE L1 -1190 6771 6576 1559 256 98 26 chr4 46142370 46143138 -138145524 - L1MEc LINE L1 -4907 1489 667 324 157 52 7 chr4 46143138 46143291 -138145371 + (TA)n Simple_repeat Simple_repeat 2 161 0 1721 288 34 26 chr4 46143300 46143921 -138144741 - L1MEc LINE L1 -5732 664 39 468 329 52 9 chr4 46144142 46144373 -138144289 + L1ME3A LINE L1 5638 5878 -292 2157 106 72 29 chr4 46144704 46145052 -138143610 - THE1B LTR MaLR 0 364 2 11076 113 4 4 chr4 46145053 46146631 -138142031 - THE1B-int LTR MaLR 0 1580 2 2095 137 57 20 chr4 46146632 46146983 -138141679 - THE1B LTR MaLR 0 364 1 22 80 0 0 chr4 46147627 46147677 -138140985 + AT_rich Low_complexity Low_complexity 1 50 0 474 330 101 25 chr4 46148395 46148671 -138139991 + MLT1J2 LTR MaLR 33 329 -121 504 143 0 0 chr4 46148739 46148816 -138139846 + MER101 LTR ERV1 1 77 -397 * 1114 181 10 0 chr4 46148812 46149017 -138139645 - MER101 LTR ERV1 -7 467 261 1993 177 71 3 chr4 46149023 46149391 -138139271 + MER101 LTR ERV1 82 474 0 410 326 58 0 chr4 46149513 46149651 -138139011 + MIR SINE MIR 28 173 -89 819 151 0 32 chr4 46153630 46153816 -138134846 + CT-rich Low_complexity Low_complexity 1 180 0 337 351 155 0 chr4 46153888 46154056 -138134606 + MIR SINE MIR 15 208 -54 2422 201 76 86 chr4 46154127 46154920 -138133742 - L1MD2 LINE L1 -11 6231 5447 21 36 0 0 chr4 46155015 46155043 -138133619 + AT_rich Low_complexity Low_complexity 1 28 0 505 326 113 67 chr4 46155154 46155828 -138132834 - L2 LINE L2 -340 2974 2270 258 32 0 0 chr4 46159126 46159157 -138129505 + (TG)n Simple_repeat Simple_repeat 2 32 0 341 149 15 0 chr4 46159206 46159273 -138129389 + (TA)n Simple_repeat Simple_repeat 1 68 0 345 270 175 8 chr4 46159879 46160005 -138128657 + MLT1J2 LTR MaLR 399 545 -4 392 337 74 55 chr4 46160222 46160626 -138128036 + L3 LINE CR1 423 834 -743 3016 30 0 3 chr4 46160666 46161028 -138127634 - L1P3 LINE L1 -470 5684 5324 1727 73 0 0 chr4 46161028 46161259 -138127403 + L1PA7 LINE L1 5920 6151 -3 21 0 0 0 chr4 46162972 46162993 -138125669 + AT_rich Low_complexity Low_complexity 1 21 0 473 276 79 114 chr4 46164228 46164425 -138124237 - MLT1J1 LTR MaLR -59 391 214 198 0 0 0 chr4 46164425 46164447 -138124215 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 473 276 79 114 chr4 46164447 46164654 -138124008 - MLT1J1 LTR MaLR -236 214 1 24 0 0 0 chr4 46164794 46164818 -138123844 + AT_rich Low_complexity Low_complexity 1 24 0 2286 114 0 0 chr4 46164869 46165176 -138123486 - AluSg SINE Alu -3 307 1 320 208 91 26 chr4 46165520 46165597 -138123065 + MIR3 SINE MIR 81 162 -46 323 295 83 26 chr4 46166931 46167087 -138121575 - MIR3 SINE MIR -7 201 37 1995 158 3 0 chr4 46167686 46167996 -138120666 + AluSx SINE Alu 1 311 -1 1053 241 134 6 chr4 46168459 46168779 -138119883 + Charlie2b DNA MER1_type 200 560 -2222 302 100 0 0 chr4 46168781 46168821 -138119841 + AluSg/x SINE Alu 194 233 -69 268 255 49 49 chr4 46168852 46168954 -138119708 + Charlie2b DNA MER1_type 569 670 -2112 747 284 58 14 chr4 46169040 46169385 -138119277 + Charlie2a DNA MER1_type 1485 1844 -1018 2602 183 4 26 chr4 46169419 46169961 -138118701 - L1MA10 LINE L1 -7 6327 5798 2062 231 55 69 chr4 46169963 46170586 -138118076 - MLT1E1 LTR MaLR -9 645 32 647 196 86 94 chr4 46170597 46170852 -138117810 + Charlie2a DNA MER1_type 1841 2093 -769 311 320 88 52 chr4 46170875 46171275 -138117387 + MLT1J LTR MaLR 30 443 -68 26 30 0 0 chr4 46171759 46171792 -138116870 + AT_rich Low_complexity Low_complexity 1 33 0 208 308 33 66 chr4 46173100 46173191 -138115471 + L2 LINE L2 3116 3203 -69 185 302 135 10 chr4 46173347 46173443 -138115219 - MIR SINE MIR -5 257 150 4367 194 73 2 chr4 46173443 46173597 -138115065 - L1MA10 LINE L1 -1 6333 6191 270 0 0 0 chr4 46173597 46173627 -138115035 + (TTA)n Simple_repeat Simple_repeat 1 30 0 4367 194 73 2 chr4 46173627 46173673 -138114989 - L1MA10 LINE L1 -143 6191 6150 3233 164 11 6 chr4 46173673 46174197 -138114465 - MER1A DNA MER1_type 0 527 1 4367 194 73 2 chr4 46174197 46174911 -138113751 - L1MA10 LINE L1 -184 6150 5353 400 282 65 0 chr4 46174924 46175048 -138113614 - MIR SINE MIR -119 143 12 1505 182 59 76 chr4 46176005 46176346 -138112316 + LTR32 LTR ERVL 15 349 -122 792 205 0 6 chr4 46176389 46176545 -138112117 + LTR32 LTR ERVL 317 471 0 1619 217 68 52 chr4 46176663 46177160 -138111502 - MLT1D LTR MaLR 0 505 1 3278 136 41 2 chr4 46177158 46177665 -138110997 - MER1A DNA MER1_type 0 527 1 10585 113 10 2 chr4 46177961 46180405 -138108257 - L1PA8 LINE L1 0 6487 4060 1249 159 0 0 chr4 46180407 46180602 -138108060 - AluSg/x SINE Alu -6 306 112 752 181 0 0 chr4 46180624 46180757 -138107905 - FLAM_C SINE Alu 0 133 1 6706 173 22 24 chr4 46180758 46184221 -138104441 - L1PA8 LINE L1 -2390 4071 3 201 260 20 0 chr4 46186381 46186431 -138102231 - L2 LINE L2 -7 3306 3256 1371 180 85 20 chr4 46186792 46187086 -138101576 + MER2 DNA MER2_type 33 345 0 3816 212 44 1 chr4 46187466 46188668 -138099994 + L1M3 LINE L1 4376 5635 -677 1842 235 18 3 chr4 46188668 46189055 -138099607 - MER70A LTR ERVL 0 472 80 752 178 0 7 chr4 46189059 46189194 -138099468 - FLAM_C SINE Alu -9 134 1 461 192 13 0 chr4 46189195 46189273 -138099389 - MER70A LTR ERVL -393 79 1 690 192 7 34 chr4 46189276 46189422 -138099240 + L1M3 LINE L1 5634 5775 -559 598 143 19 54 chr4 46189446 46189573 -138099089 - MSTB1 LTR MaLR 0 432 306 568 234 0 0 chr4 46189595 46189702 -138098960 - FLAM_A SINE Alu -20 122 16 234 0 0 0 chr4 46189819 46189845 -138098817 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 26 50 0 0 chr4 46190664 46190704 -138097958 + AT_rich Low_complexity Low_complexity 1 40 0 182 333 45 36 chr4 46191108 46191219 -138097443 + MIR SINE MIR 14 125 -137 2211 246 78 58 chr4 46191489 46192356 -138096306 - L1ME2 LINE L1 0 6164 5280 182 396 31 44 chr4 46193310 46193469 -138095193 - L2 LINE L2 -1 3271 3115 2217 154 19 47 chr4 46193932 46194360 -138094302 - Tigger2a DNA MER2_type 0 434 19 356 211 21 0 chr4 46196345 46196440 -138092222 + (CATATA)n Simple_repeat Simple_repeat 5 101 0 462 300 89 59 chr4 46196909 46197212 -138091450 - L2 LINE L2 0 3313 3002 628 192 0 13 chr4 46197436 46197592 -138091070 + CT-rich Low_complexity Low_complexity 4 157 0 423 320 31 0 chr4 46197635 46197763 -138090899 - L2 LINE L2 -1 3312 3181 309 327 235 7 chr4 46197994 46198147 -138090515 - MER5A DNA MER1_type 0 189 2 527 198 9 9 chr4 46198364 46198475 -138090187 - LTR52 LTR ERVL -273 148 38 2118 114 7 3 chr4 46198476 46198784 -138089878 + AluSg SINE Alu 1 309 -1 1887 98 4 0 chr4 46199114 46199369 -138089293 + AluY SINE Alu 56 311 0 598 25 25 0 chr4 46199745 46199825 -138088837 + (TCTA)n Simple_repeat Simple_repeat 1 82 0 21 0 0 0 chr4 46199968 46199989 -138088673 + AT_rich Low_complexity Low_complexity 1 21 0 242 28 0 28 chr4 46200759 46200795 -138087867 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 296 253 44 22 chr4 46200882 46200973 -138087689 - MIR SINE MIR -75 187 95 601 297 80 55 chr4 46200974 46201338 -138087324 - MLT1I LTR MaLR -1 408 36 234 370 37 0 chr4 46201373 46201454 -138087208 - MIR SINE MIR -166 96 13 43 20 0 0 chr4 46203438 46203488 -138085174 + AT_rich Low_complexity Low_complexity 1 50 0 258 301 30 38 chr4 46203809 46203942 -138084720 + MIR SINE MIR 81 212 -50 411 268 9 0 chr4 46204449 46204561 -138084101 - MIR SINE MIR -26 236 124 293 309 81 52 chr4 46204977 46205113 -138083549 + MIR SINE MIR 49 188 -74 21 36 0 0 chr4 46206652 46206680 -138081982 + AT_rich Low_complexity Low_complexity 1 28 0 297 164 36 0 chr4 46207148 46207203 -138081459 - MLT2C1 LTR ERVL 0 520 464 518 164 25 19 chr4 46207209 46207368 -138081294 + (TA)n Simple_repeat Simple_repeat 1 160 0 1500 180 97 3 chr4 46207410 46207721 -138080941 - MLT2C1 LTR ERVL -57 340 1 1759 157 0 33 chr4 46211021 46211326 -138077336 - AluSx SINE Alu -14 298 4 21 36 0 0 chr4 46212311 46212339 -138076323 + AT_rich Low_complexity Low_complexity 1 28 0 372 305 23 15 chr4 46213026 46213157 -138075505 + MLT1I LTR MaLR 81 212 -197 201 347 24 24 chr4 46213881 46214005 -138074657 + L2 LINE L2 2937 3060 -212 21 0 0 0 chr4 46214087 46214108 -138074554 + AT_rich Low_complexity Low_complexity 1 21 0 201 196 0 0 chr4 46214198 46214249 -138074413 + CT-rich Low_complexity Low_complexity 2 52 0 22 0 0 0 chr4 46214796 46214818 -138073844 + AT_rich Low_complexity Low_complexity 1 22 0 1874 132 7 4 chr4 46214887 46215202 -138073460 + AluY SINE Alu 6 321 0 295 218 53 117 chr4 46215445 46215674 -138072988 - L1ME LINE L1 -408 5754 5558 381 323 60 8 chr4 46215674 46215909 -138072753 - L1M4 LINE L1 -2596 3550 3304 225 0 0 0 chr4 46215935 46215960 -138072702 + (T)n Simple_repeat Simple_repeat 1 25 0 231 262 71 40 chr4 46215960 46216086 -138072576 - L1M4 LINE L1 -3774 2372 2243 249 158 53 105 chr4 46216958 46217034 -138071628 - L1M4 LINE L1 -552 5632 5561 247 338 67 9 chr4 46217037 46217247 -138071415 - L1M4 LINE L1 -2596 3550 3329 225 0 0 0 chr4 46217302 46217327 -138071335 + (T)n Simple_repeat Simple_repeat 1 25 0 369 206 71 40 chr4 46217327 46217453 -138071209 - L1M4 LINE L1 -3774 2372 2243 1069 72 93 0 chr4 46218000 46218139 -138070523 - AluSq/x SINE Alu -161 152 1 2544 181 216 82 chr4 46218150 46219050 -138069612 - LTR28 LTR ERV1 0 1020 1 2413 71 0 0 chr4 46219248 46219558 -138069104 + AluY SINE Alu 1 310 -1 183 304 72 0 chr4 46219751 46219820 -138068842 + MER5A DNA MER1_type 88 161 -28 * 193 243 7 7 chr4 46219765 46219821 -138068841 - MER5B DNA MER1_type -95 94 21 2125 176 0 7 chr4 46221532 46221935 -138066727 - L1P4 LINE L1 -845 5301 4902 1779 146 7 0 chr4 46221936 46222237 -138066425 + L1P4 LINE L1 5316 5618 -547 2085 132 30 28 chr4 46222237 46222600 -138066062 + THE1B LTR MaLR 1 364 0 5635 88 9 6 chr4 46222600 46223382 -138065280 + THE1B-int LTR MaLR 1 784 -796 325 309 114 13 chr4 46223700 46223849 -138064813 - L2 LINE L2 0 3313 3150 615 248 41 0 chr4 46224550 46224734 -138063928 + AluJb SINE Alu 132 321 0 192 363 41 29 chr4 46225507 46225678 -138062984 - L2 LINE L2 -1294 2020 1848 251 297 139 0 chr4 46226374 46226475 -138062187 + MIR3 SINE MIR 87 201 -7 186 265 0 20 chr4 46229044 46229093 -138059569 - L2 LINE L2 -5 3267 3220 22 0 0 0 chr4 46229695 46229717 -138058945 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr4 46229914 46229952 -138058710 + AT_rich Low_complexity Low_complexity 1 38 0 210 143 0 0 chr4 46230172 46230207 -138058455 + (T)n Simple_repeat Simple_repeat 1 35 0 624 232 192 10 chr4 46230875 46231073 -138057589 + MIR SINE MIR 3 236 -26 410 345 74 13 chr4 46231240 46231469 -138057193 + MIR SINE MIR 17 259 -3 26 64 0 0 chr4 46231598 46231645 -138057017 + AT_rich Low_complexity Low_complexity 1 47 0 2037 118 7 3 chr4 46231868 46232174 -138056488 - AluSp SINE Alu -6 307 1 46 68 0 0 chr4 46232258 46232346 -138056316 + AT_rich Low_complexity Low_complexity 1 88 0 23 78 0 0 chr4 46232489 46232540 -138056122 + AT_rich Low_complexity Low_complexity 1 51 0 564 262 184 20 chr4 46232593 46233044 -138055618 - L1ME3 LINE L1 -216 5946 5422 3638 237 28 42 chr4 46233101 46234907 -138053755 - L1MCb LINE L1 -4771 1793 3 26 50 0 0 chr4 46235037 46235077 -138053585 + AT_rich Low_complexity Low_complexity 1 40 0 22 94 0 0 chr4 46235094 46235158 -138053504 + AT_rich Low_complexity Low_complexity 1 64 0 222 356 19 29 chr4 46235827 46235931 -138052731 + MER5B DNA MER1_type 21 123 -55 186 318 37 65 chr4 46237699 46237715 -138050947 - MER5B DNA MER1_type -48 130 115 1535 202 40 48 chr4 46237715 46238111 -138050551 + MLT2C1 LTR ERVL 5 397 0 186 318 37 65 chr4 46238111 46238201 -138050461 - MER5B DNA MER1_type -63 115 27 28 29 0 0 chr4 46238363 46238398 -138050264 + AT_rich Low_complexity Low_complexity 1 35 0 1207 229 23 49 chr4 46238467 46238773 -138049889 - AluJb SINE Alu -14 298 1 1057 172 13 12 chr4 46238785 46239005 -138049657 + L1MB7 LINE L1 5710 5928 -256 790 161 0 7 chr4 46239005 46239148 -138049514 + L1MB7 LINE L1 6034 6175 -9 1057 172 13 12 chr4 46239148 46239172 -138049490 + L1MB7 LINE L1 5928 6175 -9 2498 172 106 18 chr4 46239193 46239886 -138048776 + L1MB2 LINE L1 4727 5525 -646 1634 174 19 32 chr4 46239886 46240202 -138048460 - AluJo SINE Alu 0 312 1 2498 172 106 18 chr4 46240202 46240494 -138048168 + L1MB2 LINE L1 5525 5790 -381 499 99 74 6 chr4 46240514 46240676 -138047986 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 1485 184 59 6 chr4 46240681 46241001 -138047661 + L1MB2 LINE L1 5783 6119 -52 310 288 88 0 chr4 46241155 46241235 -138047427 - MIR SINE MIR -69 139 53 462 262 9 0 chr4 46241505 46241612 -138047050 - MER69 DNA AcHobo -2414 112 5 243 210 84 132 chr4 46242000 46242167 -138046495 + MIR SINE MIR 94 252 -10 234 250 83 56 chr4 46242403 46242547 -138046115 - L1MA9 LINE L1 -130 6182 6035 620 319 110 12 chr4 46244627 46244962 -138043700 - ERVL LTR ERVL -1236 4528 4161 734 350 78 43 chr4 46245486 46246164 -138042498 - ERVL LTR ERVL -2163 3491 2790 989 280 145 11 chr4 46246183 46246655 -138042007 + L1MC4a LINE L1 5312 5720 -2088 387 0 0 0 chr4 46246655 46246698 -138041964 + (TA)n Simple_repeat Simple_repeat 2 44 0 2166 108 0 3 chr4 46246700 46246995 -138041667 - AluY SINE Alu -17 294 1 989 280 145 11 chr4 46246995 46247051 -138041611 + L1MC4a LINE L1 5720 5914 -1894 9672 185 27 11 chr4 46247113 46249985 -138038677 - L1PB4 LINE L1 -1 6155 3242 2042 187 23 26 chr4 46250319 46250704 -138037958 + MLT2B3 LTR ERVL 1 384 -170 1317 297 153 30 chr4 46250705 46251445 -138037217 + L2 LINE L2 2045 2875 -439 387 266 7 77 chr4 46251484 46251627 -138037035 + MLT1H LTR MaLR 78 210 -339 5993 112 52 20 chr4 46251635 46254080 -138034582 + SVA Other Other 18 1385 -1 466 295 86 53 chr4 46254080 46254382 -138034280 + MLT1H LTR MaLR 209 520 -29 575 295 20 45 chr4 46254592 46254792 -138033870 + MLT1J2 LTR MaLR 3 197 -253 220 337 56 0 chr4 46254794 46254883 -138033779 + L2 LINE L2 3212 3305 -8 2165 219 105 48 chr4 46255028 46255639 -138033023 - MLT1E1 LTR MaLR -8 646 1 633 239 185 22 chr4 46255645 46255739 -138032923 + HAL1 LINE L1 1557 1634 -873 1141 232 78 99 chr4 46255739 46256313 -138032349 + MER68 LTR ERV1 1 562 0 633 239 185 22 chr4 46256313 46256494 -138032168 + HAL1 LINE L1 1634 1877 -630 232 125 83 0 chr4 46256616 46256712 -138031950 + (TATAA)n Simple_repeat Simple_repeat 1 104 0 45 69 0 0 chr4 46256731 46256818 -138031844 + AT_rich Low_complexity Low_complexity 1 87 0 975 127 17 0 chr4 46256849 46257022 -138031640 + (TA)n Simple_repeat Simple_repeat 2 177 0 354 85 0 0 chr4 46257022 46257069 -138031593 - Alu SINE Alu -9 291 245 237 341 11 11 chr4 46257073 46257161 -138031501 - MIR SINE MIR -15 247 160 21 36 0 0 chr4 46259473 46259501 -138029161 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr4 46260269 46260313 -138028349 + AT_rich Low_complexity Low_complexity 1 44 0 304 154 0 19 chr4 46260380 46260430 -138028232 + MLT1A1 LTR MaLR 1 49 -316 3997 174 58 33 chr4 46260430 46261472 -138027190 - MER11C LTR ERVK 0 1071 56 252 0 0 0 chr4 46261760 46261788 -138026874 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 627 348 68 65 chr4 46262456 46263449 -138025213 - HERVL LTR ERVL -1807 3847 2852 326 349 47 8 chr4 46263442 46263571 -138025091 - HERVL LTR ERVL -4102 1662 1529 * 197 286 15 135 chr4 46264319 46264388 -138024274 + L2 LINE L2 3180 3227 -86 1769 183 0 6 chr4 46264388 46264699 -138023963 - AluJb SINE Alu -3 309 1 197 286 15 135 chr4 46264699 46264762 -138023900 + L2 LINE L2 3227 3296 -17 28 0 0 0 chr4 46265512 46265540 -138023122 + AT_rich Low_complexity Low_complexity 1 28 0 292 342 92 0 chr4 46266339 46266459 -138022203 - L2 LINE L2 -4 3309 3179 565 288 217 21 chr4 46266583 46267003 -138021659 + LTR50 LTR ERVL 8 509 -286 341 347 50 57 chr4 46267254 46267554 -138021108 + L2 LINE L2 2233 2530 -784 678 258 14 70 chr4 46268197 46268410 -138020252 + MIR SINE MIR 40 240 -22 203 282 24 0 chr4 46268413 46268498 -138020164 + (TA)n Simple_repeat Simple_repeat 2 88 0 1041 300 53 45 chr4 46268507 46268679 -138019983 + L2 LINE L2 1927 2096 -1218 2206 139 5 39 chr4 46268679 46269067 -138019595 - THE1C LTR MaLR 0 375 1 1041 300 53 45 chr4 46269067 46269361 -138019301 + L2 LINE L2 2096 2397 -917 23 33 0 0 chr4 46269440 46269470 -138019192 + AT_rich Low_complexity Low_complexity 1 30 0 227 171 0 0 chr4 46269863 46269904 -138018758 + CT-rich Low_complexity Low_complexity 2 42 0 6283 104 0 23 chr4 46271594 46272691 -138015971 - L1PA3 LINE L1 -5 6150 5108 5283 37 1 0 chr4 46272691 46273337 -138015325 + L1PA3 LINE L1 4463 5109 -1037 283 307 20 10 chr4 46273829 46273930 -138014732 - MLT1I LTR MaLR -229 180 79 434 310 100 39 chr4 46275246 46275636 -138013026 + HAL1b LINE L1 322 735 -613 617 277 90 61 chr4 46275847 46276426 -138012236 + L1MC5 LINE L1 6476 6984 -824 1084 259 57 40 chr4 46276546 46276970 -138011692 + MLT1C LTR MaLR 37 467 0 21 0 0 0 chr4 46277136 46277157 -138011505 + AT_rich Low_complexity Low_complexity 1 21 0 5888 55 22 4 chr4 46278930 46279687 -138008975 + L1PA5 LINE L1 5384 6154 0 4187 226 16 35 chr4 46280142 46281558 -138007104 - L1MB3 LINE L1 0 6183 4798 1529 146 77 0 chr4 46281558 46281818 -138006844 - AluSx SINE Alu -12 300 21 4187 226 16 35 chr4 46281818 46281914 -138006748 - L1MB3 LINE L1 -1385 4798 4702 351 266 119 68 chr4 46281923 46282100 -138006562 + L1M4c LINE L1 1282 1467 -4917 284 250 88 38 chr4 46282102 46282262 -138006400 + L1M4c LINE L1 1635 1802 -4761 5216 209 31 17 chr4 46282351 46283655 -138005007 + L1M4c LINE L1 2603 3925 -2457 3975 180 30 25 chr4 46283639 46284963 -138003699 + L1MA1 LINE L1 4453 5847 -455 * 180 0 0 0 chr4 46284963 46284983 -138003679 + (TA)n Simple_repeat Simple_repeat 2 21 0 3975 180 30 25 chr4 46284983 46285442 -138003220 + L1MA1 LINE L1 5847 6302 0 581 262 63 4 chr4 46285438 46285709 -138002953 + L1ME1 LINE L1 2250 2536 -4027 * 756 238 12 0 chr4 46285709 46285873 -138002789 + L1 LINE L1 4742 4907 -1239 * 861 248 28 61 chr4 46285864 46286255 -138002407 + L1ME1 LINE L1 2477 2854 -3528 836 249 60 3 chr4 46286249 46286583 -138002079 + L1ME1 LINE L1 4607 4959 -1423 * 2535 240 39 40 chr4 46286632 46287402 -138001260 + L1ME1 LINE L1 5587 6355 -47 408 267 0 30 chr4 46287299 46287434 -138001228 + L1MA10 LINE L1 6416 6546 -24 * 213 196 0 0 chr4 46287442 46287488 -138001174 + GA-rich Low_complexity Low_complexity 3 48 0 2010 95 3 54 chr4 46287576 46287892 -138000770 + AluSq SINE Alu 1 300 -13 32 56 0 0 chr4 46288550 46288586 -138000076 + AT_rich Low_complexity Low_complexity 1 36 0 978 86 22 0 chr4 46288588 46288727 -137999935 - AluYa5 SINE Alu -30 281 140 2094 102 16 3 chr4 46289535 46289840 -137998822 - AluY SINE Alu 0 311 3 597 277 179 28 chr4 46290458 46290826 -137997836 - MLT1G LTR MaLR 0 590 114 377 253 99 50 chr4 46290902 46291123 -137997539 + MLT1J1 LTR MaLR 73 304 -142 27 62 0 0 chr4 46291418 46291466 -137997196 + AT_rich Low_complexity Low_complexity 1 48 0 28 0 0 0 chr4 46291665 46291693 -137996969 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 46292341 46292369 -137996293 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr4 46293300 46293332 -137995330 + AT_rich Low_complexity Low_complexity 1 32 0 311 307 13 13 chr4 46293332 46293484 -137995178 + MIR SINE MIR 45 196 -64 26 50 0 0 chr4 46294069 46294109 -137994553 + AT_rich Low_complexity Low_complexity 1 40 0 350 314 157 0 chr4 46294177 46294381 -137994281 - MIR SINE MIR -14 248 13 393 179 15 0 chr4 46294451 46294518 -137994144 + MER2 DNA MER2_type 1 68 -277 210 71 0 0 chr4 46294946 46294974 -137993688 + (T)n Simple_repeat Simple_repeat 1 28 0 249 136 0 85 chr4 46295966 46296025 -137992637 + MLT1D LTR MaLR 54 107 -519 328 179 0 0 chr4 46296064 46296120 -137992542 + MLT1D LTR MaLR 111 166 -460 518 244 9 0 chr4 46296127 46296242 -137992420 - FRAM SINE Alu -16 160 45 927 210 45 106 chr4 46296243 46296600 -137992062 + MLT1D LTR MaLR 169 503 -2 209 256 0 0 chr4 46296605 46296648 -137992014 + L2 LINE L2 3178 3220 -52 7031 182 41 65 chr4 46296900 46298588 -137990074 - MER52A LTR ERV1 0 1755 1 25 31 0 0 chr4 46299728 46299760 -137988902 + AT_rich Low_complexity Low_complexity 1 32 0 16892 201 37 16 chr4 46300554 46301613 -137987049 - L1PA13 LINE L1 -1 6813 5777 2913 100 23 11 chr4 46301613 46301997 -137986665 + MLT2A1 LTR ERVL 1 379 -65 459 0 0 0 chr4 46301997 46302048 -137986614 + (TA)n Simple_repeat Simple_repeat 2 52 0 204 40 0 0 chr4 46302052 46302077 -137986585 + (CA)n Simple_repeat Simple_repeat 2 26 0 2913 100 23 11 chr4 46302077 46302126 -137986536 + MLT2A1 LTR ERVL 381 444 0 16892 201 37 16 chr4 46302126 46306975 -137981687 - L1PA13 LINE L1 -1037 5777 774 1104 218 75 70 chr4 46306975 46307511 -137981151 - LTR25 LTR ERV1 -189 605 29 1034 252 5 0 chr4 46308149 46308371 -137980291 - MER58A DNA MER1_type 0 224 2 22 0 0 0 chr4 46308676 46308698 -137979964 + AT_rich Low_complexity Low_complexity 1 22 0 264 363 62 0 chr4 46308845 46308991 -137979671 - L2 LINE L2 -1192 2122 1968 188 246 98 0 chr4 46309030 46309091 -137979571 + L2 LINE L2 2775 2841 -473 21 0 0 0 chr4 46310474 46310495 -137978167 + AT_rich Low_complexity Low_complexity 1 21 0 561 229 78 39 chr4 46310514 46310673 -137977989 - L1MDa LINE L1 -2154 4386 4216 1149 220 163 3 chr4 46310673 46310973 -137977689 + MER7A DNA MER2_type 1 346 0 561 229 78 39 chr4 46310973 46311018 -137977644 - L1MDa LINE L1 -2324 4216 4174 658 289 120 11 chr4 46311020 46311553 -137977109 - L1MDa LINE L1 -2534 4006 3416 * 3492 235 51 30 chr4 46311546 46313124 -137975538 - L1MDa LINE L1 -3458 3082 1470 730 168 8 0 chr4 46313131 46313256 -137975406 + MSTA LTR MaLR 1 126 -302 1334 133 44 5 chr4 46313295 46313498 -137975164 + MER30 DNA MER1_type 20 230 0 * 1810 164 30 3 chr4 46313498 46313801 -137974861 + MSTA LTR MaLR 118 428 0 270 0 0 0 chr4 46313812 46313842 -137974820 + (TG)n Simple_repeat Simple_repeat 2 31 0 1183 198 118 3 chr4 46313846 46314185 -137974477 - L1MDa LINE L1 -5086 1454 1077 335 330 39 18 chr4 46314306 46314591 -137974071 + L1MEc LINE L1 1739 2029 -4367 273 262 40 60 chr4 46314589 46314837 -137973825 - L1MDa LINE L1 -3613 2927 2685 * 2936 199 20 5 chr4 46314913 46315647 -137973015 + L1P4 LINE L1 4697 5442 -724 1795 304 59 12 chr4 46315741 46316401 -137972261 - L1MDa LINE L1 -5460 1080 72 244 333 32 11 chr4 46316850 46316943 -137971719 + MIR SINE MIR 58 152 -110 370 318 45 11 chr4 46316961 46316992 -137971670 - L1M4 LINE L1 -2665 3481 3453 7343 29 3 0 chr4 46316992 46318376 -137970286 - L1PA4 LINE L1 -2 6153 4758 370 318 45 11 chr4 46318376 46318523 -137970139 - L1M4 LINE L1 -2693 3453 3297 308 336 0 0 chr4 46318874 46318987 -137969675 + L1 LINE L1 4596 4708 -1438 336 341 42 6 chr4 46319104 46319271 -137969391 + L1 LINE L1 4882 5054 -1092 404 283 131 30 chr4 46319639 46319876 -137968786 - L2 LINE L2 -755 2559 2299 233 272 0 0 chr4 46320251 46320332 -137968330 + L1MEc LINE L1 1020 1100 -5296 243 273 72 0 chr4 46320554 46320668 -137967994 + L1MEc LINE L1 1155 1279 -4834 374 272 90 107 chr4 46320684 46321085 -137967577 + L1MEc LINE L1 1414 1807 -4408 2827 242 41 25 chr4 46321133 46322214 -137966448 - L1MC/D LINE L1 -743 5403 4352 427 285 80 93 chr4 46322338 46322640 -137966022 + L2 LINE L2 3014 3311 -2 1667 254 66 17 chr4 46322788 46323260 -137965402 + MLT1D LTR MaLR 3 497 -8 317 303 56 0 chr4 46323327 46323416 -137965246 - LTR16C LTR ERVL -201 290 197 4398 242 122 16 chr4 46323490 46323761 -137964901 + L1MA9 LINE L1 7 248 -6920 2385 76 0 0 chr4 46323761 46324064 -137964598 + AluY SINE Alu 1 303 -8 4398 242 122 16 chr4 46324064 46324935 -137963727 + L1MA9 LINE L1 248 1270 -5898 1110 267 16 6 chr4 46324939 46325261 -137963401 + L1MA9 LINE L1 3170 3494 -3673 2275 237 5 99 chr4 46325269 46325331 -137963331 + L1MA9 LINE L1 5376 5442 -1725 1985 159 0 0 chr4 46325331 46325627 -137963035 + AluSx SINE Alu 1 296 -16 2275 237 5 99 chr4 46325627 46326348 -137962314 + L1MA9 LINE L1 5442 6085 -1082 672 226 5 25 chr4 46326367 46326551 -137962111 + L1P LINE L1 2352 2533 -3613 1580 199 3 3 chr4 46326551 46326838 -137961824 + AluJo SINE Alu 12 298 -14 3611 208 25 61 chr4 46326838 46327825 -137960837 + L1MA9 LINE L1 6344 7295 -38 805 281 34 34 chr4 46328678 46329002 -137959660 + L2 LINE L2 2455 2778 -536 401 304 77 17 chr4 46329002 46329183 -137959479 - MIR SINE MIR -34 228 37 219 114 0 0 chr4 46329446 46329481 -137959181 + (TC)n Simple_repeat Simple_repeat 2 36 0 235 277 119 30 chr4 46330065 46330166 -137958496 - L2 LINE L2 -1 3312 3203 251 298 0 24 chr4 46330210 46330294 -137958368 + GA-rich Low_complexity Low_complexity 3 84 0 223 295 143 38 chr4 46330733 46330838 -137957824 - MIR3 SINE MIR -4 204 89 29 94 0 0 chr4 46332365 46332450 -137956212 + AT_rich Low_complexity Low_complexity 1 85 0 354 310 65 65 chr4 46332923 46333168 -137955494 + MLT1I LTR MaLR 6 250 -159 1010 279 20 59 chr4 46333246 46333752 -137954910 - L1ME1 LINE L1 -24 6142 5657 1835 191 34 33 chr4 46333752 46334290 -137954372 - MLT2A2 LTR ERVL -12 542 1 1364 211 65 45 chr4 46334297 46334945 -137953717 - L1ME1 LINE L1 -525 5641 4993 306 250 0 0 chr4 46334983 46335063 -137953599 - L1MA10 LINE L1 -1 6333 6254 878 289 79 26 chr4 46335099 46335203 -137953459 - L1ME1 LINE L1 -1198 4948 4851 566 244 9 0 chr4 46335203 46335318 -137953344 + FLAM_A SINE Alu 1 116 -17 878 289 79 26 chr4 46335318 46335680 -137952982 - L1ME1 LINE L1 -1295 4851 4457 371 230 58 54 chr4 46335705 46335887 -137952775 - L1ME1 LINE L1 -1982 4164 3979 25 83 0 0 chr4 46335890 46335950 -137952712 + AT_rich Low_complexity Low_complexity 1 60 0 2131 187 41 0 chr4 46338410 46338822 -137949840 + MSTB1 LTR MaLR 2 430 -2 519 95 0 0 chr4 46339265 46339339 -137949323 + (TG)n Simple_repeat Simple_repeat 1 74 0 1817 167 3 0 chr4 46339808 46340107 -137948555 - AluSx SINE Alu -12 300 1 720 216 36 21 chr4 46340112 46340306 -137948356 - L1ME1 LINE L1 -2263 3883 3687 2622 176 13 40 chr4 46340353 46340882 -137947780 - MLT2B1 LTR ERVL -5 515 1 550 275 11 0 chr4 46340882 46341071 -137947591 - L1ME1 LINE L1 -2531 3615 3425 22 94 0 0 chr4 46341756 46341820 -137946842 + AT_rich Low_complexity Low_complexity 1 64 0 884 199 13 55 chr4 46342324 46342560 -137946102 + MER31B LTR ERV1 1 226 -240 1228 174 25 16 chr4 46342676 46342918 -137945744 + MER31B LTR ERV1 223 466 0 181 250 0 0 chr4 46343376 46343412 -137945250 - L2 LINE L2 -69 3203 3168 749 312 123 11 chr4 46343528 46343967 -137944695 - L2 LINE L2 -841 2473 1986 1098 139 14 43 chr4 46343967 46344176 -137944486 - L1MA8 LINE L1 -137 6154 5952 570 175 9 9 chr4 46344175 46344289 -137944373 + L1MA8 LINE L1 6160 6273 -18 * 1025 301 71 52 chr4 46344302 46344824 -137943838 - L2 LINE L2 -1296 2018 1487 2062 129 0 0 chr4 46344846 46345140 -137943522 - AluSx SINE Alu -18 294 1 1604 233 76 52 chr4 46345269 46345806 -137942856 - MLT2B3 LTR ERVL -4 550 1 250 341 39 31 chr4 46346379 46346508 -137942154 - MER91B DNA MER1_type -58 132 3 1458 225 51 34 chr4 46347062 46347529 -137941133 + MLT1D LTR MaLR 1 475 -30 234 91 0 0 chr4 46347771 46347804 -137940858 + (T)n Simple_repeat Simple_repeat 1 33 0 253 185 12 12 chr4 46347903 46347984 -137940678 + (TGAA)n Simple_repeat Simple_repeat 1 81 0 23 54 0 0 chr4 46348208 46348245 -137940417 + AT_rich Low_complexity Low_complexity 1 37 0 1085 122 6 0 chr4 46348443 46348599 -137940063 - AluYa5 SINE Alu -24 287 131 1332 193 117 9 chr4 46348827 46349153 -137939509 - MER46B DNA MER2_type 0 236 1 2611 48 0 3 chr4 46352314 46352624 -137936038 - AluY SINE Alu -2 309 1 21 0 0 0 chr4 46352626 46352647 -137936015 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chr4 46353291 46353341 -137935321 + AT_rich Low_complexity Low_complexity 1 50 0 288 169 39 0 chr4 46353500 46353577 -137935085 + (TA)n Simple_repeat Simple_repeat 1 80 0 24 32 0 0 chr4 46354660 46354691 -137933971 + AT_rich Low_complexity Low_complexity 1 31 0 394 209 35 0 chr4 46355358 46355473 -137933189 - MER96B DNA MER1_type? -58 359 241 1286 191 35 51 chr4 46355577 46355892 -137932770 - AluJo SINE Alu 0 312 3 1835 179 121 67 chr4 46356074 46356177 -137932485 - L1MA9 LINE L1 -38 6274 6178 180 77 0 0 chr4 46356177 46356203 -137932459 + (TG)n Simple_repeat Simple_repeat 1 26 0 1835 179 121 67 chr4 46356203 46356685 -137931977 - L1MA9 LINE L1 -134 6178 5657 1000 150 0 0 chr4 46356689 46356849 -137931813 + L1MA9 LINE L1 5505 5664 -648 23 0 0 0 chr4 46356975 46356998 -137931664 + AT_rich Low_complexity Low_complexity 1 23 0 31 44 0 0 chr4 46357311 46357356 -137931306 + AT_rich Low_complexity Low_complexity 1 45 0 225 281 0 16 chr4 46357876 46357940 -137930722 + MER117 DNA MER1_type 5 67 -130 342 337 84 12 chr4 46359356 46359522 -137929140 - LTR33 LTR ERVL -343 178 1 327 326 36 22 chr4 46360199 46360337 -137928325 - MIR SINE MIR -98 164 25 6344 83 8 3 chr4 46361710 46362777 -137925885 + L1PA8A LINE L1 5056 6127 -4 879 283 30 0 chr4 46362872 46363102 -137925560 + MIR SINE MIR 3 239 -23 903 282 163 20 chr4 46364007 46364506 -137924156 - MLT1F1 LTR MaLR 0 567 1 25 51 0 0 chr4 46364556 46364595 -137924067 + AT_rich Low_complexity Low_complexity 1 39 0 673 318 211 18 chr4 46365460 46365851 -137922811 - L2 LINE L2 -865 2449 2135 339 113 0 0 chr4 46365851 46365904 -137922758 + (CA)n Simple_repeat Simple_repeat 2 54 0 673 318 211 18 chr4 46365904 46366066 -137922596 - L2 LINE L2 -1179 2135 1789 533 313 41 38 chr4 46366206 46366340 -137922322 + L1M4 LINE L1 3146 3278 -2868 768 201 7 0 chr4 46366340 46366479 -137922183 + L1PB4 LINE L1 6004 6143 -13 533 313 41 38 chr4 46366479 46366767 -137921895 + L1M4 LINE L1 3278 3565 -2581 1091 220 20 24 chr4 46367013 46367268 -137921394 + MER119 DNA MER1_type 85 338 -245 238 147 0 0 chr4 46368247 46368281 -137920381 - MER3 DNA MER1_type -175 34 1 225 347 48 0 chr4 46368918 46369065 -137919597 + L1P1 LINE L1 5381 5534 -621 21 0 0 0 chr4 46369244 46369265 -137919397 + AT_rich Low_complexity Low_complexity 1 21 0 399 305 109 23 chr4 46369920 46370619 -137918043 + L1MC/D LINE L1 2418 3176 -2970 300 296 48 38 chr4 46370633 46370947 -137917715 + L1MC/D LINE L1 4103 4419 -1727 1075 260 183 46 chr4 46370947 46371467 -137917195 - MLT1E2 LTR MaLR -3 623 33 2033 127 140 11 chr4 46371793 46372171 -137916491 + MSTA LTR MaLR 2 428 0 5054 177 27 4 chr4 46372172 46373083 -137915579 + MSTA-int LTR MaLR 2 933 -718 1797 180 39 17 chr4 46373083 46373439 -137915223 + THE1C LTR MaLR 1 364 -11 9329 148 11 35 chr4 46373450 46375060 -137913602 + THE1C-int LTR MaLR 1 1571 -9 1370 146 158 82 chr4 46375069 46375399 -137913263 + THE1C LTR MaLR 1 375 0 4323 154 17 10 chr4 46375399 46376114 -137912548 + MSTA-int LTR MaLR 861 1580 0 1637 169 148 13 chr4 46376117 46376490 -137912172 + MSTA LTR MaLR 4 426 -2 354 331 115 32 chr4 46376538 46377034 -137911628 + L1MC/D LINE L1 4845 5381 -765 360 0 0 0 chr4 46377356 46377396 -137911266 + (TG)n Simple_repeat Simple_repeat 2 41 0 232 242 30 30 chr4 46377501 46377567 -137911095 + L1MC/D LINE L1 5467 5532 -2276 281 259 198 49 chr4 46377589 46377751 -137910911 - LTR16A LTR ERVL 0 450 265 217 333 37 44 chr4 46378629 46378764 -137909898 - MIR SINE MIR -89 173 40 1046 217 23 101 chr4 46379119 46379515 -137909147 - MLT1A1 LTR MaLR 0 365 1 958 76 0 0 chr4 46379578 46379696 -137908966 + AluY SINE Alu 1 118 -193 269 26 26 0 chr4 46379696 46379734 -137908928 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 342 336 0 18 chr4 46379955 46380068 -137908594 - MIR3 SINE MIR -31 177 67 441 273 0 48 chr4 46380358 46380399 -137908263 - MER103 DNA DNA -8 158 117 1728 197 52 50 chr4 46380399 46380821 -137907841 + MSTB LTR MaLR 4 426 0 441 273 0 48 chr4 46380821 46380944 -137907718 - MER103 DNA DNA -49 117 2 490 300 38 79 chr4 46382054 46382321 -137906341 + MIR SINE MIR 1 256 -6 1197 216 61 27 chr4 46382936 46383264 -137905398 - MER44D DNA MER2_type 0 609 1 469 238 115 30 chr4 46383377 46383612 -137905050 + Charlie5 DNA MER1_type 2369 2623 0 482 382 5 19 chr4 46384442 46384649 -137904013 + MIR3 SINE MIR 5 208 0 237 289 103 83 chr4 46384728 46384932 -137903730 - L2 LINE L2 -4 3309 3102 23 68 0 0 chr4 46385039 46385083 -137903579 + AT_rich Low_complexity Low_complexity 1 44 0 189 317 188 10 chr4 46385094 46385195 -137903467 - L2 LINE L2 -31 3282 3164 994 249 140 35 chr4 46385198 46385369 -137903293 + L1MCc LINE L1 17 169 -6254 2423 68 0 13 chr4 46385369 46385680 -137902982 + AluY SINE Alu 1 307 -4 994 249 140 35 chr4 46385680 46385930 -137902732 + L1MCc LINE L1 169 482 -5941 832 175 0 0 chr4 46386190 46386327 -137902335 + FAM SINE Alu 16 152 -33 276 100 0 0 chr4 46386338 46386378 -137902284 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 666 283 71 69 chr4 46386440 46386846 -137901816 + L1MCc LINE L1 738 1144 -5279 1700 185 27 18 chr4 46386907 46387236 -137901426 + MLT1A1 LTR MaLR 34 365 0 317 319 145 11 chr4 46387236 46387516 -137901146 + MLT1J1 LTR MaLR 126 443 -3 25 0 0 0 chr4 46388452 46388477 -137900185 + AT_rich Low_complexity Low_complexity 1 25 0 461 153 0 10 chr4 46388477 46388575 -137900087 - L1MA7 LINE L1 -6 6285 6189 4155 226 54 26 chr4 46389273 46390502 -137898160 - L1 LINE L1 -1062 5084 3822 249 33 0 0 chr4 46391530 46391560 -137897102 + (TG)n Simple_repeat Simple_repeat 2 31 0 1495 194 18 12 chr4 46391565 46391895 -137896767 - L1MB8 LINE L1 -3 6175 5844 2115 85 57 0 chr4 46392746 46393029 -137895633 - AluSx SINE Alu -13 299 1 259 302 67 20 chr4 46393358 46393507 -137895155 + MLT1J2 LTR MaLR 20 175 -275 27 49 0 0 chr4 46394172 46394213 -137894449 + AT_rich Low_complexity Low_complexity 1 41 0 2210 143 8 76 chr4 46395243 46395717 -137892945 + L1PB4 LINE L1 5715 6156 0 246 317 85 37 chr4 46396651 46396815 -137891847 - MER5B DNA MER1_type 0 178 7 383 163 59 7 chr4 46396920 46397073 -137891589 + (TA)n Simple_repeat Simple_repeat 1 161 0 184 296 74 25 chr4 46397188 46397269 -137891393 + MER5A DNA MER1_type 94 178 -11 1948 147 30 22 chr4 46397406 46397774 -137890888 + THE1C LTR MaLR 4 374 -1 212 393 0 12 chr4 46398008 46398092 -137890570 - MIR SINE MIR -155 107 25 30 0 0 0 chr4 46398360 46398390 -137890272 + AT_rich Low_complexity Low_complexity 1 30 0 5209 187 24 20 chr4 46398440 46400321 -137888341 - L1PA15 LINE L1 -1 6164 4280 486 282 21 32 chr4 46450781 46450969 -137837693 - MER101B LTR ERV1 -51 519 334 232 281 0 37 chr4 46451011 46451093 -137837569 - MER101B LTR ERV1 -479 91 13 378 0 0 0 chr4 46451810 46451852 -137836810 + (TA)n Simple_repeat Simple_repeat 2 43 0 1326 227 34 29 chr4 46451853 46452262 -137836400 + L1MC2 LINE L1 5934 6344 0 1350 248 70 22 chr4 46456309 46456709 -137831953 - LOR1b LTR ERV1 -42 419 1 1134 192 92 30 chr4 46456777 46457048 -137831614 - AluJb SINE Alu -14 288 1 214 284 126 11 chr4 46457262 46457357 -137831305 + MIR SINE MIR 124 229 -33 541 186 0 0 chr4 46458653 46458750 -137829912 - pTR5 LTR ERV1 -2282 156 60 266 147 54 88 chr4 46458750 46458843 -137829819 - LTR30 LTR ERV1 -75 627 227 2812 239 106 38 chr4 46458843 46459828 -137828834 - pTR5 LTR ERV1 -413 2025 974 280 164 0 119 chr4 46460066 46460105 -137828557 + MLT1I LTR MaLR 349 378 -31 1861 163 22 25 chr4 46460105 46460467 -137828195 + THE1B LTR MaLR 1 361 -3 280 164 0 119 chr4 46460467 46460494 -137828168 + MLT1I LTR MaLR 378 407 -2 367 154 51 0 chr4 46462253 46462331 -137826331 + MLT2A2 LTR ERVL 1 82 -371 9439 220 8 10 chr4 46462436 46464915 -137823747 - L1P LINE L1 -725 5426 2955 738 282 87 49 chr4 46464924 46465456 -137823206 - L1MEc LINE L1 -3429 2786 2235 252 176 29 15 chr4 46465473 46465541 -137823121 + (TA)n Simple_repeat Simple_repeat 1 69 0 236 205 26 8 chr4 46465560 46465677 -137822985 + (TA)n Simple_repeat Simple_repeat 2 120 0 210 118 0 0 chr4 46465681 46465715 -137822947 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1618 257 69 23 chr4 46465723 46466451 -137822211 - L1MEc LINE L1 -4151 2245 1485 21 36 0 0 chr4 46466668 46466696 -137821966 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr4 46467634 46467671 -137820991 + AT_rich Low_complexity Low_complexity 1 37 0 807 216 0 33 chr4 46468322 46468503 -137820159 + FRAM SINE Alu 2 176 0 2032 101 10 62 chr4 46468669 46468977 -137819685 - AluSx SINE Alu -20 292 1 2696 190 43 46 chr4 46469024 46469755 -137818907 - LTR1 LTR ERV1 -2 820 100 344 135 0 0 chr4 46469758 46469810 -137818852 - L1P LINE L1 -1976 4170 4119 1661 104 2 5 chr4 46469810 46470055 -137818607 - LTR12 LTR ERV1 -13 701 355 369 213 0 0 chr4 46470057 46470132 -137818530 - LTR30 LTR ERV1 -104 618 544 469 207 158 12 chr4 46470135 46470299 -137818363 - LTR12 LTR ERV1 -426 288 101 742 94 9 0 chr4 46470405 46470511 -137818151 - L1P LINE L1 -2064 4082 3976 498 191 0 0 chr4 46470720 46470804 -137817858 - L1M3 LINE L1 -406 5777 5694 23 92 0 0 chr4 46471437 46471502 -137817160 + AT_rich Low_complexity Low_complexity 1 65 0 1203 258 19 30 chr4 46471513 46471882 -137816780 - MLT1A2 LTR MaLR -7 367 3 199 346 28 19 chr4 46473831 46473938 -137814724 - MER5A DNA MER1_type -75 114 7 608 226 102 0 chr4 46473983 46474120 -137814542 - FRAM SINE Alu -25 151 1 1999 95 3 52 chr4 46474220 46474561 -137814101 + AluY SINE Alu 3 311 0 24 0 0 0 chr4 46474794 46474818 -137813844 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr4 46475519 46475543 -137813119 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr4 46475854 46475880 -137812782 + AT_rich Low_complexity Low_complexity 1 26 0 1118 153 0 0 chr4 46476070 46476233 -137812429 - AluSg/x SINE Alu -18 294 132 439 357 24 45 chr4 46476367 46476658 -137812004 + LTR16B LTR ERVL 39 323 -141 21 71 0 0 chr4 46477210 46477252 -137811410 + AT_rich Low_complexity Low_complexity 1 42 0 26 64 0 0 chr4 46477301 46477348 -137811314 + AT_rich Low_complexity Low_complexity 1 47 0 1792 156 7 30 chr4 46477770 46478072 -137810590 + AluSx SINE Alu 1 295 -17 23 54 0 0 chr4 46478240 46478277 -137810385 + AT_rich Low_complexity Low_complexity 1 37 0 312 287 104 9 chr4 46478590 46478705 -137809957 - MIR SINE MIR -13 249 124 1342 155 92 30 chr4 46478918 46479189 -137809473 + AluJb SINE Alu 1 288 -24 1809 188 70 22 chr4 46479257 46479657 -137809005 + LOR1b LTR ERV1 1 419 -42 22 56 0 0 chr4 46479806 46479842 -137808820 + AT_rich Low_complexity Low_complexity 1 36 0 230 132 0 113 chr4 46480293 46480346 -137808316 + L1MC3 LINE L1 6706 6752 -1033 5202 181 92 37 chr4 46480346 46481562 -137807100 + pTR5 LTR ERV1 743 2025 -413 323 125 54 76 chr4 46481562 46481654 -137807008 + LTR30 LTR ERV1 227 302 -75 2202 139 0 6 chr4 46481659 46481996 -137806666 + pTR5 LTR ERV1 168 502 -1936 * 31492 97 7 6 chr4 46481973 46486382 -137802280 + HERV9 LTR ERV1 17 4428 -3971 1054 153 0 0 chr4 46486389 46486575 -137802087 + LTR12 LTR ERV1 101 277 -437 295 273 10 0 chr4 46486575 46486674 -137801988 + LTR30 LTR ERV1 544 643 -79 1485 123 0 0 chr4 46486674 46486886 -137801776 + LTR12 LTR ERV1 480 691 -23 2338 190 85 11 chr4 46486896 46487705 -137800957 + L1MC3 LINE L1 6746 7766 -19 1905 145 6 28 chr4 46487816 46488134 -137800528 + AluSx SINE Alu 1 311 -1 215 440 0 0 chr4 46488203 46488287 -137800375 - L2 LINE L2 0 3272 3189 241 370 125 18 chr4 46488331 46488555 -137800107 + L2 LINE L2 2846 3093 -220 220 203 145 29 chr4 46489008 46489077 -137799585 - MIR SINE MIR -121 141 65 317 24 0 0 chr4 46490208 46490250 -137798412 - L1P LINE L1 -1017 5129 5088 6920 16 1 0 chr4 46490250 46491043 -137797619 + L1PA2 LINE L1 5356 6153 -2 198 71 0 0 chr4 46491104 46491132 -137797530 + (A)n Simple_repeat Simple_repeat 1 28 0 3749 136 80 13 chr4 46491133 46491812 -137796850 + L1PB1 LINE L1 5428 6151 0 10562 220 46 18 chr4 46491819 46492017 -137796645 + L1MB1 LINE L1 2112 2303 -3865 1680 165 7 26 chr4 46492017 46492320 -137796342 - AluJb SINE Alu -9 303 7 10562 220 46 18 chr4 46492320 46494534 -137794128 + L1MB1 LINE L1 2303 4680 -1488 1981 105 0 60 chr4 46494534 46494848 -137793814 - AluY SINE Alu -16 295 1 10562 220 46 18 chr4 46494848 46496380 -137792282 + L1MB1 LINE L1 4680 6167 -1 23 54 0 0 chr4 46496877 46496914 -137791748 + AT_rich Low_complexity Low_complexity 1 37 0 180 163 47 47 chr4 46497098 46497141 -137791521 - L2 LINE L2 0 3313 3271 396 331 76 0 chr4 46497756 46497928 -137790734 + MIR SINE MIR 69 253 -9 3504 176 18 15 chr4 46498113 46498784 -137789878 + L1PB4 LINE L1 5437 6109 -47 26 30 0 0 chr4 46499147 46499180 -137789482 + AT_rich Low_complexity Low_complexity 1 33 0 815 263 48 67 chr4 46500014 46500489 -137788173 - LTR37B LTR ERV1 -2 466 1 23 33 0 0 chr4 46500829 46500859 -137787803 + AT_rich Low_complexity Low_complexity 1 30 0 30 100 0 0 chr4 46501891 46501991 -137786671 + AT_rich Low_complexity Low_complexity 1 100 0 282 216 67 75 chr4 46502662 46502796 -137785866 + L2 LINE L2 3105 3237 -76 379 304 82 82 chr4 46502797 46503054 -137785608 - L2 LINE L2 -432 2882 2626 6236 103 72 25 chr4 46503687 46504710 -137783952 + MER11C LTR ERVK 1 1071 0 26 0 0 0 chr4 46504916 46504942 -137783720 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr4 46505100 46505121 -137783541 + AT_rich Low_complexity Low_complexity 1 21 0 472 286 140 60 chr4 46505683 46505918 -137782744 - L1ME2 LINE L1 0 6233 6018 2223 182 9 23 chr4 46505918 46506358 -137782304 + Tigger2a DNA MER2_type 1 434 0 472 286 140 60 chr4 46506358 46507078 -137781584 - L1ME2 LINE L1 -215 6018 5204 782 273 15 8 chr4 46507198 46507465 -137781197 - L1ME2 LINE L1 -5477 919 651 406 253 8 48 chr4 46507621 46507660 -137781002 - L1MC4a LINE L1 -1062 6746 6707 1669 186 8 51 chr4 46507660 46508052 -137780610 + THE1C LTR MaLR 1 375 0 406 253 8 48 chr4 46508052 46508162 -137780500 - L1MC4a LINE L1 -1101 6707 6627 1294 196 29 7 chr4 46508202 46508482 -137780180 + L1MA9 LINE L1 5989 6274 -38 1491 131 7 25 chr4 46508635 46508910 -137779752 + L1MA2 LINE L1 6035 6304 0 33 0 0 0 chr4 46508910 46508943 -137779719 + AT_rich Low_complexity Low_complexity 1 33 0 339 316 124 18 chr4 46508963 46509188 -137779474 + MIR SINE MIR 11 259 -3 287 339 37 32 chr4 46509433 46509484 -137779178 + Charlie2 DNA MER1_type 281 330 -2452 1512 184 87 0 chr4 46509484 46509750 -137778912 - AluJb SINE Alu -18 294 6 287 339 37 32 chr4 46509750 46509887 -137778775 + Charlie2 DNA MER1_type 330 470 -2312 306 73 0 0 chr4 46510405 46510446 -137778216 + (TG)n Simple_repeat Simple_repeat 2 42 0 321 280 93 8 chr4 46510605 46510723 -137777939 - MIR SINE MIR -32 230 103 565 225 267 0 chr4 46511341 46511577 -137777085 + MER33 DNA MER1_type 4 302 -22 25 0 0 0 chr4 46511983 46512008 -137776654 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr4 46512226 46512250 -137776412 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr4 46512565 46512596 -137776066 + AT_rich Low_complexity Low_complexity 1 31 0 203 267 0 0 chr4 46512910 46512955 -137775707 + A-rich Low_complexity Low_complexity 5 49 0 21 0 0 0 chr4 46513022 46513043 -137775619 + AT_rich Low_complexity Low_complexity 1 21 0 1959 116 55 3 chr4 46513600 46513893 -137774769 + AluSq SINE Alu 1 308 -5 22 0 0 0 chr4 46514745 46514767 -137773895 + AT_rich Low_complexity Low_complexity 1 22 0 3586 328 100 19 chr4 46515599 46517473 -137771189 - L2 LINE L2 -341 2973 949 274 345 30 24 chr4 46517600 46517768 -137770894 + MIR SINE MIR 94 262 0 396 0 0 0 chr4 46519767 46519811 -137768851 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1428 210 37 30 chr4 46519816 46520220 -137768442 + L1MC2 LINE L1 5938 6344 0 27 100 0 0 chr4 46520628 46520718 -137767944 + AT_rich Low_complexity Low_complexity 1 90 0 23 54 0 0 chr4 46520833 46520870 -137767792 + AT_rich Low_complexity Low_complexity 1 37 0 278 327 9 9 chr4 46521622 46521729 -137766933 - MLT1L LTR MaLR -381 234 128 26 30 0 0 chr4 46521877 46521910 -137766752 + AT_rich Low_complexity Low_complexity 1 33 0 22 70 0 0 chr4 46521974 46522017 -137766645 + AT_rich Low_complexity Low_complexity 1 43 0 36 53 0 0 chr4 46522145 46522202 -137766460 + AT_rich Low_complexity Low_complexity 1 57 0 654 155 0 0 chr4 46522202 46522299 -137766363 - U6 snRNA snRNA -6 101 5 22 35 0 0 chr4 46522341 46522370 -137766292 + AT_rich Low_complexity Low_complexity 1 29 0 27 62 0 0 chr4 46522385 46522433 -137766229 + AT_rich Low_complexity Low_complexity 1 48 0 302 274 102 38 chr4 46522495 46522681 -137765981 - MIR SINE MIR 0 262 65 330 258 70 38 chr4 46522697 46522883 -137765779 + L1ME LINE L1 5600 5791 -330 22 80 0 0 chr4 46523251 46523301 -137765361 + AT_rich Low_complexity Low_complexity 1 50 0 1751 141 22 0 chr4 46523812 46524089 -137764573 + AluSx SINE Alu 5 287 -25 950 205 129 23 chr4 46524161 46524424 -137764238 - MLT1A2 LTR MaLR 0 374 84 4509 114 91 121 chr4 46524427 46525856 -137762806 + pTR5 LTR ERV1 743 2437 -1 416 208 0 0 chr4 46525863 46525940 -137762722 - MLT1A2 LTR MaLR -293 81 5 3605 97 31 24 chr4 46526133 46526709 -137761953 - LTR19B LTR ERV1 0 580 1 206 313 28 76 chr4 46526916 46527060 -137761602 - L2 LINE L2 -559 2755 2619 299 259 15 38 chr4 46527099 46527230 -137761432 + LTR37B LTR ERV1 331 458 -10 1497 213 148 16 chr4 46527287 46527734 -137760928 + LTR22 LTR ERVK 4 509 0 255 97 32 16 chr4 46527912 46527974 -137760688 + T-rich Low_complexity Low_complexity 3 65 0 1403 253 101 64 chr4 46528173 46528735 -137759927 + MLT1E2 LTR MaLR 44 626 0 304 272 61 69 chr4 46529072 46529418 -137759244 + MER31-int LTR ERV1 3400 3742 -1194 5941 211 61 66 chr4 46529434 46531085 -137757577 - MER52A LTR ERV1 0 1755 1 417 284 21 77 chr4 46531154 46531348 -137757314 + MER31-int LTR ERV1 3818 4000 -936 1164 261 19 21 chr4 46531664 46532039 -137756623 + LTR37B LTR ERV1 87 460 -8 216 350 27 73 chr4 46532049 46532418 -137756244 - L2 LINE L2 -736 2578 2227 493 333 103 81 chr4 46533315 46533859 -137754803 + L1MEd LINE L1 3 558 -5561 220 273 61 15 chr4 46534677 46534743 -137753919 - L2 LINE L2 -1 3312 3244 380 203 61 101 chr4 46535226 46535374 -137753288 - MLT1D LTR MaLR 0 505 364 291 278 69 0 chr4 46535512 46535584 -137753078 - MLT1D LTR MaLR -144 361 285 275 220 83 13 chr4 46535710 46535822 -137752840 - MLT1D LTR MaLR 0 505 349 285 276 112 10 chr4 46536000 46536098 -137752564 - MLT1D LTR MaLR -146 359 252 976 217 31 18 chr4 46536161 46536293 -137752369 - MLT1D LTR MaLR -276 229 91 2455 91 27 19 chr4 46536293 46536665 -137751997 + THE1C LTR MaLR 1 375 0 976 217 31 18 chr4 46536665 46536758 -137751904 - MLT1D LTR MaLR -414 91 1 325 229 24 12 chr4 46536759 46536842 -137751820 + MIR SINE MIR 82 165 -97 239 286 14 0 chr4 46536856 46536926 -137751736 + (TA)n Simple_repeat Simple_repeat 2 72 0 26 30 0 0 chr4 46537034 46537067 -137751595 + AT_rich Low_complexity Low_complexity 1 33 0 184 375 36 27 chr4 46537308 46537420 -137751242 + MIR SINE MIR 15 127 -135 1776 160 0 23 chr4 46538117 46538417 -137750245 - AluSx SINE Alu -19 293 1 312 327 132 24 chr4 46538808 46539013 -137749649 + HAL1b LINE L1 61 287 -1061 253 209 15 30 chr4 46539026 46539093 -137749569 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 2047 136 3 0 chr4 46539739 46540034 -137748628 + AluSq SINE Alu 2 297 -16 186 43 0 0 chr4 46540202 46540225 -137748437 + (T)n Simple_repeat Simple_repeat 1 23 0 3242 16 0 0 chr4 46540230 46540601 -137748061 - L1PA2 LINE L1 0 6155 5785 3465 38 0 0 chr4 46540601 46541023 -137747639 + L1P LINE L1 4737 5158 -988 330 287 9 26 chr4 46541035 46541150 -137747512 + MIR SINE MIR 103 215 -47 2370 84 0 3 chr4 46541155 46541454 -137747208 - AluY SINE Alu -13 298 1 29 47 0 0 chr4 46541463 46541506 -137747156 + AT_rich Low_complexity Low_complexity 1 43 0 4079 137 219 28 chr4 46542019 46542981 -137745681 - MER11B LTR ERVK 0 1236 1 365 292 138 64 chr4 46543194 46543541 -137745121 - L1ME3 LINE L1 -242 5920 5557 2259 124 0 0 chr4 46544726 46545085 -137743577 - AluSg SINE Alu 0 359 1 4879 161 139 115 chr4 46545126 46546609 -137742053 + pTR5 LTR ERV1 731 2438 0 1988 244 18 15 chr4 46548009 46548558 -137740104 + L1MB4 LINE L1 5623 6173 -7 551 236 52 29 chr4 46549346 46549520 -137739142 - LTR41 LTR ERVL -591 182 5 1748 245 33 59 chr4 46550379 46550444 -137738218 - L1ME1 LINE L1 -59 6125 6060 2221 74 0 7 chr4 46550444 46550757 -137737905 - AluY SINE Alu 0 311 1 1748 245 33 59 chr4 46550757 46551275 -137737387 - L1ME1 LINE L1 -124 6060 5564 1997 113 0 36 chr4 46551275 46551577 -137737085 + AluY SINE Alu 7 297 -14 1748 245 33 59 chr4 46551577 46551655 -137737007 - L1ME1 LINE L1 -620 5564 5486 402 159 129 38 chr4 46551689 46551821 -137736841 - L1MB7 LINE L1 -7 6177 6034 364 317 97 68 chr4 46551846 46552155 -137736507 - L1M4c LINE L1 -6035 349 32 2199 161 28 0 chr4 46552743 46553096 -137735566 - THE1B LTR MaLR 0 364 2 400 281 26 26 chr4 46553117 46553231 -137735431 + MER91B DNA MER1_type 25 138 -52 224 130 22 0 chr4 46554542 46554588 -137734074 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 1223 150 20 47 chr4 46555896 46556149 -137732513 + MER4D LTR ERV1 1 246 -657 3490 153 38 10 chr4 46556249 46556857 -137731805 + MER4D LTR ERV1 277 901 -2 1996 171 38 55 chr4 46557188 46557732 -137730930 - MLT2A2 LTR ERVL -8 546 1 21 57 0 0 chr4 46557919 46557954 -137730708 + AT_rich Low_complexity Low_complexity 1 35 0 478 244 0 67 chr4 46559489 46559516 -137729146 - MLT1I LTR MaLR -2 407 380 2125 135 22 25 chr4 46559516 46559878 -137728784 - THE1B LTR MaLR -3 361 1 478 244 0 67 chr4 46559878 46559969 -137728693 - MLT1I LTR MaLR -29 380 297 293 252 76 69 chr4 46560163 46560294 -137728368 - MLT1I LTR MaLR -268 141 10 765 221 92 31 chr4 46560315 46560510 -137728152 - MER63A DNA MER1_type -3 207 1 259 240 40 0 chr4 46561379 46561454 -137727208 + L1ME3A LINE L1 4633 4710 -1436 451 326 75 15 chr4 46561601 46562366 -137726296 + L1ME3A LINE L1 4906 5721 -449 236 344 0 0 chr4 46562372 46562436 -137726226 + MIR SINE MIR 11 74 -188 389 296 101 17 chr4 46562471 46562650 -137726012 + L1ME3A LINE L1 5754 5947 -223 370 49 33 0 chr4 46563782 46563843 -137724819 + (TA)n Simple_repeat Simple_repeat 2 64 0 801 137 192 0 chr4 46564122 46564268 -137724394 + L1PA16 LINE L1 5 178 -7403 1912 156 99 13 chr4 46564270 46564655 -137724007 + MSTA LTR MaLR 11 428 0 8338 195 40 0 chr4 46564655 46566242 -137722420 + MSTA-int LTR MaLR 1 1651 0 1156 110 42 16 chr4 46566242 46566433 -137722229 + MSTA LTR MaLR 1 196 -232 228 216 20 0 chr4 46566433 46566484 -137722178 + LTR30 LTR ERV1 1 52 -670 1430 62 273 217 chr4 46566484 46566917 -137721745 + LTR12 LTR ERV1 53 509 -205 6149 202 40 74 chr4 46566917 46568284 -137720378 + L1PA16 LINE L1 4122 5533 -2071 5318 198 16 9 chr4 46568284 46570181 -137718481 + L1PA14 LINE L1 4253 6159 -2 6149 202 40 74 chr4 46570181 46570395 -137718267 + L1PA16 LINE L1 5533 5753 -1851 519 139 0 57 chr4 46570395 46570517 -137718145 + Tigger7 DNA MER2_type 2362 2476 -111 6149 202 40 74 chr4 46570517 46572424 -137716238 + L1PA16 LINE L1 5753 7595 -9 214 185 0 46 chr4 46572427 46572492 -137716170 + A-rich Low_complexity Low_complexity 5 66 0 1275 247 22 10 chr4 46572716 46573028 -137715634 - MLT-int LTR MaLR -1109 626 311 * 2516 252 51 8 chr4 46573024 46573612 -137715050 + MSTD-int LTR MaLR 1123 1735 0 621 202 219 84 chr4 46573614 46573961 -137714701 + MSTD LTR MaLR 3 396 0 26 64 0 0 chr4 46574391 46574438 -137714224 + AT_rich Low_complexity Low_complexity 1 47 0 26 82 0 0 chr4 46574557 46574618 -137714044 + AT_rich Low_complexity Low_complexity 1 61 0 298 229 0 29 chr4 46575100 46575170 -137713492 + MER101B LTR ERV1 24 91 -479 739 223 39 60 chr4 46575212 46575445 -137713217 + MER101B LTR ERV1 236 459 -15 286 135 0 58 chr4 46575976 46576028 -137712634 + LTR57-int LTR ERVL 303 351 -4992 457 198 38 24 chr4 46576355 46576559 -137712103 + MER34 LTR ERV1 122 358 -184 443 255 57 25 chr4 46576571 46576728 -137711934 + LOR1-int LTR ERV1 1166 1327 -459 314 273 0 118 chr4 46576806 46576916 -137711746 + LOR1-int LTR ERV1 3786 3882 -4238 540 222 0 59 chr4 46577533 46577668 -137710994 + LOR1-int LTR ERV1 6970 7096 -1024 1125 260 120 29 chr4 46577708 46578150 -137710512 + MER101B LTR ERV1 24 505 -65 351 0 0 0 chr4 46578166 46578205 -137710457 + (TA)n Simple_repeat Simple_repeat 1 39 0 1080 334 58 27 chr4 46578250 46579236 -137709426 - MERVL LTR ERVL -1982 3503 2572 779 287 79 63 chr4 46579388 46579931 -137708731 - L1ME LINE L1 -5417 653 102 2312 81 0 7 chr4 46580043 46580341 -137708321 - AluY SINE Alu 0 311 16 263 170 0 19 chr4 46580372 46580425 -137708237 - L1MDa LINE L1 -4643 1897 1846 369 341 16 0 chr4 46580428 46580551 -137708111 - LTR16A LTR ERVL -125 325 201 351 0 0 0 chr4 46580717 46580756 -137707906 + (CA)n Simple_repeat Simple_repeat 2 40 0 1699 216 18 0 chr4 46581907 46582235 -137706427 - MSTB1 LTR MaLR -98 334 1 189 94 0 0 chr4 46583759 46583791 -137704871 + (TA)n Simple_repeat Simple_repeat 1 32 0 1634 172 51 0 chr4 46585147 46585420 -137703242 - AluJb SINE Alu -25 287 1 361 323 24 67 chr4 46586155 46586409 -137702253 + MIR SINE MIR 19 261 -1 634 272 40 44 chr4 46587516 46587766 -137700896 - MER46C DNA MER2_type -4 334 86 533 264 134 10 chr4 46588058 46588259 -137700403 - MIR SINE MIR -22 240 15 3936 32 36 14 chr4 46589307 46589667 -137698995 - L1PA4 LINE L1 -1 6154 5778 2901 13 0 0 chr4 46589667 46589985 -137698677 - AluYb8 SINE Alu 0 318 1 3936 32 36 14 chr4 46589985 46590128 -137698534 - L1PA4 LINE L1 -377 5778 5640 21 57 0 0 chr4 46590216 46590251 -137698411 + AT_rich Low_complexity Low_complexity 1 35 0 5547 105 179 117 chr4 46590880 46592321 -137696341 + pTR5 LTR ERV1 29 714 0 470 237 51 39 chr4 46593589 46593745 -137694917 + MIR SINE MIR 92 249 -13 588 210 41 54 chr4 46593961 46594218 -137694444 - LOR1-int LTR ERV1 -1762 4902 3059 1273 312 144 9 chr4 46594254 46594908 -137693754 - L2 LINE L2 -953 2361 1620 2727 236 21 58 chr4 46595127 46595778 -137692884 - MLT1A1-int LTR MaLR -967 768 95 2419 101 6 0 chr4 46595778 46596123 -137692539 + L1PA7 LINE L1 5789 6135 -19 381 58 0 0 chr4 46596123 46596175 -137692487 + (CATA)n Simple_repeat Simple_repeat 3 54 0 2727 236 21 58 chr4 46596175 46596318 -137692344 - MLT1A1-int LTR MaLR -1638 97 2 1437 214 61 12 chr4 46596321 46596667 -137691995 - MLT1A1 LTR MaLR -2 363 1 8576 219 70 21 chr4 46596694 46597391 -137691271 + L1MC3 LINE L1 4978 5639 -2146 16496 43 7 0 chr4 46597391 46600196 -137688466 + L1PA4 LINE L1 3350 6152 -3 8576 219 70 21 chr4 46600196 46601335 -137687327 + L1MC3 LINE L1 5639 6994 -791 260 27 27 0 chr4 46601335 46601372 -137687290 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 8576 219 70 21 chr4 46601372 46602204 -137686458 + L1MC3 LINE L1 6994 7784 -1 21 0 0 0 chr4 46602540 46602561 -137686101 + AT_rich Low_complexity Low_complexity 1 21 0 254 210 173 12 chr4 46602898 46602979 -137685683 - MLT1L LTR MaLR 0 615 522 180 341 109 14 chr4 46603632 46603770 -137684892 - MIR SINE MIR -75 187 37 203 179 0 0 chr4 46603921 46603960 -137684702 + A-rich Low_complexity Low_complexity 1 39 0 9707 202 23 8 chr4 46604841 46608101 -137680561 - L1MA4 LINE L1 -7 6995 3685 5599 251 57 78 chr4 46608084 46610324 -137678338 - L1MA4 LINE L1 -4652 2197 6 * 2312 62 7 26 chr4 46610427 46610735 -137677927 + AluY SINE Alu 1 302 -9 5313 59 9 0 chr4 46610788 46611464 -137677198 - L1PA7 LINE L1 0 6154 5473 15678 104 15 4 chr4 46611464 46613925 -137674737 + L1PA7 LINE L1 3005 5487 -685 368 71 0 0 chr4 46614216 46614272 -137674390 + L1PA6 LINE L1 6099 6154 0 231 114 0 0 chr4 46614414 46614449 -137674213 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr4 46615083 46615111 -137673551 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 46615310 46615338 -137673324 + AT_rich Low_complexity Low_complexity 1 28 0 1930 159 0 7 chr4 46615363 46615672 -137672990 + AluJb SINE Alu 1 307 -5 2232 121 0 0 chr4 46615836 46616134 -137672528 - AluSg SINE Alu -12 298 1 1523 189 40 0 chr4 46616794 46617069 -137671593 - AluJo SINE Alu -6 306 21 1826 195 147 20 chr4 46617477 46617933 -137670729 - MLT2B1 LTR ERVL 0 520 7 2397 70 0 7 chr4 46618061 46618359 -137670303 - AluY SINE Alu -14 297 2 1574 277 80 15 chr4 46618422 46619490 -137669172 - L1ME2 LINE L1 -210 5954 4817 23 0 0 0 chr4 46619491 46619514 -137669148 + AT_rich Low_complexity Low_complexity 1 23 0 2295 131 45 13 chr4 46619899 46620297 -137668365 - L1PA15 LINE L1 -10 6155 5745 508 206 58 152 chr4 46620328 46620605 -137668057 + MLT1B LTR MaLR 1 251 -139 432 205 0 0 chr4 46620618 46620696 -137667966 + MER31A LTR ERV1 9 86 -399 1277 196 4 22 chr4 46620698 46620969 -137667693 + MER31A LTR ERV1 220 485 0 404 220 33 0 chr4 46620969 46621059 -137667603 + MLT1B LTR MaLR 252 344 -46 300 381 23 6 chr4 46621073 46621246 -137667416 - L1MEd LINE L1 -5902 217 42 22 0 0 0 chr4 46621288 46621310 -137667352 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 46622077 46622105 -137666557 + AT_rich Low_complexity Low_complexity 1 28 0 269 218 13 0 chr4 46622753 46622831 -137665831 + (TATATG)n Simple_repeat Simple_repeat 4 82 0 25 0 0 0 chr4 46622972 46622997 -137665665 + AT_rich Low_complexity Low_complexity 1 25 0 652 276 92 35 chr4 46623071 46623299 -137665363 - MIR SINE MIR -10 252 12 1328 214 77 17 chr4 46623361 46623711 -137664951 - MLT2C2 LTR ERVL -75 389 19 3208 226 25 42 chr4 46623734 46624936 -137663726 + L1MB5 LINE L1 4971 6162 -12 2265 87 7 10 chr4 46625983 46626282 -137662380 - AluSq SINE Alu -13 300 3 1130 190 49 36 chr4 46626378 46626625 -137662037 - MLT1A1 LTR MaLR 0 365 116 612 295 133 3 chr4 46626905 46627207 -137661455 - MER58B DNA MER1_type 0 341 1 24 32 0 0 chr4 46627835 46627866 -137660796 + AT_rich Low_complexity Low_complexity 1 31 0 32 0 0 0 chr4 46628444 46628476 -137660186 + AT_rich Low_complexity Low_complexity 1 32 0 27 0 0 0 chr4 46628589 46628616 -137660046 + AT_rich Low_complexity Low_complexity 1 27 0 261 0 0 0 chr4 46629232 46629261 -137659401 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1334 251 51 11 chr4 46630140 46630514 -137658148 + LTR52 LTR ERVL 1 389 -32 749 250 0 18 chr4 46630531 46630695 -137657967 + FRAM SINE Alu 2 162 -4 216 86 0 0 chr4 46630723 46630758 -137657904 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 229 113 0 19 chr4 46630883 46630936 -137657726 - MER57A LTR ERV1 -2 401 350 2185 120 64 51 chr4 46630936 46631329 -137657333 + MER48 LTR ERV1 1 398 0 19649 150 16 17 chr4 46631329 46635166 -137653496 + HERVH48 LTR ERV1 1 3537 -2992 17396 114 16 3 chr4 46635159 46637711 -137650951 + HERVH48 LTR ERV1 4069 6654 0 * 1940 112 112 73 chr4 46637711 46638094 -137650568 + MER48 LTR ERV1 1 398 0 991 240 116 31 chr4 46638094 46638448 -137650214 - MER57B LTR ERV1 -49 385 2 777 239 33 48 chr4 46638892 46639164 -137649498 - L1MB8 LINE L1 -1 6177 5910 353 317 103 0 chr4 46639233 46639378 -137649284 + L2 LINE L2 1313 1472 -1842 294 143 0 0 chr4 46639522 46639571 -137649091 + (TA)n Simple_repeat Simple_repeat 1 49 0 204 374 68 27 chr4 46639758 46639977 -137648685 - L2 LINE L2 -86 3227 3000 248 376 70 28 chr4 46640301 46640514 -137648148 + L2 LINE L2 3006 3227 -86 315 71 0 0 chr4 46640637 46640679 -137647983 + (TG)n Simple_repeat Simple_repeat 1 42 0 1799 116 16 46 chr4 46641012 46641315 -137647347 - AluSg SINE Alu -16 294 1 22 0 0 0 chr4 46641325 46641347 -137647315 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 46641520 46641542 -137647120 + AT_rich Low_complexity Low_complexity 1 22 0 1188 211 100 4 chr4 46641791 46642051 -137646611 - AluJo SINE Alu -25 287 3 203 381 19 9 chr4 46643982 46644087 -137644575 - MIR SINE MIR -155 107 2 553 246 65 40 chr4 46644212 46644411 -137644251 + L2 LINE L2 354 557 -2757 2332 321 146 22 chr4 46644428 46645761 -137642901 + L2 LINE L2 862 2359 -955 186 167 0 0 chr4 46645915 46645951 -137642711 + (TA)n Simple_repeat Simple_repeat 1 36 0 1484 251 91 0 chr4 46645993 46646379 -137642283 + MLT1D LTR MaLR 84 504 -1 409 316 16 62 chr4 46646445 46646638 -137642024 - MIR SINE MIR -7 255 72 283 381 38 6 chr4 46646638 46646798 -137641864 + L2 LINE L2 2889 3053 -260 181 290 32 16 chr4 46647275 46647337 -137641325 - L2 LINE L2 -556 2758 2696 192 378 88 54 chr4 46647885 46648033 -137640629 - L2 LINE L2 -18 3254 3102 320 264 73 36 chr4 46648497 46648607 -137640055 - L2 LINE L2 -12 3301 3188 24 32 0 0 chr4 46648827 46648858 -137639804 + AT_rich Low_complexity Low_complexity 1 31 0 27 0 0 0 chr4 46649588 46649615 -137639047 + AT_rich Low_complexity Low_complexity 1 27 0 193 292 0 0 chr4 46649968 46650016 -137638646 + L2 LINE L2 3147 3194 -78 701 338 70 3 chr4 46650075 46650377 -137638285 - MLT1I LTR MaLR -3 406 85 665 260 24 6 chr4 46650851 46651020 -137637642 + MIR SINE MIR 66 237 -25 2134 122 3 0 chr4 46651029 46651332 -137637330 - AluSg SINE Alu -6 304 1 5367 159 11 5 chr4 46652174 46653125 -137635537 - L1MA4 LINE L1 0 6300 5345 1222 230 0 7 chr4 46653129 46653425 -137635237 + L1 LINE L1 4977 5270 -876 9745 181 30 63 chr4 46653432 46655264 -137633398 + L1MA3 LINE L1 17 1773 -5792 207 0 0 0 chr4 46655264 46655287 -137633375 + (GA)n Simple_repeat Simple_repeat 2 24 0 9745 181 30 63 chr4 46655287 46655543 -137633119 + L1MA3 LINE L1 1773 2036 -5529 * 14237 179 28 9 chr4 46655541 46659957 -137628705 + L1MA3 LINE L1 3217 7724 0 473 98 27 80 chr4 46659987 46660099 -137628563 + L1M LINE L1 5265 5370 -930 * 556 292 106 61 chr4 46660098 46661047 -137627615 - L1M4 LINE L1 -1652 4494 3503 238 270 27 97 chr4 46661055 46661240 -137627422 - L1MEd LINE L1 -2502 3627 3456 988 244 71 86 chr4 46661248 46661615 -137627047 + MLT1C LTR MaLR 6 366 -101 2054 142 33 3 chr4 46661615 46661982 -137626680 + L1PB4 LINE L1 5777 6154 -2 988 244 71 86 chr4 46661982 46662077 -137626585 + MLT1C LTR MaLR 366 461 -6 405 342 77 25 chr4 46662102 46662546 -137626116 - L1MEd LINE L1 -2742 3387 2921 241 265 162 25 chr4 46663493 46663697 -137624965 - L1MEd LINE L1 -3442 2687 2456 337 379 53 26 chr4 46663795 46664175 -137624487 - HAL1b LINE L1 -889 459 70 2794 120 69 95 chr4 46664289 46664897 -137623765 + LTR14B LTR ERVK 17 608 0 1691 183 0 3 chr4 46665493 46665829 -137622833 + AluSx SINE Alu 2 336 0 336 83 0 0 chr4 46665925 46665973 -137622689 + (TTCC)n Simple_repeat Simple_repeat 3 50 0 327 254 87 38 chr4 46666175 46666257 -137622405 - L1MEd LINE L1 -4911 1220 1143 2017 107 0 30 chr4 46666257 46666556 -137622106 - AluSc SINE Alu -19 290 1 327 254 87 38 chr4 46666556 46666847 -137621815 - L1MEd LINE L1 -4988 1143 942 31 26 0 0 chr4 46667078 46667116 -137621546 + AT_rich Low_complexity Low_complexity 1 38 0 275 325 36 24 chr4 46667791 46667957 -137620705 - L2 LINE L2 0 3313 3146 24 53 0 0 chr4 46669213 46669251 -137619411 + AT_rich Low_complexity Low_complexity 1 38 0 1728 139 57 0 chr4 46669322 46669623 -137619039 - L1PA16 LINE L1 -4 6162 5845 481 273 99 25 chr4 46669626 46669908 -137618754 - HAL1 LINE L1 -169 2338 2036 10105 156 39 14 chr4 46670143 46671912 -137616750 - Tigger1 DNA MER2_type -604 1814 1 226 282 26 0 chr4 46671930 46672008 -137616654 - HAL1 LINE L1 -794 1713 1634 523 369 18 50 chr4 46672054 46672496 -137616166 + L2 LINE L2 2880 3307 -6 260 246 158 44 chr4 46672626 46672923 -137615739 - HAL1 LINE L1 -1286 1221 891 1146 281 212 18 chr4 46672925 46673548 -137615114 - HAL1 LINE L1 -1662 845 102 813 159 55 0 chr4 46674781 46674926 -137613736 + BC200 scRNA scRNA 1 153 -47 212 111 22 0 chr4 46674938 46674983 -137613679 + (TA)n Simple_repeat Simple_repeat 2 47 0 39291 42 2 0 chr4 46675708 46681333 -137607329 + L1PA4 LINE L1 525 6155 0 232 266 101 37 chr4 46681602 46681711 -137606951 + L1ME3A LINE L1 5423 5538 -624 702 290 62 23 chr4 46682252 46682455 -137606207 + L1ME3A LINE L1 5564 5757 -413 183 42 0 0 chr4 46682455 46682479 -137606183 + (TA)n Simple_repeat Simple_repeat 2 25 0 1450 212 31 11 chr4 46682479 46682833 -137605829 + MLT1A1 LTR MaLR 2 362 -3 702 290 62 23 chr4 46682833 46682980 -137605682 + L1ME3A LINE L1 5756 5929 -241 28 61 0 0 chr4 46683237 46683286 -137605376 + AT_rich Low_complexity Low_complexity 1 49 0 333 226 51 73 chr4 46683368 46683505 -137605157 - MLT1F1-int LTR MaLR -1237 134 1 381 174 47 0 chr4 46683512 46683598 -137605064 - MLT1F1 LTR MaLR -8 559 470 532 273 28 23 chr4 46683617 46683882 -137604780 + MLT1A1-int LTR MaLR 108 490 -881 29 47 0 0 chr4 46684488 46684531 -137604131 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr4 46684854 46684877 -137603785 + AT_rich Low_complexity Low_complexity 1 23 0 1405 113 38 14 chr4 46684950 46685162 -137603500 + AluSg/x SINE Alu 85 301 -11 21 0 0 0 chr4 46685560 46685581 -137603081 + AT_rich Low_complexity Low_complexity 1 21 0 189 107 0 0 chr4 46686287 46686315 -137602347 + (TG)n Simple_repeat Simple_repeat 2 29 0 247 208 0 0 chr4 46687469 46687522 -137601140 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 267 361 36 36 chr4 46688382 46688656 -137600006 + HERV16 LTR ERVL 369 642 -4354 353 326 37 7 chr4 46689883 46690018 -137598644 - MLT1I LTR MaLR -208 201 63 2202 102 3 0 chr4 46690176 46690471 -137598191 - AluSg SINE Alu -14 296 1 344 244 0 8 chr4 46690620 46690737 -137597925 + MER46C DNA MER2_type 1 208 -130 1626 163 40 22 chr4 46691417 46691735 -137596927 + AluJo SINE Alu 1 323 0 237 231 39 0 chr4 46691804 46691882 -137596780 + (TA)n Simple_repeat Simple_repeat 2 82 0 21 0 0 0 chr4 46692014 46692035 -137596627 + AT_rich Low_complexity Low_complexity 1 21 0 842 224 158 11 chr4 46692690 46693106 -137595556 - MLT1D LTR MaLR 0 505 1 231 326 23 23 chr4 46693192 46693278 -137595384 + MIR SINE MIR 38 123 -139 596 359 15 9 chr4 46693403 46693740 -137594922 + L1ME3A LINE L1 5529 5867 -303 567 211 15 30 chr4 46694074 46694207 -137594455 - MER3 DNA MER1_type -77 132 2 32 0 0 0 chr4 46694594 46694626 -137594036 + AT_rich Low_complexity Low_complexity 1 32 0 453 289 56 0 chr4 46694692 46694834 -137593828 - MIR SINE MIR -76 186 37 1788 166 7 0 chr4 46695213 46695509 -137593153 + AluSx SINE Alu 1 298 -14 2174 110 53 11 chr4 46695555 46695910 -137592752 - L1PA13 LINE L1 -4 6159 5790 7094 148 19 4 chr4 46695910 46697601 -137591061 + L1PA13 LINE L1 4069 5785 -383 1221 313 97 15 chr4 46698111 46698890 -137589772 - L1ME3A LINE L1 0 6170 5296 5409 180 21 18 chr4 46698894 46700711 -137587951 - L1MA4 LINE L1 -5 6689 4871 463 276 79 68 chr4 46701009 46701471 -137587191 - L1MA4 LINE L1 -4569 1971 1526 303 381 73 12 chr4 46701732 46701979 -137586683 + LTR16A LTR ERVL 114 375 -75 276 77 0 0 chr4 46701990 46702029 -137586633 + (CA)n Simple_repeat Simple_repeat 1 39 0 715 346 33 11 chr4 46702067 46702431 -137586231 + HERV16 LTR ERVL 3 374 -4622 3927 146 63 36 chr4 46702431 46703180 -137585482 - LTR1 LTR ERV1 -1 784 16 1848 319 48 45 chr4 46703486 46703759 -137584903 + HERV16 LTR ERVL 637 908 -4088 2150 155 59 15 chr4 46703759 46704166 -137584496 + MSTB LTR MaLR 1 425 -1 1848 319 48 45 chr4 46704166 46704322 -137584340 + HERV16 LTR ERVL 908 1062 -3934 2326 95 0 7 chr4 46704322 46704628 -137584034 - AluSx SINE Alu -8 304 1 1848 319 48 45 chr4 46704628 46705093 -137583569 + HERV16 LTR ERVL 1062 1535 -3461 410 287 9 17 chr4 46705164 46705279 -137583383 + HERV16 LTR ERVL 1682 1795 -3201 2243 101 0 3 chr4 46705304 46705601 -137583061 - AluY SINE Alu -15 296 1 318 200 0 100 chr4 46705611 46705711 -137582951 + L1ME1 LINE L1 6073 6162 -4 211 320 67 27 chr4 46705802 46705952 -137582710 + L2 LINE L2 2791 2946 -368 26 0 0 0 chr4 46706444 46706470 -137582192 + AT_rich Low_complexity Low_complexity 1 26 0 614 227 8 23 chr4 46707140 46707272 -137581390 - FLAM_A SINE Alu -2 131 2 369 43 0 0 chr4 46707313 46707360 -137581302 + (TG)n Simple_repeat Simple_repeat 1 47 0 24 53 0 0 chr4 46708554 46708592 -137580070 + AT_rich Low_complexity Low_complexity 1 38 0 2911 123 21 41 chr4 46708978 46709123 -137579539 + L1PA7 LINE L1 4469 4615 -1531 2219 107 0 7 chr4 46709123 46709431 -137579231 + AluY SINE Alu 1 306 -5 2911 123 21 41 chr4 46709431 46709798 -137578864 + L1PA7 LINE L1 4615 4971 -1175 2554 99 6 0 chr4 46709798 46710159 -137578503 + L1PA7 LINE L1 5788 6154 0 710 280 75 49 chr4 46710334 46710680 -137577982 - L2 LINE L2 0 3313 2959 260 383 51 46 chr4 46710970 46711152 -137577510 - LTR16A LTR ERVL 0 450 270 1773 126 8 0 chr4 46711152 46711414 -137577248 + AluSq SINE Alu 42 305 -8 260 383 51 46 chr4 46711414 46711620 -137577042 - LTR16A LTR ERVL -180 270 60 318 318 55 63 chr4 46711861 46712223 -137576439 - HERV16 LTR ERVL -1408 3588 3230 1633 216 87 65 chr4 46712321 46712829 -137575833 - MLT1F LTR MaLR -14 528 10 675 347 52 41 chr4 46712914 46713470 -137575192 - HERV16 LTR ERVL -2307 3457 2896 327 264 34 102 chr4 46713487 46713752 -137574910 + MLT1F1-int LTR MaLR 1124 1370 -1 1361 262 4 8 chr4 46713753 46714229 -137574433 + MLT1F1 LTR MaLR 1 566 -1 1160 133 30 5 chr4 46715079 46715282 -137573380 + HERVH LTR ERV1 5809 6016 -1697 * 3512 112 12 20 chr4 46715275 46715836 -137572826 + HERVH LTR ERV1 7157 7713 0 1481 124 105 14 chr4 46715836 46716165 -137572497 + LTR7 LTR ERV1 1 412 -38 297 0 0 0 chr4 46716749 46716782 -137571880 + (TG)n Simple_repeat Simple_repeat 2 34 0 1300 234 49 38 chr4 46717861 46718447 -137570215 + MER76 LTR ERV 1 656 -32 352 311 95 46 chr4 46718675 46718800 -137569862 - MIR SINE MIR 0 262 145 8800 102 28 14 chr4 46718800 46720069 -137568593 + HSMAR1 DNA Mariner 1 1287 0 352 311 95 46 chr4 46720069 46720184 -137568478 - MIR SINE MIR -117 145 10 22 56 0 0 chr4 46720690 46720726 -137567936 + AT_rich Low_complexity Low_complexity 1 36 0 226 339 33 33 chr4 46720800 46720921 -137567741 + MIR SINE MIR 25 145 -63 1729 199 65 41 chr4 46721368 46721784 -137566878 + MSTB LTR MaLR 1 426 0 188 139 0 23 chr4 46722029 46722072 -137566590 + (TA)n Simple_repeat Simple_repeat 2 43 0 23 0 0 0 chr4 46722745 46722768 -137565894 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 46722828 46722849 -137565813 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 46722890 46722912 -137565750 + AT_rich Low_complexity Low_complexity 1 22 0 326 248 103 26 chr4 46722933 46723050 -137565612 + MIR SINE MIR 95 220 -42 2637 16 7 3 chr4 46723577 46723884 -137564778 - AluY SINE Alu -3 308 1 56 0 0 0 chr4 46724121 46724177 -137564485 + AT_rich Low_complexity Low_complexity 1 56 0 244 250 71 0 chr4 46724195 46724251 -137564411 + MIR SINE MIR 95 154 -108 1948 120 18 4 chr4 46725057 46725379 -137563283 + AluSc SINE Alu 1 326 0 38 61 0 0 chr4 46726208 46726274 -137562388 + AT_rich Low_complexity Low_complexity 1 66 0 2649 251 70 25 chr4 46726295 46727046 -137561616 - L1ME2 LINE L1 -9 6549 5834 2368 88 0 0 chr4 46727046 46727353 -137561309 - AluY SINE Alu -4 307 1 2649 251 70 25 chr4 46727353 46728167 -137560495 - L1ME2 LINE L1 -724 5834 4908 685 276 116 53 chr4 46728167 46729049 -137559613 - L1ME2 LINE L1 -2083 4457 3521 250 320 92 12 chr4 46729077 46729327 -137559335 - L1ME2 LINE L1 -3629 2911 2642 1474 175 76 4 chr4 46729345 46729650 -137559012 + AluSx SINE Alu 3 326 0 1444 165 35 86 chr4 46729656 46729995 -137558667 + MER31B LTR ERV1 2 323 -143 1923 181 9 0 chr4 46730007 46730343 -137558319 + MER47A DNA MER2_type 27 365 -1 275 283 65 22 chr4 46730344 46730482 -137558180 + MER31B LTR ERV1 323 466 0 369 263 169 19 chr4 46730487 46730647 -137558015 - L1ME2 LINE L1 -4037 2684 2501 2366 181 6 25 chr4 46730674 46731160 -137557502 - L1PB4 LINE L1 -3 6153 5677 1915 191 4 9 chr4 46731167 46731717 -137556945 - L1PB4 LINE L1 -686 5470 4921 315 320 134 0 chr4 46732123 46732295 -137556367 - L1ME2 LINE L1 -4484 2056 1862 312 240 23 54 chr4 46732340 46732469 -137556193 - L1ME2 LINE L1 -4941 1599 1475 229 87 43 0 chr4 46733048 46733094 -137555568 + LTR66 LTR ERVL 392 439 -171 226 163 0 0 chr4 46733100 46733143 -137555519 + L1MC4 LINE L1 6660 6702 -1340 259 167 125 0 chr4 46733867 46733963 -137554699 + (TTAA)n Simple_repeat Simple_repeat 3 110 0 21 0 0 0 chr4 46734292 46734313 -137554349 + AT_rich Low_complexity Low_complexity 1 21 0 218 315 8 62 chr4 46735760 46735890 -137552772 - MIR SINE MIR -81 181 59 1587 254 96 33 chr4 46736118 46736661 -137552001 - MER74B LTR ERVL -2 620 44 1817 242 26 7 chr4 46736764 46737219 -137551443 - MLT1C LTR MaLR -1 466 3 209 424 31 31 chr4 46738128 46738319 -137550343 + MIR3 SINE MIR 14 204 -4 455 290 7 0 chr4 46738797 46738959 -137549703 - L1ME1 LINE L1 -5 6161 5996 543 199 41 7 chr4 46739061 46739207 -137549455 + L1MA10 LINE L1 6177 6327 -7 2064 226 58 20 chr4 46739252 46739753 -137548909 + MLT2B1 LTR ERVL 1 520 0 347 288 72 26 chr4 46740085 46740238 -137548424 + HERV16 LTR ERVL 1626 1785 -3211 578 283 93 21 chr4 46740289 46740579 -137548083 + HERV16 LTR ERVL 1871 2181 -2815 410 346 34 37 chr4 46740581 46740879 -137547783 + HERV16 LTR ERVL 2136 2432 -2564 633 363 32 11 chr4 46740927 46741427 -137547235 + HERV16 LTR ERVL 2541 3096 -1900 283 335 76 5 chr4 46741929 46742114 -137546548 + HERV16 LTR ERVL 3663 3860 -1904 13949 185 29 34 chr4 46742497 46746400 -137542262 + L1MA3 LINE L1 208 4128 -3596 5705 26 0 0 chr4 46746400 46747062 -137541600 + L1PA3 LINE L1 5489 6150 -5 13949 185 29 34 chr4 46747062 46747760 -137540902 + L1MA3 LINE L1 4128 4828 -2896 189 74 0 0 chr4 46747760 46747787 -137540875 + (CAA)n Simple_repeat Simple_repeat 2 28 0 13949 185 29 34 chr4 46747787 46750377 -137538285 + L1MA3 LINE L1 4828 7721 -3 1278 264 57 28 chr4 46750671 46751213 -137537449 + L1ME2 LINE L1 5605 6162 -2 409 223 121 13 chr4 46751217 46751374 -137537288 + L1ME3A LINE L1 5984 6157 -13 25 31 0 0 chr4 46751374 46751406 -137537256 + AT_rich Low_complexity Low_complexity 1 32 0 225 65 0 0 chr4 46752085 46752116 -137536546 + (CAT)n Simple_repeat Simple_repeat 3 33 0 629 229 99 50 chr4 46752271 46752472 -137536190 - MER20 DNA MER1_type -8 211 1 224 340 40 13 chr4 46752529 46752646 -137536016 + MIR SINE MIR 29 154 -108 3806 164 45 18 chr4 46752997 46753628 -137535034 + Tigger2 DNA MER2_type 1 656 -2062 2420 59 7 0 chr4 46753628 46753933 -137534729 + AluY SINE Alu 1 307 -4 3806 164 45 18 chr4 46753933 46754038 -137534624 + Tigger2 DNA MER2_type 656 757 -1961 1198 184 40 12 chr4 46754093 46754343 -137534319 + Tigger2 DNA MER2_type 2452 2708 -10 1678 235 25 43 chr4 46754484 46754998 -137533664 + MLT1D LTR MaLR 1 505 0 878 216 12 3 chr4 46755337 46755579 -137533083 + MER2 DNA MER2_type 27 338 -7 2112 113 59 34 chr4 46757655 46758010 -137530652 - THE1B LTR MaLR 0 364 1 24 32 0 0 chr4 46758505 46758536 -137530126 + AT_rich Low_complexity Low_complexity 1 31 0 2002 188 13 61 chr4 46758628 46759106 -137529556 - MER31B LTR ERV1 0 466 12 362 322 114 15 chr4 46759154 46759418 -137529244 + L2 LINE L2 2835 3124 -189 813 161 0 0 chr4 46759419 46759568 -137529094 + CT-rich Low_complexity Low_complexity 1 149 0 1825 134 0 38 chr4 46759568 46759859 -137528803 - AluSx SINE Alu -31 281 2 191 111 0 28 chr4 46759900 46759936 -137528726 + (TA)n Simple_repeat Simple_repeat 2 36 0 242 304 22 0 chr4 46759938 46760030 -137528632 + L2 LINE L2 3146 3239 -74 27 73 0 0 chr4 46760946 46761001 -137527661 + AT_rich Low_complexity Low_complexity 1 55 0 34 34 0 17 chr4 46761185 46761206 -137527456 + AT_rich Low_complexity Low_complexity 1 21 -37 1707 166 29 0 chr4 46761206 46761484 -137527178 - AluSx SINE Alu -26 286 1 34 34 0 17 chr4 46761484 46761521 -137527141 + AT_rich Low_complexity Low_complexity 21 58 0 23 92 0 0 chr4 46761631 46761696 -137526966 + AT_rich Low_complexity Low_complexity 1 65 0 236 234 125 16 chr4 46762824 46762888 -137525774 - L2 LINE L2 -16 3256 3186 278 276 171 33 chr4 46762936 46763088 -137525574 - MIR SINE MIR 0 262 90 3913 112 71 31 chr4 46763424 46763978 -137524684 - L1PA16 LINE L1 0 6166 5579 1924 139 14 0 chr4 46763978 46764273 -137524389 + AluSq SINE Alu 1 299 -14 3913 112 71 31 chr4 46764273 46764398 -137524264 - L1PA16 LINE L1 -587 5579 5460 24 32 0 0 chr4 46764510 46764541 -137524121 + AT_rich Low_complexity Low_complexity 1 31 0 285 182 0 0 chr4 46764563 46764618 -137524044 + (TATATG)n Simple_repeat Simple_repeat 2 56 0 471 347 23 0 chr4 46764791 46764964 -137523698 - MIR SINE MIR -2 260 84 22 0 0 0 chr4 46765170 46765192 -137523470 + AT_rich Low_complexity Low_complexity 1 22 0 228 296 12 0 chr4 46766029 46766110 -137522552 + A-rich Low_complexity Low_complexity 2 83 0 1068 287 78 46 chr4 46766974 46768498 -137520164 + L1ME3A LINE L1 4385 5955 -215 1286 317 80 22 chr4 46768578 46769440 -137519222 - L1MEc LINE L1 -5451 945 34 26 0 0 0 chr4 46769751 46769777 -137518885 + AT_rich Low_complexity Low_complexity 1 26 0 237 320 46 39 chr4 46769814 46769967 -137518695 + MIR SINE MIR 20 173 -89 616 130 9 9 chr4 46771147 46771255 -137517407 - L1PA13 LINE L1 -7 6156 6049 311 255 72 56 chr4 46771543 46771919 -137516743 - L1M4b LINE L1 -3029 3928 3547 369 269 81 75 chr4 46771927 46772328 -137516334 - L1M4b LINE L1 -4898 2240 1843 2232 96 0 0 chr4 46772328 46772621 -137516041 - AluY SINE Alu -18 293 1 369 269 81 75 chr4 46772621 46772903 -137515759 - L1M4b LINE L1 -5295 1843 1379 4542 108 0 42 chr4 46772989 46773728 -137514934 + L1PB1 LINE L1 5438 6145 -6 219 69 0 0 chr4 46773740 46773769 -137514893 + (TG)n Simple_repeat Simple_repeat 2 30 0 354 273 0 0 chr4 46774140 46774217 -137514445 + AluJ/FRAM SINE Alu 222 298 -4 3353 134 23 4 chr4 46774605 46775119 -137513543 + MER1A DNA MER1_type 4 527 0 208 158 35 0 chr4 46776137 46776194 -137512468 + (TA)n Simple_repeat Simple_repeat 2 60 0 263 399 7 14 chr4 46776325 46776468 -137512194 + L2 LINE L2 57 198 -3116 11684 165 40 5 chr4 46776588 46779648 -137509014 + L1PB1 LINE L1 888 4057 -2805 3748 132 132 84 chr4 46779658 46780932 -137507730 - pTR5 LTR ERV1 0 2438 171 8057 188 31 10 chr4 46780932 46781979 -137506683 + L1PB1 LINE L1 4063 5086 -1781 186 43 0 0 chr4 46781979 46782002 -137506660 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 8057 188 31 10 chr4 46782002 46783349 -137505313 + L1PB1 LINE L1 5086 6403 -464 270 0 0 0 chr4 46783349 46783379 -137505283 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 414 0 0 0 chr4 46783378 46783424 -137505238 + (CA)n Simple_repeat Simple_repeat 2 47 0 8057 188 31 10 chr4 46783379 46783775 -137504887 + L1PB1 LINE L1 6403 6864 -3 912 210 51 0 chr4 46783781 46783957 -137504705 - MER70A LTR ERVL -84 388 204 10905 202 19 8 chr4 46783961 46786003 -137502659 - ERVL-B3 LTR ERVL -1889 3875 1812 5179 244 40 23 chr4 46786677 46788351 -137500311 - ERVL-B3 LTR ERVL -3870 1784 82 1130 161 134 9 chr4 46788351 46788568 -137500094 - MSTB LTR MaLR -15 411 168 302 309 0 10 chr4 46788584 46788681 -137499981 - L1MC4 LINE L1 -1337 6705 6610 1095 226 42 38 chr4 46788691 46789003 -137499659 - MLT2B3 LTR ERVL -40 498 216 276 247 49 0 chr4 46789113 46789194 -137499468 + L1MA6 LINE L1 3036 3120 -3026 2962 189 26 4 chr4 46789206 46790339 -137498323 + L1MA6 LINE L1 4691 5848 -452 322 310 99 21 chr4 46792488 46792730 -137495932 + L1M4 LINE L1 5287 5547 -627 236 222 14 0 chr4 46793153 46793225 -137495437 + CT-rich Low_complexity Low_complexity 1 73 0 23 0 0 0 chr4 46793501 46793524 -137495138 + AT_rich Low_complexity Low_complexity 1 23 0 334 92 15 15 chr4 46793579 46793644 -137495018 + (CA)n Simple_repeat Simple_repeat 2 66 0 317 264 0 0 chr4 46794075 46794181 -137494481 + (TA)n Simple_repeat Simple_repeat 1 106 0 21 71 0 0 chr4 46794356 46794398 -137494264 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr4 46798637 46798662 -137490000 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr4 46804019 46804054 -137484608 + AT_rich Low_complexity Low_complexity 1 35 0 388 278 0 0 chr4 46804266 46804338 -137484324 + Tigger3(Golem) DNA MER2_type 9 80 -2949 515 208 10 0 chr4 46804466 46804562 -137484100 + Tigger3(Golem) DNA MER2_type 2919 3015 -14 339 25 0 0 chr4 46804604 46804644 -137484018 + (TG)n Simple_repeat Simple_repeat 1 40 0 1970 189 8 34 chr4 46804663 46805098 -137483564 + THE1-int LTR MaLR 635 1135 -516 2618 111 3 0 chr4 46809827 46810204 -137478458 + L1PA13 LINE L1 5783 6160 -3 261 278 113 46 chr4 46810242 46810393 -137478269 + LTR37B LTR ERV1 4 164 -304 371 267 57 29 chr4 46810507 46810717 -137477945 + LTR37B LTR ERV1 201 416 -52 26 82 0 0 chr4 46813907 46813968 -137474694 + AT_rich Low_complexity Low_complexity 1 61 0 21 0 0 0 chr4 46813981 46814002 -137474660 + AT_rich Low_complexity Low_complexity 1 21 0 229 185 12 12 chr4 46814003 46814084 -137474578 + (TTTAA)n Simple_repeat Simple_repeat 5 85 0 288 0 0 0 chr4 46826383 46826415 -137462247 + (CA)n Simple_repeat Simple_repeat 2 33 0 39 60 0 0 chr4 46826850 46826917 -137461745 + AT_rich Low_complexity Low_complexity 1 67 0 367 238 0 28 chr4 46827128 46827271 -137461391 + (CATATA)n Simple_repeat Simple_repeat 3 141 0 1430 223 0 10 chr4 46827604 46827905 -137460757 + AluJo SINE Alu 3 300 -12 276 30 0 0 chr4 46827908 46827941 -137460721 + (GGAA)n Simple_repeat Simple_repeat 4 36 0 2948 152 27 10 chr4 46828043 46830117 -137458545 - L1PBa LINE L1 -3408 3454 1297 198 0 0 0 chr4 46832167 46832189 -137456473 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 747 307 64 3 chr4 46832745 46833028 -137455634 + MLT1H LTR MaLR 5 304 -245 604 150 0 17 chr4 46833171 46833291 -137455371 + (GGAA)n Simple_repeat Simple_repeat 1 118 0 2311 203 34 28 chr4 46833335 46834009 -137454653 - LTR27 LTR ERV1 -1 635 3 2122 130 61 9 chr4 46834315 46834661 -137454001 - THE1B LTR MaLR 0 364 1 11115 100 20 1 chr4 46834661 46836210 -137452452 - THE1B-int LTR MaLR 0 1580 2 2231 133 34 11 chr4 46836211 46836565 -137452097 - THE1B LTR MaLR 0 364 3 24 0 0 0 chr4 46837516 46837540 -137451122 + AT_rich Low_complexity Low_complexity 1 24 0 204 111 0 0 chr4 46837615 46837651 -137451011 + (TA)n Simple_repeat Simple_repeat 2 37 0 350 143 26 65 chr4 46837690 46837767 -137450895 + Tigger2 DNA MER2_type 1 74 -2644 * 1766 172 32 98 chr4 46837754 46838040 -137450622 + Tigger2 DNA MER2_type 2275 2519 -199 2029 150 0 0 chr4 46838040 46838340 -137450322 + AluSq SINE Alu 1 300 -13 1766 172 32 98 chr4 46838340 46838525 -137450137 + Tigger2 DNA MER2_type 2519 2715 -3 252 59 0 0 chr4 46838527 46838561 -137450101 + (TG)n Simple_repeat Simple_repeat 2 35 0 255 234 53 31 chr4 46839158 46839357 -137449305 + L1MEc LINE L1 906 1088 -5031 1958 104 61 0 chr4 46839381 46839660 -137449002 + AluSx SINE Alu 10 305 -7 484 319 60 52 chr4 46839810 46840177 -137448485 + L1MEc LINE L1 1096 1665 -4645 39 38 0 0 chr4 46840513 46840566 -137448096 + AT_rich Low_complexity Low_complexity 1 53 0 426 353 84 21 chr4 46840943 46841181 -137447481 + MIR SINE MIR 10 262 0 21 0 0 0 chr4 46841392 46841413 -137447249 + AT_rich Low_complexity Low_complexity 1 21 0 1349 267 167 35 chr4 46841601 46842351 -137446311 + L2 LINE L2 2215 3068 -245 182 333 39 0 chr4 46842478 46842529 -137446133 + L2 LINE L2 3216 3268 -4 207 0 0 0 chr4 46842545 46842568 -137446094 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 969 110 0 0 chr4 46842567 46842712 -137445950 + (TA)n Simple_repeat Simple_repeat 1 145 0 2343 165 69 22 chr4 46843129 46843620 -137445042 - L1MA5 LINE L1 -6 6294 5781 * 9038 186 23 4 chr4 46843608 46846276 -137442386 - L1PA15 LINE L1 -33 6132 3431 1963 242 15 17 chr4 46846293 46846814 -137441848 - L1M3de LINE L1 -4516 2137 1618 2734 318 67 17 chr4 46846822 46848033 -137440629 - L1M3de LINE L1 -5301 1352 4 21 36 0 0 chr4 46848179 46848207 -137440455 + AT_rich Low_complexity Low_complexity 1 28 0 295 192 0 0 chr4 46848244 46848296 -137440366 + Alu SINE Alu 1 52 -248 557 373 55 21 chr4 46848298 46848867 -137439795 - L1MEc LINE L1 -5717 679 92 322 234 21 11 chr4 46848946 46849040 -137439622 + L1M4 LINE L1 3595 3689 -2457 767 325 44 5 chr4 46849073 46849501 -137439161 + L1M4 LINE L1 4130 4574 -1572 2713 105 3 5 chr4 46849582 46849972 -137438690 - L1PA10 LINE L1 -3 6165 5777 2417 204 19 34 chr4 46851076 46851611 -137437051 + MER68 LTR ERV1 36 562 0 210 71 0 0 chr4 46851617 46851645 -137437017 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 235 182 26 0 chr4 46851644 46851721 -137436941 + (TA)n Simple_repeat Simple_repeat 2 80 0 34 24 0 0 chr4 46851859 46851900 -137436762 + AT_rich Low_complexity Low_complexity 1 41 0 232 188 47 0 chr4 46851968 46852032 -137436630 + T-rich Low_complexity Low_complexity 5 71 0 398 292 68 28 chr4 46852238 46852488 -137436174 + L1MC/D LINE L1 993 1252 -4867 242 329 55 9 chr4 46852634 46852853 -137435809 + L1MC/D LINE L1 1445 1673 -4637 240 161 0 65 chr4 46853245 46853307 -137435355 - L1MDa LINE L1 -3904 2636 2579 6430 84 2 0 chr4 46853425 46854633 -137434029 - L1PA7 LINE L1 -16 6138 4935 24 85 0 0 chr4 46855031 46855090 -137433572 + AT_rich Low_complexity Low_complexity 1 59 0 1050 258 31 11 chr4 46855865 46856286 -137432376 - MSTD LTR MaLR 0 396 24 724 466 12 15 chr4 46858575 46858916 -137429746 - L1M4 LINE L1 -561 5623 5284 1549 173 100 0 chr4 46860608 46860938 -137427724 - MLT1A1 LTR MaLR 0 365 3 405 344 35 40 chr4 46861371 46861515 -137427147 - MIR SINE MIR -2 260 116 2080 148 0 0 chr4 46861515 46861820 -137426842 + AluSx SINE Alu 1 305 -7 405 344 35 40 chr4 46861820 46861902 -137426760 - MIR SINE MIR -146 116 35 2180 108 3 3 chr4 46862407 46862714 -137425948 + AluSg SINE Alu 1 307 -3 1080 231 97 59 chr4 46862968 46863512 -137425150 - MER34B LTR ERV1 0 565 11 561 103 37 0 chr4 46864360 46864467 -137424195 + (TCTA)n Simple_repeat Simple_repeat 4 114 0 1947 260 23 19 chr4 46864826 46865476 -137423186 + L1MC/D LINE L1 3736 4388 -1741 1394 219 21 0 chr4 46865499 46865782 -137422880 + AluJb SINE Alu 17 305 -7 966 258 37 61 chr4 46865784 46866245 -137422417 + L1MC/D LINE L1 4393 4842 -1287 5996 204 36 63 chr4 46866259 46867917 -137420745 - L1MC3 LINE L1 -11 7774 6163 3659 236 43 64 chr4 46867914 46869696 -137418966 - L1MCb LINE L1 -4509 2055 222 * 1903 160 0 0 chr4 46869696 46870013 -137418649 + AluSx SINE Alu 1 317 0 3659 236 43 64 chr4 46870013 46870230 -137418432 - L1MCb LINE L1 -6342 222 2 1642 225 29 118 chr4 46870254 46871056 -137417606 + L1MC/D LINE L1 4832 5552 -822 192 97 0 0 chr4 46871056 46871087 -137417575 + (CA)n Simple_repeat Simple_repeat 2 32 0 1642 225 29 118 chr4 46871087 46871321 -137417341 + L1MC/D LINE L1 5552 5805 -569 245 182 0 0 chr4 46871356 46871400 -137417262 + L1MC/D LINE L1 5780 5823 -536 1994 177 46 7 chr4 46871514 46871949 -137416713 + L1MD1 LINE L1 5783 6234 -8 542 173 31 24 chr4 46871971 46872098 -137416564 + Looper DNA T2_type 1431 1558 0 291 306 38 51 chr4 46872838 46872995 -137415667 - MIR3 SINE MIR -8 200 46 266 87 0 0 chr4 46874265 46874311 -137414351 + LTR66 LTR ERVL 394 439 -171 343 221 13 26 chr4 46874354 46874431 -137414231 + MIR SINE MIR 76 151 -111 2330 63 3 7 chr4 46874960 46875262 -137413400 + AluYb8 SINE Alu 18 318 0 979 175 12 0 chr4 46875265 46875431 -137413231 + AluSg/x SINE Alu 127 294 -16 224 262 16 16 chr4 46875634 46875695 -137412967 + (TATATG)n Simple_repeat Simple_repeat 5 65 0 1954 120 21 52 chr4 46875695 46876077 -137412585 + L1PB2 LINE L1 5782 6151 0 7880 12 0 0 chr4 46876701 46877875 -137410787 + L1PA2 LINE L1 4981 6152 -3 202 302 20 7 chr4 46878968 46879117 -137409545 + (TA)n Simple_repeat Simple_repeat 2 152 0 373 391 78 9 chr4 46879149 46879484 -137409178 + L2 LINE L2 2396 2753 -561 867 317 18 9 chr4 46879653 46879981 -137408681 - LTR16A LTR ERVL -8 442 112 207 407 7 27 chr4 46880060 46880210 -137408452 + L2 LINE L2 2935 3081 -191 219 336 73 36 chr4 46880287 46880397 -137408265 + L2 LINE L2 3200 3313 0 31 68 0 0 chr4 46882226 46882285 -137406377 + AT_rich Low_complexity Low_complexity 1 59 0 13272 223 42 17 chr4 46882623 46885841 -137402821 - L1PB1 LINE L1 0 6867 3733 422 37 0 0 chr4 46885841 46885895 -137402767 - L1PA3 LINE L1 -3 6152 6099 13272 223 42 17 chr4 46885895 46889146 -137399516 - L1PB1 LINE L1 -3134 3733 6 1374 181 107 15 chr4 46889157 46889428 -137399234 - AluJb SINE Alu -16 296 1 228 266 106 18 chr4 46889477 46889590 -137399072 - MIR SINE MIR -29 233 111 1108 249 94 26 chr4 46890295 46890637 -137398025 + MLT1A1 LTR MaLR 1 365 0 242 381 21 0 chr4 46890982 46891079 -137397583 - L2 LINE L2 -188 3084 2986 2663 92 0 0 chr4 46891670 46892038 -137396624 - L1P LINE L1 -861 5285 4918 4376 94 0 0 chr4 46892038 46892640 -137396022 + L1PA7 LINE L1 5552 6154 0 26 0 0 0 chr4 46892640 46892666 -137395996 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr4 46892735 46892770 -137395892 + AT_rich Low_complexity Low_complexity 1 35 0 255 278 109 43 chr4 46893596 46893767 -137394895 + MIR3 SINE MIR 8 196 -12 1766 203 65 30 chr4 46894027 46894490 -137394172 + MLT1D LTR MaLR 27 505 0 215 315 136 25 chr4 46895733 46895895 -137392767 - MIR SINE MIR -14 248 69 732 231 0 25 chr4 46896991 46897151 -137391511 - FRAM SINE Alu -20 156 1 2347 114 22 6 chr4 46897636 46897994 -137390668 + THE1B LTR MaLR 1 364 0 1975 136 0 3 chr4 46898286 46898580 -137390082 + AluSc SINE Alu 1 293 -16 267 315 19 9 chr4 46899128 46899236 -137389426 + MIR3 SINE MIR 99 207 -1 1701 209 50 92 chr4 46901784 46902362 -137386300 + MLT2B3 LTR ERVL 1 554 0 1282 195 0 88 chr4 46902375 46902703 -137385959 - AluJo SINE Alu -1 301 3 9138 182 32 9 chr4 46902969 46903328 -137385334 - L1PB1 LINE L1 0 6151 5802 342 0 0 0 chr4 46903328 46903366 -137385296 + (TA)n Simple_repeat Simple_repeat 2 39 0 9138 182 32 9 chr4 46903366 46904653 -137384009 - L1PB1 LINE L1 -349 5802 4546 1845 151 0 36 chr4 46904653 46904958 -137383704 - AluSg SINE Alu -14 296 3 9138 182 32 9 chr4 46904958 46906316 -137382346 - L1PB1 LINE L1 -1605 4546 3073 22 0 0 0 chr4 46906482 46906504 -137382158 + AT_rich Low_complexity Low_complexity 1 22 0 2146 126 46 5 chr4 46906823 46907196 -137381466 - L1MA5A LINE L1 -3 6294 5907 1334 297 130 19 chr4 46907196 46907812 -137380850 + L2 LINE L2 1758 2441 -873 208 363 59 49 chr4 46908089 46908191 -137380471 - L2 LINE L2 -8 3264 3162 28 48 0 0 chr4 46909290 46909332 -137379330 + AT_rich Low_complexity Low_complexity 1 42 0 530 208 0 62 chr4 46911688 46911818 -137376844 - MLT1E LTR MaLR 0 593 472 837 244 139 96 chr4 46912089 46912598 -137376064 - MLT1E1 LTR MaLR -122 532 2 7267 85 11 1 chr4 46914232 46915245 -137373417 + L1P LINE L1 4058 5080 -1066 6564 77 17 0 chr4 46915245 46916418 -137372244 + L1PA6 LINE L1 4966 6152 -2 489 234 116 75 chr4 46916418 46916789 -137371873 - HsTC2 DNA Tc2 -67 1831 1270 834 275 166 18 chr4 46916793 46917233 -137371429 - HsTC2 DNA Tc2 -1391 507 3 3535 165 117 7 chr4 46917377 46918121 -137370541 - LTR1B LTR ERV1 0 826 1 2542 133 33 5 chr4 46918251 46918460 -137370202 + L1P5 LINE L1 5353 5555 -599 2481 62 3 3 chr4 46918460 46918767 -137369895 - AluY SINE Alu -4 307 1 2542 133 33 5 chr4 46918767 46918984 -137369678 + L1P5 LINE L1 5555 5791 -363 398 270 77 52 chr4 46919177 46919540 -137369122 + L1M4 LINE L1 2663 3034 -3112 2626 153 11 42 chr4 46919543 46919894 -137368768 - L1 LINE L1 -1482 4664 4335 2078 116 0 31 chr4 46919894 46920214 -137368448 - AluY SINE Alu -1 310 1 2626 153 11 42 chr4 46920214 46920411 -137368251 - L1 LINE L1 -1811 4335 4133 313 260 110 8 chr4 46920506 46920633 -137368029 + L1M4 LINE L1 3179 3318 -2828 643 306 81 30 chr4 46921329 46921662 -137367000 - LTR33 LTR ERVL 0 521 172 526 242 108 38 chr4 46921861 46922047 -137366615 + MER58A DNA MER1_type 11 209 -15 221 253 0 13 chr4 46923676 46923755 -137364907 + A-rich Low_complexity Low_complexity 5 82 0 25 75 0 0 chr4 46924036 46924089 -137364573 + AT_rich Low_complexity Low_complexity 1 53 0 24 32 0 0 chr4 46924231 46924262 -137364400 + AT_rich Low_complexity Low_complexity 1 31 0 13220 45 3 4 chr4 46924262 46926690 -137361972 - L1PA5 LINE L1 -1 6153 3722 243 332 49 34 chr4 46927015 46927220 -137361442 + L1MC/D LINE L1 5703 5910 -1898 386 43 58 0 chr4 46927306 46927375 -137361287 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 184 320 20 20 chr4 46927759 46927859 -137360803 + MER5A DNA MER1_type 7 106 -83 376 301 43 84 chr4 46928037 46928359 -137360303 - MLT1I LTR MaLR -17 392 84 25 0 0 0 chr4 46928488 46928513 -137360149 + AT_rich Low_complexity Low_complexity 1 25 0 242 203 0 29 chr4 46928620 46928689 -137359973 + CT-rich Low_complexity Low_complexity 1 67 0 510 289 96 15 chr4 46928839 46929036 -137359626 + MIR SINE MIR 37 249 -13 21 57 0 0 chr4 46929435 46929470 -137359192 + AT_rich Low_complexity Low_complexity 1 35 0 2115 128 0 0 chr4 46931655 46931952 -137356710 - AluSx SINE Alu -11 301 5 554 243 81 67 chr4 46932054 46932264 -137356398 + MLT1I LTR MaLR 195 407 -2 228 67 0 0 chr4 46932327 46932357 -137356305 + (TA)n Simple_repeat Simple_repeat 2 31 0 18449 47 0 1 chr4 46932403 46935487 -137353175 + L1PA4 LINE L1 3060 6147 -8 1759 200 107 69 chr4 46935522 46936014 -137352648 + MLT2B3 LTR ERVL 1 514 -40 624 73 9 27 chr4 46936014 46936124 -137352538 + (TCTA)n Simple_repeat Simple_repeat 3 110 0 1759 200 107 69 chr4 46936124 46936135 -137352527 + MLT2B3 LTR ERVL 514 523 -31 1281 178 22 30 chr4 46937527 46937796 -137350866 - AluJo SINE Alu -9 303 37 418 351 181 14 chr4 46938798 46939296 -137349366 - L1MC4a LINE L1 -1901 5907 5327 21 82 0 0 chr4 46939357 46939406 -137349256 + AT_rich Low_complexity Low_complexity 1 49 0 316 276 57 24 chr4 46939473 46939596 -137349066 - L1MC5 LINE L1 -44 7917 7791 21 0 0 0 chr4 46940162 46940183 -137348479 + AT_rich Low_complexity Low_complexity 1 21 0 10918 213 51 13 chr4 46940227 46940343 -137348319 + L1MA4A LINE L1 2314 2424 -3879 336 102 0 0 chr4 46940343 46940392 -137348270 + (TA)n Simple_repeat Simple_repeat 1 49 0 10918 213 51 13 chr4 46940392 46943954 -137344708 + L1MA4A LINE L1 2424 6121 -182 338 250 11 0 chr4 46943958 46944050 -137344612 + L1MA4A LINE L1 6188 6280 -23 35 63 0 0 chr4 46944906 46944969 -137343693 + AT_rich Low_complexity Low_complexity 1 63 0 902 155 11 46 chr4 46946044 46946218 -137342444 + FRAM SINE Alu 1 160 -16 555 78 0 0 chr4 46946218 46946295 -137342367 + (GGAA)n Simple_repeat Simple_repeat 1 77 0 370 299 56 14 chr4 46946359 46946503 -137342159 - MIR SINE MIR -16 246 97 21 0 0 0 chr4 46946942 46946963 -137341699 + AT_rich Low_complexity Low_complexity 1 21 0 790 202 48 40 chr4 46947075 46947327 -137341335 - PABL_B LTR ERV1 0 667 414 229 349 16 16 chr4 46947487 46947613 -137341049 - PABL_A LTR ERV1 -463 197 72 1072 162 94 42 chr4 46948174 46948305 -137340357 + MER33 DNA MER1_type 1 124 -2461 1886 133 10 7 chr4 46948305 46948606 -137340056 + AluSx SINE Alu 1 302 -10 1072 162 94 42 chr4 46948606 46948782 -137339880 + MER33 DNA MER1_type 124 324 0 1335 210 3 46 chr4 46948803 46949127 -137339535 - L1MA10 LINE L1 -8 6326 6017 2940 56 3 0 chr4 46949173 46949546 -137339116 - L1PA7 LINE L1 -14 6140 5767 8141 258 75 19 chr4 46949879 46953788 -137334874 - L1MC1 LINE L1 -431 6320 2195 1453 127 4 21 chr4 46953814 46954050 -137334612 - Tigger5 DNA MER2_type -3 2320 2089 1005 216 133 31 chr4 46954056 46954327 -137334335 - L1MC1 LINE L1 -4851 1194 1048 1559 179 82 20 chr4 46954327 46954680 -137333982 - THE1C LTR MaLR 0 375 1 1005 216 133 31 chr4 46954680 46954806 -137333856 - L1MC1 LINE L1 -4997 1048 936 290 307 159 0 chr4 46954866 46955029 -137333633 - MIR SINE MIR -1 261 73 31 68 0 0 chr4 46955274 46955333 -137333329 + AT_rich Low_complexity Low_complexity 1 59 0 28 0 0 0 chr4 46955663 46955691 -137332971 + AT_rich Low_complexity Low_complexity 1 28 0 28003 37 2 0 chr4 46956158 46960401 -137328261 + L1PA3 LINE L1 1905 6155 0 22 35 0 0 chr4 46960638 46960667 -137327995 + AT_rich Low_complexity Low_complexity 1 29 0 1911 143 0 0 chr4 46960904 46961209 -137327453 + AluSg SINE Alu 5 309 0 21 0 0 0 chr4 46961690 46961711 -137326951 + AT_rich Low_complexity Low_complexity 1 21 0 210 37 0 0 chr4 46961994 46962021 -137326641 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1711 158 3 7 chr4 46962601 46962899 -137325763 + AluYb8 SINE Alu 22 318 0 1184 121 12 0 chr4 46962902 46963068 -137325594 + AluSg/x SINE Alu 127 294 -16 438 276 49 16 chr4 46963237 46963360 -137325302 - MIR SINE MIR -112 150 24 1376 123 0 18 chr4 46963364 46963592 -137325070 + L1PA8 LINE L1 5939 6162 -10 1937 163 14 20 chr4 46963777 46964126 -137324536 - MER7A DNA MER2_type 0 346 2 734 104 43 18 chr4 46964909 46965072 -137323590 + GA-rich Low_complexity Low_complexity 2 168 0 210 32 0 32 chr4 46965083 46965114 -137323548 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 321 75 0 0 chr4 46965256 46965296 -137323366 - MER85 DNA T2_type -1 138 99 733 322 45 54 chr4 46965356 46965797 -137322865 + MLT1J LTR MaLR 1 437 -74 264 301 59 35 chr4 46965890 46966146 -137322516 + L1MC/D LINE L1 5257 5518 -815 2206 240 58 16 chr4 46966251 46966942 -137321720 + L1MC4a LINE L1 6856 7575 -233 26 64 0 0 chr4 46967954 46968001 -137320661 + AT_rich Low_complexity Low_complexity 1 47 0 2400 108 6 0 chr4 46968002 46968363 -137320299 - L1PB1 LINE L1 -4 6147 5785 235 182 76 15 chr4 46968387 46968453 -137320209 - L1MC4 LINE L1 -1339 6703 6634 * 531 122 12 0 chr4 46968426 46968508 -137320154 - L1PB1 LINE L1 -360 5791 5709 2818 249 45 7 chr4 46968508 46969552 -137319110 + L1MB7 LINE L1 4479 5564 -610 * 4772 174 30 36 chr4 46969546 46970919 -137317743 + L1MA7 LINE L1 4489 5860 -431 2792 107 61 5 chr4 46970919 46971359 -137317303 + MER4C LTR ERV1 1 465 0 4772 174 30 36 chr4 46971359 46971788 -137316874 + L1MA7 LINE L1 5860 6290 -1 22 0 0 0 chr4 46971788 46971810 -137316852 + AT_rich Low_complexity Low_complexity 1 22 0 589 212 93 0 chr4 46971819 46971970 -137316692 + L1MB7 LINE L1 5550 5714 -470 * 5169 159 36 8 chr4 46971968 46972338 -137316324 - L1PA15 LINE L1 -5 6811 6453 421 99 25 49 chr4 46972338 46972419 -137316243 + MADE1 DNA Mariner 2 80 0 5169 159 36 8 chr4 46972419 46973282 -137315380 - L1PA15 LINE L1 -363 6453 5548 2486 94 14 20 chr4 46973289 46973641 -137315021 + THE1B LTR MaLR 15 364 0 12247 219 14 16 chr4 46973647 46975721 -137312941 - L1PA15 LINE L1 -1253 5544 3479 1699 23 0 28 chr4 46975721 46975936 -137312726 - L1PA3 LINE L1 0 6155 5947 12247 219 14 16 chr4 46975936 46976836 -137311826 - L1PA15 LINE L1 -3318 3479 2578 367 276 32 8 chr4 46976819 46976942 -137311720 - L1PA15 LINE L1 -5393 1394 1269 * 1689 239 14 46 chr4 46976942 46977439 -137311223 + L1MB7 LINE L1 5702 6182 -2 31 45 0 30 chr4 46977947 46977969 -137310693 + AT_rich Low_complexity Low_complexity 1 22 -43 2217 208 149 19 chr4 46977969 46978588 -137310074 - LTR34 LTR ERV1 0 699 1 31 45 0 30 chr4 46978588 46978632 -137310030 + AT_rich Low_complexity Low_complexity 22 65 0 446 253 20 48 chr4 46979838 46979984 -137308678 - MER58B DNA MER1_type 0 341 200 1567 233 28 6 chr4 46980151 46980507 -137308155 - MLT1A1 LTR MaLR -1 364 1 3004 237 72 80 chr4 46980512 46981236 -137307426 - MLT1A1-int LTR MaLR -5 1730 1002 3297 193 69 14 chr4 46981236 46981978 -137306684 - LTR39 LTR ERV1 0 783 1 3004 237 72 80 chr4 46981978 46982893 -137305769 - MLT1A1-int LTR MaLR -733 1002 2 1603 236 21 0 chr4 46982914 46983249 -137305413 - MLT1A1 LTR MaLR -23 342 1 1751 197 144 3 chr4 46983309 46983690 -137304972 - LTR47A LTR ERVL -13 439 5 703 219 79 30 chr4 46983750 46984057 -137304605 - LTR35 LTR ERV1 0 669 192 2783 200 6 21 chr4 46984626 46985289 -137303373 - MER44D DNA MER2_type 0 605 2 2008 276 31 33 chr4 46986077 46986188 -137302474 + L1M2 LINE L1 17 127 -7438 1548 80 9 31 chr4 46986188 46986414 -137302248 + AluY SINE Alu 77 297 -14 2008 276 31 33 chr4 46986414 46986940 -137301722 + L1M2 LINE L1 127 653 -6912 1542 203 64 88 chr4 46986940 46987437 -137301225 - LTR8A LTR ERV1 0 727 243 23 33 0 0 chr4 47038679 47038709 -137249953 + AT_rich Low_complexity Low_complexity 1 30 0 291 28 0 0 chr4 47039112 47039148 -137249514 + (T)n Simple_repeat Simple_repeat 1 36 0 876 238 55 64 chr4 47039287 47039436 -137249226 - MLT1A1 LTR MaLR -2 652 503 1013 227 58 37 chr4 47039436 47039731 -137248931 + AluJo SINE Alu 2 302 0 876 238 55 64 chr4 47039731 47040161 -137248501 - MLT1A1 LTR MaLR -151 503 14 373 296 125 31 chr4 47040162 47040547 -137248115 + L1M4 LINE L1 4572 4992 -1154 1611 241 14 32 chr4 47040713 47041145 -137247517 + L1M2 LINE L1 2920 3343 -4223 753 299 19 34 chr4 47041168 47041436 -137247226 - L1M2c LINE L1 -5165 1624 1361 1161 333 68 25 chr4 47041989 47042593 -137246069 - L1M2c LINE L1 -6154 635 6 991 230 44 0 chr4 47042641 47042845 -137245817 + Tigger3b DNA MER2_type 2 214 -1017 2646 73 0 5 chr4 47042845 47043215 -137245447 - L1PA7 LINE L1 -787 5359 4992 5507 90 4 1 chr4 47043215 47043988 -137244674 + L1PA7 LINE L1 5363 6138 -16 4635 145 87 26 chr4 47043996 47044025 -137244637 + Tigger3b DNA MER2_type 198 224 -2804 1878 158 39 18 chr4 47044025 47044355 -137244307 - MER1B DNA MER1_type 0 337 1 4635 145 87 26 chr4 47044355 47045299 -137243363 + Tigger3b DNA MER2_type 224 1231 0 27 49 0 0 chr4 47046020 47046061 -137242601 + AT_rich Low_complexity Low_complexity 1 41 0 1240 261 78 14 chr4 47046740 47047538 -137241124 - L1MEc LINE L1 -3701 2514 1703 514 266 0 0 chr4 47047548 47047661 -137241001 + FLAM_C SINE Alu 7 119 -24 273 98 0 0 chr4 47047661 47047702 -137240960 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 536 312 55 30 chr4 47047751 47048293 -137240369 - L1MEc LINE L1 -4752 1644 1089 5675 71 0 4 chr4 47048632 47049382 -137239280 - L1PA7 LINE L1 0 6154 5408 2373 108 5 5 chr4 47049382 47049765 -137238897 + L1P LINE L1 5031 5413 -741 473 274 133 6 chr4 47049765 47050082 -137238580 - Charlie1 DNA MER1_type -1896 865 509 180 0 0 0 chr4 47050252 47050272 -137238390 + (T)n Simple_repeat Simple_repeat 1 20 0 277 206 219 14 chr4 47050321 47050394 -137238268 - MLT1E LTR MaLR -499 94 7 1462 256 63 50 chr4 47050458 47051740 -137236922 + L1ME2 LINE L1 4651 5950 -214 658 152 45 15 chr4 47051737 47051869 -137236793 - L1MA8 LINE L1 -230 6061 5926 * 21 0 0 0 chr4 47052135 47052156 -137236506 + AT_rich Low_complexity Low_complexity 1 21 0 248 333 54 0 chr4 47052698 47052791 -137235871 - MIR SINE MIR -79 183 86 794 146 0 0 chr4 47052801 47052924 -137235738 + LTR69 LTR ERVL 2 124 -464 583 175 53 9 chr4 47052932 47053046 -137235616 + LTR69 LTR ERVL 225 343 -245 5961 40 18 3 chr4 47053046 47053820 -137234842 - L1P LINE L1 -2758 3388 2603 * 7372 37 0 1 chr4 47053806 47055071 -137233591 + L1PA5 LINE L1 4908 6171 0 1094 250 4 4 chr4 47055075 47055311 -137233351 + LTR69 LTR ERVL 343 578 -10 226 360 43 31 chr4 47055845 47056006 -137232656 + MIR SINE MIR 49 211 -51 1972 175 14 14 chr4 47056280 47056645 -137232017 - MLT1A1 LTR MaLR 0 365 1 435 308 128 19 chr4 47057214 47057425 -137231237 - MIR SINE MIR -8 254 21 564 238 45 78 chr4 47058056 47058325 -137230337 - L2 LINE L2 -7 3306 3047 796 197 167 1 chr4 47059399 47059597 -137229065 + MLT1D LTR MaLR 230 448 -57 211 344 21 11 chr4 47059715 47059808 -137228854 - MER5A DNA MER1_type -31 158 65 1971 123 13 3 chr4 47061354 47061663 -137226999 - AluSx SINE Alu 0 312 1 787 317 63 45 chr4 47061663 47062155 -137226507 - L2 LINE L2 -8 3305 2805 351 0 0 0 chr4 47062322 47062361 -137226301 + (TG)n Simple_repeat Simple_repeat 2 40 0 450 281 37 13 chr4 47063516 47063711 -137224951 - MLT1L LTR MaLR -44 558 347 324 375 51 13 chr4 47064178 47064413 -137224249 + MIR SINE MIR 17 260 -2 484 158 0 0 chr4 47065803 47065901 -137222761 - L1MA9 LINE L1 -8 6288 6186 335 211 67 11 chr4 47065907 47065997 -137222665 - L2 LINE L2 -1 3312 3218 4250 229 46 36 chr4 47066364 47067597 -137221065 + MER45R DNA AcHobo 333 1578 -3 383 223 86 57 chr4 47067662 47067837 -137220825 + MIR SINE MIR 45 224 -38 622 257 103 18 chr4 47067887 47068159 -137220503 - MER110 LTR ERV1 -28 463 169 247 155 24 131 chr4 47068256 47068340 -137220322 - MER110A LTR ERV1 -324 144 70 236 356 24 76 chr4 47069646 47069896 -137218766 - LTR16B LTR ERVL -227 237 1 310 339 16 0 chr4 47071093 47071214 -137217448 + CT-rich Low_complexity Low_complexity 2 124 0 300 356 44 36 chr4 47071996 47072271 -137216391 - LTR16B LTR ERVL -153 311 35 2385 56 38 3 chr4 47073028 47073347 -137215315 - L1PA7 LINE L1 -2 6152 5823 24 0 0 0 chr4 47074309 47074333 -137214329 + AT_rich Low_complexity Low_complexity 1 24 0 489 211 83 23 chr4 47076945 47077078 -137211584 + MER58C DNA MER1_type 67 207 -8 2538 61 0 0 chr4 47077078 47077389 -137211273 + AluY SINE Alu 1 311 0 1554 222 48 13 chr4 47077428 47077824 -137210838 - MLT1C LTR MaLR 0 467 58 233 313 30 53 chr4 47077953 47078084 -137210578 + L2 LINE L2 2964 3091 -222 24 77 0 0 chr4 47078555 47078607 -137210055 + AT_rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr4 47078698 47078720 -137209942 + AT_rich Low_complexity Low_complexity 1 22 0 3374 147 41 48 chr4 47078823 47079533 -137209129 + MER67C LTR ERV1 2 706 -4 1954 60 86 26 chr4 47079703 47079971 -137208691 - AluY SINE Alu -7 304 21 482 338 70 0 chr4 47080686 47080887 -137207775 + MIR SINE MIR 17 231 -31 22 0 0 0 chr4 47081215 47081237 -137207425 + AT_rich Low_complexity Low_complexity 1 22 0 546 272 84 71 chr4 47081271 47081723 -137206939 + MLT1H1 LTR MaLR 1 436 -106 29 28 0 0 chr4 47081987 47082023 -137206639 + AT_rich Low_complexity Low_complexity 1 36 0 1560 179 32 65 chr4 47082124 47082527 -137206135 + MLT1B LTR MaLR 1 390 0 313 219 27 0 chr4 47082717 47082790 -137205872 + LTR67 LTR ERVL 479 553 -4 219 298 244 15 chr4 47083202 47083333 -137205329 + MIR SINE MIR 48 208 -54 1853 128 22 22 chr4 47083386 47083699 -137204963 + AluSq SINE Alu 1 313 0 323 304 0 36 chr4 47085041 47085153 -137203509 - L2 LINE L2 -1 3312 3205 267 114 0 0 chr4 47085339 47085383 -137203279 + (TG)n Simple_repeat Simple_repeat 1 44 0 28 0 0 0 chr4 47085734 47085762 -137202900 + AT_rich Low_complexity Low_complexity 1 28 0 414 307 57 11 chr4 47086436 47086612 -137202050 - MIR SINE MIR -12 250 67 204 316 32 71 chr4 47086723 47086878 -137201784 - MIR SINE MIR -55 207 59 201 269 15 60 chr4 47087583 47087650 -137201012 + L2 LINE L2 3207 3270 -2 238 306 0 0 chr4 47088188 47088237 -137200425 - Alu SINE Alu -116 185 137 436 316 166 0 chr4 47088455 47088642 -137200020 + MIR SINE MIR 18 235 -27 317 288 0 0 chr4 47088644 47088724 -137199938 - MER116 DNA Mariner 0 80 1 232 284 34 23 chr4 47089190 47089278 -137199384 + LTR23 LTR ERV1 336 424 -13 415 333 0 0 chr4 47089897 47090032 -137198630 + GA-rich Low_complexity Low_complexity 2 136 0 24 53 0 0 chr4 47090041 47090079 -137198583 + AT_rich Low_complexity Low_complexity 1 38 0 2220 235 75 65 chr4 47090141 47090783 -137197879 - MER21B LTR ERV1 -11 852 199 738 23 0 0 chr4 47090783 47090870 -137197792 - L1PA5 LINE L1 -8 6146 6060 2220 235 75 65 chr4 47090870 47091071 -137197591 - MER21B LTR ERV1 -664 199 1 519 309 50 27 chr4 47091090 47091310 -137197352 + MIR SINE MIR 28 252 -10 27 29 0 0 chr4 47091339 47091373 -137197289 + AT_rich Low_complexity Low_complexity 1 34 0 1326 167 21 0 chr4 47091392 47091625 -137197037 + LTR24C LTR ERV1 398 635 0 336 290 131 36 chr4 47091626 47091987 -137196675 - MLT1J1 LTR MaLR -46 363 1 618 335 15 8 chr4 47092022 47092282 -137196380 - MLT1J LTR MaLR -247 264 3 1171 199 64 4 chr4 47094010 47094276 -137194386 - L1MA6 LINE L1 -2 6298 6017 * 1395 194 24 18 chr4 47094275 47094604 -137194058 - L1 LINE L1 -2042 5523 5193 40 21 0 0 chr4 47094614 47094661 -137194001 + AT_rich Low_complexity Low_complexity 1 47 0 5960 107 23 10 chr4 47094681 47095721 -137192941 - L1PA13 LINE L1 -4 6810 5785 1979 147 25 20 chr4 47095721 47096074 -137192588 - THE1A LTR MaLR 0 355 1 11035 113 11 1 chr4 47096074 47097637 -137191025 - THE1A-int LTR MaLR 0 1580 1 2212 130 11 11 chr4 47097637 47097992 -137190670 - THE1A LTR MaLR 0 355 1 5960 107 23 10 chr4 47097992 47098531 -137190131 - L1PA13 LINE L1 -1028 5786 5214 9460 194 15 11 chr4 47098636 47099653 -137189009 - L1PA13 LINE L1 -1606 5191 4161 207 0 0 0 chr4 47099653 47099676 -137188986 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 9460 194 15 11 chr4 47099676 47100620 -137188042 - L1PA13 LINE L1 -2636 4161 3222 1803 226 39 3 chr4 47100616 47100979 -137187683 - L1PA13 LINE L1 -6409 378 3 * 1685 203 0 3 chr4 47100996 47101301 -137187361 - AluJo SINE Alu -7 305 2 6016 236 26 17 chr4 47101302 47102157 -137186505 - L1 LINE L1 -2357 5208 4362 1936 181 3 11 chr4 47102157 47102533 -137186129 - L1PA16 LINE L1 0 6166 5794 6016 236 26 17 chr4 47102533 47103170 -137185492 - L1 LINE L1 -3203 4362 3695 2190 193 24 7 chr4 47103170 47103589 -137185073 + MSTB LTR MaLR 1 426 0 6016 236 26 17 chr4 47103589 47103990 -137184672 - L1 LINE L1 -3870 3695 3299 909 62 0 0 chr4 47104270 47104383 -137184279 - AluY SINE Alu -198 113 1 616 278 65 26 chr4 47104411 47104641 -137184021 - Charlie1 DNA MER1_type -2521 240 2 2318 89 0 13 chr4 47104846 47105159 -137183503 + AluY SINE Alu 1 309 -2 211 357 23 16 chr4 47105369 47105498 -137183164 + MIR SINE MIR 79 208 -54 214 198 70 12 chr4 47105528 47105614 -137183048 + (TTATG)n Simple_repeat Simple_repeat 2 92 0 368 304 100 32 chr4 47106037 47106257 -137182405 - MIR SINE MIR -3 259 25 3906 190 11 11 chr4 47106360 47107087 -137181575 + MER57-int LTR ERV1 6419 7145 -392 608 200 66 47 chr4 47107087 47107324 -137181338 + LTR54B LTR ERV1 6 249 -261 1201 170 45 34 chr4 47107349 47107481 -137181181 + MER57A LTR ERV1 133 262 -141 2922 138 88 0 chr4 47107481 47107994 -137180668 + LTR64 LTR ERVK 1 558 0 1201 170 45 34 chr4 47107994 47108126 -137180536 + MER57A LTR ERV1 262 400 -3 1707 120 70 99 chr4 47108273 47108656 -137180006 + THE1C LTR MaLR 1 372 -3 383 308 82 65 chr4 47108662 47109062 -137179600 - MLT1K LTR MaLR -49 539 133 27 29 0 0 chr4 47109596 47109630 -137179032 + AT_rich Low_complexity Low_complexity 1 34 0 470 268 16 8 chr4 47109715 47109838 -137178824 + MIR SINE MIR 83 206 -56 368 261 45 57 chr4 47110424 47110581 -137178081 + MIR SINE MIR 58 212 -50 4154 178 31 66 chr4 47110730 47111538 -137177124 + L1MA7 LINE L1 4549 5384 -907 2916 81 2 0 chr4 47111538 47111932 -137176730 + L1PA13 LINE L1 5750 6144 -19 4154 178 31 66 chr4 47111932 47112916 -137175746 + L1MA7 LINE L1 5384 6291 0 39 38 0 0 chr4 47112916 47112969 -137175693 + AT_rich Low_complexity Low_complexity 1 53 0 2651 216 49 9 chr4 47112969 47113603 -137175059 + MER67C LTR ERV1 52 710 0 21 0 0 0 chr4 47114161 47114182 -137174480 + AT_rich Low_complexity Low_complexity 1 21 0 401 279 50 36 chr4 47114269 47114434 -137174228 + L1ME LINE L1 5273 5439 -727 238 324 0 0 chr4 47114532 47114606 -137174056 + L1ME LINE L1 5565 5638 -532 1954 211 26 15 chr4 47114726 47115115 -137173547 - MER70B LTR ERVL -102 476 84 712 282 94 25 chr4 47115326 47115571 -137173091 + MIR SINE MIR 1 262 0 207 229 0 0 chr4 47116167 47116215 -137172447 + L2 LINE L2 3265 3312 -1 2707 3 40 0 chr4 47116311 47116609 -137172053 - AluYb8 SINE Alu -8 310 1 2052 222 57 2 chr4 47117591 47118014 -137170648 - MER70A LTR ERVL -26 446 1 21 0 0 0 chr4 47118804 47118825 -137169837 + AT_rich Low_complexity Low_complexity 1 21 0 225 231 0 0 chr4 47119042 47119094 -137169568 + L1MC4 LINE L1 6652 6703 -1339 * 235 180 0 0 chr4 47119067 47119117 -137169545 - L1MC4 LINE L1 -1340 6702 6653 23 54 0 0 chr4 47119235 47119272 -137169390 + AT_rich Low_complexity Low_complexity 1 37 0 441 309 119 10 chr4 47119298 47119492 -137169170 + MIR SINE MIR 1 215 -47 879 131 0 182 chr4 47119740 47119976 -137168686 + 7SK RNA RNA 1 193 0 256 305 41 16 chr4 47120013 47120194 -137168468 + L1ME LINE L1 5445 5630 -491 384 335 163 52 chr4 47120365 47120809 -137167853 - L2 LINE L2 -5 3267 2733 399 21 0 0 chr4 47120809 47120857 -137167805 + (TTG)n Simple_repeat Simple_repeat 2 49 0 384 335 163 52 chr4 47120857 47121048 -137167614 - L2 LINE L2 -539 2733 2565 6990 59 0 6 chr4 47121937 47122858 -137165804 - L1PA7 LINE L1 -1 6153 5235 28428 128 26 71 chr4 47122961 47128467 -137160195 - L1P LINE L1 -876 5270 12 21 0 0 0 chr4 47129407 47129428 -137159234 + AT_rich Low_complexity Low_complexity 1 21 0 288 243 68 0 chr4 47129572 47129646 -137159016 + Tigger3(Golem) DNA MER2_type 3 81 -2948 731 175 0 0 chr4 47129651 47129771 -137158891 + Tigger3(Golem) DNA MER2_type 2918 3037 0 287 246 131 23 chr4 47130378 47130508 -137158154 + MER103 DNA DNA 3 146 -20 364 266 105 0 chr4 47130677 47130820 -137157842 - L1MC4a LINE L1 -1220 6588 6431 * 760 281 63 21 chr4 47130813 47131144 -137157518 + L1MC4 LINE L1 6688 7032 -1010 801 218 23 132 chr4 47131175 47131262 -137157400 + MLT2D LTR ERVL 1 96 -366 1720 89 57 0 chr4 47131262 47131508 -137157154 - L1PA6 LINE L1 -6 6148 5889 801 218 23 132 chr4 47131508 47131698 -137156964 + MLT2D LTR ERVL 96 229 -233 207 0 0 0 chr4 47131698 47131721 -137156941 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 801 218 23 132 chr4 47131721 47131826 -137156836 + MLT2D LTR ERVL 229 344 -118 395 216 0 48 chr4 47131877 47132002 -137156660 + L1MC4 LINE L1 7097 7215 -827 21 36 0 0 chr4 47132465 47132493 -137156169 + AT_rich Low_complexity Low_complexity 1 28 0 1725 173 6 16 chr4 47133686 47133998 -137154664 + AluSx SINE Alu 3 311 -1 22 0 0 0 chr4 47134498 47134520 -137154142 + AT_rich Low_complexity Low_complexity 1 22 0 688 319 30 15 chr4 47134652 47134991 -137153671 - L2 LINE L2 -226 3087 2748 493 176 0 102 chr4 47134995 47135103 -137153559 - Tigger7 DNA MER2_type -1 2486 2390 * 2395 215 36 16 chr4 47135097 47135594 -137153068 - Tigger7 DNA MER2_type -1973 514 8 1239 260 188 26 chr4 47135594 47136136 -137152526 - L2 LINE L2 -557 2757 2128 2441 222 41 42 chr4 47136358 47137047 -137151615 + MER76 LTR ERV 1 688 0 29 60 0 0 chr4 47137286 47137336 -137151326 + AT_rich Low_complexity Low_complexity 1 50 0 1260 181 60 115 chr4 47137410 47137829 -137150833 + MSTD LTR MaLR 1 396 0 2319 183 21 2 chr4 47137838 47138258 -137150404 - MSTA LTR MaLR 0 428 1 1683 154 4 0 chr4 47138564 47138839 -137149823 - AluSx SINE Alu 0 315 40 202 315 34 11 chr4 47138971 47139060 -137149602 + MIR SINE MIR 51 141 -121 235 326 99 50 chr4 47139469 47139690 -137148972 + MIR SINE MIR 6 237 -25 292 237 0 0 chr4 47139925 47139984 -137148678 + AluJ/FLAM SINE Alu 3 61 -241 240 35 0 0 chr4 47140077 47140106 -137148556 + (GA)n Simple_repeat Simple_repeat 2 30 0 201 345 35 44 chr4 47140393 47140506 -137148156 - MIR SINE MIR -120 142 31 295 164 0 238 chr4 47141782 47141904 -137146758 - AluJ/FLAM SINE Alu -205 97 5 1084 325 35 9 chr4 47143203 47143655 -137145007 + LTR16B LTR ERVL 1 464 0 21 0 0 0 chr4 47143796 47143817 -137144845 + AT_rich Low_complexity Low_complexity 1 21 0 212 255 20 143 chr4 47145029 47145127 -137143535 + MIR SINE MIR 6 91 -171 26 30 0 0 chr4 47145943 47145976 -137142686 + AT_rich Low_complexity Low_complexity 1 33 0 2594 243 101 17 chr4 47146350 47147106 -137141556 - MER21B LTR ERV1 -2 861 43 308 286 14 0 chr4 47147109 47147179 -137141483 - MER21B LTR ERV1 -774 89 19 240 317 12 24 chr4 47147198 47147280 -137141382 - MER21B LTR ERV1 -770 93 13 258 32 0 0 chr4 47147535 47147566 -137141096 + (TG)n Simple_repeat Simple_repeat 2 32 0 229 229 0 0 chr4 47147704 47147765 -137140897 - LTR66 LTR ERVL -146 464 404 285 309 98 72 chr4 47148042 47148278 -137140384 - L2 LINE L2 -562 2752 2511 1088 302 67 58 chr4 47148636 47149219 -137139443 - MLT1G1 LTR MaLR -5 590 3 356 318 34 14 chr4 47150476 47150624 -137138038 - MIR SINE MIR -83 179 29 9313 219 45 19 chr4 47150713 47151381 -137137281 + L1PB1 LINE L1 2299 2948 -3203 2081 110 3 10 chr4 47151381 47151681 -137136981 + AluSx SINE Alu 1 298 -14 9313 219 45 19 chr4 47151681 47154403 -137134259 + L1PB1 LINE L1 2948 5804 -347 540 0 0 0 chr4 47154403 47154463 -137134199 + (TA)n Simple_repeat Simple_repeat 2 61 0 9313 219 45 19 chr4 47154463 47154813 -137133849 + L1PB1 LINE L1 5804 6143 -8 194 284 42 63 chr4 47155119 47155214 -137133448 + MIR SINE MIR 2 94 -168 535 237 39 39 chr4 47155226 47155395 -137133267 + MIR SINE MIR 71 241 -21 645 282 47 28 chr4 47157237 47157492 -137131170 + LTR33 LTR ERVL 14 273 -248 255 31 0 0 chr4 47157511 47157543 -137131119 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 883 127 12 92 chr4 47157598 47157771 -137130891 - AluSc SINE Alu -62 247 89 22 0 0 0 chr4 47158675 47158697 -137129965 + AT_rich Low_complexity Low_complexity 1 22 0 654 231 20 7 chr4 47159296 47159443 -137129219 - MER58B DNA MER1_type -5 336 188 180 158 0 0 chr4 47161044 47161082 -137127580 + (TA)n Simple_repeat Simple_repeat 2 39 0 187 304 0 0 chr4 47161943 47161989 -137126673 + MIR SINE MIR 207 252 -10 35 0 0 0 chr4 47164119 47164154 -137124508 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr4 47165393 47165435 -137123227 + AT_rich Low_complexity Low_complexity 1 42 0 25 83 0 0 chr4 47165462 47165522 -137123140 + AT_rich Low_complexity Low_complexity 1 60 0 22 0 0 0 chr4 47166232 47166254 -137122408 + AT_rich Low_complexity Low_complexity 1 22 0 289 302 87 24 chr4 47166808 47166934 -137121728 + MIR SINE MIR 110 243 -19 1734 179 0 26 chr4 47168951 47169258 -137119404 + AluJb SINE Alu 1 299 -13 26 30 0 0 chr4 47170446 47170479 -137118183 + AT_rich Low_complexity Low_complexity 1 33 0 944 123 14 0 chr4 47170485 47170623 -137118039 - AluY SINE Alu -169 142 3 252 254 0 0 chr4 47170847 47170918 -137117744 + (TTTA)n Simple_repeat Simple_repeat 2 72 0 189 207 69 35 chr4 47170957 47171015 -137117647 + MIR3 SINE MIR 139 198 -10 291 393 55 22 chr4 47171468 47171743 -137116919 + L2 LINE L2 2558 2841 -473 1046 219 15 0 chr4 47171797 47172002 -137116660 + MER3 DNA MER1_type 2 209 0 49 66 0 0 chr4 47172386 47172477 -137116185 + AT_rich Low_complexity Low_complexity 1 91 0 513 0 0 0 chr4 47173131 47173188 -137115474 + (GGAA)n Simple_repeat Simple_repeat 2 58 0 542 78 23 55 chr4 47173350 47173478 -137115184 + (GGAA)n Simple_repeat Simple_repeat 1 124 0 245 194 45 0 chr4 47173482 47173549 -137115113 + GA-rich Low_complexity Low_complexity 4 73 0 234 246 18 0 chr4 47174428 47174485 -137114177 + L2 LINE L2 3256 3313 0 250 293 94 9 chr4 47175500 47175606 -137113056 + MIR SINE MIR 148 262 0 21 0 0 0 chr4 47176521 47176542 -137112120 + AT_rich Low_complexity Low_complexity 1 21 0 792 299 57 66 chr4 47176611 47177123 -137111539 + MLT1J LTR MaLR 5 511 0 221 319 58 0 chr4 47177750 47177819 -137110843 + MIR SINE MIR 49 121 -141 494 261 165 23 chr4 47177907 47178259 -137110403 - L1M4 LINE L1 -3276 2870 2469 8728 17 0 0 chr4 47178751 47179759 -137108903 - L1HS LINE L1 -1132 5014 4007 7960 9 0 2 chr4 47179753 47180883 -137107779 + L1HS LINE L1 5028 6155 0 * 879 231 8 15 chr4 47180984 47181252 -137107410 + L1HS LINE L1 5890 6155 0 25 0 0 0 chr4 47181259 47181284 -137107378 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr4 47181284 47181307 -137107355 + (A)n Simple_repeat Simple_repeat 1 23 0 680 363 50 28 chr4 47181307 47181863 -137106799 + L2 LINE L2 2746 3310 -3 354 153 0 0 chr4 47182123 47182182 -137106480 - L1M1 LINE L1 -704 5600 5542 307 228 97 61 chr4 47184018 47184132 -137104530 - L1ME3A LINE L1 -90 6080 5963 582 274 97 66 chr4 47184346 47184594 -137104068 - L1ME3A LINE L1 -370 5799 5560 1756 125 0 82 chr4 47184594 47184913 -137103749 - AluSx SINE Alu -19 293 1 582 274 97 66 chr4 47184913 47185198 -137103464 - L1ME3A LINE L1 -609 5560 5254 276 30 0 0 chr4 47185454 47185487 -137103175 + (TG)n Simple_repeat Simple_repeat 2 34 0 184 356 0 11 chr4 47186078 47186165 -137102497 + MIR SINE MIR 105 190 -72 24 0 0 0 chr4 47186808 47186832 -137101830 + AT_rich Low_complexity Low_complexity 1 24 0 206 118 0 0 chr4 47187019 47187053 -137101609 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6813 32 1 0 chr4 47187080 47187891 -137100771 - L1PA3 LINE L1 0 6155 5344 * 9602 27 7 17 chr4 47187883 47189087 -137099575 + L1PA3 LINE L1 4153 5344 -802 21 71 0 0 chr4 47189406 47189448 -137099214 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr4 47189884 47189908 -137098754 + AT_rich Low_complexity Low_complexity 1 24 0 2316 65 0 0 chr4 47190936 47191226 -137097436 - AluY SINE Alu -21 290 1 480 354 41 4 chr4 47191563 47191809 -137096853 - MIR SINE MIR -6 256 2 316 191 22 11 chr4 47192050 47192139 -137096523 + (TATG)n Simple_repeat Simple_repeat 3 92 0 21 0 0 0 chr4 47192805 47192826 -137095836 + AT_rich Low_complexity Low_complexity 1 21 0 248 197 0 33 chr4 47195762 47195823 -137092839 - MLT2D LTR ERVL 0 520 462 1384 210 17 10 chr4 47195875 47196170 -137092492 - MLT2D LTR ERVL -68 346 50 1649 186 27 30 chr4 47196170 47196498 -137092164 + Tigger3(Golem) DNA MER2_type 1 327 -2702 203 119 48 36 chr4 47196625 47196709 -137091953 + (TATATG)n Simple_repeat Simple_repeat 5 89 0 4242 155 77 5 chr4 47196720 47197551 -137091111 + Tigger3b DNA MER2_type 341 1231 0 367 85 0 0 chr4 47197555 47197602 -137091060 - MLT2D LTR ERVL -417 47 1 27 29 0 0 chr4 47198152 47198186 -137090476 + AT_rich Low_complexity Low_complexity 1 34 0 25 0 0 0 chr4 47198252 47198277 -137090385 + AT_rich Low_complexity Low_complexity 1 25 0 28 0 0 0 chr4 47198327 47198355 -137090307 + AT_rich Low_complexity Low_complexity 1 28 0 1761 184 12 12 chr4 47198843 47199174 -137089488 - MER44D DNA MER2_type -8 601 1 22 0 0 0 chr4 47199532 47199554 -137089108 + AT_rich Low_complexity Low_complexity 1 22 0 34 24 0 0 chr4 47200256 47200297 -137088365 + AT_rich Low_complexity Low_complexity 1 41 0 27 49 0 0 chr4 47200540 47200581 -137088081 + AT_rich Low_complexity Low_complexity 1 41 0 713 185 0 0 chr4 47200581 47200700 -137087962 - FLAM_C SINE Alu -14 119 1 1371 181 40 16 chr4 47200997 47201318 -137087344 + L1PB4 LINE L1 5827 6155 -1 378 0 0 0 chr4 47201567 47201609 -137087053 + (TA)n Simple_repeat Simple_repeat 2 43 0 23 0 0 0 chr4 47202134 47202157 -137086505 + AT_rich Low_complexity Low_complexity 1 23 0 1756 36 0 5 chr4 47202300 47202519 -137086143 + L1PA4 LINE L1 5938 6155 0 23 92 0 0 chr4 47203008 47203073 -137085589 + AT_rich Low_complexity Low_complexity 1 65 0 22 35 0 0 chr4 47203175 47203204 -137085458 + AT_rich Low_complexity Low_complexity 1 29 0 28 61 0 0 chr4 47203231 47203280 -137085382 + AT_rich Low_complexity Low_complexity 1 49 0 186 246 0 0 chr4 47203666 47203727 -137084935 + GA-rich Low_complexity Low_complexity 2 62 0 28 61 0 0 chr4 47203997 47204046 -137084616 + AT_rich Low_complexity Low_complexity 1 49 0 1237 178 167 55 chr4 47206888 47207236 -137081426 + MLT1B LTR MaLR 3 389 -1 220 275 0 29 chr4 47207514 47207583 -137081079 + CT-rich Low_complexity Low_complexity 5 71 0 369 357 100 60 chr4 47207783 47208865 -137079797 + L2 LINE L2 1853 2977 -337 28 71 0 0 chr4 47211846 47211902 -137076760 + AT_rich Low_complexity Low_complexity 1 56 0 390 62 0 173 chr4 47212083 47212164 -137076498 - MER41A LTR ERV1 -90 464 398 516 292 38 5 chr4 47212256 47212441 -137076221 - L1M4 LINE L1 -2423 3723 3533 259 270 80 0 chr4 47212488 47212588 -137076074 + L1MC4 LINE L1 7699 7806 -236 * 399 232 54 27 chr4 47212585 47212770 -137075892 + L1M4 LINE L1 2764 2953 -3193 698 237 34 29 chr4 47213114 47213321 -137075341 - MER3 DNA MER1_type 0 209 2 1423 301 86 12 chr4 47213324 47213896 -137074766 + MER20B DNA MER1_type 1 614 -169 252 0 0 0 chr4 47213943 47213971 -137074691 + (CA)n Simple_repeat Simple_repeat 2 29 0 411 38 0 0 chr4 47213996 47214049 -137074613 + (TG)n Simple_repeat Simple_repeat 2 54 0 1727 182 0 3 chr4 47214885 47215181 -137073481 + AluJb SINE Alu 1 295 -17 21 0 0 0 chr4 47215859 47215880 -137072782 + AT_rich Low_complexity Low_complexity 1 21 0 537 16 0 0 chr4 47216138 47216200 -137072462 + (CA)n Simple_repeat Simple_repeat 2 63 0 581 319 72 17 chr4 47216861 47217422 -137071240 + L1MDa LINE L1 1455 2060 -4481 330 283 25 74 chr4 47217688 47217984 -137070678 + L1MDa LINE L1 2461 2733 -3988 2160 107 3 26 chr4 47217984 47218292 -137070370 + AluSp SINE Alu 1 301 -12 330 283 25 74 chr4 47218292 47218401 -137070261 + L1MDa LINE L1 2733 2846 -3875 3005 137 35 4 chr4 47218432 47218951 -137069711 + L1MA3 LINE L1 5769 6303 -2 274 247 62 62 chr4 47218973 47219119 -137069543 + L1MDa LINE L1 2824 2969 -3571 314 252 30 15 chr4 47219169 47219300 -137069362 + L1MDa LINE L1 3178 3310 -3230 300 283 34 73 chr4 47220713 47220946 -137067716 + HAL1b LINE L1 349 572 -776 1594 149 45 3 chr4 47221028 47221316 -137067346 - L1PA14 LINE L1 -6 6155 5856 209 227 0 0 chr4 47221417 47221461 -137067201 + A-rich Low_complexity Low_complexity 1 44 0 234 248 106 26 chr4 47221990 47222103 -137066559 + L1MDa LINE L1 4503 4624 -1916 234 381 0 0 chr4 47222842 47222905 -137065757 - MER91B DNA MER1_type -126 64 2 257 336 74 16 chr4 47223213 47223335 -137065327 - MIR3 SINE MIR -27 181 53 1047 265 66 18 chr4 47224370 47224730 -137063932 + MLT1I LTR MaLR 46 406 -3 319 237 51 51 chr4 47225010 47225128 -137063534 - MIR SINE MIR -105 157 40 1647 100 16 0 chr4 47225441 47225691 -137062971 + L1PA13 LINE L1 5908 6161 -2 195 307 148 0 chr4 47226373 47226461 -137062201 - MIR SINE MIR -109 153 53 189 417 52 0 chr4 47226747 47226862 -137061800 - L2 LINE L2 -18 3254 3134 1007 291 69 5 chr4 47227389 47227764 -137060898 + LTR16B LTR ERVL 1 399 -65 403 264 45 9 chr4 47228174 47228284 -137060378 - MER94 DNA DNA -19 115 2 24 0 0 0 chr4 47228670 47228694 -137059968 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr4 47228846 47228871 -137059791 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 47229086 47229108 -137059554 + AT_rich Low_complexity Low_complexity 1 22 0 299 338 15 15 chr4 47229189 47229325 -137059337 - MIR3 SINE MIR -6 202 67 283 296 0 57 chr4 47229929 47230017 -137058645 - L2 LINE L2 -5 3308 3226 222 355 82 0 chr4 47230022 47230132 -137058530 + MIR SINE MIR 16 134 -74 260 279 96 48 chr4 47230685 47230893 -137057769 + HAL1 LINE L1 1958 2175 -332 643 95 19 0 chr4 47230943 47231048 -137057614 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 1693 98 16 0 chr4 47232132 47232387 -137056275 - L1MA1 LINE L1 -9 6293 6035 351 333 8 0 chr4 47232673 47232793 -137055869 + CT-rich Low_complexity Low_complexity 4 124 0 385 255 38 0 chr4 47233815 47233921 -137054741 + L2 LINE L2 3203 3312 -1 359 304 40 16 chr4 47233934 47234059 -137054603 - MIR SINE MIR -90 172 45 425 275 12 84 chr4 47234089 47234256 -137054406 + L2 LINE L2 2619 2773 -541 4279 268 20 12 chr4 47234262 47235690 -137052972 - L1PA16 LINE L1 -2534 3612 2174 * 6860 213 24 7 chr4 47235689 47238154 -137050508 + L1PA16 LINE L1 3618 6162 -1 2175 136 24 27 chr4 47238365 47238741 -137049921 - THE1C LTR MaLR 0 375 1 314 303 67 18 chr4 47238856 47239021 -137049641 + L2 LINE L2 3141 3313 0 403 292 66 29 chr4 47242077 47242214 -137046448 - MER91B DNA MER1_type 0 190 49 246 295 105 21 chr4 47242427 47242522 -137046140 + L2 LINE L2 3209 3311 -2 501 58 0 0 chr4 47242750 47242819 -137045843 + (TC)n Simple_repeat Simple_repeat 2 70 0 303 296 23 0 chr4 47242821 47242909 -137045753 - L1MC4 LINE L1 -1339 6703 6614 210 191 0 0 chr4 47242909 47242951 -137045711 + (TA)n Simple_repeat Simple_repeat 2 43 0 287 278 0 0 chr4 47242951 47243041 -137045621 - L1MC4 LINE L1 -1339 6703 6614 183 184 0 0 chr4 47243039 47243077 -137045585 + (TA)n Simple_repeat Simple_repeat 2 39 0 * 301 282 47 0 chr4 47243058 47243177 -137045485 + L1MC4 LINE L1 6615 6703 -1339 200 219 0 0 chr4 47243766 47243807 -137044855 - L2 LINE L2 -11 3302 3262 26 0 0 0 chr4 47243975 47244001 -137044661 + AT_rich Low_complexity Low_complexity 1 26 0 1688 116 0 146 chr4 47244003 47244338 -137044324 - AluSx SINE Alu -26 286 1 323 166 7 159 chr4 47245383 47245528 -137043134 - L1ME4a LINE L1 -32 6089 5967 336 317 0 29 chr4 47245982 47246086 -137042576 + L2 LINE L2 3210 3310 -3 248 358 73 0 chr4 47246301 47246438 -137042224 - L3 LINE CR1 -189 1388 1242 192 40 0 0 chr4 47246492 47246517 -137042145 + (TG)n Simple_repeat Simple_repeat 2 26 0 218 385 48 0 chr4 47246526 47246609 -137042053 - L3 LINE CR1 -450 1127 1041 300 404 20 7 chr4 47246764 47246910 -137041752 + MIR SINE MIR 12 159 -103 367 282 69 27 chr4 47246940 47247128 -137041534 - HAL1 LINE L1 -899 1608 1413 33 25 0 0 chr4 47247135 47247175 -137041487 + AT_rich Low_complexity Low_complexity 1 40 0 24 0 0 0 chr4 47248840 47248864 -137039798 + AT_rich Low_complexity Low_complexity 1 24 0 203 247 140 32 chr4 47249390 47249483 -137039179 - MIR3 SINE MIR -1 207 105 432 37 0 0 chr4 47250487 47250541 -137038121 + (CA)n Simple_repeat Simple_repeat 1 54 0 228 86 0 0 chr4 47251952 47251987 -137036675 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 23 33 0 0 chr4 47252897 47252927 -137035735 + AT_rich Low_complexity Low_complexity 1 30 0 898 261 9 9 chr4 47253933 47254151 -137034511 + MER20 DNA MER1_type 2 219 0 314 259 37 0 chr4 47254571 47254652 -137034010 - L2 LINE L2 0 3272 3189 486 239 0 18 chr4 47254658 47254771 -137033891 + MIR SINE MIR 116 226 -36 209 233 17 50 chr4 47255265 47255325 -137033337 - MIR SINE MIR 0 262 205 447 289 14 21 chr4 47255522 47255664 -137032998 + L2 LINE L2 3169 3309 -4 231 36 0 0 chr4 47255718 47255746 -137032916 + (TA)n Simple_repeat Simple_repeat 2 29 0 410 329 106 57 chr4 47256279 47256750 -137031912 + L2 LINE L2 1794 2287 -1027 346 259 59 0 chr4 47256970 47257055 -137031607 + MIR SINE MIR 163 252 -10 425 366 80 22 chr4 47257141 47257603 -137031059 + L2 LINE L2 2552 3048 -224 249 317 50 42 chr4 47257684 47257804 -137030858 - L2 LINE L2 0 3313 3193 180 320 133 16 chr4 47257871 47257999 -137030663 + L2 LINE L2 3170 3312 -1 22 0 0 0 chr4 47258134 47258156 -137030506 + AT_rich Low_complexity Low_complexity 1 22 0 295 374 45 7 chr4 47258270 47258425 -137030237 + MIR SINE MIR 37 197 -65 717 317 15 27 chr4 47258554 47258816 -137029846 - MIR SINE MIR -3 259 1 22 0 0 0 chr4 47259192 47259214 -137029448 + AT_rich Low_complexity Low_complexity 1 22 0 650 324 57 17 chr4 47259493 47259996 -137028666 + ERVL LTR ERVL 955 1515 -4249 1452 231 31 22 chr4 47260185 47260544 -137028118 + MLT1A1 LTR MaLR 2 363 -2 4818 317 68 19 chr4 47260548 47263105 -137025557 + ERVL LTR ERVL 1635 4335 -1429 4589 179 11 3 chr4 47263106 47264238 -137024424 + L1PA15 LINE L1 4886 6031 -134 2079 111 7 0 chr4 47264382 47264670 -137023992 - AluSc SINE Alu -19 290 1 2174 165 70 1 chr4 47264791 47265183 -137023479 + MSTA LTR MaLR 14 428 0 21 57 0 0 chr4 47265938 47265973 -137022689 + AT_rich Low_complexity Low_complexity 1 35 0 201 369 43 14 chr4 47266056 47266197 -137022465 + MER5B DNA MER1_type 11 155 -23 213 208 26 52 chr4 47266933 47267010 -137021652 + L3 LINE CR1 521 595 -982 2011 245 128 29 chr4 47267164 47267924 -137020738 - L1ME1 LINE L1 -6 6160 5326 13107 215 43 17 chr4 47267938 47269464 -137019198 - L1PB2 LINE L1 0 6867 5381 1952 125 7 37 chr4 47269464 47269761 -137018901 - AluSx SINE Alu -19 293 6 13107 215 43 17 chr4 47269761 47275739 -137012923 - L1PB2 LINE L1 -1486 5381 3 897 271 45 0 chr4 47275801 47276093 -137012569 - L1ME1 LINE L1 -850 5296 4992 2634 17 7 3 chr4 47276107 47276407 -137012255 - AluYb8 SINE Alu -17 301 1 1061 228 9 0 chr4 47276407 47276635 -137012027 + MLT2B1 LTR ERVL 3 232 -288 478 204 65 25 chr4 47276652 47276853 -137011809 + L1M4 LINE L1 3125 3333 -2813 530 246 76 6 chr4 47276860 47277031 -137011631 - MER58C DNA MER1_type -6 209 27 638 306 23 7 chr4 47277039 47277346 -137011316 + L1M4 LINE L1 3328 3639 -2507 710 241 20 41 chr4 47277392 47277587 -137011075 - MLT1D LTR MaLR 0 505 315 1065 274 78 8 chr4 47277592 47277950 -137010712 - L1MCc LINE L1 -6022 401 19 34 72 0 0 chr4 47278695 47278764 -137009898 + AT_rich Low_complexity Low_complexity 1 69 0 2515 31 3 0 chr4 47279057 47279347 -137009315 + AluY SINE Alu 20 310 -1 34 0 0 0 chr4 47279666 47279700 -137008962 + AT_rich Low_complexity Low_complexity 1 34 0 274 218 141 0 chr4 47279712 47279790 -137008872 + MER103 DNA DNA 52 140 -26 25 65 0 0 chr4 47280139 47280185 -137008477 + AT_rich Low_complexity Low_complexity 1 46 0 674 191 0 0 chr4 47280893 47281008 -137007654 + Tigger4(Zombi) DNA MER2_type 1 115 -2616 331 298 53 15 chr4 47281140 47281271 -137007391 + L2 LINE L2 3137 3272 0 198 204 23 0 chr4 47282708 47282752 -137005910 - MIR SINE MIR -14 248 204 2625 92 85 12 chr4 47284006 47284381 -137004281 + MLT2A1 LTR ERVL 1 410 -34 216 0 0 0 chr4 47284381 47284405 -137004257 + (TA)n Simple_repeat Simple_repeat 2 25 0 2625 92 85 12 chr4 47284405 47284442 -137004220 + MLT2A1 LTR ERVL 410 443 -1 6580 78 1 6 chr4 47284443 47285296 -137003366 + HERVL-A1 LTR ERVL 1 849 -4805 * 11791 83 13 2 chr4 47285280 47286838 -137001824 + HERVL-A1 LTR ERVL 4080 5654 0 2886 108 28 7 chr4 47286838 47287265 -137001397 + MLT2A1 LTR ERVL 1 436 -8 234 0 0 0 chr4 47287597 47287623 -137001039 + (TG)n Simple_repeat Simple_repeat 2 27 0 279 336 56 9 chr4 47288381 47288488 -137000174 + L2 LINE L2 3196 3307 -6 21 0 0 0 chr4 47288538 47288559 -137000103 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr4 47289618 47289655 -136999007 + AT_rich Low_complexity Low_complexity 1 37 0 2834 107 27 14 chr4 47290068 47290641 -136998021 - L1P4 LINE L1 -477 5691 5110 1367 199 13 23 chr4 47290641 47290947 -136997715 - AluJo SINE Alu -4 308 6 21 36 0 0 chr4 47291030 47291058 -136997604 + AT_rich Low_complexity Low_complexity 1 28 0 1924 94 71 4 chr4 47291623 47291932 -136996730 + AluSq SINE Alu 1 327 0 197 355 0 16 chr4 47292972 47293034 -136995628 - L2 LINE L2 -11 3261 3201 180 394 0 0 chr4 47293115 47293181 -136995481 - L2 LINE L2 -201 3071 3006 313 451 25 86 chr4 47293196 47293520 -136995142 - MER46C DNA MER2_type -10 328 25 261 302 249 10 chr4 47293548 47293595 -136995067 - MIR SINE MIR 0 262 227 2282 153 0 21 chr4 47293595 47293967 -136994695 - THE1B LTR MaLR 0 364 1 261 302 249 10 chr4 47293967 47293984 -136994678 - MIR SINE MIR -35 227 215 25 31 0 0 chr4 47293984 47294016 -136994646 + AT_rich Low_complexity Low_complexity 1 32 0 261 302 249 10 chr4 47294016 47294124 -136994538 - MIR SINE MIR -47 215 9 183 329 67 46 chr4 47294316 47294556 -136994106 - L2 LINE L2 -922 2392 2148 2184 151 8 30 chr4 47294582 47294954 -136993708 - THE1B LTR MaLR 0 364 1 29 28 0 0 chr4 47295088 47295124 -136993538 + AT_rich Low_complexity Low_complexity 1 36 0 451 149 214 24 chr4 47295330 47295457 -136993205 + MSTA LTR MaLR 207 362 -70 1804 257 60 21 chr4 47295457 47295939 -136992723 + L1PA12 LINE L1 16 516 -7065 5118 250 29 11 chr4 47295941 47297427 -136991235 + L1PA12 LINE L1 2380 3892 -3692 444 216 0 0 chr4 47297427 47297529 -136991133 + (CATATA)n Simple_repeat Simple_repeat 4 105 0 2180 160 5 19 chr4 47297548 47297917 -136990745 + THE1B LTR MaLR 1 364 0 758 137 61 0 chr4 47297917 47298048 -136990614 + THE1B-int LTR MaLR 1 139 -1441 1202 118 15 0 chr4 47298148 47298343 -136990319 + L1PA13 LINE L1 5966 6163 0 1933 121 50 0 chr4 47298419 47298716 -136989946 - AluSx SINE Alu 0 312 1 2487 193 30 22 chr4 47298886 47299388 -136989274 + MER67A LTR ERV1 25 530 -13 7039 44 3 0 chr4 47299770 47300632 -136988030 - L1P LINE L1 -1843 4303 3439 2345 32 0 0 chr4 47300632 47300908 -136987754 + L1PA5 LINE L1 5870 6148 -6 924 71 0 2 chr4 47301255 47301509 -136987153 + AluY SINE Alu 1 309 -2 357 332 87 29 chr4 47303032 47303273 -136985389 - MLT1I LTR MaLR -13 396 142 3916 41 0 4 chr4 47303787 47304313 -136984349 + L1PA4 LINE L1 5667 6190 0 449 193 167 0 chr4 47304338 47304452 -136984210 + L1PB4 LINE L1 6021 6153 -3 215 233 0 0 chr4 47305271 47305314 -136983348 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 261 308 121 0 chr4 47305315 47305406 -136983256 + MIR SINE MIR 90 191 -71 2622 186 21 40 chr4 47305488 47306069 -136982593 + MER101B LTR ERV1 1 570 0 382 243 19 28 chr4 47306086 47306193 -136982469 - L2 LINE L2 -20 3293 3188 2378 68 0 0 chr4 47306507 47306803 -136981859 + THE1C-int LTR MaLR 1285 1580 0 562 118 0 0 chr4 47306803 47306879 -136981783 + THE1C LTR MaLR 1 76 -299 6943 196 17 0 chr4 47306879 47308269 -136980393 + L1PA11 LINE L1 2543 3956 -2190 1539 43 0 0 chr4 47308269 47308452 -136980210 + L1PA3 LINE L1 5968 6153 -2 * 7473 159 34 0 chr4 47308447 47310637 -136978025 + L1PA11 LINE L1 3951 6172 -2 39 84 0 0 chr4 47310742 47310837 -136977825 + AT_rich Low_complexity Low_complexity 1 95 0 2194 55 0 0 chr4 47311553 47311825 -136976837 + L1PA3 LINE L1 5878 6149 -6 207 0 0 0 chr4 47311833 47311856 -136976806 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 1182 221 101 45 chr4 47312065 47312441 -136976221 + MLT1E1 LTR MaLR 1 397 -257 231 246 53 53 chr4 47312563 47312677 -136975985 - MIR SINE MIR -57 205 92 236 152 152 22 chr4 47312871 47312963 -136975699 + L1ME4a LINE L1 6008 6111 -10 263 278 19 0 chr4 47313154 47313208 -136975454 + MIR SINE MIR 15 69 -193 234 363 0 67 chr4 47313269 47313404 -136975258 + MIR SINE MIR 14 139 -123 28 29 0 0 chr4 47313460 47313495 -136975167 + AT_rich Low_complexity Low_complexity 1 35 0 305 348 7 28 chr4 47313891 47314032 -136974630 - L2 LINE L2 -5 3308 3171 2094 121 3 0 chr4 47314033 47314323 -136974339 + AluSc SINE Alu 1 291 -18 250 221 0 53 chr4 47314324 47314419 -136974243 + L1MC4 LINE L1 6614 6703 -1339 315 310 0 0 chr4 47314420 47314507 -136974155 + L1MC4 LINE L1 6615 6701 -1341 189 147 0 0 chr4 47315607 47315641 -136973021 + (A)n Simple_repeat Simple_repeat 1 34 0 2307 98 3 0 chr4 47315849 47316155 -136972507 + AluSp SINE Alu 1 307 -6 540 302 69 51 chr4 47316155 47316546 -136972116 + MLT1J2 LTR MaLR 2 399 -51 428 380 45 4 chr4 47317450 47317692 -136970970 + MIR SINE MIR 3 254 -8 22 70 0 0 chr4 47317692 47317735 -136970927 + AT_rich Low_complexity Low_complexity 1 43 0 259 351 52 0 chr4 47317824 47317978 -136970684 - MIR SINE MIR -15 247 86 897 245 79 100 chr4 47318173 47318642 -136970020 - MLT1C LTR MaLR -6 461 3 22 0 0 0 chr4 47319447 47319469 -136969193 + AT_rich Low_complexity Low_complexity 1 22 0 628 220 234 14 chr4 47320006 47320356 -136968306 - L1ME3A LINE L1 -5 6165 5739 28 48 0 0 chr4 47320406 47320448 -136968214 + AT_rich Low_complexity Low_complexity 1 42 0 589 259 143 11 chr4 47321526 47321715 -136966947 + MIR SINE MIR 49 262 0 384 313 28 0 chr4 47321815 47321959 -136966703 + MIR SINE MIR 50 197 -65 1623 155 74 19 chr4 47322503 47322826 -136965836 + MER61A LTR ERV1 3 343 0 340 410 65 24 chr4 47323870 47324363 -136964299 + L2 LINE L2 2325 2837 -477 189 329 0 14 chr4 47324471 47324541 -136964121 + L2 LINE L2 2985 3053 -219 593 320 30 5 chr4 47324902 47325102 -136963560 + MIR SINE MIR 49 253 -9 21 0 0 0 chr4 47325523 47325544 -136963118 + AT_rich Low_complexity Low_complexity 1 21 0 272 374 143 25 chr4 47325718 47326151 -136962511 + L2 LINE L2 2830 3313 0 1850 163 21 3 chr4 47326200 47326531 -136962131 + MER1B DNA MER1_type 1 337 0 329 304 22 51 chr4 47326922 47327060 -136961602 - MIR SINE MIR -3 259 126 308 294 78 106 chr4 47327078 47327199 -136961463 - L1MEc LINE L1 -6122 274 162 2394 83 3 0 chr4 47327199 47327501 -136961161 - AluSp SINE Alu -10 303 1 308 294 78 106 chr4 47327501 47327624 -136961038 - L1MEc LINE L1 -6234 162 37 21 71 0 0 chr4 47328212 47328254 -136960408 + AT_rich Low_complexity Low_complexity 1 42 0 331 231 68 43 chr4 47328453 47328570 -136960092 + MIR SINE MIR 82 201 -61 416 298 36 74 chr4 47329365 47330077 -136958585 + L1MEd LINE L1 569 1253 -4866 4742 163 26 12 chr4 47330415 47331295 -136957367 + L1PB4 LINE L1 5263 6154 -2 298 268 105 30 chr4 47331289 47331584 -136957078 + L1MEd LINE L1 2913 3229 -2900 * 721 299 53 70 chr4 47331585 47332056 -136956606 + MLT1J LTR MaLR 47 509 -2 399 344 82 33 chr4 47332096 47332462 -136956200 - L2 LINE L2 -1898 1416 1033 577 208 0 9 chr4 47332542 47332687 -136955975 + FLAM_A SINE Alu 13 156 0 22 80 0 0 chr4 47332929 47332979 -136955683 + AT_rich Low_complexity Low_complexity 1 50 0 180 111 0 0 chr4 47334964 47334991 -136953671 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 355 222 9 9 chr4 47335106 47335214 -136953448 + (CATA)n Simple_repeat Simple_repeat 4 111 0 615 223 8 0 chr4 47336266 47336396 -136952266 + FLAM_A SINE Alu 1 131 -2 457 307 19 42 chr4 47336538 47336750 -136951912 + MIR SINE MIR 48 254 -8 1576 216 14 14 chr4 47337139 47337487 -136951175 + MLT1A1 LTR MaLR 10 357 -8 15516 34 1 3 chr4 47337712 47340355 -136948307 + L1PA4 LINE L1 3520 6161 0 446 258 107 56 chr4 47340702 47340880 -136947782 - MIR SINE MIR -12 250 64 21 0 0 0 chr4 47341283 47341304 -136947358 + AT_rich Low_complexity Low_complexity 1 21 0 309 399 75 4 chr4 47341342 47341570 -136947092 + HAL1b LINE L1 410 653 -695 555 245 37 83 chr4 47341583 47341703 -136946959 - MIR SINE MIR -1 261 137 1509 201 99 9 chr4 47341703 47342046 -136946616 - MLT1A2 LTR MaLR 0 374 1 555 245 37 83 chr4 47342046 47342072 -136946590 - MIR SINE MIR -125 137 111 2200 172 60 0 chr4 47342072 47342473 -136946189 - MSTB LTR MaLR -1 425 1 555 245 37 83 chr4 47342473 47342566 -136946096 - MIR SINE MIR -151 111 32 340 180 11 11 chr4 47342952 47343041 -136945621 + CT-rich Low_complexity Low_complexity 1 89 0 271 313 50 10 chr4 47343501 47343600 -136945062 - L3 LINE CR1 -1081 496 394 3426 194 61 26 chr4 47343676 47343892 -136944770 - L1MA10 LINE L1 -7 6327 6120 1959 155 0 3 chr4 47343892 47344188 -136944474 - AluSx SINE Alu -17 295 1 3426 194 61 26 chr4 47344188 47344940 -136943722 - L1MA10 LINE L1 -214 6120 5340 2031 204 35 4 chr4 47344939 47345401 -136943261 + L1 LINE L1 4318 4793 -1353 * 1566 134 21 90 chr4 47345418 47345753 -136942909 + MER44D DNA MER2_type 4 585 -24 2192 222 33 49 chr4 47345754 47346308 -136942354 + Tigger7 DNA MER2_type 2 564 -2023 3278 83 5 0 chr4 47346308 47346754 -136941908 - L1PA7 LINE L1 0 6154 5707 2192 222 33 49 chr4 47346754 47346829 -136941833 + Tigger7 DNA MER2_type 564 2506 -81 274 302 0 0 chr4 47346830 47346893 -136941769 - MER2 DNA MER2_type -3 342 280 1116 145 6 6 chr4 47346931 47347110 -136941552 - AluSg SINE Alu -88 222 44 1214 228 22 96 chr4 47347110 47347589 -136941073 + MLT2B3 LTR ERVL 128 507 -8 27895 194 43 25 chr4 47347598 47353249 -136935413 + ERVL-B3-B2 LTR ERVL 2 5755 -9 1999 229 45 11 chr4 47353251 47353692 -136934970 + MLT2B2 LTR ERVL 1 456 -59 525 80 0 0 chr4 47353692 47353767 -136934895 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 198 156 0 0 chr4 47353780 47353825 -136934837 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 641 226 0 8 chr4 47353848 47353972 -136934690 - FLAM_C SINE Alu -12 131 9 803 131 7 15 chr4 47354002 47354139 -136934523 - MLT2B1 LTR ERVL -384 136 1 10348 32 2 0 chr4 47355475 47357492 -136931170 - L1PA4 LINE L1 0 6155 4137 227 320 8 57 chr4 47359456 47359578 -136929084 + LTR67 LTR ERVL 102 217 -340 3942 30 2 0 chr4 47359694 47360168 -136928494 - L1PA3 LINE L1 -1 6154 5680 3499 31 0 0 chr4 47360168 47360714 -136927948 + L1PA3 LINE L1 5128 5673 -482 501 295 104 46 chr4 47361253 47361494 -136927168 + MIR SINE MIR 8 262 0 1409 269 67 20 chr4 47361527 47362021 -136926641 - LTR40a LTR ERVL 0 519 3 670 259 25 13 chr4 47362022 47362180 -136926482 - HERVL40 LTR ERVL 0 5530 5371 28 48 0 0 chr4 47362514 47362556 -136926106 + AT_rich Low_complexity Low_complexity 1 42 0 576 226 74 52 chr4 47362664 47362894 -136925768 + L1MEd LINE L1 1023 1257 -4862 1807 138 10 30 chr4 47364149 47364453 -136924209 + AluSx SINE Alu 1 298 -14 1338 189 32 32 chr4 47364896 47365208 -136923454 - AluJo SINE Alu 0 312 1 23 68 0 0 chr4 47366580 47366624 -136922038 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr4 47367636 47367665 -136920997 + AT_rich Low_complexity Low_complexity 1 29 0 196 53 53 0 chr4 47369106 47369144 -136919518 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 254 359 0 0 chr4 47369239 47369317 -136919345 + MIR SINE MIR 170 247 -15 226 152 0 22 chr4 47369785 47369831 -136918831 + (CA)n Simple_repeat Simple_repeat 2 46 0 30 93 0 0 chr4 47370365 47370451 -136918211 + AT_rich Low_complexity Low_complexity 1 86 0 32 26 0 0 chr4 47371278 47371317 -136917345 + AT_rich Low_complexity Low_complexity 1 39 0 24 64 0 39 chr4 47373026 47373104 -136915558 + AT_rich Low_complexity Low_complexity 1 75 0 483 48 0 0 chr4 47373121 47373183 -136915479 + (TG)n Simple_repeat Simple_repeat 1 62 0 398 329 102 36 chr4 47375302 47375527 -136913135 + L2 LINE L2 2557 2796 -518 362 385 60 25 chr4 47375665 47375982 -136912680 + L2 LINE L2 2967 3294 -19 27 49 0 0 chr4 47375987 47376028 -136912634 + AT_rich Low_complexity Low_complexity 1 41 0 363 321 95 33 chr4 47376478 47376721 -136911941 - MIR SINE MIR 0 262 5 22 35 0 0 chr4 47378154 47378183 -136910479 + AT_rich Low_complexity Low_complexity 1 29 0 346 286 124 54 chr4 47379093 47379334 -136909328 + L2 LINE L2 3015 3272 0 31 26 0 0 chr4 47379629 47379667 -136908995 + AT_rich Low_complexity Low_complexity 1 38 0 244 194 15 15 chr4 47380776 47380843 -136907819 + T-rich Low_complexity Low_complexity 1 67 0 281 388 35 61 chr4 47381152 47381509 -136907153 - L2 LINE L2 -36 3236 2890 233 278 137 35 chr4 47381509 47381645 -136907017 + MIR SINE MIR 2 148 -66 199 337 47 0 chr4 47381796 47381882 -136906780 - L2 LINE L2 -588 2726 2637 218 359 60 85 chr4 47382303 47382551 -136906111 - L2 LINE L2 -17 3255 3014 319 254 0 0 chr4 47384229 47384292 -136904370 - L2 LINE L2 0 3272 3210 27 29 0 0 chr4 47384615 47384649 -136904013 + AT_rich Low_complexity Low_complexity 1 34 0 596 296 53 16 chr4 47385594 47385837 -136902825 + MIR SINE MIR 1 252 -10 21 36 0 0 chr4 47386354 47386382 -136902280 + AT_rich Low_complexity Low_complexity 1 28 0 1992 143 3 0 chr4 47386731 47387032 -136901630 + AluSg1 SINE Alu 1 302 -7 470 149 11 0 chr4 47387032 47387119 -136901543 + GA-rich Low_complexity Low_complexity 1 88 0 260 186 17 0 chr4 47387174 47387233 -136901429 + (TA)n Simple_repeat Simple_repeat 1 60 0 3794 244 79 107 chr4 47387384 47389073 -136899589 - L1 LINE L1 -1044 5102 3368 372 43 0 0 chr4 47389073 47389119 -136899543 + (TA)n Simple_repeat Simple_repeat 1 46 0 3794 244 79 107 chr4 47389119 47389157 -136899505 - L1 LINE L1 -2778 3368 3330 1684 167 0 34 chr4 47389157 47389451 -136899211 - AluSx SINE Alu -28 284 1 3794 244 79 107 chr4 47389451 47389467 -136899195 - L1 LINE L1 -2816 3330 3315 189 0 0 0 chr4 47389467 47389488 -136899174 + (TG)n Simple_repeat Simple_repeat 2 22 0 3794 244 79 107 chr4 47389488 47390240 -136898422 - L1 LINE L1 -2831 3315 2674 131 39 0 0 chr4 47390320 47390500 -136898162 + AT_rich Low_complexity Low_complexity 1 180 0 2859 234 27 31 chr4 47390500 47390817 -136897845 - L1M4c LINE L1 -4749 1897 1580 2173 118 0 7 chr4 47390817 47391121 -136897541 - AluSx SINE Alu -4 308 7 2859 234 27 31 chr4 47391121 47391851 -136896811 - L1M4c LINE L1 -5066 1580 845 684 228 56 43 chr4 47391899 47392132 -136896530 + MER46A DNA MER2_type 1 236 0 186 43 0 0 chr4 47392173 47392196 -136896466 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4238 219 32 23 chr4 47392201 47393442 -136895220 + L1MA7 LINE L1 5039 6291 0 298 273 11 11 chr4 47394994 47395082 -136893580 + MIR SINE MIR 121 208 -54 187 283 38 0 chr4 47396005 47396058 -136892604 + L2 LINE L2 2927 2981 -291 370 287 9 19 chr4 47396094 47396202 -136892460 - L2 LINE L2 -5 3308 3202 28 0 0 0 chr4 47396430 47396458 -136892204 + AT_rich Low_complexity Low_complexity 1 28 0 366 365 95 32 chr4 47396529 47397006 -136891656 - L2 LINE L2 -1 3271 2737 1185 81 6 0 chr4 47397006 47397167 -136891495 - L1PA7 LINE L1 -7 6147 5986 366 365 95 32 chr4 47397167 47397230 -136891432 - L2 LINE L2 -535 2737 2679 681 196 76 31 chr4 47397252 47397477 -136891185 - L1MCa LINE L1 -4926 1500 1266 240 35 0 0 chr4 47397484 47397513 -136891149 + (TG)n Simple_repeat Simple_repeat 2 30 0 528 59 0 0 chr4 47397572 47397640 -136891022 + (TA)n Simple_repeat Simple_repeat 2 69 0 349 323 73 24 chr4 47397836 47398000 -136890662 - MLT1J LTR MaLR -144 367 196 703 319 10 5 chr4 47398233 47398437 -136890225 - MIR SINE MIR -56 206 2 279 229 96 0 chr4 47398808 47398891 -136889771 + MIR SINE MIR 101 191 -71 356 333 41 40 chr4 47400733 47400996 -136887666 + MIR SINE MIR 2 262 0 249 167 106 0 chr4 47401170 47401236 -136887426 + HSAT6 Satellite Satellite 26 98 -28 669 236 37 42 chr4 47401797 47401988 -136886674 - MER102a DNA MER1_type 0 330 141 255 344 8 24 chr4 47402387 47402512 -136886150 - MIR SINE MIR -50 212 90 33 66 0 0 chr4 47403064 47403125 -136885537 + AT_rich Low_complexity Low_complexity 1 61 0 25 0 0 0 chr4 47403598 47403623 -136885039 + AT_rich Low_complexity Low_complexity 1 25 0 2441 285 158 39 chr4 47404081 47404767 -136883895 - L2 LINE L2 0 3313 2710 1111 205 19 129 chr4 47404767 47405187 -136883475 + MLT1A2 LTR MaLR 1 374 0 2441 285 158 39 chr4 47405187 47406225 -136882437 - L2 LINE L2 -603 2710 1372 317 343 56 7 chr4 47406324 47406467 -136882195 + MLT1K LTR MaLR 114 263 -325 683 269 6 22 chr4 47406977 47407159 -136881503 - MIR SINE MIR -74 188 10 542 293 35 66 chr4 47407372 47407628 -136881034 + MLT1J LTR MaLR 230 477 -34 2317 89 0 0 chr4 47407858 47408161 -136880501 - AluY SINE Alu -8 303 1 22 0 0 0 chr4 47408211 47408233 -136880429 + AT_rich Low_complexity Low_complexity 1 22 0 43 56 0 0 chr4 47408878 47408949 -136879713 + AT_rich Low_complexity Low_complexity 1 71 0 21 57 0 0 chr4 47409271 47409306 -136879356 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr4 47409429 47409453 -136879209 + AT_rich Low_complexity Low_complexity 1 24 0 3723 226 32 20 chr4 47410056 47411362 -136877300 - L1MB5 LINE L1 -11 6163 4847 489 122 37 0 chr4 47411361 47411443 -136877219 - L1P LINE L1 -1417 4729 4645 * 305 97 0 139 chr4 47411461 47411479 -136877183 + L1 LINE L1 4515 4534 -1612 3602 12 0 0 chr4 47411479 47411891 -136876771 + L1PA3 LINE L1 5744 6155 0 305 97 0 139 chr4 47411891 47411918 -136876744 + L1 LINE L1 4534 4549 -1597 2222 152 5 19 chr4 47411918 47412287 -136876375 - THE1B LTR MaLR 0 364 1 305 97 0 139 chr4 47412287 47412312 -136876350 + L1 LINE L1 4549 4576 -1570 1041 178 0 0 chr4 47412315 47412506 -136876156 - L1P LINE L1 -1752 4394 4204 5751 111 21 1 chr4 47412506 47413807 -136874855 + L1PA13 LINE L1 4833 6153 -10 1893 244 13 42 chr4 47413821 47413978 -136874684 - L1MB5 LINE L1 -1287 4859 4699 279 0 0 0 chr4 47413978 47414009 -136874653 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2064 62 41 17 chr4 47414012 47414302 -136874360 - AluY SINE Alu -14 297 1 1893 244 13 42 chr4 47414302 47414762 -136873900 - L1MB5 LINE L1 -1449 4697 4256 1273 261 33 4 chr4 47414973 47415428 -136873234 - L1MB5 LINE L1 -2277 3869 3402 2911 119 25 5 chr4 47415476 47415874 -136872788 + MLT2A2 LTR ERVL 1 410 -43 312 91 0 0 chr4 47415874 47415918 -136872744 + (TA)n Simple_repeat Simple_repeat 2 45 0 2911 119 25 5 chr4 47415918 47415963 -136872699 + MLT2A2 LTR ERVL 410 453 0 4636 108 0 1 chr4 47415963 47416611 -136872051 + HERVL-A2-A2 LTR ERVL 1 647 -5007 33665 91 19 4 chr4 47416611 47421183 -136867479 + HERVL-A2-A2 LTR ERVL 1017 5654 0 2947 87 13 3 chr4 47421183 47421574 -136867088 + MLT2A2 LTR ERVL 1 395 -58 360 0 0 0 chr4 47421574 47421614 -136867048 + (TA)n Simple_repeat Simple_repeat 2 41 0 1841 253 51 8 chr4 47421695 47422327 -136866335 - L1MB5 LINE L1 -2835 3311 2653 24 96 0 0 chr4 47423074 47423147 -136865515 + AT_rich Low_complexity Low_complexity 1 73 0 22 70 0 0 chr4 47423326 47423369 -136865293 + AT_rich Low_complexity Low_complexity 1 43 0 204 171 24 0 chr4 47424135 47424176 -136864486 + (TAA)n Simple_repeat Simple_repeat 1 42 0 1071 217 21 69 chr4 47425094 47425426 -136863236 + L1MA10 LINE L1 6019 6334 0 201 328 0 0 chr4 47425432 47425493 -136863169 - MIR SINE MIR -8 254 194 372 367 63 38 chr4 47425495 47425994 -136862668 + L2 LINE L2 2732 3272 0 1575 174 31 0 chr4 47426158 47426445 -136862217 - AluJo SINE Alu -4 308 13 21 0 0 0 chr4 47427800 47427821 -136860841 + AT_rich Low_complexity Low_complexity 1 21 0 1101 193 16 49 chr4 47427936 47428180 -136860482 - MER46A DNA MER2_type 0 236 1 211 208 0 0 chr4 47428555 47428608 -136860054 + T-rich Low_complexity Low_complexity 1 53 0 2312 74 10 0 chr4 47428745 47429041 -136859621 + AluSc SINE Alu 1 299 -10 329 247 213 53 chr4 47429120 47429222 -136859440 - MER5A DNA MER1_type 0 189 105 2505 30 7 0 chr4 47429222 47429522 -136859140 + L1PA4 LINE L1 5854 6155 0 329 247 213 53 chr4 47429522 47429569 -136859093 - MER5A DNA MER1_type -84 105 16 183 129 0 0 chr4 47431180 47431211 -136857451 + (TATATG)n Simple_repeat Simple_repeat 3 33 0 247 273 61 0 chr4 47431663 47431729 -136856933 + L2 LINE L2 3171 3240 -32 21 0 0 0 chr4 47434553 47434574 -136854088 + AT_rich Low_complexity Low_complexity 1 21 0 283 176 54 14 chr4 47435717 47435791 -136852871 + MER116 DNA Mariner 3 79 -1 1972 135 0 0 chr4 47435914 47436202 -136852460 + AluSx SINE Alu 1 288 -24 387 0 0 0 chr4 47437214 47437257 -136851405 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 282 217 0 0 chr4 47437263 47437332 -136851330 + A-rich Low_complexity Low_complexity 1 69 0 270 125 0 0 chr4 47437659 47437707 -136850955 + (TC)n Simple_repeat Simple_repeat 2 49 0 24 32 0 0 chr4 47438564 47438595 -136850067 + AT_rich Low_complexity Low_complexity 1 31 0 5299 130 31 13 chr4 47438596 47439472 -136849190 - L1PA16 LINE L1 -10 6156 5265 411 345 56 35 chr4 47439923 47440033 -136848629 - L1ME3A LINE L1 -233 5937 5831 216 97 0 0 chr4 47440033 47440064 -136848598 + (CA)n Simple_repeat Simple_repeat 2 32 0 411 345 56 35 chr4 47440064 47440327 -136848335 - L1ME3A LINE L1 -339 5831 5684 1036 263 9 0 chr4 47440367 47440584 -136848078 - MER58A DNA MER1_type 0 224 6 266 328 97 18 chr4 47440588 47440920 -136847742 - L1ME3A LINE L1 -597 5569 5299 1149 302 149 12 chr4 47441410 47442068 -136846594 + Charlie7 DNA MER1_type 1 748 -1864 262 272 0 25 chr4 47442075 47442156 -136846506 + Charlie7 DNA MER1_type 2108 2186 -426 32 26 0 0 chr4 47442223 47442262 -136846400 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr4 47442353 47442378 -136846284 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr4 47442392 47442415 -136846247 + AT_rich Low_complexity Low_complexity 1 23 0 229 359 103 0 chr4 47443009 47443126 -136845536 - MIR3 SINE MIR -37 171 43 21 0 0 0 chr4 47443900 47443921 -136844741 + AT_rich Low_complexity Low_complexity 1 21 0 3561 205 107 19 chr4 47444284 47445580 -136843082 + L1MA9 LINE L1 4888 6274 -38 531 283 7 7 chr4 47445703 47445855 -136842807 + MIR SINE MIR 86 237 -25 256 349 28 28 chr4 47446719 47446825 -136841837 + L2 LINE L2 3208 3313 0 37 62 0 0 chr4 47447071 47447136 -136841526 + AT_rich Low_complexity Low_complexity 1 65 0 196 365 19 0 chr4 47447969 47448073 -136840589 - L2 LINE L2 -287 2985 2880 302 332 141 10 chr4 47448073 47448386 -136840276 + L2 LINE L2 1690 2043 -1271 4729 155 26 14 chr4 47448662 47450237 -136838425 - L1PA16 LINE L1 0 6166 4591 698 289 138 52 chr4 47450675 47451218 -136837444 + L2 LINE L2 2065 2654 -660 267 152 0 0 chr4 47452368 47452414 -136836248 + (TG)n Simple_repeat Simple_repeat 2 47 0 1061 23 0 8 chr4 47452722 47452852 -136835810 - L1PA2 LINE L1 0 6155 6027 648 232 11 74 chr4 47453264 47453454 -136835208 + LTR41 LTR ERVL 6 183 -590 402 74 0 0 chr4 47454641 47454695 -136833967 + (TA)n Simple_repeat Simple_repeat 1 54 0 243 0 0 0 chr4 47454694 47454721 -136833941 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 1451 199 44 4 chr4 47455862 47456133 -136832529 - AluJb SINE Alu -30 282 1 23 33 0 0 chr4 47456456 47456486 -136832176 + AT_rich Low_complexity Low_complexity 1 30 0 516 282 84 20 chr4 47457784 47457986 -136830676 - MIR SINE MIR -18 244 30 23 0 0 0 chr4 47458201 47458224 -136830438 + AT_rich Low_complexity Low_complexity 1 23 0 605 247 46 23 chr4 47458252 47458426 -136830236 + MER45A DNA AcHobo 1 178 0 273 257 14 0 chr4 47459234 47459304 -136829358 + GA-rich Low_complexity Low_complexity 4 74 0 2239 109 10 0 chr4 47459579 47459881 -136828781 - AluSq SINE Alu -8 305 1 436 308 111 57 chr4 47459898 47460285 -136828377 + L2 LINE L2 2906 3313 0 198 0 0 0 chr4 47461761 47461783 -136826879 + (A)n Simple_repeat Simple_repeat 1 22 0 186 43 0 0 chr4 47463164 47463187 -136825475 + (TGAG)n Simple_repeat Simple_repeat 1 23 0 654 192 99 29 chr4 47463293 47463465 -136825197 - MER3 DNA MER1_type -13 196 13 328 312 65 14 chr4 47463472 47463610 -136825052 + L2 LINE L2 3169 3313 0 226 236 31 79 chr4 47463635 47463762 -136824900 - L2 LINE L2 -81 3232 3112 994 317 205 0 chr4 47463765 47464288 -136824374 + L2 LINE L2 1989 2618 -696 1127 203 27 4 chr4 47464326 47464587 -136824075 - L1MB7 LINE L1 -5 6179 5913 840 241 25 0 chr4 47464594 47464835 -136823827 - L1M4 LINE L1 -2163 4481 4235 * 4535 236 68 52 chr4 47464829 47466468 -136822194 - L1M4 LINE L1 -4863 1679 16 435 282 81 79 chr4 47466489 47466766 -136821896 + L2 LINE L2 2697 3005 -308 1507 192 0 48 chr4 47466771 47467084 -136821578 - AluJo SINE Alu -14 298 1 227 274 14 0 chr4 47467098 47467171 -136821491 - MIR SINE MIR -5 257 184 * 350 358 53 43 chr4 47467162 47467464 -136821198 + L2 LINE L2 3004 3308 -5 327 269 134 27 chr4 47467760 47467909 -136820753 + MIR SINE MIR 68 232 -30 433 276 96 0 chr4 47468015 47468171 -136820491 + MIR SINE MIR 92 262 0 324 311 104 81 chr4 47468258 47468924 -136819738 - L2 LINE L2 -1192 2122 1442 2125 138 47 14 chr4 47469070 47469433 -136819229 + THE1C LTR MaLR 1 375 0 903 301 125 11 chr4 47469523 47469875 -136818787 + LTR16C LTR ERVL 86 477 -14 187 77 0 77 chr4 47470696 47470761 -136817901 + (TTTA)n Simple_repeat Simple_repeat 3 62 0 5375 203 42 5 chr4 47470841 47472046 -136816616 + L1 LINE L1 4071 5320 -826 7591 30 0 0 chr4 47472046 47473057 -136815605 + L1PA4 LINE L1 5142 6152 -3 1935 149 40 0 chr4 47473067 47473395 -136815267 + Tigger1 DNA MER2_type 2078 2418 0 253 206 16 24 chr4 47474546 47474672 -136813990 + (TA)n Simple_repeat Simple_repeat 1 125 0 217 205 0 84 chr4 47477028 47477111 -136811551 + CT-rich Low_complexity Low_complexity 3 78 0 8496 44 0 5 chr4 47477234 47478312 -136810350 - L1P LINE L1 -1362 4784 3712 211 303 142 25 chr4 47478435 47478597 -136810065 + L2 LINE L2 1895 2075 -1239 1509 197 3 31 chr4 47478854 47479167 -136809495 - AluJo SINE Alu 0 305 1 218 302 120 57 chr4 47479185 47479553 -136809109 + L2 LINE L2 2551 2941 -373 327 188 0 16 chr4 47479828 47479892 -136808770 + MIR SINE MIR 86 148 -114 468 235 139 67 chr4 47480402 47480787 -136807875 + MLT1J2 LTR MaLR 75 450 0 320 276 18 74 chr4 47480809 47480972 -136807690 - L2 LINE L2 -5 3308 3155 666 319 55 4 chr4 47481101 47481336 -136807326 - MIR SINE MIR -14 248 2 226 52 69 17 chr4 47484028 47484086 -136804576 + T-rich Low_complexity Low_complexity 4 64 0 404 296 0 0 chr4 47484486 47484584 -136804078 + MIR SINE MIR 34 131 -131 538 198 18 9 chr4 47484585 47484696 -136803966 - L2 LINE L2 -2 3311 3200 2216 105 16 0 chr4 47484704 47485008 -136803654 - AluSc SINE Alu 0 309 1 213 253 69 46 chr4 47485071 47485158 -136803504 + MIR SINE MIR 165 253 -9 2062 86 0 0 chr4 47486732 47486989 -136801673 + AluY SINE Alu 47 303 -8 432 188 30 0 chr4 47487186 47487287 -136801375 + L1MA10 LINE L1 6205 6308 -26 2292 138 5 19 chr4 47487287 47487656 -136801006 + THE1B LTR MaLR 1 364 0 10892 109 14 2 chr4 47487656 47489217 -136799445 + THE1B-int LTR MaLR 1 1580 0 1851 136 7 55 chr4 47489235 47489544 -136799118 + THE1B LTR MaLR 71 364 0 232 306 14 28 chr4 47489883 47489955 -136798707 - L2 LINE L2 -4 3309 3239 544 326 59 5 chr4 47491165 47491386 -136797276 + MIR SINE MIR 19 251 -11 1839 213 152 18 chr4 47491416 47491990 -136796672 - MLT1E2 LTR MaLR -5 621 2 416 362 33 21 chr4 47492602 47492845 -136795817 - MIR SINE MIR -16 246 1 331 330 84 21 chr4 47493556 47493747 -136794915 + MIR SINE MIR 22 224 -38 196 278 93 0 chr4 47494415 47494469 -136794193 - L2 LINE L2 -48 3224 3166 1087 271 21 51 chr4 47494880 47495216 -136793446 + MLT1I LTR MaLR 1 326 -83 208 318 136 15 chr4 47495525 47495657 -136793005 + MER5A DNA MER1_type 14 161 -28 477 288 96 45 chr4 47495691 47496004 -136792658 + MER102a DNA MER1_type 1 329 -1 299 295 36 22 chr4 47496248 47496387 -136792275 - Charlie8 DNA MER1_type -2160 257 117 203 327 0 0 chr4 47496907 47496959 -136791703 - L2 LINE L2 -254 3059 3008 231 335 64 27 chr4 47497249 47497437 -136791225 - L2 LINE L2 -1057 2257 2063 221 0 35 0 chr4 47497944 47497973 -136790689 + (CA)n Simple_repeat Simple_repeat 1 30 0 265 267 76 19 chr4 47497986 47498091 -136790571 - MIR3 SINE MIR -17 191 81 432 239 11 0 chr4 47499004 47499096 -136789566 + MER5A DNA MER1_type 11 103 -86 217 289 74 44 chr4 47499080 47499215 -136789447 - MIR SINE MIR -58 204 66 * 254 248 35 14 chr4 47499420 47499534 -136789128 + MLT1L LTR MaLR 234 430 -185 23 33 0 0 chr4 47500576 47500606 -136788056 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 47501963 47501985 -136786677 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr4 47502267 47502312 -136786350 + AT_rich Low_complexity Low_complexity 1 45 0 294 345 0 0 chr4 47502865 47502949 -136785713 + L2 LINE L2 3187 3270 -2 1589 163 26 62 chr4 47503655 47503788 -136784874 + AluJb SINE Alu 1 137 -165 6916 69 42 24 chr4 47503788 47505543 -136783119 + SVA Other Other 1 1380 -6 1589 163 26 62 chr4 47505543 47505715 -136782947 + AluJb SINE Alu 137 296 -6 522 283 78 19 chr4 47507366 47507571 -136781091 - MIR SINE MIR -1 261 45 356 274 19 28 chr4 47508564 47508670 -136779992 - MIR SINE MIR -118 144 40 850 278 63 71 chr4 47508862 47509487 -136779175 - L2 LINE L2 -6 3307 2693 415 302 83 0 chr4 47510013 47510206 -136778456 - MIR SINE MIR -12 250 43 198 243 243 20 chr4 47510909 47511057 -136777605 - MIR SINE MIR -71 191 11 279 0 0 0 chr4 47511952 47511983 -136776679 + (TA)n Simple_repeat Simple_repeat 1 31 0 38 81 0 0 chr4 47512267 47512354 -136776308 + AT_rich Low_complexity Low_complexity 1 87 0 186 133 0 0 chr4 47515093 47515123 -136773539 + (A)n Simple_repeat Simple_repeat 1 30 0 294 29 0 0 chr4 47515792 47515827 -136772835 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 234 91 0 0 chr4 47515970 47516003 -136772659 + (GGAGA)n Simple_repeat Simple_repeat 4 36 0 540 0 0 0 chr4 47516676 47516736 -136771926 + (GA)n Simple_repeat Simple_repeat 1 60 0 315 71 0 0 chr4 47516864 47516906 -136771756 + (GGA)n Simple_repeat Simple_repeat 1 42 0 246 236 24 0 chr4 47520068 47520191 -136768471 + (TA)n Simple_repeat Simple_repeat 2 127 0 601 255 163 0 chr4 47521302 47521486 -136767176 - MIR SINE MIR -43 219 6 408 40 0 0 chr4 47522161 47522211 -136766451 + (CA)n Simple_repeat Simple_repeat 1 50 0 247 292 89 74 chr4 47522230 47522432 -136766230 + L2 LINE L2 2523 2727 -587 234 191 0 0 chr4 47522555 47522602 -136766060 + (CA)n Simple_repeat Simple_repeat 2 48 0 1568 191 96 6 chr4 47522915 47523250 -136765412 - MLT1A1 LTR MaLR 0 365 1 2006 186 66 10 chr4 47523393 47523802 -136764860 + MSTB1 LTR MaLR 1 432 0 532 340 97 0 chr4 47523861 47524067 -136764595 + MIR SINE MIR 16 241 -21 811 316 31 28 chr4 47525116 47525508 -136763154 + MLT1I LTR MaLR 10 402 -7 219 253 187 22 chr4 47526323 47526414 -136762248 + L2 LINE L2 3199 3304 -9 427 333 54 93 chr4 47526495 47527148 -136761514 + L2 LINE L2 2620 3263 -9 2114 125 3 0 chr4 47527451 47527746 -136760916 - AluSg1 SINE Alu -1 308 13 565 128 0 21 chr4 47529198 47529292 -136759370 + LTR26E LTR ERV1 1 92 -530 448 363 4 4 chr4 47529298 47529524 -136759138 - LTR26E-int LTR ERV1 -512 7608 7383 484 321 46 53 chr4 47529626 47530171 -136758491 - LTR26E-int LTR ERV1 -1964 5826 4822 1077 344 36 35 chr4 47530481 47531395 -136757267 - LTR26E-int LTR ERV1 -2837 4285 3510 210 143 0 0 chr4 47531480 47531515 -136757147 + (TA)n Simple_repeat Simple_repeat 1 35 0 596 113 0 0 chr4 47531515 47531612 -136757050 - L1MA1 LINE L1 0 6302 6206 33406 107 11 8 chr4 47531656 47537779 -136750883 + L1PA6 LINE L1 11 6154 0 569 338 48 35 chr4 47537790 47538455 -136750207 - LTR26E-int LTR ERV1 -3855 3267 2654 384 333 5 42 chr4 47540518 47540710 -136747952 - LTR26E-int LTR ERV1 -4977 969 785 297 350 38 31 chr4 47541098 47541258 -136747404 - LTR26E-int LTR ERV1 -6067 196 36 2884 174 45 11 chr4 47541297 47541870 -136746792 - LTR26E LTR ERV1 0 622 30 602 164 10 0 chr4 47541870 47541974 -136746688 - AluSg/x SINE Alu -8 304 200 1422 206 24 45 chr4 47542926 47543078 -136745584 - AluJo SINE Alu -26 286 141 2278 85 0 7 chr4 47543078 47543371 -136745291 - AluY SINE Alu -20 291 1 1422 206 24 45 chr4 47543371 47543510 -136745152 - AluJo SINE Alu -171 141 1 416 321 61 38 chr4 47544058 47544245 -136744417 - MIR SINE MIR 0 262 68 785 193 69 69 chr4 47544245 47544520 -136744142 + ORSL DNA AcHobo 1 275 0 416 321 61 38 chr4 47544520 47544544 -136744118 - MIR SINE MIR -194 68 46 228 111 0 0 chr4 47544752 47544788 -136743874 + (A)n Simple_repeat Simple_repeat 1 36 0 25 65 0 0 chr4 47545342 47545388 -136743274 + AT_rich Low_complexity Low_complexity 1 46 0 27 29 0 0 chr4 47545444 47545478 -136743184 + AT_rich Low_complexity Low_complexity 1 34 0 314 293 21 107 chr4 47545562 47545804 -136742858 + L2 LINE L2 359 579 -2735 1151 291 36 22 chr4 47545844 47545909 -136742753 + L2 LINE L2 2254 2317 -997 1600 153 206 19 chr4 47545909 47546269 -136742393 - MSTA LTR MaLR 0 428 2 1151 291 36 22 chr4 47546269 47546619 -136742043 + L2 LINE L2 2317 2675 -639 588 323 52 3 chr4 47546883 47547211 -136741451 - HAL1 LINE L1 -108 2399 2056 217 328 43 35 chr4 47547367 47547483 -136741179 + MIR SINE MIR 76 192 -70 390 254 92 22 chr4 47547839 47548024 -136740638 - L1MD3 LINE L1 -2 7993 7796 627 250 119 8 chr4 47548069 47548313 -136740349 - L1ME3A LINE L1 -57 6113 5843 2566 95 8 11 chr4 47548445 47548814 -136739848 - L1PB1 LINE L1 -2 6149 5782 351 168 34 54 chr4 47548814 47548963 -136739699 + (TA)n Simple_repeat Simple_repeat 1 146 0 7130 176 9 12 chr4 47548964 47550947 -136737715 - L1PB1 LINE L1 -361 5790 3818 290 359 71 18 chr4 47550960 47551130 -136737532 - MLT1J2 LTR MaLR -3 447 269 275 314 99 8 chr4 47551141 47551262 -136737400 - MLT1I LTR MaLR -196 213 82 272 311 0 14 chr4 47551605 47551679 -136736983 - L2 LINE L2 -1 3312 3240 24 0 0 0 chr4 47552286 47552310 -136736352 + AT_rich Low_complexity Low_complexity 1 24 0 246 343 192 0 chr4 47553406 47553604 -136735058 + MIR SINE MIR 16 251 -11 31 26 0 0 chr4 47554013 47554051 -136734611 + AT_rich Low_complexity Low_complexity 1 38 0 279 215 0 0 chr4 47554536 47554601 -136734061 + CT-rich Low_complexity Low_complexity 1 65 0 22 56 0 0 chr4 47554713 47554749 -136733913 + AT_rich Low_complexity Low_complexity 1 36 0 2045 134 0 0 chr4 47555299 47555638 -136733024 - AluSx SINE Alu 0 339 1 1136 281 82 84 chr4 47555765 47556042 -136732620 + L2 LINE L2 2037 2313 -1000 974 211 156 46 chr4 47556042 47556369 -136732293 + MLT1A1 LTR MaLR 1 363 -2 1136 281 82 84 chr4 47556369 47557347 -136731315 + L2 LINE L2 2313 3313 0 363 154 0 0 chr4 47558433 47558498 -136730164 + (CA)n Simple_repeat Simple_repeat 2 66 0 1145 184 24 0 chr4 47559244 47559494 -136729168 - L1MA9 LINE L1 0 6312 6057 611 324 101 37 chr4 47559495 47559900 -136728762 + MLT1L LTR MaLR 167 597 -18 25 0 0 0 chr4 47559947 47559972 -136728690 + AT_rich Low_complexity Low_complexity 1 25 0 273 333 78 26 chr4 47560659 47560851 -136727811 - L2 LINE L2 -500 2814 2613 3968 195 46 57 chr4 47561150 47562447 -136726215 - L1MA9 LINE L1 -42 6270 4980 456 237 94 54 chr4 47562558 47562773 -136725889 + MIR SINE MIR 39 262 0 7463 36 0 0 chr4 47563208 47564399 -136724263 - L1PA3 LINE L1 0 6155 4963 8594 32 3 1 chr4 47564401 47565433 -136723229 + L1PA3 LINE L1 3942 4975 -1171 492 220 24 70 chr4 47565873 47566097 -136722565 - MER5C DNA MER1_type -2 322 4 681 239 34 6 chr4 47566193 47566369 -136722293 - L1MB1 LINE L1 0 6168 5988 23 0 0 53 chr4 47566375 47566391 -136722271 + AT_rich Low_complexity Low_complexity 1 16 -20 2013 131 0 0 chr4 47566391 47566732 -136721930 - AluSx SINE Alu 0 341 1 23 0 0 53 chr4 47566732 47566752 -136721910 + AT_rich Low_complexity Low_complexity 16 36 0 234 0 0 0 chr4 47567018 47567044 -136721618 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 30 0 0 0 chr4 47567054 47567084 -136721578 + AT_rich Low_complexity Low_complexity 1 30 0 1433 50 0 0 chr4 47567084 47567264 -136721398 - L1PA2 LINE L1 0 6155 5976 1511 0 0 0 chr4 47567264 47567433 -136721229 + L1PA2 LINE L1 5801 5969 -186 21 36 0 0 chr4 47567770 47567798 -136720864 + AT_rich Low_complexity Low_complexity 1 28 0 3727 115 62 2 chr4 47568849 47569449 -136719213 - L1MA3 LINE L1 -7 6298 5663 492 303 46 50 chr4 47569541 47569782 -136718880 - MIR SINE MIR -3 259 20 1817 146 18 4 chr4 47570735 47571038 -136717624 + AluSx SINE Alu 1 307 0 36 40 0 0 chr4 47571219 47571269 -136717393 + AT_rich Low_complexity Low_complexity 1 50 0 247 332 96 21 chr4 47572049 47572236 -136716426 - MIR SINE MIR -56 206 6 29 0 0 0 chr4 47572362 47572391 -136716271 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr4 47572418 47572454 -136716208 + AT_rich Low_complexity Low_complexity 1 36 0 315 282 37 86 chr4 47573360 47573523 -136715139 + MIR SINE MIR 99 253 -9 23 33 0 0 chr4 47574242 47574272 -136714390 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 47574430 47574451 -136714211 + AT_rich Low_complexity Low_complexity 1 21 0 2425 74 3 6 chr4 47575926 47576238 -136712424 + AluY SINE Alu 1 311 0 22 35 0 0 chr4 47576314 47576343 -136712319 + AT_rich Low_complexity Low_complexity 1 29 0 725 189 126 15 chr4 47576429 47576503 -136712159 + L1MA9 LINE L1 6078 6142 -170 243 0 0 0 chr4 47576503 47576530 -136712132 + (CA)n Simple_repeat Simple_repeat 1 27 0 725 189 126 15 chr4 47576530 47576661 -136712001 + L1MA9 LINE L1 6142 6306 -6 2182 113 7 0 chr4 47577095 47577396 -136711266 + AluSp SINE Alu 1 303 -10 2066 106 3 0 chr4 47578481 47578765 -136709897 + AluSp SINE Alu 1 285 -28 23 54 0 0 chr4 47579038 47579075 -136709587 + AT_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chr4 47579825 47579858 -136708804 + AT_rich Low_complexity Low_complexity 1 33 0 452 327 6 42 chr4 47580814 47580982 -136707680 - MLT1J2 LTR MaLR -269 181 20 26 30 0 0 chr4 47581883 47581916 -136706746 + AT_rich Low_complexity Low_complexity 1 33 0 560 341 54 42 chr4 47581984 47582482 -136706180 + L1M3b LINE L1 1216 1719 -5777 5341 224 50 33 chr4 47582940 47585844 -136702818 + L1M3b LINE L1 2097 4943 -2622 2190 128 0 0 chr4 47585848 47586154 -136702508 + AluSx SINE Alu 6 311 -1 23 0 0 0 chr4 47686468 47686491 -136602171 + AT_rich Low_complexity Low_complexity 1 23 0 2085 121 17 0 chr4 47686495 47686792 -136601870 + AluSx SINE Alu 1 302 -10 2472 76 0 0 chr4 47687792 47688095 -136600567 - AluY SINE Alu -8 303 1 1440 157 21 0 chr4 47688984 47689265 -136599397 + L1MA4 LINE L1 6008 6294 -6 2296 100 3 3 chr4 47690509 47690818 -136597844 + AluSp SINE Alu 1 309 -4 1726 63 5 0 chr4 47691233 47691456 -136597206 - L1PA7 LINE L1 -5 6149 5926 625 308 85 5 chr4 47691653 47691864 -136596798 - MIR SINE MIR -18 244 17 183 350 41 16 chr4 47693877 47694000 -136594662 - MIR SINE MIR -65 143 18 4140 179 47 22 chr4 47694188 47694671 -136593991 + L1MA9 LINE L1 5301 5819 -493 213 39 0 0 chr4 47694671 47694697 -136593965 + (CA)n Simple_repeat Simple_repeat 1 26 0 4140 179 47 22 chr4 47694697 47695125 -136593537 + L1MA9 LINE L1 5819 6235 -77 198 143 0 0 chr4 47695137 47695172 -136593490 + (TA)n Simple_repeat Simple_repeat 2 36 0 958 314 49 17 chr4 47695211 47695622 -136593040 - MLT1J LTR MaLR -37 474 51 739 170 14 41 chr4 47695766 47695913 -136592749 - FRAM SINE Alu -1 175 33 480 158 0 0 chr4 47695974 47696050 -136592612 - AluJo SINE Alu -15 297 222 * 726 134 8 39 chr4 47696048 47696175 -136592487 - AluJo SINE Alu -169 143 21 2656 194 18 24 chr4 47696599 47697381 -136591281 - L1P LINE L1 -1985 4161 3205 2482 4 0 0 chr4 47697381 47697659 -136591003 + L1HS LINE L1 5878 6155 0 1125 132 4 101 chr4 47697771 47698044 -136590618 - MER4A LTR ERV1 -99 565 261 1252 128 230 25 chr4 47698060 47698315 -136590347 + AluSx SINE Alu 1 303 0 498 116 93 0 chr4 47698316 47698402 -136590260 - MER4A LTR ERV1 -570 94 1 4320 195 14 6 chr4 47698403 47699314 -136589348 - L1P LINE L1 -3023 3123 2205 21 0 0 0 chr4 47699383 47699404 -136589258 + AT_rich Low_complexity Low_complexity 1 21 0 1695 149 0 86 chr4 47700033 47700369 -136588293 + AluJb SINE Alu 1 307 -5 255 271 0 14 chr4 47700647 47700717 -136587945 - MIR SINE MIR -108 154 86 784 201 6 13 chr4 47700775 47700934 -136587728 - FRAM SINE Alu -17 159 2 239 217 63 42 chr4 47701473 47701616 -136587046 - L1M LINE L1 -759 5405 5260 349 279 130 65 chr4 47701620 47701928 -136586734 - L1M4 LINE L1 -891 5255 4928 3481 141 29 20 chr4 47702003 47702600 -136586062 - MER7C DNA MER2_type 0 602 1 1533 134 0 0 chr4 47703029 47703253 -136585409 - AluSg/x SINE Alu -3 307 84 2337 231 16 46 chr4 47703838 47704405 -136584257 - MLT2B3 LTR ERVL 0 554 5 207 0 0 0 chr4 47705670 47705693 -136582969 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 304 385 159 13 chr4 47705695 47705921 -136582741 - L2 LINE L2 -38 3234 2976 449 299 111 18 chr4 47706197 47706414 -136582248 - MIR SINE MIR -13 249 13 21 0 0 0 chr4 47706796 47706817 -136581845 + AT_rich Low_complexity Low_complexity 1 21 0 660 293 67 38 chr4 47708130 47708369 -136580293 + MIR SINE MIR 17 262 0 470 214 26 26 chr4 47708948 47709065 -136579597 - L2 LINE L2 -3 3310 3194 1586 116 0 22 chr4 47709265 47709489 -136579173 + AluSg/x SINE Alu 82 300 -10 448 167 114 53 chr4 47709865 47709979 -136578683 - L2 LINE L2 0 3313 3193 270 364 82 29 chr4 47710193 47710509 -136578153 + L2 LINE L2 2555 2887 -427 470 175 9 35 chr4 47710641 47710755 -136577907 - L1MA4A LINE L1 -4 6299 6189 1018 434 3 9 chr4 47710791 47711107 -136577555 + L1MA9 LINE L1 5963 6276 -36 616 276 111 12 chr4 47711159 47711402 -136577260 + LTR16C LTR ERVL 225 491 0 203 344 69 91 chr4 47711408 47711815 -136576847 + L2 LINE L2 2871 3268 -4 310 284 0 0 chr4 47713515 47713582 -136575080 + L2 LINE L2 3247 3313 0 22 0 0 0 chr4 47713749 47713771 -136574891 + AT_rich Low_complexity Low_complexity 1 22 0 310 215 0 19 chr4 47714354 47714461 -136574201 + GA-rich Low_complexity Low_complexity 1 105 0 500 218 127 57 chr4 47714623 47714852 -136573810 - MLT1G1 LTR MaLR -4 591 347 1942 177 41 5 chr4 47718085 47718467 -136570195 - L1MB4 LINE L1 0 6180 5778 408 55 0 0 chr4 47718467 47718522 -136570140 + (TG)n Simple_repeat Simple_repeat 2 56 0 1942 177 41 5 chr4 47718522 47718580 -136570082 - L1MB4 LINE L1 -402 5778 5724 6097 157 37 33 chr4 47718833 47720055 -136568607 + Tigger3b DNA MER2_type 4 1230 -1 723 264 148 42 chr4 47720462 47720848 -136567814 - L1MB4 LINE L1 -2084 5724 5298 275 278 37 56 chr4 47721492 47721654 -136567008 - L1MB4 LINE L1 -1481 4665 4507 2268 167 28 26 chr4 47722502 47722582 -136566080 - MSTB LTR MaLR 0 426 348 2339 88 3 0 chr4 47722582 47722878 -136565784 + AluSp SINE Alu 5 301 -12 2268 167 28 26 chr4 47722878 47723222 -136565440 - MSTB LTR MaLR -78 348 1 7019 118 62 52 chr4 47723374 47724653 -136564009 - pTR5 LTR ERV1 -143 2295 1005 1829 178 32 87 chr4 47725385 47725741 -136562921 - MLT2D LTR ERVL 0 414 85 2593 52 0 0 chr4 47725741 47726048 -136562614 + AluY SINE Alu 1 307 -4 1829 178 32 87 chr4 47726048 47726129 -136562533 - MLT2D LTR ERVL -329 85 1 637 263 93 78 chr4 47726197 47726741 -136561921 + MLT1H1 LTR MaLR 7 537 -5 543 239 81 29 chr4 47727036 47727245 -136561417 - LTR45 LTR ERV1 -2 523 304 290 225 0 14 chr4 47727272 47727343 -136561319 - MER72 LTR ERV1 -243 479 410 450 320 75 3 chr4 47727560 47727882 -136560780 - L1ME3 LINE L1 -265 5897 5553 2292 85 0 7 chr4 47728427 47728732 -136559930 - AluY SINE Alu -8 303 1 27 29 0 0 chr4 47728882 47728916 -136559746 + AT_rich Low_complexity Low_complexity 1 34 0 1638 158 4 7 chr4 47729122 47729394 -136559268 + L1MA10 LINE L1 5519 5789 -523 219 216 0 0 chr4 47729394 47729431 -136559231 + (TG)n Simple_repeat Simple_repeat 2 38 0 259 204 0 0 chr4 47729431 47729485 -136559177 - L1MC4 LINE L1 -1339 6703 6650 * 1116 220 64 105 chr4 47729456 47729988 -136558674 + L1MA10 LINE L1 5782 6291 -43 1380 197 11 25 chr4 47731527 47731811 -136556851 + AluJo SINE Alu 9 288 -24 326 320 33 8 chr4 47731998 47732120 -136556542 - L2 LINE L2 -5 3267 3143 411 38 0 0 chr4 47732646 47732699 -136555963 + (TC)n Simple_repeat Simple_repeat 1 53 0 198 0 0 0 chr4 47732698 47732720 -136555942 + (CA)n Simple_repeat Simple_repeat 1 22 0 * 214 175 0 0 chr4 47734386 47734426 -136554236 + (TCTG)n Simple_repeat Simple_repeat 4 43 0 251 299 47 56 chr4 47735065 47735172 -136553490 - L2 LINE L2 -35 3237 3132 220 286 0 29 chr4 47735254 47735324 -136553338 - L2 LINE L2 -70 3243 3176 1325 176 10 35 chr4 47735475 47735788 -136552874 - pTR5 LTR ERV1 -1374 1064 760 734 241 83 32 chr4 47735788 47736041 -136552621 + MLT1J1 LTR MaLR 181 446 0 2403 93 0 0 chr4 47736310 47736620 -136552042 - AluSg SINE Alu 0 310 1 207 294 43 43 chr4 47736967 47737059 -136551603 + L2 LINE L2 3002 3093 -220 391 314 68 8 chr4 47738164 47738282 -136550380 - MIR SINE MIR -63 145 21 2174 96 10 23 chr4 47738340 47738643 -136550019 - AluSx SINE Alu -13 299 1 207 0 0 0 chr4 47739402 47739425 -136549237 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 779 327 64 55 chr4 47741137 47742033 -136546629 - L2 LINE L2 0 3313 2392 2153 276 184 35 chr4 47742039 47743434 -136545228 - L2 LINE L2 -94 3219 1609 185 0 40 0 chr4 47743591 47743616 -136545046 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 26 30 0 0 chr4 47744323 47744356 -136544306 + AT_rich Low_complexity Low_complexity 1 33 0 300 284 108 51 chr4 47744366 47744951 -136543711 - L1MC4a LINE L1 -300 5870 5289 236 195 0 0 chr4 47746088 47746129 -136542533 - L2 LINE L2 -17 3255 3215 480 288 146 26 chr4 47746349 47746582 -136542080 + MIR SINE MIR 1 261 -1 644 315 31 23 chr4 47746639 47746896 -136541766 + L2 LINE L2 2543 2801 -513 2039 164 40 24 chr4 47746970 47747347 -136541315 - MLT1B LTR MaLR -7 383 1 315 341 0 7 chr4 47747533 47747671 -136540991 + L2 LINE L2 2838 2974 -339 2334 76 3 7 chr4 47748030 47748331 -136540331 + AluY SINE Alu 1 300 -11 1982 68 0 0 chr4 47750812 47751064 -136537598 + L1PA5 LINE L1 5902 6153 -1 722 273 88 4 chr4 47751065 47751124 -136537538 - MIR SINE MIR 0 262 209 6220 57 6 1 chr4 47751124 47751909 -136536753 + L1PA7 LINE L1 5362 6150 -4 722 273 88 4 chr4 47751909 47752087 -136536575 - MIR SINE MIR -53 209 5 513 198 0 0 chr4 47752151 47752237 -136536425 - MER66B LTR ERV1 0 486 401 7118 184 17 14 chr4 47752247 47754549 -136534113 - L1PA14 LINE L1 0 6161 3841 10675 199 16 9 chr4 47754550 47757049 -136531613 + L1PA14 LINE L1 2765 5279 -2305 753 255 140 25 chr4 47757051 47757363 -136531299 - MER66A LTR ERV1 -105 373 97 10020 173 23 32 chr4 47757409 47759274 -136529388 - MER66A-int LTR ERV1 0 6676 4828 2617 162 22 12 chr4 47759274 47759769 -136528893 + L1PB3 LINE L1 5650 6149 -5 2194 56 30 0 chr4 47759794 47760097 -136528565 + AluY SINE Alu 3 313 0 1183 226 4 12 chr4 47760382 47760705 -136527957 - MER66A-int LTR ERV1 -1580 6176 4608 481 165 51 0 chr4 47760706 47760785 -136527877 - MER4B LTR ERV1 -449 161 79 569 216 0 9 chr4 47760788 47760904 -136527758 - MER66A-int LTR ERV1 -2243 4433 4319 2272 161 20 16 chr4 47761014 47761842 -136526820 - MER66A-int LTR ERV1 -529 4351 1199 2228 129 55 32 chr4 47761844 47762278 -136526384 - MER4B-int LTR ERV1 -218 1568 1125 519 278 10 76 chr4 47762287 47762485 -136526177 - MER66A-int LTR ERV1 -3574 3102 2918 6088 223 60 67 chr4 47762487 47764373 -136524289 - MER66A-int LTR ERV1 -4803 1873 1 1485 220 104 22 chr4 47764374 47764795 -136523867 - MER66A LTR ERV1 -1 521 97 397 292 16 22 chr4 47764953 47765100 -136523562 - MIR SINE MIR -46 162 20 1782 154 11 7 chr4 47766058 47766338 -136522324 + AluSx SINE Alu 1 281 -31 245 295 115 39 chr4 47766874 47767030 -136521632 - MIR3 SINE MIR -5 203 36 23 0 0 0 chr4 47767044 47767067 -136521595 + AT_rich Low_complexity Low_complexity 1 23 0 589 294 28 0 chr4 47767168 47767345 -136521317 - MIR SINE MIR -73 189 8 35 78 0 10 chr4 47767866 47767926 -136520736 + AT_rich Low_complexity Low_complexity 1 61 -40 1874 101 8 0 chr4 47767926 47768173 -136520489 - AluSx SINE Alu -63 249 1 35 78 0 10 chr4 47768173 47768214 -136520448 + AT_rich Low_complexity Low_complexity 61 101 0 289 268 78 11 chr4 47768361 47768540 -136520122 - L1ME4a LINE L1 -240 5881 5691 191 267 228 10 chr4 47768583 47768684 -136519978 - L2 LINE L2 0 3313 3191 311 155 70 36 chr4 47768686 47768816 -136519846 + MER3 DNA MER1_type 1 203 -6 1345 233 37 79 chr4 47769432 47769985 -136518677 + L1MC4a LINE L1 6098 6601 -1184 2780 217 60 13 chr4 47769985 47770106 -136518556 + MER82 DNA MER2_type 1 115 -538 198 0 0 0 chr4 47770106 47770128 -136518534 + (CAAT)n Simple_repeat Simple_repeat 3 24 0 2780 217 60 13 chr4 47770128 47770624 -136518038 + MER82 DNA MER2_type 115 647 -6 261 57 0 0 chr4 47770630 47770665 -136517997 + (TG)n Simple_repeat Simple_repeat 2 36 0 3872 237 67 19 chr4 47770669 47771813 -136516849 + L1MC4a LINE L1 6609 7807 -1 338 226 19 0 chr4 47772949 47773055 -136515607 + (TTAAA)n Simple_repeat Simple_repeat 1 108 0 1534 47 0 0 chr4 47773339 47773530 -136515132 + L1PA4 LINE L1 5961 6151 -4 207 310 145 28 chr4 47773699 47773844 -136514818 - L2 LINE L2 -10 3303 3142 201 356 10 10 chr4 47774058 47774083 -136514579 + (TATATG)n Simple_repeat Simple_repeat 3 27 -79 1749 184 33 0 chr4 47774083 47774415 -136514247 - MER2 DNA MER2_type -1 343 1 201 356 10 10 chr4 47774415 47774493 -136514169 + (TATATG)n Simple_repeat Simple_repeat 26 106 0 226 162 0 0 chr4 47774592 47774629 -136514033 + L2 LINE L2 3277 3313 0 362 250 10 20 chr4 47775471 47775571 -136513091 + L2 LINE L2 2035 2133 -1181 1105 246 50 53 chr4 47775577 47776082 -136512580 - MLT1E LTR MaLR -3 590 8 531 229 207 38 chr4 47776088 47776402 -136512260 + L2 LINE L2 2131 2497 -817 2238 223 94 37 chr4 47777008 47777026 -136511636 + LTR68 LTR ERV1 1 17 -723 1770 167 66 14 chr4 47777026 47777373 -136511289 - MLT1A1 LTR MaLR 0 365 1 2238 223 94 37 chr4 47777373 47778054 -136510608 + LTR68 LTR ERV1 17 740 0 205 305 0 0 chr4 47778089 47778148 -136510514 + MIR SINE MIR 203 261 -1 221 169 15 108 chr4 47778962 47779027 -136509635 - L2 LINE L2 -67 3246 3188 1847 153 0 24 chr4 47779236 47779531 -136509131 + AluJo SINE Alu 3 290 -22 274 321 109 53 chr4 47779583 47779923 -136508739 - L2 LINE L2 -769 2545 2187 495 223 126 28 chr4 47782246 47782308 -136506354 - MER69 DNA AcHobo -171 2355 2300 5441 133 40 6 chr4 47782308 47784104 -136504558 - L1PA14 LINE L1 -9 6152 4331 495 223 126 28 chr4 47784104 47784288 -136504374 - MER69 DNA AcHobo -226 2300 2085 253 354 111 0 chr4 47784441 47784540 -136504122 - L2 LINE L2 -15 3257 3148 430 229 59 33 chr4 47784677 47784830 -136503832 - MER103 DNA DNA -2 164 8 2061 114 80 17 chr4 47784830 47785182 -136503480 - THE1C LTR MaLR 0 375 2 1826 291 182 20 chr4 47786431 47787560 -136501102 + L2 LINE L2 1990 3313 0 308 318 19 39 chr4 47787991 47788145 -136500517 - L1ME4a LINE L1 0 6121 5971 31 26 0 0 chr4 47788799 47788837 -136499825 + AT_rich Low_complexity Low_complexity 1 38 0 1304 80 11 0 chr4 47788837 47789013 -136499649 - L1MA2 LINE L1 -8 6296 6119 2439 70 0 10 chr4 47789213 47789525 -136499137 + AluY SINE Alu 1 309 -2 288 0 0 0 chr4 47791523 47791555 -136497107 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 49 32 0 0 chr4 47792071 47792134 -136496528 + AT_rich Low_complexity Low_complexity 1 63 0 402 173 0 0 chr4 47792547 47792622 -136496040 + (TG)n Simple_repeat Simple_repeat 2 76 0 24 32 0 0 chr4 47793637 47793668 -136494994 + AT_rich Low_complexity Low_complexity 1 31 0 234 211 40 66 chr4 47793785 47793861 -136494801 - L2 LINE L2 -6 3266 3193 727 260 151 5 chr4 47794710 47794929 -136493733 + MIR SINE MIR 12 262 0 2278 90 7 3 chr4 47795081 47795380 -136493282 + AluSq SINE Alu 1 300 -13 228 336 109 29 chr4 47795445 47795582 -136493080 - MIR3 SINE MIR -25 183 36 604 280 36 27 chr4 47795639 47795864 -136492798 + MIR SINE MIR 32 258 -4 224 329 0 0 chr4 47796509 47796579 -136492083 - L2 LINE L2 -1015 2299 2230 298 319 50 14 chr4 47797864 47798005 -136490657 - MIR SINE MIR 0 262 117 425 280 85 30 chr4 47798555 47798755 -136489907 + MIR SINE MIR 50 260 -2 214 250 16 16 chr4 47798807 47798871 -136489791 + (TA)n Simple_repeat Simple_repeat 1 64 0 400 302 148 35 chr4 47798914 47799116 -136489546 + MIR SINE MIR 6 230 -32 348 273 10 10 chr4 47799686 47799785 -136488877 + MARNA DNA Mariner 385 483 -103 208 244 0 0 chr4 47799912 47799957 -136488705 + CT-rich Low_complexity Low_complexity 2 46 0 210 71 0 0 chr4 47800565 47800593 -136488069 + (A)n Simple_repeat Simple_repeat 1 28 0 279 54 0 0 chr4 47800641 47800678 -136487984 + (TG)n Simple_repeat Simple_repeat 2 38 0 22 70 0 0 chr4 47800895 47800938 -136487724 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr4 47801080 47801108 -136487554 + AT_rich Low_complexity Low_complexity 1 28 0 549 314 84 54 chr4 47801351 47801558 -136487104 + L1M4 LINE L1 2791 2990 -3156 23 0 0 0 chr4 47801558 47801581 -136487081 + AT_rich Low_complexity Low_complexity 1 23 0 549 314 84 54 chr4 47801581 47801979 -136486683 + L1M4 LINE L1 2990 3437 -2709 380 246 44 95 chr4 47802151 47802403 -136486259 + L2 LINE L2 3075 3313 0 183 156 0 0 chr4 47802640 47802672 -136485990 + GA-rich Low_complexity Low_complexity 1 32 0 5787 172 36 17 chr4 47803013 47804103 -136484559 + L1MA6 LINE L1 4239 5381 -919 2570 110 0 0 chr4 47804103 47804458 -136484204 + THE1A LTR MaLR 1 355 0 5787 172 36 17 chr4 47804458 47805107 -136483555 + L1MA6 LINE L1 5381 6016 -284 399 299 17 57 chr4 47805219 47805396 -136483266 + L2 LINE L2 3100 3269 -3 460 229 18 28 chr4 47805806 47805915 -136482747 + MER5A DNA MER1_type 39 146 -43 276 305 32 46 chr4 47806761 47806949 -136481713 - MIR SINE MIR 0 262 23 289 184 0 0 chr4 47807241 47807290 -136481372 - MIR SINE MIR -149 113 65 2187 125 3 0 chr4 47808185 47808538 -136480124 - AluSp SINE Alu 0 354 1 21 0 0 0 chr4 47809048 47809069 -136479593 + AT_rich Low_complexity Low_complexity 1 21 0 850 173 0 11 chr4 47809551 47809730 -136478932 + CT-rich Low_complexity Low_complexity 4 180 0 28 48 0 0 chr4 47810196 47810238 -136478424 + AT_rich Low_complexity Low_complexity 1 42 0 267 54 0 0 chr4 47810251 47810288 -136478374 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 529 316 31 58 chr4 47810445 47810771 -136477891 - L2 LINE L2 -504 2810 2494 565 279 86 46 chr4 47811838 47812118 -136476544 + L3b LINE CR1 1290 1580 -3 1561 196 25 41 chr4 47813379 47813747 -136474915 - MLT1A1 LTR MaLR -3 362 1 654 317 80 5 chr4 47813747 47813971 -136474691 - MIR SINE MIR -4 258 18 1689 219 20 5 chr4 47814114 47814516 -136474146 + L1MA10 LINE L1 5925 6332 -2 201 189 0 19 chr4 47815197 47815250 -136473412 + (TA)n Simple_repeat Simple_repeat 2 53 0 211 191 0 0 chr4 47815284 47815326 -136473336 + (TG)n Simple_repeat Simple_repeat 1 42 0 25 51 0 0 chr4 47816513 47816552 -136472110 + AT_rich Low_complexity Low_complexity 1 39 0 204 247 97 84 chr4 47817152 47817306 -136471356 + MIR SINE MIR 79 234 -28 785 270 63 8 chr4 47817752 47817989 -136470673 + MIR SINE MIR 11 260 -2 237 268 108 108 chr4 47818315 47818472 -136470190 - MIR SINE MIR -75 187 31 197 326 23 35 chr4 47821471 47821557 -136467105 - MIR3 SINE MIR -116 92 8 1580 227 28 11 chr4 47822868 47823326 -136465336 - LTR37B LTR ERV1 -2 466 1 342 306 40 16 chr4 47823446 47823570 -136465092 + MIR3 SINE MIR 75 201 -7 855 264 47 80 chr4 47823945 47824308 -136464354 - MLT1H LTR MaLR -198 351 1 2071 296 63 13 chr4 47824371 47825051 -136463611 - L1MEc LINE L1 -5648 748 35 21 82 0 0 chr4 47827626 47827675 -136460987 + AT_rich Low_complexity Low_complexity 1 49 0 255 271 0 0 chr4 47828268 47828327 -136460335 - L2 LINE L2 -5 3308 3250 243 292 0 52 chr4 47829380 47829476 -136459186 - MIR3 SINE MIR -4 204 114 200 271 17 0 chr4 47829605 47829664 -136458998 - L2 LINE L2 -4 3309 3250 291 28 0 0 chr4 47829695 47829731 -136458931 + (TTG)n Simple_repeat Simple_repeat 1 36 0 23 0 0 0 chr4 47829992 47830015 -136458647 + AT_rich Low_complexity Low_complexity 1 23 0 486 49 0 0 chr4 47830026 47830087 -136458575 + (TAA)n Simple_repeat Simple_repeat 2 62 0 201 304 38 25 chr4 47830614 47830693 -136457969 - L3 LINE CR1 -9 1568 1489 421 307 26 0 chr4 47830879 47830993 -136457669 + MIR3 SINE MIR 85 201 -7 288 351 134 15 chr4 47831251 47831385 -136457277 - L2 LINE L2 -5 3267 3118 993 186 58 18 chr4 47831416 47831642 -136457020 + MER96B DNA MER1_type? 1 235 -182 355 286 165 43 chr4 47832284 47832539 -136456123 - HAL1b LINE L1 -61 1287 1002 1416 148 209 11 chr4 47832666 47832949 -136455713 - MER1B DNA MER1_type 0 339 1 25 31 0 0 chr4 47837774 47837806 -136450856 + AT_rich Low_complexity Low_complexity 1 32 0 202 259 17 0 chr4 47837843 47837901 -136450761 + (TA)n Simple_repeat Simple_repeat 1 59 0 180 77 0 0 chr4 47837907 47837933 -136450729 + (CA)n Simple_repeat Simple_repeat 2 27 0 1990 146 0 3 chr4 47839760 47840055 -136448607 - AluSx SINE Alu -18 294 1 714 278 116 80 chr4 47840080 47840595 -136448067 - MLT1G LTR MaLR -6 536 1 2257 100 0 0 chr4 47840730 47841020 -136447642 + AluSg SINE Alu 5 294 -16 2206 143 8 27 chr4 47842807 47843178 -136445484 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr4 47843275 47843296 -136445366 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 47843407 47843428 -136445234 + AT_rich Low_complexity Low_complexity 1 21 0 1147 239 75 22 chr4 47843880 47844185 -136444477 - MER114 LTR ERV -37 611 269 2181 89 7 13 chr4 47844185 47844488 -136444174 + AluSg SINE Alu 1 301 -9 1147 239 75 22 chr4 47844488 47844675 -136443987 - MER114 LTR ERV -379 269 93 1797 106 4 4 chr4 47844922 47845176 -136443486 - AluSq SINE Alu -26 287 34 299 229 29 0 chr4 47845355 47845425 -136443237 - MER94 DNA DNA -62 72 1 2500 33 0 13 chr4 47846017 47846317 -136442345 - AluY SINE Alu -15 296 1 2251 86 3 0 chr4 47846926 47847228 -136441434 + AluSc SINE Alu 1 303 -6 2759 28 0 0 chr4 47848948 47849266 -136439396 + AluYb8 SINE Alu 1 318 0 447 269 228 6 chr4 47849937 47850104 -136438558 - MIR SINE MIR -30 232 29 236 195 37 49 chr4 47850199 47850281 -136438381 - L1MC4a LINE L1 -1859 5949 5869 414 260 30 10 chr4 47850386 47850486 -136438176 - L1MC4a LINE L1 -2163 5645 5544 1085 286 21 58 chr4 47850586 47851069 -136437593 + L2 LINE L2 2848 3312 -1 185 274 94 0 chr4 47853441 47853547 -136435115 - L3 LINE CR1 -297 1280 1165 321 276 66 52 chr4 47853730 47853879 -136434783 + MIR SINE MIR 23 172 -62 190 280 220 64 chr4 47853899 47854082 -136434580 - MIR SINE MIR -7 255 31 6506 29 0 0 chr4 47854082 47854842 -136433820 + L1PA4 LINE L1 5393 6152 -3 190 280 220 64 chr4 47854842 47854876 -136433786 - MIR SINE MIR -231 31 4 351 0 0 0 chr4 47855871 47855910 -136432752 + (CA)n Simple_repeat Simple_repeat 2 40 0 222 298 60 99 chr4 47855993 47856144 -136432518 + L2 LINE L2 2608 2752 -562 1043 192 43 118 chr4 47906950 47907341 -136381321 - MLT1A1 LTR MaLR -2 363 2 27 62 0 0 chr4 47907564 47907612 -136381050 + AT_rich Low_complexity Low_complexity 1 48 0 29 28 0 0 chr4 47907708 47907744 -136380918 + AT_rich Low_complexity Low_complexity 1 36 0 22 70 0 0 chr4 47908046 47908089 -136380573 + AT_rich Low_complexity Low_complexity 1 43 0 261 0 0 0 chr4 47908546 47908575 -136380087 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 269 349 101 6 chr4 47909263 47909432 -136379230 - L2 LINE L2 -241 3072 2888 288 211 267 0 chr4 47909840 47909930 -136378732 + MER5A DNA MER1_type 73 186 -3 248 259 62 12 chr4 47909933 47910014 -136378648 + MIR SINE MIR 28 112 -150 190 330 85 8 chr4 47910809 47910927 -136377735 - L2 LINE L2 -4 3268 3142 193 335 121 36 chr4 47911138 47911386 -136377276 + L2 LINE L2 3002 3270 -2 294 299 58 35 chr4 47911839 47912013 -136376649 - MARNA DNA Mariner -227 359 182 679 298 121 27 chr4 47912145 47912651 -136376011 - L2 LINE L2 -31 3282 2709 513 284 42 34 chr4 47913186 47913425 -136375237 + MIR SINE MIR 8 248 -14 358 264 186 6 chr4 47914511 47914678 -136373984 - MIR SINE MIR -12 250 54 1802 159 7 4 chr4 47916945 47917222 -136371440 - AluJb SINE Alu -34 278 1 203 164 16 0 chr4 47917359 47917420 -136371242 + (TA)n Simple_repeat Simple_repeat 2 63 0 269 149 0 0 chr4 47917909 47917956 -136370706 + L2 LINE L2 3263 3309 -4 191 239 22 0 chr4 47918679 47918725 -136369937 + L2 LINE L2 2862 2908 -405 227 333 30 7 chr4 47919041 47919176 -136369486 + L2 LINE L2 2216 2353 -961 194 314 0 0 chr4 47919469 47919520 -136369142 - MIR3 SINE MIR -15 193 143 638 209 39 55 chr4 47921101 47921283 -136367379 - MIR SINE MIR -26 236 58 210 233 0 0 chr4 47921390 47921433 -136367229 + L3 LINE CR1 1113 1155 -422 202 294 0 0 chr4 47921449 47921500 -136367162 + L3 LINE CR1 1456 1506 -71 281 293 20 0 chr4 47922545 47922644 -136366018 + MIR SINE MIR 91 191 -71 733 261 128 53 chr4 47922656 47923093 -136365569 + L1MCc LINE L1 36 505 -5918 1556 273 62 53 chr4 47923297 47924146 -136364516 + L1MCc LINE L1 816 1669 -4892 2452 355 17 18 chr4 47924261 47925375 -136363287 + ERVL LTR ERVL 2463 3575 -2189 571 235 117 6 chr4 47925738 47925900 -136362762 - MER5A DNA MER1_type -2 187 8 256 254 63 0 chr4 47926474 47926537 -136362125 + L2 LINE L2 3203 3269 -3 8148 76 1 2 chr4 47926648 47927706 -136360956 + L1P LINE L1 3620 4676 -1470 1000 162 35 15 chr4 47928722 47928919 -136359743 + MLT1A1 LTR MaLR 1 201 -164 21 0 0 0 chr4 47929447 47929468 -136359194 + AT_rich Low_complexity Low_complexity 1 21 0 289 323 116 8 chr4 47929481 47929632 -136359030 + MIR SINE MIR 16 185 -62 * 393 275 53 48 chr4 47929626 47929664 -136358998 - L3 LINE CR1 -364 1213 1177 2423 93 3 0 chr4 47929664 47929974 -136358688 - AluSp SINE Alu -2 311 1 393 275 53 48 chr4 47929974 47930124 -136358538 - L3 LINE CR1 -400 1177 1024 801 95 0 0 chr4 47930245 47930350 -136358312 - AluSq/x SINE Alu -207 105 1 1112 240 53 0 chr4 47931656 47932013 -136356649 + L1ME1 LINE L1 5723 6166 0 2293 110 3 3 chr4 47932018 47932328 -136356334 + AluSg SINE Alu 1 310 0 268 172 188 16 chr4 47932486 47932550 -136356112 + MLT1J1 LTR MaLR 76 150 -296 1284 151 5 0 chr4 47932833 47933038 -136355624 - L1MB7 LINE L1 -251 5933 5728 472 231 77 62 chr4 47934053 47934248 -136354414 + MLT1K LTR MaLR 387 584 -4 297 252 183 9 chr4 47934251 47934366 -136354296 + L3 LINE CR1 1374 1508 -69 404 212 240 0 chr4 47934382 47934528 -136354134 - MIR SINE MIR -1 261 81 286 229 43 0 chr4 47934870 47934940 -136353722 - Charlie4 DNA MER1_type -1 1960 1888 364 260 29 0 chr4 47935661 47935765 -136352897 + MIR SINE MIR 48 154 -108 8507 109 25 4 chr4 47935773 47937017 -136351645 - Tigger1 DNA MER2_type 0 2418 1149 1760 140 41 3 chr4 47937117 47937409 -136351253 + L1M4 LINE L1 5484 5786 -398 491 245 0 0 chr4 47937409 47937503 -136351159 + MER21B LTR ERV1 1 94 -769 564 179 26 43 chr4 47937572 47937689 -136350973 - FLAM_A SINE Alu -27 115 1 2285 113 3 0 chr4 47937694 47937996 -136350666 - AluSx SINE Alu -7 305 3 1206 30 0 7 chr4 47938007 47938142 -136350520 - AluYb8 SINE Alu -164 154 21 206 215 49 153 chr4 47938194 47938357 -136350305 - MER5A DNA MER1_type -43 146 1 255 219 31 0 chr4 47938465 47938529 -136350133 + MIR SINE MIR 82 147 -115 940 266 162 29 chr4 47938707 47939151 -136349511 + MLT1J LTR MaLR 1 503 -8 269 270 122 28 chr4 47939272 47939430 -136349232 + MIR SINE MIR 17 190 -65 199 288 62 12 chr4 47939575 47939655 -136349007 - MER5A DNA MER1_type -70 119 36 854 285 22 15 chr4 47939946 47940220 -136348442 + L1MEc LINE L1 81 356 -6040 412 256 8 38 chr4 47940449 47940592 -136348070 - MIR3 SINE MIR -37 171 32 303 104 0 0 chr4 47941010 47941058 -136347604 + (ATG)n Simple_repeat Simple_repeat 1 48 0 395 264 56 0 chr4 47941087 47941212 -136347450 - MIR SINE MIR -51 211 80 415 161 23 11 chr4 47941256 47941343 -136347319 + MER5A DNA MER1_type 13 100 -89 291 303 158 12 chr4 47943628 47943793 -136344869 - MIR SINE MIR -73 189 1 217 317 0 39 chr4 47943801 47943903 -136344759 - MIR SINE MIR -65 143 74 190 225 50 0 chr4 47944338 47944378 -136344284 + MIR SINE MIR 84 125 -137 1123 217 45 39 chr4 47944670 47944979 -136343683 + MLT1A1 LTR MaLR 1 311 -54 2422 104 0 0 chr4 47945141 47945450 -136343212 + AluSq SINE Alu 1 309 -4 2277 117 0 0 chr4 47946073 47946372 -136342290 + AluSx SINE Alu 1 299 -13 202 276 0 17 chr4 47947011 47947069 -136341593 + GA-rich Low_complexity Low_complexity 4 60 0 206 301 38 75 chr4 47947415 47947548 -136341114 - L3b LINE CR1 -226 1357 1230 1966 111 0 0 chr4 47948782 47949035 -136339627 - AluSx SINE Alu -22 290 38 226 399 68 6 chr4 47949367 47949705 -136338957 + L2 LINE L2 1348 1706 -1608 231 36 0 0 chr4 47949717 47949745 -136338917 + (CCCCCA)n Simple_repeat Simple_repeat 2 29 0 257 102 41 0 chr4 47950367 47950416 -136338246 - L2 LINE L2 -218 3054 3004 332 308 87 45 chr4 47953202 47953400 -136335262 - MIR SINE MIR -49 213 9 232 150 217 0 chr4 47954373 47954433 -136334229 - L1ME3A LINE L1 -194 5976 5904 183 42 0 0 chr4 47954516 47954540 -136334122 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 351 234 75 0 chr4 47954541 47954632 -136334030 - L1ME3A LINE L1 -408 5754 5658 1719 245 77 102 chr4 47954677 47955781 -136332881 + L2 LINE L2 2223 3306 -7 751 187 138 10 chr4 47955836 47956039 -136332623 + L1MEc LINE L1 1633 1861 -4535 1120 158 28 50 chr4 47956057 47956374 -136332288 + L1MEc LINE L1 2131 2440 -3956 964 197 35 20 chr4 47956375 47956420 -136332242 + AluJo SINE Alu 1 44 -268 1675 69 0 0 chr4 47956420 47956637 -136332025 + AluY SINE Alu 87 303 -8 964 197 35 20 chr4 47956637 47956789 -136331873 + AluJo SINE Alu 44 201 -111 328 242 210 8 chr4 47958060 47958184 -136330478 + MIR SINE MIR 108 256 -6 227 296 28 0 chr4 47958558 47958629 -136330033 - MIR SINE MIR -55 153 81 13074 84 9 7 chr4 47959553 47961268 -136327394 - L1P3 LINE L1 -4734 1727 10 846 113 0 0 chr4 47961279 47961435 -136327227 - AluSx SINE Alu 0 322 167 767 120 9 0 chr4 47961438 47961546 -136327116 - AluSx SINE Alu -202 110 2 1024 273 77 18 chr4 47961548 47961969 -136326693 + L2 LINE L2 2069 2557 -757 505 274 272 24 chr4 47962078 47962457 -136326205 + L2 LINE L2 2836 3308 -5 920 281 159 16 chr4 47963319 47963771 -136324891 - LTR33 LTR ERVL -2 519 3 1692 315 85 28 chr4 47964022 47964888 -136323774 + L2 LINE L2 2127 3062 -251 205 233 0 23 chr4 47965000 47965043 -136323619 + L2 LINE L2 3209 3250 -22 2043 111 13 0 chr4 47965170 47965468 -136323194 + AluSq SINE Alu 1 302 -11 216 0 0 0 chr4 47965719 47965743 -136322919 + (TTG)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr4 47967071 47967093 -136321569 + AT_rich Low_complexity Low_complexity 1 22 0 1601 190 0 26 chr4 47967101 47967412 -136321250 + AluSx SINE Alu 1 303 -9 632 145 7 138 chr4 47967412 47967564 -136321098 + AluJo/FRAM SINE Alu 137 268 -44 392 144 130 62 chr4 47968328 47968474 -136320188 - L1ME4a LINE L1 -20 6101 5946 31 0 0 0 chr4 47970641 47970672 -136317990 + AT_rich Low_complexity Low_complexity 1 31 0 2210 102 0 13 chr4 47971881 47972195 -136316467 + AluSx SINE Alu 1 310 -2 1824 179 0 0 chr4 47972205 47972542 -136316120 + AluJb SINE Alu 1 312 0 926 187 183 56 chr4 47974776 47975044 -136313618 - AluJo SINE Alu 0 302 1 199 244 0 0 chr4 47976329 47976374 -136312288 + MIR SINE MIR 108 152 -110 450 0 0 0 chr4 47976455 47976505 -136312157 + (TG)n Simple_repeat Simple_repeat 2 51 0 31 0 0 0 chr4 47976505 47976536 -136312126 + AT_rich Low_complexity Low_complexity 1 31 0 2114 103 0 10 chr4 47976542 47976843 -136311819 - AluSq SINE Alu -15 298 1 429 246 66 4 chr4 47976889 47977016 -136311646 - MIR SINE MIR -31 177 45 300 227 11 57 chr4 47977064 47977152 -136311510 + MIR SINE MIR 33 116 -92 761 265 56 17 chr4 47977875 47978162 -136310500 + LTR16C LTR ERVL 192 489 -2 564 213 102 82 chr4 47978163 47978407 -136310255 + MER102a DNA MER1_type 81 329 -1 536 309 85 38 chr4 47978407 47978643 -136310019 + MIR SINE MIR 1 247 -15 200 214 24 0 chr4 47981250 47981292 -136307370 + L2 LINE L2 3262 3304 -9 230 316 105 0 chr4 47982102 47982197 -136306465 - L2 LINE L2 -50 3222 3118 276 265 71 20 chr4 47982622 47982720 -136305942 - L2 LINE L2 -782 2532 2430 2130 110 3 3 chr4 47983193 47983503 -136305159 + AluSg SINE Alu 1 310 0 2206 115 0 3 chr4 47984281 47984593 -136304069 - AluSx SINE Alu -1 311 1 207 0 0 0 chr4 47984597 47984620 -136304042 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 304 195 230 0 chr4 47984728 47984815 -136303847 - L1M4 LINE L1 -2177 3969 3863 180 0 0 0 chr4 47985867 47985887 -136302775 + (ATG)n Simple_repeat Simple_repeat 1 20 0 590 362 87 0 chr4 47986030 47986259 -136302403 - MIR SINE MIR 0 262 14 558 223 9 0 chr4 47986346 47986458 -136302204 + L1 LINE L1 3732 3844 -2302 799 196 139 26 chr4 47987053 47987247 -136301415 + MER20 DNA MER1_type 4 219 0 1804 125 31 0 chr4 47987771 47988058 -136300604 + L1MA4 LINE L1 5688 5983 -317 1639 165 25 35 chr4 47989575 47989890 -136298772 - AluJo SINE Alu 0 312 1 24 32 0 0 chr4 47991924 47991955 -136296707 + AT_rich Low_complexity Low_complexity 1 31 0 213 65 0 0 chr4 47993879 47993910 -136294752 + (T)n Simple_repeat Simple_repeat 1 31 0 357 43 0 0 chr4 47994811 47994858 -136293804 + (TCTA)n Simple_repeat Simple_repeat 3 49 0 378 0 0 0 chr4 47994919 47994961 -136293701 + (TG)n Simple_repeat Simple_repeat 1 42 0 740 270 160 5 chr4 47995011 47995392 -136293270 - L1ME4a LINE L1 -69 6052 5613 195 263 18 18 chr4 47995686 47995743 -136292919 + L2 LINE L2 3216 3272 0 476 257 82 23 chr4 47995943 47996114 -136292548 - MIR SINE MIR -62 200 20 219 314 52 57 chr4 47996394 47996604 -136292058 - MIR SINE MIR -2 260 52 218 71 0 0 chr4 47996750 47996778 -136291884 - MIR SINE MIR -8 254 227 206 311 0 16 chr4 47996752 47996813 -136291849 - L2 LINE L2 -16 3297 3238 * 417 316 100 28 chr4 47996913 47997204 -136291458 - MER102b DNA MER1_type -28 313 2 244 343 87 45 chr4 47997292 47997671 -136290991 - L2 LINE L2 -690 2624 2230 278 318 146 34 chr4 47997684 47998005 -136290657 - L2 LINE L2 -1221 2093 1737 336 335 99 28 chr4 47998658 47998840 -136289822 + MIR3 SINE MIR 11 205 -3 387 41 0 0 chr4 47999360 47999409 -136289253 + (TG)n Simple_repeat Simple_repeat 2 50 0 352 260 0 13 chr4 48000600 48000677 -136287985 - L2 LINE L2 0 3313 3238 254 296 0 0 chr4 48001165 48001236 -136287426 - L2 LINE L2 -61 3252 3182 312 230 44 53 chr4 48001489 48001602 -136287060 + L2 LINE L2 2313 2424 -890 * 518 222 51 0 chr4 48001586 48001703 -136286959 + L2 LINE L2 3191 3313 0 2362 179 42 26 chr4 48001721 48002178 -136286484 + MLT2C2 LTR ERVL 1 464 0 938 168 28 11 chr4 48003076 48003255 -136285407 + MLT2C2 LTR ERVL 33 214 -250 252 364 23 49 chr4 48003275 48003539 -136285123 + L2 LINE L2 2458 2714 -600 264 105 0 0 chr4 48003539 48003577 -136285085 + Alu SINE Alu 256 293 -7 2053 111 0 14 chr4 48003587 48003875 -136284787 + AluSx SINE Alu 1 284 -28 325 0 0 0 chr4 48003875 48003911 -136284751 + (TAA)n Simple_repeat Simple_repeat 2 180 0 379 302 58 29 chr4 48004118 48004257 -136284405 - MIR3 SINE MIR -62 146 4 4023 133 19 72 chr4 48004888 48006014 -136282648 - L1PA15 LINE L1 -292 5873 4832 226 219 0 0 chr4 48007776 48007817 -136280845 + (CA)n Simple_repeat Simple_repeat 2 42 0 21 0 0 0 chr4 48008480 48008501 -136280161 + AT_rich Low_complexity Low_complexity 1 21 0 306 0 0 0 chr4 48008578 48008612 -136280050 + (CA)n Simple_repeat Simple_repeat 1 34 0 1475 145 90 1 chr4 48008902 48009208 -136279454 - MLT1D LTR MaLR -1 504 129 2134 105 27 7 chr4 48009215 48009386 -136279276 - AluSx SINE Alu -8 304 123 225 0 0 0 chr4 48009386 48009411 -136279251 + (TTG)n Simple_repeat Simple_repeat 3 27 0 2134 105 27 7 chr4 48009411 48009533 -136279129 - AluSx SINE Alu -189 123 5 965 69 15 8 chr4 48009565 48009696 -136278966 - AluSp/q SINE Alu -7 306 175 503 116 0 0 chr4 48009698 48009767 -136278895 - AluS SINE Alu -244 69 1 558 167 35 44 chr4 48009772 48009886 -136278776 - MLT1D LTR MaLR -392 113 1 276 363 51 25 chr4 48009892 48010049 -136278613 - MIR SINE MIR -71 191 31 191 268 0 0 chr4 48010685 48010726 -136277936 + L2 LINE L2 3262 3302 -11 237 222 62 0 chr4 48010793 48010874 -136277788 - L1ME4a LINE L1 -11 6110 6025 329 158 0 0 chr4 48011728 48011785 -136276877 + U2 snRNA snRNA 1 57 -131 352 321 149 37 chr4 48012465 48012786 -136275876 - L1ME4a LINE L1 -2032 5776 5420 24 32 0 0 chr4 48012909 48012940 -136275722 + AT_rich Low_complexity Low_complexity 1 31 0 240 313 115 32 chr4 48013460 48013677 -136274985 + L1ME3A LINE L1 5404 5638 -2170 309 310 53 11 chr4 48013724 48013911 -136274751 + L1ME3A LINE L1 5706 5900 -270 309 288 11 30 chr4 48014132 48014380 -136274282 + CT-rich Low_complexity Low_complexity 1 333 -21 338 103 0 44 chr4 48014380 48014471 -136274191 - L1PA7 LINE L1 0 6154 6090 309 288 11 30 chr4 48014471 48014493 -136274169 + CT-rich Low_complexity Low_complexity 333 354 0 484 233 0 0 chr4 48014612 48014715 -136273947 + U13 snRNA snRNA 2 104 0 4301 157 137 3 chr4 48016042 48017022 -136271640 + L1MA9 LINE L1 5177 6290 -22 180 0 0 0 chr4 48017261 48017281 -136271381 + (GA)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr4 48018133 48018154 -136270508 + AT_rich Low_complexity Low_complexity 1 21 0 232 250 0 0 chr4 48018411 48018467 -136270195 - MIR SINE MIR -38 224 169 342 240 102 91 chr4 48018728 48019003 -136269659 + LTR37A LTR ERV1 81 358 -68 281 228 118 59 chr4 48019150 48019286 -136269376 + L2 LINE L2 2831 2974 -340 * 458 242 35 91 chr4 48019284 48019515 -136269147 + L2 LINE L2 3089 3306 -7 218 191 16 48 chr4 48019618 48019681 -136268981 - MER5A DNA MER1_type -2 187 127 997 308 58 50 chr4 48019825 48020305 -136268357 + MLT1K LTR MaLR 95 578 -10 639 112 10 10 chr4 48020851 48020949 -136267713 + MER4A LTR ERV1 1 98 -566 1914 131 3 22 chr4 48020949 48021301 -136267361 + MER4A LTR ERV1 261 664 0 25 51 0 0 chr4 48021912 48021951 -136266711 + AT_rich Low_complexity Low_complexity 1 39 0 1959 169 37 130 chr4 48022208 48022883 -136265779 + LTR9 LTR ERV1 1 612 0 255 282 176 0 chr4 48023168 48023253 -136265409 - L2 LINE L2 0 3313 3214 679 234 7 0 chr4 48023667 48023821 -136264841 - L1MD2 LINE L1 -10 6349 6195 2037 193 21 19 chr4 48023822 48024246 -136264416 - L1MD2 LINE L1 -217 6142 5718 463 235 55 24 chr4 48024255 48024496 -136264166 - L1ME LINE L1 -4957 686 418 231 235 0 86 chr4 48024687 48024768 -136263894 - L1ME LINE L1 -5545 525 452 510 364 36 7 chr4 48024912 48025187 -136263475 - L1ME LINE L1 -5766 304 22 3850 150 108 6 chr4 48025721 48026423 -136262239 + LTR1B LTR ERV1 1 774 -52 209 320 90 40 chr4 48026840 48026940 -136261722 + L2 LINE L2 3184 3288 -25 917 278 56 72 chr4 48027083 48027371 -136261291 + L2 LINE L2 2831 3111 -202 1815 152 26 0 chr4 48027371 48027641 -136261021 - AluJb SINE Alu -26 286 10 917 278 56 72 chr4 48027641 48027798 -136260864 + L2 LINE L2 3111 3269 -44 537 278 11 84 chr4 48028012 48028203 -136260459 - MIR SINE MIR -77 185 9 208 287 99 40 chr4 48028323 48028424 -136260238 + MIR SINE MIR 46 152 -56 181 298 11 64 chr4 48029745 48029839 -136258823 - MIR SINE MIR -40 222 134 254 302 23 12 chr4 48029842 48029928 -136258734 - MIR SINE MIR -99 163 77 405 58 0 0 chr4 48030937 48030989 -136257673 + (TG)n Simple_repeat Simple_repeat 1 52 0 631 24 24 0 chr4 48033583 48033668 -136254994 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 638 126 109 0 chr4 48034119 48034238 -136254424 - L1PB3 LINE L1 -563 5593 5462 * 1259 129 15 10 chr4 48034230 48034431 -136254231 + L1PB3 LINE L1 5612 5813 -341 892 76 0 0 chr4 48034431 48034550 -136254112 + AluY SINE Alu 193 311 0 2090 128 27 3 chr4 48034554 48034882 -136253780 + L1PB3 LINE L1 5816 6151 -3 252 0 0 0 chr4 48034912 48034940 -136253722 + (GA)n Simple_repeat Simple_repeat 1 28 0 254 278 71 59 chr4 48035357 48035526 -136253136 + HAL1 LINE L1 1167 1337 -1170 360 269 99 16 chr4 48036144 48036326 -136252336 + L1MC4a LINE L1 3742 3938 -2208 2256 75 0 0 chr4 48036377 48036698 -136251964 + AluY SINE Alu 1 321 0 1175 76 0 0 chr4 48036707 48036864 -136251798 + AluY SINE Alu 125 281 -30 306 67 0 0 chr4 48036864 48036909 -136251753 + (TC)n Simple_repeat Simple_repeat 2 46 0 714 299 99 35 chr4 48036964 48037594 -136251068 + L1MC4a LINE L1 4023 4612 -1801 2213 118 0 20 chr4 48037594 48037899 -136250763 + AluSx SINE Alu 1 299 -13 714 299 99 35 chr4 48037899 48038785 -136249877 + L1MC4a LINE L1 4612 5642 -771 450 296 108 48 chr4 48038920 48039042 -136249620 + L1MC4a LINE L1 5631 5744 -2064 2023 128 21 53 chr4 48039042 48039418 -136249244 + THE1B LTR MaLR 1 364 0 450 296 108 48 chr4 48039418 48039778 -136248884 + L1MC4a LINE L1 5744 6142 -1666 2019 116 131 28 chr4 48039928 48040316 -136248346 + MSTA LTR MaLR 1 428 0 241 341 192 37 chr4 48041561 48041775 -136246887 - L2 LINE L2 -17 3255 3009 227 211 0 39 chr4 48042115 48042167 -136246495 + L2 LINE L2 3132 3181 -91 255 280 0 0 chr4 48042674 48042749 -136245913 + LTR50 LTR ERVL 3 77 -718 * 264 307 0 0 chr4 48042746 48042821 -136245841 + LTR33 LTR ERVL 100 174 -347 2322 89 0 16 chr4 48042825 48043128 -136245534 + AluSc SINE Alu 1 298 -11 354 202 40 50 chr4 48043372 48043471 -136245191 + LTR33A LTR ERVL 417 514 -9 299 348 43 7 chr4 48043544 48043682 -136244980 + L2 LINE L2 3171 3313 0 2168 118 0 0 chr4 48044266 48044571 -136244091 - AluSg SINE Alu -5 305 1 292 309 37 37 chr4 48045240 48045402 -136243260 + MLT1K LTR MaLR 137 298 -290 221 303 53 75 chr4 48046477 48046665 -136241997 - L3 LINE CR1 -185 1392 1209 665 330 59 20 chr4 48047832 48047876 -136240786 - L3 LINE CR1 -772 805 764 1860 141 13 37 chr4 48047876 48048175 -136240487 - AluSx SINE Alu -18 294 3 665 330 59 20 chr4 48048175 48048433 -136240229 - L3 LINE CR1 -813 764 491 2404 239 96 43 chr4 48049040 48049800 -136238862 + MER21B LTR ERV1 13 812 -51 21 0 0 0 chr4 48050487 48050508 -136238154 + AT_rich Low_complexity Low_complexity 1 21 0 221 208 19 0 chr4 48050895 48050948 -136237714 + T-rich Low_complexity Low_complexity 2 55 0 243 234 81 27 chr4 48051099 48051210 -136237452 + L1ME4a LINE L1 5930 6046 -75 922 198 94 0 chr4 48052960 48053152 -136235510 + MER20 DNA MER1_type 1 210 -9 410 304 123 22 chr4 48055179 48055406 -136233256 - MIR SINE MIR 0 262 13 285 190 38 38 chr4 48055488 48055567 -136233095 + MER116 DNA Mariner 1 79 -1 349 71 35 47 chr4 48055588 48055602 -136233060 + (TATAG)n Simple_repeat Simple_repeat 2 15 -70 2016 183 3 5 chr4 48055602 48055969 -136232693 - MER47A DNA MER2_type 0 366 1 349 71 35 47 chr4 48055969 48056039 -136232623 + (TATAG)n Simple_repeat Simple_repeat 15 85 0 283 253 280 0 chr4 48056260 48056413 -136232249 + MIR SINE MIR 9 197 -65 1295 90 0 6 chr4 48056428 48056595 -136232067 + AluSx SINE Alu 1 166 -146 4558 131 41 61 chr4 48056595 48057611 -136231051 + pTR5 LTR ERV1 743 2025 -413 348 255 10 0 chr4 48057611 48057709 -136230953 + LTR30 LTR ERV1 544 642 -80 1402 99 14 5 chr4 48057718 48057931 -136230731 + pTR5 LTR ERV1 177 391 -2047 1092 79 0 0 chr4 48057931 48058070 -136230592 + AluSp/q SINE Alu 162 300 -13 210 222 0 0 chr4 48058403 48058448 -136230214 + C-rich Low_complexity Low_complexity 1 45 0 628 143 0 0 chr4 48058470 48058603 -136230059 + (C)n Simple_repeat Simple_repeat 1 133 0 190 86 60 52 chr4 48058590 48058706 -136229956 + (CACAC)n Simple_repeat Simple_repeat 5 121 0 * 270 143 0 0 chr4 48058704 48058767 -136229895 + (C)n Simple_repeat Simple_repeat 1 63 0 2489 50 0 3 chr4 48058868 48059169 -136229493 - AluY SINE Alu -11 300 1 442 326 58 39 chr4 48059448 48059706 -136228956 + L2 LINE L2 2226 2488 -826 628 296 60 73 chr4 48059720 48060105 -136228557 + MLT1I LTR MaLR 28 407 -2 331 358 6 30 chr4 48060180 48060345 -136228317 + L2 LINE L2 2594 2754 -560 183 300 33 56 chr4 48060613 48060703 -136227959 + L2 LINE L2 2764 2851 -463 1251 179 19 0 chr4 48060909 48061121 -136227541 + LTR53 LTR ERVL 9 224 -295 1265 180 0 9 chr4 48061121 48061349 -136227313 - AluJb SINE Alu -5 307 82 1008 196 101 49 chr4 48061352 48061638 -136227024 + LTR53 LTR ERVL 219 519 0 268 324 83 9 chr4 48061896 48062004 -136226658 - MIR SINE MIR -111 151 36 6498 98 4 0 chr4 48063197 48064613 -136224049 + L1PA11 LINE L1 4752 6174 0 2160 124 0 0 chr4 48065018 48065316 -136223346 - AluSg SINE Alu 0 310 13 22 35 0 0 chr4 48065519 48065548 -136223114 + AT_rich Low_complexity Low_complexity 1 29 0 313 326 74 37 chr4 48065810 48065945 -136222717 - MIR3 SINE MIR -15 193 54 252 0 0 0 chr4 48066072 48066100 -136222562 + (TG)n Simple_repeat Simple_repeat 2 29 0 442 254 112 15 chr4 48066181 48066315 -136222347 - MIR3 SINE MIR -52 156 10 2067 126 0 10 chr4 48066415 48066709 -136221953 - AluSx SINE Alu -21 291 1 995 216 6 11 chr4 48066967 48067190 -136221472 - MER20 DNA MER1_type 0 219 3 270 326 29 47 chr4 48069008 48069180 -136219482 - L2 LINE L2 -541 2773 2605 1540 227 60 56 chr4 48069499 48069996 -136218666 - LTR33 LTR ERVL 0 521 23 274 273 16 44 chr4 48070866 48071049 -136217613 + T-rich Low_complexity Low_complexity 2 179 0 255 339 0 28 chr4 48070995 48071175 -136217487 + CT-rich Low_complexity Low_complexity 3 177 0 * 708 222 198 5 chr4 48072200 48072407 -136216255 + MIR SINE MIR 5 251 -11 291 28 0 0 chr4 48072479 48072515 -136216147 + (CA)n Simple_repeat Simple_repeat 2 37 0 330 362 51 29 chr4 48072619 48072757 -136215905 + L2 LINE L2 3123 3263 -9 1144 313 202 15 chr4 48073135 48074191 -136214471 + L2 LINE L2 1712 2964 -350 807 302 9 17 chr4 48074441 48074673 -136213989 + MIR SINE MIR 33 262 0 181 214 0 24 chr4 48076091 48076133 -136212529 + MIR SINE MIR 182 222 -40 1081 135 45 35 chr4 48076764 48076964 -136211698 + MLT1B LTR MaLR 1 202 -188 744 246 5 6 chr4 48076956 48077097 -136211565 + MLT2D LTR ERVL 217 457 -63 * 264 30 0 0 chr4 48077097 48077130 -136211532 + (TC)n Simple_repeat Simple_repeat 2 34 0 744 246 5 6 chr4 48077130 48077153 -136211509 + MLT2D LTR ERVL 457 479 -41 280 187 13 13 chr4 48077162 48077237 -136211425 + (TA)n Simple_repeat Simple_repeat 1 75 0 275 164 0 39 chr4 48077238 48077296 -136211366 + MLT2C1 LTR ERVL 350 397 0 757 280 85 8 chr4 48077357 48077593 -136211069 + MIR SINE MIR 7 260 -2 787 293 110 48 chr4 48077663 48078144 -136210518 - LTR67 LTR ERVL -45 512 2 282 366 79 20 chr4 48078444 48078646 -136210016 + MIR SINE MIR 20 233 -29 331 384 0 0 chr4 48079286 48079398 -136209264 - L2 LINE L2 -27 3245 3134 349 203 0 0 chr4 48079429 48079493 -136209169 - L2 LINE L2 0 3313 3250 488 298 147 16 chr4 48079495 48079703 -136208959 - MIR SINE MIR 0 262 33 417 37 0 0 chr4 48080166 48080220 -136208442 + L1PA6 LINE L1 6099 6152 -2 2075 112 26 3 chr4 48080254 48080558 -136208104 + AluSx SINE Alu 1 311 -1 381 58 0 0 chr4 48080588 48080640 -136208022 + (CAGG)n Simple_repeat Simple_repeat 2 53 0 916 277 181 15 chr4 48080793 48081269 -136207393 + HAL1 LINE L1 1628 2182 -325 243 61 0 0 chr4 48081574 48081607 -136207055 + (TG)n Simple_repeat Simple_repeat 2 34 0 512 213 51 72 chr4 48081636 48081871 -136206791 + HAL1 LINE L1 2278 2507 0 2483 108 8 3 chr4 48082271 48082624 -136206038 + THE1A LTR MaLR 1 355 0 3674 34 0 0 chr4 48082883 48083323 -136205339 - L1P LINE L1 -2272 3874 3435 6890 28 0 0 chr4 48083323 48084124 -136204538 + L1PA3 LINE L1 5353 6153 -2 381 247 143 44 chr4 48084934 48085116 -136203546 - MIR SINE MIR -28 234 35 198 0 0 0 chr4 48085255 48085277 -136203385 + (A)n Simple_repeat Simple_repeat 1 22 0 195 307 257 5 chr4 48085581 48085783 -136202879 + L2 LINE L2 1703 1955 -1359 526 228 0 0 chr4 48085784 48085907 -136202755 + LTR37A LTR ERV1 283 405 -21 237 250 14 0 chr4 48085937 48086009 -136202653 + MER113 DNA MER1_type? 365 437 -84 4773 176 23 15 chr4 48086454 48087574 -136201088 - L1MA7 LINE L1 -4 6287 5158 1435 233 90 70 chr4 48087552 48087681 -136200981 + L1M1 LINE L1 2791 2916 -4649 * 1427 207 10 32 chr4 48087681 48087995 -136200667 + AluJo SINE Alu 1 307 -5 1435 233 90 70 chr4 48087995 48088134 -136200528 + L1M1 LINE L1 2916 3051 -4514 192 40 0 0 chr4 48088134 48088159 -136200503 + (TA)n Simple_repeat Simple_repeat 2 26 0 1435 233 90 70 chr4 48088159 48088756 -136199906 + L1M1 LINE L1 3051 3674 -3891 953 219 23 47 chr4 48088757 48089099 -136199563 + L1M1 LINE L1 3605 3938 -3627 733 214 98 13 chr4 48089125 48089359 -136199303 + MER112 DNA MER1_type 2 255 -1 552 30 0 0 chr4 48089486 48089552 -136199110 + (TCCA)n Simple_repeat Simple_repeat 4 69 0 299 286 160 0 chr4 48090376 48090495 -136198167 - MIR SINE MIR 0 262 125 758 225 69 6 chr4 48090632 48090911 -136197751 - Charlie4a DNA MER1_type -16 492 196 32 0 0 0 chr4 48090951 48090983 -136197679 + AT_rich Low_complexity Low_complexity 1 32 0 3455 81 24 2 chr4 48090983 48091477 -136197185 - L1MA1 LINE L1 -6 6296 5792 567 204 43 56 chr4 48091480 48091642 -136197020 - Charlie4a DNA MER1_type -325 183 24 301 316 75 61 chr4 48091669 48091695 -136196967 + MIR SINE MIR 16 40 -222 874 209 17 78 chr4 48091695 48091925 -136196737 + MER20 DNA MER1_type 4 219 0 301 316 75 61 chr4 48091925 48092110 -136196552 + MIR SINE MIR 40 230 -32 504 284 16 33 chr4 48093105 48093288 -136195374 - MIR SINE MIR -71 191 12 400 313 40 7 chr4 48094309 48094459 -136194203 - MIR SINE MIR -6 256 102 266 232 30 40 chr4 48094600 48094699 -136193963 + (TATG)n Simple_repeat Simple_repeat 3 100 0 348 24 0 0 chr4 48094734 48094775 -136193887 + (TG)n Simple_repeat Simple_repeat 2 42 0 198 271 21 73 chr4 48094929 48095025 -136193637 + L2 LINE L2 3182 3272 -41 326 225 112 34 chr4 48095027 48095116 -136193546 - MIR SINE MIR -166 96 1 432 264 9 0 chr4 48095786 48095915 -136192747 + L1ME4a LINE L1 5675 5806 -315 321 252 0 35 chr4 48095979 48096094 -136192568 - MER97b DNA MER1_type? 0 1053 943 1887 245 52 35 chr4 48096370 48096933 -136191729 - MER97a DNA MER1_type? -322 572 1 283 292 69 28 chr4 48097414 48097558 -136191104 + L1ME4a LINE L1 5969 6118 -3 369 0 0 0 chr4 48098660 48098701 -136189961 + (TG)n Simple_repeat Simple_repeat 2 42 0 323 257 250 0 chr4 48098799 48098935 -136189727 + MIR SINE MIR 77 246 -16 229 259 24 12 chr4 48098952 48099037 -136189625 + A-rich Low_complexity Low_complexity 3 88 0 308 208 168 46 chr4 48100129 48100302 -136188360 - HAL1 LINE L1 0 2507 2314 1039 291 75 39 chr4 48100370 48100811 -136187851 - HAL1 LINE L1 -775 1732 1308 2218 128 0 0 chr4 48100811 48101124 -136187538 - AluSq SINE Alu 0 313 1 1039 291 75 39 chr4 48101124 48101578 -136187084 - HAL1 LINE L1 -1199 1308 805 378 202 0 0 chr4 48101586 48101670 -136186992 - L1PB4 LINE L1 -3695 2451 2368 1866 248 4 4 chr4 48101671 48102131 -136186531 + L1PB4 LINE L1 2463 2922 -3224 4485 156 35 11 chr4 48102140 48103612 -136185050 + L1PB4 LINE L1 4581 6148 -8 995 200 43 52 chr4 48103689 48103994 -136184668 + L1ME1 LINE L1 5863 6164 -2 274 312 64 57 chr4 48104150 48104448 -136184214 - HAL1 LINE L1 -1885 622 323 1358 201 45 28 chr4 48104469 48104758 -136183904 - AluJb SINE Alu -4 308 15 369 294 43 108 chr4 48104860 48105091 -136183571 - HAL1 LINE L1 -2291 216 1 261 0 0 0 chr4 48105412 48105441 -136183221 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 14203 32 5 0 chr4 48105441 48107921 -136180741 - L1PA4 LINE L1 -10 6145 3657 6705 42 1 1 chr4 48107921 48108753 -136179909 + L1P LINE L1 1761 2592 -3554 371 290 54 48 chr4 48108908 48109094 -136179568 + MIR SINE MIR 11 197 -65 22 0 0 0 chr4 48109281 48109303 -136179359 + AT_rich Low_complexity Low_complexity 1 22 0 501 286 27 58 chr4 48111188 48111412 -136177250 - LTR33 LTR ERVL 0 521 305 314 253 13 0 chr4 48111574 48111653 -136177009 - LTR33 LTR ERVL -432 89 10 446 274 26 39 chr4 48111662 48111761 -136176901 + MIR SINE MIR 95 193 -69 2147 136 125 8 chr4 48111761 48112144 -136176518 + MSTA LTR MaLR 1 428 0 446 274 26 39 chr4 48112144 48112197 -136176465 + MIR SINE MIR 193 245 -17 242 350 73 34 chr4 48112444 48112621 -136176041 + L2 LINE L2 2521 2704 -610 819 262 5 16 chr4 48112802 48112993 -136175669 + MER5A DNA MER1_type 1 189 0 379 302 108 31 chr4 48113417 48113546 -136175116 - MIR SINE MIR -118 144 6 29 47 0 0 chr4 48113773 48113816 -136174846 + AT_rich Low_complexity Low_complexity 1 43 0 2177 85 29 23 chr4 48113968 48114275 -136174387 + AluY SINE Alu 1 309 -2 944 229 40 20 chr4 48115455 48115708 -136172954 + MIR SINE MIR 5 262 0 2174 119 0 32 chr4 48115820 48116132 -136172530 + AluSx SINE Alu 1 302 -10 13975 199 53 14 chr4 48116169 48122252 -136166410 + L1PB1 LINE L1 80 6507 -360 381 267 0 0 chr4 48122259 48122349 -136166313 + L1MC4 LINE L1 6614 6703 -1339 2279 138 3 5 chr4 48122352 48122723 -136165939 + L1PB1 LINE L1 6498 6867 0 222 118 0 0 chr4 48122798 48122832 -136165830 + (A)n Simple_repeat Simple_repeat 1 34 0 217 323 32 91 chr4 48122878 48123064 -136165598 - L3 LINE CR1 -477 1100 926 4272 53 0 2 chr4 48123424 48123989 -136164673 - L1PA5 LINE L1 -2787 3359 2796 15820 49 1 0 chr4 48123989 48126753 -136161909 + L1PA5 LINE L1 3384 6153 -1 378 333 20 7 chr4 48127811 48127964 -136160698 - MIR SINE MIR -16 246 92 663 220 71 49 chr4 48129193 48129568 -136159094 + L1ME3 LINE L1 5665 6161 -1 209 211 19 0 chr4 48129571 48129623 -136159039 + A-rich Low_complexity Low_complexity 4 56 0 26 93 0 0 chr4 48130640 48130715 -136157947 + AT_rich Low_complexity Low_complexity 1 75 0 205 403 40 8 chr4 48131230 48131354 -136157308 + L2 LINE L2 3129 3256 -16 23 86 0 0 chr4 48131536 48131594 -136157068 + AT_rich Low_complexity Low_complexity 1 58 0 264 343 38 9 chr4 48131835 48131940 -136156722 + L3 LINE CR1 270 377 -1200 238 271 115 31 chr4 48132030 48132126 -136156536 + MIR SINE MIR 48 151 -111 256 375 0 0 chr4 48132305 48132393 -136156269 + L2 LINE L2 3182 3269 -44 24 32 0 0 chr4 48132459 48132490 -136156172 + AT_rich Low_complexity Low_complexity 1 31 0 611 294 48 17 chr4 48132490 48132721 -136155941 + L3 LINE CR1 990 1227 -350 32 26 0 0 chr4 48132838 48132877 -136155785 + AT_rich Low_complexity Low_complexity 1 39 0 188 355 0 11 chr4 48132976 48133069 -136155593 + MIR3 SINE MIR 111 202 -6 2075 120 7 0 chr4 48133070 48133369 -136155293 - AluSg SINE Alu -7 303 3 272 294 50 59 chr4 48133683 48133802 -136154860 + L2 LINE L2 3155 3272 0 237 268 0 0 chr4 48134203 48134259 -136154403 + (TA)n Simple_repeat Simple_repeat 1 56 0 1023 240 144 32 chr4 48134500 48135126 -136153536 + LTR50 LTR ERVL 6 793 -2 6973 156 37 20 chr4 48135941 48137127 -136151535 + L1M1 LINE L1 12 1217 -6348 1072 177 10 84 chr4 48137124 48137423 -136151239 - L1 LINE L1 -3523 2623 2347 * 344 256 70 37 chr4 48137472 48137647 -136151015 - L1P4 LINE L1 -680 5485 5304 610 314 76 41 chr4 48137684 48137698 -136150964 - L1M4 LINE L1 -912 5234 5222 2281 101 3 3 chr4 48137698 48138005 -136150657 + AluSp SINE Alu 7 313 0 610 314 76 41 chr4 48138005 48138452 -136150210 - L1M4 LINE L1 -924 5222 4757 23 0 0 0 chr4 48138551 48138574 -136150088 + AT_rich Low_complexity Low_complexity 1 23 0 222 189 0 38 chr4 48138752 48138805 -136149857 + (TATG)n Simple_repeat Simple_repeat 2 52 0 265 341 0 24 chr4 48139439 48139521 -136149141 - L2 LINE L2 -9 3304 3225 265 276 186 14 chr4 48139588 48139733 -136148929 - MIR SINE MIR -1 261 92 2016 143 122 10 chr4 48140397 48140782 -136147880 + MSTA LTR MaLR 1 428 0 21 36 0 0 chr4 48141556 48141584 -136147078 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr4 48141976 48142013 -136146649 + AT_rich Low_complexity Low_complexity 1 37 0 198 354 94 22 chr4 48142288 48142607 -136146055 - L2 LINE L2 -978 2336 1995 689 168 56 35 chr4 48142621 48142764 -136145898 + MER45A DNA AcHobo 29 174 -4 2246 106 3 3 chr4 48144096 48144397 -136144265 - AluSx SINE Alu -11 301 1 24 32 0 0 chr4 48144622 48144653 -136144009 + AT_rich Low_complexity Low_complexity 1 31 0 441 224 131 0 chr4 48144710 48144817 -136143845 + L2 LINE L2 3193 3313 0 220 374 8 46 chr4 48144930 48145061 -136143601 - MIR SINE MIR -67 141 16 636 112 10 0 chr4 48145095 48145193 -136143469 + AluSg SINE Alu 1 99 -211 1451 69 0 0 chr4 48145357 48145532 -136143130 + AluSg/x SINE Alu 127 301 -9 926 280 48 36 chr4 48145651 48145837 -136142825 + L1MCa LINE L1 1095 1277 -5330 225 0 0 0 chr4 48145837 48145862 -136142800 + (GA)n Simple_repeat Simple_repeat 2 26 0 926 280 48 36 chr4 48145862 48146438 -136142224 + L1MCa LINE L1 1277 2061 -4546 23 33 0 0 chr4 48146648 48146678 -136141984 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr4 48147158 48147189 -136141473 + AT_rich Low_complexity Low_complexity 1 31 0 202 368 144 14 chr4 48147287 48147564 -136141098 + L2 LINE L2 2364 2676 -638 281 330 185 18 chr4 48147625 48147852 -136140810 + L2 LINE L2 2807 3071 -201 296 296 0 72 chr4 48149127 48149252 -136139410 - L2 LINE L2 0 3272 3157 25 0 0 0 chr4 48149660 48149685 -136138977 + AT_rich Low_complexity Low_complexity 1 25 0 270 386 17 59 chr4 48151299 48151535 -136137127 + L3 LINE CR1 1273 1498 -79 354 23 0 0 chr4 48152178 48152221 -136136441 + (TG)n Simple_repeat Simple_repeat 2 44 0 1339 277 43 32 chr4 48152665 48153348 -136135314 - L2 LINE L2 0 3313 2634 2040 161 28 102 chr4 48153352 48153894 -136134768 - MLT1D LTR MaLR 0 505 4 1531 90 14 5 chr4 48155592 48155814 -136132848 - L1PA13 LINE L1 -1 6162 5939 2246 101 10 3 chr4 48155846 48156153 -136132509 + AluSc SINE Alu 1 309 0 22 35 0 0 chr4 48156479 48156508 -136132154 + AT_rich Low_complexity Low_complexity 1 29 0 2032 100 6 42 chr4 48157456 48157767 -136130895 + AluSg1 SINE Alu 1 300 -9 244 299 153 60 chr4 48157827 48157896 -136130766 - L2 LINE L2 0 3313 3252 2226 125 0 0 chr4 48157896 48158207 -136130455 + AluSq SINE Alu 1 311 -2 244 299 153 60 chr4 48158207 48158569 -136130093 - L2 LINE L2 -61 3252 2842 1022 102 0 0 chr4 48158717 48158844 -136129818 - AluSg SINE Alu -183 127 1 2065 132 0 3 chr4 48159878 48160173 -136128489 + AluSx SINE Alu 5 298 -14 271 268 0 0 chr4 48161657 48161713 -136126949 - MIR3 SINE MIR -54 154 99 846 220 133 106 chr4 48163057 48163530 -136125132 - MLT1D LTR MaLR -6 499 14 212 290 318 0 chr4 48163917 48164024 -136124638 + MIR SINE MIR 8 148 -114 219 224 17 17 chr4 48164028 48164086 -136124576 + L2 LINE L2 3204 3261 -11 390 255 102 0 chr4 48164286 48164384 -136124278 + LTR16A LTR ERVL 236 343 -107 300 339 39 51 chr4 48164394 48164648 -136124014 + ERVL LTR ERVL 2792 3042 -2722 1375 214 61 13 chr4 48164648 48164961 -136123701 + MLT1B-int LTR MaLR 1043 1370 -1 1849 184 17 47 chr4 48164962 48165364 -136123298 + MLT1B LTR MaLR 1 390 0 748 302 57 16 chr4 48165400 48165645 -136123017 + LTR16A LTR ERVL 186 440 -10 648 271 83 70 chr4 48166625 48167012 -136121650 + L2 LINE L2 2922 3313 0 2256 109 0 0 chr4 48167863 48168156 -136120506 + AluSp SINE Alu 9 301 -12 282 256 93 0 chr4 48168173 48168259 -136120403 - MER92C LTR ERV1 -2 552 459 1877 206 41 18 chr4 48168293 48168731 -136119931 + MER31B LTR ERV1 1 448 -18 26 0 0 0 chr4 48168731 48168757 -136119905 + AT_rich Low_complexity Low_complexity 1 26 0 524 251 15 96 chr4 48168769 48168968 -136119694 - MER92C LTR ERV1 -371 183 1 525 251 109 31 chr4 48170253 48170710 -136117952 - MLT1H1 LTR MaLR 0 549 21 2819 209 5 9 chr4 48170740 48171291 -136117371 - MER82 DNA MER2_type 0 653 105 528 232 0 0 chr4 48171362 48171461 -136117201 - MER82 DNA MER2_type -550 103 5 198 333 41 97 chr4 48171621 48171888 -136116774 - L2 LINE L2 -5 3267 3016 423 301 108 33 chr4 48172335 48172667 -136115995 - L2 LINE L2 -821 2493 2137 235 362 85 34 chr4 48173891 48174068 -136114594 - MIR SINE MIR -56 206 21 5741 145 17 3 chr4 48174383 48175349 -136113313 + L1MA4 LINE L1 5317 6295 -5 497 316 92 40 chr4 48175956 48176282 -136112380 - L1ME3A LINE L1 -275 5891 5549 23 54 0 0 chr4 48176493 48176530 -136112132 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr4 48177363 48177398 -136111264 + AT_rich Low_complexity Low_complexity 1 35 0 304 279 54 23 chr4 48177665 48177794 -136110868 + L1 LINE L1 4287 4419 -1727 297 315 20 14 chr4 48177862 48178008 -136110654 - MLT1J LTR MaLR -232 279 133 263 229 29 14 chr4 48178008 48178078 -136110584 - Tigger5 DNA MER2_type -2 2321 2251 517 285 7 15 chr4 48178095 48178232 -136110430 - MLT1J LTR MaLR -375 136 1 414 167 8 17 chr4 48179509 48179629 -136109033 + GA-rich Low_complexity Low_complexity 1 119 0 313 320 121 43 chr4 48179730 48180052 -136108610 - L2 LINE L2 -23 3290 2944 180 0 0 0 chr4 48180109 48180129 -136108533 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1847 148 10 16 chr4 48180351 48180656 -136108006 - AluSx SINE Alu -9 303 1 1264 271 89 23 chr4 48180661 48180984 -136107678 + LTR33 LTR ERVL 4 369 -152 1956 195 94 13 chr4 48180984 48181451 -136107211 + MLT1D LTR MaLR 1 505 0 1264 271 89 23 chr4 48181451 48181600 -136107062 + LTR33 LTR ERVL 369 507 -14 444 308 85 81 chr4 48182165 48182412 -136106250 + L2 LINE L2 3025 3272 0 254 341 85 31 chr4 48183375 48183504 -136105158 - L2 LINE L2 0 3272 3137 500 129 0 0 chr4 48184470 48184555 -136104107 - L1MB8 LINE L1 -1 6177 6093 2242 202 6 8 chr4 48184572 48185062 -136103600 - L1MB4 LINE L1 -6 6174 5686 306 164 0 0 chr4 48186183 48186238 -136102424 + (CATATA)n Simple_repeat Simple_repeat 6 60 0 190 273 91 15 chr4 48186355 48186421 -136102241 + MIR SINE MIR 32 102 -160 2273 111 16 35 chr4 48188149 48188518 -136100144 - THE1B LTR MaLR -2 362 1 213 65 0 0 chr4 48188523 48188554 -136100108 + (TTAGGG)n Simple_repeat Simple_repeat 1 31 0 182 267 22 0 chr4 48190542 48190587 -136098075 + L2 LINE L2 3226 3271 -1 2054 138 13 39 chr4 48190610 48190995 -136097667 - THE1C LTR MaLR 0 375 1 23 54 0 0 chr4 48191313 48191350 -136097312 + AT_rich Low_complexity Low_complexity 1 37 0 2428 296 59 7 chr4 48192624 48193399 -136095263 + L2 LINE L2 687 1502 -1812 3334 204 31 89 chr4 48193401 48193949 -136094713 - MLT1-int LTR MaLR -446 925 458 1834 141 57 43 chr4 48193949 48194319 -136094343 + THE1C LTR MaLR 1 375 0 3334 204 31 89 chr4 48194319 48194750 -136093912 - MLT1-int LTR MaLR -913 458 3 282 339 54 23 chr4 48195274 48195404 -136093258 - L2 LINE L2 0 3272 3139 214 216 0 20 chr4 48196111 48196162 -136092500 - L2 LINE L2 -97 3216 3167 269 338 224 0 chr4 48197105 48197306 -136091356 + MIR SINE MIR 1 246 -16 209 119 24 0 chr4 48197319 48197361 -136091301 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 1233 13 13 6 chr4 48197532 48197688 -136090974 + (TCTA)n Simple_repeat Simple_repeat 4 160 0 2296 60 3 3 chr4 48197688 48197972 -136090690 - AluY SINE Alu -27 284 1 372 290 11 0 chr4 48198029 48198122 -136090540 + MER69 DNA AcHobo 3 96 -2430 418 272 136 0 chr4 48199424 48199571 -136089091 - MIR SINE MIR -12 250 84 1699 109 120 4 chr4 48199637 48199904 -136088758 + AluSp SINE Alu 1 298 -15 207 0 0 0 chr4 48199908 48199931 -136088731 + (CAA)n Simple_repeat Simple_repeat 2 24 0 203 194 0 0 chr4 48200388 48200424 -136088238 + (TA)n Simple_repeat Simple_repeat 1 36 0 522 29 0 0 chr4 48200585 48200655 -136088007 + L1MA3 LINE L1 6236 6305 0 44047 40 4 1 chr4 48201038 48207172 -136081490 - L1PA3 LINE L1 -3 6152 2 2091 113 10 0 chr4 48207850 48208143 -136080519 + AluSp SINE Alu 1 296 -17 207 0 0 0 chr4 48208151 48208174 -136080488 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1278 227 59 50 chr4 48208306 48208663 -136079999 + MSTD LTR MaLR 35 394 -2 2037 137 76 17 chr4 48208915 48209259 -136079403 - THE1B LTR MaLR 0 364 1 11372 96 3 8 chr4 48209259 48210843 -136077819 - THE1B-int LTR MaLR 0 1580 4 1514 151 190 19 chr4 48210845 48211156 -136077506 - THE1B LTR MaLR 0 364 1 22 0 0 0 chr4 48212321 48212343 -136076319 + AT_rich Low_complexity Low_complexity 1 22 0 512 269 192 0 chr4 48212397 48212605 -136076057 + MIR SINE MIR 14 261 -1 2161 107 0 0 chr4 48212725 48213005 -136075657 + AluY SINE Alu 1 280 -31 312 91 0 0 chr4 48213005 48213049 -136075613 + (TAG)n Simple_repeat Simple_repeat 1 44 0 1435 297 83 34 chr4 48213154 48213717 -136074945 - MLT1E LTR MaLR -2 591 1 212 333 65 28 chr4 48213771 48213879 -136074783 - L2 LINE L2 -250 3022 2911 195 42 0 0 chr4 48214136 48214160 -136074502 + (TC)n Simple_repeat Simple_repeat 1 24 0 25 0 0 0 chr4 48214921 48214946 -136073716 + AT_rich Low_complexity Low_complexity 1 25 0 532 295 115 5 chr4 48215481 48215681 -136072981 - MIR SINE MIR -28 234 13 201 39 0 0 chr4 48217078 48217104 -136071558 + (TC)n Simple_repeat Simple_repeat 2 27 0 203 135 54 0 chr4 48217104 48217141 -136071521 + (CATA)n Simple_repeat Simple_repeat 2 40 0 23 54 0 0 chr4 48217198 48217235 -136071427 + AT_rich Low_complexity Low_complexity 1 37 0 1504 181 4 19 chr4 48217651 48217922 -136070740 - Tigger7 DNA MER2_type -283 267 1 1157 331 107 47 chr4 48217924 48218680 -136069982 + L2 LINE L2 2004 2713 -559 16629 129 26 9 chr4 48218680 48220006 -136068656 - Tigger4(Zombi) DNA MER2_type 0 2731 1429 275 0 0 28 chr4 48220006 48220042 -136068620 + (TTA)n Simple_repeat Simple_repeat 3 37 0 1808 149 7 3 chr4 48220045 48220327 -136068335 - AluSx SINE Alu -29 283 1 16629 129 26 9 chr4 48220327 48221680 -136066982 - Tigger4(Zombi) DNA MER2_type -1303 1428 2 1157 331 107 47 chr4 48221680 48222118 -136066544 + L2 LINE L2 2713 3272 0 2232 114 7 0 chr4 48222304 48222610 -136066052 + AluSx SINE Alu 2 309 -3 444 293 78 29 chr4 48223337 48223542 -136065120 + MIR SINE MIR 1 215 -47 382 324 28 21 chr4 48225259 48225401 -136063261 + MIR3 SINE MIR 56 198 -10 212 286 0 0 chr4 48226205 48226261 -136062401 + L2 LINE L2 3186 3241 -72 1596 197 39 11 chr4 48226572 48226927 -136061735 + MLT1A1 LTR MaLR 1 365 0 297 0 0 0 chr4 48227469 48227502 -136061160 + (TG)n Simple_repeat Simple_repeat 1 33 0 350 349 52 31 chr4 48227557 48227749 -136060913 + MIR SINE MIR 11 206 -56 339 85 0 0 chr4 48227755 48227802 -136060860 + (CA)n Simple_repeat Simple_repeat 2 48 0 221 261 173 84 chr4 48228052 48228301 -136060361 + L2 LINE L2 3043 3313 0 221 274 0 16 chr4 48229404 48229466 -136059196 - MIR SINE MIR -7 255 195 2110 129 0 16 chr4 48229492 48229803 -136058859 - AluSx SINE Alu -6 306 1 653 235 105 178 chr4 48229806 48230083 -136058579 + L2 LINE L2 202 498 -2816 551 188 21 0 chr4 48230083 48230179 -136058483 - AluSg/x SINE Alu -30 279 182 653 235 105 178 chr4 48230179 48230585 -136058077 + L2 LINE L2 498 923 -2391 577 262 6 12 chr4 48230585 48230753 -136057909 + L2 LINE L2 1905 2071 -1243 327 246 23 146 chr4 48230767 48230938 -136057724 + MIR SINE MIR 63 212 -50 796 298 61 8 chr4 48230955 48231217 -136057445 + L2 LINE L2 2084 2359 -955 231 36 0 0 chr4 48233073 48233101 -136055561 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 490 285 44 13 chr4 48233122 48233280 -136055382 + MER5A DNA MER1_type 9 171 -18 1998 130 0 4 chr4 48233618 48233894 -136054768 - AluSq SINE Alu -38 275 1 607 203 22 14 chr4 48234416 48234554 -136054108 - MER5B DNA MER1_type 0 178 40 187 348 71 9 chr4 48235192 48235304 -136053358 + MIR SINE MIR 11 129 -133 378 344 70 31 chr4 48236418 48236645 -136052017 - L3 LINE CR1 -14 1563 1328 222 253 53 53 chr4 48236637 48236732 -136051930 + L2 LINE L2 3218 3312 -1 * 1722 212 29 74 chr4 48236763 48237249 -136051413 + MLT2B1 LTR ERVL 1 464 -56 257 155 26 39 chr4 48237331 48237486 -136051176 + (TA)n Simple_repeat Simple_repeat 2 154 0 202 178 41 27 chr4 48237670 48237743 -136050919 + (TA)n Simple_repeat Simple_repeat 2 75 0 35 41 0 0 chr4 48237763 48237812 -136050850 + AT_rich Low_complexity Low_complexity 1 49 0 258 327 30 10 chr4 48238010 48238111 -136050551 - L3 LINE CR1 -474 1103 1001 4001 48 0 0 chr4 48238253 48238751 -136049911 - L1PA4 LINE L1 0 6155 5658 3119 27 0 3 chr4 48238751 48239352 -136049310 + L1PA4 LINE L1 5034 5633 -522 772 196 0 0 chr4 48239841 48239974 -136048688 - FLAM_A SINE Alu 0 133 1 330 325 48 24 chr4 48240161 48240287 -136048375 - L2 LINE L2 -8 3264 3136 2089 188 5 14 chr4 48240322 48240557 -136048105 - MLT1A1 LTR MaLR 0 365 133 3506 157 83 18 chr4 48240557 48241218 -136047444 - MER44D DNA MER2_type -1 704 1 2089 188 5 14 chr4 48241218 48241350 -136047312 - MLT1A1 LTR MaLR -232 133 1 1488 323 67 41 chr4 48241390 48241734 -136046928 - L2 LINE L2 -196 3076 2742 2176 122 0 0 chr4 48241734 48242029 -136046633 - AluSg SINE Alu -15 295 1 1488 323 67 41 chr4 48242029 48242541 -136046121 - L2 LINE L2 -530 2742 2204 374 285 71 71 chr4 48242541 48242937 -136045725 - L2 LINE L2 -1408 1906 1511 2024 124 7 0 chr4 48244172 48244488 -136044174 - AluSx SINE Alu 0 325 8 326 360 22 7 chr4 48244563 48244699 -136043963 + MIR SINE MIR 41 178 -84 1785 75 0 0 chr4 48246197 48246425 -136042237 + AluY SINE Alu 83 310 -1 2496 186 27 41 chr4 48247176 48247767 -136040895 + L1 LINE L1 3336 3918 -2228 461 172 11 0 chr4 48247769 48247856 -136040806 + L1 LINE L1 4054 4141 -2005 247 275 12 12 chr4 48247866 48247946 -136040716 + (TATATG)n Simple_repeat Simple_repeat 5 84 0 324 0 0 0 chr4 48248293 48248329 -136040333 + (TA)n Simple_repeat Simple_repeat 2 37 0 24 0 0 0 chr4 48249272 48249296 -136039366 + AT_rich Low_complexity Low_complexity 1 24 0 705 314 52 0 chr4 48249958 48250206 -136038456 - MIR SINE MIR 0 262 2 348 307 37 54 chr4 48250305 48250744 -136037918 + L1MEd LINE L1 897 1427 -1063 564 175 0 0 chr4 48251621 48251718 -136036944 - FLAM_A SINE Alu -13 129 33 1582 36 0 5 chr4 48252137 48252331 -136036331 - L1PA7 LINE L1 -407 5747 5555 2707 62 88 0 chr4 48252331 48252704 -136035958 + L1PA7 LINE L1 5745 6151 -3 440 283 99 54 chr4 48253431 48253654 -136035008 - MIR SINE MIR -12 250 18 214 191 0 0 chr4 48253815 48253857 -136034805 + A-rich Low_complexity Low_complexity 1 42 0 291 380 41 0 chr4 48253881 48254002 -136034660 - MIR SINE MIR -76 186 61 331 281 72 48 chr4 48254165 48254332 -136034330 - L3 LINE CR1 -213 1364 1194 336 302 60 34 chr4 48254464 48254613 -136034049 - L3 LINE CR1 -373 1204 1052 512 299 57 17 chr4 48254636 48254813 -136033849 + MIR SINE MIR 7 190 -72 969 281 123 20 chr4 48254900 48255306 -136033356 + L2 LINE L2 2065 2512 -802 675 207 7 14 chr4 48256317 48256486 -136032176 + FLAM_C SINE Alu 1 168 0 1040 100 11 11 chr4 48256486 48256604 -136032058 + (GGAA)n Simple_repeat Simple_repeat 1 298 0 1040 100 11 11 chr4 48256604 48256784 -136031878 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 407 280 0 0 chr4 48256932 48257039 -136031623 - Tigger5 DNA MER2_type 0 2323 2217 1261 191 43 39 chr4 48257309 48257591 -136031071 + AluJo SINE Alu 1 283 -29 1959 129 0 0 chr4 48258762 48259042 -136029620 + AluSx SINE Alu 31 310 -2 23 0 0 0 chr4 48259961 48259984 -136028678 + AT_rich Low_complexity Low_complexity 1 23 0 274 211 0 28 chr4 48260331 48260402 -136028260 + T-rich Low_complexity Low_complexity 2 70 0 468 51 0 0 chr4 48261234 48261293 -136027369 + (TG)n Simple_repeat Simple_repeat 2 60 0 2276 91 3 3 chr4 48261872 48262169 -136026493 + AluSq SINE Alu 1 297 -16 764 251 68 4 chr4 48262295 48262530 -136026132 + L1MC5 LINE L1 6973 7222 -739 1937 184 2 85 chr4 48262530 48262955 -136025707 + MLT1B LTR MaLR 1 390 0 262 189 33 122 chr4 48263056 48263146 -136025516 + L1MC5 LINE L1 7250 7331 -630 238 267 15 74 chr4 48263213 48263348 -136025314 + L1MC5 LINE L1 7452 7578 -383 269 351 9 0 chr4 48263403 48263517 -136025145 + MIR SINE MIR 131 245 -17 1223 223 66 31 chr4 48263711 48264092 -136024570 - MSTD LTR MaLR -2 394 1 399 152 0 13 chr4 48264884 48264963 -136023699 - MER53 DNA DNA 0 189 112 * 2267 169 25 34 chr4 48264962 48265406 -136023256 - Tigger2 DNA MER2_type -6 2712 2273 319 188 14 14 chr4 48265396 48265465 -136023197 - Tigger2 DNA MER2_type -2649 69 1 * 1819 156 34 42 chr4 48267436 48267814 -136020848 + THE1C LTR MaLR 1 375 0 343 313 148 0 chr4 48267816 48267944 -136020718 - MIR3 SINE MIR -32 176 30 1051 197 24 0 chr4 48267969 48268177 -136020485 - L1PA16 LINE L1 -2 6164 5952 185 250 15 73 chr4 48268208 48268276 -136020386 + L2 LINE L2 3203 3266 -6 247 415 8 8 chr4 48268495 48268618 -136020044 - MIR SINE MIR -70 138 16 536 308 47 12 chr4 48268932 48269104 -136019558 + MIR3 SINE MIR 2 179 -29 1492 212 0 21 chr4 48270581 48270920 -136017742 + AluJb SINE Alu 1 333 0 225 311 108 54 chr4 48272285 48272365 -136016297 + MIR SINE MIR 41 115 -147 1376 207 13 22 chr4 48272365 48272679 -136015983 - AluJo SINE Alu -1 311 1 225 311 108 54 chr4 48272679 48272765 -136015897 + MIR SINE MIR 115 216 -46 805 118 99 6 chr4 48273242 48273403 -136015259 + L1MA8 LINE L1 6112 6287 -4 2015 129 7 3 chr4 48274690 48274984 -136013678 - AluSx SINE Alu -14 298 4 971 205 5 19 chr4 48275123 48275328 -136013334 + MER20 DNA MER1_type 18 219 0 2114 160 30 5 chr4 48275331 48275724 -136012938 + L1M1 LINE L1 5380 5782 -518 270 0 0 0 chr4 48275727 48275757 -136012905 + (TA)n Simple_repeat Simple_repeat 2 31 0 181 258 0 140 chr4 48277121 48277214 -136011448 - MIR3 SINE MIR -31 177 98 285 326 70 39 chr4 48278416 48278545 -136010117 - L2 LINE L2 0 3272 3140 332 246 36 65 chr4 48278552 48278690 -136009972 + LTR33A LTR ERVL 375 508 -15 190 320 169 67 chr4 48279205 48279383 -136009279 + L2 LINE L2 3077 3272 0 22 0 0 0 chr4 48279689 48279711 -136008951 + AT_rich Low_complexity Low_complexity 1 22 0 367 337 27 4 chr4 48281058 48281286 -136007376 - L1MC4a LINE L1 -360 5810 5679 546 57 0 0 chr4 48281293 48281363 -136007299 + (TG)n Simple_repeat Simple_repeat 1 70 0 443 18 18 0 chr4 48281450 48281506 -136007156 + (TG)n Simple_repeat Simple_repeat 2 58 0 261 359 63 19 chr4 48282147 48282306 -136006356 + MIR SINE MIR 40 205 -57 252 353 89 22 chr4 48282470 48282694 -136005968 - MIR SINE MIR -19 243 5 474 331 170 36 chr4 48283372 48283930 -136004732 + L2 LINE L2 2345 2977 -337 276 320 115 8 chr4 48284116 48284238 -136004424 + L2 LINE L2 3179 3313 0 26 30 0 0 chr4 48284583 48284616 -136004046 + AT_rich Low_complexity Low_complexity 1 33 0 186 263 0 0 chr4 48285340 48285397 -136003265 + GA-rich Low_complexity Low_complexity 2 58 0 371 338 42 25 chr4 48286941 48287153 -136001509 + MIR SINE MIR 1 260 -2 563 223 31 15 chr4 48287307 48287437 -136001225 + MLT1C LTR MaLR 331 462 -5 366 326 62 0 chr4 48287680 48287809 -136000853 - L2 LINE L2 0 3313 3177 196 329 13 0 chr4 48287791 48287870 -136000792 - L2 LINE L2 -349 2965 2886 * 447 333 83 48 chr4 48288870 48289290 -135999372 + L2 LINE L2 2449 2883 -431 322 272 144 39 chr4 48289543 48289723 -135998939 + L2 LINE L2 3107 3305 -8 441 0 0 0 chr4 48291533 48291582 -135997080 + (TG)n Simple_repeat Simple_repeat 2 50 0 522 232 218 0 chr4 48291798 48291940 -135996722 + MER5A DNA MER1_type 12 184 -5 212 329 58 51 chr4 48292042 48292179 -135996483 + MER5A DNA MER1_type 45 182 -7 791 286 43 86 chr4 48292747 48293260 -135995402 - MLT1K LTR MaLR 0 588 98 21 0 0 0 chr4 48294825 48294846 -135993816 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 48295139 48295163 -135993499 + AT_rich Low_complexity Low_complexity 1 24 0 1625 188 0 3 chr4 48295402 48295684 -135992978 + AluJo SINE Alu 19 299 -13 224 338 14 14 chr4 48295700 48295774 -135992888 - L2 LINE L2 -247 3025 2952 380 367 49 8 chr4 48295860 48296127 -135992535 - L2 LINE L2 -535 2779 2502 1366 192 62 4 chr4 48296546 48296698 -135991964 - AluJo SINE Alu -20 292 150 180 0 0 0 chr4 48296698 48296718 -135991944 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1366 192 62 4 chr4 48296718 48296841 -135991821 - AluJo SINE Alu -162 150 1 1781 217 75 2 chr4 48297740 48298164 -135990498 + L1MC4 LINE L1 7224 7678 -364 613 328 50 47 chr4 48298474 48298815 -135989847 - L2 LINE L2 -37 3276 2935 576 40 0 0 chr4 48299224 48299299 -135989363 + (CAAAC)n Simple_repeat Simple_repeat 1 75 0 446 148 0 12 chr4 48300091 48300172 -135988490 + MADE1 DNA Mariner 1 80 0 2129 103 14 0 chr4 48300218 48300510 -135988152 + AluSx SINE Alu 1 296 -16 453 274 0 10 chr4 48300823 48300925 -135987737 - L2 LINE L2 -13 3300 3200 187 331 169 0 chr4 48301115 48301251 -135987411 - L2 LINE L2 -218 3054 2896 306 346 92 28 chr4 48301391 48301674 -135986988 - L2 LINE L2 -428 2886 2586 471 355 27 75 chr4 48301825 48302265 -135986397 + L2 LINE L2 2854 3272 0 488 180 25 41 chr4 48303101 48303245 -135985417 - L1ME1 LINE L1 -199 5967 5829 453 282 62 4 chr4 48303310 48303537 -135985125 - L1MEc LINE L1 -2982 3400 3161 * 618 273 117 18 chr4 48303533 48303917 -135984745 - L1MEc LINE L1 -3949 2614 2193 287 300 20 20 chr4 48303917 48304017 -135984645 - MIR SINE MIR -98 164 65 246 268 0 0 chr4 48304357 48304413 -135984249 + (TA)n Simple_repeat Simple_repeat 2 57 0 2436 164 62 4 chr4 48305139 48305639 -135983023 - L1MA9 LINE L1 -1 6311 5783 230 216 108 0 chr4 48305640 48305714 -135982948 + L1MC4 LINE L1 6617 6698 -1344 233 231 62 0 chr4 48305768 48305833 -135982829 - L1P5 LINE L1 -363 5791 5723 2699 13 0 0 chr4 48305864 48306163 -135982499 + AluYa5 SINE Alu 1 299 -12 26 64 0 0 chr4 48306211 48306258 -135982404 + AT_rich Low_complexity Low_complexity 1 47 0 2331 239 54 15 chr4 48306261 48307432 -135981230 - L1M3c LINE L1 -4519 1794 795 260 170 21 0 chr4 48307705 48307752 -135980910 + MER4-int LTR ERV1 1107 1154 -5444 547 14 92 39 chr4 48307753 48308037 -135980625 + (TA)n Simple_repeat Simple_repeat 1 299 0 2375 95 3 0 chr4 48508136 48508442 -135780220 + AluSg SINE Alu 1 307 -3 2205 112 3 13 chr4 48508852 48509164 -135779498 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr4 48509175 48509196 -135779466 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr4 48509241 48509262 -135779400 + (A)n Simple_repeat Simple_repeat 1 21 0 1772 148 0 53 chr4 48509405 48509708 -135778954 - AluSx SINE Alu -25 287 1 211 328 83 9 chr4 48509723 48509835 -135778827 - MIR SINE MIR -51 157 74 592 196 9 0 chr4 48509990 48510102 -135778560 - MER81 DNA DNA 0 114 2 440 219 0 0 chr4 48510226 48510308 -135778354 + MIR SINE MIR 42 123 -139 1187 210 52 36 chr4 48510308 48510516 -135778146 - MLT1A1 LTR MaLR 0 365 149 2407 29 0 0 chr4 48510516 48510793 -135777869 - AluYa5 SINE Alu -5 306 30 1187 210 52 36 chr4 48510793 48510893 -135777769 - MLT1A1 LTR MaLR -216 149 52 263 280 21 0 chr4 48511043 48511136 -135777526 + L1MC/D LINE L1 5792 5886 -1922 504 309 22 17 chr4 48511404 48511582 -135777080 - MIR SINE MIR -25 237 59 26 82 0 0 chr4 48511713 48511774 -135776888 + AT_rich Low_complexity Low_complexity 1 61 0 387 245 125 68 chr4 48511780 48512055 -135776607 + MLT1G1 LTR MaLR 1 307 -235 378 230 140 0 chr4 48512077 48512177 -135776485 + MLT1G1 LTR MaLR 411 524 -66 233 19 19 75 chr4 48512186 48512239 -135776423 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 990 186 0 5 chr4 48512346 48512534 -135776128 + MLT2D LTR ERVL 1 187 -227 7086 15 0 0 chr4 48512534 48513379 -135775283 - L1PA2 LINE L1 -4 6151 5307 282 278 35 9 chr4 48513382 48513497 -135775165 + MLT2D LTR ERVL 190 307 -90 1714 186 46 11 chr4 48514432 48514782 -135773880 - MLT1A1 LTR MaLR 0 365 4 2143 120 45 31 chr4 48515311 48515669 -135772993 - THE1B LTR MaLR -1 363 1 1644 191 41 33 chr4 48515736 48516103 -135772559 - MLT1A2 LTR MaLR 0 374 5 231 214 0 0 chr4 48516274 48516316 -135772346 + MER82 DNA MER2_type 612 653 0 198 316 97 35 chr4 48517082 48517196 -135771466 - L2 LINE L2 -4 3309 3189 408 281 79 0 chr4 48517251 48517365 -135771297 + L2 LINE L2 3191 3313 0 656 272 67 0 chr4 48517392 48517598 -135771064 - MIR SINE MIR -3 259 41 785 302 112 33 chr4 48517778 48518327 -135770335 + L2 LINE L2 2669 3307 -6 385 263 95 15 chr4 48518606 48518743 -135769919 - MER5B DNA MER1_type -3 175 28 267 300 43 50 chr4 48519031 48519171 -135769491 - L2 LINE L2 -35 3278 3140 1758 168 20 23 chr4 48519199 48519503 -135769159 - AluJo SINE Alu -9 303 1 762 182 6 11 chr4 48519562 48519743 -135768919 + CT-rich Low_complexity Low_complexity 1 180 0 2069 61 0 26 chr4 48520125 48520389 -135768273 + AluY SINE Alu 50 306 -5 1293 121 0 0 chr4 48520745 48520918 -135767744 + AluSg/x SINE Alu 130 302 -8 2044 138 3 0 chr4 48520988 48521284 -135767378 + AluSq SINE Alu 1 297 -16 2269 123 0 0 chr4 48522181 48522489 -135766173 - AluSq SINE Alu -5 308 1 6698 78 39 0 chr4 48522538 48523695 -135764967 - L1PA11 LINE L1 0 6174 4999 395 265 109 83 chr4 48525050 48525280 -135763382 + MIR SINE MIR 22 257 -5 629 244 86 10 chr4 48525284 48525493 -135763169 - MIR SINE MIR 0 262 38 183 269 0 19 chr4 48526322 48526374 -135762288 + L2 LINE L2 3256 3306 -7 2191 130 0 0 chr4 48526769 48527077 -135761585 - AluSx SINE Alu -4 308 1 668 254 117 10 chr4 48527123 48527320 -135761342 + MIR SINE MIR 2 219 -43 760 109 0 0 chr4 48528911 48529021 -135759641 - L1PA5 LINE L1 -4 6150 6041 28 61 0 0 chr4 48530083 48530132 -135758530 + AT_rich Low_complexity Low_complexity 1 49 0 606 229 98 6 chr4 48530658 48530905 -135757757 - MER46C DNA MER2_type -26 312 1 194 172 35 69 chr4 48532597 48532655 -135756007 - MIR SINE MIR -74 188 133 1327 114 16 102 chr4 48532714 48532968 -135755694 - AluJb SINE Alu -16 296 65 1838 88 4 25 chr4 48533426 48533692 -135754970 + AluSx SINE Alu 50 310 0 531 174 82 0 chr4 48534281 48534379 -135754283 - AluJb SINE Alu -33 279 174 2642 72 44 6 chr4 48534420 48534781 -135753881 + THE1C LTR MaLR 1 375 0 513 287 123 27 chr4 48535501 48535762 -135752900 + L2 LINE L2 1890 2175 -1139 252 0 0 0 chr4 48535990 48536018 -135752644 + (TC)n Simple_repeat Simple_repeat 2 29 0 198 0 0 0 chr4 48536017 48536039 -135752623 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 297 324 108 44 chr4 48537371 48537575 -135751087 + L3 LINE CR1 1175 1391 -186 281 329 91 29 chr4 48537944 48538187 -135750475 + L2 LINE L2 3044 3301 -12 195 276 86 0 chr4 48538278 48538336 -135750326 - MIR SINE MIR -115 93 31 229 295 133 60 chr4 48538583 48538749 -135749913 + MIR SINE MIR 26 203 -59 1932 153 11 0 chr4 48539593 48539904 -135748758 - AluSx SINE Alu 0 314 1 384 327 123 6 chr4 48540442 48540604 -135748058 - MIR3 SINE MIR -12 196 16 1030 155 0 44 chr4 48540625 48540831 -135747831 - MER20 DNA MER1_type -1 218 22 1911 148 0 20 chr4 48541043 48541346 -135747316 + AluJb SINE Alu 1 297 -15 21 0 0 0 chr4 48541582 48541603 -135747059 + AT_rich Low_complexity Low_complexity 1 21 0 724 312 51 4 chr4 48541948 48542182 -135746480 - MIR SINE MIR -15 247 3 258 234 0 0 chr4 48542373 48542420 -135746242 - L2 LINE L2 -18 3254 3208 437 270 9 9 chr4 48542481 48542592 -135746070 + MER5B DNA MER1_type 1 111 -67 306 235 43 61 chr4 48544351 48544466 -135744196 + MER103 DNA DNA 42 154 -12 497 277 43 25 chr4 48546628 48546910 -135741752 + L1ME4a LINE L1 5575 5861 -260 330 209 82 36 chr4 48546981 48547091 -135741571 + L1ME4a LINE L1 6007 6121 0 279 54 0 0 chr4 48547185 48547222 -135741440 + (TG)n Simple_repeat Simple_repeat 2 38 0 249 304 49 39 chr4 48547364 48547466 -135741196 + L2 LINE L2 3153 3255 -17 525 240 25 0 chr4 48549105 48549226 -135739436 - L2 LINE L2 -1 3312 3189 2135 128 3 13 chr4 48550157 48550470 -135738192 + AluSx SINE Alu 1 310 -2 25 31 0 0 chr4 48550765 48550797 -135737865 + AT_rich Low_complexity Low_complexity 1 32 0 1082 271 70 64 chr4 48550820 48551426 -135737236 - L2 LINE L2 -81 3232 2619 1935 176 21 0 chr4 48551476 48551816 -135736846 + MER7A DNA MER2_type 2 346 0 472 240 34 48 chr4 48552201 48552347 -135736315 + L2 LINE L2 3170 3313 0 7128 131 29 1 chr4 48552579 48553774 -135734888 - L1P LINE L1 -1385 4761 3533 397 298 30 18 chr4 48553859 48554027 -135734635 - Charlie8 DNA MER1_type -2178 239 70 348 311 34 46 chr4 48554090 48554306 -135734356 - MIR SINE MIR -46 216 5 2252 110 0 0 chr4 48554769 48555061 -135733601 + AluSg SINE Alu 5 296 -14 3978 15 0 0 chr4 48555109 48555563 -135733099 + L1PA2 LINE L1 5701 6154 -1 2126 118 0 19 chr4 48555777 48556091 -135732571 - AluSq SINE Alu -5 308 1 2822 294 81 81 chr4 48556351 48557008 -135731654 - L2 LINE L2 -6 3307 2651 1591 204 138 15 chr4 48557008 48557420 -135731242 + MLT1C LTR MaLR 3 465 -2 2822 294 81 81 chr4 48557420 48558918 -135729744 - L2 LINE L2 -662 2651 1150 233 241 98 54 chr4 48559341 48559453 -135729209 + L3 LINE CR1 293 409 -1168 2301 108 10 0 chr4 48559645 48559952 -135728710 + AluSq SINE Alu 1 310 -3 252 86 0 0 chr4 48559953 48559988 -135728674 + (GGAAA)n Simple_repeat Simple_repeat 1 35 0 2483 71 3 0 chr4 48560130 48560438 -135728224 + AluY SINE Alu 1 309 -2 272 271 47 28 chr4 48561803 48561910 -135726752 - L2 LINE L2 -223 3049 2941 422 294 109 16 chr4 48563459 48563643 -135725019 + MIR SINE MIR 12 212 -50 6766 130 21 0 chr4 48566481 48568182 -135720480 - L1MA3 LINE L1 -2 7722 5980 2474 162 16 14 chr4 48568182 48568607 -135720055 + MSTB LTR MaLR 1 426 0 5291 174 150 50 chr4 48568609 48570044 -135718618 + MSTB-int LTR MaLR 3 1580 0 2027 135 108 42 chr4 48570044 48570398 -135718264 + MSTB LTR MaLR 1 385 -41 2427 87 0 6 chr4 48570398 48570710 -135717952 - AluY SINE Alu -1 310 1 2027 135 108 42 chr4 48570710 48570755 -135717907 + MSTB LTR MaLR 385 426 0 5846 186 10 13 chr4 48570757 48571508 -135717154 - L1MA3 LINE L1 -1583 5982 5234 2225 120 0 0 chr4 48571508 48571809 -135716853 + AluSq SINE Alu 3 303 -10 5846 186 10 13 chr4 48571809 48572307 -135716355 - L1MA3 LINE L1 -2331 5234 4736 8532 134 29 21 chr4 48572307 48573707 -135714955 - L1MA3 LINE L1 -6142 1423 13 21 36 0 0 chr4 48573709 48573737 -135714925 + AT_rich Low_complexity Low_complexity 1 28 0 1704 144 31 34 chr4 48574638 48574964 -135713698 - MER44D DNA MER2_type -8 601 7 26 0 0 0 chr4 48575023 48575049 -135713613 + AT_rich Low_complexity Low_complexity 1 26 0 223 306 28 0 chr4 48578306 48578378 -135710284 + MIR SINE MIR 45 118 -90 338 313 0 18 chr4 48579519 48579631 -135709031 + MER81 DNA DNA 1 110 -4 686 268 26 41 chr4 48580022 48580216 -135708446 - MIR SINE MIR -69 193 3 313 331 93 6 chr4 48580256 48580428 -135708234 + MIR SINE MIR 45 231 -31 201 74 0 0 chr4 48580436 48580463 -135708199 + (TTA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr4 48581973 48581995 -135706667 + AT_rich Low_complexity Low_complexity 1 22 0 333 237 88 9 chr4 48582057 48582171 -135706491 + MIR SINE MIR 130 252 -10 259 167 0 0 chr4 48582174 48582216 -135706446 - MLT1C LTR MaLR 0 467 426 2639 199 40 49 chr4 48582217 48582911 -135705751 - MLT1D-int LTR MaLR -511 860 173 513 266 222 12 chr4 48582925 48583335 -135705327 + L1M4 LINE L1 3809 4304 -1842 * 782 173 18 18 chr4 48583332 48583500 -135705162 - MLT1D-int LTR MaLR -1203 168 1 1570 234 82 19 chr4 48583500 48583974 -135704688 - MLT1D LTR MaLR 0 505 2 947 243 24 0 chr4 48584260 48584466 -135704196 - MER58A DNA MER1_type -8 216 6 299 203 54 14 chr4 48584742 48584816 -135703846 + MLT1J LTR MaLR 1 77 -434 825 222 135 24 chr4 48584986 48585313 -135703349 + MLT1A1 LTR MaLR 1 396 0 304 284 0 68 chr4 48585331 48585479 -135703183 + MLT1J LTR MaLR 328 465 -46 539 288 32 48 chr4 48586216 48586466 -135702196 + MLT1I LTR MaLR 2 247 -162 6145 86 8 9 chr4 48586619 48587491 -135701171 + L1MA1 LINE L1 5428 6298 -4 658 247 82 13 chr4 48587630 48587861 -135700801 + MER113 DNA MER1_type? 275 521 0 2327 85 0 25 chr4 48588153 48588472 -135700190 + AluY SINE Alu 1 311 0 579 284 19 13 chr4 48589538 48589693 -135698969 - L2 LINE L2 0 3272 3117 1548 202 28 0 chr4 48589694 48589981 -135698681 - AluJo SINE Alu -17 295 1 27 0 0 0 chr4 48589993 48590020 -135698642 + AT_rich Low_complexity Low_complexity 1 27 0 295 385 142 5 chr4 48590175 48590380 -135698282 - L2 LINE L2 -357 2957 2725 671 349 68 79 chr4 48590962 48591779 -135696883 - L3 LINE CR1 -58 1519 715 1916 169 0 3 chr4 48591779 48592069 -135696593 - AluJo SINE Alu -23 289 1 671 349 68 79 chr4 48592069 48592285 -135696377 - L3 LINE CR1 -862 715 498 253 305 121 11 chr4 48592734 48592924 -135695738 + L2 LINE L2 2494 2704 -610 266 93 70 0 chr4 48592924 48592967 -135695695 - MER75 DNA T2_type 0 504 459 571 328 119 44 chr4 48593000 48593570 -135695092 + L2 LINE L2 2702 3312 -1 438 185 37 0 chr4 48593708 48593789 -135694873 + MER117 DNA MER1_type 67 150 -47 245 271 156 57 chr4 48595291 48595413 -135693249 - MIR SINE MIR -26 182 48 457 305 43 11 chr4 48595449 48595636 -135693026 + MIR SINE MIR 70 262 0 21 0 0 0 chr4 48596231 48596252 -135692410 + AT_rich Low_complexity Low_complexity 1 21 0 451 193 88 26 chr4 48596284 48596398 -135692264 - MIR SINE MIR -23 239 119 438 296 22 15 chr4 48596984 48597119 -135691543 + MLT1K LTR MaLR 94 229 -359 32 43 0 0 chr4 48597120 48597166 -135691496 + AT_rich Low_complexity Low_complexity 1 46 0 201 98 39 20 chr4 48597197 48597248 -135691414 + (TATAA)n Simple_repeat Simple_repeat 5 56 0 346 337 34 17 chr4 48597378 48597553 -135691109 + MLT1K LTR MaLR 248 425 -163 1466 303 114 30 chr4 48597574 48597677 -135690985 + L2 LINE L2 2113 2206 -1107 2013 155 3 0 chr4 48597677 48597986 -135690676 - AluSx SINE Alu -2 310 1 1466 303 114 30 chr4 48597986 48598999 -135689663 + L2 LINE L2 2206 3312 -1 3708 185 45 67 chr4 48599866 48600010 -135688652 - L1MA10 LINE L1 0 6334 6188 324 0 0 0 chr4 48600010 48600046 -135688616 + (TG)n Simple_repeat Simple_repeat 2 37 0 3708 185 45 67 chr4 48600046 48601034 -135687628 - L1MA10 LINE L1 -146 6188 5232 668 307 61 4 chr4 48601326 48601557 -135687105 - MIR SINE MIR -1 261 18 263 301 143 19 chr4 48601604 48601863 -135686799 - L1MC/D LINE L1 -1992 5816 5526 671 179 133 0 chr4 48602169 48602320 -135686342 - MER115 DNA AcHobo -27 666 496 988 175 11 16 chr4 48602325 48602514 -135686148 - MER5A DNA MER1_type 0 189 2 606 226 26 37 chr4 48602617 48602807 -135685855 - MER20 DNA MER1_type 0 219 32 3336 107 49 8 chr4 48602808 48603315 -135685347 + MER1A DNA MER1_type 1 528 -1 230 108 27 0 chr4 48603316 48603353 -135685309 - MER20 DNA MER1_type -181 38 1 475 15 45 0 chr4 48604292 48604359 -135684303 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 2146 115 0 7 chr4 48604359 48604654 -135684008 - AluSx SINE Alu -19 293 1 23 0 0 0 chr4 48604887 48604910 -135683752 + AT_rich Low_complexity Low_complexity 1 23 0 21 89 0 0 chr4 48605547 48605603 -135683059 + AT_rich Low_complexity Low_complexity 1 56 0 2227 120 10 0 chr4 48605925 48606226 -135682436 + AluSq SINE Alu 1 304 -9 466 337 115 33 chr4 48606822 48607267 -135681395 - L2 LINE L2 -85 3228 2751 2210 134 25 27 chr4 48608036 48608401 -135680261 + THE1B LTR MaLR 1 364 0 11973 78 12 2 chr4 48608401 48609965 -135678697 + THE1B-int LTR MaLR 1 1580 0 2252 135 28 28 chr4 48609965 48610329 -135678333 + THE1B LTR MaLR 1 364 0 180 111 0 0 chr4 48610759 48610786 -135677876 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 236 305 160 46 chr4 48610918 48611049 -135677613 + L2 LINE L2 3108 3253 -19 2041 167 52 20 chr4 48611796 48612234 -135676428 + L1MB5 LINE L1 5715 6166 -8 260 324 7 50 chr4 48613719 48613858 -135674804 - L2 LINE L2 -1 3312 3180 247 147 44 88 chr4 48615308 48615376 -135673286 + MLT1L LTR MaLR 15 79 -536 329 308 142 4 chr4 48616093 48616564 -135672098 - L1ME4a LINE L1 -4 6117 5582 1029 139 0 58 chr4 48616862 48617035 -135671627 + AluSg/x SINE Alu 134 296 -16 1960 126 18 4 chr4 48617178 48617455 -135671207 + AluSx SINE Alu 1 281 -31 345 146 0 0 chr4 48617613 48617668 -135670994 - AluSg/x SINE Alu -37 265 211 198 0 0 0 chr4 48617673 48617695 -135670967 + (A)n Simple_repeat Simple_repeat 1 22 0 196 309 0 0 chr4 48618278 48618333 -135670329 + L2 LINE L2 3247 3301 -12 2425 71 0 3 chr4 48619555 48619851 -135668811 - AluY SINE Alu -16 295 1 662 241 59 68 chr4 48619930 48620370 -135668292 - L1MC5 LINE L1 -436 7525 7090 447 132 29 0 chr4 48621095 48621163 -135667499 - MER5B DNA MER1_type -6 172 103 2343 84 0 16 chr4 48621560 48621871 -135666791 - AluY SINE Alu -5 306 1 256 319 25 25 chr4 48622109 48622228 -135666434 + L2 LINE L2 3141 3259 -13 21 0 0 0 chr4 48622294 48622315 -135666347 + AT_rich Low_complexity Low_complexity 1 21 0 228 184 0 0 chr4 48622617 48622666 -135665996 + (TA)n Simple_repeat Simple_repeat 2 50 0 1769 117 120 0 chr4 48623061 48623162 -135665500 + AluSx SINE Alu 1 88 -224 432 0 0 0 chr4 48623162 48623210 -135665452 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 1769 117 120 0 chr4 48623210 48623374 -135665288 + AluSx SINE Alu 88 298 -14 942 124 5 4 chr4 48623768 48623961 -135664701 + AluSx SINE Alu 21 288 -22 187 257 57 71 chr4 48625528 48625598 -135663064 - L2 LINE L2 0 3272 3204 846 163 0 7 chr4 48625714 48625855 -135662807 - FLAM_C SINE Alu -3 140 1 219 300 29 0 chr4 48625925 48625995 -135662667 - L2 LINE L2 -282 2990 2919 482 299 68 103 chr4 48626205 48626643 -135662019 + L2 LINE L2 2846 3268 -4 529 318 45 9 chr4 48627089 48627309 -135661353 - MIR SINE MIR -31 231 4 567 309 55 9 chr4 48628286 48628506 -135660156 - MIR SINE MIR 0 262 33 1878 144 41 0 chr4 48629343 48629634 -135659028 - AluSx SINE Alu -9 303 1 935 162 7 7 chr4 48630744 48630898 -135657764 - FRAM SINE Alu -22 154 1 275 317 19 29 chr4 48631514 48631618 -135657044 + MIR3 SINE MIR 105 207 -1 4333 126 20 33 chr4 48631678 48632145 -135656517 + L1MA5 LINE L1 5546 6001 -299 2301 106 0 0 chr4 48632145 48632446 -135656216 + AluSg SINE Alu 2 302 -8 4333 126 20 33 chr4 48632446 48632743 -135655919 + L1MA5 LINE L1 6001 6300 0 282 309 32 21 chr4 48633903 48633997 -135654665 - MIR3 SINE MIR -28 180 86 273 304 31 46 chr4 48634468 48634630 -135654032 + MIR SINE MIR 45 203 -59 307 170 0 0 chr4 48634630 48634683 -135653979 + L1MB7 LINE L1 4873 4925 -1221 2274 228 64 57 chr4 48634687 48635649 -135653013 + L1MB7 LINE L1 5219 6173 -11 239 290 16 0 chr4 48636182 48636244 -135652418 - MIR3 SINE MIR -6 202 140 219 150 25 0 chr4 48638772 48638812 -135649850 + GA-rich Low_complexity Low_complexity 1 41 0 1086 31 0 0 chr4 48639890 48640020 -135648642 - L1PA7 LINE L1 0 6154 6025 297 252 145 30 chr4 48640508 48640639 -135648023 + MIR SINE MIR 72 217 -45 293 343 9 9 chr4 48642313 48642421 -135646241 + L2 LINE L2 3192 3299 -14 364 291 94 8 chr4 48644974 48645091 -135643571 - MIR SINE MIR -128 134 8 901 211 38 37 chr4 48645101 48645559 -135643103 - MLT1D LTR MaLR -1 504 1 1838 157 7 0 chr4 48646242 48646562 -135642100 - AluJb SINE Alu 0 322 1 4945 211 30 48 chr4 48646616 48647997 -135640665 - MER45R DNA AcHobo -224 1357 1 589 314 92 20 chr4 48648220 48648666 -135639996 + MLT1J LTR MaLR 1 478 -33 331 268 9 45 chr4 48649028 48649140 -135639522 + MIR SINE MIR 155 262 0 285 190 13 25 chr4 48649163 48649242 -135639420 + (TATAA)n Simple_repeat Simple_repeat 2 79 0 1827 171 0 0 chr4 48649261 48649553 -135639109 - AluJb SINE Alu -20 292 1 22 35 0 0 chr4 48650748 48650777 -135637885 + AT_rich Low_complexity Low_complexity 1 29 0 292 313 181 26 chr4 48650983 48651210 -135637452 + MIR SINE MIR 1 262 0 427 309 28 39 chr4 48651335 48651516 -135637146 - MIR3 SINE MIR 0 208 30 1138 218 18 0 chr4 48651531 48651751 -135636911 - MER58A DNA MER1_type 0 224 1 1765 140 32 7 chr4 48652294 48652579 -135636083 + AluSx SINE Alu 1 292 -20 558 308 138 10 chr4 48652701 48652990 -135635672 + L3b LINE CR1 1242 1567 -16 499 271 35 0 chr4 48655418 48655562 -135633100 + MIR SINE MIR 114 262 0 268 346 11 50 chr4 48655963 48656145 -135632517 + L2 LINE L2 2119 2293 -1021 474 233 83 0 chr4 48656314 48656434 -135632228 + L2 LINE L2 3184 3313 0 662 282 20 40 chr4 48657928 48658022 -135630640 + MIR SINE MIR 50 144 -118 1161 203 53 77 chr4 48658022 48658201 -135630461 - MLT1A2 LTR MaLR 0 374 192 183 42 0 0 chr4 48658201 48658225 -135630437 + (GA)n Simple_repeat Simple_repeat 2 25 0 1161 203 53 77 chr4 48658225 48658306 -135630356 - MLT1A2 LTR MaLR -182 192 111 2347 103 3 0 chr4 48658306 48658607 -135630055 - AluSx SINE Alu -10 302 1 1161 203 53 77 chr4 48658607 48658724 -135629938 - MLT1A2 LTR MaLR -263 111 5 662 282 20 40 chr4 48658724 48658831 -135629831 + MIR SINE MIR 144 247 -15 737 298 56 10 chr4 48659256 48659558 -135629104 + Charlie2b DNA MER1_type 1 316 -2546 291 290 58 36 chr4 48659571 48659709 -135628953 + Charlie2b DNA MER1_type 523 663 -2119 365 392 65 36 chr4 48659795 48660101 -135628561 + L1ME1 LINE L1 34 348 -6192 782 251 104 62 chr4 48660610 48660684 -135627978 + L1ME1 LINE L1 1044 1113 -5427 2363 86 7 0 chr4 48660684 48660986 -135627676 + AluY SINE Alu 1 304 -7 782 251 104 62 chr4 48660986 48661506 -135627156 + L1ME1 LINE L1 1113 1642 -4898 564 199 36 24 chr4 48661578 48661744 -135626918 + L1ME1 LINE L1 4185 4352 -2188 499 233 38 14 chr4 48661762 48661965 -135626697 - MLT1E1 LTR MaLR -422 202 1 2480 223 94 45 chr4 48661965 48663665 -135624997 + L1ME1 LINE L1 4733 6539 -21 2954 224 116 19 chr4 48663665 48664920 -135623742 + Charlie2a DNA MER1_type 1485 2860 -2 187 331 70 28 chr4 48666392 48666514 -135622148 - L2 LINE L2 -364 2950 2823 255 261 63 72 chr4 48666514 48666571 -135622091 + MER91C DNA MER1_type 1 58 -82 3378 182 72 28 chr4 48666571 48667159 -135621503 + LTR1B LTR ERV1 1 634 -192 2577 59 0 0 chr4 48667159 48667463 -135621199 + AluSg SINE Alu 1 304 -6 3378 182 72 28 chr4 48667463 48667665 -135620997 + LTR1B LTR ERV1 634 826 0 255 261 63 72 chr4 48667665 48667718 -135620944 + MER91C DNA MER1_type 58 110 -30 1849 247 94 90 chr4 48667743 48668555 -135620107 - L2 LINE L2 -525 2789 1971 2408 96 0 0 chr4 48668555 48668856 -135619806 + AluSg SINE Alu 1 301 -9 1849 247 94 90 chr4 48668856 48669024 -135619638 - L2 LINE L2 -1343 1971 1805 266 329 118 16 chr4 48669025 48669280 -135619382 - L2 LINE L2 -1066 2248 1968 620 193 66 66 chr4 48669408 48669532 -135619130 + LTR16C LTR ERVL 228 354 -137 2186 108 7 3 chr4 48669532 48669829 -135618833 - AluSx SINE Alu -14 298 1 620 193 66 66 chr4 48669829 48669948 -135618714 + LTR16C LTR ERVL 353 471 -20 363 296 112 8 chr4 48669955 48670080 -135618582 + L2 LINE L2 3133 3270 -2 260 355 28 0 chr4 48670132 48670239 -135618423 - MIR SINE MIR -61 201 92 278 302 63 32 chr4 48671091 48671217 -135617445 + MIR SINE MIR 105 234 -28 1224 146 0 60 chr4 48671666 48671899 -135616763 - MER20 DNA MER1_type 0 219 1 2127 71 11 0 chr4 48722378 48722647 -135566015 + AluSq SINE Alu 26 297 -16 3879 100 11 89 chr4 48723865 48723986 -135564676 - L1MA2 LINE L1 -61 6243 6114 2146 62 0 0 chr4 48723986 48724268 -135564394 - AluY SINE Alu 0 319 38 3879 100 11 89 chr4 48724268 48724883 -135563779 - L1MA2 LINE L1 -190 6114 5564 202 316 35 0 chr4 48725177 48725234 -135563428 - L2 LINE L2 -539 2775 2717 299 260 150 55 chr4 48726544 48726817 -135561845 - L1M4 LINE L1 -1956 4190 3892 380 290 107 22 chr4 48726822 48727420 -135561242 - L1M4 LINE L1 -2378 3768 3120 262 236 71 47 chr4 48727638 48727765 -135560897 - L1M4 LINE L1 -3330 2816 2687 1720 188 0 16 chr4 48727881 48728190 -135560472 - AluJo SINE Alu -3 309 6 242 133 100 0 chr4 48728311 48728371 -135560291 + L1MA4A LINE L1 5968 6033 -270 1116 109 11 6 chr4 48728372 48728547 -135560115 + L1MA4A LINE L1 6120 6295 -8 263 224 0 52 chr4 48729236 48729294 -135559368 - Tigger5 DNA MER2_type -2268 55 1 542 274 61 37 chr4 48729344 48729508 -135559154 - MIR SINE MIR -58 204 37 23 0 0 0 chr4 48729860 48729883 -135558779 + AT_rich Low_complexity Low_complexity 1 23 0 235 158 18 88 chr4 48730149 48730206 -135558456 - MLT1J2 LTR MaLR -299 151 99 535 253 15 45 chr4 48730307 48730505 -135558157 + AluSq SINE Alu 107 298 -15 1802 161 94 11 chr4 48730520 48730892 -135557770 + L1MA8 LINE L1 5884 6286 -5 243 314 124 22 chr4 48731153 48731290 -135557372 - L2 LINE L2 0 3272 3122 705 222 20 66 chr4 48731376 48731507 -135557155 + MER5A DNA MER1_type 1 122 -67 2273 80 0 26 chr4 48731507 48731809 -135556853 - AluSq SINE Alu -19 294 1 705 222 20 66 chr4 48731809 48731875 -135556787 + MER5A DNA MER1_type 122 189 0 772 211 101 101 chr4 48733853 48734270 -135554392 + L1ME3A LINE L1 5384 5800 -362 459 250 118 7 chr4 48735070 48735222 -135553440 - MIR SINE MIR -4 258 90 2230 123 0 3 chr4 48735293 48735602 -135553060 + AluSg SINE Alu 1 308 -2 1234 224 86 17 chr4 48735604 48735965 -135552697 + L1MA8 LINE L1 5884 6269 -22 390 225 0 0 chr4 48736371 48736460 -135552202 + L1ME3A LINE L1 6038 6126 -44 1759 170 10 10 chr4 48736465 48736765 -135551897 - AluJo SINE Alu -12 300 1 2149 115 0 0 chr4 48738090 48738385 -135550277 + AluSc SINE Alu 1 295 -14 1173 211 103 22 chr4 48738674 48739082 -135549580 + L1MC5 LINE L1 7300 7740 -221 436 272 175 10 chr4 48739108 48739314 -135549348 - L1M4 LINE L1 -2081 4065 3826 1302 173 104 12 chr4 48739800 48740214 -135548448 + Charlie1b DNA MER1_type 7 521 -2 282 333 124 46 chr4 48740398 48740551 -135548111 + MIR SINE MIR 47 211 -51 25 0 0 0 chr4 48741063 48741088 -135547574 + AT_rich Low_complexity Low_complexity 1 25 0 1636 203 7 0 chr4 48741130 48741440 -135547222 - AluJb SINE Alu 0 312 1 1297 101 0 6 chr4 48741809 48741978 -135546684 + AluSg/x SINE Alu 128 295 -17 4736 259 59 25 chr4 48742098 48743935 -135544727 + L1MEc LINE L1 37 1936 -4460 258 176 0 0 chr4 48744260 48744311 -135544351 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 2299 141 34 36 chr4 48744604 48745022 -135543640 + L1MC1 LINE L1 5819 6235 -98 1700 157 0 14 chr4 48745220 48745500 -135543162 - AluJo SINE Alu -24 288 13 10221 132 32 5 chr4 48746178 48747825 -135540837 + Tigger1 DNA MER2_type 1 1691 -727 2480 70 0 13 chr4 48749190 48749505 -135539157 - AluY SINE Alu 0 311 1 283 302 56 49 chr4 48749568 48749873 -135538789 - HAL1b LINE L1 -703 645 339 2659 213 37 4 chr4 48750373 48750917 -135537745 - MER68 LTR ERV1 0 562 1 198 0 0 0 chr4 48751379 48751401 -135537261 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 1745 131 3 76 chr4 48751502 48751830 -135536832 - AluJb SINE Alu -8 304 1 2291 156 31 50 chr4 48752350 48752773 -135535889 - MER21A LTR ERV1 -19 912 498 8424 190 138 9 chr4 48753019 48754809 -135533853 + L1 LINE L1 7 2028 -5537 4978 174 6 1 chr4 48754807 48755750 -135532912 + L1 LINE L1 5838 6785 -780 * 271 315 194 29 chr4 48755850 48756129 -135532533 + L2 LINE L2 2447 2771 -543 187 333 100 8 chr4 48757052 48757172 -135531490 + L2 LINE L2 3141 3271 -1 207 305 91 46 chr4 48758540 48758737 -135529925 + L2 LINE L2 2338 2543 -771 187 303 61 50 chr4 48759329 48759428 -135529234 - L2 LINE L2 -69 3203 3104 1790 114 22 11 chr4 48759865 48760138 -135528524 - AluSg SINE Alu -4 306 31 612 272 88 21 chr4 48762941 48763180 -135525482 - MIR SINE MIR -1 261 7 277 278 52 31 chr4 48763224 48763321 -135525341 + MIR3 SINE MIR 89 187 -21 266 225 25 25 chr4 48764286 48764366 -135524296 - L2 LINE L2 -73 3240 3161 189 0 0 0 chr4 48764928 48764949 -135523713 + (CACCT)n Simple_repeat Simple_repeat 3 23 0 292 286 105 9 chr4 48765123 48765228 -135523434 + MIR SINE MIR 122 236 -26 461 261 35 0 chr4 48765262 48765377 -135523285 - MIR SINE MIR -110 152 34 189 161 0 0 chr4 48765468 48765499 -135523163 - L2 LINE L2 -1 3271 3241 284 245 32 11 chr4 48765511 48765605 -135523057 + MLT1C LTR MaLR 17 112 -355 * 546 184 18 9 chr4 48765604 48765713 -135522949 + MLT1C LTR MaLR 357 466 -1 522 243 61 80 chr4 48765714 48765977 -135522685 - L2 LINE L2 -27 3286 3029 508 310 149 30 chr4 48767469 48768052 -135520610 + L2 LINE L2 2651 3313 0 2067 111 0 84 chr4 48768495 48768827 -135519835 + AluSx SINE Alu 1 304 -8 10260 29 1 0 chr4 48768883 48770894 -135517768 + L1PA4 LINE L1 4141 6167 0 2287 75 0 0 chr4 48772416 48772724 -135515938 + AluY SINE Alu 1 308 0 1102 209 118 29 chr4 48773539 48773854 -135514808 + MER2 DNA MER2_type 1 343 -1 887 174 14 68 chr4 48776149 48776368 -135512294 + MER3 DNA MER1_type 3 209 0 182 398 23 0 chr4 48777010 48777098 -135511564 - L2 LINE L2 -6 3266 3177 206 231 0 0 chr4 48777422 48777461 -135511201 + (CA)n Simple_repeat Simple_repeat 1 39 0 24 32 0 0 chr4 48778254 48778285 -135510377 + AT_rich Low_complexity Low_complexity 1 31 0 2000 163 0 0 chr4 48778382 48778682 -135509980 + AluSx SINE Alu 1 300 -12 1684 163 67 30 chr4 48779263 48779722 -135508940 + MER39 LTR ERV1 1 523 -184 2212 54 7 11 chr4 48780013 48780289 -135508373 + AluY SINE Alu 37 311 0 461 180 0 0 chr4 48780440 48780529 -135508133 + L1MC4 LINE L1 7182 7270 -772 2460 91 0 0 chr4 48781090 48781397 -135507265 + AluSg SINE Alu 1 307 -3 14464 106 67 5 chr4 48781417 48783692 -135504970 - Tigger1 DNA MER2_type -2 2416 1 1170 303 162 20 chr4 48785067 48785868 -135502794 - L2 LINE L2 -6 3307 2392 364 288 117 37 chr4 48785987 48786150 -135502512 + MIR3 SINE MIR 14 189 -19 23 68 0 0 chr4 48786691 48786735 -135501927 + AT_rich Low_complexity Low_complexity 1 44 0 26 0 0 0 chr4 48786997 48787023 -135501639 + AT_rich Low_complexity Low_complexity 1 26 0 3060 230 68 25 chr4 48788128 48789022 -135499640 + L1MC2 LINE L1 4272 5217 -929 1541 149 6 98 chr4 48789022 48789357 -135499305 + AluJb SINE Alu 1 304 -8 3060 230 68 25 chr4 48789357 48789477 -135499185 + L1MC2 LINE L1 5217 5330 -816 1064 206 9 9 chr4 48789484 48789712 -135498950 + Tigger1 DNA MER2_type 73 300 -2118 198 0 0 0 chr4 48789717 48789739 -135498923 + (A)n Simple_repeat Simple_repeat 1 22 0 886 129 94 0 chr4 48789774 48789944 -135498718 + L1MA5A LINE L1 5897 6082 -215 1134 193 9 9 chr4 48790160 48790388 -135498274 + Tigger1 DNA MER2_type 73 300 -2118 198 0 0 0 chr4 48790392 48790414 -135498248 + (A)n Simple_repeat Simple_repeat 1 22 0 698 194 94 0 chr4 48790450 48790620 -135498042 + L1MA5A LINE L1 5897 6082 -215 1067 120 51 51 chr4 48790712 48790929 -135497733 + L1MA5A LINE L1 6076 6292 -5 4539 157 24 16 chr4 48790929 48791794 -135496868 + L1MC2 LINE L1 5460 6331 -13 252 232 205 18 chr4 48791811 48791923 -135496739 + MLT1L LTR MaLR 171 303 -312 386 260 100 47 chr4 48792015 48792165 -135496497 + MLT1L LTR MaLR 389 546 -69 1606 267 37 12 chr4 48792173 48792735 -135495927 - L1M4 LINE L1 -1653 4493 3918 623 136 39 0 chr4 48792744 48792847 -135495815 + AluSg/x SINE Alu 197 303 -7 190 270 0 0 chr4 48793578 48793615 -135495047 - L2 LINE L2 -97 3175 3139 318 265 15 0 chr4 48794350 48794418 -135494244 + L2 LINE L2 3229 3297 -16 2137 109 7 0 chr4 48794428 48794776 -135493886 + AluSx SINE Alu 1 350 0 194 358 119 0 chr4 48794902 48795011 -135493651 + L2 LINE L2 3142 3263 -9 1583 101 37 0 chr4 48795557 48795775 -135492887 - AluY SINE Alu -85 226 1 298 358 0 96 chr4 48795814 48795931 -135492731 + L2 LINE L2 2934 3014 -258 2092 109 14 0 chr4 48795931 48796224 -135492438 + AluSq SINE Alu 1 297 -16 298 358 0 96 chr4 48796224 48796366 -135492296 + L2 LINE L2 3014 3168 -104 1288 220 87 23 chr4 48797018 48797210 -135491452 + L1ME LINE L1 4942 5120 -1044 1938 116 21 7 chr4 48797210 48797494 -135491168 - AluSx SINE Alu -24 288 1 1288 220 87 23 chr4 48797494 48797976 -135490686 + L1ME LINE L1 5120 5653 -511 701 238 14 9 chr4 48797972 48798186 -135490476 + L1ME2 LINE L1 4985 5199 -947 * 1776 194 84 17 chr4 48798177 48798651 -135490011 + L1ME2 LINE L1 5656 6161 -3 697 135 9 0 chr4 48798686 48798797 -135489865 + MSTC LTR MaLR 317 428 0 1567 173 56 3 chr4 48799049 48799333 -135489329 + AluSx SINE Alu 1 299 -13 595 159 28 0 chr4 48799335 48799442 -135489220 + MER3 DNA MER1_type 53 162 -47 822 157 130 58 chr4 48799452 48799652 -135489010 + MER3 DNA MER1_type 2247 2472 -152 2398 78 0 3 chr4 48799652 48799948 -135488714 + AluSc SINE Alu 1 295 -14 822 157 130 58 chr4 48799948 48800008 -135488654 + MER3 DNA MER1_type 2472 2526 -98 185 262 71 0 chr4 48800058 48800100 -135488562 - L2 LINE L2 -4 3268 3224 * 458 299 107 47 chr4 48800070 48800304 -135488358 - MIR SINE MIR -13 249 2 22 0 0 0 chr4 48800353 48800375 -135488287 + AT_rich Low_complexity Low_complexity 1 22 0 1783 181 24 0 chr4 48800551 48800839 -135487823 - AluJo SINE Alu -17 295 1 617 330 31 18 chr4 48800917 48801141 -135487521 - L3 LINE CR1 -3 1574 1348 390 214 124 0 chr4 48801126 48801215 -135487447 + MIR SINE MIR 151 250 -12 * 26 30 0 0 chr4 48801630 48801663 -135486999 + AT_rich Low_complexity Low_complexity 1 33 0 27 0 0 0 chr4 48802090 48802117 -135486545 + AT_rich Low_complexity Low_complexity 1 27 0 251 298 15 61 chr4 48802139 48802270 -135486392 - L1P LINE L1 -1140 5006 4882 376 297 104 54 chr4 48802762 48803015 -135485647 - L1M4 LINE L1 -2082 4064 3786 2271 113 0 0 chr4 48803015 48803315 -135485347 - AluSx SINE Alu -12 300 1 376 297 104 54 chr4 48803315 48803415 -135485247 - L1M4 LINE L1 -2360 3786 3693 480 274 111 13 chr4 48803773 48803926 -135484736 + MIR SINE MIR 1 168 -94 463 315 62 11 chr4 48803996 48804174 -135484488 - MER5A DNA MER1_type -1 188 2 1541 202 28 92 chr4 48804390 48804609 -135484053 + L1M4 LINE L1 3835 4067 -2079 2253 122 0 0 chr4 48804609 48804920 -135483742 + AluSx SINE Alu 1 311 -1 1541 202 28 92 chr4 48804920 48805275 -135483387 + L1M4 LINE L1 4067 4372 -1774 2289 100 0 0 chr4 48805286 48805577 -135483085 + AluY SINE Alu 2 292 -19 519 272 140 16 chr4 48806034 48806284 -135482378 - LTR33A LTR ERVL 0 523 243 191 449 0 0 chr4 48806583 48806690 -135481972 - L2 LINE L2 -546 2768 2662 2301 109 0 0 chr4 48807046 48807358 -135481304 - AluSx SINE Alu 0 312 1 227 366 28 7 chr4 48807442 48807584 -135481078 - L2 LINE L2 -15 3298 3154 508 216 88 39 chr4 48807600 48807781 -135480881 - LTR33 LTR ERVL -4 517 328 2108 111 7 3 chr4 48807971 48808260 -135480402 + AluSp SINE Alu 15 304 -9 734 104 4 2 chr4 48808462 48808703 -135479959 + AluSx SINE Alu 1 291 -19 272 26 0 26 chr4 48808757 48808795 -135479867 + (TG)n Simple_repeat Simple_repeat 2 38 0 2117 104 0 7 chr4 48809198 48809476 -135479186 + AluSx SINE Alu 1 276 -36 234 0 0 0 chr4 48809482 48809508 -135479154 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 472 325 52 52 chr4 48809694 48810287 -135478375 - L1MC4a LINE L1 -1901 5907 5315 230 214 0 54 chr4 48810302 48810358 -135478304 - L2 LINE L2 0 3313 3261 2159 97 7 32 chr4 48810655 48810964 -135477698 - AluSx SINE Alu -11 301 1 25 51 0 0 chr4 48811393 48811432 -135477230 + AT_rich Low_complexity Low_complexity 1 39 0 1038 121 0 0 chr4 48811499 48811640 -135477022 + AluJb SINE Alu 1 141 -171 584 14 14 0 chr4 48811657 48811730 -135476932 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 22 0 0 0 chr4 48811734 48811756 -135476906 + AT_rich Low_complexity Low_complexity 1 22 0 327 225 119 44 chr4 48811804 48811964 -135476698 + L1ME4a LINE L1 5943 6114 -7 290 78 74 65 chr4 48812026 48812103 -135476559 + L1MA9 LINE L1 6001 6078 -233 362 141 55 10 chr4 48812131 48812216 -135476446 + L1MA9 LINE L1 6001 6084 -207 262 274 75 47 chr4 48812422 48812528 -135476134 + MIR SINE MIR 46 154 -108 248 270 40 40 chr4 48813172 48813246 -135475416 + L2 LINE L2 3189 3262 -51 331 322 116 0 chr4 48814728 48814849 -135473813 + MIR SINE MIR 20 154 -108 4654 180 23 51 chr4 48814940 48816649 -135472013 - L1MA10 LINE L1 0 6334 4672 602 278 37 0 chr4 48816758 48816945 -135471717 - MER3 DNA MER1_type -10 199 6 1890 135 36 10 chr4 48817007 48817311 -135471351 + AluSx SINE Alu 1 312 0 774 164 119 10 chr4 48817823 48818024 -135470638 - MLT1C LTR MaLR -244 223 1 297 260 171 32 chr4 48819128 48819251 -135469411 - L2 LINE L2 0 3313 3174 274 336 35 0 chr4 48819797 48819910 -135468752 + MIR3 SINE MIR 85 201 -7 1317 178 123 21 chr4 48820058 48820392 -135468270 - MER21B LTR ERV1 -4 601 406 1044 219 60 17 chr4 48820384 48820558 -135468104 - MER33 DNA MER1_type -2270 315 121 * 2711 39 0 0 chr4 48820558 48820867 -135467795 - AluY SINE Alu -2 309 1 1044 219 60 17 chr4 48820867 48820994 -135467668 - MER33 DNA MER1_type -2464 121 1 802 193 41 51 chr4 48821006 48821203 -135467459 + MLT1D LTR MaLR 1 195 -310 1060 229 52 82 chr4 48821228 48821594 -135467068 - MER21B LTR ERV1 -497 366 12 23 33 0 0 chr4 48822024 48822054 -135466608 + AT_rich Low_complexity Low_complexity 1 30 0 388 293 70 25 chr4 48822230 48822387 -135466275 + MIR SINE MIR 49 212 -50 1311 207 40 0 chr4 48822628 48822932 -135465730 - MER33 DNA MER1_type -8 316 1 2176 206 43 6 chr4 48822955 48823425 -135465237 + MLT1D LTR MaLR 12 498 -7 2030 141 3 10 chr4 48823741 48824046 -135464616 + AluSx SINE Alu 1 303 -9 739 248 19 12 chr4 48824225 48824386 -135464276 - MER5A DNA MER1_type 0 189 28 894 158 0 0 chr4 48825126 48825265 -135463397 + FLAM_C SINE Alu 5 143 0 2095 214 43 41 chr4 48825999 48826630 -135462032 + L1MC4 LINE L1 6459 7090 -952 2391 74 3 0 chr4 48826631 48826927 -135461735 + AluSc SINE Alu 1 297 -12 1239 249 206 11 chr4 48826929 48827483 -135461179 + L1MC4 LINE L1 7239 7900 -142 25 65 0 0 chr4 48828242 48828288 -135460374 + AT_rich Low_complexity Low_complexity 1 46 0 31 68 0 0 chr4 48828335 48828394 -135460268 + AT_rich Low_complexity Low_complexity 1 59 0 2194 122 0 0 chr4 48828490 48828785 -135459877 - AluSg SINE Alu -15 295 1 230 363 50 0 chr4 48828926 48829006 -135459656 + L2 LINE L2 3141 3224 -48 359 280 122 99 chr4 48829084 48829599 -135459063 - L1MEd LINE L1 -5494 625 99 1870 172 7 7 chr4 48830843 48831151 -135457511 - AluJb SINE Alu -4 308 1 182 326 61 45 chr4 48833751 48833883 -135454779 - MIR3 SINE MIR -62 146 13 1625 231 14 3 chr4 48835624 48835983 -135452679 + MER119 DNA MER1_type 5 367 -216 229 310 11 46 chr4 48836116 48836203 -135452459 - L2 LINE L2 0 3313 3230 180 0 0 0 chr4 48836421 48836441 -135452221 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1578 193 0 25 chr4 48836446 48836731 -135451931 - AluJo SINE Alu -34 278 1 940 250 18 0 chr4 48836997 48837217 -135451445 - MER58A DNA MER1_type 0 224 1 309 106 0 0 chr4 48837282 48837329 -135451333 + AluJb SINE Alu 1 47 -255 329 206 0 0 chr4 48837366 48837434 -135451228 + 7SK RNA RNA 126 193 0 301 240 20 40 chr4 48837763 48837863 -135450799 - L2 LINE L2 -620 2694 2597 * 351 296 93 0 chr4 48837861 48837969 -135450693 + L2 LINE L2 3173 3290 -23 * 485 285 258 38 chr4 48837963 48838332 -135450330 - L2 LINE L2 -890 2424 1975 1611 154 26 22 chr4 48838499 48838830 -135449832 + AluJb SINE Alu 38 369 0 607 95 0 0 chr4 48839241 48839325 -135449337 + AluSg SINE Alu 1 84 -226 332 204 85 6 chr4 48839448 48839610 -135449052 - LTR24B LTR ERV1 -416 160 1 1007 244 58 13 chr4 48840064 48840289 -135448373 - MIR SINE MIR -10 252 18 2215 124 3 0 chr4 48840353 48840660 -135448002 + AluSq SINE Alu 1 308 -5 433 230 44 0 chr4 48841030 48841143 -135447519 - MIR SINE MIR 0 262 145 34118 95 13 10 chr4 48841150 48847214 -135441448 - L1PA6 LINE L1 -4 6465 387 528 99 0 0 chr4 48847560 48847631 -135441031 - L1PA6 LINE L1 -6374 87 17 236 258 48 16 chr4 48847667 48847729 -135440933 - MIR SINE MIR -190 72 9 4907 155 15 34 chr4 48848027 48848907 -135439755 + L1PB3 LINE L1 4450 5302 -852 1915 153 0 13 chr4 48848907 48849208 -135439454 + AluSx SINE Alu 1 297 -15 4907 155 15 34 chr4 48849208 48850045 -135438617 + L1PB3 LINE L1 5302 6153 -1 29 0 0 0 chr4 48850161 48850190 -135438472 + AT_rich Low_complexity Low_complexity 1 29 0 1177 211 45 27 chr4 48850192 48850529 -135438133 + L1ME LINE L1 5454 5796 -366 611 157 0 0 chr4 48850541 48850643 -135438019 - MER8 DNA MER2_type -137 102 1 326 259 88 20 chr4 48850764 48850911 -135437751 + LTR41 LTR ERVL 1 157 -616 1139 325 124 4 chr4 48852519 48853099 -135435563 - L2 LINE L2 0 3313 2652 23 33 0 0 chr4 48853211 48853241 -135435421 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chr4 48853773 48853795 -135434867 + (A)n Simple_repeat Simple_repeat 1 22 0 654 167 96 45 chr4 48854360 48854558 -135434104 + MER3 DNA MER1_type 1 208 -1 2122 129 3 3 chr4 48854842 48855144 -135433518 - AluSx SINE Alu -10 302 1 25 65 0 0 chr4 48855817 48855863 -135432799 + AT_rich Low_complexity Low_complexity 1 46 0 238 370 43 22 chr4 48856304 48856442 -135432220 + MIR3 SINE MIR 5 145 -63 2092 128 3 13 chr4 48856534 48856847 -135431815 + AluSq SINE Alu 1 310 -3 229 167 0 21 chr4 48856893 48856941 -135431721 - MER69 DNA AcHobo -2478 48 2 1681 142 32 14 chr4 48857510 48857792 -135430870 + AluSq SINE Alu 1 287 -26 26 50 0 0 chr4 48858216 48858256 -135430406 + AT_rich Low_complexity Low_complexity 1 40 0 472 321 42 30 chr4 48858740 48858977 -135429685 - LTR16C LTR ERVL -95 396 157 335 194 291 52 chr4 48860576 48860710 -135427952 - MIR SINE MIR -9 253 88 25 0 0 0 chr4 48861162 48861187 -135427475 + AT_rich Low_complexity Low_complexity 1 25 0 301 291 21 50 chr4 48861477 48861618 -135427044 - L2 LINE L2 -582 2732 2596 * 386 209 93 54 chr4 48861615 48861744 -135426918 + MIR SINE MIR 86 219 -43 1582 193 35 14 chr4 48862783 48863073 -135425589 + AluJo SINE Alu 1 296 -16 2516 65 0 0 chr4 48863311 48863618 -135425044 + AluY SINE Alu 1 307 -4 679 296 45 28 chr4 48863694 48863941 -135424721 - MIR SINE MIR -10 252 2 326 271 33 36 chr4 48864031 48864142 -135424520 + MIR SINE MIR 29 139 -69 2369 93 0 13 chr4 48864285 48864598 -135424064 - AluSx SINE Alu -3 309 1 22 56 0 0 chr4 48864649 48864685 -135423977 + AT_rich Low_complexity Low_complexity 1 36 0 850 180 6 37 chr4 48864835 48864996 -135423666 + FRAM SINE Alu 1 156 -10 25 0 0 0 chr4 48865466 48865491 -135423171 + AT_rich Low_complexity Low_complexity 1 25 0 28 0 0 0 chr4 48865507 48865535 -135423127 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr4 48865554 48865579 -135423083 + AT_rich Low_complexity Low_complexity 1 25 0 2292 86 3 0 chr4 48865583 48865873 -135422789 + AluSx SINE Alu 1 291 -21 2455 69 3 0 chr4 48865873 48866176 -135422486 + AluY SINE Alu 1 304 -7 702 176 20 20 chr4 48868162 48868310 -135420352 - LTR24 LTR ERV1 -55 412 265 281 248 64 89 chr4 48868449 48868606 -135420056 - MIR SINE MIR -66 196 44 433 209 9 0 chr4 48868634 48868744 -135419918 + MER53 DNA DNA 79 189 0 2134 133 0 9 chr4 48869019 48869334 -135419328 + AluSx SINE Alu 1 312 0 279 0 0 0 chr4 48869334 48869349 -135419313 + (CA)n Simple_repeat Simple_repeat 1 46 0 279 0 0 0 chr4 48869349 48869380 -135419282 + (CA)n Simple_repeat Simple_repeat 2 32 0 581 324 55 17 chr4 48869656 48869894 -135418768 + MIR SINE MIR 1 247 -15 461 263 53 9 chr4 48870514 48870628 -135418034 + MIR SINE MIR 76 194 -68 1945 128 39 0 chr4 48870823 48871105 -135417557 + AluSx SINE Alu 2 294 -18 244 226 234 8 chr4 48871315 48871439 -135417223 - L2 LINE L2 -3 3310 3159 336 24 0 0 chr4 48871667 48871708 -135416954 + (TTGTG)n Simple_repeat Simple_repeat 4 44 0 282 350 25 104 chr4 48872095 48872258 -135416404 + L2 LINE L2 3117 3266 -6 * 1145 280 95 26 chr4 48872224 48872678 -135415984 - L2 LINE L2 -2 3311 2827 994 274 7 24 chr4 48872689 48872985 -135415677 - L2 LINE L2 -674 2640 2350 24 85 0 0 chr4 48873324 48873383 -135415279 + AT_rich Low_complexity Low_complexity 1 59 0 482 129 0 0 chr4 48873557 48873627 -135415035 + MER8 DNA MER2_type 169 238 -1 237 337 0 33 chr4 48873753 48873845 -135414817 + MIR SINE MIR 15 103 -159 22 35 0 0 chr4 48874207 48874236 -135414426 + AT_rich Low_complexity Low_complexity 1 29 0 1149 117 5 10 chr4 48874341 48874537 -135414125 - L1PB1 LINE L1 0 6867 6673 3491 127 71 30 chr4 48874537 48875525 -135413137 + MER11A LTR ERVK 4 1264 -2 14174 188 35 4 chr4 48875529 48877345 -135411317 - L1PB1 LINE L1 -188 6679 4920 248 0 31 0 chr4 48877345 48877377 -135411285 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 14174 188 35 4 chr4 48877377 48880711 -135407951 - L1PB1 LINE L1 -1947 4920 1392 707 246 5 5 chr4 48880709 48880900 -135407762 - L1PB1 LINE L1 -6667 196 6 * 310 305 59 66 chr4 48881019 48881275 -135407387 + MIR SINE MIR 9 262 0 1448 136 14 14 chr4 48881457 48881678 -135406984 + AluSx SINE Alu 1 221 -91 1637 288 170 6 chr4 48881803 48882502 -135406160 - L2 LINE L2 -999 2315 1502 216 0 0 0 chr4 48883237 48883261 -135405401 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 226 213 88 75 chr4 48884103 48884183 -135404479 + MIR SINE MIR 34 114 -148 2152 117 0 10 chr4 48884553 48884851 -135403811 + AluSx SINE Alu 1 295 -17 806 161 12 48 chr4 48884853 48885021 -135403641 + AluSc SINE Alu 133 294 -15 237 188 14 14 chr4 48885022 48885091 -135403571 + AluS SINE Alu 3 71 -228 279 286 32 24 chr4 48885257 48885383 -135403279 - LTR40b LTR ERVL -149 313 187 1230 205 11 8 chr4 48885383 48885646 -135403016 - L1PA16 LINE L1 -102 6064 5801 258 308 11 22 chr4 48886035 48886126 -135402536 + GA-rich Low_complexity Low_complexity 3 92 0 228 264 7 68 chr4 48887270 48887418 -135401244 + GA-rich Low_complexity Low_complexity 1 139 0 203 313 10 20 chr4 48887453 48887552 -135401110 + GA-rich Low_complexity Low_complexity 3 100 0 33 56 0 0 chr4 48889177 48889231 -135399431 + AT_rich Low_complexity Low_complexity 1 54 0 1789 120 45 3 chr4 48889290 48889599 -135399063 + L1MA5 LINE L1 5979 6300 0 1710 134 119 0 chr4 48890202 48890479 -135398183 + AluSx SINE Alu 1 310 -2 626 309 103 37 chr4 48890481 48890860 -135397802 + L1M4 LINE L1 4075 4478 -1668 234 263 179 42 chr4 48891027 48891267 -135397395 + L1M4 LINE L1 4562 4834 -1312 1949 25 51 0 chr4 48891425 48891662 -135397000 + AluY SINE Alu 1 249 -62 16373 22 0 0 chr4 48891762 48894525 -135394137 + L1HS LINE L1 3380 6142 -13 347 313 195 29 chr4 48894625 48894938 -135393724 + L2 LINE L2 2949 3313 0 336 318 95 43 chr4 48895069 48895437 -135393225 + L1ME LINE L1 4640 5026 -1120 2408 81 3 0 chr4 48895437 48895734 -135392928 - AluSx SINE Alu -14 298 1 23 0 0 0 chr4 48895783 48895806 -135392856 + AT_rich Low_complexity Low_complexity 1 23 0 410 312 53 15 chr4 48895846 48896090 -135392572 + L1ME LINE L1 5178 5430 -740 5074 153 22 11 chr4 48896837 48898285 -135390377 + L1PB4 LINE L1 4682 6141 -15 29 28 0 0 chr4 48898946 48898982 -135389680 + AT_rich Low_complexity Low_complexity 1 36 0 2211 108 13 0 chr4 48899675 48899981 -135388681 - AluSx SINE Alu -2 310 1 22 0 0 0 chr4 48900306 48900328 -135388334 + AT_rich Low_complexity Low_complexity 1 22 0 2181 117 0 0 chr4 48900369 48900659 -135388003 - AluSq SINE Alu -23 290 1 201 279 164 0 chr4 48901848 48901909 -135386753 + MIR SINE MIR 81 151 -111 302 189 0 0 chr4 48902463 48902516 -135386146 + MIR SINE MIR 166 218 -44 213 39 0 0 chr4 48902537 48902563 -135386099 + (TAG)n Simple_repeat Simple_repeat 1 26 0 1472 118 41 0 chr4 48902811 48903032 -135385630 - MER30 DNA MER1_type 0 230 1 184 203 23 156 chr4 48903898 48904026 -135384636 + MIR SINE MIR 112 222 -40 1915 167 0 0 chr4 48905247 48905547 -135383115 + AluJb SINE Alu 1 300 -12 780 171 4 6 chr4 48906973 48907216 -135381446 + AluJo SINE Alu 9 288 -24 23 33 0 0 chr4 48907251 48907281 -135381381 + AT_rich Low_complexity Low_complexity 1 30 0 2093 117 10 0 chr4 48907666 48907957 -135380705 + AluSg SINE Alu 1 294 -16 183 295 66 0 chr4 48908298 48908359 -135380303 + MIR SINE MIR 184 248 -14 2084 96 14 4 chr4 48908866 48909146 -135379516 + AluSx SINE Alu 1 283 -29 1463 201 32 11 chr4 48909567 48909850 -135378812 + AluJo SINE Alu 1 289 -23 1988 108 0 72 chr4 48909862 48910194 -135378468 + AluSp SINE Alu 1 308 -5 189 0 0 0 chr4 48910194 48910215 -135378447 + (GA)n Simple_repeat Simple_repeat 2 22 0 4368 116 17 65 chr4 48910374 48911098 -135377564 - LTR8 LTR ERV1 -2 689 1 2231 106 0 0 chr4 48912603 48912895 -135375767 + AluSx SINE Alu 6 297 -15 634 205 8 8 chr4 48912936 48913053 -135375609 + MER5B DNA MER1_type 60 176 -2 1000 188 12 0 chr4 48913225 48913395 -135375267 + AluJb SINE Alu 136 307 -5 284 299 0 13 chr4 48913395 48913472 -135375190 + Charlie4 DNA MER1_type 1885 1960 -1 848 181 34 0 chr4 48913963 48914112 -135374550 + MER20 DNA MER1_type 59 212 -7 455 298 50 0 chr4 48914279 48914440 -135374222 - MLT1K LTR MaLR -285 303 135 1226 158 26 48 chr4 48914599 48914922 -135373740 - AluSx SINE Alu 0 363 47 304 292 22 0 chr4 48915063 48915152 -135373510 - MLT1K LTR MaLR -363 225 135 1995 137 23 7 chr4 48915311 48915667 -135372995 - AluSx SINE Alu 0 361 1 1099 285 43 61 chr4 48916050 48916541 -135372121 + L2 LINE L2 2826 3307 -6 2176 105 0 0 chr4 48916918 48917203 -135371459 + AluSx SINE Alu 1 285 -27 234 0 0 0 chr4 48917213 48917239 -135371423 + (GAA)n Simple_repeat Simple_repeat 2 27 0 504 184 87 135 chr4 48918390 48918575 -135370087 - MER5B DNA MER1_type -2 176 1 659 224 93 6 chr4 48918583 48918744 -135369918 + MER5B DNA MER1_type 1 175 -3 482 244 154 39 chr4 48918758 48918914 -135369748 - MER5A DNA MER1_type 0 189 16 388 192 13 0 chr4 48919357 48919435 -135369227 - MER53 DNA DNA 0 189 111 1246 224 135 6 chr4 48919472 48919820 -135368842 - LTR52 LTR ERVL -27 394 2 514 145 46 76 chr4 48919820 48919943 -135368719 - MER53 DNA DNA -70 119 1 394 282 149 11 chr4 48920263 48920444 -135368218 + MIR SINE MIR 54 259 -3 844 163 6 51 chr4 48920477 48920655 -135368007 + MLT1A2 LTR MaLR 1 170 -204 270 197 0 16 chr4 48921022 48921083 -135367579 - L2 LINE L2 0 3313 3254 1892 162 0 0 chr4 48921314 48921617 -135367045 - AluJb SINE Alu -9 303 1 996 187 12 0 chr4 48922125 48922291 -135366371 + FRAM SINE Alu 1 160 -16 1841 130 0 0 chr4 48922529 48922798 -135365864 + AluY SINE Alu 1 269 -42 7681 64 7 1 chr4 48923544 48924688 -135363974 + L1P2 LINE L1 4429 5575 -579 421 238 88 39 chr4 48924993 48925174 -135363488 + LTR33 LTR ERVL 328 517 -4 190 366 28 7 chr4 48925190 48925332 -135363330 + L2 LINE L2 3154 3298 -15 1053 164 0 11 chr4 48925416 48925599 -135363063 + AluSx SINE Alu 1 181 -131 1633 168 0 14 chr4 48926158 48926438 -135362224 + AluJo SINE Alu 13 288 -24 2354 141 33 36 chr4 48926636 48927056 -135361606 - L1MC1 LINE L1 -98 6235 5817 487 250 0 19 chr4 48928724 48928828 -135359834 - AluJ/FLAM SINE Alu -210 102 1 1272 107 0 6 chr4 48929197 48929366 -135359296 + AluSg/x SINE Alu 128 295 -17 1154 291 55 23 chr4 48929486 48930016 -135358646 + L1MEc LINE L1 37 583 -5813 5510 136 35 33 chr4 48930303 48931051 -135357611 + MER41-int LTR ERV1 4405 4472 -651 2056 111 4 4 chr4 48931051 48931362 -135357300 + AluSg SINE Alu 1 311 0 5510 136 35 33 chr4 48931362 48931528 -135357134 + MER41-int LTR ERV1 4472 4636 -487 2059 204 59 43 chr4 48931659 48932188 -135356474 - L1P3 LINE L1 -5538 923 387 611 69 0 0 chr4 48932582 48932654 -135356008 - L1P3 LINE L1 -6373 88 17 239 258 48 16 chr4 48932690 48932752 -135355910 - MIR SINE MIR -190 72 9 349 286 0 0 chr4 48933046 48933151 -135355511 + L1P LINE L1 4446 4550 -1596 212 298 0 0 chr4 48933210 48933304 -135355358 + C-rich Low_complexity Low_complexity 1 94 0 189 0 0 0 chr4 48933899 48933920 -135354742 + (T)n Simple_repeat Simple_repeat 1 21 0 528 150 0 0 chr4 48933920 48934000 -135354662 + Charlie1 DNA MER1_type 2442 2521 -240 1482 121 0 22 chr4 48934113 48934337 -135354325 + MER1B DNA MER1_type 3 221 -76 25 0 0 0 chr4 48934337 48934362 -135354300 + AT_rich Low_complexity Low_complexity 1 25 0 4747 162 32 9 chr4 48934865 48935709 -135352953 + Tigger1 DNA MER2_type 829 1691 -727 7343 40 0 7 chr4 48936148 48937472 -135351190 - L1HS LINE L1 -82 6073 4762 2101 122 25 0 chr4 48939618 48939930 -135348732 - LTR28 LTR ERV1 -712 802 8 292 219 16 16 chr4 48940002 48940066 -135348596 + MIR3 SINE MIR 117 180 -28 25 51 0 0 chr4 48940334 48940373 -135348289 + AT_rich Low_complexity Low_complexity 1 39 0 28 0 0 0 chr4 48940526 48940554 -135348108 + AT_rich Low_complexity Low_complexity 1 28 0 270 188 0 29 chr4 48941655 48941724 -135346938 + GA-rich Low_complexity Low_complexity 3 69 0 272 188 62 50 chr4 48942001 48942081 -135346581 + MER117 DNA MER1_type 64 144 -53 460 182 273 0 chr4 48942162 48942283 -135346379 - MER5A DNA MER1_type -3 186 33 25 0 0 0 chr4 48942433 48942458 -135346204 + AT_rich Low_complexity Low_complexity 1 25 0 180 158 0 0 chr4 48942490 48942528 -135346134 + (TA)n Simple_repeat Simple_repeat 2 39 0 934 169 19 0 chr4 48944759 48944919 -135343743 + AluJb SINE Alu 150 312 0 350 219 73 37 chr4 48945016 48945098 -135343564 + MER21B LTR ERV1 1 85 -778 2225 106 3 0 chr4 48945113 48945406 -135343256 - AluSg SINE Alu -16 294 1 336 256 24 0 chr4 48945428 48945510 -135343152 + MER21B LTR ERV1 20 103 -760 701 209 45 0 chr4 48945511 48945645 -135343017 + FLAM_C SINE Alu 2 141 -2 280 127 48 0 chr4 48946034 48946097 -135342565 + GA-rich Low_complexity Low_complexity 3 68 0 2371 239 93 26 chr4 48946100 48946785 -135341877 + MER21B LTR ERV1 85 815 -48 432 167 104 0 chr4 48948136 48948232 -135340430 + L1MA4A LINE L1 6015 6120 -183 521 145 16 48 chr4 48948233 48948357 -135340305 + L1MA4A LINE L1 6183 6302 -1 1316 130 0 0 chr4 48948619 48948811 -135339851 + L1PA14 LINE L1 5968 6159 -2 23 0 0 0 chr4 48949033 48949056 -135339606 + AT_rich Low_complexity Low_complexity 1 23 0 528 150 0 0 chr4 48949492 48949572 -135339090 + Charlie1 DNA MER1_type 2442 2521 -240 1482 121 0 22 chr4 48949685 48949909 -135338753 + MER1B DNA MER1_type 3 221 -76 25 0 0 0 chr4 48949909 48949934 -135338728 + AT_rich Low_complexity Low_complexity 1 25 0 250 164 0 30 chr4 48950297 48950364 -135338298 + T-rich Low_complexity Low_complexity 5 69 0 203 191 0 24 chr4 48950476 48950518 -135338144 + T-rich Low_complexity Low_complexity 2 42 0 26 0 0 0 chr4 48950840 48950866 -135337796 + AT_rich Low_complexity Low_complexity 1 26 0 197 378 42 21 chr4 48951244 48951387 -135337275 - L2 LINE L2 -211 3061 2916 2589 312 52 37 chr4 48951486 48952196 -135336466 + HERV16 LTR ERVL 941 1676 -3320 918 131 0 0 chr4 48952196 48952318 -135336344 + FLAM_C SINE Alu 5 126 -7 2589 312 52 37 chr4 48952318 48952791 -135335871 + HERV16 LTR ERVL 1676 2141 -2855 396 297 20 27 chr4 48952866 48953014 -135335648 + HERV16 LTR ERVL 2330 2476 -2520 265 241 0 0 chr4 48953028 48953082 -135335580 + HERV16 LTR ERVL 2133 2186 -3578 1049 298 61 41 chr4 48953219 48953709 -135334953 + HERV16 LTR ERVL 2262 2761 -2235 294 29 0 0 chr4 48953882 48953917 -135334745 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 1892 123 7 14 chr4 48953919 48954195 -135334467 - AluSx SINE Alu -35 277 4 604 256 64 95 chr4 48954742 48954963 -135333699 + HERV16 LTR ERVL 3372 3510 -1486 1911 139 19 13 chr4 48954963 48955273 -135333389 + AluSx SINE Alu 1 312 0 604 256 64 95 chr4 48955273 48955448 -135333214 + HERV16 LTR ERVL 3510 3689 -1307 1074 336 65 30 chr4 48955481 48956495 -135332167 + HERV16 LTR ERVL 4263 5327 -437 709 298 67 47 chr4 48956719 48957105 -135331557 + LTR16A LTR ERVL 57 450 0 2656 106 3 3 chr4 48957695 48958052 -135330610 + THE1B LTR MaLR 1 357 -7 200 194 0 0 chr4 48958217 48958253 -135330409 + A-rich Low_complexity Low_complexity 4 39 0 976 78 78 0 chr4 48958757 48958885 -135329777 - MER85 DNA T2_type 0 139 2 2061 125 0 17 chr4 48959651 48959938 -135328724 + AluSx SINE Alu 1 282 -30 397 0 0 0 chr4 48959938 48959982 -135328680 + (TAAA)n Simple_repeat Simple_repeat 1 68 0 2611 123 0 3 chr4 48960350 48960715 -135327947 - THE1B LTR MaLR 0 364 1 1478 205 152 86 chr4 48961393 48962129 -135326533 + LTR1 LTR ERV1 1 785 0 2374 103 0 0 chr4 48962742 48963054 -135325608 - AluSx SINE Alu 0 312 1 224 255 20 0 chr4 48963411 48963462 -135325200 + L2 LINE L2 3262 3313 0 241 167 0 30 chr4 48964258 48964324 -135324338 + GA-rich Low_complexity Low_complexity 1 64 0 2308 118 0 6 chr4 48964493 48964807 -135323855 - AluSx SINE Alu 0 312 1 762 113 0 0 chr4 48965029 48965144 -135323518 + (TA)n Simple_repeat Simple_repeat 2 116 0 351 269 64 28 chr4 48965722 48965863 -135322799 - L2 LINE L2 -212 3060 2915 1893 156 46 46 chr4 48965883 48966273 -135322389 + MLT1B LTR MaLR 1 390 0 2449 77 3 0 chr4 48966612 48966909 -135321753 - AluSp SINE Alu -15 298 1 358 303 65 33 chr4 48966987 48967577 -135321085 - L1M4 LINE L1 -1500 4646 4039 2060 145 0 0 chr4 48967822 48968125 -135320537 + AluJb SINE Alu 1 303 -9 278 197 0 16 chr4 48968356 48968417 -135320245 + L2 LINE L2 3254 3313 0 1997 152 7 3 chr4 48969248 48969557 -135319105 - AluJb SINE Alu -2 310 1 250 351 43 0 chr4 48969620 48969714 -135318948 + MIR SINE MIR 51 148 -114 21 0 0 0 chr4 48970285 48970306 -135318356 + AT_rich Low_complexity Low_complexity 1 21 0 250 283 22 14 chr4 48971424 48971562 -135317100 - L1ME LINE L1 -240 5881 5743 2136 120 3 0 chr4 48971595 48971887 -135316775 - AluSx SINE Alu -19 293 1 1962 138 10 10 chr4 48972163 48972459 -135316203 + AluSx SINE Alu 1 296 -16 269 308 82 7 chr4 48972512 48972658 -135316004 - HAL1 LINE L1 -2225 282 126 1670 206 125 7 chr4 48972660 48973222 -135315440 - Zaphod DNA AcHobo 0 4031 3404 459 214 10 0 chr4 48973234 48973337 -135315325 - Tigger5 DNA MER2_type -1 2322 2219 249 218 0 0 chr4 48973330 48973385 -135315277 - Tigger5 DNA MER2_type -2268 55 1 * 536 314 33 20 chr4 48973534 48973837 -135314825 + L1MEc LINE L1 253 559 -5837 2054 139 3 7 chr4 48973883 48974185 -135314477 + AluSx SINE Alu 6 306 -6 503 239 0 0 chr4 48974252 48974361 -135314301 + Tigger7 DNA MER2_type 5 113 -620 * 1914 135 72 22 chr4 48974358 48974720 -135313942 + Tigger7 DNA MER2_type 2205 2584 -3 1429 257 80 66 chr4 48974740 48974975 -135313687 + L1MEc LINE L1 664 894 -5502 1970 137 3 7 chr4 48974975 48975260 -135313402 + AluSx SINE Alu 3 286 -26 1429 257 80 66 chr4 48975260 48975759 -135312903 + L1MEc LINE L1 894 1419 -4977 2239 96 7 0 chr4 48975759 48976052 -135312610 - AluSp SINE Alu -17 296 2 1429 257 80 66 chr4 48976052 48976356 -135312306 + L1MEc LINE L1 1419 1717 -4679 826 271 11 28 chr4 48976367 48976568 -135312094 + L1MEc LINE L1 2184 2378 -3837 2137 127 0 10 chr4 48976568 48976859 -135311803 + AluSx SINE Alu 1 288 -24 826 271 11 28 chr4 48976859 48977015 -135311647 + L1MEc LINE L1 2378 2535 -3680 2237 222 24 20 chr4 48977060 48977696 -135310966 + L1MEc LINE L1 2695 3332 -2883 2521 186 18 52 chr4 48977766 48978364 -135310298 - LTR8A LTR ERV1 -30 697 120 1637 131 3 77 chr4 48978364 48978737 -135309925 - MER4A LTR ERV1 0 664 261 512 182 0 10 chr4 48978737 48978836 -135309826 - MER4A LTR ERV1 -566 98 1 8289 55 7 0 chr4 48978851 48979851 -135308811 + LTR13 LTR ERVK 1 1007 0 15759 99 39 32 chr4 48979851 48980480 -135308182 - MER4A-int LTR ERV1 -2 6596 5973 2054 111 4 4 chr4 48980480 48980807 -135307855 - AluSg SINE Alu 0 327 1 15759 99 39 32 chr4 48980807 48982022 -135306640 - MER4A-int LTR ERV1 -625 5973 4725 2056 119 0 4 chr4 48982022 48982299 -135306363 - AluSx SINE Alu -23 289 14 15759 99 39 32 chr4 48982299 48983195 -135305467 - MER4A-int LTR ERV1 -1873 4725 3836 7012 101 148 108 chr4 48983193 48984568 -135304094 - MER4A-int LTR ERV1 -2917 3681 2363 * 2184 108 3 3 chr4 48984568 48984865 -135303797 + AluSg SINE Alu 1 297 -13 7012 101 148 108 chr4 48984865 48984906 -135303756 - MER4A-int LTR ERV1 -4235 2363 2325 2031 153 3 0 chr4 48984906 48985207 -135303455 + AluSp SINE Alu 1 302 -11 7012 101 148 108 chr4 48985207 48985839 -135302823 - MER4A-int LTR ERV1 -4273 2325 1720 6116 64 6 26 chr4 48985839 48986635 -135302027 - LTR17 LTR ERV1 0 780 1 7012 101 148 108 chr4 48986635 48986891 -135301771 - MER4A-int LTR ERV1 -4878 1720 504 4230 131 50 21 chr4 48986899 48987656 -135301006 - MER4E LTR ERV1 0 779 1 970 135 31 45 chr4 48987656 48987939 -135300723 - MER4A-int LTR ERV1 -5564 1034 687 3026 99 197 1 chr4 48988077 48988452 -135300210 - MER4A-int LTR ERV1 -5761 837 537 183 42 0 0 chr4 48988452 48988476 -135300186 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3026 99 197 1 chr4 48988476 48988774 -135299888 - MER4A-int LTR ERV1 -6061 537 1 1624 125 6 91 chr4 48988777 48989097 -135299565 - MER4A LTR ERV1 0 664 372 487 153 10 10 chr4 48989141 48989239 -135299423 - MER4A LTR ERV1 -566 98 1 397 143 194 0 chr4 48989246 48989344 -135299318 - LTR8A LTR ERV1 -609 118 2 945 274 21 0 chr4 48990053 48990290 -135298372 + MIR SINE MIR 16 257 -5 2393 41 0 20 chr4 48990402 48990697 -135297965 + AluY SINE Alu 1 289 -22 195 42 0 0 chr4 48990708 48990732 -135297930 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1752 145 35 14 chr4 48991120 48991403 -135297259 - AluJb SINE Alu -18 294 6 335 238 191 14 chr4 48991451 48991598 -135297064 + MIR SINE MIR 88 260 -2 21 0 0 0 chr4 48992883 48992904 -135295758 + GC_rich Low_complexity Low_complexity 1 21 0 287 164 0 15 chr4 48993339 48993406 -135295256 + (TA)n Simple_repeat Simple_repeat 1 66 0 371 292 76 60 chr4 48994304 48994489 -135294173 - L2 LINE L2 -167 3146 2959 1841 150 29 0 chr4 48994535 48994815 -135293847 - AluSx SINE Alu -14 298 11 198 147 0 0 chr4 48994998 48995032 -135293630 - L2 LINE L2 -245 3068 3035 541 326 22 11 chr4 48995153 48995331 -135293331 - L2 LINE L2 -452 2862 2683 436 233 133 7 chr4 48995526 48995676 -135292986 + L2 LINE L2 3144 3312 -1 282 326 96 59 chr4 48995661 48995900 -135292762 - L2 LINE L2 -405 2909 2662 * 36 0 0 0 chr4 48996446 48996482 -135292180 + AT_rich Low_complexity Low_complexity 1 36 0 371 248 24 0 chr4 48996800 48996894 -135291768 - MIR3 SINE MIR -36 172 75 262 215 25 13 chr4 48996962 48997041 -135291621 - MER116 DNA Mariner 0 80 1 293 306 58 23 chr4 48997041 48997214 -135291448 + L1ME LINE L1 5688 5866 -304 30 0 0 0 chr4 48997402 48997432 -135291230 + AT_rich Low_complexity Low_complexity 1 30 0 1376 170 0 18 chr4 48998297 48998520 -135290142 + AluJb SINE Alu 84 302 -10 773 154 37 0 chr4 48998586 48998722 -135289940 - FLAM_C SINE Alu -2 141 1 2094 90 17 21 chr4 48999481 48999769 -135288893 - AluSx SINE Alu -3 309 23 2005 150 7 7 chr4 48999786 49000092 -135288570 - AluJb SINE Alu -5 307 2 486 301 84 25 chr4 49000174 49000460 -135288202 - MER102a DNA MER1_type -25 305 3 23499 41 42 3 chr4 49001217 49004322 -135284340 - L1P LINE L1 -2906 3240 13 1044 166 56 123 chr4 49004322 49004768 -135283894 - Charlie4a DNA MER1_type -59 449 34 1029 172 106 5 chr4 49004798 49004996 -135283666 + MER20 DNA MER1_type 1 218 -1 1248 197 238 6 chr4 49005565 49005930 -135282732 + MER31B LTR ERV1 7 456 -10 17190 130 82 32 chr4 49006167 49009928 -135278734 + L1ME3A LINE L1 2059 6047 -123 1903 144 6 49 chr4 49009928 49010254 -135278408 - AluSx SINE Alu 0 312 1 17190 130 82 32 chr4 49010254 49010360 -135278302 + L1ME3A LINE L1 6047 6146 -24 2170 103 10 3 chr4 49011165 49011455 -135277207 - AluSx SINE Alu -20 292 1 1630 142 51 58 chr4 49012123 49012418 -135276244 - AluJb SINE Alu -19 293 1 1000 82 0 0 chr4 49013825 49013960 -135274702 - MER85 DNA T2_type -4 135 1 886 158 45 0 chr4 49014149 49014326 -135274336 - MER3 DNA MER1_type -22 187 3 619 186 145 8 chr4 49015115 49015239 -135273423 + AluJo SINE Alu 3 143 -169 2148 103 7 7 chr4 49015357 49015648 -135273014 - AluSg SINE Alu -19 291 1 2150 126 0 0 chr4 49016581 49016901 -135271761 - AluSx SINE Alu 0 320 1 2422 84 0 3 chr4 49016913 49017222 -135271440 - AluSx SINE Alu -4 308 1 643 90 0 0 chr4 49018048 49018137 -135270525 - AluSg/x SINE Alu -5 304 216 1962 120 4 0 chr4 49018137 49018404 -135270258 - AluSx SINE Alu -44 268 1 339 307 79 24 chr4 49018694 49018821 -135269841 - L2 LINE L2 0 3272 3139 1985 152 0 7 chr4 49019037 49019326 -135269336 - AluJo SINE Alu -23 289 3 1886 132 10 0 chr4 49021472 49021760 -135266902 + AluJb SINE Alu 1 291 -21 1831 183 0 0 chr4 49022738 49023028 -135265634 - AluSx SINE Alu -20 292 3 23 33 0 0 chr4 49023179 49023209 -135265453 + AT_rich Low_complexity Low_complexity 1 30 0 663 209 195 47 chr4 49023857 49024046 -135264616 - MIR SINE MIR -3 259 33 838 176 11 59 chr4 49024046 49024233 -135264429 - MER5B DNA MER1_type 0 178 1 663 209 195 47 chr4 49024233 49024258 -135264404 - MIR SINE MIR -229 33 13 374 232 0 0 chr4 49024933 49025002 -135263660 + L2 LINE L2 3231 3299 -14 188 200 20 0 chr4 49025012 49025062 -135263600 + GA-rich Low_complexity Low_complexity 1 51 0 4573 84 34 12 chr4 49025159 49025827 -135262835 + LTR8 LTR ERV1 1 683 -8 378 0 0 0 chr4 49026585 49026627 -135262035 + (CA)n Simple_repeat Simple_repeat 1 42 0 24 0 0 0 chr4 49027023 49027047 -135261615 + AT_rich Low_complexity Low_complexity 1 24 0 29 28 0 0 chr4 49027462 49027498 -135261164 + AT_rich Low_complexity Low_complexity 1 36 0 1070 268 45 43 chr4 49027522 49027943 -135260719 + L2 LINE L2 2152 2573 -741 3001 133 38 64 chr4 49028165 49028560 -135260102 + MER4B LTR ERV1 1 376 -234 4526 146 64 9 chr4 49028560 49029343 -135259319 + LTR1B LTR ERV1 1 826 0 3001 133 38 64 chr4 49029343 49029573 -135259089 + MER4B LTR ERV1 376 610 0 254 246 0 0 chr4 49029594 49029655 -135259007 + MIR SINE MIR 125 185 -77 518 301 92 46 chr4 49029660 49029942 -135258720 - L2 LINE L2 0 3313 3019 22 0 0 0 chr4 49030013 49030035 -135258627 + AT_rich Low_complexity Low_complexity 1 22 0 1527 176 0 16 chr4 49030109 49030359 -135258303 - AluJb SINE Alu -32 280 35 2403 162 138 62 chr4 49031498 49032225 -135256437 + LTR1B LTR ERV1 1 785 0 535 233 42 0 chr4 49032229 49032349 -135256313 - MIR SINE MIR -57 205 81 226 360 22 11 chr4 49032350 49032439 -135256223 - MIR SINE MIR -153 109 20 2004 152 7 3 chr4 49033451 49033761 -135254901 - AluSx SINE Alu -1 311 1 1706 239 66 44 chr4 49033772 49034650 -135254012 + L1ME3A LINE L1 5036 5953 -217 25 51 0 0 chr4 49034687 49034726 -135253936 + AT_rich Low_complexity Low_complexity 1 39 0 2255 117 0 3 chr4 49035409 49035718 -135252944 - AluSx SINE Alu -4 308 1 264 211 0 0 chr4 49036380 49036437 -135252225 - L1ME LINE L1 -552 5569 5513 585 247 199 81 chr4 49036605 49036986 -135251676 - L2 LINE L2 0 3313 2888 294 268 8 98 chr4 49036990 49037113 -135251549 - L2 LINE L2 -22 3291 3180 505 320 202 38 chr4 49037399 49037522 -135251140 - L2 LINE L2 -482 2832 2731 2332 114 3 0 chr4 49037522 49037830 -135250832 - AluSq SINE Alu -4 309 1 505 320 202 38 chr4 49037830 49038755 -135249907 - L2 LINE L2 -583 2731 1612 841 280 53 7 chr4 49040544 49040848 -135247814 - LTR16C LTR ERVL -85 406 89 312 316 38 51 chr4 49040935 49041093 -135247569 - MIR3 SINE MIR -47 161 6 809 320 96 37 chr4 49042421 49042532 -135246130 + L1MC/D LINE L1 2761 2864 -3282 2179 125 0 25 chr4 49042532 49042852 -135245810 - AluSx SINE Alu 0 312 1 809 320 96 37 chr4 49042852 49043440 -135245222 + L1MC/D LINE L1 2864 3501 -2645 2177 83 0 60 chr4 49043446 49043760 -135244902 - AluSc SINE Alu -14 295 1 2522 47 0 0 chr4 49043773 49044071 -135244591 - AluY SINE Alu -13 298 1 474 297 56 3 chr4 49044319 49044605 -135244057 + L1MC4a LINE L1 5674 5974 -1834 319 267 92 37 chr4 49044963 49045180 -135243482 + L1MC/D LINE L1 3587 3815 -2331 35 83 0 0 chr4 49045182 49045266 -135243396 + AT_rich Low_complexity Low_complexity 1 84 0 2409 89 0 6 chr4 49045566 49045880 -135242782 - AluSx SINE Alu 0 312 1 548 328 115 15 chr4 49045923 49046322 -135242340 + L1MC/D LINE L1 5313 5751 -2057 1781 150 11 11 chr4 49047521 49047807 -135240855 + AluJb SINE Alu 1 286 -26 749 21 83 17 chr4 49047807 49048090 -135240572 + (TA)n Simple_repeat Simple_repeat 1 301 0 180 0 0 0 chr4 49048089 49048109 -135240553 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 26 50 0 0 chr4 49048456 49048496 -135240166 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr4 49048603 49048631 -135240031 + AT_rich Low_complexity Low_complexity 1 28 0 943 212 8 25 chr4 49048936 49049172 -135239490 + L1PB4 LINE L1 5911 6142 -14 287 312 58 19 chr4 49049220 49049374 -135239288 + L2 LINE L2 2805 2964 -308 712 82 0 10 chr4 49049582 49049680 -135238982 - U6 snRNA snRNA -10 97 1 1289 91 5 43 chr4 49051032 49051240 -135237422 - L1PA11 LINE L1 -1 6173 5974 2149 75 0 31 chr4 49051273 49051588 -135237074 + AluY SINE Alu 1 306 0 308 341 42 12 chr4 49051876 49052019 -135236643 - MIR SINE MIR -86 122 23 250 200 73 0 chr4 49052047 49052102 -135236560 + MIR SINE MIR 202 260 -2 927 151 0 27 chr4 49052674 49052820 -135235842 - FLAM_C SINE Alu -1 142 1 457 67 0 0 chr4 49052846 49052906 -135235756 - U6 snRNA snRNA -47 60 1 281 291 38 0 chr4 49053484 49053563 -135235099 + MIR3 SINE MIR 121 202 -6 253 179 0 18 chr4 49054414 49054470 -135234192 - L1P5 LINE L1 -319 5837 5783 339 322 79 9 chr4 49054484 49054711 -135233951 - L1ME LINE L1 -395 5726 5484 456 235 44 0 chr4 49055197 49055333 -135233329 - MER117 DNA MER1_type -53 144 3 555 283 14 7 chr4 49055517 49055662 -135233000 - MIR SINE MIR -109 153 8 241 254 68 0 chr4 49056560 49056619 -135232043 - L2 LINE L2 -3 3269 3207 231 347 111 7 chr4 49056930 49057074 -135231588 + MIR SINE MIR 73 231 -31 752 277 40 0 chr4 49057181 49057413 -135231249 + MIR SINE MIR 19 259 -3 291 333 66 51 chr4 49057491 49057764 -135230898 - L2 LINE L2 -62 3210 2934 539 220 7 92 chr4 49058379 49058520 -135230142 + MER5B DNA MER1_type 2 130 -48 3051 58 0 0 chr4 49058526 49058903 -135229759 - L1PA8 LINE L1 -2 6170 5794 1765 159 7 26 chr4 49059056 49059364 -135229298 + AluJb SINE Alu 1 302 -10 390 244 94 47 chr4 49059457 49059611 -135229051 + MIR3 SINE MIR 2 165 -62 626 287 11 15 chr4 49059619 49059819 -135228843 + MIR SINE MIR 64 261 -1 952 254 150 41 chr4 49059884 49060352 -135228310 - LTR33 LTR ERVL -2 519 1 2087 121 0 16 chr4 49060371 49060677 -135227985 - AluSx SINE Alu -11 301 1 1635 305 63 11 chr4 49060753 49061389 -135227273 - ERVL LTR ERVL -508 5256 4588 1463 321 75 12 chr4 49061477 49062131 -135226531 - ERVL LTR ERVL -1749 4015 3321 298 294 137 14 chr4 49062370 49062516 -135226146 - LTR33 LTR ERVL -31 490 327 252 163 0 41 chr4 49063012 49063061 -135225601 + CT-rich Low_complexity Low_complexity 2 48 0 264 197 0 84 chr4 49063403 49063474 -135225188 - MER102a DNA MER1_type -35 295 231 210 305 21 0 chr4 49063483 49063578 -135225084 + L2 LINE L2 1582 1678 -1636 180 176 0 0 chr4 49063694 49063728 -135224934 + (TA)n Simple_repeat Simple_repeat 2 35 0 347 182 13 0 chr4 49063749 49063826 -135224836 + (TA)n Simple_repeat Simple_repeat 2 79 0 2083 122 0 0 chr4 49063925 49064212 -135224450 - AluSx SINE Alu -13 299 13 2725 251 124 45 chr4 49064236 49064898 -135223764 + L2 LINE L2 1792 2400 -913 2186 159 6 3 chr4 49064898 49065237 -135223425 + MER2 DNA MER2_type 1 340 -4 895 138 13 0 chr4 49065245 49065397 -135223265 + L1MB3 LINE L1 6028 6181 -2 2725 251 124 45 chr4 49065397 49066135 -135222527 + L2 LINE L2 2406 3301 -12 189 0 0 0 chr4 49066138 49066159 -135222503 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 589 217 184 0 chr4 49067023 49067175 -135221487 - MIR SINE MIR -62 200 21 953 171 20 130 chr4 49067565 49067811 -135220851 - MER20 DNA MER1_type 0 219 1 338 250 0 12 chr4 49067874 49067954 -135220708 + L2 LINE L2 3229 3307 -6 385 215 162 42 chr4 49068445 49068636 -135220026 - MIR SINE MIR -7 255 42 2004 186 22 5 chr4 49069155 49069526 -135219136 - MLT2D LTR ERVL -37 377 1 1941 131 24 6 chr4 49069546 49069892 -135218770 + Tigger2 DNA MER2_type 4 2641 -77 2127 123 3 10 chr4 49069936 49070237 -135218425 - AluSx SINE Alu -13 299 1 2498 59 3 10 chr4 49071996 49072301 -135216361 - AluY SINE Alu -8 303 1 1133 252 164 36 chr4 49073659 49074136 -135214526 - MLT1F LTR MaLR -4 538 1 216 263 53 26 chr4 49074304 49074380 -135214282 + MER5A DNA MER1_type 111 188 -1 710 170 0 18 chr4 49074752 49074864 -135213798 - FRAM SINE Alu -12 164 55 377 257 171 11 chr4 49075139 49075314 -135213348 - L3b LINE CR1 -157 1426 1224 221 276 0 0 chr4 49075994 49076052 -135212610 + (TA)n Simple_repeat Simple_repeat 1 58 0 2258 102 14 0 chr4 49076101 49076394 -135212268 + AluSx SINE Alu 1 297 -15 360 335 82 6 chr4 49076403 49076585 -135212077 + MIR SINE MIR 54 249 -13 186 43 0 0 chr4 49077165 49077188 -135211474 + (TG)n Simple_repeat Simple_repeat 2 24 0 382 319 64 6 chr4 49077882 49078039 -135210623 - MIR3 SINE MIR -3 205 40 2889 73 17 111 chr4 49078683 49079151 -135209511 + L1PA10 LINE L1 5737 6160 -8 29 47 0 0 chr4 49080243 49080286 -135208376 + AT_rich Low_complexity Low_complexity 1 43 0 532 260 162 15 chr4 49081431 49081635 -135207027 + MIR SINE MIR 2 235 -27 702 246 67 33 chr4 49082504 49082744 -135205918 - Tigger8 DNA MER2_type -187 479 232 591 274 111 19 chr4 49083253 49083461 -135205201 - Tigger8 DNA MER2_type -429 237 11 279 332 112 24 chr4 49083632 49083837 -135204825 + L2 LINE L2 2804 3026 -287 818 123 8 0 chr4 49083952 49084074 -135204588 - AluSc SINE Alu -186 123 1 889 206 86 19 chr4 49084789 49084998 -135203664 + MIR SINE MIR 3 225 -37 1940 127 42 0 chr4 49085036 49085320 -135203342 + AluJb SINE Alu 1 296 -16 228 203 16 31 chr4 49085553 49085617 -135203045 + GA-rich Low_complexity Low_complexity 5 67 0 311 309 75 70 chr4 49085768 49085969 -135202693 + MIR SINE MIR 14 215 -47 364 250 14 97 chr4 49088050 49088194 -135200468 + L2 LINE L2 3137 3268 -4 1055 148 67 22 chr4 49088303 49088526 -135200136 + L1M4 LINE L1 5584 5816 -368 205 292 104 0 chr4 49088922 49089018 -135199644 - MIR SINE MIR 0 262 157 1856 140 36 47 chr4 49089024 49089388 -135199274 + L1MB8 LINE L1 5814 6173 -5 4832 87 11 3 chr4 49089794 49090424 -135198238 - L1PA13 LINE L1 -5 6158 5524 259 289 121 91 chr4 49091186 49091748 -135196914 + L2 LINE L2 2683 3265 -7 2042 147 0 0 chr4 49092611 49092903 -135195759 - AluSx SINE Alu -20 292 1 1891 123 0 42 chr4 49093260 49093545 -135195117 + AluSx SINE Alu 1 273 -39 351 0 0 0 chr4 49093552 49093591 -135195071 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 760 212 75 55 chr4 49093597 49093830 -135194832 - MIR SINE MIR 0 262 20 243 280 65 32 chr4 49094039 49094132 -135194530 - MIR3 SINE MIR -5 203 108 736 109 0 0 chr4 49094546 49094647 -135194015 + HY3 scRNA scRNA 1 101 0 949 70 85 8 chr4 49094650 49094779 -135193883 - MER85 DNA T2_type 0 139 1 253 278 22 22 chr4 49095187 49095277 -135193385 + LTR23-int LTR ERV1 1305 1394 -3729 372 221 41 41 chr4 49095309 49095431 -135193231 + LTR57-int LTR ERVL 1011 1132 -4211 * 983 156 59 21 chr4 49095323 49095509 -135193153 + LTR23-int LTR ERV1 3082 3274 -3057 706 204 11 91 chr4 49095507 49095782 -135192880 + LTR23-int LTR ERV1 3462 3714 -2617 * 6299 185 25 47 chr4 49095798 49097252 -135191410 + LTR23-int LTR ERV1 1215 5442 -1316 878 171 103 0 chr4 49097526 49097701 -135190961 + LTR47A LTR ERVL 260 452 0 342 285 142 38 chr4 49097941 49098257 -135190405 - L1ME4a LINE L1 -59 6062 5714 1987 167 3 0 chr4 49098633 49098927 -135189735 - AluSx SINE Alu -17 295 1 1274 126 33 14 chr4 49100288 49100502 -135188160 - MSTB1 LTR MaLR -22 410 193 1158 125 0 0 chr4 49100502 49100662 -135188000 - AluSg/x SINE Alu -11 301 142 1997 107 48 7 chr4 49100665 49100954 -135187708 - AluSq SINE Alu -12 301 1 813 203 30 41 chr4 49100954 49101151 -135187511 - MSTB1 LTR MaLR -231 195 1 807 271 30 5 chr4 49101151 49101350 -135187312 - MIR SINE MIR -35 227 24 239 277 89 30 chr4 49101375 49101476 -135187186 - MIR SINE MIR -122 140 34 2226 131 0 0 chr4 49101556 49101932 -135186730 + AluSx SINE Alu 1 376 0 297 75 0 0 chr4 49101938 49101978 -135186684 + (GGGA)n Simple_repeat Simple_repeat 3 42 0 21 0 0 0 chr4 49102709 49102730 -135185932 + AT_rich Low_complexity Low_complexity 1 21 0 3794 73 7 0 chr4 49102750 49103200 -135185462 + MLT2A2 LTR ERVL 1 453 0 488 234 155 50 chr4 49103974 49104213 -135184449 + L1ME LINE L1 5526 5789 -332 194 375 0 0 chr4 49104228 49104300 -135184362 + L2 LINE L2 3240 3311 -2 410 292 42 52 chr4 49105033 49105225 -135183437 - MIR SINE MIR -53 209 20 287 351 69 23 chr4 49105361 49105535 -135183127 + MER5A DNA MER1_type 7 188 -1 1179 259 103 76 chr4 49105548 49105827 -135182835 + L1MC5 LINE L1 6479 6749 -1212 2075 129 0 28 chr4 49105827 49106144 -135182518 + AluSx SINE Alu 3 310 -2 1179 259 103 76 chr4 49106144 49106951 -135181711 + L1MC5 LINE L1 6749 7593 -368 308 261 15 0 chr4 49106991 49107056 -135181606 + Zaphod DNA AcHobo 3 68 -3963 1151 266 161 52 chr4 49107085 49107562 -135181100 + MER115 DNA AcHobo 164 692 -1 335 161 0 37 chr4 49108323 49108404 -135180258 + (CATATA)n Simple_repeat Simple_repeat 1 78 0 237 229 0 0 chr4 49108467 49108515 -135180147 - L1MC4 LINE L1 -1342 6700 6653 485 214 69 42 chr4 49110103 49110467 -135178195 + MLT1J LTR MaLR 64 445 -1 2369 103 0 0 chr4 49111874 49112175 -135176487 + AluSx SINE Alu 1 301 -11 323 266 153 0 chr4 49112947 49113071 -135175591 - MIR SINE MIR -3 259 117 822 218 6 18 chr4 49113678 49113843 -135174819 - FRAM SINE Alu -13 163 1 250 313 50 44 chr4 49114216 49114376 -135174286 - MIR SINE MIR 0 262 102 2217 132 0 0 chr4 49115619 49115922 -135172740 + AluSx SINE Alu 1 303 -9 215 284 15 0 chr4 49116016 49116083 -135172579 + (TAG)n Simple_repeat Simple_repeat 3 70 0 775 192 179 35 chr4 49116083 49116312 -135172350 - MIR SINE MIR 0 262 1 227 298 96 0 chr4 49116849 49116943 -135171719 + MIR SINE MIR 63 165 -97 1969 148 0 7 chr4 49117672 49117963 -135170699 + AluSx SINE Alu 1 289 -23 944 170 0 7 chr4 49118634 49118781 -135169881 - THE1B LTR MaLR -218 146 1 1200 148 15 83 chr4 49119459 49119723 -135168939 + LTR1 LTR ERV1 1 246 -539 12995 31 0 0 chr4 49120198 49121733 -135166929 + L1P LINE L1 2938 4472 -1674 580 168 0 0 chr4 49172114 49172215 -135116447 + HY3 scRNA scRNA 1 101 0 907 85 85 8 chr4 49172218 49172347 -135116315 - MER85 DNA T2_type 0 139 1 462 172 46 67 chr4 49172877 49173035 -135115627 + LTR49-int LTR ERV1 994 3222 -3109 186 191 0 0 chr4 49173232 49173274 -135115388 + (CA)n Simple_repeat Simple_repeat 1 42 0 1866 166 0 0 chr4 49173556 49173845 -135114817 + AluSx SINE Alu 1 289 -23 371 278 232 7 chr4 49173906 49174057 -135114605 - MIR3 SINE MIR -5 203 19 335 161 0 37 chr4 49176367 49176448 -135112214 + (CATATA)n Simple_repeat Simple_repeat 1 78 0 237 229 0 0 chr4 49176511 49176559 -135112103 - L1MC4 LINE L1 -1342 6700 6653 4627 240 27 15 chr4 49177106 49178156 -135110506 - MER4B-int LTR ERV1 -1915 2276 1215 588 169 6 54 chr4 49178138 49178304 -135110358 - MER4B-int LTR ERV1 -3649 3109 2952 * 1017 65 0 0 chr4 49179140 49179264 -135109398 - L1PA5 LINE L1 -5 6149 6026 383 318 80 0 chr4 49180483 49180659 -135108003 + MIR SINE MIR 73 262 0 3036 156 95 2 chr4 49180670 49181184 -135107478 + MER68 LTR ERV1 1 562 0 23 33 0 0 chr4 49182122 49182152 -135106510 + AT_rich Low_complexity Low_complexity 1 30 0 2152 131 3 6 chr4 49182190 49182503 -135106159 - AluSx SINE Alu 0 312 1 243 88 0 0 chr4 49182723 49182757 -135105905 + (T)n Simple_repeat Simple_repeat 1 34 0 395 175 0 0 chr4 49183314 49183377 -135105285 + Tigger2 DNA MER2_type 1 63 -2655 2808 115 21 11 chr4 49183383 49183817 -135104845 + Tigger2 DNA MER2_type 2280 2717 -1 583 209 0 0 chr4 49183955 49184065 -135104597 - MER46C DNA MER2_type -56 282 173 224 200 0 0 chr4 49184065 49184105 -135104557 + (CA)n Simple_repeat Simple_repeat 1 40 0 2162 119 7 3 chr4 49184387 49184689 -135103973 + AluSx SINE Alu 1 303 -9 1824 132 51 0 chr4 49186534 49186807 -135101855 + AluSx SINE Alu 1 287 -25 2349 70 0 3 chr4 49186819 49187129 -135101533 + AluSq SINE Alu 1 309 0 247 231 115 0 chr4 49187355 49187433 -135101229 + MIR SINE MIR 109 195 -67 494 230 32 24 chr4 49188040 49188166 -135100496 - MER5A DNA MER1_type -1 188 62 2446 63 0 3 chr4 49188499 49188800 -135099862 + AluY SINE Alu 1 300 -11 2091 144 0 0 chr4 49189037 49189343 -135099319 + AluSx SINE Alu 7 312 0 382 278 232 7 chr4 49189380 49189531 -135099131 - MIR3 SINE MIR -5 203 19 4266 246 146 57 chr4 49189657 49190367 -135098295 + HAL1 LINE L1 1 647 -1860 844 187 0 8 chr4 49190367 49190501 -135098161 - FLAM_A SINE Alu 0 133 1 4266 246 146 57 chr4 49190501 49191938 -135096724 + HAL1 LINE L1 647 2350 -157 1720 171 146 31 chr4 49191938 49192383 -135096279 - LTR54B LTR ERV1 -2 496 1 4266 246 146 57 chr4 49192383 49192432 -135096230 + HAL1 LINE L1 2350 2393 -114 382 271 39 46 chr4 49192784 49192997 -135095665 - MIR SINE MIR 0 262 4 2576 46 0 3 chr4 49193304 49193606 -135095056 - AluY SINE Alu -10 301 1 23 19 0 39 chr4 49193937 49193949 -135094713 + AT_rich Low_complexity Low_complexity 1 12 -38 748 120 0 0 chr4 49193949 49194057 -135094605 + L1MA5A LINE L1 6190 6297 0 23 19 0 39 chr4 49194057 49194074 -135094588 + AT_rich Low_complexity Low_complexity 12 28 -22 1902 153 40 0 chr4 49194074 49194374 -135094288 + AluSx SINE Alu 1 312 0 23 19 0 39 chr4 49194374 49194395 -135094267 + AT_rich Low_complexity Low_complexity 28 50 0 194 215 13 0 chr4 49195674 49195753 -135092909 + (TA)n Simple_repeat Simple_repeat 2 81 0 493 230 0 14 chr4 49195754 49195871 -135092791 + MLT1J2 LTR MaLR 68 163 -287 262 219 184 26 chr4 49195947 49196061 -135092601 + MLT1J LTR MaLR 323 454 -57 736 223 95 65 chr4 49196764 49197004 -135091658 + L1MC5 LINE L1 7439 7670 -291 219 36 0 0 chr4 49197004 49197032 -135091630 + (TG)n Simple_repeat Simple_repeat 1 28 0 736 223 95 65 chr4 49197032 49197252 -135091410 + L1MC5 LINE L1 7670 7913 -48 1397 263 162 10 chr4 49198247 49198752 -135089910 + MLT1G LTR MaLR 9 590 0 252 292 0 31 chr4 49199365 49199430 -135089232 + L2 LINE L2 3249 3311 -2 203 316 59 37 chr4 49199890 49200026 -135088636 + MIR3 SINE MIR 66 204 -4 594 319 92 0 chr4 49200324 49200509 -135088153 + MIR SINE MIR 47 248 -14 1887 84 0 0 chr4 49200767 49201005 -135087657 + L1PA6 LINE L1 5917 6154 0 2430 87 56 34 chr4 49201260 49201616 -135087046 - THE1B LTR MaLR 0 364 1 319 311 66 16 chr4 49201657 49201779 -135086883 - L2 LINE L2 0 3272 3145 228 343 0 0 chr4 49201905 49201972 -135086690 - MIR3 SINE MIR -39 169 103 2096 120 0 0 chr4 49202039 49202338 -135086324 + AluSc SINE Alu 1 299 -10 237 108 0 0 chr4 49202431 49202468 -135086194 + (CA)n Simple_repeat Simple_repeat 2 38 0 258 192 0 19 chr4 49202518 49202570 -135086092 + MIR SINE MIR 183 233 -29 1977 136 7 0 chr4 49202856 49203150 -135085512 + AluSq SINE Alu 1 296 -17 957 239 4 4 chr4 49203213 49203452 -135085210 + L1M4 LINE L1 4401 4639 -1507 325 214 145 46 chr4 49203552 49203683 -135084979 + L1MB5 LINE L1 3356 3499 -2647 5500 74 30 54 chr4 49203687 49204790 -135083872 + SVA Other Other 1 868 -520 331 255 226 0 chr4 49205378 49205484 -135083178 - FLAM_C SINE Alu 0 133 4 4252 171 35 77 chr4 49206001 49206997 -135081665 + LTR13 LTR ERVK 1 954 0 1338 137 0 0 chr4 49207124 49207306 -135081356 + AluJb SINE Alu 108 289 -23 1131 130 96 0 chr4 49207321 49207498 -135081164 + Tigger5 DNA MER2_type 2128 2321 -2 417 318 91 11 chr4 49207627 49207803 -135080859 + MIR3 SINE MIR 11 200 -8 327 254 9 21 chr4 49207894 49207999 -135080663 + L2 LINE L2 2897 3004 -309 345 300 84 53 chr4 49208384 49208611 -135080051 - MARNA DNA Mariner -111 475 242 2225 112 0 0 chr4 49208897 49209192 -135079470 - AluSg SINE Alu -15 295 1 4146 185 66 16 chr4 49209491 49210788 -135077874 + L1MB5 LINE L1 4822 6184 0 288 187 56 84 chr4 49211054 49211161 -135077501 - MLT1H LTR MaLR -2 547 444 204 255 0 0 chr4 49211728 49211775 -135076887 + T-rich Low_complexity Low_complexity 1 47 0 901 312 40 9 chr4 49212896 49213245 -135075417 + L2 LINE L2 2213 2572 -742 699 246 71 133 chr4 49213256 49213822 -135074840 + MLT1H LTR MaLR 1 531 -18 936 276 68 45 chr4 49213846 49214543 -135074119 + L2 LINE L2 2588 3305 -8 627 299 79 17 chr4 49214936 49215177 -135073485 + MIR SINE MIR 6 261 -1 452 219 42 25 chr4 49215335 49215454 -135073208 + MIR3 SINE MIR 14 134 -74 192 77 0 0 chr4 49215795 49215821 -135072841 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 4534 159 14 28 chr4 49215940 49216738 -135071924 - MER54B LTR ERVL -6 787 1 820 217 11 79 chr4 49216738 49217003 -135071659 + MER34 LTR ERV1 296 542 0 415 263 51 0 chr4 49217287 49217405 -135071257 - MIR SINE MIR -111 151 28 186 346 39 19 chr4 49217466 49217622 -135071040 + L2 LINE L2 2224 2382 -932 2389 103 0 6 chr4 49217683 49217995 -135070667 - AluSg SINE Alu 0 310 1 236 248 9 115 chr4 49218041 49218154 -135070508 - MIR SINE MIR -4 258 158 1370 335 97 12 chr4 49218308 49218746 -135069916 - L2 LINE L2 -195 3077 2678 1322 201 84 86 chr4 49218746 49219258 -135069404 + MLT1J LTR MaLR 1 511 0 1370 335 97 12 chr4 49219258 49219779 -135068883 - L2 LINE L2 -594 2678 2040 1383 26 0 0 chr4 49220181 49220335 -135068327 - AluYa5 SINE Alu -8 303 150 1957 135 0 0 chr4 49220512 49220779 -135067883 + AluSx SINE Alu 1 267 -45 813 249 5 66 chr4 49220830 49221102 -135067560 - MIR SINE MIR -4 258 4 2183 126 0 3 chr4 49221310 49221612 -135067050 + AluSx SINE Alu 1 301 -11 2877 148 32 55 chr4 49222280 49222795 -135065867 + MER68 LTR ERV1 1 503 -59 2176 146 3 40 chr4 49222795 49223145 -135065517 - MER1B DNA MER1_type 0 337 1 2877 148 32 55 chr4 49223145 49223198 -135065464 + MER68 LTR ERV1 503 556 -6 376 331 57 2 chr4 49223202 49223386 -135065276 + MIR SINE MIR 1 194 -63 312 209 60 0 chr4 49223421 49223488 -135065174 - MER91 DNA MER1_type -66 74 4 4026 178 40 13 chr4 49223771 49224543 -135064119 + L1MB5 LINE L1 5374 6166 -8 417 264 51 15 chr4 49224609 49224831 -135063831 + L1ME LINE L1 5259 5481 -689 1515 201 3 49 chr4 49224849 49225173 -135063489 + AluJo SINE Alu 1 309 -3 190 347 121 25 chr4 49225253 49225452 -135063210 - L2 LINE L2 -240 3032 2815 2005 148 0 16 chr4 49225687 49225992 -135062670 + AluJb SINE Alu 1 300 -12 311 291 63 44 chr4 49226000 49226158 -135062504 + HAL1 LINE L1 10 170 -2337 403 259 167 12 chr4 49226394 49226556 -135062106 - MIR3 SINE MIR -7 201 15 452 282 209 33 chr4 49226570 49227058 -135061604 + L2 LINE L2 2705 3313 0 23 0 0 0 chr4 49227372 49227395 -135061267 + AT_rich Low_complexity Low_complexity 1 23 0 1551 139 8 45 chr4 49227541 49227807 -135060855 + AluJo SINE Alu 35 290 -22 485 205 10 146 chr4 49228161 49228366 -135060296 - MER69A DNA AcHobo 0 177 1 1639 179 7 20 chr4 49228387 49228683 -135059979 + AluJo SINE Alu 1 292 -20 390 57 0 0 chr4 49228684 49228737 -135059925 + (GGA)n Simple_repeat Simple_repeat 1 53 0 892 267 64 4 chr4 49229131 49229367 -135059295 - MIR SINE MIR 0 262 13 24 0 0 0 chr4 49229603 49229627 -135059035 + AT_rich Low_complexity Low_complexity 1 24 0 2133 131 0 3 chr4 49230010 49230308 -135058354 + AluSx SINE Alu 1 297 -15 186 43 0 0 chr4 49230308 49230331 -135058331 + (TA)n Simple_repeat Simple_repeat 2 24 0 282 281 62 27 chr4 49230819 49230965 -135057697 - MIR3 SINE MIR -14 194 44 207 262 233 10 chr4 49231042 49231145 -135057517 + L2 LINE L2 3186 3311 -2 508 233 101 50 chr4 49231987 49232146 -135056516 - FAM SINE Alu -18 167 1 958 127 27 7 chr4 49232594 49232744 -135055918 + MER47A DNA MER2_type 1 153 -213 1892 163 0 7 chr4 49232744 49233039 -135055623 + AluJb SINE Alu 1 293 -19 2007 143 0 0 chr4 49233045 49233338 -135055324 + AluSx SINE Alu 1 293 -19 276 71 24 0 chr4 49233356 49233398 -135055264 + MER47A DNA MER2_type 141 183 -183 281 51 26 0 chr4 49233400 49233439 -135055223 + Alu SINE Alu 2 41 -261 690 155 28 72 chr4 49234317 49234498 -135054164 - HAL1 LINE L1 -183 2324 2152 2241 110 0 0 chr4 49234517 49234808 -135053854 - AluSp SINE Alu -6 307 17 2174 121 0 13 chr4 49235323 49235629 -135053033 - AluSx SINE Alu -10 302 1 337 379 39 0 chr4 49235698 49235851 -135052811 + L2 LINE L2 2902 3060 -212 1021 271 137 31 chr4 49236835 49237260 -135051402 - MLT1K LTR MaLR -52 536 67 884 234 54 38 chr4 49237330 49237569 -135051093 + MIR SINE MIR 20 262 0 215 297 189 0 chr4 49237762 49237836 -135050826 - L2 LINE L2 -10 3262 3175 2030 133 0 35 chr4 49238055 49238372 -135050290 + AluJb SINE Alu 1 306 -6 550 340 19 0 chr4 49238377 49238536 -135050126 - MER91B DNA MER1_type -28 162 1 998 187 93 16 chr4 49238651 49238897 -135049765 + Charlie5 DNA MER1_type 1 265 -2347 859 114 69 6 chr4 49238892 49239067 -135049595 + Charlie5 DNA MER1_type 2400 2585 -27 * 614 259 96 19 chr4 49239214 49239446 -135049216 + MIR SINE MIR 15 252 -10 2294 105 7 3 chr4 49239890 49240194 -135048468 - AluSx SINE Alu -7 305 1 22 0 0 0 chr4 49240302 49240324 -135048338 + AT_rich Low_complexity Low_complexity 1 22 0 257 257 68 0 chr4 49240754 49240828 -135047834 + MIR SINE MIR 85 163 -99 676 91 30 0 chr4 49241035 49241134 -135047528 + L1PA14 LINE L1 6060 6161 0 2142 138 0 19 chr4 49241187 49241505 -135047157 + AluSx SINE Alu 1 312 0 1446 204 0 61 chr4 49242055 49242383 -135046279 + AluJo SINE Alu 1 308 -4 248 217 161 18 chr4 49242614 49242736 -135045926 + HAL1b LINE L1 1236 1347 -1 2259 115 0 0 chr4 49243955 49244250 -135044412 - AluSx SINE Alu -17 295 1 2049 87 70 33 chr4 49245187 49245487 -135043175 + AluSx SINE Alu 1 311 -1 354 308 75 6 chr4 49245537 49245696 -135042966 + MER117 DNA MER1_type 13 182 -15 630 255 69 23 chr4 49245907 49246123 -135042539 + HAL1 LINE L1 233 458 -2049 1307 239 88 51 chr4 49246140 49246395 -135042267 + HAL1 LINE L1 518 762 -1745 2168 99 3 7 chr4 49246395 49246689 -135041973 - AluSx SINE Alu -16 296 4 1307 239 88 51 chr4 49246689 49246919 -135041743 + HAL1 LINE L1 762 1021 -1486 225 191 0 0 chr4 49247126 49247173 -135041489 - LTR66 LTR ERVL -169 441 395 296 289 0 0 chr4 49247178 49247268 -135041394 + L1MC4 LINE L1 6614 6703 -1339 * 319 173 99 0 chr4 49247188 49247269 -135041393 - L1MC4 LINE L1 -1339 6703 6615 2276 108 0 0 chr4 49247269 49247566 -135041096 - AluSx SINE Alu -15 297 1 1766 229 77 38 chr4 49247566 49248098 -135040564 + HAL1 LINE L1 1280 1832 -675 830 153 6 23 chr4 49248229 49248405 -135040257 + AluYa5 SINE Alu 134 306 -5 6098 184 56 39 chr4 49248414 49248485 -135040177 - L1MDa LINE L1 -4295 2245 2177 880 149 0 22 chr4 49248485 49248639 -135040023 - FLAM_C SINE Alu 0 133 2 6098 184 56 39 chr4 49248639 49248874 -135039788 - L1MDa LINE L1 -4363 2177 1948 2046 135 0 7 chr4 49248874 49249177 -135039485 - AluSq SINE Alu -12 301 1 6098 184 56 39 chr4 49249177 49249712 -135038950 - L1MDa LINE L1 -4592 1948 1424 2194 93 0 4 chr4 49249712 49250021 -135038641 - AluSc SINE Alu 0 308 1 6098 184 56 39 chr4 49250021 49250652 -135038010 - L1MDa LINE L1 -5116 1424 744 2493 188 41 8 chr4 49251019 49251504 -135037158 - MLT1D LTR MaLR -4 501 1 343 270 10 20 chr4 49251544 49251644 -135037018 + L2 LINE L2 3178 3276 -37 267 293 24 0 chr4 49251663 49251745 -135036917 - L2 LINE L2 -310 3003 2920 822 247 78 9 chr4 49252026 49252257 -135036405 + MIR SINE MIR 16 262 0 1730 120 4 4 chr4 49252466 49252708 -135035954 + AluSx SINE Alu 60 301 -11 1021 237 72 16 chr4 49252713 49253071 -135035591 + L1M4 LINE L1 2477 2835 -3311 32784 107 12 57 chr4 49253080 49258815 -135029847 + L1PA7 LINE L1 12 5415 -739 6880 113 5 12 chr4 49258815 49259791 -135028871 - LTR5 LTR ERVK 0 969 1 32784 107 12 57 chr4 49259791 49260496 -135028166 + L1PA7 LINE L1 5415 6150 -4 1669 232 23 74 chr4 49260491 49261173 -135027489 + L1M4 LINE L1 2821 3468 -2678 * 3036 184 52 109 chr4 49261178 49262148 -135026514 + MER21A LTR ERV1 1 914 -17 1100 228 22 3 chr4 49262167 49262479 -135026183 + L1M4 LINE L1 3476 3793 -2353 737 169 118 47 chr4 49262479 49262733 -135025929 + MSTA LTR MaLR 1 272 -156 1777 155 6 23 chr4 49262734 49263088 -135025574 + L1MD1 LINE L1 5526 5873 -369 1707 150 78 3 chr4 49263345 49263678 -135024984 + L1MD1 LINE L1 5879 6236 -6 887 244 122 9 chr4 49263705 49263934 -135024728 - MIR SINE MIR -1 261 7 362 191 16 186 chr4 49263986 49264180 -135024482 + Charlie8 DNA MER1_type 170 1417 -1000 30 27 0 0 chr4 49264240 49264277 -135024385 + AT_rich Low_complexity Low_complexity 1 37 0 2400 52 35 0 chr4 49264332 49264622 -135024040 + AluY SINE Alu 2 301 -10 773 170 54 28 chr4 49264847 49265040 -135023622 + MLT1B LTR MaLR 1 183 -191 468 136 0 0 chr4 49265041 49265107 -135023555 + AluSc SINE Alu 46 111 -198 3703 68 2 59 chr4 49265107 49265187 -135023475 - MER9 LTR ERVK 0 511 428 6406 66 11 46 chr4 49265187 49266864 -135021798 + SVA Other Other 1 1386 0 3703 68 2 59 chr4 49266864 49267323 -135021339 - MER9 LTR ERVK -83 428 2 1518 109 0 5 chr4 49267323 49267524 -135021138 + AluSc SINE Alu 105 304 -5 833 179 52 61 chr4 49267540 49267752 -135020910 + MLT1B LTR MaLR 181 390 0 346 178 75 62 chr4 49267907 49268053 -135020609 + LTR16C LTR ERVL 344 491 0 1203 186 29 51 chr4 49270190 49270501 -135018161 - MER33 DNA MER1_type 0 324 21 23 86 0 0 chr4 49271434 49271492 -135017170 + AT_rich Low_complexity Low_complexity 1 58 0 2016 157 7 0 chr4 49271526 49271826 -135016836 - AluJb SINE Alu -10 302 1 21 0 0 0 chr4 49272421 49272442 -135016220 + AT_rich Low_complexity Low_complexity 1 21 0 244 95 95 0 chr4 49273668 49273710 -135014952 + L2 LINE L2 3227 3272 0 2018 128 10 7 chr4 49273858 49274154 -135014508 - AluSx SINE Alu -13 299 3 24 0 0 0 chr4 49274207 49274231 -135014431 + AT_rich Low_complexity Low_complexity 1 24 0 2529 127 22 8 chr4 49274571 49275052 -135013610 + MER1A DNA MER1_type 1 529 0 6422 108 27 26 chr4 49275108 49275143 -135013519 + L1MA3 LINE L1 4928 4961 -1344 3553 54 11 9 chr4 49275143 49275586 -135013076 - MLT2A1 LTR ERVL 0 444 1 6422 108 27 26 chr4 49275586 49276397 -135012265 + L1MA3 LINE L1 4961 5777 -528 2597 43 0 0 chr4 49276397 49276698 -135011964 + AluY SINE Alu 1 301 -10 6422 108 27 26 chr4 49276698 49277220 -135011442 + L1MA3 LINE L1 5777 6297 -8 399 298 176 10 chr4 49277257 49277747 -135010915 + L1ME4a LINE L1 5539 6109 -12 406 261 118 20 chr4 49278869 49279377 -135009285 + L1ME2 LINE L1 5153 5716 -454 315 354 62 20 chr4 49279391 49279586 -135009076 + L1ME2 LINE L1 5727 5929 -235 2142 106 10 0 chr4 49279662 49279954 -135008708 - AluSx SINE Alu -17 295 1 321 26 0 0 chr4 49280024 49280062 -135008600 + (TG)n Simple_repeat Simple_repeat 2 39 0 31 44 0 0 chr4 49280292 49280337 -135008325 + AT_rich Low_complexity Low_complexity 1 45 0 212 0 36 0 chr4 49280687 49280715 -135007947 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1572 109 92 13 chr4 49280720 49280959 -135007703 - AluSx SINE Alu -54 258 1 2103 202 36 39 chr4 49281084 49281643 -135007019 + L1MC4 LINE L1 7175 7731 -311 258 413 8 0 chr4 49282213 49282334 -135006328 + MIR3 SINE MIR 64 185 -23 1195 269 72 2 chr4 49282544 49282922 -135005740 + L1M1 LINE L1 5440 5840 -465 4534 157 85 8 chr4 49283020 49283616 -135005046 + L1MC2 LINE L1 5299 6004 -340 1693 220 116 20 chr4 49283616 49284116 -135004546 + MER44D DNA MER2_type 2 604 -1 4534 157 85 8 chr4 49284116 49284474 -135004188 + L1MC2 LINE L1 6004 6333 -11 776 181 62 0 chr4 49284870 49285030 -135003632 + FRAM SINE Alu 1 170 -6 856 287 39 8 chr4 49285167 49285527 -135003135 + L1MC4 LINE L1 6558 7009 -883 760 208 55 119 chr4 49285550 49285727 -135002935 + L1ME1 LINE L1 5869 6056 -110 2119 125 7 0 chr4 49285727 49286023 -135002639 + AluSx SINE Alu 1 298 -14 760 208 55 119 chr4 49286023 49286098 -135002564 + L1ME1 LINE L1 6056 6100 -66 13417 29 4 2 chr4 49286098 49288480 -135000182 - L1PA4 LINE L1 -1 6154 3770 760 208 55 119 chr4 49288480 49288538 -135000124 + L1ME1 LINE L1 6100 6160 -6 2384 179 31 0 chr4 49288669 49289088 -134999574 + MSTB1 LTR MaLR 1 432 0 573 264 48 9 chr4 49289088 49289332 -134999330 + L1MC5 LINE L1 7001 7252 -728 243 206 28 65 chr4 49289435 49289542 -134999120 + L1MC5 LINE L1 7260 7362 -599 234 344 47 0 chr4 49289535 49289663 -134998999 + L1ME3A LINE L1 5439 5572 -598 * 284 103 69 40 chr4 49290180 49290354 -134998308 + (TA)n Simple_repeat Simple_repeat 2 180 0 3491 195 116 85 chr4 49290354 49291120 -134997542 - L1MC4 LINE L1 -126 7916 7176 2294 92 10 3 chr4 49291120 49291415 -134997247 - AluSq SINE Alu -16 297 1 3491 195 116 85 chr4 49291415 49291772 -134996890 - L1MC4 LINE L1 -866 7176 6832 2664 29 3 0 chr4 49291772 49292080 -134996582 + AluYb8 SINE Alu 9 317 -1 3491 195 116 85 chr4 49292080 49292265 -134996397 - L1MC4 LINE L1 -1210 6832 6654 1557 119 9 0 chr4 49292265 49292483 -134996179 - AluSc SINE Alu -15 294 75 3491 195 116 85 chr4 49292483 49292573 -134996089 - L1MC4 LINE L1 -1388 6654 6472 2388 53 0 10 chr4 49292957 49293257 -134995405 + AluY SINE Alu 1 297 -14 232 143 143 0 chr4 49293782 49293873 -134994789 - L1ME4a LINE L1 -2 6119 6016 1134 164 96 36 chr4 49293954 49294204 -134994458 - AluJo SINE Alu -4 308 44 556 292 105 12 chr4 49294206 49294538 -134994124 - L1ME4a LINE L1 -239 5882 5520 397 288 158 70 chr4 49294853 49295353 -134993309 + L2 LINE L2 2434 2977 -337 971 264 84 39 chr4 49295423 49295756 -134992906 + MLT1I LTR MaLR 60 407 -2 2286 138 40 35 chr4 49295864 49296290 -134992372 + MSTA LTR MaLR 1 428 0 282 294 70 79 chr4 49296330 49296544 -134992118 + LTR67 LTR ERVL 79 290 -267 2400 109 0 3 chr4 49296686 49296999 -134991663 - AluSx SINE Alu 0 312 1 446 288 70 9 chr4 49297538 49297839 -134990823 + L1ME3A LINE L1 5548 5883 -287 597 282 69 9 chr4 49297883 49298099 -134990563 + MIR SINE MIR 1 229 -33 1504 112 173 8 chr4 49298309 49298558 -134990104 + AluSg SINE Alu 1 290 -10 254 209 15 0 chr4 49298559 49298626 -134990036 + (TA)n Simple_repeat Simple_repeat 1 68 0 2014 107 14 31 chr4 49298628 49298919 -134989743 - AluSx SINE Alu -20 292 7 1827 207 50 14 chr4 49299042 49299578 -134989084 + L1MB7 LINE L1 5626 6184 0 1977 157 3 3 chr4 49299586 49299898 -134988764 + AluJb SINE Alu 1 312 0 866 311 152 24 chr4 49300303 49300576 -134988086 + L2 LINE L2 2211 2448 -865 4492 151 50 10 chr4 49300576 49301370 -134987292 + LTR1B LTR ERV1 1 826 0 866 311 152 24 chr4 49301370 49302057 -134986605 + L2 LINE L2 2448 3308 -5 2270 78 20 3 chr4 49302188 49302481 -134986181 - AluSc SINE Alu -11 298 1 1870 204 78 13 chr4 49302597 49303058 -134985604 - LTR40a LTR ERVL -24 495 5 641 62 0 0 chr4 49304269 49304350 -134984312 - AluY SINE Alu -229 82 2 972 170 101 36 chr4 49304610 49304887 -134983775 + MER5C DNA MER1_type 30 324 0 910 241 60 57 chr4 49305407 49305783 -134982879 + L2 LINE L2 2681 3054 -259 2158 104 7 3 chr4 49305783 49306081 -134982581 + AluSx SINE Alu 1 299 -13 1811 185 0 0 chr4 49306091 49306393 -134982269 + AluJb SINE Alu 1 302 -10 910 241 60 57 chr4 49306393 49306459 -134982203 + L2 LINE L2 3062 3133 -180 835 278 107 18 chr4 49306469 49306861 -134981801 - L1MC4a LINE L1 -1756 6052 5626 2068 121 3 26 chr4 49309265 49309570 -134979092 - AluSq SINE Alu -15 298 1 714 214 51 56 chr4 49309809 49310005 -134978657 + MIR SINE MIR 19 213 -49 1718 272 90 24 chr4 49311828 49312712 -134975950 - L2 LINE L2 -6 3307 2373 193 209 47 0 chr4 49312806 49312849 -134975813 + L2 LINE L2 3264 3308 -5 315 329 107 7 chr4 49312990 49313130 -134975532 - MIR3 SINE MIR -27 181 28 281 233 0 14 chr4 49314318 49314391 -134974271 + MIR SINE MIR 188 259 -3 21 0 0 0 chr4 49314936 49314957 -134973705 + GC_rich Low_complexity Low_complexity 1 21 0 201 39 0 0 chr4 49315187 49315213 -134973449 + (CGG)n Simple_repeat Simple_repeat 2 27 0 216 0 0 0 chr4 49316192 49316216 -134972446 + (T)n Simple_repeat Simple_repeat 1 24 0 705 214 93 24 chr4 49316653 49316848 -134971814 + MIR SINE MIR 35 238 -24 421 192 128 70 chr4 49317967 49318123 -134970539 + MER103 DNA DNA 2 166 0 726 245 35 54 chr4 49318154 49318415 -134970247 + MER112 DNA MER1_type 1 256 0 486 283 24 124 chr4 49318675 49318965 -134969697 - L3 LINE CR1 -283 1294 1034 917 331 123 39 chr4 49319382 49320363 -134968299 - L3 LINE CR1 -352 1225 162 899 173 0 0 chr4 49320930 49321063 -134967599 - FLAM_C SINE Alu 0 133 1 569 93 0 0 chr4 49321302 49321377 -134967285 - Charlie3 DNA MER1_type -8 2702 2628 1368 146 0 79 chr4 49321385 49321638 -134967024 - AluJb SINE Alu -79 233 1 247 243 209 88 chr4 49321639 49321697 -134966965 - MIR SINE MIR -55 207 157 1940 133 54 18 chr4 49321697 49322029 -134966633 - L1MB3 LINE L1 -9 6174 5831 247 243 209 88 chr4 49322029 49322118 -134966544 - MIR SINE MIR -105 157 42 * 334 345 161 14 chr4 49322109 49322457 -134966205 + L3 LINE CR1 1161 1559 -18 2284 118 0 7 chr4 49322495 49322799 -134965863 + AluSx SINE Alu 1 302 -10 477 248 41 8 chr4 49322869 49322990 -134965672 - MARNA DNA Mariner -177 409 285 258 246 186 70 chr4 49323428 49323627 -134965035 - MARNA DNA Mariner -328 258 37 268 226 66 47 chr4 49323642 49323748 -134964914 + L1ME4a LINE L1 6011 6118 -3 186 200 0 146 chr4 49323898 49323953 -134964709 - L2 LINE L2 -9 3263 3217 240 263 26 26 chr4 49324030 49324106 -134964556 - MER57A LTR ERV1 -25 378 303 496 147 136 7 chr4 49326599 49326760 -134961902 - MER20 DNA MER1_type 0 219 1 2106 132 8 54 chr4 49326884 49327255 -134961407 + THE1A LTR MaLR 1 354 -1 247 297 20 30 chr4 49327292 49327393 -134961269 + MER94 DNA DNA 33 132 -2 193 302 0 0 chr4 49327402 49327445 -134961217 - L2 LINE L2 -10 3262 3220 210 332 126 36 chr4 49327874 49328121 -134960541 - L2 LINE L2 -673 2641 2373 1928 131 10 20 chr4 49328556 49328853 -134959809 - AluSx SINE Alu -18 294 1 1919 123 61 3 chr4 49328976 49329269 -134959393 - AluSg SINE Alu 0 310 1 221 227 30 0 chr4 49329833 49329899 -134958763 + (TA)n Simple_repeat Simple_repeat 2 69 0 25 51 0 0 chr4 49329939 49329978 -134958684 + AT_rich Low_complexity Low_complexity 1 39 0 235 256 26 13 chr4 49330499 49330577 -134958085 + (TATG)n Simple_repeat Simple_repeat 4 82 0 24 53 0 0 chr4 49331309 49331347 -134957315 + AT_rich Low_complexity Low_complexity 1 38 0 22 56 0 0 chr4 49331370 49331406 -134957256 + AT_rich Low_complexity Low_complexity 1 36 0 1762 157 0 50 chr4 49331631 49331804 -134956858 - AluJo SINE Alu -10 302 151 2097 118 3 20 chr4 49331804 49332109 -134956553 - AluSp SINE Alu -13 300 1 1762 157 0 50 chr4 49332109 49332253 -134956409 - AluJo SINE Alu -161 151 1 903 249 83 4 chr4 49332310 49332551 -134956111 + MIR SINE MIR 2 261 -1 2344 72 17 0 chr4 49332578 49332869 -134955793 - AluSp SINE Alu -17 296 1 2332 107 0 0 chr4 49332964 49333274 -134955388 - AluSq SINE Alu -3 310 1 23 54 0 0 chr4 49333628 49333665 -134954997 + AT_rich Low_complexity Low_complexity 1 37 0 2532 71 0 0 chr4 49334127 49334423 -134954239 + AluSg SINE Alu 1 296 -14 1376 147 34 144 chr4 49334499 49334564 -134954098 - L1MB8 LINE L1 -2 6176 6105 1898 153 7 13 chr4 49334564 49334865 -134953797 + AluSx SINE Alu 1 299 -13 1376 147 34 144 chr4 49334865 49335181 -134953481 - L1MB8 LINE L1 -73 6105 5837 323 329 43 89 chr4 49335410 49335853 -134952809 - L2 LINE L2 -254 3059 2652 2186 211 79 14 chr4 49335880 49336511 -134952151 - L1M4 LINE L1 -1443 4703 4032 355 216 52 52 chr4 49336507 49336641 -134952021 - L1M4 LINE L1 -2538 3608 3475 * 2031 137 3 3 chr4 49336664 49336971 -134951691 - AluY SINE Alu -4 307 1 24 32 0 0 chr4 49336973 49337004 -134951658 + AT_rich Low_complexity Low_complexity 1 31 0 6893 60 9 43 chr4 49337008 49337995 -134950667 - SVA Other Other 0 1386 433 1490 96 23 40 chr4 49338061 49338364 -134950298 - SVA Other Other -520 866 569 2379 95 0 0 chr4 49338766 49339062 -134949600 + AluSg SINE Alu 1 296 -14 243 235 34 134 chr4 49340427 49340546 -134948116 + MIR SINE MIR 20 126 -82 1792 132 6 15 chr4 49340577 49340964 -134947698 + Charlie3 DNA MER1_type 1 2712 0 471 254 160 57 chr4 49341080 49341292 -134947370 + L2 LINE L2 2939 3199 -114 2583 147 136 9 chr4 49341292 49341747 -134946915 + LTR64 LTR ERVK 1 513 0 471 254 160 57 chr4 49341747 49341865 -134946797 + L2 LINE L2 3199 3303 -10 636 247 88 62 chr4 49341867 49342094 -134946568 + MIR SINE MIR 2 234 -28 303 312 183 43 chr4 49342543 49342844 -134945818 - L1M2 LINE L1 -5711 1138 796 1088 24 16 0 chr4 49343219 49343343 -134945319 + L1PA5 LINE L1 6026 6151 -3 180 0 0 0 chr4 49343568 49343588 -134945074 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2421 248 51 12 chr4 49345595 49345631 -134943031 - L1M4 LINE L1 -3004 3142 3109 2255 109 0 6 chr4 49345631 49345944 -134942718 - AluSx SINE Alu -1 311 1 2421 248 51 12 chr4 49345944 49346787 -134941875 - L1M4 LINE L1 -3037 3109 2194 192 297 55 85 chr4 49347565 49347730 -134940932 - L2 LINE L2 -781 2533 2374 783 171 146 104 chr4 49347816 49348132 -134940530 - L1MB7 LINE L1 0 6184 5856 1968 97 16 58 chr4 49348133 49348442 -134940220 - AluSq SINE Alu -17 296 1 233 269 65 0 chr4 49350176 49350269 -134938393 + MER113 DNA MER1_type? 2 100 -421 245 301 180 8 chr4 49350421 49350634 -134938028 + MIR SINE MIR 3 251 -11 1607 129 118 7 chr4 49351175 49351454 -134937208 - AluYa8 SINE Alu 0 310 1 1538 160 72 24 chr4 49351754 49352047 -134936615 + AluJb SINE Alu 1 307 -5 462 219 0 0 chr4 49352053 49352158 -134936504 + (CA)n Simple_repeat Simple_repeat 2 106 0 458 247 26 52 chr4 49352230 49352384 -134936278 - L2 LINE L2 -1 3312 3163 1182 214 9 5 chr4 49352389 49352604 -134936058 - MER58A DNA MER1_type -8 216 1 694 166 5 139 chr4 49353214 49353437 -134935225 - L1MB3 LINE L1 -7 6176 5984 691 334 123 57 chr4 49353552 49353840 -134934822 - L2 LINE L2 0 3272 3005 2077 101 14 0 chr4 49353840 49354126 -134934536 + AluSp SINE Alu 1 290 -23 691 334 123 57 chr4 49354126 49354314 -134934348 - L2 LINE L2 -267 3005 2831 2206 115 0 10 chr4 49354314 49354619 -134934043 - AluSx SINE Alu -9 303 2 691 334 123 57 chr4 49354619 49355286 -134933376 - L2 LINE L2 -441 2831 2066 198 329 24 12 chr4 49355937 49356019 -134932643 + L2 LINE L2 2977 3059 -213 2092 139 7 3 chr4 49356252 49356555 -134932107 + AluSx SINE Alu 1 304 -8 2213 83 7 13 chr4 49356700 49357000 -134931662 - AluSx SINE Alu -10 302 5 243 211 99 14 chr4 49357007 49357078 -134931584 - L1MEd LINE L1 -5050 1069 993 294 50 0 0 chr4 49357118 49357158 -134931504 + (TG)n Simple_repeat Simple_repeat 2 41 0 1438 180 12 4 chr4 49357163 49357407 -134931255 - AluJo SINE Alu -30 282 37 249 333 107 34 chr4 49357615 49357906 -134930756 - L1MEd LINE L1 -5363 756 445 397 125 70 16 chr4 49357906 49358034 -134930628 + CT-rich Low_complexity Low_complexity 2 136 0 1976 144 20 3 chr4 49358370 49358675 -134929987 - AluJb SINE Alu 0 312 3 228 360 12 37 chr4 49359806 49359970 -134928692 + L2 LINE L2 2150 2309 -1005 330 384 37 32 chr4 49360019 49360209 -134928453 - L2 LINE L2 0 3272 3082 6004 156 21 8 chr4 49360259 49361283 -134927379 - L1MC1 LINE L1 -6 6327 5290 334 185 62 0 chr4 49361308 49361389 -134927273 - L1PA16 LINE L1 -6 6160 6075 5011 130 15 3 chr4 49361394 49362348 -134926314 - L1PA16 LINE L1 -150 6015 5053 240 35 0 0 chr4 49362390 49362419 -134926243 + (TG)n Simple_repeat Simple_repeat 2 30 0 280 268 18 60 chr4 49362426 49362594 -134926068 + HAL1 LINE L1 1404 1564 -943 1812 216 19 12 chr4 49362651 49363062 -134925600 - MLT2D LTR ERVL 0 414 1 208 145 66 13 chr4 49363093 49363169 -134925493 + (TTATA)n Simple_repeat Simple_repeat 1 80 0 189 143 71 18 chr4 49363176 49363344 -134925318 + (TA)n Simple_repeat Simple_repeat 1 177 0 21 0 0 0 chr4 49363344 49363365 -134925297 + AT_rich Low_complexity Low_complexity 1 21 0 207 232 60 12 chr4 49363405 49363573 -134925089 + (TA)n Simple_repeat Simple_repeat 2 177 0 29 0 0 0 chr4 49363573 49363602 -134925060 + AT_rich Low_complexity Low_complexity 1 29 0 184 168 64 0 chr4 49363609 49363734 -134924928 + (TA)n Simple_repeat Simple_repeat 2 134 0 488 205 82 0 chr4 49363769 49363891 -134924771 + HAL1 LINE L1 1650 1781 -726 575 238 8 0 chr4 49364036 49364158 -134924504 + MIR SINE MIR 17 139 -123 932 101 0 32 chr4 49364260 49364418 -134924244 - L1MB7 LINE L1 -290 5894 5742 4105 115 0 2 chr4 49364426 49365042 -134923620 - L1PA13 LINE L1 -3 6160 5546 1366 164 3 44 chr4 49365142 49365435 -134923227 + L1MC3 LINE L1 7504 7784 -1 2250 101 7 0 chr4 49366373 49366670 -134921992 - AluSq SINE Alu -14 299 1 436 243 210 7 chr4 49367165 49367441 -134921221 - L1MEc LINE L1 -3939 2457 2126 272 266 42 120 chr4 49367552 49367669 -134920993 - L1MEc LINE L1 -4642 1754 1629 1712 145 45 17 chr4 49367669 49367958 -134920704 - AluJo SINE Alu -15 297 1 272 266 42 120 chr4 49367958 49368022 -134920640 - L1MEc LINE L1 -4767 1629 1594 1088 242 107 16 chr4 49368022 49368386 -134920276 + MLT2C1 LTR ERVL 1 397 0 272 266 42 120 chr4 49368386 49368444 -134920218 - L1MEc LINE L1 -4802 1594 1533 1074 147 0 12 chr4 49368445 49368615 -134920047 - AluSg/x SINE Alu -8 302 135 250 88 0 0 chr4 49369089 49369123 -134919539 + MSTA LTR MaLR 2 35 -393 1682 109 0 4 chr4 49369125 49369355 -134919307 - AluSq SINE Alu -84 229 1 561 69 0 0 chr4 49369355 49369427 -134919235 + MSTA LTR MaLR 357 428 0 714 284 112 65 chr4 49369517 49369840 -134918822 - MLT1J2 LTR MaLR 0 450 101 705 275 25 10 chr4 49369840 49370040 -134918622 - MER63A DNA MER1_type -4 206 4 714 284 112 65 chr4 49370040 49370146 -134918516 - MLT1J2 LTR MaLR -349 101 1 390 178 0 0 chr4 49370502 49370575 -134918087 - MER116 DNA Mariner -4 76 4 494 50 0 0 chr4 49373452 49373512 -134915150 + Alu SINE Alu 233 292 -19 272 368 60 24 chr4 49374504 49374670 -134913992 - L2 LINE L2 -191 3081 2910 591 181 0 35 chr4 49374777 49374893 -134913769 - FAM SINE Alu -56 129 18 182 184 79 0 chr4 49375322 49375360 -134913302 - MIR SINE MIR -55 153 113 1651 183 3 3 chr4 49377308 49377614 -134911048 + AluSx SINE Alu 4 309 -3 910 173 94 31 chr4 49377617 49377927 -134910735 + L1ME1 LINE L1 5665 5975 -189 2205 236 75 0 chr4 49377960 49378563 -134910099 + L1M4 LINE L1 3545 4192 -1954 209 138 15 46 chr4 49378564 49378629 -134910033 + GA-rich Low_complexity Low_complexity 2 64 0 466 258 139 19 chr4 49378629 49378838 -134909824 + L1M4 LINE L1 4151 4384 -1762 * 10225 28 0 0 chr4 49378835 49380068 -134908594 - L1P LINE L1 -2134 4012 2780 * 11370 15 0 0 chr4 49380064 49382156 -134906506 + L1HS LINE L1 4065 6155 0 313 280 42 35 chr4 49383278 49383421 -134905241 - MIR3 SINE MIR -44 164 21 1643 190 7 7 chr4 49383464 49383759 -134904903 - AluSx SINE Alu -17 295 1 414 0 0 0 chr4 49384284 49384330 -134904332 + (TG)n Simple_repeat Simple_repeat 2 47 0 235 241 17 0 chr4 49385614 49385672 -134902990 - HAL1 LINE L1 -1757 750 692 499 272 76 6 chr4 49385683 49385841 -134902821 - HAL1 LINE L1 -1895 612 444 1551 194 82 15 chr4 49385855 49386195 -134902467 - MLT1A1 LTR MaLR -2 363 1 242 174 0 0 chr4 49386321 49386367 -134902295 - L1ME2 LINE L1 -9 6155 6110 327 266 22 98 chr4 49386493 49386768 -134901894 - L1MEd LINE L1 -5598 521 268 365 232 11 11 chr4 49386844 49386939 -134901723 - L1MEd LINE L1 -6015 104 10 223 276 42 148 chr4 49386941 49387224 -134901438 + L2 LINE L2 2981 3233 -39 603 320 6 0 chr4 49387405 49387580 -134901082 + L2 LINE L2 2886 3061 -252 208 308 62 15 chr4 49387688 49387753 -134900909 + L2 LINE L2 3243 3310 -3 1625 171 36 4 chr4 49388441 49388766 -134899896 + AluJb SINE Alu 1 334 0 376 315 69 8 chr4 49389077 49389207 -134899455 - MER5A DNA MER1_type -40 149 12 208 303 66 0 chr4 49389225 49389301 -134899361 - MIR SINE MIR -13 249 169 463 228 152 5 chr4 49389463 49389622 -134899040 + MER5A DNA MER1_type 4 189 0 187 239 106 28 chr4 49390454 49390596 -134898066 + L2 LINE L2 2811 2963 -309 2145 125 10 0 chr4 49390601 49390896 -134897766 - AluSx SINE Alu -9 303 6 6806 68 9 0 chr4 49390934 49392029 -134896633 - L1PA8 LINE L1 -13 6159 5053 188 333 15 0 chr4 49392037 49392103 -134896559 + L2 LINE L2 3206 3272 0 203 200 0 22 chr4 49392126 49392171 -134896491 + GA-rich Low_complexity Low_complexity 6 49 0 233 235 73 44 chr4 49392341 49392409 -134896253 + L2 LINE L2 3155 3224 -48 203 357 110 55 chr4 49393460 49393841 -134894821 - L2 LINE L2 0 3272 2871 1673 170 72 0 chr4 49393949 49394226 -134894436 + AluJb SINE Alu 1 297 -15 854 18 118 0 chr4 49394492 49394602 -134894060 - AluYa5/8 SINE Alu -188 123 1 189 0 0 0 chr4 49394605 49394626 -134894036 + (T)n Simple_repeat Simple_repeat 1 21 0 852 152 0 0 chr4 49394750 49394875 -134893787 + AluJb SINE Alu 1 125 -187 1978 92 49 32 chr4 49394886 49395170 -134893492 - AluSx SINE Alu -23 289 1 269 289 0 26 chr4 49397075 49397151 -134891511 - L2 LINE L2 -10 3303 3230 932 184 43 30 chr4 49397878 49398111 -134890551 - MER106A DNA MER1_type 0 236 1 184 250 59 29 chr4 49399313 49399381 -134889281 + MER5A DNA MER1_type 116 185 -4 37 39 0 0 chr4 49400192 49400243 -134888419 + AT_rich Low_complexity Low_complexity 1 51 0 1329 170 0 18 chr4 49400658 49400881 -134887781 + AluJo SINE Alu 85 303 -9 1018 130 86 0 chr4 49403320 49403482 -134885180 - AluJb SINE Alu -6 306 131 1003 151 132 59 chr4 49403582 49403801 -134884861 + AluJo SINE Alu 72 306 -6 620 271 19 0 chr4 49403915 49404070 -134884592 - MIR SINE MIR -56 206 49 255 351 97 9 chr4 49406246 49406360 -134882302 - MIR SINE MIR -67 141 18 331 342 17 25 chr4 49407905 49408025 -134880637 - MER5A DNA MER1_type -3 186 68 1753 148 32 0 chr4 49408048 49408341 -134880321 - AluJb SINE Alu 0 324 23 517 307 104 15 chr4 49408498 49408700 -134879962 - MIR SINE MIR -41 221 2 23 0 0 0 chr4 49411198 49411221 -134877441 + AT_rich Low_complexity Low_complexity 1 23 0 1729 122 8 12 chr4 49413415 49413661 -134875001 - AluSx SINE Alu -16 296 52 967 98 0 8 chr4 49413741 49413874 -134874788 - FLAM_C SINE Alu -1 132 1 21 0 0 0 chr4 49413896 49413917 -134874745 + AT_rich Low_complexity Low_complexity 1 21 0 246 250 34 57 chr4 49414320 49414408 -134874254 - MER5A DNA MER1_type -31 158 73 239 257 83 28 chr4 49414858 49415002 -134873660 - L1ME2 LINE L1 -1 6163 6012 794 133 0 16 chr4 49415052 49415180 -134873482 + FLAM_C SINE Alu 1 126 -7 4859 137 172 1 chr4 49415220 49416266 -134872396 + Tigger3b DNA MER2_type 7 1231 0 234 170 75 0 chr4 49416270 49416323 -134872339 - L1ME2 LINE L1 -219 5951 5895 562 220 34 38 chr4 49416388 49416568 -134872094 - L1ME3A LINE L1 -308 5862 5688 300 272 111 72 chr4 49416575 49416755 -134871907 + L1ME LINE L1 24 210 -5860 687 263 21 11 chr4 49417348 49417534 -134871128 - L1MEd LINE L1 -5455 664 477 561 239 62 34 chr4 49417548 49417724 -134870938 + MER63A DNA MER1_type 16 196 -14 331 368 169 13 chr4 49417741 49418266 -134870396 + L2 LINE L2 2252 2892 -422 1791 106 56 81 chr4 49418266 49418586 -134870076 - AluSx SINE Alu 0 312 1 331 368 169 13 chr4 49418586 49418687 -134869975 + L2 LINE L2 2892 2976 -338 25 51 0 0 chr4 49419013 49419052 -134869610 + AT_rich Low_complexity Low_complexity 1 39 0 198 0 0 0 chr4 49421022 49421044 -134867618 + (A)n Simple_repeat Simple_repeat 1 22 0 531 168 0 0 chr4 49422257 49422358 -134866304 - MER53 DNA DNA -88 101 1 1823 133 19 16 chr4 49422823 49423145 -134865517 - MER44D DNA MER2_type 0 605 228 1034 118 7 0 chr4 49423186 49423339 -134865323 + AluSg/x SINE Alu 154 307 -5 287 146 98 98 chr4 49423437 49423519 -134865143 + FAM SINE Alu 84 165 -10 308 245 0 43 chr4 49423609 49423703 -134864959 - L1ME LINE L1 -307 5814 5725 25 31 0 0 chr4 49423774 49423806 -134864856 + AT_rich Low_complexity Low_complexity 1 32 0 390 246 25 26 chr4 49423987 49424163 -134864499 + MLT1K LTR MaLR 16 222 -366 22 0 0 0 chr4 49424182 49424204 -134864458 + AT_rich Low_complexity Low_complexity 1 22 0 262 206 87 32 chr4 49424439 49424565 -134864097 - L1P4 LINE L1 -716 5450 5318 1366 153 69 56 chr4 49424912 49425200 -134863462 - AluJb SINE Alu -20 292 1 1891 171 0 0 chr4 49425509 49425807 -134862855 - AluSx SINE Alu -14 298 1 198 297 0 0 chr4 49426327 49426364 -134862298 - L2 LINE L2 -95 3177 3141 351 274 48 32 chr4 49427053 49427177 -134861485 + MIR SINE MIR 106 231 -31 355 328 62 75 chr4 49427533 49428066 -134860596 - L1M2 LINE L1 -5759 1090 565 * 490 283 86 96 chr4 49427628 49428189 -134860473 + L1M2 LINE L1 543 1097 -5752 224 309 12 0 chr4 49430524 49430608 -134858054 + (TA)n Simple_repeat Simple_repeat 2 86 0 58 0 0 0 chr4 49430742 49430800 -134857862 + AT_rich Low_complexity Low_complexity 1 58 0 23 0 0 0 chr4 49431151 49431174 -134857488 + AT_rich Low_complexity Low_complexity 1 23 0 623 312 92 8 chr4 49431749 49431999 -134856663 + L3 LINE CR1 1001 1271 -306 2396 93 0 6 chr4 49432045 49432356 -134856306 - AluSg1 SINE Alu 0 309 1 340 355 18 12 chr4 49432402 49432571 -134856091 + L3 LINE CR1 1297 1466 -111 388 283 35 21 chr4 49433973 49434118 -134854544 + MER5A DNA MER1_type 43 189 0 287 306 134 39 chr4 49434441 49434830 -134853832 - L2 LINE L2 -349 2965 2540 1731 115 37 19 chr4 49434836 49435106 -134853556 - AluSx SINE Alu 0 312 38 412 255 89 30 chr4 49435215 49435517 -134853145 - MER97c DNA MER1_type? -5 1085 766 1880 204 83 39 chr4 49435829 49436398 -134852264 - MER97a DNA MER1_type? -291 603 10 1350 299 54 11 chr4 49437282 49437726 -134850936 + L2 LINE L2 2850 3312 -1 1099 88 0 0 chr4 49437855 49437991 -134850671 + AluSq/x SINE Alu 1 136 -177 1217 188 76 50 chr4 49438000 49438151 -134850511 - AluJo SINE Alu -28 284 121 333 0 0 0 chr4 49438151 49438188 -134850474 + (TG)n Simple_repeat Simple_repeat 2 38 0 1217 188 76 50 chr4 49438188 49438313 -134850349 - AluJo SINE Alu -191 121 1 237 100 125 0 chr4 49441646 49441686 -134846976 + L2 LINE L2 3265 3309 -4 593 36 12 0 chr4 49442004 49442088 -134846574 + L1P LINE L1 5304 5388 -773 22135 166 40 21 chr4 49442264 49445147 -134843515 - L1PA10 LINE L1 0 6483 3657 2090 132 3 16 chr4 49445147 49445457 -134843205 - AluSx SINE Alu -6 306 1 22135 166 40 21 chr4 49445457 49445520 -134843142 - L1PA10 LINE L1 -2826 3657 3597 189 74 0 0 chr4 49445520 49445547 -134843115 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 22135 166 40 21 chr4 49445547 49448989 -134839673 - L1PA10 LINE L1 -2886 3597 1 1157 222 52 70 chr4 49450120 49450710 -134837952 - L1MC5 LINE L1 -430 7531 6952 1073 204 26 12 chr4 49450823 49451123 -134837539 - L1MC5 LINE L1 -1038 6967 6639 650 335 130 26 chr4 49451511 49452039 -134836623 - HAL1b LINE L1 -794 1713 47 1600 144 19 13 chr4 49452530 49452842 -134835820 - L1MB7 LINE L1 -43 6141 5828 1704 158 36 23 chr4 49452871 49453175 -134835487 + AluJb SINE Alu 1 308 -4 238 232 377 0 chr4 49453176 49453245 -134835417 + Tigger3(Golem) DNA MER2_type 18 112 -2917 * 3206 102 91 37 chr4 49453243 49453862 -134834800 + Tigger3(Golem) DNA MER2_type 2241 2892 -137 1716 110 26 0 chr4 49453872 49454145 -134834517 - L1MA1 LINE L1 -6 6296 6017 766 191 14 0 chr4 49454151 49454298 -134834364 + Tigger3(Golem) DNA MER2_type 2880 3028 -1 2462 150 49 35 chr4 49454298 49454421 -134834241 - L1MB7 LINE L1 -355 5829 5709 2221 108 0 0 chr4 49454421 49454707 -134833955 + AluSx SINE Alu 1 286 -26 2462 150 49 35 chr4 49454707 49455332 -134833330 - L1MB7 LINE L1 -475 5709 5071 217 216 0 0 chr4 49455775 49455812 -134832850 + polypyrimidine Low_complexity Low_complexity 1 37 0 198 71 0 0 chr4 49455915 49455943 -134832719 + (TG)n Simple_repeat Simple_repeat 2 29 0 765 142 14 14 chr4 49456191 49456339 -134832323 - L1MB7 LINE L1 -1090 5056 4909 1050 214 146 30 chr4 49456895 49457354 -134831308 + L1MDb LINE L1 894 1405 -5004 242 248 37 9 chr4 49457414 49457523 -134831139 - L1M LINE L1 -803 5371 5260 843 227 233 89 chr4 49457720 49458723 -134829939 + L2 LINE L2 2124 3308 -5 687 143 24 32 chr4 49458789 49458915 -134829747 + FLAM_C SINE Alu 1 125 -18 371 287 92 44 chr4 49458928 49459200 -134829462 + L1MC4a LINE L1 5606 5890 -1918 946 81 56 44 chr4 49459386 49459546 -134829116 - FRAM SINE Alu 0 166 5 746 196 63 0 chr4 49460143 49460286 -134828376 - FRAM SINE Alu -14 152 1 2566 143 50 79 chr4 49460323 49460727 -134827935 - L1PA16 LINE L1 -9 6157 5721 50 0 0 0 chr4 49460727 49460777 -134827885 + AT_rich Low_complexity Low_complexity 1 50 0 2566 143 50 79 chr4 49460777 49460881 -134827781 - L1PA16 LINE L1 -445 5721 5616 2326 138 27 3 chr4 49460882 49461455 -134827207 + L1PA16 LINE L1 5024 5613 -543 194 295 16 0 chr4 49462188 49462249 -134826413 - L2 LINE L2 0 3313 3252 26 50 0 0 chr4 49462660 49462700 -134825962 + AT_rich Low_complexity Low_complexity 1 40 0 464 274 144 14 chr4 49462985 49463193 -134825469 - MIR SINE MIR 0 262 28 12240 142 119 64 chr4 49463259 49463642 -134825020 - L1 LINE L1 -3333 4232 3871 423 0 0 0 chr4 49463642 49463689 -134824973 + (TA)n Simple_repeat Simple_repeat 1 47 0 12240 142 119 64 chr4 49463689 49464341 -134824321 - L1 LINE L1 -3694 3871 3256 2343 107 0 0 chr4 49464341 49464639 -134824023 - AluSx SINE Alu -14 298 1 12240 142 119 64 chr4 49464639 49467299 -134821363 - L1 LINE L1 -4309 3256 30 2351 104 35 35 chr4 49467559 49467934 -134820728 + THE1C LTR MaLR 1 375 0 395 306 71 41 chr4 49468080 49468276 -134820386 + MIR SINE MIR 1 202 -60 528 284 103 49 chr4 49468433 49468803 -134819859 - MLT1J LTR MaLR -118 393 4 21 0 0 0 chr4 49468875 49468896 -134819766 + AT_rich Low_complexity Low_complexity 1 21 0 36 0 0 0 chr4 49469592 49469628 -134819034 + AT_rich Low_complexity Low_complexity 1 36 0 11480 23 1 0 chr4 49469628 49471655 -134817007 - L1PA4 LINE L1 -7 6148 4121 5932 29 0 0 chr4 49471657 49472343 -134816319 + L1PA4 LINE L1 3430 4115 -2031 186 67 67 22 chr4 49472455 49472500 -134816162 + T-rich Low_complexity Low_complexity 1 47 0 1940 65 62 45 chr4 49472503 49472728 -134815934 - L1MA2 LINE L1 0 6304 6071 2173 114 10 0 chr4 49472728 49473026 -134815636 - AluSx SINE Alu -11 301 1 1940 65 62 45 chr4 49473026 49473108 -134815554 - L1MA2 LINE L1 -233 6071 5992 205 374 104 9 chr4 49473305 49473420 -134815242 + L2 LINE L2 3141 3266 -6 2045 133 13 3 chr4 49473620 49473929 -134814733 - L1MB7 LINE L1 -3 6181 5870 825 238 264 45 chr4 49474206 49475071 -134813591 + L2 LINE L2 2124 3215 -98 270 273 64 36 chr4 49475105 49475215 -134813447 + L2 LINE L2 3196 3308 -5 3747 136 108 0 chr4 49475378 49476009 -134812653 + L1M1 LINE L1 70 768 -6797 1309 259 17 6 chr4 49476015 49476370 -134812292 + L1M1 LINE L1 823 1181 -6384 2841 168 37 27 chr4 49476691 49477219 -134811443 + L1MC2 LINE L1 5380 5916 -428 1849 216 106 30 chr4 49477219 49477728 -134810934 + MER44D DNA MER2_type 2 604 -1 2841 168 37 27 chr4 49477728 49477796 -134810866 + L1MC2 LINE L1 5916 5982 -362 831 170 54 28 chr4 49478054 49478247 -134810415 + MLT1B LTR MaLR 1 183 -191 495 136 0 0 chr4 49478248 49478314 -134810348 + AluSc SINE Alu 46 111 -198 413 125 0 0 chr4 49478314 49478378 -134810284 - MER9 LTR ERVK 0 511 448 243 61 0 0 chr4 49478380 49478413 -134810249 + (TCTCCC)n Simple_repeat Simple_repeat 1 33 0 5434 163 4 19 chr4 49479085 49480183 -134808479 + L1P4 LINE L1 4380 5457 -711 1550 174 80 12 chr4 49480327 49480664 -134807998 + L1MD1 LINE L1 5879 6236 -6 881 244 122 9 chr4 49480691 49480920 -134807742 - MIR SINE MIR -1 261 7 405 191 16 186 chr4 49480972 49481166 -134807496 + MER102b DNA MER1_type 181 341 0 31 26 0 0 chr4 49481226 49481264 -134807398 + AT_rich Low_complexity Low_complexity 1 38 0 256 195 0 26 chr4 49481319 49481396 -134807266 + AluS SINE Alu 2 76 -225 908 266 70 3 chr4 49481922 49482298 -134806364 + L2 LINE L2 2681 3079 -234 2095 114 7 3 chr4 49482298 49482596 -134806066 + AluSx SINE Alu 1 299 -13 1561 205 0 0 chr4 49482606 49482884 -134805778 + AluJb SINE Alu 1 278 -34 193 289 35 53 chr4 49483256 49483370 -134805292 - MIR SINE MIR -120 142 31 267 293 24 0 chr4 49483665 49483747 -134804915 + L2 LINE L2 2920 3003 -310 343 270 10 20 chr4 49483766 49483866 -134804796 - L2 LINE L2 -37 3276 3178 2243 203 45 12 chr4 49483906 49484395 -134804267 + MLT1D LTR MaLR 1 505 0 5114 33 0 0 chr4 49484540 49485138 -134803524 + L1P LINE L1 3415 4012 -2134 414 280 24 30 chr4 49485135 49485303 -134803359 - L1M4 LINE L1 -1762 4384 4218 * 894 184 52 61 chr4 49487333 49487545 -134801117 - MLT1B LTR MaLR 0 390 181 1537 110 0 0 chr4 49487561 49487761 -134800901 - AluSc SINE Alu -5 304 105 3667 72 0 4 chr4 49487761 49488220 -134800442 + MER9 LTR ERVK 2 458 -53 5558 46 0 0 chr4 49488220 49488852 -134799810 - SVA Other Other 0 1386 755 425 148 40 119 chr4 49590456 49590557 -134698105 + LTR9 LTR ERV1 171 263 -349 22 0 0 0 chr4 49590925 49590947 -134697715 + AT_rich Low_complexity Low_complexity 1 22 0 1928 133 0 7 chr4 49592008 49592321 -134696341 - AluSq SINE Alu 0 312 2 183 397 0 15 chr4 49593014 49593082 -134695580 + L3 LINE CR1 1413 1479 -98 379 288 138 68 chr4 49594181 49594636 -134694026 + L2 LINE L2 2826 3312 -1 2348 76 0 3 chr4 49594710 49595014 -134693648 + AluY SINE Alu 1 303 -8 22 35 0 0 chr4 49595093 49595122 -134693540 + AT_rich Low_complexity Low_complexity 1 29 0 375 41 0 0 chr4 49595563 49595612 -134693050 + (TCTCCC)n Simple_repeat Simple_repeat 3 51 0 5567 89 18 24 chr4 49595612 49597318 -134691344 + SVA Other Other 53 1380 -6 1977 136 0 0 chr4 49598160 49598473 -134690189 + AluSx SINE Alu 4 312 0 2211 91 3 0 chr4 49599491 49599788 -134688874 + AluY SINE Alu 1 298 -13 434 231 0 0 chr4 49600750 49600828 -134687834 - MER20 DNA MER1_type -58 161 84 188 212 0 0 chr4 49600950 49600983 -134687679 - MIR SINE MIR -71 191 159 2808 170 62 10 chr4 49601620 49602121 -134686541 - MER1A DNA MER1_type 0 527 1 183 100 0 0 chr4 49602138 49602168 -134686494 + (TGAG)n Simple_repeat Simple_repeat 1 30 0 1393 171 4 4 chr4 49602168 49602407 -134686255 - AluSx SINE Alu -66 246 8 205 282 13 77 chr4 49602435 49602513 -134686149 + L2 LINE L2 3197 3269 -3 250 105 0 26 chr4 49602623 49602661 -134686001 + Charlie3 DNA MER1_type 2468 2504 -206 306 73 0 0 chr4 49603763 49603804 -134684858 + (A)n Simple_repeat Simple_repeat 1 41 0 993 206 89 12 chr4 49604861 49605109 -134683553 + AluJb SINE Alu 30 296 -16 211 208 42 10 chr4 49605287 49605383 -134683279 + GA-rich Low_complexity Low_complexity 4 102 0 551 130 39 33 chr4 49605465 49605893 -134682769 + GA-rich Low_complexity Low_complexity 1 430 0 405 180 29 35 chr4 49605921 49606093 -134682569 + GA-rich Low_complexity Low_complexity 2 172 0 679 244 25 34 chr4 49606239 49607773 -134680889 + BSR/Beta Satellite Satellite 1 1520 -29 1778 228 13 37 chr4 49607847 49608043 -134680619 + BSR/Beta Satellite Satellite 1 200 -2822 1777 153 85 26 chr4 49608043 49608395 -134680267 + THE1C LTR MaLR 3 375 0 1778 228 13 37 chr4 49608395 49610897 -134677765 + BSR/Beta Satellite Satellite 200 2974 -48 1253 243 18 42 chr4 49610995 49612740 -134675922 + BSR/Beta Satellite Satellite 1 1703 0 694 251 8 42 chr4 49612753 49614477 -134674185 + BSR/Beta Satellite Satellite 1 1665 -48 313 379 12 4 chr4 49614619 49614800 -134673862 + BSR/Beta Satellite Satellite 1 182 -1 510 241 6 43 chr4 49614851 49615402 -134673260 + BSR/Beta Satellite Satellite 1 530 -34 1638 267 34 15 chr4 49615474 49618351 -134670311 + BSR/Beta Satellite Satellite 1 2933 -42 198 167 0 0 chr4 49618354 49618390 -134670272 + T-rich Low_complexity Low_complexity 1 36 0 601 255 44 18 chr4 49618390 49618760 -134669902 + BSR/Beta Satellite Satellite 1 379 -32 724 234 21 41 chr4 49618792 49620442 -134668220 + BSR/Beta Satellite Satellite 1 1908 -439 2098 151 0 0 chr4 49620442 49620754 -134667908 + AluSx SINE Alu 1 312 0 724 234 21 41 chr4 49620754 49621174 -134667488 + BSR/Beta Satellite Satellite 1908 2335 -12 433 245 62 9 chr4 49621198 49621344 -134667318 + BSR/Beta Satellite Satellite 1 153 -19 204 266 13 25 chr4 49622259 49622338 -134666324 + (CATATA)n Simple_repeat Simple_repeat 2 79 0 1940 144 47 0 chr4 49622705 49623004 -134665658 - AluSq SINE Alu 0 313 1 624 220 0 23 chr4 49623233 49623365 -134665297 - LTR18B LTR ERVL 0 614 486 291 243 0 14 chr4 49623355 49623429 -134665233 - LTR18B LTR ERVL -420 194 122 * 447 220 84 104 chr4 49623466 49623682 -134664980 - LTR18B LTR ERVL -165 192 1 203 319 8 0 chr4 49625123 49625242 -134663420 + (TA)n Simple_repeat Simple_repeat 1 120 0 1921 127 46 7 chr4 49625249 49625532 -134663130 + AluSg SINE Alu 2 295 -15 234 0 0 0 chr4 49626318 49626344 -134662318 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1082 235 5 10 chr4 49626493 49626911 -134661751 - BSR/Beta Satellite Satellite -1 415 1 332 250 0 57 chr4 49627017 49627105 -134661557 + AluJb SINE Alu 160 242 -60 22 0 0 0 chr4 49627806 49627828 -134660834 + AT_rich Low_complexity Low_complexity 1 22 0 334 220 0 55 chr4 49628145 49628236 -134660426 + FRAM SINE Alu 21 106 -60 246 160 0 0 chr4 49628611 49628661 -134660001 + CT-rich Low_complexity Low_complexity 2 51 0 300 272 0 65 chr4 49628839 49628931 -134659731 + AluJb SINE Alu 160 245 -57 241 303 0 56 chr4 49629389 49629478 -134659184 + FRAM SINE Alu 23 106 -60 239 222 0 79 chr4 49629708 49629771 -134658891 + AluJb SINE Alu 180 237 -65 1030 132 96 0 chr4 49680346 49680513 -134608149 + AluSp SINE Alu 131 313 0 922 220 157 0 chr4 49680783 49681038 -134607624 - L2 LINE L2 -1091 2223 1929 2844 144 44 2 chr4 49681138 49681589 -134607073 - L1MC1 LINE L1 -18 6315 5846 198 0 0 0 chr4 49681602 49681624 -134607038 + (TTA)n Simple_repeat Simple_repeat 2 23 0 2167 116 3 0 chr4 49681760 49682054 -134606608 + AluSx SINE Alu 13 307 -5 707 168 15 23 chr4 49682197 49682322 -134606340 - AluJb SINE Alu -15 297 173 1600 194 7 30 chr4 49682322 49682626 -134606036 - AluJo SINE Alu -15 297 1 1332 86 6 0 chr4 49683202 49683376 -134605286 + AluSg/x SINE Alu 130 304 -8 2139 102 14 0 chr4 49683564 49683857 -134604805 + AluSp SINE Alu 1 297 -16 734 186 0 9 chr4 49684023 49684136 -134604526 + FLAM_A SINE Alu 5 116 -17 196 378 52 30 chr4 49684491 49684626 -134604036 + L2 LINE L2 2726 2863 -451 874 168 0 0 chr4 49684767 49684898 -134603764 - AluSq/x SINE Alu -179 133 3 340 304 122 14 chr4 49685197 49685345 -134603317 - MIR3 SINE MIR -29 179 16 1759 149 102 3 chr4 49685375 49685697 -134602965 + MLT2D LTR ERVL 1 354 -60 259 146 0 0 chr4 49685774 49685815 -134602847 + MLT2D LTR ERVL 367 407 -7 1082 151 11 6 chr4 49685929 49686108 -134602554 + L1MB7 LINE L1 5997 6176 -8 221 244 0 0 chr4 49686116 49686157 -134602505 + polypurine Low_complexity Low_complexity 2 42 0 3183 140 58 54 chr4 49686669 49686724 -134601938 - L1MC1 LINE L1 -436 5897 5844 1613 171 25 14 chr4 49686724 49686900 -134601762 - AluJb SINE Alu 0 316 134 1931 144 10 0 chr4 49686900 49687192 -134601470 - AluY SINE Alu -16 295 1 1613 171 25 14 chr4 49687192 49687328 -134601334 - AluJb SINE Alu -182 134 1 3183 140 58 54 chr4 49687328 49687859 -134600803 - L1MC1 LINE L1 -489 5844 5306 2416 102 0 0 chr4 49687859 49688164 -134600498 + AluSx SINE Alu 1 305 -7 3183 140 58 54 chr4 49688164 49688331 -134600331 - L1MC1 LINE L1 -1027 5306 5141 1834 179 64 14 chr4 49688333 49688690 -134599972 - MSTC LTR MaLR 0 428 54 5546 34 2 2 chr4 49689156 49689776 -134598886 + L1PA5 LINE L1 5535 6154 0 2249 73 73 0 chr4 49690295 49690584 -134598078 + AluY SINE Alu 1 310 -1 680 243 190 27 chr4 49690591 49691044 -134597618 + MLT1G1 LTR MaLR 13 586 -9 22 35 0 0 chr4 49691454 49691483 -134597179 + AT_rich Low_complexity Low_complexity 1 29 0 2099 134 0 0 chr4 49691974 49692266 -134596396 + AluSx SINE Alu 1 292 -20 21 0 0 0 chr4 49692269 49692290 -134596372 + AT_rich Low_complexity Low_complexity 1 21 0 375 313 75 54 chr4 49692296 49692536 -134596126 + MLT1J LTR MaLR 17 261 -250 994 287 103 33 chr4 49692667 49693265 -134595397 - L2 LINE L2 -27 3286 2634 1705 208 0 10 chr4 49693861 49694174 -134594488 + AluJo SINE Alu 1 310 -2 2033 164 0 0 chr4 49694189 49694501 -134594161 + AluJb SINE Alu 1 312 0 925 259 113 0 chr4 49694533 49694799 -134593863 - L2 LINE L2 -691 2623 2328 417 290 310 3 chr4 49694807 49695104 -134593558 - MLT1L LTR MaLR -204 411 24 206 286 45 68 chr4 49695116 49695249 -134593413 - L2 LINE L2 -2585 729 600 296 284 296 10 chr4 49695262 49695678 -134592984 + HAL1 LINE L1 1368 1902 -605 456 256 142 51 chr4 49695782 49696036 -134592626 + MLT1L LTR MaLR 1 277 -338 8214 55 2 8 chr4 49696149 49697174 -134591488 - L1P LINE L1 -5127 1019 1 1603 148 67 10 chr4 49697161 49697459 -134591203 - L1MB7 LINE L1 -296 5888 5574 * 230 336 105 21 chr4 49698439 49698582 -134590080 + MIR3 SINE MIR 17 171 -37 2555 55 7 0 chr4 49699029 49699338 -134589324 + AluY SINE Alu 1 311 0 1556 193 0 4 chr4 49699355 49699619 -134589043 + AluJo SINE Alu 1 263 -49 398 279 14 36 chr4 49699620 49699760 -134588902 - L1MC/D LINE L1 -2067 5741 5605 1128 152 47 108 chr4 49699771 49699938 -134588724 - AluSx SINE Alu -15 297 154 246 32 0 0 chr4 49699938 49699969 -134588693 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1128 152 47 108 chr4 49699969 49700097 -134588565 - AluSx SINE Alu -158 154 20 2263 109 0 0 chr4 49700128 49700431 -134588231 + AluY SINE Alu 1 303 -8 661 221 94 21 chr4 49700683 49700918 -134587744 - L1MC5 LINE L1 -29 7932 7681 463 233 0 0 chr4 49700914 49701000 -134587662 - L1ME LINE L1 -449 5713 5628 * 21 0 0 0 chr4 49701040 49701061 -134587601 + AT_rich Low_complexity Low_complexity 1 21 0 1242 227 73 102 chr4 49701130 49701580 -134587082 - MLT1F1 LTR MaLR 0 567 106 2775 147 45 25 chr4 49701580 49702089 -134586573 - L1MB3 LINE L1 -8 6175 5657 1242 227 73 102 chr4 49702089 49702113 -134586549 - MLT1F1 LTR MaLR -461 106 83 2109 125 14 0 chr4 49702113 49702401 -134586261 + AluSx SINE Alu 1 292 -20 1242 227 73 102 chr4 49702401 49702457 -134586205 - MLT1F1 LTR MaLR -484 83 26 1382 219 69 147 chr4 49702723 49703113 -134585549 - L1MC4a LINE L1 -1879 5929 5621 1855 134 17 17 chr4 49703113 49703274 -134585388 - AluSx SINE Alu -14 298 135 2470 79 0 0 chr4 49703274 49703579 -134585083 - AluSq SINE Alu -8 305 1 1855 134 17 17 chr4 49703579 49703715 -134584947 - AluSx SINE Alu -176 136 1 1382 219 69 147 chr4 49703715 49704053 -134584609 - L1MC4a LINE L1 -2187 5621 5258 549 384 67 34 chr4 49704366 49704783 -134583879 - L2 LINE L2 -2 3270 2840 358 256 53 30 chr4 49704780 49704913 -134583749 - L2 LINE L2 -591 2723 2588 * 222 338 86 46 chr4 49704959 49705110 -134583552 + L2 LINE L2 2596 2752 -562 24 53 0 0 chr4 49706093 49706131 -134582531 + AT_rich Low_complexity Low_complexity 1 38 0 2039 134 10 0 chr4 49706137 49706429 -134582233 - AluSx SINE Alu -17 295 1 1523 188 41 4 chr4 49706622 49706921 -134581741 + AluJb SINE Alu 1 309 0 21 0 0 0 chr4 49707317 49707338 -134581324 + AT_rich Low_complexity Low_complexity 1 21 0 7183 83 4 0 chr4 49707439 49708531 -134580131 + L1PA8 LINE L1 5068 6163 -9 459 0 0 0 chr4 49708678 49708729 -134579933 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 1667 126 122 0 chr4 49709329 49709591 -134579071 - AluSx SINE Alu -18 294 1 257 250 112 9 chr4 49710804 49710920 -134577742 - MIR SINE MIR -15 247 120 185 263 53 35 chr4 49711861 49711918 -134576744 - L2 LINE L2 -29 3243 3186 2072 116 7 16 chr4 49712353 49712663 -134575999 + AluJo SINE Alu 1 307 -5 2451 96 0 0 chr4 49714006 49714318 -134574344 + AluSx SINE Alu 1 312 0 2168 68 54 3 chr4 49714327 49714622 -134574040 + AluY SINE Alu 2 311 0 737 186 161 40 chr4 49716307 49716435 -134572227 + MER58A DNA MER1_type 1 163 -2257 1212 191 15 0 chr4 49716435 49716697 -134571965 - L1MA4 LINE L1 -7 6293 6028 737 186 161 40 chr4 49716697 49716767 -134571895 + MER58A DNA MER1_type 163 223 -1 37 39 0 0 chr4 49717746 49717797 -134570865 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr4 49718106 49718128 -134570534 + AT_rich Low_complexity Low_complexity 1 22 0 2469 74 0 3 chr4 49718275 49718587 -134570075 - AluSq SINE Alu -2 311 1 1894 162 103 3 chr4 49718637 49719018 -134569644 + Tigger6 DNA MER2_type 2 421 -1176 2336 181 9 17 chr4 49719018 49719439 -134569223 - MER54A LTR ERVL 0 901 484 695 167 62 14 chr4 49719624 49719768 -134568894 + Tigger6 DNA MER2_type 1016 1166 -431 22 0 0 0 chr4 49720119 49720141 -134568521 + AT_rich Low_complexity Low_complexity 1 22 0 1940 160 3 3 chr4 49720943 49721255 -134567407 + AluSx SINE Alu 1 312 0 633 307 123 43 chr4 49722297 49722858 -134565804 + L2 LINE L2 1821 2426 -888 999 274 138 24 chr4 49722906 49722988 -134565674 + Charlie7 DNA MER1_type 1 72 -2540 297 0 0 0 chr4 49722988 49723021 -134565641 + (TA)n Simple_repeat Simple_repeat 1 33 0 999 274 138 24 chr4 49723021 49723357 -134565305 + Charlie7 DNA MER1_type 72 467 -2145 244 252 18 54 chr4 49723429 49723540 -134565122 + Charlie7 DNA MER1_type 1773 1879 -733 290 305 37 0 chr4 49723557 49723639 -134565023 - Charlie7 DNA MER1_type -2511 101 17 359 286 39 7 chr4 49723640 49723794 -134564868 + Charlie7 DNA MER1_type 1874 2032 -580 368 188 58 0 chr4 49724052 49724121 -134564541 + L2 LINE L2 3239 3311 -2 2137 80 3 61 chr4 49724243 49724569 -134564093 - AluSp SINE Alu -6 307 1 315 84 0 2 chr4 49724598 49724665 -134563997 + AluSp/q SINE Alu 243 304 0 459 227 21 21 chr4 49724693 49724790 -134563872 - MIR SINE MIR -148 114 18 23 33 0 0 chr4 49724804 49724834 -134563828 + AT_rich Low_complexity Low_complexity 1 30 0 242 389 44 53 chr4 49724951 49725064 -134563598 - L2 LINE L2 -32 3240 3129 494 251 74 59 chr4 49725181 49725384 -134563278 + HAL1 LINE L1 1786 1991 -516 238 304 45 9 chr4 49726100 49726212 -134562450 + LTR67 LTR ERVL 439 554 -3 29 47 0 0 chr4 49727118 49727161 -134561501 + AT_rich Low_complexity Low_complexity 1 43 0 614 242 181 14 chr4 49727383 49727598 -134561064 + MIR SINE MIR 11 261 -1 23 0 0 0 chr4 49727620 49727643 -134561019 + AT_rich Low_complexity Low_complexity 1 23 0 2073 145 0 28 chr4 49728141 49728499 -134560163 + L1MC1 LINE L1 5977 6324 -9 24 77 0 0 chr4 49728551 49728603 -134560059 + AT_rich Low_complexity Low_complexity 1 52 0 374 176 324 20 chr4 49729022 49729124 -134559538 + FLAM_A SINE Alu 1 133 0 1270 60 6 0 chr4 49729190 49729356 -134559306 + L1MA1 LINE L1 6136 6302 0 2053 123 3 0 chr4 49730731 49731023 -134557639 + AluSx SINE Alu 1 293 -19 24 0 0 0 chr4 49731715 49731739 -134556923 + AT_rich Low_complexity Low_complexity 1 24 0 216 314 49 20 chr4 49731998 49732100 -134556562 + MIR SINE MIR 42 146 -62 405 323 32 45 chr4 49733400 49733620 -134555042 + MIR SINE MIR 14 230 -32 1713 121 103 0 chr4 49733794 49734066 -134554596 + MER7A DNA MER2_type 48 345 -1 955 318 38 38 chr4 49734745 49735242 -134553420 + L2 LINE L2 2816 3312 -1 227 196 0 20 chr4 49735283 49735334 -134553328 - L2 LINE L2 -295 2977 2928 2227 168 49 9 chr4 49735334 49735781 -134552881 + MLT1C LTR MaLR 1 465 -2 452 264 120 6 chr4 49736487 49736654 -134552008 + L1MEc LINE L1 40 225 -6171 2103 93 0 48 chr4 49736980 49737293 -134551369 + AluSx SINE Alu 1 298 -14 27 73 0 0 chr4 49739182 49739237 -134549425 + AT_rich Low_complexity Low_complexity 1 55 0 1943 145 7 7 chr4 49740342 49740639 -134548023 + AluJb SINE Alu 1 297 -15 317 272 70 0 chr4 49741566 49741680 -134546982 + L1MC3 LINE L1 6526 6647 -1138 551 133 54 6 chr4 49741684 49741850 -134546812 + (TA)n Simple_repeat Simple_repeat 1 174 0 345 323 98 0 chr4 49741878 49742042 -134546620 - L1MC/D LINE L1 -2019 5789 5610 1326 120 10 24 chr4 49742078 49742287 -134546375 + MER2 DNA MER2_type 1 206 -139 23 68 0 0 chr4 49742290 49742334 -134546328 + AT_rich Low_complexity Low_complexity 1 44 0 283 106 0 0 chr4 49742341 49742388 -134546274 - L1MA3 LINE L1 0 6305 6259 844 282 29 11 chr4 49742457 49742730 -134545932 - L1MC/D LINE L1 -1306 4840 4563 310 276 90 21 chr4 49742805 49742950 -134545712 + L1ME LINE L1 5386 5540 -622 438 152 10 135 chr4 49742970 49743081 -134545581 + MER34 LTR ERV1 1 97 -448 395 197 25 92 chr4 49743072 49743244 -134545418 + MER34B LTR ERV1 242 385 -157 * 277 233 11 44 chr4 49743326 49743416 -134545246 + MER34 LTR ERV1 456 542 0 1313 192 110 47 chr4 49743416 49743492 -134545170 + MER44D DNA MER2_type 1 71 -2420 333 68 0 0 chr4 49743492 49743536 -134545126 + (TG)n Simple_repeat Simple_repeat 1 44 0 1313 192 110 47 chr4 49743536 49743585 -134545077 + MER44D DNA MER2_type 71 115 -2376 2198 77 6 48 chr4 49743585 49743898 -134544764 - AluY SINE Alu -11 300 1 1313 192 110 47 chr4 49743898 49744002 -134544660 + MER44D DNA MER2_type 115 211 -2280 2221 116 52 3 chr4 49744002 49744346 -134544316 - MER46B DNA MER2_type 0 236 1 1313 192 110 47 chr4 49744346 49744432 -134544230 + MER44D DNA MER2_type 211 608 -1 210 184 26 0 chr4 49744581 49744619 -134544043 - MIR SINE MIR -58 150 112 2163 118 3 0 chr4 49744683 49744980 -134543682 + AluSx SINE Alu 1 298 -14 2203 126 0 0 chr4 49745449 49745759 -134542903 + AluSx SINE Alu 1 310 -2 2535 52 3 3 chr4 49745949 49746259 -134542403 - AluY SINE Alu -1 310 1 3428 60 0 9 chr4 49746913 49747364 -134541298 + L1PA7 LINE L1 5708 6154 0 277 250 288 6 chr4 49747522 49747682 -134540980 - MIR SINE MIR 0 262 58 1163 151 0 53 chr4 49748481 49748687 -134539975 - AluJo SINE Alu -14 298 104 217 284 15 0 chr4 49748770 49748837 -134539825 + GA-rich Low_complexity Low_complexity 3 70 0 21 0 0 0 chr4 49749717 49749738 -134538924 + AT_rich Low_complexity Low_complexity 1 21 0 263 182 73 0 chr4 49749872 49749927 -134538735 + L2 LINE L2 3254 3312 -1 1582 173 54 7 chr4 49750633 49750928 -134537734 - AluJo SINE Alu -1 311 3 348 312 19 32 chr4 49753499 49753653 -134535009 - MER5B DNA MER1_type 0 178 27 289 334 21 7 chr4 49754696 49754839 -134533823 + MIR SINE MIR 6 152 -56 2061 205 3 85 chr4 49755792 49756358 -134532304 + MLT2B1 LTR ERVL 1 520 0 267 301 118 27 chr4 49756381 49756540 -134532122 + L1ME LINE L1 5614 5794 -327 1982 161 27 0 chr4 49756540 49756875 -134531787 - MER2 DNA MER2_type 0 344 1 267 301 118 27 chr4 49756875 49756901 -134531761 + L1ME LINE L1 5794 5816 -305 366 245 101 14 chr4 49757193 49757332 -134531330 + HAL1b LINE L1 691 841 -507 198 209 0 0 chr4 49757381 49757424 -134531238 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 311 217 142 8 chr4 49757428 49757548 -134531114 + HAL1b LINE L1 961 1096 -252 21 0 0 0 chr4 49758751 49758772 -134529890 + AT_rich Low_complexity Low_complexity 1 21 0 1914 121 4 0 chr4 49758938 49759203 -134529459 - AluSx SINE Alu -46 266 1 298 248 121 27 chr4 49759389 49759538 -134529124 + L1MC4a LINE L1 5741 5903 -1905 294 29 0 0 chr4 49759561 49759596 -134529066 + (TG)n Simple_repeat Simple_repeat 2 36 0 1870 112 35 29 chr4 49759598 49759945 -134528717 + L1MA5A LINE L1 5940 6288 -9 213 183 61 24 chr4 49760137 49760219 -134528443 + (TTATA)n Simple_repeat Simple_repeat 1 85 0 287 255 239 21 chr4 49760391 49760579 -134528083 + HAL1 LINE L1 10 238 -2269 411 267 30 30 chr4 49760602 49760733 -134527929 - L2 LINE L2 0 3313 3183 994 286 161 30 chr4 49760836 49761395 -134527267 + HAL1 LINE L1 197 828 -1679 198 0 0 0 chr4 49762574 49762596 -134526066 + (TTA)n Simple_repeat Simple_repeat 1 22 0 239 293 158 30 chr4 49762658 49762791 -134525871 - L2 LINE L2 -8 3264 3115 1780 147 47 10 chr4 49762917 49763216 -134525446 + AluJb SINE Alu 1 310 -2 239 0 32 0 chr4 49763216 49763247 -134525415 + (TA)n Simple_repeat Simple_repeat 2 33 0 27 0 0 0 chr4 49763263 49763290 -134525372 + AT_rich Low_complexity Low_complexity 1 27 0 287 228 11 33 chr4 49763367 49763459 -134525203 + L1MC5 LINE L1 7828 7917 -44 2253 114 0 7 chr4 49763826 49764132 -134524530 - AluSx SINE Alu -8 304 1 2239 93 0 0 chr4 49764310 49764599 -134524063 + AluY SINE Alu 9 297 -14 224 310 76 35 chr4 49765852 49765997 -134522665 - MIR3 SINE MIR -56 152 2 1967 35 47 16 chr4 49766454 49766708 -134521954 + AluY SINE Alu 39 300 -11 21 36 0 0 chr4 49767711 49767739 -134520923 + AT_rich Low_complexity Low_complexity 1 28 0 906 127 29 63 chr4 49767739 49767944 -134520718 - L1MA6 LINE L1 -1 6299 6102 21 36 0 0 chr4 49768986 49769014 -134519648 + AT_rich Low_complexity Low_complexity 1 28 0 195 139 0 0 chr4 49769759 49769795 -134518867 + (TA)n Simple_repeat Simple_repeat 2 37 0 888 209 0 17 chr4 49769846 49770023 -134518639 - FRAM SINE Alu -1 175 2 646 251 83 5 chr4 49773163 49773517 -134515145 - L1ME LINE L1 -709 5455 5078 1073 251 91 76 chr4 49773528 49774057 -134514605 + MLT1H LTR MaLR 4 540 -9 1038 190 51 11 chr4 49774057 49774331 -134514331 + L1M4 LINE L1 4381 4665 -1481 527 303 56 0 chr4 49774360 49774502 -134514160 + MER58A DNA MER1_type 1 150 0 23 0 0 0 chr4 49775358 49775381 -134513281 + AT_rich Low_complexity Low_complexity 1 23 0 327 170 0 9 chr4 49775555 49775624 -134513038 + Alu SINE Alu 1 47 -253 443 259 93 32 chr4 49777085 49777301 -134511361 + L2 LINE L2 3054 3282 -31 395 314 144 11 chr4 49777493 49777945 -134510717 + L1ME4a LINE L1 5550 6061 -60 1900 151 0 13 chr4 49778133 49778438 -134510224 + AluJb SINE Alu 1 301 -11 24 53 0 0 chr4 49779889 49779927 -134508735 + AT_rich Low_complexity Low_complexity 1 38 0 516 101 0 0 chr4 49780212 49780281 -134508381 + U5 snRNA snRNA 1 69 -47 638 194 8 0 chr4 49781051 49781175 -134507487 + MIR3 SINE MIR 82 206 -2 2104 94 21 3 chr4 49781774 49782061 -134506601 + AluSc SINE Alu 4 295 -14 1829 274 136 63 chr4 49782642 49783224 -134505438 + HAL1 LINE L1 55 593 -1914 360 0 0 0 chr4 49783224 49783264 -134505398 + (TG)n Simple_repeat Simple_repeat 2 41 0 1829 274 136 63 chr4 49783264 49783741 -134504921 + HAL1 LINE L1 593 1191 -1316 221 255 0 0 chr4 49783940 49783991 -134504671 + (CATATA)n Simple_repeat Simple_repeat 6 56 0 286 303 46 0 chr4 49784070 49784179 -134504483 - L1MA9 LINE L1 -38 6274 6161 204 67 0 0 chr4 49784631 49784661 -134504001 + (A)n Simple_repeat Simple_repeat 1 30 0 682 245 112 5 chr4 49784837 49785025 -134503637 + MIR SINE MIR 28 235 -27 318 187 99 22 chr4 49785138 49785229 -134503433 + MER5A DNA MER1_type 9 106 -83 735 109 0 0 chr4 49785319 49785429 -134503233 - AluSg/x SINE Alu -13 299 190 618 289 69 10 chr4 49786364 49786568 -134502094 - MIR SINE MIR -32 230 15 31 0 0 0 chr4 49787459 49787490 -134501172 + AT_rich Low_complexity Low_complexity 1 31 0 1905 94 0 43 chr4 49788672 49788948 -134499714 - AluSc SINE Alu -45 264 1 21 36 0 0 chr4 49788997 49789025 -134499637 + AT_rich Low_complexity Low_complexity 1 28 0 201 156 0 0 chr4 49789930 49789962 -134498700 + MIR3 SINE MIR 129 160 -48 906 147 7 0 chr4 49791405 49791548 -134497114 + AluSg/x SINE Alu 160 303 -9 898 196 0 0 chr4 49791642 49791795 -134496867 - FRAM SINE Alu -24 152 1 22 0 0 0 chr4 49792002 49792024 -134496638 + AT_rich Low_complexity Low_complexity 1 22 0 2225 96 0 16 chr4 49792698 49793001 -134495661 + AluSx SINE Alu 1 298 -14 232 264 23 46 chr4 49794892 49794979 -134493683 - MIR SINE MIR -148 114 30 491 304 199 5 chr4 49795035 49795236 -134493426 + MIR SINE MIR 23 262 0 745 147 0 22 chr4 49796687 49796823 -134491839 + FLAM_C SINE Alu 1 133 0 306 0 0 0 chr4 49797051 49797085 -134491577 + (TA)n Simple_repeat Simple_repeat 2 35 0 311 0 26 0 chr4 49798119 49798158 -134490504 + (TAGA)n Simple_repeat Simple_repeat 2 41 0 1723 142 58 0 chr4 49800014 49800289 -134488373 + AluJb SINE Alu 2 292 -20 21 57 0 0 chr4 49800580 49800615 -134488047 + AT_rich Low_complexity Low_complexity 1 35 0 286 306 14 0 chr4 49800794 49800866 -134487796 - MER112 DNA MER1_type -1 259 187 288 222 200 0 chr4 49800883 49800973 -134487689 - L2 LINE L2 -1 3312 3205 1988 127 33 0 chr4 49801327 49801626 -134487036 - AluSp SINE Alu -4 309 1 1659 193 3 3 chr4 49801838 49802138 -134486524 - AluJb SINE Alu -7 305 6 351 288 104 43 chr4 49804191 49804354 -134484308 - MER5A DNA MER1_type 0 189 17 279 303 83 48 chr4 49804490 49804635 -134484027 + L2 LINE L2 2935 3084 -188 360 297 99 42 chr4 49804918 49805130 -134483532 + MIR SINE MIR 26 249 -13 974 280 72 28 chr4 49805267 49805738 -134482924 - L2 LINE L2 0 3313 2822 2326 103 0 0 chr4 49805913 49806223 -134482439 - AluSx SINE Alu -2 310 1 23 33 0 0 chr4 49806960 49806990 -134481672 + AT_rich Low_complexity Low_complexity 1 30 0 3321 147 14 49 chr4 49807975 49808643 -134480019 + L1MB2 LINE L1 5528 6171 0 189 239 209 0 chr4 49808739 49808806 -134479856 - MIR SINE MIR -24 238 158 488 297 68 22 chr4 49808992 49809214 -134479448 + MIR SINE MIR 13 244 -18 910 179 14 43 chr4 49809440 49809647 -134479015 + AluJo SINE Alu 1 201 -111 352 180 0 40 chr4 49809650 49809750 -134478912 + GA-rich Low_complexity Low_complexity 1 96 0 25 31 0 0 chr4 49811413 49811445 -134477217 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr4 49811729 49811754 -134476908 + AT_rich Low_complexity Low_complexity 1 25 0 1864 169 3 6 chr4 49811765 49812078 -134476584 + AluJo SINE Alu 1 312 0 1116 119 49 22 chr4 49813221 49813406 -134475256 + MER30B DNA MER1_type 1 190 0 1709 157 45 14 chr4 49813467 49813754 -134474908 + AluJo SINE Alu 1 296 -16 816 182 0 0 chr4 49813756 49813888 -134474774 - MER2 DNA MER2_type -212 133 2 748 298 171 22 chr4 49814651 49815060 -134473602 + L2 LINE L2 2844 3313 0 1768 88 0 13 chr4 49815538 49815777 -134472885 - AluSc SINE Alu -2 307 72 2277 92 3 0 chr4 49815786 49816078 -134472584 - AluSc SINE Alu -16 293 1 280 269 0 15 chr4 49816168 49816235 -134472427 + L2 LINE L2 3246 3311 -2 409 282 214 19 chr4 49817600 49817806 -134470856 + MIR SINE MIR 16 261 -1 1820 170 0 10 chr4 49818043 49818343 -134470319 + AluJo SINE Alu 1 297 -15 209 128 0 106 chr4 49820473 49820520 -134468142 + L2 LINE L2 3272 3313 0 457 240 44 87 chr4 49821071 49821300 -134467362 - MER112 DNA MER1_type -41 219 1 393 180 33 71 chr4 49821641 49821824 -134466838 + (TATATG)n Simple_repeat Simple_repeat 1 176 0 223 174 41 46 chr4 49821835 49822034 -134466628 + (TATATG)n Simple_repeat Simple_repeat 1 198 0 239 121 24 60 chr4 49822111 49822194 -134466468 + (TATATG)n Simple_repeat Simple_repeat 1 80 0 466 288 62 23 chr4 49822375 49822552 -134466110 + MLT1L LTR MaLR 93 276 -339 184 118 24 82 chr4 49823032 49823117 -134465545 + (TATATG)n Simple_repeat Simple_repeat 1 80 0 24 0 0 0 chr4 49823283 49823307 -134465355 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr4 49824448 49824476 -134464186 + AT_rich Low_complexity Low_complexity 1 28 0 358 337 97 29 chr4 49824976 49825429 -134463233 + L2 LINE L2 2766 3268 -4 209 224 35 17 chr4 49825744 49825802 -134462860 + L2 LINE L2 1974 2032 -1282 525 335 73 52 chr4 49826030 49826863 -134461799 + L2 LINE L2 2199 3051 -221 269 353 53 23 chr4 49826996 49827129 -134461533 + L2 LINE L2 3136 3272 0 2072 132 16 0 chr4 49828410 49828714 -134459948 + AluSx SINE Alu 1 309 -3 642 266 89 0 chr4 49828990 49829193 -134459469 + MER102a DNA MER1_type 85 305 -25 21 36 0 0 chr4 49829288 49829316 -134459346 + AT_rich Low_complexity Low_complexity 1 28 0 317 201 161 84 chr4 49829894 49829978 -134458684 - L1ME4a LINE L1 -4 6117 6041 2307 98 3 0 chr4 49829978 49830275 -134458387 + AluSx SINE Alu 1 298 -14 317 201 161 84 chr4 49830275 49830439 -134458223 - L1ME4a LINE L1 -80 6041 5850 283 281 0 35 chr4 49830460 49830574 -134458088 - L1ME4a LINE L1 -341 5780 5671 366 23 0 0 chr4 49831627 49831649 -134457013 + (CA)n Simple_repeat Simple_repeat 1 65 0 366 23 0 0 chr4 49831649 49831692 -134456970 + (CA)n Simple_repeat Simple_repeat 2 44 0 25 31 0 0 chr4 49833159 49833191 -134455471 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr4 49834100 49834136 -134454526 + AT_rich Low_complexity Low_complexity 1 36 0 383 347 62 103 chr4 49835416 49835805 -134452857 + L2 LINE L2 2898 3270 -2 202 280 144 30 chr4 49837371 49837503 -134451159 + L2 LINE L2 2343 2489 -825 272 265 44 108 chr4 49837660 49837909 -134450753 - L2 LINE L2 -176 3096 2864 1178 275 108 51 chr4 49838443 49838527 -134450135 + L2 LINE L2 2432 2510 -803 2090 132 3 0 chr4 49838527 49838830 -134449832 - AluSx SINE Alu -8 304 1 1178 275 108 51 chr4 49838830 49839524 -134449138 + L2 LINE L2 2510 3266 -47 857 145 135 40 chr4 49840313 49840513 -134448149 - MER20 DNA MER1_type 0 219 1 210 208 0 0 chr4 49841859 49841907 -134446755 + L2 LINE L2 3264 3311 -2 247 360 61 0 chr4 49845101 49845215 -134443447 + L2 LINE L2 3152 3272 0 254 266 38 13 chr4 49845311 49845390 -134443272 - MIR SINE MIR -66 142 62 24 0 0 0 chr4 49845390 49845414 -134443248 + AT_rich Low_complexity Low_complexity 1 24 0 35625 36 1 10 chr4 49845880 49851099 -134437563 + L1PA3 LINE L1 984 6154 -1 1447 165 16 53 chr4 49851103 49851362 -134437300 + L1MB8 LINE L1 5861 6107 -71 1601 201 3 3 chr4 49851362 49851655 -134437007 - AluJo SINE Alu -19 293 1 1447 165 16 53 chr4 49851655 49851716 -134436946 + L1MB8 LINE L1 6107 6169 -9 262 211 103 103 chr4 49853196 49853352 -134435310 + MIR SINE MIR 97 252 -10 2300 102 0 0 chr4 49853684 49853978 -134434684 + AluSc SINE Alu 1 294 -15 1603 133 28 59 chr4 49853988 49854030 -134434632 - L1MB3 LINE L1 -28 6155 6113 2102 126 3 7 chr4 49854030 49854339 -134434323 + AluSg SINE Alu 1 308 -2 1603 133 28 59 chr4 49854339 49854620 -134434042 - L1MB3 LINE L1 -70 6113 5842 279 272 79 18 chr4 49854775 49854889 -134433773 - MIR SINE MIR -30 232 112 212 252 55 63 chr4 49854915 49855042 -134433620 + L2 LINE L2 3081 3206 -107 856 128 30 8 chr4 49855196 49855329 -134433333 + AluJo SINE Alu 1 136 -176 2122 102 3 3 chr4 49855469 49855753 -134432909 - AluSx SINE Alu -28 284 1 230 135 0 0 chr4 49855967 49856004 -134432658 + U2 snRNA snRNA 6 42 -146 955 264 151 71 chr4 49856918 49856944 -134431718 + L2 LINE L2 2317 2339 -974 1935 148 0 0 chr4 49856944 49857256 -134431406 - AluJb SINE Alu 0 312 1 955 264 151 71 chr4 49857256 49857617 -134431045 + L2 LINE L2 2339 2670 -643 1695 185 0 20 chr4 49857617 49857749 -134430913 + AluJo SINE Alu 1 134 -178 272 27 27 0 chr4 49857749 49857786 -134430876 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1695 185 0 20 chr4 49857786 49857951 -134430711 + AluJo SINE Alu 134 292 -20 955 264 151 71 chr4 49857951 49858477 -134430185 + L2 LINE L2 2670 3312 -1 3391 122 30 22 chr4 49859249 49859789 -134428873 + MER44D DNA MER2_type 6 604 -1 508 264 125 71 chr4 49860086 49860216 -134428446 + MLT1I LTR MaLR 39 161 -248 2262 93 0 0 chr4 49860216 49860520 -134428142 + AluSx SINE Alu 4 307 0 508 264 125 71 chr4 49860520 49860738 -134427924 + MLT1I LTR MaLR 161 409 0 6198 131 112 87 chr4 49861027 49862560 -134426102 + L1MCa LINE L1 4 1573 -4853 13746 135 28 24 chr4 49862560 49865087 -134423575 + L1P3 LINE L1 1 2854 -3607 6903 67 1 2 chr4 49865087 49866753 -134421909 + L1PA7 LINE L1 4480 6154 0 3454 162 33 56 chr4 49866768 49866807 -134421855 + L1MCa LINE L1 1603 1641 -4785 2318 105 3 6 chr4 49866807 49867120 -134421542 + AluSx SINE Alu 1 312 0 3454 162 33 56 chr4 49867120 49868475 -134420187 + L1MCa LINE L1 1641 3026 -3400 1399 18 0 0 chr4 49868493 49868660 -134420002 - L1HS LINE L1 -1131 5015 4849 * 7651 12 0 0 chr4 49868658 49869798 -134418864 + L1HS LINE L1 5016 6155 0 6208 204 34 102 chr4 49869805 49870381 -134418281 + L1MCa LINE L1 3042 3656 -2770 2437 100 0 0 chr4 49870381 49870691 -134417971 + AluSx SINE Alu 1 310 -2 6208 204 34 102 chr4 49870691 49870811 -134417851 + L1MCa LINE L1 3656 3783 -2643 1952 110 79 3 chr4 49870811 49871101 -134417561 + AluSx SINE Alu 1 312 0 6208 204 34 102 chr4 49871101 49872330 -134416332 + L1MCa LINE L1 3783 5095 -1331 1538 188 3 28 chr4 49872330 49872617 -134416045 - AluJo SINE Alu -30 282 3 6208 204 34 102 chr4 49872617 49872932 -134415730 + L1MCa LINE L1 5095 5098 -1328 2113 132 0 0 chr4 49872932 49873235 -134415427 + AluSx SINE Alu 1 303 -9 6208 204 34 102 chr4 49873235 49873485 -134415177 + L1MCa LINE L1 5098 5364 -1062 534 247 14 74 chr4 49874411 49874707 -134413955 + L1MC4 LINE L1 7759 8036 -6 230 140 0 18 chr4 49875339 49875396 -134413266 - L1MB8 LINE L1 0 6178 6123 1850 181 60 59 chr4 49875402 49875931 -134412731 - L1M4 LINE L1 -826 5320 4791 2790 173 108 9 chr4 49875940 49876570 -134412092 - L1MB5 LINE L1 0 6174 5483 1913 102 92 18 chr4 49876573 49876857 -134411805 - AluSx SINE Alu -7 305 1 941 337 111 37 chr4 49876865 49877560 -134411102 - L3 LINE CR1 -473 1104 359 1663 185 7 7 chr4 49877866 49878164 -134410498 + AluJo SINE Alu 1 298 -14 1764 166 0 0 chr4 49878592 49878863 -134409799 + AluJo SINE Alu 12 282 -30 10606 40 0 0 chr4 49879080 49881159 -134407503 + L1PA5 LINE L1 4057 6154 0 803 157 162 10 chr4 49881320 49881517 -134407145 - MLT1D LTR MaLR 0 505 279 838 134 7 34 chr4 49881517 49881666 -134406996 - AluJo SINE Alu -167 145 1 741 181 32 74 chr4 49881669 49881885 -134406777 - MLT1D LTR MaLR -298 207 1 218 205 192 122 chr4 49881886 49882042 -134406620 - MIR SINE MIR -40 222 56 904 112 0 8 chr4 49882083 49882208 -134406454 - AluSg/x SINE Alu -18 292 169 953 193 66 88 chr4 49882223 49882585 -134406077 - L1M4 LINE L1 -1774 4372 4019 2014 127 0 3 chr4 49882585 49882893 -134405769 - AluSx SINE Alu 0 307 1 390 21 0 0 chr4 49882919 49882966 -134405696 + (TG)n Simple_repeat Simple_repeat 2 48 0 2232 156 48 88 chr4 49883232 49883834 -134404828 + MER7C DNA MER2_type 14 591 -11 1034 238 40 13 chr4 49883850 49884153 -134404509 + MLT1A1 LTR MaLR 55 365 0 207 0 0 0 chr4 49885022 49885045 -134403617 + (A)n Simple_repeat Simple_repeat 1 23 0 1886 150 0 26 chr4 49885094 49885401 -134403261 + AluJo SINE Alu 1 299 -13 5084 170 64 31 chr4 49885565 49885813 -134402849 + L1MA9 LINE L1 4000 4238 -2074 1863 142 0 4 chr4 49885813 49886111 -134402551 + AluSx SINE Alu 12 308 0 5084 170 64 31 chr4 49886111 49886162 -134402500 + L1MA9 LINE L1 4238 4286 -2026 1730 176 0 7 chr4 49886162 49886475 -134402187 + AluJo SINE Alu 1 311 0 5084 170 64 31 chr4 49886475 49886765 -134401897 + L1MA9 LINE L1 4286 4565 -1747 2185 116 0 0 chr4 49886765 49887058 -134401604 - AluSg SINE Alu -17 293 1 5084 170 64 31 chr4 49887058 49888135 -134400527 + L1MA9 LINE L1 4565 5732 -580 311 230 22 30 chr4 49888702 49888837 -134399825 - L1MC5 LINE L1 -910 7051 6918 226 75 100 0 chr4 49888892 49888972 -134399690 + (TA)n Simple_repeat Simple_repeat 2 89 0 1982 137 129 26 chr4 49888976 49889364 -134399298 - MSTA LTR MaLR 0 428 1 1562 132 30 20 chr4 49889369 49889664 -134398998 + L1MA9 LINE L1 5783 6080 -232 695 282 53 25 chr4 49890010 49890329 -134398333 + Charlie7 DNA MER1_type 208 535 -2077 700 190 24 79 chr4 49890342 49890438 -134398224 + L1MD2 LINE L1 5022 5122 -1035 2024 117 42 0 chr4 49890438 49890721 -134397941 + AluSg SINE Alu 1 295 -15 700 190 24 79 chr4 49890721 49890764 -134397898 + L1MD2 LINE L1 5122 5166 -991 1725 162 14 20 chr4 49890764 49891060 -134397602 + AluJo SINE Alu 1 294 -18 700 190 24 79 chr4 49891060 49891237 -134397425 + L1MD2 LINE L1 5166 5316 -841 2717 193 77 73 chr4 49891260 49892173 -134396489 + L1MD2 LINE L1 5411 6326 -33 259 214 175 31 chr4 49892179 49892339 -134396323 + Charlie7 DNA MER1_type 2285 2421 -191 2411 93 3 0 chr4 49892339 49892649 -134396013 - AluSp SINE Alu 0 313 3 259 214 175 31 chr4 49892649 49892745 -134395917 + Charlie7 DNA MER1_type 2421 2578 -34 201 286 63 0 chr4 49892967 49893030 -134395632 + MIR3 SINE MIR 118 184 -24 574 176 0 0 chr4 49894213 49894315 -134394347 + AluJb SINE Alu 196 297 -15 225 0 0 0 chr4 49894594 49894619 -134394043 + (A)n Simple_repeat Simple_repeat 1 25 0 316 161 16 0 chr4 49894862 49894924 -134393738 + HsTC2 DNA Tc2 1227 1289 -609 1591 165 32 29 chr4 49895567 49895846 -134392816 + AluJo SINE Alu 10 289 -23 579 164 47 23 chr4 49895979 49896207 -134392455 + L1MB7 LINE L1 5915 6183 -1 2142 107 10 7 chr4 49896461 49896759 -134391903 - AluSx SINE Alu -13 299 1 249 108 0 0 chr4 49897958 49897995 -134390667 + (A)n Simple_repeat Simple_repeat 1 37 0 795 141 0 22 chr4 49898067 49898202 -134390460 - FLAM_C SINE Alu -1 132 1 25 31 0 0 chr4 49898739 49898771 -134389891 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 49899279 49899300 -134389362 + AT_rich Low_complexity Low_complexity 1 21 0 1064 170 5 50 chr4 49899819 49900037 -134388625 + AluJo SINE Alu 1 208 -104 22 88 0 0 chr4 49901417 49901474 -134387188 + GC_rich Low_complexity Low_complexity 1 57 0 1802 131 4 4 chr4 49904506 49904774 -134383888 + AluSx SINE Alu 1 268 -44 351 0 0 0 chr4 49904785 49904824 -134383838 + (CA)n Simple_repeat Simple_repeat 1 39 0 341 115 0 103 chr4 49904910 49904997 -134383665 + AluS SINE Alu 3 80 -222 222 37 0 0 chr4 49905234 49905261 -134383401 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 565 250 0 9 chr4 49905268 49905384 -134383278 - FLAM_C SINE Alu -17 116 2 1845 176 9 9 chr4 49905944 49906285 -134382377 - MER58B DNA MER1_type 0 341 1 492 242 11 0 chr4 49906336 49906427 -134382235 - L2 LINE L2 -27 3245 3154 333 0 0 0 chr4 49906853 49906890 -134381772 + (TA)n Simple_repeat Simple_repeat 1 37 0 257 228 11 33 chr4 49907010 49907102 -134381560 + L1MC5 LINE L1 7828 7917 -44 228 156 52 26 chr4 49907299 49907376 -134381286 + (TA)n Simple_repeat Simple_repeat 1 79 0 265 342 99 42 chr4 49908097 49908591 -134380071 + L2 LINE L2 2157 2678 -636 449 235 68 130 chr4 49909271 49909594 -134379068 + L2 LINE L2 3011 3313 0 857 305 122 56 chr4 49909603 49910294 -134378368 - L2 LINE L2 -167 3146 2394 21 0 0 0 chr4 49911029 49911050 -134377612 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr4 49911506 49911533 -134377129 + AT_rich Low_complexity Low_complexity 1 27 0 26 0 0 0 chr4 49912549 49912575 -134376087 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr4 49912606 49912627 -134376035 + AT_rich Low_complexity Low_complexity 1 21 0 5752 56 1 0 chr4 49913159 49913876 -134374786 + L1PA7 LINE L1 5434 6151 -3 5727 176 55 3 chr4 49913948 49915567 -134373095 + L1MC2 LINE L1 4627 6336 -8 29 0 0 0 chr4 49916121 49916150 -134372512 + AT_rich Low_complexity Low_complexity 1 29 0 298 218 83 143 chr4 49916182 49916315 -134372347 + MER63 DNA MER1_type 2 752 -310 313 301 149 42 chr4 49916656 49916945 -134371717 - L1M4 LINE L1 -1092 5054 4735 274 304 104 24 chr4 49917605 49917730 -134370932 + MIR3 SINE MIR 26 160 -48 458 280 67 89 chr4 49918377 49918709 -134369953 + L1M4 LINE L1 4265 4581 -1565 2243 92 7 0 chr4 49918709 49919002 -134369660 - AluSp SINE Alu -18 295 1 458 280 67 89 chr4 49919002 49919125 -134369537 + L1M4 LINE L1 4581 4705 -1441 207 0 0 0 chr4 49919437 49919460 -134369202 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 290 270 64 31 chr4 49919698 49919885 -134368777 + L1M4 LINE L1 5259 5464 -714 279 0 0 0 chr4 49919885 49919916 -134368746 + (TA)n Simple_repeat Simple_repeat 1 31 0 290 270 64 31 chr4 49919916 49920064 -134368598 + L1M4 LINE L1 5464 5606 -572 518 209 35 26 chr4 49920364 49920479 -134368183 + MER5B DNA MER1_type 63 178 0 22 35 0 0 chr4 49922260 49922289 -134366373 + AT_rich Low_complexity Low_complexity 1 29 0 182 306 16 32 chr4 49922826 49922888 -134365774 + L2 LINE L2 3251 3311 -2 392 306 169 14 chr4 49922969 49923275 -134365387 + L2 LINE L2 2702 3049 -264 987 168 105 3 chr4 49923408 49923759 -134364903 + L1MB7 LINE L1 5751 6184 0 23 78 0 0 chr4 49924775 49924826 -134363836 + AT_rich Low_complexity Low_complexity 1 51 0 198 350 121 42 chr4 49925067 49925373 -134363289 - L2 LINE L2 -16 3256 2927 501 160 160 19 chr4 49925867 49925973 -134362689 - FRAM SINE Alu -38 138 18 522 87 8 63 chr4 49925974 49926101 -134362561 + (TG)n Simple_repeat Simple_repeat 2 121 0 638 189 0 0 chr4 49926120 49926231 -134362431 - FLAM_C SINE Alu -31 112 2 185 218 0 73 chr4 49926639 49926694 -134361968 - L3 LINE CR1 -943 634 584 304 309 111 16 chr4 49927592 49927718 -134360944 + MIR SINE MIR 23 160 -102 369 86 0 0 chr4 49928558 49928616 -134360046 + (CAG)n Simple_repeat Simple_repeat 1 58 0 26 0 0 0 chr4 49928988 49929014 -134359648 + AT_rich Low_complexity Low_complexity 1 26 0 268 116 84 0 chr4 49930396 49930491 -134358171 + (TA)n Simple_repeat Simple_repeat 1 103 0 259 178 37 9 chr4 49930568 49930675 -134357987 + (TA)n Simple_repeat Simple_repeat 1 110 0 260 194 89 16 chr4 49930675 49930799 -134357863 + (TATATG)n Simple_repeat Simple_repeat 3 135 0 280 176 67 0 chr4 49930799 49930964 -134357698 + (TA)n Simple_repeat Simple_repeat 2 177 0 384 131 66 24 chr4 49930995 49931345 -134357317 + (TA)n Simple_repeat Simple_repeat 1 364 0 396 101 28 73 chr4 49931345 49931524 -134357138 + (TATATG)n Simple_repeat Simple_repeat 1 171 0 237 167 115 0 chr4 49931524 49931602 -134357060 + L1MCa LINE L1 1993 2079 -4347 25 0 0 0 chr4 49931602 49931627 -134357035 + AT_rich Low_complexity Low_complexity 1 25 0 943 202 0 0 chr4 49932049 49932227 -134356435 - AluJo SINE Alu -15 297 120 180 0 0 0 chr4 49932229 49932249 -134356413 + (T)n Simple_repeat Simple_repeat 1 20 0 1370 161 14 65 chr4 49933334 49933626 -134355036 + AluJb SINE Alu 1 277 -35 216 0 0 0 chr4 49933627 49933651 -134355011 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 1900 151 0 10 chr4 49933943 49934242 -134354420 + AluSx SINE Alu 1 296 -16 1200 111 0 0 chr4 49934254 49934434 -134354228 + (GAA)n Simple_repeat Simple_repeat 1 180 0 207 0 0 0 chr4 49934447 49934470 -134354192 + (CAG)n Simple_repeat Simple_repeat 2 24 0 896 140 202 88 chr4 49934470 49934742 -134353920 + L1MC3 LINE L1 6760 7062 -723 1719 180 27 12 chr4 49934757 49935090 -134353572 + MER68 LTR ERV1 7 344 -218 2774 192 34 12 chr4 49935091 49935675 -134352987 + L1MC3 LINE L1 7189 7785 0 625 291 61 5 chr4 49935685 49935898 -134352764 + L1MEc LINE L1 34 258 -6138 1271 259 74 85 chr4 49935910 49936624 -134352038 + L1MEc LINE L1 541 1244 -5152 1253 184 111 8 chr4 49936624 49936885 -134351777 + AluJo SINE Alu 4 291 -21 1271 259 74 85 chr4 49936885 49937101 -134351561 + L1MEc LINE L1 1244 1461 -4935 837 148 0 7 chr4 49937113 49937248 -134351414 + FLAM_C SINE Alu 7 140 -3 2062 254 45 21 chr4 49937262 49937797 -134350865 + L1MEc LINE L1 1538 2097 -4299 198 0 0 0 chr4 49937797 49937819 -134350843 + (TTTAA)n Simple_repeat Simple_repeat 2 23 0 2062 254 45 21 chr4 49937819 49938010 -134350652 + L1MEc LINE L1 2097 2282 -4114 1996 14 0 0 chr4 49938039 49938261 -134350401 + AluY SINE Alu 83 304 -7 206 326 96 7 chr4 49938335 49938470 -134350192 - L2 LINE L2 -142 3171 3025 233 302 21 31 chr4 49940181 49940277 -134348385 + MER94 DNA DNA 39 133 -1 2091 100 3 21 chr4 49940543 49940878 -134347784 + AluSx SINE Alu 1 330 0 236 273 15 15 chr4 49941073 49941139 -134347523 + MER5A DNA MER1_type 123 188 -1 28 0 0 0 chr4 49941588 49941616 -134347046 + AT_rich Low_complexity Low_complexity 1 28 0 197 347 56 0 chr4 49941911 49941983 -134346679 - MIR3 SINE MIR -24 184 109 201 379 0 0 chr4 49942013 49942071 -134346591 - L2 LINE L2 -10 3262 3205 2079 132 0 0 chr4 49942116 49942411 -134346251 - AluSx SINE Alu -17 295 1 1052 217 14 5 chr4 49942495 49942716 -134345946 + MER58A DNA MER1_type 2 224 0 465 108 0 24 chr4 49942791 49942874 -134345788 + Alu SINE Alu 232 312 0 265 274 105 24 chr4 49943033 49943157 -134345505 - L2 LINE L2 -3 3310 3177 56 33 0 49 chr4 49943997 49944119 -134344543 + AT_rich Low_complexity Low_complexity 1 116 0 25 65 0 0 chr4 49944153 49944199 -134344463 + AT_rich Low_complexity Low_complexity 1 46 0 24 85 0 0 chr4 49944359 49944418 -134344244 + AT_rich Low_complexity Low_complexity 1 59 0 5891 94 17 46 chr4 49944419 49944620 -134344042 - L1MA3 LINE L1 -1 6304 6099 2093 118 4 0 chr4 49944620 49944899 -134343763 + AluSx SINE Alu 6 285 -27 306 73 0 0 chr4 49944899 49944940 -134343722 + (TA)n Simple_repeat Simple_repeat 2 42 0 5891 94 17 46 chr4 49944940 49945681 -134342981 - L1MA3 LINE L1 -204 6101 5388 2080 117 3 13 chr4 49945849 49946167 -134342495 + AluSq SINE Alu 1 313 0 1287 101 0 0 chr4 49946167 49946346 -134342316 + AluSg/x SINE Alu 134 312 0 882 222 0 0 chr4 49947845 49948012 -134340650 - FAM SINE Alu -5 170 4 21 57 0 0 chr4 49948517 49948552 -134340110 + AT_rich Low_complexity Low_complexity 1 35 0 2123 61 0 0 chr4 49948959 49949221 -134339441 + AluY SINE Alu 41 302 -9 874 75 0 0 chr4 49949504 49949624 -134339038 - AluY SINE Alu -5 306 187 2607 166 15 27 chr4 49949624 49950214 -134338448 + pTR5 LTR ERV1 745 1327 -1111 1412 76 0 72 chr4 49950214 49950247 -134338415 - AluY SINE Alu -92 219 185 2792 133 227 61 chr4 49950247 49950952 -134337710 + LTR12 LTR ERV1 5 826 0 1412 76 0 72 chr4 49950952 49951154 -134337508 - AluY SINE Alu -126 185 1 2336 85 0 0 chr4 49951875 49952169 -134336493 - AluSx SINE Alu -13 299 6 813 75 0 9 chr4 49952574 49952680 -134335982 + AluSc SINE Alu 1 105 -204 362 86 0 0 chr4 49952749 49952807 -134335855 + L1P LINE L1 4980 5037 -1109 1396 96 0 5 chr4 49952807 49952995 -134335667 + AluSc SINE Alu 117 303 -6 21 36 0 0 chr4 49953076 49953104 -134335558 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr4 49953334 49953372 -134335290 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr4 49953614 49953640 -134335022 + AT_rich Low_complexity Low_complexity 1 26 0 239 298 67 0 chr4 49953860 49953964 -134334698 + L1ME LINE L1 5494 5604 -517 1944 102 38 6 chr4 49953967 49954281 -134334381 + L1MA5A LINE L1 5964 6287 -10 7086 54 3 2 chr4 49956724 49957893 -134330769 + L1PA7 LINE L1 4980 6154 0 196 192 68 123 chr4 49958611 49958684 -134329978 - L2 LINE L2 -1 3312 3244 253 239 87 33 chr4 49958751 49958843 -134329819 + LTR16A LTR ERVL 273 369 -81 1002 196 59 66 chr4 49959419 49959874 -134328788 - L1MC5 LINE L1 -36 7925 7474 2105 71 57 4 chr4 49960224 49960504 -134328158 - AluSq SINE Alu -18 295 1 239 272 98 33 chr4 49962060 49962152 -134326510 + L3 LINE CR1 370 467 -1110 306 340 42 60 chr4 49962311 49962526 -134326136 + L3 LINE CR1 1350 1560 -17 26 0 0 0 chr4 49963067 49963093 -134325569 + AT_rich Low_complexity Low_complexity 1 26 0 2215 112 7 3 chr4 49963122 49963426 -134325236 - AluSx SINE Alu -7 305 1 398 227 154 0 chr4 49964046 49964156 -134324506 - L2 LINE L2 -2 3311 3185 2414 59 0 34 chr4 49964347 49964668 -134323994 - AluY SINE Alu -1 310 1 188 189 27 0 chr4 49965380 49965417 -134323245 - MIR SINE MIR -156 106 69 695 296 25 12 chr4 49965617 49965857 -134322805 + L1ME LINE L1 5572 5814 -307 520 195 93 0 chr4 49965983 49966101 -134322561 + MIR SINE MIR 119 247 -15 252 235 0 29 chr4 49966160 49966228 -134322434 - L1ME4a LINE L1 -65 6056 5991 21 0 0 0 chr4 49966331 49966352 -134322310 + AT_rich Low_complexity Low_complexity 1 21 0 437 308 36 55 chr4 49966737 49966850 -134321812 + MIR SINE MIR 3 117 -145 1936 148 27 0 chr4 49966850 49967148 -134321514 - AluSx SINE Alu -6 306 1 437 308 36 55 chr4 49967148 49967287 -134321375 + MIR SINE MIR 117 250 -12 415 296 16 0 chr4 49967352 49967477 -134321185 - L1ME4a LINE L1 -387 5734 5608 270 222 0 0 chr4 49967782 49967836 -134320826 + L1MC5 LINE L1 7701 7754 -207 480 282 17 66 chr4 50018036 50018217 -134270445 - MIR SINE MIR -86 176 5 185 133 0 0 chr4 50018287 50018317 -134270345 + (TA)n Simple_repeat Simple_repeat 2 31 0 1880 152 26 0 chr4 50018445 50018747 -134269915 - AluSq SINE Alu -2 311 2 1540 184 0 39 chr4 50018773 50019078 -134269584 + AluJo SINE Alu 6 298 -14 2060 141 0 0 chr4 50019204 50019516 -134269146 - AluSx SINE Alu 0 312 1 497 162 44 73 chr4 50019811 50019947 -134268715 + MSTB1 LTR MaLR 22 153 -279 234 209 0 0 chr4 50019952 50019995 -134268667 - MSTB1 LTR MaLR -224 208 166 941 171 28 33 chr4 50020131 50020342 -134268320 + MSTB1 LTR MaLR 223 432 0 534 315 78 35 chr4 50020342 50020688 -134267974 + L2 LINE L2 1903 2263 -1051 270 286 136 43 chr4 50020809 50020949 -134267713 - L2 LINE L2 -838 2476 2324 2329 114 0 0 chr4 50021079 50021386 -134267276 - AluY SINE Alu -3 308 2 368 43 0 0 chr4 50021389 50021435 -134267227 - AluSq/x SINE Alu -170 133 88 1559 196 22 19 chr4 50021798 50022109 -134266553 - AluJo SINE Alu 0 312 1 584 166 27 139 chr4 50023194 50023381 -134265281 - Charlie1 DNA MER1_type -2550 211 46 291 255 210 32 chr4 50023711 50023868 -134264794 + MIR SINE MIR 3 187 -75 3812 124 151 126 chr4 50024231 50025343 -134263319 + pTR5 LTR ERV1 1299 2438 0 1783 189 3 0 chr4 50025452 50025749 -134262913 + AluSx SINE Alu 6 303 -9 872 248 195 19 chr4 50025871 50026230 -134262432 - L2 LINE L2 -4 3309 2888 229 222 172 30 chr4 50027006 50027105 -134261557 - MIR SINE MIR -74 188 76 574 192 206 0 chr4 50029232 50029378 -134259284 + MER45A DNA AcHobo 3 178 0 2094 110 3 3 chr4 50029437 50029744 -134258918 + AluSx SINE Alu 1 307 0 22 0 0 0 chr4 50029873 50029895 -134258767 + AT_rich Low_complexity Low_complexity 1 22 0 897 122 0 0 chr4 50029996 50030119 -134258543 + AluSg/x SINE Alu 176 298 -14 673 261 57 0 chr4 50030119 50030276 -134258386 + MIR SINE MIR 22 187 -75 605 244 47 47 chr4 50030543 50030736 -134257926 + MIR3 SINE MIR 13 205 -3 191 234 324 36 chr4 50030743 50030854 -134257808 - MIR3 SINE MIR -14 194 52 1310 197 78 19 chr4 50031297 50031383 -134257279 + MER58B DNA MER1_type 1 80 -2340 1736 155 3 62 chr4 50031383 50031705 -134256957 + AluJb SINE Alu 1 303 -9 1310 197 78 19 chr4 50031705 50031938 -134256724 + MER58B DNA MER1_type 80 339 -2 282 200 0 0 chr4 50031950 50032005 -134256657 - MER3 DNA MER1_type -2 207 153 1619 156 85 0 chr4 50032006 50032313 -134256349 - MER68 LTR ERV1 -95 467 135 764 304 16 24 chr4 50032679 50032932 -134255730 + MIR SINE MIR 12 262 0 245 259 17 0 chr4 50033632 50033690 -134254972 + MER5A DNA MER1_type 26 84 -105 212 0 36 0 chr4 50034376 50034404 -134254258 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1879 104 0 11 chr4 50035040 50035300 -134253362 + AluSc SINE Alu 39 295 -14 1660 149 84 12 chr4 50035377 50035698 -134252964 + MER2 DNA MER2_type 1 344 0 332 297 148 7 chr4 50036006 50036161 -134252501 + L2 LINE L2 1894 2070 -1244 206 270 202 0 chr4 50036168 50036257 -134252405 - L2 LINE L2 -17 3296 3190 181 362 143 10 chr4 50036421 50036617 -134252045 + L2 LINE L2 2443 2664 -650 262 308 98 30 chr4 50036718 50036851 -134251811 + L2 LINE L2 3171 3312 -1 190 205 0 26 chr4 50036898 50036937 -134251725 - MIR SINE MIR -107 155 118 293 167 137 10 chr4 50036937 50037039 -134251623 - L1ME3A LINE L1 -206 5964 5850 359 263 96 23 chr4 50037039 50037136 -134251526 - MER63 DNA MER1_type 0 1061 973 2324 87 3 3 chr4 50037136 50037434 -134251228 + AluSc SINE Alu 1 298 -11 359 263 96 23 chr4 50037434 50037517 -134251145 - MER63 DNA MER1_type -88 973 1 1125 259 160 36 chr4 50037674 50038899 -134249763 - L1ME3A LINE L1 -541 5629 4234 23 33 0 0 chr4 50039148 50039178 -134249484 + AT_rich Low_complexity Low_complexity 1 30 0 3213 51 0 0 chr4 50039568 50039994 -134248668 + L1PA5 LINE L1 5746 6171 0 1811 143 49 7 chr4 50040632 50040918 -134247744 + AluJo SINE Alu 1 298 -14 261 336 66 95 chr4 50041349 50041623 -134247039 - L2 LINE L2 -2 3270 3005 298 239 104 153 chr4 50041762 50041984 -134246678 + MIR SINE MIR 46 256 -6 765 256 14 95 chr4 50042038 50042096 -134246566 + MER46C DNA MER2_type 1 62 -276 2333 78 10 3 chr4 50042096 50042405 -134246257 - AluY SINE Alu 0 311 1 765 256 14 95 chr4 50042405 50042713 -134245949 + MER46C DNA MER2_type 62 337 -1 991 150 61 0 chr4 50042856 50043036 -134245626 - MER3 DNA MER1_type -17 192 2 589 134 10 0 chr4 50043354 50043451 -134245211 - Tigger7 DNA MER2_type 0 2487 2390 1557 167 0 0 chr4 50043457 50043709 -134244953 - Tigger7 DNA MER2_type -481 252 1 553 314 13 7 chr4 50044338 50044491 -134244171 - MIR3 SINE MIR -15 193 40 2187 128 0 0 chr4 50044762 50045060 -134243602 + AluSx SINE Alu 1 298 -14 25 31 0 0 chr4 50045158 50045190 -134243472 + AT_rich Low_complexity Low_complexity 1 32 0 2188 102 24 0 chr4 50045617 50045911 -134242751 - AluSp SINE Alu -12 301 1 1797 166 3 3 chr4 50046745 50047041 -134241621 + AluJo SINE Alu 1 296 -16 1200 143 119 4 chr4 50047195 50047439 -134241223 - MER2 DNA MER2_type 0 345 74 258 180 60 0 chr4 50047471 50047521 -134241141 - MLT1G1 LTR MaLR -522 73 21 262 349 7 7 chr4 50048613 50048762 -134239900 - MLT1-int LTR MaLR -1221 150 2 5658 103 43 20 chr4 50048780 50049742 -134238920 - L1MA3 LINE L1 -6 7718 6735 721 176 7 29 chr4 50049764 50049900 -134238762 - FLAM_C SINE Alu 0 133 1 22 0 0 0 chr4 50049905 50049927 -134238735 + AT_rich Low_complexity Low_complexity 1 22 0 42308 40 2 2 chr4 50049927 50056078 -134232584 - L1PA4 LINE L1 -3 6152 3 14960 150 33 46 chr4 50056124 50056973 -134231689 - L1MA3 LINE L1 -818 6747 5888 2001 160 7 0 chr4 50056973 50057280 -134231382 - AluSx SINE Alu -3 309 1 14960 150 33 46 chr4 50057280 50057326 -134231336 - L1MA3 LINE L1 -1677 5888 5843 1718 179 0 45 chr4 50057326 50057493 -134231169 - AluJo SINE Alu -14 298 125 348 24 0 0 chr4 50057493 50057534 -134231128 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 1897 127 3 25 chr4 50057534 50057818 -134230844 - AluSc SINE Alu -31 278 1 1718 179 0 45 chr4 50057818 50057961 -134230701 - AluJo SINE Alu -185 127 1 14960 150 33 46 chr4 50057961 50059491 -134229171 - L1MA3 LINE L1 -1722 5843 4294 387 0 0 0 chr4 50059491 50059534 -134229128 + (TG)n Simple_repeat Simple_repeat 2 44 0 14960 150 33 46 chr4 50059534 50060773 -134227889 - L1MA3 LINE L1 -3271 4294 3040 1626 178 11 18 chr4 50060773 50061059 -134227603 + AluJb SINE Alu 2 285 -27 14960 150 33 46 chr4 50061059 50064222 -134224440 - L1MA3 LINE L1 -4525 3040 14 416 282 76 0 chr4 50064232 50064363 -134224299 - MLT2F LTR ERVL -4 659 519 382 293 92 56 chr4 50064368 50064617 -134224045 - MLT1H LTR MaLR -289 260 3 1004 233 34 4 chr4 50064661 50064897 -134223765 - MIR SINE MIR 0 262 20 263 304 253 8 chr4 50064914 50065151 -134223511 + L3 LINE CR1 1012 1306 -271 203 365 53 35 chr4 50065286 50065456 -134223206 + L3 LINE CR1 1345 1517 -60 485 273 0 0 chr4 50065518 50065617 -134223045 + L2 LINE L2 3193 3291 -22 371 206 0 43 chr4 50065635 50065727 -134222935 + Charlie8 DNA MER1_type 84 171 -2246 1826 146 36 7 chr4 50067113 50067415 -134221247 + AluSx SINE Alu 1 311 -1 2033 120 33 0 chr4 50067645 50067946 -134220716 + AluY SINE Alu 1 311 0 536 70 12 0 chr4 50068421 50068507 -134220155 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 2084 134 3 0 chr4 50068507 50068797 -134219865 - AluSx SINE Alu -21 291 1 2036 140 10 0 chr4 50068956 50069249 -134219413 - AluSg SINE Alu -14 296 1 329 74 0 19 chr4 50069532 50069543 -134219119 + (CAAAAA)n Simple_repeat Simple_repeat 2 12 -42 1904 169 7 0 chr4 50069543 50069851 -134218811 + AluJb SINE Alu 1 310 -2 329 74 0 19 chr4 50069851 50069893 -134218769 + (CAAAAA)n Simple_repeat Simple_repeat 12 54 0 450 0 0 0 chr4 50070304 50070354 -134218308 + (TG)n Simple_repeat Simple_repeat 1 50 0 2045 112 0 11 chr4 50070354 50070631 -134218031 - AluSx SINE Alu -33 279 6 649 153 48 65 chr4 50071008 50071132 -134217530 - FLAM_A SINE Alu -11 122 1 3936 51 0 2 chr4 50071204 50071690 -134216972 - L1P LINE L1 -924 5222 4738 19161 41 4 1 chr4 50071690 50074686 -134213976 - L1PA5 LINE L1 -4 6150 3152 7641 50 7 1 chr4 50074686 50075615 -134213047 + L1PA5 LINE L1 5220 6153 -1 22 0 0 0 chr4 50075868 50075890 -134212772 + AT_rich Low_complexity Low_complexity 1 22 0 202 349 39 31 chr4 50076261 50076390 -134212272 + L2 LINE L2 2754 2883 -431 199 283 38 57 chr4 50077175 50077281 -134211381 + MIR SINE MIR 20 123 -85 544 283 155 13 chr4 50077509 50077735 -134210927 - MIR SINE MIR -3 259 2 406 182 10 61 chr4 50077737 50077836 -134210826 - MER103 DNA DNA -40 126 33 223 349 12 12 chr4 50077855 50077938 -134210724 + L2 LINE L2 3230 3312 -1 840 161 0 54 chr4 50079186 50079335 -134209327 - FLAM_C SINE Alu -2 141 1 25 65 0 0 chr4 50079429 50079475 -134209187 + AT_rich Low_complexity Low_complexity 1 46 0 2162 93 7 7 chr4 50079564 50079855 -134208807 + AluSx SINE Alu 1 291 -21 315 70 0 0 chr4 50080043 50080086 -134208576 - L1PA5 LINE L1 -2 6152 6110 1388 230 108 43 chr4 50080179 50080649 -134208013 + MLT1D LTR MaLR 3 503 -2 1633 169 152 17 chr4 50080696 50081045 -134207617 - MSTD LTR MaLR 0 396 1 2028 131 0 55 chr4 50081085 50081413 -134207249 + AluSx SINE Alu 1 310 -2 25 31 0 0 chr4 50081485 50081517 -134207145 + AT_rich Low_complexity Low_complexity 1 32 0 1559 178 42 11 chr4 50081661 50081947 -134206715 + AluJb SINE Alu 1 295 -17 771 185 0 23 chr4 50082006 50082136 -134206526 + FLAM_A SINE Alu 1 127 -6 385 343 41 35 chr4 50082355 50082524 -134206138 - MER91A DNA MER1_type -26 170 1 1520 187 89 79 chr4 50082582 50083010 -134205652 - MLT1D LTR MaLR -53 452 21 973 241 100 60 chr4 50083574 50084026 -134204636 - L1MC4 LINE L1 -4 8038 7569 196 253 84 60 chr4 50084595 50084678 -134203984 - MIR3 SINE MIR -25 183 99 290 278 48 48 chr4 50084738 50084864 -134203798 - L2 LINE L2 -1 3312 3187 33 0 0 0 chr4 50085944 50085977 -134202685 + AT_rich Low_complexity Low_complexity 1 33 0 1352 197 161 0 chr4 50086007 50086261 -134202401 - AluJb SINE Alu -7 295 1 231 275 29 0 chr4 50086534 50086603 -134202059 - L1ME LINE L1 -287 5877 5807 1693 147 9 83 chr4 50087108 50087434 -134201228 - AluJo SINE Alu -10 302 1 261 254 0 0 chr4 50087660 50087723 -134200939 - MIR SINE MIR -4 258 196 1997 122 4 0 chr4 50088059 50088329 -134200333 + AluSx SINE Alu 21 291 -21 801 127 0 24 chr4 50088742 50088868 -134199794 + FLAM_C SINE Alu 21 143 0 2531 68 3 0 chr4 50089003 50089312 -134199350 - AluY SINE Alu -1 310 1 33 0 0 0 chr4 50089326 50089359 -134199303 + AT_rich Low_complexity Low_complexity 1 33 0 1517 196 18 7 chr4 50089537 50089818 -134198844 + AluJo SINE Alu 1 284 -28 234 293 131 90 chr4 50090204 50090539 -134198123 - L2 LINE L2 -23 3249 2901 231 326 83 48 chr4 50090518 50090855 -134197807 - L2 LINE L2 -922 2392 2044 * 323 266 70 35 chr4 50091150 50091319 -134197343 + MIR SINE MIR 4 181 -27 4302 118 9 37 chr4 50092673 50092793 -134195869 - MER41B LTR ERV1 0 635 513 2312 99 3 3 chr4 50092793 50093105 -134195557 + AluSx SINE Alu 1 312 0 4302 118 9 37 chr4 50093105 50093634 -134195028 - MER41B LTR ERV1 -122 513 4 431 268 185 56 chr4 50093794 50094189 -134194473 + L2 LINE L2 2855 3300 -13 273 57 0 0 chr4 50094189 50094224 -134194438 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 342 88 0 18 chr4 50094618 50094675 -134193987 - FAM SINE Alu -2 173 118 233 331 91 17 chr4 50095206 50095381 -134193281 + L2 LINE L2 2919 3106 -166 1179 167 0 6 chr4 50095440 50095614 -134193048 - FAM SINE Alu -2 173 1 280 121 0 61 chr4 50095615 50095681 -134192981 + (TCCC)n Simple_repeat Simple_repeat 4 65 0 193 281 0 0 chr4 50095694 50095751 -134192911 + CT-rich Low_complexity Low_complexity 4 60 0 24 207 0 0 chr4 50095751 50095809 -134192853 + AT_rich Low_complexity Low_complexity 1 58 0 300 205 31 18 chr4 50095809 50096027 -134192635 + A-rich Low_complexity Low_complexity 1 220 0 27 49 0 0 chr4 50096040 50096081 -134192581 + AT_rich Low_complexity Low_complexity 1 41 0 276 274 9 19 chr4 50096185 50096291 -134192371 + CT-rich Low_complexity Low_complexity 4 108 0 200 344 0 31 chr4 50096288 50096384 -134192278 + C-rich Low_complexity Low_complexity 3 95 0 * 751 112 0 42 chr4 50096416 50096559 -134192103 + (TTCC)n Simple_repeat Simple_repeat 2 138 0 362 104 0 0 chr4 50096563 50096611 -134192051 + (TCCCC)n Simple_repeat Simple_repeat 1 48 0 1183 146 24 29 chr4 50096611 50096817 -134191845 - AluJb SINE Alu -21 291 87 190 296 93 0 chr4 50096865 50096919 -134191743 - MIR SINE MIR -158 104 46 243 220 0 51 chr4 50097187 50097246 -134191416 + polypyrimidine Low_complexity Low_complexity 4 59 0 27 0 0 0 chr4 50097301 50097328 -134191334 + AT_rich Low_complexity Low_complexity 1 27 0 1717 93 0 0 chr4 50097328 50097543 -134191119 - L1PA8 LINE L1 -3 6169 5955 5684 54 0 14 chr4 50097546 50097949 -134190713 + L1PA8 LINE L1 5073 5480 -692 2174 114 0 0 chr4 50097949 50098238 -134190424 + AluSg SINE Alu 1 289 -21 5684 54 0 14 chr4 50098238 50098716 -134189946 + L1PA8 LINE L1 5480 5942 -230 712 265 35 0 chr4 50098755 50098925 -134189737 - MIR SINE MIR -86 176 1 1794 136 13 43 chr4 50099109 50099411 -134189251 + AluJb SINE Alu 11 303 -9 2058 88 0 4 chr4 50100031 50100292 -134188370 - AluSx SINE Alu -16 296 37 195 250 0 0 chr4 50101115 50101163 -134187499 + MIR SINE MIR 205 252 -10 188 215 31 62 chr4 50101251 50101316 -134187346 + L2 LINE L2 3182 3244 -69 5700 146 31 33 chr4 50102812 50104009 -134184653 - L1MC1 LINE L1 -2 6331 5198 195 42 0 0 chr4 50104009 50104033 -134184629 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 42645 37 26 3 chr4 50104033 50110010 -134178652 - L1PA3 LINE L1 -4 6151 32 2515 57 0 0 chr4 50110030 50110326 -134178336 - AluY SINE Alu -15 296 1 2005 111 7 14 chr4 50110355 50110652 -134178010 - AluSc SINE Alu -12 297 3 914 204 0 35 chr4 50110669 50110841 -134177821 - FRAM SINE Alu 0 166 1 368 275 76 64 chr4 50110954 50111398 -134177264 + L1MC5 LINE L1 7352 7904 -138 659 259 24 33 chr4 50111501 50111639 -134177023 + MIR SINE MIR 14 150 -112 2268 163 31 8 chr4 50111639 50111994 -134176668 - THE1B LTR MaLR 0 364 2 659 259 24 33 chr4 50111994 50112081 -134176581 + MIR SINE MIR 150 236 -26 2242 112 0 3 chr4 50113030 50113333 -134175329 - AluSg SINE Alu -6 304 3 28 29 0 0 chr4 50113362 50113397 -134175265 + AT_rich Low_complexity Low_complexity 1 35 0 377 270 88 14 chr4 50113408 50113579 -134175083 - MIR SINE MIR -34 228 46 377 242 42 21 chr4 50113593 50113688 -134174974 - L2 LINE L2 -7 3306 3210 956 153 45 17 chr4 50113893 50114069 -134174593 + FRAM SINE Alu 1 173 -3 1944 141 3 0 chr4 50114796 50115102 -134173560 - AluSx SINE Alu 0 307 1 2178 102 7 10 chr4 50115162 50115455 -134173207 - AluSx SINE Alu -20 292 1 497 214 26 58 chr4 50116043 50116197 -134172465 - L2 LINE L2 -9 3304 3156 182 114 0 29 chr4 50116199 50116234 -134172428 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 885 242 73 16 chr4 50116236 50116484 -134172178 + MIR SINE MIR 1 262 0 675 276 23 72 chr4 50116486 50116750 -134171912 - L2 LINE L2 -196 3117 2867 878 229 113 19 chr4 50116766 50117076 -134171586 - LTR16A1 LTR ERVL -2 455 117 2053 125 0 56 chr4 50117375 50117696 -134170966 - AluSx SINE Alu -9 303 1 250 206 20 118 chr4 50118032 50118134 -134170528 + MLT2E LTR ERVL 19 110 -518 1406 134 130 8 chr4 50118143 50118381 -134170281 - AluSx SINE Alu -45 267 1 481 165 13 0 chr4 50118912 50118991 -134169671 - U6 snRNA snRNA -1 106 27 287 316 13 0 chr4 50118996 50119075 -134169587 + MLT2E LTR ERVL 96 175 -453 449 55 0 0 chr4 50119092 50119147 -134169515 + Alu SINE Alu 2 56 -254 974 106 0 0 chr4 50119147 50119337 -134169325 + AluSp/q SINE Alu 154 343 0 1366 238 132 5 chr4 50119337 50119724 -134168938 + MLT2E LTR ERVL 193 628 0 1895 145 198 3 chr4 50119867 50120225 -134168437 - MSTA LTR MaLR 0 428 1 273 261 164 56 chr4 50120372 50120409 -134168253 - L1MC4a LINE L1 -1651 6157 6125 2068 147 0 0 chr4 50120409 50120708 -134167954 + AluSx SINE Alu 1 299 -13 273 261 164 56 chr4 50120708 50120865 -134167797 - L1MC4a LINE L1 -1683 6125 5942 1631 155 3 80 chr4 50121274 50121610 -134167052 - AluJb SINE Alu -2 310 1 1051 263 50 156 chr4 50121718 50121960 -134166702 + Charlie7 DNA MER1_type 167 433 -2179 2150 29 8 0 chr4 50121960 50122203 -134166459 + L1PA4 LINE L1 5910 6154 -1 1051 263 50 156 chr4 50122203 50122581 -134166081 + Charlie7 DNA MER1_type 433 721 -1891 22 56 0 0 chr4 50123156 50123192 -134165470 + AT_rich Low_complexity Low_complexity 1 36 0 2326 100 0 0 chr4 50123681 50123980 -134164682 - AluSc SINE Alu -10 299 1 382 263 26 35 chr4 50124255 50124369 -134164293 - MLT1I LTR MaLR -17 392 280 1564 169 83 7 chr4 50124393 50124695 -134163967 + MLT1D LTR MaLR 12 336 -169 340 203 0 0 chr4 50124695 50124754 -134163908 - MER115 DNA AcHobo -38 655 597 450 231 7 82 chr4 50125020 50125167 -134163495 - MER103 DNA DNA -9 157 22 186 43 0 0 chr4 50125370 50125393 -134163269 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 599 143 9 18 chr4 50125400 50125512 -134163150 - ORSL DNA AcHobo -16 259 149 802 144 23 38 chr4 50125513 50125526 -134163136 - FLAM_C SINE Alu -181 131 119 243 0 0 0 chr4 50125526 50125553 -134163109 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 802 144 23 38 chr4 50125553 50125671 -134162991 - FLAM_C SINE Alu -193 119 2 834 150 48 14 chr4 50125672 50125819 -134162843 - ORSL DNA AcHobo -120 155 4 308 347 20 7 chr4 50126137 50126284 -134162378 - L1MC4a LINE L1 -2097 5711 5563 296 319 96 0 chr4 50127727 50127862 -134160800 - L2 LINE L2 -4 3309 3162 835 263 101 29 chr4 50128038 50128456 -134160206 - LTR16A LTR ERVL 0 450 12 350 308 33 33 chr4 50128512 50128694 -134159968 - MER5A DNA MER1_type -4 185 4 433 187 155 91 chr4 50128699 50128886 -134159776 + MLT1E2 LTR MaLR 1 199 -425 686 177 5 19 chr4 50128886 50129100 -134159562 + CT-rich Low_complexity Low_complexity 1 211 0 236 147 0 0 chr4 50129100 50129134 -134159528 + (TCCC)n Simple_repeat Simple_repeat 4 37 0 877 150 0 8 chr4 50129134 50129267 -134159395 - FLAM_C SINE Alu 0 133 2 1657 235 97 2 chr4 50129267 50129688 -134158974 + MLT1E2 LTR MaLR 164 624 -2 189 290 16 0 chr4 50129839 50129901 -134158761 + MIR SINE MIR 157 219 -43 866 101 21 0 chr4 50130034 50130374 -134158288 + (TA)n Simple_repeat Simple_repeat 1 347 0 812 212 7 7 chr4 50130378 50130529 -134158133 - FRAM SINE Alu -15 151 1 690 242 59 33 chr4 50130733 50131258 -134157404 - LTR50 LTR ERVL 0 684 1 29 47 0 0 chr4 50131870 50131913 -134156749 + AT_rich Low_complexity Low_complexity 1 43 0 2458 61 3 0 chr4 50131914 50132207 -134156455 - AluY SINE Alu -16 295 2 2221 184 35 26 chr4 50133202 50133248 -134155414 + MER65C LTR ERV1 1 45 -416 2394 133 41 6 chr4 50133248 50133610 -134155052 - THE1C LTR MaLR 0 375 1 2221 184 35 26 chr4 50133610 50134020 -134154642 + MER65C LTR ERV1 45 461 0 778 149 122 140 chr4 50135113 50135335 -134153327 - MER20 DNA MER1_type 0 219 2 278 314 50 58 chr4 50136485 50136743 -134151919 - L2 LINE L2 -189 3083 2828 215 333 47 53 chr4 50136789 50136939 -134151723 - L2 LINE L2 -481 2833 2685 455 203 38 0 chr4 50137193 50137272 -134151390 + FRAM/FAM SINE Alu 1 81 -95 24 53 0 0 chr4 50137288 50137326 -134151336 + AT_rich Low_complexity Low_complexity 1 38 0 226 239 127 0 chr4 50137411 50137482 -134151180 - MER113 DNA MER1_type? -441 80 1 2707 111 0 48 chr4 50137730 50138126 -134150536 - MER51B LTR ERV1 0 377 1 23 33 0 0 chr4 50138412 50138442 -134150220 + AT_rich Low_complexity Low_complexity 1 30 0 520 194 186 52 chr4 50138491 50138739 -134149923 - L1ME4a LINE L1 -118 6003 5723 1641 174 0 63 chr4 50139051 50139384 -134149278 + AluJb SINE Alu 1 312 0 23 54 0 0 chr4 50139533 50139570 -134149092 + AT_rich Low_complexity Low_complexity 1 37 0 321 217 72 12 chr4 50139760 50139843 -134148819 - L1ME4a LINE L1 -542 5579 5492 1094 155 187 68 chr4 50140122 50140432 -134148230 - L1MB7 LINE L1 -5 6179 5833 198 191 0 0 chr4 50140602 50140644 -134148018 + CT-rich Low_complexity Low_complexity 2 43 0 1397 227 85 87 chr4 50140710 50141265 -134147397 - MER41C LTR ERV1 0 554 1 441 0 0 0 chr4 50141344 50141393 -134147269 + (CA)n Simple_repeat Simple_repeat 2 50 0 597 162 39 7 chr4 50141572 50141726 -134146936 + CT-rich Low_complexity Low_complexity 2 160 0 1754 156 40 0 chr4 50141731 50142006 -134146656 - AluSx SINE Alu -26 286 1 227 320 80 16 chr4 50142336 50142461 -134146201 - L2 LINE L2 -205 3067 2935 2081 121 13 20 chr4 50142718 50143024 -134145638 + AluSq SINE Alu 1 304 -9 25 31 0 0 chr4 50143137 50143169 -134145493 + AT_rich Low_complexity Low_complexity 1 32 0 303 339 0 18 chr4 50143212 50143321 -134145341 - L2 LINE L2 -44 3269 3163 4267 95 2 26 chr4 50143542 50144110 -134144552 + MER41A LTR ERV1 1 554 0 198 352 0 0 chr4 50144602 50144656 -134144006 + L2 LINE L2 3217 3270 -2 319 328 70 16 chr4 50144674 50144802 -134143860 - MIR SINE MIR -108 154 20 270 299 204 47 chr4 50144974 50145249 -134143413 - L2 LINE L2 -559 2755 2525 216 0 0 0 chr4 50145249 50145273 -134143389 + (GGGAA)n Simple_repeat Simple_repeat 5 28 0 270 299 204 47 chr4 50145273 50145907 -134142755 - L2 LINE L2 -789 2525 1703 781 227 43 0 chr4 50146181 50146344 -134142318 + MIR SINE MIR 5 174 -88 1671 84 5 0 chr4 50146349 50146563 -134142099 - AluSp SINE Alu -11 302 88 277 79 0 0 chr4 50146563 50146601 -134142061 - AluSp SINE Alu -270 38 1 4603 142 56 42 chr4 50147379 50147422 -134141240 - MER4D LTR ERV1 0 872 831 2242 182 42 121 chr4 50147422 50148086 -134140576 - LTR9 LTR ERV1 0 612 1 4603 142 56 42 chr4 50148086 50148824 -134139838 - MER4D LTR ERV1 -41 831 108 1596 171 53 0 chr4 50148824 50149105 -134139557 - AluSg SINE Alu -14 296 1 4603 142 56 42 chr4 50149105 50149215 -134139447 - MER4D LTR ERV1 -764 108 1 3781 209 82 13 chr4 50149608 50149896 -134138766 - MER69 DNA AcHobo 0 2526 2259 2011 105 10 24 chr4 50149896 50150190 -134138472 - AluSx SINE Alu -22 290 1 3781 209 82 13 chr4 50150190 50150803 -134137859 - MER69 DNA AcHobo -267 2259 1690 1594 182 34 7 chr4 50150803 50151099 -134137563 + AluJo SINE Alu 5 308 -4 225 0 0 0 chr4 50151109 50151134 -134137528 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 3781 209 82 13 chr4 50151134 50151221 -134137441 - MER69 DNA AcHobo -844 1682 1457 1011 222 10 0 chr4 50151217 50151415 -134137247 - MER69 DNA AcHobo -945 281 82 * 187 367 93 13 chr4 50151633 50151783 -134136879 + MIR3 SINE MIR 26 187 -21 2952 136 37 50 chr4 50151787 50152399 -134136263 + MER4B LTR ERV1 1 779 0 215 301 0 65 chr4 50155041 50155134 -134133528 + L2 LINE L2 3226 3312 -1 233 351 110 0 chr4 50155483 50155637 -134133025 + L2 LINE L2 3096 3266 -6 480 230 40 16 chr4 50156084 50156210 -134132452 - L1MB8 LINE L1 -68 6110 5982 25 0 0 0 chr4 50156318 50156343 -134132319 + AT_rich Low_complexity Low_complexity 1 25 0 847 176 0 0 chr4 50156343 50156479 -134132183 - AluJo SINE Alu -176 136 1 239 231 15 15 chr4 50156482 50156547 -134132115 - MLT1K LTR MaLR -10 578 514 1718 180 97 112 chr4 50156553 50157081 -134131581 + MLT2B1 LTR ERVL 1 520 0 1498 199 76 3 chr4 50157201 50157492 -134131170 - AluJb SINE Alu 0 312 1 455 118 0 100 chr4 50157493 50157554 -134131108 - L1MA7 LINE L1 -1 6290 6243 2112 148 3 0 chr4 50157554 50157865 -134130797 - AluSx SINE Alu 0 312 1 455 118 0 100 chr4 50157865 50157913 -134130749 - L1MA7 LINE L1 -48 6243 6192 1405 163 0 119 chr4 50158087 50158220 -134130442 + AluJo SINE Alu 1 148 -155 2008 114 75 36 chr4 50158220 50158581 -134130081 + THE1C LTR MaLR 1 375 0 1405 163 0 119 chr4 50158581 50158788 -134129874 + AluJo SINE Alu 148 303 0 1173 306 22 8 chr4 50159119 50159475 -134129187 + MLT1J LTR MaLR 135 495 -16 1573 219 133 73 chr4 50159551 50159921 -134128741 + HAL1 LINE L1 1621 1967 -540 189 74 0 0 chr4 50159921 50159948 -134128714 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1573 219 133 73 chr4 50159948 50160334 -134128328 + HAL1 LINE L1 1967 2423 -84 242 155 0 103 chr4 50160626 50160684 -134127978 - L2 LINE L2 0 3272 3221 1928 140 0 31 chr4 50160712 50161033 -134127629 + AluSx SINE Alu 1 311 -1 341 247 67 0 chr4 50161223 50161312 -134127350 - MIR SINE MIR -121 141 47 701 264 23 5 chr4 50161802 50162018 -134126644 + LTR16B LTR ERVL 233 452 -12 276 234 56 37 chr4 50162152 50162259 -134126403 + LTR67 LTR ERVL 326 434 -123 277 254 16 16 chr4 50162260 50162323 -134126339 - MIR SINE MIR -180 82 20 275 268 195 44 chr4 50162766 50162971 -134125691 - MLT1J2 LTR MaLR -156 294 59 2199 117 3 0 chr4 50163164 50163464 -134125198 - AluSg SINE Alu -9 301 1 1927 135 18 7 chr4 50163464 50163745 -134124917 - AluSx SINE Alu -13 299 16 241 195 26 163 chr4 50163999 50164096 -134124566 + L1ME LINE L1 5734 5794 -327 1457 172 114 0 chr4 50164096 50164358 -134124304 + AluJo SINE Alu 1 292 -20 241 195 26 163 chr4 50164358 50164450 -134124212 + L1ME LINE L1 5794 5897 -224 755 138 17 0 chr4 50164460 50164576 -134124086 + AluJb SINE Alu 195 312 0 347 277 79 0 chr4 50164975 50165076 -134123586 + MLT1I LTR MaLR 231 339 -70 524 81 0 27 chr4 50165092 50165166 -134123496 + AluSc SINE Alu 226 297 -12 1576 179 45 14 chr4 50165363 50165653 -134123009 + AluJo SINE Alu 1 299 -13 378 0 0 0 chr4 50165735 50165777 -134122885 + (T)n Simple_repeat Simple_repeat 1 42 0 2104 139 0 0 chr4 50165884 50166186 -134122476 - AluSx SINE Alu -10 302 1 931 147 0 0 chr4 50166218 50166361 -134122301 - L1MA5 LINE L1 0 6300 6158 603 93 0 0 chr4 50166513 50166588 -134122074 + AluSc SINE Alu 223 297 -12 1956 124 0 0 chr4 50166828 50167085 -134121577 + AluSx SINE Alu 1 257 -55 1783 92 92 0 chr4 50167680 50167962 -134120700 + AluSq SINE Alu 12 316 0 482 240 10 10 chr4 50167993 50168097 -134120565 + MLT1J2 LTR MaLR 1 104 -346 2181 169 64 32 chr4 50168446 50168913 -134119749 - L1MB8 LINE L1 -6 6172 5691 1804 184 19 69 chr4 50168926 50168956 -134119706 - L1MB7 LINE L1 -29 6155 6125 2049 125 3 16 chr4 50168956 50169269 -134119393 - AluSx SINE Alu -1 311 3 1804 184 19 69 chr4 50169269 50169661 -134119001 - L1MB7 LINE L1 -59 6125 5754 5706 63 1 6 chr4 50170186 50170903 -134117759 + L1PA7 LINE L1 5418 6131 -23 1757 206 24 12 chr4 50170914 50171332 -134117330 - L1MB7 LINE L1 -941 5205 4783 2226 109 0 0 chr4 50171377 50171680 -134116982 + AluSg SINE Alu 1 303 -7 234 274 171 0 chr4 50173648 50173765 -134114897 - MIR SINE MIR -8 254 118 483 244 35 150 chr4 50173795 50174082 -134114580 + MIR SINE MIR 9 262 0 181 302 38 0 chr4 50174083 50174136 -134114526 - MIR SINE MIR -109 99 45 358 270 112 28 chr4 50174329 50174507 -134114155 - LTR33 LTR ERVL -2 519 327 260 225 11 67 chr4 50174522 50174611 -134114051 + L1MC/D LINE L1 5620 5703 -2105 847 263 85 24 chr4 50175431 50175866 -134112796 + L1MC4a LINE L1 5200 5664 -779 757 171 31 16 chr4 50175966 50176095 -134112567 - FLAM_C SINE Alu -11 132 2 4221 145 40 26 chr4 50176971 50177690 -134110972 + L1MB7 LINE L1 5454 6182 -2 825 241 29 65 chr4 50180021 50180131 -134108531 + MIR SINE MIR 15 128 -134 2241 96 0 23 chr4 50180131 50180434 -134108228 - AluSq SINE Alu -17 296 1 825 241 29 65 chr4 50180434 50180568 -134108094 + MIR SINE MIR 128 250 -12 188 325 147 64 chr4 50181906 50182546 -134106116 + L2 LINE L2 2285 2977 -337 297 0 0 0 chr4 50182671 50182704 -134105958 + (CA)n Simple_repeat Simple_repeat 2 34 0 345 213 12 12 chr4 50183348 50183428 -134105234 - MER103 DNA DNA -10 156 77 949 180 0 44 chr4 50183548 50183731 -134104931 - AluJo SINE Alu -137 175 1 613 193 69 21 chr4 50183735 50183880 -134104782 + L2 LINE L2 3151 3302 -11 548 269 63 36 chr4 50184026 50184214 -134104448 + MIR SINE MIR 50 241 -21 325 190 8 91 chr4 50185248 50185265 -134103397 - L1MA4A LINE L1 -5 6298 6282 363 217 36 43 chr4 50185265 50185319 -134103343 - L1PB4 LINE L1 0 6156 6103 4461 100 35 0 chr4 50185319 50185918 -134102744 - L1PA13 LINE L1 -19 6144 5525 363 217 36 43 chr4 50185918 50186001 -134102661 - L1PB4 LINE L1 -53 6103 6020 261 316 26 9 chr4 50187792 50187906 -134100756 + L1MC4a LINE L1 5859 5974 -1834 230 114 45 0 chr4 50188251 50188295 -134100367 + L1M LINE L1 5383 5428 -693 398 273 145 32 chr4 50188651 50188962 -134099700 + L1ME4a LINE L1 5774 6119 -2 220 209 0 0 chr4 50189418 50189461 -134099201 - L2 LINE L2 -6 3266 3224 525 294 47 18 chr4 50189820 50189990 -134098672 + MIR3 SINE MIR 13 187 -21 1625 148 59 11 chr4 50190739 50191009 -134097653 - AluJo SINE Alu -24 288 6 21 0 0 0 chr4 50191220 50191241 -134097421 + AT_rich Low_complexity Low_complexity 1 21 0 376 171 0 0 chr4 50191532 50191602 -134097060 - L1PB4 LINE L1 -2 6154 6085 1490 162 72 0 chr4 50191702 50191967 -134096695 - AluJo SINE Alu -5 307 24 250 280 67 0 chr4 50193516 50193591 -134095071 - L1MC5 LINE L1 -50 7911 7832 37690 92 8 10 chr4 50193626 50199771 -134088891 - L1PA6 LINE L1 -6 6148 14 1613 180 22 41 chr4 50200320 50200637 -134088025 + AluJb SINE Alu 1 311 -1 2236 187 5 3 chr4 50200870 50201260 -134087402 - L1MC1 LINE L1 -17 6316 5926 1011 254 105 55 chr4 50201502 50202292 -134086370 - L1MEd LINE L1 -4813 1497 634 32 0 0 0 chr4 50203340 50203372 -134085290 + AT_rich Low_complexity Low_complexity 1 32 0 2377 134 28 100 chr4 50203755 50203987 -134084675 - MSTA LTR MaLR 0 428 181 2007 92 34 24 chr4 50203987 50204280 -134084382 - AluSc SINE Alu -12 297 2 2377 134 28 100 chr4 50204280 50204364 -134084298 - MSTA LTR MaLR -247 181 93 207 0 0 0 chr4 50204364 50204387 -134084275 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 2377 134 28 100 chr4 50204387 50204530 -134084132 - MSTA LTR MaLR -335 93 1 673 290 147 12 chr4 50205205 50205682 -134082980 - L2 LINE L2 0 3313 2766 849 86 22 79 chr4 50205712 50205728 -134082934 - L1PB1 LINE L1 -1 6150 6135 2045 133 0 13 chr4 50205728 50206029 -134082633 - AluSx SINE Alu -15 297 1 849 86 22 79 chr4 50206029 50206151 -134082511 - L1PB1 LINE L1 -16 6135 6020 15192 152 54 9 chr4 50206165 50206534 -134082128 - L1PB1 LINE L1 -4 6863 6512 297 0 0 0 chr4 50206534 50206567 -134082095 + (CA)n Simple_repeat Simple_repeat 2 34 0 15192 152 54 9 chr4 50206567 50209523 -134079139 - L1PB1 LINE L1 -355 6512 3689 2219 116 0 7 chr4 50209523 50209824 -134078838 - AluSp SINE Alu -12 301 3 15192 152 54 9 chr4 50209824 50212449 -134076213 - L1PB1 LINE L1 -3178 3689 636 1215 160 0 0 chr4 50212451 50212651 -134076011 - L1PB1 LINE L1 -6663 200 1 3583 95 6 4 chr4 50212658 50213151 -134075511 - L1PB2 LINE L1 -116 6035 5542 1053 305 52 12 chr4 50213157 50213560 -134075102 - L2 LINE L2 -540 2774 2356 945 89 0 22 chr4 50213696 50213831 -134074831 - L1MA1 LINE L1 -1 6301 6170 1925 93 38 7 chr4 50213704 50213993 -134074669 - L1MA1 LINE L1 -6 6296 5999 437 275 37 25 chr4 50214332 50214530 -134074132 - L1ME3A LINE L1 -257 5905 5706 4225 186 25 52 chr4 50215251 50216247 -134072415 + LTR5 LTR ERVK 1 969 0 994 281 242 16 chr4 50217313 50218268 -134070394 - L2 LINE L2 -34 3279 2126 307 265 129 47 chr4 50219104 50219274 -134069388 - MIR SINE MIR -32 230 47 624 280 107 33 chr4 50220801 50221044 -134067618 + MIR SINE MIR 2 262 0 543 280 136 14 chr4 50222278 50222492 -134066170 - LTR33 LTR ERVL -276 245 6 1349 233 81 40 chr4 50222783 50223277 -134065385 + LTR33A LTR ERVL 1 514 -9 1912 156 7 3 chr4 50223438 50223733 -134064929 + AluSx SINE Alu 1 296 -16 714 243 98 27 chr4 50224428 50224785 -134063877 - MLT1G1 LTR MaLR -5 590 116 369 247 11 0 chr4 50224814 50224907 -134063755 - MLT1G1 LTR MaLR -501 94 1 2317 84 0 7 chr4 50224926 50225276 -134063386 + AluY SINE Alu 1 311 0 215 708 0 0 chr4 50225456 50225603 -134063059 + (TA)n Simple_repeat Simple_repeat 1 147 0 318 258 0 41 chr4 50225605 50225702 -134062960 - L1MC4 LINE L1 -1336 6706 6614 9264 32 0 3 chr4 50226000 50227895 -134060767 - L1PA4 LINE L1 -3 6152 4259 626 286 42 46 chr4 50228025 50228284 -134060378 - MLT1J LTR MaLR -249 262 5 508 222 117 44 chr4 50228298 50228609 -134060053 - MLT1G1 LTR MaLR -36 559 131 499 303 35 86 chr4 50228609 50229065 -134059597 - L2 LINE L2 -852 2462 2030 455 206 120 28 chr4 50229078 50229279 -134059383 - MLT1B LTR MaLR 0 549 322 621 215 41 35 chr4 50229332 50229504 -134059158 + MIR SINE MIR 67 239 -23 191 88 29 0 chr4 50229984 50230018 -134058644 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 32 26 0 0 chr4 50230086 50230125 -134058537 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr4 50230317 50230345 -134058317 + AT_rich Low_complexity Low_complexity 1 28 0 194 337 0 24 chr4 50230522 50230605 -134058057 - L2 LINE L2 -4 3268 3188 259 260 0 65 chr4 50230815 50230892 -134057770 + L2 LINE L2 3242 3313 0 228 377 19 9 chr4 50231413 50231519 -134057143 + MIR SINE MIR 4 110 -152 1796 142 30 82 chr4 50231667 50231987 -134056675 + MER7A DNA MER2_type 2 337 -2701 1631 131 79 21 chr4 50231987 50232316 -134056346 - L1MA6 LINE L1 0 6300 5953 213 39 0 0 chr4 50232318 50232344 -134056318 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 311 70 0 0 chr4 50232344 50232387 -134056275 - L1PA3 LINE L1 -10 6145 6103 1796 142 30 82 chr4 50232387 50232428 -134056234 + MER7A DNA MER2_type 336 346 0 300 53 0 0 chr4 50232565 50232603 -134056059 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 768 297 70 31 chr4 50232603 50233048 -134055614 - L2 LINE L2 -13 3300 2839 669 290 89 50 chr4 50233535 50234062 -134054600 - L2 LINE L2 -7 3306 2755 279 191 6 49 chr4 50234535 50234697 -134053965 + (TA)n Simple_repeat Simple_repeat 2 156 0 1213 210 33 57 chr4 50234712 50235078 -134053584 - MLT1B LTR MaLR -19 371 15 1252 291 138 23 chr4 50235607 50235786 -134052876 + L2 LINE L2 2564 2721 -592 300 53 0 0 chr4 50235786 50235824 -134052838 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1252 291 138 23 chr4 50235824 50236324 -134052338 + L2 LINE L2 2721 3313 0 315 85 0 0 chr4 50237330 50237377 -134051285 + (CAT)n Simple_repeat Simple_repeat 1 47 0 565 271 102 0 chr4 50237391 50237568 -134051094 - MIR SINE MIR -4 258 64 742 235 6 12 chr4 50237613 50237779 -134050883 + MER5B DNA MER1_type 7 171 -7 2197 117 0 0 chr4 50237842 50238133 -134050529 - AluSx SINE Alu -21 291 1 694 265 84 14 chr4 50238485 50238700 -134049962 + MIR SINE MIR 14 243 -19 9485 155 18 11 chr4 50239071 50239957 -134048705 - L1MA8 LINE L1 -164 7546 6668 1275 168 35 0 chr4 50239957 50240183 -134048479 + MER46A DNA MER2_type 2 235 -1 9485 155 18 11 chr4 50240183 50241836 -134046826 - L1MA8 LINE L1 -1042 6668 4991 2136 125 0 23 chr4 50241837 50242142 -134046520 - AluSq SINE Alu -4 309 12 2916 3 0 0 chr4 50242171 50242512 -134046150 - L1HS LINE L1 0 6155 5815 2610 227 45 11 chr4 50242503 50243349 -134045313 - L1MA8 LINE L1 -2571 4994 4120 * 1726 99 25 79 chr4 50243353 50243720 -134044942 - MER4A LTR ERV1 0 664 262 672 73 0 10 chr4 50243722 50243818 -134044844 - MER4A LTR ERV1 -567 97 3 2444 254 62 23 chr4 50243825 50245923 -134042739 - L1MA8 LINE L1 -3451 4114 2012 2310 242 126 50 chr4 50245926 50247079 -134041583 - L1MA8 LINE L1 -5786 1703 464 217 254 18 0 chr4 50247129 50247184 -134041478 + (TATG)n Simple_repeat Simple_repeat 4 59 0 459 266 95 23 chr4 50247188 50247451 -134041211 - L1ME4a LINE L1 -225 5896 5615 25 0 0 0 chr4 50248042 50248067 -134040595 + AT_rich Low_complexity Low_complexity 1 25 0 453 246 9 0 chr4 50248450 50248560 -134040102 - AluJb SINE Alu -2 310 200 1615 193 14 3 chr4 50248568 50248863 -134039799 - AluJo SINE Alu -14 298 1 2454 121 3 0 chr4 50249431 50249796 -134038866 - THE1C LTR MaLR -2 373 8 1616 219 180 6 chr4 50249849 50250332 -134038330 + MLT1F1 LTR MaLR 1 567 0 211 200 77 46 chr4 50250377 50250442 -134038220 - L2 LINE L2 -11 3261 3195 1805 259 62 16 chr4 50251325 50252147 -134036515 + L1M4 LINE L1 2596 3455 -2691 1149 233 49 3 chr4 50252202 50252489 -134036173 + MLT2F LTR ERVL 362 661 -2 1159 234 82 33 chr4 50252489 50252646 -134036016 + L1M4 LINE L1 3499 3647 -2499 2040 199 58 54 chr4 50252646 50253127 -134035535 + MLT2B1 LTR ERVL 1 486 -34 216 0 0 0 chr4 50253127 50253151 -134035511 + (CA)n Simple_repeat Simple_repeat 2 25 0 2040 199 58 54 chr4 50253151 50253187 -134035475 + MLT2B1 LTR ERVL 486 520 0 1159 234 82 33 chr4 50253187 50253454 -134035208 + L1M4 LINE L1 3647 3949 -2197 1306 54 0 6 chr4 50253454 50253620 -134035042 - L1PA4 LINE L1 -5 6150 5986 814 53 0 0 chr4 50253620 50253733 -134034929 + L1PA4 LINE L1 5861 5973 -182 750 289 62 3 chr4 50253757 50254061 -134034601 + L1M4 LINE L1 3951 4272 -1874 30555 57 4 5 chr4 50254101 50258192 -134030470 + L1P LINE L1 7 4093 -2053 15022 62 62 3 chr4 50258180 50260272 -134028390 + L1P LINE L1 1 2215 -3931 * 821 38 0 0 chr4 50260273 50260379 -134028283 - L1P LINE L1 -1480 4666 4561 16515 43 3 1 chr4 50260803 50262971 -134025691 + L1P LINE L1 2202 4374 -1772 1759 172 13 19 chr4 50463039 50463347 -133825315 + AluJo SINE Alu 1 306 -6 838 171 85 28 chr4 50464466 50464642 -133824020 - MER5A DNA MER1_type -2 187 2 1951 185 36 11 chr4 50464774 50465130 -133823532 - MLT1A1 LTR MaLR 0 365 1 850 156 0 0 chr4 50466106 50466283 -133822379 - ALR/Alpha Satellite centromeric 0 177 1 427 247 0 0 chr4 50466284 50466373 -133822289 - HERVI LTR ERV1 -4926 2859 2771 1154 167 7 3 chr4 50466380 50476579 -133812083 - ALR/Alpha Satellite centromeric 0 10236 1 1126 157 10 3 chr4 50476724 50478554 -133810108 - ALR/Alpha Satellite centromeric 0 1843 1 7323 253 17 16 chr4 50478555 50480280 -133808382 - HERVI LTR ERV1 -4926 2859 1132 1310 278 111 45 chr4 50480603 50481226 -133807436 - HERVI LTR ERV1 -6647 1138 475 1202 155 4 0 chr4 50481238 50484042 -133804620 + ALR/Alpha Satellite centromeric 1 2814 -75 5059 179 42 3 chr4 50484315 50485359 -133803303 - L1MB5 LINE L1 0 6174 5197 500 296 163 42 chr4 50485924 50486164 -133802498 - MLT1K LTR MaLR -164 424 156 3354 213 33 25 chr4 50486166 50486219 -133802443 - L1M4 LINE L1 -548 5636 5585 16493 176 13 8 chr4 50486219 50490026 -133798636 - L1PA13 LINE L1 -2 6161 2346 3354 213 33 25 chr4 50490026 50490952 -133797710 - L1M4 LINE L1 -599 5585 4650 455 200 12 12 chr4 50491057 50491142 -133797520 + L2 LINE L2 3229 3313 0 351 290 68 68 chr4 50491196 50491417 -133797245 + MLT1K LTR MaLR 22 242 -346 268 380 36 26 chr4 50491652 50491844 -133796818 - LTR67 LTR ERVL -9 548 355 1907 171 97 3 chr4 50492276 50492668 -133795994 - MLT1D LTR MaLR -1 504 76 248 361 89 0 chr4 50492686 50492844 -133795818 - MIR SINE MIR -61 201 30 200 238 0 0 chr4 50493823 50493865 -133794797 - L2 LINE L2 -15 3298 3257 316 264 100 9 chr4 50494163 50494273 -133794389 + L2 LINE L2 2931 3050 -222 687 280 54 6 chr4 50494368 50494536 -133794126 - MER91A DNA MER1_type -16 180 5 418 221 8 41 chr4 50494630 50494752 -133793910 + L2 LINE L2 3195 3312 -1 190 321 37 12 chr4 50495111 50495192 -133793470 + MIR3 SINE MIR 113 195 -13 420 20 0 0 chr4 50495446 50495495 -133793167 + (TC)n Simple_repeat Simple_repeat 2 50 0 264 122 0 0 chr4 50495495 50495536 -133793126 + (T)n Simple_repeat Simple_repeat 1 41 0 851 269 35 19 chr4 50496581 50496838 -133791824 + MIR SINE MIR 2 262 0 2401 34 47 3 chr4 50498793 50499091 -133789571 + AluY SINE Alu 1 311 0 1673 141 24 4 chr4 50499301 50499556 -133789106 + AluSx SINE Alu 1 260 -52 1637 170 3 7 chr4 50499783 50500089 -133788573 - AluJb SINE Alu 0 305 1 2202 102 3 0 chr4 50500200 50500485 -133788177 + AluSx SINE Alu 1 286 -26 894 125 36 0 chr4 50500506 50500674 -133787988 + GA-rich Low_complexity Low_complexity 3 176 0 524 269 126 31 chr4 50500695 50500918 -133787744 + MIR SINE MIR 18 261 -1 504 346 13 6 chr4 50501862 50502021 -133786641 + MIR3 SINE MIR 37 196 -12 211 207 52 17 chr4 50502392 50502450 -133786212 - L2 LINE L2 -7 3265 3206 191 336 55 81 chr4 50502762 50502997 -133785665 + L3 LINE CR1 1342 1570 -7 22 35 0 0 chr4 50503020 50503049 -133785613 + AT_rich Low_complexity Low_complexity 1 29 0 227 210 65 0 chr4 50503347 50503409 -133785253 + G-rich Low_complexity Low_complexity 1 66 0 344 302 156 72 chr4 50504291 50505043 -133783619 - L1M2 LINE L1 -5640 1209 395 206 217 0 0 chr4 50505566 50505612 -133783050 + C-rich Low_complexity Low_complexity 2 47 0 200 270 11 45 chr4 50506128 50506217 -133782445 + G-rich Low_complexity Low_complexity 4 89 0 811 256 0 24 chr4 50508206 50508417 -133780245 - L1MEd LINE L1 -5913 206 1 840 277 117 16 chr4 50508708 50509083 -133779579 - MLT1L LTR MaLR 0 615 203 743 199 15 0 chr4 50509666 50509797 -133778865 - FLAM_A SINE Alu 0 133 1 241 284 156 28 chr4 50509951 50510060 -133778602 + L2 LINE L2 3142 3264 -8 432 191 0 86 chr4 50511409 50511514 -133777148 + LTR67 LTR ERVL 454 549 -8 252 86 0 0 chr4 50511878 50511913 -133776749 + (TG)n Simple_repeat Simple_repeat 2 36 0 398 191 269 21 chr4 50511982 50512123 -133776539 - L1ME1 LINE L1 -6 6160 5985 307 287 9 46 chr4 50512485 50512593 -133776069 + MIR SINE MIR 37 140 -122 796 266 185 63 chr4 50512611 50513055 -133775607 - L2 LINE L2 -5 3308 2811 949 231 7 11 chr4 50513777 50513990 -133774672 - MIR SINE MIR -44 218 8 569 278 48 29 chr4 50514711 50514920 -133773742 - MIR SINE MIR -3 259 47 487 248 76 14 chr4 50515651 50515796 -133772866 - MER5B DNA MER1_type -13 165 12 547 221 44 15 chr4 50515932 50516068 -133772594 - MIR SINE MIR -1 261 122 266 343 76 30 chr4 50516589 50516787 -133771875 + L2 LINE L2 1729 1935 -1379 1231 168 45 0 chr4 50516849 50517069 -133771593 + MER46A DNA MER2_type 1 230 -6 359 243 48 10 chr4 50517080 50517183 -133771479 - L2 LINE L2 -64 3249 3143 1143 127 127 31 chr4 50517185 50517445 -133771217 + L1MB8 LINE L1 5890 6174 -4 455 289 192 23 chr4 50517445 50517771 -133770891 - L2 LINE L2 -165 3148 2765 24 32 0 0 chr4 50518495 50518526 -133770136 + AT_rich Low_complexity Low_complexity 1 31 0 232 294 44 0 chr4 50518658 50518726 -133769936 + MIR SINE MIR 30 100 -108 1530 277 45 16 chr4 50519904 50520172 -133768490 - L2 LINE L2 -1 3312 3053 679 100 36 0 chr4 50520172 50520282 -133768380 - L1MA7 LINE L1 0 6291 6178 1530 277 45 16 chr4 50520282 50520545 -133768117 - L2 LINE L2 -260 3053 2764 385 300 109 65 chr4 50520561 50520783 -133767879 - L1M4 LINE L1 -1164 4982 4738 986 171 81 19 chr4 50520783 50520994 -133767668 + MER58A DNA MER1_type 1 224 0 385 300 109 65 chr4 50520994 50521111 -133767551 - L1M4 LINE L1 -1408 4738 4628 234 0 0 0 chr4 50521683 50521709 -133766953 + (A)n Simple_repeat Simple_repeat 1 26 0 2273 137 76 13 chr4 50522503 50522897 -133765765 - MSTA LTR MaLR -9 419 1 323 221 35 72 chr4 50523069 50523256 -133765406 - MIR SINE MIR -14 248 29 22 0 0 0 chr4 50525163 50525185 -133763477 + AT_rich Low_complexity Low_complexity 1 22 0 303 28 0 0 chr4 50525339 50525375 -133763287 + (ATG)n Simple_repeat Simple_repeat 1 36 0 325 328 51 60 chr4 50525389 50525624 -133763038 - L1ME2 LINE L1 -252 5912 5680 6885 164 152 32 chr4 50525795 50527360 -133761302 - MER52A LTR ERV1 -2 1753 1 2251 108 0 16 chr4 50527800 50528107 -133760555 + AluSg SINE Alu 1 302 -8 25 0 0 0 chr4 50528124 50528149 -133760513 + AT_rich Low_complexity Low_complexity 1 25 0 24 53 0 0 chr4 50529263 50529301 -133759361 + AT_rich Low_complexity Low_complexity 1 38 0 232 179 0 0 chr4 50529510 50529549 -133759113 - L2 LINE L2 -3 3310 3272 192 273 0 0 chr4 50529585 50529629 -133759033 - L2 LINE L2 -44 3269 3226 189 244 11 67 chr4 50529858 50529948 -133758714 + MIR SINE MIR 50 134 -74 567 254 146 35 chr4 50531281 50531568 -133757094 + L2 LINE L2 1738 2056 -1258 237 298 99 16 chr4 50531652 50531773 -133756889 + MIR SINE MIR 11 141 -121 189 317 168 18 chr4 50531910 50532077 -133756585 - MIR SINE MIR -39 223 32 651 221 197 19 chr4 50532390 50532598 -133756064 + MIR SINE MIR 18 262 0 740 224 165 6 chr4 50534433 50534791 -133753871 - L1MB7 LINE L1 -30 6154 5788 3317 26 5 12 chr4 50535127 50535545 -133753117 + L1PA4 LINE L1 5741 6155 0 1099 229 17 4 chr4 50535553 50535789 -133752873 - MER8 DNA MER2_type 0 239 1 2079 112 3 3 chr4 50538288 50538583 -133750079 + AluSx SINE Alu 1 295 -17 2165 113 7 0 chr4 50539812 50540104 -133748558 + AluY SINE Alu 1 294 -17 225 65 0 0 chr4 50540624 50540655 -133748007 + (A)n Simple_repeat Simple_repeat 1 31 0 799 168 0 0 chr4 50540849 50540974 -133747688 + FLAM_C SINE Alu 1 125 -8 2184 81 3 3 chr4 50541449 50541759 -133746903 + AluY SINE Alu 1 310 0 461 271 26 13 chr4 50542481 50542632 -133746030 + L1M4 LINE L1 4072 4224 -1922 213 185 0 0 chr4 50542938 50543003 -133745659 + (TA)n Simple_repeat Simple_repeat 2 66 0 923 303 112 67 chr4 50544008 50545038 -133743624 - L2 LINE L2 -463 2851 1776 21 0 0 0 chr4 50545671 50545692 -133742970 + AT_rich Low_complexity Low_complexity 1 21 0 2085 92 10 14 chr4 50546071 50546363 -133742299 - AluSc SINE Alu -18 291 1 186 71 0 0 chr4 50546856 50546884 -133741778 + (T)n Simple_repeat Simple_repeat 1 28 0 2016 91 77 18 chr4 50547422 50547707 -133740955 + AluSx SINE Alu 1 302 -10 2084 124 7 13 chr4 50547788 50548094 -133740568 + AluSx SINE Alu 1 304 -8 371 203 87 22 chr4 50548124 50548262 -133740400 - MER104 DNA Tc2 -10 170 24 851 277 70 30 chr4 50550133 50550562 -133738100 - L1MC4a LINE L1 -1905 5903 5458 1059 169 68 37 chr4 50551099 50551395 -133737267 - MER33 DNA MER1_type -28 296 1 298 265 72 51 chr4 50551986 50552161 -133736501 - MIR SINE MIR -64 198 16 1971 112 18 4 chr4 50552376 50552687 -133735975 - AluSx SINE Alu 0 315 1 185 221 59 44 chr4 50552927 50552995 -133735667 - L2 LINE L2 -193 3079 3011 192 301 75 54 chr4 50553375 50553468 -133735194 - L2 LINE L2 -2 3311 3217 1537 203 49 23 chr4 50553789 50554139 -133734523 - MLT1A1 LTR MaLR 0 365 7 252 0 0 0 chr4 50554525 50554553 -133734109 + (A)n Simple_repeat Simple_repeat 1 28 0 28 0 0 0 chr4 50555524 50555552 -133733110 + AT_rich Low_complexity Low_complexity 1 28 0 512 367 28 14 chr4 50555629 50556126 -133732536 + L2 LINE L2 2549 3055 -217 2147 221 181 20 chr4 50556617 50557012 -133731650 + L1MC4 LINE L1 6813 7143 -899 1876 199 104 7 chr4 50557012 50557435 -133731227 + MER88 LTR ERVL 1 464 0 2147 221 181 20 chr4 50557435 50558089 -133730573 + L1MC4 LINE L1 7143 8031 -11 23 0 0 0 chr4 50559091 50559114 -133729548 + AT_rich Low_complexity Low_complexity 1 23 0 1180 173 59 55 chr4 50559416 50559636 -133729026 + AluJo SINE Alu 1 221 -91 219 337 119 0 chr4 50560258 50560359 -133728303 - MIR SINE MIR -65 143 31 4712 253 96 15 chr4 50560921 50563748 -133724914 - L1MEc LINE L1 -3161 3054 36 288 263 13 0 chr4 50564168 50564244 -133724418 - MIR3 SINE MIR -23 185 109 22 0 0 0 chr4 50564454 50564476 -133724186 + AT_rich Low_complexity Low_complexity 1 22 0 218 368 23 0 chr4 50565343 50565430 -133723232 - L3b LINE CR1 -173 1410 1322 586 250 186 15 chr4 50565813 50566017 -133722645 + MIR SINE MIR 14 252 -10 354 231 51 68 chr4 50571844 50571961 -133716701 - MIR SINE MIR -14 248 134 300 111 0 0 chr4 50572430 50572475 -133716187 + (TTA)n Simple_repeat Simple_repeat 2 46 0 599 297 105 39 chr4 50575915 50576305 -133712357 - L1MC4 LINE L1 -30 8012 7597 240 180 0 60 chr4 50576532 50576582 -133712080 + L2 LINE L2 3178 3224 -89 330 287 32 0 chr4 50578959 50579053 -133709609 - MIR SINE MIR -132 130 34 1634 217 165 23 chr4 50579148 50579664 -133708998 - L1ME1 LINE L1 -136 6030 5442 372 325 29 53 chr4 50580154 50580360 -133708302 - MIR SINE MIR -41 221 21 1563 221 86 68 chr4 50580865 50581376 -133707286 - MLT2B1 LTR ERVL 0 520 1 13347 149 58 17 chr4 50581376 50581677 -133706985 - ERVL-B1 LTR ERVL -7 5757 5470 1702 182 45 28 chr4 50581677 50582035 -133706627 + MLT1A1 LTR MaLR 1 364 -1 13347 149 58 17 chr4 50582035 50584078 -133704584 - ERVL-B1 LTR ERVL -294 5470 3316 2480 200 22 0 chr4 50584080 50584529 -133704133 - ERVL-B1 LTR ERVL -2762 3002 2544 2093 140 72 35 chr4 50584571 50585108 -133703554 - MLT2A2 LTR ERVL 0 554 1 364 102 0 0 chr4 50585111 50585160 -133703502 - ERVL-B1 LTR ERVL -4604 1160 1112 815 93 0 0 chr4 50585503 50585610 -133703052 - ERVL-B1 LTR ERVL -3224 2540 2434 * 8789 210 31 24 chr4 50585605 50585817 -133702845 - ERVL-B1 LTR ERVL -3606 2048 1839 2194 103 13 7 chr4 50585817 50586118 -133702544 - AluSg SINE Alu -7 303 1 8789 210 31 24 chr4 50586118 50587005 -133701657 - ERVL-B1 LTR ERVL -3815 1839 960 2262 116 0 0 chr4 50587005 50587306 -133701356 - AluSx SINE Alu -11 301 1 8789 210 31 24 chr4 50587306 50588344 -133700318 - ERVL-B1 LTR ERVL -4694 960 1 302 95 0 95 chr4 50588344 50588407 -133700255 - MLT2B1 LTR ERVL 0 520 464 355 158 35 9 chr4 50588409 50588523 -133700139 + (TA)n Simple_repeat Simple_repeat 1 117 0 25 31 0 0 chr4 50588543 50588575 -133700087 + AT_rich Low_complexity Low_complexity 1 32 0 241 232 14 14 chr4 50588695 50588764 -133699898 + (TA)n Simple_repeat Simple_repeat 2 70 0 2126 218 54 19 chr4 50588794 50589258 -133699404 - MLT2B1 LTR ERVL -40 480 1 517 208 100 0 chr4 50589262 50589382 -133699280 - MLT1B LTR MaLR -256 134 3 1041 258 48 16 chr4 50590387 50590701 -133697961 + L1ME3A LINE L1 5842 6165 -5 658 205 31 45 chr4 50591104 50591320 -133697342 - MIR SINE MIR -67 195 11 1754 145 10 38 chr4 50592496 50592785 -133695877 + AluJo SINE Alu 2 282 -30 546 43 0 0 chr4 50592788 50592857 -133695805 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 868 124 8 0 chr4 50592864 50592985 -133695677 + AluSq/x SINE Alu 1 122 -190 309 315 0 0 chr4 50592985 50593074 -133695588 - L1MC4 LINE L1 -1340 6702 6614 459 152 0 0 chr4 50593074 50593153 -133695509 + (CA)n Simple_repeat Simple_repeat 2 80 0 974 158 0 12 chr4 50593154 50593318 -133695344 + AluSg/x SINE Alu 138 299 -13 808 283 84 19 chr4 50593584 50593906 -133694756 + L1MCc LINE L1 88 430 -5993 537 275 135 0 chr4 50593914 50594107 -133694555 - LTR40c LTR ERVL -226 239 21 42789 42 21 2 chr4 50594197 50600212 -133688450 - L1PA3 LINE L1 0 6155 22 397 195 11 11 chr4 50601952 50602039 -133686623 - MER102a DNA MER1_type -2 328 242 674 176 21 117 chr4 50602161 50602349 -133686313 - MIR SINE MIR -70 192 23 346 307 63 8 chr4 50602612 50602739 -133685923 - MARNA DNA Mariner -54 532 399 * 421 284 101 7 chr4 50602636 50602784 -133685878 + MARNA DNA Mariner 85 246 -340 2835 159 16 5 chr4 50602936 50603504 -133685158 + MER41B LTR ERV1 1 635 0 1654 187 53 36 chr4 50603792 50604151 -133684511 - MLT1A1 LTR MaLR 0 365 1 722 160 8 0 chr4 50604151 50604276 -133684386 - MLT1A1-int LTR MaLR 0 1735 1610 2302 157 72 5 chr4 50604289 50604690 -133683972 + MSTA LTR MaLR 1 428 0 8445 185 39 5 chr4 50604704 50606259 -133682403 + MSTA-int LTR MaLR 45 1651 0 1758 173 104 6 chr4 50606259 50606624 -133682038 + MSTA LTR MaLR 1 401 -27 38092 70 48 1 chr4 50606624 50612481 -133676181 - L1PA5 LINE L1 -6 6148 11 1851 289 60 18 chr4 50612534 50613219 -133675443 - MLT1A1-int LTR MaLR -138 1513 797 2216 139 92 8 chr4 50613234 50613616 -133675046 + MSTA LTR MaLR 1 414 -14 1800 199 21 12 chr4 50613646 50613983 -133674679 - MLT1A1-int LTR MaLR -945 790 451 3056 175 58 12 chr4 50614084 50614674 -133673988 - LTR24C LTR ERV1 0 635 19 424 165 10 78 chr4 50614693 50614796 -133673866 - FLAM_C SINE Alu -21 122 27 1833 183 39 74 chr4 50614810 50615185 -133673477 - MLT1A1-int LTR MaLR -1284 451 93 2114 101 11 0 chr4 50615185 50615463 -133673199 + AluY SINE Alu 1 281 -30 1833 183 39 74 chr4 50615463 50615545 -133673117 - MLT1A1-int LTR MaLR -1642 93 10 1560 174 106 30 chr4 50615548 50615739 -133672923 - MLT1A1 LTR MaLR 0 365 190 2885 202 25 20 chr4 50615739 50616293 -133672369 - MER41D LTR ERV1 0 557 1 1560 174 106 30 chr4 50616293 50616440 -133672222 - MLT1A1 LTR MaLR -175 190 1 433 276 32 16 chr4 50616489 50616612 -133672050 - MIR SINE MIR -28 234 110 236 231 77 15 chr4 50616612 50616677 -133671985 + MER63A DNA MER1_type 24 92 0 541 212 183 15 chr4 50616711 50616956 -133671706 + MER54A LTR ERVL 113 554 -264 455 282 19 0 chr4 50617194 50617297 -133671365 + MER63A DNA MER1_type 99 203 -7 430 288 76 15 chr4 50618013 50618145 -133670517 + MIR3 SINE MIR 46 185 -23 681 233 7 0 chr4 50618248 50618398 -133670264 - MIR SINE MIR -1 261 111 532 194 166 33 chr4 50619036 50619247 -133669415 + LTR40c LTR ERVL 1 239 -226 243 0 0 0 chr4 50619542 50619569 -133669093 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2143 131 7 0 chr4 50620262 50620568 -133668094 + AluY SINE Alu 1 308 -3 758 336 126 16 chr4 50620725 50621270 -133667392 - L2 LINE L2 0 3313 2710 2396 146 22 19 chr4 50621294 50621704 -133666958 - MER65A LTR ERV1 -34 411 1 1680 156 6 48 chr4 50621914 50622229 -133666433 - AluJo SINE Alu 0 312 11 614 160 84 15 chr4 50623645 50623776 -133664886 + MER53 DNA DNA 1 140 -49 4728 37 7 2 chr4 50623776 50624359 -133664303 - L1P2 LINE L1 -348 5807 5222 23 0 0 0 chr4 50624359 50624382 -133664280 + AT_rich Low_complexity Low_complexity 1 23 0 1005 122 11 11 chr4 50625176 50625201 -133663461 + (TTCC)n Simple_repeat Simple_repeat 1 205 0 1005 122 11 11 chr4 50625201 50625381 -133663281 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1932 162 7 0 chr4 50625469 50625766 -133662896 - AluJb SINE Alu -13 299 1 591 126 0 0 chr4 50625916 50626003 -133662659 + L1PA8 LINE L1 6085 6171 -1 19183 141 7 8 chr4 50626360 50628108 -133660554 - L1PA10 LINE L1 -6 7600 5852 2038 153 0 6 chr4 50628108 50628422 -133660240 - AluSx SINE Alu 0 312 1 19183 141 7 8 chr4 50628422 50630486 -133658176 - L1PA10 LINE L1 -1754 5852 3790 846 40 0 20 chr4 50630486 50630620 -133658042 - L1PA3 LINE L1 0 6155 6048 2161 195 10 2 chr4 50630621 50631032 -133657630 - L1PA10 LINE L1 -3784 3800 3387 6260 57 6 0 chr4 50631133 50632001 -133656661 + L1P2 LINE L1 4603 5473 -681 8226 41 41 0 chr4 50632001 50633685 -133654977 + L1PA5 LINE L1 4427 6145 -9 34 0 0 0 chr4 50633707 50633741 -133654921 + AT_rich Low_complexity Low_complexity 1 34 0 1660 167 25 0 chr4 50633808 50634089 -133654573 - MLT2B1 LTR ERVL -232 288 1 251 306 37 28 chr4 50634089 50634197 -133654465 + L2 LINE L2 2644 2752 -562 300 111 63 48 chr4 50634230 50634293 -133654369 - LTR36 LTR ERV1 0 611 548 28878 80 1 0 chr4 50634394 50638150 -133650512 - L1P LINE L1 -2353 3793 34 1218 244 26 8 chr4 50638150 50638416 -133650246 + MLT2B1 LTR ERVL 250 520 0 612 296 64 72 chr4 50638509 50639009 -133649653 - L2 LINE L2 -774 2540 2045 1557 235 143 2 chr4 50639012 50639458 -133649204 + LTR33 LTR ERVL 1 509 -12 717 214 0 0 chr4 50640754 50640871 -133647791 + FLAM_C SINE Alu 2 118 -25 22 0 0 0 chr4 50640871 50640893 -133647769 + AT_rich Low_complexity Low_complexity 1 22 0 1372 173 4 37 chr4 50643914 50644185 -133644477 - AluJo SINE Alu -50 262 1 4500 237 23 65 chr4 50644780 50646869 -133641793 - L1PA10 LINE L1 -4185 3399 52 5708 181 77 36 chr4 50646871 50648381 -133640281 - L1MA8 LINE L1 -1 6290 4685 186 43 0 0 chr4 50648381 50648404 -133640258 + (TTA)n Simple_repeat Simple_repeat 2 24 0 5708 181 77 36 chr4 50648404 50648587 -133640075 - L1MA8 LINE L1 -1606 4685 4511 833 238 0 0 chr4 50648600 50648747 -133639915 - AluJo SINE Alu -33 279 133 872 211 39 22 chr4 50648826 50649038 -133639624 - MLT1H1 LTR MaLR -294 296 83 3838 142 12 40 chr4 50649038 50650047 -133638615 + L1MA5 LINE L1 4619 5594 -706 815 219 28 51 chr4 50650047 50650225 -133638437 + FAM SINE Alu 1 174 -1 3838 142 12 40 chr4 50650225 50650252 -133638410 + L1MA5 LINE L1 5594 5620 -680 1518 165 4 24 chr4 50650269 50650524 -133638138 + AluJo SINE Alu 1 250 -62 1662 158 83 20 chr4 50650537 50650886 -133637776 + L1MA5 LINE L1 5754 6124 -176 1253 124 21 0 chr4 50651268 50651461 -133637201 + L1MA5 LINE L1 6102 6298 -2 233 232 71 0 chr4 50651478 50651534 -133637128 - MLT1H1 LTR MaLR -452 103 44 456 240 118 34 chr4 50652224 50652428 -133636234 + L1MC4 LINE L1 6796 7016 -1026 366 61 0 0 chr4 50652590 50652639 -133636023 + (CA)n Simple_repeat Simple_repeat 2 50 0 300 297 134 66 chr4 50654691 50655041 -133633621 - L2 LINE L2 -1 3312 2939 941 120 27 60 chr4 50655062 50655236 -133633426 + LTR36 LTR ERV1 1 170 -441 446 72 159 0 chr4 50655236 50655305 -133633357 - MADE1 DNA Mariner 0 80 1 655 178 8 42 chr4 50656787 50656905 -133631757 - AluJo SINE Alu -178 134 21 189 175 88 70 chr4 50657275 50657332 -133631330 + L2 LINE L2 3195 3252 -20 2643 222 60 18 chr4 50658780 50659348 -133629314 + MLT1E LTR MaLR 1 592 -1 292 283 143 70 chr4 50659382 50659796 -133628866 - L2 LINE L2 -1 3312 2869 694 227 76 15 chr4 50659929 50660127 -133628535 - MIR SINE MIR -50 212 3 274 248 158 30 chr4 50660320 50660421 -133628241 - L2 LINE L2 0 3313 3200 1201 211 57 7 chr4 50660421 50660701 -133627961 + MER33 DNA MER1_type 31 324 0 485 277 108 28 chr4 50661773 50662099 -133626563 + L1MC4a LINE L1 5657 6004 -117 2205 110 3 19 chr4 50662370 50662680 -133625982 - AluSx SINE Alu -5 307 3 424 217 211 12 chr4 50663507 50663673 -133624989 + Charlie8 DNA MER1_type 43 241 -2176 708 130 4 6 chr4 50663727 50663990 -133624672 + AluSx SINE Alu 1 310 -2 310 223 126 10 chr4 50664275 50664378 -133624284 + Charlie8 DNA MER1_type 435 549 -1868 5238 16 0 0 chr4 50664516 50665102 -133623560 + L1PA3 LINE L1 5583 6168 0 280 0 0 0 chr4 50665071 50665137 -133623525 + (TAA)n Simple_repeat Simple_repeat 3 68 0 356 221 168 20 chr4 50665182 50665331 -133623331 - MIR SINE MIR -44 218 48 1921 155 3 23 chr4 50665557 50665860 -133622802 - AluJo SINE Alu -15 297 1 395 249 131 40 chr4 50666027 50666256 -133622406 + MLT1I LTR MaLR 19 304 -245 22 0 0 0 chr4 50666350 50666372 -133622290 + AT_rich Low_complexity Low_complexity 1 22 0 975 265 92 10 chr4 50666944 50667465 -133621197 + L1MDa LINE L1 1789 2390 -4331 1726 267 57 12 chr4 50667501 50668497 -133620165 + L1MDa LINE L1 3261 4324 -2216 443 155 223 0 chr4 50668549 50668652 -133620010 + L1ME1 LINE L1 5699 5824 -342 3193 118 62 15 chr4 50668706 50669239 -133619423 - L1PA16 LINE L1 -11 6155 5598 734 209 20 70 chr4 50669239 50669483 -133619179 + L1ME1 LINE L1 5815 6046 -120 314 261 19 116 chr4 50670033 50670240 -133618422 - MIR SINE MIR -6 256 70 2176 129 0 7 chr4 50670277 50670579 -133618083 + AluSq SINE Alu 1 300 -13 2249 92 7 0 chr4 50672346 50672649 -133616013 + AluSp SINE Alu 1 305 -8 211 290 29 65 chr4 50672779 50672917 -133615745 - MIR SINE MIR -11 251 119 27 29 0 0 chr4 50674407 50674441 -133614221 + AT_rich Low_complexity Low_complexity 1 34 0 200 362 64 37 chr4 50676897 50677115 -133611547 + L2 LINE L2 2594 2817 -497 2187 99 7 0 chr4 50677266 50677549 -133611113 - AluSp SINE Alu -28 285 1 180 0 0 0 chr4 50677751 50677771 -133610891 + (TCTA)n Simple_repeat Simple_repeat 3 22 0 21 71 0 0 chr4 50678316 50678358 -133610304 + AT_rich Low_complexity Low_complexity 1 42 0 2311 77 0 24 chr4 50679751 50680048 -133608614 + AluSc SINE Alu 1 290 -19 28 48 0 0 chr4 50680345 50680387 -133608275 + AT_rich Low_complexity Low_complexity 1 42 0 804 242 76 0 chr4 50681465 50681676 -133606986 + MIR SINE MIR 36 262 0 2444 72 3 0 chr4 50682921 50683226 -133605436 + AluY SINE Alu 1 306 -5 1971 258 97 19 chr4 50683443 50684460 -133604202 - L2 LINE L2 -1 3312 2196 2453 82 0 0 chr4 50684619 50684925 -133603737 - AluSg SINE Alu -4 306 1 44 46 0 0 chr4 50685766 50685831 -133602831 + AT_rich Low_complexity Low_complexity 1 65 0 553 263 101 61 chr4 50685959 50686286 -133602376 - L1ME4a LINE L1 0 6121 5782 226 282 115 14 chr4 50686587 50686704 -133601958 - MIR SINE MIR -67 141 13 2424 38 7 0 chr4 50686723 50687012 -133601650 + AluY SINE Alu 1 291 -20 23 0 0 0 chr4 50687849 50687872 -133600790 + AT_rich Low_complexity Low_complexity 1 23 0 2640 251 110 80 chr4 50688389 50689698 -133598964 - HAL1 LINE L1 0 2507 1238 258 32 0 0 chr4 50689698 50689729 -133598933 + (CCTA)n Simple_repeat Simple_repeat 1 31 0 2640 251 110 80 chr4 50689729 50689759 -133598903 - HAL1 LINE L1 -1269 1238 1210 303 28 0 0 chr4 50689759 50689795 -133598867 + (TG)n Simple_repeat Simple_repeat 1 36 0 2640 251 110 80 chr4 50689795 50690643 -133598019 - HAL1 LINE L1 -1297 1210 254 274 105 0 0 chr4 50691491 50691529 -133597133 - tRNA-Lys-AAG tRNA tRNA -37 39 2 28 0 0 0 chr4 50692293 50692321 -133596341 + AT_rich Low_complexity Low_complexity 1 28 0 1868 162 30 3 chr4 50692327 50692395 -133596267 - MER2 DNA MER2_type 0 345 280 2512 61 0 10 chr4 50692395 50692705 -133595957 + AluSg1 SINE Alu 1 307 -2 1868 162 30 3 chr4 50692705 50692970 -133595692 - MER2 DNA MER2_type -65 280 3 481 246 197 20 chr4 50693065 50693268 -133595394 + Charlie1 DNA MER1_type 1 239 -2522 * 757 142 14 7 chr4 50693252 50693393 -133595269 + Charlie1 DNA MER1_type 2620 2761 0 565 326 116 61 chr4 50694282 50695043 -133593619 - L2 LINE L2 -16 3256 2454 502 193 114 0 chr4 50695048 50695162 -133593500 - MER45A DNA AcHobo -1 177 51 226 204 0 20 chr4 50695249 50695298 -133593364 - L2 LINE L2 -954 2360 2313 225 259 0 35 chr4 50695860 50695918 -133592744 + (CATATA)n Simple_repeat Simple_repeat 5 60 0 423 266 113 100 chr4 50696209 50696405 -133592257 + L1M2 LINE L1 566 758 -6091 192 97 0 0 chr4 50696405 50696436 -133592226 + (CCCCG)n Simple_repeat Simple_repeat 2 32 0 423 266 113 100 chr4 50696436 50696871 -133591791 + L1M2 LINE L1 758 1380 -5469 265 324 122 75 chr4 50697731 50698009 -133590653 + L2 LINE L2 2934 3224 -48 290 278 119 16 chr4 50698364 50698490 -133590172 - MIR SINE MIR -115 147 9 343 245 21 0 chr4 50698623 50698717 -133589945 + MLT1C LTR MaLR 6 101 -366 517 171 0 38 chr4 50698717 50698814 -133589848 + MLT1A1 LTR MaLR 1 93 -281 548 214 30 0 chr4 50698814 50698945 -133589717 - MSTD LTR MaLR 0 396 262 518 200 9 0 chr4 50699000 50699110 -133589552 - MSTD LTR MaLR -283 113 3 1341 178 46 0 chr4 50699149 50699390 -133589272 + MLT1A1 LTR MaLR 114 365 0 841 223 165 6 chr4 50699390 50699685 -133588977 + MLT1C LTR MaLR 96 483 -22 228 306 82 10 chr4 50699685 50699783 -133588879 + L2 LINE L2 2322 2426 -888 266 198 109 79 chr4 50699817 50699918 -133588744 + L2 LINE L2 2686 2789 -525 232 366 45 18 chr4 50700132 50700244 -133588418 + L2 LINE L2 2945 3059 -213 2141 125 3 0 chr4 50702647 50702944 -133585718 + AluSp SINE Alu 1 298 -15 181 294 162 0 chr4 50703176 50703244 -133585418 - L2 LINE L2 -36 3236 3158 349 333 21 21 chr4 50703624 50703768 -133584894 - MIR3 SINE MIR -5 203 60 1878 148 30 14 chr4 50703950 50704247 -133584415 - AluSx SINE Alu -10 302 1 24 0 0 0 chr4 50704616 50704640 -133584022 + AT_rich Low_complexity Low_complexity 1 24 0 2227 116 48 20 chr4 50705345 50705699 -133582963 - THE1B LTR MaLR 0 364 1 9843 79 64 39 chr4 50705699 50705887 -133582775 - THE1B-int LTR MaLR 0 1580 1398 411 19 0 0 chr4 50705887 50705939 -133582723 + L1PA6 LINE L1 6102 6153 -1 9843 79 64 39 chr4 50705939 50706088 -133582574 - THE1B-int LTR MaLR -182 1398 1254 433 30 30 15 chr4 50706088 50706155 -133582507 + (TTTA)n Simple_repeat Simple_repeat 2 69 0 1869 122 69 0 chr4 50706159 50706421 -133582241 - AluSx SINE Alu -32 280 1 9843 79 64 39 chr4 50706421 50707602 -133581060 - THE1B-int LTR MaLR -328 1252 18 1793 143 116 6 chr4 50707617 50707945 -133580717 - THE1B LTR MaLR 0 364 1 294 29 0 0 chr4 50708533 50708568 -133580094 + (TA)n Simple_repeat Simple_repeat 1 35 0 470 330 30 25 chr4 50710793 50710996 -133577666 + MIR3 SINE MIR 4 207 -1 189 229 145 90 chr4 50711715 50711881 -133576781 + L2 LINE L2 2220 2394 -920 1285 256 143 25 chr4 50711913 50712272 -133576390 + L2 LINE L2 2484 2909 -404 917 180 111 5 chr4 50712272 50712461 -133576201 + MER3 DNA MER1_type 1 209 0 1285 256 143 25 chr4 50712461 50712576 -133576086 + L2 LINE L2 2909 3009 -304 3179 165 80 15 chr4 50712576 50713243 -133575419 - MER49 LTR ERV1 -37 886 177 284 243 130 17 chr4 50713663 50713840 -133574822 + MER112 DNA MER1_type 29 225 -35 470 242 145 8 chr4 50713842 50713966 -133574696 + MER5B DNA MER1_type 3 143 -35 476 272 143 27 chr4 50714514 50714738 -133573924 + MIR SINE MIR 8 257 -5 192 286 59 42 chr4 50714741 50714860 -133573802 + L2 LINE L2 2295 2415 -899 200 286 52 68 chr4 50715300 50715492 -133573170 + L2 LINE L2 3125 3313 0 237 286 13 39 chr4 50715720 50715797 -133572865 - L2 LINE L2 -4 3268 3194 223 288 65 42 chr4 50715853 50716001 -133572661 - MIR3 SINE MIR -42 166 7 499 255 96 43 chr4 50716030 50716218 -133572444 - MIR SINE MIR -43 219 22 435 291 117 28 chr4 50716730 50716909 -133571753 + L2 LINE L2 2867 3061 -252 1060 211 24 36 chr4 50716977 50717228 -133571434 + MIR SINE MIR 2 249 -13 245 250 0 42 chr4 50717292 50717364 -133571298 - L2 LINE L2 -45 3268 3200 251 290 62 69 chr4 50717709 50717854 -133570808 + L2 LINE L2 2923 3066 -206 1047 195 75 11 chr4 50718158 50718530 -133570132 - MLT1J2 LTR MaLR -21 426 1 963 17 17 0 chr4 50718881 50718999 -133569663 - L1PA4 LINE L1 0 6155 6036 1849 92 8 8 chr4 50719445 50719744 -133568918 + L1PA8 LINE L1 5894 6192 0 439 328 23 11 chr4 50719845 50720022 -133568640 + MIR SINE MIR 84 262 0 700 227 191 13 chr4 50720120 50720424 -133568238 - L1ME2 LINE L1 0 6164 5807 252 59 0 0 chr4 50720702 50720736 -133567926 + (GA)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr4 50721364 50721386 -133567276 + AT_rich Low_complexity Low_complexity 1 22 0 318 239 166 61 chr4 50721480 50721643 -133567019 - L1ME4a LINE L1 -2 6119 5940 259 221 177 32 chr4 50722277 50722399 -133566263 - L1MC4 LINE L1 0 8042 7891 189 0 0 0 chr4 50722399 50722420 -133566242 + (TA)n Simple_repeat Simple_repeat 2 22 0 259 221 177 32 chr4 50722420 50722455 -133566207 - L1MC4 LINE L1 -151 7891 7862 5885 120 16 20 chr4 50722501 50723789 -133564873 - L1PB2 LINE L1 -5 6146 4873 344 365 25 25 chr4 50724116 50724358 -133564304 + L2 LINE L2 2471 2715 -599 2455 85 0 0 chr4 50724358 50724665 -133563997 - AluY SINE Alu -4 307 1 344 365 25 25 chr4 50724665 50724707 -133563955 + L2 LINE L2 2714 2755 -559 4623 86 16 0 chr4 50724723 50725350 -133563312 - L1PA10 LINE L1 -11 6157 5521 4174 90 7 0 chr4 50725450 50726051 -133562611 - L1PA10 LINE L1 -287 5881 5277 591 286 36 99 chr4 50726056 50726606 -133562056 + L2 LINE L2 2751 3311 -2 297 296 83 0 chr4 50726990 50727098 -133561564 - L2 LINE L2 0 3313 3197 1885 171 0 17 chr4 50727544 50727842 -133560820 - AluJo SINE Alu -19 293 1 204 140 20 60 chr4 50728609 50728659 -133560003 - L3 LINE CR1 -579 998 951 36 0 0 0 chr4 50728698 50728734 -133559928 + AT_rich Low_complexity Low_complexity 1 36 0 386 295 162 21 chr4 50728902 50729143 -133559519 - L1ME4a LINE L1 -217 5904 5630 1630 37 0 0 chr4 50729178 50729368 -133559294 + L1PA3 LINE L1 5963 6152 -3 239 241 0 35 chr4 50730518 50730576 -133558086 + C-rich Low_complexity Low_complexity 2 57 0 2255 109 0 10 chr4 50731075 50731379 -133557283 - AluSx SINE Alu -11 301 1 276 203 17 0 chr4 50731863 50731922 -133556740 - MER63 DNA MER1_type -331 730 671 1013 171 46 46 chr4 50732188 50732405 -133556257 + AluJo SINE Alu 27 243 -69 3895 91 21 31 chr4 50732405 50733012 -133555650 - MER84-int LTR ERV1 -436 4518 3918 10408 129 25 10 chr4 50733549 50735222 -133553440 - MER84-int LTR ERV1 -2543 2411 714 1122 122 6 6 chr4 50735223 50735404 -133553258 - MER84 LTR ERVI -326 181 1 550 202 4 24 chr4 50735868 50736116 -133552546 + CT-rich Low_complexity Low_complexity 1 243 0 24 53 0 0 chr4 50736167 50736205 -133552457 + AT_rich Low_complexity Low_complexity 1 38 0 492 221 115 96 chr4 50736665 50736873 -133551789 + MER58C DNA MER1_type 4 215 0 217 255 0 0 chr4 50736959 50737006 -133551656 + L2 LINE L2 3262 3308 -5 867 308 8 0 chr4 50737807 50738060 -133550602 + MIR SINE MIR 6 260 -2 578 297 22 16 chr4 50738909 50739091 -133549571 + MER5A DNA MER1_type 7 189 0 865 298 38 8 chr4 50739268 50739506 -133549156 + MIR SINE MIR 8 252 -10 1589 307 155 19 chr4 50740005 50740921 -133547741 - L3 LINE CR1 -254 1323 283 22 0 0 0 chr4 50741449 50741471 -133547191 + AT_rich Low_complexity Low_complexity 1 22 0 1718 164 25 0 chr4 50742141 50742415 -133546247 + AluJo SINE Alu 1 281 -31 364 53 18 0 chr4 50742415 50742472 -133546190 - Alu SINE Alu -3 298 241 579 273 93 6 chr4 50742824 50742985 -133545677 + MIR SINE MIR 69 243 -19 26 30 0 0 chr4 50743315 50743348 -133545314 + AT_rich Low_complexity Low_complexity 1 33 0 213 178 0 0 chr4 50743464 50743509 -133545153 + (TA)n Simple_repeat Simple_repeat 1 45 0 953 281 91 11 chr4 50743599 50744158 -133544504 - L1MC4a LINE L1 -1890 5918 5315 1268 195 27 38 chr4 50744217 50744610 -133544052 + AluJb SINE Alu 51 440 0 26 0 0 0 chr4 50744731 50744757 -133543905 + AT_rich Low_complexity Low_complexity 1 26 0 28355 115 19 59 chr4 50746072 50752478 -133536184 - L1PA7 LINE L1 -8 6146 12 413 279 45 35 chr4 50752690 50752891 -133535771 - MIR3 SINE MIR -4 204 2 4086 143 68 21 chr4 50752977 50753723 -133534939 + LTR39 LTR ERV1 1 781 -2 408 20 0 0 chr4 50753766 50753815 -133534847 + (CA)n Simple_repeat Simple_repeat 2 50 0 2006 160 0 0 chr4 50754194 50754487 -133534175 + AluJb SINE Alu 1 293 -19 601 240 16 0 chr4 50754993 50755114 -133533548 + AluJo SINE Alu 45 167 -145 2092 124 14 0 chr4 50755943 50756234 -133532428 + AluSg SINE Alu 1 295 -15 1283 167 8 8 chr4 50756248 50756500 -133532162 + L1MB5 LINE L1 5672 5923 -251 5884 117 25 31 chr4 50756500 50757202 -133531460 - Tigger3b DNA MER2_type -1797 1231 536 1904 132 49 3 chr4 50757202 50757489 -133531173 + AluSx SINE Alu 1 300 -12 5884 117 25 31 chr4 50757489 50757859 -133530803 - Tigger3b DNA MER2_type -2492 536 165 1021 167 43 5 chr4 50757959 50758145 -133530517 - Tigger3b DNA MER2_type -1029 202 10 785 171 56 64 chr4 50758147 50758430 -133530232 + L1MB5 LINE L1 5921 6180 0 1936 102 0 0 chr4 50760057 50760301 -133528361 - AluSg SINE Alu -66 244 1 469 236 0 47 chr4 50760743 50760870 -133527792 - L2 LINE L2 0 3313 3193 730 193 0 7 chr4 50761843 50761978 -133526684 + AluJb SINE Alu 1 134 -178 1095 150 0 17 chr4 50762019 50762192 -133526470 + AluJb SINE Alu 131 300 -12 23 0 0 0 chr4 50762326 50762349 -133526313 + AT_rich Low_complexity Low_complexity 1 23 0 29696 106 13 12 chr4 50762527 50768926 -133519736 - L1PA7 LINE L1 -4 6465 10 2028 123 21 0 chr4 50769089 50769415 -133519247 + L1PA13 LINE L1 5824 6156 -7 22 0 0 0 chr4 50770513 50770535 -133518127 + AT_rich Low_complexity Low_complexity 1 22 0 389 285 36 6 chr4 50772535 50772645 -133516017 + MIR3 SINE MIR 44 154 -54 1454 204 100 25 chr4 50772660 50773131 -133515531 - MER20B DNA MER1_type -7 776 271 1877 121 66 38 chr4 50773595 50773960 -133514702 - THE1C LTR MaLR 0 375 1 268 313 36 0 chr4 50774333 50774416 -133514246 - L2 LINE L2 0 3272 3187 386 198 11 66 chr4 50775682 50775773 -133512889 - L2 LINE L2 0 3272 3187 449 294 9 25 chr4 50776914 50777121 -133511541 - MIR SINE MIR -2 260 6 349 259 161 7 chr4 50777152 50777295 -133511367 + MER103 DNA DNA 1 165 -1 2363 113 26 31 chr4 50777780 50778197 -133510465 + L1MA4A LINE L1 5881 6295 -8 236 267 167 44 chr4 50778511 50778601 -133510061 + MER5A DNA MER1_type 43 143 -46 279 179 0 0 chr4 50780047 50780114 -133508548 + A-rich Low_complexity Low_complexity 1 67 0 33 25 0 0 chr4 50780568 50780608 -133508054 + AT_rich Low_complexity Low_complexity 1 40 0 216 0 0 0 chr4 50780888 50780912 -133507750 + (CA)n Simple_repeat Simple_repeat 1 24 0 295 382 0 0 chr4 50781713 50781836 -133506826 + MIR SINE MIR 21 143 -119 2637 132 11 25 chr4 50784264 50784704 -133503958 + Tigger2a DNA MER2_type 1 434 0 2270 129 3 0 chr4 50785335 50785644 -133503018 - AluSq SINE Alu -3 310 1 401 238 38 124 chr4 50786079 50786223 -133502439 - MER102a DNA MER1_type -1100 317 195 1863 157 29 37 chr4 50786223 50786600 -133502062 + MLT1A2 LTR MaLR 1 374 0 401 238 38 124 chr4 50786600 50786665 -133501997 - MER102a DNA MER1_type -1222 195 126 496 228 65 99 chr4 50786750 50786899 -133501763 + MIR SINE MIR 10 150 -112 340 20 0 39 chr4 50786899 50786950 -133501712 + (TA)n Simple_repeat Simple_repeat 2 50 0 496 228 65 99 chr4 50786950 50787032 -133501630 + MIR SINE MIR 150 233 -29 1835 168 19 16 chr4 50787039 50787414 -133501248 + L1MC2 LINE L1 5877 6252 -92 1059 231 98 89 chr4 50787462 50788004 -133500658 - MLT1H LTR MaLR 0 549 3 399 215 70 38 chr4 50789262 50789420 -133499242 - MER103 DNA DNA -1 165 3 1889 181 7 0 chr4 50790601 50790911 -133497751 - AluJb SINE Alu 0 312 1 22 0 0 0 chr4 50791450 50791472 -133497190 + AT_rich Low_complexity Low_complexity 1 22 0 1966 159 0 25 chr4 50791904 50792224 -133496438 - AluJb SINE Alu 0 312 1 21 36 0 0 chr4 50792245 50792273 -133496389 + AT_rich Low_complexity Low_complexity 1 28 0 799 152 0 20 chr4 50792278 50792429 -133496233 - L1PA13 LINE L1 -5 6158 6011 697 285 34 10 chr4 50793355 50793562 -133495100 + MIR SINE MIR 1 212 -50 669 212 91 12 chr4 50793641 50793806 -133494856 - MER45A DNA AcHobo 0 178 1 1142 183 15 0 chr4 50793920 50794122 -133494540 + AluJb SINE Alu 1 205 -107 198 0 0 0 chr4 50794138 50794160 -133494502 + (A)n Simple_repeat Simple_repeat 1 22 0 29192 57 5 0 chr4 50795262 50799140 -133489522 - L1P LINE L1 -2242 3904 7 2794 243 27 25 chr4 50799173 50799511 -133489151 - L1M4 LINE L1 -1923 4223 3887 1964 141 10 20 chr4 50799511 50799815 -133488847 - AluSx SINE Alu -11 301 1 2794 243 27 25 chr4 50799815 50800470 -133488192 - L1M4 LINE L1 -2259 3887 3228 2657 235 18 13 chr4 50800502 50801188 -133487474 - L1MEc LINE L1 -5673 723 35 228 221 118 0 chr4 50801208 50801276 -133487386 - MIR SINE MIR -8 254 179 546 323 7 19 chr4 50801336 50801491 -133487171 - MIR SINE MIR -102 160 8 1578 136 0 85 chr4 50801722 50802043 -133486619 - AluSx SINE Alu 0 309 14 251 160 0 20 chr4 50803460 50803510 -133485152 - LTR67 LTR ERVL -16 541 493 370 265 114 48 chr4 50803612 50803778 -133484884 - MER115 DNA AcHobo -516 177 1 236 333 19 28 chr4 50804414 50804522 -133484140 + MLT1K LTR MaLR 111 217 -371 207 156 22 44 chr4 50804898 50804943 -133483719 + MIR SINE MIR 107 150 -112 204 344 10 31 chr4 50805090 50805186 -133483476 + L2 LINE L2 3173 3266 -6 1061 267 108 50 chr4 50806892 50806935 -133481727 + MLT1J LTR MaLR 1 40 -471 1920 124 71 0 chr4 50806935 50807218 -133481444 - AluSx SINE Alu -7 305 3 1061 267 108 50 chr4 50807218 50807657 -133481005 + MLT1J LTR MaLR 40 511 0 348 305 50 21 chr4 50807671 50807812 -133480850 - L1M4 LINE L1 -1519 4627 4483 236 280 0 86 chr4 50808362 50808455 -133480207 + MIR SINE MIR 78 162 -100 2443 163 55 0 chr4 50808544 50808948 -133479714 + MSTB LTR MaLR 1 426 0 1622 130 3 27 chr4 50808948 50809240 -133479422 + MSTB-int LTR MaLR 1 285 -1366 274 239 235 42 chr4 50809249 50809607 -133479055 - MLT1K LTR MaLR -17 571 183 1543 275 24 2 chr4 50809783 50810205 -133478457 + LTR16C LTR ERVL 58 488 -3 23 33 0 0 chr4 50810671 50810701 -133477961 + AT_rich Low_complexity Low_complexity 1 30 0 28 79 0 0 chr4 50811569 50811632 -133477030 + AT_rich Low_complexity Low_complexity 1 63 0 5866 111 2 16 chr4 50812541 50813609 -133475053 + L1PA13 LINE L1 5106 6160 -3 3046 189 23 40 chr4 50813958 50814030 -133474632 + L1MB3 LINE L1 4572 4644 -1536 2526 48 3 0 chr4 50814030 50814377 -133474285 + L1PA5 LINE L1 5825 6173 0 3046 189 23 40 chr4 50814377 50815056 -133473606 + L1MB3 LINE L1 4644 5318 -862 2153 97 42 0 chr4 50815056 50815345 -133473317 + AluY SINE Alu 1 301 -10 3046 189 23 40 chr4 50815345 50815500 -133473162 + L1MB3 LINE L1 5318 5474 -706 5578 112 27 3 chr4 50815509 50817255 -133471407 + L1PA13 LINE L1 4382 6159 -4 3397 163 26 40 chr4 50817290 50817624 -133471038 + L1MB3 LINE L1 5479 5816 -367 850 165 0 0 chr4 50817624 50817757 -133470905 + FLAM_A SINE Alu 1 133 0 3397 163 26 40 chr4 50817757 50818126 -133470536 + L1MB3 LINE L1 5816 6172 -11 1634 84 23 27 chr4 50818386 50818434 -133470228 - L1MA2 LINE L1 0 6304 6257 2523 125 18 10 chr4 50818434 50818834 -133469828 - MER57A LTR ERV1 0 403 1 1634 84 23 27 chr4 50818834 50819048 -133469614 - L1MA2 LINE L1 -47 6257 6043 443 317 35 0 chr4 50820017 50820162 -133468500 + AluJb SINE Alu 141 290 -22 388 167 104 0 chr4 50821062 50821158 -133467504 + L1MA4A LINE L1 6015 6120 -183 493 131 10 40 chr4 50821159 50821258 -133467404 + L1MA4A LINE L1 6183 6278 -25 24 0 0 0 chr4 50821264 50821288 -133467374 + AT_rich Low_complexity Low_complexity 1 24 0 307 262 20 27 chr4 50821547 50821696 -133466966 + L1PA14 LINE L1 5969 6116 -45 4978 91 6 38 chr4 50821914 50822710 -133465952 + LTR17 LTR ERV1 10 780 0 1823 106 43 0 chr4 50822710 50822992 -133465670 + MER4-int LTR ERV1 707 1000 -4015 2723 112 201 1 chr4 50823092 50823360 -133465302 + MER4-int LTR ERV1 32 245 -6353 183 42 0 0 chr4 50823360 50823384 -133465278 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2723 112 201 1 chr4 50823384 50823756 -133464906 + MER4-int LTR ERV1 245 831 -5767 504 199 50 50 chr4 50823853 50824034 -133464628 + MER4-int LTR ERV1 852 1032 -5566 518 227 55 14 chr4 50824050 50824270 -133464392 + MER4E LTR ERV1 22 250 -529 6221 145 9 36 chr4 50824533 50825905 -133462757 + L1P3 LINE L1 1058 2415 -4046 960 195 71 3 chr4 50826081 50826363 -133462299 + Charlie4a DNA MER1_type 149 449 -59 5060 86 5 14 chr4 50826363 50827135 -133461527 + L1P LINE L1 13 777 -5369 905 78 78 0 chr4 50828207 50828335 -133460327 + MER85 DNA T2_type 2 139 0 6302 44 3 3 chr4 50828778 50829942 -133458720 + L1PA2 LINE L1 4838 6000 -155 541 326 22 11 chr4 50830351 50830529 -133458133 + L2 LINE L2 2683 2862 -452 198 147 0 0 chr4 50830650 50830684 -133457978 + L2 LINE L2 3035 3068 -245 1841 150 29 0 chr4 50830867 50831147 -133457515 + AluSx SINE Alu 11 298 -14 371 292 76 60 chr4 50831193 50831378 -133457284 + L2 LINE L2 2959 3146 -167 10264 36 4 0 chr4 50831875 50833330 -133455332 + L1P2 LINE L1 4089 5547 -607 813 218 73 17 chr4 50833432 50833611 -133455051 + MIR SINE MIR 64 252 -10 880 240 122 43 chr4 50834065 50834554 -133454108 + LTR24B LTR ERV1 1 515 -61 700 183 16 0 chr4 50834949 50835075 -133453587 + AluJb SINE Alu 180 307 -5 258 299 0 13 chr4 50835075 50835152 -133453510 + Charlie4a DNA MER1_type 432 507 -1 785 181 34 0 chr4 50835643 50835792 -133452870 + MER20 DNA MER1_type 59 212 -7 407 296 50 0 chr4 50835959 50836118 -133452544 - MLT1K LTR MaLR -285 303 137 188 333 14 14 chr4 50838033 50838105 -133450557 - L3 LINE CR1 -160 1417 1346 258 32 0 0 chr4 50838209 50838240 -133450422 + (TG)n Simple_repeat Simple_repeat 2 32 0 217 333 19 9 chr4 50838354 50838459 -133450203 - L3 LINE CR1 -228 1349 1244 818 260 45 16 chr4 50838766 50839008 -133449654 + MIR SINE MIR 14 262 0 1137 209 20 0 chr4 50839287 50839541 -133449121 - L1 LINE L1 -3573 2573 2315 38972 67 6 4 chr4 50839664 50845810 -133442852 - L1PA5 LINE L1 -2 6152 2 304 138 46 0 chr4 50845812 50845877 -133442785 - L1 LINE L1 -3821 2325 2258 797 186 0 0 chr4 50845892 50846021 -133442641 - FLAM_C SINE Alu -3 130 2 385 334 70 83 chr4 50847861 50848163 -133440499 + L2 LINE L2 2974 3271 -1 461 256 188 0 chr4 50848263 50848396 -133440266 - MIR3 SINE MIR -21 187 30 404 168 92 50 chr4 50848979 50849098 -133439564 + Charlie8 DNA MER1_type 39 162 -2255 783 205 83 10 chr4 50849118 50849323 -133439339 - MLT1C LTR MaLR -3 464 245 27 29 0 0 chr4 50849507 50849541 -133439121 + AT_rich Low_complexity Low_complexity 1 34 0 24 67 0 0 chr4 50849731 50849776 -133438886 + AT_rich Low_complexity Low_complexity 1 45 0 2486 144 30 21 chr4 50850075 50850505 -133438157 - Tigger2a DNA MER2_type 0 434 1 26 50 0 0 chr4 50850670 50850710 -133437952 + AT_rich Low_complexity Low_complexity 1 40 0 24 53 0 0 chr4 50850724 50850762 -133437900 + AT_rich Low_complexity Low_complexity 1 38 0 948 203 88 98 chr4 50850987 50851387 -133437275 - MSTD LTR MaLR 0 396 1 232 309 97 0 chr4 50851530 50851633 -133437029 - MIR SINE MIR -95 113 54 313 333 31 0 chr4 50851738 50851834 -133436828 - MIR SINE MIR -134 128 30 6670 208 42 22 chr4 50851877 50853743 -133434919 + L1MB7 LINE L1 16 1918 -4728 9178 171 59 32 chr4 50853743 50855106 -133433556 + L1MC3 LINE L1 5556 6998 -787 2039 128 57 23 chr4 50855106 50855458 -133433204 + THE1B LTR MaLR 1 364 0 9178 171 59 32 chr4 50855458 50856246 -133432416 + L1MC3 LINE L1 6998 7764 -21 965 265 36 63 chr4 50856290 50856988 -133431674 + L1MB7 LINE L1 2069 2707 -3939 447 196 0 0 chr4 50856985 50857077 -133431585 + L1MB7 LINE L1 5422 5513 -1131 * 3908 170 54 25 chr4 50857081 50857294 -133431368 + L1MB7 LINE L1 5554 5759 -923 222 37 0 0 chr4 50857294 50857321 -133431341 + (CAA)n Simple_repeat Simple_repeat 1 27 0 3908 170 54 25 chr4 50857321 50858057 -133430605 + L1MB7 LINE L1 5759 6548 -134 2172 115 0 0 chr4 50858057 50858352 -133430310 - AluSg SINE Alu -15 295 1 3908 170 54 25 chr4 50858352 50858421 -133430241 + L1MB7 LINE L1 6548 6613 -69 496 137 0 150 chr4 50858417 50858489 -133430173 + L1MB7 LINE L1 6545 6584 -98 * 1606 195 7 23 chr4 50858489 50858792 -133429870 + AluJb SINE Alu 1 298 -14 496 137 0 150 chr4 50858792 50858872 -133429790 + L1MB7 LINE L1 6584 6674 -8 23 0 0 0 chr4 50859535 50859558 -133429104 + AT_rich Low_complexity Low_complexity 1 23 0 313 324 20 24 chr4 50860514 50860677 -133427985 - MIR SINE MIR -62 146 34 704 220 17 57 chr4 50860702 50860879 -133427783 + MER5B DNA MER1_type 6 175 -3 346 244 77 0 chr4 50860979 50861057 -133427605 - L2 LINE L2 -5 3308 3225 804 303 72 42 chr4 50861408 50861883 -133426779 - LTR33 LTR ERVL 0 521 33 308 274 71 9 chr4 50862409 50862522 -133426140 - L1ME4a LINE L1 -24 6097 5978 651 302 153 0 chr4 50862586 50862788 -133425874 - MIR SINE MIR -8 254 22 1842 95 8 0 chr4 50862969 50863233 -133425429 - L1PA15 LINE L1 -1 6164 5899 251 333 0 0 chr4 50863444 50863504 -133425158 - L2 LINE L2 -25 3247 3188 832 176 44 6 chr4 50863934 50864116 -133424546 - MER5A DNA MER1_type 0 189 1 468 272 119 8 chr4 50864510 50864753 -133423909 - L1ME4a LINE L1 -249 5872 5603 27 0 0 0 chr4 50865609 50865636 -133423026 + AT_rich Low_complexity Low_complexity 1 27 0 23 78 0 0 chr4 50866368 50866419 -133422243 + AT_rich Low_complexity Low_complexity 1 51 0 622 265 64 56 chr4 50867704 50867953 -133420709 - MIR SINE MIR 0 262 12 2215 124 0 3 chr4 50868147 50868453 -133420209 - AluSx SINE Alu -7 305 1 1522 178 40 27 chr4 50869180 50869478 -133419184 - AluJo SINE Alu -10 302 1 263 307 135 57 chr4 50869478 50869953 -133418709 + L2 LINE L2 2164 2675 -639 473 294 87 11 chr4 50870267 50870451 -133418211 - MIR SINE MIR -50 212 15 579 310 69 80 chr4 50871021 50871398 -133417264 - L2 LINE L2 0 3272 2900 805 254 48 65 chr4 50871628 50871919 -133416743 + MLT1J LTR MaLR 226 511 0 634 238 108 54 chr4 50871996 50872097 -133416565 + MIR SINE MIR 10 104 -158 717 194 0 16 chr4 50872097 50872226 -133416436 - FLAM_A SINE Alu -6 127 1 634 238 108 54 chr4 50872226 50872364 -133416298 + MIR SINE MIR 104 262 0 216 0 0 0 chr4 50873029 50873053 -133415609 + (TG)n Simple_repeat Simple_repeat 1 24 0 2122 198 44 35 chr4 50873055 50873534 -133415128 + MER74A LTR ERVL 3 485 -73 1601 164 4 18 chr4 50873537 50873817 -133414845 + AluJb SINE Alu 1 276 -36 23 0 0 0 chr4 50873821 50873844 -133414818 + AT_rich Low_complexity Low_complexity 1 23 0 252 22 67 0 chr4 50873951 50873996 -133414666 + (TG)n Simple_repeat Simple_repeat 2 49 0 1200 188 0 27 chr4 50874274 50874498 -133414164 - AluJo SINE Alu -94 218 1 1727 111 25 0 chr4 50874896 50875139 -133413523 - AluSx SINE Alu -6 306 58 273 170 21 0 chr4 50875400 50875447 -133413215 + Alu SINE Alu 1 48 -254 1807 196 72 47 chr4 50875569 50876054 -133412608 + MLT1D LTR MaLR 1 497 -8 299 214 26 8 chr4 50877897 50878014 -133410648 + CT-rich Low_complexity Low_complexity 2 120 0 758 221 19 0 chr4 50878113 50878267 -133410395 - MER5B DNA MER1_type -21 157 1 885 162 92 49 chr4 50879130 50879315 -133409347 - MER20 DNA MER1_type 0 219 27 588 252 68 160 chr4 50879597 50880152 -133408510 + MLT1K LTR MaLR 75 578 -10 1793 148 0 47 chr4 50880158 50880480 -133408182 + AluJb SINE Alu 1 308 0 5446 144 9 0 chr4 50880480 50881340 -133407322 - L1P LINE L1 -1521 4625 3758 467 133 27 0 chr4 50881341 50881416 -133407246 + L1P LINE L1 5302 5378 -788 * 3166 125 7 0 chr4 50881405 50881906 -133406756 + L1PA8 LINE L1 2 652 -5809 8724 150 26 37 chr4 50881910 50883597 -133405065 + L1PA8 LINE L1 989 2694 -3767 5172 162 24 30 chr4 50883586 50884074 -133404588 + L1PA8 LINE L1 4502 4991 -1496 * 1076 142 13 0 chr4 50884074 50884229 -133404433 + AluSg/x SINE Alu 141 297 -15 5172 162 24 30 chr4 50884229 50885695 -133402967 + L1PA8 LINE L1 4991 6487 0 449 337 123 24 chr4 50885768 50886151 -133402511 - L3 LINE CR1 -2 1575 1155 197 276 48 57 chr4 50886161 50886266 -133402396 + MIR SINE MIR 26 129 -133 31948 74 3 15 chr4 50886273 50891369 -133397293 - L1PA5 LINE L1 -1 6153 1121 44025 49 1 1 chr4 50891407 50897556 -133391106 - L1PA3 LINE L1 -3 6152 9 3189 100 88 0 chr4 50897569 50898037 -133390625 - L1PA5 LINE L1 -5015 1131 623 674 111 0 30 chr4 50898035 50898134 -133390528 - L1PA5 LINE L1 -6048 98 3 * 283 280 70 10 chr4 50898289 50898389 -133390273 - L3 LINE CR1 -420 1157 1052 351 273 84 42 chr4 50899095 50899238 -133389424 - MIR SINE MIR -108 154 6 211 305 8 51 chr4 50899722 50899840 -133388822 + GA-rich Low_complexity Low_complexity 2 114 0 202 410 0 0 chr4 50900482 50900560 -133388102 + L2 LINE L2 2996 3073 -199 398 280 9 19 chr4 50900730 50900837 -133387825 + L2 LINE L2 3203 3308 -5 772 208 193 5 chr4 50903049 50903246 -133385416 + MIR SINE MIR 24 257 -5 592 203 54 27 chr4 50904006 50904154 -133384508 - MIR SINE MIR 0 262 111 403 248 60 154 chr4 50904164 50904611 -133384051 - LTR16A1 LTR ERVL -1 456 52 649 286 117 49 chr4 50904910 50905218 -133383444 + MER102a DNA MER1_type 1 329 -1 1000 205 22 0 chr4 50907447 50907632 -133381030 - MER5A DNA MER1_type 0 189 1 260 282 55 74 chr4 50907632 50907834 -133380828 - L2 LINE L2 -514 2800 2603 2282 119 7 0 chr4 50907960 50908270 -133380392 + AluSx SINE Alu 1 312 0 353 248 126 72 chr4 50909349 50909627 -133379035 - MLT1K LTR MaLR -110 478 186 1526 141 33 22 chr4 50909761 50910031 -133378631 - MER58B DNA MER1_type -3 338 66 4312 152 23 4 chr4 50910101 50910799 -133377863 - MER50 LTR ERV1 -23 711 1 230 133 44 22 chr4 50910803 50910848 -133377814 + MLT1L LTR MaLR 230 275 -340 401 169 0 0 chr4 50910869 50910928 -133377734 + AluJ/FLAM SINE Alu 2 60 -252 545 267 53 23 chr4 50910936 50911202 -133377460 + MLT1L LTR MaLR 316 589 -26 221 271 21 0 chr4 50912645 50912693 -133375969 + MER91 DNA MER1_type 137 185 -5 247 197 49 49 chr4 50913584 50913645 -133375017 - AluYb8 SINE Alu -12 296 236 432 228 61 122 chr4 50913726 50913923 -133374739 - L1MC5 LINE L1 -730 7231 7047 315 50 0 0 chr4 50913923 50913963 -133374699 + MER4E LTR ERV1 1 40 -726 2850 158 94 2 chr4 50913967 50914475 -133374187 + MER4D LTR ERV1 349 903 0 5266 118 27 18 chr4 50914605 50915377 -133373285 + MER4E LTR ERV1 1 779 0 220 342 0 0 chr4 50916599 50916675 -133371987 - L2 LINE L2 -1 3312 3237 2009 190 232 48 chr4 50916898 50917084 -133371578 + L1MB2 LINE L1 3431 3581 -2565 842 172 0 15 chr4 50917084 50917218 -133371444 + FLAM_C SINE Alu 2 133 0 2009 190 232 48 chr4 50917218 50917678 -133370984 + L1MB2 LINE L1 3581 4196 -1950 1975 163 16 28 chr4 50917705 50917842 -133370820 + L1MB2 LINE L1 5053 5190 -981 3472 133 8 6 chr4 50917842 50918355 -133370307 + MER75 DNA T2_type 1 514 0 1975 163 16 28 chr4 50918355 50918785 -133369877 + L1MB2 LINE L1 5190 5614 -557 1565 129 4 0 chr4 50918807 50919040 -133369622 + L1PA14 LINE L1 5 238 -7343 * 7867 116 30 51 chr4 50919031 50919966 -133368696 + L1PA14 LINE L1 1500 2454 -5130 420 95 0 0 chr4 50919966 50920029 -133368633 + AluSp/q SINE Alu 239 301 -12 261 0 0 0 chr4 50920029 50920058 -133368604 + (TA)n Simple_repeat Simple_repeat 1 29 0 7867 116 30 51 chr4 50920058 50920741 -133367921 + L1PA14 LINE L1 2452 3154 -4430 15789 30 2 1 chr4 50920751 50922735 -133365927 - L1PA3 LINE L1 -743 5403 3417 6139 30 0 9 chr4 50922736 50923469 -133365193 + L1PA3 LINE L1 5430 6155 0 17401 172 13 7 chr4 50923469 50927900 -133360762 + L1PA14 LINE L1 3145 7596 -3 1242 197 48 3 chr4 50927892 50928187 -133360475 + L1MB2 LINE L1 5591 5898 -273 * 389 171 0 14 chr4 50928187 50928257 -133360405 + Tigger2 DNA MER2_type 1 69 -2649 * 1103 152 57 5 chr4 50928247 50928457 -133360205 + Tigger2 DNA MER2_type 2273 2493 -225 21 0 0 0 chr4 50928461 50928482 -133360180 + AT_rich Low_complexity Low_complexity 1 21 0 4504 137 45 11 chr4 50928482 50929297 -133359365 - L1PA15 LINE L1 -3 6162 5320 5847 136 13 6 chr4 50929306 50930794 -133357868 - L1PB2 LINE L1 -6 6145 4647 1034 151 141 0 chr4 50930794 50931000 -133357662 + Tigger2 DNA MER2_type 2484 2718 0 1187 175 43 4 chr4 50931000 50931257 -133357405 + L1MB2 LINE L1 5905 6171 0 203 234 21 0 chr4 50931292 50931339 -133357323 + (TA)n Simple_repeat Simple_repeat 2 49 0 607 190 14 0 chr4 50931784 50931926 -133356736 - MER103 DNA DNA -12 154 11 1940 150 24 0 chr4 50932008 50932301 -133356361 + AluSx SINE Alu 1 300 -12 21 57 0 0 chr4 50932301 50932336 -133356326 + AT_rich Low_complexity Low_complexity 1 35 0 468 271 84 20 chr4 50932936 50933116 -133355546 - MIR3 SINE MIR -50 158 20 424 232 171 11 chr4 50933165 50933346 -133355316 + L1ME4a LINE L1 5618 5827 -294 314 229 61 38 chr4 50933435 50933566 -133355096 + L1ME4a LINE L1 5982 6115 -6 32 26 0 0 chr4 50933576 50933615 -133355047 + AT_rich Low_complexity Low_complexity 1 39 0 764 178 25 89 chr4 50934218 50934420 -133354242 - MER5A DNA MER1_type 0 189 1 1573 181 33 25 chr4 50936657 50937017 -133351645 - MLT1A1 LTR MaLR -2 363 1 1193 155 76 66 chr4 50937357 50937674 -133350988 - MER33 DNA MER1_type -4 320 1 257 215 0 15 chr4 50937960 50938025 -133350637 - MER5A DNA MER1_type -116 73 10 489 288 41 18 chr4 50938084 50938254 -133350408 + MIR SINE MIR 2 175 -87 223 273 55 0 chr4 50938380 50938435 -133350227 + L2 LINE L2 3017 3074 -198 6495 129 84 7 chr4 50938437 50939580 -133349082 - Tigger3b DNA MER2_type 0 1231 1 2147 170 3 6 chr4 50939642 50940007 -133348655 - MLT1A1 LTR MaLR -1 364 1 468 311 24 24 chr4 50940122 50940286 -133348376 - MER5B DNA MER1_type -14 164 1 245 286 26 13 chr4 50940288 50940365 -133348297 + L2 LINE L2 3190 3267 -5 3262 242 93 31 chr4 50940435 50941590 -133347072 - MER69B DNA AcHobo 0 1226 1 733 226 79 11 chr4 50942343 50942520 -133346142 - MER5A DNA MER1_type 0 189 1 1032 115 5 91 chr4 50942708 50942916 -133345746 - MER20 DNA MER1_type -28 191 2 229 374 22 0 chr4 50943233 50943324 -133345338 - MIR SINE MIR -87 121 29 2198 106 0 0 chr4 50943512 50943817 -133344845 - AluSx SINE Alu 0 305 1 237 33 0 0 chr4 50944087 50944117 -133344545 + (TC)n Simple_repeat Simple_repeat 1 30 0 379 287 50 4 chr4 50945466 50945612 -133343050 + MIR SINE MIR 35 185 -68 335 316 45 76 chr4 50945739 50946030 -133342632 + HAL1 LINE L1 2225 2506 -1 692 263 71 55 chr4 50946506 50946761 -133341901 + MIR SINE MIR 4 262 0 1514 95 0 9 chr4 50946793 50947014 -133341648 - L1PA6 LINE L1 0 6154 5936 7161 23 0 0 chr4 50947040 50947912 -133340750 - L1PA3 LINE L1 0 6155 5284 4051 60 2 0 chr4 50947912 50948445 -133340217 - L1PA6 LINE L1 -218 5936 5403 2188 112 0 14 chr4 50949264 50949587 -133339075 + AluSc SINE Alu 1 319 0 22 35 0 0 chr4 50949654 50949683 -133338979 + AT_rich Low_complexity Low_complexity 1 29 0 244 229 0 0 chr4 50950022 50950070 -133338592 + MIR SINE MIR 82 129 -133 304 190 6 229 chr4 50950095 50950274 -133338388 - L2 LINE L2 0 3313 3175 214 314 43 0 chr4 50950327 50950397 -133338265 + L2 LINE L2 2992 3064 -249 260 382 15 35 chr4 50950449 50950648 -133338014 - L2 LINE L2 -302 3011 2817 25 0 0 0 chr4 50950672 50950697 -133337965 + AT_rich Low_complexity Low_complexity 1 25 0 754 248 9 9 chr4 50950801 50951015 -133337647 - MLT1F-int LTR MaLR -761 610 397 759 222 0 0 chr4 50951017 50951152 -133337510 + FRAM SINE Alu 1 131 -45 408 284 36 31 chr4 50951231 50951425 -133337237 - MLT1F-int LTR MaLR -1176 195 1 1554 293 47 6 chr4 50951427 50951919 -133336743 - MLT1F LTR MaLR -13 529 18 7321 179 23 8 chr4 50951920 50953629 -133335033 - L1PB4 LINE L1 -8 6148 4466 345 24 0 0 chr4 50953629 50953671 -133334991 + (TG)n Simple_repeat Simple_repeat 2 43 0 7321 179 23 8 chr4 50953671 50953690 -133334972 - L1PB4 LINE L1 -1690 4466 4449 1514 191 20 30 chr4 50953690 50953994 -133334668 - AluJb SINE Alu -10 302 2 7321 179 23 8 chr4 50953994 50954713 -133333949 - L1PB4 LINE L1 -1707 4449 3664 368 250 130 0 chr4 50954730 50954838 -133333824 + L2 LINE L2 2632 2753 -561 1360 224 0 26 chr4 50954871 50954908 -133333754 + L1PA15-16 LINE L1 2523 2559 -4290 793 147 0 22 chr4 50954908 50955044 -133333618 + FLAM_C SINE Alu 1 133 0 1360 224 0 26 chr4 50955044 50955345 -133333317 + L1PA15-16 LINE L1 2559 2852 -3997 * 2399 218 77 110 chr4 50955341 50956818 -133331844 - L1M4 LINE L1 -1560 4586 3160 240 286 12 24 chr4 50958050 50958134 -133330528 - MER5A DNA MER1_type -100 89 7 233 103 26 0 chr4 50958256 50958295 -133330367 - L2 LINE L2 0 3313 3274 215 248 101 28 chr4 50958814 50958923 -133329739 - MIR SINE MIR -65 197 81 222 37 0 0 chr4 50959259 50959286 -133329376 + (TA)n Simple_repeat Simple_repeat 2 28 0 45 34 0 0 chr4 50959298 50959357 -133329305 + AT_rich Low_complexity Low_complexity 1 59 0 242 184 0 0 chr4 50959985 50960034 -133328628 - MLT1H LTR MaLR -15 534 486 1734 140 67 0 chr4 50960161 50960446 -133328216 + AluSq SINE Alu 1 304 -9 2330 93 30 0 chr4 50960497 50960798 -133327864 + AluSg SINE Alu 1 310 0 315 306 0 16 chr4 50960833 50960954 -133327708 - MLT1H LTR MaLR -396 153 35 950 191 64 39 chr4 50961132 50961577 -133327085 - LTR48B LTR ERV1 -2 711 132 251 315 0 0 chr4 50961580 50961669 -133326993 - MER34 LTR ERV1 -453 89 1 197 286 63 32 chr4 50962504 50962567 -133326095 + L2 LINE L2 3199 3263 -50 194 197 33 0 chr4 50962615 50962676 -133325986 + (CATATA)n Simple_repeat Simple_repeat 2 64 0 339 25 0 0 chr4 50963110 50963150 -133325512 + (TG)n Simple_repeat Simple_repeat 2 41 0 1906 179 2 76 chr4 50963215 50963635 -133325027 - MLT1B LTR MaLR -1 389 1 570 252 104 22 chr4 50963848 50964118 -133324544 - LTR43 LTR ERV1 -124 478 187 650 204 56 14 chr4 50965054 50965270 -133323392 - L1MA6 LINE L1 -6 6294 6070 2676 117 0 0 chr4 50965535 50965928 -133322734 + LOR1a LTR ERV1 105 497 0 198 0 0 0 chr4 50965973 50965995 -133322667 + (A)n Simple_repeat Simple_repeat 1 22 0 2185 131 0 3 chr4 50966277 50966583 -133322079 + AluSx SINE Alu 1 305 -7 25 83 0 0 chr4 50966705 50966765 -133321897 + AT_rich Low_complexity Low_complexity 1 60 0 185 360 20 20 chr4 50968865 50968965 -133319697 - MIR3 SINE MIR -39 169 70 213 250 40 135 chr4 50970372 50970520 -133318142 + L2 LINE L2 2508 2641 -673 347 312 99 35 chr4 50970903 50971044 -133317618 + L2 LINE L2 3123 3272 0 273 289 47 87 chr4 50971861 50972010 -133316652 - L2 LINE L2 -2 3270 3128 288 224 218 34 chr4 50972253 50972432 -133316230 - L1ME4a LINE L1 -66 6055 5844 348 24 0 0 chr4 50973318 50973359 -133315303 + (CA)n Simple_repeat Simple_repeat 2 42 0 255 140 0 0 chr4 50973359 50973409 -133315253 + (GA)n Simple_repeat Simple_repeat 1 50 0 2246 108 56 34 chr4 50973518 50973926 -133314736 + L1MA3 LINE L1 5889 6305 0 930 135 24 18 chr4 50974845 50975015 -133313647 + MER53 DNA DNA 4 174 -15 668 117 67 8 chr4 50975217 50975337 -133313325 + LTR54B LTR ERV1 1 127 -371 265 159 299 0 chr4 50975399 50975506 -133313156 + LTR54B LTR ERV1 234 372 -126 492 155 107 0 chr4 50975507 50975610 -133313052 + MER57A-int LTR ERV1 7424 7537 0 1689 179 50 14 chr4 50975610 50975974 -133312688 + MER57A LTR ERV1 1 377 -26 1729 196 25 6 chr4 50976119 50976477 -133312185 + MLT1A1 LTR MaLR 1 365 0 684 249 14 105 chr4 50976585 50976658 -133312004 + MIR SINE MIR 10 88 -174 1820 191 56 73 chr4 50976658 50977177 -133311485 + LTR54 LTR ERV1 1 510 0 684 249 14 105 chr4 50977177 50977380 -133311282 + MIR SINE MIR 88 261 -1 957 240 45 4 chr4 50978303 50978549 -133310113 + MIR SINE MIR 7 262 0 7525 26 5 0 chr4 50978641 50979841 -133308821 + L1PA4 LINE L1 4964 6167 0 180 111 0 0 chr4 50979864 50979891 -133308771 + (A)n Simple_repeat Simple_repeat 1 27 0 1072 342 69 36 chr4 50980297 50981127 -133307535 + L2 LINE L2 2197 3057 -215 692 215 95 20 chr4 50981190 50981390 -133307272 - L2 LINE L2 -5 3308 3094 387 241 88 80 chr4 50981410 50981547 -133307115 + L2 LINE L2 3159 3296 -17 1115 195 93 60 chr4 50981612 50982042 -133306620 + LTR56 LTR ERV1 1 444 -1 387 253 29 63 chr4 50983222 50983430 -133305232 - MIR SINE MIR -50 212 17 254 106 21 0 chr4 50983808 50983855 -133304807 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 661 171 81 0 chr4 50984064 50984187 -133304475 - FLAM_A SINE Alu 0 133 1 1204 188 5 10 chr4 50984317 50984524 -133304138 - AluJb SINE Alu -106 206 1 21 0 0 0 chr4 50984531 50984552 -133304110 + AT_rich Low_complexity Low_complexity 1 21 0 2103 97 29 0 chr4 50984589 50984868 -133303794 + AluSg SINE Alu 3 289 -21 238 187 0 53 chr4 50985656 50985731 -133302931 - L1ME4a LINE L1 0 6121 6051 34 42 0 0 chr4 50985731 50985779 -133302883 + AT_rich Low_complexity Low_complexity 1 48 0 1661 171 0 11 chr4 50985779 50986042 -133302620 - AluSx SINE Alu -52 260 1 438 279 73 18 chr4 50986880 50987045 -133301617 - MLT1J LTR MaLR -312 199 26 1028 214 11 34 chr4 50988249 50988515 -133300147 + MER46C DNA MER2_type 71 330 -8 267 248 202 0 chr4 50989385 50989494 -133299168 + L2 LINE L2 2871 3001 -312 233 219 31 31 chr4 50989530 50989594 -133299068 + L2 LINE L2 3209 3272 0 243 88 0 0 chr4 50989807 50989841 -133298821 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 685 98 0 11 chr4 50990320 50990412 -133298250 + AluJb SINE Alu 24 114 -198 322 223 72 29 chr4 50990557 50990696 -133297966 - L1ME4a LINE L1 0 6121 5977 330 304 19 25 chr4 50990804 50990965 -133297697 - L1ME4a LINE L1 -196 5925 5766 690 249 54 29 chr4 50990967 50991244 -133297418 - L1ME LINE L1 -308 5813 5530 2289 94 3 0 chr4 50991429 50991716 -133296946 - AluSp SINE Alu -25 288 1 1171 209 87 22 chr4 50992050 50992089 -133296573 - MLT2B3 LTR ERVL 0 554 519 588 33 44 0 chr4 50992089 50992179 -133296483 + (TAGA)n Simple_repeat Simple_repeat 3 96 0 4014 169 24 3 chr4 50992179 50992884 -133295778 + MER72 LTR ERV1 2 721 -1 1171 209 87 22 chr4 50992884 50993154 -133295508 - MLT2B3 LTR ERVL -34 520 224 3128 132 16 0 chr4 50993487 50994001 -133294661 - L1MA6 LINE L1 -10 6472 5951 39669 47 21 1 chr4 50994020 51000045 -133288617 - L1PA3 LINE L1 -4 6151 3 14256 196 33 26 chr4 51000044 51005419 -133283243 - L1MA6 LINE L1 -522 5960 552 * 1053 309 40 3 chr4 51005953 51006280 -133282382 - L1MA6 LINE L1 -5614 635 297 300 285 81 0 chr4 51006289 51006412 -133282250 + MLT1J LTR MaLR 65 197 -314 219 36 0 0 chr4 51006926 51006954 -133281708 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 2153 146 0 9 chr4 51006997 51007312 -133281350 + AluSx SINE Alu 1 312 0 2090 112 3 7 chr4 51007756 51008042 -133280620 - AluSx SINE Alu -27 285 1 2179 129 3 0 chr4 51008252 51008561 -133280101 + AluSp SINE Alu 1 310 -3 381 314 40 57 chr4 51008729 51008915 -133279747 + L1M4 LINE L1 3514 3697 -2449 2078 74 0 0 chr4 51008915 51009171 -133279491 + AluY SINE Alu 39 294 -17 381 314 40 57 chr4 51009171 51009232 -133279430 + L1M4 LINE L1 3697 3757 -2389 364 282 79 25 chr4 51009235 51009437 -133279225 + L1M4 LINE L1 3733 3945 -2201 331 299 164 22 chr4 51009757 51010165 -133278497 + L1M4 LINE L1 4499 4964 -1182 773 307 98 31 chr4 51010204 51010624 -133278038 - MLT1E LTR MaLR -145 448 1 950 270 31 0 chr4 51010762 51010984 -133277678 + MIR SINE MIR 21 249 -13 933 212 35 5 chr4 51011113 51011316 -133277346 + MER6B DNA MER2_type 2 210 0 292 153 56 49 chr4 51011893 51012037 -133276625 + (CACAA)n Simple_repeat Simple_repeat 4 148 0 6343 204 64 51 chr4 51012239 51013933 -133274729 + MSTD-int LTR MaLR 20 1735 0 689 169 136 71 chr4 51013933 51014241 -133274421 + MSTD LTR MaLR 1 396 0 1027 198 8 53 chr4 51014258 51014521 -133274141 + MLT1A2 LTR MaLR 124 374 0 1595 144 125 78 chr4 51014940 51015349 -133273313 - MSTA LTR MaLR 0 428 1 5706 150 76 13 chr4 51015349 51015513 -133273149 - MSTA-int LTR MaLR 0 1580 1428 450 0 0 0 chr4 51015513 51015563 -133273099 + (TAAAA)n Simple_repeat Simple_repeat 1 50 0 5706 150 76 13 chr4 51015563 51016123 -133272539 - MSTA-int LTR MaLR -152 1428 905 195 42 0 0 chr4 51016123 51016147 -133272515 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 207 0 0 0 chr4 51016146 51016169 -133272493 + (GA)n Simple_repeat Simple_repeat 2 24 0 5706 150 76 13 chr4 51016147 51016571 -133272091 - MSTA-int LTR MaLR -675 905 423 1809 132 11 22 chr4 51016572 51016921 -133271741 - MER4A LTR ERV1 0 664 261 569 140 0 30 chr4 51016922 51017022 -133271640 - MER4A LTR ERV1 -567 97 1 2302 157 12 0 chr4 51017038 51017440 -133271222 - MSTA-int LTR MaLR -1171 409 3 768 152 146 0 chr4 51017442 51017593 -133271069 - MSTA LTR MaLR 0 428 256 3540 183 31 19 chr4 51018107 51018811 -133269851 + MER72 LTR ERV1 10 722 0 3139 152 60 0 chr4 51019053 51019574 -133269088 - MER41C LTR ERV1 -2 552 1 4167 71 2 0 chr4 51019574 51020122 -133268540 - MER41C-int LTR ERV1 0 7756 7208 * 11075 98 1 1 chr4 51020118 51022122 -133266540 - MER41C-int LTR ERV1 -1361 6395 4394 * 11628 97 37 20 chr4 51022117 51023783 -133264879 - MER41C-int LTR ERV1 -4701 3055 1363 6395 98 44 3 chr4 51023775 51024667 -133263995 - MER41C-int LTR ERV1 -6826 930 3 * 3505 140 65 0 chr4 51024669 51025189 -133263473 - MER41C LTR ERV1 0 554 1 5439 86 25 0 chr4 51025379 51026053 -133262609 + LTR8 LTR ERV1 1 691 0 713 195 46 46 chr4 51026251 51026425 -133262237 + MLT1J LTR MaLR 23 196 -315 1773 316 77 10 chr4 51026464 51027087 -133261575 + MER115 DNA AcHobo 7 671 -22 459 230 81 73 chr4 51027103 51027351 -133261311 + MLT1J LTR MaLR 227 476 -35 777 223 34 39 chr4 51027521 51027685 -133260977 + MIR SINE MIR 31 195 -67 1913 202 26 3 chr4 51027685 51028037 -133260625 - MLT1A1 LTR MaLR -2 363 4 777 223 34 39 chr4 51028037 51028105 -133260557 + MIR SINE MIR 195 262 0 673 242 124 38 chr4 51028134 51028429 -133260233 - MLT1I LTR MaLR -19 390 96 355 336 0 0 chr4 51028874 51028978 -133259684 + MLT1I LTR MaLR 63 166 -243 461 253 51 6 chr4 51029511 51029669 -133258993 - L2 LINE L2 -65 3248 3084 24 0 0 0 chr4 51030182 51030206 -133258456 + AT_rich Low_complexity Low_complexity 1 24 0 209 308 177 32 chr4 51030373 51030567 -133258095 + MIR SINE MIR 40 261 -1 1124 156 131 134 chr4 51030596 51030661 -133258001 + MLT1A1 LTR MaLR 1 65 -300 2726 124 3 0 chr4 51030661 51031024 -133257638 - THE1B LTR MaLR 0 364 1 1124 156 131 134 chr4 51031024 51031324 -133257338 + MLT1A1 LTR MaLR 65 365 0 381 249 30 79 chr4 51031370 51031535 -133257127 - MER103 DNA DNA -8 158 2 2287 119 0 0 chr4 51031834 51032146 -133256516 + AluSx SINE Alu 1 312 0 289 277 185 0 chr4 51032840 51032970 -133255692 + MIR SINE MIR 100 253 -9 217 269 19 39 chr4 51033490 51033594 -133255068 + GA-rich Low_complexity Low_complexity 2 103 0 749 236 62 70 chr4 51033855 51034113 -133254549 + MIR SINE MIR 7 262 0 612 260 120 21 chr4 51034178 51034370 -133254292 - MIR SINE MIR -21 241 31 488 245 20 0 chr4 51034388 51034490 -133254172 + MER58A DNA MER1_type 37 140 0 465 229 0 18 chr4 51034574 51034683 -133253979 + MER53 DNA DNA 1 107 -82 2159 164 16 46 chr4 51034958 51035345 -133253317 + L1MA8 LINE L1 5844 6218 -73 2519 139 56 15 chr4 51035345 51035756 -133252906 + MSTA LTR MaLR 1 428 0 2159 164 16 46 chr4 51035756 51035800 -133252862 + L1MA8 LINE L1 6218 6262 -29 1910 264 55 32 chr4 51036539 51037107 -133251555 + MLT1G LTR MaLR 10 590 0 180 0 0 0 chr4 51037118 51037138 -133251524 + (GA)n Simple_repeat Simple_repeat 1 20 0 271 316 145 0 chr4 51038159 51038276 -133250386 - MIR3 SINE MIR -41 167 34 2543 80 0 0 chr4 51038745 51039056 -133249606 + AluY SINE Alu 1 311 0 180 0 0 0 chr4 51039061 51039081 -133249581 + (TA)n Simple_repeat Simple_repeat 2 21 0 27707 49 5 0 chr4 51039198 51042633 -133246029 - L1P LINE L1 -865 5281 1831 43438 53 3 4 chr4 51042698 51048832 -133239830 + L1PA3 LINE L1 27 6155 0 9472 81 5 0 chr4 51048844 51050079 -133238583 - L1P LINE L1 -4304 1842 602 5665 73 7 0 chr4 51050076 51051152 -133237510 - L1P2 LINE L1 -443 5711 4631 * 26024 112 13 12 chr4 51051146 51055040 -133233622 - L1P2 LINE L1 -2238 3908 13 788 240 17 6 chr4 51055051 51055226 -133233436 - L1M4 LINE L1 -1979 4167 3991 243 0 0 0 chr4 51055349 51055376 -133233286 + (TA)n Simple_repeat Simple_repeat 1 27 0 2066 146 0 0 chr4 51055418 51055720 -133232942 + AluSx SINE Alu 6 307 -5 3747 143 39 25 chr4 51055963 51056091 -133232571 + L1MA9 LINE L1 5654 5779 -533 279 0 0 0 chr4 51056091 51056122 -133232540 + (CA)n Simple_repeat Simple_repeat 2 32 0 3747 143 39 25 chr4 51056122 51056643 -133232019 + L1MA9 LINE L1 5779 6312 0 213 225 0 0 chr4 51058277 51058317 -133230345 + (TG)n Simple_repeat Simple_repeat 2 41 0 198 171 0 0 chr4 51058462 51058503 -133230159 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 733 248 54 27 chr4 51058767 51058813 -133229849 - MIR SINE MIR -17 245 202 1973 115 112 0 chr4 51058813 51059118 -133229544 - MER44D DNA MER2_type 0 609 1 733 248 54 27 chr4 51059118 51059293 -133229369 - MIR SINE MIR -60 202 18 276 326 29 14 chr4 51059519 51059657 -133229005 + HAL1b LINE L1 1191 1330 -18 317 261 169 21 chr4 51059717 51059859 -133228803 + MIR SINE MIR 29 191 -71 295 266 159 66 chr4 51060528 51060607 -133228055 + LTR67 LTR ERVL 118 188 -369 3080 154 18 42 chr4 51060607 51061151 -133227511 - LTR26B LTR ERV1 0 531 1 295 266 159 66 chr4 51061151 51061466 -133227196 + LTR67 LTR ERVL 188 549 -8 784 206 29 11 chr4 51061710 51061885 -133226777 + MER5B DNA MER1_type 1 178 0 871 117 49 127 chr4 51061892 51061959 -133226703 + MER5A DNA MER1_type 1 72 -117 1970 145 30 0 chr4 51061959 51062263 -133226399 + AluSq SINE Alu 1 313 0 871 117 49 127 chr4 51062263 51062400 -133226262 + MER5A DNA MER1_type 72 189 0 209 275 301 26 chr4 51063612 51063805 -133224857 - MIR SINE MIR 0 262 17 308 305 85 33 chr4 51064002 51064317 -133224345 - L2 LINE L2 -238 3034 2633 309 299 63 8 chr4 51064319 51064446 -133224216 - L2 LINE L2 -12 3301 3168 187 71 14 157 chr4 51064699 51064740 -133223922 - MER5C DNA MER1_type -207 117 87 1994 130 0 7 chr4 51064740 51065063 -133223599 - AluSx SINE Alu 0 321 1 187 71 14 157 chr4 51065063 51065090 -133223572 - MER5C DNA MER1_type -237 87 58 993 129 5 54 chr4 51066204 51066390 -133222272 + FRAM SINE Alu 1 172 -4 201 147 0 0 chr4 51066564 51066598 -133222064 + (A)n Simple_repeat Simple_repeat 1 34 0 640 226 19 13 chr4 51067374 51067529 -133221133 - MLT1C LTR MaLR 0 467 312 226 191 0 0 chr4 51067529 51067571 -133221091 - MSTA LTR MaLR 0 428 387 20513 139 17 15 chr4 51067571 51072855 -133215807 + L1PA8A LINE L1 3 5299 -1162 6712 95 2 2 chr4 51072897 51074087 -133214575 + L1PA8A LINE L1 5257 6445 -1 1823 133 150 12 chr4 51074088 51074434 -133214228 - MSTA LTR MaLR -34 394 1 1099 210 55 39 chr4 51074436 51074745 -133213917 - MLT1C LTR MaLR -153 314 1 203 267 0 0 chr4 51074809 51074854 -133213808 + MIR SINE MIR 99 143 -119 1084 68 0 7 chr4 51075119 51075265 -133213397 - MER4A LTR ERV1 -519 145 1 6155 163 24 4 chr4 51075449 51077444 -133211218 - L1PA16 LINE L1 -9 6157 4125 493 242 94 62 chr4 51078078 51078474 -133210188 + MLT1F1 LTR MaLR 2 413 -154 8110 101 5 1 chr4 51078506 51080370 -133208292 - L1PA7 LINE L1 0 6154 4287 7472 101 4 28 chr4 51080371 51081448 -133207214 + MER11C LTR ERVK 7 1057 -14 1584 89 0 0 chr4 51081484 51081686 -133206976 - L1PA7 LINE L1 -1846 4300 4099 570 221 118 41 chr4 51081686 51081881 -133206781 + MLT1F1 LTR MaLR 384 567 0 192 107 18 36 chr4 51081901 51081957 -133206705 + (TATAA)n Simple_repeat Simple_repeat 5 59 0 766 188 0 8 chr4 51082592 51082709 -133205953 + FLAM_C SINE Alu 2 117 -26 195 69 0 0 chr4 51082710 51082739 -133205923 + (TC)n Simple_repeat Simple_repeat 2 30 0 229 89 44 0 chr4 51082740 51082785 -133205877 + (TA)n Simple_repeat Simple_repeat 2 48 0 392 282 291 5 chr4 51082848 51083054 -133205608 - L2 LINE L2 -992 2322 2058 646 314 14 28 chr4 51083364 51083647 -133205015 + L2 LINE L2 3025 3303 -10 5196 126 57 57 chr4 51083705 51084522 -133204140 + L1MA9 LINE L1 5109 5925 -387 8103 33 0 0 chr4 51084522 51085611 -133203051 + L1PA3 LINE L1 5065 6152 -3 5196 126 57 57 chr4 51085611 51085646 -133203016 + L1MA9 LINE L1 5925 5959 -353 2098 68 57 7 chr4 51085646 51085926 -133202736 + AluY SINE Alu 1 294 -17 5196 126 57 57 chr4 51085926 51086273 -133202389 + L1MA9 LINE L1 5959 6311 -1 563 147 18 55 chr4 51086280 51086389 -133202273 - L1MD1 LINE L1 -9 6627 6523 227 114 0 114 chr4 51086389 51086433 -133202229 - L1MD1 LINE L1 -466 6170 6132 * 948 157 113 0 chr4 51086421 51086606 -133202056 - L1MA7 LINE L1 -426 5865 5660 2128 189 20 11 chr4 51086610 51087060 -133201602 - L1MD1 LINE L1 -499 6137 5684 1677 219 67 17 chr4 51087215 51087681 -133200981 - L1MD1 LINE L1 -847 5693 5205 3513 115 0 22 chr4 51087690 51088196 -133200466 + MER1A DNA MER1_type 35 529 0 5975 251 101 49 chr4 51088198 51089322 -133199340 - L1MD1 LINE L1 -1330 5210 4146 2318 113 0 0 chr4 51089322 51089631 -133199031 - AluSc SINE Alu 0 309 1 5975 251 101 49 chr4 51089631 51090921 -133197741 - L1MD1 LINE L1 -2394 4146 2925 2121 138 67 0 chr4 51090921 51091262 -133197400 - MER47A DNA MER2_type -2 364 1 5975 251 101 49 chr4 51091262 51091394 -133197268 - L1MD1 LINE L1 -3615 2925 2801 1173 82 0 0 chr4 51091394 51091541 -133197121 - L1PA8 LINE L1 0 6172 6026 2116 121 26 0 chr4 51091550 51091855 -133196807 - AluSq SINE Alu 0 313 1 5975 251 101 49 chr4 51091855 51092236 -133196426 - L1MD1 LINE L1 -3746 2794 2106 228 114 0 0 chr4 51092245 51092280 -133196382 - AluSc SINE Alu -33 266 232 1422 93 42 0 chr4 51092280 51092473 -133196189 - AluSc SINE Alu -108 201 1 620 163 30 59 chr4 51092475 51092610 -133196052 - AluJo/FLAM SINE Alu -170 132 2 2341 79 7 0 chr4 51092631 51092935 -133195727 - AluY SINE Alu -5 306 1 912 190 6 29 chr4 51092936 51093110 -133195552 - MER21B LTR ERV1 -545 318 149 293 226 0 108 chr4 51093263 51093356 -133195306 - MER21B LTR ERV1 -765 98 16 1332 122 54 0 chr4 51093356 51093578 -133195084 + MER44D DNA MER2_type 1 504 -105 22 0 0 0 chr4 51093589 51093611 -133195051 + AT_rich Low_complexity Low_complexity 1 22 0 883 124 23 0 chr4 51093612 51093741 -133194921 - FLAM_C SINE Alu -11 132 1 542 171 0 124 chr4 51093742 51093871 -133194791 + MER44D DNA MER2_type 497 609 0 2607 171 35 21 chr4 51093898 51094466 -133194196 - L1MD1 LINE L1 -4464 2076 1501 274 283 142 17 chr4 51095216 51095336 -133193326 + L2 LINE L2 3134 3268 -4 244 338 0 14 chr4 51095413 51095484 -133193178 - L2 LINE L2 -2 3270 3201 269 266 0 0 chr4 51095641 51095705 -133192957 + MER58 DNA MER1_type 2357 2420 0 947 251 119 10 chr4 51096081 51096150 -133192512 - L2 LINE L2 -378 2936 2876 2390 132 28 6 chr4 51096150 51096506 -133192156 + THE1B LTR MaLR 1 364 0 947 251 119 10 chr4 51096506 51096739 -133191923 - L2 LINE L2 -438 2876 2601 2299 102 3 0 chr4 51096886 51097212 -133191450 + AluSp SINE Alu 1 313 0 330 299 129 10 chr4 51097212 51097397 -133191265 - MARNA DNA Mariner -361 225 15 214 315 54 11 chr4 51098744 51098836 -133189826 + MIR SINE MIR 117 212 -50 239 367 0 8 chr4 51098956 51099076 -133189586 - L2 LINE L2 -217 3055 2937 805 199 0 0 chr4 51099185 51099326 -133189336 - MER89 LTR ERV1 0 559 419 694 165 0 9 chr4 51099354 51099469 -133189193 - MER89 LTR ERV1 -122 437 324 1605 83 5 5 chr4 51099469 51099687 -133188975 - pTR5 LTR ERV1 -2050 388 171 357 204 31 20 chr4 51099689 51099787 -133188875 - LTR30 LTR ERV1 -80 642 544 5799 122 47 62 chr4 51099787 51100954 -133187708 - pTR5 LTR ERV1 -413 2025 743 919 192 111 13 chr4 51100954 51101188 -133187474 - MER89 LTR ERV1 -229 330 74 597 244 54 45 chr4 51101290 51101511 -133187151 - MER89 LTR ERV1 -336 223 1 2300 125 73 14 chr4 51102770 51103114 -133185548 - THE1B LTR MaLR 0 364 1 1104 174 42 14 chr4 51103166 51103379 -133185283 + MER20 DNA MER1_type 1 219 0 317 320 70 101 chr4 51103622 51103950 -133184712 + L2 LINE L2 2926 3243 -29 193 216 0 0 chr4 51104085 51104122 -133184540 + MIR SINE MIR 197 233 -29 601 306 121 18 chr4 51104430 51104770 -133183892 + MLT1J2 LTR MaLR 76 450 0 539 315 77 38 chr4 51105370 51105710 -133182952 + HAL1 LINE L1 744 1096 -1411 243 314 10 10 chr4 51105733 51105835 -133182827 + MLT1F1 LTR MaLR 24 125 -442 3085 191 3 8 chr4 51105849 51106439 -133182223 + L1MC3 LINE L1 7198 7784 -1 551 302 26 19 chr4 51106432 51106700 -133181962 + HAL1 LINE L1 1072 1341 -1166 * 247 106 0 0 chr4 51106733 51106780 -133181882 + LTR66 LTR ERVL 394 440 -170 1121 272 49 8 chr4 51107671 51108057 -133180605 + HAL1 LINE L1 1388 1789 -718 287 224 0 0 chr4 51108570 51108628 -133180034 + HAL1 LINE L1 2245 2302 -205 2159 145 3 0 chr4 51108813 51109124 -133179538 - AluJb SINE Alu 0 312 1 189 0 0 0 chr4 51109524 51109545 -133179117 + (CA)n Simple_repeat Simple_repeat 2 22 0 246 116 0 0 chr4 51109615 51109658 -133179004 + (CA)n Simple_repeat Simple_repeat 2 44 0 213 139 0 0 chr4 51109740 51109783 -133178879 + (CA)n Simple_repeat Simple_repeat 1 43 0 181 274 0 20 chr4 51109818 51109869 -133178793 + L2 LINE L2 3261 3310 -3 192 246 70 18 chr4 51109885 51109942 -133178720 + L2 LINE L2 3127 3186 -86 595 325 33 33 chr4 51110295 51110476 -133178186 + MIR SINE MIR 13 196 -66 1322 226 86 43 chr4 51110476 51110848 -133177814 - MLT1B LTR MaLR 0 390 3 595 325 33 33 chr4 51110848 51110906 -133177756 + MIR SINE MIR 195 252 -10 200 287 146 27 chr4 51111970 51112158 -133176504 - MIR SINE MIR -6 256 45 184 158 79 0 chr4 51112932 51112970 -133175692 - L2 LINE L2 -1896 1418 1378 555 256 80 6 chr4 51113129 51113305 -133175357 + L1ME4a LINE L1 5682 5870 -251 225 289 23 55 chr4 51113500 51113628 -133175034 - L2 LINE L2 -647 2667 2544 286 326 0 0 chr4 51113654 51113740 -133174922 + (TGG)n Simple_repeat Simple_repeat 2 87 0 1381 232 62 68 chr4 51113855 51113962 -133174700 + MER113 DNA MER1_type? 11 117 -404 213 65 0 0 chr4 51113962 51113993 -133174669 + (TTA)n Simple_repeat Simple_repeat 3 33 0 962 53 9 0 chr4 51113993 51114106 -133174556 - L1PA3 LINE L1 -18 6137 6024 1381 232 62 68 chr4 51114106 51114467 -133174195 + MER113 DNA MER1_type? 115 477 -44 22 35 0 0 chr4 51114930 51114959 -133173703 + AT_rich Low_complexity Low_complexity 1 29 0 271 162 105 76 chr4 51115088 51115193 -133173469 - MIR SINE MIR -56 206 99 3545 74 35 7 chr4 51115234 51115254 -133173408 - L1PA8 LINE L1 -2 6170 6152 2597 58 0 0 chr4 51115254 51115564 -133173098 + AluY SINE Alu 1 310 -1 3545 74 35 7 chr4 51115564 51116000 -133172662 - L1PA8 LINE L1 -20 6152 5701 189 0 0 0 chr4 51117560 51117581 -133171081 + (CA)n Simple_repeat Simple_repeat 2 22 0 538 153 51 0 chr4 51117640 51117738 -133170924 + MER68 LTR ERV1 1 103 -459 225 65 65 0 chr4 51117761 51117792 -133170870 - MLT1J LTR MaLR -478 33 1 393 114 0 57 chr4 51117864 51117934 -133170728 + MER68 LTR ERV1 188 253 -309 349 180 110 60 chr4 51117935 51118035 -133170627 + MER68 LTR ERV1 450 554 -8 1282 230 86 39 chr4 51118041 51118424 -133170238 - MLT1J LTR MaLR -110 401 1 488 226 91 84 chr4 51120101 51120516 -133168146 - MLT1J LTR MaLR -42 469 19 284 281 72 43 chr4 51120712 51120851 -133167811 + MIR SINE MIR 2 144 -118 1650 152 12 4 chr4 51121132 51121389 -133167273 + AluJb SINE Alu 25 283 -29 389 316 13 123 chr4 51121576 51121877 -133166785 + L2 LINE L2 3004 3271 -1 264 270 9 81 chr4 51122085 51122196 -133166466 + MIR SINE MIR 88 190 -72 830 219 117 0 chr4 51123140 51123336 -133165326 - MER20 DNA MER1_type 0 219 1 583 282 40 5 chr4 51123350 51123552 -133165110 - L1M4 LINE L1 -3463 2683 2475 1878 131 0 0 chr4 51123559 51123819 -133164843 - AluSx SINE Alu -19 293 34 612 164 75 22 chr4 51123852 51123986 -133164676 - MER20 DNA MER1_type -78 141 1 876 184 7 0 chr4 51124364 51124516 -133164146 + FRAM SINE Alu 1 151 -25 926 280 25 21 chr4 51124685 51124971 -133163691 - MLT1L LTR MaLR -11 604 318 227 250 28 14 chr4 51125098 51125170 -133163492 - MLT1L LTR MaLR -532 83 11 5063 53 12 7 chr4 51125238 51125843 -133162819 - L1PA7 LINE L1 -2 6152 5545 359 305 52 52 chr4 51125851 51126005 -133162657 - MIR SINE MIR -104 158 5 194 0 39 0 chr4 51126476 51126502 -133162160 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 458 269 42 124 chr4 51127027 51127358 -133161304 + L2 LINE L2 2909 3212 -60 920 259 86 75 chr4 51127478 51128012 -133160650 + MER115 DNA AcHobo 42 690 -3 243 0 0 0 chr4 51128977 51129004 -133159658 + (CA)n Simple_repeat Simple_repeat 2 28 0 242 231 39 135 chr4 51129332 51129540 -133159122 + L1MC4 LINE L1 7829 8016 -26 22 70 0 0 chr4 51129540 51129583 -133159079 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr4 51129998 51130021 -133158641 + AT_rich Low_complexity Low_complexity 1 23 0 807 93 19 0 chr4 51132204 51132311 -133156351 + AluSp/q SINE Alu 190 298 -15 7933 36 0 0 chr4 51132618 51133544 -133155118 - L1PA4 LINE L1 -2 6153 5226 24693 88 6 6 chr4 51133849 51137201 -133151461 + L1P LINE L1 11 3361 -2785 1521 204 58 29 chr4 51137354 51137561 -133151101 + L1ME LINE L1 4770 4970 -1176 2684 99 34 0 chr4 51137561 51137913 -133150749 - THE1B LTR MaLR 0 364 1 1521 204 58 29 chr4 51137913 51138122 -133150540 + L1ME LINE L1 4970 5198 -948 2704 163 50 2 chr4 51138132 51138575 -133150087 + L1P3 LINE L1 10 473 -5988 4271 91 9 0 chr4 51138679 51139230 -133149432 - L1PA14 LINE L1 0 6161 5606 2171 55 4 7 chr4 51140168 51140440 -133148222 - AluY SINE Alu -40 271 1 263 308 73 38 chr4 51140609 51140906 -133147756 - L1ME LINE L1 -359 5762 5450 1535 130 30 4 chr4 51140906 51141136 -133147526 + MER46A DNA MER2_type 1 236 0 263 308 73 38 chr4 51141136 51141179 -133147483 - L1ME LINE L1 -671 5450 5410 840 73 0 40 chr4 51141862 51141986 -133146676 + L1PA8 LINE L1 6052 6170 -2 689 214 68 19 chr4 51141992 51142198 -133146464 + L1ME LINE L1 5185 5400 -746 713 218 75 11 chr4 51142206 51142380 -133146282 + L1ME LINE L1 5480 5664 -502 267 118 235 0 chr4 51142380 51142431 -133146231 + AluS SINE Alu 1 63 -240 569 245 47 62 chr4 51142552 51142744 -133145918 - MIR SINE MIR -56 206 18 376 198 198 16 chr4 51142832 51142958 -133145704 - MER5B DNA MER1_type -10 168 20 736 154 8 17 chr4 51143320 51143437 -133145225 - FLAM_A SINE Alu -20 122 7 5437 161 42 21 chr4 51143746 51144805 -133143857 + L1P3 LINE L1 1272 2352 -4109 241 236 0 0 chr4 51145616 51145671 -133142991 + FLAM SINE Alu 67 121 -12 1878 145 10 7 chr4 51145768 51146058 -133142604 + AluJo SINE Alu 6 296 -16 1313 115 8 107 chr4 51146161 51146258 -133142404 - AluSq SINE Alu -102 211 106 2045 102 7 14 chr4 51146258 51146551 -133142111 - AluSc SINE Alu -18 291 1 1313 115 8 107 chr4 51146551 51146687 -133141975 - AluSq SINE Alu -207 106 1 388 305 204 43 chr4 51146796 51147646 -133141016 + L2 LINE L2 552 1537 -1777 495 96 0 43 chr4 51147746 51147861 -133140801 - SVA Other Other -612 774 665 1147 127 94 75 chr4 51147878 51148304 -133140358 - SVA Other Other -520 866 433 5431 71 36 54 chr4 51148361 51149188 -133139474 - SVA Other Other -518 868 57 366 23 0 0 chr4 51149188 51149231 -133139431 + (GGGAGA)n Simple_repeat Simple_repeat 1 43 0 13959 52 1 1 chr4 51149232 51150942 -133137720 - L1P LINE L1 -1012 5134 3424 2238 94 3 10 chr4 51151080 51151389 -133137273 - AluSc SINE Alu -2 307 1 854 182 12 24 chr4 51151389 51151554 -133137108 + AluJb SINE Alu 117 279 -33 2047 138 0 0 chr4 51152358 51152649 -133136013 - AluJb SINE Alu -21 291 1 1109 152 35 113 chr4 51153127 51153232 -133135430 - MLT1B LTR MaLR 0 390 278 1690 85 36 5 chr4 51153232 51153455 -133135207 + MER30 DNA MER1_type 1 230 0 1109 152 35 113 chr4 51153455 51153642 -133135020 - MLT1B LTR MaLR -112 278 130 3732 177 13 81 chr4 51153647 51154152 -133134510 - L1PB1 LINE L1 -12 6139 5602 717 135 0 0 chr4 51154152 51154256 -133134406 - U13 snRNA snRNA 0 104 1 3732 177 13 81 chr4 51154256 51154636 -133134026 - L1PB1 LINE L1 -549 5602 5362 2127 92 13 32 chr4 51154636 51154872 -133133790 - L1MA2 LINE L1 0 6304 6074 1737 169 3 35 chr4 51154872 51155186 -133133476 - AluJb SINE Alu -8 304 1 2127 92 13 32 chr4 51155186 51155265 -133133397 - L1MA2 LINE L1 -230 6074 5995 3732 177 13 81 chr4 51155265 51155685 -133132977 - L1PB1 LINE L1 -789 5362 4915 702 184 7 21 chr4 51155685 51155826 -133132836 - MLT1B LTR MaLR -251 139 1 1281 255 129 29 chr4 51156651 51157467 -133131195 - L2 LINE L2 0 3313 2428 372 138 0 0 chr4 51157636 51157701 -133130961 + (TTCA)n Simple_repeat Simple_repeat 2 66 0 181 241 37 19 chr4 51158142 51158196 -133130466 - L2 LINE L2 -609 2705 2651 3668 184 63 11 chr4 51158476 51159284 -133129378 - MER45R DNA AcHobo -47 1534 685 732 65 0 0 chr4 51159291 51159383 -133129279 + L1PA4 LINE L1 1 92 -6054 38306 45 9 3 chr4 51159383 51164887 -133123775 + L1PA4 LINE L1 617 6154 -1 5119 191 29 30 chr4 51165539 51165923 -133122739 + Charlie1a DNA MER1_type 108 491 -2270 2281 167 3 19 chr4 51165923 51166294 -133122368 - MLT1A1 LTR MaLR 0 365 1 5119 191 29 30 chr4 51166294 51167057 -133121605 + Charlie1a DNA MER1_type 491 1253 -202 2669 205 26 48 chr4 51167061 51167749 -133120913 - L1ME1 LINE L1 -5 6161 5489 499 168 37 0 chr4 51167891 51167929 -133120733 - L1ME1 LINE L1 -761 5405 5370 1634 229 58 32 chr4 51167929 51168361 -133120301 - LTR47B LTR ERVL 0 443 1 499 168 37 0 chr4 51168361 51168463 -133120199 - L1ME1 LINE L1 -796 5370 5301 15085 172 35 18 chr4 51168467 51169318 -133119344 - L1MA4A LINE L1 -11 6994 6158 750 126 29 0 chr4 51169318 51169421 -133119241 - U6 snRNA snRNA -1 106 1 15085 172 35 18 chr4 51169421 51169714 -133118948 - L1MA4A LINE L1 -847 6158 5871 2189 142 47 33 chr4 51169714 51170073 -133118589 - THE1B LTR MaLR 0 364 1 15085 172 35 18 chr4 51170073 51170533 -133118129 - L1MA4A LINE L1 -1134 5871 5420 1904 81 100 8 chr4 51170533 51170793 -133117869 - AluSq SINE Alu -29 284 1 15085 172 35 18 chr4 51170793 51173426 -133115236 - L1MA4A LINE L1 -1585 5420 2688 1136 101 9 12 chr4 51173432 51173581 -133115081 + (TTCC)n Simple_repeat Simple_repeat 1 149 -391 2483 70 0 0 chr4 51173581 51173883 -133114779 - AluY SINE Alu -9 302 1 1136 101 9 12 chr4 51173883 51173974 -133114688 + (TTCC)n Simple_repeat Simple_repeat 149 540 0 905 40 52 29 chr4 51173979 51174152 -133114510 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 2149 246 70 71 chr4 51174170 51175173 -133113489 - L1M4 LINE L1 -5536 1006 5 1244 224 93 26 chr4 51175175 51175212 -133113450 - L1MEc LINE L1 -2982 3233 3200 2196 159 3 3 chr4 51175212 51175577 -133113085 - MER47A DNA MER2_type 0 366 2 1244 224 93 26 chr4 51175577 51176034 -133112628 - L1MEc LINE L1 -3015 3200 2706 2369 258 71 22 chr4 51176043 51177052 -133111610 - L1MEc LINE L1 -4024 2372 1314 1909 256 18 7 chr4 51177059 51177618 -133111044 - L1MEc LINE L1 -5472 924 360 1088 134 0 27 chr4 51177619 51177805 -133110857 + MER1B DNA MER1_type 1 181 -116 347 213 11 43 chr4 51177802 51177896 -133110766 + MER1B DNA MER1_type 243 333 0 * 263 232 145 0 chr4 51177896 51177965 -133110697 - L1MEc LINE L1 -6033 363 285 347 175 0 0 chr4 51178014 51178077 -133110585 + MER58 DNA MER1_type 2355 2417 -3 621 217 0 81 chr4 51178078 51178276 -133110386 - L1MEc LINE L1 -6171 225 44 635 137 33 38 chr4 51178287 51178470 -133110192 + Charlie1a DNA MER1_type 1233 1414 -41 22 0 0 0 chr4 51178475 51178497 -133110165 + AT_rich Low_complexity Low_complexity 1 22 0 860 114 0 0 chr4 51178497 51178611 -133110051 - AluSc SINE Alu -24 285 172 3002 180 41 2 chr4 51178617 51179228 -133109434 - L1MC2 LINE L1 -21 6323 5689 446 355 12 83 chr4 51179375 51179699 -133108963 - L2 LINE L2 -4 3268 2968 290 237 21 41 chr4 51179764 51179861 -133108801 + CT-rich Low_complexity Low_complexity 5 99 0 977 201 170 61 chr4 51179934 51180263 -133108399 - MSTD LTR MaLR 0 396 1 394 244 101 12 chr4 51181267 51181435 -133107227 + L1M4 LINE L1 2401 2583 -3563 * 757 235 21 51 chr4 51181423 51181657 -133107005 + L1ME2 LINE L1 5935 6161 -3 989 298 56 20 chr4 51181677 51182019 -133106643 - L2 LINE L2 -957 2357 2004 11747 30 4 2 chr4 51182019 51183799 -133104863 - L1PA3 LINE L1 -470 5685 3902 3742 46 0 0 chr4 51183799 51184250 -133104412 + L1PA3 LINE L1 5699 6155 0 557 268 80 36 chr4 51184250 51184474 -133104188 - L2 LINE L2 -1304 2010 1777 862 267 143 42 chr4 51185014 51185467 -133103195 - MLT1J LTR MaLR -7 504 6 1401 180 89 126 chr4 51185716 51186254 -133102408 + MLT2B1 LTR ERVL 1 518 -2 248 349 128 0 chr4 51186307 51186416 -133102246 - MIR3 SINE MIR -71 137 15 1434 198 16 0 chr4 51186802 51187110 -133101552 - L1MB7 LINE L1 -12 6172 5860 473 128 0 0 chr4 51187120 51187206 -133101456 - L1PB4 LINE L1 -3 6153 6068 4356 250 42 46 chr4 51187238 51189582 -133099080 - L1MB7 LINE L1 -314 5870 3540 306 280 125 6 chr4 51189598 51189766 -133098896 - LTR16A LTR ERVL -4 446 259 288 313 62 6 chr4 51190006 51190166 -133098496 - L1MEc LINE L1 -6194 202 34 21 0 0 0 chr4 51190405 51190426 -133098236 + AT_rich Low_complexity Low_complexity 1 21 0 1829 182 19 30 chr4 51190608 51190977 -133097685 - MLT1A1 LTR MaLR 0 365 1 514 200 0 0 chr4 51192171 51192261 -133096401 - Tigger7 DNA MER2_type -1 2486 2397 559 301 90 0 chr4 51192593 51192808 -133095854 - MIR SINE MIR 0 262 31 321 292 54 23 chr4 51193060 51193190 -133095472 + L1ME LINE L1 58 191 -5879 29 0 0 0 chr4 51193190 51193219 -133095443 + AT_rich Low_complexity Low_complexity 1 29 0 629 156 64 9 chr4 51193219 51193328 -133095334 - FLAM_C SINE Alu -24 119 5 318 297 74 20 chr4 51193784 51193932 -133094730 + L1ME LINE L1 320 475 -5595 897 282 19 39 chr4 51193981 51194523 -133094139 + L1ME LINE L1 448 978 -5105 1531 283 44 8 chr4 51194544 51195163 -133093499 + L1ME LINE L1 2889 3529 -2551 201 237 0 0 chr4 51195215 51195253 -133093409 + polypurine Low_complexity Low_complexity 3 40 0 627 216 7 8 chr4 51195255 51195437 -133093225 + L1M4 LINE L1 4648 4828 -1318 472 280 13 7 chr4 51195443 51195593 -133093069 + L1ME LINE L1 3652 3802 -2278 264 304 13 0 chr4 51195616 51195695 -133092967 - L2 LINE L2 0 3313 3234 7177 53 0 0 chr4 51195782 51196809 -133091853 - L1PA5 LINE L1 -8 6146 5118 744 178 0 20 chr4 51196809 51196821 -133091841 - L1P5 LINE L1 -661 5493 5482 616 220 110 107 chr4 51196821 51197121 -133091541 - AluJo SINE Alu -1 301 1 744 178 0 20 chr4 51197121 51197292 -133091370 - L1P5 LINE L1 -672 5482 5317 6781 62 5 43 chr4 51197326 51198318 -133090344 - SVA Other Other 0 1386 433 29 0 0 0 chr4 51198659 51198688 -133089974 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 51198899 51198921 -133089741 + AT_rich Low_complexity Low_complexity 1 22 0 351 0 0 0 chr4 51199030 51199069 -133089593 + (T)n Simple_repeat Simple_repeat 1 39 0 13501 134 9 24 chr4 51199069 51199334 -133089328 - L1P LINE L1 -3825 2321 2054 2296 104 7 0 chr4 51199334 51199643 -133089019 - AluY SINE Alu 0 311 1 13501 134 9 24 chr4 51199643 51201722 -133086940 - L1P LINE L1 -4092 2054 11 1450 157 93 19 chr4 51201753 51201920 -133086742 - AluJo SINE Alu -4 308 112 198 0 0 0 chr4 51201920 51201942 -133086720 + (TTTTA)n Simple_repeat Simple_repeat 1 22 0 1450 157 93 19 chr4 51201942 51202042 -133086620 - AluJo SINE Alu -200 112 21 180 0 0 0 chr4 51202061 51202081 -133086581 + (A)n Simple_repeat Simple_repeat 1 20 0 261 221 191 0 chr4 51202173 51202241 -133086421 - MIR SINE MIR -65 197 117 230 282 24 35 chr4 51202297 51202382 -133086280 - MIR SINE MIR -133 129 46 246 313 31 0 chr4 51202589 51202685 -133085977 + MER5A DNA MER1_type 14 112 -77 191 62 31 31 chr4 51202677 51202709 -133085953 - MER5A DNA MER1_type -114 75 44 * 328 283 47 19 chr4 51203430 51203536 -133085126 - MIR3 SINE MIR -17 191 83 38 22 0 0 chr4 51204397 51204442 -133084220 + AT_rich Low_complexity Low_complexity 1 45 0 816 137 8 0 chr4 51204448 51204565 -133084097 - FLAM_C SINE Alu -15 118 1 2192 217 54 104 chr4 51204787 51205199 -133083463 - L1ME3 LINE L1 -50 6112 5681 1907 132 30 46 chr4 51205199 51205502 -133083160 + AluSx SINE Alu 1 298 -14 2192 217 54 104 chr4 51205502 51205989 -133082673 - L1ME3 LINE L1 -481 5681 5315 998 172 4 38 chr4 51205989 51206227 -133082435 - L1MA4 LINE L1 -1 6299 6070 2192 217 54 104 chr4 51206227 51206700 -133081962 - L1ME3 LINE L1 -847 5315 4820 1940 101 109 0 chr4 51207066 51207342 -133081320 + AluSg SINE Alu 1 306 -4 398 82 0 14 chr4 51207681 51207735 -133080927 - THE1B LTR MaLR 0 364 306 9687 31 1 0 chr4 51207735 51209663 -133078999 + L1PA3 LINE L1 4226 6155 0 2271 101 0 12 chr4 51209693 51210020 -133078642 - THE1B LTR MaLR -41 323 1 745 192 0 0 chr4 51210260 51210385 -133078277 + FLAM_C SINE Alu 1 125 -18 608 249 8 100 chr4 51211303 51211552 -133077110 + MIR SINE MIR 23 248 -14 2470 197 71 32 chr4 51211762 51212341 -133076321 + LTR23-int LTR ERV1 1178 1800 -3323 2228 118 7 0 chr4 51212341 51212637 -133076025 + AluSx SINE Alu 1 298 -14 2470 197 71 32 chr4 51212637 51212871 -133075791 + LTR23-int LTR ERV1 1800 2023 -3100 388 111 74 25 chr4 51212881 51212962 -133075700 + MER4B LTR ERV1 1 85 -525 2263 112 10 0 chr4 51213002 51213306 -133075356 + AluSx SINE Alu 3 309 -3 256 117 17 33 chr4 51213326 51213386 -133075276 + A-rich Low_complexity Low_complexity 3 61 0 2011 111 4 4 chr4 51213549 51213868 -133074794 + AluSc SINE Alu 1 319 0 304 288 59 17 chr4 51214834 51214952 -133073710 - L1ME4a LINE L1 -11 6110 5988 252 0 0 0 chr4 51214963 51214991 -133073671 + (CA)n Simple_repeat Simple_repeat 1 28 0 231 153 20 41 chr4 51215002 51215100 -133073562 + (TA)n Simple_repeat Simple_repeat 1 96 0 181 297 77 11 chr4 51215237 51215328 -133073334 - L2 LINE L2 -264 3008 2912 531 195 208 13 chr4 51215337 51215491 -133073171 - MER5A DNA MER1_type -2 187 4 828 194 29 0 chr4 51215543 51215718 -133072944 - FRAM SINE Alu -4 172 1 2714 214 16 22 chr4 51215822 51216508 -133072154 + LTR23-int LTR ERV1 4442 5123 0 921 146 17 28 chr4 51216509 51216687 -133071975 + LTR23 LTR ERV1 1 176 -261 2063 114 0 7 chr4 51216687 51216992 -133071670 - AluSg SINE Alu 0 303 1 1073 110 0 0 chr4 51216992 51217128 -133071534 - AluSq/x SINE Alu -176 136 1 712 100 14 36 chr4 51217129 51217269 -133071393 + LTR23 LTR ERV1 167 303 -134 22 0 0 0 chr4 51217294 51217316 -133071346 + AT_rich Low_complexity Low_complexity 1 22 0 1511 161 40 25 chr4 51217329 51217603 -133071059 + AluJo SINE Alu 26 303 -9 655 143 4 11 chr4 51217604 51217744 -133070918 + LTR56 LTR ERV1 298 437 0 357 62 0 0 chr4 51217744 51217792 -133070870 + (CA)n Simple_repeat Simple_repeat 2 49 0 192 77 0 0 chr4 51218102 51218128 -133070534 + (T)n Simple_repeat Simple_repeat 1 26 0 1193 214 38 70 chr4 51218575 51218627 -133070035 + MER74A LTR ERVL 20 72 -486 2073 140 0 6 chr4 51218627 51218941 -133069721 + AluSx SINE Alu 1 312 0 1193 214 38 70 chr4 51218941 51219229 -133069433 + MER74A LTR ERVL 72 349 -209 2272 96 3 0 chr4 51219436 51219728 -133068934 + AluSp SINE Alu 1 293 -20 1252 170 0 46 chr4 51220531 51220772 -133067890 - AluJo SINE Alu -7 305 76 1720 226 18 38 chr4 51220889 51221393 -133067269 - L1ME LINE L1 -359 5811 5318 353 307 27 67 chr4 51221423 51221648 -133067014 - L1MC4 LINE L1 -1 8041 7826 1725 193 21 10 chr4 51221679 51222068 -133066594 - L1ME2 LINE L1 -10 6154 5762 735 198 5 40 chr4 51222077 51222279 -133066383 - L1MA10 LINE L1 -2 6332 6138 1002 136 24 0 chr4 51222279 51222445 -133066217 + L1PA16 LINE L1 5994 6166 0 713 187 0 7 chr4 51222948 51223087 -133065575 + FLAM_C SINE Alu 6 143 0 420 269 45 0 chr4 51225138 51225294 -133063368 - MIR SINE MIR -31 231 69 370 246 0 0 chr4 51225441 51225510 -133063152 + L2 LINE L2 3223 3291 -22 306 206 27 14 chr4 51225535 51225608 -133063054 - L1MCa LINE L1 -4358 2068 1995 308 253 72 0 chr4 51225608 51225691 -133062971 - L1MC4 LINE L1 -1339 6703 6615 213 231 0 0 chr4 51225691 51225730 -133062932 + (CATATA)n Simple_repeat Simple_repeat 1 39 0 234 218 62 88 chr4 51225730 51225802 -133062860 - L1MCa LINE L1 -4359 2067 1995 2212 95 14 0 chr4 51225802 51226086 -133062576 - AluSq SINE Alu -25 288 1 234 218 62 88 chr4 51226086 51226206 -133062456 - L1MCa LINE L1 -4431 1995 1880 311 308 58 36 chr4 51226323 51226581 -133062081 - L2 LINE L2 -263 3050 2702 2100 121 13 0 chr4 51226594 51226899 -133061763 - AluY SINE Alu -2 309 1 1013 94 0 7 chr4 51226899 51227037 -133061625 - AluSq/x SINE Alu -176 137 1 835 335 100 11 chr4 51227038 51227497 -133061165 - L2 LINE L2 -588 2726 2227 1067 222 30 52 chr4 51227498 51227842 -133060820 - MLT2D LTR ERVL -119 295 1 413 192 169 15 chr4 51228223 51228353 -133060309 - L1MD2 LINE L1 -10 6349 6200 343 243 48 29 chr4 51228355 51228458 -133060204 - L1MD2 LINE L1 -210 6149 6045 212 184 0 0 chr4 51229004 51229042 -133059620 + (TA)n Simple_repeat Simple_repeat 2 39 0 1700 186 42 109 chr4 51229055 51229561 -133059101 + L1MC4a LINE L1 6296 6767 -1041 25964 52 8 2 chr4 51229661 51233433 -133055229 + L1PA5 LINE L1 2093 5883 -271 1772 154 13 27 chr4 51233746 51234045 -133054617 + AluJb SINE Alu 5 299 -13 2299 105 0 0 chr4 51234249 51234545 -133054117 + AluSc SINE Alu 3 298 -11 240 122 0 0 chr4 51235301 51235342 -133053320 + (TG)n Simple_repeat Simple_repeat 1 41 0 24 53 0 0 chr4 51236248 51236286 -133052376 + AT_rich Low_complexity Low_complexity 1 38 0 2286 75 4 0 chr4 51236346 51236627 -133052035 + AluY SINE Alu 22 303 -8 1802 171 4 4 chr4 51236638 51236919 -133051743 + AluJo SINE Alu 1 281 -31 198 0 0 0 chr4 51236925 51236947 -133051715 + (TAA)n Simple_repeat Simple_repeat 1 22 0 653 244 207 57 chr4 51236988 51237446 -133051216 - L1ME4a LINE L1 -74 6047 5521 228 258 30 15 chr4 51237470 51237536 -133051126 + MIR SINE MIR 48 114 -148 810 70 0 0 chr4 51237564 51237664 -133050998 - HY3 scRNA scRNA 0 101 2 397 270 88 0 chr4 51237668 51237805 -133050857 + MIR SINE MIR 100 248 -14 252 100 0 0 chr4 51237813 51237853 -133050809 + (CAT)n Simple_repeat Simple_repeat 2 41 0 678 204 7 20 chr4 51237889 51238036 -133050626 - L2 LINE L2 -1 3312 3168 782 199 64 13 chr4 51238051 51238207 -133050455 + AluJo SINE Alu 122 285 -27 264 30 0 0 chr4 51238207 51238240 -133050422 + (CA)n Simple_repeat Simple_repeat 2 34 0 936 205 214 36 chr4 51238245 51238582 -133050080 - L2 LINE L2 -718 2596 2200 1350 171 41 12 chr4 51238595 51238840 -133049822 - MLT1A1 LTR MaLR -12 353 102 2344 97 0 0 chr4 51238875 51239165 -133049497 - AluSg SINE Alu -20 290 1 23453 71 18 8 chr4 51239269 51243450 -133045212 + L1PA6 LINE L1 2116 6154 0 573 115 0 0 chr4 51243450 51243537 -133045125 + (GGAA)n Simple_repeat Simple_repeat 2 88 0 1923 168 31 49 chr4 51243686 51244073 -133044589 + MLT1B LTR MaLR 1 380 -10 24 32 0 0 chr4 51244183 51244214 -133044448 + AT_rich Low_complexity Low_complexity 1 31 0 1806 185 174 39 chr4 51244432 51244869 -133043793 + MLT1D LTR MaLR 2 497 -8 180 77 0 0 chr4 51244951 51244977 -133043685 + (TTTTTG)n Simple_repeat Simple_repeat 1 26 0 255 333 31 16 chr4 51245348 51245477 -133043185 + MIR SINE MIR 132 262 0 570 307 12 62 chr4 51246032 51246289 -133042373 + MIR SINE MIR 16 259 -3 402 333 162 41 chr4 51246294 51246831 -133041831 + L2 LINE L2 2033 2634 -680 2096 114 4 0 chr4 51247367 51247679 -133040983 - AluSp SINE Alu 0 313 1 7123 86 4 4 chr4 51248361 51250179 -133038483 + L1PA11 LINE L1 4347 6165 -9 512 184 28 22 chr4 51250181 51250360 -133038302 + (TA)n Simple_repeat Simple_repeat 1 180 0 540 223 69 27 chr4 51250689 51250877 -133037785 + MLT1J2 LTR MaLR 6 201 -249 494 234 81 86 chr4 51250878 51251087 -133037575 + MLT1J1 LTR MaLR 239 446 0 209 311 0 0 chr4 51252405 51252479 -133036183 + GA-rich Low_complexity Low_complexity 4 77 0 43932 33 22 1 chr4 51253299 51259321 -133029341 + L1HS LINE L1 3 6155 0 1632 171 11 14 chr4 51259469 51259756 -133028906 + AluJo SINE Alu 1 286 -26 424 81 27 0 chr4 51259856 51259930 -133028732 + (TC)n Simple_repeat Simple_repeat 2 77 0 783 155 78 28 chr4 51259933 51260075 -133028587 - FRAM SINE Alu -27 149 1 257 298 12 24 chr4 51260635 51260719 -133027943 - MIR3 SINE MIR -5 203 121 1124 192 11 49 chr4 51260886 51261152 -133027510 - MER33 DNA MER1_type -68 256 1 2279 115 3 0 chr4 51262306 51262618 -133026044 + AluSq SINE Alu 1 313 0 1025 153 25 0 chr4 51262633 51262790 -133025872 + AluSg/x SINE Alu 120 280 -32 430 247 58 72 chr4 51262823 51262846 -133025816 - MIR SINE MIR -42 220 198 2661 169 33 7 chr4 51262846 51263301 -133025361 - MLT1C LTR MaLR 0 467 1 430 247 58 72 chr4 51263301 51263420 -133025242 - MIR SINE MIR -64 198 80 2553 117 31 14 chr4 51263420 51263778 -133024884 - THE1B LTR MaLR 0 364 1 430 247 58 72 chr4 51263778 51263857 -133024805 - MIR SINE MIR -182 80 1 424 333 30 6 chr4 51263857 51264004 -133024658 - MIR SINE MIR -106 156 6 302 217 33 0 chr4 51264884 51264944 -133023718 + L2 LINE L2 3200 3261 -52 331 231 83 9 chr4 51264956 51265064 -133023598 - L1MC4a LINE L1 -1840 5968 5853 513 218 113 8 chr4 51265941 51266074 -133022588 + L2 LINE L2 3167 3313 0 2898 176 24 0 chr4 51266196 51266656 -133022006 - MER70A LTR ERVL -1 471 1 2326 214 207 16 chr4 51266934 51267610 -133021052 + MER21B LTR ERV1 5 809 -54 2097 233 39 2 chr4 51267624 51268092 -133020570 - MLT1F LTR MaLR -54 488 4 339 210 0 0 chr4 51268827 51268889 -133019773 - L2 LINE L2 -1 3312 3251 390 281 83 97 chr4 51268902 51269180 -133019482 + L2 LINE L2 3008 3281 -32 260 277 128 0 chr4 51269180 51269274 -133019388 + MER21B LTR ERV1 704 809 -54 377 188 0 0 chr4 51269293 51269362 -133019300 - MLT1F LTR MaLR -54 488 420 249 33 0 0 chr4 51269468 51269498 -133019164 + (TC)n Simple_repeat Simple_repeat 1 30 0 739 208 86 25 chr4 51270477 51270537 -133018125 - MER3 DNA MER1_type 0 209 154 4085 67 6 0 chr4 51270537 51271030 -133017632 - L1PA5 LINE L1 -8 6146 5651 739 208 86 25 chr4 51271030 51271166 -133017496 - MER3 DNA MER1_type -55 154 1 693 256 93 93 chr4 51271530 51272009 -133016653 + MLT1G1 LTR MaLR 1 442 -148 853 267 89 49 chr4 51272138 51272543 -133016119 - MLT1L LTR MaLR 0 615 195 242 28 0 28 chr4 51272900 51272936 -133015726 + (CA)n Simple_repeat Simple_repeat 2 36 0 2428 94 0 0 chr4 51273040 51273348 -133015314 - AluSc SINE Alu -1 308 1 1580 199 101 18 chr4 51273435 51273772 -133014890 - MLT1A1 LTR MaLR 0 365 1 1016 96 0 0 chr4 51274856 51274992 -133013670 + MLT2D LTR ERVL 3 138 -276 1743 123 68 89 chr4 51274992 51275018 -133013644 - THE1C LTR MaLR 0 375 350 384 177 25 13 chr4 51275018 51275097 -133013565 + MADE1 DNA Mariner 1 80 0 1743 123 68 89 chr4 51275097 51275453 -133013209 - THE1C LTR MaLR -25 350 1 967 174 43 110 chr4 51275453 51275751 -133012911 + MLT2D LTR ERVL 134 411 -3 372 103 0 0 chr4 51275751 51275809 -133012853 + (CA)n Simple_repeat Simple_repeat 2 59 0 1078 249 35 57 chr4 51276005 51276406 -133012256 + LTR16A LTR ERVL 56 447 -3 2346 90 7 0 chr4 51276616 51276915 -133011747 - AluSq SINE Alu -12 301 1 244 122 24 0 chr4 51277151 51277192 -133011470 + MADE1 DNA Mariner 1 42 -38 331 276 224 19 chr4 51277218 51277482 -133011180 + L2 LINE L2 2951 3268 -4 338 339 17 76 chr4 51277548 51277784 -133010878 - L3 LINE CR1 -154 1423 1202 1180 185 189 0 chr4 51278117 51278392 -133010270 + AluJo SINE Alu 1 223 -330 975 121 11 22 chr4 51278392 51278574 -133010088 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1180 185 189 0 chr4 51278574 51278622 -133010040 + AluJo SINE Alu 223 553 0 482 285 53 33 chr4 51278629 51278780 -133009882 + L2 LINE L2 3103 3256 -16 2257 102 0 10 chr4 51279667 51279970 -133008692 - AluSq SINE Alu -13 300 1 227 253 95 70 chr4 51280039 51280197 -133008465 - HAL1 LINE L1 -1728 779 618 356 290 0 40 chr4 51280882 51280982 -133007680 - L2 LINE L2 -30 3283 3188 236 125 62 21 chr4 51281465 51281513 -133007149 + LTR24B LTR ERV1 70 119 -457 * 1239 194 29 56 chr4 51281508 51281848 -133006814 + LTR24B LTR ERV1 244 574 -2 407 291 56 114 chr4 51282102 51282655 -133006007 + MLT1K LTR MaLR 66 586 -2 285 29 0 0 chr4 51283806 51283840 -133004822 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 274 216 97 3 chr4 51283864 51283960 -133004702 - MLT1J1 LTR MaLR -16 415 316 807 255 42 19 chr4 51283975 51284234 -133004428 - MLT1J2 LTR MaLR -184 266 2 366 238 20 20 chr4 51284339 51284440 -133004222 - MIR SINE MIR -46 216 116 297 323 10 0 chr4 51284505 51284604 -133004058 + MIR SINE MIR 2 101 -161 342 259 48 88 chr4 51284762 51284909 -133003753 - MIR SINE MIR -70 192 52 1023 201 170 18 chr4 51284937 51285220 -133003442 - LTR16C LTR ERVL -2 489 164 260 211 122 44 chr4 51285555 51285645 -133003017 + MIR SINE MIR 89 185 -77 366 255 0 64 chr4 51285654 51285748 -133002914 + L2 LINE L2 3149 3236 -36 207 161 0 0 chr4 51285772 51285803 -133002859 + polypurine Low_complexity Low_complexity 4 34 0 196 271 0 0 chr4 51285835 51285883 -133002779 + L2 LINE L2 3213 3260 -12 216 0 0 0 chr4 51286401 51286425 -133002237 + (T)n Simple_repeat Simple_repeat 1 24 0 448 163 50 0 chr4 51286484 51286564 -133002098 - L2 LINE L2 0 3272 3189 2130 195 11 0 chr4 51286756 51287115 -133001547 - MLT1A1 LTR MaLR -2 363 1 209 235 176 0 chr4 51287285 51287353 -133001309 - MIR SINE MIR -85 123 44 286 242 141 10 chr4 51287385 51287484 -133001178 - L2 LINE L2 -2 3311 3200 * 459 328 150 11 chr4 51287460 51287747 -133000915 - L2 LINE L2 -508 2806 2480 1260 198 82 80 chr4 51287766 51288130 -133000532 + MLT1A1 LTR MaLR 1 365 0 1993 199 32 44 chr4 51288430 51288903 -132999759 - MLT1C LTR MaLR 0 467 1 922 211 51 34 chr4 51289411 51289648 -132999014 - MIR SINE MIR -16 246 6 2001 94 66 25 chr4 51289853 51290171 -132998491 + L1MA3 LINE L1 5966 6296 -9 555 132 0 0 chr4 51290338 51290429 -132998233 + (GGGGA)n Simple_repeat Simple_repeat 5 95 0 1085 149 0 6 chr4 51290482 51290643 -132998019 + AluJb SINE Alu 129 288 -24 267 261 127 8 chr4 51290722 51290856 -132997806 + L1ME3 LINE L1 5931 6080 -82 338 326 76 29 chr4 51290993 51291165 -132997497 + HAL1 LINE L1 2326 2505 -2 1491 175 10 23 chr4 51291178 51291308 -132997354 + L1MD3 LINE L1 7690 7820 -175 2164 134 27 48 chr4 51291308 51291680 -132996982 - THE1B LTR MaLR 0 364 1 1491 175 10 23 chr4 51291680 51291852 -132996810 + L1MD3 LINE L1 7820 7988 -7 687 144 63 0 chr4 51291857 51291968 -132996694 + MLT1A1 LTR MaLR 171 288 -77 21 82 0 0 chr4 51292204 51292253 -132996409 + AT_rich Low_complexity Low_complexity 1 49 0 273 57 0 0 chr4 51292291 51292326 -132996336 + (CA)n Simple_repeat Simple_repeat 2 36 0 200 299 23 23 chr4 51292588 51292675 -132995987 - L2 LINE L2 -350 2922 2836 1857 212 64 41 chr4 51292818 51293384 -132995278 + L1MC4 LINE L1 7464 8042 0 211 281 34 34 chr4 51293429 51293518 -132995144 - L2 LINE L2 -706 2608 2520 1815 151 26 30 chr4 51294966 51295270 -132993392 - AluJb SINE Alu -9 303 1 2099 119 0 3 chr4 51295337 51295623 -132993039 - AluSx SINE Alu -22 290 6 27 49 0 0 chr4 51295701 51295742 -132992920 + AT_rich Low_complexity Low_complexity 1 41 0 766 221 121 43 chr4 51297095 51297326 -132991336 - MIR SINE MIR -8 254 6 400 261 58 51 chr4 51297468 51297606 -132991056 + MIR SINE MIR 113 251 -11 4946 155 55 15 chr4 51298745 51298909 -132989753 + L1MA9 LINE L1 5360 5516 -796 1537 218 99 11 chr4 51298909 51299272 -132989390 + MSTD LTR MaLR 1 395 -1 4946 155 55 15 chr4 51299272 51299531 -132989131 + L1MA9 LINE L1 5516 5763 -549 408 88 0 0 chr4 51299531 51299588 -132989074 + (TA)n Simple_repeat Simple_repeat 2 58 0 4946 155 55 15 chr4 51299588 51300080 -132988582 + L1MA9 LINE L1 5763 6312 0 211 287 46 23 chr4 51300495 51300582 -132988080 + MIR3 SINE MIR 111 199 -9 356 200 87 52 chr4 51301168 51301283 -132987379 + L1MC5 LINE L1 7811 7929 -32 1967 141 0 7 chr4 51301507 51301804 -132986858 - AluJb SINE Alu -17 295 1 462 114 0 14 chr4 51302309 51302379 -132986283 + LTR24B LTR ERV1 9 77 -499 635 241 96 47 chr4 51302434 51302776 -132985886 + LTR24 LTR ERV1 161 466 -1 1664 231 105 9 chr4 51303852 51304405 -132984257 - MER90 LTR ERV1 -8 606 1 728 141 63 14 chr4 51305197 51305339 -132983323 + MER4C LTR ERV1 1 149 -316 340 189 221 74 chr4 51305339 51305461 -132983201 + MER4A LTR ERV1 238 377 -220 * 1261 149 27 131 chr4 51305429 51305765 -132982897 + MER4C LTR ERV1 165 465 0 271 303 73 9 chr4 51307079 51307188 -132981474 + L2 LINE L2 3179 3294 -19 2259 116 119 38 chr4 51307297 51307473 -132981189 + MSTA LTR MaLR 1 161 -267 1973 140 38 0 chr4 51307473 51307766 -132980896 + AluSx SINE Alu 1 304 -8 2259 116 119 38 chr4 51307766 51307985 -132980677 + MSTA LTR MaLR 161 428 0 23 86 0 0 chr4 51313154 51313212 -132975450 + AT_rich Low_complexity Low_complexity 1 58 0 185 369 87 19 chr4 51313762 51313865 -132974797 - L2 LINE L2 -27 3245 3136 715 245 74 93 chr4 51313883 51314481 -132974181 - L2 LINE L2 -10 3303 2695 580 273 117 82 chr4 51314710 51315164 -132973498 + L2 LINE L2 2808 3277 -36 225 229 217 38 chr4 51316431 51316588 -132972074 - L1ME LINE L1 -201 5920 5736 462 254 33 8 chr4 51317450 51317572 -132971090 + MIR3 SINE MIR 34 158 -50 473 240 87 7 chr4 51317630 51317780 -132970882 - MER103 DNA DNA -2 164 3 2230 131 0 0 chr4 51318604 51318909 -132969753 - AluSx SINE Alu -7 305 1 198 274 48 0 chr4 51319039 51319101 -132969561 - MIR SINE MIR -16 246 182 342 175 18 0 chr4 51319141 51319198 -132969464 + L2 LINE L2 3215 3272 0 200 299 206 9 chr4 51320502 51320609 -132968053 - L2 LINE L2 0 3313 3186 486 269 283 16 chr4 51320717 51321085 -132967577 + L2 LINE L2 2848 3313 0 2638 101 28 8 chr4 51321238 51321594 -132967068 - THE1B LTR MaLR -1 363 1 2970 138 14 9 chr4 51322478 51322904 -132965758 + MSTA LTR MaLR 1 428 0 684 100 0 0 chr4 51322905 51322995 -132965667 + HY1 scRNA scRNA 1 90 -22 231 114 0 0 chr4 51322995 51323030 -132965632 + (GGAA)n Simple_repeat Simple_repeat 1 35 0 643 160 10 146 chr4 51323490 51323696 -132964966 + MER5B DNA MER1_type 1 178 0 2753 23 3 0 chr4 51324839 51325149 -132963513 - AluY SINE Alu 0 311 1 2130 115 3 14 chr4 51326530 51326825 -132961837 + AluSx SINE Alu 1 292 -20 670 216 141 22 chr4 51326863 51327048 -132961614 + MIR SINE MIR 43 249 -13 741 241 122 66 chr4 51327274 51327792 -132960870 + MLT1H LTR MaLR 3 549 0 2709 252 105 42 chr4 51327887 51328367 -132960295 + L1ME4a LINE L1 29 477 -5603 2318 116 0 0 chr4 51328367 51328677 -132959985 + AluSg SINE Alu 1 310 0 2709 252 105 42 chr4 51328677 51330454 -132958208 + L1ME4a LINE L1 477 2422 -3658 1324 216 93 25 chr4 51330454 51330819 -132957843 + L1MB7 LINE L1 5795 6184 0 563 269 61 19 chr4 51330824 51331036 -132957626 + L1ME4a LINE L1 2409 2629 -3451 1068 219 33 0 chr4 51331039 51331249 -132957413 + MER20 DNA MER1_type 2 218 -1 290 132 19 0 chr4 51331249 51331302 -132957360 + CT-rich Low_complexity Low_complexity 1 54 0 2182 126 0 0 chr4 51331302 51331595 -132957067 - AluSx SINE Alu -16 296 4 1422 187 37 9 chr4 51331609 51331930 -132956732 + L1ME4a LINE L1 2623 2952 -3128 256 283 76 22 chr4 51331949 51332041 -132956621 + L2 LINE L2 3215 3311 -2 823 184 17 40 chr4 51333024 51333150 -132955512 + AluJo SINE Alu 1 123 -189 1952 135 0 4 chr4 51333150 51333424 -132955238 + AluSx SINE Alu 19 291 -21 823 184 17 40 chr4 51333424 51333471 -132955191 + AluJo SINE Alu 123 170 -142 180 0 0 0 chr4 51333498 51333518 -132955144 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 183 80 0 0 chr4 51334226 51334251 -132954411 + (A)n Simple_repeat Simple_repeat 1 25 0 568 276 29 0 chr4 51334601 51334775 -132953887 + L3 LINE CR1 1375 1553 -24 192 40 0 0 chr4 51335135 51335160 -132953502 + (CAA)n Simple_repeat Simple_repeat 2 26 0 1264 253 74 17 chr4 51335520 51335994 -132952668 + L1ME3A LINE L1 5456 5956 -214 385 232 156 33 chr4 51336023 51336299 -132952363 + L1ME4a LINE L1 3479 3788 -2292 2089 134 0 0 chr4 51336310 51336602 -132952060 + AluSx SINE Alu 12 303 -9 786 281 102 16 chr4 51336623 51336986 -132951676 + L1ME4a LINE L1 5492 5885 -219 524 334 138 22 chr4 51337427 51337949 -132950713 - L2 LINE L2 0 3313 2718 351 278 168 12 chr4 51338394 51338567 -132950095 + L1MEc LINE L1 2017 2216 -4180 2160 120 19 7 chr4 51338569 51338877 -132949785 + AluSx SINE Alu 1 312 0 317 216 118 20 chr4 51338919 51339021 -132949641 + L1MC5 LINE L1 7376 7487 -474 242 224 79 13 chr4 51339360 51339436 -132949226 + L1ME4a LINE L1 5943 6023 -32 1612 199 59 14 chr4 51339570 51339927 -132948735 + MLT1A2 LTR MaLR 2 374 0 906 247 60 4 chr4 51340077 51340312 -132948350 - MIR SINE MIR 0 262 15 2154 107 7 14 chr4 51341256 51341547 -132947115 - AluSc SINE Alu -20 289 1 654 283 28 28 chr4 51344624 51344875 -132943787 - MIR SINE MIR -6 256 6 2057 114 62 0 chr4 51345396 51345686 -132942976 + AluSx SINE Alu 1 308 -4 415 169 35 92 chr4 51346454 51346596 -132942066 - L2 LINE L2 0 3313 3180 2046 133 4 0 chr4 51346647 51346925 -132941737 + AluSx SINE Alu 1 279 -33 238 184 26 26 chr4 51346926 51347002 -132941660 + GA-rich Low_complexity Low_complexity 1 76 0 503 289 45 0 chr4 51347002 51347158 -132941504 - MIR SINE MIR -96 166 4 1724 143 42 29 chr4 51347462 51347770 -132940892 + AluJb SINE Alu 1 312 0 1064 55 24 18 chr4 51347796 51347961 -132940701 + (GAAA)n Simple_repeat Simple_repeat 4 169 0 273 109 0 0 chr4 51348797 51348843 -132939819 + (CACAG)n Simple_repeat Simple_repeat 1 46 0 189 271 34 0 chr4 51348866 51348925 -132939737 + L2 LINE L2 347 407 -2907 753 145 0 0 chr4 51349027 51349151 -132939511 - AluSc SINE Alu 0 309 186 2355 104 0 0 chr4 51349151 51349449 -132939213 + AluSq SINE Alu 1 298 -15 1646 82 0 0 chr4 51349549 51349745 -132938917 - AluSq SINE Alu -117 196 1 205 312 83 78 chr4 51349848 51350557 -132938105 + L2 LINE L2 660 1372 -1942 231 345 23 0 chr4 51350652 51350829 -132937833 + L2 LINE L2 1614 1794 -1520 293 211 167 58 chr4 51350829 51350985 -132937677 + L1MC5 LINE L1 7723 7895 -66 1950 185 66 62 chr4 51350999 51351446 -132937216 + MLT1D LTR MaLR 6 457 -48 2421 99 0 0 chr4 51351446 51351750 -132936912 + AluSg SINE Alu 1 304 -6 1950 185 66 62 chr4 51351750 51351800 -132936862 + MLT1D LTR MaLR 457 505 0 1904 156 7 7 chr4 51351829 51352130 -132936532 - AluJb SINE Alu -11 301 1 600 305 147 14 chr4 51352323 51352821 -132935841 + L2 LINE L2 2192 2755 -559 2550 166 44 34 chr4 51353034 51353534 -132935128 + MLT1D LTR MaLR 1 505 0 22 0 0 0 chr4 51353595 51353617 -132935045 + AT_rich Low_complexity Low_complexity 1 22 0 201 150 33 17 chr4 51353638 51353698 -132934964 + (TA)n Simple_repeat Simple_repeat 1 61 0 229 310 0 0 chr4 51353702 51353760 -132934902 + L2 LINE L2 3165 3222 -50 1419 267 41 28 chr4 51354298 51354725 -132933937 - MLT1J LTR MaLR -35 476 41 1629 180 0 27 chr4 51354725 51355025 -132933637 - AluJb SINE Alu -20 292 1 1419 267 41 28 chr4 51355025 51355058 -132933604 - MLT1J LTR MaLR -470 41 10 240 250 158 54 chr4 51355061 51355245 -132933417 + L1MC/D LINE L1 5697 5899 -1909 260 177 89 13 chr4 51355278 51355357 -132933305 - L2 LINE L2 -1 3271 3187 26 0 0 0 chr4 51355521 51355547 -132933115 + AT_rich Low_complexity Low_complexity 1 26 0 2032 127 3 20 chr4 51355552 51355844 -132932818 + AluSp SINE Alu 14 300 -13 247 206 0 0 chr4 51356725 51356782 -132931880 - MIR SINE MIR -71 137 87 770 281 49 9 chr4 51357263 51357487 -132931175 - MIR SINE MIR -28 234 2 387 268 123 76 chr4 51358172 51358361 -132930301 + L2 LINE L2 2956 3166 -106 911 255 23 5 chr4 51358361 51358577 -132930085 + MER58A DNA MER1_type 5 224 0 387 268 123 76 chr4 51358577 51358689 -132929973 + L2 LINE L2 3166 3271 -1 543 259 99 10 chr4 51358716 51358917 -132929745 - MIR SINE MIR -30 232 14 242 197 158 0 chr4 51359181 51359257 -132929405 - MIR SINE MIR -110 152 65 1908 125 86 13 chr4 51359426 51359739 -132928923 + MER1B DNA MER1_type 1 336 -1 189 0 0 0 chr4 51359759 51359780 -132928882 + (A)n Simple_repeat Simple_repeat 1 21 0 2245 103 0 3 chr4 51359797 51360097 -132928565 + AluSg SINE Alu 1 299 -11 1215 127 0 0 chr4 51360097 51360270 -132928392 + AluSg/x SINE Alu 134 306 -6 2032 139 128 8 chr4 51360753 51361135 -132927527 + MSTA LTR MaLR 1 428 0 721 213 111 13 chr4 51361506 51361741 -132926921 + MER5C DNA MER1_type 61 318 -6 1069 242 170 32 chr4 51361784 51362185 -132926477 + L1MC4a LINE L1 5370 5825 -1983 211 276 102 20 chr4 51362840 51362938 -132925724 - MIR SINE MIR -87 121 16 297 208 99 20 chr4 51363489 51363590 -132925072 - MER113 DNA MER1_type? -412 109 1 21 0 0 0 chr4 51363703 51363724 -132924938 + AT_rich Low_complexity Low_complexity 1 21 0 393 282 161 0 chr4 51364527 51364676 -132923986 + MER5A DNA MER1_type 9 181 -8 463 189 0 83 chr4 51364727 51364859 -132923803 - L2 LINE L2 -1 3312 3192 221 127 55 55 chr4 51364864 51364919 -132923743 - MER5B DNA MER1_type -2 176 122 544 322 50 18 chr4 51365033 51365375 -132923287 + L1ME3A LINE L1 5552 5904 -266 24 0 0 0 chr4 51365702 51365726 -132922936 + AT_rich Low_complexity Low_complexity 1 24 0 198 250 19 0 chr4 51365727 51365779 -132922883 - MER5B DNA MER1_type -125 53 1 2264 100 13 0 chr4 51365838 51366139 -132922523 + AluSc SINE Alu 1 305 -4 291 273 0 30 chr4 51366338 51366437 -132922225 + MER5A DNA MER1_type 50 145 -44 871 254 64 54 chr4 51367144 51367648 -132921014 + L1ME3A LINE L1 5374 5886 -284 251 309 41 24 chr4 51367770 51367893 -132920769 + L1ME3A LINE L1 5969 6093 -77 240 233 67 0 chr4 51367861 51367921 -132920741 + L1MC4 LINE L1 7964 8027 -15 * 2163 115 37 0 chr4 51368247 51368543 -132920119 + AluSq SINE Alu 1 307 -6 21 0 0 0 chr4 51369396 51369417 -132919245 + AT_rich Low_complexity Low_complexity 1 21 0 785 178 15 0 chr4 51369580 51369715 -132918947 - FLAM_C SINE Alu -5 138 2 263 272 73 88 chr4 51371691 51371782 -132916880 - MIR SINE MIR -108 154 64 1850 160 10 10 chr4 51371782 51372089 -132916573 + AluJb SINE Alu 2 308 -4 263 272 73 88 chr4 51372089 51372133 -132916529 - MIR SINE MIR -198 64 21 208 147 0 0 chr4 51373523 51373557 -132915105 - MIR SINE MIR -113 149 116 25 31 0 0 chr4 51374018 51374050 -132914612 + GC_rich Low_complexity Low_complexity 1 32 0 313 239 30 15 chr4 51374298 51374432 -132914230 + (CGGGG)n Simple_repeat Simple_repeat 2 137 0 21 0 0 0 chr4 51374481 51374502 -132914160 + GC_rich Low_complexity Low_complexity 1 21 0 654 151 0 126 chr4 51375678 51375697 -132912965 - FLAM_C SINE Alu 0 143 5 685 114 0 143 chr4 51375697 51375837 -132912825 - AluJo/FLAM SINE Alu -178 124 5 253 266 35 18 chr4 51375841 51375954 -132912708 - MIR SINE MIR -56 206 92 2009 173 81 66 chr4 51376739 51377161 -132911501 + MSTA LTR MaLR 1 428 0 8587 177 6 121 chr4 51377163 51378947 -132909715 + MSTA-int LTR MaLR 3 1651 0 2486 161 46 19 chr4 51378947 51379364 -132909298 + MSTA LTR MaLR 1 428 0 473 222 24 0 chr4 51379401 51379506 -132909156 + MER5A DNA MER1_type 4 111 -78 1423 266 144 12 chr4 51379556 51380064 -132908598 + MLT1K LTR MaLR 14 588 0 2303 196 57 2 chr4 51380140 51380544 -132908118 - MSTB LTR MaLR 0 426 1 769 230 191 0 chr4 51380902 51381111 -132907551 + MIR SINE MIR 14 262 0 523 158 0 0 chr4 51381213 51381289 -132907373 + AluJo SINE Alu 2 77 -235 574 190 19 13 chr4 51381298 51381456 -132907206 + GA-rich Low_complexity Low_complexity 1 159 0 287 235 0 0 chr4 51381456 51381507 -132907155 + polypurine Low_complexity Low_complexity 1 51 0 289 267 0 0 chr4 51381847 51381907 -132906755 - L2 LINE L2 -3 3310 3251 721 208 0 16 chr4 51382127 51382252 -132906410 + FLAM_A SINE Alu 1 123 -10 617 324 61 98 chr4 51382459 51383054 -132905608 - L2 LINE L2 -675 2639 2074 1834 145 0 34 chr4 51383054 51383351 -132905311 + AluJo SINE Alu 1 287 -25 617 324 61 98 chr4 51383351 51383480 -132905182 - L2 LINE L2 -1240 2074 1942 202 240 20 0 chr4 51383526 51383576 -132905086 - MIR SINE MIR -72 190 140 1415 161 4 37 chr4 51383580 51383822 -132904840 + AluJo SINE Alu 57 290 -22 225 255 20 0 chr4 51384253 51384304 -132904358 + L2 LINE L2 2999 3050 -222 307 235 118 0 chr4 51384951 51385036 -132903626 + L2 LINE L2 3214 3308 -5 2607 147 71 0 chr4 51385091 51385512 -132903150 - LTR47A LTR ERVL -1 451 1 800 218 48 74 chr4 51386468 51386739 -132901923 - L1ME3A LINE L1 0 6170 5907 1290 175 28 28 chr4 51386747 51386835 -132901827 + AluSx SINE Alu 22 109 -203 216 0 0 0 chr4 51386835 51386859 -132901803 + (TA)n Simple_repeat Simple_repeat 2 25 0 2021 109 33 0 chr4 51386859 51387135 -132901527 + AluSx SINE Alu 2 286 -26 1290 175 28 28 chr4 51387135 51387149 -132901513 + AluSx SINE Alu 108 121 -191 754 182 15 15 chr4 51387149 51387281 -132901381 + FLAM_C SINE Alu 1 132 -1 9601 48 1 2 chr4 51387282 51388354 -132900308 - MER11C LTR ERVK 0 1071 1 1290 175 28 28 chr4 51388354 51388532 -132900130 + AluSx SINE Alu 120 306 -6 1506 219 39 3 chr4 51388533 51388866 -132899796 - L1ME3A LINE L1 -249 5921 5577 828 209 44 103 chr4 51389102 51389422 -132899240 + AluJo SINE Alu 2 302 0 598 337 48 7 chr4 51390290 51390581 -132898081 + MER102b DNA MER1_type 38 340 -1 2236 120 0 0 chr4 51391432 51391732 -132896930 + AluSx SINE Alu 1 300 -12 286 271 94 0 chr4 51392026 51392122 -132896540 + Charlie8 DNA MER1_type 35 139 -2278 2143 118 26 7 chr4 51392316 51392622 -132896040 - AluSx SINE Alu 0 312 1 411 285 29 22 chr4 51392625 51392762 -132895900 - MER5A DNA MER1_type -51 138 1 590 186 103 171 chr4 51392802 51393142 -132895520 + L1MC5 LINE L1 6900 7167 -794 2159 131 7 0 chr4 51393142 51393448 -132895214 - AluSq SINE Alu -5 308 1 590 186 103 171 chr4 51393448 51393833 -132894829 + L1MC5 LINE L1 7167 7576 -385 310 240 80 20 chr4 51393917 51394017 -132894645 + L1MC5 LINE L1 7808 7913 -48 2306 102 3 0 chr4 51394234 51394539 -132894123 + AluSx SINE Alu 1 306 -6 1848 157 13 7 chr4 51395237 51395537 -132893125 + AluJb SINE Alu 1 302 -10 463 331 44 17 chr4 51395613 51395676 -132892986 + MER5A DNA MER1_type 1 61 -128 1939 148 10 7 chr4 51395676 51395974 -132892688 + AluJo SINE Alu 1 299 -13 463 331 44 17 chr4 51395974 51396091 -132892571 + MER5A DNA MER1_type 61 186 -3 1616 163 148 15 chr4 51396241 51396639 -132892023 + L1MB7 LINE L1 5734 6184 0 1862 180 40 36 chr4 51396843 51397348 -132891314 - MLT2A2 LTR ERVL 0 554 30 356 276 76 24 chr4 51397361 51397571 -132891091 + L1MC5 LINE L1 7705 7925 -36 1294 189 0 9 chr4 51397580 51397808 -132890854 + AluJb SINE Alu 68 293 -19 1323 249 93 64 chr4 51398627 51399176 -132889486 + L2 LINE L2 1424 1988 -1326 2208 53 4 0 chr4 51399177 51399442 -132889220 - L1PA4 LINE L1 0 6155 5890 4949 30 7 0 chr4 51399448 51400024 -132888638 + L1PA4 LINE L1 5254 5833 -322 1550 230 35 42 chr4 51400156 51400733 -132887929 + LTR23-int LTR ERV1 1 718 -4405 2585 153 52 5 chr4 51400733 51401138 -132887524 - MSTB LTR MaLR -2 424 1 1550 230 35 42 chr4 51401138 51401164 -132887498 + LTR23-int LTR ERV1 718 743 -4380 200 182 0 0 chr4 51401563 51401596 -132887066 + CT-rich Low_complexity Low_complexity 3 35 0 804 184 0 15 chr4 51402308 51402444 -132886218 + AluJb SINE Alu 1 134 -178 1436 185 0 0 chr4 51402758 51402990 -132885672 + AluSx SINE Alu 5 236 -76 451 279 102 10 chr4 51403092 51403289 -132885373 - L1M4 LINE L1 -1199 4947 4733 413 92 171 13 chr4 51403301 51403377 -132885285 + MER3 DNA MER1_type 122 209 0 * 583 136 23 0 chr4 51403377 51403424 -132885238 - MER3 DNA MER1_type -160 49 1 514 160 11 32 chr4 51404080 51404174 -132884488 - FRAM SINE Alu -14 162 71 282 259 74 28 chr4 51404213 51404321 -132884341 - L2 LINE L2 -11 3302 3190 242 306 176 35 chr4 51404302 51404472 -132884190 - MIR SINE MIR -17 245 52 * 260 273 0 15 chr4 51404514 51404580 -132884082 + MLT1J LTR MaLR 260 324 -187 2354 195 35 4 chr4 51404584 51405036 -132883626 + MLT1C LTR MaLR 2 467 0 2391 102 0 3 chr4 51405041 51405354 -132883308 + AluSq SINE Alu 1 312 -1 279 298 184 35 chr4 51405441 51405582 -132883080 + MLT1J LTR MaLR 336 497 -14 416 191 48 0 chr4 51406187 51406271 -132882391 + MER3 DNA MER1_type 1 88 -121 1305 203 92 64 chr4 51406308 51406888 -132881774 + MLT1D LTR MaLR 1 626 0 3195 127 8 8 chr4 51407717 51408212 -132880450 - L1MB4 LINE L1 0 6180 5686 674 236 28 34 chr4 51408300 51408478 -132880184 + MER5B DNA MER1_type 2 178 0 2138 106 3 3 chr4 51408801 51409106 -132879556 - AluSx SINE Alu 0 305 1 793 261 30 9 chr4 51409428 51409658 -132879004 + MIR SINE MIR 1 235 -27 237 218 10 20 chr4 51410173 51410274 -132878388 + (TA)n Simple_repeat Simple_repeat 2 101 0 304 272 0 33 chr4 51410274 51410366 -132878296 - L1MC4 LINE L1 -1339 6703 6615 493 213 0 28 chr4 51410367 51410508 -132878154 + (CATA)n Simple_repeat Simple_repeat 4 140 0 1717 175 75 9 chr4 51410623 51410971 -132877691 + MER4D LTR ERV1 307 677 -226 753 215 95 0 chr4 51410980 51411180 -132877482 + LTR49-int LTR ERV1 2244 2462 -2661 10088 229 28 19 chr4 51411180 51412441 -132876221 + L1PA13 LINE L1 917 2165 -4632 2327 100 0 7 chr4 51412441 51412741 -132875921 + AluSx SINE Alu 1 298 -14 10088 229 28 19 chr4 51412741 51415058 -132873604 + L1PA13 LINE L1 2165 4537 -2260 1206 129 0 0 chr4 51415062 51415225 -132873437 + AluJb SINE Alu 1 163 -149 346 208 39 0 chr4 51415225 51415302 -132873360 + L1PA15 LINE L1 2433 2512 -4337 781 204 15 0 chr4 51415353 51415485 -132873177 + AluJb SINE Alu 165 298 -14 1024 107 0 0 chr4 51415487 51415618 -132873044 + AluSg SINE Alu 1 131 -179 554 129 65 0 chr4 51415622 51415715 -132872947 + AluSc SINE Alu 211 309 0 5813 138 50 23 chr4 51415720 51415809 -132872853 + L1PA15 LINE L1 4570 4655 -2213 2322 107 3 0 chr4 51415809 51416117 -132872545 + AluSg SINE Alu 2 310 0 5813 138 50 23 chr4 51416117 51416550 -132872112 + L1PA15 LINE L1 4655 5075 -1793 2016 143 10 0 chr4 51416550 51416857 -132871805 + AluSx SINE Alu 1 310 -2 5813 138 50 23 chr4 51416857 51417153 -132871509 + L1PA15 LINE L1 5075 5361 -1507 257 0 30 0 chr4 51417153 51417186 -132871476 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5813 138 50 23 chr4 51417186 51418180 -132870482 + L1PA15 LINE L1 5361 6503 -365 414 0 0 0 chr4 51418180 51418226 -132870436 + (CA)n Simple_repeat Simple_repeat 2 47 0 5813 138 50 23 chr4 51418226 51418603 -132870059 + L1PA15 LINE L1 6503 6868 0 27 29 0 0 chr4 51419032 51419066 -132869596 + AT_rich Low_complexity Low_complexity 1 34 0 8598 148 30 58 chr4 51419182 51419989 -132868673 + LTR49-int LTR ERV1 3720 4548 -1783 192 40 0 0 chr4 51419989 51420014 -132868648 + (TATG)n Simple_repeat Simple_repeat 4 28 0 2140 112 0 3 chr4 51420014 51420301 -132868361 - AluSx SINE Alu -26 286 1 8598 148 30 58 chr4 51420301 51421304 -132867358 + LTR49-int LTR ERV1 4547 5382 -949 2306 88 10 0 chr4 51421304 51421601 -132867061 + AluSp SINE Alu 1 300 -13 8598 148 30 58 chr4 51421601 51421630 -132867032 + LTR49-int LTR ERV1 5382 5410 -921 2388 66 3 3 chr4 51421630 51421931 -132866731 + AluY SINE Alu 1 301 -10 12919 109 10 5 chr4 51422040 51423879 -132864783 - L1P LINE L1 -4296 1850 3 1260 184 5 0 chr4 51423889 51424101 -132864561 - L1 LINE L1 -1984 4162 3950 934 192 73 55 chr4 51424553 51424633 -132864029 - MER8 DNA MER2_type -1 238 161 2221 105 16 0 chr4 51424633 51424937 -132863725 + AluSx SINE Alu 1 309 -3 934 192 73 55 chr4 51424937 51425075 -132863587 - MER8 DNA MER2_type -78 161 16 228 35 0 0 chr4 51425389 51425418 -132863244 + (TG)n Simple_repeat Simple_repeat 2 30 0 574 214 9 0 chr4 51425917 51426029 -132862633 + FLAM_A SINE Alu 26 138 -4 407 68 17 0 chr4 51426031 51426090 -132862572 + (GA)n Simple_repeat Simple_repeat 1 60 0 810 239 0 0 chr4 51426523 51426690 -132861972 - AluJb SINE Alu -10 302 136 1750 275 34 16 chr4 51426754 51427256 -132861406 + MLT1J LTR MaLR 1 511 0 1732 94 0 5 chr4 51427413 51427637 -132861025 + AluSp SINE Alu 86 308 -5 1959 155 95 35 chr4 51427784 51428012 -132860650 - MSTA LTR MaLR 0 428 164 1754 90 132 19 chr4 51428012 51428278 -132860384 - AluSg1 SINE Alu -13 296 1 1959 155 95 35 chr4 51428278 51428448 -132860214 - MSTA LTR MaLR -264 164 6 226 261 80 23 chr4 51428501 51428589 -132860073 + MLT1K LTR MaLR 191 283 -305 301 298 111 30 chr4 51428694 51428892 -132859770 + MLT1K LTR MaLR 373 586 -2 438 242 23 16 chr4 51428919 51429047 -132859615 + MIR3 SINE MIR 32 160 -48 481 316 47 5 chr4 51429047 51429237 -132859425 + MER20B DNA MER1_type 1 198 -585 360 284 0 20 chr4 51429377 51429479 -132859183 + MER5A DNA MER1_type 5 104 -85 734 203 0 0 chr4 51429498 51429626 -132859036 + FLAM_A SINE Alu 4 131 -2 232 289 67 19 chr4 51429771 51429875 -132858787 - MIR SINE MIR -39 223 115 860 205 92 120 chr4 51430280 51430782 -132857880 + MLT1J2 LTR MaLR 3 409 0 2375 61 0 0 chr4 51431296 51431576 -132857086 + AluY SINE Alu 18 297 -14 226 234 0 31 chr4 51432828 51432892 -132855770 + (CGGGG)n Simple_repeat Simple_repeat 3 64 0 2039 91 44 0 chr4 51433836 51434140 -132854522 + AluSp SINE Alu 1 316 0 290 316 44 29 chr4 51434959 51435095 -132853567 - L2 LINE L2 -1 3271 3134 230 362 0 0 chr4 51435572 51435699 -132852963 - MIR SINE MIR 0 262 136 836 206 306 0 chr4 51435699 51435918 -132852744 + AluJb SINE Alu 1 286 -16 2332 104 0 0 chr4 51435918 51436217 -132852445 - AluSg SINE Alu -11 299 1 695 162 0 0 chr4 51437511 51437622 -132851040 - FAM SINE Alu -8 177 67 1146 274 69 16 chr4 51437642 51438018 -132850644 + LTR32 LTR ERVL 30 425 -46 338 148 125 0 chr4 51438053 51438120 -132850542 - FRAM/FAM SINE Alu -95 71 11 602 126 0 0 chr4 51438183 51438270 -132850392 + AluJb SINE Alu 2 88 -224 464 283 69 29 chr4 51438270 51438443 -132850219 + LTR32 LTR ERVL 34 213 -258 1314 148 0 19 chr4 51438443 51438653 -132850009 + AluJb SINE Alu 92 297 -15 23 0 0 0 chr4 51439139 51439162 -132849500 + AT_rich Low_complexity Low_complexity 1 23 0 1688 192 13 3 chr4 51439192 51439494 -132849168 - AluJo SINE Alu -5 307 3 219 246 0 0 chr4 51439844 51439901 -132848761 + L2 LINE L2 3257 3313 0 2068 123 14 0 chr4 51439929 51440221 -132848441 - AluSq SINE Alu -13 300 5 232 320 13 0 chr4 51440817 51440892 -132847770 - L2 LINE L2 -11 3302 3227 390 272 80 16 chr4 51441857 51441982 -132846680 + MIR SINE MIR 22 154 -108 986 251 130 35 chr4 51442722 51442847 -132845815 - L1ME4a LINE L1 -22 6099 5987 2245 100 0 53 chr4 51442847 51443167 -132845495 - AluY SINE Alu -8 303 1 986 251 130 35 chr4 51443167 51443534 -132845128 - L1ME4a LINE L1 -134 5987 5560 2358 107 0 0 chr4 51443916 51444216 -132844446 - AluSx SINE Alu -12 300 1 1859 192 16 25 chr4 51444560 51444925 -132843737 - MLT1A1 LTR MaLR -3 362 1 490 274 31 24 chr4 51444986 51445240 -132843422 - L1ME4a LINE L1 -842 5517 5259 841 169 78 0 chr4 51445449 51445611 -132843051 - FRAM SINE Alu 0 167 1 267 252 10 58 chr4 51445980 51446083 -132842579 + LTR33A LTR ERVL 426 523 0 25 51 0 0 chr4 51446246 51446285 -132842377 + AT_rich Low_complexity Low_complexity 1 39 0 1751 172 29 82 chr4 51446345 51446555 -132842107 + MLT1B LTR MaLR 1 180 -210 2201 128 0 6 chr4 51446555 51446868 -132841794 + AluSq SINE Alu 3 313 0 1751 172 29 82 chr4 51446868 51447069 -132841593 + MLT1B LTR MaLR 180 390 0 1225 191 0 25 chr4 51447168 51447404 -132841258 - AluJo SINE Alu -82 230 1 6565 144 31 16 chr4 51447425 51449375 -132839287 - L1MA2 LINE L1 -1 6303 4322 724 158 58 0 chr4 51449476 51449596 -132839066 - MER3 DNA MER1_type -82 127 1 805 173 13 27 chr4 51450219 51450369 -132838293 + FRAM SINE Alu 1 144 -32 342 223 18 9 chr4 51450381 51450493 -132838169 + GA-rich Low_complexity Low_complexity 2 114 0 1218 144 11 0 chr4 51451354 51451535 -132837127 + AluSg/x SINE Alu 123 305 -7 188 305 53 69 chr4 51451570 51451701 -132836961 + L2 LINE L2 2848 2976 -296 468 251 155 16 chr4 51451792 51451979 -132836683 + MIR SINE MIR 7 219 -43 21 36 0 0 chr4 51452822 51452850 -132835812 + GC_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr4 51452952 51452992 -132835670 + GC_rich Low_complexity Low_complexity 1 40 0 753 213 236 69 chr4 51454024 51454457 -132834205 + LTR21A LTR ERV1 1 505 0 610 117 219 0 chr4 51454895 51455023 -132833639 + MSTA LTR MaLR 37 192 -236 468 161 10 3 chr4 51455028 51455227 -132833435 + AluJ SINE Alu 1 258 -54 965 98 275 0 chr4 51455311 51455504 -132833158 + MSTA LTR MaLR 183 428 0 337 266 16 39 chr4 51455601 51455729 -132832933 - L2 LINE L2 -299 3014 2890 263 139 0 23 chr4 51456356 51456399 -132832263 + U6 snRNA snRNA 1 42 -65 279 179 232 0 chr4 51456532 51456588 -132832074 - MER3 DNA MER1_type -104 105 37 329 192 205 0 chr4 51456852 51456930 -132831732 - MER3 DNA MER1_type -115 94 1 1178 206 227 8 chr4 51456997 51457394 -132831268 + MLT1D LTR MaLR 5 488 -17 198 0 0 0 chr4 51457511 51457533 -132831129 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 2309 55 4 0 chr4 51457537 51457811 -132830851 - AluY SINE Alu -36 275 1 25 0 0 0 chr4 51458327 51458352 -132830310 + AT_rich Low_complexity Low_complexity 1 25 0 1342 148 80 4 chr4 51458364 51458614 -132830048 + AluJo SINE Alu 21 289 -23 252 0 0 0 chr4 51459407 51459435 -132829227 + (TG)n Simple_repeat Simple_repeat 2 29 0 2555 74 0 0 chr4 51459453 51459762 -132828900 - AluY SINE Alu -1 310 2 1726 151 3 44 chr4 51460584 51460901 -132827761 - AluJo SINE Alu -8 304 1 2381 74 7 0 chr4 51461650 51461947 -132826715 + AluSx SINE Alu 1 299 -13 283 235 61 31 chr4 51463156 51463254 -132825408 - MIR SINE MIR -70 192 92 280 241 63 0 chr4 51463513 51463592 -132825070 - L1ME3A LINE L1 -7 6163 6080 2388 85 6 20 chr4 51513648 51513990 -132774672 + L1PA8 LINE L1 5835 6171 -1 2652 16 0 0 chr4 51513994 51514297 -132774365 + AluY SINE Alu 1 303 -8 2180 231 38 25 chr4 51514302 51515007 -132773655 + L1M4 LINE L1 4235 4948 -1198 399 135 11 22 chr4 51515007 51515096 -132773566 + GA-rich Low_complexity Low_complexity 1 88 0 387 225 67 0 chr4 51515096 51515185 -132773477 + L1M4 LINE L1 4942 5036 -1110 1086 100 69 0 chr4 51515253 51515413 -132773249 + AluSg/x SINE Alu 131 301 -11 329 279 76 63 chr4 51515587 51515745 -132772917 - L2 LINE L2 0 3313 3154 593 156 65 9 chr4 51515753 51515893 -132772769 + L1MA9 LINE L1 6114 6274 -25 1817 126 0 66 chr4 51516421 51516562 -132772100 + AluSx SINE Alu 5 115 -197 2410 63 0 0 chr4 51516562 51516863 -132771799 + AluY SINE Alu 1 301 -10 1817 126 0 66 chr4 51516863 51517038 -132771624 + AluSx SINE Alu 115 300 -12 198 0 0 0 chr4 51517077 51517099 -132771563 + (T)n Simple_repeat Simple_repeat 1 22 0 475 0 30 15 chr4 51517216 51517283 -132771379 + L1HS LINE L1 6086 6153 -2 299 330 10 0 chr4 51517306 51517409 -132771253 - L1ME LINE L1 -256 5865 5762 1871 219 44 16 chr4 51518532 51518985 -132769677 - MLT1C LTR MaLR -1 466 1 344 324 9 9 chr4 51518986 51519091 -132769571 + MIR SINE MIR 33 137 -71 258 272 125 44 chr4 51520487 51520623 -132768039 + L2 LINE L2 2255 2401 -913 366 243 70 24 chr4 51520756 51520952 -132767710 + MER115 DNA AcHobo 179 417 -276 297 356 53 0 chr4 51521092 51521280 -132767382 + L2 LINE L2 2503 2700 -614 254 307 222 23 chr4 51521312 51521488 -132767174 + L2 LINE L2 2982 3192 -80 2635 177 25 46 chr4 51521537 51522056 -132766606 + MLT2B3 LTR ERVL 1 508 -46 1733 160 7 0 chr4 51522057 51522351 -132766311 + AluJo SINE Alu 1 296 -16 697 232 0 0 chr4 51522355 51522493 -132766169 + FLAM_C SINE Alu 3 140 -3 370 143 0 29 chr4 51522504 51522574 -132766088 + MLT2B2 LTR ERVL 448 515 0 1926 142 3 13 chr4 51522645 51522956 -132765706 + AluSc SINE Alu 2 309 0 747 137 8 0 chr4 51523278 51523402 -132765260 - L1MA4 LINE L1 0 6300 6176 1946 62 0 0 chr4 51523402 51523642 -132765020 - L1PA5 LINE L1 0 6154 5912 1748 123 67 0 chr4 51523645 51523930 -132764732 - L1MA4 LINE L1 -110 6190 5887 877 267 55 75 chr4 51524272 51524673 -132763989 + MLT1J LTR MaLR 115 507 -4 228 259 19 0 chr4 51525344 51525398 -132763264 - MIR SINE MIR -88 120 66 200 33 0 33 chr4 51525405 51525435 -132763227 + (TAA)n Simple_repeat Simple_repeat 2 30 0 400 344 69 5 chr4 51525455 51525644 -132763018 - MIR SINE MIR -4 258 58 330 106 0 0 chr4 51525754 51525801 -132762861 - L1PB1 LINE L1 -3 6148 6102 685 95 87 26 chr4 51525801 51525902 -132762760 + L1P5 LINE L1 5680 5794 -357 621 40 0 0 chr4 51525902 51525978 -132762684 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 685 95 87 26 chr4 51525978 51525996 -132762666 + L1P5 LINE L1 5794 5809 -342 452 266 41 97 chr4 51527301 51527568 -132761094 + L2 LINE L2 3011 3262 -10 441 294 138 9 chr4 51527596 51527814 -132760848 + MIR SINE MIR 1 246 -16 1827 222 20 10 chr4 51528151 51528543 -132760119 - MSTD LTR MaLR 0 396 1 276 256 28 63 chr4 51528699 51528864 -132759798 - MIR SINE MIR -61 147 39 763 131 0 0 chr4 51528882 51528989 -132759673 + MSTB1 LTR MaLR 7 113 -319 559 227 109 106 chr4 51529003 51529532 -132759130 + MLT1F LTR MaLR 31 559 0 2359 80 6 16 chr4 51529858 51530170 -132758492 - AluSp SINE Alu -4 309 1 22 0 0 0 chr4 51530375 51530397 -132758265 + AT_rich Low_complexity Low_complexity 1 22 0 2081 132 3 0 chr4 51530397 51530684 -132757978 - AluSx SINE Alu -24 288 1 1331 130 48 13 chr4 51530808 51531039 -132757623 + L1MA7 LINE L1 5587 5825 -466 1614 175 11 32 chr4 51531039 51531319 -132757343 + AluJo SINE Alu 1 274 -38 838 146 6 6 chr4 51531321 51531479 -132757183 + GA-rich Low_complexity Low_complexity 2 159 0 381 98 0 0 chr4 51531480 51531531 -132757131 + (GAAA)n Simple_repeat Simple_repeat 4 54 0 389 186 0 43 chr4 51531531 51531601 -132757061 + AluSc SINE Alu 127 193 -106 653 142 18 35 chr4 51531603 51531772 -132756890 + GA-rich Low_complexity Low_complexity 3 168 0 630 226 0 23 chr4 51531780 51531913 -132756749 + FLAM_A SINE Alu 1 130 -3 1432 134 27 7 chr4 51531920 51532328 -132756334 + L1MA7 LINE L1 5814 6291 0 198 206 32 32 chr4 51532967 51533030 -132755632 - L2 LINE L2 -2 3270 3208 216 0 0 0 chr4 51533047 51533071 -132755591 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 180 211 26 0 chr4 51533079 51533117 -132755545 - L2 LINE L2 -19 3294 3256 303 216 45 80 chr4 51533144 51533232 -132755430 + L2 LINE L2 3210 3294 -19 2573 51 0 0 chr4 51533468 51533764 -132754898 + AluY SINE Alu 1 296 -15 256 325 116 31 chr4 51533796 51534031 -132754631 - MIR SINE MIR -1 261 9 471 281 100 33 chr4 51534125 51534335 -132754327 - MIR SINE MIR -37 225 2 1739 186 96 82 chr4 51534370 51534860 -132753802 + MLT1D LTR MaLR 1 497 -8 276 214 14 14 chr4 51534866 51534936 -132753726 - L2 LINE L2 -25 3288 3219 1497 201 80 0 chr4 51535117 51535431 -132753231 - MER2 DNA MER2_type 0 345 7 2754 118 26 12 chr4 51535584 51536006 -132752656 - MSTA LTR MaLR 0 428 1 29 47 0 0 chr4 51536228 51536271 -132752391 + AT_rich Low_complexity Low_complexity 1 43 0 1076 234 72 9 chr4 51536836 51537182 -132751480 + L1M4 LINE L1 3612 3979 -2167 1217 205 44 34 chr4 51537221 51537519 -132751143 + L1M4 LINE L1 3950 4250 -1896 30998 114 8 18 chr4 51537523 51543778 -132744884 + L1PA8 LINE L1 1 6222 -265 1672 97 50 23 chr4 51543880 51544139 -132744523 - AluSg SINE Alu -44 266 1 973 266 86 34 chr4 51544184 51544751 -132743911 - L2 LINE L2 -795 2519 1923 1890 155 0 3 chr4 51544773 51545080 -132743582 + AluJb SINE Alu 1 306 0 526 254 233 0 chr4 51545193 51545382 -132743280 - MIR SINE MIR -22 240 8 862 263 60 91 chr4 51545637 51545778 -132742884 + MLT1H1 LTR MaLR 30 174 -381 2056 132 0 0 chr4 51545778 51546098 -132742564 - AluSx SINE Alu 0 320 1 862 263 60 91 chr4 51546098 51546491 -132742171 + MLT1H1 LTR MaLR 174 548 -7 257 234 252 0 chr4 51546667 51546774 -132741888 + L1ME4a LINE L1 5986 6119 -2 618 270 33 114 chr4 51546948 51547377 -132741285 + MLT1L LTR MaLR 222 615 0 204 311 15 30 chr4 51547389 51547413 -132741249 - L3b LINE CR1 -177 1406 1383 1280 224 0 8 chr4 51547413 51547654 -132741008 + MER8 DNA MER2_type 1 239 0 204 311 15 30 chr4 51547654 51547761 -132740901 - L3b LINE CR1 -200 1383 1277 595 189 118 37 chr4 51547766 51547951 -132740711 + MLT2B1 LTR ERVL 217 520 0 894 217 42 18 chr4 51548009 51548295 -132740367 - L1MC5 LINE L1 -61 7900 7608 2030 124 29 16 chr4 51548321 51548627 -132740035 + AluJb SINE Alu 1 310 -2 291 229 37 37 chr4 51548657 51548766 -132739896 - L1ME4a LINE L1 -13 6108 6000 226 218 153 40 chr4 51548900 51549024 -132739638 - L1ME4a LINE L1 -114 6007 5870 43751 33 22 2 chr4 51549034 51555054 -132733608 + L1HS LINE L1 1 6147 -8 1728 279 66 31 chr4 51555419 51556206 -132732456 + L2 LINE L2 2284 3080 -233 761 206 87 143 chr4 51556249 51556627 -132732035 + LTR16A1 LTR ERVL 19 370 -87 2169 122 3 25 chr4 51556627 51556946 -132731716 + AluSq SINE Alu 1 312 -1 761 206 87 143 chr4 51556946 51557014 -132731648 + LTR16A1 LTR ERVL 370 440 -17 592 217 120 0 chr4 51557029 51557204 -132731458 + L2 LINE L2 3118 3313 0 581 279 45 49 chr4 51557942 51558189 -132730473 - MIR SINE MIR 0 262 17 2342 78 172 5 chr4 51558249 51558633 -132730029 + LTR7 LTR ERV1 1 448 -2 1708 74 59 0 chr4 51558851 51558965 -132729697 + L1MA2 LINE L1 6034 6140 -164 2026 142 0 0 chr4 51558965 51559358 -132729304 + AluSx SINE Alu 1 393 0 1708 74 59 0 chr4 51559358 51559498 -132729164 + L1MA2 LINE L1 6140 6304 0 2273 231 53 12 chr4 51559542 51560052 -132728610 - MLT1F LTR MaLR -10 532 2 243 204 0 0 chr4 51560119 51560173 -132728489 + (CA)n Simple_repeat Simple_repeat 1 54 0 277 217 183 8 chr4 51560185 51560305 -132728357 + MIR SINE MIR 122 262 0 332 231 0 0 chr4 51561103 51561168 -132727494 - L2 LINE L2 -48 3265 3201 837 286 82 34 chr4 51561351 51561788 -132726874 + LTR33A LTR ERVL 66 523 0 512 240 13 32 chr4 51563575 51563729 -132724933 + MIR SINE MIR 111 261 -1 229 305 8 53 chr4 51564059 51564190 -132724472 - L1ME4a LINE L1 -1952 5856 5732 244 212 106 12 chr4 51565976 51566061 -132722601 - L2 LINE L2 -8 3305 3213 * 508 299 18 6 chr4 51566055 51566222 -132722440 - MIR SINE MIR -24 238 70 1642 274 81 16 chr4 51566894 51567598 -132721064 + L2 LINE L2 754 1503 -1811 225 224 45 60 chr4 51567639 51567706 -132720956 - MLT1L LTR MaLR -343 272 207 1760 153 28 14 chr4 51568441 51568729 -132719933 + AluJb SINE Alu 1 292 -20 423 276 78 57 chr4 51569005 51569288 -132719374 - MLT1L LTR MaLR -326 289 1 337 294 15 33 chr4 51569294 51569508 -132719154 + MIR SINE MIR 4 262 0 231 344 48 16 chr4 51569549 51569674 -132718988 - MIR SINE MIR -78 184 56 1143 270 71 48 chr4 51570033 51570529 -132718133 + MLT1K LTR MaLR 79 585 -3 216 0 0 0 chr4 51571719 51571743 -132716919 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 1757 183 0 16 chr4 51571981 51572298 -132716364 - AluJb SINE Alu 0 312 1 285 128 0 0 chr4 51573980 51574027 -132714635 + (CA)n Simple_repeat Simple_repeat 2 48 0 752 303 4 9 chr4 51574222 51574450 -132714212 + MIR SINE MIR 28 254 -8 2334 110 7 0 chr4 51574589 51574898 -132713764 + AluY SINE Alu 1 311 0 393 250 20 10 chr4 51574965 51575065 -132713597 - L2 LINE L2 -5 3267 3167 653 191 58 75 chr4 51575831 51576019 -132712643 - L2 LINE L2 0 3313 3129 2329 101 0 3 chr4 51577225 51577523 -132711139 + AluSx SINE Alu 1 297 -15 360 0 0 0 chr4 51578966 51579006 -132709656 + (TG)n Simple_repeat Simple_repeat 2 41 0 229 309 15 0 chr4 51579599 51579667 -132708995 + L3 LINE CR1 1408 1476 -101 2883 143 56 24 chr4 51579705 51580243 -132708419 - L1MC1 LINE L1 0 6333 5779 797 266 102 23 chr4 51580475 51580780 -132707882 - MLT1K LTR MaLR -28 560 232 2029 146 99 45 chr4 51581009 51581341 -132707321 + MSTB LTR MaLR 1 360 -66 216 0 0 0 chr4 51581341 51581365 -132707297 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2029 146 99 45 chr4 51581365 51581436 -132707226 + MSTB LTR MaLR 360 426 0 225 136 0 68 chr4 51581682 51581726 -132706936 + MLT1J LTR MaLR 93 133 -378 * 229 322 69 11 chr4 51581702 51581789 -132706873 + LTR67 LTR ERVL 114 205 -352 406 282 49 6 chr4 51581948 51582111 -132706551 + LTR67 LTR ERVL 359 528 -29 190 226 75 38 chr4 51582437 51582490 -132706172 - L2 LINE L2 -1 3312 3258 434 308 38 44 chr4 51582691 51582850 -132705812 + L2 LINE L2 3107 3264 -8 267 31 0 0 chr4 51583036 51583068 -132705594 + (A)n Simple_repeat Simple_repeat 1 32 0 266 299 52 0 chr4 51583068 51583145 -132705517 + MIR SINE MIR 63 143 -119 909 216 242 80 chr4 51583149 51583625 -132705037 + MLT1H1 LTR MaLR 2 554 -1 332 293 19 19 chr4 51583625 51583731 -132704931 + MIR SINE MIR 141 246 -16 312 27 0 0 chr4 51584068 51584105 -132704557 + (TG)n Simple_repeat Simple_repeat 2 38 0 182 236 18 0 chr4 51589626 51589681 -132698981 + CT-rich Low_complexity Low_complexity 2 57 0 442 243 99 20 chr4 51590346 51590498 -132698164 - MIR SINE MIR -15 247 84 302 264 54 47 chr4 51590924 51591053 -132697609 - MIR SINE MIR -51 211 82 182 212 0 0 chr4 51591809 51591842 -132696820 - MIR SINE MIR -90 118 86 197 167 0 17 chr4 51591847 51591907 -132696755 + GA-rich Low_complexity Low_complexity 1 59 0 419 293 115 19 chr4 51592236 51592393 -132696269 - MIR SINE MIR -13 249 78 415 260 240 0 chr4 51594271 51594467 -132694195 - MIR SINE MIR -19 243 1 336 274 170 22 chr4 51594673 51594808 -132693854 - MIR SINE MIR -80 182 28 1719 124 15 11 chr4 51595350 51595615 -132693047 - AluSp SINE Alu -12 301 36 25 51 0 0 chr4 51595615 51595654 -132693008 + AT_rich Low_complexity Low_complexity 1 39 0 417 195 42 42 chr4 51595916 51596034 -132692628 + L2 LINE L2 3154 3271 -1 25 31 0 0 chr4 51597189 51597221 -132691441 + AT_rich Low_complexity Low_complexity 1 32 0 1501 185 30 52 chr4 51597975 51598342 -132690320 - MLT1B LTR MaLR -30 360 2 757 299 33 18 chr4 51598357 51598607 -132690055 - MIR SINE MIR 0 262 10 486 0 0 0 chr4 51599234 51599288 -132689374 + (TA)n Simple_repeat Simple_repeat 1 54 0 279 337 84 10 chr4 51599540 51599742 -132688920 + MIR SINE MIR 40 256 -6 2116 111 0 22 chr4 51599901 51600216 -132688446 + AluSx SINE Alu 3 310 -2 766 236 75 28 chr4 51600843 51601055 -132687607 + MIR SINE MIR 6 227 -35 251 217 84 124 chr4 51601398 51601624 -132687038 + L2 LINE L2 2918 3134 -138 207 250 0 0 chr4 51601617 51601653 -132687009 + L2 LINE L2 3255 3290 -23 * 191 180 0 164 chr4 51601624 51601685 -132686977 + L2 LINE L2 3221 3271 -1 * 245 295 0 42 chr4 51602349 51602444 -132686218 + CT-rich Low_complexity Low_complexity 4 94 0 23 0 0 0 chr4 51603717 51603740 -132684922 + AT_rich Low_complexity Low_complexity 1 23 0 2098 119 3 3 chr4 51603766 51604077 -132684585 + AluSx SINE Alu 1 311 -1 410 286 27 54 chr4 51604791 51604976 -132683686 + L2 LINE L2 3102 3281 -32 360 318 60 13 chr4 51605036 51605187 -132683475 + L3 LINE CR1 805 962 -615 277 314 47 0 chr4 51605266 51605352 -132683310 - L2 LINE L2 -7 3306 3217 * 342 277 50 0 chr4 51605334 51605453 -132683209 - L2 LINE L2 -408 2906 2782 841 288 50 74 chr4 51605459 51605844 -132682818 + L3 LINE CR1 1022 1396 -181 3610 71 7 0 chr4 51605844 51606292 -132682370 + MLT2A2 LTR ERVL 3 453 0 841 288 50 74 chr4 51606292 51606368 -132682294 + L3 LINE CR1 1396 1472 -105 569 284 88 44 chr4 51607795 51608112 -132680550 + LTR16C LTR ERVL 161 491 0 312 315 174 23 chr4 51608295 51608514 -132680148 - MIR SINE MIR -6 256 5 2468 193 36 18 chr4 51609386 51609937 -132678725 + LTR27 LTR ERV1 3 1252 -137 399 218 49 70 chr4 51609957 51610099 -132678563 + LTR27 LTR ERV1 498 636 0 187 263 70 0 chr4 51610251 51610308 -132678354 + L3b LINE CR1 1180 1240 -343 625 255 22 69 chr4 51610350 51610581 -132678081 + L2 LINE L2 3094 3313 0 2450 14 0 0 chr4 51611323 51611601 -132677061 - AluYb8 SINE Alu -2 316 39 843 328 161 24 chr4 51611879 51612674 -132675988 + L2 LINE L2 1809 2712 -602 313 336 18 0 chr4 51612692 51612802 -132675860 - MIR SINE MIR -37 225 114 589 210 60 24 chr4 51613091 51613258 -132675404 - L1ME3A LINE L1 -39 6131 5959 222 240 80 0 chr4 51613371 51613421 -132675241 + L2 LINE L2 3218 3271 -1 778 250 14 38 chr4 51614621 51614833 -132673829 - L2 LINE L2 0 3313 3107 352 327 95 6 chr4 51614838 51615006 -132673656 - MIR SINE MIR -49 213 31 184 318 156 17 chr4 51615793 51615972 -132672690 + L2 LINE L2 2678 2881 -433 207 253 212 0 chr4 51616029 51616128 -132672534 + L2 LINE L2 2990 3109 -163 243 214 36 0 chr4 51616609 51616665 -132671997 + CT-rich Low_complexity Low_complexity 5 62 0 605 203 86 0 chr4 51616666 51616794 -132671868 - FLAM_A SINE Alu 0 142 4 233 290 29 0 chr4 51616795 51616864 -132671798 + MIR3 SINE MIR 118 188 -20 261 194 0 42 chr4 51617057 51617129 -132671533 + MLT1K LTR MaLR 194 262 -326 221 196 59 20 chr4 51617186 51617237 -132671425 - L2 LINE L2 -3 3310 3258 266 254 0 0 chr4 51618541 51618596 -132670066 + MLT1G1 LTR MaLR 6 60 -535 44367 44 7 0 chr4 51618604 51624718 -132663944 - L1PA4 LINE L1 -2 6153 1 1108 263 234 26 chr4 51624734 51625153 -132663509 + MLT1G1 LTR MaLR 90 595 0 1099 239 73 0 chr4 51626051 51626285 -132662377 - MIR SINE MIR 0 262 12 240 331 58 36 chr4 51626448 51626587 -132662075 - L3b LINE CR1 -153 1430 1289 201 264 76 111 chr4 51626977 51627121 -132661541 - L2 LINE L2 -20 3293 3155 430 213 44 52 chr4 51627159 51627295 -132661367 + MER112 DNA MER1_type 119 253 -7 236 272 62 12 chr4 51628199 51628280 -132660382 + MIR SINE MIR 14 98 -164 462 221 25 33 chr4 51628339 51628461 -132660201 + MIR SINE MIR 101 221 -41 307 296 23 23 chr4 51629334 51629466 -132659196 - MER103 DNA DNA -27 139 8 216 309 29 0 chr4 51629577 51629645 -132659017 - MER91A DNA MER1_type -123 73 4 315 0 0 0 chr4 51631134 51631169 -132657493 + (TG)n Simple_repeat Simple_repeat 2 36 0 1405 272 91 15 chr4 51632390 51632938 -132655724 + L1MC4a LINE L1 5392 5981 -1827 186 43 0 0 chr4 51633032 51633055 -132655607 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 355 229 114 0 chr4 51633087 51633218 -132655444 + L1ME4a LINE L1 5908 6053 -68 28 29 0 0 chr4 51633259 51633294 -132655368 + AT_rich Low_complexity Low_complexity 1 35 0 1331 266 59 20 chr4 51633488 51633932 -132654730 + MLT1J LTR MaLR 43 503 -8 2808 112 5 3 chr4 51634087 51634461 -132654201 + THE1C LTR MaLR 1 375 0 818 220 72 18 chr4 51634949 51635172 -132653490 - MER69 DNA AcHobo -93 2433 2199 976 197 72 0 chr4 51635172 51635380 -132653282 + LTR50 LTR ERVL 1 223 -572 869 268 80 36 chr4 51636521 51636618 -132652044 - MLT1J2 LTR MaLR -72 378 287 3508 129 21 21 chr4 51636618 51637145 -132651517 + MER1A DNA MER1_type 1 527 0 869 268 80 36 chr4 51637145 51637409 -132651253 - MLT1J2 LTR MaLR -163 287 1 902 198 77 22 chr4 51638033 51638255 -132650407 - ORSL DNA AcHobo 0 275 42 228 67 0 0 chr4 51639008 51639038 -132649624 + (TCCA)n Simple_repeat Simple_repeat 1 30 0 386 315 47 7 chr4 51639065 51639216 -132649446 - MIR3 SINE MIR -39 169 8 2175 91 3 14 chr4 51639712 51640028 -132648634 + AluSx SINE Alu 1 313 0 1570 189 10 33 chr4 51640322 51640629 -132648033 - AluJo SINE Alu -11 301 2 818 276 9 0 chr4 51640630 51640840 -132647822 - MIR SINE MIR -44 218 7 226 330 33 11 chr4 51640920 51641011 -132647651 - L2 LINE L2 -18 3254 3162 529 252 0 9 chr4 51641780 51641887 -132646775 - L2 LINE L2 -12 3301 3196 23 0 0 0 chr4 51641890 51641913 -132646749 + AT_rich Low_complexity Low_complexity 1 23 0 246 245 19 0 chr4 51642200 51642253 -132646409 - LTR16C LTR ERVL 0 491 438 293 325 56 25 chr4 51643779 51643939 -132644723 - MIR3 SINE MIR -20 188 24 211 274 0 0 chr4 51644006 51644057 -132644605 - MIR3 SINE MIR -21 187 137 213 39 0 0 chr4 51644395 51644421 -132644241 + (TTA)n Simple_repeat Simple_repeat 2 27 0 410 202 53 0 chr4 51644985 51645079 -132643583 - MIR SINE MIR -65 197 99 734 323 142 3 chr4 51645232 51645563 -132643099 + LTR16C LTR ERVL 86 462 -29 3803 168 30 39 chr4 51645595 51646341 -132642321 - L1MB7 LINE L1 0 6184 5446 1920 134 0 3 chr4 51646617 51646940 -132641722 + AluSx SINE Alu 1 322 0 982 274 17 0 chr4 51648421 51648655 -132640007 - MIR SINE MIR -24 238 1 284 157 8 50 chr4 51648677 51648798 -132639864 + (TA)n Simple_repeat Simple_repeat 2 117 0 198 118 0 0 chr4 51649794 51649828 -132638834 + (CA)n Simple_repeat Simple_repeat 2 35 0 1883 146 14 10 chr4 51651475 51651763 -132636899 + AluJo SINE Alu 1 289 -23 285 255 153 10 chr4 51652189 51652287 -132636375 + L2 LINE L2 3161 3272 0 535 280 31 10 chr4 51652338 51652531 -132636131 - MARNA DNA Mariner -350 236 40 4948 119 9 7 chr4 51653183 51653936 -132634726 + L1P LINE L1 4390 5144 -1002 1180 210 181 62 chr4 51657182 51657535 -132631127 + MSTD LTR MaLR 1 395 -1 361 281 62 25 chr4 51658109 51658284 -132630378 + L1ME LINE L1 5629 5807 -345 1131 183 30 0 chr4 51658333 51658530 -132630132 + MER3 DNA MER1_type 7 209 0 294 204 0 0 chr4 51658484 51658538 -132630124 - MER3 DNA MER1_type -116 93 40 * 261 156 0 0 chr4 51658602 51658647 -132630015 + L2 LINE L2 3264 3308 -5 2616 140 68 14 chr4 51658782 51659211 -132629451 + LTR47A LTR ERVL 1 452 0 2437 85 3 0 chr4 51659250 51659557 -132629105 - AluSp SINE Alu -3 310 3 274 300 30 0 chr4 51660197 51660297 -132628365 + MER113 DNA MER1_type? 4 106 -415 940 247 242 5 chr4 51660340 51660745 -132627917 - L2 LINE L2 -5 3308 2808 370 260 70 0 chr4 51661404 51661504 -132627158 - L2 LINE L2 0 3313 3207 1396 206 16 0 chr4 51661547 51661795 -132626867 - MIR SINE MIR -3 259 8 465 263 161 11 chr4 51662258 51662444 -132626218 + MLT1I LTR MaLR 8 221 -188 432 264 47 0 chr4 51662472 51662578 -132626084 + MLT1I LTR MaLR 282 392 -17 231 259 265 38 chr4 51662655 51662840 -132625822 - MIR SINE MIR 0 262 36 308 211 200 11 chr4 51662963 51663053 -132625609 - L2 LINE L2 -30 3242 3136 232 188 0 21 chr4 51663135 51663183 -132625479 + GA-rich Low_complexity Low_complexity 2 48 0 299 326 29 7 chr4 51664306 51664444 -132624218 + L2 LINE L2 2931 3071 -201 488 305 56 5 chr4 51664591 51664804 -132623858 - L2 LINE L2 -4 3309 3086 234 239 0 0 chr4 51665037 51665083 -132623579 + L2 LINE L2 3224 3269 -3 1511 121 39 17 chr4 51665216 51665447 -132623215 - MER46A DNA MER2_type 0 236 1 757 239 65 5 chr4 51665881 51666082 -132622580 + MIR SINE MIR 17 229 -33 773 199 76 98 chr4 51666732 51667175 -132621487 - MSTD LTR MaLR 0 396 6 29 0 0 0 chr4 51668725 51668754 -132619908 + AT_rich Low_complexity Low_complexity 1 29 0 811 246 153 39 chr4 51670777 51671236 -132617426 + L1M4 LINE L1 4538 5048 -1098 386 284 39 19 chr4 51671242 51671397 -132617265 + L1M4 LINE L1 5176 5333 -813 1529 86 16 4 chr4 51671730 51671969 -132616693 - L1PA8A LINE L1 -286 5845 5643 1816 112 12 8 chr4 51671969 51672228 -132616434 - AluSx SINE Alu -52 260 1 2576 59 0 3 chr4 51673568 51673874 -132614788 - AluY SINE Alu -5 306 2 301 217 29 0 chr4 51673963 51674032 -132614630 + MER116 DNA Mariner 7 77 -3 2005 84 52 3 chr4 51674105 51674391 -132614271 - AluY SINE Alu -11 300 1 211 188 80 14 chr4 51675692 51675830 -132612832 + (CACAA)n Simple_repeat Simple_repeat 3 149 0 1572 209 7 7 chr4 51677390 51677692 -132610970 - AluJo SINE Alu -10 302 1 254 340 133 44 chr4 51678595 51678798 -132609864 - L2 LINE L2 -86 3186 2966 236 190 249 71 chr4 51679639 51679819 -132608843 + MIR SINE MIR 2 199 -57 403 226 12 0 chr4 51679935 51680019 -132608643 + L2 LINE L2 3229 3313 0 22 0 0 0 chr4 51681705 51681727 -132606935 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 51682875 51682897 -132605765 + AT_rich Low_complexity Low_complexity 1 22 0 303 28 0 0 chr4 51683215 51683251 -132605411 + (TC)n Simple_repeat Simple_repeat 1 36 0 198 0 0 0 chr4 51683250 51683272 -132605390 + (CA)n Simple_repeat Simple_repeat 1 22 0 * 207 0 0 0 chr4 51683688 51683711 -132604951 + (TG)n Simple_repeat Simple_repeat 2 24 0 245 212 76 0 chr4 51684557 51684623 -132604039 - MIR3 SINE MIR -26 182 112 233 337 43 0 chr4 51685057 51685149 -132603513 - L2 LINE L2 -260 3012 2917 260 175 320 10 chr4 51685529 51685626 -132603036 + L2 LINE L2 3142 3268 -4 397 310 162 28 chr4 51686167 51686383 -132602279 - L2 LINE L2 -6 3266 3022 26 0 0 0 chr4 51686558 51686584 -132602078 + AT_rich Low_complexity Low_complexity 1 26 0 304 276 13 0 chr4 51690134 51690210 -132598452 + Charlie8 DNA MER1_type 158 234 -2183 33 56 0 0 chr4 51691540 51691594 -132597068 + AT_rich Low_complexity Low_complexity 1 54 0 845 297 29 53 chr4 51691752 51692234 -132596428 + LTR16B LTR ERVL 17 462 -2 347 172 25 64 chr4 51692268 51692425 -132596237 + CT-rich Low_complexity Low_complexity 3 153 0 204 167 0 0 chr4 51692655 51692703 -132595959 + C-rich Low_complexity Low_complexity 6 53 0 23 0 0 0 chr4 51693294 51693317 -132595345 + AT_rich Low_complexity Low_complexity 1 23 0 347 271 83 15 chr4 51693727 51693860 -132594802 - MIR3 SINE MIR -23 185 44 330 239 94 17 chr4 51694225 51694342 -132594320 + MIR SINE MIR 72 197 -65 505 257 108 92 chr4 51697423 51697738 -132590924 + MLT1I LTR MaLR 71 390 -19 201 247 0 0 chr4 51698050 51698131 -132590531 + C-rich Low_complexity Low_complexity 3 83 0 21 0 0 0 chr4 51698412 51698433 -132590229 + AT_rich Low_complexity Low_complexity 1 21 0 201 358 101 9 chr4 51698935 51699044 -132589618 - MIR SINE MIR -15 247 129 216 315 112 0 chr4 51699261 51699350 -132589312 - MIR SINE MIR -84 178 80 762 258 75 0 chr4 51699730 51699943 -132588719 + MIR SINE MIR 5 233 -29 339 188 0 0 chr4 51700328 51700392 -132588270 - MER116 DNA Mariner -4 76 13 772 288 21 25 chr4 51701228 51701468 -132587194 - MIR SINE MIR -8 254 16 460 268 68 75 chr4 51702164 51702444 -132586218 - MLT1K LTR MaLR 0 588 311 232 247 0 99 chr4 51704224 51704305 -132584357 + MIR3 SINE MIR 125 197 -11 802 295 19 31 chr4 51704705 51704963 -132583699 - MIR SINE MIR -2 260 6 346 232 84 28 chr4 51704981 51705123 -132583539 + MIR3 SINE MIR 11 160 -48 515 267 93 17 chr4 51705123 51705295 -132583367 + MER5A DNA MER1_type 1 185 -4 203 133 0 0 chr4 51705681 51705711 -132582951 + (GGGA)n Simple_repeat Simple_repeat 3 32 0 252 0 0 0 chr4 51705723 51705751 -132582911 + (CA)n Simple_repeat Simple_repeat 2 29 0 2470 81 3 3 chr4 51706185 51706494 -132582168 - AluSp SINE Alu -4 309 1 289 0 49 0 chr4 51706535 51706576 -132582086 + (CA)n Simple_repeat Simple_repeat 2 44 0 212 325 181 47 chr4 51706606 51706883 -132581779 - L2 LINE L2 -11 3261 2948 887 273 54 22 chr4 51706955 51707233 -132581429 + MLT1K LTR MaLR 153 439 -149 864 296 51 0 chr4 51707380 51707654 -132581008 + MLT1K LTR MaLR 164 451 -137 241 291 13 13 chr4 51707968 51708047 -132580615 + L3 LINE CR1 1491 1569 -8 244 239 90 0 chr4 51708387 51708454 -132580208 + L3 LINE CR1 1503 1575 -2 301 436 41 4 chr4 51708510 51708753 -132579909 - L3 LINE CR1 -27 1550 1299 249 284 80 0 chr4 51709057 51709145 -132579517 - L3 LINE CR1 -283 1294 1200 240 35 0 0 chr4 51710923 51710952 -132577710 + (CA)n Simple_repeat Simple_repeat 2 30 0 210 37 0 0 chr4 51711242 51711269 -132577393 + (CA)n Simple_repeat Simple_repeat 2 28 0 799 174 13 67 chr4 51712834 51713058 -132575604 - L1MC3 LINE L1 0 7785 7574 1833 137 27 30 chr4 51713063 51713399 -132575263 - L1MB3 LINE L1 -7 6176 5842 713 239 143 33 chr4 51713599 51713835 -132574827 - MIR SINE MIR -11 251 1 199 67 33 0 chr4 51714429 51714459 -132574203 - L2 LINE L2 -32 3240 3210 211 194 0 0 chr4 51714718 51714754 -132573908 + (TG)n Simple_repeat Simple_repeat 2 37 0 201 196 0 0 chr4 51714967 51715018 -132573644 + (TG)n Simple_repeat Simple_repeat 2 52 0 2931 156 8 4 chr4 51715092 51715566 -132573096 + MER31A LTR ERV1 1 476 -9 935 286 43 25 chr4 51715678 51716076 -132572586 + MLT1I LTR MaLR 1 405 -4 43543 50 3 2 chr4 51716266 51722412 -132566250 + L1PA4 LINE L1 1 6153 -2 1033 247 8 3 chr4 51723034 51723273 -132565389 + MIR SINE MIR 6 241 -21 370 241 62 62 chr4 51724202 51724347 -132564315 + L2 LINE L2 3159 3303 -10 370 259 114 15 chr4 51724650 51724781 -132563881 + MIR SINE MIR 119 262 0 776 175 24 0 chr4 51725162 51725288 -132563374 - FLAM_C SINE Alu -13 130 2 23 0 0 0 chr4 51725633 51725656 -132563006 + AT_rich Low_complexity Low_complexity 1 23 0 237 222 62 74 chr4 51726220 51726301 -132562361 + MER91C DNA MER1_type 31 110 -30 644 233 74 28 chr4 51726422 51726598 -132562064 - MIR SINE MIR 0 262 79 255 322 104 26 chr4 51727093 51727208 -132561454 + L2 LINE L2 3129 3252 -20 302 195 52 39 chr4 51727830 51727907 -132560755 - MIR SINE MIR -62 146 69 491 326 193 8 chr4 51727977 51728370 -132560292 - L2 LINE L2 -508 2806 2341 24 0 0 0 chr4 51729762 51729786 -132558876 + AT_rich Low_complexity Low_complexity 1 24 0 1361 87 15 15 chr4 51732619 51732814 -132555848 + L1PA8A LINE L1 5935 6129 -2 418 322 66 0 chr4 51733615 51733767 -132554895 + MER5B DNA MER1_type 17 178 0 720 281 120 39 chr4 51733878 51734345 -132554317 + HAL1 LINE L1 2 506 -2001 216 237 68 0 chr4 51734361 51734420 -132554242 - MIR SINE MIR -74 188 126 217 311 33 33 chr4 51735109 51735199 -132553463 - MIR3 SINE MIR -13 195 106 1486 192 135 35 chr4 51735621 51736043 -132552619 + Charlie1b DNA MER1_type 60 523 0 615 230 189 23 chr4 51736360 51736577 -132552085 - MIR SINE MIR 0 262 10 31 76 0 0 chr4 51737146 51737212 -132551450 + AT_rich Low_complexity Low_complexity 1 66 0 2015 125 14 0 chr4 51737212 51737501 -132551161 + AluSx SINE Alu 1 293 -19 258 32 0 0 chr4 51737508 51737539 -132551123 + (TAA)n Simple_repeat Simple_repeat 2 32 0 320 309 93 19 chr4 51738604 51738766 -132549896 - MIR SINE MIR -56 206 33 230 133 0 22 chr4 51739092 51739137 -132549525 + (TTCC)n Simple_repeat Simple_repeat 3 46 0 1551 92 24 0 chr4 51739242 51739448 -132549214 - L1PA16 LINE L1 -4 6162 5952 638 260 105 6 chr4 51739861 51740042 -132548620 + MIR SINE MIR 51 249 -13 489 315 24 106 chr4 51741784 51742114 -132546548 + L2 LINE L2 2930 3232 -40 2297 114 67 22 chr4 51742560 51742919 -132545743 + THE1C LTR MaLR 1 375 0 377 152 105 19 chr4 51743275 51743380 -132545282 - L1MC2 LINE L1 -1 6343 6230 508 271 54 51 chr4 51743528 51743878 -132544784 - L1ME4a LINE L1 -29 6092 5742 261 271 57 41 chr4 51744778 51744900 -132543762 - L1ME4a LINE L1 0 6121 5998 22 35 0 0 chr4 51745058 51745087 -132543575 + AT_rich Low_complexity Low_complexity 1 29 0 1657 255 9 35 chr4 51746055 51746483 -132542179 + MLT1J LTR MaLR 95 511 0 22 0 0 0 chr4 51746853 51746875 -132541787 + AT_rich Low_complexity Low_complexity 1 22 0 2066 188 30 124 chr4 51747366 51748042 -132540620 + LTR9 LTR ERV1 1 612 0 1456 136 51 118 chr4 51748125 51748457 -132540205 - MER2 DNA MER2_type -20 325 16 16191 129 26 8 chr4 51748776 51751152 -132537510 - Tigger1 DNA MER2_type 0 2418 1 206 205 0 0 chr4 51752949 51752988 -132535674 + CT-rich Low_complexity Low_complexity 3 41 0 347 240 0 0 chr4 51753527 51753602 -132535060 - MIR SINE MIR -98 164 90 235 162 0 0 chr4 51753714 51753751 -132534911 + L2 LINE L2 3168 3204 -68 301 227 164 31 chr4 51754210 51754338 -132534324 - MIR SINE MIR -2 260 116 10654 58 7 36 chr4 51754997 51756422 -132532240 + SVA Other Other 1 1384 -2 23 33 0 0 chr4 51756435 51756465 -132532197 + AT_rich Low_complexity Low_complexity 1 30 0 382 211 82 68 chr4 51757334 51757481 -132531181 + MIR3 SINE MIR 7 155 -53 195 182 15 136 chr4 51757502 51757568 -132531094 - MIR3 SINE MIR -32 176 119 2824 101 0 8 chr4 51757988 51758460 -132530202 - MER1A DNA MER1_type -21 508 1 188 295 179 11 chr4 51758472 51758567 -132530095 + L2 LINE L2 3161 3271 -42 417 322 7 20 chr4 51761005 51761154 -132527508 - MIR3 SINE MIR -14 194 48 287 222 111 20 chr4 51761225 51761324 -132527338 - L2 LINE L2 -3 3269 3162 212 57 0 29 chr4 51761799 51761834 -132526828 + (TAA)n Simple_repeat Simple_repeat 1 34 0 312 183 96 87 chr4 51762986 51763101 -132525561 + L2 LINE L2 3139 3254 -18 621 225 185 15 chr4 51763313 51763513 -132525149 + MER102a DNA MER1_type 89 322 -8 669 172 15 37 chr4 51763811 51763945 -132524717 - MER1B DNA MER1_type -166 131 1 660 333 22 9 chr4 51764767 51764998 -132523664 - MIR SINE MIR -23 239 6 340 289 22 22 chr4 51765567 51765702 -132522960 - L2 LINE L2 -8 3305 3171 2677 146 31 9 chr4 51765746 51766165 -132522497 - MSTA LTR MaLR 0 428 1 236 236 18 0 chr4 51766169 51766224 -132522438 + CT-rich Low_complexity Low_complexity 1 56 0 364 292 11 0 chr4 51766225 51766314 -132522348 - L2 LINE L2 -33 3280 3191 1091 206 25 0 chr4 51766316 51766520 -132522142 - MER3 DNA MER1_type 0 209 1 213 359 13 0 chr4 51766527 51766605 -132522057 + L2 LINE L2 3228 3306 -7 560 222 157 0 chr4 51767445 51767598 -132521064 - MIR SINE MIR -4 258 82 187 357 10 10 chr4 51767753 51767851 -132520811 + L2 LINE L2 2009 2106 -1208 1757 180 24 3 chr4 51768278 51768573 -132520089 - AluJb SINE Alu -11 301 1 2232 117 0 13 chr4 51768721 51769030 -132519632 - AluSx SINE Alu -7 305 1 266 273 50 10 chr4 51769094 51769193 -132519469 - L2 LINE L2 -5 3308 3206 1793 169 3 7 chr4 51769225 51769532 -132519130 + AluJo SINE Alu 3 308 -4 1960 151 3 0 chr4 51770127 51770412 -132518250 + AluSx SINE Alu 1 286 -26 189 74 0 0 chr4 51770424 51770451 -132518211 + (CATA)n Simple_repeat Simple_repeat 3 29 0 1264 197 0 21 chr4 51770517 51770751 -132517911 + AluJb SINE Alu 6 234 -78 294 152 0 0 chr4 51770958 51771036 -132517626 + AluJb SINE Alu 237 314 0 504 219 271 29 chr4 51771431 51771641 -132517021 - MIR SINE MIR 0 262 2 545 282 115 47 chr4 51772678 51773239 -132515423 + L2 LINE L2 2647 3313 0 461 237 173 96 chr4 51773288 51773705 -132514957 + MLT1J2 LTR MaLR 1 449 -1 540 295 63 16 chr4 51774105 51774377 -132514285 + L2 LINE L2 2698 2978 -335 1186 207 109 39 chr4 51774837 51774997 -132513665 + L1ME3 LINE L1 5780 5927 -235 2173 114 7 10 chr4 51774997 51775296 -132513366 + AluSx SINE Alu 1 298 -14 1186 207 109 39 chr4 51775296 51775492 -132513170 + L1ME3 LINE L1 5927 6161 -1 381 349 33 46 chr4 51775505 51775867 -132512795 + L2 LINE L2 2727 3075 -197 2234 199 45 4 chr4 51775867 51776350 -132512312 - L1MA4 LINE L1 -11 6289 5787 381 349 33 46 chr4 51776350 51776532 -132512130 + L2 LINE L2 3075 3258 -14 1926 165 3 7 chr4 51776702 51777011 -132511651 - AluJo SINE Alu -4 308 1 558 263 105 5 chr4 51777153 51777360 -132511302 - MIR SINE MIR -5 257 32 189 316 63 13 chr4 51778935 51779014 -132509648 - MIR3 SINE MIR -14 194 112 352 310 150 0 chr4 51779043 51779143 -132509519 + L2 LINE L2 3158 3272 0 1982 158 0 0 chr4 51780261 51780572 -132508090 + AluJb SINE Alu 1 311 -1 2242 113 0 0 chr4 51780680 51781003 -132507659 + AluSx SINE Alu 1 312 0 251 278 28 0 chr4 51781341 51781413 -132507249 + GA-rich Low_complexity Low_complexity 2 75 0 236 219 192 14 chr4 51782123 51782196 -132506466 - Charlie7 DNA MER1_type -2522 90 5 2303 220 41 26 chr4 51782361 51783144 -132505518 + L1ME1 LINE L1 4804 5604 -562 2137 107 10 0 chr4 51783144 51783435 -132505227 - AluSx SINE Alu -18 294 1 2303 220 41 26 chr4 51783435 51783739 -132504923 + L1ME1 LINE L1 5604 5902 -264 31287 100 9 17 chr4 51783740 51788633 -132500029 + L1P3 LINE L1 1389 7027 -565 2205 109 0 3 chr4 51789345 51789625 -132499037 + AluSg SINE Alu 1 281 -29 180 0 0 0 chr4 51789625 51789645 -132499017 + (CA)n Simple_repeat Simple_repeat 1 20 0 2205 109 0 3 chr4 51789645 51789658 -132499004 + AluSg SINE Alu 281 293 -17 1080 248 108 49 chr4 51790187 51790697 -132497965 + L2 LINE L2 2729 3274 -39 918 266 104 3 chr4 51791491 51791788 -132496874 + L1ME LINE L1 5478 5804 -317 201 245 0 0 chr4 51791859 51791912 -132496750 + (TATATG)n Simple_repeat Simple_repeat 4 56 0 189 254 119 0 chr4 51792968 51793035 -132495627 + L2 LINE L2 2440 2514 -800 495 178 59 0 chr4 51793128 51793229 -132495433 + MLT1J1 LTR MaLR 6 112 -334 2046 122 3 20 chr4 51793830 51794134 -132494528 - AluSx SINE Alu -13 299 1 1059 240 132 39 chr4 51794933 51795342 -132493320 + L2 LINE L2 27 473 -2841 494 316 47 5 chr4 51795714 51795929 -132492733 - MER102a DNA MER1_type 0 330 107 1796 166 7 0 chr4 51795932 51796209 -132492453 + AluJo SINE Alu 1 279 -33 746 179 23 0 chr4 51796210 51796383 -132492279 + GA-rich Low_complexity Low_complexity 1 177 0 764 253 6 0 chr4 51796447 51796605 -132492057 + MIR SINE MIR 7 165 -97 198 329 140 28 chr4 51796810 51796953 -132491709 - L2 LINE L2 -160 3112 2954 648 184 0 16 chr4 51796958 51797083 -132491579 - LTR33 LTR ERVL 0 521 399 392 195 30 146 chr4 51797170 51797334 -132491328 - LTR33 LTR ERVL -339 182 38 419 230 42 61 chr4 51798269 51798434 -132490228 + MER103 DNA DNA 3 164 -2 285 288 0 0 chr4 51799528 51799594 -132489068 + L2 LINE L2 3248 3313 0 2250 112 3 3 chr4 51800170 51800482 -132488180 + AluSx SINE Alu 1 312 0 389 250 9 46 chr4 51801269 51801377 -132487285 + L2 LINE L2 3173 3276 -37 20154 56 4 0 chr4 51801525 51804041 -132484621 - L1P LINE L1 -3122 3024 499 21 0 0 0 chr4 51805031 51805052 -132483610 + AT_rich Low_complexity Low_complexity 1 21 0 1103 99 7 0 chr4 51805452 51805593 -132483069 - AluSp SINE Alu -171 142 1 2386 100 0 3 chr4 51805608 51805919 -132482743 - AluSg SINE Alu 0 310 1 635 190 0 9 chr4 51805927 51806043 -132482619 + MLT-int LTR MaLR 432 546 -1189 228 140 0 60 chr4 51806044 51806094 -132482568 - Charlie1 DNA MER1_type -2271 490 444 635 182 0 76 chr4 51806096 51806228 -132482434 + MLT-int LTR MaLR 618 739 -996 2232 223 24 15 chr4 51806332 51806798 -132481864 + MLT-int LTR MaLR 1262 1731 -4 1264 197 0 21 chr4 51806949 51807183 -132481479 - AluJb SINE Alu -78 234 6 189 74 0 0 chr4 51807249 51807276 -132481386 + (TATG)n Simple_repeat Simple_repeat 3 29 0 2030 113 3 21 chr4 51807288 51807579 -132481083 - AluSx SINE Alu -26 286 1 851 276 86 3 chr4 51807579 51807883 -132480779 + L1ME1 LINE L1 5574 5902 -264 * 3286 91 55 38 chr4 51807880 51808385 -132480277 + L1PA4 LINE L1 1045 1558 -4903 17807 44 7 2 chr4 51808485 51811333 -132477329 + L1PA4 LINE L1 3619 6468 -2 1643 188 56 0 chr4 51862634 51862921 -132425741 - AluJo SINE Alu -7 305 3 1140 268 151 7 chr4 51863169 51863666 -132424996 - L2 LINE L2 0 3313 2692 414 229 76 17 chr4 51863797 51863915 -132424747 - L2 LINE L2 -1426 1888 1764 1938 153 0 23 chr4 51864196 51864496 -132424166 + AluSx SINE Alu 1 293 -19 916 217 35 15 chr4 51864938 51865136 -132423526 + MIR SINE MIR 19 220 -42 1795 139 32 18 chr4 51865323 51865425 -132423237 + AluSx SINE Alu 21 120 -192 195 69 0 0 chr4 51865425 51865454 -132423208 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1795 139 32 18 chr4 51865454 51865631 -132423031 + AluSx SINE Alu 120 304 -8 519 250 0 0 chr4 51866041 51866141 -132422521 + L2 LINE L2 3205 3304 -9 21 0 0 0 chr4 51866376 51866397 -132422265 + AT_rich Low_complexity Low_complexity 1 21 0 650 165 9 9 chr4 51866516 51866631 -132422031 + FLAM_C SINE Alu 16 130 -13 382 221 39 10 chr4 51867288 51867392 -132421270 + L1MC4 LINE L1 7787 7893 -149 24 0 0 0 chr4 51867442 51867466 -132421196 + AT_rich Low_complexity Low_complexity 1 24 0 210 346 96 10 chr4 51868123 51868227 -132420435 + MIR SINE MIR 20 132 -130 1670 191 33 7 chr4 51868227 51868552 -132420110 - AluJo SINE Alu 0 312 1 986 246 149 17 chr4 51868673 51868775 -132419887 + L1ME1 LINE L1 5382 5469 -697 1835 155 12 81 chr4 51868775 51869194 -132419468 - MLT1B LTR MaLR 0 390 1 986 246 149 17 chr4 51869194 51869566 -132419096 + L1ME1 LINE L1 5469 5919 -247 1081 201 118 35 chr4 51869651 51869965 -132418697 + MLT1D LTR MaLR 139 478 -27 611 308 82 19 chr4 51870083 51870401 -132418261 - L2 LINE L2 -1661 1653 1316 1635 170 22 62 chr4 51870455 51870778 -132417884 - AluJo SINE Alu -2 310 1 2300 31 42 21 chr4 51870885 51871174 -132417488 + AluY SINE Alu 5 299 -12 383 364 98 7 chr4 51872237 51872380 -132416282 + L2 LINE L2 3116 3271 -1 182 368 118 13 chr4 51873825 51874053 -132414609 + L2 LINE L2 2447 2698 -616 273 259 71 35 chr4 51874519 51874604 -132414058 + L2 LINE L2 3182 3269 -3 2313 98 0 0 chr4 51874620 51874916 -132413746 + AluSx SINE Alu 1 296 -16 447 347 54 60 chr4 51875159 51875867 -132412795 - L2 LINE L2 -215 3057 2340 2349 158 12 65 chr4 51875884 51876379 -132412283 - L1MB2 LINE L1 -9 6162 5694 438 300 75 5 chr4 51876741 51876941 -132411721 + MLT1J LTR MaLR 1 214 -297 1081 174 13 30 chr4 51876963 51877193 -132411469 - L1MB2 LINE L1 -498 5673 5448 194 325 165 21 chr4 51877193 51877436 -132411226 - L2 LINE L2 -968 2346 2069 1828 156 3 52 chr4 51877738 51877916 -132410746 - AluJo SINE Alu -1 311 155 2246 101 0 7 chr4 51877916 51878214 -132410448 - AluY SINE Alu -15 296 1 1828 156 3 52 chr4 51878214 51878362 -132410300 - AluJo SINE Alu -157 155 1 1154 222 49 49 chr4 51878936 51879301 -132409361 - MLT1A1 LTR MaLR 0 365 1 203 229 29 86 chr4 51879336 51879406 -132409256 - MER91B DNA MER1_type -115 75 10 241 309 0 53 chr4 51879412 51879506 -132409156 - L2 LINE L2 -491 2823 2735 349 318 0 75 chr4 51879524 51879697 -132408965 - L2 LINE L2 -739 2575 2416 5983 108 3 63 chr4 51879809 51880032 -132408630 - L1PA8A LINE L1 -171 5960 5725 1537 95 0 0 chr4 51880032 51880243 -132408419 - L1PA8 LINE L1 -1 6171 5961 5983 108 3 63 chr4 51880243 51881780 -132406882 - L1PA8A LINE L1 -406 5725 4315 * 7101 227 33 79 chr4 51881777 51883684 -132404978 - L1 LINE L1 -2299 4868 2874 2289 108 0 3 chr4 51883684 51883998 -132404664 - AluSq SINE Alu 0 313 1 7101 227 33 79 chr4 51883998 51884977 -132403685 - L1 LINE L1 -4293 2874 1851 800 158 0 27 chr4 51884977 51885123 -132403539 - FLAM_C SINE Alu -1 142 1 7101 227 33 79 chr4 51885123 51887568 -132401094 - L1 LINE L1 -5316 1851 2 227 345 55 48 chr4 51888292 51888457 -132400205 - L3b LINE CR1 -146 1437 1272 1052 239 31 4 chr4 51888947 51889207 -132399455 + L1 LINE L1 3833 4099 -2047 24957 93 6 6 chr4 51889216 51893430 -132395232 - L1PA7 LINE L1 -13 6141 1846 39461 90 4 24 chr4 51893437 51899336 -132389326 + L1PA13 LINE L1 7 5830 -331 2890 9 0 6 chr4 51899336 51899652 -132389010 + AluYb8 SINE Alu 1 314 -4 23136 41 17 1 chr4 51899668 51905661 -132383001 + L1PA3 LINE L1 1 6155 0 1608 114 13 0 chr4 51905675 51905912 -132382750 + L1PA13 LINE L1 5815 6054 -109 1701 138 28 49 chr4 51905915 51906240 -132382422 + THE1C LTR MaLR 1 318 -57 1037 79 0 0 chr4 51906271 51906397 -132382265 - AluSq/x SINE Alu -186 126 1 421 228 30 0 chr4 51906437 51906538 -132382124 + MER3 DNA MER1_type 21 124 -85 2232 85 4 0 chr4 51906552 51906928 -132381734 - AluY SINE Alu 0 378 2 6299 38 12 7 chr4 51906940 51907715 -132380947 - SVA Other Other 0 1386 635 1257 140 0 0 chr4 51907829 51908007 -132380655 + AluSg/x SINE Alu 111 288 -24 2318 101 0 0 chr4 51908705 51909001 -132379661 - AluSx SINE Alu -16 296 1 1137 263 135 5 chr4 51910093 51910485 -132378177 + L2 LINE L2 2831 3273 -40 181 339 183 0 chr4 51910750 51910865 -132377797 + L2 LINE L2 3137 3272 0 418 280 70 0 chr4 51910974 51911074 -132377588 - MIR3 SINE MIR -28 180 74 1602 177 4 14 chr4 51911091 51911368 -132377294 + AluJb SINE Alu 1 274 -38 387 0 0 0 chr4 51911376 51911419 -132377243 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 2244 111 3 0 chr4 51911424 51911731 -132376931 + AluSx SINE Alu 1 308 -4 195 129 0 0 chr4 51914304 51914335 -132374327 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1870 187 118 15 chr4 51915075 51915690 -132372972 + L1MB7 LINE L1 5439 6175 -9 2164 110 0 38 chr4 51916871 51917189 -132371473 - AluSg1 SINE Alu -3 306 1 696 210 55 59 chr4 51918071 51918124 -132370538 + L1MDa LINE L1 2345 2397 -4143 2164 114 3 3 chr4 51918124 51918423 -132370239 + AluSx SINE Alu 1 299 -13 696 210 55 59 chr4 51918423 51918640 -132370022 + L1MDa LINE L1 2397 2614 -3926 * 41194 73 4 2 chr4 51918626 51924754 -132363908 + L1PA6 LINE L1 11 6153 -1 2331 108 3 0 chr4 51924904 51925210 -132363452 - AluSq SINE Alu -6 307 1 259 323 62 0 chr4 51925294 51925359 -132363303 - L2 LINE L2 -87 3185 3117 814 251 175 53 chr4 51925967 51926479 -132362183 - L2 LINE L2 -5 3308 2740 2105 115 0 21 chr4 51927354 51927641 -132361021 - AluSx SINE Alu -15 297 17 209 265 29 29 chr4 51927830 51927898 -132360764 - MIR3 SINE MIR -30 178 111 348 217 61 20 chr4 51927899 51928028 -132360634 - MLT1L LTR MaLR 0 615 377 381 169 253 0 chr4 51928179 51928287 -132360375 - MLT1L LTR MaLR -339 276 150 782 287 69 20 chr4 51928515 51928762 -132359900 + MIR SINE MIR 4 262 0 326 300 11 0 chr4 51928765 51928855 -132359807 + MLT1K LTR MaLR 4 94 -494 371 184 26 0 chr4 51929118 51929194 -132359468 + LTR67 LTR ERVL 458 535 -22 548 275 93 51 chr4 51929312 51929350 -132359312 + MIR SINE MIR 6 41 -221 2133 135 0 0 chr4 51929350 51929647 -132359015 - AluSx SINE Alu -15 297 1 548 275 93 51 chr4 51929647 51929844 -132358818 + MIR SINE MIR 41 251 -11 21 0 0 0 chr4 51930148 51930169 -132358493 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr4 51930538 51930573 -132358089 + AT_rich Low_complexity Low_complexity 1 35 0 281 200 17 17 chr4 51931601 51931661 -132357001 + L2 LINE L2 3200 3259 -54 4831 86 12 189 chr4 51931662 51932660 -132356002 - LTR12 LTR ERV1 -1 825 5 2375 194 44 29 chr4 51932676 51933269 -132355393 - pTR5 LTR ERV1 -1094 1344 743 320 143 36 0 chr4 51933269 51933325 -132355337 + L2 LINE L2 3256 3313 0 831 189 63 0 chr4 51933419 51933562 -132355100 - FRAM SINE Alu 0 40 1 353 104 0 0 chr4 51933809 51933857 -132354805 + MLT2A1 LTR ERVL 395 442 -2 508 264 115 5 chr4 51933985 51934154 -132354508 - MIR SINE MIR -43 219 37 714 283 48 12 chr4 51934214 51934549 -132354113 + L2 LINE L2 2690 3036 -277 2748 175 27 33 chr4 51934549 51935070 -132353592 - MLT1F1 LTR MaLR -34 533 16 1744 144 7 4 chr4 51935081 51935358 -132353304 - AluJb SINE Alu -30 282 5 1156 66 0 0 chr4 51935369 51935520 -132353142 - AluY SINE Alu -7 304 154 319 329 46 13 chr4 51935842 51935994 -132352668 - L1ME4a LINE L1 -227 5894 5738 315 305 35 58 chr4 51936525 51936699 -132351963 + MIR3 SINE MIR 30 199 -9 281 198 0 37 chr4 51937473 51937554 -132351108 + CT-rich Low_complexity Low_complexity 3 80 0 203 239 0 0 chr4 51937892 51937938 -132350724 - MIR SINE MIR -108 154 109 198 156 0 0 chr4 51937945 51937977 -132350685 + L2 LINE L2 3272 3303 -10 194 294 120 43 chr4 51937983 51938075 -132350587 - MIR3 SINE MIR -97 111 13 209 186 0 23 chr4 51938077 51938120 -132350542 + (CAGA)n Simple_repeat Simple_repeat 2 43 0 223 274 16 16 chr4 51938298 51938360 -132350302 + MIR SINE MIR 200 261 -1 373 296 275 35 chr4 51938565 51939365 -132349297 - L2 LINE L2 -231 3041 2035 1490 63 9 10 chr4 51939519 51939726 -132348936 - L1PA4 LINE L1 -82 6073 5874 967 117 132 143 chr4 51939735 51940001 -132348661 - AluJb SINE Alu -45 267 5 952 178 17 11 chr4 51940002 51940182 -132348480 - MLT1B LTR MaLR -209 181 1 2238 73 3 0 chr4 51940258 51940546 -132348116 - AluSp SINE Alu -24 289 1 1114 257 80 15 chr4 51940642 51940981 -132347681 + MLT1G LTR MaLR 10 370 -220 588 232 78 7 chr4 51941789 51941931 -132346731 + MIR SINE MIR 1 152 -110 24 53 0 0 chr4 51941953 51941991 -132346671 + AT_rich Low_complexity Low_complexity 1 38 0 188 235 59 59 chr4 51941991 51942059 -132346603 + MIR SINE MIR 175 242 -20 212 261 67 25 chr4 51942316 51942435 -132346227 - L2 LINE L2 -1139 2175 2052 207 208 19 0 chr4 51942535 51942588 -132346074 + (TG)n Simple_repeat Simple_repeat 2 55 0 37 26 0 0 chr4 51944131 51944170 -132344492 + AT_rich Low_complexity Low_complexity 1 39 0 390 125 16 16 chr4 51944178 51944242 -132344420 - AluJ/FRAM SINE Alu -16 286 223 495 278 73 49 chr4 51944364 51944569 -132344093 + L3 LINE CR1 1262 1471 -106 491 329 57 8 chr4 51945565 51945811 -132342851 + MIR SINE MIR 2 259 -3 1221 80 0 0 chr4 51945980 51946131 -132342531 + THE1A LTR MaLR 205 355 0 10083 97 11 5 chr4 51946131 51947509 -132341153 + THE1A-int LTR MaLR 1 1386 -194 738 226 32 0 chr4 51947616 51947771 -132340891 + MIR SINE MIR 27 186 -76 554 245 35 31 chr4 51947960 51948221 -132340441 - L1M4 LINE L1 -1588 4558 4297 180 281 16 16 chr4 51948508 51948572 -132340090 - L2 LINE L2 -81 3232 3169 660 232 28 0 chr4 51948590 51948732 -132339930 - MER58A DNA MER1_type 0 224 79 2848 90 0 3 chr4 51949284 51949649 -132339013 - THE1B LTR MaLR 0 364 1 810 154 88 0 chr4 51950112 51950248 -132338414 + FRAM SINE Alu 1 146 -30 564 136 0 68 chr4 51950619 51950722 -132337940 - MER67A LTR ERV1 -447 96 1 337 332 63 39 chr4 51951002 51951415 -132337247 + L2 LINE L2 2256 2678 -636 239 267 193 24 chr4 51951430 51951684 -132336978 + L2 LINE L2 2779 3076 -237 1237 101 5 0 chr4 51951877 51952066 -132336596 + AluY SINE Alu 120 309 -2 213 132 26 0 chr4 51953217 51953255 -132335407 + G-rich Low_complexity Low_complexity 1 39 0 1750 170 0 0 chr4 51953983 51954300 -132334362 + AluJb SINE Alu 1 317 0 385 331 103 17 chr4 51954620 51954795 -132333867 - MIR SINE MIR -2 260 71 2068 132 3 0 chr4 51954806 51955101 -132333561 + AluSx SINE Alu 1 296 -16 325 277 87 41 chr4 51955217 51955459 -132333203 + L1ME LINE L1 5543 5795 -326 4147 147 55 11 chr4 51955878 51956574 -132332088 + MER44D DNA MER2_type 1 598 -7 225 216 14 68 chr4 51956617 51956691 -132331971 + L2 LINE L2 3234 3303 -10 593 209 124 13 chr4 51957090 51957243 -132331419 - MER5B DNA MER1_type -8 170 1 244 259 65 9 chr4 51957707 51957815 -132330847 - L2 LINE L2 -213 3059 2946 459 248 19 76 chr4 51957830 51957987 -132330675 + MIR3 SINE MIR 54 201 -7 303 185 32 6 chr4 51958666 51958823 -132329839 + (TG)n Simple_repeat Simple_repeat 2 162 0 227 233 17 35 chr4 51958849 51958965 -132329697 + (TG)n Simple_repeat Simple_repeat 2 115 0 781 188 8 0 chr4 51959108 51959241 -132329421 - AluJo SINE Alu -92 220 87 532 313 18 18 chr4 51959309 51959472 -132329190 - MIR3 SINE MIR -10 198 36 573 283 127 19 chr4 51959535 51959747 -132328915 - MIR SINE MIR -25 237 3 421 238 150 69 chr4 51960691 51960879 -132327783 + MIR SINE MIR 28 224 -38 1739 116 17 20 chr4 51960947 51961239 -132327423 + AluSx SINE Alu 1 291 -21 363 292 116 25 chr4 51961258 51961461 -132327201 - MIR SINE MIR -4 258 37 254 258 0 16 chr4 51962030 51962092 -132326570 + CT-rich Low_complexity Low_complexity 2 62 0 754 281 0 0 chr4 51962190 51962361 -132326301 - MIR SINE MIR -90 172 2 190 308 209 33 chr4 51962401 51962492 -132326170 - L3b LINE CR1 -34 1549 1443 191 36 36 0 chr4 51963361 51963389 -132325273 + (TTG)n Simple_repeat Simple_repeat 2 30 0 634 136 56 8 chr4 51963616 51963741 -132324921 - AluSq/x SINE Alu -168 145 15 207 368 109 53 chr4 51964427 51964542 -132324120 + L2 LINE L2 988 1095 -2219 2253 61 3 7 chr4 51964542 51964839 -132323823 - AluSg SINE Alu -14 296 1 207 368 109 53 chr4 51964839 51965136 -132323526 + L2 LINE L2 1095 1423 -1891 1159 80 105 0 chr4 51965427 51965589 -132323073 - AluSp SINE Alu -134 179 1 1681 182 0 13 chr4 51965667 51965974 -132322688 + AluJb SINE Alu 1 303 -9 545 201 114 55 chr4 51966173 51966392 -132322270 - L1MC4 LINE L1 0 8042 7811 26 30 0 0 chr4 51966402 51966435 -132322227 + AT_rich Low_complexity Low_complexity 1 33 0 440 180 172 0 chr4 51966609 51966738 -132321924 - L1ME2 LINE L1 0 6166 6015 260 227 0 0 chr4 51966741 51966785 -132321877 - U6 snRNA snRNA -1 106 63 426 231 112 30 chr4 51966931 51967065 -132321597 + MER58A DNA MER1_type 1 145 0 356 253 168 23 chr4 51967459 51967763 -132320899 + L1ME4a LINE L1 5709 6056 -65 198 143 0 0 chr4 51967797 51967832 -132320830 + (TG)n Simple_repeat Simple_repeat 2 36 0 1992 115 4 0 chr4 51967832 51968111 -132320551 - AluSx SINE Alu -32 280 1 384 203 246 8 chr4 51968425 51968543 -132320119 + MER5A DNA MER1_type 9 154 -35 3492 131 34 20 chr4 51968897 51969494 -132319168 - MER6A DNA MER2_type 0 605 1 198 0 0 0 chr4 51969593 51969615 -132319047 + (T)n Simple_repeat Simple_repeat 1 22 0 1526 153 35 0 chr4 51969736 51969907 -132318755 - AluJo SINE Alu -13 299 115 207 0 0 0 chr4 51969907 51969930 -132318732 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1526 153 35 0 chr4 51969930 51970012 -132318650 - AluJo SINE Alu -197 115 37 459 282 74 25 chr4 51970318 51970481 -132318181 + L2 LINE L2 2560 2730 -584 316 243 236 28 chr4 51970550 51970694 -132317968 + MLT1H LTR MaLR 1 174 -375 610 304 135 22 chr4 51971186 51971630 -132317032 - L2 LINE L2 0 3313 2820 255 272 99 12 chr4 51972683 51972764 -132315898 - MIR SINE MIR -13 249 162 2264 166 43 86 chr4 51973108 51973667 -132314995 + MER44D DNA MER2_type 1 590 -15 531 238 19 0 chr4 51973674 51973779 -132314883 + MIR SINE MIR 154 260 -2 407 303 88 66 chr4 51975571 51975888 -132312774 - L3 LINE CR1 -3 1574 1251 1709 193 98 28 chr4 51976117 51976356 -132312306 - MLT1C LTR MaLR 0 467 246 2419 118 25 6 chr4 51976356 51976712 -132311950 + THE1B LTR MaLR 1 363 -1 1709 193 98 28 chr4 51976712 51976902 -132311760 - MLT1C LTR MaLR -221 246 8 223 279 23 35 chr4 51976916 51977002 -132311660 + CT-rich Low_complexity Low_complexity 4 88 0 284 302 101 19 chr4 51978387 51978546 -132310116 + MIR3 SINE MIR 30 201 -7 242 333 116 0 chr4 51978697 51978826 -132309836 - MIR SINE MIR -10 252 109 398 322 129 0 chr4 51978889 51979060 -132309602 - MIR SINE MIR 0 262 70 1521 138 40 40 chr4 51979238 51979514 -132309148 + AluJo SINE Alu 1 276 -36 336 64 0 0 chr4 51979522 51979569 -132309093 + (CAAAC)n Simple_repeat Simple_repeat 2 48 0 295 261 120 49 chr4 51979746 51979888 -132308774 + MIR3 SINE MIR 11 162 -46 557 298 21 0 chr4 51979938 51980079 -132308583 - MIR SINE MIR -90 172 29 32 0 0 0 chr4 51980700 51980732 -132307930 + AT_rich Low_complexity Low_complexity 1 32 0 1040 166 77 75 chr4 51982022 51982295 -132306367 + MER63B DNA MER1_type 12 288 -774 1547 156 42 3 chr4 51982295 51982578 -132306084 - AluJo SINE Alu -18 294 1 1040 166 77 75 chr4 51982578 51982666 -132305996 + MER63B DNA MER1_type 288 374 -62 389 222 0 77 chr4 51982867 51982984 -132305678 + MER58 DNA MER1_type 1 108 -233 993 140 0 83 chr4 51983126 51983355 -132305307 + L1MB8 LINE L1 5759 5967 -207 557 290 7 0 chr4 51983973 51984128 -132304534 - LTR33 LTR ERVL -53 468 313 523 259 113 16 chr4 51984193 51984378 -132304284 - LTR33 LTR ERVL -305 216 14 208 238 32 0 chr4 51984662 51984725 -132303937 - L2 LINE L2 -1080 2234 2170 324 0 0 0 chr4 51985194 51985230 -132303432 + (TG)n Simple_repeat Simple_repeat 2 37 0 232 136 77 13 chr4 51985230 51985385 -132303277 + (TA)n Simple_repeat Simple_repeat 1 165 0 1592 174 0 11 chr4 51985391 51985672 -132302990 - AluJo SINE Alu -30 282 5 470 261 8 8 chr4 51985789 51985908 -132302754 - MER113 DNA MER1_type? -6 515 397 437 194 112 53 chr4 51985935 51986105 -132302557 - MER113 DNA MER1_type? -190 331 152 500 250 48 0 chr4 51986333 51986437 -132302225 + MER81 DNA DNA 1 109 -5 1753 107 0 0 chr4 51986678 51986911 -132301751 - AluSc SINE Alu -76 233 1 384 284 9 33 chr4 51986924 51987066 -132301596 - MIR SINE MIR -62 146 16 293 301 37 31 chr4 51987229 51987392 -132301270 + MIR3 SINE MIR 11 174 -34 398 187 19 28 chr4 51987480 51987587 -132301075 + MER113 DNA MER1_type? 8 113 -408 471 283 59 11 chr4 51987650 51987837 -132300825 - L2 LINE L2 0 3313 3118 244 140 0 0 chr4 51987944 51987994 -132300668 + Alu SINE Alu 254 303 0 334 284 101 34 chr4 51988264 51988412 -132300250 + MLT1-int LTR MaLR 692 849 -522 476 287 123 49 chr4 51988653 51988977 -132299685 + MLT1-int LTR MaLR 1023 1370 -1 203 202 5 96 chr4 51989056 51989254 -132299408 + (TAG)n Simple_repeat Simple_repeat 1 180 0 563 254 21 7 chr4 51989318 51989460 -132299202 + MIR SINE MIR 7 150 -112 409 279 22 50 chr4 51990048 51990227 -132298435 + MER5B DNA MER1_type 4 177 -1 1932 146 3 10 chr4 51990846 51991147 -132297515 - AluSx SINE Alu -13 299 1 912 161 274 0 chr4 51991168 51991495 -132297167 + Charlie1b DNA MER1_type 37 455 -68 30 59 0 0 chr4 51992380 51992431 -132296231 + AT_rich Low_complexity Low_complexity 1 51 0 768 176 141 18 chr4 51992685 51992855 -132295807 + AluSg/x SINE Alu 119 309 -1 1364 157 27 0 chr4 51993163 51993386 -132295276 - L1MC1 LINE L1 0 6333 6105 1764 177 0 19 chr4 51993396 51993712 -132294950 + AluJb SINE Alu 1 310 -2 1542 147 188 0 chr4 51993713 51994022 -132294640 - MSTB1 LTR MaLR -99 333 1 4627 127 43 6 chr4 51994022 51994739 -132293923 - L1MC1 LINE L1 -265 6068 5325 2578 49 7 0 chr4 51994906 51995210 -132293452 - AluY SINE Alu -5 306 1 46 45 0 0 chr4 51995584 51995651 -132293011 + AT_rich Low_complexity Low_complexity 1 67 0 562 120 0 0 chr4 51995750 51995825 -132292837 + AluJ/FLAM SINE Alu 3 77 -235 272 274 14 0 chr4 51996364 51996437 -132292225 + MIR SINE MIR 100 173 -89 527 231 122 124 chr4 51996513 51997006 -132291656 + LTR33 LTR ERVL 19 510 -11 193 261 46 31 chr4 51997007 51997072 -132291590 + MIR SINE MIR 195 260 -2 1044 193 147 42 chr4 51997233 51997802 -132290860 + Charlie1a DNA MER1_type 59 741 -714 232 304 160 53 chr4 51999392 51999655 -132289007 - L2 LINE L2 -12 3260 2970 1161 155 10 5 chr4 52001215 52001415 -132287247 + 7SLRNA srpRNA srpRNA 1 201 -119 1887 132 0 0 chr4 52003018 52003284 -132285378 - AluSx SINE Alu -12 300 35 1074 92 7 7 chr4 52003407 52003549 -132285113 - AluSq/x SINE Alu -171 142 1 629 265 191 64 chr4 52003614 52003969 -132284693 - L2 LINE L2 -206 3107 2798 333 0 0 0 chr4 52003969 52004006 -132284656 + (GA)n Simple_repeat Simple_repeat 1 37 0 629 265 191 64 chr4 52004006 52004417 -132284245 - L2 LINE L2 -515 2798 2218 2197 110 7 0 chr4 52004437 52004729 -132283933 - AluSg SINE Alu -16 294 1 208 355 102 18 chr4 52005289 52005455 -132283207 + L2 LINE L2 2652 2831 -483 2290 113 57 28 chr4 52005522 52005876 -132282786 + THE1B LTR MaLR 1 364 0 1882 162 45 11 chr4 52006330 52006688 -132281974 + L1MD1 LINE L1 5860 6229 -13 2206 108 3 3 chr4 52007011 52007306 -132281356 - AluSx SINE Alu -17 295 1 258 305 0 0 chr4 52008344 52008449 -132280213 + (TG)n Simple_repeat Simple_repeat 2 106 0 294 324 23 6 chr4 52009757 52009933 -132278729 + GA-rich Low_complexity Low_complexity 2 180 0 231 333 133 24 chr4 52010345 52010510 -132278152 + L2 LINE L2 2834 3016 -256 1814 166 37 0 chr4 52010622 52010917 -132277745 - AluJb SINE Alu -6 306 1 211 252 92 101 chr4 52011502 52011621 -132277041 - MIR SINE MIR -70 138 21 526 284 21 58 chr4 52012644 52012740 -132275922 - MIR SINE MIR -19 243 156 1650 171 27 30 chr4 52012740 52013039 -132275623 - AluJb SINE Alu -12 300 3 526 284 21 58 chr4 52013039 52013132 -132275530 - MIR SINE MIR -106 156 61 199 288 15 0 chr4 52013580 52013646 -132275016 - MIR SINE MIR -1 261 195 3810 114 67 26 chr4 52013749 52014391 -132274271 - Tigger1 DNA MER2_type 0 2418 1751 991 74 0 0 chr4 52014391 52014513 -132274149 - AluY SINE Alu -16 295 174 11241 111 24 33 chr4 52014514 52015308 -132273354 - Tigger1 DNA MER2_type -654 1764 964 2250 96 0 20 chr4 52015308 52015611 -132273051 + AluSx SINE Alu 1 297 -15 11241 111 24 33 chr4 52015611 52016541 -132272121 - Tigger1 DNA MER2_type -1454 964 56 255 296 112 0 chr4 52017047 52017145 -132271517 - L2 LINE L2 -4 3268 3160 884 289 72 29 chr4 52020186 52020560 -132268102 + L3 LINE CR1 1187 1576 -1 1036 228 42 15 chr4 52021276 52021539 -132267123 - MLT1A1 LTR MaLR -95 270 1 2609 117 31 0 chr4 52022041 52022393 -132266269 - THE1B LTR MaLR 0 364 2 3282 105 14 0 chr4 52022554 52022992 -132265670 - L1PB3 LINE L1 -1 6153 5710 207 193 36 36 chr4 52024892 52024975 -132263687 + (TTAA)n Simple_repeat Simple_repeat 1 83 0 676 184 79 0 chr4 52026225 52026339 -132262323 + FLAM_C SINE Alu 2 124 -19 259 279 16 0 chr4 52028001 52028062 -132260600 - L2 LINE L2 -5 3267 3206 401 301 116 0 chr4 52028905 52029051 -132259611 + MER91A DNA MER1_type 1 163 -33 2066 139 0 3 chr4 52029099 52029400 -132259262 - AluSx SINE Alu -12 300 1 2270 107 0 3 chr4 52030347 52030646 -132258016 + AluSx SINE Alu 1 298 -14 1062 201 98 0 chr4 52030908 52031112 -132257550 - MER58A DNA MER1_type 0 224 1 232 175 0 0 chr4 52031256 52031296 -132257366 + L1ME LINE L1 5754 5793 -328 360 307 39 13 chr4 52031302 52031455 -132257207 - HAL1b LINE L1 -823 525 369 3332 114 0 2 chr4 52031598 52032053 -132256609 - L1PA13 LINE L1 -7 6156 5703 222 37 0 0 chr4 52032303 52032330 -132256332 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 219 103 0 0 chr4 52032712 52032751 -132255911 + (TTG)n Simple_repeat Simple_repeat 1 39 0 23 0 0 0 chr4 52032810 52032833 -132255829 + AT_rich Low_complexity Low_complexity 1 23 0 34225 42 5 3 chr4 52032914 52039055 -132249607 - L1PA4 LINE L1 0 6155 6 418 165 110 28 chr4 52040988 52041097 -132247565 + MER5C DNA MER1_type 205 322 -2 22 0 0 0 chr4 52041375 52041397 -132247265 + AT_rich Low_complexity Low_complexity 1 22 0 197 160 40 20 chr4 52042077 52042127 -132246535 + L2 LINE L2 3187 3237 -76 1115 216 365 9 chr4 52044525 52045076 -132243586 + LTR50 LTR ERVL 46 792 -3 661 259 97 9 chr4 52045412 52045640 -132243022 + LTR33 LTR ERVL 12 259 -262 253 178 22 0 chr4 52045607 52045652 -132243010 + LTR33 LTR ERVL 476 521 0 * 25 0 0 0 chr4 52046074 52046099 -132242563 + AT_rich Low_complexity Low_complexity 1 25 0 181 394 0 0 chr4 52046556 52046627 -132242035 + L2 LINE L2 3202 3272 0 1195 143 18 117 chr4 52046737 52047079 -132241583 - Charlie1 DNA MER1_type -5 2756 2449 1267 168 22 0 chr4 52047144 52047376 -132241286 + L1MB1 LINE L1 4858 5094 -1052 25 0 0 0 chr4 52047376 52047401 -132241261 + AT_rich Low_complexity Low_complexity 1 25 0 341 148 106 0 chr4 52047412 52047490 -132241172 + L1MB1 LINE L1 5775 5862 -301 * 5154 159 5 26 chr4 52047482 52048462 -132240200 + L1P LINE L1 900 1858 -4288 9758 40 2 0 chr4 52048468 52050436 -132238226 - L1PA4 LINE L1 0 6155 4183 1663 167 4 0 chr4 52050539 52050797 -132237865 - AluSq SINE Alu -54 259 1 322 218 20 7 chr4 52050804 52050950 -132237712 - L1MC4 LINE L1 -612 7430 7213 * 42545 38 21 2 chr4 52050949 52056982 -132231680 - L1PA2 LINE L1 -2 6153 1 2448 223 91 10 chr4 52056987 52057102 -132231560 - L1MC4 LINE L1 -832 7210 7106 180 77 0 0 chr4 52057102 52057128 -132231534 + (TATG)n Simple_repeat Simple_repeat 2 27 0 2448 223 91 10 chr4 52057128 52057492 -132231170 - L1MC4 LINE L1 -936 7106 6773 240 86 0 0 chr4 52057492 52057527 -132231135 + (CA)n Simple_repeat Simple_repeat 2 36 0 2448 223 91 10 chr4 52057527 52057552 -132231110 - L1MC4 LINE L1 -1269 6773 6751 1949 104 54 17 chr4 52057552 52057849 -132230813 - AluY SINE Alu -3 308 1 2448 223 91 10 chr4 52057849 52058037 -132230625 - L1MC4 LINE L1 -1291 6751 6460 480 295 14 71 chr4 52059092 52059271 -132229391 - L1M4 LINE L1 -2031 4115 3965 1964 142 0 0 chr4 52059271 52059586 -132229076 + AluJb SINE Alu 1 315 0 480 295 14 71 chr4 52059586 52059771 -132228891 - L1M4 LINE L1 -2181 3965 3771 1559 205 167 32 chr4 52060808 52061251 -132227411 + MER74A LTR ERVL 1 503 -55 2035 147 0 13 chr4 52061273 52061579 -132227083 - AluJo SINE Alu -10 302 1 1315 203 42 61 chr4 52062034 52062345 -132226317 + AluJb SINE Alu 1 305 -7 2582 89 6 12 chr4 52063274 52063659 -132225003 - MER41B LTR ERV1 -210 367 1 220 369 123 0 chr4 52063723 52063853 -132224809 + L2 LINE L2 3127 3272 0 457 180 11 0 chr4 52065073 52065162 -132223500 - AluSp/q SINE Alu -7 306 217 816 122 8 0 chr4 52065268 52065391 -132223271 + AluSg/x SINE Alu 178 301 -11 302 292 88 71 chr4 52066216 52066456 -132222206 + L3b LINE CR1 1270 1513 -70 201 161 0 0 chr4 52066982 52067013 -132221649 + (CTA)n Simple_repeat Simple_repeat 2 32 0 690 273 83 5 chr4 52067015 52067231 -132221431 - MIR SINE MIR -21 241 9 2154 122 3 0 chr4 52067799 52068095 -132220567 - AluSg SINE Alu -13 297 1 319 259 122 15 chr4 52068436 52068567 -132220095 - MIR SINE MIR -50 212 68 * 810 248 84 61 chr4 52068564 52068907 -132219755 - L2 LINE L2 -2 3311 2961 194 313 78 16 chr4 52068966 52069030 -132219632 - MIR SINE MIR -188 74 7 34 24 0 0 chr4 52071971 52072012 -132216650 + AT_rich Low_complexity Low_complexity 1 41 0 835 285 56 0 chr4 52072394 52072608 -132216054 - MIR SINE MIR -3 259 34 200 143 24 0 chr4 52072827 52072869 -132215793 + CT-rich Low_complexity Low_complexity 1 43 0 2218 103 0 0 chr4 52072996 52073286 -132215376 + AluSc SINE Alu 1 290 -19 21 0 0 0 chr4 52073547 52073568 -132215094 + AT_rich Low_complexity Low_complexity 1 21 0 206 335 160 16 chr4 52074653 52074841 -132213821 + L2 LINE L2 1755 1969 -1345 201 333 0 18 chr4 52074912 52074969 -132213693 + MIR SINE MIR 26 81 -181 424 323 63 0 chr4 52075583 52075741 -132212921 - L3 LINE CR1 -354 1223 1056 2378 73 0 13 chr4 52075779 52076081 -132212581 - AluSg SINE Alu -12 298 1 235 102 20 20 chr4 52076416 52076465 -132212197 + (GA)n Simple_repeat Simple_repeat 2 50 0 206 354 0 0 chr4 52076672 52076754 -132211908 - MIR SINE MIR -6 256 175 959 137 25 0 chr4 52077010 52077171 -132211491 + L1MB7 LINE L1 6020 6184 0 416 290 85 53 chr4 52077173 52077456 -132211206 + HAL1 LINE L1 1061 1352 -1155 297 117 17 0 chr4 52077470 52077530 -132211132 + L1PA15 LINE L1 6099 6159 -6 289 212 44 18 chr4 52078839 52078952 -132209710 + Tigger8 DNA MER2_type 224 339 -327 2046 152 0 0 chr4 52079101 52079404 -132209258 - AluSx SINE Alu -9 303 1 2051 139 35 14 chr4 52079619 52079986 -132208676 + THE1C LTR MaLR 1 375 0 801 168 44 0 chr4 52080222 52080359 -132208303 + FLAM_C SINE Alu 1 143 0 23 0 0 0 chr4 52080704 52080727 -132207935 + AT_rich Low_complexity Low_complexity 1 23 0 1075 122 83 0 chr4 52081094 52081250 -132207412 - AluSg/x SINE Alu -15 295 127 2053 120 27 0 chr4 52081253 52081552 -132207110 - AluSx SINE Alu -4 308 2 2338 72 3 3 chr4 52081560 52081867 -132206795 - AluY SINE Alu -4 307 1 220 281 37 24 chr4 52082057 52082139 -132206523 - L2 LINE L2 -467 2847 2765 259 256 171 17 chr4 52082458 52082575 -132206087 + L2 LINE L2 3179 3313 0 1654 173 43 15 chr4 52082590 52082914 -132205748 + L1ME1 LINE L1 5277 5609 -557 1757 124 0 0 chr4 52082914 52083179 -132205483 + L1PA13 LINE L1 5897 6161 -2 2314 211 22 51 chr4 52083516 52083594 -132205068 + L1ME1 LINE L1 5592 5671 -495 225 0 0 0 chr4 52083594 52083619 -132205043 + (CA)n Simple_repeat Simple_repeat 2 26 0 2314 211 22 51 chr4 52083619 52084127 -132204535 + L1ME1 LINE L1 5671 6161 -5 242 329 51 0 chr4 52085381 52085460 -132203202 + MIR SINE MIR 75 157 -105 21 57 0 0 chr4 52086364 52086399 -132202263 + AT_rich Low_complexity Low_complexity 1 35 0 350 289 85 78 chr4 52086674 52086773 -132201889 - L1ME3A LINE L1 -208 5962 5865 7424 30 0 0 chr4 52086773 52087840 -132200822 - L1PA4 LINE L1 -1 6154 5086 350 289 85 78 chr4 52087840 52087875 -132200787 - L1ME3A LINE L1 -305 5865 5832 2118 120 0 0 chr4 52087875 52088202 -132200460 + AluSx SINE Alu 1 327 0 350 289 85 78 chr4 52088202 52088304 -132200358 - L1ME3A LINE L1 -338 5832 5719 304 77 39 0 chr4 52088304 52088356 -132200306 + (TG)n Simple_repeat Simple_repeat 1 54 0 350 289 85 78 chr4 52088356 52088410 -132200252 - L1ME3A LINE L1 -451 5719 5667 249 205 133 0 chr4 52088630 52088713 -132199949 + MLT1L LTR MaLR 505 598 -17 722 294 53 42 chr4 52088849 52089474 -132199188 - L1M4 LINE L1 -1722 4424 3793 192 231 0 0 chr4 52089475 52089527 -132199135 + (CA)n Simple_repeat Simple_repeat 1 52 0 330 292 56 41 chr4 52089531 52089596 -132199066 - L1M4 LINE L1 -2380 3766 3703 2016 141 10 3 chr4 52089596 52089894 -132198768 - AluSx SINE Alu -12 300 1 330 292 56 41 chr4 52089894 52090023 -132198639 - L1M4 LINE L1 -2443 3703 3569 24 0 0 0 chr4 52090076 52090100 -132198562 + AT_rich Low_complexity Low_complexity 1 24 0 628 199 14 76 chr4 52090226 52090296 -132198366 - L1MC4 LINE L1 -1392 6650 6577 1854 164 3 26 chr4 52090296 52090601 -132198061 - AluJb SINE Alu -14 298 1 628 199 14 76 chr4 52090601 52090741 -132197921 - L1MC4 LINE L1 -1465 6577 6444 769 188 94 0 chr4 52091895 52092033 -132196629 + FAM SINE Alu 2 152 -33 365 165 114 0 chr4 52093099 52093178 -132195484 + MIR SINE MIR 116 203 -59 308 264 85 0 chr4 52093233 52093339 -132195323 + MIR SINE MIR 148 262 0 1628 131 94 36 chr4 52093610 52093907 -132194755 + AluJb SINE Alu 1 312 0 830 93 0 0 chr4 52094071 52094178 -132194484 + U6 snRNA snRNA 1 107 0 966 152 49 0 chr4 52095204 52095388 -132193274 + L1PB1 LINE L1 3 195 -6668 13860 148 50 9 chr4 52095391 52098417 -132190245 + L1PB1 LINE L1 634 3534 -3333 192 97 0 0 chr4 52098417 52098448 -132190214 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 13860 148 50 9 chr4 52098448 52101042 -132187620 + L1PB1 LINE L1 3534 6519 -348 417 86 0 0 chr4 52101042 52101100 -132187562 + (TA)n Simple_repeat Simple_repeat 1 58 0 13860 148 50 9 chr4 52101100 52101463 -132187199 + L1PB1 LINE L1 6519 6866 -1 536 132 33 0 chr4 52102535 52102626 -132186036 - L1PA13 LINE L1 -19 6144 6051 430 131 42 6 chr4 52102626 52102696 -132185966 - MSTA LTR MaLR -8 418 347 5685 68 55 17 chr4 52102730 52103563 -132185099 + SVA Other Other 2 866 -520 6416 135 21 5 chr4 52103676 52104697 -132183965 - L1PA12 LINE L1 -5300 2281 1245 4375 188 30 32 chr4 52104800 52105805 -132182857 + L1MA10 LINE L1 5329 6331 -3 389 254 12 0 chr4 52105803 52105972 -132182690 + L1M4 LINE L1 3073 3243 -2903 * 2011 130 34 0 chr4 52106199 52106492 -132182170 - AluSx SINE Alu -9 303 1 28 29 0 0 chr4 52106576 52106611 -132182051 + AT_rich Low_complexity Low_complexity 1 35 0 334 275 75 51 chr4 52106694 52107065 -132181597 + L1MEc LINE L1 1375 1754 -4642 244 271 0 0 chr4 52107078 52107137 -132181525 + (CA)n Simple_repeat Simple_repeat 2 60 0 7667 173 47 2 chr4 52107375 52108981 -132179681 + L1P LINE L1 3111 4789 -1357 21722 75 7 1 chr4 52109086 52112146 -132176516 - L1P LINE L1 -2513 3633 557 36 0 0 0 chr4 52112259 52112295 -132176367 + AT_rich Low_complexity Low_complexity 1 36 0 246 269 128 0 chr4 52112410 52112488 -132176174 + MIR3 SINE MIR 111 198 -10 23 68 0 0 chr4 52112758 52112802 -132175860 + AT_rich Low_complexity Low_complexity 1 44 0 261 283 20 30 chr4 52114560 52114659 -132174003 - MIR SINE MIR -75 187 90 360 229 64 18 chr4 52117130 52117239 -132171423 - L1ME4a LINE L1 -49 6072 5959 314 257 29 0 chr4 52117528 52117598 -132171064 + L2 LINE L2 3201 3272 0 972 178 0 61 chr4 52117606 52117820 -132170842 + MLT1B LTR MaLR 2 202 -188 709 193 28 7 chr4 52117814 52117959 -132170703 + MLT2D LTR ERVL 219 366 -48 * 441 364 63 22 chr4 52118141 52118410 -132170252 - HAL1 LINE L1 -1593 914 635 824 281 115 16 chr4 52118979 52119345 -132169317 - LTR33 LTR ERVL -20 501 100 2015 275 93 20 chr4 52119553 52120740 -132167922 - L1M4 LINE L1 -1131 5015 3743 2285 183 54 32 chr4 52121094 52121562 -132167100 + MLT2B1 LTR ERVL 1 482 -38 186 71 0 0 chr4 52121562 52121590 -132167072 + (TAGA)n Simple_repeat Simple_repeat 2 29 0 2285 183 54 32 chr4 52121590 52121625 -132167037 + MLT2B1 LTR ERVL 482 515 -5 2852 222 60 9 chr4 52121626 52122297 -132166365 + ERVL-B1 LTR ERVL 2 706 -5058 1368 39 6 0 chr4 52122408 52122586 -132166076 + THE1B-int LTR MaLR 1396 1574 -6 2221 123 73 15 chr4 52122591 52122933 -132165729 + THE1B LTR MaLR 1 362 -2 251 254 79 18 chr4 52123475 52123589 -132165073 - L1ME4a LINE L1 -12 6109 5989 1754 191 28 18 chr4 52123595 52123982 -132164680 + L1M1 LINE L1 14 404 -7161 698 351 24 26 chr4 52124559 52125017 -132163645 + L1PA13 LINE L1 788 1244 -6330 393 276 0 0 chr4 52125280 52125378 -132163284 + L1PA13 LINE L1 2085 2182 -5399 12367 48 59 1 chr4 52125617 52127313 -132161349 - L1P LINE L1 -3573 2573 779 29 0 0 0 chr4 52129746 52129775 -132158887 + AT_rich Low_complexity Low_complexity 1 29 0 437 354 122 23 chr4 52129884 52130407 -132158255 + L2 LINE L2 1841 2415 -899 3390 179 61 18 chr4 52130444 52131215 -132157447 + L1MB7 LINE L1 5379 6182 -2 566 294 86 56 chr4 52131350 52131764 -132156898 - L1ME4a LINE L1 -216 5946 5513 2129 109 34 0 chr4 52131764 52132057 -132156605 - AluSx SINE Alu -9 303 1 566 294 86 56 chr4 52132057 52132145 -132156517 - L1ME4a LINE L1 -649 5513 5429 227 309 61 35 chr4 52132316 52132546 -132156116 - L1ME4a LINE L1 -866 5280 5045 361 243 100 29 chr4 52132579 52132789 -132155873 - L1ME4a LINE L1 -1163 4983 4759 303 258 45 0 chr4 52132903 52132992 -132155670 - L1ME4a LINE L1 -1785 4361 4269 376 229 64 8 chr4 52132998 52133168 -132155494 - L1M LINE L1 -743 5403 5228 5422 261 17 20 chr4 52133295 52135104 -132153558 + L1PA12 LINE L1 2803 4605 -2979 781 191 0 0 chr4 52135104 52135235 -132153427 + FLAM_C SINE Alu 1 131 -2 5422 261 17 20 chr4 52135235 52135487 -132153175 + L1PA12 LINE L1 4605 4856 -2728 2190 112 0 3 chr4 52136047 52136350 -132152312 + AluSc SINE Alu 1 302 -7 1135 96 0 0 chr4 52137429 52137586 -132151076 - AluY SINE Alu 0 311 155 1013 98 33 0 chr4 52138171 52138324 -132150338 - MER4B LTR ERV1 -452 158 1 787 173 14 132 chr4 52138324 52138543 -132150119 + MLT1C LTR MaLR 198 467 0 297 301 18 35 chr4 52138547 52138660 -132150002 - MLT1I LTR MaLR -185 224 114 948 196 0 0 chr4 52138864 52139027 -132149635 - AluJo SINE Alu 0 302 140 296 58 0 115 chr4 52139027 52139079 -132149583 + AluJo SINE Alu 96 141 -161 955 122 0 8 chr4 52139082 52139213 -132149449 - AluJo SINE Alu -164 148 19 770 311 55 37 chr4 52139217 52139764 -132148898 - L1MC/D LINE L1 -1988 5820 5264 504 67 67 0 chr4 52140083 52140158 -132148504 + MADE1 DNA Mariner 1 80 0 372 256 126 41 chr4 52140364 52140728 -132147934 - L1MC/D LINE L1 -1572 4574 4180 2463 46 0 7 chr4 52141031 52141333 -132147329 - AluY SINE Alu -3 308 9 330 322 91 17 chr4 52141412 52141642 -132147020 - L1MC/D LINE L1 -3211 2935 2689 372 319 255 16 chr4 52141701 52141889 -132146773 + MIR SINE MIR 2 234 -28 23 54 0 0 chr4 52141940 52141977 -132146685 + AT_rich Low_complexity Low_complexity 1 37 0 272 143 39 32 chr4 52141977 52142131 -132146531 + (TATAA)n Simple_repeat Simple_repeat 2 156 0 266 111 71 30 chr4 52142131 52142230 -132146432 + (TA)n Simple_repeat Simple_repeat 2 104 0 29 47 0 0 chr4 52142400 52142443 -132146219 + AT_rich Low_complexity Low_complexity 1 43 0 731 128 0 0 chr4 52142479 52142596 -132146066 - L1PA15 LINE L1 -4 6161 6045 971 169 6 0 chr4 52142597 52142780 -132145882 - L1P LINE L1 -1246 4900 4717 * 11759 166 20 6 chr4 52142770 52145261 -132143401 - L1PA15 LINE L1 -136 6029 3493 243 22 44 22 chr4 52145261 52145306 -132143356 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 11759 166 20 6 chr4 52145306 52145743 -132142919 - L1PA15 LINE L1 -2672 3493 3063 2865 179 55 35 chr4 52145773 52146461 -132142201 + L1MA9 LINE L1 5578 6279 -33 741 216 45 25 chr4 52146509 52146730 -132141932 + MLT1G1 LTR MaLR 1 224 -325 2273 132 72 8 chr4 52147916 52148317 -132140345 + MSTA LTR MaLR 2 428 0 213 175 11 0 chr4 52148722 52148772 -132139890 - MIR SINE MIR -64 144 92 445 298 26 33 chr4 52149145 52149540 -132139122 + LTR16B LTR ERVL 1 453 -11 219 69 0 0 chr4 52150645 52150674 -132137988 + (TCCC)n Simple_repeat Simple_repeat 4 32 0 180 0 0 0 chr4 52152664 52152684 -132135978 + (A)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr4 52153505 52153526 -132135136 + AT_rich Low_complexity Low_complexity 1 21 0 423 270 179 19 chr4 52154654 52154867 -132133795 + MIR SINE MIR 4 250 -12 885 98 23 0 chr4 52156203 52156336 -132132326 + HSMAR2 DNA Mariner 2 137 -1165 * 5987 119 25 57 chr4 52156293 52157398 -132131264 + Tigger1 DNA MER2_type 199 1268 -1150 227 193 342 0 chr4 52157408 52157522 -132131140 + Charlie2 DNA MER1_type 2162 2314 -548 1765 156 73 0 chr4 52157523 52157825 -132130837 - MER7A DNA MER2_type 0 346 25 564 243 92 50 chr4 52157830 52158147 -132130515 + Charlie2 DNA MER1_type 2354 2683 -179 739 192 0 8 chr4 52158147 52158277 -132130385 + AluJo SINE Alu 87 215 -97 722 117 0 0 chr4 52158303 52158406 -132130256 - Tigger1 DNA MER2_type -1326 1092 990 390 135 27 54 chr4 52158400 52158474 -132130188 + AluJo SINE Alu 217 288 -14 * 463 234 94 23 chr4 52158489 52158660 -132130002 + Charlie2 DNA MER1_type 2680 2862 0 258 183 0 0 chr4 52158888 52158959 -132129703 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 230 224 28 126 chr4 52159242 52159343 -132129319 + HAL1 LINE L1 1471 1556 -951 1995 138 10 0 chr4 52159343 52159641 -132129021 + AluSx SINE Alu 1 301 -11 230 224 28 126 chr4 52159641 52159682 -132128980 + HAL1 LINE L1 1556 1599 -908 2075 119 7 0 chr4 52159780 52160073 -132128589 + AluSg SINE Alu 2 296 -14 376 320 57 26 chr4 52160576 52160688 -132127974 + L1 LINE L1 2210 2317 -3829 2045 111 3 33 chr4 52160688 52160995 -132127667 + AluSx SINE Alu 1 298 -14 376 320 57 26 chr4 52160995 52161269 -132127393 + L1 LINE L1 2317 2608 -3538 730 175 98 14 chr4 52161272 52161415 -132127247 - FRAM SINE Alu -16 160 6 1392 277 143 53 chr4 52161479 52163254 -132125408 + L1 LINE L1 2665 4598 -1548 737 265 137 9 chr4 52163254 52163473 -132125189 + MIR SINE MIR 6 252 -10 303 319 68 43 chr4 52163567 52163774 -132124888 + L1 LINE L1 4736 4947 -1199 1916 147 43 0 chr4 52163960 52164306 -132124356 + MER46B DNA MER2_type 1 236 0 242 203 17 0 chr4 52164364 52164423 -132124239 + HAL1 LINE L1 2108 2167 -340 261 0 0 0 chr4 52164990 52165019 -132123643 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr4 52165131 52165152 -132123510 + AT_rich Low_complexity Low_complexity 1 21 0 344 311 148 0 chr4 52165374 52165496 -132123166 - MIR SINE MIR -121 141 2 2788 169 21 28 chr4 52166042 52166611 -132122051 + MER34B LTR ERV1 1 565 0 1610 160 90 0 chr4 52167087 52167355 -132121307 + AluJb SINE Alu 1 292 -20 255 320 163 0 chr4 52168526 52168673 -132119989 - MIR SINE MIR 0 262 92 188 143 0 0 chr4 52168794 52168822 -132119840 - L3 LINE CR1 -271 1306 1279 260 361 69 8 chr4 52169496 52169626 -132119036 + MIR3 SINE MIR 4 141 -67 294 308 165 41 chr4 52170095 52170361 -132118301 - L3b LINE CR1 -181 1402 1104 243 0 0 0 chr4 52170784 52170811 -132117851 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2141 108 0 0 chr4 52173934 52174259 -132114403 + AluY SINE Alu 1 325 0 878 194 41 12 chr4 52174265 52174435 -132114227 - MER5A DNA MER1_type -14 175 1 1948 133 19 13 chr4 52174605 52174914 -132113748 - AluJb SINE Alu -1 311 1 978 132 0 0 chr4 52174915 52175051 -132113611 - AluJb SINE Alu -176 136 1 973 250 111 34 chr4 52175310 52175810 -132112852 + MLT1E LTR MaLR 4 593 0 24 32 0 0 chr4 52176706 52176737 -132111925 + AT_rich Low_complexity Low_complexity 1 31 0 1928 167 88 56 chr4 52177098 52177191 -132111471 + Charlie1b DNA MER1_type 6 95 -2666 2134 115 14 0 chr4 52177191 52177487 -132111175 + AluSp SINE Alu 1 300 -13 1928 167 88 56 chr4 52177487 52177895 -132110767 + Charlie1b DNA MER1_type 95 523 0 1267 198 80 10 chr4 52178547 52178835 -132109827 + L1MB4 LINE L1 5873 6180 0 661 289 123 9 chr4 52179151 52179379 -132109283 + MIR SINE MIR 8 261 -1 2242 130 0 6 chr4 52179530 52179845 -132108817 - AluSq SINE Alu 0 313 1 186 304 29 29 chr4 52179881 52179950 -132108712 - L3 LINE CR1 -1394 183 115 447 186 106 44 chr4 52180205 52180318 -132108344 + MER94 DNA DNA 15 134 0 216 0 0 0 chr4 52180326 52180350 -132108312 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 21 57 0 0 chr4 52180460 52180495 -132108167 + AT_rich Low_complexity Low_complexity 1 35 0 1925 119 41 0 chr4 52181322 52181617 -132107045 + AluJb SINE Alu 1 307 -5 2337 114 94 29 chr4 52181832 52182278 -132106384 + L1MA7 LINE L1 5817 6291 0 201 239 0 0 chr4 52183813 52183859 -132104803 + GA-rich Low_complexity Low_complexity 1 46 0 207 340 85 11 chr4 52184580 52184674 -132103988 + MER5A DNA MER1_type 83 183 -6 1302 177 52 55 chr4 52185402 52185764 -132102898 + MER46B DNA MER2_type 1 236 0 21 0 0 0 chr4 52185966 52185987 -132102675 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 52186259 52186280 -132102382 + AT_rich Low_complexity Low_complexity 1 21 0 1640 194 0 4 chr4 52188956 52189235 -132099427 + AluJo SINE Alu 14 291 -21 213 39 0 0 chr4 52189235 52189261 -132099401 + (TA)n Simple_repeat Simple_repeat 2 27 0 515 248 60 30 chr4 52189371 52189504 -132099158 - MIR SINE MIR 0 262 126 453 212 35 0 chr4 52189550 52189663 -132098999 + MER112 DNA MER1_type 1 117 -143 25 31 0 0 chr4 52189688 52189720 -132098942 + AT_rich Low_complexity Low_complexity 1 32 0 334 157 43 14 chr4 52189756 52189826 -132098836 + MER112 DNA MER1_type 178 249 -11 612 178 219 14 chr4 52190854 52191000 -132097662 + MER5B DNA MER1_type 1 176 -2 22 56 0 0 chr4 52191068 52191104 -132097558 + AT_rich Low_complexity Low_complexity 1 36 0 308 77 0 0 chr4 52191171 52191210 -132097452 + AluJ/FLAM SINE Alu 63 101 -201 1554 100 13 35 chr4 52191504 52191733 -132096929 - AluSp SINE Alu -5 308 85 2480 34 40 7 chr4 52191734 52192032 -132096630 - AluY SINE Alu -3 308 1 786 83 0 0 chr4 52192032 52192128 -132096534 - AluSp SINE Alu -217 96 1 1751 155 14 20 chr4 52192215 52192512 -132096150 + AluJo SINE Alu 1 295 -17 1554 181 25 4 chr4 52193650 52193953 -132094709 - AluJo SINE Alu 0 309 1 513 0 0 0 chr4 52194138 52194195 -132094467 + (GA)n Simple_repeat Simple_repeat 1 57 0 234 0 0 0 chr4 52194194 52194220 -132094442 + (TG)n Simple_repeat Simple_repeat 2 27 0 * 2353 101 0 3 chr4 52194294 52194600 -132094062 - AluSq SINE Alu -8 305 1 267 277 106 0 chr4 52194687 52194781 -132093881 - L2 LINE L2 0 3313 3210 806 247 31 5 chr4 52195158 52195352 -132093310 + MIR SINE MIR 2 200 -62 761 211 82 67 chr4 52195506 52195622 -132093040 + MIR SINE MIR 24 146 -116 2183 103 7 13 chr4 52195622 52195924 -132092738 + AluSp SINE Alu 2 301 -12 761 211 82 67 chr4 52195924 52196015 -132092647 + MIR SINE MIR 146 234 -28 331 211 218 38 chr4 52196572 52196705 -132091957 + L1ME4a LINE L1 5955 6111 -10 226 290 0 14 chr4 52198520 52198589 -132090073 + MIR SINE MIR 43 110 -152 1988 253 115 24 chr4 52198760 52199428 -132089234 + HsTC2c DNA MER2_type 1 729 0 505 144 8 93 chr4 52201269 52201387 -132087275 - Charlie8 DNA MER1_type -2275 142 35 300 27 0 0 chr4 52201530 52201567 -132087095 + (TG)n Simple_repeat Simple_repeat 1 37 0 273 286 171 19 chr4 52202319 52202486 -132086176 - MIR SINE MIR -51 157 14 1564 233 239 24 chr4 52202491 52203339 -132085323 + L2 LINE L2 2261 3312 -1 2560 123 17 3 chr4 52203368 52203727 -132084935 - THE1B LTR MaLR 0 364 1 26 0 0 0 chr4 52203967 52203993 -132084669 + AT_rich Low_complexity Low_complexity 1 26 0 325 234 82 109 chr4 52204900 52205017 -132083645 + MIR SINE MIR 69 181 -81 1411 199 44 11 chr4 52205017 52205289 -132083373 + AluJo SINE Alu 1 281 -31 325 234 82 109 chr4 52205289 52205355 -132083307 + MIR SINE MIR 181 247 -15 393 276 125 86 chr4 52205387 52205619 -132083043 - L2 LINE L2 -44 3228 2988 215 263 111 0 chr4 52205721 52205820 -132082842 - MIR SINE MIR -71 137 28 253 294 50 50 chr4 52206037 52206156 -132082506 + L2 LINE L2 3160 3278 -35 846 244 33 5 chr4 52207558 52207771 -132080891 - MIR SINE MIR 0 262 44 21 0 0 0 chr4 52208486 52208507 -132080155 + AT_rich Low_complexity Low_complexity 1 21 0 361 237 21 21 chr4 52208559 52208652 -132080010 - MIR SINE MIR -111 151 59 216 158 0 0 chr4 52208708 52208746 -132079916 + (CA)n Simple_repeat Simple_repeat 2 39 0 594 269 66 22 chr4 52208748 52208900 -132079762 - MIR SINE MIR -25 237 74 503 219 26 26 chr4 52208900 52209014 -132079648 + MER81 DNA DNA 1 114 0 594 269 66 22 chr4 52209014 52209043 -132079619 - MIR SINE MIR -188 74 48 2127 128 7 0 chr4 52209726 52210023 -132078639 + AluSx SINE Alu 1 299 -13 21 0 0 0 chr4 52210784 52210805 -132077857 + AT_rich Low_complexity Low_complexity 1 21 0 1365 171 47 19 chr4 52210879 52211136 -132077526 - AluJo SINE Alu -44 268 5 180 257 14 114 chr4 52211384 52211454 -132077208 - L2 LINE L2 0 3272 3210 274 105 0 0 chr4 52211810 52211848 -132076814 + Alu SINE Alu 250 287 -15 212 0 0 35 chr4 52211852 52211881 -132076781 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 346 242 32 11 chr4 52211883 52211978 -132076684 - L1ME4a LINE L1 -89 6032 5936 399 261 87 26 chr4 52212033 52212148 -132076514 + MER5B DNA MER1_type 1 122 -56 1927 157 0 29 chr4 52212321 52212633 -132076029 - AluSx SINE Alu -9 303 1 23 0 0 0 chr4 52213201 52213224 -132075438 + AT_rich Low_complexity Low_complexity 1 23 0 252 288 27 0 chr4 52213485 52213558 -132075104 - MIR SINE MIR -111 151 77 386 323 55 49 chr4 52213763 52213927 -132074735 + MER91A DNA MER1_type 15 179 -17 1592 157 23 4 chr4 52214249 52214510 -132074152 + AluSx SINE Alu 1 266 -46 278 53 0 0 chr4 52214683 52214721 -132073941 + MADE1 DNA Mariner 42 79 -1 189 0 0 0 chr4 52216098 52216119 -132072543 + (A)n Simple_repeat Simple_repeat 1 21 0 205 87 65 65 chr4 52217002 52217048 -132071614 - L2 LINE L2 -1 3312 3267 672 162 38 0 chr4 52217281 52217386 -132071276 + Tigger7 DNA MER2_type 4 112 -621 1831 150 68 31 chr4 52217388 52217741 -132070921 + Tigger7 DNA MER2_type 2222 2587 0 349 236 104 19 chr4 52217846 52217952 -132070710 + MLT1K LTR MaLR 134 248 -340 366 61 0 0 chr4 52218149 52218198 -132070464 + (CA)n Simple_repeat Simple_repeat 2 50 0 466 211 213 70 chr4 52219416 52219829 -132068833 + L1ME4a LINE L1 5356 5827 -294 249 287 92 0 chr4 52219833 52219920 -132068742 + L1MC5 LINE L1 7729 7823 -138 1393 154 4 13 chr4 52219928 52220161 -132068501 + AluJb SINE Alu 1 231 -81 420 364 8 0 chr4 52220367 52220499 -132068163 + MIR3 SINE MIR 68 200 -8 1745 115 4 0 chr4 52221240 52221475 -132067187 + AluSx SINE Alu 1 236 -76 261 57 0 0 chr4 52221487 52221522 -132067140 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 207 289 19 0 chr4 52222316 52222368 -132066294 - MER5A DNA MER1_type -25 164 112 1154 160 28 38 chr4 52222393 52222453 -132066209 + MER20 DNA MER1_type 1 60 -159 1958 150 0 3 chr4 52222453 52222746 -132065916 - AluSx SINE Alu -20 292 1 1154 160 28 38 chr4 52222746 52222897 -132065765 + MER20 DNA MER1_type 60 210 -9 231 284 23 34 chr4 52222898 52222986 -132065676 - MER5B DNA MER1_type -91 87 1 1579 183 10 21 chr4 52223407 52223696 -132064966 + AluJo SINE Alu 5 290 -22 205 281 62 16 chr4 52224947 52225011 -132063651 - MIR SINE MIR -55 153 86 267 31 0 0 chr4 52227148 52227180 -132061482 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 992 151 6 6 chr4 52228424 52228590 -132060072 - AluJb SINE Alu -25 287 122 1702 160 7 4 chr4 52229155 52229424 -132059238 + AluJb SINE Alu 11 280 -32 1677 89 9 5 chr4 52229530 52229754 -132058908 + AluSq SINE Alu 87 311 -2 2177 124 3 0 chr4 52229900 52230207 -132058455 + AluSx SINE Alu 1 308 -4 762 201 15 8 chr4 52232067 52232201 -132056461 - AluJo SINE Alu -174 138 4 407 250 353 16 chr4 52232228 52232472 -132056190 + L2 LINE L2 2976 3301 -12 191 77 0 51 chr4 52232936 52232975 -132055687 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 1983 143 13 3 chr4 52233230 52233537 -132055125 - AluSx SINE Alu -2 310 1 395 257 170 18 chr4 52233796 52233967 -132054695 - MIR SINE MIR -29 233 37 205 287 188 32 chr4 52234483 52234607 -132054055 + MIR SINE MIR 33 176 -32 513 264 162 10 chr4 52234647 52234844 -132053818 - MIR SINE MIR -8 254 28 2163 135 3 0 chr4 52234847 52235151 -132053511 - AluSx SINE Alu -7 305 1 285 281 0 0 chr4 52235567 52235624 -132053038 - MIR SINE MIR -91 117 61 * 439 252 99 9 chr4 52235618 52235729 -132052933 + MIR3 SINE MIR 81 201 -7 372 249 77 30 chr4 52236142 52236311 -132052351 - MER104 DNA MER2_type 0 180 4 684 229 171 5 chr4 52236351 52236556 -132052106 - MIR SINE MIR -18 244 6 380 260 53 65 chr4 52236885 52237054 -132051608 + MER69A DNA AcHobo 3 169 -8 246 274 85 12 chr4 52237391 52237555 -132051107 + Charlie7 DNA MER1_type 2437 2612 0 4745 94 18 2 chr4 52237598 52238226 -132050436 + L1PA14 LINE L1 5522 6159 -2 312 208 31 0 chr4 52238505 52238635 -132050027 + L1MC5 LINE L1 7502 7684 -277 266 141 103 64 chr4 52238654 52238732 -132049930 + Charlie6 DNA MER1_type 1581 1661 -1839 336 217 70 47 chr4 52238733 52238862 -132049800 + L1MC5 LINE L1 7800 7931 -30 3813 144 55 11 chr4 52240274 52240935 -132047727 + MER50 LTR ERV1 1 690 -44 2397 104 0 0 chr4 52241591 52241890 -132046772 + AluSx SINE Alu 1 299 -13 327 272 25 63 chr4 52242377 52242535 -132046127 - MER5A DNA MER1_type -24 165 14 2371 152 27 90 chr4 52242918 52243398 -132045264 + LTR32 LTR ERVL 22 471 0 2402 98 0 0 chr4 52243616 52243912 -132044750 + AluSg SINE Alu 1 296 -14 227 150 0 0 chr4 52243913 52243953 -132044709 + Charlie8 DNA MER1_type 1378 1417 -1000 1251 229 74 43 chr4 52245060 52245504 -132043158 + MLT1C LTR MaLR 15 467 0 468 227 166 18 chr4 52246218 52246381 -132042281 + L1MC4 LINE L1 7797 7983 -59 214 226 60 36 chr4 52247820 52247904 -132040758 + MIR SINE MIR 79 164 -98 488 300 0 33 chr4 52248475 52248655 -132040007 + MIR SINE MIR 33 206 -56 1516 175 7 52 chr4 52248695 52249003 -132039659 - AluJo SINE Alu -16 296 3 612 299 121 57 chr4 52249458 52249929 -132038733 + MLT1J LTR MaLR 11 511 0 2222 127 0 0 chr4 52250270 52250570 -132038092 - AluSc SINE Alu -9 300 1 536 196 37 0 chr4 52250881 52250988 -132037674 + L1PA8A LINE L1 6018 6128 -3 1576 146 14 4 chr4 52251689 52251964 -132036698 + L1MA8 LINE L1 6011 6288 -3 1946 104 52 0 chr4 52251973 52252264 -132036398 + AluY SINE Alu 1 305 0 2418 91 0 0 chr4 52252579 52252877 -132035785 - AluSg SINE Alu -12 298 1 681 174 66 0 chr4 52253561 52253682 -132034980 + MLT1D LTR MaLR 1 129 -376 43718 33 22 4 chr4 52253682 52259742 -132028920 + L1PA3 LINE L1 8 6176 0 2389 81 0 0 chr4 52259789 52260087 -132028575 + AluY SINE Alu 1 298 -13 1822 125 77 4 chr4 52260089 52260361 -132028301 - AluSx SINE Alu -19 293 2 2072 178 17 37 chr4 52260362 52260707 -132027955 + MLT1D LTR MaLR 104 441 -64 1898 162 14 0 chr4 52260707 52261003 -132027659 - AluJo SINE Alu -11 301 2 2072 178 17 37 chr4 52261003 52261067 -132027595 + MLT1D LTR MaLR 441 505 0 231 61 0 0 chr4 52261824 52261857 -132026805 + (TG)n Simple_repeat Simple_repeat 1 33 0 1628 159 23 10 chr4 52262165 52262467 -132026195 + L1MB3 LINE L1 5877 6182 -1 614 213 198 0 chr4 52263692 52263889 -132024773 + MIR SINE MIR 12 247 -15 2284 114 0 0 chr4 52264024 52264323 -132024339 - AluSx SINE Alu -13 299 1 195 194 42 83 chr4 52265602 52265674 -132022988 - L2 LINE L2 -91 3222 3154 804 163 0 0 chr4 52266633 52266756 -132021906 - FLAM_C SINE Alu -10 123 1 293 218 0 81 chr4 52266966 52267053 -132021609 - MIR SINE MIR -8 254 175 1965 151 48 3 chr4 52267286 52267618 -132021044 - MER7A DNA MER2_type -1 345 1 201 132 0 53 chr4 52267728 52267766 -132020896 + (TTTTC)n Simple_repeat Simple_repeat 5 40 0 378 290 217 34 chr4 52269149 52269559 -132019103 - L3 LINE CR1 -143 1434 950 2553 121 3 6 chr4 52270482 52270847 -132017815 - THE1B LTR MaLR 0 364 1 783 141 68 34 chr4 52270938 52271115 -132017547 - MER96B DNA MER1_type? -234 183 1 402 21 0 0 chr4 52272973 52273020 -132015642 + (CAA)n Simple_repeat Simple_repeat 2 48 0 394 335 30 25 chr4 52274073 52274270 -132014392 - L3 LINE CR1 -438 1139 942 1228 232 62 53 chr4 52274474 52274923 -132013739 + MLT1C LTR MaLR 6 458 -9 320 295 54 8 chr4 52275865 52275994 -132012668 - MIR SINE MIR 0 262 128 183 129 0 0 chr4 52276028 52276059 -132012603 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 531 270 25 6 chr4 52276096 52276259 -132012403 - L3 LINE CR1 -119 1458 1293 394 280 135 20 chr4 52277124 52277324 -132011338 - MIR SINE MIR 0 262 40 434 231 237 32 chr4 52277367 52277553 -132011109 - MIR SINE MIR -32 230 7 409 235 59 44 chr4 52278575 52278711 -132009951 - MIR SINE MIR -36 226 89 339 279 202 22 chr4 52282786 52282969 -132005693 - MIR SINE MIR -1 261 46 267 79 0 0 chr4 52283180 52283218 -132005444 + (TA)n Simple_repeat Simple_repeat 2 39 0 1942 146 3 7 chr4 52283738 52284040 -132004622 - AluJb SINE Alu 0 312 12 217 321 80 22 chr4 52285770 52285907 -132002755 + L2 LINE L2 677 821 -2493 312 307 10 0 chr4 52287046 52287147 -132001515 - MIR SINE MIR -126 136 35 302 302 78 62 chr4 52287152 52287275 -132001387 + L2 LINE L2 3006 3126 -146 1987 148 3 3 chr4 52287275 52287572 -132001090 - AluJb SINE Alu -15 297 1 302 302 78 62 chr4 52287572 52287706 -132000956 + L2 LINE L2 3126 3267 -5 4360 78 4 0 chr4 52288142 52288690 -131999972 + MER41A LTR ERV1 5 554 0 637 90 0 30 chr4 52289756 52289856 -131998806 - AluSg/x SINE Alu -1 309 213 513 0 0 0 chr4 52290096 52290153 -131998509 + (GA)n Simple_repeat Simple_repeat 1 57 0 234 0 0 0 chr4 52290152 52290178 -131998484 + (TG)n Simple_repeat Simple_repeat 2 27 0 * 2469 73 0 9 chr4 52290242 52290558 -131998104 - AluSp SINE Alu 0 313 1 2013 136 7 0 chr4 52290940 52291234 -131997428 - AluSx SINE Alu -16 296 1 268 248 44 80 chr4 52291291 52291404 -131997258 + MIR SINE MIR 32 140 -68 398 375 12 0 chr4 52291413 52291573 -131997089 - MIR3 SINE MIR -1 207 46 23 33 0 0 chr4 52292283 52292313 -131996349 + AT_rich Low_complexity Low_complexity 1 30 0 185 62 0 31 chr4 52292367 52292399 -131996263 + (CAAAAA)n Simple_repeat Simple_repeat 5 35 0 3987 230 81 55 chr4 52293931 52295871 -131992791 + L1MC4 LINE L1 5948 8041 -1 478 271 58 13 chr4 52295900 52296055 -131992607 + L1ME3A LINE L1 6006 6167 -3 22 0 0 0 chr4 52296090 52296112 -131992550 + AT_rich Low_complexity Low_complexity 1 22 0 403 317 83 26 chr4 52296650 52296915 -131991747 + L2 LINE L2 962 1241 -2073 850 156 88 0 chr4 52296977 52297134 -131991528 - MER44D DNA MER2_type -16 689 519 4402 98 41 12 chr4 52297134 52297774 -131990888 + HSMAR1 DNA Mariner 1 658 -629 43330 40 6 2 chr4 52297775 52303902 -131984760 + L1PA3 LINE L1 3 6154 -1 4664 101 9 0 chr4 52303902 52304539 -131984123 + HSMAR1 DNA Mariner 645 1287 0 411 197 265 0 chr4 52304540 52304657 -131984005 - MER44D DNA MER2_type -191 418 1 462 191 78 0 chr4 52304664 52304779 -131983883 + L2 LINE L2 1614 1737 -1577 4583 243 53 54 chr4 52304779 52305210 -131983452 + L2 LINE L2 1254 1684 -1630 1851 164 0 0 chr4 52305210 52305497 -131983165 - AluSx SINE Alu -25 287 1 4583 243 53 54 chr4 52305497 52306634 -131982028 + L2 LINE L2 1684 2820 -494 861 243 44 8 chr4 52306713 52306964 -131981698 - MIR SINE MIR -1 261 2 185 269 39 77 chr4 52308679 52308773 -131979889 + L2 LINE L2 2384 2475 -839 1856 135 4 7 chr4 52308773 52309047 -131979615 - AluSx SINE Alu -39 273 1 470 242 135 17 chr4 52309944 52310122 -131978540 + L2 LINE L2 2251 2449 -865 2207 95 0 14 chr4 52311213 52311509 -131977153 + AluSg SINE Alu 1 292 -18 2167 127 0 0 chr4 52311698 52311997 -131976665 + AluSq SINE Alu 1 299 -14 219 69 0 0 chr4 52312153 52312182 -131976480 + (CA)n Simple_repeat Simple_repeat 2 30 0 284 311 40 0 chr4 52312194 52312268 -131976394 + L2 LINE L2 3234 3310 -3 31 0 0 0 chr4 52313094 52313125 -131975537 + AT_rich Low_complexity Low_complexity 1 31 0 505 256 45 0 chr4 52313229 52313385 -131975277 + HAL1 LINE L1 140 302 -2205 * 995 246 129 56 chr4 52313377 52314004 -131974658 + HAL1 LINE L1 600 1272 -1235 21 0 0 0 chr4 52314128 52314149 -131974513 + GC_rich Low_complexity Low_complexity 1 21 0 180 97 0 0 chr4 52314355 52314386 -131974276 + (G)n Simple_repeat Simple_repeat 1 31 0 22 35 0 0 chr4 52317407 52317436 -131971226 + AT_rich Low_complexity Low_complexity 1 29 0 1676 185 0 20 chr4 52317904 52318202 -131970460 + AluSx SINE Alu 1 292 -20 818 152 0 16 chr4 52318483 52318608 -131970054 - FLAM_C SINE Alu -20 123 1 483 266 46 12 chr4 52318973 52319146 -131969516 + L1ME3 LINE L1 5933 6111 -51 2131 73 24 7 chr4 52319509 52319798 -131968864 + AluY SINE Alu 1 294 -17 290 316 34 26 chr4 52320172 52320289 -131968373 - L2 LINE L2 -4 3309 3192 634 239 8 0 chr4 52320830 52320960 -131967702 - FLAM_A SINE Alu -2 131 1 1434 84 0 30 chr4 52321157 52321359 -131967303 + MER107 DNA MER1_type 2 197 0 267 262 35 28 chr4 52322350 52322491 -131966171 + L1MC4 LINE L1 7900 8041 -1 186 296 0 19 chr4 52322541 52322595 -131966067 - L2 LINE L2 -1 3271 3219 2149 136 0 0 chr4 52323714 52324016 -131964646 - AluSx SINE Alu -10 302 1 219 245 0 0 chr4 52324306 52324355 -131964307 + (CAT)n Simple_repeat Simple_repeat 1 49 0 2237 114 0 3 chr4 52324456 52324764 -131963898 - AluSx SINE Alu -5 307 1 5037 117 75 15 chr4 52325419 52326273 -131962389 - L1PA10 LINE L1 -1 6167 5263 248 196 0 0 chr4 52327277 52327328 -131961334 + MLT1G1 LTR MaLR 533 583 -12 678 269 196 31 chr4 52327350 52327773 -131960889 + MLT1H LTR MaLR 57 549 0 22 56 0 0 chr4 52327803 52327839 -131960823 + AT_rich Low_complexity Low_complexity 1 36 0 2598 96 37 5 chr4 52327839 52328244 -131960418 - L1MA2 LINE L1 -4 6300 5883 186 209 0 0 chr4 52328719 52328762 -131959900 + (TAG)n Simple_repeat Simple_repeat 3 45 0 256 258 264 13 chr4 52328763 52328918 -131959744 - MIR SINE MIR -6 256 63 21 0 0 0 chr4 52329277 52329298 -131959364 + AT_rich Low_complexity Low_complexity 1 21 0 374 241 90 8 chr4 52330008 52330141 -131958521 + L1ME4a LINE L1 5974 6117 -4 864 201 56 85 chr4 52330734 52330998 -131957664 - MER33 DNA MER1_type -2261 324 71 860 131 8 0 chr4 52330998 52331128 -131957534 - FLAM_C SINE Alu -2 131 1 864 201 56 85 chr4 52331128 52331205 -131957457 - MER33 DNA MER1_type -2514 71 1 3238 177 14 46 chr4 52331256 52331995 -131956667 - L1MB7 LINE L1 -19 6165 5451 317 82 20 0 chr4 52332244 52332293 -131956369 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 805 213 0 0 chr4 52332375 52332525 -131956137 + MER5A DNA MER1_type 39 188 -1 595 259 0 4 chr4 52332656 52332804 -131955858 + L1PB4 LINE L1 6024 6166 0 309 303 232 0 chr4 52333149 52333291 -131955371 + MER5A DNA MER1_type 9 183 -6 330 304 123 41 chr4 52333357 52333577 -131955085 + L2 LINE L2 3030 3267 -5 234 323 89 51 chr4 52333860 52334018 -131954644 + MIR3 SINE MIR 17 180 -28 1792 125 3 94 chr4 52335281 52335609 -131953053 - AluSx SINE Alu -12 300 3 749 259 16 21 chr4 52335793 52335986 -131952676 - MIR SINE MIR -50 212 21 2168 130 33 33 chr4 52336292 52336654 -131952008 + THE1B LTR MaLR 3 364 0 2061 181 26 0 chr4 52337131 52337592 -131951070 + L1MB7 LINE L1 4968 5440 -738 1692 172 3 37 chr4 52337592 52337888 -131950774 + AluJb SINE Alu 1 286 -26 2716 171 28 35 chr4 52337892 52337922 -131950740 + L1MB7 LINE L1 5609 5638 -546 342 0 0 0 chr4 52337922 52337960 -131950702 + (TG)n Simple_repeat Simple_repeat 2 39 0 2716 171 28 35 chr4 52337960 52338509 -131950153 + L1MB7 LINE L1 5638 6184 0 221 288 41 14 chr4 52338548 52338621 -131950041 - L2 LINE L2 0 3313 3239 21 0 0 0 chr4 52339689 52339710 -131948952 + AT_rich Low_complexity Low_complexity 1 21 0 5333 152 29 3 chr4 52340259 52341210 -131947452 + L1PB3 LINE L1 5178 6150 -4 3199 217 18 0 chr4 52342321 52342933 -131945729 - MER82 DNA MER2_type 0 653 31 575 244 36 48 chr4 52343652 52343820 -131944842 + MER5B DNA MER1_type 1 166 -12 261 306 190 16 chr4 52343839 52343960 -131944702 + MER5B DNA MER1_type 1 142 -36 890 210 140 52 chr4 52344389 52344718 -131943944 + LTR16A1 LTR ERVL 1 358 -99 296 242 81 20 chr4 52344964 52345063 -131943599 + LTR16A1 LTR ERVL 353 457 0 324 321 80 62 chr4 52345104 52345328 -131943334 + MIR SINE MIR 20 247 -15 239 306 22 37 chr4 52345820 52345954 -131942708 + MIR3 SINE MIR 3 134 -74 2127 104 17 3 chr4 52346329 52346618 -131942044 - AluSx SINE Alu -17 295 3 226 266 70 55 chr4 52346745 52346873 -131941789 + MLT1K LTR MaLR 142 271 -317 1624 154 38 63 chr4 52346887 52347206 -131941456 - AluJo SINE Alu -1 311 1 24 32 0 0 chr4 52347604 52347635 -131941027 + AT_rich Low_complexity Low_complexity 1 31 0 300 336 63 7 chr4 52348005 52348148 -131940514 + MIR3 SINE MIR 2 152 -56 219 69 0 0 chr4 52348257 52348286 -131940376 + (T)n Simple_repeat Simple_repeat 1 29 0 246 263 135 30 chr4 52348567 52348700 -131939962 + MIR SINE MIR 82 228 -34 201 176 40 149 chr4 52349634 52349680 -131938982 - MIR SINE MIR -75 187 150 609 231 5 59 chr4 52349680 52349866 -131938796 - MER104 DNA MER2_type -4 176 1 201 176 40 149 chr4 52349866 52349893 -131938769 - MIR SINE MIR -112 150 122 2278 216 37 4 chr4 52350421 52350875 -131937787 - MER82 DNA MER2_type -2 651 183 4364 109 16 2 chr4 52350875 52351499 -131937163 + L1PA16 LINE L1 5455 6087 -79 557 186 0 0 chr4 52351581 52351678 -131936984 - MER82 DNA MER2_type -459 194 98 2005 141 3 19 chr4 52351826 52352138 -131936524 + AluSx SINE Alu 1 307 -5 345 224 13 13 chr4 52353641 52353657 -131935005 - L1MA10 LINE L1 -45 6289 6274 1439 228 70 25 chr4 52353657 52354057 -131934605 - L1ME1 LINE L1 -51 6115 5698 1622 170 0 11 chr4 52354057 52354322 -131934340 + AluJo SINE Alu 43 304 -8 1085 228 33 0 chr4 52355014 52355225 -131933437 + MER20 DNA MER1_type 2 219 0 1978 152 7 0 chr4 52355228 52355525 -131933137 - AluJo SINE Alu -13 299 1 204 283 0 0 chr4 52355693 52355739 -131932923 + CT-rich Low_complexity Low_complexity 5 50 0 603 284 100 26 chr4 52355741 52355970 -131932692 + MIR SINE MIR 17 262 0 1981 152 0 16 chr4 52356191 52356506 -131932156 + AluSx SINE Alu 1 310 -2 266 132 11 132 chr4 52358304 52358395 -131930267 - MER102b DNA MER1_type -11 330 251 299 214 0 71 chr4 52358561 52358645 -131930017 + L2 LINE L2 3194 3271 -1 514 250 23 8 chr4 52358647 52358779 -131929883 - MER102b DNA MER1_type -163 178 45 192 152 0 0 chr4 52359451 52359484 -131929178 + CT-rich Low_complexity Low_complexity 2 34 0 5330 156 27 9 chr4 52359670 52360687 -131927975 - L1MB3 LINE L1 -1 6182 5149 560 275 52 64 chr4 52361342 52361575 -131927087 - MIR SINE MIR -15 247 18 351 324 144 37 chr4 52361615 52362019 -131926643 + L2 LINE L2 2826 3272 0 773 160 91 53 chr4 52362496 52362683 -131925979 + L1MC4 LINE L1 6459 6652 -1390 629 340 42 16 chr4 52362990 52363234 -131925428 - MIR SINE MIR -7 255 2 360 43 0 0 chr4 52364098 52364144 -131924518 + (GA)n Simple_repeat Simple_repeat 1 46 0 538 268 77 12 chr4 52365134 52365302 -131923360 - MIR SINE MIR -8 254 76 1030 323 92 42 chr4 52367318 52368116 -131920546 + L2 LINE L2 2197 3035 -237 210 366 98 0 chr4 52368271 52368353 -131920309 + L2 LINE L2 3163 3252 -20 2241 90 10 7 chr4 52369402 52369703 -131918959 - AluSq SINE Alu -11 302 1 275 311 101 8 chr4 52370316 52370435 -131918227 - MIR SINE MIR -58 150 21 28 0 0 0 chr4 52371678 52371706 -131916956 + AT_rich Low_complexity Low_complexity 1 28 0 468 229 29 35 chr4 52371885 52371905 -131916757 + MLT1H LTR MaLR 22 41 -508 2612 222 17 13 chr4 52371905 52372445 -131916217 - MLT1F LTR MaLR 0 542 1 468 229 29 35 chr4 52372445 52372570 -131916092 + MLT1H LTR MaLR 41 173 -376 2139 111 19 16 chr4 52372570 52372885 -131915777 + L1PA16 LINE L1 5825 6140 -26 266 49 0 24 chr4 52372885 52372926 -131915736 + (TAAAA)n Simple_repeat Simple_repeat 1 40 0 725 171 19 28 chr4 52373120 52373274 -131915388 + MLT1H LTR MaLR 431 549 0 351 321 126 26 chr4 52373274 52373623 -131915039 - L1MC4a LINE L1 -1898 5910 5527 193 293 0 40 chr4 52374207 52374282 -131914380 - MIR SINE MIR -127 135 64 576 275 61 55 chr4 52374397 52374798 -131913864 + MLT1L LTR MaLR 108 615 0 1505 144 120 4 chr4 52375517 52375801 -131912861 - MLT2D LTR ERVL -40 480 70 262 71 24 0 chr4 52375821 52375863 -131912799 + MADE1 DNA Mariner 1 43 -37 31964 100 8 25 chr4 52375863 52382344 -131906318 - L1PA7 LINE L1 -8 6461 2 373 125 0 0 chr4 52382345 52382401 -131906261 + MADE1 DNA Mariner 25 80 0 2332 208 22 20 chr4 52382438 52382895 -131905767 + MLT2B2 LTR ERVL 1 458 -57 332 236 14 28 chr4 52382896 52383040 -131905622 + CT-rich Low_complexity Low_complexity 4 145 0 243 83 0 0 chr4 52383065 52383101 -131905561 - MLT2D LTR ERVL -361 36 1 * 922 330 20 6 chr4 52383101 52383444 -131905218 + LTR16B LTR ERVL 43 390 -74 437 159 0 0 chr4 52384606 52384675 -131903987 + MER3 DNA MER1_type 140 208 -1 286 246 16 0 chr4 52384623 52384684 -131903978 - MER3 DNA MER1_type -108 101 40 * 278 294 33 11 chr4 52385034 52385126 -131903536 - L3b LINE CR1 -102 1481 1388 325 213 65 65 chr4 52385656 52385811 -131902851 - HAL1b LINE L1 -7 1341 1187 1706 149 0 0 chr4 52386046 52386294 -131902368 - AluSx SINE Alu -64 248 1 294 274 94 9 chr4 52386660 52386766 -131901896 + MIR SINE MIR 109 223 -39 871 140 53 0 chr4 52387610 52387760 -131900902 + MIR SINE MIR 81 238 -24 465 221 97 14 chr4 52387889 52388094 -131900568 - L1ME3 LINE L1 -333 5829 5640 318 250 125 17 chr4 52388301 52388421 -131900241 + MIR3 SINE MIR 76 208 0 192 309 15 15 chr4 52388413 52388481 -131900181 + L2 LINE L2 3241 3308 -5 * 239 244 122 22 chr4 52388861 52388951 -131899711 + L2 LINE L2 1652 1750 -1564 2625 119 89 5 chr4 52389230 52389625 -131899037 + MSTA LTR MaLR 1 428 0 651 162 36 0 chr4 52389639 52389750 -131898912 + MIR SINE MIR 124 238 -24 234 245 147 14 chr4 52389879 52389909 -131898753 - L1MC/D LINE L1 -1914 5871 5842 480 224 72 13 chr4 52389909 52390061 -131898601 - L1ME3 LINE L1 -333 5829 5669 575 230 77 81 chr4 52390110 52390319 -131898343 + MLT1J LTR MaLR 98 305 -206 1875 181 79 6 chr4 52390320 52390683 -131897979 + MLT1B LTR MaLR 3 396 0 620 232 36 7 chr4 52390683 52390812 -131897850 + MLT1J LTR MaLR 312 444 -67 195 267 53 27 chr4 52392008 52392083 -131896579 - MIR SINE MIR -2 260 184 290 222 0 42 chr4 52392092 52392164 -131896498 + MLT1L LTR MaLR 5 73 -542 272 222 0 0 chr4 52392369 52392423 -131896239 + MLT1J LTR MaLR 246 299 -212 448 222 47 53 chr4 52393071 52393242 -131895420 + MLT1L LTR MaLR 12 181 -434 4323 249 66 53 chr4 52393259 52394732 -131893930 - L1MCc LINE L1 -4915 1508 17 1212 257 77 44 chr4 52394759 52395511 -131893151 + L2 LINE L2 2530 3313 0 307 210 48 0 chr4 52397466 52397528 -131891134 - L2 LINE L2 0 3313 3249 2297 194 45 14 chr4 52397554 52397997 -131890665 - MLT1C LTR MaLR 0 467 11 230 267 145 38 chr4 52398530 52398661 -131890001 - MIR3 SINE MIR 0 208 64 256 282 28 0 chr4 52398717 52398788 -131889874 - MIR SINE MIR -181 81 9 231 376 20 13 chr4 52398863 52399012 -131889650 + L2 LINE L2 2639 2788 -526 974 295 101 36 chr4 52399247 52399694 -131888968 + MLT1J LTR MaLR 1 476 -35 2865 62 3 11 chr4 52399747 52400100 -131888562 + L1PA8 LINE L1 5822 6171 -1 506 300 40 20 chr4 52400173 52400323 -131888339 + MIR SINE MIR 1 153 -109 396 248 97 78 chr4 52400641 52400847 -131887815 - L3 LINE CR1 -1 1576 1367 418 229 39 34 chr4 52401029 52401208 -131887454 - Charlie7 DNA MER1_type -1 2611 2432 388 308 0 0 chr4 52401190 52401294 -131887368 - Charlie7 DNA MER1_type -2508 104 1 * 251 361 41 21 chr4 52401310 52401407 -131887255 + L2 LINE L2 3142 3240 -32 284 283 167 0 chr4 52401454 52401574 -131887088 + L2 LINE L2 2228 2367 -947 3388 264 123 41 chr4 52401611 52403131 -131885531 + L2 LINE L2 1135 2778 -536 2195 136 0 0 chr4 52403138 52403448 -131885214 + AluSx SINE Alu 1 310 -2 913 283 113 27 chr4 52403485 52403892 -131884770 + L2 LINE L2 2868 3309 -4 370 329 93 55 chr4 52404027 52404414 -131884248 + L2 LINE L2 2626 3037 -235 983 291 87 45 chr4 52404519 52404647 -131884015 - L2 LINE L2 0 3313 3192 2318 116 3 0 chr4 52404647 52404957 -131883705 + AluSx SINE Alu 1 311 -1 983 291 87 45 chr4 52404957 52405512 -131883150 - L2 LINE L2 -121 3192 2574 189 375 78 39 chr4 52405510 52405638 -131883024 + L2 LINE L2 3140 3272 0 * 2671 164 20 7 chr4 52405704 52406155 -131882507 - MSTB2 LTR MaLR 0 457 1 1577 119 123 8 chr4 52406513 52406764 -131881898 + AluSx SINE Alu 22 301 -11 183 42 0 0 chr4 52406832 52406856 -131881806 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 260 298 66 8 chr4 52406916 52407037 -131881625 + MIR SINE MIR 128 255 -7 480 196 0 37 chr4 52407344 52407451 -131881211 + ORSL DNA AcHobo 149 251 -24 195 42 0 0 chr4 52408322 52408346 -131880316 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 457 210 60 72 chr4 52408398 52408510 -131880152 - L2 LINE L2 -42 3271 3160 550 223 127 6 chr4 52408510 52408667 -131879995 - MER104 DNA MER2_type -1 179 4 457 210 60 72 chr4 52408667 52408721 -131879941 - L2 LINE L2 -153 3160 3107 4614 130 26 36 chr4 52408784 52409735 -131878927 - L1MB1 LINE L1 -2 6332 5372 475 245 104 0 chr4 52409757 52409863 -131878799 + L2 LINE L2 3154 3270 -2 319 242 82 28 chr4 52409916 52410035 -131878627 - MIR SINE MIR -63 145 40 23 0 0 0 chr4 52410109 52410132 -131878530 + AT_rich Low_complexity Low_complexity 1 23 0 2285 118 0 6 chr4 52410973 52411286 -131877376 - AluSx SINE Alu -1 311 1 416 242 16 62 chr4 52411286 52411403 -131877259 - L1ME3A LINE L1 -354 5816 5707 2933 85 0 0 chr4 52411444 52411796 -131876866 - THE1A LTR MaLR -3 352 1 12488 97 3 0 chr4 52411796 52413371 -131875291 - THE1A-int LTR MaLR 0 1580 1 3037 68 0 0 chr4 52413371 52413726 -131874936 - THE1A LTR MaLR 0 355 1 1351 231 43 48 chr4 52413751 52414123 -131874539 + MLT1A2 LTR MaLR 1 370 -4 589 261 6 45 chr4 52414141 52414317 -131874345 + L1ME3 LINE L1 5994 6162 0 231 88 0 0 chr4 52415345 52415379 -131873283 + (TC)n Simple_repeat Simple_repeat 1 34 0 483 300 146 9 chr4 52415709 52415929 -131872733 - MIR SINE MIR 0 262 13 3142 138 48 33 chr4 52416277 52416822 -131871840 - L1PA16 LINE L1 0 6166 5614 339 295 43 72 chr4 52417203 52417342 -131871320 - L2 LINE L2 -1 3271 3137 213 39 0 0 chr4 52419315 52419341 -131869321 + (TG)n Simple_repeat Simple_repeat 1 26 0 1859 152 48 63 chr4 52419547 52419943 -131868719 - MLT1B LTR MaLR 0 390 1 518 308 138 30 chr4 52419970 52420369 -131868293 - MLT1J1 LTR MaLR 0 446 5 2090 125 14 3 chr4 52422174 52422470 -131866192 + AluSx SINE Alu 5 303 -9 3161 226 20 11 chr4 52422478 52423125 -131865537 - MER82 DNA MER2_type 0 653 1 434 319 42 0 chr4 52423158 52423302 -131865360 + LTR16A LTR ERVL 9 158 -292 434 274 52 6 chr4 52423367 52423526 -131865136 + LTR16A LTR ERVL 226 443 -7 432 331 65 0 chr4 52423686 52423870 -131864792 + MER91A DNA MER1_type 1 196 0 251 276 17 0 chr4 52424267 52424325 -131864337 - MIR SINE MIR 0 262 204 462 239 106 21 chr4 52424415 52424603 -131864059 - MIR SINE MIR -56 206 3 26 30 0 0 chr4 52425298 52425331 -131863331 + AT_rich Low_complexity Low_complexity 1 33 0 726 268 24 14 chr4 52425684 52425893 -131862769 + MIR SINE MIR 2 212 -50 1826 161 18 12 chr4 52425977 52426306 -131862356 + L1MB7 LINE L1 5854 6184 0 294 95 0 0 chr4 52426760 52426802 -131861860 + (TG)n Simple_repeat Simple_repeat 2 43 0 361 267 167 41 chr4 52427628 52427849 -131860813 - MIR SINE MIR 0 262 14 327 330 68 70 chr4 52428003 52428430 -131860232 + L2 LINE L2 2431 2856 -458 1083 314 84 7 chr4 52428434 52428896 -131859766 - MLT1J LTR MaLR -8 503 6 604 274 81 5 chr4 52429226 52429449 -131859213 - L2 LINE L2 -258 3055 2816 894 281 25 0 chr4 52429465 52429707 -131858955 + MIR SINE MIR 2 249 -13 853 285 91 55 chr4 52429837 52430290 -131858372 - MLT1J LTR MaLR -4 507 39 2115 125 13 13 chr4 52430290 52430601 -131858061 + AluSx SINE Alu 1 311 -1 2067 182 25 6 chr4 52430760 52431118 -131857544 + MLT1A1 LTR MaLR 1 365 0 405 264 16 110 chr4 52431323 52431505 -131857157 + MER102a DNA MER1_type 166 330 0 180 348 0 0 chr4 52431551 52431620 -131857042 + L2 LINE L2 2809 2877 -395 359 328 52 0 chr4 52431637 52431753 -131856909 + L2 LINE L2 3147 3268 -4 189 0 0 0 chr4 52431827 52431848 -131856814 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 285 138 0 22 chr4 52431848 52431903 -131856759 - AluJo SINE Alu -20 282 240 842 192 16 22 chr4 52431908 52432090 -131856572 - AluJo SINE Alu -131 181 1 1140 300 92 54 chr4 52432339 52432987 -131855675 - L2 LINE L2 -620 2694 2005 2058 143 101 18 chr4 52432987 52433323 -131855339 - THE1B LTR MaLR 0 364 1 1140 300 92 54 chr4 52433323 52433523 -131855139 - L2 LINE L2 -1309 2005 1814 193 315 63 35 chr4 52433602 52433745 -131854917 - L2 LINE L2 -1368 1946 1800 192 77 0 0 chr4 52434019 52434045 -131854617 + (TG)n Simple_repeat Simple_repeat 1 26 0 1721 166 9 18 chr4 52434583 52434909 -131853753 - MER33 DNA MER1_type 0 324 2 480 254 127 41 chr4 52434970 52435067 -131853595 - MIR SINE MIR -6 256 169 2027 164 0 0 chr4 52435067 52435372 -131853290 - AluJb SINE Alu -7 305 1 480 254 127 41 chr4 52435372 52435471 -131853191 - MIR SINE MIR -93 169 43 523 344 55 28 chr4 52435770 52436133 -131852529 + L2 LINE L2 2831 3203 -69 506 202 0 0 chr4 52436860 52436949 -131851713 - MER58B DNA MER1_type -3 338 250 329 319 78 14 chr4 52436951 52437092 -131851570 + MIR SINE MIR 83 232 -30 30659 30 12 1 chr4 52437333 52441800 -131846862 + L1PA3 LINE L1 1706 6197 0 562 267 35 30 chr4 52441801 52442003 -131846659 - MLT1K LTR MaLR -61 527 325 585 268 71 10 chr4 52442013 52442211 -131846451 + MER58C DNA MER1_type 1 210 -5 455 276 167 45 chr4 52442374 52442954 -131845708 - L1MEd LINE L1 -5113 1006 356 744 275 34 4 chr4 52442983 52443252 -131845410 - L1MEd LINE L1 -5841 278 2 628 338 45 0 chr4 52443494 52443695 -131844967 + MIR SINE MIR 1 210 -52 1671 183 11 0 chr4 52443939 52444255 -131844407 + AluJb SINE Alu 1 312 0 264 100 0 0 chr4 52444255 52444295 -131844367 + (GGAA)n Simple_repeat Simple_repeat 1 40 0 368 293 112 60 chr4 52445313 52445562 -131843100 + L3 LINE CR1 1314 1575 -2 1593 66 5 5 chr4 52446166 52446378 -131842284 - L1PA6 LINE L1 -3 6151 5940 2334 259 42 28 chr4 52446551 52447562 -131841100 + HAL1b LINE L1 167 1191 -157 2043 132 68 14 chr4 52447574 52447929 -131840733 + THE1C LTR MaLR 1 374 -1 297 278 91 34 chr4 52448144 52448320 -131840342 + MLT1L LTR MaLR 197 382 -233 315 292 10 0 chr4 52448797 52448893 -131839769 - MIR SINE MIR -42 220 124 1147 180 111 69 chr4 52449003 52449216 -131839446 - MER7A DNA MER2_type -2693 345 114 23956 29 0 1 chr4 52449216 52452863 -131835799 + L1PA3 LINE L1 2503 6150 -5 1147 180 111 69 chr4 52452863 52452982 -131835680 - MER7A DNA MER2_type -2924 114 1 2017 138 39 36 chr4 52453197 52453560 -131835102 + THE1B LTR MaLR 1 364 0 470 299 0 8 chr4 52453567 52453684 -131834978 + L2 LINE L2 3193 3308 -5 553 264 146 9 chr4 52453784 52454004 -131834658 + MLT1J LTR MaLR 227 476 -35 23 0 0 0 chr4 52454114 52454137 -131834525 + AT_rich Low_complexity Low_complexity 1 23 0 860 310 85 26 chr4 52454167 52454660 -131834002 - MLT1K LTR MaLR -65 523 2 453 238 9 9 chr4 52454668 52454773 -131833889 - L2 LINE L2 0 3313 3209 1788 156 11 47 chr4 52454773 52455138 -131833524 - MLT1A1 LTR MaLR 0 365 14 559 265 36 6 chr4 52456301 52456467 -131832195 + MIR SINE MIR 85 255 -7 213 159 0 0 chr4 52456472 52456516 -131832146 + (CA)n Simple_repeat Simple_repeat 1 44 0 356 283 36 48 chr4 52456967 52457133 -131831529 - MIR3 SINE MIR -25 183 20 21 0 0 0 chr4 52457269 52457290 -131831372 + AT_rich Low_complexity Low_complexity 1 21 0 429 281 131 31 chr4 52457378 52457855 -131830807 - L1ME4a LINE L1 -95 6026 5494 2110 123 84 56 chr4 52458081 52458650 -131830012 - MER4A LTR ERV1 -21 444 1 390 319 41 76 chr4 52458756 52459191 -131829471 - L1ME4a LINE L1 -990 5156 4737 355 370 26 13 chr4 52459654 52459884 -131828778 - ERVL LTR ERVL -5152 612 380 355 176 152 44 chr4 52460146 52460303 -131828359 - LTR41 LTR ERVL -1 794 604 551 190 22 92 chr4 52460777 52460961 -131827701 - LTR41 LTR ERVL -602 171 1 2045 133 24 0 chr4 52461523 52461816 -131826846 + AluSx SINE Alu 1 300 -12 967 194 5 41 chr4 52461818 52462014 -131826648 + MER5A DNA MER1_type 1 189 0 462 234 78 26 chr4 52462040 52462194 -131826468 + MIR SINE MIR 86 247 -15 648 318 41 8 chr4 52462341 52462583 -131826079 - MIR SINE MIR -1 261 12 420 285 50 103 chr4 52463405 52463686 -131824976 - L2 LINE L2 0 3272 3007 322 294 68 7 chr4 52463697 52463843 -131824819 - MLT1L LTR MaLR 0 615 461 1743 158 10 14 chr4 52463843 52464135 -131824527 - MER1B DNA MER1_type 0 339 49 731 283 52 25 chr4 52464156 52464481 -131824181 - MLT1L LTR MaLR -149 466 133 2474 216 16 59 chr4 52464598 52465347 -131823315 - L1ME1 LINE L1 -4 6162 5446 1468 239 41 39 chr4 52465386 52465921 -131822741 - MER20B DNA MER1_type -66 717 182 4914 267 48 40 chr4 52465968 52468688 -131819974 + L1MA7 LINE L1 2 2393 -3957 386 272 246 5 chr4 52468925 52469120 -131819542 + MIR SINE MIR 18 259 -3 4263 206 12 19 chr4 52469893 52470178 -131818484 + L1MA7 LINE L1 2380 2666 -3684 1595 149 78 18 chr4 52470178 52470459 -131818203 + AluSx SINE Alu 1 298 -14 252 0 0 0 chr4 52470459 52470487 -131818175 + (TA)n Simple_repeat Simple_repeat 2 29 0 4263 206 12 19 chr4 52470487 52471309 -131817353 + L1MA7 LINE L1 2664 3480 -2870 6414 170 32 25 chr4 52471410 52473558 -131815104 + L1MA7 LINE L1 4104 6267 -228 390 21 0 0 chr4 52473558 52473605 -131815057 + (TTTTG)n Simple_repeat Simple_repeat 3 49 0 6414 170 32 25 chr4 52473605 52473786 -131814876 + L1MA7 LINE L1 6267 6445 -50 298 276 134 30 chr4 52474656 52474790 -131813872 - MIR SINE MIR -40 222 75 724 257 17 0 chr4 52474798 52474973 -131813689 - MIR SINE MIR 0 262 85 1686 191 54 0 chr4 52474973 52475380 -131813282 - MSTD LTR MaLR 0 396 1 276 77 0 0 chr4 52475479 52475518 -131813144 + (TG)n Simple_repeat Simple_repeat 1 39 0 2403 164 29 5 chr4 52475925 52476341 -131812321 + MSTB LTR MaLR 1 426 0 21 0 0 0 chr4 52477252 52477273 -131811389 + AT_rich Low_complexity Low_complexity 1 21 0 857 240 40 36 chr4 52477317 52477567 -131811095 + MIR SINE MIR 11 261 -1 240 217 0 0 chr4 52477852 52477898 -131810764 - L2 LINE L2 -1 3312 3267 582 250 81 0 chr4 52479225 52479373 -131809289 - MIR SINE MIR -3 259 100 213 121 0 0 chr4 52479966 52479999 -131808663 + (TCCA)n Simple_repeat Simple_repeat 2 34 0 417 299 47 8 chr4 52479999 52480126 -131808536 - L2 LINE L2 0 3272 3141 2644 128 70 4 chr4 52480455 52480923 -131807739 - Tigger3(Golem) DNA MER2_type -2 3027 2529 605 317 57 26 chr4 52481318 52481548 -131807114 - MIR SINE MIR -1 261 25 322 316 83 15 chr4 52482979 52483112 -131805550 + MIR SINE MIR 8 149 -113 229 239 84 14 chr4 52483271 52483342 -131805320 + MLT1I LTR MaLR 145 220 -189 294 200 13 0 chr4 52483343 52483418 -131805244 + MLT1J2 LTR MaLR 266 323 -127 266 303 11 0 chr4 52484615 52484704 -131803958 + MIR SINE MIR 163 252 -10 252 365 29 15 chr4 52484870 52485008 -131803654 + MIR SINE MIR 8 147 -61 476 294 88 12 chr4 52485190 52485360 -131803302 - MER5A DNA MER1_type 0 189 7 372 336 52 0 chr4 52485651 52485767 -131802895 + L2 LINE L2 3147 3268 -4 189 0 0 0 chr4 52485841 52485862 -131802800 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 269 114 0 23 chr4 52485865 52485909 -131802753 - AluJo SINE Alu -20 282 240 856 192 16 22 chr4 52485922 52486104 -131802558 - AluJo SINE Alu -131 181 1 1160 300 92 54 chr4 52486353 52487001 -131801661 - L2 LINE L2 -620 2694 2005 1901 143 101 18 chr4 52487001 52487337 -131801325 - THE1B LTR MaLR 0 364 1 1160 300 92 54 chr4 52487337 52487537 -131801125 - L2 LINE L2 -1309 2005 1814 193 315 63 35 chr4 52487616 52487759 -131800903 - L2 LINE L2 -1368 1946 1800 192 77 0 0 chr4 52488033 52488059 -131800603 + (TG)n Simple_repeat Simple_repeat 1 26 0 1553 166 9 18 chr4 52488597 52488923 -131799739 - MER33 DNA MER1_type 0 324 2 493 254 127 41 chr4 52488984 52489081 -131799581 - MIR SINE MIR -6 256 169 2003 171 0 0 chr4 52489081 52489385 -131799277 - AluJb SINE Alu -8 304 1 493 254 127 41 chr4 52489385 52489484 -131799178 - MIR SINE MIR -93 169 43 509 347 55 28 chr4 52489783 52490146 -131798516 + L2 LINE L2 2831 3203 -69 465 202 0 0 chr4 52490873 52490962 -131797700 - MER58B DNA MER1_type -3 338 250 336 319 78 14 chr4 52490964 52491105 -131797557 + MIR SINE MIR 83 232 -30 31061 34 0 1 chr4 52491346 52495799 -131792863 + L1PA3 LINE L1 1706 6155 0 538 219 9 0 chr4 52495808 52495913 -131792749 - MER7A DNA MER2_type -242 104 1 2186 138 39 36 chr4 52496128 52496491 -131792171 + THE1B LTR MaLR 1 364 0 466 299 0 8 chr4 52496498 52496615 -131792047 + L2 LINE L2 3193 3308 -5 637 264 146 9 chr4 52496715 52496935 -131791727 + MLT1J LTR MaLR 227 476 -35 23 0 0 0 chr4 52497045 52497068 -131791594 + AT_rich Low_complexity Low_complexity 1 23 0 1018 310 85 26 chr4 52497098 52497591 -131791071 - MLT1K LTR MaLR -65 523 2 443 238 9 9 chr4 52497599 52497704 -131790958 - L2 LINE L2 0 3313 3209 1925 159 11 47 chr4 52497704 52498069 -131790593 - MLT1A1 LTR MaLR 0 365 14 551 265 36 6 chr4 52499232 52499398 -131789264 + MIR SINE MIR 85 255 -7 213 159 0 0 chr4 52499403 52499447 -131789215 + (CA)n Simple_repeat Simple_repeat 1 44 0 351 283 36 48 chr4 52499898 52500064 -131788598 - MIR3 SINE MIR -25 183 20 21 0 0 0 chr4 52500200 52500221 -131788441 + AT_rich Low_complexity Low_complexity 1 21 0 562 285 127 27 chr4 52500309 52500786 -131787876 - L1ME4a LINE L1 -95 6026 5494 2294 124 83 56 chr4 52501012 52501581 -131787081 - MER4A LTR ERV1 -21 444 1 364 319 41 76 chr4 52501687 52502122 -131786540 - L1ME4a LINE L1 -990 5156 4737 420 359 31 23 chr4 52502585 52502844 -131785818 - ERVL LTR ERVL -5152 612 352 604 217 92 134 chr4 52503077 52503891 -131784771 - LTR41 LTR ERVL -1 794 1 2023 134 24 0 chr4 52504453 52504745 -131783917 + AluSx SINE Alu 1 299 -13 1048 194 5 41 chr4 52504747 52504943 -131783719 + MER5A DNA MER1_type 1 189 0 449 234 78 26 chr4 52504969 52505123 -131783539 + MIR SINE MIR 86 247 -15 605 322 41 8 chr4 52505270 52505512 -131783150 - MIR SINE MIR -1 261 12 400 287 50 106 chr4 52506334 52506616 -131782046 - L2 LINE L2 0 3272 3007 380 294 68 7 chr4 52506627 52506773 -131781889 - MLT1L LTR MaLR 0 615 461 1862 158 10 14 chr4 52506773 52507065 -131781597 - MER1B DNA MER1_type 0 339 49 875 268 96 23 chr4 52507065 52507408 -131781254 - MLT1L LTR MaLR -115 500 133 606 182 6 111 chr4 52507509 52507690 -131780972 - L1MA10 LINE L1 -1 6333 6172 2340 112 3 3 chr4 52508007 52508319 -131780343 + AluSx SINE Alu 1 312 0 225 196 0 0 chr4 52508878 52508929 -131779733 + (AAATG)n Simple_repeat Simple_repeat 5 55 0 495 270 126 43 chr4 52510014 52510076 -131778586 - L1ME LINE L1 -331 5790 5735 2216 137 0 3 chr4 52510076 52510389 -131778273 - AluSx SINE Alu 0 312 1 495 270 126 43 chr4 52510389 52510811 -131777851 - L1ME LINE L1 -386 5735 5266 23 33 0 0 chr4 52510811 52510841 -131777821 + AT_rich Low_complexity Low_complexity 1 30 0 774 165 0 0 chr4 52510841 52510968 -131777694 - L1MA3 LINE L1 0 6305 6179 617 92 55 9 chr4 52510969 52511078 -131777584 + L1M1 LINE L1 5570 5683 -622 965 338 54 35 chr4 52511977 52512518 -131776144 + MLT1K LTR MaLR 12 562 -26 467 257 86 13 chr4 52512579 52512731 -131775931 + MIR3 SINE MIR 15 177 -31 207 264 0 103 chr4 52513427 52513514 -131775148 + MIR SINE MIR 185 262 0 946 224 175 60 chr4 52513568 52514032 -131774630 + LTR33A LTR ERVL 4 520 -3 234 0 0 0 chr4 52514500 52514526 -131774136 + (T)n Simple_repeat Simple_repeat 1 26 0 237 137 39 59 chr4 52514575 52514626 -131774036 + LTR67 LTR ERVL 104 153 -404 * 510 265 85 69 chr4 52514587 52514847 -131773815 + MLT1J LTR MaLR 110 373 -138 1554 186 35 0 chr4 52514907 52515192 -131773470 - AluJo SINE Alu -14 298 4 279 256 81 0 chr4 52515212 52515298 -131773364 + MLT1J LTR MaLR 417 509 -2 2078 159 32 27 chr4 52515432 52515765 -131772897 + MLT2D LTR ERVL 3 387 -77 1871 166 0 10 chr4 52515765 52516066 -131772596 - AluJb SINE Alu -12 300 3 2078 159 32 27 chr4 52516066 52516125 -131772537 + MLT2D LTR ERVL 387 444 -20 258 56 0 0 chr4 52516134 52516170 -131772492 + (CA)n Simple_repeat Simple_repeat 1 36 0 275 80 0 60 chr4 52516216 52516266 -131772396 + MLT2D LTR ERVL 469 515 0 472 307 85 16 chr4 52517167 52517356 -131771306 + MER58C DNA MER1_type 5 206 -9 465 283 161 10 chr4 52517644 52517849 -131770813 - MIR SINE MIR -25 237 2 1149 245 155 59 chr4 52518432 52518784 -131769878 - MLT1D LTR MaLR 0 505 98 2104 107 7 17 chr4 52518784 52519073 -131769589 - AluSx SINE Alu -25 287 2 1149 245 155 59 chr4 52519073 52519177 -131769485 - MLT1D LTR MaLR -407 98 5 465 270 95 102 chr4 52519337 52519712 -131768950 - MLT1J LTR MaLR -50 461 88 414 0 0 0 chr4 52519712 52519758 -131768904 + (TG)n Simple_repeat Simple_repeat 1 46 0 465 270 95 102 chr4 52519758 52519845 -131768817 - MLT1J LTR MaLR -423 88 2 570 276 65 30 chr4 52519923 52520155 -131768507 - MIR SINE MIR 0 262 23 213 213 21 0 chr4 52520700 52520747 -131767915 + CT-rich Low_complexity Low_complexity 5 52 0 1408 258 24 52 chr4 52522482 52522947 -131765715 - L1ME3 LINE L1 -32 6130 5679 773 67 126 0 chr4 52523398 52523517 -131765145 - LTR9B LTR ERV1 -63 581 448 1130 94 13 158 chr4 52523519 52523594 -131765068 - LTR9B LTR ERV1 -441 203 119 2004 103 26 0 chr4 52523594 52523865 -131764797 - AluSg SINE Alu -32 278 1 1130 94 13 158 chr4 52523865 52524023 -131764639 - LTR9B LTR ERV1 -525 119 4 247 253 71 10 chr4 52524156 52524255 -131764407 + L2 LINE L2 3150 3254 -18 3888 158 14 34 chr4 52525246 52525525 -131763137 - L1MC1 LINE L1 -4 6329 6046 1911 129 31 7 chr4 52525525 52525819 -131762843 - AluSg SINE Alu -9 301 1 3888 158 14 34 chr4 52525819 52526240 -131762422 - L1MC1 LINE L1 -287 6046 5643 2613 72 6 0 chr4 52526609 52526930 -131761732 + L1PA10 LINE L1 5842 6164 -4 1589 221 124 45 chr4 52527224 52527420 -131761242 + MLT1D LTR MaLR 1 180 -325 2295 101 0 13 chr4 52527420 52527736 -131760926 + AluSx SINE Alu 1 312 0 1589 221 124 45 chr4 52527736 52528005 -131760657 + MLT1D LTR MaLR 180 503 -2 279 204 0 0 chr4 52528074 52528123 -131760539 + LTR67 LTR ERVL 12 60 -497 1019 246 124 29 chr4 52528822 52529233 -131759429 + MLT1J2 LTR MaLR 1 450 0 920 125 0 8 chr4 52529540 52529668 -131758994 - FLAM_C SINE Alu -2 131 5 690 284 112 32 chr4 52529742 52530306 -131758356 - L1ME4a LINE L1 -217 5904 5296 526 143 19 48 chr4 52530378 52530483 -131758179 - L2 LINE L2 -6 3307 3206 218 292 23 69 chr4 52530513 52530643 -131758019 + L2 LINE L2 3136 3259 -13 390 216 144 102 chr4 52530789 52530956 -131757706 + MER5B DNA MER1_type 4 177 -1 287 129 145 16 chr4 52531205 52531267 -131757395 + L2 LINE L2 3189 3258 -55 735 264 79 58 chr4 52533529 52533572 -131755090 - MLT1K LTR MaLR 0 588 547 1862 144 24 7 chr4 52533572 52533864 -131754798 - AluSx SINE Alu -15 297 1 735 264 79 58 chr4 52533864 52534112 -131754550 - MLT1K LTR MaLR -41 547 291 211 213 0 43 chr4 52534657 52534704 -131753958 - MER5A DNA MER1_type -32 157 113 403 278 37 47 chr4 52535019 52535236 -131753426 + MLT1H LTR MaLR 75 292 -117 251 248 99 30 chr4 52535278 52535379 -131753283 + MLT1H LTR MaLR 423 530 -19 200 242 168 21 chr4 52535653 52535748 -131752914 - L2 LINE L2 -11 3261 3153 981 180 35 0 chr4 52536109 52536281 -131752381 - MER45A DNA AcHobo 0 178 1 190 143 0 0 chr4 52537149 52537177 -131751485 + MER5A DNA MER1_type 1 28 -161 626 156 0 0 chr4 52537205 52537295 -131751367 + AluSg/x SINE Alu 196 285 -27 550 26 26 0 chr4 52537295 52537371 -131751291 + (TAGA)n Simple_repeat Simple_repeat 4 81 0 449 207 12 0 chr4 52537382 52537464 -131751198 + MER5A DNA MER1_type 86 168 -21 2073 169 42 26 chr4 52537496 52537880 -131750782 - MLT1B LTR MaLR 0 390 1 358 286 241 5 chr4 52537935 52538138 -131750524 - MIR SINE MIR 0 262 12 288 231 54 54 chr4 52538192 52538322 -131750340 - L1MC/D LINE L1 -1963 5845 5716 5070 173 40 25 chr4 52538324 52538782 -131749880 - L1MA9 LINE L1 -38 6274 5825 279 0 0 0 chr4 52538782 52538813 -131749849 + (TG)n Simple_repeat Simple_repeat 2 32 0 5070 173 40 25 chr4 52538813 52539796 -131748866 - L1MA9 LINE L1 -487 5825 4805 246 286 44 22 chr4 52540099 52540190 -131748472 + L2 LINE L2 3163 3255 -17 2210 175 3 6 chr4 52540272 52540610 -131748052 + MER1B DNA MER1_type 1 337 0 378 316 220 24 chr4 52541431 52541640 -131747022 - MIR SINE MIR 0 262 13 2214 128 0 0 chr4 52543191 52543488 -131745174 - AluSx SINE Alu -13 299 3 263 93 23 0 chr4 52543527 52543570 -131745092 + (CA)n Simple_repeat Simple_repeat 1 44 0 459 229 70 55 chr4 52544387 52544588 -131744074 - MLT1J LTR MaLR -30 466 213 541 287 11 33 chr4 52544621 52544780 -131743882 - MLT1J LTR MaLR -312 199 43 2140 129 7 0 chr4 52544780 52545090 -131743572 + AluSx SINE Alu 1 312 0 541 287 11 33 chr4 52545090 52545111 -131743551 - MLT1J LTR MaLR -468 43 23 949 261 120 7 chr4 52546008 52546291 -131742371 + MLT1J LTR MaLR 1 315 -196 952 134 34 68 chr4 52546410 52546448 -131742214 + THE1C LTR MaLR 175 213 -162 204 40 0 0 chr4 52546448 52546473 -131742189 + (TC)n Simple_repeat Simple_repeat 1 25 0 952 134 34 68 chr4 52546473 52546644 -131742018 + THE1C LTR MaLR 213 373 -2 441 235 134 0 chr4 52547555 52547674 -131740988 - MLT1J LTR MaLR -450 143 9 22 0 0 0 chr4 52549331 52549353 -131739309 + AT_rich Low_complexity Low_complexity 1 22 0 253 185 37 0 chr4 52549897 52549951 -131738711 + MER5A DNA MER1_type 9 64 -125 1644 163 35 3 chr4 52549954 52550370 -131738292 + L1MB7 LINE L1 5057 5490 -688 1229 180 33 25 chr4 52550345 52550589 -131738073 + L1MB7 LINE L1 5808 6053 -131 * 277 339 18 41 chr4 52550694 52550865 -131737797 + MIR SINE MIR 77 243 -19 535 294 115 32 chr4 52550878 52551314 -131737348 - L2 LINE L2 -9 3304 2833 215 344 128 18 chr4 52551816 52552043 -131736619 + L2 LINE L2 3049 3300 -13 810 258 32 40 chr4 52553114 52553366 -131735296 + Charlie8 DNA MER1_type 1 250 -2167 184 183 83 0 chr4 52553500 52553560 -131735102 + MIR SINE MIR 122 186 -76 1186 161 8 1 chr4 52553688 52554706 -131733956 - ALR/Alpha Satellite centromeric 0 1025 1 1201 165 7 1 chr4 52554717 52556571 -131732091 - ALR/Alpha Satellite centromeric 0 1864 1 1179 171 6 1 chr4 52556582 52558437 -131730225 - ALR/Alpha Satellite centromeric 0 1865 1 1211 169 7 2 chr4 52558448 52560300 -131728362 - ALR/Alpha Satellite centromeric 0 1861 1 1160 173 6 1 chr4 52560311 52562165 -131726497 - ALR/Alpha Satellite centromeric 0 1863 1 1201 164 6 1 chr4 52562176 52564031 -131724631 - ALR/Alpha Satellite centromeric 0 1864 1 911 207 9 3 chr4 52564042 52564659 -131724003 - ALR/Alpha Satellite centromeric 0 620 1 184 341 49 57 chr4 52565313 52565436 -131723226 + MIR SINE MIR 28 149 -113 1032 181 13 48 chr4 52565789 52566016 -131722646 - MER20 DNA MER1_type 0 219 1 279 222 14 0 chr4 52566024 52566096 -131722566 - MIR SINE MIR -72 190 118 287 217 75 19 chr4 52566329 52566435 -131722227 - L2 LINE L2 -1245 2069 1958 1812 140 59 0 chr4 52567701 52567972 -131720690 + AluSx SINE Alu 1 287 -25 24 0 0 0 chr4 52568071 52568095 -131720567 + AT_rich Low_complexity Low_complexity 1 24 0 260 278 50 83 chr4 52568189 52568369 -131720293 - MIR SINE MIR -79 183 10 1879 178 81 14 chr4 52568375 52568746 -131719916 - MSTD LTR MaLR 0 396 1 2287 104 0 0 chr4 52569035 52569323 -131719339 + AluSg SINE Alu 1 288 -22 264 299 67 60 chr4 52570309 52570364 -131718298 - MIR SINE MIR -108 154 101 1636 188 0 21 chr4 52570364 52570815 -131717847 + AluJo SINE Alu 1 445 0 264 299 67 60 chr4 52570815 52570890 -131717772 - MIR SINE MIR -161 101 20 484 284 53 6 chr4 52571419 52571588 -131717074 + Charlie8 DNA MER1_type 2 178 -2239 517 202 180 28 chr4 52571899 52572154 -131716508 + MLT1H LTR MaLR 235 616 -8 309 26 0 0 chr4 52572289 52572327 -131716335 + (CA)n Simple_repeat Simple_repeat 1 38 0 359 202 138 0 chr4 52572339 52572433 -131716229 + L2 LINE L2 3207 3313 0 2068 132 3 3 chr4 52573219 52573523 -131715139 + AluSx SINE Alu 1 304 -8 254 213 0 0 chr4 52573874 52573921 -131714741 + MLT1K LTR MaLR 2 48 -540 21 0 0 0 chr4 52574256 52574277 -131714385 + AT_rich Low_complexity Low_complexity 1 21 0 587 231 64 44 chr4 52574724 52574927 -131713735 + MIR SINE MIR 41 247 -15 910 180 22 142 chr4 52575385 52575702 -131712960 + MLT1A1 LTR MaLR 1 279 -86 229 308 90 13 chr4 52575808 52575886 -131712776 + ORSL DNA AcHobo 192 275 0 27 49 0 0 chr4 52576607 52576648 -131712014 + AT_rich Low_complexity Low_complexity 1 41 0 339 316 38 38 chr4 52577070 52577228 -131711434 - MIR SINE MIR -76 186 29 430 197 177 44 chr4 52578772 52578975 -131709687 + L2 LINE L2 3078 3307 -6 408 20 0 0 chr4 52578976 52579025 -131709637 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 181 247 182 0 chr4 52579166 52579243 -131709419 + MIR SINE MIR 2 92 -170 1362 137 9 13 chr4 52580316 52580520 -131708142 - L1MA9 LINE L1 -321 5991 5787 333 0 0 0 chr4 52580520 52580557 -131708105 + (CA)n Simple_repeat Simple_repeat 1 37 0 1362 137 9 13 chr4 52580557 52580578 -131708084 - L1MA9 LINE L1 -525 5787 5767 1052 125 0 59 chr4 52580589 52580628 -131708034 + L1M2 LINE L1 5403 5443 -721 1775 162 0 37 chr4 52580628 52580925 -131707737 + AluSx SINE Alu 1 286 -26 279 0 0 0 chr4 52580925 52580956 -131707706 + (CA)n Simple_repeat Simple_repeat 2 32 0 1052 125 0 59 chr4 52580956 52581107 -131707555 + L1M2 LINE L1 5441 5582 -582 272 360 43 12 chr4 52581248 52581412 -131707250 + MIR SINE MIR 19 187 -75 365 260 0 10 chr4 52581608 52581708 -131706954 + L1MA10 LINE L1 6171 6269 -65 1718 201 0 0 chr4 52581715 52582014 -131706648 - AluJb SINE Alu -13 299 1 332 208 0 0 chr4 52582015 52582092 -131706570 + L1MA10 LINE L1 6256 6332 -2 1104 286 64 60 chr4 52584049 52584644 -131704018 + MLT1L LTR MaLR 1 597 -18 238 266 81 24 chr4 52584862 52584986 -131703676 + MIR SINE MIR 126 256 -6 30 0 0 0 chr4 52585001 52585031 -131703631 + AT_rich Low_complexity Low_complexity 1 30 0 206 185 46 15 chr4 52585196 52585261 -131703401 + T-rich Low_complexity Low_complexity 5 71 0 7239 43 1 1 chr4 52585261 52586125 -131702537 - L1PA3 LINE L1 0 6155 5292 181 284 68 14 chr4 52586309 52586383 -131702279 + MIR SINE MIR 64 141 -67 211 184 0 68 chr4 52586383 52586486 -131702176 + GA-rich Low_complexity Low_complexity 2 97 0 1314 225 79 32 chr4 52586512 52587074 -131701588 - L1MEc LINE L1 -3633 2582 2033 43351 35 23 1 chr4 52587076 52593095 -131695567 + L1PA2 LINE L1 1 6154 -1 2306 241 61 51 chr4 52593128 52594077 -131694585 - L1MEc LINE L1 -4358 2038 1080 484 214 38 8 chr4 52594089 52594220 -131694442 + L1MC4 LINE L1 7108 7242 -800 25 0 0 0 chr4 52594447 52594472 -131694190 + AT_rich Low_complexity Low_complexity 1 25 0 355 270 102 36 chr4 52594642 52594779 -131693883 + L2 LINE L2 3168 3313 0 1778 171 0 0 chr4 52594814 52595088 -131693574 + AluJo SINE Alu 7 280 -32 330 26 0 0 chr4 52595088 52595127 -131693535 + (GAA)n Simple_repeat Simple_repeat 1 39 0 863 236 79 9 chr4 52595364 52595593 -131693069 + MIR SINE MIR 18 262 0 1680 159 40 14 chr4 52595631 52595907 -131692755 + AluSx SINE Alu 3 285 -27 439 224 84 96 chr4 52595966 52596233 -131692429 - MIR SINE MIR 0 262 16 28794 53 1 2 chr4 52597069 52600630 -131688032 - L1P LINE L1 -2582 3564 8 287 311 136 34 chr4 52600649 52600689 -131687973 - MIR SINE MIR -48 214 179 263 28 28 0 chr4 52600689 52600725 -131687937 + (TA)n Simple_repeat Simple_repeat 1 37 0 2063 130 0 7 chr4 52600725 52601017 -131687645 - AluSg SINE Alu -20 290 1 287 311 136 34 chr4 52601017 52601152 -131687510 - MIR SINE MIR -82 180 20 354 91 0 0 chr4 52601614 52601669 -131686993 + (GA)n Simple_repeat Simple_repeat 2 56 0 234 264 57 38 chr4 52601968 52602074 -131686588 + L3 LINE CR1 1451 1558 -19 2514 123 82 12 chr4 52602229 52602629 -131686033 + MSTA LTR MaLR 1 428 0 8634 189 22 9 chr4 52602629 52604198 -131684464 + MSTA-int LTR MaLR 1 1589 -62 20853 122 9 11 chr4 52604205 52607353 -131681309 + L1P LINE L1 11 3151 -2995 7687 52 0 1 chr4 52607453 52608491 -131680171 + L1PA6 LINE L1 5118 6154 0 559 106 0 12 chr4 52608493 52608578 -131680084 + MSTA-int LTR MaLR 1568 1651 0 2244 144 83 10 chr4 52608578 52608973 -131679689 + MSTA LTR MaLR 1 424 -4 1108 245 107 27 chr4 52609409 52610658 -131678004 + HAL1 LINE L1 10 1157 -1350 1376 256 72 43 chr4 52610658 52611100 -131677562 + LTR16A1 LTR ERVL 3 457 0 1108 245 107 27 chr4 52611100 52611415 -131677247 + HAL1 LINE L1 1157 1445 -1062 3657 181 44 31 chr4 52611415 52612126 -131676536 - MER72 LTR ERV1 -2 720 1 1108 245 107 27 chr4 52612126 52612293 -131676369 + HAL1 LINE L1 1445 1597 -910 1945 143 33 0 chr4 52612293 52612593 -131676069 + AluSx SINE Alu 1 310 -2 1108 245 107 27 chr4 52612593 52613041 -131675621 + HAL1 LINE L1 1597 2507 0 342 349 68 36 chr4 52614457 52614709 -131673953 + MIR SINE MIR 3 262 0 230 269 0 60 chr4 52614860 52614927 -131673735 - MIR SINE MIR -169 93 31 2024 222 65 16 chr4 52616024 52616515 -131672147 + L1ME1 LINE L1 5647 6161 -5 480 310 71 41 chr4 52616537 52617027 -131671635 + L1ME4a LINE L1 5382 5886 -235 777 256 43 17 chr4 52617061 52617295 -131671367 + MIR SINE MIR 2 241 -21 33 43 0 0 chr4 52617701 52617748 -131670914 + AT_rich Low_complexity Low_complexity 1 47 0 952 135 0 0 chr4 52618684 52618825 -131669837 + AluJb SINE Alu 1 141 -171 337 120 0 0 chr4 52619437 52619487 -131669175 + MADE1 DNA Mariner 1 50 -30 843 222 96 10 chr4 52619487 52619685 -131668977 + MIR SINE MIR 12 226 -36 2020 135 21 0 chr4 52619808 52620097 -131668565 + AluSq SINE Alu 1 295 -18 310 346 77 0 chr4 52620210 52620366 -131668296 + MIR SINE MIR 50 217 -45 22 56 0 0 chr4 52620814 52620850 -131667812 + AT_rich Low_complexity Low_complexity 1 36 0 2282 157 74 39 chr4 52621725 52622074 -131666588 + L1MA10 LINE L1 5774 6146 -188 2114 128 0 10 chr4 52622074 52622387 -131666275 - AluSx SINE Alu -2 310 1 2282 157 74 39 chr4 52622387 52622521 -131666141 + L1MA10 LINE L1 6146 6274 -60 1311 174 113 14 chr4 52622522 52622815 -131665847 - MER2 DNA MER2_type -1 344 23 305 129 0 65 chr4 52622828 52622890 -131665772 + L1MA10 LINE L1 6277 6334 0 643 309 10 101 chr4 52623365 52623851 -131664811 + L2 LINE L2 2831 3272 0 1182 258 123 15 chr4 52624981 52625381 -131663281 - MLT1J1 LTR MaLR -2 444 2 420 20 0 0 chr4 52625581 52625630 -131663032 + (CA)n Simple_repeat Simple_repeat 1 49 0 462 294 63 11 chr4 52626646 52627013 -131661649 - L1MEc LINE L1 -4109 2287 1902 1191 270 93 58 chr4 52627037 52627429 -131661233 - L1MEc LINE L1 -4579 1817 1440 1748 161 0 32 chr4 52627429 52627739 -131660923 - AluJo SINE Alu -12 300 1 1191 270 93 58 chr4 52627739 52628320 -131660342 - L1MEc LINE L1 -4956 1440 810 3578 126 37 14 chr4 52628939 52629527 -131659135 - L1MA8 LINE L1 -2 6289 5688 212 269 39 0 chr4 52629695 52629747 -131658915 - MER5A DNA MER1_type -135 54 1 238 236 225 0 chr4 52630321 52630410 -131658252 + MLT1L LTR MaLR 507 615 0 263 204 19 17 chr4 52631837 52631913 -131656749 + FLAM SINE Alu 68 131 -2 430 351 96 4 chr4 52632314 52632553 -131656109 - MIR SINE MIR -1 261 1 751 248 88 13 chr4 52632696 52632922 -131655740 - MIR SINE MIR -19 243 1 656 274 28 16 chr4 52632989 52633244 -131655418 + L1MC1 LINE L1 5601 5858 -475 * 4364 30 0 0 chr4 52633020 52633560 -131655102 + L1PA3 LINE L1 5635 6174 0 255 100 25 0 chr4 52633887 52633927 -131654735 - MSTD LTR MaLR -354 42 2 22 35 0 0 chr4 52634030 52634059 -131654603 + AT_rich Low_complexity Low_complexity 1 29 0 693 172 22 52 chr4 52634162 52634296 -131654366 + FLAM_A SINE Alu 1 130 -3 735 294 27 32 chr4 52634538 52634861 -131653801 + L1MC/D LINE L1 5386 5709 -442 2474 68 7 7 chr4 52634944 52635251 -131653411 + AluSc SINE Alu 1 307 -2 504 203 148 0 chr4 52635370 52635498 -131653164 + MIR SINE MIR 116 262 0 188 261 261 0 chr4 52636075 52636163 -131652499 - L3b LINE CR1 -255 1328 1218 731 270 159 3 chr4 52636575 52636871 -131651791 + L2 LINE L2 2969 3310 -3 291 396 42 0 chr4 52637044 52637140 -131651522 + L2 LINE L2 3155 3254 -18 2194 129 0 0 chr4 52637148 52637459 -131651203 + AluSx SINE Alu 1 311 -1 390 194 46 46 chr4 52637482 52637590 -131651072 - MIR SINE MIR -31 231 124 182 277 0 0 chr4 52637853 52637900 -131650762 + L2 LINE L2 3256 3302 -11 432 147 0 39 chr4 52637904 52638006 -131650656 + (GGAA)n Simple_repeat Simple_repeat 2 99 0 645 174 13 31 chr4 52638011 52638392 -131650270 + GA-rich Low_complexity Low_complexity 1 374 0 203 333 93 19 chr4 52638901 52639009 -131649653 + L2 LINE L2 3127 3242 -30 354 253 103 20 chr4 52639051 52639197 -131649465 + MER46C DNA MER2_type 1 158 -180 1177 222 9 9 chr4 52639197 52639427 -131649235 + Tigger7 DNA MER2_type 1 230 -475 1713 179 11 11 chr4 52639462 52639747 -131648915 + AluJb SINE Alu 1 285 -27 305 214 0 24 chr4 52639749 52639833 -131648829 + GA-rich Low_complexity Low_complexity 3 84 0 * 751 92 8 8 chr4 52639814 52639933 -131648729 + (GAAA)n Simple_repeat Simple_repeat 4 122 0 471 214 10 0 chr4 52639937 52640035 -131648627 + Tigger7 DNA MER2_type 2389 2487 0 577 200 93 13 chr4 52640051 52640201 -131648461 + MER46C DNA MER2_type 164 325 -13 408 306 67 11 chr4 52640222 52640402 -131648260 - L2 LINE L2 -38 3275 3086 249 310 0 0 chr4 52640494 52640552 -131648110 + L2 LINE L2 2908 2965 -349 1868 133 7 0 chr4 52644340 52644611 -131644051 - AluSx SINE Alu -39 273 1 215 250 150 12 chr4 52645962 52646042 -131642620 - L2 LINE L2 -13 3259 3169 1981 81 4 0 chr4 52646076 52646323 -131642339 + AluSp SINE Alu 53 300 -13 2457 85 3 0 chr4 52646517 52646822 -131641840 + AluSp SINE Alu 1 306 -7 180 396 43 0 chr4 52647314 52647453 -131641209 - L2 LINE L2 -913 2401 2257 1993 158 0 0 chr4 52647701 52647992 -131640670 + AluSx SINE Alu 1 291 -21 2168 115 3 3 chr4 52648180 52648484 -131640178 + AluSg SINE Alu 1 304 -6 461 312 122 5 chr4 52648579 52648800 -131639862 + MIR SINE MIR 2 248 -14 328 42 0 21 chr4 52649247 52649295 -131639367 + MADE1 DNA Mariner 34 80 0 951 206 78 18 chr4 52649354 52649573 -131639089 + MIR SINE MIR 14 245 -17 267 341 24 0 chr4 52649583 52649665 -131638997 - MIR SINE MIR -61 147 64 5618 103 3 3 chr4 52649665 52650448 -131638214 + L1PA13 LINE L1 5381 6163 0 252 205 108 108 chr4 52650883 52650966 -131637696 + L3b LINE CR1 1404 1486 -97 293 68 136 0 chr4 52651104 52651148 -131637514 + MADE1 DNA Mariner 31 80 0 339 298 174 32 chr4 52651148 52651366 -131637296 + MIR SINE MIR 5 253 -9 363 322 91 0 chr4 52651596 52651739 -131636923 + L2 LINE L2 2616 2771 -543 1783 139 11 17 chr4 52651763 52652050 -131636612 + AluJb SINE Alu 1 285 -27 366 242 0 0 chr4 52652085 52652147 -131636515 - MER91A DNA MER1_type -42 154 93 1317 260 60 35 chr4 52652197 52652678 -131635984 + L2 LINE L2 2821 3313 0 288 321 0 0 chr4 52653010 52653094 -131635568 + MIR SINE MIR 36 119 -89 321 350 28 47 chr4 52653102 52653316 -131635346 - L2 LINE L2 -756 2558 2349 182 300 17 17 chr4 52653339 52653399 -131635263 - L2 LINE L2 -520 2794 2735 812 257 84 53 chr4 52653481 52653897 -131634765 + L2 LINE L2 2854 3282 -31 546 181 0 11 chr4 52653897 52653991 -131634671 + L2 LINE L2 3213 3305 -8 204 298 0 0 chr4 52654150 52654197 -131634465 - MIR3 SINE MIR -54 154 108 438 260 119 62 chr4 52654507 52654544 -131634118 - MIR SINE MIR -11 251 218 2633 156 34 19 chr4 52654544 52655018 -131633644 + L1MB5 LINE L1 5688 6168 -6 438 260 119 62 chr4 52655018 52655207 -131633455 - MIR SINE MIR -44 218 12 1118 166 0 0 chr4 52655450 52655625 -131633037 - FRAM SINE Alu -2 174 1 1920 141 26 10 chr4 52655658 52655963 -131632699 + AluSq SINE Alu 1 310 -3 691 252 60 41 chr4 52657409 52657571 -131631091 + MIR SINE MIR 5 173 -89 2088 117 20 3 chr4 52657571 52657871 -131630791 - AluSx SINE Alu -7 305 1 691 252 60 41 chr4 52657871 52657926 -131630736 + MIR SINE MIR 173 226 -36 26 0 0 0 chr4 52657971 52657997 -131630665 + AT_rich Low_complexity Low_complexity 1 26 0 332 219 247 7 chr4 52658436 52658582 -131630080 - MIR SINE MIR -47 215 35 237 287 52 81 chr4 52658714 52658828 -131629834 + L2 LINE L2 2237 2353 -961 1064 155 42 28 chr4 52658828 52659041 -131629621 + MER20 DNA MER1_type 4 219 0 237 287 52 81 chr4 52659041 52659198 -131629464 + L2 LINE L2 2353 2500 -814 1649 91 0 0 chr4 52659228 52659427 -131629235 + AluSx SINE Alu 1 199 -113 435 149 0 0 chr4 52659429 52659496 -131629166 + AluSx SINE Alu 239 305 -6 192 209 0 0 chr4 52659575 52659618 -131629044 - L2 LINE L2 0 3313 3271 2199 120 0 0 chr4 52659751 52660043 -131628619 + AluSx SINE Alu 1 292 -20 1233 81 0 0 chr4 52660071 52660220 -131628442 + AluSc SINE Alu 1 149 -160 1081 98 0 0 chr4 52660278 52660421 -131628241 - L1PB1 LINE L1 -2 6149 6007 226 343 151 38 chr4 52661164 52661508 -131627154 + L2 LINE L2 2886 3268 -4 896 211 15 35 chr4 52661580 52661779 -131626883 + MIR SINE MIR 60 254 -8 647 184 74 25 chr4 52661833 52661996 -131626666 + LTR16A1 LTR ERVL 61 231 -226 570 191 157 14 chr4 52662048 52662258 -131626404 + LTR16A1 LTR ERVL 201 440 -17 323 164 0 10 chr4 52663420 52663490 -131625172 + AluJo SINE Alu 1 46 -256 2349 83 3 40 chr4 52664605 52664929 -131623733 - AluSx SINE Alu 0 312 1 1502 179 0 16 chr4 52665213 52665470 -131623192 + AluJo SINE Alu 44 296 -16 312 253 115 17 chr4 52665495 52665669 -131622993 - L1ME4a LINE L1 -78 6043 5853 2195 125 0 6 chr4 52665997 52666310 -131622352 - AluJo SINE Alu -1 311 1 345 261 150 13 chr4 52666820 52666973 -131621689 - MIR SINE MIR -79 183 10 340 239 35 18 chr4 52667185 52667298 -131621364 - MER69 DNA AcHobo 0 2526 2412 942 147 0 20 chr4 52667298 52667448 -131621214 + AluJo SINE Alu 1 147 -165 1106 158 0 0 chr4 52667678 52667849 -131620813 - AluJo SINE Alu -141 171 1 580 153 227 25 chr4 52667855 52668018 -131620644 - MER69 DNA AcHobo -150 2376 2181 * 3424 249 81 21 chr4 52667999 52669009 -131619653 - MER69 DNA AcHobo -1431 1095 25 7941 35 1 1 chr4 52670029 52671499 -131617163 + L1PA4 LINE L1 4686 6155 0 2089 112 11 0 chr4 52672553 52672852 -131615810 - AluSx SINE Alu 0 305 4 37 23 0 0 chr4 52672855 52672899 -131615763 + AT_rich Low_complexity Low_complexity 1 44 0 1993 143 7 3 chr4 52673437 52673730 -131614932 - AluSx SINE Alu -18 294 1 276 358 18 9 chr4 52673781 52673890 -131614772 + L2 LINE L2 3144 3253 -19 2223 108 0 0 chr4 52674703 52674989 -131613673 + AluSq SINE Alu 1 286 -27 7982 73 3 2 chr4 52674989 52676774 -131611888 + L1PA7 LINE L1 4355 6154 0 4094 126 37 20 chr4 52676774 52677494 -131611168 + L1P4 LINE L1 4635 5384 -777 1763 153 50 0 chr4 52677494 52677776 -131610886 + AluSx SINE Alu 1 296 -16 4094 126 37 20 chr4 52677776 52678184 -131610478 + L1P4 LINE L1 5384 5784 -377 310 579 11 11 chr4 52678347 52678584 -131610078 + polypurine Low_complexity Low_complexity 1 237 0 312 304 66 107 chr4 52678913 52679202 -131609460 + L2 LINE L2 2941 3217 -55 2248 105 10 13 chr4 52679378 52679683 -131608979 + AluSq SINE Alu 1 304 -9 2295 104 0 0 chr4 52680075 52680363 -131608299 - AluSx SINE Alu -20 292 5 473 232 0 10 chr4 52680962 52681061 -131607601 + MER5A DNA MER1_type 9 106 -83 941 281 88 38 chr4 52681449 52681848 -131606814 - MLT1H LTR MaLR -4 545 127 415 282 171 6 chr4 52681886 52682056 -131606606 + MIR SINE MIR 65 262 0 2543 139 8 8 chr4 52682086 52682461 -131606201 - THE1C LTR MaLR 0 375 1 252 0 0 0 chr4 52682580 52682608 -131606054 + (TG)n Simple_repeat Simple_repeat 2 29 0 370 57 19 0 chr4 52682648 52682701 -131605961 + L1P4 LINE L1 5423 5476 -690 417 162 0 0 chr4 52682701 52682769 -131605893 - Alu SINE Alu -11 301 234 4530 139 16 4 chr4 52682773 52683483 -131605179 + L1PA16 LINE L1 5449 6166 0 260 125 0 0 chr4 52683483 52683523 -131605139 + L1MB5 LINE L1 6127 6166 -8 24 0 0 0 chr4 52683523 52683547 -131605115 + AT_rich Low_complexity Low_complexity 1 24 0 347 232 50 10 chr4 52683685 52683784 -131604878 + MER5A DNA MER1_type 10 112 -77 28 0 0 0 chr4 52685006 52685034 -131603628 + AT_rich Low_complexity Low_complexity 1 28 0 6844 38 2 9 chr4 52685872 52686603 -131602059 - L1P LINE L1 -2120 4026 3300 1401 26 0 0 chr4 52686603 52686757 -131601905 - L1PA3 LINE L1 -1 6154 6001 6844 38 2 9 chr4 52686757 52686866 -131601796 - L1P LINE L1 -2846 3300 3192 * 11252 40 9 1 chr4 52686858 52688575 -131600087 + L1P2 LINE L1 4034 5761 -393 265 167 26 0 chr4 52688687 52688765 -131599897 + (TA)n Simple_repeat Simple_repeat 2 81 0 1174 133 0 0 chr4 52688780 52688945 -131599717 - AluSp SINE Alu -12 301 137 1127 98 12 37 chr4 52688992 52689156 -131599506 - AluSg/x SINE Alu -15 297 138 197 281 0 81 chr4 52689211 52689352 -131599310 - MIR SINE MIR -3 205 79 452 220 11 0 chr4 52689536 52689627 -131599035 - L2 LINE L2 0 3272 3181 197 312 18 55 chr4 52689654 52689725 -131598937 - MIR SINE MIR 0 262 195 2192 123 0 3 chr4 52689725 52690033 -131598629 - AluSx SINE Alu -5 307 1 197 312 18 55 chr4 52690033 52690070 -131598592 - MIR SINE MIR -67 195 158 2486 30 26 0 chr4 52690368 52690672 -131597990 + SVA Other Other 12 323 -1063 334 209 151 14 chr4 52690683 52690822 -131597840 + L1ME1 LINE L1 2380 2537 -3609 277 282 68 26 chr4 52690839 52690956 -131597706 - L1ME LINE L1 -574 5592 5471 2154 119 138 8 chr4 52690962 52691331 -131597331 + MSTA LTR MaLR 12 428 0 8029 241 76 15 chr4 52691331 52692235 -131596427 - L1ME LINE L1 -686 5480 4632 2083 129 3 3 chr4 52692235 52692529 -131596133 + AluSp SINE Alu 2 295 -18 8029 241 76 15 chr4 52692529 52694393 -131594269 - L1ME LINE L1 -1534 4632 2540 1893 127 169 17 chr4 52694394 52694756 -131593906 - MSTA LTR MaLR -4 424 8 283 282 68 26 chr4 52694758 52694875 -131593787 + L1ME1 LINE L1 5471 5592 -574 1438 178 179 38 chr4 52694924 52695195 -131593467 + L1ME1 LINE L1 5593 5824 -488 1703 163 54 14 chr4 52695195 52695490 -131593172 + AluJb SINE Alu 1 307 -5 1438 178 179 38 chr4 52695490 52695725 -131592937 + L1ME1 LINE L1 5824 6312 0 1164 215 105 14 chr4 52695741 52696187 -131592475 + L1ME1 LINE L1 2705 3191 -2955 * 4014 209 67 24 chr4 52696176 52696852 -131591810 + L1ME1 LINE L1 4068 4713 -1453 900 113 0 64 chr4 52696852 52696993 -131591669 + FLAM_C SINE Alu 1 132 -1 4014 209 67 24 chr4 52696993 52698311 -131590351 + L1ME1 LINE L1 4713 6143 -23 2024 116 3 11 chr4 52698398 52698532 -131590130 + AluSq SINE Alu 2 135 -178 2243 113 3 7 chr4 52698532 52698841 -131589821 + AluSq SINE Alu 1 308 -5 2024 116 3 11 chr4 52698841 52698991 -131589671 + AluSq SINE Alu 135 284 -29 224 224 26 0 chr4 52699138 52699214 -131589448 + GA-rich Low_complexity Low_complexity 3 80 0 301 389 69 0 chr4 52699359 52699575 -131589087 + L3 LINE CR1 1019 1249 -328 352 216 186 0 chr4 52699606 52699703 -131588959 - L2 LINE L2 0 3272 3158 515 315 195 0 chr4 52699787 52699987 -131588675 + MIR SINE MIR 2 240 -22 883 114 0 0 chr4 52700282 52700405 -131588257 - FRAM SINE Alu -12 164 42 222 288 0 0 chr4 52700666 52700725 -131587937 + L2 LINE L2 3206 3264 -8 309 26 0 0 chr4 52700916 52700942 -131587720 + (TG)n Simple_repeat Simple_repeat 1 64 0 309 26 0 0 chr4 52700942 52700980 -131587682 + (TG)n Simple_repeat Simple_repeat 2 39 0 260 294 76 0 chr4 52701418 52701510 -131587152 + MIR SINE MIR 45 143 -65 1323 177 113 21 chr4 52701556 52701856 -131586806 + MLT1A2 LTR MaLR 1 335 -39 1791 187 22 22 chr4 52701856 52702220 -131586442 + MLT1A1 LTR MaLR 2 365 0 1323 177 113 21 chr4 52702220 52702247 -131586415 + MLT1A2 LTR MaLR 335 358 -16 2812 160 103 140 chr4 52702256 52702638 -131586024 - MER21B LTR ERV1 -2 861 466 195 42 0 0 chr4 52702638 52702662 -131586000 + (CATTT)n Simple_repeat Simple_repeat 2 25 0 2812 160 103 140 chr4 52702662 52702736 -131585926 - MER21B LTR ERV1 -397 466 391 1606 161 0 8 chr4 52702736 52702984 -131585678 - AluJb SINE Alu -66 246 1 2812 160 103 140 chr4 52702984 52703420 -131585242 - MER21B LTR ERV1 -472 391 1 180 111 0 0 chr4 52703454 52703481 -131585181 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 892 298 33 61 chr4 52703481 52703957 -131584705 - L2 LINE L2 -13 3259 2794 2193 100 3 7 chr4 52704029 52704376 -131584286 - AluSq SINE Alu 0 313 1 339 345 18 0 chr4 52704471 52704584 -131584078 + MLT1K LTR MaLR 47 161 -427 472 206 73 67 chr4 52704849 52705014 -131583648 + MER46A DNA MER2_type 2 167 -69 851 249 18 52 chr4 52705014 52705243 -131583419 - MIR SINE MIR -40 222 2 258 273 0 0 chr4 52705285 52705340 -131583322 + L2 LINE L2 3243 3297 -16 1043 80 0 0 chr4 52705346 52705471 -131583191 + AluSg SINE Alu 1 125 -185 2256 76 7 33 chr4 52705666 52705969 -131582693 + AluY SINE Alu 1 295 -16 497 316 15 56 chr4 52706350 52706446 -131582216 - L3 LINE CR1 -239 1338 1240 2201 94 14 0 chr4 52706446 52706733 -131581929 + AluY SINE Alu 3 293 -18 497 316 15 56 chr4 52706733 52706902 -131581760 - L3 LINE CR1 -337 1240 1084 2095 210 126 10 chr4 52706925 52707411 -131581251 + MLT1F LTR MaLR 1 542 0 2187 95 0 14 chr4 52707529 52707823 -131580839 + AluSc SINE Alu 1 290 -19 345 24 0 0 chr4 52708244 52708286 -131580376 + (CA)n Simple_repeat Simple_repeat 2 43 0 1961 153 10 13 chr4 52708480 52708793 -131579869 + AluJb SINE Alu 1 312 0 2042 130 23 0 chr4 52709202 52709501 -131579161 - AluSx SINE Alu -6 306 1 1656 175 24 24 chr4 52709659 52709951 -131578711 + AluJo SINE Alu 1 292 -20 32 0 0 0 chr4 52709951 52709983 -131578679 + AT_rich Low_complexity Low_complexity 1 32 0 724 211 0 0 chr4 52710460 52710588 -131578074 + AluJb SINE Alu 150 277 -35 201 74 0 0 chr4 52710591 52710618 -131578044 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 223 158 26 0 chr4 52710649 52710687 -131577975 + L3 LINE CR1 1527 1565 -12 2357 74 17 0 chr4 52712089 52712388 -131576274 - AluY SINE Alu -7 304 1 2146 122 7 0 chr4 52714933 52715229 -131573433 + AluSx SINE Alu 1 298 -14 22 0 0 0 chr4 52715558 52715580 -131573082 + AT_rich Low_complexity Low_complexity 1 22 0 1826 110 11 4 chr4 52717585 52717848 -131570814 + AluSx SINE Alu 36 300 -12 293 164 66 33 chr4 52718873 52718934 -131569728 - MIR SINE MIR -93 169 107 281 341 45 0 chr4 52719734 52719822 -131568840 + MIR3 SINE MIR 108 199 -9 23 0 0 0 chr4 52720127 52720150 -131568512 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr4 52720304 52720334 -131568328 + AT_rich Low_complexity Low_complexity 1 30 0 489 213 41 25 chr4 52720427 52720549 -131568113 - FLAM_A SINE Alu -9 124 1 21 36 0 0 chr4 52720716 52720744 -131567918 + AT_rich Low_complexity Low_complexity 1 28 0 252 0 0 0 chr4 52726127 52726155 -131562507 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 21 36 0 0 chr4 52727379 52727407 -131561255 + AT_rich Low_complexity Low_complexity 1 28 0 22 88 0 0 chr4 52728194 52728251 -131560411 + AT_rich Low_complexity Low_complexity 1 57 0 1340 192 97 56 chr4 52728387 52728819 -131559843 + LTR7 LTR ERV1 1 450 0 1175 177 23 12 chr4 52728819 52729224 -131559438 + HERVH LTR ERV1 1 446 -7267 5105 131 30 15 chr4 52729299 52730210 -131558452 + HERVH LTR ERV1 793 1716 -5997 2716 127 2 0 chr4 52730326 52730743 -131557919 + L1PA13 LINE L1 5745 6162 -1 630 181 160 0 chr4 52730743 52730887 -131557775 + MIR SINE MIR 22 188 -74 766 251 26 15 chr4 52731109 52731304 -131557358 - MIR SINE MIR -38 224 28 2101 104 15 70 chr4 52731481 52731809 -131556853 + AluSx SINE Alu 1 310 -2 619 262 100 22 chr4 52732942 52733171 -131555491 - MLT1I LTR MaLR 0 409 163 256 300 38 0 chr4 52733211 52733291 -131555371 - MLT1I LTR MaLR -324 85 3 2161 130 0 0 chr4 52733769 52734061 -131554601 - AluSx SINE Alu -17 295 4 306 0 0 0 chr4 52734088 52734122 -131554540 + (TG)n Simple_repeat Simple_repeat 2 35 0 4228 144 108 25 chr4 52734122 52734963 -131553699 + MER21A LTR ERV1 21 931 0 630 271 85 25 chr4 52735149 52735430 -131553232 - LTR16C LTR ERVL -4 487 190 595 275 59 20 chr4 52735522 52735901 -131552761 + LTR16B LTR ERVL 2 462 -2 1156 189 61 94 chr4 52735975 52736370 -131552292 + MLT2D LTR ERVL 1 479 -41 29 47 0 0 chr4 52736370 52736413 -131552249 + AT_rich Low_complexity Low_complexity 1 43 0 356 250 9 9 chr4 52736475 52736591 -131552071 - ALR/Alpha Satellite centromeric -43 129 14 4861 127 8 8 chr4 52736729 52737554 -131551108 + HERVH LTR ERV1 2004 2828 -4885 4124 142 8 14 chr4 52737552 52738818 -131549844 + HERVH LTR ERV1 3354 4552 -2287 * 1457 165 0 0 chr4 52738808 52739069 -131549593 + HERVH LTR ERV1 5756 6016 -1697 * 3610 102 3 16 chr4 52739059 52739626 -131549036 + HERVH LTR ERV1 7154 7713 0 1394 167 105 58 chr4 52739626 52740056 -131548606 + LTR7 LTR ERV1 1 450 0 1956 136 24 10 chr4 52740086 52740380 -131548282 + AluJb SINE Alu 1 298 -14 458 333 72 8 chr4 52740473 52740710 -131547952 - MIR SINE MIR -6 256 5 2048 129 7 0 chr4 52740761 52741041 -131547621 + AluSx SINE Alu 13 294 -18 396 276 72 20 chr4 52741546 52741698 -131546964 + L1ME LINE L1 740 899 -5171 21 0 0 0 chr4 52742807 52742828 -131545834 + AT_rich Low_complexity Low_complexity 1 21 0 321 342 128 15 chr4 52742860 52743056 -131545606 + MIR SINE MIR 20 237 -25 200 267 47 58 chr4 52743082 52743168 -131545494 + MIR SINE MIR 152 236 -26 2184 112 3 3 chr4 52743352 52743655 -131545007 + AluSc SINE Alu 1 303 -6 318 195 0 0 chr4 52744408 52744490 -131544172 + (TGGA)n Simple_repeat Simple_repeat 4 85 0 224 340 80 38 chr4 52744496 52744758 -131543904 - L2 LINE L2 -181 3091 2819 336 296 174 24 chr4 52744912 52745125 -131543537 + L2 LINE L2 3027 3271 -42 2152 144 0 0 chr4 52745166 52745471 -131543191 + AluSx SINE Alu 1 305 -7 589 250 116 31 chr4 52745478 52745678 -131542984 + MIR SINE MIR 44 262 0 980 230 0 36 chr4 52746013 52746235 -131542427 + AluJo SINE Alu 5 218 -94 2352 123 8 25 chr4 52746235 52746593 -131542069 - THE1B LTR MaLR -4 360 9 1146 103 0 0 chr4 52747040 52747185 -131541477 - AluSq/x SINE Alu -168 145 1 197 379 142 5 chr4 52747185 52747396 -131541266 - L2 LINE L2 -712 2602 2363 244 333 142 16 chr4 52747560 52747743 -131540919 + MIR SINE MIR 17 222 -40 295 268 31 24 chr4 52748120 52748247 -131540415 - L1ME4a LINE L1 -23 6098 5971 459 52 0 0 chr4 52748760 52748818 -131539844 + (CA)n Simple_repeat Simple_repeat 2 59 0 2215 112 7 0 chr4 52749036 52749340 -131539322 + AluSx SINE Alu 1 306 -6 423 0 0 0 chr4 52750157 52750204 -131538458 + (TAAAA)n Simple_repeat Simple_repeat 4 50 0 203 79 26 0 chr4 52750217 52750255 -131538407 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 679 95 0 69 chr4 52750905 52751003 -131537659 + AluSq/x SINE Alu 2 92 -220 1660 105 109 8 chr4 52751003 52751250 -131537412 + AluSx SINE Alu 31 302 -10 679 95 0 69 chr4 52751250 52751267 -131537395 + AluSq/x SINE Alu 92 109 -203 310 318 81 0 chr4 52751512 52751660 -131537002 + MIR SINE MIR 29 188 -74 1037 260 53 78 chr4 52751666 52752188 -131536474 - L2 LINE L2 -3 3310 2779 1969 221 136 50 chr4 52752293 52753034 -131535628 - L2 LINE L2 -1673 1641 837 822 280 107 30 chr4 52753119 52753419 -131535243 - MER46C DNA MER2_type -15 323 1 5441 133 42 5 chr4 52753579 52754411 -131534251 + Tigger4(Zombi) DNA MER2_type 2 864 -1867 599 149 0 11 chr4 52754511 52754598 -131534064 + FLAM_C SINE Alu 33 118 -25 23 0 0 0 chr4 52754601 52754624 -131534038 + AT_rich Low_complexity Low_complexity 1 23 0 183 42 0 0 chr4 52755379 52755403 -131533259 + (TG)n Simple_repeat Simple_repeat 1 24 0 21 57 0 0 chr4 52755726 52755761 -131532901 + AT_rich Low_complexity Low_complexity 1 35 0 1435 159 148 8 chr4 52756800 52757057 -131531605 + AluJo SINE Alu 2 294 -8 470 188 256 45 chr4 52757071 52757204 -131531458 + FRAM SINE Alu 1 161 -5 234 0 0 0 chr4 52758072 52758098 -131530564 + (A)n Simple_repeat Simple_repeat 1 26 0 2478 139 94 10 chr4 52758317 52758712 -131529950 - MSTA LTR MaLR 0 428 1 1920 151 23 0 chr4 52759446 52759751 -131528911 - AluJb SINE Alu 0 312 1 277 281 77 88 chr4 52759793 52760067 -131528595 - L1MC/D LINE L1 -2026 5782 5512 238 281 43 127 chr4 52760743 52761468 -131527194 - L1MC/D LINE L1 -1488 4658 3995 354 330 49 7 chr4 52761631 52761769 -131526893 + MIR3 SINE MIR 35 183 -25 1496 162 17 0 chr4 52761879 52762114 -131526548 + AluJb SINE Alu 1 239 -73 336 190 89 0 chr4 52762119 52762198 -131526464 + AluSg/x SINE Alu 211 296 -4 334 283 108 18 chr4 52762297 52762463 -131526199 - MIR SINE MIR 0 262 82 322 288 54 0 chr4 52762857 52762968 -131525694 + LTR67 LTR ERVL 433 549 -8 421 250 33 17 chr4 52763054 52763174 -131525488 + MIR SINE MIR 31 152 -56 1507 224 87 19 chr4 52764521 52764887 -131523775 - MER82 DNA MER2_type -2 651 261 305 301 149 40 chr4 52765131 52765427 -131523235 + L2 LINE L2 2442 2769 -545 189 216 39 20 chr4 52765780 52765831 -131522831 + L2 LINE L2 3216 3267 -5 1638 175 0 62 chr4 52766237 52766562 -131522100 + AluSx SINE Alu 1 305 -7 227 310 88 9 chr4 52767674 52767787 -131520875 - L2 LINE L2 -1 3312 3191 307 237 40 106 chr4 52768061 52768259 -131520403 - L2 LINE L2 -73 3240 3056 960 248 74 26 chr4 52770242 52770553 -131518109 - L2 LINE L2 -590 2724 2399 198 374 11 11 chr4 52770696 52770787 -131517875 + MIR3 SINE MIR 102 192 -16 416 133 0 17 chr4 52770915 52770975 -131517687 + FRAM SINE Alu 58 116 -60 231 114 0 0 chr4 52770975 52771010 -131517652 + (TA)n Simple_repeat Simple_repeat 1 35 0 1361 157 99 27 chr4 52771442 52771736 -131516926 + MER46B DNA MER2_type 47 236 0 30 0 0 0 chr4 52771750 52771780 -131516882 + AT_rich Low_complexity Low_complexity 1 30 0 1963 147 7 0 chr4 52771780 52772065 -131516597 - AluSx SINE Alu -25 287 1 379 276 19 0 chr4 52772193 52772298 -131516364 - MIR SINE MIR -16 246 140 200 325 48 0 chr4 52772569 52772652 -131516010 + L2 LINE L2 3185 3271 -1 1091 50 14 21 chr4 52773139 52773280 -131515382 + L1PB1 LINE L1 6012 6151 0 296 254 151 8 chr4 52773982 52774108 -131514554 + MIR3 SINE MIR 3 146 -62 381 281 8 33 chr4 52774110 52774231 -131514431 - L2 LINE L2 -2 3270 3153 202 210 309 0 chr4 52774289 52774370 -131514292 - L2 LINE L2 -1 3312 3207 477 210 59 17 chr4 52774459 52774578 -131514084 + MIR SINE MIR 138 261 -1 496 275 21 42 chr4 52774608 52774801 -131513861 + MIR SINE MIR 63 251 -11 222 248 228 10 chr4 52775254 52775355 -131513307 - MIR SINE MIR -20 242 120 250 244 26 26 chr4 52775444 52775522 -131513140 + L2 LINE L2 2956 3033 -239 213 65 0 0 chr4 52778130 52778161 -131510501 + (A)n Simple_repeat Simple_repeat 1 31 0 3816 55 2 7 chr4 52778839 52779292 -131509370 + L1PA5 LINE L1 5704 6154 0 230 329 89 36 chr4 52779396 52779621 -131509041 + L2 LINE L2 3077 3313 0 1844 152 3 3 chr4 52779750 52780065 -131508597 + AluJb SINE Alu 1 315 0 442 335 30 0 chr4 52780244 52780411 -131508251 - MIR SINE MIR -15 247 76 206 294 17 92 chr4 52780604 52780723 -131507939 - L2 LINE L2 -21 3292 3183 1150 168 62 164 chr4 52782530 52782946 -131505716 - MLT1A2 LTR MaLR 0 374 1 187 286 32 48 chr4 52784339 52784402 -131504260 - MIR3 SINE MIR -32 176 115 448 251 11 20 chr4 52785437 52785616 -131503046 - MIR SINE MIR -4 258 30 972 223 5 28 chr4 52785667 52785878 -131502784 - MER3 DNA MER1_type -3 206 1 186 103 0 0 chr4 52786141 52786170 -131502492 + (CA)n Simple_repeat Simple_repeat 2 30 0 25 0 0 0 chr4 52786983 52787008 -131501654 + AT_rich Low_complexity Low_complexity 1 25 0 2123 115 3 37 chr4 52787017 52787339 -131501323 + AluSx SINE Alu 1 311 -1 297 0 0 0 chr4 52787346 52787379 -131501283 + (CA)n Simple_repeat Simple_repeat 2 34 0 2314 91 0 0 chr4 52788784 52789082 -131499580 + AluSx SINE Alu 1 298 -14 997 197 16 0 chr4 52789573 52789761 -131498901 + MER82 DNA MER2_type 1 191 -462 1552 114 31 9 chr4 52789761 52789988 -131498674 - AluSc SINE Alu -16 293 62 694 226 53 53 chr4 52790207 52790433 -131498229 + Charlie4 DNA MER1_type 4 229 -1732 674 150 81 120 chr4 52790426 52790660 -131498002 + Charlie4 DNA MER1_type 1737 1961 0 * 1601 52 5 10 chr4 52790665 52790859 -131497803 + L1PA7 LINE L1 5962 6154 0 686 164 45 0 chr4 52791865 52791975 -131496687 + AluJo/FLAM SINE Alu 2 116 -196 2415 89 0 0 chr4 52791975 52792279 -131496383 + AluY SINE Alu 1 304 -7 30437 29 2 0 chr4 52792283 52796647 -131492015 + L1PA4 LINE L1 1782 6154 -1 68 48 0 0 chr4 52796660 52796763 -131491899 + AT_rich Low_complexity Low_complexity 1 103 0 2217 122 0 3 chr4 52796822 52797125 -131491537 - AluSq SINE Alu -11 302 1 280 270 122 0 chr4 52797171 52797286 -131491376 - L1ME4a LINE L1 -2 6119 5991 336 311 90 0 chr4 52797326 52797512 -131491150 - MIR SINE MIR -2 260 51 23 0 0 0 chr4 52797579 52797602 -131491060 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr4 52797757 52797782 -131490880 + AT_rich Low_complexity Low_complexity 1 25 0 205 325 0 39 chr4 52798565 52798642 -131490020 + GA-rich Low_complexity Low_complexity 2 75 0 1190 90 104 14 chr4 52799382 52799593 -131489069 + MER7A DNA MER2_type 1 228 -118 1878 132 16 19 chr4 52799753 52800064 -131488598 + AluSx SINE Alu 3 312 0 3449 136 51 120 chr4 52800094 52801301 -131487361 + L1MA9 LINE L1 5004 6293 0 2028 128 38 3 chr4 52801301 52801589 -131487073 + AluSx SINE Alu 1 298 -14 3449 136 51 120 chr4 52801589 52801760 -131486902 + L1MA9 LINE L1 6293 6233 -60 342 0 0 0 chr4 52801760 52801798 -131486864 + (TA)n Simple_repeat Simple_repeat 1 38 0 3449 136 51 120 chr4 52801798 52801854 -131486808 + L1MA9 LINE L1 6232 6290 -3 437 273 64 86 chr4 52801902 52801968 -131486694 + MIR SINE MIR 47 113 -149 886 159 0 0 chr4 52801968 52802100 -131486562 - FLAM_A SINE Alu -1 132 1 437 273 64 86 chr4 52802100 52802253 -131486409 + MIR SINE MIR 113 261 -1 820 150 0 0 chr4 52802524 52802673 -131485989 - FLAM_C SINE Alu 0 149 1 189 250 42 0 chr4 52803721 52803769 -131484893 + L2 LINE L2 2176 2225 -1089 251 217 0 17 chr4 52803791 52803851 -131484811 + CT-rich Low_complexity Low_complexity 4 62 0 10211 120 37 53 chr4 52804039 52804196 -131484466 + Tigger4(Zombi) DNA MER2_type 762 920 -1811 1527 169 19 47 chr4 52804196 52804515 -131484147 + AluJo SINE Alu 1 310 -2 10211 120 37 53 chr4 52804515 52805397 -131483265 + Tigger4(Zombi) DNA MER2_type 920 1815 -916 2002 121 0 3 chr4 52805397 52805706 -131482956 - AluSg SINE Alu 0 308 1 1828 112 58 22 chr4 52805716 52805993 -131482669 - AluSx SINE Alu -25 287 1 10211 120 37 53 chr4 52805993 52806004 -131482658 + Tigger4(Zombi) DNA MER2_type 1824 1834 -897 1858 168 0 0 chr4 52806004 52806301 -131482361 - AluJb SINE Alu -15 297 1 10211 120 37 53 chr4 52806301 52807206 -131481456 + Tigger4(Zombi) DNA MER2_type 1834 2699 -32 492 348 152 26 chr4 52807308 52807728 -131480934 - L2 LINE L2 -37 3276 2804 1309 266 161 29 chr4 52807859 52808621 -131480041 - L2 LINE L2 -812 2502 1640 712 291 83 38 chr4 52808623 52808936 -131479726 - L2 LINE L2 -1960 1354 1028 273 317 50 0 chr4 52809038 52809139 -131479523 + MIR SINE MIR 151 256 -6 356 269 126 29 chr4 52809176 52809351 -131479311 - L2 LINE L2 -1 3312 3121 412 287 71 32 chr4 52809662 52809708 -131478954 - MIR SINE MIR -11 251 208 1533 207 138 18 chr4 52809708 52810216 -131478446 + MER90 LTR ERV1 3 571 -4 412 287 71 32 chr4 52810216 52810382 -131478280 - MIR SINE MIR -54 208 39 2034 120 20 0 chr4 52810660 52810952 -131477710 - AluSx SINE Alu -13 299 2 24 67 0 0 chr4 52811371 52811416 -131477246 + AT_rich Low_complexity Low_complexity 1 45 0 526 285 88 60 chr4 52811666 52811985 -131476677 - L2 LINE L2 -352 2962 2635 677 178 0 25 chr4 52812011 52812129 -131476533 - FLAM_A SINE Alu -18 124 10 541 305 35 10 chr4 52812216 52812416 -131476246 - L2 LINE L2 -780 2534 2330 557 341 147 34 chr4 52814532 52814939 -131473723 + L2 LINE L2 2812 3264 -8 318 307 147 25 chr4 52815483 52815646 -131473016 - MIR SINE MIR -74 188 6 477 50 0 0 chr4 52815753 52815813 -131472849 + (CA)n Simple_repeat Simple_repeat 1 60 0 25 0 0 0 chr4 52816045 52816070 -131472592 + AT_rich Low_complexity Low_complexity 1 25 0 1314 213 6 69 chr4 52816461 52816794 -131471868 + AluJb SINE Alu 1 312 0 217 345 124 0 chr4 52817110 52817223 -131471439 - L2 LINE L2 -1 3312 3186 338 275 67 0 chr4 52819315 52819435 -131469227 - MIR SINE MIR 0 262 135 458 234 57 51 chr4 52819615 52819659 -131469003 - MER5B DNA MER1_type -1 177 135 270 0 0 0 chr4 52819659 52819689 -131468973 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 458 234 57 51 chr4 52819689 52819819 -131468843 - MER5B DNA MER1_type -43 135 2 180 0 0 0 chr4 52820904 52820924 -131467738 + (TTG)n Simple_repeat Simple_repeat 3 22 0 291 167 0 0 chr4 52822003 52822069 -131466593 + (CGGG)n Simple_repeat Simple_repeat 1 66 0 25 31 0 0 chr4 52822132 52822164 -131466498 + GC_rich Low_complexity Low_complexity 1 32 0 264 267 0 0 chr4 52822769 52822829 -131465833 + GA-rich Low_complexity Low_complexity 1 60 0 391 312 157 34 chr4 52823009 52823422 -131465240 + L2 LINE L2 729 1192 -2122 208 331 60 53 chr4 52823765 52824049 -131464613 + L2 LINE L2 1609 1894 -1420 26 0 0 0 chr4 52824763 52824789 -131463873 + AT_rich Low_complexity Low_complexity 1 26 0 272 271 128 32 chr4 52824818 52825099 -131463563 + L1ME LINE L1 5525 5832 -289 293 234 8 97 chr4 52825270 52825340 -131463322 + L1ME LINE L1 5548 5604 -517 2268 101 7 3 chr4 52825340 52825646 -131463016 + AluSq SINE Alu 1 307 -6 293 234 8 97 chr4 52825646 52825699 -131462963 + L1ME LINE L1 5604 5660 -461 1423 178 0 17 chr4 52825854 52826084 -131462578 - AluJo SINE Alu -63 249 24 311 247 12 12 chr4 52828830 52828915 -131459747 - MIR SINE MIR -49 213 129 31 26 0 0 chr4 52929060 52929098 -131359564 + AT_rich Low_complexity Low_complexity 1 38 0 760 343 84 18 chr4 52930463 52930845 -131357817 + L3 LINE CR1 330 736 -841 14177 44 17 1 chr4 52930861 52933369 -131355293 + L1PA6 LINE L1 3562 6110 -44 11824 191 13 12 chr4 52933471 52937104 -131351558 + HERVE LTR ERV1 525 4218 -3595 * 13392 206 2 6 chr4 52937102 52939736 -131348926 + HERVE LTR ERV1 4787 7410 -403 332 82 0 0 chr4 52939857 52939906 -131348756 + (TA)n Simple_repeat Simple_repeat 1 49 0 1695 138 115 37 chr4 52940056 52940404 -131348258 - THE1C LTR MaLR 0 375 1 260 319 140 25 chr4 52940614 52940893 -131347769 + MLT1H LTR MaLR 43 353 -196 4397 194 29 0 chr4 52941269 52942143 -131346519 + MST-int LTR MaLR 16 914 -737 796 144 107 74 chr4 52942145 52942360 -131346302 + MSTA LTR MaLR 203 424 -4 6041 154 43 16 chr4 52942753 52943949 -131344713 - Tigger3b DNA MER2_type -3 1228 1 1195 231 95 15 chr4 52944026 52944364 -131344298 + MLT1A1 LTR MaLR 1 365 0 203 208 19 0 chr4 52944538 52944591 -131344071 + (TA)n Simple_repeat Simple_repeat 2 55 0 216 274 255 10 chr4 52945173 52945275 -131343387 + MIR SINE MIR 28 154 -108 990 224 93 96 chr4 52946035 52946344 -131342318 + MLT1A1 LTR MaLR 27 396 0 1784 199 99 12 chr4 52947939 52948371 -131340291 + L1MC1 LINE L1 5812 6281 -52 2662 137 53 21 chr4 52948664 52949196 -131339466 - L1MA4 LINE L1 -10 6290 5742 276 336 21 43 chr4 52949204 52949344 -131339318 + L2 LINE L2 3163 3299 -14 2162 95 3 3 chr4 52949395 52949678 -131338984 + AluSp SINE Alu 1 283 -30 285 89 0 0 chr4 52949678 52949723 -131338939 + (TC)n Simple_repeat Simple_repeat 2 46 0 1598 201 90 108 chr4 52950160 52950917 -131337745 - LTR1B LTR ERV1 -81 745 3 21 36 0 0 chr4 52951457 52951485 -131337177 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr4 52952162 52952200 -131336462 + AT_rich Low_complexity Low_complexity 1 38 0 314 314 136 23 chr4 52952245 52952509 -131336153 - L1ME4a LINE L1 -107 6014 5721 231 218 0 0 chr4 52952697 52952752 -131335910 + (TG)n Simple_repeat Simple_repeat 2 56 0 265 266 25 13 chr4 52953119 52953198 -131335464 - LTR67 LTR ERVL 0 557 478 1925 121 9 29 chr4 52955015 52955330 -131333332 + AluSx SINE Alu 1 309 -3 1173 273 79 4 chr4 52955681 52956164 -131332498 + Charlie1b DNA MER1_type 4 522 -1 186 133 0 0 chr4 52957666 52957696 -131330966 + (TATG)n Simple_repeat Simple_repeat 3 32 0 2142 147 34 6 chr4 52958903 52959257 -131329405 + THE1B LTR MaLR 1 364 0 10710 115 17 1 chr4 52959264 52960806 -131327856 + THE1B-int LTR MaLR 14 1580 0 1989 163 31 14 chr4 52960808 52961164 -131327498 + THE1B LTR MaLR 3 364 0 187 381 95 48 chr4 52962640 52962829 -131325833 - L2 LINE L2 0 3272 3075 506 282 17 44 chr4 52963501 52963682 -131324980 - MER5B DNA MER1_type -2 176 1 230 286 0 0 chr4 52963715 52963771 -131324891 + MIR SINE MIR 17 72 -190 212 322 217 18 chr4 52964026 52964358 -131324304 - L2 LINE L2 -1156 2158 1761 185 340 62 21 chr4 52964668 52964765 -131323897 + L2 LINE L2 3208 3308 -5 25 0 0 0 chr4 52965203 52965228 -131323434 + AT_rich Low_complexity Low_complexity 1 25 0 2025 126 3 0 chr4 52965228 52965514 -131323148 - AluSq SINE Alu -26 287 1 2134 105 3 7 chr4 52966604 52966908 -131321754 + AluSg SINE Alu 1 303 -7 1302 165 55 7 chr4 52966979 52967251 -131321411 - L1MB4 LINE L1 0 6180 5896 189 322 88 41 chr4 52967507 52967678 -131320984 + L3 LINE CR1 1101 1279 -298 463 337 49 12 chr4 52968674 52968917 -131319745 + MLT1I LTR MaLR 158 409 0 2212 176 26 58 chr4 52968943 52969476 -131319186 - L1MA10 LINE L1 -2 6332 5817 336 247 71 0 chr4 52969476 52969561 -131319101 + 5S rRNA rRNA 1 91 -30 2178 72 3 66 chr4 52969577 52969909 -131318753 - AluY SINE Alu 0 311 1 2039 149 19 35 chr4 52971284 52971654 -131317008 - THE1B LTR MaLR 0 364 1 5357 106 6 1 chr4 52971662 52973050 -131315612 - THE1B-int LTR MaLR -78 1502 1 2010 148 22 22 chr4 52973050 52973414 -131315248 - THE1B LTR MaLR 0 364 1 196 351 61 26 chr4 52974474 52974588 -131314074 + L3b LINE CR1 1124 1241 -342 267 301 118 11 chr4 52975727 52975820 -131312842 - MIR3 SINE MIR -46 162 60 250 303 134 8 chr4 52975961 52976080 -131312582 + MIR3 SINE MIR 4 137 -71 23 78 0 0 chr4 52976396 52976447 -131312215 + AT_rich Low_complexity Low_complexity 1 51 0 350 317 102 32 chr4 52977241 52977487 -131311175 - L2 LINE L2 -31 3282 3020 1096 257 30 79 chr4 52977987 52978492 -131310170 + MLT2B1 LTR ERVL 1 480 -40 236 162 0 0 chr4 52978600 52978637 -131310025 + MLT2B1 LTR ERVL 479 515 0 41 58 0 0 chr4 52978713 52978782 -131309880 + AT_rich Low_complexity Low_complexity 1 69 0 378 264 128 24 chr4 52978822 52978947 -131309715 - L2 LINE L2 0 3313 3176 521 335 31 42 chr4 52978985 52979245 -131309417 + LTR33A LTR ERVL 6 262 -261 712 287 73 36 chr4 52979260 52979709 -131308953 + L1ME3 LINE L1 5417 5882 -280 307 277 5 33 chr4 52979725 52979909 -131308753 + (TA)n Simple_repeat Simple_repeat 2 180 0 1999 115 0 0 chr4 52980171 52980441 -131308221 + AluSq SINE Alu 33 302 -11 446 109 0 0 chr4 52980605 52980669 -131307993 - MADE1 DNA Mariner 0 80 17 499 306 72 18 chr4 52981360 52981582 -131307080 - MIR SINE MIR -27 235 2 612 233 6 6 chr4 52982034 52982197 -131306465 - L1MC4a LINE L1 -465 7343 7181 454 267 33 0 chr4 52982226 52982346 -131306316 - L1MC4 LINE L1 -1109 6933 6810 33 0 0 0 chr4 52985139 52985172 -131303490 + AT_rich Low_complexity Low_complexity 1 33 0 29 0 0 0 chr4 52986773 52986802 -131301860 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4 52987616 52987639 -131301023 + AT_rich Low_complexity Low_complexity 1 23 0 193 349 45 0 chr4 52990097 52990163 -131298499 - L2 LINE L2 0 3272 3204 22 56 0 0 chr4 52990807 52990843 -131297819 + AT_rich Low_complexity Low_complexity 1 36 0 399 353 34 29 chr4 52991313 52991551 -131297111 - MIR SINE MIR -3 259 21 202 308 179 26 chr4 52992171 52992327 -131296335 + MIR SINE MIR 58 237 -25 485 273 97 34 chr4 52994553 52994820 -131293842 + Charlie7 DNA MER1_type 254 537 -2075 465 249 42 11 chr4 52994987 52995176 -131293486 + Charlie7 DNA MER1_type 2416 2610 -2 205 191 24 0 chr4 52995566 52995608 -131293054 + CT-rich Low_complexity Low_complexity 2 44 0 1928 271 31 7 chr4 52996049 52996666 -131291996 - L1 LINE L1 -3002 3144 2513 2480 27 17 0 chr4 52996667 52996968 -131291694 - AluYb8 SINE Alu -12 306 1 1295 197 46 23 chr4 52997112 52997463 -131291199 - L1MB4 LINE L1 -306 5874 5516 288 77 0 0 chr4 52997639 52997678 -131290984 + (TC)n Simple_repeat Simple_repeat 1 39 0 827 193 13 13 chr4 52997701 52997851 -131290811 + FRAM SINE Alu 1 150 -26 578 206 31 99 chr4 52998353 52998576 -131290086 + MER3 DNA MER1_type 1 208 -1 21 0 0 0 chr4 52999405 52999426 -131289236 + AT_rich Low_complexity Low_complexity 1 21 0 2329 109 0 0 chr4 53000123 53000435 -131288227 + AluSx SINE Alu 1 312 0 326 241 65 29 chr4 53000686 53000856 -131287806 + L1M3 LINE L1 5259 5434 -737 378 134 47 52 chr4 53001187 53001359 -131287303 + (TA)n Simple_repeat Simple_repeat 1 171 0 185 250 50 80 chr4 53002055 53002155 -131286507 + MER5A DNA MER1_type 45 141 -48 1669 200 58 3 chr4 53002235 53002580 -131286082 - MLT1A1 LTR MaLR 0 365 2 210 37 0 0 chr4 53002774 53002801 -131285861 + (CA)n Simple_repeat Simple_repeat 2 28 0 266 333 16 23 chr4 53003239 53003368 -131285294 - L2 LINE L2 -962 2352 2225 486 274 54 32 chr4 53004134 53004320 -131284342 + MIR SINE MIR 2 191 -71 196 302 81 23 chr4 53004368 53004454 -131284208 + MIR3 SINE MIR 82 172 -36 303 225 172 89 chr4 53006724 53006893 -131281769 + L1M2 LINE L1 541 723 -6126 203 231 0 0 chr4 53007123 53007162 -131281500 + CT-rich Low_complexity Low_complexity 3 41 0 377 54 18 0 chr4 53010536 53010592 -131278070 + (TA)n Simple_repeat Simple_repeat 1 57 0 573 217 0 0 chr4 53011243 53011372 -131277290 + (CATATA)n Simple_repeat Simple_repeat 4 132 0 229 217 0 17 chr4 53011374 53011434 -131277228 - L1MCa LINE L1 -4362 2064 2006 620 240 0 11 chr4 53011449 53011624 -131277038 + (CATATA)n Simple_repeat Simple_repeat 2 174 0 204 267 0 0 chr4 53011613 53011673 -131276989 + (CATA)n Simple_repeat Simple_repeat 2 61 0 * 587 253 0 11 chr4 53011676 53011858 -131276804 + (TA)n Simple_repeat Simple_repeat 1 180 0 226 261 45 23 chr4 53011888 53011976 -131276686 - L1MC4 LINE L1 -1339 6703 6614 233 275 0 0 chr4 53011982 53012051 -131276611 - L1MC4 LINE L1 -1338 6704 6636 4344 230 49 28 chr4 53013024 53013182 -131275480 - L1PBb LINE L1 -3763 3085 2932 207 69 0 0 chr4 53013182 53013211 -131275451 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4344 230 49 28 chr4 53013211 53014648 -131274014 - L1PBb LINE L1 -3916 2932 1347 388 387 63 36 chr4 53015000 53015506 -131273156 - L1PBb LINE L1 -6320 529 10 313 316 51 38 chr4 53016241 53016399 -131272263 - L1MC5 LINE L1 -1191 6770 6611 198 0 0 0 chr4 53016775 53016797 -131271865 + (TC)n Simple_repeat Simple_repeat 2 23 0 281 327 71 47 chr4 53017248 53017459 -131271203 + L2 LINE L2 2719 2934 -380 658 249 33 0 chr4 53017651 53017832 -131270830 - L1MA8 LINE L1 -4 6287 6101 427 223 45 0 chr4 53017833 53017945 -131270717 + L1MA8 LINE L1 6000 6116 -175 1271 199 14 5 chr4 53018711 53018932 -131269730 - L1P2 LINE L1 -678 5476 5254 666 13 0 0 chr4 53018940 53019016 -131269646 + L1PA5 LINE L1 6068 6143 -11 240 35 0 0 chr4 53019017 53019046 -131269616 + (TA)n Simple_repeat Simple_repeat 1 29 0 229 319 76 14 chr4 53019458 53019602 -131269060 - L1ME LINE L1 -207 5914 5762 255 270 0 14 chr4 53019889 53019963 -131268699 - MLT1G1 LTR MaLR -16 579 507 45 75 0 0 chr4 53020548 53020642 -131268020 + AT_rich Low_complexity Low_complexity 1 94 0 22 70 0 0 chr4 53020944 53020987 -131267675 + AT_rich Low_complexity Low_complexity 1 43 0 34 24 0 0 chr4 53021116 53021157 -131267505 + AT_rich Low_complexity Low_complexity 1 41 0 1622 258 109 46 chr4 53021554 53022697 -131265965 - L1M3c LINE L1 -4820 2217 7 648 284 63 47 chr4 53022730 53023029 -131265633 + MLT1I LTR MaLR 80 383 -26 366 23 0 0 chr4 53023529 53023572 -131265090 + (TG)n Simple_repeat Simple_repeat 1 43 0 313 300 99 70 chr4 53023685 53023858 -131264804 - MIR SINE MIR -82 126 2 267 200 107 13 chr4 53025189 53025264 -131263398 + MER103 DNA DNA 17 98 -68 23 0 0 0 chr4 53025783 53025806 -131262856 + AT_rich Low_complexity Low_complexity 1 23 0 2456 285 84 32 chr4 53026417 53027471 -131261191 + L1M3d LINE L1 2 1110 -4781 1924 188 38 2 chr4 53027474 53027873 -131260789 + L1MB1 LINE L1 4679 5091 -1055 346 253 180 57 chr4 53027881 53028126 -131260536 - LTR28 LTR ERV1 0 1020 746 1010 57 0 0 chr4 53028127 53028250 -131260412 + AluY SINE Alu 182 304 -7 1393 198 95 88 chr4 53028264 53028789 -131259873 - LTR1B LTR ERV1 -297 529 1 3717 195 16 60 chr4 53028789 53029484 -131259178 + L1MB1 LINE L1 5096 5730 -438 267 79 0 0 chr4 53029484 53029522 -131259140 + (TG)n Simple_repeat Simple_repeat 1 38 0 3717 195 16 60 chr4 53029522 53029942 -131258720 + L1MB1 LINE L1 5730 6167 -1 9351 82 27 1 chr4 53030469 53032516 -131256146 + L1PA7 LINE L1 4092 6154 0 741 245 25 0 chr4 53032671 53032830 -131255832 - FRAM SINE Alu -13 163 1 2030 135 0 0 chr4 53033971 53034260 -131254402 + AluSx SINE Alu 1 289 -23 381 288 114 39 chr4 53034290 53034638 -131254024 + L1ME4a LINE L1 4781 5190 -956 264 77 0 0 chr4 53034638 53034677 -131253985 + (TAA)n Simple_repeat Simple_repeat 1 39 0 381 288 114 39 chr4 53034677 53034897 -131253765 + L1ME4a LINE L1 5190 5392 -754 315 267 52 9 chr4 53034918 53035034 -131253628 + L1MC4a LINE L1 6059 6179 -1629 882 256 171 49 chr4 53035314 53035413 -131253249 + L1MC4 LINE L1 6415 6501 -1541 3606 21 28 0 chr4 53035413 53035845 -131252817 + L1PA3 LINE L1 5712 6155 0 882 256 171 49 chr4 53035845 53035995 -131252667 + L1MC4 LINE L1 6501 6631 -1411 189 0 0 0 chr4 53035995 53036016 -131252646 + (TG)n Simple_repeat Simple_repeat 2 22 0 882 256 171 49 chr4 53036016 53036257 -131252405 + L1MC4 LINE L1 6631 6966 -1076 1862 193 54 17 chr4 53036257 53036666 -131251996 + MSTC LTR MaLR 1 424 -4 2723 258 48 28 chr4 53036741 53037658 -131251004 + L1MC4 LINE L1 6964 7861 -181 2104 141 44 8 chr4 53037658 53038020 -131250642 - THE1C LTR MaLR 0 375 1 2723 258 48 28 chr4 53038020 53038037 -131250625 + L1MC4 LINE L1 7861 7876 -166 237 33 0 0 chr4 53038037 53038067 -131250595 + (GA)n Simple_repeat Simple_repeat 1 30 0 2723 258 48 28 chr4 53038067 53038188 -131250474 + L1MC4 LINE L1 7876 8041 -1 273 264 80 18 chr4 53038759 53038922 -131249740 - L1MEd LINE L1 -5908 211 39 465 325 88 32 chr4 53039572 53039660 -131249002 + L1ME4a LINE L1 5466 5548 -573 1151 106 141 213 chr4 53039660 53040121 -131248541 + MSTA LTR MaLR 1 428 0 465 325 88 32 chr4 53040121 53040475 -131248187 + L1ME4a LINE L1 5548 5919 -202 472 94 12 12 chr4 53042138 53042223 -131246439 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 3408 133 23 57 chr4 53043660 53044308 -131244354 + L1PB4 LINE L1 5308 5933 -223 203 138 0 0 chr4 53045104 53045133 -131243529 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 684 83 0 0 chr4 53046727 53046823 -131241839 + (TCTCC)n Simple_repeat Simple_repeat 1 96 0 635 80 0 80 chr4 53046828 53046928 -131241734 - MER4B LTR ERV1 -1 609 518 2219 111 0 0 chr4 53047118 53047416 -131241246 - AluSq SINE Alu -13 300 3 276 191 19 9 chr4 53047794 53047899 -131240763 + (TA)n Simple_repeat Simple_repeat 2 107 0 370 377 80 59 chr4 53048541 53048965 -131239697 - L2 LINE L2 -1 3271 2839 1735 142 0 11 chr4 53049066 53049340 -131239322 - AluSx SINE Alu -12 300 30 910 372 51 35 chr4 53049469 53049985 -131238677 - L2 LINE L2 -672 2642 2104 1993 149 0 0 chr4 53049985 53050286 -131238376 + AluSx SINE Alu 1 301 -11 910 372 51 35 chr4 53050286 53050677 -131237985 - L2 LINE L2 -1210 2104 1721 21 36 0 0 chr4 53053151 53053179 -131235483 + AT_rich Low_complexity Low_complexity 1 28 0 1369 288 87 52 chr4 53053513 53054264 -131234398 + HERV16 LTR ERVL 551 1327 -3669 2310 332 66 45 chr4 53054387 53058011 -131230651 + HERV16 LTR ERVL 1560 5356 -408 256 305 95 0 chr4 53058157 53058262 -131230400 + LTR16A LTR ERVL 1 115 -335 2660 211 16 8 chr4 53058525 53059036 -131229626 + MLT2B3 LTR ERVL 1 515 -39 1375 200 82 25 chr4 53059098 53059453 -131229209 + THE1C LTR MaLR 1 375 0 9162 144 19 35 chr4 53059455 53061059 -131227603 + THE1C-int LTR MaLR 3 1579 -1 1686 180 73 17 chr4 53061059 53061414 -131227248 + THE1C LTR MaLR 1 375 0 233 290 14 0 chr4 53061582 53061651 -131227011 + L2 LINE L2 3244 3313 0 2157 183 25 38 chr4 53062078 53062527 -131226135 - MLT2C2 LTR ERVL -2 462 20 2288 97 0 22 chr4 53062894 53063214 -131225448 + AluSq SINE Alu 1 313 0 525 303 9 23 chr4 53064559 53064780 -131223882 + L1ME LINE L1 4807 5024 -1122 568 193 118 0 chr4 53065082 53065217 -131223445 + MIR SINE MIR 109 259 -3 344 321 78 80 chr4 53065444 53065905 -131222757 + L2 LINE L2 2220 2679 -635 22 0 0 0 chr4 53066311 53066333 -131222329 + AT_rich Low_complexity Low_complexity 1 22 0 218 262 33 0 chr4 53066524 53066585 -131222077 + MER5A DNA MER1_type 9 71 -118 703 146 7 42 chr4 53066809 53066953 -131221709 + FRAM SINE Alu 8 146 -30 210 143 0 0 chr4 53066957 53066992 -131221670 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 207 69 0 0 chr4 53067610 53067639 -131221023 + (A)n Simple_repeat Simple_repeat 1 29 0 24 32 0 0 chr4 53068378 53068409 -131220253 + AT_rich Low_complexity Low_complexity 1 31 0 875 296 48 38 chr4 53068643 53069035 -131219627 - MLT1I LTR MaLR -8 401 6 23 0 0 0 chr4 53069751 53069774 -131218888 + AT_rich Low_complexity Low_complexity 1 23 0 290 244 133 22 chr4 53073325 53073415 -131215247 - L2 LINE L2 -4 3268 3169 276 318 48 0 chr4 53074647 53074773 -131213889 + ERVL LTR ERVL 3909 4040 -1724 1173 256 39 11 chr4 53075040 53075404 -131213258 - L1ME3A LINE L1 -188 5982 5609 534 235 0 0 chr4 53075438 53075540 -131213122 + MER96 DNA MER1_type? 73 174 -1 746 279 33 60 chr4 53075590 53076071 -131212591 - L1ME3A LINE L1 -1101 5045 4578 1653 175 24 0 chr4 53076722 53077013 -131211649 - AluJb SINE Alu -14 298 1 278 267 7 48 chr4 53077189 53077335 -131211327 + T-rich Low_complexity Low_complexity 2 141 0 23 33 0 0 chr4 53078764 53078794 -131209868 + AT_rich Low_complexity Low_complexity 1 30 0 1137 280 60 8 chr4 53080808 53081305 -131207357 + L1ME LINE L1 5262 5784 -378 2892 165 4 4 chr4 53081306 53081791 -131206871 + MER66B LTR ERV1 2 486 0 22 56 0 0 chr4 53082348 53082384 -131206278 + AT_rich Low_complexity Low_complexity 1 36 0 28 48 0 0 chr4 53082970 53083012 -131205650 + AT_rich Low_complexity Low_complexity 1 42 0 246 329 83 92 chr4 53083206 53083641 -131205021 - L3 LINE CR1 -1 1576 1146 421 359 30 13 chr4 53083989 53084220 -131204442 - MIR SINE MIR -10 252 18 209 277 15 0 chr4 53084845 53084910 -131203752 + L2 LINE L2 2345 2410 -904 203 321 83 28 chr4 53085091 53085200 -131203462 - L2 LINE L2 -9 3304 3190 23 0 0 0 chr4 53085975 53085998 -131202664 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr4 53086036 53086058 -131202604 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr4 53086235 53086262 -131202400 + AT_rich Low_complexity Low_complexity 1 27 0 1871 173 88 26 chr4 53086427 53086884 -131201778 - MER31A LTR ERV1 0 485 1 462 322 78 25 chr4 53086966 53087211 -131201451 - L2 LINE L2 -18 3295 3038 22 70 0 0 chr4 53089076 53089119 -131199543 + AT_rich Low_complexity Low_complexity 1 43 0 26 0 0 0 chr4 53089407 53089433 -131199229 + AT_rich Low_complexity Low_complexity 1 26 0 206 167 71 0 chr4 53089856 53089898 -131198764 + L2 LINE L2 3226 3270 -2 21 36 0 0 chr4 53091376 53091404 -131197258 + AT_rich Low_complexity Low_complexity 1 28 0 930 73 0 0 chr4 53091418 53091541 -131197121 + L1PA6 LINE L1 5872 5994 -160 195 100 0 0 chr4 53094753 53094783 -131193879 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 2069 158 11 11 chr4 53094880 53095241 -131193421 - THE1C LTR MaLR 0 375 15 244 275 132 54 chr4 53095511 53095678 -131192984 - LTR33 LTR ERVL -53 468 289 3107 128 27 31 chr4 53095796 53096352 -131192310 + MER41A LTR ERV1 1 554 0 21 57 0 0 chr4 53097898 53097933 -131190729 + AT_rich Low_complexity Low_complexity 1 35 0 182 383 128 14 chr4 53098171 53098312 -131190350 + L2 LINE L2 3116 3272 0 207 114 0 0 chr4 53098313 53098348 -131190314 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 773 148 0 21 chr4 53098389 53098531 -131190131 - L1PB3 LINE L1 0 6154 6016 184 299 82 31 chr4 53098714 53098811 -131189851 - MIR SINE MIR -62 146 45 182 367 147 23 chr4 53099307 53099566 -131189096 - L2 LINE L2 -18 3295 3005 1817 171 0 7 chr4 53099844 53100148 -131188514 - AluSx SINE Alu -10 302 1 753 60 26 0 chr4 53100324 53100440 -131188222 + (TCTA)n Simple_repeat Simple_repeat 4 122 0 551 220 20 13 chr4 53100595 53100745 -131187917 - AluSp/q SINE Alu -2 311 161 2350 80 23 0 chr4 53101085 53101387 -131187275 - AluSc SINE Alu 0 309 1 228 186 0 0 chr4 53101521 53101580 -131187082 + (CAT)n Simple_repeat Simple_repeat 2 60 0 368 284 39 65 chr4 53101580 53101735 -131186927 - MIR SINE MIR -8 254 104 26 0 0 0 chr4 53101857 53101883 -131186779 + AT_rich Low_complexity Low_complexity 1 26 0 2098 145 0 0 chr4 53102043 53102347 -131186315 + AluSx SINE Alu 3 306 -6 215 157 20 0 chr4 53102697 53102748 -131185914 + CT-rich Low_complexity Low_complexity 1 52 0 325 138 0 35 chr4 53102749 53102807 -131185855 + (TCCC)n Simple_repeat Simple_repeat 2 57 0 798 174 11 6 chr4 53102808 53102986 -131185676 + CT-rich Low_complexity Low_complexity 2 180 0 181 148 19 19 chr4 53103367 53103421 -131185241 + (TA)n Simple_repeat Simple_repeat 1 54 0 1954 140 0 14 chr4 53103421 53103743 -131184919 - AluSq SINE Alu 0 322 5 1697 158 25 4 chr4 53103871 53104150 -131184512 + AluSx SINE Alu 1 285 -27 531 69 0 0 chr4 53104150 53104222 -131184440 + (GA)n Simple_repeat Simple_repeat 1 72 0 608 240 7 0 chr4 53105626 53105776 -131182886 + L1MA10 LINE L1 6168 6318 -16 2101 126 13 3 chr4 53105802 53106112 -131182550 + AluSq SINE Alu 1 313 0 2800 158 85 2 chr4 53106222 53106729 -131181933 - ERVL LTR ERVL -756 5008 4460 * 5505 206 23 21 chr4 53106727 53107851 -131180811 - ERVL LTR ERVL -1161 4603 3478 479 296 93 0 chr4 53108017 53108179 -131180483 + MIR SINE MIR 69 245 -17 219 103 0 0 chr4 53109063 53109092 -131179570 + (TCCC)n Simple_repeat Simple_repeat 3 31 0 802 171 0 27 chr4 53109092 53109339 -131179323 + CT-rich Low_complexity Low_complexity 1 240 0 1949 123 70 22 chr4 53109644 53110002 -131178660 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr4 53110592 53110613 -131178049 + AT_rich Low_complexity Low_complexity 1 21 0 244 336 28 7 chr4 53111692 53111835 -131176827 - MLT1K LTR MaLR -2 586 441 516 321 55 21 chr4 53113447 53113684 -131174978 - MIR SINE MIR -13 249 5 292 160 49 7 chr4 53114773 53114917 -131173745 + (TA)n Simple_repeat Simple_repeat 1 150 0 1346 236 57 23 chr4 53115397 53115834 -131172828 - L1ME2 LINE L1 -1 6163 5712 1007 287 81 8 chr4 53115923 53115941 -131172721 - L1ME2 LINE L1 -1829 4317 4302 2840 10 0 0 chr4 53115941 53116248 -131172414 - AluY SINE Alu -4 307 1 1007 287 81 8 chr4 53116248 53116723 -131171939 - L1ME2 LINE L1 -1844 4302 3788 1043 231 0 29 chr4 53117016 53117297 -131171365 - L1PB2 LINE L1 -2059 4087 3815 * 5683 204 7 39 chr4 53117294 53119036 -131169626 + L1PB2 LINE L1 4060 5856 -295 309 109 0 0 chr4 53119036 53119082 -131169580 + (TA)n Simple_repeat Simple_repeat 2 47 0 5683 204 7 39 chr4 53119082 53119313 -131169349 + L1PB2 LINE L1 5856 5961 -190 2160 129 0 0 chr4 53119313 53119615 -131169047 + AluSg SINE Alu 1 302 -8 5683 204 7 39 chr4 53119615 53119799 -131168863 + L1PB2 LINE L1 5961 6149 -2 916 262 67 25 chr4 53119801 53120282 -131168380 - L1 LINE L1 -2760 3386 2886 433 300 119 23 chr4 53120823 53121083 -131167579 + L1M4 LINE L1 2739 3023 -3123 210 342 13 0 chr4 53121112 53121188 -131167474 - L2 LINE L2 -43 3229 3153 201 193 34 34 chr4 53121303 53121391 -131167271 + (ATATG)n Simple_repeat Simple_repeat 3 90 0 1109 241 78 71 chr4 53121780 53122090 -131166572 + LTR40b LTR ERVL 3 318 -144 196 0 118 0 chr4 53122090 53122124 -131166538 + A-rich Low_complexity Low_complexity 2 39 0 1109 241 78 71 chr4 53122124 53122248 -131166414 + LTR40b LTR ERVL 318 440 -22 5006 146 88 129 chr4 53124508 53126025 -131162637 - pTR5 LTR ERV1 -143 2295 73 517 333 52 44 chr4 53126025 53126482 -131162180 + MER20B DNA MER1_type 55 515 -268 24 67 0 0 chr4 53127118 53127163 -131161499 + AT_rich Low_complexity Low_complexity 1 45 0 186 43 0 0 chr4 53127415 53127438 -131161224 + (TC)n Simple_repeat Simple_repeat 2 24 0 498 290 50 45 chr4 53129403 53129624 -131159038 + MIR SINE MIR 28 249 -13 25 0 0 0 chr4 53129944 53129969 -131158693 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr4 53130030 53130062 -131158600 + AT_rich Low_complexity Low_complexity 1 32 0 189 0 0 0 chr4 53131238 53131259 -131157403 + (T)n Simple_repeat Simple_repeat 1 21 0 227 211 0 14 chr4 53131665 53131736 -131156926 + CT-rich Low_complexity Low_complexity 2 71 0 22 56 0 0 chr4 53132954 53132990 -131155672 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr4 53133130 53133153 -131155509 + AT_rich Low_complexity Low_complexity 1 23 0 192 281 0 35 chr4 53133399 53133470 -131155192 - MIR SINE MIR -103 105 52 723 266 18 14 chr4 53134310 53134532 -131154130 + MER115 DNA AcHobo 461 683 -10 22 35 0 0 chr4 53134754 53134783 -131153879 + AT_rich Low_complexity Low_complexity 1 29 0 514 345 6 12 chr4 53134917 53135085 -131153577 + L2 LINE L2 2925 3091 -181 190 348 79 0 chr4 53135199 53135288 -131153374 - L2 LINE L2 -6 3266 3171 3971 202 46 47 chr4 53136101 53138015 -131150647 + L1MA9 LINE L1 4256 6189 -123 362 21 21 0 chr4 53138015 53138062 -131150600 + (CA)n Simple_repeat Simple_repeat 1 48 0 3971 202 46 47 chr4 53138062 53138186 -131150476 + L1MA9 LINE L1 6189 6312 0 1479 208 45 12 chr4 53138244 53138576 -131150086 + MER2 DNA MER2_type 2 344 0 517 236 129 21 chr4 53138576 53138625 -131150037 + L1MC5 LINE L1 7604 7646 -315 5663 33 1 0 chr4 53138625 53139294 -131149368 + L1PA4 LINE L1 5481 6150 -5 517 236 129 21 chr4 53139294 53139524 -131149138 + L1MC5 LINE L1 7646 7913 -48 336 295 85 16 chr4 53139779 53139908 -131148754 - MIR SINE MIR -66 196 59 1469 233 107 28 chr4 53140206 53140609 -131148053 + MLT1D LTR MaLR 1 447 -58 2022 118 36 0 chr4 53140609 53140889 -131147773 - AluSg SINE Alu -20 290 1 1469 233 107 28 chr4 53140889 53140953 -131147709 + MLT1D LTR MaLR 447 505 0 6096 167 28 51 chr4 53141221 53142466 -131146196 + L1MA3 LINE L1 3823 5095 -1210 1615 192 3 10 chr4 53142466 53142768 -131145894 + AluJb SINE Alu 1 300 -12 6096 167 28 51 chr4 53142768 53143570 -131145092 + L1MA3 LINE L1 5095 5796 -509 318 26 0 0 chr4 53143570 53143609 -131145053 + (CA)n Simple_repeat Simple_repeat 2 40 0 6096 167 28 51 chr4 53143609 53144088 -131144574 + L1MA3 LINE L1 5796 6285 -20 1808 231 36 2 chr4 53144145 53144622 -131144040 + L1MA5 LINE L1 4909 5401 -745 2566 140 32 34 chr4 53144622 53145128 -131143534 + L1MA5 LINE L1 5790 6294 -6 27 29 0 0 chr4 53145489 53145523 -131143139 + AT_rich Low_complexity Low_complexity 1 34 0 27 49 0 0 chr4 53146870 53146911 -131141751 + AT_rich Low_complexity Low_complexity 1 41 0 28 29 0 0 chr4 53146955 53146990 -131141672 + AT_rich Low_complexity Low_complexity 1 35 0 181 349 61 38 chr4 53147356 53147488 -131141174 + L2 LINE L2 2950 3084 -188 21 36 0 0 chr4 53147823 53147851 -131140811 + AT_rich Low_complexity Low_complexity 1 28 0 2651 36 0 0 chr4 53148259 53148565 -131140097 + AluY SINE Alu 1 306 -5 5009 255 96 34 chr4 53148569 53150721 -131137941 - L1M4c LINE L1 -4652 2307 29 472 116 0 0 chr4 53151084 53151153 -131137509 + AluSc SINE Alu 227 295 -14 1416 255 33 48 chr4 53151153 53151573 -131137089 - MLT2B1 LTR ERVL -79 441 28 3746 179 34 1 chr4 53151588 53152297 -131136365 - ERVL-B1 LTR ERVL -13 5751 5020 1520 220 10 0 chr4 53152543 53152852 -131135810 - AluSx SINE Alu 0 312 1 1669 137 32 54 chr4 53152870 53152990 -131135672 - Tigger3(Golem) DNA MER2_type 0 3028 2907 1581 137 60 81 chr4 53152990 53153371 -131135291 - THE1C LTR MaLR 0 375 3 1669 137 32 54 chr4 53153371 53153565 -131135097 - Tigger3(Golem) DNA MER2_type -121 2907 2721 243 357 32 0 chr4 53153882 53154008 -131134654 + L1ME LINE L1 5507 5636 -485 273 57 0 0 chr4 53154450 53154485 -131134177 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1824 92 4 0 chr4 53154496 53154736 -131133926 - AluSc SINE Alu -68 241 1 322 256 37 24 chr4 53154736 53154818 -131133844 - MLT1J1 LTR MaLR -120 326 244 272 128 51 0 chr4 53155839 53155917 -131132745 + (TA)n Simple_repeat Simple_repeat 1 82 0 5976 205 54 52 chr4 53157047 53158800 -131129862 - MER52A LTR ERV1 0 1755 1 840 208 0 0 chr4 53159358 53159517 -131129145 - AluJb SINE Alu 0 312 154 2759 90 19 10 chr4 53159521 53159933 -131128729 + L1PA10 LINE L1 5752 6167 -1 313 359 94 9 chr4 53161230 53161453 -131127209 - MIR SINE MIR -13 249 8 36 87 0 0 chr4 53162261 53162353 -131126309 + AT_rich Low_complexity Low_complexity 1 92 0 252 86 0 0 chr4 53162827 53162862 -131125800 + (TC)n Simple_repeat Simple_repeat 2 36 0 1665 117 35 0 chr4 53162881 53163112 -131125550 - AluSp SINE Alu -74 239 1 22 0 0 0 chr4 53163752 53163774 -131124888 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 53164608 53164629 -131124033 + AT_rich Low_complexity Low_complexity 1 21 0 2143 123 3 0 chr4 53166659 53166959 -131121703 + AluSq SINE Alu 1 301 -12 362 278 70 39 chr4 53168335 53168628 -131120034 - AluSc SINE Alu 0 333 33 202 132 44 33 chr4 53169125 53169216 -131119446 + (TGGG)n Simple_repeat Simple_repeat 1 92 0 211 184 41 0 chr4 53169372 53169421 -131119241 + CT-rich Low_complexity Low_complexity 3 53 0 1443 218 19 16 chr4 53169421 53169729 -131118933 - AluJo SINE Alu 0 312 4 22 0 0 0 chr4 53169816 53169838 -131118824 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 53169927 53169957 -131118705 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr4 53170506 53170537 -131118125 + AT_rich Low_complexity Low_complexity 1 31 0 27 29 0 0 chr4 53171343 53171377 -131117285 + AT_rich Low_complexity Low_complexity 1 34 0 300 221 53 8 chr4 53172229 53172360 -131116302 + (TA)n Simple_repeat Simple_repeat 1 137 0 204 189 68 0 chr4 53172383 53172457 -131116205 + (TA)n Simple_repeat Simple_repeat 1 79 0 727 295 54 86 chr4 53173296 53173832 -131114830 - LTR67 LTR ERVL -32 525 7 333 0 0 0 chr4 53174003 53174040 -131114622 + (TTA)n Simple_repeat Simple_repeat 3 39 0 1361 44 0 38 chr4 53174040 53174223 -131114439 - L1PA5 LINE L1 -18 6136 5961 3539 26 2 0 chr4 53174223 53174638 -131114024 + L1PA5 LINE L1 5548 5963 -191 1815 152 22 0 chr4 53174920 53175231 -131113431 - AluSx SINE Alu 0 317 1 239 324 158 49 chr4 53175365 53175859 -131112803 + L2 LINE L2 1851 2398 -916 1683 172 31 3 chr4 53176444 53176734 -131111928 - AluJo SINE Alu -14 298 1 28 61 0 0 chr4 53177627 53177676 -131110986 + AT_rich Low_complexity Low_complexity 1 49 0 239 154 0 46 chr4 53177971 53177979 -131110683 + (TA)n Simple_repeat Simple_repeat 1 8 -54 3646 123 67 3 chr4 53177979 53178575 -131110087 - MER51A LTR ERV1 0 634 1 239 154 0 46 chr4 53178575 53178631 -131110031 + (TA)n Simple_repeat Simple_repeat 8 62 0 534 249 215 63 chr4 53178631 53178980 -131109682 + MLT1D LTR MaLR 68 469 -36 225 400 12 0 chr4 53179472 53179557 -131109105 - HAL1 LINE L1 -596 1911 1826 21 57 0 0 chr4 53179659 53179694 -131108968 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr4 53180576 53180606 -131108056 + AT_rich Low_complexity Low_complexity 1 30 0 326 337 37 21 chr4 53180685 53180872 -131107790 - HERV16 LTR ERVL -1108 4546 4357 296 318 186 0 chr4 53180920 53181049 -131107613 - HERV16 LTR ERVL -3020 1976 1824 2648 319 91 42 chr4 53181182 53182697 -131105965 - HERV16 LTR ERVL -3405 1591 2 695 333 82 24 chr4 53182701 53183031 -131105631 - LTR16A LTR ERVL -5 445 97 27 29 0 0 chr4 53185019 53185053 -131103609 + AT_rich Low_complexity Low_complexity 1 34 0 1747 194 78 61 chr4 53186649 53187108 -131101554 - MLT1C LTR MaLR 0 467 1 1458 126 0 0 chr4 53187973 53188188 -131100474 - AluSg/x SINE Alu -4 308 94 22 0 0 0 chr4 53188715 53188737 -131099925 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 53189051 53189072 -131099590 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr4 53189154 53189188 -131099474 + AT_rich Low_complexity Low_complexity 1 34 0 456 253 0 0 chr4 53189689 53189784 -131098878 + MSTD LTR MaLR 3 97 -331 1368 158 33 12 chr4 53189789 53190030 -131098632 + AluSq SINE Alu 1 246 -67 1221 100 0 0 chr4 53190031 53190191 -131098471 + AluSq SINE Alu 5 164 -149 441 146 0 34 chr4 53190191 53190280 -131098382 + AluYb8 SINE Alu 228 313 -5 761 221 136 36 chr4 53190280 53190525 -131098137 + MSTD LTR MaLR 93 394 -2 220 343 82 55 chr4 53190623 53190769 -131097893 - MER5A DNA MER1_type -3 186 37 545 325 89 53 chr4 53193170 53193638 -131095024 + L2 LINE L2 2672 3170 -143 428 271 171 0 chr4 53194071 53194200 -131094462 - L2 LINE L2 -5 3308 3158 211 244 13 13 chr4 53194211 53194289 -131094373 + (TA)n Simple_repeat Simple_repeat 1 78 0 365 215 11 21 chr4 53194461 53194554 -131094108 - Charlie1a DNA MER1_type -4 1451 1360 2389 204 95 20 chr4 53194619 53195364 -131093298 - Charlie1a DNA MER1_type -99 1356 556 270 73 0 0 chr4 53195381 53195422 -131093240 + (TG)n Simple_repeat Simple_repeat 1 41 0 515 249 47 47 chr4 53195422 53195615 -131093047 - Charlie1a DNA MER1_type -1230 225 33 369 235 106 65 chr4 53196732 53196816 -131091846 + MIR SINE MIR 86 165 -97 2041 107 7 39 chr4 53196816 53197124 -131091538 + AluSp SINE Alu 1 298 -15 369 235 106 65 chr4 53197124 53197209 -131091453 + MIR SINE MIR 165 262 0 270 0 0 0 chr4 53197411 53197441 -131091221 + (A)n Simple_repeat Simple_repeat 1 30 0 301 257 14 0 chr4 53198942 53199016 -131089646 + (CATATA)n Simple_repeat Simple_repeat 3 77 0 315 0 0 0 chr4 53199366 53199401 -131089261 + (CA)n Simple_repeat Simple_repeat 1 35 0 2264 112 0 0 chr4 53199630 53199942 -131088720 + AluSx SINE Alu 1 312 0 421 78 101 4 chr4 53200740 53201003 -131087659 + (TA)n Simple_repeat Simple_repeat 1 288 0 303 99 57 43 chr4 53200945 53201086 -131087576 + (TATAA)n Simple_repeat Simple_repeat 2 144 0 * 300 130 34 34 chr4 53201078 53201255 -131087407 + (TAA)n Simple_repeat Simple_repeat 3 179 0 * 713 84 68 18 chr4 53201225 53201747 -131086915 + (TA)n Simple_repeat Simple_repeat 1 547 0 22 35 0 0 chr4 53201973 53202002 -131086660 + AT_rich Low_complexity Low_complexity 1 29 0 540 136 0 0 chr4 53203127 53203208 -131085454 - AluSg/x SINE Alu -18 291 211 480 89 0 0 chr4 53203567 53203646 -131085016 + (TA)n Simple_repeat Simple_repeat 1 79 0 22 70 0 0 chr4 53203907 53203950 -131084712 + AT_rich Low_complexity Low_complexity 1 43 0 377 284 256 33 chr4 53204033 53204244 -131084418 + MIR SINE MIR 5 262 0 27 0 0 0 chr4 53205011 53205038 -131083624 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chr4 53206222 53206259 -131082403 + AT_rich Low_complexity Low_complexity 1 37 0 483 307 145 14 chr4 53207198 53207481 -131081181 + LTR67 LTR ERVL 210 529 -28 21 0 0 0 chr4 53207933 53207954 -131080708 + AT_rich Low_complexity Low_complexity 1 21 0 621 192 53 159 chr4 53208133 53208261 -131080401 - MLT1A2 LTR MaLR -104 270 191 1973 142 0 3 chr4 53208261 53208557 -131080105 - AluSc SINE Alu -14 295 1 621 192 53 159 chr4 53208557 53208730 -131079932 - MLT1A2 LTR MaLR -183 191 1 2465 252 151 44 chr4 53208731 53209982 -131078680 - MLT1A2-int LTR MaLR -1 1370 5 1434 262 8 73 chr4 53210012 53210508 -131078154 - MLT2B1 LTR ERVL -56 464 1 332 240 48 96 chr4 53211604 53211750 -131076912 + LTR16C LTR ERVL 1 139 -352 352 203 149 0 chr4 53211991 53212109 -131076553 + MLT1C LTR MaLR 1 133 -257 709 286 85 27 chr4 53212165 53212494 -131076168 + MLT1C LTR MaLR 97 444 -23 2052 107 0 54 chr4 53213111 53213428 -131075234 - AluSg SINE Alu -10 300 1 194 105 26 0 chr4 53213949 53213987 -131074675 + (TCTA)n Simple_repeat Simple_repeat 3 41 0 2119 106 0 7 chr4 53214669 53214987 -131073675 - AluSg SINE Alu 0 316 1 613 280 126 25 chr4 53215310 53215628 -131073034 - L1M4 LINE L1 -399 5785 5436 375 360 92 23 chr4 53216134 53216523 -131072139 - L1M4 LINE L1 -2042 4104 3689 6755 66 7 3 chr4 53216524 53217571 -131071091 - L1PA7 LINE L1 -8 6146 5097 2445 103 0 0 chr4 53217573 53217922 -131070740 + L1PA7 LINE L1 4746 5094 -1052 324 247 147 67 chr4 53218253 53218403 -131070259 - MIR SINE MIR -59 203 42 23 54 0 0 chr4 53218944 53218981 -131069681 + AT_rich Low_complexity Low_complexity 1 37 0 31 88 0 0 chr4 53219727 53219807 -131068855 + AT_rich Low_complexity Low_complexity 1 80 0 908 177 39 6 chr4 53219846 53220027 -131068635 + MLT1D LTR MaLR 5 191 -314 21 0 0 0 chr4 53220185 53220206 -131068456 + AT_rich Low_complexity Low_complexity 1 21 0 436 155 10 19 chr4 53220630 53220733 -131067929 - L1MA4 LINE L1 -2 6298 6197 1069 220 23 81 chr4 53220957 53221302 -131067360 + MLT1D LTR MaLR 181 505 0 1346 167 73 17 chr4 53221612 53221912 -131066750 + MER33 DNA MER1_type 8 324 0 873 153 57 6 chr4 53221945 53222121 -131066541 + MLT1C LTR MaLR 1 185 -282 1101 241 28 24 chr4 53222121 53222370 -131066292 + AluJo SINE Alu 1 250 -62 22 35 0 0 chr4 53222379 53222408 -131066254 + AT_rich Low_complexity Low_complexity 1 29 0 924 228 34 55 chr4 53222409 53222718 -131065944 + MLT1C LTR MaLR 173 390 0 1636 125 31 146 chr4 53222823 53223247 -131065415 - THE1C LTR MaLR 0 375 1 273 277 264 45 chr4 53223399 53223619 -131065043 + L2 LINE L2 2075 2342 -972 797 238 34 21 chr4 53224027 53224262 -131064400 + MER21-int LTR ERV1 30 267 -3924 180 111 0 0 chr4 53224262 53224289 -131064373 + (GAAA)n Simple_repeat Simple_repeat 3 29 0 612 284 11 17 chr4 53224289 53224465 -131064197 + MER21-int LTR ERV1 257 431 -3760 1022 309 36 26 chr4 53224515 53224936 -131063726 + MER21-int LTR ERV1 1213 1637 -2554 2630 250 84 81 chr4 53225021 53226236 -131062426 + MER21-int LTR ERV1 1673 2837 -1354 394 408 31 17 chr4 53226236 53226528 -131062134 - L1MEd LINE L1 -5358 761 466 717 233 53 56 chr4 53226555 53226821 -131061841 + MLT1C LTR MaLR 8 272 -195 1737 127 80 0 chr4 53227099 53227375 -131061287 - AluY SINE Alu -11 300 3 195 200 0 89 chr4 53228509 53228554 -131060108 - L2 LINE L2 -1 3271 3231 225 0 0 0 chr4 53229084 53229109 -131059553 + (TG)n Simple_repeat Simple_repeat 2 26 0 982 251 71 22 chr4 53229112 53229435 -131059227 - MER2 DNA MER2_type 0 345 7 23 86 0 0 chr4 53229541 53229599 -131059063 + AT_rich Low_complexity Low_complexity 1 58 0 1793 216 44 18 chr4 53231288 53231742 -131056920 + MER31B LTR ERV1 1 466 0 326 318 5 64 chr4 53231891 53232019 -131056643 + L1M4 LINE L1 5192 5303 -843 1732 177 3 16 chr4 53232019 53232335 -131056327 + AluSx SINE Alu 1 312 0 326 318 5 64 chr4 53232335 53232426 -131056236 + L1M4 LINE L1 5303 5398 -748 315 266 62 18 chr4 53232508 53232621 -131056041 + MLT1J LTR MaLR 117 234 -277 1836 129 7 7 chr4 53232791 53233108 -131055554 - AluSx SINE Alu 0 320 4 237 65 0 0 chr4 53233310 53233341 -131055321 + (TTA)n Simple_repeat Simple_repeat 3 33 0 1104 52 0 0 chr4 53233341 53233476 -131055186 - L1PA7 LINE L1 -18 6136 6002 8554 85 2 0 chr4 53233476 53234658 -131054004 + L1P LINE L1 3579 4763 -1383 343 187 19 65 chr4 53234786 53234836 -131053826 - MLT1J LTR MaLR -295 216 172 972 205 104 41 chr4 53234836 53235153 -131053509 - MER44D DNA MER2_type -1 608 2 343 187 19 65 chr4 53235153 53235209 -131053453 - MLT1J LTR MaLR -339 172 115 1895 58 4 0 chr4 53237587 53237829 -131050833 - L1PA7 LINE L1 0 6154 5912 357 366 37 12 chr4 53237952 53238116 -131050546 - MIR SINE MIR -3 259 92 23 54 0 0 chr4 53238327 53238364 -131050298 + AT_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr4 53238557 53238593 -131050069 + AT_rich Low_complexity Low_complexity 1 36 0 998 124 57 23 chr4 53238647 53238824 -131049838 - Tigger2 DNA MER2_type -256 2462 2280 225 280 0 0 chr4 53239259 53239309 -131049353 + MER52C LTR ERV1 33 82 -1196 * 5927 179 113 42 chr4 53239298 53240752 -131047910 + MER52A LTR ERV1 197 1753 -2 357 125 0 0 chr4 53240753 53240801 -131047861 - Tigger2 DNA MER2_type -2670 48 1 24 0 0 0 chr4 53240853 53240877 -131047785 + AT_rich Low_complexity Low_complexity 1 24 0 186 325 72 0 chr4 53241434 53241517 -131047145 + MIR SINE MIR 164 252 -10 819 316 26 36 chr4 53241777 53242246 -131046416 + LTR16B LTR ERVL 1 464 0 225 356 128 20 chr4 53242636 53242785 -131045877 - MIR3 SINE MIR -4 204 40 211 113 81 0 chr4 53244366 53244428 -131044234 + (TA)n Simple_repeat Simple_repeat 1 67 0 184 200 0 0 chr4 53244541 53244576 -131044086 - MIR SINE MIR -12 250 216 4413 211 21 15 chr4 53245371 53245894 -131042768 + L1MA9 LINE L1 5261 5779 -533 180 0 0 0 chr4 53245894 53245914 -131042748 + (TA)n Simple_repeat Simple_repeat 1 20 0 4413 211 21 15 chr4 53245914 53246431 -131042231 + L1MA9 LINE L1 5779 6312 0 593 329 74 29 chr4 53246619 53246929 -131041733 - L2 LINE L2 -1176 2138 1815 2542 179 15 19 chr4 53247160 53247635 -131041027 + Tigger1 DNA MER2_type 1 473 -1945 1340 185 4 33 chr4 53247645 53247915 -131040747 - AluJb SINE Alu -18 294 33 894 132 5 74 chr4 53247915 53248105 -131040557 + Tigger1 DNA MER2_type 469 645 -1773 215 31 31 0 chr4 53248236 53248268 -131040394 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 285 291 12 23 chr4 53248268 53248354 -131040308 + MIR SINE MIR 113 197 -65 22 70 0 0 chr4 53249401 53249444 -131039218 + AT_rich Low_complexity Low_complexity 1 43 0 1214 153 35 0 chr4 53250947 53251150 -131037512 - Tigger2 DNA MER2_type -10 2708 2499 940 290 58 17 chr4 53251152 53251614 -131037048 + L1PBa LINE L1 6 486 -6377 1132 245 92 40 chr4 53451619 53452089 -130836573 - MLT1F1 LTR MaLR -72 521 1 212 326 11 32 chr4 53452091 53452186 -130836476 - MIR SINE MIR -109 153 61 1783 180 28 8 chr4 53452859 53453259 -130835403 - L1MC3 LINE L1 0 7785 7378 2285 88 0 44 chr4 53453345 53453664 -130834998 + AluSg SINE Alu 1 305 -5 1346 391 33 13 chr4 53454341 53454794 -130833868 + MLT1C LTR MaLR 6 467 0 599 277 68 18 chr4 53455613 53455833 -130832829 - MIR SINE MIR -1 261 31 222 280 72 118 chr4 53455863 53456167 -130832495 - L2 LINE L2 -440 2874 2585 277 376 81 6 chr4 53456682 53456855 -130831807 + L2 LINE L2 2866 3051 -221 255 264 69 14 chr4 53456974 53457046 -130831616 - L2 LINE L2 -1 3312 3237 41 87 0 0 chr4 53457325 53457429 -130831233 + AT_rich Low_complexity Low_complexity 1 104 0 480 252 97 48 chr4 53457446 53457819 -130830843 - L1ME4a LINE L1 -56 6065 5675 * 1848 231 30 4 chr4 53457799 53458262 -130830400 + L1ME2 LINE L1 5683 6157 -7 430 367 74 17 chr4 53458738 53459141 -130829521 - L2 LINE L2 -369 2945 2520 400 235 0 0 chr4 53459593 53459678 -130828984 + MER58 DNA MER1_type 15 99 -2321 362 163 87 33 chr4 53459686 53459778 -130828884 + MER58 DNA MER1_type 2324 2420 0 481 167 21 0 chr4 53459778 53459874 -130828788 - MER105 DNA DNA -105 99 2 1663 185 14 35 chr4 53460180 53460547 -130828115 + MLT1A2 LTR MaLR 1 359 -15 216 259 35 0 chr4 53460913 53460971 -130827691 - MER5B DNA MER1_type -7 171 112 1701 163 64 16 chr4 53461310 53461684 -130826978 - MER63B DNA MER1_type -44 392 1 581 257 71 19 chr4 53461721 53461931 -130826731 + LTR33 LTR ERVL 301 521 0 265 295 19 9 chr4 53462020 53462125 -130826537 + MER103 DNA DNA 2 107 -59 2161 138 0 3 chr4 53462233 53462544 -130826118 + AluSx SINE Alu 3 312 0 22 0 0 0 chr4 53463736 53463758 -130824904 + AT_rich Low_complexity Low_complexity 1 22 0 1351 203 180 18 chr4 53464038 53464427 -130824235 + MER66A LTR ERV1 1 452 -26 213 320 0 98 chr4 53464613 53464665 -130823997 - MIR SINE MIR -62 146 111 2012 114 44 3 chr4 53464665 53464963 -130823699 - AluY SINE Alu -1 310 1 213 320 0 98 chr4 53464963 53465032 -130823630 - MIR SINE MIR -97 111 37 299 343 76 40 chr4 53465297 53465548 -130823114 + L2 LINE L2 2831 3090 -182 2047 104 4 0 chr4 53465805 53466073 -130822589 - AluSp SINE Alu -44 269 1 405 210 0 134 chr4 53466075 53466232 -130822430 - L1ME LINE L1 -347 5823 5688 2414 176 67 14 chr4 53466589 53467082 -130821580 - LTR53 LTR ERVL 0 519 1 202 97 32 0 chr4 53467363 53467394 -130821268 + GA-rich Low_complexity Low_complexity 1 32 0 192 361 10 31 chr4 53467570 53467667 -130820995 + L2 LINE L2 3162 3256 -16 513 204 0 9 chr4 53467700 53467808 -130820854 + MER5A DNA MER1_type 9 115 -74 207 0 0 0 chr4 53468386 53468409 -130820253 + (T)n Simple_repeat Simple_repeat 1 23 0 27 29 0 0 chr4 53468586 53468620 -130820042 + AT_rich Low_complexity Low_complexity 1 34 0 511 333 125 12 chr4 53468875 53469211 -130819451 - L2 LINE L2 -658 2656 2283 564 342 9 22 chr4 53469662 53469984 -130818678 + L1MC1 LINE L1 553 870 -5660 376 204 100 29 chr4 53470142 53470289 -130818373 - L1MD2 LINE L1 -1 7807 6214 244 233 33 0 chr4 53470290 53470350 -130818312 - L1MD2 LINE L1 -218 6141 6080 317 227 0 0 chr4 53470350 53470425 -130818237 + AluJ/FLAM SINE Alu 2 61 -241 1343 171 4 29 chr4 53470539 53470785 -130817877 + AluJo SINE Alu 72 311 -1 1757 222 23 23 chr4 53470789 53471231 -130817431 - L1MD1 LINE L1 -180 6062 5621 776 264 42 32 chr4 53471598 53472007 -130816655 + L1MC1 LINE L1 1508 1920 -4620 1162 231 74 8 chr4 53472042 53472419 -130816243 + L1MC1 LINE L1 2985 3386 -3154 807 211 19 27 chr4 53472416 53472672 -130815990 + L1MC1 LINE L1 4833 5086 -1454 * 338 85 0 0 chr4 53472672 53472719 -130815943 + Alu SINE Alu 1 47 -256 2442 70 3 3 chr4 53472877 53473177 -130815485 - AluSc SINE Alu -9 300 1 29589 110 13 69 chr4 53473184 53479696 -130808966 - L1PA7 LINE L1 -2 6152 12 621 304 103 5 chr4 53479796 53480020 -130808642 - MIR SINE MIR -2 260 15 1664 181 37 5 chr4 53480317 53480720 -130807942 + Charlie1 DNA MER1_type 2346 2761 0 182 250 0 0 chr4 53480861 53480901 -130807761 - MIR SINE MIR -75 187 148 4695 156 37 30 chr4 53480945 53481482 -130807180 + L1MC1 LINE L1 5767 6314 -413 2540 50 3 0 chr4 53481482 53481779 -130806883 + AluY SINE Alu 1 298 -13 4695 156 37 30 chr4 53481779 53482191 -130806471 + L1MC1 LINE L1 6314 6722 -5 252 322 79 35 chr4 53482378 53482520 -130806142 - MIR SINE MIR -62 146 4 238 269 60 40 chr4 53482826 53482860 -130805802 + L1ME4a LINE L1 5741 5773 -2035 207 0 0 0 chr4 53482860 53482883 -130805779 + (TG)n Simple_repeat Simple_repeat 1 23 0 238 269 60 40 chr4 53482883 53482997 -130805665 + L1ME4a LINE L1 5773 5892 -1916 326 265 0 0 chr4 53483330 53483398 -130805264 + L2 LINE L2 3246 3313 0 297 289 122 11 chr4 53483558 53483648 -130805014 - MIR SINE MIR -132 130 31 537 259 36 24 chr4 53483924 53484090 -130804572 - MIR SINE MIR -75 187 20 485 284 74 49 chr4 53487016 53487259 -130801403 - MIR SINE MIR 0 262 14 192 343 151 29 chr4 53487604 53488266 -130800396 - L2 LINE L2 -721 2593 1851 401 313 12 25 chr4 53489105 53489265 -130799397 - MLT1I LTR MaLR -3 406 249 21 57 0 0 chr4 53489464 53489499 -130799163 + AT_rich Low_complexity Low_complexity 1 35 0 1286 178 45 119 chr4 53489840 53489920 -130798742 + MLT1B LTR MaLR 1 85 -305 1611 67 0 14 chr4 53489920 53490128 -130798534 - AluY SINE Alu -4 307 103 1286 178 45 119 chr4 53490128 53490468 -130798194 + MLT1B LTR MaLR 85 390 0 180 329 0 53 chr4 53490477 53490553 -130798109 - L2 LINE L2 -8 3264 3193 879 158 12 18 chr4 53490628 53490792 -130797870 + Tigger1 DNA MER2_type 1 163 -2255 652 101 28 0 chr4 53490773 53490882 -130797780 + Tigger1 DNA MER2_type 2202 2313 -105 * 36411 83 11 11 chr4 53490882 53497019 -130791643 - L1PA6 LINE L1 -10 6144 11 565 202 0 9 chr4 53497030 53497144 -130791518 + Tigger1 DNA MER2_type 2304 2416 -2 739 240 5 5 chr4 53497476 53497672 -130790990 + L1M4 LINE L1 4717 4912 -1234 315 179 105 21 chr4 53497714 53497809 -130790853 + L1ME4a LINE L1 6019 6121 0 625 208 108 84 chr4 53498203 53498453 -130790209 + MIR SINE MIR 5 260 -2 1450 186 129 21 chr4 53498600 53498986 -130789676 - MSTC LTR MaLR 0 428 1 623 271 38 93 chr4 53499156 53499554 -130789108 - MLT1I LTR MaLR 0 409 34 2315 70 0 23 chr4 53499740 53500042 -130788620 - AluSc SINE Alu -14 295 1 403 254 51 62 chr4 53500923 53501100 -130787562 + L1MC5 LINE L1 7739 7913 -48 682 283 45 14 chr4 53501184 53501407 -130787255 - MIR SINE MIR -26 236 7 322 295 6 104 chr4 53502542 53502715 -130785947 - MLT1K LTR MaLR -364 224 69 283 323 82 58 chr4 53504335 53504592 -130784070 + L2 LINE L2 2715 2977 -337 267 348 124 45 chr4 53504692 53504982 -130783680 + L2 LINE L2 2960 3272 0 617 303 58 25 chr4 53505493 53505770 -130782892 - MLT1J LTR MaLR -2 509 224 282 227 0 53 chr4 53505794 53505869 -130782793 - MLT1L LTR MaLR -544 71 1 2472 155 24 35 chr4 53506000 53506039 -130782623 - MLT2C2 LTR ERVL -8 456 418 490 0 46 0 chr4 53506039 53506104 -130782558 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 2472 155 24 35 chr4 53506104 53506314 -130782348 - MLT2C2 LTR ERVL -46 418 207 243 0 0 0 chr4 53506314 53506341 -130782321 + (TC)n Simple_repeat Simple_repeat 2 28 0 234 0 0 0 chr4 53506340 53506366 -130782296 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 2472 155 24 35 chr4 53506341 53506566 -130782096 - MLT2C2 LTR ERVL -257 207 11 234 0 0 0 chr4 53507376 53507402 -130781260 + (TC)n Simple_repeat Simple_repeat 1 26 0 281 302 23 12 chr4 53508552 53508638 -130780024 + MER5A DNA MER1_type 11 97 -92 204 247 52 26 chr4 53508576 53508653 -130780009 - MER5A DNA MER1_type -22 167 89 * 1985 167 0 3 chr4 53509440 53509788 -130778874 - AluSx SINE Alu 0 347 1 956 255 21 0 chr4 53510702 53510937 -130777725 + L1M1 LINE L1 2883 3122 -4443 774 282 58 41 chr4 53511702 53512046 -130776616 + MLT1I LTR MaLR 53 402 -7 688 278 17 0 chr4 53513375 53513548 -130775114 + MIR SINE MIR 3 178 -84 233 213 49 16 chr4 53513579 53513640 -130775022 + MIR SINE MIR 167 229 -33 299 24 0 24 chr4 53514162 53514203 -130774459 + (TTTTC)n Simple_repeat Simple_repeat 2 41 0 978 127 0 0 chr4 53514216 53514358 -130774304 - AluSg/x SINE Alu -34 278 137 1013 239 36 28 chr4 53515656 53515903 -130772759 - MIR SINE MIR 0 262 14 779 242 81 76 chr4 53516040 53516487 -130772175 - MLT1J2 LTR MaLR 0 450 2 446 283 0 0 chr4 53517551 53517657 -130771005 - MIR SINE MIR -1 261 156 996 166 23 0 chr4 53517783 53517958 -130770704 + MLT1B LTR MaLR 1 179 -211 1258 180 0 5 chr4 53517958 53518169 -130770493 + AluJb SINE Alu 1 210 -102 1197 173 51 0 chr4 53518206 53518420 -130770242 + MLT1B LTR MaLR 164 388 -2 980 235 69 15 chr4 53518504 53518764 -130769898 - HsTC2 DNA Tc2 -187 1711 1262 240 206 32 0 chr4 53518758 53518821 -130769841 - HsTC2 DNA Tc2 -1575 323 259 * 199 297 61 88 chr4 53519290 53519438 -130769224 - L2 LINE L2 -1 3271 3128 268 234 291 28 chr4 53519713 53519854 -130768808 - MER5B DNA MER1_type 0 178 1 24 32 0 0 chr4 53521456 53521487 -130767175 + AT_rich Low_complexity Low_complexity 1 31 0 231 311 89 15 chr4 53521500 53521635 -130767027 - L1ME4a LINE L1 -3 6118 5974 23 33 0 0 chr4 53522623 53522653 -130766009 + AT_rich Low_complexity Low_complexity 1 30 0 655 249 68 6 chr4 53524235 53524412 -130764250 - MIR SINE MIR -55 207 20 6211 124 3 0 chr4 53524581 53525645 -130763017 - L1PA15 LINE L1 -6 6159 5104 182 200 22 22 chr4 53525699 53525789 -130762873 + GA-rich Low_complexity Low_complexity 3 92 0 2228 157 62 14 chr4 53526938 53527308 -130761354 - MLT1B LTR MaLR -2 388 1 320 257 72 26 chr4 53527463 53527615 -130761047 - L1MCa LINE L1 -3856 2570 2412 370 292 102 66 chr4 53527827 53528101 -130760561 - MLT1I LTR MaLR -67 342 59 2737 114 6 0 chr4 53528259 53528617 -130760045 + THE1B LTR MaLR 1 360 -4 260 257 54 0 chr4 53528620 53528694 -130759968 - MLT1J LTR MaLR -425 86 9 2297 197 30 26 chr4 53528931 53529428 -130759234 - L1MCa LINE L1 -5355 1071 573 257 170 21 43 chr4 53529429 53529476 -130759186 - L1MCa LINE L1 -5808 618 573 2893 152 118 30 chr4 53529489 53530023 -130758639 - L1MCa LINE L1 -5826 600 20 540 274 101 85 chr4 53530037 53530644 -130758018 - L1MEd LINE L1 -4553 1576 951 3270 183 10 10 chr4 53530644 53531228 -130757434 - L1MB5 LINE L1 -10 6164 5581 540 274 101 85 chr4 53531228 53531678 -130756984 - L1MEd LINE L1 -5178 951 510 604 149 53 0 chr4 53531859 53531953 -130756709 - AluSp SINE Alu -117 196 98 776 213 18 11 chr4 53532179 53532348 -130756314 + MLT1G1 LTR MaLR 412 595 0 878 288 61 54 chr4 53532753 53533194 -130755468 - L2 LINE L2 -13 3300 2857 1418 224 210 27 chr4 53533208 53533684 -130754978 - MLT1G1 LTR MaLR -6 589 1 7066 259 95 18 chr4 53533722 53535909 -130752753 - L2 LINE L2 -497 2817 463 373 244 46 8 chr4 53536575 53536706 -130751956 - L1ME4a LINE L1 -11 6110 5975 567 277 132 23 chr4 53536718 53537115 -130751547 - L1ME4a LINE L1 -195 5926 5486 289 264 164 25 chr4 53539343 53539502 -130749160 - MIR SINE MIR -50 212 32 259 356 52 17 chr4 53539595 53539710 -130748952 - MIR SINE MIR -123 139 21 858 301 15 15 chr4 53539717 53539976 -130748686 - MIR SINE MIR -1 261 3 1955 129 0 39 chr4 53540037 53540347 -130748315 + AluSx SINE Alu 1 298 -14 1123 145 6 17 chr4 53540349 53540528 -130748134 + AluJo/FRAM SINE Alu 136 312 0 404 261 189 7 chr4 53540686 53540839 -130747823 + MER5A DNA MER1_type 9 189 0 774 216 68 0 chr4 53540873 53541035 -130747627 - MER5B DNA MER1_type -5 173 1 390 313 35 0 chr4 53541607 53541722 -130746940 + L2 LINE L2 3193 3311 -2 266 259 141 0 chr4 53541761 53541846 -130746816 - MIR SINE MIR -12 250 154 453 237 93 76 chr4 53541931 53542167 -130746495 - L2 LINE L2 0 3313 3074 1617 207 84 33 chr4 53542178 53542570 -130746092 + MLT2C2 LTR ERVL 1 412 -52 6356 201 43 35 chr4 53542590 53543945 -130744717 + MLT1C-int LTR MaLR 1 1366 -5 1642 224 88 5 chr4 53543961 53544371 -130744291 + MLT1C LTR MaLR 24 467 0 10573 31 2 0 chr4 53544396 53546356 -130742306 - L1PA2 LINE L1 0 6155 4193 280 247 47 24 chr4 53546360 53546445 -130742217 - L2 LINE L2 -297 3016 2930 2851 105 50 29 chr4 53546541 53546960 -130741702 - MSTA LTR MaLR 0 428 1 312 27 0 0 chr4 53546998 53547035 -130741627 + (TG)n Simple_repeat Simple_repeat 2 38 0 432 118 54 0 chr4 53547037 53547130 -130741532 + GA-rich Low_complexity Low_complexity 3 100 0 585 278 77 43 chr4 53547708 53547723 -130740939 + MIR SINE MIR 11 24 -238 1462 233 110 47 chr4 53547723 53548167 -130740495 + MLT2B1 LTR ERVL 1 415 -105 2018 141 0 0 chr4 53548167 53548477 -130740185 + AluSx SINE Alu 1 310 0 258 81 0 0 chr4 53548482 53548519 -130740143 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 1462 233 110 47 chr4 53548519 53548556 -130740106 + MLT2B1 LTR ERVL 418 520 0 585 278 77 43 chr4 53548556 53548774 -130739888 + MIR SINE MIR 24 252 -10 1001 17 0 33 chr4 53548804 53548924 -130739738 + SVA Other Other 1271 1386 0 255 305 48 76 chr4 53548972 53549077 -130739585 + MIR SINE MIR 43 144 -64 843 267 92 3 chr4 53549090 53549352 -130739310 + MER5C DNA MER1_type 1 293 -31 195 0 56 28 chr4 53549352 53549388 -130739274 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 843 267 92 3 chr4 53549388 53549417 -130739245 + MER5C DNA MER1_type 293 318 -6 446 268 153 0 chr4 53549428 53549585 -130739077 - MER5A DNA MER1_type 0 189 9 768 267 117 93 chr4 53550207 53550516 -130738146 - LTR33 LTR ERVL -220 303 1 864 311 82 22 chr4 53551128 53551443 -130737219 + MLT1I LTR MaLR 74 407 -2 245 336 123 27 chr4 53551446 53551738 -130736924 + L2 LINE L2 1889 2208 -1106 415 286 38 8 chr4 53552449 53552606 -130736056 + MER20B DNA MER1_type 56 219 0 279 374 6 28 chr4 53552628 53552807 -130735855 + L2 LINE L2 2430 2604 -710 258 163 20 0 chr4 53552856 53552905 -130735757 + L2 LINE L2 3264 3313 0 398 329 92 82 chr4 53552935 53553486 -130735176 + L2 LINE L2 2688 3260 -12 186 278 56 28 chr4 53553494 53553566 -130735096 - MIR SINE MIR -156 106 33 191 140 40 60 chr4 53553677 53553727 -130734935 - L2 LINE L2 -1 3312 3264 343 280 10 20 chr4 53556268 53556368 -130732294 + MIR SINE MIR 75 173 -89 564 246 126 17 chr4 53556463 53556638 -130732024 + MIR SINE MIR 64 257 -5 240 286 36 12 chr4 53557700 53557784 -130730878 + MIR SINE MIR 77 162 -100 633 138 145 7 chr4 53557797 53557942 -130730720 - MIR SINE MIR -34 228 64 963 218 5 0 chr4 53558426 53558614 -130730048 + MER5A DNA MER1_type 1 189 0 249 310 123 24 chr4 53558623 53558905 -130729757 + L3 LINE CR1 1166 1514 -63 772 268 48 30 chr4 53559260 53559555 -130729107 - MLT1H1 LTR MaLR -255 300 1 183 80 0 0 chr4 53560017 53560042 -130728620 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 3765 191 61 9 chr4 53560068 53561744 -130726918 - L1MB7 LINE L1 0 6184 4425 3624 243 45 7 chr4 53561737 53562906 -130725756 - L1MB7 LINE L1 -2311 3835 2623 * 1007 288 108 44 chr4 53563001 53563549 -130725113 + MLT1K LTR MaLR 2 584 -4 21 36 0 0 chr4 53563619 53563647 -130725015 + AT_rich Low_complexity Low_complexity 1 28 0 194 322 98 44 chr4 53563746 53563951 -130724711 + L2 LINE L2 2364 2579 -735 272 208 19 0 chr4 53563988 53564041 -130724621 - Zaphod DNA AcHobo 0 4031 3978 * 478 339 57 22 chr4 53564037 53564430 -130724232 - MER115 DNA AcHobo -238 455 2 282 259 173 60 chr4 53564923 53565270 -130723392 + MLT1K LTR MaLR 194 579 -9 620 298 107 60 chr4 53566017 53566399 -130722263 - L3 LINE CR1 -13 1564 1165 423 310 31 0 chr4 53566572 53566701 -130721961 + MIR SINE MIR 105 237 -25 915 193 84 129 chr4 53566749 53567153 -130721509 - MLT1B LTR MaLR -4 386 1 320 339 59 25 chr4 53567226 53567462 -130721200 - L2 LINE L2 -413 2901 2658 293 360 56 31 chr4 53568147 53568308 -130720354 + MIR3 SINE MIR 16 180 -28 664 301 78 57 chr4 53568313 53569013 -130719649 - L2 LINE L2 -28 3285 2572 228 312 96 48 chr4 53569920 53570045 -130718617 - L2 LINE L2 0 3272 3142 246 235 280 61 chr4 53570153 53570285 -130718377 - MER5A DNA MER1_type -3 186 26 1621 233 21 19 chr4 53570310 53570684 -130717978 + MER119 DNA MER1_type 5 379 -204 2283 142 3 5 chr4 53570691 53571064 -130717598 - L1PB4 LINE L1 -4 6152 5781 5192 158 15 9 chr4 53571109 53572254 -130716408 - L1PB4 LINE L1 -371 5785 4624 2253 94 0 3 chr4 53572254 53572541 -130716121 + AluSx SINE Alu 24 309 -3 5192 158 15 9 chr4 53572541 53572934 -130715728 - L1PB4 LINE L1 -1532 4624 4235 879 223 5 5 chr4 53572940 53573146 -130715516 + MER119 DNA MER1_type 378 583 0 2215 75 0 7 chr4 53573666 53573959 -130714703 + AluY SINE Alu 1 291 -20 561 238 81 27 chr4 53574913 53575098 -130713564 - MIR SINE MIR -56 206 12 1728 176 42 0 chr4 53575538 53575827 -130712835 + AluJo SINE Alu 1 301 -11 504 175 0 0 chr4 53576066 53576163 -130712499 + GA-rich Low_complexity Low_complexity 4 100 0 21 0 0 0 chr4 53576973 53576994 -130711668 + AT_rich Low_complexity Low_complexity 1 21 0 996 166 5 76 chr4 53576994 53577118 -130711544 - MIR SINE MIR 0 262 155 2293 75 0 0 chr4 53577118 53577446 -130711216 - AluY SINE Alu 0 330 3 996 166 5 76 chr4 53577446 53577530 -130711132 - MIR SINE MIR -107 155 67 236 313 86 43 chr4 53577701 53577864 -130710798 - L2 LINE L2 -382 2932 2763 29 47 0 0 chr4 53577970 53578013 -130710649 + AT_rich Low_complexity Low_complexity 1 43 0 29 78 0 0 chr4 53578131 53578195 -130710467 + AT_rich Low_complexity Low_complexity 1 64 0 378 143 29 0 chr4 53578963 53579033 -130709629 - MLT1F1 LTR MaLR 0 567 496 237 312 101 45 chr4 53579139 53579338 -130709324 - L2 LINE L2 -100 3213 3004 1981 89 117 11 chr4 53581271 53581553 -130707109 + AluSx SINE Alu 1 312 0 285 259 0 0 chr4 53582293 53582351 -130706311 + polypyrimidine Low_complexity Low_complexity 2 59 0 818 151 31 11 chr4 53582355 53582707 -130705955 + CT-rich Low_complexity Low_complexity 1 359 0 5645 150 18 2 chr4 53582731 53583077 -130705585 - L1PB1 LINE L1 -14 6137 5798 330 26 0 0 chr4 53583077 53583116 -130705546 + (TA)n Simple_repeat Simple_repeat 1 39 0 5645 150 18 2 chr4 53583116 53584392 -130704270 - L1PB1 LINE L1 -353 5798 4492 357 109 0 0 chr4 53584642 53584697 -130703965 + (CA)n Simple_repeat Simple_repeat 1 55 0 3405 155 36 23 chr4 53585149 53585794 -130702868 + MER39B LTR ERV1 1 653 0 405 345 6 42 chr4 53586012 53586177 -130702485 + MER5B DNA MER1_type 7 165 -13 266 235 204 8 chr4 53586375 53586507 -130702155 + L1ME4a LINE L1 5945 6102 -19 14487 64 8 1 chr4 53587842 53589846 -130698816 - L1PA6 LINE L1 -1382 4764 2747 7228 50 1 1 chr4 53589846 53591235 -130697427 + L1PA6 LINE L1 4770 6154 0 1067 217 16 43 chr4 53591295 53591553 -130697109 - MLT1A1 LTR MaLR 0 365 115 186 323 202 0 chr4 53591697 53591796 -130696866 - L3 LINE CR1 -89 1488 1370 301 286 54 18 chr4 53591934 53592046 -130696616 + L2 LINE L2 3197 3312 -1 194 250 0 23 chr4 53592071 53592115 -130696547 + MIR3 SINE MIR 114 156 -52 331 295 79 0 chr4 53592147 53592286 -130696376 + MER20B DNA MER1_type 30 179 -604 584 256 24 0 chr4 53592337 53592462 -130696200 + MIR SINE MIR 17 144 -64 1044 282 82 63 chr4 53592841 53593437 -130695225 + L2 LINE L2 2695 3313 0 264 372 67 18 chr4 53593464 53593687 -130694975 + L2 LINE L2 3004 3237 -35 363 323 120 0 chr4 53594089 53594256 -130694406 - MIR SINE MIR -27 235 49 761 226 29 12 chr4 53595134 53595306 -130693356 + MIR SINE MIR 37 210 -52 736 273 72 0 chr4 53595545 53595739 -130692923 + MIR SINE MIR 9 216 -46 422 256 22 66 chr4 53596695 53596832 -130691830 + MIR SINE MIR 2 132 -130 1264 196 36 73 chr4 53596832 53597295 -130691367 + MLT1B LTR MaLR 1 388 -2 499 250 0 16 chr4 53597298 53597426 -130691236 + MIR SINE MIR 129 254 -8 1074 286 62 20 chr4 53597568 53598016 -130690646 - MLT1J LTR MaLR -8 503 37 700 334 36 5 chr4 53600140 53600586 -130688076 - L1ME4a LINE L1 -206 5915 5456 497 112 0 61 chr4 53600980 53601078 -130687584 - MER33 DNA MER1_type 0 324 233 5712 160 16 33 chr4 53601082 53601836 -130686826 + L1MA10 LINE L1 4726 5491 -843 1859 183 0 0 chr4 53601836 53602147 -130686515 + AluJo SINE Alu 1 311 -1 5712 160 16 33 chr4 53602147 53603013 -130685649 + L1MA10 LINE L1 5491 6326 -8 944 195 33 17 chr4 53603013 53603254 -130685408 - MER33 DNA MER1_type -79 245 1 236 250 47 0 chr4 53603477 53603541 -130685121 + MER5A DNA MER1_type 75 141 -48 183 240 70 62 chr4 53603585 53603714 -130684948 - MIR3 SINE MIR -77 131 2 1608 160 12 50 chr4 53604653 53604972 -130683690 - AluJo SINE Alu -5 307 1 205 206 14 41 chr4 53605212 53605285 -130683377 + (TA)n Simple_repeat Simple_repeat 2 72 0 301 167 0 19 chr4 53605294 53605348 -130683314 - L2 LINE L2 -2 3311 3259 463 119 24 0 chr4 53655579 53655663 -130632999 - L1MA10 LINE L1 0 6334 6249 180 258 48 16 chr4 53655755 53655817 -130632845 - L2 LINE L2 -1045 2269 2206 * 183 298 21 0 chr4 53655803 53655850 -130632812 + MIR SINE MIR 8 55 -207 217 324 0 15 chr4 53655959 53656027 -130632635 + L2 LINE L2 3187 3253 -19 249 239 84 14 chr4 53657722 53657793 -130630869 - MIR SINE MIR -4 258 183 1984 132 7 0 chr4 53657810 53658098 -130630564 - AluJb SINE Alu -12 300 11 475 237 10 5 chr4 53658116 53658264 -130630398 + L1MA9 LINE L1 6141 6274 -38 1863 159 6 32 chr4 53659939 53660254 -130628408 + AluJb SINE Alu 1 307 -5 458 222 8 180 chr4 53661411 53661650 -130627012 - MIR SINE MIR -1 261 64 237 275 43 0 chr4 53661974 53662043 -130626619 + L2 LINE L2 2596 2667 -647 608 302 103 53 chr4 53662083 53662537 -130626125 + L2 LINE L2 2831 3307 -6 438 279 50 45 chr4 53662535 53662714 -130625948 + MIR SINE MIR 42 221 -41 * 448 282 152 48 chr4 53663765 53664141 -130624521 + L2 LINE L2 2555 2969 -345 227 333 69 10 chr4 53664394 53664496 -130624166 - MIR SINE MIR -5 257 150 407 294 73 65 chr4 53664507 53664663 -130623999 + MIR SINE MIR 8 168 -94 2676 45 0 0 chr4 53664663 53664974 -130623688 + AluY SINE Alu 1 311 0 407 294 73 65 chr4 53664974 53665062 -130623600 + MIR SINE MIR 168 254 -8 471 211 0 19 chr4 53665087 53665191 -130623471 - MIR SINE MIR -146 116 15 1677 302 77 22 chr4 53666236 53667198 -130621464 - L2 LINE L2 0 3313 2246 1834 102 83 50 chr4 53667210 53667571 -130621091 - THE1C LTR MaLR 0 375 3 237 215 231 0 chr4 53667582 53667647 -130621015 - MIR SINE MIR -112 150 71 * 286 312 189 16 chr4 53667646 53668049 -130620613 + L2 LINE L2 2790 3259 -54 1639 130 52 45 chr4 53668109 53668439 -130620223 - MER44D DNA MER2_type 0 609 8 446 245 124 25 chr4 53669162 53669403 -130619259 + MLT1H1 LTR MaLR 291 555 0 494 319 25 13 chr4 53669518 53669753 -130618909 + MLT1H1-int LTR MaLR 303 540 -831 1763 265 79 31 chr4 53670223 53671099 -130617563 + L1M4 LINE L1 3852 4769 -1377 376 227 0 0 chr4 53671114 53671202 -130617460 + L1ME3A LINE L1 6075 6162 -8 267 231 0 66 chr4 53671424 53671545 -130617117 + L1MC4 LINE L1 7928 8040 -2 273 222 93 0 chr4 53671869 53671923 -130616739 - L2 LINE L2 -21 3292 3234 703 239 5 0 chr4 53672252 53672440 -130616222 + L1PB1 LINE L1 6 194 -6669 13617 190 26 21 chr4 53672440 53673148 -130615514 + L1PB1 LINE L1 903 1606 -5261 2000 147 0 3 chr4 53673148 53673447 -130615215 + AluSq SINE Alu 1 298 -15 13617 190 26 21 chr4 53673447 53678463 -130610199 + L1PB1 LINE L1 1606 6867 0 1347 187 143 58 chr4 53678538 53678965 -130609697 + MLT1C LTR MaLR 3 465 -2 487 303 0 0 chr4 53678969 53679091 -130609571 - MIR SINE MIR -118 144 23 1307 294 47 39 chr4 53679096 53679633 -130609029 + L2 LINE L2 2239 2779 -535 274 263 13 0 chr4 53679649 53679725 -130608937 + LTR67 LTR ERVL 2 78 -479 588 188 8 0 chr4 53679845 53679962 -130608700 + MLT2B2 LTR ERVL 1 118 -397 467 294 84 62 chr4 53680194 53680657 -130608005 + L2 LINE L2 2784 3250 -63 2317 55 34 3 chr4 53681245 53681538 -130607124 + AluY SINE Alu 1 302 -9 296 307 11 28 chr4 53681570 53681746 -130606916 + GA-rich Low_complexity Low_complexity 3 175 0 808 231 67 34 chr4 53681943 53682151 -130606511 - MIR SINE MIR -22 240 26 239 163 23 0 chr4 53682167 53682210 -130606452 - L2 LINE L2 -6 3307 3264 * 319 332 45 82 chr4 53682209 53682453 -130606209 + L2 LINE L2 3036 3270 -2 202 361 0 21 chr4 53683091 53683188 -130605474 - MIR SINE MIR -59 149 55 190 167 0 0 chr4 53683722 53683752 -130604910 - L2 LINE L2 -20 3293 3264 4391 157 33 11 chr4 53686530 53687020 -130601642 - L1PB4 LINE L1 0 6156 5637 1734 175 17 3 chr4 53687020 53687311 -130601351 - AluJb SINE Alu -17 295 1 4391 157 33 11 chr4 53687311 53687704 -130600958 - L1PB4 LINE L1 -519 5637 5254 226 339 0 16 chr4 53687705 53687767 -130600895 - MIR SINE MIR -112 96 36 233 221 15 0 chr4 53688747 53688815 -130599847 + L1MB8 LINE L1 5829 5897 -1911 424 117 26 0 chr4 53688864 53688941 -130599721 + (TA)n Simple_repeat Simple_repeat 2 80 0 2240 132 40 19 chr4 53688971 53689395 -130599267 - LTR56 LTR ERV1 0 445 13 23 68 0 0 chr4 53689533 53689577 -130599085 + AT_rich Low_complexity Low_complexity 1 44 0 461 266 93 0 chr4 53690013 53690152 -130598510 + MIR SINE MIR 97 248 -14 1912 137 67 6 chr4 53690222 53690537 -130598125 + MER1B DNA MER1_type 4 337 0 882 212 74 5 chr4 53690884 53691087 -130597575 + MIR SINE MIR 2 218 -44 247 257 93 14 chr4 53691135 53691275 -130597387 - MER117 DNA MER1_type -35 162 12 900 146 8 0 chr4 53692259 53692389 -130596273 - FLAM_C SINE Alu -12 131 1 610 352 31 0 chr4 53692500 53692727 -130595935 + MIR SINE MIR 29 262 0 494 247 12 29 chr4 53692937 53693107 -130595555 + L1MB8 LINE L1 6010 6176 -2 796 250 47 54 chr4 53693125 53693714 -130594948 + L1MEd LINE L1 985 1622 -4688 592 208 125 0 chr4 53693832 53694000 -130594662 + MER53 DNA DNA 1 189 0 203 286 125 0 chr4 53694230 53694286 -130594376 - L2 LINE L2 -1 3312 3250 2502 141 58 16 chr4 53694422 53694870 -130593792 + MLT1C LTR MaLR 1 467 0 206 254 179 104 chr4 53696390 53696524 -130592138 - MIR SINE MIR -80 182 39 21 0 0 0 chr4 53697602 53697623 -130591039 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr4 53698000 53698024 -130590638 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 184 237 42 110 chr4 53701674 53701771 -130586891 - MIR SINE MIR -50 212 124 189 338 44 0 chr4 53701771 53701839 -130586823 + MIR SINE MIR 2 72 -190 579 265 111 68 chr4 53701854 53702250 -130586412 + MLT1J LTR MaLR 5 417 -94 270 273 58 58 chr4 53702298 53702437 -130586225 + MIR SINE MIR 92 230 -32 213 39 0 0 chr4 53702653 53702679 -130585983 + (T)n Simple_repeat Simple_repeat 1 26 0 1526 213 44 73 chr4 53702770 53703292 -130585370 + Charlie4a DNA MER1_type 2 508 0 382 326 112 21 chr4 53703610 53703797 -130584865 - MIR SINE MIR -28 234 31 196 297 57 75 chr4 53704182 53704334 -130584328 + MIR SINE MIR 40 191 -58 261 75 0 0 chr4 53705975 53706015 -130582647 + (A)n Simple_repeat Simple_repeat 1 40 0 180 269 19 0 chr4 53706250 53706302 -130582360 + L3 LINE CR1 547 599 -978 406 183 43 11 chr4 53711168 53711261 -130577401 + L1ME4a LINE L1 6026 6121 0 24 77 0 0 chr4 53711614 53711666 -130576996 + AT_rich Low_complexity Low_complexity 1 52 0 250 252 90 36 chr4 53712443 53712554 -130576108 + MIR SINE MIR 119 235 -27 2275 85 0 0 chr4 53712642 53712944 -130575718 + AluSx SINE Alu 1 302 0 1619 92 60 0 chr4 53713175 53713392 -130575270 - MER30 DNA MER1_type 0 230 1 267 274 179 28 chr4 53713392 53713498 -130575164 + L2 LINE L2 3189 3310 -3 220 273 0 0 chr4 53714583 53714638 -130574024 + L3 LINE CR1 1307 1361 -216 311 262 26 0 chr4 53715144 53715239 -130573423 + L1MC4 LINE L1 6614 6703 -1339 594 299 51 0 chr4 53715555 53715752 -130572910 + MIR SINE MIR 56 262 0 1905 116 32 18 chr4 53715755 53716039 -130572623 + AluSx SINE Alu 2 289 -23 322 268 115 84 chr4 53716733 53716994 -130571668 + L2 LINE L2 3003 3271 -1 317 234 45 36 chr4 53717367 53717478 -130571184 + L1ME4a LINE L1 5965 6076 -45 266 366 65 0 chr4 53717788 53717911 -130570751 - MER5A DNA MER1_type 0 189 59 245 313 94 31 chr4 53717837 53717933 -130570729 + MER5A DNA MER1_type 63 164 -25 * 561 255 137 0 chr4 53717933 53718086 -130570576 + MER96 DNA MER1_type 1 174 -1 1203 213 61 70 chr4 53719374 53719666 -130568996 - MER58B DNA MER1_type -2080 340 50 1929 128 66 0 chr4 53719666 53719955 -130568707 + AluSg SINE Alu 1 308 -2 1203 213 61 70 chr4 53719955 53720005 -130568657 - MER58B DNA MER1_type -2370 50 1 24 0 0 0 chr4 53721509 53721533 -130567129 + AT_rich Low_complexity Low_complexity 1 24 0 2032 164 68 36 chr4 53722282 53722697 -130565965 + MSTB1 LTR MaLR 1 428 -4 520 284 70 25 chr4 53726651 53726852 -130561810 - MIR SINE MIR -6 256 47 310 278 22 0 chr4 53727199 53727289 -130561373 + MER94 DNA DNA 29 120 -14 1598 146 0 94 chr4 53730094 53730424 -130558238 + AluJo SINE Alu 1 299 -13 584 198 62 28 chr4 53732331 53732492 -130556170 + MIR SINE MIR 69 234 -28 795 208 149 27 chr4 53732531 53732752 -130555910 + MIR SINE MIR 7 254 -8 24 0 0 0 chr4 53733769 53733793 -130554869 + AT_rich Low_complexity Low_complexity 1 24 0 209 238 0 0 chr4 53734057 53734099 -130554563 + L2 LINE L2 3223 3264 -8 2294 149 37 77 chr4 53734530 53735073 -130553589 + L1MB4 LINE L1 5657 6177 -3 1871 126 0 11 chr4 53737313 53737583 -130551079 - AluSx SINE Alu -10 302 36 1866 175 0 0 chr4 53737929 53738226 -130550436 + AluJb SINE Alu 1 297 -15 199 309 135 16 chr4 53739134 53739438 -130549224 - L2 LINE L2 -581 2733 2394 420 39 0 0 chr4 53739728 53739779 -130548883 + MADE1 DNA Mariner 3 53 -27 234 0 0 0 chr4 53740575 53740601 -130548061 + (CACCC)n Simple_repeat Simple_repeat 5 30 0 896 110 16 0 chr4 53741292 53741419 -130547243 - BC200 scRNA scRNA -71 129 1 232 293 0 17 chr4 53741513 53741571 -130547091 + MIR SINE MIR 92 148 -60 358 204 63 33 chr4 53741583 53741707 -130546955 + L1MA4 LINE L1 6134 6264 -38 2161 123 0 3 chr4 53741722 53742023 -130546639 + AluSx SINE Alu 1 300 -12 2053 144 10 13 chr4 53742044 53742356 -130546306 + AluSx SINE Alu 1 311 -1 1958 159 7 0 chr4 53742386 53742688 -130545974 + AluJb SINE Alu 1 304 -8 201 250 67 0 chr4 53742688 53742738 -130545924 + L2 LINE L2 3216 3272 0 564 99 49 0 chr4 53742782 53742863 -130545799 - AluSg/x SINE Alu -11 299 215 1137 118 0 0 chr4 53742863 53743016 -130545646 - AluSq SINE Alu -160 153 1 2277 88 3 10 chr4 53744082 53744388 -130544274 + AluSq SINE Alu 1 304 -9 209 294 0 0 chr4 53744510 53744561 -130544101 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 2424 158 32 2 chr4 53744587 53744997 -130543665 - L1MB4 LINE L1 -2 6178 5757 728 151 190 0 chr4 53745827 53745998 -130542664 + L1MC4 LINE L1 7849 7994 -1 218 277 61 46 chr4 53746092 53746238 -130542424 + MIR3 SINE MIR 10 155 -70 657 69 0 0 chr4 53746396 53746483 -130542179 + (GGAA)n Simple_repeat Simple_repeat 1 87 0 240 255 0 0 chr4 53747489 53747540 -130541122 + G-rich Low_complexity Low_complexity 3 53 0 228 323 85 71 chr4 53747626 53748166 -130540496 - L2 LINE L2 0 3272 2688 1134 128 33 6 chr4 53748428 53748608 -130540054 - MER5A DNA MER1_type 0 189 5 1645 110 0 5 chr4 53750703 53750922 -130537740 + AluSx SINE Alu 1 218 -94 195 42 0 0 chr4 53750937 53750961 -130537701 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 296 299 97 75 chr4 53751434 53751889 -130536773 + HAL1b LINE L1 80 544 -804 271 297 65 26 chr4 53751977 53752132 -130536530 + HAL1b LINE L1 673 833 -515 1140 239 186 19 chr4 53752459 53752998 -130535664 + L1MC5 LINE L1 7299 7927 -34 1174 153 141 4 chr4 53753827 53754255 -130534407 - MER39 LTR ERV1 -158 549 1 272 284 0 40 chr4 53755114 53755188 -130533474 + L2 LINE L2 3187 3257 -56 2404 48 0 0 chr4 53758197 53758516 -130530146 + AluSc SINE Alu 2 278 -31 403 257 15 29 chr4 53758588 53758724 -130529938 - L3b LINE CR1 -324 1259 1126 2310 171 100 2 chr4 53759428 53759877 -130528785 + L1MB2 LINE L1 5679 6171 0 1546 138 97 26 chr4 53759886 53760197 -130528465 + AluJo SINE Alu 1 312 0 708 258 62 18 chr4 53761349 53761574 -130527088 - MIR SINE MIR -23 239 5 2309 107 0 0 chr4 53761901 53762201 -130526461 + AluSx SINE Alu 1 300 -12 369 206 29 5 chr4 53762290 53762428 -130526234 - MIR SINE MIR 0 262 58 337 258 84 52 chr4 53762670 53762825 -130525837 - Charlie8 DNA MER1_type -2256 161 2 296 221 15 0 chr4 53763876 53763944 -130524718 + L2 LINE L2 3241 3309 -4 320 213 83 28 chr4 53764047 53764155 -130524507 + MIR SINE MIR 121 234 -28 310 321 7 58 chr4 53768253 53768390 -130520272 - L2 LINE L2 0 3272 3143 244 299 215 0 chr4 53768793 53768900 -130519762 - L2 LINE L2 -5 3267 3138 281 146 21 0 chr4 53769252 53769300 -130519362 + MER3 DNA MER1_type 1 49 -160 908 260 83 92 chr4 53769399 53769953 -130518709 - MLT1K LTR MaLR -4 584 36 915 224 146 48 chr4 53770013 53770491 -130518171 - L1ME4a LINE L1 -5 6116 5592 243 353 85 33 chr4 53770655 53771335 -130517327 - L2 LINE L2 -5 3267 2549 2245 73 55 14 chr4 53771483 53771772 -130516890 - AluY SINE Alu -10 301 1 2014 138 23 7 chr4 53771775 53772079 -130516583 - AluJo SINE Alu -3 309 1 2101 138 3 0 chr4 53772266 53772563 -130516099 + AluSx SINE Alu 1 298 -14 247 286 0 0 chr4 53772629 53772699 -130515963 - L2 LINE L2 -1313 2001 1932 540 227 0 0 chr4 53772749 53772859 -130515803 - MIR SINE MIR -45 217 108 257 172 4 2 chr4 53773215 53773462 -130515200 + AluJo SINE Alu 6 302 0 2169 99 3 26 chr4 53774277 53774613 -130514049 - AluSp SINE Alu 0 313 1 2262 118 0 0 chr4 53774811 53775107 -130513555 - AluSg SINE Alu -4 306 11 325 224 0 0 chr4 53775386 53775444 -130513218 + MER94 DNA DNA 1 58 -76 2330 104 7 0 chr4 53775700 53776007 -130512655 + AluSg SINE Alu 1 309 -1 719 289 14 0 chr4 53776191 53776409 -130512253 - MIR SINE MIR 0 262 42 675 184 0 0 chr4 53776414 53776547 -130512115 + FLAM_A SINE Alu 13 145 0 2383 99 3 0 chr4 53776549 53776852 -130511810 + AluSq SINE Alu 1 304 -9 648 0 0 0 chr4 53776852 53776924 -130511738 + (AATAG)n Simple_repeat Simple_repeat 4 75 0 869 193 81 72 chr4 53777120 53777452 -130511210 + L1MC5 LINE L1 7581 7915 -46 328 203 31 70 chr4 53777561 53777689 -130510973 + MIR3 SINE MIR 84 206 -2 2008 119 3 72 chr4 53777713 53778048 -130510614 + AluSx SINE Alu 1 312 0 946 181 5 27 chr4 53778169 53778357 -130510305 + MIR SINE MIR 67 250 -12 2342 106 0 0 chr4 53779126 53779429 -130509233 + AluSq SINE Alu 1 303 -10 233 253 107 0 chr4 53780153 53780228 -130508434 + L2 LINE L2 3230 3312 -1 1202 146 9 52 chr4 53780994 53781206 -130507456 + MER20 DNA MER1_type 17 219 0 469 301 47 21 chr4 53781206 53781399 -130507263 - MIR SINE MIR -55 207 10 23 54 0 0 chr4 53782472 53782509 -130506153 + AT_rich Low_complexity Low_complexity 1 37 0 206 344 8 69 chr4 53782706 53782789 -130505873 + L2 LINE L2 2644 2730 -584 1713 193 0 10 chr4 53782789 53783090 -130505572 + AluJo SINE Alu 3 300 -12 206 344 8 69 chr4 53783090 53783253 -130505409 + L2 LINE L2 2730 2875 -439 2424 86 0 10 chr4 53783469 53783783 -130504879 + AluY SINE Alu 1 311 0 2246 96 0 0 chr4 53784500 53784791 -130503871 - AluSc SINE Alu -18 291 1 540 289 60 69 chr4 53784979 53785297 -130503365 - MER102b DNA MER1_type -22 319 5 271 296 128 16 chr4 53785304 53785341 -130503321 - MIR3 SINE MIR -40 168 137 1512 206 82 90 chr4 53785341 53785876 -130502786 + LTR26B LTR ERV1 1 531 0 271 296 128 16 chr4 53785876 53785963 -130502699 - MIR3 SINE MIR -71 137 30 231 340 107 10 chr4 53786181 53786284 -130502378 + MER5A DNA MER1_type 54 166 -23 189 107 0 0 chr4 53787095 53787123 -130501539 + (ATG)n Simple_repeat Simple_repeat 3 30 0 633 269 82 12 chr4 53787640 53787885 -130500777 - Charlie8 DNA MER1_type -2154 263 2 248 254 55 0 chr4 53787980 53788035 -130500627 - L2 LINE L2 -27 3286 3229 1704 189 3 10 chr4 53788189 53788496 -130500166 + AluJo SINE Alu 1 305 -7 27 0 0 0 chr4 53788501 53788528 -130500134 + AT_rich Low_complexity Low_complexity 1 27 0 492 330 112 33 chr4 53788578 53789306 -130499356 - L2 LINE L2 -1 3312 2529 23 0 0 0 chr4 53789646 53789669 -130498993 + AT_rich Low_complexity Low_complexity 1 23 0 2362 109 0 3 chr4 53790221 53790533 -130498129 - AluSx SINE Alu -1 311 1 337 274 18 4 chr4 53791015 53791164 -130497498 - MIR SINE MIR -22 240 18 3543 118 80 83 chr4 53791167 53792432 -130496230 - pTR5 LTR ERV1 0 2438 732 328 271 172 0 chr4 53792654 53792776 -130495886 - MIR SINE MIR -74 188 46 606 289 102 12 chr4 53792888 53793294 -130495368 + LTR16A LTR ERVL 1 450 0 183 333 133 7 chr4 53793375 53793525 -130495137 - MIR SINE MIR -21 241 73 2122 181 138 2 chr4 53793563 53794005 -130494657 + MLT1D LTR MaLR 1 502 -3 1797 130 48 0 chr4 53794744 53795068 -130493594 + AluSx SINE Alu 1 337 0 1683 187 20 7 chr4 53795482 53795787 -130492875 + AluJb SINE Alu 3 311 -1 200 184 0 61 chr4 53795864 53795913 -130492749 - MIR SINE MIR -97 111 66 847 215 123 5 chr4 53795985 53796204 -130492458 + MIR SINE MIR 15 259 -3 561 301 60 12 chr4 53796294 53796543 -130492119 + MIR SINE MIR 2 262 0 192 243 0 0 chr4 53796750 53796787 -130491875 - MIR SINE MIR -112 96 60 4677 140 49 77 chr4 53797051 53797639 -130491023 + MER21A LTR ERV1 1 554 -377 754 138 0 16 chr4 53797639 53797783 -130490879 + FLAM_C SINE Alu 1 142 0 4677 140 49 77 chr4 53797783 53798151 -130490511 + MER21A LTR ERV1 554 931 0 2269 119 0 6 chr4 53799351 53799663 -130488999 + AluSx SINE Alu 3 312 0 2126 133 0 7 chr4 53799714 53800023 -130488639 + AluSx SINE Alu 6 312 0 357 241 37 0 chr4 53800345 53800453 -130488209 + L3b LINE CR1 1243 1354 -229 201 74 0 0 chr4 53800551 53800578 -130488084 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 1928 257 105 27 chr4 53800923 53801879 -130486783 - L2 LINE L2 0 3313 2249 2173 102 0 0 chr4 53801879 53802276 -130486386 + AluSq SINE Alu 1 397 0 1928 257 105 27 chr4 53802276 53802445 -130486217 - L2 LINE L2 -1064 2249 2095 569 286 63 17 chr4 53802456 53802806 -130485856 + HAL1 LINE L1 2070 2435 -72 2220 99 0 45 chr4 53802807 53803119 -130485543 - AluSq SINE Alu -15 298 1 1343 222 3 48 chr4 53803155 53803470 -130485192 + AluJb SINE Alu 1 301 -11 2383 141 15 7 chr4 53803511 53803916 -130484746 + L1MB7 LINE L1 5758 6165 -19 27 0 0 0 chr4 53803968 53803995 -130484667 + AT_rich Low_complexity Low_complexity 1 27 0 4922 199 23 15 chr4 53804258 53805243 -130483419 - MER45B DNA AcHobo -44 996 4 1742 150 78 40 chr4 53805566 53805777 -130482885 - MLT1A1 LTR MaLR -5 360 130 2354 106 0 0 chr4 53805777 53806079 -130482583 - AluSx SINE Alu -10 302 1 1742 150 78 40 chr4 53806079 53806213 -130482449 - MLT1A1 LTR MaLR -235 130 2 22 0 0 0 chr4 53807438 53807460 -130481202 + AT_rich Low_complexity Low_complexity 1 22 0 1709 180 71 52 chr4 53807810 53808177 -130480485 - MLT1A2 LTR MaLR 0 374 1 2928 7 0 0 chr4 53808193 53808503 -130480159 - AluYa8 SINE Alu 0 310 1 205 204 56 0 chr4 53808691 53808745 -130479917 - MIR SINE MIR -32 230 174 572 287 19 34 chr4 53808852 53809061 -130479601 + MIR SINE MIR 51 256 -6 234 282 0 28 chr4 53810565 53810636 -130478026 - MIR3 SINE MIR -15 193 125 195 42 0 0 chr4 53810959 53810983 -130477679 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2065 112 11 0 chr4 53810985 53811262 -130477400 - AluSx SINE Alu -32 280 1 196 171 0 49 chr4 53812264 53812305 -130476357 - L2 LINE L2 -96 3217 3179 529 205 97 151 chr4 53812309 53812515 -130476147 - MLT1C LTR MaLR -154 313 130 1520 172 19 0 chr4 53812515 53812783 -130475879 + AluJb SINE Alu 26 298 -14 529 205 97 151 chr4 53812783 53812907 -130475755 - MLT1C LTR MaLR -337 130 1 520 278 53 74 chr4 53812911 53813089 -130475573 - MIR SINE MIR -68 140 8 2047 115 0 14 chr4 53813593 53813911 -130474751 - AluSx SINE Alu 0 314 1 1958 125 0 4 chr4 53814441 53814762 -130473900 + AluSg SINE Alu 1 320 0 253 283 153 35 chr4 53814775 53815089 -130473573 + L1MC4a LINE L1 5894 6244 -1564 260 139 23 0 chr4 53815126 53815169 -130473493 - MER81 DNA DNA -1 113 70 1637 248 38 61 chr4 53815434 53816123 -130472539 + L1MC5 LINE L1 6565 7256 -723 513 259 14 0 chr4 53816232 53816375 -130472287 - L1MC4 LINE L1 -145 7897 7753 2359 204 18 63 chr4 53816376 53816668 -130471994 - LTR40a LTR ERVL 0 519 261 2156 131 0 6 chr4 53816668 53816981 -130471681 - L1PA13 LINE L1 -5 6158 5848 2359 204 18 63 chr4 53816981 53817231 -130471431 - LTR40a LTR ERVL -258 261 1 281 286 181 29 chr4 53817382 53817592 -130471070 - L2 LINE L2 -411 2903 2662 2362 79 0 0 chr4 53818523 53818813 -130469849 - AluY SINE Alu -17 294 5 2885 121 48 0 chr4 53819180 53819594 -130469068 + MER57B LTR ERV1 1 434 0 2013 141 18 7 chr4 53819594 53820179 -130468483 + MER57B-int LTR ERV1 1 672 -6865 * 3432 142 42 7 chr4 53820176 53820913 -130467749 + MER57B-int LTR ERV1 288 1136 -4810 2042 155 59 6 chr4 53820903 53821418 -130467244 + MER57B-int LTR ERV1 1371 2017 -3929 * 307 146 55 0 chr4 53821414 53821469 -130467193 + MER57B-int LTR ERV1 2167 2224 -3722 * 1423 113 42 21 chr4 53821446 53821686 -130466976 + MER57B-int LTR ERV1 3336 3580 -3957 * 5972 156 55 36 chr4 53821660 53822088 -130466574 + MER57B-int LTR ERV1 2166 2584 -4323 2081 115 4 0 chr4 53822088 53822418 -130466244 + AluSg SINE Alu 1 331 0 5972 156 55 36 chr4 53822418 53823416 -130465246 + MER57B-int LTR ERV1 2584 5205 -1702 12690 94 113 61 chr4 53823421 53825538 -130463124 + MER57B-int LTR ERV1 5309 7535 -2 2917 141 21 0 chr4 53825540 53825965 -130462697 + MER57B LTR ERV1 1 434 0 1043 121 0 0 chr4 53826079 53826262 -130462400 - AluSg/x SINE Alu 0 326 144 1490 97 10 0 chr4 53826262 53826458 -130462204 - MER57-int LTR ERV1 -400 7137 6940 813 119 17 0 chr4 53826464 53826582 -130462080 - AluSg1 SINE Alu -189 120 1 2207 110 3 0 chr4 53826586 53826876 -130461786 - AluSq SINE Alu -22 291 1 704 144 106 31 chr4 53827048 53827208 -130461454 + MER96B DNA MER1_type? 1 172 -245 883 173 6 6 chr4 53827213 53827369 -130461293 + L1MA10 LINE L1 6163 6318 -16 5384 109 50 14 chr4 53827687 53828525 -130460137 - L1MA9 LINE L1 0 6312 5445 1146 152 23 10 chr4 53828526 53828770 -130459892 + L1MA9 LINE L1 5223 5469 -743 274 310 10 10 chr4 53828804 53828904 -130459758 + LTR16A LTR ERVL 336 435 -15 328 272 34 30 chr4 53828919 53829105 -130459557 - L1M3 LINE L1 -665 5506 5319 809 169 0 22 chr4 53829458 53829594 -130459068 - FLAM_C SINE Alu 0 133 1 334 304 78 106 chr4 53829821 53830033 -130458629 + L2 LINE L2 1751 1967 -1346 2091 108 0 54 chr4 53830033 53830348 -130458314 - AluSx SINE Alu -14 298 1 334 304 78 106 chr4 53830348 53830989 -130457673 + L2 LINE L2 1967 3235 -78 1507 136 20 99 chr4 53831183 53831535 -130457127 - MER33 DNA MER1_type 0 324 1 2343 60 11 0 chr4 53831573 53831857 -130456805 - L1PA13 LINE L1 0 6163 5877 291 344 41 25 chr4 53832703 53832825 -130455837 + L2 LINE L2 3148 3271 -1 27 0 0 0 chr4 53833031 53833058 -130455604 + AT_rich Low_complexity Low_complexity 1 27 0 2292 93 7 3 chr4 53834496 53834797 -130453865 + AluSx SINE Alu 1 302 -10 293 266 44 18 chr4 53835113 53835226 -130453436 + MIR SINE MIR 147 262 0 300 310 11 0 chr4 53835991 53836078 -130452584 - MIR SINE MIR -115 147 60 30 59 0 0 chr4 53836573 53836624 -130452038 + AT_rich Low_complexity Low_complexity 1 51 0 345 265 68 34 chr4 53836850 53836997 -130451665 + MIR SINE MIR 51 202 -60 272 284 51 54 chr4 53837059 53837283 -130451379 - L3 LINE CR1 -50 1527 1250 3937 148 10 7 chr4 53837624 53838233 -130450429 + MER50 LTR ERV1 1 611 -123 326 157 0 0 chr4 53838772 53838823 -130449839 + MER50 LTR ERV1 661 711 -23 343 354 39 0 chr4 53838846 53838973 -130449689 - MIR SINE MIR -112 150 19 557 320 101 5 chr4 53839450 53839669 -130448993 + MIR SINE MIR 2 241 -21 1180 132 22 0 chr4 53840311 53840493 -130448169 + AluSp SINE Alu 120 305 -8 609 209 13 57 chr4 53840791 53840949 -130447713 - L2 LINE L2 0 3313 3163 207 69 0 0 chr4 53841200 53841229 -130447433 + (CAAAAA)n Simple_repeat Simple_repeat 3 31 0 21 36 0 0 chr4 53842600 53842628 -130446034 + AT_rich Low_complexity Low_complexity 1 28 0 2234 112 0 0 chr4 53842899 53843194 -130445468 - AluSx SINE Alu -17 295 1 1143 122 61 0 chr4 53843491 53843671 -130444991 + Tigger4(Zombi) DNA MER2_type 1 191 -2540 * 4323 119 24 15 chr4 53843667 53844330 -130444332 + Tigger4(Zombi) DNA MER2_type 2063 2731 0 2008 127 27 0 chr4 53844536 53844828 -130443834 - AluSx SINE Alu -11 301 2 607 263 80 32 chr4 53844864 53845176 -130443486 - L1MC4a LINE L1 -1713 6095 5769 1241 229 53 0 chr4 53845221 53845522 -130443140 - L1ME2 LINE L1 -9 6155 5839 204 313 62 12 chr4 53845708 53845788 -130442874 + L3 LINE CR1 902 985 -592 362 330 45 10 chr4 53846445 53846645 -130442017 - MLT1L LTR MaLR 0 615 409 2112 109 0 3 chr4 53847022 53847327 -130441335 + AluSx SINE Alu 1 304 0 27 49 0 0 chr4 53847539 53847580 -130441082 + AT_rich Low_complexity Low_complexity 1 41 0 443 224 75 34 chr4 53847817 53847964 -130440698 + L1ME4a LINE L1 5963 6115 -6 392 185 76 42 chr4 53848361 53848480 -130440182 + Charlie8 DNA MER1_type 33 155 -2262 896 279 17 0 chr4 53848650 53848890 -130439772 + MIR SINE MIR 18 261 -1 400 280 61 18 chr4 53849074 53849221 -130439441 + MIR SINE MIR 11 150 -58 479 329 23 51 chr4 53849256 53849606 -130439056 - LTR16C LTR ERVL 0 491 152 1386 128 50 37 chr4 53849994 53850236 -130438426 - MSTA LTR MaLR -182 246 2 641 134 0 0 chr4 53850236 53850333 -130438329 + L1MB5 LINE L1 6072 6168 -6 1712 171 3 17 chr4 53851422 53851721 -130436941 + AluJo SINE Alu 6 300 -12 375 236 133 25 chr4 53851783 53851986 -130436676 - L1ME4a LINE L1 -2 6119 5895 483 274 13 39 chr4 53853000 53853153 -130435509 - L3b LINE CR1 -323 1260 1112 609 43 21 21 chr4 53853725 53853819 -130434843 + (TCTA)n Simple_repeat Simple_repeat 3 96 0 214 171 0 0 chr4 53853942 53853977 -130434685 + CT-rich Low_complexity Low_complexity 3 37 0 2001 132 0 0 chr4 53854643 53854930 -130433732 - AluSq SINE Alu -8 305 19 204 339 0 0 chr4 53855067 53855126 -130433536 + L2 LINE L2 3214 3272 0 1332 278 16 24 chr4 53855350 53855800 -130432862 + MER20B DNA MER1_type 201 646 -137 325 93 0 0 chr4 53855799 53855842 -130432820 - MADE1 DNA Mariner -37 43 1 * 658 194 28 0 chr4 53855842 53855985 -130432677 + MER20B DNA MER1_type 631 777 -6 430 263 26 51 chr4 53856981 53857137 -130431525 + MIR SINE MIR 111 262 0 782 279 22 22 chr4 53857220 53857446 -130431216 + MIR SINE MIR 4 229 -33 250 297 109 36 chr4 53857562 53857700 -130430962 + L2 LINE L2 3125 3272 0 274 333 29 43 chr4 53858394 53858532 -130430130 + L2 LINE L2 2924 3059 -213 2055 133 3 0 chr4 53858763 53859057 -130429605 - AluSx SINE Alu -17 295 1 22 0 0 0 chr4 53859139 53859161 -130429501 + AT_rich Low_complexity Low_complexity 1 22 0 369 348 76 18 chr4 53859429 53859705 -130428957 + L1M4 LINE L1 2418 2709 -3437 472 274 42 9 chr4 53860118 53860330 -130428332 + MER113 DNA MER1_type? 47 265 -256 21 71 0 0 chr4 53860479 53860521 -130428141 + AT_rich Low_complexity Low_complexity 1 42 0 704 320 17 4 chr4 53860674 53860905 -130427757 - MIR SINE MIR -1 261 28 1408 156 19 51 chr4 53861015 53861298 -130427364 + AluJo SINE Alu 35 309 0 216 158 0 0 chr4 53861782 53861820 -130426842 + T-rich Low_complexity Low_complexity 1 38 0 1628 213 57 37 chr4 53863154 53863666 -130424996 - Charlie1b DNA MER1_type -1 522 1 307 213 43 0 chr4 53864173 53864267 -130424395 + (TATG)n Simple_repeat Simple_repeat 4 101 0 344 298 56 37 chr4 53865189 53865350 -130423312 - MIR SINE MIR -97 165 2 318 265 103 17 chr4 53865430 53865547 -130423115 + L2 LINE L2 3168 3294 -19 270 81 0 0 chr4 53865558 53865595 -130423067 + (TGGA)n Simple_repeat Simple_repeat 4 40 0 494 277 24 108 chr4 53865769 53866018 -130422644 - L2 LINE L2 -1 3271 3044 448 330 71 6 chr4 53866707 53866889 -130421773 + MER91A DNA MER1_type 3 196 0 434 174 70 0 chr4 53867022 53867108 -130421554 + L2 LINE L2 3222 3313 0 264 250 88 0 chr4 53867406 53867474 -130421188 + MIR SINE MIR 81 154 -108 1661 132 101 4 chr4 53867474 53867731 -130420931 - AluJb SINE Alu -30 282 1 620 235 133 0 chr4 53867746 53867912 -130420750 + MIR SINE MIR 43 230 -32 718 174 0 45 chr4 53868368 53868500 -130420162 - FLAM_C SINE Alu -16 127 2 219 352 23 0 chr4 53868550 53868638 -130420024 + L2 LINE L2 3162 3251 -21 644 86 0 0 chr4 53868815 53868908 -130419754 - L1MB2 LINE L1 -3 6168 6076 266 323 16 31 chr4 53870821 53870948 -130417714 - MIR SINE MIR -1 261 137 1497 244 88 0 chr4 53871020 53871429 -130417233 + LTR16C LTR ERVL 33 477 -14 407 311 52 20 chr4 53871636 53871884 -130416778 - MIR SINE MIR -2 260 5 1890 193 68 52 chr4 53871925 53872422 -130416240 - MLT1D LTR MaLR 0 505 1 859 256 139 76 chr4 53872710 53872825 -130415837 - MLT1L LTR MaLR -14 601 495 1800 173 0 20 chr4 53872825 53873126 -130415536 - AluJb SINE Alu -13 299 5 859 256 139 76 chr4 53873126 53873548 -130415114 - MLT1L LTR MaLR -120 495 30 367 322 71 6 chr4 53873728 53873911 -130414751 + MIR SINE MIR 63 257 -5 310 217 175 54 chr4 53874727 53874893 -130413769 + MER5A DNA MER1_type 4 189 0 541 178 12 104 chr4 53876050 53876213 -130412449 + MER58C DNA MER1_type 67 214 -1 303 259 175 35 chr4 53876224 53876367 -130412295 + MER5A DNA MER1_type 21 183 -6 368 267 48 20 chr4 53876417 53876563 -130412099 + MIR SINE MIR 40 189 -73 400 226 25 27 chr4 53877739 53877870 -130410792 + MIR SINE MIR 7 142 -66 312 242 33 22 chr4 53878119 53878210 -130410452 + MER94 DNA DNA 1 92 -42 280 254 7 87 chr4 53879239 53879377 -130409285 + MIR SINE MIR 49 175 -87 569 241 106 12 chr4 53881142 53881312 -130407350 + MIR SINE MIR 77 262 0 192 77 0 0 chr4 53881312 53881338 -130407324 + (CAT)n Simple_repeat Simple_repeat 2 27 0 863 234 49 78 chr4 53882648 53882956 -130405706 + MER102b DNA MER1_type 29 327 -14 367 306 9 0 chr4 53883925 53884033 -130404629 + MER91A DNA MER1_type 5 113 -83 2876 0 0 0 chr4 53884183 53884483 -130404179 - AluYa5 SINE Alu -11 300 1 269 318 111 21 chr4 53885388 53885577 -130403085 + MIR SINE MIR 13 218 -44 371 250 134 87 chr4 53885675 53885749 -130402913 + MER5A DNA MER1_type 10 79 -110 2004 139 20 0 chr4 53885749 53886051 -130402611 + AluSx SINE Alu 1 308 -4 371 250 134 87 chr4 53886051 53886148 -130402514 + MER5A DNA MER1_type 79 189 0 226 265 0 0 chr4 53886632 53886681 -130401981 - L2 LINE L2 0 3272 3224 236 327 167 20 chr4 53886792 53887098 -130401564 + LTR16A LTR ERVL 24 374 -76 22 35 0 0 chr4 53887530 53887559 -130401103 + AT_rich Low_complexity Low_complexity 1 29 0 291 215 0 0 chr4 53887616 53887681 -130400981 - L1MC/D LINE L1 -1964 5844 5780 397 332 40 20 chr4 53887712 53887911 -130400751 + MLT1I LTR MaLR 16 218 -191 400 289 150 14 chr4 53888096 53888433 -130400229 - L1MC/D LINE L1 -356 5765 5362 211 273 76 15 chr4 53888605 53888671 -130399991 - L2 LINE L2 -13 3300 3231 309 212 24 6 chr4 53888849 53888931 -130399731 - MIR3 SINE MIR -51 157 87 2203 139 0 0 chr4 53888938 53889241 -130399421 - AluSx SINE Alu -9 303 1 44984 42 1 1 chr4 53889679 53895838 -130392824 + L1PA3 LINE L1 1 6155 0 320 222 206 0 chr4 53895962 53896088 -130392574 + MIR SINE MIR 110 261 -1 226 314 43 0 chr4 53897756 53897826 -130390836 + MIR SINE MIR 110 182 -80 684 152 123 0 chr4 53898372 53898510 -130390152 - AluJo SINE Alu -92 220 66 336 209 278 0 chr4 53898532 53898647 -130390015 + MER5A DNA MER1_type 24 170 -19 552 315 126 23 chr4 53898786 53899135 -130389527 - MLT1J LTR MaLR -121 390 6 858 134 0 28 chr4 53899589 53899731 -130388931 - FLAM_C SINE Alu 0 143 6 258 239 0 0 chr4 53900008 53900054 -130388608 - L1M4 LINE L1 -708 5476 5431 481 212 41 27 chr4 53901091 53901237 -130387425 - L1MC5 LINE L1 -31 7930 7783 282 286 60 15 chr4 53901283 53901416 -130387246 + L2 LINE L2 2522 2660 -654 376 281 42 18 chr4 53901419 53901586 -130387076 - L1ME3A LINE L1 -7 6163 5993 1073 165 30 12 chr4 53901600 53901927 -130386735 - MLT1B LTR MaLR -4 386 3 2366 238 43 67 chr4 53902042 53903001 -130385661 - L1MC5 LINE L1 -431 7530 6619 426 213 21 0 chr4 53903287 53903381 -130385281 - L1ME1 LINE L1 -5 6161 6066 3375 193 46 53 chr4 53903418 53904042 -130384620 - L1ME1 LINE L1 -72 6094 5484 1384 167 114 11 chr4 53904042 53904323 -130384339 + AluSx SINE Alu 1 310 -2 3375 193 46 53 chr4 53904323 53904620 -130384042 - L1ME1 LINE L1 -682 5484 5187 442 176 59 96 chr4 53904841 53904866 -130383796 - L1MC5 LINE L1 -834 7127 7103 2337 118 0 3 chr4 53904866 53905179 -130383483 + AluSx SINE Alu 1 312 0 442 176 59 96 chr4 53905179 53905289 -130383373 - L1MC5 LINE L1 -858 7103 6997 303 262 103 8 chr4 53905443 53905569 -130383093 + L1ME4a LINE L1 5978 6115 -6 2413 100 0 3 chr4 53905667 53905977 -130382685 - AluSx SINE Alu -3 309 1 1972 192 24 3 chr4 53906262 53906642 -130382020 - MLT1B LTR MaLR -2 388 1 426 183 55 165 chr4 53907447 53907611 -130381051 - MER69 DNA AcHobo -2379 147 2 281 208 14 14 chr4 53907682 53907754 -130380908 + L2 LINE L2 3242 3313 0 268 325 33 20 chr4 53908751 53908902 -130379760 + MIR SINE MIR 6 158 -104 1451 202 44 45 chr4 53908902 53909090 -130379572 + MSTD LTR MaLR 1 191 -199 2172 104 0 0 chr4 53909090 53909393 -130379269 + AluSg SINE Alu 1 303 0 1451 202 44 45 chr4 53909393 53909565 -130379097 + MSTD LTR MaLR 191 362 -28 360 119 0 0 chr4 53909846 53909905 -130378757 + (GGAA)n Simple_repeat Simple_repeat 3 61 0 537 198 62 28 chr4 53911424 53911585 -130377077 + MIR SINE MIR 69 234 -28 722 208 149 27 chr4 53911624 53911845 -130376817 + MIR SINE MIR 7 254 -8 24 0 0 0 chr4 53912862 53912886 -130375776 + AT_rich Low_complexity Low_complexity 1 24 0 197 238 0 0 chr4 53913150 53913192 -130375470 + L2 LINE L2 3223 3264 -8 2269 152 36 75 chr4 53913610 53914166 -130374496 + L1MB4 LINE L1 5644 6177 -3 1887 126 0 11 chr4 53916406 53916676 -130371986 - AluSx SINE Alu -10 302 36 1884 175 0 0 chr4 53917022 53917319 -130371343 + AluJb SINE Alu 1 297 -15 201 323 61 18 chr4 53918227 53918391 -130370271 - L2 LINE L2 -581 2733 2563 418 39 0 0 chr4 53918821 53918872 -130369790 + MADE1 DNA Mariner 3 53 -27 234 0 0 0 chr4 53919668 53919694 -130368968 + (CACCC)n Simple_repeat Simple_repeat 5 30 0 909 110 16 0 chr4 53920385 53920512 -130368150 - BC200 scRNA scRNA -71 129 1 215 293 0 17 chr4 53920606 53920664 -130367998 + MIR SINE MIR 92 148 -60 355 185 54 33 chr4 53920706 53920798 -130367864 + L1MA4 LINE L1 6167 6260 -40 2180 123 0 3 chr4 53920815 53921116 -130367546 + AluSx SINE Alu 1 300 -12 2018 145 13 13 chr4 53921137 53921448 -130367214 + AluSx SINE Alu 1 311 -1 1975 159 7 0 chr4 53921478 53921780 -130366882 + AluJb SINE Alu 1 304 -8 181 188 83 0 chr4 53921782 53921830 -130366832 + L2 LINE L2 3221 3272 0 535 99 49 0 chr4 53921874 53921955 -130366707 - AluSg/x SINE Alu -11 299 215 1152 118 0 0 chr4 53921955 53922108 -130366554 - AluSq SINE Alu -160 153 1 2297 88 3 10 chr4 53923174 53923480 -130365182 + AluSq SINE Alu 1 304 -9 209 294 0 0 chr4 53923602 53923653 -130365009 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 2319 158 32 2 chr4 53923679 53924089 -130364573 - L1MB4 LINE L1 -2 6178 5757 719 151 190 0 chr4 53924919 53925090 -130363572 + L1MC4 LINE L1 7849 7994 -1 195 261 87 14 chr4 53925261 53925330 -130363332 + MIR SINE MIR 82 138 -70 657 69 0 0 chr4 53925488 53925575 -130363087 + (GGAA)n Simple_repeat Simple_repeat 1 87 0 240 255 0 0 chr4 53926581 53926632 -130362030 + G-rich Low_complexity Low_complexity 3 53 0 206 353 12 0 chr4 53927173 53927258 -130361404 - L2 LINE L2 -541 2773 2688 1073 128 33 6 chr4 53927520 53927700 -130360962 - MER5A DNA MER1_type 0 189 5 1660 110 0 5 chr4 53929795 53930014 -130358648 + AluSx SINE Alu 1 218 -94 195 42 0 0 chr4 53930029 53930053 -130358609 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 258 286 112 90 chr4 53930526 53930981 -130357681 + HAL1b LINE L1 80 544 -804 264 297 65 26 chr4 53931069 53931224 -130357438 + HAL1b LINE L1 673 833 -515 1102 239 186 19 chr4 53931551 53932090 -130356572 + L1MC5 LINE L1 7299 7927 -34 1185 153 141 4 chr4 53932919 53933347 -130355315 - MER39 LTR ERV1 -158 549 1 250 284 0 40 chr4 53934206 53934280 -130354382 + L2 LINE L2 3187 3257 -56 2405 61 0 0 chr4 53937289 53937608 -130351054 + AluSc SINE Alu 2 320 0 403 257 15 29 chr4 53937680 53937816 -130350846 - L3b LINE CR1 -324 1259 1126 2310 171 100 2 chr4 53938520 53938969 -130349693 + L1MB2 LINE L1 5679 6171 0 1546 138 97 26 chr4 53938978 53939293 -130349369 + AluJo SINE Alu 1 312 0 708 258 62 18 chr4 53940445 53940670 -130347992 - MIR SINE MIR -23 239 5 2309 107 0 0 chr4 53940997 53941297 -130347365 + AluSx SINE Alu 1 300 -12 369 206 29 5 chr4 53941386 53941524 -130347138 - MIR SINE MIR 0 262 58 337 258 84 52 chr4 53941766 53941921 -130346741 - Charlie8 DNA MER1_type -2256 161 2 296 221 15 0 chr4 53942972 53943040 -130345622 + L2 LINE L2 3241 3309 -4 320 213 83 28 chr4 53943143 53943251 -130345411 + MIR SINE MIR 121 234 -28 310 321 7 58 chr4 53947350 53947487 -130341175 - L2 LINE L2 0 3272 3143 244 299 215 0 chr4 53947890 53947997 -130340665 - L2 LINE L2 -5 3267 3138 281 146 21 0 chr4 53948349 53948397 -130340265 + MER3 DNA MER1_type 1 49 -160 900 259 85 92 chr4 53948496 53949049 -130339613 - MLT1K LTR MaLR -4 584 36 915 224 146 48 chr4 53949109 53949587 -130339075 - L1ME4a LINE L1 -5 6116 5592 243 353 85 33 chr4 53949751 53950431 -130338231 - L2 LINE L2 -5 3267 2549 2245 73 55 14 chr4 53950579 53950868 -130337794 - AluY SINE Alu -10 301 1 2014 138 23 7 chr4 53950871 53951175 -130337487 - AluJo SINE Alu -3 309 1 2101 138 3 0 chr4 53951361 53951658 -130337004 + AluSx SINE Alu 1 298 -14 247 286 0 0 chr4 53951724 53951794 -130336868 - L2 LINE L2 -1313 2001 1932 540 227 0 0 chr4 53951843 53951953 -130336709 - MIR SINE MIR -45 217 108 4311 98 25 6 chr4 53952222 53952905 -130335757 + MER11A LTR ERVK 429 1266 0 27498 92 7 18 chr4 53952907 53953797 -130334865 + L1P LINE L1 978 1876 -4270 2113 132 3 10 chr4 53953797 53954101 -130334561 + AluSx SINE Alu 1 302 -10 27498 92 7 18 chr4 53954101 53957157 -130331505 + L1P LINE L1 1876 4882 -1264 426 183 55 165 chr4 53957807 53957971 -130330691 - MER69 DNA AcHobo -2379 147 2 281 208 14 14 chr4 53958042 53958114 -130330548 + L2 LINE L2 3242 3313 0 268 325 33 20 chr4 53959111 53959262 -130329400 + MIR SINE MIR 6 158 -104 1451 202 44 45 chr4 53959262 53959450 -130329212 + MSTD LTR MaLR 1 191 -199 2172 104 0 0 chr4 53959450 53959753 -130328909 + AluSg SINE Alu 1 303 0 1451 202 44 45 chr4 53959753 53959925 -130328737 + MSTD LTR MaLR 191 362 -28 360 119 0 0 chr4 53960206 53960265 -130328397 + (GGAA)n Simple_repeat Simple_repeat 3 61 0 841 162 17 23 chr4 53960574 53960747 -130327915 + MER53 DNA DNA 11 182 -7 443 299 92 9 chr4 53960857 53961074 -130327588 - MIR SINE MIR -14 248 14 607 324 53 28 chr4 53961992 53962313 -130326349 + L2 LINE L2 2985 3313 0 357 43 0 0 chr4 53962654 53962701 -130325961 + (TC)n Simple_repeat Simple_repeat 2 48 0 186 43 0 0 chr4 53962700 53962723 -130325939 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 322 250 23 0 chr4 53964611 53964699 -130323963 - MIR SINE MIR -61 201 112 1558 219 35 79 chr4 53964700 53965221 -130323441 + MLT2B1 LTR ERVL 1 498 -22 369 0 0 0 chr4 53965248 53965289 -130323373 + (TA)n Simple_repeat Simple_repeat 2 42 0 2448 79 0 3 chr4 53965289 53965594 -130323068 - AluY SINE Alu -7 304 1 312 192 0 2 chr4 53965685 53965752 -130322910 + MLT2D LTR ERVL 357 414 0 266 235 3 27 chr4 53965753 53965844 -130322818 - MIR SINE MIR -97 111 25 22 0 0 0 chr4 53966716 53966738 -130321924 + AT_rich Low_complexity Low_complexity 1 22 0 702 223 17 6 chr4 53966752 53966927 -130321735 - MER104 DNA MER2_type 0 180 4 21 36 0 0 chr4 53967481 53967509 -130321153 + AT_rich Low_complexity Low_complexity 1 28 0 713 260 64 92 chr4 53968004 53968396 -130320266 - L2 LINE L2 -2 3311 2931 1698 171 26 7 chr4 53968789 53969093 -130319569 + MER58B DNA MER1_type 1 310 -31 4861 221 37 33 chr4 53969185 53970740 -130317922 - L1ME1 LINE L1 -5 6161 4591 2237 102 0 16 chr4 53970740 53971043 -130317619 + AluSx SINE Alu 1 298 -14 4861 221 37 33 chr4 53971043 53971554 -130317108 - L1ME1 LINE L1 -1575 4591 4084 430 259 89 44 chr4 53971561 53971719 -130316943 - MLT1K LTR MaLR -103 485 321 900 193 45 0 chr4 53971784 53971960 -130316702 + MER20 DNA MER1_type 31 214 -5 881 323 10 36 chr4 53971970 53972273 -130316389 - MLT1K LTR MaLR -291 297 3 186 43 0 0 chr4 53973094 53973117 -130315545 + (TG)n Simple_repeat Simple_repeat 2 24 0 2169 115 3 0 chr4 53974146 53974433 -130314229 + AluSx SINE Alu 5 292 -20 684 194 82 24 chr4 53974894 53975064 -130313598 + MER104 DNA MER2_type 1 180 0 350 265 0 24 chr4 53976577 53976660 -130312002 - L2 LINE L2 -2 3270 3190 757 285 124 32 chr4 53976765 53977220 -130311442 + MLT1K LTR MaLR 41 588 0 309 259 78 26 chr4 53977438 53977554 -130311108 + MIR SINE MIR 27 148 -114 1866 156 0 11 chr4 53977868 53978151 -130310511 + AluSx SINE Alu 1 280 -32 315 0 0 0 chr4 53978153 53978188 -130310474 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 481 287 14 56 chr4 53978748 53978964 -130309698 + LTR67 LTR ERVL 350 556 -1 218 274 48 0 chr4 53979246 53979308 -130309354 - L2 LINE L2 -1 3312 3248 2345 97 6 0 chr4 53979381 53979692 -130308970 - AluSp SINE Alu 0 313 1 570 198 6 79 chr4 53980485 53980662 -130308000 + MIR SINE MIR 99 262 0 342 311 0 3 chr4 53980669 53980774 -130307888 - MIR SINE MIR -53 155 53 1702 150 63 3 chr4 53981296 53981582 -130307080 + AluSx SINE Alu 1 303 -9 394 320 51 11 chr4 53981672 53981847 -130306815 + MIR SINE MIR 63 244 -18 1609 195 0 17 chr4 53981872 53982170 -130306492 + AluJo SINE Alu 1 293 -19 780 211 101 14 chr4 53982405 53982613 -130306049 - L1ME3 LINE L1 -2 6160 5935 3335 206 108 27 chr4 53983739 53984785 -130303877 - Charlie7 DNA MER1_type 0 2612 1482 404 296 128 10 chr4 53984818 53985014 -130303648 - Charlie7 DNA MER1_type -2314 298 80 450 284 30 0 chr4 53985102 53985236 -130303426 + MIR SINE MIR 91 228 -34 602 292 0 12 chr4 53985385 53985556 -130303106 + MER117 DNA MER1_type 3 171 -26 2033 164 0 3 chr4 53986410 53986721 -130301941 - AluJb SINE Alu -2 310 1 1905 161 26 71 chr4 53987514 53987797 -130300865 - MLT1A1 LTR MaLR 0 365 102 2872 22 0 0 chr4 53987797 53988115 -130300547 + AluYb8 SINE Alu 1 318 0 1905 161 26 71 chr4 53988115 53988211 -130300451 - MLT1A1 LTR MaLR -263 102 3 477 268 9 9 chr4 53988429 53988541 -130300121 + L2 LINE L2 3202 3313 0 415 258 22 19 chr4 53988755 53988962 -130299700 - MIR SINE MIR -2 260 3 207 0 0 0 chr4 53989005 53989028 -130299634 + (TG)n Simple_repeat Simple_repeat 2 24 0 362 281 79 30 chr4 53989046 53989210 -130299452 + MIR SINE MIR 90 261 -1 252 185 0 0 chr4 53990297 53990351 -130298311 + CT-rich Low_complexity Low_complexity 3 56 0 452 276 42 52 chr4 53990852 53991044 -130297618 + L2 LINE L2 3122 3311 -2 188 274 150 35 chr4 53991056 53991169 -130297493 - MIR3 SINE MIR -48 160 35 * 760 252 52 74 chr4 53991156 53991481 -130297181 + L2 LINE L2 2996 3313 0 328 278 123 27 chr4 53991557 53991684 -130296978 + MIR SINE MIR 21 162 -46 721 276 101 4 chr4 53992378 53992606 -130296056 + MIR SINE MIR 9 258 -4 625 271 59 46 chr4 53992578 53992881 -130295781 - L2 LINE L2 -11 3302 2996 * 289 265 120 26 chr4 53992864 53992981 -130295681 + MIR3 SINE MIR 33 160 -48 * 387 329 6 37 chr4 53992993 53993157 -130295505 - L2 LINE L2 -2 3311 3153 1838 146 0 64 chr4 53993607 53993936 -130294726 - AluJo SINE Alu -1 311 4 205 254 178 92 chr4 53993980 53994165 -130294497 - L3 LINE CR1 -763 814 614 1416 242 74 94 chr4 53994750 53994871 -130293791 + L1ME LINE L1 5 127 -5943 1833 175 69 23 chr4 53994871 53995220 -130293442 + MLT1A1 LTR MaLR 1 365 0 1416 242 74 94 chr4 53995220 53995812 -130292850 + L1ME LINE L1 127 704 -5366 186 312 29 80 chr4 53995941 53996079 -130292583 - L2 LINE L2 -205 3067 2937 26 0 0 0 chr4 53996581 53996607 -130292055 + AT_rich Low_complexity Low_complexity 1 26 0 1797 93 9 0 chr4 53997102 53997328 -130291334 + AluSc SINE Alu 71 298 -11 1307 166 37 5 chr4 53997355 53997572 -130291090 + AluJb SINE Alu 85 308 -4 271 143 0 0 chr4 53998239 53998281 -130290381 - L2 LINE L2 -10 3303 3262 214 262 0 33 chr4 53998241 53998302 -130290360 - MIR SINE MIR -6 256 198 * 1826 120 51 4 chr4 53998789 53999063 -130289599 - AluSx SINE Alu 0 312 26 559 207 43 82 chr4 53999111 53999343 -130289319 - L1MB8 LINE L1 0 6178 5956 676 297 148 38 chr4 53999343 53999918 -130288744 + L2 LINE L2 2081 2718 -596 317 298 62 39 chr4 53999971 54000179 -130288483 + L2 LINE L2 2838 3050 -222 1690 187 3 7 chr4 54000264 54000558 -130288104 - AluJb SINE Alu -19 293 1 611 242 132 32 chr4 54001045 54001235 -130287427 + MER63A DNA MER1_type 1 209 -1 711 159 0 0 chr4 54002691 54002798 -130285864 + AluJo SINE Alu 40 146 -166 180 0 0 0 chr4 54003469 54003489 -130285173 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2115 138 0 3 chr4 54003645 54003956 -130284706 + AluSx SINE Alu 1 310 -2 1605 246 75 58 chr4 54004000 54004630 -130284032 + L1MCa LINE L1 1 624 -5421 1099 163 0 0 chr4 54004630 54004796 -130283866 - AluJb SINE Alu -13 299 134 1127 232 12 12 chr4 54004796 54005055 -130283607 + L1MCa LINE L1 615 873 -5172 2618 200 45 28 chr4 54005058 54005367 -130283295 + L1MCa LINE L1 992 1294 -5270 2451 93 0 0 chr4 54005367 54005678 -130282984 + AluY SINE Alu 1 311 0 2618 200 45 28 chr4 54005678 54006037 -130282625 + L1MCa LINE L1 1294 1671 -4893 1245 203 71 45 chr4 54006058 54006370 -130282292 + MLT1B LTR MaLR 1 326 -64 405 0 0 0 chr4 54006370 54006415 -130282247 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 1245 203 71 45 chr4 54006415 54006482 -130282180 + MLT1B LTR MaLR 326 390 0 1610 245 44 20 chr4 54006489 54006834 -130281828 + L1MCa LINE L1 1884 2193 -4371 2063 174 25 0 chr4 54006834 54007191 -130281471 - MER47A DNA MER2_type 0 366 1 1610 245 44 20 chr4 54007191 54007469 -130281193 + L1MCa LINE L1 2193 2463 -4101 4884 69 23 6 chr4 54007469 54008482 -130280180 - MER11A LTR ERVK 0 1266 1 722 186 40 15 chr4 54008482 54008684 -130279978 + L1MCa LINE L1 2458 2697 -3947 803 190 19 0 chr4 54008690 54008848 -130279814 + L1MA6 LINE L1 6133 6293 -7 5856 68 6 12 chr4 54008869 54009593 -130279069 - L1PA6 LINE L1 -11 6143 5425 8912 71 14 5 chr4 54009693 54011505 -130277157 + L1PA6 LINE L1 4176 6000 -154 18555 90 7 16 chr4 54011605 54014156 -130274506 - L1PA6 LINE L1 -1775 4371 1875 2107 132 3 10 chr4 54014156 54014460 -130274202 - AluSx SINE Alu -10 302 1 18555 90 7 16 chr4 54014460 54015350 -130273312 - L1PA6 LINE L1 -4271 1875 978 3989 82 35 4 chr4 54015352 54016354 -130272308 - MER11A LTR ERVK 0 1266 1 4083 193 50 23 chr4 54016397 54017324 -130271338 - L1PA6 LINE L1 -5184 962 11 362 301 80 48 chr4 54017344 54017360 -130271302 + L1MEd LINE L1 938 952 -5167 2028 141 0 17 chr4 54017360 54017732 -130270930 + AluSx SINE Alu 1 312 0 362 301 80 48 chr4 54017732 54017964 -130270698 + L1MEd LINE L1 952 1194 -4925 919 270 79 60 chr4 54018157 54018653 -130270009 - MLT1J LTR MaLR -6 505 1 733 247 43 63 chr4 54019883 54020138 -130268524 - MIR SINE MIR 0 262 13 359 322 88 67 chr4 54020203 54020442 -130268220 + MIR SINE MIR 2 245 -17 327 25 0 0 chr4 54020442 54020482 -130268180 + (CA)n Simple_repeat Simple_repeat 2 41 0 644 205 27 0 chr4 54020612 54020724 -130267938 + FLAM_A SINE Alu 1 115 -18 186 133 0 0 chr4 54020739 54020769 -130267893 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 12238 139 18 117 chr4 54022176 54025199 -130263463 - L1P LINE L1 -3413 2733 12 335 275 50 17 chr4 54025217 54025337 -130263325 - MIR SINE MIR -49 213 90 318 248 26 68 chr4 54025337 54025403 -130263259 - MIR SINE MIR -136 126 66 6223 120 25 47 chr4 54025403 54026498 -130262164 - MER11C LTR ERVK 0 1071 1 318 248 26 68 chr4 54026498 54026548 -130262114 - MIR SINE MIR -196 66 15 386 279 116 29 chr4 54027184 54027596 -130261066 + LTR33 LTR ERVL 38 521 0 290 352 21 28 chr4 54028298 54028346 -130260316 + MIR3 SINE MIR 21 68 -140 1327 164 142 25 chr4 54028346 54028620 -130260042 - AluJo SINE Alu -6 306 1 290 352 21 28 chr4 54028620 54028716 -130259946 + MIR3 SINE MIR 68 164 -44 636 319 39 9 chr4 54028784 54029016 -130259646 + MIR SINE MIR 8 246 -16 21 0 0 0 chr4 54030531 54030552 -130258110 + AT_rich Low_complexity Low_complexity 1 21 0 231 400 30 0 chr4 54030662 54030762 -130257900 + L2 LINE L2 3150 3252 -20 547 319 38 19 chr4 54030942 54031152 -130257510 - MIR SINE MIR -35 227 14 21 0 0 0 chr4 54031262 54031283 -130257379 + AT_rich Low_complexity Low_complexity 1 21 0 787 265 18 32 chr4 54033098 54033317 -130255345 - MIR SINE MIR -42 220 5 198 343 19 19 chr4 54033380 54033485 -130255177 - L2 LINE L2 -40 3273 3169 516 279 147 29 chr4 54033909 54034113 -130254549 - MIR SINE MIR -13 249 22 184 311 101 0 chr4 54034126 54034196 -130254466 - MIR SINE MIR -105 103 41 27 0 0 0 chr4 54034795 54034822 -130253840 + AT_rich Low_complexity Low_complexity 1 27 0 585 162 36 9 chr4 54036231 54036342 -130252320 - L2 LINE L2 -9 3304 3191 316 191 0 44 chr4 54036634 54036702 -130251960 + MER5B DNA MER1_type 2 66 -112 4661 155 4 44 chr4 54036703 54037832 -130250830 + L1MB1 LINE L1 5086 6168 0 307 211 28 28 chr4 54037846 54037917 -130250745 + MER5B DNA MER1_type 50 120 -58 1746 151 7 23 chr4 54038009 54038313 -130250349 - AluJb SINE Alu -2 310 12 221 376 50 0 chr4 54040354 54040455 -130248207 - L2 LINE L2 -21 3251 3146 426 357 65 0 chr4 54040730 54040898 -130247764 + MIR SINE MIR 13 191 -71 1233 186 35 31 chr4 54041731 54042049 -130246613 - MER33 DNA MER1_type 0 324 6 196 313 30 15 chr4 54042721 54042788 -130245874 + L2 LINE L2 3005 3072 -241 1872 172 0 0 chr4 54043019 54043316 -130245346 - AluJb SINE Alu -15 297 1 199 304 0 54 chr4 54044370 54044462 -130244200 - MIR SINE MIR -78 184 98 294 73 0 0 chr4 54044940 54044981 -130243681 + (CA)n Simple_repeat Simple_repeat 2 42 0 1997 132 17 3 chr4 54045386 54045673 -130242989 - AluSx SINE Alu -21 291 1 186 284 104 0 chr4 54046856 54046923 -130241739 - L2 LINE L2 -46 3226 3153 25 65 0 0 chr4 54047162 54047208 -130241454 + AT_rich Low_complexity Low_complexity 1 46 0 1597 210 3 13 chr4 54047248 54047562 -130241100 - AluJb SINE Alu -1 311 1 198 0 0 0 chr4 54047946 54047968 -130240694 + (T)n Simple_repeat Simple_repeat 1 22 0 2367 103 3 0 chr4 54048300 54048612 -130240050 + AluSp SINE Alu 1 313 0 1876 184 7 0 chr4 54049642 54049951 -130238711 - AluJo SINE Alu 0 312 2 310 315 114 41 chr4 54051628 54051847 -130236815 + MIR SINE MIR 9 243 -19 1577 189 0 0 chr4 54051867 54052110 -130236552 + AluJo SINE Alu 38 280 -32 192 236 56 42 chr4 54052236 54052308 -130236354 - MIR SINE MIR -62 200 128 247 275 88 22 chr4 54053035 54053126 -130235536 + MIR3 SINE MIR 98 194 -14 2711 95 30 7 chr4 54053212 54053678 -130234984 - MLT2A1 LTR ERVL -2 451 1 201 358 60 0 chr4 54054760 54054827 -130233835 + L2 LINE L2 3176 3246 -26 405 95 0 0 chr4 54055042 54055105 -130233557 + (CA)n Simple_repeat Simple_repeat 2 64 0 573 245 185 40 chr4 54055951 54056302 -130232360 - MLT1H LTR MaLR -16 533 132 239 0 0 31 chr4 54056513 54056545 -130232117 + (TTA)n Simple_repeat Simple_repeat 2 32 0 302 178 0 0 chr4 54056552 54056597 -130232065 - AluJo SINE Alu -30 272 228 915 191 28 11 chr4 54056597 54056775 -130231887 - AluJo SINE Alu -131 181 1 2347 137 50 34 chr4 54056833 54057271 -130231391 - MER65A LTR ERV1 0 445 1 22 35 0 0 chr4 54057346 54057375 -130231287 + AT_rich Low_complexity Low_complexity 1 29 0 4055 79 13 16 chr4 54057445 54058001 -130230661 + MER41A LTR ERV1 1 554 0 326 161 156 4 chr4 54058296 54058382 -130230280 - MIR SINE MIR -67 141 47 1743 175 48 17 chr4 54059773 54059993 -130228669 + MLT1A1 LTR MaLR 1 238 -127 2239 100 109 0 chr4 54059993 54060333 -130228329 + MER51B LTR ERV1 1 377 0 1743 175 48 17 chr4 54060333 54060466 -130228196 + MLT1A1 LTR MaLR 238 365 0 582 277 60 106 chr4 54060626 54061519 -130227143 + L1MEd LINE L1 135 986 -5219 947 225 8 22 chr4 54061556 54061823 -130226839 + L1MC5 LINE L1 7661 7923 -38 452 303 27 5 chr4 54061891 54062079 -130226583 + L1MEd LINE L1 1026 1217 -4988 570 216 0 0 chr4 54062112 54062228 -130226434 + MLT1A1 LTR MaLR 134 249 -116 248 276 122 58 chr4 54062248 54062559 -130226103 + HAL1 LINE L1 1237 1567 -940 312 304 118 32 chr4 54062561 54062781 -130225881 + L1MEd LINE L1 1585 1823 -4573 1268 193 0 0 chr4 54062804 54063037 -130225625 + L1MDa LINE L1 33 265 -6275 2339 159 77 35 chr4 54063056 54063705 -130224957 + L1MDa LINE L1 1402 2077 -4463 2845 191 22 8 chr4 54063945 54064452 -130224210 + MLT2B3 LTR ERVL 1 514 -40 789 307 27 45 chr4 54064819 54065011 -130223651 + L1MDa LINE L1 2530 2724 -3816 2336 94 0 10 chr4 54065011 54065310 -130223352 + AluY SINE Alu 1 296 -15 789 307 27 45 chr4 54065310 54065321 -130223341 + L1MDa LINE L1 2724 2734 -3806 2309 113 0 0 chr4 54065321 54065622 -130223040 + AluSg SINE Alu 1 301 -9 789 307 27 45 chr4 54065622 54066150 -130222512 + L1MDa LINE L1 2734 3249 -3291 7623 45 5 6 chr4 54066216 54067114 -130221548 + MER11D LTR ERVK 1 897 0 339 263 97 0 chr4 54067499 54067613 -130221049 + MLT1K LTR MaLR 1 125 -424 24 0 0 0 chr4 54067796 54067820 -130220842 + AT_rich Low_complexity Low_complexity 1 24 0 2220 193 24 17 chr4 54068557 54069024 -130219638 - L1MC3 LINE L1 -2 7783 7314 759 230 86 59 chr4 54069603 54070040 -130218622 - LTR48B LTR ERV1 -9 778 134 339 191 95 11 chr4 54070045 54070135 -130218527 - MER34 LTR ERV1 -453 89 1 513 290 188 23 chr4 54070136 54070599 -130218063 - L2 LINE L2 -255 3058 2478 218 268 18 0 chr4 54071583 54071639 -130217023 + L2 LINE L2 2246 2302 -1012 554 276 25 31 chr4 54071720 54071916 -130216746 - MIR SINE MIR -10 252 58 727 258 174 35 chr4 54071997 54072342 -130216320 + MLT1K LTR MaLR 186 578 -10 2320 81 0 16 chr4 54072396 54072706 -130215956 - AluSg SINE Alu -5 305 1 821 264 66 95 chr4 54072706 54073252 -130215410 + LTR67 LTR ERVL 28 557 0 333 250 31 88 chr4 54073374 54073566 -130215096 - L1ME4a LINE L1 -62 6059 5879 1415 165 142 0 chr4 54073631 54073885 -130214777 - AluJb SINE Alu -18 294 5 867 197 0 0 chr4 54074361 54074513 -130214149 - FRAM SINE Alu -21 155 4 208 277 0 0 chr4 54075534 54075581 -130213081 + CT-rich Low_complexity Low_complexity 2 48 0 1710 173 0 3 chr4 54075860 54076168 -130212494 - AluJo SINE Alu 0 307 1 245 185 19 0 chr4 54076339 54076393 -130212269 + (CA)n Simple_repeat Simple_repeat 1 55 0 195 42 0 0 chr4 54076717 54076741 -130211921 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 279 0 0 0 chr4 54076740 54076771 -130211891 + (CA)n Simple_repeat Simple_repeat 1 31 0 2001 100 43 4 chr4 54078188 54078468 -130210194 - AluSx SINE Alu -21 291 1 352 327 54 30 chr4 54078471 54078844 -130209818 + L2 LINE L2 2051 2432 -882 * 629 142 67 8 chr4 54078835 54078955 -130209707 - L2 LINE L2 0 3313 3187 490 231 55 50 chr4 54079353 54079552 -130209110 - MIR SINE MIR 0 262 63 197 283 0 0 chr4 54083146 54083199 -130205463 - MIR SINE MIR -129 133 81 362 296 141 10 chr4 54083555 54083761 -130204901 + MIR SINE MIR 20 252 -10 2277 113 3 3 chr4 54083905 54084215 -130204447 - AluSg SINE Alu 0 310 1 630 280 53 44 chr4 54085201 54085540 -130203122 + MLT1I LTR MaLR 62 403 -6 532 276 35 49 chr4 54085768 54085971 -130202691 - MIR SINE MIR 0 262 63 200 140 0 120 chr4 54086407 54086457 -130202205 + MIR SINE MIR 112 155 -107 * 959 205 54 5 chr4 54086449 54086654 -130202008 - MIR SINE MIR 0 262 48 525 260 0 8 chr4 54086683 54086806 -130201856 + L2 LINE L2 3191 3312 -1 2379 103 19 6 chr4 54086896 54087216 -130201446 + THE1B LTR MaLR 3 326 -38 3958 143 10 3 chr4 54087216 54088315 -130200347 + L1PB1 LINE L1 4691 5791 -360 205 218 18 18 chr4 54088315 54088370 -130200292 + (CATATA)n Simple_repeat Simple_repeat 5 59 0 2422 127 6 0 chr4 54088393 54088781 -130199881 + L1PB1 LINE L1 5782 6171 0 354 106 0 0 chr4 54088783 54088830 -130199832 + THE1B LTR MaLR 318 364 0 234 341 136 32 chr4 54088925 54089233 -130199429 - L2 LINE L2 -1 3271 2932 1429 236 50 17 chr4 54092206 54092566 -130196096 - MLT1A2 LTR MaLR -2 372 1 2096 139 10 0 chr4 54093031 54093340 -130195322 - AluJb SINE Alu 0 312 1 364 133 17 0 chr4 54094915 54094975 -130193687 + MLT1B LTR MaLR 1 61 -406 1119 204 19 9 chr4 54094976 54095187 -130193475 + AluJo SINE Alu 4 216 -96 380 167 0 13 chr4 54095245 54095323 -130193339 + GA-rich Low_complexity Low_complexity 1 77 0 2064 136 7 3 chr4 54095360 54095670 -130192992 + AluSx SINE Alu 1 311 -1 677 179 13 54 chr4 54095692 54095863 -130192799 + MLT1B LTR MaLR 90 235 -155 2021 142 42 17 chr4 54095972 54096325 -130192337 - MLT1B LTR MaLR -2 388 27 1509 214 48 46 chr4 54097126 54097499 -130191163 + MLT1A2 LTR MaLR 1 374 0 1998 129 0 14 chr4 54097717 54098032 -130190630 - AluSx SINE Alu 0 311 1 312 172 303 0 chr4 54098124 54098223 -130190439 + MIR SINE MIR 28 156 -106 526 203 159 6 chr4 54098491 54098649 -130190013 + MER5A DNA MER1_type 4 189 0 373 317 34 49 chr4 54102515 54102583 -130186079 - L1PB3 LINE L1 -124 6030 5963 3839 142 10 44 chr4 54102583 54103271 -130185391 - L1MB8 LINE L1 -205 5973 5310 2301 114 0 0 chr4 54103271 54103568 -130185094 - AluSx SINE Alu -15 297 1 3839 142 10 44 chr4 54103568 54103584 -130185078 - L1MB8 LINE L1 -868 5310 5295 586 339 76 3 chr4 54103603 54103945 -130184717 + L2 LINE L2 2560 2926 -388 334 352 8 0 chr4 54103961 54104089 -130184573 - L2 LINE L2 -7 3265 3137 226 259 59 47 chr4 54104385 54104470 -130184192 + L2 LINE L2 3228 3313 0 196 269 19 0 chr4 54105495 54105547 -130183115 + L2 LINE L2 3205 3257 -15 1037 132 93 0 chr4 54105669 54105851 -130182811 - MER3 DNA MER1_type -5 204 6 765 150 15 8 chr4 54106591 54106724 -130181938 + FRAM SINE Alu 1 131 -45 348 48 0 48 chr4 54106733 54106795 -130181867 + (GAGAA)n Simple_repeat Simple_repeat 5 63 0 609 201 181 15 chr4 54107672 54107871 -130180791 + L2 LINE L2 2354 2585 -729 1020 178 9 93 chr4 54107871 54108096 -130180566 + MER20 DNA MER1_type 1 206 -13 487 229 43 21 chr4 54108099 54108239 -130180423 + L2 LINE L2 2575 2717 -597 21 0 0 0 chr4 54109081 54109102 -130179560 + AT_rich Low_complexity Low_complexity 1 21 0 258 247 180 0 chr4 54109670 54109759 -130178903 - MIR SINE MIR 0 262 158 332 276 35 9 chr4 54111094 54111210 -130177452 - LTR16C LTR ERVL -67 424 306 2068 140 17 0 chr4 54111271 54111571 -130177091 - AluSx SINE Alu -7 305 1 246 228 70 0 chr4 54111690 54111747 -130176915 + MER94 DNA DNA 13 73 -61 872 259 69 59 chr4 54112047 54112149 -130176513 + LTR16C LTR ERVL 98 197 -294 189 0 0 0 chr4 54112149 54112170 -130176492 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 872 259 69 59 chr4 54112170 54112457 -130176205 + LTR16C LTR ERVL 197 491 0 693 146 49 116 chr4 54113067 54113128 -130175534 - MLT1E LTR MaLR -438 155 91 1950 169 0 3 chr4 54113128 54113430 -130175232 + AluJb SINE Alu 1 301 -11 693 146 49 116 chr4 54113430 54113532 -130175130 - MLT1E LTR MaLR -502 91 3 822 217 0 7 chr4 54113596 54113748 -130174914 + FRAM SINE Alu 1 146 -30 25 31 0 0 chr4 54113762 54113794 -130174868 + AT_rich Low_complexity Low_complexity 1 32 0 2339 82 14 0 chr4 54114832 54115125 -130173537 + AluSp SINE Alu 2 298 -15 255 299 35 23 chr4 54115162 54115249 -130173413 + MIR SINE MIR 70 157 -105 806 309 76 40 chr4 54116091 54116564 -130172098 + MLT1J LTR MaLR 22 511 0 341 231 182 84 chr4 54116838 54117041 -130171621 - MIR SINE MIR -10 252 30 221 295 186 21 chr4 54117480 54117673 -130170989 - L2 LINE L2 -86 3227 3003 538 306 88 5 chr4 54118151 54118367 -130170295 + L2 LINE L2 2828 3061 -252 796 296 143 2 chr4 54118779 54119178 -130169484 - L1MC4a LINE L1 -1793 6015 5561 218 220 100 0 chr4 54119235 54119285 -130169377 + L2 LINE L2 3247 3301 -12 644 270 12 38 chr4 54119537 54119771 -130168891 + MIR SINE MIR 27 252 -10 308 304 13 0 chr4 54120029 54120108 -130168554 - L2 LINE L2 -54 3259 3180 795 235 109 9 chr4 54120823 54121044 -130167618 + MIR SINE MIR 10 252 -10 266 0 0 29 chr4 54121254 54121289 -130167373 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1986 115 7 4 chr4 54121291 54121569 -130167093 - AluSq SINE Alu -30 283 5 364 245 61 0 chr4 54121646 54121744 -130166918 + L1ME4a LINE L1 5969 6072 -49 22 70 0 0 chr4 54122103 54122146 -130166516 + AT_rich Low_complexity Low_complexity 1 43 0 408 254 146 16 chr4 54122735 54122755 -130165907 - L1MC/D LINE L1 -1998 5810 5794 3719 152 33 23 chr4 54122755 54123418 -130165244 + L1PB4 LINE L1 5484 6153 -3 408 254 146 16 chr4 54123418 54123582 -130165080 - L1MC/D LINE L1 -2014 5794 5602 1999 160 0 0 chr4 54123641 54123948 -130164714 + AluJb SINE Alu 1 307 -5 887 221 321 12 chr4 54124011 54124351 -130164311 - MLT1H LTR MaLR -104 445 1 659 153 27 0 chr4 54125951 54126062 -130162600 + L1MA5A LINE L1 6181 6294 -3 21 57 0 0 chr4 54126062 54126097 -130162565 + AT_rich Low_complexity Low_complexity 1 35 0 227 200 0 0 chr4 54126098 54126138 -130162524 - MIR SINE MIR -156 106 67 263 257 27 0 chr4 54126238 54126312 -130162350 - L1ME4a LINE L1 -72 6049 5974 2551 228 132 29 chr4 54126315 54127181 -130161481 + L2 LINE L2 1379 2333 -981 638 257 40 101 chr4 54127308 54127791 -130160871 + L2 LINE L2 2325 3283 -30 39 22 0 0 chr4 54128000 54128046 -130160616 + AT_rich Low_complexity Low_complexity 1 46 0 1801 118 52 24 chr4 54128046 54128335 -130160327 + AluSx SINE Alu 1 297 -15 338 277 45 0 chr4 54128335 54128447 -130160215 - L1ME4a LINE L1 -297 5824 5708 14490 198 65 8 chr4 54128486 54134763 -130153899 - L1PB1 LINE L1 0 6867 6 1278 165 40 53 chr4 54134814 54135136 -130153526 + MER33 DNA MER1_type 7 324 0 347 183 63 78 chr4 54135796 54135938 -130152724 - L1ME4a LINE L1 -234 5887 5748 1204 185 28 0 chr4 54136009 54136225 -130152437 - AluJo SINE Alu -90 222 1 270 277 59 0 chr4 54136250 54136351 -130152311 - L1ME4a LINE L1 -477 5644 5538 426 335 25 6 chr4 54136581 54136739 -130151923 + MIR SINE MIR 56 216 -46 1403 186 10 73 chr4 54136953 54137280 -130151382 - AluJo SINE Alu 0 308 1 261 408 32 0 chr4 54137687 54137844 -130150818 - L2 LINE L2 -4 3268 3107 1612 237 154 14 chr4 54137993 54138512 -130150150 + MLT1G1 LTR MaLR 2 593 -2 255 286 45 30 chr4 54138512 54138677 -130149985 - L2 LINE L2 -314 2958 2793 299 245 126 49 chr4 54138794 54138937 -130149725 + LTR50 LTR ERVL 481 634 -161 375 213 50 0 chr4 54138947 54139027 -130149635 + LTR33A LTR ERVL 433 516 -7 641 361 4 21 chr4 54139225 54139466 -130149196 - L2 LINE L2 -512 2802 2566 2402 100 0 0 chr4 54139485 54139796 -130148866 + AluY SINE Alu 1 311 0 306 288 131 7 chr4 54140463 54140616 -130148046 + MIR SINE MIR 78 249 -13 363 315 47 0 chr4 54140644 54140793 -130147869 - L2 LINE L2 -766 2548 2393 5823 183 4 4 chr4 54140898 54142267 -130146395 - L1P5 LINE L1 -629 5522 4154 8820 177 65 11 chr4 54142368 54143733 -130144929 - L1PBa LINE L1 -3359 3503 2213 2878 73 0 6 chr4 54143733 54144091 -130144571 - L1PA6 LINE L1 -2 6152 5797 8820 177 65 11 chr4 54144091 54145884 -130142778 - L1PBa LINE L1 -4649 2213 6 514 264 61 15 chr4 54146297 54146494 -130142168 + L1ME LINE L1 5610 5815 -306 800 190 98 16 chr4 54146546 54146730 -130141932 + L1MC1 LINE L1 6135 6333 0 244 252 9 56 chr4 54147052 54147159 -130141503 - L2 LINE L2 -1086 2228 2127 830 83 0 8 chr4 54147175 54147296 -130141366 + (GGAA)n Simple_repeat Simple_repeat 2 121 0 731 227 0 0 chr4 54147319 54147460 -130141202 - FLAM_C SINE Alu 0 143 3 833 161 0 8 chr4 54147741 54147865 -130140797 - AluJb SINE Alu -188 124 2 243 229 12 6 chr4 54147922 54148088 -130140574 + (TA)n Simple_repeat Simple_repeat 1 167 0 422 65 16 0 chr4 54148541 54148603 -130140059 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 22 0 0 0 chr4 54148904 54148926 -130139736 + AT_rich Low_complexity Low_complexity 1 22 0 459 229 62 21 chr4 54149591 54149735 -130138927 + MER103 DNA DNA 1 150 -16 702 238 28 66 chr4 54150375 54150556 -130138106 + MER5B DNA MER1_type 1 174 -4 222 37 0 0 chr4 54151346 54151373 -130137289 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 271 89 152 38 chr4 54151447 54151526 -130137136 + Charlie7 DNA MER1_type 2484 2571 -41 23 0 0 0 chr4 54151869 54151892 -130136770 + AT_rich Low_complexity Low_complexity 1 23 0 1891 148 61 91 chr4 54152242 54152464 -130136198 + L1MB8 LINE L1 5732 5935 -243 1595 202 3 3 chr4 54152464 54152785 -130135877 + AluJo SINE Alu 1 321 0 1891 148 61 91 chr4 54152785 54153021 -130135641 + L1MB8 LINE L1 5935 6177 -1 2379 96 0 3 chr4 54154561 54154862 -130133800 + AluSq SINE Alu 1 300 -13 21 36 0 0 chr4 54155138 54155166 -130133496 + AT_rich Low_complexity Low_complexity 1 28 0 241 294 73 9 chr4 54156488 54156597 -130132065 + MER5B DNA MER1_type 1 116 -62 330 240 52 31 chr4 54158620 54158716 -130129946 + MIR SINE MIR 13 110 -152 315 0 0 0 chr4 54159268 54159303 -130129359 + (CA)n Simple_repeat Simple_repeat 2 36 0 2290 121 0 0 chr4 54159480 54159785 -130128877 + AluSx SINE Alu 1 305 -7 1035 211 74 40 chr4 54159786 54160137 -130128525 + L1MC5 LINE L1 7200 7562 -399 2387 118 14 9 chr4 54160166 54160512 -130128150 - L1PA15 LINE L1 -4 6161 5814 5700 87 14 0 chr4 54160520 54161245 -130127417 - L1PA11 LINE L1 0 6174 5440 376 266 21 0 chr4 54161507 54161601 -130127061 - MER5B DNA MER1_type -70 108 13 204 158 0 26 chr4 54161816 54161854 -130126808 + MER5B DNA MER1_type 23 59 -119 360 149 176 0 chr4 54165263 54165337 -130123325 + L2 LINE L2 3227 3313 0 260 111 0 0 chr4 54165653 54165689 -130122973 + Alu SINE Alu 264 342 0 388 0 0 0 chr4 54165689 54165732 -130122930 + (TAAA)n Simple_repeat Simple_repeat 2 84 0 873 258 25 12 chr4 54165732 54165972 -130122690 - MIR SINE MIR -4 258 16 2220 117 0 37 chr4 54166856 54167180 -130121482 + AluSx SINE Alu 1 312 0 2649 102 92 8 chr4 54167254 54167453 -130121209 + MSTA LTR MaLR 1 182 -246 372 22 0 0 chr4 54167453 54167498 -130121164 + (TC)n Simple_repeat Simple_repeat 1 45 0 2649 102 92 8 chr4 54167498 54167691 -130120971 + MSTA LTR MaLR 182 426 -2 9178 164 42 14 chr4 54167693 54168151 -130120511 + MSTA-int LTR MaLR 1 445 -1206 828 137 15 15 chr4 54168151 54168282 -130120380 + FLAM_C SINE Alu 1 131 -2 9178 164 42 14 chr4 54168282 54169428 -130119234 + MSTA-int LTR MaLR 445 1649 -2 2635 162 2 14 chr4 54169430 54169863 -130118799 + MSTA LTR MaLR 1 428 0 27 0 0 0 chr4 54171271 54171298 -130117364 + AT_rich Low_complexity Low_complexity 1 27 0 3405 90 13 58 chr4 54171941 54172494 -130116168 + L1PB1 LINE L1 5624 6151 0 261 0 0 0 chr4 54173916 54173945 -130114717 + (T)n Simple_repeat Simple_repeat 1 29 0 270 0 0 0 chr4 54174535 54174565 -130114097 + (T)n Simple_repeat Simple_repeat 1 30 0 200 407 0 0 chr4 54175165 54175251 -130113411 + MIR SINE MIR 33 118 -144 3322 129 58 110 chr4 54176315 54177044 -130111618 - LTR8 LTR ERV1 0 691 1 220 250 0 0 chr4 54178050 54178106 -130110556 - L2 LINE L2 -3 3269 3214 518 149 0 0 chr4 54178818 54178915 -130109747 + AluSg/x SINE Alu 211 307 0 545 178 0 20 chr4 54180651 54180752 -130107910 + FLAM_A SINE Alu 8 106 -36 421 81 40 14 chr4 54180760 54180834 -130107828 + G-rich Low_complexity Low_complexity 1 76 0 663 160 0 48 chr4 54180837 54181024 -130107638 + GA-rich Low_complexity Low_complexity 2 179 0 595 192 6 28 chr4 54181051 54181233 -130107429 + GA-rich Low_complexity Low_complexity 1 178 0 818 136 51 0 chr4 54181687 54181805 -130106857 + FLAM_C SINE Alu 1 124 -19 23 0 0 0 chr4 54182461 54182484 -130106178 + AT_rich Low_complexity Low_complexity 1 23 0 277 262 60 0 chr4 54182543 54182627 -130106035 + L1MC/D LINE L1 5777 5865 -1943 2219 108 0 29 chr4 54182838 54183145 -130105517 + AluSx SINE Alu 1 298 -14 1634 220 80 91 chr4 54183562 54183744 -130104918 - MLT1E3 LTR MaLR 0 624 441 9726 26 3 223 chr4 54183744 54185521 -130103141 + SVA Other Other 1 1386 0 1634 220 80 91 chr4 54185521 54185964 -130102698 - MLT1E3 LTR MaLR -183 441 6 274 278 41 10 chr4 54186552 54186649 -130102013 + MER81 DNA DNA 15 114 0 305 225 8 0 chr4 54187825 54187945 -130100717 + (TA)n Simple_repeat Simple_repeat 2 122 0 189 178 0 0 chr4 54188543 54188588 -130100074 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 792 294 106 33 chr4 54188819 54189329 -130099333 - L2 LINE L2 -337 2977 2431 933 251 92 99 chr4 54189648 54190151 -130098511 + MLT1J LTR MaLR 1 499 -12 286 96 77 0 chr4 54190577 54190681 -130097981 + (TA)n Simple_repeat Simple_repeat 1 112 0 246 350 51 17 chr4 54190734 54190851 -130097811 + MER91A DNA MER1_type 42 162 -34 968 257 100 2 chr4 54192209 54192497 -130096165 + MER74B LTR ERVL 82 555 -67 1580 175 13 36 chr4 54192526 54192835 -130095827 - AluJb SINE Alu -10 302 1 724 167 0 9 chr4 54193002 54193116 -130095546 + AluJb SINE Alu 4 116 -196 810 108 0 0 chr4 54193116 54193218 -130095444 - AluSg/x SINE Alu -13 299 198 339 217 0 0 chr4 54194131 54194191 -130094471 - MER96 DNA MER1_type? 0 175 116 1687 241 57 63 chr4 54195048 54196016 -130092646 - L2 LINE L2 0 3313 2349 2171 129 7 7 chr4 54196019 54196328 -130092334 - AluSg SINE Alu -1 309 1 1633 144 0 8 chr4 54196339 54196589 -130092073 - AluJb SINE Alu -5 307 60 587 168 9 28 chr4 54196632 54196739 -130091923 + FLAM_A SINE Alu 16 120 -22 556 14 27 0 chr4 54196754 54196827 -130091835 + (TAGA)n Simple_repeat Simple_repeat 3 77 0 797 246 42 75 chr4 54196830 54197164 -130091498 - L2 LINE L2 -988 2326 2004 457 313 78 45 chr4 54197256 54197524 -130091138 - MLT1J LTR MaLR -23 488 212 3945 238 73 40 chr4 54198337 54198413 -130090249 + L1M4 LINE L1 2960 3032 -3114 1955 147 20 0 chr4 54198413 54198712 -130089950 + AluSx SINE Alu 1 305 -7 3945 238 73 40 chr4 54198712 54199122 -130089540 + L1M4 LINE L1 3032 3427 -2719 1774 157 11 7 chr4 54199122 54199409 -130089253 + AluJo SINE Alu 1 288 -24 3945 238 73 40 chr4 54199409 54199838 -130088824 + L1M4 LINE L1 3427 3841 -2305 1276 215 84 16 chr4 54199838 54200159 -130088503 + MER2 DNA MER2_type 2 344 0 3945 238 73 40 chr4 54200159 54200701 -130087961 + L1M4 LINE L1 3841 4466 -1680 658 146 58 51 chr4 54200704 54200841 -130087821 - LTR40a LTR ERVL -265 254 117 282 128 43 0 chr4 54200899 54200946 -130087716 - LTR40a LTR ERVL -354 165 117 190 333 17 0 chr4 54200954 54201014 -130087648 + L2 LINE L2 3215 3275 -38 182 360 22 11 chr4 54202626 54202715 -130085947 + MIR SINE MIR 54 143 -65 3894 151 5 61 chr4 54203043 54203634 -130085028 - L1PB1 LINE L1 -3 6148 5609 2211 122 3 3 chr4 54203634 54203946 -130084716 + AluSx SINE Alu 1 312 0 3894 151 5 61 chr4 54203946 54204129 -130084533 - L1PB1 LINE L1 -542 5609 5417 1132 164 55 0 chr4 54204397 54204598 -130084064 + L1MC1 LINE L1 6114 6325 -8 2031 152 0 10 chr4 54204633 54204943 -130083719 - AluJo SINE Alu -5 307 1 726 183 0 36 chr4 54205092 54205274 -130083388 + FLAM_C SINE Alu 2 178 0 353 171 14 0 chr4 54205320 54205390 -130083272 + L1ME4a LINE L1 6049 6119 -2 215 276 17 0 chr4 54206006 54206064 -130082598 + L2 LINE L2 3208 3266 -6 257 308 178 14 chr4 54206425 54206571 -130082091 - MIR3 SINE MIR -31 177 8 200 100 0 0 chr4 54207150 54207180 -130081482 + L2 LINE L2 3205 3234 -38 903 119 0 22 chr4 54208228 54208362 -130080300 + AluJo SINE Alu 12 142 -170 931 113 0 35 chr4 54209275 54209416 -130079246 + AluJb SINE Alu 1 136 -176 1934 135 9 41 chr4 54209416 54209709 -130078953 + AluSx SINE Alu 5 289 -23 312 27 0 0 chr4 54209709 54209746 -130078916 + (TA)n Simple_repeat Simple_repeat 1 37 0 1934 135 9 41 chr4 54209746 54209770 -130078892 + AluSx SINE Alu 289 312 0 27 29 0 0 chr4 54210128 54210162 -130078500 + AT_rich Low_complexity Low_complexity 1 34 0 1629 166 36 36 chr4 54210939 54211246 -130077416 + AluJo SINE Alu 5 311 -1 364 104 0 4 chr4 54211397 54211483 -130077179 - Alu SINE Alu 0 314 238 689 195 74 13 chr4 54212323 54212472 -130076190 - FAM SINE Alu -18 167 10 202 152 0 0 chr4 54214014 54214047 -130074615 + A-rich Low_complexity Low_complexity 1 33 0 292 192 0 110 chr4 54214397 54214470 -130074192 - MER66A LTR ERV1 -12 466 402 * 2232 144 24 13 chr4 54214467 54214843 -130073819 - MER41B LTR ERV1 -94 541 162 576 146 0 21 chr4 54214848 54214944 -130073718 - FRAM SINE Alu -15 161 68 429 157 155 44 chr4 54215064 54215258 -130073404 + LTR54B LTR ERV1 304 510 0 894 220 62 5 chr4 54215259 54215468 -130073194 + L1MC4 LINE L1 7386 7606 -436 1384 115 16 36 chr4 54215600 54215852 -130072810 - SVA Other Other -708 678 432 318 272 89 42 chr4 54216110 54216180 -130072482 + L1MCa LINE L1 2221 2286 -4140 290 301 0 0 chr4 54216180 54216273 -130072389 + A-rich Low_complexity Low_complexity 1 93 0 318 272 89 42 chr4 54216273 54216301 -130072361 + L1MCa LINE L1 2286 2420 -4006 1657 161 35 0 chr4 54216760 54217015 -130071647 - AluJb SINE Alu -16 296 33 1279 159 159 4 chr4 54217032 54217309 -130071353 + MER46B DNA MER2_type 2 196 -40 1421 161 7 36 chr4 54217932 54218237 -130070425 - pTR5 LTR ERV1 -1401 1037 742 2513 172 17 0 chr4 54218371 54218790 -130069872 - MSTB LTR MaLR 0 426 1 281 246 16 16 chr4 54219318 54219379 -130069283 + MLT1K LTR MaLR 182 242 -346 1194 163 10 5 chr4 54219395 54219604 -130069058 + AluJb SINE Alu 1 210 -102 2285 43 0 4 chr4 54219957 54220234 -130068428 - AluSx SINE Alu -36 276 1 398 77 19 0 chr4 54221247 54221299 -130067363 - AluSp SINE Alu -147 156 104 385 94 47 0 chr4 54221300 54221364 -130067298 + MER41A LTR ERV1 401 467 -87 603 214 0 0 chr4 54221385 54221483 -130067179 - AluSp SINE Alu -214 99 2 319 260 14 0 chr4 54221483 54221556 -130067106 + U3 snRNA snRNA 144 217 0 2038 126 0 3 chr4 54221570 54221879 -130066783 + AluSq SINE Alu 1 308 -5 4286 147 24 75 chr4 54222062 54223476 -130065186 - pTR5 LTR ERV1 0 2606 1524 1329 197 19 4 chr4 54223883 54224142 -130064520 - AluJb SINE Alu -17 295 33 1890 134 10 3 chr4 54224302 54224593 -130064069 + AluSx SINE Alu 3 295 -17 1195 105 47 0 chr4 54224595 54224786 -130063876 + L1MC2 LINE L1 6140 6339 -5 208 228 316 0 chr4 54224862 54224941 -130063721 + L2 LINE L2 3161 3264 -8 1535 184 14 3 chr4 54224980 54225274 -130063388 + AluJb SINE Alu 1 297 -15 747 262 48 77 chr4 54225342 54225497 -130063165 - MIR SINE MIR -2 260 113 1926 131 13 3 chr4 54225497 54225619 -130063043 + AluSx SINE Alu 1 120 -192 180 0 0 0 chr4 54225619 54225639 -130063023 + (CA)n Simple_repeat Simple_repeat 2 21 0 1926 131 13 3 chr4 54225639 54225814 -130062848 + AluSx SINE Alu 120 301 -11 747 262 48 77 chr4 54225814 54225906 -130062756 - MIR SINE MIR -149 113 20 1983 176 16 27 chr4 54226252 54226621 -130062041 - MLT1A1 LTR MaLR 0 365 1 391 290 65 0 chr4 54226948 54227055 -130061607 + MIR SINE MIR 35 148 -60 2011 104 7 0 chr4 54227074 54227352 -130061310 - AluSx SINE Alu -32 280 1 396 200 0 0 chr4 54227666 54227736 -130060926 + AluS SINE Alu 228 297 -5 21 0 0 0 chr4 54227736 54227757 -130060905 + AT_rich Low_complexity Low_complexity 1 21 0 432 315 194 21 chr4 54227835 54228216 -130060446 - L2 LINE L2 -660 2654 2208 583 231 8 17 chr4 54228218 54228335 -130060327 + FLAM_A SINE Alu 1 116 -17 198 0 0 0 chr4 54228335 54228357 -130060305 + (T)n Simple_repeat Simple_repeat 1 22 0 2290 97 0 3 chr4 54228368 54228676 -130059986 + AluSq SINE Alu 3 309 -4 2073 93 16 32 chr4 54228680 54228992 -130059670 + AluSq SINE Alu 7 313 0 209 369 30 42 chr4 54229133 54229241 -130059421 - L2 LINE L2 -1264 2050 1943 2091 92 16 7 chr4 54229241 54229545 -130059117 + AluSp SINE Alu 1 307 -6 209 369 30 42 chr4 54229545 54229604 -130059058 - L2 LINE L2 -1371 1943 1885 240 247 61 118 chr4 54229624 54229751 -130058911 - L2 LINE L2 -509 2805 2701 2271 75 0 32 chr4 54229751 54230059 -130058603 + AluSg SINE Alu 6 303 -7 240 247 61 118 chr4 54230059 54230210 -130058452 - L2 LINE L2 -613 2701 2543 519 303 91 30 chr4 54230220 54230451 -130058211 - MLT1K LTR MaLR -15 573 329 2011 125 0 7 chr4 54230486 54230791 -130057871 + AluSx SINE Alu 1 303 -9 2004 124 0 7 chr4 54231741 54232040 -130056622 - AluSx SINE Alu -2 310 14 1114 96 12 18 chr4 54232192 54232359 -130056303 - AluSg/x SINE Alu -18 294 129 277 304 0 0 chr4 54232674 54232743 -130055919 + MER102b DNA MER1_type 249 317 -24 458 274 73 27 chr4 54233036 54233423 -130055239 + L1MCc LINE L1 1317 1934 -4923 1577 229 19 36 chr4 54233454 54233816 -130054846 - MSTD LTR MaLR -2 394 39 1920 147 3 13 chr4 54235513 54235825 -130052837 + AluSx SINE Alu 1 309 -3 1871 161 3 0 chr4 54236050 54236355 -130052307 - AluJo SINE Alu -6 306 1 180 329 108 71 chr4 54236662 54237155 -130051507 + L2 LINE L2 2369 2879 -435 311 317 79 6 chr4 54237619 54237783 -130050879 + L2 LINE L2 2353 2528 -786 280 143 36 36 chr4 54240340 54240396 -130048266 - L2 LINE L2 -12 3301 3246 309 253 143 22 chr4 54240782 54240873 -130047789 - MER5B DNA MER1_type -3 175 74 278 312 177 41 chr4 54241050 54241316 -130047346 - L2 LINE L2 -15 3257 2956 222 207 121 17 chr4 54241405 54241463 -130047199 + MIR SINE MIR 120 183 -79 10664 138 15 12 chr4 54241836 54242104 -130046558 - L1MA2 LINE L1 -4 6300 6034 1798 156 10 0 chr4 54242104 54242399 -130046263 + AluSx SINE Alu 1 298 -14 10664 138 15 12 chr4 54242399 54245020 -130043642 - L1MA2 LINE L1 -270 6034 3401 1660 178 33 6 chr4 54245120 54245451 -130043211 + L1 LINE L1 4952 5291 -855 2106 109 0 13 chr4 54245696 54246008 -130042654 - AluSg SINE Alu 0 310 3 1451 237 35 48 chr4 54246576 54246854 -130041808 - MLT1H LTR MaLR -171 378 105 1962 104 4 7 chr4 54246854 54247134 -130041528 - AluSq SINE Alu -34 279 1 1451 237 35 48 chr4 54247134 54247231 -130041431 - MLT1H LTR MaLR -444 105 8 24 77 0 0 chr4 54247676 54247728 -130040934 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr4 54248001 54248022 -130040640 + AT_rich Low_complexity Low_complexity 1 21 0 690 340 32 40 chr4 54248503 54248906 -130039756 + MLT1K LTR MaLR 21 420 -168 4390 138 7 0 chr4 54249483 54250162 -130038500 - L1PA16 LINE L1 -6 6160 5477 956 158 11 21 chr4 54250162 54250352 -130038310 - AluSp SINE Alu -30 283 96 626 161 48 8 chr4 54250752 54250876 -130037786 + L1MB5 LINE L1 6038 6166 -8 416 308 82 0 chr4 54250968 54251127 -130037535 + MIR SINE MIR 60 231 -31 233 304 146 40 chr4 54251221 54251468 -130037194 - L2 LINE L2 -883 2431 2159 1946 136 0 0 chr4 54251874 54252153 -130036509 - AluSx SINE Alu -21 291 13 782 222 312 11 chr4 54252312 54252757 -130035905 - L2 LINE L2 -5 3308 2733 661 217 76 13 chr4 54253048 54253205 -130035457 + MLT1C LTR MaLR 258 424 -43 889 181 6 0 chr4 54253317 54253477 -130035185 - FRAM SINE Alu -21 155 1 259 356 21 26 chr4 54253487 54253681 -130034981 - L2 LINE L2 -257 3015 2823 1457 164 230 65 chr4 54253756 54254200 -130034462 + MLT2B1 LTR ERVL 1 517 -3 4373 131 242 113 chr4 54254247 54255481 -130033181 - pTR5 LTR ERV1 0 2438 1045 1822 149 7 3 chr4 54256127 54256435 -130032227 - AluSx SINE Alu -1 311 3 1372 157 0 46 chr4 54256443 54256767 -130031895 - AluSc SINE Alu 0 309 1 511 227 15 30 chr4 54257960 54258092 -130030570 + AluJo SINE Alu 5 134 -178 351 297 115 6 chr4 54258180 54258345 -130030317 + L2 LINE L2 3125 3307 -6 2236 106 0 0 chr4 54258401 54258703 -130029959 - AluSx SINE Alu -10 302 1 1600 167 0 0 chr4 54259052 54259310 -130029352 - AluSx SINE Alu -54 258 1 240 93 53 120 chr4 54259792 54259867 -130028795 - MLT1J LTR MaLR -2 509 440 772 179 76 0 chr4 54259906 54260051 -130028611 + AluJb SINE Alu 147 302 -10 2298 74 0 10 chr4 54260051 54260349 -130028313 + AluSp SINE Alu 1 295 -18 747 299 63 51 chr4 54260845 54261276 -130027386 - MLT1J LTR MaLR -57 454 19 1381 156 16 19 chr4 54261619 54261875 -130026787 - AluJo SINE Alu -45 267 13 2197 105 0 3 chr4 54262450 54262756 -130025906 - AluSg SINE Alu -5 305 1 2062 116 0 7 chr4 54262761 54263064 -130025598 - AluSx SINE Alu -10 302 2 1713 154 17 10 chr4 54263072 54263370 -130025292 - AluJo SINE Alu -2 310 11 277 400 56 9 chr4 54263535 54263750 -130024912 - MIR SINE MIR -4 258 34 2053 126 0 10 chr4 54263844 54264154 -130024508 - AluSg SINE Alu -2 308 2 269 26 0 26 chr4 54264154 54264193 -130024469 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 834 190 49 0 chr4 54264193 54264335 -130024327 - AluSg/x SINE Alu -29 281 133 235 203 61 81 chr4 54264341 54264489 -130024173 + (CATAC)n Simple_repeat Simple_repeat 2 146 0 983 162 0 0 chr4 54264489 54264643 -130024019 - AluSx SINE Alu -148 164 11 386 255 75 0 chr4 54264871 54264977 -130023685 - MER81 DNA DNA 0 114 1 1601 142 86 0 chr4 54265018 54265285 -130023377 - AluSx SINE Alu -22 290 1 212 323 40 20 chr4 54265288 54265387 -130023275 - L2 LINE L2 -1516 1798 1698 289 120 117 0 chr4 54265660 54265725 -130022937 + MIR SINE MIR 63 141 -67 2128 120 0 0 chr4 54265830 54266130 -130022532 - AluSx SINE Alu 0 312 13 341 189 81 0 chr4 54266138 54266212 -130022450 - L1M4 LINE L1 -885 5261 5182 1351 155 7 86 chr4 54266227 54266517 -130022145 + AluJb SINE Alu 18 284 -28 1801 154 0 3 chr4 54266686 54266971 -130021691 - AluSg SINE Alu -26 284 1 369 104 0 0 chr4 54266973 54267021 -130021641 - MSTD LTR MaLR -345 51 4 * 445 290 87 27 chr4 54267021 54267468 -130021194 + L1MEd LINE L1 1264 1836 -4590 306 240 137 5 chr4 54267597 54267783 -130020879 + L1MEd LINE L1 2129 2302 -4124 758 179 0 0 chr4 54267784 54267901 -130020761 + AluJb SINE Alu 2 118 -194 216 158 0 0 chr4 54267901 54267939 -130020723 + (CATA)n Simple_repeat Simple_repeat 2 39 0 2592 55 0 10 chr4 54268011 54268323 -130020339 - AluY SINE Alu -2 309 1 406 324 74 23 chr4 54268493 54268802 -130019860 - L1M4 LINE L1 -1086 5060 4736 2218 89 14 3 chr4 54268830 54269121 -130019541 + AluSp SINE Alu 1 294 -19 606 209 74 7 chr4 54269140 54269288 -130019374 - U3 snRNA snRNA -59 158 1 2206 105 10 3 chr4 54269798 54270094 -130018568 + AluSx SINE Alu 1 298 -14 2139 147 0 0 chr4 54270291 54270603 -130018059 + AluSx SINE Alu 1 312 0 194 356 11 0 chr4 54271467 54271554 -130017108 - L3 LINE CR1 -360 1217 1130 248 267 14 21 chr4 54271690 54271800 -130016862 - MIR SINE MIR -46 162 56 910 109 0 0 chr4 54271804 54271923 -130016739 + AluSq/x SINE Alu 1 119 -193 1371 155 15 0 chr4 54272547 54272753 -130015909 - AluSg/x SINE Alu -31 279 71 257 86 0 0 chr4 54272754 54272789 -130015873 - Alu SINE Alu -267 35 1 208 250 0 0 chr4 54273220 54273260 -130015402 + (TATG)n Simple_repeat Simple_repeat 4 43 0 194 58 96 19 chr4 54273404 54273456 -130015206 + T-rich Low_complexity Low_complexity 1 56 0 4799 27 0 0 chr4 54273456 54274004 -130014658 - L1PA3 LINE L1 -3 6152 5605 642 240 142 44 chr4 54274624 54274941 -130013721 - MER7A DNA MER2_type 0 346 1 238 154 0 0 chr4 54275021 54275060 -130013602 + MLT1J LTR MaLR 99 137 -374 781 177 24 0 chr4 54275132 54275256 -130013406 + AluJ SINE Alu 1 127 -175 631 158 16 0 chr4 54275257 54275384 -130013278 + GA-rich Low_complexity Low_complexity 2 130 0 1706 195 34 14 chr4 54275857 54276211 -130012451 - MLT1A1 LTR MaLR -2 363 3 2679 168 12 35 chr4 54276287 54276380 -130012282 + L1MA4 LINE L1 4130 4224 -1922 1938 148 16 13 chr4 54276380 54276691 -130011971 - AluJb SINE Alu 0 312 1 2679 168 12 35 chr4 54276691 54277175 -130011487 + L1MA4 LINE L1 4224 4694 -1452 756 237 0 6 chr4 54277175 54277344 -130011318 + AluJ SINE Alu 119 286 -26 3782 144 17 35 chr4 54277358 54278618 -130010044 + L1MA4 LINE L1 4696 5930 -370 1410 137 0 5 chr4 54278722 54278927 -130009735 + AluSc SINE Alu 106 309 0 640 105 89 24 chr4 54279066 54279190 -130009472 + L1MA8 LINE L1 6156 6287 -4 2158 120 7 0 chr4 54279279 54279578 -130009084 + AluSq SINE Alu 3 303 -10 2353 105 0 0 chr4 54281359 54281664 -130006998 - AluSg SINE Alu -5 305 1 824 230 86 30 chr4 54281719 54282023 -130006639 + MER5C DNA MER1_type 1 321 -3 1564 161 51 18 chr4 54282159 54282432 -130006230 - AluJb SINE Alu -28 284 3 2282 115 0 7 chr4 54282440 54282744 -130005918 - AluSx SINE Alu -10 302 1 479 246 0 56 chr4 54282808 54282987 -130005675 + CT-rich Low_complexity Low_complexity 5 173 0 1922 234 100 79 chr4 54283249 54283930 -130004732 + L1MC4 LINE L1 6441 7135 -673 553 212 0 0 chr4 54283930 54284029 -130004633 + FRAM SINE Alu 59 157 -19 1141 91 154 4 chr4 54284095 54284308 -130004354 + LTR54 LTR ERV1 5 280 -218 2079 144 3 10 chr4 54284308 54284620 -130004042 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr4 54285306 54285328 -130003334 + AT_rich Low_complexity Low_complexity 1 22 0 624 270 102 66 chr4 54285346 54285537 -130003125 + L1MC4a LINE L1 5298 5481 -2327 1870 185 0 3 chr4 54285537 54285835 -130002827 + AluJb SINE Alu 1 297 -15 624 270 102 66 chr4 54285835 54286220 -130002442 + L1MC4a LINE L1 5481 5895 -1913 224 316 23 53 chr4 54286520 54286653 -130002009 - MER5B DNA MER1_type -49 129 1 3538 137 8 0 chr4 54286798 54287325 -130001337 + LTR26B LTR ERV1 1 531 0 18014 151 85 15 chr4 54287355 54289362 -129999300 + L1M1 LINE L1 12 1877 -5688 1829 148 79 0 chr4 54289362 54289640 -129999022 - AluSx SINE Alu -12 300 1 18014 151 85 15 chr4 54289640 54290393 -129998269 + L1M1 LINE L1 1877 2576 -4989 2003 145 10 0 chr4 54290393 54290689 -129997973 + AluSx SINE Alu 1 299 -13 18014 151 85 15 chr4 54290689 54291090 -129997572 + L1M1 LINE L1 2576 3396 -4169 1876 160 3 7 chr4 54291094 54291400 -129997262 + AluSx SINE Alu 3 307 -5 3210 208 39 19 chr4 54291450 54292201 -129996461 + L1M1 LINE L1 3799 4564 -3001 1521 150 49 4 chr4 54292204 54292470 -129996192 + AluSx SINE Alu 5 282 -30 195 200 40 20 chr4 54292768 54292818 -129995844 + L2 LINE L2 3136 3186 -86 1595 133 0 0 chr4 54292820 54293045 -129995617 - AluSx SINE Alu -5 307 83 1959 182 17 28 chr4 54293046 54293404 -129995258 - MLT1A1 LTR MaLR -11 354 1 541 151 12 0 chr4 54293447 54293533 -129995129 - AluSx SINE Alu -225 88 2 297 109 0 0 chr4 54293605 54293651 -129995011 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 24 0 0 0 chr4 54293858 54293882 -129994780 + AT_rich Low_complexity Low_complexity 1 24 0 240 346 0 0 chr4 54294222 54294303 -129994359 + MIR SINE MIR 177 257 -5 399 249 315 10 chr4 54294638 54294835 -129993827 - MIR SINE MIR 0 262 6 757 215 13 13 chr4 54295212 54295370 -129993292 + FRAM SINE Alu 1 158 -8 1795 157 0 11 chr4 54296096 54296377 -129992285 + AluSx SINE Alu 1 278 -34 207 0 0 0 chr4 54296381 54296404 -129992258 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1726 150 10 48 chr4 54296660 54297017 -129991645 + AluJo SINE Alu 1 346 0 441 317 126 39 chr4 54297060 54297619 -129991043 - L2 LINE L2 0 3272 2687 2694 232 37 38 chr4 54297619 54298133 -129990529 + L1ME3A LINE L1 5455 5969 -201 3225 76 0 2 chr4 54298133 54298543 -129990119 + L1PA7 LINE L1 5736 6144 -10 2694 232 37 38 chr4 54298543 54298734 -129989928 + L1ME3A LINE L1 5969 6159 -11 2229 122 0 0 chr4 54298774 54299068 -129989594 - AluSq SINE Alu -19 294 1 949 194 5 11 chr4 54299208 54299394 -129989268 - AluSp SINE Alu -128 185 1 4196 169 28 28 chr4 54299394 54300257 -129988405 - L1P4 LINE L1 -666 5500 4652 1962 124 63 17 chr4 54300257 54300556 -129988106 + AluSq SINE Alu 1 313 0 4196 169 28 28 chr4 54300556 54300730 -129987932 - L1P4 LINE L1 -1514 4652 4479 446 264 0 11 chr4 54300965 54301143 -129987519 + CT-rich Low_complexity Low_complexity 3 178 0 181 211 56 78 chr4 54301145 54301235 -129987427 - MIR SINE MIR -84 124 37 1869 174 7 3 chr4 54301352 54301662 -129987000 + AluSx SINE Alu 1 311 -1 2242 108 0 3 chr4 54301686 54302014 -129986648 + AluSp SINE Alu 1 327 0 1695 169 3 33 chr4 54302419 54302721 -129985941 + AluJb SINE Alu 9 301 -11 659 196 0 36 chr4 54303074 54303212 -129985450 - FLAM_A SINE Alu 0 133 1 2119 121 7 0 chr4 54303267 54303557 -129985105 + AluSx SINE Alu 2 293 -19 284 328 38 15 chr4 54303979 54304110 -129984552 - L2 LINE L2 0 3272 3139 2018 105 0 0 chr4 54304713 54304971 -129983691 + AluSx SINE Alu 43 300 -12 269 196 131 75 chr4 54304971 54305078 -129983584 + MIR SINE MIR 144 256 -6 287 226 65 0 chr4 54305279 54305372 -129983290 + L2 LINE L2 2626 2724 -590 1541 175 0 81 chr4 54305510 54305842 -129982820 - AluJb SINE Alu -7 305 1 870 106 65 0 chr4 54305845 54305968 -129982694 - AluSg SINE Alu -179 131 1 549 125 0 0 chr4 54305987 54306067 -129982595 - AluS SINE Alu -229 84 5 243 259 24 24 chr4 54306090 54306175 -129982487 + Charlie8 DNA MER1_type 61 145 -2272 407 305 33 13 chr4 54306520 54306671 -129981991 - MIR SINE MIR -104 158 5 1443 177 35 124 chr4 54307002 54307082 -129981580 + MLT1A1 LTR MaLR 1 86 -279 1706 156 37 34 chr4 54307082 54307377 -129981285 + AluJo SINE Alu 1 296 -16 1443 177 35 124 chr4 54307377 54307692 -129980970 + MLT1A1 LTR MaLR 86 361 -4 1093 228 35 114 chr4 54308026 54308430 -129980232 + MLT1A2 LTR MaLR 3 374 0 1633 162 50 36 chr4 54308541 54308844 -129979818 - AluJo SINE Alu -5 307 1 1105 159 25 179 chr4 54309786 54309841 -129978821 + MLT1A2 LTR MaLR 1 63 -311 2101 128 3 3 chr4 54309841 54310138 -129978524 + AluSq SINE Alu 1 297 -16 1105 159 25 179 chr4 54310138 54310522 -129978140 + MLT1A2 LTR MaLR 63 372 -2 2296 119 0 0 chr4 54310889 54311199 -129977463 + AluSx SINE Alu 1 310 -2 1078 148 0 0 chr4 54311199 54311348 -129977314 + AluSg/x SINE Alu 126 274 -38 242 314 25 25 chr4 54311392 54311510 -129977152 + L1MB3 LINE L1 5970 6087 -96 210 330 0 0 chr4 54313989 54314077 -129974585 + C-rich Low_complexity Low_complexity 1 88 0 813 181 0 0 chr4 54319033 54319160 -129969502 + FLAM_C SINE Alu 1 127 -16 1382 175 0 32 chr4 54319665 54319917 -129968745 + AluJo SINE Alu 46 289 -23 2113 125 7 0 chr4 54319923 54320211 -129968451 + AluSg SINE Alu 1 290 -20 2246 87 43 0 chr4 54320575 54320875 -129967787 + AluSp SINE Alu 1 313 0 801 157 8 0 chr4 54321129 54321365 -129967297 + FRAM SINE Alu 1 135 0 250 235 0 29 chr4 54321489 54321557 -129967105 + AluJ/FLAM SINE Alu 1 66 -236 207 0 0 0 chr4 54321848 54321871 -129966791 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2569 60 0 0 chr4 54321891 54322189 -129966473 + AluY SINE Alu 5 302 -9 348 279 52 15 chr4 54322523 54322659 -129966003 - MIR SINE MIR -121 141 1 2191 134 0 0 chr4 54323709 54324014 -129964648 + AluSx SINE Alu 1 305 -7 8072 140 30 27 chr4 54325240 54326596 -129962066 - MER66-int LTR ERV1 -165 5781 4480 2336 111 0 9 chr4 54326596 54326911 -129961751 - AluSq SINE Alu -1 312 1 8072 140 30 27 chr4 54326911 54327878 -129960784 - MER66-int LTR ERV1 -1466 4480 3517 45067 38 2 14 chr4 54327894 54334114 -129954548 - L1PA3 LINE L1 0 6155 7 2060 143 14 11 chr4 54334120 54334483 -129954179 - MER66-int LTR ERV1 -2416 3530 3167 * 2326 171 23 86 chr4 54334476 54335130 -129953532 - MER66-int LTR ERV1 -3451 2495 565 2448 219 15 19 chr4 54335142 54335680 -129952982 - MER66-int LTR ERV1 -2671 2209 1674 1556 185 61 33 chr4 54335679 54335842 -129952820 - MER66-int LTR ERV1 -2482 4194 4037 * 2023 125 3 14 chr4 54335842 54336180 -129952482 + AluSq SINE Alu 1 335 0 1556 185 61 33 chr4 54336180 54336918 -129951744 - MER66-int LTR ERV1 -2639 4037 1220 1764 143 151 32 chr4 54336919 54337487 -129951175 - MER66-int LTR ERV1 -5248 1428 693 1929 151 0 7 chr4 54337542 54337826 -129950836 + AluJb SINE Alu 1 282 -30 198 0 0 0 chr4 54337829 54337851 -129950811 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 21 0 0 0 chr4 54337851 54337872 -129950790 + AT_rich Low_complexity Low_complexity 1 21 0 3204 153 10 61 chr4 54338223 54338694 -129949968 - MER41B LTR ERV1 -23 598 189 1327 179 21 45 chr4 54338694 54339011 -129949651 - AluJb SINE Alu 0 310 1 3204 153 10 61 chr4 54339011 54339189 -129949473 - MER41B LTR ERV1 -432 189 3 373 267 52 7 chr4 54339671 54339806 -129948856 - MIR SINE MIR -121 141 1 1194 127 0 6 chr4 54340516 54340682 -129947980 - AluSg SINE Alu -144 166 2 28 0 0 0 chr4 54342674 54342702 -129945960 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 54343255 54343276 -129945386 + GC_rich Low_complexity Low_complexity 1 21 0 495 214 0 0 chr4 54344127 54344225 -129944437 + U13 snRNA snRNA 5 102 -2 398 245 105 95 chr4 54344287 54344584 -129944078 + L1ME LINE L1 860 1153 -5157 2396 82 0 0 chr4 54344584 54344875 -129943787 + AluSg SINE Alu 2 292 -18 398 245 105 95 chr4 54344875 54345213 -129943449 + L1ME LINE L1 1153 1537 -4773 645 194 12 133 chr4 54345215 54345463 -129943199 + L1MC4 LINE L1 7820 8037 -5 759 298 107 41 chr4 54345617 54346171 -129942491 + L1ME LINE L1 4539 5185 -962 2210 103 17 3 chr4 54346171 54346471 -129942191 + AluSx SINE Alu 1 304 -8 759 298 107 41 chr4 54346471 54346836 -129941826 + L1ME LINE L1 5185 5524 -623 1771 173 0 39 chr4 54346836 54347142 -129941520 + AluJo SINE Alu 1 294 -18 22 0 0 0 chr4 54347142 54347164 -129941498 + AT_rich Low_complexity Low_complexity 1 22 0 1915 161 0 3 chr4 54347237 54347367 -129941295 + AluJb SINE Alu 1 130 -182 216 0 0 0 chr4 54347367 54347391 -129941271 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1915 161 0 3 chr4 54347391 54347552 -129941110 + AluJb SINE Alu 130 291 -21 194 294 118 12 chr4 54347959 54348044 -129940618 - L3 LINE CR1 -428 1149 1056 867 218 0 6 chr4 54348235 54348405 -129940257 - FRAM SINE Alu -7 169 1 398 213 18 148 chr4 54348405 54348464 -129940198 - L1MEc LINE L1 -4336 2060 1995 2269 108 3 7 chr4 54348464 54348769 -129939893 - AluSx SINE Alu -8 304 1 398 213 18 148 chr4 54348769 54348878 -129939784 - L1MEc LINE L1 -4401 1995 1914 1185 240 27 10 chr4 54348891 54349183 -129939479 - MER82 DNA MER2_type -6 647 351 4775 170 15 66 chr4 54349186 54349663 -129938999 + L1MB2 LINE L1 4441 4940 -1231 2450 87 7 0 chr4 54349663 54349973 -129938689 + AluSx SINE Alu 1 312 0 4775 170 15 66 chr4 54349973 54350048 -129938614 + L1MB2 LINE L1 4940 5017 -1154 2719 26 0 7 chr4 54350048 54350356 -129938306 + AluY SINE Alu 1 306 -5 4775 170 15 66 chr4 54350356 54350746 -129937916 + L1MB2 LINE L1 5017 5425 -746 2439 111 11 22 chr4 54350746 54350783 -129937879 + L1PA15 LINE L1 5793 5829 -336 1977 119 42 0 chr4 54350783 54351068 -129937594 + AluSg SINE Alu 2 298 -12 2439 111 11 22 chr4 54351068 54351401 -129937261 + L1PA15 LINE L1 5829 6159 -6 4775 170 15 66 chr4 54351401 54352223 -129936439 + L1MB2 LINE L1 5425 6117 -54 2194 119 0 0 chr4 54352223 54352518 -129936144 + AluSx SINE Alu 1 295 -17 4775 170 15 66 chr4 54352518 54352564 -129936098 + L1MB2 LINE L1 6117 6164 -7 263 191 3 80 chr4 54352881 54352965 -129935697 + MLT1C LTR MaLR 1 80 -310 21 36 0 0 chr4 54352991 54353019 -129935643 + AT_rich Low_complexity Low_complexity 1 28 0 2542 181 21 61 chr4 54353019 54353088 -129935574 + L1MB3 LINE L1 4982 5052 -1110 1899 152 7 3 chr4 54353088 54353377 -129935285 + AluJb SINE Alu 3 292 -20 2542 181 21 61 chr4 54353377 54353727 -129934935 + L1MB3 LINE L1 5052 5415 -747 1805 148 9 50 chr4 54353727 54354044 -129934618 + AluJb SINE Alu 1 304 -8 2542 181 21 61 chr4 54354044 54354543 -129934119 + L1MB3 LINE L1 5415 5942 -220 1289 253 38 33 chr4 54354545 54354941 -129933721 + LTR47B LTR ERVL 46 443 0 1344 146 19 27 chr4 54354941 54355201 -129933461 + L1MB3 LINE L1 5925 6182 -1 1529 196 85 3 chr4 54355228 54355534 -129933128 - MER82 DNA MER2_type -322 331 1 821 152 0 62 chr4 54355537 54355682 -129932980 + FLAM_C SINE Alu 4 139 -4 341 202 123 26 chr4 54355697 54355811 -129932851 - L1MEc LINE L1 -4486 1910 1786 475 320 13 7 chr4 54355811 54355964 -129932698 + L2 LINE L2 2915 3068 -245 452 236 35 35 chr4 54355975 54356119 -129932543 - MIR SINE MIR -55 207 64 347 283 51 58 chr4 54356315 54356453 -129932209 - L2 LINE L2 0 3272 3136 * 406 285 68 36 chr4 54356433 54356654 -129932008 + L3 LINE CR1 1277 1504 -73 546 278 106 72 chr4 54356722 54357164 -129931498 - LTR33 LTR ERVL -62 459 3 246 174 0 0 chr4 54358910 54358956 -129929706 + A-rich Low_complexity Low_complexity 4 49 0 225 0 0 0 chr4 54359297 54359322 -129929340 + (A)n Simple_repeat Simple_repeat 1 25 0 447 84 24 12 chr4 54359878 54359961 -129928701 + (TC)n Simple_repeat Simple_repeat 1 84 0 183 100 0 0 chr4 54360635 54360665 -129927997 + (T)n Simple_repeat Simple_repeat 1 30 0 22 35 0 0 chr4 54360996 54361025 -129927637 + AT_rich Low_complexity Low_complexity 1 29 0 213 210 32 16 chr4 54362292 54362354 -129926308 + CT-rich Low_complexity Low_complexity 1 63 0 261 0 0 0 chr4 54362858 54362887 -129925775 + (T)n Simple_repeat Simple_repeat 1 29 0 396 0 0 0 chr4 54363687 54363731 -129924931 + (TG)n Simple_repeat Simple_repeat 1 44 0 38 0 0 0 chr4 54364856 54364894 -129923768 + AT_rich Low_complexity Low_complexity 1 38 0 291 122 0 0 chr4 54366509 54366558 -129922104 + (CCG)n Simple_repeat Simple_repeat 1 49 0 207 245 0 0 chr4 54366566 54366619 -129922043 + (TGG)n Simple_repeat Simple_repeat 1 53 0 1603 204 3 0 chr4 54568931 54569225 -129719437 + L1PB4 LINE L1 5862 6156 0 245 265 60 28 chr4 54569365 54569648 -129719014 - L1MEc LINE L1 -4255 2141 1850 269 286 0 0 chr4 54569771 54569848 -129718814 - L1MEc LINE L1 -4756 1640 1564 839 172 44 49 chr4 54570068 54570271 -129718391 + MER20 DNA MER1_type 18 219 0 312 241 69 81 chr4 54570271 54570445 -129718217 + HAL1 LINE L1 22 193 -2314 522 299 174 17 chr4 54570713 54571057 -129717605 + HAL1 LINE L1 202 599 -1908 503 260 137 23 chr4 54571075 54571294 -129717368 + HAL1 LINE L1 683 926 -1581 446 49 16 0 chr4 54571395 54571456 -129717206 + AluY SINE Alu 238 299 -11 419 192 46 83 chr4 54571468 54571688 -129716974 - MIR SINE MIR -40 222 16 2104 107 13 3 chr4 54572205 54572503 -129716159 + AluSx SINE Alu 1 301 -11 197 298 167 18 chr4 54572977 54573091 -129715571 + MIR3 SINE MIR 30 160 -48 2355 119 30 0 chr4 54573194 54573530 -129715132 - THE1B LTR MaLR 0 364 19 194 289 0 0 chr4 54573995 54574033 -129714629 - MIR SINE MIR -21 241 204 638 168 7 0 chr4 54574039 54574176 -129714486 + (TCTA)n Simple_repeat Simple_repeat 2 139 0 1629 184 14 3 chr4 54574189 54574482 -129714180 + AluJo SINE Alu 1 296 -16 1955 141 3 7 chr4 54574484 54574789 -129713873 + AluSx SINE Alu 1 304 0 303 222 25 25 chr4 54574811 54574892 -129713770 - MIR SINE MIR -177 85 5 2524 251 67 3 chr4 54575144 54575890 -129712772 + L1M4 LINE L1 3028 3821 -2325 638 301 81 17 chr4 54576008 54576244 -129712418 - MIR SINE MIR -9 253 3 234 341 16 40 chr4 54577335 54577461 -129711201 - MIR3 SINE MIR -11 197 75 1328 70 18 12 chr4 54577653 54577881 -129710781 - L1M3 LINE L1 -631 5524 5293 2187 117 10 3 chr4 54577881 54578189 -129710473 - AluSg SINE Alu 0 310 1 192 40 0 0 chr4 54578210 54578235 -129710427 + (TG)n Simple_repeat Simple_repeat 2 26 0 4721 167 14 9 chr4 54578854 54580238 -129708424 - L1M2 LINE L1 -483 5817 4428 2097 116 13 16 chr4 54580460 54580763 -129707899 - AluSq SINE Alu -11 302 1 22 0 0 0 chr4 54581347 54581369 -129707293 + AT_rich Low_complexity Low_complexity 1 22 0 1688 160 3 53 chr4 54581890 54582208 -129706454 - AluJb SINE Alu -10 302 1 289 233 56 44 chr4 54582760 54582850 -129705812 - MIR SINE MIR 0 262 172 274 149 0 43 chr4 54582950 54582997 -129705665 - Alu SINE Alu -257 45 1 350 260 8 0 chr4 54583654 54583781 -129704881 + (TA)n Simple_repeat Simple_repeat 2 129 0 1508 234 49 0 chr4 54584841 54585166 -129703496 + MER58B DNA MER1_type 1 341 0 23 54 0 0 chr4 54585274 54585311 -129703351 + AT_rich Low_complexity Low_complexity 1 37 0 428 139 306 0 chr4 54585571 54585643 -129703019 - AluSg SINE Alu -215 95 2 326 282 81 32 chr4 54585777 54585901 -129702761 - L2 LINE L2 -2 3270 3141 1658 149 0 11 chr4 54586817 54587078 -129701584 + AluSx SINE Alu 35 292 -20 446 239 210 50 chr4 54588347 54588912 -129699750 - L2 LINE L2 0 3313 2578 692 266 46 79 chr4 54590293 54590406 -129698256 + MLT1K LTR MaLR 272 387 -201 2113 115 3 7 chr4 54590406 54590711 -129697951 - AluSx SINE Alu 0 312 9 692 266 46 79 chr4 54590711 54590901 -129697761 + MLT1K LTR MaLR 387 565 -23 243 0 0 0 chr4 54591397 54591424 -129697238 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 1580 108 0 5 chr4 54591424 54591632 -129697030 - AluSx SINE Alu -28 282 76 584 277 186 5 chr4 54591941 54592161 -129696501 - MIR SINE MIR 0 262 3 261 238 24 24 chr4 54592217 54592301 -129696361 - MLT1L LTR MaLR -310 305 222 386 248 14 126 chr4 54592539 54592753 -129695909 - L2 LINE L2 -978 2336 2147 1062 263 41 32 chr4 54593518 54593590 -129695072 + HERVL LTR ERVL 2855 2925 -2729 2065 103 0 43 chr4 54593590 54593914 -129694748 + AluSg SINE Alu 1 310 0 1062 263 41 32 chr4 54593914 54594183 -129694479 + HERVL LTR ERVL 2925 3199 -2455 3506 100 8 0 chr4 54594283 54594772 -129693890 - L1MA2 LINE L1 -371 5933 5441 2726 162 12 10 chr4 54594868 54595440 -129693222 - L1MA2 LINE L1 -743 5403 4858 481 135 27 0 chr4 54595813 54595887 -129692775 - AluSx SINE Alu -236 77 2 566 310 71 26 chr4 54596608 54596834 -129691828 - MIR SINE MIR -2 260 25 280 264 109 45 chr4 54596872 54596982 -129691680 - MLT1J LTR MaLR -13 498 382 745 217 139 17 chr4 54597558 54597779 -129690883 - MLT1J1 LTR MaLR -79 371 123 277 324 63 7 chr4 54598070 54598212 -129690450 + MIR SINE MIR 56 205 -57 682 300 195 12 chr4 54598237 54598637 -129690025 - L3 LINE CR1 -86 1491 1019 790 258 50 111 chr4 54598647 54599189 -129689473 - MLT1J LTR MaLR 0 511 3 525 266 70 25 chr4 54599466 54599665 -129688997 + L1ME LINE L1 5611 5818 -303 2426 171 0 59 chr4 54599673 54599824 -129688838 + Tigger2a DNA MER2_type 1 159 -2549 1819 109 128 8 chr4 54599824 54600090 -129688572 - AluSg SINE Alu -2 298 1 2426 171 0 59 chr4 54600090 54600399 -129688263 + Tigger2a DNA MER2_type 159 434 0 364 175 105 88 chr4 54601870 54601984 -129686678 - L2 LINE L2 -5 3308 3193 1190 247 97 43 chr4 54602038 54602503 -129686159 + MLT1H1 LTR MaLR 66 555 0 2198 35 28 18 chr4 54602679 54602964 -129685698 - AluY SINE Alu -23 288 1 1721 140 146 16 chr4 54603927 54604248 -129684414 - MLT1A1 LTR MaLR -2 363 1 513 217 7 63 chr4 54604836 54604944 -129683718 - MIR SINE MIR -60 202 102 1994 137 74 91 chr4 54604944 54605374 -129683288 + MSTA LTR MaLR 2 424 -4 513 217 7 63 chr4 54605374 54605408 -129683254 - MIR SINE MIR -160 102 68 419 259 110 53 chr4 54605418 54605646 -129683016 - MLT1K LTR MaLR -19 569 329 448 231 66 25 chr4 54606590 54606711 -129681951 + MIR SINE MIR 16 141 -67 369 219 122 16 chr4 54607077 54607200 -129681462 - L1ME3A LINE L1 -300 5870 5735 698 253 16 83 chr4 54607432 54607685 -129680977 + MIR SINE MIR 13 248 -14 222 91 0 0 chr4 54607700 54607733 -129680929 + (TG)n Simple_repeat Simple_repeat 1 33 0 210 71 0 0 chr4 54607733 54607761 -129680901 + (GA)n Simple_repeat Simple_repeat 2 29 0 228 211 0 0 chr4 54608510 54608562 -129680100 + MIR SINE MIR 151 202 -60 187 173 39 0 chr4 54608588 54608640 -129680022 + (TA)n Simple_repeat Simple_repeat 1 54 0 2417 67 10 0 chr4 54608758 54609057 -129679605 - AluSx SINE Alu -10 302 1 1341 198 7 25 chr4 54609663 54609946 -129678716 + THE1B-int LTR MaLR 1374 1651 0 1734 167 35 0 chr4 54609964 54610246 -129678416 + THE1B LTR MaLR 1 292 -72 2118 157 34 14 chr4 54610246 54610602 -129678060 + THE1B LTR MaLR 1 363 -1 6765 51 4 1 chr4 54611678 54612787 -129675875 + L1P2 LINE L1 4530 5642 -512 423 185 0 0 chr4 54612785 54612866 -129675796 - L1P2 LINE L1 -721 5433 5353 * 264 303 9 0 chr4 54612866 54612975 -129675687 + (CCCCG)n Simple_repeat Simple_repeat 3 112 0 * 273 188 27 27 chr4 54612894 54613157 -129675505 + (CACCC)n Simple_repeat Simple_repeat 1 263 0 260 266 43 32 chr4 54613292 54613386 -129675276 - L2 LINE L2 -38 3275 3181 454 274 95 12 chr4 54613424 54613592 -129675070 - MIR SINE MIR -41 221 40 614 265 148 22 chr4 54613592 54613815 -129674847 + MIR SINE MIR 12 262 0 2378 88 10 0 chr4 54614338 54614646 -129674016 - AluSp SINE Alu -2 311 1 1348 180 29 0 chr4 54615392 54615637 -129673025 - Tigger1 DNA MER2_type -2166 252 1 2451 42 0 3 chr4 54615884 54616169 -129672493 - AluY SINE Alu -11 300 17 21 0 0 0 chr4 54616771 54616792 -129671870 + AT_rich Low_complexity Low_complexity 1 21 0 9977 89 10 4 chr4 54616892 54618403 -129670259 + L1P3 LINE L1 3955 5470 -684 602 41 0 0 chr4 54618403 54618476 -129670186 - L1PA4 LINE L1 -2 6153 6081 2047 166 32 56 chr4 54618836 54619210 -129669452 + MLT1A1 LTR MaLR 1 365 0 375 214 48 12 chr4 54619838 54619922 -129668740 - MER45A DNA AcHobo -1 177 91 1677 156 10 30 chr4 54619922 54620224 -129668438 + AluJb SINE Alu 1 296 -16 338 110 12 73 chr4 54620227 54620309 -129668353 + MLT1C LTR MaLR 147 223 -167 * 587 215 37 6 chr4 54620300 54620463 -129668199 + MLT1C LTR MaLR 188 355 -112 1377 160 0 0 chr4 54620463 54620676 -129667986 + AluSq SINE Alu 1 213 -100 243 179 0 90 chr4 54620827 54620905 -129667757 - L1 LINE L1 -1895 4251 4181 2312 86 0 7 chr4 54620929 54621221 -129667441 - AluY SINE Alu -21 290 1 1305 252 140 2 chr4 54621222 54621659 -129667003 - Charlie7 DNA MER1_type -372 2240 1744 458 275 99 30 chr4 54621656 54621889 -129666773 - Charlie7 DNA MER1_type -2018 594 346 * 2181 122 13 3 chr4 54622125 54622429 -129666233 - AluSx SINE Alu 0 312 6 243 275 101 0 chr4 54622663 54622732 -129665930 + L1MEd LINE L1 553 628 -5491 422 183 153 0 chr4 54623206 54623337 -129665325 - MER5C DNA MER1_type -54 270 120 4868 177 23 34 chr4 54623449 54623895 -129664767 + L1MC3 LINE L1 6814 7263 -522 2336 115 72 26 chr4 54623895 54624242 -129664420 + THE1B LTR MaLR 1 363 -1 4868 177 23 34 chr4 54624242 54624777 -129663885 + L1MC3 LINE L1 7263 7785 0 1873 152 76 60 chr4 54624831 54625213 -129663449 + MLT1B LTR MaLR 1 388 -2 2105 125 3 0 chr4 54625570 54625867 -129662795 + AluY SINE Alu 1 298 -13 16431 57 4 0 chr4 54626054 54628176 -129660486 + L1P2 LINE L1 3308 5438 -716 1352 157 10 10 chr4 54628280 54628593 -129660069 + Ricksha DNA DNA 2990 3254 -43 1967 228 19 53 chr4 54628602 54629023 -129659639 - L1M4 LINE L1 -1067 5079 4688 2661 42 0 3 chr4 54629023 54629331 -129659331 - AluY SINE Alu -4 307 1 1967 228 19 53 chr4 54629331 54629585 -129659077 - L1M4 LINE L1 -1458 4688 4427 4085 240 26 20 chr4 54629591 54630814 -129657848 - L1 LINE L1 -2155 3991 2762 1545 68 0 0 chr4 54630914 54631121 -129657541 - L1P LINE L1 -814 5332 5126 4345 62 0 0 chr4 54631121 54631634 -129657028 + L1PA5 LINE L1 5639 6154 0 181 359 76 33 chr4 54632019 54632111 -129656551 + L2 LINE L2 3117 3212 -60 2747 203 18 4 chr4 54632327 54632825 -129655837 - MLT1D LTR MaLR 0 505 1 1132 188 16 0 chr4 54632849 54633035 -129655627 + MER5A DNA MER1_type 1 189 0 188 218 51 77 chr4 54633961 54634039 -129654623 - L2 LINE L2 -2792 522 447 1966 134 7 51 chr4 54634334 54634807 -129653855 - L1P LINE L1 -741 5420 4982 2237 176 41 19 chr4 54634809 54635275 -129653387 - L1MDa LINE L1 -4399 2141 1666 * 3790 223 129 9 chr4 54635271 54635761 -129652901 - L1MDa LINE L1 -5483 1057 628 1342 174 54 120 chr4 54635761 54636152 -129652510 - MLT1A1 LTR MaLR 0 365 1 3790 223 129 9 chr4 54636152 54636580 -129652082 - L1MDa LINE L1 -5912 628 28 310 319 49 19 chr4 54637684 54637892 -129650770 - L2 LINE L2 -3 3269 3004 865 248 53 4 chr4 54639155 54639381 -129649281 + MIR SINE MIR 17 253 -9 356 258 305 6 chr4 54639830 54639997 -129648665 + MIR SINE MIR 42 258 -4 198 283 217 0 chr4 54640075 54640195 -129648467 - L2 LINE L2 0 3313 3168 302 243 9 75 chr4 54640217 54640324 -129648338 + MER91B DNA MER1_type 20 119 -71 385 216 93 21 chr4 54640346 54640443 -129648219 + MER91B DNA MER1_type 83 186 -4 24 0 0 0 chr4 54640957 54640981 -129647681 + AT_rich Low_complexity Low_complexity 1 24 0 319 289 117 15 chr4 54642832 54643029 -129645633 + MIR SINE MIR 46 262 0 297 308 77 0 chr4 54643299 54643390 -129645272 + MIR SINE MIR 34 131 -77 251 286 0 0 chr4 54643519 54643582 -129645080 + L2 LINE L2 3246 3308 -5 248 349 66 9 chr4 54643690 54643796 -129644866 + MIR3 SINE MIR 69 180 -28 266 211 0 0 chr4 54644019 54644071 -129644591 - MER94 DNA DNA -80 54 3 463 269 167 11 chr4 54644211 54644397 -129644265 + L3 LINE CR1 1130 1344 -233 625 110 0 35 chr4 54644524 54644797 -129643865 + AluSx SINE Alu 1 312 0 386 109 16 16 chr4 54645175 54645239 -129643423 - Tigger4(Zombi) DNA MER2_type -2 2729 2666 245 265 133 20 chr4 54646573 54646724 -129641938 + MER3 DNA MER1_type 1 168 -41 203 196 39 0 chr4 54647932 54647983 -129640679 + CT-rich Low_complexity Low_complexity 5 57 0 1104 142 123 97 chr4 54648537 54648846 -129639816 + MER33 DNA MER1_type 8 324 0 643 300 128 50 chr4 54648917 54649186 -129639476 - L1MC4a LINE L1 -1894 5914 5597 2060 128 0 0 chr4 54649186 54649474 -129639188 + AluSc SINE Alu 1 288 -21 643 300 128 50 chr4 54649474 54649641 -129639021 - L1MC4a LINE L1 -2211 5597 5444 1986 123 7 0 chr4 54649700 54649977 -129638685 + AluSx SINE Alu 1 279 -33 432 0 0 0 chr4 54649977 54650025 -129638637 + (CA)n Simple_repeat Simple_repeat 1 48 0 415 273 35 48 chr4 54650210 54650356 -129638306 - MIR SINE MIR -58 204 61 481 281 81 5 chr4 54650381 54650566 -129638096 + MIR SINE MIR 46 244 -18 310 130 0 43 chr4 54650567 54650636 -129638026 + (TATG)n Simple_repeat Simple_repeat 3 68 0 2458 88 0 0 chr4 54652231 54652538 -129636124 - AluSg SINE Alu -3 307 1 256 262 67 62 chr4 54654770 54654961 -129633701 + MIR SINE MIR 5 191 -65 189 359 0 0 chr4 54655525 54655589 -129633073 - L2 LINE L2 0 3272 3209 * 431 280 91 14 chr4 54655575 54655718 -129632944 - MIR SINE MIR -32 230 77 * 433 285 116 45 chr4 54655713 54655980 -129632682 - L2 LINE L2 -523 2791 2506 230 383 175 0 chr4 54656121 54656241 -129632421 - MIR SINE MIR -97 165 25 184 229 0 0 chr4 54656343 54656378 -129632284 - L2 LINE L2 -21 3292 3258 423 331 78 20 chr4 54657786 54658031 -129630631 - MIR SINE MIR -2 260 2 410 342 84 14 chr4 54659704 54659979 -129628683 + L3b LINE CR1 1104 1397 -186 2268 109 13 0 chr4 54662488 54662791 -129625871 - AluSx SINE Alu -5 307 1 810 260 11 105 chr4 54663697 54664059 -129624603 + L2 LINE L2 2974 3301 -12 21 0 0 0 chr4 54665387 54665408 -129623254 + AT_rich Low_complexity Low_complexity 1 21 0 2160 119 0 28 chr4 54665940 54666260 -129622402 + AluSx SINE Alu 1 311 -1 21 57 0 0 chr4 54669234 54669269 -129619393 + AT_rich Low_complexity Low_complexity 1 35 0 448 337 141 0 chr4 54669479 54669642 -129619020 + MER91A DNA MER1_type 1 186 -10 510 181 63 8 chr4 54669942 54670069 -129618593 - MER94 DNA DNA 0 134 1 1802 153 0 29 chr4 54671060 54671414 -129617248 - AluJo SINE Alu 0 312 1 184 296 0 0 chr4 54671507 54671551 -129617111 - L2 LINE L2 -1282 2032 1989 386 258 140 59 chr4 54671702 54671888 -129616774 - MIR SINE MIR -3 259 59 2813 85 15 3 chr4 54673595 54673984 -129614678 - L1PA10 LINE L1 -10 6158 5765 223 364 0 54 chr4 54675054 54675183 -129613479 - MIR SINE MIR -79 183 62 3178 96 0 4 chr4 54676059 54676509 -129612153 + L1PA13 LINE L1 5710 6157 -6 867 140 126 5 chr4 54676561 54676768 -129611894 + L1MDa LINE L1 2129 2360 -4180 * 14417 101 4 1 chr4 54676763 54678992 -129609670 + L1P LINE L1 1430 3665 -2481 241 220 0 20 chr4 54679099 54679149 -129609513 - L2 LINE L2 -61 3252 3204 222 259 67 118 chr4 54679157 54679292 -129609370 + L2 LINE L2 3145 3272 0 189 280 40 27 chr4 54680435 54680510 -129608152 - L2 LINE L2 -13 3259 3184 1371 130 29 42 chr4 54681012 54681251 -129607411 - MER46A DNA MER2_type 0 236 1 213 183 37 49 chr4 54682976 54683003 -129605659 + (TAA)n Simple_repeat Simple_repeat 1 27 -54 809 152 8 15 chr4 54683003 54683135 -129605527 + FLAM_C SINE Alu 2 132 -1 213 183 37 49 chr4 54683135 54683189 -129605473 + (TAA)n Simple_repeat Simple_repeat 27 81 0 682 276 92 18 chr4 54683329 54683546 -129605116 - MIR SINE MIR -23 239 7 257 221 39 10 chr4 54683615 54683719 -129604943 + CT-rich Low_complexity Low_complexity 3 109 0 2282 100 3 0 chr4 54684015 54684306 -129604356 - AluSq SINE Alu -21 292 1 581 219 0 37 chr4 54684528 54684692 -129603970 - MER103 DNA DNA -7 159 2 1726 243 134 20 chr4 54686001 54686605 -129602057 + L2 LINE L2 2060 2732 -582 213 256 25 0 chr4 54686727 54686780 -129601882 + MIR SINE MIR 12 67 -141 2540 97 21 90 chr4 54687071 54687448 -129601214 + Tigger2a DNA MER2_type 1 342 -2366 2439 88 0 3 chr4 54687448 54687754 -129600908 - AluSq SINE Alu -8 305 1 2540 97 21 90 chr4 54687754 54687842 -129600820 + Tigger2a DNA MER2_type 342 434 0 214 328 33 0 chr4 54688036 54688097 -129600565 - MIR SINE MIR -194 68 6 2325 185 157 0 chr4 54688333 54688842 -129599820 - Ricksha DNA DNA -2649 597 9 792 233 106 33 chr4 54688852 54689165 -129599497 + L1MD1 LINE L1 5082 5411 -768 2019 147 10 48 chr4 54689165 54689470 -129599192 + L1MD1 LINE L1 5861 6150 -92 2226 99 0 0 chr4 54689470 54689794 -129598868 - AluSg SINE Alu 0 324 1 2019 147 10 48 chr4 54689794 54689883 -129598779 + L1MD1 LINE L1 6150 6241 -1 792 233 106 33 chr4 54689883 54689909 -129598753 + L1MD1 LINE L1 5411 5434 -745 23 0 0 0 chr4 54690517 54690540 -129598122 + AT_rich Low_complexity Low_complexity 1 23 0 3426 67 2 7 chr4 54690575 54691021 -129597641 + MLT2A1 LTR ERVL 1 444 0 577 289 28 82 chr4 54692024 54692224 -129596438 - MLT1J LTR MaLR -4 507 337 2045 158 2 104 chr4 54692224 54692685 -129595977 - MLT2D LTR ERVL 0 414 1 577 289 28 82 chr4 54692685 54692875 -129595787 - MLT1J LTR MaLR -174 337 138 584 290 80 21 chr4 54692964 54693491 -129595171 - L1MEd LINE L1 -4862 1257 700 229 303 13 0 chr4 54694544 54694620 -129594042 - MIR3 SINE MIR -2 206 130 16507 110 23 8 chr4 54694722 54696853 -129591809 + L1P LINE L1 11 2187 -3959 2429 80 0 3 chr4 54696853 54697153 -129591509 + AluY SINE Alu 1 299 -12 16507 110 23 8 chr4 54697153 54697583 -129591079 + L1P LINE L1 2187 2609 -3537 2322 48 6 0 chr4 54697596 54697927 -129590735 + L1P LINE L1 3010 3342 -2804 315 85 0 0 chr4 54698775 54698822 -129589840 + (TG)n Simple_repeat Simple_repeat 2 48 0 240 226 0 0 chr4 54700389 54700451 -129588211 + (TG)n Simple_repeat Simple_repeat 2 63 0 2045 117 7 7 chr4 54700954 54701244 -129587418 + AluSq SINE Alu 13 302 -11 2180 118 7 0 chr4 54703736 54704033 -129584629 + AluSx SINE Alu 1 299 -13 957 289 173 6 chr4 54704132 54704590 -129584072 - L2 LINE L2 0 3313 2777 233 185 77 77 chr4 54705567 54705632 -129583030 - L2 LINE L2 0 3313 3249 291 146 0 0 chr4 54705634 54705689 -129582973 + (TG)n Simple_repeat Simple_repeat 2 56 0 221 354 12 12 chr4 54707606 54707688 -129580974 - MER5A DNA MER1_type -107 82 1 825 152 0 8 chr4 54707748 54707880 -129580782 - FLAM_C SINE Alu -12 131 1 301 261 157 0 chr4 54709823 54709957 -129578705 + MIR3 SINE MIR 46 200 -8 758 173 0 0 chr4 54711328 54711455 -129577207 - FLAM_C SINE Alu -6 127 1 351 0 0 0 chr4 54711512 54711551 -129577111 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 252 204 0 0 chr4 54711554 54711598 -129577064 - FLAM SINE Alu -13 120 77 200 91 0 30 chr4 54712099 54712132 -129576530 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 618 245 154 19 chr4 54712265 54712473 -129576189 + MIR SINE MIR 1 236 -26 384 203 54 0 chr4 54712587 54712661 -129576001 - L2 LINE L2 -2 3270 3193 4609 47 0 0 chr4 54712923 54713516 -129575146 + L1PA5 LINE L1 4388 4980 -1166 6453 36 13 0 chr4 54713616 54714394 -129574268 + L1PA5 LINE L1 5364 6151 -3 272 252 48 10 chr4 54714403 54714506 -129574156 + L1MC5 LINE L1 7835 7941 -20 329 269 40 86 chr4 54714599 54714774 -129573888 + MIR SINE MIR 86 252 -10 897 188 0 0 chr4 54714877 54715031 -129573631 + FRAM SINE Alu 1 154 -22 402 213 140 29 chr4 54715947 54716083 -129572579 - MIR SINE MIR -2 260 110 759 159 0 32 chr4 54716623 54716749 -129571913 - FLAM_C SINE Alu -17 126 5 238 263 0 0 chr4 54716840 54716897 -129571765 - MIR SINE MIR -21 241 185 216 278 0 37 chr4 54716907 54716961 -129571701 - MIR SINE MIR -210 52 1 648 250 11 69 chr4 54717030 54717290 -129571372 - MIR SINE MIR -3 259 15 2551 161 16 9 chr4 54718425 54718848 -129569814 + MSTB LTR MaLR 1 426 0 1305 283 58 28 chr4 54718892 54719320 -129569342 - MLT1K LTR MaLR -42 546 106 611 307 16 5 chr4 54720628 54720817 -129567845 - MIR SINE MIR -8 254 64 417 20 0 0 chr4 54721090 54721140 -129567522 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 333 246 82 22 chr4 54721555 54721689 -129566973 + L1ME4a LINE L1 5593 5734 -2074 656 273 37 11 chr4 54721765 54721993 -129566669 + MIR SINE MIR 3 238 -24 22 35 0 0 chr4 54722021 54722050 -129566612 + AT_rich Low_complexity Low_complexity 1 29 0 677 207 218 0 chr4 54722058 54722251 -129566411 - L1ME1 LINE L1 0 6166 5932 11164 73 5 0 chr4 54722264 54724430 -129564232 - L1PA6 LINE L1 0 6154 3982 23738 116 17 26 chr4 54724430 54728222 -129560440 - L1PA6 LINE L1 -2379 3767 11 301 151 96 27 chr4 54728232 54728305 -129560357 - L1ME1 LINE L1 -220 5946 5869 1080 176 0 0 chr4 54728308 54728484 -129560178 - AluSg/x SINE Alu 0 310 135 1463 188 84 3 chr4 54728484 54728792 -129559870 - L1ME1 LINE L1 -291 5875 5543 2006 83 0 136 chr4 54728833 54729193 -129559469 + AluY SINE Alu 1 311 0 1292 154 9 14 chr4 54729205 54729419 -129559243 + AluJb SINE Alu 1 213 -99 2071 131 10 0 chr4 54730026 54730323 -129558339 - 7SLRNA srpRNA srpRNA -15 305 6 1018 201 50 14 chr4 54730365 54730872 -129557790 - L1ME3 LINE L1 0 6162 5551 1565 181 27 17 chr4 54730903 54731196 -129557466 - AluJo SINE Alu -16 296 1 195 188 0 0 chr4 54733361 54733409 -129555253 + (TAA)n Simple_repeat Simple_repeat 1 48 0 24 53 0 0 chr4 54734406 54734444 -129554218 + AT_rich Low_complexity Low_complexity 1 38 0 388 227 102 8 chr4 54734450 54734578 -129554084 + L1ME4a LINE L1 5968 6107 -14 878 289 8 16 chr4 54734602 54734851 -129553811 - MIR SINE MIR 0 262 16 285 225 28 14 chr4 54734981 54735052 -129553610 + (CACCAT)n Simple_repeat Simple_repeat 1 72 0 2175 78 30 14 chr4 54735080 54735375 -129553287 + AluSx SINE Alu 1 300 -12 2014 122 31 0 chr4 54736244 54736530 -129552132 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr4 54737011 54737032 -129551630 + AT_rich Low_complexity Low_complexity 1 21 0 286 273 159 23 chr4 54737295 54737427 -129551235 + MIR SINE MIR 101 250 -12 240 238 164 33 chr4 54737406 54737528 -129551134 + MIR3 SINE MIR 5 142 -66 * 194 237 51 0 chr4 54737562 54737621 -129551041 + L2 LINE L2 3210 3271 -1 2430 73 3 13 chr4 54738318 54738632 -129550030 + AluY SINE Alu 1 311 0 21 36 0 0 chr4 54738864 54738892 -129549770 + AT_rich Low_complexity Low_complexity 1 28 0 1109 132 6 6 chr4 54739632 54739799 -129548863 + L1PB4 LINE L1 5990 6156 0 403 345 88 53 chr4 54740026 54740697 -129547965 + L2 LINE L2 2596 3272 0 6020 152 12 34 chr4 54740922 54741913 -129546749 - L1MA7 LINE L1 0 6877 5866 2076 142 3 3 chr4 54741913 54742224 -129546438 - AluJo SINE Alu -1 311 1 6020 152 12 34 chr4 54742224 54743178 -129545484 - L1MA7 LINE L1 -1011 5866 4952 3127 70 0 0 chr4 54743178 54743563 -129545099 - L1PA5 LINE L1 0 6154 5770 668 208 8 0 chr4 54744228 54744348 -129544314 + FRAM SINE Alu 21 141 -35 1205 49 0 0 chr4 54745403 54745546 -129543116 - L1P2 LINE L1 -376 5778 5636 21237 54 5 0 chr4 54745646 54748311 -129540351 - L1P2 LINE L1 -1638 4508 1832 3564 147 2 0 chr4 54748322 54748847 -129539815 + L1P LINE L1 12 537 -5609 1290 129 5 0 chr4 54748857 54749050 -129539612 - L1P LINE L1 -5951 195 2 9851 233 52 26 chr4 54749051 54754689 -129533973 - L1MA7 LINE L1 -1779 4953 1 4718 103 219 79 chr4 54754694 54756063 -129532599 + pTR5 LTR ERV1 743 2438 0 209 322 79 13 chr4 54757211 54757363 -129531299 - L2 LINE L2 -189 3083 2922 215 356 50 64 chr4 54757398 54757679 -129530983 - L2 LINE L2 -458 2856 2580 1993 139 10 0 chr4 54758029 54758324 -129530338 + AluSx SINE Alu 1 298 -14 677 233 141 92 chr4 54758489 54759013 -129529649 + L1ME4a LINE L1 5569 6118 -3 350 208 148 20 chr4 54759057 54759158 -129529504 - L2 LINE L2 -6 3307 3194 848 286 89 41 chr4 54759215 54759631 -129529031 - MLT1K LTR MaLR -8 580 145 210 91 0 0 chr4 54760546 54760579 -129528083 + (CA)n Simple_repeat Simple_repeat 1 33 0 439 216 98 0 chr4 54760613 54760715 -129527947 + MER117 DNA MER1_type 50 161 -36 259 319 183 34 chr4 54761667 54761902 -129526760 - L2 LINE L2 -48 3265 2996 912 259 118 48 chr4 54761929 54762343 -129526319 - L2 LINE L2 0 3313 2871 1255 186 63 25 chr4 54763134 54763419 -129525243 + MLT1C LTR MaLR 11 306 -161 801 175 78 12 chr4 54763457 54763623 -129525039 + MLT1C LTR MaLR 291 467 0 2501 153 168 8 chr4 54763764 54764281 -129524381 + L1PA16 LINE L1 5567 6166 0 373 227 23 78 chr4 54764286 54764414 -129524248 + MER21B LTR ERV1 347 467 -396 506 269 150 5 chr4 54764448 54764641 -129524021 + MIR SINE MIR 28 248 -14 272 297 141 0 chr4 54764969 54765097 -129523565 - MIR SINE MIR -6 256 111 448 281 73 39 chr4 54765233 54765411 -129523251 + MIR3 SINE MIR 23 206 -2 2223 107 0 0 chr4 54766016 54766306 -129522356 + AluSg1 SINE Alu 12 301 -8 351 288 40 8 chr4 54766341 54766466 -129522196 - MIR SINE MIR -122 140 12 23 0 0 0 chr4 54766877 54766900 -129521762 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 54767221 54767244 -129521418 + AT_rich Low_complexity Low_complexity 1 23 0 1342 174 116 47 chr4 54768392 54768667 -129519995 - AluJo SINE Alu -8 294 1 503 254 0 0 chr4 54768915 54769029 -129519633 + MIR SINE MIR 14 127 -135 313 273 124 80 chr4 54769464 54769713 -129518949 - L1M2 LINE L1 -5816 1033 774 192 286 32 16 chr4 54770156 54770219 -129518443 + MIR SINE MIR 92 155 -107 192 158 0 0 chr4 54770231 54770269 -129518393 + A-rich Low_complexity Low_complexity 1 38 0 2345 108 0 0 chr4 54770327 54770632 -129518030 - AluSx SINE Alu -7 305 1 269 256 205 21 chr4 54773124 54773358 -129515304 + L1MC/D LINE L1 4639 4915 -1231 1101 215 29 0 chr4 54773375 54773584 -129515078 - MIR SINE MIR -2 260 46 373 302 58 56 chr4 54773584 54774015 -129514647 + L1MC/D LINE L1 4947 5378 -768 6851 121 12 8 chr4 54774076 54775376 -129513286 + L1MA3 LINE L1 4999 6305 0 3418 163 22 9 chr4 54775415 54775475 -129513187 + L1M1 LINE L1 4601 4659 -1646 285 29 0 0 chr4 54775475 54775509 -129513153 + (CA)n Simple_repeat Simple_repeat 1 34 0 3418 163 22 9 chr4 54775509 54775891 -129512771 + L1M1 LINE L1 4659 5035 -1270 194 79 0 26 chr4 54775891 54775929 -129512733 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3418 163 22 9 chr4 54775929 54776647 -129512015 + L1M1 LINE L1 5035 5779 -526 1537 160 22 52 chr4 54777349 54777711 -129510951 - L1MB8 LINE L1 -1 6177 5827 2216 96 3 0 chr4 54777841 54778132 -129510530 + AluSp SINE Alu 1 292 -21 449 240 20 0 chr4 54778503 54778603 -129510059 + MER5A DNA MER1_type 13 114 -75 390 325 26 22 chr4 54778631 54778846 -129509816 - L1MB8 LINE L1 -458 5663 5484 515 355 125 17 chr4 54779246 54779590 -129509072 + L1MC/D LINE L1 5404 5784 -2024 824 264 34 29 chr4 54779891 54780130 -129508532 - MIR SINE MIR 0 262 23 641 126 9 0 chr4 54780142 54780253 -129508409 + (TCCA)n Simple_repeat Simple_repeat 1 112 0 423 83 0 0 chr4 54780298 54780358 -129508304 + (TTCC)n Simple_repeat Simple_repeat 3 62 0 266 273 39 13 chr4 54780684 54780761 -129507901 - MIR SINE MIR -114 94 16 195 42 0 0 chr4 54780983 54781007 -129507655 + (A)n Simple_repeat Simple_repeat 1 24 0 22 80 0 0 chr4 54781935 54781985 -129506677 + AT_rich Low_complexity Low_complexity 1 50 0 300 263 56 72 chr4 54781986 54782237 -129506425 - L1ME4a LINE L1 -11 6110 5864 219 277 0 0 chr4 54783367 54783432 -129505230 + (TG)n Simple_repeat Simple_repeat 2 66 0 576 183 10 0 chr4 54783766 54783870 -129504792 + MIR SINE MIR 79 183 -79 508 287 37 37 chr4 54784120 54784284 -129504378 + MIR3 SINE MIR 18 181 -27 251 347 25 25 chr4 54784480 54784601 -129504061 + L2 LINE L2 3148 3268 -4 614 268 0 0 chr4 54784731 54784854 -129503808 + MER5A DNA MER1_type 17 139 -50 1722 161 24 0 chr4 54784869 54785167 -129503495 - L1MC1 LINE L1 -1 6332 6028 2092 124 0 0 chr4 54785177 54785510 -129503152 - AluSx SINE Alu 0 333 1 267 164 182 0 chr4 54785510 54785565 -129503097 + MER5A DNA MER1_type 125 189 0 848 164 14 0 chr4 54785853 54785993 -129502669 + AluSq/x SINE Alu 1 142 -171 370 188 0 14 chr4 54785993 54786062 -129502600 + AluS SINE Alu 233 300 0 352 250 38 49 chr4 54786079 54786263 -129502399 - L1MC5 LINE L1 -49 7912 7731 3247 230 39 10 chr4 54786269 54787134 -129501528 + L1M4 LINE L1 3596 4485 -1661 2075 234 61 8 chr4 54787142 54787634 -129501028 + MLT1F LTR MaLR 14 531 -11 298 182 18 0 chr4 54787644 54787699 -129500963 + MLT1F-int LTR MaLR 1 56 -1315 22 0 0 0 chr4 54787848 54787870 -129500792 + AT_rich Low_complexity Low_complexity 1 22 0 2209 82 20 10 chr4 54788165 54788469 -129500193 - AluSg1 SINE Alu -2 307 1 462 247 27 108 chr4 54789320 54789506 -129499156 - MER5B DNA MER1_type -7 171 1 815 259 116 0 chr4 54790437 54790653 -129498009 + MIR SINE MIR 22 262 0 260 273 146 30 chr4 54791215 54791380 -129497282 + MLT1K LTR MaLR 399 582 -6 311 359 103 16 chr4 54791876 54792389 -129496273 - L2 LINE L2 -825 2489 1932 216 86 0 0 chr4 54794219 54794254 -129494408 + (T)n Simple_repeat Simple_repeat 1 35 0 507 238 63 92 chr4 54794575 54794654 -129494008 + MIR SINE MIR 43 123 -139 2918 3 3 0 chr4 54794654 54794971 -129493691 + AluYb8 SINE Alu 1 318 0 507 238 63 92 chr4 54794971 54795097 -129493565 + MIR SINE MIR 123 242 -20 794 170 7 14 chr4 54845426 54845573 -129443089 + L2 LINE L2 2407 2552 -762 426 292 42 19 chr4 54845598 54845814 -129442848 + L1M4 LINE L1 4132 4352 -1794 3111 105 143 53 chr4 54845930 54846184 -129442478 - LTR10E LTR ERV1 0 633 403 1684 97 9 0 chr4 54846184 54846411 -129442251 - AluSp SINE Alu 0 313 85 3111 105 143 53 chr4 54846411 54846737 -129441925 - LTR10E LTR ERV1 -230 403 1 3213 217 8 8 chr4 54846890 54847642 -129441020 - Harlequin LTR ERV1 -743 5906 3375 1660 191 44 0 chr4 54847696 54848011 -129440651 - Harlequin LTR ERV1 -3887 3009 2681 567 146 37 73 chr4 54848140 54848304 -129440358 + AluSp SINE Alu 143 300 -13 198 71 0 0 chr4 54848358 54848386 -129440276 + (CA)n Simple_repeat Simple_repeat 2 29 0 2187 97 0 44 chr4 54848563 54848884 -129439778 + AluY SINE Alu 2 308 -3 287 354 31 0 chr4 54849184 54849280 -129439382 + L2 LINE L2 3193 3291 -22 332 294 101 32 chr4 54849617 54849865 -129438797 - L1ME4a LINE L1 -152 5969 5705 1124 123 6 0 chr4 54851179 54851342 -129437320 + AluJo SINE Alu 1 164 -148 378 287 189 39 chr4 54851480 54851766 -129436896 + L2 LINE L2 2551 2879 -435 280 237 17 0 chr4 54851890 54851949 -129436713 + L2 LINE L2 3254 3313 0 319 264 118 18 chr4 54852037 54852147 -129436515 - L2 LINE L2 -2 3270 3150 321 219 41 0 chr4 54852149 54852222 -129436440 - Charlie4a DNA MER1_type 0 508 433 919 160 269 42 chr4 54852991 54853229 -129435433 - AluY SINE Alu -9 292 1 2112 130 3 0 chr4 54853288 54853588 -129435074 + AluSq SINE Alu 1 301 -12 2059 124 7 16 chr4 54853592 54853899 -129434763 + AluSx SINE Alu 1 304 -8 874 195 114 38 chr4 54853903 54854165 -129434497 + L1MA7 LINE L1 6010 6291 0 1339 203 84 32 chr4 54854175 54854277 -129434385 - Charlie4a DNA MER1_type -1541 420 325 2218 105 3 0 chr4 54854277 54854572 -129434090 - AluSq SINE Alu -17 296 1 1339 203 84 32 chr4 54854572 54854849 -129433813 - Charlie4a DNA MER1_type -1636 325 21 21 0 0 0 chr4 54855105 54855126 -129433536 + AT_rich Low_complexity Low_complexity 1 21 0 2075 137 0 3 chr4 54855324 54855624 -129433038 + AluSx SINE Alu 1 299 -13 363 306 63 32 chr4 54855807 54856059 -129432603 + MIR SINE MIR 3 262 0 8326 60 14 1 chr4 54856864 54858647 -129430015 + L1PA6 LINE L1 4356 6152 -2 572 170 9 9 chr4 54858793 54858899 -129429763 + MER41A LTR ERV1 361 466 -88 256 114 0 0 chr4 54859048 54859083 -129429579 + MER41B LTR ERV1 311 345 -290 355 312 7 43 chr4 54859602 54859743 -129428919 + MIR SINE MIR 71 206 -56 2609 141 23 7 chr4 54859777 54860204 -129428458 + L1MC2 LINE L1 5613 6046 -298 2399 93 0 0 chr4 54860204 54860505 -129428157 - AluSx SINE Alu -11 301 1 383 227 121 23 chr4 54860580 54860712 -129427950 + MLT1J LTR MaLR 340 484 -27 452 281 58 27 chr4 54861022 54861055 -129427607 + L1ME4a LINE L1 5690 5721 -400 7162 121 30 63 chr4 54861055 54861307 -129427355 - Tigger3b DNA MER2_type -1797 1231 972 2322 109 3 0 chr4 54861307 54861611 -129427051 + AluSq SINE Alu 1 305 -8 7162 121 30 63 chr4 54861611 54862334 -129426328 - Tigger3b DNA MER2_type -2056 972 305 2004 142 3 7 chr4 54862334 54862643 -129426019 + AluJo SINE Alu 1 308 -4 7162 121 30 63 chr4 54862643 54862939 -129425723 - Tigger3b DNA MER2_type -2723 305 1 452 281 58 27 chr4 54862939 54863129 -129425533 + L1ME4a LINE L1 5721 5920 -201 512 288 74 0 chr4 54863173 54863336 -129425326 - MIR SINE MIR -7 255 81 213 94 0 0 chr4 54863541 54863573 -129425089 + (CA)n Simple_repeat Simple_repeat 1 32 0 342 0 0 0 chr4 54863826 54863864 -129424798 + (CA)n Simple_repeat Simple_repeat 2 39 0 837 281 121 56 chr4 54865110 54865477 -129423185 + MLT1K LTR MaLR 82 487 -101 1160 225 143 52 chr4 54865477 54865940 -129422722 + MLT1D LTR MaLR 1 505 0 837 281 121 56 chr4 54865940 54866034 -129422628 + MLT1K LTR MaLR 487 573 -15 26 0 0 0 chr4 54866035 54866061 -129422601 + AT_rich Low_complexity Low_complexity 1 26 0 2207 152 33 30 chr4 54866401 54866764 -129421898 + THE1B LTR MaLR 1 364 0 2078 88 4 0 chr4 54868122 54868385 -129420277 + AluY SINE Alu 34 297 -14 432 267 32 90 chr4 54868757 54868786 -129419876 + L1MC4a LINE L1 5412 5441 -725 202 39 0 0 chr4 54868786 54868812 -129419850 + (TTG)n Simple_repeat Simple_repeat 2 180 0 1994 120 7 3 chr4 54868812 54869095 -129419567 - AluSx SINE Alu -1 309 1 432 267 32 90 chr4 54869095 54869335 -129419327 + L1MC4a LINE L1 5439 5667 -499 294 251 128 103 chr4 54869522 54869597 -129419065 + L1MC4a LINE L1 5679 5751 -2057 2398 93 3 0 chr4 54869597 54869898 -129418764 + AluSc SINE Alu 1 302 -7 294 251 128 103 chr4 54869898 54870017 -129418645 + L1MC4a LINE L1 5751 5878 -1930 4178 131 7 2 chr4 54870439 54871033 -129417629 - L1PA15 LINE L1 -8 6157 5561 1086 107 0 0 chr4 54871187 54871364 -129417298 + (G)n Simple_repeat Simple_repeat 1 177 0 474 155 0 0 chr4 54871376 54871492 -129417170 + G-rich Low_complexity Low_complexity 1 116 0 277 224 0 28 chr4 54871555 54871662 -129417000 + G-rich Low_complexity Low_complexity 3 106 0 360 310 9 17 chr4 54871711 54871827 -129416835 + MIR SINE MIR 47 161 -101 326 272 163 49 chr4 54872112 54872339 -129416323 - MIR SINE MIR -11 251 3 257 49 73 0 chr4 54872442 54872483 -129416179 + CT-rich Low_complexity Low_complexity 4 47 0 260 260 0 39 chr4 54873027 54873104 -129415558 + GA-rich Low_complexity Low_complexity 3 76 0 448 296 70 25 chr4 54873624 54873823 -129414839 - MIR SINE MIR -6 256 49 237 108 0 0 chr4 54873832 54873869 -129414793 + (CA)n Simple_repeat Simple_repeat 1 37 0 1535 134 0 0 chr4 54874085 54874308 -129414354 + AluY SINE Alu 68 290 -21 612 348 31 5 chr4 54874543 54874767 -129413895 + MIR SINE MIR 2 231 -31 219 170 0 0 chr4 54875358 54875405 -129413257 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 1306 144 55 31 chr4 54875588 54875879 -129412783 + MER33 DNA MER1_type 26 323 -1 479 269 156 25 chr4 54875895 54876055 -129412607 + MER5A DNA MER1_type 9 189 0 215 196 0 22 chr4 54876055 54876101 -129412561 - MIR3 SINE MIR -48 160 116 200 281 49 61 chr4 54876549 54876631 -129412031 + L2 LINE L2 3187 3267 -5 205 200 0 0 chr4 54877308 54877348 -129411314 + (TAA)n Simple_repeat Simple_repeat 3 42 0 1904 259 162 22 chr4 54877438 54878477 -129410185 - L2 LINE L2 0 3313 2118 1640 199 33 0 chr4 54878701 54879003 -129409659 + AluJb SINE Alu 1 312 0 585 76 0 0 chr4 54879003 54879082 -129409580 + (GGAA)n Simple_repeat Simple_repeat 3 81 0 2478 188 72 8 chr4 54879313 54879817 -129408845 - L1MB7 LINE L1 -278 5906 5358 1890 126 26 0 chr4 54879817 54880087 -129408575 - AluSx SINE Alu -22 290 14 2478 188 72 8 chr4 54880087 54880131 -129408531 - L1MB7 LINE L1 -826 5358 5318 335 268 116 26 chr4 54880561 54880751 -129407911 - HAL1 LINE L1 -887 1620 1414 900 190 0 6 chr4 54880826 54880984 -129407678 - AluJb SINE Alu -20 292 136 3580 124 14 38 chr4 54881294 54881868 -129406794 + MER61E LTR ERV1 1 560 -9 191 315 0 54 chr4 54882689 54882781 -129405881 - L2 LINE L2 -68 3245 3159 1920 135 3 55 chr4 54882781 54883092 -129405570 + AluSx SINE Alu 1 295 -17 2231 115 0 16 chr4 54883094 54883408 -129405254 + AluSx SINE Alu 1 309 -3 250 143 41 0 chr4 54883425 54883474 -129405188 + Alu SINE Alu 252 302 0 1191 282 93 59 chr4 54883475 54883504 -129405158 - L2 LINE L2 -136 3177 3150 2256 113 7 0 chr4 54883504 54883804 -129404858 + AluSx SINE Alu 1 302 -10 1191 282 93 59 chr4 54883804 54884140 -129404522 - L2 LINE L2 -163 3150 2827 2390 106 0 0 chr4 54884140 54884451 -129404211 - AluSq SINE Alu -2 311 1 1191 282 93 59 chr4 54884451 54884932 -129403730 - L2 LINE L2 -486 2827 2271 2275 107 3 0 chr4 54885194 54885494 -129403168 - AluSx SINE Alu -11 301 1 2255 121 0 3 chr4 54886027 54886334 -129402328 - AluSg SINE Alu -3 307 2 377 259 57 8 chr4 54886468 54886595 -129402067 + MIR SINE MIR 24 156 -54 2214 115 3 0 chr4 54886798 54887103 -129401559 + AluSx SINE Alu 1 306 -6 2115 105 10 7 chr4 54887107 54887403 -129401259 + AluSg SINE Alu 1 297 -13 2214 158 49 23 chr4 54888386 54888772 -129399890 + MER57A LTR ERV1 8 403 0 2261 100 3 0 chr4 54888985 54889295 -129399367 + AluSp SINE Alu 1 311 -2 197 233 23 0 chr4 54889464 54889507 -129399155 + MIR SINE MIR 198 241 -21 521 106 71 0 chr4 54892006 54892119 -129396543 + CT-rich Low_complexity Low_complexity 2 122 0 1438 137 52 33 chr4 54892127 54892398 -129396264 - AluJo SINE Alu -6 306 31 436 333 75 10 chr4 54892491 54892692 -129395970 + L3 LINE CR1 1322 1535 -42 22 35 0 0 chr4 54894102 54894131 -129394531 + AT_rich Low_complexity Low_complexity 1 29 0 521 125 0 0 chr4 54894152 54894224 -129394438 - FRAM SINE Alu -77 99 28 22 80 0 0 chr4 54894335 54894385 -129394277 + AT_rich Low_complexity Low_complexity 1 50 0 923 145 0 0 chr4 54894400 54894531 -129394131 - FLAM_C SINE Alu -2 131 1 375 90 51 51 chr4 54894618 54894795 -129393867 + (TATAA)n Simple_repeat Simple_repeat 3 179 0 270 0 0 0 chr4 54895186 54895216 -129393446 + (CA)n Simple_repeat Simple_repeat 1 30 0 208 152 0 0 chr4 54895268 54895301 -129393361 + L2 LINE L2 3232 3264 -8 1698 150 0 38 chr4 54895338 54895631 -129393031 + AluJb SINE Alu 1 282 -30 22 0 0 0 chr4 54895634 54895656 -129393006 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 54895867 54895888 -129392774 + AT_rich Low_complexity Low_complexity 1 21 0 2191 102 0 13 chr4 54896394 54896698 -129391964 - AluSg SINE Alu -10 300 1 222 37 0 0 chr4 54897095 54897122 -129391540 + (T)n Simple_repeat Simple_repeat 1 27 0 195 42 0 0 chr4 54897620 54897644 -129391018 + (TTCC)n Simple_repeat Simple_repeat 1 24 0 1547 128 132 25 chr4 54897644 54897925 -129390737 - AluSx SINE Alu -1 311 1 1923 122 0 46 chr4 54898037 54898340 -129390322 - AluJo SINE Alu -15 297 9 884 210 70 16 chr4 54898806 54898992 -129389670 + MER6B DNA MER2_type 2 197 -13 410 210 100 75 chr4 54900123 54900266 -129388396 - L1MC4a LINE L1 -1923 5885 5734 1850 143 23 10 chr4 54900266 54900566 -129388096 - AluJb SINE Alu -8 304 1 410 210 100 75 chr4 54900566 54900622 -129388040 - L1MC4a LINE L1 -2074 5734 5681 1163 172 59 41 chr4 54900905 54901195 -129387467 + MER33 DNA MER1_type 1 295 -29 765 216 132 31 chr4 54901418 54901645 -129387017 - MIR SINE MIR -7 255 6 1762 180 65 6 chr4 54901908 54902230 -129386432 - MER7A DNA MER2_type -7 339 1 190 259 188 24 chr4 54902231 54902316 -129386346 - MIR SINE MIR -90 172 74 21 0 0 0 chr4 54902532 54902553 -129386109 + AT_rich Low_complexity Low_complexity 1 21 0 454 178 0 0 chr4 54902582 54902655 -129386007 - AluJ/FRAM SINE Alu -20 292 220 952 197 67 24 chr4 54903113 54903321 -129385341 - MER20 DNA MER1_type 0 219 3 269 338 113 23 chr4 54903382 54903515 -129385147 - L3 LINE CR1 -136 1441 1297 236 270 16 0 chr4 54903661 54903724 -129384938 + CT-rich Low_complexity Low_complexity 4 67 0 195 333 0 60 chr4 54903846 54903930 -129384732 - L3 LINE CR1 -479 1098 1020 906 134 47 7 chr4 54904027 54904176 -129384486 - AluSq SINE Alu -18 295 141 295 323 67 54 chr4 54904194 54904417 -129384245 - L3 LINE CR1 -731 846 621 2322 110 0 7 chr4 54904458 54904759 -129383903 + AluSx SINE Alu 1 299 -13 992 165 160 0 chr4 54904842 54905042 -129383620 + MER46A DNA MER2_type 1 232 -4 410 174 174 0 chr4 54905592 54905701 -129382961 - Charlie2 DNA MER1_type -18 2844 2717 2094 128 10 3 chr4 54905719 54906023 -129382639 + AluSg SINE Alu 1 306 -4 1816 125 18 4 chr4 54906226 54906507 -129382155 + AluSg SINE Alu 20 304 -6 854 177 137 86 chr4 54906524 54906726 -129381936 - Charlie2 DNA MER1_type -182 2680 2490 681 111 0 10 chr4 54906726 54906825 -129381837 + HY3 scRNA scRNA 2 99 -2 854 177 137 86 chr4 54906825 54907052 -129381610 - Charlie2 DNA MER1_type -372 2490 2229 182 62 31 0 chr4 54907052 54907084 -129381578 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1688 177 0 0 chr4 54907087 54907352 -129381310 - AluJo SINE Alu -30 282 18 2019 151 3 3 chr4 54907392 54907704 -129380958 - AluSx SINE Alu 0 312 1 368 231 25 66 chr4 54907733 54907854 -129380808 - L1MC4 LINE L1 -5 8037 7922 2429 67 0 7 chr4 54908076 54908373 -129380289 + AluY SINE Alu 1 295 -16 1412 111 14 19 chr4 54908533 54908741 -129379921 - L1PA8 LINE L1 -4 6168 5962 2934 250 53 39 chr4 54908743 54909743 -129378919 - L1MC4 LINE L1 -381 7661 6648 1972 146 10 10 chr4 54909936 54910245 -129378417 - AluJb SINE Alu -3 309 1 701 176 64 8 chr4 54910297 54910422 -129378240 - FLAM_C SINE Alu -10 133 2 23 54 0 0 chr4 54910592 54910629 -129378033 + AT_rich Low_complexity Low_complexity 1 37 0 190 285 219 24 chr4 54910775 54910898 -129377764 - L3 LINE CR1 -5 1572 1426 233 307 0 0 chr4 54912385 54912460 -129376202 + L1ME LINE L1 5534 5608 -513 1058 125 12 6 chr4 54912465 54912625 -129376037 + AluJb SINE Alu 135 295 -17 2029 126 6 22 chr4 54912854 54913171 -129375491 + AluSx SINE Alu 1 312 0 522 211 45 45 chr4 54913246 54913379 -129375283 - AluJb SINE Alu -178 134 2 250 284 64 37 chr4 54913435 54913544 -129375118 - MIR3 SINE MIR -7 201 90 1133 135 0 0 chr4 54914034 54914197 -129374465 + AluSg/x SINE Alu 130 292 -18 269 26 0 26 chr4 54914213 54914252 -129374410 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 214 275 175 42 chr4 54914539 54914659 -129374003 + MIR SINE MIR 96 231 -31 1904 88 113 4 chr4 54915003 54915277 -129373385 + AluSx SINE Alu 1 304 -8 1823 144 11 0 chr4 54915378 54915662 -129373000 - AluJb SINE Alu -1 311 25 1955 139 18 0 chr4 54916359 54916640 -129372022 - AluSx SINE Alu -22 290 5 2016 110 45 3 chr4 54916732 54917023 -129371639 - AluY SINE Alu -8 303 1 1175 191 39 47 chr4 54917025 54917281 -129371381 - AluJo SINE Alu -17 295 42 248 390 31 38 chr4 54917302 54917531 -129371131 + L2 LINE L2 2463 2691 -623 1754 165 29 0 chr4 54917531 54917810 -129370852 - AluJo SINE Alu -25 287 1 248 390 31 38 chr4 54917810 54917872 -129370790 + L2 LINE L2 2691 2752 -562 213 244 282 13 chr4 54920461 54920539 -129368123 - MIR SINE MIR -157 105 7 2189 84 13 17 chr4 54921124 54921422 -129367240 - AluSg SINE Alu -13 297 1 2036 127 0 17 chr4 54921432 54921732 -129366930 - AluSx SINE Alu -17 295 1 189 0 0 0 chr4 54923057 54923078 -129365584 + (T)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr4 54924144 54924166 -129364496 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr4 54925432 54925475 -129363187 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr4 54926558 54926579 -129362083 + AT_rich Low_complexity Low_complexity 1 21 0 621 247 47 26 chr4 54930102 54930292 -129358370 + MIR SINE MIR 13 206 -56 295 290 32 48 chr4 54930368 54930492 -129358170 + MIR SINE MIR 8 129 -133 180 0 0 0 chr4 54930976 54930996 -129357666 + (T)n Simple_repeat Simple_repeat 1 20 0 425 286 172 10 chr4 54931671 54931874 -129356788 - MIR SINE MIR -24 238 3 208 200 29 29 chr4 54932427 54932497 -129356165 + (CTG)n Simple_repeat Simple_repeat 1 70 0 4332 144 55 41 chr4 54932851 54934100 -129354562 + L1MB3 LINE L1 4927 6180 -3 240 59 0 0 chr4 54935048 54935082 -129353580 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3926 88 88 2 chr4 54935269 54935883 -129352779 + L1PB3 LINE L1 5411 6077 -77 2305 102 7 0 chr4 54937275 54937580 -129351082 + AluSq SINE Alu 1 307 -6 22 0 0 0 chr4 54938431 54938453 -129350209 + AT_rich Low_complexity Low_complexity 1 22 0 467 261 25 12 chr4 54938988 54939149 -129349513 + LTR41 LTR ERVL 21 183 -590 256 175 38 62 chr4 54939474 54939554 -129349108 + LTR41 LTR ERVL 506 583 -190 495 145 71 74 chr4 54939590 54939659 -129349003 + LTR41 LTR ERVL 584 652 -143 1908 171 0 16 chr4 54939659 54939975 -129348687 - AluJo SINE Alu -1 311 1 495 145 71 74 chr4 54939975 54940107 -129348555 + LTR41 LTR ERVL 652 792 -3 1447 167 63 0 chr4 54940178 54940417 -129348245 - AluJb SINE Alu -7 305 52 22 35 0 0 chr4 54941116 54941145 -129347517 + AT_rich Low_complexity Low_complexity 1 29 0 1959 139 10 7 chr4 54941164 54941459 -129347203 + AluSx SINE Alu 1 296 -16 209 333 51 60 chr4 54942060 54942177 -129346485 + L2 LINE L2 2957 3072 -200 590 203 43 14 chr4 54942485 54942623 -129346039 - MER20B DNA MER1_type -607 176 35 396 103 0 0 chr4 54942660 54942718 -129345944 + (TG)n Simple_repeat Simple_repeat 1 58 0 334 161 48 0 chr4 54942718 54942780 -129345882 - AluY SINE Alu -109 192 128 434 134 24 102 chr4 54944512 54944559 -129344103 + L1M4 LINE L1 4944 4993 -1153 2076 125 3 3 chr4 54944559 54944855 -129343807 + AluSq SINE Alu 1 296 -17 434 134 24 102 chr4 54944855 54944934 -129343728 + L1M4 LINE L1 4993 5060 -1086 284 250 29 0 chr4 54944939 54945007 -129343655 + FRAM/FAM SINE Alu 13 82 -84 1652 240 135 32 chr4 54945034 54945633 -129343029 + L2 LINE L2 1616 2276 -1038 259 299 34 34 chr4 54945635 54945752 -129342910 - L2 LINE L2 -728 2586 2470 447 266 44 0 chr4 54945908 54946021 -129342641 + L2 LINE L2 3196 3313 0 1780 234 103 27 chr4 54946125 54946676 -129341986 + MLT1E LTR MaLR 1 593 0 281 324 78 49 chr4 54946709 54946913 -129341749 + MIR SINE MIR 47 256 -6 22 0 0 0 chr4 54946967 54946989 -129341673 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr4 54947090 54947119 -129341543 + AT_rich Low_complexity Low_complexity 1 29 0 2266 121 3 0 chr4 54948407 54948713 -129339949 + AluSx SINE Alu 1 307 -5 204 338 54 0 chr4 54948951 54949025 -129339637 - MIR SINE MIR -60 148 71 769 256 50 6 chr4 54949335 54949515 -129339147 + MIR SINE MIR 46 233 -29 26 0 0 0 chr4 54950379 54950405 -129338257 + AT_rich Low_complexity Low_complexity 1 26 0 1629 114 5 0 chr4 54950455 54950675 -129337987 + AluSq SINE Alu 1 221 -92 1760 156 7 11 chr4 54950760 54951042 -129337620 - AluJo SINE Alu -19 293 13 203 301 167 46 chr4 54951192 54951564 -129337098 + L2 LINE L2 2250 2666 -648 1485 163 53 0 chr4 54951843 54952088 -129336574 + AluJb SINE Alu 1 258 -54 1676 178 32 26 chr4 54952107 54952416 -129336246 - AluJb SINE Alu -1 311 1 240 314 47 0 chr4 54953064 54953149 -129335513 + Charlie8 DNA MER1_type 5 93 -2324 1449 196 17 3 chr4 54953149 54953445 -129335217 + MLT2C1 LTR ERVL 1 300 -97 324 62 3 0 chr4 54953448 54953495 -129335167 + MLT2C1 LTR ERVL 357 397 0 952 269 140 24 chr4 54953500 54953958 -129334704 + MLT1J LTR MaLR 1 511 0 495 277 7 19 chr4 54953958 54954112 -129334550 + Charlie8 DNA MER1_type 82 233 -2184 526 240 67 6 chr4 54954393 54954572 -129334090 - AluSg1 SINE Alu -116 193 4 2343 90 0 3 chr4 54955674 54955975 -129332687 + AluSq SINE Alu 1 300 -13 33 80 0 0 chr4 54956028 54956103 -129332559 + AT_rich Low_complexity Low_complexity 1 75 0 192 77 0 0 chr4 54956701 54956727 -129331935 + (A)n Simple_repeat Simple_repeat 1 26 0 2527 48 3 0 chr4 54957124 54957418 -129331244 + AluY SINE Alu 1 295 -16 2015 144 10 0 chr4 54957467 54957766 -129330896 + AluSx SINE Alu 1 302 -10 410 274 43 8 chr4 54958384 54958501 -129330161 + MIR3 SINE MIR 87 207 -1 2059 114 10 7 chr4 54958645 54958935 -129329727 + AluSx SINE Alu 1 291 -21 942 105 8 8 chr4 54959035 54959168 -129329494 - AluSq/x SINE Alu -179 133 1 2166 117 3 0 chr4 54959170 54959480 -129329182 - AluSx SINE Alu 0 311 1 928 254 66 13 chr4 54959498 54959726 -129328936 - MIR SINE MIR -10 252 13 1783 190 0 3 chr4 54959888 54960188 -129328474 + AluJb SINE Alu 1 299 -13 378 0 0 0 chr4 54960872 54960914 -129327748 + (CA)n Simple_repeat Simple_repeat 1 42 0 209 152 0 0 chr4 54960966 54960999 -129327663 + L2 LINE L2 3232 3264 -8 1794 145 0 34 chr4 54961036 54961332 -129327330 + AluJb SINE Alu 1 286 -26 21 0 0 0 chr4 54961332 54961353 -129327309 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 54961564 54961585 -129327077 + AT_rich Low_complexity Low_complexity 1 21 0 2270 106 0 7 chr4 54962091 54962393 -129326269 - AluSx SINE Alu -10 302 3 183 114 0 0 chr4 54964258 54964293 -129324369 + (A)n Simple_repeat Simple_repeat 1 35 0 1700 241 181 23 chr4 54964472 54964852 -129323810 + L2 LINE L2 859 1178 -2136 1977 110 10 13 chr4 54964852 54965152 -129323510 - AluSx SINE Alu -13 299 1 1700 241 181 23 chr4 54965152 54965340 -129323322 + L2 LINE L2 1178 1517 -1797 727 128 56 24 chr4 54965352 54965477 -129323185 - FLAM_C SINE Alu -4 129 1 1322 190 30 27 chr4 54965485 54965816 -129322846 - LTR37A LTR ERV1 -18 408 77 3556 266 98 40 chr4 54965890 54966064 -129322598 + L2 LINE L2 1494 1656 -1657 1975 139 3 3 chr4 54966064 54966351 -129322311 - AluJb SINE Alu -25 287 1 2336 97 3 0 chr4 54966359 54966658 -129322004 - AluSp SINE Alu -13 300 1 3556 266 98 40 chr4 54966658 54966672 -129321990 + L2 LINE L2 1662 1674 -1639 2099 131 7 7 chr4 54966672 54966978 -129321684 - AluSx SINE Alu -6 306 1 3556 266 98 40 chr4 54966978 54968230 -129320432 + L2 LINE L2 1674 3043 -270 1308 263 61 56 chr4 54968230 54968502 -129320160 - MLT1E LTR MaLR 0 593 324 2201 138 0 0 chr4 54968502 54968813 -129319849 + AluJb SINE Alu 1 311 -1 1308 263 61 56 chr4 54968813 54969130 -129319532 - MLT1E LTR MaLR -269 324 1 3556 266 98 40 chr4 54969130 54969239 -129319423 + L2 LINE L2 3043 3144 -169 278 203 43 14 chr4 54969257 54969326 -129319336 + MLT1G1 LTR MaLR 514 584 -11 3285 90 14 5 chr4 54969351 54969809 -129318853 - LTR3b LTR ERVK 0 500 1 495 197 79 79 chr4 54969821 54969973 -129318689 + L2 LINE L2 3160 3311 -2 1164 138 0 0 chr4 54970230 54970397 -129318265 - AluJb SINE Alu -9 303 137 2105 112 14 3 chr4 54970656 54970952 -129317710 - AluSq SINE Alu -14 299 1 23 0 0 0 chr4 54971560 54971583 -129317079 + AT_rich Low_complexity Low_complexity 1 23 0 306 311 40 54 chr4 54971677 54971825 -129316837 - L2 LINE L2 0 3272 3127 5502 180 109 53 chr4 54971962 54973411 -129315251 + MER45R DNA AcHobo 48 1577 -4 2361 104 0 0 chr4 54973598 54973907 -129314755 + AluSg SINE Alu 1 309 -1 1762 159 3 14 chr4 54974046 54974336 -129314326 + AluJb SINE Alu 1 287 -25 731 248 87 50 chr4 54974930 54975172 -129313490 + MIR SINE MIR 12 262 0 1700 164 36 4 chr4 54975262 54975542 -129313120 - AluJo SINE Alu -23 289 1 1725 174 31 0 chr4 54976846 54977134 -129311528 - AluJo SINE Alu -15 297 1 182 350 196 10 chr4 54977559 54977753 -129310909 + L2 LINE L2 2288 2517 -797 1724 161 10 23 chr4 54978131 54978430 -129310232 - AluJb SINE Alu -17 295 1 309 337 64 13 chr4 54978652 54978896 -129309766 + ERVL LTR ERVL 1502 1794 -3899 1857 145 28 7 chr4 54979490 54979773 -129308889 - AluSx SINE Alu -14 298 10 185 320 133 13 chr4 54979801 54979951 -129308711 + L2 LINE L2 2152 2319 -995 25 31 0 0 chr4 54980456 54980488 -129308174 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr4 54980581 54980610 -129308052 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 54980740 54980762 -129307900 + AT_rich Low_complexity Low_complexity 1 22 0 362 91 18 0 chr4 54982008 54982063 -129306599 + MADE1 DNA Mariner 25 80 0 24 32 0 0 chr4 54982245 54982276 -129306386 + AT_rich Low_complexity Low_complexity 1 31 0 1527 149 63 43 chr4 54982303 54982605 -129306057 - MER2 DNA MER2_type -36 309 2 553 262 6 6 chr4 54982877 54983060 -129305602 + AluSx SINE Alu 1 183 -129 2596 88 16 11 chr4 54983363 54983736 -129304926 + THE1C LTR MaLR 1 375 0 581 174 0 9 chr4 54984303 54984418 -129304244 + L1MC3 LINE L1 7670 7783 -2 246 237 215 11 chr4 54984589 54984682 -129303980 - L2 LINE L2 -1 3271 3160 710 191 0 29 chr4 54985421 54985557 -129303105 - AluJo SINE Alu -178 134 3 237 227 23 0 chr4 54985682 54985726 -129302936 + L2 LINE L2 3209 3253 -19 6285 137 60 33 chr4 54986110 54986429 -129302233 + Tigger3b DNA MER2_type 7 316 -2712 1687 114 117 8 chr4 54986429 54986693 -129301969 - AluSx SINE Alu -17 295 3 6285 137 60 33 chr4 54986693 54987020 -129301642 + Tigger3b DNA MER2_type 316 633 -2395 1532 175 4 4 chr4 54987020 54987272 -129301390 - AluJb SINE Alu -25 287 36 6285 137 60 33 chr4 54987272 54987816 -129300846 + Tigger3b DNA MER2_type 633 1230 -1 1802 160 11 3 chr4 54989092 54989374 -129299288 + AluJb SINE Alu 3 286 -26 227 407 53 0 chr4 54989814 54989927 -129298735 + L2 LINE L2 3108 3226 -46 1895 137 14 3 chr4 54990256 54990540 -129298122 + AluSx SINE Alu 14 300 -12 182 292 0 69 chr4 54990546 54990618 -129298044 + MIR SINE MIR 114 180 -82 249 259 0 0 chr4 54990625 54990683 -129297979 + MIR SINE MIR 149 206 -56 13832 115 74 20 chr4 54990898 54993191 -129295471 + Tigger1 DNA MER2_type 1 2418 0 183 128 0 26 chr4 54994696 54994735 -129293927 - L2 LINE L2 -1 3312 3275 264 332 182 38 chr4 54994813 54995439 -129293223 - L2 LINE L2 -739 2575 1860 246 341 275 28 chr4 54995813 54996097 -129292565 + L2 LINE L2 2919 3272 0 219 226 32 0 chr4 54996985 54997047 -129291615 + (TTTA)n Simple_repeat Simple_repeat 4 67 0 21 0 0 0 chr4 54997451 54997472 -129291190 + AT_rich Low_complexity Low_complexity 1 21 0 246 282 145 26 chr4 54997588 54997680 -129290982 - L2 LINE L2 -4 3309 3199 1880 181 0 3 chr4 54997680 54997990 -129290672 - AluJo SINE Alu -3 309 1 246 282 145 26 chr4 54997990 54998014 -129290648 - L2 LINE L2 -114 3199 3179 2311 75 3 3 chr4 54998033 54998326 -129290336 + AluY SINE Alu 1 293 -18 418 167 36 24 chr4 54999024 54999108 -129289554 + MIR SINE MIR 57 141 -121 430 163 10 51 chr4 54999194 54999292 -129289370 - HsTC2 DNA Tc2 -4 1894 1801 823 157 36 18 chr4 54999332 54999498 -129289164 - L1PA16 LINE L1 -3 6163 5995 25 31 0 0 chr4 54999930 54999962 -129288700 + AT_rich Low_complexity Low_complexity 1 32 0 331 280 75 0 chr4 55000389 55000482 -129288180 - L2 LINE L2 0 3313 3214 261 252 304 15 chr4 55000679 55000814 -129287848 + MER5A DNA MER1_type 13 186 -3 607 167 0 61 chr4 55001147 55001261 -129287401 + MER46A DNA MER2_type 2 108 -128 1035 164 0 0 chr4 55001428 55001593 -129287069 - FRAM SINE Alu 0 166 2 226 294 0 29 chr4 55001718 55001786 -129286876 - L3 LINE CR1 -1 1576 1511 2071 115 0 3 chr4 55002213 55002501 -129286161 - AluSx SINE Alu -23 289 3 1099 103 11 0 chr4 55002962 55003136 -129285526 + L1MA2 LINE L1 6129 6304 0 4611 260 156 19 chr4 55003290 55005237 -129283425 - HAL1 LINE L1 -287 2220 9 1009 295 192 16 chr4 55005241 55005736 -129282926 + L2 LINE L2 1821 2402 -912 707 309 66 64 chr4 55005720 55005991 -129282671 + L2 LINE L2 2817 3091 -222 * 1713 174 11 7 chr4 55005991 55006273 -129282389 - AluJo SINE Alu -29 283 1 707 309 66 64 chr4 55006273 55006470 -129282192 + L2 LINE L2 3091 3286 -27 30 0 0 0 chr4 55006767 55006797 -129281865 + AT_rich Low_complexity Low_complexity 1 30 0 3793 213 84 54 chr4 55006906 55007745 -129280917 + L1M4c LINE L1 1974 2786 -3596 1415 181 97 25 chr4 55007745 55008066 -129280596 + MER2 DNA MER2_type 1 344 0 3793 213 84 54 chr4 55008066 55008886 -129279776 + L1M4c LINE L1 2786 3698 -2684 648 194 97 0 chr4 55008886 55009030 -129279632 + L1ME3 LINE L1 5697 5854 -308 2001 186 41 45 chr4 55009079 55009638 -129279024 + L1M4c LINE L1 3662 4218 -2164 340 264 139 69 chr4 55009689 55009801 -129278861 + L1ME4a LINE L1 5599 5725 -396 2216 130 0 0 chr4 55009801 55010108 -129278554 + AluSx SINE Alu 1 307 -5 340 264 139 69 chr4 55010108 55010139 -129278523 + L1ME4a LINE L1 5725 5752 -369 435 198 116 8 chr4 55010181 55010302 -129278360 + L1ME4a LINE L1 5983 6116 -5 30 0 0 0 chr4 55010472 55010502 -129278160 + AT_rich Low_complexity Low_complexity 1 30 0 2153 206 9 53 chr4 55011507 55011754 -129276908 + MLT1D LTR MaLR 1 214 -291 1305 62 36 31 chr4 55011754 55011947 -129276715 + L1PB1 LINE L1 5951 6144 -7 2153 206 9 53 chr4 55011947 55012227 -129276435 + MLT1D LTR MaLR 214 505 0 1923 267 80 47 chr4 55012246 55013062 -129275600 + L2 LINE L2 30 872 -2442 2380 90 0 6 chr4 55013138 55013450 -129275212 + AluSx SINE Alu 2 311 -1 1712 191 104 47 chr4 55014240 55014710 -129273952 - MLT1D LTR MaLR -7 498 2 207 0 0 0 chr4 55015834 55015857 -129272805 + (TTA)n Simple_repeat Simple_repeat 2 24 0 958 245 71 20 chr4 55016148 55016540 -129272122 - L1ME LINE L1 -5097 1433 1022 701 130 65 0 chr4 55016540 55016648 -129272014 - MER1B DNA MER1_type 0 339 225 1508 133 0 30 chr4 55016657 55016890 -129271772 - MER1B DNA MER1_type -74 265 40 420 356 67 41 chr4 55016966 55017236 -129271426 - L1ME LINE L1 -5563 967 691 308 341 48 52 chr4 55017305 55017557 -129271105 - L1ME LINE L1 -6214 326 76 1685 161 7 27 chr4 55017588 55017880 -129270782 - AluJo SINE Alu -26 286 1 1941 149 0 7 chr4 55018095 55018384 -129270278 - AluJo SINE Alu -25 287 1 418 267 20 27 chr4 55018391 55018537 -129270125 - L1MC5 LINE L1 -817 7144 7000 987 175 0 12 chr4 55018647 55018813 -129269849 - FRAM SINE Alu -13 163 1 730 105 0 9 chr4 55018834 55018939 -129269723 - HY1 scRNA scRNA -8 104 1 831 196 20 55 chr4 55018971 55019226 -129269436 - L1MC5 LINE L1 -51 7910 7665 1781 254 81 18 chr4 55019230 55020831 -129267831 + L1ME3 LINE L1 4423 6159 -3 23 0 0 0 chr4 55020873 55020896 -129267766 + AT_rich Low_complexity Low_complexity 1 23 0 216 0 0 0 chr4 55021209 55021233 -129267429 + (A)n Simple_repeat Simple_repeat 1 24 0 2416 69 7 7 chr4 55021233 55021538 -129267124 + AluY SINE Alu 1 305 -6 277 211 66 26 chr4 55021616 55021692 -129266970 + MIR SINE MIR 166 244 -18 1553 115 152 0 chr4 55022134 55022377 -129266285 + AluSg SINE Alu 1 280 -30 1964 161 0 0 chr4 55022612 55022917 -129265745 + AluJb SINE Alu 1 305 -7 971 235 46 72 chr4 55022972 55023428 -129265234 - L1MC4 LINE L1 0 8042 7599 784 189 0 0 chr4 55023445 55023577 -129265085 - FLAM_A SINE Alu -1 132 1 2055 83 48 10 chr4 55023799 55024089 -129264573 - AluSx SINE Alu -9 303 3 1790 166 24 3 chr4 55024262 55024551 -129264111 + AluJb SINE Alu 1 295 -17 1976 145 14 0 chr4 55024561 55024857 -129263805 + AluSx SINE Alu 1 300 -12 345 309 8 49 chr4 55025018 55025141 -129263521 - L2 LINE L2 -5 3267 3150 205 282 54 82 chr4 55025174 55025308 -129263354 - MIR SINE MIR -61 147 32 2237 67 0 0 chr4 55025825 55026093 -129262569 - AluY SINE Alu -14 297 30 1343 141 79 133 chr4 55026109 55026477 -129262185 - MER7A DNA MER2_type 0 346 1 944 209 54 12 chr4 55026477 55026720 -129261942 - MER58 DNA MER1_type -105 110 3 2336 98 0 10 chr4 55027578 55027884 -129260778 + AluSx SINE Alu 4 306 -6 190 255 43 0 chr4 55028125 55028172 -129260490 - MIR SINE MIR -95 113 65 494 219 35 9 chr4 55028397 55028511 -129260151 - MIR SINE MIR -2 260 144 5191 225 61 23 chr4 55028715 55030120 -129258542 - L1MC1 LINE L1 -29 6304 4780 2911 156 63 34 chr4 55030120 55030705 -129257957 + MER7C DNA MER2_type 1 602 0 5191 225 61 23 chr4 55030705 55031505 -129257157 - L1MC1 LINE L1 -1553 4780 4012 695 169 0 0 chr4 55031636 55031760 -129256902 - L1MB7 LINE L1 -21 6163 6040 3869 203 58 29 chr4 55031772 55032633 -129256029 - L1MC1 LINE L1 -2120 4026 3125 2237 82 0 30 chr4 55032633 55032936 -129255726 - AluY SINE Alu -17 294 1 3869 203 58 29 chr4 55032936 55033160 -129255502 - L1MC1 LINE L1 -3021 3125 2909 419 265 77 46 chr4 55083527 55083723 -129204939 + LTR16C LTR ERVL 250 451 -40 419 250 62 0 chr4 55083735 55083847 -129204815 - MIR SINE MIR -136 126 8 273 291 118 55 chr4 55084034 55084161 -129204501 + MIR SINE MIR 16 150 -112 24 0 0 0 chr4 55084249 55084273 -129204389 + AT_rich Low_complexity Low_complexity 1 24 0 200 250 16 47 chr4 55084667 55084731 -129203931 + L3 LINE CR1 766 827 -750 286 307 145 64 chr4 55085148 55085560 -129203102 + L3 LINE CR1 863 1388 -189 563 323 64 78 chr4 55085630 55086041 -129202621 + L2 LINE L2 2715 3113 -159 1588 119 8 4 chr4 55086041 55086292 -129202370 - L1MB3 LINE L1 -2 6181 5930 563 323 64 78 chr4 55086292 55086416 -129202246 + L2 LINE L2 3113 3237 -35 226 287 26 52 chr4 55086458 55086573 -129202089 + L3 LINE CR1 1424 1535 -42 294 248 143 19 chr4 55086575 55086680 -129201982 - L2 LINE L2 -6 3307 3190 2193 123 7 3 chr4 55087330 55087639 -129201023 - AluSg SINE Alu 0 310 1 180 152 0 0 chr4 55088517 55088550 -129200112 + A-rich Low_complexity Low_complexity 1 33 0 2475 62 0 20 chr4 55088563 55088739 -129199923 - AluY SINE Alu -11 300 131 387 0 0 0 chr4 55088739 55088782 -129199880 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2475 62 0 20 chr4 55088782 55088911 -129199751 - AluY SINE Alu -180 131 1 828 185 19 85 chr4 55089013 55089224 -129199438 - MER21B-int LTR ERV1 -3993 198 2 2376 235 25 80 chr4 55089260 55090048 -129198614 - MER21B LTR ERV1 -21 842 98 388 152 0 116 chr4 55090179 55090278 -129198384 - MER21B LTR ERV1 -774 89 1 239 269 103 0 chr4 55090278 55090356 -129198306 - MIR SINE MIR -88 174 89 1409 187 33 30 chr4 55090476 55090638 -129198024 - AluJb SINE Alu -12 300 135 1805 182 3 3 chr4 55090638 55090946 -129197716 - AluJb SINE Alu -4 308 1 1409 187 33 30 chr4 55090946 55091082 -129197580 - AluJb SINE Alu -177 135 1 973 220 108 6 chr4 55091091 55091432 -129197230 - L1MCc LINE L1 -3180 3761 3386 259 164 0 18 chr4 55091402 55091457 -129197205 - L1MCc LINE L1 -5079 1344 1291 * 2213 164 61 20 chr4 55091554 55091963 -129196699 - MSTB LTR MaLR 0 426 1 683 74 0 32 chr4 55092448 55092543 -129196119 + AluSg/x SINE Alu 207 298 -11 23 33 0 0 chr4 55092604 55092634 -129196028 + AT_rich Low_complexity Low_complexity 1 30 0 714 177 0 0 chr4 55092734 55092847 -129195815 - AluJb SINE Alu -188 124 12 376 171 68 103 chr4 55092960 55093077 -129195585 - L1ME1 LINE L1 0 6164 6052 1106 175 14 24 chr4 55093142 55093353 -129195309 + AluJo SINE Alu 93 301 -11 594 263 45 6 chr4 55093353 55093532 -129195130 - L1M4 LINE L1 -1512 4634 4449 527 279 140 6 chr4 55093555 55093734 -129194928 - L2 LINE L2 -5 3308 3106 801 211 10 0 chr4 55093848 55094042 -129194620 - L1M4 LINE L1 -2374 3772 3577 2272 122 0 0 chr4 55094358 55094662 -129194000 - AluSx SINE Alu -8 304 1 2348 188 22 17 chr4 55094853 55095396 -129193266 - L1 LINE L1 -1194 4952 4407 1383 160 103 19 chr4 55095425 55095687 -129192975 - AluJo SINE Alu -18 294 11 3270 179 28 51 chr4 55095712 55096550 -129192112 - L1 LINE L1 -1753 4393 3578 2432 98 0 0 chr4 55096550 55096857 -129191805 - AluSc SINE Alu -2 307 1 3270 179 28 51 chr4 55096857 55096951 -129191711 - L1 LINE L1 -2568 3578 3483 294 233 2 0 chr4 55096937 55097016 -129191646 - HAL1b LINE L1 -194 2313 846 * 1111 290 83 36 chr4 55097301 55097490 -129191172 - HAL1 LINE L1 -590 1917 1738 2011 151 0 0 chr4 55097490 55097789 -129190873 - AluSx SINE Alu -13 299 1 1111 290 83 36 chr4 55097789 55098371 -129190291 - HAL1 LINE L1 -769 1738 1110 686 248 99 37 chr4 55098436 55098678 -129189984 + MIR SINE MIR 1 257 -5 510 242 70 75 chr4 55098925 55099256 -129189406 + L1M4 LINE L1 3084 3412 -2734 350 232 113 56 chr4 55099258 55099400 -129189262 + L1MEc LINE L1 815 964 -5432 700 277 127 85 chr4 55099423 55099973 -129188689 + L1M2 LINE L1 1164 1690 -4737 1900 149 7 10 chr4 55099973 55100297 -129188365 + AluSx SINE Alu 1 323 0 700 277 127 85 chr4 55100297 55100318 -129188344 + L1M2 LINE L1 1690 1709 -4718 2004 154 10 0 chr4 55100318 55100624 -129188038 + AluJo SINE Alu 2 310 -2 700 277 127 85 chr4 55100624 55100714 -129187948 + L1M2 LINE L1 1709 2160 -4267 275 241 93 6 chr4 55100716 55100878 -129187784 + L1ME LINE L1 5705 5880 -241 2400 90 0 0 chr4 55101031 55101331 -129187331 - AluSx SINE Alu -12 300 1 282 56 0 0 chr4 55101399 55101435 -129187227 + (GGGGA)n Simple_repeat Simple_repeat 4 39 0 437 137 0 0 chr4 55101618 55101691 -129186971 - 7SK RNA RNA 0 193 121 632 165 0 0 chr4 55101730 55101857 -129186805 - 7SK RNA RNA -65 128 2 2104 101 0 11 chr4 55103082 55103405 -129185257 + AluSx SINE Alu 1 320 0 189 0 0 0 chr4 55103405 55103426 -129185236 + (TTA)n Simple_repeat Simple_repeat 1 21 0 971 185 5 27 chr4 55104022 55104206 -129184456 - AluJo SINE Alu -97 215 36 275 29 0 0 chr4 55104526 55104560 -129184102 + 7SK RNA RNA 134 167 -26 1059 73 0 7 chr4 55104680 55104816 -129183846 + AluSc SINE Alu 160 294 -15 306 0 0 0 chr4 55105189 55105223 -129183439 + (CA)n Simple_repeat Simple_repeat 2 35 0 315 256 0 11 chr4 55105938 55106028 -129182634 - L1MC4a LINE L1 -1915 5893 5805 1080 52 0 0 chr4 55106091 55106227 -129182435 - L1PA5 LINE L1 -3 6151 6016 23 0 0 0 chr4 55106552 55106575 -129182087 + AT_rich Low_complexity Low_complexity 1 23 0 332 299 131 83 chr4 55106910 55107679 -129180983 + L1M2 LINE L1 526 1329 -5520 202 216 0 0 chr4 55107681 55107718 -129180944 + CT-rich Low_complexity Low_complexity 1 37 0 299 290 151 0 chr4 55109108 55109201 -129179461 + MLT1K LTR MaLR 16 122 -466 364 228 180 52 chr4 55109278 55109528 -129179134 + MLT1K LTR MaLR 301 582 -6 2228 189 89 10 chr4 55109635 55110488 -129178174 - L1MCa LINE L1 -3540 2886 1969 819 239 151 51 chr4 55110505 55110619 -129178043 - L1M4 LINE L1 -2255 3891 3790 2263 77 0 3 chr4 55110619 55110905 -129177757 + AluY SINE Alu 1 285 -26 819 239 151 51 chr4 55110905 55111180 -129177482 - L1M4 LINE L1 -2356 3790 3463 441 248 0 19 chr4 55111211 55111316 -129177346 + L1MC/D LINE L1 5521 5623 -2185 560 270 46 0 chr4 55111317 55111513 -129177149 - MER112 DNA MER1_type -55 205 1 1981 156 48 11 chr4 55111891 55112243 -129176419 + MLT1A1 LTR MaLR 1 365 0 1723 193 7 16 chr4 55112439 55112745 -129175917 - AluJo SINE Alu -6 306 4 1970 136 33 0 chr4 55112896 55113198 -129175464 + AluSx SINE Alu 1 312 0 29 47 0 0 chr4 55113942 55113985 -129174677 + AT_rich Low_complexity Low_complexity 1 43 0 2062 131 10 3 chr4 55114604 55114909 -129173753 - AluSq SINE Alu -6 307 1 192 260 20 20 chr4 55115076 55115126 -129173536 + MIR SINE MIR 91 140 -68 761 265 156 86 chr4 55115225 55115945 -129172717 + L1M4 LINE L1 4630 5399 -747 234 188 0 0 chr4 55116025 55116073 -129172589 - L1MC4 LINE L1 -60 7982 7935 250 269 15 0 chr4 55116131 55116198 -129172464 + (CATATA)n Simple_repeat Simple_repeat 6 73 0 275 304 17 0 chr4 55116240 55116355 -129172307 + L1MC4 LINE L1 6896 7012 -1030 2172 92 10 16 chr4 55116403 55116708 -129171954 + AluY SINE Alu 1 303 -8 2933 175 91 148 chr4 55116773 55117496 -129171166 - Looper DNA T2_type 0 1558 795 1968 122 16 44 chr4 55117496 55117816 -129170846 + AluSx SINE Alu 1 311 -1 2933 175 91 148 chr4 55117816 55118579 -129170083 - Looper DNA T2_type -763 795 -10 1444 222 20 26 chr4 55118579 55118885 -129169777 + AluJo SINE Alu 1 304 -8 2933 175 91 148 chr4 55118885 55118898 -129169764 - Looper DNA T2_type -1568 4294967286 158 1653 108 127 15 chr4 55118898 55119158 -129169504 - AluSg1 SINE Alu -20 289 1 2933 175 91 148 chr4 55119158 55119309 -129169353 - Looper DNA T2_type -1399 159 1 1279 139 88 0 chr4 55119332 55119548 -129169114 + MER46A DNA MER2_type 2 236 0 2420 68 3 0 chr4 55120055 55120351 -129168311 + AluY SINE Alu 1 297 -14 460 255 43 11 chr4 55120564 55120748 -129167914 + L1MC5 LINE L1 7712 7901 -60 278 257 109 22 chr4 55120944 55121127 -129167535 + L1MC5 LINE L1 7482 7680 -281 1584 181 45 7 chr4 55121149 55121437 -129167225 + AluJo SINE Alu 1 299 -13 22 25 0 25 chr4 55121444 55121464 -129167198 + AT_rich Low_complexity Low_complexity 1 20 -19 2002 120 42 0 chr4 55121464 55121748 -129166914 + AluSq SINE Alu 1 296 -17 22 25 0 25 chr4 55121748 55121767 -129166895 + AT_rich Low_complexity Low_complexity 20 39 0 1179 222 6 28 chr4 55122679 55123039 -129165623 - L1 LINE L1 -2613 3533 3182 * 1191 214 67 22 chr4 55123021 55123381 -129165281 - L1 LINE L1 -1017 5129 4754 3220 189 4 7 chr4 55123396 55124099 -129164563 - L1 LINE L1 -1559 4587 3887 847 186 35 17 chr4 55124098 55124329 -129164333 - L1 LINE L1 -2934 3212 2978 * 2048 122 7 3 chr4 55124516 55124803 -129163859 - AluSx SINE Alu -24 288 1 656 291 94 25 chr4 55125017 55125261 -129163401 + MIR SINE MIR 2 262 0 225 330 97 25 chr4 55125552 55125687 -129162975 + MIR SINE MIR 10 155 -53 481 295 79 83 chr4 55125824 55126517 -129162145 + L2 LINE L2 2590 3269 -44 768 229 193 16 chr4 55126517 55126656 -129162006 + AluJo SINE Alu 2 115 -187 1675 154 40 11 chr4 55126656 55126928 -129161734 + AluSx SINE Alu 1 280 -32 768 229 193 16 chr4 55126928 55127037 -129161625 + AluJo SINE Alu 115 294 -8 481 295 79 83 chr4 55127037 55127081 -129161581 + L2 LINE L2 3269 3312 -1 5858 85 32 4 chr4 55127176 55127979 -129160683 - LTR12 LTR ERV1 0 826 1 1428 149 112 25 chr4 55128958 55129454 -129159208 - MER51A LTR ERV1 -9 625 1 570 210 238 7 chr4 55129640 55129783 -129158879 - MER5A DNA MER1_type -1 188 13 2213 99 0 3 chr4 55131619 55131927 -129156735 - AluSp SINE Alu 0 307 1 21 57 0 0 chr4 55132007 55132042 -129156620 + AT_rich Low_complexity Low_complexity 1 35 0 2267 96 0 13 chr4 55132407 55132709 -129155953 - AluSx SINE Alu -14 298 1 1977 170 58 11 chr4 55132814 55133191 -129155471 - MSTD LTR MaLR -1 395 1 1025 152 108 0 chr4 55133191 55133395 -129155267 - MSTD-int LTR MaLR 0 1735 1510 2130 90 3 65 chr4 55133395 55133716 -129154946 + AluSx SINE Alu 1 301 -11 359 282 87 22 chr4 55133726 55133786 -129154876 + L1MC4a LINE L1 4902 4957 -1189 2498 99 27 24 chr4 55133786 55134160 -129154502 + THE1C LTR MaLR 1 375 0 359 282 87 22 chr4 55134160 55134411 -129154251 + L1MC4a LINE L1 4957 5233 -913 578 266 121 28 chr4 55134639 55135153 -129153509 + L1MC4a LINE L1 5366 5816 -346 2864 135 92 6 chr4 55135245 55135780 -129152882 + L1MB3 LINE L1 5595 6175 -8 1798 169 0 24 chr4 55135965 55136261 -129152401 + AluJb SINE Alu 1 289 -23 1719 156 47 31 chr4 55136310 55136669 -129151993 + MLT1A1 LTR MaLR 1 365 0 1931 129 0 7 chr4 55136918 55137234 -129151428 + AluSx SINE Alu 1 314 0 980 112 0 0 chr4 55139456 55139581 -129149081 + AluSq/x SINE Alu 1 125 -187 3766 106 19 19 chr4 55139592 55140185 -129148477 - LTR49 LTR ERV1 -2 593 1 3524 141 65 41 chr4 55140881 55141353 -129147309 + LTR8A LTR ERV1 1 497 -230 2848 81 8 0 chr4 55141353 55141725 -129146937 - THE1C LTR MaLR 0 375 1 3524 141 65 41 chr4 55141725 55141962 -129146700 + LTR8A LTR ERV1 497 727 0 2292 104 7 10 chr4 55142031 55142339 -129146323 - AluSx SINE Alu -5 307 1 2148 105 16 19 chr4 55142473 55142786 -129145876 - AluSx SINE Alu 0 312 1 838 167 49 15 chr4 55143223 55143308 -129145354 + LTR56 LTR ERV1 1 82 -363 1659 198 7 16 chr4 55143308 55143611 -129145051 + AluJo SINE Alu 1 300 -12 838 167 49 15 chr4 55143611 55143729 -129144933 + LTR56 LTR ERV1 82 211 -234 27 0 0 0 chr4 55143917 55143944 -129144718 + GC_rich Low_complexity Low_complexity 1 27 0 356 308 27 23 chr4 55144563 55144784 -129143878 + L1MC4 LINE L1 7595 7816 -226 418 239 207 50 chr4 55144784 55145026 -129143636 + MER34 LTR ERV1 1 265 -300 975 182 37 54 chr4 55145094 55145390 -129143272 + MER34B LTR ERV1 270 560 -5 364 332 52 31 chr4 55145390 55145619 -129143043 + L1MC4 LINE L1 7809 8042 0 450 262 33 8 chr4 55146355 55146477 -129142185 - MIR SINE MIR 0 262 138 1008 272 16 12 chr4 55146579 55146829 -129141833 + MIR SINE MIR 3 253 -9 2372 181 89 27 chr4 55147035 55147560 -129141102 + MER74A LTR ERVL 1 558 0 2450 61 0 0 chr4 55147565 55147860 -129140802 + AluY SINE Alu 1 295 -16 209 195 24 0 chr4 55148204 55148245 -129140417 + CT-rich Low_complexity Low_complexity 2 43 0 775 152 0 0 chr4 55148705 55148830 -129139832 + L1PA16 LINE L1 6033 6157 -9 2297 79 10 0 chr4 55148912 55149215 -129139447 - AluY SINE Alu -5 306 1 1923 134 17 10 chr4 55149507 55149806 -129138856 - AluSx SINE Alu -11 301 1 893 256 73 43 chr4 55149811 55150304 -129138358 + L1M4c LINE L1 1946 2453 -3931 2216 91 14 0 chr4 55150317 55150604 -129138058 - AluSx SINE Alu -18 294 4 1024 111 0 25 chr4 55150607 55150769 -129137893 - MLT1A1 LTR MaLR -207 158 1 1348 234 30 10 chr4 55150781 55151084 -129137578 - MER21B LTR ERV1 -554 309 1 3089 217 151 7 chr4 55151084 55151987 -129136675 - L1M4c LINE L1 -5326 1058 26 2255 243 69 16 chr4 55152018 55152724 -129135938 - L1MC4a LINE L1 -359 7449 6698 1893 119 52 4 chr4 55152724 55153028 -129135634 - AluSq SINE Alu 0 317 1 2255 243 69 16 chr4 55153028 55153073 -129135589 - L1MC4a LINE L1 -1110 6698 6657 849 157 8 0 chr4 55153107 55153241 -129135421 - FLAM_C SINE Alu -8 135 1 2332 95 3 3 chr4 55153253 55153558 -129135104 - AluSp SINE Alu -8 305 1 636 257 39 5 chr4 55153561 55153767 -129134895 - L1M4 LINE L1 -2300 3846 3634 1977 132 42 0 chr4 55154435 55154724 -129133938 + AluSq SINE Alu 1 301 -12 2272 90 0 32 chr4 55155108 55155418 -129133244 - AluY SINE Alu -11 300 1 2974 42 0 0 chr4 55156018 55156377 -129132285 - L1PA5 LINE L1 0 6154 5796 1716 144 25 14 chr4 55156378 55156655 -129132007 - AluSx SINE Alu -7 305 26 229 194 83 0 chr4 55156656 55156728 -129131934 - L1M LINE L1 -960 5331 5254 1870 149 0 4 chr4 55157119 55157400 -129131262 + AluSx SINE Alu 1 280 -32 1032 81 0 0 chr4 55157534 55157670 -129130992 - AluSc SINE Alu 0 309 174 424 304 29 48 chr4 55157911 55158118 -129130544 + MLT1J2 LTR MaLR 1 203 -247 1367 165 162 12 chr4 55158232 55158717 -129129945 - L1MB7 LINE L1 -89 6095 5489 402 151 21 54 chr4 55158750 55158843 -129129819 + MER21B LTR ERV1 667 756 -107 2765 189 43 49 chr4 55158900 55159695 -129128967 + L1M4c LINE L1 1054 1843 -4541 9921 177 58 17 chr4 55159863 55160736 -129127926 - L1MB7 LINE L1 -937 5209 4373 2130 117 3 0 chr4 55160736 55161058 -129127604 - AluSx SINE Alu 0 323 1 9921 177 58 17 chr4 55161058 55161747 -129126915 - L1MB7 LINE L1 -1773 4373 3713 2155 99 0 0 chr4 55161747 55162020 -129126642 + AluSx SINE Alu 1 273 -39 309 26 0 0 chr4 55162026 55162064 -129126598 + (CA)n Simple_repeat Simple_repeat 1 38 0 9921 177 58 17 chr4 55162064 55162794 -129125868 - L1MB7 LINE L1 -2437 3709 2815 3620 173 27 22 chr4 55162797 55163489 -129125173 - L1MB4 LINE L1 -142 6038 5332 1251 156 38 165 chr4 55163489 55163907 -129124755 - MLT1A1 LTR MaLR 0 365 1 3620 173 27 22 chr4 55163907 55164044 -129124618 - L1MB4 LINE L1 -848 5332 5197 2014 151 10 10 chr4 55164235 55164540 -129124122 - AluSx SINE Alu -2 310 6 1437 213 37 20 chr4 55164546 55164770 -129123892 - L1MB4 LINE L1 -940 5206 4970 3951 102 43 5 chr4 55164770 55165348 -129123314 + MER4A LTR ERV1 1 600 0 1437 213 37 20 chr4 55165348 55165526 -129123136 - L1MB4 LINE L1 -1176 4970 4797 2358 65 7 7 chr4 55165555 55165848 -129122814 - AluY SINE Alu -18 293 1 273 328 82 35 chr4 55165858 55166090 -129122572 - L1MEd LINE L1 -5298 821 579 1485 140 36 52 chr4 55166338 55166603 -129122059 - MER34C LTR ERV1 -14 571 310 2396 108 0 0 chr4 55166603 55166910 -129121752 + AluSx SINE Alu 1 307 -5 1485 140 36 52 chr4 55166910 55166952 -129121710 - MER34C LTR ERV1 -275 310 269 1198 160 118 0 chr4 55166953 55167165 -129121497 + AluJb SINE Alu 64 300 -12 1983 128 0 28 chr4 55167193 55167483 -129121179 - AluSx SINE Alu -30 282 1 1820 80 17 0 chr4 55168072 55168334 -129120328 - AluSc SINE Alu 0 303 38 1650 168 7 20 chr4 55169268 55169566 -129119096 - AluJb SINE Alu -18 294 1 2242 110 13 0 chr4 55169766 55170074 -129118588 + AluSx SINE Alu 1 312 0 194 61 0 30 chr4 55170455 55170488 -129118174 + (TTC)n Simple_repeat Simple_repeat 1 32 0 2185 81 7 55 chr4 55171511 55171819 -129116843 + AluSx SINE Alu 1 293 -19 189 0 0 0 chr4 55172230 55172251 -129116411 + (TA)n Simple_repeat Simple_repeat 2 22 0 2291 105 3 0 chr4 55172251 55172546 -129116116 - AluSx SINE Alu -16 296 1 21 0 0 0 chr4 55173090 55173111 -129115551 + AT_rich Low_complexity Low_complexity 1 21 0 1340 316 118 28 chr4 55173299 55173931 -129114731 - L1M4 LINE L1 -1922 4224 3458 2039 103 9 91 chr4 55173931 55174272 -129114390 - AluSp SINE Alu 0 313 1 1340 316 118 28 chr4 55174272 55174692 -129113970 - L1M4 LINE L1 -2688 3458 3077 1509 177 92 14 chr4 55174696 55174979 -129113683 - AluJo SINE Alu -7 305 1 222 37 0 0 chr4 55175712 55175739 -129112923 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 799 191 21 7 chr4 55175875 55176016 -129112646 - MER5A DNA MER1_type -15 174 32 374 350 87 63 chr4 55176295 55176581 -129112081 + L2 LINE L2 2980 3272 0 463 100 0 0 chr4 55178149 55178229 -129110433 + L1MA4 LINE L1 6221 6300 0 1873 158 0 31 chr4 55178311 55178633 -129110029 + AluJo SINE Alu 1 312 0 2149 89 6 51 chr4 55179604 55179918 -129108744 - AluSx SINE Alu -12 300 1 21 71 0 0 chr4 55179928 55179970 -129108692 + AT_rich Low_complexity Low_complexity 1 42 0 216 319 42 78 chr4 55180012 55180178 -129108484 + MIR SINE MIR 41 200 -62 2368 64 3 0 chr4 55180237 55180533 -129108129 + AluY SINE Alu 1 297 -14 349 292 0 0 chr4 55180533 55180622 -129108040 + L1MC4 LINE L1 6615 6703 -1339 2141 90 7 0 chr4 55180753 55181031 -129107631 - AluSx SINE Alu -21 291 12 1706 107 70 70 chr4 55181211 55181509 -129107153 - AluSx SINE Alu -14 298 1 489 228 10 124 chr4 55183256 55183342 -129105320 + L2 LINE L2 3135 3187 -126 2389 106 0 0 chr4 55183342 55183653 -129105009 - AluSx SINE Alu -1 311 1 489 228 10 124 chr4 55183653 55183768 -129104894 + L2 LINE L2 3187 3313 0 293 243 60 28 chr4 55184311 55184462 -129104200 + L1ME LINE L1 5654 5803 -318 2414 62 0 16 chr4 55184564 55184870 -129103792 + AluY SINE Alu 1 301 -10 574 285 40 65 chr4 55186597 55186797 -129101865 + MIR SINE MIR 2 196 -66 2274 99 3 3 chr4 55186856 55187158 -129101504 + AluSx SINE Alu 1 302 -10 511 223 0 62 chr4 55187419 55187549 -129101113 + Tigger3(Golem) DNA MER2_type 1 122 -2907 * 3976 119 59 11 chr4 55187532 55187755 -129100907 + Tigger3(Golem) DNA MER2_type 2282 2493 -536 2144 139 0 10 chr4 55187755 55188058 -129100604 + AluJo SINE Alu 1 300 -12 3976 119 59 11 chr4 55188058 55188547 -129100115 + Tigger3(Golem) DNA MER2_type 2493 3028 -1 251 313 62 18 chr4 55188583 55188695 -129099967 - MIR SINE MIR -109 153 37 1226 149 22 59 chr4 55188871 55189093 -129099569 + AluJo SINE Alu 86 299 -13 2406 128 24 0 chr4 55189615 55189991 -129098671 + L1PA15 LINE L1 5778 6162 -3 340 259 36 18 chr4 55189991 55190103 -129098559 - L2 LINE L2 -502 2812 2699 24 53 0 0 chr4 55191252 55191290 -129097372 + AT_rich Low_complexity Low_complexity 1 38 0 1862 102 29 0 chr4 55192313 55192587 -129096075 - L1PA13 LINE L1 -7 6156 5875 869 146 8 0 chr4 55192589 55192719 -129095943 - AluJo SINE Alu -177 135 5 255 31 0 0 chr4 55194181 55194213 -129094449 + (CA)n Simple_repeat Simple_repeat 2 33 0 2227 54 10 7 chr4 55194876 55195174 -129093488 - L1PA8 LINE L1 0 6172 5874 700 72 39 44 chr4 55195236 55195416 -129093246 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1568 172 37 27 chr4 55195416 55195839 -129092823 - AluJb SINE Alu 0 438 13 41084 28 22 1 chr4 55195839 55201852 -129086810 + L1PA2 LINE L1 14 6155 0 571 298 91 39 chr4 55202450 55203045 -129085617 - L1ME2 LINE L1 -279 5885 5260 2145 127 0 9 chr4 55203093 55203408 -129085254 + AluSx SINE Alu 1 312 0 261 276 24 49 chr4 55203634 55203757 -129084905 - LTR16C LTR ERVL -242 249 130 661 298 71 67 chr4 55203865 55204385 -129084277 - L1ME2 LINE L1 -1328 4818 4297 372 330 36 40 chr4 55204423 55204647 -129084015 + L1 LINE L1 3825 4047 -2099 870 314 64 52 chr4 55204752 55204833 -129083829 - L1ME2 LINE L1 -2717 3429 3350 720 89 0 18 chr4 55204833 55204945 -129083717 - L1MB8 LINE L1 -1 6177 6068 870 314 64 52 chr4 55204945 55205152 -129083510 - L1ME2 LINE L1 -2796 3350 3147 243 0 0 0 chr4 55205152 55205179 -129083483 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2029 112 32 0 chr4 55205181 55205458 -129083204 - AluSg SINE Alu -24 286 1 870 314 64 52 chr4 55205458 55205913 -129082749 - L1ME2 LINE L1 -2999 3147 2673 454 153 0 144 chr4 55205942 55206009 -129082653 - FLAM_A SINE Alu -183 128 82 2343 89 7 0 chr4 55206009 55206311 -129082351 + AluSc SINE Alu 1 304 -5 454 153 0 144 chr4 55206311 55206354 -129082308 - FLAM_A SINE Alu -229 82 34 264 267 124 22 chr4 55206436 55206718 -129081944 - L1ME2 LINE L1 -3573 2573 2266 5236 142 24 4 chr4 55207355 55208916 -129079746 + L1PB2 LINE L1 4495 6081 -70 205 200 0 0 chr4 55209641 55209681 -129078981 + A-rich Low_complexity Low_complexity 1 40 0 2374 93 0 3 chr4 55209713 55210024 -129078638 + AluY SINE Alu 1 310 -1 180 77 0 0 chr4 55211681 55211707 -129076955 + (TC)n Simple_repeat Simple_repeat 1 26 0 183 42 0 0 chr4 55212921 55212945 -129075717 + (CAG)n Simple_repeat Simple_repeat 2 25 0 291 221 0 47 chr4 55213169 55213255 -129075407 + (CCCCG)n Simple_repeat Simple_repeat 5 86 0 276 224 0 0 chr4 55213528 55213586 -129075076 + L2 LINE L2 3184 3241 -31 207 0 0 0 chr4 55213964 55213987 -129074675 + (TTA)n Simple_repeat Simple_repeat 2 24 0 996 81 0 107 chr4 55213989 55214186 -129074476 - L1PA10 LINE L1 -20 6148 5973 240 35 0 0 chr4 55214809 55214838 -129073824 + (A)n Simple_repeat Simple_repeat 1 29 0 841 264 69 31 chr4 55215083 55215318 -129073344 - L1ME LINE L1 -453 5717 5493 2100 142 3 3 chr4 55215318 55215620 -129073042 - AluSx SINE Alu -9 303 2 841 264 69 31 chr4 55215620 55215855 -129072807 - L1ME LINE L1 -677 5493 5216 1751 176 0 14 chr4 55216496 55216774 -129071888 + AluJo SINE Alu 9 282 -30 183 80 0 0 chr4 55216775 55216800 -129071862 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 * 351 113 0 0 chr4 55216799 55216852 -129071810 + (CATA)n Simple_repeat Simple_repeat 2 54 0 1296 266 48 28 chr4 55216986 55217638 -129071024 - L2 LINE L2 -42 3271 2605 1809 150 56 6 chr4 55217641 55217981 -129070681 + L1MB7 LINE L1 5808 6164 -20 2111 150 16 22 chr4 55218500 55218827 -129069835 + MLT1A1 LTR MaLR 1 327 -38 1803 191 16 0 chr4 55218827 55219131 -129069531 - AluJb SINE Alu -3 309 1 2111 150 16 22 chr4 55219131 55219170 -129069492 + MLT1A1 LTR MaLR 327 365 0 2504 47 3 0 chr4 55219246 55219545 -129069117 + AluY SINE Alu 1 300 -11 6728 123 12 7 chr4 55220157 55221916 -129066746 - L1MA3 LINE L1 0 6305 4536 286 24 24 0 chr4 55223697 55223738 -129064924 - MADE1 DNA Mariner -38 42 1 948 88 8 0 chr4 55223868 55223993 -129064669 + AluJo SINE Alu 11 136 -176 262 401 7 7 chr4 55224777 55224919 -129063743 + MIR SINE MIR 1 142 -120 304 255 125 42 chr4 55225097 55225289 -129063373 + MLT1K LTR MaLR 359 566 -22 4137 149 69 98 chr4 55225684 55225992 -129062670 - L1MD2 LINE L1 -2 6357 6041 1911 120 0 63 chr4 55225992 55226308 -129062354 - AluSx SINE Alu -16 296 1 4137 149 69 98 chr4 55226308 55227198 -129061464 - L1MD2 LINE L1 -318 6041 5188 1729 175 4 0 chr4 55227207 55227487 -129061175 - AluJo SINE Alu -27 285 5 1722 188 90 22 chr4 55227717 55228084 -129060578 + MSTD LTR MaLR 3 394 -2 1486 168 0 0 chr4 55228513 55228745 -129059917 - AluSg/x SINE Alu -7 303 72 1366 171 9 0 chr4 55228756 55228978 -129059684 - AluJo SINE Alu -4 308 85 2080 146 0 0 chr4 55229936 55230230 -129058432 - AluSx SINE Alu -18 294 1 350 253 44 11 chr4 55230433 55230524 -129058138 - MIR SINE MIR -110 152 59 915 236 54 54 chr4 55230666 55231001 -129057661 + MER46C DNA MER2_type 4 338 0 2313 212 68 14 chr4 55231203 55231793 -129056869 - LTR27 LTR ERV1 0 636 15 27 0 0 0 chr4 55231825 55231852 -129056810 + AT_rich Low_complexity Low_complexity 1 27 0 1914 144 4 0 chr4 55232021 55232322 -129056340 + AluSx SINE Alu 6 307 0 257 270 20 10 chr4 55232790 55232890 -129055772 + MERVL LTR ERVL 5239 5339 -146 248 380 55 15 chr4 55233105 55233305 -129055357 + LTR16C LTR ERVL 168 375 -116 2064 212 138 47 chr4 55233380 55233931 -129054731 - MER77 LTR ERV1 -4 601 1 2001 118 6 48 chr4 55234074 55234387 -129054275 - AluSx SINE Alu -12 300 1 552 242 101 62 chr4 55234455 55234682 -129053980 - LTR16C LTR ERVL -255 236 1 1232 188 0 5 chr4 55236348 55236566 -129052096 + AluJo SINE Alu 86 302 -10 363 162 0 15 chr4 55236632 55236700 -129051962 + MLT1A2 LTR MaLR 308 374 0 199 322 0 0 chr4 55236761 55236820 -129051842 + L2 LINE L2 3214 3272 0 21 36 0 0 chr4 55237279 55237307 -129051355 + AT_rich Low_complexity Low_complexity 1 28 0 2749 96 0 3 chr4 55237717 55238082 -129050580 - THE1B LTR MaLR 0 364 1 1733 166 3 38 chr4 55239156 55239470 -129049192 - AluJo SINE Alu -9 303 1 250 258 135 34 chr4 55239870 55239959 -129048703 - MIR SINE MIR -130 132 35 1811 170 0 13 chr4 55239979 55240279 -129048383 + AluJo SINE Alu 1 296 -16 824 176 12 1 chr4 55241071 55241251 -129047411 - L1M4 LINE L1 -3133 4432 4252 18011 123 46 7 chr4 55241265 55244152 -129044510 - L1M4 LINE L1 -4546 3019 22 502 267 27 7 chr4 55244192 55244329 -129044333 + MLT2D LTR ERVL 206 348 -66 183 42 0 0 chr4 55244329 55244353 -129044309 + (CAAT)n Simple_repeat Simple_repeat 1 24 0 502 267 27 7 chr4 55244353 55244365 -129044297 + MLT2D LTR ERVL 348 358 -56 14348 98 97 7 chr4 55244528 55246473 -129042189 + L1PBa LINE L1 154 2426 -4437 1918 125 68 0 chr4 55246473 55246753 -129041909 + AluSx SINE Alu 1 299 -13 14348 98 97 7 chr4 55246753 55247256 -129041406 + L1PBa LINE L1 2426 2882 -3981 1995 154 3 0 chr4 55297460 55297758 -128990904 + AluSx SINE Alu 1 299 -13 335 200 29 0 chr4 55297830 55297900 -128990762 - MIR SINE MIR 0 262 191 243 354 13 0 chr4 55298828 55298907 -128989755 + MIR SINE MIR 42 121 -87 1717 224 25 7 chr4 55300192 55300598 -128988064 - L1M4 LINE L1 -1246 4900 4488 26 0 0 0 chr4 55300748 55300774 -128987888 + AT_rich Low_complexity Low_complexity 1 26 0 7392 26 1 0 chr4 55302476 55304007 -128984655 - L1PA3 LINE L1 -145 6010 4479 280 239 84 0 chr4 55304108 55304179 -128984483 + MER46C DNA MER2_type 261 337 -1 748 182 0 15 chr4 55304575 55304707 -128983955 - FLAM_C SINE Alu -3 130 1 584 213 16 8 chr4 55304896 55305018 -128983644 - MIR SINE MIR -138 124 2 2279 92 3 9 chr4 55306267 55306582 -128982080 - AluSq SINE Alu 0 313 1 213 350 19 29 chr4 55306789 55306892 -128981770 + L2 LINE L2 2642 2743 -571 1233 256 157 21 chr4 55306893 55307207 -128981455 - MLT1G1 LTR MaLR 0 595 325 207 69 0 0 chr4 55307207 55307236 -128981426 + (CA)n Simple_repeat Simple_repeat 2 30 0 1233 256 157 21 chr4 55307236 55307445 -128981217 - MLT1G1 LTR MaLR -270 325 1 203 217 17 50 chr4 55307459 55307519 -128981143 + L2 LINE L2 3255 3312 -1 1584 170 83 0 chr4 55307589 55307877 -128980785 - AluJb SINE Alu 0 312 1 1823 174 52 38 chr4 55307882 55308307 -128980355 - L1MB7 LINE L1 0 6184 5754 1367 112 36 0 chr4 55308407 55308630 -128980032 - L1P LINE L1 -838 5308 5078 2238 82 0 27 chr4 55308640 55308932 -128979730 - AluY SINE Alu -23 288 5 812 261 64 20 chr4 55308997 55309246 -128979416 + MIR SINE MIR 2 261 -1 3843 87 0 0 chr4 55310589 55311165 -128977497 + L1P5 LINE L1 5200 5775 -376 382 236 37 62 chr4 55311523 55311684 -128976978 + L1ME4a LINE L1 5950 6106 -15 335 234 149 6 chr4 55311935 55312110 -128976552 - L1ME4a LINE L1 -157 5964 5765 427 370 31 35 chr4 55312120 55312374 -128976288 + L2 LINE L2 3008 3260 -12 469 290 52 34 chr4 55312374 55312643 -128976019 - L1ME4a LINE L1 -372 5749 5476 23 68 0 0 chr4 55312887 55312931 -128975731 + AT_rich Low_complexity Low_complexity 1 44 0 205 299 15 0 chr4 55313102 55313169 -128975493 + L2 LINE L2 2307 2374 -940 615 155 31 16 chr4 55313243 55313372 -128975290 + MER33 DNA MER1_type 52 182 -142 2205 212 113 31 chr4 55313420 55314090 -128974572 - MER50 LTR ERV1 0 734 10 3038 134 59 50 chr4 55314713 55315213 -128973449 + LTR26 LTR ERV1 1 508 -95 1718 158 3 21 chr4 55315213 55315498 -128973164 - AluJo SINE Alu -30 282 3 3038 134 59 50 chr4 55315498 55315594 -128973068 + LTR26 LTR ERV1 508 602 -1 2235 126 16 6 chr4 55315688 55316052 -128972610 - L1PB1 LINE L1 -8 6143 5776 205 127 13 51 chr4 55316063 55316142 -128972520 + (TA)n Simple_repeat Simple_repeat 2 77 0 371 256 23 0 chr4 55316254 55316340 -128972322 + MER5A DNA MER1_type 19 106 -83 223 277 40 59 chr4 55316796 55316897 -128971765 + MIR SINE MIR 42 140 -68 1933 155 0 3 chr4 55317006 55317297 -128971365 + AluJb SINE Alu 3 292 -20 531 232 58 29 chr4 55317517 55317724 -128970938 - L1ME3A LINE L1 -231 5939 5727 473 56 127 0 chr4 55317794 55317865 -128970797 + MADE1 DNA Mariner 1 80 0 496 231 88 14 chr4 55317897 55318044 -128970618 + MER5B DNA MER1_type 1 158 -20 309 280 108 0 chr4 55318099 55318192 -128970470 - L1ME3A LINE L1 -510 5660 5558 313 262 41 9 chr4 55318224 55318373 -128970289 - L1ME3A LINE L1 -733 5431 5278 424 297 92 20 chr4 55318413 55318608 -128970054 - L1ME3A LINE L1 -913 5233 5025 364 237 30 53 chr4 55318979 55319110 -128969552 - MIR SINE MIR -11 251 124 226 374 34 53 chr4 55319183 55319389 -128969273 + L2 LINE L2 2891 3092 -180 198 398 12 0 chr4 55319417 55319500 -128969162 + MIR SINE MIR 47 130 -78 1501 120 0 13 chr4 55319523 55319748 -128968914 - AluJo SINE Alu 0 312 91 450 204 51 0 chr4 55319774 55319872 -128968790 - MIR SINE MIR -111 151 49 342 45 0 0 chr4 55319881 55319925 -128968737 + (CCAA)n Simple_repeat Simple_repeat 4 47 0 667 164 82 25 chr4 55320119 55320278 -128968384 - MLT1B LTR MaLR -222 168 1 301 239 142 22 chr4 55320282 55320328 -128968334 - L1ME3A LINE L1 -1712 4434 4395 1385 215 52 7 chr4 55320328 55320616 -128968046 - AluJo SINE Alu -11 301 1 301 239 142 22 chr4 55320616 55320703 -128967959 - L1ME3A LINE L1 -1751 4395 4285 307 245 154 0 chr4 55321679 55321822 -128966840 + L1ME4a LINE L1 5954 6118 -3 185 254 109 0 chr4 55322366 55322421 -128966241 + MIR SINE MIR 104 164 -98 1258 193 112 11 chr4 55322704 55322973 -128965689 - AluJb SINE Alu -16 296 1 1797 163 3 0 chr4 55323130 55323444 -128965218 + AluJb SINE Alu 1 315 0 2204 112 3 3 chr4 55324254 55324558 -128964104 - AluSx SINE Alu -8 304 1 306 322 92 0 chr4 55325916 55326068 -128962594 - L1ME4a LINE L1 -7 6114 5949 274 229 19 38 chr4 55326096 55326201 -128962461 - L1ME4a LINE L1 -277 5844 5742 304 327 76 40 chr4 55326259 55326482 -128962180 - L1ME4a LINE L1 -399 5722 5492 275 328 54 29 chr4 55327019 55327223 -128961439 - L1ME3A LINE L1 -1974 4172 3964 2090 113 0 17 chr4 55327296 55327596 -128961066 - AluSc SINE Alu -8 301 7 447 277 72 30 chr4 55327918 55328084 -128960578 + MIR SINE MIR 48 220 -42 410 254 196 58 chr4 55329244 55329693 -128958969 + L1ME4a LINE L1 5547 6057 -64 352 267 71 88 chr4 55329727 55329967 -128958695 - L1ME4a LINE L1 -1981 4165 3930 1715 171 7 10 chr4 55329984 55330276 -128958386 - AluJo SINE Alu -21 291 1 1992 128 0 0 chr4 55330334 55330599 -128958063 + AluSx SINE Alu 1 265 -47 272 304 0 25 chr4 55330777 55330856 -128957806 - MIR3 SINE MIR -49 159 83 1137 136 6 0 chr4 55330951 55331120 -128957542 + AluJb SINE Alu 129 298 -14 1919 127 40 13 chr4 55331806 55332106 -128956556 + AluSx SINE Alu 1 308 -4 531 268 193 28 chr4 55332833 55333046 -128955616 + MIR SINE MIR 12 259 -3 2347 86 7 0 chr4 55333334 55333635 -128955027 + AluSp SINE Alu 6 308 -5 33 73 0 0 chr4 55333826 55333894 -128954768 + AT_rich Low_complexity Low_complexity 1 68 0 1996 133 7 7 chr4 55333985 55334285 -128954377 - AluSx SINE Alu -12 300 1 397 56 0 0 chr4 55334841 55334895 -128953767 + L1PB1 LINE L1 6095 6148 -3 304 247 49 0 chr4 55334924 55335005 -128953657 + MIR SINE MIR 119 203 -59 1914 134 131 36 chr4 55336320 55336708 -128951954 + MSTA LTR MaLR 4 428 0 190 369 54 18 chr4 55337086 55337197 -128951465 - L2 LINE L2 -26 3287 3173 2037 118 0 0 chr4 55337327 55337599 -128951063 - AluY SINE Alu -39 272 1 2169 131 131 8 chr4 55337835 55338216 -128950446 + MSTA LTR MaLR 1 428 0 264 272 184 10 chr4 55338270 55338373 -128950289 - MIR3 SINE MIR -5 203 83 1674 154 5 118 chr4 55338521 55338910 -128949752 - MER7A DNA MER2_type -3 343 1 471 263 124 21 chr4 55338922 55339249 -128949413 + MLT1L LTR MaLR 195 605 -10 460 279 70 0 chr4 55339263 55339392 -128949270 + L2 LINE L2 3163 3300 -13 183 100 0 0 chr4 55339392 55339422 -128949240 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 287 359 71 18 chr4 55339422 55339586 -128949076 + L2 LINE L2 2735 2907 -407 1222 208 67 45 chr4 55339593 55339949 -128948713 - MLT1A1 LTR MaLR -1 364 1 685 95 11 0 chr4 55344210 55344347 -128944315 - AluSg/x SINE Alu 0 323 186 23 54 0 0 chr4 55344564 55344601 -128944061 + AT_rich Low_complexity Low_complexity 1 37 0 180 0 0 0 chr4 55344778 55344798 -128943864 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 273 29 0 0 chr4 55344797 55344831 -128943831 + (CA)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr4 55344871 55344893 -128943769 + AT_rich Low_complexity Low_complexity 1 22 0 1837 138 14 7 chr4 55344893 55345184 -128943478 - AluJo SINE Alu -19 293 1 507 264 82 50 chr4 55345628 55345848 -128942814 - MIR SINE MIR -24 238 12 330 304 130 0 chr4 55345930 55346045 -128942617 - MIR SINE MIR -130 132 3 23 78 0 0 chr4 55346264 55346315 -128942347 + AT_rich Low_complexity Low_complexity 1 51 0 2403 98 0 13 chr4 55346322 55346639 -128942023 + AluSq SINE Alu 1 313 0 408 61 0 158 chr4 55347458 55347540 -128941122 + Charlie5 DNA MER1_type 2517 2585 -27 1863 117 124 72 chr4 55347927 55348355 -128940307 + LTR47A LTR ERVL 1 450 -2 402 229 136 30 chr4 55348823 55349009 -128939653 + L1MA10 LINE L1 5953 6332 -2 1073 250 47 50 chr4 55349362 55349766 -128938896 - LTR16A1 LTR ERVL 0 457 55 2643 119 67 5 chr4 55349766 55350186 -128938476 + MSTB2 LTR MaLR 12 457 0 510 248 93 0 chr4 55350189 55350318 -128938344 + MIR SINE MIR 84 224 -38 480 208 129 0 chr4 55350621 55350722 -128937940 + FRAM SINE Alu 1 114 -62 31 0 0 0 chr4 55350734 55350765 -128937897 + AT_rich Low_complexity Low_complexity 1 31 0 2306 79 0 0 chr4 55352804 55353119 -128935543 - AluSg SINE Alu 0 315 1 1499 212 80 46 chr4 55353156 55353721 -128934941 + LTR24B LTR ERV1 2 635 0 547 322 74 28 chr4 55354296 55354619 -128934043 - L2 LINE L2 -941 2373 2036 185 286 54 0 chr4 55354653 55354709 -128933953 + MIR SINE MIR 83 141 -67 2285 91 0 10 chr4 55355141 55355438 -128933224 - AluSq SINE Alu -19 294 1 364 277 71 14 chr4 55355893 55356034 -128932628 + L2 LINE L2 3150 3298 -15 254 308 55 22 chr4 55356367 55356458 -128932204 - L2 LINE L2 -38 3234 3141 1803 163 0 4 chr4 55356678 55356954 -128931708 + AluJb SINE Alu 3 277 -35 1641 190 0 10 chr4 55357324 55357624 -128931038 + AluJb SINE Alu 1 297 -15 542 182 0 0 chr4 55358468 55358556 -128930106 + AluJo SINE Alu 109 196 -116 2527 56 0 7 chr4 55359169 55359474 -128929188 + AluYa5 SINE Alu 3 305 -6 1231 109 29 0 chr4 55359476 55359650 -128929012 + AluSg/x SINE Alu 128 306 -6 2395 89 3 3 chr4 55360007 55360320 -128928342 + AluSp SINE Alu 1 313 0 268 221 148 27 chr4 55361402 55361551 -128927111 + L1ME4a LINE L1 5944 6110 -11 33 0 0 0 chr4 55361552 55361585 -128927077 + AT_rich Low_complexity Low_complexity 1 33 0 1283 159 93 23 chr4 55361763 55362065 -128926597 - MER33 DNA MER1_type -1 323 1 1402 108 26 0 chr4 55362917 55363112 -128925550 - AluSg/x SINE Alu -21 291 92 343 368 133 14 chr4 55363212 55363853 -128924809 + L2 LINE L2 1968 2684 -630 2362 94 0 0 chr4 55364024 55364323 -128924339 + AluSx SINE Alu 1 299 -13 235 208 161 40 chr4 55365252 55365401 -128923261 + L1ME4a LINE L1 5944 6110 -11 33 0 0 0 chr4 55365402 55365435 -128923227 + AT_rich Low_complexity Low_complexity 1 33 0 247 204 0 0 chr4 55365672 55365716 -128922946 - AluJ/monomer SINE Alu -258 44 1 796 168 220 119 chr4 55365726 55366262 -128922400 - Charlie2 DNA MER1_type -32 2830 2241 844 264 42 77 chr4 55366303 55366640 -128922022 - Charlie2 DNA MER1_type -2457 325 1 3241 187 47 21 chr4 55366674 55367401 -128921261 + L1 LINE L1 3957 4702 -1444 1999 104 0 14 chr4 55368112 55368390 -128920272 + AluSp SINE Alu 40 313 0 1201 145 50 0 chr4 55368412 55368612 -128920050 - L1MB7 LINE L1 -194 5990 5781 208 0 0 0 chr4 55368796 55368819 -128919843 + (TTTA)n Simple_repeat Simple_repeat 2 76 0 1670 193 7 3 chr4 55368819 55369104 -128919558 - AluJo SINE Alu -1 308 1 208 170 75 19 chr4 55369451 55369504 -128919158 + L2 LINE L2 3187 3242 -71 182 291 99 92 chr4 55369677 55369818 -128918844 - MIR SINE MIR -2 260 119 189 0 0 0 chr4 55370413 55370434 -128918228 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 254 291 186 0 chr4 55370434 55370520 -128918142 - L2 LINE L2 -13 3300 3199 2186 125 3 0 chr4 55370801 55371097 -128917565 + AluSx SINE Alu 1 297 -15 419 313 20 62 chr4 55371104 55371299 -128917363 - L2 LINE L2 0 3313 3127 245 329 36 64 chr4 55371322 55371462 -128917200 - L2 LINE L2 -296 3017 2882 722 191 83 0 chr4 55371508 55371665 -128916997 + MIR SINE MIR 52 221 -41 2186 80 11 0 chr4 55371682 55371968 -128916694 + AluSp SINE Alu 1 289 -24 823 338 161 12 chr4 55372143 55372915 -128915747 + L2 LINE L2 1212 2098 -1216 322 250 136 0 chr4 55372975 55373063 -128915599 + L2 LINE L2 3213 3312 -1 337 205 26 0 chr4 55373139 55373217 -128915445 + MER116 DNA Mariner 1 80 0 935 151 25 25 chr4 55374878 55375037 -128913625 + AluJo SINE Alu 1 159 -153 1597 186 0 39 chr4 55375519 55375831 -128912831 - AluJb SINE Alu -9 303 4 392 305 117 0 chr4 55376123 55376251 -128912411 + MIR SINE MIR 55 197 -65 1249 163 53 0 chr4 55376258 55376522 -128912140 - L1MA7 LINE L1 0 6291 6014 181 273 299 0 chr4 55376634 55376711 -128911951 - L2 LINE L2 -9 3263 3164 358 303 71 75 chr4 55376914 55377181 -128911481 - L2 LINE L2 -40 3273 3008 1796 183 3 0 chr4 55377267 55377562 -128911100 - AluJo SINE Alu -16 296 1 308 107 36 0 chr4 55377958 55378014 -128910648 - LTR49 LTR ERV1 -72 523 466 771 225 11 37 chr4 55378372 55378563 -128910099 - MER5A DNA MER1_type -1 188 3 36319 40 1 2 chr4 55379722 55384135 -128904527 - L1P LINE L1 -1737 4409 1 2332 201 33 39 chr4 55384622 55384932 -128903730 - L1MD3 LINE L1 0 7982 7671 1695 163 26 93 chr4 55384932 55385349 -128903313 + MLT1B LTR MaLR 2 390 0 2332 201 33 39 chr4 55385349 55385747 -128902915 - L1MD3 LINE L1 -311 7671 7104 1337 177 45 8 chr4 55385747 55386011 -128902651 - AluJo SINE Alu 0 303 31 1722 162 39 42 chr4 55386015 55386429 -128902233 - L1MA8 LINE L1 -24 6276 5809 339 136 15 15 chr4 55386503 55386569 -128902093 - L1MB8 LINE L1 -20 6158 6093 414 143 54 54 chr4 55386577 55386689 -128901973 - L1MB3 LINE L1 0 6183 6072 3267 74 4 58 chr4 55386800 55387297 -128901365 + L1PB1 LINE L1 5680 6149 -2 27 0 0 0 chr4 55387298 55387325 -128901337 + AT_rich Low_complexity Low_complexity 1 27 0 418 257 123 45 chr4 55387676 55387855 -128900807 - MIR3 SINE MIR -13 195 3 368 246 103 36 chr4 55388595 55388790 -128899872 - L1ME4a LINE L1 -6 6115 5908 381 273 0 9 chr4 55388892 55389002 -128899660 - L1ME4a LINE L1 -274 5847 5739 223 322 185 15 chr4 55389002 55389207 -128899455 + L3 LINE CR1 260 499 -1078 * 329 294 49 29 chr4 55389203 55389305 -128899357 + L2 LINE L2 3169 3272 0 699 274 60 0 chr4 55389360 55389561 -128899101 + MIR SINE MIR 41 253 -9 348 233 141 58 chr4 55389626 55389832 -128898830 + L3 LINE CR1 624 846 -731 180 314 194 24 chr4 55390134 55390258 -128898404 + L3 LINE CR1 1433 1577 0 324 262 58 122 chr4 55391618 55391790 -128896872 - L2 LINE L2 -19 3253 3093 511 339 41 37 chr4 55392695 55392913 -128895749 + MIR SINE MIR 26 244 -18 185 0 40 0 chr4 55392915 55392940 -128895722 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 243 0 0 0 chr4 55393254 55393281 -128895381 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1680 158 7 44 chr4 55393285 55393582 -128895080 - AluJo SINE Alu -26 286 1 423 329 120 54 chr4 55394546 55394953 -128893709 - L2 LINE L2 -2 3270 2837 783 119 0 42 chr4 55395298 55395441 -128893221 + AluSg/x SINE Alu 176 312 0 293 239 136 11 chr4 55396595 55396683 -128891979 - MIR SINE MIR -101 161 63 2121 133 7 0 chr4 55397516 55397817 -128890845 + AluSx SINE Alu 1 303 -9 235 268 42 28 chr4 55398539 55398610 -128890052 - MIR3 SINE MIR -4 204 133 367 163 12 25 chr4 55398786 55398866 -128889796 + MER116 DNA Mariner 1 79 -1 697 237 0 0 chr4 55400802 55400933 -128887729 - FLAM_A SINE Alu -2 131 1 476 250 78 9 chr4 55401077 55401193 -128887469 + L2 LINE L2 3186 3309 -4 24 53 0 0 chr4 55401824 55401862 -128886800 + AT_rich Low_complexity Low_complexity 1 38 0 1805 159 29 63 chr4 55401916 55401961 -128886701 - MER47A DNA MER2_type -1957 366 321 1970 154 0 0 chr4 55401961 55402273 -128886389 - AluJb SINE Alu 0 312 1 1805 159 29 63 chr4 55402273 55402605 -128886057 - MER47A DNA MER2_type -2002 321 2 721 137 0 0 chr4 55402847 55402949 -128885713 - U6 snRNA snRNA -5 102 1 483 306 94 17 chr4 55405053 55405321 -128883341 - L1MC4a LINE L1 -303 5818 5569 1506 137 4 0 chr4 55406080 55406306 -128882356 + AluJb SINE Alu 85 311 -1 289 196 174 0 chr4 55406359 55406451 -128882211 + MER87 LTR ERV1 396 503 -38 230 280 27 13 chr4 55406453 55406528 -128882134 + LTR38 LTR ERV1 474 549 -7 691 92 10 10 chr4 55406567 55406665 -128881997 + MER4A LTR ERV1 1 98 -566 1856 121 159 73 chr4 55406665 55407037 -128881625 + MER4A LTR ERV1 261 664 0 38 0 0 0 chr4 55408133 55408171 -128880491 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr4 55408525 55408548 -128880114 + AT_rich Low_complexity Low_complexity 1 23 0 653 239 130 39 chr4 55408830 55409324 -128879338 + L2 LINE L2 2697 3313 0 270 389 57 6 chr4 55409632 55409807 -128878855 + L2 LINE L2 2867 3050 -222 199 158 70 70 chr4 55410973 55411030 -128877632 - L3 LINE CR1 -2 1575 1519 686 177 118 15 chr4 55411848 55412063 -128876599 + MER46C DNA MER2_type 2 269 -69 245 260 110 119 chr4 55413454 55413673 -128874989 + L2 LINE L2 3038 3254 -18 22 0 0 0 chr4 55414789 55414811 -128873851 + AT_rich Low_complexity Low_complexity 1 22 0 782 200 118 6 chr4 55415082 55415252 -128873410 + MER5A DNA MER1_type 1 189 0 284 0 28 0 chr4 55416111 55416147 -128872515 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1884 154 4 0 chr4 55417381 55417685 -128870977 - AluSx SINE Alu 0 306 2 32 67 0 0 chr4 55418586 55418646 -128870016 + AT_rich Low_complexity Low_complexity 1 60 0 277 170 21 0 chr4 55420304 55420351 -128868311 + MSTB LTR MaLR 379 426 0 601 274 98 25 chr4 55420352 55420626 -128868036 + L1ME LINE L1 3784 4077 -2069 711 245 92 45 chr4 55420716 55421141 -128867521 + L1ME LINE L1 4243 4687 -1459 772 239 82 30 chr4 55421177 55421685 -128866977 + L1ME LINE L1 4968 5512 -650 4852 145 42 43 chr4 55422225 55422777 -128865885 + L1MB7 LINE L1 5267 5819 -365 2274 53 40 20 chr4 55422777 55423080 -128865582 + AluY SINE Alu 1 309 -2 4852 145 42 43 chr4 55423080 55423446 -128865216 + L1MB7 LINE L1 5819 6184 0 208 370 88 22 chr4 55424132 55424405 -128864257 + L2 LINE L2 1242 1532 -1782 308 316 79 43 chr4 55424476 55424615 -128864047 + L2 LINE L2 2909 3052 -220 324 208 169 0 chr4 55425615 55425692 -128862970 - L2 LINE L2 -1 3312 3223 597 211 0 0 chr4 55426935 55427039 -128861623 + MER5B DNA MER1_type 75 178 0 537 223 216 7 chr4 55427051 55427199 -128861463 + MER5A DNA MER1_type 4 182 -7 192 309 130 49 chr4 55427239 55427362 -128861300 - L2 LINE L2 -1 3271 3139 473 245 14 50 chr4 55427675 55427814 -128860848 + L2 LINE L2 2250 2383 -931 349 356 52 47 chr4 55427829 55428191 -128860471 - LTR16C LTR ERVL -50 441 78 567 323 91 27 chr4 55428476 55428885 -128859777 - HERVL LTR ERVL -351 5303 4869 830 119 0 8 chr4 55428926 55429044 -128859618 - AluSg/x SINE Alu -17 295 179 682 270 67 41 chr4 55429045 55429315 -128859347 + L2 LINE L2 2986 3262 -51 692 213 7 0 chr4 55429319 55429469 -128859193 - MIR SINE MIR 0 262 112 4480 132 22 78 chr4 55429600 55430431 -128858231 + LTR1 LTR ERV1 1 784 -1 571 266 73 21 chr4 55430431 55430649 -128858013 + MIR SINE MIR 36 262 0 1477 144 25 61 chr4 55431587 55431865 -128856797 - AluSx SINE Alu 0 312 45 28 29 0 0 chr4 55432068 55432103 -128856559 + AT_rich Low_complexity Low_complexity 1 35 0 1151 224 22 40 chr4 55432257 55432659 -128856003 - L1M4 LINE L1 -707 5467 5076 628 332 70 40 chr4 55432813 55433268 -128855394 - L2 LINE L2 -1034 2280 1812 1988 124 3 0 chr4 55433324 55433607 -128855055 + AluSc SINE Alu 25 308 -1 250 203 119 0 chr4 55433675 55433734 -128854928 - LTR33A LTR ERVL 0 523 458 1754 170 6 35 chr4 55433734 55434051 -128854611 + AluJb SINE Alu 1 308 -4 271 275 62 12 chr4 55434472 55434552 -128854110 - MIR SINE MIR -156 106 23 1818 174 3 19 chr4 55435136 55435453 -128853209 + AluJb SINE Alu 1 312 0 2347 100 0 0 chr4 55435815 55436114 -128852548 + AluSx SINE Alu 1 299 -13 257 183 83 0 chr4 55436354 55436414 -128852248 - MIR SINE MIR -1 261 197 1749 154 47 27 chr4 55436504 55436803 -128851859 - AluJb SINE Alu -7 305 1 2429 132 124 75 chr4 55436877 55436919 -128851743 - MLT2B2 LTR ERVL 0 515 477 396 0 0 0 chr4 55436919 55436963 -128851699 + (CA)n Simple_repeat Simple_repeat 2 45 0 2429 132 124 75 chr4 55436963 55437411 -128851251 - MLT2B2 LTR ERVL -38 477 1 4432 127 6 9 chr4 55438893 55439530 -128849132 - MER41B LTR ERV1 0 635 1 2374 62 7 0 chr4 55439577 55439868 -128848794 + AluY SINE Alu 1 293 -18 241 312 65 11 chr4 55440770 55440863 -128847799 + LTR40a LTR ERVL 259 356 -163 * 443 255 114 7 chr4 55440815 55440964 -128847698 - LTR68 LTR ERV1 -575 165 1 4563 83 4 0 chr4 55440992 55441544 -128847118 + MER41A LTR ERV1 1 554 0 378 313 67 67 chr4 55441562 55441596 -128847066 + L3 LINE CR1 951 984 -593 2395 181 59 121 chr4 55441596 55442371 -128846291 + LTR8A LTR ERV1 1 727 0 378 313 67 67 chr4 55442371 55442604 -128846058 + L3 LINE CR1 983 1218 -359 184 243 0 0 chr4 55442668 55442705 -128845957 + L3 LINE CR1 1341 1377 -200 538 186 134 0 chr4 55442806 55442903 -128845759 - FLAM_C SINE Alu -32 111 2 276 291 128 8 chr4 55443491 55443608 -128845054 - L2 LINE L2 -4 3268 3138 1821 166 68 16 chr4 55444605 55444972 -128843690 - MLT1C LTR MaLR -43 424 39 1610 169 0 0 chr4 55444975 55445235 -128843427 - AluJo SINE Alu -52 260 1 966 217 43 83 chr4 55445762 55446020 -128842642 - HAL1 LINE L1 -2161 346 104 1843 120 29 7 chr4 55446020 55446294 -128842368 + AluJb SINE Alu 1 280 -32 966 217 43 83 chr4 55446294 55446385 -128842277 - HAL1 LINE L1 -2403 104 11 226 254 0 18 chr4 55446405 55446460 -128842202 - L1MEd LINE L1 -4893 1226 1173 918 240 127 36 chr4 55446478 55446841 -128841821 - MLT1E2 LTR MaLR 0 626 231 221 0 35 0 chr4 55446854 55446883 -128841779 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 5093 109 33 2 chr4 55446888 55447934 -128840728 - L1MA3 LINE L1 -321 5984 4904 383 78 0 0 chr4 55448044 55448095 -128840567 - L1MA3 LINE L1 -1518 4628 4578 6871 117 28 13 chr4 55448095 55449137 -128839525 + MER11C LTR ERVK 1 1057 -14 4352 156 50 5 chr4 55449139 55449734 -128838928 - L1MA3 LINE L1 -1561 4585 3943 1738 173 7 17 chr4 55449734 55450034 -128838628 - AluJb SINE Alu -15 297 1 4352 156 50 5 chr4 55450034 55450239 -128838423 - L1MA3 LINE L1 -2203 3943 3749 579 110 0 0 chr4 55450239 55450321 -128838341 + MSTA LTR MaLR 347 428 0 476 261 80 11 chr4 55450801 55450977 -128837685 - MER51D LTR ERV1 0 657 470 428 198 0 0 chr4 55451080 55451161 -128837501 - MER51D LTR ERV1 -319 338 258 644 316 59 35 chr4 55451294 55451851 -128836811 - HERV17 LTR ERV1 0 8184 7542 2679 316 60 53 chr4 55453079 55455967 -128832695 - HERV17 LTR ERV1 -1488 6268 3363 584 275 31 43 chr4 55456365 55456648 -128832014 - HERV17 LTR ERV1 -5271 2204 1550 3707 58 5 7 chr4 55456655 55457104 -128831558 + LTR7 LTR ERV1 1 448 -2 260 139 23 0 chr4 55457223 55457266 -128831396 - HERV17 LTR ERV1 -7045 771 728 2426 93 0 0 chr4 55457840 55458150 -128830512 + AluSx SINE Alu 1 310 -2 1736 173 108 47 chr4 55458285 55458779 -128829883 + LTR61 LTR ERV1 1 595 0 302 139 111 28 chr4 55458869 55458941 -128829721 - HERV17 LTR ERV1 -7738 78 1 485 249 85 23 chr4 55458941 55459118 -128829544 - MER51D LTR ERV1 0 657 470 299 149 0 0 chr4 55459218 55459265 -128829397 - MER51D LTR ERV1 -324 333 287 267 277 124 40 chr4 55461331 55461508 -128827154 + MIR SINE MIR 13 204 -58 841 163 0 0 chr4 55461657 55461780 -128826882 + FLAM_C SINE Alu 1 123 -10 21 0 0 0 chr4 55461786 55461807 -128826855 + AT_rich Low_complexity Low_complexity 1 21 0 3228 192 70 57 chr4 55461915 55463050 -128825612 - L1ME2 LINE L1 0 6164 5000 1849 117 0 155 chr4 55463742 55464154 -128824508 - MER7A DNA MER2_type 0 346 1 771 160 0 0 chr4 55464549 55464679 -128823983 + FLAM_A SINE Alu 10 139 0 35 41 0 0 chr4 55464789 55464838 -128823824 + AT_rich Low_complexity Low_complexity 1 49 0 1883 157 14 0 chr4 55465961 55466254 -128822408 + AluJb SINE Alu 3 299 -13 186 161 81 65 chr4 55466254 55466316 -128822346 - MER5A DNA MER1_type -61 128 66 263 328 69 28 chr4 55466591 55466838 -128821824 + L2 LINE L2 2638 2894 -420 188 246 43 29 chr4 55466906 55466975 -128821687 + L2 LINE L2 2956 3025 -247 547 248 133 41 chr4 55467124 55467342 -128821320 + MIR SINE MIR 20 257 -5 251 71 24 0 chr4 55467946 55467988 -128820674 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1643 270 92 27 chr4 55468065 55468772 -128819890 + HAL1 LINE L1 23 775 -1732 1047 218 47 44 chr4 55468778 55469122 -128819540 + HAL1 LINE L1 821 1165 -1342 562 154 22 0 chr4 55469126 55469217 -128819445 + U6 snRNA snRNA 7 99 -8 4238 145 47 0 chr4 55469226 55469901 -128818761 + L1MB3 LINE L1 5476 6182 -1 549 256 63 16 chr4 55469901 55470083 -128818579 + HAL1 LINE L1 2310 2503 -4 1928 158 3 3 chr4 55470155 55470459 -128818203 + AluJb SINE Alu 1 304 -8 2369 113 0 0 chr4 55470926 55471237 -128817425 - AluSx SINE Alu -1 311 1 255 266 13 13 chr4 55471828 55471907 -128816755 - MIR3 SINE MIR -5 203 125 549 299 36 0 chr4 55471950 55472117 -128816545 - MIR SINE MIR -69 193 21 187 381 0 52 chr4 55472118 55472215 -128816447 - MIR SINE MIR -84 124 33 285 281 129 28 chr4 55472364 55472542 -128816120 - MIR3 SINE MIR -8 200 5 2211 116 0 0 chr4 55473341 55473633 -128815029 + AluSx SINE Alu 1 292 -20 905 273 23 34 chr4 55474175 55474439 -128814223 - MIR SINE MIR -1 261 1 2264 221 146 7 chr4 55474501 55475193 -128813469 + LTR50 LTR ERVL 1 788 -7 463 230 22 65 chr4 55475661 55475800 -128812862 + MIR SINE MIR 30 162 -100 2141 119 10 13 chr4 55475901 55476212 -128812450 + AluSx SINE Alu 1 310 -2 315 350 100 52 chr4 55476263 55476592 -128812070 - L2 LINE L2 -1 3271 2927 1567 183 33 50 chr4 55476592 55476893 -128811769 + AluJo SINE Alu 1 296 -16 2643 182 35 50 chr4 55477110 55477676 -128810986 - MER74A LTR ERVL 0 558 1 237 359 0 0 chr4 55477811 55477889 -128810773 + L2 LINE L2 2999 3076 -196 634 253 66 95 chr4 55478076 55478380 -128810282 - MLT1K LTR MaLR -5 583 289 345 210 49 0 chr4 55478428 55478509 -128810153 - LTR50 LTR ERVL 0 795 711 279 0 0 0 chr4 55479030 55479061 -128809601 + (TA)n Simple_repeat Simple_repeat 1 31 0 360 338 0 14 chr4 55479120 55479262 -128809400 - LTR41 LTR ERVL -620 153 14 407 230 87 76 chr4 55479269 55479456 -128809206 - MLT1K LTR MaLR -350 238 35 310 236 9 64 chr4 55529662 55529772 -128758890 - L1ME3A LINE L1 -21 6149 6046 2205 98 3 7 chr4 55529778 55530073 -128758589 + AluSx SINE Alu 1 294 -18 340 231 44 0 chr4 55530077 55530161 -128758501 + FLAM_A SINE Alu 39 115 -18 185 0 0 39 chr4 55530164 55530190 -128758472 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 898 238 78 14 chr4 55530208 55530489 -128758173 - L1ME3A LINE L1 -166 6004 5706 316 180 0 0 chr4 55530662 55530723 -128757939 + MER106B DNA MER1_type 966 1026 -33 1764 132 103 3 chr4 55530732 55531073 -128757589 + MLT1B LTR MaLR 16 390 0 514 335 158 8 chr4 55531308 55531574 -128757088 + L2 LINE L2 2921 3226 -46 1993 103 89 23 chr4 55531801 55532151 -128756511 - THE1C LTR MaLR -2 373 1 1917 158 0 0 chr4 55532713 55533011 -128755651 + AluJb SINE Alu 1 298 -14 222 308 81 96 chr4 55533861 55534121 -128754541 - L2 LINE L2 -50 3222 2967 282 77 39 0 chr4 55534240 55534292 -128754370 - L1MA5A LINE L1 -5 6292 6239 1987 147 0 29 chr4 55534552 55534859 -128753803 - AluJo SINE Alu -13 299 2 1872 173 6 16 chr4 55535579 55535891 -128752771 - AluSx SINE Alu -2 310 2 679 174 0 0 chr4 55536226 55536341 -128752321 + FLAM_A SINE Alu 25 139 -3 768 159 0 8 chr4 55537172 55537298 -128751364 - FLAM_C SINE Alu -18 125 1 782 312 126 29 chr4 55537741 55537834 -128750828 - L2 LINE L2 -3 3310 3227 2181 124 3 0 chr4 55537834 55538125 -128750537 + AluSx SINE Alu 1 292 -20 782 312 126 29 chr4 55538125 55538742 -128749920 - L2 LINE L2 -86 3227 2489 7240 159 15 6 chr4 55538843 55540610 -128748052 + L1MA4 LINE L1 3901 5688 -612 2244 175 53 8 chr4 55540614 55541106 -128747556 + L1MA4 LINE L1 5780 6293 -7 180 0 0 0 chr4 55541118 55541138 -128747524 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 6149 188 42 37 chr4 55541256 55541757 -128746905 - L1 LINE L1 -2440 3888 3391 2195 81 0 65 chr4 55541757 55542080 -128746582 - AluY SINE Alu -9 302 1 6149 188 42 37 chr4 55542080 55542281 -128746381 - L1 LINE L1 -2937 3391 3193 1943 174 3 0 chr4 55542281 55542592 -128746070 - AluJb SINE Alu 0 312 1 6149 188 42 37 chr4 55542592 55543735 -128744927 - L1 LINE L1 -3135 3193 2026 1543 190 69 3 chr4 55543735 55544025 -128744637 + AluJo SINE Alu 1 309 -3 6149 188 42 37 chr4 55544025 55545041 -128743621 - L1 LINE L1 -4302 2026 1017 1004 161 0 7 chr4 55545043 55545198 -128743464 + AluJb SINE Alu 136 289 -23 2819 151 35 26 chr4 55545211 55545455 -128743207 - L1 LINE L1 -4301 1027 787 2333 119 0 0 chr4 55545455 55545767 -128742895 - AluSx SINE Alu 0 312 1 2819 151 35 26 chr4 55545767 55546098 -128742564 - L1 LINE L1 -4541 787 447 2527 187 21 2 chr4 55546205 55546682 -128741980 - L1 LINE L1 -4842 486 1 228 326 74 0 chr4 55547206 55547301 -128741361 + L2 LINE L2 2397 2498 -816 1400 165 0 16 chr4 55547616 55547858 -128740804 - AluJb SINE Alu -11 301 64 2214 60 4 7 chr4 55547867 55548181 -128740481 - AluY SINE Alu 0 313 1 2225 87 6 42 chr4 55548787 55549098 -128739564 + AluSx SINE Alu 1 300 -12 1778 175 3 7 chr4 55549671 55549957 -128738705 + AluJo SINE Alu 1 285 -27 22 35 0 0 chr4 55550057 55550086 -128738576 + AT_rich Low_complexity Low_complexity 1 29 0 1244 164 95 33 chr4 55550809 55551030 -128737632 + MER33 DNA MER1_type 1 248 -2337 1603 176 6 43 chr4 55551030 55551353 -128737309 - AluJo SINE Alu -1 311 1 1244 164 95 33 chr4 55551353 55551435 -128737227 + MER33 DNA MER1_type 248 323 -1 305 226 53 158 chr4 55551452 55551642 -128737020 + MIR SINE MIR 23 192 -70 1853 110 0 94 chr4 55552862 55553171 -128735491 - AluSx SINE Alu -6 306 27 1368 164 0 0 chr4 55553527 55553734 -128734928 + AluJb SINE Alu 15 221 -91 3851 219 87 151 chr4 55553739 55554874 -128733788 - L2 LINE L2 -108 3205 1999 306 164 0 9 chr4 55554874 55555091 -128733571 + AluJb SINE Alu 1 298 -4 3851 219 87 151 chr4 55555091 55555834 -128732828 - L2 LINE L2 -1314 1999 1206 730 22 0 0 chr4 55555834 55555923 -128732739 + 5S rRNA rRNA 2 90 -31 3851 219 87 151 chr4 55555923 55556253 -128732409 - L2 LINE L2 -2107 1206 857 2006 125 11 4 chr4 55556843 55557151 -128731511 - AluSx SINE Alu 0 310 1 606 126 18 0 chr4 55557249 55557360 -128731302 - L1MB4 LINE L1 -1 6179 6067 3844 155 34 15 chr4 55557364 55558383 -128730279 - L1MB4 LINE L1 -212 5971 4932 1804 193 15 13 chr4 55558618 55559011 -128729651 + MLT1C LTR MaLR 74 467 0 4631 204 70 73 chr4 55559011 55559542 -128729120 + MLT1C-int LTR MaLR 1 532 -839 1565 141 56 100 chr4 55559542 55559861 -128728801 + AluJb SINE Alu 1 305 -7 4631 204 70 73 chr4 55559861 55560702 -128727960 + MLT1C-int LTR MaLR 532 1369 -2 1989 200 24 13 chr4 55560704 55561155 -128727507 + MLT1C LTR MaLR 12 467 0 1734 156 11 11 chr4 55561478 55561760 -128726902 - AluJo SINE Alu -20 292 11 33 94 0 0 chr4 55561901 55561997 -128726665 + AT_rich Low_complexity Low_complexity 1 96 0 1838 139 3 61 chr4 55562765 55563075 -128725587 - AluSx SINE Alu -20 292 1 1986 128 0 10 chr4 55563604 55563893 -128724769 + AluSx SINE Alu 1 286 -26 195 254 103 48 chr4 55564065 55564191 -128724471 - L2 LINE L2 -1293 2021 1889 309 263 42 42 chr4 55564380 55564475 -128724187 + L2 LINE L2 3178 3272 0 180 365 0 0 chr4 55564908 55564971 -128723691 + L2 LINE L2 3246 3308 -5 226 301 151 27 chr4 55565266 55565339 -128723323 - MIR SINE MIR -168 94 13 1785 171 7 16 chr4 55565693 55566003 -128722659 + AluJb SINE Alu 1 307 -5 620 167 79 143 chr4 55566276 55566528 -128722134 + MER106A DNA MER1_type 1 236 0 1357 170 120 8 chr4 55566764 55567023 -128721639 + AluJo SINE Alu 1 288 -14 255 213 0 0 chr4 55567029 55567076 -128721586 + FRAM/FAM SINE Alu 1 39 -127 1431 132 5 0 chr4 55567176 55567380 -128721282 - AluSx SINE Alu -107 205 1 1537 207 0 16 chr4 55568167 55568287 -128720375 + AluJb SINE Alu 1 121 -191 245 29 29 0 chr4 55568287 55568321 -128720341 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1537 207 0 16 chr4 55568321 55568504 -128720158 + AluJb SINE Alu 121 299 -13 2217 127 0 0 chr4 55568695 55568995 -128719667 - AluSx SINE Alu -12 300 1 245 281 143 29 chr4 55569416 55569626 -128719036 - L2 LINE L2 -213 3059 2826 2505 132 3 19 chr4 55569670 55570040 -128718622 + MLT1A1 LTR MaLR 2 365 0 208 308 85 23 chr4 55570110 55570193 -128718469 + MIR3 SINE MIR 31 126 -82 1879 140 3 14 chr4 55570193 55570485 -128718177 - AluJb SINE Alu -23 289 1 208 308 85 23 chr4 55570485 55570531 -128718131 + MIR3 SINE MIR 126 168 -40 396 213 153 102 chr4 55570567 55570783 -128717879 - L2 LINE L2 -34 3279 3053 21 0 0 0 chr4 55571207 55571228 -128717434 + AT_rich Low_complexity Low_complexity 1 21 0 275 143 0 18 chr4 55572064 55572120 -128716542 + (GGAA)n Simple_repeat Simple_repeat 3 57 0 959 188 6 0 chr4 55572211 55572371 -128716291 - AluJb SINE Alu -18 294 134 3625 192 64 23 chr4 55572376 55573326 -128715336 - L1MB2 LINE L1 -2 6169 5180 2280 114 0 10 chr4 55574090 55574398 -128714264 - AluSx SINE Alu -6 306 2 2551 175 6 17 chr4 55574674 55575154 -128713508 - L1MB4 LINE L1 0 6180 5706 896 187 13 0 chr4 55575403 55575600 -128713062 + FRAM SINE Alu 1 192 0 29 47 0 0 chr4 55576076 55576119 -128712543 + AT_rich Low_complexity Low_complexity 1 43 0 2108 106 0 0 chr4 55576698 55576971 -128711691 - AluSx SINE Alu -39 273 1 1516 277 123 24 chr4 55577011 55577904 -128710758 - L2 LINE L2 -2 3311 2336 1556 218 156 46 chr4 55577906 55578361 -128710301 + MLT1C LTR MaLR 1 467 0 602 314 55 8 chr4 55578361 55578597 -128710065 - L2 LINE L2 -983 2331 2085 2369 46 42 0 chr4 55579397 55579682 -128708980 - AluY SINE Alu -14 297 1 234 62 0 0 chr4 55580550 55580582 -128708080 + (CCCTA)n Simple_repeat Simple_repeat 1 32 0 2002 134 0 7 chr4 55580744 55581034 -128707628 + AluJb SINE Alu 1 288 -24 218 328 0 0 chr4 55581308 55581375 -128707287 + CT-rich Low_complexity Low_complexity 2 68 0 325 319 17 26 chr4 55582465 55582581 -128706081 + MIR SINE MIR 23 137 -71 955 234 29 5 chr4 55582584 55582793 -128705869 - MER58C DNA MER1_type -1 214 1 811 209 7 20 chr4 55583327 55583495 -128705167 - AluJb SINE Alu 0 302 137 2219 112 0 3 chr4 55584061 55584364 -128704298 - AluSx SINE Alu -10 302 1 376 293 128 57 chr4 55584486 55584995 -128703667 + L2 LINE L2 2029 2573 -741 1052 130 5 49 chr4 55585180 55585194 -128703468 - AluSg/x SINE Alu 0 310 297 1125 119 72 31 chr4 55585194 55585387 -128703275 - L1PA15 LINE L1 0 6165 5965 1052 130 5 49 chr4 55585387 55585556 -128703106 - AluSg/x SINE Alu -13 297 135 182 281 98 12 chr4 55585663 55585745 -128702917 + MIR SINE MIR 69 157 -105 1997 111 10 27 chr4 55585779 55586076 -128702586 - AluSx SINE Alu -20 292 1 2272 92 7 3 chr4 55586561 55586864 -128701798 - AluSp SINE Alu -9 304 1 229 346 10 10 chr4 55587050 55587154 -128701508 - L2 LINE L2 -1 3271 3168 23 0 0 0 chr4 55587196 55587219 -128701443 + AT_rich Low_complexity Low_complexity 1 23 0 2014 136 11 0 chr4 55587460 55587746 -128700916 - AluJb SINE Alu -23 289 1 280 170 0 19 chr4 55588017 55588070 -128700592 + MLT1K LTR MaLR 510 561 -27 1303 217 25 32 chr4 55588092 55588406 -128700256 - AluJo SINE Alu 0 312 1 401 252 90 0 chr4 55588874 55588985 -128699677 - L2 LINE L2 0 3313 3193 244 235 0 0 chr4 55588987 55589038 -128699624 + AluJ/FLAM SINE Alu 36 86 -216 394 193 12 12 chr4 55589140 55589223 -128699439 - L1ME LINE L1 -530 5640 5558 979 212 31 0 chr4 55589768 55589961 -128698701 + MER58A DNA MER1_type 5 203 -21 812 206 50 0 chr4 55589958 55590118 -128698544 - Charlie1 DNA MER1_type -2593 168 1 * 216 0 0 0 chr4 55590173 55590197 -128698465 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 885 133 14 14 chr4 55590199 55590342 -128698320 - FRAM SINE Alu -30 146 4 2608 177 113 16 chr4 55590342 55590908 -128697754 - L1MB5 LINE L1 -96 6078 5458 3708 198 40 17 chr4 55591302 55592020 -128696642 - MER21B LTR ERV1 -113 750 16 3358 118 64 15 chr4 55592020 55592820 -128695842 - Tigger3(Golem) DNA MER2_type -1 3028 274 590 210 0 0 chr4 55592818 55592918 -128695744 - Tigger3(Golem) DNA MER2_type -2927 102 3 * 189 0 0 0 chr4 55592934 55592955 -128695707 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1834 134 7 14 chr4 55592971 55593248 -128695414 - AluJo SINE Alu -37 275 1 1500 181 55 15 chr4 55593354 55593653 -128695009 + AluJb SINE Alu 1 310 0 2283 116 0 0 chr4 55594656 55594959 -128693703 + AluSx SINE Alu 1 303 -9 216 0 0 0 chr4 55595341 55595365 -128693297 + (TG)n Simple_repeat Simple_repeat 2 25 0 30 27 0 0 chr4 55595572 55595609 -128693053 + AT_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr4 55595655 55595691 -128692971 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr4 55595795 55595816 -128692846 + AT_rich Low_complexity Low_complexity 1 21 0 308 307 40 33 chr4 55596154 55596304 -128692358 + L2 LINE L2 545 695 -2619 333 311 0 19 chr4 55596313 55596416 -128692246 + MER5B DNA MER1_type 1 101 -77 2729 117 67 7 chr4 55596454 55596889 -128691773 - L1MA5A LINE L1 -10 6287 5827 376 188 0 14 chr4 55596974 55597043 -128691619 + MER112 DNA MER1_type 193 260 0 870 276 286 51 chr4 55597055 55597207 -128691455 + L2 LINE L2 835 950 -2364 2289 109 0 6 chr4 55597207 55597518 -128691144 - AluSc SINE Alu 0 309 1 870 276 286 51 chr4 55597518 55597960 -128690702 + L2 LINE L2 950 1287 -2027 1870 138 20 23 chr4 55597960 55598265 -128690397 + AluJo SINE Alu 2 305 -7 870 276 286 51 chr4 55598265 55598605 -128690057 + L2 LINE L2 1287 1546 -1768 2221 125 0 0 chr4 55598605 55598916 -128689746 + AluSq SINE Alu 1 311 -2 2208 123 3 7 chr4 55598917 55599226 -128689436 + AluSx SINE Alu 1 308 -4 870 276 286 51 chr4 55599226 55599343 -128689319 + L2 LINE L2 1546 1634 -1680 486 162 81 0 chr4 55599343 55599454 -128689208 - L1MB2 LINE L1 -1 6170 6051 870 276 286 51 chr4 55599454 55599570 -128689092 + L2 LINE L2 1634 1721 -1593 1840 128 62 59 chr4 55599570 55599944 -128688718 - THE1C LTR MaLR 0 375 1 870 276 286 51 chr4 55599944 55599967 -128688695 + L2 LINE L2 1721 2313 -1001 2135 156 56 8 chr4 55600010 55600383 -128688279 - MSTA LTR MaLR 0 428 38 3045 237 37 34 chr4 55600388 55600827 -128687835 - HERVL40 LTR ERVL -79 5451 5008 2184 126 3 0 chr4 55600827 55601128 -128687534 + AluSq SINE Alu 3 304 -9 3045 237 37 34 chr4 55601128 55601502 -128687160 - HERVL40 LTR ERVL -522 5008 4636 1237 209 48 60 chr4 55601508 55601824 -128686838 - HERVL40 LTR ERVL -3053 2477 2166 1843 166 3 3 chr4 55601857 55602146 -128686516 + AluSx SINE Alu 1 289 -23 1652 153 41 8 chr4 55602147 55602415 -128686247 - AluJo SINE Alu -35 277 1 567 155 129 9 chr4 55602415 55602531 -128686131 - HERVL40 LTR ERVL -3351 2179 2050 490 200 92 15 chr4 55602530 55602660 -128686002 - HERVL40 LTR ERVL -3913 1617 1478 * 1040 239 158 73 chr4 55602760 55603092 -128685570 - HERVL40 LTR ERVL -4072 1458 1069 1662 173 21 14 chr4 55603092 55603260 -128685402 - AluJb SINE Alu -21 291 119 225 0 0 0 chr4 55603260 55603285 -128685377 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1662 173 21 14 chr4 55603285 55603405 -128685257 - AluJb SINE Alu -193 119 1 1040 239 158 73 chr4 55603405 55603565 -128685097 - HERVL40 LTR ERVL -4461 1069 924 1711 228 102 32 chr4 55603839 55604300 -128684362 - LTR40a LTR ERVL -1 518 26 754 107 49 0 chr4 55604335 55604457 -128684205 - L1MB4 LINE L1 0 6180 6053 357 277 69 48 chr4 55604466 55604654 -128684008 - L1 LINE L1 -2367 4481 4290 837 166 6 11 chr4 55604928 55605109 -128683553 + CT-rich Low_complexity Low_complexity 1 180 0 403 247 0 0 chr4 55605109 55605186 -128683476 + polypyrimidine Low_complexity Low_complexity 1 77 0 1816 142 35 10 chr4 55605186 55605475 -128683187 - AluJo SINE Alu -16 296 1 385 271 115 24 chr4 55605491 55605786 -128682876 - L1 LINE L1 -2929 3919 3598 404 269 46 15 chr4 55605788 55605842 -128682820 + MER94 DNA DNA 1 52 -82 2002 143 57 27 chr4 55605842 55606178 -128682484 - MER7A DNA MER2_type 0 346 3 404 269 46 15 chr4 55606178 55606253 -128682409 + MER94 DNA DNA 52 134 0 326 354 56 6 chr4 55606313 55606474 -128682188 - L1 LINE L1 -3316 3532 3364 938 122 54 0 chr4 55606498 55606645 -128682017 - FRAM SINE Alu 0 40 1 1654 160 167 3 chr4 55606793 55607105 -128681557 - MER47A DNA MER2_type -3 363 1 234 272 12 25 chr4 55607257 55607338 -128681324 - L1 LINE L1 -3667 3181 3102 2912 170 50 32 chr4 55607397 55607549 -128681113 - L1MB8 LINE L1 0 6178 6030 1860 148 7 7 chr4 55607549 55607852 -128680810 + AluJb SINE Alu 1 303 -9 2912 170 50 32 chr4 55607852 55608889 -128679773 - L1MB8 LINE L1 -148 6030 4918 1138 153 18 31 chr4 55609138 55609360 -128679302 - MER20 DNA MER1_type 0 219 1 261 0 0 0 chr4 55609457 55609486 -128679176 + (T)n Simple_repeat Simple_repeat 1 29 0 2484 73 0 0 chr4 55609960 55610263 -128678399 - AluSp SINE Alu -10 303 1 1663 70 18 31 chr4 55610544 55610772 -128677890 + AluSq SINE Alu 89 313 0 415 256 168 88 chr4 55611504 55612238 -128676424 - L1 LINE L1 -5443 1406 180 378 0 0 0 chr4 55612847 55612889 -128675773 + (TG)n Simple_repeat Simple_repeat 2 43 0 183 261 0 0 chr4 55613735 55613781 -128674881 + L2 LINE L2 3268 3313 0 304 247 0 26 chr4 55613838 55613915 -128674747 - L2 LINE L2 -5 3267 3193 319 283 54 42 chr4 55614062 55614232 -128674430 - MIR SINE MIR -63 145 9 709 274 84 0 chr4 55614359 55614574 -128674088 + MIR SINE MIR 13 245 -17 803 139 108 16 chr4 55614633 55614762 -128673900 - FLAM_C SINE Alu -1 142 2 850 220 61 9 chr4 55614779 55614993 -128673669 + MER112 DNA MER1_type 32 256 -4 579 281 34 53 chr4 55615131 55615394 -128673268 - MIR SINE MIR -3 259 2 21 0 0 0 chr4 55616021 55616042 -128672620 + AT_rich Low_complexity Low_complexity 1 21 0 221 171 0 0 chr4 55616860 55616901 -128671761 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1688 141 19 19 chr4 55616903 55617172 -128671490 - AluJo SINE Alu -35 277 9 275 180 0 0 chr4 55619138 55619188 -128669474 + MER33 DNA MER1_type 55 104 -220 570 120 194 0 chr4 55619188 55619296 -128669366 + AluJ SINE Alu 1 129 -173 661 187 32 0 chr4 55619318 55619441 -128669221 + AluJ SINE Alu 105 231 -81 261 0 0 0 chr4 55619448 55619477 -128669185 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 753 153 0 8 chr4 55619491 55619609 -128669053 + AluJb SINE Alu 2 118 -194 814 162 38 64 chr4 55619630 55619865 -128668797 + MER33 DNA MER1_type 96 324 0 298 143 89 0 chr4 55619866 55619922 -128668740 - MIR3 SINE MIR -49 159 99 1163 123 28 6 chr4 55620325 55620504 -128668158 - AluSg/x SINE Alu -9 301 119 1876 54 0 21 chr4 55620504 55620744 -128667918 - AluY SINE Alu 0 311 77 1893 111 61 14 chr4 55621528 55621808 -128666854 - AluSx SINE Alu -19 293 1 2107 103 0 7 chr4 55622790 55623071 -128665591 + AluSg SINE Alu 1 279 -31 2045 160 60 5 chr4 55623340 55623708 -128664954 + MLT1B LTR MaLR 1 388 -2 219 308 15 0 chr4 55623886 55623951 -128664711 - MIR3 SINE MIR -14 194 129 186 43 0 0 chr4 55624086 55624109 -128664553 + (TTG)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr4 55624179 55624200 -128664462 + AT_rich Low_complexity Low_complexity 1 21 0 2404 93 7 0 chr4 55624311 55624613 -128664049 + AluSx SINE Alu 1 304 -8 729 294 60 19 chr4 55624678 55625088 -128663574 - L1ME3 LINE L1 -265 5905 5479 284 267 185 15 chr4 55625188 55625323 -128663339 - MIR3 SINE MIR -21 187 30 517 308 159 34 chr4 55625579 55625962 -128662700 + L2 LINE L2 2842 3272 0 592 196 0 0 chr4 55626150 55626252 -128662410 + AluJ/FLAM SINE Alu 1 102 -210 1980 129 28 3 chr4 55626617 55626904 -128661758 - AluSq SINE Alu -19 294 1 1767 171 10 7 chr4 55626951 55627255 -128661407 + AluJo SINE Alu 7 311 -1 2547 60 0 0 chr4 55627516 55627815 -128660847 + AluY SINE Alu 1 299 -12 1648 179 0 0 chr4 55628047 55628321 -128660341 + AluJb SINE Alu 1 274 -38 1465 192 0 42 chr4 55629800 55630112 -128658550 - AluJo SINE Alu -13 299 1 493 263 154 11 chr4 55630113 55630288 -128658374 + MIR SINE MIR 63 262 0 2102 188 63 25 chr4 55631018 55631285 -128657377 + L1MD3 LINE L1 7409 7664 -331 3997 182 34 47 chr4 55631285 55632251 -128656411 - LTR13 LTR ERVK 0 954 1 2102 188 63 25 chr4 55632251 55632535 -128656127 + L1MD3 LINE L1 7664 7981 -14 2980 219 75 88 chr4 55632585 55633434 -128655228 + HAL1 LINE L1 1112 1936 -571 2117 130 0 0 chr4 55633434 55633727 -128654935 - AluSx SINE Alu -19 293 1 2980 219 75 88 chr4 55633727 55634280 -128654382 + HAL1 LINE L1 1936 2495 -12 1738 99 114 23 chr4 55634385 55634648 -128654014 - AluSx SINE Alu -25 287 1 3152 170 97 26 chr4 55634991 55635716 -128652946 - LTR39 LTR ERV1 -7 776 1 199 336 117 7 chr4 55636481 55636618 -128652044 + L2 LINE L2 3120 3271 -42 22 0 0 0 chr4 55636820 55636842 -128651820 + AT_rich Low_complexity Low_complexity 1 22 0 490 257 41 23 chr4 55636844 55637015 -128651647 - MLT1J LTR MaLR -3 508 335 352 239 15 85 chr4 55637172 55637302 -128651360 - MLT1J LTR MaLR -280 231 111 514 201 45 126 chr4 55637451 55637720 -128650942 - MER112 DNA MER1_type -13 247 1 236 197 45 30 chr4 55638172 55638238 -128650424 + MIR SINE MIR 84 150 -112 264 291 48 29 chr4 55638363 55638466 -128650196 - MIR3 SINE MIR -3 205 101 2093 106 3 0 chr4 55639528 55639838 -128648824 - AluSx SINE Alu 0 311 1 2440 68 0 10 chr4 55639841 55640151 -128648511 - AluY SINE Alu -4 307 1 1653 124 8 91 chr4 55640184 55640546 -128648116 + L1MB3 LINE L1 5851 6182 -1 2248 100 0 3 chr4 55640590 55640889 -128647773 - AluSx SINE Alu -14 298 1 255 264 0 0 chr4 55641036 55641089 -128647573 - MIR3 SINE MIR -24 184 132 634 203 25 8 chr4 55641448 55641566 -128647096 + FLAM_A SINE Alu 1 120 -13 26 0 0 0 chr4 55641566 55641592 -128647070 + AT_rich Low_complexity Low_complexity 1 26 0 395 309 0 0 chr4 55641902 55642012 -128646650 - MIR SINE MIR -1 261 152 191 129 0 0 chr4 55642008 55642039 -128646623 - MIR SINE MIR -220 42 12 * 2027 131 7 13 chr4 55642160 55642465 -128646197 - AluJb SINE Alu -9 303 1 432 361 52 15 chr4 55642491 55642821 -128645841 + L2 LINE L2 2185 2526 -788 236 223 78 97 chr4 55643130 55643233 -128645429 + L2 LINE L2 3172 3272 0 21 0 0 0 chr4 55643244 55643265 -128645397 + AT_rich Low_complexity Low_complexity 1 21 0 2318 196 111 26 chr4 55643870 55644254 -128644408 - MER97a DNA MER1_type? 0 894 544 1711 122 0 0 chr4 55644254 55644484 -128644178 + AluSg SINE Alu 61 290 -20 2318 196 111 26 chr4 55644484 55644859 -128643803 - MER97a DNA MER1_type? -350 544 71 1083 163 6 0 chr4 55644860 55645026 -128643636 + FAM SINE Alu 3 169 -16 233 256 0 61 chr4 55645141 55645223 -128643439 + A-rich Low_complexity Low_complexity 2 78 0 344 256 12 0 chr4 55645244 55645326 -128643336 - MER97b DNA MER1_type? -970 83 1 371 209 0 0 chr4 55645964 55646031 -128642631 - MIR SINE MIR 0 262 196 1274 211 27 32 chr4 55646043 55646418 -128642244 - MLT1A2 LTR MaLR 0 467 3 593 286 25 6 chr4 55646419 55646580 -128642082 - MIR SINE MIR -98 164 1 2249 103 0 0 chr4 55646768 55647058 -128641604 - AluSx SINE Alu -22 290 1 1453 200 39 66 chr4 55647066 55647580 -128641082 - L1MC5 LINE L1 -36 7925 7426 1639 191 10 112 chr4 55647938 55648237 -128640425 - L1MC4 LINE L1 -751 7291 6963 1638 173 7 30 chr4 55648237 55648537 -128640125 - AluJb SINE Alu -19 293 1 1639 191 10 112 chr4 55648537 55648579 -128640083 - L1MC4 LINE L1 -1079 6963 6918 2387 94 16 0 chr4 55648579 55648887 -128639775 - AluSq SINE Alu 0 313 1 1639 191 10 112 chr4 55648887 55649145 -128639517 - L1MC4 LINE L1 -1124 6918 6752 243 246 0 33 chr4 55649612 55649673 -128638989 - MIR3 SINE MIR -54 154 96 1340 167 61 95 chr4 55649767 55650145 -128638517 + MLT1A1 LTR MaLR 1 365 0 360 211 0 0 chr4 55651475 55651551 -128637111 + FLAM_A SINE Alu 35 110 -23 39 0 0 0 chr4 55651869 55651908 -128636754 + AT_rich Low_complexity Low_complexity 1 39 0 1661 167 36 0 chr4 55651911 55652186 -128636476 - AluJo SINE Alu -27 285 1 409 328 112 24 chr4 55652467 55652717 -128635945 - L2 LINE L2 -9 3263 2992 1780 171 36 0 chr4 55652812 55653092 -128635570 + AluJb SINE Alu 1 290 -22 22 0 0 0 chr4 55653211 55653233 -128635429 + AT_rich Low_complexity Low_complexity 1 22 0 196 169 0 46 chr4 55653645 55653710 -128634952 + CT-rich Low_complexity Low_complexity 3 64 0 186 221 23 81 chr4 55653747 55653833 -128634829 + MIR SINE MIR 98 178 -84 229 290 108 21 chr4 55654044 55654137 -128634525 + MIR SINE MIR 96 196 -66 1676 163 42 14 chr4 55654871 55655160 -128633502 - AluJb SINE Alu -15 297 1 1571 164 23 15 chr4 55655165 55655427 -128633235 - AluJb SINE Alu -16 296 33 24 32 0 0 chr4 55655980 55656011 -128632651 + AT_rich Low_complexity Low_complexity 1 31 0 326 333 68 14 chr4 55656342 55656489 -128632173 - L2 LINE L2 -2 3270 3116 1892 149 10 3 chr4 55656740 55657041 -128631621 + AluJb SINE Alu 1 303 -9 2131 113 3 13 chr4 55657822 55658123 -128630539 + AluSg1 SINE Alu 1 298 -11 278 247 0 0 chr4 55658548 55658633 -128630029 - L1MA10 LINE L1 -11 6323 6239 3081 214 57 16 chr4 55658670 55659920 -128628742 - L1ME1 LINE L1 -92 6074 4772 324 130 0 0 chr4 55659921 55659967 -128628695 - Tigger3(Golem) DNA MER2_type -2907 122 77 619 183 0 9 chr4 55660002 55660117 -128628545 + AluJb SINE Alu 194 307 -5 549 133 0 0 chr4 55660117 55660200 -128628462 - Tigger3(Golem) DNA MER2_type -2943 86 4 307 183 0 98 chr4 55660207 55660289 -128628373 + L1MEc LINE L1 1864 1937 -4459 548 241 36 12 chr4 55660293 55660459 -128628203 - L1MEc LINE L1 -6182 214 45 995 142 0 0 chr4 55660532 55660697 -128627965 + FRAM SINE Alu 6 170 0 2104 158 0 3 chr4 55661002 55661312 -128627350 + AluSx SINE Alu 1 309 -3 293 155 17 0 chr4 55662126 55662184 -128626478 + CT-rich Low_complexity Low_complexity 2 60 0 22 35 0 0 chr4 55662624 55662653 -128626009 + AT_rich Low_complexity Low_complexity 1 29 0 432 326 72 9 chr4 55663517 55663738 -128624924 + L2 LINE L2 936 1170 -2144 956 193 0 18 chr4 55664268 55664434 -128624228 + AluJb SINE Alu 134 296 -16 1739 182 16 3 chr4 55664599 55664907 -128623755 - AluJb SINE Alu 0 312 1 363 255 177 32 chr4 55664933 55665278 -128623384 - L1ME4a LINE L1 -11 6110 5716 425 359 42 39 chr4 55665639 55666049 -128622613 - L1ME4a LINE L1 -1179 4967 4557 537 359 59 39 chr4 55666684 55667373 -128621289 - L2 LINE L2 0 3272 2577 2126 133 7 0 chr4 55667558 55667866 -128620796 - AluSx SINE Alu -2 310 1 1334 166 5 0 chr4 55667866 55668000 -128620662 - AluSx SINE Alu -177 135 1 407 258 58 26 chr4 55668227 55668382 -128620280 + MER103 DNA DNA 4 163 -3 586 267 48 31 chr4 55668434 55668518 -128620144 - L1ME4a LINE L1 -2932 3214 3133 1839 154 0 38 chr4 55668518 55668836 -128619826 - AluJb SINE Alu -6 306 1 586 267 48 31 chr4 55668836 55669103 -128619559 - L1ME4a LINE L1 -3013 3133 2857 1216 44 0 2 chr4 55669289 55669492 -128619170 - L1PA3 LINE L1 0 6155 5995 22 35 0 0 chr4 55669504 55669533 -128619129 + AT_rich Low_complexity Low_complexity 1 29 0 1474 134 0 28 chr4 55669594 55669609 -128619053 - L1M4 LINE L1 -482 5702 5688 1869 136 33 53 chr4 55669609 55669711 -128618951 - L1MB8 LINE L1 0 6178 6076 3774 117 24 6 chr4 55669711 55670257 -128618405 - LTR38 LTR ERV1 0 556 1 1869 136 33 53 chr4 55670257 55670515 -128618147 - L1MB8 LINE L1 -102 6076 5825 1474 134 0 28 chr4 55670515 55670746 -128617916 - L1M4 LINE L1 -496 5688 5463 1725 149 49 72 chr4 55670746 55671134 -128617528 + MLT1B LTR MaLR 1 379 -11 471 146 83 111 chr4 55671137 55671177 -128617485 - L1M4 LINE L1 -702 5472 5432 1720 156 3 52 chr4 55671177 55671503 -128617159 - AluJo SINE Alu 0 312 3 471 146 83 111 chr4 55671503 55671659 -128617003 - L1M4 LINE L1 -742 5432 5262 2359 82 0 23 chr4 55671722 55672028 -128616634 - AluSq SINE Alu -14 299 1 399 229 33 33 chr4 55673140 55673262 -128615400 + MIR SINE MIR 117 238 -24 1290 260 116 61 chr4 55673284 55673912 -128614750 - L1ME3A LINE L1 0 6170 5508 1994 124 0 10 chr4 55673921 55674211 -128614451 - AluSx SINE Alu -24 288 2 236 189 38 0 chr4 55674309 55674362 -128614300 - L1MD3 LINE L1 -12 7983 7929 * 2005 242 57 20 chr4 55674355 55674919 -128613743 - L1MC4 LINE L1 -131 7911 7322 2416 65 0 26 chr4 55674919 55675229 -128613433 - AluY SINE Alu -9 302 1 2005 242 57 20 chr4 55675229 55675263 -128613399 - L1MC4 LINE L1 -720 7322 7291 1130 170 5 34 chr4 55675264 55675470 -128613192 + AluJo SINE Alu 1 200 -112 748 127 0 9 chr4 55675519 55675629 -128613033 + AluJo SINE Alu 191 299 -13 384 227 36 9 chr4 55675639 55675749 -128612913 - L1MC4 LINE L1 -1064 6978 6866 586 320 129 50 chr4 55675783 55675909 -128612753 + L2 LINE L2 2236 2351 -963 2139 118 3 3 chr4 55675909 55676205 -128612457 + AluSx SINE Alu 1 296 -16 586 320 129 50 chr4 55676205 55676737 -128611925 + L2 LINE L2 2351 2946 -368 1710 160 7 7 chr4 55677095 55677388 -128611274 + AluJb SINE Alu 1 293 -19 180 0 0 0 chr4 55677941 55677961 -128610701 + (CAT)n Simple_repeat Simple_repeat 2 21 0 858 296 59 23 chr4 55677978 55678312 -128610350 - MLT1I LTR MaLR -22 387 66 616 194 78 0 chr4 55678411 55678540 -128610122 - MIR SINE MIR -10 252 114 2064 118 10 3 chr4 55678884 55679172 -128609490 - AluSx SINE Alu -22 290 1 261 270 261 0 chr4 55679305 55679428 -128609234 + MIR SINE MIR 41 191 -63 811 263 35 0 chr4 55679590 55679788 -128608874 + MIR SINE MIR 13 217 -45 506 195 32 49 chr4 55679807 55679930 -128608732 + L2 LINE L2 3188 3308 -5 845 116 0 0 chr4 55680116 55680228 -128608434 + FLAM_C SINE Alu 21 132 -11 180 398 48 19 chr4 55680249 55680352 -128608310 + L2 LINE L2 3149 3254 -18 22 56 0 0 chr4 55681281 55681317 -128607345 + AT_rich Low_complexity Low_complexity 1 36 0 2293 73 10 10 chr4 55682279 55682581 -128606081 + AluY SINE Alu 1 302 -9 31 44 0 0 chr4 55682656 55682701 -128605961 + AT_rich Low_complexity Low_complexity 1 45 0 2407 63 7 0 chr4 55682701 55682988 -128605674 - AluSp SINE Alu -24 289 1 2046 141 7 3 chr4 55683093 55683391 -128605271 - AluSx SINE Alu -13 299 1 235 271 84 19 chr4 55683522 55683629 -128605033 + MIR SINE MIR 51 164 -98 2007 145 0 26 chr4 55684361 55684665 -128603997 - AluSx SINE Alu -16 296 1 2095 92 0 0 chr4 55684673 55684935 -128603727 - AluSx SINE Alu -16 296 35 1735 152 6 58 chr4 55685083 55685412 -128603250 - AluJo SINE Alu 0 312 1 240 302 28 67 chr4 55685573 55685752 -128602910 - L2 LINE L2 -17 3296 3125 1112 217 18 5 chr4 55685756 55685973 -128602689 - MER58A DNA MER1_type -1 223 4 1973 134 10 7 chr4 55686657 55686949 -128601713 - AluSx SINE Alu -19 293 1 2519 61 0 0 chr4 55687041 55687338 -128601324 - AluY SINE Alu -14 297 1 1515 183 96 12 chr4 55687373 55687706 -128600956 + L1ME1 LINE L1 5800 6160 -6 212 250 227 0 chr4 55688147 55688235 -128600427 - L2 LINE L2 -9 3263 3156 590 253 100 12 chr4 55688258 55688428 -128600234 - MIR SINE MIR -12 250 66 1293 204 45 35 chr4 55688771 55689060 -128599602 - AluJo SINE Alu -20 292 1 585 290 54 67 chr4 55689060 55689303 -128599359 + L1ME4a LINE L1 5540 5778 -343 2104 116 24 7 chr4 55689303 55689597 -128599065 + AluSx SINE Alu 1 299 -13 585 290 54 67 chr4 55689597 55689743 -128598919 + L1ME4a LINE L1 5778 5924 -197 326 339 16 8 chr4 55689814 55689935 -128598727 - MER5A DNA MER1_type -67 122 1 271 286 29 19 chr4 55690131 55690236 -128598426 + L1MC4a LINE L1 5800 5905 -1903 1559 144 13 5 chr4 55690255 55690630 -128598032 - L1MA7 LINE L1 -11 6280 5797 1087 139 22 0 chr4 55690623 55690803 -128597859 + L1MB1 LINE L1 5709 5892 -276 * 2405 251 58 6 chr4 55690788 55691458 -128597204 - L1M4 LINE L1 -1813 4333 3629 231 226 97 0 chr4 55691480 55691542 -128597120 - L1MA7 LINE L1 -478 5813 5746 185 169 17 0 chr4 55691568 55691627 -128597035 + (TA)n Simple_repeat Simple_repeat 1 60 0 1769 144 28 3 chr4 55692411 55692695 -128595967 - AluJo SINE Alu -21 291 1 255 31 0 0 chr4 55692945 55692977 -128595685 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1653 163 21 21 chr4 55693463 55693751 -128594911 + AluJo SINE Alu 1 288 -24 182 380 0 0 chr4 55693858 55693937 -128594725 - L2 LINE L2 -667 2647 2569 862 76 15 38 chr4 55694050 55694182 -128594480 + L1PA6 LINE L1 6026 6154 0 239 327 52 20 chr4 55694422 55694575 -128594087 - L2 LINE L2 -1408 1906 1749 2397 67 0 10 chr4 55695373 55695534 -128593128 - AluSp SINE Alu -19 294 136 2268 96 3 0 chr4 55695534 55695825 -128592837 - AluSc SINE Alu -17 292 1 2397 67 0 10 chr4 55695825 55695960 -128592702 - AluSp SINE Alu -177 136 1 426 203 68 42 chr4 55696527 55696645 -128592017 - MER82 DNA MER2_type 0 653 533 1653 185 52 12 chr4 55696645 55696991 -128591671 - L1M3 LINE L1 -547 5636 5277 5503 117 54 22 chr4 55697058 55697660 -128591002 - L1MA4 LINE L1 0 6300 5656 2207 139 137 13 chr4 55697660 55698041 -128590621 - MSTA LTR MaLR 0 428 1 5503 117 54 22 chr4 55698041 55698381 -128590281 - L1MA4 LINE L1 -644 5656 5328 492 139 129 40 chr4 55698414 55698515 -128590147 - L1MA3 LINE L1 0 6305 6196 11282 168 49 5 chr4 55698515 55699332 -128589330 - L1MA4 LINE L1 -813 5333 4553 2278 95 0 23 chr4 55699332 55699637 -128589025 - AluY SINE Alu -11 300 3 11282 168 49 5 chr4 55699637 55700992 -128587670 - L1MA4 LINE L1 -1593 4553 3066 667 202 17 0 chr4 55700989 55701108 -128587554 + L1ME LINE L1 5484 5604 -560 * 239 281 24 12 chr4 55701408 55701490 -128587172 - L1ME LINE L1 -5986 84 2 411 255 0 0 chr4 55702482 55702576 -128586086 + MIR SINE MIR 47 140 -122 2164 120 3 0 chr4 55702642 55702933 -128585729 + AluSx SINE Alu 3 294 -18 2146 93 4 0 chr4 55703114 55703447 -128585215 + AluSg SINE Alu 1 334 0 436 256 105 38 chr4 55703974 55704308 -128584354 - L2 LINE L2 -104 3209 2838 2116 186 46 31 chr4 55704427 55704885 -128583777 - MLT1C LTR MaLR -2 465 1 338 275 44 0 chr4 55704910 55705001 -128583661 - MIR SINE MIR -108 154 60 1619 176 40 17 chr4 55705003 55705299 -128583363 + AluJb SINE Alu 1 303 -9 320 130 11 57 chr4 55705336 55705425 -128583237 + FLAM_A SINE Alu 19 62 -70 357 24 0 0 chr4 55705768 55705810 -128582852 + (TG)n Simple_repeat Simple_repeat 1 42 0 2106 89 7 0 chr4 55705855 55706125 -128582537 + AluSp SINE Alu 1 272 -41 225 0 0 0 chr4 55706225 55706250 -128582412 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 2216 125 0 0 chr4 55707028 55707331 -128581331 - AluSx SINE Alu -9 303 1 1652 145 10 59 chr4 55707835 55707910 -128580752 - L1MB5 LINE L1 0 6174 6097 2505 62 0 3 chr4 55707910 55708217 -128580445 - AluY SINE Alu -5 306 1 1652 145 10 59 chr4 55708217 55708445 -128580217 - L1MB5 LINE L1 -77 6097 5886 1745 162 3 23 chr4 55709740 55710043 -128578619 + AluJo SINE Alu 1 297 -15 26 0 0 0 chr4 55710626 55710652 -128578010 + AT_rich Low_complexity Low_complexity 1 26 0 250 296 56 37 chr4 55710699 55710807 -128577855 - L2 LINE L2 -1 3271 3162 498 46 0 0 chr4 55711583 55711648 -128577014 + (TC)n Simple_repeat Simple_repeat 1 65 0 234 0 0 0 chr4 55711647 55711673 -128576989 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 216 0 0 0 chr4 55711672 55711696 -128576966 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 1711 172 3 38 chr4 55711850 55712164 -128576498 + AluSq SINE Alu 1 303 -10 3453 31 0 0 chr4 55712361 55712744 -128575918 - L1PA4 LINE L1 -3 6152 5770 5864 23 3 1 chr4 55712750 55713427 -128575235 - L1PA3 LINE L1 0 6155 5508 292 227 15 0 chr4 55713458 55713524 -128575138 + MER103 DNA DNA 4 70 -96 2134 113 3 7 chr4 55713537 55713839 -128574823 - THE1-int LTR MaLR -344 1236 936 887 158 0 0 chr4 55713858 55713997 -128574665 - THE1C LTR MaLR -236 139 1 1887 153 111 145 chr4 55714092 55714615 -128574047 - MLT1D LTR MaLR 0 505 1 2205 109 0 10 chr4 55715070 55715372 -128573290 + AluSx SINE Alu 1 299 -13 242 246 66 0 chr4 55715883 55715944 -128572718 + L2 LINE L2 3148 3212 -60 2581 108 17 14 chr4 55715946 55716306 -128572356 - THE1B LTR MaLR -3 361 1 2129 180 25 19 chr4 55717432 55717793 -128570869 + MLT1A1 LTR MaLR 3 365 0 2275 82 3 0 chr4 55720645 55720937 -128567725 - AluY SINE Alu -18 293 1 24 0 0 0 chr4 55721759 55721783 -128566879 + AT_rich Low_complexity Low_complexity 1 24 0 2376 104 0 0 chr4 55722364 55722672 -128565990 + AluSg SINE Alu 3 310 0 543 168 0 0 chr4 55723645 55723740 -128564922 - L1MC1 LINE L1 0 6333 6239 535 155 43 9 chr4 55723780 55723896 -128564766 - L1MB7 LINE L1 -10 6174 6055 21 57 0 0 chr4 55723896 55723931 -128564731 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr4 55724068 55724091 -128564571 + AT_rich Low_complexity Low_complexity 1 23 0 272 303 72 7 chr4 55724815 55724967 -128563695 + L1MC/D LINE L1 5622 5783 -2025 2135 111 0 3 chr4 55725217 55725506 -128563156 - AluSx SINE Alu -23 289 2 355 219 86 9 chr4 55725723 55725828 -128562834 - L1ME4a LINE L1 -2 6119 6007 516 214 228 0 chr4 55726598 55726743 -128561919 - MER45A DNA AcHobo 0 178 1 484 363 5 47 chr4 55726946 55727136 -128561526 - MER91A DNA MER1_type -14 182 1 1444 205 111 14 chr4 55727241 55727602 -128561060 - MSTD LTR MaLR 0 396 1 1971 155 13 7 chr4 55727840 55728143 -128560519 + AluJo SINE Alu 3 307 -5 827 168 0 0 chr4 55728606 55728737 -128559925 - FLAM_C SINE Alu -1 132 2 351 239 247 47 chr4 55729124 55729379 -128559283 - MLT1J LTR MaLR -18 493 188 289 135 19 0 chr4 55729524 55729576 -128559086 - MER57A-int LTR ERV1 -213 7324 7272 596 134 59 8 chr4 55729576 55729695 -128558967 - LTR54B LTR ERV1 -371 127 3 5260 153 37 16 chr4 55729695 55730675 -128557987 - MER57A-int LTR ERV1 -391 7146 6147 306 0 0 0 chr4 55730706 55730740 -128557922 + (TA)n Simple_repeat Simple_repeat 2 35 0 1377 157 60 26 chr4 55730802 55731069 -128557593 - AluJo SINE Alu -30 282 7 2077 134 3 15 chr4 55731069 55731411 -128557251 - MER57A-int LTR ERV1 -1373 6164 5827 2739 157 33 61 chr4 55731500 55732206 -128556456 - MER57A-int LTR ERV1 -1957 4374 3689 624 180 66 50 chr4 55732297 55732702 -128555960 - MER57A-int LTR ERV1 -2655 3676 1790 261 148 0 0 chr4 55732722 55732776 -128555886 - MER57A-int LTR ERV1 -3878 2880 2827 374 213 11 11 chr4 55732897 55732991 -128555671 - MER57A-int LTR ERV1 -2884 3447 3354 406 263 0 0 chr4 55733046 55733141 -128555521 - MER57A-int LTR ERV1 -2990 3341 3247 524 98 12 0 chr4 55733193 55733275 -128555387 - L1PA13 LINE L1 -9 6154 6072 469 177 26 101 chr4 55733321 55733562 -128555100 - MER57A-int LTR ERV1 -3732 1391 1198 541 200 143 7 chr4 55733563 55733703 -128554959 - MER34C LTR ERV1 -268 317 159 1099 136 4 76 chr4 55733922 55734158 -128554504 - MER57A-int LTR ERV1 -6763 774 556 488 61 0 0 chr4 55734170 55734236 -128554426 + MER41B LTR ERV1 1 66 -569 2355 177 11 118 chr4 55734242 55734948 -128553714 - LTR27 LTR ERV1 -3 633 3 3605 135 2 0 chr4 55734948 55735520 -128553142 + MER41B LTR ERV1 63 635 0 2724 203 7 4 chr4 55735527 55736084 -128552578 - MER57A-int LTR ERV1 -3806 2525 1 1995 105 17 154 chr4 55736084 55736126 -128552536 - MER57A LTR ERV1 0 403 357 2166 109 3 0 chr4 55736126 55736433 -128552229 + AluSp SINE Alu 1 308 0 1995 105 17 154 chr4 55736433 55736856 -128551806 - MER57A LTR ERV1 -46 357 1 1141 186 32 5 chr4 55737003 55737223 -128551439 - MLT1A1 LTR MaLR 0 365 140 23 0 0 0 chr4 55737251 55737274 -128551388 + AT_rich Low_complexity Low_complexity 1 23 0 2000 137 10 0 chr4 55737274 55737567 -128551095 + AluSg SINE Alu 1 296 -14 254 77 0 0 chr4 55737574 55737613 -128551049 + AluSc SINE Alu 233 271 -28 270 0 0 0 chr4 55737614 55737644 -128551018 + (TC)n Simple_repeat Simple_repeat 2 31 0 1995 135 40 3 chr4 55737692 55737989 -128550673 + AluSg SINE Alu 1 308 -2 1686 184 0 38 chr4 55737989 55738282 -128550380 - AluJo SINE Alu -30 282 1 723 204 0 7 chr4 55738290 55738437 -128550225 - MLT1A1 LTR MaLR -219 146 1 359 252 73 41 chr4 55738515 55738638 -128550024 + L2 LINE L2 3139 3265 -7 258 271 29 43 chr4 55738987 55739127 -128549535 + MIR3 SINE MIR 49 186 -22 2922 9 0 0 chr4 55739660 55739978 -128548684 + AluYb8 SINE Alu 1 318 0 1806 176 75 34 chr4 55740113 55740180 -128548482 - MLT1C LTR MaLR -6 461 398 3580 109 6 74 chr4 55740180 55740831 -128547831 - MER4B LTR ERV1 0 610 4 1806 176 75 34 chr4 55740831 55741200 -128547462 - MLT1C LTR MaLR -69 398 7 787 149 8 30 chr4 55741238 55741372 -128547290 - FLAM_C SINE Alu -2 131 1 780 158 0 27 chr4 55741385 55741569 -128547093 + CT-rich Low_complexity Low_complexity 1 179 0 800 228 6 0 chr4 55741571 55741733 -128546929 - FRAM SINE Alu -13 163 1 1772 158 0 27 chr4 55742298 55742617 -128546045 - AluSx SINE Alu 0 311 1 235 275 162 35 chr4 55742627 55742769 -128545893 + MIR3 SINE MIR 40 199 -9 344 323 102 52 chr4 55743801 55744250 -128544412 - L2 LINE L2 -202 3070 2599 5366 131 5 45 chr4 55744409 55745506 -128543156 + L1PB3 LINE L1 5084 6150 -4 21 0 0 0 chr4 55745525 55745546 -128543116 + AT_rich Low_complexity Low_complexity 1 21 0 25 21 0 43 chr4 55745606 55745625 -128543037 + AT_rich Low_complexity Low_complexity 1 19 -26 1853 109 12 100 chr4 55745625 55745955 -128542707 + AluSx SINE Alu 1 301 -11 25 21 0 43 chr4 55745955 55745982 -128542680 + AT_rich Low_complexity Low_complexity 19 45 0 206 196 0 43 chr4 55746155 55746201 -128542461 + T-rich Low_complexity Low_complexity 4 47 0 727 160 64 5 chr4 55746215 55746402 -128542260 - L1MC5 LINE L1 -518 7443 7246 577 284 28 14 chr4 55746429 55746718 -128541944 - L1M4 LINE L1 -1101 5045 4753 1764 168 11 0 chr4 55746733 55747018 -128541644 - AluJo SINE Alu -24 288 1 336 339 98 16 chr4 55747114 55747359 -128541303 - L1M4 LINE L1 -1543 4603 4339 1063 98 0 24 chr4 55747481 55747645 -128541017 + L1P5 LINE L1 5410 5569 -585 2073 110 3 20 chr4 55748049 55748350 -128540312 - AluSx SINE Alu -11 301 6 1307 99 34 34 chr4 55749553 55749786 -128538876 + MSTB1 LTR MaLR 1 233 -199 363 98 0 0 chr4 55749794 55749855 -128538807 + (TC)n Simple_repeat Simple_repeat 1 61 0 1105 179 13 30 chr4 55749855 55750089 -128538573 + MSTB1 LTR MaLR 203 432 0 667 236 73 0 chr4 55750516 55750681 -128537981 - MER58A DNA MER1_type 0 224 48 843 99 7 70 chr4 55751441 55751583 -128537079 + FLAM_C SINE Alu 1 133 0 263 331 113 10 chr4 55751801 55752005 -128536657 + MIR SINE MIR 28 251 -11 1311 174 47 109 chr4 55752130 55752514 -128536148 + MLT1A1 LTR MaLR 6 365 0 183 289 0 0 chr4 55753512 55753550 -128535112 + MIR3 SINE MIR 118 155 -53 296 336 37 9 chr4 55754209 55754316 -128534346 + L2 LINE L2 3158 3267 -5 539 233 82 13 chr4 55754396 55754687 -128533975 + L1ME3A LINE L1 5587 5951 -219 308 221 63 11 chr4 55754695 55754790 -128533872 + L1ME3A LINE L1 6008 6107 -63 1907 184 84 84 chr4 55755101 55755661 -128533001 - L1ME1 LINE L1 -187 5979 5419 2009 97 0 15 chr4 55755661 55755969 -128532693 - AluSx SINE Alu 0 324 21 1907 184 84 84 chr4 55755969 55756234 -128532428 - L1ME1 LINE L1 -747 5419 5156 689 183 48 0 chr4 55756235 55756361 -128532301 - FLAM_A SINE Alu -5 137 6 1910 226 51 30 chr4 55756361 55757026 -128531636 - L1ME1 LINE L1 -1207 4939 4261 2160 155 70 19 chr4 55757035 55757507 -128531155 - L1MB7 LINE L1 0 6184 5689 22 0 0 0 chr4 55757538 55757560 -128531102 + AT_rich Low_complexity Low_complexity 1 22 0 1535 220 69 14 chr4 55758965 55759401 -128529261 + MLT1C LTR MaLR 1 460 -7 512 269 82 39 chr4 55759868 55760125 -128528537 + L1ME LINE L1 5494 5761 -360 372 271 135 16 chr4 55760484 55760676 -128527986 - L1MC/D LINE L1 -1985 5823 5609 471 63 0 0 chr4 55760678 55760741 -128527921 + (CA)n Simple_repeat Simple_repeat 2 64 0 249 250 43 14 chr4 55760773 55760913 -128527749 + (TA)n Simple_repeat Simple_repeat 1 144 0 1260 230 111 72 chr4 55761014 55761584 -128527078 - MLT1G1 LTR MaLR -2 593 2 440 303 80 29 chr4 55761588 55761855 -128526807 - L1MC/D LINE L1 -517 5604 5311 214 237 0 34 chr4 55761859 55761918 -128526744 - MIR3 SINE MIR -39 169 113 1991 117 0 0 chr4 55761971 55762237 -128526425 + AluSx SINE Alu 1 266 -46 38 22 0 0 chr4 55762241 55762286 -128526376 + AT_rich Low_complexity Low_complexity 1 45 0 1443 181 85 15 chr4 55763469 55763739 -128524923 - AluJo SINE Alu -18 294 6 551 290 28 113 chr4 55764481 55764878 -128523784 - L2 LINE L2 0 3272 2910 407 337 33 13 chr4 55765548 55765851 -128522811 + HAL1 LINE L1 256 564 -1943 327 298 89 76 chr4 55765984 55766458 -128522204 + MLT1J LTR MaLR 20 499 -12 2365 83 20 11 chr4 55766594 55766944 -128521718 - L1MA1 LINE L1 0 6302 5950 306 322 101 7 chr4 55767286 55767435 -128521227 - L2 LINE L2 -854 2460 2298 2080 144 0 0 chr4 55770524 55770823 -128517839 + AluSx SINE Alu 1 299 -13 8315 16 0 0 chr4 55771537 55772523 -128516139 - L1PA2 LINE L1 -2 6153 5167 208 273 0 61 chr4 55773072 55773171 -128515491 + T-rich Low_complexity Low_complexity 3 95 0 521 319 58 5 chr4 55773313 55773504 -128515158 - MIR SINE MIR -34 228 28 748 229 133 14 chr4 55773562 55773780 -128514882 + MIR SINE MIR 3 246 -16 514 269 42 72 chr4 55774860 55775124 -128513538 + MER112 DNA MER1_type 1 256 0 333 217 278 30 chr4 55776333 55776467 -128512195 - MIR3 SINE MIR -11 197 26 244 298 75 37 chr4 55777188 55777349 -128511313 + L3b LINE CR1 1303 1469 -114 2172 110 0 35 chr4 55777783 55778102 -128510560 + AluSg SINE Alu 1 308 -2 4649 190 14 13 chr4 55778532 55779063 -128509599 + ERVL-C1 LTR ERVL 2786 3320 -2444 2548 123 31 14 chr4 55779063 55779421 -128509241 + THE1B LTR MaLR 1 364 0 4649 190 14 13 chr4 55779421 55779730 -128508932 + ERVL-C1 LTR ERVL 3320 3627 -2137 1942 124 76 24 chr4 55779732 55780037 -128508625 + MER4D LTR ERV1 1 326 -546 2211 128 3 0 chr4 55780037 55780341 -128508321 - AluSx SINE Alu -7 305 1 1942 124 76 24 chr4 55780341 55780365 -128508297 + MER4D LTR ERV1 326 347 -525 1340 187 12 28 chr4 55780370 55780621 -128508041 + AluJo SINE Alu 5 251 -61 363 165 206 0 chr4 55780633 55780730 -128507932 + MER4D LTR ERV1 341 457 -446 1556 77 0 0 chr4 55780867 55781062 -128507600 + AluSc SINE Alu 115 309 0 2287 131 69 41 chr4 55781063 55781482 -128507180 + MER4D LTR ERV1 442 872 0 2145 164 77 5 chr4 55781482 55781871 -128506791 + ERVL-C1 LTR ERVL 3626 4042 -1722 4274 199 92 17 chr4 55781885 55781950 -128506712 + ERVL-C1 LTR ERVL 4720 4779 -985 3335 130 58 40 chr4 55781950 55782550 -128506112 - LTR36 LTR ERV1 0 611 1 4274 199 92 17 chr4 55782550 55783447 -128505215 + ERVL-C1 LTR ERVL 4779 5755 -9 1204 223 22 76 chr4 55783448 55783807 -128504855 + MLT2C1 LTR ERVL 1 378 -19 279 54 0 0 chr4 55783807 55783844 -128504818 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 447 19 0 0 chr4 55783846 55783898 -128504764 + (TCCA)n Simple_repeat Simple_repeat 2 53 0 1204 223 22 76 chr4 55783898 55783943 -128504719 + MLT2C1 LTR ERVL 379 386 -11 2029 137 27 0 chr4 55784313 55784613 -128504049 - AluSx SINE Alu -4 308 1 1602 111 36 18 chr4 55785368 55785593 -128503069 - MER30 DNA MER1_type -1 229 1 275 218 0 0 chr4 55785859 55785914 -128502748 + MER46C DNA MER2_type 259 313 -25 424 368 69 38 chr4 55785936 55786254 -128502408 - L2 LINE L2 -21 3251 2924 2223 159 16 0 chr4 55786313 55786678 -128501984 - MLT1B LTR MaLR 0 390 20 23 0 0 0 chr4 55786678 55786701 -128501961 + AT_rich Low_complexity Low_complexity 1 23 0 324 152 196 65 chr4 55786850 55786873 -128501789 + MER31A LTR ERV1 354 373 -112 2550 108 134 8 chr4 55786873 55787253 -128501409 - MSTA LTR MaLR 0 428 1 324 152 196 65 chr4 55787253 55787321 -128501341 + MER31A LTR ERV1 373 457 -28 2667 60 30 0 chr4 55787538 55787871 -128500791 - MER11B LTR ERVK -893 343 1 366 23 0 0 chr4 55788366 55788409 -128500253 + (TG)n Simple_repeat Simple_repeat 1 43 0 429 259 46 8 chr4 55788556 55788687 -128499975 - MER103 DNA DNA -11 155 20 180 436 0 0 chr4 55789276 55789354 -128499308 - MIR SINE MIR -173 89 12 2300 84 0 10 chr4 55790088 55790385 -128498277 - AluSg SINE Alu -16 294 1 22 0 0 0 chr4 55791429 55791451 -128497211 + AT_rich Low_complexity Low_complexity 1 22 0 2240 125 75 66 chr4 55791995 55792064 -128496598 - MSTA LTR MaLR 0 428 361 2232 116 0 0 chr4 55792064 55792365 -128496297 + AluSx SINE Alu 1 301 -11 2240 125 75 66 chr4 55792365 55792531 -128496131 - MSTA LTR MaLR -67 361 198 867 185 80 0 chr4 55792531 55792693 -128495969 - FAM SINE Alu 0 175 1 2240 125 75 66 chr4 55792693 55792880 -128495782 - MSTA LTR MaLR -230 198 1 886 141 39 0 chr4 55793187 55793315 -128495347 - FLAM_A SINE Alu 0 133 1 679 221 37 0 chr4 55793593 55793756 -128494906 + MIR SINE MIR 84 252 -10 2202 102 24 0 chr4 55793760 55793882 -128494780 + AluSq SINE Alu 1 119 -194 279 0 0 0 chr4 55793882 55793913 -128494749 + (CA)n Simple_repeat Simple_repeat 2 32 0 2202 102 24 0 chr4 55793913 55794084 -128494578 + AluSq SINE Alu 119 301 -12 21 0 0 0 chr4 55794521 55794542 -128494120 + AT_rich Low_complexity Low_complexity 1 21 0 2011 151 6 3 chr4 55794693 55795004 -128493658 - AluJb SINE Alu 0 312 1 1973 125 3 26 chr4 55795569 55795874 -128492788 + AluSx SINE Alu 1 298 -14 652 184 6 18 chr4 55796239 55796407 -128492255 + CT-rich Low_complexity Low_complexity 1 166 0 313 332 142 22 chr4 55796543 55796769 -128491893 + L2 LINE L2 3017 3269 -44 3944 94 15 0 chr4 55797732 55798252 -128490410 + L1PA14 LINE L1 5634 6161 0 858 181 7 0 chr4 55798272 55798410 -128490252 + FAM SINE Alu 5 143 -42 437 276 255 5 chr4 55798751 55798947 -128489715 + L3 LINE CR1 1331 1575 -2 595 242 26 7 chr4 55799241 55799394 -128489268 + MER103 DNA DNA 8 163 -3 439 290 69 0 chr4 55799469 55799614 -128489048 - MIR SINE MIR -56 206 52 7503 202 25 26 chr4 55800067 55802015 -128486647 + L1MB4 LINE L1 3602 5555 -619 272 211 35 18 chr4 55802041 55802098 -128486564 - MIR3 SINE MIR -49 159 102 1107 96 0 0 chr4 55802119 55802265 -128486397 - L1P LINE L1 -5990 156 11 8175 19 6 0 chr4 55802266 55803266 -128485396 + L1PA4 LINE L1 5151 6155 0 388 302 185 50 chr4 55803305 55803603 -128485059 + L2 LINE L2 2935 3272 0 2466 133 6 6 chr4 55804039 55804376 -128484286 + MER1B DNA MER1_type 1 337 0 213 318 220 12 chr4 55804595 55804840 -128483822 + L3b LINE CR1 1277 1572 -11 724 282 79 45 chr4 55805433 55805812 -128482850 - MLT1L LTR MaLR 0 615 224 872 142 8 15 chr4 55807131 55807265 -128481397 + FLAM_C SINE Alu 1 133 0 2377 108 0 0 chr4 55807402 55807709 -128480953 + AluSx SINE Alu 1 307 -5 2084 125 197 8 chr4 55807893 55808253 -128480409 - MSTA LTR MaLR 0 428 1 1604 153 7 35 chr4 55808404 55808686 -128479976 - AluJo SINE Alu -19 293 20 807 221 18 0 chr4 55808700 55808863 -128479799 - MIR SINE MIR -41 221 56 2005 161 0 0 chr4 55809070 55809375 -128479287 + AluSx SINE Alu 1 305 -7 1111 38 0 0 chr4 55809375 55809507 -128479155 + AluY SINE Alu 172 303 -8 1386 189 40 51 chr4 55810095 55810251 -128478411 - AluJo SINE Alu -19 293 140 2130 111 21 0 chr4 55810251 55810539 -128478123 - AluSx SINE Alu -17 295 2 1386 189 40 51 chr4 55810539 55810678 -128477984 - AluJo SINE Alu -172 140 1 192 138 17 52 chr4 55811110 55811168 -128477494 + CT-rich Low_complexity Low_complexity 2 57 0 1343 176 77 29 chr4 55811186 55811459 -128477203 - L1PA16 LINE L1 0 6166 5881 470 179 36 0 chr4 55811459 55811543 -128477119 - U6 snRNA snRNA -15 92 6 2788 171 27 2 chr4 55811778 55812258 -128476404 + L1MB4 LINE L1 5687 6178 -2 1750 142 9 62 chr4 55812349 55812674 -128475988 + AluJo SINE Alu 1 308 -4 231 269 177 31 chr4 55812830 55812960 -128475702 + MIR3 SINE MIR 34 182 -26 226 314 165 0 chr4 55814424 55814545 -128474117 + MIR SINE MIR 41 181 -81 1210 174 14 27 chr4 55814607 55814826 -128473836 + MSTB LTR MaLR 211 426 0 2736 146 7 7 chr4 55814826 55815258 -128473404 + MSTB-int LTR MaLR 1 432 -1219 2489 64 0 0 chr4 55815488 55815783 -128472879 - AluY SINE Alu -16 295 1 716 276 139 26 chr4 55815802 55816408 -128472254 + L1MEc LINE L1 789 1462 -4934 2548 154 65 2 chr4 55816426 55816829 -128471833 - MSTA LTR MaLR 0 428 1 1693 168 20 7 chr4 55816907 55817199 -128471463 + AluJo SINE Alu 4 299 -13 1046 245 71 30 chr4 55817213 55817591 -128471071 + L1M4 LINE L1 4263 4698 -1448 2165 128 0 7 chr4 55817591 55817935 -128470727 + AluSx SINE Alu 1 312 0 1046 245 71 30 chr4 55817935 55818033 -128470629 + L1M4 LINE L1 4698 4790 -1356 272 310 23 70 chr4 55818140 55818311 -128470351 + MIR SINE MIR 95 257 -5 227 265 0 0 chr4 55818321 55818370 -128470292 + (CTA)n Simple_repeat Simple_repeat 2 50 0 207 88 0 0 chr4 55818620 55818654 -128470008 + (TA)n Simple_repeat Simple_repeat 2 35 0 295 58 0 39 chr4 55819079 55819131 -128469531 + (TA)n Simple_repeat Simple_repeat 2 51 0 21 0 0 0 chr4 55819779 55819800 -128468862 + AT_rich Low_complexity Low_complexity 1 21 0 2081 93 9 75 chr4 55820322 55820654 -128468008 - AluSx SINE Alu -2 310 1 1340 194 122 4 chr4 55820744 55821022 -128467640 + AluJo SINE Alu 1 311 -1 1340 152 29 32 chr4 55822064 55822341 -128466321 + AluSx SINE Alu 1 276 -36 189 0 0 0 chr4 55822347 55822368 -128466294 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1823 138 11 18 chr4 55823255 55823537 -128465125 - AluSx SINE Alu -32 280 1 221 269 77 77 chr4 55823603 55823733 -128464929 - L2 LINE L2 -1 3271 3142 198 0 0 0 chr4 55823991 55824013 -128464649 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 317 119 0 59 chr4 55824038 55824139 -128464523 + (TTTTTG)n Simple_repeat Simple_repeat 6 100 0 11986 39 7 1 chr4 55824185 55825854 -128462808 - L1P1 LINE L1 -498 5657 3979 205 191 32 63 chr4 55826059 55826185 -128462477 + (CCCG)n Simple_repeat Simple_repeat 4 125 0 23 0 0 0 chr4 55826202 55826225 -128462437 + GC_rich Low_complexity Low_complexity 1 23 0 1889 167 3 7 chr4 55826485 55826790 -128461872 - AluJb SINE Alu -8 304 1 925 162 61 52 chr4 55827050 55827252 -128461410 + MER33 DNA MER1_type 22 229 -2356 2663 7 0 0 chr4 55827252 55827571 -128461091 + AluYa5 SINE Alu 2 320 0 925 162 61 52 chr4 55827571 55827596 -128461066 + MER33 DNA MER1_type 229 252 -72 248 154 19 0 chr4 55828060 55828112 -128460550 + (TA)n Simple_repeat Simple_repeat 2 54 0 213 39 0 0 chr4 55828496 55828522 -128460140 + (A)n Simple_repeat Simple_repeat 1 26 0 2379 59 10 3 chr4 55828798 55829088 -128459574 - AluSc SINE Alu -17 292 1 2051 146 7 0 chr4 55830579 55830873 -128457789 + AluSx SINE Alu 4 299 -13 2170 108 7 3 chr4 55830994 55831281 -128457381 + AluSx SINE Alu 1 288 -24 3729 137 42 15 chr4 55831295 55832487 -128456175 + L1MA4A LINE L1 4642 5862 -441 1699 73 4 47 chr4 55832489 55832721 -128455941 - AluSc SINE Alu -1 308 87 210 143 0 0 chr4 55833162 55833197 -128455465 + (GGA)n Simple_repeat Simple_repeat 1 35 0 2777 124 68 25 chr4 55835204 55835688 -128452974 - MER84 LTR ERV1 0 507 3 17494 37 1 0 chr4 55836584 55838698 -128449964 + L1P LINE L1 1553 3667 -2479 1730 175 14 0 chr4 55838836 55839128 -128449534 + AluJb SINE Alu 3 298 -14 1802 80 4 0 chr4 55839369 55839595 -128449067 + AluY SINE Alu 70 296 -15 240 244 47 55 chr4 55841501 55841628 -128447034 + MIR3 SINE MIR 78 203 -5 569 250 15 0 chr4 55842456 55842592 -128446070 + MLT2F LTR ERVL 1 138 -525 446 192 58 10 chr4 55842641 55842745 -128445917 + MLT1E1 LTR MaLR 176 284 -370 386 168 65 65 chr4 55842864 55842971 -128445691 + MLT2C2 LTR ERVL 348 454 -10 3658 128 98 11 chr4 55843270 55843719 -128444943 - MER39 LTR ERV1 0 707 182 2189 115 3 10 chr4 55843719 55844023 -128444639 - AluSx SINE Alu -10 302 1 3658 128 98 11 chr4 55844023 55844223 -128444439 - MER39 LTR ERV1 -525 182 1 2133 113 41 0 chr4 55844678 55844971 -128443691 + AluSx SINE Alu 1 305 -7 268 157 130 119 chr4 55845290 55845401 -128443261 + MER34 LTR ERV1 449 540 -2 212 220 17 17 chr4 55845401 55845460 -128443202 - MIR SINE MIR -122 140 82 421 266 42 52 chr4 55845462 55845654 -128443008 + MER110A LTR ERV1 267 456 -12 891 160 6 88 chr4 55845654 55845835 -128442827 - FRAM SINE Alu -12 164 1 2180 127 0 3 chr4 55846602 55846910 -128441752 + AluSx SINE Alu 1 307 -5 183 204 0 0 chr4 55847829 55847873 -128440789 + T-rich Low_complexity Low_complexity 1 44 0 1825 174 0 13 chr4 55848034 55848333 -128440329 + AluJo SINE Alu 1 295 -17 22 0 0 0 chr4 55848333 55848355 -128440307 + AT_rich Low_complexity Low_complexity 1 22 0 1821 161 0 3 chr4 55848476 55848768 -128439894 + AluJo SINE Alu 1 291 -21 427 317 14 0 chr4 55849567 55849712 -128438950 + MIR3 SINE MIR 40 186 -22 1842 133 0 63 chr4 55849749 55850079 -128438583 + AluJb SINE Alu 1 311 0 480 135 0 0 chr4 55850156 55850230 -128438432 + MER20 DNA MER1_type 1 74 -145 201 74 0 0 chr4 55850865 55850892 -128437770 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 186 118 0 0 chr4 55852006 55852040 -128436622 + (A)n Simple_repeat Simple_repeat 1 34 0 296 249 9 103 chr4 55852456 55852669 -128435993 - L2 LINE L2 -43 3270 3078 323 296 141 14 chr4 55852683 55852896 -128435766 - L2 LINE L2 -423 2891 2652 1782 111 0 0 chr4 55853092 55853326 -128435336 + AluSx SINE Alu 57 290 -22 950 158 85 0 chr4 55853343 55853507 -128435155 + FRAM SINE Alu 1 170 -6 36969 38 6 4 chr4 55855111 55859570 -128429092 - L1P LINE L1 -1668 4478 9 1893 130 203 66 chr4 55859896 55860349 -128428313 - MLT2B2 LTR ERVL 0 515 1 1951 117 32 4 chr4 55861350 55861631 -128427031 - AluSg SINE Alu -21 289 1 446 165 38 0 chr4 55861657 55861736 -128426926 + AluS SINE Alu 2 83 -229 358 250 55 55 chr4 55861837 55861900 -128426762 - L1ME1 LINE L1 -58 6108 6046 1761 210 55 3 chr4 55861900 55862247 -128426415 - MLT1A1 LTR MaLR 0 365 1 358 250 55 55 chr4 55862247 55862347 -128426315 - L1ME1 LINE L1 -119 6047 5945 41 36 0 0 chr4 55862371 55862426 -128426236 + AT_rich Low_complexity Low_complexity 1 55 0 673 167 35 35 chr4 55862430 55862574 -128426088 - L1MD1 LINE L1 -314 6426 6283 2930 206 55 57 chr4 55862592 55863460 -128425202 - L1MD1 LINE L1 -1488 5156 4290 1129 220 92 3 chr4 55863462 55863776 -128424886 - L1MD1 LINE L1 -3383 3261 2920 291 240 8 85 chr4 55863843 55863972 -128424690 - L1MD1 LINE L1 -5547 999 869 1821 108 28 93 chr4 55863986 55864310 -128424352 - AluSq SINE Alu -10 303 1 2292 103 0 0 chr4 55864315 55864607 -128424055 - AluSg SINE Alu -18 292 1 437 323 4 26 chr4 55865218 55865444 -128423218 - L1MD1 LINE L1 -6304 238 18 2164 136 10 0 chr4 55865880 55866188 -128422474 + AluSx SINE Alu 1 311 -1 1926 156 0 7 chr4 55866438 55866733 -128421929 + AluJo SINE Alu 1 293 -19 2314 122 0 0 chr4 55867004 55867315 -128421347 - AluSx SINE Alu -1 311 1 9035 51 16 1 chr4 55867501 55868754 -128419908 + L1P LINE L1 1 1268 -4878 967 251 85 21 chr4 55869113 55869500 -128419162 + LTR40c LTR ERVL 49 460 -5 189 344 33 0 chr4 55869897 55869987 -128418675 - L2 LINE L2 -2119 1195 1103 801 122 103 109 chr4 55869987 55870143 -128418519 - THE1C LTR MaLR 0 375 201 2150 125 7 0 chr4 55870183 55870480 -128418182 + AluSc SINE Alu 9 307 -2 1068 143 65 26 chr4 55870514 55870573 -128418089 - MER65A LTR ERV1 -206 239 184 182 37 37 0 chr4 55870573 55870600 -128418062 + (TG)n Simple_repeat Simple_repeat 2 29 0 1068 143 65 26 chr4 55870600 55870770 -128417892 - MER65A LTR ERV1 -261 184 1 3288 221 89 42 chr4 55870869 55871861 -128416801 - MER65A-int LTR ERV1 -129 4742 3705 762 149 14 7 chr4 55871995 55872143 -128416519 - L1MC1 LINE L1 -430 5903 5755 21 0 0 0 chr4 55872425 55872446 -128416216 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 55873102 55873123 -128415539 + AT_rich Low_complexity Low_complexity 1 21 0 243 152 0 0 chr4 55873439 55873485 -128415177 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chr4 55873951 55873973 -128414689 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 55874812 55874834 -128413828 + AT_rich Low_complexity Low_complexity 1 22 0 705 155 9 0 chr4 55875993 55876109 -128412553 - FLAM_A SINE Alu -16 117 1 239 218 126 11 chr4 55876572 55876659 -128412003 - Charlie7 DNA MER1_type -9 2603 2507 402 271 143 69 chr4 55876814 55877137 -128411525 - Charlie7 DNA MER1_type -2128 484 117 1989 146 13 10 chr4 55877137 55877438 -128411224 + AluJb SINE Alu 1 302 -10 402 271 143 69 chr4 55877438 55877561 -128411101 - Charlie7 DNA MER1_type -2495 117 5 1850 103 16 0 chr4 55877706 55877959 -128410703 + AluSq SINE Alu 1 257 -56 206 227 0 0 chr4 55878160 55878204 -128410458 + L3b LINE CR1 1305 1348 -235 210 318 56 9 chr4 55878349 55878456 -128410206 - MIR SINE MIR -57 205 94 447 304 58 23 chr4 55879989 55880160 -128408502 - MIR SINE MIR 0 262 86 348 287 73 29 chr4 55880269 55880405 -128408257 + MIR3 SINE MIR 18 159 -49 1894 150 14 0 chr4 55880561 55880854 -128407808 + AluSx SINE Alu 1 297 -15 497 215 30 37 chr4 55882274 55882409 -128406253 + MER63 DNA MER1_type 1 760 -302 763 225 175 4 chr4 55882471 55882711 -128405951 - LTR65 LTR ERV1 -38 631 351 639 99 8 66 chr4 55882714 55882835 -128405827 + L1MA4 LINE L1 6176 6289 -11 1851 136 4 0 chr4 55882866 55883130 -128405532 + AluJb SINE Alu 1 265 -47 2161 103 4 0 chr4 55883373 55883654 -128405008 - AluSx SINE Alu -30 282 1 204 194 0 0 chr4 55883771 55883807 -128404855 + GA-rich Low_complexity Low_complexity 2 37 0 2190 117 0 0 chr4 55884184 55884482 -128404180 - AluSx SINE Alu -14 298 1 683 118 37 23 chr4 55884770 55885032 -128403630 + L1MA8 LINE L1 5984 6291 0 24 0 0 0 chr4 55885298 55885322 -128403340 + AT_rich Low_complexity Low_complexity 1 24 0 347 274 22 48 chr4 55886027 55886175 -128402487 + MER5A DNA MER1_type 29 184 -5 21 0 0 0 chr4 55887633 55887654 -128401008 + AT_rich Low_complexity Low_complexity 1 21 0 191 247 27 27 chr4 55888279 55888296 -128400366 + MER5A DNA MER1_type 33 49 -140 192 40 0 0 chr4 55888296 55888321 -128400341 + (CAG)n Simple_repeat Simple_repeat 1 25 0 191 247 27 27 chr4 55888321 55888376 -128400286 + MER5A DNA MER1_type 48 105 -84 484 126 126 70 chr4 55888403 55888546 -128400116 - MER96B DNA MER1_type? -14 403 253 30 0 0 0 chr4 55888564 55888594 -128400068 + AT_rich Low_complexity Low_complexity 1 30 0 470 153 0 0 chr4 55888607 55888679 -128399983 - 5S rRNA rRNA -1 120 49 4632 84 8 5 chr4 55888697 55889353 -128399309 - L1PA3 LINE L1 -3 6152 5495 2046 125 20 3 chr4 55889736 55890039 -128398623 - AluSx SINE Alu -4 308 1 2285 108 0 3 chr4 55890198 55890494 -128398168 + AluSq SINE Alu 1 295 -18 245 152 0 0 chr4 55890564 55890610 -128398052 - L1M LINE L1 -693 5428 5383 2298 76 24 3 chr4 55892379 55892670 -128395992 + AluSx SINE Alu 1 297 -15 2084 122 26 0 chr4 55893430 55893734 -128394928 - AluSx SINE Alu 0 312 1 22 35 0 0 chr4 55894056 55894085 -128394577 + AT_rich Low_complexity Low_complexity 1 29 0 1550 166 40 23 chr4 55894085 55894386 -128394276 + AluJo SINE Alu 1 306 -6 2279 106 7 0 chr4 55894421 55894722 -128393940 - AluSc SINE Alu -6 303 1 542 191 124 0 chr4 55894760 55894865 -128393797 + AluJb SINE Alu 142 259 -53 1548 185 7 4 chr4 55894896 55895204 -128393458 - AluJb SINE Alu 0 309 1 234 98 0 73 chr4 55895640 55895681 -128392981 + MER5B DNA MER1_type 6 43 -135 188 242 61 91 chr4 55895684 55895750 -128392912 - MER5B DNA MER1_type -101 77 14 1812 136 93 6 chr4 55896679 55897011 -128391651 - MER46B DNA MER2_type 0 236 1 2117 119 10 7 chr4 55897959 55898262 -128390400 - AluSx SINE Alu -8 304 1 1199 169 131 32 chr4 55898700 55898944 -128389718 + MER2 DNA MER2_type 1 284 -61 1761 144 6 69 chr4 55898944 55899030 -128389632 - AluJo SINE Alu 0 312 222 2358 77 10 19 chr4 55899030 55899342 -128389320 - AluY SINE Alu -2 309 1 1761 144 6 69 chr4 55899342 55899574 -128389088 - AluJo SINE Alu -90 222 14 1199 169 131 32 chr4 55899574 55899643 -128389019 + MER2 DNA MER2_type 284 345 0 209 327 161 60 chr4 55899648 55900046 -128388616 - L2 LINE L2 0 3272 2835 928 180 34 0 chr4 55900874 55901052 -128387610 - MER20 DNA MER1_type 0 219 36 25 0 0 0 chr4 55901415 55901440 -128387222 + AT_rich Low_complexity Low_complexity 1 25 0 2089 113 0 45 chr4 55901443 55901752 -128386910 + AluSx SINE Alu 1 295 -17 252 0 0 0 chr4 55901804 55901832 -128386830 + (CA)n Simple_repeat Simple_repeat 1 28 0 24 0 0 0 chr4 55901957 55901981 -128386681 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr4 55902072 55902100 -128386562 + AT_rich Low_complexity Low_complexity 1 28 0 792 207 78 11 chr4 55902350 55902529 -128386133 + MER20 DNA MER1_type 29 219 0 2215 74 46 0 chr4 55902942 55903225 -128385437 + AluSp SINE Alu 1 296 -17 715 188 8 8 chr4 55903439 55903572 -128385090 - FLAM_C SINE Alu -10 133 1 23 0 0 0 chr4 55903599 55903622 -128385040 + AT_rich Low_complexity Low_complexity 1 23 0 31 0 0 0 chr4 55904040 55904071 -128384591 + AT_rich Low_complexity Low_complexity 1 31 0 25 65 0 0 chr4 55904796 55904842 -128383820 + AT_rich Low_complexity Low_complexity 1 46 0 2181 104 3 0 chr4 55904946 55905235 -128383427 + AluSx SINE Alu 1 290 -22 1904 118 16 40 chr4 55905756 55906060 -128382602 - AluSx SINE Alu -15 297 1 180 111 0 0 chr4 55906068 55906095 -128382567 + (T)n Simple_repeat Simple_repeat 1 27 0 2867 16 0 0 chr4 55906664 55906982 -128381680 + AluYb8 SINE Alu 1 318 0 271 248 46 64 chr4 55908330 55908439 -128380223 - MER5A DNA MER1_type -22 167 61 680 249 178 35 chr4 55908558 55909305 -128379357 - HAL1 LINE L1 -1491 1016 1 1962 50 11 23 chr4 55909662 55909922 -128378740 - AluY SINE Alu -14 297 41 2188 124 7 0 chr4 55909922 55910220 -128378442 - AluSx SINE Alu -12 300 1 307 238 60 0 chr4 55911584 55911668 -128376994 + MIR SINE MIR 49 137 -71 321 283 0 33 chr4 55911972 55912064 -128376598 - L2 LINE L2 -44 3228 3140 * 745 147 0 0 chr4 55912062 55912178 -128376484 + MIR SINE MIR 107 222 -40 515 240 158 0 chr4 55912179 55912325 -128376337 + L1ME3 LINE L1 5600 5768 -402 741 142 0 18 chr4 55912376 55912489 -128376173 - AluJb SINE Alu -201 111 1 514 198 239 42 chr4 55912494 55912757 -128375905 + L1ME3 LINE L1 5781 6095 -67 254 311 47 38 chr4 55912845 55912951 -128375711 - MIR SINE MIR -86 122 16 849 152 0 0 chr4 55914807 55914939 -128373723 - FLAM_A SINE Alu 0 133 2 2396 174 62 54 chr4 55915000 55915148 -128373514 + L1MB7 LINE L1 5536 5681 -503 2974 141 91 4 chr4 55915148 55915710 -128372952 + L1MB3 LINE L1 5565 6175 -8 2396 174 62 54 chr4 55915710 55916044 -128372618 + L1MB7 LINE L1 5681 6027 -157 2276 87 0 7 chr4 55916044 55916344 -128372318 - AluSc SINE Alu -10 299 2 2396 174 62 54 chr4 55916344 55916492 -128372170 + L1MB7 LINE L1 6027 6172 -12 803 256 52 19 chr4 55916640 55916910 -128371752 - MER21B LTR ERV1 -584 279 1 692 216 0 8 chr4 55918991 55919125 -128369537 - FLAM_A SINE Alu 0 133 1 825 147 159 0 chr4 55919466 55919623 -128369039 - MER5A DNA MER1_type -1 188 7 710 179 7 7 chr4 55919773 55919913 -128368749 - MLT1A2 LTR MaLR -234 140 1 318 50 0 0 chr4 55919948 55919988 -128368674 + (CA)n Simple_repeat Simple_repeat 1 40 0 1995 134 3 13 chr4 55920179 55920477 -128368185 - AluSx SINE Alu -17 295 1 184 360 132 15 chr4 55920909 55920971 -128367691 - MIR3 SINE MIR -26 182 129 3315 109 24 40 chr4 55920971 55921503 -128367159 - MER1A DNA MER1_type 0 527 4 184 360 132 15 chr4 55921503 55921576 -128367086 - MIR3 SINE MIR -79 129 31 22 70 0 0 chr4 55921994 55922037 -128366625 + AT_rich Low_complexity Low_complexity 1 43 0 201 132 0 0 chr4 55922051 55922089 -128366573 + (TA)n Simple_repeat Simple_repeat 1 38 0 694 112 19 0 chr4 55922531 55922638 -128366024 + AluSg/x SINE Alu 200 308 -4 272 277 136 74 chr4 55923121 55923511 -128365151 - L1ME4a LINE L1 -99 6022 5609 310 305 80 26 chr4 55923641 55923792 -128364870 - L1ME4a LINE L1 -693 5428 5270 997 172 11 11 chr4 55924207 55924387 -128364275 - AluSg/x SINE Alu -2 310 131 223 307 74 61 chr4 55924908 55925071 -128363591 + MIR SINE MIR 92 256 -6 * 1109 247 41 0 chr4 55925053 55925296 -128363366 - MIR SINE MIR -2 260 8 1080 183 74 53 chr4 55925699 55926036 -128362626 + L1ME LINE L1 5040 5386 -780 1945 157 7 0 chr4 55926036 55926330 -128362332 + AluJo SINE Alu 2 297 -15 1080 183 74 53 chr4 55926330 55926540 -128362122 + L1ME LINE L1 5386 5590 -576 1036 164 0 0 chr4 55926894 55927053 -128361609 + AluJb SINE Alu 1 159 -153 2158 189 73 45 chr4 55927125 55927145 -128361517 + MLT1F1 LTR MaLR 8 26 -541 2332 106 0 0 chr4 55927145 55927447 -128361215 + AluSg SINE Alu 1 302 -8 2158 189 73 45 chr4 55927447 55927533 -128361129 + MLT1F1 LTR MaLR 26 108 -459 1829 179 0 3 chr4 55927533 55927829 -128360833 - AluJb SINE Alu -17 295 1 2158 189 73 45 chr4 55927829 55928256 -128360406 + MLT1F1 LTR MaLR 108 557 -10 498 282 7 21 chr4 55928258 55928400 -128360262 - MIR SINE MIR -108 154 15 245 227 0 0 chr4 55929430 55929447 -128359215 + (TAA)n Simple_repeat Simple_repeat 1 17 -58 1998 126 7 0 chr4 55929447 55929733 -128358929 + AluSq SINE Alu 1 288 -25 245 227 0 0 chr4 55929733 55929790 -128358872 + (TAA)n Simple_repeat Simple_repeat 16 75 0 24 32 0 0 chr4 55930581 55930612 -128358050 + AT_rich Low_complexity Low_complexity 1 31 0 1684 163 65 14 chr4 55930924 55931218 -128357444 + AluJo SINE Alu 1 309 -3 29 0 0 0 chr4 55931406 55931435 -128357227 + AT_rich Low_complexity Low_complexity 1 29 0 1698 167 165 51 chr4 55931465 55931668 -128356994 + MLT2B1 LTR ERVL 1 180 -340 2002 153 3 7 chr4 55931668 55931969 -128356693 - AluSx SINE Alu -12 300 1 1698 167 165 51 chr4 55931969 55932232 -128356430 + MLT2B1 LTR ERVL 180 520 0 187 267 0 0 chr4 55932241 55932286 -128356376 + MIR SINE MIR 70 114 -148 660 221 15 7 chr4 55932298 55932434 -128356228 - FAM SINE Alu -44 141 5 474 242 68 0 chr4 55932443 55932575 -128356087 + MIR SINE MIR 101 241 -21 23 0 0 0 chr4 55934707 55934730 -128353932 + AT_rich Low_complexity Low_complexity 1 23 0 1755 183 13 13 chr4 55934878 55935190 -128353472 - AluJb SINE Alu 0 312 1 25 31 0 0 chr4 55936226 55936258 -128352404 + AT_rich Low_complexity Low_complexity 1 32 0 7646 27 8 4 chr4 55936400 55938072 -128350590 + L1PA4 LINE L1 4480 6155 0 1830 137 0 57 chr4 55938841 55939156 -128349506 + AluSg SINE Alu 5 301 -9 308 119 0 51 chr4 55939217 55939276 -128349386 + MLT1A1 LTR MaLR 3 58 -307 1699 141 47 0 chr4 55939276 55939553 -128349109 + AluSx SINE Alu 1 290 -22 297 109 0 0 chr4 55939553 55939599 -128349063 + (GA)n Simple_repeat Simple_repeat 1 46 0 229 29 0 59 chr4 55939599 55939633 -128349029 + (GAAAA)n Simple_repeat Simple_repeat 3 34 0 1515 168 77 10 chr4 55939635 55939932 -128348730 + MLT1A1 LTR MaLR 49 365 0 216 235 235 0 chr4 55939958 55940043 -128348619 - MIR SINE MIR -70 192 88 35 0 0 0 chr4 55941816 55941851 -128346811 + AT_rich Low_complexity Low_complexity 1 35 0 1778 174 7 3 chr4 55941866 55942165 -128346497 + AluSx SINE Alu 1 300 -12 1790 170 0 3 chr4 55942193 55942475 -128346187 + AluSx SINE Alu 1 281 -31 1344 183 4 17 chr4 55942616 55942856 -128345806 - AluJb SINE Alu -75 237 1 918 142 7 0 chr4 55942917 55943058 -128345604 - FLAM_C SINE Alu -1 142 1 26 50 0 0 chr4 55943812 55943852 -128344810 + AT_rich Low_complexity Low_complexity 1 40 0 2441 133 33 26 chr4 55944182 55944612 -128344050 + Tigger2a DNA MER2_type 2 434 0 2402 77 13 13 chr4 55946641 55946953 -128341709 + AluSp SINE Alu 1 312 -1 3626 116 15 17 chr4 55947638 55948166 -128340496 - MER1A DNA MER1_type 0 527 1 3127 204 77 50 chr4 55949412 55950232 -128338430 + MER21B LTR ERV1 1 842 -21 259 213 33 16 chr4 55950407 55950468 -128338194 + MER5A DNA MER1_type 106 167 -22 472 139 0 0 chr4 55951008 55951087 -128337575 - L1MB5 LINE L1 -10 6164 6086 2415 100 3 0 chr4 55951412 55951721 -128336941 - AluSp SINE Alu -3 310 1 1341 196 70 82 chr4 55952076 55952259 -128336403 + LTR24B LTR ERV1 1 185 -450 2298 77 7 7 chr4 55952259 55952557 -128336105 + AluSc SINE Alu 1 298 -11 1341 196 70 82 chr4 55952557 55952619 -128336043 + LTR24B LTR ERV1 185 246 -389 2111 55 0 0 chr4 55952619 55952876 -128335786 + AluY SINE Alu 44 300 -11 1341 196 70 82 chr4 55952876 55953216 -128335446 + LTR24B LTR ERV1 246 635 0 774 243 22 22 chr4 55953229 55953414 -128335248 - MIR SINE MIR -73 189 5 285 29 0 0 chr4 55955002 55955036 -128333626 + (A)n Simple_repeat Simple_repeat 1 34 0 240 343 143 23 chr4 55956359 55956412 -128332250 + L2 LINE L2 2324 2369 -945 1447 184 67 11 chr4 55956412 55956694 -128331968 - AluJb SINE Alu -14 298 1 240 343 143 23 chr4 55956694 55956940 -128331722 + L2 LINE L2 2369 2659 -655 23 0 0 0 chr4 55956975 55956998 -128331664 + AT_rich Low_complexity Low_complexity 1 23 0 2348 56 3 10 chr4 55959163 55959465 -128329197 + AluSx SINE Alu 1 300 -12 232 219 0 41 chr4 55959566 55959639 -128329023 + (TG)n Simple_repeat Simple_repeat 2 71 0 378 0 0 0 chr4 55959707 55959749 -128328913 + (TG)n Simple_repeat Simple_repeat 2 43 0 2356 85 0 3 chr4 55959990 55960296 -128328366 + AluSc SINE Alu 1 305 -4 22 35 0 0 chr4 55960694 55960723 -128327939 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 55960779 55960807 -128327855 + AT_rich Low_complexity Low_complexity 1 28 0 234 91 0 0 chr4 55960824 55960857 -128327805 + (TA)n Simple_repeat Simple_repeat 2 34 0 271 210 20 60 chr4 55961221 55961321 -128327341 + (CACCC)n Simple_repeat Simple_repeat 3 98 0 297 0 0 0 chr4 55961796 55961829 -128326833 + (TA)n Simple_repeat Simple_repeat 2 34 0 2071 113 0 23 chr4 55961849 55962151 -128326511 - AluSx SINE Alu -4 308 14 457 160 244 0 chr4 55962156 55962348 -128326314 - MER33 DNA MER1_type -266 58 1 2252 112 3 0 chr4 55962656 55962961 -128325701 - AluSx SINE Alu -6 306 1 296 289 34 101 chr4 55963042 55963069 -128325593 + L2 LINE L2 2566 2593 -721 1349 200 111 11 chr4 55963069 55963349 -128325313 - AluSg SINE Alu -2 308 1 296 289 34 101 chr4 55963349 55963470 -128325192 + L2 LINE L2 2593 2704 -610 195 346 26 26 chr4 55964762 55964840 -128323822 + MIR SINE MIR 16 93 -115 21 0 0 0 chr4 55964969 55964990 -128323672 + AT_rich Low_complexity Low_complexity 1 21 0 469 271 50 22 chr4 55965604 55965785 -128322877 - L3 LINE CR1 -189 1388 1203 2069 121 0 21 chr4 55966594 55966916 -128321746 - AluSx SINE Alu 0 316 1 11187 46 1 0 chr4 56167451 56169467 -128119195 - L1PA4 LINE L1 -153 6002 3985 1088 44 0 0 chr4 56169467 56169592 -128119070 + L1PA4 LINE L1 6020 6155 0 35 0 0 0 chr4 56169934 56169969 -128118693 + AT_rich Low_complexity Low_complexity 1 35 0 788 180 17 17 chr4 56170008 56170180 -128118482 + ALR/Alpha Satellite centromeric 1 172 0 348 24 0 0 chr4 56170453 56170494 -128118168 + (CA)n Simple_repeat Simple_repeat 2 42 0 30 27 0 0 chr4 56170536 56170573 -128118089 + AT_rich Low_complexity Low_complexity 1 37 0 6620 73 0 5 chr4 56170786 56171724 -128116938 - L1PA7 LINE L1 -4 6150 5216 798 11 0 0 chr4 56171724 56171814 -128116848 - L1PA3 LINE L1 -266 5889 5800 2054 50 0 4 chr4 56171814 56172094 -128116568 + L1PA3 LINE L1 5896 6155 0 782 230 6 34 chr4 56172094 56172401 -128116261 - L1P LINE L1 -922 5224 4916 27 62 0 0 chr4 56172454 56172502 -128116160 + AT_rich Low_complexity Low_complexity 1 48 0 23 33 0 0 chr4 56172601 56172631 -128116031 + AT_rich Low_complexity Low_complexity 1 30 0 299 109 55 0 chr4 56173032 56173087 -128115575 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 2417 55 0 10 chr4 56173815 56174126 -128114536 + AluY SINE Alu 1 308 -3 237 132 0 0 chr4 56175375 56175413 -128113249 + (TG)n Simple_repeat Simple_repeat 1 38 0 2875 255 49 68 chr4 56175677 56177589 -128111073 - L1ME LINE L1 -433 5733 3869 1499 242 19 3 chr4 56177589 56177948 -128110714 + MLT1A1 LTR MaLR 1 365 0 2875 255 49 68 chr4 56177948 56178169 -128110493 - L1ME LINE L1 -2297 3869 3645 21 0 0 0 chr4 56178198 56178219 -128110443 + AT_rich Low_complexity Low_complexity 1 21 0 376 299 108 34 chr4 56178471 56178739 -128109923 + L2 LINE L2 2936 3223 -90 25 51 0 0 chr4 56180366 56180405 -128108257 + AT_rich Low_complexity Low_complexity 1 39 0 440 182 0 10 chr4 56180557 56180656 -128108006 + AluSc SINE Alu 212 309 0 225 383 106 0 chr4 56180970 56181111 -128107551 + MER102a DNA MER1_type 172 327 -3 23 0 0 0 chr4 56181412 56181435 -128107227 + AT_rich Low_complexity Low_complexity 1 23 0 8272 104 18 10 chr4 56183286 56184540 -128104122 + L1P LINE L1 3891 5154 -992 4352 41 0 0 chr4 56184641 56185176 -128103486 - L1P LINE L1 -1945 4201 3667 * 10046 46 2 1 chr4 56185174 56186439 -128102223 + L1P LINE L1 2413 3678 -2468 23 0 0 0 chr4 56186649 56186672 -128101990 + AT_rich Low_complexity Low_complexity 1 23 0 462 170 0 71 chr4 56186672 56186784 -128101878 - L1MA9 LINE L1 0 6312 6209 2510 225 36 20 chr4 56186790 56187435 -128101227 - L1ME1 LINE L1 -63 6103 5449 962 221 97 38 chr4 56187438 56187705 -128100957 - MSTD LTR MaLR -9 387 105 1335 202 47 4 chr4 56187716 56187973 -128100689 - AluJo SINE Alu -44 268 1 352 104 30 0 chr4 56187988 56188055 -128100607 - L1PB1 LINE L1 -2 6149 6081 2230 162 88 58 chr4 56188055 56188718 -128099944 + L1MA4 LINE L1 5329 5791 -360 1759 160 10 10 chr4 56188553 56188866 -128099796 + L1PB1 LINE L1 5775 6087 -64 * 870 140 0 22 chr4 56189292 56189428 -128099234 - FLAM_C SINE Alu 0 143 11 24 32 0 0 chr4 56190452 56190483 -128098179 + AT_rich Low_complexity Low_complexity 1 31 0 24 67 0 0 chr4 56190661 56190706 -128097956 + AT_rich Low_complexity Low_complexity 1 45 0 796 233 113 1 chr4 56191623 56191920 -128096742 - MER58 DNA MER1_type -4 2416 10 221 0 0 33 chr4 56191960 56191990 -128096672 + (TTTAA)n Simple_repeat Simple_repeat 1 29 0 36 87 0 0 chr4 56191995 56192087 -128096575 + AT_rich Low_complexity Low_complexity 1 92 0 556 320 150 3 chr4 56192991 56193285 -128095377 - HAL1 LINE L1 -608 1899 1563 1764 134 13 62 chr4 56193287 56193660 -128095002 - THE1A LTR MaLR 0 355 1 10987 113 3 3 chr4 56193660 56195240 -128093422 - THE1A-int LTR MaLR 0 1580 1 1740 156 30 54 chr4 56195242 56195613 -128093049 - THE1B LTR MaLR -2 362 1 368 308 100 43 chr4 56195647 56195923 -128092739 - HAL1 LINE L1 -1159 1348 1089 289 61 20 20 chr4 56195923 56195972 -128092690 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 368 308 100 43 chr4 56195972 56196324 -128092338 - HAL1 LINE L1 -1418 1089 684 1255 309 66 24 chr4 56196437 56197062 -128091600 - L1ME3 LINE L1 -1 6161 5511 616 229 26 56 chr4 56197167 56197398 -128091264 + L1M4 LINE L1 4527 4750 -1396 403 258 89 36 chr4 56197455 56197680 -128090982 + L1M4 LINE L1 5018 5254 -892 5350 152 11 0 chr4 56198007 56199339 -128089323 - L1PA16 LINE L1 -17 6149 4812 3071 115 20 0 chr4 56199752 56200196 -128088466 - MLT2A2 LTR ERVL 0 453 1 201 74 0 0 chr4 56200342 56200369 -128088293 + (CA)n Simple_repeat Simple_repeat 2 28 0 501 138 37 88 chr4 56200928 56201145 -128087517 - Zaphod DNA AcHobo -3056 975 770 308 327 164 0 chr4 56202025 56202184 -128086478 - MIR SINE MIR 0 262 78 363 319 14 28 chr4 56202255 56202396 -128086266 + MER5A DNA MER1_type 2 140 -49 422 40 40 14 chr4 56202710 56202784 -128085878 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 916 223 109 8 chr4 56202825 56203081 -128085581 + L1MC3 LINE L1 7191 7472 -313 320 176 15 0 chr4 56203107 56203175 -128085487 + GA-rich Low_complexity Low_complexity 5 73 0 629 216 7 11 chr4 56203192 56203460 -128085202 + GA-rich Low_complexity Low_complexity 1 266 0 875 181 11 6 chr4 56203475 56203652 -128085010 + L1MC3 LINE L1 7505 7682 -103 286 336 46 30 chr4 56203657 56203788 -128084874 - MIR3 SINE MIR -38 170 38 7186 110 5 19 chr4 56205780 56206867 -128081795 + MER11C LTR ERVK 1 1071 0 2153 163 13 13 chr4 56207095 56207470 -128081192 + THE1C LTR MaLR 1 375 0 9464 135 42 7 chr4 56207470 56208997 -128079665 + THE1C-int LTR MaLR 1 1580 0 2453 119 3 16 chr4 56208997 56209374 -128079288 + THE1C LTR MaLR 1 372 -3 23 0 0 0 chr4 56209620 56209643 -128079019 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr4 56210291 56210324 -128078338 + AT_rich Low_complexity Low_complexity 1 33 0 417 353 141 29 chr4 56211115 56211629 -128077033 - L2 LINE L2 -78 3194 2616 737 336 39 59 chr4 56211631 56212297 -128076365 + L2 LINE L2 2668 3313 0 880 175 23 11 chr4 56212324 56212501 -128076161 + MLT1D LTR MaLR 327 505 0 1787 272 25 21 chr4 56212501 56212822 -128075840 - L1M4 LINE L1 -2318 4326 4008 360 0 0 0 chr4 56212822 56212862 -128075800 + (TG)n Simple_repeat Simple_repeat 1 40 0 1787 272 25 21 chr4 56212862 56213315 -128075347 - L1M4 LINE L1 -2636 4008 3549 518 280 0 7 chr4 56213426 56213569 -128075093 - L1M4 LINE L1 -3390 3254 3113 1374 242 32 43 chr4 56213581 56214130 -128074532 - L1M4 LINE L1 -4833 1709 1225 1914 246 89 110 chr4 56214147 56214532 -128074130 - L1M4 LINE L1 -5516 1026 634 232 200 0 0 chr4 56214532 56214582 -128074080 - LTR62 LTR ERVK -41 678 629 1914 246 89 110 chr4 56214582 56214933 -128073729 - L1M4 LINE L1 -5908 634 266 1480 182 26 36 chr4 56214933 56215240 -128073422 - AluJo SINE Alu -6 306 3 1914 246 89 110 chr4 56215240 56215500 -128073162 - L1M4 LINE L1 -6276 266 2 21 0 0 0 chr4 56216435 56216456 -128072206 + AT_rich Low_complexity Low_complexity 1 21 0 1152 140 189 45 chr4 56217167 56217313 -128071349 - AluSx SINE Alu 0 302 178 186 43 0 0 chr4 56217313 56217336 -128071326 + (TG)n Simple_repeat Simple_repeat 2 24 0 1152 140 189 45 chr4 56217336 56217453 -128071209 - AluSx SINE Alu -124 178 1 7066 45 29 0 chr4 56217533 56218405 -128070257 - MER11D LTR ERVK 0 897 1 1271 322 71 16 chr4 56219100 56219677 -128068985 + MLT2E LTR ERVL 16 624 -4 255 284 189 8 chr4 56220111 56220238 -128068424 + MER5A DNA MER1_type 37 186 -3 1163 263 100 11 chr4 56220936 56221476 -128067186 + L1ME LINE L1 301 888 -5182 230 347 16 24 chr4 56222386 56222510 -128066152 + MLT1L LTR MaLR 361 483 -132 1520 195 3 0 chr4 56222585 56222890 -128065772 - AluJb SINE Alu 0 306 1 901 162 0 0 chr4 56224593 56224741 -128063921 - L1MA3 LINE L1 -1 6304 6157 22 0 0 0 chr4 56225205 56225227 -128063435 + AT_rich Low_complexity Low_complexity 1 22 0 546 256 8 8 chr4 56225341 56225462 -128063200 - FLAM_C SINE Alu -22 121 1 564 203 110 0 chr4 56227721 56227839 -128060823 - FRAM SINE Alu -18 158 28 266 258 0 0 chr4 56228150 56228216 -128060446 + MLT1K LTR MaLR 523 588 0 31 0 0 0 chr4 56228527 56228558 -128060104 + AT_rich Low_complexity Low_complexity 1 31 0 306 198 81 12 chr4 56228666 56228752 -128059910 + MIR SINE MIR 65 156 -106 195 236 0 73 chr4 56228822 56228877 -128059785 + MIR SINE MIR 70 120 -142 24 91 0 0 chr4 56229092 56229158 -128059504 + AT_rich Low_complexity Low_complexity 1 66 0 939 360 85 30 chr4 56229475 56230378 -128058284 - L2 LINE L2 -623 2691 1739 1942 274 33 19 chr4 56231853 56232539 -128056123 + L1M4 LINE L1 3979 4681 -1465 2543 102 8 0 chr4 56232539 56232891 -128055771 + THE1A LTR MaLR 1 355 0 1942 274 33 19 chr4 56232891 56233042 -128055620 + L1M4 LINE L1 4681 4828 -1318 1771 254 52 103 chr4 56233046 56234107 -128054555 - L1M4 LINE L1 -2357 4025 3070 2221 123 0 0 chr4 56234107 56234417 -128054245 - AluSg SINE Alu 0 310 1 1771 254 52 103 chr4 56234417 56234946 -128053716 - L1M4 LINE L1 -3312 3070 2516 244 244 89 55 chr4 56234966 56235257 -128053405 - L1M4 LINE L1 -3924 2460 2160 795 277 79 63 chr4 56235351 56236048 -128052614 - L1M4 LINE L1 -4571 1813 1106 27 49 0 0 chr4 56236961 56237002 -128051660 + AT_rich Low_complexity Low_complexity 1 41 0 574 301 12 6 chr4 56237332 56237495 -128051167 - MIR SINE MIR -85 177 14 26 50 0 0 chr4 56237984 56238024 -128050638 + AT_rich Low_complexity Low_complexity 1 40 0 2736 239 22 18 chr4 56238270 56239043 -128049619 - L1M4 LINE L1 -912 5234 4459 631 138 100 0 chr4 56239022 56239152 -128049510 - L1MC2 LINE L1 -405 5939 5797 * 1252 245 71 7 chr4 56239159 56239469 -128049193 + LTR53 LTR ERVL 172 501 -18 24 32 0 0 chr4 56239937 56239968 -128048694 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr4 56240158 56240180 -128048482 + AT_rich Low_complexity Low_complexity 1 22 0 27 96 0 0 chr4 56240906 56240989 -128047673 + AT_rich Low_complexity Low_complexity 1 83 0 1810 167 6 10 chr4 56242584 56242896 -128045766 - AluSx SINE Alu -1 311 1 1774 213 37 76 chr4 56242915 56242956 -128045706 - MLT2B1 LTR ERVL 0 520 479 385 70 14 14 chr4 56242956 56243027 -128045635 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 1774 213 37 76 chr4 56243027 56243044 -128045618 - MLT2B1 LTR ERVL -41 479 463 12774 163 29 15 chr4 56243044 56245429 -128043233 - Tigger1 DNA MER2_type 0 2418 1 1774 213 37 76 chr4 56245429 56245910 -128042752 - MLT2B1 LTR ERVL -57 463 1 587 63 13 0 chr4 56246485 56246564 -128042098 + MADE1 DNA Mariner 1 80 0 184 216 98 0 chr4 56248747 56248798 -128039864 - MIR SINE MIR -1 261 206 1740 134 0 0 chr4 56249042 56249289 -128039373 + AluSc SINE Alu 30 276 -33 368 348 14 0 chr4 56249528 56249669 -128038993 - MIR3 SINE MIR -2 206 64 3125 194 170 150 chr4 56250522 56251565 -128037097 - MER31B-int LTR ERV1 -2686 2250 1230 664 206 0 37 chr4 56251565 56251701 -128036961 + FAM SINE Alu 2 132 -53 3125 194 170 150 chr4 56251701 56252713 -128035949 - MER31B-int LTR ERV1 -3706 1230 15 1446 242 65 11 chr4 56252764 56253198 -128035464 - MER31B LTR ERV1 -8 458 2 306 0 0 0 chr4 56253199 56253233 -128035429 + (CA)n Simple_repeat Simple_repeat 2 35 0 217 196 39 0 chr4 56253233 56253284 -128035378 + (CATATA)n Simple_repeat Simple_repeat 1 53 0 1214 239 40 43 chr4 56253856 56254207 -128034455 + MLT1A1 LTR MaLR 11 360 -5 722 256 45 54 chr4 56254500 56254742 -128033920 + MIR SINE MIR 22 261 -1 622 172 0 0 chr4 56254861 56254977 -128033685 - L1MA9 LINE L1 -7 6305 6190 1508 166 35 26 chr4 56254994 56255307 -128033355 + L1 LINE L1 3520 3835 -2311 410 262 66 52 chr4 56255639 56255910 -128032752 + HAL1 LINE L1 1219 1493 -1014 227 348 0 34 chr4 56256947 56257065 -128031597 + MLT1K LTR MaLR 383 496 -92 1886 48 0 15 chr4 56257080 56257553 -128031109 - L1P LINE L1 -5002 1144 551 7812 19 0 0 chr4 56257555 56258497 -128030165 + L1PA2 LINE L1 5214 6155 0 22 56 0 0 chr4 56258499 56258535 -128030127 + AT_rich Low_complexity Low_complexity 1 36 0 184 275 29 14 chr4 56258567 56258636 -128030026 - MIR SINE MIR -111 151 82 322 275 0 0 chr4 56259762 56259842 -128028820 + MLT1I LTR MaLR 98 177 -232 2671 100 3 11 chr4 56259888 56260259 -128028403 + THE1C LTR MaLR 1 368 -7 207 221 91 65 chr4 56261189 56261266 -128027396 + MIR SINE MIR 82 160 -102 28 0 0 0 chr4 56261864 56261892 -128026770 + AT_rich Low_complexity Low_complexity 1 28 0 221 301 9 26 chr4 56261917 56262030 -128026632 + (CATATA)n Simple_repeat Simple_repeat 3 113 0 811 270 59 70 chr4 56263940 56264384 -128024278 - L1MB8 LINE L1 -16 6162 5724 267 313 60 48 chr4 56264385 56264742 -128023920 + L1MCa LINE L1 981 1541 -5066 1521 266 60 4 chr4 56264773 56265028 -128023634 + L1MD3 LINE L1 7506 7798 -197 5843 107 11 6 chr4 56265028 56266158 -128022504 + L1PA13 LINE L1 5029 6163 0 1521 266 60 4 chr4 56266158 56266353 -128022309 + L1MD3 LINE L1 7798 7981 -14 2230 176 24 0 chr4 56266587 56267001 -128021661 + L1PA16 LINE L1 5733 6156 -10 27 29 0 0 chr4 56267037 56267071 -128021591 + AT_rich Low_complexity Low_complexity 1 34 0 27 62 0 0 chr4 56267153 56267201 -128021461 + AT_rich Low_complexity Low_complexity 1 48 0 25 31 0 0 chr4 56267290 56267322 -128021340 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr4 56267550 56267572 -128021090 + AT_rich Low_complexity Low_complexity 1 22 0 263 71 24 0 chr4 56267987 56268029 -128020633 + (CA)n Simple_repeat Simple_repeat 2 44 0 316 149 81 40 chr4 56268490 56268564 -128020098 + MADE1 DNA Mariner 4 80 0 3609 268 40 13 chr4 56268609 56270013 -128018649 + L1MCa LINE L1 30 1415 -4849 673 247 7 0 chr4 56271117 56271302 -128017360 - L1MB1 LINE L1 -311 5857 5694 * 1297 144 89 19 chr4 56271299 56271569 -128017093 + L1MB1 LINE L1 5869 6157 -11 434 264 77 10 chr4 56271767 56271959 -128016703 + L1MB5 LINE L1 5946 6162 -12 494 236 155 0 chr4 56271962 56272002 -128016660 - MER58 DNA MER1_type -2234 186 154 1836 126 4 0 chr4 56272002 56272256 -128016406 - AluSx SINE Alu -57 255 1 494 236 155 0 chr4 56272256 56272376 -128016286 - MER58 DNA MER1_type -2266 154 1 24 0 0 0 chr4 56272617 56272641 -128016021 + AT_rich Low_complexity Low_complexity 1 24 0 2005 122 0 7 chr4 56272641 56272929 -128015733 - AluSg SINE Alu -24 286 1 191 167 0 21 chr4 56273502 56273550 -128015112 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 360 222 81 10 chr4 56273561 56273660 -128015002 - L1MC4 LINE L1 -1323 6719 6614 464 221 26 0 chr4 56273664 56273818 -128014844 + (TA)n Simple_repeat Simple_repeat 1 158 0 2025 167 61 15 chr4 56273911 56274412 -128014250 - LTR27 LTR ERV1 0 501 3 34 79 0 0 chr4 56275816 56275892 -128012770 + AT_rich Low_complexity Low_complexity 1 76 0 2364 88 3 0 chr4 56275930 56276235 -128012427 + AluSp SINE Alu 1 306 -7 302 280 90 75 chr4 56276405 56276737 -128011925 - L1ME4a LINE L1 -6 6115 5779 593 296 58 36 chr4 56277148 56277425 -128011237 + L2 LINE L2 2588 2870 -444 1313 240 66 51 chr4 56277497 56277919 -128010743 + Charlie1b DNA MER1_type 3 436 -2325 1747 178 56 0 chr4 56277919 56278261 -128010401 - MER46B DNA MER2_type 0 236 1 1313 240 66 51 chr4 56278261 56278351 -128010311 + Charlie1b DNA MER1_type 436 523 0 355 292 29 112 chr4 56278367 56278644 -128010018 + L2 LINE L2 2943 3196 -117 309 275 22 0 chr4 56279402 56279493 -128009169 - L1ME4a LINE L1 -418 5703 5611 29 28 0 0 chr4 56279664 56279700 -128008962 + AT_rich Low_complexity Low_complexity 1 36 0 249 210 0 0 chr4 56279837 56279899 -128008763 + (TA)n Simple_repeat Simple_repeat 2 63 0 29 47 0 0 chr4 56280577 56280620 -128008042 + AT_rich Low_complexity Low_complexity 1 43 0 355 134 0 88 chr4 56280653 56280847 -128007815 + (TA)n Simple_repeat Simple_repeat 2 178 0 1037 186 61 109 chr4 56282723 56283034 -128005628 - AluJo SINE Alu -6 296 1 21 36 0 0 chr4 56283589 56283617 -128005045 + AT_rich Low_complexity Low_complexity 1 28 0 915 9 72 0 chr4 56284071 56284182 -128004480 + L1PA3 LINE L1 6034 6152 -3 285 80 20 0 chr4 56284209 56284259 -128004403 - MSTA LTR MaLR -27 401 351 195 42 0 0 chr4 56284259 56284283 -128004379 + (A)n Simple_repeat Simple_repeat 1 24 0 1596 196 10 7 chr4 56285207 56285513 -128003149 - AluJo SINE Alu -5 307 1 1770 119 0 0 chr4 56285601 56285869 -128002793 - L1P LINE L1 -3696 2450 2183 1267 136 11 0 chr4 56285869 56286053 -128002609 + AluSg/x SINE Alu 102 287 -25 417 54 0 0 chr4 56286053 56286109 -128002553 + (CATA)n Simple_repeat Simple_repeat 2 57 0 1032 70 0 51 chr4 56286109 56286265 -128002397 - L1P LINE L1 -4302 1844 1697 2180 131 6 9 chr4 56286272 56286609 -128002053 + LTR22A LTR ERVK 123 458 0 713 177 8 0 chr4 56286609 56286732 -128001930 + Charlie3 DNA MER1_type 2583 2706 -4 462 310 63 42 chr4 56288245 56288366 -128000296 - MIR SINE MIR 0 262 145 1946 186 60 27 chr4 56288366 56288780 -127999882 - MSTA LTR MaLR 0 428 1 462 310 63 42 chr4 56288780 56288897 -127999765 - MIR SINE MIR -117 145 19 26 30 0 0 chr4 56289521 56289554 -127999108 + AT_rich Low_complexity Low_complexity 1 33 0 2018 114 0 0 chr4 56289844 56290117 -127998545 + AluSc SINE Alu 11 283 -26 308 315 84 55 chr4 56291214 56291595 -127997067 + MLT1I LTR MaLR 16 407 -2 1817 261 108 37 chr4 56291719 56291853 -127996809 + MER69 DNA AcHobo 3 126 -2400 7912 85 4 9 chr4 56291853 56292930 -127995732 + MER11C LTR ERVK 1 1071 0 1817 261 108 37 chr4 56292930 56293830 -127994832 + MER69 DNA AcHobo 126 2458 -68 2026 130 0 0 chr4 56293833 56294126 -127994536 - AluSc SINE Alu -15 294 2 2803 7 0 0 chr4 56294135 56294445 -127994217 - AluYa5 SINE Alu -1 310 1 422 312 0 0 chr4 56294866 56295004 -127993658 + L1ME LINE L1 5686 5823 -343 256 221 52 26 chr4 56295183 56295260 -127993402 + L1MA10 LINE L1 6242 6320 -14 443 350 27 30 chr4 56296297 56296450 -127992212 + MIR SINE MIR 1 154 -108 1615 208 11 19 chr4 56296450 56296816 -127991846 - MER47A DNA MER2_type 0 366 4 443 350 27 30 chr4 56296816 56296925 -127991737 + MIR SINE MIR 154 262 0 208 143 0 0 chr4 56297778 56297813 -127990849 + (T)n Simple_repeat Simple_repeat 1 35 0 1809 325 76 23 chr4 56298320 56299192 -127989470 + L2 LINE L2 1721 2638 -676 25 51 0 0 chr4 56299557 56299596 -127989066 + AT_rich Low_complexity Low_complexity 1 39 0 481 283 52 40 chr4 56299596 56299806 -127988856 + LTR16C LTR ERVL 102 378 -113 2215 68 7 0 chr4 56299806 56300085 -127988577 - AluY SINE Alu -8 303 23 481 283 52 40 chr4 56300085 56300161 -127988501 + LTR16C LTR ERVL 378 452 -39 1237 177 145 8 chr4 56301288 56301751 -127986911 + LTR69 LTR ERVL 1 588 0 290 128 0 0 chr4 56302006 56302053 -127986609 + MADE1 DNA Mariner 1 47 -33 225 0 0 0 chr4 56303247 56303272 -127985390 + (CA)n Simple_repeat Simple_repeat 2 26 0 2187 99 0 0 chr4 56303671 56303996 -127984666 + AluY SINE Alu 1 325 0 1571 182 7 25 chr4 56304351 56304637 -127984025 - AluJo SINE Alu -20 292 12 24 77 0 0 chr4 56304735 56304787 -127983875 + AT_rich Low_complexity Low_complexity 1 52 0 26 30 0 0 chr4 56305527 56305560 -127983102 + AT_rich Low_complexity Low_complexity 1 33 0 2109 124 3 10 chr4 56305676 56305983 -127982679 - AluSq SINE Alu -8 305 1 24 32 0 0 chr4 56306073 56306104 -127982558 + AT_rich Low_complexity Low_complexity 1 31 0 28 29 0 0 chr4 56306308 56306343 -127982319 + AT_rich Low_complexity Low_complexity 1 35 0 791 158 0 43 chr4 56306907 56307046 -127981616 + FLAM_A SINE Alu 1 133 0 282 309 31 63 chr4 56309716 56309907 -127978755 - L2 LINE L2 -13 3300 3116 3875 111 97 115 chr4 56310716 56311609 -127977053 - pTR5 LTR ERV1 0 2438 1355 1149 209 37 34 chr4 56311599 56311925 -127976737 - pTR5 LTR ERV1 -1371 1067 741 * 300 301 35 18 chr4 56313203 56313316 -127975346 + MIR SINE MIR 76 190 -72 32 57 0 0 chr4 56313878 56313931 -127974731 + AT_rich Low_complexity Low_complexity 1 53 0 1959 154 0 0 chr4 56314548 56314859 -127973803 + AluSx SINE Alu 1 311 -1 223 284 12 0 chr4 56315806 56315887 -127972775 + CT-rich Low_complexity Low_complexity 1 82 0 566 258 48 30 chr4 56315902 56316069 -127972593 - MER5A DNA MER1_type -13 176 7 187 314 121 48 chr4 56317737 56317861 -127970801 - L2 LINE L2 0 3272 3140 481 308 68 0 chr4 56318260 56318406 -127970256 - L1MC3 LINE L1 -957 6828 6673 291 104 0 0 chr4 56318415 56318463 -127970199 + (TC)n Simple_repeat Simple_repeat 2 49 0 326 221 54 0 chr4 56318463 56318612 -127970050 + (TA)n Simple_repeat Simple_repeat 2 158 0 1613 259 49 76 chr4 56318626 56319416 -127969246 - L1MC3 LINE L1 -1170 6615 5847 768 229 24 65 chr4 56319472 56319759 -127968903 - L1MC3 LINE L1 -1194 4952 4680 23 0 0 0 chr4 56319942 56319965 -127968697 + AT_rich Low_complexity Low_complexity 1 23 0 2378 67 0 10 chr4 56320869 56321183 -127967479 - AluY SINE Alu 0 311 1 183 80 0 0 chr4 56324116 56324141 -127964521 + (TAGA)n Simple_repeat Simple_repeat 1 25 0 214 385 133 22 chr4 56324407 56324633 -127964029 + MIR SINE MIR 11 261 -1 7418 33 1 1 chr4 56326811 56328365 -127960297 + L1PA5 LINE L1 4584 6141 -13 197 304 51 0 chr4 56328887 56328966 -127959696 - MIR SINE MIR -61 201 119 393 360 0 7 chr4 56329054 56329201 -127959461 + MIR SINE MIR 107 252 -10 2251 137 31 14 chr4 56329576 56329934 -127958728 - THE1B LTR MaLR 0 364 1 10340 117 31 1 chr4 56329934 56331467 -127957195 - THE1B-int LTR MaLR 0 1580 1 1394 58 0 0 chr4 56331467 56331638 -127957024 - THE1B LTR MaLR 0 364 194 280 103 0 0 chr4 56331638 56331677 -127956985 - THE1B LTR MaLR -325 39 1 203 233 0 0 chr4 56331735 56331778 -127956884 - L2 LINE L2 -1 3271 3229 419 141 33 11 chr4 56332848 56332940 -127955722 - L1PB1 LINE L1 0 6151 6058 1771 132 15 11 chr4 56333167 56333254 -127955408 + AluSq SINE Alu 40 125 -188 273 29 0 0 chr4 56333254 56333288 -127955374 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1771 132 15 11 chr4 56333288 56333473 -127955189 + AluSq SINE Alu 125 313 0 1094 299 25 14 chr4 56334217 56334582 -127954080 - L1MCb LINE L1 -5098 947 579 561 268 196 53 chr4 56334616 56335071 -127953591 - L1MCb LINE L1 -5905 659 140 372 241 37 0 chr4 56335066 56335174 -127953488 - L1ME LINE L1 -734 5430 5319 * 1554 221 31 8 chr4 56335184 56335565 -127953097 + MLT1B LTR MaLR 1 390 0 1308 211 124 26 chr4 56335566 56335984 -127952678 + MLT1C LTR MaLR 9 467 0 32 0 0 0 chr4 56336246 56336278 -127952384 + AT_rich Low_complexity Low_complexity 1 32 0 1037 253 172 41 chr4 56336313 56337120 -127951542 - Charlie7 DNA MER1_type -275 2337 1425 3425 210 25 35 chr4 56337931 56338565 -127950097 - L1MB8 LINE L1 -10 6168 5529 369 0 0 0 chr4 56338565 56338606 -127950056 + (CA)n Simple_repeat Simple_repeat 2 42 0 3425 210 25 35 chr4 56338606 56338642 -127950020 - L1MB8 LINE L1 -649 5529 5494 1919 194 28 33 chr4 56338642 56339070 -127949592 + MSTB LTR MaLR 1 426 0 3425 210 25 35 chr4 56339070 56339256 -127949406 - L1MB8 LINE L1 -684 5494 5320 3977 177 44 9 chr4 56339267 56340372 -127948290 - L1MA4 LINE L1 -9 6162 4970 1986 97 62 81 chr4 56340374 56340440 -127948222 - THE1B LTR MaLR 0 364 298 1112 132 0 0 chr4 56340440 56340614 -127948048 + L1PA7 LINE L1 5981 6154 0 1986 97 62 81 chr4 56340614 56340918 -127947744 - THE1B LTR MaLR -66 298 1 7508 181 45 18 chr4 56340918 56342547 -127946115 - L1MA4 LINE L1 -1174 4972 3300 4087 218 35 6 chr4 56342547 56343534 -127945128 + L1MA4 LINE L1 2258 3273 -2873 2252 216 32 113 chr4 56343532 56344459 -127944203 - L1MB8 LINE L1 -814 5332 4499 * 3744 42 54 0 chr4 56344459 56344939 -127943723 - L1PA4 LINE L1 -8 6147 5642 2252 216 32 113 chr4 56344939 56345069 -127943593 - L1MB8 LINE L1 -1647 4499 4360 22 35 0 0 chr4 56345414 56345443 -127943219 + AT_rich Low_complexity Low_complexity 1 29 0 384 235 51 128 chr4 56345553 56345764 -127942898 + MLT1C LTR MaLR 1 194 -311 2154 113 7 0 chr4 56345764 56346065 -127942597 + AluSq SINE Alu 3 305 -8 384 235 51 128 chr4 56346065 56346087 -127942575 + MLT1C LTR MaLR 194 216 -289 514 165 35 0 chr4 56346087 56346202 -127942460 + GA-rich Low_complexity Low_complexity 2 120 0 515 323 21 11 chr4 56346276 56346462 -127942200 + MLT1C LTR MaLR 280 467 0 24 0 0 0 chr4 56347691 56347715 -127940947 + AT_rich Low_complexity Low_complexity 1 24 0 249 357 214 6 chr4 56347724 56347892 -127940770 + MIR SINE MIR 17 219 -43 230 267 0 0 chr4 56348037 56348097 -127940565 - HsTC2 DNA Tc2 -608 1290 1231 235 229 83 31 chr4 56348107 56348203 -127940459 - HsTC2 DNA Tc2 -1794 104 4 22 35 0 0 chr4 56348450 56348479 -127940183 + AT_rich Low_complexity Low_complexity 1 29 0 5373 148 58 75 chr4 56348771 56349194 -127939468 - Tigger3b DNA MER2_type -1803 1225 796 1927 123 31 3 chr4 56349194 56349486 -127939176 + AluY SINE Alu 1 300 -11 5373 148 58 75 chr4 56349486 56350308 -127938354 - Tigger3b DNA MER2_type -2232 796 1 2126 127 3 0 chr4 56350522 56350830 -127937832 - AluSq SINE Alu -4 309 1 305 299 82 38 chr4 56350886 56351204 -127937458 - L1ME LINE L1 -297 5824 5493 6992 151 13 5 chr4 56351415 56352580 -127936082 - HSMAR2 DNA Mariner -3 1299 126 180 0 0 0 chr4 56352692 56352712 -127935950 + (A)n Simple_repeat Simple_repeat 1 20 0 620 182 8 0 chr4 56352839 56352960 -127935702 - HSMAR2 DNA Mariner -1179 123 2 454 270 9 17 chr4 56353246 56353361 -127935301 - MER81 DNA DNA 0 114 1 3968 161 36 1 chr4 56353526 56354211 -127934451 + MER50 LTR ERV1 3 711 -23 1363 228 96 33 chr4 56355003 56355460 -127933202 - LTR29 LTR ERV1 0 622 137 12764 171 40 44 chr4 56355562 56358438 -127930224 - LTR29-int LTR ERV1 -2 6329 3467 296 299 14 7 chr4 56358624 56358768 -127929894 - LTR28-int LTR ERV1 -3113 1823 1679 715 222 81 35 chr4 56358777 56359038 -127929624 - LTR57-int LTR ERVL -3832 1511 1239 * 3131 154 15 62 chr4 56358985 56359666 -127928996 - LTR28-int LTR ERV1 -3194 3137 2489 2259 120 18 0 chr4 56359666 56359999 -127928663 + MER4D LTR ERV1 65 403 -469 858 255 62 62 chr4 56360001 56360369 -127928293 - LTR27 LTR ERV1 0 636 269 772 222 11 11 chr4 56360403 56360579 -127928083 - LTR28 LTR ERV1 -844 176 1 1134 167 61 5 chr4 56360580 56360778 -127927884 - LTR28-int LTR ERV1 0 5217 5009 * 11740 149 47 33 chr4 56360776 56364676 -127923986 - LTR28-int LTR ERV1 -462 5484 615 418 209 0 23 chr4 56364698 56364784 -127923878 - LTR28-int LTR ERV1 -885 3995 3912 * 4603 189 55 81 chr4 56364781 56364943 -127923719 - LTR28-int LTR ERV1 -425 4792 4627 240 59 0 0 chr4 56364943 56364977 -127923685 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4603 189 55 81 chr4 56364977 56366127 -127922535 - LTR28-int LTR ERV1 -590 4627 406 286 234 85 25 chr4 56366119 56366325 -127922337 - LTR28-int LTR ERV1 -6837 254 29 * 749 245 151 39 chr4 56366344 56366889 -127921773 - LTR28 LTR ERV1 0 636 2 * 3137 128 6 2 chr4 56366889 56367360 -127921302 + MER4D LTR ERV1 400 872 0 2220 119 33 0 chr4 56367360 56367692 -127920970 - LTR49 LTR ERV1 -247 348 6 22 0 0 0 chr4 56367883 56367905 -127920757 + AT_rich Low_complexity Low_complexity 1 22 0 1768 235 76 40 chr4 56368285 56368787 -127919875 + MER21B LTR ERV1 1 520 -343 1320 223 35 54 chr4 56368819 56369285 -127919377 - LTR56 LTR ERV1 0 445 9 1742 226 44 60 chr4 56369345 56369867 -127918795 + MLT2B3 LTR ERVL 1 515 -39 180 111 0 0 chr4 56369867 56369894 -127918768 + (TA)n Simple_repeat Simple_repeat 2 28 0 1742 226 44 60 chr4 56369894 56369934 -127918728 + MLT2B3 LTR ERVL 515 554 0 1957 244 71 33 chr4 56370058 56370604 -127918058 - MER21B LTR ERV1 -296 567 1 22 0 0 0 chr4 56370984 56371006 -127917656 + AT_rich Low_complexity Low_complexity 1 22 0 381 83 0 0 chr4 56371042 56371090 -127917572 + LTR49 LTR ERV1 165 212 -383 735 143 17 8 chr4 56371094 56371213 -127917449 + THE1B LTR MaLR 243 362 -2 10637 134 1 0 chr4 56371215 56372794 -127915868 + THE1B-int LTR MaLR 1 1580 0 2243 120 22 27 chr4 56372794 56373160 -127915502 + THE1B LTR MaLR 1 364 0 509 191 104 29 chr4 56373160 56373453 -127915209 + Charlie1 DNA MER1_type 2415 2757 -4 362 362 109 30 chr4 56373853 56374411 -127914251 - L2 LINE L2 -688 2626 2025 1404 128 10 0 chr4 56374433 56374636 -127914026 + AluSq SINE Alu 1 205 -108 603 153 34 0 chr4 56374738 56374856 -127913806 + AluSg/x SINE Alu 177 298 -11 292 294 73 66 chr4 56374858 56374994 -127913668 - L2 LINE L2 -1325 1989 1853 296 310 0 65 chr4 56375841 56375996 -127912666 - L2 LINE L2 -1 3312 3168 52 41 0 0 chr4 56376001 56376074 -127912588 + AT_rich Low_complexity Low_complexity 1 73 0 949 235 33 0 chr4 56376091 56376304 -127912358 - MER58A DNA MER1_type 0 224 5 276 208 0 0 chr4 56376334 56376387 -127912275 + MER74B LTR ERVL 1 53 -569 1188 266 33 22 chr4 56376448 56376813 -127911849 + MER74B LTR ERVL 193 561 -61 1047 313 23 6 chr4 56376900 56377245 -127911417 - LTR16B LTR ERVL 0 464 114 258 88 0 0 chr4 56377251 56377285 -127911377 - THE1B LTR MaLR -2 362 329 1810 148 63 31 chr4 56377286 56377637 -127911025 - THE1B LTR MaLR -2 362 1 10790 121 1 8 chr4 56377637 56379228 -127909434 - THE1B-int LTR MaLR 0 1580 1 1762 165 48 31 chr4 56379228 56379586 -127909076 - THE1B LTR MaLR 0 364 1 1503 211 22 22 chr4 56379802 56380157 -127908505 + MLT1A1 LTR MaLR 10 364 -1 362 352 97 18 chr4 56380162 56380429 -127908233 - L2 LINE L2 -275 3038 2751 959 215 25 138 chr4 56380450 56380855 -127907807 - MLT1A1 LTR MaLR -6 359 1 596 326 21 21 chr4 56380855 56381088 -127907574 - L2 LINE L2 -579 2735 2503 312 333 46 36 chr4 56381656 56381851 -127906811 - L2 LINE L2 -436 2878 2682 185 313 48 48 chr4 56382800 56382883 -127905779 - L2 LINE L2 0 3272 3190 2146 142 23 9 chr4 56383615 56383961 -127904701 - THE1B LTR MaLR -13 351 1 243 351 0 67 chr4 56384533 56384667 -127903995 + MIR SINE MIR 98 222 -40 21 0 0 0 chr4 56385348 56385369 -127903293 + AT_rich Low_complexity Low_complexity 1 21 0 285 313 77 52 chr4 56387349 56387582 -127901080 + L2 LINE L2 3024 3262 -51 37 18 0 18 chr4 56387769 56387798 -127900864 + AT_rich Low_complexity Low_complexity 1 30 -24 2004 134 3 0 chr4 56387798 56388089 -127900573 + AluSx SINE Alu 1 292 -20 37 18 0 18 chr4 56388089 56388114 -127900548 + AT_rich Low_complexity Low_complexity 30 54 0 203 274 98 0 chr4 56390788 56390839 -127897823 + L2 LINE L2 3197 3252 -20 616 248 13 0 chr4 56391597 56391746 -127896916 + MER97c DNA MER1_type? 29 179 -911 2215 117 0 0 chr4 56392923 56393221 -127895441 + AluSg SINE Alu 3 300 -10 425 279 73 55 chr4 56393417 56393582 -127895080 - L2 LINE L2 0 3313 3146 2485 312 89 39 chr4 56393582 56395284 -127893378 - L2 LINE L2 -13 3300 1198 327 369 83 23 chr4 56395484 56395701 -127892961 - MIR SINE MIR -20 242 13 380 302 101 8 chr4 56399409 56399538 -127889124 - MER5B DNA MER1_type 0 178 38 1426 70 0 87 chr4 56399539 56399797 -127888865 + AluSp SINE Alu 76 313 0 181 250 0 0 chr4 56399798 56399842 -127888820 + MER5B DNA MER1_type 135 178 0 2074 226 47 64 chr4 56400026 56400684 -127887978 + L1MD2 LINE L1 5686 6332 -27 570 232 48 36 chr4 56401282 56401450 -127887212 - L1ME3A LINE L1 0 6170 6001 323 263 86 34 chr4 56401507 56401682 -127886980 - L1ME3A LINE L1 -256 5914 5731 22 0 0 0 chr4 56402194 56402216 -127886446 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr4 56402414 56402440 -127886222 + AT_rich Low_complexity Low_complexity 1 26 0 198 0 0 0 chr4 56403200 56403222 -127885440 + (A)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr4 56404639 56404660 -127884002 + AT_rich Low_complexity Low_complexity 1 21 0 36 0 0 0 chr4 56404875 56404911 -127883751 + AT_rich Low_complexity Low_complexity 1 36 0 1751 148 25 4 chr4 56406906 56407205 -127881457 - AluSx SINE Alu 0 305 1 1895 112 20 7 chr4 56407356 56407650 -127881012 - L1PA12 LINE L1 -2 6166 5869 13226 214 53 24 chr4 56407650 56413269 -127875393 - L1PA12 LINE L1 -1737 5847 2 38 22 0 0 chr4 56413321 56413366 -127875296 + AT_rich Low_complexity Low_complexity 1 45 0 1362 205 32 49 chr4 56413582 56413928 -127874734 - MLT1A1 LTR MaLR -25 340 1 201 74 0 0 chr4 56413990 56414017 -127874645 + (TG)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr4 56414409 56414431 -127874231 + AT_rich Low_complexity Low_complexity 1 22 0 6806 102 29 20 chr4 56414597 56415634 -127873028 - MER11C LTR ERVK -25 1046 1 192 40 0 0 chr4 56416391 56416416 -127872246 + (TAA)n Simple_repeat Simple_repeat 3 27 0 260 226 16 0 chr4 56416503 56416565 -127872097 + Zaphod DNA AcHobo 3895 3957 -74 2315 202 64 21 chr4 56417164 56417915 -127870747 + L1MC2 LINE L1 5003 5771 -573 840 276 86 34 chr4 56417952 56418303 -127870359 + MLT2C2 LTR ERVL 83 451 -13 2614 180 26 12 chr4 56418305 56418873 -127869789 + L1MC2 LINE L1 5768 6343 -1 24 53 0 0 chr4 56418934 56418972 -127869690 + AT_rich Low_complexity Low_complexity 1 38 0 220 207 52 0 chr4 56419015 56419073 -127869589 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 440 303 86 107 chr4 56419404 56419730 -127868932 - MER115 DNA AcHobo -257 436 118 1068 223 18 115 chr4 56419730 56420129 -127868533 - MLT1A1 LTR MaLR 0 365 1 236 333 11 43 chr4 56420598 56420691 -127867971 - MER115 DNA AcHobo -447 246 157 1087 216 28 111 chr4 56420753 56421151 -127867511 - MLT1A1 LTR MaLR 0 365 1 27 49 0 0 chr4 56421526 56421567 -127867095 + AT_rich Low_complexity Low_complexity 1 41 0 2114 105 3 0 chr4 56421898 56422220 -127866442 - AluSp SINE Alu 0 323 1 211 164 33 16 chr4 56422254 56422315 -127866347 + CT-rich Low_complexity Low_complexity 1 62 0 23 33 0 0 chr4 56422611 56422641 -127866021 + AT_rich Low_complexity Low_complexity 1 30 0 582 237 135 13 chr4 56423603 56423759 -127864903 + MER45A DNA AcHobo 1 175 -3 857 216 69 75 chr4 56423851 56424262 -127864400 - MLT1A1 LTR MaLR 0 365 1 5771 242 87 23 chr4 56424262 56425893 -127862769 - MLT1A1-int LTR MaLR 0 1735 2 805 224 51 100 chr4 56425895 56426292 -127862370 - MLT1A1 LTR MaLR -1 395 20 920 207 80 141 chr4 56426304 56426693 -127861969 + MLT1A1 LTR MaLR 1 426 0 255 103 0 0 chr4 56427318 56427357 -127861305 + (GGA)n Simple_repeat Simple_repeat 3 41 0 363 206 11 65 chr4 56427755 56427847 -127860815 + MIR SINE MIR 78 164 -98 21 36 0 0 chr4 56427914 56427942 -127860720 + AT_rich Low_complexity Low_complexity 1 28 0 248 229 96 60 chr4 56428903 56428986 -127859676 + L2 LINE L2 3225 3310 -3 222 254 109 61 chr4 56429659 56429824 -127858838 - MIR SINE MIR 0 262 90 5523 116 48 0 chr4 56430307 56431178 -127857484 + L1PA14 LINE L1 5233 6144 -17 705 247 50 16 chr4 56431593 56431775 -127856887 - MER5A DNA MER1_type 0 189 2 461 343 17 11 chr4 56431790 56431971 -127856691 + MER5A DNA MER1_type 8 189 0 2324 72 3 16 chr4 56432266 56432573 -127856089 + AluSq SINE Alu 1 303 -10 186 43 0 0 chr4 56432652 56432675 -127855987 + (A)n Simple_repeat Simple_repeat 1 23 0 755 316 118 51 chr4 56434610 56434983 -127853679 + L2 LINE L2 14 411 -2903 714 291 117 72 chr4 56435132 56435712 -127852950 + MER21B LTR ERV1 109 714 -149 996 294 74 71 chr4 56435712 56436317 -127852345 + L2 LINE L2 403 1009 -2305 252 250 103 0 chr4 56436318 56436386 -127852276 + L2 LINE L2 1345 1419 -1895 238 279 15 0 chr4 56441472 56441540 -127847122 + CT-rich Low_complexity Low_complexity 4 72 0 209 304 63 0 chr4 56441910 56441989 -127846673 - MIR SINE MIR -176 86 3 256 48 32 48 chr4 56442314 56442376 -127846286 + (TA)n Simple_repeat Simple_repeat 1 61 0 202 244 0 0 chr4 56442396 56442441 -127846221 + (TA)n Simple_repeat Simple_repeat 2 46 0 347 238 99 38 chr4 56442524 56442750 -127845912 - L1M3 LINE L1 -618 5553 5309 561 331 103 24 chr4 56442764 56443181 -127845481 - L1M3 LINE L1 -873 5273 4824 258 314 0 12 chr4 56443298 56443384 -127845278 + CT-rich Low_complexity Low_complexity 1 85 0 543 287 85 59 chr4 56443436 56443896 -127844766 - L1M3 LINE L1 -1504 4642 4171 225 276 0 0 chr4 56443912 56443970 -127844692 - L1P LINE L1 -2031 4115 4058 21 0 0 0 chr4 56443995 56444016 -127844646 + AT_rich Low_complexity Low_complexity 1 21 0 690 246 120 47 chr4 56444112 56444182 -127844480 + MLT1C LTR MaLR 1 64 -403 2909 79 2 5 chr4 56444182 56444586 -127844076 - L1PA8 LINE L1 -2 6170 5768 690 246 120 47 chr4 56444586 56444947 -127843715 + MLT1C LTR MaLR 64 467 0 649 314 100 41 chr4 56445679 56445735 -127842927 + L2 LINE L2 2135 2186 -1128 1583 203 41 22 chr4 56445735 56446099 -127842563 + MLT1A2 LTR MaLR 4 374 0 649 314 100 41 chr4 56446099 56446533 -127842129 + L2 LINE L2 2186 2654 -660 1754 185 131 13 chr4 56446561 56446944 -127841718 + MSTA LTR MaLR 1 428 0 317 305 127 52 chr4 56447064 56447128 -127841534 + L2 LINE L2 2824 2882 -431 207 0 0 0 chr4 56447128 56447151 -127841511 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 317 305 127 52 chr4 56447151 56447394 -127841268 + L2 LINE L2 2882 3154 -159 871 311 116 29 chr4 56447509 56448020 -127840642 + MLT1H1 LTR MaLR 1 555 0 23 0 0 0 chr4 56448214 56448237 -127840425 + AT_rich Low_complexity Low_complexity 1 23 0 1235 236 6 70 chr4 56448316 56448672 -127839990 - MLT1A1 LTR MaLR 0 365 33 1304 76 0 0 chr4 56448725 56448922 -127839740 + L1PA8 LINE L1 6000 6196 0 35 71 0 0 chr4 56449189 56449259 -127839403 + AT_rich Low_complexity Low_complexity 1 70 0 413 308 138 0 chr4 56449317 56449512 -127839150 + L1MCa LINE L1 1277 1498 -4928 2050 108 7 0 chr4 56449566 56449872 -127838790 - AluSg SINE Alu 0 310 3 314 278 213 28 chr4 56449881 56450097 -127838565 + L1MCa LINE L1 1834 2089 -4518 1706 226 187 18 chr4 56450379 56450531 -127838131 + MLT2F LTR ERVL 1 126 -537 198 0 0 0 chr4 56450531 56450553 -127838109 + (CA)n Simple_repeat Simple_repeat 2 23 0 1706 226 187 18 chr4 56450553 56450961 -127837701 + MLT2F LTR ERVL 126 656 -7 1226 236 49 27 chr4 56451016 56451438 -127837224 + L1MC4a LINE L1 6174 6623 -1162 5177 112 12 23 chr4 56451530 56452364 -127836298 - L1PB2 LINE L1 0 6151 5327 31832 117 25 20 chr4 56452892 56459012 -127829650 + L1PA7 LINE L1 2 6147 -7 1056 221 92 37 chr4 56459177 56459503 -127829159 + MER2 DNA MER2_type 1 344 0 879 173 0 0 chr4 56459850 56459989 -127828673 + Tigger1 DNA MER2_type 1 139 -2279 1173 116 55 10 chr4 56459995 56460194 -127828468 + Tigger1 DNA MER2_type 2211 2418 0 3398 20 0 0 chr4 56460419 56460821 -127827841 - L1HS LINE L1 -1534 4612 4211 * 7845 18 4 0 chr4 56460819 56462358 -127826304 + L1HS LINE L1 4610 6155 0 295 340 60 45 chr4 56462829 56463029 -127825633 + LTR16C LTR ERVL 289 491 0 23 54 0 0 chr4 56465147 56465184 -127823478 + AT_rich Low_complexity Low_complexity 1 37 0 31 66 0 41 chr4 56465626 56465702 -127822960 + AT_rich Low_complexity Low_complexity 1 72 -44 2252 96 3 13 chr4 56465702 56466014 -127822648 + AluSp SINE Alu 3 311 -2 31 66 0 41 chr4 56466014 56466058 -127822604 + AT_rich Low_complexity Low_complexity 72 116 0 247 322 25 17 chr4 56466058 56466176 -127822486 - L1MC4 LINE L1 -1 8041 7923 534 31 0 0 chr4 56466208 56466272 -127822390 + (TAGA)n Simple_repeat Simple_repeat 1 64 0 685 281 26 33 chr4 56466296 56466598 -127822064 - L1MC4 LINE L1 -124 7918 7619 252 267 68 27 chr4 56466589 56466741 -127821921 - L1MCb LINE L1 -5369 1093 936 * 364 243 84 0 chr4 56466856 56466963 -127821699 + MLT1E1 LTR MaLR 48 163 -430 827 286 152 7 chr4 56466964 56467337 -127821325 + MLT1E1 LTR MaLR 119 654 0 1799 242 41 82 chr4 56467762 56467827 -127820835 - L1MCb LINE L1 -5209 836 770 1767 145 115 60 chr4 56467827 56468228 -127820434 - MSTA LTR MaLR -1 427 5 1799 242 41 82 chr4 56468228 56468987 -127819675 - L1MCb LINE L1 -5275 770 46 21 0 0 0 chr4 56469118 56469139 -127819523 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 56470294 56470316 -127818346 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 56470452 56470477 -127818185 + AT_rich Low_complexity Low_complexity 1 25 0 229 203 51 0 chr4 56471331 56471390 -127817272 + GA-rich Low_complexity Low_complexity 3 64 0 281 263 153 42 chr4 56472058 56472176 -127816486 - L2 LINE L2 -17 3255 3125 461 264 215 3 chr4 56472191 56472399 -127816263 - MIR SINE MIR 0 262 14 2455 185 79 36 chr4 56473139 56473176 -127815486 - MLT2B3 LTR ERVL 0 554 520 206 62 31 0 chr4 56473176 56473208 -127815454 + (TAGA)n Simple_repeat Simple_repeat 4 36 0 2455 185 79 36 chr4 56473208 56473701 -127814961 - MLT2B3 LTR ERVL -34 520 1 555 144 19 29 chr4 56473714 56473818 -127814844 - MER76 LTR ERV 0 688 586 5698 131 49 15 chr4 56473839 56474854 -127813808 + Tigger3b DNA MER2_type 1 1050 -181 278 172 86 35 chr4 56474847 56474905 -127813757 - AluSp SINE Alu -118 185 125 * 666 223 0 0 chr4 56474906 56475036 -127813626 - AluJo/FLAM SINE Alu -172 130 1 822 217 6 28 chr4 56475039 56475219 -127813443 - MER76 LTR ERV -512 176 1 190 353 193 8 chr4 56475782 56476020 -127812642 - L3 LINE CR1 -297 1280 999 22 35 0 0 chr4 56476926 56476955 -127811707 + AT_rich Low_complexity Low_complexity 1 29 0 397 299 15 0 chr4 56477145 56477282 -127811380 + MIR SINE MIR 124 262 0 1943 120 30 3 chr4 56478874 56479173 -127809489 + AluSx SINE Alu 5 311 -1 211 382 36 0 chr4 56479773 56479883 -127808779 + MIR3 SINE MIR 45 158 -50 2052 102 11 0 chr4 56480555 56480829 -127807833 + AluSc SINE Alu 1 277 -32 25 0 0 0 chr4 56480861 56480886 -127807776 + AT_rich Low_complexity Low_complexity 1 25 0 521 272 26 72 chr4 56481691 56481886 -127806776 - LTR16C LTR ERVL -9 482 297 428 266 148 27 chr4 56481981 56482237 -127806425 + L1ME3A LINE L1 5884 6170 0 620 341 46 0 chr4 56482366 56482691 -127805971 - HAL1 LINE L1 -585 1922 1583 630 285 66 20 chr4 56482741 56483046 -127805616 - L1ME2 LINE L1 -28 6136 5818 367 141 16 0 chr4 56483077 56483141 -127805521 - MER31B LTR ERV1 -401 65 1 21 0 0 0 chr4 56483736 56483757 -127804905 + AT_rich Low_complexity Low_complexity 1 21 0 390 340 143 26 chr4 56484563 56484942 -127803720 - MLT1K LTR MaLR -74 514 92 241 323 0 0 chr4 56485250 56485343 -127803319 + (TATATG)n Simple_repeat Simple_repeat 5 97 0 1364 276 152 18 chr4 56486548 56487062 -127801600 - MLT1G1 LTR MaLR -9 586 4 1644 195 47 36 chr4 56487591 56487950 -127800712 - MLT1A1 LTR MaLR 0 365 3 29 70 0 0 chr4 56488596 56488653 -127800009 + AT_rich Low_complexity Low_complexity 1 57 0 22 35 0 0 chr4 56489023 56489052 -127799610 + AT_rich Low_complexity Low_complexity 1 29 0 32 26 0 0 chr4 56489085 56489124 -127799538 + AT_rich Low_complexity Low_complexity 1 39 0 287 296 151 17 chr4 56489263 56489435 -127799227 + MLT1I LTR MaLR 41 235 -174 30 27 0 0 chr4 56490796 56490833 -127797829 + AT_rich Low_complexity Low_complexity 1 37 0 2612 260 80 27 chr4 56491068 56492236 -127796426 + Zaphod DNA AcHobo 110 1338 -2693 23 86 0 0 chr4 56492345 56492403 -127796259 + AT_rich Low_complexity Low_complexity 1 58 0 1690 263 109 43 chr4 56492428 56493478 -127795184 + Zaphod DNA AcHobo 2013 3132 -899 537 0 41 0 chr4 56493565 56493638 -127795024 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 267 243 0 0 chr4 56493640 56493710 -127794952 + Zaphod DNA AcHobo 3305 3374 -657 255 175 0 0 chr4 56493948 56494005 -127794657 + CT-rich Low_complexity Low_complexity 2 58 0 181 204 35 9 chr4 56494025 56494138 -127794524 + (TA)n Simple_repeat Simple_repeat 2 117 0 309 291 60 0 chr4 56494146 56494263 -127794399 + MER110 LTR ERV1 363 486 -5 829 250 193 21 chr4 56494296 56494768 -127793894 + Zaphod DNA AcHobo 3402 3954 -77 2492 65 0 0 chr4 56495321 56495631 -127793031 - AluY SINE Alu -1 310 1 24 32 0 0 chr4 56495641 56495672 -127792990 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr4 56496084 56496110 -127792552 + AT_rich Low_complexity Low_complexity 1 26 0 1755 254 103 12 chr4 56496359 56496852 -127791810 - MLT1F LTR MaLR -4 538 1 557 279 48 48 chr4 56497639 56497933 -127790729 + L1MCb LINE L1 9 302 -5743 1103 268 83 63 chr4 56498373 56498852 -127789810 + L1MCb LINE L1 573 1041 -5477 1302 223 36 40 chr4 56498852 56499297 -127789365 + LTR56 LTR ERV1 3 445 0 1103 268 83 63 chr4 56499297 56499772 -127788890 + L1MCb LINE L1 1041 1550 -4968 207 0 0 0 chr4 56499772 56499795 -127788867 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1103 268 83 63 chr4 56499795 56499916 -127788746 + L1MCb LINE L1 1550 1667 -4851 2045 175 33 34 chr4 56499940 56500483 -127788179 + MLT2A2 LTR ERVL 3 546 -8 806 281 119 22 chr4 56500585 56501030 -127787632 + L1MCb LINE L1 1871 2358 -4206 1589 218 75 25 chr4 56501035 56501475 -127787187 + MLT1C LTR MaLR 6 467 0 817 268 39 20 chr4 56501519 56501911 -127786751 + L1MCb LINE L1 2502 2865 -3699 1043 76 0 0 chr4 56501915 56502046 -127786616 - MER11B LTR ERVK 0 1236 1106 4114 206 34 12 chr4 56502262 56503090 -127785572 + L1MA2 LINE L1 16 861 -6704 8683 173 32 39 chr4 56503094 56504220 -127784442 + L1MA2 LINE L1 4706 5839 -1884 1863 130 4 0 chr4 56504220 56504474 -127784188 - AluSg SINE Alu -55 255 1 8683 173 32 39 chr4 56504474 56504601 -127784061 + L1MA2 LINE L1 5839 5965 -1758 2204 127 3 0 chr4 56504601 56504909 -127783753 + AluSx SINE Alu 1 309 -3 8683 173 32 39 chr4 56504909 56506697 -127781965 + L1MA2 LINE L1 5965 7723 0 501 350 89 38 chr4 56506908 56507279 -127781383 + MLT1J LTR MaLR 55 444 -67 186 200 9 19 chr4 56507370 56507475 -127781187 + (TA)n Simple_repeat Simple_repeat 1 104 0 942 195 0 0 chr4 56508375 56508544 -127780118 + FRAM SINE Alu 1 167 -9 194 232 18 18 chr4 56509350 56509406 -127779256 + MIR SINE MIR 124 179 -83 474 315 136 4 chr4 56509518 56509797 -127778865 + Charlie2 DNA MER1_type 7 322 -2460 894 201 25 5 chr4 56509803 56510007 -127778655 + Charlie2 DNA MER1_type 1857 2064 -798 50 71 0 0 chr4 56510099 56510198 -127778464 + AT_rich Low_complexity Low_complexity 1 99 0 35 78 0 0 chr4 56510359 56510436 -127778226 + AT_rich Low_complexity Low_complexity 1 77 0 22 0 0 0 chr4 56510524 56510546 -127778116 + AT_rich Low_complexity Low_complexity 1 22 0 2359 71 0 16 chr4 56510650 56510958 -127777704 + AluY SINE Alu 1 303 -8 718 181 0 8 chr4 56511110 56511237 -127777425 - AluJo SINE Alu -26 286 161 631 216 0 0 chr4 56511230 56511346 -127777316 - AluJo SINE Alu -196 116 1 * 1008 210 52 148 chr4 56511453 56511911 -127776751 - MLT2D LTR ERVL 0 414 1 23 33 0 0 chr4 56512042 56512072 -127776590 + AT_rich Low_complexity Low_complexity 1 30 0 360 293 41 27 chr4 56513226 56513373 -127775289 - L2 LINE L2 0 3313 3165 297 75 0 0 chr4 56513558 56513598 -127775064 + (TG)n Simple_repeat Simple_repeat 2 41 0 431 364 60 14 chr4 56513644 56513861 -127774801 - L2 LINE L2 -249 3064 2838 444 296 56 47 chr4 56514047 56514280 -127774382 + MLT1J2 LTR MaLR 216 450 0 402 278 26 26 chr4 56514425 56514576 -127774086 + L2 LINE L2 3142 3292 -21 468 117 0 0 chr4 56515648 56515725 -127772937 + (GGGGA)n Simple_repeat Simple_repeat 2 78 0 24 0 0 0 chr4 56515857 56515881 -127772781 + AT_rich Low_complexity Low_complexity 1 24 0 347 370 87 14 chr4 56516355 56516574 -127772088 + MIR SINE MIR 28 262 0 180 311 0 0 chr4 56516976 56517021 -127771641 + MIR SINE MIR 191 235 -27 218 191 24 0 chr4 56517025 56517067 -127771595 + (CA)n Simple_repeat Simple_repeat 2 44 0 2271 151 56 7 chr4 56517166 56517578 -127771084 - MSTB1 LTR MaLR 0 432 1 22 35 0 0 chr4 56518071 56518100 -127770562 + AT_rich Low_complexity Low_complexity 1 29 0 257 311 171 18 chr4 56518603 56518889 -127769773 + L2 LINE L2 1465 1794 -1520 716 299 103 40 chr4 56518890 56519423 -127769239 + L2 LINE L2 2713 3280 -33 1761 189 111 0 chr4 56519595 56519779 -127768883 + MSTA LTR MaLR 1 163 -265 207 0 0 0 chr4 56519779 56519802 -127768860 + (TC)n Simple_repeat Simple_repeat 2 24 0 1761 189 111 0 chr4 56519802 56519987 -127768675 + MSTA LTR MaLR 163 411 -17 2084 134 0 13 chr4 56520029 56520343 -127768319 - AluSg SINE Alu 0 310 1 27 0 0 0 chr4 56520450 56520477 -127768185 + AT_rich Low_complexity Low_complexity 1 27 0 975 276 66 18 chr4 56520690 56521092 -127767570 + MLT1E LTR MaLR 75 589 -4 276 30 0 0 chr4 56522032 56522065 -127766597 + (TG)n Simple_repeat Simple_repeat 2 34 0 32 57 0 0 chr4 56522854 56522907 -127765755 + AT_rich Low_complexity Low_complexity 1 53 0 405 286 63 93 chr4 56523969 56524238 -127764424 - MIR SINE MIR 0 262 2 431 285 64 41 chr4 56524326 56524498 -127764164 + MER5A DNA MER1_type 14 189 0 183 256 0 23 chr4 56524507 56524550 -127764112 + MER5B DNA MER1_type 2 43 -135 368 244 22 11 chr4 56524634 56524724 -127763938 + MER5B DNA MER1_type 86 176 -2 595 283 56 6 chr4 56524741 56524921 -127763741 - MER5A DNA MER1_type 0 189 1 295 390 54 19 chr4 56524988 56525193 -127763469 + MIR SINE MIR 21 232 -30 23 0 0 0 chr4 56525479 56525502 -127763160 + AT_rich Low_complexity Low_complexity 1 23 0 256 376 86 8 chr4 56525739 56525856 -127762806 + L2 LINE L2 3145 3270 -2 2198 99 3 0 chr4 56525986 56526279 -127762383 + AluSp SINE Alu 1 294 -19 258 106 0 0 chr4 56526279 56526326 -127762336 + (TA)n Simple_repeat Simple_repeat 2 48 0 279 349 85 16 chr4 56526946 56527135 -127761527 + MIR SINE MIR 32 233 -29 955 276 200 31 chr4 56528407 56529152 -127759510 - L2 LINE L2 0 3313 2459 202 185 31 46 chr4 56529330 56529395 -127759267 + (CTTTA)n Simple_repeat Simple_repeat 2 65 0 251 311 19 124 chr4 56529507 56529774 -127758888 - MIR SINE MIR -16 246 8 195 167 0 0 chr4 56530011 56530053 -127758609 + (TG)n Simple_repeat Simple_repeat 2 43 0 1678 142 113 0 chr4 56531419 56531694 -127756968 + AluSx SINE Alu 5 310 -2 1371 203 0 27 chr4 56531987 56532283 -127756379 - AluJo SINE Alu -2 310 23 260 230 14 0 chr4 56532301 56532375 -127756287 + (TA)n Simple_repeat Simple_repeat 2 76 0 228 67 0 0 chr4 56532376 56532406 -127756256 + (CA)n Simple_repeat Simple_repeat 1 30 0 1435 193 40 30 chr4 56532419 56532720 -127755942 + AluJo SINE Alu 1 304 -8 207 186 0 0 chr4 56532818 56532861 -127755801 + (TA)n Simple_repeat Simple_repeat 2 44 0 5819 136 83 33 chr4 56532874 56533360 -127755302 + Tigger3b DNA MER2_type 5 465 -2563 2339 63 0 13 chr4 56533360 56533662 -127755000 - AluY SINE Alu -13 298 1 5819 136 83 33 chr4 56533662 56533770 -127754892 + Tigger3b DNA MER2_type 465 566 -2462 1579 200 3 16 chr4 56533770 56534075 -127754587 + AluJb SINE Alu 1 301 -11 5819 136 83 33 chr4 56534075 56534128 -127754534 + Tigger3b DNA MER2_type 566 615 -2413 3826 77 2 0 chr4 56534128 56534635 -127754027 - L1PA8 LINE L1 -4 6168 5661 5819 136 83 33 chr4 56534635 56535144 -127753518 + Tigger3b DNA MER2_type 615 1221 -10 21 82 0 0 chr4 56536212 56536261 -127752401 + AT_rich Low_complexity Low_complexity 1 49 0 339 281 39 23 chr4 56536501 56536629 -127752033 + Charlie8 DNA MER1_type 107 236 -2181 352 222 40 0 chr4 56536863 56536962 -127751700 - L1MC4 LINE L1 -203 7839 7737 498 353 68 27 chr4 56536970 56537409 -127751253 - L1MDa LINE L1 -4746 1469 1013 232 269 58 12 chr4 56537412 56537665 -127750997 - L1MDa LINE L1 -5226 979 743 192 328 164 9 chr4 56537680 56537796 -127750866 - L2 LINE L2 -300 3013 2880 1186 237 109 16 chr4 56538743 56539055 -127749607 - MER58B DNA MER1_type 0 341 1 2082 118 7 0 chr4 56539585 56539882 -127748780 + AluSq SINE Alu 1 299 -14 639 294 18 78 chr4 56540087 56540420 -127748242 + MLT1I LTR MaLR 97 409 0 22 0 0 0 chr4 56540760 56540782 -127747880 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr4 56541342 56541377 -127747285 + AT_rich Low_complexity Low_complexity 1 35 0 1276 213 8 0 chr4 56541531 56541770 -127746892 + AluJb SINE Alu 1 241 -71 5067 130 3 6 chr4 56541793 56542570 -127746092 + LTR17 LTR ERV1 7 780 0 303 179 30 15 chr4 56542596 56542663 -127745999 + MER61-int LTR ERV1 754 821 -6995 1925 127 118 0 chr4 56542771 56543103 -127745559 + MER51B LTR ERV1 1 371 -6 8794 137 105 71 chr4 56543115 56543200 -127745462 + MER51B-int LTR ERV1 1 82 -7734 216 0 0 0 chr4 56543200 56543224 -127745438 + (TC)n Simple_repeat Simple_repeat 1 24 0 8794 137 105 71 chr4 56543224 56544912 -127743750 + MER51B-int LTR ERV1 82 2013 -5803 6181 63 2 13 chr4 56544912 56545700 -127742962 + LTR17 LTR ERV1 1 780 0 8794 137 105 71 chr4 56545700 56547062 -127741600 + MER51B-int LTR ERV1 2013 3327 -4489 2843 183 51 17 chr4 56547035 56547679 -127740983 + MER61-int LTR ERV1 1474 2139 -3078 * 1609 114 43 8 chr4 56547666 56547961 -127740701 + MER61-int LTR ERV1 2336 5301 -2117 * 252 241 35 0 chr4 56548191 56548249 -127740413 - L1MCa LINE L1 -4773 1653 1594 30 0 0 0 chr4 56548667 56548697 -127739965 + AT_rich Low_complexity Low_complexity 1 30 0 1247 205 58 45 chr4 56549394 56550047 -127738615 - LTR48B LTR ERV1 0 644 4 219 174 22 0 chr4 56550395 56550441 -127738221 + GA-rich Low_complexity Low_complexity 1 47 0 808 67 0 0 chr4 56550551 56550655 -127738007 - AluY SINE Alu -207 104 1 1780 94 0 0 chr4 56550684 56550952 -127737710 + AluSx SINE Alu 51 318 0 1918 138 0 52 chr4 56552426 56552753 -127735909 - AluSx SINE Alu -2 310 1 6374 116 38 6 chr4 56553175 56554563 -127734099 + MER51B-int LTR ERV1 5620 7147 -390 591 156 10 0 chr4 56554563 56554659 -127734003 + LTR54B LTR ERV1 3 99 -399 2279 132 20 35 chr4 56554659 56555053 -127733609 + MER51B-int LTR ERV1 7428 7815 -1 2016 106 89 42 chr4 56555055 56555308 -127733354 + MER51B LTR ERV1 1 277 -100 2177 117 3 0 chr4 56555308 56555606 -127733056 - AluSx SINE Alu -13 299 1 2016 106 89 42 chr4 56555606 56555712 -127732950 + MER51B LTR ERV1 277 377 0 228 100 0 0 chr4 56556507 56556547 -127732115 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 21 0 0 0 chr4 56556596 56556617 -127732045 + AT_rich Low_complexity Low_complexity 1 21 0 6267 196 31 20 chr4 56556847 56558165 -127730497 + L1MCa LINE L1 20 1351 -5075 965 264 59 48 chr4 56558169 56558693 -127729969 + L1MCa LINE L1 2252 2739 -3687 771 283 57 14 chr4 56558691 56559044 -127729618 + L1MCa LINE L1 3704 4071 -2355 * 553 103 81 0 chr4 56559043 56559130 -127729532 + L1MC1 LINE L1 5739 5832 -501 * 23 0 0 0 chr4 56559911 56559934 -127728728 + AT_rich Low_complexity Low_complexity 1 23 0 23 78 0 0 chr4 56559966 56560017 -127728645 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr4 56561026 56561049 -127727613 + AT_rich Low_complexity Low_complexity 1 23 0 27 49 0 0 chr4 56562025 56562066 -127726596 + AT_rich Low_complexity Low_complexity 1 41 0 935 244 109 26 chr4 56562488 56562931 -127725731 - MLT1E LTR MaLR -30 563 4 26 64 0 0 chr4 56563529 56563576 -127725086 + AT_rich Low_complexity Low_complexity 1 47 0 32 43 0 0 chr4 56563654 56563700 -127724962 + AT_rich Low_complexity Low_complexity 1 46 0 37 52 0 0 chr4 56563768 56563826 -127724836 + AT_rich Low_complexity Low_complexity 1 58 0 2223 89 7 0 chr4 56564297 56564589 -127724073 - AluSx SINE Alu -18 294 1 21 57 0 0 chr4 56564589 56564624 -127724038 + AT_rich Low_complexity Low_complexity 1 35 0 820 268 71 24 chr4 56565778 56566134 -127722528 + L1MB8 LINE L1 5808 6178 0 25 31 0 0 chr4 56566513 56566545 -127722117 + AT_rich Low_complexity Low_complexity 1 32 0 33 0 0 0 chr4 56567218 56567251 -127721411 + AT_rich Low_complexity Low_complexity 1 33 0 400 262 8 0 chr4 56567392 56567514 -127721148 + MER53 DNA DNA 2 124 -65 615 143 56 0 chr4 56567524 56567650 -127721012 - MER53 DNA DNA -44 145 13 1100 165 117 102 chr4 56568173 56568664 -127719998 + MER4A LTR ERV1 2 443 -22 22 0 0 0 chr4 56568985 56569007 -127719655 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 56569457 56569480 -127719182 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr4 56570668 56570689 -127717973 + (A)n Simple_repeat Simple_repeat 1 21 0 6488 124 58 85 chr4 56571619 56573688 -127714974 - HERV17 LTR ERV1 0 8397 6274 2372 71 7 10 chr4 56573688 56573998 -127714664 - AluY SINE Alu 0 311 3 6488 124 58 85 chr4 56573998 56574318 -127714344 - HERV17 LTR ERV1 -2123 6274 142 574 127 35 81 chr4 56574316 56574507 -127714155 - HERV17 LTR ERV1 -7726 900 719 33974 120 48 41 chr4 56574507 56581304 -127707358 - HERV17 LTR ERV1 0 2438 17 374 323 140 36 chr4 56581405 56581770 -127706892 - L2 LINE L2 -343 2971 2569 260 277 130 43 chr4 56582160 56582344 -127706318 + MIR SINE MIR 7 206 -56 * 602 266 28 24 chr4 56582303 56582483 -127706179 - MIR SINE MIR -44 218 38 4249 165 61 14 chr4 56583202 56583991 -127704671 + LTR1B LTR ERV1 1 826 0 23 54 0 0 chr4 56584073 56584110 -127704552 + AT_rich Low_complexity Low_complexity 1 37 0 1315 208 4 4 chr4 56584605 56584860 -127703802 + AluJb SINE Alu 43 297 -15 189 195 0 0 chr4 56585021 56585062 -127703600 + (TA)n Simple_repeat Simple_repeat 1 41 0 274 369 56 6 chr4 56585191 56585370 -127703292 - MIR SINE MIR -9 253 66 24 85 0 0 chr4 56585827 56585886 -127702776 + AT_rich Low_complexity Low_complexity 1 59 0 199 179 36 27 chr4 56588422 56588534 -127700128 + (TA)n Simple_repeat Simple_repeat 1 113 0 24 0 0 0 chr4 56588896 56588920 -127699742 + AT_rich Low_complexity Low_complexity 1 24 0 2533 55 0 3 chr4 56589212 56589521 -127699141 + AluY SINE Alu 1 308 -3 25 65 0 0 chr4 56590684 56590730 -127697932 + AT_rich Low_complexity Low_complexity 1 46 0 222 365 55 20 chr4 56591576 56591776 -127696886 + L2 LINE L2 2037 2243 -1071 542 364 87 40 chr4 56591781 56592591 -127696071 + L2 LINE L2 2459 3313 0 255 284 0 25 chr4 56592999 56593080 -127695582 + GA-rich Low_complexity Low_complexity 1 79 0 29 28 0 0 chr4 56593473 56593509 -127695153 + AT_rich Low_complexity Low_complexity 1 36 0 300 256 128 16 chr4 56593577 56593702 -127694960 + MIR SINE MIR 124 262 0 23 0 0 0 chr4 56594271 56594294 -127694368 + AT_rich Low_complexity Low_complexity 1 23 0 1956 149 14 0 chr4 56594788 56595083 -127693579 + AluSx SINE Alu 1 299 -13 372 78 0 0 chr4 56595326 56595377 -127693285 + MADE1 DNA Mariner 1 51 -29 2110 133 0 0 chr4 56596306 56596606 -127692056 + AluSc SINE Alu 1 300 -9 207 273 182 0 chr4 56596708 56596796 -127691866 - L2 LINE L2 -52 3261 3158 483 133 13 0 chr4 56596823 56596898 -127691764 + AluJo SINE Alu 11 86 -226 4706 72 7 3 chr4 56596898 56597923 -127690739 + MER11A LTR ERVK 1 1266 0 1230 167 0 31 chr4 56597923 56598151 -127690511 + AluJo SINE Alu 81 301 -11 1108 291 30 77 chr4 56598163 56599055 -127689607 - L2 LINE L2 -148 3165 2325 723 290 73 4 chr4 56599238 56599483 -127689179 - MER46C DNA MER2_type -7 331 70 226 217 0 0 chr4 56600212 56600258 -127688404 - L1MC1 LINE L1 -272 6061 6016 2239 129 0 19 chr4 56600260 56600623 -127688039 + L1PA16 LINE L1 5802 6157 -9 901 340 129 17 chr4 56600925 56601070 -127687592 - L2 LINE L2 -17 3296 3169 225 0 0 0 chr4 56601070 56601095 -127687567 + (CAA)n Simple_repeat Simple_repeat 3 27 0 901 340 129 17 chr4 56601095 56601756 -127686906 - L2 LINE L2 -144 3169 2399 207 100 0 0 chr4 56601960 56601990 -127686672 + (CG)n Simple_repeat Simple_repeat 2 31 0 23 0 0 0 chr4 56602426 56602449 -127686213 + AT_rich Low_complexity Low_complexity 1 23 0 1605 201 10 16 chr4 56602940 56603248 -127685414 + AluSx SINE Alu 1 306 -6 370 66 0 33 chr4 56603366 56603427 -127685235 + L1MA1 LINE L1 6244 6302 0 1496 266 37 34 chr4 56604121 56604688 -127683974 - L1ME2 LINE L1 -141 6023 5455 454 226 0 0 chr4 56604696 56604798 -127683864 - MLT1D LTR MaLR 0 505 404 377 23 0 0 chr4 56604798 56604841 -127683821 + (T)n Simple_repeat Simple_repeat 1 43 0 245 291 34 60 chr4 56606160 56606233 -127682429 + L2 LINE L2 3200 3270 -43 1717 166 54 35 chr4 56606233 56606601 -127682061 - THE1C LTR MaLR 0 375 1 245 291 34 60 chr4 56606601 56606644 -127682018 + L2 LINE L2 3270 3313 0 26 50 0 0 chr4 56608013 56608053 -127680609 + AT_rich Low_complexity Low_complexity 1 40 0 221 271 0 0 chr4 56608608 56608694 -127679968 + (TA)n Simple_repeat Simple_repeat 1 86 0 299 130 19 0 chr4 56609121 56609175 -127679487 + GA-rich Low_complexity Low_complexity 4 58 0 181 176 20 20 chr4 56609209 56609260 -127679402 + GA-rich Low_complexity Low_complexity 1 51 0 317 319 113 0 chr4 56609486 56609646 -127679016 - L1ME LINE L1 -436 5685 5508 186 43 0 0 chr4 56609676 56609699 -127678963 + (ATG)n Simple_repeat Simple_repeat 1 23 0 681 270 79 83 chr4 56611040 56611447 -127677215 - LTR68 LTR ERV1 -291 449 45 1959 140 0 31 chr4 56611473 56611589 -127677073 + AluSx SINE Alu 1 119 -191 2290 100 3 0 chr4 56611589 56611890 -127676772 + AluSq SINE Alu 1 302 -11 1959 140 0 31 chr4 56611890 56612092 -127676570 + AluSx SINE Alu 119 310 0 267 333 83 8 chr4 56612448 56612580 -127676082 - L2 LINE L2 -1 3312 3171 365 101 43 0 chr4 56612803 56612872 -127675790 - L1MA7 LINE L1 0 6291 6220 849 152 140 0 chr4 56612872 56613050 -127675612 + L1MA8 LINE L1 5755 5957 -334 359 277 9 18 chr4 56613230 56613342 -127675320 - MER117 DNA MER1_type -75 122 12 1568 202 42 46 chr4 56613771 56614188 -127674474 - MLT2C1 LTR ERVL 0 520 1 8027 57 1 3 chr4 56614842 56616653 -127672009 - L1PA5 LINE L1 0 6154 4344 30 45 0 0 chr4 56617036 56617080 -127671582 + AT_rich Low_complexity Low_complexity 1 44 0 1725 171 9 6 chr4 56617214 56617547 -127671115 - L1MA5 LINE L1 -1 6299 5966 3929 51 0 0 chr4 56617557 56618045 -127670617 - L1PA4 LINE L1 -8 6147 5660 361 352 43 20 chr4 56618202 56618455 -127670207 - L1M4 LINE L1 -442 6531 6273 387 0 0 0 chr4 56618588 56618631 -127670031 + (T)n Simple_repeat Simple_repeat 1 43 0 471 228 66 56 chr4 56618677 56618818 -127669844 - L1P LINE L1 -729 5425 5287 2313 92 0 10 chr4 56618818 56619132 -127669530 - AluY SINE Alu 0 311 1 471 228 66 56 chr4 56619132 56619275 -127669387 - L1P LINE L1 -867 5287 5138 1209 259 48 32 chr4 56619318 56619878 -127668784 - L1M4 LINE L1 -1455 5486 4918 17945 198 38 23 chr4 56619879 56624773 -127663889 + L1PA14 LINE L1 2 4974 -2610 6021 204 16 5 chr4 56624778 56626894 -127661768 + L1PA14 LINE L1 5463 7599 0 895 268 102 53 chr4 56626898 56627577 -127661085 - L1M4 LINE L1 -2019 4922 4211 1860 227 71 53 chr4 56627585 56628193 -127660469 - MLT1E2 LTR MaLR -7 619 1 447 257 62 35 chr4 56628198 56628486 -127660176 - L1M4 LINE L1 -2734 4207 3912 680 221 45 91 chr4 56628569 56628904 -127659758 - L1M4 LINE L1 -3515 3426 3077 1738 117 151 28 chr4 56628904 56629228 -127659434 + THE1B LTR MaLR 1 364 0 680 221 45 91 chr4 56629228 56629250 -127659412 - L1M4 LINE L1 -3864 3077 3056 1831 176 3 13 chr4 56629250 56629562 -127659100 - AluJb SINE Alu -1 311 3 680 221 45 91 chr4 56629562 56629623 -127659039 - L1M4 LINE L1 -3885 3056 3026 320 333 13 19 chr4 56629950 56630106 -127658556 + L2 LINE L2 3158 3312 -1 37 23 0 0 chr4 56631227 56631271 -127657391 + AT_rich Low_complexity Low_complexity 1 44 0 494 284 145 26 chr4 56631330 56631897 -127656765 - L1M4 LINE L1 -4753 2369 1736 513 284 52 52 chr4 56631909 56632314 -127656348 - L1M4 LINE L1 -4896 1527 1123 792 302 50 30 chr4 56632644 56633104 -127655558 - L1M4 LINE L1 -5925 498 30 305 261 113 74 chr4 56633253 56633510 -127655152 + HAL1 LINE L1 2238 2504 -3 2293 109 0 3 chr4 56633719 56634030 -127654632 + AluSp SINE Alu 1 310 -3 262 190 35 0 chr4 56635141 56635199 -127653463 - MIR3 SINE MIR 0 208 149 9229 43 0 1 chr4 56636183 56637362 -127651300 - L1P LINE L1 -730 5425 4248 * 32637 55 1 23 chr4 56637359 56641619 -127647043 + L1P LINE L1 1 4165 -1981 1865 186 19 27 chr4 56641612 56641988 -127646674 - L1MA5 LINE L1 -321 5979 5607 * 5596 209 33 60 chr4 56641987 56643582 -127645080 - L1M2 LINE L1 -4143 2706 1155 732 249 127 5 chr4 56643603 56643800 -127644862 + MLT1D LTR MaLR 150 370 -135 1181 176 35 9 chr4 56643812 56644039 -127644623 + MLT1A1 LTR MaLR 133 365 0 260 270 0 0 chr4 56644046 56644109 -127644553 + MIR SINE MIR 91 147 -61 497 227 0 0 chr4 56644157 56644254 -127644408 + MER6B DNA MER2_type 11 107 -169 1343 140 5 0 chr4 56644260 56644460 -127644202 - AluSp SINE Alu -5 308 108 395 183 35 7 chr4 56644460 56644565 -127644097 + MER6 DNA MER2_type 32 865 0 22 35 0 0 chr4 56644568 56644597 -127644065 + AT_rich Low_complexity Low_complexity 1 29 0 2168 118 0 7 chr4 56645421 56645725 -127642937 + AluSx SINE Alu 1 302 -10 1550 270 66 19 chr4 56647118 56647585 -127641077 - MLT1E2 LTR MaLR 0 626 138 2357 234 47 8 chr4 56648339 56649064 -127639598 + L1MC/D LINE L1 4405 5157 -989 7288 25 1 1 chr4 56649069 56650565 -127638097 + L1PA3 LINE L1 4516 6011 -144 315 0 0 0 chr4 56650685 56650720 -127637942 + (A)n Simple_repeat Simple_repeat 1 35 0 299 289 38 68 chr4 56650755 56650894 -127637768 + L1MB2 LINE L1 4067 4209 -1937 2043 117 35 0 chr4 56650894 56651184 -127637478 - AluSx SINE Alu -12 300 1 299 289 38 68 chr4 56651184 56651383 -127637279 + L1MB2 LINE L1 4209 4395 -1751 348 300 113 58 chr4 56651573 56651973 -127636689 + L1MB2 LINE L1 4630 5051 -1095 283 288 98 50 chr4 56652147 56652627 -127636035 + L1MC/D LINE L1 5316 5818 -303 2027 121 39 0 chr4 56653553 56653834 -127634828 - AluSp SINE Alu -19 294 3 1815 71 4 28 chr4 56654256 56654511 -127634151 + L1PA3 LINE L1 5904 6152 -3 2146 224 34 30 chr4 56654525 56655156 -127633506 + L1MB2 LINE L1 5153 5788 -383 3134 116 9 0 chr4 56655156 56655605 -127633057 - MLT2A2 LTR ERVL 0 453 1 2146 224 34 30 chr4 56655605 56655711 -127632951 + L1MB2 LINE L1 5788 5892 -279 * 22760 159 21 51 chr4 56655707 56661409 -127627253 + L1P3 LINE L1 11 5608 -853 33011 94 11 3 chr4 56661510 56666149 -127622513 - L1P LINE L1 -1470 4676 1 3306 91 0 62 chr4 56666149 56666700 -127621962 - L1P LINE L1 -3753 2393 1877 2545 197 30 4 chr4 56666718 56667216 -127621446 - L1P LINE L1 -5625 521 11 320 295 43 14 chr4 56668038 56668177 -127620485 - MER90 LTR ERV1 -18 596 454 227 348 11 0 chr4 56668221 56668313 -127620349 - MER90 LTR ERV1 -237 338 246 777 206 34 111 chr4 56668414 56668676 -127619986 - LTR65 LTR ERV1 -261 408 167 22 0 0 0 chr4 56668754 56668776 -127619886 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr4 56668800 56668843 -127619819 + AT_rich Low_complexity Low_complexity 1 43 0 297 68 0 0 chr4 56669095 56669139 -127619523 + (A)n Simple_repeat Simple_repeat 1 44 0 26 30 0 0 chr4 56669673 56669706 -127618956 + AT_rich Low_complexity Low_complexity 1 33 0 26 50 0 0 chr4 56669718 56669758 -127618904 + AT_rich Low_complexity Low_complexity 1 40 0 245 0 89 0 chr4 56670211 56670256 -127618406 + (TA)n Simple_repeat Simple_repeat 1 49 0 1590 169 10 20 chr4 56670258 56670554 -127618108 - AluSq SINE Alu -20 293 1 289 287 69 20 chr4 56670564 56670766 -127617896 - L1M4 LINE L1 -2228 3918 3707 274 191 44 0 chr4 56671721 56671789 -127616873 + MER4-int LTR ERV1 1111 1181 -5417 302 214 28 0 chr4 56671789 56671934 -127616728 + (TA)n Simple_repeat Simple_repeat 2 150 0 253 165 13 13 chr4 56671967 56672046 -127616616 + (TA)n Simple_repeat Simple_repeat 2 80 0 450 0 0 0 chr4 56673512 56673562 -127615100 + (TA)n Simple_repeat Simple_repeat 1 50 0 435 336 78 22 chr4 56675398 56675755 -127612907 + L1MD2 LINE L1 4851 5227 -919 429 278 89 16 chr4 56675869 56676060 -127612602 + L1MD2 LINE L1 5267 5471 -693 225 204 87 68 chr4 56676176 56676279 -127612383 - MLT1H LTR MaLR -53 496 392 535 113 0 0 chr4 56676390 56676470 -127612192 - MADE1 DNA Mariner 0 80 1 22 0 0 0 chr4 56676566 56676588 -127612074 + AT_rich Low_complexity Low_complexity 1 22 0 433 315 49 25 chr4 56676601 56676804 -127611858 + L1MD2 LINE L1 5485 5692 -478 34 65 0 0 chr4 56677290 56677352 -127611310 + AT_rich Low_complexity Low_complexity 1 62 0 22 80 0 0 chr4 56677908 56677958 -127610704 + AT_rich Low_complexity Low_complexity 1 50 0 25 31 0 0 chr4 56677985 56678017 -127610645 + AT_rich Low_complexity Low_complexity 1 32 0 371 269 34 17 chr4 56678097 56678216 -127610446 - L1P LINE L1 -1143 5003 4883 22 35 0 0 chr4 56678222 56678251 -127610411 + AT_rich Low_complexity Low_complexity 1 29 0 404 198 0 55 chr4 56678268 56678359 -127610303 - AluJb SINE Alu -4 298 213 493 193 143 21 chr4 56680283 56680423 -127608239 - MLT2B1 LTR ERVL -362 158 2 443 282 28 28 chr4 56680427 56680569 -127608093 + L1MDa LINE L1 132 273 -6267 213 39 0 0 chr4 56680624 56680650 -127608012 + (CA)n Simple_repeat Simple_repeat 1 26 0 1507 256 92 33 chr4 56681042 56681585 -127607077 - MLT1E2 LTR MaLR -24 602 28 240 281 16 16 chr4 56681783 56681847 -127606815 + L1MDa LINE L1 806 869 -5671 2514 194 24 8 chr4 56681971 56682472 -127606190 + LTR22 LTR ERVK 1 509 0 1488 237 69 36 chr4 56682909 56683491 -127605171 + L1MDa LINE L1 956 1556 -4987 1449 225 70 46 chr4 56683490 56684010 -127604652 + L1MD2 LINE L1 5811 6346 -13 * 183 80 0 0 chr4 56685955 56685980 -127602682 + (A)n Simple_repeat Simple_repeat 1 25 0 213 39 0 0 chr4 56686270 56686296 -127602366 + (TCTA)n Simple_repeat Simple_repeat 4 29 0 868 188 135 28 chr4 56686354 56686642 -127602020 + MER33 DNA MER1_type 6 324 0 254 330 107 0 chr4 56686949 56687052 -127601610 + L2 LINE L2 3197 3310 -3 429 278 19 93 chr4 56687052 56687257 -127601405 + L2 LINE L2 3123 3312 -1 25 0 0 0 chr4 56687528 56687553 -127601109 + AT_rich Low_complexity Low_complexity 1 25 0 1708 232 118 41 chr4 56687756 56688368 -127600294 + LTR1B LTR ERV1 1 659 -167 28441 95 7 11 chr4 56688368 56692974 -127595688 - HERV9 LTR ERV1 -3456 4943 268 442 92 0 0 chr4 56693074 56693139 -127595523 + L1PA8 LINE L1 6102 6166 -6 1301 170 17 21 chr4 56693139 56693421 -127595241 + L1MB2 LINE L1 5879 6165 -6 1337 225 68 3 chr4 56693426 56693751 -127594911 + MER7A DNA MER2_type 2 345 -1 2834 206 17 8 chr4 56693782 56694317 -127594345 + L1PA16 LINE L1 378 917 -5286 797 239 27 0 chr4 56694303 56694491 -127594171 + L1PA16 LINE L1 690 882 -5322 * 8343 245 19 22 chr4 56694768 56698271 -127590391 + L1PA16 LINE L1 781 4322 -1881 7614 43 2 1 chr4 56698276 56699235 -127589427 - L1P LINE L1 -2075 4071 3112 6998 38 16 1 chr4 56699335 56700220 -127588442 - L1P LINE L1 -2448 3698 2801 1809 31 0 0 chr4 56700214 56700439 -127588223 + L1PA3 LINE L1 4967 5191 -955 * 7601 25 3 0 chr4 56700446 56701363 -127587299 + L1PA3 LINE L1 5254 6173 0 3561 203 36 51 chr4 56701369 56702465 -127586197 + L1PA16 LINE L1 4312 5394 -829 2334 93 0 6 chr4 56702465 56702776 -127585886 - AluY SINE Alu -2 309 1 3561 203 36 51 chr4 56702776 56703015 -127585647 + L1PA16 LINE L1 5394 5635 -588 2080 173 56 35 chr4 56703015 56703534 -127585128 - MLT2A2 LTR ERVL 0 554 2 2969 189 16 2 chr4 56703534 56704104 -127584558 + L1PA16 LINE L1 5630 6207 -16 1805 186 9 31 chr4 56704802 56705455 -127583207 - L1M2 LINE L1 -713 5599 4955 478 341 28 44 chr4 56705455 56705707 -127582955 - L2 LINE L2 -967 2347 2100 22 35 0 0 chr4 56705812 56705841 -127582821 + AT_rich Low_complexity Low_complexity 1 29 0 213 335 92 6 chr4 56706406 56706570 -127582092 + MIR SINE MIR 43 220 -42 1393 323 125 23 chr4 56706987 56708080 -127580582 + L2 LINE L2 2095 3307 -6 202 165 63 0 chr4 56708162 56708241 -127580421 + (TA)n Simple_repeat Simple_repeat 2 85 0 1534 263 85 44 chr4 56708893 56709426 -127579236 - MLT1F1 LTR MaLR 0 567 10 4207 184 63 24 chr4 56709493 56709710 -127578952 - MER21B LTR ERV1 -1 862 655 3405 99 101 0 chr4 56709710 56710213 -127578449 + MER41A LTR ERV1 1 554 0 4207 184 63 24 chr4 56710213 56710825 -127577837 - MER21B LTR ERV1 -208 655 1 228 147 0 0 chr4 56710881 56710915 -127577747 + MLT1D LTR MaLR 403 436 -69 2113 310 43 22 chr4 56710915 56711927 -127576735 - MERVL-F LTR ERVL -3141 2344 1330 1713 159 30 0 chr4 56712115 56712386 -127576276 + AluSx SINE Alu 1 279 -33 1218 338 85 14 chr4 56712673 56713547 -127575115 - MERVL-F LTR ERVL -4436 1328 299 6853 191 165 37 chr4 56713554 56715084 -127573578 + MER52A LTR ERV1 1 1726 -29 2005 137 8 84 chr4 56715144 56715538 -127573124 - THE1B LTR MaLR 0 364 1 6143 153 5 11 chr4 56715543 56716498 -127572164 - THE1B-int LTR MaLR -6 1574 626 1595 99 77 15 chr4 56716497 56716603 -127572059 - THE1B-int LTR MaLR -1246 334 236 * 2569 99 6 3 chr4 56716603 56716957 -127571705 + THE1A LTR MaLR 1 355 0 1595 99 77 15 chr4 56716957 56717237 -127571425 - THE1B-int LTR MaLR -1344 236 1 2248 140 25 3 chr4 56717237 56717593 -127571069 - THE1B LTR MaLR 0 364 1 879 266 68 4 chr4 56717754 56718002 -127570660 - MLT2F LTR ERVL -43 620 357 403 190 107 58 chr4 56718000 56718121 -127570541 - MLT2F LTR ERVL -534 129 3 * 22 35 0 0 chr4 56719915 56719944 -127568718 + AT_rich Low_complexity Low_complexity 1 29 0 263 319 80 33 chr4 56720354 56720550 -127568112 - MIR SINE MIR -20 242 40 622 301 34 6 chr4 56720558 56720734 -127567928 + MER5A DNA MER1_type 9 189 0 29 78 0 0 chr4 56720904 56720968 -127567694 + AT_rich Low_complexity Low_complexity 1 64 0 357 24 0 0 chr4 56721820 56721862 -127566800 + (CA)n Simple_repeat Simple_repeat 1 42 0 538 286 92 24 chr4 56721972 56722178 -127566484 + MIR SINE MIR 17 236 -26 22 56 0 0 chr4 56722384 56722420 -127566242 + AT_rich Low_complexity Low_complexity 1 36 0 27 49 0 0 chr4 56723737 56723778 -127564884 + AT_rich Low_complexity Low_complexity 1 41 0 270 284 102 0 chr4 56723829 56723956 -127564706 + MIR SINE MIR 120 259 -3 31 0 0 0 chr4 56724002 56724033 -127564629 + AT_rich Low_complexity Low_complexity 1 31 0 23 54 0 0 chr4 56724238 56724275 -127564387 + AT_rich Low_complexity Low_complexity 1 37 0 296 235 66 133 chr4 56726592 56726894 -127561768 + LTR41 LTR ERVL 1 282 -491 288 218 32 139 chr4 56727067 56727283 -127561379 + LTR41 LTR ERVL 552 744 -29 260 254 18 18 chr4 56727500 56727614 -127561048 + (TAA)n Simple_repeat Simple_repeat 1 114 0 208 434 35 0 chr4 56728258 56728461 -127560201 + L2 LINE L2 419 628 -2686 1614 138 65 57 chr4 56728582 56728953 -127559709 - THE1C LTR MaLR -1 374 1 9177 140 57 5 chr4 56728953 56730450 -127558212 - THE1C-int LTR MaLR 0 1580 5 1620 141 88 41 chr4 56730454 56730794 -127557868 - THE1C LTR MaLR 0 375 20 265 370 112 42 chr4 56731016 56731643 -127557019 + L2 LINE L2 1003 1673 -1641 317 308 100 42 chr4 56731697 56731817 -127556845 - MER5B DNA MER1_type -45 133 7 250 309 219 4 chr4 56731850 56732106 -127556556 + L2 LINE L2 1710 2020 -1294 29 28 0 0 chr4 56732320 56732356 -127556306 + AT_rich Low_complexity Low_complexity 1 36 0 370 277 111 5 chr4 56732401 56732482 -127556180 - MLT1J LTR MaLR -118 291 220 212 0 36 0 chr4 56732482 56732510 -127556152 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 370 277 111 5 chr4 56732510 56732677 -127555985 - MLT1J LTR MaLR -189 220 9 201 279 0 70 chr4 56732713 56732799 -127555863 + MER5A DNA MER1_type 89 168 -21 13264 66 10 4 chr4 56732803 56734600 -127554062 - L1P LINE L1 -1396 4750 2943 763 164 0 0 chr4 56734752 56734892 -127553770 - HERVH LTR ERV1 -6435 1278 1139 892 66 25 0 chr4 56734892 56735013 -127553649 + AluY SINE Alu 167 290 -21 382 315 23 15 chr4 56735618 56735748 -127552914 - MLT1F1 LTR MaLR -54 513 383 221 150 0 0 chr4 56735846 56735886 -127552776 + (GA)n Simple_repeat Simple_repeat 2 41 0 381 369 119 25 chr4 56736329 56736773 -127551889 + L2 LINE L2 2828 3313 0 22 56 0 0 chr4 56736849 56736885 -127551777 + AT_rich Low_complexity Low_complexity 1 36 0 396 239 70 33 chr4 56737038 56737175 -127551487 + MIR SINE MIR 33 172 -66 257 295 22 79 chr4 56737356 56737495 -127551167 - L3b LINE CR1 -268 1315 1185 507 277 131 25 chr4 56738373 56738655 -127550007 - L1ME1 LINE L1 -159 6007 5696 249 180 30 24 chr4 56740121 56740232 -127548430 + MLT1E1 LTR MaLR 1 151 -503 31712 70 5 3 chr4 56740351 56744552 -127544110 + L1P LINE L1 221 4429 -1717 181 184 44 0 chr4 56744652 56744766 -127543896 + (TA)n Simple_repeat Simple_repeat 2 120 0 27 29 0 0 chr4 56744910 56744944 -127543718 + AT_rich Low_complexity Low_complexity 1 34 0 356 239 55 9 chr4 56745026 56745135 -127543527 - MER31B LTR ERV1 0 466 353 1451 179 16 46 chr4 56745135 56745442 -127543220 + MER101B LTR ERV1 1 298 -272 543 277 0 7 chr4 56745430 56745578 -127543084 + MER101 LTR ERV1 233 379 -95 * 1287 221 33 58 chr4 56745691 56745921 -127542741 - MER31B LTR ERV1 -110 356 122 1895 163 24 51 chr4 56745921 56746295 -127542367 - THE1B LTR MaLR 0 364 1 9812 133 13 30 chr4 56746295 56747902 -127540760 - THE1B-int LTR MaLR 0 1580 1 2141 138 31 8 chr4 56747902 56748258 -127540404 - THE1B LTR MaLR 0 364 1 1287 221 33 58 chr4 56748258 56748387 -127540275 - MER31B LTR ERV1 -341 125 4 321 82 0 0 chr4 56749309 56749358 -127539304 + (TA)n Simple_repeat Simple_repeat 2 50 0 30 69 0 0 chr4 56749361 56749419 -127539243 + AT_rich Low_complexity Low_complexity 1 58 0 36 40 0 0 chr4 56749634 56749684 -127538978 + AT_rich Low_complexity Low_complexity 1 50 0 284 348 94 11 chr4 56749959 56750140 -127538522 - MIR SINE MIR -18 244 49 21 0 0 0 chr4 56750453 56750474 -127538188 + AT_rich Low_complexity Low_complexity 1 21 0 270 233 67 0 chr4 56750736 56750796 -127537866 + L2 LINE L2 3190 3253 -60 2381 52 3 7 chr4 56750840 56751154 -127537508 + AluY SINE Alu 1 313 0 264 277 191 11 chr4 56751857 56751951 -127536711 - MIR SINE MIR -61 147 37 24 0 0 0 chr4 56752663 56752687 -127535975 + AT_rich Low_complexity Low_complexity 1 24 0 335 205 149 90 chr4 56753507 56753692 -127534970 - LTR37B LTR ERV1 -44 424 215 1793 105 3 123 chr4 56753692 56754043 -127534619 - AluSx SINE Alu -3 309 1 335 205 149 90 chr4 56754043 56754145 -127534517 - LTR37B LTR ERV1 -253 215 120 180 0 0 0 chr4 56754785 56754805 -127533857 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 24 32 0 0 chr4 56755215 56755246 -127533416 + AT_rich Low_complexity Low_complexity 1 31 0 199 313 60 44 chr4 56755681 56755863 -127532799 + L3b LINE CR1 1201 1385 -198 198 323 0 0 chr4 56756007 56756069 -127532593 - MER5B DNA MER1_type -113 65 4 375 286 24 8 chr4 56756338 56756464 -127532198 - MIR SINE MIR -21 241 114 2224 131 48 14 chr4 56756747 56757099 -127531563 - THE1B LTR MaLR 0 364 1 7491 138 24 0 chr4 56757100 56758226 -127530436 - THE1B-int LTR MaLR -1 1579 427 7156 117 29 2 chr4 56758236 56759289 -127529373 - THE1B-int LTR MaLR -492 1088 7 2095 146 36 25 chr4 56759289 56759646 -127529016 - THE1B LTR MaLR -3 361 1 773 314 190 39 chr4 56759807 56760518 -127528144 + L2 LINE L2 1942 2759 -555 343 347 41 7 chr4 56760767 56760914 -127527748 + L2 LINE L2 2899 3050 -263 616 204 75 166 chr4 56761360 56761771 -127526891 - MLT1A2 LTR MaLR 0 374 1 385 239 120 21 chr4 56762104 56762246 -127526416 - MLT1A1 LTR MaLR -209 156 1 759 328 68 3 chr4 56762442 56762735 -127525927 - LTR16A LTR ERVL -9 441 130 3528 175 57 15 chr4 56763809 56764479 -127524183 - MER50 LTR ERV1 -23 711 14 810 247 123 76 chr4 56765401 56765956 -127522706 + MER34C LTR ERV1 1 581 -4 26 50 0 0 chr4 56766089 56766129 -127522533 + AT_rich Low_complexity Low_complexity 1 40 0 4206 199 42 3 chr4 56766969 56767858 -127520804 - L1MC3 LINE L1 -20 7765 6843 * 5242 190 25 29 chr4 56767840 56768605 -127520057 - L1MC1 LINE L1 0 6333 5575 2233 111 0 3 chr4 56768605 56768902 -127519760 + AluSx SINE Alu 3 298 -14 5242 190 25 29 chr4 56768902 56769498 -127519164 - L1MC1 LINE L1 -758 5575 4978 2980 148 69 39 chr4 56769612 56769724 -127518938 - MER41C LTR ERV1 0 554 447 3643 55 0 4 chr4 56769724 56770180 -127518482 + L1PA7 LINE L1 5693 6146 -8 2980 148 69 39 chr4 56770180 56770601 -127518061 - MER41C LTR ERV1 -107 447 5 565 203 0 0 chr4 56770601 56770729 -127517933 + L1PA16 LINE L1 6039 6166 0 1334 218 30 40 chr4 56770737 56771109 -127517553 - L1 LINE L1 -1052 5094 4727 2518 260 25 28 chr4 56771476 56772396 -127516266 - L1MC1 LINE L1 -1198 4948 4032 2298 223 40 12 chr4 56772394 56772964 -127515698 - L1MC3 LINE L1 -917 6868 6283 * 2139 160 25 55 chr4 56773022 56773459 -127515203 - LOR1b LTR ERV1 -37 424 1 1030 216 168 17 chr4 56773459 56773816 -127514846 - L1MC3 LINE L1 -1510 6275 5865 1644 185 19 6 chr4 56773819 56774133 -127514529 - L1MC3 LINE L1 -2008 5777 5460 21 0 0 0 chr4 56774625 56774646 -127514016 + AT_rich Low_complexity Low_complexity 1 21 0 324 70 0 0 chr4 56776385 56776428 -127512234 + (TA)n Simple_repeat Simple_repeat 1 43 0 738 287 95 6 chr4 56776478 56776826 -127511836 - L1ME1 LINE L1 -92 6074 5696 252 341 23 0 chr4 56777792 56777921 -127510741 + L1ME LINE L1 567 698 -5936 223 88 44 44 chr4 56778524 56778615 -127510047 + (TA)n Simple_repeat Simple_repeat 2 92 0 259 146 44 15 chr4 56778788 56778925 -127509737 + (TA)n Simple_repeat Simple_repeat 1 141 0 496 333 69 25 chr4 56779079 56779485 -127509177 + L1ME LINE L1 1189 1612 -4930 455 216 70 36 chr4 56779491 56779686 -127508976 + MLT1F1 LTR MaLR 1 212 -342 470 277 23 15 chr4 56779802 56779932 -127508730 + MLT1F1 LTR MaLR 383 513 -54 1019 65 0 0 chr4 56780537 56780661 -127508001 - AluY SINE Alu -21 290 167 11099 121 15 45 chr4 56780661 56782577 -127506085 + HERVH LTR ERV1 1139 2995 -4718 2669 163 2 5 chr4 56782556 56783005 -127505657 + HERVH LTR ERV1 3140 3587 -4126 * 3119 128 5 107 chr4 56782999 56783625 -127505037 + HERVH LTR ERV1 3806 4367 -3346 * 3148 132 27 0 chr4 56783616 56784093 -127504569 + HERVH LTR ERV1 4660 5149 -2564 2487 129 9 9 chr4 56784084 56784511 -127504151 + HERVH LTR ERV1 5590 6016 -1697 * 3362 119 8 46 chr4 56784492 56785079 -127503583 + HERVH LTR ERV1 7149 7713 0 2041 97 33 6 chr4 56785079 56785468 -127503194 + LTR7 LTR ERV1 1 450 0 239 291 50 50 chr4 56785469 56785529 -127503133 - L1MEc LINE L1 -4783 1643 1584 665 254 48 22 chr4 56785529 56785757 -127502905 + MER106A DNA MER1_type 1 234 -2 239 291 50 50 chr4 56785757 56785837 -127502825 - L1MEc LINE L1 -4841 1585 1503 298 267 95 16 chr4 56785859 56786065 -127502597 - L1MEc LINE L1 -5002 1605 1181 37 52 0 0 chr4 56788649 56788707 -127499955 + AT_rich Low_complexity Low_complexity 1 58 0 199 244 11 11 chr4 56788857 56788947 -127499715 + GA-rich Low_complexity Low_complexity 1 90 0 21 36 0 0 chr4 56789722 56789750 -127498912 + AT_rich Low_complexity Low_complexity 1 28 0 1729 170 0 17 chr4 56791778 56792072 -127496590 + AluJb SINE Alu 9 297 -15 24 32 0 0 chr4 56792077 56792108 -127496554 + AT_rich Low_complexity Low_complexity 1 31 0 1650 205 182 108 chr4 56792492 56793064 -127495598 + MLT1E2 LTR MaLR 1 625 -1 690 215 7 0 chr4 56793217 56793366 -127495296 + MER96B DNA MER1_type? 263 412 -5 27 81 0 0 chr4 56793847 56793909 -127494753 + AT_rich Low_complexity Low_complexity 1 62 0 228 35 0 0 chr4 56794016 56794045 -127494617 + (TTG)n Simple_repeat Simple_repeat 2 30 0 897 129 83 129 chr4 56795411 56795628 -127493034 - MLT1A1 LTR MaLR 0 365 159 1625 166 52 83 chr4 56796578 56796964 -127491698 - MLT1A2 LTR MaLR 0 374 1 31 0 0 0 chr4 56797819 56797850 -127490812 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 56798105 56798126 -127490536 + AT_rich Low_complexity Low_complexity 1 21 0 970 18 0 0 chr4 56798126 56798240 -127490422 - L1PA4 LINE L1 -3 6152 6039 2050 148 0 0 chr4 56798382 56798685 -127489977 - AluSx SINE Alu -9 303 1 4090 188 13 30 chr4 56798752 56799592 -127489070 - LTR1B LTR ERV1 0 826 1 200 318 45 53 chr4 56799841 56799973 -127488689 + MIR SINE MIR 20 150 -112 352 247 182 32 chr4 56800157 56800311 -127488351 - MER5A DNA MER1_type 0 189 13 5297 61 1 9 chr4 56800741 56801426 -127487236 - L1PA6 LINE L1 -1 6153 5474 245 254 15 15 chr4 56801803 56801870 -127486792 + (CA)n Simple_repeat Simple_repeat 1 67 0 182 318 9 64 chr4 56802294 56802404 -127486258 - L2 LINE L2 -24 3289 3186 2040 112 13 19 chr4 56803436 56803749 -127484913 - AluSx SINE Alu -1 311 1 1423 204 10 52 chr4 56804479 56804787 -127483875 + AluJb SINE Alu 4 298 -4 411 327 42 33 chr4 56806077 56806291 -127482371 - L2 LINE L2 -474 2840 2625 201 330 136 0 chr4 56806820 56806938 -127481724 + MIR SINE MIR 117 250 -12 229 399 14 29 chr4 56808265 56808403 -127480259 - L2 LINE L2 0 3272 3137 3376 172 18 38 chr4 56808426 56809113 -127479549 + L1MB2 LINE L1 5450 6123 -48 1149 210 120 11 chr4 56809113 56809380 -127479282 + AluJo SINE Alu 3 298 -4 3376 172 18 38 chr4 56809380 56809424 -127479238 + L1MB2 LINE L1 6123 6166 -5 213 108 0 0 chr4 56809425 56809462 -127479200 + (TC)n Simple_repeat Simple_repeat 2 38 0 22 35 0 0 chr4 56810003 56810032 -127478630 + AT_rich Low_complexity Low_complexity 1 29 0 601 336 42 0 chr4 56810058 56810299 -127478363 - MIR SINE MIR -9 253 3 219 300 43 0 chr4 56810303 56810373 -127478289 - MIR SINE MIR -74 134 62 1195 223 4 27 chr4 56812741 56812997 -127475665 - AluJb SINE Alu -19 293 44 215 100 50 0 chr4 56813104 56813144 -127475518 + T-rich Low_complexity Low_complexity 2 43 0 283 336 106 48 chr4 56813312 56813773 -127474889 - LTR33 LTR ERVL 0 521 34 8644 28 0 0 chr4 56813779 56815573 -127473089 + L1PA2 LINE L1 4362 6155 0 568 303 56 25 chr4 56815790 56815988 -127472674 + MIR SINE MIR 3 206 -56 1684 185 55 39 chr4 56817117 56817501 -127471161 - MLT1B LTR MaLR 0 390 1 487 318 102 40 chr4 56817623 56817975 -127470687 + L2 LINE L2 2931 3304 -9 333 0 0 0 chr4 56818882 56818919 -127469743 + (TG)n Simple_repeat Simple_repeat 2 38 0 2340 109 0 3 chr4 56819912 56820223 -127468439 + AluSx SINE Alu 3 312 0 181 363 38 0 chr4 56820340 56820420 -127468242 + MIR3 SINE MIR 111 193 -15 457 333 61 13 chr4 56820730 56820958 -127467704 + MIR SINE MIR 12 250 -12 1074 273 125 33 chr4 56821560 56822047 -127466615 + MLT1F1 LTR MaLR 1 510 -32 6423 161 8 9 chr4 56822262 56822897 -127465765 - L1MA3 LINE L1 0 6305 5671 1913 144 7 7 chr4 56822897 56823195 -127465467 - AluSg SINE Alu -10 300 3 6423 161 8 9 chr4 56823195 56824328 -127464334 - L1MA3 LINE L1 -634 5671 4536 1979 181 83 44 chr4 56824320 56824676 -127463986 - L1MA3 LINE L1 -3322 2824 2438 * 1991 112 0 60 chr4 56824676 56824990 -127463672 - AluSx SINE Alu -17 295 1 1979 181 83 44 chr4 56824990 56825173 -127463489 - L1MA3 LINE L1 -3708 2438 2264 541 325 57 77 chr4 56825193 56825775 -127462887 - L2 LINE L2 -189 3124 2550 2553 48 0 0 chr4 56825826 56826137 -127462525 - AluY SINE Alu 0 311 1 274 358 0 37 chr4 56826214 56826348 -127462314 - L2 LINE L2 0 3313 3185 201 39 0 0 chr4 56826912 56826938 -127461724 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2543 167 106 6 chr4 56827846 56828355 -127460307 - LTR49 LTR ERV1 -35 560 1 276 313 13 20 chr4 56828355 56828505 -127460157 - MER104 DNA Tc2 -25 155 7 214 345 52 0 chr4 56828513 56828629 -127460033 - L2 LINE L2 -36 3277 3156 3160 195 29 50 chr4 56828726 56829450 -127459212 + MER50 LTR ERV1 1 709 -25 607 281 48 43 chr4 56829513 56829542 -127459120 - L2 LINE L2 -323 2990 2963 2910 218 47 37 chr4 56829542 56830360 -127458302 + LTR1B LTR ERV1 1 826 0 607 281 48 43 chr4 56830360 56830623 -127458039 - L2 LINE L2 -350 2963 2683 1650 153 95 17 chr4 56830723 56831069 -127457593 + LTR49 LTR ERV1 223 595 0 766 273 36 18 chr4 56831069 56831289 -127457373 - L2 LINE L2 -751 2563 2340 1538 183 55 3 chr4 56831312 56831599 -127457063 - MER72 LTR ERV1 0 722 421 2438 153 0 93 chr4 56831599 56832114 -127456548 + LTR26B LTR ERV1 1 467 -64 1726 156 3 24 chr4 56832114 56832467 -127456195 - MER4A LTR ERV1 0 664 261 538 103 31 21 chr4 56832467 56832564 -127456098 - MER4A LTR ERV1 -566 98 1 230 314 25 25 chr4 56832564 56832629 -127456033 + LTR26E LTR ERV1 554 618 -4 541 277 54 60 chr4 56832627 56832811 -127455851 - MER72 LTR ERV1 -298 424 242 714 311 5 0 chr4 56832881 56833077 -127455585 - MER72 LTR ERV1 -525 197 1 1050 286 30 3 chr4 56833079 56833376 -127455286 - L2 LINE L2 -998 2316 2012 21 36 0 0 chr4 56833655 56833683 -127454979 + AT_rich Low_complexity Low_complexity 1 28 0 1559 177 80 0 chr4 56836012 56836312 -127452350 - MER47A DNA MER2_type 0 366 43 1566 213 73 60 chr4 56837021 56837500 -127451162 + MLT2B1 LTR ERVL 1 485 -35 21 36 0 0 chr4 56837500 56837528 -127451134 + AT_rich Low_complexity Low_complexity 1 28 0 324 209 52 0 chr4 56837577 56837692 -127450970 + (TA)n Simple_repeat Simple_repeat 1 121 0 24 0 0 0 chr4 56839021 56839045 -127449617 + AT_rich Low_complexity Low_complexity 1 24 0 330 308 111 60 chr4 56839486 56839720 -127448942 - L2 LINE L2 -419 2895 2650 258 250 167 0 chr4 56839769 56839865 -127448797 - MIR SINE MIR -8 254 143 21 36 0 0 chr4 56840587 56840615 -127448047 + AT_rich Low_complexity Low_complexity 1 28 0 198 118 0 0 chr4 56841444 56841478 -127447184 + (TC)n Simple_repeat Simple_repeat 1 34 0 267 31 0 0 chr4 56841478 56841510 -127447152 + (CA)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr4 56841635 56841656 -127447006 + AT_rich Low_complexity Low_complexity 1 21 0 233 304 98 11 chr4 56842272 56842364 -127446298 + MIR3 SINE MIR 98 197 -11 637 290 88 29 chr4 56844952 56845438 -127443224 + HAL1 LINE L1 968 1482 -1025 2274 60 0 14 chr4 56846185 56846467 -127442195 + AluY SINE Alu 1 278 -33 246 219 62 21 chr4 56846523 56846619 -127442043 + HAL1 LINE L1 2272 2371 -136 344 311 172 34 chr4 56847668 56847877 -127440785 + MIR SINE MIR 8 245 -17 237 294 12 12 chr4 56848465 56848550 -127440112 + (CATA)n Simple_repeat Simple_repeat 4 88 0 277 143 0 48 chr4 56848560 56848623 -127440039 + L1MC4 LINE L1 6653 6712 -1330 1399 267 70 25 chr4 56848644 56849022 -127439640 - MLT1D LTR MaLR 0 505 99 2059 141 15 6 chr4 56849022 56849362 -127439300 - MER61A LTR ERV1 0 343 1 1399 267 70 25 chr4 56849362 56849466 -127439196 - MLT1D LTR MaLR -406 99 1 2264 114 45 0 chr4 56849913 56850272 -127438390 - L1PB1 LINE L1 -1 6150 5776 498 239 0 0 chr4 56850278 56850412 -127438250 + (TA)n Simple_repeat Simple_repeat 1 134 0 303 284 0 0 chr4 56850412 56850479 -127438183 + (CA)n Simple_repeat Simple_repeat 1 67 0 207 314 0 0 chr4 56850483 56850569 -127438093 + (CATA)n Simple_repeat Simple_repeat 4 89 0 244 191 0 0 chr4 56850570 56850617 -127438045 - L1MC4 LINE L1 -1344 6698 6652 270 241 76 0 chr4 56850658 56850737 -127437925 - L1MC4 LINE L1 -1344 6698 6614 260 322 0 0 chr4 56850667 56850757 -127437905 + L1MC4 LINE L1 6614 6703 -1339 * 243 256 79 12 chr4 56850824 56850988 -127437674 + (TTGGGG)n Simple_repeat Simple_repeat 1 175 0 370 280 11 11 chr4 56852694 56852869 -127435793 + (CATA)n Simple_repeat Simple_repeat 3 177 0 247 146 42 0 chr4 56852871 56852919 -127435743 - L1MC4 LINE L1 -1341 6701 6652 3323 131 16 55 chr4 56852923 56853664 -127434998 - L1P5 LINE L1 -361 5790 5119 * 8536 165 92 10 chr4 56853661 56856445 -127432217 - L1PBa LINE L1 -3693 3169 1 295 309 67 24 chr4 56856949 56857114 -127431548 - MLT1J2 LTR MaLR -239 211 40 212 179 0 0 chr4 56857214 56857253 -127431409 + (TA)n Simple_repeat Simple_repeat 1 39 0 24 53 0 0 chr4 56857321 56857359 -127431303 + AT_rich Low_complexity Low_complexity 1 38 0 708 195 6 6 chr4 56859767 56859926 -127428736 + L1PB2 LINE L1 5992 6150 -1 206 209 0 0 chr4 56860017 56860060 -127428602 + (CA)n Simple_repeat Simple_repeat 2 44 0 222 286 119 12 chr4 56860098 56860182 -127428480 - L2 LINE L2 -541 2773 2681 483 199 25 19 chr4 56860454 56860615 -127428047 + CT-rich Low_complexity Low_complexity 3 164 0 4039 101 34 22 chr4 56860615 56861634 -127427028 + MER11A LTR ERVK 1 1266 0 1711 172 3 28 chr4 56861678 56861720 -127426942 - AluJb SINE Alu 0 312 270 198 0 0 0 chr4 56861720 56861742 -127426920 + (GA)n Simple_repeat Simple_repeat 1 22 0 1711 172 3 28 chr4 56861742 56862019 -127426643 - AluJb SINE Alu -42 270 1 331 344 62 19 chr4 56862373 56862533 -127426129 - MIR SINE MIR -63 199 33 33 66 0 0 chr4 56863205 56863266 -127425396 + AT_rich Low_complexity Low_complexity 1 61 0 32 43 0 0 chr4 56863304 56863350 -127425312 + AT_rich Low_complexity Low_complexity 1 46 0 24 53 0 0 chr4 56863667 56863705 -127424957 + AT_rich Low_complexity Low_complexity 1 38 0 274 318 63 40 chr4 56863768 56863894 -127424768 + L3 LINE CR1 1338 1466 -111 22 0 0 0 chr4 56863980 56864002 -127424660 + AT_rich Low_complexity Low_complexity 1 22 0 5693 227 115 55 chr4 56864621 56864746 -127423916 + L1ME1 LINE L1 2145 2261 -4142 1821 196 3 17 chr4 56864746 56865099 -127423563 + MER7A DNA MER2_type 1 346 0 5693 227 115 55 chr4 56865099 56865116 -127423546 + L1ME1 LINE L1 2261 2276 -4127 2189 103 10 0 chr4 56865116 56865417 -127423245 + AluSq SINE Alu 1 304 -9 5693 227 115 55 chr4 56865417 56866852 -127421810 + L1ME1 LINE L1 2276 3624 -2779 1957 143 0 0 chr4 56866852 56867158 -127421504 + AluSq SINE Alu 1 306 0 5693 227 115 55 chr4 56867158 56867662 -127421000 + L1ME1 LINE L1 3624 4096 -2307 1706 144 4 18 chr4 56867662 56867940 -127420722 + AluSx SINE Alu 1 274 -38 201 39 0 0 chr4 56867950 56867976 -127420686 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 5693 227 115 55 chr4 56867976 56868166 -127420496 + L1ME1 LINE L1 4104 4281 -2122 1874 131 107 88 chr4 56868166 56868393 -127420269 - MSTA LTR MaLR 0 428 188 2128 127 3 0 chr4 56868393 56868701 -127419961 + AluSc SINE Alu 1 309 0 1874 131 107 88 chr4 56868701 56868893 -127419769 - MSTA LTR MaLR -240 188 1 5693 227 115 55 chr4 56868893 56870416 -127418246 + L1ME1 LINE L1 4281 6318 -85 1685 130 23 88 chr4 56870416 56870815 -127417847 - THE1C LTR MaLR -2 373 1 5693 227 115 55 chr4 56870815 56870900 -127417762 + L1ME1 LINE L1 6318 6396 -7 1784 190 165 14 chr4 56871972 56872153 -127416509 + MER67D LTR ERV1 6 158 -356 1080 86 6 18 chr4 56872153 56872316 -127416346 + L1PA13 LINE L1 5999 6159 -4 1784 190 165 14 chr4 56872316 56872576 -127416086 + MER67D LTR ERV1 158 514 0 21 36 0 0 chr4 56872664 56872692 -127415970 + AT_rich Low_complexity Low_complexity 1 28 0 2293 87 0 13 chr4 56874472 56874784 -127413878 + AluY SINE Alu 2 309 -2 441 297 183 3 chr4 56874901 56875191 -127413471 + L2 LINE L2 1925 2266 -1048 295 362 34 7 chr4 56875205 56875354 -127413308 + MIR SINE MIR 12 164 -98 876 370 63 32 chr4 56875389 56876237 -127412425 + L2 LINE L2 2301 3180 -133 2483 66 0 0 chr4 56876563 56876867 -127411795 - AluY SINE Alu -7 304 1 867 290 175 23 chr4 56876867 56877378 -127411284 - L2 LINE L2 -1005 2309 1680 243 0 0 0 chr4 56877378 56877405 -127411257 + (TC)n Simple_repeat Simple_repeat 2 28 0 867 290 175 23 chr4 56877405 56877534 -127411128 - L2 LINE L2 -1634 1680 1572 737 328 139 14 chr4 56877534 56877894 -127410768 - L2 LINE L2 -2022 1292 888 266 368 35 0 chr4 56877912 56878026 -127410636 + L2 LINE L2 3180 3297 -16 234 316 0 38 chr4 56878036 56878115 -127410547 - L2 LINE L2 -16 3297 3222 2586 164 33 64 chr4 56878489 56879070 -127409592 + MER34B LTR ERV1 3 565 0 24 0 0 0 chr4 56879336 56879360 -127409302 + AT_rich Low_complexity Low_complexity 1 24 0 416 307 65 0 chr4 56880372 56880525 -127408137 + MIR SINE MIR 2 164 -98 855 262 72 72 chr4 56880672 56881218 -127407444 - MLT1G LTR MaLR 0 590 46 377 320 16 0 chr4 56881352 56881474 -127407188 - LTR16A1 LTR ERVL -331 126 3 368 242 0 44 chr4 56881476 56881567 -127407095 + MIR SINE MIR 159 245 -17 183 324 95 0 chr4 56883010 56883084 -127405578 - MIR SINE MIR -10 252 172 1322 279 63 8 chr4 56883278 56883672 -127404990 + LTR16C LTR ERVL 74 489 -2 3568 164 79 6 chr4 56884815 56885449 -127403213 + MER39 LTR ERV1 1 680 -27 426 279 40 53 chr4 56885453 56885679 -127402983 + L1MC4a LINE L1 5844 6066 -1742 225 0 0 0 chr4 56887046 56887071 -127401591 + (CA)n Simple_repeat Simple_repeat 2 26 0 262 308 8 39 chr4 56887886 56888016 -127400646 - MIR SINE MIR -51 211 86 279 372 29 53 chr4 56888394 56888487 -127400175 - L2 LINE L2 -2812 502 408 2513 106 19 6 chr4 56888487 56888846 -127399816 - THE1B LTR MaLR 0 364 1 279 372 29 53 chr4 56888846 56888959 -127399703 - L2 LINE L2 -2906 408 301 264 333 12 0 chr4 56888985 56889066 -127399596 + (TATG)n Simple_repeat Simple_repeat 2 83 0 * 271 676 0 0 chr4 56889012 56889188 -127399474 + (TA)n Simple_repeat Simple_repeat 2 177 0 240 219 0 0 chr4 56889188 56889252 -127399410 - L1MC4 LINE L1 -1339 6703 6640 238 232 24 0 chr4 56889252 56889334 -127399328 + (TA)n Simple_repeat Simple_repeat 2 85 0 270 106 0 0 chr4 56889334 56889381 -127399281 + (GA)n Simple_repeat Simple_repeat 2 48 0 1244 115 75 0 chr4 56889454 56889654 -127399008 + L1PA15 LINE L1 5949 6163 -2 26 0 0 0 chr4 56890161 56890187 -127398475 + AT_rich Low_complexity Low_complexity 1 26 0 1217 228 37 30 chr4 56890367 56890665 -127397997 + AluJo SINE Alu 9 308 -4 31018 109 11 60 chr4 56891043 56897497 -127391165 - L1PA7 LINE L1 -11 6143 12 629 221 14 21 chr4 56897499 56897644 -127391018 - L1M4 LINE L1 -563 5615 5472 8091 238 35 20 chr4 56897670 56897761 -127390901 - L1M4 LINE L1 -869 5277 5189 2468 80 0 0 chr4 56897761 56898061 -127390601 - AluY SINE Alu -11 300 1 8091 238 35 20 chr4 56898061 56900524 -127388138 - L1M4 LINE L1 -957 5189 2686 930 252 86 49 chr4 56900565 56900974 -127387688 + L1M4 LINE L1 2272 2695 -3451 760 282 98 50 chr4 56901616 56902035 -127386627 + LTR16A1 LTR ERVL 1 439 -18 677 283 28 3 chr4 56902324 56902523 -127386139 + MIR SINE MIR 5 205 -3 25 31 0 0 chr4 56902699 56902731 -127385931 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr4 56902837 56902861 -127385801 + AT_rich Low_complexity Low_complexity 1 24 0 1033 338 167 35 chr4 56903346 56904960 -127383702 - L2 LINE L2 -11 3302 1466 1296 277 52 69 chr4 56905524 56906297 -127382365 - L1ME3A LINE L1 0 6170 5411 781 197 14 14 chr4 56906297 56906444 -127382218 + MER20 DNA MER1_type 73 219 0 191 356 69 10 chr4 56906539 56906640 -127382022 - MIR3 SINE MIR -9 199 93 25 31 0 0 chr4 56907894 56907926 -127380736 + AT_rich Low_complexity Low_complexity 1 32 0 196 371 36 21 chr4 56908639 56908779 -127379883 + L2 LINE L2 3171 3312 -1 309 89 0 0 chr4 56911510 56911555 -127377107 + (CA)n Simple_repeat Simple_repeat 2 46 0 22 0 0 0 chr4 56911581 56911603 -127377059 + AT_rich Low_complexity Low_complexity 1 22 0 301 364 53 15 chr4 56912189 56912395 -127376267 + MIR SINE MIR 21 234 -28 1978 148 7 0 chr4 56912489 56912787 -127375875 - AluSq SINE Alu -13 300 1 1617 231 46 44 chr4 56912870 56913351 -127375311 - MLT1D LTR MaLR 0 505 24 2229 95 3 3 chr4 56915444 56915739 -127372923 + AluSq SINE Alu 1 295 -18 1074 270 50 96 chr4 56916080 56916748 -127371914 + MER77 LTR ERV1 53 661 -4 289 262 0 10 chr4 56918414 56918517 -127370145 + (TA)n Simple_repeat Simple_repeat 2 103 0 2817 144 69 4 chr4 56920007 56920485 -127368177 + LTR44 LTR ERV1 1 509 -10 450 305 52 0 chr4 56920833 56920987 -127367675 - MIR SINE MIR -42 220 59 27 29 0 0 chr4 56921114 56921148 -127367514 + AT_rich Low_complexity Low_complexity 1 34 0 5205 134 25 0 chr4 56921288 56921413 -127367249 - L1PA15 LINE L1 0 6165 6045 4446 77 19 133 chr4 56921413 56922189 -127366473 + LTR12 LTR ERV1 1 688 0 5205 134 25 0 chr4 56922189 56923482 -127365180 - L1PA15 LINE L1 -120 6045 4739 25 0 0 0 chr4 56925262 56925287 -127363375 + AT_rich Low_complexity Low_complexity 1 25 0 270 0 0 0 chr4 56925466 56925496 -127363166 + (A)n Simple_repeat Simple_repeat 1 30 0 2073 116 0 58 chr4 56926746 56927075 -127361587 + AluJb SINE Alu 1 310 -2 232 258 140 54 chr4 56928088 56928181 -127360481 + MER5A DNA MER1_type 89 189 0 541 202 23 54 chr4 56928295 56928424 -127360238 - FLAM_A SINE Alu -17 125 1 195 381 119 0 chr4 56928582 56928700 -127359962 - L2 LINE L2 -7 3265 3134 440 193 8 0 chr4 56929275 56929394 -127359268 + (TA)n Simple_repeat Simple_repeat 1 120 0 352 323 115 49 chr4 56930085 56930432 -127358230 + L2 LINE L2 2944 3313 0 198 143 0 0 chr4 56930744 56930779 -127357883 + (AATTG)n Simple_repeat Simple_repeat 3 37 0 425 273 56 56 chr4 56931414 56931645 -127357017 + MLT1K LTR MaLR 334 564 -24 293 311 38 30 chr4 56932072 56932204 -127356458 - L3 LINE CR1 -122 1455 1323 268 354 21 0 chr4 56932235 56932331 -127356331 + L2 LINE L2 3174 3271 -1 212 319 217 7 chr4 56932392 56932530 -127356132 - L3 LINE CR1 -313 1264 1098 1795 191 57 39 chr4 56933352 56933537 -127355125 + MSTD LTR MaLR 1 181 -215 2049 162 15 3 chr4 56933537 56933876 -127354786 + MER61A LTR ERV1 1 343 0 1795 191 57 39 chr4 56933876 56934078 -127354584 + MSTD LTR MaLR 181 395 -1 369 292 62 8 chr4 56934733 56934913 -127353749 - MIR SINE MIR -17 245 7 2318 168 35 10 chr4 56935170 56935651 -127353011 - L1MB3 LINE L1 -2 6181 5689 37 0 0 0 chr4 56935700 56935737 -127352925 + AT_rich Low_complexity Low_complexity 1 37 0 352 210 12 37 chr4 56935811 56935892 -127352770 + MER34 LTR ERV1 1 79 -463 1181 151 165 10 chr4 56936092 56936290 -127352372 + L1MA9 LINE L1 5945 6111 -189 333 0 0 0 chr4 56936290 56936327 -127352335 + (CA)n Simple_repeat Simple_repeat 1 37 0 1181 151 165 10 chr4 56936327 56936426 -127352236 + L1MA9 LINE L1 6111 6280 -20 319 285 161 53 chr4 56937274 56937635 -127351027 + L2 LINE L2 2912 3311 -2 2645 120 23 12 chr4 56938324 56938723 -127349939 + MER57B LTR ERV1 1 403 -31 232 315 185 20 chr4 56939686 56939832 -127348830 - MIR SINE MIR -10 252 83 186 43 0 0 chr4 56939845 56939868 -127348794 + (GA)n Simple_repeat Simple_repeat 2 24 0 1484 149 30 15 chr4 56940315 56940583 -127348079 - L1PA10 LINE L1 -4 6164 5893 281 339 46 9 chr4 56941188 56941297 -127347365 + L2 LINE L2 3157 3269 -3 390 351 8 15 chr4 56941410 56941544 -127347118 - L2 LINE L2 0 3313 3181 400 294 108 1 chr4 56942503 56942749 -127345913 + MLT1G3 LTR MaLR 177 487 -43 348 24 0 0 chr4 56943229 56943270 -127345392 + (TA)n Simple_repeat Simple_repeat 1 41 0 7036 36 0 3 chr4 56943271 56944404 -127344258 - L1PA5 LINE L1 -11 6143 5015 225 369 0 0 chr4 56944728 56944812 -127343850 - MLT1-int LTR MaLR -869 502 419 333 322 63 83 chr4 56945135 56945498 -127343164 - MLT1H LTR MaLR -180 369 14 239 95 48 0 chr4 56946693 56946735 -127341927 + CT-rich Low_complexity Low_complexity 3 46 0 22 0 0 0 chr4 56946867 56946889 -127341773 + AT_rich Low_complexity Low_complexity 1 22 0 198 233 93 108 chr4 56947086 56947215 -127341447 + MIR SINE MIR 77 203 -59 194 0 39 0 chr4 56947705 56947731 -127340931 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 198 268 0 0 chr4 56948137 56948178 -127340484 - L2 LINE L2 -18 3254 3214 1064 269 44 44 chr4 56948380 56948907 -127339755 + L1MC2 LINE L1 4603 5129 -1017 4627 189 31 10 chr4 56948921 56949890 -127338772 + L1MC2 LINE L1 5297 6285 -59 23 33 0 0 chr4 56949903 56949933 -127338729 + AT_rich Low_complexity Low_complexity 1 30 0 489 161 35 0 chr4 56949963 56950050 -127338612 + L1MB8 LINE L1 5433 5522 -656 1066 277 67 12 chr4 56950063 56950392 -127338270 - MLT1A1 LTR MaLR 0 365 19 2740 198 22 17 chr4 56950410 56951048 -127337614 + L1MB8 LINE L1 5538 6178 0 234 305 0 0 chr4 56951053 56951135 -127337527 + L1M4 LINE L1 4662 4743 -1403 357 82 0 0 chr4 56951600 56951649 -127337013 + (CA)n Simple_repeat Simple_repeat 1 49 0 1126 227 108 36 chr4 56952185 56952226 -127336436 - MLT2B1 LTR ERVL 0 414 377 225 65 0 0 chr4 56952226 56952257 -127336405 + (TG)n Simple_repeat Simple_repeat 2 32 0 1126 227 108 36 chr4 56952257 56952600 -127336062 - MLT2B1 LTR ERVL -37 377 1 1795 149 11 0 chr4 56953104 56953373 -127335289 - AluSx SINE Alu -12 300 29 2542 123 26 17 chr4 56953386 56953808 -127334854 - MSTA LTR MaLR 0 428 3 2949 152 6 6 chr4 56955812 56956494 -127332168 - MER72 LTR ERV1 0 722 8 6112 171 48 73 chr4 56956502 56957984 -127330678 - MER72-int LTR ERV1 -1 6757 5313 716 231 0 0 chr4 56958062 56958192 -127330470 - MER4B-int LTR ERV1 -2092 2099 1970 1567 161 165 9 chr4 56958193 56958515 -127330147 - MSTA LTR MaLR -1 427 56 1775 156 18 42 chr4 56958522 56958644 -127330018 - MER4B-int LTR ERV1 -1876 4882 4759 1512 219 3 7 chr4 56958644 56958945 -127329717 - AluJo SINE Alu -10 302 3 1775 156 18 42 chr4 56958945 56959155 -127329507 - MER4B-int LTR ERV1 -1999 4759 4558 1086 149 44 48 chr4 56959149 56959441 -127329221 - MER4B-int LTR ERV1 -2767 3564 2685 * 239 280 0 0 chr4 56959444 56959532 -127329130 + G-rich Low_complexity Low_complexity 1 88 0 1567 116 0 0 chr4 56959647 56959863 -127328799 - L1P LINE L1 -5920 226 11 297 156 0 0 chr4 56959868 56959913 -127328749 + Charlie1 DNA MER1_type 2703 2747 -14 1997 209 5 7 chr4 56960183 56960604 -127328058 - L1PA16 LINE L1 -1054 5092 4673 4940 135 22 31 chr4 56960604 56960841 -127327821 + L1PA16 LINE L1 5122 5360 -806 2066 120 14 10 chr4 56960841 56961132 -127327530 + AluSc SINE Alu 1 292 -17 4940 135 22 31 chr4 56961132 56961566 -127327096 + L1PA16 LINE L1 5360 5784 -382 1985 100 0 4 chr4 56961566 56961825 -127326837 + AluSg SINE Alu 40 297 -13 4940 135 22 31 chr4 56961825 56962194 -127326468 + L1PA16 LINE L1 5784 6155 -11 21 0 0 31 chr4 56962194 56962210 -127326452 + AT_rich Low_complexity Low_complexity 1 16 -15 1867 114 0 63 chr4 56962210 56962527 -127326135 + AluY SINE Alu 15 311 0 21 0 0 31 chr4 56962527 56962542 -127326120 + AT_rich Low_complexity Low_complexity 16 31 0 198 143 0 0 chr4 56964022 56964057 -127324605 + (TG)n Simple_repeat Simple_repeat 2 36 0 2204 89 18 0 chr4 56964207 56964488 -127324174 + AluSg SINE Alu 13 298 -12 243 286 63 32 chr4 56965412 56965538 -127323124 + L2 LINE L2 2549 2678 -636 180 77 0 0 chr4 56965550 56965576 -127323086 + (TC)n Simple_repeat Simple_repeat 1 26 0 201 108 0 0 chr4 56965593 56965630 -127323032 + (CA)n Simple_repeat Simple_repeat 1 37 0 207 220 0 20 chr4 56965641 56965691 -127322971 + L2 LINE L2 2667 2715 -599 233 135 0 0 chr4 56965691 56965728 -127322934 + MER96 DNA MER1_type? 47 83 -92 1159 311 109 30 chr4 56966573 56966909 -127321753 + MLT1G LTR MaLR 1 398 -192 768 259 6 0 chr4 56966909 56967083 -127321579 + MER96 DNA MER1_type 1 175 0 1159 311 109 30 chr4 56967083 56967287 -127321375 + MLT1G LTR MaLR 398 584 -6 266 196 0 0 chr4 56968137 56968188 -127320474 + L2 LINE L2 3256 3306 -7 1025 196 9 47 chr4 56968210 56968424 -127320238 - MER58A DNA MER1_type 0 224 19 386 350 38 13 chr4 56968433 56968590 -127320072 + MIR SINE MIR 31 191 -71 500 181 12 0 chr4 56968667 56968750 -127319912 + MER58A DNA MER1_type 19 102 -5 342 184 0 0 chr4 56968750 56968826 -127319836 + (TA)n Simple_repeat Simple_repeat 2 77 0 1882 157 3 13 chr4 56969405 56969718 -127318944 - AluJo SINE Alu -2 310 1 28 0 0 0 chr4 56969764 56969792 -127318870 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr4 56969864 56969895 -127318767 + AT_rich Low_complexity Low_complexity 1 31 0 258 32 0 0 chr4 56970317 56970348 -127318314 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 33 0 0 0 chr4 56971062 56971095 -127317567 + AT_rich Low_complexity Low_complexity 1 33 0 355 235 20 29 chr4 56972417 56972519 -127316143 + MIR SINE MIR 66 166 -96 285 232 60 66 chr4 56972877 56973028 -127315634 - L1ME3 LINE L1 -216 5946 5797 250 333 117 75 chr4 56973793 56974178 -127314484 + L2 LINE L2 2872 3272 0 544 214 169 7 chr4 56974230 56974384 -127314278 + MER5A DNA MER1_type 4 182 -7 1208 193 71 27 chr4 56974547 56974588 -127314074 + MER58B DNA MER1_type 26 64 -2356 2546 208 134 14 chr4 56974588 56975325 -127313337 + LTR1B LTR ERV1 1 826 0 1208 193 71 27 chr4 56975325 56975579 -127313083 + MER58B DNA MER1_type 64 334 -7 903 226 0 0 chr4 56975683 56975847 -127312815 - FRAM SINE Alu -2 164 1 1264 112 16 102 chr4 56977544 56977794 -127310868 - L1MA4 LINE L1 0 6300 6081 2223 121 0 0 chr4 56977794 56978100 -127310562 - AluJo SINE Alu -6 306 1 1264 112 16 102 chr4 56978100 56978162 -127310500 - L1MA4 LINE L1 -219 6081 6015 9125 24 1 0 chr4 56978166 56980019 -127308643 - L1PA2 LINE L1 0 6155 4302 4971 31 33 0 chr4 56980019 56980632 -127308030 + L1PA2 LINE L1 3658 4290 -1856 203 282 65 81 chr4 56981318 56981442 -127307220 - MIR SINE MIR -139 123 2 1114 207 0 5 chr4 56981459 56981672 -127306990 - AluJb SINE Alu -15 297 86 23 40 0 0 chr4 56982673 56982698 -127305964 + AT_rich Low_complexity Low_complexity 1 25 0 1119 184 5 10 chr4 56983304 56983511 -127305151 - MER2 DNA MER2_type -139 206 1 182 343 0 0 chr4 56984024 56984094 -127304568 - L2 LINE L2 -19 3294 3225 1679 208 17 37 chr4 56984106 56984510 -127304152 - MSTD LTR MaLR 0 396 1 2081 144 3 0 chr4 56985583 56985895 -127302767 - AluSq SINE Alu 0 313 1 252 149 0 0 chr4 56986529 56986576 -127302086 + (TTTTC)n Simple_repeat Simple_repeat 4 50 0 244 306 0 14 chr4 56986754 56986826 -127301836 + L2 LINE L2 2335 2405 -909 2389 120 28 8 chr4 56988719 56989076 -127299586 - THE1B LTR MaLR 0 364 1 454 333 118 36 chr4 56989466 56989916 -127298746 + L2 LINE L2 1801 2287 -1027 246 291 0 25 chr4 56990016 56990095 -127298567 + MLT1K LTR MaLR 189 265 -323 191 288 188 41 chr4 56990592 56991044 -127297618 + L2 LINE L2 2291 2884 -388 371 304 107 9 chr4 56991130 56991242 -127297420 + L2 LINE L2 3150 3272 0 570 210 72 36 chr4 56993596 56993763 -127294899 - L1MC4 LINE L1 -1482 6560 6388 231 154 0 0 chr4 56993778 56993817 -127294845 - L1ME2 LINE L1 -106 6058 6020 1715 179 45 34 chr4 56993962 56994343 -127294319 + L1MD3 LINE L1 7610 7994 -1 300 274 94 17 chr4 56994586 56994703 -127293959 + MIR SINE MIR 88 213 -49 215 330 85 0 chr4 56994713 56994807 -127293855 + L2 LINE L2 3169 3270 -2 221 326 11 11 chr4 56995380 56995472 -127293190 + MIR SINE MIR 170 261 -1 180 77 0 0 chr4 56997170 56997196 -127291466 + (GGAGAA)n Simple_repeat Simple_repeat 1 26 0 1606 123 31 0 chr4 56997596 56997857 -127290805 - L1PA14 LINE L1 -2 6159 5891 7547 30 0 0 chr4 56997865 56999230 -127289432 - L1PA4 LINE L1 -3 6152 4787 1267 239 132 24 chr4 56999238 56999656 -127289006 + MLT1D LTR MaLR 36 498 -7 341 258 86 69 chr4 57001467 57001700 -127286962 + MIR SINE MIR 22 258 -4 195 137 274 0 chr4 57003601 57003652 -127285010 + L2 LINE L2 3249 3313 0 431 98 24 0 chr4 57004118 57004200 -127284462 + (TCTA)n Simple_repeat Simple_repeat 4 87 0 216 97 0 0 chr4 57004407 57004438 -127284224 + (TTCTCC)n Simple_repeat Simple_repeat 1 31 0 182 333 65 32 chr4 57004505 57004598 -127284064 - L2 LINE L2 -26 3246 3151 1971 133 21 7 chr4 57005744 57006030 -127282632 + AluSx SINE Alu 1 290 -22 286 125 14 14 chr4 57006038 57006110 -127282552 + (TA)n Simple_repeat Simple_repeat 1 72 0 207 373 100 0 chr4 57006363 57006473 -127282189 - L2 LINE L2 -401 2913 2793 223 312 116 14 chr4 57006521 57006659 -127282003 + MIR SINE MIR 13 164 -98 210 128 0 0 chr4 57007180 57007219 -127281443 + (T)n Simple_repeat Simple_repeat 1 39 0 1230 306 94 31 chr4 57008937 57009490 -127279172 - MLT1K LTR MaLR 0 588 1 23 0 0 0 chr4 57009574 57009597 -127279065 + AT_rich Low_complexity Low_complexity 1 23 0 210 329 51 25 chr4 57010096 57010175 -127278487 - MER5A DNA MER1_type -88 101 21 212 311 142 20 chr4 57010499 57010647 -127278015 + MIR SINE MIR 28 193 -69 2021 119 297 0 chr4 57010847 57011217 -127277445 + LTR12 LTR ERV1 1 480 -234 750 156 0 7 chr4 57011570 57011705 -127276957 - L1MB2 LINE L1 -7 6164 6031 2494 175 20 11 chr4 57011711 57012162 -127276500 + LOR1b LTR ERV1 7 461 0 1483 174 15 0 chr4 57012162 57012426 -127276236 - L1MB2 LINE L1 -137 6034 5767 512 253 75 23 chr4 57013511 57013685 -127274977 + MIR SINE MIR 16 198 -64 208 318 16 0 chr4 57014980 57015043 -127273619 + MIR SINE MIR 52 115 -147 285 194 132 78 chr4 57015102 57015231 -127273431 + MLT1H LTR MaLR 66 201 -348 575 246 87 11 chr4 57015271 57015454 -127273208 + MLT1H LTR MaLR 314 510 -39 281 318 45 0 chr4 57015481 57015591 -127273071 + MIR SINE MIR 131 245 -17 208 217 261 11 chr4 57016078 57016170 -127272492 - L2 LINE L2 0 3313 3199 231 207 35 0 chr4 57016488 57016546 -127272116 + (TTTA)n Simple_repeat Simple_repeat 1 60 0 257 290 0 43 chr4 57016571 57016640 -127272022 - L2 LINE L2 -85 3187 3122 1858 174 20 50 chr4 57017113 57017515 -127271147 - MLT1B LTR MaLR 0 390 1 2184 115 3 0 chr4 57017913 57018209 -127270453 - AluSg SINE Alu -13 297 1 23 0 0 0 chr4 57018937 57018960 -127269702 + AT_rich Low_complexity Low_complexity 1 23 0 220 337 0 12 chr4 57019241 57019327 -127269335 - L2 LINE L2 -2 3270 3186 1411 229 22 38 chr4 57019375 57019746 -127268916 + MLT1A1 LTR MaLR 1 365 0 2296 109 0 0 chr4 57019885 57020196 -127268466 + AluY SINE Alu 1 311 0 478 359 101 17 chr4 57020443 57021172 -127267490 + L2 LINE L2 2518 3313 0 270 0 0 0 chr4 57021656 57021686 -127266976 + (TG)n Simple_repeat Simple_repeat 2 31 0 1172 248 81 33 chr4 57021998 57022068 -127266594 - MLT1G1 LTR MaLR -39 516 451 2476 154 41 2 chr4 57022068 57022484 -127266178 - MSTB1 LTR MaLR 0 432 1 1172 248 81 33 chr4 57022484 57022932 -127265730 - MLT1G1 LTR MaLR -104 451 1 297 307 33 40 chr4 57023330 57023480 -127265182 + MIR3 SINE MIR 43 191 -17 608 289 78 9 chr4 57023903 57024121 -127264541 - MIR SINE MIR -26 236 4 181 246 108 31 chr4 57025558 57025623 -127263039 - L2 LINE L2 -44 3228 3159 2087 137 13 26 chr4 57026339 57026719 -127261943 + THE1C LTR MaLR 1 375 0 10479 116 12 29 chr4 57026719 57028326 -127260336 + THE1C-int LTR MaLR 1 1580 0 1910 131 16 48 chr4 57028342 57028715 -127259947 + THE1C LTR MaLR 15 375 0 27 29 0 0 chr4 57029163 57029197 -127259465 + AT_rich Low_complexity Low_complexity 1 34 0 185 289 0 0 chr4 57030763 57030815 -127257847 - MIR3 SINE MIR -4 204 153 404 238 42 62 chr4 57030907 57031047 -127257615 + MER112 DNA MER1_type 72 208 -52 631 253 5 54 chr4 57031047 57031233 -127257429 - MER45A DNA AcHobo -1 177 1 404 238 42 62 chr4 57031233 57031285 -127257377 + MER112 DNA MER1_type 208 260 0 266 284 158 24 chr4 57031288 57031415 -127257247 - MIR3 SINE MIR -57 151 8 2233 126 0 3 chr4 57031509 57031810 -127256852 - AluSx SINE Alu -12 300 1 1766 190 3 3 chr4 57032333 57032628 -127256034 + AluJb SINE Alu 1 295 -17 180 0 0 0 chr4 57033044 57033064 -127255598 + (T)n Simple_repeat Simple_repeat 1 20 0 404 216 22 37 chr4 57034212 57034346 -127254316 + MER103 DNA DNA 26 157 -9 496 308 30 46 chr4 57034970 57035207 -127253455 - MIR SINE MIR -18 244 12 11474 210 27 11 chr4 57035640 57039409 -127249253 - L1PA16 LINE L1 -49 6820 3111 180 0 0 0 chr4 57039409 57039429 -127249233 + (TTA)n Simple_repeat Simple_repeat 2 21 0 11474 210 27 11 chr4 57039429 57039702 -127248960 - L1PA16 LINE L1 -3758 3111 2844 333 0 0 0 chr4 57039702 57039739 -127248923 + (TG)n Simple_repeat Simple_repeat 2 38 0 11474 210 27 11 chr4 57039739 57041509 -127247153 - L1PA16 LINE L1 -4025 2844 928 953 189 282 4 chr4 57041509 57041736 -127246926 - L1PA16 LINE L1 -6190 659 370 215 377 136 16 chr4 57042057 57042314 -127246348 + L2 LINE L2 2552 2839 -475 219 292 62 42 chr4 57042664 57042760 -127245902 + L2 LINE L2 3214 3311 -2 220 415 9 0 chr4 57042937 57043043 -127245619 + L2 LINE L2 3203 3309 -4 224 228 120 43 chr4 57043098 57043190 -127245472 - L2 LINE L2 -9 3304 3206 9885 162 43 3 chr4 57043930 57048701 -127239961 + L1PBa LINE L1 1 5138 -1724 26819 91 13 43 chr4 57048706 57051781 -127236881 + L1P LINE L1 14 3180 -2966 2696 36 0 0 chr4 57051781 57052088 -127236574 + AluY SINE Alu 1 307 -4 26819 91 13 43 chr4 57052088 57052372 -127236290 + L1P LINE L1 3180 3471 -2675 3705 102 179 7 chr4 57052372 57052959 -127235703 - LTR12 LTR ERV1 0 688 1 26819 91 13 43 chr4 57052959 57053940 -127234722 + L1P LINE L1 3471 4224 -1922 377 247 25 0 chr4 57053956 57054037 -127234625 - MER5A DNA MER1_type -106 83 1 839 285 50 26 chr4 57054298 57054600 -127234062 - L2 LINE L2 0 3313 3005 2234 92 3 3 chr4 57054946 57055238 -127233424 + AluY SINE Alu 1 292 -19 302 308 82 79 chr4 57055257 57055536 -127233126 - L3 LINE CR1 -207 1370 1091 2107 127 3 0 chr4 57055625 57055924 -127232738 - AluSq SINE Alu -13 300 1 836 276 41 12 chr4 57056051 57056294 -127232368 - MIR SINE MIR -11 251 2 257 383 13 13 chr4 57056314 57056468 -127232194 - L3 LINE CR1 -742 835 682 387 0 0 0 chr4 57056490 57056533 -127232129 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 21 0 0 0 chr4 57056671 57056692 -127231970 + AT_rich Low_complexity Low_complexity 1 21 0 228 306 71 12 chr4 57057322 57057354 -127231308 + L2 LINE L2 3182 3211 -61 880 225 38 19 chr4 57057354 57057567 -127231095 - MER20 DNA MER1_type 0 219 3 228 306 71 12 chr4 57057567 57057619 -127231043 + L2 LINE L2 3211 3271 -1 211 304 193 22 chr4 57062812 57062947 -127225715 - MIR SINE MIR -2 260 103 238 367 75 8 chr4 57063039 57063159 -127225503 + L2 LINE L2 3184 3311 -2 184 276 10 51 chr4 57063238 57063336 -127225326 + MIR SINE MIR 125 218 -44 388 262 37 9 chr4 57063634 57063741 -127224921 - L2 LINE L2 -1 3271 3162 6189 122 168 81 chr4 57063812 57065374 -127223288 - pTR5 LTR ERV1 0 2438 741 520 152 0 0 chr4 57065394 57065486 -127223176 - pTR5 LTR ERV1 -1606 832 741 312 243 133 92 chr4 57065770 57065943 -127222719 + LTR16C LTR ERVL 173 352 -139 254 231 58 66 chr4 57066513 57066634 -127222028 + LTR16C LTR ERVL 372 491 0 2161 136 13 0 chr4 57066664 57066972 -127221690 + AluSx SINE Alu 1 312 0 816 315 16 4 chr4 57067745 57068002 -127220660 - MIR SINE MIR 0 262 3 518 299 11 5 chr4 57069234 57069418 -127219244 - LTR67 LTR ERVL -14 543 359 429 250 21 114 chr4 57069495 57069731 -127218931 - LTR67 LTR ERVL -331 226 13 2215 128 3 0 chr4 57069971 57070275 -127218387 - AluSg SINE Alu -5 305 1 379 325 83 18 chr4 57070694 57070922 -127217740 + MIR SINE MIR 20 262 0 204 40 0 0 chr4 57071138 57071163 -127217499 + (CA)n Simple_repeat Simple_repeat 2 26 0 282 87 0 0 chr4 57071474 57071520 -127217142 + (GA)n Simple_repeat Simple_repeat 1 46 0 306 328 68 28 chr4 57071580 57071757 -127216905 + MIR SINE MIR 70 253 -9 24 53 0 0 chr4 57073526 57073564 -127215098 + AT_rich Low_complexity Low_complexity 1 38 0 1611 198 8 55 chr4 57073750 57074133 -127214529 - MLT1A1 LTR MaLR 0 365 1 298 295 62 0 chr4 57074164 57074276 -127214386 + L2 LINE L2 2159 2277 -1037 231 274 48 0 chr4 57074770 57074832 -127213830 + Charlie7 DNA MER1_type 2548 2612 0 219 348 174 9 chr4 57074990 57075220 -127213442 + L2 LINE L2 2817 3084 -188 1266 206 105 63 chr4 57076395 57076794 -127211868 - L1MD2 LINE L1 -226 6133 5718 219 182 23 0 chr4 57076955 57076999 -127211663 + T-rich Low_complexity Low_complexity 2 46 0 25 31 0 0 chr4 57077261 57077293 -127211369 + AT_rich Low_complexity Low_complexity 1 32 0 198 0 0 0 chr4 57077557 57077579 -127211083 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 24707 158 12 16 chr4 57077585 57078680 -127209982 - L1PA10 LINE L1 -5 7601 6503 2229 105 0 0 chr4 57078680 57078974 -127209688 + AluY SINE Alu 1 294 -17 24707 158 12 16 chr4 57078974 57083470 -127205192 - L1PA10 LINE L1 -1103 6503 1268 204 333 0 0 chr4 57083486 57083540 -127205122 + L2 LINE L2 3219 3272 0 304 319 28 30 chr4 57083732 57083920 -127204742 + MIR3 SINE MIR 3 192 -62 40 21 0 0 chr4 57084619 57084666 -127203996 + AT_rich Low_complexity Low_complexity 1 47 0 236 341 188 0 chr4 57086128 57086336 -127202326 + MIR SINE MIR 9 255 -7 320 336 0 9 chr4 57086564 57086674 -127201988 - HAL1b LINE L1 -999 349 241 293 73 0 0 chr4 57086679 57086720 -127201942 - MLT2B2 LTR ERVL 0 515 475 303 28 0 0 chr4 57086722 57086758 -127201904 + (TC)n Simple_repeat Simple_repeat 1 36 0 213 39 0 0 chr4 57086757 57086783 -127201879 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 1692 131 4 36 chr4 57086783 57087058 -127201604 - MLT2D LTR ERVL -142 272 7 1875 144 13 10 chr4 57087462 57087760 -127200902 - AluSp SINE Alu -14 299 1 28 61 0 0 chr4 57087784 57087833 -127200829 + AT_rich Low_complexity Low_complexity 1 49 0 2092 78 44 0 chr4 57088381 57088651 -127200011 + AluY SINE Alu 1 282 -29 269 61 0 41 chr4 57088659 57088708 -127199954 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 593 264 178 29 chr4 57088919 57089430 -127199232 + HAL1b LINE L1 664 1250 -98 22 70 0 0 chr4 57089454 57089497 -127199165 + AT_rich Low_complexity Low_complexity 1 43 0 220 271 0 0 chr4 57089497 57089545 -127199117 - MIR SINE MIR -64 144 97 7362 31 7 14 chr4 57089560 57091002 -127197660 + L1PA4 LINE L1 4720 6154 -1 28 48 0 0 chr4 57091064 57091106 -127197556 + AT_rich Low_complexity Low_complexity 1 42 0 6743 67 8 8 chr4 57091221 57092895 -127195767 + L1PA7 LINE L1 4456 6154 0 324 115 26 13 chr4 57092954 57093032 -127195630 + GA-rich Low_complexity Low_complexity 1 79 0 343 221 225 42 chr4 57093863 57094076 -127194586 - L1ME4a LINE L1 -6 6115 5864 25 0 0 0 chr4 57094333 57094358 -127194304 + AT_rich Low_complexity Low_complexity 1 25 0 2077 155 0 0 chr4 57094636 57094940 -127193722 + AluSx SINE Alu 1 304 -8 620 287 92 37 chr4 57094983 57095226 -127193436 - MIR SINE MIR -2 260 5 292 305 0 0 chr4 57095951 57096033 -127192629 + CT-rich Low_complexity Low_complexity 1 82 0 2020 148 137 8 chr4 57096226 57096605 -127192057 - MSTA LTR MaLR 0 428 1 316 306 19 19 chr4 57096814 57096922 -127191740 - MIR SINE MIR -143 119 12 1635 154 114 0 chr4 57097368 57097648 -127191014 + AluSx SINE Alu 1 312 0 1204 273 114 18 chr4 57098343 57098790 -127189872 + L2 LINE L2 2354 2843 -471 412 234 43 0 chr4 57098862 57098956 -127189706 + MIR SINE MIR 152 249 -13 245 412 18 0 chr4 57099019 57099133 -127189529 - MIR SINE MIR -60 148 33 10010 43 8 0 chr4 57102000 57104017 -127184645 - L1PA3 LINE L1 -1 6154 4127 20425 44 0 0 chr4 57104017 57106575 -127182087 + L1P LINE L1 1228 3784 -2362 2144 42 0 0 chr4 57106596 57106861 -127181801 - L1PA4 LINE L1 -3 6152 5888 485 294 59 7 chr4 57107963 57108116 -127180546 + MLT1J1 LTR MaLR 21 181 -265 294 351 32 7 chr4 57108191 57108345 -127180317 + MLT1J1 LTR MaLR 289 446 0 643 264 19 91 chr4 57108383 57108591 -127180071 + MIR SINE MIR 70 262 0 340 36 0 143 chr4 57109242 57109298 -127179364 - MLT2D LTR ERVL 0 515 367 1849 180 64 5 chr4 57109421 57109794 -127178868 - MLT2D LTR ERVL -19 395 1 436 268 103 69 chr4 57109833 57110094 -127178568 + Charlie8 DNA MER1_type 12 281 -2136 333 0 0 0 chr4 57111544 57111581 -127177081 + (TG)n Simple_repeat Simple_repeat 1 37 0 360 225 109 36 chr4 57111867 57112005 -127176657 - L1ME1 LINE L1 -17 6149 6002 2886 177 114 25 chr4 57112522 57112662 -127176000 + MER39 LTR ERV1 1 127 -580 2141 114 7 0 chr4 57112662 57112959 -127175703 + AluSq SINE Alu 1 299 -14 2886 177 114 25 chr4 57112959 57113467 -127175195 + MER39 LTR ERV1 127 707 0 1032 259 115 42 chr4 57115096 57115567 -127173095 - L2 LINE L2 -1 3312 2808 11126 213 14 14 chr4 57115667 57118119 -127170543 - L1 LINE L1 -1310 4836 2384 1277 49 25 0 chr4 57118119 57118282 -127170380 - L1PA5 LINE L1 -4 6150 5984 11126 213 14 14 chr4 57118282 57118491 -127170171 - L1 LINE L1 -3762 2384 2176 5726 114 8 31 chr4 57118496 57118875 -127169787 - L1PB1 LINE L1 -2 6149 5763 621 38 0 0 chr4 57118875 57118955 -127169707 + (TA)n Simple_repeat Simple_repeat 1 80 0 5726 114 8 31 chr4 57118955 57119532 -127169130 - L1PB1 LINE L1 -388 5763 5216 208 354 146 35 chr4 57119835 57119979 -127168683 + L2 LINE L2 3112 3271 -1 1302 256 21 65 chr4 57120601 57121081 -127167581 + LTR40b LTR ERVL 4 462 0 544 282 71 21 chr4 57121094 57121437 -127167225 + MLT1J2 LTR MaLR 45 427 -23 323 199 118 110 chr4 57122077 57122213 -127166449 - L2 LINE L2 0 3313 3177 1533 221 0 0 chr4 57122216 57122501 -127166161 + AluJb SINE Alu 7 291 -21 1604 282 291 8 chr4 57122509 57123419 -127165243 - L2 LINE L2 -608 2706 1539 246 269 129 21 chr4 57123466 57123559 -127165103 - L2 LINE L2 -185 3087 2985 364 359 113 32 chr4 57123754 57123802 -127164860 - L2 LINE L2 -527 2787 2744 1763 179 10 3 chr4 57123802 57124098 -127164564 - AluJb SINE Alu -14 298 1 364 359 113 32 chr4 57124098 57124651 -127164011 - L2 LINE L2 -570 2744 2137 23 0 0 0 chr4 57125153 57125176 -127163486 + AT_rich Low_complexity Low_complexity 1 23 0 5471 18 0 0 chr4 57125353 57126022 -127162640 - L1PA3 LINE L1 0 6155 5527 5687 36 3 0 chr4 57126022 57126737 -127161925 + L1P LINE L1 2951 3667 -2479 2321 55 3 22 chr4 57127207 57127518 -127161144 - AluY SINE Alu -6 305 1 181 323 57 65 chr4 57128162 57128286 -127160376 + MIR3 SINE MIR 9 131 -77 27 0 0 0 chr4 57128528 57128555 -127160107 + AT_rich Low_complexity Low_complexity 1 27 0 235 296 0 37 chr4 57129814 57129895 -127158767 - L1ME LINE L1 -603 5559 5482 601 214 41 18 chr4 57129935 57130129 -127158533 - L1ME LINE L1 -688 5476 5274 745 280 41 10 chr4 57130167 57130574 -127158088 - L1M4 LINE L1 -925 5221 4791 743 325 124 30 chr4 57132506 57132974 -127155688 - LTR33 LTR ERVL -4 517 6 1770 302 89 65 chr4 57133597 57134139 -127154523 - ERVL LTR ERVL -699 5065 4537 366 23 0 0 chr4 57134139 57134182 -127154480 + (TG)n Simple_repeat Simple_repeat 2 44 0 1770 302 89 65 chr4 57134182 57134879 -127153783 - ERVL LTR ERVL -1227 4537 3797 576 287 145 52 chr4 57135394 57135871 -127152791 - LTR33 LTR ERVL 0 521 1 260 310 95 26 chr4 57136035 57136085 -127152577 + L2 LINE L2 3146 3191 -81 2473 144 34 42 chr4 57136085 57136556 -127152106 - MLT1C LTR MaLR 0 467 1 260 310 95 26 chr4 57136556 57136621 -127152041 + L2 LINE L2 3191 3269 -3 287 310 41 41 chr4 57137576 57137721 -127150941 - MIR SINE MIR -107 155 11 233 373 45 0 chr4 57137771 57137881 -127150781 + L2 LINE L2 2944 3058 -255 221 256 179 0 chr4 57137967 57138045 -127150617 + L2 LINE L2 3171 3262 -10 2359 188 29 11 chr4 57138761 57139207 -127149455 - MER65C LTR ERV1 -7 454 1 308 311 30 53 chr4 57139210 57139342 -127149320 - MER5A DNA MER1_type -52 137 9 25 0 0 0 chr4 57142334 57142359 -127146303 + AT_rich Low_complexity Low_complexity 1 25 0 494 305 17 17 chr4 57143444 57143621 -127145041 + L1ME1 LINE L1 5386 5562 -604 1217 196 39 35 chr4 57143658 57143918 -127144744 + AluJo SINE Alu 41 301 -11 965 224 94 13 chr4 57143949 57144248 -127144414 + L1ME1 LINE L1 5607 5929 -237 562 257 67 14 chr4 57144247 57144457 -127144205 - L1MEc LINE L1 -1756 4459 4239 * 1529 250 60 62 chr4 57144446 57145398 -127143264 - L1MEc LINE L1 -2613 3602 2653 200 211 18 0 chr4 57145449 57145506 -127143156 + (TG)n Simple_repeat Simple_repeat 2 59 0 3620 291 110 16 chr4 57145508 57145841 -127142821 - L1MEc LINE L1 -3934 2462 2162 207 0 0 0 chr4 57145841 57145864 -127142798 + (TA)n Simple_repeat Simple_repeat 2 24 0 3620 291 110 16 chr4 57145864 57146408 -127142254 - L1MEc LINE L1 -4234 2162 1671 282 29 0 0 chr4 57146408 57146443 -127142219 + (CA)n Simple_repeat Simple_repeat 2 36 0 3620 291 110 16 chr4 57146443 57147746 -127140916 - L1MEc LINE L1 -4725 1671 74 586 305 106 9 chr4 57147820 57148306 -127140356 - MLT1G LTR MaLR 0 555 8 264 204 37 0 chr4 57148331 57148385 -127140277 + LTR33A LTR ERVL 468 523 0 25 0 0 0 chr4 57149527 57149552 -127139110 + AT_rich Low_complexity Low_complexity 1 25 0 520 271 60 13 chr4 57149619 57149770 -127138892 + MLT1J2 LTR MaLR 20 177 -273 1819 215 35 33 chr4 57149785 57150241 -127138421 + MSTB2 LTR MaLR 1 457 0 731 301 109 65 chr4 57150260 57151123 -127137539 + ERVL LTR ERVL 850 1750 -4014 1217 236 59 20 chr4 57151283 57151748 -127136914 + MLT1E2 LTR MaLR 156 626 0 1735 332 71 49 chr4 57151819 57152670 -127135992 + ERVL LTR ERVL 3529 4415 -1349 5055 30 2 36 chr4 57152670 57153309 -127135353 - L1PA3 LINE L1 0 6155 5539 1735 332 71 49 chr4 57153309 57153639 -127135023 + ERVL LTR ERVL 4415 4736 -1028 260 247 0 52 chr4 57153932 57154009 -127134653 + MER53 DNA DNA 105 177 -12 * 360 278 0 0 chr4 57153941 57154031 -127134631 - MER53 DNA DNA -99 90 1 271 316 84 37 chr4 57154143 57154333 -127134329 + L2 LINE L2 2613 2811 -503 591 302 19 42 chr4 57154651 57154863 -127133799 - MIR SINE MIR -55 207 1 379 67 5 108 chr4 57155077 57155272 -127133390 + (TA)n Simple_repeat Simple_repeat 1 175 0 525 105 0 96 chr4 57155300 57155850 -127132812 + (TA)n Simple_repeat Simple_repeat 1 497 0 362 102 30 137 chr4 57155860 57156057 -127132605 + (TATATG)n Simple_repeat Simple_repeat 3 178 0 290 129 67 31 chr4 57156076 57156412 -127132250 + (TATATG)n Simple_repeat Simple_repeat 1 348 0 229 167 6 72 chr4 57156473 57156653 -127132009 + (TA)n Simple_repeat Simple_repeat 1 168 0 367 283 87 47 chr4 57156739 57157112 -127131550 - L1ME LINE L1 -597 5573 5174 21 0 0 0 chr4 57157139 57157160 -127131502 + AT_rich Low_complexity Low_complexity 1 21 0 381 290 10 0 chr4 57157172 57157272 -127131390 + L2 LINE L2 2658 2758 -556 240 238 36 0 chr4 57157312 57157396 -127131266 + L1M4 LINE L1 3899 3985 -2161 23 0 0 0 chr4 57157580 57157603 -127131059 + AT_rich Low_complexity Low_complexity 1 23 0 609 256 0 0 chr4 57157759 57157927 -127130735 + (TA)n Simple_repeat Simple_repeat 2 169 0 207 100 0 0 chr4 57158017 57158047 -127130615 + (CA)n Simple_repeat Simple_repeat 2 31 0 316 368 67 9 chr4 57158611 57158834 -127129828 - MIR SINE MIR -13 249 14 253 120 60 0 chr4 57159167 57159217 -127129445 - Charlie7 DNA MER1_type -2509 103 51 183 360 107 50 chr4 57159337 57159656 -127129006 + L2 LINE L2 2936 3272 0 197 184 0 0 chr4 57159803 57159841 -127128821 - MIR3 SINE MIR 0 208 171 266 356 79 23 chr4 57161633 57161810 -127126852 - MIR SINE MIR -27 235 49 1707 136 45 36 chr4 57162266 57162574 -127126088 + THE1B LTR MaLR 4 314 -50 1702 172 0 46 chr4 57163357 57163761 -127124901 - AluJo SINE Alu 0 389 1 2143 170 30 0 chr4 57166955 57167319 -127121343 - MLT1B LTR MaLR 0 390 16 1473 256 17 60 chr4 57167617 57168081 -127120581 + MLT2B1 LTR ERVL 3 446 -74 441 0 0 0 chr4 57168140 57168189 -127120473 + (TA)n Simple_repeat Simple_repeat 2 50 0 26 0 0 0 chr4 57168348 57168374 -127120288 + AT_rich Low_complexity Low_complexity 1 26 0 771 21 27 69 chr4 57168374 57168562 -127120100 + (TA)n Simple_repeat Simple_repeat 1 180 0 375 185 6 57 chr4 57168582 57168739 -127119923 + (CATATA)n Simple_repeat Simple_repeat 1 149 0 247 233 35 47 chr4 57168776 57168862 -127119800 + L1MC4 LINE L1 6614 6698 -1344 227 200 0 15 chr4 57168864 57168929 -127119733 + (TA)n Simple_repeat Simple_repeat 1 64 0 208 216 0 0 chr4 57168997 57169034 -127119628 + (TG)n Simple_repeat Simple_repeat 2 38 0 226 205 0 0 chr4 57169039 57169078 -127119584 + Tigger3(Golem) DNA MER2_type 40 78 -2951 497 259 17 0 chr4 57169082 57169198 -127119464 + FLAM_A SINE Alu 6 123 -19 392 234 0 0 chr4 57169205 57169282 -127119380 + Tigger3(Golem) DNA MER2_type 66 142 -2887 * 1506 123 60 0 chr4 57169279 57169514 -127119148 + Tigger3(Golem) DNA MER2_type 2772 3020 -9 306 136 0 0 chr4 57169512 57169556 -127119106 + MLT2D LTR ERVL 371 414 0 * 240 385 0 0 chr4 57170376 57170454 -127118208 - L2 LINE L2 -9 3263 3186 2962 127 19 58 chr4 57172143 57172727 -127115935 + L1MA7 LINE L1 5731 6291 0 312 354 77 0 chr4 57172729 57172859 -127115803 + L1ME LINE L1 498 637 -5433 1992 156 42 17 chr4 57172859 57173217 -127115445 + MLT1B LTR MaLR 24 390 0 2288 243 65 31 chr4 57173220 57173963 -127114699 + L1ME1 LINE L1 4570 5286 -880 2340 84 3 0 chr4 57173963 57174259 -127114403 - AluSp SINE Alu -16 297 1 2288 243 65 31 chr4 57174259 57174947 -127113715 + L1ME1 LINE L1 5286 6059 -107 219 186 0 0 chr4 57174974 57175017 -127113645 + (TA)n Simple_repeat Simple_repeat 1 43 0 731 183 36 0 chr4 57175043 57175180 -127113482 + MER82 DNA MER2_type 2 143 -510 1104 185 0 92 chr4 57175657 57175938 -127112724 + MER82 DNA MER2_type 212 466 -187 270 0 0 0 chr4 57176126 57176156 -127112506 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 700 306 30 4 chr4 57177246 57177478 -127111184 + MIR SINE MIR 20 257 -5 193 392 72 7 chr4 57178418 57178571 -127110091 - L2 LINE L2 -3 3269 3107 590 287 42 18 chr4 57178819 57178986 -127109676 + MLT2E LTR ERVL 19 189 -439 2123 201 74 56 chr4 57178993 57179564 -127109098 + MER92B LTR ERV1 1 585 -51 1082 148 190 164 chr4 57179564 57180065 -127108597 - MER67D LTR ERV1 0 514 1 2123 201 74 56 chr4 57180065 57180116 -127108546 + MER92B LTR ERV1 585 634 -2 367 313 81 18 chr4 57180116 57180468 -127108194 + MLT2F LTR ERVL 262 657 -6 395 320 72 18 chr4 57181355 57181577 -127107085 + ERVL LTR ERVL 5198 5431 -333 253 333 36 67 chr4 57182399 57182466 -127106196 - L2 LINE L2 -220 3052 2984 1672 197 47 45 chr4 57182466 57182932 -127105730 - MLT1C LTR MaLR 0 467 1 253 333 36 67 chr4 57182932 57183089 -127105573 - L2 LINE L2 -288 2984 2835 225 282 39 0 chr4 57183151 57183229 -127105433 - L1M4 LINE L1 -2302 3844 3764 463 274 39 0 chr4 57183239 57183392 -127105270 - L1M4 LINE L1 -2432 3714 3556 3598 94 10 2 chr4 57183397 57183899 -127104763 + L1PA10 LINE L1 5546 6051 -117 292 65 0 0 chr4 57183899 57183945 -127104717 + L1PA11 LINE L1 6129 6174 0 1007 277 37 33 chr4 57183951 57184409 -127104253 - L1M4 LINE L1 -3453 2693 2234 1366 221 27 3 chr4 57184414 57184745 -127103917 - L1MA9 LINE L1 -38 6274 5936 * 6755 34 5 5 chr4 57184739 57185556 -127103106 - L1PA5 LINE L1 0 6154 5338 5952 60 1 1 chr4 57185556 57187250 -127101412 + L1P LINE L1 1393 3177 -2969 2879 200 30 20 chr4 57187252 57188317 -127100345 - L1MA9 LINE L1 -371 5941 4870 21 0 0 0 chr4 57188889 57188910 -127099752 + AT_rich Low_complexity Low_complexity 1 21 0 1280 321 61 31 chr4 57189656 57190230 -127098432 - MLT1E LTR MaLR -2 591 1 4036 115 63 3 chr4 57190378 57191045 -127097617 + L1MA2 LINE L1 5598 6304 0 217 50 25 25 chr4 57192639 57192679 -127095983 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1858 140 46 38 chr4 57192687 57193058 -127095604 - THE1C LTR MaLR 0 375 2 245 365 133 33 chr4 57193071 57193372 -127095290 - L2 LINE L2 -2439 875 545 32710 38 1 4 chr4 57193926 57198799 -127089863 - L1PA3 LINE L1 -4 6151 1292 9553 72 3 9 chr4 57198799 57200065 -127088597 + L1PA3 LINE L1 8 1266 -4880 1367 245 24 19 chr4 57201857 57202229 -127086433 + MLT1A2 LTR MaLR 1 374 0 944 295 94 26 chr4 57202503 57202927 -127085735 - L2 LINE L2 -20 3293 2841 180 0 0 0 chr4 57203017 57203037 -127085625 + (CAACT)n Simple_repeat Simple_repeat 4 23 0 1558 131 34 11 chr4 57204378 57204645 -127084017 - L1PB4 LINE L1 -268 5888 5616 1472 165 0 74 chr4 57205336 57205633 -127083029 + AluSx SINE Alu 1 275 -37 279 0 0 0 chr4 57205634 57205665 -127082997 + (TC)n Simple_repeat Simple_repeat 2 32 0 1012 78 27 13 chr4 57205666 57206421 -127082241 + (TA)n Simple_repeat Simple_repeat 1 765 0 1779 181 6 54 chr4 57207468 57207822 -127080840 - MER1B DNA MER1_type 0 337 1 1901 127 84 28 chr4 57208128 57208483 -127080179 + THE1C LTR MaLR 1 375 0 1971 126 21 0 chr4 57209164 57209449 -127079213 + AluSx SINE Alu 1 291 -21 26 0 0 0 chr4 57210268 57210294 -127078368 + AT_rich Low_complexity Low_complexity 1 26 0 1772 177 10 3 chr4 57210368 57210678 -127077984 + AluJb SINE Alu 1 312 0 28 61 0 0 chr4 57211465 57211514 -127077148 + AT_rich Low_complexity Low_complexity 1 49 0 216 67 0 0 chr4 57211627 57211657 -127077005 + (TG)n Simple_repeat Simple_repeat 1 30 0 266 25 0 50 chr4 57212422 57212462 -127076200 + (TAGA)n Simple_repeat Simple_repeat 3 40 0 420 45 45 0 chr4 57212585 57212652 -127076010 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 414 337 67 11 chr4 57212908 57213175 -127075487 - L2 LINE L2 -1300 2014 1733 434 374 91 40 chr4 57213216 57213885 -127074777 + L2 LINE L2 2549 3271 -1 3219 53 2 2 chr4 57213902 57214313 -127074349 + L1PA5 LINE L1 5736 6146 -8 428 34 0 17 chr4 57215566 57215625 -127073037 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 2502 123 0 6 chr4 57216068 57216434 -127072228 + THE1B LTR MaLR 1 364 0 12265 68 0 7 chr4 57217258 57218860 -127069802 - L1PA3 LINE L1 -4555 1591 1 * 21130 37 2 1 chr4 57218854 57223422 -127065240 + L1PA3 LINE L1 1584 6154 -1 222 335 72 34 chr4 57223887 57224096 -127064566 - MIR SINE MIR -39 223 7 27 29 0 0 chr4 57225399 57225433 -127063229 + AT_rich Low_complexity Low_complexity 1 34 0 370 271 18 71 chr4 57225951 57226121 -127062541 + MER5A DNA MER1_type 1 161 -28 195 42 0 0 chr4 57226520 57226544 -127062118 + (TTTTTA)n Simple_repeat Simple_repeat 3 26 0 472 240 48 0 chr4 57226586 57226711 -127061951 - MIR SINE MIR -67 195 65 321 26 0 0 chr4 57226964 57227002 -127061660 + (TG)n Simple_repeat Simple_repeat 2 39 0 338 247 31 31 chr4 57228105 57228202 -127060460 + MIR3 SINE MIR 108 204 -4 435 248 20 10 chr4 57229330 57229431 -127059231 + L2 LINE L2 3195 3296 -17 762 304 46 8 chr4 57229577 57229840 -127058822 + MLT1J2 LTR MaLR 2 274 -176 24 0 0 0 chr4 57230220 57230244 -127058418 + AT_rich Low_complexity Low_complexity 1 24 0 194 351 43 11 chr4 57231661 57231755 -127056907 + MIR3 SINE MIR 62 158 -50 5568 131 27 15 chr4 57233637 57234888 -127053774 - L1PA16 LINE L1 0 6166 4918 2061 142 51 23 chr4 57235209 57235562 -127053100 + THE1B LTR MaLR 2 364 0 11780 92 4 2 chr4 57235562 57237139 -127051523 + THE1B-int LTR MaLR 1 1580 0 2121 127 48 22 chr4 57237139 57237494 -127051168 + THE1B LTR MaLR 1 364 0 25 31 0 0 chr4 57237542 57237574 -127051088 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr4 57239227 57239249 -127049413 + AT_rich Low_complexity Low_complexity 1 22 0 399 96 0 0 chr4 57240388 57240440 -127048222 + Alu SINE Alu 1 52 -248 924 126 7 0 chr4 57240440 57240575 -127048087 + AluSg/x SINE Alu 159 294 -18 1970 122 7 17 chr4 57241725 57242021 -127046641 + AluSx SINE Alu 1 293 -19 240 290 75 11 chr4 57242082 57242175 -127046487 - MIR SINE MIR -7 255 157 280 223 11 11 chr4 57242399 57242493 -127046169 + GA-rich Low_complexity Low_complexity 3 96 0 346 345 224 25 chr4 57243142 57243916 -127044746 + L3 LINE CR1 568 1495 -82 287 271 80 40 chr4 57244052 57244203 -127044459 - MIR SINE MIR -76 186 30 292 216 34 149 chr4 57245043 57245191 -127043471 - MER67D LTR ERV1 -28 486 356 1255 145 27 106 chr4 57245206 57245415 -127043247 - MER67C LTR ERV1 -316 394 242 2080 25 4 0 chr4 57245415 57245660 -127043002 + L1PA5 LINE L1 5909 6154 0 1255 145 27 106 chr4 57245660 57245885 -127042777 - MER67C LTR ERV1 -468 242 1 184 271 75 65 chr4 57246294 57246401 -127042261 + MIR SINE MIR 105 212 -50 40 49 0 0 chr4 57246588 57246649 -127042013 + AT_rich Low_complexity Low_complexity 1 61 0 670 320 26 26 chr4 57246721 57246949 -127041713 + MIR SINE MIR 17 244 -18 264 30 0 0 chr4 57246959 57246992 -127041670 + (CA)n Simple_repeat Simple_repeat 2 34 0 3134 58 0 15 chr4 57247019 57247430 -127041232 + L1PA7 LINE L1 5744 6148 -6 191 100 75 12 chr4 57247441 57247521 -127041141 + (TA)n Simple_repeat Simple_repeat 2 86 0 365 332 80 16 chr4 57247779 57247966 -127040696 + MIR SINE MIR 14 212 -50 955 201 122 8 chr4 57247982 57248054 -127040608 - LTR52 LTR ERVL -2 419 357 189 0 0 0 chr4 57248054 57248075 -127040587 + (CA)n Simple_repeat Simple_repeat 1 21 0 955 201 122 8 chr4 57248075 57248256 -127040406 - LTR52 LTR ERVL -64 357 137 477 163 22 22 chr4 57248831 57248923 -127039739 + MLT1D LTR MaLR 5 96 -409 207 0 0 0 chr4 57249517 57249540 -127039122 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 22 56 0 0 chr4 57250682 57250718 -127037944 + AT_rich Low_complexity Low_complexity 1 36 0 416 246 80 76 chr4 57251474 57251698 -127036964 + MLT1K LTR MaLR 271 495 -93 237 360 11 0 chr4 57252197 57252286 -127036376 + MLT1K LTR MaLR 77 166 -422 520 148 19 9 chr4 57252551 57252659 -127036003 + GA-rich Low_complexity Low_complexity 2 110 0 450 218 19 26 chr4 57252649 57252805 -127035857 + G-rich Low_complexity Low_complexity 3 157 0 * 625 130 40 34 chr4 57252778 57252955 -127035707 + GA-rich Low_complexity Low_complexity 2 179 0 707 239 37 95 chr4 57253300 57253736 -127034926 - MER57A LTR ERV1 -2 401 1 368 207 108 36 chr4 57253961 57254072 -127034590 - MIR SINE MIR -37 225 107 447 281 125 0 chr4 57254340 57254500 -127034162 - MLT1J1 LTR MaLR -266 180 1 25 0 0 0 chr4 57254597 57254622 -127034040 + AT_rich Low_complexity Low_complexity 1 25 0 1053 234 103 40 chr4 57254839 57255190 -127033472 - MLT1A2 LTR MaLR 0 374 2 204 158 0 0 chr4 57255771 57255809 -127032853 + A-rich Low_complexity Low_complexity 2 39 0 210 193 0 0 chr4 57256011 57256068 -127032594 + (TGGA)n Simple_repeat Simple_repeat 1 57 0 219 122 20 61 chr4 57256247 57256296 -127032366 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 766 198 149 24 chr4 57256760 57257048 -127031614 + MER5C DNA MER1_type 1 324 0 183 320 51 56 chr4 57258719 57258897 -127029765 + L2 LINE L2 2637 2813 -501 2037 124 3 29 chr4 57259523 57259830 -127028832 - AluSq SINE Alu -14 299 1 12247 30 6 0 chr4 57261081 57263337 -127025325 + L1PA4 LINE L1 3920 6179 0 2394 126 4 99 chr4 57263406 57263882 -127024780 - Tigger2a DNA MER2_type -3 431 1 7791 134 125 127 chr4 57264430 57265909 -127022753 + pTR5 LTR ERV1 56 549 -1889 274 176 198 33 chr4 57265909 57266000 -127022662 - L2 LINE L2 -7 3265 3160 7791 134 125 127 chr4 57266000 57267887 -127020775 + pTR5 LTR ERV1 549 2438 0 2374 92 0 0 chr4 57267906 57268210 -127020452 - AluY SINE Alu 0 311 8 1225 189 5 5 chr4 57268660 57268872 -127019790 - AluJb SINE Alu -31 281 70 189 74 0 0 chr4 57269858 57269885 -127018777 + (TG)n Simple_repeat Simple_repeat 2 28 0 201 39 0 0 chr4 57269965 57269991 -127018671 + (A)n Simple_repeat Simple_repeat 1 26 0 390 366 40 6 chr4 57270596 57270771 -127017891 + L2 LINE L2 2577 2757 -557 202 295 0 161 chr4 57270823 57270972 -127017690 + MER5A DNA MER1_type 65 189 0 328 393 66 0 chr4 57271035 57271218 -127017444 + L2 LINE L2 2866 3060 -212 187 318 127 27 chr4 57271359 57271469 -127017193 + L2 LINE L2 3148 3268 -4 2148 74 3 14 chr4 57273700 57273983 -127014679 - AluY SINE Alu -31 280 1 29 78 0 0 chr4 57274460 57274524 -127014138 + AT_rich Low_complexity Low_complexity 1 64 0 313 191 14 204 chr4 57274929 57275013 -127013649 - MIR3 SINE MIR -3 205 159 1958 135 0 0 chr4 57275013 57275294 -127013368 + AluSx SINE Alu 4 284 -28 313 191 14 204 chr4 57275294 57275356 -127013306 - MIR3 SINE MIR -49 159 87 232 366 11 0 chr4 57275729 57275822 -127012840 + MLT1J2 LTR MaLR 69 162 -288 336 359 26 13 chr4 57276682 57276838 -127011824 + MIR SINE MIR 34 191 -71 229 204 0 0 chr4 57276880 57276934 -127011728 + T-rich Low_complexity Low_complexity 3 56 0 754 212 35 0 chr4 57277197 57277367 -127011295 + MER58A DNA MER1_type 46 221 -3 22 56 0 0 chr4 57277566 57277602 -127011060 + AT_rich Low_complexity Low_complexity 1 36 0 240 259 168 53 chr4 57277623 57277754 -127010908 - L2 LINE L2 -20 3293 3148 1659 159 43 30 chr4 57277789 57278090 -127010572 - AluJo SINE Alu -3 309 5 729 287 22 13 chr4 57278184 57278414 -127010248 - MIR SINE MIR -8 254 23 542 344 147 3 chr4 57278452 57278780 -127009882 - L2 LINE L2 -301 3012 2640 431 296 87 89 chr4 57278781 57279275 -127009387 + MLT1J LTR MaLR 1 493 -18 311 286 33 0 chr4 57279288 57279379 -127009283 - L2 LINE L2 -665 2649 2556 1065 191 4 76 chr4 57280496 57280732 -127007930 - MER20 DNA MER1_type 0 219 1 211 217 0 0 chr4 57281622 57281668 -127006994 + (TTCA)n Simple_repeat Simple_repeat 4 49 0 460 314 33 76 chr4 57282087 57282390 -127006272 - L2 LINE L2 -563 2751 2462 214 254 32 0 chr4 57283576 57283639 -127005023 + (TAGG)n Simple_repeat Simple_repeat 1 65 0 432 289 59 32 chr4 57283769 57283956 -127004706 - MIR SINE MIR -64 198 7 417 252 10 10 chr4 57285791 57285894 -127002768 + MER94 DNA DNA 31 133 -1 232 224 0 0 chr4 57286379 57286428 -127002234 - Tigger3(Golem) DNA MER2_type -1315 1714 1666 32 26 0 0 chr4 57286503 57286542 -127002120 + AT_rich Low_complexity Low_complexity 1 39 0 358 0 0 75 chr4 57286648 57286715 -127001947 + (TA)n Simple_repeat Simple_repeat 2 63 0 24 53 0 0 chr4 57286818 57286856 -127001806 + AT_rich Low_complexity Low_complexity 1 38 0 359 358 53 33 chr4 57286952 57287251 -127001411 - MLT1J LTR MaLR -50 461 157 341 296 31 25 chr4 57288452 57288611 -127000051 + L1M3c LINE L1 1 160 -5981 1290 138 83 0 chr4 57289032 57289272 -126999390 + L1MA9 LINE L1 6048 6307 -5 4733 35 2 0 chr4 57289821 57290385 -126998277 - L1PA5 LINE L1 -5 6149 5585 544 332 81 18 chr4 57290749 57290972 -126997690 - MIR SINE MIR -24 238 2 730 159 11 28 chr4 57292256 57292438 -126996224 + CT-rich Low_complexity Low_complexity 1 179 0 300 231 0 0 chr4 57292438 57292490 -126996172 + polypyrimidine Low_complexity Low_complexity 3 54 0 322 343 95 18 chr4 57293947 57294116 -126994546 - MIR SINE MIR -61 201 20 324 224 105 0 chr4 57294202 57294278 -126994384 - L2 LINE L2 0 3313 3230 468 280 48 89 chr4 57294286 57294361 -126994301 - MLT1J LTR MaLR -208 303 226 2201 70 24 0 chr4 57294361 57294659 -126994003 + AluY SINE Alu 1 305 -6 468 280 48 89 chr4 57294659 57294897 -126993765 - MLT1J LTR MaLR -285 226 3 2304 84 3 3 chr4 57295251 57295559 -126993103 + AluY SINE Alu 1 308 -3 563 315 97 52 chr4 57298326 57298707 -126989955 - MLT1K LTR MaLR -14 574 177 398 272 125 36 chr4 57299505 57299729 -126988933 - L1MC4 LINE L1 -188 7854 7611 572 157 0 9 chr4 57299798 57299906 -126988756 + FLAM_C SINE Alu 1 107 -36 195 100 0 0 chr4 57299920 57299950 -126988712 + (GA)n Simple_repeat Simple_repeat 2 31 0 501 320 29 67 chr4 57300167 57300483 -126988179 - L1MC4 LINE L1 -1040 7002 6699 32 26 0 0 chr4 57301241 57301280 -126987382 + AT_rich Low_complexity Low_complexity 1 39 0 28 48 0 0 chr4 57302306 57302348 -126986314 + AT_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr4 57302512 57302538 -126986124 + AT_rich Low_complexity Low_complexity 1 26 0 2171 104 3 0 chr4 57303289 57303578 -126985084 - AluSp SINE Alu -23 290 1 370 350 33 17 chr4 57303923 57304103 -126984559 + L3 LINE CR1 1381 1563 -14 294 364 56 28 chr4 57304215 57304358 -126984304 + L2 LINE L2 3122 3268 -4 21 36 0 0 chr4 57304706 57304734 -126983928 + AT_rich Low_complexity Low_complexity 1 28 0 589 337 116 0 chr4 57304904 57305207 -126983455 + LTR16A LTR ERVL 113 450 0 2185 213 32 41 chr4 57305817 57306432 -126982230 + L1MB3 LINE L1 3623 4232 -1914 23 0 0 0 chr4 57306432 57306455 -126982207 + AT_rich Low_complexity Low_complexity 1 23 0 21195 66 6 1 chr4 57306460 57310060 -126978602 - L1PA6 LINE L1 -11 6143 2532 4679 76 1 14 chr4 57310060 57310718 -126977944 + L1PA6 LINE L1 1871 2520 -3626 4585 215 46 12 chr4 57310716 57312612 -126976050 + L1MB3 LINE L1 4217 6182 -1 * 243 373 28 21 chr4 57313182 57313324 -126975338 + MIR3 SINE MIR 19 161 -47 242 284 40 14 chr4 57314490 57314564 -126974098 - MIR3 SINE MIR -29 179 104 249 386 71 32 chr4 57317108 57317416 -126971246 + L2 LINE L2 1618 1937 -1377 460 355 39 15 chr4 57317460 57317691 -126970971 - MIR SINE MIR 0 262 30 405 370 35 6 chr4 57317783 57317956 -126970706 + MER5B DNA MER1_type 1 178 0 287 309 89 94 chr4 57318352 57318724 -126969938 + L2 LINE L2 2897 3266 -6 419 320 108 12 chr4 57318760 57318986 -126969676 - MIR SINE MIR 0 262 18 24 0 0 0 chr4 57319601 57319625 -126969037 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr4 57320728 57320758 -126967904 + AT_rich Low_complexity Low_complexity 1 30 0 258 317 41 49 chr4 57321131 57321254 -126967408 - MIR SINE MIR -116 146 25 191 311 14 0 chr4 57321279 57321353 -126967309 - MIR SINE MIR -89 173 99 18768 31 0 0 chr4 57321412 57324432 -126964230 - L1PA3 LINE L1 0 6155 3135 16219 45 0 1 chr4 57324432 57326467 -126962195 + L1PA3 LINE L1 1109 3142 -3004 30 59 0 0 chr4 57327221 57327272 -126961390 + AT_rich Low_complexity Low_complexity 1 51 0 184 239 65 0 chr4 57327822 57327868 -126960794 + MIR SINE MIR 193 241 -21 2447 61 3 19 chr4 57328069 57328380 -126960282 - AluY SINE Alu -4 307 2 26 0 0 0 chr4 57329344 57329370 -126959292 + AT_rich Low_complexity Low_complexity 1 26 0 359 354 71 75 chr4 57329947 57330484 -126958178 + L2 LINE L2 2434 2968 -346 336 102 0 0 chr4 57330582 57330631 -126958031 + (TATAA)n Simple_repeat Simple_repeat 4 52 0 193 430 18 24 chr4 57330955 57331120 -126957542 - L3 LINE CR1 -3 1574 1411 837 233 143 16 chr4 57331125 57331370 -126957292 - LTR52 LTR ERVL -131 290 15 1108 228 39 7 chr4 57331375 57331682 -126956980 + L1MC3 LINE L1 4424 4740 -1406 284 206 25 44 chr4 57331682 57331842 -126956820 + (TATATG)n Simple_repeat Simple_repeat 3 159 0 1668 237 49 31 chr4 57331851 57332231 -126956431 - MLT2D LTR ERVL -20 534 1 8243 193 120 50 chr4 57332234 57334167 -126954495 + L1MC3 LINE L1 4738 6533 -1252 189 107 0 0 chr4 57334167 57334195 -126954467 + (CA)n Simple_repeat Simple_repeat 1 28 0 8243 193 120 50 chr4 57334195 57334415 -126954247 + L1MC3 LINE L1 6533 6736 -1049 254 281 22 11 chr4 57334415 57334504 -126954158 + MLT1F1 LTR MaLR 33 122 -445 8243 193 120 50 chr4 57334504 57335008 -126953654 + L1MC3 LINE L1 6736 7203 -582 2192 121 0 10 chr4 57335008 57335321 -126953341 + AluSx SINE Alu 1 310 -2 8243 193 120 50 chr4 57335321 57335403 -126953259 + L1MC3 LINE L1 7203 7765 -20 23 0 0 0 chr4 57335408 57335431 -126953231 + AT_rich Low_complexity Low_complexity 1 23 0 412 344 38 62 chr4 57336027 57336367 -126952295 - MLT1H LTR MaLR -195 354 23 221 315 27 0 chr4 57336381 57336454 -126952208 + L2 LINE L2 3224 3298 -15 2448 200 22 6 chr4 57336483 57336974 -126951688 - L1PA16 LINE L1 0 6166 5668 1334 253 50 31 chr4 57336990 57337508 -126951154 - L1P LINE L1 -2822 3324 2797 572 361 40 9 chr4 57338266 57338590 -126950072 + LTR16A LTR ERVL 105 438 -12 201 196 20 0 chr4 57339312 57339363 -126949299 + (TA)n Simple_repeat Simple_repeat 1 52 0 201 382 48 55 chr4 57340630 57341208 -126947454 + L2 LINE L2 223 796 -2518 2175 160 25 6 chr4 57341269 57341626 -126947036 + THE1B LTR MaLR 1 364 0 263 176 39 0 chr4 57341626 57341677 -126946985 + THE1B-int LTR MaLR 1 53 -1527 599 182 0 0 chr4 57341677 57341776 -126946886 + LTR18A LTR ERVL 1 99 -258 5103 126 3 1 chr4 57341777 57342506 -126946156 + THE1B-int LTR MaLR 851 1580 0 2068 169 22 6 chr4 57342506 57342862 -126945800 + THE1B LTR MaLR 1 362 -2 189 368 19 28 chr4 57343176 57343282 -126945380 + L2 LINE L2 1233 1337 -1977 1495 263 113 19 chr4 57344063 57344736 -126943926 - L1M4 LINE L1 -4900 1955 1220 460 223 54 54 chr4 57345002 57345168 -126943494 - L1M4 LINE L1 -5635 1224 1059 25 65 0 0 chr4 57345204 57345250 -126943412 + AT_rich Low_complexity Low_complexity 1 46 0 201 374 45 28 chr4 57345252 57345431 -126943231 + L2 LINE L2 2418 2599 -715 381 340 56 63 chr4 57345721 57345989 -126942673 + L2 LINE L2 2936 3201 -71 396 268 87 112 chr4 57346072 57346464 -126942198 + L2 LINE L2 2924 3305 -8 392 363 41 0 chr4 57346907 57347053 -126941609 + L2 LINE L2 3121 3272 0 26 0 0 0 chr4 57347558 57347584 -126941078 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr4 57348168 57348191 -126940471 + AT_rich Low_complexity Low_complexity 1 23 0 180 215 123 62 chr4 57349055 57349120 -126939542 + L3 LINE CR1 888 956 -621 1945 130 3 10 chr4 57349588 57349888 -126938774 + AluSc SINE Alu 1 298 -11 1110 214 23 5 chr4 57350131 57350351 -126938311 - MER58A DNA MER1_type 0 224 1 208 343 14 0 chr4 57350362 57350432 -126938230 - MER5B DNA MER1_type -3 175 105 23 0 0 0 chr4 57350473 57350496 -126938166 + AT_rich Low_complexity Low_complexity 1 23 0 243 327 99 10 chr4 57351032 57351133 -126937529 + L2 LINE L2 3201 3310 -3 279 114 0 0 chr4 57352094 57352138 -126936524 + (TG)n Simple_repeat Simple_repeat 2 45 0 504 261 258 14 chr4 57352185 57352480 -126936182 - L1MC4a LINE L1 -1866 5942 5576 225 214 14 29 chr4 57352524 57352594 -126936068 - L1MC4a LINE L1 -2359 5449 5381 1388 156 0 0 chr4 57352604 57352822 -126935840 - THE1B LTR MaLR 0 364 147 1072 179 0 0 chr4 57353055 57353223 -126935439 - THE1B LTR MaLR -196 168 1 2251 112 0 9 chr4 57353223 57353554 -126935108 - THE1B-int LTR MaLR 0 1580 1253 909 113 0 0 chr4 57353613 57353737 -126934925 + AluJb SINE Alu 1 124 -188 2922 84 47 5 chr4 57353738 57354144 -126934518 - THE1B-int LTR MaLR -1156 424 2 2550 124 0 0 chr4 57354146 57354509 -126934153 - THE1B LTR MaLR -1 363 1 979 305 128 8 chr4 57354554 57355031 -126933631 + L2 LINE L2 2763 3313 0 180 219 0 0 chr4 57356376 57356417 -126932245 + (TATATG)n Simple_repeat Simple_repeat 5 45 0 191 319 87 0 chr4 57356884 57356953 -126931709 + MIR SINE MIR 104 178 -84 3515 131 37 69 chr4 57357159 57357514 -126931148 - L1PA13 LINE L1 -192 5971 5649 2890 79 69 9 chr4 57357514 57357933 -126930729 + MLT2A1 LTR ERVL 1 444 0 3515 131 37 69 chr4 57357933 57358286 -126930376 - L1PA13 LINE L1 -514 5649 5286 22 0 0 0 chr4 57359044 57359066 -126929596 + AT_rich Low_complexity Low_complexity 1 22 0 2258 246 57 106 chr4 57359154 57360141 -126928521 - LTR52-int LTR ERVL -2574 982 45 264 322 22 11 chr4 57360194 57360284 -126928378 + MIR SINE MIR 2 92 -170 717 278 76 26 chr4 57360378 57360720 -126927942 - LTR52 LTR ERVL -50 371 13 209 394 58 0 chr4 57360897 57361001 -126927661 + L2 LINE L2 3093 3202 -70 186 313 38 25 chr4 57361169 57361249 -126927413 + MIR SINE MIR 66 146 -116 576 273 56 32 chr4 57362101 57362317 -126926345 + MIR SINE MIR 15 235 -27 21 0 0 0 chr4 57362860 57362881 -126925781 + AT_rich Low_complexity Low_complexity 1 21 0 13477 208 18 8 chr4 57363079 57364169 -126924493 + L1PA15 LINE L1 2210 3288 -2877 213 39 0 0 chr4 57364169 57364195 -126924467 + (CAA)n Simple_repeat Simple_repeat 2 27 0 13477 208 18 8 chr4 57364195 57367008 -126921654 + L1PA15 LINE L1 3288 6159 -6 1250 136 99 85 chr4 57367054 57367348 -126921314 - AluJo SINE Alu -14 298 1 641 314 34 0 chr4 57367619 57367823 -126920839 - MIR SINE MIR -26 236 26 721 286 54 59 chr4 57368027 57368453 -126920209 + L1MEc LINE L1 94 517 -5879 30 27 0 0 chr4 57368874 57368911 -126919751 + AT_rich Low_complexity Low_complexity 1 37 0 1347 215 86 50 chr4 57368992 57369374 -126919288 + MSTD LTR MaLR 1 396 0 189 74 0 0 chr4 57369837 57369864 -126918798 + (TA)n Simple_repeat Simple_repeat 1 27 0 300 196 0 98 chr4 57369865 57369967 -126918695 + L1MC4 LINE L1 6612 6703 -1339 * 319 303 33 16 chr4 57369887 57370009 -126918653 - L1MC4 LINE L1 -1337 6705 6582 1920 261 45 40 chr4 57370267 57370849 -126917813 - MLT1E LTR MaLR -8 585 1 24 53 0 0 chr4 57371078 57371116 -126917546 + AT_rich Low_complexity Low_complexity 1 38 0 204 152 15 45 chr4 57371414 57371480 -126917182 + (TAA)n Simple_repeat Simple_repeat 2 65 0 25 31 0 0 chr4 57371582 57371614 -126917048 + AT_rich Low_complexity Low_complexity 1 32 0 865 236 14 28 chr4 57371640 57371856 -126916806 + L1PA16 LINE L1 4751 4963 -1183 2239 181 8 5 chr4 57371858 57372239 -126916423 + MSTB LTR MaLR 1 382 -44 4382 156 44 3 chr4 57372247 57373023 -126915639 + L1PA16 LINE L1 5339 6146 -20 32 43 0 0 chr4 57373023 57373069 -126915593 + AT_rich Low_complexity Low_complexity 1 46 0 1051 80 0 0 chr4 57375685 57375823 -126912839 + AluSp/q SINE Alu 175 312 -1 310 268 49 0 chr4 57375823 57375905 -126912757 - L1MC4 LINE L1 -1342 6700 6615 305 326 0 0 chr4 57375826 57375915 -126912747 + L1MC4 LINE L1 6614 6702 -1340 * 455 307 49 42 chr4 57377289 57377703 -126910959 + MLT1K LTR MaLR 117 566 -22 199 77 26 26 chr4 57378336 57378375 -126910287 + (TG)n Simple_repeat Simple_repeat 2 40 0 595 250 33 7 chr4 57378712 57378864 -126909798 + L2 LINE L2 2580 2735 -579 760 294 146 6 chr4 57378990 57379306 -126909356 + L2 LINE L2 2954 3313 0 1750 184 0 3 chr4 57380305 57380615 -126908047 - AluJb SINE Alu -3 309 1 463 326 120 38 chr4 57381370 57382000 -126906662 - L2 LINE L2 -64 3208 2535 1894 151 109 40 chr4 57382154 57382558 -126906104 + MSTB1 LTR MaLR 1 432 0 23 54 0 0 chr4 57382665 57382702 -126905960 + AT_rich Low_complexity Low_complexity 1 37 0 514 193 0 28 chr4 57383804 57383913 -126904749 - FLAM_A SINE Alu -9 133 28 565 199 88 15 chr4 57383916 57384052 -126904610 - MSTD LTR MaLR -49 347 202 * 1170 126 14 37 chr4 57384040 57384254 -126904408 - MER50 LTR ERV1 -525 209 1 1558 97 35 23 chr4 57384683 57384941 -126903721 - L1PA13 LINE L1 -7 6156 5896 315 348 73 32 chr4 57385407 57385654 -126903008 - MIR SINE MIR -5 257 1 182 408 0 0 chr4 57387077 57387153 -126901509 + L2 LINE L2 2986 3061 -211 652 203 127 0 chr4 57389736 57389894 -126898768 + MLT1C LTR MaLR 22 199 -268 3232 199 50 6 chr4 57389898 57390077 -126898585 - MER67C LTR ERV1 -5 705 535 2354 104 0 0 chr4 57390077 57390385 -126898277 - AluSg SINE Alu -2 308 1 3232 199 50 6 chr4 57390385 57390879 -126897783 - MER67C LTR ERV1 -175 535 2 953 192 26 1 chr4 57390880 57391119 -126897543 + MLT1C LTR MaLR 194 467 0 375 269 30 60 chr4 57391174 57391240 -126897422 + MIR SINE MIR 133 195 -67 2973 157 15 44 chr4 57391240 57391783 -126896879 - MER1A DNA MER1_type 0 527 1 375 269 30 60 chr4 57391783 57391850 -126896812 + MIR SINE MIR 195 262 0 600 308 25 10 chr4 57392437 57392635 -126896027 - MIR SINE MIR -8 254 54 357 354 102 23 chr4 57393070 57393285 -126895377 + HAL1 LINE L1 113 344 -2163 1971 147 123 8 chr4 57393320 57393702 -126894960 - MSTA LTR MaLR 0 428 3 23 33 0 0 chr4 57394062 57394092 -126894570 + AT_rich Low_complexity Low_complexity 1 30 0 22 70 0 0 chr4 57394421 57394464 -126894198 + AT_rich Low_complexity Low_complexity 1 43 0 29 0 0 0 chr4 57394503 57394532 -126894130 + AT_rich Low_complexity Low_complexity 1 29 0 285 312 41 47 chr4 57394577 57394738 -126893924 - MIR SINE MIR -68 140 2 183 375 18 48 chr4 57396582 57396750 -126891912 - MIR SINE MIR -5 257 95 372 216 30 60 chr4 57397355 57397489 -126891173 + HAL1b LINE L1 364 493 -855 1998 128 0 38 chr4 57397514 57397834 -126890828 + AluSx SINE Alu 1 308 -4 8538 167 3 2 chr4 57397908 57399414 -126889248 - L1P LINE L1 -1237 4909 3402 1111 379 16 4 chr4 57399668 57400183 -126888479 - HERV16 LTR ERVL -2096 2900 2380 1504 317 40 40 chr4 57400187 57400535 -126888127 - HERV16 LTR ERVL -3852 1144 797 2070 90 11 0 chr4 57400535 57400850 -126887812 - AluY SINE Alu 0 318 1 1504 317 40 40 chr4 57400850 57401279 -126887383 - HERV16 LTR ERVL -4198 798 366 615 303 51 20 chr4 57401944 57402343 -126886319 - LTR16B LTR ERVL -2 462 8 1593 132 82 25 chr4 57402448 57402729 -126885933 + AluJb SINE Alu 1 297 -15 22 0 0 0 chr4 57402880 57402902 -126885760 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 57403108 57403136 -126885526 + AT_rich Low_complexity Low_complexity 1 28 0 240 265 91 39 chr4 57403136 57403445 -126885217 + L1ME3A LINE L1 4110 4434 -1712 220 282 28 14 chr4 57403909 57403980 -126884682 - L2 LINE L2 0 3313 3242 2145 127 36 28 chr4 57404491 57404852 -126883810 + THE1B LTR MaLR 1 364 0 1071 236 31 0 chr4 57406172 57406430 -126882232 - LTR56 LTR ERV1 -167 278 13 282 389 62 10 chr4 57406685 57406878 -126881784 + L2 LINE L2 2674 2876 -438 483 291 99 38 chr4 57407792 57408084 -126880578 + MLT1H LTR MaLR 46 355 -194 239 245 0 0 chr4 57408098 57408147 -126880515 + MLT1H LTR MaLR 501 549 0 1814 174 22 87 chr4 57408517 57408964 -126879698 - MER34 LTR ERV1 0 542 125 3408 261 57 30 chr4 57409071 57410138 -126878524 - MER69B DNA AcHobo -52 1174 79 1098 253 146 32 chr4 57410283 57410721 -126877941 - MLT1D LTR MaLR -17 488 1 209 309 0 0 chr4 57411592 57411647 -126877015 - L2 LINE L2 0 3272 3218 367 356 79 43 chr4 57411748 57412077 -126876585 - L2 LINE L2 -5 3267 2927 2503 122 36 0 chr4 57413938 57414300 -126874362 - THE1C LTR MaLR 0 375 1 252 307 24 66 chr4 57414336 57414502 -126874160 - MIR SINE MIR -67 195 37 638 288 97 53 chr4 57414902 57415263 -126873399 + L2 LINE L2 2937 3313 0 436 270 78 60 chr4 57415305 57415508 -126873154 + L1ME3A LINE L1 4748 4946 -1200 426 20 0 0 chr4 57415508 57415559 -126873103 + (GA)n Simple_repeat Simple_repeat 2 52 0 1612 165 50 4 chr4 57415559 57415819 -126872843 - AluJb SINE Alu -34 278 7 436 270 78 60 chr4 57415819 57416162 -126872500 + L1ME3A LINE L1 4945 5305 -841 418 280 36 20 chr4 57416195 57416350 -126872312 + L1ME3A LINE L1 5377 5529 -635 42 36 0 0 chr4 57416399 57416455 -126872207 + AT_rich Low_complexity Low_complexity 1 56 0 341 371 20 20 chr4 57416514 57416665 -126871997 + MLT1I LTR MaLR 71 221 -188 232 294 15 0 chr4 57416782 57416850 -126871812 + MLT1I LTR MaLR 339 407 -2 364 309 92 35 chr4 57416852 57417134 -126871528 + L1ME3A LINE L1 5614 5911 -259 719 288 118 18 chr4 57417740 57418080 -126870582 - MLT1J2 LTR MaLR 0 450 77 1758 171 3 20 chr4 57418356 57418660 -126870002 - AluJo SINE Alu -12 300 2 301 410 40 6 chr4 57418855 57419028 -126869634 + MIR3 SINE MIR 3 181 -27 509 259 93 31 chr4 57419310 57419503 -126869159 + L2 LINE L2 3104 3308 -5 333 0 0 0 chr4 57420756 57420793 -126867869 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr4 57421358 57421379 -126867283 + AT_rich Low_complexity Low_complexity 1 21 0 254 367 188 0 chr4 57422299 57422517 -126866145 - MIR SINE MIR 0 262 4 623 275 138 9 chr4 57423145 57423363 -126865299 - MIR SINE MIR -2 260 15 545 339 31 31 chr4 57424064 57424350 -126864312 + L2 LINE L2 3028 3313 0 2109 130 0 3 chr4 57424495 57424802 -126863860 - AluSx SINE Alu -6 306 1 22 56 0 0 chr4 57424888 57424924 -126863738 + AT_rich Low_complexity Low_complexity 1 36 0 8958 35 18 1 chr4 57425146 57426464 -126862198 + L1P2 LINE L1 4253 5591 -563 1676 59 5 32 chr4 57426565 57426785 -126861877 - AluSp SINE Alu -99 214 1 2353 84 7 0 chr4 57427329 57427626 -126861036 - AluSg SINE Alu -11 299 1 1062 149 6 17 chr4 57427689 57427864 -126860798 - AluJo SINE Alu -20 292 120 295 197 0 0 chr4 57427888 57427954 -126860708 - Alu SINE Alu 0 302 237 2563 50 3 0 chr4 57528409 57528708 -126759954 + AluY SINE Alu 1 300 -11 2026 164 28 3 chr4 57529189 57529543 -126759119 + MLT1A1 LTR MaLR 1 363 -2 2265 113 10 3 chr4 57529674 57529976 -126758686 - AluSx SINE Alu -8 304 1 2292 81 3 24 chr4 57530070 57530368 -126758294 - AluSp SINE Alu -21 292 1 285 191 0 16 chr4 57530698 57530761 -126757901 - LTR67 LTR ERVL -39 518 457 372 367 50 10 chr4 57530805 57531004 -126757658 - L2 LINE L2 0 3313 3107 539 172 0 0 chr4 57531529 57531616 -126757046 - AluS SINE Alu -225 88 2 2542 80 3 3 chr4 57531620 57531954 -126756708 - AluSp SINE Alu 0 334 1 1681 145 16 46 chr4 57531954 57532258 -126756404 - AluJo SINE Alu -17 295 1 2009 93 0 0 chr4 57532655 57532903 -126755759 + AluSc SINE Alu 1 248 -61 216 174 43 14 chr4 57532904 57532973 -126755689 + (TATAG)n Simple_repeat Simple_repeat 4 74 0 22 35 0 0 chr4 57533007 57533036 -126755626 + AT_rich Low_complexity Low_complexity 1 29 0 323 236 181 31 chr4 57533782 57533909 -126754753 - MIR SINE MIR 0 262 117 280 273 13 0 chr4 57534237 57534314 -126754348 + MIR SINE MIR 56 133 -129 22 35 0 0 chr4 57534340 57534369 -126754293 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr4 57534930 57534965 -126753697 + GC_rich Low_complexity Low_complexity 1 35 0 26 50 0 0 chr4 57535316 57535356 -126753306 + GC_rich Low_complexity Low_complexity 1 40 0 244 196 0 0 chr4 57535566 57535612 -126753050 + (CGG)n Simple_repeat Simple_repeat 3 48 0 3350 80 120 35 chr4 57536399 57536947 -126751715 + LTR61 LTR ERV1 1 595 0 573 142 31 63 chr4 57537255 57537382 -126751280 + FLAM_A SINE Alu 10 132 -10 1529 91 5 14 chr4 57637465 57637675 -126650987 + AluSg/x SINE Alu 81 288 -22 241 356 0 11 chr4 57637676 57637763 -126650899 - MIR SINE MIR -157 105 20 24 71 0 35 chr4 57639322 57639407 -126649255 + AT_rich Low_complexity Low_complexity 1 82 0 215 223 397 16 chr4 57640316 57640437 -126648225 + MIR SINE MIR 47 213 -49 404 97 24 81 chr4 57640926 57641050 -126647612 + (GGAA)n Simple_repeat Simple_repeat 1 117 0 30614 60 3 0 chr4 57641053 57645155 -126643507 + L1P LINE L1 7 4122 -2024 216 217 24 36 chr4 57646329 57646412 -126642250 + (TATATG)n Simple_repeat Simple_repeat 3 84 0 * 219 178 44 0 chr4 57646391 57646436 -126642226 + (CA)n Simple_repeat Simple_repeat 2 48 0 287 338 151 5 chr4 57646596 57646815 -126641847 + MIR SINE MIR 12 262 0 1493 39 0 0 chr4 57647134 57647315 -126641347 + L1PA2 LINE L1 5974 6154 -1 21 0 0 0 chr4 57647829 57647850 -126640812 + AT_rich Low_complexity Low_complexity 1 21 0 847 298 9 4 chr4 57647938 57648166 -126640496 - MIR SINE MIR -33 229 1 394 324 94 68 chr4 57649842 57650194 -126638468 - L2 LINE L2 -12 3260 2900 1387 229 46 40 chr4 57650279 57650632 -126638030 + MLT1A2 LTR MaLR 1 358 -16 1996 201 33 79 chr4 57650632 57651213 -126637449 - MLT2B3 LTR ERVL 0 554 1 1387 229 46 40 chr4 57651213 57651231 -126637431 + MLT1A2 LTR MaLR 358 374 0 252 282 0 55 chr4 57651784 57651894 -126636768 + HAL1 LINE L1 1413 1516 -991 1667 246 47 2 chr4 57652450 57652921 -126635741 + HAL1 LINE L1 1385 1876 -631 387 298 55 0 chr4 57653627 57653808 -126634854 - LTR50 LTR ERVL -112 683 493 291 250 25 42 chr4 57653977 57654097 -126634565 - LTR50 LTR ERVL -677 118 1 412 252 17 26 chr4 57654520 57654635 -126634027 + MIR SINE MIR 36 149 -113 273 337 0 11 chr4 57655338 57655427 -126633235 - L2 LINE L2 0 3272 3185 973 219 0 5 chr4 57656020 57656221 -126632441 - MER20 DNA MER1_type 0 219 20 509 293 29 0 chr4 57656483 57656623 -126632039 - MIR SINE MIR -19 243 100 1259 152 25 8 chr4 57656752 57656995 -126631667 - L1MA8 LINE L1 -32 6259 6013 2200 165 28 8 chr4 57657150 57657538 -126631124 + MSTD LTR MaLR 1 396 0 5058 162 21 10 chr4 57657969 57658936 -126629726 + L1P LINE L1 1 977 -5169 8925 35 4 1 chr4 57659067 57660927 -126627735 + L1PA4 LINE L1 4293 6155 0 219 247 0 0 chr4 57660945 57661018 -126627644 + GA-rich Low_complexity Low_complexity 3 75 0 292 276 0 0 chr4 57662032 57662090 -126626572 + L2 LINE L2 3161 3218 -54 446 216 294 0 chr4 57662093 57662246 -126626416 - MER58A DNA MER1_type -1 223 26 557 231 82 11 chr4 57662548 57662730 -126625932 + MLT1J LTR MaLR 3 197 -314 239 263 26 70 chr4 57662849 57663005 -126625657 + MLT1J LTR MaLR 317 465 -46 2097 185 42 12 chr4 57663628 57664090 -126624572 - L1MA9 LINE L1 -7 7326 6848 1592 204 3 13 chr4 57664090 57664389 -126624273 - AluJo SINE Alu -16 296 1 2097 185 42 12 chr4 57664389 57664408 -126624254 - L1MA9 LINE L1 -485 6848 6831 7200 204 28 41 chr4 57664409 57664640 -126624022 - L1MA9 LINE L1 -725 6608 6375 2233 98 17 7 chr4 57664640 57664937 -126623725 - AluSp SINE Alu -13 300 1 7200 204 28 41 chr4 57664937 57667486 -126621176 - L1MA9 LINE L1 -958 6375 3912 1593 230 26 23 chr4 57667486 57667644 -126621018 + MSTD LTR MaLR 1 157 -239 2319 135 5 22 chr4 57667644 57668014 -126620648 - THE1B LTR MaLR 0 364 1 11283 102 8 4 chr4 57668014 57669588 -126619074 - THE1B-int LTR MaLR 0 1580 1 1103 237 51 145 chr4 57669588 57670002 -126618660 - THE1B LTR MaLR 0 375 1 1593 230 26 23 chr4 57670002 57670228 -126618434 + MSTD LTR MaLR 156 388 -8 1650 264 41 2 chr4 57670232 57670743 -126617919 - L1MA9 LINE L1 -3251 3916 3386 3444 153 27 0 chr4 57670746 57671372 -126617290 - L1MA4 LINE L1 -11 6289 5647 2058 152 31 0 chr4 57671399 57671755 -126616907 + MSTA LTR MaLR 1 367 -61 6840 45 7 1 chr4 57671770 57672653 -126616009 - L1PA5 LINE L1 -13 6141 5254 14886 43 5 1 chr4 57671771 57674373 -126614289 - L1PA5 LINE L1 -14 6140 3530 262 77 0 169 chr4 57674373 57674392 -126614270 + MSTA LTR MaLR 375 396 -32 1720 102 90 8 chr4 57674392 57674683 -126613979 - AluSg SINE Alu 0 310 12 262 77 0 169 chr4 57674683 57674728 -126613934 + MSTA LTR MaLR 396 428 0 1944 154 20 36 chr4 57674763 57675256 -126613406 - L1MA4 LINE L1 -655 5645 5146 2460 268 52 40 chr4 57675258 57677336 -126611326 - L1MA9 LINE L1 -3766 3401 1619 1850 164 13 16 chr4 57677833 57678145 -126610517 + AluSx SINE Alu 1 311 -1 304 236 0 0 chr4 57678509 57678564 -126610098 + L2 LINE L2 3191 3245 -27 1234 176 9 0 chr4 57678915 57679148 -126609514 + L1PA12 LINE L1 1 235 -7346 * 7332 233 41 41 chr4 57679144 57682153 -126606509 + L1PA12 LINE L1 608 2486 -4098 1295 159 8 35 chr4 57682153 57682411 -126606251 + L1PA13 LINE L1 5894 6144 -19 504 230 40 7 chr4 57683883 57684035 -126604627 - MER103 DNA DNA -9 157 1 14973 88 1 6 chr4 57684363 57686603 -126602059 + L1PA6 LINE L1 972 3200 -2946 * 40865 35 21 1 chr4 57686599 57692630 -126596032 + L1HS LINE L1 1 6155 0 215 241 0 0 chr4 57692630 57692684 -126595978 + A-rich Low_complexity Low_complexity 1 54 0 16113 74 1 0 chr4 57692684 57695653 -126593009 + L1PA6 LINE L1 3179 6144 -10 25 0 0 0 chr4 57695653 57695678 -126592984 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr4 57695825 57695849 -126592813 + AT_rich Low_complexity Low_complexity 1 24 0 237 333 37 23 chr4 57695893 57696109 -126592553 + L1MEd LINE L1 987 1205 -4914 566 183 50 104 chr4 57696267 57696377 -126592285 + MER20 DNA MER1_type 29 126 -93 17298 27 8 12 chr4 57696377 57699235 -126589427 + L1PA4 LINE L1 3323 6177 0 566 183 50 104 chr4 57699235 57699325 -126589337 + MER20 DNA MER1_type 126 219 0 653 134 0 0 chr4 57699397 57699494 -126589168 + AluSg SINE Alu 1 97 -213 2355 105 0 6 chr4 57699729 57700043 -126588619 + AluSx SINE Alu 1 312 0 21 36 0 0 chr4 57700334 57700362 -126588300 + AT_rich Low_complexity Low_complexity 1 28 0 1794 156 14 0 chr4 57700441 57700717 -126587945 + AluSx SINE Alu 1 280 -32 274 211 28 0 chr4 57700941 57701012 -126587650 + L1M LINE L1 5356 5428 -872 21 57 0 0 chr4 57702211 57702246 -126586416 + AT_rich Low_complexity Low_complexity 1 35 0 483 287 45 67 chr4 57702759 57702982 -126585680 + MIR SINE MIR 19 236 -26 293 271 136 21 chr4 57703470 57703610 -126585052 + MIR SINE MIR 19 174 -88 182 295 26 39 chr4 57703604 57703682 -126584980 + MER5A DNA MER1_type 113 189 0 * 333 0 0 0 chr4 57703852 57703889 -126584773 + (TG)n Simple_repeat Simple_repeat 2 38 0 382 320 61 48 chr4 57704364 57704592 -126584070 - MIR SINE MIR -18 244 14 442 253 25 19 chr4 57704632 57704794 -126583868 - LTR67 LTR ERVL -19 538 376 502 283 21 7 chr4 57704986 57705131 -126583531 - MIR SINE MIR -52 210 64 739 346 100 34 chr4 57705392 57706135 -126582527 - ERVL LTR ERVL -2361 3403 2612 2046 133 14 0 chr4 57706188 57706482 -126582180 + AluSx SINE Alu 1 298 -14 22 80 0 0 chr4 57707340 57707390 -126581272 + AT_rich Low_complexity Low_complexity 1 50 0 349 274 89 36 chr4 57707602 57707770 -126580892 - MIR SINE MIR 0 262 86 189 309 0 36 chr4 57710670 57710725 -126577937 + L2 LINE L2 3193 3245 -27 208 324 14 14 chr4 57711363 57711437 -126577225 + L2 LINE L2 3240 3313 0 1730 105 54 79 chr4 57711948 57712263 -126576399 + AluSx SINE Alu 1 307 -5 955 186 6 0 chr4 57713300 57713472 -126575190 + MER2 DNA MER2_type 1 173 -172 29 0 0 0 chr4 57714606 57714635 -126574027 + AT_rich Low_complexity Low_complexity 1 29 0 1938 136 0 0 chr4 57714798 57715078 -126573584 + AluJb SINE Alu 1 280 -32 183 42 0 0 chr4 57715078 57715102 -126573560 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 216 97 0 0 chr4 57715109 57715140 -126573522 + (GGGTG)n Simple_repeat Simple_repeat 3 33 0 454 327 51 0 chr4 57715925 57716082 -126572580 - MIR3 SINE MIR -29 179 14 617 218 8 8 chr4 57716195 57716328 -126572334 - FLAM_A SINE Alu 0 133 1 1674 161 51 0 chr4 57717103 57717377 -126571285 - AluJb SINE Alu -24 288 1 653 268 125 36 chr4 57717811 57718035 -126570627 + MIR SINE MIR 3 246 -16 192 97 0 0 chr4 57718039 57718070 -126570592 + (CAT)n Simple_repeat Simple_repeat 2 32 0 280 336 82 0 chr4 57718113 57718223 -126570439 - L2 LINE L2 -5 3267 3149 467 60 0 0 chr4 57719066 57719133 -126569529 - L1PA4 LINE L1 0 6155 6089 335 335 110 12 chr4 57720312 57720557 -126568105 + L2 LINE L2 526 794 -2520 268 304 264 8 chr4 57720830 57720955 -126567707 + MER91A DNA MER1_type 14 170 -26 816 328 58 39 chr4 57721082 57721183 -126567479 + L2 LINE L2 1962 2060 -1254 397 35 35 0 chr4 57721183 57721240 -126567422 - L1PA4 LINE L1 0 6155 6097 816 328 58 39 chr4 57721240 57721757 -126566905 + L2 LINE L2 2060 2592 -722 219 334 38 14 chr4 57721847 57721884 -126566778 + L2 LINE L2 2819 2854 -459 2319 95 7 0 chr4 57721884 57722179 -126566483 - AluSx SINE Alu -15 297 1 219 334 38 14 chr4 57722179 57722283 -126566379 + L2 LINE L2 2854 2965 -348 2574 176 33 50 chr4 57722971 57723493 -126565169 + MLT2B2 LTR ERVL 1 513 -2 566 305 20 0 chr4 57725107 57725258 -126563404 - MIR SINE MIR -51 211 58 355 252 221 0 chr4 57726833 57726960 -126561702 + MER103 DNA DNA 3 157 -9 225 65 0 0 chr4 57727155 57727186 -126561476 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 220 286 12 24 chr4 57727257 57727304 -126561358 + (TA)n Simple_repeat Simple_repeat 2 49 -35 1922 129 70 20 chr4 57727304 57727661 -126561001 + THE1C LTR MaLR 1 375 0 220 286 12 24 chr4 57727661 57727697 -126560965 + (TA)n Simple_repeat Simple_repeat 49 84 0 498 219 0 9 chr4 57728419 57728524 -126560138 + U13 snRNA snRNA 1 104 0 230 227 0 0 chr4 57730738 57730782 -126557880 + LTR67 LTR ERVL 95 138 -419 * 233 281 0 0 chr4 57730762 57730826 -126557836 + MLT1J1 LTR MaLR 76 139 -307 674 263 40 49 chr4 57730988 57731235 -126557427 + MLT1L LTR MaLR 363 607 -8 26 0 0 0 chr4 57732324 57732350 -126556312 + AT_rich Low_complexity Low_complexity 1 26 0 615 342 66 39 chr4 57733319 57733827 -126554835 - L2 LINE L2 -8 3305 2764 2211 115 0 3 chr4 57733827 57734139 -126554523 - AluSx SINE Alu -1 311 1 615 342 66 39 chr4 57734139 57734333 -126554329 - L2 LINE L2 -549 2764 2577 476 288 135 36 chr4 57737086 57737419 -126551243 - L1MC4a LINE L1 -1879 5929 5564 2668 144 16 70 chr4 57737849 57738403 -126550259 + L1MA9 LINE L1 5558 6081 -231 415 178 25 34 chr4 57738403 57738514 -126550148 + L1MA7 LINE L1 6167 6283 -8 1923 132 68 60 chr4 57738844 57738982 -126549680 - L1MA6 LINE L1 -35 6265 6130 2060 128 0 0 chr4 57738982 57739293 -126549369 - AluSx SINE Alu 0 311 1 1923 132 68 60 chr4 57739293 57739533 -126549129 - L1MA6 LINE L1 -170 6130 5883 2147 162 57 33 chr4 57739599 57740019 -126548643 + MSTB1 LTR MaLR 3 432 0 571 339 87 37 chr4 57740443 57740765 -126547897 - L2 LINE L2 0 3272 2935 469 28 113 7 chr4 57741542 57741684 -126546978 + (TA)n Simple_repeat Simple_repeat 2 158 0 38 22 0 0 chr4 57741697 57741742 -126546920 + AT_rich Low_complexity Low_complexity 1 45 0 280 303 82 12 chr4 57742815 57742977 -126545685 + MIR SINE MIR 6 176 -62 2056 108 42 66 chr4 57742980 57743312 -126545350 + THE1C LTR MaLR 4 327 -48 2251 113 48 17 chr4 57743312 57743665 -126544997 + THE1B LTR MaLR 1 364 0 2056 108 42 66 chr4 57743665 57743713 -126544949 + THE1C LTR MaLR 327 375 0 259 156 266 0 chr4 57743713 57743777 -126544885 + MIR SINE MIR 171 251 -11 283 283 144 29 chr4 57744022 57744230 -126544432 - MIR SINE MIR -6 256 17 282 200 46 0 chr4 57745768 57745833 -126542829 - L2 LINE L2 0 3272 3205 509 311 65 31 chr4 57746275 57746600 -126542062 + MER102b DNA MER1_type 2 337 -4 353 283 71 18 chr4 57747227 57747340 -126541322 + MIR3 SINE MIR 81 199 -9 11721 115 18 60 chr4 57747506 57749227 -126539435 + L1PA7 LINE L1 6 1658 -4803 3024 53 0 0 chr4 57749227 57749605 -126539057 + L1PA5 LINE L1 5770 6147 -7 11721 115 18 60 chr4 57749605 57750400 -126538262 + L1PA7 LINE L1 1658 2485 -3976 15976 91 2 2 chr4 57750400 57753448 -126535214 + L1PA7 LINE L1 3409 6465 -4 658 108 0 0 chr4 57753449 57753542 -126535120 + L1PB2 LINE L1 5777 5869 -282 296 66 53 5 chr4 57753542 57753599 -126535063 - AluSc SINE Alu 0 299 247 724 87 0 0 chr4 57753599 57753703 -126534959 + L1PB2 LINE L1 5870 5973 -178 755 105 0 32 chr4 57753703 57753827 -126534835 + AluSq/x SINE Alu 1 120 -193 580 237 13 19 chr4 57754238 57754394 -126534268 + AluSg/x SINE Alu 138 292 -18 327 140 0 0 chr4 57754394 57754451 -126534211 + L1PB1 LINE L1 5961 6017 -134 21 0 0 0 chr4 57754451 57754472 -126534190 + AT_rich Low_complexity Low_complexity 1 21 0 433 328 70 0 chr4 57755098 57755226 -126533436 + L2 LINE L2 3136 3272 0 368 287 70 0 chr4 57756160 57756275 -126532387 - MIR3 SINE MIR -21 187 65 1070 268 32 56 chr4 57756793 57757203 -126531459 - MLT1J1 LTR MaLR -9 437 38 21 0 0 0 chr4 57757421 57757442 -126531220 + AT_rich Low_complexity Low_complexity 1 21 0 286 234 241 51 chr4 57757672 57757830 -126530832 - MIR SINE MIR -72 190 3 207 69 0 0 chr4 57758610 57758639 -126530023 + (CA)n Simple_repeat Simple_repeat 2 30 0 1164 198 20 108 chr4 57759553 57759953 -126528709 + MLT1A1 LTR MaLR 1 365 0 815 258 19 52 chr4 57760588 57760802 -126527860 - MLT1F1 LTR MaLR 0 567 348 225 0 0 0 chr4 57760802 57760827 -126527835 + (CTCA)n Simple_repeat Simple_repeat 4 28 0 815 258 19 52 chr4 57760827 57761106 -126527556 - MLT1F1 LTR MaLR -219 348 1 205 409 34 7 chr4 57761215 57761364 -126527298 - L2 LINE L2 -228 3044 2892 359 349 110 18 chr4 57761465 57761683 -126526979 + MIR SINE MIR 6 243 -19 6207 109 0 0 chr4 57761998 57762774 -126525888 - L1PA10 LINE L1 -1 6167 5401 2542 110 3 3 chr4 57762774 57763129 -126525533 + THE1A LTR MaLR 1 355 0 6207 109 0 0 chr4 57763129 57763474 -126525188 - L1PA10 LINE L1 -766 5402 5058 5602 141 1 6 chr4 57763488 57764400 -126524262 - L1PA10 LINE L1 -1266 4880 3973 2337 116 8 8 chr4 57764784 57765138 -126523524 + THE1A LTR MaLR 1 354 -1 230 293 61 0 chr4 57765649 57765731 -126522931 + MLT1J1 LTR MaLR 1 87 -359 765 168 65 0 chr4 57765754 57765909 -126522753 - L1MA10 LINE L1 -7 6327 6163 264 227 15 0 chr4 57765927 57765993 -126522669 - L1MB1 LINE L1 -4 6185 6119 * 1618 217 35 3 chr4 57765988 57766356 -126522306 + L1MB1 LINE L1 5742 6121 -68 1536 226 107 34 chr4 57766417 57766855 -126521807 - MLT2B1 LTR ERVL -48 472 3 1838 262 32 47 chr4 57766868 57767490 -126521172 + L1MA8 LINE L1 466 1078 -6411 12204 205 34 28 chr4 57767516 57770806 -126517856 + L1MA8 LINE L1 2012 5280 -2285 2076 122 14 3 chr4 57770806 57771100 -126517562 + AluSx SINE Alu 1 297 -15 12204 205 34 28 chr4 57771100 57771729 -126516933 + L1MA8 LINE L1 5280 5957 -1608 1906 110 14 3 chr4 57771729 57772019 -126516643 + L1MA3 LINE L1 6010 6302 -3 12204 205 34 28 chr4 57772019 57772341 -126516321 + L1MA8 LINE L1 5957 6276 -1289 3115 156 21 21 chr4 57772344 57772927 -126515735 + L1MA8 LINE L1 7128 7710 0 429 219 0 0 chr4 57773718 57773800 -126514862 - L2 LINE L2 -5 3308 3227 282 316 98 33 chr4 57774039 57774254 -126514408 + MIR SINE MIR 20 248 -14 503 299 32 0 chr4 57775840 57775994 -126512668 + MIR SINE MIR 15 173 -89 303 286 60 23 chr4 57776644 57776777 -126511885 + L2 LINE L2 3172 3309 -4 787 255 17 51 chr4 57777115 57777350 -126511312 + MIR SINE MIR 1 227 -35 500 292 15 41 chr4 57778699 57778894 -126509768 + MIR3 SINE MIR 16 205 -3 2065 116 27 0 chr4 57779746 57780038 -126508624 + AluSq SINE Alu 1 300 -13 2104 253 26 5 chr4 57780908 57780956 -126507706 - L1M4 LINE L1 -793 5353 5307 2157 115 0 3 chr4 57780956 57781261 -126507401 - AluSc SINE Alu -5 304 1 2104 253 26 5 chr4 57781261 57781785 -126506877 - L1M4 LINE L1 -839 5307 4769 3033 231 44 9 chr4 57781801 57781935 -126506727 + L1ME1 LINE L1 5350 5478 -856 2093 110 3 10 chr4 57781935 57782236 -126506426 + AluY SINE Alu 1 299 -12 3033 231 44 9 chr4 57782236 57782901 -126505761 + L1ME1 LINE L1 5478 6332 -2 2047 135 0 0 chr4 57783681 57783992 -126504670 - AluSg SINE Alu 0 311 1 275 330 45 48 chr4 57784060 57784351 -126504311 + L2 LINE L2 2822 3111 -161 454 364 23 6 chr4 57786392 57786565 -126502097 + MIR3 SINE MIR 30 205 -3 25 0 0 0 chr4 57788090 57788115 -126500547 + AT_rich Low_complexity Low_complexity 1 25 0 211 367 124 18 chr4 57788980 57789149 -126499513 + MIR SINE MIR 32 218 -44 249 158 0 0 chr4 57790191 57790229 -126498433 + MER91 DNA MER1_type 2 39 -151 718 237 87 6 chr4 57790387 57790560 -126498102 + MIR SINE MIR 44 230 -32 341 232 32 42 chr4 57790769 57790864 -126497798 - MIR SINE MIR -18 244 151 2018 129 7 7 chr4 57791598 57791892 -126496770 + AluSg SINE Alu 1 294 -16 1326 78 0 0 chr4 57791892 57791926 -126496736 + (GAAA)n Simple_repeat Simple_repeat 1 214 0 1326 78 0 0 chr4 57791926 57792106 -126496556 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2084 106 0 20 chr4 57792128 57792465 -126496197 + AluSq SINE Alu 1 331 0 251 306 245 5 chr4 57792836 57793032 -126495630 + MIR SINE MIR 20 262 0 380 326 117 0 chr4 57793128 57793358 -126495304 - L2 LINE L2 -9 3304 3048 247 309 62 0 chr4 57793342 57793439 -126495223 - L2 LINE L2 -568 2746 2644 * 202 250 0 0 chr4 57793978 57794022 -126494640 + (TA)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr4 57794026 57794047 -126494615 + AT_rich Low_complexity Low_complexity 1 21 0 405 0 0 0 chr4 57794318 57794363 -126494299 + (CA)n Simple_repeat Simple_repeat 2 46 0 978 228 77 20 chr4 57794522 57794768 -126493894 - MIR SINE MIR -1 261 2 1047 209 25 63 chr4 57795037 57795419 -126493243 + MLT2B1 LTR ERVL 1 512 -3 209 182 18 0 chr4 57795435 57795490 -126493172 + (CAT)n Simple_repeat Simple_repeat 3 58 0 238 292 34 34 chr4 57795564 57795653 -126493009 - MIR SINE MIR -63 145 57 436 315 102 28 chr4 57797368 57797584 -126491078 - L3 LINE CR1 -36 1541 1310 983 179 38 31 chr4 57797827 57798131 -126490531 - THE1C LTR MaLR 0 364 1 10905 104 57 9 chr4 57798131 57799639 -126489023 - THE1C-int LTR MaLR 0 1580 1 2235 132 26 34 chr4 57799639 57800017 -126488645 - THE1C LTR MaLR 0 375 1 183 289 0 0 chr4 57800027 57800072 -126488590 - L3 LINE CR1 -361 1216 1172 396 299 54 18 chr4 57800261 57800428 -126488234 - MIR3 SINE MIR -15 193 21 351 272 0 12 chr4 57800700 57800781 -126487881 + L2 LINE L2 3183 3262 -10 208 259 0 19 chr4 57801076 57801130 -126487532 + GA-rich Low_complexity Low_complexity 1 53 0 23 68 0 0 chr4 57801536 57801580 -126487082 + AT_rich Low_complexity Low_complexity 1 44 0 25 0 0 0 chr4 57801870 57801895 -126486767 + AT_rich Low_complexity Low_complexity 1 25 0 739 247 17 11 chr4 57802205 57802383 -126486279 - MLT1C LTR MaLR 0 467 289 349 163 151 12 chr4 57802393 57802479 -126486183 - MLT1C LTR MaLR -361 106 9 326 243 75 65 chr4 57802714 57802821 -126485841 - L2 LINE L2 -3 3310 3203 221 349 0 0 chr4 57802872 57802935 -126485727 + L2 LINE L2 3246 3308 -5 188 318 0 0 chr4 57803094 57803138 -126485524 + L3 LINE CR1 1515 1558 -19 928 229 23 23 chr4 57803330 57803548 -126485114 + MLT1J1 LTR MaLR 7 224 -222 762 201 7 7 chr4 57803567 57803716 -126484946 + MER106B DNA MER1_type 1 149 -910 195 85 64 0 chr4 57803738 57803785 -126484877 + (TTTAA)n Simple_repeat Simple_repeat 3 52 0 395 284 0 0 chr4 57803832 57803913 -126484749 + MLT1J1 LTR MaLR 238 318 -128 335 317 83 14 chr4 57804025 57804170 -126484492 - MIR SINE MIR -106 156 2 378 312 57 21 chr4 57805979 57806120 -126482542 + MER5A DNA MER1_type 1 146 -43 515 200 16 26 chr4 57806997 57807137 -126481525 + MLT1I LTR MaLR 315 409 0 1001 258 109 28 chr4 57808763 57809373 -126479289 - L2 LINE L2 -22 3291 2627 1145 271 144 21 chr4 57809965 57810499 -126478163 - L2 LINE L2 -969 2345 1746 1151 270 71 19 chr4 57810504 57810915 -126477747 - LTR16B LTR ERVL 0 464 33 895 333 61 11 chr4 57810947 57811406 -126477256 - L2 LINE L2 -1575 1739 1258 421 205 13 0 chr4 57811921 57811999 -126476663 + MER5B DNA MER1_type 100 178 0 189 318 60 60 chr4 57813072 57813223 -126475439 + L3b LINE CR1 1291 1441 -142 28 48 0 0 chr4 57813357 57813399 -126475263 + AT_rich Low_complexity Low_complexity 1 42 0 2100 131 73 25 chr4 57814339 57814697 -126473965 + THE1C LTR MaLR 1 375 0 200 211 88 35 chr4 57817125 57817182 -126471480 - MIR3 SINE MIR -6 202 143 1197 280 93 18 chr4 57817247 57817974 -126470688 + L2 LINE L2 2481 3252 -61 338 215 0 31 chr4 57818491 57818556 -126470106 + MER2 DNA MER2_type 283 345 0 551 216 0 0 chr4 57818556 57818653 -126470009 - MER2 DNA MER2_type -247 98 2 277 250 0 0 chr4 57818659 57818711 -126469951 + MIR SINE MIR 15 66 -196 1311 230 138 36 chr4 57818725 57819146 -126469516 + MLT2B1 LTR ERVL 1 464 -56 404 185 22 0 chr4 57819146 57819238 -126469424 + CT-rich Low_complexity Low_complexity 2 95 0 2126 85 4 0 chr4 57819508 57819778 -126468884 - AluSc SINE Alu -11 298 28 2104 145 81 16 chr4 57820041 57820413 -126468249 + MSTD LTR MaLR 1 396 0 228 206 29 29 chr4 57820564 57820632 -126468030 + GA-rich Low_complexity Low_complexity 2 69 0 339 304 94 14 chr4 57821434 57821572 -126467090 - L2 LINE L2 -8 3264 3116 3380 276 164 26 chr4 57821653 57824046 -126464616 + L2 LINE L2 524 3308 -5 339 273 77 113 chr4 57824232 57824311 -126464351 + L2 LINE L2 3014 3094 -219 2172 122 23 0 chr4 57824311 57824614 -126464048 - AluSg SINE Alu 0 310 1 339 273 77 113 chr4 57824614 57824845 -126463817 + L2 LINE L2 3094 3313 0 291 367 41 12 chr4 57824866 57825035 -126463627 + L2 LINE L2 2693 2866 -448 203 333 10 71 chr4 57825075 57825174 -126463488 + L2 LINE L2 2948 3040 -232 1817 178 58 51 chr4 57825249 57825642 -126463020 - MSTD LTR MaLR 0 396 1 200 264 19 0 chr4 57825761 57825814 -126462848 + (TTA)n Simple_repeat Simple_repeat 3 56 0 218 274 78 49 chr4 57826048 57826150 -126462512 - L2 LINE L2 -2 3311 3207 384 290 49 62 chr4 57826387 57826549 -126462113 + MIR3 SINE MIR 49 208 0 340 238 48 29 chr4 57827388 57827493 -126461169 - L2 LINE L2 0 3313 3207 259 236 14 0 chr4 57828115 57828187 -126460475 + (TAG)n Simple_repeat Simple_repeat 1 73 0 4007 150 7 17 chr4 57828197 57828915 -126459747 - MER50 LTR ERV1 -23 711 1 405 298 0 14 chr4 57828916 57829057 -126459605 + (TAG)n Simple_repeat Simple_repeat 1 139 0 323 264 188 0 chr4 57829092 57829236 -126459426 + MIR SINE MIR 92 262 0 216 188 62 0 chr4 57830524 57830572 -126458090 - MIR SINE MIR -5 257 207 770 223 49 5 chr4 57830578 57830762 -126457900 - MIR SINE MIR 0 262 71 197 293 227 13 chr4 57831065 57831140 -126457522 + MIR SINE MIR 21 111 -97 6313 32 0 0 chr4 57831288 57832029 -126456633 - L1PA3 LINE L1 -3 6152 5412 39944 49 2 1 chr4 57832129 57837318 -126451344 - L1PA3 LINE L1 -944 5202 8 363 270 143 0 chr4 57838274 57838400 -126450262 + MIR SINE MIR 109 252 -10 2394 168 40 10 chr4 57839240 57839735 -126448927 - L1MA9 LINE L1 -5 6307 5798 4222 132 57 0 chr4 57839735 57840414 -126448248 - L1PA16 LINE L1 -11 6155 5436 1037 113 83 0 chr4 57840425 57840593 -126448069 - L1MA9 LINE L1 -471 5820 5639 5894 88 0 0 chr4 57840725 57841095 -126447567 - L1PB1 LINE L1 0 6151 5782 252 86 0 0 chr4 57841095 57841130 -126447532 + (CA)n Simple_repeat Simple_repeat 2 36 0 5894 88 0 0 chr4 57841130 57841749 -126446913 - L1PB1 LINE L1 -368 5783 5203 243 289 81 53 chr4 57842082 57842328 -126446334 + MLT1I LTR MaLR 54 306 -103 306 361 101 0 chr4 57842365 57842484 -126446178 + L2 LINE L2 3142 3272 0 432 0 0 0 chr4 57844642 57844690 -126443972 + (TA)n Simple_repeat Simple_repeat 1 48 0 196 130 43 0 chr4 57844731 57844777 -126443885 + (TA)n Simple_repeat Simple_repeat 1 48 0 212 245 0 0 chr4 57844777 57844826 -126443836 + GA-rich Low_complexity Low_complexity 1 49 0 1188 229 98 45 chr4 57844830 57845271 -126443391 - MLT2B1 LTR ERVL -56 464 1 731 228 155 15 chr4 57845463 57845669 -126442993 - MIR SINE MIR 0 262 28 284 271 127 75 chr4 57845971 57846333 -126442329 + L2 LINE L2 2584 2964 -350 1777 146 162 0 chr4 57846572 57846893 -126441769 + MER83C LTR ERV1 1 373 0 2462 246 64 18 chr4 57846942 57847648 -126441014 + MER21B LTR ERV1 1 738 -125 245 335 92 71 chr4 57847755 57848011 -126440651 - L2 LINE L2 -357 2957 2708 640 280 6 6 chr4 57848011 57848186 -126440476 - MER5B DNA MER1_type 0 178 4 245 335 92 71 chr4 57848186 57848517 -126440145 - L2 LINE L2 -606 2708 2358 476 224 65 0 chr4 57849764 57849871 -126438791 + MIR SINE MIR 48 161 -101 693 281 61 45 chr4 57849958 57850204 -126438458 + MIR SINE MIR 2 251 -11 238 199 26 0 chr4 57850349 57850417 -126438245 + MIR SINE MIR 101 168 -58 554 138 18 18 chr4 57851046 57851155 -126437507 - MER53 DNA DNA -80 109 1 655 231 157 95 chr4 57851426 57852075 -126436587 - MER21B LTR ERV1 -154 709 22 1426 205 43 12 chr4 57852398 57852563 -126436099 + MER58B DNA MER1_type 5 163 -2257 2156 160 6 3 chr4 57852563 57852925 -126435737 + MLT1A1 LTR MaLR 3 365 0 1426 205 43 12 chr4 57852925 57853086 -126435576 + MER58B DNA MER1_type 163 341 0 333 224 231 28 chr4 57853164 57853307 -126435355 - MIR SINE MIR -14 248 77 423 296 94 54 chr4 57855492 57855715 -126432947 - MIR SINE MIR -30 232 1 424 317 52 14 chr4 57855863 57856137 -126432525 - L1ME LINE L1 -641 5480 5191 1987 124 78 32 chr4 57856433 57856781 -126431881 - THE1B LTR MaLR 0 364 1 279 0 0 0 chr4 57856917 57856948 -126431714 + (TA)n Simple_repeat Simple_repeat 2 32 0 24 0 0 0 chr4 57858253 57858277 -126430385 + AT_rich Low_complexity Low_complexity 1 24 0 1467 214 23 46 chr4 57858673 57858714 -126429948 + MLT1B LTR MaLR 7 47 -343 1854 182 72 11 chr4 57858714 57859087 -126429575 + MSTD LTR MaLR 1 396 0 1467 214 23 46 chr4 57859087 57859433 -126429229 + MLT1B LTR MaLR 47 385 -5 1038 181 0 21 chr4 57859598 57859791 -126428871 + MER5A DNA MER1_type 1 189 0 254 368 49 2 chr4 57860066 57860260 -126428402 - MIR SINE MIR -40 222 21 3389 108 14 8 chr4 57860362 57860870 -126427792 - MER9 LTR ERVK 0 511 1 2969 258 77 63 chr4 57861623 57862862 -126425800 + L2 LINE L2 1514 2769 -545 1159 159 0 54 chr4 57862862 57863101 -126425561 - Tigger2a DNA MER2_type -208 226 1 191 262 56 75 chr4 57863805 57863912 -126424750 + L2 LINE L2 2866 2970 -302 385 276 103 0 chr4 57864662 57864778 -126423884 + MIR SINE MIR 64 191 -71 822 252 65 55 chr4 57864864 57865154 -126423508 + L2 LINE L2 3020 3312 -1 287 271 229 8 chr4 57867641 57867759 -126420903 - MIR3 SINE MIR -52 156 13 554 295 92 32 chr4 57869416 57869762 -126418900 + L1PA12 LINE L1 1527 1893 -5688 1376 277 32 29 chr4 57869950 57870506 -126418156 + L1PA15 LINE L1 1538 2095 -5486 1143 153 91 0 chr4 57870503 57870745 -126417917 + L1PA15 LINE L1 3374 3637 -3947 * 10737 187 13 5 chr4 57870750 57874268 -126414394 + L1PA15 LINE L1 4050 7603 0 696 128 17 0 chr4 57874858 57874975 -126413687 - MSTC LTR MaLR -1 427 309 689 122 37 0 chr4 57874964 57875071 -126413591 - MSTC LTR MaLR -317 111 1 * 304 343 105 21 chr4 57875979 57876122 -126412540 - L2 LINE L2 -2 3270 3116 228 270 135 61 chr4 57876549 57876697 -126411965 - MIR3 SINE MIR -22 186 28 333 253 56 22 chr4 57876804 57876987 -126411675 - MLT1I LTR MaLR -8 424 249 243 0 0 0 chr4 57877034 57877061 -126411601 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2302 90 0 0 chr4 57877064 57877353 -126411309 - AluSp SINE Alu -24 289 1 3423 64 9 0 chr4 57877355 57877795 -126410867 - L1PA7 LINE L1 -1 6153 5710 256 210 16 16 chr4 57877841 57877903 -126410759 - MLT1J2 LTR MaLR -322 128 67 22 56 0 0 chr4 57878273 57878309 -126410353 + AT_rich Low_complexity Low_complexity 1 36 0 542 264 64 19 chr4 57878761 57879026 -126409636 + L1ME LINE L1 5541 5817 -304 290 253 58 39 chr4 57879045 57879199 -126409463 + L1ME4a LINE L1 5580 5736 -385 21 82 0 0 chr4 57879285 57879334 -126409328 + AT_rich Low_complexity Low_complexity 1 49 0 333 270 135 77 chr4 57879514 57879773 -126408889 + L1ME4a LINE L1 5838 6111 -10 2043 230 53 33 chr4 57880012 57880582 -126408080 + MLT1G LTR MaLR 1 581 -9 1414 171 108 11 chr4 57880736 57881005 -126407657 + AluJb SINE Alu 1 295 -17 635 217 32 19 chr4 57881215 57881372 -126407290 - MIR SINE MIR -101 161 3 465 175 0 32 chr4 57881695 57881821 -126406841 + GA-rich Low_complexity Low_complexity 3 124 0 * 1461 56 3 3 chr4 57881808 57882167 -126406495 + (GGAAA)n Simple_repeat Simple_repeat 1 360 0 248 221 0 15 chr4 57882156 57882224 -126406438 + GA-rich Low_complexity Low_complexity 4 70 0 * 228 317 0 0 chr4 57882965 57883025 -126405637 - L2 LINE L2 -9 3304 3245 403 295 37 42 chr4 57883579 57883769 -126404893 - MLT1K LTR MaLR -29 559 371 328 315 9 18 chr4 57883853 57883964 -126404698 - MLT1K LTR MaLR -457 131 22 264 122 0 0 chr4 57885278 57885319 -126403343 + MLT1A1 LTR MaLR 1 41 -324 240 211 18 0 chr4 57885700 57885757 -126402905 + MLT1I LTR MaLR 71 128 -281 1609 215 86 25 chr4 57885969 57886444 -126402218 - MLT1D LTR MaLR 0 505 2 227 250 83 23 chr4 57887749 57887881 -126400781 + L1MEd LINE L1 58 197 -5922 256 349 134 0 chr4 57888698 57888847 -126399815 + MIR3 SINE MIR 34 202 -6 865 213 38 38 chr4 57889879 57890199 -126398463 - L1MC5 LINE L1 -32 7929 7610 514 365 24 0 chr4 57890702 57890910 -126397752 + MIR SINE MIR 11 223 -39 325 212 15 0 chr4 57890920 57890986 -126397676 + MER81 DNA DNA 48 114 0 268 323 98 23 chr4 57891218 57891351 -126397311 + MER5B DNA MER1_type 7 149 -29 261 0 0 0 chr4 57891521 57891550 -126397112 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 180 301 21 43 chr4 57891768 57891861 -126396801 - MIR SINE MIR -94 114 24 270 0 0 0 chr4 57892333 57892363 -126396299 + (TTTTA)n Simple_repeat Simple_repeat 4 33 0 2233 101 12 0 chr4 57892363 57892691 -126395971 - L1PA10 LINE L1 -20 6148 5817 2220 95 3 3 chr4 57893081 57893397 -126395265 - AluSp SINE Alu 0 316 1 217 370 73 85 chr4 57894468 57894809 -126393853 - L2 LINE L2 -98 3174 2838 429 20 0 0 chr4 57894943 57894993 -126393669 + (T)n Simple_repeat Simple_repeat 1 50 0 307 320 25 25 chr4 57896641 57896763 -126391899 - MIR3 SINE MIR -1 207 86 228 171 0 0 chr4 57896851 57896892 -126391770 - L2 LINE L2 0 3313 3273 476 238 127 37 chr4 57897013 57897312 -126391350 - L1ME4a LINE L1 -13 6108 5783 345 146 58 97 chr4 57897781 57897815 -126390847 - MER53 DNA DNA -88 101 67 1171 172 57 115 chr4 57897815 57898198 -126390464 + MLT1A1 LTR MaLR 1 361 -4 345 146 58 97 chr4 57898198 57898266 -126390396 - MER53 DNA DNA -122 67 3 2093 112 7 0 chr4 57898505 57898791 -126389871 - AluSc SINE Alu -8 301 14 483 281 137 46 chr4 57898991 57899452 -126389210 - L2 LINE L2 -188 3084 2596 21 57 0 0 chr4 57899453 57899488 -126389174 + AT_rich Low_complexity Low_complexity 1 35 0 527 304 167 34 chr4 57899494 57899931 -126388731 - MLT1K LTR MaLR -93 495 1 231 355 94 7 chr4 57901150 57901288 -126387374 + MIR SINE MIR 42 191 -71 578 214 26 22 chr4 57902100 57902282 -126386380 - L1ME3A LINE L1 -214 5950 5771 324 209 209 37 chr4 57902342 57902533 -126386129 - MER112 DNA MER1_type -2 258 35 350 270 26 43 chr4 57902624 57902739 -126385923 - MER5A DNA MER1_type -71 118 6 487 273 122 20 chr4 57902763 57903131 -126385531 - L1ME3A LINE L1 -536 5626 5219 796 220 54 6 chr4 57903480 57903648 -126385014 + MER45A DNA AcHobo 3 178 0 2108 126 7 0 chr4 57903898 57904183 -126384479 - AluSx SINE Alu -13 299 13 382 298 23 46 chr4 57904383 57904514 -126384148 + MIR SINE MIR 18 145 -117 553 290 99 0 chr4 57904710 57904872 -126383790 + MIR SINE MIR 12 189 -73 362 370 80 18 chr4 57904972 57905431 -126383231 + L2 LINE L2 2606 3094 -178 642 289 36 21 chr4 57905456 57905604 -126383058 + MIR SINE MIR 1 154 -108 2322 110 0 0 chr4 57905604 57905913 -126382749 + AluSg SINE Alu 1 309 -1 642 289 36 21 chr4 57905913 57905958 -126382704 + MIR SINE MIR 154 197 -65 1976 134 168 21 chr4 57906094 57906482 -126382180 - LTR47A LTR ERVL -7 445 1 274 295 53 32 chr4 57906482 57906577 -126382085 + L2 LINE L2 3136 3232 -40 2142 113 3 0 chr4 57906612 57906929 -126381733 - AluSx SINE Alu 0 318 1 300 319 123 33 chr4 57906996 57907272 -126381390 + MLT1J2 LTR MaLR 103 403 -47 524 355 63 57 chr4 57908386 57908925 -126379737 - L2 LINE L2 0 3272 2725 2202 116 77 13 chr4 57909200 57909654 -126379008 + MER1A DNA MER1_type 1 529 0 2105 130 0 3 chr4 57910421 57910720 -126377942 + AluY SINE Alu 5 302 -9 277 181 0 28 chr4 57911573 57911645 -126377017 + (CATA)n Simple_repeat Simple_repeat 3 72 0 369 336 98 0 chr4 57912903 57913046 -126375616 - L2 LINE L2 0 3272 3116 255 278 28 14 chr4 57913141 57913213 -126375449 + L2 LINE L2 3200 3272 0 329 188 12 0 chr4 57913213 57913293 -126375369 + (TGGA)n Simple_repeat Simple_repeat 2 82 0 436 269 0 85 chr4 57913674 57913886 -126374776 + L2 LINE L2 3119 3312 -1 1743 170 121 18 chr4 57914260 57914648 -126374014 - MSTA LTR MaLR 0 428 1 1846 120 70 33 chr4 57915179 57915479 -126373183 + AluSx SINE Alu 1 311 -1 686 288 80 9 chr4 57915671 57915883 -126372779 - MIR SINE MIR -25 237 11 3523 137 30 47 chr4 57916050 57916694 -126371968 + L1PA16 LINE L1 5520 6152 -14 2075 111 31 10 chr4 57916714 57917003 -126371659 + AluSq SINE Alu 1 295 -18 915 193 63 1 chr4 57917149 57917405 -126371257 - L1MA6 LINE L1 0 6297 6000 17509 84 2 11 chr4 57917671 57919871 -126368791 + L1P LINE L1 1 2178 -3968 2491 74 0 0 chr4 57919871 57920169 -126368493 + AluY SINE Alu 1 298 -13 17509 84 2 11 chr4 57920169 57920485 -126368177 + L1P LINE L1 2178 2495 -3651 6668 132 110 92 chr4 57920487 57922153 -126366509 + pTR5 LTR ERV1 743 2437 -1 20673 46 7 2 chr4 57922160 57925800 -126362862 + L1PA5 LINE L1 2497 6154 0 481 266 119 24 chr4 57925800 57926079 -126362583 + MLT1H1 LTR MaLR 261 555 0 248 230 103 35 chr4 57929850 57929937 -126358725 + MLT1B LTR MaLR 81 173 -201 983 194 15 10 chr4 57929989 57930185 -126358477 + MLT1B LTR MaLR 194 390 0 311 231 10 7 chr4 57930241 57930322 -126358340 - L1MC4 LINE L1 -205 7668 7522 412 206 13 97 chr4 57930351 57930506 -126358156 - MER104 DNA Tc2 -35 145 4 528 324 49 59 chr4 57930532 57930856 -126357806 + L3b LINE CR1 1132 1452 -131 2617 118 18 20 chr4 57931385 57931776 -126356886 - MLT1B LTR MaLR 0 390 1 428 247 159 33 chr4 57933636 57933759 -126354903 - L2 LINE L2 -8 3305 3150 2358 103 0 0 chr4 57933759 57934069 -126354593 + AluSg SINE Alu 1 310 0 428 247 159 33 chr4 57934069 57934127 -126354535 - L2 LINE L2 -163 3150 3101 253 197 14 42 chr4 57934174 57934245 -126354417 - L2 LINE L2 -536 2778 2710 313 259 46 19 chr4 57934408 57934516 -126354146 + L1MD3 LINE L1 7877 7987 -8 196 128 21 43 chr4 57935396 57935415 -126353247 - L2 LINE L2 0 3313 3268 219 36 0 0 chr4 57935415 57935443 -126353219 - MIR SINE MIR -12 250 223 296 246 31 0 chr4 57935488 57935553 -126353109 - MIR SINE MIR -148 114 48 254 239 0 0 chr4 57935548 57935594 -126353068 + L2 LINE L2 3207 3252 -20 * 297 0 0 0 chr4 57935604 57935637 -126353025 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 615 249 151 0 chr4 57936026 57936211 -126352451 + MIR SINE MIR 46 258 -4 189 222 19 37 chr4 57936962 57937016 -126351646 - L2 LINE L2 -1329 1985 1933 1582 141 78 75 chr4 57937214 57937548 -126351114 + MER44D DNA MER2_type 2 606 -3 243 397 22 0 chr4 57938713 57938897 -126349765 - L3b LINE CR1 -279 1304 1117 2780 10 0 0 chr4 57939029 57939347 -126349315 - AluYb8 SINE Alu 0 339 22 1168 139 42 25 chr4 57940042 57940280 -126348382 - L1MA8 LINE L1 0 6291 6050 191 340 9 107 chr4 57943373 57943588 -126345074 - L2 LINE L2 -255 3017 2824 271 356 87 0 chr4 57944332 57944436 -126344226 + L2 LINE L2 3198 3310 -3 340 295 48 9 chr4 57944454 57944559 -126344103 + L3 LINE CR1 1466 1574 -3 327 339 32 0 chr4 57944574 57944698 -126343964 - L2 LINE L2 -8 3305 3178 2410 99 78 20 chr4 57944832 57945176 -126343486 + THE1B LTR MaLR 1 364 0 469 264 200 7 chr4 57945343 57945498 -126343164 - MIR3 SINE MIR -7 201 17 207 293 103 17 chr4 57945675 57945791 -126342871 + MIR3 SINE MIR 30 155 -53 271 281 0 91 chr4 57945797 57945918 -126342744 - MER102a DNA MER1_type 0 330 221 211 306 36 36 chr4 57946186 57946297 -126342365 + MIR SINE MIR 77 187 -75 884 262 66 25 chr4 57947487 57947773 -126340889 + LTR16A LTR ERVL 153 450 0 1421 216 61 29 chr4 57948269 57948648 -126340014 - MSTD LTR MaLR 0 396 6 463 282 88 0 chr4 57948777 57948947 -126339715 - MIR SINE MIR -5 257 73 5588 140 15 42 chr4 57948958 57949516 -126339146 + L1MA9 LINE L1 5203 5722 -590 333 0 0 0 chr4 57949516 57949553 -126339109 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 5588 140 15 42 chr4 57949553 57950053 -126338609 + L1MA9 LINE L1 5722 6234 -78 206 130 22 43 chr4 57950056 57950102 -126338560 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 526 100 33 33 chr4 57950103 57950193 -126338469 + L1MA9 LINE L1 6223 6312 0 191 163 47 0 chr4 57950209 57950252 -126338410 - MIR SINE MIR -205 57 13 433 257 104 13 chr4 57951015 57951189 -126337473 - MIR SINE MIR -57 205 20 1129 259 67 46 chr4 57951438 57951874 -126336788 + MLT1J1 LTR MaLR 1 445 -1 423 242 121 40 chr4 57952840 57952939 -126335723 - MLT1J1 LTR MaLR -329 117 29 297 217 0 0 chr4 57953255 57953315 -126335347 - MLT1J LTR MaLR -43 468 409 513 273 79 32 chr4 57953333 57953549 -126335113 - MLT1J LTR MaLR -263 248 23 350 316 52 26 chr4 57953779 57953934 -126334728 - MER5B DNA MER1_type -19 159 1 196 252 210 14 chr4 57954090 57954233 -126334429 + MIR3 SINE MIR 32 202 -6 284 228 127 13 chr4 57954305 57954384 -126334278 - L2 LINE L2 -7 3306 3219 185 182 18 0 chr4 57954495 57954550 -126334112 + CT-rich Low_complexity Low_complexity 1 56 0 306 0 0 0 chr4 57954837 57954871 -126333791 + (TG)n Simple_repeat Simple_repeat 2 35 0 1740 165 49 3 chr4 57955732 57956042 -126332620 + MSTB LTR MaLR 101 362 -2 2343 94 3 3 chr4 57956054 57956352 -126332310 + AluSp SINE Alu 1 298 -15 366 149 64 75 chr4 57956478 57956572 -126332090 + MER20 DNA MER1_type 4 96 -123 1592 167 0 22 chr4 57956599 57956874 -126331788 - AluJo SINE Alu -43 269 1 773 217 12 12 chr4 57956874 57957035 -126331627 + MER20 DNA MER1_type 55 215 -4 201 259 19 0 chr4 57958392 57958446 -126330216 + (GAATG)n Simple_repeat Simple_repeat 5 59 0 20505 157 13 59 chr4 57958477 57959697 -126328965 + L1PA13 LINE L1 1088 2363 -3800 2042 53 0 8 chr4 57959697 57959934 -126328728 + L1PA4 LINE L1 5909 6152 -3 20505 157 13 59 chr4 57959934 57963339 -126325323 + L1PA13 LINE L1 2363 5431 -732 1914 157 3 3 chr4 57963339 57963625 -126325037 - AluSx SINE Alu -26 286 1 20505 157 13 59 chr4 57963625 57964316 -126324346 + L1PA13 LINE L1 5431 6152 -11 454 266 0 56 chr4 57964475 57964618 -126324044 - MER112 DNA MER1_type -108 152 18 356 76 0 45 chr4 57964635 57964701 -126323961 + (TC)n Simple_repeat Simple_repeat 2 64 0 266 333 8 49 chr4 57965138 57965261 -126323401 - MIR SINE MIR -74 134 17 742 278 43 36 chr4 57965370 57965672 -126322990 - LTR16A LTR ERVL -146 304 1 324 204 195 44 chr4 57965764 57965877 -126322785 + MIR SINE MIR 44 173 -89 273 359 58 45 chr4 57966981 57967340 -126321322 + L2 LINE L2 2950 3313 0 287 274 41 0 chr4 57967566 57967639 -126321023 - MIR SINE MIR -83 125 50 377 300 91 0 chr4 57968937 57969047 -126319615 + MARNA DNA Mariner 72 191 -395 298 220 11 66 chr4 57969057 57969100 -126319562 - MARNA DNA Mariner -226 360 323 2165 235 80 30 chr4 57969100 57969665 -126318997 + MLT1E LTR MaLR 1 593 0 298 220 11 66 chr4 57969665 57969712 -126318950 - MARNA DNA Mariner -263 323 275 966 196 0 12 chr4 57969743 57969906 -126318756 - FRAM SINE Alu -16 160 1 750 261 72 5 chr4 57970028 57970250 -126318412 - MIR SINE MIR -21 241 5 295 314 38 24 chr4 57970260 57970446 -126318216 - MIR SINE MIR -59 203 16 466 163 33 11 chr4 57970760 57970852 -126317810 + MLT1E LTR MaLR 304 397 -196 353 294 37 0 chr4 57971073 57971182 -126317480 - MER103 DNA DNA -46 120 8 281 252 8 126 chr4 57971992 57972119 -126316543 + MIR SINE MIR 88 199 -63 383 221 122 37 chr4 57972194 57972366 -126316296 - MIR SINE MIR -67 141 5 4981 168 13 48 chr4 57972666 57973504 -126315158 - L1PB1 LINE L1 -56 6095 5229 2033 100 0 0 chr4 57973504 57973764 -126314898 - AluSc SINE Alu -1 308 49 4981 168 13 48 chr4 57973764 57974957 -126313705 - L1PB1 LINE L1 -922 5229 4161 3305 128 40 0 chr4 57975062 57975561 -126313101 + L1PA16 LINE L1 5639 6157 -9 255 193 0 35 chr4 57975965 57976022 -126312640 + L2 LINE L2 3201 3255 -17 460 279 93 0 chr4 57976023 57976152 -126312510 - L2 LINE L2 -2 3311 3171 2203 101 3 0 chr4 57976343 57976630 -126312032 + AluSc SINE Alu 1 288 -21 499 303 63 11 chr4 57976753 57976928 -126311734 + MIR3 SINE MIR 14 197 -11 497 342 35 19 chr4 57977419 57977676 -126310986 - MIR SINE MIR 0 262 2 236 304 52 9 chr4 57977881 57977996 -126310666 + L3 LINE CR1 1120 1239 -338 2243 118 0 0 chr4 57978177 57978473 -126310189 + AluSx SINE Alu 1 296 -16 1042 275 143 23 chr4 57978744 57979391 -126309271 + L2 LINE L2 2585 3303 -10 459 283 56 107 chr4 57979389 57979622 -126309040 + L3 LINE CR1 1354 1574 -3 * 180 269 39 0 chr4 57981093 57981145 -126307517 - L2 LINE L2 -81 3191 3138 21 36 0 0 chr4 57981146 57981174 -126307488 + AT_rich Low_complexity Low_complexity 1 28 0 2235 120 3 0 chr4 57981252 57981561 -126307101 + AluSq SINE Alu 1 310 -3 22 0 0 0 chr4 57982331 57982353 -126306309 + AT_rich Low_complexity Low_complexity 1 22 0 510 289 41 27 chr4 57983088 57983302 -126305360 + MIR SINE MIR 12 225 -37 2495 164 27 5 chr4 57983508 57983946 -126304716 - MLT1C LTR MaLR 0 467 20 357 112 55 0 chr4 57983959 57984032 -126304630 + MIR SINE MIR 54 132 -76 252 265 31 41 chr4 57984101 57984199 -126304463 + LTR16C LTR ERVL 81 177 -314 664 265 120 4 chr4 57984286 57984520 -126304142 + MIR SINE MIR 2 262 0 223 204 0 93 chr4 57984631 57984685 -126303977 + L2 LINE L2 3224 3272 0 628 215 11 68 chr4 57985330 57985490 -126303172 - MIR SINE MIR 0 262 111 2895 101 0 3 chr4 57985490 57985855 -126302807 - THE1B LTR MaLR 0 364 1 628 215 11 68 chr4 57985855 57985871 -126302791 - MIR SINE MIR -151 111 96 314 243 39 58 chr4 57985859 57985962 -126302700 - MIR SINE MIR -48 214 114 * 1969 157 10 0 chr4 57985963 57986262 -126302400 + AluSx SINE Alu 1 302 -10 651 203 63 14 chr4 57986309 57986452 -126302210 - MIR SINE MIR -111 151 2 693 276 42 29 chr4 57987689 57987928 -126300734 - MIR SINE MIR -7 255 14 2056 117 11 0 chr4 57988315 57988631 -126300031 + AluSx SINE Alu 1 319 0 212 333 16 33 chr4 57988863 57989046 -126299616 + GA-rich Low_complexity Low_complexity 1 180 0 2593 237 64 47 chr4 57989548 57990344 -126298318 - MER21B LTR ERV1 -53 810 1 4824 89 5 0 chr4 57990581 57991178 -126297484 + MER4A LTR ERV1 1 600 0 304 313 62 57 chr4 57991338 57991549 -126297113 - MIR SINE MIR -13 249 38 947 254 112 33 chr4 57992717 57993225 -126295437 - MLT1G1 LTR MaLR -2 593 5 234 269 50 76 chr4 57993325 57993444 -126295218 + L2 LINE L2 3196 3311 -2 9688 179 22 26 chr4 57993520 57993649 -126295013 + L1PB3 LINE L1 3088 3216 -2938 2127 142 0 0 chr4 57993649 57993952 -126294710 + AluSx SINE Alu 1 303 -9 9688 179 22 26 chr4 57993952 57995598 -126293064 + L1PB3 LINE L1 3216 4866 -1288 2477 11 0 0 chr4 57995598 57995865 -126292797 - AluYb8 SINE Alu -11 307 41 9688 179 22 26 chr4 57995865 57996013 -126292649 + L1PB3 LINE L1 4866 5013 -1141 11155 38 5 40 chr4 57996013 57997445 -126291217 - SVA Other Other 0 1386 5 9688 179 22 26 chr4 57997445 57998599 -126290063 + L1PB3 LINE L1 5013 6154 0 1481 150 0 75 chr4 57999090 57999370 -126289292 + AluJo SINE Alu 1 259 -53 3416 22 15 2 chr4 57999609 58000017 -126288645 + L1HS LINE L1 5743 6155 0 465 233 58 0 chr4 58000030 58000133 -126288529 - MIR SINE MIR -20 242 134 187 262 155 0 chr4 58000664 58000748 -126287914 - MIR SINE MIR -56 206 110 730 235 150 9 chr4 58001144 58001357 -126287305 - MIR SINE MIR -18 244 2 330 250 83 9 chr4 58001516 58001624 -126287038 + MER77 LTR ERV1 77 192 -413 * 626 258 30 83 chr4 58001602 58001865 -126286797 + MER21B LTR ERV1 98 346 -259 * 955 123 14 0 chr4 58001864 58002002 -126286660 - MLT1A1 LTR MaLR -225 140 1 468 227 0 78 chr4 58002467 58002595 -126286067 - MIR3 SINE MIR -24 184 67 21 57 0 0 chr4 58003048 58003083 -126285579 + AT_rich Low_complexity Low_complexity 1 35 0 1449 203 25 18 chr4 58003957 58004268 -126284394 - AluJo SINE Alu 0 313 1 238 200 0 40 chr4 58004583 58004633 -126284029 + LTR67 LTR ERVL 509 556 -1 300 91 0 0 chr4 58005667 58005711 -126282951 + (CA)n Simple_repeat Simple_repeat 1 44 0 417 280 201 0 chr4 58005952 58006141 -126282521 + MIR SINE MIR 22 248 -14 211 372 58 0 chr4 58006886 58006972 -126281690 + MIR SINE MIR 76 166 -96 4797 163 32 5 chr4 58008275 58009089 -126279573 - L1MA9 LINE L1 -1 6311 5476 363 250 87 0 chr4 58009256 58009360 -126279302 + MIR3 SINE MIR 85 197 -11 3034 126 61 29 chr4 58009474 58010042 -126278620 - Charlie3 DNA MER1_type -8 2702 1 201 221 15 73 chr4 58010322 58010390 -126278272 - L2 LINE L2 0 3272 3209 856 283 17 13 chr4 58010459 58010689 -126277973 + MIR SINE MIR 31 261 -1 475 325 12 6 chr4 58011104 58011270 -126277392 + (TAG)n Simple_repeat Simple_repeat 2 168 0 285 218 141 0 chr4 58011334 58011412 -126277250 - MIR SINE MIR -40 222 134 307 254 285 8 chr4 58011925 58012055 -126276607 + MIR SINE MIR 27 192 -70 1854 177 174 45 chr4 58012295 58012742 -126275920 - MLT1D LTR MaLR 0 505 1 311 266 104 32 chr4 58013895 58014049 -126274613 - LTR33A LTR ERVL -55 468 304 1759 227 135 36 chr4 58014096 58014621 -126274041 - MLT1E LTR MaLR -2 591 15 233 290 65 37 chr4 58014749 58014856 -126273806 - LTR33A LTR ERVL -361 162 53 227 376 50 0 chr4 58015272 58015373 -126273289 - L2 LINE L2 -33 3239 3134 2106 128 3 0 chr4 58018121 58018419 -126270243 + AluSx SINE Alu 1 299 -13 524 299 167 31 chr4 58018429 58018523 -126270139 + L1MC4a LINE L1 5262 5342 -2466 1486 160 24 45 chr4 58018523 58018841 -126269821 - AluJo SINE Alu 0 312 1 524 299 167 31 chr4 58018841 58019291 -126269371 + L1MC4a LINE L1 5342 5881 -1927 23 0 0 0 chr4 58019592 58019615 -126269047 + AT_rich Low_complexity Low_complexity 1 23 0 247 299 205 32 chr4 58020306 58020606 -126268056 + MER102a DNA MER1_type 1 330 0 1052 177 50 6 chr4 58020922 58021103 -126267559 - MER5A DNA MER1_type 0 189 1 2637 126 58 22 chr4 58021145 58021557 -126267105 + MSTA LTR MaLR 2 428 0 939 152 6 30 chr4 58021606 58021771 -126266891 + FRAM SINE Alu 2 162 -14 355 275 107 20 chr4 58021860 58022021 -126266641 - MLT1J2 LTR MaLR -261 250 65 592 234 25 19 chr4 58022668 58022826 -126265836 - MLT1K LTR MaLR -23 565 407 1600 199 40 14 chr4 58023769 58024116 -126264546 - MLT1A1 LTR MaLR 0 365 10 462 209 70 52 chr4 58024264 58024379 -126264283 + L2 LINE L2 3191 3307 -6 823 157 0 14 chr4 58024559 58024699 -126263963 + FLAM_C SINE Alu 6 143 0 183 161 0 0 chr4 58024794 58024825 -126263837 + MER5B DNA MER1_type 19 49 -129 198 0 0 0 chr4 58025851 58025873 -126262789 + (TTA)n Simple_repeat Simple_repeat 3 24 0 2049 37 4 0 chr4 58025873 58026115 -126262547 - L1PA3 LINE L1 -18 6137 5895 2821 3 0 0 chr4 58026246 58026557 -126262105 + AluYb8 SINE Alu 1 311 -7 1746 173 0 7 chr4 58028109 58028404 -126260258 - AluJo SINE Alu -19 293 1 345 286 17 42 chr4 58028432 58028551 -126260111 - MIR SINE MIR -82 180 65 519 235 215 7 chr4 58029167 58029316 -126259346 - MER5A DNA MER1_type -6 183 4 592 234 120 5 chr4 58030916 58031108 -126257554 - MIR SINE MIR -48 214 1 1765 130 47 4 chr4 58031158 58031435 -126257227 - AluJb SINE Alu -23 289 1 351 0 0 0 chr4 58031447 58031486 -126257176 + (TG)n Simple_repeat Simple_repeat 1 39 0 1055 330 84 1 chr4 58032205 58032393 -126256269 - L2 LINE L2 0 3313 3142 752 263 11 0 chr4 58032393 58032579 -126256083 + MER5A DNA MER1_type 1 188 -1 1055 330 84 1 chr4 58032579 58032873 -126255789 - L2 LINE L2 -171 3142 2782 3146 153 12 40 chr4 58032996 58033565 -126255097 - MER34B LTR ERV1 -12 553 1 777 178 72 24 chr4 58033705 58033913 -126254749 + LTR37A LTR ERV1 46 263 -163 309 51 0 0 chr4 58033913 58033952 -126254710 + (TG)n Simple_repeat Simple_repeat 2 40 0 2091 137 0 3 chr4 58134159 58134458 -126154204 + AluSq SINE Alu 1 298 -15 2011 141 0 35 chr4 58134458 58134777 -126153885 + AluSx SINE Alu 1 308 -4 727 185 0 0 chr4 58134986 58135105 -126153557 - AluJb SINE Alu -10 302 184 605 259 15 15 chr4 58135122 58135319 -126153343 + AluSq SINE Alu 3 199 -114 2179 94 3 3 chr4 58135536 58135824 -126152838 - AluSx SINE Alu -12 300 13 2449 79 0 6 chr4 58135855 58136170 -126152492 - AluSp SINE Alu 0 313 1 355 159 32 0 chr4 58136836 58136899 -126151763 - MSTB2 LTR MaLR 0 457 393 888 112 0 37 chr4 58136904 58137038 -126151624 + FLAM_C SINE Alu 1 129 -14 266 75 25 0 chr4 58137042 58137082 -126151580 - MSTD LTR MaLR -355 41 1 954 144 0 7 chr4 58137262 58137415 -126151247 - AluSg/x SINE Alu 0 312 161 1467 187 3 43 chr4 58137515 58137820 -126150842 + AluJb SINE Alu 3 295 -17 987 150 7 0 chr4 58138014 58138167 -126150495 + FRAM SINE Alu 5 158 -18 1980 137 7 0 chr4 58138172 58138472 -126150190 + AluSx SINE Alu 1 302 -10 577 153 153 36 chr4 58138479 58138590 -126150072 + AluJb SINE Alu 2 125 -187 2020 123 20 0 chr4 58138591 58138892 -126149770 + AluSg SINE Alu 1 307 -3 2290 107 0 0 chr4 58139119 58139419 -126149243 - AluSg SINE Alu -10 300 1 21 0 0 0 chr4 58140336 58140357 -126148305 + AT_rich Low_complexity Low_complexity 1 21 0 1336 199 65 11 chr4 58145913 58146030 -126142632 + AluJo SINE Alu 1 110 -202 1838 126 7 11 chr4 58146030 58146300 -126142362 + AluSx SINE Alu 36 304 -8 1336 199 65 11 chr4 58146300 58146458 -126142204 + AluJo SINE Alu 110 291 -21 2046 130 7 13 chr4 58146476 58146783 -126141879 + AluSx SINE Alu 1 305 -7 821 227 0 0 chr4 58146783 58146937 -126141725 + AluJo/FRAM SINE Alu 134 287 -25 1701 109 9 4 chr4 58146959 58147189 -126141473 + AluSq SINE Alu 1 231 -82 776 120 0 0 chr4 58147289 58147397 -126141265 - AluSg SINE Alu -201 109 2 1702 180 7 0 chr4 58147400 58147694 -126140968 - AluSx SINE Alu -16 296 1 254 159 0 0 chr4 58147720 58147764 -126140898 - L1ME1 LINE L1 -5 6161 6118 809 81 228 0 chr4 58147810 58147933 -126140729 - AluSp SINE Alu -162 151 1 353 244 12 12 chr4 58147935 58148021 -126140641 - L1ME1 LINE L1 -48 6118 6033 980 155 0 0 chr4 58148024 58148192 -126140470 + FRAM SINE Alu 5 172 0 1110 218 42 0 chr4 58148193 58148432 -126140230 - L1ME1 LINE L1 -117 6049 5801 2030 130 14 0 chr4 58148890 58149183 -126139479 + AluSx SINE Alu 1 297 -15 2125 105 3 32 chr4 58149258 58149573 -126139089 + AluSp SINE Alu 1 306 -7 1331 107 0 0 chr4 58149573 58149742 -126138920 + AluSg/x SINE Alu 132 300 -10 236 135 0 0 chr4 58149745 58149782 -126138880 + MER34 LTR ERV1 506 542 0 540 202 162 67 chr4 58149787 58150040 -126138622 - L1ME1 LINE L1 -369 5797 5521 1564 177 14 24 chr4 58150044 58150338 -126138324 + AluJb SINE Alu 1 291 -21 354 115 0 0 chr4 58150413 58150474 -126138188 + (A)n Simple_repeat Simple_repeat 1 61 0 417 248 114 51 chr4 58150474 58150847 -126137815 + L1M4 LINE L1 3073 3398 -2748 2123 112 0 16 chr4 58151041 58151355 -126137307 - AluSg SINE Alu -1 309 1 215 243 57 26 chr4 58151451 58151529 -126137133 + MIR SINE MIR 91 143 -65 1853 118 11 11 chr4 58151931 58152210 -126136452 + AluSx SINE Alu 2 280 -32 540 236 60 75 chr4 58152805 58152868 -126135794 + MIR SINE MIR 50 112 -150 2200 120 0 10 chr4 58152868 58153176 -126135486 - AluSx SINE Alu -7 305 1 540 236 60 75 chr4 58153176 58153311 -126135351 + MIR SINE MIR 112 245 -17 1743 171 47 0 chr4 58153649 58153764 -126134898 + AluJo SINE Alu 3 111 -201 189 0 0 0 chr4 58153764 58153785 -126134877 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1743 171 47 0 chr4 58153785 58153944 -126134718 + AluJo SINE Alu 111 290 -22 443 150 0 0 chr4 58153978 58154038 -126134624 - AluJ/FLAM SINE Alu -251 61 2 367 304 48 0 chr4 58154047 58154172 -126134490 + MIR SINE MIR 56 186 -76 2225 92 0 0 chr4 58154904 58155188 -126133474 + AluSq SINE Alu 18 301 -12 2792 113 6 0 chr4 58155574 58155936 -126132726 + THE1B LTR MaLR 1 364 0 288 299 25 46 chr4 58156584 58156825 -126131837 + HAL1b LINE L1 119 354 -994 1762 173 20 13 chr4 58156832 58157132 -126131530 + AluJo SINE Alu 1 302 -10 403 293 14 41 chr4 58158181 58158328 -126130334 - L2 LINE L2 0 3313 3171 730 316 71 35 chr4 58158432 58158982 -126129680 + L1MC4a LINE L1 5313 5882 -1926 557 183 142 33 chr4 58158993 58159113 -126129549 + FLAM_A SINE Alu 1 133 0 221 309 85 0 chr4 58159634 58159728 -126128934 - L3b LINE CR1 -185 1398 1297 292 254 70 0 chr4 58159742 58159813 -126128849 - MIR3 SINE MIR -31 177 102 1010 174 6 0 chr4 58161228 58161389 -126127273 + FRAM SINE Alu 1 161 -15 249 196 0 0 chr4 58161725 58161776 -126126886 + (TTCA)n Simple_repeat Simple_repeat 1 51 0 779 256 57 13 chr4 58161856 58162086 -126126576 + MIR SINE MIR 11 250 -12 717 223 122 15 chr4 58163546 58163743 -126124919 + MIR SINE MIR 3 220 -42 200 320 67 0 chr4 58163846 58163921 -126124741 - MIR3 SINE MIR -5 203 124 387 290 140 11 chr4 58163978 58164164 -126124498 - MIR SINE MIR -13 249 40 2150 127 0 10 chr4 58164342 58164641 -126124021 + AluSx SINE Alu 1 296 -16 28 29 0 0 chr4 58164897 58164932 -126123730 + AT_rich Low_complexity Low_complexity 1 35 0 424 306 158 20 chr4 58164993 58165297 -126123365 - L3 LINE CR1 -86 1491 1146 1116 204 198 25 chr4 58165610 58165928 -126122734 + MLT1A2 LTR MaLR 2 374 0 2194 115 0 0 chr4 58167558 58167854 -126120808 + AluSx SINE Alu 1 296 -16 1652 197 7 10 chr4 58168288 58168597 -126120065 - AluJb SINE Alu -4 308 1 1104 149 5 32 chr4 58169371 58169559 -126119103 - AluJ SINE Alu -23 289 107 2803 86 0 0 chr4 58169562 58169910 -126118752 + L1PA14 LINE L1 5805 6152 -9 29 0 0 0 chr4 58169910 58169939 -126118723 + AT_rich Low_complexity Low_complexity 1 29 0 773 162 0 8 chr4 58169939 58170056 -126118606 - AluJ SINE Alu -195 117 2 2025 149 7 0 chr4 58171809 58172110 -126116552 - AluSx SINE Alu -9 303 1 965 161 6 0 chr4 58172225 58172386 -126116276 - AluJo SINE Alu -7 305 144 835 143 6 68 chr4 58172443 58172604 -126116058 - AluJo SINE Alu -161 151 1 1356 159 163 0 chr4 58173604 58173861 -126114801 - AluSx SINE Alu -13 299 1 22 0 0 0 chr4 58174052 58174074 -126114588 + AT_rich Low_complexity Low_complexity 1 22 0 1731 158 81 3 chr4 58174213 58174523 -126114139 - L1MB1 LINE L1 -6 6162 5829 2078 119 3 0 chr4 58175042 58175335 -126113327 + AluSx SINE Alu 1 294 -18 1494 209 209 30 chr4 58175353 58175788 -126112874 - MLT1F1 LTR MaLR -2 565 53 273 268 158 16 chr4 58177082 58177209 -126111453 + MIR3 SINE MIR 48 192 -16 1195 163 7 93 chr4 58177558 58177847 -126110815 - AluJb SINE Alu -48 264 1 21 0 0 0 chr4 58177918 58177939 -126110723 + AT_rich Low_complexity Low_complexity 1 21 0 441 319 40 113 chr4 58178436 58178940 -126109722 - L2 LINE L2 0 3272 2806 411 332 80 11 chr4 58179743 58179930 -126108732 + MIR SINE MIR 7 206 -56 829 113 7 70 chr4 58179942 58180084 -126108578 + FLAM_C SINE Alu 1 133 0 2855 164 7 67 chr4 58180131 58180715 -126107947 + MER44D DNA MER2_type 2 605 0 985 113 20 7 chr4 58180833 58180984 -126107678 - FAM SINE Alu -12 173 21 1534 123 8 44 chr4 58180995 58181247 -126107415 - AluJb SINE Alu -39 273 31 993 162 33 29 chr4 58181496 58181706 -126106956 + PABL_B LTR ERV1 456 666 -1 6803 76 13 1 chr4 58182137 58183582 -126105080 - L1PA14 LINE L1 0 6161 4712 1749 164 0 13 chr4 58184598 58184897 -126103765 + AluJb SINE Alu 5 299 -13 455 250 57 29 chr4 58186542 58186682 -126101980 + MER5B DNA MER1_type 35 178 0 2036 117 0 25 chr4 58187231 58187547 -126101115 - AluSc SINE Alu -1 308 1 610 213 0 64 chr4 58187749 58187890 -126100772 + FLAM_A SINE Alu 1 132 -1 2074 142 0 0 chr4 58188582 58188892 -126099770 + AluSx SINE Alu 1 310 -2 569 317 152 5 chr4 58190032 58190256 -126098406 - MIR SINE MIR -3 259 3 1583 132 3 58 chr4 58191050 58191345 -126097317 + AluJo SINE Alu 10 288 -24 2128 111 3 9 chr4 58191354 58191669 -126096993 + AluSq SINE Alu 1 313 0 269 322 56 0 chr4 58193003 58193093 -126095569 - MIR SINE MIR -148 114 20 2165 79 7 0 chr4 58193550 58193840 -126094822 + AluY SINE Alu 1 292 -19 1764 164 7 0 chr4 58193865 58194158 -126094504 + AluJo SINE Alu 1 295 -17 323 214 0 0 chr4 58194275 58194345 -126094317 - L1PB4 LINE L1 -1 6155 6086 263 265 0 29 chr4 58194411 58194455 -126094207 + CT-rich Low_complexity Low_complexity 4 47 -22 2580 104 14 14 chr4 58194455 58194819 -126093843 - THE1B LTR MaLR 0 364 1 263 265 0 29 chr4 58194819 58194842 -126093820 + CT-rich Low_complexity Low_complexity 47 69 0 993 111 0 0 chr4 58195873 58196008 -126092654 + AluSq/x SINE Alu 1 135 -178 310 170 0 0 chr4 58196075 58196122 -126092540 + FRAM/FAM SINE Alu 14 60 -115 1671 153 3 17 chr4 58196134 58196422 -126092240 + AluJb SINE Alu 3 286 -26 693 176 135 14 chr4 58196448 58196596 -126092066 + AluSc SINE Alu 135 300 -9 843 141 58 0 chr4 58196673 58196829 -126091833 - L1MA5 LINE L1 -2 6298 6134 309 215 21 21 chr4 58196838 58196931 -126091731 - AluSp/q SINE Alu -2 301 209 180 330 211 22 chr4 58197809 58197994 -126090668 + L3 LINE CR1 507 726 -851 * 393 286 137 43 chr4 58197992 58198111 -126090551 + MIR SINE MIR 7 113 -149 2302 82 3 0 chr4 58198111 58198416 -126090246 - AluSp SINE Alu -7 306 1 393 286 137 43 chr4 58198416 58198530 -126090132 + MIR SINE MIR 113 262 0 352 255 68 119 chr4 58198540 58198588 -126090074 + L1MC5 LINE L1 6997 7046 -915 1342 168 131 8 chr4 58198588 58198856 -126089806 + AluSx SINE Alu 2 302 0 1976 88 3 51 chr4 58198858 58199154 -126089508 + AluSg SINE Alu 1 282 -28 352 255 68 119 chr4 58199154 58199337 -126089325 + L1MC5 LINE L1 7047 7219 -742 969 231 4 9 chr4 58199716 58199945 -126088717 + AluJo SINE Alu 1 228 -84 1985 125 3 0 chr4 58200045 58200340 -126088322 - AluSx SINE Alu -10 302 7 1232 213 24 21 chr4 58200472 58200759 -126087903 + AluJo SINE Alu 6 293 -19 397 245 85 8 chr4 58200798 58200952 -126087710 + L1ME3 LINE L1 5988 6159 -3 755 191 0 0 chr4 58201074 58201200 -126087462 + AluJo SINE Alu 3 128 -184 2048 89 10 7 chr4 58201209 58201501 -126087161 + AluSc SINE Alu 1 293 -16 1268 113 217 17 chr4 58201530 58201770 -126086892 + AluSq SINE Alu 1 288 -25 772 223 30 0 chr4 58201793 58201959 -126086703 + AluJo SINE Alu 132 302 -10 401 254 37 8 chr4 58202385 58202519 -126086143 + L1MC5 LINE L1 7323 7460 -501 235 299 10 10 chr4 58202519 58202616 -126086046 + MIR SINE MIR 116 212 -50 2163 104 3 0 chr4 58202616 58202952 -126085710 + AluSq SINE Alu 1 337 0 598 178 72 143 chr4 58203279 58203518 -126085144 - MER33 DNA MER1_type -2261 324 116 2059 125 0 3 chr4 58203518 58203830 -126084832 + AluSx SINE Alu 1 311 -1 598 178 72 143 chr4 58203830 58203939 -126084723 - MER33 DNA MER1_type -2469 116 1 2247 110 0 0 chr4 58204064 58204373 -126084289 + AluSg SINE Alu 1 309 -1 1618 109 89 8 chr4 58204477 58204734 -126083928 - AluSp SINE Alu -21 292 15 26 0 0 0 chr4 58205242 58205268 -126083394 + AT_rich Low_complexity Low_complexity 1 26 0 311 156 9 19 chr4 58205951 58206021 -126082641 + AluJo SINE Alu 75 121 -181 1269 112 0 16 chr4 58206021 58206208 -126082454 + AluSg SINE Alu 1 184 -126 807 178 46 20 chr4 58206209 58206266 -126082396 + AluJo SINE Alu 104 158 -154 1528 172 8 4 chr4 58206266 58206533 -126082129 + AluJo SINE Alu 12 279 -33 807 178 46 20 chr4 58206533 58206672 -126081990 + AluJo SINE Alu 158 305 -7 1697 164 7 7 chr4 58206711 58207010 -126081652 - AluJb SINE Alu -8 304 6 2258 74 3 3 chr4 58207155 58207452 -126081210 - AluY SINE Alu -13 298 2 448 219 168 26 chr4 58207515 58207670 -126080992 + MIR SINE MIR 84 260 -2 841 176 35 0 chr4 58207740 58207910 -126080752 + AluJb SINE Alu 137 312 0 1841 172 27 10 chr4 58208059 58208474 -126080188 + L1MB5 LINE L1 5353 5957 -217 1845 101 87 3 chr4 58208558 58208844 -126079818 - AluSx SINE Alu -2 310 1 973 130 0 0 chr4 58209114 58209260 -126079402 - AluSg/x SINE Alu -21 291 146 237 297 8 59 chr4 58209279 58209397 -126079265 + MIR SINE MIR 75 186 -76 2096 114 0 13 chr4 58209676 58209983 -126078679 + AluSg SINE Alu 1 303 -7 2094 85 36 10 chr4 58210008 58210313 -126078349 + AluSp SINE Alu 1 313 0 1195 122 0 0 chr4 58210370 58210542 -126078120 + AluSq SINE Alu 1 172 -141 34 24 0 0 chr4 58210954 58210995 -126077667 + AT_rich Low_complexity Low_complexity 1 41 0 1512 179 39 0 chr4 58210998 58211278 -126077384 + AluJb SINE Alu 2 292 -20 1954 98 14 4 chr4 58211280 58211577 -126077085 + AluSg SINE Alu 1 300 0 721 198 70 32 chr4 58211895 58212079 -126076583 + AluJb SINE Alu 129 312 0 829 135 0 28 chr4 58212132 58212273 -126076389 + FLAM_C SINE Alu 7 143 0 1877 114 9 54 chr4 58212278 58212413 -126076249 + AluSx SINE Alu 1 140 -172 1973 107 14 7 chr4 58212413 58212703 -126075959 + AluSg SINE Alu 1 292 -18 1877 114 9 54 chr4 58212703 58212884 -126075778 + AluSx SINE Alu 140 303 -9 767 164 0 8 chr4 58213249 58213383 -126075279 - FLAM_C SINE Alu 0 133 1 431 230 267 6 chr4 58213454 58213619 -126075043 - MIR SINE MIR -43 219 12 22 0 0 0 chr4 58216593 58216615 -126072047 + GC_rich Low_complexity Low_complexity 1 22 0 32 26 0 0 chr4 58216836 58216875 -126071787 + GC_rich Low_complexity Low_complexity 1 39 0 29 78 0 0 chr4 58217330 58217394 -126071268 + GC_rich Low_complexity Low_complexity 1 64 0 207 0 0 0 chr4 58217800 58217823 -126070839 + (A)n Simple_repeat Simple_repeat 1 23 0 259 274 57 24 chr4 58218225 58218349 -126070313 + L2 LINE L2 2692 2819 -495 229 236 18 0 chr4 58218615 58218670 -126069992 - L3 LINE CR1 -379 1198 1143 210 288 0 17 chr4 58218678 58218737 -126069925 - L3 LINE CR1 -539 1038 981 213 121 0 0 chr4 58218860 58218893 -126069769 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 2374 73 3 6 chr4 58219559 58219873 -126068789 - AluSp SINE Alu 0 313 1 24 0 0 0 chr4 58219873 58219897 -126068765 + AT_rich Low_complexity Low_complexity 1 24 0 2179 100 0 0 chr4 58219897 58220188 -126068474 - AluSx SINE Alu -19 293 3 1964 109 4 0 chr4 58220188 58220463 -126068199 - AluSx SINE Alu -35 277 1 342 228 304 13 chr4 58220750 58220908 -126067754 + L2 LINE L2 3107 3310 -3 2164 95 7 0 chr4 58221213 58221509 -126067153 + AluSp SINE Alu 1 298 -15 409 245 88 68 chr4 58221652 58221844 -126066818 - MIR3 SINE MIR -12 196 1 1712 146 10 20 chr4 58222022 58222323 -126066339 + AluJo SINE Alu 1 298 -14 1359 187 16 0 chr4 58222826 58223072 -126065590 + AluSx SINE Alu 1 250 -62 2164 98 0 7 chr4 58223076 58223383 -126065279 + AluY SINE Alu 1 311 0 1564 177 14 24 chr4 58223439 58223733 -126064929 - AluJb SINE Alu -21 291 1 540 202 162 67 chr4 58223737 58223990 -126064672 + L1ME LINE L1 5521 5797 -369 236 135 0 0 chr4 58223995 58224032 -126064630 - MER34 LTR ERV1 0 542 506 1383 111 0 7 chr4 58224032 58224259 -126064403 - AluSg/x SINE Alu -10 302 128 2178 88 3 33 chr4 58224212 58224519 -126064143 - AluSp SINE Alu -15 298 1 2030 130 14 0 chr4 58224594 58224887 -126063775 - AluSx SINE Alu -15 297 1 1187 88 0 83 chr4 58224998 58225179 -126063483 - AluSg SINE Alu -144 166 1 658 231 31 12 chr4 58225179 58225339 -126063323 - AluSg/x SINE Alu -8 304 142 439 272 19 10 chr4 58225345 58225448 -126063214 - AluSp SINE Alu -71 242 139 2173 126 10 0 chr4 58225483 58225785 -126062877 - AluSq SINE Alu -8 305 1 912 152 0 14 chr4 58225790 58225935 -126062727 - FLAM_C SINE Alu 0 143 1 4122 146 17 26 chr4 58226066 58226646 -126062016 - MER50 LTR ERV1 -23 711 127 204 67 0 0 chr4 58226646 58226676 -126061986 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 2060 115 4 0 chr4 58226676 58226955 -126061707 - AluSx SINE Alu -32 280 1 4122 146 17 26 chr4 58226955 58227091 -126061571 - MER50 LTR ERV1 -605 129 1 2177 118 3 0 chr4 58227823 58228127 -126060535 + AluSx SINE Alu 1 305 -7 627 233 177 81 chr4 58228291 58228579 -126060083 + MER57B LTR ERV1 3 331 -72 1319 163 64 43 chr4 58228579 58228708 -126059954 + AluJo SINE Alu 1 126 -186 2325 103 7 0 chr4 58228708 58229018 -126059644 + AluSp SINE Alu 1 312 -1 1319 163 64 43 chr4 58229018 58229170 -126059492 + AluJo SINE Alu 126 288 -24 627 233 177 81 chr4 58229170 58229251 -126059411 + MER57B LTR ERV1 331 403 0 438 231 28 19 chr4 58229295 58229403 -126059259 + MER5A DNA MER1_type 4 112 -77 2283 117 0 0 chr4 58229405 58229713 -126058949 - AluSx SINE Alu -2 310 3 1182 188 173 22 chr4 58229715 58229986 -126058676 - AluJo SINE Alu 0 312 1 637 263 45 0 chr4 58230010 58230166 -126058496 + MIR SINE MIR 6 168 -94 1462 158 37 44 chr4 58230168 58230359 -126058303 - AluSx SINE Alu -6 306 116 2474 54 7 3 chr4 58230359 58230654 -126058008 - AluY SINE Alu -15 296 1 1462 158 37 44 chr4 58230654 58230760 -126057902 - AluSx SINE Alu -196 116 11 826 191 0 0 chr4 58231123 58231264 -126057398 + FLAM_C SINE Alu 1 141 -2 1690 211 20 27 chr4 58231393 58231801 -126056861 + L1M4 LINE L1 4774 5178 -968 1128 154 151 111 chr4 58233270 58233485 -126055177 - MER58B DNA MER1_type -2079 341 107 1818 151 27 20 chr4 58233485 58233777 -126054885 + AluSx SINE Alu 1 294 -18 1128 154 151 111 chr4 58233777 58233886 -126054776 - MER58B DNA MER1_type -2313 107 4 1944 145 3 13 chr4 58234294 58234597 -126054065 + AluJo SINE Alu 1 300 -12 212 211 14 0 chr4 58235566 58235637 -126053025 + (TG)n Simple_repeat Simple_repeat 2 73 0 1520 166 92 21 chr4 58236206 58236489 -126052173 + AluJo SINE Alu 1 303 -9 1276 153 9 52 chr4 58236532 58236761 -126051901 - MER20 DNA MER1_type 0 219 1 206 352 114 0 chr4 58236800 58236888 -126051774 + MIR SINE MIR 165 262 0 2353 90 10 0 chr4 58237037 58237347 -126051315 - AluSp SINE Alu 0 313 1 23 0 0 0 chr4 58237400 58237423 -126051239 + AT_rich Low_complexity Low_complexity 1 23 0 1783 156 0 30 chr4 58237834 58238129 -126050533 + AluJb SINE Alu 5 290 -22 21 82 0 0 chr4 58238202 58238251 -126050411 + AT_rich Low_complexity Low_complexity 1 49 0 316 244 25 50 chr4 58238366 58238450 -126050212 - LTR33A LTR ERVL -2 521 439 2601 121 3 24 chr4 58238450 58238822 -126049840 + THE1B LTR MaLR 1 364 0 316 244 25 50 chr4 58238822 58238856 -126049806 - LTR33A LTR ERVL -84 439 406 260 267 105 0 chr4 58238985 58239071 -126049591 - LTR33A LTR ERVL -387 136 42 1978 107 25 44 chr4 58239155 58239474 -126049188 + AluSp SINE Alu 1 313 0 2328 100 0 3 chr4 58239500 58239800 -126048862 - AluSx SINE Alu -13 299 1 23 0 0 0 chr4 58239805 58239828 -126048834 + AT_rich Low_complexity Low_complexity 1 23 0 703 158 53 0 chr4 58239915 58240029 -126048633 + FRAM SINE Alu 32 151 -25 380 287 9 17 chr4 58240063 58240178 -126048484 + L1MC5 LINE L1 7806 7919 -42 701 217 150 38 chr4 58240441 58240681 -126047981 + L1ME3A LINE L1 5900 6166 -4 29 70 0 0 chr4 58240947 58241004 -126047658 + AT_rich Low_complexity Low_complexity 1 57 0 21 36 0 0 chr4 58241934 58241962 -126046700 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 58242764 58242786 -126045876 + AT_rich Low_complexity Low_complexity 1 22 0 408 303 25 0 chr4 58243822 58243944 -126044718 - L3 LINE CR1 -14 1563 1439 1990 118 10 45 chr4 58243954 58244268 -126044394 + AluSx SINE Alu 1 303 -9 187 284 0 45 chr4 58244290 58244357 -126044305 - L3 LINE CR1 -239 1338 1275 192 267 172 78 chr4 58245155 58245271 -126043391 - MIR SINE MIR -76 186 60 2282 101 0 0 chr4 58245422 58245718 -126042944 + AluSc SINE Alu 1 296 -13 1862 161 58 97 chr4 58245727 58246224 -126042438 + L1MC4 LINE L1 7474 7951 -91 911 159 8 0 chr4 58246249 58246381 -126042281 + FLAM_C SINE Alu 1 133 0 405 338 141 44 chr4 58246918 58247580 -126041082 + L2 LINE L2 2054 2779 -535 279 275 58 33 chr4 58247879 58247999 -126040663 + L2 LINE L2 3167 3289 -24 25 21 0 43 chr4 58248786 58248814 -126039848 + AT_rich Low_complexity Low_complexity 1 28 -17 224 77 26 0 chr4 58248814 58248853 -126039809 + (TA)n Simple_repeat Simple_repeat 1 40 0 25 21 0 43 chr4 58248853 58248871 -126039791 + AT_rich Low_complexity Low_complexity 28 45 0 210 216 31 31 chr4 58249120 58249217 -126039445 + (TTATA)n Simple_repeat Simple_repeat 1 97 0 1641 128 102 4 chr4 58249222 58249487 -126039175 - AluJo SINE Alu -19 293 3 656 153 35 11 chr4 58249564 58249696 -126038966 + L1MB7 LINE L1 6009 6141 -33 2075 119 13 3 chr4 58249696 58249998 -126038664 + AluSx SINE Alu 2 306 -6 23 0 0 0 chr4 58249998 58250021 -126038641 + AT_rich Low_complexity Low_complexity 1 23 0 231 128 0 0 chr4 58250021 58250060 -126038602 + L1ME1 LINE L1 6120 6158 -8 873 188 53 40 chr4 58250715 58250951 -126037711 + MER33 DNA MER1_type 1 225 -88 2428 78 3 7 chr4 58250951 58251259 -126037403 + AluY SINE Alu 1 307 -4 2136 123 3 3 chr4 58251259 58251560 -126037102 + AluSx SINE Alu 1 301 -11 682 200 0 50 chr4 58251788 58251928 -126036734 - FLAM_C SINE Alu 0 133 1 964 171 12 6 chr4 58252052 58252216 -126036446 + AluJb SINE Alu 138 302 -10 512 123 35 105 chr4 58252238 58252352 -126036310 + AluJb SINE Alu 29 134 -178 1781 158 0 14 chr4 58252476 58252612 -126036050 + AluSx SINE Alu 1 137 -175 2300 110 0 0 chr4 58252612 58252921 -126035741 + AluSx SINE Alu 1 309 -3 1781 158 0 14 chr4 58252921 58253068 -126035594 + AluSx SINE Alu 137 280 -32 2193 123 0 19 chr4 58253322 58253630 -126035032 - AluSx SINE Alu -10 302 1 26 0 0 0 chr4 58253845 58253871 -126034791 + AT_rich Low_complexity Low_complexity 1 26 0 2362 90 0 0 chr4 58253921 58254210 -126034452 - AluSc SINE Alu -20 289 1 256 292 180 59 chr4 58254967 58255323 -126033339 - MLT1K LTR MaLR -6 582 184 1074 123 6 6 chr4 58255954 58256117 -126032545 + FRAM SINE Alu 5 167 -9 362 282 39 50 chr4 58256279 58256460 -126032202 - MER112 DNA MER1_type 0 260 82 695 269 91 27 chr4 58257368 58257706 -126030956 - L1ME LINE L1 -302 5819 5458 2247 102 0 20 chr4 58257731 58258034 -126030628 + AluSx SINE Alu 1 297 -15 288 221 91 13 chr4 58258752 58258829 -126029833 - LTR50 LTR ERVL -697 98 16 206 207 17 17 chr4 58258902 58258960 -126029702 + (TA)n Simple_repeat Simple_repeat 1 58 0 1668 113 4 0 chr4 58259423 58259653 -126029009 - AluSg/x SINE Alu -9 301 71 212 305 34 0 chr4 58261763 58261822 -126026840 + MIR SINE MIR 19 79 -129 627 146 92 69 chr4 58263487 58263617 -126025045 + FLAM_C SINE Alu 1 133 0 1081 205 87 49 chr4 58264020 58264390 -126024272 + L1MC5 LINE L1 6957 7340 -621 204 0 83 0 chr4 58264393 58264429 -126024233 + (CAAA)n Simple_repeat Simple_repeat 4 42 0 660 206 70 49 chr4 58264431 58264718 -126023944 + L1MC5 LINE L1 7384 7676 -285 4357 174 79 89 chr4 58264727 58265063 -126023599 + Charlie1a DNA MER1_type 1 339 -2422 825 171 0 0 chr4 58265063 58265192 -126023470 + FLAM_C SINE Alu 3 131 -2 4357 174 79 89 chr4 58265192 58265884 -126022778 + Charlie1a DNA MER1_type 339 1037 -1724 1768 138 17 24 chr4 58265884 58266175 -126022487 + AluJb SINE Alu 1 289 -23 4357 174 79 89 chr4 58266175 58266186 -126022476 + Charlie1a DNA MER1_type 1037 1047 -1714 2090 117 7 0 chr4 58266186 58266477 -126022185 + AluSx SINE Alu 1 293 -19 4357 174 79 89 chr4 58266477 58266702 -126021960 + Charlie1a DNA MER1_type 1047 1254 -201 198 0 0 0 chr4 58266709 58266731 -126021931 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 1075 90 28 0 chr4 58266734 58266879 -126021783 - AluSg/x SINE Alu -30 280 132 680 131 73 7 chr4 58266879 58267016 -126021646 + Charlie1a DNA MER1_type 1254 1399 -56 423 145 13 0 chr4 58267042 58267118 -126021544 + L1MC5 LINE L1 7711 7787 -174 869 145 35 87 chr4 58267118 58267237 -126021425 + AluJo SINE Alu 2 111 -201 2191 123 0 3 chr4 58267237 58267538 -126021124 - AluSx SINE Alu -12 300 1 869 145 35 87 chr4 58267538 58267590 -126021072 + AluJo SINE Alu 111 164 -148 703 158 53 0 chr4 58267653 58267767 -126020895 + AluJo SINE Alu 168 287 -25 380 287 9 17 chr4 58267801 58267916 -126020746 + L1MC5 LINE L1 7806 7919 -42 736 204 150 38 chr4 58268179 58268419 -126020243 + L1ME3A LINE L1 5900 6166 -4 29 70 0 0 chr4 58268686 58268743 -126019919 + AT_rich Low_complexity Low_complexity 1 57 0 21 36 0 0 chr4 58269677 58269705 -126018957 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 58270507 58270529 -126018133 + AT_rich Low_complexity Low_complexity 1 22 0 408 303 25 0 chr4 58271565 58271687 -126016975 - L3 LINE CR1 -14 1563 1439 2007 117 9 44 chr4 58271697 58272013 -126016649 + AluSx SINE Alu 1 305 -7 212 269 0 45 chr4 58272035 58272102 -126016560 - L3 LINE CR1 -239 1338 1275 192 267 172 78 chr4 58272900 58273016 -126015646 - MIR SINE MIR -76 186 60 2254 108 0 0 chr4 58273167 58273463 -126015199 + AluSc SINE Alu 1 296 -13 1844 161 58 95 chr4 58273472 58273968 -126014694 + L1MC4 LINE L1 7474 7951 -91 911 159 8 0 chr4 58273993 58274125 -126014537 + FLAM_C SINE Alu 1 133 0 405 338 141 44 chr4 58274662 58275324 -126013338 + L2 LINE L2 2054 2779 -535 279 275 58 33 chr4 58275623 58275743 -126012919 + L2 LINE L2 3167 3289 -24 21 36 0 0 chr4 58276530 58276558 -126012104 + AT_rich Low_complexity Low_complexity 1 28 0 203 103 26 0 chr4 58276558 58276597 -126012065 + (TA)n Simple_repeat Simple_repeat 1 40 0 210 216 31 31 chr4 58276864 58276961 -126011701 + (TTATA)n Simple_repeat Simple_repeat 1 97 0 1641 128 102 4 chr4 58276966 58277231 -126011431 - AluJo SINE Alu -19 293 3 656 153 35 11 chr4 58277308 58277440 -126011222 + L1MB7 LINE L1 6009 6141 -33 2051 116 13 10 chr4 58277440 58277743 -126010919 + AluSx SINE Alu 2 305 -7 23 0 0 0 chr4 58277743 58277766 -126010896 + AT_rich Low_complexity Low_complexity 1 23 0 231 128 0 0 chr4 58277766 58277805 -126010857 + L1ME1 LINE L1 6120 6158 -8 873 188 53 40 chr4 58278460 58278696 -126009966 + MER33 DNA MER1_type 1 225 -88 2428 78 3 7 chr4 58278696 58279004 -126009658 + AluY SINE Alu 1 307 -4 2092 123 7 3 chr4 58279004 58279304 -126009358 + AluSx SINE Alu 1 301 -11 682 200 0 50 chr4 58279532 58279672 -126008990 - FLAM_C SINE Alu 0 133 1 236 277 77 0 chr4 58279702 58279767 -126008895 + MER58 DNA MER1_type 191 260 -2160 1006 176 6 6 chr4 58279796 58279961 -126008701 + FRAM SINE Alu 2 166 0 548 100 36 118 chr4 58279983 58280093 -126008569 + FLAM_C SINE Alu 29 129 -14 1793 155 0 14 chr4 58280218 58280354 -126008308 + AluSx SINE Alu 1 137 -175 2284 113 0 0 chr4 58280354 58280663 -126007999 + AluSx SINE Alu 1 309 -3 1793 155 0 14 chr4 58280663 58280810 -126007852 + AluSx SINE Alu 137 280 -32 2207 121 0 19 chr4 58281064 58281371 -126007291 - AluSx SINE Alu -11 301 1 26 0 0 0 chr4 58281586 58281612 -126007050 + AT_rich Low_complexity Low_complexity 1 26 0 2457 70 0 0 chr4 58281662 58281949 -126006713 - AluSc SINE Alu -20 289 3 2117 119 7 0 chr4 58281951 58282246 -126006416 - AluSx SINE Alu -15 297 1 502 221 7 76 chr4 58283345 58283490 -126005172 + L2 LINE L2 3171 3305 -8 298 252 135 9 chr4 58283491 58283602 -126005060 - MER117 DNA MER1_type -28 169 45 21 36 0 0 chr4 58283623 58283651 -126005011 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 58283680 58283703 -126004959 + AT_rich Low_complexity Low_complexity 1 23 0 305 331 125 24 chr4 58284324 58284572 -126004090 + L2 LINE L2 2495 2767 -547 390 329 92 95 chr4 58284712 58284995 -126003667 + L2 LINE L2 2982 3263 -9 2223 85 14 0 chr4 58284998 58285291 -126003371 + AluY SINE Alu 1 297 -14 2368 82 0 20 chr4 58286583 58286889 -126001773 - AluSq SINE Alu -12 301 2 367 146 234 102 chr4 58287333 58287416 -126001246 + MER106B DNA MER1_type 904 975 -84 2156 124 0 0 chr4 58287416 58287707 -126000955 + AluSp SINE Alu 5 295 -18 367 146 234 102 chr4 58287707 58287760 -126000902 + MER106B DNA MER1_type 975 1058 -1 231 114 0 0 chr4 58288421 58288456 -126000206 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 1760 178 3 3 chr4 58289033 58289326 -125999336 + AluSx SINE Alu 1 293 -19 601 240 8 0 chr4 58289492 58289621 -125999041 + AluJo SINE Alu 6 135 -177 2120 108 0 74 chr4 58289668 58289993 -125998669 + AluSg SINE Alu 2 302 -8 428 88 0 0 chr4 58290038 58290095 -125998567 - AluJo SINE Alu -15 297 241 * 850 159 68 37 chr4 58290094 58290135 -125998527 - AluJo SINE Alu -139 173 135 1761 164 33 20 chr4 58290135 58290439 -125998223 - AluSx SINE Alu 0 312 5 850 159 68 37 chr4 58290439 58290560 -125998102 - AluJo SINE Alu -177 135 6 2335 76 7 3 chr4 58290573 58290864 -125997798 - AluSc SINE Alu -17 292 1 290 254 246 0 chr4 58290878 58291016 -125997646 + MIR3 SINE MIR 23 194 -14 544 168 59 0 chr4 58291221 58291322 -125997340 - U6 snRNA snRNA 0 107 1 1824 160 0 7 chr4 58291684 58291971 -125996691 + AluJb SINE Alu 1 285 -27 1324 225 51 30 chr4 58292188 58292552 -125996110 + L1MC4 LINE L1 7114 7586 -292 1712 125 54 14 chr4 58292552 58292832 -125995830 + AluSx SINE Alu 1 291 -21 1324 225 51 30 chr4 58292832 58292922 -125995740 + L1MC4 LINE L1 7586 7673 -205 1399 183 17 64 chr4 58292981 58293038 -125995624 + L1MC4 LINE L1 7699 7757 -285 1969 101 0 33 chr4 58293038 58293314 -125995348 + AluSx SINE Alu 24 290 -22 1399 183 17 64 chr4 58293314 58293571 -125995091 + L1MC4 LINE L1 7757 7996 -46 1709 170 24 3 chr4 58293571 58293859 -125994803 - AluJb SINE Alu -18 294 1 1399 183 17 64 chr4 58293859 58293904 -125994758 + L1MC4 LINE L1 7996 8042 0 215 326 0 0 chr4 58294761 58294856 -125993806 + A-rich Low_complexity Low_complexity 1 95 0 207 244 89 73 chr4 58295156 58295279 -125993383 + L2 LINE L2 2196 2320 -994 925 162 0 19 chr4 58295355 58295509 -125993153 + AluJo SINE Alu 1 151 -161 2103 96 3 11 chr4 58295514 58295796 -125992866 + AluSx SINE Alu 1 280 -32 960 167 0 77 chr4 58295810 58295838 -125992824 + L1MA5 LINE L1 5941 5970 -330 1738 176 23 3 chr4 58295838 58296144 -125992518 + AluSx SINE Alu 1 312 0 960 167 0 77 chr4 58296144 58296325 -125992337 + L1MA5 LINE L1 5970 6135 -165 2416 90 3 0 chr4 58296325 58296637 -125992025 + AluSp SINE Alu 1 313 0 2179 94 3 3 chr4 58296668 58296956 -125991706 + AluSx SINE Alu 13 300 -12 2193 102 17 3 chr4 58297110 58297403 -125991259 - AluSx SINE Alu -15 297 1 325 191 35 106 chr4 58298051 58298192 -125990470 + L1MC4 LINE L1 7008 7138 -904 876 251 235 0 chr4 58298200 58298566 -125990096 + L1MC4a LINE L1 7105 7556 -252 820 115 85 0 chr4 58298648 58298778 -125989884 + MER46A DNA MER2_type 96 236 0 1483 136 25 25 chr4 58298811 58299053 -125989609 + AluSx SINE Alu 2 243 -69 364 219 213 6 chr4 58299081 58299241 -125989421 + L1MC4 LINE L1 7747 7939 -103 1321 169 35 52 chr4 58299581 58299871 -125988791 - AluJb SINE Alu -27 285 1 635 158 25 24 chr4 58299954 58300086 -125988576 + L1MA5 LINE L1 6164 6296 -7 2472 43 10 13 chr4 58300091 58300394 -125988268 + AluY SINE Alu 1 302 -9 450 53 0 0 chr4 58300409 58300466 -125988196 + (CA)n Simple_repeat Simple_repeat 2 58 0 1458 248 145 34 chr4 58300621 58301146 -125987516 + MLT1E LTR MaLR 10 592 -1 377 160 149 64 chr4 58302503 58302597 -125986065 - U13 snRNA snRNA -2 102 1 2013 114 7 4 chr4 58303336 58303650 -125985012 - AluSx SINE Alu 0 315 1 1009 130 0 7 chr4 58303831 58303977 -125984685 + AluY SINE Alu 22 166 -145 1401 174 67 0 chr4 58305283 58305536 -125983126 + AluJo SINE Alu 28 297 -15 761 133 0 113 chr4 58307234 58307384 -125981278 - FLAM_C SINE Alu -5 138 6 810 175 0 29 chr4 58307687 58307824 -125980838 - FLAM_A SINE Alu 0 133 1 1971 128 0 4 chr4 58307874 58308148 -125980514 - AluSx SINE Alu -19 293 21 1730 167 87 22 chr4 58308532 58308898 -125979764 + L1MC4 LINE L1 7360 7749 -293 654 200 0 0 chr4 58308948 58309053 -125979609 - AluJb SINE Alu -14 298 194 441 217 112 0 chr4 58309053 58309205 -125979457 + L1MC4 LINE L1 7869 8037 -5 21 0 0 0 chr4 58309206 58309227 -125979435 + AT_rich Low_complexity Low_complexity 1 21 0 877 269 26 23 chr4 58309791 58310055 -125978607 + MLT1G1 LTR MaLR 1 265 -330 1563 116 0 5 chr4 58310066 58310282 -125978380 + AluSx SINE Alu 11 225 -87 22 35 0 0 chr4 58310311 58310340 -125978322 + GC_rich Low_complexity Low_complexity 1 29 0 608 68 11 34 chr4 58310442 58310530 -125978132 + AluY SINE Alu 218 303 -8 875 259 111 32 chr4 58310550 58310866 -125977796 + MLT1G1 LTR MaLR 237 577 -13 21 0 0 0 chr4 58311034 58311055 -125977607 + AT_rich Low_complexity Low_complexity 1 21 0 2151 116 7 0 chr4 58311592 58311886 -125976776 + AluSx SINE Alu 1 296 -16 778 133 17 8 chr4 58311951 58312071 -125976591 + FLAM_C SINE Alu 1 121 -12 2169 113 3 0 chr4 58312087 58312387 -125976275 + AluSg SINE Alu 1 301 -9 1118 310 217 28 chr4 58312531 58312899 -125975763 - L2 LINE L2 -459 2855 2558 1714 156 73 21 chr4 58312899 58313154 -125975508 + MER2 DNA MER2_type 1 278 -66 1467 143 12 32 chr4 58313154 58313406 -125975256 - AluJo SINE Alu -3 309 63 1714 156 73 21 chr4 58313406 58313477 -125975185 + MER2 DNA MER2_type 278 344 0 1118 310 217 28 chr4 58313477 58314120 -125974542 - L2 LINE L2 -756 2558 1652 877 258 103 50 chr4 58314216 58314612 -125974050 + L1MC4a LINE L1 5525 5941 -1867 1999 130 20 0 chr4 58314653 58314946 -125973716 + AluSx SINE Alu 1 299 -13 1497 144 113 0 chr4 58315055 58315311 -125973351 - AluJb SINE Alu -22 290 6 954 143 0 0 chr4 58315530 58315663 -125972999 + FLAM_C SINE Alu 1 133 0 1740 131 84 0 chr4 58315841 58316116 -125972546 - AluSg SINE Alu -12 298 1 2523 64 3 0 chr4 58317218 58317529 -125971133 - AluSx SINE Alu 0 312 1 2467 52 7 3 chr4 58317538 58317847 -125970815 - AluY SINE Alu -1 310 1 298 253 0 0 chr4 58318428 58318507 -125970155 + (CAG)n Simple_repeat Simple_repeat 2 80 0 271 211 137 32 chr4 58319509 58319604 -125969058 - L2 LINE L2 -9 3304 3200 1869 105 77 14 chr4 58319679 58319851 -125968811 - AluSg SINE Alu -7 303 104 2180 89 36 17 chr4 58319851 58320153 -125968509 - AluSg SINE Alu -2 308 1 1869 105 77 14 chr4 58320153 58320265 -125968397 - AluSg SINE Alu -206 104 1 1009 111 0 0 chr4 58320265 58320400 -125968262 - AluSq/x SINE Alu -177 135 1 809 178 0 15 chr4 58321669 58321804 -125966858 - LTR8 LTR ERV1 -11 680 548 319 302 133 59 chr4 58322025 58322363 -125966299 - L3 LINE CR1 -1 1576 1214 2386 74 7 3 chr4 58322583 58322882 -125965780 + AluY SINE Alu 1 300 -11 2136 133 0 10 chr4 58323428 58323737 -125964925 - AluSx SINE Alu -4 308 3 1587 156 7 25 chr4 58324009 58324284 -125964378 + AluSx SINE Alu 1 270 -42 2164 134 0 0 chr4 58325360 58325658 -125963004 + AluSx SINE Alu 1 298 -14 1971 169 7 0 chr4 58326170 58326478 -125962184 - AluJb SINE Alu -2 310 1 332 130 29 43 chr4 58327173 58327242 -125961420 - MER3 DNA MER1_type 0 209 142 2256 97 13 26 chr4 58327253 58327564 -125961098 + AluSg SINE Alu 1 307 -3 1173 169 0 0 chr4 58327571 58327749 -125960913 + FRAM SINE Alu 1 172 -4 271 246 0 0 chr4 58327749 58327806 -125960856 - MER3 DNA MER1_type -73 136 80 306 0 0 0 chr4 58327850 58327884 -125960778 + (CA)n Simple_repeat Simple_repeat 2 35 0 2256 107 0 10 chr4 58328275 58328574 -125960088 + AluSq SINE Alu 1 296 -17 2423 80 3 0 chr4 58329211 58329511 -125959151 + AluSp SINE Alu 1 301 -12 586 219 0 0 chr4 58329684 58329807 -125958855 + FLAM_A SINE Alu 19 141 -1 2383 103 3 0 chr4 58330231 58330542 -125958120 - AluSx SINE Alu 0 312 1 1536 141 0 0 chr4 58330723 58330943 -125957719 - AluSg/x SINE Alu -2 308 89 364 209 4 8 chr4 58330943 58331033 -125957629 - AluJ/monomer SINE Alu -246 56 1 410 218 128 69 chr4 58331180 58331368 -125957294 - MLT1J LTR MaLR -208 303 105 852 136 0 0 chr4 58331495 58331613 -125957049 + FLAM_C SINE Alu 1 118 -15 2165 101 10 3 chr4 58331641 58331929 -125956733 + AluSq SINE Alu 1 290 -23 1957 162 0 3 chr4 58332071 58332374 -125956288 + AluJo SINE Alu 1 302 -10 263 275 49 61 chr4 58332675 58332745 -125955917 - MER20B DNA MER1_type -4 215 146 2227 98 0 3 chr4 58332745 58333042 -125955620 + AluSc SINE Alu 1 296 -13 263 275 49 61 chr4 58333042 58333184 -125955478 - MER20B DNA MER1_type -73 146 7 2330 77 10 17 chr4 58333261 58333561 -125955101 + AluSp SINE Alu 3 300 -13 1785 168 0 13 chr4 58333763 58334061 -125954601 + AluJb SINE Alu 14 307 -5 1640 183 98 0 chr4 58334240 58334557 -125954105 - MER7A DNA MER2_type 0 346 1 1933 151 6 6 chr4 58335604 58335916 -125952746 - AluJo SINE Alu 0 312 1 2121 102 48 3 chr4 58336379 58336674 -125951988 + AluSg SINE Alu 1 308 -2 841 211 85 18 chr4 58336934 58337157 -125951505 - MIR SINE MIR 0 262 25 1599 202 3 7 chr4 58337170 58337462 -125951200 - AluJb SINE Alu -21 291 1 340 243 0 0 chr4 58337495 58337569 -125951093 - L1ME1 LINE L1 -51 6115 6042 2166 102 20 7 chr4 58337570 58337865 -125950797 + AluSg1 SINE Alu 1 299 -10 324 0 0 0 chr4 58338104 58338140 -125950522 + (TG)n Simple_repeat Simple_repeat 2 37 0 2403 84 3 10 chr4 58338750 58339059 -125949603 + AluSp SINE Alu 1 307 -6 1030 234 78 54 chr4 58339404 58339814 -125948848 - MLT1H LTR MaLR -12 537 118 2358 86 0 23 chr4 58339928 58340232 -125948430 + AluSg SINE Alu 1 297 -13 2210 129 3 0 chr4 58340267 58340577 -125948085 + AluSp SINE Alu 3 313 0 1213 176 13 61 chr4 58341266 58341579 -125947083 + AluY SINE Alu 4 301 0 2187 108 17 0 chr4 58341709 58341997 -125946665 - AluSx SINE Alu -19 293 1 4044 92 16 14 chr4 58342197 58342625 -125946037 + MER41A LTR ERV1 1 432 -122 2340 107 0 3 chr4 58342625 58342934 -125945728 - AluSx SINE Alu 0 312 5 4044 92 16 14 chr4 58342934 58343058 -125945604 + MER41A LTR ERV1 432 554 0 268 132 342 0 chr4 58343143 58343219 -125945443 + MER41A-int LTR ERV1 1 102 -7654 4866 145 52 17 chr4 58343229 58343920 -125944742 + MER41A-int LTR ERV1 1 827 -5119 2300 109 7 0 chr4 58343920 58344223 -125944439 + AluSg SINE Alu 2 306 -4 4866 145 52 17 chr4 58344223 58344529 -125944133 + MER41A-int LTR ERV1 827 1121 -4825 5895 71 37 2 chr4 58344562 58345348 -125943314 + MER41A-int LTR ERV1 5132 5944 -2 3621 95 38 45 chr4 58345348 58345775 -125942887 + MER41A LTR ERV1 1 430 -124 2328 69 31 3 chr4 58345775 58346066 -125942596 - AluY SINE Alu -12 299 1 3621 95 38 45 chr4 58346066 58346175 -125942487 + MER41A LTR ERV1 430 535 -19 1728 94 0 0 chr4 58346175 58346399 -125942263 - AluSg/x SINE Alu -4 306 83 3621 95 38 45 chr4 58346399 58346419 -125942243 + MER41A LTR ERV1 535 554 0 2132 95 32 41 chr4 58346731 58347046 -125941616 + AluSp SINE Alu 1 312 -1 1415 155 12 36 chr4 58347424 58347676 -125940986 - AluSx SINE Alu -18 294 49 1733 161 7 13 chr4 58347775 58348080 -125940582 + AluJo SINE Alu 1 303 -9 1813 153 38 0 chr4 58348339 58348627 -125940035 - AluJb SINE Alu -13 299 1 231 305 52 58 chr4 58348839 58348993 -125939669 - MER5A DNA MER1_type -1 188 36 685 123 123 39 chr4 58349286 58349441 -125939221 - AluSc SINE Alu -4 305 138 777 183 0 14 chr4 58349720 58349862 -125938800 - FLAM_C SINE Alu -2 141 2 2178 99 17 3 chr4 58350591 58350883 -125937779 - AluSq SINE Alu -17 296 1 1469 154 16 16 chr4 58350931 58351177 -125937485 - AluJb SINE Alu -44 268 23 1157 214 58 31 chr4 58351404 58351539 -125937123 - AluJb SINE Alu 0 302 172 2349 105 0 0 chr4 58351539 58351845 -125936817 + AluSx SINE Alu 2 307 -5 1157 214 58 31 chr4 58351845 58352003 -125936659 - AluJb SINE Alu -130 172 1 809 150 8 0 chr4 58352015 58352135 -125936527 - FLAM_C SINE Alu -12 121 1 686 218 46 56 chr4 58352135 58352159 -125936503 - MER110 LTR ERV1 -296 195 172 1859 145 11 14 chr4 58352159 58352473 -125936189 - AluSx SINE Alu 0 313 1 686 218 46 56 chr4 58352473 58352644 -125936018 - MER110 LTR ERV1 -319 172 1 669 196 7 7 chr4 58354227 58354365 -125934297 - AluSg/x SINE Alu -9 301 164 240 257 11 50 chr4 58354410 58354589 -125934073 + (CACCC)n Simple_repeat Simple_repeat 1 172 0 1514 110 5 9 chr4 58355550 58355768 -125932894 - AluSq SINE Alu -5 308 92 750 156 16 0 chr4 58355788 58355916 -125932746 - FLAM_C SINE Alu 0 133 4 222 156 0 22 chr4 58356276 58356321 -125932341 + (TA)n Simple_repeat Simple_repeat 2 45 0 480 133 0 82 chr4 58356471 58356569 -125932093 + AluJb SINE Alu 211 300 -12 1373 160 24 69 chr4 58356600 58356727 -125931935 + AluJo SINE Alu 16 147 -165 2024 131 0 14 chr4 58356727 58357033 -125931629 + AluSg SINE Alu 3 304 0 1373 160 24 69 chr4 58357033 58357192 -125931470 + AluJo SINE Alu 147 290 -22 33 25 0 0 chr4 58357203 58357243 -125931419 + AT_rich Low_complexity Low_complexity 1 40 0 368 85 0 0 chr4 58357254 58357301 -125931361 + Alu SINE Alu 249 295 -7 39193 77 12 13 chr4 58357351 58358561 -125930101 + L1PA6 LINE L1 11 1221 -4933 2594 34 0 3 chr4 58358561 58358853 -125929809 + AluY SINE Alu 1 291 -20 39193 77 12 13 chr4 58358853 58363055 -125925607 + L1PA6 LINE L1 1221 5427 -727 2108 129 7 0 chr4 58363055 58363349 -125925313 + AluSc SINE Alu 1 296 -13 39193 77 12 13 chr4 58363349 58363411 -125925251 + L1PA6 LINE L1 5427 5488 -666 2185 93 31 17 chr4 58363411 58363702 -125924960 + AluSc SINE Alu 1 295 -14 39193 77 12 13 chr4 58363702 58364130 -125924532 + L1PA6 LINE L1 5488 5908 -246 2354 95 0 0 chr4 58364131 58364427 -125924235 + AluSg SINE Alu 1 296 -14 2206 111 3 3 chr4 58364653 58364951 -125923711 + AluSq SINE Alu 1 298 -15 2021 128 3 36 chr4 58364951 58365255 -125923407 + AluSx SINE Alu 1 294 -18 2377 63 17 10 chr4 58365583 58365884 -125922778 - AluY SINE Alu -8 303 1 2394 86 0 3 chr4 58366144 58366448 -125922214 - AluY SINE Alu -8 303 1 189 0 0 0 chr4 58366613 58366634 -125922028 + (TAAAAA)n Simple_repeat Simple_repeat 4 24 0 1682 109 5 0 chr4 58366688 58366909 -125921753 + AluSg/x SINE Alu 83 304 -6 2310 95 7 0 chr4 58366909 58367213 -125921449 + AluSp SINE Alu 1 307 -6 311 164 18 0 chr4 58367665 58367720 -125920942 - L1MC5 LINE L1 -54 7907 7852 237 269 120 72 chr4 58367978 58368145 -125920517 + L2 LINE L2 2587 2761 -553 2363 95 0 13 chr4 58368145 58368462 -125920200 - AluSq SINE Alu 0 313 1 2231 115 3 3 chr4 58368466 58368771 -125919891 - AluSg SINE Alu -4 306 2 583 282 23 112 chr4 58368972 58369277 -125919385 + L2 LINE L2 2985 3262 -10 2098 134 19 113 chr4 58369701 58369781 -125918881 + L1MA5 LINE L1 5872 5958 -342 2212 101 0 0 chr4 58369781 58370059 -125918603 + AluSg SINE Alu 1 278 -32 2098 134 19 113 chr4 58370059 58370101 -125918561 + L1MA5 LINE L1 5958 6002 -298 1772 170 23 3 chr4 58370101 58370407 -125918255 + AluSx SINE Alu 1 312 0 2098 134 19 113 chr4 58370407 58370588 -125918074 + L1MA5 LINE L1 6002 6119 -181 2411 76 3 7 chr4 58370588 58370890 -125917772 + AluSp SINE Alu 1 301 -12 2098 134 19 113 chr4 58370890 58371055 -125917607 + L1MA5 LINE L1 6119 6298 -2 687 176 135 14 chr4 58371132 58371280 -125917382 - AluSc SINE Alu -9 300 135 1788 153 3 17 chr4 58371306 58371594 -125917068 - AluJb SINE Alu -26 286 3 308 170 0 0 chr4 58371606 58371653 -125917009 - FRAM/FAM SINE Alu -115 60 14 990 133 0 0 chr4 58371720 58371855 -125916807 - AluSq/x SINE Alu -177 135 1 2171 106 0 0 chr4 58371856 58372140 -125916522 - AluSc SINE Alu -9 300 17 265 245 0 47 chr4 58372140 58372246 -125916416 + T-rich Low_complexity Low_complexity 1 101 0 896 150 0 0 chr4 58372392 58372525 -125916137 - FLAM_C SINE Alu 0 133 1 1142 130 0 0 chr4 58372539 58372700 -125915962 + AluSg/x SINE Alu 147 307 -3 1266 213 27 75 chr4 58372765 58373178 -125915484 + LTR37B LTR ERV1 9 401 -67 183 80 0 0 chr4 58373178 58373203 -125915459 + (TC)n Simple_repeat Simple_repeat 1 25 0 2338 181 42 101 chr4 58373270 58373820 -125914842 + LTR9 LTR ERV1 1 508 -104 2258 117 10 0 chr4 58373820 58374119 -125914543 - AluSx SINE Alu -10 302 1 2338 181 42 101 chr4 58374119 58374219 -125914443 + LTR9 LTR ERV1 508 612 0 198 250 0 0 chr4 58374358 58374402 -125914260 - L2 LINE L2 -955 2359 2316 724 172 0 16 chr4 58374413 58374541 -125914121 - AluJb SINE Alu -181 131 6 279 237 17 0 chr4 58374567 58374626 -125914036 - L2 LINE L2 -1034 2280 2221 1937 108 23 7 chr4 58374797 58375104 -125913558 + AluSp SINE Alu 2 313 0 2146 98 6 16 chr4 58375112 58375428 -125913234 + AluSq SINE Alu 1 313 0 240 260 13 13 chr4 58375489 58375566 -125913096 + (TA)n Simple_repeat Simple_repeat 1 77 0 2109 96 0 0 chr4 58375578 58375887 -125912775 - AluSc SINE Alu 0 309 1 1111 255 35 55 chr4 58375913 58376144 -125912518 + LTR16A LTR ERVL 1 219 -231 582 186 26 26 chr4 58376144 58376257 -125912405 - MER81 DNA DNA -1 113 1 1111 255 35 55 chr4 58376257 58376481 -125912181 + LTR16A LTR ERVL 219 446 -4 285 271 0 14 chr4 58376483 58376553 -125912109 - MER112 DNA MER1_type -190 70 2 2162 93 30 0 chr4 58376779 58377081 -125911581 + AluSq SINE Alu 1 311 -2 2250 50 43 0 chr4 58377413 58377695 -125910967 - AluY SINE Alu -17 294 1 1978 133 0 7 chr4 58378037 58378330 -125910332 - AluSx SINE Alu -21 291 1 629 233 6 63 chr4 58378446 58378467 -125910195 + MER45A DNA AcHobo 2 23 -1558 2456 161 29 2 chr4 58378467 58378882 -125909780 - MSTB LTR MaLR 0 426 1 629 233 6 63 chr4 58378882 58379019 -125909643 + MER45A DNA AcHobo 23 151 -27 1807 140 21 0 chr4 58379150 58379436 -125909226 + AluSq SINE Alu 1 292 -21 2055 115 7 7 chr4 58379746 58380042 -125908620 - AluSq SINE Alu -17 296 1 1577 174 17 20 chr4 58380497 58380795 -125907867 - AluJo SINE Alu -14 298 2 2048 106 3 0 chr4 58380958 58381275 -125907387 + AluSx SINE Alu 1 318 0 2412 78 0 0 chr4 58381300 58381606 -125907056 + AluY SINE Alu 1 306 -5 1739 137 56 3 chr4 58381643 58381927 -125906735 + AluSx SINE Alu 5 303 -9 1674 152 0 46 chr4 58381984 58382124 -125906538 + AluSx SINE Alu 7 127 -185 2131 115 3 0 chr4 58382124 58382420 -125906242 + AluSx SINE Alu 1 297 -15 1674 152 0 46 chr4 58382420 58382582 -125906080 + AluSx SINE Alu 127 295 -17 570 212 98 30 chr4 58382617 58382749 -125905913 - L2 LINE L2 -2 3311 3171 2269 83 0 13 chr4 58382780 58383082 -125905580 - AluY SINE Alu -7 304 7 869 180 13 0 chr4 58383257 58383407 -125905255 + AluJb SINE Alu 140 291 -21 1846 139 38 0 chr4 58383544 58383832 -125904830 + AluSx SINE Alu 1 299 -13 1952 122 3 3 chr4 58384868 58385184 -125903478 + AluSq SINE Alu 1 313 0 724 118 0 146 chr4 58385645 58385789 -125902873 + AluJb SINE Alu 2 124 -188 1543 183 13 17 chr4 58386027 58386328 -125902334 - AluJb SINE Alu -12 300 1 1950 145 0 0 chr4 58386501 58386820 -125901842 - AluSx SINE Alu 0 319 1 26 0 0 0 chr4 58386866 58386892 -125901770 + AT_rich Low_complexity Low_complexity 1 26 0 711 120 9 19 chr4 58386963 58387071 -125901591 + AluSq/x SINE Alu 1 107 -205 917 148 94 194 chr4 58387072 58387402 -125901260 + AluJo SINE Alu 4 300 -2 22 56 0 0 chr4 58387446 58387482 -125901180 + AT_rich Low_complexity Low_complexity 1 36 0 1916 146 21 73 chr4 58387624 58387748 -125900914 - MLT1A1 LTR MaLR 0 365 236 1713 161 0 37 chr4 58387748 58388070 -125900592 - AluJo SINE Alu -2 310 1 1916 146 21 73 chr4 58388070 58388330 -125900332 - MLT1A1 LTR MaLR -129 236 1 289 210 29 87 chr4 58388339 58388477 -125900185 - L1MC4a LINE L1 -1844 5964 5835 2189 94 27 0 chr4 58388488 58388786 -125899876 - AluSx SINE Alu -6 306 1 21 0 0 0 chr4 58388908 58388929 -125899733 + AT_rich Low_complexity Low_complexity 1 21 0 382 318 59 46 chr4 58389534 58389773 -125898889 + MIR SINE MIR 15 256 -6 614 178 81 60 chr4 58390351 58390474 -125898188 + MLT1J1 LTR MaLR 2 121 -325 1631 144 0 29 chr4 58390474 58390752 -125897910 + AluJo SINE Alu 1 270 -42 614 178 81 60 chr4 58390752 58390769 -125897893 + MLT1J1 LTR MaLR 121 136 -310 186 43 0 0 chr4 58390769 58390792 -125897870 + (TA)n Simple_repeat Simple_repeat 1 23 0 614 178 81 60 chr4 58390792 58390835 -125897827 + MLT1J1 LTR MaLR 136 190 -256 694 44 0 22 chr4 58390890 58390981 -125897681 - AluY SINE Alu -14 297 209 893 154 0 7 chr4 58391045 58391181 -125897481 + MER2 DNA MER2_type 1 135 -210 1247 215 61 18 chr4 58391206 58391485 -125897177 - AluJo SINE Alu -11 291 1 933 158 8 94 chr4 58391485 58391554 -125897108 + MER2 DNA MER2_type 122 195 -150 2108 99 0 0 chr4 58391554 58391872 -125896790 - AluSx SINE Alu 0 318 1 1543 143 89 0 chr4 58391874 58392154 -125896508 - AluSg1 SINE Alu -4 305 1 933 158 8 94 chr4 58392154 58392314 -125896348 + MER2 DNA MER2_type 196 335 -10 327 329 110 0 chr4 58392354 58392500 -125896162 - L2 LINE L2 -187 3126 2965 2048 120 3 16 chr4 58392585 58392722 -125895940 + AluSx SINE Alu 1 138 -174 2133 108 3 0 chr4 58392722 58393019 -125895643 + AluSx SINE Alu 1 298 -14 2048 120 3 16 chr4 58393019 58393189 -125895473 + AluSx SINE Alu 138 304 -8 444 310 77 31 chr4 58393434 58393620 -125895042 + MIR SINE MIR 64 252 -3 1188 136 5 0 chr4 58394006 58394190 -125894472 - AluSp SINE Alu -19 294 110 1797 141 28 0 chr4 58394394 58394684 -125893978 + AluSg1 SINE Alu 1 298 -11 2133 98 0 16 chr4 58394686 58394993 -125893669 + AluSx SINE Alu 1 302 -10 567 172 0 66 chr4 58394993 58395043 -125893619 + L1MD2 LINE L1 5555 5607 -635 2069 122 3 3 chr4 58395043 58395346 -125893316 + AluSx SINE Alu 1 303 -9 567 172 0 66 chr4 58395346 58395417 -125893245 + L1MD2 LINE L1 5607 5668 -574 596 170 0 0 chr4 58395420 58395514 -125893148 + AluS SINE Alu 2 95 -218 481 132 0 0 chr4 58395514 58395582 -125893080 - AluS SINE Alu -235 68 1 24 0 0 0 chr4 58395583 58395607 -125893055 + AT_rich Low_complexity Low_complexity 1 24 0 789 203 38 31 chr4 58395641 58395891 -125892771 + L1MD2 LINE L1 6066 6356 -3 2195 106 0 0 chr4 58395940 58396241 -125892421 - AluSc SINE Alu -8 301 1 1602 138 64 21 chr4 58396245 58396546 -125892116 - AluSx SINE Alu 0 312 1 2054 92 3 40 chr4 58396694 58397019 -125891643 + AluSp SINE Alu 1 313 0 690 140 9 9 chr4 58397374 58397488 -125891174 + AluJo SINE Alu 26 139 -173 2066 108 0 13 chr4 58397651 58397956 -125890706 + AluY SINE Alu 1 301 -10 220 320 21 10 chr4 58398106 58398203 -125890459 + C-rich Low_complexity Low_complexity 1 98 0 503 172 11 0 chr4 58398849 58398942 -125889720 + AluJo SINE Alu 134 227 -85 796 164 16 0 chr4 58399172 58399300 -125889362 + FLAM_C SINE Alu 2 131 -2 2884 159 23 37 chr4 58399687 58400027 -125888635 - MER89 LTR ERV1 0 559 229 2056 129 0 3 chr4 58400027 58400336 -125888326 + AluSg SINE Alu 1 308 -2 2884 159 23 37 chr4 58400336 58400562 -125888100 - MER89 LTR ERV1 -330 229 1 191 196 22 22 chr4 58400629 58400675 -125887987 + L2 LINE L2 3005 3050 -222 500 248 243 19 chr4 58400760 58400970 -125887692 - MIR SINE MIR -1 261 5 191 329 99 46 chr4 58400957 58401109 -125887553 + L2 LINE L2 3098 3257 -15 * 328 238 24 24 chr4 58401165 58401249 -125887413 + MER96 DNA MER1_type? 1 84 -91 1991 117 0 10 chr4 58401265 58401565 -125887097 - AluSx SINE Alu -15 297 1 593 116 53 0 chr4 58401627 58401722 -125886940 + HY3 scRNA scRNA 1 100 -1 341 411 22 18 chr4 58401764 58401990 -125886672 + L2 LINE L2 2554 2780 -534 3135 190 24 62 chr4 58402053 58402072 -125886590 - L1M4 LINE L1 -1355 4791 4773 2086 113 3 10 chr4 58402072 58402373 -125886289 - AluSq SINE Alu -14 299 1 3135 190 24 62 chr4 58402373 58402722 -125885940 - L1M4 LINE L1 -1373 4773 4412 2202 98 3 0 chr4 58402722 58403019 -125885643 - AluSg SINE Alu -12 298 1 1327 139 127 4 chr4 58403029 58403212 -125885450 - AluSg SINE Alu 0 315 87 2168 106 0 16 chr4 58403212 58403224 -125885438 - AluSx SINE Alu -6 306 295 257 100 20 0 chr4 58403224 58403274 -125885388 + (TA)n Simple_repeat Simple_repeat 1 51 0 2168 106 0 16 chr4 58403274 58403572 -125885090 - AluSx SINE Alu -17 295 1 1327 139 127 4 chr4 58403572 58403672 -125884990 - AluSg SINE Alu -228 87 1 3135 190 24 62 chr4 58403672 58403825 -125884837 - L1M4 LINE L1 -1743 4403 4246 1579 203 3 0 chr4 58403825 58404120 -125884542 - AluJo SINE Alu -16 296 1 3135 190 24 62 chr4 58404120 58404143 -125884519 - L1M4 LINE L1 -1900 4246 4224 324 0 0 0 chr4 58404143 58404179 -125884483 + (TG)n Simple_repeat Simple_repeat 1 36 0 3135 190 24 62 chr4 58404179 58404218 -125884444 - L1M4 LINE L1 -1922 4224 4185 1874 143 3 0 chr4 58404218 58404511 -125884151 - AluSx SINE Alu -5 307 14 3135 190 24 62 chr4 58404511 58404738 -125883924 - L1M4 LINE L1 -1961 4185 3996 271 233 0 0 chr4 58404760 58404820 -125883842 - L1M4 LINE L1 -2129 4017 3958 650 129 59 0 chr4 58404825 58404954 -125883708 - AluSp/q SINE Alu 0 314 180 2444 71 0 0 chr4 58404954 58405262 -125883400 - AluY SINE Alu -3 308 1 1795 140 34 87 chr4 58405585 58405720 -125882942 - MER1B DNA MER1_type -2373 337 196 2198 103 0 0 chr4 58405720 58406022 -125882640 + AluSg SINE Alu 1 302 -8 2193 101 0 3 chr4 58406023 58406321 -125882341 + AluSq SINE Alu 1 297 -16 1795 140 34 87 chr4 58406321 58406539 -125882123 - MER1B DNA MER1_type -2513 197 1 2057 104 7 3 chr4 58406613 58406902 -125881760 - AluSq SINE Alu -23 290 1 2164 91 3 28 chr4 58407350 58407669 -125880993 - AluSp SINE Alu -2 311 1 1669 86 9 0 chr4 58407749 58407969 -125880693 + AluSg SINE Alu 2 223 -87 230 29 0 0 chr4 58407970 58408004 -125880658 + AluSg SINE Alu 268 301 -1 24 0 0 0 chr4 58408020 58408044 -125880618 + AT_rich Low_complexity Low_complexity 1 24 0 2196 101 13 0 chr4 58408299 58408605 -125880057 - AluSx SINE Alu -2 310 1 21 0 0 0 chr4 58408869 58408890 -125879772 + AT_rich Low_complexity Low_complexity 1 21 0 1740 104 96 29 chr4 58409105 58409385 -125879277 - AluSx SINE Alu -13 299 1 960 125 0 0 chr4 58409385 58409521 -125879141 - AluSq/x SINE Alu -176 136 1 3368 117 28 31 chr4 58410120 58410275 -125878387 - MER34 LTR ERV1 -3 539 385 2026 96 4 4 chr4 58410275 58410587 -125878075 + AluSc SINE Alu 1 312 0 3368 117 28 31 chr4 58410587 58410971 -125877691 - MER34 LTR ERV1 -157 385 1 954 148 138 20 chr4 58411281 58411477 -125877185 + MER20 DNA MER1_type 1 219 0 230 289 240 8 chr4 58411711 58411832 -125876830 + MIR SINE MIR 114 262 0 * 237 258 32 86 chr4 58411810 58411903 -125876759 - MIR SINE MIR -96 166 79 2142 103 0 3 chr4 58411915 58412205 -125876457 + AluSg SINE Alu 7 295 -15 803 142 8 15 chr4 58412241 58412375 -125876287 + FLAM_C SINE Alu 1 133 0 1974 116 3 25 chr4 58412578 58412897 -125875765 - AluSx SINE Alu 0 312 1 228 164 164 0 chr4 58412903 58412964 -125875698 - L1MC/D LINE L1 -1988 5820 5750 379 188 25 12 chr4 58412977 58413057 -125875605 - MLT1K LTR MaLR -2 586 506 308 173 333 0 chr4 58413132 58413207 -125875455 + MIR SINE MIR 119 218 -44 417 281 45 30 chr4 58413236 58413435 -125875227 - L1MC4a LINE L1 -1904 5904 5703 34 0 0 22 chr4 58413445 58413472 -125875190 + AT_rich Low_complexity Low_complexity 1 28 -16 2077 113 0 3 chr4 58413472 58413772 -125874890 - AluSq SINE Alu -14 299 1 34 0 0 22 chr4 58413772 58413789 -125874873 + AT_rich Low_complexity Low_complexity 28 44 0 2068 113 7 10 chr4 58413797 58414107 -125874555 - 7SLRNA srpRNA srpRNA -11 309 1 324 374 50 0 chr4 58414152 58414291 -125874371 - L1MC4a LINE L1 -2154 5654 5509 2060 123 0 0 chr4 58414374 58414674 -125873988 - AluSx SINE Alu -12 300 1 1609 80 31 4 chr4 58414747 58414972 -125873690 - AluSg/x SINE Alu 0 310 80 302 346 125 0 chr4 58415053 58415157 -125873505 + L2 LINE L2 3191 3307 -6 26 0 0 49 chr4 58415418 58415434 -125873228 + AT_rich Low_complexity Low_complexity 1 16 -23 2063 104 0 7 chr4 58415434 58415723 -125872939 - AluSg SINE Alu -23 287 1 26 0 0 49 chr4 58415723 58415747 -125872915 + AT_rich Low_complexity Low_complexity 16 39 0 815 146 0 0 chr4 58415752 58415875 -125872787 - FLAM_C SINE Alu -19 124 2 435 314 0 0 chr4 58416102 58416204 -125872458 + L2 LINE L2 3199 3300 -13 456 19 0 0 chr4 58416468 58416521 -125872141 + (TG)n Simple_repeat Simple_repeat 2 54 0 1574 157 25 21 chr4 58416524 58416804 -125871858 - AluJo SINE Alu -31 281 1 4762 53 14 0 chr4 58416847 58417435 -125871227 + L1PA7 LINE L1 5556 6151 -3 2175 118 0 0 chr4 58417460 58417773 -125870889 - AluSq SINE Alu 0 313 1 737 177 0 57 chr4 58417775 58417916 -125870746 - AluJo/FLAM SINE Alu -169 133 1 1449 103 207 8 chr4 58418518 58418760 -125869902 - AluSg1 SINE Alu -19 290 1 2226 77 20 0 chr4 58418778 58419075 -125869587 - AluSg SINE Alu -7 303 1 2123 92 0 0 chr4 58420832 58421113 -125867549 - AluSx SINE Alu -8 304 24 371 270 54 93 chr4 58421758 58421877 -125866785 - MER117 DNA MER1_type 0 197 75 2232 110 0 0 chr4 58421877 58422176 -125866486 + AluSq SINE Alu 1 299 -14 1842 111 49 21 chr4 58422176 58422464 -125866198 + AluSx SINE Alu 1 296 -16 371 270 54 93 chr4 58422464 58422547 -125866115 - MER117 DNA MER1_type -120 77 2 2190 113 0 0 chr4 58422748 58423049 -125865613 - AluY SINE Alu -10 301 1 304 28 0 0 chr4 58424278 58424314 -125864348 + (TTTTC)n Simple_repeat Simple_repeat 4 170 0 2180 94 0 21 chr4 58424314 58424602 -125864060 - AluSx SINE Alu -30 282 1 730 231 87 0 chr4 58424605 58424778 -125863884 - MER5A DNA MER1_type 0 189 2 1412 128 18 5 chr4 58424910 58425129 -125863533 - MLT1B LTR MaLR -5 385 164 1346 151 60 122 chr4 58425141 58425300 -125863362 - AluJo SINE Alu -13 299 168 2207 122 16 3 chr4 58425300 58425604 -125863058 + 7SLRNA srpRNA srpRNA 1 308 -12 1346 151 60 122 chr4 58425604 58425763 -125862899 - AluJo SINE Alu -144 168 1 2324 114 3 0 chr4 58426071 58426378 -125862284 - AluSp SINE Alu -5 308 1 232 274 27 14 chr4 58426383 58426456 -125862206 - L2 LINE L2 -1 3312 3239 680 172 0 0 chr4 58426502 58426618 -125862044 + FLAM_C SINE Alu 1 116 -17 1880 147 10 20 chr4 58426625 58426925 -125861737 - AluSx SINE Alu -15 297 1 760 190 73 34 chr4 58426967 58427146 -125861516 + MIR SINE MIR 20 205 -57 2297 193 10 20 chr4 58427152 58427645 -125861017 + L1MA7 LINE L1 4844 5331 -815 2189 105 10 0 chr4 58427646 58427950 -125860712 + AluSp SINE Alu 3 309 -4 481 198 0 12 chr4 58427960 58428046 -125860616 + FRAM SINE Alu 71 155 -21 2718 175 90 52 chr4 58428046 58428078 -125860584 + L1MA7 LINE L1 5315 5344 -947 1762 144 4 4 chr4 58428078 58428342 -125860320 - AluSx SINE Alu -9 303 40 2718 175 90 52 chr4 58428342 58429001 -125859661 + L1MA7 LINE L1 5344 6032 -259 * 2785 162 22 20 chr4 58428605 58429106 -125859556 + L1PB4 LINE L1 5652 6153 -3 2113 94 35 3 chr4 58429351 58429638 -125859024 + AluSc SINE Alu 1 296 -13 250 234 0 0 chr4 58430089 58430136 -125858526 - MER81 DNA DNA 0 114 68 1177 150 0 0 chr4 58430136 58430316 -125858346 - AluSg/x SINE Alu -4 306 127 2092 128 0 3 chr4 58430521 58430818 -125857844 - AluSx SINE Alu -16 296 1 2109 132 0 0 chr4 58430828 58431140 -125857522 - AluSc SINE Alu 0 312 1 812 173 0 0 chr4 58431383 58431516 -125857146 + FLAM_C SINE Alu 1 133 0 1654 181 3 14 chr4 58431679 58431971 -125856691 + AluJb SINE Alu 1 289 -23 238 191 21 0 chr4 58432204 58432251 -125856411 - MLT1G LTR MaLR 0 590 543 365 216 138 66 chr4 58432263 58432444 -125856218 - MLT1H1 LTR MaLR -297 258 65 1279 170 3 110 chr4 58433070 58433387 -125855275 - AluJo SINE Alu -8 304 22 2438 83 3 0 chr4 58433411 58433711 -125854951 - AluSx SINE Alu -11 301 1 2912 128 10 0 chr4 58433758 58434316 -125854346 + L1P4 LINE L1 4882 5444 -717 626 91 241 8 chr4 58434302 58434406 -125854256 + L1PA14 LINE L1 6020 6154 -20 * 204 40 0 0 chr4 58434406 58434431 -125854231 + (TG)n Simple_repeat Simple_repeat 2 26 0 626 91 241 8 chr4 58434431 58434444 -125854218 + L1PA14 LINE L1 6154 6163 -11 352 299 22 100 chr4 58434635 58434865 -125853797 - MLT1J LTR MaLR -260 251 44 1692 180 45 58 chr4 58434865 58435074 -125853588 - MLT1A2 LTR MaLR -1 373 170 2160 115 7 0 chr4 58435074 58435369 -125853293 - AluSg SINE Alu -13 297 1 1692 180 45 58 chr4 58435369 58435537 -125853125 - MLT1A2 LTR MaLR -204 170 1 352 299 22 100 chr4 58435537 58435577 -125853085 - MLT1J LTR MaLR -467 44 2 2387 71 3 0 chr4 58436325 58436619 -125852043 - AluY SINE Alu -14 297 3 198 0 0 0 chr4 58436724 58436746 -125851916 + (TTA)n Simple_repeat Simple_repeat 2 23 0 2198 139 0 0 chr4 58436963 58437273 -125851389 + AluSx SINE Alu 1 310 -2 1701 186 80 34 chr4 58437354 58437703 -125850959 + MLT1A1 LTR MaLR 1 365 0 2633 37 0 0 chr4 58438561 58438857 -125849805 + AluY SINE Alu 3 298 -13 2220 90 0 17 chr4 58438869 58439168 -125849494 + AluSg SINE Alu 1 294 -16 404 265 114 0 chr4 58439721 58439853 -125848809 - L2 LINE L2 -4 3268 3122 661 213 0 8 chr4 58439957 58440079 -125848583 - FLAM_A SINE Alu -12 121 1 26 0 0 0 chr4 58440286 58440312 -125848350 + AT_rich Low_complexity Low_complexity 1 26 0 781 134 8 8 chr4 58440325 58440444 -125848218 - FLAM_C SINE Alu -14 119 1 1752 176 7 7 chr4 58440767 58441069 -125847593 - AluJo SINE Alu -8 304 3 1203 113 0 0 chr4 58441251 58441411 -125847251 - AluSg/x SINE Alu -17 293 134 350 125 0 0 chr4 58441412 58441460 -125847202 - Alu SINE Alu -255 48 1 2229 104 0 3 chr4 58441658 58441955 -125846707 - AluSq SINE Alu -11 302 7 2156 118 7 0 chr4 58442184 58442473 -125846189 + AluSx SINE Alu 1 291 -21 724 185 0 30 chr4 58442476 58442611 -125846051 + FLAM_A SINE Alu 1 131 -2 28 29 0 0 chr4 58442948 58442983 -125845679 + AT_rich Low_complexity Low_complexity 1 35 0 2379 104 0 0 chr4 58443262 58443571 -125845091 - AluY SINE Alu -2 309 1 264 297 0 0 chr4 58444385 58444459 -125844203 + L2 LINE L2 3199 3272 0 207 0 0 0 chr4 58444483 58444506 -125844156 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 582 15 0 0 chr4 58444505 58444572 -125844090 + (TA)n Simple_repeat Simple_repeat 2 68 0 893 142 78 0 chr4 58444572 58444713 -125843949 - AluY SINE Alu -28 283 132 180 0 0 0 chr4 58444713 58444733 -125843929 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1701 151 60 0 chr4 58444733 58444998 -125843664 - AluSx SINE Alu -31 281 1 1980 132 26 54 chr4 58445807 58446193 -125842469 + THE1C LTR MaLR 1 375 0 486 282 98 55 chr4 58446349 58446515 -125842147 - MLT1H1 LTR MaLR -175 380 223 2258 120 0 0 chr4 58446515 58446816 -125841846 - AluSx SINE Alu -11 301 1 486 282 98 55 chr4 58446816 58447016 -125841646 - MLT1H1 LTR MaLR -332 223 1 2217 125 0 3 chr4 58447828 58448141 -125840521 + AluSx SINE Alu 1 312 0 1831 156 0 17 chr4 58448459 58448740 -125839922 - AluJo SINE Alu -17 295 18 342 0 0 0 chr4 58448740 58448778 -125839884 + (CA)n Simple_repeat Simple_repeat 2 39 0 1831 156 0 17 chr4 58448778 58448791 -125839871 - AluJo SINE Alu -294 18 6 1723 211 42 3 chr4 58448913 58449245 -125839417 - MLT1A1 LTR MaLR 0 365 21 2291 103 13 0 chr4 58449413 58449713 -125838949 - AluSx SINE Alu -8 304 1 204 294 0 20 chr4 58449713 58449764 -125838898 + MIR SINE MIR 49 98 -164 23 0 0 0 chr4 58449767 58449790 -125838872 + AT_rich Low_complexity Low_complexity 1 23 0 597 181 67 0 chr4 58449795 58449900 -125838762 - FLAM_C SINE Alu -30 113 2 2093 131 24 0 chr4 58449900 58450198 -125838464 - AluJb SINE Alu -3 309 5 303 254 0 0 chr4 58450199 58450270 -125838392 + MIR SINE MIR 178 248 -14 2172 110 3 10 chr4 58450464 58450774 -125837888 + AluSx SINE Alu 1 308 -4 217 257 143 29 chr4 58451118 58451223 -125837439 - MIR SINE MIR -22 240 124 1304 275 20 9 chr4 58451255 58451600 -125837062 - LTR16A LTR ERVL -85 365 17 1551 172 10 35 chr4 58451755 58452069 -125836593 - AluJo SINE Alu -4 308 3 6043 183 25 47 chr4 58452088 58452647 -125836015 - L1M4 LINE L1 -662 5512 4942 2476 78 0 0 chr4 58452647 58452954 -125835708 - AluY SINE Alu -4 307 1 6043 183 25 47 chr4 58452954 58453370 -125835292 - L1M4 LINE L1 -1232 4942 4518 210 37 0 0 chr4 58453370 58453397 -125835265 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1985 142 0 0 chr4 58453399 58453680 -125834982 - AluJb SINE Alu -31 281 1 6043 183 25 47 chr4 58453680 58454033 -125834629 - L1M4 LINE L1 -1657 4517 4223 1585 140 124 0 chr4 58454033 58454290 -125834372 - AluSx SINE Alu -23 289 1 6043 183 25 47 chr4 58454290 58454509 -125834153 - L1M4 LINE L1 -1951 4223 4001 414 316 78 22 chr4 58454509 58454740 -125833922 - MLT1L LTR MaLR -4 611 368 2032 137 0 7 chr4 58454994 58455287 -125833375 + AluSx SINE Alu 1 291 -21 1209 223 22 4 chr4 58455376 58455649 -125833013 + L1MD2 LINE L1 6053 6330 -29 284 276 26 0 chr4 58455808 58455884 -125832778 - L1ME3 LINE L1 -6 6156 6079 2320 100 0 16 chr4 58455971 58456281 -125832381 - AluSq SINE Alu -8 305 1 2842 181 25 35 chr4 58456422 58457300 -125831362 + L1MC2 LINE L1 4964 5830 -514 1322 165 22 0 chr4 58457300 58457524 -125831138 + MSTB LTR MaLR 1 229 -197 608 200 240 13 chr4 58457545 58457713 -125830949 + MSTB LTR MaLR 5 211 -215 31 44 0 0 chr4 58457882 58457927 -125830735 + AT_rich Low_complexity Low_complexity 1 45 0 26 0 0 0 chr4 58458016 58458042 -125830620 + AT_rich Low_complexity Low_complexity 1 26 0 194 91 30 0 chr4 58458238 58458271 -125830391 + (CA)n Simple_repeat Simple_repeat 2 35 0 1245 99 23 0 chr4 58458821 58458992 -125829670 + AluSx SINE Alu 2 176 -136 1056 175 6 5 chr4 58459102 58460176 -125828486 + ALR/Alpha Satellite centromeric 1 1074 -34 478 157 157 50 chr4 58460371 58460511 -125828151 - MER50 LTR ERV1 -579 155 1 306 298 70 9 chr4 58460986 58461100 -125827562 + L1M4 LINE L1 4744 4864 -1282 2602 151 26 20 chr4 58461107 58461699 -125826963 - MER4E LTR ERV1 0 766 1 820 136 0 8 chr4 58461703 58461828 -125826834 + MLT2A2 LTR ERVL 1 124 -329 967 183 9 3 chr4 58461932 58463144 -125825518 + ALR/Alpha Satellite centromeric 1 1219 -36 1132 124 0 0 chr4 58463248 58463393 -125825269 - AluSq/x SINE Alu -167 145 1 853 261 8 48 chr4 58463510 58463778 -125824884 - MIR SINE MIR 0 262 6 2579 68 0 0 chr4 58463859 58464170 -125824492 + AluY SINE Alu 1 311 0 1950 127 19 32 chr4 58465353 58465669 -125822993 - AluSx SINE Alu 0 312 1 405 204 0 11 chr4 58466423 58466511 -125822151 - L2 LINE L2 -4 3309 3223 465 278 156 6 chr4 58466576 58466756 -125821906 - MIR SINE MIR -37 225 19 1989 98 105 0 chr4 58467140 58467416 -125821246 + AluSx SINE Alu 1 305 -7 515 219 32 134 chr4 58467982 58468095 -125820567 - MIR SINE MIR -13 249 173 1727 137 31 0 chr4 58468095 58468350 -125820312 - AluJb SINE Alu -49 263 1 515 219 32 134 chr4 58468350 58468482 -125820180 - MIR SINE MIR -89 173 29 465 185 100 23 chr4 58468549 58468679 -125819983 + L2 LINE L2 3160 3299 -14 925 274 94 41 chr4 58468848 58469359 -125819303 - MLT1L LTR MaLR -47 568 31 530 263 108 24 chr4 58470150 58470363 -125818299 + MIR SINE MIR 20 250 -12 619 86 0 0 chr4 58470981 58471062 -125817600 - AluSg/x SINE Alu -20 289 209 222 191 0 0 chr4 58471088 58471135 -125817527 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 * 413 130 68 12 chr4 58471133 58471294 -125817368 + (TTATA)n Simple_repeat Simple_repeat 5 174 0 22 56 0 0 chr4 58471294 58471330 -125817332 + AT_rich Low_complexity Low_complexity 1 36 0 297 79 56 22 chr4 58471332 58471421 -125817241 + (TATAA)n Simple_repeat Simple_repeat 3 94 0 337 51 89 13 chr4 58471549 58471628 -125817034 + (TATAA)n Simple_repeat Simple_repeat 5 89 0 870 172 0 0 chr4 58471628 58471756 -125816906 - AluSq/x SINE Alu -185 128 1 223 337 12 12 chr4 58472407 58472493 -125816169 - MIR SINE MIR -169 93 8 237 313 12 0 chr4 58472876 58472956 -125815706 + MIR3 SINE MIR 83 163 -45 240 111 0 0 chr4 58473373 58473409 -125815253 + (GGAA)n Simple_repeat Simple_repeat 3 38 0 887 135 6 22 chr4 58473434 58473612 -125815050 + (GGAA)n Simple_repeat Simple_repeat 4 178 0 311 180 0 0 chr4 58473616 58473666 -125814996 + polypurine Low_complexity Low_complexity 3 52 0 869 185 6 0 chr4 58473666 58473844 -125814818 + GA-rich Low_complexity Low_complexity 2 180 0 401 271 128 43 chr4 58474281 58474341 -125814321 + MIR SINE MIR 3 56 -206 466 274 9 0 chr4 58474341 58474454 -125814208 - MER81 DNA DNA 0 114 1 401 271 128 43 chr4 58474454 58474581 -125814081 + MIR SINE MIR 56 206 -56 650 227 236 55 chr4 58475915 58476433 -125812229 - MLT1F1 LTR MaLR 0 567 3 26 30 0 0 chr4 58476470 58476503 -125812159 + AT_rich Low_complexity Low_complexity 1 33 0 2173 103 3 3 chr4 58476582 58476882 -125811780 - AluSp SINE Alu -13 300 1 306 114 0 0 chr4 58476918 58476962 -125811700 - MLT1B LTR MaLR -2 388 345 317 316 6 35 chr4 58477083 58477254 -125811408 + G-rich Low_complexity Low_complexity 3 168 0 271 371 9 0 chr4 58477374 58477479 -125811183 - L2 LINE L2 -6 3266 3161 1972 101 33 84 chr4 58477516 58477716 -125810946 - L1MA5 LINE L1 -6 6294 6120 1742 145 0 17 chr4 58477716 58478006 -125810656 - AluJb SINE Alu -27 285 1 1972 101 33 84 chr4 58478006 58478172 -125810490 - L1MA5 LINE L1 -180 6120 5947 966 129 0 0 chr4 58478213 58478360 -125810302 + AluJb SINE Alu 1 147 -165 320 231 31 0 chr4 58478361 58478426 -125810236 + AluS SINE Alu 222 288 -13 2044 126 7 0 chr4 58478429 58478723 -125809939 + AluSx SINE Alu 1 296 -16 796 258 117 7 chr4 58478799 58479090 -125809572 - LTR50 LTR ERVL -2 793 471 1733 138 60 3 chr4 58479115 58479398 -125809264 + AluSx SINE Alu 1 299 -13 757 188 172 31 chr4 58479398 58479659 -125809003 - LTR50 LTR ERVL -495 300 3 23 0 0 0 chr4 58479900 58479923 -125808739 + AT_rich Low_complexity Low_complexity 1 23 0 2052 116 3 0 chr4 58480166 58480458 -125808204 + AluJb SINE Alu 6 298 -14 556 186 155 8 chr4 58480535 58480664 -125807998 - MER58A DNA MER1_type 0 224 77 1866 145 0 29 chr4 58480665 58480861 -125807801 - AluJb SINE Alu -10 302 102 2670 85 8 3 chr4 58480861 58481214 -125807448 + THE1A LTR MaLR 1 355 0 11846 88 4 19 chr4 58481214 58481710 -125806952 + THE1A-int LTR MaLR 1 503 -1077 2056 117 0 22 chr4 58481710 58482027 -125806635 + AluSq SINE Alu 1 310 -3 * 2323 76 13 0 chr4 58482026 58482327 -125806335 + AluSp SINE Alu 1 305 -8 11846 88 4 19 chr4 58482027 58482328 -125806334 + THE1A-int LTR MaLR 503 807 -773 2030 123 10 3 chr4 58482328 58482637 -125806025 + AluSq SINE Alu 1 311 -2 11846 88 4 19 chr4 58482637 58483741 -125804921 + THE1A-int LTR MaLR 807 1580 0 2431 105 32 0 chr4 58483741 58484085 -125804577 + THE1A LTR MaLR 1 355 0 1866 145 0 29 chr4 58484085 58484197 -125804465 - AluJb SINE Alu -207 105 1 465 190 51 0 chr4 58484197 58484276 -125804386 - MER58A DNA MER1_type -20 87 5 289 154 90 0 chr4 58484778 58484856 -125803806 + L1MC/D LINE L1 4975 5059 -1087 2130 102 7 3 chr4 58484923 58485217 -125803445 + AluSx SINE Alu 1 295 -17 828 154 0 101 chr4 58485241 58485326 -125803336 + FAM SINE Alu 1 4294967227 -254 2288 85 3 0 chr4 58485326 58485621 -125803041 + AluSp SINE Alu 1 296 -17 828 154 0 101 chr4 58485621 58485723 -125802939 + FAM SINE Alu -70 41 -8 650 166 14 29 chr4 58485725 58485864 -125802798 + AluSg/x SINE Alu 175 311 -1 1718 136 51 104 chr4 58485909 58486217 -125802445 + L1MC/D LINE L1 5258 5581 -778 1886 144 0 0 chr4 58486217 58486502 -125802160 + AluSx SINE Alu 17 301 -11 2133 98 0 16 chr4 58486504 58486811 -125801851 + AluSx SINE Alu 1 302 -10 1718 136 51 104 chr4 58486811 58486861 -125801801 + L1MC/D LINE L1 5582 5595 -764 2065 122 3 3 chr4 58486861 58487165 -125801497 + AluSx SINE Alu 1 304 -8 1718 136 51 104 chr4 58487165 58487236 -125801426 + L1MC/D LINE L1 5595 5668 -691 1849 148 0 3 chr4 58487238 58487522 -125801140 + AluSx SINE Alu 1 283 -29 384 289 16 16 chr4 58487530 58487658 -125801004 - MLT1E LTR MaLR -444 149 22 1492 147 32 4 chr4 58487660 58487911 -125800751 - AluSx SINE Alu -54 258 1 1091 227 189 48 chr4 58487911 58487986 -125800676 + MLT1E LTR MaLR 141 204 -389 1426 207 7 7 chr4 58487986 58488281 -125800381 - AluJo SINE Alu -17 295 1 1091 227 189 48 chr4 58488281 58488602 -125800060 + MLT1E LTR MaLR 204 593 0 2231 74 27 0 chr4 58488720 58489019 -125799643 + AluSg SINE Alu 1 307 -3 2142 104 3 0 chr4 58489372 58489671 -125798991 - AluSq SINE Alu -13 300 1 281 284 106 51 chr4 58489692 58489928 -125798734 + L2 LINE L2 2069 2317 -997 436 310 109 48 chr4 58490174 58490632 -125798030 + L2 LINE L2 2359 2844 -470 3271 69 21 26 chr4 58490998 58491463 -125797199 + L1PA10 LINE L1 5706 6168 0 3165 155 11 78 chr4 58491998 58492486 -125796176 + L1MB3 LINE L1 5518 6037 -146 1666 176 3 26 chr4 58492486 58492798 -125795864 + AluJb SINE Alu 5 309 -3 3165 155 11 78 chr4 58492798 58492859 -125795803 + L1MB3 LINE L1 6037 6101 -82 2068 112 78 32 chr4 58492859 58493207 -125795455 - THE1B LTR MaLR 0 364 1 3165 155 11 78 chr4 58493207 58493359 -125795303 + L1MB3 LINE L1 6101 6173 -10 1711 146 31 17 chr4 58493373 58493667 -125794995 + AluJo SINE Alu 1 298 -14 408 298 26 9 chr4 58493680 58493794 -125794868 - MIR SINE MIR -64 144 29 2749 7 0 0 chr4 58493819 58494124 -125794538 + AluY SINE Alu 2 306 -5 2033 115 3 0 chr4 58494134 58494421 -125794241 + AluSg SINE Alu 3 290 -20 670 273 184 32 chr4 58495212 58495729 -125792933 - L2 LINE L2 -16 3297 2712 933 118 0 15 chr4 58495863 58495998 -125792664 + FLAM_C SINE Alu 1 133 0 677 138 0 8 chr4 58496001 58496124 -125792538 + (GAA)n Simple_repeat Simple_repeat 2 123 0 186 271 0 0 chr4 58496797 58496845 -125791817 - L2 LINE L2 -1 3312 3265 4330 237 40 5 chr4 58497146 58498135 -125790527 + MER69 DNA AcHobo 19 1042 -1484 1034 92 0 7 chr4 58498182 58498323 -125790339 + AluSq/x SINE Alu 1 140 -173 1719 134 0 0 chr4 58498323 58498585 -125790077 + AluSq SINE Alu 41 302 -11 26 50 0 0 chr4 58498617 58498657 -125790005 + AT_rich Low_complexity Low_complexity 1 40 0 475 176 19 205 chr4 58498659 58498966 -125789696 + MER69 DNA AcHobo 2277 2526 0 2835 82 3 3 chr4 58499151 58499515 -125789147 - THE1B LTR MaLR 0 364 1 698 260 97 19 chr4 58499732 58499990 -125788672 + MLT1J LTR MaLR 1 278 -233 1958 120 14 0 chr4 58500018 58500294 -125788368 + AluSx SINE Alu 1 280 -32 336 24 0 0 chr4 58500296 58500337 -125788325 + (CA)n Simple_repeat Simple_repeat 2 42 0 3020 203 16 12 chr4 58500370 58500522 -125788140 - MER119 DNA MER1_type 0 583 433 2391 207 23 38 chr4 58500522 58501049 -125787613 - LTR40a LTR ERVL 0 519 1 3020 203 16 12 chr4 58501049 58501477 -125787185 - MER119 DNA MER1_type -150 433 1 234 305 76 30 chr4 58501524 58501655 -125787007 + MLT1J LTR MaLR 375 511 0 258 180 16 66 chr4 58501762 58501823 -125786839 - L2 LINE L2 -2 3270 3213 5190 173 5 38 chr4 58501861 58502741 -125785921 + MER49 LTR ERV1 5 912 -11 3393 18 0 0 chr4 58502741 58503122 -125785540 + L1PA3 LINE L1 5771 6151 -4 5190 173 5 38 chr4 58503122 58503149 -125785513 + MER49 LTR ERV1 912 883 -40 2003 143 3 0 chr4 58503149 58503449 -125785213 + AluSx SINE Alu 1 301 -11 5190 173 5 38 chr4 58503449 58503490 -125785172 + MER49 LTR ERV1 882 923 0 470 157 12 12 chr4 58504486 58504569 -125784093 - MER6 DNA MER2_type -4 861 779 775 118 8 25 chr4 58504573 58504692 -125783970 - AluSq/x SINE Alu -179 134 18 27 73 0 0 chr4 58505155 58505210 -125783452 + AT_rich Low_complexity Low_complexity 1 55 0 1455 171 45 8 chr4 58505221 58505485 -125783177 + AluJo SINE Alu 1 274 -38 635 247 89 16 chr4 58505599 58505789 -125782873 - MIR SINE MIR -46 216 13 1664 156 28 0 chr4 58505920 58506209 -125782453 - AluJb SINE Alu -15 297 1 1872 138 0 0 chr4 58506336 58506611 -125782051 - AluSx SINE Alu -37 275 1 728 179 8 22 chr4 58506626 58506760 -125781902 - FLAM_A SINE Alu -1 132 1 229 280 70 30 chr4 58506896 58506996 -125781666 + L1MEd LINE L1 304 407 -5712 1724 153 61 3 chr4 58507057 58507352 -125781310 + AluSx SINE Alu 1 312 0 376 283 73 70 chr4 58507400 58507686 -125780976 + L1MEd LINE L1 513 799 -5320 2175 102 0 0 chr4 58507832 58508126 -125780536 + AluSc SINE Alu 1 294 -15 2402 216 70 25 chr4 58508224 58508821 -125779841 + LTR48B LTR ERV1 1 624 -20 1968 71 64 24 chr4 58509000 58509296 -125779366 + AluY SINE Alu 1 308 -3 2047 93 6 37 chr4 58509342 58509663 -125778999 - AluSq SINE Alu -2 311 1 384 301 68 15 chr4 58510432 58510565 -125778097 + L1MC4a LINE L1 5741 5880 -1928 24 53 0 0 chr4 58510579 58510617 -125778045 + AT_rich Low_complexity Low_complexity 1 38 0 30 27 0 0 chr4 58510677 58510714 -125777948 + AT_rich Low_complexity Low_complexity 1 37 0 2165 109 0 0 chr4 58510714 58511007 -125777655 - AluSx SINE Alu -14 298 6 1736 172 0 3 chr4 58511013 58511309 -125777353 - AluJb SINE Alu -17 295 1 237 201 58 123 chr4 58511331 58511377 -125777285 + L1MC/D LINE L1 5739 5786 -2022 2139 96 0 7 chr4 58511377 58511668 -125776994 + AluSg SINE Alu 1 289 -21 237 201 58 123 chr4 58511668 58511775 -125776887 + L1MC/D LINE L1 5786 5882 -1926 1791 172 0 0 chr4 58511777 58512074 -125776588 - AluJo SINE Alu -15 297 1 1805 120 6 71 chr4 58512371 58512696 -125775966 + AluSx SINE Alu 1 304 -8 1144 229 110 43 chr4 58513220 58513480 -125775182 - MLT1D LTR MaLR -8 497 256 2114 86 3 7 chr4 58513480 58513770 -125774892 - AluSp SINE Alu -13 300 12 1144 229 110 43 chr4 58513770 58513971 -125774691 - MLT1D LTR MaLR -249 256 5 21 36 0 0 chr4 58515272 58515300 -125773362 + AT_rich Low_complexity Low_complexity 1 28 0 565 179 185 13 chr4 58515731 58515882 -125772780 + MER96B DNA MER1_type? 2 178 -239 1631 142 8 11 chr4 58515929 58516197 -125772465 - AluJo SINE Alu -15 297 31 4344 107 8 20 chr4 58516197 58516717 -125771945 + MER41B LTR ERV1 1 513 -122 2289 90 0 3 chr4 58516717 58517027 -125771635 - AluY SINE Alu -2 309 1 4344 107 8 20 chr4 58517027 58517149 -125771513 + MER41B LTR ERV1 513 635 0 229 176 0 0 chr4 58517149 58517183 -125771479 - AluJo SINE Alu -269 34 1 1038 128 0 0 chr4 58517399 58517547 -125771115 + LTR8A LTR ERV1 4 151 -576 3691 130 22 25 chr4 58518669 58519263 -125769399 + LTR8A LTR ERV1 136 727 0 663 267 62 18 chr4 58519321 58519546 -125769116 + LTR33 LTR ERVL 1 235 -286 434 274 188 5 chr4 58519572 58519758 -125768904 + LTR33 LTR ERVL 295 514 -7 1389 166 0 17 chr4 58520567 58520808 -125767854 - MLT1C LTR MaLR -230 237 1 278 336 59 0 chr4 58521382 58521501 -125767161 - MIR SINE MIR -77 185 60 10488 40 3 69 chr4 58521749 58523227 -125765435 - SVA Other Other -6 1380 1 2105 129 7 0 chr4 58523841 58524151 -125764511 - AluSx SINE Alu 0 312 1 1516 228 28 14 chr4 58524500 58524860 -125763802 - MLT1A1 LTR MaLR 0 365 1 29 28 0 0 chr4 58524975 58525011 -125763651 + AT_rich Low_complexity Low_complexity 1 36 0 5883 86 19 25 chr4 58525182 58525251 -125763411 + L1PA10 LINE L1 5328 5396 -772 2296 74 0 26 chr4 58525251 58525563 -125763099 + AluSg SINE Alu 1 304 -6 5883 86 19 25 chr4 58525563 58526334 -125762328 + L1PA10 LINE L1 5396 6163 -5 570 327 54 10 chr4 58526619 58526824 -125761838 + MIR SINE MIR 12 225 -37 454 338 103 0 chr4 58526841 58527054 -125761608 - MIR SINE MIR -5 257 23 267 337 103 48 chr4 58527246 58527768 -125760894 + L2 LINE L2 2424 2974 -340 809 269 78 7 chr4 58528029 58528273 -125760389 + MIR SINE MIR 3 262 0 359 313 229 5 chr4 58528297 58528489 -125760173 - MIR SINE MIR -21 241 7 240 220 121 44 chr4 58528631 58528722 -125759940 + MLT1J LTR MaLR 1 98 -413 758 213 132 0 chr4 58528722 58528919 -125759743 - MER58A DNA MER1_type 0 224 2 1300 198 54 92 chr4 58528964 58529402 -125759260 + MLT2C2 LTR ERVL 3 423 -41 423 0 0 0 chr4 58529402 58529449 -125759213 + (CA)n Simple_repeat Simple_repeat 2 48 0 1300 198 54 92 chr4 58529449 58529490 -125759172 + MLT2C2 LTR ERVL 423 464 0 911 218 203 38 chr4 58529495 58529744 -125758918 + MLT1J LTR MaLR 109 430 -81 4252 133 1 19 chr4 58529744 58530390 -125758272 + MER41B LTR ERV1 1 635 0 911 218 203 38 chr4 58530390 58530480 -125758182 + MLT1J LTR MaLR 430 504 -7 180 0 0 0 chr4 58530657 58530677 -125757985 + (GA)n Simple_repeat Simple_repeat 1 20 0 845 252 117 11 chr4 58531228 58531494 -125757168 + MLT1L LTR MaLR 322 615 0 884 239 63 10 chr4 58531639 58531844 -125756818 + MIR SINE MIR 34 249 -13 207 69 0 0 chr4 58533356 58533385 -125755277 + (CAA)n Simple_repeat Simple_repeat 2 30 0 493 229 42 0 chr4 58533855 58533973 -125754689 + L2 LINE L2 2422 2544 -770 1301 203 62 62 chr4 58533973 58534045 -125754617 - MLT2C1 LTR ERVL 0 397 326 2491 112 5 48 chr4 58534045 58534439 -125754223 - MER51B LTR ERV1 0 377 1 1301 203 62 62 chr4 58534439 58534751 -125753911 - MLT2C1 LTR ERVL -70 327 13 352 259 21 111 chr4 58534792 58534981 -125753681 + L2 LINE L2 2572 2743 -571 2014 184 27 95 chr4 58534981 58535458 -125753204 + MLT1D LTR MaLR 1 440 -65 2181 98 3 0 chr4 58535458 58535763 -125752899 - AluSg SINE Alu -4 306 1 2014 184 27 95 chr4 58535763 58535811 -125752851 + MLT1D LTR MaLR 440 490 -15 327 206 191 14 chr4 58535819 58535960 -125752702 + L2 LINE L2 2738 2903 -411 582 151 184 20 chr4 58535960 58536112 -125752550 + MER96B DNA MER1_type? 3 179 -238 576 251 278 27 chr4 58536130 58536338 -125752324 + L2 LINE L2 2850 3004 -309 2591 117 11 11 chr4 58536338 58536713 -125751949 - THE1C LTR MaLR 0 375 1 576 251 278 27 chr4 58536713 58536874 -125751788 + L2 LINE L2 3004 3312 -1 232 197 15 15 chr4 58536874 58536940 -125751722 + GA-rich Low_complexity Low_complexity 1 66 0 2045 111 9 32 chr4 58537360 58537675 -125750987 - AluSx SINE Alu -4 308 1 258 257 7 121 chr4 58538147 58538287 -125750375 + MIR SINE MIR 33 156 -106 180 125 0 0 chr4 58538610 58538642 -125750020 + (TG)n Simple_repeat Simple_repeat 1 32 0 504 281 143 29 chr4 58538659 58538869 -125749793 + MIR SINE MIR 29 262 0 180 0 0 0 chr4 58539531 58539551 -125749111 + (TAA)n Simple_repeat Simple_repeat 1 20 0 7825 174 104 10 chr4 58539836 58541365 -125747297 + MER52A LTR ERV1 1 1753 -2 313 221 58 29 chr4 58541368 58541472 -125747190 - L1MC/D LINE L1 -2019 5789 5683 42538 61 5 1 chr4 58541521 58547651 -125741011 + L1PA5 LINE L1 2 6153 -1 459 284 172 78 chr4 58547660 58547915 -125740747 - L1MC/D LINE L1 -482 5639 5351 2119 105 0 22 chr4 58547915 58548251 -125740411 - AluSc SINE Alu 0 309 1 459 284 172 78 chr4 58548251 58548291 -125740371 - L1MC/D LINE L1 -770 5351 5316 332 273 23 11 chr4 58548344 58548432 -125740230 - L1MC4 LINE L1 -1340 6702 6614 1971 92 14 17 chr4 58548591 58548883 -125739779 - AluSc SINE Alu -18 291 1 660 228 84 89 chr4 58548888 58549071 -125739591 + LTR37B LTR ERV1 52 234 -234 1949 129 0 29 chr4 58549071 58549382 -125739280 + AluSx SINE Alu 1 302 -10 660 228 84 89 chr4 58549382 58549545 -125739117 + LTR37B LTR ERV1 234 396 -72 209 369 108 31 chr4 58549545 58549675 -125738987 - L2 LINE L2 -265 3007 2868 441 240 10 0 chr4 58549708 58549804 -125738858 - MER5A DNA MER1_type -84 105 9 1935 154 0 3 chr4 58549863 58550168 -125738494 + AluSx SINE Alu 1 304 -8 1866 99 99 0 chr4 58550583 58550867 -125737795 + AluSp SINE Alu 1 312 -1 1826 125 0 34 chr4 58550881 58551177 -125737485 + AluSx SINE Alu 1 286 -26 1975 130 0 13 chr4 58551192 58551328 -125737334 + AluSx SINE Alu 1 137 -175 2354 88 0 3 chr4 58551328 58551635 -125737027 + AluSp SINE Alu 1 306 -7 1975 130 0 13 chr4 58551635 58551797 -125736865 + AluSx SINE Alu 137 295 -17 1038 142 57 57 chr4 58551808 58552019 -125736643 + AluJo SINE Alu 1 211 -101 259 146 24 0 chr4 58552024 58552065 -125736597 + FLAM SINE Alu 84 125 -8 2081 116 3 3 chr4 58552074 58552376 -125736286 + AluSx SINE Alu 1 302 -10 485 284 16 47 chr4 58552378 58552568 -125736094 - MIR SINE MIR -21 241 58 807 241 73 41 chr4 58552611 58552697 -125735965 - MIR SINE MIR -4 258 176 1429 163 33 42 chr4 58552697 58552812 -125735850 + AluSx SINE Alu 3 118 -194 2374 54 7 3 chr4 58552812 58553108 -125735554 + AluY SINE Alu 1 297 -14 1429 163 33 42 chr4 58553108 58553299 -125735363 + AluSx SINE Alu 118 306 -6 807 241 73 41 chr4 58553299 58553457 -125735205 - MIR SINE MIR -86 176 6 1100 188 173 22 chr4 58553481 58553752 -125734910 + AluJo SINE Alu 1 312 0 2195 116 0 0 chr4 58553754 58554064 -125734598 + AluSx SINE Alu 3 312 0 445 231 28 19 chr4 58554066 58554174 -125734488 - MER5A DNA MER1_type -77 112 4 625 235 179 84 chr4 58554218 58554299 -125734363 - MER57B LTR ERV1 0 403 331 1303 162 62 69 chr4 58554299 58554451 -125734211 - AluJo SINE Alu -14 288 137 2202 108 3 0 chr4 58554451 58554757 -125733905 - AluSp SINE Alu -1 312 6 1303 162 62 69 chr4 58554757 58554894 -125733768 - AluJo SINE Alu -165 137 1 625 235 179 84 chr4 58554894 58555182 -125733480 - MER57B LTR ERV1 -72 331 3 2064 125 3 0 chr4 58555338 58555649 -125733013 - AluSx SINE Alu 0 312 1 189 107 0 0 chr4 58555741 58555769 -125732893 + (A)n Simple_repeat Simple_repeat 1 28 0 4188 146 17 26 chr4 58556382 58556518 -125732144 + MER50 LTR ERV1 1 137 -597 1951 115 4 0 chr4 58556518 58556797 -125731865 + AluSx SINE Alu 1 280 -32 204 67 0 0 chr4 58556797 58556827 -125731835 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 4188 146 17 26 chr4 58556827 58557407 -125731255 + MER50 LTR ERV1 135 711 -23 857 152 0 14 chr4 58557538 58557683 -125730979 + FLAM_C SINE Alu 1 143 0 2069 126 10 0 chr4 58557687 58557989 -125730673 + AluSq SINE Alu 1 305 -8 912 179 0 0 chr4 58558031 58558182 -125730480 + AluJb SINE Alu 148 298 -14 484 181 0 0 chr4 58558980 58559074 -125729588 + FRAM SINE Alu 74 167 -9 220 283 44 53 chr4 58559240 58559353 -125729309 + L2 LINE L2 3143 3254 -18 2135 72 14 7 chr4 58559353 58559643 -125729019 - AluSc SINE Alu -17 292 1 755 177 0 0 chr4 58559652 58559776 -125728886 - FLAM_C SINE Alu -18 125 2 218 265 0 0 chr4 58559884 58559933 -125728729 - L2 LINE L2 -494 2820 2772 2504 55 0 0 chr4 58559965 58560274 -125728388 - AluY SINE Alu -2 309 1 2071 97 3 33 chr4 58560417 58560717 -125727945 + AluSx SINE Alu 1 291 -21 1507 237 74 25 chr4 58560789 58561265 -125727397 - MLT1F1 LTR MaLR -66 527 11 2136 117 0 19 chr4 58561332 58561649 -125727013 + AluSx SINE Alu 1 311 -1 1766 151 7 3 chr4 58561923 58562215 -125726447 + AluSx SINE Alu 1 293 -19 2209 111 0 0 chr4 58562216 58562523 -125726139 + AluSc SINE Alu 1 307 -2 2176 71 0 3 chr4 58562525 58562835 -125725827 + AluY SINE Alu 1 309 0 1185 188 132 11 chr4 58563009 58563275 -125725387 + AluSx SINE Alu 1 298 -4 4446 90 9 9 chr4 58563338 58563971 -125724691 - L1PB2 LINE L1 0 6151 5519 2280 82 0 22 chr4 58564043 58564362 -125724300 + AluSx SINE Alu 1 312 0 478 255 63 59 chr4 58564440 58564695 -125723967 + MER112 DNA MER1_type 3 258 -2 1542 188 14 3 chr4 58564696 58564988 -125723674 + AluJb SINE Alu 1 295 -17 2087 128 0 0 chr4 58564989 58565287 -125723375 + AluSq SINE Alu 1 298 -15 2281 67 0 7 chr4 58565290 58565588 -125723074 + AluY SINE Alu 1 296 -15 846 235 18 0 chr4 58565613 58565783 -125722879 - MER82 DNA MER2_type -474 179 7 307 73 0 0 chr4 58565947 58565988 -125722674 - AluSg1 SINE Alu -9 299 259 1314 85 0 50 chr4 58565992 58566193 -125722469 - AluSg1 SINE Alu -118 191 1 488 262 104 6 chr4 58566212 58566376 -125722286 + LTR50 LTR ERVL 44 223 -572 2041 110 7 16 chr4 58566436 58566744 -125721918 + AluSx SINE Alu 1 305 -7 1597 131 62 52 chr4 58566745 58567050 -125721612 + AluSp SINE Alu 1 308 -5 864 142 0 0 chr4 58567069 58567189 -125721473 + FLAM_C SINE Alu 1 120 -13 249 57 0 0 chr4 58567189 58567224 -125721438 + (CAGAA)n Simple_repeat Simple_repeat 2 36 0 1523 128 0 9 chr4 58567276 58567503 -125721159 - AluSx SINE Alu -76 236 12 678 104 0 189 chr4 58567517 58567681 -125720981 - L1PB4 LINE L1 -2 6154 6022 1487 182 36 19 chr4 58568151 58568458 -125720204 + AluJo SINE Alu 1 312 0 313 245 224 0 chr4 58568473 58568571 -125720091 - MLT1E LTR MaLR -265 328 209 1370 187 75 0 chr4 58568571 58568849 -125719813 + AluJb SINE Alu 1 299 -13 288 237 92 53 chr4 58569227 58569358 -125719304 - L1ME LINE L1 -508 5613 5478 333 0 0 0 chr4 58569405 58569442 -125719220 + (TA)n Simple_repeat Simple_repeat 2 38 0 679 154 24 71 chr4 58569463 58569632 -125719030 + MER21A LTR ERV1 1 161 -770 238 220 130 30 chr4 58569797 58569897 -125718765 - LTR16A1 LTR ERVL 0 457 348 1490 189 131 31 chr4 58570059 58570419 -125718243 + MSTD LTR MaLR 1 396 0 264 152 0 22 chr4 58570603 58570649 -125718013 + MLT1J LTR MaLR 105 149 -362 271 218 39 13 chr4 58570708 58570786 -125717876 + MLT1I LTR MaLR 318 397 -12 1946 141 159 8 chr4 58571622 58571992 -125716670 - MSTA LTR MaLR 0 428 3 335 94 0 0 chr4 58572203 58572256 -125716406 + L1MC4a LINE L1 6435 6487 -1321 327 238 50 50 chr4 58572252 58572353 -125716309 - L1ME3 LINE L1 -11 6151 6051 * 361 173 0 0 chr4 58572366 58572418 -125716244 + Alu SINE Alu 1 52 -248 1748 220 61 12 chr4 58572433 58572861 -125715801 - L1ME3 LINE L1 -120 6042 5594 1127 145 0 74 chr4 58572874 58573116 -125715546 - AluSg/x SINE Alu -23 289 66 239 167 0 0 chr4 58573310 58573346 -125715316 - L1ME3 LINE L1 -564 5606 5571 1654 139 3 27 chr4 58573371 58573672 -125714990 + AluJb SINE Alu 6 299 -13 865 209 114 5 chr4 58774332 58774533 -125514129 - L1M1 LINE L1 -5376 2189 1967 419 131 0 0 chr4 58774635 58774696 -125513966 - MLT2D LTR ERVL -351 63 3 2157 177 47 9 chr4 58774791 58775215 -125513447 + MER39 LTR ERV1 259 698 -9 9326 64 1 6 chr4 58775347 58776527 -125512135 - L1P LINE L1 -4962 1184 11 14427 37 16 1 chr4 58776528 58778336 -125510326 + L1P LINE L1 1509 3343 -2803 1487 209 37 9 chr4 58778436 58778761 -125509901 + Tigger1 DNA MER2_type 2085 2418 0 2792 107 6 97 chr4 58778924 58779430 -125509232 - LTR46 LTR ERV1 0 460 1 234 250 0 0 chr4 58779841 58779913 -125508749 + (TA)n Simple_repeat Simple_repeat 1 72 0 235 296 111 0 chr4 58780407 58780515 -125508147 - MIR SINE MIR -74 188 69 326 267 127 7 chr4 58781080 58781230 -125507432 - L1MC/D LINE L1 -2135 5673 5506 257 264 78 30 chr4 58781238 58781405 -125507257 - L1MC/D LINE L1 -2342 5466 5292 448 284 86 25 chr4 58781797 58781959 -125506703 + MLT1G1 LTR MaLR 1 172 -423 250 25 25 25 chr4 58782233 58782273 -125506389 + (TTTTA)n Simple_repeat Simple_repeat 4 43 0 15257 44 4 0 chr4 58782273 58784913 -125503749 - L1PA3 LINE L1 -16 6139 3491 1296 159 186 0 chr4 58785018 58785240 -125503422 + MLT2D LTR ERVL 102 281 -133 378 0 0 0 chr4 58785240 58785282 -125503380 + (TC)n Simple_repeat Simple_repeat 1 42 0 207 0 0 0 chr4 58785281 58785304 -125503358 + (CA)n Simple_repeat Simple_repeat 1 23 0 * 1296 159 186 0 chr4 58785282 58785345 -125503317 + MLT2D LTR ERVL 281 414 0 244 345 90 21 chr4 58785703 58785848 -125502814 + L2 LINE L2 3159 3313 0 180 360 11 34 chr4 58786188 58786277 -125502385 + L2 LINE L2 3186 3272 0 583 105 12 0 chr4 58786282 58786368 -125502294 + L1M2 LINE L1 5681 5767 -533 527 348 63 7 chr4 58787526 58787813 -125500849 + L2 LINE L2 2108 2410 -904 207 263 69 119 chr4 58787882 58787928 -125500734 + L2 LINE L2 3158 3205 -108 729 234 69 64 chr4 58787928 58788146 -125500516 - MER20 DNA MER1_type 0 219 1 207 263 69 119 chr4 58788146 58788259 -125500403 + L2 LINE L2 3205 3309 -4 1470 204 3 7 chr4 58788688 58788977 -125499685 - AluJo SINE Alu -24 288 1 904 220 73 118 chr4 58789262 58789391 -125499271 + MLT1A1 LTR MaLR 1 134 -231 1712 136 60 46 chr4 58789391 58789758 -125498904 + THE1C LTR MaLR 1 372 -3 904 220 73 118 chr4 58789758 58790010 -125498652 + MLT1A1 LTR MaLR 134 365 0 3291 210 31 11 chr4 58790434 58791230 -125497432 + L1MB5 LINE L1 5363 6174 0 1865 188 58 8 chr4 58791398 58791760 -125496902 + MLT2B3 LTR ERVL 1 380 -174 826 292 118 33 chr4 58792360 58792757 -125495905 + LTR16A1 LTR ERVL 13 443 -14 24 0 0 0 chr4 58792963 58792987 -125495675 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 58793661 58793682 -125494980 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 58794953 58794982 -125493680 + AT_rich Low_complexity Low_complexity 1 29 0 612 253 18 52 chr4 58795021 58795250 -125493412 + L1 LINE L1 4527 4747 -1399 542 356 23 18 chr4 58795262 58795481 -125493181 + L1PA13 LINE L1 1 220 -6567 4420 294 56 27 chr4 58795510 58795851 -125492811 + L1PA13 LINE L1 1551 1880 -4917 867 139 0 29 chr4 58795851 58795988 -125492674 + FLAM_C SINE Alu 1 133 0 4420 294 56 27 chr4 58795988 58798578 -125490084 + L1PA13 LINE L1 1880 4606 -2191 2061 216 49 45 chr4 58798578 58799130 -125489532 + MLT2B3 LTR ERVL 1 554 0 4420 294 56 27 chr4 58799130 58799358 -125489304 + L1PA13 LINE L1 4606 4826 -1971 3843 155 28 65 chr4 58799375 58800285 -125488377 - L1MA5 LINE L1 -218 6082 5205 257 278 11 126 chr4 58800335 58800526 -125488136 - L1M2a LINE L1 -6355 813 645 * 3830 223 3 26 chr4 58800500 58801109 -125487553 - L1M2a LINE L1 -6254 914 179 2040 173 34 3 chr4 58801109 58801462 -125487200 - THE1B LTR MaLR 0 364 1 3830 223 3 26 chr4 58801462 58801633 -125487029 - L1M2a LINE L1 -6989 179 6 4316 185 41 21 chr4 58801635 58802507 -125486155 - L1M4c LINE L1 -5480 904 15 285 222 102 46 chr4 58803114 58803222 -125485440 - L2 LINE L2 -15 3298 3185 8814 150 22 24 chr4 58804045 58805591 -125483071 + L1PA14 LINE L1 12 1554 -4592 5518 147 32 0 chr4 58805577 58806995 -125481667 + L1PA14 LINE L1 4701 6161 0 * 3996 193 26 19 chr4 58807016 58807934 -125480728 - L1 LINE L1 -1460 4574 3650 882 184 0 0 chr4 58807934 58808075 -125480587 + AluJo SINE Alu 1 141 -171 45 34 0 0 chr4 58808090 58808149 -125480513 + AT_rich Low_complexity Low_complexity 1 59 0 1481 192 28 125 chr4 58808149 58808240 -125480422 - L1 LINE L1 -2372 3662 3564 752 183 24 12 chr4 58808240 58808409 -125480253 - L1MA10 LINE L1 -3 6331 6161 1481 192 28 125 chr4 58808409 58808951 -125479711 - L1 LINE L1 -2470 3564 3090 726 278 54 5 chr4 58808944 58809149 -125479513 - L1 LINE L1 -5739 216 2 * 400 320 9 27 chr4 58809291 58809510 -125479152 + MER58C DNA MER1_type 1 215 0 32 95 0 0 chr4 58809619 58809714 -125478948 + AT_rich Low_complexity Low_complexity 1 95 0 27 0 0 0 chr4 58809959 58809986 -125478676 + AT_rich Low_complexity Low_complexity 1 27 0 1880 125 21 14 chr4 58809986 58810274 -125478388 - AluSx SINE Alu -22 290 1 580 193 0 59 chr4 58810905 58811040 -125477622 - FLAM_A SINE Alu -10 132 6 30 27 0 0 chr4 58811040 58811077 -125477585 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr4 58811185 58811209 -125477453 + AT_rich Low_complexity Low_complexity 1 24 0 4080 241 45 30 chr4 58811932 58814388 -125474274 - L1MC1 LINE L1 0 6333 3842 2774 181 36 2 chr4 58814392 58814943 -125473719 - L1PA16 LINE L1 -5 6161 5592 4924 218 20 6 chr4 58814947 58816186 -125472476 + L1 LINE L1 4125 5381 -765 898 262 59 25 chr4 58816189 58816510 -125472152 - L1MC1 LINE L1 -2294 3852 3521 184 418 38 0 chr4 58816962 58817041 -125471621 - L2 LINE L2 -52 3220 3139 1383 198 0 4 chr4 58817659 58817922 -125470740 + L1MB2 LINE L1 5671 5932 -239 1109 167 26 13 chr4 58817990 58818217 -125470445 + L1MB2 LINE L1 5935 6164 -7 25 0 0 0 chr4 58818270 58818295 -125470367 + AT_rich Low_complexity Low_complexity 1 25 0 1910 159 3 10 chr4 58818375 58818670 -125469992 + AluSx SINE Alu 1 293 -19 253 130 0 37 chr4 58818677 58818731 -125469931 - L1MC4 LINE L1 -1339 6703 6652 1369 107 5 20 chr4 58818777 58819015 -125469647 - AluYa5 SINE Alu 0 322 88 4412 115 101 42 chr4 58819015 58819795 -125468867 - LTR12 LTR ERV1 0 826 1 42272 94 6 11 chr4 58819795 58828114 -125460548 - HERV9 LTR ERV1 0 8399 45 4541 89 62 129 chr4 58828138 58829023 -125459639 - LTR12 LTR ERV1 0 826 1 627 99 0 0 chr4 58829023 58829114 -125459548 - AluYa5 SINE Alu -220 91 1 21 71 0 0 chr4 58829330 58829372 -125459290 + AT_rich Low_complexity Low_complexity 1 42 0 1831 262 116 43 chr4 58829378 58830072 -125458590 + L1MCa LINE L1 30 825 -5601 1838 129 7 52 chr4 58830072 58830382 -125458280 - AluSq SINE Alu -17 296 1 1831 262 116 43 chr4 58830382 58830723 -125457939 + L1MCa LINE L1 825 1140 -5286 373 113 0 32 chr4 58830724 58830786 -125457876 + LTR8A LTR ERV1 1 60 -667 * 1315 191 101 83 chr4 58830781 58831179 -125457483 + LTR8A LTR ERV1 323 727 0 7818 160 89 74 chr4 58831269 58833391 -125455271 + L1MCa LINE L1 1 2310 -4116 3275 244 82 15 chr4 58833410 58834215 -125454447 + MLT1A1-int LTR MaLR 858 1716 -19 745 208 57 39 chr4 58834245 58834617 -125454045 + MLT1A1 LTR MaLR 26 365 0 483 189 131 74 chr4 58834655 58834683 -125453979 + MER76 LTR ERV 504 529 -159 2378 87 0 3 chr4 58834683 58834993 -125453669 + AluSx SINE Alu 1 309 -3 483 189 131 74 chr4 58834993 58835139 -125453523 + MER76 LTR ERV 529 688 0 3550 262 65 40 chr4 58835141 58835589 -125453073 + L1MCa LINE L1 2057 2492 -3934 1739 167 28 7 chr4 58835589 58835877 -125452785 - AluSx SINE Alu -18 294 1 3550 262 65 40 chr4 58835877 58836163 -125452499 + L1MCa LINE L1 2492 2769 -3657 1643 191 0 0 chr4 58836163 58836440 -125452222 + AluSx SINE Alu 15 291 -21 3550 262 65 40 chr4 58836440 58837067 -125451595 + L1MCa LINE L1 2769 3379 -3047 1963 129 61 28 chr4 58837067 58837430 -125451232 + THE1C LTR MaLR 1 375 0 8830 122 40 60 chr4 58837430 58839042 -125449620 + THE1C-int LTR MaLR 1 1580 0 1904 133 69 28 chr4 58839042 58839402 -125449260 + THE1C LTR MaLR 1 375 0 3550 262 65 40 chr4 58839402 58840187 -125448475 + L1MCa LINE L1 3378 4231 -2195 * 6186 204 29 67 chr4 58840180 58841938 -125446724 + L1MC3 LINE L1 6077 7768 -17 989 178 130 114 chr4 58842402 58842856 -125445806 + MER4C LTR ERV1 1 461 -4 3250 123 8 29 chr4 58842929 58843450 -125445212 + MER75 DNA T2_type 5 514 0 21 57 0 0 chr4 58843450 58843485 -125445177 + AT_rich Low_complexity Low_complexity 1 35 0 22 80 0 0 chr4 58843843 58843893 -125444769 + AT_rich Low_complexity Low_complexity 1 50 0 27 29 0 0 chr4 58843967 58844001 -125444661 + AT_rich Low_complexity Low_complexity 1 34 0 22 56 0 0 chr4 58844098 58844134 -125444528 + AT_rich Low_complexity Low_complexity 1 36 0 290 234 39 0 chr4 58844378 58844455 -125444207 - MIR SINE MIR -81 181 102 298 388 105 6 chr4 58844979 58845332 -125443330 + HERV16 LTR ERVL 985 1372 -3624 24 0 0 0 chr4 58845588 58845612 -125443050 + AT_rich Low_complexity Low_complexity 1 24 0 2509 42 7 3 chr4 58846123 58846431 -125442231 + AluY SINE Alu 3 311 0 25 0 0 0 chr4 58847313 58847338 -125441324 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr4 58847413 58847442 -125441220 + AT_rich Low_complexity Low_complexity 1 29 0 2977 256 94 14 chr4 58847471 58848144 -125440518 - L1M4 LINE L1 -2004 4142 3525 1847 211 56 50 chr4 58848144 58848646 -125440016 - MLT1D LTR MaLR 0 505 1 2977 256 94 14 chr4 58848646 58849295 -125439367 - L1M4 LINE L1 -2621 3525 2713 911 341 41 21 chr4 58849334 58849915 -125438747 + HERV16 LTR ERVL 2856 3448 -2037 26 0 0 0 chr4 58850153 58850179 -125438483 + AT_rich Low_complexity Low_complexity 1 26 0 388 282 38 100 chr4 58851055 58851374 -125437288 + L1M4 LINE L1 4738 5036 -1110 429 181 0 0 chr4 58851604 58851698 -125436964 + (CA)n Simple_repeat Simple_repeat 1 94 0 21 0 0 0 chr4 58851754 58851775 -125436887 + AT_rich Low_complexity Low_complexity 1 21 0 1968 146 0 3 chr4 58852350 58852645 -125436017 + AluSx SINE Alu 1 294 -18 304 300 0 0 chr4 58852681 58852771 -125435891 - LTR33 LTR ERVL -7 514 425 17642 27 1 0 chr4 58852771 58854882 -125433780 - L1P LINE L1 -1116 5030 2918 6613 97 1 9 chr4 58854881 58856049 -125432613 + L1PA3 LINE L1 4993 6150 -5 * 189 0 0 0 chr4 58857527 58857548 -125431114 + (TG)n Simple_repeat Simple_repeat 2 22 0 2796 82 5 0 chr4 58857548 58857936 -125430726 - L1PA13 LINE L1 -5 6158 5769 387 75 0 0 chr4 58858036 58858089 -125430573 - L1PA13 LINE L1 -396 5772 5720 24 0 0 0 chr4 58858367 58858391 -125430271 + AT_rich Low_complexity Low_complexity 1 24 0 185 396 42 31 chr4 58859832 58859928 -125428734 - L2 LINE L2 -177 3095 2999 206 298 199 0 chr4 58860226 58860357 -125428305 - L2 LINE L2 -667 2647 2491 2256 203 38 7 chr4 58860383 58860831 -125427831 + MLT1C LTR MaLR 1 462 -5 209 298 67 19 chr4 58860866 58860970 -125427692 - L2 LINE L2 -865 2449 2341 288 53 0 0 chr4 58861367 58861405 -125427257 + (CA)n Simple_repeat Simple_repeat 1 38 0 240 157 71 57 chr4 58862037 58862107 -125426555 - MLT1J2 LTR MaLR -8 442 372 1438 223 52 52 chr4 58863200 58863321 -125425341 - MLT1C LTR MaLR 0 467 347 2398 63 3 0 chr4 58863321 58863623 -125425039 + AluY SINE Alu 1 303 -8 1438 223 52 52 chr4 58863623 58863964 -125424698 - MLT1C LTR MaLR -119 348 5 452 309 184 9 chr4 58863972 58864500 -125424162 - HAL1 LINE L1 -413 2094 1475 209 316 18 0 chr4 58865827 58865884 -125422778 - L2 LINE L2 0 3313 3256 2264 104 6 3 chr4 58865906 58866241 -125422421 - L1MA3 LINE L1 -334 5971 5636 535 151 0 11 chr4 58866241 58866334 -125422328 - FRAM SINE Alu -8 168 77 6549 183 27 26 chr4 58866340 58868101 -125420561 - L1MA3 LINE L1 -532 5636 3919 921 153 58 0 chr4 58868101 58868291 -125420371 + L1P LINE L1 5138 5338 -808 1499 183 17 30 chr4 58868291 58868586 -125420076 - MER57A LTR ERV1 -112 291 1 1705 134 0 32 chr4 58868586 58868869 -125419793 - MER57A-int LTR ERV1 0 7537 7264 659 155 26 9 chr4 58868869 58868985 -125419677 - LTR54B LTR ERV1 -378 120 3 10009 130 10 4 chr4 58868985 58870839 -125417823 - MER57A-int LTR ERV1 -391 7146 5245 465 233 61 35 chr4 58870830 58871196 -125417466 - MER57A-int LTR ERV1 -2618 3328 1710 * 264 228 33 43 chr4 58871617 58871709 -125416953 - MER57A-int LTR ERV1 -4034 3503 3413 354 201 77 22 chr4 58871714 58871822 -125416840 - MER57A-int LTR ERV1 -3681 1190 1096 239 186 34 34 chr4 58872031 58872090 -125416572 - MER34C LTR ERV1 -369 216 158 3817 146 27 15 chr4 58872337 58873106 -125415556 - MER57A-int LTR ERV1 -6697 840 1 1863 184 67 0 chr4 58873107 58873483 -125415179 - MER57A LTR ERV1 -2 401 1 232 356 11 0 chr4 58873691 58873781 -125414881 + L2 LINE L2 2428 2518 -796 1214 174 94 149 chr4 58873810 58874416 -125414246 - LTR49 LTR ERV1 -32 563 5 516 336 180 38 chr4 58874416 58875116 -125413546 + L2 LINE L2 2532 3311 -2 21 82 0 0 chr4 58875965 58876014 -125412648 + AT_rich Low_complexity Low_complexity 1 49 0 338 333 66 62 chr4 58876552 58876825 -125411837 - L2 LINE L2 -438 2876 2603 1930 141 3 0 chr4 58877245 58877535 -125411127 - AluSx SINE Alu -18 294 4 28 0 0 0 chr4 58877757 58877785 -125410877 + AT_rich Low_complexity Low_complexity 1 28 0 1739 259 85 41 chr4 58878736 58879531 -125409131 - L1ME3 LINE L1 -105 6057 5238 267 232 0 14 chr4 58879543 58879612 -125409050 + (TA)n Simple_repeat Simple_repeat 2 69 0 274 293 85 33 chr4 58879733 58880003 -125408659 - L1ME3 LINE L1 -1082 5064 4781 761 289 105 30 chr4 58880081 58880576 -125408086 - L1ME3 LINE L1 -2105 4041 3510 8002 245 126 10 chr4 58880591 58881085 -125407577 - L1MA5 LINE L1 0 6300 5865 336 83 0 0 chr4 58881085 58881133 -125407529 + (TG)n Simple_repeat Simple_repeat 2 49 0 8002 245 126 10 chr4 58881133 58884154 -125404508 - L1MA5 LINE L1 -435 5865 2335 282 299 90 30 chr4 58884231 58884666 -125403996 - L1ME3 LINE L1 -2961 3185 2725 364 303 154 21 chr4 58884816 58885050 -125403612 - L1ME3 LINE L1 -3595 2551 2287 352 292 33 8 chr4 58885051 58885171 -125403491 - LTR16A LTR ERVL -285 165 43 768 163 17 6 chr4 58885549 58885721 -125402941 + CT-rich Low_complexity Low_complexity 3 176 0 7350 37 8 0 chr4 58886031 58887588 -125401074 + L1PA4 LINE L1 4592 6155 0 29 28 0 0 chr4 58887588 58887624 -125401038 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr4 58888741 58888762 -125399900 + AT_rich Low_complexity Low_complexity 1 21 0 2121 115 3 10 chr4 58888874 58889178 -125399484 + AluSg SINE Alu 1 302 -8 407 205 0 0 chr4 58889454 58889532 -125399130 - Charlie5 DNA MER1_type -298 2314 2237 313 256 60 51 chr4 58889545 58889662 -125399000 - Charlie5 DNA MER1_type -2494 118 1 2965 239 44 9 chr4 58889767 58890672 -125397990 + L1MC4a LINE L1 4536 5469 -709 1235 190 33 48 chr4 58890684 58891016 -125397646 + L1MB8 LINE L1 5851 6177 -1 2253 270 155 31 chr4 58891042 58892578 -125396084 - L1MC4a LINE L1 -19 6147 5982 27 0 0 0 chr4 58892586 58892613 -125396049 + AT_rich Low_complexity Low_complexity 1 27 0 889 242 83 66 chr4 58892622 58893031 -125395631 - L1MC4a LINE L1 -445 5721 5306 233 378 52 0 chr4 58893077 58893212 -125395450 + L1MC4a LINE L1 5505 5646 -2162 264 111 0 0 chr4 58893232 58893277 -125395385 + (CA)n Simple_repeat Simple_repeat 2 46 0 1706 156 51 18 chr4 58893375 58893651 -125395011 - AluSg SINE Alu -25 285 1 1219 219 57 83 chr4 58893729 58894420 -125394242 + MER52A LTR ERV1 553 716 -304 * 1834 238 101 39 chr4 58894398 58894911 -125393751 + MER52A LTR ERV1 1211 1755 0 315 244 0 0 chr4 58894912 58894990 -125393672 + L1MC4a LINE L1 5753 5830 -1978 319 293 168 55 chr4 58894996 58895051 -125393611 + L1MC4a LINE L1 5897 5944 -1864 2036 127 0 0 chr4 58895051 58895327 -125393335 + AluSc SINE Alu 17 292 -17 319 293 168 55 chr4 58895327 58895599 -125393063 + L1MC4a LINE L1 5944 6261 -1547 642 319 81 19 chr4 58895766 58896398 -125392264 + L1MC4 LINE L1 6414 7173 -869 421 294 28 39 chr4 58896409 58896589 -125392073 + L1MC4 LINE L1 7276 7453 -589 29 0 0 0 chr4 58896589 58896618 -125392044 + AT_rich Low_complexity Low_complexity 1 29 0 314 237 99 23 chr4 58896619 58896750 -125391912 + L1MC4 LINE L1 7446 7586 -456 1867 130 0 40 chr4 58896954 58897254 -125391408 + AluSx SINE Alu 1 288 -24 21 0 0 0 chr4 58897254 58897275 -125391387 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 58897744 58897765 -125390897 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 58898263 58898293 -125390369 + AT_rich Low_complexity Low_complexity 1 30 0 401 229 0 57 chr4 58899912 58900017 -125388645 + MER94 DNA DNA 36 134 0 2249 118 0 0 chr4 58901452 58901757 -125386905 - AluSg SINE Alu -5 305 1 4456 122 33 0 chr4 58901854 58902553 -125386109 + LTR30 LTR ERV1 1 722 0 2003 122 0 7 chr4 58902808 58903096 -125385566 + AluSg SINE Alu 4 289 -21 4906 124 34 5 chr4 58903900 58904658 -125384004 - LTR17 LTR ERV1 0 780 1 2255 82 0 0 chr4 58904658 58904950 -125383712 - HERV17 LTR ERV1 0 8626 8335 1062 56 7 7 chr4 58904943 58905085 -125383577 - HERV17 LTR ERV1 -1081 7545 7404 * 13159 62 8 2 chr4 58905055 58906720 -125381942 - HERV17 LTR ERV1 -4378 4248 2574 3798 53 2 6 chr4 58906714 58907184 -125381478 - HERV17 LTR ERV1 -6622 2004 1537 * 258 291 116 0 chr4 58907189 58907251 -125381411 + LTR8 LTR ERV1 158 234 -457 4978 88 28 6 chr4 58907251 58907957 -125380705 - LTR30 LTR ERV1 0 722 1 258 291 116 0 chr4 58907957 58907980 -125380682 + LTR8 LTR ERV1 234 253 -438 5394 83 46 2 chr4 58907982 58908894 -125379768 - Harlequin LTR ERV1 -5176 1720 724 5004 105 0 24 chr4 58909162 58909885 -125378777 - Harlequin LTR ERV1 -7917 709 4 4890 127 36 5 chr4 58909889 58910644 -125378018 - LTR17 LTR ERV1 -2 778 1 26 50 0 0 chr4 58910858 58910898 -125377764 + AT_rich Low_complexity Low_complexity 1 40 0 253 291 12 12 chr4 58912988 58913074 -125375588 + MER90 LTR ERV1 329 414 -200 1805 273 16 14 chr4 58913133 58913635 -125375027 + MLT1D LTR MaLR 1 503 -2 332 217 14 0 chr4 58913868 58913937 -125374725 - Tigger2 DNA MER2_type -2648 70 1 952 214 5 28 chr4 58914491 58914706 -125373956 - AluJb SINE Alu -17 295 86 1670 239 43 62 chr4 58914813 58915382 -125373280 + L1ME2 LINE L1 5285 5840 -324 1841 168 136 8 chr4 58915382 58915758 -125372904 + MSTA LTR MaLR 5 428 0 1670 239 43 62 chr4 58915758 58915884 -125372778 + L1ME2 LINE L1 5840 5967 -197 23 0 0 0 chr4 58916333 58916356 -125372306 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr4 58916419 58916448 -125372214 + AT_rich Low_complexity Low_complexity 1 29 0 23 86 0 0 chr4 58916694 58916752 -125371910 + AT_rich Low_complexity Low_complexity 1 58 0 1390 165 51 97 chr4 58918169 58918562 -125370100 - THE1C LTR MaLR 0 375 1 1585 138 80 47 chr4 58919233 58919594 -125369068 + L1MA5 LINE L1 5928 6300 0 22 35 0 0 chr4 58919737 58919766 -125368896 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 58919978 58920000 -125368662 + AT_rich Low_complexity Low_complexity 1 22 0 59 74 0 0 chr4 58920031 58920153 -125368509 + AT_rich Low_complexity Low_complexity 1 122 0 3442 132 62 0 chr4 58920741 58921308 -125367354 + LTR43 LTR ERV1 1 602 0 1323 311 112 27 chr4 58921871 58922688 -125365974 + L2 LINE L2 1289 2179 -1135 350 291 172 7 chr4 58922688 58922839 -125365823 - MER5B DNA MER1_type 0 178 3 242 330 0 21 chr4 58922973 58923070 -125365592 - MER5B DNA MER1_type -82 96 2 380 307 43 12 chr4 58923075 58923238 -125365424 + L2 LINE L2 2219 2386 -928 * 388 233 70 47 chr4 58923237 58923366 -125365296 - L2 LINE L2 -3 3310 3179 258 56 0 0 chr4 58923377 58923413 -125365249 + (CA)n Simple_repeat Simple_repeat 2 37 0 911 311 90 40 chr4 58923448 58924018 -125364644 + L2 LINE L2 2475 3074 -239 7000 129 14 11 chr4 58924027 58925994 -125362668 - L1PA10 LINE L1 -52 6116 4147 23 0 0 0 chr4 58926127 58926150 -125362512 + AT_rich Low_complexity Low_complexity 1 23 0 229 248 83 101 chr4 58926167 58926233 -125362429 + L2 LINE L2 3207 3272 -41 1420 195 30 36 chr4 58926233 58926536 -125362126 + AluJb SINE Alu 1 301 -11 229 248 83 101 chr4 58926536 58926578 -125362084 + L2 LINE L2 3272 3313 0 216 228 0 18 chr4 58926971 58927028 -125361634 + (TA)n Simple_repeat Simple_repeat 1 56 0 418 291 43 0 chr4 58927501 58927642 -125361020 - LTR16A LTR ERVL 0 450 304 380 179 9 0 chr4 58927928 58928008 -125360654 - L1MA4A LINE L1 -7 6293 6212 306 308 65 23 chr4 58928330 58928544 -125360118 - L1ME LINE L1 -629 5537 5315 983 325 75 20 chr4 58928788 58929298 -125359364 + MLT1H LTR MaLR 10 547 -2 738 295 101 62 chr4 58929509 58930142 -125358520 - L1ME LINE L1 -1302 4844 4187 385 320 97 41 chr4 58930240 58930581 -125358081 - L1ME LINE L1 -2106 4040 3681 262 208 0 0 chr4 58930754 58930802 -125357860 - FAM SINE Alu -12 167 120 2391 158 16 16 chr4 58931160 58931590 -125357072 - L1PA16 LINE L1 -9 6157 5728 501 276 54 5 chr4 58931810 58932013 -125356649 + L1MC5 LINE L1 7002 7214 -747 326 375 22 14 chr4 58932028 58932380 -125356282 + L1MC5 LINE L1 7286 7495 -475 21 0 0 0 chr4 58934449 58934470 -125354192 + AT_rich Low_complexity Low_complexity 1 21 0 346 311 114 42 chr4 58934605 58935151 -125353511 + L1MC4a LINE L1 5315 5899 -1909 21 0 0 0 chr4 58935404 58935425 -125353237 + AT_rich Low_complexity Low_complexity 1 21 0 1300 181 41 7 chr4 58935899 58936192 -125352470 - L1MA7 LINE L1 -6 6285 5983 6157 89 6 5 chr4 58936278 58937258 -125351404 - L1PA8A LINE L1 -29 6102 5123 * 8425 141 1 4 chr4 58937254 58938605 -125350057 + L1PA8A LINE L1 3780 5126 -1020 262 275 12 25 chr4 58938760 58938840 -125349822 + A-rich Low_complexity Low_complexity 5 83 0 718 292 76 8 chr4 58939300 58939536 -125349126 - MIR SINE MIR -8 254 3 8201 52 1 0 chr4 58939685 58940650 -125348012 - LTR5 LTR ERVK -3 966 1 4984 176 20 23 chr4 58941582 58942709 -125345953 + L1PA16 LINE L1 5051 6161 -5 2420 71 3 10 chr4 58942793 58943103 -125345559 + AluY SINE Alu 1 308 -3 2144 145 16 22 chr4 58944230 58944596 -125344066 - THE1B LTR MaLR 0 364 1 11395 103 3 2 chr4 58944596 58946174 -125342488 - THE1B-int LTR MaLR 0 1580 1 2140 140 22 22 chr4 58946174 58946538 -125342124 - THE1B LTR MaLR 0 364 1 180 0 0 0 chr4 58948541 58948561 -125340101 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 432 355 50 34 chr4 58948595 58949034 -125339628 + L2 LINE L2 1740 2185 -1129 284 345 43 29 chr4 58951163 58951302 -125337360 + MIR SINE MIR 67 207 -55 197 24 95 0 chr4 58951511 58951553 -125337109 + (TAA)n Simple_repeat Simple_repeat 3 48 0 273 57 0 0 chr4 58952195 58952230 -125336432 + (CA)n Simple_repeat Simple_repeat 2 36 0 23 33 0 0 chr4 58952553 58952583 -125336079 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 58952711 58952732 -125335930 + AT_rich Low_complexity Low_complexity 1 21 0 231 152 0 0 chr4 58952842 58952888 -125335774 + (ATGTG)n Simple_repeat Simple_repeat 2 47 0 330 302 84 50 chr4 58953375 58953577 -125335085 - MIR SINE MIR -2 260 52 188 209 251 107 chr4 58953761 58953948 -125334714 + MIR SINE MIR 31 244 -18 774 281 29 5 chr4 58954280 58954490 -125334172 - MIR SINE MIR -47 215 1 29 70 0 0 chr4 58954988 58955045 -125333617 + AT_rich Low_complexity Low_complexity 1 57 0 260 333 69 20 chr4 58956958 58957204 -125331458 + L1ME LINE L1 5516 5773 -348 1532 183 68 22 chr4 58958795 58959150 -125329512 + THE1C LTR MaLR 1 371 -4 225 0 0 0 chr4 58960059 58960084 -125328578 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr4 58960400 58960422 -125328240 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 58960433 58960455 -125328207 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr4 58960697 58960726 -125327936 + AT_rich Low_complexity Low_complexity 1 29 0 23 68 0 0 chr4 58960919 58960963 -125327699 + AT_rich Low_complexity Low_complexity 1 44 0 313 279 16 0 chr4 58961477 58961599 -125327063 + (TA)n Simple_repeat Simple_repeat 1 124 0 960 244 153 66 chr4 58961712 58962215 -125326447 + MLT1H1 LTR MaLR 7 553 -2 731 264 25 0 chr4 58962351 58962510 -125326152 - MER45A DNA AcHobo -11 167 5 927 205 124 5 chr4 58962652 58962862 -125325800 + Tigger3b DNA MER2_type 2 236 -995 741 152 119 99 chr4 58962910 58963153 -125325509 + MER2 DNA MER2_type 95 342 -3 4849 152 47 40 chr4 58963155 58964146 -125324516 + Tigger3b DNA MER2_type 233 1230 -1 341 314 59 65 chr4 58965671 58965840 -125322822 - MIR SINE MIR -91 171 4 254 365 77 45 chr4 58966202 58966358 -125322304 + L2 LINE L2 3111 3271 -1 * 768 303 24 122 chr4 58966340 58967222 -125321440 - L2 LINE L2 0 3313 2509 21 36 0 0 chr4 58967340 58967368 -125321294 + AT_rich Low_complexity Low_complexity 1 28 0 320 299 36 15 chr4 58969488 58969625 -125319037 + L1ME LINE L1 4078 4217 -1929 606 252 62 178 chr4 58969633 58970469 -125318193 - L2 LINE L2 -1150 2164 1426 35 0 0 0 chr4 58970703 58970738 -125317924 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr4 58970824 58970846 -125317816 + AT_rich Low_complexity Low_complexity 1 22 0 383 300 18 18 chr4 58971010 58971180 -125317482 + L1ME LINE L1 5601 5770 -351 313 176 12 12 chr4 58971345 58971430 -125317232 + GA-rich Low_complexity Low_complexity 2 86 0 30 0 0 0 chr4 58971548 58971578 -125317084 + AT_rich Low_complexity Low_complexity 1 30 0 255 61 0 0 chr4 58971673 58971706 -125316956 + (TG)n Simple_repeat Simple_repeat 2 34 0 419 155 0 48 chr4 58972709 58972793 -125315869 - MADE1 DNA Mariner 0 80 1 1155 90 6 6 chr4 58973008 58973174 -125315488 + L1PA8A LINE L1 5966 6131 0 26 30 0 0 chr4 58974244 58974277 -125314385 + AT_rich Low_complexity Low_complexity 1 33 0 49 18 0 0 chr4 58974400 58974456 -125314206 + AT_rich Low_complexity Low_complexity 1 56 0 325 352 182 11 chr4 58976480 58976744 -125311918 - MLT1J LTR MaLR -49 462 154 1332 256 31 22 chr4 58977360 58977720 -125310942 + MLT1A1 LTR MaLR 3 365 0 244 213 8 8 chr4 58978481 58978604 -125310058 + CT-rich Low_complexity Low_complexity 1 123 0 746 342 106 27 chr4 58978966 58979589 -125309073 - L2 LINE L2 -1135 2179 1508 381 234 108 70 chr4 58980520 58980612 -125308050 - L1MEd LINE L1 -5396 723 636 5746 121 26 13 chr4 58980612 58981593 -125307069 - L1PA15 LINE L1 -5 6160 5171 381 234 108 70 chr4 58981593 58981714 -125306948 - L1MEd LINE L1 -5483 636 502 4222 211 101 111 chr4 58982617 58984369 -125304293 - MER52A LTR ERV1 -20 1735 1 30 59 0 0 chr4 58984743 58984794 -125303868 + AT_rich Low_complexity Low_complexity 1 51 0 346 308 16 44 chr4 58984821 58984838 -125303824 + L1M4 LINE L1 3973 3989 -2157 2458 75 0 0 chr4 58984838 58985144 -125303518 + AluY SINE Alu 1 306 -5 346 308 16 44 chr4 58985144 58985308 -125303354 + L1M4 LINE L1 3989 4149 -1997 25 65 0 0 chr4 58985312 58985358 -125303304 + AT_rich Low_complexity Low_complexity 1 46 0 729 178 7 7 chr4 58986361 58986496 -125302166 - FLAM_C SINE Alu -8 135 1 338 273 78 92 chr4 58986497 58986779 -125301883 + L1MC4 LINE L1 7518 7795 -247 241 250 0 0 chr4 58986932 58986980 -125301682 + (TG)n Simple_repeat Simple_repeat 1 48 0 1567 261 174 8 chr4 58987366 58987884 -125300778 + MLT2F LTR ERVL 6 609 -54 213 132 0 0 chr4 58987884 58987922 -125300740 + (TAGA)n Simple_repeat Simple_repeat 3 40 0 260 211 0 0 chr4 58987940 58987992 -125300670 + MLT2F LTR ERVL 612 663 0 22 0 0 0 chr4 58988881 58988903 -125299759 + AT_rich Low_complexity Low_complexity 1 22 0 4014 180 39 58 chr4 58989313 58990160 -125298502 + L1MC1 LINE L1 5130 5994 -350 3485 75 0 0 chr4 58990160 58990612 -125298050 - L1PA8 LINE L1 -14 6158 5707 4014 180 39 58 chr4 58990612 58990957 -125297705 + L1MC1 LINE L1 5994 6344 0 344 347 49 21 chr4 58991337 58991481 -125297181 - L2 LINE L2 0 3272 3125 180 263 0 0 chr4 58991597 58991673 -125296989 + (TA)n Simple_repeat Simple_repeat 1 76 0 424 351 48 45 chr4 58991810 58992163 -125296499 - L2 LINE L2 -339 2975 2622 23 0 0 0 chr4 58992522 58992545 -125296117 + AT_rich Low_complexity Low_complexity 1 23 0 3705 161 28 68 chr4 58993027 58993841 -125294821 - L1PA15 LINE L1 0 6165 5384 1707 189 48 48 chr4 58993992 58994388 -125294274 - MSTD LTR MaLR 0 396 1 216 158 0 0 chr4 58994395 58994433 -125294229 + (CA)n Simple_repeat Simple_repeat 2 39 0 221 383 83 8 chr4 58995159 58995279 -125293383 + MIR3 SINE MIR 10 138 -70 484 306 63 24 chr4 58995438 58995853 -125292809 + MLT1L LTR MaLR 88 550 -65 22 35 0 0 chr4 58996708 58996737 -125291925 + AT_rich Low_complexity Low_complexity 1 29 0 3666 117 12 12 chr4 58997471 58998053 -125290609 + L1PA14 LINE L1 5580 6161 0 1918 246 78 17 chr4 58998989 58999830 -125288832 + L1M4 LINE L1 4639 5536 -648 289 194 0 0 chr4 58999824 58999886 -125288776 + L1MB8 LINE L1 6110 6171 -7 * 1207 232 116 52 chr4 58999892 59000357 -125288305 - L1MD3 LINE L1 -57 7938 7444 444 186 21 36 chr4 59000357 59000497 -125288165 + L1MB8 LINE L1 6039 6176 -2 22 0 0 0 chr4 59000515 59000537 -125288125 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 59000761 59000784 -125287878 + AT_rich Low_complexity Low_complexity 1 23 0 325 375 64 27 chr4 59001143 59001587 -125287075 - ERVL-B1 LTR ERVL -1735 3750 3295 437 365 29 0 chr4 59001640 59001878 -125286784 - ERVL-B1 LTR ERVL -2384 3101 2857 333 266 13 0 chr4 59001897 59001976 -125286686 - ERVL-B1 LTR ERVL -2580 3184 3105 1115 246 199 14 chr4 59002005 59002431 -125286231 + MLT1D LTR MaLR 1 505 0 12068 164 61 31 chr4 59002755 59003187 -125285475 - L1MA2 LINE L1 -76 7647 7229 399 41 0 0 chr4 59003187 59003236 -125285426 + (TG)n Simple_repeat Simple_repeat 2 50 0 12068 164 61 31 chr4 59003236 59005937 -125282725 - L1MA2 LINE L1 -494 7229 4374 1832 141 3 18 chr4 59005937 59006221 -125282441 - AluSx SINE Alu -11 301 22 12068 164 61 31 chr4 59006221 59006991 -125281671 - L1MA2 LINE L1 -3349 4374 3628 2219 262 210 0 chr4 59006999 59007633 -125281029 - L1MA2 LINE L1 -6292 1273 507 2123 124 50 19 chr4 59007635 59007997 -125280665 - THE1C LTR MaLR -2 373 1 745 330 77 41 chr4 59008066 59008858 -125279804 - ERVL-B1 LTR ERVL -2935 2719 1941 353 336 10 0 chr4 59009045 59009149 -125279513 - MIR SINE MIR -156 106 2 270 317 87 19 chr4 59009606 59009767 -125278895 - MIR SINE MIR -1 261 90 22 0 0 0 chr4 59011009 59011031 -125277631 + AT_rich Low_complexity Low_complexity 1 22 0 1569 188 3 7 chr4 59012280 59012562 -125276100 - AluJb SINE Alu -31 281 1 251 719 0 0 chr4 59012580 59012719 -125275943 + A-rich Low_complexity Low_complexity 1 139 0 546 167 8 63 chr4 59012885 59013011 -125275651 - MER3 DNA MER1_type 0 209 91 2269 248 49 4 chr4 59013011 59013648 -125275014 - ERVL-B1 LTR ERVL -4994 660 1 329 175 0 0 chr4 59013648 59013705 -125274957 - MLT2B1 LTR ERVL 0 464 408 185 136 61 0 chr4 59013801 59013867 -125274795 + (TA)n Simple_repeat Simple_repeat 1 70 0 1669 211 66 52 chr4 59013902 59014173 -125274489 - MLT2B1 LTR ERVL -71 449 168 1898 146 7 0 chr4 59014173 59014474 -125274188 - AluSx SINE Alu -9 303 1 1669 211 66 52 chr4 59014474 59014643 -125274019 - MLT2B1 LTR ERVL -352 168 3 444 246 9 0 chr4 59014643 59014757 -125273905 - MER3 DNA MER1_type -93 116 2 2260 91 3 0 chr4 59015065 59015361 -125273301 + AluSp SINE Alu 1 297 -16 217 298 18 0 chr4 59015395 59015452 -125273210 + L3 LINE CR1 470 527 -1050 296 281 79 0 chr4 59015515 59015604 -125273058 - MIR SINE MIR -101 161 66 22 0 0 0 chr4 59016065 59016087 -125272575 + AT_rich Low_complexity Low_complexity 1 22 0 35 24 0 0 chr4 59016740 59016782 -125271880 + AT_rich Low_complexity Low_complexity 1 42 0 31 26 0 0 chr4 59017057 59017095 -125271567 + AT_rich Low_complexity Low_complexity 1 38 0 2246 71 3 3 chr4 59017095 59017378 -125271284 - AluY SINE Alu -18 293 11 899 233 27 4 chr4 59017858 59018120 -125270542 + L1MA4 LINE L1 6027 6294 -6 268 343 100 0 chr4 59018813 59018953 -125269709 - MIR SINE MIR -30 232 79 23 54 0 0 chr4 59019127 59019164 -125269498 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr4 59019860 59019881 -125268781 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr4 59020157 59020194 -125268468 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr4 59020244 59020265 -125268397 + AT_rich Low_complexity Low_complexity 1 21 0 2398 183 83 2 chr4 59022010 59022517 -125266145 + L1MB2 LINE L1 5616 6163 -8 1976 135 17 0 chr4 59022935 59023231 -125265431 + AluY SINE Alu 1 301 -10 799 154 7 0 chr4 59023250 59023393 -125265269 + L1MA4 LINE L1 6151 6294 -6 2045 152 126 3 chr4 59023414 59023795 -125264867 - MSTA LTR MaLR 0 428 1 26 50 0 0 chr4 59024735 59024775 -125263887 + AT_rich Low_complexity Low_complexity 1 40 0 425 101 0 14 chr4 59024952 59025021 -125263641 + (TTCC)n Simple_repeat Simple_repeat 1 68 0 1656 157 48 3 chr4 59025021 59025315 -125263347 - AluJb SINE Alu -5 307 1 2085 128 7 0 chr4 59025544 59025849 -125262813 - AluSc SINE Alu -2 307 1 325 0 0 0 chr4 59026020 59026056 -125262606 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1958 121 4 7 chr4 59026056 59026337 -125262325 - AluSc SINE Alu -1 315 1 676 103 51 0 chr4 59026349 59026505 -125262157 + (TA)n Simple_repeat Simple_repeat 1 164 0 198 143 0 0 chr4 59027204 59027239 -125261423 + (T)n Simple_repeat Simple_repeat 1 35 0 796 313 62 11 chr4 59027316 59027591 -125261071 + LTR16C LTR ERVL 199 487 -4 301 277 143 61 chr4 59027985 59028043 -125260619 - LTR33 LTR ERVL 0 521 469 2124 85 10 3 chr4 59028043 59028338 -125260324 + AluY SINE Alu 1 297 -14 301 277 143 61 chr4 59028338 59028622 -125260040 - LTR33 LTR ERVL -52 469 151 22 56 0 0 chr4 59029088 59029124 -125259538 + AT_rich Low_complexity Low_complexity 1 36 0 1446 134 47 7 chr4 59029894 59030170 -125258492 + L1MA8 LINE L1 6001 6287 -4 27 0 0 0 chr4 59030762 59030789 -125257873 + AT_rich Low_complexity Low_complexity 1 27 0 354 45 0 0 chr4 59031462 59031506 -125257156 + (TA)n Simple_repeat Simple_repeat 2 45 0 186 171 0 0 chr4 59032315 59032356 -125256306 + (TA)n Simple_repeat Simple_repeat 2 42 0 330 26 0 0 chr4 59032749 59032788 -125255874 + (CA)n Simple_repeat Simple_repeat 2 40 0 1480 217 52 6 chr4 59032788 59033133 -125255529 + MLT1A1 LTR MaLR 2 362 -3 324 48 0 0 chr4 59033133 59033175 -125255487 + (CA)n Simple_repeat Simple_repeat 2 43 0 2323 131 14 3 chr4 59035114 59035472 -125253190 + THE1B LTR MaLR 3 364 0 5629 89 11 10 chr4 59035596 59036404 -125252258 + L1PA13 LINE L1 5352 6160 -3 216 100 40 60 chr4 59036411 59036461 -125252201 + A-rich Low_complexity Low_complexity 4 52 0 1222 232 47 52 chr4 59036941 59037436 -125251226 - Charlie4a DNA MER1_type -15 493 2 1048 214 49 106 chr4 59038990 59039377 -125249285 + MLT1A1 LTR MaLR 1 365 0 767 362 17 6 chr4 59039434 59039796 -125248866 + LTR16A LTR ERVL 35 400 -50 279 279 114 60 chr4 59040181 59040382 -125248280 - MIR SINE MIR -4 258 47 2178 109 0 3 chr4 59040754 59041048 -125247614 + AluSq SINE Alu 3 295 -18 529 305 84 0 chr4 59041050 59041253 -125247409 - MIR SINE MIR -1 261 42 587 314 138 44 chr4 59043226 59044020 -125244642 - L2 LINE L2 -747 2567 1699 1433 319 58 31 chr4 59045537 59045802 -125242860 + ERVL LTR ERVL 1453 1709 -4055 2243 138 44 64 chr4 59045802 59046237 -125242425 - MSTA LTR MaLR 0 428 3 1433 319 58 31 chr4 59046237 59046426 -125242236 + ERVL LTR ERVL 1709 1891 -3873 2075 148 0 0 chr4 59046426 59046730 -125241932 + AluSx SINE Alu 1 304 -8 1433 319 58 31 chr4 59046730 59047784 -125240878 + ERVL LTR ERVL 1891 3088 -2676 690 232 14 7 chr4 59047917 59048055 -125240607 + ERVL LTR ERVL 3346 3484 -2280 241 115 66 0 chr4 59149681 59149742 -125138920 + L1MA7 LINE L1 6226 6290 -1 21 0 0 0 chr4 59149742 59149763 -125138899 + AT_rich Low_complexity Low_complexity 1 21 0 212 250 0 18 chr4 59150117 59150173 -125138489 + CT-rich Low_complexity Low_complexity 2 56 0 222 322 7 77 chr4 59150348 59150530 -125138132 + MIR SINE MIR 37 206 -56 1503 216 121 12 chr4 59151716 59152137 -125136525 - MLT1C LTR MaLR 0 467 1 273 151 0 0 chr4 59152175 59152228 -125136434 + T-rich Low_complexity Low_complexity 1 53 0 246 299 0 35 chr4 59152663 59152750 -125135912 + MLT1H LTR MaLR 453 536 -13 494 229 10 0 chr4 59153353 59153449 -125135213 - MER44D DNA MER2_type -5 600 504 1514 131 44 69 chr4 59153457 59153970 -125134692 + MER4A LTR ERV1 1 568 -96 347 47 0 0 chr4 59154070 59154113 -125134549 + MER4B LTR ERV1 568 610 0 1272 195 34 4 chr4 59154114 59154370 -125134292 - MER44D DNA MER2_type -106 499 181 481 202 0 39 chr4 59154370 59154474 -125134188 + MSTA LTR MaLR 1 100 -328 6179 146 29 14 chr4 59154474 59155506 -125133156 + THE1C-int LTR MaLR 527 1574 -6 821 169 74 17 chr4 59155511 59155706 -125132956 + THE1C LTR MaLR 1 205 -159 301 68 0 34 chr4 59155718 59155777 -125132885 + (TA)n Simple_repeat Simple_repeat 2 58 0 281 51 0 26 chr4 59155779 59155818 -125132844 + MLT2A2 LTR ERVL 416 453 0 1232 226 10 10 chr4 59155850 59156146 -125132516 - Charlie1a DNA MER1_type -1088 367 72 369 0 0 0 chr4 59156433 59156474 -125132188 + (CA)n Simple_repeat Simple_repeat 2 42 0 2589 89 25 45 chr4 59156474 59156877 -125131785 - MLT2A1 LTR ERVL -49 395 1 2663 229 50 16 chr4 59156932 59157639 -125131023 + Charlie1a DNA MER1_type 423 1153 -302 1267 218 15 85 chr4 59157640 59157970 -125130692 - MLT1A1 LTR MaLR -4 361 55 22 35 0 0 chr4 59158531 59158560 -125130102 + AT_rich Low_complexity Low_complexity 1 29 0 540 223 50 58 chr4 59159484 59159860 -125128802 + L1ME2 LINE L1 644 1016 -5054 231 319 47 34 chr4 59159955 59160190 -125128472 + L1ME2 LINE L1 1060 1297 -4785 231 196 36 0 chr4 59160191 59160247 -125128415 + (TA)n Simple_repeat Simple_repeat 2 59 0 381 303 91 34 chr4 59160248 59160512 -125128150 + L1ME2 LINE L1 1440 1718 -4362 198 0 0 0 chr4 59160533 59160555 -125128107 + (TTATA)n Simple_repeat Simple_repeat 1 22 0 250 233 99 23 chr4 59160639 59160811 -125127851 + L1ME2 LINE L1 1845 2029 -4051 21 0 0 0 chr4 59160834 59160855 -125127807 + AT_rich Low_complexity Low_complexity 1 21 0 835 271 72 0 chr4 59160867 59161681 -125126981 + L1ME2 LINE L1 2109 3071 -3009 24 0 0 0 chr4 59161756 59161780 -125126882 + AT_rich Low_complexity Low_complexity 1 24 0 2589 221 37 5 chr4 59161838 59162407 -125126255 - MER82 DNA MER2_type -6 647 61 2401 265 104 17 chr4 59162676 59163848 -125124814 + L1ME2 LINE L1 3755 5028 -1052 435 176 28 21 chr4 59163900 59164042 -125124620 + GA-rich Low_complexity Low_complexity 3 145 0 1065 278 76 49 chr4 59164044 59165002 -125123660 + L1ME2 LINE L1 5109 6089 -9 246 351 72 0 chr4 59165086 59165197 -125123465 - MIR SINE MIR -96 166 48 24 67 0 0 chr4 59166092 59166137 -125122525 + AT_rich Low_complexity Low_complexity 1 45 0 1251 298 105 28 chr4 59166274 59166922 -125121740 + L2 LINE L2 1355 2052 -1262 256 348 0 0 chr4 59166926 59167018 -125121644 + L2 LINE L2 3222 3313 0 2514 30 3 7 chr4 59167204 59167502 -125121160 - AluY SINE Alu -14 297 1 32156 111 8 56 chr4 59167562 59173493 -125115169 + L1PA7 LINE L1 12 5646 -508 238 96 106 0 chr4 59173493 59173597 -125115065 + (TA)n Simple_repeat Simple_repeat 1 115 0 3610 74 4 57 chr4 59173603 59174144 -125114518 + L1PA7 LINE L1 5642 6153 -1 21 0 0 0 chr4 59174643 59174664 -125113998 + AT_rich Low_complexity Low_complexity 1 21 0 273 151 0 0 chr4 59175162 59175215 -125113447 + (TG)n Simple_repeat Simple_repeat 2 54 0 322 316 2 0 chr4 59175669 59175766 -125112896 - MIR SINE MIR -64 144 53 1297 244 37 54 chr4 59175903 59176367 -125112295 - MLT2C2 LTR ERVL -8 456 1 200 290 58 29 chr4 59178582 59178651 -125110011 - L2 LINE L2 -48 3224 3154 915 211 28 0 chr4 59178791 59178971 -125109691 - MER20 DNA MER1_type 0 219 35 237 284 152 27 chr4 59179452 59179623 -125109039 + MIR3 SINE MIR 2 195 -13 690 106 0 0 chr4 59180199 59180303 -125108359 - L1MA10 LINE L1 0 6334 6231 2172 205 85 18 chr4 59180350 59180858 -125107804 + MER34 LTR ERV1 1 542 0 3744 281 39 48 chr4 59180923 59181898 -125106764 + L1PBa LINE L1 3 871 -5992 842 78 86 0 chr4 59181898 59182026 -125106636 + MER85 DNA T2_type 1 139 0 3744 281 39 48 chr4 59182026 59182794 -125105868 + L1PBa LINE L1 871 1644 -5219 * 3857 230 34 9 chr4 59182789 59183871 -125104791 + L1 LINE L1 2569 3677 -2469 3859 189 98 2 chr4 59183973 59185148 -125103514 + L1P5 LINE L1 4253 5552 -602 3854 67 10 14 chr4 59185248 59185755 -125102907 - PABL_A LTR ERV1 -155 505 1 21 0 0 0 chr4 59186033 59186054 -125102608 + AT_rich Low_complexity Low_complexity 1 21 0 384 312 162 50 chr4 59186072 59186547 -125102115 + MLT1H LTR MaLR 7 534 -15 381 354 23 47 chr4 59186570 59186661 -125102001 + MIR SINE MIR 37 129 -133 1874 101 87 7 chr4 59186661 59186937 -125101725 + AluSq SINE Alu 1 298 -15 381 354 23 47 chr4 59186937 59187060 -125101602 + MIR SINE MIR 129 246 -16 474 391 21 5 chr4 59187116 59187308 -125101354 + MER91A DNA MER1_type 2 196 0 439 328 68 0 chr4 59188009 59188201 -125100461 - L2 LINE L2 0 3313 3109 1034 303 65 45 chr4 59188410 59188875 -125099787 - LTR67 LTR ERVL -44 513 40 2381 119 36 8 chr4 59188917 59189304 -125099358 + MER48 LTR ERV1 1 398 0 356 242 33 22 chr4 59189304 59189395 -125099267 - MLT1I LTR MaLR -37 372 281 1264 214 76 34 chr4 59189939 59190294 -125098368 - MER39 LTR ERV1 0 707 338 313 261 27 18 chr4 59190478 59190589 -125098073 - MLT1I LTR MaLR -20 389 278 295 377 71 22 chr4 59190890 59191158 -125097504 - L2 LINE L2 -1129 2185 1905 242 306 122 37 chr4 59191717 59191988 -125096674 + MLT1J LTR MaLR 177 470 -41 1398 235 13 15 chr4 59192375 59192727 -125095935 - MLT1A1 LTR MaLR 0 365 41 7549 222 48 23 chr4 59193895 59197437 -125091225 - L1MC1 LINE L1 -34 6579 2946 4651 163 99 36 chr4 59197430 59197502 -125091160 - L1MC1 LINE L1 -4430 1996 1930 * 1948 155 7 3 chr4 59197502 59197811 -125090851 - AluSx SINE Alu -2 310 1 4651 163 99 36 chr4 59197811 59197874 -125090788 - L1MC1 LINE L1 -4496 1930 1872 1532 246 17 11 chr4 59197874 59198236 -125090426 + MLT1A1 LTR MaLR 2 365 0 4651 163 99 36 chr4 59198236 59199832 -125088830 - L1MC1 LINE L1 -4554 1872 29 22 35 0 0 chr4 59200315 59200344 -125088318 + AT_rich Low_complexity Low_complexity 1 29 0 999 375 47 19 chr4 59200436 59200759 -125087903 - L2 LINE L2 -1652 1662 1349 1621 164 46 26 chr4 59200759 59201063 -125087599 + AluJo SINE Alu 1 310 -2 999 375 47 19 chr4 59201063 59201461 -125087201 - L2 LINE L2 -1965 1349 921 2554 309 112 40 chr4 59201488 59202114 -125086548 + L2 LINE L2 1334 1913 -1401 2005 180 78 2 chr4 59202114 59202509 -125086153 + MSTB LTR MaLR 2 426 0 2554 309 112 40 chr4 59202509 59202838 -125085824 + L2 LINE L2 1913 2217 -1097 2039 114 51 42 chr4 59202838 59203172 -125085490 - MER1B DNA MER1_type 0 337 1 2554 309 112 40 chr4 59203172 59203621 -125085041 + L2 LINE L2 2217 2841 -473 1723 181 3 3 chr4 59203950 59204238 -125084424 + AluJb SINE Alu 1 288 -24 27 0 0 0 chr4 59204239 59204266 -125084396 + AT_rich Low_complexity Low_complexity 1 27 0 300 250 107 0 chr4 59204266 59204350 -125084312 - L1MC4 LINE L1 -1339 6703 6611 218 184 69 0 chr4 59204352 59204439 -125084223 + (TA)n Simple_repeat Simple_repeat 2 94 0 189 289 60 36 chr4 59204439 59204522 -125084140 + L2 LINE L2 1659 1743 -1571 233 335 96 34 chr4 59204789 59205028 -125083634 + L2 LINE L2 1699 1952 -1362 387 83 0 0 chr4 59205028 59205088 -125083574 + (TTCC)n Simple_repeat Simple_repeat 3 62 0 22 0 0 0 chr4 59205662 59205684 -125082978 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr4 59206097 59206121 -125082541 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr4 59206437 59206458 -125082204 + AT_rich Low_complexity Low_complexity 1 21 0 4126 65 86 0 chr4 59206627 59207185 -125081477 - L1PA5 LINE L1 0 6154 5549 4882 139 62 13 chr4 59207302 59208156 -125080506 + MER4D LTR ERV1 4 899 -4 721 236 151 25 chr4 59208377 59208695 -125079967 - MER93b LTR ERV1 -2 371 14 4194 83 40 4 chr4 59209145 59209702 -125078960 + LTR17 LTR ERV1 204 780 0 708 157 41 0 chr4 59209708 59209829 -125078833 + AluJb SINE Alu 161 286 -26 725 257 33 13 chr4 59209879 59210093 -125078569 + MSTD LTR MaLR 215 430 -2 2338 113 14 8 chr4 59210207 59210560 -125078102 - THE1A LTR MaLR 0 355 1 10917 118 9 1 chr4 59210560 59212127 -125076535 - THE1A-int LTR MaLR 0 1580 1 2131 141 11 8 chr4 59212127 59212481 -125076181 - THE1A LTR MaLR 0 355 1 5599 83 32 3 chr4 59213426 59214183 -125074479 - LTR17 LTR ERV1 -1 779 1 970 222 76 60 chr4 59214488 59214918 -125073744 + MER39 LTR ERV1 67 707 0 189 196 0 0 chr4 59215552 59215598 -125073064 + GA-rich Low_complexity Low_complexity 3 48 0 36 0 0 0 chr4 59215954 59215990 -125072672 + AT_rich Low_complexity Low_complexity 1 36 0 602 315 119 40 chr4 59217611 59218014 -125070648 + MLT2E LTR ERVL 187 621 -7 404 295 121 0 chr4 59218083 59218249 -125070413 + MLT1H LTR MaLR 100 285 -264 453 204 126 58 chr4 59218283 59218474 -125070188 + MLT1H LTR MaLR 346 549 0 576 335 15 20 chr4 59218806 59219009 -125069653 + ERVL LTR ERVL 4096 4297 -1467 365 294 0 0 chr4 59219019 59219111 -125069551 + MER81 DNA DNA 1 92 -22 603 383 30 22 chr4 59219253 59219655 -125069007 + ERVL LTR ERVL 4462 4866 -898 184 323 62 0 chr4 59220402 59220467 -125068195 + L2 LINE L2 3245 3313 0 294 379 106 1 chr4 59220648 59220854 -125067808 + MIR SINE MIR 38 262 0 355 64 0 0 chr4 59221139 59221186 -125067476 + Alu SINE Alu 2 48 -253 457 65 0 0 chr4 59221187 59221249 -125067413 + Alu SINE Alu 232 293 -16 240 111 0 0 chr4 59221324 59221360 -125067302 + (T)n Simple_repeat Simple_repeat 1 36 0 1084 169 93 119 chr4 59221388 59221850 -125066812 - LTR7 LTR ERV1 0 450 1 485 239 161 85 chr4 59221951 59222399 -125066263 + MER34C LTR ERV1 40 521 -64 350 64 0 0 chr4 59222368 59222415 -125066247 + MER34 LTR ERV1 447 493 -49 * 1418 201 147 7 chr4 59222468 59222865 -125065797 - MER89 LTR ERV1 -2 557 2 22 35 0 0 chr4 59222950 59222979 -125065683 + AT_rich Low_complexity Low_complexity 1 29 0 2128 101 6 55 chr4 59223002 59223330 -125065332 - AluSx SINE Alu 0 312 1 2264 148 38 64 chr4 59223531 59224030 -125064632 + LTR19A LTR ERV1 1 486 0 28 79 0 0 chr4 59224205 59224268 -125064394 + AT_rich Low_complexity Low_complexity 1 63 0 21 0 0 0 chr4 59224647 59224668 -125063994 + AT_rich Low_complexity Low_complexity 1 21 0 330 253 288 51 chr4 59225907 59226199 -125062463 + Charlie8 DNA MER1_type 86 446 -1971 523 211 0 19 chr4 59226313 59226417 -125062245 + FLAM_C SINE Alu 9 110 -33 438 102 10 41 chr4 59226417 59226515 -125062147 + (TAAA)n Simple_repeat Simple_repeat 3 97 0 1137 156 6 0 chr4 59226515 59226694 -125061968 + AluJb SINE Alu 130 309 -3 3209 106 37 4 chr4 59226696 59227186 -125061476 - Tigger4(Zombi) DNA MER2_type -4 2727 2222 1047 139 0 6 chr4 59227184 59227342 -125061320 - Tigger4(Zombi) DNA MER2_type -2571 160 4 * 219 248 34 86 chr4 59227384 59227501 -125061161 - L2 LINE L2 -31 3282 3172 461 348 78 30 chr4 59227684 59228224 -125060438 + L2 LINE L2 188 753 -2561 723 111 17 0 chr4 59228513 59228630 -125060032 + Tigger4(Zombi) DNA MER2_type 2547 2665 -66 373 361 83 35 chr4 59228635 59228970 -125059692 + L2 LINE L2 986 1348 -1966 1887 159 7 0 chr4 59228970 59229266 -125059396 - AluSx SINE Alu -12 300 3 373 361 83 35 chr4 59229266 59229362 -125059300 + L2 LINE L2 1348 1438 -1876 673 280 35 35 chr4 59229362 59229619 -125059043 + MLT1J LTR MaLR 5 261 -250 216 0 0 0 chr4 59229619 59229643 -125059019 + (T)n Simple_repeat Simple_repeat 1 24 0 288 263 40 0 chr4 59230119 59230195 -125058467 + MIR SINE MIR 116 194 -68 593 286 59 44 chr4 59230230 59230707 -125057955 + LTR33A LTR ERVL 7 523 0 189 107 0 0 chr4 59230710 59230738 -125057924 + (CAT)n Simple_repeat Simple_repeat 2 29 0 243 0 0 0 chr4 59230867 59230894 -125057768 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 21 82 0 0 chr4 59231578 59231627 -125057035 + AT_rich Low_complexity Low_complexity 1 49 0 2194 102 24 0 chr4 59231785 59232079 -125056583 + AluSp SINE Alu 1 301 -12 246 164 0 0 chr4 59232079 59232134 -125056528 + (TA)n Simple_repeat Simple_repeat 1 55 0 201 233 0 0 chr4 59233597 59233640 -125055022 + CT-rich Low_complexity Low_complexity 4 46 0 21 57 0 0 chr4 59234269 59234304 -125054358 + AT_rich Low_complexity Low_complexity 1 35 0 287 150 17 0 chr4 59235517 59235577 -125053085 + CT-rich Low_complexity Low_complexity 3 63 0 1270 194 39 39 chr4 59237309 59237619 -125051043 + AluJo SINE Alu 1 310 -2 26 30 0 0 chr4 59237677 59237710 -125050952 + AT_rich Low_complexity Low_complexity 1 33 0 1124 146 0 0 chr4 59239440 59239611 -125049051 + AluSg/x SINE Alu 128 298 -12 842 316 96 80 chr4 59239739 59240679 -125047983 - L2 LINE L2 -481 2833 1879 22 56 0 0 chr4 59240764 59240800 -125047862 + AT_rich Low_complexity Low_complexity 1 36 0 1803 127 40 4 chr4 59240944 59241220 -125047442 - THE1B LTR MaLR -78 286 1 10017 97 36 47 chr4 59241225 59242818 -125045844 - THE1B-int LTR MaLR -5 1575 1 1756 134 30 4 chr4 59242832 59243094 -125045568 - THE1B LTR MaLR -78 286 18 21 71 0 0 chr4 59243319 59243361 -125045301 + AT_rich Low_complexity Low_complexity 1 42 0 1614 228 8 0 chr4 59243487 59243847 -125044815 - MLT1A1 LTR MaLR 0 365 3 4552 112 94 97 chr4 59243848 59245267 -125043395 + pTR5 LTR ERV1 66 2438 0 21 36 0 0 chr4 59245349 59245377 -125043285 + AT_rich Low_complexity Low_complexity 1 28 0 216 182 45 0 chr4 59245894 59245938 -125042724 + GA-rich Low_complexity Low_complexity 3 48 0 26 93 0 0 chr4 59247289 59247364 -125041298 + AT_rich Low_complexity Low_complexity 1 75 0 523 253 82 70 chr4 59247384 59247542 -125041120 + MLT1E LTR MaLR 1 160 -433 1481 243 76 51 chr4 59247543 59248200 -125040462 - LTR68 LTR ERV1 0 740 1 3679 153 26 2 chr4 59248255 59248875 -125039787 + MER41B LTR ERV1 1 635 0 889 238 145 18 chr4 59248875 59249188 -125039474 + MLT1E LTR MaLR 290 593 0 25 0 0 0 chr4 59249415 59249440 -125039222 + AT_rich Low_complexity Low_complexity 1 25 0 22 80 0 0 chr4 59250294 59250344 -125038318 + AT_rich Low_complexity Low_complexity 1 50 0 2525 55 0 3 chr4 59250557 59250869 -125037793 - AluY SINE Alu 0 311 1 891 203 6 0 chr4 59251214 59251372 -125037290 + AluJb SINE Alu 136 294 -18 307 307 0 55 chr4 59251410 59251537 -125037125 - L2 LINE L2 -820 2494 2375 1069 293 147 25 chr4 59251549 59252079 -125036583 + MLT1G1 LTR MaLR 1 595 0 266 333 139 6 chr4 59252153 59252333 -125036329 - L2 LINE L2 -949 2365 2162 673 214 69 35 chr4 59253554 59253828 -125034834 + LTR43 LTR ERV1 174 615 -64 184 323 39 71 chr4 59255508 59255635 -125033027 + MIR SINE MIR 2 124 -138 * 273 372 31 40 chr4 59255622 59255845 -125032817 + L2 LINE L2 2422 2642 -672 338 266 125 102 chr4 59255848 59256153 -125032509 + MLT1H LTR MaLR 1 312 -237 326 207 15 71 chr4 59256199 59256309 -125032353 + MLT1F LTR MaLR 449 540 -2 29 28 0 0 chr4 59256631 59256667 -125031995 + AT_rich Low_complexity Low_complexity 1 36 0 194 345 0 23 chr4 59257331 59257418 -125031244 + MIR3 SINE MIR 2 86 -122 203 103 26 0 chr4 59258796 59258835 -125029827 + A-rich Low_complexity Low_complexity 2 41 0 507 272 39 8 chr4 59259640 59259895 -125028767 + L1MCc LINE L1 18 402 -6021 2219 257 29 60 chr4 59260467 59260892 -125027770 + L1MCc LINE L1 691 1077 -5346 1120 229 130 83 chr4 59260892 59261338 -125027324 + MLT1C LTR MaLR 1 467 0 2219 257 29 60 chr4 59261338 59261785 -125026877 + L1MCc LINE L1 1077 1536 -4887 749 165 8 0 chr4 59261820 59261941 -125026721 + AluJo SINE Alu 13 134 -178 373 311 73 12 chr4 59261941 59262079 -125026583 + L1MCc LINE L1 1737 1888 -5234 1823 191 21 0 chr4 59262079 59262419 -125026243 - MER7A DNA MER2_type 0 346 2 373 311 73 12 chr4 59262419 59262444 -125026218 + L1MCc LINE L1 1888 1910 -5212 225 296 53 26 chr4 59262458 59262610 -125026052 + L1MCc LINE L1 1750 1905 -4934 762 200 0 12 chr4 59262617 59262777 -125025885 + FRAM SINE Alu 19 176 0 328 209 121 30 chr4 59262778 59262911 -125025751 + L1MCc LINE L1 1866 2051 -4892 273 98 0 0 chr4 59262912 59262953 -125025709 + (GGGA)n Simple_repeat Simple_repeat 2 42 0 1832 259 52 30 chr4 59262967 59263801 -125024861 + L1MCc LINE L1 3457 4308 -2633 198 0 0 0 chr4 59263915 59263937 -125024725 + (A)n Simple_repeat Simple_repeat 1 22 0 1385 99 0 0 chr4 59264290 59264482 -125024180 - L1PA10 LINE L1 -397 5771 5580 2530 98 6 3 chr4 59264482 59264838 -125023824 + L1PA10 LINE L1 5801 6159 -9 322 287 0 0 chr4 59265287 59265388 -125023274 + L1ME LINE L1 5569 5669 -452 2194 107 0 0 chr4 59265659 59265949 -125022713 + AluSc SINE Alu 1 290 -19 486 154 10 19 chr4 59265949 59266053 -125022609 + G-rich Low_complexity Low_complexity 1 103 0 5665 177 29 15 chr4 59266855 59267401 -125021261 - L1PA16 LINE L1 0 6166 5629 198 71 0 0 chr4 59267401 59267429 -125021233 + (TTG)n Simple_repeat Simple_repeat 3 30 0 2029 129 0 0 chr4 59267429 59267707 -125020955 - AluSg SINE Alu -32 278 1 5665 177 29 15 chr4 59267707 59269284 -125019378 - L1PA16 LINE L1 -536 5630 4019 2412 215 18 15 chr4 59269283 59269896 -125018766 + L1PA16 LINE L1 3388 4002 -2144 * 266 349 150 21 chr4 59269899 59270286 -125018376 + L2 LINE L2 1989 2425 -889 2168 202 81 14 chr4 59270760 59271205 -125017457 + MLT1D LTR MaLR 31 505 0 211 440 28 14 chr4 59271207 59271348 -125017314 + L2 LINE L2 2908 3050 -222 1710 217 99 18 chr4 59271384 59271818 -125016844 - MLT1D LTR MaLR -31 474 6 231 36 0 0 chr4 59271985 59272013 -125016649 + (TA)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr4 59272476 59272497 -125016165 + AT_rich Low_complexity Low_complexity 1 21 0 1809 142 139 23 chr4 59273242 59273587 -125015075 - MSTA LTR MaLR -2 426 42 22 0 0 0 chr4 59273769 59273791 -125014871 + AT_rich Low_complexity Low_complexity 1 22 0 390 140 9 19 chr4 59274820 59274927 -125013735 + (TA)n Simple_repeat Simple_repeat 2 107 0 1740 128 0 0 chr4 59274929 59275164 -125013498 - AluSx SINE Alu -31 281 47 1971 239 35 58 chr4 59275247 59275882 -125012780 + MER92B LTR ERV1 1 620 -16 1503 206 45 6 chr4 59276222 59276552 -125012110 + MER2 DNA MER2_type 2 344 0 227 182 148 23 chr4 59276615 59276703 -125011959 - MER5C DNA MER1_type -195 129 31 1863 158 3 7 chr4 59276979 59277283 -125011379 - AluSx SINE Alu -9 303 1 197 65 32 0 chr4 59278620 59278651 -125010011 + (CCA)n Simple_repeat Simple_repeat 1 32 0 210 211 22 22 chr4 59278967 59279057 -125009605 + CT-rich Low_complexity Low_complexity 4 93 0 212 231 0 0 chr4 59279990 59280029 -125008633 + (CA)n Simple_repeat Simple_repeat 2 40 0 42 36 0 0 chr4 59280762 59280818 -125007844 + AT_rich Low_complexity Low_complexity 1 56 0 286 240 0 27 chr4 59282131 59282206 -125006456 + (TATG)n Simple_repeat Simple_repeat 2 74 0 204 294 165 0 chr4 59282563 59282648 -125006014 - L2 LINE L2 -5 3267 3169 247 97 0 0 chr4 59282809 59282840 -125005822 - AluSx SINE Alu -254 45 15 1841 88 0 30 chr4 59282841 59283103 -125005559 + AluSx SINE Alu 55 308 -4 374 263 105 18 chr4 59283189 59283303 -125005359 + L2 LINE L2 3188 3311 -2 207 274 168 53 chr4 59284155 59284250 -125004412 - MIR SINE MIR -71 191 86 2077 117 3 3 chr4 59284463 59284754 -125003908 - AluSq SINE Alu -18 295 5 318 275 31 25 chr4 59284813 59284973 -125003689 + (TATATG)n Simple_repeat Simple_repeat 5 165 0 1804 246 75 45 chr4 59286222 59286798 -125001864 - MLT1E LTR MaLR 0 593 1 1503 213 42 63 chr4 59286955 59287403 -125001259 - MLT2D LTR ERVL -1 463 1 412 290 164 48 chr4 59287453 59287660 -125001002 - MIR SINE MIR -31 231 1 3507 161 5 93 chr4 59287777 59288554 -125000108 - L1PA6 LINE L1 -41 6113 5405 842 238 72 21 chr4 59288563 59288798 -124999864 - MSTD-int LTR MaLR -1487 248 2 1730 206 61 21 chr4 59288802 59289180 -124999482 - MSTD LTR MaLR -2 394 2 5657 198 35 4 chr4 59289184 59290399 -124998263 - L1 LINE L1 -910 5124 3873 983 220 5 10 chr4 59290399 59290599 -124998063 - L1 LINE L1 -5753 202 4 658 236 53 13 chr4 59291111 59291336 -124997326 + L1MD2 LINE L1 6123 6356 -3 58 28 0 0 chr4 59291339 59291411 -124997251 + AT_rich Low_complexity Low_complexity 1 72 0 238 275 89 30 chr4 59291458 59291694 -124996968 + L1MCa LINE L1 1232 1481 -4945 329 335 107 19 chr4 59291710 59291973 -124996689 + L1MCa LINE L1 1629 1914 -4512 343 251 46 119 chr4 59291979 59292282 -124996380 + L1ME3A LINE L1 5888 6168 -2 180 0 0 0 chr4 59292863 59292883 -124995779 + (TG)n Simple_repeat Simple_repeat 1 20 0 2039 122 0 3 chr4 59293086 59293374 -124995288 - AluSc SINE Alu -22 287 1 258 327 173 39 chr4 59293488 59293742 -124994920 + L2 LINE L2 2687 2974 -340 255 31 0 0 chr4 59293792 59293824 -124994838 + (CCA)n Simple_repeat Simple_repeat 3 34 0 264 405 9 0 chr4 59293919 59294035 -124994627 + L2 LINE L2 3156 3272 0 2075 137 0 3 chr4 59294036 59294329 -124994333 - AluSx SINE Alu -18 294 3 1740 203 22 17 chr4 59294617 59294977 -124993685 + MLT1D LTR MaLR 1 362 -143 244 132 0 0 chr4 59294979 59295017 -124993645 + L1MC2 LINE L1 3980 4017 -2129 924 187 35 35 chr4 59295045 59295275 -124993387 + L1MC2 LINE L1 4010 4239 -1907 4683 208 31 13 chr4 59295277 59296569 -124992093 + L1MC2 LINE L1 5029 6344 0 2618 104 0 0 chr4 59296858 59297213 -124991449 + THE1A LTR MaLR 1 355 0 4248 79 2 0 chr4 59297213 59297769 -124990893 + THE1A-int LTR MaLR 1 557 -1023 663 214 30 0 chr4 59297769 59297900 -124990762 - AluSg/x SINE Alu -11 301 167 2064 176 8 5 chr4 59297900 59298269 -124990393 + THE1A-int LTR MaLR 1112 1481 -99 252 284 0 0 chr4 59298385 59298452 -124990210 + G-rich Low_complexity Low_complexity 1 67 0 507 272 39 8 chr4 59299384 59299639 -124989023 + L1MCc LINE L1 18 402 -6021 2406 107 13 49 chr4 59300624 59301015 -124987647 + MER51B LTR ERV1 1 377 0 643 119 144 25 chr4 59301015 59301103 -124987559 + MER51B-int LTR ERV1 1 108 -7708 207 0 0 0 chr4 59301103 59301126 -124987536 + (TC)n Simple_repeat Simple_repeat 2 24 0 643 119 144 25 chr4 59301126 59301155 -124987507 + MER51B-int LTR ERV1 108 132 -7684 1141 116 0 0 chr4 59301166 59301339 -124987323 + MER51B-int LTR ERV1 974 1146 -6974 6339 28 6 0 chr4 59301339 59302126 -124986536 + L1P LINE L1 4567 5358 -788 923 219 53 32 chr4 59302440 59302687 -124985975 + THE1A LTR MaLR 1 252 -103 705 173 19 2 chr4 59302656 59302875 -124985787 + LTR26 LTR ERV1 336 589 -14 * 225 209 35 93 chr4 59303121 59303207 -124985455 - MER112 DNA MER1_type -176 84 4 534 271 23 64 chr4 59303472 59303537 -124985125 + MER58A DNA MER1_type 1 67 -2353 5987 112 10 1 chr4 59303537 59305611 -124983051 + L1PA14 LINE L1 4087 6161 0 534 271 23 64 chr4 59305611 59305763 -124982899 + MER58A DNA MER1_type 67 209 -15 2082 104 7 3 chr4 59306020 59306308 -124982354 - AluSq SINE Alu -6 307 19 332 323 46 46 chr4 59306767 59306962 -124981700 + MIR SINE MIR 64 258 -4 5495 80 95 1 chr4 59307727 59308482 -124980180 - LTR12 LTR ERV1 0 826 1 2303 162 23 9 chr4 59308499 59308931 -124979731 + MER61C LTR ERV1 13 434 0 3018 137 62 42 chr4 59310056 59310654 -124978008 + MER4B LTR ERV1 1 610 0 6539 51 10 8 chr4 59311133 59311996 -124976666 + L1PA3 LINE L1 5291 6155 0 4832 96 7 4 chr4 59311996 59312750 -124975912 + MER51-int LTR ERV1 1519 2274 -5542 634 81 0 0 chr4 59312751 59312837 -124975825 + MER51A LTR ERV1 549 634 0 622 33 0 33 chr4 59313181 59313272 -124975390 + (TAGA)n Simple_repeat Simple_repeat 3 90 0 1957 192 43 27 chr4 59313779 59314325 -124974337 + MLT2A2 LTR ERVL 1 554 0 38257 108 20 20 chr4 59314325 59319977 -124968685 + HERVL-A2 LTR ERVL 1 5654 0 1949 194 38 32 chr4 59319977 59320525 -124968137 + MLT2A2 LTR ERVL 1 554 0 791 321 61 21 chr4 59321510 59321887 -124966775 + L2 LINE L2 2920 3311 -2 181 333 0 0 chr4 59321937 59321994 -124966668 + L2 LINE L2 2671 2727 -587 543 262 29 109 chr4 59322327 59322537 -124966125 + L2 LINE L2 3121 3313 0 1109 186 53 90 chr4 59323628 59323983 -124964679 - MLT1A1 LTR MaLR -17 348 7 401 283 50 68 chr4 59326352 59326708 -124961954 + L1ME LINE L1 5571 5919 -202 28 0 0 0 chr4 59326789 59326817 -124961845 + AT_rich Low_complexity Low_complexity 1 28 0 492 183 58 0 chr4 59327087 59327207 -124961455 - LTR54B LTR ERV1 -160 338 212 721 147 17 0 chr4 59327262 59327378 -124961284 - LTR54B LTR ERV1 -380 118 1 25 31 0 0 chr4 59328768 59328800 -124959862 + AT_rich Low_complexity Low_complexity 1 32 0 2154 96 0 0 chr4 59328801 59329111 -124959551 + AluSx SINE Alu 1 310 0 28 61 0 0 chr4 59329679 59329728 -124958934 + AT_rich Low_complexity Low_complexity 1 49 0 2112 219 60 67 chr4 59330979 59331436 -124957226 - MLT1E2 LTR MaLR -13 613 155 2152 145 5 27 chr4 59331436 59331808 -124956854 - THE1B LTR MaLR 0 364 1 10740 102 21 22 chr4 59331808 59332101 -124956561 - THE1B-int LTR MaLR 0 1580 1288 2283 104 7 0 chr4 59332101 59332410 -124956252 + AluY SINE Alu 1 311 0 10740 102 21 22 chr4 59332410 59333697 -124954965 - THE1B-int LTR MaLR -292 1288 1 1656 168 78 26 chr4 59333697 59334043 -124954619 - THE1B LTR MaLR 0 364 1 2112 219 60 67 chr4 59334043 59334200 -124954462 - MLT1E2 LTR MaLR -468 158 1 799 184 82 110 chr4 59334593 59334848 -124953814 + MIR SINE MIR 15 262 0 771 183 8 8 chr4 59335021 59335152 -124953510 + MER2 DNA MER2_type 1 131 -214 320 92 2 70 chr4 59335159 59335226 -124953436 + Alu SINE Alu 247 301 -1 22 0 0 0 chr4 59335286 59335308 -124953354 + AT_rich Low_complexity Low_complexity 1 22 0 468 302 200 37 chr4 59336180 59336690 -124951972 - MLT1L LTR MaLR -13 602 10 291 343 6 50 chr4 59336832 59337013 -124951649 - MIR SINE MIR -87 175 3 255 61 0 0 chr4 59337319 59337352 -124951310 + (TC)n Simple_repeat Simple_repeat 2 34 0 324 0 0 0 chr4 59337352 59337388 -124951274 + (CA)n Simple_repeat Simple_repeat 1 36 0 378 0 0 0 chr4 59338184 59338226 -124950436 + (TA)n Simple_repeat Simple_repeat 2 43 0 1889 26 0 4 chr4 59338423 59338656 -124950006 + L1PA5 LINE L1 5918 6149 -5 22 35 0 0 chr4 59338713 59338742 -124949920 + AT_rich Low_complexity Low_complexity 1 29 0 241 244 85 37 chr4 59338742 59338824 -124949838 - MIR SINE MIR -15 247 162 1418 137 7 67 chr4 59339452 59339722 -124948940 + MSTB1 LTR MaLR 166 419 -13 2182 234 12 2 chr4 59339730 59340231 -124948431 + MSTB1-int LTR MaLR 1 506 -1145 1930 165 85 39 chr4 59340263 59340676 -124947986 + MSTB1 LTR MaLR 1 432 0 631 237 13 26 chr4 59340763 59340919 -124947743 - MER58B DNA MER1_type -5 336 183 1653 258 61 16 chr4 59340937 59341572 -124947090 - L1MDa LINE L1 -3182 2898 2235 715 267 123 54 chr4 59341586 59342141 -124946521 - L1MDa LINE L1 -4620 1460 868 1104 128 0 17 chr4 59342147 59342319 -124946343 - AluSp SINE Alu 0 313 145 1078 289 67 56 chr4 59342339 59343127 -124945535 - L1MDa LINE L1 -5223 847 51 1346 167 21 0 chr4 59344116 59344356 -124944306 + L1MB2 LINE L1 5885 6129 -42 21 36 0 0 chr4 59344363 59344391 -124944271 + AT_rich Low_complexity Low_complexity 1 28 0 261 273 36 45 chr4 59344419 59344529 -124944133 + L2 LINE L2 3199 3307 -6 220 296 0 14 chr4 59344590 59344661 -124944001 + (TATATG)n Simple_repeat Simple_repeat 6 75 0 270 196 0 0 chr4 59344668 59344719 -124943943 - MLT1I LTR MaLR -2 407 357 300 380 80 9 chr4 59345724 59345950 -124942712 + ERVL LTR ERVL 1374 1615 -4149 339 337 90 6 chr4 59346084 59346262 -124942400 + ERVL LTR ERVL 1751 1943 -3542 1375 229 143 50 chr4 59346310 59346772 -124941890 - MLT1D LTR MaLR 0 505 1 701 336 15 12 chr4 59346880 59347139 -124941523 + ERVL LTR ERVL 2187 2446 -3318 249 33 0 0 chr4 59348932 59348962 -124939700 + (TA)n Simple_repeat Simple_repeat 2 31 0 232 116 0 0 chr4 59348966 59349009 -124939653 + LTR66 LTR ERVL 394 436 -174 279 296 214 6 chr4 59349269 59349428 -124939234 + MIR SINE MIR 71 262 0 2148 61 11 11 chr4 59350303 59350581 -124938081 + AluY SINE Alu 1 278 -33 180 0 0 0 chr4 59350581 59350601 -124938061 + (CAA)n Simple_repeat Simple_repeat 2 21 0 203 132 53 0 chr4 59351048 59351086 -124937576 + GA-rich Low_complexity Low_complexity 3 42 0 2072 109 11 0 chr4 59351793 59352108 -124936554 + AluSq SINE Alu 1 318 0 462 309 94 43 chr4 59352264 59352656 -124936006 + L1MEd LINE L1 780 1191 -4928 423 265 68 52 chr4 59352695 59352756 -124935906 + L1MEd LINE L1 1322 1381 -4929 1755 236 11 0 chr4 59352756 59353117 -124935545 - MLT1A1 LTR MaLR 0 365 1 423 265 68 52 chr4 59353117 59353380 -124935282 + L1MEd LINE L1 1381 1651 -4659 22 0 0 0 chr4 59353756 59353778 -124934884 + AT_rich Low_complexity Low_complexity 1 22 0 622 309 147 9 chr4 59353778 59354322 -124934340 + L1MEd LINE L1 2230 2848 -3281 21 95 0 0 chr4 59354460 59354523 -124934139 + AT_rich Low_complexity Low_complexity 1 63 0 374 282 39 26 chr4 59354579 59354813 -124933849 + L1MEd LINE L1 3205 3441 -2688 654 276 113 62 chr4 59354914 59355849 -124932813 + L1MEd LINE L1 3610 4592 -1537 321 26 0 0 chr4 59355858 59355896 -124932766 + (TG)n Simple_repeat Simple_repeat 1 38 0 213 39 0 0 chr4 59355895 59355921 -124932741 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 5070 153 44 40 chr4 59356093 59356296 -124932366 - L1MA7 LINE L1 -1 6290 6089 1911 128 35 62 chr4 59356296 59356670 -124931992 + THE1B LTR MaLR 1 364 0 5070 153 44 40 chr4 59356670 59357495 -124931167 - L1MA7 LINE L1 -202 6089 5258 1720 209 24 7 chr4 59357506 59357927 -124930735 + L1MEd LINE L1 4861 5288 -841 452 328 148 25 chr4 59359767 59360280 -124928382 + L2 LINE L2 2148 2723 -591 220 378 67 0 chr4 59362248 59362367 -124926295 - MER5B DNA MER1_type -6 172 46 396 207 12 0 chr4 59362781 59362863 -124925799 + MER94 DNA DNA 7 89 -45 270 86 0 0 chr4 59363910 59363945 -124924717 + U2 snRNA snRNA 1 35 -153 283 239 45 11 chr4 59364162 59364250 -124924412 + GA-rich Low_complexity Low_complexity 1 91 0 500 284 6 49 chr4 59364278 59364440 -124924222 + MER63B DNA MER1_type 22 176 -260 701 228 11 97 chr4 59364533 59364801 -124923861 + MER63B DNA MER1_type 190 434 0 229 314 126 38 chr4 59365214 59365373 -124923289 + MER5A DNA MER1_type 16 188 -1 2357 88 7 0 chr4 59366030 59366335 -124922327 + AluSp SINE Alu 1 307 -6 245 247 62 99 chr4 59367561 59367642 -124921020 + MIR SINE MIR 8 85 -177 298 311 91 16 chr4 59367682 59367933 -124920729 + MLT1J1 LTR MaLR 53 322 -128 423 286 23 86 chr4 59368053 59368228 -124920434 + MIR SINE MIR 78 241 -21 231 287 21 91 chr4 59368235 59368297 -124920365 + L2 LINE L2 3140 3205 -67 1991 137 3 0 chr4 59368297 59368596 -124920066 - AluSx SINE Alu -12 300 1 231 287 21 91 chr4 59368596 59368676 -124919986 + L2 LINE L2 3205 3272 0 5726 202 20 8 chr4 59369945 59371781 -124916881 - L1MC1 LINE L1 -20 6593 4735 1053 157 23 0 chr4 59371781 59371953 -124916709 - L1MC1 LINE L1 -6227 199 24 2901 103 17 47 chr4 59372157 59372624 -124916038 - MLT2A2 LTR ERVL 0 453 1 234 174 0 0 chr4 59373762 59373808 -124914854 + CT-rich Low_complexity Low_complexity 1 46 0 25 75 0 0 chr4 59374879 59374932 -124913730 + AT_rich Low_complexity Low_complexity 1 53 0 659 323 77 65 chr4 59375168 59375795 -124912867 - L2 LINE L2 -5 3308 2683 2285 89 3 0 chr4 59375800 59376091 -124912571 + AluSp SINE Alu 3 294 -19 3602 222 60 9 chr4 59376470 59377459 -124911203 + L1PBa LINE L1 10 1048 -5815 1196 224 26 0 chr4 59377460 59377784 -124910878 + L1PBa LINE L1 1093 1567 -5296 425 363 52 52 chr4 59378083 59378563 -124910099 - L2 LINE L2 -5 3308 2829 2159 159 31 21 chr4 59379513 59379960 -124908702 + MLT2D LTR ERVL 1 464 0 201 372 26 0 chr4 59380247 59380325 -124908337 - MIR SINE MIR -16 246 167 419 211 125 8 chr4 59380462 59380590 -124908072 - L1ME3A LINE L1 -1 6169 6027 720 199 50 37 chr4 59380613 59380774 -124907888 - Tigger2 DNA MER2_type 0 2718 2556 * 5358 136 7 8 chr4 59380770 59381625 -124907037 - Tigger2 DNA MER2_type -1862 856 3 21 57 0 0 chr4 59381695 59381730 -124906932 + AT_rich Low_complexity Low_complexity 1 35 0 225 387 14 35 chr4 59381780 59381848 -124906814 + MIR3 SINE MIR 19 87 -121 1248 228 99 3 chr4 59381848 59382181 -124906481 + MLT1A1 LTR MaLR 1 365 0 225 387 14 35 chr4 59382181 59382254 -124906408 + MIR3 SINE MIR 87 157 -51 21 0 0 0 chr4 59383246 59383267 -124905395 + AT_rich Low_complexity Low_complexity 1 21 0 1416 191 19 19 chr4 59383339 59383606 -124905056 + AluJo SINE Alu 1 267 -45 639 142 0 0 chr4 59383617 59383723 -124904939 + (GGAGA)n Simple_repeat Simple_repeat 3 108 0 1117 147 301 34 chr4 59383934 59384289 -124904373 + LTR7 LTR ERV1 1 450 0 200 217 0 0 chr4 59384626 59384672 -124903990 + (TA)n Simple_repeat Simple_repeat 2 47 0 277 323 36 26 chr4 59384729 59384921 -124903741 - L1ME LINE L1 -453 5668 5475 2525 53 0 0 chr4 59385075 59385377 -124903285 - AluY SINE Alu -9 302 1 2022 142 3 0 chr4 59386127 59386422 -124902240 - AluSq SINE Alu -17 296 1 208 288 0 0 chr4 59386495 59386575 -124902087 + T-rich Low_complexity Low_complexity 1 80 0 331 317 72 40 chr4 59386730 59386979 -124901683 + L1ME LINE L1 5052 5308 -838 2314 103 0 0 chr4 59386988 59387289 -124901373 + AluSg SINE Alu 2 302 -8 428 360 31 13 chr4 59387428 59387656 -124901006 + L1ME LINE L1 5528 5759 -362 1662 205 153 91 chr4 59389615 59390293 -124898369 - LTR8A LTR ERV1 -7 720 1 22 35 0 0 chr4 59390467 59390496 -124898166 + AT_rich Low_complexity Low_complexity 1 29 0 1239 311 96 50 chr4 59391745 59392826 -124895836 - L2 LINE L2 -56 3257 2150 312 27 0 0 chr4 59392908 59392945 -124895717 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 564 364 40 3 chr4 59393127 59393451 -124895211 + L1MEc LINE L1 45 380 -6016 1412 257 110 33 chr4 59393453 59394024 -124894638 + MLT1E3 LTR MaLR 1 615 -9 1809 266 102 37 chr4 59394371 59396744 -124891918 + L1MEc LINE L1 692 3220 -2995 4195 156 74 34 chr4 59396996 59397409 -124891253 - L1PB4 LINE L1 -13 6143 5748 1755 197 0 0 chr4 59397409 59397714 -124890948 - AluJo SINE Alu -7 305 1 4195 156 74 34 chr4 59397714 59398067 -124890595 - L1PB4 LINE L1 -408 5748 5317 2380 94 3 0 chr4 59398067 59398376 -124890286 - AluSx SINE Alu -2 310 1 4195 156 74 34 chr4 59398376 59398598 -124890064 - L1PB4 LINE L1 -839 5317 5105 300 327 94 40 chr4 59398750 59398952 -124889710 + MLT1K LTR MaLR 153 365 -223 413 202 25 34 chr4 59399017 59399136 -124889526 + MLT1K LTR MaLR 471 588 0 8600 58 9 0 chr4 59399875 59400936 -124887726 + MER11C LTR ERVK 1 1071 0 2138 173 65 0 chr4 59401652 59402052 -124886610 - MSTC LTR MaLR 0 428 3 5906 114 17 16 chr4 59402239 59403227 -124885435 - L1PB1 LINE L1 -5 6146 5164 1180 211 45 13 chr4 59403227 59403535 -124885127 - L1 LINE L1 -851 5295 4978 6579 212 25 11 chr4 59403586 59405240 -124883422 - L1 LINE L1 -2236 3910 2234 12298 99 55 1 chr4 59405348 59407201 -124881461 - L1PBa LINE L1 -3892 2971 1019 2803 142 107 2 chr4 59407176 59407663 -124880999 - L1PBa LINE L1 -6170 693 156 * 2029 154 0 0 chr4 59407781 59408080 -124880582 + AluSx SINE Alu 2 300 -12 1917 129 0 0 chr4 59408196 59408452 -124880210 - AluSq SINE Alu -56 257 2 504 190 19 2 chr4 59409174 59409432 -124879230 + AluJo SINE Alu 1 303 -9 264 327 12 97 chr4 59409967 59410132 -124878530 + L2 LINE L2 2503 2653 -661 281 308 44 22 chr4 59410563 59410654 -124878008 + L2 LINE L2 3201 3293 -20 206 310 42 0 chr4 59410681 59410752 -124877910 - MIR SINE MIR -70 192 119 3577 172 13 26 chr4 59410754 59411456 -124877206 - Tigger1 DNA MER2_type 0 2418 1726 7888 138 14 18 chr4 59411457 59412768 -124875894 - Tigger1 DNA MER2_type -833 1585 280 2269 119 3 0 chr4 59412777 59413087 -124875575 - AluSx SINE Alu -1 311 1 1176 176 0 79 chr4 59415194 59415472 -124873190 - Tigger1 DNA MER2_type -2161 257 2 2017 94 54 0 chr4 59415625 59415742 -124872920 + AluSc SINE Alu 1 110 -199 1027 76 29 0 chr4 59415742 59415914 -124872748 + (TA)n Simple_repeat Simple_repeat 1 177 0 2017 94 54 0 chr4 59415914 59416028 -124872634 + AluSc SINE Alu 110 252 -57 195 42 0 0 chr4 59416028 59416052 -124872610 + (CACTG)n Simple_repeat Simple_repeat 1 24 0 2017 94 54 0 chr4 59416052 59416096 -124872566 + AluSc SINE Alu 252 292 -17 373 191 0 0 chr4 59416198 59416261 -124872401 - MER5A DNA MER1_type -1 188 126 689 289 54 0 chr4 59417788 59417954 -124870708 - MER5A DNA MER1_type -14 175 1 372 324 61 65 chr4 59417954 59418153 -124870509 + MIR SINE MIR 9 208 -54 363 23 0 0 chr4 59418153 59418197 -124870465 + (CA)n Simple_repeat Simple_repeat 2 45 0 372 324 61 65 chr4 59418197 59418242 -124870420 + MIR SINE MIR 208 252 -10 463 336 73 13 chr4 59418915 59419147 -124869515 - MIR SINE MIR -14 248 3 279 0 0 0 chr4 59419238 59419269 -124869393 + (CA)n Simple_repeat Simple_repeat 2 32 0 273 98 0 0 chr4 59419682 59419723 -124868939 + (TC)n Simple_repeat Simple_repeat 2 42 0 207 100 0 0 chr4 59420298 59420328 -124868334 + (TG)n Simple_repeat Simple_repeat 2 31 0 443 342 51 31 chr4 59420369 59420626 -124868036 + MIR SINE MIR 1 262 0 196 359 116 38 chr4 59420641 59421062 -124867600 + L2 LINE L2 2304 2757 -557 321 319 100 42 chr4 59421078 59421136 -124867526 + HAL1 LINE L1 4 57 -2450 1646 245 42 52 chr4 59421136 59421733 -124866929 - MLT1E LTR MaLR 0 593 3 321 319 100 42 chr4 59421733 59421934 -124866728 + HAL1 LINE L1 57 278 -2229 * 660 276 120 34 chr4 59421918 59422484 -124866178 + HAL1 LINE L1 1681 2295 -212 7209 241 85 41 chr4 59422996 59425292 -124863370 - L1M4c LINE L1 -4516 2137 2 267 294 62 59 chr4 59425263 59425535 -124863127 - L1M3d LINE L1 -5616 1037 765 * 28118 59 5 0 chr4 59425585 59431708 -124856954 - L1PA4 LINE L1 -4 6151 1 20171 161 28 22 chr4 59431895 59435870 -124852792 - L1MA3 LINE L1 0 7724 3774 214 28 28 28 chr4 59435870 59435906 -124852756 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 20171 161 28 22 chr4 59435906 59437846 -124850816 - L1MA3 LINE L1 -3950 3774 1740 411 38 0 0 chr4 59437846 59437899 -124850763 + (TC)n Simple_repeat Simple_repeat 2 54 0 20171 161 28 22 chr4 59437899 59439476 -124849186 - L1MA3 LINE L1 -5984 1740 174 23 0 0 0 chr4 59440338 59440361 -124848301 + AT_rich Low_complexity Low_complexity 1 23 0 552 327 86 7 chr4 59440721 59440990 -124847672 - MLT1L LTR MaLR -12 603 314 195 162 0 0 chr4 59441080 59441117 -124847545 + (CA)n Simple_repeat Simple_repeat 2 38 0 1246 226 49 86 chr4 59441397 59441826 -124846836 - L1MD2 LINE L1 -10 6349 5937 451 340 0 0 chr4 59442016 59442160 -124846502 - MER110 LTR ERV1 0 491 348 719 291 66 14 chr4 59442599 59442824 -124845838 - MER110-int LTR ERV1 -123 4524 4321 1752 147 75 33 chr4 59442830 59443190 -124845472 + THE1C LTR MaLR 1 375 0 9411 134 19 37 chr4 59443192 59444798 -124843864 + THE1C-int LTR MaLR 3 1580 0 1679 150 63 41 chr4 59444798 59445165 -124843497 + THE1C LTR MaLR 1 375 0 215 133 0 22 chr4 59445166 59445196 -124843466 + (TA)n Simple_repeat Simple_repeat 2 32 -13 1818 180 20 33 chr4 59445196 59445591 -124843071 + MLT1B LTR MaLR 1 390 0 215 133 0 22 chr4 59445591 59445605 -124843057 + (TA)n Simple_repeat Simple_repeat 32 45 0 1513 189 73 42 chr4 59445670 59446024 -124842638 - MSTD LTR MaLR -31 365 1 26 50 0 0 chr4 59447011 59447051 -124841611 + AT_rich Low_complexity Low_complexity 1 40 0 345 301 66 24 chr4 59447098 59447264 -124841398 - MLT1L LTR MaLR -54 561 389 318 26 0 0 chr4 59447286 59447325 -124841337 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 35 0 0 chr4 59448042 59448071 -124840591 + AT_rich Low_complexity Low_complexity 1 29 0 192 77 0 0 chr4 59448274 59448300 -124840362 + (T)n Simple_repeat Simple_repeat 1 26 0 2219 155 48 26 chr4 59448949 59449368 -124839294 - MSTA LTR MaLR 0 428 1 2138 123 3 19 chr4 59449510 59449826 -124838836 - AluSx SINE Alu -1 311 1 610 205 12 50 chr4 59449826 59449987 -124838675 - L1MD2 LINE L1 -11 6348 6194 1366 199 71 35 chr4 59450056 59450455 -124838207 - L1MD2 LINE L1 -475 5884 5432 289 160 0 0 chr4 59450462 59450512 -124838150 + L1ME LINE L1 5506 5555 -687 235 154 0 0 chr4 59450617 59450656 -124838006 + L1ME LINE L1 5517 5555 -609 291 169 104 13 chr4 59450658 59450735 -124837927 + L1MC/D LINE L1 5415 5498 -744 1848 191 36 63 chr4 59450737 59451353 -124837309 - L1MD2 LINE L1 -743 5403 4820 22 35 0 0 chr4 59451470 59451499 -124837163 + AT_rich Low_complexity Low_complexity 1 29 0 193 298 279 0 chr4 59452691 59452795 -124835867 - MIR SINE MIR -121 141 9 22 0 0 0 chr4 59452968 59452990 -124835672 + AT_rich Low_complexity Low_complexity 1 22 0 278 232 0 12 chr4 59453170 59453252 -124835410 + (TA)n Simple_repeat Simple_repeat 2 82 0 269 272 87 26 chr4 59454071 59454257 -124834405 - MIR SINE MIR 0 262 20 2428 58 0 19 chr4 59454866 59455177 -124833485 - AluY SINE Alu -6 305 1 24 0 0 0 chr4 59455596 59455620 -124833042 + AT_rich Low_complexity Low_complexity 1 24 0 1198 251 39 16 chr4 59455763 59456146 -124832516 + L1MC/D LINE L1 5388 5779 -2029 255 184 40 26 chr4 59456179 59456255 -124832407 + L1MC5 LINE L1 7407 7483 -478 1452 176 60 11 chr4 59456340 59456607 -124832055 - AluJo SINE Alu -32 280 1 614 227 51 11 chr4 59456627 59456803 -124831859 + L1MC5 LINE L1 7708 7890 -71 676 274 106 4 chr4 59457310 59457565 -124831097 - L1ME3 LINE L1 -26 6136 5856 198 156 0 0 chr4 59457575 59457620 -124831042 + T-rich Low_complexity Low_complexity 1 45 0 995 233 0 0 chr4 59457655 59457848 -124830814 - AluJo SINE Alu -119 193 1 650 270 112 27 chr4 59457849 59458145 -124830517 - L1ME3 LINE L1 -319 5851 5531 231 356 30 10 chr4 59458161 59458262 -124830400 + L2 LINE L2 2588 2690 -624 523 328 122 5 chr4 59458267 59458557 -124830105 - L2 LINE L2 -264 3049 2721 25 31 0 0 chr4 59458826 59458858 -124829804 + AT_rich Low_complexity Low_complexity 1 32 0 277 326 54 31 chr4 59459041 59459170 -124829492 + MER5B DNA MER1_type 7 138 -40 1694 190 139 32 chr4 59459206 59459637 -124829025 - MLT1D LTR MaLR 0 505 29 216 226 0 0 chr4 59459876 59459938 -124828724 + A-rich Low_complexity Low_complexity 1 62 0 2346 149 103 0 chr4 59460233 59460621 -124828041 - MSTC LTR MaLR 0 428 1 21 71 0 0 chr4 59460723 59460765 -124827897 + AT_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr4 59461033 59461059 -124827603 + AT_rich Low_complexity Low_complexity 1 26 0 2691 130 21 12 chr4 59462586 59463016 -124825646 - MER57B LTR ERV1 0 434 1 21 57 0 0 chr4 59464564 59464599 -124824063 + AT_rich Low_complexity Low_complexity 1 35 0 631 297 68 16 chr4 59465751 59466074 -124822588 + HsTC2 DNA Tc2 6 345 -1553 483 291 74 101 chr4 59466087 59466408 -124822254 - L2 LINE L2 -497 2817 2508 2117 136 0 7 chr4 59466408 59466709 -124821953 + AluSx SINE Alu 1 299 -13 483 291 74 101 chr4 59466709 59466792 -124821870 - L2 LINE L2 -806 2508 2424 2009 153 3 0 chr4 59466831 59467139 -124821523 + AluSx SINE Alu 1 309 -3 406 206 52 10 chr4 59467737 59467834 -124820828 - LTR41 LTR ERVL -672 101 1 2523 177 58 54 chr4 59467960 59468593 -124820069 - MER92B LTR ERV1 0 636 1 3976 128 19 12 chr4 59468732 59469381 -124819281 - MER39B LTR ERV1 0 653 1 1066 211 26 38 chr4 59469466 59469509 -124819153 - MLT2B3 LTR ERVL 0 554 512 1143 70 0 0 chr4 59469509 59469680 -124818982 + (TA)n Simple_repeat Simple_repeat 1 171 0 1066 211 26 38 chr4 59469680 59469991 -124818671 - MLT2B3 LTR ERVL -42 512 205 2281 103 21 0 chr4 59469991 59470321 -124818341 - THE1C-int LTR MaLR -1243 337 1 2527 115 16 11 chr4 59470321 59470694 -124817968 - THE1C LTR MaLR 0 375 1 210 234 0 0 chr4 59471115 59471162 -124817500 + (ATG)n Simple_repeat Simple_repeat 1 47 0 1229 226 107 52 chr4 59471776 59472215 -124816447 + MER31B LTR ERV1 1 463 -3 1466 94 0 33 chr4 59474452 59474665 -124813997 + AluY SINE Alu 100 305 -6 589 205 17 0 chr4 59474982 59475099 -124813563 + BC200 scRNA scRNA 1 119 -81 270 0 0 0 chr4 59475099 59475129 -124813533 + (CA)n Simple_repeat Simple_repeat 1 30 0 25 31 0 0 chr4 59475315 59475347 -124813315 + AT_rich Low_complexity Low_complexity 1 32 0 291 281 61 70 chr4 59475660 59475774 -124812888 + L2 LINE L2 3197 3309 -4 1283 234 157 64 chr4 59475810 59476345 -124812317 - MLT1E LTR MaLR -8 585 1 299 316 63 0 chr4 59476409 59476504 -124812158 + MIR SINE MIR 78 178 -84 247 224 0 15 chr4 59477138 59477205 -124811457 + (TTA)n Simple_repeat Simple_repeat 2 67 0 220 145 16 48 chr4 59477645 59477707 -124810955 + CT-rich Low_complexity Low_complexity 2 61 0 22 56 0 0 chr4 59478071 59478107 -124810555 + AT_rich Low_complexity Low_complexity 1 36 0 341 313 55 43 chr4 59478195 59478358 -124810304 - MIR3 SINE MIR -10 198 34 1891 143 0 11 chr4 59479774 59480054 -124808608 - AluSx SINE Alu -30 282 6 26 0 0 0 chr4 59480249 59480275 -124808387 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr4 59481224 59481253 -124807409 + AT_rich Low_complexity Low_complexity 1 29 0 2028 179 10 23 chr4 59482515 59482691 -124805971 + MLT1B LTR MaLR 3 180 -210 1844 145 10 7 chr4 59482691 59482994 -124805668 + AluSx SINE Alu 1 304 -8 2028 179 10 23 chr4 59482994 59483203 -124805459 + MLT1B LTR MaLR 180 383 -7 256 309 13 66 chr4 59485104 59485256 -124803406 + MLT1J LTR MaLR 319 462 -49 863 120 0 0 chr4 59485371 59485496 -124803166 - AluSg/x SINE Alu -7 303 179 4186 148 24 8 chr4 59486165 59486888 -124801774 - MER50 LTR ERV1 0 734 1 21 0 0 0 chr4 59487309 59487330 -124801332 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr4 59488019 59488040 -124800622 + (A)n Simple_repeat Simple_repeat 1 21 0 2178 94 37 7 chr4 59488040 59488338 -124800324 + AluSg SINE Alu 1 307 -3 224 224 0 20 chr4 59488907 59488956 -124799706 + GA-rich Low_complexity Low_complexity 1 48 0 231 300 181 31 chr4 59488996 59489156 -124799506 - MLT1J LTR MaLR -2 509 326 24 0 0 0 chr4 59490300 59490324 -124798338 + AT_rich Low_complexity Low_complexity 1 24 0 1617 180 7 24 chr4 59491901 59492195 -124796467 + AluJo SINE Alu 6 294 -18 587 230 56 42 chr4 59492899 59493165 -124795497 - LTR40b LTR ERVL 0 462 163 183 204 0 0 chr4 59493885 59493929 -124794733 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 772 185 0 0 chr4 59494072 59494218 -124794444 + L1MA5A LINE L1 6148 6293 -4 2013 143 0 0 chr4 59494248 59494549 -124794113 + AluSx SINE Alu 3 303 -9 24 91 0 0 chr4 59494651 59494717 -124793945 + AT_rich Low_complexity Low_complexity 1 66 0 187 291 18 0 chr4 59495883 59495938 -124792724 + L2 LINE L2 2998 3053 -219 527 333 79 9 chr4 59496094 59496409 -124792253 - L2 LINE L2 -36 3277 2941 210 154 0 0 chr4 59498023 59498062 -124790600 + T-rich Low_complexity Low_complexity 1 39 0 252 0 0 0 chr4 59498930 59498958 -124789704 + (TA)n Simple_repeat Simple_repeat 2 29 0 2042 90 3 27 chr4 59498958 59499259 -124789403 - AluY SINE Alu -17 294 1 21 0 0 0 chr4 59499751 59499772 -124788890 + AT_rich Low_complexity Low_complexity 1 21 0 192 125 0 0 chr4 59500052 59500084 -124788578 + (TG)n Simple_repeat Simple_repeat 1 32 0 926 244 57 94 chr4 59501171 59501288 -124787374 - MLT1F1 LTR MaLR -54 513 393 1347 192 5 131 chr4 59501288 59501716 -124786946 + MLT1A2 LTR MaLR 1 374 0 926 244 57 94 chr4 59501716 59502126 -124786536 - MLT1F1 LTR MaLR -174 393 2 1165 338 37 21 chr4 59502758 59503270 -124785392 - L2 LINE L2 -337 2977 2458 25 0 0 0 chr4 59503488 59503513 -124785149 + AT_rich Low_complexity Low_complexity 1 25 0 4039 68 8 0 chr4 59503672 59504203 -124784459 - L1PA7 LINE L1 -4 6150 5616 236 128 51 0 chr4 59504316 59504355 -124784307 + L1P LINE L1 3978 4018 -2128 * 9718 96 10 5 chr4 59504331 59505992 -124782670 - L1PA7 LINE L1 -515 5639 3978 188 308 0 0 chr4 59506834 59506873 -124781789 - MIR SINE MIR -110 98 60 23 33 0 0 chr4 59507607 59507637 -124781025 + AT_rich Low_complexity Low_complexity 1 30 0 186 43 0 0 chr4 59507672 59507695 -124780967 + (A)n Simple_repeat Simple_repeat 1 23 0 243 269 101 108 chr4 59507812 59508080 -124780582 - L2 LINE L2 0 3313 3048 458 286 79 11 chr4 59508084 59508262 -124780400 - LTR16A1 LTR ERVL -13 444 255 570 290 81 15 chr4 59508324 59508635 -124780027 - HERV16 LTR ERVL -2755 2241 1849 22 99 0 0 chr4 59508914 59508985 -124779677 + AT_rich Low_complexity Low_complexity 1 71 0 21 0 0 0 chr4 59509339 59509360 -124779302 + AT_rich Low_complexity Low_complexity 1 21 0 256 224 13 40 chr4 59509928 59510004 -124778658 + GA-rich Low_complexity Low_complexity 1 74 0 27 49 0 0 chr4 59510911 59510952 -124777710 + AT_rich Low_complexity Low_complexity 1 41 0 466 313 97 41 chr4 59511327 59511830 -124776832 - L2 LINE L2 0 3313 2692 217 380 33 8 chr4 59511856 59511977 -124776685 + L2 LINE L2 3147 3270 -2 268 354 61 10 chr4 59513235 59513334 -124775328 - L2 LINE L2 -22 3291 3188 27 29 0 0 chr4 59513400 59513434 -124775228 + AT_rich Low_complexity Low_complexity 1 34 0 289 390 96 16 chr4 59513444 59513693 -124774969 - L2 LINE L2 -191 3081 2813 1807 148 60 65 chr4 59514180 59514566 -124774096 + MLT1B LTR MaLR 1 384 -6 1265 183 129 4 chr4 59514684 59514947 -124773715 + AluJb SINE Alu 1 296 -16 197 0 0 67 chr4 59516807 59516837 -124771825 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 747 163 8 0 chr4 59517781 59517904 -124770758 + FAM SINE Alu 10 133 -52 24 32 0 0 chr4 59522956 59522987 -124765675 + AT_rich Low_complexity Low_complexity 1 31 0 216 313 22 52 chr4 59523795 59523929 -124764733 + MIR SINE MIR 22 151 -111 24 32 0 0 chr4 59524538 59524569 -124764093 + AT_rich Low_complexity Low_complexity 1 31 0 1111 191 8 51 chr4 59524719 59524955 -124763707 + LTR8 LTR ERV1 1 226 -465 280 193 0 0 chr4 59526166 59526223 -124762439 - MLT1F LTR MaLR -457 85 29 221 125 0 21 chr4 59526797 59526845 -124761817 + (TC)n Simple_repeat Simple_repeat 2 48 0 327 25 0 0 chr4 59526845 59526885 -124761777 + (CA)n Simple_repeat Simple_repeat 1 40 0 234 209 0 0 chr4 59527205 59527248 -124761414 + L2 LINE L2 3217 3259 -13 2553 243 58 69 chr4 59527746 59528725 -124759937 + L1MC5 LINE L1 6441 7396 -565 2136 128 0 0 chr4 59528725 59529030 -124759632 + AluSx SINE Alu 5 309 -3 2553 243 58 69 chr4 59529030 59529557 -124759105 + L1MC5 LINE L1 7396 7927 -34 21 36 0 0 chr4 59529567 59529595 -124759067 + AT_rich Low_complexity Low_complexity 1 28 0 42 14 0 56 chr4 59530516 59530544 -124758118 + AT_rich Low_complexity Low_complexity 1 29 -39 1824 148 0 17 chr4 59530544 59530834 -124757828 + AluSx SINE Alu 3 287 -25 42 14 0 56 chr4 59530834 59530877 -124757785 + AT_rich Low_complexity Low_complexity 29 68 0 326 65 21 65 chr4 59531141 59531234 -124757428 + (TTCTC)n Simple_repeat Simple_repeat 4 92 0 243 296 74 19 chr4 59531234 59531396 -124757266 - L1M4 LINE L1 -1325 4821 4651 385 313 128 30 chr4 59531592 59532010 -124756652 - L1MC/D LINE L1 -504 5658 5296 23 33 0 0 chr4 59532315 59532345 -124756317 + AT_rich Low_complexity Low_complexity 1 30 0 28 71 0 0 chr4 59532404 59532460 -124756202 + AT_rich Low_complexity Low_complexity 1 56 0 25 0 0 0 chr4 59532511 59532536 -124756126 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr4 59532666 59532695 -124755967 + AT_rich Low_complexity Low_complexity 1 29 0 395 300 84 80 chr4 59532807 59533381 -124755281 + L1MC4a LINE L1 4398 4973 -1173 351 258 80 37 chr4 59533464 59533763 -124754899 + L1MC4a LINE L1 5087 5398 -748 23 33 0 0 chr4 59533809 59533839 -124754823 + AT_rich Low_complexity Low_complexity 1 30 0 272 229 124 48 chr4 59533913 59534162 -124754500 + L1MC4a LINE L1 5630 5897 -1911 29 28 0 0 chr4 59534166 59534202 -124754460 + AT_rich Low_complexity Low_complexity 1 36 0 31 0 0 0 chr4 59534586 59534617 -124754045 + AT_rich Low_complexity Low_complexity 1 31 0 24 53 0 0 chr4 59536531 59536569 -124752093 + AT_rich Low_complexity Low_complexity 1 38 0 314 202 60 36 chr4 59536945 59537029 -124751633 + L2 LINE L2 3184 3269 -44 1687 245 99 37 chr4 59537181 59537880 -124750782 + HsTC2a DNA MER2_type 3 744 0 550 181 4 7 chr4 59538650 59538888 -124749774 + AluJo SINE Alu 1 300 -12 334 82 0 33 chr4 59538911 59538972 -124749690 + (GAA)n Simple_repeat Simple_repeat 1 59 0 808 112 0 0 chr4 59539626 59539742 -124748920 - AluSg/x SINE Alu -4 305 190 1858 97 0 8 chr4 59540279 59540536 -124748126 - AluSq SINE Alu -58 255 1 7213 42 4 0 chr4 59590754 59592386 -124696276 - L1PA5 LINE L1 -4 6150 4482 1885 154 0 13 chr4 59592484 59592783 -124695879 + AluSx SINE Alu 4 298 -14 21 36 0 0 chr4 59593825 59593853 -124694809 + AT_rich Low_complexity Low_complexity 1 28 0 701 222 119 35 chr4 59594115 59594241 -124694421 + L1M4 LINE L1 4616 4730 -1416 4746 104 19 74 chr4 59594241 59595065 -124693597 + MER4E LTR ERV1 1 779 0 701 222 119 35 chr4 59595065 59595199 -124693463 + L1M4 LINE L1 4730 4898 -1248 761 313 157 18 chr4 59595396 59596071 -124692591 - L2 LINE L2 -4 3309 2541 193 322 11 23 chr4 59596323 59596410 -124692252 - L2 LINE L2 -1966 1348 1263 605 341 30 70 chr4 59596443 59597003 -124691659 - L2 LINE L2 -2660 654 117 2201 287 168 20 chr4 59597135 59598370 -124690292 - L2 LINE L2 0 3313 1895 274 330 107 19 chr4 59598879 59598982 -124689680 + L2 LINE L2 3144 3255 -17 496 209 27 80 chr4 59599423 59599610 -124689052 + MER69A DNA AcHobo 1 177 0 2251 93 20 7 chr4 59599715 59600015 -124688647 - AluSg SINE Alu -6 304 1 7016 34 31 2 chr4 59602724 59603871 -124684791 + L1PA4 LINE L1 4980 6151 -4 3224 81 22 33 chr4 59603904 59604362 -124684300 - MLT2A2 LTR ERVL 0 453 1 8566 76 19 4 chr4 59604362 59605482 -124683180 - HERVL-A2 LTR ERVL 0 5654 4518 * 20790 87 8 8 chr4 59605470 59605532 -124683130 - HERVL-A2 LTR ERVL -2867 2787 2726 4535 138 45 4 chr4 59605532 59606280 -124682382 - MER4E LTR ERV1 0 779 1 20790 87 8 8 chr4 59606280 59609004 -124679658 - HERVL-A2 LTR ERVL -2927 2727 1 3134 110 18 0 chr4 59609004 59609449 -124679213 - MLT2A2 LTR ERVL 0 453 1 216 0 0 0 chr4 59609641 59609665 -124678997 + (T)n Simple_repeat Simple_repeat 1 24 0 189 0 0 0 chr4 59611537 59611558 -124677104 + (TTTAG)n Simple_repeat Simple_repeat 2 22 0 209 244 0 0 chr4 59612083 59612124 -124676538 + (TA)n Simple_repeat Simple_repeat 2 42 0 1369 263 100 48 chr4 59612703 59613384 -124675278 - MER20B DNA MER1_type -15 768 53 1115 250 18 7 chr4 59614596 59614872 -124673790 - MLT1C LTR MaLR 0 467 189 1962 143 0 11 chr4 59614893 59615180 -124673482 - AluSx SINE Alu -28 284 1 29 60 0 0 chr4 59615191 59615241 -124673421 + AT_rich Low_complexity Low_complexity 1 50 0 13796 202 23 15 chr4 59615244 59615593 -124673069 - L1PB1 LINE L1 -8 6859 6514 351 0 0 0 chr4 59615593 59615632 -124673030 + (TG)n Simple_repeat Simple_repeat 2 40 0 13796 202 23 15 chr4 59615632 59617003 -124671659 - L1PB1 LINE L1 -353 6514 5156 225 0 0 0 chr4 59617003 59617028 -124671634 + (TTG)n Simple_repeat Simple_repeat 3 27 0 13796 202 23 15 chr4 59617028 59620259 -124668403 - L1PB1 LINE L1 -1711 5156 1853 471 73 0 0 chr4 59620259 59620327 -124668335 + (TC)n Simple_repeat Simple_repeat 2 69 0 288 0 0 0 chr4 59620327 59620359 -124668303 + (CA)n Simple_repeat Simple_repeat 1 32 0 4041 139 30 3 chr4 59620904 59621614 -124667048 - L1MA6 LINE L1 0 6300 5572 1470 165 85 11 chr4 59621656 59621928 -124666734 - AluJo SINE Alu -20 292 1 258 146 0 0 chr4 59621928 59621969 -124666693 - L1MA6 LINE L1 -727 5585 5545 1504 225 26 17 chr4 59622110 59622461 -124666201 + MLT1A1 LTR MaLR 11 364 -1 250 273 0 15 chr4 59622680 59622746 -124665916 + GA-rich Low_complexity Low_complexity 1 65 0 27 49 0 0 chr4 59622794 59622835 -124665827 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr4 59622970 59622995 -124665667 + AT_rich Low_complexity Low_complexity 1 25 0 1231 213 127 33 chr4 59623629 59623991 -124664671 + MSTD LTR MaLR 1 396 0 2347 141 67 10 chr4 59624095 59624500 -124664162 - MSTA LTR MaLR 0 428 1 8789 186 16 6 chr4 59624500 59626133 -124662529 - MSTA-int LTR MaLR 0 1651 1 2192 156 67 10 chr4 59626133 59626538 -124662124 - MSTA LTR MaLR 0 428 1 312 113 19 0 chr4 59627093 59627146 -124661516 + MADE1 DNA Mariner 27 80 0 290 200 115 62 chr4 59627281 59627364 -124661298 - MER69 DNA AcHobo -121 2405 2311 2437 69 7 0 chr4 59627364 59627669 -124660993 + AluY SINE Alu 1 307 -4 290 200 115 62 chr4 59627669 59627715 -124660947 - MER69 DNA AcHobo -215 2311 2269 456 283 69 12 chr4 59627805 59627978 -124660684 - MER69 DNA AcHobo -1494 1032 850 2042 164 17 0 chr4 59628005 59628365 -124660297 - L1PB4 LINE L1 -7 6149 5784 1049 136 9 8 chr4 59628367 59628597 -124660065 - L1PB4 LINE L1 -496 5660 5337 2073 136 0 0 chr4 59628598 59628892 -124659770 + AluSx SINE Alu 1 294 -18 323 244 0 24 chr4 59628895 59628977 -124659685 - L1MC4 LINE L1 -1339 6703 6624 222 150 0 0 chr4 59628998 59629038 -124659624 + (TA)n Simple_repeat Simple_repeat 2 41 0 3436 212 58 20 chr4 59629038 59629401 -124659261 - L1MA6 LINE L1 -800 5346 4998 2196 130 11 17 chr4 59629401 59629756 -124658906 - THE1A LTR MaLR 0 355 3 3436 212 58 20 chr4 59629756 59630566 -124658096 - L1MA6 LINE L1 -1148 4998 4078 2117 291 77 22 chr4 59630582 59631359 -124657303 - MER69 DNA AcHobo -1700 826 7 472 165 174 16 chr4 59631624 59631741 -124656921 + THE1C LTR MaLR 1 136 -239 2058 219 54 57 chr4 59631741 59632557 -124656105 + LTR27 LTR ERV1 2 878 -128 941 124 7 7 chr4 59632557 59632694 -124655968 - AluSq/x SINE Alu -174 138 2 186 206 0 0 chr4 59632753 59632787 -124655875 + L2 LINE L2 3257 3290 -23 21 57 0 0 chr4 59632892 59632927 -124655735 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr4 59635533 59635569 -124653093 + AT_rich Low_complexity Low_complexity 1 36 0 229 366 108 30 chr4 59635716 59636178 -124652484 - L2 LINE L2 -10 3303 2806 3897 181 74 13 chr4 59636213 59636548 -124652114 - L1MA9 LINE L1 -171 6205 5892 3560 187 84 59 chr4 59636548 59637457 -124651205 - MER21A LTR ERV1 0 931 1 3897 181 74 13 chr4 59637457 59638438 -124650224 - L1MA9 LINE L1 -484 5892 4822 1085 204 5 24 chr4 59638493 59638704 -124649958 - AluJo SINE Alu -105 207 1 576 152 10 0 chr4 59638705 59638804 -124649858 - L1MA9 LINE L1 -1373 4837 4738 * 949 220 38 141 chr4 59638803 59639358 -124649304 - L1MA9 LINE L1 -4668 1463 966 383 358 59 47 chr4 59640509 59641001 -124647661 - L1MA9 LINE L1 -5637 504 7 431 302 102 10 chr4 59641080 59641285 -124647377 + MLT1H LTR MaLR 22 245 -304 287 220 42 102 chr4 59641416 59641534 -124647128 + MLT1H LTR MaLR 423 533 -16 6490 107 3 0 chr4 59642306 59643198 -124645464 - THE1B-int LTR MaLR -685 895 1 2238 95 59 39 chr4 59643198 59643555 -124645107 - THE1B LTR MaLR 0 364 1 349 210 61 41 chr4 59643563 59643720 -124644942 - L1MB1 LINE L1 -6 6162 6019 * 885 229 44 46 chr4 59643713 59643980 -124644682 - L1M3c LINE L1 -5855 1182 20 220 204 0 0 chr4 59644095 59644149 -124644513 + T-rich Low_complexity Low_complexity 1 54 0 256 337 93 70 chr4 59645233 59645417 -124643245 + L2 LINE L2 2556 2734 -538 2222 129 0 0 chr4 59645417 59645728 -124642934 - AluSx SINE Alu -1 311 1 256 337 93 70 chr4 59645728 59646193 -124642469 + L2 LINE L2 2734 3199 -73 2396 136 8 0 chr4 59646865 59647219 -124641443 + THE1B LTR MaLR 7 363 -1 664 204 28 57 chr4 59647376 59647490 -124641172 + MLT1D LTR MaLR 1 110 -395 3339 90 8 6 chr4 59647490 59647959 -124640703 + L1PA7 LINE L1 5685 6154 0 664 204 28 57 chr4 59647959 59648020 -124640642 + MLT1D LTR MaLR 110 171 -334 * 952 204 32 19 chr4 59648015 59648231 -124640431 + MLT1D LTR MaLR 287 505 0 514 241 196 6 chr4 59648232 59648390 -124640272 - MIR SINE MIR -72 190 3 236 131 23 3 chr4 59648578 59648622 -124640040 + MLT1D LTR MaLR 328 387 -102 247 335 125 0 chr4 59648838 59648990 -124639672 + MIR3 SINE MIR 38 208 0 882 264 199 55 chr4 59649442 59649983 -124638679 + MLT1G1 LTR MaLR 1 573 -17 279 268 0 0 chr4 59650618 59650689 -124637973 + MLT1L LTR MaLR 5 75 -540 22 35 0 0 chr4 59652573 59652602 -124636060 + AT_rich Low_complexity Low_complexity 1 29 0 433 306 114 9 chr4 59653886 59654105 -124634557 - MIR SINE MIR 0 262 21 34 0 0 0 chr4 59654631 59654665 -124633997 + AT_rich Low_complexity Low_complexity 1 34 0 204 343 14 0 chr4 59654859 59654929 -124633733 - MER5A DNA MER1_type -83 106 36 345 290 82 74 chr4 59656362 59657211 -124631451 + L1ME3A LINE L1 474 1359 -4879 513 300 125 49 chr4 59657323 59658661 -124630001 + L1M4 LINE L1 3588 5026 -1120 22 0 0 0 chr4 59658724 59658746 -124629916 + AT_rich Low_complexity Low_complexity 1 22 0 537 103 0 0 chr4 59658746 59658824 -124629838 + MER41B LTR ERV1 481 558 -77 23 33 0 0 chr4 59658840 59658870 -124629792 + AT_rich Low_complexity Low_complexity 1 30 0 244 239 99 70 chr4 59658893 59659136 -124629526 + L1M4 LINE L1 5135 5384 -762 1513 236 87 22 chr4 59659246 59659887 -124628775 - MER69 DNA AcHobo -9 2517 1835 2165 260 67 35 chr4 59659916 59660175 -124628487 - MER69 DNA AcHobo -1652 874 625 1660 92 127 64 chr4 59660175 59660458 -124628204 + AluSg SINE Alu 1 301 -9 2165 260 67 35 chr4 59660458 59660978 -124627684 - MER69 DNA AcHobo -1901 625 70 354 250 68 6 chr4 59660978 59661154 -124627508 + L1ME3A LINE L1 2209 2395 -3734 4084 234 31 10 chr4 59661247 59662840 -124625822 - L1MB7 LINE L1 -10 6174 4541 767 286 79 27 chr4 59662874 59663594 -124625068 + L1ME3A LINE L1 5126 5889 -264 24 53 0 0 chr4 59663614 59663652 -124625010 + AT_rich Low_complexity Low_complexity 1 38 0 2820 157 2 4 chr4 59663793 59664258 -124624404 + L1PA13 LINE L1 3756 4219 -1927 3017 104 4 38 chr4 59664258 59664884 -124623778 + L1PA13 LINE L1 5098 5693 -475 3224 73 10 47 chr4 59665349 59665839 -124622823 + L1PA13 LINE L1 5677 6148 -15 2359 90 0 10 chr4 59665925 59666235 -124622427 - AluSq SINE Alu -6 307 1 420 20 0 0 chr4 59666589 59666638 -124622024 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 479 272 36 72 chr4 59667430 59667625 -124621037 + MIR SINE MIR 74 261 -1 1244 290 78 56 chr4 59667804 59668380 -124620282 + MLT1E LTR MaLR 5 593 0 199 311 0 0 chr4 59668771 59668816 -124619846 + L2 LINE L2 3193 3237 -35 352 285 34 15 chr4 59668878 59668983 -124619679 + MIR SINE MIR 13 117 -91 2936 54 3 0 chr4 59669059 59669413 -124619249 - THE1A LTR MaLR 0 355 1 23 0 0 0 chr4 59669704 59669727 -124618935 + AT_rich Low_complexity Low_complexity 1 23 0 1939 178 80 62 chr4 59669955 59670443 -124618219 - LOR1a LTR ERV1 0 497 1 1904 127 26 19 chr4 59670550 59670857 -124617805 + AluSx SINE Alu 1 309 -3 511 232 144 88 chr4 59671184 59671662 -124617000 + L1MC5 LINE L1 7408 7912 -49 1276 229 0 0 chr4 59671951 59672169 -124616493 + Tigger7 DNA MER2_type 1 218 -515 614 177 9 18 chr4 59672169 59672282 -124616380 + Tigger7 DNA MER2_type 2475 2586 -1 21 0 0 0 chr4 59672305 59672326 -124616336 + AT_rich Low_complexity Low_complexity 1 21 0 1047 318 101 4 chr4 59672508 59673015 -124615647 - L2 LINE L2 0 3313 2752 692 277 35 91 chr4 59674167 59674362 -124614300 - MLT1J LTR MaLR -2 509 343 1323 143 176 37 chr4 59674362 59674635 -124614027 - AluSq SINE Alu -1 312 2 692 277 35 91 chr4 59674635 59674814 -124613848 - MLT1J LTR MaLR -168 343 156 305 115 77 0 chr4 59674879 59674931 -124613731 - MADE1 DNA Mariner -24 56 1 589 246 0 8 chr4 59675323 59675453 -124613209 + FLAM_C SINE Alu 5 133 0 21 0 0 0 chr4 59675926 59675947 -124612715 + AT_rich Low_complexity Low_complexity 1 21 0 20357 105 13 52 chr4 59676168 59682625 -124606037 + L1PA7 LINE L1 12 6151 -3 189 280 20 0 chr4 59682625 59682675 -124605987 - L2 LINE L2 -9 3304 3254 382 190 13 14 chr4 59684333 59684416 -124604246 - MSTD LTR MaLR -66 324 235 27 0 0 0 chr4 59684495 59684522 -124604140 + AT_rich Low_complexity Low_complexity 1 27 0 380 37 19 0 chr4 59684547 59684601 -124604061 + (TG)n Simple_repeat Simple_repeat 1 55 0 793 271 57 36 chr4 59685604 59685851 -124602811 - MIR SINE MIR 0 262 11 273 362 79 7 chr4 59686228 59686380 -124602282 + MIR3 SINE MIR 40 202 -6 296 285 34 92 chr4 59687060 59687267 -124601395 - MER117 DNA MER1_type 0 197 3 436 217 17 75 chr4 59688143 59688263 -124600399 - MER5B DNA MER1_type -2 176 64 243 0 0 0 chr4 59688265 59688292 -124600370 + (T)n Simple_repeat Simple_repeat 1 27 0 22 35 0 0 chr4 59688571 59688600 -124600062 + AT_rich Low_complexity Low_complexity 1 29 0 984 97 0 32 chr4 59688669 59688824 -124599838 + L1PA16 LINE L1 6017 6166 0 245 208 14 0 chr4 59689930 59690002 -124598660 + (CA)n Simple_repeat Simple_repeat 2 74 0 186 43 0 0 chr4 59690004 59690027 -124598635 + (TG)n Simple_repeat Simple_repeat 2 24 0 197 261 189 27 chr4 59690311 59690422 -124598240 + MER5A DNA MER1_type 24 152 -37 485 42 42 0 chr4 59690987 59691058 -124597604 - AluSp/q SINE Alu -8 305 232 240 291 128 1 chr4 59691446 59691540 -124597122 - MIR SINE MIR -73 135 35 231 281 164 31 chr4 59691835 59691963 -124596699 + MIR SINE MIR 112 256 -6 23 33 0 0 chr4 59693975 59694005 -124594657 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr4 59694782 59694805 -124593857 + AT_rich Low_complexity Low_complexity 1 23 0 734 234 0 18 chr4 59695614 59695781 -124592881 + FRAM SINE Alu 1 164 -2 22 0 0 0 chr4 59698626 59698648 -124590014 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr4 59699084 59699122 -124589540 + AT_rich Low_complexity Low_complexity 1 38 0 229 172 0 52 chr4 59699195 59699253 -124589409 + GA-rich Low_complexity Low_complexity 2 56 0 21 0 0 0 chr4 59703202 59703223 -124585439 + AT_rich Low_complexity Low_complexity 1 21 0 484 330 34 6 chr4 59703955 59704134 -124584528 - MIR3 SINE MIR -9 199 16 21 36 0 0 chr4 59705318 59705346 -124583316 + AT_rich Low_complexity Low_complexity 1 28 0 478 321 146 44 chr4 59705555 59705966 -124582696 + L3 LINE CR1 1053 1505 -72 22 56 0 0 chr4 59707010 59707046 -124581616 + AT_rich Low_complexity Low_complexity 1 36 0 246 244 32 24 chr4 59707747 59707870 -124580792 + A-rich Low_complexity Low_complexity 2 125 0 30 0 0 0 chr4 59708117 59708147 -124580515 + AT_rich Low_complexity Low_complexity 1 30 0 5182 179 39 35 chr4 59708527 59709685 -124578977 + L1MD2 LINE L1 5189 6345 -14 287 167 0 0 chr4 59709691 59709733 -124578929 + Alu SINE Alu 1 42 -261 195 239 179 0 chr4 59712434 59712501 -124576161 + L2 LINE L2 3234 3312 -1 1888 167 0 3 chr4 59712990 59713295 -124575367 + AluSx SINE Alu 6 309 -3 21 0 0 0 chr4 59714677 59714698 -124573964 + AT_rich Low_complexity Low_complexity 1 21 0 258 336 47 9 chr4 59714744 59714851 -124573811 - MIR3 SINE MIR -15 193 83 22 0 0 0 chr4 59714864 59714886 -124573776 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr4 59715025 59715057 -124573605 + AT_rich Low_complexity Low_complexity 1 32 0 644 304 60 25 chr4 59715806 59716276 -124572386 - L1ME LINE L1 -473 5689 5202 30 0 0 0 chr4 59718025 59718055 -124570607 + AT_rich Low_complexity Low_complexity 1 30 0 35 0 0 0 chr4 59718273 59718308 -124570354 + AT_rich Low_complexity Low_complexity 1 35 0 246 323 8 46 chr4 59718768 59718898 -124569764 + MIR SINE MIR 28 152 -110 235 156 0 0 chr4 59719761 59719806 -124568856 - LTR66 LTR ERVL -172 438 394 241 171 14 14 chr4 59719818 59719888 -124568774 + (TA)n Simple_repeat Simple_repeat 1 70 0 24 53 0 0 chr4 59721840 59721878 -124566784 + AT_rich Low_complexity Low_complexity 1 38 0 1424 210 14 0 chr4 59722111 59722402 -124566260 + AluJo SINE Alu 1 295 -17 2292 85 0 0 chr4 59722403 59722734 -124565928 + AluSg SINE Alu 1 331 0 324 148 0 0 chr4 59725703 59725764 -124562898 + (GA)n Simple_repeat Simple_repeat 2 62 0 28 0 0 0 chr4 59727627 59727655 -124561007 + AT_rich Low_complexity Low_complexity 1 28 0 449 304 153 29 chr4 59727780 59728196 -124560466 + L1ME3A LINE L1 5677 6155 -15 543 279 79 116 chr4 59728345 59728803 -124559859 + L2 LINE L2 2805 3245 -68 239 234 16 16 chr4 59728815 59728879 -124559783 + (TA)n Simple_repeat Simple_repeat 2 65 0 397 284 132 21 chr4 59728907 59729097 -124559565 - MIR SINE MIR -48 214 4 28 79 0 0 chr4 59729506 59729569 -124559093 + AT_rich Low_complexity Low_complexity 1 63 0 306 324 119 55 chr4 59729922 59730357 -124558305 + L2 LINE L2 2829 3291 -22 23 0 0 0 chr4 59730685 59730708 -124557954 + AT_rich Low_complexity Low_complexity 1 23 0 633 294 111 8 chr4 59730733 59730968 -124557694 - MIR SINE MIR -2 260 2 22 0 0 0 chr4 59731038 59731060 -124557602 + AT_rich Low_complexity Low_complexity 1 22 0 1735 160 0 24 chr4 59732065 59732358 -124556304 + AluSx SINE Alu 11 296 -16 213 132 0 0 chr4 59733444 59733482 -124555180 + (CA)n Simple_repeat Simple_repeat 2 39 0 195 42 0 0 chr4 59733682 59733706 -124554956 + (GA)n Simple_repeat Simple_repeat 1 24 0 204 211 0 0 chr4 59734479 59734517 -124554145 - MIR SINE MIR -3 259 222 222 255 333 0 chr4 59735017 59735119 -124553543 - MIR SINE MIR -27 235 100 351 253 21 0 chr4 59736599 59736694 -124551968 - MER58 DNA MER1_type -1 2419 2323 360 287 0 11 chr4 59736709 59736803 -124551859 - MER58 DNA MER1_type -2327 93 1 21 57 0 0 chr4 59736835 59736870 -124551792 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr4 59736974 59737004 -124551658 + AT_rich Low_complexity Low_complexity 1 30 0 31 0 0 0 chr4 59737145 59737176 -124551486 + AT_rich Low_complexity Low_complexity 1 31 0 465 298 182 33 chr4 59737572 59737935 -124550727 + MLT1J1 LTR MaLR 1 417 -29 24 32 0 0 chr4 59737954 59737985 -124550677 + AT_rich Low_complexity Low_complexity 1 31 0 570 235 0 30 chr4 59738421 59738553 -124550109 - MIR SINE MIR -106 156 29 34 72 0 0 chr4 59738626 59738695 -124549967 + AT_rich Low_complexity Low_complexity 1 69 0 333 0 0 0 chr4 59738970 59739007 -124549655 + (TG)n Simple_repeat Simple_repeat 2 38 0 27 49 0 0 chr4 59740794 59740835 -124547827 + AT_rich Low_complexity Low_complexity 1 41 0 673 270 51 62 chr4 59742997 59743258 -124545404 + MIR SINE MIR 5 262 0 704 203 128 11 chr4 59743444 59743631 -124545031 - MER3 DNA MER1_type 0 209 1 23 68 0 0 chr4 59743801 59743845 -124544817 + AT_rich Low_complexity Low_complexity 1 44 0 933 240 34 37 chr4 59744025 59744321 -124544341 - L1MA9 LINE L1 -38 6274 5980 22 56 0 0 chr4 59744396 59744432 -124544230 + AT_rich Low_complexity Low_complexity 1 36 0 2250 106 0 3 chr4 59746014 59746315 -124542347 - AluSg SINE Alu -10 300 1 14738 123 30 15 chr4 59747071 59749453 -124539209 - Tigger1 DNA MER2_type 0 2418 1 323 331 96 18 chr4 59749540 59749706 -124538956 + MIR SINE MIR 13 191 -71 22 70 0 0 chr4 59751433 59751476 -124537186 + AT_rich Low_complexity Low_complexity 1 43 0 801 108 0 8 chr4 59752971 59753091 -124535571 + AluSg/x SINE Alu 190 308 -1 480 307 104 48 chr4 59753355 59754511 -124534151 + L1M4 LINE L1 3702 4922 -1224 217 247 0 27 chr4 59754586 59754620 -124534042 + A-rich Low_complexity Low_complexity 5 38 -37 2336 98 0 0 chr4 59754620 59754926 -124533736 + AluSc SINE Alu 4 309 0 217 247 0 27 chr4 59754926 59754964 -124533698 + A-rich Low_complexity Low_complexity 38 75 0 28 29 0 0 chr4 59755040 59755075 -124533587 + AT_rich Low_complexity Low_complexity 1 35 0 287 305 123 35 chr4 59756534 59756737 -124531925 + L2 LINE L2 215 435 -2879 2263 107 0 0 chr4 59757065 59757356 -124531306 - AluSc SINE Alu -18 291 1 2081 118 0 31 chr4 59757391 59757714 -124530948 - AluSq SINE Alu 0 313 1 250 287 190 35 chr4 59757715 59757889 -124530773 + L2 LINE L2 1224 1424 -1890 673 225 235 5 chr4 59758385 59758585 -124530077 + MIR SINE MIR 3 248 -14 22 35 0 0 chr4 59758925 59758954 -124529708 + AT_rich Low_complexity Low_complexity 1 29 0 1348 245 40 47 chr4 59759376 59759825 -124528837 + MER39 LTR ERV1 260 705 -2 21 36 0 0 chr4 59760450 59760478 -124528184 + AT_rich Low_complexity Low_complexity 1 28 0 1747 254 70 59 chr4 59760538 59761320 -124527342 + MER21B LTR ERV1 13 803 -60 241 287 37 9 chr4 59761348 59761456 -124527206 - L1ME4a LINE L1 -69 6052 5942 31 76 0 0 chr4 59761534 59761600 -124527062 + AT_rich Low_complexity Low_complexity 1 66 0 1926 176 24 0 chr4 59761817 59762157 -124526505 - MER7A DNA MER2_type 0 346 1 321 176 48 133 chr4 59762176 59762341 -124526321 - L1MCa LINE L1 -4350 2076 1926 1486 249 137 44 chr4 59762530 59763165 -124525497 + L2 LINE L2 1517 2210 -1104 833 301 52 4 chr4 59763200 59763472 -124525190 + MER115 DNA AcHobo 295 579 -114 233 269 0 0 chr4 59763475 59763553 -124525109 - L1MC4 LINE L1 -1350 6692 6615 324 120 0 0 chr4 59763557 59763607 -124525055 + (TA)n Simple_repeat Simple_repeat 1 50 0 398 234 77 160 chr4 59763685 59764022 -124524640 + MLT1L LTR MaLR 110 521 -93 303 225 146 34 chr4 59764157 59764335 -124524327 + MER113 DNA MER1_type? 33 230 -291 449 263 150 16 chr4 59764385 59764632 -124524030 + L2 LINE L2 2215 2494 -820 1850 124 45 17 chr4 59764641 59764931 -124523731 + AluSq SINE Alu 1 298 -15 405 223 0 0 chr4 59764931 59765025 -124523637 + (TATG)n Simple_repeat Simple_repeat 3 96 0 22 0 0 0 chr4 59765139 59765161 -124523501 + AT_rich Low_complexity Low_complexity 1 22 0 485 311 42 21 chr4 59767381 59767574 -124521088 - MIR SINE MIR -55 207 11 41 48 0 0 chr4 59768491 59768553 -124520109 + AT_rich Low_complexity Low_complexity 1 62 0 553 327 88 20 chr4 59768657 59768963 -124519699 - L2 LINE L2 -452 2862 2536 22 70 0 0 chr4 59769401 59769444 -124519218 + AT_rich Low_complexity Low_complexity 1 43 0 1777 171 0 16 chr4 59769880 59770190 -124518472 + AluJo SINE Alu 1 305 -7 254 352 64 0 chr4 59770313 59770438 -124518224 - MIR SINE MIR -98 164 32 28 71 0 0 chr4 59770803 59770859 -124517803 + AT_rich Low_complexity Low_complexity 1 56 0 213 263 35 0 chr4 59771235 59771292 -124517370 - L2 LINE L2 -5 3308 3250 2118 116 0 10 chr4 59772087 59772398 -124516264 + AluSq SINE Alu 1 308 -5 388 254 35 133 chr4 59773517 59773773 -124514889 + MER46C DNA MER2_type 1 231 -107 605 276 13 6 chr4 59773773 59773929 -124514733 + MER46C DNA MER2_type 181 337 -1 317 314 88 6 chr4 59775624 59775760 -124512902 + L1ME3A LINE L1 5732 5884 -286 1698 178 31 0 chr4 59775760 59776052 -124512610 + AluJb SINE Alu 1 301 -11 317 314 88 6 chr4 59776052 59776074 -124512588 + L1ME3A LINE L1 5884 5903 -267 1591 201 0 13 chr4 59776512 59776825 -124511837 + AluJo SINE Alu 1 309 -3 273 135 0 0 chr4 59777228 59777280 -124511382 + (GA)n Simple_repeat Simple_repeat 1 52 0 2050 142 7 0 chr4 59777373 59777712 -124510950 + AluSx SINE Alu 1 341 0 333 0 0 0 chr4 59777762 59777799 -124510863 + (CA)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr4 59778054 59778075 -124510587 + AT_rich Low_complexity Low_complexity 1 21 0 275 106 64 11 chr4 59779006 59779100 -124509562 + (TA)n Simple_repeat Simple_repeat 2 100 0 466 136 0 11 chr4 59779629 59779717 -124508945 + L1PA13 LINE L1 6075 6161 -2 190 130 19 56 chr4 59779901 59779955 -124508707 + (CATA)n Simple_repeat Simple_repeat 3 54 0 351 0 0 0 chr4 59779972 59780011 -124508651 + (CA)n Simple_repeat Simple_repeat 2 40 0 356 280 187 40 chr4 59780023 59780173 -124508489 - MIR SINE MIR -29 179 8 2649 209 40 51 chr4 59780378 59781105 -124507557 - L1MB7 LINE L1 -10 6174 5456 22 88 0 0 chr4 59782621 59782678 -124505984 + AT_rich Low_complexity Low_complexity 1 57 0 2008 102 0 31 chr4 59783489 59783859 -124504803 + AluSp SINE Alu 1 361 0 632 200 91 6 chr4 59784802 59784967 -124503695 + L1MB7 LINE L1 6006 6184 0 315 384 23 0 chr4 59785730 59785863 -124502799 + MIR3 SINE MIR 46 181 -27 459 120 43 54 chr4 59786186 59786278 -124502384 + FLAM_A SINE Alu 34 124 -18 696 259 32 0 chr4 59786380 59786538 -124502124 - FRAM SINE Alu -3 163 1 239 255 0 0 chr4 59789410 59789457 -124499205 + T-rich Low_complexity Low_complexity 3 49 0 3964 133 61 73 chr4 59789854 59790223 -124498439 + L1MC1 LINE L1 5526 5898 -435 1855 176 0 3 chr4 59790223 59790535 -124498127 + AluJb SINE Alu 1 311 -1 3964 133 61 73 chr4 59790535 59790983 -124497679 + L1MC1 LINE L1 5898 6333 0 22 0 0 0 chr4 59791717 59791739 -124496923 + AT_rich Low_complexity Low_complexity 1 22 0 278 294 59 59 chr4 59791833 59791969 -124496693 + MER5B DNA MER1_type 27 162 -16 340 313 22 49 chr4 59792473 59792697 -124495965 + L1ME3A LINE L1 5735 5952 -218 1648 111 19 15 chr4 59792912 59793174 -124495488 + L1PA16 LINE L1 5900 6162 -4 216 135 0 0 chr4 59793732 59793769 -124494893 + (A)n Simple_repeat Simple_repeat 1 37 0 1744 116 34 8 chr4 59794094 59794362 -124494300 - THE1B LTR MaLR 0 364 90 246 276 8 57 chr4 59794362 59794485 -124494177 + L2 LINE L2 3023 3139 -174 2321 83 0 7 chr4 59794755 59795056 -124493606 + AluY SINE Alu 1 299 -12 295 167 0 0 chr4 59795496 59795544 -124493118 + L2 LINE L2 3262 3309 -4 206 42 0 0 chr4 59795860 59795884 -124492778 + (TG)n Simple_repeat Simple_repeat 2 25 0 298 308 19 29 chr4 59796109 59796213 -124492449 + L2 LINE L2 3205 3307 -6 1760 288 61 40 chr4 59796290 59797280 -124491382 + L2 LINE L2 2304 3311 -2 234 320 97 23 chr4 59797553 59797728 -124490934 + MIR SINE MIR 34 221 -41 1736 172 0 3 chr4 59798001 59798304 -124490358 + AluJb SINE Alu 1 302 -10 7555 31 1 0 chr4 59799450 59801144 -124487518 + L1PA3 LINE L1 4492 6155 0 465 277 59 40 chr4 59802018 59802220 -124486442 - MIR SINE MIR 0 262 57 287 287 46 0 chr4 59802225 59802312 -124486350 - MER81 DNA DNA 0 114 24 1575 174 146 34 chr4 59804103 59804459 -124484203 + MSTD LTR MaLR 1 396 0 21 36 0 0 chr4 59805107 59805135 -124483527 + AT_rich Low_complexity Low_complexity 1 28 0 314 247 0 10 chr4 59805384 59805480 -124483182 + Tigger5 DNA MER2_type 2 2323 0 850 190 25 6 chr4 59805641 59805799 -124482863 + AluJb SINE Alu 128 288 -24 31 0 0 0 chr4 59806037 59806068 -124482594 + AT_rich Low_complexity Low_complexity 1 31 0 221 409 11 11 chr4 59806628 59806721 -124481941 - MIR SINE MIR -92 116 24 2670 155 7 4 chr4 59807102 59807559 -124481103 + L1PA15 LINE L1 5708 6165 0 37 52 0 0 chr4 59807627 59807685 -124480977 + AT_rich Low_complexity Low_complexity 1 58 0 207 321 0 49 chr4 59807750 59807831 -124480831 + L2 LINE L2 3023 3099 -173 29 0 0 0 chr4 59807977 59808006 -124480656 + AT_rich Low_complexity Low_complexity 1 29 0 956 261 151 27 chr4 59808008 59808557 -124480105 + L1MC4 LINE L1 7266 7882 -160 1375 138 5 5 chr4 59808561 59808771 -124479891 - AluSg/x SINE Alu -17 295 86 258 260 40 60 chr4 59808773 59808923 -124479739 + L1MC4 LINE L1 7871 8017 -25 2081 97 4 4 chr4 59809805 59810113 -124478549 + AluSc SINE Alu 1 308 0 750 260 72 25 chr4 59810246 59810543 -124478119 + L2 LINE L2 2707 3022 -291 1853 139 69 28 chr4 59811994 59812354 -124476308 + THE1C LTR MaLR 1 375 0 423 0 0 0 chr4 59812388 59812435 -124476227 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 270 125 0 54 chr4 59813191 59813290 -124475372 + AluSp/q SINE Alu 249 303 0 6533 140 15 6 chr4 59813441 59815240 -124473422 + L1PA8A LINE L1 4317 6125 -6 1487 270 125 48 chr4 59815965 59816974 -124471688 - L2 LINE L2 -223 3090 1988 200 268 0 0 chr4 59817276 59817317 -124471345 - L2 LINE L2 -17 3255 3215 2116 127 0 10 chr4 59818318 59818617 -124470045 - AluJb SINE Alu -14 298 3 1720 176 7 3 chr4 59818927 59819229 -124469433 - AluSx SINE Alu -9 303 1 544 273 107 50 chr4 59819442 59819684 -124468978 + MER115 DNA AcHobo 428 683 -10 37 23 0 0 chr4 59819729 59819773 -124468889 + AT_rich Low_complexity Low_complexity 1 44 0 2244 176 40 5 chr4 59819831 59820275 -124468387 + MER65C LTR ERV1 2 461 0 195 358 52 45 chr4 59820328 59820462 -124468200 + L2 LINE L2 2905 3039 -233 2043 119 10 0 chr4 59821104 59821397 -124467265 - AluSx SINE Alu -16 296 1 597 263 0 53 chr4 59823198 59823426 -124465236 - L1MA9 LINE L1 -38 6274 6059 1458 245 124 1 chr4 59824014 59824849 -124463813 + L1ME2 LINE L1 4857 5801 -361 42858 30 21 2 chr4 59824850 59830885 -124457777 + L1HS LINE L1 1 6155 0 512 289 26 78 chr4 59830888 59831045 -124457617 + L1ME2 LINE L1 5793 5957 -207 2448 95 0 0 chr4 59831045 59831349 -124457313 + AluSg SINE Alu 1 304 -6 512 289 26 78 chr4 59831349 59831575 -124457087 + L1ME2 LINE L1 5957 6156 -8 225 0 0 0 chr4 59831925 59831950 -124456712 + (T)n Simple_repeat Simple_repeat 1 25 0 372 332 62 21 chr4 59831959 59832152 -124456510 + LTR67 LTR ERVL 24 224 -333 198 103 0 0 chr4 59832158 59832187 -124456475 + (CAG)n Simple_repeat Simple_repeat 1 29 0 325 289 7 67 chr4 59832211 59832346 -124456316 + LTR67 LTR ERVL 357 483 -74 716 160 0 8 chr4 59832756 59832898 -124455764 + FLAM_C SINE Alu 1 141 0 610 268 74 103 chr4 59833048 59833714 -124454948 - L2 LINE L2 -37 3276 2608 303 28 0 0 chr4 59833998 59834034 -124454628 + (TG)n Simple_repeat Simple_repeat 1 36 0 311 173 27 0 chr4 59834092 59834167 -124454495 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 26 64 0 0 chr4 59834382 59834429 -124454233 + AT_rich Low_complexity Low_complexity 1 47 0 256 237 0 17 chr4 59834612 59834671 -124453991 + GA-rich Low_complexity Low_complexity 3 60 0 29 28 0 0 chr4 59835169 59835205 -124453457 + AT_rich Low_complexity Low_complexity 1 36 0 207 0 0 0 chr4 59837520 59837543 -124451119 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 22 35 0 0 chr4 59837728 59837757 -124450905 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 59837813 59837841 -124450821 + AT_rich Low_complexity Low_complexity 1 28 0 4051 161 35 17 chr4 59837910 59838729 -124449933 + L1 LINE L1 3424 4257 -1889 288 222 0 0 chr4 59838749 59838821 -124449841 + (TATG)n Simple_repeat Simple_repeat 3 74 0 393 241 139 22 chr4 59839235 59839372 -124449290 + MIR SINE MIR 21 173 -89 227 247 82 0 chr4 59839986 59840059 -124448603 + MARNA DNA Mariner 259 337 -249 2395 76 0 7 chr4 59840619 59840920 -124447742 - AluY SINE Alu -12 299 1 239 317 52 78 chr4 59840946 59841176 -124447486 + L2 LINE L2 3004 3227 -86 1603 191 79 18 chr4 59841411 59841751 -124446911 - MLT1A1 LTR MaLR -2 363 3 35 0 0 0 chr4 59842751 59842786 -124445876 + AT_rich Low_complexity Low_complexity 1 35 0 204 40 0 0 chr4 59842897 59842922 -124445740 + (TAGA)n Simple_repeat Simple_repeat 1 25 0 180 290 113 0 chr4 59843411 59843473 -124445189 - L3 LINE CR1 -1350 227 159 337 231 119 22 chr4 59843606 59843740 -124444922 - L2 LINE L2 -4 3309 3163 889 295 36 0 chr4 59844085 59844309 -124444353 - MIR SINE MIR 0 262 31 1624 148 88 28 chr4 59844552 59844914 -124443748 + Tigger3(Golem) DNA MER2_type 1 3028 -1 2200 168 57 2 chr4 59844983 59845389 -124443273 + MSTA LTR MaLR 1 428 0 794 298 109 45 chr4 59845769 59846218 -124442444 - L2 LINE L2 0 3313 2836 * 2160 254 68 11 chr4 59846206 59846837 -124441825 - L2 LINE L2 -882 2432 1766 211 350 49 103 chr4 59846878 59847246 -124441416 - L2 LINE L2 -1 3271 2924 481 298 117 89 chr4 59847654 59848114 -124440548 + L2 LINE L2 2841 3313 0 481 153 153 9 chr4 59848200 59848311 -124440351 + L1MC3 LINE L1 7467 7593 -192 917 197 39 10 chr4 59848311 59848514 -124440148 + L1MC2 LINE L1 6136 6344 0 347 281 98 6 chr4 59848720 59848884 -124439778 - L1MC4a LINE L1 -1921 5887 5709 1949 114 46 0 chr4 59849109 59849390 -124439272 + AluSc SINE Alu 1 294 -15 723 301 122 34 chr4 59849860 59850302 -124438360 + MLT1J LTR MaLR 8 488 -23 1809 313 124 12 chr4 59852121 59853095 -124435567 + L2 LINE L2 1959 3034 -279 704 168 123 0 chr4 59853153 59853308 -124435354 + L1M4 LINE L1 5446 5619 -565 555 316 41 20 chr4 59853588 59853832 -124434830 + MIR SINE MIR 1 249 -13 2184 112 0 0 chr4 59853835 59854122 -124434540 - AluSx SINE Alu -4 308 22 538 254 0 24 chr4 59854332 59854458 -124434204 - FLAM_A SINE Alu -6 127 5 28 61 0 0 chr4 59854528 59854577 -124434085 + AT_rich Low_complexity Low_complexity 1 49 0 327 289 21 0 chr4 59855493 59855590 -124433072 + L1MC4 LINE L1 6611 6709 -1333 1326 219 36 15 chr4 59856193 59856526 -124432136 + MER39 LTR ERV1 367 706 -1 32 26 0 0 chr4 59859837 59859876 -124428786 + AT_rich Low_complexity Low_complexity 1 39 0 44 35 0 0 chr4 59860291 59860349 -124428313 + AT_rich Low_complexity Low_complexity 1 58 0 369 0 0 0 chr4 59861011 59861052 -124427610 + (CA)n Simple_repeat Simple_repeat 2 42 0 2115 107 0 35 chr4 59862189 59862499 -124426163 - AluSq SINE Alu -14 299 1 195 42 0 0 chr4 59862500 59862524 -124426138 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 968 187 124 62 chr4 59862525 59862782 -124425880 - AluJo SINE Alu -29 283 11 1975 132 57 15 chr4 59862835 59863168 -124425494 + MER41C LTR ERV1 1 347 -207 356 100 0 50 chr4 59863168 59863248 -124425414 + (TA)n Simple_repeat Simple_repeat 1 76 0 2127 106 7 0 chr4 59863257 59863540 -124425122 + AluSg SINE Alu 1 285 -25 929 166 171 0 chr4 59863569 59863750 -124424912 + MER41C LTR ERV1 343 554 0 315 321 91 40 chr4 59864087 59864339 -124424323 + L1MC/D LINE L1 5470 5734 -436 29 0 0 0 chr4 59864380 59864409 -124424253 + AT_rich Low_complexity Low_complexity 1 29 0 515 156 0 11 chr4 59864411 59864501 -124424161 - HY4 scRNA scRNA -4 89 1 237 227 102 23 chr4 59864501 59864589 -124424073 + L1MC/D LINE L1 5786 5880 -1928 26 82 0 0 chr4 59864701 59864762 -124423900 + AT_rich Low_complexity Low_complexity 1 61 0 2032 155 0 0 chr4 59864898 59865201 -124423461 - AluSx SINE Alu -9 303 1 808 159 8 0 chr4 59866366 59866492 -124422170 + FLAM_C SINE Alu 1 127 -16 1323 209 36 22 chr4 59866745 59867022 -124421640 + AluJb SINE Alu 1 281 -31 26 88 0 0 chr4 59867028 59867096 -124421566 + AT_rich Low_complexity Low_complexity 1 68 0 749 182 98 0 chr4 59867132 59867275 -124421387 - FRAM SINE Alu 0 176 20 198 0 0 0 chr4 59867583 59867605 -124421057 + (TA)n Simple_repeat Simple_repeat 2 23 0 2249 113 3 0 chr4 59867605 59867915 -124420747 - AluSx SINE Alu -1 311 1 1513 193 7 33 chr4 59868144 59868450 -124420212 - AluJo SINE Alu -13 299 2 319 145 79 26 chr4 59868489 59868565 -124420097 - MLT1J LTR MaLR -8 503 424 295 184 0 0 chr4 59868721 59868786 -124419876 - Alu SINE Alu -253 47 1 873 86 0 0 chr4 59868788 59868904 -124419758 - THE1B-int LTR MaLR -1464 116 1 2260 116 8 52 chr4 59868904 59869124 -124419538 - THE1B LTR MaLR 0 364 167 2296 86 10 0 chr4 59869124 59869425 -124419237 + AluY SINE Alu 1 304 -7 2260 116 8 52 chr4 59869425 59869585 -124419077 - THE1B LTR MaLR -197 167 1 657 171 0 0 chr4 59869967 59870072 -124418590 - FRAM SINE Alu -52 124 20 234 296 103 69 chr4 59870835 59871038 -124417624 - L2 LINE L2 -259 3054 2845 186 174 0 0 chr4 59872915 59872961 -124415701 + (TATG)n Simple_repeat Simple_repeat 2 47 0 218 130 0 37 chr4 59872988 59873042 -124415620 + (TCCA)n Simple_repeat Simple_repeat 1 52 0 203 229 0 0 chr4 59873050 59873085 -124415577 + polypyrimidine Low_complexity Low_complexity 2 36 0 219 250 73 0 chr4 59873567 59873635 -124415027 - MIR SINE MIR -117 145 73 2007 188 14 8 chr4 59873711 59874032 -124414630 + MLT1A1 LTR MaLR 5 330 -35 183 42 0 0 chr4 59874032 59874056 -124414606 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2007 188 14 8 chr4 59874056 59874091 -124414571 + MLT1A1 LTR MaLR 330 363 -2 247 291 13 35 chr4 59874371 59874475 -124414187 + GA-rich Low_complexity Low_complexity 5 110 -115 2768 148 32 92 chr4 59874475 59874799 -124413863 + LTR9 LTR ERV1 1 268 -344 1908 148 10 3 chr4 59874799 59875089 -124413573 + AluSx SINE Alu 5 296 -16 2768 148 32 92 chr4 59875089 59875415 -124413247 + LTR9 LTR ERV1 268 612 0 247 291 13 35 chr4 59875415 59875457 -124413205 + GA-rich Low_complexity Low_complexity 110 225 0 861 287 115 20 chr4 59875465 59875908 -124412754 + LTR33 LTR ERVL 1 485 -36 29 0 0 0 chr4 59877642 59877671 -124410991 + AT_rich Low_complexity Low_complexity 1 29 0 2182 100 0 0 chr4 59878211 59878526 -124410136 - AluSg SINE Alu 0 315 1 275 329 153 33 chr4 59878743 59879017 -124409645 - L2 LINE L2 -457 2857 2551 232 320 10 21 chr4 59879109 59879206 -124409456 - MIR SINE MIR -50 212 117 2197 90 20 13 chr4 59879701 59880002 -124408660 + AluSx SINE Alu 1 303 -9 470 196 22 14 chr4 59880543 59880681 -124407981 + GA-rich Low_complexity Low_complexity 2 140 0 1796 196 20 51 chr4 59882961 59883370 -124405292 + MSTD LTR MaLR 1 396 0 403 338 92 34 chr4 59884134 59884529 -124404133 + L2 LINE L2 2653 3070 -202 2235 123 0 0 chr4 59885838 59886147 -124402515 - AluSc SINE Alu 0 309 1 318 299 132 23 chr4 59886171 59886345 -124402317 - MIR SINE MIR -64 198 6 968 144 56 6 chr4 59886547 59886669 -124401993 + AluSq SINE Alu 1 134 -179 210 37 0 0 chr4 59886669 59886696 -124401966 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 968 144 56 6 chr4 59886696 59886733 -124401929 + AluSq SINE Alu 134 168 -145 1904 119 3 21 chr4 59886765 59887050 -124401612 + AluSx SINE Alu 1 280 -32 333 0 0 0 chr4 59887050 59887087 -124401575 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 521 299 112 13 chr4 59887790 59888014 -124400648 - MIR SINE MIR -16 246 1 742 257 11 6 chr4 59888134 59888313 -124400349 - MIR SINE MIR -13 249 70 1061 133 6 0 chr4 59888353 59888518 -124400144 - AluSp SINE Alu 0 313 148 796 135 16 0 chr4 59888518 59888644 -124400018 - AluSg/x SINE Alu -112 200 73 301 308 67 10 chr4 59888862 59888966 -124399696 - L2 LINE L2 0 3313 3204 502 213 7 29 chr4 59889204 59889340 -124399322 - MER104 DNA Tc2 -45 135 3 568 231 71 39 chr4 59889386 59889568 -124399094 + MIR SINE MIR 65 252 -10 876 259 113 64 chr4 59889594 59889859 -124398803 - L2 LINE L2 0 3313 3062 1968 133 3 35 chr4 59889859 59890175 -124398487 - AluSx SINE Alu -6 306 1 876 259 113 64 chr4 59890175 59890556 -124398106 - L2 LINE L2 -251 3062 2649 189 213 0 21 chr4 59890698 59890745 -124397917 + L2 LINE L2 3227 3272 0 2226 93 3 0 chr4 59891321 59891622 -124397040 + AluSx SINE Alu 1 302 -10 1794 161 0 21 chr4 59892973 59893264 -124395398 + AluJo SINE Alu 1 285 -27 1772 159 107 0 chr4 59893374 59893700 -124394962 + MER46B DNA MER2_type 1 236 0 280 306 36 18 chr4 59894222 59894333 -124394329 + L2 LINE L2 3200 3312 -1 408 245 176 6 chr4 59894489 59894648 -124394014 - L1MD3 LINE L1 -16 7979 7794 2122 158 0 49 chr4 59894648 59894865 -124393797 + MLT1B LTR MaLR 1 190 -200 1456 144 65 94 chr4 59894865 59895247 -124393415 - THE1C LTR MaLR -4 371 1 2122 158 0 49 chr4 59895247 59895439 -124393223 + MLT1B LTR MaLR 190 390 0 1419 206 63 9 chr4 59895460 59895775 -124392887 - L1MD2 LINE L1 -203 6156 5825 192 77 0 0 chr4 59896063 59896089 -124392573 + (T)n Simple_repeat Simple_repeat 1 26 0 1255 20 7 0 chr4 59896089 59896237 -124392425 - MER41A LTR ERV1 -86 468 320 266 50 25 0 chr4 59896237 59896277 -124392385 + (TTTTA)n Simple_repeat Simple_repeat 1 41 0 238 255 0 20 chr4 59896758 59896809 -124391853 + L2 LINE L2 3208 3257 -15 799 163 0 15 chr4 59896960 59897095 -124391567 - FLAM_C SINE Alu 0 133 1 2893 9 0 0 chr4 59897891 59898209 -124390453 + AluYb8 SINE Alu 1 318 0 1728 230 153 17 chr4 59898440 59898950 -124389712 + MLT1E LTR MaLR 4 583 -7 919 173 26 78 chr4 59899027 59899258 -124389404 - MER20 DNA MER1_type 0 219 1 25 31 0 0 chr4 59900424 59900456 -124388206 + AT_rich Low_complexity Low_complexity 1 32 0 237 239 0 0 chr4 59900572 59900618 -124388044 + GA-rich Low_complexity Low_complexity 3 48 0 441 297 262 3 chr4 59900880 59901170 -124387492 - L2 LINE L2 -14 3299 2935 4322 178 30 27 chr4 59901211 59901705 -124386957 - L1MB8 LINE L1 -5 6173 5682 2413 71 0 0 chr4 59901705 59902002 -124386660 - AluY SINE Alu -14 297 1 4322 178 30 27 chr4 59902002 59902823 -124385839 - L1MB8 LINE L1 -496 5682 4861 507 180 16 8 chr4 59902938 59903060 -124385602 + CT-rich Low_complexity Low_complexity 2 124 0 1348 239 52 6 chr4 59903238 59903565 -124385097 - L1MB8 LINE L1 -319 5859 5518 252 346 46 8 chr4 59904122 59904252 -124384410 - MIR3 SINE MIR -3 205 71 816 304 0 54 chr4 59904488 59904764 -124383898 + MIR SINE MIR 2 262 0 315 314 96 55 chr4 59904806 59905026 -124383636 - L2 LINE L2 -43 3270 3042 225 0 0 0 chr4 59905822 59905847 -124382815 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 249 331 109 44 chr4 59906283 59906621 -124382041 - L2 LINE L2 -19 3253 2894 582 228 111 21 chr4 59906697 59906886 -124381776 - L1MC5 LINE L1 -97 7864 7659 21 57 0 0 chr4 59907223 59907258 -124381404 + AT_rich Low_complexity Low_complexity 1 35 0 199 320 80 13 chr4 59907361 59907436 -124381226 - L2 LINE L2 0 3272 3193 266 269 48 7 chr4 59908083 59908228 -124380434 + (TA)n Simple_repeat Simple_repeat 1 151 0 2058 74 48 0 chr4 59909338 59909658 -124379004 + AluY SINE Alu 1 333 0 436 330 53 30 chr4 59912066 59912330 -124376332 + MLT1K LTR MaLR 317 586 -2 281 177 25 38 chr4 59914283 59914362 -124374300 + (TA)n Simple_repeat Simple_repeat 2 79 0 426 302 118 24 chr4 59914545 59914757 -124373905 + MIR SINE MIR 22 253 -9 261 299 103 8 chr4 59914913 59915030 -124373632 + MIR SINE MIR 45 172 -90 509 200 0 0 chr4 59915211 59915291 -124373371 + MER58 DNA MER1_type 2341 2420 0 191 343 0 0 chr4 59915291 59915358 -124373304 + MIR SINE MIR 164 230 -32 363 44 0 0 chr4 59915469 59915514 -124373148 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 399 44 15 29 chr4 59915532 59915600 -124373062 + (TA)n Simple_repeat Simple_repeat 1 67 0 1806 153 11 3 chr4 59915664 59915994 -124372668 + AluSx SINE Alu 1 332 0 231 316 60 15 chr4 59916996 59917129 -124371533 - MIR SINE MIR -11 251 113 2020 126 0 0 chr4 59918449 59918734 -124369928 + AluSg SINE Alu 11 295 -15 1289 180 65 12 chr4 59919176 59919421 -124369241 + AluJo SINE Alu 12 269 -43 1004 87 0 0 chr4 59920832 59921001 -124367661 + AluSc SINE Alu 155 323 0 10279 89 35 1 chr4 59921001 59922407 -124366255 + THE1B-int LTR MaLR 128 1580 0 2559 94 5 24 chr4 59922407 59922778 -124365884 + THE1B LTR MaLR 1 364 0 1328 130 35 9 chr4 59922888 59923119 -124365543 + Tigger7 DNA MER2_type 2254 2490 -1 189 0 0 0 chr4 59924167 59924188 -124364474 + (CA)n Simple_repeat Simple_repeat 2 22 0 4294 118 19 4 chr4 59924708 59925374 -124363288 - L1PBa LINE L1 -4939 1913 1163 726 72 0 0 chr4 59925368 59925465 -124363197 + L1P5 LINE L1 5695 5791 -360 * 386 198 95 40 chr4 59925619 59925745 -124362917 + L1ME1 LINE L1 6024 6156 -10 22 56 0 0 chr4 59926614 59926650 -124362012 + AT_rich Low_complexity Low_complexity 1 36 0 569 167 0 0 chr4 59927465 59927561 -124361101 - AluSg/x SINE Alu -43 267 172 272 250 13 13 chr4 59928340 59928416 -124360246 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 752 296 39 0 chr4 59928434 59928637 -124360025 - MIR SINE MIR -23 239 29 540 291 33 74 chr4 59928641 59928940 -124359722 - L3 LINE CR1 -366 1211 925 261 290 38 53 chr4 59928939 59929070 -124359592 + L2 LINE L2 3184 3312 -1 * 976 312 36 41 chr4 59929145 59929480 -124359182 - L3 LINE CR1 -737 840 506 306 208 39 0 chr4 59929480 59929557 -124359105 - MER116 DNA Mariner 0 80 1 976 312 36 41 chr4 59929557 59929638 -124359024 - L3 LINE CR1 -1071 506 426 360 64 0 0 chr4 59929893 59929940 -124358722 + (TC)n Simple_repeat Simple_repeat 1 47 0 2184 87 9 62 chr4 59929940 59930263 -124358399 - AluSp SINE Alu -5 308 3 2772 22 0 0 chr4 59930268 59930585 -124358077 - AluYb8 SINE Alu -1 317 1 200 263 0 0 chr4 59930601 59930639 -124358023 + L2 LINE L2 3221 3258 -14 1646 156 7 49 chr4 59930658 59930966 -124357696 + AluJb SINE Alu 1 295 -17 218 316 143 48 chr4 59931151 59931360 -124357302 - L2 LINE L2 -528 2786 2558 865 214 73 5 chr4 59932139 59932359 -124356303 + MER39 LTR ERV1 473 707 0 273 57 0 0 chr4 59932361 59932396 -124356266 + (TA)n Simple_repeat Simple_repeat 1 35 0 1927 140 0 3 chr4 59932396 59932682 -124355980 - AluJb SINE Alu -24 288 4 267 325 156 19 chr4 59933107 59933261 -124355401 - L2 LINE L2 -2892 422 248 2837 10 0 0 chr4 59936365 59936673 -124351989 + AluYa5 SINE Alu 1 308 -3 187 254 18 36 chr4 59936911 59936966 -124351696 + MER5A DNA MER1_type 85 138 -51 815 198 34 17 chr4 59937074 59937251 -124351411 - MER5A DNA MER1_type 0 189 10 1057 291 57 45 chr4 59937587 59937650 -124351012 + MLT1G LTR MaLR 5 66 -524 458 281 0 0 chr4 59937650 59937764 -124350898 - MER81 DNA DNA 0 114 1 1057 291 57 45 chr4 59937764 59938216 -124350446 + MLT1G LTR MaLR 66 493 -97 295 284 95 0 chr4 59938527 59938643 -124350019 - MIR SINE MIR -6 256 130 470 310 73 35 chr4 59938941 59939173 -124349489 + MIR SINE MIR 2 242 -20 282 252 99 45 chr4 59939699 59939810 -124348852 + MER5B DNA MER1_type 3 119 -59 1411 211 14 57 chr4 59941082 59941265 -124347397 + MER58B DNA MER1_type 1 163 -2257 2148 117 0 0 chr4 59941265 59941563 -124347099 - AluSg SINE Alu -12 298 1 1411 211 14 57 chr4 59941563 59941729 -124346933 + MER58B DNA MER1_type 163 335 -6 250 285 32 49 chr4 59941734 59941857 -124346805 + L2 LINE L2 2271 2391 -923 751 200 97 6 chr4 59942023 59942188 -124346474 + FRAM SINE Alu 1 176 0 452 99 14 0 chr4 59942188 59942259 -124346403 + (GGAA)n Simple_repeat Simple_repeat 1 72 0 635 190 0 9 chr4 59942672 59942965 -124345697 + FLAM_C SINE Alu 1 292 0 239 135 0 0 chr4 59942965 59943002 -124345660 + (GGGA)n Simple_repeat Simple_repeat 2 38 0 1943 122 58 3 chr4 59943004 59943298 -124345364 + AluSx SINE Alu 1 310 -2 458 125 12 0 chr4 59943298 59943378 -124345284 + (GA)n Simple_repeat Simple_repeat 1 81 0 366 165 10 29 chr4 59943356 59943424 -124345238 + GA-rich Low_complexity Low_complexity 4 71 -33 * 261 0 0 0 chr4 59943424 59943453 -124345209 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 366 165 10 29 chr4 59943453 59943487 -124345175 + GA-rich Low_complexity Low_complexity 71 104 0 505 150 16 24 chr4 59943511 59943638 -124345024 + GA-rich Low_complexity Low_complexity 3 128 0 753 188 0 0 chr4 59943694 59943822 -124344840 - FLAM_C SINE Alu -5 128 1 181 231 0 0 chr4 59944091 59944130 -124344532 + L2 LINE L2 3266 3304 -9 2856 184 118 93 chr4 59944648 59945199 -124343463 - L1MC3 LINE L1 -40 7745 7080 391 179 64 0 chr4 59945199 59945277 -124343385 - MLT1F1 LTR MaLR -450 117 35 2856 184 118 93 chr4 59945277 59945662 -124343000 - L1MC3 LINE L1 -705 7080 6706 649 175 30 167 chr4 59946538 59946772 -124341890 + MER21B LTR ERV1 1 202 -661 551 111 0 40 chr4 59946789 59946888 -124341774 + AluSg/x SINE Alu 201 295 -14 342 0 0 0 chr4 59947059 59947097 -124341565 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 2067 128 0 0 chr4 59947293 59947633 -124341029 + AluSx SINE Alu 1 340 0 1864 167 0 10 chr4 59948292 59948603 -124340059 - AluJb SINE Alu -4 308 1 352 293 75 27 chr4 59949611 59949758 -124338904 + MIR SINE MIR 101 254 -8 22 0 0 0 chr4 59950413 59950435 -124338227 + AT_rich Low_complexity Low_complexity 1 22 0 1465 231 62 18 chr4 59951264 59951653 -124337009 + MLT1C LTR MaLR 1 406 -61 371 27 118 0 chr4 59951790 59951900 -124336762 + (TA)n Simple_repeat Simple_repeat 2 124 0 290 264 40 63 chr4 59952070 59952244 -124336418 + L1ME LINE L1 5496 5665 -456 1851 136 22 95 chr4 59952368 59952864 -124335798 + MSTA LTR MaLR 1 428 0 1717 188 0 7 chr4 59953150 59953448 -124335214 - AluJo SINE Alu -16 296 1 1482 187 0 52 chr4 59953815 59954125 -124334537 + AluJo SINE Alu 1 294 -18 183 100 0 0 chr4 59954142 59954172 -124334490 + (TAAAAA)n Simple_repeat Simple_repeat 5 34 0 216 0 0 0 chr4 59954883 59954907 -124333755 + (TA)n Simple_repeat Simple_repeat 2 25 0 2362 94 3 0 chr4 59954908 59955215 -124333447 - AluSx SINE Alu -4 308 1 1684 170 7 33 chr4 59955444 59955750 -124332912 - AluJb SINE Alu -13 299 2 385 164 135 19 chr4 59955790 59955894 -124332768 - MLT1J LTR MaLR -9 502 387 766 261 136 18 chr4 59955942 59956222 -124332440 - MLT1J LTR MaLR -198 313 1 1922 136 7 0 chr4 59959101 59959395 -124329267 + AluSx SINE Alu 1 296 -16 1432 179 0 69 chr4 59959497 59959815 -124328847 - AluJo SINE Alu -1 311 16 1684 190 0 19 chr4 59959985 59960296 -124328366 + AluJb SINE Alu 1 305 -7 356 218 64 137 chr4 59962052 59962271 -124326391 + MER34 LTR ERV1 434 537 -5 309 250 125 0 chr4 59962348 59962436 -124326226 + MIR SINE MIR 56 154 -108 253 125 0 0 chr4 59963367 59963407 -124325255 - HUERS-P1 LTR ERV1 -4709 1554 1515 * 7835 122 15 28 chr4 59963397 59964936 -124323726 + HUERS-P1 LTR ERV1 1489 6263 0 4537 32 23 12 chr4 59964949 59965515 -124323147 + L1PA4 LINE L1 5584 6155 0 4751 95 33 10 chr4 59965521 59966196 -124322466 + LTR8 LTR ERV1 2 691 0 669 137 216 0 chr4 59966538 59966677 -124321985 + FAM SINE Alu 1 49 0 853 161 207 19 chr4 59966864 59967191 -124321471 + LTR48 LTR ERV1 1 418 -369 653 217 104 36 chr4 59967194 59967443 -124321219 + LTR48 LTR ERV1 522 787 0 288 0 0 0 chr4 59968036 59968068 -124320594 + (T)n Simple_repeat Simple_repeat 1 32 0 2024 110 11 0 chr4 59968289 59968600 -124320062 + AluSx SINE Alu 1 314 0 182 36 0 36 chr4 59969080 59969108 -124319554 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 570 204 9 0 chr4 59969123 59969231 -124319431 - FRAM SINE Alu -39 137 29 1209 155 24 10 chr4 59969256 59969462 -124319200 + AluJb SINE Alu 87 295 -17 784 176 0 8 chr4 59969462 59969593 -124319069 - AluJo/FLAM SINE Alu -172 130 1 523 92 82 31 chr4 59969783 59969881 -124318781 - L1MB1 LINE L1 -8 6160 6058 33 0 0 0 chr4 59971068 59971101 -124317561 + AT_rich Low_complexity Low_complexity 1 33 0 1324 60 0 0 chr4 59972550 59972716 -124315946 - L1PA5 LINE L1 -2 6152 5987 394 267 95 41 chr4 59972752 59973147 -124315515 + L2 LINE L2 2653 3313 0 282 302 265 30 chr4 59973167 59973435 -124315227 + L2 LINE L2 2921 3251 -62 21 0 0 0 chr4 59973932 59973953 -124314709 + AT_rich Low_complexity Low_complexity 1 21 0 2162 103 0 3 chr4 59975406 59975698 -124312964 - AluY SINE Alu -20 291 1 630 255 29 39 chr4 59975789 59975993 -124312669 + MIR SINE MIR 45 246 -16 1216 97 0 0 chr4 59977946 59978148 -124310514 + AluSp SINE Alu 132 333 0 23 0 0 0 chr4 59980382 59980405 -124308257 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr4 59980579 59980601 -124308061 + AT_rich Low_complexity Low_complexity 1 22 0 892 156 0 0 chr4 59980823 59980958 -124307704 + MSTA LTR MaLR 1 135 -293 3458 107 53 8 chr4 59980991 59981497 -124307165 + THE1B-int LTR MaLR 1050 1578 -2 2216 121 39 39 chr4 59981499 59981863 -124306799 + THE1B LTR MaLR 1 364 0 3119 198 154 38 chr4 59981863 59982777 -124305885 - MER52A LTR ERV1 -612 1143 12 372 269 85 15 chr4 59982921 59983051 -124305611 + MLT1H LTR MaLR 39 177 -372 273 156 103 4 chr4 59983176 59983258 -124305404 + MLT1F LTR MaLR 431 519 -30 1369 186 26 73 chr4 59983488 59983869 -124304793 - MLT1A1 LTR MaLR -2 363 1 236 313 147 67 chr4 59983875 59984291 -124304371 + L2 LINE L2 2431 2879 -435 187 369 81 13 chr4 59984457 59984606 -124304056 - L2 LINE L2 -25 3288 3130 22 106 0 0 chr4 59985099 59985184 -124303478 + AT_rich Low_complexity Low_complexity 1 85 0 773 236 67 58 chr4 59985847 59986054 -124302608 - MER5C DNA MER1_type 0 324 112 2065 121 3 3 chr4 59986054 59986365 -124302297 - AluSg SINE Alu 0 310 1 773 236 67 58 chr4 59986365 59986470 -124302192 - MER5C DNA MER1_type -212 112 9 1137 154 40 32 chr4 59987836 59988089 -124300573 - L1MB8 LINE L1 -23 6155 5901 1281 178 4 20 chr4 60088103 60088350 -124200312 + AluSq SINE Alu 71 313 0 222 308 0 0 chr4 60089105 60089170 -124199492 + CT-rich Low_complexity Low_complexity 2 66 0 555 225 80 0 chr4 60089900 60090051 -124198611 - MER103 DNA DNA -2 164 2 209 33 33 0 chr4 60090362 60090392 -124198270 + (TTTTC)n Simple_repeat Simple_repeat 5 35 0 1096 68 0 0 chr4 60090392 60090524 -124198138 - AluY SINE Alu -179 132 1 259 272 87 39 chr4 60091608 60091711 -124196951 - MIR SINE MIR -60 202 95 209 281 86 72 chr4 60091881 60092020 -124196642 - MIR SINE MIR -60 202 62 201 288 86 72 chr4 60092158 60092297 -124196365 - MIR SINE MIR -60 202 62 209 281 86 72 chr4 60092435 60092574 -124196088 - MIR SINE MIR -60 202 62 304 221 23 23 chr4 60093060 60093146 -124195516 - MLT1J1 LTR MaLR -7 439 354 287 243 111 55 chr4 60093193 60093374 -124195288 - MLT1J2 LTR MaLR -168 282 92 1526 209 14 0 chr4 60093676 60093959 -124194703 + AluJo SINE Alu 1 287 -25 1925 144 0 0 chr4 60095497 60095774 -124192888 + AluSx SINE Alu 1 277 -35 23 54 0 0 chr4 60096063 60096100 -124192562 + AT_rich Low_complexity Low_complexity 1 37 0 728 252 31 63 chr4 60096693 60096979 -124191683 + L2 LINE L2 3001 3277 -36 22 0 0 0 chr4 60097265 60097287 -124191375 + AT_rich Low_complexity Low_complexity 1 22 0 294 73 0 0 chr4 60097612 60097653 -124191009 + (TG)n Simple_repeat Simple_repeat 2 42 0 184 59 59 0 chr4 60097805 60097839 -124190823 + (TATATG)n Simple_repeat Simple_repeat 1 36 0 736 176 0 22 chr4 60098854 60098990 -124189672 - FLAM_C SINE Alu 0 133 1 21 0 0 0 chr4 60099056 60099077 -124189585 + AT_rich Low_complexity Low_complexity 1 21 0 397 251 118 124 chr4 60100407 60100752 -124187910 - MLT1H LTR MaLR 0 549 207 1537 204 7 10 chr4 60100752 60101051 -124187611 - AluJb SINE Alu -12 300 3 397 251 118 124 chr4 60101051 60101255 -124187407 - MLT1H LTR MaLR -342 207 3 288 0 0 0 chr4 60101552 60101584 -124187078 + (CA)n Simple_repeat Simple_repeat 2 33 0 618 302 20 37 chr4 60102180 60102425 -124186237 + HAL1 LINE L1 2 242 -2265 2441 72 0 0 chr4 60102670 60102974 -124185688 - AluSc SINE Alu -5 304 1 23 33 0 0 chr4 60103529 60103559 -124185103 + AT_rich Low_complexity Low_complexity 1 30 0 682 332 36 8 chr4 60104633 60104886 -124183776 - MIR SINE MIR 0 262 3 230 348 11 0 chr4 60105671 60105760 -124182902 - L2 LINE L2 -1 3271 3182 186 152 0 0 chr4 60106504 60106537 -124182125 - L2 LINE L2 -4 3309 3277 922 178 30 30 chr4 60106539 60106741 -124181921 + MER105 DNA DNA 2 203 -1 390 250 11 0 chr4 60107190 60107278 -124181384 - L2 LINE L2 -6 3307 3219 213 309 0 0 chr4 60107458 60107526 -124181136 + (TA)n Simple_repeat Simple_repeat 2 69 0 191 315 40 60 chr4 60108773 60108922 -124179740 + MIR SINE MIR 100 245 -17 244 152 0 0 chr4 60108984 60109030 -124179632 + MADE1 DNA Mariner 1 46 -34 2051 97 0 24 chr4 60109360 60109648 -124179014 + AluSx SINE Alu 1 281 -31 224 54 54 0 chr4 60109651 60109688 -124178974 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 557 305 20 35 chr4 60110155 60110355 -124178307 - MIR SINE MIR -64 198 2 1524 101 5 0 chr4 60111465 60111672 -124176990 + AluSg SINE Alu 1 208 -102 1829 137 3 23 chr4 60111803 60112103 -124176559 - AluJo SINE Alu -18 294 1 351 309 54 7 chr4 60112406 60112555 -124176107 - L2 LINE L2 -255 3017 2862 2613 148 29 20 chr4 60113388 60113880 -124174782 - L1MA6 LINE L1 -1 6299 5804 1136 215 74 11 chr4 60114072 60114342 -124174320 + MLT1D LTR MaLR 1 287 -218 21 82 0 0 chr4 60114360 60114409 -124174253 + AT_rich Low_complexity Low_complexity 1 49 0 563 329 75 9 chr4 60115222 60115450 -124173212 + MIR SINE MIR 3 245 -17 457 169 0 11 chr4 60115841 60115930 -124172732 - AluJ/FRAM SINE Alu -9 303 216 183 349 48 48 chr4 60116297 60116380 -124172282 - MIR3 SINE MIR -48 160 78 1595 169 37 0 chr4 60117046 60117319 -124171343 + AluJo SINE Alu 1 283 -29 21 36 0 0 chr4 60117319 60117347 -124171315 + AT_rich Low_complexity Low_complexity 1 28 0 299 301 29 10 chr4 60118425 60118528 -124170134 + MIR SINE MIR 158 262 0 319 299 125 21 chr4 60119021 60119165 -124169497 - MIR SINE MIR -14 248 90 1675 179 21 3 chr4 60119328 60119619 -124169043 - AluSx SINE Alu -14 298 3 22 0 0 0 chr4 60119984 60120006 -124168656 + AT_rich Low_complexity Low_complexity 1 22 0 225 0 0 0 chr4 60121063 60121088 -124167574 + (T)n Simple_repeat Simple_repeat 1 25 0 295 315 27 9 chr4 60121088 60121199 -124167463 - AluSq/x SINE Alu -169 133 21 761 305 38 0 chr4 60121224 60121516 -124167146 - Tigger1 DNA MER2_type -1 2417 2115 760 146 0 0 chr4 60121718 60121841 -124166821 - FLAM_C SINE Alu 0 143 21 11026 142 28 17 chr4 60121866 60123730 -124164932 - Tigger1 DNA MER2_type -1 2417 533 309 264 42 62 chr4 60124114 60124258 -124164404 + L1ME1 LINE L1 332 472 -5951 795 284 38 33 chr4 60124817 60124871 -124163791 + L1ME1 LINE L1 1128 1180 -5243 1720 139 28 129 chr4 60124871 60125304 -124163358 - MLT1B LTR MaLR 0 390 2 795 284 38 33 chr4 60125304 60125615 -124163047 + L1ME1 LINE L1 1180 1495 -4928 582 228 25 174 chr4 60125618 60126298 -124162364 + L1ME1 LINE L1 2239 2817 -4305 1549 170 64 40 chr4 60126302 60126669 -124161993 + MLT1C LTR MaLR 1 388 -2 1930 127 11 0 chr4 60126694 60126970 -124161692 + AluSx SINE Alu 1 279 -33 304 239 80 69 chr4 60126989 60127177 -124161485 + L1ME1 LINE L1 2831 3020 -4102 1493 241 6 0 chr4 60127189 60127525 -124161137 + L1ME1 LINE L1 6376 6713 -246 356 258 129 31 chr4 60127531 60127725 -124160937 + L1ME1 LINE L1 6748 6960 -1 302 264 63 69 chr4 60129721 60129880 -124158782 + L2 LINE L2 3144 3301 -12 340 227 27 93 chr4 60130314 60130464 -124158198 + MIR SINE MIR 97 236 -26 22532 28 3 0 chr4 60130483 60134703 -124153959 - L1PA3 LINE L1 0 6155 1946 189 0 0 0 chr4 60135818 60135839 -124152823 + (TTTTTA)n Simple_repeat Simple_repeat 4 24 0 618 47 12 0 chr4 60135847 60135932 -124152730 - L1PA3 LINE L1 0 6155 6070 229 270 81 0 chr4 60136073 60136147 -124152515 + L2 LINE L2 3234 3313 0 2272 48 0 0 chr4 60136187 60136458 -124152204 - AluY SINE Alu -7 304 34 2151 81 10 13 chr4 60136943 60137253 -124151409 - L1PA7 LINE L1 -5 6149 5841 2060 124 0 3 chr4 60137514 60137832 -124150830 - AluSg SINE Alu 0 317 1 245 333 0 0 chr4 60138410 60138476 -124150186 - MIR SINE MIR -150 112 47 1230 122 0 0 chr4 60139004 60139176 -124149486 - AluSg/x SINE Alu -12 300 129 187 298 173 24 chr4 60139895 60140063 -124148599 - L2 LINE L2 -559 2755 2563 1943 152 3 0 chr4 60142255 60142551 -124146111 + AluJb SINE Alu 1 297 -15 283 381 54 6 chr4 60142601 60142769 -124145893 - MIR SINE MIR -41 221 46 180 338 0 70 chr4 60143127 60143198 -124145464 + L2 LINE L2 2995 3060 -253 1165 149 68 159 chr4 60143238 60143621 -124145041 + MER7A DNA MER2_type 1 346 0 183 244 183 37 chr4 60145561 60145643 -124143019 + L2 LINE L2 3210 3303 -10 565 279 106 29 chr4 60145855 60146063 -124142599 + MIR SINE MIR 8 231 -31 737 145 6 19 chr4 60146169 60146328 -124142334 + GA-rich Low_complexity Low_complexity 2 158 0 30 0 0 0 chr4 60146535 60146565 -124142097 + AT_rich Low_complexity Low_complexity 1 30 0 2125 103 0 3 chr4 60146565 60146855 -124141807 - AluSc SINE Alu -20 289 1 355 319 12 0 chr4 60147862 60148028 -124140634 - L1MEc LINE L1 -4052 2344 2177 301 292 86 35 chr4 60148106 60148363 -124140299 + L1M4 LINE L1 4315 4584 -1562 329 258 153 85 chr4 60149435 60149861 -124138801 + LTR16A LTR ERVL 1 448 -2 29 0 0 0 chr4 60150929 60150958 -124137704 + AT_rich Low_complexity Low_complexity 1 29 0 398 252 47 31 chr4 60150989 60151116 -124137546 - L3 LINE CR1 -1135 442 314 27 29 0 0 chr4 60151346 60151380 -124137282 + AT_rich Low_complexity Low_complexity 1 34 0 198 225 155 14 chr4 60151485 60151556 -124137106 + MIR SINE MIR 153 233 -29 206 214 18 18 chr4 60152076 60152132 -124136530 + (TA)n Simple_repeat Simple_repeat 1 56 0 239 290 75 9 chr4 60152912 60153019 -124135643 - L2 LINE L2 -54 3259 3146 32 57 0 0 chr4 60153097 60153150 -124135512 + AT_rich Low_complexity Low_complexity 1 53 0 1694 172 41 0 chr4 60153233 60153524 -124135138 - AluSx SINE Alu -9 303 1 360 287 0 0 chr4 60153766 60153860 -124134802 - L1MC4 LINE L1 -1334 6708 6615 313 311 0 0 chr4 60153793 60153883 -124134779 + L1MC4 LINE L1 6614 6703 -1339 * 183 114 0 0 chr4 60153885 60153920 -124134742 + (TA)n Simple_repeat Simple_repeat 2 36 0 213 302 111 32 chr4 60155054 60155180 -124133482 + MIR SINE MIR 18 153 -55 474 18 0 0 chr4 60155245 60155300 -124133362 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 32 95 0 0 chr4 60155616 60155711 -124132951 + AT_rich Low_complexity Low_complexity 1 95 0 30 27 0 0 chr4 60155755 60155792 -124132870 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr4 60155802 60155823 -124132839 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 60156115 60156140 -124132522 + AT_rich Low_complexity Low_complexity 1 25 0 28 0 0 0 chr4 60156208 60156236 -124132426 + AT_rich Low_complexity Low_complexity 1 28 0 365 242 8 48 chr4 60156652 60156776 -124131886 - L2 LINE L2 -81 3232 3114 2559 146 56 54 chr4 60156820 60157733 -124130929 - L1MA4 LINE L1 -511 5789 4885 2798 141 30 16 chr4 60157736 60157970 -124130692 + L1MA4 LINE L1 5786 6015 -285 2206 101 21 58 chr4 60157970 60158182 -124130480 - THE1B LTR MaLR 0 364 146 2113 100 0 4 chr4 60158182 60158463 -124130199 + AluSx SINE Alu 1 280 -32 207 0 0 0 chr4 60158466 60158489 -124130173 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2206 101 21 58 chr4 60158489 60158650 -124130012 - THE1B LTR MaLR -220 144 1 2798 141 30 16 chr4 60158650 60158919 -124129743 + L1MA4 LINE L1 6015 6296 -4 304 172 17 121 chr4 60160537 60160612 -124128050 - MER53 DNA DNA -85 104 44 1888 147 134 11 chr4 60160612 60160993 -124127669 - MSTA LTR MaLR 0 428 1 304 172 17 121 chr4 60160993 60161033 -124127629 - MER53 DNA DNA -145 44 1 496 227 107 14 chr4 60161387 60161545 -124127117 - MER58A DNA MER1_type 0 156 1 228 35 0 0 chr4 60163145 60163174 -124125488 + (TA)n Simple_repeat Simple_repeat 2 30 0 1633 157 11 7 chr4 60163235 60163556 -124125106 + AluSx SINE Alu 1 322 0 511 217 43 0 chr4 60163992 60164107 -124124555 + L2 LINE L2 3193 3312 -1 204 158 0 0 chr4 60164885 60164923 -124123739 + GA-rich Low_complexity Low_complexity 1 38 0 642 323 8 32 chr4 60166542 60166793 -124121869 + MIR SINE MIR 2 246 -16 27 73 0 0 chr4 60167285 60167340 -124121322 + AT_rich Low_complexity Low_complexity 1 55 0 1208 270 79 20 chr4 60168206 60168802 -124119860 - Charlie2 DNA MER1_type 0 2862 2232 240 190 38 38 chr4 60169302 60169381 -124119281 + (CAATA)n Simple_repeat Simple_repeat 2 80 0 981 264 261 15 chr4 60169641 60170039 -124118623 - MLT1F1 LTR MaLR -7 560 65 305 397 15 23 chr4 60170147 60170293 -124118369 + MIR3 SINE MIR 26 172 -36 257 306 27 61 chr4 60170377 60170524 -124118138 - L2 LINE L2 -1340 1974 1833 342 45 0 0 chr4 60170594 60170638 -124118024 + (TG)n Simple_repeat Simple_repeat 1 44 0 434 345 43 20 chr4 60170828 60171083 -124117579 + MIR SINE MIR 2 262 0 279 389 50 7 chr4 60171210 60171349 -124117313 - L2 LINE L2 -12 3260 3116 1518 131 15 113 chr4 60173619 60173818 -124114844 - AluSx SINE Alu 0 302 148 2242 105 3 13 chr4 60173818 60174132 -124114530 + AluSp SINE Alu 1 311 -2 1518 131 15 113 chr4 60174132 60174267 -124114395 - AluSx SINE Alu -154 148 1 210 164 0 0 chr4 60174315 60174370 -124114292 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 231 114 0 0 chr4 60174761 60174796 -124113866 + (CA)n Simple_repeat Simple_repeat 2 36 0 23 0 0 0 chr4 60175396 60175419 -124113243 + AT_rich Low_complexity Low_complexity 1 23 0 2351 177 20 38 chr4 60177259 60177814 -124110848 - L1MA9 LINE L1 -2 6310 5766 760 131 58 89 chr4 60177820 60177901 -124110761 + L1M3 LINE L1 5254 5336 -832 1954 109 11 0 chr4 60177901 60178216 -124110446 + AluSx SINE Alu 6 323 0 760 131 58 89 chr4 60178216 60178324 -124110338 + L1M3 LINE L1 5336 5438 -730 2181 104 10 0 chr4 60180848 60181147 -124107515 + AluSp SINE Alu 1 302 -11 29 28 0 0 chr4 60181239 60181275 -124107387 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr4 60181368 60181394 -124107268 + AT_rich Low_complexity Low_complexity 1 26 0 232 47 23 23 chr4 60183308 60183351 -124105311 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2272 68 0 4 chr4 60183356 60183636 -124105026 - AluY SINE Alu -32 279 1 876 247 21 99 chr4 60184572 60184855 -124103807 + MIR SINE MIR 2 262 0 28 29 0 0 chr4 60185060 60185095 -124103567 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 60185725 60185746 -124102916 + AT_rich Low_complexity Low_complexity 1 21 0 416 319 99 11 chr4 60186461 60186643 -124102019 - MIR SINE MIR -12 250 53 209 373 80 13 chr4 60187411 60187636 -124101026 + L2 LINE L2 2843 3082 -190 237 298 24 0 chr4 60187707 60187791 -124100871 + CT-rich Low_complexity Low_complexity 3 88 0 679 215 0 0 chr4 60188974 60189109 -124099553 - FLAM_C SINE Alu -5 138 4 246 32 0 0 chr4 60189409 60189440 -124099222 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 233 339 57 16 chr4 60191298 60191422 -124097240 + MIR SINE MIR 116 244 -18 210 277 0 0 chr4 60191665 60191712 -124096950 + (TATATG)n Simple_repeat Simple_repeat 4 50 0 455 279 14 96 chr4 60192393 60192612 -124096050 - MIR SINE MIR -57 205 5 547 132 44 15 chr4 60192812 60192948 -124095714 + GA-rich Low_complexity Low_complexity 3 142 0 310 318 32 16 chr4 60193155 60193281 -124095381 + L2 LINE L2 3184 3311 -2 2008 75 79 0 chr4 60193774 60194052 -124094610 + AluSp SINE Alu 1 300 -13 2362 57 3 0 chr4 60194052 60194348 -124094314 + AluY SINE Alu 1 297 -14 2292 79 0 28 chr4 60194897 60195215 -124093447 - AluY SINE Alu -2 309 1 2168 108 3 3 chr4 60195660 60195957 -124092705 + AluY SINE Alu 1 297 -14 23 54 0 0 chr4 60196126 60196163 -124092499 + AT_rich Low_complexity Low_complexity 1 37 0 275 311 19 0 chr4 60196895 60196998 -124091664 + MIR SINE MIR 147 251 -11 396 40 0 0 chr4 60197366 60197416 -124091246 + (CA)n Simple_repeat Simple_repeat 1 50 0 315 0 0 0 chr4 60197421 60197456 -124091206 + (GA)n Simple_repeat Simple_repeat 2 36 0 513 259 30 76 chr4 60198128 60198325 -124090337 - MIR SINE MIR -55 207 20 247 288 0 15 chr4 60198452 60198533 -124090129 + MIR SINE MIR 15 94 -114 242 280 47 47 chr4 60198549 60198656 -124090006 - L2 LINE L2 -10 3303 3197 33 73 0 0 chr4 60201066 60201134 -124087528 + AT_rich Low_complexity Low_complexity 1 68 0 742 189 0 19 chr4 60201134 60201293 -124087369 - L1MA4 LINE L1 -5 6295 6140 1644 196 0 7 chr4 60201395 60201686 -124086976 - AluJo SINE Alu -23 289 1 27 0 0 0 chr4 60201733 60201760 -124086902 + AT_rich Low_complexity Low_complexity 1 27 0 4420 166 93 11 chr4 60201773 60202784 -124085878 - L1MA5 LINE L1 -23 6277 5181 335 295 145 24 chr4 60203469 60203635 -124085027 + MIR SINE MIR 46 231 -31 510 89 13 25 chr4 60204948 60205027 -124083635 + THE1B LTR MaLR 1 78 -286 4990 183 22 27 chr4 60205982 60206159 -124082503 - L1PA16 LINE L1 -9 6157 5981 2188 130 14 8 chr4 60206159 60206512 -124082150 - THE1A LTR MaLR 0 355 1 2400 86 0 0 chr4 60206516 60206818 -124081844 - AluSq SINE Alu -10 303 2 4990 183 22 27 chr4 60206818 60208477 -124080185 - L1PA16 LINE L1 -188 5978 4326 1591 142 7 50 chr4 60208477 60208779 -124079883 + AluSx SINE Alu 11 299 -13 4990 183 22 27 chr4 60208779 60208936 -124079726 - L1PA16 LINE L1 -1840 4326 4170 254 256 41 50 chr4 60209623 60209744 -124078918 - MIR SINE MIR -43 219 100 28 29 0 0 chr4 60209926 60209961 -124078701 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr4 60210650 60210673 -124077989 + AT_rich Low_complexity Low_complexity 1 23 0 219 331 81 40 chr4 60211431 60211579 -124077083 + L3 LINE CR1 1210 1363 -214 22 35 0 0 chr4 60211835 60211864 -124076798 + AT_rich Low_complexity Low_complexity 1 29 0 543 335 111 31 chr4 60212483 60212992 -124075670 + L2 LINE L2 2772 3312 -1 31 0 0 0 chr4 60214370 60214401 -124074261 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr4 60215557 60215585 -124073077 + AT_rich Low_complexity Low_complexity 1 28 0 309 82 0 0 chr4 60218040 60218089 -124070573 + (TG)n Simple_repeat Simple_repeat 2 50 0 279 340 7 64 chr4 60218555 60218696 -124069966 - L2 LINE L2 -212 3060 2928 236 306 37 30 chr4 60219031 60219165 -124069497 - L2 LINE L2 -797 2517 2383 243 125 0 0 chr4 60220441 60220481 -124068181 + (TG)n Simple_repeat Simple_repeat 1 40 0 320 337 171 0 chr4 60221919 60222124 -124066538 + MIR SINE MIR 3 242 -20 188 352 39 82 chr4 60222592 60222825 -124065837 - L2 LINE L2 -225 3047 2825 183 335 154 41 chr4 60222947 60223266 -124065396 - L2 LINE L2 -633 2681 2327 1401 218 52 0 chr4 60223883 60224180 -124064482 + AluJo SINE Alu 1 311 0 21 57 0 0 chr4 60225051 60225086 -124063576 + AT_rich Low_complexity Low_complexity 1 35 0 640 264 130 13 chr4 60225416 60225647 -124063015 + MIR SINE MIR 2 259 -3 247 361 128 8 chr4 60225760 60225893 -124062769 + L2 LINE L2 3124 3272 0 557 252 15 0 chr4 60226773 60226904 -124061758 - MER94 DNA DNA 0 134 2 233 312 115 25 chr4 60228261 60228418 -124060244 + L2 LINE L2 3128 3298 -15 225 0 0 0 chr4 60229919 60229944 -124058718 + (CG)n Simple_repeat Simple_repeat 1 25 0 180 0 0 0 chr4 60229943 60229963 -124058699 + (TG)n Simple_repeat Simple_repeat 2 21 0 * 424 115 26 0 chr4 60231275 60231353 -124057309 - L1PA16 LINE L1 0 6166 6087 8376 231 48 42 chr4 60231358 60235519 -124053143 - L1PBb LINE L1 -1016 5832 1698 224 0 65 0 chr4 60235519 60235550 -124053112 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 8376 231 48 42 chr4 60235550 60235826 -124052836 - L1PBb LINE L1 -5150 1698 1425 2258 96 0 7 chr4 60235826 60236129 -124052533 - AluSp SINE Alu -12 301 1 8376 231 48 42 chr4 60236129 60236407 -124052255 - L1PBb LINE L1 -5423 1425 1003 341 362 68 56 chr4 60236923 60237423 -124051239 - L1PBb LINE L1 -6333 516 11 448 266 234 5 chr4 60237434 60237618 -124051044 - MIR SINE MIR -34 228 3 2068 140 3 0 chr4 60237655 60237963 -124050699 + AluSx SINE Alu 2 310 -2 216 0 0 0 chr4 60238734 60238758 -124049904 + (T)n Simple_repeat Simple_repeat 1 24 0 306 0 0 0 chr4 60239231 60239265 -124049397 + (CA)n Simple_repeat Simple_repeat 2 35 0 282 246 291 9 chr4 60239532 60239642 -124049020 - MIR3 SINE MIR -11 197 57 380 299 45 53 chr4 60240168 60240432 -124048230 + L2 LINE L2 1801 2062 -1252 1612 206 118 25 chr4 60240548 60240990 -124047672 + MLT1D LTR MaLR 23 505 0 483 301 102 37 chr4 60241346 60241832 -124046830 - L1M2 LINE L1 -424 5754 5279 285 326 35 0 chr4 60242513 60242599 -124046063 - MER115 DNA AcHobo -7 686 598 1985 105 0 4 chr4 60242926 60243203 -124045459 - AluSx SINE Alu -36 276 1 278 26 26 0 chr4 60243265 60243304 -124045358 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 603 361 25 11 chr4 60243403 60243677 -124044985 + L2 LINE L2 2567 2844 -470 3970 223 32 4 chr4 60243704 60244604 -124044058 - MER63C DNA MER1_type -5 925 1 5752 184 21 44 chr4 60244641 60246814 -124041848 - L1PA15 LINE L1 0 6165 4041 253 326 34 0 chr4 60247089 60247178 -124041484 + L2 LINE L2 3222 3313 0 21 0 0 0 chr4 60247299 60247320 -124041342 + AT_rich Low_complexity Low_complexity 1 21 0 229 192 58 19 chr4 60249572 60249624 -124039038 - L2 LINE L2 -4 3309 3256 22 0 0 0 chr4 60249829 60249851 -124038811 + AT_rich Low_complexity Low_complexity 1 22 0 1604 197 3 20 chr4 60249853 60250148 -124038514 - AluJb SINE Alu -18 294 5 22 35 0 0 chr4 60251483 60251512 -124037150 + AT_rich Low_complexity Low_complexity 1 29 0 306 0 0 0 chr4 60251553 60251587 -124037075 + (TTTTA)n Simple_repeat Simple_repeat 4 37 0 2172 103 0 7 chr4 60251589 60251879 -124036783 - AluSx SINE Alu -24 288 1 22 35 0 0 chr4 60251883 60251912 -124036750 + AT_rich Low_complexity Low_complexity 1 29 0 886 281 65 58 chr4 60252106 60252644 -124036018 - MER34 LTR ERV1 0 542 1 730 267 145 44 chr4 60252845 60252974 -124035688 - L2 LINE L2 -9 3304 3189 3863 79 45 0 chr4 60252974 60253504 -124035158 - MER41A LTR ERV1 0 554 1 730 267 145 44 chr4 60253504 60253977 -124034685 - L2 LINE L2 -124 3189 2650 185 56 0 56 chr4 60255185 60255221 -124033441 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 385 138 0 23 chr4 60255492 60255579 -124033083 + (TA)n Simple_repeat Simple_repeat 2 86 0 396 186 26 0 chr4 60255959 60256072 -124032590 + (TCTA)n Simple_repeat Simple_repeat 2 117 0 237 273 125 11 chr4 60256285 60256373 -124032289 + MIR SINE MIR 91 188 -74 22 0 0 0 chr4 60258026 60258048 -124030614 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr4 60259180 60259201 -124029461 + (TTA)n Simple_repeat Simple_repeat 2 22 0 574 250 0 0 chr4 60259206 60259322 -124029340 - FLAM_A SINE Alu -17 116 1 4936 153 32 9 chr4 60259387 60260235 -124028427 - Tigger1 DNA MER2_type 0 2418 1552 743 131 0 0 chr4 60260241 60260348 -124028314 + FRAM SINE Alu 60 166 -10 8892 122 18 67 chr4 60260371 60261111 -124027551 - Tigger1 DNA MER2_type -862 1556 781 2043 93 7 4 chr4 60261111 60261412 -124027250 + AluSc SINE Alu 1 302 0 8892 122 18 67 chr4 60261412 60261663 -124026999 - Tigger1 DNA MER2_type -1637 781 519 1513 215 10 3 chr4 60261663 60261956 -124026706 - AluJo SINE Alu -17 295 1 8892 122 18 67 chr4 60261956 60262596 -124026066 - Tigger1 DNA MER2_type -1899 519 3 2277 110 0 0 chr4 60262920 60263219 -124025443 - AluSq SINE Alu -12 301 3 1573 216 13 25 chr4 60263458 60263851 -124024811 - MLT1B LTR MaLR -2 388 1 22 0 0 0 chr4 60264034 60264056 -124024606 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr4 60264106 60264148 -124024514 + AT_rich Low_complexity Low_complexity 1 42 0 403 297 76 8 chr4 60264489 60264607 -124024055 - MIR3 SINE MIR -17 191 66 1873 174 25 19 chr4 60264691 60265054 -124023608 + MLT1A1 LTR MaLR 1 365 0 197 350 52 21 chr4 60265917 60266014 -124022648 - MIR SINE MIR -140 122 23 285 257 137 34 chr4 60266280 60266455 -124022207 - MER112 DNA MER1_type 0 260 68 23 0 0 0 chr4 60266610 60266633 -124022029 + AT_rich Low_complexity Low_complexity 1 23 0 1814 176 9 137 chr4 60266643 60266836 -124021826 - L1MB8 LINE L1 -12 6166 5950 622 217 9 0 chr4 60266836 60266951 -124021711 + FLAM_A SINE Alu 1 116 -17 1814 176 9 137 chr4 60266951 60267171 -124021491 - L1MB8 LINE L1 -228 5950 5847 477 219 8 8 chr4 60267171 60267294 -124021368 - L1MB5 LINE L1 -9 6165 6043 1814 176 9 137 chr4 60267294 60267463 -124021199 - L1MB8 LINE L1 -331 5847 5658 372 283 96 30 chr4 60267955 60268153 -124020509 + L2 LINE L2 3094 3304 -9 1661 170 49 3 chr4 60268576 60268700 -124019962 + AluJo SINE Alu 1 118 -194 432 0 0 0 chr4 60268700 60268748 -124019914 + (TAAAA)n Simple_repeat Simple_repeat 4 51 0 1661 170 49 3 chr4 60268748 60268911 -124019751 + AluJo SINE Alu 118 301 -11 226 209 275 11 chr4 60269109 60269200 -124019462 - MIR SINE MIR -10 252 138 198 256 23 0 chr4 60269319 60269362 -124019300 + L2 LINE L2 3267 3310 -3 21 0 0 0 chr4 60269960 60269981 -124018681 + AT_rich Low_complexity Low_complexity 1 21 0 187 324 73 0 chr4 60270468 60270536 -124018126 - L2 LINE L2 -3 3310 3238 189 0 0 0 chr4 60274470 60274491 -124014171 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 321 131 0 0 chr4 60274534 60274595 -124014067 + (TG)n Simple_repeat Simple_repeat 2 62 0 1749 167 3 16 chr4 60274912 60275217 -124013445 + AluJo SINE Alu 1 301 -11 1492 223 120 17 chr4 60277901 60278384 -124010278 - MLT1F1 LTR MaLR -20 606 2 3589 117 32 10 chr4 60278387 60278976 -124009686 - LTR43 LTR ERV1 0 602 1 253 280 189 15 chr4 60278978 60279110 -124009552 + L2 LINE L2 2144 2298 -1016 230 365 107 25 chr4 60279139 60279336 -124009326 + L2 LINE L2 2430 2642 -672 2819 105 12 10 chr4 60279559 60279977 -124008685 - L1PA10 LINE L1 0 6168 5750 284 333 76 0 chr4 60280329 60280434 -124008228 + L2 LINE L2 2247 2359 -955 201 129 0 0 chr4 60282273 60282304 -124006358 - L3b LINE CR1 -9 1574 1544 229 295 87 20 chr4 60283340 60283489 -124005173 + L1MC4a LINE L1 5330 5488 -2320 409 280 85 119 chr4 60283546 60283757 -124004905 + L1MC4a LINE L1 5572 5789 -2019 21 0 0 0 chr4 60283757 60283778 -124004884 + AT_rich Low_complexity Low_complexity 1 21 0 409 280 85 119 chr4 60283778 60284042 -124004620 + L1MC4a LINE L1 5789 6050 -1758 23 54 0 0 chr4 60285833 60285870 -124002792 + AT_rich Low_complexity Low_complexity 1 37 0 960 235 47 11 chr4 60288320 60288597 -124000065 - L1ME3A LINE L1 -6 6164 5878 437 279 50 22 chr4 60288610 60288832 -123999830 - L1MB8 LINE L1 -1 6177 5950 1496 182 29 19 chr4 60289179 60289487 -123999175 + AluJb SINE Alu 1 311 -1 17642 157 65 24 chr4 60290339 60293635 -123995027 - L1M1 LINE L1 -4117 3448 17 1191 213 0 20 chr4 60294004 60294248 -123994414 + AluJo SINE Alu 50 288 -24 2964 128 18 35 chr4 60296292 60296682 -123991980 - MER39B LTR ERV1 -2 651 271 1868 139 24 0 chr4 60296682 60296969 -123991693 - AluSx SINE Alu -18 294 1 2964 128 18 35 chr4 60296969 60297088 -123991574 - MER39B LTR ERV1 -382 271 151 2106 125 0 3 chr4 60297231 60297536 -123991126 + AluSc SINE Alu 1 304 -5 24 53 0 0 chr4 60299219 60299257 -123989405 + AT_rich Low_complexity Low_complexity 1 38 0 398 318 87 47 chr4 60299426 60299562 -123989100 - MLT1K LTR MaLR -275 313 184 889 218 47 9 chr4 60299562 60299773 -123988889 + MER20 DNA MER1_type 1 219 0 398 318 87 47 chr4 60299773 60299935 -123988727 - MLT1K LTR MaLR -404 184 3 231 61 0 0 chr4 60300924 60300957 -123987705 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 23 33 0 0 chr4 60301555 60301585 -123987077 + AT_rich Low_complexity Low_complexity 1 30 0 2200 126 3 0 chr4 60302012 60302322 -123986340 + AluSx SINE Alu 1 311 -1 255 355 82 59 chr4 60303101 60303321 -123985341 - L2 LINE L2 -41 3231 3007 1484 184 85 48 chr4 60303542 60303918 -123984744 - MLT1B LTR MaLR 0 390 1 2004 194 62 138 chr4 60304141 60304519 -123984143 - LTR8A LTR ERV1 0 727 322 2026 97 0 11 chr4 60304519 60304788 -123983874 + AluSg SINE Alu 1 266 -44 216 0 0 0 chr4 60304796 60304820 -123983842 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2004 194 62 138 chr4 60304820 60305219 -123983443 - LTR8A LTR ERV1 -412 315 1 22 0 0 0 chr4 60307118 60307140 -123981522 + AT_rich Low_complexity Low_complexity 1 22 0 10038 60 99 5 chr4 60307740 60309140 -123979522 - L1P LINE L1 -4614 1532 2 189 0 0 0 chr4 60310186 60310207 -123978455 + (T)n Simple_repeat Simple_repeat 1 21 0 392 259 92 23 chr4 60310555 60310686 -123977976 - MIR SINE MIR -6 256 117 21 71 0 0 chr4 60312048 60312090 -123976572 + AT_rich Low_complexity Low_complexity 1 42 0 1999 111 6 35 chr4 60313436 60313751 -123974911 - AluSc SINE Alu -3 306 1 420 269 34 8 chr4 60314302 60314421 -123974241 + MER58B DNA MER1_type 220 341 0 193 380 42 0 chr4 60314647 60314718 -123973944 - L2 LINE L2 -9 3263 3190 1112 214 46 82 chr4 60314767 60314967 -123973695 + MLT1A2 LTR MaLR 1 207 -167 336 24 0 0 chr4 60314967 60315008 -123973654 + (TC)n Simple_repeat Simple_repeat 1 41 0 * 342 0 0 0 chr4 60315007 60315045 -123973617 + (CA)n Simple_repeat Simple_repeat 1 38 0 1112 214 46 82 chr4 60315008 60315232 -123973430 + MLT1A2 LTR MaLR 207 374 0 756 278 130 57 chr4 60315282 60315689 -123972973 - MLT1K LTR MaLR -3 585 149 27 62 0 0 chr4 60316105 60316153 -123972509 + AT_rich Low_complexity Low_complexity 1 48 0 33 56 0 0 chr4 60316374 60316428 -123972234 + AT_rich Low_complexity Low_complexity 1 54 0 2187 126 0 0 chr4 60316453 60316763 -123971899 + AluSg SINE Alu 1 310 0 335 269 112 46 chr4 60316929 60317126 -123971536 - MIR SINE MIR -16 246 37 21 71 0 0 chr4 60317229 60317271 -123971391 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr4 60317321 60317351 -123971311 + AT_rich Low_complexity Low_complexity 1 30 0 198 150 0 0 chr4 60319198 60319238 -123969424 + (TA)n Simple_repeat Simple_repeat 2 41 0 297 356 112 16 chr4 60320227 60320415 -123968247 + MIR SINE MIR 57 262 0 1987 209 44 18 chr4 60320700 60321155 -123967507 - MLT1C LTR MaLR 0 467 1 236 301 168 0 chr4 60321229 60321342 -123967320 + L2 LINE L2 3180 3311 -2 21 36 0 0 chr4 60323474 60323502 -123965160 + AT_rich Low_complexity Low_complexity 1 28 0 7987 169 81 45 chr4 60323855 60325550 -123963112 + MER52A LTR ERV1 1 1755 0 21 36 0 0 chr4 60326365 60326393 -123962269 + AT_rich Low_complexity Low_complexity 1 28 0 466 284 129 70 chr4 60326674 60326973 -123961689 + MLT1L LTR MaLR 1 281 -334 1870 138 13 10 chr4 60326973 60327284 -123961378 + AluSq SINE Alu 2 313 0 466 284 129 70 chr4 60327284 60327557 -123961105 + MLT1L LTR MaLR 281 607 -8 1576 235 60 37 chr4 60329820 60330306 -123958356 + MLT1D LTR MaLR 1 497 -8 1655 193 3 3 chr4 60330580 60330870 -123957792 + AluJo SINE Alu 1 290 -22 25 0 0 28 chr4 60331844 60331857 -123956805 + AT_rich Low_complexity Low_complexity 1 13 -22 2062 120 3 0 chr4 60331857 60332140 -123956522 + AluSc SINE Alu 1 284 -25 25 0 0 28 chr4 60332140 60332162 -123956500 + AT_rich Low_complexity Low_complexity 13 35 0 306 233 30 3 chr4 60332395 60332500 -123956162 - MER61D LTR ERV1 -87 702 341 2228 181 18 9 chr4 60333765 60334212 -123954450 - L1MA9 LINE L1 -911 5235 4785 4948 165 48 28 chr4 60334217 60335195 -123953467 + L1MA9 LINE L1 5254 6251 -61 24 32 0 0 chr4 60335568 60335599 -123953063 + AT_rich Low_complexity Low_complexity 1 31 0 441 0 0 0 chr4 60335938 60335987 -123952675 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 21 0 0 0 chr4 60336162 60336183 -123952479 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chr4 60337435 60337466 -123951196 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2378 118 68 19 chr4 60337466 60337891 -123950771 - L1MA3 LINE L1 -10 6295 5850 24 32 0 0 chr4 60337927 60337958 -123950704 + AT_rich Low_complexity Low_complexity 1 31 0 33 66 0 0 chr4 60338059 60338120 -123950542 + AT_rich Low_complexity Low_complexity 1 61 0 30 59 0 0 chr4 60340478 60340529 -123948133 + AT_rich Low_complexity Low_complexity 1 51 0 2035 163 113 0 chr4 60340794 60341175 -123947487 - MSTB LTR MaLR -2 424 1 325 275 120 64 chr4 60341365 60341598 -123947064 - MIR SINE MIR -14 248 3 396 0 0 0 chr4 60342197 60342241 -123946421 + (TG)n Simple_repeat Simple_repeat 2 45 0 21 36 0 0 chr4 60343506 60343534 -123945128 + AT_rich Low_complexity Low_complexity 1 28 0 194 299 30 30 chr4 60343699 60343766 -123944896 + L2 LINE L2 3246 3312 -1 23 33 0 0 chr4 60343882 60343912 -123944750 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr4 60344056 60344086 -123944576 + AT_rich Low_complexity Low_complexity 1 30 0 781 137 0 50 chr4 60344357 60344496 -123944166 - FLAM_C SINE Alu 0 133 2 277 316 97 18 chr4 60344627 60344741 -123943921 - L2 LINE L2 -5 3267 3145 1286 174 4 29 chr4 60344906 60345148 -123943514 - AluJb SINE Alu -14 298 63 2554 175 28 4 chr4 60345148 60345617 -123943045 - LTR27 LTR ERV1 -149 487 8 599 154 29 0 chr4 60345617 60345721 -123942941 - FLAM_C SINE Alu -36 107 1 186 216 0 0 chr4 60346690 60346727 -123941935 - L2 LINE L2 -5 3267 3231 2310 98 0 16 chr4 60346758 60347075 -123941587 - AluSx SINE Alu 0 312 1 209 389 46 0 chr4 60347085 60347193 -123941469 + L2 LINE L2 3160 3272 0 1939 139 20 0 chr4 60347380 60347675 -123940987 + AluSq SINE Alu 4 304 -9 2268 71 7 3 chr4 60348268 60348585 -123940077 + AluY SINE Alu 1 318 0 31 58 0 0 chr4 60349409 60349461 -123939201 + AT_rich Low_complexity Low_complexity 1 52 0 307 298 36 0 chr4 60349466 60349550 -123939112 - L2 LINE L2 -2 3311 3225 23 0 0 0 chr4 60349892 60349915 -123938747 + AT_rich Low_complexity Low_complexity 1 23 0 231 61 0 0 chr4 60350046 60350079 -123938583 + (CA)n Simple_repeat Simple_repeat 2 34 0 2082 120 7 13 chr4 60351529 60351829 -123936833 - AluSx SINE Alu -8 304 7 214 314 47 120 chr4 60352568 60352950 -123935712 - L3 LINE CR1 -774 803 450 626 285 55 0 chr4 60353238 60353403 -123935259 + MIR SINE MIR 89 262 0 2440 150 18 2 chr4 60354358 60354751 -123933911 - Tigger1 DNA MER2_type 0 2418 2020 227 222 56 0 chr4 60355241 60355295 -123933367 + L2 LINE L2 2211 2267 -1047 196 254 55 0 chr4 60355495 60355550 -123933112 + L2 LINE L2 2908 2965 -307 188 273 0 0 chr4 60355725 60355758 -123932904 + L2 LINE L2 3143 3175 -97 32 26 0 0 chr4 60356208 60356247 -123932415 + AT_rich Low_complexity Low_complexity 1 39 0 352 368 57 10 chr4 60356383 60356592 -123932070 - L2 LINE L2 -566 2748 2530 327 359 15 0 chr4 60357998 60358129 -123930533 - L2 LINE L2 0 3313 3181 1086 333 96 19 chr4 60358144 60358789 -123929873 - L2 LINE L2 -720 2594 1900 195 351 0 32 chr4 60358955 60359049 -123929613 - L2 LINE L2 -8 3264 3174 2088 109 3 0 chr4 60359239 60359631 -123929031 + AluSp SINE Alu 1 393 0 362 286 56 8 chr4 60360227 60360353 -123928309 - MIR SINE MIR -59 203 72 882 39 8 16 chr4 60363246 60363375 -123925287 + (TAGA)n Simple_repeat Simple_repeat 3 130 0 631 277 112 0 chr4 60363425 60363631 -123925031 - MIR SINE MIR -29 233 5 1061 268 118 6 chr4 60363762 60364083 -123924579 + LTR18A LTR ERVL 1 357 0 8229 164 14 2 chr4 60364090 60365701 -123922961 + HERVL18 LTR ERVL 2 1701 -4346 2261 139 0 3 chr4 60365730 60366062 -123922600 + HERVL18 LTR ERVL 3258 3588 -2459 * 11411 156 19 6 chr4 60366042 60367849 -123920813 + HERVL18 LTR ERVL 4218 6047 0 976 271 113 24 chr4 60367850 60368178 -123920484 + LTR18A LTR ERVL 1 357 0 187 308 81 47 chr4 60368733 60368905 -123919757 + L2 LINE L2 2830 3007 -265 208 262 24 0 chr4 60369315 60369399 -123919263 + (TA)n Simple_repeat Simple_repeat 2 87 0 22 56 0 0 chr4 60370128 60370164 -123918498 + AT_rich Low_complexity Low_complexity 1 36 0 32 57 0 0 chr4 60370501 60370554 -123918108 + AT_rich Low_complexity Low_complexity 1 53 0 317 235 100 94 chr4 60370752 60370830 -123917832 - MIR SINE MIR -46 216 140 2354 54 0 72 chr4 60370830 60371163 -123917499 - AluY SINE Alu -2 309 1 317 235 100 94 chr4 60371163 60371254 -123917408 - MIR SINE MIR -122 140 46 2531 46 0 0 chr4 60371487 60371790 -123916872 + AluY SINE Alu 2 304 -7 1957 125 3 30 chr4 60372090 60372395 -123916267 + AluSx SINE Alu 1 297 -15 2781 158 79 19 chr4 60372503 60373074 -123915588 + MER6A DNA MER2_type 1 605 0 363 330 73 55 chr4 60373827 60374157 -123914505 + MLT1J LTR MaLR 1 336 -175 248 164 0 36 chr4 60374622 60374677 -123913985 - MER5C DNA MER1_type 0 324 272 1762 150 30 10 chr4 60374678 60374978 -123913684 - AluJb SINE Alu -4 308 3 3009 120 94 20 chr4 60375001 60375492 -123913170 + MER1A DNA MER1_type 1 527 0 283 278 28 0 chr4 60375593 60375665 -123912997 - MER5C DNA MER1_type -200 124 51 2435 229 99 66 chr4 60378279 60378405 -123910257 + L1MDa LINE L1 91 211 -6329 272 27 27 0 chr4 60378405 60378442 -123910220 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 2435 229 99 66 chr4 60378442 60379622 -123909040 + L1MDa LINE L1 211 1524 -5016 1237 203 51 24 chr4 60379804 60380099 -123908563 + AluJo SINE Alu 1 303 -9 1259 209 126 3 chr4 60380758 60381060 -123907602 + L1MC4 LINE L1 7403 7741 -301 779 311 89 23 chr4 60381060 60381601 -123907061 + MER45C DNA AcHobo 1 621 -332 254 250 0 0 chr4 60381604 60381656 -123907006 + MER45C DNA AcHobo 902 953 0 545 257 55 52 chr4 60381660 60381932 -123906730 + L1MC4 LINE L1 7738 8010 -32 21 0 0 0 chr4 60382024 60382045 -123906617 + AT_rich Low_complexity Low_complexity 1 21 0 450 86 94 0 chr4 60382762 60383011 -123905651 + (TA)n Simple_repeat Simple_repeat 1 272 0 24 53 0 0 chr4 60383521 60383559 -123905103 + AT_rich Low_complexity Low_complexity 1 38 0 218 263 0 0 chr4 60384317 60384374 -123904288 + (TTCA)n Simple_repeat Simple_repeat 1 57 0 27 62 0 0 chr4 60385556 60385604 -123903058 + AT_rich Low_complexity Low_complexity 1 48 0 428 305 137 11 chr4 60385941 60386131 -123902531 + MIR SINE MIR 46 259 -3 24 0 0 0 chr4 60387921 60387945 -123900717 + AT_rich Low_complexity Low_complexity 1 24 0 295 319 110 0 chr4 60388028 60388119 -123900543 + L2 LINE L2 3134 3234 -38 499 248 26 8 chr4 60388129 60388246 -123900416 + MLT1B LTR MaLR 4 122 -252 2513 273 73 15 chr4 60388262 60389042 -123899620 - MER21B LTR ERV1 -27 836 12 766 222 51 69 chr4 60389049 60389324 -123899338 + MLT1B LTR MaLR 121 390 0 231 88 0 0 chr4 60389348 60389382 -123899280 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 26 30 0 0 chr4 60389850 60389883 -123898779 + AT_rich Low_complexity Low_complexity 1 33 0 1372 235 43 9 chr4 60389970 60390298 -123898364 + MER58B DNA MER1_type 2 340 -1 218 276 17 0 chr4 60392463 60392521 -123896141 - MIR3 SINE MIR -46 162 104 224 77 26 0 chr4 60393464 60393503 -123895159 + (GA)n Simple_repeat Simple_repeat 1 40 0 22 88 0 0 chr4 60395125 60395182 -123893480 + AT_rich Low_complexity Low_complexity 1 57 0 225 0 0 0 chr4 60395218 60395243 -123893419 + (TAA)n Simple_repeat Simple_repeat 2 26 0 195 217 22 22 chr4 60395295 60395341 -123893321 + L2 LINE L2 3219 3264 -8 21 36 0 0 chr4 60395819 60395847 -123892815 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr4 60395901 60395930 -123892732 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr4 60398357 60398392 -123890270 + AT_rich Low_complexity Low_complexity 1 35 0 24 85 0 0 chr4 60398768 60398827 -123889835 + AT_rich Low_complexity Low_complexity 1 59 0 352 376 0 13 chr4 60398989 60399146 -123889516 - MIR3 SINE MIR 0 208 54 2306 85 3 3 chr4 60399479 60399785 -123888877 - AluSc SINE Alu -2 307 2 2291 67 0 32 chr4 60400022 60400335 -123888327 + AluY SINE Alu 1 303 -8 1583 242 83 42 chr4 60400555 60400684 -123887978 + L1ME1 LINE L1 5590 5712 -454 1973 167 40 26 chr4 60400684 60401104 -123887558 + MSTB LTR MaLR 1 426 0 1583 242 83 42 chr4 60401104 60401454 -123887208 + L1ME1 LINE L1 5712 6089 -77 32 67 0 0 chr4 60402021 60402081 -123886581 + AT_rich Low_complexity Low_complexity 1 60 0 334 393 68 8 chr4 60402849 60403101 -123885561 + L2 LINE L2 2447 2713 -601 355 268 210 37 chr4 60403192 60403487 -123885175 - L2 LINE L2 -120 3193 2848 421 259 264 0 chr4 60403511 60403708 -123884954 - L2 LINE L2 -657 2657 2409 394 178 0 0 chr4 60403792 60403865 -123884797 - Charlie7 DNA MER1_type -1372 1240 1168 328 264 0 0 chr4 60403916 60404003 -123884659 - MIR SINE MIR -89 173 87 8677 54 5 1 chr4 60404131 60405198 -123883464 + MER11C LTR ERVK 1 1071 0 268 252 81 27 chr4 60405199 60405310 -123883352 + L1ME1 LINE L1 6045 6161 -5 2046 267 65 18 chr4 60405322 60406116 -123882546 - Charlie7 DNA MER1_type -1466 1146 315 222 91 0 0 chr4 60406270 60406303 -123882359 + (CA)n Simple_repeat Simple_repeat 2 34 0 180 111 0 0 chr4 60406322 60406349 -123882313 + (CATATA)n Simple_repeat Simple_repeat 3 29 0 1551 194 75 6 chr4 60407102 60407448 -123881214 - L1MB7 LINE L1 -9 6175 5806 25 51 0 0 chr4 60407748 60407787 -123880875 + AT_rich Low_complexity Low_complexity 1 39 0 27 73 0 0 chr4 60408919 60408974 -123879688 + AT_rich Low_complexity Low_complexity 1 55 0 21 82 0 0 chr4 60409070 60409119 -123879543 + AT_rich Low_complexity Low_complexity 1 49 0 28 71 0 0 chr4 60409661 60409717 -123878945 + AT_rich Low_complexity Low_complexity 1 56 0 24 32 0 0 chr4 60409921 60409952 -123878710 + AT_rich Low_complexity Low_complexity 1 31 0 369 0 0 0 chr4 60410856 60410897 -123877765 + (CA)n Simple_repeat Simple_repeat 2 42 0 272 266 0 43 chr4 60411299 60411393 -123877269 - MARNA DNA Mariner -357 229 140 26 30 0 0 chr4 60411607 60411640 -123877022 + AT_rich Low_complexity Low_complexity 1 33 0 395 230 101 54 chr4 60411813 60411961 -123876701 - L2 LINE L2 -1 3312 3158 222 91 0 0 chr4 60411961 60411994 -123876668 + (CA)n Simple_repeat Simple_repeat 2 34 0 201 74 0 0 chr4 60412013 60412040 -123876622 + (CATATA)n Simple_repeat Simple_repeat 3 29 0 180 273 0 0 chr4 60412160 60412204 -123876458 - MIR SINE MIR -72 190 147 500 268 32 17 chr4 60413844 60414081 -123874581 + L1M4 LINE L1 11 500 -6355 * 1424 208 25 39 chr4 60414064 60414502 -123874160 + L1M4 LINE L1 3522 3953 -3004 246 116 0 0 chr4 60414956 60415004 -123873658 + (CATAC)n Simple_repeat Simple_repeat 1 91 0 246 116 0 0 chr4 60415004 60415047 -123873615 + (CATAC)n Simple_repeat Simple_repeat 2 44 0 314 237 11 65 chr4 60415095 60415188 -123873474 - L2 LINE L2 -22 3250 3163 42142 34 24 1 chr4 60418942 60424951 -123863711 + L1PA3 LINE L1 5 6152 -3 22 0 0 0 chr4 60427649 60427671 -123860991 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 60427819 60427844 -123860818 + AT_rich Low_complexity Low_complexity 1 25 0 2037 101 35 11 chr4 60427844 60428131 -123860531 - AluSc SINE Alu -15 294 1 506 303 114 9 chr4 60428274 60428485 -123860177 + MIR SINE MIR 20 252 -10 269 333 49 0 chr4 60428550 60428652 -123860010 - MIR SINE MIR -94 168 62 1791 165 39 14 chr4 60429382 60429739 -123858923 + Tigger2a DNA MER2_type 4 369 -65 26 30 0 0 chr4 60429843 60429876 -123858786 + AT_rich Low_complexity Low_complexity 1 33 0 1891 145 3 0 chr4 60429887 60430170 -123858492 + AluSx SINE Alu 1 284 -28 40 49 0 0 chr4 60430170 60430231 -123858431 + AT_rich Low_complexity Low_complexity 1 61 0 322 324 28 0 chr4 60430520 60430628 -123858034 - MIR SINE MIR -22 240 130 217 250 155 52 chr4 60430933 60431049 -123857613 - MIR SINE MIR -95 167 40 432 352 31 18 chr4 60431089 60431316 -123857346 + MIR SINE MIR 3 232 -30 312 354 157 28 chr4 60431531 60431895 -123856767 - L3b LINE CR1 -43 1540 1130 2326 288 110 24 chr4 60432332 60433549 -123855113 - L2 LINE L2 -1 3312 1992 2571 42 0 0 chr4 60433564 60433870 -123854792 - AluY SINE Alu -5 306 1 523 250 9 0 chr4 60433886 60433994 -123854668 - L2 LINE L2 -552 2762 2654 446 310 38 6 chr4 60434005 60434163 -123854499 - L2 LINE L2 -1353 1961 1799 22 0 0 0 chr4 60434856 60434878 -123853784 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr4 60436205 60436246 -123852416 + AT_rich Low_complexity Low_complexity 1 41 0 182 317 89 10 chr4 60437024 60437125 -123851537 - MIR SINE MIR -66 142 34 237 33 0 0 chr4 60437585 60437615 -123851047 + (CA)n Simple_repeat Simple_repeat 1 30 0 700 307 8 0 chr4 60437876 60438133 -123850529 + MIR SINE MIR 2 260 -2 952 153 0 105 chr4 60438454 60438644 -123850018 + AluJo SINE Alu 10 179 -133 217 288 33 33 chr4 60438839 60438992 -123849670 + (TATATG)n Simple_repeat Simple_repeat 5 157 0 * 301 300 0 9 chr4 60438909 60439019 -123849643 + (TA)n Simple_repeat Simple_repeat 1 109 0 506 115 13 0 chr4 60439290 60439368 -123849294 - MADE1 DNA Mariner 0 80 2 1586 118 19 30 chr4 60439384 60439501 -123849161 - Tigger1 DNA MER2_type -2 2416 2299 2172 100 14 0 chr4 60439501 60439791 -123848871 + AluSx SINE Alu 1 294 -18 1586 118 19 30 chr4 60439791 60439936 -123848726 - Tigger1 DNA MER2_type -119 2299 2157 * 10518 137 22 34 chr4 60439933 60441724 -123846938 - Tigger1 DNA MER2_type -643 1775 5 196 319 0 43 chr4 60442043 60442137 -123846525 + L2 LINE L2 3223 3312 -1 222 203 186 0 chr4 60442330 60442389 -123846273 - L2 LINE L2 0 3313 3244 333 297 72 7 chr4 60442439 60442577 -123846085 - MIR SINE MIR 0 262 116 23 0 0 0 chr4 60443354 60443377 -123845285 + AT_rich Low_complexity Low_complexity 1 23 0 198 264 19 0 chr4 60445168 60445221 -123843441 - L3 LINE CR1 -317 1260 1207 1592 159 3 59 chr4 60445383 60445704 -123842958 - AluJo SINE Alu -9 303 1 315 0 0 0 chr4 60445842 60445877 -123842785 + (TG)n Simple_repeat Simple_repeat 2 36 0 323 103 0 17 chr4 60445887 60445945 -123842717 + (GA)n Simple_repeat Simple_repeat 2 58 0 435 281 0 0 chr4 60445969 60446065 -123842597 - FLAM_A SINE Alu -45 97 2 388 346 88 36 chr4 60446204 60446646 -123842016 - L3 LINE CR1 -658 919 455 22 0 0 0 chr4 60446804 60446826 -123841836 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr4 60447055 60447084 -123841578 + AT_rich Low_complexity Low_complexity 1 29 0 2147 81 0 37 chr4 60447088 60447411 -123841251 + AluSq SINE Alu 1 312 0 546 228 57 6 chr4 60448372 60448530 -123840132 + MER103 DNA DNA 1 166 0 233 259 136 13 chr4 60448586 60448697 -123839965 - MIR3 SINE MIR -50 158 28 210 344 16 8 chr4 60448719 60448841 -123839821 - L2 LINE L2 -2191 1123 1001 2098 129 19 40 chr4 60448978 60449350 -123839312 + THE1B LTR MaLR 1 364 0 22 0 0 0 chr4 60449797 60449819 -123838843 + AT_rich Low_complexity Low_complexity 1 22 0 273 220 98 53 chr4 60450050 60450182 -123838480 + L1ME4a LINE L1 5982 6119 -2 352 306 72 39 chr4 60450250 60450557 -123838105 + L1MC4a LINE L1 5569 5885 -1923 255 237 43 0 chr4 60450583 60450676 -123837986 + (TA)n Simple_repeat Simple_repeat 1 97 0 247 244 26 0 chr4 60451303 60451381 -123837281 + (TA)n Simple_repeat Simple_repeat 1 80 0 206 390 51 25 chr4 60451675 60451793 -123836869 - L2 LINE L2 0 3272 3152 314 237 11 65 chr4 60453567 60453660 -123835002 + L2 LINE L2 3163 3250 -22 246 116 0 0 chr4 60453696 60453708 -123834954 + (GTATG)n Simple_repeat Simple_repeat 1 55 0 246 116 0 0 chr4 60453708 60453751 -123834911 + (GTATG)n Simple_repeat Simple_repeat 2 44 0 387 0 0 0 chr4 60454750 60454793 -123833869 + (CA)n Simple_repeat Simple_repeat 2 44 0 2989 177 4 7 chr4 60454793 60455341 -123833321 + MER44D DNA MER2_type 3 603 -2 2432 59 3 0 chr4 60457626 60457929 -123830733 + AluY SINE Alu 1 304 -7 296 291 146 0 chr4 60458146 60458249 -123830413 - L2 LINE L2 -5 3267 3150 251 284 95 60 chr4 60458559 60458675 -123829987 - MIR SINE MIR -126 136 17 250 314 111 20 chr4 60459175 60459328 -123829334 - MIR SINE MIR -10 252 86 221 313 71 20 chr4 60459919 60460018 -123828644 + MER5A DNA MER1_type 2 105 -84 264 30 0 0 chr4 60460042 60460075 -123828587 + (CA)n Simple_repeat Simple_repeat 1 33 0 1794 129 7 45 chr4 60460169 60460479 -123828183 - AluSx SINE Alu -14 298 1 21 36 0 0 chr4 60461639 60461667 -123826995 + AT_rich Low_complexity Low_complexity 1 28 0 333 351 90 26 chr4 60463248 60463627 -123825035 + L1MC/D LINE L1 5299 5701 -2107 374 152 127 0 chr4 60463764 60463843 -123824819 - MLT2B1 LTR ERVL 0 515 427 283 192 0 0 chr4 60463843 60463895 -123824767 + LTR30 LTR ERV1 1 52 -670 953 70 169 0 chr4 60463895 60464037 -123824625 + LTR12 LTR ERV1 119 284 -430 290 253 11 0 chr4 60464038 60464129 -123824533 + LTR30 LTR ERV1 552 643 -79 721 100 0 0 chr4 60464131 60464231 -123824431 + LTR12 LTR ERV1 615 714 0 1854 186 21 16 chr4 60464231 60464614 -123824048 - MLT2B1 LTR ERVL -86 434 3 31 44 0 0 chr4 60465273 60465318 -123823344 + AT_rich Low_complexity Low_complexity 1 45 0 315 0 0 0 chr4 60468152 60468187 -123820475 + (CA)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr4 60468257 60468279 -123820383 + AT_rich Low_complexity Low_complexity 1 22 0 193 308 0 0 chr4 60468555 60468607 -123820055 + L2 LINE L2 3262 3313 0 251 284 95 60 chr4 60468707 60468823 -123819839 + MIR SINE MIR 17 136 -126 296 291 146 0 chr4 60469133 60469236 -123819426 + L2 LINE L2 3150 3267 -5 2183 119 0 0 chr4 60469453 60469755 -123818907 - AluSc SINE Alu -7 302 1 26 30 0 0 chr4 60469839 60469872 -123818790 + AT_rich Low_complexity Low_complexity 1 33 0 1951 137 63 26 chr4 60470553 60470904 -123817758 + THE1B LTR MaLR 1 364 0 10916 103 19 1 chr4 60470904 60472456 -123816206 + THE1B-int LTR MaLR 1 1580 0 2212 129 22 25 chr4 60472457 60472821 -123815841 + THE1B LTR MaLR 2 364 0 1761 153 40 35 chr4 60472965 60473311 -123815351 + MER7A DNA MER2_type 1 346 0 298 276 101 16 chr4 60473377 60473507 -123815155 - MIR SINE MIR -38 170 29 1706 196 71 50 chr4 60473555 60474026 -123814636 + MLT1D LTR MaLR 1 484 -21 1942 158 138 12 chr4 60474026 60474438 -123814224 + MLT2C2 LTR ERVL 1 464 0 1706 196 71 50 chr4 60474438 60474461 -123814201 + MLT1D LTR MaLR 484 505 0 1429 207 38 43 chr4 60474531 60474903 -123813759 - MLT1A2 LTR MaLR -4 370 1 21 36 0 0 chr4 60475024 60475052 -123813610 + AT_rich Low_complexity Low_complexity 1 28 0 289 349 102 6 chr4 60475716 60475882 -123812780 + MIR SINE MIR 70 251 -11 23 54 0 0 chr4 60475906 60475943 -123812719 + AT_rich Low_complexity Low_complexity 1 37 0 264 277 180 30 chr4 60476291 60476469 -123812193 - MIR SINE MIR -42 220 18 189 0 0 0 chr4 60476545 60476566 -123812096 + (TG)n Simple_repeat Simple_repeat 2 22 0 1999 129 0 57 chr4 60476572 60476890 -123811772 - AluSx SINE Alu -9 303 4 631 348 91 32 chr4 60478058 60478284 -123810378 + L2 LINE L2 2550 2761 -552 523 101 13 0 chr4 60478284 60478363 -123810299 + MADE1 DNA Mariner 1 80 0 631 348 91 32 chr4 60478363 60478863 -123809799 + L2 LINE L2 2761 3311 -2 225 306 7 109 chr4 60479611 60479758 -123808904 + L2 LINE L2 2946 3077 -195 1000 217 9 23 chr4 60479908 60480125 -123808537 - MER20 DNA MER1_type -5 214 1 2208 104 7 0 chr4 60480279 60480578 -123808084 + AluSp SINE Alu 1 301 -12 2579 205 9 16 chr4 60480637 60481190 -123807472 + MER6A DNA MER2_type -15 535 -70 21 0 0 0 chr4 60482277 60482298 -123806364 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr4 60482671 60482699 -123805963 + AT_rich Low_complexity Low_complexity 1 28 0 1940 152 7 3 chr4 60483196 60483493 -123805169 + AluSx SINE Alu 1 298 -14 1635 148 9 71 chr4 60483497 60483821 -123804841 + AluJb SINE Alu 1 304 -8 617 128 0 39 chr4 60483940 60484042 -123804620 - AluJ/FLAM SINE Alu -214 98 1 3134 175 4 6 chr4 60484236 60484779 -123803883 - MER44D DNA MER2_type -6 599 3 426 20 0 0 chr4 60484779 60484830 -123803832 + (TG)n Simple_repeat Simple_repeat 2 52 0 564 189 40 27 chr4 60485037 60485185 -123803477 - MER104 DNA Tc2 0 180 31 1971 122 22 9 chr4 60485185 60485506 -123803156 - Tigger5 DNA MER2_type 0 2323 1999 910 190 57 47 chr4 60485498 60485709 -123802953 - Tigger5 DNA MER2_type -2108 215 3 * 370 285 105 12 chr4 60485739 60485911 -123802751 - MIR SINE MIR -26 236 49 354 200 113 0 chr4 60488061 60488141 -123800521 + L1MC4 LINE L1 6615 6703 -1339 1239 193 86 52 chr4 60488157 60488483 -123800179 + MER2 DNA MER2_type 2 338 -7 483 18 0 0 chr4 60488483 60488539 -123800123 + (TG)n Simple_repeat Simple_repeat 2 57 0 615 96 17 26 chr4 60488952 60489067 -123799595 + (TTCC)n Simple_repeat Simple_repeat 3 116 0 833 208 13 0 chr4 60489071 60489220 -123799442 - FRAM SINE Alu -28 148 1 399 291 249 0 chr4 60489749 60489938 -123798724 - MIR SINE MIR -8 254 19 34 55 0 0 chr4 60490695 60490750 -123797912 + AT_rich Low_complexity Low_complexity 1 55 0 244 323 43 11 chr4 60491089 60491182 -123797480 + MLT1J LTR MaLR 106 201 -310 21 0 0 0 chr4 60493109 60493130 -123795532 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr4 60493547 60493576 -123795086 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr4 60493638 60493667 -123794995 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr4 60493758 60493787 -123794875 + AT_rich Low_complexity Low_complexity 1 29 0 201 209 23 0 chr4 60494853 60494896 -123793766 + A-rich Low_complexity Low_complexity 4 47 0 22 0 0 0 chr4 60494918 60494940 -123793722 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr4 60497637 60497664 -123790998 + AT_rich Low_complexity Low_complexity 1 27 0 384 338 65 14 chr4 60498731 60499006 -123789656 - L1ME4a LINE L1 -122 5999 5711 2326 91 3 3 chr4 60499345 60499654 -123789008 + AluSc SINE Alu 1 309 0 323 241 12 118 chr4 60499745 60499915 -123788747 - MIR SINE MIR -33 229 78 198 153 288 0 chr4 60500149 60500208 -123788454 - MIR3 SINE MIR -5 203 128 251 311 0 0 chr4 60500223 60500284 -123788378 + L2 LINE L2 3008 3068 -245 191 225 0 0 chr4 60500306 60500346 -123788316 + L2 LINE L2 3233 3272 0 2050 137 3 10 chr4 60500946 60501259 -123787403 + AluSx SINE Alu 1 311 -1 24 0 0 0 chr4 60501913 60501937 -123786725 + AT_rich Low_complexity Low_complexity 1 24 0 430 360 0 34 chr4 60501959 60502137 -123786525 - MIR SINE MIR -56 206 35 23 0 0 0 chr4 60502222 60502245 -123786417 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr4 60502285 60502310 -123786352 + AT_rich Low_complexity Low_complexity 1 25 0 308 321 143 20 chr4 60502420 60502616 -123786046 - MIR SINE MIR -10 252 33 30 27 0 0 chr4 60502958 60502995 -123785667 + AT_rich Low_complexity Low_complexity 1 37 0 336 202 0 160 chr4 60504009 60504128 -123784534 - MER102b DNA MER1_type -9 332 233 248 221 18 150 chr4 60504695 60504808 -123783854 - MIR SINE MIR -68 140 43 1207 158 27 46 chr4 60504814 60505073 -123783589 - AluJo SINE Alu -21 291 38 242 268 247 21 chr4 60505212 60505309 -123783353 - L2 LINE L2 -6 3266 3148 28 0 0 0 chr4 60505899 60505927 -123782735 + AT_rich Low_complexity Low_complexity 1 28 0 660 242 88 0 chr4 60506277 60506459 -123782203 - MIR SINE MIR -37 225 28 454 305 73 13 chr4 60509394 60509545 -123779117 + MIR3 SINE MIR 38 197 -11 22 35 0 0 chr4 60516153 60516182 -123772480 + AT_rich Low_complexity Low_complexity 1 29 0 350 282 279 25 chr4 60516914 60517237 -123771425 + L3 LINE CR1 147 551 -1026 371 325 56 67 chr4 60517406 60517674 -123770988 + L2 LINE L2 2814 3078 -194 467 248 97 39 chr4 60517886 60518092 -123770570 - MER2 DNA MER2_type -6 339 122 850 159 0 21 chr4 60518092 60518237 -123770425 + FLAM_C SINE Alu 1 142 -1 512 215 0 19 chr4 60518244 60518351 -123770311 + AluJb SINE Alu 120 224 -88 1796 186 0 0 chr4 60518401 60518696 -123769966 + AluJb SINE Alu 4 298 -14 434 294 185 14 chr4 60518781 60518992 -123769670 - MIR SINE MIR -13 249 3 2421 36 4 0 chr4 60519954 60520281 -123768381 - AluY SINE Alu 0 328 1 327 335 112 9 chr4 60520819 60521034 -123767628 - MIR SINE MIR -12 250 14 279 54 0 0 chr4 60521550 60521587 -123767075 + (CA)n Simple_repeat Simple_repeat 1 37 0 201 389 12 43 chr4 60523413 60523575 -123765087 + L3 LINE CR1 117 273 -1304 329 266 168 12 chr4 60523661 60523834 -123764828 + MIR SINE MIR 2 201 -61 231 216 20 0 chr4 60525102 60525153 -123763509 + Charlie8 DNA MER1_type 2364 2415 -2 293 250 0 0 chr4 60525489 60525553 -123763109 - MIR3 SINE MIR -3 205 142 207 100 0 0 chr4 60525702 60525732 -123762930 + (TG)n Simple_repeat Simple_repeat 1 30 0 2336 96 3 6 chr4 60527241 60527555 -123761107 + AluSq SINE Alu 1 313 0 2032 237 51 20 chr4 60527851 60528403 -123760259 + MLT1G LTR MaLR 19 587 -3 464 299 50 25 chr4 60528460 60528661 -123760001 - MIR SINE MIR 0 262 57 204 384 50 44 chr4 60529026 60529185 -123759477 - L3 LINE CR1 -2 1575 1416 3257 158 7 14 chr4 60529340 60529897 -123758765 + MER6A DNA MER2_type 53 605 0 4836 173 55 47 chr4 60529900 60531344 -123757318 - L1MC2 LINE L1 -73 6271 4817 1586 166 13 16 chr4 60531344 60531651 -123757011 - L1MC1 LINE L1 0 6333 6028 4836 173 55 47 chr4 60531651 60531781 -123756881 - L1MC2 LINE L1 -1527 4817 4690 452 212 44 36 chr4 60531904 60532041 -123756621 + MLT1J1 LTR MaLR 1 138 -308 26 30 0 0 chr4 60535848 60535881 -123752781 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr4 60535897 60535925 -123752737 + AT_rich Low_complexity Low_complexity 1 28 0 270 351 53 20 chr4 60535925 60536076 -123752586 + MIR SINE MIR 19 174 -88 218 328 0 0 chr4 60536276 60536340 -123752322 + MIR SINE MIR 79 142 -120 634 237 9 28 chr4 60536545 60536756 -123751906 + L1ME2 LINE L1 5952 6158 -6 2195 93 0 3 chr4 60537022 60537312 -123751350 + AluY SINE Alu 1 289 -22 34 0 0 0 chr4 60537312 60537346 -123751316 + AT_rich Low_complexity Low_complexity 1 34 0 268 288 90 11 chr4 60537358 60537579 -123751083 + MER41E LTR ERV1 54 431 -204 395 263 10 0 chr4 60537809 60537908 -123750754 + Charlie8 DNA MER1_type 134 233 -2184 654 269 73 27 chr4 60540001 60540220 -123748442 - MIR SINE MIR -9 253 25 396 308 111 29 chr4 60540404 60540719 -123747943 - MARNA DNA Mariner -232 354 14 2254 96 0 0 chr4 60542363 60542665 -123745997 + AluSg1 SINE Alu 6 307 -2 25 0 0 0 chr4 60544736 60544761 -123743901 + AT_rich Low_complexity Low_complexity 1 25 0 182 323 62 0 chr4 60545347 60545412 -123743250 + MIR SINE MIR 75 143 -119 336 221 0 0 chr4 60545543 60545620 -123743042 + (TGG)n Simple_repeat Simple_repeat 3 79 0 22 56 0 0 chr4 60545928 60545964 -123742698 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr4 60546601 60546625 -123742037 + AT_rich Low_complexity Low_complexity 1 24 0 317 230 106 26 chr4 60547220 60547333 -123741329 - MIR SINE MIR -21 241 120 707 266 77 90 chr4 60547339 60547817 -123740845 + MLT1J LTR MaLR 6 477 -34 274 324 93 0 chr4 60549830 60549938 -123738724 + L2 LINE L2 3193 3310 -3 24 0 0 0 chr4 60550353 60550377 -123738285 + AT_rich Low_complexity Low_complexity 1 24 0 27 73 0 0 chr4 60550469 60550524 -123738138 + AT_rich Low_complexity Low_complexity 1 55 0 262 366 134 38 chr4 60553975 60554237 -123734425 + L2 LINE L2 2981 3267 -5 23 0 0 0 chr4 60554263 60554286 -123734376 + AT_rich Low_complexity Low_complexity 1 23 0 429 284 71 43 chr4 60554764 60554975 -123733687 - L2 LINE L2 0 3313 3097 288 402 88 8 chr4 60554965 60555216 -123733446 - L2 LINE L2 -337 2977 2707 * 26 64 0 0 chr4 60555533 60555580 -123733082 + AT_rich Low_complexity Low_complexity 1 47 0 282 267 230 12 chr4 60556218 60556379 -123732283 - L2 LINE L2 -5 3308 3113 1180 198 15 122 chr4 60556710 60557119 -123731543 + MLT1A1 LTR MaLR 1 365 0 287 269 173 0 chr4 60558330 60558434 -123730228 - MIR SINE MIR -52 210 89 344 77 19 0 chr4 60558622 60558674 -123729988 + (CA)n Simple_repeat Simple_repeat 2 54 0 2266 100 3 0 chr4 60560801 60561112 -123727550 + AluSq SINE Alu 1 312 -1 259 360 131 18 chr4 60562415 60562620 -123726042 + L2 LINE L2 1992 2172 -1142 2618 93 3 0 chr4 60562620 60562974 -123725688 + THE1A LTR MaLR 1 355 0 259 360 131 18 chr4 60562974 60563387 -123725275 + L2 LINE L2 2172 2680 -634 191 35 0 35 chr4 60563394 60563423 -123725239 + (CA)n Simple_repeat Simple_repeat 2 29 0 260 245 26 103 chr4 60563532 60563687 -123724975 + L2 LINE L2 3002 3144 -169 559 291 35 87 chr4 60564322 60564502 -123724160 - MIR SINE MIR -1 261 96 2226 114 0 3 chr4 60564502 60564799 -123723863 + AluSq SINE Alu 1 296 -17 559 291 35 87 chr4 60564799 60564872 -123723790 - MIR SINE MIR -166 96 21 542 307 6 12 chr4 60564934 60565097 -123723565 - MIR SINE MIR -18 244 83 819 147 8 0 chr4 60566433 60566562 -123722100 + AluJb SINE Alu 7 136 -176 254 153 17 0 chr4 60567148 60567207 -123721455 + (TA)n Simple_repeat Simple_repeat 1 60 0 1344 186 74 15 chr4 60567207 60567476 -123721186 - AluJo SINE Alu -27 285 1 1650 149 4 0 chr4 60568120 60568369 -123720293 + AluSq SINE Alu 1 250 -63 219 326 98 11 chr4 60568375 60568467 -123720195 + L3b LINE CR1 1306 1405 -178 862 246 5 5 chr4 60569002 60569213 -123719449 + L1MD3 LINE L1 7777 7987 -8 1617 201 0 10 chr4 60569603 60569902 -123718760 + AluJo SINE Alu 1 296 -16 231 200 40 0 chr4 60569985 60570035 -123718627 - L2 LINE L2 -1 3271 3220 58 65 0 0 chr4 60573007 60573114 -123715548 + AT_rich Low_complexity Low_complexity 1 107 0 583 128 83 0 chr4 60574700 60574809 -123713853 + L1MA5A LINE L1 6179 6296 -1 420 316 102 6 chr4 60576595 60576772 -123711890 - MIR SINE MIR -57 205 12 2268 92 0 13 chr4 60576971 60577285 -123711377 - AluSq SINE Alu -2 311 2 549 340 74 15 chr4 60578078 60578402 -123710260 + L2 LINE L2 2629 2971 -343 1477 151 26 74 chr4 60578487 60578799 -123709863 + AluJo SINE Alu 1 297 -15 212 286 32 0 chr4 60579755 60579818 -123708844 + L2 LINE L2 2996 3060 -212 686 250 23 6 chr4 60580182 60580358 -123708304 - MIR SINE MIR -3 259 81 23 54 0 0 chr4 60580535 60580572 -123708090 + AT_rich Low_complexity Low_complexity 1 37 0 2411 65 0 3 chr4 60581261 60581571 -123707091 + AluY SINE Alu 1 309 -2 233 231 0 19 chr4 60581586 60581638 -123707024 + MIR SINE MIR 63 113 -95 1545 199 0 14 chr4 60582163 60582459 -123706203 - AluJo SINE Alu -20 292 1 421 307 98 12 chr4 60583187 60583431 -123705231 + L1ME4a LINE L1 5592 5856 -265 513 326 96 4 chr4 60588673 60588912 -123699750 - MIR SINE MIR 0 262 2 308 164 18 0 chr4 60589259 60589314 -123699348 - Charlie1 DNA MER1_type -1 2760 2705 5847 58 3 0 chr4 60589318 60590042 -123698620 + L1PA7 LINE L1 5409 6134 -20 198 0 0 0 chr4 60590045 60590067 -123698595 + (TAA)n Simple_repeat Simple_repeat 3 24 0 2042 144 0 3 chr4 60590088 60590413 -123698249 - AluSx SINE Alu 0 312 1 1102 215 22 0 chr4 60590474 60590702 -123697960 - Charlie1 DNA MER1_type -2523 238 6 21 0 0 0 chr4 60591446 60591467 -123697195 + AT_rich Low_complexity Low_complexity 1 21 0 224 77 26 0 chr4 60594332 60594371 -123694291 + (CA)n Simple_repeat Simple_repeat 2 41 0 27 0 0 0 chr4 60594551 60594578 -123694084 + GC_rich Low_complexity Low_complexity 1 27 0 220 208 0 0 chr4 60595801 60595849 -123692813 + (CTG)n Simple_repeat Simple_repeat 2 49 0 21 71 0 0 chr4 60596175 60596217 -123692445 + GC_rich Low_complexity Low_complexity 1 42 0 203 233 0 0 chr4 60596519 60596562 -123692100 + (CGG)n Simple_repeat Simple_repeat 2 44 0 228 67 0 0 chr4 60596581 60596611 -123692051 + (CGG)n Simple_repeat Simple_repeat 3 32 0 404 184 10 0 chr4 60597030 60597128 -123691534 + CT-rich Low_complexity Low_complexity 1 99 0 240 286 114 0 chr4 60597492 60597597 -123691065 + MIR3 SINE MIR 83 199 -9 181 339 0 0 chr4 60597844 60597900 -123690762 + L2 LINE L2 2999 3054 -218 232 238 0 0 chr4 60598701 60598764 -123689898 - L1MC4 LINE L1 -1340 6702 6640 347 328 57 80 chr4 60599478 60599944 -123688718 + L1MC/D LINE L1 5272 5736 -442 580 263 50 22 chr4 60600081 60600260 -123688402 - MLT1J LTR MaLR 0 511 328 1512 214 43 14 chr4 60602051 60602402 -123686260 + MLT1A1 LTR MaLR 5 365 0 4654 137 3 4 chr4 60602864 60603601 -123685061 + HSMAR2 DNA Mariner 2 737 -565 1058 94 31 0 chr4 60603597 60603757 -123684905 + HSMAR2 DNA Mariner 1134 1298 -4 * 236 204 0 20 chr4 60603761 60603810 -123684852 + L2 LINE L2 3220 3267 -5 21 0 0 0 chr4 60603830 60603851 -123684811 + AT_rich Low_complexity Low_complexity 1 21 0 341 244 159 23 chr4 60603939 60604115 -123684547 - MARNA DNA Mariner -60 526 327 21 0 0 0 chr4 60605261 60605282 -123683380 + AT_rich Low_complexity Low_complexity 1 21 0 258 160 0 0 chr4 60605353 60605403 -123683259 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 744 315 105 3 chr4 60605706 60606011 -123682651 - MLT1J1 LTR MaLR -107 339 4 436 288 11 55 chr4 60606111 60606293 -123682369 + MIR3 SINE MIR 6 178 -40 404 271 32 102 chr4 60606550 60606922 -123681740 + LTR16A LTR ERVL 90 435 -15 737 275 173 4 chr4 60606943 60607018 -123681644 + L2 LINE L2 2641 2702 -611 1614 195 85 40 chr4 60607018 60607424 -123681238 - MLT1C LTR MaLR -1 466 37 2201 99 3 23 chr4 60607424 60607727 -123680935 - AluSx SINE Alu -15 297 1 1614 195 85 40 chr4 60607727 60607766 -123680896 - MLT1C LTR MaLR -430 37 1 737 275 173 4 chr4 60607766 60608141 -123680521 + L2 LINE L2 2702 3151 -162 676 244 83 31 chr4 60608152 60608406 -123680256 + ORSL DNA AcHobo 9 275 0 461 326 7 7 chr4 60608406 60608550 -123680112 + L2 LINE L2 3170 3313 0 2694 132 9 34 chr4 60609840 60610279 -123678383 - MSTC LTR MaLR 0 428 1 1104 153 0 0 chr4 60610849 60611051 -123677611 - L1MA6 LINE L1 -6 6294 6093 4623 225 42 20 chr4 60611057 60612556 -123676106 - L1M1 LINE L1 -4161 3405 2055 212 167 19 0 chr4 60613036 60613074 -123675588 + (TTAA)n Simple_repeat Simple_repeat 1 42 -13 2020 129 11 7 chr4 60613074 60613361 -123675301 - AluSx SINE Alu -24 288 1 212 167 19 0 chr4 60613361 60613376 -123675286 + (TTAA)n Simple_repeat Simple_repeat 42 55 0 219 211 28 42 chr4 60613755 60613826 -123674836 + GA-rich Low_complexity Low_complexity 1 70 0 225 278 285 7 chr4 60614547 60614691 -123673971 + MIR SINE MIR 47 230 -32 * 292 239 65 43 chr4 60614676 60614768 -123673894 - L2 LINE L2 -36 3277 3184 230 239 336 9 chr4 60615755 60615868 -123672794 + MIR SINE MIR 113 262 0 268 245 49 39 chr4 60615934 60616036 -123672626 + L1ME4a LINE L1 6001 6103 -18 1327 286 59 36 chr4 60616366 60616916 -123671746 - MLT1F1 LTR MaLR -1 566 3 231 261 172 67 chr4 60617185 60617319 -123671343 - MIR3 SINE MIR -23 185 38 283 209 30 0 chr4 60617376 60617443 -123671219 + MLT1J1 LTR MaLR 378 446 0 310 250 19 39 chr4 60617666 60617770 -123670892 + MLT1J1 LTR MaLR 345 446 0 357 331 60 27 chr4 60617901 60618085 -123670577 - MIR SINE MIR -3 259 70 627 314 135 20 chr4 60618185 60618777 -123669885 - L2 LINE L2 -1113 2201 1542 525 246 66 89 chr4 60619067 60619179 -123669483 + L1ME4a LINE L1 5589 5702 -419 3586 163 30 11 chr4 60619179 60619837 -123668825 + LTR51 LTR ERV1 1 671 0 525 246 66 89 chr4 60619837 60620119 -123668543 + L1ME4a LINE L1 5702 5974 -147 1636 208 26 26 chr4 60620135 60620486 -123668176 - MLT1A1 LTR MaLR 0 365 15 886 211 98 36 chr4 60621490 60621826 -123666836 - LTR37A LTR ERV1 -51 375 19 770 270 43 66 chr4 60622159 60622809 -123665853 - MER31-int LTR ERV1 -879 4057 3337 327 296 0 0 chr4 60623087 60623168 -123665494 - MER5B DNA MER1_type -97 81 1 652 249 32 60 chr4 60623368 60623617 -123665045 - MER31-int LTR ERV1 -1870 3066 2825 2349 100 0 0 chr4 60623660 60623959 -123664703 - AluSx SINE Alu -13 299 1 205 214 24 0 chr4 60624438 60624480 -123664182 + (CATATA)n Simple_repeat Simple_repeat 5 47 0 25 31 0 0 chr4 60624531 60624563 -123664099 + AT_rich Low_complexity Low_complexity 1 32 0 30 45 0 0 chr4 60624752 60624796 -123663866 + AT_rich Low_complexity Low_complexity 1 44 0 1001 215 173 47 chr4 60625896 60625981 -123662681 - MER69 DNA AcHobo 0 2526 2453 1992 126 3 3 chr4 60625981 60626275 -123662387 + AluSc SINE Alu 1 294 -15 1001 215 173 47 chr4 60626275 60626658 -123662004 - MER69 DNA AcHobo -73 2453 1999 * 1361 273 108 12 chr4 60626645 60627162 -123661500 - MER69 DNA AcHobo -658 568 2 594 295 28 28 chr4 60627163 60627183 -123661479 - MIR SINE MIR -33 229 210 5006 139 11 2 chr4 60627183 60628860 -123659802 - L1PA16 LINE L1 0 6166 4445 594 295 28 28 chr4 60628860 60629056 -123659606 - MIR SINE MIR -51 211 13 1844 231 20 24 chr4 60629973 60630432 -123658230 - MLT1C LTR MaLR 0 467 11 189 328 31 0 chr4 60630726 60630790 -123657872 + L2 LINE L2 3244 3309 -4 628 228 17 136 chr4 60631462 60631762 -123656900 - MIR SINE MIR -2 260 1 279 330 11 11 chr4 60632692 60632783 -123655879 - MIR SINE MIR -152 110 20 21 36 0 0 chr4 60633543 60633571 -123655091 + AT_rich Low_complexity Low_complexity 1 28 0 246 345 14 7 chr4 60634290 60634435 -123654227 - L1M4b LINE L1 -5387 1472 1327 1743 243 48 38 chr4 60634811 60635421 -123653241 - MLT1E3 LTR MaLR -14 610 6 2083 122 0 0 chr4 60635557 60635835 -123652827 - AluSx SINE Alu -26 286 9 2306 151 40 21 chr4 60636306 60636730 -123651932 + MSTB1 LTR MaLR 1 432 0 1691 112 139 0 chr4 60636962 60637229 -123651433 + AluSq SINE Alu 1 304 -9 1593 245 18 18 chr4 60637680 60638076 -123650586 + MSTD LTR MaLR 1 396 0 23 68 0 0 chr4 60638089 60638133 -123650529 + AT_rich Low_complexity Low_complexity 1 44 0 1949 149 3 0 chr4 60638493 60638795 -123649867 + AluSx SINE Alu 1 303 -9 216 272 158 9 chr4 60639100 60639214 -123649448 + MIR SINE MIR 76 206 -56 2106 120 16 0 chr4 60640254 60640562 -123648100 + AluSq SINE Alu 1 313 0 189 0 0 0 chr4 60640579 60640600 -123648062 + (T)n Simple_repeat Simple_repeat 1 21 0 286 81 0 0 chr4 60641334 60641371 -123647291 - AluJb SINE Alu -12 290 254 1365 198 8 0 chr4 60642901 60643144 -123645518 - AluJb SINE Alu -41 271 27 2364 87 3 0 chr4 60643336 60643636 -123645026 - AluSp SINE Alu -12 301 1 212 167 0 0 chr4 60643911 60643953 -123644709 + (TAA)n Simple_repeat Simple_repeat 2 43 0 190 302 32 0 chr4 60644979 60645042 -123643620 - MIR SINE MIR -74 188 124 208 171 24 0 chr4 60646374 60646415 -123642247 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 682 302 33 49 chr4 60646638 60646943 -123641719 + MLT1K LTR MaLR 123 422 -166 221 196 18 0 chr4 60646963 60647019 -123641643 + (CATA)n Simple_repeat Simple_repeat 3 59 0 24 32 0 0 chr4 60647803 60647834 -123640828 + AT_rich Low_complexity Low_complexity 1 31 0 563 253 41 0 chr4 60648512 60648658 -123640004 - MER58B DNA MER1_type 0 341 190 282 267 0 0 chr4 60648745 60648805 -123639857 + MER63 DNA MER1_type 689 748 -313 2058 113 0 20 chr4 60650680 60650982 -123637680 - AluSg SINE Alu -14 296 1 600 188 8 45 chr4 60651619 60651752 -123636910 + MLT1B LTR MaLR 1 128 -262 577 309 81 13 chr4 60652543 60652779 -123635883 - MIR SINE MIR 0 262 11 365 252 104 17 chr4 60652999 60653114 -123635548 + MLT1J1 LTR MaLR 9 133 -313 352 278 53 71 chr4 60653243 60653412 -123635250 + MLT1J2 LTR MaLR 241 406 -44 401 296 37 37 chr4 60653945 60654080 -123634582 + MIR SINE MIR 20 154 -108 2161 119 3 0 chr4 60654320 60654631 -123634031 - AluSx SINE Alu 0 312 1 200 292 15 46 chr4 60654845 60654910 -123633752 - MIR SINE MIR -92 116 54 736 258 72 5 chr4 60654915 60655124 -123633538 - MIR SINE MIR 0 262 40 24 0 0 0 chr4 60655445 60655469 -123633193 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr4 60655567 60655590 -123633072 + AT_rich Low_complexity Low_complexity 1 23 0 2065 113 61 0 chr4 60656837 60657130 -123631532 + AluSx SINE Alu 1 311 -1 233 277 0 0 chr4 60658308 60658355 -123630307 + L2 LINE L2 3215 3261 -11 271 154 0 0 chr4 60658380 60658419 -123630243 - MLT2B2 LTR ERVL -118 397 359 1873 155 88 37 chr4 60658984 60659287 -123629375 - MSTA LTR MaLR 0 428 97 2204 74 0 20 chr4 60659287 60659583 -123629079 + AluY SINE Alu 17 306 -5 1873 155 88 37 chr4 60659583 60659686 -123628976 - MSTA LTR MaLR -331 97 1 30 0 0 0 chr4 60660077 60660107 -123628555 + AT_rich Low_complexity Low_complexity 1 30 0 192 77 0 0 chr4 60660577 60660603 -123628059 + (TG)n Simple_repeat Simple_repeat 1 26 0 572 269 72 36 chr4 60660642 60660891 -123627771 + L1ME1 LINE L1 5891 6148 -18 8164 37 11 0 chr4 60661067 60662831 -123625831 - L1PA4 LINE L1 -4 6151 4371 522 370 59 3 chr4 60663370 60663675 -123624987 + L2 LINE L2 2399 2720 -594 1573 186 3 3 chr4 60664210 60664519 -123624143 - AluJb SINE Alu 0 309 1 635 140 44 0 chr4 60665684 60665798 -123622864 - L1PA13 LINE L1 -2 6161 6043 21 0 0 0 chr4 60665810 60665831 -123622831 + AT_rich Low_complexity Low_complexity 1 21 0 24 77 0 0 chr4 60666235 60666287 -123622375 + AT_rich Low_complexity Low_complexity 1 52 0 2738 100 62 7 chr4 60666542 60666922 -123621740 + MLT2A1 LTR ERVL 1 408 -36 405 0 0 0 chr4 60666922 60666967 -123621695 + (TA)n Simple_repeat Simple_repeat 2 46 0 2738 100 62 7 chr4 60666967 60667007 -123621655 + MLT2A1 LTR ERVL 408 444 0 2073 251 19 19 chr4 60667106 60667637 -123621025 + MLT1F LTR MaLR 12 542 0 523 237 0 30 chr4 60669001 60669136 -123619526 + LTR67 LTR ERVL 427 557 0 2399 98 5 120 chr4 60669503 60669952 -123618710 - THE1C-int LTR MaLR -1183 397 1 2026 147 50 8 chr4 60669952 60670312 -123618350 - THE1C LTR MaLR 0 375 1 3770 216 34 25 chr4 60670312 60671696 -123616966 + L1MB7 LINE L1 4769 6165 -19 411 345 68 40 chr4 60671787 60672039 -123616623 + L1MC3 LINE L1 414 672 -5750 250 258 32 24 chr4 60672416 60672540 -123616122 + L1MC3 LINE L1 1029 1153 -5269 * 947 267 60 73 chr4 60672538 60673533 -123615129 + L1MC3 LINE L1 1049 2265 -4857 1654 204 0 10 chr4 60673533 60673847 -123614815 + AluJo SINE Alu 1 311 -1 947 267 60 73 chr4 60673847 60674052 -123614610 + L1MC3 LINE L1 2265 2471 -4651 281 168 21 21 chr4 60674219 60674314 -123614348 + (TA)n Simple_repeat Simple_repeat 2 96 0 1959 247 58 14 chr4 60674335 60674996 -123613666 + L1MC3 LINE L1 5220 5909 -1032 2006 258 115 63 chr4 60675008 60675091 -123613571 + L1MC3 LINE L1 6049 6126 -2454 728 271 6 0 chr4 60675091 60675261 -123613401 + FAM SINE Alu 1 171 -4 2006 258 115 63 chr4 60675261 60676486 -123612176 + L1MC3 LINE L1 6126 7425 -1155 1533 236 92 18 chr4 60676486 60676930 -123611732 + L1MD3 LINE L1 6802 7278 -717 571 224 0 0 chr4 60676930 60677037 -123611625 + MLT1F1 LTR MaLR 1 107 -460 304 131 0 0 chr4 60677074 60677121 -123611541 + L1MC4a LINE L1 7200 7282 -526 1137 238 42 42 chr4 60677124 60677456 -123611206 - MLT1C LTR MaLR 0 467 136 1773 164 0 0 chr4 60678080 60678360 -123610302 + AluJb SINE Alu 1 280 -32 326 42 21 0 chr4 60678360 60678408 -123610254 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 818 131 0 0 chr4 60679109 60679239 -123609423 + L1PA16 LINE L1 6036 6165 -1 1157 188 163 4 chr4 60679560 60679823 -123608839 - AluJb SINE Alu 0 305 5 1538 187 0 41 chr4 60679925 60680219 -123608443 + AluJo SINE Alu 1 282 -30 423 0 0 0 chr4 60680225 60680272 -123608390 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 191 114 29 0 chr4 60680819 60680854 -123607808 + CT-rich Low_complexity Low_complexity 2 37 0 260 304 141 0 chr4 60681250 60681342 -123607320 - MIR SINE MIR -133 129 25 220 163 20 20 chr4 60682387 60682436 -123606226 + CT-rich Low_complexity Low_complexity 1 49 0 305 304 29 0 chr4 60683923 60684025 -123604637 - L2 LINE L2 -5 3308 3204 381 288 70 82 chr4 60684368 60684698 -123603964 - MLT1I LTR MaLR -26 383 58 1092 236 61 30 chr4 60685693 60686209 -123602453 - MLT1E LTR MaLR -3 590 68 2107 201 5 110 chr4 60687715 60688332 -123600330 - MLT2B3 LTR ERVL 0 554 3 16565 48 3 1 chr4 60688354 60690520 -123598142 - L1P LINE L1 -3173 2973 802 17112 40 9 0 chr4 60690520 60693398 -123595264 + L1PA4 LINE L1 3267 6155 0 1984 139 3 3 chr4 60693408 60693709 -123594953 + AluSc SINE Alu 1 301 -8 203 171 0 0 chr4 60694809 60694850 -123593812 + A-rich Low_complexity Low_complexity 1 41 0 313 288 45 0 chr4 60694861 60694993 -123593669 - LTR16C LTR ERVL -30 461 324 259 212 0 136 chr4 60745631 60745716 -123542946 - MIR SINE MIR -69 193 127 1877 159 31 33 chr4 60745716 60746107 -123542555 + MLT1B LTR MaLR 1 390 0 259 212 0 136 chr4 60746107 60746139 -123542523 - MIR SINE MIR -135 127 92 494 257 75 53 chr4 60746178 60746365 -123542297 + MIR3 SINE MIR 13 203 -5 260 184 58 92 chr4 60746376 60746463 -123542199 + MIR SINE MIR 112 195 -67 5211 191 42 12 chr4 60746580 60746949 -123541713 + L1 LINE L1 2635 2991 -3155 1630 221 16 30 chr4 60746949 60747315 -123541347 - MLT1A1 LTR MaLR -2 363 3 5211 191 42 12 chr4 60747315 60748145 -123540517 + L1 LINE L1 2991 3870 -2276 419 0 0 19 chr4 60748382 60748434 -123540228 + (CA)n Simple_repeat Simple_repeat 2 52 0 570 281 79 108 chr4 60749486 60750183 -123538479 - HAL1b LINE L1 -836 512 61 376 363 48 8 chr4 60751514 60751638 -123537024 - L2 LINE L2 -16 3256 3128 22 0 0 0 chr4 60751798 60751820 -123536842 + AT_rich Low_complexity Low_complexity 1 22 0 195 387 101 0 chr4 60752226 60752345 -123536317 - MIR SINE MIR -80 182 52 383 243 105 40 chr4 60752499 60752651 -123536011 - MER5A DNA MER1_type -22 167 6 198 0 0 0 chr4 60755776 60755798 -123532864 + (T)n Simple_repeat Simple_repeat 1 22 0 183 255 39 0 chr4 60755844 60755895 -123532767 - MIR SINE MIR -113 149 97 502 261 68 0 chr4 60756709 60756870 -123531792 - MER58B DNA MER1_type 0 341 170 393 22 0 0 chr4 60757075 60757121 -123531541 + (TG)n Simple_repeat Simple_repeat 2 47 0 409 331 97 6 chr4 60757736 60757911 -123530751 + MIR SINE MIR 2 192 -70 2129 109 3 0 chr4 60758125 60758408 -123530254 + AluSx SINE Alu 3 286 -26 23 0 0 0 chr4 60758408 60758431 -123530231 + AT_rich Low_complexity Low_complexity 1 23 0 477 307 98 12 chr4 60758639 60758802 -123529860 + MIR3 SINE MIR 26 202 -6 565 272 52 85 chr4 60759240 60759604 -123529058 + MLT1E3 LTR MaLR 273 624 0 261 260 39 39 chr4 60759604 60759681 -123528981 - HAL1 LINE L1 -1651 856 780 956 227 42 63 chr4 60759794 60760129 -123528533 + L1M4c LINE L1 1332 1659 -4725 560 213 16 8 chr4 60760130 60760252 -123528410 + MER7A DNA MER2_type 1 121 -225 385 321 98 11 chr4 60760354 60760590 -123528072 + MLT1J1 LTR MaLR 148 409 -41 2242 27 0 0 chr4 60760707 60760968 -123527694 + L1PA3 LINE L1 5895 6155 0 2847 173 46 18 chr4 60761905 60762471 -123526191 - L1MC2 LINE L1 -32 6312 5731 576 260 107 44 chr4 60762314 60762738 -123525924 - L1MA2 LINE L1 -417 5887 5430 * 2751 162 31 31 chr4 60762920 60763409 -123525253 - MER54B LTR ERVL -114 679 191 7985 46 6 0 chr4 60763509 60765257 -123523405 + L1PA4 LINE L1 4402 6154 -1 1001 273 57 24 chr4 60765331 60765880 -123522782 - L1MC2 LINE L1 -1120 5026 4460 25144 78 7 6 chr4 60766037 60769483 -123519179 + L1P LINE L1 555 4005 -2141 423 232 120 24 chr4 60769587 60769712 -123518950 + L2 LINE L2 3171 3307 -6 1778 189 0 7 chr4 60769921 60770228 -123518434 + AluJb SINE Alu 1 305 -7 808 248 0 43 chr4 60770273 60770483 -123518179 + L1PB4 LINE L1 2 202 -6647 12086 194 34 43 chr4 60770485 60774845 -123513817 + L1PB4 LINE L1 2458 6859 0 51 65 0 0 chr4 60774848 60774941 -123513721 + AT_rich Low_complexity Low_complexity 1 93 0 183 216 54 0 chr4 60775104 60775141 -123513521 - MIR3 SINE MIR -27 181 143 1340 244 41 35 chr4 60775847 60776310 -123512352 + MLT1D LTR MaLR 31 496 -9 289 269 0 51 chr4 60778368 60778446 -123510216 - L2 LINE L2 -1 3312 3239 263 286 34 27 chr4 60778714 60778823 -123509839 + MIR SINE MIR 42 145 -63 418 211 35 26 chr4 60779178 60779292 -123509370 - L1MC1 LINE L1 -1 6332 6218 257 193 96 139 chr4 60779301 60779386 -123509276 - MER112 DNA MER1_type -78 182 95 273 57 0 0 chr4 60779386 60779421 -123509241 + (TG)n Simple_repeat Simple_repeat 1 35 0 257 193 96 139 chr4 60779421 60779522 -123509140 - MER112 DNA MER1_type -165 95 4 180 389 48 12 chr4 60779728 60779895 -123508767 - L2 LINE L2 -587 2727 2555 1736 149 98 20 chr4 60780087 60780435 -123508227 - THE1C LTR MaLR 0 375 1 28 0 0 0 chr4 60780513 60780541 -123508121 + AT_rich Low_complexity Low_complexity 1 28 0 270 359 14 35 chr4 60781199 60781343 -123507319 + MIR SINE MIR 20 158 -67 2128 122 0 3 chr4 60781607 60781911 -123506751 - AluSg SINE Alu -4 306 4 26 64 0 0 chr4 60783813 60783860 -123504802 + AT_rich Low_complexity Low_complexity 1 47 0 1269 258 43 6 chr4 60784700 60785022 -123503640 - MSTD LTR MaLR -62 334 1 180 323 46 0 chr4 60785022 60785087 -123503575 - MER5A DNA MER1_type -110 79 12 476 348 34 0 chr4 60787858 60788036 -123500626 - MIR SINE MIR -2 260 77 592 278 60 63 chr4 60788276 60788610 -123500052 - MLT1J1 LTR MaLR -21 425 93 33487 64 6 3 chr4 60788710 60793068 -123495594 - L1P LINE L1 -1768 4378 9 1762 223 46 16 chr4 60793109 60793715 -123494947 + L1ME2 LINE L1 5196 5818 -346 238 273 77 21 chr4 60793762 60793956 -123494706 + L1MC4 LINE L1 7693 7897 -145 314 301 0 0 chr4 60793962 60794055 -123494607 + L1MC4 LINE L1 6610 6702 -1340 308 253 48 82 chr4 60794042 60794188 -123494474 + L1MC4 LINE L1 7902 8042 0 * 943 238 25 52 chr4 60794202 60794552 -123494110 + L1ME2 LINE L1 5814 6155 -9 2033 134 3 7 chr4 60794667 60794972 -123493690 - AluSx SINE Alu -8 304 1 515 232 67 67 chr4 60795114 60795278 -123493384 + MER63B DNA MER1_type 7 170 -266 247 252 48 39 chr4 60796342 60796445 -123492217 + L1ME LINE L1 5642 5745 -376 327 281 11 0 chr4 60797082 60797171 -123491491 + CT-rich Low_complexity Low_complexity 3 92 0 214 310 114 74 chr4 60797195 60797630 -123491032 - L2 LINE L2 -50 3263 2716 374 237 122 8 chr4 60799971 60800102 -123488560 - MIR3 SINE MIR -27 181 36 455 154 0 0 chr4 60800292 60800370 -123488292 + L1PB3 LINE L1 6074 6151 -3 1620 201 0 10 chr4 60800431 60800729 -123487933 + AluJo SINE Alu 2 296 -16 37 23 0 0 chr4 60800954 60800998 -123487664 + AT_rich Low_complexity Low_complexity 1 44 0 276 233 58 0 chr4 60801012 60801098 -123487564 - MIR SINE MIR -36 226 136 1702 187 51 13 chr4 60801142 60801516 -123487146 - L1MB1 LINE L1 -6 6162 5775 292 197 51 26 chr4 60801527 60801644 -123487018 + (TTATA)n Simple_repeat Simple_repeat 5 124 0 2302 145 58 29 chr4 60801655 60802104 -123486558 - L1MB1 LINE L1 -367 5801 5340 389 267 17 0 chr4 60802104 60802220 -123486442 - L1 LINE L1 -3403 2743 2626 2724 296 109 46 chr4 60802321 60802792 -123485870 - L2 LINE L2 -173 3140 2700 2204 45 0 4 chr4 60802792 60803059 -123485603 + AluY SINE Alu 1 266 -45 2724 296 109 46 chr4 60803059 60804126 -123484536 - L2 LINE L2 -613 2700 1507 263 268 0 0 chr4 60804126 60804208 -123484454 - Charlie5 DNA MER1_type -27 2585 2504 437 208 151 0 chr4 60804211 60804317 -123484345 + FLAM_C SINE Alu 1 122 -21 1332 232 30 3 chr4 60804335 60804452 -123484210 + AluJo SINE Alu 5 117 -195 366 23 0 0 chr4 60804452 60804495 -123484167 + (TAA)n Simple_repeat Simple_repeat 2 44 0 1332 232 30 3 chr4 60804495 60804674 -123483988 + AluJo SINE Alu 117 309 -3 724 238 53 0 chr4 60804674 60804956 -123483706 - Charlie5 DNA MER1_type -73 2539 2243 634 173 16 8 chr4 60804962 60805089 -123483573 - Charlie5 DNA MER1_type -2484 128 1 373 285 81 8 chr4 60805100 60805223 -123483439 - L2 LINE L2 -1811 1503 1372 585 237 79 49 chr4 60805371 60805637 -123483025 - LTR33 LTR ERVL -233 288 15 270 231 46 0 chr4 60805666 60805731 -123482931 - L2 LINE L2 -1972 1342 1275 858 320 116 30 chr4 60805774 60806509 -123482153 - L2 LINE L2 -9 3304 2504 566 277 22 105 chr4 60806776 60807242 -123481420 - L2 LINE L2 -213 3059 2636 189 220 136 0 chr4 60807640 60807699 -123480963 - L2 LINE L2 -1972 1342 1276 22 0 0 0 chr4 60809692 60809714 -123478948 + AT_rich Low_complexity Low_complexity 1 22 0 200 257 27 81 chr4 60810200 60810274 -123478388 + L2 LINE L2 3229 3298 -15 292 217 120 22 chr4 60810347 60810439 -123478223 + L2 LINE L2 3168 3268 -4 985 311 91 37 chr4 60810584 60811000 -123477662 + L2 LINE L2 2452 2844 -469 637 188 8 23 chr4 60811000 60811128 -123477534 - FLAM_A SINE Alu -5 128 3 985 311 91 37 chr4 60811128 60811519 -123477143 + L2 LINE L2 2844 3313 0 342 0 0 0 chr4 60812070 60812108 -123476554 + (TG)n Simple_repeat Simple_repeat 2 39 0 201 121 0 0 chr4 60813411 60813444 -123475218 + (CA)n Simple_repeat Simple_repeat 1 33 0 237 329 101 0 chr4 60813566 60813645 -123475017 + L2 LINE L2 3154 3240 -32 189 387 0 0 chr4 60813648 60813723 -123474939 + L2 LINE L2 2903 2977 -295 21 0 0 0 chr4 60813820 60813841 -123474821 + AT_rich Low_complexity Low_complexity 1 21 0 1044 102 0 32 chr4 60815062 60815248 -123473414 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 405 109 0 0 chr4 60815248 60815312 -123473350 + (TC)n Simple_repeat Simple_repeat 2 65 0 1213 204 3 49 chr4 60815317 60815601 -123473061 - AluJo SINE Alu -41 271 1 230 397 16 33 chr4 60815773 60815894 -123472768 - MIR3 SINE MIR -87 121 3 1843 139 11 7 chr4 60817793 60818113 -123470549 + AluSx SINE Alu 1 321 0 242 324 19 9 chr4 60818925 60819033 -123469629 + MER103 DNA DNA 2 110 -56 725 255 143 21 chr4 60819251 60819606 -123469056 - MLT1E2 LTR MaLR -185 441 1 1866 164 3 0 chr4 60819629 60819915 -123468747 - AluSx SINE Alu -25 287 1 354 23 0 0 chr4 60820230 60820273 -123468389 + (CA)n Simple_repeat Simple_repeat 2 44 0 2090 134 7 0 chr4 60820454 60820752 -123467910 + AluSx SINE Alu 1 300 -12 24 0 0 0 chr4 60821675 60821699 -123466963 + AT_rich Low_complexity Low_complexity 1 24 0 749 296 86 47 chr4 60822622 60822960 -123465702 - MLT1J LTR MaLR -44 467 117 21 0 0 0 chr4 60823129 60823150 -123465512 + AT_rich Low_complexity Low_complexity 1 21 0 2239 118 0 3 chr4 60823202 60823506 -123465156 + AluSx SINE Alu 1 303 -9 666 330 26 0 chr4 60823704 60823937 -123464725 - MIR SINE MIR -23 239 1 212 324 83 28 chr4 60824032 60824140 -123464522 - MIR SINE MIR -70 138 25 411 300 17 0 chr4 60825835 60825955 -123462707 + LTR16A1 LTR ERVL 5 126 -331 317 294 119 38 chr4 60826177 60826412 -123462250 + HERV16 LTR ERVL 3506 3759 -1237 263 302 0 0 chr4 60826475 60826538 -123462124 + HERV16 LTR ERVL 4130 4192 -1462 1867 140 0 0 chr4 60826780 60827044 -123461618 - AluSx SINE Alu -46 266 3 414 328 61 82 chr4 60828648 60829124 -123459538 - MLT1K LTR MaLR 0 588 123 362 269 50 69 chr4 60829712 60829872 -123458790 + HERV16 LTR ERVL 4920 5076 -688 645 317 96 24 chr4 60830232 60830651 -123458011 + LTR16A1 LTR ERVL 9 457 0 1595 208 0 0 chr4 60831165 60831473 -123457189 - AluSx SINE Alu -2 310 3 2187 127 19 35 chr4 60832366 60832736 -123455926 + THE1B LTR MaLR 1 364 0 928 280 235 32 chr4 60832938 60833841 -123454821 + L2 LINE L2 2143 3243 -70 208 206 14 55 chr4 60833867 60833940 -123454722 + (TCTA)n Simple_repeat Simple_repeat 3 72 0 2127 129 73 42 chr4 60833945 60834355 -123454307 + MSTA LTR MaLR 6 428 0 734 271 23 18 chr4 60834531 60834752 -123453910 - MIR SINE MIR -27 235 14 639 258 48 0 chr4 60835164 60835331 -123453331 + MER5B DNA MER1_type 4 178 0 1062 166 16 5 chr4 60835339 60835526 -123453136 - MER5A DNA MER1_type 0 189 1 1462 259 67 13 chr4 60835718 60837033 -123451629 - L1 LINE L1 -3530 4035 2658 1242 137 0 0 chr4 60837049 60837224 -123451438 - AluSx SINE Alu -21 291 117 36 38 0 50 chr4 60837224 60837304 -123451358 + AT_rich Low_complexity Low_complexity 1 76 0 817 128 88 0 chr4 60837318 60837443 -123451219 - AluSx SINE Alu -177 136 1 2098 247 70 8 chr4 60837447 60838106 -123450556 - L1M3d LINE L1 -4516 2137 1438 301 306 32 70 chr4 60838230 60838416 -123450246 - L1M3d LINE L1 -5193 1460 1282 828 341 60 54 chr4 60838475 60839105 -123449557 - L1M3d LINE L1 -5225 1428 795 * 3632 162 5 11 chr4 60839081 60840108 -123448554 + L1MA3 LINE L1 4652 5674 -631 1499 110 0 39 chr4 60840107 60840362 -123448300 + L1MA3 LINE L1 5955 6199 -106 * 471 280 115 19 chr4 60841061 60841218 -123447444 - MER5B DNA MER1_type -2 176 5 195 42 0 0 chr4 60841245 60841269 -123447393 + (TA)n Simple_repeat Simple_repeat 1 24 0 285 98 0 0 chr4 60842013 60842054 -123446608 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 268 274 59 59 chr4 60843519 60843672 -123444990 + L2 LINE L2 3161 3313 0 310 246 0 14 chr4 60844616 60844685 -123443977 + L2 LINE L2 3246 3313 0 432 287 21 21 chr4 60846710 60846853 -123441809 + MIR3 SINE MIR 25 167 -41 26 82 0 0 chr4 60847468 60847529 -123441133 + AT_rich Low_complexity Low_complexity 1 61 0 258 262 47 37 chr4 60847930 60848037 -123440625 - MLT1K LTR MaLR 0 588 481 483 282 41 73 chr4 60848196 60848400 -123440262 + MER58C DNA MER1_type 1 199 -2221 372 59 0 0 chr4 60848400 60848451 -123440211 + L1PA3 LINE L1 6105 6155 0 483 282 41 73 chr4 60848451 60848466 -123440196 + MER58C DNA MER1_type 199 213 -2 347 341 92 18 chr4 60848497 60848661 -123440001 - MLT1K LTR MaLR -338 250 75 398 298 143 25 chr4 60849205 60849366 -123439296 - MER5A DNA MER1_type -1 188 9 1850 165 3 0 chr4 60849483 60849792 -123438870 + AluSx SINE Alu 1 310 -2 248 381 64 30 chr4 60850048 60850284 -123438378 - L2 LINE L2 -621 2693 2450 208 326 116 50 chr4 60850470 60850712 -123437950 - L2 LINE L2 -349 2965 2708 1657 228 11 3 chr4 60850929 60851285 -123437377 + MLT1A1 LTR MaLR 3 361 -4 2160 257 59 82 chr4 60851342 60852217 -123436445 - HAL1 LINE L1 -118 2389 1495 3752 149 96 27 chr4 60852217 60852990 -123435672 + LTR1B LTR ERV1 1 826 0 2160 257 59 82 chr4 60852990 60853581 -123435081 - HAL1 LINE L1 -1012 1495 957 1987 13 0 0 chr4 60853581 60853813 -123434849 - L1PA2 LINE L1 0 6155 5924 2160 257 59 82 chr4 60853813 60853876 -123434786 - HAL1 LINE L1 -1550 957 894 278 185 215 0 chr4 60853940 60854005 -123434657 + MLT1E1 LTR MaLR 31 109 -545 251 259 0 0 chr4 60854188 60854246 -123434416 + Tigger3(Golem) DNA MER2_type 2971 3028 -1 244 344 16 36 chr4 60854247 60854439 -123434223 + L1M4c LINE L1 1661 1848 -4536 21 95 0 0 chr4 60854439 60854502 -123434160 + AT_rich Low_complexity Low_complexity 1 63 0 741 281 48 63 chr4 60854733 60855241 -123433421 + L1M4c LINE L1 2042 2541 -4022 1662 165 17 0 chr4 60855241 60855532 -123433130 + AluJb SINE Alu 6 301 -11 741 281 48 63 chr4 60855532 60855611 -123433051 + L1M4c LINE L1 2541 2620 -3943 599 181 0 0 chr4 60855618 60855734 -123432928 + L1MA9 LINE L1 6197 6312 0 345 351 75 18 chr4 60855938 60856166 -123432496 - HAL1 LINE L1 -1891 616 376 305 326 37 21 chr4 60856284 60856471 -123432191 - HAL1 LINE L1 -2310 197 8 193 311 89 59 chr4 60856519 60856654 -123432008 + MIR SINE MIR 30 168 -94 1902 156 10 0 chr4 60856965 60857260 -123431402 + AluSx SINE Alu 1 298 -14 350 171 0 29 chr4 60857334 60857404 -123431258 + AluJ/FLAM SINE Alu 17 84 -218 255 212 24 12 chr4 60857491 60857576 -123431086 + L1MC4 LINE L1 6618 6703 -1339 246 253 46 0 chr4 60857596 60857683 -123430979 - L1MC4 LINE L1 -1337 6705 6615 237 229 22 15 chr4 60857671 60857761 -123430901 + L1MC4 LINE L1 2006 6983 -1339 * 238 239 0 11 chr4 60857745 60857838 -123430824 + L1MC4 LINE L1 2007 6981 -1341 227 302 23 0 chr4 60857763 60857849 -123430813 - L1MC4 LINE L1 -1341 6701 6614 * 23 0 0 0 chr4 60859036 60859059 -123429603 + AT_rich Low_complexity Low_complexity 1 23 0 21 82 0 0 chr4 60859176 60859225 -123429437 + AT_rich Low_complexity Low_complexity 1 49 0 229 377 9 44 chr4 60859317 60859431 -123429231 + MIR3 SINE MIR 6 115 -93 7196 74 9 2 chr4 60860221 60861196 -123427466 - L1P LINE L1 -4207 1939 958 25473 50 3 1 chr4 60861196 60865188 -123423474 + L1PA5 LINE L1 2149 6149 -5 803 263 20 43 chr4 60865161 60865462 -123423200 - L1M4 LINE L1 -2011 4135 3842 * 294 178 0 0 chr4 60865487 60865549 -123423113 - Alu SINE Alu -6 294 242 1814 199 14 8 chr4 60865586 60865942 -123422720 - MER65C LTR ERV1 -103 358 1 330 250 0 40 chr4 60865942 60866042 -123422620 + L1ME1 LINE L1 6039 6134 -32 256 143 0 0 chr4 60866079 60866121 -123422541 - L1ME LINE L1 -272 5894 5853 * 1020 276 63 14 chr4 60866119 60866546 -123422116 - L1M4 LINE L1 -1241 5716 5269 2098 271 109 24 chr4 60866642 60867117 -123421545 - L1M4b LINE L1 -3701 3262 2829 531 45 0 0 chr4 60867117 60867183 -123421479 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 2098 271 109 24 chr4 60867183 60867931 -123420731 - L1M4b LINE L1 -4134 2829 1966 36 0 0 0 chr4 60867995 60868031 -123420631 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr4 60868078 60868100 -123420562 + AT_rich Low_complexity Low_complexity 1 22 0 432 271 58 18 chr4 60868112 60868376 -123420286 - L1M4b LINE L1 -5103 1844 1441 430 294 4 39 chr4 60868390 60868621 -123420041 - L1ME LINE L1 -5284 786 564 556 250 0 15 chr4 60868840 60868976 -123419686 - LTR41 LTR ERVL -608 165 32 237 155 136 48 chr4 60869654 60869757 -123418905 + LTR41 LTR ERVL 642 753 -20 1780 102 7 21 chr4 60870341 60870626 -123418036 - L1PA3 LINE L1 0 6155 5875 356 328 92 0 chr4 60871197 60871328 -123417334 + MIR SINE MIR 29 171 -91 433 54 33 43 chr4 60871508 60871600 -123417062 + (TA)n Simple_repeat Simple_repeat 2 92 0 2361 185 68 37 chr4 60872353 60872840 -123415822 - L1MB7 LINE L1 -34 6150 5641 1850 154 20 23 chr4 60872840 60873184 -123415478 + MER2 DNA MER2_type 2 344 0 2361 185 68 37 chr4 60873184 60873268 -123415394 - L1MB7 LINE L1 -543 5641 5561 1090 227 49 8 chr4 60873400 60873851 -123414811 + MLT2B1 LTR ERVL 1 495 -25 709 173 8 8 chr4 60873835 60873962 -123414700 - MLT2B1 LTR ERVL -317 203 77 * 299 164 0 0 chr4 60873979 60874034 -123414628 + MLT2B1 LTR ERVL 464 518 -2 2167 173 111 28 chr4 60874440 60874898 -123413764 - MLT2B2 LTR ERVL 0 515 20 22 0 0 0 chr4 60875078 60875100 -123413562 + AT_rich Low_complexity Low_complexity 1 22 0 257 336 36 15 chr4 60875357 60875494 -123413168 + MIR SINE MIR 52 191 -71 27 0 0 0 chr4 60875675 60875702 -123412960 + AT_rich Low_complexity Low_complexity 1 27 0 876 325 90 8 chr4 60875848 60876075 -123412587 + MLT1I LTR MaLR 1 273 -136 720 183 35 104 chr4 60876075 60876305 -123412357 + MER20 DNA MER1_type 4 217 -2 876 325 90 8 chr4 60876305 60876455 -123412207 + MLT1I LTR MaLR 273 409 0 341 265 23 23 chr4 60877310 60877442 -123411220 + (CATATA)n Simple_repeat Simple_repeat 4 135 0 5505 150 44 6 chr4 60878005 60878782 -123409880 - L1PB1 LINE L1 -23 6128 5382 2046 135 0 10 chr4 60878782 60879086 -123409576 - AluSg SINE Alu -9 301 1 5505 150 44 6 chr4 60879086 60879840 -123408822 - L1PB1 LINE L1 -769 5382 4544 825 268 34 97 chr4 60880998 60881412 -123407250 + MLT1B LTR MaLR 1 388 -2 2744 29 0 0 chr4 60881470 60881781 -123406881 + AluYa5 SINE Alu 1 311 0 24 0 0 0 chr4 60882024 60882048 -123406614 + AT_rich Low_complexity Low_complexity 1 24 0 7156 48 7 0 chr4 60882162 60883797 -123404865 + L1PA5 LINE L1 4514 6154 0 22 0 0 0 chr4 60884473 60884495 -123404167 + AT_rich Low_complexity Low_complexity 1 22 0 545 264 188 15 chr4 60885026 60885223 -123403439 + MIR SINE MIR 9 239 -23 23 0 0 0 chr4 60885719 60885742 -123402920 + AT_rich Low_complexity Low_complexity 1 23 0 35 24 0 0 chr4 60886362 60886404 -123402258 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr4 60886422 60886446 -123402216 + AT_rich Low_complexity Low_complexity 1 24 0 22 80 0 0 chr4 60888740 60888790 -123399872 + AT_rich Low_complexity Low_complexity 1 50 0 256 335 49 49 chr4 60889829 60890032 -123398630 - L2 LINE L2 -534 2780 2578 2256 59 42 0 chr4 60891871 60892157 -123396505 - AluY SINE Alu -13 298 1 1900 233 48 48 chr4 60893918 60894458 -123394204 - MLT1E2 LTR MaLR -35 591 52 305 167 0 0 chr4 60896479 60896527 -123392135 - tRNA-Arg-CGC tRNA tRNA -28 48 1 509 316 13 6 chr4 60896572 60896730 -123391932 - MIR SINE MIR -23 239 81 291 54 0 0 chr4 60897026 60897090 -123391572 + (CA)n Simple_repeat Simple_repeat 1 101 0 291 54 0 0 chr4 60897090 60897127 -123391535 + (CA)n Simple_repeat Simple_repeat 2 38 0 1741 176 11 0 chr4 60897146 60897425 -123391237 - AluJo SINE Alu -30 282 1 1693 197 42 11 chr4 60897426 60897781 -123390881 + MLT2D LTR ERVL 1 366 -48 251 89 71 107 chr4 60897832 60897888 -123390774 + MLT2D LTR ERVL 462 515 0 728 294 114 30 chr4 60898076 60899654 -123389008 - L1ME3A LINE L1 -222 5948 4105 517 272 156 34 chr4 60899657 60899984 -123388678 + L2 LINE L2 2520 2886 -428 603 311 63 45 chr4 60900107 60900486 -123388176 + LTR16C LTR ERVL 97 482 -9 552 287 66 92 chr4 60900495 60900951 -123387711 + L2 LINE L2 2869 3312 -1 5454 134 30 17 chr4 60901054 60901215 -123387447 + L1PA16 LINE L1 5105 5262 -904 2297 108 37 6 chr4 60901215 60901568 -123387094 + THE1B LTR MaLR 1 364 0 5454 134 30 17 chr4 60901568 60902463 -123386199 + L1PA16 LINE L1 5262 6157 -9 1295 192 13 76 chr4 60902493 60902810 -123385852 + AluJo SINE Alu 1 297 -15 404 264 79 7 chr4 60903022 60903162 -123385500 - L1ME3A LINE L1 -2993 3153 3004 336 301 12 6 chr4 60903549 60903715 -123384947 - L1ME3A LINE L1 -3170 2976 2810 240 86 0 0 chr4 60903761 60903796 -123384866 + (TG)n Simple_repeat Simple_repeat 2 36 0 1106 251 96 27 chr4 60903799 60904205 -123384457 - MLT2B1 LTR ERVL -86 434 1 246 307 105 0 chr4 60904228 60904342 -123384320 - L1ME3A LINE L1 -3362 2784 2659 213 39 0 0 chr4 60904343 60904369 -123384293 + (TG)n Simple_repeat Simple_repeat 2 27 0 490 261 70 74 chr4 60907327 60907751 -123380911 + MLT1E1 LTR MaLR 1 389 -204 2043 28 0 4 chr4 60907753 60908001 -123380661 - L1PA4 LINE L1 -3 6152 5906 1840 26 0 39 chr4 60908001 60908233 -123380429 + L1PA4 LINE L1 5674 5896 -259 741 240 44 0 chr4 60908233 60908415 -123380247 + MLT1E1 LTR MaLR 386 636 -18 1094 185 29 33 chr4 60908415 60908495 -123380167 + MLT1A1 LTR MaLR 1 80 -285 1604 210 3 0 chr4 60908495 60908805 -123379857 + AluJb SINE Alu 1 311 -1 1094 185 29 33 chr4 60908805 60908967 -123379695 + MLT1A1 LTR MaLR 80 242 -123 277 139 0 0 chr4 60908982 60909025 -123379637 - MLT1A2 LTR MaLR -34 340 298 266 119 0 24 chr4 60909129 60909171 -123379491 + MLT1A1 LTR MaLR 320 360 -5 3676 227 81 68 chr4 60909179 60910528 -123378134 + MLT1A1-int LTR MaLR 5 1370 -1 1673 231 14 8 chr4 60910529 60910892 -123377770 + MLT1A1 LTR MaLR 1 365 0 593 371 130 8 chr4 60912720 60913205 -123375457 + L3 LINE CR1 705 1248 -329 296 314 90 49 chr4 60913237 60913460 -123375202 + MIR SINE MIR 31 262 0 303 348 73 54 chr4 60913487 60913682 -123374980 + L3 LINE CR1 1254 1459 -118 1441 164 37 17 chr4 60913682 60913981 -123374681 - L1MA8 LINE L1 -3 6288 5984 303 348 73 54 chr4 60913981 60914101 -123374561 + L3 LINE CR1 1459 1575 -2 2199 98 7 0 chr4 60914704 60914989 -123373673 - AluSx SINE Alu -18 294 8 1062 263 29 11 chr4 60916786 60917067 -123371595 + MLT1H LTR MaLR 18 303 -246 195 100 0 0 chr4 60917162 60917192 -123371470 + (CAGCT)n Simple_repeat Simple_repeat 1 30 0 432 123 111 0 chr4 60917193 60917274 -123371388 + MLT1H LTR MaLR 458 547 -2 22 0 0 0 chr4 60917971 60917993 -123370669 + AT_rich Low_complexity Low_complexity 1 22 0 2293 104 0 0 chr4 60919741 60920039 -123368623 + AluSq SINE Alu 1 298 -15 223 155 0 35 chr4 60920483 60920541 -123368121 + (TAA)n Simple_repeat Simple_repeat 3 58 0 1833 98 7 22 chr4 60921547 60921822 -123366840 + AluSg SINE Alu 36 306 -4 24 32 0 0 chr4 60922076 60922107 -123366555 + AT_rich Low_complexity Low_complexity 1 31 0 248 277 31 0 chr4 60923154 60923219 -123365443 + Charlie8 DNA MER1_type 2348 2414 -3 1484 207 7 30 chr4 60925227 60925526 -123363136 + AluJo SINE Alu 5 296 -16 1627 181 31 3 chr4 60926357 60926650 -123362012 - AluJb SINE Alu -11 301 1 21 57 0 0 chr4 60926808 60926843 -123361819 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr4 60926903 60926935 -123361727 + AT_rich Low_complexity Low_complexity 1 32 0 30 27 0 0 chr4 60927264 60927301 -123361361 + AT_rich Low_complexity Low_complexity 1 37 0 1432 189 0 45 chr4 60927505 60927817 -123360845 - AluJo SINE Alu -14 298 1 1129 301 98 34 chr4 60928094 60928627 -123360035 + MLT1G1 LTR MaLR 1 572 -23 2312 192 70 19 chr4 60928627 60929154 -123359508 - MER74A LTR ERVL 0 558 5 1129 301 98 34 chr4 60929154 60929172 -123359490 + MLT1G1 LTR MaLR 572 587 -8 216 170 0 0 chr4 60929176 60929229 -123359433 + (TA)n Simple_repeat Simple_repeat 1 53 0 645 296 30 8 chr4 60929381 60929648 -123359014 + MLT1G1-int LTR MaLR 306 578 -793 277 278 72 21 chr4 60930855 60930952 -123357710 - MIR SINE MIR -155 107 6 563 285 149 5 chr4 60930963 60931177 -123357485 - MIR SINE MIR -13 249 5 21 36 0 0 chr4 60931720 60931748 -123356914 + AT_rich Low_complexity Low_complexity 1 28 0 237 134 30 15 chr4 60931898 60931965 -123356697 + (TA)n Simple_repeat Simple_repeat 1 68 0 729 281 38 14 chr4 60932010 60932220 -123356442 - MIR SINE MIR -36 226 12 507 138 0 0 chr4 60933177 60933257 -123355405 + MADE1 DNA Mariner 1 80 0 3263 137 22 8 chr4 60933742 60934232 -123354430 + MER1A DNA MER1_type 33 529 0 8676 34 23 1 chr4 60936174 60937246 -123351416 - L1PA4 LINE L1 -1621 4525 3430 7540 34 0 0 chr4 60937243 60938874 -123349788 + L1PA4 LINE L1 4525 6155 0 273 357 16 0 chr4 60939105 60939231 -123349431 + L2 LINE L2 2140 2267 -1047 195 236 68 74 chr4 60939212 60939360 -123349302 + L2 LINE L2 3073 3219 -94 * 736 346 84 37 chr4 60939573 60940248 -123348414 + L2 LINE L2 2488 3205 -108 1201 126 0 0 chr4 60940248 60940415 -123348247 - AluSp SINE Alu -15 298 132 308 287 56 21 chr4 60940660 60940803 -123347859 - MLT1K LTR MaLR -1 587 440 266 373 71 6 chr4 60940876 60941045 -123347617 - MLT1K LTR MaLR -262 326 147 1575 198 7 0 chr4 60942926 60943229 -123345433 - AluJo SINE Alu -5 307 3 30 83 0 0 chr4 60943687 60943759 -123344903 + AT_rich Low_complexity Low_complexity 1 72 0 2135 171 19 64 chr4 60945422 60945665 -123342997 + L1PB4 LINE L1 5697 5909 -247 1819 161 4 0 chr4 60945665 60945945 -123342717 + AluSx SINE Alu 3 283 -29 2135 171 19 64 chr4 60945945 60946182 -123342480 + L1PB4 LINE L1 5909 6155 -1 496 301 45 20 chr4 60946346 60946569 -123342093 + MIR SINE MIR 7 235 -27 955 177 122 27 chr4 60946634 60946879 -123341783 - MSTA LTR MaLR 0 428 166 292 319 89 51 chr4 60946973 60947208 -123341454 - MLT1J LTR MaLR -242 269 26 315 269 0 0 chr4 60947277 60947344 -123341318 + MIR SINE MIR 67 133 -129 294 343 215 4 chr4 60947428 60947693 -123340969 - L2 LINE L2 -554 2760 2440 200 288 0 76 chr4 60947750 60947816 -123340846 + L2 LINE L2 3194 3254 -18 29 28 0 0 chr4 60947904 60947940 -123340722 + AT_rich Low_complexity Low_complexity 1 36 0 35 41 0 0 chr4 60948810 60948859 -123339803 + AT_rich Low_complexity Low_complexity 1 49 0 312 27 0 0 chr4 60950071 60950108 -123338554 + (TG)n Simple_repeat Simple_repeat 2 38 0 26 0 0 0 chr4 60951524 60951550 -123337112 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr4 60952097 60952119 -123336543 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr4 60954935 60954974 -123333688 + AT_rich Low_complexity Low_complexity 1 39 0 6210 147 70 14 chr4 60955125 60956000 -123332662 - Tigger3b DNA MER2_type -1797 1231 273 1480 194 23 23 chr4 60956000 60956299 -123332363 + AluJo SINE Alu 1 299 -13 6210 147 70 14 chr4 60956299 60956589 -123332073 - Tigger3b DNA MER2_type -2755 273 1 1906 146 21 0 chr4 60956884 60957010 -123331652 + AluSx SINE Alu 1 123 -189 519 31 0 0 chr4 60957010 60957075 -123331587 + (CA)n Simple_repeat Simple_repeat 2 66 0 1906 146 21 0 chr4 60957075 60957236 -123331426 + AluSx SINE Alu 123 294 -18 1159 224 99 10 chr4 60957261 60957574 -123331088 + L1MA9 LINE L1 5934 6274 -38 225 342 72 0 chr4 60958020 60958131 -123330531 - LTR33A LTR ERVL -345 178 60 207 167 0 0 chr4 60958136 60958172 -123330490 + A-rich Low_complexity Low_complexity 6 41 0 1882 197 67 71 chr4 60958217 60958404 -123330258 - MLT1D LTR MaLR 0 505 319 1367 206 129 6 chr4 60958404 60958729 -123329933 + MLT1A1 LTR MaLR 1 365 0 1882 197 67 71 chr4 60958729 60959048 -123329614 - MLT1D LTR MaLR -186 319 1 2431 185 80 13 chr4 60960054 60960589 -123328073 + L1MC2 LINE L1 5702 6272 -72 329 287 169 69 chr4 60963668 60964073 -123324589 - L1MC4a LINE L1 -135 5986 5538 180 0 0 0 chr4 60964458 60964478 -123324184 + (TTG)n Simple_repeat Simple_repeat 2 21 0 23 0 0 0 chr4 60964916 60964939 -123323723 + AT_rich Low_complexity Low_complexity 1 23 0 1885 211 40 80 chr4 60965418 60965995 -123322667 - MLT2B3 LTR ERVL 0 554 1 569 276 198 10 chr4 60966058 60966250 -123322412 - MIR SINE MIR -32 230 3 457 269 90 0 chr4 60966357 60966513 -123322149 - MIR SINE MIR -5 257 88 306 89 0 0 chr4 60968060 60968105 -123320557 - MADE1 DNA Mariner -35 45 1 180 0 0 0 chr4 60968498 60968518 -123320144 + (TG)n Simple_repeat Simple_repeat 2 21 0 1880 137 92 3 chr4 60969292 60969650 -123319012 - MLT1B LTR MaLR 0 390 1 202 337 163 28 chr4 60970431 60970829 -123317833 + L2 LINE L2 2274 2725 -589 278 388 30 42 chr4 60971304 60971639 -123317023 + L2 LINE L2 2455 2785 -529 741 12 0 0 chr4 60972187 60972271 -123316391 - L1PA5 LINE L1 -312 5842 5759 2212 61 17 10 chr4 60972271 60972567 -123316095 + L1PA5 LINE L1 5855 6153 -1 21 71 0 0 chr4 60972645 60972687 -123315975 + AT_rich Low_complexity Low_complexity 1 42 0 2069 134 7 0 chr4 60973313 60973639 -123315023 + AluSx SINE Alu 1 312 0 34 0 0 0 chr4 60973752 60973786 -123314876 + AT_rich Low_complexity Low_complexity 1 34 0 258 300 18 18 chr4 60975355 60975465 -123313197 - Charlie8 DNA MER1_type -2174 243 134 330 111 0 0 chr4 60975653 60975698 -123312964 - L1PA10 LINE L1 -42 6126 6082 986 203 26 0 chr4 60979705 60979897 -123308765 - L1MB7 LINE L1 -170 6014 5818 2617 203 28 11 chr4 60980125 60980517 -123308145 - L1MB7 LINE L1 -356 5828 5422 490 114 13 0 chr4 60980517 60980596 -123308066 - MADE1 DNA Mariner 0 80 1 2617 203 28 11 chr4 60980596 60980836 -123307826 - L1MB7 LINE L1 -762 5422 5188 1857 227 24 55 chr4 60981072 60981711 -123306951 - L1MB7 LINE L1 -972 5174 4556 1072 204 75 34 chr4 60981716 60981981 -123306681 - MLT1C LTR MaLR 0 467 192 5607 113 33 0 chr4 60982008 60983006 -123305656 - L1PA13 LINE L1 0 6163 5151 2843 163 16 14 chr4 60983020 60983571 -123305091 + L1PA13 LINE L1 4607 5158 -988 1927 127 0 7 chr4 60983598 60983874 -123304788 + AluSx SINE Alu 6 279 -33 186 43 0 0 chr4 60983874 60983897 -123304765 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 734 179 68 31 chr4 60983904 60984066 -123304596 - MLT1C LTR MaLR -299 168 1 327 233 10 1 chr4 60984067 60984174 -123304488 - L1MB7 LINE L1 -1592 4554 4448 301 222 0 81 chr4 60984240 60984339 -123304323 + L1MC4 LINE L1 6613 6703 -1339 522 154 6 31 chr4 60984358 60984688 -123303974 + (TA)n Simple_repeat Simple_repeat 1 321 0 2204 225 23 12 chr4 60984866 60985435 -123303227 - L1MB7 LINE L1 -1696 4450 3876 188 65 0 32 chr4 60986263 60986294 -123302368 + (TAAAAA)n Simple_repeat Simple_repeat 2 31 0 362 365 140 19 chr4 60986294 60986938 -123301724 + L2 LINE L2 1853 2574 -740 267 54 0 0 chr4 60988599 60988636 -123300026 + (TTAA)n Simple_repeat Simple_repeat 2 38 0 1822 48 17 0 chr4 60988648 60988878 -123299784 - AluY SINE Alu -77 234 1 30 27 0 0 chr4 60989870 60989907 -123298755 + AT_rich Low_complexity Low_complexity 1 37 0 27 81 0 0 chr4 60989920 60989982 -123298680 + AT_rich Low_complexity Low_complexity 1 62 0 855 341 120 10 chr4 60990911 60991403 -123297259 + L2 LINE L2 2359 2904 -410 248 225 42 14 chr4 60991432 60991503 -123297159 + L2 LINE L2 3020 3092 -221 1230 237 189 12 chr4 60991633 60992239 -123296423 + LTR50 LTR ERVL 44 793 -2 258 164 0 0 chr4 60994495 60994550 -123294112 + GA-rich Low_complexity Low_complexity 2 56 0 739 241 40 9 chr4 60996569 60996793 -123291869 - L1ME2 LINE L1 -294 5939 5709 1602 269 86 13 chr4 60996902 60997611 -123291051 - L1ME2 LINE L1 -981 5234 4474 291 273 152 15 chr4 60997629 60997761 -123290901 - L1ME2 LINE L1 -6210 186 37 386 322 69 69 chr4 60997761 60998258 -123290404 + L2 LINE L2 2685 3185 -128 894 311 48 46 chr4 60998327 60998610 -123290052 + LTR16C LTR ERVL 76 362 -129 2238 109 0 0 chr4 60998610 60998904 -123289758 - AluSc SINE Alu -15 294 1 894 311 48 46 chr4 60998904 60999035 -123289627 + LTR16C LTR ERVL 362 491 0 27 49 0 0 chr4 60999580 60999621 -123289041 + AT_rich Low_complexity Low_complexity 1 41 0 347 320 46 58 chr4 60999976 61000318 -123288344 + MLT1I LTR MaLR 67 405 -4 239 353 82 0 chr4 61000971 61001056 -123287606 + L2 LINE L2 3008 3099 -173 1133 312 254 16 chr4 61002878 61003975 -123284687 - L2 LINE L2 -16 3297 1920 184 328 181 0 chr4 61003984 61004100 -123284562 - L2 LINE L2 -1558 1756 1620 21 0 0 0 chr4 61004375 61004396 -123284266 + AT_rich Low_complexity Low_complexity 1 21 0 204 125 0 0 chr4 61004694 61004726 -123283936 + (CA)n Simple_repeat Simple_repeat 1 32 0 196 298 35 53 chr4 61004925 61005039 -123283623 - MIR SINE MIR -102 160 49 197 304 36 0 chr4 61005293 61005349 -123283313 + MIR SINE MIR 45 102 -160 11767 100 9 5 chr4 61005889 61008376 -123280286 - L1PA7 LINE L1 -13 6141 3648 2431 257 51 23 chr4 61008511 61009607 -123279055 - L1ME1 LINE L1 -6 6160 5031 528 210 28 21 chr4 61009621 61009764 -123278898 - L1MC5 LINE L1 -27 7934 7791 1731 257 82 5 chr4 61009791 61010363 -123278299 - L1ME3A LINE L1 -1 6169 5554 275 232 171 12 chr4 61011503 61011585 -123277077 + MLT1J1 LTR MaLR 38 132 -314 286 359 143 18 chr4 61011915 61012299 -123276363 - L2 LINE L2 -487 2827 2396 532 307 12 12 chr4 61012335 61012501 -123276161 - MIR SINE MIR -34 228 63 34 24 0 0 chr4 61012818 61012859 -123275803 + AT_rich Low_complexity Low_complexity 1 41 0 1927 143 3 10 chr4 61012880 61013187 -123275475 + AluSx SINE Alu 1 305 -7 181 342 44 9 chr4 61013197 61013311 -123275351 - L2 LINE L2 -1277 2037 1920 338 178 11 0 chr4 61014228 61014318 -123274344 + (TA)n Simple_repeat Simple_repeat 1 91 0 209 356 78 27 chr4 61014833 61015052 -123273610 - L2 LINE L2 -665 2649 2420 1558 244 20 28 chr4 61015994 61016384 -123272278 - MER82 DNA MER2_type -22 631 245 1933 136 7 3 chr4 61016593 61016894 -123271768 - AluSx SINE Alu -5 307 6 1997 131 0 7 chr4 61017025 61017336 -123271326 + AluSc SINE Alu 2 309 0 27 0 0 0 chr4 61017810 61017837 -123270825 + AT_rich Low_complexity Low_complexity 1 27 0 342 0 0 0 chr4 61018501 61018539 -123270123 + (TG)n Simple_repeat Simple_repeat 2 39 0 338 281 34 0 chr4 61020697 61020786 -123267876 + MER58 DNA MER1_type 3 94 -121 285 185 0 77 chr4 61020810 61020875 -123267787 + MER58 DNA MER1_type 2358 2417 -3 805 323 50 20 chr4 61020914 61021314 -123267348 - L2 LINE L2 -16 3297 2886 709 269 14 14 chr4 61021796 61022004 -123266658 - MER3 DNA MER1_type 0 209 2 248 0 31 0 chr4 61022100 61022132 -123266530 + (TA)n Simple_repeat Simple_repeat 2 34 0 41808 39 22 1 chr4 61022375 61028388 -123260274 + L1PA3 LINE L1 14 6155 0 189 0 0 0 chr4 61030814 61030835 -123257827 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 308 331 129 67 chr4 61032497 61032868 -123255794 - L2 LINE L2 -21 3292 2899 444 310 131 22 chr4 61032986 61033215 -123255447 - MIR SINE MIR 0 262 9 450 190 140 0 chr4 61033378 61033478 -123255184 + MER94 DNA DNA 12 125 -9 424 267 33 33 chr4 61033559 61033709 -123254953 - MIR3 SINE MIR -11 197 48 1507 213 22 14 chr4 61033709 61034070 -123254592 - MLT1A1 LTR MaLR -1 364 1 1403 174 10 52 chr4 61034180 61034490 -123254172 - AluJb SINE Alu -15 297 1 183 331 188 0 chr4 61035247 61035380 -123253282 + MIR SINE MIR 32 189 -73 2209 91 25 31 chr4 61035399 61035717 -123252945 - MER1A DNA MER1_type 0 529 214 26 50 0 0 chr4 61037456 61037496 -123251166 + AT_rich Low_complexity Low_complexity 1 40 0 2092 160 43 31 chr4 61037743 61038279 -123250383 - MLT2A2 LTR ERVL -8 546 1 180 351 68 0 chr4 61038279 61038353 -123250309 - L2 LINE L2 -23 3249 3171 234 245 0 0 chr4 61038372 61038425 -123250237 + MIR SINE MIR 100 152 -110 1374 161 112 15 chr4 61038983 61039250 -123249412 + AluJo SINE Alu 1 293 -19 2327 77 0 7 chr4 61039256 61039554 -123249108 + AluSc SINE Alu 4 299 -10 241 361 72 0 chr4 61039998 61040095 -123248567 + L2 LINE L2 3134 3237 -35 752 293 81 15 chr4 61040102 61040460 -123248202 + L2 LINE L2 2757 3134 -179 817 304 85 75 chr4 61040460 61041378 -123247284 - L2 LINE L2 -1 3312 2377 490 310 29 6 chr4 61041402 61041573 -123247089 + MLT1I LTR MaLR 10 184 -225 1571 261 98 4 chr4 61041820 61042302 -123246360 - L2 LINE L2 -938 2376 1850 344 326 15 0 chr4 61042724 61042859 -123245803 - MER117 DNA MER1_type -50 147 11 237 353 53 7 chr4 61042859 61043009 -123245653 - L2 LINE L2 -23 3290 3134 1033 278 60 19 chr4 61043038 61043408 -123245254 - MLT1J1 LTR MaLR 0 446 62 797 282 102 48 chr4 61043506 61043999 -123244663 - L2 LINE L2 -274 3039 2514 424 291 89 0 chr4 61044311 61044469 -123244193 - L2 LINE L2 -778 2536 2365 897 171 76 171 chr4 61045264 61045478 -123243184 - L1ME2 LINE L1 -167 5997 5764 265 47 47 0 chr4 61045478 61045521 -123243141 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 897 171 76 171 chr4 61045521 61045733 -123242929 - L1ME2 LINE L1 -400 5764 5620 1864 178 0 0 chr4 61045733 61046037 -123242625 - AluSx SINE Alu -6 306 3 897 171 76 171 chr4 61046037 61046095 -123242567 - L1ME2 LINE L1 -544 5620 5558 1844 190 64 3 chr4 61047084 61047457 -123241205 + MSTD LTR MaLR 1 396 0 23 33 0 0 chr4 61047630 61047660 -123241002 + AT_rich Low_complexity Low_complexity 1 30 0 232 135 19 0 chr4 61047953 61048005 -123240657 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 1787 174 34 26 chr4 61049086 61049437 -123239225 - MLT1A1 LTR MaLR -6 359 6 837 271 12 36 chr4 61049573 61049820 -123238842 + MIR SINE MIR 8 248 -14 23 33 0 0 chr4 61051306 61051336 -123237326 + AT_rich Low_complexity Low_complexity 1 30 0 1451 153 68 0 chr4 61051364 61051599 -123237063 + AluJo SINE Alu 1 251 -61 558 293 91 57 chr4 61101618 61102818 -123185844 - L1MDa LINE L1 -2964 3576 2345 1744 210 58 18 chr4 61103343 61103784 -123184878 + MLT1D LTR MaLR 12 624 -2 1844 106 6 26 chr4 61103844 61104155 -123184507 - L1PA13 LINE L1 -4 6159 5855 26 64 0 0 chr4 61105257 61105304 -123183358 + AT_rich Low_complexity Low_complexity 1 47 0 2691 10 0 0 chr4 61105442 61105740 -123182922 - AluYa5 SINE Alu -13 298 1 2176 97 10 0 chr4 61107583 61107873 -123180789 + AluSc SINE Alu 13 305 -4 872 205 12 12 chr4 61108124 61108295 -123180367 - FAM SINE Alu 0 175 5 1885 133 85 20 chr4 61108541 61108893 -123179769 + THE1C LTR MaLR 1 375 0 1157 245 91 63 chr4 61108928 61109519 -123179143 - LTR1B LTR ERV1 0 826 219 2112 200 35 24 chr4 61111064 61111523 -123177139 - MLT2C2 LTR ERVL 0 464 1 22 35 0 0 chr4 61111626 61111655 -123177007 + AT_rich Low_complexity Low_complexity 1 29 0 1806 156 3 3 chr4 61111667 61111949 -123176713 + AluSx SINE Alu 1 282 -30 249 57 0 0 chr4 61111959 61111994 -123176668 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 1513 200 0 42 chr4 61113092 61113402 -123175260 - AluJo SINE Alu -11 301 5 21 57 0 0 chr4 61114021 61114056 -123174606 + AT_rich Low_complexity Low_complexity 1 35 0 245 369 77 10 chr4 61114536 61114731 -123173931 - L2 LINE L2 -219 3053 2846 387 206 54 43 chr4 61115497 61115589 -123173073 + MLT1E LTR MaLR 72 164 -429 1901 122 22 26 chr4 61115629 61115940 -123172722 - AluSx SINE Alu -2 310 1 449 292 39 8 chr4 61115955 61116085 -123172577 + MLT1E LTR MaLR 119 252 -341 2527 276 17 26 chr4 61116133 61116902 -123171760 + L1M3b LINE L1 2 763 -5518 26 74 0 0 chr4 61117122 61117176 -123171486 + AT_rich Low_complexity Low_complexity 1 54 0 22 56 0 0 chr4 61117193 61117229 -123171433 + AT_rich Low_complexity Low_complexity 1 36 0 216 0 0 0 chr4 61118109 61118133 -123170529 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 204 352 68 0 chr4 61118321 61118409 -123170253 + L3b LINE CR1 1320 1413 -170 22 0 0 0 chr4 61118564 61118586 -123170076 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr4 61119414 61119445 -123169217 + AT_rich Low_complexity Low_complexity 1 31 0 321 282 89 40 chr4 61119506 61119678 -123168984 + L1MCa LINE L1 1706 1891 -4535 633 27 0 0 chr4 61119678 61119753 -123168909 + (GAGAA)n Simple_repeat Simple_repeat 2 76 0 321 282 89 40 chr4 61119753 61119782 -123168880 + L1MCa LINE L1 1891 1917 -4509 225 154 0 0 chr4 61119786 61119825 -123168837 + GA-rich Low_complexity Low_complexity 4 42 0 21 0 0 0 chr4 61119891 61119912 -123168750 + AT_rich Low_complexity Low_complexity 1 21 0 483 248 166 19 chr4 61120004 61120161 -123168501 - MER5A DNA MER1_type -1 188 9 560 298 169 21 chr4 61120227 61121092 -123167570 + L1MCa LINE L1 2244 3199 -3227 480 275 93 56 chr4 61121186 61121862 -123166800 + L1MCa LINE L1 3414 4114 -2312 488 291 161 0 chr4 61121863 61122062 -123166600 + L1MCa LINE L1 4361 4591 -1835 23 33 0 0 chr4 61122104 61122134 -123166528 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr4 61123093 61123116 -123165546 + AT_rich Low_complexity Low_complexity 1 23 0 2124 79 14 3 chr4 61123894 61124184 -123164478 - AluY SINE Alu -18 293 1 1218 212 47 47 chr4 61124554 61124917 -123163745 - MLT1A1 LTR MaLR -2 363 1 1678 221 11 37 chr4 61125947 61126064 -123162598 + MLT1A1 LTR MaLR 1 120 -245 3174 115 4 0 chr4 61126064 61126515 -123162147 - MLT2A2 LTR ERVL 0 453 1 1678 221 11 37 chr4 61126515 61126772 -123161890 + MLT1A1 LTR MaLR 120 365 0 27 29 0 0 chr4 61127878 61127912 -123160750 + AT_rich Low_complexity Low_complexity 1 34 0 5780 88 3 0 chr4 61128793 61129577 -123159085 + L1PA7 LINE L1 5364 6149 -5 242 315 9 0 chr4 61129853 61129964 -123158698 + L1P LINE L1 3687 3798 -2348 22 0 0 0 chr4 61132151 61132173 -123156489 + AT_rich Low_complexity Low_complexity 1 22 0 334 368 82 0 chr4 61133153 61133335 -123155327 + MIR SINE MIR 58 254 -8 2359 206 87 2 chr4 61134791 61135306 -123153356 + MER89 LTR ERV1 1 559 0 226 405 35 17 chr4 61135354 61135470 -123153192 - L2 LINE L2 -31 3282 3165 198 0 0 0 chr4 61136613 61136636 -123152026 + (TA)n Simple_repeat Simple_repeat 1 45 0 198 0 0 0 chr4 61136636 61136658 -123152004 + (TA)n Simple_repeat Simple_repeat 2 23 0 315 23 0 0 chr4 61137315 61137358 -123151304 - L1PA4 LINE L1 0 6155 6113 1403 213 0 0 chr4 61137786 61138072 -123150590 + L1P LINE L1 3879 4164 -1982 322 301 19 10 chr4 61138074 61138177 -123150485 + L1M4 LINE L1 2443 2546 -3600 886 315 101 16 chr4 61138230 61138836 -123149826 + L1M4 LINE L1 2626 3282 -2864 26 0 0 0 chr4 61138850 61138876 -123149786 + AT_rich Low_complexity Low_complexity 1 26 0 626 236 8 0 chr4 61139052 61139179 -123149483 + MLT1A1 LTR MaLR 1 128 -237 424 240 115 91 chr4 61139180 61139388 -123149274 - MLT1F1 LTR MaLR -292 275 63 25 90 0 0 chr4 61139563 61139630 -123149032 + AT_rich Low_complexity Low_complexity 1 67 0 2469 121 3 3 chr4 61141184 61141548 -123147114 + THE1B LTR MaLR 1 364 0 273 29 0 0 chr4 61141559 61141593 -123147069 + (AATTG)n Simple_repeat Simple_repeat 5 38 0 618 281 101 52 chr4 61142848 61143215 -123145447 + MLT1B LTR MaLR 6 390 0 305 213 0 0 chr4 61143215 61143276 -123145386 + MLT1B-int LTR MaLR 1 61 -1310 2095 125 3 0 chr4 61143324 61143613 -123145049 + AluSg SINE Alu 1 290 -20 2768 247 34 20 chr4 61143626 61144416 -123144246 + MLT1B-int LTR MaLR 71 871 -500 286 274 12 0 chr4 61144426 61144510 -123144152 + MLT1E LTR MaLR 509 593 0 1454 348 6 4 chr4 61144678 61145186 -123143476 + L1PA4 LINE L1 1 509 -6278 7205 131 45 9 chr4 61145197 61146346 -123142316 + L1PA4 LINE L1 1471 2577 -4229 7205 47 1 1 chr4 61146346 61147325 -123141337 + L1PA4 LINE L1 5825 6803 -3 7205 131 45 9 chr4 61147325 61148831 -123139831 + L1PA4 LINE L1 2577 4027 -2779 7208 47 2 0 chr4 61148831 61149975 -123138687 - L1PA4 LINE L1 -3 6152 5007 7205 131 45 9 chr4 61149975 61151158 -123137504 + L1PA4 LINE L1 4027 6803 -3 7571 206 17 13 chr4 61151185 61153827 -123134835 + L1PA16 LINE L1 3505 6156 -10 * 9422 111 6 1 chr4 61153824 61155243 -123133419 + L1P LINE L1 3038 4463 -1683 563 126 48 0 chr4 61155255 61155358 -123133304 + L1PA7 LINE L1 3230 3337 -2809 6690 73 11 1 chr4 61155369 61157032 -123131630 + L1PA7 LINE L1 4481 6152 -2 512 214 98 9 chr4 61157289 61157401 -123131261 - MER58 DNA MER1_type -59 282 44 22 0 0 0 chr4 61158185 61158207 -123130455 + AT_rich Low_complexity Low_complexity 1 22 0 363 288 147 16 chr4 61158450 61158634 -123130028 + MIR SINE MIR 55 262 0 253 23 0 68 chr4 61158657 61158701 -123129961 + (TCTA)n Simple_repeat Simple_repeat 1 41 0 2438 74 0 0 chr4 61158794 61159105 -123129557 + AluY SINE Alu 1 311 0 1640 209 0 7 chr4 61159869 61160165 -123128497 - AluJo SINE Alu -18 294 1 266 352 30 57 chr4 61161443 61161673 -123126989 + MIR SINE MIR 32 255 -7 343 334 174 19 chr4 61161808 61162040 -123126622 - L3 LINE CR1 -613 964 769 2412 89 3 6 chr4 61162040 61162354 -123126308 + AluSp SINE Alu 1 313 0 343 334 174 19 chr4 61162354 61162654 -123126008 - L3 LINE CR1 -808 769 349 522 257 42 0 chr4 61163528 61163672 -123124990 - LTR16A LTR ERVL 0 450 301 744 267 67 41 chr4 61164641 61164893 -123123769 - HERV16 LTR ERVL -3007 1989 1726 2215 57 50 0 chr4 61164893 61165174 -123123488 - AluY SINE Alu -15 296 2 744 267 67 41 chr4 61165174 61165236 -123123426 - HERV16 LTR ERVL -3270 1726 1667 1279 293 52 5 chr4 61165416 61165842 -123122820 - HERV16 LTR ERVL -3624 1372 927 411 335 45 23 chr4 61166100 61166321 -123122341 - HERV16 LTR ERVL -4181 815 590 2077 146 25 25 chr4 61166342 61166706 -123121956 - THE1B LTR MaLR 0 364 1 10519 109 48 0 chr4 61166706 61168213 -123120449 - THE1B-int LTR MaLR 0 1580 1 1896 159 20 34 chr4 61168221 61168574 -123120088 - THE1B LTR MaLR -16 348 1 675 307 45 62 chr4 61168672 61169121 -123119541 - HERV16 LTR ERVL -4555 441 1 702 296 174 18 chr4 61169161 61169489 -123119173 - LTR16A LTR ERVL -56 394 16 262 315 88 11 chr4 61169740 61169921 -123118741 - MLT1L LTR MaLR -2 613 419 320 294 186 10 chr4 61170038 61170242 -123118420 - MLT1L LTR MaLR -375 240 1 2794 148 29 31 chr4 61170791 61171339 -123117323 + Tigger3(Golem) DNA MER2_type 2483 3029 0 2111 104 7 7 chr4 61171339 61171636 -123117026 + AluSx SINE Alu 1 297 -15 1329 227 36 10 chr4 61171772 61172164 -123116498 - AluJb SINE Alu 0 400 1 613 246 24 30 chr4 61173294 61173461 -123115201 + MIR SINE MIR 2 167 -95 5419 38 11 0 chr4 61173894 61174548 -123114114 + L1PA4 LINE L1 5489 6149 -6 4505 174 71 35 chr4 61174794 61175814 -123112848 - L1MCa LINE L1 -5369 1057 2 365 284 19 22 chr4 61176033 61176322 -123112340 - MER112 DNA MER1_type -4 256 2 21 36 0 0 chr4 61176552 61176580 -123112082 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr4 61176675 61176712 -123111950 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr4 61176867 61176896 -123111766 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 61177053 61177081 -123111581 + AT_rich Low_complexity Low_complexity 1 28 0 358 281 105 44 chr4 61178283 61178511 -123110151 - MLT1H LTR MaLR -2 547 306 22224 188 24 14 chr4 61178920 61185389 -123103273 + L1PA11 LINE L1 1 7610 -2 22 35 0 0 chr4 61185681 61185710 -123102952 + AT_rich Low_complexity Low_complexity 1 29 0 1544 216 53 13 chr4 61186010 61186385 -123102277 - MLT1B LTR MaLR 0 390 1 351 65 0 0 chr4 61186410 61186456 -123102206 + (TA)n Simple_repeat Simple_repeat 1 46 0 449 285 148 55 chr4 61186661 61186991 -123101671 + L3 LINE CR1 1207 1567 -10 251 190 38 13 chr4 61187515 61187594 -123101068 - L1MC3 LINE L1 -1134 6651 6571 579 184 0 0 chr4 61187595 61187819 -123100843 + (TA)n Simple_repeat Simple_repeat 1 224 0 306 303 18 9 chr4 61187825 61187934 -123100728 - L1MC4 LINE L1 -1319 6723 6614 * 345 169 0 0 chr4 61187870 61187953 -123100709 + (TA)n Simple_repeat Simple_repeat 2 84 0 27 62 0 0 chr4 61188184 61188232 -123100430 + AT_rich Low_complexity Low_complexity 1 48 0 244 271 131 0 chr4 61188324 61188431 -123100231 - MLT1I LTR MaLR -5 404 284 328 299 69 44 chr4 61188534 61188738 -123099924 - MLT1J2 LTR MaLR -239 211 3 629 299 55 23 chr4 61189107 61189415 -123099247 + MLT1I LTR MaLR 90 407 -2 255 61 0 0 chr4 61189900 61189933 -123098729 + (TC)n Simple_repeat Simple_repeat 1 33 0 7843 12 2 0 chr4 61190692 61192039 -123096623 - L1PA2 LINE L1 -1 6154 4807 302 310 20 20 chr4 61192619 61192719 -123095943 + L2 LINE L2 3155 3254 -18 203 375 158 51 chr4 61192931 61193323 -123095339 + L2 LINE L2 2824 3257 -15 2320 154 54 5 chr4 61193440 61193848 -123094814 - MSTA LTR MaLR 0 428 1 392 319 42 16 chr4 61195082 61195269 -123093393 + MIR SINE MIR 19 212 -50 2503 64 0 0 chr4 61196136 61196447 -123092215 + AluY SINE Alu 1 311 0 1424 230 8 32 chr4 61196611 61196990 -123091672 - MLT1A2 LTR MaLR -4 370 1 265 302 62 99 chr4 61197068 61197310 -123091352 + HERVL68 LTR ERVL 2491 2723 -314 357 237 144 0 chr4 61197815 61197933 -123090729 - MIR SINE MIR -29 233 99 180 390 13 0 chr4 61198203 61198280 -123090382 + L2 LINE L2 2933 3010 -262 24 0 0 0 chr4 61198615 61198639 -123090023 + AT_rich Low_complexity Low_complexity 1 24 0 518 229 35 42 chr4 61199948 61200092 -123088570 + L2 LINE L2 3171 3313 0 205 167 0 0 chr4 61201700 61201736 -123086926 + (TG)n Simple_repeat Simple_repeat 2 37 0 192 170 0 0 chr4 61203796 61203849 -123084813 + (TGAA)n Simple_repeat Simple_repeat 4 56 0 2015 124 0 7 chr4 61204376 61204689 -123083973 - AluSc SINE Alu 0 311 1 1878 297 82 36 chr4 61204711 61205779 -123082883 - HAL1 LINE L1 -2 2505 1390 1526 217 75 8 chr4 61205809 61206169 -123082493 - MLT1B LTR MaLR 0 390 7 327 340 46 26 chr4 61206169 61206322 -123082340 - HAL1 LINE L1 -1190 1317 1162 22 56 0 0 chr4 61206338 61206374 -123082288 + AT_rich Low_complexity Low_complexity 1 36 0 415 267 131 16 chr4 61206472 61206663 -123081999 - HAL1 LINE L1 -1554 953 741 1063 216 21 8 chr4 61206691 61206927 -123081735 + MER8 DNA MER2_type 1 239 0 654 232 43 54 chr4 61207362 61207547 -123081115 + MER20 DNA MER1_type 37 219 0 425 312 23 17 chr4 61207828 61208001 -123080661 + MER5B DNA MER1_type 1 174 -4 438 310 118 18 chr4 61208700 61208929 -123079733 - MIR SINE MIR -5 257 6 345 274 82 15 chr4 61209479 61209614 -123079048 + MIR SINE MIR 71 214 -48 204 125 0 0 chr4 61210210 61210242 -123078420 + (TA)n Simple_repeat Simple_repeat 2 33 0 318 293 0 0 chr4 61210347 61210463 -123078199 + (CA)n Simple_repeat Simple_repeat 1 116 0 261 134 45 15 chr4 61210480 61210547 -123078115 - LOR1-int LTR ERV1 -7198 922 854 261 134 45 15 chr4 61210564 61210631 -123078031 - LOR1-int LTR ERV1 -7198 922 854 591 270 0 0 chr4 61210631 61210895 -123077767 + (TA)n Simple_repeat Simple_repeat 1 264 0 1233 215 46 52 chr4 61211080 61211447 -123077215 - MLT1A1 LTR MaLR 0 365 1 15896 174 35 23 chr4 61212645 61219780 -123068882 + L1MA1 LINE L1 505 7721 0 794 244 56 0 chr4 61222017 61222197 -123066465 + MER3 DNA MER1_type 15 204 -5 242 283 30 0 chr4 61222246 61222345 -123066317 - L1ME2 LINE L1 0 6164 6063 22 0 0 0 chr4 61222462 61222484 -123066178 + AT_rich Low_complexity Low_complexity 1 22 0 3460 167 31 3 chr4 61223122 61223733 -123064929 + Tigger1 DNA MER2_type 1 628 -1790 1482 154 7 33 chr4 61223731 61224003 -123064659 + Tigger1 DNA MER2_type 2154 2418 0 * 230 325 77 43 chr4 61227932 61228049 -123060613 - MIR SINE MIR -113 149 29 228 379 11 0 chr4 61228102 61228189 -123060473 - L2 LINE L2 -219 3053 2966 218 358 47 40 chr4 61231003 61231151 -123057511 + L2 LINE L2 3122 3270 -2 22 0 0 0 chr4 61231470 61231492 -123057170 + AT_rich Low_complexity Low_complexity 1 22 0 1046 261 11 61 chr4 61231707 61232086 -123056576 - MLT2C1 LTR ERVL -35 362 3 205 248 105 38 chr4 61234735 61234840 -123053822 - MIR SINE MIR -32 230 119 678 82 24 158 chr4 61235740 61235919 -123052743 + L1MB1 LINE L1 6007 6167 -1 22 35 0 0 chr4 61235922 61235951 -123052711 + AT_rich Low_complexity Low_complexity 1 29 0 1516 182 27 20 chr4 61236659 61236956 -123051706 - AluJo SINE Alu -11 301 3 207 0 0 0 chr4 61238330 61238353 -123050309 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1914 168 29 6 chr4 61239122 61239462 -123049200 + MSTB LTR MaLR 1 348 -78 2875 165 28 8 chr4 61240234 61240744 -123047918 - MLT2B1 LTR ERVL 0 520 1 500 348 63 13 chr4 61241781 61242175 -123046487 - L1PA12 LINE L1 -7167 414 1 339 177 0 0 chr4 61242181 61242243 -123046419 - L1M1 LINE L1 -5468 2097 2036 1693 165 45 28 chr4 61243069 61243427 -123045235 - THE1B LTR MaLR 0 364 1 1885 169 17 22 chr4 61243831 61244193 -123044469 - THE1C LTR MaLR -2 373 14 1787 164 0 11 chr4 61245191 61245478 -123043184 - AluJb SINE Alu -27 285 2 2096 111 10 0 chr4 61246088 61246377 -123042285 + AluSg SINE Alu 6 297 -13 214 175 25 0 chr4 61246423 61246463 -123042199 + (TG)n Simple_repeat Simple_repeat 1 41 0 28 0 0 0 chr4 61247391 61247419 -123041243 + AT_rich Low_complexity Low_complexity 1 28 0 230 0 33 0 chr4 61247500 61247530 -123041132 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 1372 220 19 0 chr4 61247660 61247924 -123040738 - AluJb SINE Alu -43 269 1 223 397 17 9 chr4 61248937 61249053 -123039609 + MIR3 SINE MIR 87 203 -5 221 301 118 57 chr4 61249318 61249427 -123039235 - MIR SINE MIR -59 149 34 221 336 45 18 chr4 61249841 61249951 -123038711 + MIR3 SINE MIR 86 198 -10 423 303 0 8 chr4 61250102 61250224 -123038438 + MIR SINE MIR 110 230 -32 2400 71 0 7 chr4 61250420 61250728 -123037934 - AluSp SINE Alu -5 308 3 248 310 108 8 chr4 61250933 61251062 -123037600 + L2 LINE L2 1908 2049 -1265 21 36 0 0 chr4 61251891 61251919 -123036743 + AT_rich Low_complexity Low_complexity 1 28 0 31 58 0 0 chr4 61253010 61253062 -123035600 + AT_rich Low_complexity Low_complexity 1 52 0 714 140 18 0 chr4 61253062 61253176 -123035486 - Charlie3 DNA MER1_type -8 2702 2587 7020 100 5 6 chr4 61253191 61254147 -123034515 - Charlie3 DNA MER1_type -1755 955 1 2637 158 17 58 chr4 61254854 61255436 -123033226 - MER89 LTR ERV1 0 559 2 197 275 72 14 chr4 61255731 61255800 -123032862 + L2 LINE L2 3241 3313 0 1067 210 21 34 chr4 61256226 61256464 -123032198 + MER8 DNA MER2_type 4 238 -1 387 313 71 65 chr4 61256804 61257114 -123031548 - L2 LINE L2 -1 3312 3001 321 301 58 0 chr4 61257346 61257449 -123031213 - L2 LINE L2 -593 2721 2613 269 368 15 38 chr4 61257764 61257897 -123030765 + MER5A DNA MER1_type 54 183 -6 216 0 0 0 chr4 61258511 61258535 -123030127 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1862 143 11 4 chr4 61258538 61258818 -123029844 - AluSx SINE Alu -30 282 1 225 0 0 0 chr4 61258994 61259019 -123029643 + (A)n Simple_repeat Simple_repeat 1 25 0 339 356 10 10 chr4 61259318 61259419 -123029243 - MIR3 SINE MIR -93 115 15 197 274 158 0 chr4 61259511 61259606 -123029056 + L2 LINE L2 2684 2793 -521 5996 145 9 39 chr4 61259695 61261006 -123027656 - L1MA3 LINE L1 -8 7716 6443 3768 202 21 5 chr4 61261007 61261843 -123026819 - L1MA3 LINE L1 -1604 5961 5112 234 191 0 0 chr4 61261859 61261906 -123026756 + CT-rich Low_complexity Low_complexity 3 49 0 726 154 23 17 chr4 61261920 61262095 -123026567 + CT-rich Low_complexity Low_complexity 5 180 0 204 97 0 0 chr4 61262112 61262143 -123026519 + (TTCC)n Simple_repeat Simple_repeat 4 34 0 18838 186 34 24 chr4 61262157 61264078 -123024584 - L1MA3 LINE L1 -2451 5114 3214 2333 87 0 10 chr4 61264078 61264389 -123024273 - AluY SINE Alu -3 308 1 18838 186 34 24 chr4 61264389 61264995 -123023667 - L1MA3 LINE L1 -4351 3214 2616 1631 180 25 3 chr4 61264995 61265279 -123023383 - AluSx SINE Alu 0 312 23 18838 186 34 24 chr4 61265279 61267808 -123020854 - L1MA3 LINE L1 -4949 2616 7 850 224 6 0 chr4 61268190 61268346 -123020316 - FRAM SINE Alu -23 153 1 426 193 7 104 chr4 61268362 61268398 -123020264 - FLAM_A SINE Alu -171 140 102 2469 64 0 3 chr4 61268398 61268709 -123019953 + AluY SINE Alu 2 311 0 426 193 7 104 chr4 61268709 61268807 -123019855 - FLAM_A SINE Alu -209 102 19 351 123 62 0 chr4 61269388 61269453 -123019209 + GA-rich Low_complexity Low_complexity 3 71 0 637 179 17 28 chr4 61269454 61269633 -123019029 + A-rich Low_complexity Low_complexity 3 179 0 235 239 23 11 chr4 61269658 61269746 -123018916 + A-rich Low_complexity Low_complexity 4 92 0 724 182 96 149 chr4 61271199 61271688 -123016974 - MER4C LTR ERV1 0 465 3 1731 120 19 4 chr4 61271844 61272111 -123016551 - AluSp SINE Alu 0 313 43 420 306 50 44 chr4 61272424 61272583 -123016079 - L2 LINE L2 -4 3309 3147 1283 230 47 68 chr4 61272583 61273056 -123015606 + MLT1C LTR MaLR 5 467 0 420 306 50 44 chr4 61273056 61273076 -123015586 - L2 LINE L2 -166 3147 3129 449 134 10 62 chr4 61273076 61273173 -123015489 + MER50 LTR ERV1 1 92 -642 777 158 23 8 chr4 61273274 61273407 -123015255 - AluSq/x SINE Alu -177 135 1 231 36 0 0 chr4 61273583 61273611 -123015051 + (A)n Simple_repeat Simple_repeat 1 28 0 22 35 0 0 chr4 61274196 61274225 -123014437 + AT_rich Low_complexity Low_complexity 1 29 0 194 348 30 103 chr4 61274608 61274910 -123013752 + L2 LINE L2 2698 2977 -337 945 306 57 53 chr4 61274952 61275580 -123013082 - L2 LINE L2 -4 3309 2680 928 349 95 17 chr4 61275644 61276223 -123012439 - L2 LINE L2 -2214 1100 477 1636 194 7 3 chr4 61276957 61277266 -123011396 - AluJb SINE Alu -2 310 1 24 67 0 0 chr4 61278120 61278165 -123010497 + AT_rich Low_complexity Low_complexity 1 45 0 245 308 236 19 chr4 61281394 61281602 -123007060 + L2 LINE L2 2960 3212 -101 445 390 16 0 chr4 61281936 61282185 -123006477 + L2 LINE L2 2118 2370 -944 430 273 81 71 chr4 61282417 61283305 -123005357 - L1MEd LINE L1 -4731 1579 648 1280 154 0 10 chr4 61283399 61283638 -123005024 - AluJb SINE Alu 0 323 87 212 227 52 23 chr4 61284912 61284921 -123003741 + (TA)n Simple_repeat Simple_repeat 2 9 -169 2368 107 5 46 chr4 61284921 61285312 -123003350 - THE1C LTR MaLR 0 375 1 212 227 52 23 chr4 61285312 61285474 -123003188 + (TA)n Simple_repeat Simple_repeat 9 178 0 29 0 0 0 chr4 61285995 61286024 -123002638 + AT_rich Low_complexity Low_complexity 1 29 0 306 302 71 50 chr4 61286106 61286288 -123002374 + MIR SINE MIR 68 253 -9 248 368 43 8 chr4 61286298 61286415 -123002247 - MIR SINE MIR -56 152 32 222 167 119 0 chr4 61287895 61287937 -123000725 - MER5B DNA MER1_type -129 49 3 255 311 19 48 chr4 61288217 61288320 -123000342 - MIR SINE MIR -111 151 52 748 271 41 58 chr4 61289350 61289693 -122998969 - L2 LINE L2 -619 2695 2359 1530 265 43 45 chr4 61289996 61290148 -122998514 + MLT2B3 LTR ERVL 2 153 -401 2476 52 0 10 chr4 61290148 61290455 -122998207 - AluY SINE Alu -7 304 1 1530 265 43 45 chr4 61290455 61290811 -122997851 + MLT2B3 LTR ERVL 153 509 -45 3775 244 62 47 chr4 61290926 61291447 -122997215 + L1M4 LINE L1 6 518 -6024 3518 133 66 5 chr4 61291447 61291510 -122997152 + LTR9B LTR ERV1 1 59 -585 219 36 0 0 chr4 61291510 61291538 -122997124 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3518 133 66 5 chr4 61291538 61292081 -122996581 + LTR9B LTR ERV1 59 644 0 3775 244 62 47 chr4 61292081 61292769 -122995893 + L1M4 LINE L1 518 1233 -5309 208 261 239 0 chr4 61293173 61293261 -122995401 - L3 LINE CR1 -1 1576 1468 21 0 0 0 chr4 61294201 61294222 -122994440 + AT_rich Low_complexity Low_complexity 1 21 0 317 292 45 52 chr4 61295135 61295289 -122993373 + MIR SINE MIR 57 209 -53 192 318 100 18 chr4 61297059 61297169 -122991493 - MIR SINE MIR -47 215 97 25 31 0 0 chr4 61297174 61297206 -122991456 + AT_rich Low_complexity Low_complexity 1 32 0 281 270 54 54 chr4 61297408 61297630 -122991032 - L1ME2 LINE L1 -236 5928 5707 3244 148 76 7 chr4 61297645 61298252 -122990410 + MER39B LTR ERV1 4 652 -1 410 109 0 0 chr4 61298602 61298666 -122989996 + L1PA8 LINE L1 6103 6166 -6 1577 267 45 32 chr4 61299228 61299783 -122988879 + L1MCb LINE L1 -130 431 -5476 373 107 13 67 chr4 61299783 61299835 -122988827 - Tigger4(Zombi) DNA MER2_type 0 2731 2683 3164 73 34 18 chr4 61299835 61300272 -122988390 - MLT2A1 LTR ERVL 0 444 1 373 107 13 67 chr4 61300272 61300294 -122988368 - Tigger4(Zombi) DNA MER2_type -48 2683 2661 1758 258 45 16 chr4 61300333 61301310 -122987352 + L1MCb LINE L1 432 1436 -4851 704 218 37 24 chr4 61301319 61301524 -122987138 + L1MCb LINE L1 1691 1866 -4560 21 0 0 0 chr4 61301544 61301565 -122987097 + AT_rich Low_complexity Low_complexity 1 21 0 199 306 35 24 chr4 61302638 61302723 -122985939 - L2 LINE L2 -2047 1267 1182 530 323 30 5 chr4 61302753 61302951 -122985711 + MIR SINE MIR 12 214 -48 1699 206 25 6 chr4 61303297 61303622 -122985040 - MLT1A1 LTR MaLR -34 331 1 2080 239 47 0 chr4 61303625 61304069 -122984593 - MLT1A1-int LTR MaLR -3 1732 1268 * 3287 241 20 50 chr4 61304041 61304941 -122983721 - MLT1A1-int LTR MaLR -699 1036 164 862 169 0 0 chr4 61305042 61305190 -122983472 - MLT1A1 LTR MaLR -217 148 1 194 277 21 0 chr4 61305498 61305545 -122983117 - L2 LINE L2 -2812 502 455 7544 30 3 0 chr4 61305649 61306693 -122981969 + L1PA3 LINE L1 5109 6155 0 2095 128 0 0 chr4 61307163 61307453 -122981209 - AluSx SINE Alu -22 290 1 202 346 40 20 chr4 61307484 61307585 -122981077 - L2 LINE L2 -285 3028 2926 275 230 100 20 chr4 61307599 61307699 -122980963 - L2 LINE L2 -697 2617 2510 2685 141 12 10 chr4 61308260 61308678 -122979984 + MSTA LTR MaLR 8 426 -2 2245 117 3 0 chr4 61311749 61312056 -122976606 - AluSp SINE Alu -5 308 1 211 378 41 10 chr4 61312072 61312170 -122976492 + MER5A DNA MER1_type 86 186 -3 1844 170 3 0 chr4 61312823 61313135 -122975527 - AluSp SINE Alu 0 313 1 30 27 0 0 chr4 61313141 61313178 -122975484 + AT_rich Low_complexity Low_complexity 1 37 0 2172 105 3 3 chr4 61313379 61313675 -122974987 - AluSp SINE Alu -17 296 1 447 367 68 26 chr4 61313909 61314440 -122974222 + HAL1 LINE L1 968 1520 -987 2067 151 0 0 chr4 61314735 61315033 -122973629 - AluSx SINE Alu -14 298 1 33 43 0 0 chr4 61315421 61315468 -122973194 + AT_rich Low_complexity Low_complexity 1 47 0 7828 212 82 86 chr4 61315599 61316324 -122972338 - L1PA16 LINE L1 -1 7603 6876 2102 141 7 0 chr4 61316324 61316621 -122972041 - AluSx SINE Alu -13 299 1 7828 212 82 86 chr4 61316621 61317645 -122971017 - L1PA16 LINE L1 -728 6876 5849 1632 142 0 8 chr4 61317645 61317891 -122970771 - AluSx SINE Alu -16 296 53 7828 212 82 86 chr4 61317891 61318092 -122970570 - L1PA16 LINE L1 -1755 5849 5649 2500 112 8 11 chr4 61318092 61318457 -122970205 - THE1B LTR MaLR 0 364 1 7828 212 82 86 chr4 61318457 61319351 -122969311 - L1PA16 LINE L1 -1955 5649 4753 10916 34 4 1 chr4 61319351 61321435 -122967227 - L1PA4 LINE L1 -3 6152 4059 7828 212 82 86 chr4 61321435 61323145 -122965517 - L1PA16 LINE L1 -2851 4753 2709 978 320 34 13 chr4 61323168 61323552 -122965110 - L1PA16 LINE L1 -5007 2574 2183 246 237 52 31 chr4 61323771 61323868 -122964794 - L1PA16 LINE L1 -5399 2182 2084 25 90 0 0 chr4 61324116 61324183 -122964479 + AT_rich Low_complexity Low_complexity 1 67 0 1629 215 73 39 chr4 61324300 61324885 -122963777 - L1M4c LINE L1 -2826 3144 2540 3052 264 97 28 chr4 61324907 61326441 -122962221 - L1M4c LINE L1 -4525 1366 1 400 187 0 6 chr4 61326738 61326817 -122961845 - AluS SINE Alu -242 61 1 532 176 25 34 chr4 61326817 61326936 -122961726 - L1M4 LINE L1 -830 5316 5199 194 321 181 50 chr4 61327362 61328026 -122960636 + L2 LINE L2 1712 2462 -852 364 285 57 16 chr4 61328058 61328314 -122960348 + L1ME LINE L1 5320 5582 -539 1019 329 59 18 chr4 61328618 61329074 -122959588 - LTR33 LTR ERVL 0 521 47 1072 199 18 104 chr4 61330873 61331200 -122957462 + AluJo SINE Alu 1 299 -3 26 0 0 0 chr4 61331200 61331226 -122957436 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr4 61331655 61331679 -122956983 + AT_rich Low_complexity Low_complexity 1 24 0 27 29 0 0 chr4 61331813 61331847 -122956815 + AT_rich Low_complexity Low_complexity 1 34 0 320 273 104 47 chr4 61331885 61332147 -122956515 - MLT1L LTR MaLR 0 615 230 22 35 0 0 chr4 61332342 61332371 -122956291 + AT_rich Low_complexity Low_complexity 1 29 0 2080 106 17 0 chr4 61332433 61332735 -122955927 - AluSp SINE Alu -6 307 1 2129 191 30 65 chr4 61335813 61336385 -122952277 - MLT2B3 LTR ERVL 0 554 3 667 279 99 79 chr4 61336770 61337518 -122951144 + LTR41 LTR ERVL 1 763 -10 956 161 118 35 chr4 61337974 61338229 -122950433 - L1MB1 LINE L1 0 6168 5893 577 191 0 9 chr4 61338210 61338320 -122950342 - MLT-int LTR MaLR -1551 184 76 * 2174 216 23 33 chr4 61338322 61338835 -122949827 - MLT1A1-int LTR MaLR -1046 689 182 254 159 23 0 chr4 61338842 61338886 -122949776 - MLT1A1-int LTR MaLR -1690 45 1 863 236 47 13 chr4 61338886 61339203 -122949459 - MLT1A1 LTR MaLR 0 365 4 469 329 145 30 chr4 61339210 61339617 -122949045 + L2 LINE L2 337 790 -2524 246 32 0 0 chr4 61339880 61339911 -122948751 + (TG)n Simple_repeat Simple_repeat 2 32 0 376 286 109 9 chr4 61340139 61340359 -122948303 - L1M4 LINE L1 -1487 4659 4418 247 366 19 25 chr4 61340392 61340553 -122948109 - L2 LINE L2 -2 3311 3152 2389 224 15 29 chr4 61340558 61340877 -122947785 + MLT2B1 LTR ERVL 1 312 -208 2083 173 13 68 chr4 61340877 61341334 -122947328 + MSTB1 LTR MaLR 1 432 0 2389 224 15 29 chr4 61341334 61341541 -122947121 + MLT2B1 LTR ERVL 312 520 0 2434 204 41 29 chr4 61341546 61342101 -122946561 - MER68 LTR ERV1 0 562 1 478 311 85 21 chr4 61342101 61342331 -122946331 - L2 LINE L2 -163 3150 2906 6857 259 81 32 chr4 61342379 61345672 -122942990 + L1M3e LINE L1 462 3623 -3942 384 313 42 0 chr4 61345714 61345906 -122942756 + L1M3e LINE L1 2607 2806 -4759 8012 206 36 49 chr4 61345908 61346367 -122942295 + L1M3e LINE L1 3656 4120 -3445 2357 103 0 3 chr4 61346367 61346678 -122941984 - AluSx SINE Alu -2 310 1 8012 206 36 49 chr4 61346678 61348632 -122940030 + L1M3e LINE L1 4120 6037 -1528 5587 157 14 13 chr4 61348635 61350268 -122938394 - L1PB1 LINE L1 -3 6148 4518 * 8592 211 8 7 chr4 61350264 61352193 -122936469 + L1MA8 LINE L1 3712 5642 -1923 3486 174 27 20 chr4 61352203 61352720 -122935942 + L1MA8 LINE L1 6026 6553 -1055 255 61 0 0 chr4 61352720 61352753 -122935909 + (CA)n Simple_repeat Simple_repeat 2 34 0 3486 174 27 20 chr4 61352753 61353069 -122935593 + L1MA8 LINE L1 6553 6865 -743 5312 121 22 9 chr4 61353072 61354256 -122934406 + L1PA16 LINE L1 4970 6164 -2 4182 172 13 20 chr4 61354256 61355111 -122933551 + L1MA8 LINE L1 6855 7710 0 180 304 0 0 chr4 61355175 61355231 -122933431 - L2 LINE L2 -1123 2191 2136 2051 325 141 28 chr4 61355263 61356975 -122931687 - L2 LINE L2 -1344 1970 66 1771 170 13 20 chr4 61357239 61357545 -122931117 + AluJb SINE Alu 1 304 -8 22 0 0 0 chr4 61358250 61358272 -122930390 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 61359454 61359477 -122929185 + AT_rich Low_complexity Low_complexity 1 23 0 214 380 28 0 chr4 61359999 61360107 -122928555 + L2 LINE L2 2731 2841 -473 217 385 0 10 chr4 61360200 61360296 -122928366 + L2 LINE L2 2985 3079 -193 621 264 0 0 chr4 61360652 61360781 -122927881 - FAM SINE Alu -33 152 24 237 261 78 72 chr4 61361247 61361400 -122927262 + L2 LINE L2 3158 3311 -2 212 209 0 0 chr4 61361658 61361701 -122926961 + L2 LINE L2 3263 3305 -8 22 0 0 0 chr4 61362457 61362479 -122926183 + AT_rich Low_complexity Low_complexity 1 22 0 726 96 0 0 chr4 61363257 61363361 -122925301 + (TTCC)n Simple_repeat Simple_repeat 4 107 0 1377 61 0 0 chr4 61363364 61363544 -122925118 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 1002 127 0 0 chr4 61363544 61363702 -122924960 + (TTCC)n Simple_repeat Simple_repeat 3 160 0 3902 160 14 43 chr4 61363702 61364427 -122924235 - MER50 LTR ERV1 -30 704 1 269 266 16 0 chr4 61364919 61364983 -122923679 + CT-rich Low_complexity Low_complexity 3 67 0 2434 242 93 26 chr4 61365462 61366588 -122922074 + L1MCb LINE L1 724 2005 -4559 1435 202 39 60 chr4 61366587 61367002 -122921660 + L1MC3 LINE L1 7131 7536 -249 * 499 208 16 8 chr4 61367055 61367180 -122921482 + L1MC3 LINE L1 7653 7778 -7 16655 150 18 98 chr4 61367346 61371199 -122917463 + L1P LINE L1 2 3549 -2597 2189 76 4 0 chr4 61371705 61371982 -122916680 - AluSp SINE Alu -1 312 35 302 193 0 12 chr4 61372629 61372712 -122915950 + (GAATG)n Satellite Satellite 4 85 0 709 177 2 2 chr4 61372756 61373262 -122915400 + (GAATG)n Satellite Satellite 1 506 0 727 167 0 24 chr4 61373311 61373764 -122914898 + (GAATG)n Satellite Satellite 1 441 0 10776 106 5 5 chr4 61373914 61375531 -122913131 - L1P LINE L1 -1369 4777 3161 466 171 12 22 chr4 61375751 61375936 -122912726 + MLT1B LTR MaLR 1 258 -132 313 371 26 60 chr4 61376816 61377048 -122911614 + L2 LINE L2 2560 2783 -531 1626 188 42 15 chr4 61377301 61377631 -122911031 + MER44D DNA MER2_type 1 609 0 2907 209 36 12 chr4 61377696 61378361 -122910301 - L1MB8 LINE L1 -5 6173 5493 354 217 54 0 chr4 61378428 61378520 -122910142 - L1MB8 LINE L1 -700 5484 5388 225 65 0 0 chr4 61381248 61381279 -122907383 + (T)n Simple_repeat Simple_repeat 1 31 0 2448 43 3 20 chr4 61381991 61382292 -122906370 - AluY SINE Alu -15 296 1 22 56 0 0 chr4 61383309 61383345 -122905317 + AT_rich Low_complexity Low_complexity 1 36 0 271 393 74 0 chr4 61384063 61384198 -122904464 + MER91A DNA MER1_type 31 175 -21 21 82 0 0 chr4 61385488 61385537 -122903125 + AT_rich Low_complexity Low_complexity 1 49 0 2305 124 41 6 chr4 61386080 61386442 -122902220 + THE1C LTR MaLR 1 375 0 9814 126 41 7 chr4 61386442 61387970 -122900692 + THE1C-int LTR MaLR 1 1580 0 1921 183 22 11 chr4 61387970 61388341 -122900321 + THE1C LTR MaLR 1 375 0 290 279 0 0 chr4 61388812 61388891 -122899771 - L1MB8 LINE L1 -1282 4864 4786 687 266 58 0 chr4 61388892 61389080 -122899582 - MER77 LTR ERV1 0 605 407 * 902 211 81 81 chr4 61389076 61389361 -122899301 - MER77 LTR ERV1 -320 285 1 2242 107 3 7 chr4 61389536 61389845 -122898817 + AluSp SINE Alu 1 308 -5 450 281 35 0 chr4 61391191 61391305 -122897357 - MER21-int LTR ERV1 -622 3569 3452 1310 203 49 11 chr4 61391449 61391735 -122896927 + MSTB1 LTR MaLR 119 415 -17 701 241 35 82 chr4 61391926 61392208 -122896454 - MER21-int LTR ERV1 -1980 2211 1943 180 0 0 0 chr4 61392816 61392836 -122895826 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1864 153 10 7 chr4 61393317 61393617 -122895045 + AluJo SINE Alu 12 312 0 1246 261 42 37 chr4 61393786 61394264 -122894398 - MER21-int LTR ERV1 -2225 4533 4059 1925 164 43 66 chr4 61394264 61394702 -122893960 + MSTB1 LTR MaLR 5 432 0 1246 261 42 37 chr4 61394702 61394735 -122893927 - MER21-int LTR ERV1 -2699 4059 1218 1116 229 39 82 chr4 61394809 61395198 -122893464 - MLT1A2 LTR MaLR 0 374 3 1080 160 89 5 chr4 61395254 61395467 -122893195 - L1PA13 LINE L1 -3 6160 5930 1560 99 5 0 chr4 61395574 61395795 -122892867 - L1PA13 LINE L1 -554 5609 5388 352 228 13 13 chr4 61396225 61396303 -122892359 + Tigger5 DNA MER2_type 1 78 -2245 334 222 16 0 chr4 61396303 61396366 -122892296 - Tigger5 DNA MER2_type -3 2320 2257 333 273 0 13 chr4 61396365 61396442 -122892220 + Tigger5 DNA MER2_type 2248 2323 0 * 580 217 11 23 chr4 61396442 61396593 -122892069 - L1MA9 LINE L1 -36 6264 6123 190 353 134 38 chr4 61397120 61397485 -122891177 + L2 LINE L2 2343 2742 -572 183 188 0 0 chr4 61397792 61397840 -122890822 + (TA)n Simple_repeat Simple_repeat 2 49 0 1025 286 45 56 chr4 61397901 61398079 -122890583 + MLT1G LTR MaLR 22 200 -390 2173 94 3 3 chr4 61398079 61398377 -122890285 + AluSc SINE Alu 1 298 -11 1025 286 45 56 chr4 61398377 61398732 -122889930 + MLT1G LTR MaLR 200 590 0 189 0 0 0 chr4 61399087 61399108 -122889554 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 960 216 0 20 chr4 61399111 61399310 -122889352 - AluJb SINE Alu -30 282 88 22 88 0 0 chr4 61399932 61399989 -122888673 + AT_rich Low_complexity Low_complexity 1 57 0 195 42 0 0 chr4 61400385 61400409 -122888253 + (TTA)n Simple_repeat Simple_repeat 1 24 0 2742 69 3 11 chr4 61400410 61400774 -122887888 - L1PA8 LINE L1 -18 6154 5794 7601 105 7 16 chr4 61400777 61401938 -122886724 + L1P LINE L1 3434 4584 -1562 525 222 0 0 chr4 61402016 61402115 -122886547 - Tigger1 DNA MER2_type 0 2418 2320 9393 190 13 10 chr4 61402215 61403976 -122884686 - Tigger1 DNA MER2_type -629 1789 24 282 345 12 0 chr4 61403981 61404065 -122884597 + L2 LINE L2 3179 3263 -9 23 0 0 0 chr4 61405336 61405359 -122883303 + AT_rich Low_complexity Low_complexity 1 23 0 27 49 0 0 chr4 61405590 61405631 -122883031 + AT_rich Low_complexity Low_complexity 1 41 0 1072 274 61 45 chr4 61406105 61406734 -122881928 - L1ME1 LINE L1 -28 6207 5590 2169 132 3 0 chr4 61406734 61407045 -122881617 - AluSx SINE Alu 0 312 1 1072 274 61 45 chr4 61407045 61407447 -122881215 - L1ME1 LINE L1 -645 5590 4968 346 202 88 9 chr4 61407456 61407570 -122881092 - L1ME1 LINE L1 -2212 4003 3881 593 199 8 0 chr4 61407606 61407737 -122880925 + GA-rich Low_complexity Low_complexity 1 132 0 970 168 37 31 chr4 61407744 61407935 -122880727 + AluJb SINE Alu 120 311 -1 656 247 72 47 chr4 61407958 61408168 -122880494 - L1ME1 LINE L1 -3925 2471 2268 207 0 0 0 chr4 61408168 61408191 -122880471 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 11610 58 2 7 chr4 61408191 61410405 -122878257 - L1PA5 LINE L1 -12 6142 3881 656 247 72 47 chr4 61410405 61410598 -122878064 - L1ME1 LINE L1 -4127 2269 2057 25 31 0 0 chr4 61410907 61410939 -122877723 + AT_rich Low_complexity Low_complexity 1 32 0 2191 119 0 0 chr4 61411784 61412087 -122876575 + AluSg SINE Alu 1 303 -7 234 295 0 0 chr4 61412631 61412692 -122875970 + (TA)n Simple_repeat Simple_repeat 2 62 0 25 65 0 0 chr4 61413432 61413478 -122875184 + AT_rich Low_complexity Low_complexity 1 46 0 440 179 110 14 chr4 61413539 61413684 -122874978 - L1ME1 LINE L1 -4406 1990 1832 2293 283 126 23 chr4 61414134 61415420 -122873242 - L1ME1 LINE L1 -4929 1467 49 194 374 97 28 chr4 61415674 61416035 -122872627 + L2 LINE L2 2412 2797 -517 28 0 0 0 chr4 61416050 61416078 -122872584 + AT_rich Low_complexity Low_complexity 1 28 0 693 259 0 0 chr4 61416267 61416429 -122872233 + FAM SINE Alu 1 162 -13 362 378 13 0 chr4 61418970 61419121 -122869541 - MIR SINE MIR -60 202 50 26 0 0 0 chr4 61419664 61419690 -122868972 + AT_rich Low_complexity Low_complexity 1 26 0 377 274 67 15 chr4 61420191 61420326 -122868336 + MIR SINE MIR 65 206 -56 28 0 0 0 chr4 61420326 61420354 -122868308 + AT_rich Low_complexity Low_complexity 1 28 0 1694 197 3 3 chr4 61420358 61420667 -122867995 + AluJb SINE Alu 2 310 -2 308 342 21 31 chr4 61421918 61422111 -122866551 + HAL1 LINE L1 1500 1690 -817 26 0 0 0 chr4 61422233 61422259 -122866403 + AT_rich Low_complexity Low_complexity 1 26 0 566 195 59 0 chr4 61422412 61422530 -122866132 - AluJb SINE Alu -14 298 174 301 320 93 27 chr4 61422990 61423215 -122865447 + MLT1L LTR MaLR 30 269 -346 578 143 193 37 chr4 61423341 61423502 -122865160 + MER5A DNA MER1_type 4 189 0 300 325 40 24 chr4 61423505 61423631 -122865031 + MLT1L LTR MaLR 401 528 -87 1959 108 0 0 chr4 61423965 61424225 -122864437 + AluSg SINE Alu 39 298 -12 314 310 49 39 chr4 61424431 61424634 -122864028 + L1ME LINE L1 3902 4106 -2040 2377 56 0 56 chr4 61424741 61425065 -122863597 + AluY SINE Alu 1 306 -5 399 312 156 25 chr4 61425361 61425726 -122862936 + L1ME LINE L1 4498 4910 -1236 1956 159 3 0 chr4 61425737 61426046 -122862616 - AluSx SINE Alu -2 310 1 245 229 119 46 chr4 61426558 61426667 -122861995 + L1ME LINE L1 5503 5619 -502 186 143 0 0 chr4 61426721 61426756 -122861906 + (TA)n Simple_repeat Simple_repeat 1 35 0 1847 314 32 18 chr4 61427617 61428279 -122860383 + L1M2a LINE L1 13 683 -6485 3912 248 53 21 chr4 61428726 61429317 -122859345 + L1M2a LINE L1 1733 2304 -4864 2777 10 0 0 chr4 61429317 61429623 -122859039 - AluYa5 SINE Alu -5 306 1 3912 248 53 21 chr4 61429623 61430248 -122858414 + L1M2a LINE L1 2304 2987 -4181 2275 263 38 35 chr4 61430574 61431849 -122856813 + L1M1 LINE L1 3045 4325 -3240 225 0 0 0 chr4 61431850 61431875 -122856787 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 3502 33 0 0 chr4 61431875 61432297 -122856365 - L1PA4 LINE L1 -12 6143 5722 4545 43 11 0 chr4 61432297 61433216 -122855446 + L1PA4 LINE L1 4814 5739 -416 4470 246 32 25 chr4 61433213 61434741 -122853921 + L1M1 LINE L1 4314 5852 -1713 * 6169 105 8 0 chr4 61434874 61435877 -122852785 + L1PA7 LINE L1 5145 6154 0 1596 197 38 87 chr4 61436662 61437135 -122851527 + MLT1C LTR MaLR 1 450 -17 24 0 0 0 chr4 61437464 61437488 -122851174 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr4 61438670 61438693 -122849969 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr4 61439327 61439357 -122849305 + AT_rich Low_complexity Low_complexity 1 30 0 321 321 44 25 chr4 61439540 61439699 -122848963 - L2 LINE L2 -4 3309 3148 1635 145 20 75 chr4 61439700 61439851 -122848811 - MER44D DNA MER2_type -1882 609 451 1991 154 82 30 chr4 61439851 61440254 -122848408 - MSTA LTR MaLR -4 424 1 1635 145 20 75 chr4 61440254 61440460 -122848202 - MER44D DNA MER2_type -2040 451 2 790 317 59 22 chr4 61440480 61440980 -122847682 - L2 LINE L2 -177 3136 2624 448 305 175 37 chr4 61440985 61441104 -122847558 + L2 LINE L2 2911 3012 -301 3428 34 2 0 chr4 61441104 61441516 -122847146 + L1PA4 LINE L1 5743 6155 0 448 305 175 37 chr4 61441516 61441750 -122846912 + L2 LINE L2 3012 3313 0 1451 218 72 50 chr4 61441817 61442220 -122846442 + MER31B LTR ERV1 15 426 -40 375 200 0 13 chr4 61442829 61442904 -122845758 - MER31B LTR ERV1 -105 361 288 1613 127 27 4 chr4 61442929 61443188 -122845474 - Tigger2 DNA MER2_type -1 2717 2453 339 217 0 14 chr4 61443256 61443325 -122845337 + L2 LINE L2 3242 3309 -4 198 208 0 0 chr4 61443375 61443423 -122845239 + (TA)n Simple_repeat Simple_repeat 2 49 0 1325 218 31 7 chr4 61443439 61443728 -122844934 - AluJo SINE Alu -16 296 1 1998 120 13 3 chr4 61444331 61444630 -122844032 - AluSg SINE Alu -8 302 1 275 320 24 0 chr4 61445124 61445249 -122843413 + MER41B LTR ERV1 298 425 -210 215 103 26 0 chr4 61445669 61445708 -122842954 + (CAT)n Simple_repeat Simple_repeat 3 42 0 1285 229 3 3 chr4 61446083 61446371 -122842291 - AluJo SINE Alu -2 310 23 2390 74 3 3 chr4 61446845 61447156 -122841506 - AluY SINE Alu 0 311 1 258 339 128 9 chr4 61447921 61448030 -122840632 + L2 LINE L2 3148 3269 -3 1786 143 79 25 chr4 61448517 61448873 -122839789 - THE1C LTR MaLR 0 375 1 9146 146 30 40 chr4 61448873 61450468 -122838194 - THE1C-int LTR MaLR 0 1580 1 1808 143 60 33 chr4 61450468 61450833 -122837829 - THE1C LTR MaLR 0 375 1 186 309 29 15 chr4 61451381 61451449 -122837213 - L2 LINE L2 -16 3297 3229 32 0 0 0 chr4 61451551 61451583 -122837079 + AT_rich Low_complexity Low_complexity 1 32 0 355 44 0 0 chr4 61451583 61451650 -122837012 + L1PA3 LINE L1 6093 6159 0 195 69 0 0 chr4 61451661 61451690 -122836972 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 24 32 0 0 chr4 61451938 61451969 -122836693 + AT_rich Low_complexity Low_complexity 1 31 0 261 57 0 0 chr4 61452203 61452238 -122836424 + (TG)n Simple_repeat Simple_repeat 1 35 0 214 77 0 77 chr4 61452238 61452277 -122836385 + (GA)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr4 61452822 61452844 -122835818 + AT_rich Low_complexity Low_complexity 1 22 0 821 281 29 36 chr4 61453232 61453510 -122835152 - MER93b LTR ERV1 0 373 98 450 183 15 8 chr4 61454022 61454153 -122834509 + CT-rich Low_complexity Low_complexity 1 132 0 210 211 0 0 chr4 61454447 61454485 -122834177 + MIR SINE MIR 112 149 -113 330 301 96 30 chr4 61456427 61456593 -122832069 - MIR3 SINE MIR -10 198 22 300 296 9 43 chr4 61457642 61457757 -122830905 + L1MC4 LINE L1 6590 6700 -1342 26 88 0 0 chr4 61458434 61458502 -122830160 + AT_rich Low_complexity Low_complexity 1 68 0 2830 207 113 29 chr4 61458524 61458821 -122829841 - L1MD1 LINE L1 -100 6536 6265 1524 223 22 16 chr4 61458821 61459184 -122829478 + MLT1A1 LTR MaLR 1 365 0 2830 207 113 29 chr4 61459184 61459877 -122828785 - L1MD1 LINE L1 -371 6265 5472 1884 160 22 31 chr4 61459901 61460519 -122828143 - L1P4 LINE L1 -649 5514 4915 925 192 71 18 chr4 61460521 61460745 -122827917 + Tigger2 DNA MER2_type 2483 2718 0 3690 273 64 48 chr4 61460755 61460797 -122827865 - L1MD1 LINE L1 -1998 4542 4502 1542 169 49 75 chr4 61460797 61461182 -122827480 + THE1C LTR MaLR 1 375 0 3690 273 64 48 chr4 61461182 61462038 -122826624 - L1MD1 LINE L1 -2038 4502 3661 324 0 0 0 chr4 61462038 61462074 -122826588 + (TG)n Simple_repeat Simple_repeat 2 37 0 3690 273 64 48 chr4 61462074 61462283 -122826379 - L1MD1 LINE L1 -2879 3661 3457 557 173 27 0 chr4 61462283 61462393 -122826269 + L1PA16 LINE L1 6049 6161 -5 3690 273 64 48 chr4 61462393 61463134 -122825528 - L1MD1 LINE L1 -3083 3457 2662 5481 175 80 16 chr4 61463153 61464293 -122824369 + Tigger3b DNA MER2_type 3 1215 -16 2900 79 0 35 chr4 61464293 61464650 -122824012 - L1PA8 LINE L1 0 6172 5831 2443 83 0 3 chr4 61464650 61464962 -122823700 - AluY SINE Alu 0 311 1 2900 79 0 35 chr4 61464962 61465035 -122823627 - L1PA8 LINE L1 -341 5831 5757 992 77 26 6 chr4 61465035 61465198 -122823464 + L1PA8 LINE L1 5600 5768 -388 * 2171 277 20 76 chr4 61465193 61465481 -122823181 - L1MD1 LINE L1 -3890 2650 2347 1439 258 14 14 chr4 61465481 61465846 -122822816 - MLT1A1 LTR MaLR 0 365 1 2171 277 20 76 chr4 61465846 61466460 -122822202 - L1MD1 LINE L1 -4193 2347 1799 2927 249 82 39 chr4 61466468 61467498 -122821164 - L1MD1 LINE L1 -4979 1561 487 310 164 0 0 chr4 61467518 61467573 -122821089 - MLT2B1 LTR ERVL -2 518 464 429 197 13 0 chr4 61467603 61467679 -122820983 - MER8 DNA MER2_type 0 239 163 845 227 6 0 chr4 61467721 61467884 -122820778 - MER8 DNA MER2_type -75 164 1 1070 226 151 56 chr4 61467889 61468266 -122820396 - MLT2B1 LTR ERVL -106 414 2 1597 209 47 6 chr4 61468328 61468691 -122819971 - L1MD1 LINE L1 -6148 392 15 22 35 0 0 chr4 61469573 61469602 -122819060 + AT_rich Low_complexity Low_complexity 1 29 0 2194 88 0 3 chr4 61470305 61470633 -122818029 + AluY SINE Alu 1 327 0 2026 125 4 7 chr4 61470770 61471051 -122817611 + AluSq SINE Alu 1 280 -33 277 250 167 0 chr4 61471075 61471159 -122817503 + MIR SINE MIR 157 254 -8 240 313 17 43 chr4 61471255 61471370 -122817292 - MIR SINE MIR -62 146 35 202 300 29 0 chr4 61471501 61471571 -122817091 - MIR3 SINE MIR -50 158 87 1369 245 55 22 chr4 61471700 61472691 -122815971 + L1MA9 LINE L1 5070 6274 -38 24 0 0 0 chr4 61472691 61472715 -122815947 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr4 61473072 61473095 -122815567 + AT_rich Low_complexity Low_complexity 1 23 0 1352 207 52 0 chr4 61473317 61473627 -122815035 + AluJb SINE Alu 1 324 0 1979 162 0 0 chr4 61473852 61474155 -122814507 - AluSx SINE Alu -9 303 1 575 317 168 20 chr4 61474648 61474951 -122813711 + LTR16C LTR ERVL 134 481 -10 18100 39 0 0 chr4 61474985 61477976 -122810686 + L1PA4 LINE L1 3165 6155 0 666 291 21 42 chr4 61479449 61479738 -122808924 + HERVL LTR ERVL 1979 2261 -3393 250 272 161 67 chr4 61480558 61480812 -122807850 + MLT1L LTR MaLR 1 278 -337 324 302 166 19 chr4 61481268 61481473 -122807189 - MIR SINE MIR 0 262 28 195 353 115 7 chr4 61482246 61482385 -122806277 - MIR SINE MIR -70 192 39 253 159 0 0 chr4 61482453 61482497 -122806165 - LTR16C LTR ERVL -25 466 423 361 310 0 44 chr4 61483476 61483589 -122805073 + L2 LINE L2 3197 3304 -9 2103 144 0 0 chr4 61483716 61484021 -122804641 - AluSc SINE Alu -4 305 1 306 323 103 15 chr4 61484121 61484316 -122804346 + L2 LINE L2 2211 2422 -892 251 318 62 16 chr4 61484700 61484829 -122803833 - L2 LINE L2 -1 3312 3178 240 231 31 0 chr4 61484850 61484915 -122803747 - MLT1K LTR MaLR -136 452 386 * 396 324 27 14 chr4 61484910 61485058 -122803604 - MLT1K LTR MaLR -367 221 72 243 0 0 0 chr4 61485589 61485616 -122803046 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 293 288 144 0 chr4 61485801 61485919 -122802743 + L2 LINE L2 3178 3312 -1 2204 94 0 29 chr4 61485919 61486226 -122802436 - AluY SINE Alu -13 298 1 216 0 0 0 chr4 61486319 61486343 -122802319 + (T)n Simple_repeat Simple_repeat 1 24 0 396 354 66 0 chr4 61486343 61486524 -122802138 + L2 LINE L2 2570 2762 -552 21 71 0 0 chr4 61487159 61487201 -122801461 + AT_rich Low_complexity Low_complexity 1 42 0 1615 203 0 13 chr4 61487208 61487523 -122801139 + AluJb SINE Alu 1 311 -1 403 85 0 0 chr4 61487904 61487963 -122800699 + L1PB3 LINE L1 6093 6151 -3 2378 118 5 27 chr4 61488201 61488573 -122800089 - THE1B LTR MaLR 0 364 1 1774 161 18 7 chr4 61488578 61488863 -122799799 - AluSx SINE Alu -16 296 9 2249 98 0 0 chr4 61489690 61489977 -122798685 + AluSc SINE Alu 1 287 -22 2739 123 12 2 chr4 61491162 61491586 -122797076 + MSTA LTR MaLR 1 428 0 1778 169 73 52 chr4 61491847 61492349 -122796313 + MER51B LTR ERV1 63 377 0 1851 153 33 55 chr4 61492595 61492994 -122795668 - MLT1B LTR MaLR 0 390 1 1229 164 238 0 chr4 61494680 61494924 -122793738 + AluSx SINE Alu 1 302 0 477 148 0 0 chr4 61494930 61495011 -122793651 + (GAAA)n Simple_repeat Simple_repeat 4 84 0 3298 63 0 0 chr4 61495037 61495489 -122793173 + L1PA7 LINE L1 5710 6161 0 193 40 0 0 chr4 61495464 61495525 -122793137 + (TAA)n Simple_repeat Simple_repeat 3 63 0 1613 171 3 37 chr4 61495971 61496292 -122792370 + AluSx SINE Alu 1 310 -2 209 192 19 39 chr4 61496624 61496676 -122791986 + GA-rich Low_complexity Low_complexity 5 55 0 22 0 0 0 chr4 61496918 61496940 -122791722 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr4 61498383 61498426 -122790236 + AT_rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr4 61499115 61499139 -122789523 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr4 61499203 61499226 -122789436 + AT_rich Low_complexity Low_complexity 1 23 0 1638 108 0 0 chr4 61501095 61501327 -122787335 + AluY SINE Alu 77 308 -3 246 128 0 0 chr4 61501766 61501805 -122786857 + (T)n Simple_repeat Simple_repeat 1 39 0 720 192 50 16 chr4 61502457 61502639 -122786023 + MER53 DNA DNA 1 188 -1 804 226 0 0 chr4 61502933 61503088 -122785574 + AluSg/x SINE Alu 146 300 -12 252 383 25 0 chr4 61503089 61503209 -122785453 - MIR3 SINE MIR -33 175 53 2331 86 0 0 chr4 61503903 61504205 -122784457 + AluSg SINE Alu 1 302 -8 231 271 21 0 chr4 61504207 61504255 -122784407 + L2 LINE L2 2709 2757 -557 315 279 87 19 chr4 61504394 61504498 -122784164 + L2 LINE L2 3199 3309 -4 23 0 0 0 chr4 61504549 61504572 -122784090 + AT_rich Low_complexity Low_complexity 1 23 0 1959 133 0 0 chr4 61504620 61504939 -122783723 - AluSq SINE Alu 0 319 1 2591 134 4 67 chr4 61504962 61505470 -122783192 - L1PB4 LINE L1 -2 6154 5679 1719 232 16 16 chr4 61505732 61506172 -122782490 - L1 LINE L1 -1535 4611 4172 * 3501 215 42 20 chr4 61506167 61507780 -122780882 + L1MB3 LINE L1 4529 6175 -8 420 261 50 0 chr4 61507800 61507919 -122780743 - L1MC/D LINE L1 -2095 5713 5589 207 69 0 0 chr4 61509162 61509191 -122779471 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 2193 150 28 19 chr4 61509613 61509972 -122778690 - THE1B LTR MaLR 0 364 3 11513 96 4 4 chr4 61509974 61511505 -122777157 - THE1B-int LTR MaLR 0 1580 47 1765 138 0 14 chr4 61511505 61511781 -122776881 - AluSc SINE Alu -2 307 36 11513 96 4 4 chr4 61511781 61511829 -122776833 - THE1B-int LTR MaLR -1532 48 1 2122 166 46 3 chr4 61511829 61512178 -122776484 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr4 61512233 61512254 -122776408 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 61512783 61512806 -122775856 + AT_rich Low_complexity Low_complexity 1 23 0 285 135 0 0 chr4 61514562 61514614 -122774048 + (TCC)n Simple_repeat Simple_repeat 3 54 0 1375 125 8 42 chr4 61565369 61565546 -122723116 - L1MB3 LINE L1 -42 6141 5973 1565 183 30 14 chr4 61565546 61565841 -122722821 - AluJo SINE Alu -12 300 1 1375 125 8 42 chr4 61565841 61565903 -122722759 - L1MB3 LINE L1 -210 5973 5910 544 213 71 16 chr4 61565903 61566030 -122722632 - MER34 LTR ERV1 0 542 409 242 214 0 0 chr4 61566066 61566108 -122722554 - MER34 LTR ERV1 -131 411 370 1540 166 181 17 chr4 61566188 61566591 -122722071 - LTR54B LTR ERV1 -22 476 8 398 287 86 29 chr4 61566766 61566940 -122721722 - L1MCa LINE L1 -4990 1436 1253 1346 246 4 4 chr4 61567174 61567454 -122721208 - MLT1A1 LTR MaLR 0 365 86 494 337 163 28 chr4 61568266 61568985 -122719677 - L2 LINE L2 -458 2856 2041 25 51 0 0 chr4 61569160 61569199 -122719463 + AT_rich Low_complexity Low_complexity 1 39 0 762 134 71 0 chr4 61569203 61569315 -122719347 - FLAM_C SINE Alu -10 123 4 486 92 0 31 chr4 61569822 61569887 -122718775 - FLAM SINE Alu -16 127 65 1647 110 98 4 chr4 61569992 61570238 -122718424 - AluSg SINE Alu -38 272 4 296 207 17 0 chr4 61570477 61570535 -122718127 - Tigger7 DNA MER2_type -37 2450 2392 190 244 0 0 chr4 61570969 61571010 -122717652 - MIR SINE MIR -38 224 184 2141 103 17 10 chr4 61572014 61572314 -122716348 + AluSq SINE Alu 1 302 -11 390 42 0 0 chr4 61572455 61572503 -122716159 + (CA)n Simple_repeat Simple_repeat 2 49 0 226 167 83 0 chr4 61572690 61572738 -122715924 + MER117 DNA MER1_type 10 61 -136 758 263 117 12 chr4 61573320 61573567 -122715095 + L1MC4a LINE L1 5453 5725 -2083 1661 221 123 9 chr4 61573579 61573998 -122714664 - MLT1D LTR MaLR -6 499 24 2276 108 0 10 chr4 61573998 61574303 -122714359 - AluY SINE Alu -9 302 1 1661 221 123 9 chr4 61574303 61574331 -122714331 - MLT1D LTR MaLR -481 24 1 565 245 64 46 chr4 61574331 61574617 -122714045 + L1MC4a LINE L1 5717 5997 -167 429 223 25 8 chr4 61574996 61575117 -122713545 + L1ME3A LINE L1 6037 6159 -11 769 187 7 14 chr4 61575237 61575401 -122713261 + FLAM_C SINE Alu 6 168 0 198 0 0 0 chr4 61575555 61575577 -122713085 + (A)n Simple_repeat Simple_repeat 1 22 0 265 285 8 0 chr4 61575613 61575736 -122712926 + L1M4 LINE L1 3094 3217 -2929 315 271 172 33 chr4 61576218 61576340 -122712322 + MIR SINE MIR 18 156 -106 722 183 144 44 chr4 61576450 61576675 -122711987 - MLT1J2 LTR MaLR -199 247 2 246 172 31 78 chr4 61576715 61576779 -122711883 + MIR SINE MIR 92 152 -56 440 198 184 108 chr4 61576780 61576992 -122711670 - MIR SINE MIR -16 246 19 2166 117 7 7 chr4 61576992 61577301 -122711361 - AluSx SINE Alu -3 309 1 2110 220 104 48 chr4 61577302 61578058 -122710604 - L1MC5 LINE L1 -201 7760 6962 240 35 0 0 chr4 61578164 61578193 -122710469 + (TGG)n Simple_repeat Simple_repeat 3 31 0 933 94 0 0 chr4 61578293 61578431 -122710231 + (TGG)n Simple_repeat Simple_repeat 3 140 0 443 267 117 31 chr4 61578471 61578775 -122709887 - L2 LINE L2 -215 3057 2722 229 196 0 0 chr4 61578902 61578948 -122709714 + (CA)n Simple_repeat Simple_repeat 2 47 0 654 222 132 24 chr4 61579129 61579341 -122709321 - MIR SINE MIR -11 251 17 1457 258 131 2 chr4 61579694 61580105 -122708557 + MLT1F LTR MaLR 1 464 -78 278 152 91 131 chr4 61580106 61580205 -122708457 - MLT1E LTR MaLR 0 593 499 3533 94 4 0 chr4 61580273 61580730 -122707932 - L1PB1 LINE L1 -1 6150 5692 2063 138 10 0 chr4 61580736 61581040 -122707622 + AluSp SINE Alu 1 307 -6 1128 226 124 99 chr4 61581043 61581407 -122707255 - MLT1E LTR MaLR -63 530 152 288 0 0 0 chr4 61581407 61581439 -122707223 + (CA)n Simple_repeat Simple_repeat 1 32 0 1128 226 124 99 chr4 61581439 61581516 -122707146 - MLT1E LTR MaLR -441 152 78 392 255 11 11 chr4 61581544 61581638 -122707024 - MLT1E LTR MaLR -560 94 1 376 135 14 40 chr4 61581638 61581711 -122706951 + MLT1F LTR MaLR 494 564 -3 251 118 0 59 chr4 61581848 61581899 -122706763 + L1MB4 LINE L1 6132 6179 -1 355 298 89 0 chr4 61581941 61582065 -122706597 - MIR SINE MIR -48 214 80 2193 117 0 0 chr4 61582464 61582754 -122705908 - AluSx SINE Alu -17 295 6 482 99 0 42 chr4 61583129 61583200 -122705462 - FRAM/FAM SINE Alu -98 87 20 275 273 91 7 chr4 61583512 61583666 -122704996 + L1 LINE L1 3414 3580 -2566 658 113 177 24 chr4 61583701 61583825 -122704837 - AluJb SINE Alu -14 298 156 2230 84 0 24 chr4 61583834 61584130 -122704532 - AluY SINE Alu -22 289 1 226 216 111 33 chr4 61584246 61584399 -122704263 - L1 LINE L1 -2566 3580 3416 1127 183 14 14 chr4 61584593 61584834 -122703828 + AluSq SINE Alu 80 313 0 25 51 0 0 chr4 61584957 61584996 -122703666 + AT_rich Low_complexity Low_complexity 1 39 0 587 182 0 0 chr4 61584996 61585084 -122703578 - FLAM_A SINE Alu -24 118 31 591 270 214 57 chr4 61586290 61586380 -122702282 - L2 LINE L2 -49 3223 3148 1388 53 0 24 chr4 61586380 61586549 -122702113 - L1PA3 LINE L1 -1 6154 5990 1878 122 7 4 chr4 61586549 61586819 -122701843 - AluSx SINE Alu -41 271 1 591 270 214 57 chr4 61586819 61587480 -122701182 - L2 LINE L2 -123 3149 2366 541 181 78 0 chr4 61587559 61587675 -122700987 + FLAM_C SINE Alu 18 142 -1 1105 120 13 0 chr4 61587691 61587849 -122700813 + AluSx SINE Alu 1 160 -152 2068 112 7 7 chr4 61587993 61588317 -122700345 + AluSc SINE Alu 1 309 0 216 0 0 0 chr4 61588366 61588390 -122700272 + (TA)n Simple_repeat Simple_repeat 1 24 0 1591 161 0 89 chr4 61589449 61589600 -122699062 + AluJo SINE Alu 1 90 -222 2110 121 7 0 chr4 61589600 61589889 -122698773 + AluSp SINE Alu 1 291 -22 1591 161 0 89 chr4 61589889 61590094 -122698568 + AluJo SINE Alu 90 312 0 300 266 118 100 chr4 61590264 61590709 -122697953 + L2 LINE L2 2782 3271 -1 1286 334 3 66 chr4 61590778 61590949 -122697713 - AluSc SINE Alu -9 300 157 189 0 0 0 chr4 61590949 61590970 -122697692 + (TTTC)n Simple_repeat Simple_repeat 1 21 0 1286 334 3 66 chr4 61590970 61591118 -122697544 - AluSc SINE Alu -152 157 1 217 229 0 0 chr4 61592279 61592327 -122696335 + (CCCCAG)n Simple_repeat Simple_repeat 5 52 0 353 294 108 84 chr4 61592334 61592963 -122695699 - L1M2 LINE L1 -5450 1399 756 2379 74 3 0 chr4 61595418 61595716 -122692946 + AluY SINE Alu 1 299 -12 489 315 27 36 chr4 61596795 61597014 -122691648 + MIR SINE MIR 40 256 -6 2008 150 3 0 chr4 61597708 61597995 -122690667 - AluSx SINE Alu -24 288 1 30 0 0 0 chr4 61598274 61598304 -122690358 + AT_rich Low_complexity Low_complexity 1 30 0 1242 165 5 24 chr4 61598349 61598561 -122690101 + AluJo SINE Alu 85 292 -20 997 157 17 102 chr4 61599631 61599867 -122688795 - MER20 DNA MER1_type 0 219 4 337 186 51 0 chr4 61599913 61599972 -122688690 + L2 LINE L2 3252 3313 0 1552 201 0 36 chr4 61600383 61600545 -122688117 - AluJo SINE Alu -19 293 127 2137 128 0 0 chr4 61600545 61600843 -122687819 - AluSq SINE Alu -15 298 1 1992 124 7 29 chr4 61600846 61601152 -122687510 - AluSx SINE Alu -13 299 1 1552 201 0 36 chr4 61601152 61601289 -122687373 - AluJo SINE Alu -187 125 1 775 140 37 104 chr4 61601366 61601530 -122687132 - FRAM SINE Alu -24 152 1 2012 150 0 3 chr4 61601540 61601840 -122686822 - AluSx SINE Alu -13 299 1 1906 102 11 8 chr4 61601920 61602186 -122686476 - AluSq SINE Alu -46 267 1 21 0 0 0 chr4 61602270 61602291 -122686371 + AT_rich Low_complexity Low_complexity 1 21 0 203 280 212 10 chr4 61602292 61602485 -122686177 - L2 LINE L2 -1419 1895 1664 7297 143 37 11 chr4 61602787 61603687 -122684975 - Tigger1 DNA MER2_type 0 2418 1473 1930 150 3 0 chr4 61603687 61603981 -122684681 - AluSx SINE Alu -17 295 1 7297 143 37 11 chr4 61603981 61604387 -122684275 - Tigger1 DNA MER2_type -945 1473 1079 459 0 0 0 chr4 61604389 61604440 -122684222 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 641 157 9 9 chr4 61604446 61604554 -122684108 - AluJb SINE Alu -196 116 9 3189 155 54 2 chr4 61604559 61605154 -122683508 - Tigger1 DNA MER2_type -1354 1064 439 5814 201 35 29 chr4 61605154 61606598 -122682064 + Cheshire DNA MER1_type 208 1659 -761 22 70 0 0 chr4 61606700 61606743 -122681919 + AT_rich Low_complexity Low_complexity 1 43 0 1829 314 65 47 chr4 61606876 61607014 -122681648 - Charlie1 DNA MER1_type -447 2314 2180 2003 132 0 0 chr4 61607014 61607294 -122681368 + AluSg1 SINE Alu 1 280 -29 1829 314 65 47 chr4 61607294 61607416 -122681246 - Charlie1 DNA MER1_type -581 2180 2062 1793 137 79 0 chr4 61607416 61607693 -122680969 - AluSx SINE Alu -3 309 11 1829 314 65 47 chr4 61607693 61608287 -122680375 - Charlie1 DNA MER1_type -699 2062 1443 3821 259 96 36 chr4 61608287 61608952 -122679710 - L1MDa LINE L1 -4376 2164 1540 1937 144 4 0 chr4 61608952 61609229 -122679433 - AluSx SINE Alu -34 278 1 3821 259 96 36 chr4 61609229 61609427 -122679235 - L1MDa LINE L1 -5000 1540 1355 2186 124 3 0 chr4 61609427 61609725 -122678937 - AluSx SINE Alu -13 299 1 3821 259 96 36 chr4 61609725 61610886 -122677776 - L1MDa LINE L1 -5185 1355 17 1122 263 54 38 chr4 61610904 61611482 -122677180 - L1MDa LINE L1 -4638 1902 1316 1920 145 14 3 chr4 61611482 61611778 -122676884 - AluSx SINE Alu -11 301 3 270 320 0 0 chr4 61611822 61611919 -122676743 - L1MDa LINE L1 -5903 627 531 1214 245 111 34 chr4 61612022 61613260 -122675402 - L1ME1 LINE L1 -24 6142 4768 583 268 75 55 chr4 61614785 61615170 -122673492 - L1ME3A LINE L1 -108 6062 5670 2222 119 0 19 chr4 61615222 61615532 -122673130 - AluSx SINE Alu -5 307 4 347 276 81 95 chr4 61615650 61615788 -122672874 + MIR SINE MIR 43 178 -84 2309 116 0 0 chr4 61615788 61616099 -122672563 - AluSx SINE Alu 0 312 2 347 276 81 95 chr4 61616099 61616181 -122672481 + MIR SINE MIR 178 260 -2 1136 236 156 70 chr4 61616764 61616995 -122671667 - MLT1E2 LTR MaLR -2 624 414 2154 109 3 22 chr4 61616995 61617308 -122671354 - AluSc SINE Alu -2 307 1 1136 236 156 70 chr4 61617308 61617700 -122670962 - MLT1E2 LTR MaLR -212 414 1 470 296 123 61 chr4 61618227 61618944 -122669718 - L1ME1 LINE L1 -3129 3017 2257 213 139 0 0 chr4 61618958 61619001 -122669661 + (TA)n Simple_repeat Simple_repeat 2 44 0 811 163 34 7 chr4 61619002 61619149 -122669513 - MSTA LTR MaLR -9 417 267 1162 89 6 41 chr4 61619149 61619344 -122669318 + AluSq SINE Alu 134 313 0 1210 180 86 0 chr4 61619350 61619595 -122669067 - MSTA LTR MaLR -154 274 9 366 344 50 32 chr4 61619753 61619971 -122668691 - HAL1 LINE L1 -881 1626 1405 196 195 0 0 chr4 61620082 61620124 -122668538 + MIR SINE MIR 109 146 -62 358 286 32 16 chr4 61620198 61620324 -122668338 - HAL1 LINE L1 -1246 1261 1134 1857 172 0 20 chr4 61620827 61621129 -122667533 - AluJb SINE Alu -16 296 1 25 31 0 0 chr4 61621186 61621218 -122667444 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr4 61622072 61622096 -122666566 + AT_rich Low_complexity Low_complexity 1 24 0 1521 88 5 0 chr4 61622137 61622330 -122666332 - AluY SINE Alu -117 194 1 263 316 0 18 chr4 61624909 61625023 -122663639 + MIR SINE MIR 148 259 -3 613 305 48 15 chr4 61625400 61625693 -122662969 - L2 LINE L2 -296 3017 2714 2936 49 3 0 chr4 61626230 61626600 -122662062 + L1PA4 LINE L1 5782 6152 -3 659 310 83 26 chr4 61628022 61628406 -122660256 + L1M4c LINE L1 937 1342 -5042 329 336 23 15 chr4 61628422 61628684 -122659978 + L1M4c LINE L1 1593 1856 -4528 2143 103 3 29 chr4 61628917 61629258 -122659404 + MER41A LTR ERV1 223 554 0 993 258 98 22 chr4 61629260 61629445 -122659217 + L1ME3A LINE L1 5505 5675 -495 2097 121 13 3 chr4 61629445 61629743 -122658919 + AluSq SINE Alu 1 301 -12 993 258 98 22 chr4 61629743 61630006 -122658656 + L1ME3A LINE L1 5675 5987 -183 928 173 7 0 chr4 61630026 61630176 -122658486 + AluJb SINE Alu 136 286 -26 483 92 0 0 chr4 61630194 61630259 -122658403 + AluS SINE Alu 1 65 -248 331 234 195 39 chr4 61630263 61630417 -122658245 + L1ME3A LINE L1 5985 6162 -8 326 270 86 66 chr4 61630457 61630609 -122658053 + L1M4c LINE L1 1830 1984 -4579 1306 192 57 24 chr4 61630683 61631017 -122657645 + L1MD2 LINE L1 5841 6185 -174 626 181 0 0 chr4 61631018 61631134 -122657528 + L1MD2 LINE L1 6234 6349 -10 990 224 56 48 chr4 61631601 61631869 -122656793 + AluJo SINE Alu 1 270 -42 271 254 121 0 chr4 61631971 61632136 -122656526 + L1M4c LINE L1 2618 2802 -3580 1336 164 9 5 chr4 61632481 61632695 -122655967 - AluJb SINE Alu -13 299 85 768 104 0 0 chr4 61632755 61632861 -122655801 + AluSc SINE Alu 3 108 -201 380 169 12 24 chr4 61632961 61633044 -122655618 + FLAM SINE Alu 50 131 -2 209 374 26 0 chr4 61633188 61633303 -122655359 + L2 LINE L2 2777 2894 -420 293 206 22 54 chr4 61634221 61634313 -122654349 - L2 LINE L2 -86 3227 3139 409 257 55 58 chr4 61634461 61634772 -122653890 + L1M4c LINE L1 3661 3970 -2412 1706 193 10 0 chr4 61634789 61635084 -122653578 + AluJb SINE Alu 1 298 -14 275 271 65 0 chr4 61635143 61635250 -122653412 + L1MC4 LINE L1 51 164 -5906 1182 239 119 38 chr4 61635269 61635976 -122652686 + L1MC4 LINE L1 2652 3415 -2665 1092 227 143 11 chr4 61635979 61636428 -122652234 + L1MC4 LINE L1 5486 5993 -1983 336 257 118 7 chr4 61636447 61636583 -122652079 + L1M4c LINE L1 4734 4884 -1498 2133 122 0 0 chr4 61638086 61638382 -122650280 + AluSx SINE Alu 1 296 -16 898 190 146 27 chr4 61638886 61638934 -122649728 + LTR37A LTR ERV1 14 55 -371 1505 192 14 17 chr4 61638934 61639221 -122649441 - AluJb SINE Alu -26 286 1 898 190 146 27 chr4 61639221 61639541 -122649121 + LTR37A LTR ERV1 55 426 0 230 262 39 39 chr4 61640063 61640166 -122648496 + MER106B DNA MER1_type 53 155 -904 314 287 83 0 chr4 61640300 61640408 -122648254 - L2 LINE L2 0 3272 3156 252 0 0 0 chr4 61640475 61640503 -122648159 + (TA)n Simple_repeat Simple_repeat 2 29 0 1032 145 7 0 chr4 61641141 61641506 -122647156 + (GAATG)n Satellite Satellite 1 367 0 1008 129 0 0 chr4 61641522 61641692 -122646970 + (GAATG)n Satellite Satellite 5 174 0 348 159 48 0 chr4 61641703 61641766 -122646896 + AluJ/FRAM SINE Alu 225 290 -12 971 134 0 2 chr4 61641789 61642251 -122646411 + (GAATG)n Satellite Satellite 1 460 0 822 136 0 0 chr4 61642264 61642433 -122646229 + (GAATG)n Satellite Satellite 2 170 0 964 147 2 2 chr4 61642465 61642882 -122645780 + (GAATG)n Satellite Satellite 1 417 0 1254 117 0 0 chr4 61642895 61643389 -122645273 + (GAATG)n Satellite Satellite 1 494 0 885 136 0 0 chr4 61643419 61643596 -122645066 + (GAATG)n Satellite Satellite 4 180 0 1068 124 0 8 chr4 61643625 61644144 -122644518 + (GAATG)n Satellite Satellite 1 693 0 972 148 1 5 chr4 61644164 61645008 -122643654 + (GAATG)n Satellite Satellite 1 841 0 859 150 6 3 chr4 61645046 61645404 -122643258 + (GAATG)n Satellite Satellite 1 359 0 1110 137 1 8 chr4 61645436 61646029 -122642633 + (GAATG)n Satellite Satellite 1 767 0 1077 106 0 0 chr4 61646029 61646209 -122642453 + (GAATG)n Satellite Satellite 1 180 0 1038 112 0 0 chr4 61646270 61646448 -122642214 + (GAATG)n Satellite Satellite 2 179 0 1072 90 6 6 chr4 61646495 61646672 -122641990 + (GAATG)n Satellite Satellite 3 179 0 876 133 0 0 chr4 61646824 61647004 -122641658 + (GAATG)n Simple_repeat Simple_repeat 1 180 0 870 140 0 0 chr4 61647284 61647463 -122641199 + (GAATG)n Satellite Satellite 2 180 0 819 171 0 0 chr4 61647491 61647843 -122640819 + (GAATG)n Satellite Satellite 1 352 0 695 148 0 27 chr4 61647854 61648037 -122640625 + (GAATG)n Satellite Satellite 3 180 0 1095 141 1 2 chr4 61648049 61648784 -122639878 + (GAATG)n Satellite Satellite 1 913 0 969 128 0 0 chr4 61648784 61648964 -122639698 + (GAATG)n Satellite Satellite 1 180 0 927 129 0 0 chr4 61649554 61649732 -122638930 + (GAATG)n Simple_repeat Simple_repeat 3 180 0 907 114 6 6 chr4 61650014 61650190 -122638472 + (GAATG)n Satellite Satellite 4 179 0 861 136 0 0 chr4 61650249 61650426 -122638236 + (GAATG)n Satellite Satellite 3 179 0 792 156 0 0 chr4 61650454 61650634 -122638028 + (GAATG)n Satellite Satellite 1 180 0 855 134 0 0 chr4 61650650 61650829 -122637833 + (GAATG)n Satellite Satellite 1 179 0 870 128 0 0 chr4 61650884 61651056 -122637606 + (GAATG)n Satellite Satellite 4 175 0 717 147 0 0 chr4 61651090 61651246 -122637416 + (GAATG)n Satellite Satellite 4 159 0 24 32 0 0 chr4 61651758 61651789 -122636873 + AT_rich Low_complexity Low_complexity 1 31 0 311 298 105 0 chr4 61652674 61652788 -122635874 + L2 LINE L2 1821 1946 -1368 220 430 35 0 chr4 61652910 61653052 -122635610 + L2 LINE L2 2796 2942 -372 393 229 69 87 chr4 61653268 61653486 -122635176 - MER58C DNA MER1_type 0 215 2 1903 150 3 16 chr4 61654521 61654827 -122633835 + AluSx SINE Alu 11 312 0 1195 218 4 59 chr4 61656688 61656959 -122631703 + AluJo SINE Alu 1 256 -56 26 50 0 0 chr4 61658098 61658138 -122630524 + AT_rich Low_complexity Low_complexity 1 40 0 314 139 14 0 chr4 61659780 61659852 -122628810 + (CA)n Simple_repeat Simple_repeat 1 73 0 373 324 15 7 chr4 61659980 61660116 -122628546 - L1MC4 LINE L1 -1343 6699 6563 336 314 102 44 chr4 61661069 61661384 -122627278 + L1MC4a LINE L1 5623 5955 -1853 226 369 54 0 chr4 61661729 61661840 -122626822 - MIR3 SINE MIR -7 201 85 398 373 16 40 chr4 61661875 61662127 -122626535 - MIR SINE MIR 0 262 17 22 0 0 0 chr4 61662441 61662463 -122626199 + AT_rich Low_complexity Low_complexity 1 22 0 1388 203 31 0 chr4 61662463 61662719 -122625943 - AluJo SINE Alu -38 274 11 428 86 0 0 chr4 61662841 61662899 -122625763 + AluS SINE Alu 18 75 -237 22 0 0 0 chr4 61663544 61663566 -122625096 + AT_rich Low_complexity Low_complexity 1 22 0 543 318 47 14 chr4 61665725 61665985 -122622677 - HERVL LTR ERVL -2952 2533 2267 498 323 87 35 chr4 61667297 61667644 -122621018 + L2 LINE L2 2451 2815 -499 22 35 0 0 chr4 61668070 61668099 -122620563 + AT_rich Low_complexity Low_complexity 1 29 0 245 237 22 22 chr4 61668389 61668528 -122620134 + GA-rich Low_complexity Low_complexity 1 139 0 1554 227 78 36 chr4 61668552 61669265 -122619397 - L1M4 LINE L1 -4994 1548 820 359 300 33 46 chr4 61669445 61669598 -122619064 - L1M4 LINE L1 -5717 929 553 370 270 102 25 chr4 61669892 61670088 -122618574 - L1M4 LINE L1 -6324 218 8 1941 196 106 12 chr4 61670142 61670566 -122618096 - MLT1C LTR MaLR 0 467 4 541 244 120 35 chr4 61670569 61670918 -122617744 - L1MEc LINE L1 -3688 2458 2112 1614 216 51 2 chr4 61671920 61672313 -122616349 + MER54A LTR ERVL 1 412 -489 2178 118 74 15 chr4 61672322 61672660 -122616002 + THE1B LTR MaLR 7 364 0 1327 249 49 10 chr4 61672698 61673103 -122615559 + MER54A LTR ERVL 472 892 -9 26 0 0 0 chr4 61673915 61673941 -122614721 + AT_rich Low_complexity Low_complexity 1 26 0 296 254 30 22 chr4 61674072 61674206 -122614456 + (TA)n Simple_repeat Simple_repeat 1 135 0 25 31 0 0 chr4 61674357 61674389 -122614273 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 61674396 61674417 -122614245 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr4 61674777 61674800 -122613862 + (T)n Simple_repeat Simple_repeat 1 23 0 754 216 7 0 chr4 61675170 61675318 -122613344 - AluJo SINE Alu -106 206 58 294 227 15 0 chr4 61675829 61675895 -122612767 + MIR3 SINE MIR 95 161 -47 885 110 8 0 chr4 61677384 61677511 -122611151 - AluYb8 SINE Alu -179 139 12 266 259 126 34 chr4 61677608 61677868 -122610794 + L1ME3A LINE L1 5875 6160 -10 1417 206 37 0 chr4 61678549 61678845 -122609817 - AluJb SINE Alu 0 306 1 214 195 52 0 chr4 61678875 61678952 -122609710 + (TA)n Simple_repeat Simple_repeat 1 81 0 25 65 0 0 chr4 61682216 61682262 -122606400 + AT_rich Low_complexity Low_complexity 1 46 0 215 192 39 0 chr4 61682556 61682608 -122606054 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 3180 196 24 5 chr4 61682790 61683460 -122605202 + L1MB3 LINE L1 5501 6183 0 227 301 49 93 chr4 61684906 61685152 -122603510 - L3 LINE CR1 -583 994 760 374 367 55 0 chr4 61685173 61685459 -122603203 + L2 LINE L2 2748 3047 -266 2344 221 48 7 chr4 61685520 61686118 -122602544 - L1MB7 LINE L1 0 6184 5562 4306 262 66 18 chr4 61686134 61687928 -122600734 - L1MB7 LINE L1 -729 5445 3569 332 214 90 0 chr4 61687962 61688051 -122600611 - L1MB7 LINE L1 -2991 3155 3059 626 263 95 34 chr4 61688106 61688384 -122600278 + MER77 LTR ERV1 323 673 -6 1537 221 21 0 chr4 61689004 61689344 -122599318 - MER7A DNA MER2_type 0 346 2 28 0 0 0 chr4 61689396 61689424 -122599238 + AT_rich Low_complexity Low_complexity 1 28 0 216 358 0 0 chr4 61689618 61689699 -122598963 + (TG)n Simple_repeat Simple_repeat 2 82 0 21 36 0 0 chr4 61690614 61690642 -122598020 + AT_rich Low_complexity Low_complexity 1 28 0 226 218 0 73 chr4 61692202 61692257 -122596405 + LTR16C LTR ERVL 83 133 -358 246 336 114 20 chr4 61692304 61692453 -122596209 + LTR16C LTR ERVL 237 399 -92 21 36 0 0 chr4 61692615 61692643 -122596019 + AT_rich Low_complexity Low_complexity 1 28 0 296 316 101 33 chr4 61694561 61695336 -122593326 + L1MEd LINE L1 530 1398 -4867 21 57 0 0 chr4 61695370 61695405 -122593257 + AT_rich Low_complexity Low_complexity 1 35 0 2239 93 0 13 chr4 61695762 61696064 -122592598 - AluSg SINE Alu -12 298 1 29 60 0 0 chr4 61696188 61696238 -122592424 + AT_rich Low_complexity Low_complexity 1 50 0 197 197 16 0 chr4 61696568 61696629 -122592033 + (CA)n Simple_repeat Simple_repeat 2 63 0 352 336 106 23 chr4 61696631 61696979 -122591683 + L1MEd LINE L1 2450 2826 -3303 2130 125 0 3 chr4 61697360 61697665 -122590997 + AluSx SINE Alu 3 306 -6 28 29 0 0 chr4 61698928 61698963 -122589699 + AT_rich Low_complexity Low_complexity 1 35 0 24 85 0 0 chr4 61699051 61699110 -122589552 + AT_rich Low_complexity Low_complexity 1 59 0 22 56 0 0 chr4 61699582 61699618 -122589044 + AT_rich Low_complexity Low_complexity 1 36 0 1629 149 176 19 chr4 61699844 61700219 -122588443 - Tigger2a DNA MER2_type 0 434 1 670 49 107 36 chr4 61700312 61700626 -122588036 + (CATTT)n Simple_repeat Simple_repeat 1 336 0 562 78 141 0 chr4 61700662 61700938 -122587724 + (CATTT)n Simple_repeat Simple_repeat 1 314 0 2089 110 0 0 chr4 61701406 61701721 -122586941 - AluY SINE Alu 0 315 1 484 291 25 20 chr4 61701907 61702103 -122586559 - L1M4c LINE L1 -4670 1714 1518 227 264 0 0 chr4 61702144 61702197 -122586465 + L1MCc LINE L1 835 887 -5536 415 273 134 27 chr4 61702219 61702406 -122586256 + L1MCc LINE L1 1768 1974 -4967 894 222 66 40 chr4 61702433 61702811 -122585851 + L1MCc LINE L1 3045 3432 -3509 270 231 10 19 chr4 61702914 61703018 -122585644 + CT-rich Low_complexity Low_complexity 3 105 0 589 219 0 22 chr4 61703037 61703220 -122585442 + CT-rich Low_complexity Low_complexity 2 180 0 618 199 0 38 chr4 61703271 61703457 -122585205 + CT-rich Low_complexity Low_complexity 2 180 0 1257 222 48 83 chr4 61703573 61703846 -122584816 + MLT1D LTR MaLR 5 253 -252 2144 110 7 0 chr4 61703846 61704138 -122584524 + AluY SINE Alu 3 296 -15 1257 222 48 83 chr4 61704138 61704383 -122584279 + MLT1D LTR MaLR 253 505 0 1332 246 0 7 chr4 61705374 61705654 -122583008 + AluJb SINE Alu 11 288 -24 22 0 0 0 chr4 61705654 61705676 -122582986 + AT_rich Low_complexity Low_complexity 1 22 0 1592 216 51 2 chr4 61706847 61707240 -122581422 + MER54A LTR ERVL 1 412 -489 2136 124 74 15 chr4 61707249 61707587 -122581075 + THE1B LTR MaLR 7 364 0 1289 253 77 10 chr4 61707624 61708028 -122580634 + MER54A LTR ERVL 471 901 0 26 0 0 0 chr4 61708832 61708858 -122579804 + AT_rich Low_complexity Low_complexity 1 26 0 296 284 34 0 chr4 61708973 61709121 -122579541 + (TA)n Simple_repeat Simple_repeat 1 153 0 24 77 0 0 chr4 61709310 61709362 -122579300 + AT_rich Low_complexity Low_complexity 1 52 0 1110 258 53 72 chr4 61710620 61710862 -122577800 - MLT1D LTR MaLR 0 505 260 2168 108 7 3 chr4 61710862 61711159 -122577503 - AluSg SINE Alu -10 300 3 1110 258 53 72 chr4 61711159 61711427 -122577235 - MLT1D LTR MaLR -245 260 5 21 0 0 0 chr4 61711485 61711506 -122577156 + AT_rich Low_complexity Low_complexity 1 21 0 475 185 34 0 chr4 61711520 61711639 -122577023 + GA-rich Low_complexity Low_complexity 4 126 0 964 116 6 12 chr4 61711640 61711813 -122576849 + (GAAA)n Simple_repeat Simple_repeat 4 175 0 1163 239 163 38 chr4 61712070 61712517 -122576145 - L1MB5 LINE L1 -10 6164 5662 404 312 23 41 chr4 61712518 61712784 -122575878 + L1M4c LINE L1 1518 1778 -4606 2205 99 0 0 chr4 61712895 61713178 -122575484 + AluY SINE Alu 1 283 -28 543 269 102 23 chr4 61713604 61713979 -122574683 + L1M4c LINE L1 2336 2693 -3689 1959 196 106 12 chr4 61713981 61714405 -122574257 + MLT1C LTR MaLR 4 467 0 254 286 124 25 chr4 61714492 61714653 -122574009 + L1M4 LINE L1 42 218 -6324 312 323 16 0 chr4 61714973 61715100 -122573562 + L1M4 LINE L1 801 929 -5717 1576 229 85 22 chr4 61715278 61715968 -122572694 + L1M4 LINE L1 820 1530 -5022 386 287 35 7 chr4 61715997 61716140 -122572522 + CT-rich Low_complexity Low_complexity 1 147 0 515 314 121 32 chr4 61716860 61717233 -122571429 - L2 LINE L2 -499 2815 2410 551 279 67 24 chr4 61718500 61718708 -122569954 + HERVL LTR ERVL 2247 2463 -3191 688 177 0 0 chr4 61720394 61720507 -122568155 + FLAM_C SINE Alu 3 115 -28 26 0 0 0 chr4 61720509 61720535 -122568127 + AT_rich Low_complexity Low_complexity 1 26 0 227 250 0 47 chr4 61721028 61721092 -122567570 - MER103 DNA DNA -46 120 60 652 49 127 10 chr4 61721413 61721696 -122566966 + (AAATG)n Simple_repeat Simple_repeat 1 316 0 21 0 0 0 chr4 61721813 61721834 -122566828 + AT_rich Low_complexity Low_complexity 1 21 0 2245 176 101 11 chr4 61721972 61722517 -122566145 + LTR49 LTR ERV1 1 594 -1 1811 167 56 23 chr4 61722703 61723133 -122565529 + LTR56 LTR ERV1 2 445 0 584 228 138 11 chr4 61723273 61723462 -122565200 - MER20 DNA MER1_type -3 216 4 25 31 0 0 chr4 61723714 61723746 -122564916 + AT_rich Low_complexity Low_complexity 1 32 0 25 51 0 0 chr4 61723950 61723989 -122564673 + AT_rich Low_complexity Low_complexity 1 39 0 1547 185 82 55 chr4 61724440 61724472 -122564190 + LTR49 LTR ERV1 1 31 -564 2012 119 7 4 chr4 61724472 61724749 -122563913 - AluSq SINE Alu -22 291 14 1547 185 82 55 chr4 61724749 61725132 -122563530 + LTR49 LTR ERV1 31 427 -168 253 151 14 14 chr4 61725166 61725239 -122563423 + (TA)n Simple_repeat Simple_repeat 1 73 0 28 61 0 0 chr4 61725454 61725503 -122563159 + AT_rich Low_complexity Low_complexity 1 49 0 610 148 20 0 chr4 61726736 61726837 -122561825 + MSTB1 LTR MaLR 1 103 -329 2181 186 107 13 chr4 61727037 61727580 -122561082 + LTR49 LTR ERV1 1 594 -1 1802 181 46 23 chr4 61727764 61728217 -122560445 + LTR56 LTR ERV1 1 437 0 500 231 148 11 chr4 61728335 61728517 -122560145 - MER20 DNA MER1_type -3 216 10 1406 203 83 52 chr4 61729496 61729527 -122559135 + LTR49 LTR ERV1 1 30 -565 1895 137 35 3 chr4 61729527 61729811 -122558851 - AluSq SINE Alu -20 293 1 1406 203 83 52 chr4 61729811 61730223 -122558439 + LTR49 LTR ERV1 30 458 -137 369 140 20 10 chr4 61730223 61730323 -122558339 + (TA)n Simple_repeat Simple_repeat 1 101 0 1109 151 0 6 chr4 61731776 61732119 -122556543 + (CATTC)n Satellite Satellite 2 342 0 345 206 16 0 chr4 61732143 61732206 -122556456 - AluJ/FRAM SINE Alu -14 288 225 929 166 0 3 chr4 61732217 61732519 -122556143 + (CATTC)n Satellite Satellite 1 301 0 240 177 48 0 chr4 61732736 61732798 -122555864 - L1MEc LINE L1 -3821 2394 2330 21 0 0 0 chr4 61732952 61732973 -122555689 + AT_rich Low_complexity Low_complexity 1 21 0 295 323 70 24 chr4 61733193 61733524 -122555138 - L1MEc LINE L1 -4741 1655 1310 204 40 0 0 chr4 61733674 61733699 -122554963 + (TTTTA)n Simple_repeat Simple_repeat 4 28 0 42492 58 3 0 chr4 61733699 61739827 -122548835 - L1PA4 LINE L1 -13 6142 2 724 42 114 27 chr4 61739827 61740147 -122548515 + (CATTT)n Simple_repeat Simple_repeat 1 347 0 2205 256 86 45 chr4 61941001 61941999 -122346663 + L1M4 LINE L1 1062 2100 -4749 330 314 108 35 chr4 61942251 61942828 -122345834 + L1M4 LINE L1 4026 4644 -2204 747 250 6 28 chr4 61942910 61943090 -122345572 + AluJo SINE Alu 5 180 -132 5211 159 24 9 chr4 61943356 61944757 -122343905 - L1MA1 LINE L1 -187 6115 4696 1986 118 0 7 chr4 61945121 61945400 -122343262 - AluSx SINE Alu -35 277 1 455 205 58 20 chr4 61945400 61945550 -122343112 - L1M LINE L1 -768 5378 5242 * 3368 159 39 11 chr4 61945542 61946190 -122342472 + L1MA8 LINE L1 5471 6136 -155 1468 138 5 9 chr4 61946516 61946740 -122341922 + MER4B LTR ERV1 388 610 0 919 205 0 6 chr4 61946802 61946968 -122341694 + AluJo SINE Alu 14 178 -134 33 25 0 0 chr4 61946982 61947022 -122341640 + AT_rich Low_complexity Low_complexity 1 40 0 551 201 24 6 chr4 61947560 61947700 -122340962 - MSTD LTR MaLR -2 394 227 2103 131 10 0 chr4 61948143 61948449 -122340213 - AluSx SINE Alu -3 309 1 21 57 0 0 chr4 61948697 61948732 -122339930 + AT_rich Low_complexity Low_complexity 1 35 0 22 70 0 0 chr4 61948833 61948876 -122339786 + AT_rich Low_complexity Low_complexity 1 43 0 2195 134 28 3 chr4 61949216 61949573 -122339089 + L1PB4 LINE L1 5789 6154 -2 2157 117 0 13 chr4 61949620 61949918 -122338744 + AluSg SINE Alu 1 294 -16 306 280 73 27 chr4 61949964 61950114 -122338548 + L1MB7 LINE L1 5267 5423 -819 1746 163 137 13 chr4 61950168 61950548 -122338114 - MSTA LTR MaLR 0 428 2 4105 163 139 94 chr4 61950762 61952254 -122336408 + pTR5 LTR ERV1 880 2438 0 1071 226 55 52 chr4 61952276 61952639 -122336023 + MLT1A1 LTR MaLR 2 365 0 1014 229 29 36 chr4 61954212 61954347 -122334315 + Charlie1 DNA MER1_type 1499 1633 -1128 2273 102 0 0 chr4 61954347 61954640 -122334022 - AluSx SINE Alu -19 293 1 1014 229 29 36 chr4 61954640 61954779 -122333883 + Charlie1 DNA MER1_type 1633 1771 -990 1485 227 56 11 chr4 61954786 61955249 -122333413 + Charlie1 DNA MER1_type 2252 2735 -26 189 328 0 0 chr4 61955436 61955494 -122333168 - L2 LINE L2 0 3272 3215 988 247 29 8 chr4 61955864 61956103 -122332559 + MLT1D LTR MaLR 262 505 0 2208 94 3 0 chr4 61956161 61956448 -122332214 - AluSq SINE Alu -24 289 2 2006 82 4 0 chr4 61956527 61956783 -122331879 - AluSp SINE Alu -18 295 39 3028 189 36 64 chr4 61957212 61957990 -122330672 + L1MB7 LINE L1 5429 6184 0 287 329 0 0 chr4 61958309 61958394 -122330268 - MIR SINE MIR -126 136 52 492 259 137 33 chr4 61958504 61958716 -122329946 - MIR SINE MIR -27 235 2 307 207 0 49 chr4 61958952 61959034 -122329628 - MER103 DNA DNA -57 109 32 252 287 116 50 chr4 61959785 61959966 -122328696 + L2 LINE L2 3121 3313 0 373 287 88 44 chr4 61960922 61961103 -122327559 - L2 LINE L2 0 3313 3125 288 143 119 103 chr4 61961380 61961506 -122327156 - MER103 DNA DNA -13 153 26 328 324 66 44 chr4 61961715 61961897 -122326765 + MIR SINE MIR 7 192 -70 219 264 0 14 chr4 61962119 61962191 -122326471 + (TA)n Simple_repeat Simple_repeat 2 72 0 607 266 58 0 chr4 61964160 61964314 -122324348 + MER63 DNA MER1_type 1 789 -273 21 0 0 0 chr4 61965028 61965049 -122323613 + AT_rich Low_complexity Low_complexity 1 21 0 190 162 27 0 chr4 61965636 61965673 -122322989 + L2 LINE L2 3272 3309 -4 224 309 183 8 chr4 61966024 61966150 -122322512 + MIR SINE MIR 7 154 -108 599 246 34 50 chr4 61967884 61968063 -122320599 + MIR SINE MIR 15 190 -72 183 80 0 0 chr4 61968112 61968137 -122320525 + (TTA)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr4 61972118 61972139 -122316523 + AT_rich Low_complexity Low_complexity 1 21 0 445 308 105 68 chr4 61972289 61972659 -122316003 - L2 LINE L2 -5 3308 2925 21 0 0 0 chr4 61973698 61973719 -122314943 + AT_rich Low_complexity Low_complexity 1 21 0 2081 170 78 15 chr4 61974594 61974994 -122313668 + MSTB LTR MaLR 2 426 0 21 36 0 0 chr4 61975107 61975135 -122313527 + AT_rich Low_complexity Low_complexity 1 28 0 243 88 0 0 chr4 61975184 61975218 -122313444 + (TA)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr4 61976159 61976183 -122312479 + AT_rich Low_complexity Low_complexity 1 24 0 201 176 0 0 chr4 61976801 61976835 -122311827 + (TAA)n Simple_repeat Simple_repeat 2 35 0 383 309 138 32 chr4 61976839 61977056 -122311606 - MIR SINE MIR -5 257 18 259 294 69 20 chr4 61978054 61978156 -122310506 - MIR SINE MIR -64 198 92 27 62 0 0 chr4 61980023 61980071 -122308591 + AT_rich Low_complexity Low_complexity 1 48 0 233 206 0 29 chr4 61980283 61980351 -122308311 + (TATATG)n Simple_repeat Simple_repeat 4 69 0 24 0 0 0 chr4 61980376 61980400 -122308262 + AT_rich Low_complexity Low_complexity 1 24 0 228 172 0 109 chr4 61980541 61980584 -122308078 - MLT2B1 LTR ERVL 0 520 485 228 67 0 0 chr4 61980584 61980614 -122308048 + (TG)n Simple_repeat Simple_repeat 1 30 0 228 172 0 109 chr4 61980614 61980634 -122308028 - MLT2B1 LTR ERVL -35 485 464 254 326 0 0 chr4 61980634 61980720 -122307942 + (TA)n Simple_repeat Simple_repeat 1 86 0 1108 193 58 93 chr4 61980737 61981115 -122307547 - MLT2B1 LTR ERVL -49 365 1 9585 174 80 50 chr4 61981116 61981407 -122307255 - ERVL LTR ERVL -8 5756 5475 244 243 0 0 chr4 61981407 61981418 -122307244 + L1MC4 LINE L1 6636 6646 -1396 1779 142 70 25 chr4 61981418 61981777 -122306885 - THE1C LTR MaLR 0 375 1 244 243 0 0 chr4 61981777 61981839 -122306823 + L1MC4 LINE L1 6645 6709 -1333 9585 174 80 50 chr4 61981839 61983479 -122305183 - ERVL LTR ERVL -289 5475 3693 12752 225 51 16 chr4 61983491 61986991 -122301671 - ERVL LTR ERVL -1919 3566 2 1106 239 47 115 chr4 61986992 61987419 -122301243 - MLT2B1 LTR ERVL 0 414 17 12362 220 30 16 chr4 61987426 61988699 -122299963 + L1PA15-16 LINE L1 1 1255 -5594 2184 122 3 0 chr4 61988699 61988995 -122299667 - AluSx SINE Alu -15 297 1 12362 220 30 16 chr4 61988995 61992499 -122296163 + L1PA15-16 LINE L1 1255 4525 -2324 8457 200 16 19 chr4 61992605 61995569 -122293093 + L1PA16 LINE L1 3205 6157 -9 24 32 0 0 chr4 61996864 61996895 -122291767 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 61997173 61997194 -122291468 + AT_rich Low_complexity Low_complexity 1 21 0 296 299 52 39 chr4 61997467 61997621 -122291041 - MIR SINE MIR -13 249 94 26 50 0 0 chr4 61997815 61997855 -122290807 + AT_rich Low_complexity Low_complexity 1 40 0 309 320 92 62 chr4 61997962 61998331 -122290331 + MLT1J LTR MaLR 3 382 -129 327 210 37 12 chr4 61998364 61998445 -122290217 - MLT1J LTR MaLR 0 511 429 3880 169 82 23 chr4 61998456 62000082 -122288580 + L1PBa LINE L1 122 1985 -4878 2018 257 47 62 chr4 62002157 62003233 -122285429 - MER63D DNA MER1_type 0 1061 2 378 0 0 0 chr4 62004480 62004522 -122284140 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 647 229 14 7 chr4 62005023 62005167 -122283495 + MER5B DNA MER1_type 28 172 -6 282 297 42 25 chr4 62005200 62005318 -122283344 + MER5B DNA MER1_type 7 126 -52 30 77 0 0 chr4 62005542 62005607 -122283055 + AT_rich Low_complexity Low_complexity 1 65 0 1954 152 5 98 chr4 62006050 62006490 -122282172 - L1MA5 LINE L1 -25 6977 6579 484 113 0 0 chr4 62006490 62006561 -122282101 - MADE1 DNA Mariner 0 80 10 3349 160 31 3 chr4 62006575 62007350 -122281312 - L1MA5 LINE L1 -423 6579 5782 1088 79 7 0 chr4 62007352 62007492 -122281170 + AluY SINE Alu 1 141 -170 7392 223 34 56 chr4 62007528 62009604 -122279058 - L1MA5 LINE L1 -1053 5795 3767 6417 265 157 15 chr4 62009625 62011935 -122276727 - L1MA5 LINE L1 -4202 2647 11 23 0 0 0 chr4 62011969 62011992 -122276670 + AT_rich Low_complexity Low_complexity 1 23 0 1601 173 96 3 chr4 62012613 62012937 -122275725 + MER46B DNA MER2_type 1 229 -7 375 336 86 55 chr4 62015674 62016186 -122272476 - L2 LINE L2 -945 2369 1842 1442 204 127 3 chr4 62016715 62017023 -122271639 - MLT1A1 LTR MaLR -8 357 12 393 353 73 32 chr4 62017323 62017541 -122271121 - MIR SINE MIR -4 258 32 21 36 0 0 chr4 62018050 62018078 -122270584 + AT_rich Low_complexity Low_complexity 1 28 0 1913 179 117 2 chr4 62018082 62018502 -122270160 + L1MA5 LINE L1 5831 6298 -2 25 31 0 0 chr4 62020537 62020569 -122268093 + AT_rich Low_complexity Low_complexity 1 32 0 2088 125 3 0 chr4 62020796 62021100 -122267562 + AluSx SINE Alu 1 305 -7 182 118 29 0 chr4 62021553 62021587 -122267075 + (TA)n Simple_repeat Simple_repeat 2 36 0 799 303 32 11 chr4 62022321 62022598 -122266064 - LTR16A LTR ERVL 0 450 168 1452 193 13 23 chr4 62023334 62023635 -122265027 - AluJo SINE Alu -14 298 1 24 32 0 0 chr4 62023644 62023675 -122264987 + AT_rich Low_complexity Low_complexity 1 31 0 1701 157 3 13 chr4 62025114 62025414 -122263248 + AluJb SINE Alu 3 299 -13 1856 114 0 4 chr4 62025541 62025796 -122262866 + AluSq SINE Alu 24 277 -36 198 0 0 0 chr4 62025798 62025820 -122262842 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 35 63 0 0 chr4 62027215 62027278 -122261384 + AT_rich Low_complexity Low_complexity 1 63 0 381 282 6 0 chr4 62028009 62028172 -122260490 + (TA)n Simple_repeat Simple_repeat 2 165 0 476 278 59 18 chr4 62028431 62028600 -122260062 + MIR SINE MIR 71 246 -16 975 160 19 14 chr4 62030382 62030594 -122258068 - L1MA4 LINE L1 -3 6297 6085 26 0 0 0 chr4 62031326 62031352 -122257310 + AT_rich Low_complexity Low_complexity 1 26 0 343 316 75 31 chr4 62031840 62032160 -122256502 - L1M4 LINE L1 -1638 4508 4175 22 0 0 0 chr4 62032169 62032191 -122256471 + AT_rich Low_complexity Low_complexity 1 22 0 291 28 0 0 chr4 62032597 62032633 -122256029 + (TG)n Simple_repeat Simple_repeat 2 37 0 4458 144 10 34 chr4 62032839 62033639 -122255023 - LTR25 LTR ERV1 -13 781 1 337 351 67 32 chr4 62034933 62035215 -122253447 - MLT1I LTR MaLR -49 360 69 917 258 85 58 chr4 62035304 62035714 -122252948 + HAL1b LINE L1 532 965 -383 2100 92 4 4 chr4 62035714 62036031 -122252631 - AluSx SINE Alu 0 317 1 917 258 85 58 chr4 62036031 62036205 -122252457 + HAL1b LINE L1 965 1133 -215 288 296 0 11 chr4 62036375 62036463 -122252199 + MLT1I LTR MaLR 81 167 -242 1374 214 84 53 chr4 62037225 62037715 -122250947 + MLT1D LTR MaLR 1 505 0 575 324 58 14 chr4 62038733 62039011 -122249651 - L2 LINE L2 -161 3152 2863 491 283 171 5 chr4 62039807 62039994 -122248668 + MIR SINE MIR 19 236 -26 342 298 21 37 chr4 62041273 62041464 -122247198 - Charlie8 DNA MER1_type -2203 214 27 2152 123 10 0 chr4 62043670 62043979 -122244683 - AluSx SINE Alu 0 312 1 21 57 0 0 chr4 62044227 62044262 -122244400 + AT_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chr4 62044362 62044406 -122244256 + AT_rich Low_complexity Low_complexity 1 44 0 1785 224 62 114 chr4 62045348 62046004 -122242658 + MLT1E2 LTR MaLR 1 624 -2 1559 118 9 0 chr4 62046705 62046926 -122241736 - AluSg/x SINE Alu -14 296 74 * 2288 75 3 3 chr4 62046925 62047220 -122241442 - AluSg SINE Alu -15 295 1 2214 129 20 6 chr4 62047649 62048006 -122240656 - MER4D LTR ERV1 -510 362 1 275 378 0 9 chr4 62048026 62048137 -122240525 - MIR SINE MIR -150 112 3 291 236 0 14 chr4 62048160 62048232 -122240430 - MER92C LTR ERV1 0 554 484 6957 53 16 4 chr4 62048318 62049300 -122239362 - L1PA8 LINE L1 -13 6159 5174 195 69 0 0 chr4 62049300 62049329 -122239333 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6957 53 16 4 chr4 62049329 62049347 -122239315 - L1PA8 LINE L1 -998 5174 5158 483 247 45 39 chr4 62049347 62049491 -122239171 - MER92B LTR ERV1 -488 148 1 * 563 295 96 39 chr4 62049491 62049753 -122238909 + HsTC2c DNA Tc2 136 415 -314 390 252 235 8 chr4 62049781 62049900 -122238762 + MER5A DNA MER1_type 44 189 0 620 341 33 4 chr4 62049903 62050176 -122238486 + HsTC2c DNA Tc2 449 729 0 1900 163 73 14 chr4 62050301 62050645 -122238017 + THE1B LTR MaLR 1 364 0 10785 111 13 4 chr4 62050645 62052211 -122236451 + THE1B-int LTR MaLR 1 1580 0 1948 152 76 15 chr4 62052211 62052554 -122236108 + THE1B LTR MaLR 1 364 0 682 121 0 0 chr4 62053479 62053578 -122235084 + THE1-int LTR MaLR 693 791 -789 399 253 0 21 chr4 62055615 62055710 -122232952 + MER5A DNA MER1_type 17 109 -80 215 316 176 37 chr4 62055633 62055769 -122232893 - MER5A DNA MER1_type -23 166 12 * 24 0 0 0 chr4 62057008 62057032 -122231630 + AT_rich Low_complexity Low_complexity 1 24 0 11751 202 30 13 chr4 62057393 62062672 -122225990 - L1 LINE L1 -1431 6134 12 1635 301 82 32 chr4 62062676 62063554 -122225108 + L2 LINE L2 1990 2983 -289 361 275 69 76 chr4 62064118 62064380 -122224282 + L2 LINE L2 3042 3301 -12 868 307 123 13 chr4 62064601 62065069 -122223593 + MLT1G LTR MaLR 77 590 0 870 284 75 34 chr4 62065228 62065696 -122222966 - HAL1 LINE L1 -848 1659 1173 639 135 0 0 chr4 62065975 62066086 -122222576 - L1MA7 LINE L1 0 6291 6181 2019 125 7 0 chr4 62067252 62067539 -122221123 - AluY SINE Alu -22 289 1 216 0 0 0 chr4 62070175 62070199 -122218463 + (T)n Simple_repeat Simple_repeat 1 24 0 216 0 0 0 chr4 62071386 62071410 -122217252 + (T)n Simple_repeat Simple_repeat 1 24 0 1820 264 18 38 chr4 62071415 62072021 -122216641 - L1ME1 LINE L1 -4 6162 5569 6371 88 1 3 chr4 62072024 62073490 -122215172 - L1PA7 LINE L1 0 6154 4678 4603 102 11 1 chr4 62073491 62074157 -122214505 + L1PA7 LINE L1 3992 4663 -1483 883 239 88 21 chr4 62074151 62074435 -122214227 - L1ME1 LINE L1 -578 5584 5282 * 2615 289 65 34 chr4 62074470 62075953 -122212709 - L1ME1 LINE L1 -868 5278 3750 241 200 20 0 chr4 62076384 62076434 -122212228 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 828 158 0 8 chr4 62076934 62077067 -122211595 + FLAM_C SINE Alu 2 133 0 180 245 66 104 chr4 62078306 62078412 -122210250 - L3 LINE CR1 -565 1012 911 1401 276 19 32 chr4 62080125 62080556 -122208106 + MLT1D LTR MaLR 81 505 0 2076 127 0 19 chr4 62080906 62081222 -122207440 + AluSx SINE Alu 1 310 -2 281 164 36 0 chr4 62081343 62081398 -122207264 - MLT2B1 LTR ERVL 0 520 464 198 143 0 0 chr4 62081398 62081433 -122207229 + (CA)n Simple_repeat Simple_repeat 1 35 0 2123 239 8 19 chr4 62081433 62081508 -122207154 - MLT2B1 LTR ERVL -40 480 406 876 255 105 46 chr4 62081508 62081881 -122206781 - MSTD LTR MaLR 0 396 2 2123 239 8 19 chr4 62081881 62082290 -122206372 - MLT2B1 LTR ERVL -114 406 1 2616 165 2 15 chr4 62082787 62083241 -122205421 + L1MA3 LINE L1 997 1444 -6121 7560 31 0 0 chr4 62083245 62084707 -122203955 - L1PA4 LINE L1 0 6155 4694 11544 45 0 1 chr4 62084707 62086142 -122202520 + L1PA4 LINE L1 3262 4695 -1451 4847 162 16 0 chr4 62086139 62086904 -122201758 + L1MA3 LINE L1 1444 2220 -5345 * 4989 221 8 2 chr4 62086900 62088880 -122199782 + L1MA3 LINE L1 2840 4892 -2673 * 5783 146 19 42 chr4 62088878 62090349 -122198313 + L1MA3 LINE L1 6096 7526 -198 2609 13 7 3 chr4 62090349 62090652 -122198010 - AluYb8 SINE Alu -14 304 1 5783 146 19 42 chr4 62090652 62090838 -122197824 + L1MA3 LINE L1 7526 7715 -9 214 331 8 57 chr4 62090842 62090966 -122197696 - L2 LINE L2 -694 2620 2503 2064 106 3 14 chr4 62090982 62091275 -122197387 - AluSc SINE Alu -19 290 1 239 269 59 28 chr4 62091281 62091571 -122197091 - L1M4 LINE L1 -754 5392 5094 359 310 43 21 chr4 62091615 62091802 -122196860 - L1M4 LINE L1 -1449 4697 4507 614 342 34 13 chr4 62091916 62092392 -122196270 - L1MC/D LINE L1 -2059 5749 5264 2125 176 29 17 chr4 62092728 62093149 -122195513 + MSTB LTR MaLR 1 426 0 252 291 17 40 chr4 62093309 62093484 -122195178 - L1MC/D LINE L1 -1593 4553 4383 379 252 60 75 chr4 62094015 62094348 -122194314 - L1M4 LINE L1 -1332 4814 4487 251 329 103 54 chr4 62094461 62094811 -122193851 + L2 LINE L2 2946 3312 -1 2039 145 0 0 chr4 62095832 62096142 -122192520 + AluSg SINE Alu 1 310 0 1149 153 131 77 chr4 62097080 62097354 -122191308 + AluSx SINE Alu 1 289 -13 24509 154 7 18 chr4 62098068 62103527 -122185135 - L1PA8A LINE L1 -31 6415 1008 21 36 0 0 chr4 62104050 62104078 -122184584 + AT_rich Low_complexity Low_complexity 1 28 0 249 98 0 0 chr4 62104478 62104519 -122184143 + (TC)n Simple_repeat Simple_repeat 2 42 0 22 35 0 0 chr4 62104973 62105002 -122183660 + AT_rich Low_complexity Low_complexity 1 29 0 2231 97 3 3 chr4 62105009 62105328 -122183334 - L1PA6 LINE L1 -5 6149 5831 847 231 60 60 chr4 62105430 62105729 -122182933 + MLT1A1 LTR MaLR 67 365 0 431 366 92 16 chr4 62105955 62106261 -122182401 + L2 LINE L2 2962 3290 -23 24 77 0 0 chr4 62106362 62106414 -122182248 + AT_rich Low_complexity Low_complexity 1 52 0 289 295 117 85 chr4 62108400 62108633 -122180029 - MLT1I LTR MaLR -21 388 164 2164 122 9 94 chr4 62108633 62109068 -122179594 - MER48 LTR ERV1 0 398 1 289 295 117 85 chr4 62109068 62109093 -122179569 - MLT1I LTR MaLR -245 164 141 2536 136 116 57 chr4 62109093 62109720 -122178942 - MER4A LTR ERV1 0 664 1 289 295 117 85 chr4 62109720 62109836 -122178826 - MLT1I LTR MaLR -268 141 1 212 358 156 37 chr4 62110422 62110616 -122178046 - MIR SINE MIR -5 257 33 444 288 8 0 chr4 62110616 62110748 -122177914 - MER94 DNA DNA -1 133 1 212 358 156 37 chr4 62110748 62110771 -122177891 - MIR SINE MIR -229 33 14 21 0 0 0 chr4 62111200 62111221 -122177441 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 62111327 62111351 -122177311 + AT_rich Low_complexity Low_complexity 1 24 0 6591 164 23 15 chr4 62112238 62114478 -122174184 - L1MA1 LINE L1 -6 7715 4171 43042 45 1 6 chr4 62114507 62120638 -122168024 - L1PA4 LINE L1 -8 6147 49 4116 136 6 3 chr4 62120644 62121298 -122167364 - L1PA13 LINE L1 -2 6161 5506 6187 226 114 10 chr4 62121298 62122835 -122165827 - L1MA1 LINE L1 -5854 1711 16 286 266 48 40 chr4 62123284 62123408 -122165254 - MER5B DNA MER1_type -53 125 1 306 106 0 0 chr4 62123822 62123869 -122164793 + (TTCC)n Simple_repeat Simple_repeat 3 49 0 22 58 0 43 chr4 62124033 62124102 -122164560 + AT_rich Low_complexity Low_complexity 1 66 0 27 29 0 0 chr4 62124397 62124431 -122164231 + AT_rich Low_complexity Low_complexity 1 34 0 1566 192 0 4 chr4 62124648 62124929 -122163733 - AluJb SINE Alu -24 288 9 2324 80 0 22 chr4 62126831 62127145 -122161517 - AluY SINE Alu -2 309 3 303 280 75 47 chr4 62127398 62127612 -122161050 - L1MC4a LINE L1 -1542 6266 6047 22 0 0 0 chr4 62127612 62127634 -122161028 + AT_rich Low_complexity Low_complexity 1 22 0 314 322 34 81 chr4 62128222 62128371 -122160291 + L2 LINE L2 3088 3229 -43 1506 201 3 20 chr4 62129369 62129690 -122158972 + AluJo SINE Alu 6 312 0 324 323 161 32 chr4 62130214 62130530 -122158132 - MLT1J LTR MaLR -51 460 104 215 320 72 10 chr4 62130674 62130771 -122157891 + MIR SINE MIR 36 138 -124 22 35 0 0 chr4 62131369 62131398 -122157264 + AT_rich Low_complexity Low_complexity 1 29 0 252 192 8 144 chr4 62131851 62131976 -122156686 - MIR SINE MIR -65 197 90 592 247 18 24 chr4 62132587 62132757 -122155905 - MLT1J LTR MaLR -318 193 25 23 0 0 0 chr4 62133153 62133176 -122155486 + AT_rich Low_complexity Low_complexity 1 23 0 25 83 0 0 chr4 62134306 62134366 -122154296 + AT_rich Low_complexity Low_complexity 1 60 0 387 0 0 0 chr4 62134955 62134998 -122153664 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 380 273 20 13 chr4 62135044 62135194 -122153468 + MER104 DNA Tc2 14 164 -16 213 65 0 0 chr4 62135301 62135332 -122153330 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 362 335 25 35 chr4 62135656 62135859 -122152803 + L2 LINE L2 2150 2350 -964 275 125 0 0 chr4 62135864 62135904 -122152758 - THE1B LTR MaLR 0 364 325 * 630 156 73 0 chr4 62135892 62136001 -122152661 - THE1B LTR MaLR -247 117 1 9883 122 10 60 chr4 62136002 62137664 -122150998 - THE1B-int LTR MaLR -1 1579 1 2277 150 8 0 chr4 62137664 62138025 -122150637 - THE1B LTR MaLR 0 364 1 416 278 130 18 chr4 62138071 62138240 -122150422 + L2 LINE L2 2376 2563 -751 360 383 74 28 chr4 62138249 62138573 -122150089 + L1MEc LINE L1 64 402 -5994 1326 273 98 58 chr4 62138684 62140011 -122148651 + L1MEc LINE L1 547 1926 -4470 642 345 58 44 chr4 62140263 62140994 -122147668 + L2 LINE L2 2581 3311 -2 686 231 55 11 chr4 62141424 62141606 -122147056 - MLT1F LTR MaLR 0 542 353 1263 38 38 0 chr4 62142095 62142252 -122146410 + L1PA5 LINE L1 5986 6148 -6 24 0 0 0 chr4 62142252 62142276 -122146386 + AT_rich Low_complexity Low_complexity 1 24 0 2111 165 57 30 chr4 62142749 62143269 -122145393 + MLT2A2 LTR ERVL 1 554 0 600 195 8 0 chr4 62143436 62143559 -122145103 - L1MD2 LINE L1 -4 6355 6232 830 275 50 37 chr4 62143548 62143943 -122144719 - L1MDb LINE L1 -6131 409 34 282 260 70 30 chr4 62145848 62145948 -122142714 - MIR SINE MIR -110 152 49 2218 84 0 3 chr4 62146118 62146414 -122142248 - AluY SINE Alu -15 296 2 449 247 31 43 chr4 62146563 62146725 -122141937 + MIR SINE MIR 103 262 0 1605 197 14 0 chr4 62147363 62147657 -122141005 + AluJo SINE Alu 1 298 -14 260 266 51 0 chr4 62148483 62148562 -122140100 + L1MC4 LINE L1 6621 6703 -1339 246 114 0 0 chr4 62148564 62148608 -122140054 - LTR66 LTR ERVL -169 441 398 222 118 0 0 chr4 62149013 62149047 -122139615 + (CA)n Simple_repeat Simple_repeat 2 35 0 22 35 0 0 chr4 62149225 62149254 -122139408 + AT_rich Low_complexity Low_complexity 1 29 0 274 328 40 16 chr4 62149315 62149440 -122139222 + L2 LINE L2 3186 3313 0 303 260 26 0 chr4 62149621 62149698 -122138964 + CT-rich Low_complexity Low_complexity 2 80 0 21 0 0 0 chr4 62151174 62151195 -122137467 + AT_rich Low_complexity Low_complexity 1 21 0 206 204 0 0 chr4 62151275 62151319 -122137343 - L3b LINE CR1 -1 1582 1539 22 0 0 0 chr4 62152280 62152302 -122136360 + AT_rich Low_complexity Low_complexity 1 22 0 1257 240 25 30 chr4 62153314 62153677 -122134985 - MER4D LTR ERV1 0 903 543 439 236 0 12 chr4 62153672 62153789 -122134873 - MER4E LTR ERV1 -588 284 62 * 1753 141 39 3 chr4 62153775 62154059 -122134603 - MER49 LTR ERV1 -629 294 1 2740 109 5 22 chr4 62154132 62154543 -122134119 + MLT2A1 LTR ERVL 1 404 -40 298 43 106 0 chr4 62154573 62154620 -122134042 + MLT2A1 LTR ERVL 402 453 0 226 195 55 47 chr4 62154666 62154794 -122133868 + (TTATA)n Simple_repeat Simple_repeat 5 133 0 2932 165 45 27 chr4 62154865 62155448 -122133214 + LTR34 LTR ERV1 4 596 -103 41 0 0 0 chr4 62155536 62155577 -122133085 + AT_rich Low_complexity Low_complexity 1 41 0 27 0 0 0 chr4 62155792 62155819 -122132843 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr4 62156961 62156984 -122131678 + AT_rich Low_complexity Low_complexity 1 23 0 254 400 28 6 chr4 62157091 62157271 -122131391 + MIR3 SINE MIR 1 184 -24 2725 228 54 6 chr4 62157383 62158049 -122130613 - L1MC3 LINE L1 -448 7337 6640 1773 133 55 81 chr4 62158068 62158453 -122130209 + THE1C LTR MaLR 1 375 0 313 293 77 19 chr4 62158472 62158736 -122129926 - L1MCa LINE L1 -5796 249 4 475 244 102 43 chr4 62159792 62159984 -122128678 - MER114 LTR ERV -3 645 427 667 191 7 29 chr4 62159984 62160120 -122128542 - FLAM_C SINE Alu 0 133 1 475 244 102 43 chr4 62160120 62160230 -122128432 - MER114 LTR ERV -221 427 325 694 275 24 3 chr4 62160323 62160614 -122128048 - MER114 LTR ERV -340 308 12 1077 150 0 0 chr4 62160615 62160788 -122127874 - L1MA7 LINE L1 -292 5999 5827 24 0 0 0 chr4 62162237 62162261 -122126401 + AT_rich Low_complexity Low_complexity 1 24 0 286 182 18 0 chr4 62162635 62162690 -122125972 + MLT1B LTR MaLR 1 56 -334 2217 114 3 0 chr4 62162808 62163114 -122125548 - AluSq SINE Alu -6 307 1 1322 222 27 33 chr4 62163166 62163500 -122125162 - MLT1B LTR MaLR 0 390 59 32 43 0 0 chr4 62165541 62165587 -122123075 + AT_rich Low_complexity Low_complexity 1 46 0 304 147 0 29 chr4 62166290 62166358 -122122304 + (TA)n Simple_repeat Simple_repeat 1 66 0 258 349 60 20 chr4 62166409 62166558 -122122104 - MIR SINE MIR -62 200 46 642 242 40 37 chr4 62167267 62167589 -122121073 - MER97a DNA MER1_type? -17 877 555 6061 31 0 0 chr4 62167589 62168833 -122119829 - L1PA2 LINE L1 -180 5975 4732 407 69 0 0 chr4 62168833 62168889 -122119773 + L1PA2 LINE L1 6095 6152 -3 860 214 58 40 chr4 62168908 62169132 -122119530 - MER97a DNA MER1_type? -327 567 340 261 303 20 20 chr4 62169286 62169385 -122119277 - MLT1B LTR MaLR -431 99 1 23 33 0 0 chr4 62169432 62169462 -122119200 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 62169640 62169662 -122119000 + AT_rich Low_complexity Low_complexity 1 22 0 187 125 69 0 chr4 62169742 62169814 -122118848 + (TA)n Simple_repeat Simple_repeat 1 77 0 58 54 0 0 chr4 62169821 62169914 -122118748 + AT_rich Low_complexity Low_complexity 1 93 0 246 145 89 8 chr4 62170022 62170146 -122118516 + (TA)n Simple_repeat Simple_repeat 1 134 0 22 35 0 0 chr4 62170204 62170233 -122118429 + AT_rich Low_complexity Low_complexity 1 29 0 2467 193 37 7 chr4 62170985 62171447 -122117215 - MER70B LTR ERVL -102 476 1 794 249 36 16 chr4 62172749 62172942 -122115720 - MIR SINE MIR -30 232 36 686 201 0 8 chr4 62172947 62173081 -122115581 + MLT2B3 LTR ERVL 1 133 -421 346 94 250 0 chr4 62173183 62173247 -122115415 + MADE1 DNA Mariner 1 80 0 183 42 0 0 chr4 62173368 62173392 -122115270 + (A)n Simple_repeat Simple_repeat 1 24 0 1433 302 123 30 chr4 62173564 62174236 -122114426 + L2 LINE L2 59 793 -2521 292 250 233 0 chr4 62174246 62174362 -122114300 + L2 LINE L2 3171 3313 0 3585 157 47 53 chr4 62174808 62175112 -122113550 - L1MA9 LINE L1 -1 6311 6008 544 316 38 60 chr4 62175112 62175665 -122112997 - L1MC3 LINE L1 -1780 6005 5465 23 0 0 0 chr4 62175945 62175968 -122112694 + AT_rich Low_complexity Low_complexity 1 23 0 503 104 39 0 chr4 62176598 62176675 -122111987 + MADE1 DNA Mariner 1 80 0 207 200 40 13 chr4 62176760 62176835 -122111827 + T-rich Low_complexity Low_complexity 5 81 0 25 0 0 0 chr4 62178305 62178330 -122110332 + AT_rich Low_complexity Low_complexity 1 25 0 2289 130 71 20 chr4 62180047 62180454 -122108208 - MSTA LTR MaLR 0 428 1 221 267 258 17 chr4 62181357 62181375 -122107287 + L3 LINE CR1 1425 1437 -140 585 42 53 0 chr4 62181375 62181470 -122107192 + (TAGA)n Simple_repeat Simple_repeat 1 100 0 221 267 258 17 chr4 62181470 62181571 -122107091 + L3 LINE CR1 1437 1573 -4 180 346 0 0 chr4 62181684 62181736 -122106926 + L2 LINE L2 3206 3257 -15 22 0 0 0 chr4 62181987 62182009 -122106653 + AT_rich Low_complexity Low_complexity 1 22 0 483 309 52 29 chr4 62182574 62182784 -122105878 + MIR SINE MIR 2 216 -46 263 313 45 0 chr4 62184161 62184228 -122104434 + L2 LINE L2 3208 3277 -36 23 54 0 0 chr4 62184385 62184422 -122104240 + AT_rich Low_complexity Low_complexity 1 37 0 2901 37 2 3 chr4 62184850 62185357 -122103305 - L1PA4 LINE L1 -540 5614 5108 4694 29 2 0 chr4 62185357 62185910 -122102752 + L1PA4 LINE L1 5598 6152 -3 279 299 45 0 chr4 62186513 62186580 -122102082 - L2 LINE L2 -36 3277 3208 236 118 0 0 chr4 62186860 62186894 -122101768 - L1PA15-16 LINE L1 -6291 558 525 234 342 8 0 chr4 62186901 62187018 -122101644 - L1M4 LINE L1 -2756 3390 3273 3248 220 15 1 chr4 62187073 62187794 -122100868 - L1PA15-16 LINE L1 -5531 1318 475 302 196 0 0 chr4 62187788 62187844 -122100818 - L1PA15-16 LINE L1 -6613 236 181 * 685 175 144 152 chr4 62188035 62188424 -122100238 - MER57A LTR ERV1 -2 401 16 403 304 105 25 chr4 62188511 62188786 -122099876 + MLT1G LTR MaLR 248 510 -20 565 299 72 17 chr4 62188786 62189200 -122099462 - L1M4 LINE L1 -3517 2629 2193 325 267 40 89 chr4 62189512 62189714 -122098948 - HAL1 LINE L1 -865 1642 1451 23 0 0 0 chr4 62189769 62189792 -122098870 + AT_rich Low_complexity Low_complexity 1 23 0 5832 146 7 10 chr4 62190598 62191627 -122097035 + L1PA15-16 LINE L1 1254 2426 -4423 2726 13 0 3 chr4 62191627 62191936 -122096726 - AluYa5 SINE Alu -3 308 1 5832 146 7 10 chr4 62191936 62192246 -122096416 + L1PA15-16 LINE L1 2426 2735 -4114 1827 198 13 10 chr4 62192245 62192640 -122096022 - L1MB1 LINE L1 -269 5899 5504 * 3596 217 52 16 chr4 62192639 62193582 -122095080 + L1 LINE L1 4315 5291 -855 361 177 42 21 chr4 62193554 62193650 -122095012 + L1P4 LINE L1 5377 5474 -692 * 375 154 41 8 chr4 62193650 62193773 -122094889 + (TA)n Simple_repeat Simple_repeat 2 128 0 22 70 0 0 chr4 62193891 62193934 -122094728 + AT_rich Low_complexity Low_complexity 1 43 0 24 67 0 0 chr4 62194688 62194733 -122093929 + AT_rich Low_complexity Low_complexity 1 45 0 2238 105 0 0 chr4 62196175 62196470 -122092192 + AluSc SINE Alu 1 295 -14 2119 277 61 37 chr4 62197908 62198239 -122090423 - L2 LINE L2 -615 2699 2377 2102 130 3 3 chr4 62198239 62198540 -122090122 - AluSp SINE Alu -12 301 1 2119 277 61 37 chr4 62198540 62198962 -122089700 - L2 LINE L2 -937 2377 1928 1451 184 18 29 chr4 62199237 62199514 -122089148 + AluJb SINE Alu 1 274 -38 22 0 0 0 chr4 62199522 62199544 -122089118 + AT_rich Low_complexity Low_complexity 1 22 0 38777 81 6 6 chr4 62200525 62206665 -122081997 + L1PA6 LINE L1 11 6153 -1 10934 178 39 7 chr4 62206680 62207174 -122081488 - L1MA6 LINE L1 -12 6288 5811 264 30 0 0 chr4 62207174 62207207 -122081455 + (TG)n Simple_repeat Simple_repeat 2 34 0 10934 178 39 7 chr4 62207207 62210008 -122078654 - L1MA6 LINE L1 -489 5811 2886 1675 124 32 3 chr4 62211059 62211341 -122077321 - L1MA3 LINE L1 -3 6302 6013 1231 252 61 3 chr4 62211395 62211705 -122076957 + MER58B DNA MER1_type 10 337 -4 258 172 20 121 chr4 62212115 62212214 -122076448 + MER103 DNA DNA 4 92 -74 531 319 44 12 chr4 62212432 62212683 -122075979 - MIR SINE MIR -2 260 2 901 265 48 58 chr4 62212918 62213296 -122075366 - MLT1A2 LTR MaLR 0 374 1 203 313 73 21 chr4 62213849 62213945 -122074717 + MIR SINE MIR 21 121 -87 32 26 0 0 chr4 62214024 62214063 -122074599 + AT_rich Low_complexity Low_complexity 1 39 0 1342 237 40 13 chr4 62214234 62214614 -122074048 - MLT1B LTR MaLR 0 390 1 21 0 0 0 chr4 62214852 62214873 -122073789 + AT_rich Low_complexity Low_complexity 1 21 0 268 273 147 7 chr4 62217052 62217202 -122071460 + MLT1L LTR MaLR 422 592 -23 1255 220 50 31 chr4 62217206 62217668 -122070994 - MLT2B1 LTR ERVL -1 519 1 1734 184 46 0 chr4 62218994 62219363 -122069299 - L1MB3 LINE L1 -8 6175 5790 41 36 0 0 chr4 62219599 62219654 -122069008 + AT_rich Low_complexity Low_complexity 1 55 0 1672 176 106 22 chr4 62219788 62220146 -122068516 + MLT1B LTR MaLR 1 388 -2 227 306 0 0 chr4 62221017 62221079 -122067583 - MIR SINE MIR -70 192 131 312 332 79 6 chr4 62221208 62221372 -122067290 - MIR SINE MIR -46 216 42 1236 167 105 145 chr4 62221913 62222445 -122066217 - MER67D LTR ERV1 -3 511 1 608 322 55 63 chr4 62222461 62222824 -122065838 + MLT1J LTR MaLR 5 364 -147 728 205 106 7 chr4 62222839 62223172 -122065490 - LTR37A LTR ERV1 -19 407 3 339 25 0 0 chr4 62223255 62223295 -122065367 + (TA)n Simple_repeat Simple_repeat 2 41 0 1172 257 95 14 chr4 62224297 62224593 -122064069 + MER45B DNA AcHobo 2 321 -719 1686 202 140 25 chr4 62224608 62225094 -122063568 + MER45B DNA AcHobo 497 1038 -2 399 329 122 14 chr4 62225100 62225453 -122063209 - L2 LINE L2 -108 3205 2815 1946 104 28 67 chr4 62225582 62225938 -122062724 - MER4D LTR ERV1 0 903 562 14869 70 6 5 chr4 62226042 62226306 -122062356 - L1P2 LINE L1 -371 5783 5521 1962 98 69 0 chr4 62226306 62226582 -122062080 + AluSg SINE Alu 1 295 -15 14869 70 6 5 chr4 62226582 62228692 -122059970 - L1P2 LINE L1 -633 5521 3410 228 271 14 0 chr4 62228882 62228952 -122059710 + (TA)n Simple_repeat Simple_repeat 1 71 0 232 153 14 56 chr4 62229137 62229209 -122059453 + L1MC4 LINE L1 6628 6696 -1346 237 182 13 26 chr4 62229213 62229290 -122059372 + (TA)n Simple_repeat Simple_repeat 2 77 0 33 25 0 0 chr4 62229403 62229443 -122059219 + AT_rich Low_complexity Low_complexity 1 40 0 337 327 89 71 chr4 62229661 62229918 -122058744 + L2 LINE L2 2450 2720 -594 2376 98 8 11 chr4 62229918 62230274 -122058388 - L1PA8 LINE L1 -10 6162 5808 337 327 89 71 chr4 62230274 62230466 -122058196 + L2 LINE L2 2720 2907 -407 231 372 12 0 chr4 62230513 62230599 -122058063 + L2 LINE L2 2928 3014 -299 182 338 13 0 chr4 62230903 62230980 -122057682 + L2 LINE L2 3230 3307 -6 21 0 0 0 chr4 62232236 62232257 -122056405 + AT_rich Low_complexity Low_complexity 1 21 0 2549 43 7 0 chr4 62235180 62235485 -122053177 + AluY SINE Alu 1 307 -4 1188 188 0 0 chr4 62237622 62237830 -122050832 + AluJb SINE Alu 87 294 -18 298 281 43 43 chr4 62238110 62238249 -122050413 - MIR SINE MIR -120 142 4 182 384 160 14 chr4 62238472 62238691 -122049971 + MIR SINE MIR 12 262 0 192 40 0 0 chr4 62238827 62238852 -122049810 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 186 103 0 0 chr4 62239152 62239181 -122049481 + (GA)n Simple_repeat Simple_repeat 2 30 0 24 32 0 0 chr4 62239546 62239577 -122049085 + AT_rich Low_complexity Low_complexity 1 31 0 186 370 31 16 chr4 62240173 62240300 -122048362 - L3 LINE CR1 -4 1573 1445 * 202 265 0 20 chr4 62240298 62240347 -122048315 - L2 LINE L2 -4 3268 3221 1559 168 59 33 chr4 62240768 62241071 -122047591 - AluJb SINE Alu -1 311 1 887 294 93 62 chr4 62241499 62242013 -122046649 - MLT2F LTR ERVL -74 589 60 389 287 85 53 chr4 62243134 62243322 -122045340 + MIR SINE MIR 5 198 -64 2104 130 0 0 chr4 62244480 62244780 -122043882 + AluSx SINE Alu 1 300 -12 26 82 0 0 chr4 62244911 62244972 -122043690 + AT_rich Low_complexity Low_complexity 1 61 0 21 71 0 0 chr4 62245181 62245223 -122043439 + AT_rich Low_complexity Low_complexity 1 42 0 2374 85 0 0 chr4 62245231 62245537 -122043125 + AluY SINE Alu 1 306 -5 180 77 0 0 chr4 62245928 62245954 -122042708 + (A)n Simple_repeat Simple_repeat 1 26 0 783 224 62 29 chr4 62246058 62246330 -122042332 - L1MC4 LINE L1 -1 8041 7761 * 2864 262 86 53 chr4 62246324 62246472 -122042190 - L1MC4a LINE L1 -239 7569 7427 3270 110 45 4 chr4 62246472 62246963 -122041699 - MER9 LTR ERVK 0 511 1 2864 262 86 53 chr4 62246963 62247687 -122040975 - L1MC4a LINE L1 -381 7427 6728 7586 73 4 2 chr4 62247687 62248654 -122040008 + LTR5 LTR ERVK 1 969 0 2864 262 86 53 chr4 62248654 62248698 -122039964 - L1MC4a LINE L1 -1080 6728 6687 1441 200 80 12 chr4 62248698 62249023 -122039639 - MER7A DNA MER2_type -1 345 1 2864 262 86 53 chr4 62249023 62249232 -122039430 - L1MC4a LINE L1 -1121 6687 6486 192 77 0 0 chr4 62249232 62249258 -122039404 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2864 262 86 53 chr4 62249258 62249422 -122039240 - L1MC4a LINE L1 -1322 6486 6235 4604 136 52 50 chr4 62249429 62250564 -122038098 + L1PA16 LINE L1 5027 6163 -3 551 336 101 21 chr4 62250606 62250942 -122037720 + L2 LINE L2 2949 3311 -2 284 287 102 36 chr4 62251969 62252136 -122036526 - L2 LINE L2 -18 3295 3118 181 419 65 10 chr4 62252421 62252712 -122035950 - L2 LINE L2 -530 2784 2478 2141 75 41 10 chr4 62252712 62253005 -122035657 + AluY SINE Alu 1 302 -9 327 330 95 41 chr4 62253081 62253375 -122035287 - L2 LINE L2 -8 3305 2996 243 282 206 24 chr4 62253587 62253757 -122034905 + L2 LINE L2 3113 3313 0 1186 220 19 0 chr4 62255347 62255615 -122033047 - L1MA7 LINE L1 -26 6265 5993 1051 136 0 0 chr4 62255615 62255762 -122032900 - AluSq SINE Alu -149 164 18 2672 178 26 16 chr4 62255766 62256406 -122032256 - L1MA7 LINE L1 -510 5781 5133 314 237 19 0 chr4 62256422 62256522 -122032140 - L1M4 LINE L1 -2258 4950 4848 4245 222 21 31 chr4 62256566 62258294 -122030368 - L1M4 LINE L1 -2727 4481 2773 3304 205 136 38 chr4 62258314 62259290 -122029372 - L1M4 LINE L1 -6137 1072 1 501 340 58 0 chr4 62259492 62259696 -122028966 + MIR SINE MIR 14 229 -33 2003 148 65 8 chr4 62259974 62260345 -122028317 - L1PA15 LINE L1 -7 6158 5767 1893 193 43 26 chr4 62261809 62262343 -122026319 + MLT2A2 LTR ERVL 1 544 -10 21 0 0 0 chr4 62262848 62262869 -122025793 + AT_rich Low_complexity Low_complexity 1 21 0 2292 99 56 18 chr4 62264302 62264644 -122024018 - THE1A LTR MaLR 0 355 1 1133 119 16 5 chr4 62264647 62264832 -122023830 + L1M2 LINE L1 5489 5675 -637 722 169 0 0 chr4 62264832 62264956 -122023706 - AluSp/q SINE Alu -9 304 181 483 158 3 3 chr4 62264956 62265052 -122023610 + L1M2 LINE L1 5677 5772 -528 1553 207 3 3 chr4 62265523 62265818 -122022844 + AluJo SINE Alu 7 301 -11 209 133 17 50 chr4 62266636 62266696 -122021966 + (TA)n Simple_repeat Simple_repeat 2 59 0 301 206 20 59 chr4 62266698 62266800 -122021862 + L1MC4 LINE L1 6612 6709 -1333 365 249 65 30 chr4 62266802 62266971 -122021691 + (ACATG)n Simple_repeat Simple_repeat 1 175 0 292 81 7 96 chr4 62267004 62267140 -122021522 + (TA)n Simple_repeat Simple_repeat 2 125 0 24 67 0 0 chr4 62268881 62268926 -122019736 + AT_rich Low_complexity Low_complexity 1 45 0 239 313 112 30 chr4 62269134 62269268 -122019394 - MIR3 SINE MIR -41 167 23 3215 176 91 5 chr4 62269378 62270036 -122018626 + MER6 DNA MER2_type 1 715 -150 721 85 19 0 chr4 62270041 62270147 -122018515 - AluY SINE Alu -16 295 188 1866 112 4 32 chr4 62270147 62270449 -122018213 + AluSq SINE Alu 15 308 0 724 178 7 0 chr4 62270610 62270745 -122017917 + L1PA16 LINE L1 6017 6152 -14 203 218 0 36 chr4 62270801 62270856 -122017806 + (CATATA)n Simple_repeat Simple_repeat 5 57 0 * 205 200 0 0 chr4 62270821 62270861 -122017801 + (TA)n Simple_repeat Simple_repeat 1 40 0 222 306 161 8 chr4 62270897 62271021 -122017641 - MIR SINE MIR -48 214 72 433 285 78 39 chr4 62271255 62271324 -122017338 - MLT1I LTR MaLR -19 390 325 2173 67 3 51 chr4 62271324 62271637 -122017025 - AluY SINE Alu -11 300 3 433 285 78 39 chr4 62271637 62271848 -122016814 - MLT1I LTR MaLR -84 325 99 23 54 0 0 chr4 62272061 62272098 -122016564 + AT_rich Low_complexity Low_complexity 1 37 0 1889 135 0 35 chr4 62273597 62273908 -122014754 - AluSx SINE Alu -12 300 1 21 0 0 0 chr4 62274113 62274134 -122014528 + AT_rich Low_complexity Low_complexity 1 21 0 1504 244 126 20 chr4 62274275 62275005 -122013657 - Charlie7 DNA MER1_type -207 2405 1599 1264 291 21 13 chr4 62275529 62276004 -122012658 - Charlie4a DNA MER1_type -20 488 10 30 69 0 0 chr4 62278869 62278927 -122009735 + AT_rich Low_complexity Low_complexity 1 58 0 1737 203 25 22 chr4 62279351 62279715 -122008947 - MLT1A1 LTR MaLR 0 365 1 206 340 0 64 chr4 62279845 62279939 -122008723 + L2 LINE L2 3225 3312 -1 21 0 0 0 chr4 62280012 62280033 -122008629 + AT_rich Low_complexity Low_complexity 1 21 0 22 94 0 0 chr4 62281152 62281216 -122007446 + AT_rich Low_complexity Low_complexity 1 64 0 21 71 0 0 chr4 62281359 62281401 -122007261 + AT_rich Low_complexity Low_complexity 1 42 0 234 116 0 0 chr4 62281933 62281976 -122006686 + (TG)n Simple_repeat Simple_repeat 1 43 0 414 340 26 26 chr4 62282524 62282715 -122005947 - MIR SINE MIR -67 195 5 2115 55 42 62 chr4 62283155 62283463 -122005199 - AluY SINE Alu -9 302 1 318 383 19 6 chr4 62283607 62283769 -122004893 - HAL1b LINE L1 -691 657 494 28 29 0 0 chr4 62284264 62284299 -122004363 + AT_rich Low_complexity Low_complexity 1 35 0 338 297 54 46 chr4 62284460 62284699 -122003963 - LTR33A LTR ERVL -40 483 243 33 0 0 0 chr4 62285212 62285245 -122003417 + AT_rich Low_complexity Low_complexity 1 33 0 484 316 58 22 chr4 62285895 62286120 -122002542 + L2 LINE L2 3076 3308 -5 448 290 142 0 chr4 62287095 62287257 -122001405 + MIR SINE MIR 74 258 -4 650 235 0 0 chr4 62287657 62287789 -122000873 + FLAM_C SINE Alu 1 132 -11 553 388 60 24 chr4 62287911 62288378 -122000284 + L3 LINE CR1 261 744 -833 208 262 76 116 chr4 62288465 62288690 -121999972 + L2 LINE L2 3087 3302 -11 3815 121 7 46 chr4 62289483 62290163 -121998499 + L1MA4A LINE L1 5644 6297 -6 826 280 28 20 chr4 62290604 62290854 -121997808 + MIR SINE MIR 8 259 -3 1413 225 32 44 chr4 62290971 62291380 -121997282 + LTR52 LTR ERVL 2 405 -16 26 30 0 0 chr4 62291766 62291799 -121996863 + AT_rich Low_complexity Low_complexity 1 33 0 322 247 25 0 chr4 62292307 62292388 -121996274 + MIR SINE MIR 153 235 -27 351 0 0 0 chr4 62292522 62292561 -121996101 + (CA)n Simple_repeat Simple_repeat 2 40 0 1975 136 10 0 chr4 62292651 62292960 -121995702 + AluSx SINE Alu 1 312 0 180 0 0 0 chr4 62295093 62295113 -121993549 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 1966 145 3 3 chr4 62295170 62295474 -121993188 - AluSx SINE Alu -8 304 1 330 113 0 0 chr4 62295429 62295489 -121993173 - Alu SINE Alu -257 45 1 22 103 0 0 chr4 62295825 62295903 -121992759 + AT_rich Low_complexity Low_complexity 1 78 0 25 0 0 0 chr4 62296297 62296322 -121992340 + AT_rich Low_complexity Low_complexity 1 25 0 29 70 0 0 chr4 62296428 62296485 -121992177 + AT_rich Low_complexity Low_complexity 1 57 0 290 164 0 16 chr4 62297761 62297822 -121990840 + (TATG)n Simple_repeat Simple_repeat 4 63 0 300 262 37 37 chr4 62297938 62298045 -121990617 - MER94 DNA DNA -18 116 10 2409 111 33 14 chr4 62298239 62298607 -121990055 - THE1C LTR MaLR 0 375 1 9937 120 31 22 chr4 62298607 62300172 -121988490 - THE1C-int LTR MaLR 0 1580 1 2425 124 8 16 chr4 62300172 62300550 -121988112 - THE1C LTR MaLR 0 375 1 250 297 36 58 chr4 62300770 62300908 -121987754 - L2 LINE L2 -21 3292 3158 22 35 0 0 chr4 62301857 62301886 -121986776 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 62302771 62302793 -121985869 + AT_rich Low_complexity Low_complexity 1 22 0 1221 280 32 8 chr4 62303041 62303634 -121985028 + L1M4 LINE L1 2240 2989 -3157 2115 266 70 19 chr4 62303639 62304530 -121984132 + L1M4 LINE L1 3510 4445 -1701 958 239 22 4 chr4 62304562 62304788 -121983874 + MLT1A1 LTR MaLR 104 333 -32 918 253 47 32 chr4 62304805 62305114 -121983548 + L1M4 LINE L1 4988 5320 -864 2152 88 10 7 chr4 62305114 62305410 -121983252 - AluY SINE Alu -14 297 1 918 253 47 32 chr4 62305410 62305620 -121983042 + L1M4 LINE L1 5320 5525 -659 24 0 0 0 chr4 62306335 62306359 -121982303 + AT_rich Low_complexity Low_complexity 1 24 0 536 305 73 61 chr4 62306544 62306888 -121981774 + MLT1A2 LTR MaLR 27 374 0 5255 116 12 27 chr4 62307070 62307933 -121980729 + L1PA13 LINE L1 5314 6163 0 785 126 13 82 chr4 62308913 62309072 -121979590 - MLT2B3 LTR ERVL -2 552 405 4682 121 9 5 chr4 62310199 62310945 -121977717 + L1PA14 LINE L1 5413 6161 0 4543 194 49 8 chr4 62311778 62313359 -121975303 - L1PA16 LINE L1 -4 6162 4518 21 71 0 0 chr4 62313487 62313529 -121975133 + AT_rich Low_complexity Low_complexity 1 42 0 244 98 0 39 chr4 62313788 62313839 -121974823 + (GGGAA)n Simple_repeat Simple_repeat 3 51 0 180 152 30 0 chr4 62314367 62314400 -121974262 - L2 LINE L2 -3 3310 3277 241 224 0 28 chr4 62314433 62314540 -121974122 + GA-rich Low_complexity Low_complexity 3 106 0 267 285 58 66 chr4 62314586 62314723 -121973939 - MIR SINE MIR -2 260 125 581 170 0 3 chr4 62315290 62315517 -121973145 + AluSx SINE Alu 7 311 0 313 247 22 22 chr4 62315556 62315645 -121973017 + MLT1F LTR MaLR 14 102 -440 435 193 147 67 chr4 62315828 62315978 -121972684 + MLT1A1 LTR MaLR 384 545 -4 200 303 67 34 chr4 62316001 62316090 -121972572 + MIR SINE MIR 66 157 -105 234 344 86 8 chr4 62316112 62316240 -121972422 - MIR SINE MIR -70 192 55 191 354 61 10 chr4 62318099 62318198 -121970464 - L2 LINE L2 -25 3247 3144 193 329 53 13 chr4 62318335 62318411 -121970251 - L2 LINE L2 -213 3059 2981 225 152 61 61 chr4 62319779 62319845 -121968817 + T-rich Low_complexity Low_complexity 6 71 0 212 57 0 29 chr4 62319973 62320008 -121968654 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 26792 38 2 0 chr4 62320008 62324064 -121964598 - L1PA3 LINE L1 -24 6131 2072 758 61 0 0 chr4 62324063 62324162 -121964500 + L1PA3 LINE L1 1965 2063 -4083 * 377 327 82 7 chr4 62324166 62324386 -121964276 + L2 LINE L2 2776 3271 -1 1756 315 96 33 chr4 62324684 62325669 -121962993 + L2 LINE L2 2033 3086 -227 295 241 58 23 chr4 62326164 62326251 -121962411 - MERVL LTR ERVL -660 4825 4736 277 245 128 58 chr4 62326389 62326577 -121962085 - MERVL LTR ERVL -728 4268 4068 966 162 29 48 chr4 62327465 62327675 -121960987 + Tigger7 DNA MER2_type 2263 2468 -119 445 303 114 58 chr4 62327891 62328304 -121960358 + L1ME3A LINE L1 2285 2720 -3426 293 277 29 7 chr4 62328317 62328454 -121960208 + L1ME3A LINE L1 2769 2908 -3238 354 313 58 44 chr4 62328524 62328956 -121959706 + L1ME3A LINE L1 3113 3550 -2596 278 108 216 27 chr4 62329010 62329084 -121959578 + L1MC1 LINE L1 6245 6332 -1 1137 75 0 0 chr4 62329125 62329285 -121959377 - L1PA13 LINE L1 0 6163 6004 538 309 213 13 chr4 62329300 62329987 -121958675 + L1ME3A LINE L1 4450 5273 -873 1159 204 44 106 chr4 62329995 62330728 -121957934 + MER52A LTR ERV1 531 716 -304 1816 188 31 39 chr4 62330833 62331248 -121957414 + MER52A LTR ERV1 1344 1755 0 875 294 62 71 chr4 62331251 62331676 -121956986 + L1ME3A LINE L1 5280 5707 -463 450 53 0 0 chr4 62331676 62331733 -121956929 + (TA)n Simple_repeat Simple_repeat 1 57 0 875 294 62 71 chr4 62331733 62332198 -121956464 + L1ME3A LINE L1 5707 6162 -8 340 275 197 6 chr4 62332560 62332738 -121955924 - L1ME LINE L1 -450 5671 5460 21 0 0 0 chr4 62333587 62333608 -121955054 + AT_rich Low_complexity Low_complexity 1 21 0 288 0 0 0 chr4 62333772 62333804 -121954858 + (TG)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr4 62334633 62334655 -121954007 + AT_rich Low_complexity Low_complexity 1 22 0 2323 101 0 0 chr4 62334743 62335049 -121953613 + AluSg SINE Alu 1 306 -4 372 309 141 48 chr4 62335186 62335753 -121952909 + HAL1 LINE L1 1121 1740 -767 29 84 0 0 chr4 62336067 62336138 -121952524 + AT_rich Low_complexity Low_complexity 1 71 0 264 169 45 39 chr4 62336148 62336326 -121952336 + (TA)n Simple_repeat Simple_repeat 2 180 0 1462 232 45 25 chr4 62336581 62336939 -121951723 - MLT2B3 LTR ERVL -185 369 5 21 0 0 0 chr4 62336952 62336973 -121951689 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 62338383 62338406 -121950256 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr4 62338506 62338528 -121950134 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 62339403 62339424 -121949238 + AT_rich Low_complexity Low_complexity 1 21 0 24373 156 19 13 chr4 62341053 62346548 -121942114 - L1PA8A LINE L1 -1 6445 854 1854 186 68 18 chr4 62346548 62346945 -121941717 - LTR2B LTR ERV1 0 490 74 3840 144 26 0 chr4 62346946 62347550 -121941112 - L1PA8A LINE L1 -5168 707 88 1034 121 0 12 chr4 62347591 62347756 -121940906 + AluSq SINE Alu 135 297 -16 22 35 0 0 chr4 62347792 62347821 -121940841 + AT_rich Low_complexity Low_complexity 1 29 0 2134 123 0 0 chr4 62348095 62348397 -121940265 + AluSc SINE Alu 1 302 -7 2306 103 0 0 chr4 62348865 62349176 -121939486 + AluY SINE Alu 1 311 0 524 285 43 62 chr4 62350034 62350410 -121938252 + L1MCa LINE L1 53 381 -5664 1632 279 35 56 chr4 62350497 62351567 -121937095 + L1MCa LINE L1 570 1628 -4851 1285 202 94 8 chr4 62351560 62351912 -121936750 + L1MC3 LINE L1 7389 7770 -15 * 2092 113 0 0 chr4 62351931 62352215 -121936447 + AluSx SINE Alu 1 284 -28 21 0 0 0 chr4 62352215 62352236 -121936426 + AT_rich Low_complexity Low_complexity 1 21 0 1763 313 90 53 chr4 62352655 62352835 -121935827 - L2 LINE L2 -34 3279 3107 3797 130 9 0 chr4 62352835 62353410 -121935252 + L1PA15 LINE L1 5583 6162 -3 1763 313 90 53 chr4 62353410 62354440 -121934222 - L2 LINE L2 -206 3107 2033 414 261 0 0 chr4 62354738 62354826 -121933836 - L2 LINE L2 -1 3271 3184 758 61 0 0 chr4 62354962 62355061 -121933601 - L1PA3 LINE L1 -4083 2063 1965 * 4711 31 0 0 chr4 62355060 62355637 -121933025 + L1PA3 LINE L1 2072 2648 -3498 10911 34 3 0 chr4 62355646 62357736 -121930926 + L1PA3 LINE L1 4073 6166 0 225 152 61 61 chr4 62357864 62357930 -121930732 + A-rich Low_complexity Low_complexity 6 71 0 193 329 53 13 chr4 62359298 62359374 -121929288 + L2 LINE L2 2981 3059 -213 198 343 61 10 chr4 62359511 62359610 -121929052 + L2 LINE L2 3144 3247 -25 21 0 0 0 chr4 62359613 62359634 -121929028 + AT_rich Low_complexity Low_complexity 1 21 0 12966 39 2 1 chr4 62360249 62362614 -121926048 - L1PA4 LINE L1 0 6155 3791 21 36 0 0 chr4 62362672 62362700 -121925962 + AT_rich Low_complexity Low_complexity 1 28 0 28 48 0 0 chr4 62363054 62363096 -121925566 + AT_rich Low_complexity Low_complexity 1 42 0 6818 69 6 8 chr4 62363128 62364030 -121924632 - L1PA6 LINE L1 -1 6153 5254 2158 86 20 26 chr4 62364136 62364485 -121924177 - L1P LINE L1 -764 5382 5036 * 5229 216 53 20 chr4 62364459 62364657 -121924005 - L1PB4 LINE L1 -25 6131 5941 2550 123 0 3 chr4 62364657 62365022 -121923640 - THE1B LTR MaLR 0 364 1 5229 216 53 20 chr4 62365022 62367216 -121921446 - L1PB4 LINE L1 -215 5941 3650 259 316 53 18 chr4 62367992 62368106 -121920556 + MLT1H LTR MaLR 3 120 -429 5095 42 11 3 chr4 62368907 62369543 -121919119 + L1PA5 LINE L1 5514 6154 0 1746 139 31 11 chr4 62369567 62369854 -121918808 + AluSx SINE Alu 12 304 -8 22 0 0 0 chr4 62369896 62369918 -121918744 + AT_rich Low_complexity Low_complexity 1 22 0 541 280 193 49 chr4 62371436 62372069 -121916593 - L2 LINE L2 -8 3305 2593 344 229 130 16 chr4 62372102 62372225 -121916437 + L1ME LINE L1 715 869 -5201 225 83 0 0 chr4 62372225 62372261 -121916401 + (TA)n Simple_repeat Simple_repeat 1 36 0 344 229 130 16 chr4 62372261 62372329 -121916333 + L1ME LINE L1 869 928 -5142 263 308 33 11 chr4 62372662 62372753 -121915909 + MIR SINE MIR 61 153 -109 751 322 51 42 chr4 62373434 62374161 -121914501 - L2 LINE L2 0 3313 2580 22 56 0 0 chr4 62374229 62374265 -121914397 + AT_rich Low_complexity Low_complexity 1 36 0 913 305 69 40 chr4 62374269 62374718 -121913944 - L2 LINE L2 -1382 1932 1471 336 240 20 30 chr4 62374728 62374828 -121913834 - MLT1G1 LTR MaLR -37 558 460 492 244 138 6 chr4 62375056 62375216 -121913446 - MLT1G1 LTR MaLR -412 183 3 987 234 26 30 chr4 62376013 62376282 -121912380 - MLT1E3 LTR MaLR 0 624 357 247 196 137 13 chr4 62376400 62376476 -121912186 - MLT1E1 LTR MaLR -403 221 111 304 248 176 24 chr4 62376480 62376605 -121912057 - MLT1E1 LTR MaLR -510 144 1 1203 188 18 0 chr4 62376760 62376989 -121911673 - L1MB1 LINE L1 -3 6165 5933 443 133 40 0 chr4 62376989 62377064 -121911598 + L1MB1 LINE L1 5855 5932 -251 319 227 92 8 chr4 62377597 62377716 -121910946 + L1MC3 LINE L1 6226 6354 -1431 294 262 83 0 chr4 62377722 62377806 -121910856 + MER58 DNA MER1_type 4 94 -2326 276 77 0 0 chr4 62377816 62377855 -121910807 + (CA)n Simple_repeat Simple_repeat 2 40 0 207 0 0 0 chr4 62377856 62377879 -121910783 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 1889 151 0 7 chr4 62377909 62378194 -121910468 - AluSg SINE Alu -27 283 1 421 218 0 0 chr4 62378250 62378328 -121910334 + MER58 DNA MER1_type 2343 2420 0 1974 228 102 94 chr4 62378328 62379120 -121909542 + L1MD3 LINE L1 6343 7128 -867 258 250 0 83 chr4 62379120 62379216 -121909446 + MLT1D LTR MaLR 38 125 -442 1974 228 102 94 chr4 62379216 62379357 -121909305 + L1MD3 LINE L1 7128 7266 -729 3077 111 28 61 chr4 62379357 62379934 -121908728 + L1MA3 LINE L1 5748 6305 0 1974 228 102 94 chr4 62379934 62380362 -121908300 + L1MD3 LINE L1 7266 7989 -6 1389 188 117 3 chr4 62381684 62381992 -121906670 + MLT1A1 LTR MaLR 21 363 -2 238 236 136 0 chr4 62382717 62382827 -121905835 + L1M4 LINE L1 3387 3511 -2635 473 0 0 17 chr4 62383916 62383974 -121904688 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 308 246 205 0 chr4 62384151 62384273 -121904389 + L1MEc LINE L1 750 896 -5500 361 325 94 22 chr4 62384357 62384634 -121904028 + L1MEc LINE L1 1129 1425 -4971 347 273 64 58 chr4 62384644 62384980 -121903682 + L1M4 LINE L1 3859 4201 -1945 1041 300 108 24 chr4 62385296 62386047 -121902615 - L1ME2 LINE L1 -85 6079 5266 215 202 83 0 chr4 62386047 62386156 -121902506 + (TA)n Simple_repeat Simple_repeat 2 119 0 445 175 9 9 chr4 62386486 62386600 -121902062 + CT-rich Low_complexity Low_complexity 3 116 0 1531 203 0 4 chr4 62386603 62386881 -121901781 + MLT1D LTR MaLR 245 505 0 2066 115 7 0 chr4 62387082 62387368 -121901294 + AluSx SINE Alu 1 288 -24 222 37 0 0 chr4 62387371 62387398 -121901264 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 450 90 0 0 chr4 62387532 62387599 -121901063 + L1PA13 LINE L1 6078 6144 -19 274 169 14 14 chr4 62387606 62387677 -121900985 + (TA)n Simple_repeat Simple_repeat 2 72 0 577 203 0 49 chr4 62387827 62387970 -121900692 - L1PB4 LINE L1 -2 6154 6019 22 0 0 0 chr4 62388088 62388110 -121900552 + AT_rich Low_complexity Low_complexity 1 22 0 403 392 19 5 chr4 62389422 62389631 -121899031 + MIR SINE MIR 41 252 -10 3456 87 6 29 chr4 62391271 62391791 -121896871 + L1PA8 LINE L1 5662 6169 -3 24 0 0 0 chr4 62391943 62391967 -121896695 + AT_rich Low_complexity Low_complexity 1 24 0 1922 161 7 0 chr4 62393136 62393538 -121895124 + AluSx SINE Alu 5 408 0 2167 123 0 3 chr4 62393542 62393851 -121894811 + AluSc SINE Alu 2 309 0 297 240 0 77 chr4 62393978 62394082 -121894580 - MIR SINE MIR -160 102 7 22 35 0 0 chr4 62394351 62394380 -121894282 + AT_rich Low_complexity Low_complexity 1 29 0 430 324 29 59 chr4 62394806 62395044 -121893618 + MIR SINE MIR 13 243 -19 254 221 130 13 chr4 62395056 62395133 -121893529 + MIR SINE MIR 4 89 -173 2152 133 0 0 chr4 62395153 62395446 -121893216 + AluSx SINE Alu 4 296 -16 525 303 120 6 chr4 62395543 62395718 -121892944 + MIR SINE MIR 52 246 -16 23 0 0 0 chr4 62396338 62396361 -121892301 + AT_rich Low_complexity Low_complexity 1 23 0 390 273 27 75 chr4 62396366 62396553 -121892109 - MER112 DNA MER1_type -81 179 2 25 51 0 0 chr4 62396833 62396872 -121891790 + AT_rich Low_complexity Low_complexity 1 39 0 1801 292 39 38 chr4 62396877 62397479 -121891183 - L1MEc LINE L1 -3614 2601 2001 2492 50 0 3 chr4 62397479 62397781 -121890881 - AluY SINE Alu -10 301 1 1801 292 39 38 chr4 62397781 62398772 -121889890 - L1MEc LINE L1 -4214 2001 1050 616 284 94 10 chr4 62398852 62399053 -121889609 - MER20 DNA MER1_type 0 219 2 23 0 0 0 chr4 62400037 62400060 -121888602 + AT_rich Low_complexity Low_complexity 1 23 0 1291 105 179 35 chr4 62400942 62401199 -121887463 + AluSg1 SINE Alu 2 295 -14 264 318 121 30 chr4 62401463 62401661 -121887001 - LTR33 LTR ERVL -305 216 1 259 221 84 21 chr4 62401676 62401771 -121886891 + MIR SINE MIR 123 223 -39 4911 263 60 41 chr4 62402004 62404270 -121884392 + L1MB8 LINE L1 7 2326 -4633 23 68 0 0 chr4 62404282 62404326 -121884336 + AT_rich Low_complexity Low_complexity 1 44 0 4154 218 33 26 chr4 62404335 62405533 -121883129 + L1MB8 LINE L1 4933 6160 -829 2531 65 0 0 chr4 62405533 62405842 -121882820 + AluY SINE Alu 1 309 -2 4154 218 33 26 chr4 62405842 62406669 -121881993 + L1MB8 LINE L1 6160 6980 -9 924 242 51 32 chr4 62408464 62408542 -121880120 + MSTD LTR MaLR 4 79 -317 207 0 0 0 chr4 62408542 62408565 -121880097 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1861 113 3 25 chr4 62408567 62408851 -121879811 - AluSg SINE Alu -32 278 1 924 242 51 32 chr4 62408851 62409127 -121879535 + MSTD LTR MaLR 79 392 -4 218 365 106 0 chr4 62409422 62409507 -121879155 + L2 LINE L2 3137 3230 -42 475 323 50 0 chr4 62410774 62410942 -121877720 + MIR SINE MIR 47 221 -41 21 36 0 0 chr4 62411453 62411481 -121877181 + AT_rich Low_complexity Low_complexity 1 28 0 558 289 56 45 chr4 62411665 62411952 -121876710 - L1ME3A LINE L1 -98 6072 5783 702 294 70 18 chr4 62412169 62412554 -121876108 + HAL1b LINE L1 205 609 -739 446 224 17 22 chr4 62412579 62412758 -121875904 + GA-rich Low_complexity Low_complexity 3 180 0 347 255 85 72 chr4 62412762 62412997 -121875665 + HAL1b LINE L1 603 840 -508 413 268 59 44 chr4 62413046 62413318 -121875344 + HAL1b LINE L1 933 1208 -140 305 309 30 30 chr4 62413294 62413459 -121875203 + L1ME4a LINE L1 5957 6121 0 * 35 0 0 0 chr4 62413934 62413969 -121874693 + AT_rich Low_complexity Low_complexity 1 35 0 337 246 123 64 chr4 62415208 62415411 -121873251 + LTR37B LTR ERV1 197 411 -57 309 232 81 40 chr4 62415495 62415594 -121873068 + L2 LINE L2 3208 3310 -3 985 208 69 22 chr4 62417681 62417912 -121870750 + L1MDa LINE L1 20 261 -6279 22 35 0 0 chr4 62419434 62419463 -121869199 + AT_rich Low_complexity Low_complexity 1 29 0 632 260 42 5 chr4 62420140 62420332 -121868330 - MER3 DNA MER1_type -6 203 5 1113 249 36 39 chr4 62420850 62421221 -121867441 - MLT2C1 LTR ERVL -31 632 1 546 323 78 16 chr4 62423004 62423323 -121865339 + L2 LINE L2 715 1053 -2261 396 273 58 52 chr4 62423561 62423715 -121864947 - MLT1I LTR MaLR -217 192 38 825 256 28 5 chr4 62423985 62424200 -121864462 + MER84 LTR ERVI 288 507 0 * 1775 236 44 92 chr4 62424200 62424802 -121863860 + MLT1E LTR MaLR 21 593 0 4989 197 55 5 chr4 62425129 62426264 -121862398 + L1MA5 LINE L1 3299 4490 -1656 2521 246 86 22 chr4 62426260 62427122 -121861540 + L1MA5 LINE L1 5357 6273 -27 * 7200 49 0 0 chr4 62427251 62428421 -121860241 - L1PA5 LINE L1 -5 6149 4980 629 39 0 0 chr4 62428421 62428499 -121860163 - L1PA5 LINE L1 -1124 5022 4945 202 354 106 50 chr4 62428563 62428724 -121859938 - L2 LINE L2 -7 3265 3096 433 226 66 17 chr4 62428793 62428974 -121859688 + L1M4 LINE L1 4415 4604 -1542 344 293 110 53 chr4 62429095 62429358 -121859304 + L1M4 LINE L1 4753 5030 -1116 223 395 29 5 chr4 62429604 62429814 -121858848 + L2 LINE L2 1492 1706 -1608 1405 259 105 88 chr4 62429841 62430762 -121857900 + L1M4c LINE L1 1 1876 -5154 3719 248 28 12 chr4 62430769 62431914 -121856748 + L1M4c LINE L1 2976 4143 -2963 1331 249 31 17 chr4 62431918 62432276 -121856386 + MLT1A1 LTR MaLR 1 363 -2 5875 237 75 38 chr4 62432282 62433954 -121854708 + MLT1A1-int LTR MaLR 2 1735 0 1877 202 17 14 chr4 62433954 62434252 -121854410 + MLT1A1 LTR MaLR 1 303 -62 2239 74 0 3 chr4 62434252 62434581 -121854081 - AluY SINE Alu 0 328 1 1877 202 17 14 chr4 62434581 62434638 -121854024 + MLT1A1 LTR MaLR 303 358 -7 1299 209 4 0 chr4 62434640 62434903 -121853759 + L1M4c LINE L1 4816 5079 -2027 284 158 12 110 chr4 62434905 62434987 -121853675 - MLT1A1 LTR MaLR -291 74 1 2561 173 34 8 chr4 62434987 62435375 -121853287 + L1MA9 LINE L1 5762 6169 -143 300 111 0 0 chr4 62435375 62435420 -121853242 + (CA)n Simple_repeat Simple_repeat 1 45 0 2561 173 34 8 chr4 62435420 62435563 -121853099 + L1MA9 LINE L1 6169 6307 -5 1100 319 81 70 chr4 62435582 62436643 -121852019 + L2 LINE L2 1700 2772 -542 992 234 0 5 chr4 62436713 62436914 -121851748 - MER58A DNA MER1_type -15 209 10 2143 97 3 3 chr4 62436955 62437263 -121851399 - AluY SINE Alu 0 311 4 490 330 143 13 chr4 62437266 62437581 -121851081 + L2 LINE L2 2938 3293 -20 545 319 16 81 chr4 62438785 62439108 -121849554 - L2 LINE L2 -427 2887 2586 231 61 0 61 chr4 62440810 62440859 -121847803 + (TCTCCC)n Simple_repeat Simple_repeat 3 48 0 363 135 0 15 chr4 62440880 62440952 -121847710 - MER41B LTR ERV1 -101 534 386 199 354 42 62 chr4 62441184 62441328 -121847334 + L2 LINE L2 2933 3073 -199 22 0 0 0 chr4 62441560 62441582 -121847080 + AT_rich Low_complexity Low_complexity 1 22 0 2327 210 32 58 chr4 62442796 62443015 -121845647 - L1 LINE L1 -957 5189 4966 1202 221 63 35 chr4 62443015 62443185 -121845477 - AluJb SINE Alu -7 295 112 203 0 0 36 chr4 62443185 62443213 -121845449 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1202 221 63 35 chr4 62443213 62443327 -121845335 - AluJb SINE Alu -190 112 3 2327 210 32 58 chr4 62443327 62443760 -121844902 - L1 LINE L1 -1180 4966 4554 791 215 44 13 chr4 62443759 62443987 -121844675 + L1MA10 LINE L1 5166 5400 -746 * 2742 201 37 113 chr4 62444113 62445084 -121843578 + L1MA10 LINE L1 5386 6282 -52 346 302 97 54 chr4 62445091 62445422 -121843240 + L1M4 LINE L1 3275 3619 -2527 2409 102 8 30 chr4 62445794 62445916 -121842746 + THE1A LTR MaLR 3 126 -229 2193 117 0 0 chr4 62445916 62446214 -121842448 - AluSx SINE Alu -14 298 1 2409 102 8 30 chr4 62446214 62446452 -121842210 + THE1A LTR MaLR 126 355 0 21 57 0 0 chr4 62446480 62446515 -121842147 + AT_rich Low_complexity Low_complexity 1 35 0 1475 110 58 142 chr4 62446579 62446888 -121841774 - AluSq SINE Alu -17 296 14 3231 104 53 6 chr4 62446888 62447376 -121841286 + MER9 LTR ERVK 1 511 0 345 336 16 0 chr4 62447921 62448043 -121840619 + GA-rich Low_complexity Low_complexity 2 125 0 204 125 0 0 chr4 62449407 62449439 -121839223 + (CATA)n Simple_repeat Simple_repeat 2 33 0 252 333 0 30 chr4 62450480 62450615 -121838047 - MLT1H LTR MaLR -317 232 102 3295 180 86 9 chr4 62450743 62451397 -121837265 - MER44D DNA MER2_type -1 704 1 742 353 23 38 chr4 62452008 62452402 -121836260 + LTR16B LTR ERVL 77 464 0 612 178 116 0 chr4 62452410 62452539 -121836123 + L1MB1 LINE L1 5946 6089 -100 1078 221 143 72 chr4 62452549 62453060 -121835602 + MER61E LTR ERV1 1 547 -22 562 226 85 12 chr4 62453154 62453318 -121835344 + L1MA10 LINE L1 6150 6325 -9 2042 95 3 7 chr4 62457171 62457465 -121831197 + AluY SINE Alu 2 294 -17 3243 211 35 30 chr4 62457993 62458311 -121830351 - L1 LINE L1 -1510 4636 4321 2086 130 0 0 chr4 62458311 62458604 -121830058 - AluSx SINE Alu -13 299 7 3243 211 35 30 chr4 62458604 62459121 -121829541 - L1 LINE L1 -1825 4321 3797 2450 227 27 14 chr4 62459121 62459755 -121828907 + L1MA9 LINE L1 4647 5288 -858 3286 224 25 24 chr4 62459764 62460607 -121828055 + L1MA9 LINE L1 5259 6102 -210 1832 198 111 59 chr4 62460699 62461404 -121827258 - LTR1B LTR ERV1 -39 981 1 393 260 17 85 chr4 62461404 62461581 -121827081 + L1MA9 LINE L1 6102 6266 -46 581 338 50 26 chr4 62461648 62461988 -121826674 - LTR16B LTR ERVL -24 440 93 648 379 8 0 chr4 62462425 62462686 -121825976 - HERVL LTR ERVL -1350 4414 4152 483 285 22 1 chr4 62462756 62462905 -121825757 - HERVL LTR ERVL -2451 2545 2384 3933 138 63 32 chr4 62462919 62463661 -121825001 - LTR1 LTR ERV1 -8 777 13 1386 298 50 45 chr4 62463723 62464370 -121824292 - HERVL LTR ERVL -2621 2375 1726 1188 213 14 4 chr4 62464391 62464668 -121823994 - L1MB3 LINE L1 -3 6180 5901 1698 178 63 27 chr4 62464686 62465222 -121823440 - L1MB3 LINE L1 -535 5648 5100 1762 214 33 23 chr4 62465255 62465647 -121823015 - LOR1b LTR ERV1 0 461 66 309 68 0 0 chr4 62465651 62465695 -121822967 + (CAA)n Simple_repeat Simple_repeat 2 45 0 603 136 0 0 chr4 62465724 62465812 -121822850 - LOR1b-int LTR ERV1 -3 8117 8030 * 1877 84 36 7 chr4 62465811 62466086 -121822576 - LOR1-int LTR ERV1 -2056 6064 5782 * 24228 152 51 52 chr4 62466064 62469005 -121819657 - LOR1-int LTR ERV1 -2594 5526 2595 1896 124 32 7 chr4 62469005 62469288 -121819374 - AluSg SINE Alu -19 291 2 24228 152 51 52 chr4 62469288 62471852 -121816810 - LOR1-int LTR ERV1 -5525 2595 29 1997 107 34 56 chr4 62471853 62472208 -121816454 - THE1B LTR MaLR -16 348 2 2303 155 3 0 chr4 62472209 62472584 -121816078 + L1PA16 LINE L1 5788 6163 -3 2365 220 41 3 chr4 62472587 62473178 -121815484 - L1MB3 LINE L1 -1073 5073 4461 1223 365 90 35 chr4 62473270 62474499 -121814163 - HERVL LTR ERVL -3420 1576 280 21 0 0 0 chr4 62474613 62474634 -121814028 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 62474747 62474776 -121813886 + AT_rich Low_complexity Low_complexity 1 29 0 31 26 0 0 chr4 62474833 62474871 -121813791 + AT_rich Low_complexity Low_complexity 1 38 0 29 0 0 0 chr4 62475104 62475133 -121813529 + AT_rich Low_complexity Low_complexity 1 29 0 227 333 35 0 chr4 62475252 62475339 -121813323 + GA-rich Low_complexity Low_complexity 3 92 0 1582 172 164 16 chr4 62475536 62475909 -121812753 + MSTA LTR MaLR 1 428 0 21 36 0 0 chr4 62476164 62476192 -121812470 + AT_rich Low_complexity Low_complexity 1 28 0 29 47 0 0 chr4 62476297 62476340 -121812322 + AT_rich Low_complexity Low_complexity 1 43 0 215 296 0 19 chr4 62477672 62477726 -121810936 - MIR SINE MIR -4 258 206 2191 102 3 3 chr4 62478032 62478336 -121810326 - AluSp SINE Alu -9 304 1 253 312 32 2 chr4 62479269 62479435 -121809227 + LTR67 LTR ERVL 6 213 -344 21 0 0 0 chr4 62479571 62479592 -121809070 + AT_rich Low_complexity Low_complexity 1 21 0 773 232 32 16 chr4 62479599 62479784 -121808878 + MER5A DNA MER1_type 2 189 0 860 256 99 69 chr4 62480613 62481100 -121807562 + MLT1H LTR MaLR 1 545 -4 1975 133 13 7 chr4 62481646 62481948 -121806714 - AluSq SINE Alu -9 304 1 23 54 0 0 chr4 62482088 62482125 -121806537 + AT_rich Low_complexity Low_complexity 1 37 0 321 272 48 41 chr4 62482159 62482306 -121806356 - L2 LINE L2 -17 3296 3149 703 347 77 52 chr4 62482357 62482795 -121805867 - L2 LINE L2 -162 3151 2696 1681 203 25 11 chr4 62482795 62483155 -121805507 + MLT1A1 LTR MaLR 1 365 0 703 347 77 52 chr4 62483155 62483413 -121805249 - L2 LINE L2 -617 2696 2446 7189 52 0 0 chr4 62483462 62484675 -121803987 - L1PA5 LINE L1 0 6154 4945 216 348 106 50 chr4 62484739 62484900 -121803762 - L2 LINE L2 -7 3265 3096 440 220 60 16 chr4 62484969 62485151 -121803511 + L1ME3A LINE L1 4415 4604 -1542 249 296 118 7 chr4 62485400 62485535 -121803127 + L1ME3A LINE L1 4881 5030 -1116 22 88 0 0 chr4 62485650 62485707 -121802955 + AT_rich Low_complexity Low_complexity 1 57 0 369 298 44 13 chr4 62485707 62485865 -121802797 + L1ME3A LINE L1 5152 5314 -832 303 200 13 0 chr4 62485928 62486003 -121802659 + L1ME3A LINE L1 5374 5449 -721 1009 288 24 16 chr4 62486047 62486429 -121802233 + L1ME3A LINE L1 5567 5951 -219 26 30 0 0 chr4 62486889 62486922 -121801740 + AT_rich Low_complexity Low_complexity 1 33 0 2664 245 25 2 chr4 62487079 62487715 -121800947 + MER82 DNA MER2_type 2 652 -1 998 99 0 0 chr4 62488114 62488245 -121800417 - AluSq SINE Alu -144 169 39 211 27 27 27 chr4 62488247 62488284 -121800378 + (TTTTC)n Simple_repeat Simple_repeat 3 39 0 1667 150 25 0 chr4 62488290 62488564 -121800098 - AluJb SINE Alu -3 309 29 226 129 0 0 chr4 62488620 62488651 -121800011 - AluJb SINE Alu -269 33 3 438 145 53 0 chr4 62488653 62488729 -121799933 - L1P4 LINE L1 -379 5786 5707 345 326 34 55 chr4 62488737 62488973 -121799689 - L1ME LINE L1 -5608 462 232 281 321 112 0 chr4 62489360 62489556 -121799106 - L1ME LINE L1 -390 5731 5514 296 366 49 24 chr4 62490152 62490357 -121798305 - L2 LINE L2 -190 3082 2873 361 315 113 27 chr4 62490378 62490600 -121798062 - MIR SINE MIR -21 241 1 246 323 31 31 chr4 62491047 62491143 -121797519 + MIR SINE MIR 20 115 -147 347 327 42 70 chr4 62491582 62491894 -121796768 - L1ME LINE L1 -302 5819 5517 185 182 18 0 chr4 62492348 62492403 -121796259 + (TA)n Simple_repeat Simple_repeat 1 56 0 21 36 0 0 chr4 62492545 62492573 -121796089 + AT_rich Low_complexity Low_complexity 1 28 0 300 102 0 0 chr4 62492989 62493038 -121795624 + (TC)n Simple_repeat Simple_repeat 2 50 0 324 83 0 0 chr4 62493040 62493088 -121795574 + (CA)n Simple_repeat Simple_repeat 1 48 0 298 212 30 10 chr4 62494487 62494586 -121794076 + (TA)n Simple_repeat Simple_repeat 2 102 0 206 128 43 0 chr4 62495485 62495532 -121793130 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 1945 101 11 0 chr4 62495751 62496037 -121792625 + L1PA13 LINE L1 5875 6163 0 181 258 11 11 chr4 62496082 62496171 -121792491 + (TA)n Simple_repeat Simple_repeat 1 89 0 21 0 0 0 chr4 62496218 62496239 -121792423 + AT_rich Low_complexity Low_complexity 1 21 0 192 135 0 0 chr4 62496383 62496420 -121792242 + (GA)n Simple_repeat Simple_repeat 1 37 0 1338 241 17 23 chr4 62496420 62496769 -121791893 - MLT2C1 LTR ERVL -48 349 3 2552 269 71 51 chr4 62496801 62498527 -121790135 - L1MC4 LINE L1 -100 7708 6106 870 254 74 40 chr4 62498559 62499003 -121789659 - L1MC4 LINE L1 -1802 6006 5548 2250 29 4 0 chr4 62499262 62499534 -121789128 - L1P LINE L1 -2137 4009 3737 6260 44 0 3 chr4 62499534 62500296 -121788366 + L1PA5 LINE L1 5384 6146 -8 31 0 0 0 chr4 62500296 62500327 -121788335 + AT_rich Low_complexity Low_complexity 1 31 0 556 311 66 77 chr4 62500571 62501040 -121787622 + L1M4c LINE L1 992 1455 -4929 612 227 13 0 chr4 62501046 62501196 -121787466 + L1P4 LINE L1 5067 5218 -928 552 110 181 55 chr4 62501213 62501250 -121787412 + L1P4 LINE L1 5331 5362 -804 1578 209 3 7 chr4 62501250 62501556 -121787106 + AluJb SINE Alu 4 308 -4 552 110 181 55 chr4 62501556 62501645 -121787017 + L1P4 LINE L1 5362 5473 -693 5060 80 1 6 chr4 62501645 62502334 -121786328 - L1PA8 LINE L1 -11 6161 5476 256 292 15 0 chr4 62502341 62502406 -121786256 - MLT1J LTR MaLR -154 357 292 275 178 22 0 chr4 62502443 62502488 -121786174 - LTR16A1 LTR ERVL -338 119 74 28085 33 1 0 chr4 62502516 62506701 -121781961 - L1PA4 LINE L1 -8 6147 1958 3008 89 45 4 chr4 62506702 62507236 -121781426 - L1PA16 LINE L1 -679 5475 4930 946 195 17 14 chr4 62507232 62507866 -121780796 + L1PA16 LINE L1 5455 6137 -31 * 2089 133 0 0 chr4 62507866 62508160 -121780502 + AluSq SINE Alu 5 298 -15 946 195 17 14 chr4 62508160 62508193 -121780469 + L1PA16 LINE L1 6137 6168 0 316 332 48 18 chr4 62508189 62508520 -121780142 + L1MEc LINE L1 1435 1775 -4621 * 24 53 0 0 chr4 62508664 62508702 -121779960 + AT_rich Low_complexity Low_complexity 1 38 0 26 64 0 0 chr4 62508713 62508760 -121779902 + AT_rich Low_complexity Low_complexity 1 47 0 922 234 33 14 chr4 62509342 62509556 -121779106 - MER20 DNA MER1_type -1 218 1 607 303 145 0 chr4 62510683 62510917 -121777745 - LTR16A LTR ERVL -101 349 82 283 353 84 36 chr4 62511150 62511708 -121776954 - ERVL LTR ERVL -436 5328 4744 2229 122 0 3 chr4 62512265 62512577 -121776085 + AluSp SINE Alu 1 311 -2 631 225 80 119 chr4 62512661 62513013 -121775649 - MLT1C LTR MaLR 0 390 55 243 245 0 0 chr4 62513066 62513119 -121775543 - MER5A DNA MER1_type -1 188 136 1938 135 75 31 chr4 62513663 62514012 -121774650 - THE1B LTR MaLR 0 364 1 9618 134 27 37 chr4 62514012 62515608 -121773054 - THE1B-int LTR MaLR 0 1580 1 1484 143 59 37 chr4 62515712 62515984 -121772678 - THE1B LTR MaLR -86 278 1 225 236 18 0 chr4 62516216 62516271 -121772391 + MLT1J LTR MaLR 105 160 -351 2268 67 0 20 chr4 62517345 62517665 -121770997 - AluY SINE Alu 0 311 1 32 26 0 0 chr4 62518089 62518128 -121770534 + AT_rich Low_complexity Low_complexity 1 39 0 180 77 0 0 chr4 62518629 62518655 -121770007 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 390 290 19 0 chr4 62518774 62518881 -121769781 + MLT1A1 LTR MaLR 188 296 -69 1153 247 14 68 chr4 62518889 62519007 -121769655 + MLT1A1 LTR MaLR 21 144 -221 2364 158 41 2 chr4 62519007 62519419 -121769243 + MSTA LTR MaLR 1 428 0 1153 247 14 68 chr4 62519419 62519665 -121768997 + MLT1A1 LTR MaLR 144 365 0 39 60 0 0 chr4 62519790 62519857 -121768805 + AT_rich Low_complexity Low_complexity 1 67 0 213 311 113 19 chr4 62520193 62520299 -121768363 + L2 LINE L2 3195 3310 -3 10319 121 2 1 chr4 62521025 62522460 -121766202 - THE1C-int LTR MaLR -143 1437 1 436 152 0 0 chr4 62522460 62522526 -121766136 - THE1C LTR MaLR 0 375 310 233 29 29 0 chr4 62522666 62522700 -121765962 + (CA)n Simple_repeat Simple_repeat 2 36 0 1359 248 23 0 chr4 62522704 62523006 -121765656 - MLT2D LTR ERVL -97 317 9 1091 145 35 92 chr4 62523157 62523309 -121765353 - L1MCa LINE L1 -4499 1927 1768 1525 200 7 10 chr4 62523309 62523599 -121765063 - AluSx SINE Alu -23 289 1 1842 171 3 16 chr4 62523603 62523919 -121764743 - AluSx SINE Alu 0 312 1 1091 145 35 92 chr4 62523919 62524104 -121764558 - L1MCa LINE L1 -4661 1765 1526 5491 216 67 16 chr4 62524120 62525460 -121763202 - L1MCa LINE L1 -4998 1428 21 189 0 0 0 chr4 62525828 62525849 -121762813 + (TA)n Simple_repeat Simple_repeat 1 21 0 37 0 0 0 chr4 62525994 62526031 -121762631 + AT_rich Low_complexity Low_complexity 1 37 0 2433 68 0 0 chr4 62528435 62528730 -121759932 - AluY SINE Alu -14 297 3 506 228 0 24 chr4 62528959 62529082 -121759580 - FLAM_A SINE Alu -3 139 20 2219 166 38 33 chr4 62531564 62531986 -121756676 + MSTB LTR MaLR 1 424 -2 302 276 39 64 chr4 62532745 62532901 -121755761 + MER46C DNA MER2_type 179 330 -8 5254 178 24 37 chr4 62533003 62534213 -121754449 - L1MA3 LINE L1 0 6305 5136 1458 180 32 36 chr4 62534213 62534491 -121754171 + AluJo SINE Alu 6 282 -30 5254 178 24 37 chr4 62534491 62535339 -121753323 - L1MA3 LINE L1 -1169 5136 4279 21 36 0 0 chr4 62535709 62535737 -121752925 + AT_rich Low_complexity Low_complexity 1 28 0 200 274 167 20 chr4 62536189 62536291 -121752371 + L2 LINE L2 3197 3313 0 2068 150 0 6 chr4 62536570 62536883 -121751779 - AluSx SINE Alu -1 311 1 262 359 134 14 chr4 62537147 62537370 -121751292 - MIR SINE MIR 0 262 13 893 245 95 0 chr4 62537814 62538055 -121750607 + MER90 LTR ERV1 335 598 -16 23 68 0 0 chr4 62539076 62539120 -121749542 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr4 62539254 62539277 -121749385 + AT_rich Low_complexity Low_complexity 1 23 0 2944 215 37 52 chr4 62539550 62540516 -121748146 + L1 LINE L1 2547 3498 -2648 2849 166 0 2 chr4 62540533 62541020 -121747642 - L1PA15 LINE L1 -7 6158 5673 6362 130 12 5 chr4 62541024 62542862 -121745800 - L1PA8 LINE L1 -3 6169 4323 4729 205 40 10 chr4 62542863 62543228 -121745434 - L1PA15 LINE L1 -507 5658 5305 1703 149 95 17 chr4 62543228 62543576 -121745086 + THE1C LTR MaLR 1 375 0 9024 150 41 7 chr4 62543577 62545104 -121743558 + THE1C-int LTR MaLR 2 1580 0 1887 157 64 14 chr4 62545104 62545461 -121743201 + THE1C LTR MaLR 1 375 0 4729 205 40 10 chr4 62545461 62546567 -121742095 - L1PA15 LINE L1 -859 5306 4142 7956 231 13 15 chr4 62546583 62548609 -121740053 + L1P LINE L1 2047 4067 -2079 2425 209 36 4 chr4 62548603 62549153 -121739509 - L1MB1 LINE L1 -57 6132 5565 * 7718 170 30 14 chr4 62551317 62552777 -121735885 + L1PA8A LINE L1 2 1492 -4734 6106 56 146 76 chr4 62552777 62553872 -121734790 - MER11A LTR ERVK 0 1266 1 14013 144 22 6 chr4 62553872 62556625 -121732037 + L1PA8A LINE L1 1467 5025 -1436 6227 95 8 15 chr4 62556595 62557680 -121730982 + L1PA8A LINE L1 5357 6438 -4 * 279 0 0 0 chr4 62557680 62557711 -121730951 + (CA)n Simple_repeat Simple_repeat 2 32 0 979 197 134 13 chr4 62557743 62557982 -121730680 + MLT1B LTR MaLR 96 363 -27 421 333 66 20 chr4 62558003 62558306 -121730356 + HERV16 LTR ERVL 2663 2956 -2040 444 358 47 59 chr4 62558417 62559158 -121729504 + HERV16 LTR ERVL 3131 3862 -1792 7574 235 59 9 chr4 62560174 62562607 -121726055 + L1MA5 LINE L1 3347 5909 -1656 2476 246 86 22 chr4 62562603 62563465 -121725197 + L1MA5 LINE L1 6776 7692 -27 * 4593 29 9 2 chr4 62563594 62564146 -121724516 - L1PA4 LINE L1 -1 6154 5599 382 298 78 97 chr4 62564260 62564746 -121723916 + LTR67 LTR ERVL 81 557 0 245 321 99 19 chr4 62564797 62564959 -121723703 + L2 LINE L2 2440 2614 -700 438 269 58 62 chr4 62565586 62566021 -121722641 - L1M4 LINE L1 -2588 3558 3126 243 368 118 25 chr4 62566587 62566908 -121721754 - MLT1J LTR MaLR -153 358 8 42181 36 25 1 chr4 62566962 62572969 -121715693 + L1PA2 LINE L1 2 6155 0 387 310 94 30 chr4 62574238 62574535 -121714127 - L1MC5 LINE L1 -220 7741 7426 235 287 49 21 chr4 62574634 62574777 -121713885 - L1MC4a LINE L1 -396 7412 7266 315 325 59 18 chr4 62574796 62574965 -121713697 - L1MC4 LINE L1 -786 7256 7081 238 268 39 91 chr4 62575038 62575269 -121713393 - L1MC5 LINE L1 -974 6987 6769 406 330 117 34 chr4 62575312 62575721 -121712941 - L1M4 LINE L1 -3303 2843 2401 28 48 0 0 chr4 62576041 62576083 -121712579 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr4 62576141 62576164 -121712498 + AT_rich Low_complexity Low_complexity 1 23 0 192 143 0 0 chr4 62576470 62576512 -121712150 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 258 214 36 0 chr4 62577460 62577516 -121711146 - MIR SINE MIR -8 254 197 2166 95 4 0 chr4 62577659 62577963 -121710699 - AluY SINE Alu 0 311 7 6009 92 15 6 chr4 62578672 62579540 -121709122 - L1PA8A LINE L1 -1 6130 5255 8385 135 28 2 chr4 62579546 62580934 -121707728 + L1PA8A LINE L1 3828 5251 -895 181 233 44 78 chr4 62581771 62581861 -121706801 - L2 LINE L2 -1343 1971 1885 2019 118 0 14 chr4 62583209 62583506 -121705156 - AluSg SINE Alu -17 293 1 21 0 0 0 chr4 62583510 62583531 -121705131 + AT_rich Low_complexity Low_complexity 1 21 0 311 0 26 0 chr4 62583535 62583574 -121705088 + (TA)n Simple_repeat Simple_repeat 1 40 0 1588 31 0 2 chr4 62584002 62584196 -121704466 - L1PA4 LINE L1 -188 5967 5776 198 0 0 0 chr4 62584206 62584228 -121704434 + (TAA)n Simple_repeat Simple_repeat 3 24 0 207 0 0 0 chr4 62584253 62584276 -121704386 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 339 276 63 35 chr4 62584334 62584588 -121704074 - L1MC5 LINE L1 -383 7578 7318 5206 189 37 18 chr4 62585007 62585688 -121702974 + L1PA16 LINE L1 4069 4736 -1430 2569 4 0 0 chr4 62585688 62585964 -121702698 + AluYa5 SINE Alu 33 308 -3 5206 189 37 18 chr4 62585964 62587344 -121701318 + L1PA16 LINE L1 4736 6166 0 22 0 0 0 chr4 62587438 62587460 -121701202 + AT_rich Low_complexity Low_complexity 1 22 0 1957 125 7 4 chr4 62588029 62588308 -121700354 + AluSq SINE Alu 2 281 -32 411 153 33 27 chr4 62588324 62588474 -121700188 + (TA)n Simple_repeat Simple_repeat 2 152 0 26 0 0 0 chr4 62588533 62588559 -121700103 + AT_rich Low_complexity Low_complexity 1 26 0 2033 126 3 76 chr4 62588611 62588688 -121699974 - MLT2A2 LTR ERVL 0 453 372 1991 166 0 0 chr4 62588688 62588984 -121699678 - AluSx SINE Alu -16 296 1 2033 126 3 76 chr4 62588984 62589262 -121699400 - MLT2A2 LTR ERVL -81 372 124 607 303 145 0 chr4 62590438 62590672 -121697990 - LTR16A LTR ERVL -101 349 82 283 353 84 36 chr4 62590905 62591463 -121697199 - ERVL LTR ERVL -436 5328 4744 365 105 0 0 chr4 62592020 62592077 -121696585 + Alu SINE Alu 1 57 -244 252 86 0 0 chr4 62592841 62592876 -121695786 + (A)n Simple_repeat Simple_repeat 1 35 0 351 0 0 0 chr4 62593158 62593197 -121695465 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 285 146 0 0 chr4 62594304 62594352 -121694310 + (CA)n Simple_repeat Simple_repeat 2 49 0 1110 196 103 34 chr4 62594354 62594675 -121693987 + MER2 DNA MER2_type 1 343 -1 300 186 0 0 chr4 62594776 62594835 -121693827 + (CATATA)n Simple_repeat Simple_repeat 1 59 0 186 103 0 0 chr4 62594838 62594867 -121693795 + (TG)n Simple_repeat Simple_repeat 2 30 0 3007 145 33 8 chr4 62594874 62595384 -121693278 - MER41B LTR ERV1 0 635 113 1002 103 55 0 chr4 62595388 62595533 -121693129 + MLT2A1 LTR ERVL 5 157 -287 436 72 29 0 chr4 62595536 62595605 -121693057 + (TA)n Simple_repeat Simple_repeat 1 71 0 31485 88 17 3 chr4 62595640 62600240 -121688422 + HERVL-A1 LTR ERVL 1 4718 -936 3216 71 117 21 chr4 62600237 62600652 -121688010 + HERVL-A1 LTR ERVL 4986 5454 -200 * 2196 107 3 0 chr4 62600652 62600952 -121687710 - AluSp SINE Alu -12 301 1 3216 71 117 21 chr4 62600952 62601015 -121687647 + HERVL-A1 LTR ERVL 5454 5510 -144 298 114 0 0 chr4 62601011 62601055 -121687607 + HERVL-A1 LTR ERVL 5611 5654 0 * 982 120 0 0 chr4 62601055 62601197 -121687465 + MLT2A1 LTR ERVL 1 142 -302 1918 82 60 30 chr4 62601197 62601465 -121687197 + AluY SINE Alu 19 294 -17 294 221 8 41 chr4 62601547 62601669 -121686993 + (TA)n Simple_repeat Simple_repeat 2 119 0 313 282 36 0 chr4 62602332 62602442 -121686220 + L1MB4 LINE L1 6066 6179 -1 704 139 0 0 chr4 62602682 62602790 -121685872 + MER84 LTR ERVI 1 108 -399 2004 132 20 23 chr4 62602790 62603132 -121685530 - THE1C LTR MaLR 0 375 35 1422 172 0 0 chr4 62603132 62603364 -121685298 + AluSg/x SINE Alu 67 298 -12 1968 150 42 31 chr4 62603389 62603749 -121684913 - THE1B LTR MaLR 0 364 1 2397 152 15 5 chr4 62603776 62604177 -121684485 + MER84 LTR ERVI 103 507 0 1836 232 43 92 chr4 62604177 62604780 -121683882 + MLT1E LTR MaLR 21 593 0 25 0 0 0 chr4 62606658 62606683 -121681979 + AT_rich Low_complexity Low_complexity 1 25 0 2186 187 13 47 chr4 62607987 62608521 -121680141 - L1MA9 LINE L1 0 7731 7216 186 43 0 0 chr4 62608805 62608828 -121679834 + (CATATA)n Simple_repeat Simple_repeat 2 24 0 8237 243 46 20 chr4 62608852 62612077 -121676585 - L1MA9 LINE L1 -536 7195 3836 640 175 102 44 chr4 62612098 62612235 -121676427 + LTR36 LTR ERV1 467 611 0 15174 225 25 14 chr4 62612311 62616366 -121672296 + L1PA15 LINE L1 1201 5346 -1470 1777 138 41 0 chr4 62616366 62616670 -121671992 + AluSg SINE Alu 3 317 0 15174 225 25 14 chr4 62616670 62618152 -121670510 + L1PA15 LINE L1 5346 6810 -6 1387 241 51 29 chr4 62618150 62618928 -121669734 - L1MA9 LINE L1 -3748 3817 3014 * 403 326 8 16 chr4 62618936 62619065 -121669597 - L1MA9 LINE L1 -5999 1497 1370 228 35 0 0 chr4 62619582 62619611 -121669051 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 25 0 0 0 chr4 62619907 62619932 -121668730 + AT_rich Low_complexity Low_complexity 1 25 0 198 337 84 12 chr4 62621336 62621419 -121667243 + MIR SINE MIR 58 146 -116 326 198 66 33 chr4 62622063 62622154 -121666508 - MER69 DNA AcHobo -217 2309 2216 609 283 82 0 chr4 62622526 62622710 -121665952 - MER69 DNA AcHobo -559 667 469 279 238 12 62 chr4 62623013 62623093 -121665569 - MER58A DNA MER1_type -30 77 2 204 156 16 31 chr4 62625689 62625753 -121662909 + CT-rich Low_complexity Low_complexity 2 64 0 268 80 0 40 chr4 62626270 62626320 -121662342 + (TTTC)n Simple_repeat Simple_repeat 3 50 0 1207 128 64 37 chr4 62626566 62626784 -121661878 + AluSg/x SINE Alu 78 301 -9 26 0 0 0 chr4 62627710 62627736 -121660926 + AT_rich Low_complexity Low_complexity 1 26 0 192 306 59 12 chr4 62628043 62628128 -121660534 - MIR SINE MIR -97 165 77 692 189 123 12 chr4 62629331 62629634 -121659028 + MLT1A2 LTR MaLR 8 374 0 2747 223 49 9 chr4 62629634 62630267 -121658395 + MLT1A2-int LTR MaLR 1 658 -1077 228 254 0 45 chr4 62630305 62630372 -121658290 + MLT1A2-int LTR MaLR 824 887 -484 401 276 0 83 chr4 62630427 62630572 -121658090 + MLT-int LTR MaLR 676 808 -927 2083 228 26 0 chr4 62630656 62631086 -121657576 + MLT1A2-int LTR MaLR 1294 1734 -1 1375 200 78 44 chr4 62631089 62631253 -121657409 + MLT1A2 LTR MaLR 3 160 -214 395 19 19 0 chr4 62631253 62631305 -121657357 + (TG)n Simple_repeat Simple_repeat 2 54 0 1375 200 78 44 chr4 62631305 62631500 -121657162 + MLT1A2 LTR MaLR 160 374 0 262 359 76 0 chr4 62632105 62632197 -121656465 + L2 LINE L2 3139 3237 -35 303 308 58 103 chr4 62632658 62632814 -121655848 - MIR SINE MIR -109 153 5 333 47 0 0 chr4 62634218 62634261 -121654401 + (TG)n Simple_repeat Simple_repeat 2 44 0 258 0 47 23 chr4 62634767 62634810 -121653852 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 451 285 107 73 chr4 62635899 62636309 -121652353 + MLT1J1 LTR MaLR 23 446 0 2338 134 28 14 chr4 62636824 62637183 -121651479 + THE1B LTR MaLR 1 364 0 624 297 73 0 chr4 62637677 62637896 -121650766 - MIR SINE MIR -1 261 27 267 217 60 114 chr4 62638294 62638460 -121650202 + MIR SINE MIR 38 194 -68 21 71 0 0 chr4 62638506 62638548 -121650114 + AT_rich Low_complexity Low_complexity 1 42 0 285 98 0 0 chr4 62639413 62639454 -121649208 + (TTTTC)n Simple_repeat Simple_repeat 4 44 0 2088 158 35 0 chr4 62639534 62639908 -121648754 - L1MB1 LINE L1 -78 6111 5725 4460 141 19 19 chr4 62639937 62640695 -121647967 - L1PB3 LINE L1 -2 6152 5395 1048 237 76 25 chr4 62641655 62641972 -121646690 - MLT1D LTR MaLR -159 346 14 506 251 145 38 chr4 62642148 62642383 -121646279 - MIR SINE MIR 0 262 3 1342 259 23 11 chr4 62642577 62642925 -121645737 + MSTB LTR MaLR 75 426 0 288 77 0 0 chr4 62643319 62643358 -121645304 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 264 179 18 0 chr4 62643970 62644026 -121644636 - MLT2B2 LTR ERVL 0 515 459 225 0 0 0 chr4 62644030 62644055 -121644607 + (TG)n Simple_repeat Simple_repeat 2 26 0 225 0 0 0 chr4 62644054 62644079 -121644583 + (TA)n Simple_repeat Simple_repeat 1 25 0 2930 112 0 24 chr4 62644223 62644680 -121643982 - L1PA12 LINE L1 -125 6043 5598 827 111 62 0 chr4 62644680 62644823 -121643839 + L1PA12 LINE L1 6016 6168 0 21 0 0 0 chr4 62645727 62645748 -121642914 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr4 62646138 62646166 -121642496 + AT_rich Low_complexity Low_complexity 1 28 0 35 71 0 0 chr4 62646563 62646633 -121642029 + AT_rich Low_complexity Low_complexity 1 70 0 21 36 0 0 chr4 62646880 62646908 -121641754 + AT_rich Low_complexity Low_complexity 1 28 0 1760 164 0 31 chr4 62647640 62647958 -121640704 + MER54B LTR ERVL 486 793 0 869 266 62 57 chr4 62648829 62649322 -121639340 + MLT1E LTR MaLR 3 590 -3 21 0 0 0 chr4 62650838 62650859 -121637803 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 62652574 62652603 -121636059 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 62653394 62653422 -121635240 + AT_rich Low_complexity Low_complexity 1 28 0 33 80 0 0 chr4 62653850 62653925 -121634737 + AT_rich Low_complexity Low_complexity 1 75 0 219 196 18 18 chr4 62653983 62654039 -121634623 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 22 0 0 0 chr4 62654352 62654374 -121634288 + AT_rich Low_complexity Low_complexity 1 22 0 243 266 45 50 chr4 62654777 62654976 -121633686 + L1ME LINE L1 5460 5657 -464 27 0 0 0 chr4 62656322 62656349 -121632313 + AT_rich Low_complexity Low_complexity 1 27 0 1960 167 8 3 chr4 62657093 62657447 -121631215 - L1PB4 LINE L1 -2 6154 5799 282 160 0 0 chr4 62657447 62657497 -121631165 + (CA)n Simple_repeat Simple_repeat 2 51 0 254 77 0 0 chr4 62657526 62657565 -121631097 + L1M2 LINE L1 5750 5788 -512 390 178 16 31 chr4 62657566 62657695 -121630967 + (TA)n Simple_repeat Simple_repeat 1 127 0 2706 191 17 15 chr4 62657707 62658618 -121630044 - L1PB4 LINE L1 -367 5789 4876 675 171 0 16 chr4 62658617 62658746 -121629916 + L1PB4 LINE L1 4739 4865 -1281 * 639 311 83 12 chr4 62659066 62659307 -121629355 - MIR SINE MIR 0 262 5 222 118 0 0 chr4 62659530 62659564 -121629098 + (TA)n Simple_repeat Simple_repeat 2 35 0 214 338 91 25 chr4 62660148 62660346 -121628316 + L2 LINE L2 2576 2786 -528 21 71 0 0 chr4 62660722 62660764 -121627898 + AT_rich Low_complexity Low_complexity 1 42 0 260 154 39 0 chr4 62661264 62661316 -121627346 + L2 LINE L2 3255 3308 -5 6498 184 17 6 chr4 62661984 62663302 -121625360 - L1 LINE L1 -1158 4988 3657 3029 159 10 18 chr4 62663305 62663903 -121624759 + L1MA5A LINE L1 5705 6297 0 282 291 13 31 chr4 62664141 62664337 -121624325 + L1M4c LINE L1 1502 1805 -4577 35 41 0 0 chr4 62664407 62664456 -121624206 + AT_rich Low_complexity Low_complexity 1 49 0 25 31 0 0 chr4 62664514 62664546 -121624116 + AT_rich Low_complexity Low_complexity 1 32 0 315 326 55 44 chr4 62664652 62665017 -121623645 + L1M4c LINE L1 2190 2558 -4005 24 0 0 0 chr4 62665311 62665335 -121623327 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr4 62665440 62665473 -121623189 + AT_rich Low_complexity Low_complexity 1 33 0 263 276 238 28 chr4 62665522 62665736 -121622926 + L2 LINE L2 2719 2977 -337 228 35 0 0 chr4 62665893 62665922 -121622740 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 22 0 0 0 chr4 62667341 62667363 -121621299 + AT_rich Low_complexity Low_complexity 1 22 0 3097 171 16 25 chr4 62668511 62669060 -121619602 + MLT2B3 LTR ERVL 2 545 -9 966 227 111 3 chr4 62669393 62669691 -121618971 - MER57A LTR ERV1 0 403 109 198 0 0 0 chr4 62669744 62669766 -121618896 + (TTTAA)n Simple_repeat Simple_repeat 5 26 0 3076 140 124 26 chr4 62670230 62670914 -121617748 - Tigger3(Golem) DNA MER2_type -2 3027 2277 476 255 49 0 chr4 62670905 62671007 -121617655 - Tigger3(Golem) DNA MER2_type -2921 108 2 * 282 374 92 6 chr4 62671456 62671619 -121617043 + MIR3 SINE MIR 17 193 -15 212 285 23 85 chr4 62671856 62671986 -121616676 + MIR SINE MIR 126 247 -15 1831 121 0 88 chr4 62672223 62672562 -121616100 + AluSg1 SINE Alu 1 309 0 330 288 94 35 chr4 62673187 62673357 -121615305 + LTR16A LTR ERVL 263 442 -8 27 29 0 0 chr4 62673513 62673547 -121615115 + AT_rich Low_complexity Low_complexity 1 34 0 2363 60 0 29 chr4 62674047 62674363 -121614299 + AluY SINE Alu 1 307 -4 185 0 40 0 chr4 62676710 62676735 -121611927 + (TTTTTA)n Simple_repeat Simple_repeat 5 30 0 952 290 87 11 chr4 62676751 62677455 -121611207 - L1MEc LINE L1 -3261 2954 2198 1310 234 73 27 chr4 62677460 62677864 -121610798 + MLT1C LTR MaLR 2 426 -41 382 319 138 18 chr4 62677906 62678188 -121610474 - L1MEc LINE L1 -4186 2210 1895 498 335 61 21 chr4 62678303 62678814 -121609848 - L1MEc LINE L1 -4582 1814 1284 436 290 15 45 chr4 62678923 62679114 -121609548 + MIR SINE MIR 15 202 -60 24 53 0 0 chr4 62679492 62679530 -121609132 + AT_rich Low_complexity Low_complexity 1 38 0 2035 111 34 0 chr4 62679974 62680271 -121608391 - AluSx SINE Alu -5 307 1 1428 183 65 0 chr4 62680272 62680551 -121608111 - MER2 DNA MER2_type -13 332 36 375 78 0 0 chr4 62680582 62680633 -121608029 + (TA)n Simple_repeat Simple_repeat 1 51 0 1428 214 13 51 chr4 62682134 62682508 -121606154 - MLT1A1 LTR MaLR 0 365 6 1672 154 55 15 chr4 62682916 62683259 -121605403 + L1MA8 LINE L1 5762 6118 -173 496 117 17 100 chr4 62683708 62683828 -121604834 - L1MA3 LINE L1 0 6305 6196 24 53 0 0 chr4 62683953 62683991 -121604671 + AT_rich Low_complexity Low_complexity 1 38 0 2896 100 7 131 chr4 62684213 62684598 -121604064 + L1P LINE L1 4723 5004 -1142 2437 80 0 0 chr4 62684598 62684909 -121603753 + AluY SINE Alu 1 311 0 2896 100 7 131 chr4 62684909 62685141 -121603521 + L1P LINE L1 5004 5263 -883 588 229 8 8 chr4 62685296 62685427 -121603235 - FLAM_A SINE Alu -1 141 11 928 113 7 7 chr4 62685894 62686044 -121602618 - L1MA5 LINE L1 -5 6295 6146 1795 194 50 14 chr4 62686365 62686788 -121601874 - L1MB1 LINE L1 -29 6139 5702 36 91 0 0 chr4 62686950 62687049 -121601613 + AT_rich Low_complexity Low_complexity 1 99 0 1455 142 0 0 chr4 62687114 62687333 -121601329 + AluSg/x SINE Alu 87 305 -5 194 377 36 14 chr4 62688486 62688624 -121600038 + L3 LINE CR1 243 383 -1194 2052 112 0 13 chr4 62688736 62689041 -121599621 - AluSg SINE Alu -9 301 1 22 35 0 0 chr4 62689278 62689307 -121599355 + AT_rich Low_complexity Low_complexity 1 29 0 1467 211 11 0 chr4 62689319 62689599 -121599063 + AluJo SINE Alu 8 290 -22 21 71 0 0 chr4 62689947 62689989 -121598673 + AT_rich Low_complexity Low_complexity 1 42 0 287 347 128 22 chr4 62690047 62690331 -121598331 + L2 LINE L2 2708 3028 -285 229 398 0 9 chr4 62690612 62690725 -121597937 - MIR SINE MIR -104 158 47 303 340 147 8 chr4 62691184 62691443 -121597219 + L1MB4 LINE L1 4578 4872 -1274 8541 45 5 1 chr4 62691497 62692567 -121596095 - L1PA5 LINE L1 -1393 4753 3680 7044 55 12 1 chr4 62692567 62694027 -121594635 + L1PA5 LINE L1 4728 6154 0 917 271 65 62 chr4 62694148 62694826 -121593836 + L1MEc LINE L1 599 1278 -5118 321 311 72 38 chr4 62694927 62695136 -121593526 - L2 LINE L2 -1235 2079 1864 235 197 0 28 chr4 62695619 62695690 -121592972 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 802 185 23 23 chr4 62698414 62698587 -121590075 + AluJo SINE Alu 89 261 -51 448 251 127 50 chr4 62698646 62698945 -121589717 - HAL1 LINE L1 -518 1989 1668 277 202 101 0 chr4 62699169 62699258 -121589404 + L1MB4 LINE L1 5034 5131 -1015 818 199 7 7 chr4 62699263 62699414 -121589248 - MSTD LTR MaLR 0 396 246 1226 142 21 21 chr4 62699414 62699647 -121589015 + LTR12 LTR ERV1 1 233 -481 378 230 10 0 chr4 62699713 62699813 -121588849 + LTR30 LTR ERV1 524 624 -98 659 168 34 8 chr4 62699813 62699932 -121588730 + LTR12 LTR ERV1 359 480 -234 819 167 209 29 chr4 62699934 62700144 -121588518 - MSTD LTR MaLR -148 248 1 2532 201 18 83 chr4 62700144 62700780 -121587882 + L1MB4 LINE L1 5139 5815 -365 21 0 0 0 chr4 62700780 62700801 -121587861 + AT_rich Low_complexity Low_complexity 1 21 0 2532 201 18 83 chr4 62700801 62700850 -121587812 + L1MB4 LINE L1 5815 5866 -314 315 113 0 0 chr4 62700850 62700903 -121587759 + (TA)n Simple_repeat Simple_repeat 1 53 0 2532 201 18 83 chr4 62700903 62701109 -121587553 + L1MB4 LINE L1 5866 5989 -191 382 135 14 0 chr4 62701125 62701199 -121587463 + L1MB4 LINE L1 6106 6180 0 21 0 0 0 chr4 62701228 62701249 -121587413 + AT_rich Low_complexity Low_complexity 1 21 0 2910 213 20 13 chr4 62701627 62702228 -121586434 + MER77 LTR ERV1 1 605 0 570 287 72 10 chr4 62702533 62702742 -121585920 + MIR SINE MIR 40 261 -1 1984 255 156 64 chr4 62703465 62704179 -121584483 - MER21B LTR ERV1 -66 865 19 319 227 15 0 chr4 62704204 62704270 -121584392 - MER21B LTR ERV1 -776 87 21 357 378 105 39 chr4 62704411 62705236 -121583426 + L2 LINE L2 2394 3272 0 30 77 0 0 chr4 62705438 62705503 -121583159 + AT_rich Low_complexity Low_complexity 1 65 0 23 0 0 0 chr4 62705747 62705770 -121582892 + AT_rich Low_complexity Low_complexity 1 23 0 519 236 19 0 chr4 62706649 62706755 -121581907 + MER58 DNA MER1_type 173 280 -2140 230 359 8 23 chr4 62707342 62707473 -121581189 - MLT1H LTR MaLR -376 173 45 1221 186 32 124 chr4 62707478 62707914 -121580748 + MSTD LTR MaLR 1 396 0 3781 281 38 68 chr4 62707916 62709623 -121579039 + MSTD-int LTR MaLR 2 1651 0 789 250 79 25 chr4 62709623 62709953 -121578709 + MSTD LTR MaLR 1 396 0 221 313 24 24 chr4 62711202 62711285 -121577377 - L2 LINE L2 -4 3268 3186 877 44 0 102 chr4 62711349 62711486 -121577176 - L1PA7 LINE L1 -3 6151 6029 22 0 0 0 chr4 62713842 62713864 -121574798 + AT_rich Low_complexity Low_complexity 1 22 0 1638 303 52 15 chr4 62714448 62715065 -121573597 + L1MEc LINE L1 29 668 -5728 * 2021 118 6 3 chr4 62715062 62715383 -121573279 + L1P LINE L1 4664 4985 -1161 424 250 40 53 chr4 62715451 62715603 -121573059 - L1MC4 LINE L1 -1172 6870 6721 396 283 200 0 chr4 62716005 62716150 -121572512 + MER5A DNA MER1_type 10 183 -6 519 260 0 16 chr4 62716165 62716292 -121572370 + MER5B DNA MER1_type 2 126 -52 182 271 42 0 chr4 62716715 62716763 -121571899 - MIR SINE MIR -152 110 61 357 265 83 30 chr4 62716871 62717003 -121571659 + L1PBa LINE L1 926 1064 -5799 6366 244 22 28 chr4 62717042 62718401 -121570261 + L1PBa LINE L1 2473 3821 -3041 2185 106 3 31 chr4 62718401 62718721 -121569941 + AluY SINE Alu 1 311 0 6366 244 22 28 chr4 62718721 62719620 -121569042 + L1PBa LINE L1 3821 4724 -2138 639 189 0 0 chr4 62719620 62719726 -121568936 - THE1B LTR MaLR 0 364 259 2413 164 7 7 chr4 62719836 62720244 -121568418 + MSTA LTR MaLR 1 408 -20 8232 201 17 6 chr4 62720256 62721888 -121566774 + MSTA-int LTR MaLR 1 1651 0 2089 183 62 2 chr4 62721888 62722292 -121566370 + MSTA LTR MaLR 1 428 0 530 225 28 78 chr4 62722292 62722449 -121566213 + L1 LINE L1 4222 4367 -1779 2366 63 0 6 chr4 62722449 62722765 -121565897 + L1PA8 LINE L1 5856 6169 -3 530 225 28 78 chr4 62722765 62722825 -121565837 + L1 LINE L1 4367 4428 -1718 * 1011 205 109 0 chr4 62722820 62723030 -121565632 + L1PB3 LINE L1 5919 6151 -3 1492 261 49 9 chr4 62723082 62723614 -121565048 + L1M4 LINE L1 2140 2692 -3454 295 189 0 0 chr4 62723644 62723697 -121564965 + L1MD1 LINE L1 5928 5980 -262 186 71 0 0 chr4 62724979 62725007 -121563655 + (A)n Simple_repeat Simple_repeat 1 28 0 183 42 0 0 chr4 62726478 62726502 -121562160 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr4 62726692 62726713 -121561949 + AT_rich Low_complexity Low_complexity 1 21 0 1904 106 3 18 chr4 62727649 62727932 -121560730 - AluSq SINE Alu -2 311 33 215 299 162 30 chr4 62728632 62728676 -121559986 + L2 LINE L2 3116 3153 -160 2432 18 0 0 chr4 62728676 62728949 -121559713 - AluYa5 SINE Alu 0 311 39 215 299 162 30 chr4 62728949 62729071 -121559591 + L2 LINE L2 3153 3304 -9 374 139 12 0 chr4 62729479 62729565 -121559097 + (TA)n Simple_repeat Simple_repeat 1 87 0 570 327 5 27 chr4 62729771 62729994 -121558668 + MIR SINE MIR 45 262 0 2428 65 7 0 chr4 62731102 62731410 -121557252 - AluY SINE Alu -1 310 1 219 114 0 0 chr4 62731602 62731637 -121557025 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr4 62731667 62731695 -121556967 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr4 62731740 62731770 -121556892 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 62732404 62732432 -121556230 + AT_rich Low_complexity Low_complexity 1 28 0 491 290 103 0 chr4 62733196 62733341 -121555321 + MIR SINE MIR 38 197 -65 754 331 41 12 chr4 62733676 62733996 -121554666 - LTR16A LTR ERVL -66 384 56 22 0 0 0 chr4 62734932 62734954 -121553708 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr4 62735007 62735031 -121553631 + AT_rich Low_complexity Low_complexity 1 24 0 208 297 103 55 chr4 62735680 62735845 -121552817 - MIR SINE MIR -7 255 83 211 266 0 31 chr4 62736024 62736088 -121552574 - MIR SINE MIR -122 140 79 28 0 0 0 chr4 62736160 62736188 -121552474 + AT_rich Low_complexity Low_complexity 1 28 0 667 210 60 0 chr4 62737127 62737294 -121551368 + MER53 DNA DNA 4 180 -9 296 162 95 135 chr4 62788774 62788922 -121499740 - HsTC2 DNA Tc2 0 1898 1757 466 312 7 13 chr4 62788992 62789146 -121499516 + MIR SINE MIR 89 241 -21 7173 107 14 4 chr4 62789473 62791233 -121497429 - L1PA7 LINE L1 -1 6153 4375 7026 113 11 0 chr4 62791333 62792323 -121496339 - L1PA7 LINE L1 -5135 1011 11 10805 200 69 6 chr4 62792331 62793203 -121495459 - L1PA13 LINE L1 -4558 2229 1413 252 0 0 0 chr4 62793203 62793231 -121495431 + (CAG)n Simple_repeat Simple_repeat 3 30 0 10805 200 69 6 chr4 62793231 62794454 -121494208 - L1PA13 LINE L1 -5374 1413 2 526 280 0 0 chr4 62794796 62794928 -121493734 + L1MC4 LINE L1 6481 6612 -1430 594 232 77 10 chr4 62794932 62795139 -121493523 + L1ME3A LINE L1 5730 5950 -220 1183 203 4 42 chr4 62795397 62795658 -121493004 + THE1A LTR MaLR 105 355 0 10827 122 11 4 chr4 62795658 62797211 -121491451 + THE1A-int LTR MaLR 1 1564 -16 221 322 0 0 chr4 62797259 62797318 -121491344 + L2 LINE L2 3209 3267 -5 260 271 0 0 chr4 62797322 62797392 -121491270 + GA-rich Low_complexity Low_complexity 3 72 0 1918 168 0 3 chr4 62797405 62797714 -121490948 + AluSx SINE Alu 1 308 -4 910 325 88 62 chr4 62797989 62798875 -121489787 + L2 LINE L2 915 1823 -1491 257 204 0 11 chr4 62798903 62798991 -121489671 + GA-rich Low_complexity Low_complexity 2 88 0 1268 270 111 11 chr4 62798992 62799500 -121489162 - MLT2F LTR ERVL -58 605 1 288 0 0 0 chr4 62800405 62800437 -121488225 + (TG)n Simple_repeat Simple_repeat 1 32 0 46 54 0 0 chr4 62800691 62800765 -121487897 + AT_rich Low_complexity Low_complexity 1 74 0 1526 253 74 39 chr4 62801184 62801687 -121486975 - MLT1E LTR MaLR -21 550 52 312 48 0 0 chr4 62802020 62802062 -121486600 + (CA)n Simple_repeat Simple_repeat 1 42 0 1550 232 87 5 chr4 62802347 62802727 -121485935 + MLT2B2 LTR ERVL 3 413 -102 22 35 0 0 chr4 62802969 62802998 -121485664 + AT_rich Low_complexity Low_complexity 1 29 0 238 268 62 52 chr4 62802998 62803095 -121485567 - MIR SINE MIR -5 257 160 251 275 33 22 chr4 62803210 62803301 -121485361 + MER21B LTR ERV1 1 92 -771 1796 265 95 40 chr4 62803306 62804034 -121484628 + MER21B LTR ERV1 44 811 -52 262 292 80 66 chr4 62804684 62804821 -121483841 + MIR SINE MIR 2 140 -122 337 350 10 0 chr4 62805162 62805262 -121483400 + LTR33 LTR ERVL 53 153 -368 289 291 143 30 chr4 62805901 62806104 -121482558 - L2 LINE L2 0 3313 3088 1096 231 96 45 chr4 62806246 62806579 -121482083 + MLT1A2 LTR MaLR 25 374 0 309 377 104 20 chr4 62806600 62807159 -121481503 - L2 LINE L2 -219 3053 2390 1797 211 35 84 chr4 62808421 62808971 -121479691 - LTR8 LTR ERV1 -153 538 16 679 318 66 28 chr4 62809025 62809823 -121478839 - L1MEc LINE L1 -4470 2093 1123 916 251 70 35 chr4 62810009 62810441 -121478221 - MER39 LTR ERV1 0 682 67 237 395 52 15 chr4 62810621 62810889 -121477773 - L1MEc LINE L1 -5968 595 318 22 88 0 0 chr4 62811107 62811164 -121477498 + AT_rich Low_complexity Low_complexity 1 57 0 2136 126 0 0 chr4 62811837 62812139 -121476523 - AluSg SINE Alu -8 302 1 2160 127 36 30 chr4 62812279 62812641 -121476021 - THE1B LTR MaLR 0 364 1 10070 117 57 7 chr4 62812641 62814146 -121474516 - THE1B-int LTR MaLR 0 1580 1 2070 138 36 30 chr4 62814146 62814508 -121474154 - THE1B LTR MaLR 0 364 1 234 386 92 7 chr4 62814572 62814725 -121473937 - L2 LINE L2 0 3272 3107 212 227 0 0 chr4 62814812 62814856 -121473806 - MIR SINE MIR -9 253 210 250 387 58 6 chr4 62814860 62815033 -121473629 + MIR SINE MIR 6 187 -75 409 283 73 4 chr4 62815150 62815324 -121473338 - L1ME3 LINE L1 -20 6150 5961 39 0 0 0 chr4 62815324 62815363 -121473299 + AT_rich Low_complexity Low_complexity 1 39 0 2089 28 16 0 chr4 62815383 62815638 -121473024 - L1HS LINE L1 0 6155 5897 25 51 0 0 chr4 62815638 62815677 -121472985 + AT_rich Low_complexity Low_complexity 1 39 0 5403 196 24 6 chr4 62815806 62816863 -121471799 + MSTA-int LTR MaLR 576 1651 0 2076 186 62 2 chr4 62816863 62817267 -121471395 + MSTA LTR MaLR 1 428 0 530 225 28 78 chr4 62817267 62817424 -121471238 + L1 LINE L1 4222 4367 -1779 2348 67 0 6 chr4 62817424 62817740 -121470922 + L1PA8 LINE L1 5856 6169 -3 530 225 28 78 chr4 62817740 62817800 -121470862 + L1 LINE L1 4367 4428 -1718 * 1011 205 109 0 chr4 62817795 62818005 -121470657 + L1PB3 LINE L1 5919 6151 -3 1492 261 49 9 chr4 62818057 62818589 -121470073 + L1M4 LINE L1 2140 2692 -3454 295 189 0 0 chr4 62818619 62818672 -121469990 + L1MD1 LINE L1 5928 5980 -262 186 71 0 0 chr4 62819956 62819984 -121468678 + (A)n Simple_repeat Simple_repeat 1 28 0 183 42 0 0 chr4 62821455 62821479 -121467183 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr4 62821669 62821690 -121466972 + AT_rich Low_complexity Low_complexity 1 21 0 1904 106 3 18 chr4 62822626 62822909 -121465753 - AluSq SINE Alu -2 311 33 215 299 162 30 chr4 62823609 62823653 -121465009 + L2 LINE L2 3116 3153 -160 2424 18 0 0 chr4 62823653 62823925 -121464737 - AluYa5 SINE Alu -1 310 39 215 299 162 30 chr4 62823925 62824047 -121464615 + L2 LINE L2 3153 3304 -9 338 132 13 0 chr4 62824452 62824528 -121464134 + (TA)n Simple_repeat Simple_repeat 1 77 0 547 330 18 18 chr4 62824734 62824952 -121463710 + MIR SINE MIR 45 262 0 2426 68 7 0 chr4 62826061 62826370 -121462292 - AluY SINE Alu 0 311 1 252 86 0 0 chr4 62826562 62826597 -121462065 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr4 62826627 62826655 -121462007 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr4 62826700 62826730 -121461932 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 62827364 62827392 -121461270 + AT_rich Low_complexity Low_complexity 1 28 0 491 290 103 0 chr4 62828156 62828301 -121460361 + MIR SINE MIR 38 197 -65 773 328 41 12 chr4 62828636 62828956 -121459706 - LTR16A LTR ERVL -66 384 56 22 0 0 0 chr4 62829892 62829914 -121458748 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr4 62829967 62829991 -121458671 + AT_rich Low_complexity Low_complexity 1 24 0 208 297 103 55 chr4 62830640 62830805 -121457857 - MIR SINE MIR -7 255 83 211 266 0 31 chr4 62830984 62831048 -121457614 - MIR SINE MIR -122 140 79 28 0 0 0 chr4 62831120 62831148 -121457514 + AT_rich Low_complexity Low_complexity 1 28 0 736 181 64 0 chr4 62832087 62832258 -121456404 + MER53 DNA DNA 4 185 -4 405 151 118 32 chr4 62834627 62834720 -121453942 - MLT1I LTR MaLR -5 404 304 227 293 13 13 chr4 62834882 62834957 -121453705 - L2 LINE L2 0 3313 3239 402 252 58 52 chr4 62834977 62835132 -121453530 - MER67D LTR ERV1 0 514 359 406 222 213 30 chr4 62835145 62835286 -121453376 - MER67C LTR ERV1 -255 406 251 7083 53 0 1 chr4 62835286 62836728 -121451934 - L1PA5 LINE L1 -3 6151 4706 2127 89 0 0 chr4 62837315 62837585 -121451077 - AluSc SINE Alu 0 309 40 399 81 0 126 chr4 62838072 62838183 -121450479 - L1PA5 LINE L1 -2475 3671 3575 396 0 0 0 chr4 62838689 62838733 -121449929 + (CA)n Simple_repeat Simple_repeat 2 45 0 27 62 0 0 chr4 62840230 62840278 -121448384 + AT_rich Low_complexity Low_complexity 1 48 0 1978 107 3 41 chr4 62840456 62840775 -121447887 - AluY SINE Alu -4 307 1 32 75 0 0 chr4 62840952 62841019 -121447643 + AT_rich Low_complexity Low_complexity 1 67 0 308 290 122 8 chr4 62841276 62841407 -121447255 - L1ME3A LINE L1 -265 5905 5760 1801 158 7 0 chr4 62841582 62841866 -121446796 - AluSx SINE Alu -26 286 1 2399 139 26 2 chr4 62841991 62842407 -121446255 - L1PA13 LINE L1 -14 6149 5724 255 338 31 25 chr4 62842459 62842619 -121446043 - L1ME3A LINE L1 -508 5656 5496 180 0 0 0 chr4 62842637 62842657 -121446005 + (TG)n Simple_repeat Simple_repeat 2 21 0 21 36 0 0 chr4 62842747 62842775 -121445887 + AT_rich Low_complexity Low_complexity 1 28 0 431 333 211 14 chr4 62842780 62843074 -121445588 + L2 LINE L2 578 929 -2385 21 82 0 0 chr4 62843089 62843138 -121445524 + AT_rich Low_complexity Low_complexity 1 49 0 812 258 75 24 chr4 62843195 62843490 -121445172 - L1MCb LINE L1 -5735 310 1 210 37 0 0 chr4 62843603 62843630 -121445032 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 435 312 23 55 chr4 62844202 62844420 -121444242 + Charlie8 DNA MER1_type 55 265 -2152 262 288 68 0 chr4 62845159 62845232 -121443430 - MIR SINE MIR -65 143 66 * 511 284 44 44 chr4 62845216 62845420 -121443242 + MIR SINE MIR 10 213 -49 1637 205 9 31 chr4 62845427 62845749 -121442913 + Tigger4(Zombi) DNA MER2_type 1 315 -2416 * 4251 126 35 33 chr4 62845748 62846138 -121442524 + Tigger4(Zombi) DNA MER2_type 2007 2400 -331 2470 48 3 6 chr4 62846138 62846449 -121442213 + AluY SINE Alu 1 310 -1 4251 126 35 33 chr4 62846449 62846782 -121441880 + Tigger4(Zombi) DNA MER2_type 2400 2731 0 23 54 0 0 chr4 62847371 62847408 -121441254 + AT_rich Low_complexity Low_complexity 1 37 0 325 317 193 39 chr4 62847664 62848259 -121440403 - L2 LINE L2 0 3313 2617 25 31 0 0 chr4 62848595 62848627 -121440035 + AT_rich Low_complexity Low_complexity 1 32 0 5559 68 16 0 chr4 62849301 62850032 -121438630 - L1PA8A LINE L1 -66 6065 5323 335 312 26 26 chr4 62850457 62850611 -121438051 - L1ME3A LINE L1 -2388 5420 5267 240 216 0 39 chr4 62851335 62851386 -121437276 - L2 LINE L2 -68 3245 3197 236 332 187 44 chr4 62851686 62852233 -121436429 - L2 LINE L2 -2523 791 147 384 88 0 0 chr4 62852233 62852290 -121436372 + (TG)n Simple_repeat Simple_repeat 2 58 0 236 332 187 44 chr4 62852290 62852351 -121436311 - L2 LINE L2 -3167 147 96 21 57 0 0 chr4 62852656 62852691 -121435971 + AT_rich Low_complexity Low_complexity 1 35 0 208 0 0 0 chr4 62853278 62853301 -121435361 + (TTTTG)n Simple_repeat Simple_repeat 1 115 0 505 252 8 0 chr4 62853301 62853415 -121435247 - FLAM_C SINE Alu -175 137 1 318 106 0 0 chr4 62853680 62853727 -121434935 + (CA)n Simple_repeat Simple_repeat 2 48 0 190 237 26 0 chr4 62853760 62853836 -121434826 + (CATATA)n Simple_repeat Simple_repeat 2 79 0 457 228 0 50 chr4 62854761 62854862 -121433800 + MER7A DNA MER2_type 1 94 -252 6054 87 5 0 chr4 62854862 62855663 -121432999 - L1PA7 LINE L1 -23 6131 5327 * 7778 88 16 1 chr4 62855655 62856744 -121431918 + L1P LINE L1 3633 4738 -1408 663 137 43 0 chr4 62856744 62856861 -121431801 + MER7A DNA MER2_type 62 183 -154 190 321 38 0 chr4 62857314 62857367 -121431295 + L2 LINE L2 3137 3191 -81 1084 128 19 0 chr4 62858997 62859153 -121429509 + AluSg/x SINE Alu 133 291 -21 1502 251 77 68 chr4 62860352 62860965 -121427697 + MLT1E3 LTR MaLR 7 624 0 24 0 0 0 chr4 62861488 62861512 -121427150 + AT_rich Low_complexity Low_complexity 1 24 0 2043 133 3 0 chr4 62862024 62862317 -121426345 + AluSx SINE Alu 1 294 -18 224 196 22 0 chr4 62862576 62862622 -121426040 - L2 LINE L2 -5 3308 3262 257 378 7 21 chr4 62863233 62863376 -121425286 + MIR SINE MIR 1 141 -121 21 36 0 0 chr4 62864028 62864056 -121424606 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr4 62864231 62864260 -121424402 + AT_rich Low_complexity Low_complexity 1 29 0 285 260 144 19 chr4 62866465 62866569 -121422093 - LTR33A LTR ERVL 0 523 407 313 303 200 6 chr4 62866689 62866864 -121421798 - LTR33A LTR ERVL -250 273 65 24 32 0 0 chr4 62867148 62867179 -121421483 + AT_rich Low_complexity Low_complexity 1 31 0 302 372 42 73 chr4 62867420 62867874 -121420788 + L2 LINE L2 2824 3263 -9 21 36 0 0 chr4 62869628 62869656 -121419006 + AT_rich Low_complexity Low_complexity 1 28 0 1543 167 3 44 chr4 62869773 62870066 -121418596 + AluJo SINE Alu 1 281 -31 23 0 0 0 chr4 62870364 62870387 -121418275 + AT_rich Low_complexity Low_complexity 1 23 0 1430 216 30 30 chr4 62870561 62870923 -121417739 + MLT1A1 LTR MaLR 4 365 0 221 292 62 0 chr4 62870923 62870988 -121417674 + L2 LINE L2 3244 3312 -1 22 94 0 0 chr4 62871191 62871255 -121417407 + AT_rich Low_complexity Low_complexity 1 64 0 27 73 0 0 chr4 62871952 62872007 -121416655 + AT_rich Low_complexity Low_complexity 1 55 0 314 241 193 7 chr4 62872061 62872206 -121416456 + MIR SINE MIR 86 257 -5 1397 193 10 34 chr4 62872283 62872579 -121416083 + AluJo SINE Alu 1 289 -23 436 229 142 75 chr4 62872600 62872840 -121415822 + HAL1 LINE L1 2057 2312 -195 301 360 44 0 chr4 62873710 62873846 -121414816 + MIR3 SINE MIR 67 208 0 327 244 134 24 chr4 62874754 62874918 -121413744 + L1MEc LINE L1 2032 2213 -4909 3970 191 37 49 chr4 62874933 62875790 -121412872 - MER21B LTR ERV1 -15 848 2 8201 85 3 4 chr4 62876023 62877948 -121410714 + L1PA7 LINE L1 4219 6154 0 21 0 0 0 chr4 62878073 62878094 -121410568 + AT_rich Low_complexity Low_complexity 1 21 0 451 277 103 114 chr4 62878232 62878813 -121409849 + L1MEc LINE L1 24 598 -5825 1007 271 79 32 chr4 62878820 62879285 -121409377 + L1MEc LINE L1 2263 2761 -4361 2035 124 34 48 chr4 62879285 62879664 -121408998 + THE1C LTR MaLR 2 375 0 1007 271 79 32 chr4 62879664 62879767 -121408895 + L1MEc LINE L1 2761 2858 -4264 618 290 55 19 chr4 62879761 62880178 -121408484 - L1M4 LINE L1 -1369 4777 4346 * 389 343 53 28 chr4 62880192 62880665 -121407997 - L1M4 LINE L1 -1842 4304 3820 209 98 24 0 chr4 62880725 62880766 -121407896 + (CA)n Simple_repeat Simple_repeat 2 43 0 322 195 12 0 chr4 62880796 62880878 -121407784 - L1M4 LINE L1 -2402 3744 3662 23 68 0 0 chr4 62883013 62883057 -121405605 + AT_rich Low_complexity Low_complexity 1 44 0 777 231 12 0 chr4 62883065 62883225 -121405437 + FRAM SINE Alu 6 167 -9 187 340 0 0 chr4 62884131 62884184 -121404478 - L2 LINE L2 -6 3307 3255 1657 180 28 6 chr4 62885422 62885749 -121402913 + L1MA3 LINE L1 5944 6277 -28 253 393 65 13 chr4 62886434 62886663 -121401999 - L2 LINE L2 -452 2862 2622 703 273 144 15 chr4 62886759 62887023 -121401639 + HERVL LTR ERVL 3173 3470 -2184 3488 196 54 102 chr4 62887023 62888065 -121400597 + Tigger6a DNA MER2_type 1 992 -91 314 235 74 25 chr4 62888849 62888930 -121399732 + LTR33A LTR ERVL 51 135 -388 255 294 15 0 chr4 62889366 62889434 -121399228 - L2 LINE L2 -1329 1985 1917 1794 263 27 15 chr4 62890260 62890739 -121397923 - MLT1D LTR MaLR 0 505 21 185 108 27 0 chr4 62891535 62891572 -121397090 + (CTA)n Simple_repeat Simple_repeat 1 38 0 25 51 0 0 chr4 62891599 62891638 -121397024 + AT_rich Low_complexity Low_complexity 1 39 0 6340 199 63 35 chr4 62891668 62891701 -121396961 - L1MA9 LINE L1 -38 6274 6243 189 107 0 0 chr4 62891701 62891729 -121396933 + (TA)n Simple_repeat Simple_repeat 1 28 0 6340 199 63 35 chr4 62891729 62894090 -121394572 - L1MA9 LINE L1 -69 6243 3791 6152 260 40 20 chr4 62894093 62896224 -121392438 - L1M4c LINE L1 -4516 2137 572 534 252 58 19 chr4 62896228 62896383 -121392279 - MIR SINE MIR -85 177 17 649 353 58 26 chr4 62897073 62897646 -121391016 + HAL1 LINE L1 118 708 -1799 208 265 12 12 chr4 62897878 62897961 -121390701 + (TA)n Simple_repeat Simple_repeat 2 84 0 3217 82 30 0 chr4 62897985 62898422 -121390240 - MLT2A2 LTR ERVL -2 451 2 1871 88 32 3 chr4 62898423 62898706 -121389956 - HERVL-A2 LTR ERVL 0 5654 5364 28942 97 5 10 chr4 62898806 62898947 -121389715 - HERVL-A2 LTR ERVL -489 5165 5025 2085 115 3 7 chr4 62898947 62899242 -121389420 - AluSx SINE Alu -13 299 6 28942 97 5 10 chr4 62899242 62902018 -121386644 - HERVL-A2 LTR ERVL -629 5025 2286 6276 115 35 23 chr4 62902018 62903076 -121385586 + MER11C LTR ERVK 1 1071 0 28942 97 5 10 chr4 62903076 62905353 -121383309 - HERVL-A2 LTR ERVL -3368 2286 1 3191 108 11 0 chr4 62905353 62905799 -121382863 - MLT2A2 LTR ERVL 0 453 3 343 354 56 14 chr4 62905799 62906084 -121382578 + HAL1 LINE L1 975 1271 -1236 963 167 6 44 chr4 62906091 62906271 -121382391 + U2 snRNA snRNA 1 173 -15 213 39 0 0 chr4 62906271 62906297 -121382365 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 408 311 17 28 chr4 62906371 62906548 -121382114 + MLT2C1 LTR ERVL 3 177 -220 240 122 0 0 chr4 62906824 62906865 -121381797 + (A)n Simple_repeat Simple_repeat 1 41 0 1814 218 16 66 chr4 62907014 62907131 -121381531 + MLT1C LTR MaLR 3 124 -343 3039 142 96 41 chr4 62907131 62907746 -121380916 + MER39B LTR ERV1 3 651 -2 1814 218 16 66 chr4 62907746 62908115 -121380547 + MLT1C LTR MaLR 124 465 -2 421 393 72 62 chr4 62908169 62908876 -121379786 + HAL1 LINE L1 1657 2370 -137 3378 209 21 25 chr4 62909342 62910200 -121378462 - L1MB7 LINE L1 -45 6375 5521 526 340 13 8 chr4 62910213 62910448 -121378214 - HERVL LTR ERVL -1607 4047 3812 454 257 54 61 chr4 62910454 62910576 -121378086 - L1MB7 LINE L1 -4038 2346 2225 330 26 0 0 chr4 62910576 62910615 -121378047 + (CA)n Simple_repeat Simple_repeat 1 39 0 454 257 54 61 chr4 62910615 62910810 -121377852 - L1MB7 LINE L1 -4159 2225 2030 2322 168 39 7 chr4 62910810 62911251 -121377411 - MSTB2 LTR MaLR -2 455 1 454 257 54 61 chr4 62911251 62911649 -121377013 - L1MB7 LINE L1 -4354 2030 1541 1718 238 38 5 chr4 62912246 62912616 -121376046 + MER74A LTR ERVL 122 503 -55 407 234 8 0 chr4 62912699 62912823 -121375839 + (TA)n Simple_repeat Simple_repeat 1 125 0 1746 153 6 6 chr4 62913608 62913921 -121374741 + AluSq SINE Alu 1 313 0 1441 324 14 5 chr4 62914073 62914502 -121374160 - LTR16A LTR ERVL 0 450 18 21 82 0 0 chr4 62914893 62914942 -121373720 + AT_rich Low_complexity Low_complexity 1 49 0 2209 120 0 0 chr4 62915401 62915710 -121372952 - AluSx SINE Alu -3 309 1 206 225 0 0 chr4 62916441 62916481 -121372181 + (ATG)n Simple_repeat Simple_repeat 2 41 0 21 0 0 0 chr4 62916824 62916845 -121371817 + AT_rich Low_complexity Low_complexity 1 21 0 182 192 19 0 chr4 62916847 62916899 -121371763 + (TA)n Simple_repeat Simple_repeat 1 53 0 2070 135 17 0 chr4 62917039 62917335 -121371327 + AluSg SINE Alu 1 301 -9 300 175 0 0 chr4 62917335 62917398 -121371264 + GA-rich Low_complexity Low_complexity 1 63 0 29799 52 2 0 chr4 62917539 62921328 -121367334 + L1P LINE L1 1091 4887 -1259 7814 207 26 15 chr4 62921326 62923150 -121365512 + L1PA13 LINE L1 1958 3802 -2344 * 5916 98 17 11 chr4 62923152 62924127 -121364535 + L1PA13 LINE L1 4712 5691 -472 1934 158 0 0 chr4 62924127 62924425 -121364237 + AluSx SINE Alu 1 298 -14 5916 98 17 11 chr4 62924425 62924901 -121363761 + L1PA13 LINE L1 5691 6163 0 4556 113 35 1 chr4 62924901 62925608 -121363054 + L1PA13 LINE L1 5423 6163 0 209 171 49 0 chr4 62925635 62925676 -121362986 + GA-rich Low_complexity Low_complexity 3 45 0 301 321 0 27 chr4 62925769 62925881 -121362781 + MER94 DNA DNA 9 117 -17 471 292 45 8 chr4 62925898 62926165 -121362497 - L1ME LINE L1 -635 5535 5259 34 24 0 0 chr4 62927771 62927812 -121360850 + AT_rich Low_complexity Low_complexity 1 41 0 35 41 0 0 chr4 62928464 62928513 -121360149 + AT_rich Low_complexity Low_complexity 1 49 0 253 305 12 12 chr4 62928513 62928595 -121360067 + (TCCA)n Simple_repeat Simple_repeat 4 85 0 268 266 32 24 chr4 62928603 62928727 -121359935 + HAL1b LINE L1 1178 1302 -46 413 19 19 0 chr4 62929117 62929171 -121359491 + (TG)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr4 62930650 62930671 -121357991 + AT_rich Low_complexity Low_complexity 1 21 0 298 279 61 7 chr4 62932630 62932777 -121355885 - L1MEd LINE L1 -4972 1147 993 21 36 0 0 chr4 62933415 62933443 -121355219 + AT_rich Low_complexity Low_complexity 1 28 0 347 332 88 25 chr4 62933447 62933685 -121354977 + MER102b DNA MER1_type 88 340 -1 335 341 50 22 chr4 62933817 62933999 -121354663 - MLT1J2 LTR MaLR 0 450 264 210 385 163 25 chr4 62934214 62934539 -121354123 + L2 LINE L2 2604 2973 -341 1468 212 20 3 chr4 62934690 62934987 -121353675 + AluJo SINE Alu 1 302 -10 22 56 0 0 chr4 62935168 62935204 -121353458 + AT_rich Low_complexity Low_complexity 1 36 0 383 344 40 44 chr4 62935345 62935572 -121353090 - L2 LINE L2 -1372 1942 1717 222 270 0 0 chr4 62935596 62935670 -121352992 + (TA)n Simple_repeat Simple_repeat 1 74 0 21 0 0 0 chr4 62935981 62936002 -121352660 + AT_rich Low_complexity Low_complexity 1 21 0 1121 240 22 60 chr4 62936017 62936430 -121352232 - MLT2C1 LTR ERVL 0 397 1 1939 138 0 35 chr4 62936680 62937064 -121351598 - AluSp SINE Alu 0 384 12 22 35 0 0 chr4 62937390 62937419 -121351243 + AT_rich Low_complexity Low_complexity 1 29 0 1359 192 127 15 chr4 62938989 62939242 -121349420 - L1MA9 LINE L1 -237 6075 5852 399 21 0 0 chr4 62939242 62939290 -121349372 + (TG)n Simple_repeat Simple_repeat 1 48 0 1928 156 0 0 chr4 62939293 62939588 -121349074 - AluSx SINE Alu -17 295 1 1359 192 127 15 chr4 62939588 62939668 -121348994 - L1MA9 LINE L1 -461 5851 5700 238 315 0 14 chr4 62940347 62940420 -121348242 - L2 LINE L2 0 3313 3242 23 33 0 0 chr4 62940528 62940558 -121348104 + AT_rich Low_complexity Low_complexity 1 30 0 29 84 0 0 chr4 62941814 62941885 -121346777 + AT_rich Low_complexity Low_complexity 1 71 0 270 0 0 0 chr4 62942921 62942951 -121345711 + (CA)n Simple_repeat Simple_repeat 2 31 0 257 219 104 10 chr4 62943037 62943133 -121345529 + L1MC4 LINE L1 6620 6724 -1318 2983 133 91 2 chr4 62944018 62944522 -121344140 - MER41B LTR ERV1 -86 549 1 2390 150 33 0 chr4 62944526 62944920 -121343742 - MER41B-int LTR ERV1 -4 5942 5536 * 6609 176 55 53 chr4 62944893 62945738 -121342924 - MER41B-int LTR ERV1 -708 5831 4989 643 184 0 0 chr4 62945738 62945847 -121342815 + FLAM_C SINE Alu 14 122 -21 6609 176 55 53 chr4 62945847 62947060 -121341602 - MER41B-int LTR ERV1 -1550 4989 3385 1178 187 5 5 chr4 62947060 62947263 -121341399 + AluJo SINE Alu 3 205 -107 745 165 8 0 chr4 62947264 62947385 -121341277 + AluJo/FRAM SINE Alu 161 282 -30 387 0 0 0 chr4 62947385 62947428 -121341234 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 289 163 105 12 chr4 62948153 62948239 -121340423 - L1MC4 LINE L1 -1337 6705 6612 375 41 0 0 chr4 62948538 62948587 -121340075 + (TG)n Simple_repeat Simple_repeat 2 50 0 238 323 47 39 chr4 62948754 62948881 -121339781 - L1MEd LINE L1 -5396 723 596 226 235 20 0 chr4 62950130 62950181 -121338481 + CT-rich Low_complexity Low_complexity 1 52 0 2377 212 24 2 chr4 62950350 62950802 -121337860 + MER70A LTR ERVL 1 462 -10 495 185 39 54 chr4 62950803 62950933 -121337729 + MER70A-int LTR ERVL 1 128 -4895 * 1408 229 24 0 chr4 62950922 62951280 -121337382 + MER70A-int LTR ERVL 255 666 -4357 * 2063 138 9 0 chr4 62951275 62951594 -121337068 + MER70A-int LTR ERVL 855 1176 -3847 3847 198 5 4 chr4 62951596 62952730 -121335932 + MER70A-int LTR ERVL 1619 2784 -2239 200 125 50 0 chr4 62954172 62954212 -121334450 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 195 371 0 10 chr4 62954864 62954961 -121333701 - MIR SINE MIR -89 119 24 2296 95 3 9 chr4 63056115 63056430 -121232232 + AluSq SINE Alu 1 313 0 255 319 129 0 chr4 63058922 63059038 -121229624 - MIR SINE MIR -79 183 53 24 53 0 0 chr4 63059891 63059929 -121228733 + AT_rich Low_complexity Low_complexity 1 38 0 193 258 34 56 chr4 63059946 63060035 -121228627 - MIR SINE MIR -56 206 120 24 0 0 0 chr4 63061934 63061958 -121226704 + AT_rich Low_complexity Low_complexity 1 24 0 227 222 37 62 chr4 63062877 63062958 -121225704 - L2 LINE L2 -8 3305 3227 1909 128 14 0 chr4 63063071 63063352 -121225310 - AluSp SINE Alu -28 285 1 24 32 0 0 chr4 63063361 63063392 -121225270 + AT_rich Low_complexity Low_complexity 1 31 0 28 29 0 0 chr4 63063892 63063927 -121224735 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr4 63064181 63064213 -121224449 + AT_rich Low_complexity Low_complexity 1 32 0 198 0 0 0 chr4 63064241 63064263 -121224399 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 3785 218 33 38 chr4 63064518 63065512 -121223150 - L1MD2 LINE L1 -1 6358 5370 257 0 30 0 chr4 63065925 63065958 -121222704 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 7321 21 1 1 chr4 63065958 63066818 -121221844 - L1PA3 LINE L1 -13 6142 5283 1347 185 0 34 chr4 63067276 63067541 -121221121 + AluJb SINE Alu 43 298 -14 207 138 69 0 chr4 63067580 63067638 -121221024 + A-rich Low_complexity Low_complexity 1 62 0 347 113 16 0 chr4 63071646 63071708 -121216954 + (TAAAA)n Simple_repeat Simple_repeat 2 64 0 1819 164 42 33 chr4 63072989 63073348 -121215314 - THE1C LTR MaLR -8 367 6 360 43 0 0 chr4 63073348 63073394 -121215268 + (TC)n Simple_repeat Simple_repeat 1 46 0 25 0 0 0 chr4 63073879 63073904 -121214758 + AT_rich Low_complexity Low_complexity 1 25 0 246 62 0 0 chr4 63074236 63074268 -121214394 + (CA)n Simple_repeat Simple_repeat 1 32 0 7292 212 102 24 chr4 63075766 63077394 -121211268 - MER52A LTR ERV1 0 1755 1 3302 117 43 8 chr4 63077395 63077906 -121210756 - MER52A-int LTR ERV1 -1 7090 6562 * 6205 150 14 7 chr4 63077898 63079038 -121209624 - MER52-int LTR ERV1 -3826 3265 2082 1027 240 161 23 chr4 63079046 63079447 -121209215 - MER52A LTR ERV1 -1213 542 2 207 235 59 0 chr4 63080124 63080175 -121208487 - L2 LINE L2 -2 3270 3217 209 262 148 33 chr4 63080459 63080581 -121208081 - MIR SINE MIR -5 257 122 343 356 38 0 chr4 63080583 63080715 -121207947 + L2 LINE L2 2888 3024 -289 276 253 35 11 chr4 63081492 63081579 -121207083 - MLT1K LTR MaLR -11 577 489 253 340 0 10 chr4 63081724 63081824 -121206838 - L2 LINE L2 -1172 2142 2044 247 358 0 0 chr4 63082037 63082104 -121206558 - MLT1K LTR MaLR -438 150 84 28 71 0 0 chr4 63082843 63082899 -121205763 + AT_rich Low_complexity Low_complexity 1 56 0 1746 153 88 28 chr4 63084044 63084398 -121204264 + THE1C LTR MaLR 1 375 0 364 222 67 11 chr4 63084769 63084859 -121203803 + MER88 LTR ERVL 79 173 -291 * 1375 244 102 29 chr4 63084781 63085231 -121203431 - MER74B LTR ERVL -74 548 66 6441 138 4 4 chr4 63086348 63087485 -121201177 + L1PA4 LINE L1 5018 6154 -1 404 283 36 18 chr4 63088786 63088952 -121199710 - L1ME LINE L1 -451 5670 5502 30 27 0 0 chr4 63088993 63089030 -121199632 + AT_rich Low_complexity Low_complexity 1 37 0 33 25 0 0 chr4 63089434 63089474 -121199188 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr4 63089668 63089691 -121198971 + AT_rich Low_complexity Low_complexity 1 23 0 1497 219 85 11 chr4 63090582 63090948 -121197714 - MER89 LTR ERV1 0 559 167 22 0 0 0 chr4 63091334 63091356 -121197306 + AT_rich Low_complexity Low_complexity 1 22 0 255 61 0 0 chr4 63092049 63092082 -121196580 + (TG)n Simple_repeat Simple_repeat 2 34 0 297 194 27 65 chr4 63092101 63092287 -121196375 + (TA)n Simple_repeat Simple_repeat 2 180 0 551 254 40 12 chr4 63092489 63092662 -121196000 - MER5B DNA MER1_type 0 178 1 783 304 4 12 chr4 63093385 63093628 -121195034 - MLT1A1 LTR MaLR -106 259 19 25 0 0 0 chr4 63093993 63094018 -121194644 + AT_rich Low_complexity Low_complexity 1 25 0 268 309 186 29 chr4 63094200 63094410 -121194252 - MIR SINE MIR -10 252 10 373 382 79 12 chr4 63094420 63094750 -121193912 - L1ME LINE L1 -497 5624 5273 358 302 47 35 chr4 63095665 63095837 -121192825 - MIR SINE MIR 0 262 89 21 0 0 0 chr4 63095879 63095900 -121192762 + AT_rich Low_complexity Low_complexity 1 21 0 216 67 0 0 chr4 63096001 63096031 -121192631 + (TG)n Simple_repeat Simple_repeat 1 30 0 23 68 0 0 chr4 63096056 63096100 -121192562 + AT_rich Low_complexity Low_complexity 1 44 0 226 204 0 0 chr4 63096498 63096542 -121192120 + GA-rich Low_complexity Low_complexity 3 46 0 799 223 99 0 chr4 63096580 63096782 -121191880 - MER58A DNA MER1_type -1 223 2 339 25 0 0 chr4 63099488 63099528 -121189134 + (TG)n Simple_repeat Simple_repeat 2 41 0 212 240 0 0 chr4 63099954 63100004 -121188658 + (TG)n Simple_repeat Simple_repeat 1 50 0 22 0 0 0 chr4 63103968 63103990 -121184672 + AT_rich Low_complexity Low_complexity 1 22 0 2038 127 0 3 chr4 63105317 63105617 -121183045 - AluSg SINE Alu -11 299 1 21 0 0 0 chr4 63105977 63105998 -121182664 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 63106564 63106592 -121182070 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 63107555 63107576 -121181086 + AT_rich Low_complexity Low_complexity 1 21 0 21 107 0 0 chr4 63108153 63108237 -121180425 + AT_rich Low_complexity Low_complexity 1 84 0 240 287 100 10 chr4 63108646 63108792 -121179870 - MIR SINE MIR -66 196 38 324 0 0 0 chr4 63109613 63109649 -121179013 + (TA)n Simple_repeat Simple_repeat 1 36 0 315 0 0 0 chr4 63109965 63110000 -121178662 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 406 362 81 4 chr4 63111854 63112089 -121176573 + MIR SINE MIR 10 262 0 238 250 154 10 chr4 63114029 63114133 -121174529 + L2 LINE L2 3195 3313 0 323 252 140 0 chr4 63114172 63114279 -121174383 + L2 LINE L2 3192 3313 0 23 33 0 0 chr4 63114548 63114578 -121174084 + AT_rich Low_complexity Low_complexity 1 30 0 455 333 68 17 chr4 63114649 63114883 -121173779 - MIR SINE MIR -2 260 15 1587 306 94 11 chr4 63114936 63115878 -121172784 - L2 LINE L2 0 3313 2282 389 276 38 0 chr4 63117182 63117287 -121171375 - MER5A DNA MER1_type -77 112 4 1062 207 4 23 chr4 63117447 63117708 -121170954 - L1MB1 LINE L1 0 6168 5913 230 291 147 44 chr4 63117932 63118152 -121170510 + MIR SINE MIR 5 249 -13 832 279 9 13 chr4 63121111 63121337 -121167325 - MIR SINE MIR -33 229 5 270 0 0 0 chr4 63121765 63121795 -121166867 + (TG)n Simple_repeat Simple_repeat 2 31 0 151 31 0 0 chr4 63121906 63122099 -121166563 + AT_rich Low_complexity Low_complexity 1 193 0 230 239 0 54 chr4 63122501 63122593 -121166069 + A-rich Low_complexity Low_complexity 5 91 0 226 219 0 0 chr4 63124010 63124051 -121164611 + polypurine Low_complexity Low_complexity 2 42 0 218 173 0 19 chr4 63124249 63124301 -121164361 + (TA)n Simple_repeat Simple_repeat 2 52 0 2086 141 0 0 chr4 63126184 63126483 -121162179 + AluSx SINE Alu 2 300 -12 320 322 0 0 chr4 63126490 63126580 -121162082 + L1MC4 LINE L1 6614 6703 -1339 249 264 0 0 chr4 63126781 63126853 -121161809 + (CATATA)n Simple_repeat Simple_repeat 1 72 0 234 70 0 0 chr4 63126855 63126898 -121161764 - LTR66 LTR ERVL -169 441 399 295 218 0 0 chr4 63128235 63128290 -121160372 - MIR SINE MIR -6 256 202 2116 56 0 3 chr4 63128695 63128981 -121159681 - L1P LINE L1 -778 5368 5084 394 276 113 36 chr4 63128999 63129274 -121159388 + L1M4 LINE L1 4938 5233 -913 234 224 45 0 chr4 63129391 63129458 -121159204 + L1M2 LINE L1 5362 5431 -860 2181 62 33 0 chr4 63129490 63129789 -121158873 + AluY SINE Alu 1 308 0 375 312 101 42 chr4 63130434 63130623 -121158039 - MIR SINE MIR -57 205 6 23 0 0 0 chr4 63130688 63130711 -121157951 + AT_rich Low_complexity Low_complexity 1 23 0 200 276 194 10 chr4 63130974 63131072 -121157590 - L3 LINE CR1 -756 821 706 208 269 15 0 chr4 63131511 63131578 -121157084 + T-rich Low_complexity Low_complexity 3 70 0 209 156 11 44 chr4 63132834 63132924 -121155738 + (TATATG)n Simple_repeat Simple_repeat 2 88 0 184 194 0 32 chr4 63132953 63133015 -121155647 + (TA)n Simple_repeat Simple_repeat 2 61 0 229 309 32 11 chr4 63133433 63133527 -121155135 + MIR3 SINE MIR 112 207 -1 278 356 0 44 chr4 63133786 63133921 -121154741 - L3 LINE CR1 -53 1524 1396 184 161 62 0 chr4 63133925 63134006 -121154656 + (TA)n Simple_repeat Simple_repeat 2 87 0 282 291 80 63 chr4 63134185 63134360 -121154302 + MIR SINE MIR 20 197 -65 344 365 6 31 chr4 63134618 63134777 -121153885 - LTR16B LTR ERVL -300 164 10 383 256 165 28 chr4 63135367 63135543 -121153119 - MER63A DNA MER1_type -3 207 8 3103 158 48 19 chr4 63135557 63136138 -121152524 + MER6A DNA MER2_type 5 602 -3 22 70 0 0 chr4 63136837 63136880 -121151782 + AT_rich Low_complexity Low_complexity 1 43 0 24 91 0 0 chr4 63137471 63137537 -121151125 + AT_rich Low_complexity Low_complexity 1 66 0 194 297 33 33 chr4 63137779 63137870 -121150792 + L2 LINE L2 2222 2312 -1002 1662 193 14 14 chr4 63138107 63138459 -121150203 + L1MA5 LINE L1 5936 6287 -13 22 35 0 0 chr4 63138640 63138669 -121149993 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 63140754 63140775 -121147887 + AT_rich Low_complexity Low_complexity 1 21 0 836 305 98 15 chr4 63140896 63141224 -121147438 + L2 LINE L2 550 904 -2410 446 288 7 27 chr4 63141261 63141407 -121147255 - L2 LINE L2 0 3313 3171 370 322 171 41 chr4 63141447 63141973 -121146689 - L2 LINE L2 -653 2661 2002 489 71 0 0 chr4 63141973 63142043 -121146619 + (CA)n Simple_repeat Simple_repeat 1 70 0 370 322 171 41 chr4 63142043 63142289 -121146373 - L2 LINE L2 -1312 2002 1789 1306 183 82 50 chr4 63142819 63143136 -121145526 - L1MC1 LINE L1 -2 6331 6005 22 0 0 0 chr4 63144965 63144987 -121143675 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 63145882 63145907 -121142755 + AT_rich Low_complexity Low_complexity 1 25 0 299 331 53 41 chr4 63149214 63149383 -121139279 + MIR SINE MIR 7 177 -85 355 110 0 27 chr4 63149478 63149551 -121139111 + (TA)n Simple_repeat Simple_repeat 1 71 0 703 195 38 110 chr4 63149553 63149789 -121138873 + MER20 DNA MER1_type 1 219 0 198 191 0 0 chr4 63152695 63152737 -121135925 + (TA)n Simple_repeat Simple_repeat 2 43 0 294 50 0 0 chr4 63155188 63155228 -121133434 + (ATG)n Simple_repeat Simple_repeat 3 42 0 27 49 0 0 chr4 63156617 63156658 -121132004 + AT_rich Low_complexity Low_complexity 1 41 0 226 313 12 12 chr4 63156816 63156899 -121131763 - MIR SINE MIR -101 161 79 406 280 6 6 chr4 63157455 63157623 -121131039 - HAL1b LINE L1 -240 1108 941 1815 153 39 12 chr4 63158066 63158400 -121130262 - MSTA LTR MaLR -84 344 2 23 33 0 0 chr4 63158439 63158469 -121130193 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr4 63159152 63159184 -121129478 + AT_rich Low_complexity Low_complexity 1 32 0 214 294 70 84 chr4 63160287 63160430 -121128232 - MIR SINE MIR -55 207 67 273 358 37 32 chr4 63160513 63160700 -121127962 - MIR SINE MIR 0 262 75 223 368 153 16 chr4 63160889 63161079 -121127583 + MIR SINE MIR 46 261 -1 770 257 101 35 chr4 63161210 63161980 -121126682 - L1MC5 LINE L1 -50 7911 7056 219 387 59 32 chr4 63162087 63162459 -121126203 + L2 LINE L2 1987 2368 -946 23 0 0 0 chr4 63162982 63163005 -121125657 + AT_rich Low_complexity Low_complexity 1 23 0 30 45 0 0 chr4 63163174 63163218 -121125444 + AT_rich Low_complexity Low_complexity 1 44 0 265 256 0 37 chr4 63164354 63164436 -121124226 + (CATATA)n Simple_repeat Simple_repeat 3 81 0 523 223 31 15 chr4 63165434 63165564 -121123098 + MIR SINE MIR 21 152 -110 626 318 75 42 chr4 63165597 63165981 -121122681 + L2 LINE L2 2916 3312 -1 2328 94 3 0 chr4 63166478 63166775 -121121887 - AluSp SINE Alu -15 298 1 1032 185 14 28 chr4 63167200 63167411 -121121251 - MER3 DNA MER1_type -1 208 1 1826 65 0 4 chr4 63168226 63168456 -121120206 + AluY SINE Alu 67 295 -16 315 259 122 38 chr4 63168685 63168816 -121119846 - LTR16C LTR ERVL -2 489 348 1884 263 67 99 chr4 63169229 63170214 -121118448 + MER45C DNA AcHobo 1 953 0 324 365 49 32 chr4 63170327 63170612 -121118050 - ERVL LTR ERVL -452 5312 5023 496 333 58 51 chr4 63170715 63170768 -121117894 - ERVL LTR ERVL -877 4887 4836 1933 167 26 26 chr4 63170768 63171157 -121117505 - MLT1B LTR MaLR -1 389 1 496 333 58 51 chr4 63171157 63171571 -121117091 - ERVL LTR ERVL -928 4836 4417 291 258 30 61 chr4 63173338 63173470 -121115192 - LTR16C LTR ERVL -2 489 362 322 242 0 0 chr4 63173712 63173811 -121114851 - MER63 DNA MER1_type -52 1009 911 855 264 58 4 chr4 63173850 63174108 -121114554 - MER63 DNA MER1_type -117 944 673 28 29 0 0 chr4 63174138 63174173 -121114489 + AT_rich Low_complexity Low_complexity 1 35 0 2071 215 122 28 chr4 63174888 63175559 -121113103 + MER50 LTR ERV1 1 734 0 473 324 51 0 chr4 63175599 63175775 -121112887 - MIR SINE MIR -28 234 50 303 320 132 46 chr4 63175768 63175987 -121112675 + L2 LINE L2 314 551 -2763 * 787 126 0 252 chr4 63175998 63176156 -121112506 - Tigger7 DNA MER2_type -1 2486 2442 2186 107 0 0 chr4 63176156 63176447 -121112215 + AluSg SINE Alu 3 293 -17 787 126 0 252 chr4 63176447 63176597 -121112065 - Tigger7 DNA MER2_type -45 2442 2256 2062 224 103 40 chr4 63176597 63176759 -121111903 - MER50 LTR ERV1 -3 731 581 2142 106 3 3 chr4 63176759 63177052 -121111610 + AluSg SINE Alu 1 293 -17 2062 224 103 40 chr4 63177052 63177568 -121111094 - MER50 LTR ERV1 -153 581 10 611 81 0 12 chr4 63177579 63177665 -121110997 - Tigger7 DNA MER2_type -226 2361 2277 * 1222 223 60 19 chr4 63177659 63177928 -121110734 - Tigger7 DNA MER2_type -450 283 4 248 376 30 6 chr4 63178236 63178401 -121110261 + L2 LINE L2 695 863 -2451 1246 308 198 36 chr4 63178460 63179506 -121109156 + L2 LINE L2 1541 2755 -559 335 321 211 29 chr4 63179640 63179948 -121108714 + L2 LINE L2 2929 3292 -21 204 368 0 23 chr4 63180162 63180249 -121108413 + L2 LINE L2 3229 3313 0 42214 38 21 1 chr4 63181291 63187315 -121101347 + L1PA2 LINE L1 4 6150 -5 1961 147 59 8 chr4 63188296 63188650 -121100012 + THE1C LTR MaLR 1 372 -3 28 29 0 0 chr4 63188830 63188865 -121099797 + AT_rich Low_complexity Low_complexity 1 35 0 330 336 115 0 chr4 63189106 63189219 -121099443 - MIR SINE MIR -124 138 13 23 54 0 0 chr4 63189446 63189483 -121099179 + AT_rich Low_complexity Low_complexity 1 37 0 713 288 12 0 chr4 63191140 63191310 -121097352 + MER5A DNA MER1_type 17 188 -1 1408 200 27 39 chr4 63191397 63191732 -121096930 - MER58B DNA MER1_type -10 331 1 1379 229 98 12 chr4 63191750 63192087 -121096575 + MLT2D LTR ERVL 1 366 -48 221 83 28 0 chr4 63192094 63192130 -121096532 + (TA)n Simple_repeat Simple_repeat 2 38 0 443 81 0 14 chr4 63192161 63192235 -121096427 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 22 56 0 0 chr4 63192275 63192311 -121096351 + AT_rich Low_complexity Low_complexity 1 36 0 306 210 0 0 chr4 63192318 63192380 -121096282 - L1MC4 LINE L1 -1340 6702 6641 396 270 0 0 chr4 63192506 63192595 -121096067 + MER5A DNA MER1_type 18 106 -83 22 56 0 0 chr4 63194339 63194375 -121094287 + AT_rich Low_complexity Low_complexity 1 36 0 257 125 0 0 chr4 63194777 63194817 -121093845 + MADE1 DNA Mariner 41 80 0 21 0 0 0 chr4 63194967 63194988 -121093674 + AT_rich Low_complexity Low_complexity 1 21 0 222 333 0 0 chr4 63196572 63196641 -121092021 + L2 LINE L2 1367 1435 -1879 1521 202 13 19 chr4 63196645 63197009 -121091653 + AluJb SINE Alu 1 362 0 369 276 18 82 chr4 63197067 63197237 -121091425 + L2 LINE L2 1519 1677 -1637 1578 195 17 10 chr4 63197688 63197986 -121090676 - AluSx SINE Alu -12 300 1 533 199 22 119 chr4 63198098 63198324 -121090338 - LTR37A LTR ERV1 0 426 223 285 269 10 67 chr4 63198375 63198479 -121090183 - LTR37A LTR ERV1 -213 213 116 25 51 0 0 chr4 63198877 63198916 -121089746 + AT_rich Low_complexity Low_complexity 1 39 0 186 298 0 0 chr4 63200229 63200276 -121088386 + MER5A DNA MER1_type 137 183 -6 259 287 107 25 chr4 63200425 63200547 -121088115 + L2 LINE L2 2686 2817 -497 330 138 0 0 chr4 63201487 63201545 -121087117 + (TG)n Simple_repeat Simple_repeat 1 58 0 11336 44 4 21 chr4 63201739 63203866 -121084796 + L1PA5 LINE L1 3950 6034 -120 2237 74 0 7 chr4 63203866 63204162 -121084500 + AluY SINE Alu 1 294 -17 11336 44 4 21 chr4 63204162 63204280 -121084382 + L1PA5 LINE L1 6034 6152 -2 232 316 0 13 chr4 63204621 63204700 -121083962 - L1MEd LINE L1 -4891 1228 1151 330 236 91 55 chr4 63205024 63205189 -121083473 - L1MC2 LINE L1 -16 6328 6158 1568 201 41 9 chr4 63205189 63205527 -121083135 + MLT1A1 LTR MaLR 1 349 -16 180 0 0 0 chr4 63205527 63205547 -121083115 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 4926 181 29 9 chr4 63205548 63206811 -121081851 - L1MC1 LINE L1 -173 6160 4869 1691 193 61 15 chr4 63207400 63207793 -121080869 - MLT2D LTR ERVL -3 411 1 373 145 16 0 chr4 63207793 63207855 -121080807 - ERVL-D LTR ERVL -7 5757 5695 11537 193 16 21 chr4 63207864 63210085 -121078577 - ERVL-D LTR ERVL -348 5416 3207 1029 224 60 15 chr4 63210096 63210364 -121078298 - MLT2D LTR ERVL -134 280 1 22 0 0 0 chr4 63210579 63210601 -121078061 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr4 63210725 63210763 -121077899 + AT_rich Low_complexity Low_complexity 1 38 0 2010 143 10 0 chr4 63211309 63211609 -121077053 - AluSq SINE Alu -10 303 1 31 44 0 0 chr4 63211620 63211665 -121076997 + AT_rich Low_complexity Low_complexity 1 45 0 799 318 77 43 chr4 63212540 63213415 -121075247 - HAL1 LINE L1 -2 2505 1602 33 25 0 0 chr4 63213662 63213702 -121074960 + AT_rich Low_complexity Low_complexity 1 40 0 1042 279 78 34 chr4 63214453 63215104 -121073558 + L1ME4a LINE L1 5376 6073 -48 24 0 0 0 chr4 63215123 63215147 -121073515 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr4 63215497 63215535 -121073127 + AT_rich Low_complexity Low_complexity 1 38 0 194 128 26 0 chr4 63216563 63216602 -121072060 + (TA)n Simple_repeat Simple_repeat 2 41 0 382 253 0 0 chr4 63216936 63217023 -121071639 + L2 LINE L2 606 692 -2622 306 338 113 31 chr4 63217042 63217264 -121071398 - MIR SINE MIR -9 253 14 23 78 0 0 chr4 63217353 63217404 -121071258 + AT_rich Low_complexity Low_complexity 1 51 0 536 257 76 12 chr4 63217501 63217672 -121070990 + MIR SINE MIR 49 230 -32 22 0 0 0 chr4 63217697 63217719 -121070943 + AT_rich Low_complexity Low_complexity 1 22 0 360 289 79 47 chr4 63217865 63218055 -121070607 + L2 LINE L2 39 234 -3080 663 314 160 21 chr4 63218058 63218446 -121070216 + LTR33 LTR ERVL 26 467 -54 206 347 58 16 chr4 63218481 63218602 -121070060 + L2 LINE L2 1157 1282 -2032 22 0 0 0 chr4 63218896 63218918 -121069744 + AT_rich Low_complexity Low_complexity 1 22 0 222 256 306 12 chr4 63219339 63219499 -121069163 + L2 LINE L2 1326 1532 -1782 959 315 36 34 chr4 63219514 63220159 -121068503 + MER20B DNA MER1_type 62 707 -76 617 298 32 0 chr4 63220677 63220865 -121067797 + MIR SINE MIR 66 259 -3 805 157 0 0 chr4 63223139 63223273 -121065389 - AluSc SINE Alu -8 301 168 378 57 0 0 chr4 63223526 63223579 -121065083 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 1953 120 4 4 chr4 63223581 63223857 -121064805 - AluSc SINE Alu -33 276 1 2144 88 67 0 chr4 63223909 63224237 -121064425 - L1PA13 LINE L1 -3 6160 5811 794 108 8 0 chr4 63224237 63224357 -121064305 + L1PA13 LINE L1 5688 5808 -360 27 29 0 0 chr4 63225065 63225099 -121063563 + AT_rich Low_complexity Low_complexity 1 34 0 24 53 0 0 chr4 63225536 63225574 -121063088 + AT_rich Low_complexity Low_complexity 1 38 0 1611 253 138 26 chr4 63226177 63226715 -121061947 + MLT1E2 LTR MaLR 29 626 0 23 0 0 0 chr4 63227033 63227056 -121061606 + AT_rich Low_complexity Low_complexity 1 23 0 1455 172 15 120 chr4 63227258 63227666 -121060996 - MLT1A1 LTR MaLR 0 365 1 1377 264 77 36 chr4 63227872 63228368 -121060294 - LTR40a LTR ERVL -3 516 1 804 215 13 0 chr4 63228377 63228526 -121060136 - HERVL40 LTR ERVL -9 5521 5371 438 286 30 30 chr4 63228528 63228696 -121059966 - HERVL40 LTR ERVL -87 2950 2783 886 254 165 57 chr4 63228958 63229398 -121059264 - MLT1D LTR MaLR 0 654 8 1509 278 66 43 chr4 63230025 63230638 -121058024 - HERVL40 LTR ERVL -692 4660 2036 310 293 0 0 chr4 63231146 63231228 -121057434 - MER5A DNA MER1_type -98 91 10 246 160 0 40 chr4 63231295 63231345 -121057317 - MLT2B3 LTR ERVL 0 554 507 366 147 0 0 chr4 63231353 63231421 -121057241 + (CATA)n Simple_repeat Simple_repeat 2 69 0 1401 235 56 42 chr4 63231421 63231653 -121057009 - MLT2B3 LTR ERVL -40 514 274 2143 137 0 0 chr4 63231653 63231960 -121056702 + AluSg SINE Alu 1 307 -3 1401 235 56 42 chr4 63231960 63232085 -121056577 - MLT2B3 LTR ERVL -280 274 152 1558 207 104 32 chr4 63232324 63232729 -121055933 + Tigger2a DNA MER2_type 1 434 0 6876 200 119 9 chr4 63232806 63234379 -121054283 + MER52A LTR ERV1 1 1746 -9 246 143 0 0 chr4 63235517 63235566 -121053096 + (CA)n Simple_repeat Simple_repeat 2 50 0 1584 249 50 52 chr4 63236117 63236618 -121052044 + MLT2B1 LTR ERVL 1 500 -20 262 219 31 73 chr4 63236649 63236745 -121051917 + L1MC4 LINE L1 6612 6703 -1339 227 256 98 0 chr4 63236717 63236799 -121051863 - L1MC4 LINE L1 -1339 6703 6614 * 226 191 59 15 chr4 63236749 63236817 -121051845 + L1MCa LINE L1 1995 2065 -4361 * 245 173 0 3 chr4 63236845 63236893 -121051769 + MLT2C1 LTR ERVL 350 413 -1 555 269 0 15 chr4 63237373 63237503 -121051159 - L2 LINE L2 -7 3306 3179 226 354 55 8 chr4 63237542 63237669 -121050993 + MIR SINE MIR 28 160 -102 265 341 8 0 chr4 63238435 63238558 -121050104 + (TA)n Simple_repeat Simple_repeat 2 125 0 773 260 97 39 chr4 63238591 63238645 -121050017 - MLT2C2 LTR ERVL 0 464 415 633 49 0 0 chr4 63238645 63238726 -121049936 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 773 260 97 39 chr4 63238726 63239032 -121049630 - MLT2C2 LTR ERVL -49 415 83 369 0 0 0 chr4 63239136 63239177 -121049485 + (TG)n Simple_repeat Simple_repeat 2 42 0 1188 258 17 17 chr4 63239303 63239590 -121049072 - AluJo SINE Alu -14 288 2 381 22 0 0 chr4 63239745 63239791 -121048871 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 38 22 0 0 chr4 63240015 63240060 -121048602 + AT_rich Low_complexity Low_complexity 1 45 0 198 250 0 0 chr4 63240299 63240339 -121048323 + MIR SINE MIR 213 252 -10 346 157 22 135 chr4 63243410 63243499 -121045163 + Charlie3 DNA MER1_type 2628 2706 -4 2049 123 3 10 chr4 63243901 63244203 -121044459 + AluSx SINE Alu 1 300 -12 207 0 0 0 chr4 63246019 63246042 -121042620 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 393 241 102 0 chr4 63246862 63246970 -121041692 - MIR SINE MIR -65 197 79 237 380 63 32 chr4 63246980 63247138 -121041524 - MER91A DNA MER1_type -32 164 2 802 255 57 0 chr4 63248754 63248966 -121039696 - MIR SINE MIR -21 241 18 822 251 28 19 chr4 63249325 63249536 -121039126 + MIR SINE MIR 40 252 -10 294 241 46 19 chr4 63250917 63251025 -121037637 - L1ME4a LINE L1 -37 6084 5974 2141 95 0 3 chr4 63252244 63252558 -121036104 + AluSq SINE Alu 2 314 0 562 327 135 16 chr4 63252835 63253266 -121035396 + L2 LINE L2 1890 2371 -943 1927 115 4 0 chr4 63253601 63253871 -121034791 + AluSq SINE Alu 30 300 -13 25 75 0 0 chr4 63254109 63254162 -121034500 + AT_rich Low_complexity Low_complexity 1 53 0 5234 233 56 44 chr4 63254584 63256728 -121031934 - L1 LINE L1 -2413 5152 3035 994 32 0 59 chr4 63256728 63256915 -121031747 + (TTCC)n Simple_repeat Simple_repeat 3 178 0 1857 168 7 0 chr4 63256915 63257207 -121031455 - AluSx SINE Alu -18 294 1 5234 233 56 44 chr4 63257207 63257642 -121031020 - L1 LINE L1 -4529 3036 2560 227 294 0 0 chr4 63457761 63457812 -120830850 + MIR SINE MIR 70 120 -142 28 71 0 0 chr4 63458327 63458383 -120830279 + AT_rich Low_complexity Low_complexity 1 56 0 316 299 60 30 chr4 63458548 63458749 -120829913 - L1ME LINE L1 -384 5786 5580 338 342 38 19 chr4 63458858 63459016 -120829646 - L1ME LINE L1 -1341 4805 4645 251 250 38 38 chr4 63459089 63459221 -120829441 - L1ME LINE L1 -2579 3567 3436 1145 314 134 25 chr4 63459278 63460272 -120828390 - L1ME LINE L1 -2834 3312 2211 180 0 0 0 chr4 63461191 63461211 -120827451 + (T)n Simple_repeat Simple_repeat 1 20 0 512 100 0 11 chr4 63461616 63461706 -120826956 + (GA)n Simple_repeat Simple_repeat 2 90 0 24 0 0 0 chr4 63461732 63461756 -120826906 + AT_rich Low_complexity Low_complexity 1 24 0 2330 88 6 6 chr4 63463814 63464143 -120824519 - L1P4 LINE L1 -489 5679 5351 2886 97 37 0 chr4 63464144 63464576 -120824086 + L1PA13 LINE L1 5713 6160 -3 833 234 28 9 chr4 63465282 63465500 -120823162 + L1MB7 LINE L1 4613 4834 -1312 19302 95 18 4 chr4 63465518 63469142 -120819520 - L1PA7 LINE L1 -5 6149 2484 2858 205 52 9 chr4 63469146 63469819 -120818843 + L1MB7 LINE L1 5276 5977 -207 277 310 76 33 chr4 63469802 63469986 -120818676 - HAL1 LINE L1 -889 1618 1427 * 1026 167 0 0 chr4 63470242 63470410 -120818252 - AluSg/x SINE Alu -1 309 142 394 167 15 0 chr4 63470438 63470504 -120818158 - AluS SINE Alu -236 67 1 1237 220 42 78 chr4 63470619 63471261 -120817401 - L1MC5 LINE L1 -224 7737 7119 1152 230 81 69 chr4 63471265 63471712 -120816950 + MLT1C LTR MaLR 16 467 0 1250 246 19 96 chr4 63471713 63472322 -120816340 - L1MC5 LINE L1 -838 7123 6540 21 0 0 0 chr4 63472491 63472512 -120816150 + AT_rich Low_complexity Low_complexity 1 21 0 314 23 0 23 chr4 63473084 63473128 -120815534 + (TTTTC)n Simple_repeat Simple_repeat 3 45 0 884 140 17 11 chr4 63473156 63473334 -120815328 + CT-rich Low_complexity Low_complexity 2 180 0 289 106 43 0 chr4 63473334 63473381 -120815281 + T-rich Low_complexity Low_complexity 4 52 0 1157 170 15 5 chr4 63473535 63473735 -120814927 - MER47A DNA MER2_type -164 202 1 196 320 51 26 chr4 63473858 63473936 -120814726 + MIR SINE MIR 19 98 -110 200 277 0 0 chr4 63473973 63474020 -120814642 + MIR SINE MIR 213 259 -3 21 36 0 0 chr4 63476777 63476805 -120811857 + AT_rich Low_complexity Low_complexity 1 28 0 198 71 0 0 chr4 63477945 63477973 -120810689 + (TTTTC)n Simple_repeat Simple_repeat 4 31 0 1871 175 12 29 chr4 63477981 63478324 -120810338 + MER1B DNA MER1_type 1 337 0 228 192 10 0 chr4 63478337 63478391 -120810271 - MIR SINE MIR -62 146 99 237 330 10 68 chr4 63479693 63479796 -120808866 - MIR SINE MIR -73 189 93 938 168 117 5 chr4 63479823 63480019 -120808643 - MER20 DNA MER1_type -1 218 1 2711 210 8 0 chr4 63480171 63480675 -120807987 + Tigger7 DNA MER2_type 6 513 -1974 617 161 0 0 chr4 63480683 63480776 -120807886 + Tigger7 DNA MER2_type 2395 2487 0 395 252 8 73 chr4 63480796 63480878 -120807784 - MIR SINE MIR -107 155 82 769 253 11 11 chr4 63480878 63481056 -120807606 + MER45A DNA AcHobo 1 178 0 395 252 8 73 chr4 63481056 63481096 -120807566 - MIR SINE MIR -180 82 41 506 326 63 80 chr4 63481155 63481566 -120807096 - L2 LINE L2 0 3272 2869 237 312 78 54 chr4 63481587 63481792 -120806870 - MLT1I LTR MaLR -22 387 178 397 326 46 8 chr4 63482496 63482656 -120806006 + MIR SINE MIR 3 166 -63 432 278 91 48 chr4 63482669 63482878 -120805784 - MIR SINE MIR 0 262 45 215 236 0 0 chr4 63483049 63483104 -120805558 + (TA)n Simple_repeat Simple_repeat 1 55 0 22 0 0 0 chr4 63483429 63483451 -120805211 + AT_rich Low_complexity Low_complexity 1 22 0 7408 36 2 0 chr4 63483785 63485140 -120803522 - L1PA4 LINE L1 -3 6152 4794 15726 30 2 0 chr4 63485140 63487040 -120801622 + L1PA4 LINE L1 2900 4803 -1343 2191 127 3 0 chr4 63487112 63487419 -120801243 + AluSp SINE Alu 3 310 -3 394 370 39 11 chr4 63487747 63487928 -120800734 + MER5A DNA MER1_type 1 186 -3 646 265 148 0 chr4 63488404 63488566 -120800096 + MER5A DNA MER1_type 4 189 0 22 0 0 0 chr4 63488836 63488858 -120799804 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 63489086 63489107 -120799555 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 63489593 63489615 -120799047 + AT_rich Low_complexity Low_complexity 1 22 0 249 214 0 0 chr4 63490304 63490360 -120798302 + A-rich Low_complexity Low_complexity 1 56 0 207 200 0 0 chr4 63491997 63492042 -120796620 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 23 114 0 0 chr4 63492526 63492640 -120796022 + AT_rich Low_complexity Low_complexity 1 114 0 1978 128 0 3 chr4 63493041 63493343 -120795319 - AluSx SINE Alu 0 301 1 565 354 37 73 chr4 63493641 63494203 -120794459 - L3 LINE CR1 -17 1560 1019 1760 183 31 14 chr4 63494251 63494600 -120794062 + MLT2D LTR ERVL 3 357 -57 220 228 65 11 chr4 63494605 63494697 -120793965 + (TA)n Simple_repeat Simple_repeat 2 98 0 269 132 0 0 chr4 63494703 63494751 -120793911 + MLT2C2 LTR ERVL 416 456 -8 304 176 71 24 chr4 63494767 63494852 -120793810 - L3 LINE CR1 -804 773 685 205 358 46 9 chr4 63495533 63495642 -120793020 - MIR SINE MIR -13 249 137 1342 224 39 33 chr4 63495653 63495983 -120792679 + MER58B DNA MER1_type 7 338 -3 304 298 79 9 chr4 63496904 63497018 -120791644 - MIR3 SINE MIR -23 185 64 356 223 242 38 chr4 63497431 63497588 -120791074 - Charlie8 DNA MER1_type -2197 220 32 1009 102 6 60 chr4 63497588 63497755 -120790907 + AluSg/x SINE Alu 111 268 -44 25 0 0 0 chr4 63498966 63498991 -120789671 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr4 63499129 63499150 -120789512 + AT_rich Low_complexity Low_complexity 1 21 0 30 45 0 0 chr4 63499179 63499223 -120789439 + AT_rich Low_complexity Low_complexity 1 44 0 291 279 76 29 chr4 63499518 63499690 -120788972 - L2 LINE L2 -206 3107 2928 390 329 48 20 chr4 63499832 63500127 -120788535 + L1MEc LINE L1 1454 1756 -4640 2059 110 7 0 chr4 63500282 63500573 -120788089 + AluSx SINE Alu 19 311 -1 295 117 78 52 chr4 63500573 63500640 -120788022 + MER4C LTR ERV1 8 79 -386 222 143 0 20 chr4 63500665 63500714 -120787948 + (CAAAC)n Simple_repeat Simple_repeat 2 49 0 789 242 45 25 chr4 63500754 63501104 -120787558 + MER4C LTR ERV1 158 465 0 376 344 55 35 chr4 63501115 63501519 -120787143 + L1MEc LINE L1 1929 2340 -4056 1315 270 92 38 chr4 63501537 63502116 -120786546 + L2 LINE L2 2688 3313 0 1032 236 57 41 chr4 63502572 63502749 -120785913 + MLT1A2 LTR MaLR 1 174 -200 189 0 0 0 chr4 63502749 63502770 -120785892 + (TC)n Simple_repeat Simple_repeat 1 21 0 1032 236 57 41 chr4 63502770 63502960 -120785702 + MLT1A2 LTR MaLR 174 374 0 1405 191 15 88 chr4 63504010 63504409 -120784253 + MLT1A2 LTR MaLR 1 370 -4 457 276 162 51 chr4 63504921 63505362 -120783300 + MLT1H LTR MaLR 1 549 0 206 403 45 9 chr4 63505586 63505807 -120782855 - MIR SINE MIR -1 261 33 1696 207 55 9 chr4 63507154 63507497 -120781165 - MLT1A1 LTR MaLR -6 359 1 25 51 0 0 chr4 63507859 63507898 -120780764 + AT_rich Low_complexity Low_complexity 1 39 0 23 33 0 0 chr4 63509478 63509508 -120779154 + AT_rich Low_complexity Low_complexity 1 30 0 2326 143 30 41 chr4 63509600 63510039 -120778623 + Tigger2a DNA MER2_type 1 434 0 202 345 194 0 chr4 63510057 63510196 -120778466 + MIR SINE MIR 5 170 -92 187 367 0 22 chr4 63510427 63510517 -120778145 + MIR SINE MIR 78 165 -97 560 321 36 13 chr4 63511249 63511473 -120777189 + MIR SINE MIR 1 229 -33 392 128 14 163 chr4 63511475 63511616 -120777046 - MER96B DNA MER1_type? -189 228 109 562 262 37 18 chr4 63511620 63511784 -120776878 - MLT1A2 LTR MaLR -52 322 156 2050 119 7 13 chr4 63511787 63512089 -120776573 - AluSp SINE Alu -13 300 1 592 260 64 51 chr4 63512146 63512257 -120776405 + MLT1L LTR MaLR 142 250 -365 1591 220 53 33 chr4 63512257 63512711 -120775951 - MLT1C LTR MaLR 0 467 5 592 260 64 51 chr4 63512711 63512834 -120775828 + MLT1L LTR MaLR 250 379 -236 296 198 86 0 chr4 63512916 63512997 -120775665 + MLT1L LTR MaLR 524 611 -4 195 129 0 0 chr4 63513095 63513126 -120775536 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1579 220 6 8 chr4 63514239 63514602 -120774060 - L1MB3 LINE L1 -2 6181 5820 43749 41 5 1 chr4 63514608 63520743 -120767919 + L1PA3 LINE L1 1 6155 0 2226 152 29 11 chr4 63520752 63521098 -120767564 - L1MB3 LINE L1 -340 5831 5476 264 59 0 0 chr4 63521098 63521132 -120767530 + (TG)n Simple_repeat Simple_repeat 1 34 0 2226 152 29 11 chr4 63521132 63521167 -120767495 - L1MB3 LINE L1 -695 5476 5443 230 307 117 29 chr4 63521194 63521399 -120767263 + L2 LINE L2 1560 1782 -1532 1305 296 45 44 chr4 63521400 63522212 -120766450 - L2 LINE L2 -1 3312 2487 1712 186 11 0 chr4 63522370 63522677 -120765985 + AluJo SINE Alu 1 310 0 260 357 71 0 chr4 63522840 63522952 -120765710 + L2 LINE L2 2968 3087 -226 181 318 93 0 chr4 63523398 63523505 -120765157 + MIR SINE MIR 90 206 -56 426 73 132 0 chr4 63523722 63523790 -120764872 - MADE1 DNA Mariner -3 77 1 185 278 56 56 chr4 63524245 63524353 -120764309 - L2 LINE L2 -898 2416 2309 301 344 88 26 chr4 63524435 63524627 -120764035 + L2 LINE L2 2855 3058 -214 415 123 0 0 chr4 63524732 63524797 -120763865 - AluSc SINE Alu -13 296 232 1913 103 4 0 chr4 63524873 63525172 -120763490 + L1PA7 LINE L1 5865 6164 0 608 305 62 8 chr4 63528382 63528627 -120760035 + MIR SINE MIR 6 262 0 284 47 0 23 chr4 63528877 63528920 -120759742 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 253 370 101 52 chr4 63530912 63531318 -120757344 + L2 LINE L2 2443 2868 -446 224 250 17 0 chr4 63532776 63532836 -120755826 + CT-rich Low_complexity Low_complexity 2 62 0 975 255 91 54 chr4 63533155 63533563 -120755099 + LTR53 LTR ERVL 1 423 -96 21 0 0 0 chr4 63534015 63534036 -120754626 + AT_rich Low_complexity Low_complexity 1 21 0 198 304 13 63 chr4 63534171 63534250 -120754412 - L2 LINE L2 0 3313 3239 846 181 0 42 chr4 63534286 63534452 -120754210 + MER6B DNA MER2_type 52 210 0 344 348 180 0 chr4 63535883 63536133 -120752529 + LTR16A LTR ERVL 146 440 -10 297 355 24 24 chr4 63536143 63536312 -120752350 + HERV16 LTR ERVL 3 171 -4825 3266 306 81 41 chr4 63536600 63538748 -120749914 + HERV16 LTR ERVL 571 2847 -2149 1719 342 41 28 chr4 63538728 63539783 -120748879 + MERVL LTR ERVL 4259 5326 -438 * 191 313 62 0 chr4 63539820 63539884 -120748778 + L3 LINE CR1 1203 1270 -307 406 248 38 0 chr4 63539957 63540062 -120748600 + L3 LINE CR1 1427 1535 -42 2193 138 22 6 chr4 63540313 63540668 -120747994 + MER47A DNA MER2_type 1 361 -5 31 26 0 0 chr4 63540819 63540857 -120747805 + AT_rich Low_complexity Low_complexity 1 38 0 2517 70 0 0 chr4 63541242 63541543 -120747119 - AluY SINE Alu -10 301 1 1550 190 123 36 chr4 63542922 63543338 -120745324 - MSTB2 LTR MaLR 0 457 6 786 301 86 47 chr4 63543442 63543851 -120744811 + LTR33 LTR ERVL 35 459 -62 426 112 22 11 chr4 63544040 63544129 -120744533 + (TCTA)n Simple_repeat Simple_repeat 4 93 0 918 292 106 7 chr4 63546233 63546534 -120742128 + LTR16C LTR ERVL 103 433 -58 4155 197 49 17 chr4 63546553 63546702 -120741960 - MER54A LTR ERVL 0 901 758 1755 193 0 3 chr4 63546702 63546998 -120741664 - AluJb SINE Alu -17 295 1 4155 197 49 17 chr4 63546998 63547721 -120740941 - MER54A LTR ERVL -143 758 1 248 0 31 0 chr4 63547890 63547922 -120740740 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 390 303 104 30 chr4 63548034 63548265 -120740397 + MERVL LTR ERVL 4643 4890 -595 2030 173 29 48 chr4 63548275 63548661 -120740001 + MLT2A2 LTR ERVL 1 372 -182 2330 109 0 0 chr4 63548661 63548963 -120739699 - AluSc SINE Alu -5 304 3 2030 173 29 48 chr4 63548963 63549135 -120739527 + MLT2A2 LTR ERVL 372 546 -8 24 0 0 0 chr4 63549324 63549348 -120739314 + AT_rich Low_complexity Low_complexity 1 24 0 1126 102 61 5 chr4 63549352 63549548 -120739114 - L1MA5 LINE L1 -8 6292 6086 919 291 71 31 chr4 63550019 63550369 -120738293 + LTR16C LTR ERVL 89 452 -39 226 241 35 23 chr4 63550369 63550456 -120738206 + MER103 DNA DNA 32 119 -47 976 260 121 10 chr4 63550730 63551118 -120737544 + MER110A LTR ERV1 36 466 -2 183 267 17 17 chr4 63551265 63551325 -120737337 - MIR SINE MIR -25 237 178 1932 196 25 26 chr4 63551325 63551790 -120736872 + MER89 LTR ERV1 1 559 0 439 298 113 0 chr4 63551792 63551943 -120736719 - MIR SINE MIR -83 179 12 2021 240 44 36 chr4 63551986 63552603 -120736059 + MER92B LTR ERV1 1 622 -14 1222 147 105 11 chr4 63552617 63552902 -120735760 - MER33 DNA MER1_type -6 318 7 299 253 25 25 chr4 63553877 63553956 -120734706 - L2 LINE L2 -8 3305 3227 1837 164 19 28 chr4 63555013 63555372 -120733290 + L1MB7 LINE L1 5813 6168 -16 256 206 55 0 chr4 63555479 63555552 -120733110 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 197 325 62 0 chr4 63557932 63558012 -120730650 + L2 LINE L2 2731 2815 -499 1400 281 170 15 chr4 63558399 63559115 -120729547 - L2 LINE L2 -564 2750 1924 1433 171 64 46 chr4 63560218 63560546 -120728116 - THE1C LTR MaLR -41 334 1 4400 270 68 23 chr4 63560586 63562043 -120726619 + ERVL-F LTR ERVL 4121 5643 -121 270 250 25 0 chr4 63562057 63562137 -120726525 + Ricksha DNA DNA 264 345 -1701 668 317 90 55 chr4 63562137 63562626 -120726036 + MLT2F LTR ERVL 1 506 -157 276 149 0 0 chr4 63562831 63562878 -120725784 + (GA)n Simple_repeat Simple_repeat 2 48 0 353 324 106 8 chr4 63563290 63563546 -120725116 + L2 LINE L2 1802 2082 -1232 245 407 66 32 chr4 63563587 63563965 -120724697 + L2 LINE L2 2442 2832 -482 182 304 0 0 chr4 63564136 63564192 -120724470 - L2 LINE L2 0 3313 3258 207 0 0 0 chr4 63564457 63564480 -120724182 + (TATG)n Simple_repeat Simple_repeat 4 26 0 13451 150 37 12 chr4 63565619 63567979 -120720683 + Tigger1 DNA MER2_type 1 2418 0 604 232 7 26 chr4 63568084 63568235 -120720427 - LTR7 LTR ERV1 0 450 303 323 317 48 0 chr4 63568693 63568797 -120719865 + L2 LINE L2 3205 3313 0 308 237 96 37 chr4 63568923 63569058 -120719604 + L1ME4a LINE L1 5974 6116 -5 434 275 58 7 chr4 63569200 63569338 -120719324 - MIR SINE MIR -116 146 2 2009 9 0 0 chr4 63569802 63570023 -120718639 - AluYb8 SINE Alu 0 318 98 2144 121 0 13 chr4 63570027 63570340 -120718322 - AluSx SINE Alu -3 309 1 197 363 85 52 chr4 63570372 63570584 -120718078 + L2 LINE L2 2843 3061 -252 195 233 8 42 chr4 63570643 63570763 -120717899 + (TATATG)n Simple_repeat Simple_repeat 3 118 0 4907 188 14 18 chr4 63570814 63572221 -120716441 - L1MB1 LINE L1 -32 6136 4741 2772 57 11 11 chr4 63572297 63572664 -120715998 + L1PA6 LINE L1 5782 6148 -6 25 31 0 0 chr4 63572731 63572763 -120715899 + AT_rich Low_complexity Low_complexity 1 32 0 241 216 32 8 chr4 63573258 63573383 -120715279 + (TA)n Simple_repeat Simple_repeat 1 128 0 257 409 38 8 chr4 63574492 63574624 -120714038 + L2 LINE L2 3137 3272 0 277 240 30 10 chr4 63575137 63575237 -120713425 + (TA)n Simple_repeat Simple_repeat 1 102 0 814 249 63 30 chr4 63575947 63576184 -120712478 - MIR SINE MIR -6 256 12 1074 211 51 15 chr4 63576324 63576723 -120711939 - MLT1D LTR MaLR -6 499 1 1054 240 32 114 chr4 63576812 63577433 -120711229 - HsTC2 DNA Tc2 -45 1853 1284 506 348 70 20 chr4 63577567 63577980 -120710682 - L2 LINE L2 -1995 1319 884 428 320 62 41 chr4 63577980 63578224 -120710438 + MIR SINE MIR 1 249 -13 31 58 0 0 chr4 63578227 63578279 -120710383 + AT_rich Low_complexity Low_complexity 1 52 0 247 343 10 0 chr4 63578350 63578449 -120710213 - L2 LINE L2 -2509 805 706 323 128 0 0 chr4 63578485 63578532 -120710130 + MSTB1 LTR MaLR 3 49 -383 4259 233 70 11 chr4 63578535 63579579 -120709083 + MSTB1-int LTR MaLR 245 1349 -302 9239 175 24 11 chr4 63579581 63582557 -120706105 + L1PB1 LINE L1 3149 6149 -2 1571 168 27 17 chr4 63582581 63582878 -120705784 + MSTB1-int LTR MaLR 1337 1636 -15 2220 153 39 50 chr4 63582892 63583023 -120705639 + MSTB1 LTR MaLR 1 132 -300 2716 32 0 0 chr4 63583023 63583334 -120705328 - AluY SINE Alu 0 311 1 2220 153 39 50 chr4 63583334 63583639 -120705023 + MSTB1 LTR MaLR 132 432 0 38 0 0 0 chr4 63584295 63584333 -120704329 + AT_rich Low_complexity Low_complexity 1 38 0 289 277 35 43 chr4 63584517 63584658 -120704004 - MIR SINE MIR -70 192 53 391 319 164 5 chr4 63584678 63584891 -120703771 + MIR SINE MIR 2 248 -14 228 111 0 0 chr4 63584902 63584938 -120703724 + (CAT)n Simple_repeat Simple_repeat 2 37 0 213 250 21 0 chr4 63586200 63586248 -120702414 - L2 LINE L2 -15 3257 3209 910 146 24 0 chr4 63586302 63586467 -120702195 - L1MB1 LINE L1 -1 6167 5999 5053 29 0 0 chr4 63586494 63587085 -120701577 - L1PA2 LINE L1 -51 6104 5514 2657 30 0 0 chr4 63587086 63587386 -120701276 + AluY SINE Alu 1 300 -11 1669 196 35 19 chr4 63587631 63587999 -120700663 + MLT1A2 LTR MaLR 1 374 0 1464 209 39 64 chr4 63588426 63588832 -120699830 - MSTD LTR MaLR 0 396 1 596 307 42 81 chr4 63588918 63588943 -120699719 + L2 LINE L2 2970 2994 -319 1569 161 104 23 chr4 63588943 63589290 -120699372 + THE1C LTR MaLR 1 375 0 596 307 42 81 chr4 63589290 63589622 -120699040 + L2 LINE L2 2994 3313 0 219 328 16 0 chr4 63589896 63589960 -120698702 + MIR SINE MIR 60 124 -84 238 253 108 0 chr4 63590065 63590148 -120698514 - MER103 DNA DNA -20 146 55 2440 73 3 0 chr4 63590392 63590693 -120697969 + AluY SINE Alu 1 302 -9 187 250 213 38 chr4 63591359 63591439 -120697223 + MIR SINE MIR 74 167 -95 1938 117 34 27 chr4 63591567 63591865 -120696797 + AluSg SINE Alu 1 300 -10 23 33 0 0 chr4 63592362 63592392 -120696270 + AT_rich Low_complexity Low_complexity 1 30 0 21530 173 27 37 chr4 63592782 63595919 -120692743 + L1P3 LINE L1 10 3103 -3358 1881 132 0 0 chr4 63595919 63596177 -120692485 + AluSx SINE Alu 39 296 -16 21530 173 27 37 chr4 63596177 63598222 -120690440 + L1P3 LINE L1 3103 5166 -1295 11964 122 24 27 chr4 63598226 63599976 -120688686 - L1P3 LINE L1 -3438 3023 1241 190 0 32 32 chr4 63599976 63600007 -120688655 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 11964 122 24 27 chr4 63600007 63601224 -120687438 - L1P3 LINE L1 -5220 1241 21 1419 274 109 82 chr4 63601271 63602665 -120685997 - HAL1 LINE L1 -1052 1455 24 21 36 0 0 chr4 63603666 63603694 -120684968 + AT_rich Low_complexity Low_complexity 1 28 0 203 295 13 26 chr4 63608656 63608734 -120679928 - L2 LINE L2 0 3313 3237 244 341 11 11 chr4 63608855 63608946 -120679716 + MLT1J2 LTR MaLR 56 146 -304 276 100 0 0 chr4 63609206 63609246 -120679416 + (CA)n Simple_repeat Simple_repeat 2 41 0 232 333 41 27 chr4 63609411 63609558 -120679104 + MER89 LTR ERV1 382 530 -29 248 272 33 11 chr4 63609591 63609683 -120678979 + MLT1J1 LTR MaLR 353 446 0 257 283 11 125 chr4 63609821 63610005 -120678657 - L2 LINE L2 -218 3054 2892 21 0 0 0 chr4 63610307 63610328 -120678334 + AT_rich Low_complexity Low_complexity 1 21 0 381 291 202 25 chr4 63610791 63611073 -120677589 - L2 LINE L2 -8 3305 2974 268 314 114 21 chr4 63612414 63612554 -120676108 - L2 LINE L2 0 3313 3161 22055 35 1 2 chr4 63613165 63615872 -120672790 - L1P LINE L1 -1526 4620 1916 3501 24 0 0 chr4 63615872 63616283 -120672379 + L1P LINE L1 4624 5034 -1112 2690 56 15 0 chr4 63616283 63616613 -120672049 + L1PA3 LINE L1 5808 6152 -3 232 159 23 0 chr4 63616663 63616707 -120671955 + MIR SINE MIR 98 142 -66 522 302 89 22 chr4 63617698 63617877 -120670785 + MIR SINE MIR 67 257 -5 1507 212 163 51 chr4 63617880 63618354 -120670308 + MER39 LTR ERV1 5 707 0 2719 241 99 46 chr4 63620085 63621160 -120667502 + Zaphod DNA AcHobo 9 1141 -2890 618 222 8 0 chr4 63621232 63621358 -120667304 + MIR SINE MIR 81 207 -55 2189 126 0 0 chr4 63622097 63622407 -120666255 - AluSx SINE Alu -2 310 1 446 242 94 0 chr4 63623009 63623137 -120665525 + MIR SINE MIR 110 249 -13 596 323 129 27 chr4 63623511 63624032 -120664630 + L2 LINE L2 1705 2278 -1036 26 50 0 0 chr4 63624528 63624568 -120664094 + AT_rich Low_complexity Low_complexity 1 40 0 1633 168 16 44 chr4 63624571 63624676 -120663986 + AluJb SINE Alu 1 107 -205 1786 127 136 15 chr4 63624676 63625008 -120663654 + THE1C LTR MaLR 3 374 -1 9810 123 45 8 chr4 63625009 63626534 -120662128 + THE1C-int LTR MaLR 1 1580 0 2053 137 56 11 chr4 63626534 63626893 -120661769 + THE1C LTR MaLR 1 375 0 1633 168 16 44 chr4 63626893 63627105 -120661557 + AluJb SINE Alu 105 312 0 276 30 0 0 chr4 63627253 63627286 -120661376 + (TA)n Simple_repeat Simple_repeat 2 34 0 1576 160 30 93 chr4 63628549 63628948 -120659714 - MLT1A2 LTR MaLR 0 374 1 2579 252 122 61 chr4 63628948 63629853 -120658809 - MLT1A2-int LTR MaLR 0 1735 887 1522 136 0 0 chr4 63629853 63630103 -120658559 - L1MA5 LINE L1 -2 6298 6049 2579 252 122 61 chr4 63630103 63630718 -120657944 - MLT1A2-int LTR MaLR -848 887 5 1958 189 20 96 chr4 63630724 63631284 -120657378 - MLT2B1 LTR ERVL -3 517 1 1514 199 26 40 chr4 63633441 63633792 -120654870 + L1ME3A LINE L1 5825 6170 0 485 275 89 52 chr4 63633869 63634243 -120654419 - Charlie8 DNA MER1_type -2140 277 10 364 306 255 5 chr4 63634533 63634729 -120653933 - MIR SINE MIR -6 256 12 200 333 60 17 chr4 63634788 63634820 -120653842 - MIR SINE MIR -66 142 113 3302 137 25 8 chr4 63634820 63635338 -120653324 - MER1A DNA MER1_type 0 527 1 200 333 60 17 chr4 63635338 63635422 -120653240 - MIR SINE MIR -95 113 21 25 0 0 0 chr4 63636569 63636594 -120652068 + AT_rich Low_complexity Low_complexity 1 25 0 271 363 49 0 chr4 63636757 63636859 -120651803 - L2 LINE L2 -16 3256 3150 2060 331 154 16 chr4 63637706 63639073 -120649589 + L2 LINE L2 66 1620 -1694 298 170 245 19 chr4 63639079 63639185 -120649477 - MLT1G LTR MaLR -13 529 400 689 216 50 139 chr4 63639285 63639623 -120649039 - MLT1G LTR MaLR -283 312 5 1809 316 99 57 chr4 63639634 63640927 -120647735 + L2 LINE L2 1629 2976 -338 29 60 0 0 chr4 63641196 63641246 -120647416 + AT_rich Low_complexity Low_complexity 1 50 0 180 0 0 0 chr4 63641576 63641596 -120647066 + (T)n Simple_repeat Simple_repeat 1 20 0 1977 122 38 27 chr4 63643767 63644136 -120644526 + THE1C LTR MaLR 3 375 0 2054 124 0 0 chr4 63644685 63644959 -120643703 - AluSx SINE Alu -38 274 1 28 61 0 0 chr4 63645207 63645256 -120643406 + AT_rich Low_complexity Low_complexity 1 49 0 507 111 44 0 chr4 63645559 63645649 -120643013 - L1MA10 LINE L1 -2 6332 6239 366 91 0 0 chr4 63645668 63645723 -120642939 + (TG)n Simple_repeat Simple_repeat 1 55 0 645 180 13 11 chr4 63645723 63645877 -120642785 - L1MB1 LINE L1 -14 6157 6003 2200 123 0 13 chr4 63647602 63647918 -120640744 - AluSx SINE Alu 0 312 1 1497 192 11 4 chr4 63648296 63648556 -120640106 - AluJo SINE Alu -30 282 21 338 226 75 0 chr4 63648609 63648702 -120639960 + MIR SINE MIR 127 226 -36 1755 147 167 11 chr4 63648767 63649114 -120639548 + MSTA LTR MaLR 1 401 -27 26 30 0 0 chr4 63649127 63649160 -120639502 + AT_rich Low_complexity Low_complexity 1 33 0 818 45 0 27 chr4 63649162 63649273 -120639389 - L1PA5 LINE L1 0 6154 6047 230 158 0 0 chr4 63649273 63649311 -120639351 + MSTA LTR MaLR 391 428 0 21 0 0 0 chr4 63650090 63650111 -120638551 + AT_rich Low_complexity Low_complexity 1 21 0 362 246 80 40 chr4 63650205 63650380 -120638282 + MIR SINE MIR 80 261 -1 189 171 0 0 chr4 63653709 63653744 -120634918 + T-rich Low_complexity Low_complexity 1 35 0 229 254 15 15 chr4 63654324 63654391 -120634271 - Charlie7 DNA MER1_type -2510 102 36 205 294 49 92 chr4 63654414 63654598 -120634064 + MER5B DNA MER1_type 3 178 0 369 86 69 0 chr4 63654714 63654772 -120633890 + MLT1C LTR MaLR 1 62 -405 2205 108 0 0 chr4 63654966 63655261 -120633401 - AluSc SINE Alu -14 295 1 1277 163 10 0 chr4 63656842 63657051 -120631611 + MER2 DNA MER2_type 1 211 -134 28 48 0 0 chr4 63657051 63657093 -120631569 + AT_rich Low_complexity Low_complexity 1 42 0 1178 322 147 42 chr4 63657491 63658799 -120629863 - L2 LINE L2 -4 3309 1871 2396 73 10 0 chr4 63658808 63659110 -120629552 - AluSx SINE Alu -4 308 4 581 359 60 26 chr4 63659612 63659996 -120628666 - LTR33 LTR ERVL -99 422 26 5303 194 41 52 chr4 63659998 63660803 -120627859 + L1ME1 LINE L1 137 924 -5616 1412 168 135 14 chr4 63660803 63661100 -120627562 + MER1B DNA MER1_type 5 337 0 5303 194 41 52 chr4 63661100 63661594 -120627068 + L1ME1 LINE L1 924 1422 -5118 242 245 43 75 chr4 63662671 63662765 -120625897 - L2 LINE L2 -4 3309 3219 217 291 81 35 chr4 63664185 63664271 -120624391 + L2 LINE L2 3191 3280 -33 233 209 15 0 chr4 63664643 63664710 -120623952 + CT-rich Low_complexity Low_complexity 3 70 0 956 211 118 57 chr4 63664749 63664840 -120623822 - MLT2D LTR ERVL 0 414 330 2333 99 0 0 chr4 63664840 63665142 -120623520 + AluSg SINE Alu 1 302 -8 956 211 118 57 chr4 63665142 63665258 -120623404 - MLT2D LTR ERVL -84 330 222 2335 113 13 53 chr4 63665258 63665637 -120623025 - THE1B LTR MaLR 0 364 1 956 211 118 57 chr4 63665637 63665811 -120622851 - MLT2D LTR ERVL -192 222 9 1067 306 24 38 chr4 63666183 63666601 -120622061 - LTR16C LTR ERVL -35 456 45 203 359 77 0 chr4 63666918 63666996 -120621666 + L2 LINE L2 3156 3239 -33 321 260 114 24 chr4 63668417 63668540 -120620122 + MIR SINE MIR 100 233 -29 866 231 22 0 chr4 63668592 63668774 -120619888 - MER5A DNA MER1_type -3 186 1 1473 315 127 27 chr4 63669703 63670751 -120617911 + L2 LINE L2 2137 3313 0 849 268 43 65 chr4 63670829 63671617 -120617045 + L1ME1 LINE L1 1623 2329 -4307 6675 245 36 33 chr4 63671617 63674602 -120614060 + L1ME1 LINE L1 3556 6548 -12 40 0 0 0 chr4 63675396 63675436 -120613226 + AT_rich Low_complexity Low_complexity 1 40 0 331 304 134 74 chr4 63676276 63676559 -120612103 - L2 LINE L2 -178 3135 2836 235 256 47 12 chr4 63677486 63677572 -120611090 + L1ME4a LINE L1 5410 5498 -623 400 307 145 0 chr4 63677573 63677856 -120610806 + L1ME4a LINE L1 5520 5843 -278 311 336 0 27 chr4 63678287 63678397 -120610265 - MER5B DNA MER1_type 0 178 72 21 0 0 0 chr4 63678592 63678613 -120610049 + AT_rich Low_complexity Low_complexity 1 21 0 267 140 0 0 chr4 63678992 63679042 -120609620 + (CA)n Simple_repeat Simple_repeat 2 51 0 2435 204 94 20 chr4 63680174 63680782 -120607880 - Tigger6 DNA MER2_type 0 1597 945 300 295 52 43 chr4 63680916 63681126 -120607536 - Tigger3(Golem) DNA MER2_type -1472 1557 1346 1697 173 65 3 chr4 63681142 63681449 -120607213 - Tigger6 DNA MER2_type -756 327 2 8893 130 22 91 chr4 63681539 63683360 -120605302 + pTR5 LTR ERV1 743 2438 0 2274 83 0 0 chr4 63683576 63683866 -120604796 + AluY SINE Alu 7 296 -15 251 156 47 16 chr4 63684118 63684182 -120604480 - L1ME1 LINE L1 -5 6161 6096 361 264 9 36 chr4 63684182 63684292 -120604370 - U6 snRNA snRNA 0 107 1 232 346 96 37 chr4 63684426 63684614 -120604048 - MIR SINE MIR -10 252 54 736 300 68 0 chr4 63684681 63684901 -120603761 - MIR SINE MIR 0 262 28 349 276 161 10 chr4 63685179 63685371 -120603291 + L2 LINE L2 2924 3144 -169 245 299 43 43 chr4 63685371 63685488 -120603174 - L1MC4a LINE L1 -1217 6591 6475 529 319 50 54 chr4 63685818 63686372 -120602290 - HAL1b LINE L1 -736 612 61 1649 166 0 0 chr4 63689095 63689384 -120599278 - L1MA6 LINE L1 -5 6295 6007 36 0 0 0 chr4 63689391 63689427 -120599235 + AT_rich Low_complexity Low_complexity 1 36 0 3907 100 21 0 chr4 63689429 63689999 -120598663 - L1PA13 LINE L1 -6 6157 5576 315 100 0 0 chr4 63689999 63690049 -120598613 + L1P4 LINE L1 5440 5489 -679 186 50 75 0 chr4 63690171 63690211 -120598451 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 276 298 173 31 chr4 63691279 63691534 -120597128 - L2 LINE L2 -2 3311 3021 329 284 167 43 chr4 63691833 63692157 -120596505 - MLT1L LTR MaLR -29 586 223 306 0 0 0 chr4 63693728 63693762 -120594900 + (TTG)n Simple_repeat Simple_repeat 3 36 0 2192 96 3 3 chr4 63693816 63694107 -120594555 - AluSg SINE Alu -17 293 3 202 336 5 0 chr4 63694765 63694851 -120593811 - MIR SINE MIR -86 122 36 241 250 0 119 chr4 63694949 63694980 -120593682 - MIR SINE MIR 0 262 229 854 156 0 22 chr4 63694980 63695115 -120593547 + FLAM_C SINE Alu 1 132 -1 241 250 0 119 chr4 63695115 63695167 -120593495 - MIR SINE MIR -33 229 189 1930 148 3 3 chr4 63696457 63696747 -120591915 - AluSq SINE Alu -21 292 3 309 27 0 0 chr4 63696888 63696925 -120591737 - MADE1 DNA Mariner -43 37 1 22 88 0 0 chr4 63697577 63697634 -120591028 + AT_rich Low_complexity Low_complexity 1 57 0 1925 156 38 30 chr4 63697663 63698035 -120590627 - THE1C LTR MaLR 0 375 1 8654 142 73 15 chr4 63698035 63699525 -120589137 - THE1C-int LTR MaLR 0 1580 4 1489 162 24 118 chr4 63699528 63699942 -120588720 - THE1C LTR MaLR 0 375 1 230 241 0 0 chr4 63699945 63699999 -120588663 - L1ME LINE L1 -313 5808 5755 314 380 53 8 chr4 63700124 63700387 -120588275 - L1ME LINE L1 -776 5583 5309 240 335 106 12 chr4 63700436 63700606 -120588056 + MIR SINE MIR 76 261 -1 199 218 36 18 chr4 63701281 63701336 -120587326 - L3b LINE CR1 -265 1318 1263 215 294 69 69 chr4 63701480 63701640 -120587022 + MIR SINE MIR 84 243 -19 24 0 0 0 chr4 63701766 63701790 -120586872 + AT_rich Low_complexity Low_complexity 1 24 0 405 266 146 6 chr4 63702195 63702353 -120586309 + MIR SINE MIR 3 182 -80 180 111 0 0 chr4 63702628 63702655 -120586007 + (GA)n Simple_repeat Simple_repeat 2 28 0 234 0 0 0 chr4 63702803 63702829 -120585833 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 21 71 0 0 chr4 63703234 63703276 -120585386 + AT_rich Low_complexity Low_complexity 1 42 0 470 283 36 7 chr4 63703995 63704133 -120584529 - MLT1G1 LTR MaLR 0 595 454 543 283 113 28 chr4 63704163 63704464 -120584198 - MLT1G1 LTR MaLR -196 399 1 429 325 75 91 chr4 63704581 63705008 -120583654 + L2 LINE L2 2853 3272 0 186 71 0 0 chr4 63705057 63705085 -120583577 + (TA)n Simple_repeat Simple_repeat 2 29 0 2117 121 0 0 chr4 63705131 63705421 -120583241 - AluSx SINE Alu -22 290 1 2234 237 93 12 chr4 63705863 63706466 -120582196 - MER82 DNA MER2_type -1 652 1 1749 163 10 13 chr4 63706666 63706966 -120581696 - AluJb SINE Alu -13 299 1 21 0 0 0 chr4 63707837 63707858 -120580804 + AT_rich Low_complexity Low_complexity 1 21 0 1084 232 25 102 chr4 63709440 63709832 -120578830 + MLT1A2 LTR MaLR 1 362 -12 376 299 32 19 chr4 63710031 63710188 -120578474 - MER97c DNA MER1_type? 0 1090 932 33 90 0 0 chr4 63710212 63710301 -120578361 + AT_rich Low_complexity Low_complexity 1 89 0 29 0 0 0 chr4 63710544 63710573 -120578089 + AT_rich Low_complexity Low_complexity 1 29 0 1411 256 61 28 chr4 63710736 63711278 -120577384 - MER97b DNA MER1_type? -453 600 41 2230 79 9 64 chr4 63711301 63711629 -120577033 - AluSq SINE Alu -3 310 1 2099 103 29 15 chr4 63711632 63711973 -120576689 - L1PA10 LINE L1 0 6168 5823 604 82 0 0 chr4 63711973 63712058 -120576604 + L1P4 LINE L1 5594 5678 -490 800 185 0 0 chr4 63712369 63712499 -120576163 + AluJo SINE Alu 1 130 -172 348 111 0 0 chr4 63715886 63715949 -120572713 + (CA)n Simple_repeat Simple_repeat 2 64 0 2470 166 29 15 chr4 63716049 63716182 -120572480 + L1PB4 LINE L1 5657 5787 -386 354 23 0 0 chr4 63716182 63716225 -120572437 + (CA)n Simple_repeat Simple_repeat 2 44 0 2470 166 29 15 chr4 63716225 63716601 -120572061 + L1PB4 LINE L1 5787 6173 0 25 65 0 0 chr4 63717516 63717562 -120571100 + AT_rich Low_complexity Low_complexity 1 46 0 261 0 0 0 chr4 63717999 63718028 -120570634 + (TG)n Simple_repeat Simple_repeat 2 30 0 220 237 0 40 chr4 63718028 63718104 -120570558 + (TATATG)n Simple_repeat Simple_repeat 5 77 0 32 0 0 0 chr4 63718217 63718249 -120570413 + AT_rich Low_complexity Low_complexity 1 32 0 1067 210 47 89 chr4 63719130 63719534 -120569128 + MLT1B LTR MaLR 4 390 0 2130 102 3 25 chr4 63719858 63720173 -120568489 + AluY SINE Alu 1 308 -3 1456 113 5 5 chr4 63720238 63720459 -120568203 - pTR5 LTR ERV1 -2046 392 172 357 214 31 20 chr4 63720462 63720560 -120568102 - LTR30 LTR ERV1 -80 642 544 4480 129 150 32 chr4 63720560 63721566 -120567096 - pTR5 LTR ERV1 -413 2025 741 3985 75 99 5 chr4 63722000 63722577 -120566085 - L1PA7 LINE L1 -2 6152 5522 2235 81 3 0 chr4 63722579 63722886 -120565776 - L1PA7 LINE L1 -989 5157 4850 22 35 0 0 chr4 63722916 63722945 -120565717 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 63722971 63722993 -120565669 + AT_rich Low_complexity Low_complexity 1 22 0 867 153 7 33 chr4 63723725 63723875 -120564787 + AluJo SINE Alu 137 282 -30 219 36 0 0 chr4 63723875 63723903 -120564759 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 2346 80 0 13 chr4 63724057 63724370 -120564292 - AluY SINE Alu -2 309 1 573 206 171 25 chr4 63724446 63724645 -120564017 - MIR SINE MIR -2 260 33 1755 238 58 103 chr4 63724693 63725344 -120563318 - MLT1E2 LTR MaLR -2 624 1 1458 268 41 72 chr4 63725344 63725535 -120563127 + MLT1E LTR MaLR 52 247 -346 999 149 0 6 chr4 63725535 63725696 -120562966 - L1PA16 LINE L1 -9 6157 5998 1458 268 41 72 chr4 63725696 63726063 -120562599 + MLT1E LTR MaLR 247 593 0 201 367 57 62 chr4 63726256 63726433 -120562229 - L2 LINE L2 -106 3166 2991 265 325 106 62 chr4 63726586 63727183 -120561479 - L2 LINE L2 -560 2754 2132 21 36 0 0 chr4 63727443 63727471 -120561191 + AT_rich Low_complexity Low_complexity 1 28 0 235 87 72 0 chr4 63727471 63727540 -120561122 + (TATAA)n Simple_repeat Simple_repeat 2 75 0 415 278 146 9 chr4 63727585 63727797 -120560865 + MIR SINE MIR 3 243 -19 549 182 0 0 chr4 63728037 63728125 -120560537 + Tigger7 DNA MER2_type 183 270 -280 * 1186 164 10 0 chr4 63728120 63728315 -120560347 + Tigger7 DNA MER2_type 2295 2491 0 325 302 19 9 chr4 63728600 63728706 -120559956 + CT-rich Low_complexity Low_complexity 2 108 0 442 310 75 14 chr4 63729133 63729346 -120559316 - L1ME LINE L1 -502 5660 5442 537 307 89 6 chr4 63733030 63733209 -120555453 + MIR SINE MIR 53 246 -16 407 268 36 29 chr4 63733686 63733824 -120554838 + MIR3 SINE MIR 23 161 -47 293 250 17 100 chr4 63734874 63734994 -120553668 + L3 LINE CR1 1155 1264 -313 186 368 62 42 chr4 63735038 63735231 -120553431 + L3 LINE CR1 1358 1554 -23 1916 102 11 14 chr4 63736787 63737071 -120551591 + AluSc SINE Alu 27 309 0 26 0 0 0 chr4 63737132 63737158 -120551504 + AT_rich Low_complexity Low_complexity 1 26 0 421 309 133 45 chr4 63737264 63737657 -120551005 + L2 LINE L2 2809 3311 -2 308 268 98 24 chr4 63738260 63738383 -120550279 - MER94 DNA DNA 0 134 3 1911 152 79 15 chr4 63739995 63740337 -120548325 - THE1B LTR MaLR 0 364 1 1592 238 24 60 chr4 63740520 63741024 -120547638 + MLT1D LTR MaLR 20 505 0 2144 244 53 11 chr4 63741141 63741689 -120546973 + MLT1E2 LTR MaLR 56 626 0 206 345 55 9 chr4 63742400 63742510 -120546152 - MIR SINE MIR -124 138 24 1605 133 4 4 chr4 63743368 63743602 -120545060 + AluSx SINE Alu 7 240 -72 381 209 11 55 chr4 63744819 63744910 -120543752 - L2 LINE L2 0 3313 3227 28 61 0 0 chr4 63745016 63745065 -120543597 + AT_rich Low_complexity Low_complexity 1 49 0 32 43 0 0 chr4 63745245 63745291 -120543371 + AT_rich Low_complexity Low_complexity 1 46 0 220 226 0 19 chr4 63745308 63745361 -120543301 + T-rich Low_complexity Low_complexity 2 53 0 24 0 0 0 chr4 63745421 63745445 -120543217 + AT_rich Low_complexity Low_complexity 1 24 0 1775 178 7 7 chr4 63746101 63746405 -120542257 + AluJb SINE Alu 1 304 -8 501 147 28 9 chr4 63746417 63746526 -120542136 + GA-rich Low_complexity Low_complexity 2 112 0 1234 219 17 14 chr4 63748381 63748673 -120539989 - MLT1C LTR MaLR 0 467 175 659 193 12 53 chr4 63748657 63748828 -120539834 - MLT1C LTR MaLR -247 220 57 * 227 325 56 32 chr4 63749522 63749648 -120539014 + MLT1J2 LTR MaLR 204 332 -118 2061 121 24 0 chr4 63749889 63750179 -120538483 - AluSc SINE Alu -12 297 1 4933 58 2 3 chr4 63751133 63751757 -120536905 + L1PA5 LINE L1 5532 6154 0 216 86 0 0 chr4 63751787 63751822 -120536840 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 385 312 145 7 chr4 63752222 63752360 -120536302 - MIR3 SINE MIR -5 203 47 22 0 0 0 chr4 63752444 63752466 -120536196 + AT_rich Low_complexity Low_complexity 1 22 0 9720 166 56 17 chr4 63752556 63757027 -120531635 + L1PB1 LINE L1 2 4821 -2041 2210 111 7 0 chr4 63757027 63757325 -120531337 - AluSq SINE Alu -13 300 1 9720 166 56 17 chr4 63757325 63757522 -120531140 + L1PB1 LINE L1 4821 5009 -1853 5430 98 19 73 chr4 63757516 63758183 -120530479 + L1PB1 LINE L1 5875 6576 -291 * 234 0 0 0 chr4 63758183 63758209 -120530453 + (TG)n Simple_repeat Simple_repeat 2 27 0 5430 98 19 73 chr4 63758209 63758460 -120530202 + L1PB1 LINE L1 6576 6733 -134 2323 72 0 16 chr4 63758460 63758766 -120529896 + AluY SINE Alu 1 301 -10 5430 98 19 73 chr4 63758766 63758892 -120529770 + L1PB1 LINE L1 6733 6864 -3 22 0 0 0 chr4 63758914 63758936 -120529726 + AT_rich Low_complexity Low_complexity 1 22 0 345 119 24 12 chr4 63760149 63760233 -120528429 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 21 57 0 0 chr4 63760971 63761006 -120527656 + AT_rich Low_complexity Low_complexity 1 35 0 4829 162 26 38 chr4 63761498 63762437 -120526225 - L1MA9 LINE L1 0 6312 5386 521 139 0 28 chr4 63762556 63762664 -120525998 - L1MA9 LINE L1 -933 5358 5254 21 0 0 0 chr4 63762665 63762686 -120525976 + AT_rich Low_complexity Low_complexity 1 21 0 5475 91 1 0 chr4 63762686 63763435 -120525227 - L1PA10 LINE L1 -3 6165 5416 884 79 0 0 chr4 63763435 63763561 -120525101 + L1P LINE L1 4296 4421 -1725 475 294 92 70 chr4 63763691 63764161 -120524501 + L1ME3 LINE L1 5486 5965 -197 1544 155 63 7 chr4 63764219 63764503 -120524159 + AluJo SINE Alu 11 310 -2 28 29 0 0 chr4 63764688 63764723 -120523939 + AT_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr4 63764741 63764775 -120523887 + AT_rich Low_complexity Low_complexity 1 34 0 77 12 0 0 chr4 63764811 63764895 -120523767 + AT_rich Low_complexity Low_complexity 1 84 0 535 252 47 80 chr4 63765132 63765406 -120523256 - L2 LINE L2 -9 3304 3040 316 323 110 6 chr4 63766075 63766239 -120522423 + MIR3 SINE MIR 22 202 -6 443 213 32 0 chr4 63766465 63766559 -120522103 - L2 LINE L2 -8 3264 3168 186 43 0 0 chr4 63767879 63767902 -120520760 + (TG)n Simple_repeat Simple_repeat 1 23 0 801 286 92 44 chr4 63768053 63768577 -120520085 - MLT1H1 LTR MaLR -2 553 5 302 317 144 5 chr4 63768672 63768874 -120519788 + MIR SINE MIR 20 249 -13 1568 190 111 4 chr4 63769056 63769472 -120519190 + MLT2B3 LTR ERVL 1 507 -46 346 175 0 50 chr4 63769409 63769489 -120519173 + Ricksha DNA DNA 782 857 -1189 * 2209 87 3 13 chr4 63769515 63769813 -120518849 - AluSq SINE Alu -18 295 1 199 350 12 12 chr4 63770003 63770083 -120518579 - L2 LINE L2 -6 3266 3187 649 219 8 0 chr4 63770660 63770783 -120517879 - FLAM_C SINE Alu -19 124 1 52 30 0 0 chr4 63770879 63770945 -120517717 + AT_rich Low_complexity Low_complexity 1 66 0 23 0 0 0 chr4 63771119 63771142 -120517520 + AT_rich Low_complexity Low_complexity 1 23 0 232 328 109 16 chr4 63771871 63771999 -120516663 - L2 LINE L2 0 3313 3174 252 282 35 0 chr4 63772084 63772169 -120516493 - MER94 DNA DNA -36 98 11 2024 201 37 41 chr4 63772169 63772682 -120515980 + Charlie1b DNA MER1_type 1 511 -12 191 333 0 18 chr4 63772821 63772878 -120515784 - L2 LINE L2 -33 3280 3225 22 0 0 0 chr4 63772888 63772910 -120515752 + AT_rich Low_complexity Low_complexity 1 22 0 1640 144 30 0 chr4 63773344 63773614 -120515048 + MER7A DNA MER2_type 2 277 -69 696 266 50 59 chr4 63773673 63773993 -120514669 + MER83C LTR ERV1 47 363 -10 386 208 42 0 chr4 63774000 63774072 -120514590 + MER7A DNA MER2_type 261 335 -1 21 57 0 0 chr4 63774094 63774129 -120514533 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr4 63774861 63774898 -120513764 + AT_rich Low_complexity Low_complexity 1 37 0 195 375 50 0 chr4 63776818 63776898 -120511764 + L2 LINE L2 3177 3260 -12 967 151 47 0 chr4 63778763 63778935 -120509727 - MER39B LTR ERV1 0 653 474 2070 206 24 7 chr4 63778976 63779399 -120509263 + LOR1b LTR ERV1 32 461 0 * 3224 108 11 4 chr4 63779399 63779871 -120508791 - MER39B LTR ERV1 -176 477 3 230 286 14 0 chr4 63779914 63779984 -120508678 + GA-rich Low_complexity Low_complexity 3 73 0 1655 147 56 56 chr4 63780003 63780378 -120508284 + THE1C LTR MaLR 1 375 0 302 289 10 21 chr4 63780443 63780540 -120508122 - L2 LINE L2 0 3313 3218 1006 207 58 0 chr4 63780540 63780748 -120507914 - MER58A DNA MER1_type 0 224 5 4302 20 0 0 chr4 63781657 63782156 -120506506 - L1PA2 LINE L1 -5 6150 5652 593 306 0 6 chr4 63782619 63782779 -120505883 + MIR SINE MIR 60 218 -44 226 167 0 0 chr4 63783292 63783328 -120505334 + MIR SINE MIR 215 250 -12 189 0 0 0 chr4 63784377 63784398 -120504264 + (CA)n Simple_repeat Simple_repeat 2 22 0 214 349 75 28 chr4 63784904 63785010 -120503652 + L2 LINE L2 3154 3264 -8 22 99 0 0 chr4 63785110 63785181 -120503481 + AT_rich Low_complexity Low_complexity 1 71 0 333 333 38 15 chr4 63786383 63786515 -120502147 + MIR SINE MIR 20 154 -108 189 326 28 52 chr4 63787532 63787723 -120500939 + MIR3 SINE MIR 5 217 -45 1066 292 22 29 chr4 63789348 63789762 -120498900 + L1MCb LINE L1 39 449 -5596 1083 276 42 28 chr4 63789963 63790408 -120498254 + L1MCb LINE L1 570 1006 -5039 735 178 74 30 chr4 63790405 63790635 -120498027 + L1MCb LINE L1 1259 1498 -5066 * 235 265 24 0 chr4 63790650 63790733 -120497929 + A-rich Low_complexity Low_complexity 5 89 0 418 217 69 29 chr4 63790745 63790920 -120497742 + L1MCb LINE L1 1539 1720 -4844 2043 113 13 29 chr4 63791140 63791451 -120497211 - AluSg SINE Alu -4 306 1 27 29 0 0 chr4 63791451 63791485 -120497177 + AT_rich Low_complexity Low_complexity 1 34 0 384 296 85 58 chr4 63791632 63791821 -120496841 - MIR SINE MIR -41 221 28 184 322 203 23 chr4 63793233 63793410 -120495252 - MIR SINE MIR -1 261 53 424 211 49 8 chr4 63793923 63794046 -120494616 - LTR37A LTR ERV1 -2 424 297 441 158 0 0 chr4 63795254 63795336 -120493326 + (TA)n Simple_repeat Simple_repeat 1 82 0 435 277 0 0 chr4 63795340 63795434 -120493228 + MER82 DNA MER2_type 1 94 -559 337 335 32 32 chr4 63795481 63795669 -120492993 - MIR SINE MIR -66 196 9 695 278 30 5 chr4 63795705 63795903 -120492759 + MER82 DNA MER2_type 444 646 -7 27 0 0 0 chr4 63796188 63796215 -120492447 + AT_rich Low_complexity Low_complexity 1 27 0 8938 27 7 0 chr4 63796246 63798092 -120490570 - L1PA3 LINE L1 0 6155 4302 5418 54 0 0 chr4 63798092 63798776 -120489886 - L1P LINE L1 -5459 687 4 2061 120 0 0 chr4 63798812 63799104 -120489558 - AluSg SINE Alu -18 292 1 1881 115 35 3 chr4 63799621 63799907 -120488755 + AluSc SINE Alu 1 295 -14 1395 333 56 44 chr4 63800468 63800896 -120487766 - HERVL LTR ERVL -2050 3604 3182 2190 112 0 3 chr4 63800896 63801201 -120487461 - AluSx SINE Alu -8 304 1 1395 333 56 44 chr4 63801201 63801559 -120487103 - HERVL LTR ERVL -2472 3182 2799 2054 51 0 102 chr4 63801559 63801910 -120486752 - AluY SINE Alu 0 319 1 1395 333 56 44 chr4 63801910 63802180 -120486482 - HERVL LTR ERVL -2855 2799 2534 809 258 151 4 chr4 63802237 63802508 -120486154 - MLT-int LTR MaLR -942 793 483 22 0 0 0 chr4 63802562 63802584 -120486078 + AT_rich Low_complexity Low_complexity 1 22 0 309 261 176 7 chr4 63802755 63802851 -120485811 - L1MEc LINE L1 -1395 4820 4742 1942 138 0 29 chr4 63802851 63803162 -120485500 - AluSx SINE Alu -10 302 1 309 261 176 7 chr4 63803162 63803207 -120485455 - L1MEc LINE L1 -1473 4742 4655 1141 280 131 48 chr4 63803236 63803772 -120484890 + MLT1E LTR MaLR 12 591 -2 1474 170 17 0 chr4 63803972 63804260 -120484402 - L1MA7 LINE L1 -3 6288 5996 1202 288 107 19 chr4 63804386 63805212 -120483450 - L1MEc LINE L1 -1825 4390 3493 1752 195 67 6 chr4 63805212 63805556 -120483106 - MER45B DNA AcHobo -675 365 1 849 279 97 12 chr4 63805556 63805969 -120482693 + L1ME2 LINE L1 5707 6154 -10 22 35 0 0 chr4 63806033 63806062 -120482600 + AT_rich Low_complexity Low_complexity 1 29 0 786 299 51 22 chr4 63806080 63806494 -120482168 - L1MEc LINE L1 -3041 3174 2749 3944 229 74 12 chr4 63806582 63807715 -120480947 - Charlie1 DNA MER1_type -28 2733 1531 308 224 17 0 chr4 63807747 63807805 -120480857 - Charlie1 DNA MER1_type -2702 59 1 279 0 0 0 chr4 63807890 63807921 -120480741 + (TG)n Simple_repeat Simple_repeat 1 31 0 991 143 34 6 chr4 63807923 63808098 -120480564 - L1PA13 LINE L1 -5 6158 5979 4926 179 11 10 chr4 63808104 63809028 -120479634 + L1PA12 LINE L1 1817 2741 -3405 9116 159 19 3 chr4 63809029 63811307 -120477355 + L1PA12 LINE L1 3677 6125 -43 339 289 65 7 chr4 63811280 63811461 -120477201 - L1MEc LINE L1 -3794 2421 2269 * 26 30 0 0 chr4 63811547 63811580 -120477082 + AT_rich Low_complexity Low_complexity 1 33 0 334 274 30 52 chr4 63811646 63811781 -120476881 + MER77 LTR ERV1 66 197 -408 490 325 87 40 chr4 63811825 63812371 -120476291 + MER77 LTR ERV1 155 699 -8 23 54 0 0 chr4 63812405 63812442 -120476220 + AT_rich Low_complexity Low_complexity 1 37 0 370 268 79 37 chr4 63812946 63813300 -120475362 + L1M4 LINE L1 2260 2628 -3518 217 153 17 34 chr4 63813308 63813367 -120475295 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 455 305 87 83 chr4 63813378 63813590 -120475072 + L1M4 LINE L1 2879 3089 -3057 1992 128 54 17 chr4 63813590 63813941 -120474721 - THE1B LTR MaLR 0 364 1 10430 94 47 3 chr4 63813941 63815454 -120473208 - THE1B-int LTR MaLR 0 1580 1 2038 121 63 23 chr4 63815454 63815802 -120472860 - THE1B LTR MaLR 0 364 3 455 305 87 83 chr4 63815802 63816482 -120472180 + L1M4 LINE L1 3088 3777 -2369 301 233 24 97 chr4 63816517 63816654 -120472008 + L1ME3A LINE L1 5601 5729 -433 318 305 40 50 chr4 63816723 63816923 -120471739 + L1ME3A LINE L1 5754 5951 -219 22 0 0 0 chr4 63817649 63817671 -120470991 + AT_rich Low_complexity Low_complexity 1 22 0 1912 131 26 9 chr4 63817952 63818343 -120470319 + LTR7 LTR ERV1 1 450 0 1404 91 0 48 chr4 63818732 63818980 -120469682 + AluY SINE Alu 82 319 0 317 314 59 64 chr4 63819152 63819372 -120469290 - L1ME LINE L1 -543 5578 5360 25 51 0 0 chr4 63819420 63819459 -120469203 + AT_rich Low_complexity Low_complexity 1 39 0 2035 118 3 7 chr4 63819939 63820306 -120468356 - AluSx SINE Alu 0 312 1 270 271 86 0 chr4 63820314 63820454 -120468208 - L1ME LINE L1 -1446 4700 4549 181 269 105 70 chr4 63820502 63820673 -120467989 - L2 LINE L2 -1 3312 3136 532 281 172 59 chr4 63822670 63823094 -120465568 - L2 LINE L2 -5 3308 2837 333 366 38 27 chr4 63823306 63823489 -120465173 - L2 LINE L2 -595 2719 2535 4544 188 40 3 chr4 63823512 63824461 -120464201 - L1MA8 LINE L1 -4 6287 5304 663 226 0 0 chr4 63824467 63824591 -120464071 - AluJb SINE Alu -188 124 1 1874 204 70 2 chr4 63824597 63825039 -120463623 - L1MA8 LINE L1 -825 5321 4850 1086 205 43 13 chr4 63825040 63825274 -120463388 + AluJo SINE Alu 60 300 -12 8672 188 33 16 chr4 63825274 63825568 -120463094 - L1MA8 LINE L1 -1291 4855 4568 1915 201 36 5 chr4 63825568 63825952 -120462710 - MSTD LTR MaLR 0 396 1 8672 188 33 16 chr4 63825952 63827598 -120461064 - L1MA8 LINE L1 -1578 4568 2881 2188 89 3 0 chr4 63828250 63828562 -120460100 - AluSp SINE Alu 0 313 1 365 324 26 23 chr4 63828703 63829012 -120459650 - L1M4 LINE L1 -1372 4774 4465 1398 214 17 50 chr4 63829018 63829377 -120459285 + MLT1A1 LTR MaLR 7 353 -12 23 78 0 0 chr4 63829381 63829432 -120459230 + AT_rich Low_complexity Low_complexity 1 51 0 738 292 46 50 chr4 63829608 63829868 -120458794 + MIR SINE MIR 3 261 -1 212 332 130 24 chr4 63829881 63830089 -120458573 + L2 LINE L2 2424 2653 -661 25 51 0 0 chr4 63830546 63830585 -120458077 + AT_rich Low_complexity Low_complexity 1 39 0 180 0 0 0 chr4 63831189 63831209 -120457453 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 930 158 23 23 chr4 63833589 63833760 -120454902 + AluJo SINE Alu 1 171 -141 1958 117 7 11 chr4 63834413 63834749 -120453913 - AluSx SINE Alu 0 335 1 27 29 0 0 chr4 63835016 63835050 -120453612 + AT_rich Low_complexity Low_complexity 1 34 0 1686 170 3 7 chr4 63835052 63835340 -120453322 - AluJb SINE Alu -25 287 1 727 189 0 0 chr4 63835343 63835470 -120453192 - AluJo/FLAM SINE Alu -175 127 1 231 304 67 44 chr4 63835934 63836069 -120452593 + LTR33 LTR ERVL 59 196 -325 282 345 71 10 chr4 63836157 63836354 -120452308 + LTR33 LTR ERVL 307 515 -6 286 143 31 31 chr4 63836542 63836640 -120452022 + GA-rich Low_complexity Low_complexity 3 100 0 3040 271 69 32 chr4 63836648 63836979 -120451683 + L1MEc LINE L1 121 438 -5777 351 0 0 0 chr4 63836979 63837018 -120451644 + (TG)n Simple_repeat Simple_repeat 1 39 0 3040 271 69 32 chr4 63837018 63838146 -120450516 + L1MEc LINE L1 438 1600 -4615 849 181 58 0 chr4 63838425 63838596 -120450066 + L1PA15 LINE L1 5171 5351 -795 488 130 0 0 chr4 63838743 63838820 -120449842 - AluSp/q SINE Alu -10 303 227 1053 61 0 0 chr4 63838859 63838991 -120449671 - L1PA6 LINE L1 -11 6143 6012 5143 124 23 17 chr4 63838996 63839154 -120449508 + L1PA15 LINE L1 5336 5492 -673 2292 90 3 3 chr4 63839154 63839454 -120449208 + AluSq SINE Alu 7 306 -7 5143 124 23 17 chr4 63839454 63840115 -120448547 + L1PA15 LINE L1 5492 6160 -5 495 263 112 44 chr4 63840704 63840909 -120447753 + MIR SINE MIR 40 258 -4 23 54 0 0 chr4 63842002 63842039 -120446623 + AT_rich Low_complexity Low_complexity 1 37 0 2249 93 0 0 chr4 63842624 63842915 -120445747 + AluSg1 SINE Alu 1 291 -18 778 235 113 66 chr4 63843250 63843569 -120445093 + LTR16C LTR ERVL 148 481 -10 325 318 48 0 chr4 63844861 63844987 -120443675 - MIR SINE MIR -17 245 114 265 345 27 0 chr4 63845053 63845163 -120443499 + MIR SINE MIR 51 163 -99 31 26 0 0 chr4 63845651 63845689 -120442973 + AT_rich Low_complexity Low_complexity 1 38 0 1725 150 13 33 chr4 63845837 63846143 -120442519 + MLT2D LTR ERVL 2 301 -113 3648 145 28 68 chr4 63848781 63848935 -120439727 + LTR62 LTR ERVK 1 160 -559 2134 83 0 58 chr4 63848935 63849292 -120439370 + AluY SINE Alu 4 342 0 3648 145 28 68 chr4 63849292 63849880 -120438782 + LTR62 LTR ERVK 160 714 -5 2073 136 0 7 chr4 63850866 63851175 -120437487 + AluSq SINE Alu 1 307 -6 21 57 0 0 chr4 63852099 63852134 -120436528 + AT_rich Low_complexity Low_complexity 1 35 0 342 181 42 0 chr4 63852331 63852403 -120436259 - MER5A DNA MER1_type -77 112 38 295 254 56 0 chr4 63854181 63854252 -120434410 + MIR SINE MIR 120 194 -68 279 290 69 53 chr4 63854488 63854619 -120434043 + MIR SINE MIR 123 255 -7 364 271 39 39 chr4 63854748 63854877 -120433785 + MIR SINE MIR 24 152 -56 4753 27 0 0 chr4 63855065 63855621 -120433041 + L1PA5 LINE L1 5598 6153 -1 853 182 77 0 chr4 63855871 63856041 -120432621 + MER5A DNA MER1_type 1 183 -6 334 212 68 51 chr4 63856172 63856290 -120432372 + L1MC4 LINE L1 6601 6720 -1322 * 353 279 8 39 chr4 63856201 63856330 -120432332 - L1MC4 LINE L1 -1323 6719 6595 599 295 12 6 chr4 63858394 63858560 -120430102 + MER5B DNA MER1_type 4 170 -8 1999 91 0 54 chr4 63858951 63859247 -120429415 - AluSg SINE Alu -30 280 1 405 345 60 11 chr4 63859259 63859540 -120429122 - L1ME3A LINE L1 -274 5896 5602 196 306 18 27 chr4 63859613 63859724 -120428938 - MIR SINE MIR -1 261 152 412 320 85 35 chr4 63859759 63859959 -120428703 - MIR SINE MIR -34 228 19 2167 128 3 0 chr4 63860443 63860749 -120427913 - AluSx SINE Alu -5 307 1 1531 241 42 37 chr4 63860881 63861363 -120427299 + MLT1D LTR MaLR 1 484 -21 27334 101 5 4 chr4 63861480 63866574 -120422088 - L1PA7 LINE L1 0 6154 1060 450 110 0 14 chr4 63866675 63866748 -120421914 + L1PA6 LINE L1 5827 5898 -256 1834 196 117 5 chr4 63866812 63867231 -120421431 + MER31B LTR ERV1 1 466 0 186 214 24 0 chr4 63868462 63868504 -120420158 + L2 LINE L2 3214 3256 -16 915 121 0 0 chr4 63868601 63868733 -120419929 - AluSc SINE Alu -7 302 171 2517 69 6 6 chr4 63868833 63869168 -120419494 + L1PA6 LINE L1 5820 6154 0 182 306 42 14 chr4 63869599 63869671 -120418991 - MIR SINE MIR -23 239 166 288 364 57 14 chr4 63869730 63869870 -120418792 - MIR SINE MIR -111 151 6 262 219 162 9 chr4 63873148 63873253 -120415409 - MLT1L LTR MaLR 0 615 495 29730 47 34 2 chr4 63873628 63877610 -120411052 - L1P LINE L1 -2036 4110 5 40 37 0 0 chr4 63877814 63877868 -120410794 + AT_rich Low_complexity Low_complexity 1 54 0 2160 27 0 0 chr4 63877989 63878245 -120410417 - L1PA4 LINE L1 -2 6153 5898 16685 37 1 0 chr4 63878245 63880569 -120408093 + L1P2 LINE L1 3279 5604 -551 306 309 93 29 chr4 63880783 63880922 -120407740 + HAL1 LINE L1 1625 1772 -735 1160 259 47 39 chr4 63880929 63881315 -120407347 - MLT1B LTR MaLR -1 389 1 21 0 0 0 chr4 63881477 63881498 -120407164 + AT_rich Low_complexity Low_complexity 1 21 0 203 167 48 0 chr4 63881527 63881569 -120407093 + A-rich Low_complexity Low_complexity 5 48 0 229 188 58 14 chr4 63882011 63882080 -120406582 + HAL1b LINE L1 1048 1119 -229 * 263 280 68 8 chr4 63882075 63882193 -120406469 + L1ME4a LINE L1 5991 6115 -6 784 302 36 4 chr4 63882620 63882868 -120405794 - MIR SINE MIR 0 262 7 2616 125 45 2 chr4 63883268 63883716 -120404946 + L1MA5A LINE L1 5828 6294 -3 678 207 17 0 chr4 63883748 63883894 -120404768 + FLAM_A SINE Alu 1 148 0 3181 157 17 12 chr4 63883901 63883937 -120404725 + L1PA13 LINE L1 4707 4741 -1427 2538 101 10 41 chr4 63883937 63884324 -120404338 + THE1C LTR MaLR 1 375 0 3181 157 17 12 chr4 63884324 63885362 -120403300 + L1PA13 LINE L1 4741 5782 -386 2238 114 3 0 chr4 63885362 63885736 -120402926 + AluSc SINE Alu 1 375 0 2482 129 2 2 chr4 63885736 63886130 -120402532 + L1PA13 LINE L1 5769 6162 -1 450 315 69 31 chr4 63886702 63887077 -120401585 - L1ME LINE L1 -608 5558 5162 4667 162 13 28 chr4 63887078 63888095 -120400567 - L1PB4 LINE L1 -2 6154 5150 507 215 87 6 chr4 63888101 63888299 -120400363 + L1M4 LINE L1 4923 5133 -1013 180 182 0 0 chr4 63889155 63889199 -120399463 + (TG)n Simple_repeat Simple_repeat 1 44 0 341 301 48 0 chr4 63889894 63889977 -120398685 + L2 LINE L2 3134 3220 -52 2385 59 0 30 chr4 63891505 63891808 -120396854 - AluY SINE Alu -15 296 3 274 312 80 16 chr4 63893861 63893986 -120394676 - MIR SINE MIR -45 217 85 8030 68 0 0 chr4 63894802 63895896 -120392766 + L1P LINE L1 4084 5177 -969 590 86 0 0 chr4 63896011 63896092 -120392570 - THE1C LTR MaLR -32 343 263 442 317 84 28 chr4 63896495 63896779 -120391883 - L2 LINE L2 -1 3312 3013 1253 221 36 34 chr4 63896787 63897145 -120391517 - MLT1A2 LTR MaLR -13 361 3 2668 314 97 27 chr4 63897147 63897964 -120390698 - L2 LINE L2 -296 3017 2259 1637 158 68 46 chr4 63897964 63898331 -120390331 - THE1C LTR MaLR 0 375 1 2668 314 97 27 chr4 63898331 63899008 -120389654 - L2 LINE L2 -1054 2259 1417 2720 135 83 43 chr4 63899474 63900051 -120388611 - LTR18B LTR ERVL -14 600 1 1463 137 64 73 chr4 63900259 63900601 -120388061 - LTR18B LTR ERVL -7 607 269 3742 141 35 67 chr4 63900623 63901896 -120386766 + pTR5 LTR ERV1 743 2295 -143 1272 158 164 46 chr4 63901915 63902219 -120386443 - LTR18B LTR ERVL -274 340 1 958 301 46 17 chr4 63902482 63902898 -120385764 - LTR16A LTR ERVL -5 445 18 266 284 0 0 chr4 63903365 63903432 -120385230 + (TAG)n Simple_repeat Simple_repeat 2 68 0 3295 97 18 0 chr4 63903678 63904123 -120384539 + MLT2A2 LTR ERVL 1 453 0 286 330 0 0 chr4 63904182 63904282 -120384380 - Charlie8 DNA MER1_type -2192 225 126 21 0 0 0 chr4 63904320 63904341 -120384321 + AT_rich Low_complexity Low_complexity 1 21 0 407 264 26 84 chr4 63905681 63905836 -120382826 + MIR SINE MIR 58 203 -59 676 221 42 0 chr4 63906905 63907095 -120381567 + Charlie5 DNA MER1_type 3 200 -2412 * 876 201 52 19 chr4 63907088 63907357 -120381305 + Charlie5 DNA MER1_type 2347 2624 0 397 328 26 9 chr4 63907441 63907557 -120381105 - MIR SINE MIR -119 143 26 191 299 39 110 chr4 63909133 63909287 -120379375 + L2 LINE L2 264 406 -2908 814 308 95 48 chr4 63910722 63911353 -120377309 + L2 LINE L2 2401 3059 -254 313 239 0 15 chr4 63911424 63911491 -120377171 + L2 LINE L2 3236 3301 -12 300 289 36 0 chr4 63911488 63911571 -120377091 + MIR3 SINE MIR 100 185 -23 * 190 267 99 69 chr4 63913000 63913101 -120375561 + L2 LINE L2 3151 3254 -18 5246 198 47 10 chr4 63913920 63915674 -120372988 + L1MC1 LINE L1 4504 6320 -13 1323 168 93 31 chr4 63915858 63916149 -120372513 + L1ME1 LINE L1 5407 5715 -451 1341 284 96 44 chr4 63916189 63916547 -120372115 - MER21B LTR ERV1 -157 706 368 1930 87 4 4 chr4 63916547 63916801 -120371861 - AluSg SINE Alu -16 294 41 1341 284 96 44 chr4 63916801 63917098 -120371564 - MER21B LTR ERV1 -495 368 17 1065 219 72 33 chr4 63917159 63917492 -120371170 + L1ME1 LINE L1 5811 6156 -10 1491 102 5 5 chr4 63918851 63919056 -120369606 + AluSc SINE Alu 1 205 -104 9178 26 1 0 chr4 63919156 63921011 -120367651 + L1PA2 LINE L1 4296 6151 -4 573 318 25 13 chr4 63921983 63922500 -120366162 - L1M4 LINE L1 -686 5488 4966 201 226 0 0 chr4 63922573 63922626 -120366036 + (CATATA)n Simple_repeat Simple_repeat 1 53 0 249 313 92 0 chr4 63922775 63922906 -120365756 - L1M4 LINE L1 -1493 4653 4511 247 277 51 0 chr4 63922946 63923073 -120365589 - L1M4 LINE L1 -1751 4395 4258 711 260 83 5 chr4 63923135 63923339 -120365323 + MIR SINE MIR 12 231 -31 339 352 15 15 chr4 63923341 63923537 -120365125 - L1M4 LINE L1 -1999 4147 3952 462 251 73 21 chr4 63923547 63923738 -120364924 + LTR68 LTR ERV1 9 209 -531 231 209 67 75 chr4 63923773 63923907 -120364755 + MER67C LTR ERV1 72 204 -506 323 311 74 42 chr4 63924177 63924460 -120364202 - L1M4 LINE L1 -2194 3952 3661 21 57 0 0 chr4 63924627 63924662 -120364000 + AT_rich Low_complexity Low_complexity 1 35 0 617 298 47 47 chr4 63924833 63925044 -120363618 - L1M4 LINE L1 -2882 3264 3051 2297 98 0 0 chr4 63925044 63925339 -120363323 - AluSg SINE Alu -15 295 1 617 298 47 47 chr4 63925339 63925489 -120363173 - L1M4 LINE L1 -3094 3052 2903 180 263 88 0 chr4 63925891 63925948 -120362714 + MIR3 SINE MIR 111 172 -36 712 354 145 48 chr4 63927002 63927380 -120361282 - L3 LINE CR1 -23 1554 1214 2300 96 7 0 chr4 63927380 63927682 -120360980 - AluSp SINE Alu -9 304 1 712 354 145 48 chr4 63927682 63928493 -120360169 - L3 LINE CR1 -363 1214 249 197 130 283 22 chr4 63928616 63928662 -120360000 + L2 LINE L2 3252 3309 -4 1693 248 101 19 chr4 63928733 63929208 -120359454 + MLT1E LTR MaLR 3 516 -77 225 0 0 0 chr4 63929279 63929304 -120359358 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 25 31 0 0 chr4 63929348 63929380 -120359282 + AT_rich Low_complexity Low_complexity 1 32 0 24 32 0 0 chr4 63930437 63930468 -120358194 + AT_rich Low_complexity Low_complexity 1 31 0 381 375 60 0 chr4 63931559 63931743 -120356919 - MIR SINE MIR -15 247 53 314 170 0 0 chr4 63931884 63931931 -120356731 - L2 LINE L2 -7 3265 3219 388 191 9 9 chr4 63932641 63932751 -120355911 + GA-rich Low_complexity Low_complexity 3 112 0 1805 158 38 0 chr4 63933142 63933434 -120355228 + AluSx SINE Alu 3 305 -7 21 0 0 0 chr4 63933792 63933813 -120354849 + AT_rich Low_complexity Low_complexity 1 21 0 30 59 0 0 chr4 63934219 63934270 -120354392 + AT_rich Low_complexity Low_complexity 1 51 0 2056 131 0 3 chr4 63934506 63934796 -120353866 - AluSg SINE Alu -21 289 1 180 262 99 99 chr4 63935999 63936140 -120352522 + L3b LINE CR1 1405 1545 -38 233 354 10 0 chr4 63936379 63936475 -120352187 + MIR3 SINE MIR 102 198 -10 537 329 47 0 chr4 63936920 63937090 -120351572 + MIR SINE MIR 6 183 -79 474 267 69 8 chr4 63937955 63938086 -120350576 + L2 LINE L2 35 173 -3141 3152 272 168 40 chr4 63938088 63939651 -120349011 + L2 LINE L2 1382 3164 -149 2397 84 0 0 chr4 63939651 63939949 -120348713 - AluY SINE Alu -13 298 1 3152 272 168 40 chr4 63939949 63940064 -120348598 + L2 LINE L2 3164 3263 -50 538 221 17 93 chr4 63940142 63940314 -120348348 - MIR SINE MIR 0 262 104 1070 225 150 54 chr4 63940314 63940757 -120347905 + MER39 LTR ERV1 1 666 -41 233 246 107 66 chr4 63940829 63940951 -120347711 + MIR SINE MIR 101 227 -35 1953 141 7 3 chr4 63943307 63943597 -120345065 - AluSx SINE Alu -21 291 1 303 93 0 0 chr4 63943817 63943860 -120344802 + (CA)n Simple_repeat Simple_repeat 2 44 0 225 311 33 0 chr4 63944118 63944179 -120344483 + MER91 DNA MER1_type 127 189 -1 511 268 68 50 chr4 63944409 63944459 -120344203 + MIR SINE MIR 39 87 -175 1582 154 70 57 chr4 63944459 63944530 -120344132 - THE1C LTR MaLR 0 375 306 2243 94 13 7 chr4 63944530 63944839 -120343823 + AluSq SINE Alu 1 311 -2 1582 154 70 57 chr4 63944839 63945137 -120343525 - THE1C LTR MaLR -69 306 1 511 268 68 50 chr4 63945137 63945306 -120343356 + MIR SINE MIR 87 262 0 450 0 0 0 chr4 63946468 63946518 -120342144 + (TG)n Simple_repeat Simple_repeat 1 50 0 189 317 33 0 chr4 63946623 63946683 -120341979 + L2 LINE L2 3239 3300 -13 2178 164 5 16 chr4 63947793 63948170 -120340492 + THE1C LTR MaLR 3 375 0 9897 124 9 47 chr4 63948170 63949812 -120338850 + THE1C-int LTR MaLR 1 1580 0 2317 133 11 13 chr4 63949812 63950188 -120338474 + THE1C LTR MaLR 1 375 0 477 96 48 0 chr4 63950298 63950381 -120338281 + L1MA5 LINE L1 6208 6294 -6 349 263 12 0 chr4 63951070 63951150 -120337512 + MLT1I LTR MaLR 329 409 0 240 371 137 25 chr4 63951342 63952073 -120336589 + L2 LINE L2 677 1489 -1825 481 355 83 34 chr4 63952206 63952677 -120335985 + L2 LINE L2 1858 2351 -963 1176 265 56 9 chr4 63952701 63953128 -120335534 + HAL1 LINE L1 1755 2201 -306 301 296 28 84 chr4 63953179 63953358 -120335304 + HAL1 LINE L1 2333 2501 -6 21 36 0 0 chr4 63953362 63953390 -120335272 + AT_rich Low_complexity Low_complexity 1 28 0 857 152 38 11 chr4 63953806 63953990 -120334672 - MER53 DNA DNA 0 189 1 732 187 8 15 chr4 63954090 63954224 -120334438 + AluJ SINE Alu 1 133 -169 191 200 0 18 chr4 63954237 63954292 -120334370 + GA-rich Low_complexity Low_complexity 3 56 0 * 543 160 11 46 chr4 63954287 63954462 -120334200 + G-rich Low_complexity Low_complexity 5 173 0 1018 172 0 0 chr4 63954462 63954631 -120334031 + AluJ SINE Alu 130 298 -14 25 31 0 0 chr4 63954722 63954754 -120333908 + AT_rich Low_complexity Low_complexity 1 32 0 3480 201 67 22 chr4 63955112 63956592 -120332070 - L1MB7 LINE L1 -2 6993 5450 1335 254 82 30 chr4 63956597 63957026 -120331636 - L1MB7 LINE L1 -6381 478 28 1936 141 10 10 chr4 63958860 63959158 -120329504 - AluSx SINE Alu -14 298 1 209 233 0 0 chr4 63959230 63959273 -120329389 + L2 LINE L2 2472 2514 -800 22 56 0 0 chr4 64009389 64009425 -120279237 + AT_rich Low_complexity Low_complexity 1 36 0 210 37 0 0 chr4 64009625 64009652 -120279010 + (TC)n Simple_repeat Simple_repeat 2 28 0 1563 162 64 93 chr4 64010495 64010695 -120277967 + MLT1A1 LTR MaLR 1 186 -179 8016 28 2 1 chr4 64010695 64011593 -120277069 + L1PA4 LINE L1 5254 6152 -3 1563 162 64 93 chr4 64011593 64011768 -120276894 + MLT1A1 LTR MaLR 186 365 0 1119 167 12 61 chr4 64011933 64012178 -120276484 + THE1C LTR MaLR 143 375 0 643 216 55 33 chr4 64012594 64012775 -120275887 - MIR SINE MIR 0 262 78 277 304 109 14 chr4 64013540 64013678 -120274984 - MER117 DNA MER1_type -5 192 42 183 156 0 0 chr4 64013920 64013952 -120274710 + A-rich Low_complexity Low_complexity 1 32 0 217 167 63 6 chr4 64013973 64014031 -120274631 - MER5B DNA MER1_type -16 167 113 234 0 0 0 chr4 64015644 64015670 -120272992 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 344 254 60 121 chr4 64015686 64015934 -120272728 + MLT1K LTR MaLR 352 584 -4 694 293 89 13 chr4 64015935 64016346 -120272316 - MLT1L LTR MaLR -1 614 151 2073 122 14 3 chr4 64017526 64017814 -120270848 - AluSx SINE Alu -21 291 1 6121 67 3 0 chr4 64018376 64019110 -120269552 - L1PA7 LINE L1 0 6154 5419 1878 167 7 3 chr4 64019369 64019674 -120268988 - AluJb SINE Alu -6 306 1 3035 158 24 20 chr4 64019848 64020302 -120268360 + MLT2B2 LTR ERVL 3 454 -61 204 40 0 0 chr4 64020302 64020327 -120268335 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 3035 158 24 20 chr4 64020327 64020342 -120268320 + MLT2B2 LTR ERVL 454 467 -48 633 119 0 0 chr4 64020342 64020443 -120268219 + (TA)n Simple_repeat Simple_repeat 1 101 0 3035 158 24 20 chr4 64020443 64020478 -120268184 + MLT2B2 LTR ERVL 467 510 -5 1873 136 39 0 chr4 64020627 64020747 -120267915 + AluSg SINE Alu 1 115 -195 432 0 0 0 chr4 64020747 64020795 -120267867 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 1873 136 39 0 chr4 64020795 64020953 -120267709 + AluSg SINE Alu 115 290 -20 508 250 144 16 chr4 64021992 64022180 -120266482 + L2 LINE L2 3052 3263 -50 3571 135 27 20 chr4 64022307 64022587 -120266075 + L1MC1 LINE L1 5584 5861 -472 2090 145 0 0 chr4 64022587 64022884 -120265778 - AluSx SINE Alu -15 297 1 3571 135 27 20 chr4 64022884 64023189 -120265473 + L1MC1 LINE L1 5861 6173 -160 2670 113 8 21 chr4 64023189 64023569 -120265093 + THE1C LTR MaLR 1 375 0 9786 107 86 3 chr4 64023569 64025027 -120263635 + THE1C-int LTR MaLR 1 1580 0 2988 78 16 3 chr4 64025027 64025397 -120263265 + THE1C LTR MaLR 1 375 0 1022 150 0 0 chr4 64025398 64025545 -120263117 + L1MC1 LINE L1 6170 6316 -17 1854 152 124 44 chr4 64025722 64026110 -120262552 + MSTA LTR MaLR 3 421 -7 206 316 0 70 chr4 64026428 64026542 -120262120 + MIR3 SINE MIR 99 204 -4 1517 157 128 26 chr4 64027513 64027825 -120260837 + MER7A DNA MER2_type 2 343 -3 541 311 185 9 chr4 64028846 64029068 -120259594 + MIR SINE MIR 2 262 0 731 275 66 20 chr4 64030527 64030771 -120257891 - MLT1J1 LTR MaLR 0 446 192 275 352 199 16 chr4 64031755 64032141 -120256521 - L3 LINE CR1 -219 1358 902 2112 171 23 21 chr4 64032327 64032714 -120255948 - MLT1B LTR MaLR -2 388 1 207 320 0 51 chr4 64032777 64032855 -120255807 + L2 LINE L2 3239 3312 -1 2181 231 81 15 chr4 64033128 64033724 -120254938 - LTR48B LTR ERV1 0 644 10 428 224 141 77 chr4 64033912 64034082 -120254580 - LTR48B-int LTR ERV1 -215 4721 4541 * 820 131 52 26 chr4 64034078 64034231 -120254431 - LTR48B-int LTR ERV1 -541 5790 5634 251 207 0 0 chr4 64034234 64034299 -120254363 + AluJo SINE Alu 84 125 -177 714 125 21 0 chr4 64034300 64034444 -120254218 + GA-rich Low_complexity Low_complexity 4 150 0 699 181 88 47 chr4 64034456 64034627 -120254035 + AluJo SINE Alu 131 308 -4 6517 151 93 71 chr4 64034639 64037184 -120251478 - LTR48B-int LTR ERV1 -692 6004 2948 3367 181 25 56 chr4 64037219 64037971 -120250691 - LTR48B-int LTR ERV1 -4231 2100 1372 506 203 47 23 chr4 64038065 64038193 -120250469 - LTR48B-int LTR ERV1 -4918 1413 1283 227 351 0 14 chr4 64038193 64038267 -120250395 - tRNA-Glu-GAG tRNA tRNA 0 75 3 1042 185 43 9 chr4 64038267 64038478 -120250184 - LTR48B-int LTR ERV1 -5122 1209 992 1200 155 15 168 chr4 64038631 64039043 -120249619 - LTR49 LTR ERV1 -246 349 1 2572 175 72 47 chr4 64039761 64040312 -120248350 - LTR48B-int LTR ERV1 -4465 1481 355 2010 171 47 17 chr4 64040344 64040761 -120247901 - LTR48B-int LTR ERV1 -4617 1329 1 2568 219 82 8 chr4 64040763 64041361 -120247301 - LTR48B LTR ERV1 0 644 3 189 0 0 0 chr4 64041455 64041476 -120247186 + (A)n Simple_repeat Simple_repeat 1 21 0 13139 98 8 6 chr4 64041933 64043811 -120244851 - MER57-int LTR ERV1 -1921 517 17 5205 119 55 47 chr4 64043811 64045240 -120243422 - pTR5 LTR ERV1 0 2606 1524 * 6948 120 29 27 chr4 64045238 64045971 -120242691 - MER57-int LTR ERV1 -1471 4475 3737 1748 183 3 0 chr4 64045971 64046282 -120242380 - AluSx SINE Alu 0 312 1 6948 120 29 27 chr4 64046282 64046721 -120241941 - MER57-int LTR ERV1 -2209 3737 3300 3516 161 90 16 chr4 64046709 64047372 -120241290 - MER57-int LTR ERV1 -3900 3637 2925 4138 135 82 143 chr4 64047372 64049107 -120239555 - pTR5 LTR ERV1 0 2438 17 239 161 18 0 chr4 64049116 64049172 -120239490 + G-rich Low_complexity Low_complexity 5 61 0 3470 275 107 14 chr4 64049205 64050605 -120238057 + L2 LINE L2 1758 3286 -27 4261 155 26 6 chr4 64050619 64051322 -120237340 + MER50 LTR ERV1 1 717 -17 216 97 0 0 chr4 64051322 64051353 -120237309 + (GGAA)n Simple_repeat Simple_repeat 1 31 0 30412 115 13 12 chr4 64052216 64056755 -120231907 - L1P LINE L1 -1594 4552 11 6829 119 72 53 chr4 64056913 64059108 -120229554 - HERV9 LTR ERV1 0 8399 31 680 100 326 13 chr4 64059113 64059343 -120229319 - HERV9 LTR ERV1 -5755 1141 840 * 20480 82 1 6 chr4 64059310 64062486 -120226176 - HERV9 LTR ERV1 -3425 4974 1816 1100 217 45 31 chr4 64062588 64062947 -120225715 + Charlie1b DNA MER1_type 160 523 0 383 68 17 0 chr4 64063124 64063183 -120225479 + (TG)n Simple_repeat Simple_repeat 1 60 0 979 202 30 22 chr4 64063223 64063490 -120225172 - MER45B DNA AcHobo 0 1040 772 238 319 32 0 chr4 64064442 64064536 -120224126 + HAL1b LINE L1 510 606 -742 402 220 10 0 chr4 64065103 64065203 -120223459 + MER110A LTR ERV1 70 170 -298 501 150 30 0 chr4 64065208 64065308 -120223354 - L1PA14 LINE L1 -128 6033 5931 912 109 0 0 chr4 64065308 64065444 -120223218 + L1PA13 LINE L1 6021 6158 -5 327 258 85 0 chr4 64065573 64065739 -120222923 + MER110A LTR ERV1 177 372 -96 307 365 0 14 chr4 64065913 64066061 -120222601 + L1M4 LINE L1 2405 2550 -3596 21 36 0 0 chr4 64066288 64066316 -120222346 + AT_rich Low_complexity Low_complexity 1 28 0 1443 197 131 8 chr4 64066639 64066990 -120221672 + MSTD LTR MaLR 1 394 -2 339 280 75 0 chr4 64066993 64067100 -120221562 - MIR SINE MIR -45 217 103 23 0 0 0 chr4 64067104 64067127 -120221535 + AT_rich Low_complexity Low_complexity 1 23 0 1558 209 43 14 chr4 64067356 64067701 -120220961 + MLT1A1 LTR MaLR 11 365 0 631 329 40 12 chr4 64070742 64070991 -120217671 + MIR SINE MIR 6 261 -1 203 186 0 23 chr4 64072114 64072157 -120216505 + (CATATA)n Simple_repeat Simple_repeat 4 45 0 490 278 31 5 chr4 64072158 64072349 -120216313 - ERVL LTR ERVL -382 5382 5187 13834 118 22 25 chr4 64072368 64072839 -120215823 - L1PA10 LINE L1 -11 6157 5686 2043 125 14 10 chr4 64072839 64073134 -120215528 - AluSx SINE Alu -16 296 1 13834 118 22 25 chr4 64073134 64075816 -120212846 - L1PA10 LINE L1 -482 5686 3014 2400 136 2 104 chr4 64075820 64076350 -120212312 + L1PA10 LINE L1 2523 2998 -3148 1186 173 115 103 chr4 64076455 64076948 -120211714 - MER66A LTR ERV1 0 478 97 416 281 50 14 chr4 64077038 64077177 -120211485 - ERVL LTR ERVL -702 5062 4919 508 326 65 49 chr4 64077269 64077413 -120211249 - ERVL LTR ERVL -2317 3447 3307 1827 204 7 32 chr4 64077413 64077820 -120210842 + MLT2C1 LTR ERVL 1 397 0 508 326 65 49 chr4 64077820 64078289 -120210373 - ERVL LTR ERVL -2457 3307 2824 549 213 262 30 chr4 64078295 64078558 -120210104 + MER5C DNA MER1_type 1 324 0 639 274 87 22 chr4 64078569 64079059 -120209603 - ERVL LTR ERVL -2885 2769 2228 439 319 55 44 chr4 64079284 64079648 -120209014 - ERVL LTR ERVL -3905 1859 1492 2009 150 27 55 chr4 64079710 64080111 -120208551 + MLT1B LTR MaLR 1 390 0 1213 224 46 56 chr4 64080526 64080919 -120207743 - MLT1B LTR MaLR -1 389 1 313 333 99 18 chr4 64081002 64081386 -120207276 - ERVL LTR ERVL -4586 1178 764 1428 233 82 14 chr4 64082749 64083186 -120205476 - MLT1C LTR MaLR 0 467 1 24 32 0 0 chr4 64083444 64083475 -120205187 + AT_rich Low_complexity Low_complexity 1 31 0 403 368 89 57 chr4 64083618 64084055 -120204607 - L2 LINE L2 -6 3266 2816 640 290 53 58 chr4 64084133 64084526 -120204136 + MLT1I LTR MaLR 19 409 0 244 361 31 15 chr4 64084545 64084675 -120203987 - L2 LINE L2 -576 2738 2607 878 235 34 81 chr4 64086129 64086600 -120202062 - MLT1A1 LTR MaLR 0 365 4 360 59 0 0 chr4 64086839 64086890 -120201772 + (TG)n Simple_repeat Simple_repeat 2 52 0 22 56 0 0 chr4 64087941 64087977 -120200685 + AT_rich Low_complexity Low_complexity 1 36 0 334 263 95 0 chr4 64088067 64088162 -120200500 - MIR SINE MIR -79 183 80 268 330 0 8 chr4 64088221 64088339 -120200323 + CT-rich Low_complexity Low_complexity 4 120 0 6712 68 8 0 chr4 64088349 64089885 -120198777 - L1PA6 LINE L1 -7 6147 4594 290 370 119 20 chr4 64090697 64091291 -120197371 - L2 LINE L2 -339 2975 2323 31 44 0 0 chr4 64091309 64091354 -120197308 + AT_rich Low_complexity Low_complexity 1 45 0 903 300 59 24 chr4 64091472 64091932 -120196730 - MLT1J LTR MaLR -35 476 1 21 36 0 0 chr4 64092208 64092236 -120196426 + AT_rich Low_complexity Low_complexity 1 28 0 930 223 100 57 chr4 64093116 64093466 -120195196 + MLT1A1 LTR MaLR 1 365 0 1864 231 39 7 chr4 64094113 64094577 -120194085 - MLT1D LTR MaLR -1 504 26 22989 31 2 0 chr4 64094684 64098235 -120190427 - L1PA4 LINE L1 -8 6147 2589 19489 64 3 5 chr4 64098334 64100955 -120187707 - L1PA4 LINE L1 -3528 2618 3 393 22 0 0 chr4 64101109 64101155 -120187507 + (TA)n Simple_repeat Simple_repeat 2 47 0 209 83 28 0 chr4 64101294 64101330 -120187332 + (TG)n Simple_repeat Simple_repeat 1 37 0 508 291 149 9 chr4 64101782 64101989 -120186673 + MIR SINE MIR 26 262 0 257 316 26 0 chr4 64102505 64102581 -120186081 + GA-rich Low_complexity Low_complexity 2 79 0 219 36 0 0 chr4 64102687 64102715 -120185947 + (CA)n Simple_repeat Simple_repeat 2 29 0 1977 91 39 49 chr4 64103053 64103360 -120185302 + AluY SINE Alu 1 304 -7 235 167 130 19 chr4 64103734 64103788 -120184874 - L2 LINE L2 0 3313 3254 823 169 23 0 chr4 64104524 64104654 -120184008 + AluSq/x SINE Alu 4 136 -177 2250 102 10 0 chr4 64104916 64105211 -120183451 - AluY SINE Alu -12 299 2 293 299 146 56 chr4 64105730 64106161 -120182501 + MLT1J LTR MaLR 1 470 -41 192 312 251 14 chr4 64106338 64106960 -120181702 + L2 LINE L2 1542 2310 -1004 5455 104 1 35 chr4 64107026 64107833 -120180829 + LTR17 LTR ERV1 1 780 0 694 240 45 11 chr4 64107958 64108137 -120180525 + MIR SINE MIR 77 261 -1 1692 135 11 23 chr4 64108343 64108609 -120180053 - AluSx SINE Alu -17 295 33 430 237 0 11 chr4 64109537 64109630 -120179032 + MIR SINE MIR 6 97 -165 7484 120 87 8 chr4 64109630 64111068 -120177594 + THE1C-int LTR MaLR 52 1580 0 1039 135 56 119 chr4 64111068 64111371 -120177291 + THE1C LTR MaLR 1 284 -91 212 152 22 43 chr4 64111556 64111602 -120177060 + CT-rich Low_complexity Low_complexity 3 47 0 3731 269 62 38 chr4 64112020 64112324 -120176338 - L2 LINE L2 -5 3308 3013 1474 203 31 3 chr4 64112324 64112649 -120176013 + MER58B DNA MER1_type 4 337 -4 3731 269 62 38 chr4 64112649 64113849 -120174813 - L2 LINE L2 -300 3013 1758 312 321 9 0 chr4 64114077 64114183 -120174479 + (TA)n Simple_repeat Simple_repeat 1 107 0 261 209 0 0 chr4 64114255 64114322 -120174340 + (TA)n Simple_repeat Simple_repeat 1 67 0 284 265 39 59 chr4 64114524 64114626 -120174036 - L2 LINE L2 -17 3296 3197 683 253 103 10 chr4 64114679 64114873 -120173789 + MER20 DNA MER1_type 8 219 0 562 210 17 45 chr4 64116144 64116320 -120172342 - MER39 LTR ERV1 -10 697 527 743 207 76 123 chr4 64116356 64116713 -120171949 - MER39-int LTR ERV1 -5239 1092 753 555 256 79 67 chr4 64116837 64117240 -120171422 - MER39-int LTR ERV1 -5883 448 41 1245 235 130 87 chr4 64117283 64117791 -120170871 - MER39 LTR ERV1 0 707 1 33 43 0 0 chr4 64118001 64118048 -120170614 + AT_rich Low_complexity Low_complexity 1 47 0 984 186 5 5 chr4 64118069 64118263 -120170399 + MER34C LTR ERV1 386 579 -6 362 297 31 0 chr4 64118319 64118447 -120170215 + MIR SINE MIR 121 252 -10 307 245 24 20 chr4 64118544 64118708 -120169954 + MER104 DNA Tc2 1 165 -15 2430 77 0 0 chr4 64119318 64119618 -120169044 - AluSg SINE Alu -10 300 1 2948 153 23 30 chr4 64119754 64120172 -120168490 - MER34B LTR ERV1 0 565 146 2115 123 43 103 chr4 64120172 64120239 -120168423 - MSTB2 LTR MaLR 0 457 388 2261 110 7 3 chr4 64120239 64120547 -120168115 + AluSx SINE Alu 1 309 -3 2115 123 43 103 chr4 64120547 64120560 -120168102 - MSTB2 LTR MaLR -69 388 376 744 94 0 0 chr4 64120560 64120666 -120167996 + (GGAA)n Simple_repeat Simple_repeat 4 109 0 2115 123 43 103 chr4 64120666 64121070 -120167592 - MSTB2 LTR MaLR -81 376 1 2948 153 23 30 chr4 64121070 64121219 -120167443 - MER34B LTR ERV1 -419 146 2 786 282 60 28 chr4 64121620 64121868 -120166794 + MIR SINE MIR 7 262 0 1398 333 81 16 chr4 64122405 64122785 -120165877 + MER115 DNA AcHobo 25 379 -314 2025 144 42 33 chr4 64122785 64123146 -120165516 - THE1B LTR MaLR 0 364 1 11855 93 6 1 chr4 64123146 64124719 -120163943 - THE1B-int LTR MaLR 0 1580 1 1847 159 36 44 chr4 64124719 64125084 -120163578 - THE1B LTR MaLR 0 364 3 1398 333 81 16 chr4 64125084 64125319 -120163343 + MER115 DNA AcHobo 378 682 -11 1739 201 35 30 chr4 64125376 64125770 -120162892 - MSTD LTR MaLR 0 396 1 228 274 16 0 chr4 64125809 64125871 -120162791 + L2 LINE L2 3184 3246 -67 935 235 93 24 chr4 64125873 64126162 -120162500 + MER58B DNA MER1_type 2 310 -31 203 323 31 0 chr4 64126187 64126252 -120162410 + L2 LINE L2 3234 3300 -13 186 103 0 0 chr4 64126252 64126281 -120162381 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 261 0 0 0 chr4 64126746 64126775 -120161887 + (TG)n Simple_repeat Simple_repeat 2 30 0 1364 249 74 7 chr4 64126797 64127214 -120161448 - MLT2B1 LTR ERVL -75 445 1 565 302 28 33 chr4 64128300 64128512 -120160150 + MIR SINE MIR 52 262 0 5119 225 40 11 chr4 64128748 64129258 -120159404 - L1M4b LINE L1 -767 6190 5696 2333 62 0 62 chr4 64129258 64129579 -120159083 + AluY SINE Alu 1 301 -10 5119 225 40 11 chr4 64129579 64129803 -120158859 - L1M4b LINE L1 -1261 5696 5480 216 0 0 0 chr4 64129803 64129827 -120158835 + (CAA)n Simple_repeat Simple_repeat 1 24 0 5119 225 40 11 chr4 64129827 64130556 -120158106 - L1M4b LINE L1 -1477 5480 4683 627 217 8 0 chr4 64130591 64130711 -120157951 + FLAM_A SINE Alu 1 121 -12 3289 205 50 33 chr4 64130742 64131522 -120157140 + MER21B LTR ERV1 13 805 -58 826 230 61 67 chr4 64131601 64131944 -120156718 - L1M4b LINE L1 -2282 4675 4335 * 841 245 49 92 chr4 64131941 64132217 -120156445 - L1M4b LINE L1 -3704 3265 2979 856 154 0 0 chr4 64132217 64132347 -120156315 + FLAM_C SINE Alu 2 131 -2 841 245 49 92 chr4 64132347 64132956 -120155706 - L1M4b LINE L1 -3990 2979 2476 2003 196 92 19 chr4 64133099 64133220 -120155442 - L1M4b LINE L1 -4833 2022 1911 255 79 0 0 chr4 64133220 64133258 -120155404 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2074 114 0 0 chr4 64133262 64133535 -120155127 - AluSg SINE Alu -37 273 1 2003 196 92 19 chr4 64133535 64134170 -120154492 - L1M4b LINE L1 -4946 1909 1206 2201 166 24 15 chr4 64134420 64134830 -120153832 - MLT2D LTR ERVL 0 414 1 1357 267 191 52 chr4 64135112 64135924 -120152738 - L1M4b LINE L1 -5924 935 11 353 313 35 28 chr4 64135943 64136087 -120152575 + L2 LINE L2 2909 3053 -219 427 246 177 31 chr4 64137086 64137216 -120151446 + L2 LINE L2 3165 3313 0 506 294 128 10 chr4 64137955 64138159 -120150503 + MIR SINE MIR 20 247 -15 322 366 16 0 chr4 64138424 64138547 -120150115 + L2 LINE L2 3188 3312 -1 977 275 45 43 chr4 64138558 64138794 -120149868 - MLT1J2 LTR MaLR 0 450 211 2131 134 0 28 chr4 64138794 64139115 -120149547 + AluSx SINE Alu 1 312 0 977 275 45 43 chr4 64139115 64139321 -120149341 - MLT1J2 LTR MaLR -239 211 7 367 261 23 39 chr4 64140795 64140925 -120147737 - MLT1K LTR MaLR -66 522 395 24 0 0 0 chr4 64140925 64140949 -120147713 + AT_rich Low_complexity Low_complexity 1 24 0 658 80 0 20 chr4 64140954 64141054 -120147608 - L1PA8 LINE L1 -4 6168 6071 768 230 6 22 chr4 64141357 64141535 -120147127 - MIR SINE MIR -4 258 84 1153 296 37 75 chr4 64141873 64142570 -120146092 + L2 LINE L2 2084 2754 -560 262 304 0 0 chr4 64143142 64143233 -120145429 + L1ME3A LINE L1 5516 5606 -558 1815 213 116 21 chr4 64143383 64143424 -120145238 - MLT2B1 LTR ERVL 0 520 484 498 17 0 0 chr4 64143424 64143483 -120145179 + (TG)n Simple_repeat Simple_repeat 2 60 0 1815 213 116 21 chr4 64143483 64143916 -120144746 - MLT2B1 LTR ERVL -36 484 1 272 233 35 12 chr4 64144077 64144163 -120144499 + MLT1I LTR MaLR 322 409 0 465 262 71 28 chr4 64144183 64144435 -120144227 + L1ME3A LINE L1 5683 5945 -225 214 200 0 0 chr4 64144520 64144560 -120144102 + (TAA)n Simple_repeat Simple_repeat 1 40 0 219 69 0 0 chr4 64144759 64144788 -120143874 + (GTTTG)n Simple_repeat Simple_repeat 2 30 0 451 328 61 8 chr4 64145071 64145318 -120143344 + L2 LINE L2 2148 2407 -907 303 375 42 35 chr4 64145684 64145828 -120142834 + L2 LINE L2 3128 3272 0 235 354 69 7 chr4 64146892 64147036 -120141626 - MIR SINE MIR -107 155 3 3923 242 32 20 chr4 64147926 64147951 -120140711 + L1MCb LINE L1 3 26 -6313 1858 148 43 38 chr4 64147951 64148324 -120140338 + THE1C LTR MaLR 1 375 0 3923 242 32 20 chr4 64148324 64149764 -120138898 + L1MCb LINE L1 26 1488 -4851 1202 159 24 48 chr4 64149803 64150054 -120138608 - MSTB1 LTR MaLR -176 256 12 727 180 68 6 chr4 64150058 64150219 -120138443 - MSTB1-int LTR MaLR 0 1651 1481 906 154 126 12 chr4 64150241 64150487 -120138175 + L1MCb LINE L1 1482 1755 -4809 960 235 41 43 chr4 64150548 64150974 -120137688 - L1ME1 LINE L1 -1 6165 5735 * 8362 178 27 25 chr4 64150971 64152179 -120136483 + L1PBb LINE L1 461 1666 -4537 5780 111 42 49 chr4 64152179 64154402 -120134260 + SVA Other Other 12 1386 0 8362 178 27 25 chr4 64154402 64156009 -120132653 + L1PBb LINE L1 1666 3270 -2933 2561 93 60 21 chr4 64156009 64156440 -120132222 - LTR7 LTR ERV1 -2 448 1 8362 178 27 25 chr4 64156440 64157232 -120131430 + L1PBb LINE L1 3270 4145 -2058 2329 72 0 0 chr4 64157232 64157525 -120131137 - AluY SINE Alu -17 294 2 8362 178 27 25 chr4 64157525 64157601 -120131061 + L1PBb LINE L1 4145 4219 -1984 186 133 0 0 chr4 64157618 64157648 -120131014 + (AGGGGG)n Simple_repeat Simple_repeat 5 34 0 190 111 89 0 chr4 64158005 64158050 -120130612 + GA-rich Low_complexity Low_complexity 3 51 0 454 250 14 0 chr4 64158050 64158190 -120130472 + L1 LINE L1 4208 4349 -1854 180 0 0 0 chr4 64158647 64158667 -120129995 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2916 35 0 0 chr4 64158667 64159013 -120129649 - L1PA4 LINE L1 -8 6147 5802 799 228 6 0 chr4 64159026 64159197 -120129465 + MIR SINE MIR 49 220 -42 2277 122 3 0 chr4 64159767 64160078 -120128584 + AluSp SINE Alu 1 312 -1 28 71 0 0 chr4 64160147 64160203 -120128459 + AT_rich Low_complexity Low_complexity 1 56 0 470 102 0 11 chr4 64160239 64160327 -120128335 + (TA)n Simple_repeat Simple_repeat 2 88 0 431 296 99 0 chr4 64160327 64160469 -120128193 - MIR SINE MIR -68 194 39 2132 172 3 24 chr4 64160553 64160926 -120127736 - MLT1A1 LTR MaLR 0 365 1 187 268 18 36 chr4 64161208 64161264 -120127398 - L2 LINE L2 -9 3263 3209 215 152 22 0 chr4 64161472 64161518 -120127144 + (TA)n Simple_repeat Simple_repeat 2 48 0 188 294 103 24 chr4 64162114 64162240 -120126422 - MIR SINE MIR 0 262 127 1131 230 125 25 chr4 64162317 64162756 -120125906 + MER34 LTR ERV1 60 542 0 230 240 20 0 chr4 64162848 64162898 -120125764 - L2 LINE L2 -18 3295 3245 1116 164 5 0 chr4 64163046 64163241 -120125421 - MER46A DNA MER2_type 0 236 41 563 223 86 53 chr4 64163305 64163726 -120124936 + LTR48B LTR ERV1 142 626 -18 229 245 0 0 chr4 64164295 64164344 -120124318 + GA-rich Low_complexity Low_complexity 4 52 0 198 264 230 23 chr4 64164595 64164682 -120123980 + L2 LINE L2 3168 3272 0 433 121 0 60 chr4 64166343 64166426 -120122236 + MADE1 DNA Mariner 1 78 -2 369 275 22 21 chr4 64166427 64166542 -120122120 + MIR SINE MIR 40 160 -60 514 208 141 26 chr4 64166657 64166849 -120121813 + MER39 LTR ERV1 295 508 -199 242 143 0 54 chr4 64167522 64167578 -120121084 + (TCTCTG)n Simple_repeat Simple_repeat 4 56 0 915 262 138 37 chr4 64167942 64168434 -120120228 + MER34 LTR ERV1 1 542 0 457 328 57 10 chr4 64168564 64168756 -120119906 + MIR SINE MIR 8 208 -54 1343 182 246 60 chr4 64170286 64170737 -120117925 - MLT1H LTR MaLR -2 547 13 1293 141 5 0 chr4 64170764 64173352 -120115310 - ALR/Alpha Satellite centromeric -1 2599 1 334 373 16 22 chr4 64173856 64174041 -120114621 + MIR3 SINE MIR 2 185 -23 198 0 0 0 chr4 64174042 64174064 -120114598 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 3213 102 0 15 chr4 64174654 64175123 -120113539 + L1PB1 LINE L1 5676 6137 -14 219 88 0 0 chr4 64175126 64175160 -120113502 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 270 232 88 48 chr4 64175221 64175346 -120113316 - L2 LINE L2 -185 3128 2999 1589 261 25 14 chr4 64175359 64175796 -120112866 - MER70B LTR ERVL -135 443 2 277 309 12 12 chr4 64175842 64175926 -120112736 - L2 LINE L2 -385 2928 2845 2193 65 3 62 chr4 64176754 64177076 -120111586 + AluY SINE Alu 1 303 -8 11749 113 9 41 chr4 64177295 64180172 -120108490 - L1P3 LINE L1 -3606 2855 8 943 148 0 0 chr4 64180180 64180315 -120108347 - AluJb SINE Alu -177 135 1 3228 200 56 10 chr4 64180315 64181115 -120107547 - Charlie1 DNA MER1_type -214 2547 1711 3496 191 32 48 chr4 64181119 64182648 -120106014 - L1MB8 LINE L1 0 6178 4664 1901 175 0 0 chr4 64182648 64182945 -120105717 - AluSx SINE Alu -15 297 1 3496 191 32 48 chr4 64182945 64183056 -120105606 - L1MB8 LINE L1 -1514 4664 4553 1826 229 38 22 chr4 64183057 64183500 -120105162 + MLT2B3 LTR ERVL 1 450 -104 1022 127 12 12 chr4 64183500 64183673 -120104989 + THE1C LTR MaLR 1 173 -202 1048 46 1 6 chr4 64183673 64183804 -120104858 - L1M4 LINE L1 -339 5816 5691 442 43 0 43 chr4 64183804 64183860 -120104802 + L1PA4 LINE L1 6087 6152 -3 1048 46 1 6 chr4 64183860 64183876 -120104786 - L1M4 LINE L1 -464 5691 5676 971 141 7 29 chr4 64183880 64184072 -120104590 + THE1C LTR MaLR 199 375 0 538 168 28 9 chr4 64184072 64184133 -120104529 + MLT2B3 LTR ERVL 446 511 -43 476 59 15 0 chr4 64184133 64184201 -120104461 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 538 168 28 9 chr4 64184201 64184246 -120104416 + MLT2B3 LTR ERVL 511 554 0 259 204 0 0 chr4 64184251 64184300 -120104362 - L1MB8 LINE L1 -1595 4551 4503 1776 242 20 4 chr4 64184300 64184787 -120103875 - L1MB8 LINE L1 -1605 4541 4047 448 178 37 98 chr4 64185061 64185141 -120103521 - Charlie1 DNA MER1_type -17 2744 2661 5784 48 0 1 chr4 64185141 64185848 -120102814 - L1PA5 LINE L1 -7 6147 5442 448 178 37 98 chr4 64185848 64185981 -120102681 - Charlie1 DNA MER1_type -100 2661 2544 1143 186 0 0 chr4 64185998 64186191 -120102471 - AluJb SINE Alu 0 312 120 21285 91 7 15 chr4 64186207 64188745 -120099917 - L1PA7 LINE L1 -3 6151 3668 2354 92 3 16 chr4 64188745 64189060 -120099602 - AluY SINE Alu 0 311 1 21285 91 7 15 chr4 64189060 64190691 -120097971 - L1PA7 LINE L1 -2486 3668 2025 33 56 0 0 chr4 64191493 64191547 -120097115 + AT_rich Low_complexity Low_complexity 1 54 0 190 331 81 70 chr4 64191618 64191706 -120096956 - MIR SINE MIR 0 262 177 2179 135 120 5 chr4 64191706 64192090 -120096572 + MSTA LTR MaLR 1 428 0 190 331 81 70 chr4 64192090 64192173 -120096489 - MIR SINE MIR -85 177 89 3638 170 28 25 chr4 64192290 64193039 -120095623 - L1MB4 LINE L1 -2 6178 5428 1854 179 70 42 chr4 64194093 64194496 -120094166 - MLT2D LTR ERVL 0 414 1 428 250 15 22 chr4 64194647 64194783 -120093879 + L1MEc LINE L1 37 171 -6225 637 206 15 0 chr4 64194969 64195100 -120093562 + L1MEc LINE L1 530 662 -5734 259 333 34 8 chr4 64195130 64195247 -120093415 + L2 LINE L2 3163 3282 -31 21 0 0 0 chr4 64195468 64195489 -120093173 + AT_rich Low_complexity Low_complexity 1 21 0 1742 43 0 51 chr4 64195680 64195915 -120092747 - AluY SINE Alu 0 311 89 190 288 12 25 chr4 64196716 64196796 -120091866 + L2 LINE L2 1131 1209 -2105 481 325 101 48 chr4 64196872 64196972 -120091690 + L2 LINE L2 2302 2395 -919 2330 71 6 22 chr4 64196972 64197283 -120091379 - AluY SINE Alu -5 306 1 481 325 101 48 chr4 64197283 64197560 -120091102 + L2 LINE L2 2395 2699 -615 665 161 57 8 chr4 64197738 64197862 -120090800 + MLT2B2 LTR ERVL 47 176 -339 297 0 0 0 chr4 64197919 64197952 -120090710 + (A)n Simple_repeat Simple_repeat 1 33 0 847 197 52 28 chr4 64198503 64198716 -120089946 + Charlie1 DNA MER1_type 1500 1717 -1044 2320 229 15 5 chr4 64198716 64199322 -120089340 + L1M4 LINE L1 3356 3967 -2179 2230 92 3 3 chr4 64199427 64199721 -120088941 + AluSx SINE Alu 1 294 -18 1178 221 104 22 chr4 64200117 64200537 -120088125 - MLT1C LTR MaLR -2 465 6 287 300 31 54 chr4 64200557 64200687 -120087975 + MIR3 SINE MIR 30 156 -52 2695 30 0 0 chr4 64200774 64201078 -120087584 + AluY SINE Alu 1 304 -7 23 0 0 0 chr4 64201254 64201277 -120087385 + AT_rich Low_complexity Low_complexity 1 23 0 1648 188 22 80 chr4 64201394 64201507 -120087155 + MLT1B LTR MaLR 1 119 -271 2251 104 3 0 chr4 64201507 64201806 -120086856 + AluSq SINE Alu 1 300 -13 1648 188 22 80 chr4 64201806 64202106 -120086556 + MLT1B LTR MaLR 119 390 0 1251 98 0 0 chr4 64202541 64202704 -120085958 - U1 snRNA snRNA -2 163 1 365 284 61 34 chr4 64202951 64203099 -120085563 + MER5A DNA MER1_type 38 189 0 1929 163 45 27 chr4 64203395 64203931 -120084731 + MLT2A2 LTR ERVL 8 554 0 385 348 38 14 chr4 64203983 64204193 -120084469 - L2 LINE L2 -912 2402 2188 436 255 126 64 chr4 64204530 64205313 -120083349 - HAL1 LINE L1 -798 1709 878 597 187 60 27 chr4 64205831 64205981 -120082681 - L1MC2 LINE L1 -11 6333 6179 206 146 24 0 chr4 64206046 64206087 -120082575 + L2 LINE L2 3272 3313 0 2140 115 32 64 chr4 64206523 64206722 -120081940 + THE1B LTR MaLR 1 184 -180 2297 105 0 7 chr4 64206722 64207026 -120081636 - AluSx SINE Alu -4 308 7 2140 115 32 64 chr4 64207026 64207201 -120081461 + THE1B LTR MaLR 184 363 -1 376 164 0 0 chr4 64207538 64207611 -120081051 + LTR30 LTR ERV1 552 624 -98 324 0 0 0 chr4 64207615 64207651 -120081011 + (A)n Simple_repeat Simple_repeat 1 36 0 260 260 0 0 chr4 64207653 64207726 -120080936 + LTR30 LTR ERV1 552 624 -98 3353 189 50 47 chr4 64208278 64209162 -120079500 + L1MC3 LINE L1 6398 7310 -685 195 42 0 0 chr4 64209162 64209186 -120079476 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 3353 189 50 47 chr4 64209186 64209554 -120079108 + L1MC3 LINE L1 7310 7675 -320 780 128 0 0 chr4 64209581 64209690 -120078972 - FLAM_C SINE Alu -32 111 3 1542 191 0 61 chr4 64210308 64210562 -120078100 + AluJo SINE Alu 1 232 -80 3593 142 42 18 chr4 64210562 64211182 -120077480 + MER41B LTR ERV1 1 635 0 1542 191 0 61 chr4 64211182 64211257 -120077405 + AluJo SINE Alu 232 310 -2 642 227 52 0 chr4 64211261 64211415 -120077247 + L1MCb LINE L1 583 744 -5301 941 220 36 5 chr4 64211541 64211764 -120076898 + L1M4 LINE L1 4061 4290 -1856 1484 223 128 47 chr4 64211771 64212197 -120076465 + MLT2B1 LTR ERVL 9 399 -121 207 0 0 0 chr4 64212197 64212220 -120076442 + (TC)n Simple_repeat Simple_repeat 2 24 0 324 0 0 0 chr4 64212224 64212260 -120076402 + (CA)n Simple_repeat Simple_repeat 2 37 0 1484 223 128 47 chr4 64212260 64212295 -120076367 + MLT2B1 LTR ERVL 401 513 -7 915 219 50 20 chr4 64212300 64212602 -120076060 + L1M4 LINE L1 4288 4598 -1548 * 937 164 113 0 chr4 64212594 64212789 -120075873 + L1MC2 LINE L1 6128 6344 0 6407 206 112 74 chr4 64212802 64214207 -120074455 + L1MD2 LINE L1 25 1569 -4971 1826 88 6 137 chr4 64214207 64214550 -120074112 + AluSg1 SINE Alu 2 299 -10 6407 206 112 74 chr4 64214550 64215626 -120073036 + L1MD2 LINE L1 1569 2602 -3938 588 259 0 0 chr4 64215644 64215760 -120072902 + FLAM_C SINE Alu 3 118 -25 657 209 44 19 chr4 64215783 64215989 -120072673 + L1MD2 LINE L1 2595 2805 -3735 2580 241 42 23 chr4 64216085 64217079 -120071583 + L1MD2 LINE L1 2777 3768 -2772 1168 221 133 56 chr4 64217078 64217479 -120071183 + L1MD2 LINE L1 4275 4718 -1822 * 593 238 129 0 chr4 64217479 64217626 -120071036 + FAM SINE Alu 1 166 -9 1168 221 133 56 chr4 64217626 64217691 -120070971 + L1MD2 LINE L1 4718 4777 -1763 * 2084 193 59 2 chr4 64217690 64218116 -120070546 + L1MC1 LINE L1 5879 6328 -5 281 244 23 47 chr4 64218118 64218204 -120070458 + MER58 DNA MER1_type 129 2417 -3 1175 209 90 24 chr4 64218467 64218878 -120069784 + L1MD2 LINE L1 4764 5201 -1339 2887 248 33 13 chr4 64218882 64219944 -120068718 + L1PBa LINE L1 1 699 -5505 2077 121 0 4 chr4 64219944 64220225 -120068437 + AluSg SINE Alu 1 280 -30 2887 248 33 13 chr4 64220225 64220518 -120068144 + L1PBa LINE L1 699 985 -5219 579 149 101 47 chr4 64220558 64220706 -120067956 + L1PA16 LINE L1 6001 6156 -10 2054 125 3 30 chr4 64220712 64221048 -120067614 + L1PB3 LINE L1 5825 6151 -3 1732 226 53 18 chr4 64221150 64221853 -120066809 + L1MD2 LINE L1 5193 5918 -718 2832 165 138 35 chr4 64221854 64222485 -120066177 - MER44D DNA MER2_type 0 705 10 1128 189 251 5 chr4 64222503 64222932 -120065730 + L1MD2 LINE L1 5921 6539 -214 249 246 0 31 chr4 64223202 64223216 -120065446 - L1PBb LINE L1 -6024 180 167 2100 122 7 0 chr4 64223216 64223512 -120065150 - AluSg SINE Alu -10 300 3 249 246 0 31 chr4 64223512 64223562 -120065100 - L1MEc LINE L1 -6037 167 118 330 380 106 8 chr4 64223563 64223800 -120064862 + L1MEc LINE L1 138 397 -5987 504 208 247 0 chr4 64223803 64223957 -120064705 + MER3 DNA MER1_type 12 203 -6 2234 121 0 3 chr4 64224160 64224474 -120064188 + AluSq SINE Alu 1 313 0 236 288 68 49 chr4 64224892 64225055 -120063607 + L1MEc LINE L1 283 448 -5653 636 226 59 18 chr4 64225214 64225474 -120063188 + L1MEc LINE L1 577 861 -5240 1302 209 40 15 chr4 64225810 64226083 -120062579 + MLT1C LTR MaLR 188 467 0 22 35 0 0 chr4 64226116 64226145 -120062517 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 64226360 64226381 -120062281 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr4 64226432 64226457 -120062205 + (CATATA)n Simple_repeat Simple_repeat 6 30 0 868 83 0 15 chr4 64226969 64227102 -120061560 - FLAM_C SINE Alu -2 131 1 501 206 27 98 chr4 64227278 64227422 -120061240 + L2 LINE L2 3143 3273 -40 1757 174 27 0 chr4 64227422 64227716 -120060946 - AluJo SINE Alu -10 302 1 501 206 27 98 chr4 64227716 64227755 -120060907 + L2 LINE L2 3273 3313 0 2167 109 0 3 chr4 64227943 64228236 -120060426 - AluY SINE Alu -19 292 1 350 172 17 0 chr4 64228293 64228351 -120060311 + AluS SINE Alu 1 59 -241 2376 168 7 32 chr4 64228451 64228826 -120059836 + Tigger2a DNA MER2_type 4 368 -2340 1992 147 134 8 chr4 64228826 64229206 -120059456 - MSTA LTR MaLR 0 428 1 2376 168 7 32 chr4 64229206 64229271 -120059391 + Tigger2a DNA MER2_type 368 433 -1 22 70 0 0 chr4 64229537 64229580 -120059082 + AT_rich Low_complexity Low_complexity 1 43 0 832 235 101 131 chr4 64229730 64230296 -120058366 + MLT1H LTR MaLR 1 549 0 669 313 138 0 chr4 64230369 64230593 -120058069 - MIR SINE MIR -3 259 5 190 93 23 23 chr4 64230627 64230670 -120057992 + (TA)n Simple_repeat Simple_repeat 2 44 0 725 214 125 6 chr4 64231150 64231318 -120057344 + MLT1D LTR MaLR 1 188 -317 1081 211 31 12 chr4 64231421 64231677 -120056985 + L1MC3 LINE L1 5565 5825 -1960 7025 163 28 52 chr4 64231679 64233174 -120055488 + L1MCa LINE L1 20 1479 -4947 689 207 0 41 chr4 64233174 64233226 -120055436 + 5S rRNA rRNA 2 55 -66 9394 52 22 30 chr4 64233226 64235228 -120053434 + L1PA6 LINE L1 4143 6152 -2 689 207 0 41 chr4 64235228 64235296 -120053366 + 5S rRNA rRNA 55 117 -4 212 0 36 0 chr4 64235296 64235324 -120053338 + (CAA)n Simple_repeat Simple_repeat 1 29 0 888 137 66 93 chr4 64235331 64235557 -120053105 + L1MCa LINE L1 1450 1669 -4757 2842 134 138 95 chr4 64235576 64236320 -120052342 + L1MA4A LINE L1 5505 6280 -23 3756 218 51 38 chr4 64236347 64236514 -120052148 + L1MCa LINE L1 2304 2467 -3959 2085 91 40 0 chr4 64236514 64236788 -120051874 + AluSg SINE Alu 21 305 -5 3756 218 51 38 chr4 64236788 64237976 -120050686 + L1MCa LINE L1 2467 3714 -2712 3710 222 162 8 chr4 64237999 64238547 -120050115 + L1PA16 LINE L1 3728 4190 -1956 258 32 0 0 chr4 64238547 64238578 -120050084 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 3710 222 162 8 chr4 64238578 64239171 -120049491 + L1PA16 LINE L1 4190 5045 -1101 258 156 0 0 chr4 64239254 64239299 -120049363 + (CCG)n Simple_repeat Simple_repeat 1 45 0 5148 124 54 14 chr4 64240491 64241591 -120047071 + L1PA16 LINE L1 5023 6157 -9 607 250 17 17 chr4 64241601 64241773 -120046889 + L1MCa LINE L1 4279 4450 -1976 304 240 135 0 chr4 64241771 64241867 -120046795 + L1MC1 LINE L1 606 714 -5331 * 321 256 12 12 chr4 64241878 64241964 -120046698 + L1MC1 LINE L1 678 763 -5282 * 2730 239 24 14 chr4 64241959 64242753 -120045909 + L1MC1 LINE L1 4397 5198 -1366 267 157 20 0 chr4 64242755 64242806 -120045856 + L1MC1 LINE L1 5315 5366 -1198 4624 153 28 1 chr4 64242824 64243601 -120045061 + L1MC1 LINE L1 5945 6742 -9 2263 186 42 68 chr4 64243612 64244214 -120044448 + L1MC3 LINE L1 5817 6402 -1383 4809 124 35 27 chr4 64244215 64244506 -120044156 - Tigger3(Golem) DNA MER2_type -1 3027 2740 1986 91 65 4 chr4 64244506 64244781 -120043881 + AluSq SINE Alu 1 292 -21 4809 124 35 27 chr4 64244781 64245328 -120043334 - Tigger3(Golem) DNA MER2_type -288 2740 2183 779 173 0 15 chr4 64245330 64245463 -120043199 - FLAM_C SINE Alu -2 131 1 1528 176 158 15 chr4 64245478 64245813 -120042849 + MSTA LTR MaLR 46 428 0 3614 156 74 0 chr4 64245813 64246449 -120042213 - MSTA-int LTR MaLR -968 683 1 695 161 108 0 chr4 64246449 64246579 -120042083 - MSTA LTR MaLR 0 428 285 849 106 0 0 chr4 64246679 64246792 -120041870 + AluSg/x SINE Alu 183 295 -15 2026 247 63 53 chr4 64247126 64247683 -120040979 + MLT1E2 LTR MaLR 1 566 -60 2163 70 42 11 chr4 64247683 64247968 -120040694 - AluY SINE Alu -17 294 1 2026 247 63 53 chr4 64247968 64247998 -120040664 + MLT1E2 LTR MaLR 566 594 -32 1247 205 0 0 chr4 64247998 64248213 -120040449 + Tigger3b DNA MER2_type 1 215 -1016 15152 111 100 10 chr4 64248213 64250709 -120037953 + L1PB1 LINE L1 1 2721 -4142 342 0 0 0 chr4 64250709 64250747 -120037915 + (CA)n Simple_repeat Simple_repeat 2 39 0 11420 188 52 17 chr4 64250748 64252117 -120036545 + L1PB1 LINE L1 2799 4120 -2747 2177 135 3 0 chr4 64252117 64252429 -120036233 + AluSq SINE Alu 1 313 0 11420 188 52 17 chr4 64252429 64254928 -120033734 + L1PB1 LINE L1 4120 6811 -56 2554 105 16 5 chr4 64254939 64255310 -120033352 + THE1C LTR MaLR 1 375 0 830 129 45 0 chr4 64255311 64255443 -120033219 + AluSg/x SINE Alu 157 294 -18 326 133 17 0 chr4 64255443 64255503 -120033159 + L1PB1 LINE L1 6806 6866 -1 4761 137 107 12 chr4 64255504 64256424 -120032238 + Tigger3b DNA MER2_type 199 1205 -26 1537 171 100 13 chr4 64256461 64256771 -120031891 + MER1B DNA MER1_type 1 337 0 2367 70 0 0 chr4 64256893 64257177 -120031485 + AluY SINE Alu 3 286 -25 687 178 0 22 chr4 64257516 64257651 -120031011 + MLT1A1 LTR MaLR 21 152 -213 285 91 0 23 chr4 64257658 64257702 -120030960 + MLT1A1 LTR MaLR 323 365 0 673 242 68 32 chr4 64257792 64258044 -120030618 - MIR SINE MIR 0 262 2 2257 198 103 101 chr4 64258339 64258621 -120030041 - L1MC5 LINE L1 -164 7797 7517 876 184 55 51 chr4 64258621 64258838 -120029824 + MER20 DNA MER1_type 2 219 0 2257 198 103 101 chr4 64258838 64259397 -120029265 - L1MC5 LINE L1 -444 7517 6950 180 0 0 0 chr4 64259397 64259417 -120029245 + (TAG)n Simple_repeat Simple_repeat 3 22 0 2257 198 103 101 chr4 64259417 64259648 -120029014 - L1MC5 LINE L1 -1011 6950 6721 198 255 43 53 chr4 64260286 64260380 -120028282 + MIR SINE MIR 166 258 -4 242 246 33 0 chr4 64260533 64260594 -120028068 - L1ME LINE L1 -458 5663 5601 27 0 0 0 chr4 64261239 64261266 -120027396 + AT_rich Low_complexity Low_complexity 1 27 0 291 54 0 0 chr4 64261274 64261311 -120027351 + (CA)n Simple_repeat Simple_repeat 2 38 0 487 133 89 0 chr4 64261575 64261665 -120026997 - L1MA4 LINE L1 -7 6293 6196 216 287 83 28 chr4 64261669 64261777 -120026885 + MIR3 SINE MIR 86 199 -9 862 232 17 59 chr4 64262318 64262555 -120026107 + MIR SINE MIR 15 241 -21 486 79 0 0 chr4 64262921 64262997 -120025665 + (TA)n Simple_repeat Simple_repeat 1 76 0 952 152 0 7 chr4 64263269 64263420 -120025242 - AluJb SINE Alu -28 284 135 320 58 0 19 chr4 64263510 64263562 -120025100 + (TA)n Simple_repeat Simple_repeat 2 52 0 * 432 0 0 0 chr4 64263561 64263609 -120025053 + (GA)n Simple_repeat Simple_repeat 2 49 0 22 70 0 0 chr4 64264740 64264783 -120023879 + AT_rich Low_complexity Low_complexity 1 43 0 788 170 7 0 chr4 64265445 64265580 -120023082 + FLAM_C SINE Alu 1 136 -7 278 229 16 0 chr4 64265861 64265922 -120022740 + MIR SINE MIR 177 238 -24 1512 86 0 0 chr4 64267503 64267700 -120020962 - MER107 DNA MER1_type 0 197 1 853 285 65 75 chr4 64268002 64268521 -120020141 + MLT1F1 LTR MaLR 48 561 -6 715 216 115 18 chr4 64268736 64268954 -120019708 + L1MB8 LINE L1 5931 6169 -9 221 0 35 0 chr4 64268960 64268989 -120019673 + (CCCCCA)n Simple_repeat Simple_repeat 1 30 0 376 147 0 0 chr4 64269096 64269161 -120019501 + L1MC4 LINE L1 6413 6522 -1311 2304 100 0 10 chr4 64269181 64269492 -120019170 + AluSg SINE Alu 1 308 -2 652 171 18 0 chr4 64269494 64269605 -120019057 - Tigger1 DNA MER2_type 0 2418 2306 1365 196 19 0 chr4 64269605 64269870 -120018792 - AluJb SINE Alu -1 311 42 693 154 0 44 chr4 64269971 64270107 -120018555 + AluSg/x SINE Alu 182 311 -1 7915 120 53 6 chr4 64270112 64272129 -120016533 - Tigger1 DNA MER2_type -218 2200 1 2698 227 136 83 chr4 64272136 64272864 -120015798 + L1MC4 LINE L1 6636 7324 -718 1986 142 0 0 chr4 64272864 64273172 -120015490 + AluSx SINE Alu 1 308 0 2698 227 136 83 chr4 64273172 64273777 -120014885 + L1MC4 LINE L1 7324 8040 -2 422 292 169 23 chr4 64274109 64274500 -120014162 + L1M4 LINE L1 2143 2590 -3556 2030 278 44 26 chr4 64274515 64275427 -120013235 + L2 LINE L2 2332 3265 -48 263 312 25 13 chr4 64275797 64275901 -120012761 - MIR SINE MIR -64 144 79 180 0 0 0 chr4 64275928 64275948 -120012714 + (A)n Simple_repeat Simple_repeat 1 20 0 192 270 63 32 chr4 64275950 64276013 -120012649 - MIR SINE MIR -176 86 22 233 252 163 0 chr4 64276013 64276136 -120012526 + L1M4 LINE L1 2863 3005 -3141 2206 106 0 7 chr4 64276377 64276679 -120011983 + AluSg SINE Alu 1 300 -10 367 180 50 20 chr4 64276680 64276780 -120011882 - L1MC5 LINE L1 -54 7907 7805 1621 145 75 42 chr4 64277268 64277600 -120011062 + MER2 DNA MER2_type 2 344 0 24 0 0 0 chr4 64277763 64277787 -120010875 + AT_rich Low_complexity Low_complexity 1 24 0 2031 227 67 45 chr4 64278039 64278594 -120010068 + MLT1F1 LTR MaLR 1 567 0 1262 218 138 0 chr4 64279293 64279692 -120008970 + L1M4 LINE L1 3325 3778 -2368 299 253 74 0 chr4 64279855 64279950 -120008712 + MIR SINE MIR 160 261 -1 344 109 0 0 chr4 64280026 64280081 -120008581 + L1MB2 LINE L1 6101 6155 -16 1582 172 4 7 chr4 64280104 64280377 -120008285 + AluJo SINE Alu 36 307 -5 342 242 158 30 chr4 64280405 64280570 -120008092 - MIR SINE MIR -64 198 13 396 59 0 0 chr4 64281036 64281087 -120007575 + (CA)n Simple_repeat Simple_repeat 2 52 0 207 275 72 0 chr4 64281264 64281333 -120007329 + L2 LINE L2 2154 2227 -1087 503 368 78 14 chr4 64281356 64281704 -120006958 + L2 LINE L2 2368 2737 -577 772 261 28 11 chr4 64281879 64282059 -120006603 + MER5A DNA MER1_type 1 183 -6 205 281 178 7 chr4 64282068 64282214 -120006448 + L2 LINE L2 2911 3081 -191 692 239 42 0 chr4 64282329 64282496 -120006166 + MER96 DNA MER1_type 1 174 -1 220 318 12 35 chr4 64282597 64282682 -120005980 + MIR3 SINE MIR 94 176 -32 197 256 357 16 chr4 64282931 64283060 -120005602 - MIR SINE MIR -62 200 28 2606 199 62 0 chr4 64283303 64283832 -120004830 + MER68 LTR ERV1 1 562 0 343 209 67 90 chr4 64283952 64284086 -120004576 + L2 LINE L2 3168 3298 -15 1399 229 77 53 chr4 64284764 64285179 -120003483 + MLT1D LTR MaLR 81 505 0 183 222 0 0 chr4 64285246 64285282 -120003380 + L2 LINE L2 3222 3257 -15 22 56 0 0 chr4 64285587 64285623 -120003039 + AT_rich Low_complexity Low_complexity 1 36 0 25 0 0 0 chr4 64285735 64285760 -120002902 + AT_rich Low_complexity Low_complexity 1 25 0 215 255 43 75 chr4 64286716 64286810 -120001852 - MIR3 SINE MIR -10 198 108 30 45 0 0 chr4 64286858 64286902 -120001760 + AT_rich Low_complexity Low_complexity 1 44 0 192 329 79 0 chr4 64286902 64286978 -120001684 + MIR3 SINE MIR 110 191 -17 2363 97 0 0 chr4 64287014 64287313 -120001349 + AluSx SINE Alu 1 299 -13 415 134 62 0 chr4 64287445 64287521 -120001141 + MLT1E2 LTR MaLR 443 607 -19 2164 127 0 0 chr4 64288999 64289291 -119999371 - AluSx SINE Alu -19 293 2 22 56 0 0 chr4 64289529 64289565 -119999097 + AT_rich Low_complexity Low_complexity 1 36 0 291 270 26 9 chr4 64291222 64291337 -119997325 + (TA)n Simple_repeat Simple_repeat 1 117 0 583 234 105 29 chr4 64291401 64291610 -119997052 + L1MDa LINE L1 53 277 -6263 1192 235 41 51 chr4 64292093 64292234 -119996428 + L1MDa LINE L1 843 984 -5559 2124 119 0 0 chr4 64292234 64292561 -119996101 + AluSx SINE Alu 1 327 0 1192 235 41 51 chr4 64292561 64292886 -119995776 + L1MDa LINE L1 984 1305 -5238 25 0 0 0 chr4 64292921 64292946 -119995716 + AT_rich Low_complexity Low_complexity 1 25 0 2437 163 190 32 chr4 64292967 64293613 -119995049 + L1MB2 LINE L1 5422 6169 -2 513 235 99 76 chr4 64293751 64294162 -119994500 - MLT1G LTR MaLR 0 590 102 3386 179 46 43 chr4 64294162 64294222 -119994440 + L1MC3 LINE L1 6239 6297 -1488 2160 132 0 0 chr4 64294222 64294518 -119994144 + AluSq SINE Alu 1 296 -17 3386 179 46 43 chr4 64294518 64294534 -119994128 + L1MC3 LINE L1 6297 6311 -1474 1911 136 10 7 chr4 64294534 64294829 -119993833 + AluSx SINE Alu 1 296 -16 3386 179 46 43 chr4 64294829 64295512 -119993150 + L1MC3 LINE L1 6311 7001 -784 1163 232 83 58 chr4 64295513 64295751 -119992911 + L1M4 LINE L1 3084 3315 -2831 8844 99 7 13 chr4 64295751 64297855 -119990807 + L1PA8 LINE L1 4060 6171 -1 1163 232 83 58 chr4 64297855 64298294 -119990368 + L1M4 LINE L1 3315 3778 -2368 923 245 84 15 chr4 64298311 64298703 -119989959 + L1M4 LINE L1 2639 3057 -3089 * 995 239 78 24 chr4 64298699 64298998 -119989664 + L1M4 LINE L1 3782 4106 -2040 1604 208 7 3 chr4 64298998 64299301 -119989361 - AluJo SINE Alu -6 306 3 995 239 78 24 chr4 64299301 64299373 -119989289 + L1M4 LINE L1 4106 4173 -1973 251 243 124 34 chr4 64299428 64299605 -119989057 + L1M4 LINE L1 4060 4252 -1894 4451 175 22 27 chr4 64299831 64300815 -119987847 - L1MB4 LINE L1 -25 6155 5176 216 0 0 0 chr4 64300818 64300842 -119987820 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2038 117 0 3 chr4 64300845 64301128 -119987534 - AluSx SINE Alu -30 282 1 309 326 109 47 chr4 64301245 64301631 -119987031 + L1M4 LINE L1 4639 5048 -1098 21 0 0 0 chr4 64302689 64302710 -119985952 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 64302758 64302781 -119985881 + AT_rich Low_complexity Low_complexity 1 23 0 1405 229 56 111 chr4 64302876 64303354 -119985308 + MER68 LTR ERV1 3 443 -119 7119 57 0 1 chr4 64303354 64304404 -119984258 + L1PA5 LINE L1 5098 6146 -8 1405 229 56 111 chr4 64304404 64304518 -119984144 + MER68 LTR ERV1 443 562 0 2515 109 3 0 chr4 64304582 64304932 -119983730 + THE1A LTR MaLR 5 355 0 307 251 171 53 chr4 64304999 64305186 -119983476 + HAL1 LINE L1 37 245 -2262 1763 164 24 3 chr4 64305258 64305545 -119983117 + AluJo SINE Alu 1 293 -19 2034 123 35 0 chr4 64305636 64305920 -119982742 + AluSq SINE Alu 1 294 -19 779 291 122 32 chr4 64305937 64306411 -119982251 + HAL1 LINE L1 417 933 -1574 1438 229 139 88 chr4 64306453 64307516 -119981146 + HAL1 LINE L1 1389 2506 -1 379 264 174 36 chr4 64307668 64307944 -119980718 + L1M4 LINE L1 3331 3644 -2502 367 261 72 49 chr4 64308207 64308405 -119980257 + L1M4 LINE L1 3060 3252 -2894 535 174 29 80 chr4 64308405 64308543 -119980119 + FLAM_A SINE Alu 3 133 0 367 261 72 49 chr4 64308543 64308735 -119979927 + L1M4 LINE L1 3252 3459 -2687 787 173 8 0 chr4 64308875 64309002 -119979660 + AluJo SINE Alu 1 128 -174 1991 137 0 0 chr4 64309011 64309295 -119979367 + AluSx SINE Alu 1 284 -28 728 213 18 35 chr4 64309316 64309511 -119979151 + AluJo SINE Alu 118 309 0 250 286 29 19 chr4 64309547 64309652 -119979010 + L1M4 LINE L1 3543 3648 -2498 516 208 81 0 chr4 64309664 64309837 -119978825 - L1M4 LINE L1 -3086 3060 2874 1266 254 179 10 chr4 64309873 64310377 -119978285 + L1MEc LINE L1 62 650 -5746 421 226 161 21 chr4 64310507 64310693 -119977969 + L1M4 LINE L1 3652 3863 -2283 1912 164 0 3 chr4 64311887 64312192 -119976470 + AluSx SINE Alu 1 304 -8 22 56 0 0 chr4 64312630 64312666 -119975996 + AT_rich Low_complexity Low_complexity 1 36 0 2356 209 33 33 chr4 64313006 64313609 -119975053 - L1MD2 LINE L1 -19 6340 5738 871 219 47 19 chr4 64313643 64313858 -119974804 - MER58A DNA MER1_type -3 221 1 253 354 21 31 chr4 64313948 64314044 -119974618 - L3b LINE CR1 -6 1577 1483 294 355 2 10 chr4 64314145 64314252 -119974410 - MIR3 SINE MIR -52 156 48 491 86 12 0 chr4 64316487 64316568 -119972094 + Alu SINE Alu 220 301 -9 269 313 78 16 chr4 64317661 64317789 -119970873 + MIR3 SINE MIR 70 205 -3 26 0 0 0 chr4 64317798 64317824 -119970838 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr4 64317942 64317968 -119970694 + AT_rich Low_complexity Low_complexity 1 26 0 369 288 179 11 chr4 64317997 64318181 -119970481 + MIR SINE MIR 33 247 -15 572 264 181 5 chr4 64318284 64318500 -119970162 - MIR SINE MIR -1 261 8 1178 198 177 60 chr4 64319292 64319637 -119969025 + L1ME1 LINE L1 5733 6129 -37 1762 158 7 24 chr4 64319637 64319935 -119968727 - AluJb SINE Alu -19 293 1 1178 198 177 60 chr4 64319935 64319973 -119968689 + L1ME1 LINE L1 6129 6161 -5 335 298 108 36 chr4 64320014 64320403 -119968259 + L1MC4 LINE L1 7617 8033 -9 1317 156 19 27 chr4 64321238 64321364 -119967298 - Tigger6 DNA MER2_type 0 1597 1472 2252 92 7 10 chr4 64321364 64321499 -119967163 + AluSx SINE Alu 1 135 -177 2414 67 0 10 chr4 64321499 64321811 -119966851 + AluY SINE Alu 1 309 -2 2252 92 7 10 chr4 64321811 64321979 -119966683 + AluSx SINE Alu 135 303 -9 1317 156 19 27 chr4 64321979 64322115 -119966547 - Tigger6 DNA MER2_type -125 1472 1337 481 157 114 93 chr4 64322161 64322301 -119966361 - Tigger6 DNA MER2_type -249 1348 1206 378 0 0 0 chr4 64322423 64322465 -119966197 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 1156 159 14 43 chr4 64322590 64322798 -119965864 + AluJo SINE Alu 1 202 -110 226 237 17 0 chr4 64322800 64322859 -119965803 + FAM SINE Alu 116 175 -4 264 257 82 82 chr4 64322958 64322995 -119965667 - LTR67 LTR ERVL -1 556 520 2205 85 0 20 chr4 64322995 64323300 -119965362 + AluSx SINE Alu 1 299 -13 264 257 82 82 chr4 64323300 64323445 -119965217 - LTR67 LTR ERVL -36 521 374 4184 58 45 0 chr4 64323586 64324141 -119964521 - LTR19B LTR ERV1 0 580 1 830 187 14 0 chr4 64324171 64324310 -119964352 + AluSx SINE Alu 3 143 -169 1215 107 0 0 chr4 64324568 64324737 -119963925 + AluSx SINE Alu 144 312 0 637 198 0 9 chr4 64324963 64325079 -119963583 + FLAM_A SINE Alu 1 115 -18 521 240 0 0 chr4 64325355 64325459 -119963203 + AluSx SINE Alu 40 143 -169 1215 107 0 0 chr4 64325717 64325886 -119962776 + AluSx SINE Alu 144 312 0 714 164 0 9 chr4 64326112 64326228 -119962434 + FLAM_A SINE Alu 1 115 -18 207 0 0 0 chr4 64326241 64326264 -119962398 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1878 145 0 7 chr4 64327026 64327341 -119961321 + AluSx SINE Alu 3 315 0 199 370 31 25 chr4 64328224 64328386 -119960276 - L2 LINE L2 -214 3058 2896 207 405 0 0 chr4 64328605 64328684 -119959978 - L2 LINE L2 -642 2672 2594 * 399 265 10 20 chr4 64328679 64328781 -119959881 - MIR3 SINE MIR -46 162 62 1954 165 50 13 chr4 64330224 64330453 -119958209 - MSTD LTR MaLR 0 396 146 1831 176 0 3 chr4 64330453 64330754 -119957908 + AluJo SINE Alu 1 300 -12 1954 165 50 13 chr4 64330754 64330906 -119957756 - MSTD LTR MaLR -250 146 1 267 103 0 0 chr4 64330950 64330989 -119957673 + (A)n Simple_repeat Simple_repeat 1 39 0 288 53 0 0 chr4 64331414 64331452 -119957210 + (TG)n Simple_repeat Simple_repeat 2 39 0 369 227 62 39 chr4 64333019 64333147 -119955515 + MIR SINE MIR 63 193 -69 265 320 117 0 chr4 64333156 64333259 -119955403 - L2 LINE L2 0 3313 3199 312 48 0 0 chr4 64333409 64333451 -119955211 + (TG)n Simple_repeat Simple_repeat 1 42 0 1573 169 19 0 chr4 64333451 64333712 -119954950 - AluJb SINE Alu -33 279 14 236 296 28 0 chr4 64333766 64333837 -119954825 + MIR SINE MIR 142 214 -48 185 397 134 6 chr4 64334374 64334553 -119954109 + L3b LINE CR1 1302 1503 -80 2299 91 7 0 chr4 64334568 64334907 -119953755 + AluSc SINE Alu 1 341 0 1052 110 13 7 chr4 64334978 64335132 -119953530 + AluSg/x SINE Alu 142 296 -16 2273 78 0 23 chr4 64335260 64335567 -119953095 + AluY SINE Alu 1 300 -11 404 188 73 10 chr4 64335657 64335753 -119952909 - Charlie7 DNA MER1_type -2509 103 2 189 314 248 0 chr4 64335905 64336010 -119952652 + MIR3 SINE MIR 14 144 -64 1880 135 11 0 chr4 64336205 64336479 -119952183 + AluJo SINE Alu 6 282 -30 23 0 0 0 chr4 64336766 64336789 -119951873 + AT_rich Low_complexity Low_complexity 1 23 0 205 262 0 0 chr4 64337375 64337417 -119951245 - L3 LINE CR1 -4 1573 1532 1790 103 12 24 chr4 64337441 64337713 -119950949 + AluSx SINE Alu 35 303 0 451 273 47 0 chr4 64338631 64338759 -119949903 - L1MB7 LINE L1 -68 6116 5983 2261 106 3 0 chr4 64338767 64339078 -119949584 - AluSx SINE Alu 0 312 1 1840 159 3 16 chr4 64339518 64339826 -119948836 + AluSx SINE Alu 1 304 -8 272 254 0 0 chr4 64340327 64340390 -119948272 + MLT1H LTR MaLR 57 119 -430 486 257 174 58 chr4 64340428 64340825 -119947837 + MLT1H LTR MaLR 107 549 0 415 290 0 8 chr4 64341556 64341680 -119946982 - MIR SINE MIR 0 262 140 7003 125 35 26 chr4 64341797 64342577 -119946085 - Tigger3b DNA MER2_type -1797 1231 435 1904 141 3 3 chr4 64342577 64342860 -119945802 - AluSx SINE Alu -29 283 1 7003 125 35 26 chr4 64342860 64343299 -119945363 - Tigger3b DNA MER2_type -2593 435 1 1025 155 25 0 chr4 64343353 64343514 -119945148 + FRAM SINE Alu 8 172 -4 405 131 36 0 chr4 64343518 64343602 -119945060 + GA-rich Low_complexity Low_complexity 2 88 0 614 182 0 91 chr4 64343614 64343757 -119944905 + FLAM_A SINE Alu 1 130 -3 447 287 8 0 chr4 64344895 64345017 -119943645 + MIR SINE MIR 2 124 -138 377 283 53 27 chr4 64345019 64345206 -119943456 - LTR33 LTR ERVL -2 519 328 662 277 64 0 chr4 64345279 64345467 -119943195 - LTR33 LTR ERVL -321 200 1 431 267 8 25 chr4 64345468 64345588 -119943074 + MIR SINE MIR 126 243 -19 * 454 316 107 0 chr4 64345587 64345774 -119942888 - MIR SINE MIR -50 212 6 738 272 149 40 chr4 64345901 64346224 -119942438 + L3 LINE CR1 1194 1551 -26 276 111 222 0 chr4 64346449 64346521 -119942141 - L1MA8 LINE L1 -3 6288 6201 1002 189 91 39 chr4 64346895 64347460 -119941202 + MER63 DNA MER1_type 1 656 -405 640 250 102 5 chr4 64347460 64347656 -119941006 + MER58C DNA MER1_type 1 215 0 * 2107 170 27 8 chr4 64347656 64348054 -119940608 + MER63 DNA MER1_type 653 1058 -2 378 290 23 46 chr4 64348839 64348970 -119939692 + MIR SINE MIR 11 138 -124 658 294 32 64 chr4 64348972 64349285 -119939377 + L2 LINE L2 3011 3313 0 342 291 39 0 chr4 64349309 64349412 -119939250 + MIR SINE MIR 148 254 -8 1231 148 69 5 chr4 64349412 64349614 -119939048 - AluJb SINE Alu -87 225 11 438 267 39 63 chr4 64350128 64350334 -119938328 - L2 LINE L2 -9 3304 3104 2214 129 3 0 chr4 64350470 64350779 -119937883 - AluSx SINE Alu -2 310 1 21 36 0 0 chr4 64350788 64350816 -119937846 + AT_rich Low_complexity Low_complexity 1 28 0 2121 96 0 77 chr4 64351661 64351984 -119936678 - AluSx SINE Alu -14 298 1 472 258 13 129 chr4 64352138 64352269 -119936393 + MIR SINE MIR 14 159 -103 2482 143 57 2 chr4 64352269 64352675 -119935987 - MSTA LTR MaLR 0 428 1 472 258 13 129 chr4 64352675 64352704 -119935958 + MIR SINE MIR 159 144 -118 1987 121 29 0 chr4 64352704 64352984 -119935678 - AluSx SINE Alu -20 292 5 472 258 13 129 chr4 64352984 64353047 -119935615 + MIR SINE MIR 143 212 -50 247 268 49 0 chr4 64355074 64355133 -119933529 - L1ME4a LINE L1 -74 6047 5981 1910 155 13 0 chr4 64355133 64355437 -119933225 - AluJb SINE Alu -2 310 3 247 268 49 0 chr4 64355437 64355459 -119933203 - L1ME4a LINE L1 -140 5981 5962 2159 129 29 6 chr4 64355532 64355873 -119932789 + MER47A DNA MER2_type 18 366 0 2322 99 0 0 chr4 64356648 64356951 -119931711 + AluY SINE Alu 1 303 -8 1198 226 60 126 chr4 64357073 64357759 -119930903 - L2 LINE L2 0 3313 2673 26 0 0 0 chr4 64358056 64358082 -119930580 + AT_rich Low_complexity Low_complexity 1 26 0 2282 114 0 0 chr4 64359008 64359314 -119929348 + AluSg SINE Alu 1 306 -4 2468 82 0 9 chr4 64360539 64360855 -119927807 - AluSp SINE Alu 0 313 1 225 0 0 0 chr4 64360871 64360896 -119927766 + (A)n Simple_repeat Simple_repeat 1 25 0 254 95 24 0 chr4 64361173 64361215 -119927447 + (ATG)n Simple_repeat Simple_repeat 1 43 0 2445 63 0 0 chr4 64361238 64361540 -119927122 - AluY SINE Alu -9 302 1 422 203 154 16 chr4 64361754 64361877 -119926785 - MIR SINE MIR -13 249 110 1679 165 10 10 chr4 64362641 64362932 -119925730 - AluJo SINE Alu -17 295 5 180 0 0 0 chr4 64363577 64363597 -119925065 + (T)n Simple_repeat Simple_repeat 1 20 0 284 281 56 0 chr4 64364250 64364339 -119924323 - MIR SINE MIR -48 214 121 1013 151 24 6 chr4 64364958 64365124 -119923538 - FAM SINE Alu -6 169 1 1836 163 3 7 chr4 64365526 64365815 -119922847 - AluJo SINE Alu -24 288 1 207 0 0 0 chr4 64366220 64366243 -119922419 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 438 213 185 9 chr4 64366752 64366860 -119921802 - MER45A DNA AcHobo -50 128 2 642 292 117 64 chr4 64367175 64367517 -119921145 - L3 LINE CR1 -3 1574 1215 1461 204 91 14 chr4 64367613 64368105 -119920557 - L1M LINE L1 -743 5403 4880 982 186 125 68 chr4 64368108 64368387 -119920275 + AluJo SINE Alu 11 305 -7 1050 244 129 16 chr4 64368390 64368886 -119919776 - L1M4 LINE L1 -1255 4891 4340 1985 133 58 22 chr4 64368886 64369248 -119919414 + THE1C LTR MaLR 1 375 0 9807 125 20 34 chr4 64369250 64370849 -119917813 + THE1C-int LTR MaLR 4 1580 0 930 141 97 16 chr4 64370849 64371034 -119917628 + THE1C LTR MaLR 1 200 -164 3125 119 11 2 chr4 64371038 64371738 -119916924 - L1M1 LINE L1 -577 7147 6442 21490 159 35 13 chr4 64371751 64372461 -119916201 - L1M1 LINE L1 -2199 5366 4673 2393 103 0 0 chr4 64372461 64372773 -119915889 - AluSx SINE Alu 0 312 1 21490 159 35 13 chr4 64372773 64377301 -119911361 - L1M1 LINE L1 -2892 4673 12 819 232 63 112 chr4 64377300 64377727 -119910935 - L1MDb LINE L1 -5229 854 449 * 366 312 71 18 chr4 64377788 64377958 -119910704 - L1MDb LINE L1 -5622 448 270 221 340 57 50 chr4 64379842 64379983 -119908679 + MER5A DNA MER1_type 46 187 -2 827 203 41 35 chr4 64380021 64380218 -119908444 + MLT1B LTR MaLR 193 390 0 267 220 17 161 chr4 64380256 64380374 -119908288 + MER5A DNA MER1_type 86 186 -3 364 287 86 47 chr4 64381199 64381238 -119907424 + L1MEc LINE L1 1011 1047 -5349 207 0 0 0 chr4 64381238 64381261 -119907401 + (CCA)n Simple_repeat Simple_repeat 3 25 0 364 287 86 47 chr4 64381261 64381632 -119907030 + L1MEc LINE L1 1047 1402 -4994 2244 98 3 0 chr4 64381632 64381927 -119906735 - AluSp SINE Alu -17 296 1 364 287 86 47 chr4 64381927 64382207 -119906455 + L1MEc LINE L1 1402 1754 -4642 1350 223 127 3 chr4 64382207 64382530 -119906132 - MLT1A1 LTR MaLR 0 365 3 364 287 86 47 chr4 64382530 64382597 -119906065 + L1MEc LINE L1 1754 1817 -4579 544 207 175 83 chr4 64382719 64383087 -119905575 - MLT1G3 LTR MaLR 0 590 141 374 167 0 0 chr4 64383117 64383177 -119905485 - MLT1G3 LTR MaLR -533 62 3 573 269 169 27 chr4 64383449 64383709 -119904953 - LTR50 LTR ERVL -496 299 3 1113 245 75 106 chr4 64383837 64383942 -119904720 + L1MEc LINE L1 2179 2286 -3929 541 206 48 16 chr4 64383942 64384068 -119904594 + FLAM_A SINE Alu 1 130 -3 1113 245 75 106 chr4 64384068 64385110 -119903552 + L1MEc LINE L1 2286 3290 -2925 2204 118 7 0 chr4 64385157 64385462 -119903200 + AluSg SINE Alu 1 307 -3 251 243 0 27 chr4 64385566 64385640 -119903022 + L1ME3A LINE L1 16 87 -6032 405 348 94 11 chr4 64385944 64386279 -119902383 + L1ME3A LINE L1 499 888 -5287 313 349 53 8 chr4 64386354 64386486 -119902176 + L1ME3A LINE L1 4637 4774 -1355 5310 62 34 24 chr4 64386516 64387274 -119901388 + MER4E LTR ERV1 1 766 0 650 286 159 18 chr4 64387379 64387909 -119900753 + L1ME3A LINE L1 4947 5401 -746 1931 171 102 20 chr4 64387909 64388301 -119900361 + MSTB LTR MaLR 3 426 0 650 286 159 18 chr4 64388301 64388625 -119900037 + L1ME3A LINE L1 5401 5929 -218 279 266 57 94 chr4 64388687 64388879 -119899783 + L1ME3A LINE L1 5945 6129 -24 21 36 0 0 chr4 64389647 64389675 -119898987 + AT_rich Low_complexity Low_complexity 1 28 0 1596 126 0 0 chr4 64392231 64392453 -119896209 + AluSx SINE Alu 7 228 -84 183 361 130 12 chr4 64392641 64392810 -119895852 + L2 LINE L2 2549 2737 -577 403 300 94 22 chr4 64393295 64393475 -119895187 - L2 LINE L2 -307 3006 2814 191 311 0 0 chr4 64393472 64393517 -119895145 + L2 LINE L2 3137 3181 -91 * 244 276 200 52 chr4 64393549 64393759 -119894903 - MIR SINE MIR -7 255 15 185 317 0 0 chr4 64393781 64393822 -119894840 + L2 LINE L2 3264 3304 -9 854 266 90 84 chr4 64394193 64394352 -119894310 - L2 LINE L2 0 3313 3156 2228 89 3 10 chr4 64394352 64394656 -119894006 + AluSx SINE Alu 1 302 -10 854 266 90 84 chr4 64394656 64395041 -119893621 - L2 LINE L2 -157 3156 2765 552 246 125 99 chr4 64395039 64395352 -119893310 + L2 LINE L2 2992 3312 -1 * 410 311 27 8 chr4 64396358 64396604 -119892058 - L1MC/D LINE L1 -2044 5764 5456 21 0 0 0 chr4 64397299 64397320 -119891342 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 64397615 64397645 -119891017 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr4 64398214 64398242 -119890420 + AT_rich Low_complexity Low_complexity 1 28 0 323 253 0 32 chr4 64399477 64399572 -119889090 + L2 LINE L2 3149 3240 -73 797 317 57 40 chr4 64400711 64401115 -119887547 + L2 LINE L2 1001 1411 -1903 427 267 187 40 chr4 64401133 64401459 -119887203 + L2 LINE L2 2818 3191 -122 282 271 0 42 chr4 64401507 64401603 -119887059 + L2 LINE L2 3149 3240 -73 218 273 52 39 chr4 64401812 64401889 -119886773 + L2 LINE L2 3234 3311 -2 738 174 0 30 chr4 64403912 64404044 -119884618 + FLAM_A SINE Alu 1 128 -5 27 0 0 0 chr4 64404914 64404941 -119883721 + AT_rich Low_complexity Low_complexity 1 27 0 502 211 16 87 chr4 64405262 64405447 -119883215 + L1MC5 LINE L1 7754 7925 -36 221 287 193 33 chr4 64405468 64405618 -119883044 - L2 LINE L2 -1366 1948 1775 559 209 27 0 chr4 64405671 64405781 -119882881 + FLAM_A SINE Alu 4 116 -17 566 222 62 14 chr4 64405894 64406038 -119882624 - MIR SINE MIR 0 262 112 22 56 0 0 chr4 64408236 64408272 -119880390 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr4 64408908 64408936 -119879726 + AT_rich Low_complexity Low_complexity 1 28 0 225 312 65 11 chr4 64409067 64409160 -119879502 - L2 LINE L2 -2 3270 3173 6446 76 27 76 chr4 64409321 64410886 -119877776 + SVA Other Other 4 1366 -991 6446 81 29 91 chr4 64409713 64410886 -119877776 + SVA Other Other 272 1381 -5 334 0 0 0 chr4 64410886 64410923 -119877739 + (TAAA)n Simple_repeat Simple_repeat 4 64 0 211 387 24 30 chr4 64411611 64411779 -119876883 - L2 LINE L2 -424 2890 2724 21 36 0 0 chr4 64412284 64412312 -119876350 + AT_rich Low_complexity Low_complexity 1 28 0 1515 142 75 51 chr4 64412588 64412919 -119875743 - MER44D DNA MER2_type 0 609 1 638 186 0 62 chr4 64413423 64413568 -119875094 - AluJo SINE Alu -176 136 1 699 247 43 5 chr4 64414634 64414820 -119873842 + MER58A DNA MER1_type 29 221 -3 301 309 167 25 chr4 64415476 64415680 -119872982 - HAL1 LINE L1 -799 1708 1476 270 303 41 21 chr4 64415688 64415833 -119872829 - L1MEd LINE L1 -4865 1254 1107 22 0 0 0 chr4 64415925 64415947 -119872715 + AT_rich Low_complexity Low_complexity 1 22 0 706 23 0 0 chr4 64416081 64416167 -119872495 + L1PA3 LINE L1 6067 6152 -3 347 240 48 10 chr4 64416740 64416844 -119871818 + MER103 DNA DNA 52 159 -7 257 212 101 71 chr4 64417361 64417460 -119871202 - MIR SINE MIR -72 190 89 2174 115 7 0 chr4 64418273 64418569 -119870093 + AluSg SINE Alu 1 298 -12 432 237 0 31 chr4 64418703 64418800 -119869862 - MER58B DNA MER1_type 0 341 248 38 0 0 0 chr4 64419867 64419905 -119868757 + AT_rich Low_complexity Low_complexity 1 38 0 1746 125 96 7 chr4 64420117 64420398 -119868264 - AluSx SINE Alu -4 308 3 2312 75 0 7 chr4 64420730 64421024 -119867638 - AluSc SINE Alu -14 295 4 2232 107 0 10 chr4 64421141 64421449 -119867213 + AluSg SINE Alu 1 305 -5 505 351 27 22 chr4 64423176 64423361 -119865301 - MIR SINE MIR -73 189 4 286 338 25 20 chr4 64424296 64424494 -119864168 + HAL1b LINE L1 249 447 -901 351 275 50 0 chr4 64424502 64424622 -119864040 + HAL1b LINE L1 483 608 -740 1262 224 73 62 chr4 64424630 64425508 -119863154 + L1ME1 LINE L1 4725 5609 -557 36912 102 16 17 chr4 64425514 64431652 -119857010 + L1PA13 LINE L1 11 6160 -3 897 216 100 12 chr4 64431644 64431903 -119856759 + L1ME1 LINE L1 5812 6093 -73 * 233 257 0 0 chr4 64432009 64432083 -119856579 - Tigger8 DNA MER2_type -130 536 463 989 158 50 27 chr4 64432229 64432450 -119856212 + THE1C LTR MaLR 1 226 -149 9467 126 28 31 chr4 64432664 64434249 -119854413 + THE1C-int LTR MaLR 1 1580 0 1522 136 122 35 chr4 64434249 64434594 -119854068 + THE1C LTR MaLR 1 375 0 485 332 70 16 chr4 64434595 64434851 -119853811 - Tigger8 DNA MER2_type -388 278 9 481 262 119 24 chr4 64434926 64435094 -119853568 - MIR SINE MIR -26 236 53 1967 122 20 0 chr4 64435449 64435743 -119852919 - AluSx SINE Alu -8 304 5 534 286 63 11 chr4 64436223 64436398 -119852264 - MIR SINE MIR -8 254 71 23 0 0 0 chr4 64437191 64437214 -119851448 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 64437413 64437436 -119851226 + AT_rich Low_complexity Low_complexity 1 23 0 31 0 0 0 chr4 64437706 64437737 -119850925 + AT_rich Low_complexity Low_complexity 1 31 0 198 91 0 0 chr4 64438398 64438431 -119850231 + (T)n Simple_repeat Simple_repeat 1 33 0 393 284 146 74 chr4 64438480 64439022 -119849640 + L1M4 LINE L1 4651 5231 -915 920 183 43 6 chr4 64439027 64439191 -119849471 + FAM SINE Alu 2 171 -4 186 104 60 30 chr4 64439323 64439390 -119849272 + (TA)n Simple_repeat Simple_repeat 1 69 0 1735 180 3 0 chr4 64439594 64439889 -119848773 + AluJo SINE Alu 17 312 0 23 54 0 0 chr4 64440171 64440208 -119848454 + AT_rich Low_complexity Low_complexity 1 37 0 346 292 10 10 chr4 64440653 64440749 -119847913 + L2 LINE L2 1169 1264 -2050 24 0 0 0 chr4 64442872 64442896 -119845766 + AT_rich Low_complexity Low_complexity 1 24 0 1725 166 20 3 chr4 64442932 64443228 -119845434 - AluSx SINE Alu -11 301 1 554 265 9 100 chr4 64444882 64445112 -119843550 + L2 LINE L2 2445 2653 -661 579 159 58 51 chr4 64445124 64445262 -119843400 - Charlie1 DNA MER1_type 0 2761 2623 * 926 204 75 13 chr4 64445246 64445472 -119843190 - Charlie1 DNA MER1_type -2519 242 3 1103 301 55 56 chr4 64445475 64446111 -119842551 + L2 LINE L2 2662 3308 -5 1817 105 4 15 chr4 64446157 64446424 -119842238 + AluSx SINE Alu 43 306 -6 1422 229 89 25 chr4 64447236 64447672 -119840990 + LTR40c LTR ERVL 1 464 -1 978 241 67 9 chr4 64447683 64447835 -119840827 - L1MEd LINE L1 -4890 1229 1087 1942 99 3 27 chr4 64447835 64448127 -119840535 - AluSx SINE Alu 0 312 28 978 241 67 9 chr4 64448127 64448290 -119840372 - L1MEd LINE L1 -5032 1087 896 2350 84 0 0 chr4 64448500 64448798 -119839864 - AluSg SINE Alu -12 298 1 416 256 95 15 chr4 64448821 64448958 -119839704 - MIR SINE MIR -108 154 7 180 365 77 10 chr4 64449022 64449126 -119839536 - L2 LINE L2 -1016 2298 2188 928 106 0 0 chr4 64449154 64449286 -119839376 - L1PA13 LINE L1 -216 5947 5816 487 130 54 0 chr4 64449286 64449378 -119839284 + L1PA13 LINE L1 6067 6163 0 214 307 53 0 chr4 64449442 64449517 -119839145 - L2 LINE L2 -1238 2076 1998 1740 183 27 15 chr4 64450151 64450484 -119838178 - MSTD LTR MaLR -59 337 1 503 169 270 7 chr4 64450484 64450632 -119838030 - MSTD-int LTR MaLR -1 1734 1548 409 280 84 21 chr4 64450632 64450775 -119837887 - L2 LINE L2 -471 2843 2692 719 235 4 77 chr4 64450776 64451023 -119837639 + HAL1 LINE L1 2256 2484 -23 801 246 130 9 chr4 64451023 64451238 -119837424 + MIR SINE MIR 5 245 -17 313 317 59 11 chr4 64451283 64451469 -119837193 + L1M4 LINE L1 2514 2708 -3438 323 274 95 0 chr4 64451788 64451872 -119836790 - MER68 LTR ERV1 -448 114 23 1750 160 3 20 chr4 64451969 64452269 -119836393 - AluJb SINE Alu -17 295 1 328 275 48 34 chr4 64452269 64452369 -119836293 + L1ME4a LINE L1 5555 5652 -518 1826 74 0 0 chr4 64452369 64452599 -119836063 + MER30 DNA MER1_type 1 230 0 328 275 48 34 chr4 64452599 64452793 -119835869 + L1ME4a LINE L1 5652 5948 -222 23 0 0 0 chr4 64453080 64453103 -119835559 + AT_rich Low_complexity Low_complexity 1 23 0 732 226 172 40 chr4 64453493 64453780 -119834882 - MER102a DNA MER1_type -8 322 7 558 200 67 50 chr4 64454015 64454195 -119834467 - L1MC5 LINE L1 -594 7367 7185 366 223 102 24 chr4 64454188 64454354 -119834308 + L1ME4a LINE L1 5922 6100 -21 * 699 218 65 42 chr4 64454636 64454897 -119833765 - L1MC5 LINE L1 -58 7903 7637 1411 199 131 116 chr4 64454897 64455431 -119833231 - MLT1E LTR MaLR 0 593 1 1404 196 67 81 chr4 64455432 64456198 -119832464 - L1MC5 LINE L1 -321 7640 6828 1666 242 97 13 chr4 64456858 64457395 -119831267 - L1MC5 LINE L1 -1855 5953 5372 232 323 10 0 chr4 64457389 64457488 -119831174 - L1MC5 LINE L1 -1963 4183 4084 * 23 33 0 0 chr4 64457651 64457681 -119830981 + AT_rich Low_complexity Low_complexity 1 30 0 253 90 90 0 chr4 64457916 64458005 -119830657 + (TA)n Simple_repeat Simple_repeat 2 98 0 23 0 0 0 chr4 64458315 64458338 -119830324 + AT_rich Low_complexity Low_complexity 1 23 0 715 294 79 33 chr4 64459215 64459518 -119829144 + L1MEd LINE L1 26 342 -5777 2163 141 22 11 chr4 64460161 64460523 -119828139 + MER47A DNA MER2_type 1 366 0 182 289 0 39 chr4 64460628 64460680 -119827982 + L3b LINE CR1 1465 1514 -69 207 255 0 0 chr4 64461031 64461078 -119827584 - L2 LINE L2 -6 3266 3220 2042 177 76 21 chr4 64461390 64461961 -119826701 + L1M3 LINE L1 4886 5510 -658 255 31 0 0 chr4 64461961 64461993 -119826669 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 2042 177 76 21 chr4 64461993 64462183 -119826479 + L1M3 LINE L1 5510 5688 -480 11040 121 28 13 chr4 64462227 64463209 -119825453 + Tigger2 DNA MER2_type 2 1023 -1695 581 77 39 19 chr4 64463209 64463313 -119825349 - L1PB1 LINE L1 0 6151 6046 11040 121 28 13 chr4 64463313 64464080 -119824582 + Tigger2 DNA MER2_type 1023 1777 -941 3305 143 27 70 chr4 64464075 64464737 -119823925 + Tigger2 DNA MER2_type 2084 2717 -1 * 397 174 0 0 chr4 64464737 64464806 -119823856 + L1MB1 LINE L1 6097 6165 -3 1965 114 0 14 chr4 64465124 64465404 -119823258 + AluSc SINE Alu 1 276 -33 263 290 29 0 chr4 64466144 64466213 -119822449 - LTR16C LTR ERVL 0 491 421 2177 69 0 31 chr4 64466430 64466746 -119821916 + AluY SINE Alu 1 307 0 1508 123 123 11 chr4 64466855 64467123 -119821539 + AluSg1 SINE Alu 5 302 -7 408 287 230 19 chr4 64467784 64467993 -119820669 + MIR SINE MIR 8 260 -2 26 30 0 0 chr4 64469466 64469499 -119819163 + AT_rich Low_complexity Low_complexity 1 33 0 894 224 29 0 chr4 64469663 64469833 -119818829 - MER20 DNA MER1_type 0 219 45 * 4557 144 8 6 chr4 64469826 64470535 -119818127 - MER50 LTR ERV1 -23 711 1 2265 110 0 7 chr4 64470836 64471146 -119817516 - AluSc SINE Alu -1 308 1 770 207 121 20 chr4 64471583 64471781 -119816881 - MER20 DNA MER1_type 0 219 2 234 321 9 47 chr4 64473134 64473240 -119815422 - L2 LINE L2 0 3313 3212 2231 123 0 0 chr4 64473632 64473991 -119814671 - AluSx SINE Alu 0 362 4 878 267 28 28 chr4 64474971 64475218 -119813444 - MIR SINE MIR -9 253 7 269 336 55 0 chr4 64475353 64475463 -119813199 - L2 LINE L2 -2 3270 3155 203 347 151 33 chr4 64475498 64476008 -119812654 + L2 LINE L2 865 1434 -1880 4482 173 65 30 chr4 64476276 64477268 -119811394 + L1MA9 LINE L1 5274 6299 -13 1878 135 10 0 chr4 64477511 64477800 -119810862 + L1PA15 LINE L1 5853 6144 -21 229 95 0 71 chr4 64477807 64477849 -119810813 - Tigger1 DNA MER2_type -187 2231 2193 194 368 132 28 chr4 64477936 64478444 -119810218 - L2 LINE L2 -2181 1133 573 477 0 0 0 chr4 64478454 64478507 -119810155 + (TG)n Simple_repeat Simple_repeat 2 54 0 585 318 146 0 chr4 64479766 64479986 -119808676 - MIR SINE MIR -10 252 1 682 256 51 101 chr4 64480210 64480585 -119808077 - MLT1K LTR MaLR -9 579 224 28 29 0 0 chr4 64480948 64480983 -119807679 + AT_rich Low_complexity Low_complexity 1 35 0 3972 152 48 41 chr4 64481231 64482114 -119806548 + L1MA9 LINE L1 4935 5827 -485 243 0 0 0 chr4 64482114 64482141 -119806521 + (CA)n Simple_repeat Simple_repeat 2 28 0 3972 152 48 41 chr4 64482141 64482394 -119806268 + L1MA9 LINE L1 5827 6077 -235 486 164 48 0 chr4 64482402 64482506 -119806156 + L1MA9 LINE L1 6182 6290 -22 1474 201 52 63 chr4 64483808 64484270 -119804392 + LTR16A1 LTR ERVL 1 457 0 920 192 39 20 chr4 64485074 64485277 -119803385 - AluJo SINE Alu -19 293 87 42 57 0 0 chr4 64485301 64485371 -119803291 + AT_rich Low_complexity Low_complexity 1 70 0 24 77 0 0 chr4 64485487 64485539 -119803123 + AT_rich Low_complexity Low_complexity 1 52 0 2166 119 0 0 chr4 64485560 64485853 -119802809 - AluSg SINE Alu -15 295 3 782 266 80 0 chr4 64487168 64487232 -119801430 + MIR SINE MIR 3 60 -202 2408 111 114 7 chr4 64487232 64487637 -119801025 + MER83 LTR ERV1 1 448 0 782 266 80 0 chr4 64487637 64487809 -119800853 + MIR SINE MIR 60 258 -4 227 152 0 0 chr4 64488399 64488432 -119800230 + polypurine Low_complexity Low_complexity 4 36 0 508 131 0 20 chr4 64488433 64488532 -119800130 + (GGGAA)n Simple_repeat Simple_repeat 3 99 0 271 278 93 37 chr4 64489161 64489269 -119799393 + L2 LINE L2 3200 3313 0 461 250 113 48 chr4 64491012 64491180 -119797482 + MIR SINE MIR 18 196 -66 1255 164 7 65 chr4 64492246 64492521 -119796141 + AluJb SINE Alu 41 299 -13 180 111 0 0 chr4 64492796 64492823 -119795839 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 224 293 0 80 chr4 64493357 64493432 -119795230 - MIR SINE MIR -76 186 118 297 239 301 62 chr4 64493448 64493657 -119795005 + MER112 DNA MER1_type 1 259 -1 382 57 0 0 chr4 64494262 64494315 -119794347 + L1MA5 LINE L1 6244 6296 -4 282 333 0 8 chr4 64494507 64494601 -119794061 + MIR SINE MIR 16 106 -102 26 30 0 0 chr4 64494666 64494699 -119793963 + AT_rich Low_complexity Low_complexity 1 33 0 493 197 7 15 chr4 64494993 64495130 -119793532 + GA-rich Low_complexity Low_complexity 1 136 0 402 300 29 0 chr4 64495751 64495891 -119792771 - MIR SINE MIR -49 213 70 216 0 0 0 chr4 64495978 64496002 -119792660 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 651 13 0 0 chr4 64496007 64496082 -119792580 - L1PA4 LINE L1 -8 6147 6073 647 232 30 24 chr4 64496327 64496491 -119792171 - MIR SINE MIR 0 262 98 33 25 0 0 chr4 64497098 64497138 -119791524 + AT_rich Low_complexity Low_complexity 1 40 0 182 279 0 0 chr4 64497516 64497559 -119791103 - MIR SINE MIR -136 72 30 24 53 0 0 chr4 64497975 64498013 -119790649 + AT_rich Low_complexity Low_complexity 1 38 0 3533 216 96 27 chr4 64498387 64499417 -119789245 - L1MC4 LINE L1 -6 8036 6930 215 31 31 0 chr4 64499417 64499449 -119789213 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 3533 216 96 27 chr4 64499449 64499472 -119789190 - L1MC4 LINE L1 -1112 6930 6910 182 289 0 79 chr4 64499547 64499623 -119789039 - L2 LINE L2 -15 3298 3229 473 178 8 93 chr4 64500234 64500352 -119788310 - MIR SINE MIR -28 234 127 186 71 0 0 chr4 64501144 64501172 -119787490 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 368 261 80 72 chr4 64501176 64501314 -119787348 - L2 LINE L2 -16 3256 3118 1907 140 17 0 chr4 64501477 64501770 -119786892 + AluSq SINE Alu 1 298 -15 33 56 0 0 chr4 64501851 64501905 -119786757 + AT_rich Low_complexity Low_complexity 1 54 0 6431 83 2 3 chr4 64502382 64503676 -119784986 + L1PB1 LINE L1 4859 6151 0 23 0 0 0 chr4 64503867 64503890 -119784772 + AT_rich Low_complexity Low_complexity 1 23 0 396 196 116 9 chr4 64505325 64505437 -119783225 + Charlie4 DNA MER1_type 1819 1942 -19 525 173 110 8 chr4 64506352 64506479 -119782183 + Charlie4 DNA MER1_type 1821 1960 -1 21 89 0 0 chr4 64506688 64506744 -119781918 + AT_rich Low_complexity Low_complexity 1 56 0 302 207 122 0 chr4 64507880 64507962 -119780700 - MLT1L LTR MaLR -347 268 177 1930 264 61 19 chr4 64508552 64509091 -119779571 + MER69B DNA AcHobo 3 564 -662 1725 229 45 84 chr4 64509126 64509688 -119778974 + MLT1E LTR MaLR 53 592 -1 1423 231 131 34 chr4 64509943 64510432 -119778230 + MER69B DNA AcHobo 598 1151 -1375 1728 153 18 21 chr4 64510432 64510714 -119777948 - AluJo SINE Alu -30 282 2 1423 231 131 34 chr4 64510714 64510790 -119777872 + MER69B DNA AcHobo 1151 1218 -8 1950 134 26 3 chr4 64511000 64511306 -119777356 - AluSq SINE Alu 0 313 1 625 313 74 38 chr4 64511758 64512170 -119776492 + L2 LINE L2 1403 1829 -1485 2302 113 0 0 chr4 64512199 64512500 -119776162 - AluSx SINE Alu -11 301 1 4588 55 9 0 chr4 64512851 64513431 -119775231 - L1PA6 LINE L1 -1300 4846 4262 7259 59 0 1 chr4 64513431 64514737 -119773925 + L1PA6 LINE L1 4846 6154 0 1399 202 35 46 chr4 64514742 64515089 -119773573 - MLT1A2 LTR MaLR -28 346 4 247 323 132 0 chr4 64515429 64515596 -119773066 + L2 LINE L2 2013 2201 -1113 304 143 45 0 chr4 64515646 64515758 -119772904 + (TA)n Simple_repeat Simple_repeat 1 117 0 22 0 0 0 chr4 64515758 64515780 -119772882 + AT_rich Low_complexity Low_complexity 1 22 0 990 300 43 37 chr4 64515780 64516316 -119772346 + L2 LINE L2 2236 2774 -540 314 216 37 6 chr4 64516559 64516721 -119771941 + (TA)n Simple_repeat Simple_repeat 2 168 0 1182 277 121 34 chr4 64516892 64517313 -119771349 - MLT1L LTR MaLR -2 613 129 3697 126 41 14 chr4 64517313 64517900 -119770762 - LTR26 LTR ERV1 0 603 1 1182 277 121 34 chr4 64517900 64518042 -119770620 - MLT1L LTR MaLR -486 129 1 270 56 0 0 chr4 64518285 64518321 -119770341 + (TTA)n Simple_repeat Simple_repeat 2 37 0 1894 136 23 10 chr4 64520015 64520317 -119768345 + AluSx SINE Alu 1 306 -6 21 82 0 0 chr4 64520584 64520633 -119768029 + AT_rich Low_complexity Low_complexity 1 49 0 4377 110 5 5 chr4 64520889 64521488 -119767174 - LTR9 LTR ERV1 0 612 14 2721 130 61 90 chr4 64521727 64522318 -119766344 - MER4B LTR ERV1 -36 574 1 4055 147 13 25 chr4 64522400 64522668 -119765994 - LTR58 LTR ERV1 -5 674 404 3893 116 40 30 chr4 64522668 64523297 -119765365 + MER41B LTR ERV1 1 635 0 4055 147 13 25 chr4 64523297 64523710 -119764952 - LTR58 LTR ERV1 -275 404 1 28 0 0 0 chr4 64524986 64525014 -119763648 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr4 64525545 64525590 -119763072 + AT_rich Low_complexity Low_complexity 1 45 0 31 68 0 0 chr4 64526437 64526496 -119762166 + AT_rich Low_complexity Low_complexity 1 59 0 249 118 0 0 chr4 64526598 64526632 -119762030 - MLT1A1 LTR MaLR -1 364 331 228 219 0 0 chr4 64526836 64526880 -119761782 + polypurine Low_complexity Low_complexity 1 44 0 182 200 33 50 chr4 64527139 64527199 -119761463 - MIR SINE MIR -73 135 77 1917 133 22 32 chr4 64529157 64529472 -119759190 + AluJo SINE Alu 1 312 0 193 299 26 13 chr4 64531123 64531200 -119757462 - MIR3 SINE MIR -14 194 117 1015 199 70 6 chr4 64533528 64533798 -119754864 - MLT1A1 LTR MaLR -25 340 1 367 327 83 24 chr4 64534093 64534261 -119754401 + MIR3 SINE MIR 23 200 -8 1889 197 65 18 chr4 64534414 64534861 -119753801 + MER50 LTR ERV1 240 707 -27 2273 82 0 3 chr4 64534861 64535153 -119753509 + THE1B-int LTR MaLR 1290 1580 0 2400 149 6 3 chr4 64535153 64535516 -119753146 + THE1B LTR MaLR 1 364 0 10952 176 49 33 chr4 64535516 64537030 -119751632 + L1MA4 LINE L1 2299 3787 -2513 2249 102 0 0 chr4 64537030 64537314 -119751348 + AluSx SINE Alu 1 284 -28 10952 176 49 33 chr4 64537314 64537872 -119750790 + L1MA4 LINE L1 3787 4334 -1966 2295 132 36 14 chr4 64537872 64538228 -119750434 + THE1B LTR MaLR 1 364 0 10952 176 49 33 chr4 64538228 64540057 -119748605 + L1MA4 LINE L1 4334 6164 -136 2084 227 63 56 chr4 64540258 64540379 -119748283 + LTR65 LTR ERV1 1 120 -549 378 0 0 0 chr4 64540379 64540421 -119748241 + (CA)n Simple_repeat Simple_repeat 2 43 0 2084 227 63 56 chr4 64540421 64540902 -119747760 + LTR65 LTR ERV1 120 611 -58 1950 133 63 28 chr4 64540902 64541264 -119747398 + THE1C LTR MaLR 1 375 0 2084 227 63 56 chr4 64541264 64541322 -119747340 + LTR65 LTR ERV1 611 667 -2 2508 64 7 0 chr4 64541369 64541666 -119746996 + AluY SINE Alu 9 307 -4 277 167 0 0 chr4 64542317 64542365 -119746297 - HsTC2 DNA Tc2 0 1898 1851 789 153 207 16 chr4 64542432 64542688 -119745974 + LTR54B LTR ERV1 16 366 -144 276 355 39 13 chr4 64543134 64543289 -119745373 + MIR3 SINE MIR 45 203 -5 2044 126 0 16 chr4 64545017 64545326 -119743336 + AluJb SINE Alu 1 304 -8 2247 120 0 0 chr4 64545932 64546241 -119742421 - AluSq SINE Alu 0 313 5 679 221 5 58 chr4 64546319 64546509 -119742153 + MIR SINE MIR 36 215 -47 193 283 0 0 chr4 64546534 64546580 -119742082 - L2 LINE L2 -33 3280 3235 1297 331 62 24 chr4 64546608 64547563 -119741099 - L2 LINE L2 -160 3153 2157 1950 159 3 3 chr4 64547621 64547923 -119740739 + AluSx SINE Alu 4 305 -7 198 0 0 0 chr4 64548379 64548401 -119740261 + (TG)n Simple_repeat Simple_repeat 1 22 0 304 230 29 0 chr4 64548401 64548504 -119740158 + L1MC4 LINE L1 1996 6983 -1339 293 230 90 20 chr4 64549178 64549278 -119739384 + MIR SINE MIR 124 230 -32 444 330 40 47 chr4 64549381 64549681 -119738981 - L2 LINE L2 -168 3145 2848 2342 85 0 19 chr4 64550226 64550533 -119738129 + AluY SINE Alu 1 301 -10 2135 60 0 0 chr4 64552054 64552305 -119736357 + AluSc SINE Alu 55 305 -4 738 189 106 66 chr4 64552385 64552621 -119736041 + L1MC4 LINE L1 6962 7100 -965 1804 144 4 7 chr4 64552686 64552957 -119735705 + AluSq SINE Alu 1 270 -43 1688 165 10 10 chr4 64553514 64553805 -119734857 + AluJo SINE Alu 5 295 -17 337 299 0 12 chr4 64556224 64556372 -119732290 - AluSc SINE Alu -55 244 134 244 157 11 124 chr4 64558657 64558746 -119729916 + Charlie3 DNA MER1_type 2628 2706 -4 268 359 0 0 chr4 64561871 64561963 -119726699 + L2 LINE L2 3194 3285 -28 1669 187 3 23 chr4 64562197 64562496 -119726166 + AluJo SINE Alu 1 293 -19 559 252 50 54 chr4 64562539 64562761 -119725901 + MER58A DNA MER1_type 1 221 -3 223 283 0 0 chr4 64563467 64563527 -119725135 - L2 LINE L2 -54 3259 3200 2202 101 3 0 chr4 64563530 64563818 -119724844 - AluSg1 SINE Alu -20 289 1 1718 111 4 16 chr4 64564628 64564880 -119723782 - AluSx SINE Alu -21 291 43 1095 307 56 59 chr4 64564926 64565561 -119723101 - L2 LINE L2 -5 3308 2665 411 300 94 22 chr4 64566030 64566210 -119722452 - L2 LINE L2 -307 3006 2814 193 311 0 0 chr4 64566207 64566252 -119722410 + L2 LINE L2 3137 3181 -91 * 243 276 200 52 chr4 64566284 64566494 -119722168 - MIR SINE MIR -7 255 15 895 135 0 0 chr4 64566876 64567009 -119721653 + AluSg/x SINE Alu 174 306 -6 21 82 0 0 chr4 64567277 64567326 -119721336 + AT_rich Low_complexity Low_complexity 1 49 0 2276 167 2 35 chr4 64567582 64568068 -119720594 - LTR9 LTR ERV1 0 612 143 482 234 39 13 chr4 64568381 64568535 -119720127 + MLT1B LTR MaLR 205 362 -28 7045 61 8 26 chr4 64568540 64569819 -119718843 - L1PA6 LINE L1 0 6154 4886 2258 114 0 0 chr4 64570827 64571125 -119717537 - AluSg SINE Alu -12 298 1 3912 108 48 3 chr4 64571610 64572194 -119716468 + MER4B LTR ERV1 1 610 0 796 174 0 0 chr4 64573087 64573219 -119715443 - FLAM_C SINE Alu -1 132 1 26 50 0 0 chr4 64573421 64573461 -119715201 + AT_rich Low_complexity Low_complexity 1 40 0 1661 135 4 0 chr4 64574681 64574926 -119713736 + AluSq SINE Alu 1 246 -67 2481 43 3 7 chr4 64574941 64575245 -119713417 + AluY SINE Alu 1 303 -8 690 150 30 0 chr4 64575245 64575378 -119713284 - L1M4 LINE L1 -866 5280 5144 1785 217 67 14 chr4 64575421 64575855 -119712807 - L1MDa LINE L1 -6066 474 18 412 364 88 26 chr4 64576184 64576489 -119712173 + L2 LINE L2 2423 2746 -568 226 157 0 78 chr4 64576759 64576793 -119711869 - MLT2D LTR ERVL 0 414 384 1783 163 20 16 chr4 64576793 64577099 -119711563 + AluJb SINE Alu 1 307 -5 226 157 0 78 chr4 64577099 64577115 -119711547 - MLT2D LTR ERVL -30 384 368 1636 192 122 41 chr4 64577148 64577162 -119711500 - MLT2B1 LTR ERVL -41 479 468 1591 153 4 23 chr4 64577162 64577423 -119711239 - AluSx SINE Alu -22 290 35 1636 192 122 41 chr4 64577423 64577851 -119710811 - MLT2B1 LTR ERVL -52 468 1 2034 121 0 51 chr4 64578483 64578798 -119709864 + AluSx SINE Alu 1 299 -13 360 0 0 0 chr4 64579149 64579189 -119709473 + (TA)n Simple_repeat Simple_repeat 1 40 0 1571 192 16 35 chr4 64579258 64579575 -119709087 - AluJo SINE Alu -1 311 1 21 36 0 0 chr4 64579688 64579716 -119708946 + AT_rich Low_complexity Low_complexity 1 28 0 24 41 0 20 chr4 64579856 64579868 -119708794 + AT_rich Low_complexity Low_complexity 1 12 -36 1887 155 134 11 chr4 64579868 64580249 -119708413 - MSTA LTR MaLR 0 428 1 24 41 0 20 chr4 64580249 64580285 -119708377 + AT_rich Low_complexity Low_complexity 12 48 0 546 277 7 0 chr4 64581835 64581983 -119706679 + MER105 DNA DNA 1 149 -55 369 266 85 11 chr4 64582091 64582185 -119706477 - L2 LINE L2 0 3272 3172 4287 155 30 10 chr4 64582311 64582666 -119705996 + L1MA8 LINE L1 4967 5313 -978 4287 154 24 11 chr4 64582666 64582771 -119705891 + L1MA8 LINE L1 5477 5579 -712 2807 10 0 0 chr4 64582771 64583079 -119705583 + AluYb8 SINE Alu 1 308 -10 4287 154 24 11 chr4 64583079 64583771 -119704891 + L1MA8 LINE L1 5579 6285 -6 4287 155 30 10 chr4 64583771 64583786 -119704876 + L1MA8 LINE L1 5313 6285 -6 34 55 0 0 chr4 64584203 64584258 -119704404 + AT_rich Low_complexity Low_complexity 1 55 0 1827 128 0 8 chr4 64584388 64584645 -119704017 + AluSx SINE Alu 38 292 -20 398 379 41 6 chr4 64584718 64584887 -119703775 + MIR3 SINE MIR 6 180 -28 1849 120 0 81 chr4 64585079 64585411 -119703251 - AluSx SINE Alu 0 307 1 1628 164 73 28 chr4 64585710 64585996 -119702666 - AluJb SINE Alu -13 299 1 609 14 0 0 chr4 64586251 64586321 -119702341 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 330 287 7 87 chr4 64586335 64586485 -119702177 - MIR SINE MIR -8 254 117 264 167 0 0 chr4 64586736 64586784 -119701878 + (TG)n Simple_repeat Simple_repeat 1 48 0 193 347 74 11 chr4 64586784 64586879 -119701783 - L2 LINE L2 -1504 1810 1710 2815 253 27 13 chr4 64587208 64588216 -119700446 - L1M4 LINE L1 -3015 3131 2110 236 321 12 12 chr4 64588510 64588591 -119700071 - L2 LINE L2 -4 3268 3188 2116 164 32 3 chr4 64588666 64589043 -119699619 - MLT1B LTR MaLR 0 390 3 54 29 0 0 chr4 64589043 64589111 -119699551 + AT_rich Low_complexity Low_complexity 1 68 0 233 330 21 11 chr4 64590080 64590174 -119698488 - MIR3 SINE MIR 0 208 114 261 234 28 37 chr4 64590555 64590662 -119698000 + (CATATA)n Simple_repeat Simple_repeat 3 108 0 24 0 0 0 chr4 64591157 64591181 -119697481 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 64591354 64591375 -119697287 + AT_rich Low_complexity Low_complexity 1 21 0 5374 112 13 0 chr4 64591838 64592669 -119695993 + L1PA14 LINE L1 5309 6150 -11 1497 98 0 15 chr4 64593547 64593751 -119694911 - AluSg/x SINE Alu -5 305 105 291 93 0 0 chr4 64594878 64594921 -119693741 + (TG)n Simple_repeat Simple_repeat 2 44 0 279 350 203 14 chr4 64594925 64595279 -119693383 - L2 LINE L2 -437 2877 2457 477 316 64 47 chr4 64595290 64595524 -119693138 + L3 LINE CR1 436 673 -904 193 250 167 0 chr4 64595562 64595634 -119693028 + L3 LINE CR1 1224 1307 -270 2057 136 10 13 chr4 64595737 64596045 -119692617 - AluSx SINE Alu -5 307 1 2124 122 10 13 chr4 64596262 64596573 -119692089 + AluSx SINE Alu 1 310 -2 2251 103 7 7 chr4 64597959 64598269 -119690393 + AluSg SINE Alu 1 310 0 27 0 0 0 chr4 64598471 64598498 -119690164 + AT_rich Low_complexity Low_complexity 1 27 0 6500 156 15 4 chr4 64599761 64600888 -119687774 + L1PA8A LINE L1 1 1139 -4736 23749 135 9 42 chr4 64600889 64601550 -119687112 + L1PA8A LINE L1 1180 1861 -4585 1926 106 99 0 chr4 64601550 64601823 -119686839 + AluSg SINE Alu 1 300 -10 23749 135 9 42 chr4 64601823 64606393 -119682269 + L1PA8A LINE L1 1861 6230 -216 953 255 135 10 chr4 64606437 64606942 -119681720 - L1ME LINE L1 -348 5822 5255 22 0 0 0 chr4 64606944 64606966 -119681696 + AT_rich Low_complexity Low_complexity 1 22 0 976 160 61 0 chr4 64606978 64607190 -119681472 + MER34 LTR ERV1 27 251 -291 1483 131 0 0 chr4 64607197 64607395 -119681267 + AluSq SINE Alu 23 220 -93 2353 53 0 0 chr4 64607650 64607931 -119680731 - AluY SINE Alu -30 281 1 1004 144 22 17 chr4 64607931 64608112 -119680550 + MER34 LTR ERV1 361 542 0 442 254 42 97 chr4 64608113 64608330 -119680332 - L1ME LINE L1 -913 5233 5029 241 243 40 0 chr4 64608331 64608405 -119680257 + L2 LINE L2 1821 1897 -1417 1391 312 119 16 chr4 64608406 64609095 -119679567 + L2 LINE L2 2236 2995 -318 224 271 17 0 chr4 64609093 64609152 -119679510 + L2 LINE L2 3254 3313 0 * 1136 186 42 17 chr4 64609238 64609474 -119679188 - L1PB4 LINE L1 -7 6149 5908 274 299 15 90 chr4 64609777 64609911 -119678751 - L3 LINE CR1 -11 1566 1443 1112 160 0 11 chr4 64609985 64610160 -119678502 + FAM SINE Alu 1 173 -2 237 369 82 0 chr4 64610607 64610729 -119677933 + L2 LINE L2 3136 3267 -5 234 245 0 0 chr4 64611983 64612032 -119676630 + GA-rich Low_complexity Low_complexity 1 49 0 196 30 61 0 chr4 64613685 64613718 -119674944 + T-rich Low_complexity Low_complexity 1 35 0 281 261 172 37 chr4 64613754 64613888 -119674774 + L2 LINE L2 3162 3313 0 440 258 58 25 chr4 64614115 64614235 -119674427 + MIR SINE MIR 9 132 -130 196 238 16 79 chr4 64614261 64614324 -119674338 + MIR SINE MIR 204 262 0 21 0 0 0 chr4 64615682 64615703 -119672959 + AT_rich Low_complexity Low_complexity 1 21 0 35 63 0 0 chr4 64615926 64615989 -119672673 + AT_rich Low_complexity Low_complexity 1 63 0 207 280 48 56 chr4 64616092 64616217 -119672445 - MIR SINE MIR -52 210 87 1174 186 13 30 chr4 64617394 64617630 -119671032 + AluJo SINE Alu 29 260 -52 222 37 0 0 chr4 64617648 64617675 -119670987 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 207 0 0 0 chr4 64618763 64618786 -119669876 + (TG)n Simple_repeat Simple_repeat 1 23 0 203 243 0 14 chr4 64618787 64618809 -119669853 + (TA)n Simple_repeat Simple_repeat 1 22 -51 7947 123 26 16 chr4 64618809 64620095 -119668567 + HSMAR2 DNA Mariner 4 1301 -1 203 243 0 14 chr4 64620095 64620146 -119668516 + (TA)n Simple_repeat Simple_repeat 22 73 0 310 271 59 17 chr4 64620173 64620291 -119668371 + L1MC/D LINE L1 5038 5160 -986 350 283 90 30 chr4 64620368 64620668 -119667994 + L1MC/D LINE L1 5262 5542 -622 282 231 51 13 chr4 64621402 64621480 -119667182 + CT-rich Low_complexity Low_complexity 1 81 0 435 333 80 4 chr4 64621480 64621717 -119666945 + MIR SINE MIR 8 262 0 228 356 68 17 chr4 64621731 64621849 -119666813 - L2 LINE L2 -9 3304 3181 333 293 79 49 chr4 64623291 64623455 -119665207 + L2 LINE L2 3104 3272 0 333 232 0 0 chr4 64624474 64624543 -119664119 + MER5A DNA MER1_type 14 82 -107 373 296 16 86 chr4 64625910 64626096 -119662566 + MER5A DNA MER1_type 7 179 -10 265 388 99 31 chr4 64626268 64626590 -119662072 - L2 LINE L2 -49 3223 2880 326 315 185 30 chr4 64626680 64627074 -119661588 + L2 LINE L2 2289 2743 -571 388 315 158 16 chr4 64627291 64627475 -119661187 + MIR SINE MIR 40 249 -13 217 322 56 117 chr4 64627537 64627897 -119660765 + L2 LINE L2 2888 3225 -47 300 310 61 41 chr4 64628344 64628541 -119660121 - L2 LINE L2 -1 3312 3112 422 228 198 74 chr4 64629307 64629469 -119659193 + MIR SINE MIR 81 262 0 186 269 0 64 chr4 64629807 64629885 -119658777 + L2 LINE L2 2012 2084 -1230 251 375 83 0 chr4 64629902 64630046 -119658616 - L2 LINE L2 0 3272 3117 541 272 6 18 chr4 64630046 64630215 -119658447 + L1MEd LINE L1 4 170 -5949 469 373 16 40 chr4 64630245 64630548 -119658114 + L1MEd LINE L1 245 540 -5579 1305 32 0 0 chr4 64630561 64630718 -119657944 - L1PA4 LINE L1 -3 6152 5996 956 156 66 12 chr4 64630882 64631169 -119657493 - THE1C LTR MaLR 0 375 1 1667 86 0 0 chr4 64631317 64631549 -119657113 + L1MA2 LINE L1 6073 6304 0 501 220 99 0 chr4 64631581 64631763 -119656899 + L1MEd LINE L1 893 1092 -5027 838 320 74 14 chr4 64631846 64632330 -119656332 - L2 LINE L2 -997 2317 1805 275 234 16 31 chr4 64632756 64632820 -119655842 - MER117 DNA MER1_type 0 197 135 249 333 54 11 chr4 64632937 64633030 -119655632 + MER91C DNA MER1_type 32 128 -12 180 0 0 0 chr4 64633832 64633852 -119654810 + (T)n Simple_repeat Simple_repeat 1 20 0 417 198 12 0 chr4 64633910 64633996 -119654666 - FLAM_A SINE Alu -9 133 47 1346 152 130 7 chr4 64633998 64634274 -119654388 + L1MA3 LINE L1 5996 6305 0 342 246 0 0 chr4 64634292 64634353 -119654309 - FRAM/FAM SINE Alu -105 61 1 2147 113 0 0 chr4 64634369 64634661 -119654001 + AluY SINE Alu 1 292 -19 396 248 129 55 chr4 64635141 64635219 -119653443 - HAL1b LINE L1 0 1348 1277 2059 139 0 16 chr4 64635219 64635529 -119653133 + AluSx SINE Alu 1 305 -7 396 248 129 55 chr4 64635529 64635761 -119652901 - HAL1b LINE L1 -71 1277 1015 186 304 0 0 chr4 64636159 64636205 -119652457 + MIR SINE MIR 105 150 -112 1641 225 171 50 chr4 64636911 64637639 -119651023 - Charlie7 DNA MER1_type -1 2611 1768 2105 113 7 0 chr4 64637639 64637932 -119650730 - AluSx SINE Alu -17 295 1 1641 225 171 50 chr4 64637932 64638040 -119650622 - Charlie7 DNA MER1_type -844 1768 1674 748 248 68 115 chr4 64638030 64638603 -119650059 - Charlie7 DNA MER1_type -2066 546 1 * 264 211 53 0 chr4 64638665 64638722 -119649940 - L2 LINE L2 0 3313 3254 1189 346 73 35 chr4 64639098 64640307 -119648355 - L2 LINE L2 0 3272 2022 395 302 0 0 chr4 64640323 64640439 -119648223 - MIR3 SINE MIR -1 207 92 212 366 27 9 chr4 64640551 64640663 -119647999 + MIR SINE MIR 29 142 -120 734 204 95 0 chr4 64640999 64641146 -119647516 + MLT1A1 LTR MaLR 197 357 -8 209 349 112 12 chr4 64642410 64642579 -119646083 + L2 LINE L2 2343 2528 -786 446 271 93 0 chr4 64642783 64642934 -119645728 + LTR16A LTR ERVL 286 450 0 734 183 117 0 chr4 64643087 64643224 -119645438 - MER5A DNA MER1_type -36 153 1 185 326 167 29 chr4 64643509 64643647 -119645015 - L2 LINE L2 -5 3308 3152 199 336 37 65 chr4 64643941 64644048 -119644614 - L2 LINE L2 -633 2681 2578 210 280 0 0 chr4 64644101 64644151 -119644511 + MER5A DNA MER1_type 140 189 0 9458 155 40 12 chr4 64645451 64645703 -119642959 + L1MA4A LINE L1 3443 3687 -2616 2285 97 7 0 chr4 64645703 64646001 -119642661 + AluSg SINE Alu 1 300 -10 9458 155 40 12 chr4 64646001 64648000 -119640662 + L1MA4A LINE L1 3687 5629 -674 468 0 0 0 chr4 64648000 64648052 -119640610 + (TA)n Simple_repeat Simple_repeat 1 52 0 258 32 0 0 chr4 64648051 64648082 -119640580 + (CA)n Simple_repeat Simple_repeat 2 32 0 * 9458 155 40 12 chr4 64648052 64648196 -119640466 + L1MA4A LINE L1 5629 5768 -535 662 138 0 101 chr4 64648196 64648334 -119640328 + FLAM_C SINE Alu 2 125 -8 9458 155 40 12 chr4 64648334 64648742 -119639920 + L1MA4A LINE L1 5768 6303 0 21 0 0 0 chr4 64649665 64649686 -119638976 + AT_rich Low_complexity Low_complexity 1 21 0 400 235 111 56 chr4 64651063 64651225 -119637437 + MIR SINE MIR 25 195 -67 216 353 8 59 chr4 64651268 64651387 -119637275 + L2 LINE L2 3147 3259 -13 304 291 148 26 chr4 64652902 64653091 -119635571 - MIR SINE MIR -11 251 40 289 291 45 18 chr4 64653248 64653358 -119635304 + L2 LINE L2 2241 2353 -961 3435 31 26 0 chr4 64653358 64653781 -119634881 + L1PA5 LINE L1 5715 6148 -6 39 0 0 0 chr4 64653781 64653820 -119634842 + AT_rich Low_complexity Low_complexity 1 39 0 245 297 0 27 chr4 64653907 64653981 -119634681 + MIR SINE MIR 191 262 0 210 71 0 0 chr4 64654057 64654085 -119634577 + (A)n Simple_repeat Simple_repeat 1 28 0 231 355 59 41 chr4 64654365 64654534 -119634128 + MIR SINE MIR 33 204 -58 230 358 42 17 chr4 64654618 64654738 -119633924 + MIR SINE MIR 66 188 -74 41 36 0 0 chr4 64654799 64654854 -119633808 + AT_rich Low_complexity Low_complexity 1 55 0 13587 187 36 11 chr4 64655095 64659178 -119629484 + L1PB4 LINE L1 2572 6851 -7 201 314 49 29 chr4 64659216 64659318 -119629344 - L2 LINE L2 -229 3043 2940 1158 295 12 23 chr4 64660988 64661261 -119627401 + L2 LINE L2 2809 3077 -236 2441 57 0 0 chr4 64661261 64661560 -119627102 + AluY SINE Alu 1 299 -12 1158 295 12 23 chr4 64661560 64661713 -119626949 + L2 LINE L2 3077 3230 -83 241 222 32 0 chr4 64662997 64663060 -119625602 + CT-rich Low_complexity Low_complexity 4 68 0 588 209 7 0 chr4 64663217 64663356 -119625306 + L1MB7 LINE L1 6036 6175 -9 432 269 32 0 chr4 64664392 64664485 -119624177 - MER5A DNA MER1_type -83 106 11 1992 157 36 3 chr4 64664685 64665022 -119623640 + MER7A DNA MER2_type 1 346 0 706 284 80 10 chr4 64666331 64666532 -119622130 + MIR SINE MIR 14 228 -34 192 214 48 0 chr4 64666567 64666609 -119622053 + L2 LINE L2 3207 3250 -63 505 228 71 8 chr4 64666926 64667053 -119621609 + MIR SINE MIR 81 215 -47 37 62 0 0 chr4 64667118 64667183 -119621479 + AT_rich Low_complexity Low_complexity 1 65 0 242 149 21 0 chr4 64667183 64667230 -119621432 - L1MA9 LINE L1 -22 6290 6243 286 363 178 6 chr4 64667269 64667426 -119621236 - MIR3 SINE MIR -6 202 19 244 261 82 22 chr4 64667618 64667752 -119620910 + L2 LINE L2 1944 2085 -1229 273 198 95 48 chr4 64667759 64667885 -119620777 + L1MC5 LINE L1 7794 7925 -36 270 239 196 14 chr4 64667899 64668020 -119620642 + L2 LINE L2 2079 2224 -1090 434 309 31 57 chr4 64668020 64668214 -119620448 - MER5A DNA MER1_type 0 189 1 502 322 74 76 chr4 64668223 64668658 -119620004 + L2 LINE L2 2267 2700 -614 647 67 0 0 chr4 64668660 64668749 -119619913 + L1PA8 LINE L1 6083 6171 -1 250 402 0 0 chr4 64668855 64668937 -119619725 + L2 LINE L2 2973 3054 -259 410 227 113 44 chr4 64669146 64669349 -119619313 + L2 LINE L2 3097 3313 0 2224 94 0 7 chr4 64669372 64669660 -119619002 + AluSg SINE Alu 1 286 -24 636 302 182 6 chr4 64669847 64669928 -119618734 - L2 LINE L2 -1079 2235 2170 2287 68 34 3 chr4 64669928 64670223 -119618439 + AluY SINE Alu 1 304 -7 636 302 182 6 chr4 64670223 64670492 -119618170 - L2 LINE L2 -1144 2170 1823 368 319 129 5 chr4 64670492 64670702 -119617960 + L1ME LINE L1 5589 5736 -434 22 0 0 0 chr4 64671007 64671029 -119617633 + AT_rich Low_complexity Low_complexity 1 22 0 514 253 45 40 chr4 64671034 64671236 -119617426 - L2 LINE L2 -1480 1834 1632 766 177 51 44 chr4 64671360 64671518 -119617144 - FRAM SINE Alu -14 162 4 296 348 39 45 chr4 64675525 64675680 -119612982 + MIR3 SINE MIR 50 203 -5 24 67 0 0 chr4 64675892 64675937 -119612725 + AT_rich Low_complexity Low_complexity 1 45 0 331 303 73 83 chr4 64676089 64676403 -119612259 - L1ME4a LINE L1 -217 5904 5594 21 57 0 0 chr4 64677462 64677497 -119611165 + AT_rich Low_complexity Low_complexity 1 35 0 291 256 45 131 chr4 64677647 64677846 -119610816 + MIR SINE MIR 31 212 -50 309 26 0 0 chr4 64677886 64677924 -119610738 + (TG)n Simple_repeat Simple_repeat 2 39 0 4375 25 0 0 chr4 64678223 64678743 -119609919 - L1PA2 LINE L1 -1384 4762 4243 7876 12 0 0 chr4 64678743 64680128 -119608534 + L1PA2 LINE L1 4768 6152 -3 195 167 0 0 chr4 64680132 64680174 -119608488 + A-rich Low_complexity Low_complexity 1 42 0 456 339 63 55 chr4 64680477 64680840 -119607822 + L2 LINE L2 1217 1582 -1732 633 331 135 28 chr4 64680844 64681385 -119607277 + L2 LINE L2 2376 2974 -340 1839 185 0 0 chr4 64681541 64681844 -119606818 - AluJo SINE Alu -9 303 1 38 61 0 0 chr4 64681956 64682022 -119606640 + AT_rich Low_complexity Low_complexity 1 66 0 465 348 58 25 chr4 64682098 64682175 -119606487 + LTR16A LTR ERVL 6 79 -385 2332 187 87 15 chr4 64682175 64682693 -119605969 - MER74A LTR ERVL -3 555 1 465 348 58 25 chr4 64682693 64683008 -119605654 + LTR16A LTR ERVL 79 440 -24 2812 316 46 19 chr4 64683113 64684276 -119604386 + HERV16 LTR ERVL 102 1295 -3701 663 350 25 7 chr4 64684409 64684695 -119603967 + HERVL LTR ERVL 4106 4396 -1258 2317 68 0 3 chr4 64684812 64685106 -119603556 - AluY SINE Alu -18 293 1 4705 122 153 21 chr4 64686469 64687851 -119600811 - pTR5 LTR ERV1 0 2438 745 569 239 0 29 chr4 64688371 64688509 -119600153 - MLT1E2 LTR MaLR -441 185 52 2120 104 7 0 chr4 64689385 64689720 -119598942 + AluSc SINE Alu 1 337 0 2062 170 8 11 chr4 64689720 64690096 -119598566 - L1MC1 LINE L1 -7 6326 5952 1145 155 68 48 chr4 64690123 64690309 -119598353 - L1MC1 LINE L1 -534 5799 5605 2375 92 0 0 chr4 64690309 64690603 -119598059 + AluSg SINE Alu 1 294 -16 1145 155 68 48 chr4 64690603 64690668 -119597994 - L1MC1 LINE L1 -728 5605 5543 2308 104 0 0 chr4 64692192 64692491 -119596171 - AluSq SINE Alu -14 299 1 13492 151 12 20 chr4 64692493 64693218 -119595444 - L1M1 LINE L1 -520 7203 6473 1957 147 0 25 chr4 64693218 64693532 -119595130 + AluSx SINE Alu 3 308 -4 13492 151 12 20 chr4 64693532 64695855 -119592807 - L1M1 LINE L1 -1250 6473 4184 18576 164 30 7 chr4 64695875 64699101 -119589561 - L1M1 LINE L1 -4227 3338 38 531 91 11 11 chr4 64699261 64699349 -119589313 + L1PB4 LINE L1 6068 6155 -1 591 215 16 99 chr4 64699386 64699628 -119589034 - MER112 DNA MER1_type -19 241 20 994 208 59 10 chr4 64699927 64700129 -119588533 + MER20 DNA MER1_type 2 213 -6 186 296 37 12 chr4 64700639 64700720 -119587942 + MIR3 SINE MIR 120 202 -6 2013 276 120 43 chr4 64702546 64703127 -119585535 - HAL1 LINE L1 -1 2506 1972 393 75 0 0 chr4 64703127 64703180 -119585482 + (CA)n Simple_repeat Simple_repeat 2 54 0 2013 276 120 43 chr4 64703180 64703910 -119584752 - HAL1 LINE L1 -535 1972 1093 726 123 0 18 chr4 64704019 64704133 -119584529 + MSTD LTR MaLR 1 112 -284 211 150 33 33 chr4 64706012 64706072 -119582590 + (TA)n Simple_repeat Simple_repeat 2 61 0 1209 193 123 18 chr4 64706248 64706785 -119581877 + MLT1E1 LTR MaLR 3 654 0 482 188 51 65 chr4 64706785 64706923 -119581739 - L1MA8 LINE L1 -178 6113 5978 647 219 26 26 chr4 64706935 64707127 -119581535 + L1MA8 LINE L1 6100 6291 0 279 0 0 0 chr4 64707318 64707349 -119581313 + (CA)n Simple_repeat Simple_repeat 2 32 0 2478 62 0 3 chr4 64707396 64707700 -119580962 + AluY SINE Alu 7 309 -2 1113 252 84 2 chr4 64707904 64708380 -119580282 - L1MCa LINE L1 -2923 3503 2989 386 261 48 120 chr4 64709424 64709715 -119578947 + MLT1K LTR MaLR 319 588 0 571 279 49 20 chr4 64710333 64710537 -119578125 - L2 LINE L2 0 3313 3104 575 364 44 4 chr4 64710672 64710947 -119577715 - L2 LINE L2 -434 2880 2595 203 361 24 0 chr4 64711044 64711127 -119577535 - MIR3 SINE MIR -41 167 83 354 302 43 17 chr4 64711232 64711348 -119577314 + L3 LINE CR1 1048 1166 -411 207 0 0 0 chr4 64711373 64711396 -119577266 + (TA)n Simple_repeat Simple_repeat 1 23 0 238 191 48 0 chr4 64711400 64711463 -119577199 - L1MCa LINE L1 -4355 2071 2006 * 1310 123 13 3 chr4 64711458 64711480 -119577182 + L1PA12 LINE L1 5681 5701 -467 1098 43 7 0 chr4 64711480 64711621 -119577041 - L1PA13 LINE L1 -12 6151 6010 1310 123 13 3 chr4 64711621 64711832 -119576830 + L1PA12 LINE L1 5701 5887 -281 284 364 27 32 chr4 64711884 64712071 -119576591 + L3 LINE CR1 1262 1447 -130 21 0 0 0 chr4 64712166 64712187 -119576475 + AT_rich Low_complexity Low_complexity 1 21 0 1564 174 95 0 chr4 64712190 64712454 -119576208 - AluJo SINE Alu -23 289 1 327 345 158 15 chr4 64713840 64714182 -119574480 + L2 LINE L2 2922 3312 -1 1721 109 0 13 chr4 64714353 64714591 -119574071 - AluSg/x SINE Alu -13 299 65 2039 113 65 40 chr4 64715373 64715726 -119572936 - THE1B LTR MaLR 0 364 3 434 148 74 0 chr4 64716078 64716159 -119572503 + L1MA9 LINE L1 6226 6312 0 4578 186 18 27 chr4 64717572 64718559 -119570103 + MER52A LTR ERV1 793 1751 -4 184 281 83 83 chr4 64718792 64718886 -119569776 - MIR SINE MIR -66 142 46 2253 95 0 10 chr4 64718886 64719191 -119569471 - AluSx SINE Alu -10 302 1 184 281 83 83 chr4 64719191 64719217 -119569445 - MIR SINE MIR -161 47 22 859 321 83 20 chr4 64721142 64721541 -119567121 - L3 LINE CR1 -3 1574 1151 189 0 0 0 chr4 64721654 64721675 -119566987 + (T)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr4 64722935 64722956 -119565706 + AT_rich Low_complexity Low_complexity 1 21 0 515 268 25 38 chr4 64723028 64723185 -119565477 - MER5B DNA MER1_type -2 176 22 361 286 64 46 chr4 64723282 64723446 -119565216 + MIR SINE MIR 7 188 -52 225 0 0 0 chr4 64723950 64723975 -119564687 + (CA)n Simple_repeat Simple_repeat 2 26 0 306 323 70 13 chr4 64724068 64724252 -119564410 - MIR SINE MIR -61 201 2 182 301 238 42 chr4 64724928 64725071 -119563591 - MER5A DNA MER1_type -12 177 7 194 422 47 8 chr4 64726404 64726532 -119562130 + L2 LINE L2 3140 3272 0 311 291 254 0 chr4 64726788 64726953 -119561709 - MIR SINE MIR -30 232 26 264 313 147 20 chr4 64728381 64728531 -119560131 + MIR SINE MIR 1 169 -93 9240 188 12 26 chr4 64728532 64728598 -119560064 - L1PA16 LINE L1 -309 5857 5792 189 74 0 0 chr4 64728598 64728625 -119560037 + (TA)n Simple_repeat Simple_repeat 2 28 0 9240 188 12 26 chr4 64728625 64730545 -119558117 - L1PA16 LINE L1 -374 5792 3914 2200 118 0 0 chr4 64730545 64730834 -119557828 - AluSx SINE Alu -23 289 1 9240 188 12 26 chr4 64730834 64731501 -119557161 - L1PA16 LINE L1 -2252 3914 3239 1769 212 15 6 chr4 64731507 64731847 -119556815 + MER72 LTR ERV1 310 652 -70 401 324 89 29 chr4 64732482 64732763 -119555899 + L1ME LINE L1 4885 5182 -964 756 322 8 31 chr4 64732828 64733071 -119555591 + L1ME LINE L1 5258 5490 -672 1623 185 56 34 chr4 64733071 64733428 -119555234 + MLT1A1 LTR MaLR 1 365 0 756 322 8 31 chr4 64733428 64733572 -119555090 + L1ME LINE L1 5490 5636 -526 247 201 174 132 chr4 64735138 64735282 -119553380 + MER5A DNA MER1_type 37 186 -3 * 315 265 193 0 chr4 64735210 64735293 -119553369 - MER5A DNA MER1_type -84 105 7 862 296 73 0 chr4 64735637 64735870 -119552792 - MIR SINE MIR -1 261 12 276 417 8 0 chr4 64737037 64737157 -119551505 + L2 LINE L2 3150 3270 -2 869 245 74 55 chr4 64737814 64738493 -119550169 - L1MC5 LINE L1 -26 7935 7262 181 373 118 0 chr4 64738594 64738696 -119549966 + L2 LINE L2 3128 3241 -31 2393 76 0 25 chr4 64738985 64739301 -119549361 - AluY SINE Alu -1 310 3 348 355 80 7 chr4 64739626 64739764 -119548898 - MIR3 SINE MIR -28 180 33 200 254 30 15 chr4 64739826 64739893 -119548769 + (TTCA)n Simple_repeat Simple_repeat 4 71 0 1994 147 7 0 chr4 64740424 64740710 -119547952 + AluSx SINE Alu 3 290 -22 3181 183 42 3 chr4 64740891 64741492 -119547170 - MLT1E3 LTR MaLR 0 624 1 296 301 159 31 chr4 64742935 64743161 -119545501 - MIR SINE MIR -6 256 2 2278 148 6 0 chr4 64743767 64744104 -119544558 - MER1B DNA MER1_type 0 339 1 2166 107 14 0 chr4 64744362 64744653 -119544009 + AluSp SINE Alu 1 295 -18 813 301 53 4 chr4 64745561 64745807 -119542855 + MIR SINE MIR 4 261 -1 192 125 0 0 chr4 64746487 64746519 -119542143 + (TCCA)n Simple_repeat Simple_repeat 1 32 0 211 337 54 22 chr4 64746542 64746634 -119542028 - L2 LINE L2 -20 3293 3199 284 325 40 8 chr4 64746830 64746956 -119541706 + MIR SINE MIR 32 161 -101 290 269 160 51 chr4 64747037 64747193 -119541469 - MIR SINE MIR -70 192 20 205 313 121 16 chr4 64747335 64747521 -119541141 + MIR SINE MIR 34 259 -3 2326 124 30 28 chr4 64747667 64748030 -119540632 + THE1B LTR MaLR 1 364 0 11366 105 8 0 chr4 64748030 64749575 -119539087 + THE1B-int LTR MaLR 1 1557 -23 413 327 34 44 chr4 64749762 64749985 -119538677 - MIR SINE MIR -34 228 10 1973 181 42 0 chr4 64750977 64751308 -119537354 + THE1B LTR MaLR 20 364 0 4797 124 93 6 chr4 64751461 64752506 -119536156 + L1PA16 LINE L1 5043 6164 -2 457 278 158 34 chr4 64752569 64752778 -119535884 + MIR SINE MIR 7 241 -21 284 279 63 0 chr4 64753759 64753838 -119534824 - MIR SINE MIR -108 154 71 245 343 0 20 chr4 64754181 64754283 -119534379 - MER5B DNA MER1_type -73 105 6 279 363 0 0 chr4 64754374 64754454 -119534208 - L2 LINE L2 -38 3275 3196 1955 129 19 22 chr4 64754656 64755037 -119533625 - Tigger3(Golem) DNA MER2_type -1 3028 1 1082 67 0 0 chr4 64755126 64755260 -119533402 + AluY SINE Alu 1 134 -177 2206 76 3 13 chr4 64755260 64755563 -119533099 + AluY SINE Alu 1 300 -11 250 353 33 8 chr4 64755646 64755768 -119532894 - L2 LINE L2 -31 3282 3158 392 292 33 62 chr4 64759071 64759311 -119529351 - L1ME4a LINE L1 -11 6110 5878 1319 256 27 12 chr4 64759505 64759841 -119528821 + MER58B DNA MER1_type 1 341 0 206 322 87 71 chr4 64760171 64760354 -119528308 - MIR SINE MIR -54 208 23 2263 103 0 0 chr4 64760809 64761100 -119527562 + AluSq SINE Alu 1 291 -22 2304 91 29 83 chr4 64761184 64761569 -119527093 + THE1B LTR MaLR 1 364 0 612 148 174 0 chr4 64761578 64761727 -119526935 + MER53 DNA DNA 3 177 -12 456 162 68 17 chr4 64763413 64763530 -119525132 - MER113 DNA MER1_type? -392 129 7 193 344 114 15 chr4 64764354 64764485 -119524177 - L2 LINE L2 -232 3040 2897 1903 173 73 16 chr4 64765565 64765768 -119522894 - MSTB1 LTR MaLR -28 404 214 188 0 74 0 chr4 64765768 64765795 -119522867 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1903 173 73 16 chr4 64765795 64765973 -119522689 - MSTB1 LTR MaLR -218 214 1 22 0 0 0 chr4 64766830 64766852 -119521810 + AT_rich Low_complexity Low_complexity 1 22 0 2285 94 0 0 chr4 64767346 64767655 -119521007 + AluSx SINE Alu 1 309 0 575 146 29 0 chr4 64767930 64768033 -119520629 - L1MB8 LINE L1 0 6178 6073 402 338 71 13 chr4 64768176 64768487 -119520175 - L2 LINE L2 -271 3042 2708 1801 177 0 0 chr4 64768488 64768782 -119519880 - AluJb SINE Alu -18 294 1 1903 280 74 36 chr4 64769119 64769872 -119518790 + L2 LINE L2 729 1510 -1804 227 45 0 114 chr4 64770235 64770279 -119518383 - L1MA9 LINE L1 0 6312 6274 1371 159 20 64 chr4 64770293 64770588 -119518074 + AluJo SINE Alu 9 290 -22 1123 139 24 14 chr4 64770588 64770797 -119517865 - L1MA9 LINE L1 -40 6272 6062 2042 129 0 0 chr4 64770812 64771115 -119517547 + AluSq SINE Alu 5 307 0 219 275 127 24 chr4 64771371 64771504 -119517158 + MIR SINE MIR 13 151 -66 238 257 9 62 chr4 64772109 64772222 -119516440 - MIR SINE MIR -50 212 106 262 378 18 0 chr4 64772951 64773062 -119515600 - MIR SINE MIR -125 137 25 24 67 0 0 chr4 64773132 64773177 -119515485 + AT_rich Low_complexity Low_complexity 1 45 0 745 144 28 31 chr4 64773695 64773876 -119514786 - L1MC/D LINE L1 -494 5680 5516 338 323 78 31 chr4 64774010 64774304 -119514358 - L2 LINE L2 -1363 1951 1644 2150 121 3 7 chr4 64774498 64774804 -119513858 - AluSx SINE Alu -7 305 1 40 21 0 0 chr4 64775069 64775116 -119513546 + AT_rich Low_complexity Low_complexity 1 47 0 228 269 0 0 chr4 64775156 64775208 -119513454 - L2 LINE L2 0 3313 3262 250 263 13 118 chr4 64775483 64775635 -119513027 + MIR SINE MIR 87 222 -40 225 305 53 11 chr4 64777202 64777297 -119511365 - L1MC/D LINE L1 -1889 5919 5821 2079 66 26 46 chr4 64777297 64777599 -119511063 - AluY SINE Alu -15 296 1 435 271 19 32 chr4 64777772 64777980 -119510682 + MIR SINE MIR 1 262 0 225 170 64 0 chr4 64778087 64778134 -119510528 + CT-rich Low_complexity Low_complexity 4 53 0 297 322 186 6 chr4 64778149 64778332 -119510330 + MIR SINE MIR 6 221 -41 380 332 147 5 chr4 64778379 64778569 -119510093 + MIR SINE MIR 21 237 -25 187 298 158 35 chr4 64778798 64778912 -119509750 + MIR SINE MIR 2 129 -133 962 247 62 19 chr4 64778922 64779246 -119509416 + L1ME1 LINE L1 5825 6162 -4 589 318 36 9 chr4 64779297 64779520 -119509142 - MIR SINE MIR -21 241 13 42879 34 21 1 chr4 64780406 64786434 -119502228 - L1PA2 LINE L1 -2 6153 2 3249 111 12 8 chr4 64786435 64786929 -119501733 - L1PA10 LINE L1 -1 6167 5672 3080 132 12 0 chr4 64786929 64787429 -119501233 - L1PA10 LINE L1 -993 5153 4648 894 185 0 0 chr4 64787429 64787580 -119501082 - AluSg/x SINE Alu -6 306 156 2286 243 36 39 chr4 64787595 64788495 -119500167 - L1M4 LINE L1 -2203 3943 3047 1845 258 36 7 chr4 64788502 64789087 -119499575 - L1M4 LINE L1 -3311 2835 2234 8393 137 10 12 chr4 64789115 64791295 -119497367 - L1PA11 LINE L1 -2 7610 5417 12910 193 32 17 chr4 64791296 64792062 -119496600 - L1PA11 LINE L1 -2259 5325 4572 1856 139 0 31 chr4 64792062 64792356 -119496306 - AluSx SINE Alu -13 299 15 12910 193 32 17 chr4 64792356 64792785 -119495877 - L1PA11 LINE L1 -3012 4572 4151 459 0 0 0 chr4 64792785 64792836 -119495826 + (TG)n Simple_repeat Simple_repeat 2 52 0 12910 193 32 17 chr4 64792836 64794533 -119494129 - L1PA11 LINE L1 -3433 4151 2390 1321 105 0 0 chr4 64794587 64794758 -119493904 - AluSc SINE Alu -21 288 118 1693 225 139 41 chr4 64794761 64795428 -119493234 - L1PA11 LINE L1 -5285 2299 445 317 266 144 17 chr4 64795840 64796098 -119492564 - L1ME LINE L1 -575 5546 5254 305 339 26 26 chr4 64796178 64796370 -119492292 - L1ME LINE L1 -1000 5146 4955 1242 297 56 27 chr4 64796374 64796819 -119491843 + LTR16B LTR ERVL 1 458 -6 876 348 75 27 chr4 64796844 64797514 -119491148 + HERV16 LTR ERVL 78 779 -4217 1662 324 45 31 chr4 64797605 64798639 -119490023 + HERV16 LTR ERVL 913 2070 -3423 396 327 61 39 chr4 64798651 64799144 -119489518 - HAL1 LINE L1 -909 1598 1095 23 0 0 0 chr4 64800241 64800264 -119488398 + AT_rich Low_complexity Low_complexity 1 23 0 2466 143 20 36 chr4 64800431 64800829 -119487833 - Tigger2a DNA MER2_type -2274 434 42 2694 78 14 0 chr4 64800829 64801188 -119487474 + THE1B LTR MaLR 1 364 0 2466 143 20 36 chr4 64801188 64801230 -119487432 - Tigger2a DNA MER2_type -2666 42 1 26 0 0 0 chr4 64801230 64801256 -119487406 + AT_rich Low_complexity Low_complexity 1 26 0 2281 64 0 0 chr4 64801267 64801547 -119487115 + AluY SINE Alu 1 280 -31 198 0 0 0 chr4 64801550 64801572 -119487090 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 270 271 35 47 chr4 64802164 64802249 -119486413 + L2 LINE L2 3189 3272 0 571 238 64 30 chr4 64802283 64802436 -119486226 + MER3 DNA MER1_type 1 164 -45 189 0 0 0 chr4 64802436 64802457 -119486205 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 571 238 64 30 chr4 64802457 64802505 -119486157 + MER3 DNA MER1_type 164 209 0 931 208 27 36 chr4 64802974 64803195 -119485467 + MER20 DNA MER1_type 1 219 0 648 97 0 0 chr4 64803238 64803331 -119485331 + (TA)n Simple_repeat Simple_repeat 1 93 0 21 0 0 0 chr4 64806497 64806518 -119482144 + AT_rich Low_complexity Low_complexity 1 21 0 368 325 41 12 chr4 64807337 64807506 -119481156 - MIR SINE MIR -11 251 78 290 351 97 13 chr4 64808034 64808262 -119480400 + MIR SINE MIR 14 260 -2 873 184 6 0 chr4 64809016 64809179 -119479483 - L1PA14 LINE L1 -55 6106 5943 24 67 0 0 chr4 64810949 64810994 -119477668 + AT_rich Low_complexity Low_complexity 1 45 0 1403 140 5 0 chr4 64811562 64811783 -119476879 - AluSg/x SINE Alu 0 304 83 21 36 0 0 chr4 64812547 64812575 -119476087 + AT_rich Low_complexity Low_complexity 1 28 0 664 305 188 32 chr4 64813605 64814094 -119474568 + L2 LINE L2 2741 3313 0 846 201 12 12 chr4 64814211 64814375 -119474287 - FRAM SINE Alu -12 164 1 1071 293 12 18 chr4 64814639 64814973 -119473689 + L1MDa LINE L1 15 346 -6194 4865 226 46 31 chr4 64815272 64816967 -119471695 + L1MDa LINE L1 914 2639 -3901 698 128 0 0 chr4 64816967 64817069 -119471593 + U6 snRNA snRNA 1 102 -5 7647 172 40 3 chr4 64817074 64818568 -119470094 + L1PA11 LINE L1 2020 3569 -2577 6642 89 7 0 chr4 64818569 64818830 -119469832 + L1PA11 LINE L1 4731 4989 -1185 1872 104 4 0 chr4 64818830 64819128 -119469534 + AluSc SINE Alu 39 337 0 6642 89 7 0 chr4 64819128 64820312 -119468350 + L1PA11 LINE L1 4989 6171 -3 485 283 49 0 chr4 64820344 64820528 -119468134 + L1MDa LINE L1 2628 2820 -3720 1162 224 27 65 chr4 64820529 64820930 -119467732 + L1M4 LINE L1 4667 5052 -1094 253 274 69 24 chr4 64821064 64821210 -119467452 - MIR SINE MIR -62 146 17 2441 53 0 10 chr4 64821432 64821733 -119466929 + AluY SINE Alu 1 298 -13 250 353 33 8 chr4 64821816 64821938 -119466724 - L2 LINE L2 -31 3282 3158 392 292 33 62 chr4 64825241 64825481 -119463181 - L1ME4a LINE L1 -11 6110 5878 1319 256 27 12 chr4 64825675 64826011 -119462651 + MER58B DNA MER1_type 1 341 0 206 322 87 71 chr4 64826341 64826524 -119462138 - MIR SINE MIR -54 208 23 2263 103 0 0 chr4 64826978 64827269 -119461393 + AluSq SINE Alu 1 291 -22 2304 91 29 83 chr4 64827353 64827738 -119460924 + THE1B LTR MaLR 1 364 0 612 148 174 0 chr4 64827747 64827896 -119460766 + MER53 DNA DNA 3 177 -12 456 162 68 17 chr4 64829582 64829699 -119458963 - MER113 DNA MER1_type? -392 129 7 202 336 114 15 chr4 64830523 64830654 -119458008 - L2 LINE L2 -232 3040 2897 1903 173 73 16 chr4 64831734 64831937 -119456725 - MSTB1 LTR MaLR -28 404 214 188 0 74 0 chr4 64831937 64831964 -119456698 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1903 173 73 16 chr4 64831964 64832142 -119456520 - MSTB1 LTR MaLR -218 214 1 22 0 0 0 chr4 64832999 64833021 -119455641 + AT_rich Low_complexity Low_complexity 1 22 0 2285 94 0 0 chr4 64833515 64833828 -119454834 + AluSx SINE Alu 1 313 0 575 146 29 0 chr4 64834103 64834206 -119454456 - L1MB8 LINE L1 0 6178 6073 402 338 71 13 chr4 64834349 64834660 -119454002 - L2 LINE L2 -271 3042 2708 1801 177 0 0 chr4 64834661 64834955 -119453707 - AluJb SINE Alu -18 294 1 1903 280 74 36 chr4 64835292 64836045 -119452617 + L2 LINE L2 729 1510 -1804 227 45 0 114 chr4 64836408 64836452 -119452210 - L1MA9 LINE L1 0 6312 6274 1351 152 20 86 chr4 64836466 64836768 -119451894 + AluJo SINE Alu 9 290 -22 1123 139 24 14 chr4 64836768 64836977 -119451685 - L1MA9 LINE L1 -40 6272 6062 2042 129 0 0 chr4 64836992 64837295 -119451367 + AluSq SINE Alu 5 307 0 218 287 129 18 chr4 64837551 64837684 -119450978 + MIR SINE MIR 13 151 -66 238 257 9 62 chr4 64838290 64838403 -119450259 - MIR SINE MIR -50 212 106 262 378 18 0 chr4 64839132 64839243 -119449419 - MIR SINE MIR -125 137 25 24 67 0 0 chr4 64839313 64839358 -119449304 + AT_rich Low_complexity Low_complexity 1 45 0 745 144 28 31 chr4 64839876 64840057 -119448605 - L1MC/D LINE L1 -494 5680 5516 323 326 78 31 chr4 64840191 64840485 -119448177 - L2 LINE L2 -1363 1951 1644 294 266 0 0 chr4 64840550 64840629 -119448033 - MER116 DNA Mariner -1 79 1 21 0 0 0 chr4 64841222 64841243 -119447419 + AT_rich Low_complexity Low_complexity 1 21 0 275 414 57 9 chr4 64841338 64841669 -119446993 - L2 LINE L2 -2497 817 471 207 182 0 0 chr4 64842109 64842142 -119446520 + (TATATG)n Simple_repeat Simple_repeat 6 38 0 205 161 0 0 chr4 64842230 64842261 -119446401 + T-rich Low_complexity Low_complexity 2 32 0 183 300 0 20 chr4 64842917 64842967 -119445695 - L2 LINE L2 -36 3277 3229 197 59 59 0 chr4 64843689 64843723 -119444939 + A-rich Low_complexity Low_complexity 4 39 0 21 57 0 0 chr4 64843913 64843948 -119444714 + AT_rich Low_complexity Low_complexity 1 35 0 2128 84 105 8 chr4 64844029 64844395 -119444267 + LTR7 LTR ERV1 1 450 0 21146 115 9 17 chr4 64844395 64848109 -119440553 + HERVH LTR ERV1 1 3993 -3720 7835 138 16 2 chr4 64848092 64849315 -119439347 + HERVH LTR ERV1 3994 5286 -1805 * 2648 131 7 0 chr4 64849312 64849732 -119438930 + HERVH LTR ERV1 5594 6016 -1697 * 3873 84 7 14 chr4 64849725 64850285 -119438377 + HERVH LTR ERV1 7157 7712 -1 2142 97 204 0 chr4 64850286 64850658 -119438004 + LTR7 LTR ERV1 1 448 -2 1582 159 26 4 chr4 64850712 64850976 -119437686 + AluJb SINE Alu 24 293 -19 573 126 0 0 chr4 64853377 64853472 -119435190 - AluSg/x SINE Alu -1 311 217 495 230 185 14 chr4 64854126 64854348 -119434314 - L1ME4a LINE L1 -89 6032 5773 307 281 81 33 chr4 64854642 64854883 -119433779 - L1ME4a LINE L1 -747 5399 5175 1296 260 44 66 chr4 64856923 64857423 -119431239 - MLT1E2 LTR MaLR 0 626 136 873 173 115 31 chr4 64857429 64857620 -119431042 + MLT1A1 LTR MaLR 1 207 -158 3414 96 6 0 chr4 64857621 64858098 -119430564 + L1PA14 LINE L1 5627 6106 -55 2314 172 89 25 chr4 64858098 64858568 -119430094 - LTR22 LTR ERVK 0 509 10 300 148 0 0 chr4 64858575 64858629 -119430033 + L1PA14 LINE L1 6099 6152 -9 818 124 29 44 chr4 64858659 64858796 -119429866 + MLT1A1 LTR MaLR 231 365 0 305 214 17 111 chr4 64858802 64858919 -119429743 - MLT1E2 LTR MaLR -399 106 1 252 260 52 0 chr4 64858998 64859075 -119429587 - Charlie4 DNA MER1_type -1832 129 49 267 206 15 15 chr4 64859454 64859522 -119429140 + GA-rich Low_complexity Low_complexity 1 68 0 2096 140 16 0 chr4 64859844 64860151 -119428511 + AluSx SINE Alu 1 312 0 1978 124 4 0 chr4 64861822 64862097 -119426565 - AluSx SINE Alu -16 296 21 515 301 68 6 chr4 64863650 64863826 -119424836 + MIR3 SINE MIR 16 202 -6 22 0 0 0 chr4 64864779 64864801 -119423861 + AT_rich Low_complexity Low_complexity 1 22 0 895 283 24 4 chr4 64865592 64865839 -119422823 - MIR SINE MIR 0 262 11 284 207 0 0 chr4 64865931 64865989 -119422673 - MIR SINE MIR -4 258 201 440 300 42 0 chr4 64867673 64867793 -119420869 + MIR SINE MIR 12 136 -126 688 341 52 30 chr4 64867799 64867930 -119420732 - L2 LINE L2 0 3272 3145 180 0 0 0 chr4 64867930 64867950 -119420712 + (CAA)n Simple_repeat Simple_repeat 2 21 0 688 341 52 30 chr4 64867950 64868556 -119420106 - L2 LINE L2 -127 3145 2521 8096 188 41 40 chr4 64868556 64870074 -119418588 + L1MA7 LINE L1 3416 4938 -1240 2183 127 7 0 chr4 64870074 64870373 -119418289 + AluSx SINE Alu 1 301 -11 8096 188 41 40 chr4 64870373 64870872 -119417790 + L1MA7 LINE L1 4938 5435 -743 2787 120 24 67 chr4 64870877 64871461 -119417201 + L1MA7 LINE L1 5731 6289 -2 384 265 14 54 chr4 64871625 64871772 -119416890 - L2 LINE L2 -72 3241 3101 416 265 56 36 chr4 64871865 64872061 -119416601 - L2 LINE L2 -2411 903 704 197 309 0 12 chr4 64872202 64872283 -119416379 + MIR SINE MIR 183 262 0 203 357 93 0 chr4 64872878 64873007 -119415655 - MIR3 SINE MIR -48 160 20 2420 75 0 28 chr4 64873317 64873635 -119415027 + AluY SINE Alu 1 309 -2 21 36 0 0 chr4 64874979 64875007 -119413655 + AT_rich Low_complexity Low_complexity 1 28 0 2108 126 0 13 chr4 64876454 64876764 -119411898 - AluSc SINE Alu -3 306 1 2192 121 3 10 chr4 64877258 64877572 -119411090 - AluSx SINE Alu 0 312 1 25 75 0 0 chr4 64878173 64878226 -119410436 + AT_rich Low_complexity Low_complexity 1 53 0 2167 120 7 10 chr4 64878922 64879223 -119409439 + AluSg SINE Alu 1 300 -10 232 321 60 60 chr4 64879496 64879630 -119409032 - MIR3 SINE MIR -67 141 8 2361 77 3 0 chr4 64879743 64880041 -119408621 + AluY SINE Alu 1 299 -12 653 312 83 21 chr4 64880137 64880464 -119408198 + L2 LINE L2 1591 1937 -1377 25 0 0 0 chr4 64881448 64881473 -119407189 + AT_rich Low_complexity Low_complexity 1 25 0 248 253 72 12 chr4 64882229 64882312 -119406350 - MIR SINE MIR -128 134 47 27 49 0 0 chr4 64882769 64882810 -119405852 + AT_rich Low_complexity Low_complexity 1 41 0 25 65 0 0 chr4 64882877 64882923 -119405739 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr4 64883289 64883310 -119405352 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 64884101 64884122 -119404540 + AT_rich Low_complexity Low_complexity 1 21 0 309 349 93 12 chr4 64885012 64885184 -119403478 + MIR SINE MIR 31 216 -46 489 80 0 0 chr4 64885288 64885363 -119403299 + (TA)n Simple_repeat Simple_repeat 2 76 0 851 288 93 81 chr4 64886011 64886355 -119402307 + MLT1J2 LTR MaLR 19 366 -43 202 244 13 13 chr4 64886507 64886585 -119402077 + GA-rich Low_complexity Low_complexity 3 80 0 26 0 0 0 chr4 64887165 64887191 -119401471 + AT_rich Low_complexity Low_complexity 1 26 0 348 274 49 0 chr4 64887384 64887486 -119401176 + MIR SINE MIR 132 238 -24 882 157 7 0 chr4 64887928 64888068 -119400594 + AluJo SINE Alu 1 141 -171 32 26 0 0 chr4 64888085 64888124 -119400538 + AT_rich Low_complexity Low_complexity 1 39 0 219 336 69 77 chr4 64888252 64888526 -119400136 + L2 LINE L2 2466 2737 -577 219 88 0 0 chr4 64888597 64888631 -119400031 + (TC)n Simple_repeat Simple_repeat 1 34 0 2345 94 3 0 chr4 64888826 64889134 -119399528 + AluY SINE Alu 1 309 -2 201 39 0 0 chr4 64891130 64891156 -119397506 + (CCCTG)n Simple_repeat Simple_repeat 3 28 0 411 346 71 74 chr4 64891315 64891708 -119396954 + L2 LINE L2 2881 3272 0 2924 9 0 0 chr4 64892176 64892494 -119396168 + AluYb8 SINE Alu 1 318 0 425 300 104 23 chr4 64892543 64892763 -119395899 - MIR SINE MIR -2 260 23 933 300 66 32 chr4 64893820 64894257 -119394405 + LTR16A1 LTR ERVL 1 452 -5 24 32 0 0 chr4 64895049 64895080 -119393582 + AT_rich Low_complexity Low_complexity 1 31 0 8936 260 44 37 chr4 64895407 64898152 -119390510 + L1PA13 LINE L1 1 2726 -4071 201 39 0 0 chr4 64898152 64898178 -119390484 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 6533 12 0 0 chr4 64898179 64898917 -119389745 - L1PA2 LINE L1 -1 6154 5417 8936 260 44 37 chr4 64898917 64901143 -119387519 + L1PA13 LINE L1 2725 4981 -1816 213 39 0 0 chr4 64901143 64901169 -119387493 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 3079 28 0 0 chr4 64901169 64901527 -119387135 - L1PA3 LINE L1 -13 6142 5785 5267 36 0 0 chr4 64901527 64902173 -119386489 + L1P LINE L1 2185 2830 -3316 1542 226 24 26 chr4 64902169 64902584 -119386078 + L1 LINE L1 4317 4730 -1416 * 366 287 153 10 chr4 64902583 64902792 -119385870 + HAL1 LINE L1 1555 1793 -714 * 354 278 46 0 chr4 64903773 64903881 -119384781 - MIR SINE MIR -33 229 117 589 319 137 27 chr4 64904489 64905125 -119383537 + L2 LINE L2 1766 2471 -843 507 17 0 0 chr4 64905183 64905243 -119383419 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 2075 116 7 3 chr4 64905243 64905528 -119383134 - AluSx SINE Alu -26 286 1 26 88 0 0 chr4 64905562 64905630 -119383032 + AT_rich Low_complexity Low_complexity 1 68 0 318 311 84 18 chr4 64906592 64906759 -119381903 - MIR SINE MIR 0 262 85 7778 15 0 0 chr4 64906760 64908044 -119380618 + L1PA3 LINE L1 4908 6191 0 200 114 63 25 chr4 64908576 64908655 -119380007 + (TA)n Simple_repeat Simple_repeat 1 82 0 1010 277 72 27 chr4 64908691 64909061 -119379601 + L1ME3A LINE L1 5213 5565 -605 2250 113 0 0 chr4 64909061 64909362 -119379300 + AluSg SINE Alu 1 301 -9 1010 277 72 27 chr4 64909362 64909688 -119378974 + L1ME3A LINE L1 5565 5939 -231 232 179 26 0 chr4 64910004 64910043 -119378619 + MER90 LTR ERV1 536 575 0 1815 213 79 27 chr4 64910612 64911092 -119377570 - MLT1D LTR MaLR 0 505 1 1979 161 0 0 chr4 64911468 64911767 -119376895 + AluSx SINE Alu 1 299 -13 235 346 39 24 chr4 65112512 65112639 -119176023 - MIR SINE MIR -86 176 48 1212 203 45 14 chr4 65112650 65112838 -119175824 + MER69 DNA AcHobo 2102 2283 -243 1679 182 21 0 chr4 65112838 65113129 -119175533 + AluJb SINE Alu 1 297 -15 1212 203 45 14 chr4 65113129 65113294 -119175368 + MER69 DNA AcHobo 2283 2466 -60 842 283 85 53 chr4 65114052 65114430 -119174232 + L2 LINE L2 2924 3313 0 183 297 0 47 chr4 65114620 65114684 -119173978 + L2 LINE L2 3251 3311 -2 243 146 0 0 chr4 65115217 65115258 -119173404 + (TA)n Simple_repeat Simple_repeat 2 42 0 247 180 49 16 chr4 65116362 65116423 -119172239 - L2 LINE L2 0 3272 3210 189 0 0 0 chr4 65116588 65116609 -119172053 + (A)n Simple_repeat Simple_repeat 1 21 0 373 254 87 0 chr4 65116880 65117018 -119171644 - MER103 DNA DNA -6 160 11 22 35 0 0 chr4 65117156 65117185 -119171477 + AT_rich Low_complexity Low_complexity 1 29 0 2153 132 0 3 chr4 65117185 65117489 -119171173 - AluSx SINE Alu -9 303 1 762 170 20 7 chr4 65117525 65117672 -119170990 - L1M2 LINE L1 -704 5608 5460 1932 146 3 32 chr4 65117672 65117987 -119170675 + AluJo SINE Alu 1 306 -6 1436 198 28 90 chr4 65118113 65118578 -119170084 - MER67D LTR ERV1 -78 436 1 306 224 0 0 chr4 65118890 65118948 -119169714 - AluS SINE Alu -240 62 5 37 69 0 0 chr4 65119134 65119206 -119169456 + AT_rich Low_complexity Low_complexity 1 72 0 442 92 0 0 chr4 65119304 65119369 -119169293 - AluSc SINE Alu -9 300 236 1325 128 0 11 chr4 65119471 65119651 -119169011 + AluSg/x SINE Alu 117 294 -18 466 168 11 0 chr4 65119651 65119746 -119168916 + Charlie5 DNA MER1_type 2489 2584 -28 2255 255 60 36 chr4 65120038 65120834 -119167828 + MER69 DNA AcHobo 1 815 -411 666 219 57 94 chr4 65120916 65121322 -119167340 + Charlie1b DNA MER1_type 7 397 -126 320 241 28 28 chr4 65121319 65121427 -119167235 - Charlie2 DNA MER1_type -861 2001 1894 * 248 333 20 0 chr4 65121446 65121544 -119167118 - Charlie2 DNA MER1_type -2458 324 225 7286 108 27 46 chr4 65121544 65122168 -119166494 + HSMAR2 DNA Mariner 2 637 -665 7373 40 14 0 chr4 65122168 65123211 -119165451 - L1PA5 LINE L1 0 6154 5110 7286 108 27 46 chr4 65123211 65123780 -119164882 + HSMAR2 DNA Mariner 637 1216 -86 2164 125 7 0 chr4 65123780 65124075 -119164587 - AluSx SINE Alu -12 300 4 7286 108 27 46 chr4 65124075 65124111 -119164551 + HSMAR2 DNA Mariner 1216 1210 -92 1472 141 23 11 chr4 65124111 65124374 -119164288 - L1MA5A LINE L1 0 6297 6032 7286 108 27 46 chr4 65124374 65124417 -119164245 + HSMAR2 DNA Mariner 1209 1251 -51 339 25 0 0 chr4 65124457 65124497 -119164165 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1593 110 118 4 chr4 65124499 65124736 -119163926 - AluSg SINE Alu -30 280 17 824 125 125 0 chr4 65124736 65124864 -119163798 - AluSg SINE Alu -166 144 1 225 122 0 0 chr4 65124873 65124914 -119163748 + HSMAR2 DNA Mariner 1261 1301 -1 594 197 166 10 chr4 65124914 65125107 -119163555 - Charlie2 DNA MER1_type -2554 228 6 1816 170 0 23 chr4 65125342 65125642 -119163020 - AluJb SINE Alu -16 296 4 202 286 0 0 chr4 65125654 65125710 -119162952 - MIR SINE MIR -109 153 98 1189 224 37 4 chr4 65125723 65125964 -119162698 - AluJo SINE Alu -25 287 39 942 145 0 0 chr4 65127592 65127730 -119160932 + AluJo SINE Alu 1 138 -174 2110 129 3 0 chr4 65127736 65128031 -119160631 + AluSx SINE Alu 1 296 -16 354 282 27 18 chr4 65128986 65129096 -119159566 - MER5A DNA MER1_type -78 111 1 198 0 0 0 chr4 65129300 65129322 -119159340 + (TG)n Simple_repeat Simple_repeat 1 22 0 299 318 97 20 chr4 65129410 65129605 -119159057 + MIR SINE MIR 49 258 -4 2108 121 0 3 chr4 65130886 65131175 -119157487 - AluSg SINE Alu -22 288 1 875 234 44 13 chr4 65132300 65132526 -119156136 - MIR SINE MIR -2 260 28 775 247 106 40 chr4 65133148 65133618 -119155044 + L1ME4a LINE L1 5616 6116 -5 1851 155 7 16 chr4 65133745 65134054 -119154608 - AluJb SINE Alu -6 306 1 440 194 10 10 chr4 65135895 65135993 -119152669 + MER69 DNA AcHobo 1 98 -1128 557 219 33 0 chr4 65135998 65136149 -119152513 + MER69 DNA AcHobo 2349 2504 -22 309 239 140 18 chr4 65137441 65137546 -119151116 - MIR SINE MIR -47 161 50 1049 122 0 27 chr4 65137745 65137892 -119150770 + AluSq/x SINE Alu 1 143 -170 249 289 26 0 chr4 65138178 65138254 -119150408 - L1MC4 LINE L1 -370 7672 7595 26 0 0 0 chr4 65138297 65138323 -119150339 + AT_rich Low_complexity Low_complexity 1 26 0 452 319 41 30 chr4 65138472 65138641 -119150021 + MIR SINE MIR 26 196 -66 32 0 0 0 chr4 65139120 65139152 -119149510 + AT_rich Low_complexity Low_complexity 1 32 0 30653 103 8 56 chr4 65139156 65145588 -119143074 - L1PA7 LINE L1 -29 6125 13 476 244 25 8 chr4 65145662 65145781 -119142881 - MLT1A1 LTR MaLR -74 291 171 294 95 0 0 chr4 65146535 65146577 -119142085 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 1541 184 32 4 chr4 65146577 65146854 -119141808 - AluJo SINE Alu -26 286 2 195 42 0 0 chr4 65147295 65147319 -119141343 + (TC)n Simple_repeat Simple_repeat 1 24 0 1529 203 7 7 chr4 65147319 65147614 -119141048 - AluJo SINE Alu -17 295 1 1585 274 20 29 chr4 65148267 65148819 -119139843 + L1M2 LINE L1 10 556 -6293 1407 167 0 18 chr4 65149141 65149369 -119139293 + AluSx SINE Alu 1 224 -88 225 0 0 0 chr4 65149388 65149413 -119139249 + (A)n Simple_repeat Simple_repeat 1 25 0 192 241 17 17 chr4 65149413 65149471 -119139191 + MIR3 SINE MIR 138 195 -13 193 98 49 0 chr4 65149471 65149512 -119139150 + (TA)n Simple_repeat Simple_repeat 1 43 0 969 265 63 79 chr4 65149532 65149651 -119139011 + L2 LINE L2 2653 2772 -541 2149 138 6 3 chr4 65149651 65149962 -119138700 - AluSx SINE Alu 0 312 1 969 265 63 79 chr4 65149962 65150515 -119138147 + L2 LINE L2 2772 3312 -1 288 0 0 0 chr4 65151112 65151144 -119137518 + (CA)n Simple_repeat Simple_repeat 2 33 0 23 86 0 0 chr4 65151257 65151315 -119137347 + AT_rich Low_complexity Low_complexity 1 58 0 34 24 0 0 chr4 65151330 65151371 -119137291 + AT_rich Low_complexity Low_complexity 1 41 0 430 291 8 8 chr4 65151383 65151500 -119137162 + L2 LINE L2 3197 3313 0 333 343 170 18 chr4 65152846 65153129 -119135533 - L1MC4a LINE L1 -1888 5920 5595 285 313 96 17 chr4 65154410 65154525 -119134137 - L2 LINE L2 -6 3307 3184 441 0 0 0 chr4 65154628 65154677 -119133985 + (TA)n Simple_repeat Simple_repeat 2 50 0 229 338 32 45 chr4 65155985 65156142 -119132520 + L2 LINE L2 2932 3086 -186 1664 156 33 30 chr4 65156712 65157014 -119131648 - AluJb SINE Alu -9 303 1 1993 212 126 27 chr4 65158031 65158691 -119129971 + MER50 LTR ERV1 10 734 0 1309 195 50 27 chr4 65158718 65158979 -119129683 - AluJo SINE Alu -45 267 1 1215 211 4 0 chr4 65159244 65159472 -119129190 + Tigger7 DNA MER2_type 2 230 -475 559 198 0 9 chr4 65159485 65159596 -119129066 + Tigger7 DNA MER2_type 2378 2487 0 270 246 14 14 chr4 65160391 65160460 -119128202 - L2 LINE L2 0 3313 3245 421 280 110 115 chr4 65160492 65161303 -119127359 - L2 LINE L2 -1150 2164 1358 1741 281 124 64 chr4 65161563 65162369 -119126293 + L2 LINE L2 1332 2229 -1085 2448 80 0 3 chr4 65162369 65162671 -119125991 - AluSx SINE Alu -11 301 1 1741 281 124 64 chr4 65162671 65163010 -119125652 + L2 LINE L2 2229 2546 -768 925 215 35 12 chr4 65163072 65163284 -119125378 - MER20 DNA MER1_type -5 214 1 456 325 134 21 chr4 65164293 65164384 -119124278 - L1M4 LINE L1 -3373 2773 2694 3277 47 0 0 chr4 65164384 65164787 -119123875 - L1PA3 LINE L1 -3 6152 5750 456 325 134 21 chr4 65164787 65165165 -119123497 - L1M4 LINE L1 -3452 2694 2251 590 270 105 61 chr4 65165639 65166497 -119122165 - L1M4 LINE L1 -2145 4001 3106 1449 187 32 28 chr4 65166530 65166813 -119121849 - AluJo SINE Alu -28 284 1 593 250 97 81 chr4 65166822 65167228 -119121434 - HAL1 LINE L1 -30 2477 2060 1676 148 66 44 chr4 65167228 65167593 -119121069 + THE1C LTR MaLR 1 373 -2 593 250 97 81 chr4 65167593 65167670 -119120992 - HAL1 LINE L1 -447 2060 1986 1597 136 0 4 chr4 65167759 65168009 -119120653 + THE1C-int LTR MaLR 1 249 -1402 21 0 0 0 chr4 65168320 65168341 -119120321 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 65168927 65168949 -119119713 + AT_rich Low_complexity Low_complexity 1 22 0 198 226 48 0 chr4 65168960 65169022 -119119640 + MIR SINE MIR 100 164 -98 258 155 99 0 chr4 65169035 65169106 -119119556 - MER69 DNA AcHobo -15 2511 2434 243 246 18 0 chr4 65169090 65169147 -119119515 - MER69 DNA AcHobo -2387 139 82 * 9389 181 9 19 chr4 65169226 65170893 -119117769 + L1M1 LINE L1 15 1665 -5900 5833 158 10 18 chr4 65170892 65172433 -119116229 + L1M1 LINE L1 2758 4289 -3276 * 10728 189 25 10 chr4 65172438 65174415 -119114247 + L1MA2 LINE L1 17 2027 -5538 1991 164 39 25 chr4 65174415 65174774 -119113888 + THE1B LTR MaLR 1 364 0 10728 189 25 10 chr4 65174774 65174801 -119113861 + L1MA2 LINE L1 2027 2052 -5513 723 146 8 8 chr4 65174792 65174922 -119113740 + L1MA2 LINE L1 4996 5125 -2440 * 6444 137 20 2 chr4 65174918 65176327 -119112335 + L1MA2 LINE L1 6290 7723 0 576 333 53 0 chr4 65176615 65176839 -119111823 - MIR SINE MIR -6 256 17 1683 226 69 12 chr4 65177267 65177687 -119110975 + MLT1C LTR MaLR 1 444 -23 994 177 44 25 chr4 65178358 65178620 -119110042 - MER33 DNA MER1_type -59 265 1 2674 203 97 7 chr4 65178695 65180001 -119108661 + L1MC2 LINE L1 4478 5907 -437 1383 156 80 34 chr4 65180007 65180270 -119108392 + AluJo SINE Alu 14 288 -24 241 135 0 0 chr4 65180270 65180307 -119108355 + Alu SINE Alu 83 119 -183 2071 142 28 86 chr4 65180307 65180772 -119107890 + L1MC2 LINE L1 5906 6343 -1 272 207 0 37 chr4 65181825 65181907 -119106755 + (TA)n Simple_repeat Simple_repeat 2 80 0 250 212 51 95 chr4 65181942 65182079 -119106583 - L1MEd LINE L1 -5094 1025 895 2108 128 10 0 chr4 65182131 65182429 -119106233 + AluSx SINE Alu 1 301 -11 260 337 30 10 chr4 65182634 65182735 -119105927 - L1MEd LINE L1 -5493 626 524 1462 141 95 3 chr4 65183634 65183917 -119104745 - L1MA8 LINE L1 -6 6285 5977 2046 120 3 41 chr4 65184053 65184369 -119104293 + AluSx SINE Alu 1 304 -8 351 224 129 57 chr4 65184371 65184634 -119104028 - L1ME4a LINE L1 -84 6037 5756 15603 116 12 17 chr4 65184656 65185065 -119103597 + L1P3 LINE L1 1 410 -6051 207 0 0 0 chr4 65185065 65185088 -119103574 + (TTG)n Simple_repeat Simple_repeat 2 24 0 15603 116 12 17 chr4 65185088 65188209 -119100453 + L1P3 LINE L1 410 3536 -2925 4677 79 15 8 chr4 65188201 65188857 -119099805 + L1P3 LINE L1 4106 4766 -1695 * 872 173 46 6 chr4 65188857 65189030 -119099632 - LTR3b LTR ERVK 0 500 321 541 121 17 112 chr4 65189030 65189146 -119099516 - HERVK3 LTR ERVK -659 5286 3058 4754 213 37 2 chr4 65189175 65190131 -119098531 - HERVK3 LTR ERVK -4934 2309 1321 322 320 19 0 chr4 65190119 65190222 -119098440 - HERVK3 LTR ERVK -6563 680 576 * 583 206 82 96 chr4 65190274 65190493 -119098169 - HERVK3 LTR ERVK -6971 272 57 1797 151 71 12 chr4 65190757 65191081 -119097581 - LTR3b LTR ERVK 0 500 158 7133 46 6 0 chr4 65191091 65192794 -119095868 + L1PA7 LINE L1 4445 6154 0 2436 77 0 3 chr4 65194050 65194362 -119094300 + AluY SINE Alu 1 311 0 277 300 36 36 chr4 65194757 65194897 -119093765 + MIR SINE MIR 69 208 -54 465 82 0 0 chr4 65195018 65195079 -119093583 + Alu SINE Alu 233 293 -17 335 222 25 0 chr4 65195353 65195434 -119093228 - L1MD3 LINE L1 -10 7985 7903 188 241 111 0 chr4 65195435 65195489 -119093173 - L2 LINE L2 -61 3252 3193 348 253 147 32 chr4 65195916 65196011 -119092651 - L2 LINE L2 0 3272 3167 1094 277 84 7 chr4 65197015 65197444 -119091218 + MER20B DNA MER1_type 29 490 -293 1546 145 4 0 chr4 65197496 65197724 -119090938 + AluSq SINE Alu 67 295 -18 243 367 9 0 chr4 65198891 65199000 -119089662 + MARNA DNA Mariner 135 244 -342 301 185 46 0 chr4 65199384 65199449 -119089213 + MER3 DNA MER1_type 141 208 -1 299 369 60 12 chr4 65199565 65199733 -119088929 + MER5A DNA MER1_type 7 182 -7 2613 33 0 3 chr4 65200073 65200380 -119088282 - AluY SINE Alu -5 306 1 22 70 0 0 chr4 65200474 65200517 -119088145 + AT_rich Low_complexity Low_complexity 1 43 0 29 28 0 0 chr4 65200614 65200650 -119088012 + AT_rich Low_complexity Low_complexity 1 36 0 2149 136 3 0 chr4 65200668 65200977 -119087685 + AluSx SINE Alu 1 310 -2 269 316 103 44 chr4 65201742 65201878 -119086784 - L2 LINE L2 -1413 1901 1758 330 360 50 46 chr4 65201919 65202158 -119086504 - L2 LINE L2 -566 2748 2509 838 163 0 28 chr4 65203016 65203157 -119085505 - FLAM_C SINE Alu -6 137 1 371 315 62 17 chr4 65203199 65203377 -119085285 - MIR SINE MIR -27 235 50 1358 174 51 98 chr4 65203831 65204280 -119084382 - MLT1E1 LTR MaLR 0 654 227 326 140 18 18 chr4 65204281 65204338 -119084324 - MLT1E1 LTR MaLR -597 57 1 507 239 9 9 chr4 65205206 65205315 -119083347 + MLT1J1 LTR MaLR 31 139 -307 3078 75 12 2 chr4 65205345 65205745 -119082917 + MLT2A1 LTR ERVL 1 404 -40 317 322 0 0 chr4 65205745 65205835 -119082827 + L1MC4 LINE L1 6614 6703 -1339 329 85 0 0 chr4 65205841 65205888 -119082774 + MLT2A1 LTR ERVL 391 437 -7 241 286 14 0 chr4 65206091 65206161 -119082501 + (GAATG)n Simple_repeat Simple_repeat 3 73 0 22 0 0 0 chr4 65206261 65206283 -119082379 + AT_rich Low_complexity Low_complexity 1 22 0 340 324 144 18 chr4 65206287 65206620 -119082042 - L2 LINE L2 -2245 1069 695 5419 158 20 23 chr4 65206620 65208015 -119080647 + L1PA16 LINE L1 4785 6166 0 911 275 113 22 chr4 65208670 65209084 -119079578 - LTR50 LTR ERVL 0 795 344 740 293 26 8 chr4 65209125 65209391 -119079271 - ERVL LTR ERVL -517 5247 4977 842 299 25 7 chr4 65209499 65209773 -119078889 - ERVL LTR ERVL -969 4795 4517 431 372 35 0 chr4 65210544 65210743 -119077919 - MIR SINE MIR -56 206 1 365 264 115 19 chr4 65210750 65210958 -119077704 + MER112 DNA MER1_type 5 232 -28 457 321 21 21 chr4 65211096 65211283 -119077379 + MIR SINE MIR 74 260 -2 225 229 0 0 chr4 65211934 65211982 -119076680 - MER5B DNA MER1_type 0 178 131 1868 183 0 0 chr4 65211995 65212328 -119076334 + L1PA15 LINE L1 5833 6165 0 27 0 0 0 chr4 65212333 65212360 -119076302 + AT_rich Low_complexity Low_complexity 1 27 0 515 256 24 0 chr4 65212368 65212493 -119076169 - MER5B DNA MER1_type -50 128 1 243 346 88 15 chr4 65215290 65215426 -119073236 + MER5A DNA MER1_type 37 182 -7 292 328 42 26 chr4 65216468 65216660 -119072002 + MER117 DNA MER1_type 2 196 -1 213 214 29 14 chr4 65216755 65216825 -119071837 + A-rich Low_complexity Low_complexity 1 71 0 422 260 77 77 chr4 65216929 65217110 -119071552 - MER5A DNA MER1_type 0 189 9 1120 254 162 30 chr4 65217289 65217785 -119070877 - L2 LINE L2 -4 3309 2750 860 195 115 5 chr4 65218036 65218236 -119070426 - MER58A DNA MER1_type 0 224 3 430 325 58 5 chr4 65218361 65218552 -119070110 - MIR SINE MIR -10 252 52 * 1170 272 345 29 chr4 65218550 65219590 -119069072 + L2 LINE L2 1462 2830 -484 231 196 0 18 chr4 65219596 65219652 -119069010 + L1PB4 LINE L1 6098 6152 -4 21 0 0 0 chr4 65219652 65219673 -119068989 + AT_rich Low_complexity Low_complexity 1 21 0 278 343 70 14 chr4 65219786 65219929 -119068733 - MIR SINE MIR 0 262 112 288 242 42 63 chr4 65220551 65220584 -119068078 - L2 LINE L2 0 3272 3240 1641 189 0 14 chr4 65220584 65220880 -119067782 + AluJo SINE Alu 1 292 -20 288 242 42 63 chr4 65220880 65220941 -119067721 - L2 LINE L2 -32 3240 3180 220 243 100 43 chr4 65223629 65223699 -119064963 - MIR SINE MIR -95 113 40 2319 104 0 0 chr4 65223837 65224136 -119064526 - AluSc SINE Alu -10 299 1 261 0 0 0 chr4 65224578 65224607 -119064055 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2087 119 3 26 chr4 65224614 65224924 -119063738 + AluSg SINE Alu 1 303 -7 1751 150 65 141 chr4 65225551 65226103 -119062559 + MER67D LTR ERV1 1 510 -4 627 309 28 39 chr4 65226315 65226597 -119062065 + L1MEd LINE L1 84 362 -5757 599 249 72 26 chr4 65227052 65227245 -119061417 - MIR SINE MIR 0 262 61 579 164 9 0 chr4 65227820 65227930 -119060732 + L1PA16 LINE L1 6056 6166 0 343 261 81 31 chr4 65227936 65228097 -119060565 - L1ME3A LINE L1 -43 6127 5959 306 319 58 49 chr4 65228097 65228323 -119060339 + L2 LINE L2 2258 2485 -829 186 238 127 32 chr4 65228449 65228512 -119060150 - L3b LINE CR1 -226 1357 1289 1263 272 99 26 chr4 65228527 65228983 -119059679 - L2 LINE L2 -415 2899 2411 845 204 44 14 chr4 65228990 65229277 -119059385 - MLT1A2 LTR MaLR -4 370 2 3487 283 130 82 chr4 65229278 65229903 -119058759 - L2 LINE L2 -894 2420 1827 688 67 0 0 chr4 65229903 65229993 -119058669 - L1P LINE L1 -1931 4215 4126 9715 30 1 0 chr4 65229996 65231926 -119056736 + L1PA4 LINE L1 4221 6152 -3 3487 283 130 82 chr4 65231926 65232413 -119056249 - L2 LINE L2 -1488 1826 1364 2015 102 14 24 chr4 65232413 65232707 -119055955 + AluSx SINE Alu 4 294 -18 3487 283 130 82 chr4 65232707 65233786 -119054876 - L2 LINE L2 -1950 1364 25 210 337 10 41 chr4 65234218 65234316 -119054346 + L2 LINE L2 3219 3313 0 196 299 187 28 chr4 65234346 65234453 -119054209 + L2 LINE L2 3182 3305 -8 21 0 0 0 chr4 65235835 65235856 -119052806 + AT_rich Low_complexity Low_complexity 1 21 0 1090 109 17 0 chr4 65236817 65236992 -119051670 + L1M1 LINE L1 5261 5438 -864 233 295 0 74 chr4 65239414 65239509 -119049153 - MIR SINE MIR -17 245 158 209 287 181 21 chr4 65239856 65239950 -119048712 - L2 LINE L2 -6 3307 3199 1737 161 0 30 chr4 65239963 65240268 -119048394 + AluJb SINE Alu 1 296 -16 1422 178 20 41 chr4 65241037 65241330 -119047332 + AluJb SINE Alu 1 287 -25 355 116 0 29 chr4 65241337 65241406 -119047256 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 544 306 303 9 chr4 65241464 65241807 -119046855 - L2 LINE L2 -458 2856 2615 2325 109 0 0 chr4 65241807 65242111 -119046551 + AluSx SINE Alu 1 304 -8 544 306 303 9 chr4 65242111 65242302 -119046360 - L2 LINE L2 -699 2615 2165 368 328 49 27 chr4 65242765 65242941 -119045721 + MIR SINE MIR 14 192 -64 1885 91 0 0 chr4 65243380 65243621 -119045041 + AluSg/x SINE Alu 66 306 -6 2032 127 7 3 chr4 65243938 65244238 -119044424 + AluSx SINE Alu 1 301 -11 489 286 38 0 chr4 65244500 65244633 -119044029 + MIR SINE MIR 97 234 -28 22 0 0 0 chr4 65244646 65244668 -119043994 + AT_rich Low_complexity Low_complexity 1 22 0 369 302 85 0 chr4 65245107 65245213 -119043449 - L2 LINE L2 0 3272 3158 427 280 64 0 chr4 65245282 65245407 -119043255 - MIR3 SINE MIR -48 160 28 443 276 141 0 chr4 65245892 65246048 -119042614 + MIR3 SINE MIR 28 205 -3 450 340 86 48 chr4 65246447 65246864 -119041798 + L3 LINE CR1 1101 1533 -44 189 330 43 17 chr4 65247494 65247609 -119041053 + L2 LINE L2 1848 1965 -1349 335 319 97 54 chr4 65248048 65248440 -119040222 + L1M2 LINE L1 717 1125 -5724 21 0 0 0 chr4 65249221 65249242 -119039420 + AT_rich Low_complexity Low_complexity 1 21 0 270 313 50 20 chr4 65249878 65249977 -119038685 + MIR SINE MIR 43 144 -64 579 349 33 14 chr4 65250131 65250406 -119038256 + LTR16B LTR ERVL 132 411 -53 1147 158 23 22 chr4 65250860 65251197 -119037465 + MLT2A2 LTR ERVL 214 451 -2 1677 274 45 34 chr4 65251586 65251943 -119036719 + L1MC4a LINE L1 5317 5686 -2122 222 37 0 0 chr4 65251943 65251970 -119036692 + (TA)n Simple_repeat Simple_repeat 1 27 0 1677 274 45 34 chr4 65251970 65252258 -119036404 + L1MC4a LINE L1 5686 5969 -1839 206 109 16 47 chr4 65252270 65252334 -119036328 + (TA)n Simple_repeat Simple_repeat 1 62 0 2229 223 36 47 chr4 65252334 65252886 -119035776 - MLT2B3 LTR ERVL -8 546 1 7079 146 25 60 chr4 65252886 65253206 -119035456 - ERVL-B3 LTR ERVL -7 5757 5427 273 119 0 0 chr4 65253206 65253248 -119035414 + (TA)n Simple_repeat Simple_repeat 2 43 0 7079 146 25 60 chr4 65253248 65254288 -119034374 - ERVL-B3 LTR ERVL -337 5427 4444 785 142 31 0 chr4 65254288 65254415 -119034247 + MER61D LTR ERV1 371 501 0 321 209 0 0 chr4 65254416 65254483 -119034179 - MLT2B3 LTR ERVL -487 67 1 1405 174 84 142 chr4 65254690 65255203 -119033459 - MLT1D LTR MaLR 0 505 23 416 298 50 0 chr4 65255328 65255469 -119033193 + L2 LINE L2 2876 3023 -290 477 249 58 46 chr4 65255469 65255673 -119032989 - MLT1J2 LTR MaLR -238 208 1 2080 70 0 0 chr4 65256129 65256400 -119032262 + L1PA7 LINE L1 5884 6154 0 224 304 0 38 chr4 65256873 65256952 -119031710 + L2 LINE L2 3237 3312 -1 285 336 67 50 chr4 65257862 65258100 -119030562 + LTR16A LTR ERVL 20 261 -189 2135 124 0 7 chr4 65258239 65258546 -119030116 + AluSg SINE Alu 1 305 -5 848 97 8 0 chr4 65258546 65258670 -119029992 - LTR26 LTR ERV1 -471 132 8 344 242 242 6 chr4 65258797 65258954 -119029708 - Charlie7 DNA MER1_type -2412 200 7 1475 196 0 67 chr4 65259732 65260044 -119028618 + AluJb SINE Alu 1 291 -21 27 0 0 0 chr4 65260044 65260071 -119028591 + AT_rich Low_complexity Low_complexity 1 27 0 2068 200 37 24 chr4 65261105 65261566 -119027096 - MLT1C LTR MaLR 0 467 1 236 323 121 8 chr4 65261987 65262111 -119026551 - L2 LINE L2 -955 2359 2222 180 0 0 0 chr4 65262276 65262296 -119026366 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 25 31 0 0 chr4 65262600 65262632 -119026030 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 65263023 65263044 -119025618 + AT_rich Low_complexity Low_complexity 1 21 0 293 315 138 30 chr4 65263254 65263328 -119025334 + L2 LINE L2 2827 2892 -380 2077 100 28 3 chr4 65263328 65263617 -119025045 - AluSc SINE Alu -13 296 1 293 315 138 30 chr4 65263617 65263745 -119024917 + L2 LINE L2 2892 3051 -221 366 347 13 20 chr4 65264026 65264176 -119024486 + L2 LINE L2 3123 3271 -1 381 162 0 0 chr4 65264177 65264245 -119024417 + (TGGA)n Simple_repeat Simple_repeat 2 69 0 2198 111 7 0 chr4 65264797 65265094 -119023568 + AluSx SINE Alu 1 299 -13 4459 151 25 27 chr4 65266045 65267529 -119021133 + L1PB1 LINE L1 4514 5985 -166 2184 166 35 31 chr4 65267529 65268078 -119020584 - MLT2A2 LTR ERVL 0 554 1 1131 119 6 0 chr4 65268078 65268246 -119020416 + L1PB1 LINE L1 5981 6149 -2 327 128 9 0 chr4 65268611 65268669 -119019993 + Alu SINE Alu 1 43 -265 24 67 0 0 chr4 65269650 65269695 -119018967 + AT_rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chr4 65270447 65270475 -119018187 + AT_rich Low_complexity Low_complexity 1 28 0 282 324 66 7 chr4 65270667 65270803 -119017859 - MIR SINE MIR -109 153 10 390 250 78 31 chr4 65270890 65271018 -119017644 - MIR SINE MIR -24 238 105 231 185 0 31 chr4 65271063 65271128 -119017534 + T-rich Low_complexity Low_complexity 2 64 0 351 44 0 0 chr4 65271935 65271980 -119016682 + (TG)n Simple_repeat Simple_repeat 2 46 0 329 213 11 43 chr4 65272495 65272589 -119016073 - MIR SINE MIR -5 257 167 2012 151 0 6 chr4 65274164 65274476 -119014186 + AluSg SINE Alu 1 310 0 211 176 0 0 chr4 65274624 65274658 -119014004 + (CTG)n Simple_repeat Simple_repeat 2 35 0 907 306 28 4 chr4 65274667 65274922 -119013740 - MIR SINE MIR 0 262 2 249 260 68 0 chr4 65275672 65275745 -119012917 + L2 LINE L2 3232 3309 -4 249 306 32 0 chr4 65275991 65276053 -119012609 - MIR SINE MIR -151 111 48 205 88 29 0 chr4 65276197 65276231 -119012431 + (TA)n Simple_repeat Simple_repeat 1 35 0 2243 117 3 0 chr4 65276312 65276621 -119012041 + AluSq SINE Alu 1 310 -3 25 0 0 0 chr4 65276708 65276733 -119011929 + AT_rich Low_complexity Low_complexity 1 25 0 906 183 30 6 chr4 65278229 65278393 -119010269 + L1M1 LINE L1 478 645 -6920 189 276 213 50 chr4 65278504 65278964 -119009698 - L2 LINE L2 -1737 1577 1043 421 285 80 48 chr4 65279274 65279523 -119009139 - MIR SINE MIR -3 259 3 229 307 40 30 chr4 65281270 65281371 -119007291 + LTR33 LTR ERVL 40 141 -380 370 107 0 0 chr4 65281409 65281465 -119007197 - Tigger3(Golem) DNA MER2_type -271 2758 2703 377 123 0 0 chr4 65281716 65281773 -119006889 + Tigger3(Golem) DNA MER2_type 2702 2758 -271 891 216 0 0 chr4 65282194 65282384 -119006278 + L1P LINE L1 4785 4974 -1172 862 181 5 58 chr4 65282443 65282480 -119006182 + AluJo SINE Alu 105 142 -170 2327 51 0 45 chr4 65282480 65282793 -119005869 + AluY SINE Alu 1 299 -12 862 181 5 58 chr4 65282793 65282943 -119005719 + AluJo SINE Alu 142 282 -30 22 0 0 0 chr4 65283464 65283486 -119005176 + AT_rich Low_complexity Low_complexity 1 22 0 355 289 0 0 chr4 65283891 65283981 -119004681 + L1MC4 LINE L1 6614 6703 -1339 317 322 0 0 chr4 65283901 65283991 -119004671 - L1MC4 LINE L1 -1339 6703 6614 * 231 193 0 18 chr4 65284016 65284073 -119004589 + L1MCa LINE L1 2006 2061 -4365 * 243 256 47 0 chr4 65284067 65284153 -119004509 - L1MC4 LINE L1 -1339 6703 6614 239 284 0 0 chr4 65284101 65284189 -119004473 + L1MC4 LINE L1 6614 6701 -1341 * 257 196 0 0 chr4 65284213 65284269 -119004393 + L1MC4 LINE L1 6648 6703 -1339 360 200 0 0 chr4 65284269 65284344 -119004318 + (TA)n Simple_repeat Simple_repeat 1 75 0 9382 135 52 27 chr4 65284344 65284520 -119004142 - Tigger1 DNA MER2_type -727 1691 1521 2433 59 0 50 chr4 65284520 65284842 -119003820 - AluY SINE Alu -5 306 1 9382 135 52 27 chr4 65284842 65285834 -119002828 - Tigger1 DNA MER2_type -897 1521 469 2300 89 0 0 chr4 65285834 65286127 -119002535 - AluSg SINE Alu -17 293 1 9382 135 52 27 chr4 65286127 65286608 -119002054 - Tigger1 DNA MER2_type -1949 469 1 2014 94 0 0 chr4 65286645 65286899 -119001763 - AluSg SINE Alu -13 297 44 291 353 0 42 chr4 65287031 65287150 -119001512 - MIR SINE MIR -128 134 21 1599 88 9 0 chr4 65287271 65287497 -119001165 + L1PA10 LINE L1 5939 6166 -2 43916 44 1 0 chr4 65288996 65295147 -118993515 - L1PA4 LINE L1 0 6155 1 3539 125 0 4 chr4 65296058 65296571 -118992091 + MER9 LTR ERVK 1 511 0 2021 150 132 5 chr4 65297391 65297771 -118990891 + MSTA LTR MaLR 1 428 0 747 107 0 0 chr4 65298444 65298547 -118990115 + MSTA LTR MaLR 1 103 -325 6046 109 9 0 chr4 65298772 65298980 -118989682 + L1PA14 LINE L1 4529 4734 -1427 2033 189 55 32 chr4 65298980 65299455 -118989207 + MER66B LTR ERV1 1 486 0 6046 109 9 0 chr4 65299455 65300850 -118987812 + L1PA14 LINE L1 4734 6159 -2 531 316 92 19 chr4 65301035 65301405 -118987257 - L1 LINE L1 -2963 3183 2787 238 269 0 115 chr4 65302397 65302501 -118986161 - L2 LINE L2 -8 3305 3214 36174 95 16 9 chr4 65302836 65308941 -118979721 - L1PA5 LINE L1 -3 6151 11 2098 110 4 4 chr4 65309517 65309845 -118978817 - AluSx SINE Alu 0 328 1 625 289 158 27 chr4 65309985 65310586 -118978076 - L2 LINE L2 0 3313 2628 25 51 0 0 chr4 65310658 65310697 -118977965 + AT_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chr4 65311280 65311316 -118977346 + AT_rich Low_complexity Low_complexity 1 36 0 202 291 0 38 chr4 65311477 65311556 -118977106 + L2 LINE L2 3164 3239 -33 889 226 40 1 chr4 65311567 65311823 -118976839 + L1MA4 LINE L1 6030 6289 -11 205 310 0 23 chr4 65311837 65311924 -118976738 + GA-rich Low_complexity Low_complexity 4 88 0 211 319 14 14 chr4 65312211 65312280 -118976382 - L2 LINE L2 -55 3217 3149 632 269 87 54 chr4 65313404 65313702 -118974960 - MER115 DNA AcHobo -177 516 209 1624 101 0 0 chr4 65315858 65316067 -118972595 + AluSx SINE Alu 1 209 -103 2438 88 0 0 chr4 65316219 65316526 -118972136 - AluSg1 SINE Alu -2 307 1 463 221 147 61 chr4 65316960 65317191 -118971471 + MER20B DNA MER1_type 515 765 -18 289 350 93 7 chr4 65317417 65317557 -118971105 + L2 LINE L2 3161 3312 -1 343 350 100 7 chr4 65317629 65317769 -118970893 + L2 LINE L2 3119 3271 -1 446 103 0 0 chr4 65318217 65318285 -118970377 - MER41A LTR ERV1 -88 466 399 339 273 234 5 chr4 65318294 65318499 -118970163 - L1ME4a LINE L1 -9 6112 5861 399 169 14 0 chr4 65318525 65318594 -118970068 - Charlie1b DNA MER1_type -4 519 450 1507 196 16 35 chr4 65318594 65318908 -118969754 + LTR22 LTR ERVK 1 308 -272 338 61 20 0 chr4 65318908 65318957 -118969705 + Alu SINE Alu 1 50 -252 1576 167 23 0 chr4 65318957 65319221 -118969441 + LTR22 LTR ERVK 311 580 0 2153 78 44 10 chr4 65319283 65319577 -118969085 - AluSx SINE Alu -8 304 1 1147 169 29 46 chr4 65319581 65319888 -118968774 - Charlie1b DNA MER1_type -131 392 91 779 193 69 0 chr4 65319888 65320033 -118968629 - Tigger2 DNA MER2_type 0 2718 2564 728 147 8 0 chr4 65320032 65320161 -118968501 - Tigger2 DNA MER2_type -2508 210 81 * 2805 98 12 12 chr4 65320162 65320579 -118968083 - L1PA14 LINE L1 -5 7594 7178 19453 165 20 6 chr4 65320679 65323496 -118965166 - L1PA14 LINE L1 -419 7180 4402 2677 52 0 0 chr4 65323496 65323805 -118964857 - AluY SINE Alu -2 309 1 19453 165 20 6 chr4 65323805 65327789 -118960873 - L1PA14 LINE L1 -3197 4402 1 486 174 0 0 chr4 65327794 65327880 -118960782 - Tigger2 DNA MER2_type -2631 87 2 412 261 23 0 chr4 65327881 65327969 -118960693 - Charlie1b DNA MER1_type -431 92 3 22 80 0 0 chr4 65328289 65328339 -118960323 + AT_rich Low_complexity Low_complexity 1 50 0 1803 181 125 44 chr4 65328378 65328859 -118959803 + MLT2B1 LTR ERVL 1 520 0 2159 119 0 22 chr4 65328868 65329187 -118959475 + AluSx SINE Alu 1 312 0 192 40 0 0 chr4 65329432 65329457 -118959205 + (T)n Simple_repeat Simple_repeat 1 25 0 394 250 58 8 chr4 65330218 65330338 -118958324 - MER102b DNA MER1_type -10 331 206 269 247 26 0 chr4 65330388 65330465 -118958197 + MIR SINE MIR 184 262 0 487 306 78 31 chr4 65331259 65331499 -118957163 + MIR SINE MIR 3 250 -12 267 232 263 0 chr4 65331738 65331833 -118956829 - L2 LINE L2 -2 3270 3151 459 270 109 43 chr4 65332216 65332427 -118956235 + MIR SINE MIR 12 236 -26 210 71 0 0 chr4 65332753 65332781 -118955881 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 * 369 0 0 0 chr4 65332780 65332821 -118955841 + (TG)n Simple_repeat Simple_repeat 2 42 0 1916 123 0 0 chr4 65332825 65333085 -118955577 - AluSq SINE Alu -53 260 1 1739 185 0 13 chr4 65333643 65333946 -118954716 + AluSx SINE Alu 1 299 -13 6278 81 16 19 chr4 65334064 65335438 -118953224 + L1PA13 LINE L1 4393 5766 -397 1862 156 28 0 chr4 65335438 65335726 -118952936 + AluSx SINE Alu 1 296 -16 6278 81 16 19 chr4 65335726 65336119 -118952543 + L1PA13 LINE L1 5766 6158 -5 186 247 0 135 chr4 65336855 65336944 -118951718 - L2 LINE L2 -189 3083 3007 2122 114 3 20 chr4 65337337 65337643 -118951019 + AluSx SINE Alu 1 301 -11 9019 144 15 23 chr4 65337765 65340522 -118948140 + L1MA1 LINE L1 3555 6298 -4 23 33 0 0 chr4 65340524 65340554 -118948108 + AT_rich Low_complexity Low_complexity 1 30 0 634 259 151 0 chr4 65340683 65340868 -118947794 + MIR SINE MIR 5 217 -45 26 30 0 0 chr4 65340868 65340901 -118947761 + AT_rich Low_complexity Low_complexity 1 33 0 212 170 19 0 chr4 65341072 65341125 -118947537 + (TA)n Simple_repeat Simple_repeat 1 54 0 433 221 63 134 chr4 65341543 65341796 -118946866 - MER102a DNA MER1_type -9 321 87 2014 122 6 29 chr4 65343281 65343592 -118945070 + AluSq SINE Alu 1 304 -9 184 151 19 19 chr4 65343995 65344048 -118944614 + A-rich Low_complexity Low_complexity 4 56 0 194 289 70 35 chr4 65345218 65345332 -118943330 - L2 LINE L2 -331 2941 2824 196 51 26 26 chr4 65345811 65345850 -118942812 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 24 53 0 0 chr4 65346143 65346181 -118942481 + AT_rich Low_complexity Low_complexity 1 38 0 221 245 10 0 chr4 65346365 65346467 -118942195 + (TA)n Simple_repeat Simple_repeat 1 103 0 21 0 0 0 chr4 65346570 65346591 -118942071 + AT_rich Low_complexity Low_complexity 1 21 0 2196 118 16 0 chr4 65347654 65347959 -118940703 + AluSx SINE Alu 1 310 -2 1966 204 29 78 chr4 65349359 65349937 -118938725 + MLT2B3 LTR ERVL 5 554 0 246 154 77 31 chr4 65350144 65350209 -118938453 + LTR67 LTR ERVL 478 545 -12 1569 242 28 14 chr4 65350385 65350745 -118937917 + MLT1A1 LTR MaLR 1 365 0 694 118 0 0 chr4 65351443 65351536 -118937126 + HERVL LTR ERVL 5269 5361 -293 26 30 0 0 chr4 65351582 65351615 -118937047 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr4 65351725 65351749 -118936913 + AT_rich Low_complexity Low_complexity 1 24 0 241 200 0 0 chr4 65351918 65351963 -118936699 + MIR SINE MIR 218 262 0 22 0 0 0 chr4 65352712 65352734 -118935928 + AT_rich Low_complexity Low_complexity 1 22 0 1524 161 0 85 chr4 65352952 65353268 -118935394 - AluJo SINE Alu -23 289 1 246 62 0 0 chr4 65353827 65353859 -118934803 + (A)n Simple_repeat Simple_repeat 1 32 0 3057 183 56 12 chr4 65354114 65354791 -118933871 - L1MB3 LINE L1 -1 6182 5476 4055 148 4 11 chr4 65354802 65355510 -118933152 - L1MA5A LINE L1 -12 6285 5583 21 0 0 0 chr4 65356412 65356433 -118932229 + AT_rich Low_complexity Low_complexity 1 21 0 2256 106 0 3 chr4 65356723 65357025 -118931637 - AluSg SINE Alu -9 301 1 364 325 175 0 chr4 65357187 65357341 -118931321 + MER5A DNA MER1_type 9 189 0 322 298 230 11 chr4 65357650 65357841 -118930821 - MIR SINE MIR -25 237 5 4232 121 107 116 chr4 65357970 65359391 -118929271 + pTR5 LTR ERV1 741 2438 0 1634 178 14 3 chr4 65359873 65360160 -118928502 - AluSx SINE Alu -22 290 1 340 278 37 0 chr4 65360303 65360411 -118928251 - MER94 DNA DNA -12 122 11 234 0 0 0 chr4 65360806 65360832 -118927830 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 681 195 0 0 chr4 65360837 65360955 -118927707 - FLAM_C SINE Alu -25 118 1 216 97 0 0 chr4 65361331 65361362 -118927300 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 14959 43 4 3 chr4 65361417 65364069 -118924593 - L1PA5 LINE L1 0 6154 3501 24 32 0 0 chr4 65364640 65364671 -118923991 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr4 65368932 65368954 -118919708 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr4 65369489 65369527 -118919135 + AT_rich Low_complexity Low_complexity 1 38 0 1355 200 49 39 chr4 65369529 65369814 -118918848 + AluJb SINE Alu 3 290 -22 24 0 0 0 chr4 65370458 65370482 -118918180 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr4 65371479 65371505 -118917157 + AT_rich Low_complexity Low_complexity 1 26 0 22 56 0 0 chr4 65372205 65372241 -118916421 + AT_rich Low_complexity Low_complexity 1 36 0 26 74 0 0 chr4 65372347 65372401 -118916261 + AT_rich Low_complexity Low_complexity 1 54 0 344 100 0 0 chr4 65372565 65372615 -118916047 - MADE1 DNA Mariner -1 79 30 520 80 67 0 chr4 65372620 65372695 -118915967 - MADE1 DNA Mariner 0 80 1 21 36 0 0 chr4 65372903 65372931 -118915731 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr4 65374330 65374355 -118914307 + AT_rich Low_complexity Low_complexity 1 25 0 351 0 0 0 chr4 65374382 65374421 -118914241 + (CA)n Simple_repeat Simple_repeat 1 39 0 345 297 201 27 chr4 65374694 65374913 -118913749 + MIR SINE MIR 6 262 0 229 174 22 0 chr4 65375214 65375260 -118913402 + MIR3 SINE MIR 124 170 -38 23 54 0 0 chr4 65375412 65375449 -118913213 + AT_rich Low_complexity Low_complexity 1 37 0 247 274 14 41 chr4 65376203 65376276 -118912386 + L2 LINE L2 3202 3272 0 23 0 0 0 chr4 65376485 65376508 -118912154 + AT_rich Low_complexity Low_complexity 1 23 0 271 349 47 9 chr4 65376971 65377077 -118911585 + MIR SINE MIR 54 163 -99 369 0 0 0 chr4 65377434 65377475 -118911187 + (TTA)n Simple_repeat Simple_repeat 1 41 0 1695 148 4 4 chr4 65377475 65377739 -118910923 - AluSx SINE Alu -32 280 17 1739 216 50 11 chr4 65377872 65378251 -118910411 - MSTD LTR MaLR 0 396 3 207 133 0 0 chr4 65378260 65378305 -118910357 + (TC)n Simple_repeat Simple_repeat 2 46 0 251 327 45 49 chr4 65381064 65381287 -118907375 - MERVL LTR ERVL -1790 3695 3474 339 316 99 33 chr4 65381930 65382142 -118906520 - MERVL LTR ERVL -3337 2427 2202 1307 167 123 12 chr4 65382176 65382465 -118906197 + AluSg1 SINE Alu 1 317 0 281 312 16 40 chr4 65383435 65383560 -118905102 - Charlie8 DNA MER1_type -2215 202 81 1653 172 83 27 chr4 65383974 65384311 -118904351 + MLT1A1 LTR MaLR 10 365 0 369 346 78 29 chr4 65384433 65384676 -118903986 - MLT1K LTR MaLR -7 581 327 438 223 214 15 chr4 65384874 65385080 -118903582 + MER114 LTR ERV 400 646 -2 958 238 26 66 chr4 65385124 65385426 -118903236 - MLT1C LTR MaLR 0 467 178 1331 188 17 0 chr4 65385437 65385676 -118902986 - AluJb SINE Alu -12 300 58 2602 173 19 6 chr4 65385843 65386322 -118902340 + MER31A LTR ERV1 1 485 0 702 260 114 3 chr4 65386458 65386819 -118901843 - L1M4 LINE L1 -823 5323 4923 240 330 119 36 chr4 65387362 65387556 -118901106 - L2 LINE L2 -615 2699 2490 1523 254 108 24 chr4 65387561 65387990 -118900672 - MLT1C LTR MaLR 0 467 6 1314 333 99 29 chr4 65387997 65388903 -118899759 - L2 LINE L2 -833 2481 1512 372 300 15 0 chr4 65389239 65389369 -118899293 + MER94 DNA DNA 2 133 -1 21 0 0 0 chr4 65389738 65389759 -118898903 + AT_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr4 65390775 65390805 -118897857 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 399 221 29 48 chr4 65391114 65391218 -118897444 + MER5B DNA MER1_type 76 177 -1 1745 38 0 0 chr4 65391223 65391435 -118897227 + L1PA4 LINE L1 5941 6152 -3 24 67 0 0 chr4 65393110 65393155 -118895507 + AT_rich Low_complexity Low_complexity 1 45 0 249 296 64 64 chr4 65393826 65394046 -118894616 + L2 LINE L2 3049 3268 -4 21 82 0 0 chr4 65394641 65394690 -118893972 + AT_rich Low_complexity Low_complexity 1 49 0 208 180 20 0 chr4 65394739 65394789 -118893873 + (TTA)n Simple_repeat Simple_repeat 3 53 0 13297 37 1 1 chr4 65395629 65398013 -118890649 + L1PA4 LINE L1 3765 6147 -8 423 228 37 59 chr4 65398050 65398186 -118890476 - L2 LINE L2 0 3313 3181 24 0 0 0 chr4 65399031 65399055 -118889607 + AT_rich Low_complexity Low_complexity 1 24 0 336 48 0 0 chr4 65399680 65399722 -118888940 + (TA)n Simple_repeat Simple_repeat 1 42 0 457 307 116 23 chr4 65400737 65400952 -118887710 - MIR SINE MIR -14 248 14 21 0 0 0 chr4 65400986 65401007 -118887655 + AT_rich Low_complexity Low_complexity 1 21 0 225 393 9 9 chr4 65401089 65401196 -118887466 - L2 LINE L2 -220 3052 2946 1752 201 22 17 chr4 65402466 65402869 -118885793 + L1MA9 LINE L1 5873 6277 -35 2267 59 38 0 chr4 65404970 65405258 -118883404 + AluY SINE Alu 2 300 -11 1245 33 0 0 chr4 65405282 65405433 -118883229 + L1PA5 LINE L1 6002 6152 -2 336 167 0 0 chr4 65406307 65406361 -118882301 - MER20 DNA MER1_type 0 219 166 398 176 0 0 chr4 65406365 65406433 -118882229 + Tigger1 DNA MER2_type 2351 2418 0 14499 238 16 18 chr4 65406468 65409889 -118878773 - L1PA15 LINE L1 0 7603 4176 2106 197 26 2 chr4 65409889 65410306 -118878356 - MSTA LTR MaLR -1 427 1 14499 238 16 18 chr4 65410306 65410763 -118877899 - L1PA15 LINE L1 -3427 4176 3719 207 0 0 0 chr4 65410763 65410786 -118877876 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 14499 238 16 18 chr4 65410786 65411064 -118877598 - L1PA15 LINE L1 -3884 3719 3442 198 0 0 0 chr4 65411064 65411086 -118877576 + (TG)n Simple_repeat Simple_repeat 1 22 0 14499 238 16 18 chr4 65411086 65413340 -118875322 - L1PA15 LINE L1 -4161 3442 1209 518 217 48 24 chr4 65413357 65413523 -118875139 - MER20 DNA MER1_type -39 180 11 934 342 101 21 chr4 65413649 65414231 -118874431 + L2 LINE L2 861 1489 -1825 3951 172 21 3 chr4 65414287 65415031 -118873631 - L1MA5 LINE L1 -4 6296 5539 1166 88 6 0 chr4 65415031 65415190 -118873472 + MER41A LTR ERV1 6 165 -389 * 1337 83 0 0 chr4 65415187 65415368 -118873294 + MER41B LTR ERV1 455 635 0 957 160 76 27 chr4 65415368 65415590 -118873072 - L1MA5 LINE L1 -750 5396 5308 766 264 29 25 chr4 65415892 65416134 -118872528 + MER58B DNA MER1_type 84 326 -15 25 0 0 0 chr4 65416836 65416861 -118871801 + AT_rich Low_complexity Low_complexity 1 25 0 305 289 10 48 chr4 65416908 65417012 -118871650 - L2 LINE L2 0 3313 3214 3147 158 54 8 chr4 65417714 65418298 -118870364 - MER4D LTR ERV1 -7 896 286 959 191 6 0 chr4 65418298 65418471 -118870191 + LTR18B LTR ERVL 3 176 -438 608 224 76 33 chr4 65418611 65418821 -118869841 + LTR18B LTR ERVL 383 601 -13 1614 130 23 43 chr4 65418822 65419122 -118869540 - MER4D LTR ERV1 -609 294 1 2420 87 0 0 chr4 65419633 65419944 -118868718 - AluY SINE Alu 0 311 1 2805 166 93 32 chr4 65420097 65420842 -118867820 - LTR1B LTR ERV1 0 785 1 453 248 65 26 chr4 65421055 65421208 -118867454 - MER5A DNA MER1_type -4 185 27 21 0 0 0 chr4 65421345 65421366 -118867296 + AT_rich Low_complexity Low_complexity 1 21 0 1697 219 61 73 chr4 65422586 65423147 -118865515 - MLT2B3 LTR ERVL 0 554 1 208 333 14 0 chr4 65424174 65424246 -118864416 + MER5A DNA MER1_type 9 81 -108 512 311 130 49 chr4 65425554 65425962 -118862700 - L2 LINE L2 -1 3312 2872 233 374 37 20 chr4 65426983 65427277 -118861385 + L2 LINE L2 1990 2288 -1026 201 221 0 0 chr4 65427557 65427625 -118861037 + GA-rich Low_complexity Low_complexity 3 70 0 249 290 0 0 chr4 65428246 65428308 -118860354 + A-rich Low_complexity Low_complexity 4 65 0 1249 233 3 23 chr4 65428383 65428684 -118859978 + AluJo SINE Alu 1 295 -7 845 158 0 7 chr4 65429041 65429180 -118859482 - FLAM_C SINE Alu -5 138 1 448 276 39 33 chr4 65429183 65429364 -118859298 - MER5A DNA MER1_type -7 182 1 21 0 0 0 chr4 65429651 65429672 -118858990 + AT_rich Low_complexity Low_complexity 1 21 0 2311 90 0 31 chr4 65431193 65431516 -118857146 - AluSp SINE Alu 0 313 1 206 260 41 55 chr4 65433277 65433350 -118855312 + MIR SINE MIR 60 131 -77 21 0 0 0 chr4 65433524 65433545 -118855117 + AT_rich Low_complexity Low_complexity 1 21 0 315 346 24 0 chr4 65435452 65435580 -118853082 + MIR SINE MIR 28 161 -74 200 333 21 32 chr4 65435715 65435808 -118852854 + MER5A DNA MER1_type 8 99 -90 744 314 169 25 chr4 65437097 65437629 -118851033 - L2 LINE L2 -5 3308 2692 21 0 0 0 chr4 65437716 65437737 -118850925 + AT_rich Low_complexity Low_complexity 1 21 0 192 125 0 0 chr4 65438061 65438093 -118850569 + (TAA)n Simple_repeat Simple_repeat 2 33 0 217 104 15 60 chr4 65438394 65438461 -118850201 + (TA)n Simple_repeat Simple_repeat 2 65 0 240 237 0 17 chr4 65439749 65439808 -118848854 + GA-rich Low_complexity Low_complexity 3 60 0 512 257 56 34 chr4 65440186 65440365 -118848297 - MER5A DNA MER1_type -6 183 1 23 68 0 0 chr4 65440788 65440832 -118847830 + AT_rich Low_complexity Low_complexity 1 44 0 405 321 23 56 chr4 65441379 65441594 -118847068 + MIR SINE MIR 15 222 -40 351 297 40 0 chr4 65441656 65441757 -118846905 + MER5A DNA MER1_type 8 112 -77 21 0 0 0 chr4 65442194 65442215 -118846447 + AT_rich Low_complexity Low_complexity 1 21 0 1378 234 42 47 chr4 65443000 65443401 -118845261 - MER92A LTR ERV1 -13 399 1 13636 182 29 13 chr4 65444081 65444440 -118844222 - L1PB1 LINE L1 0 6867 6515 462 101 0 0 chr4 65444440 65444509 -118844153 + (TA)n Simple_repeat Simple_repeat 2 70 0 13636 182 29 13 chr4 65444509 65448093 -118840569 - L1PB1 LINE L1 -352 6515 2802 1864 140 7 4 chr4 65448093 65448407 -118840255 - AluSc SINE Alu 0 317 3 13636 182 29 13 chr4 65448407 65449668 -118838994 - L1PB1 LINE L1 -4065 2802 1563 * 33906 45 30 2 chr4 65449667 65453947 -118834715 - L1P LINE L1 -1743 4403 1 1709 200 102 58 chr4 65454228 65454709 -118833953 - MLT1D LTR MaLR -3 502 1 189 345 69 35 chr4 65454799 65454915 -118833747 + L3 LINE CR1 1454 1573 -4 7579 28 0 1 chr4 65455636 65456891 -118831771 + L1PA4 LINE L1 4930 6152 -3 911 309 131 17 chr4 65457674 65458209 -118830453 - L2 LINE L2 -5 3308 2697 30 93 0 0 chr4 65458940 65459026 -118829636 + AT_rich Low_complexity Low_complexity 1 86 0 267 232 0 0 chr4 65459675 65459757 -118828905 + GA-rich Low_complexity Low_complexity 1 82 0 1206 225 10 27 chr4 65460513 65460806 -118827856 + AluJo SINE Alu 6 293 -19 23 0 0 0 chr4 65461170 65461193 -118827469 + AT_rich Low_complexity Low_complexity 1 23 0 1185 153 43 0 chr4 65461339 65461548 -118827114 - L1PA8 LINE L1 -1 6171 5954 414 312 26 13 chr4 65461624 65461778 -118826884 - MER5A DNA MER1_type -6 183 28 29 0 0 0 chr4 65463159 65463188 -118825474 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr4 65463811 65463840 -118824822 + AT_rich Low_complexity Low_complexity 1 29 0 1043 218 0 55 chr4 65464627 65464898 -118823764 + AluJo SINE Alu 14 269 -43 210 279 13 51 chr4 65465570 65465649 -118823013 + MIR SINE MIR 60 135 -73 3023 139 2 0 chr4 65467687 65468183 -118820479 - L1PA8A LINE L1 -1299 4847 4351 5681 100 20 1 chr4 65468183 65469419 -118819243 + L1PA8A LINE L1 4848 6103 -28 182 31 0 62 chr4 65469425 65469457 -118819205 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 251 262 104 92 chr4 65469489 65469653 -118819009 + MIR SINE MIR 17 182 -80 214 339 0 0 chr4 65469760 65469819 -118818843 + MER5A DNA MER1_type 8 66 -123 9589 62 5 105 chr4 65471196 65472731 -118815931 + SVA Other Other 5 1386 0 591 250 18 15 chr4 65472764 65473003 -118815659 - L1 LINE L1 -2767 3379 3144 5311 231 2 1 chr4 65473004 65474015 -118814647 - L1PA15-16 LINE L1 -5837 1012 1 4105 92 30 7 chr4 65474064 65474654 -118814008 - L1PA7 LINE L1 -1 6153 5550 8454 167 25 28 chr4 65474667 65476311 -118812351 - L1P LINE L1 -4497 1649 11 2163 136 56 5 chr4 65476323 65476699 -118811963 - MER4E-int LTR ERV1 -3936 2822 2428 1202 158 21 55 chr4 65476700 65477029 -118811633 - MER4E-int LTR ERV1 -4606 2152 1835 * 2504 182 18 7 chr4 65477026 65477481 -118811181 - MER4E-int LTR ERV1 -6060 698 239 1822 133 11 14 chr4 65477524 65477810 -118810852 - MER4E-int LTR ERV1 -6473 285 1 1304 130 4 30 chr4 65477810 65478040 -118810622 - MER4E LTR ERV1 0 766 543 433 253 11 86 chr4 65479673 65479750 -118808912 + MIR SINE MIR 14 72 -190 2104 147 31 3 chr4 65479750 65480104 -118808558 - THE1B LTR MaLR 0 364 1 433 253 11 86 chr4 65480104 65480200 -118808462 + MIR SINE MIR 72 174 -88 188 321 57 0 chr4 65480904 65480957 -118807705 - L2 LINE L2 -8 3305 3250 306 0 0 0 chr4 65481647 65481681 -118806981 + (TTA)n Simple_repeat Simple_repeat 3 36 0 1950 47 0 0 chr4 65481681 65481917 -118806745 - L1PA4 LINE L1 -18 6137 5902 298 200 0 30 chr4 65481941 65482041 -118806621 + GA-rich Low_complexity Low_complexity 3 99 0 211 213 0 21 chr4 65482625 65482672 -118805990 + GA-rich Low_complexity Low_complexity 3 48 0 1127 215 15 23 chr4 65482754 65483014 -118805648 + AluJo SINE Alu 6 263 -49 210 71 0 0 chr4 65483320 65483348 -118805314 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1281 103 41 0 chr4 65483350 65483545 -118805117 - L1PA8 LINE L1 -12 6160 5958 430 298 32 32 chr4 65483620 65483808 -118804854 - MER5A DNA MER1_type -1 188 1 1096 97 0 0 chr4 65485036 65485191 -118803471 - L1PA8 LINE L1 -1 6171 6017 24 53 0 0 chr4 65485455 65485493 -118803169 + AT_rich Low_complexity Low_complexity 1 38 0 1104 187 3 88 chr4 65486940 65487234 -118801428 + AluJo SINE Alu 1 269 -43 204 282 13 39 chr4 65487915 65487993 -118800669 + MIR SINE MIR 60 135 -73 234 91 0 0 chr4 65488003 65488036 -118800626 + (TCC)n Simple_repeat Simple_repeat 3 35 0 29 0 0 0 chr4 65488542 65488571 -118800091 + AT_rich Low_complexity Low_complexity 1 29 0 3211 117 4 0 chr4 65490019 65490516 -118798146 - L1PA8A LINE L1 -1297 4849 4351 5840 98 12 1 chr4 65490516 65491775 -118796887 + L1PA8A LINE L1 4848 6118 -13 195 42 0 0 chr4 65491780 65491804 -118796858 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 213 286 22 44 chr4 65491878 65491969 -118796693 + MIR SINE MIR 86 174 -88 571 332 140 9 chr4 65493506 65493834 -118794828 - L2 LINE L2 -7 3306 2936 5491 228 29 17 chr4 65493845 65494802 -118793860 - L1 LINE L1 -1481 4665 3680 306 67 0 0 chr4 65494802 65494847 -118793815 + (TG)n Simple_repeat Simple_repeat 2 46 0 5491 228 29 17 chr4 65494847 65495419 -118793243 - L1 LINE L1 -2466 3680 3117 1977 121 14 0 chr4 65495432 65495593 -118793069 - AluSq SINE Alu -27 286 118 243 0 0 0 chr4 65495593 65495620 -118793042 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 1977 121 14 0 chr4 65495620 65495740 -118792922 - AluSq SINE Alu -195 118 1 10240 126 31 13 chr4 65495741 65497390 -118791272 - MER4B-int LTR ERV1 -2651 4107 2429 1323 140 6 62 chr4 65497393 65497729 -118790933 - MER4B-int LTR ERV1 -4607 2151 1835 * 2813 156 15 4 chr4 65497726 65498182 -118790480 - MER4B-int LTR ERV1 -6060 698 238 926 44 0 0 chr4 65498264 65498377 -118790285 + AluSp/q SINE Alu 187 299 -14 1692 114 12 12 chr4 65498377 65498632 -118790030 - MER4B-int LTR ERV1 -6503 255 1 2820 143 44 37 chr4 65498632 65499233 -118789429 - MER4B LTR ERV1 0 779 1 2109 294 83 29 chr4 65499430 65500519 -118788143 - L1MEc LINE L1 -5213 1183 36 833 315 104 20 chr4 65500519 65501026 -118787636 + L2 LINE L2 2765 3308 -5 26 50 0 0 chr4 65501054 65501094 -118787568 + AT_rich Low_complexity Low_complexity 1 40 0 24 32 0 0 chr4 65501864 65501895 -118786767 + AT_rich Low_complexity Low_complexity 1 31 0 207 313 113 17 chr4 65501985 65502100 -118786562 + MIR SINE MIR 121 246 -16 353 319 42 30 chr4 65502765 65502931 -118785731 - MIR3 SINE MIR -25 183 16 189 147 0 0 chr4 65503992 65504026 -118784636 + (TA)n Simple_repeat Simple_repeat 2 35 0 22 94 0 0 chr4 65505543 65505607 -118783055 + AT_rich Low_complexity Low_complexity 1 64 0 26 93 0 0 chr4 65506304 65506379 -118782283 + AT_rich Low_complexity Low_complexity 1 75 0 459 225 25 33 chr4 65506500 65506620 -118782042 - L2 LINE L2 0 3313 3195 21 0 0 0 chr4 65506879 65506900 -118781762 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr4 65506941 65506973 -118781689 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 65507238 65507259 -118781403 + AT_rich Low_complexity Low_complexity 1 21 0 688 269 11 0 chr4 65507600 65507786 -118780876 + MER5A DNA MER1_type 1 188 -1 21 0 0 0 chr4 65508417 65508438 -118780224 + AT_rich Low_complexity Low_complexity 1 21 0 754 202 0 0 chr4 65508811 65508940 -118779722 + FLAM_C SINE Alu 1 129 -4 255 235 88 39 chr4 65509170 65509272 -118779390 + MIR SINE MIR 100 206 -56 7681 25 0 0 chr4 65510005 65511392 -118777270 - L1PA3 LINE L1 -3 6152 4766 8109 75 0 8 chr4 65511392 65512460 -118776202 + L1P LINE L1 97 1156 -4990 36 62 0 0 chr4 65513063 65513127 -118775535 + AT_rich Low_complexity Low_complexity 1 64 0 293 138 6 6 chr4 65513151 65513215 -118775447 - Alu SINE Alu -259 42 1 268 253 44 22 chr4 65513548 65513639 -118775023 + MER102b DNA MER1_type 233 325 -16 685 34 23 0 chr4 65513824 65513912 -118774750 - L1PA4 LINE L1 -1 6154 6065 345 140 0 0 chr4 65514194 65514251 -118774411 + (TA)n Simple_repeat Simple_repeat 2 58 0 22 35 0 0 chr4 65514297 65514326 -118774336 + AT_rich Low_complexity Low_complexity 1 29 0 295 320 63 53 chr4 65514625 65514831 -118773831 + MIR SINE MIR 13 220 -42 22 0 0 0 chr4 65515703 65515725 -118772937 + AT_rich Low_complexity Low_complexity 1 22 0 2246 100 7 0 chr4 65516311 65516666 -118771996 + AluSq SINE Alu 1 357 0 27 49 0 0 chr4 65517361 65517402 -118771260 + AT_rich Low_complexity Low_complexity 1 41 0 959 57 0 0 chr4 65517580 65517702 -118770960 + L1PA5 LINE L1 6033 6154 0 726 311 20 12 chr4 65517963 65518211 -118770451 - MIR SINE MIR 0 262 13 511 326 72 37 chr4 65519951 65520325 -118768337 - L2 LINE L2 -5 3308 2922 5323 67 3 0 chr4 65520537 65521227 -118767435 - L1PA7 LINE L1 0 6154 5463 3206 121 8 9 chr4 65521227 65521785 -118766877 + L1PA7 LINE L1 4919 5467 -743 22 0 0 0 chr4 65522014 65522036 -118766626 + AT_rich Low_complexity Low_complexity 1 22 0 2155 207 29 2 chr4 65522600 65523087 -118765575 - L1MA4 LINE L1 -1 6299 5800 2432 77 3 0 chr4 65523194 65523504 -118765158 - AluY SINE Alu 0 311 1 189 260 40 0 chr4 65523552 65523602 -118765060 + L2 LINE L2 3262 3313 0 2016 137 0 28 chr4 65523649 65523970 -118764692 + AluSx SINE Alu 1 312 0 348 18 53 18 chr4 65523979 65524036 -118764626 + (GAAAA)n Simple_repeat Simple_repeat 2 60 0 416 171 0 0 chr4 65525115 65525191 -118763471 + MADE1 DNA Mariner 3 78 -2 333 0 0 0 chr4 65526436 65526473 -118762189 + (TA)n Simple_repeat Simple_repeat 1 37 0 258 65 0 65 chr4 65526886 65526899 -118761763 + MADE1 DNA Mariner 38 50 -30 1942 121 10 0 chr4 65526899 65527197 -118761465 - L1PB1 LINE L1 -4 6147 5847 258 65 0 65 chr4 65527197 65527229 -118761433 + MADE1 DNA Mariner 50 80 0 508 299 71 41 chr4 65528820 65529114 -118759548 - LTR16B LTR ERVL 0 464 162 488 286 12 24 chr4 65529332 65529500 -118759162 - MIR SINE MIR -15 247 82 351 351 27 14 chr4 65530150 65530298 -118758364 - MIR SINE MIR -65 197 48 206 404 45 19 chr4 65530387 65530543 -118758119 + L3 LINE CR1 1405 1564 -13 23 0 0 0 chr4 65530625 65530648 -118758014 + AT_rich Low_complexity Low_complexity 1 23 0 4810 92 8 86 chr4 65530652 65531040 -118757622 - L1PB1 LINE L1 -1 6150 5860 2108 149 43 3 chr4 65531040 65531390 -118757272 - THE1B LTR MaLR 0 364 1 4810 92 8 86 chr4 65531390 65531835 -118756827 - L1PB1 LINE L1 -291 5860 5382 4586 200 15 22 chr4 65531832 65532879 -118755783 + L1 LINE L1 3445 4484 -1662 * 924 211 81 9 chr4 65533002 65533225 -118755437 + MER8 DNA MER2_type 1 239 0 212 247 27 27 chr4 65534620 65534693 -118753969 - MIR SINE MIR -10 252 180 863 215 4 60 chr4 65534808 65534933 -118753729 + L1 LINE L1 2281 2387 -3759 2410 62 0 7 chr4 65534933 65535237 -118753425 + AluY SINE Alu 1 302 -9 863 215 4 60 chr4 65535237 65535362 -118753300 + L1 LINE L1 2387 2517 -3629 * 7267 196 48 37 chr4 65535355 65537258 -118751404 + L1 LINE L1 3324 5247 -899 223 302 16 0 chr4 65537269 65537332 -118751330 - MIR SINE MIR -106 156 93 298 397 35 0 chr4 65537407 65537581 -118751081 + L2 LINE L2 2060 2239 -1075 198 71 0 0 chr4 65538418 65538446 -118750216 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 4193 149 53 5 chr4 65538451 65539250 -118749412 - L1MA8 LINE L1 -19 6272 5436 220 235 12 12 chr4 65539399 65539484 -118749178 + GA-rich Low_complexity Low_complexity 4 88 0 41 36 0 0 chr4 65539771 65539826 -118748836 + AT_rich Low_complexity Low_complexity 1 55 0 261 240 0 0 chr4 65539857 65539932 -118748730 + (TATATG)n Simple_repeat Simple_repeat 2 76 0 24 53 0 0 chr4 65540109 65540147 -118748515 + AT_rich Low_complexity Low_complexity 1 38 0 1272 173 4 0 chr4 65540151 65540382 -118748280 - L1MA6 LINE L1 -16 6284 6053 1364 35 0 12 chr4 65540386 65540556 -118748106 - L1PA2 LINE L1 0 6155 5988 3168 8 0 0 chr4 65540556 65540913 -118747749 + L1PA2 LINE L1 5639 5995 -160 1253 19 6 0 chr4 65540913 65541070 -118747592 + L1P LINE L1 5191 5348 -798 959 164 26 20 chr4 65541062 65541257 -118747405 - L1MA6 LINE L1 -231 6069 5874 * 21 36 0 0 chr4 65541277 65541305 -118747357 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 65542350 65542372 -118746290 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 65542590 65542611 -118746051 + AT_rich Low_complexity Low_complexity 1 21 0 216 330 93 8 chr4 65542631 65542749 -118745913 + L2 LINE L2 3186 3313 0 31 26 0 0 chr4 65543771 65543809 -118744853 + AT_rich Low_complexity Low_complexity 1 38 0 1247 269 84 42 chr4 65544116 65544710 -118743952 + L1ME2 LINE L1 5424 6042 -122 23 54 0 0 chr4 65545122 65545159 -118743503 + AT_rich Low_complexity Low_complexity 1 37 0 3398 53 7 0 chr4 65545696 65546126 -118742536 - L1PA5 LINE L1 -1 6153 5721 10858 46 3 9 chr4 65546278 65548027 -118740635 - L1P2 LINE L1 -396 5758 4021 307 292 100 15 chr4 65548621 65548751 -118739911 + MER5B DNA MER1_type 6 146 -32 956 318 163 19 chr4 65549228 65550104 -118738558 + L2 LINE L2 2295 3297 -16 310 224 0 31 chr4 65551654 65551752 -118736910 - HAL1 LINE L1 -429 2078 1984 880 264 83 25 chr4 65551787 65552064 -118736598 - MLT1L LTR MaLR -8 607 315 236 167 0 19 chr4 65552080 65552134 -118736528 + T-rich Low_complexity Low_complexity 2 54 0 6882 51 1 0 chr4 65552152 65553000 -118735662 - L1PA5 LINE L1 -3 6151 5303 1613 200 3 0 chr4 65553001 65553291 -118735371 - AluJo SINE Alu -21 291 1 1401 115 0 5 chr4 65553303 65553494 -118735168 - AluSg/x SINE Alu -14 298 109 722 82 0 0 chr4 65553560 65553658 -118735004 - AluY SINE Alu -213 98 1 1434 293 65 40 chr4 65554406 65555002 -118733660 + L1MA8 LINE L1 481 1573 -5923 * 2591 279 54 27 chr4 65554978 65556124 -118732538 + L1MA8 LINE L1 1877 3053 -4512 6343 212 38 25 chr4 65556273 65558141 -118730521 + L1MA8 LINE L1 3280 5179 -2386 3853 165 53 42 chr4 65558135 65559110 -118729552 + L1MA8 LINE L1 5965 7124 -586 * 286 143 0 0 chr4 65559110 65559152 -118729510 - tRNA-Lys-AAG tRNA tRNA -34 42 1 3853 165 53 42 chr4 65559152 65559682 -118728980 + L1MA8 LINE L1 7124 7647 -63 483 18 0 0 chr4 65559707 65559763 -118728899 + (TA)n Simple_repeat Simple_repeat 2 57 0 235 175 18 0 chr4 65559785 65559842 -118728820 + L1MA8 LINE L1 7652 7709 -1 26 74 0 0 chr4 65559912 65559966 -118728696 + AT_rich Low_complexity Low_complexity 1 54 0 182 275 0 0 chr4 65560686 65560726 -118727936 + L2 LINE L2 3215 3254 -18 26 64 0 0 chr4 65560908 65560955 -118727707 + AT_rich Low_complexity Low_complexity 1 47 0 23 54 0 0 chr4 65561157 65561194 -118727468 + AT_rich Low_complexity Low_complexity 1 37 0 281 279 114 0 chr4 65561620 65561699 -118726963 + L2 LINE L2 3226 3313 0 25 75 0 0 chr4 65561792 65561845 -118726817 + AT_rich Low_complexity Low_complexity 1 53 0 219 69 0 0 chr4 65562644 65562673 -118725989 + (CA)n Simple_repeat Simple_repeat 2 30 0 22 0 0 0 chr4 65564218 65564240 -118724422 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr4 65564365 65564399 -118724263 + AT_rich Low_complexity Low_complexity 1 34 0 191 295 181 0 chr4 65565382 65565487 -118723175 - L2 LINE L2 0 3313 3190 25 0 0 0 chr4 65566113 65566138 -118722524 + AT_rich Low_complexity Low_complexity 1 25 0 249 234 26 52 chr4 65566458 65566535 -118722127 + MER5A DNA MER1_type 1 75 -114 292 321 9 18 chr4 65566806 65566915 -118721747 + MER102b DNA MER1_type 220 327 -14 30 45 0 0 chr4 65566924 65566968 -118721694 + AT_rich Low_complexity Low_complexity 1 44 0 32 26 0 0 chr4 65566997 65567036 -118721626 + AT_rich Low_complexity Low_complexity 1 39 0 2421 65 3 0 chr4 65567437 65567745 -118720917 + AluSc SINE Alu 1 309 0 1938 121 30 18 chr4 65568053 65568384 -118720278 + MER1B DNA MER1_type 3 337 0 356 294 206 20 chr4 65568433 65568637 -118720025 + MIR SINE MIR 20 261 -1 1977 121 7 0 chr4 65569677 65569966 -118718696 + AluSx SINE Alu 1 291 -21 188 297 29 101 chr4 65570095 65570233 -118718429 - MIR SINE MIR -44 218 91 28 61 0 0 chr4 65570461 65570510 -118718152 + AT_rich Low_complexity Low_complexity 1 49 0 22 56 0 0 chr4 65571237 65571273 -118717389 + AT_rich Low_complexity Low_complexity 1 36 0 275 278 78 26 chr4 65571990 65572220 -118716442 - L1MC/D LINE L1 -1985 5823 5582 236 250 83 79 chr4 65572635 65572851 -118715811 - L1ME3 LINE L1 -212 5950 5734 21 0 0 0 chr4 65573626 65573647 -118715015 + AT_rich Low_complexity Low_complexity 1 21 0 1899 128 43 13 chr4 65573699 65574003 -118714659 + AluSq SINE Alu 1 313 0 27 73 0 0 chr4 65574040 65574095 -118714567 + AT_rich Low_complexity Low_complexity 1 55 0 208 356 0 11 chr4 65574153 65574243 -118714419 - L2 LINE L2 -2 3311 3223 255 31 0 0 chr4 65575516 65575548 -118713114 + (TC)n Simple_repeat Simple_repeat 2 33 0 21 0 0 0 chr4 65577181 65577202 -118711460 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 65577579 65577608 -118711054 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 65577723 65577751 -118710911 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr4 65577860 65577885 -118710777 + AT_rich Low_complexity Low_complexity 1 25 0 387 287 9 0 chr4 65578385 65578500 -118710162 - MIR SINE MIR 0 262 147 4366 121 9 0 chr4 65578505 65579177 -118709485 - L1PB1 LINE L1 -3 6148 5471 2040 178 12 2 chr4 65579183 65579781 -118708881 + L1PB1 LINE L1 4873 5478 -673 197 321 36 66 chr4 65579796 65579933 -118708729 - MIR SINE MIR -128 134 2 2178 88 3 27 chr4 65580182 65580479 -118708183 - AluSq SINE Alu -11 302 13 196 30 61 0 chr4 65580925 65580958 -118707704 + (TAA)n Simple_repeat Simple_repeat 2 36 0 209 262 49 0 chr4 65581157 65581218 -118707444 - MIR SINE MIR -25 237 174 225 321 68 26 chr4 65582479 65582669 -118705993 + L2 LINE L2 923 1120 -2194 268 198 42 10 chr4 65583156 65583252 -118705410 + (TTA)n Simple_repeat Simple_repeat 1 99 0 7759 168 51 4 chr4 65583650 65584963 -118703699 + L1MA2 LINE L1 993 2367 -5198 7968 156 18 8 chr4 65584963 65586069 -118702593 + L1MA2 LINE L1 5258 6351 -1372 2021 112 3 33 chr4 65586069 65586372 -118702290 + AluSc SINE Alu 1 294 -15 7968 156 18 8 chr4 65586372 65587219 -118701443 + L1MA2 LINE L1 6351 7243 -480 2022 122 32 35 chr4 65587219 65587595 -118701067 - THE1C LTR MaLR 0 375 1 7968 156 18 8 chr4 65587595 65588036 -118700626 + L1MA2 LINE L1 7243 7678 -45 694 93 74 0 chr4 65588036 65588143 -118700519 + L1PA10 LINE L1 6049 6164 -4 504 266 235 20 chr4 65589551 65590006 -118698656 - L1M4 LINE L1 -1122 5228 4676 1465 230 176 37 chr4 65590007 65590423 -118698239 + MLT1E2 LTR MaLR 1 512 -114 5247 15 2 10 chr4 65590423 65591040 -118697622 + L1PA2 LINE L1 5544 6155 0 1465 230 176 37 chr4 65591040 65591170 -118697492 + MLT1E2 LTR MaLR 512 623 -3 437 278 159 7 chr4 65591177 65591486 -118697176 - L1M4 LINE L1 -1677 4673 4318 814 238 120 26 chr4 65591562 65591978 -118696684 + MLT1E2-int LTR MaLR 34 606 -765 212 0 0 35 chr4 65592140 65592169 -118696493 + (TA)n Simple_repeat Simple_repeat 2 29 0 352 301 97 0 chr4 65593160 65593253 -118695409 + L2 LINE L2 3171 3272 0 28 48 0 0 chr4 65593286 65593328 -118695334 + AT_rich Low_complexity Low_complexity 1 42 0 385 328 54 25 chr4 65593371 65593575 -118695087 - MIR SINE MIR -33 229 20 430 328 53 42 chr4 65594243 65594505 -118694157 - L2 LINE L2 -691 2623 2359 1860 147 17 0 chr4 65594951 65595250 -118693412 + AluSx SINE Alu 1 304 -8 21 0 0 0 chr4 65595647 65595668 -118692994 + AT_rich Low_complexity Low_complexity 1 21 0 3256 198 57 15 chr4 65595863 65596731 -118691931 - L1M4 LINE L1 -2700 3650 2747 3537 273 41 35 chr4 65596735 65598295 -118690367 - L1M4 LINE L1 -4174 2177 882 2040 105 21 0 chr4 65598295 65598581 -118690081 + AluSx SINE Alu 21 312 0 3537 273 41 35 chr4 65598581 65598897 -118689765 - L1M4 LINE L1 -5469 882 569 300 296 23 11 chr4 65598985 65599073 -118689589 - L1M4 LINE L1 -5545 736 648 1771 251 170 36 chr4 65599139 65599716 -118688946 - L1M4 LINE L1 -5617 664 11 219 216 14 27 chr4 65603160 65603234 -118685428 + (TAATG)n Simple_repeat Simple_repeat 3 75 0 380 323 15 0 chr4 65603272 65603402 -118685260 + MIR SINE MIR 113 244 -18 2361 34 7 14 chr4 65603678 65603971 -118684691 - AluY SINE Alu -17 294 4 231 88 0 0 chr4 65603990 65604024 -118684638 + (CA)n Simple_repeat Simple_repeat 2 35 0 875 19 0 0 chr4 65605202 65605306 -118683356 - L1PA4 LINE L1 -6 6149 6046 214 224 143 31 chr4 65605556 65605654 -118683008 + L2 LINE L2 3205 3313 0 32 0 0 0 chr4 65605740 65605772 -118682890 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr4 65605813 65605837 -118682825 + AT_rich Low_complexity Low_complexity 1 24 0 1847 98 0 8 chr4 65605837 65606092 -118682570 - AluSc SINE Alu -24 285 33 1056 275 94 13 chr4 65607318 65607700 -118680962 - L1ME1 LINE L1 -5 6230 5818 447 225 58 14 chr4 65607712 65607850 -118680812 - L1ME1 LINE L1 -1963 4252 4109 775 284 111 29 chr4 65608006 65608312 -118680350 - L1ME1 LINE L1 -5648 748 418 1243 181 41 33 chr4 65608343 65608614 -118680048 - L1PA16 LINE L1 -10 6156 5884 701 276 86 44 chr4 65608613 65608711 -118679951 - L1ME1 LINE L1 -6017 379 287 * 321 26 0 0 chr4 65608711 65608749 -118679913 + (TC)n Simple_repeat Simple_repeat 2 39 0 279 0 0 0 chr4 65608748 65608779 -118679883 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 701 276 86 44 chr4 65608749 65608995 -118679667 - L1ME1 LINE L1 -6109 287 52 534 103 0 0 chr4 65609461 65609539 -118679123 + (TA)n Simple_repeat Simple_repeat 1 78 0 214 398 48 11 chr4 65609566 65609752 -118678910 - L2 LINE L2 -453 2861 2669 25 75 0 0 chr4 65611125 65611178 -118677484 + AT_rich Low_complexity Low_complexity 1 53 0 572 332 74 60 chr4 65611454 65611618 -118677044 + L2 LINE L2 2461 2621 -692 2024 121 3 3 chr4 65611618 65611916 -118676746 - AluSc SINE Alu -11 298 1 572 332 74 60 chr4 65611916 65612593 -118676069 + L2 LINE L2 2621 3312 -1 315 259 81 76 chr4 65614339 65614524 -118674138 - L1MD2 LINE L1 -410 5949 5764 198 167 0 0 chr4 65614648 65614684 -118673978 + (TATG)n Simple_repeat Simple_repeat 4 39 0 6758 25 0 1 chr4 65615804 65616598 -118672064 + L1PA3 LINE L1 5363 6155 0 23 0 0 0 chr4 65616599 65616622 -118672040 + AT_rich Low_complexity Low_complexity 1 23 0 339 358 50 20 chr4 65617164 65617365 -118671297 + MIR SINE MIR 2 208 -54 204 279 199 59 chr4 65617636 65617772 -118670890 - MIR SINE MIR -42 220 66 303 195 49 12 chr4 65618282 65618364 -118670298 - MLT1J2 LTR MaLR -295 155 71 219 350 93 7 chr4 65619004 65619144 -118669518 - L2 LINE L2 -4 3309 3158 1628 186 3 7 chr4 65619223 65619513 -118669149 + AluJo SINE Alu 3 291 -21 2944 139 102 42 chr4 65619598 65620175 -118668487 - MER6A DNA MER2_type -1 604 253 243 341 135 0 chr4 65620180 65620306 -118668356 + L1ME3 LINE L1 5436 5578 -586 328 281 23 8 chr4 65620313 65620441 -118668221 + L1ME3 LINE L1 6027 6156 -6 396 304 78 13 chr4 65620664 65620894 -118667768 + L1 LINE L1 4625 4869 -1277 311 323 80 13 chr4 65620930 65621215 -118667447 + L1 LINE L1 4924 5232 -914 1929 188 66 56 chr4 65621225 65622073 -118666589 + L1M4 LINE L1 4787 5619 -565 707 307 42 47 chr4 65622077 65622340 -118666322 + L2 LINE L2 2302 2564 -750 1638 65 65 0 chr4 65622340 65622571 -118666091 - L1MA1 LINE L1 0 6302 6057 707 307 42 47 chr4 65622571 65622737 -118665925 + L2 LINE L2 2564 2729 -585 649 284 122 0 chr4 65623567 65623887 -118664775 - HsTC2 DNA Tc2 -1317 581 223 227 279 23 0 chr4 65623928 65624014 -118664648 - HsTC2 DNA Tc2 -1810 88 1 211 333 128 32 chr4 65624300 65624456 -118664206 + MIR SINE MIR 49 219 -43 24 100 0 0 chr4 65624682 65624762 -118663900 + AT_rich Low_complexity Low_complexity 1 80 0 879 183 22 22 chr4 65625443 65625623 -118663039 + MER6A DNA MER2_type 1 180 -425 * 1876 120 35 0 chr4 65625620 65625904 -118662758 + MER6A DNA MER2_type 309 602 -3 206 366 24 0 chr4 65626246 65626328 -118662334 - L3 LINE CR1 -95 1482 1399 477 199 20 20 chr4 65626638 65626784 -118661878 + C-rich Low_complexity Low_complexity 5 150 0 417 240 40 0 chr4 65626834 65626934 -118661728 - MER5A DNA MER1_type -73 116 13 28 48 0 0 chr4 65627968 65628010 -118660652 + AT_rich Low_complexity Low_complexity 1 42 0 31 26 0 0 chr4 65628517 65628555 -118660107 + AT_rich Low_complexity Low_complexity 1 38 0 1352 316 77 28 chr4 65628680 65629298 -118659364 + L2 LINE L2 2375 3028 -285 521 174 69 35 chr4 65629300 65629444 -118659218 + MER53 DNA DNA 2 150 -39 282 73 0 0 chr4 65629678 65629719 -118658943 + (CA)n Simple_repeat Simple_repeat 1 41 0 26 30 0 0 chr4 65630170 65630203 -118658459 + AT_rich Low_complexity Low_complexity 1 33 0 246 330 34 8 chr4 65630413 65630531 -118658131 - L3b LINE CR1 -359 1224 1104 306 143 0 0 chr4 65632563 65632626 -118656036 + (CA)n Simple_repeat Simple_repeat 1 63 0 494 351 68 16 chr4 65633156 65633347 -118655315 - MIR SINE MIR -4 258 58 227 320 148 8 chr4 65633597 65633725 -118654937 - MIR3 SINE MIR -10 198 53 204 306 69 0 chr4 65633775 65633847 -118654815 + L2 LINE L2 2631 2707 -607 884 261 79 70 chr4 65633859 65634262 -118654400 - MLT1I LTR MaLR 0 409 3 184 244 0 0 chr4 65634470 65634511 -118654151 + L2 LINE L2 2981 3021 -251 338 340 57 6 chr4 65635097 65635256 -118653406 - MIR SINE MIR -90 172 6 1849 165 0 9 chr4 65636400 65636715 -118651947 + AluSx SINE Alu 1 312 0 33 25 0 0 chr4 65636934 65636974 -118651688 + AT_rich Low_complexity Low_complexity 1 40 0 582 311 19 63 chr4 65637146 65637416 -118651246 + MIR SINE MIR 2 259 -3 268 91 23 0 chr4 65638167 65638211 -118650451 - MADE1 DNA Mariner -1 79 35 370 268 107 0 chr4 65638372 65638484 -118650178 + MIR SINE MIR 31 154 -108 276 253 137 0 chr4 65638657 65638752 -118649910 - MER63 DNA MER1_type -328 734 1 21 0 0 0 chr4 65638846 65638867 -118649795 + AT_rich Low_complexity Low_complexity 1 21 0 713 344 70 6 chr4 65638867 65639229 -118649433 - L2 LINE L2 -139 3174 2791 2567 29 0 0 chr4 65639243 65639559 -118649103 - L1P LINE L1 -796 5350 5035 327 282 0 12 chr4 65639579 65639664 -118648998 + GA-rich Low_complexity Low_complexity 6 89 0 202 29 57 0 chr4 65639677 65639712 -118648950 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 197 293 0 35 chr4 65640899 65640957 -118647705 + MIR SINE MIR 19 74 -134 232 385 26 17 chr4 65640977 65641094 -118647568 + L2 LINE L2 3154 3271 -1 229 219 62 0 chr4 65641112 65641176 -118647486 + MIR SINE MIR 97 164 -98 2000 166 25 18 chr4 65642468 65642866 -118645796 - MER57A LTR ERV1 0 403 3 217 200 0 0 chr4 65645809 65645849 -118642813 - L2 LINE L2 -11 3302 3263 205 158 0 26 chr4 65645817 65645855 -118642807 - MIR SINE MIR -13 249 213 * 21 0 0 0 chr4 65647573 65647594 -118641068 + AT_rich Low_complexity Low_complexity 1 21 0 335 278 105 43 chr4 65647888 65648050 -118640612 - MER5B DNA MER1_type 0 178 7 1522 267 92 4 chr4 65649870 65650360 -118638302 - MER90 LTR ERV1 0 614 82 21 0 0 0 chr4 65651650 65651671 -118636991 + AT_rich Low_complexity Low_complexity 1 21 0 2110 62 10 17 chr4 65653248 65653539 -118635123 + L1PA8 LINE L1 5880 6168 -4 2111 224 97 22 chr4 65653624 65654214 -118634448 - L1ME2 LINE L1 -34 6628 5995 368 246 46 5 chr4 65654462 65654599 -118634063 - L1ME2 LINE L1 -704 5960 5838 1007 304 70 38 chr4 65654616 65655416 -118633246 - L1ME2 LINE L1 -4542 2283 1304 37554 90 9 8 chr4 65655518 65661655 -118627007 - L1PA6 LINE L1 0 6154 11 1099 221 56 0 chr4 65661943 65662192 -118626470 - L1PB4 LINE L1 -7 6149 5887 229 355 114 23 chr4 65662192 65662578 -118626084 + L2 LINE L2 2284 2704 -610 291 28 0 0 chr4 65662649 65662685 -118625977 + (CA)n Simple_repeat Simple_repeat 1 36 0 236 361 59 17 chr4 65663003 65663122 -118625540 + L2 LINE L2 3178 3301 -12 192 276 239 22 chr4 65664154 65664288 -118624374 + MIR SINE MIR 66 228 -34 255 311 25 41 chr4 65664971 65665093 -118623569 + L3 LINE CR1 1447 1566 -11 694 169 0 0 chr4 65665482 65665600 -118623062 - L1PB4 LINE L1 -184 5972 5855 216 0 0 0 chr4 65665703 65665727 -118622935 + (A)n Simple_repeat Simple_repeat 1 24 0 557 340 94 28 chr4 65665877 65666301 -118622361 - L1ME2 LINE L1 -5617 1017 566 448 372 91 22 chr4 65666440 65666973 -118621689 + L2 LINE L2 2688 3272 0 1876 110 0 0 chr4 65667135 65667389 -118621273 + AluSc SINE Alu 39 292 -17 22 35 0 0 chr4 65667532 65667561 -118621101 + AT_rich Low_complexity Low_complexity 1 29 0 1996 116 3 10 chr4 65668211 65668503 -118620159 + AluSg1 SINE Alu 1 290 -19 200 367 20 0 chr4 65668516 65668614 -118620048 - MIR SINE MIR -150 112 13 21 0 0 0 chr4 65668948 65668969 -118619693 + AT_rich Low_complexity Low_complexity 1 21 0 255 311 25 41 chr4 65669832 65669954 -118618708 - L3 LINE CR1 -11 1566 1447 192 276 239 22 chr4 65670636 65670770 -118617892 - MIR SINE MIR -34 228 66 307 306 58 25 chr4 65671808 65671929 -118616733 - L2 LINE L2 -11 3302 3178 379 296 0 0 chr4 65672212 65672320 -118616342 - MER112 DNA MER1_type -150 110 3 320 329 214 33 chr4 65672323 65673023 -118615639 - L2 LINE L2 -615 2699 1873 378 0 0 0 chr4 65673083 65673125 -118615537 + (CA)n Simple_repeat Simple_repeat 2 43 0 531 314 50 46 chr4 65673336 65673597 -118615065 + MIR SINE MIR 1 262 0 222 233 0 82 chr4 65675427 65675500 -118613162 + L2 LINE L2 3193 3259 -13 223 184 20 0 chr4 65675500 65675549 -118613113 + (TG)n Simple_repeat Simple_repeat 2 51 0 13238 143 38 33 chr4 65675969 65678353 -118610309 - Tigger1 DNA MER2_type 0 2418 22 593 105 0 0 chr4 65678848 65678934 -118609728 - Tigger1 DNA MER2_type -947 1471 1386 357 91 0 0 chr4 65679152 65679207 -118609455 - L1PA13 LINE L1 -4 6159 6105 6098 145 66 35 chr4 65679608 65679662 -118609000 + Tigger3b DNA MER2_type 29 80 -2948 744 169 16 0 chr4 65679662 65679786 -118608876 + FLAM_C SINE Alu 3 128 -5 6098 145 66 35 chr4 65679786 65680897 -118607765 + Tigger3b DNA MER2_type 80 1230 -1 180 304 0 0 chr4 65682826 65682872 -118605790 - L2 LINE L2 -394 2878 2833 226 202 24 12 chr4 65683076 65683160 -118605502 + (TATAA)n Simple_repeat Simple_repeat 4 88 0 1402 151 58 21 chr4 65684474 65684765 -118603897 - Tigger3(Golem) DNA MER2_type -186 2843 2542 812 127 13 13 chr4 65684805 65684955 -118603707 - Tigger3(Golem) DNA MER2_type -595 2434 2285 521 221 29 0 chr4 65684955 65685059 -118603603 - Tigger3(Golem) DNA MER2_type -2921 108 2 216 293 98 12 chr4 65685252 65685334 -118603328 - L2 LINE L2 -188 3084 2996 1228 351 115 25 chr4 65686350 65687723 -118600939 - L2 LINE L2 -2 3311 1817 335 336 10 10 chr4 65689017 65689121 -118599541 + L2 LINE L2 3192 3295 -18 21 0 0 0 chr4 65690016 65690037 -118598625 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 65690250 65690279 -118598383 + AT_rich Low_complexity Low_complexity 1 29 0 29 70 0 0 chr4 65690449 65690506 -118598156 + AT_rich Low_complexity Low_complexity 1 57 0 356 39 0 20 chr4 65690567 65690618 -118598044 + (TTTTA)n Simple_repeat Simple_repeat 1 50 0 1281 25 6 19 chr4 65690618 65690780 -118597882 - L1PA2 LINE L1 -24 6131 5972 411 297 47 16 chr4 65692279 65692407 -118596255 - MIR3 SINE MIR -34 174 43 28 0 0 0 chr4 65693061 65693089 -118595573 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 65693290 65693312 -118595350 + AT_rich Low_complexity Low_complexity 1 22 0 213 279 0 0 chr4 65693812 65693880 -118594782 + T-rich Low_complexity Low_complexity 5 72 0 349 339 77 54 chr4 65694333 65694593 -118594069 + L1MC1 LINE L1 5329 5594 -527 2221 106 7 0 chr4 65694952 65695253 -118593409 - AluSx SINE Alu -9 303 1 24 0 0 0 chr4 65695443 65695467 -118593195 + AT_rich Low_complexity Low_complexity 1 24 0 34 24 0 0 chr4 65697048 65697089 -118591573 + AT_rich Low_complexity Low_complexity 1 41 0 21 57 0 0 chr4 65697237 65697272 -118591390 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 65697957 65697978 -118590684 + AT_rich Low_complexity Low_complexity 1 21 0 358 319 92 16 chr4 65698885 65699070 -118589592 - MIR SINE MIR -58 204 6 302 98 0 16 chr4 65700171 65700232 -118588430 + (CA)n Simple_repeat Simple_repeat 2 61 0 270 276 135 13 chr4 65700724 65700880 -118587782 - MIR SINE MIR 0 262 88 4266 167 32 93 chr4 65700927 65701284 -118587378 + L1MA9 LINE L1 4782 5159 -1153 1934 37 8 0 chr4 65701284 65701523 -118587139 + L1PA4 LINE L1 5911 6154 -1 4266 167 32 93 chr4 65701523 65701795 -118586867 + L1MA9 LINE L1 5159 5446 -866 2376 87 0 3 chr4 65701795 65702105 -118586557 + AluSc SINE Alu 1 309 0 4266 167 32 93 chr4 65702105 65702564 -118586098 + L1MA9 LINE L1 5446 5773 -539 333 0 0 0 chr4 65702564 65702601 -118586061 + (CA)n Simple_repeat Simple_repeat 2 38 0 4266 167 32 93 chr4 65702601 65703074 -118585588 + L1MA9 LINE L1 5773 6274 -38 267 284 113 21 chr4 65703692 65703833 -118584829 - MIR SINE MIR -5 257 104 195 268 24 0 chr4 65703885 65703926 -118584736 + MIR SINE MIR 58 99 -109 462 261 136 11 chr4 65703954 65704138 -118584524 - MIR SINE MIR -13 249 43 273 310 96 92 chr4 65704513 65704752 -118583910 + L2 LINE L2 3032 3271 -1 25 0 0 0 chr4 65706376 65706401 -118582261 + AT_rich Low_complexity Low_complexity 1 25 0 3561 165 18 12 chr4 65706938 65707599 -118581063 + L1MC1 LINE L1 5652 6316 -17 901 10 0 0 chr4 65707777 65707880 -118580782 - L1PA2 LINE L1 -251 5904 5802 2046 4 0 0 chr4 65707880 65708113 -118580549 + L1PA2 LINE L1 5923 6155 0 209 360 34 57 chr4 65711468 65711643 -118577019 - L2 LINE L2 -5 3267 3097 643 219 88 15 chr4 65711693 65711830 -118576832 + FRAM SINE Alu 9 155 -21 180 152 0 0 chr4 65711981 65712014 -118576648 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 5552 156 25 3 chr4 65712457 65713516 -118575146 + L1 LINE L1 4248 5330 -816 693 230 40 0 chr4 65713526 65713674 -118574988 + AluSg/x SINE Alu 148 301 -11 6392 84 41 13 chr4 65713674 65714618 -118574044 + L1MA1 LINE L1 5325 6295 -7 1201 150 11 114 chr4 65716013 65716148 -118572514 + AluJo SINE Alu 8 101 -211 2371 75 0 3 chr4 65716148 65716454 -118572208 + AluY SINE Alu 1 305 -6 1201 150 11 114 chr4 65716454 65716598 -118572064 + AluJo SINE Alu 101 258 -54 225 0 0 0 chr4 65716602 65716627 -118572035 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 180 0 0 0 chr4 65717269 65717289 -118571373 + (TATATG)n Simple_repeat Simple_repeat 4 23 0 22 35 0 0 chr4 65717884 65717913 -118570749 + AT_rich Low_complexity Low_complexity 1 29 0 38 75 0 0 chr4 65718616 65718696 -118569966 + AT_rich Low_complexity Low_complexity 1 80 0 22 35 0 0 chr4 65718773 65718802 -118569860 + AT_rich Low_complexity Low_complexity 1 29 0 30 27 0 0 chr4 65718893 65718930 -118569732 + AT_rich Low_complexity Low_complexity 1 37 0 188 114 0 57 chr4 65729223 65729258 -118559404 + L3b LINE CR1 1288 1320 -263 37711 27 23 1 chr4 65731504 65736905 -118551757 + L1HS LINE L1 634 6155 0 354 121 0 0 chr4 65736906 65736972 -118551690 + (A)n Simple_repeat Simple_repeat 1 66 0 236 188 0 14 chr4 65740154 65740223 -118548439 + L1P LINE L1 4981 5048 -1098 23 68 0 0 chr4 65740333 65740377 -118548285 + AT_rich Low_complexity Low_complexity 1 44 0 661 244 90 21 chr4 65740767 65741001 -118547661 - MIR SINE MIR -8 254 5 320 300 118 57 chr4 65741554 65741851 -118546811 - L2 LINE L2 -1 3312 2998 258 290 113 24 chr4 65742620 65742744 -118545918 - MIR SINE MIR -120 142 8 266 296 23 0 chr4 65743071 65743159 -118545503 + MLT1K LTR MaLR 328 417 -171 544 202 0 18 chr4 65743341 65743455 -118545207 - AluJo SINE Alu -178 134 23 424 326 87 26 chr4 65744106 65744370 -118544292 + L2 LINE L2 2319 2598 -716 242 385 36 54 chr4 65744384 65744662 -118544000 + L2 LINE L2 2699 2971 -343 1642 217 43 32 chr4 65744820 65745281 -118543381 - MLT1C LTR MaLR 0 467 2 393 250 29 0 chr4 65745325 65745429 -118543233 + MER94 DNA DNA 1 107 -27 294 263 53 26 chr4 65745469 65745545 -118543117 + L2 LINE L2 3236 3313 0 1865 153 82 7 chr4 65745850 65746226 -118542436 - MLT2C2 LTR ERVL -2 395 1 23 33 0 0 chr4 65746927 65746957 -118541705 + AT_rich Low_complexity Low_complexity 1 30 0 998 392 0 64 chr4 65747787 65748070 -118540592 - AluJb SINE Alu -2 310 46 737 182 0 0 chr4 65748070 65748191 -118540471 - AluJb SINE Alu -176 136 16 23 0 0 0 chr4 65748696 65748719 -118539943 + AT_rich Low_complexity Low_complexity 1 23 0 222 231 0 29 chr4 65750173 65750277 -118538385 + (TTA)n Simple_repeat Simple_repeat 1 101 0 24 32 0 0 chr4 65750648 65750679 -118537983 + AT_rich Low_complexity Low_complexity 1 31 0 363 226 110 34 chr4 65753796 65753942 -118534720 - MER103 DNA DNA -2 164 8 2130 118 3 0 chr4 65755465 65755761 -118532901 - AluY SINE Alu -14 297 1 436 333 29 6 chr4 65755767 65755938 -118532724 - MIR SINE MIR -70 192 18 220 359 86 29 chr4 65757365 65757574 -118531088 + L2 LINE L2 2463 2683 -631 894 208 135 0 chr4 65757676 65757868 -118530794 + MER20 DNA MER1_type 2 219 0 3338 53 0 0 chr4 65757995 65758410 -118530252 + L1PA6 LINE L1 5740 6154 0 851 256 102 55 chr4 65758511 65758855 -118529807 + MLT1H LTR MaLR 190 549 0 392 368 14 18 chr4 65758872 65759095 -118529567 - HERV16 LTR ERVL -4432 564 343 282 401 11 11 chr4 65759205 65759382 -118529280 + MER5A DNA MER1_type 2 178 -11 728 272 27 31 chr4 65759430 65759654 -118529008 + MER69 DNA AcHobo 25 247 -979 348 195 35 23 chr4 65759699 65759786 -118528876 + MER69 DNA AcHobo 2434 2521 -5 253 286 34 37 chr4 65759794 65759907 -118528755 - MIR SINE MIR -33 175 63 423 152 9 29 chr4 65761919 65762024 -118526638 + GA-rich Low_complexity Low_complexity 4 106 0 23 33 0 0 chr4 65762044 65762074 -118526588 + AT_rich Low_complexity Low_complexity 1 30 0 209 319 14 0 chr4 65762074 65762143 -118526519 - MIR SINE MIR -121 141 72 308 286 84 42 chr4 65764045 65764258 -118524404 + MARNA DNA Mariner 23 244 -342 311 157 14 43 chr4 65764643 65764713 -118523949 + MER3 DNA MER1_type 141 208 -1 249 279 0 25 chr4 65765731 65765810 -118522852 - MIR SINE MIR -18 244 168 301 346 101 18 chr4 65766350 65766567 -118522095 - L2 LINE L2 -1411 1903 1669 204 408 50 0 chr4 65766608 65766728 -118521934 - L2 LINE L2 -652 2662 2537 180 337 89 30 chr4 65767345 65767446 -118521216 + L2 LINE L2 2869 2975 -339 776 201 7 0 chr4 65767569 65767708 -118520954 - AluJo SINE Alu -172 140 1 306 299 26 26 chr4 65767760 65767877 -118520785 - MIR SINE MIR -38 224 108 1345 179 54 98 chr4 65768406 65768847 -118519815 - MLT1E1 LTR MaLR -6 648 227 301 175 18 18 chr4 65768848 65768905 -118519757 - MLT1E1 LTR MaLR -597 57 1 990 196 38 14 chr4 65770286 65770495 -118518167 - AluJo SINE Alu -12 300 87 1068 334 88 21 chr4 65770507 65771096 -118517566 - L2 LINE L2 -24 3289 2616 819 78 26 0 chr4 65771096 65771212 -118517450 + L1PA10 LINE L1 6047 6165 -3 1068 334 88 21 chr4 65771212 65771536 -118517126 - L2 LINE L2 -697 2616 2315 542 318 47 28 chr4 65771536 65771747 -118516915 - MLT1E2 LTR MaLR 0 626 412 617 299 88 51 chr4 65771912 65772287 -118516375 - L2 LINE L2 -2474 840 452 338 391 103 6 chr4 65772627 65772975 -118515687 - L2 LINE L2 -2860 454 73 273 287 89 0 chr4 65773084 65773185 -118515477 - L2 LINE L2 -5 3308 3199 25 0 0 0 chr4 65773470 65773495 -118515167 + AT_rich Low_complexity Low_complexity 1 25 0 591 232 7 28 chr4 65774945 65775087 -118513575 + MLT1J1 LTR MaLR 31 169 -277 6812 162 12 11 chr4 65775455 65777756 -118510906 - L1PB1 LINE L1 -10 6141 3846 20177 33 0 6 chr4 65777756 65780996 -118507666 + L1PA4 LINE L1 2918 6155 0 744 87 47 31 chr4 65781007 65781134 -118507528 + LTR7 LTR ERV1 322 450 0 1300 71 66 10 chr4 65781135 65781333 -118507329 - MER4-int LTR ERV1 -1784 4814 4606 1814 129 18 25 chr4 65781657 65781965 -118506697 + AluSx SINE Alu 1 306 0 207 339 0 0 chr4 65783671 65783727 -118504935 + L2 LINE L2 3200 3255 -17 417 153 10 20 chr4 65783728 65783826 -118504836 + GA-rich Low_complexity Low_complexity 2 98 0 301 434 0 0 chr4 65783835 65784008 -118504654 - MIR SINE MIR -89 173 1 23 0 0 0 chr4 65784424 65784447 -118504215 + AT_rich Low_complexity Low_complexity 1 23 0 379 22 0 0 chr4 65786029 65786075 -118502587 + MADE1 DNA Mariner 35 80 0 225 157 14 43 chr4 65786154 65786224 -118502438 + GA-rich Low_complexity Low_complexity 1 68 0 437 300 39 51 chr4 65786247 65786662 -118502000 + L1MC4a LINE L1 5937 6351 -1457 1204 242 9 6 chr4 65786663 65787002 -118501660 - L1MCc LINE L1 -3217 3724 3385 713 232 73 36 chr4 65787004 65787269 -118501393 - L1MCc LINE L1 -4690 2253 1952 216 97 0 0 chr4 65787269 65787300 -118501362 + (TG)n Simple_repeat Simple_repeat 2 32 0 713 232 73 36 chr4 65787300 65787428 -118501234 - L1MCc LINE L1 -4991 1952 1830 891 245 105 27 chr4 65787450 65787912 -118500750 - L1MCc LINE L1 -4887 1536 1196 720 0 0 0 chr4 65788681 65788805 -118499857 + L1PA2 LINE L1 6053 6176 0 27 0 0 0 chr4 65788827 65788854 -118499808 + AT_rich Low_complexity Low_complexity 1 27 0 213 214 36 0 chr4 65789680 65789736 -118498926 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 2166 120 14 14 chr4 65789741 65790091 -118498571 - L1PA16 LINE L1 -9 6157 5808 21 0 0 0 chr4 65790100 65790121 -118498541 + AT_rich Low_complexity Low_complexity 1 21 0 221 344 83 19 chr4 65790963 65791120 -118497542 + L3 LINE CR1 1407 1573 -4 26 82 0 0 chr4 65791979 65792040 -118496622 + AT_rich Low_complexity Low_complexity 1 61 0 729 258 151 27 chr4 65792700 65792885 -118495777 - Charlie2 DNA MER1_type -41 2821 2660 1786 106 4 4 chr4 65792885 65793130 -118495532 + AluSq SINE Alu 60 304 -9 729 258 151 27 chr4 65793130 65793468 -118495194 - Charlie2 DNA MER1_type -202 2660 2233 663 309 44 46 chr4 65793471 65793837 -118494825 - Charlie2 DNA MER1_type -2497 365 1 380 218 18 55 chr4 65794598 65794708 -118493954 + LTR67 LTR ERVL 31 136 -421 358 356 55 51 chr4 65794755 65795183 -118493479 + L2 LINE L2 2744 3176 -96 25 31 0 0 chr4 65796341 65796373 -118492289 + AT_rich Low_complexity Low_complexity 1 32 0 804 182 42 12 chr4 65796784 65796949 -118491713 - L1MC3 LINE L1 0 7785 7616 334 349 36 60 chr4 65797328 65797609 -118491053 - L2 LINE L2 -1720 1594 1321 300 315 99 6 chr4 65797897 65798059 -118490603 + MIR SINE MIR 71 247 -15 28 29 0 0 chr4 65798226 65798261 -118490401 + AT_rich Low_complexity Low_complexity 1 35 0 183 324 69 10 chr4 65799079 65799129 -118489533 - MIR SINE MIR -57 205 159 1750 177 0 10 chr4 65799129 65799423 -118489239 - AluJb SINE Alu -11 301 11 183 324 69 10 chr4 65799423 65799474 -118489188 - MIR SINE MIR -103 159 98 592 212 8 8 chr4 65799483 65799601 -118489061 + MLT1A1 LTR MaLR 248 365 0 736 221 32 0 chr4 65799832 65799990 -118488672 - FAM SINE Alu -8 167 5 551 171 86 0 chr4 65800127 65800232 -118488430 + AluJo SINE Alu 1 114 -188 1896 156 140 13 chr4 65800233 65800612 -118488050 - MSTA LTR MaLR -1 427 1 813 192 23 34 chr4 65800615 65800792 -118487870 + AluJo SINE Alu 113 287 -25 23 0 0 0 chr4 65800810 65800833 -118487829 + AT_rich Low_complexity Low_complexity 1 23 0 262 159 0 29 chr4 65801067 65801136 -118487526 + L1PB4 LINE L1 5240 5306 -840 895 113 0 0 chr4 65801136 65801269 -118487393 + L1PA13 LINE L1 5791 5923 -240 335 22 0 22 chr4 65801279 65801324 -118487338 + (TG)n Simple_repeat Simple_repeat 2 45 0 195 220 0 0 chr4 65801532 65801582 -118487080 + (TA)n Simple_repeat Simple_repeat 1 50 0 243 0 0 0 chr4 65801603 65801630 -118487032 + (CA)n Simple_repeat Simple_repeat 1 27 0 1928 166 37 3 chr4 65801630 65801979 -118486683 + L1PB4 LINE L1 5793 6153 -3 4336 183 79 10 chr4 65802091 65803051 -118485611 - L1MC2 LINE L1 -11 6333 5308 378 0 0 0 chr4 65803280 65803322 -118485340 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 1145 282 103 39 chr4 65804287 65804953 -118483709 - L2 LINE L2 -180 3133 2424 603 184 27 0 chr4 65804975 65805104 -118483558 + MSTD LTR MaLR 226 396 0 240 285 56 0 chr4 65805186 65805287 -118483375 + MLT1J LTR MaLR 38 181 -325 671 267 19 15 chr4 65805364 65805570 -118483092 + Charlie4 DNA MER1_type 1 207 -1754 25 31 0 0 chr4 65805597 65805629 -118483033 + AT_rich Low_complexity Low_complexity 1 32 0 32 43 0 0 chr4 65805986 65806032 -118482630 + AT_rich Low_complexity Low_complexity 1 46 0 223 243 201 35 chr4 65806550 65806694 -118481968 + L2 LINE L2 3146 3313 0 377 23 0 0 chr4 65807072 65807115 -118481547 + (GA)n Simple_repeat Simple_repeat 2 44 0 353 297 0 27 chr4 65807161 65807272 -118481390 + C-rich Low_complexity Low_complexity 6 113 0 344 339 0 40 chr4 65807328 65807502 -118481160 + C-rich Low_complexity Low_complexity 4 170 0 223 243 201 35 chr4 65807952 65808096 -118480566 + L2 LINE L2 3146 3313 0 225 307 67 33 chr4 65808228 65808378 -118480284 + LTR68 LTR ERV1 8 162 -578 297 0 0 0 chr4 65808473 65808506 -118480156 + (GA)n Simple_repeat Simple_repeat 2 34 0 1877 159 35 27 chr4 65809255 65809627 -118479035 + THE1C LTR MaLR 1 375 0 8820 147 25 30 chr4 65809627 65811142 -118477520 + THE1C-int LTR MaLR 1 1508 -72 231 62 0 0 chr4 65811173 65811205 -118477457 - THE1-int LTR MaLR -35 1545 1514 394 114 0 43 chr4 65811260 65811330 -118477332 + THE1C-int LTR MaLR 1514 1580 0 1901 151 38 27 chr4 65811330 65811701 -118476961 + THE1C LTR MaLR 1 375 0 225 378 19 39 chr4 65811706 65811862 -118476800 + L2 LINE L2 2934 3086 -186 301 324 65 19 chr4 65812575 65812683 -118475979 + L2 LINE L2 3156 3268 -4 25 31 0 0 chr4 65813034 65813066 -118475596 + AT_rich Low_complexity Low_complexity 1 32 0 432 303 26 13 chr4 65813926 65814078 -118474584 + LTR33 LTR ERVL 332 485 -36 1360 87 5 0 chr4 65814232 65814417 -118474245 - L1PA12 LINE L1 -590 5573 5388 4284 78 19 2 chr4 65814417 65815003 -118473659 + L1PA12 LINE L1 5573 6168 0 461 269 33 14 chr4 65815141 65815353 -118473309 + L1MC4a LINE L1 5255 5470 -2338 533 271 231 23 chr4 65815377 65815620 -118473042 + L1MC4a LINE L1 5555 5746 -2062 1416 215 19 16 chr4 65815620 65815931 -118472731 + AluJb SINE Alu 1 312 0 533 271 231 23 chr4 65815931 65816155 -118472507 + L1MC4a LINE L1 5746 5922 -1886 791 251 6 0 chr4 65816155 65816322 -118472340 - FAM SINE Alu -6 169 2 533 271 231 23 chr4 65816322 65816333 -118472329 + L1MC4a LINE L1 5922 6134 -1674 446 318 91 18 chr4 65816848 65817068 -118471594 - MIR SINE MIR -24 238 3 2296 185 58 63 chr4 65817774 65818413 -118470249 + MER92B LTR ERV1 1 636 0 237 322 20 67 chr4 65818772 65818921 -118469741 + L2 LINE L2 3172 3313 0 335 360 0 0 chr4 65819250 65819350 -118469312 - MER91B DNA MER1_type 0 190 91 250 277 48 121 chr4 65819326 65819492 -118469170 - MER91B DNA MER1_type -24 166 13 * 505 277 47 106 chr4 65819493 65820026 -118468636 + MLT1G LTR MaLR 89 526 -4 1551 144 11 33 chr4 65821024 65821377 -118467285 - MER4A LTR ERV1 0 664 261 551 152 10 20 chr4 65821377 65821476 -118467186 - MER4A LTR ERV1 -566 98 1 13963 115 52 18 chr4 65821482 65823869 -118464793 - MER4A-int LTR ERV1 -2 6596 4131 1371 71 169 4 chr4 65823869 65824223 -118464439 - MLT2A2 LTR ERVL 0 453 1 1647 132 27 14 chr4 65824223 65824518 -118464144 - MER4A-int LTR ERV1 -2463 4135 3837 787 190 51 42 chr4 65824512 65824749 -118463913 - MER4A-int LTR ERV1 -2912 3686 3448 * 6046 95 32 12 chr4 65824757 65825718 -118462944 - MER4A-int LTR ERV1 -4121 2477 1498 3102 187 99 3 chr4 65825722 65826310 -118462352 - ERVL-B2 LTR ERVL -2034 3730 3087 * 7168 187 61 84 chr4 65826306 65828111 -118460551 - ERVL-B2 LTR ERVL -3998 1766 4 511 156 11 0 chr4 65828130 65828230 -118460432 - MSTB LTR MaLR 0 432 296 931 233 0 0 chr4 65828326 65828502 -118460160 - MSTB LTR MaLR -250 176 1 * 2655 161 17 35 chr4 65828502 65828961 -118459701 - MLT2B2 LTR ERVL -11 504 55 1465 174 0 0 chr4 65828961 65829197 -118459465 - MER46A DNA MER2_type 0 236 1 325 113 57 0 chr4 65829201 65829254 -118459408 - MLT2B2 LTR ERVL -464 56 1 2089 71 4 8 chr4 65829744 65830010 -118458652 - AluSq SINE Alu -13 300 36 2125 276 53 34 chr4 65830238 65831091 -118457571 + L1MCb LINE L1 1 869 -5176 1833 213 25 10 chr4 65831090 65831484 -118457178 + L1MC2 LINE L1 5470 5869 -475 * 749 168 0 0 chr4 65832073 65832192 -118456470 - FLAM_C SINE Alu -24 119 1 635 284 75 22 chr4 65832236 65832557 -118456105 - L1M4 LINE L1 -2577 3569 3232 979 220 9 5 chr4 65832686 65832900 -118455762 + L1MC2 LINE L1 5965 6179 -165 897 138 0 19 chr4 65832900 65833059 -118455603 - AluSg/x SINE Alu 0 310 155 23 78 0 0 chr4 65833818 65833869 -118454793 + AT_rich Low_complexity Low_complexity 1 51 0 21 57 0 0 chr4 65835518 65835553 -118453109 + AT_rich Low_complexity Low_complexity 1 35 0 202 282 84 0 chr4 65835899 65835970 -118452692 - L2 LINE L2 -8 3305 3229 202 283 8 133 chr4 65835995 65836115 -118452547 + L2 LINE L2 3163 3267 -5 226 219 0 0 chr4 65836148 65836189 -118452473 + polypurine Low_complexity Low_complexity 4 44 0 2455 52 0 7 chr4 65838448 65838755 -118449907 - AluY SINE Alu -6 305 1 213 333 52 33 chr4 65838765 65838918 -118449744 + L2 LINE L2 2364 2519 -795 275 339 9 70 chr4 65838949 65839176 -118449486 + L2 LINE L2 2622 2834 -480 186 352 57 9 chr4 65839548 65839653 -118449009 + L2 LINE L2 3201 3310 -3 26 0 0 0 chr4 65840228 65840254 -118448408 + AT_rich Low_complexity Low_complexity 1 26 0 311 243 23 22 chr4 65840405 65840519 -118448143 + L1MC/D LINE L1 5657 5771 -350 1005 124 0 0 chr4 65840832 65840985 -118447677 - L1MA2 LINE L1 0 6304 6152 639 336 42 5 chr4 65841332 65841549 -118447113 + MIR SINE MIR 38 262 0 363 321 192 9 chr4 65841657 65841881 -118446781 - L2 LINE L2 -6 3266 3002 7268 47 4 0 chr4 65843274 65844301 -118444361 - L1PA5 LINE L1 -5 6149 5122 365 0 0 0 chr4 65844301 65844345 -118444317 + L1PA5 LINE L1 5081 5124 -1022 315 304 35 35 chr4 65844406 65844521 -118444141 - L2 LINE L2 -2892 422 308 234 0 0 0 chr4 65847286 65847312 -118441350 + (CA)n Simple_repeat Simple_repeat 2 27 0 240 122 0 0 chr4 65847968 65848009 -118440653 + (CA)n Simple_repeat Simple_repeat 2 42 0 354 236 67 113 chr4 65848052 65848336 -118440326 + L1MEd LINE L1 789 1059 -5060 798 306 50 19 chr4 65848541 65848963 -118439699 + L1ME3 LINE L1 5407 5838 -324 231 114 0 0 chr4 65849058 65849093 -118439569 + (T)n Simple_repeat Simple_repeat 1 35 0 43 47 0 0 chr4 65849432 65849496 -118439166 + AT_rich Low_complexity Low_complexity 1 64 0 285 259 28 9 chr4 65849801 65849909 -118438753 + (TA)n Simple_repeat Simple_repeat 1 110 0 1770 110 28 0 chr4 65849954 65850236 -118438426 - L1MA3 LINE L1 0 6305 6016 274 303 107 0 chr4 65850767 65850889 -118437773 - MIR SINE MIR -4 258 124 2472 69 0 0 chr4 65852263 65852568 -118436094 + AluY SINE Alu 1 305 -6 239 322 245 29 chr4 65852615 65852994 -118435668 - L2 LINE L2 -668 2646 2186 1474 170 0 17 chr4 65853541 65853782 -118434880 - AluJo SINE Alu -13 299 63 959 203 0 16 chr4 65853783 65853965 -118434697 - AluJo SINE Alu -133 179 1 2409 58 0 19 chr4 65854325 65854636 -118434026 - AluY SINE Alu -6 305 1 25 31 0 0 chr4 65854896 65854928 -118433734 + AT_rich Low_complexity Low_complexity 1 32 0 21 71 0 0 chr4 65855182 65855224 -118433438 + AT_rich Low_complexity Low_complexity 1 42 0 1283 241 111 6 chr4 65855883 65856235 -118432427 + MSTD LTR MaLR 1 389 -7 756 216 159 38 chr4 65856296 65856616 -118432046 + L1MC3 LINE L1 6896 7254 -531 965 253 67 32 chr4 65857069 65857531 -118431131 + L1M4 LINE L1 3092 3569 -2577 728 185 0 0 chr4 65857575 65857694 -118430968 + FLAM_C SINE Alu 1 119 -24 21 57 0 0 chr4 65858015 65858050 -118430612 + AT_rich Low_complexity Low_complexity 1 35 0 357 313 82 7 chr4 65858050 65858197 -118430465 - MIR SINE MIR -14 248 91 978 175 0 24 chr4 65858304 65858470 -118430192 - FRAM SINE Alu -15 161 1 592 186 42 0 chr4 65859462 65859580 -118429082 + FLAM_C SINE Alu 1 123 -20 25 31 0 0 chr4 65859595 65859627 -118429035 + AT_rich Low_complexity Low_complexity 1 32 0 356 385 97 43 chr4 65860014 65860313 -118428349 - L2 LINE L2 -51 3221 2907 413 336 128 61 chr4 65860789 65861706 -118426956 - L2 LINE L2 -602 2712 1735 260 328 88 36 chr4 65862102 65862294 -118426368 - MIR SINE MIR -16 246 45 598 232 79 105 chr4 65862332 65862685 -118425977 + LTR4 LTR ERV1 14 357 -239 540 265 149 24 chr4 65862782 65863031 -118425631 + LTR4 LTR ERV1 317 596 0 18350 204 26 29 chr4 65863031 65866745 -118421917 + HERV3 LTR ERV1 1 3704 -4722 2620 83 0 0 chr4 65866745 65867083 -118421579 - LTR12 LTR ERV1 0 714 377 334 291 17 0 chr4 65867084 65867201 -118421461 - LTR30 LTR ERV1 -80 642 524 19112 101 35 14 chr4 65867209 65869982 -118418680 - HERV9 LTR ERV1 -5512 2887 58 4280 63 8 186 chr4 65870006 65870843 -118417819 - LTR12 LTR ERV1 0 688 1 7314 190 6 6 chr4 65870844 65872110 -118416552 + HERV3 LTR ERV1 3702 4967 -3459 666 253 145 20 chr4 65872119 65872368 -118416294 + LTR4 LTR ERV1 317 596 0 1360 174 0 37 chr4 65872829 65873071 -118415591 - AluJo SINE Alu -69 243 11 393 275 75 0 chr4 65873076 65873196 -118415466 + MIR SINE MIR 65 193 -69 5271 74 6 4 chr4 65874377 65875065 -118413597 + L1PA7 LINE L1 5458 6146 -8 277 372 22 22 chr4 65875121 65875258 -118413404 - MIR3 SINE MIR -41 167 31 21 36 0 0 chr4 65876123 65876151 -118412511 + AT_rich Low_complexity Low_complexity 1 28 0 417 263 0 32 chr4 65876482 65876577 -118412085 + MIR SINE MIR 1 92 -170 4199 175 15 6 chr4 65876706 65877557 -118411105 + MER54A LTR ERVL 6 901 0 621 100 0 0 chr4 65878050 65878140 -118410522 + (TA)n Simple_repeat Simple_repeat 2 91 0 405 280 149 12 chr4 65878476 65878644 -118410018 - MIR SINE MIR -65 197 7 410 347 127 45 chr4 65878649 65879052 -118409610 - L2 LINE L2 -752 2562 2127 182 244 24 0 chr4 65879314 65879355 -118409307 + L2 LINE L2 2710 2751 -563 277 241 188 62 chr4 65879421 65879533 -118409129 + L2 LINE L2 3188 3313 0 280 265 51 31 chr4 65880186 65880284 -118408378 - MIR3 SINE MIR -1 207 108 4681 101 11 1 chr4 65880596 65881250 -118407412 - PABL_A LTR ERV1 0 660 1 26 74 0 0 chr4 65882358 65882412 -118406250 + AT_rich Low_complexity Low_complexity 1 54 0 27 0 0 0 chr4 65882863 65882890 -118405772 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr4 65882991 65883013 -118405649 + AT_rich Low_complexity Low_complexity 1 22 0 1115 193 9 9 chr4 65884161 65884374 -118404288 + AluJo SINE Alu 87 299 -13 276 307 11 0 chr4 65885089 65885177 -118403485 - MIR3 SINE MIR -1 207 119 44 20 0 0 chr4 65885949 65886000 -118402662 + AT_rich Low_complexity Low_complexity 1 51 0 1022 252 55 16 chr4 65886000 65886309 -118402353 - L1ME3A LINE L1 -8 6162 5842 550 269 8 0 chr4 65886381 65886511 -118402151 + MER5A DNA MER1_type 55 185 -4 1462 254 67 50 chr4 65886528 65886573 -118402089 - L1ME3A LINE L1 -370 5800 5757 2224 126 27 53 chr4 65886573 65886947 -118401715 - THE1B LTR MaLR 0 364 1 10696 119 8 8 chr4 65886947 65888528 -118400134 - THE1B-int LTR MaLR 0 1580 1 2296 129 27 30 chr4 65888528 65888893 -118399769 - THE1B LTR MaLR 0 364 1 1462 254 67 50 chr4 65888893 65889633 -118399029 - L1ME3A LINE L1 -412 5758 5008 732 245 70 108 chr4 65889770 65890142 -118398520 - MER57A LTR ERV1 -3 400 43 1004 288 74 17 chr4 65890156 65890628 -118398034 - L1ME3A LINE L1 -1804 4342 3844 305 164 0 0 chr4 65890628 65890683 -118397979 - AluSx SINE Alu -4 304 250 1355 126 0 6 chr4 65890684 65890867 -118397795 - AluSx SINE Alu -128 184 3 1072 268 82 46 chr4 65890899 65891330 -118397332 - L1ME3A LINE L1 -2207 3939 3476 207 0 0 0 chr4 65891330 65891353 -118397309 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1072 268 82 46 chr4 65891353 65891552 -118397110 - L1ME3A LINE L1 -2670 3476 3286 1512 215 0 20 chr4 65891555 65891848 -118396814 - AluJo SINE Alu -14 298 12 182 339 0 0 chr4 65892520 65892576 -118396086 - L2 LINE L2 -303 2969 2914 1471 173 20 27 chr4 65892961 65893256 -118395406 - AluJo SINE Alu -16 296 4 23 68 0 0 chr4 65894053 65894097 -118394565 + AT_rich Low_complexity Low_complexity 1 44 0 361 212 35 62 chr4 65894134 65894247 -118394415 + FLAM_C SINE Alu 2 111 -22 21 0 0 0 chr4 65894997 65895018 -118393644 + AT_rich Low_complexity Low_complexity 1 21 0 228 67 0 0 chr4 65895303 65895333 -118393329 + (T)n Simple_repeat Simple_repeat 1 30 0 1932 278 53 43 chr4 65895343 65896468 -118392194 - L1M3c LINE L1 -4857 2180 7 2177 192 24 48 chr4 65896520 65897025 -118391637 - MLT1B-int LTR MaLR -878 493 1 1701 191 48 26 chr4 65897025 65897403 -118391259 - MLT1B LTR MaLR 0 390 5 226 398 34 0 chr4 65897935 65898111 -118390551 + L2 LINE L2 2688 2869 -445 2110 185 60 5 chr4 65898505 65898905 -118389757 - MSTB LTR MaLR 0 426 5 2414 69 0 10 chr4 65898950 65899255 -118389407 + AluY SINE Alu 1 302 -9 2570 29 61 0 chr4 65899956 65900269 -118388393 + L1PA5 LINE L1 5450 5781 -373 1248 40 0 0 chr4 65900269 65900416 -118388246 + L1PA5 LINE L1 5999 6147 -7 24 32 0 0 chr4 65900431 65900462 -118388200 + AT_rich Low_complexity Low_complexity 1 31 0 306 273 148 0 chr4 65901720 65901848 -118386814 - L2 LINE L2 -1208 2106 1960 22 35 0 0 chr4 65902138 65902167 -118386495 + AT_rich Low_complexity Low_complexity 1 29 0 400 127 0 42 chr4 65902385 65902456 -118386206 + Alu SINE Alu 233 300 -1 2484 50 0 3 chr4 65902936 65903237 -118385425 + AluY SINE Alu 1 300 -11 865 211 46 31 chr4 65903747 65903941 -118384721 + MER20 DNA MER1_type 4 200 -19 324 258 21 11 chr4 65904164 65904257 -118384405 - MER103 DNA DNA -72 94 1 312 313 0 21 chr4 65904285 65904381 -118384281 - L1MC4 LINE L1 -1335 6707 6614 2018 132 10 0 chr4 65904404 65904699 -118383963 - AluSx SINE Alu -14 298 1 413 128 0 26 chr4 65905884 65905962 -118382700 + L1MC1 LINE L1 6258 6333 0 322 316 58 12 chr4 65906036 65906207 -118382455 - MIR SINE MIR -2 260 82 571 121 0 0 chr4 65906248 65906331 -118382331 - FAM SINE Alu -7 178 96 914 253 167 38 chr4 65906581 65907336 -118381326 - Charlie7 DNA MER1_type -1 2611 1760 304 308 41 77 chr4 65907574 65907769 -118380893 - Charlie7 DNA MER1_type -2318 294 107 258 242 20 10 chr4 65907784 65907883 -118380779 + (TA)n Simple_repeat Simple_repeat 1 100 0 249 139 0 0 chr4 65907893 65907936 -118380726 + (TG)n Simple_repeat Simple_repeat 2 44 0 347 125 0 18 chr4 65907939 65907995 -118380667 + Tigger5 DNA MER2_type 1 55 -2268 281 231 0 15 chr4 65907963 65908028 -118380634 + Tigger5 DNA MER2_type 2251 2314 -9 * 437 237 0 11 chr4 65908049 65908142 -118380520 - Tigger5 DNA MER2_type -2231 92 1 459 212 0 0 chr4 65908154 65908239 -118380423 + Tigger5 DNA MER2_type 2239 2323 0 1546 194 101 11 chr4 65909123 65909489 -118379173 + L1MD1 LINE L1 5825 6223 -19 1286 233 7 24 chr4 65909508 65909800 -118378862 + AluJo SINE Alu 1 287 -25 384 80 0 0 chr4 65910087 65910137 -118378525 - MSTD LTR MaLR -346 50 1 3460 222 179 27 chr4 65912841 65913844 -118374818 - MER52A LTR ERV1 -483 1272 117 3103 168 23 5 chr4 65914782 65915352 -118373310 - LTR22 LTR ERVK 0 580 1 23 33 0 0 chr4 65916789 65916819 -118371843 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr4 65916911 65916936 -118371726 + AT_rich Low_complexity Low_complexity 1 25 0 254 29 29 0 chr4 65916980 65917015 -118371647 + (TG)n Simple_repeat Simple_repeat 1 36 0 180 158 0 0 chr4 65917015 65917053 -118371609 + GA-rich Low_complexity Low_complexity 2 39 0 422 283 154 13 chr4 65917717 65918035 -118370627 - L1M4 LINE L1 -1641 4505 4143 3884 183 68 2 chr4 65918053 65919082 -118369580 - L1MC1 LINE L1 -269 6344 5249 353 253 95 88 chr4 65919351 65919636 -118369026 - L1MC1 LINE L1 -3961 2465 2179 600 109 0 0 chr4 65919640 65919732 -118368930 + L1PA11 LINE L1 6083 6174 0 201 231 51 39 chr4 65920969 65921047 -118367615 - MIR SINE MIR -45 217 139 214 148 80 11 chr4 65922218 65922306 -118366356 + (TA)n Simple_repeat Simple_repeat 2 95 0 313 258 0 0 chr4 65922453 65922519 -118366143 - HERV16 LTR ERVL -4375 621 556 1995 34 0 0 chr4 65922675 65922914 -118365748 + L1PA5 LINE L1 3949 4187 -1959 4886 32 0 3 chr4 65922914 65923500 -118365162 + L1PA5 LINE L1 5570 6153 -1 5368 158 31 18 chr4 65923540 65924944 -118363718 + L1PA15 LINE L1 4744 6163 -2 304 339 42 6 chr4 65925099 65925264 -118363398 - HERV16 LTR ERVL -4747 249 79 456 323 12 12 chr4 65925300 65925467 -118363195 - LTR16C LTR ERVL -8 483 317 37 39 0 0 chr4 65925521 65925572 -118363090 + AT_rich Low_complexity Low_complexity 1 51 0 231 175 0 95 chr4 65925828 65925891 -118362771 + A-rich Low_complexity Low_complexity 4 60 0 1125 286 113 33 chr4 65926010 65927637 -118361025 - L1MEc LINE L1 -3534 2681 972 336 294 133 48 chr4 65927940 65928112 -118360550 - L1MEc LINE L1 -5453 943 787 246 116 0 0 chr4 65928112 65928155 -118360507 + (TATG)n Simple_repeat Simple_repeat 2 44 0 336 294 133 48 chr4 65928155 65928479 -118360183 - L1MEc LINE L1 -5609 787 405 27 29 0 0 chr4 65928866 65928900 -118359762 + AT_rich Low_complexity Low_complexity 1 34 0 3813 58 11 4 chr4 65929833 65930363 -118358299 + L1P LINE L1 4870 5403 -743 6207 141 58 14 chr4 65930475 65932631 -118356031 - L1MA1 LINE L1 -27 7694 5434 2089 150 114 8 chr4 65932631 65933018 -118355644 + MSTA LTR MaLR 1 428 0 6207 141 58 14 chr4 65933018 65933049 -118355613 - L1MA1 LINE L1 -2287 5434 5406 16773 200 31 49 chr4 65933755 65937978 -118350684 - L1MA1 LINE L1 -2164 5401 1297 1671 188 10 10 chr4 65937978 65938287 -118350375 - AluJb SINE Alu -3 309 1 16773 200 31 49 chr4 65938287 65939546 -118349116 - L1MA1 LINE L1 -6268 1297 17 28069 46 37 2 chr4 65940502 65944058 -118344604 - L1P LINE L1 -2464 3682 2 17278 66 0 4 chr4 65944060 65946353 -118342309 - L1P LINE L1 -2955 3191 907 5295 147 40 0 chr4 65946340 65947182 -118341480 + L1P LINE L1 31 906 -5240 * 8677 150 44 5 chr4 65947181 65947300 -118341362 - L1PBa LINE L1 -3372 3490 3377 441 0 0 0 chr4 65947300 65947349 -118341313 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 8677 150 44 5 chr4 65947349 65949309 -118339353 - L1PBa LINE L1 -3485 3377 1330 374 206 14 0 chr4 65949320 65949393 -118339269 - L1PBa LINE L1 -5700 1163 1090 892 191 16 11 chr4 65949398 65949587 -118339075 - L1PBa LINE L1 -5821 1042 853 690 216 66 93 chr4 65949589 65949922 -118338740 + pTR5 LTR ERV1 745 1068 -1370 4157 101 30 143 chr4 65949945 65950270 -118338392 + LTR12 LTR ERV1 1 361 -465 270 0 0 0 chr4 65950270 65950300 -118338362 + (TG)n Simple_repeat Simple_repeat 2 31 0 4157 101 30 143 chr4 65950300 65950905 -118337757 + LTR12 LTR ERV1 361 826 0 951 221 29 12 chr4 65950905 65951149 -118337513 - L1PBa LINE L1 -6007 856 609 226 235 0 0 chr4 65951187 65951238 -118337424 - L1PBa LINE L1 -6323 540 490 196 309 43 53 chr4 65951356 65951450 -118337212 - MIR SINE MIR -164 98 6 3192 130 24 24 chr4 65951712 65951833 -118336829 - MER41A LTR ERV1 0 635 515 1746 147 4 8 chr4 65951833 65952098 -118336564 + AluSx SINE Alu 1 264 -48 3192 130 24 24 chr4 65952098 65952588 -118336074 - MER41A LTR ERV1 -120 515 1 11454 124 33 14 chr4 65952588 65953493 -118335169 - MER41A-int LTR ERV1 -2 5944 5058 2110 121 20 3 chr4 65953493 65953790 -118334872 + AluSq SINE Alu 1 302 -11 11454 124 33 14 chr4 65953790 65955419 -118333243 - MER41A-int LTR ERV1 -888 5058 2566 2646 140 31 21 chr4 65955402 65955924 -118332738 - MER41-int LTR ERV1 -3744 4072 3546 * 195 42 0 0 chr4 65955947 65955971 -118332691 + (CA)n Simple_repeat Simple_repeat 1 24 0 4640 155 37 31 chr4 65955972 65956901 -118331761 - MER41-int LTR ERV1 -4866 1080 63 659 78 21 4 chr4 65956901 65957044 -118331618 - MER41A LTR ERV1 -353 201 1 4056 99 2 0 chr4 65957119 65957672 -118330990 - MER41A LTR ERV1 0 554 1 229 304 0 0 chr4 65957680 65957736 -118330926 + MER91B DNA MER1_type 14 69 -121 211 350 30 10 chr4 65958710 65958810 -118329852 + MIR SINE MIR 53 154 -108 667 250 16 27 chr4 65958991 65959179 -118329483 + MER5A DNA MER1_type 3 188 -1 397 240 64 8 chr4 65959585 65959710 -118328952 - MER94 DNA DNA -2 132 1 24 53 0 0 chr4 65959873 65959911 -118328751 + AT_rich Low_complexity Low_complexity 1 38 0 26 30 0 0 chr4 65960329 65960362 -118328300 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chr4 65961090 65961123 -118327539 + AT_rich Low_complexity Low_complexity 1 33 0 337 167 11 67 chr4 65961180 65961270 -118327392 + L1MA2 LINE L1 6219 6303 -1 180 313 12 0 chr4 65961439 65961522 -118327140 - MIR SINE MIR -1 261 178 2945 185 56 9 chr4 65961525 65962164 -118326498 + L1MB2 LINE L1 5503 6171 0 325 316 99 13 chr4 65962176 65962328 -118326334 - MIR SINE MIR -86 176 12 7385 55 9 17 chr4 65963104 65964725 -118323937 - SVA Other Other -683 1384 51 324 0 0 0 chr4 65964725 65964761 -118323901 + (GGGAGA)n Simple_repeat Simple_repeat 2 37 0 204 111 0 0 chr4 65965408 65965444 -118323218 + (TG)n Simple_repeat Simple_repeat 1 36 0 209 322 128 39 chr4 65966817 65966997 -118321665 + MIR SINE MIR 25 220 -42 236 283 81 71 chr4 65967135 65967234 -118321428 - MER5A DNA MER1_type -80 109 10 778 213 75 34 chr4 65969038 65969108 -118319554 + MLT2D LTR ERVL 1 67 -347 330 45 0 0 chr4 65969108 65969152 -118319510 + (TG)n Simple_repeat Simple_repeat 1 44 0 778 213 75 34 chr4 65969152 65969320 -118319342 + MLT2D LTR ERVL 67 249 -165 864 260 68 49 chr4 65969355 65969768 -118318894 - MLT2B1 LTR ERVL -92 391 1 1172 240 106 44 chr4 65969803 65970481 -118318181 + L1MEc LINE L1 800 1575 -1001 2099 171 59 0 chr4 65972043 65972417 -118316245 - MER57A LTR ERV1 -7 396 1 246 341 62 23 chr4 65972785 65972961 -118315701 - L2 LINE L2 -802 2512 2330 277 235 59 47 chr4 65973280 65973450 -118315212 - MER53 DNA DNA -3 186 15 275 345 35 0 chr4 65973498 65973585 -118315077 - L2 LINE L2 -34 3279 3190 447 305 19 26 chr4 65974248 65974402 -118314260 - MIR SINE MIR -108 154 2 22 0 0 0 chr4 65974716 65974738 -118313924 + AT_rich Low_complexity Low_complexity 1 22 0 2955 279 51 13 chr4 65974951 65976337 -118312325 - L1MDa LINE L1 -2571 3969 2531 2418 293 5 8 chr4 65976347 65976961 -118311701 + L1PA15 LINE L1 1 612 -6175 5662 249 24 49 chr4 65977235 65979941 -118308721 + L1PA15 LINE L1 1343 4016 -2781 243 204 0 19 chr4 65979949 65980003 -118308659 + MER52C LTR ERV1 8 60 -1218 3987 190 51 43 chr4 65980357 65981870 -118306792 + MER52A LTR ERV1 59 1755 0 5624 269 126 6 chr4 65981890 65983607 -118305055 + L1PA15 LINE L1 4094 6017 -780 816 145 48 14 chr4 65983604 65983749 -118304913 + L1PA15 LINE L1 6251 6400 -417 * 1722 177 35 27 chr4 65983749 65984121 -118304541 + THE1C LTR MaLR 1 375 0 9296 122 53 43 chr4 65984121 65985679 -118302983 + THE1C-int LTR MaLR 1 1574 -6 1971 143 32 24 chr4 65985684 65986056 -118302606 + THE1C LTR MaLR 1 375 0 2209 184 14 7 chr4 65986056 65986474 -118302188 + L1PA15 LINE L1 6396 6816 0 3059 250 50 26 chr4 65986509 65987716 -118300946 - L1MDa LINE L1 -4047 2493 1258 3973 191 25 13 chr4 65987776 65988521 -118300141 - L1M1 LINE L1 -6762 803 50 477 175 21 0 chr4 65988529 65988626 -118300036 - L1MDa LINE L1 -5292 1251 1153 531 265 11 63 chr4 65988940 65989129 -118299533 - L1MDa LINE L1 -6195 345 167 2343 59 28 0 chr4 65989211 65989500 -118299162 + AluY SINE Alu 1 297 -14 236 292 15 15 chr4 65991783 65991848 -118296814 + L2 LINE L2 3183 3247 -25 2013 162 6 40 chr4 65992870 65993221 -118295441 - MER1B DNA MER1_type 0 339 1 22 56 0 0 chr4 65993476 65993512 -118295150 + AT_rich Low_complexity Low_complexity 1 36 0 256 224 13 40 chr4 65994856 65994912 -118293750 + (TATATG)n Simple_repeat Simple_repeat 2 57 -18 720 234 163 19 chr4 65994912 65995121 -118293541 + MER8 DNA MER2_type 1 239 0 256 224 13 40 chr4 65995121 65995140 -118293522 + (TATATG)n Simple_repeat Simple_repeat 57 75 0 306 333 113 20 chr4 65995402 65995597 -118293065 + MIR SINE MIR 16 228 -34 306 87 0 0 chr4 65995647 65995693 -118292969 + (TTCC)n Simple_repeat Simple_repeat 1 46 0 453 36 0 0 chr4 65998246 65998301 -118290361 + (TA)n Simple_repeat Simple_repeat 2 56 0 17989 42 3 1 chr4 65998301 66001353 -118287309 - L1PA5 LINE L1 -7 6147 3132 604 271 127 13 chr4 66003465 66003694 -118284968 + MIR SINE MIR 2 256 -6 23 0 0 0 chr4 66004127 66004150 -118284512 + AT_rich Low_complexity Low_complexity 1 23 0 766 167 15 0 chr4 66004150 66004282 -118284380 - AluJo SINE Alu -178 134 1 21 36 0 0 chr4 66004695 66004723 -118283939 + AT_rich Low_complexity Low_complexity 1 28 0 258 306 37 28 chr4 66005465 66005573 -118283089 - MER5A DNA MER1_type -37 152 44 1805 257 68 51 chr4 66006253 66007116 -118281546 - L1ME3A LINE L1 -1 6169 5292 227 324 0 0 chr4 66007131 66007205 -118281457 + (TATATG)n Simple_repeat Simple_repeat 2 75 0 335 304 76 19 chr4 66007411 66007569 -118281093 - L1ME3A LINE L1 -920 5226 5060 1806 282 131 25 chr4 66007573 66009259 -118279403 - L1ME3A LINE L1 -1098 5048 3184 2254 114 0 0 chr4 66009387 66009684 -118278978 + AluSx SINE Alu 3 299 -13 1175 160 49 0 chr4 66009685 66009910 -118278752 - L1MA4 LINE L1 -12 6288 6053 1522 182 7 4 chr4 66009988 66010257 -118278405 - AluJo SINE Alu -9 303 34 305 306 65 0 chr4 66010346 66010470 -118278192 - MIR SINE MIR -111 151 20 307 137 0 5 chr4 66010664 66010731 -118277931 + L1MA9 LINE L1 6225 6290 -8 830 137 8 8 chr4 66011061 66011192 -118277470 - THE1C LTR MaLR 0 375 245 1558 175 28 108 chr4 66011295 66011683 -118276979 + LTR32 LTR ERVL 115 471 0 29 0 0 0 chr4 66011806 66011835 -118276827 + AT_rich Low_complexity Low_complexity 1 29 0 236 324 27 0 chr4 66011835 66011909 -118276753 - MIR SINE MIR -179 83 8 230 250 21 83 chr4 66012299 66012395 -118276267 + MER102a DNA MER1_type 231 320 -10 2526 132 0 0 chr4 66012657 66013021 -118275641 + THE1B LTR MaLR 1 364 0 10158 114 23 28 chr4 66013021 66014606 -118274056 + THE1B-int LTR MaLR 1 1576 -4 2539 114 0 8 chr4 66014610 66014977 -118273685 + THE1B LTR MaLR 1 364 0 201 321 184 0 chr4 66014994 66015162 -118273500 + MIR SINE MIR 64 262 0 527 294 52 5 chr4 66015217 66015411 -118273251 + MIR SINE MIR 56 258 -4 263 272 155 0 chr4 66016839 66016959 -118271703 + MIR3 SINE MIR 14 150 -77 2460 69 7 0 chr4 66017200 66017505 -118271157 + AluY SINE Alu 3 309 -2 22 35 0 0 chr4 66017965 66017994 -118270668 + AT_rich Low_complexity Low_complexity 1 29 0 261 57 0 0 chr4 66018279 66018314 -118270348 + (CA)n Simple_repeat Simple_repeat 2 36 0 1645 259 141 2 chr4 66018324 66018792 -118269870 - MLT1G LTR MaLR 0 590 58 581 343 25 29 chr4 66019497 66019771 -118268891 + MER115 DNA AcHobo 148 420 -273 1071 157 0 0 chr4 66020294 66020460 -118268202 - AluSg/x SINE Alu -10 300 135 520 330 102 0 chr4 66021659 66021856 -118266806 - L2 LINE L2 -2086 1228 1012 2367 134 10 13 chr4 66021982 66022369 -118266293 - L1P4 LINE L1 -384 5782 5397 1070 214 0 23 chr4 66022369 66022589 -118266073 + AluJo SINE Alu 86 300 -12 3873 216 38 5 chr4 66022602 66023558 -118265104 - L1P4 LINE L1 -749 5397 4411 1716 134 0 0 chr4 66023776 66024023 -118264639 + AluSx SINE Alu 59 305 -7 468 396 84 10 chr4 66024025 66024323 -118264339 + L1PA13 LINE L1 789 1108 -6466 2494 281 24 3 chr4 66024674 66025412 -118263250 + L1PA13 LINE L1 2184 2937 -4644 9071 246 19 56 chr4 66025413 66026028 -118262634 + L1PA13 LINE L1 3539 4175 -3409 2520 112 0 29 chr4 66026028 66026403 -118262259 + THE1B LTR MaLR 1 364 0 9071 246 19 56 chr4 66026403 66026494 -118262168 + L1PA13 LINE L1 4175 4268 -3316 1642 140 43 89 chr4 66026494 66026887 -118261775 - THE1C LTR MaLR 0 375 1 9071 246 19 56 chr4 66026887 66027119 -118261543 + L1PA13 LINE L1 4268 4507 -3077 495 167 0 0 chr4 66027119 66027197 -118261465 + AluSq SINE Alu 1 78 -235 15959 52 2 0 chr4 66027198 66029978 -118258684 + L1PA5 LINE L1 3368 6151 -3 1477 141 5 0 chr4 66029980 66030193 -118258469 + AluSq SINE Alu 76 289 -24 218 56 28 0 chr4 66030200 66030236 -118258426 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 9071 246 19 56 chr4 66030236 66032429 -118256233 + L1PA13 LINE L1 4514 6643 -941 5062 192 26 6 chr4 66032424 66033834 -118254828 + L1MA4 LINE L1 4861 6291 -9 * 242 95 24 0 chr4 66035199 66035241 -118253421 + (TG)n Simple_repeat Simple_repeat 2 44 0 322 297 45 27 chr4 66035890 66036001 -118252661 + L1M4 LINE L1 4034 4146 -2000 1879 109 73 25 chr4 66036286 66036644 -118252018 + THE1C LTR MaLR 1 375 0 27 0 0 0 chr4 66036977 66037004 -118251658 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr4 66037023 66037046 -118251616 + AT_rich Low_complexity Low_complexity 1 23 0 4406 144 12 0 chr4 66087046 66087724 -118200938 + L1P LINE L1 221 906 -5240 * 9419 186 56 58 chr4 66087723 66087842 -118200820 - L1PBa LINE L1 -3372 3490 3372 441 0 0 0 chr4 66087842 66087891 -118200771 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 9419 186 56 58 chr4 66087891 66090487 -118198175 - L1PBa LINE L1 -3490 3372 785 4128 102 30 143 chr4 66090487 66090812 -118197850 + LTR12 LTR ERV1 1 361 -465 270 0 0 0 chr4 66090812 66090842 -118197820 + (TG)n Simple_repeat Simple_repeat 2 31 0 4128 102 30 143 chr4 66090842 66091447 -118197215 + LTR12 LTR ERV1 361 826 0 9419 186 56 58 chr4 66091447 66092226 -118196436 - L1PBa LINE L1 -6077 785 6 852 300 21 8 chr4 66092256 66092499 -118196163 + MIR SINE MIR 6 251 -11 311 319 36 14 chr4 66092662 66092800 -118195862 + MLT1H LTR MaLR 105 245 -304 1520 182 67 93 chr4 66092925 66093343 -118195319 - MLT2D LTR ERVL -7 407 1 541 260 23 17 chr4 66093346 66093519 -118195143 + MLT1H LTR MaLR 376 549 0 288 53 0 0 chr4 66094171 66094209 -118194453 + (TG)n Simple_repeat Simple_repeat 1 38 0 44 56 0 0 chr4 66094965 66095037 -118193625 + AT_rich Low_complexity Low_complexity 1 72 0 22 35 0 0 chr4 66095451 66095480 -118193182 + AT_rich Low_complexity Low_complexity 1 29 0 30 83 0 0 chr4 66095893 66095965 -118192697 + AT_rich Low_complexity Low_complexity 1 72 0 22 35 0 0 chr4 66096010 66096039 -118192623 + AT_rich Low_complexity Low_complexity 1 29 0 2077 104 45 0 chr4 66096039 66096327 -118192335 + AluSq SINE Alu 1 301 -12 1947 220 115 27 chr4 66096419 66097020 -118191642 - MER50 LTR ERV1 0 734 81 340 146 12 49 chr4 66097198 66097280 -118191382 - L1MA2 LINE L1 0 6304 6226 22 109 0 0 chr4 66097771 66097863 -118190799 + AT_rich Low_complexity Low_complexity 1 92 0 2175 172 26 70 chr4 66098187 66098647 -118190015 - MER61E LTR ERV1 -38 531 92 245 217 38 104 chr4 66098645 66098693 -118189969 - LTR25 LTR ERV1 -448 346 307 * 198 0 0 0 chr4 66098693 66098715 -118189947 + (TATATG)n Simple_repeat Simple_repeat 6 27 0 245 217 38 104 chr4 66098715 66098772 -118189890 - LTR25 LTR ERV1 -487 307 248 434 186 0 41 chr4 66098783 66098880 -118189782 - MER61E LTR ERV1 -476 93 1 643 150 7 95 chr4 66099572 66099719 -118188943 - L1PB4 LINE L1 -2 6154 6021 310 316 34 45 chr4 66099722 66099899 -118188763 + MIR SINE MIR 80 254 -8 27 29 0 0 chr4 66100052 66100086 -118188576 + AT_rich Low_complexity Low_complexity 1 34 0 220 222 40 10 chr4 66100133 66100232 -118188430 + (TA)n Simple_repeat Simple_repeat 2 103 0 246 323 90 18 chr4 66103034 66103201 -118185461 - L2 LINE L2 -886 2428 2250 223 277 24 24 chr4 66104805 66104888 -118183774 - MIR SINE MIR 0 262 180 294 241 0 36 chr4 66105934 66106017 -118182645 + CT-rich Low_complexity Low_complexity 3 82 0 326 289 163 0 chr4 66106544 66106679 -118181983 - MIR SINE MIR -36 226 70 228 347 80 19 chr4 66108073 66108286 -118180376 - MIR SINE MIR -8 254 29 867 132 0 16 chr4 66110426 66110608 -118178054 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 942 292 55 19 chr4 66110630 66110997 -118177665 - L2 LINE L2 -12 3301 2922 248 285 106 16 chr4 66111554 66111677 -118176985 + MIR SINE MIR 70 203 -59 2026 122 13 0 chr4 66112624 66112927 -118175735 - AluSx SINE Alu -5 307 1 256 198 0 62 chr4 66113260 66113356 -118175306 + T-rich Low_complexity Low_complexity 6 95 0 821 80 24 24 chr4 66113356 66113481 -118175181 - L1MA1 LINE L1 0 6302 6178 1043 274 18 6 chr4 66113573 66113902 -118174760 - L1M4 LINE L1 -2019 4127 3795 239 0 0 31 chr4 66114191 66114223 -118174439 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 2414 39 0 0 chr4 66114225 66114511 -118174151 - AluY SINE Alu -25 286 1 1814 268 52 26 chr4 66114546 66115196 -118173466 - L1ME3A LINE L1 -43 6127 5461 268 243 78 19 chr4 66115207 66115310 -118173352 - L1ME1 LINE L1 0 6166 6058 1983 129 7 0 chr4 66115573 66115867 -118172795 - AluSg SINE Alu -14 296 1 32 67 0 0 chr4 66117107 66117167 -118171495 + AT_rich Low_complexity Low_complexity 1 60 0 27 62 0 0 chr4 66118341 66118389 -118170273 + AT_rich Low_complexity Low_complexity 1 48 0 1852 253 52 66 chr4 66118598 66119191 -118169471 - MER77 LTR ERV1 -20 585 1 313 344 112 27 chr4 66119593 66119852 -118168810 - L1ME3A LINE L1 -1892 4254 3974 1644 229 41 5 chr4 66119888 66120302 -118168360 - L1 LINE L1 -1171 4975 4547 928 238 68 4 chr4 66120315 66120567 -118168095 + L1 LINE L1 4999 5266 -880 685 109 29 15 chr4 66120838 66120975 -118167687 + CT-rich Low_complexity Low_complexity 2 140 0 348 64 0 0 chr4 66120975 66121022 -118167640 + (CCTG)n Simple_repeat Simple_repeat 2 48 0 1161 251 122 19 chr4 66121308 66121774 -118166888 + L1MC4 LINE L1 6643 7156 -886 668 215 7 0 chr4 66121819 66121954 -118166708 - L1PA16 LINE L1 -1 6165 6030 492 250 107 45 chr4 66122152 66122488 -118166174 + L1MEc LINE L1 587 943 -5453 21 57 0 0 chr4 66122646 66122681 -118165981 + AT_rich Low_complexity Low_complexity 1 35 0 1268 263 121 45 chr4 66122815 66124451 -118164211 + L1MEc LINE L1 961 2681 -3534 28 48 0 0 chr4 66124698 66124740 -118163922 + AT_rich Low_complexity Low_complexity 1 42 0 42 20 0 0 chr4 66124897 66124946 -118163716 + AT_rich Low_complexity Low_complexity 1 49 0 590 275 12 12 chr4 66124987 66125154 -118163508 + LTR16C LTR ERVL 317 483 -8 23 33 0 0 chr4 66125861 66125891 -118162771 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr4 66126284 66126312 -118162350 + AT_rich Low_complexity Low_complexity 1 28 0 2942 149 10 14 chr4 66126314 66126831 -118161831 - L1PA14 LINE L1 -18 6143 5629 8075 173 16 16 chr4 66126931 66129173 -118159489 - L1PA14 LINE L1 -284 5877 3638 322 256 78 23 chr4 66129252 66129376 -118159286 - L1M4 LINE L1 -1712 4434 4303 225 0 0 0 chr4 66129376 66129401 -118159261 + (TTTTA)n Simple_repeat Simple_repeat 5 29 0 1351 200 14 22 chr4 66129420 66129695 -118158967 - AluJo SINE Alu -28 284 12 474 49 0 0 chr4 66130573 66130634 -118158028 + (CA)n Simple_repeat Simple_repeat 2 62 0 25 31 0 0 chr4 66131106 66131138 -118157524 + AT_rich Low_complexity Low_complexity 1 32 0 228 243 155 29 chr4 66131664 66131767 -118156895 - MIR SINE MIR -50 212 97 4281 170 65 67 chr4 66132293 66133659 -118155003 - L1MA3 LINE L1 0 6305 4958 1792 160 144 13 chr4 66133659 66134033 -118154629 + MSTA LTR MaLR 1 423 -5 6084 218 45 9 chr4 66134036 66135285 -118153377 - L1MA3 LINE L1 -1183 4963 3645 195 100 0 0 chr4 66135285 66135315 -118153347 + (TTG)n Simple_repeat Simple_repeat 3 32 0 6084 218 45 9 chr4 66135315 66135628 -118153034 - L1MA3 LINE L1 -2501 3645 3345 2994 221 36 10 chr4 66135642 66136541 -118152121 - L1PA14 LINE L1 -722 5444 4520 317 309 133 21 chr4 66136572 66136760 -118151902 - L1MEd LINE L1 -5297 822 614 838 146 7 21 chr4 66137547 66137691 -118150971 + AluJb SINE Alu 170 311 -1 869 227 116 38 chr4 66137982 66138276 -118150386 - MLT1B LTR MaLR -53 337 1 26 30 0 0 chr4 66138631 66138664 -118149998 + AT_rich Low_complexity Low_complexity 1 33 0 271 206 0 0 chr4 66139110 66139173 -118149489 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 300 206 29 0 chr4 66139277 66139345 -118149317 - L1MB7 LINE L1 -9 6175 6106 541 184 37 0 chr4 66139348 66139457 -118149205 + AluJ SINE Alu 19 131 -181 912 196 6 0 chr4 66139502 66139670 -118148992 + AluJ SINE Alu 129 297 -15 431 317 67 32 chr4 66139672 66139956 -118148706 - L1M4 LINE L1 -873 5273 4980 1131 123 6 0 chr4 66139956 66140119 -118148543 + AluSq SINE Alu 126 289 -24 22 0 0 0 chr4 66140124 66140146 -118148516 + AT_rich Low_complexity Low_complexity 1 22 0 35227 43 2 1 chr4 66140248 66145425 -118143237 - L1PA4 LINE L1 0 6155 971 253 249 33 123 chr4 66145527 66145724 -118142938 - L1M4 LINE L1 -1376 4770 4605 1600 84 0 9 chr4 66145724 66145974 -118142688 - AluSg/x SINE Alu 0 314 67 253 249 33 123 chr4 66145974 66146075 -118142587 - L1M4 LINE L1 -1541 4605 4497 441 0 0 0 chr4 66146317 66146366 -118142296 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 225 319 16 43 chr4 66146425 66146613 -118142049 - L1M4 LINE L1 -2029 4117 3935 310 283 96 50 chr4 66146625 66146844 -118141818 - L1M4 LINE L1 -2249 3897 3669 3204 296 50 38 chr4 66146910 66147830 -118140832 - L1PBa LINE L1 -5286 1577 629 2096 184 26 30 chr4 66147830 66148260 -118140402 + MSTA LTR MaLR 1 428 0 3204 296 50 38 chr4 66148260 66148889 -118139773 - L1PBa LINE L1 -6234 629 9 395 201 13 13 chr4 66149074 66149271 -118139391 + CT-rich Low_complexity Low_complexity 1 197 0 291 122 0 0 chr4 66151068 66151117 -118137545 + (TG)n Simple_repeat Simple_repeat 2 50 0 271 321 55 18 chr4 66151312 66151421 -118137241 - MER91C DNA MER1_type -14 126 14 24 0 0 0 chr4 66151712 66151736 -118136926 + AT_rich Low_complexity Low_complexity 1 24 0 1832 147 11 0 chr4 66152013 66152299 -118136363 + AluSx SINE Alu 3 291 -21 2317 95 0 0 chr4 66154627 66154933 -118133729 + AluY SINE Alu 1 306 -5 244 284 105 19 chr4 66155103 66155265 -118133397 - HAL1b LINE L1 -90 1258 1083 358 295 123 58 chr4 66155528 66156220 -118132442 - HAL1b LINE L1 -526 822 86 2664 137 27 17 chr4 66157174 66157772 -118130890 + MER4E LTR ERV1 1 766 0 243 79 0 0 chr4 66158224 66158262 -118130400 + (CA)n Simple_repeat Simple_repeat 2 39 0 23 33 0 0 chr4 66160316 66160346 -118128316 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr4 66160652 66160675 -118127987 + AT_rich Low_complexity Low_complexity 1 23 0 894 53 75 30 chr4 66160813 66160946 -118127716 - L1PA10 LINE L1 -1 6167 6029 2574 223 50 42 chr4 66160947 66162289 -118126373 + L1MB8 LINE L1 4778 6127 -51 1088 202 0 59 chr4 66162329 66162567 -118126095 - AluJb SINE Alu -88 224 1 801 228 81 37 chr4 66162939 66163266 -118125396 + MSTD LTR MaLR 1 379 -17 402 21 0 0 chr4 66164026 66164073 -118124589 + (TG)n Simple_repeat Simple_repeat 2 48 0 1492 182 56 3 chr4 66164136 66164422 -118124240 + AluSx SINE Alu 3 303 -9 439 293 25 32 chr4 66164503 66164660 -118124002 - FRAM SINE Alu -11 155 1 642 163 12 72 chr4 66164764 66164930 -118123732 - AluJo SINE Alu -142 170 15 246 161 0 89 chr4 66164930 66164986 -118123676 - Alu SINE Alu -5 296 246 22 35 0 0 chr4 66165069 66165098 -118123564 + AT_rich Low_complexity Low_complexity 1 29 0 1174 154 46 0 chr4 66166743 66166938 -118121724 + AluJb SINE Alu 86 289 -23 25 0 0 0 chr4 66167196 66167221 -118121441 + AT_rich Low_complexity Low_complexity 1 25 0 217 357 28 28 chr4 66169146 66169289 -118119373 - L2 LINE L2 -577 2737 2595 252 266 44 35 chr4 66169334 66169447 -118119215 + MIR SINE MIR 147 260 -2 1264 225 36 14 chr4 66170065 66170341 -118118321 + AluJo SINE Alu 4 285 -27 208 103 0 0 chr4 66170346 66170375 -118118287 + (GGA)n Simple_repeat Simple_repeat 2 30 0 739 139 23 17 chr4 66170375 66170547 -118118115 + GA-rich Low_complexity Low_complexity 3 175 0 490 69 56 0 chr4 66171503 66171575 -118117087 + MADE1 DNA Mariner 2 77 -3 369 0 0 0 chr4 66171577 66171618 -118117044 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 1402 123 0 9 chr4 66171764 66171992 -118116670 - L1PA13 LINE L1 -1 6162 5937 6272 159 99 69 chr4 66172223 66173801 -118114861 + pTR5 LTR ERV1 814 2438 0 296 255 43 28 chr4 66175116 66175257 -118113405 - L1MA9 LINE L1 -38 6274 6132 21 0 0 0 chr4 66175392 66175413 -118113249 + AT_rich Low_complexity Low_complexity 1 21 0 235 300 0 0 chr4 66176036 66176126 -118112536 + L1MC4 LINE L1 6614 6703 -1339 23 0 0 0 chr4 66176781 66176804 -118111858 + AT_rich Low_complexity Low_complexity 1 23 0 268 295 58 22 chr4 66177016 66177155 -118111507 - MER67A LTR ERV1 -5 538 395 272 270 107 10 chr4 66178197 66178393 -118110269 - MER97c DNA MER1_type? -56 1034 820 609 300 162 3 chr4 66178814 66179111 -118109551 - MER97c DNA MER1_type? -491 599 256 414 284 88 0 chr4 66179237 66179385 -118109277 - LTR41 LTR ERVL -610 163 3 261 300 60 0 chr4 66179390 66179490 -118109172 - Charlie2 DNA MER1_type -2548 314 209 216 0 0 0 chr4 66180270 66180294 -118108368 + (CAA)n Simple_repeat Simple_repeat 2 25 0 4215 109 62 19 chr4 66180416 66181115 -118107547 - L1PB1 LINE L1 0 6151 5423 1150 242 63 18 chr4 66181216 66181501 -118107161 + AluJo SINE Alu 3 300 -2 186 43 0 0 chr4 66181711 66181734 -118106928 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 24 32 0 0 chr4 66182053 66182084 -118106578 + AT_rich Low_complexity Low_complexity 1 31 0 1825 156 24 43 chr4 66182187 66182558 -118106104 - THE1B LTR MaLR 0 364 1 6214 230 35 14 chr4 66183714 66185373 -118103289 - L1 LINE L1 -1001 6564 4871 * 6331 102 25 1 chr4 66185361 66186293 -118102369 + L1P LINE L1 4130 5083 -1063 * 9499 191 55 26 chr4 66186291 66188741 -118099921 - L1 LINE L1 -2690 4875 2306 1266 248 4 4 chr4 66188741 66189019 -118099643 - AluJo SINE Alu -30 282 5 9499 191 55 26 chr4 66189019 66189704 -118098958 - L1 LINE L1 -5259 2306 1642 1145 272 16 0 chr4 66189708 66189958 -118098704 - L1 LINE L1 -6020 1545 1292 1766 177 3 0 chr4 66190119 66190418 -118098244 + AluSq SINE Alu 13 312 -1 2422 123 20 0 chr4 66191066 66191423 -118097239 + THE1B LTR MaLR 1 364 0 2715 55 0 0 chr4 66191548 66191894 -118096768 - L1PA5 LINE L1 -954 5192 4847 7097 54 0 2 chr4 66191894 66192866 -118095796 + L1PA5 LINE L1 5183 6152 -2 28 79 0 0 chr4 66192899 66192962 -118095700 + AT_rich Low_complexity Low_complexity 1 63 0 21 57 0 0 chr4 66193366 66193401 -118095261 + AT_rich Low_complexity Low_complexity 1 35 0 13249 251 35 18 chr4 66193841 66197886 -118090776 - L1P LINE L1 -1052 5094 979 359 395 16 0 chr4 66199121 66199364 -118089298 - L1PA12 LINE L1 -7328 253 7 830 155 125 209 chr4 66199667 66200164 -118088498 - LTR28 LTR ERV1 0 1020 566 34 0 0 0 chr4 66200185 66200219 -118088443 + AT_rich Low_complexity Low_complexity 1 34 0 382 307 131 52 chr4 66200418 66201106 -118087556 - HAL1b LINE L1 -522 826 85 904 219 57 125 chr4 66201355 66201756 -118086906 - MLT1A2 LTR MaLR 0 374 1 488 268 107 58 chr4 66202350 66202574 -118086088 - MER49 LTR ERV1 -35 888 654 573 299 10 62 chr4 66202682 66202878 -118085784 - LTR51 LTR ERV1 -263 408 239 241 313 25 0 chr4 66202948 66203028 -118085634 - LTR59 LTR ERV1 -405 192 111 320 328 72 17 chr4 66203315 66203495 -118085167 - LTR33A LTR ERVL -272 251 62 240 122 0 0 chr4 66203534 66203575 -118085087 + (CA)n Simple_repeat Simple_repeat 2 42 0 369 0 0 0 chr4 66203580 66203621 -118085041 + (GA)n Simple_repeat Simple_repeat 2 42 0 290 352 31 0 chr4 66204038 66204166 -118084496 - ERVL LTR ERVL -683 5081 4950 523 329 65 45 chr4 66204473 66204920 -118083742 - ERVL LTR ERVL -1150 4614 4159 11502 28 4 0 chr4 66204938 66206907 -118081755 - L1PA4 LINE L1 -169 5986 4013 1341 36 0 6 chr4 66206907 66207070 -118081592 + L1PA4 LINE L1 5989 6154 -1 186 176 0 0 chr4 66207073 66207124 -118081538 + A-rich Low_complexity Low_complexity 1 51 0 2334 87 3 0 chr4 66207661 66207971 -118080691 - AluY SINE Alu 0 311 1 291 283 25 57 chr4 66208251 66208410 -118080252 - ERVL LTR ERVL -2109 3376 3223 511 119 9 9 chr4 66208518 66208627 -118080035 + (TCTA)n Simple_repeat Simple_repeat 1 109 0 294 391 31 19 chr4 66208718 66209040 -118079622 - ERVL LTR ERVL -4062 1702 1377 207 333 96 40 chr4 66211290 66211488 -118077174 - MIR SINE MIR -34 228 20 1577 218 87 88 chr4 66212972 66213013 -118075649 - MLT2B3 LTR ERVL 0 554 514 7474 84 40 8 chr4 66213013 66214051 -118074611 - MER11C LTR ERVK 0 1071 1 1577 218 87 88 chr4 66214051 66214564 -118074098 - MLT2B3 LTR ERVL -40 514 1 11112 152 31 48 chr4 66214564 66216586 -118072076 - HERVL-B3-B3 LTR ERVL 0 5654 3669 1953 178 51 33 chr4 66216586 66217131 -118071531 - MLT2A2 LTR ERVL 0 554 1 22884 156 10 3 chr4 66217131 66220774 -118067888 - HERVL-B3-B3 LTR ERVL -1981 3673 6 1822 228 52 54 chr4 66220779 66221332 -118067330 - MLT2B3 LTR ERVL 0 554 3 25 0 0 0 chr4 66221836 66221861 -118066801 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr4 66222192 66222215 -118066447 + AT_rich Low_complexity Low_complexity 1 23 0 1464 202 183 16 chr4 66223048 66223479 -118065183 - MLT1D LTR MaLR -2 503 1 3933 188 53 3 chr4 66223821 66224535 -118064127 - MER21B LTR ERV1 -113 750 1 21 57 0 0 chr4 66225847 66225882 -118062780 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 66226039 66226060 -118062602 + AT_rich Low_complexity Low_complexity 1 21 0 314 275 22 11 chr4 66226961 66227052 -118061610 - L1MC4 LINE L1 -1337 6705 6614 * 349 300 0 0 chr4 66226978 66227068 -118061594 + L1MC4 LINE L1 6614 6703 -1339 14309 29 3 0 chr4 66227842 66229577 -118059085 + L1P LINE L1 3048 4788 -1358 2366 72 0 25 chr4 66230374 66230693 -118057969 - AluY SINE Alu 0 311 1 25 65 0 0 chr4 66230956 66231002 -118057660 + AT_rich Low_complexity Low_complexity 1 46 0 11522 198 19 10 chr4 66231748 66234143 -118054519 + Tigger1 DNA MER2_type 2 2418 0 3848 225 57 25 chr4 66234734 66236220 -118052442 - MER52A LTR ERV1 0 1755 1 1913 153 0 54 chr4 66236635 66237008 -118051654 - MER4A LTR ERV1 -311 353 1 5147 135 28 40 chr4 66239443 66239642 -118049020 + L1PA11 LINE L1 5205 5405 -769 1736 143 0 4 chr4 66239642 66239900 -118048762 + AluSx SINE Alu 37 293 -19 5147 135 28 40 chr4 66239900 66240650 -118048012 + L1PA11 LINE L1 5405 6141 -33 4625 197 36 3 chr4 66240716 66241722 -118046940 - L1P LINE L1 -2869 3277 2239 7787 160 20 44 chr4 66241723 66242149 -118046513 + L1P4 LINE L1 3818 4253 -1921 2244 46 7 7 chr4 66242149 66242421 -118046241 + L1PA5 LINE L1 5864 6148 -6 7787 160 20 44 chr4 66242421 66242493 -118046169 + L1P4 LINE L1 4253 4325 -1849 182 61 0 30 chr4 66242493 66242526 -118046136 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 7787 160 20 44 chr4 66242526 66243758 -118044904 + L1P4 LINE L1 4325 5494 -680 208 70 47 0 chr4 66243758 66243801 -118044861 + A-rich Low_complexity Low_complexity 3 47 0 7787 160 20 44 chr4 66243801 66243954 -118044708 + L1P4 LINE L1 5494 5649 -525 7685 219 46 46 chr4 66243952 66245225 -118043437 + L1MB1 LINE L1 2726 3997 -2171 * 2118 119 13 13 chr4 66245225 66245537 -118043125 + AluSx SINE Alu 1 312 0 7685 219 46 46 chr4 66245537 66247139 -118041523 + L1MB1 LINE L1 3997 5615 -553 1358 128 5 9 chr4 66247139 66247350 -118041312 + AluSg/x SINE Alu 97 306 -6 1562 169 32 0 chr4 66247366 66247650 -118041012 + L1MB1 LINE L1 5826 6118 -50 5355 118 35 2 chr4 66247658 66248865 -118039797 - L1PA13 LINE L1 -14 6800 5583 13739 224 52 24 chr4 66248865 66253507 -118035155 - L1PA13 LINE L1 -1578 5219 339 5710 217 18 52 chr4 66253505 66254173 -118034489 - L1PA12 LINE L1 -5577 2004 1315 * 801 92 0 0 chr4 66254173 66254282 -118034380 + L1PA10 LINE L1 6049 6157 -11 5710 217 18 52 chr4 66254282 66255836 -118032826 - L1PA12 LINE L1 -6266 1315 155 1176 61 6 11 chr4 66255836 66255848 -118032814 + (TTTC)n Simple_repeat Simple_repeat 1 191 0 1176 61 6 11 chr4 66255848 66256029 -118032633 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 21 0 0 0 chr4 66256067 66256088 -118032574 + AT_rich Low_complexity Low_complexity 1 21 0 3521 108 19 2 chr4 66256111 66256632 -118032030 - L1PA10 LINE L1 -11 6157 5628 7280 175 16 9 chr4 66256632 66258037 -118030625 + L1P LINE L1 2131 3544 -2602 1052 161 6 0 chr4 66258034 66258202 -118030460 - L1PA12 LINE L1 -7412 169 1 * 3955 182 11 15 chr4 66258257 66258994 -118029668 - Tigger1 DNA MER2_type -1 2417 1682 3191 173 8 40 chr4 66258994 66259617 -118029045 - LTR26 LTR ERV1 0 603 1 3955 182 11 15 chr4 66259617 66259661 -118029001 - Tigger1 DNA MER2_type -736 1682 1639 1218 237 6 32 chr4 66259664 66260006 -118028656 + L1MB8 LINE L1 5834 6166 -12 1655 98 0 21 chr4 66260191 66260425 -118028237 + AluY SINE Alu 1 229 -82 191 361 59 25 chr4 66261895 66262014 -118026648 - L3 LINE CR1 -1240 337 215 24 32 0 0 chr4 66262499 66262530 -118026132 + AT_rich Low_complexity Low_complexity 1 31 0 308 274 47 0 chr4 66263726 66263832 -118024830 + MIR SINE MIR 146 256 -6 220 184 0 0 chr4 66266710 66266748 -118021914 + (CA)n Simple_repeat Simple_repeat 1 38 0 25 0 0 0 chr4 66268096 66268121 -118020541 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr4 66268587 66268616 -118020046 + AT_rich Low_complexity Low_complexity 1 29 0 31 58 0 0 chr4 66268705 66268757 -118019905 + AT_rich Low_complexity Low_complexity 1 52 0 4412 147 39 17 chr4 66268758 66269562 -118019100 - L1PA13 LINE L1 0 6163 5343 1823 157 6 10 chr4 66270455 66270767 -118017895 + AluSx SINE Alu 1 311 -1 203 388 49 33 chr4 66270783 66270966 -118017696 + L2 LINE L2 2906 3091 -181 23 0 0 0 chr4 66271619 66271642 -118017020 + AT_rich Low_complexity Low_complexity 1 23 0 2498 249 59 28 chr4 66271727 66272718 -118015944 - L1MB8 LINE L1 -19 6159 5137 363 306 24 47 chr4 66272871 66273041 -118015621 + L1ME3A LINE L1 2109 2274 -4122 372 304 71 6 chr4 66273230 66273398 -118015264 + L1ME3A LINE L1 2802 2980 -3235 497 311 120 52 chr4 66273399 66273644 -118015018 + L1ME3A LINE L1 5675 5902 -337 1886 124 0 4 chr4 66273644 66273909 -118014753 + AluSg SINE Alu 35 298 -12 497 311 120 52 chr4 66273909 66274180 -118014482 + L1ME3A LINE L1 5902 6226 -13 479 322 106 48 chr4 66274235 66274701 -118013961 - L2 LINE L2 -212 3101 2616 824 154 25 0 chr4 66274828 66274990 -118013672 + L1MA2 LINE L1 6139 6304 0 1319 142 12 102 chr4 66275235 66275559 -118013103 - AluSq SINE Alu -18 295 1 2005 133 44 9 chr4 66276456 66276795 -118011867 - L1PB2 LINE L1 0 6151 5801 254 95 24 0 chr4 66276796 66276838 -118011824 + (TA)n Simple_repeat Simple_repeat 2 44 0 306 197 42 14 chr4 66276876 66276947 -118011715 + L1MCa LINE L1 1992 2064 -4362 297 0 0 0 chr4 66276950 66276983 -118011679 + (CA)n Simple_repeat Simple_repeat 2 34 0 2132 202 6 4 chr4 66276991 66277999 -118010663 - L1PB2 LINE L1 -360 5791 4693 185 0 40 0 chr4 66278094 66278119 -118010543 + (TAA)n Simple_repeat Simple_repeat 2 27 0 902 224 25 16 chr4 66278119 66278364 -118010298 + L1 LINE L1 4410 4656 -1490 332 112 11 34 chr4 66278919 66279008 -118009654 + (TA)n Simple_repeat Simple_repeat 1 87 0 303 252 101 22 chr4 66279235 66279374 -118009288 + L1M LINE L1 5277 5426 -744 602 317 18 27 chr4 66279417 66279638 -118009024 + MIR SINE MIR 2 220 -42 22 0 0 0 chr4 66279668 66279690 -118008972 + AT_rich Low_complexity Low_complexity 1 22 0 1956 148 7 3 chr4 66279728 66280026 -118008636 + AluSc SINE Alu 1 299 -10 687 234 25 3 chr4 66280217 66280413 -118008249 - L1MB5 LINE L1 -10 6170 5973 2477 229 48 24 chr4 66280608 66281237 -118007425 + MER73 LTR ERVL 1 644 0 3267 184 87 3 chr4 66281269 66281948 -118006714 + L1PBa LINE L1 174 909 -5954 1417 71 10 0 chr4 66281946 66282143 -118006519 + L1PBa LINE L1 1572 1770 -5093 * 2029 168 11 18 chr4 66282142 66282524 -118006138 + MSTA-int LTR MaLR 1202 1580 0 1294 199 173 24 chr4 66282524 66282895 -118005767 + MSTA LTR MaLR 1 426 -2 3090 262 39 19 chr4 66282928 66284067 -118004595 + L1M4 LINE L1 4023 5183 -963 692 184 16 0 chr4 66284067 66284192 -118004470 - AluJb SINE Alu -68 244 118 315 0 0 0 chr4 66284192 66284227 -118004435 + (TTTTTG)n Simple_repeat Simple_repeat 1 35 0 820 151 24 0 chr4 66284227 66284353 -118004309 - AluJb SINE Alu -179 133 5 23 78 0 0 chr4 66284370 66284421 -118004241 + AT_rich Low_complexity Low_complexity 1 51 0 768 242 61 64 chr4 66284763 66284894 -118003768 + MSTD LTR MaLR 1 131 -265 2002 120 23 10 chr4 66284894 66285194 -118003468 + AluSq SINE Alu 1 304 -9 768 242 61 64 chr4 66285194 66285423 -118003239 + MSTD LTR MaLR 131 384 -12 282 29 0 0 chr4 66285907 66285942 -118002720 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 2174 171 79 0 chr4 66285966 66286359 -118002303 - MER57B LTR ERV1 -10 424 1 1414 102 128 4 chr4 66286360 66286586 -118002076 - MER57B-int LTR ERV1 -2 7535 7282 615 155 23 47 chr4 66286587 66286716 -118001946 - LTR54B LTR ERV1 -367 131 6 1153 122 33 0 chr4 66286718 66286898 -118001764 - MER57B-int LTR ERV1 -388 7149 6964 310 203 0 0 chr4 66286895 66286954 -118001708 - MER57B-int LTR ERV1 -4021 1925 1867 * 2244 159 40 26 chr4 66286933 66287431 -118001231 - MER57B-int LTR ERV1 -2921 3584 648 350 191 45 34 chr4 66287431 66287520 -118001142 + LTR9 LTR ERV1 1 90 -522 1809 133 0 11 chr4 66287523 66287801 -118000861 + AluSg SINE Alu 1 275 -35 191 88 29 0 chr4 66287806 66287840 -118000822 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3121 73 154 151 chr4 66288044 66288700 -117999962 + LTR12 LTR ERV1 57 714 0 1330 141 0 0 chr4 66288700 66288890 -117999772 - MER57B-int LTR ERV1 -5469 477 288 3463 166 82 3 chr4 66288884 66289510 -117999152 - MER57B-int LTR ERV1 -6862 675 1 2672 131 19 2 chr4 66289510 66289937 -117998725 - MER57B LTR ERV1 0 434 1 249 270 54 0 chr4 66290663 66290737 -117997925 + MIR SINE MIR 71 148 -114 406 253 152 92 chr4 66292942 66293409 -117995253 + L1ME4a LINE L1 5571 6065 -56 186 133 0 0 chr4 66294836 66294866 -117993796 + (CA)n Simple_repeat Simple_repeat 2 31 0 2122 214 61 21 chr4 66294965 66295535 -117993127 + L1MB2 LINE L1 5569 6161 -10 1409 217 10 22 chr4 66296582 66296896 -117991766 + AluJo SINE Alu 1 310 -2 324 248 10 10 chr4 66298790 66298891 -117989771 - L1MA9 LINE L1 -44 6268 6168 49 32 0 0 chr4 66299295 66299358 -117989304 + AT_rich Low_complexity Low_complexity 1 63 0 698 215 177 48 chr4 66300002 66300360 -117988302 - L1ME2 LINE L1 -19 6145 5728 273 239 45 30 chr4 66300403 66300537 -117988125 - L1ME2 LINE L1 -993 5153 5018 904 193 16 27 chr4 66300545 66300732 -117987930 - AluJb SINE Alu -16 296 112 5814 66 9 1 chr4 66300736 66301489 -117987173 - L1PA7 LINE L1 0 6154 5396 25 0 0 0 chr4 66302640 66302665 -117985997 + AT_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chr4 66304395 66304437 -117984225 + AT_rich Low_complexity Low_complexity 1 42 0 367 375 52 39 chr4 66304706 66305167 -117983495 + L1 LINE L1 3 469 -5812 392 223 138 40 chr4 66305585 66305832 -117982830 + L1 LINE L1 1126 1396 -4885 * 1722 227 86 38 chr4 66305803 66306491 -117982171 + L1 LINE L1 3377 4097 -2253 21 0 0 0 chr4 66306903 66306924 -117981738 + AT_rich Low_complexity Low_complexity 1 21 0 595 272 43 34 chr4 66306933 66307168 -117981494 - MIR SINE MIR -24 238 2 22 70 0 0 chr4 66307233 66307276 -117981386 + AT_rich Low_complexity Low_complexity 1 43 0 429 237 85 40 chr4 66307287 66307494 -117981168 - MLT1F LTR MaLR -4 538 277 201 226 0 0 chr4 66307617 66307670 -117980992 + GA-rich Low_complexity Low_complexity 2 54 0 181 54 0 54 chr4 66307687 66307724 -117980938 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 358 344 96 6 chr4 66307729 66307886 -117980776 - MLT1F LTR MaLR -417 173 3 23 54 0 0 chr4 66308026 66308063 -117980599 + AT_rich Low_complexity Low_complexity 1 37 0 1787 138 0 0 chr4 66308225 66308486 -117980176 + AluSq SINE Alu 1 261 -52 207 0 0 0 chr4 66308496 66308519 -117980143 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1429 222 21 0 chr4 66308926 66309210 -117979452 - AluJo SINE Alu -12 300 11 469 271 90 0 chr4 66310342 66310475 -117978187 + LTR41 LTR ERVL 5 149 -624 370 282 88 15 chr4 66310625 66310929 -117977733 + MER97c DNA MER1_type? 254 605 -289 451 281 56 26 chr4 66311364 66311595 -117977067 + MER97c DNA MER1_type? 814 1051 -39 322 285 56 21 chr4 66312623 66312767 -117975895 + MER67A LTR ERV1 395 543 0 440 137 0 0 chr4 66312816 66312889 -117975773 + L1PA11 LINE L1 6101 6173 -1 21 0 0 0 chr4 66313049 66313070 -117975592 + AT_rich Low_complexity Low_complexity 1 21 0 2326 62 20 0 chr4 66314091 66314396 -117974266 - AluY SINE Alu 0 311 1 27 0 0 0 chr4 66314920 66314947 -117973715 + AT_rich Low_complexity Low_complexity 1 27 0 341 248 0 17 chr4 66315348 66315465 -117973197 + L1MA9 LINE L1 6160 6274 -38 1353 129 30 0 chr4 66317021 66317253 -117971409 + L1PA13 LINE L1 5923 6161 -2 1992 116 0 11 chr4 66317326 66317611 -117971051 + AluSg1 SINE Alu 3 284 -25 182 279 15 15 chr4 66317631 66317699 -117970963 - MIR3 SINE MIR -40 168 101 27 49 0 0 chr4 66318797 66318838 -117969824 + AT_rich Low_complexity Low_complexity 1 41 0 1578 274 73 38 chr4 66318980 66319848 -117968814 - L1M4c LINE L1 -4613 2346 1409 1962 130 17 0 chr4 66319848 66320141 -117968521 - AluSx SINE Alu -14 298 1 1578 274 73 38 chr4 66320141 66320690 -117967972 - L1M4c LINE L1 -5550 1409 881 2533 146 57 2 chr4 66320702 66321142 -117967520 + MER75 DNA T2_type 51 514 0 629 202 0 0 chr4 66321145 66321254 -117967408 - FLAM_A SINE Alu -26 116 8 257 326 65 0 chr4 66321274 66321366 -117967296 - L1M4c LINE L1 -6752 107 10 2206 225 77 20 chr4 66321406 66322014 -117966648 - MER73 LTR ERVL -1 643 1 556 277 38 47 chr4 66322185 66322398 -117966264 + L1MB5 LINE L1 5974 6184 0 592 276 32 36 chr4 66322640 66322861 -117965801 - MIR SINE MIR -41 221 2 30 45 0 0 chr4 66322922 66322966 -117965696 + AT_rich Low_complexity Low_complexity 1 44 0 315 273 29 45 chr4 66322976 66323158 -117965504 - MLT1G LTR MaLR 0 590 382 9212 34 3 0 chr4 66323545 66325438 -117963224 + L1PA3 LINE L1 4260 6155 0 195 186 0 0 chr4 66325444 66325487 -117963175 + GA-rich Low_complexity Low_complexity 2 44 0 21 36 0 0 chr4 66326023 66326051 -117962611 + AT_rich Low_complexity Low_complexity 1 28 0 233 230 118 15 chr4 66326489 66326624 -117962038 - L1M4 LINE L1 -754 5392 5244 261 233 14 14 chr4 66326797 66326870 -117961792 + (TA)n Simple_repeat Simple_repeat 1 73 0 996 222 6 48 chr4 66327422 66327737 -117960925 - L1M4 LINE L1 -1490 4656 4355 2469 207 18 36 chr4 66327745 66328889 -117959773 + L1PB1 LINE L1 4670 5788 -363 3607 114 70 31 chr4 66328908 66329983 -117958679 + MER11A LTR ERVK 1 1232 -4 414 57 0 0 chr4 66329987 66330040 -117958622 + (CA)n Simple_repeat Simple_repeat 2 54 0 2034 176 3 0 chr4 66330059 66330423 -117958239 + L1PB1 LINE L1 5782 6146 -5 939 99 59 7 chr4 66331768 66331920 -117956742 - L1MA2 LINE L1 0 6304 6145 448 356 71 26 chr4 66332058 66332486 -117956176 + L2 LINE L2 2624 3063 -250 609 307 117 43 chr4 66332605 66333093 -117955569 - L1ME3A LINE L1 -23 6216 5693 271 280 44 16 chr4 66333112 66333294 -117955368 - L1ME3A LINE L1 -3234 2981 2795 213 211 39 0 chr4 66333353 66333405 -117955257 + (TA)n Simple_repeat Simple_repeat 2 55 0 378 289 70 40 chr4 66333451 66333652 -117955010 - L1ME3A LINE L1 -4080 2316 2110 2358 247 65 22 chr4 66333789 66334790 -117953872 + L1MB8 LINE L1 5118 6161 -17 25 31 0 0 chr4 66334864 66334896 -117953766 + AT_rich Low_complexity Low_complexity 1 32 0 34 55 0 0 chr4 66334933 66334988 -117953674 + AT_rich Low_complexity Low_complexity 1 55 0 4890 151 4 5 chr4 66336610 66337431 -117951231 + L1PA13 LINE L1 5343 6162 -1 37 39 0 0 chr4 66337432 66337483 -117951179 + AT_rich Low_complexity Low_complexity 1 51 0 243 0 0 0 chr4 66337854 66337881 -117950781 + (T)n Simple_repeat Simple_repeat 1 27 0 227 244 0 0 chr4 66339480 66339525 -117949137 + (TG)n Simple_repeat Simple_repeat 2 46 0 22 0 0 0 chr4 66340298 66340320 -117948342 + AT_rich Low_complexity Low_complexity 1 22 0 27 62 0 0 chr4 66340670 66340718 -117947944 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr4 66341118 66341139 -117947523 + AT_rich Low_complexity Low_complexity 1 21 0 328 246 45 9 chr4 66342342 66342452 -117946210 - MIR SINE MIR -3 259 146 197 430 27 11 chr4 66342472 66342658 -117946004 + L2 LINE L2 2569 2757 -557 228 342 81 0 chr4 66342984 66343095 -117945567 + L2 LINE L2 3192 3311 -2 234 154 39 0 chr4 66343639 66343691 -117944971 + (TA)n Simple_repeat Simple_repeat 2 55 0 21 71 0 0 chr4 66344047 66344089 -117944573 + AT_rich Low_complexity Low_complexity 1 42 0 2133 235 48 29 chr4 66345923 66346588 -117942074 - L1MB8 LINE L1 -9 6169 5492 24 0 0 0 chr4 66346608 66346632 -117942030 + AT_rich Low_complexity Low_complexity 1 24 0 559 299 58 43 chr4 66348271 66348548 -117940114 + LTR16A LTR ERVL 25 305 -145 961 278 72 17 chr4 66348548 66348894 -117939768 - MLT1A1 LTR MaLR 0 365 1 244 336 70 0 chr4 66348894 66349032 -117939630 + LTR16A LTR ERVL 300 447 -3 498 316 36 21 chr4 66349043 66349236 -117939426 + HERV16 LTR ERVL 5 200 -4796 1101 233 0 0 chr4 66349417 66349632 -117939030 - MER41D LTR ERV1 0 557 343 705 384 12 18 chr4 66349684 66350025 -117938637 - L1PA13 LINE L1 -6448 339 1 511 205 16 8 chr4 66350170 66350306 -117938356 - L1MB8 LINE L1 -872 5274 5138 2187 171 3 0 chr4 66350344 66350707 -117937955 - THE1B LTR MaLR 0 364 1 1749 135 4 0 chr4 66350707 66350973 -117937689 - THE1B-int LTR MaLR 0 1580 1314 1199 107 0 0 chr4 66350976 66351144 -117937518 + MER11A LTR ERVK 1099 1266 0 201 147 0 0 chr4 66351144 66351178 -117937484 + (CA)n Simple_repeat Simple_repeat 1 34 0 2004 173 6 3 chr4 66351184 66351548 -117937114 + L1PB1 LINE L1 5782 6146 -5 369 60 0 143 chr4 66352893 66352977 -117935685 - L1MA1 LINE L1 0 6302 6231 677 298 113 48 chr4 66353137 66353641 -117935021 - L1ME3A LINE L1 -12 6158 5622 369 313 44 16 chr4 66353658 66353840 -117934822 - L1ME3A LINE L1 -3234 2912 2726 703 259 62 24 chr4 66353948 66354238 -117934424 + L1MB8 LINE L1 5861 6161 -17 25 31 0 0 chr4 66354315 66354347 -117934315 + AT_rich Low_complexity Low_complexity 1 32 0 34 72 0 0 chr4 66354384 66354453 -117934209 + AT_rich Low_complexity Low_complexity 1 69 0 4908 147 4 6 chr4 66356062 66356878 -117931784 + L1PA13 LINE L1 5343 6156 -7 43 35 0 0 chr4 66356879 66356936 -117931726 + AT_rich Low_complexity Low_complexity 1 57 0 227 244 0 0 chr4 66358913 66358958 -117929704 + (TG)n Simple_repeat Simple_repeat 2 46 0 22 0 0 0 chr4 66359730 66359752 -117928910 + AT_rich Low_complexity Low_complexity 1 22 0 30 89 0 0 chr4 66360101 66360180 -117928482 + AT_rich Low_complexity Low_complexity 1 79 0 268 264 47 19 chr4 66361768 66361874 -117926788 - MIR SINE MIR -3 259 151 223 419 27 11 chr4 66361899 66362085 -117926577 + L2 LINE L2 2569 2757 -557 228 342 81 0 chr4 66362411 66362522 -117926140 + L2 LINE L2 3192 3311 -2 234 154 39 0 chr4 66363066 66363118 -117925544 + (TA)n Simple_repeat Simple_repeat 2 55 0 6281 33 0 0 chr4 66413672 66414425 -117874237 - L1P LINE L1 -1604 4542 3790 2186 158 90 59 chr4 66415232 66415743 -117872919 - LTR1 LTR ERV1 -190 595 69 6685 72 2 0 chr4 66415850 66417373 -117871289 + L1PA6 LINE L1 4615 6138 -16 432 126 35 0 chr4 66417402 66417489 -117871173 + (TA)n Simple_repeat Simple_repeat 1 90 0 381 214 0 22 chr4 66417500 66417589 -117871073 + L1MA6 LINE L1 4759 4845 -1301 1870 241 24 21 chr4 66417592 66418015 -117870647 + MSTB1 LTR MaLR 1 424 -8 2266 220 24 3 chr4 66418024 66418952 -117869710 + L1MA6 LINE L1 4845 5793 -498 336 246 37 0 chr4 66418975 66419000 -117869662 + (TA)n Simple_repeat Simple_repeat 1 24 -115 189 0 0 0 chr4 66419000 66419021 -117869641 + (TC)n Simple_repeat Simple_repeat 2 22 0 336 246 37 0 chr4 66419021 66419129 -117869533 + (TA)n Simple_repeat Simple_repeat 24 139 0 321 26 0 0 chr4 66419185 66419223 -117869439 + (TA)n Simple_repeat Simple_repeat 2 39 0 1928 203 55 17 chr4 66419238 66419737 -117868925 + L1MA6 LINE L1 5782 6300 0 258 56 0 0 chr4 66419879 66419915 -117868747 + (TG)n Simple_repeat Simple_repeat 2 37 0 30 0 0 0 chr4 66420074 66420104 -117868558 + AT_rich Low_complexity Low_complexity 1 30 0 3552 251 39 6 chr4 66420267 66421118 -117867544 - MER54A LTR ERVL 0 901 23 766 129 14 0 chr4 66422298 66422438 -117866224 + GA-rich Low_complexity Low_complexity 2 143 0 9960 185 68 40 chr4 66423424 66425120 -117863542 - Tigger1 DNA MER2_type 0 2418 772 849 198 6 41 chr4 66425120 66425292 -117863370 - FRAM SINE Alu 0 166 1 9960 185 68 40 chr4 66425292 66425471 -117863191 - Tigger1 DNA MER2_type -1646 772 600 1991 206 9 23 chr4 66425471 66425909 -117862753 - MSTB1 LTR MaLR 0 432 1 9960 185 68 40 chr4 66425909 66426382 -117862280 - Tigger1 DNA MER2_type -1818 600 1 21 36 0 0 chr4 66426491 66426519 -117862143 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr4 66427669 66427713 -117860949 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr4 66429159 66429181 -117859481 + AT_rich Low_complexity Low_complexity 1 22 0 2117 171 11 102 chr4 66429675 66430214 -117858448 + MER4B LTR ERV1 85 574 -36 3034 196 40 23 chr4 66430245 66430847 -117857815 + MER4B-int LTR ERV1 1 612 -6146 242 240 0 141 chr4 66430847 66430968 -117857694 + MER61E LTR ERV1 1 104 -465 789 312 81 19 chr4 66431052 66431402 -117857260 + MER61E LTR ERV1 86 635 -144 1397 47 0 0 chr4 66431452 66431624 -117857038 + LTR10C LTR ERV1 1 172 -419 1317 127 0 79 chr4 66431724 66431953 -117856709 + LTR10C LTR ERV1 379 589 -2 1036 209 34 17 chr4 66431958 66432192 -117856470 + MER4B-int LTR ERV1 608 845 -5913 1191 202 129 3 chr4 66432198 66432485 -117856177 + MSTA LTR MaLR 95 417 -11 754 133 0 0 chr4 66432552 66432672 -117855990 + MSTA-int LTR MaLR 14 133 -1518 2286 172 9 9 chr4 66432676 66433100 -117855562 + MSTA-int LTR MaLR 1228 1651 0 1656 202 102 20 chr4 66433100 66433147 -117855515 + MSTA LTR MaLR 1 43 -385 2187 111 80 9 chr4 66433147 66433497 -117855165 + THE1C LTR MaLR 1 375 0 1656 202 102 20 chr4 66433497 66433840 -117854822 + MSTA LTR MaLR 43 423 -5 2269 160 38 66 chr4 66433841 66434897 -117853765 + MER4B-int LTR ERV1 855 1974 -4784 25912 94 2 4 chr4 66434997 66438616 -117850046 - L1P LINE L1 -2533 3613 2 417 184 0 0 chr4 66438617 66438693 -117849969 - L1MA9 LINE L1 -406 5906 5831 377 278 40 0 chr4 66438699 66438850 -117849812 - MER31-int LTR ERV1 -1159 3777 3621 183 129 0 0 chr4 66439011 66439042 -117849620 + (TA)n Simple_repeat Simple_repeat 2 32 0 212 183 0 17 chr4 66439309 66439369 -117849293 + GA-rich Low_complexity Low_complexity 2 60 0 193 333 25 12 chr4 66439384 66439465 -117849197 + L2 LINE L2 3187 3268 -4 24 0 0 0 chr4 66439638 66439662 -117849000 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr4 66440752 66440790 -117847872 + AT_rich Low_complexity Low_complexity 1 38 0 189 0 0 0 chr4 66441466 66441487 -117847175 + (CA)n Simple_repeat Simple_repeat 2 22 0 1007 221 112 27 chr4 66442024 66442318 -117846344 + MLT1B LTR MaLR 3 321 -69 1331 64 6 0 chr4 66442328 66442501 -117846161 + L1PA8A LINE L1 5384 5557 -574 22 0 0 0 chr4 66442596 66442618 -117846044 + AT_rich Low_complexity Low_complexity 1 22 0 2967 207 52 68 chr4 66442725 66443273 -117845389 - L1MB2 LINE L1 -5 6402 5877 180 0 0 0 chr4 66443273 66443293 -117845369 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2967 207 52 68 chr4 66443293 66443713 -117844949 - L1MB2 LINE L1 -530 5877 5452 605 227 191 20 chr4 66443721 66443748 -117844914 - L1MB2 LINE L1 -2816 3566 3545 1523 194 23 23 chr4 66443748 66444058 -117844604 - AluSq SINE Alu -3 310 1 605 227 191 20 chr4 66444058 66444334 -117844328 - L1MB2 LINE L1 -2837 3545 3211 249 157 0 96 chr4 66444340 66444383 -117844279 - L1MB2 LINE L1 -4137 2247 2214 1286 149 40 5 chr4 66444383 66444605 -117844057 - MER30 DNA MER1_type 0 230 1 249 157 0 96 chr4 66444605 66444644 -117844018 - L1MB2 LINE L1 -4170 2214 2173 197 56 37 56 chr4 66444666 66444720 -117843942 + (TAAAA)n Simple_repeat Simple_repeat 5 57 0 68 13 0 0 chr4 66444720 66444795 -117843867 + AT_rich Low_complexity Low_complexity 1 75 0 340 263 80 52 chr4 66444795 66445008 -117843654 - L1MB2 LINE L1 -4214 2170 1952 1711 273 40 66 chr4 66445024 66446231 -117842431 - L1MB2 LINE L1 -4534 1779 801 207 0 0 0 chr4 66446266 66446289 -117842373 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1332 248 72 84 chr4 66446480 66447642 -117841020 - L1M1 LINE L1 -4447 3118 2208 617 385 39 21 chr4 66448053 66448521 -117840141 - L1M1 LINE L1 -5804 1692 1217 22 35 0 0 chr4 66449106 66449135 -117839527 + AT_rich Low_complexity Low_complexity 1 29 0 22 80 0 0 chr4 66449403 66449453 -117839209 + AT_rich Low_complexity Low_complexity 1 50 0 23 33 0 0 chr4 66450461 66450491 -117838171 + AT_rich Low_complexity Low_complexity 1 30 0 8275 156 49 54 chr4 66450652 66452385 -117836277 + MER4B-int LTR ERV1 5034 6758 0 1013 187 14 9 chr4 66452385 66452599 -117836063 + MER4B LTR ERV1 1 215 -395 1579 179 9 37 chr4 66452617 66452941 -117835721 + MER4E LTR ERV1 462 776 -3 2575 194 33 12 chr4 66452943 66453452 -117835210 + MER4E-int LTR ERV1 1 520 -6238 367 197 91 45 chr4 66453905 66454037 -117834625 + MER97c DNA MER1_type? 814 951 -139 325 319 42 32 chr4 66455085 66455301 -117833361 + MER67A LTR ERV1 326 543 0 471 123 0 0 chr4 66455352 66455425 -117833237 + L1PA11 LINE L1 6101 6173 -1 23 0 0 0 chr4 66455425 66455448 -117833214 + AT_rich Low_complexity Low_complexity 1 23 0 205 314 138 31 chr4 66456485 66456644 -117832018 + MIR SINE MIR 12 187 -75 394 250 0 30 chr4 66457527 66457659 -117831003 + L1MA9 LINE L1 6155 6282 -30 259 393 14 21 chr4 66458425 66458570 -117830092 - L2 LINE L2 -189 3083 2940 707 193 0 15 chr4 66459315 66459471 -117829191 - FLAM_C SINE Alu 0 154 1 1800 112 0 4 chr4 66460294 66460545 -117828117 - AluSq SINE Alu -20 293 44 4055 21 0 0 chr4 66462242 66462708 -117825954 + L1P LINE L1 3956 4421 -1725 * 4714 160 19 0 chr4 66462707 66463551 -117825111 + L1MA1 LINE L1 5254 6113 -189 429 20 0 0 chr4 66463551 66463601 -117825061 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 5005 114 51 3 chr4 66463608 66464354 -117824308 + L1P3 LINE L1 818 1599 -4862 1304 82 0 0 chr4 66464355 66464537 -117824125 - L1P LINE L1 -2696 3450 3269 4519 211 12 6 chr4 66464537 66465387 -117823275 - ERVL-B3 LTR ERVL -1027 4737 3883 4048 253 54 17 chr4 66465383 66466493 -117822169 - ERVL-B3 LTR ERVL -4612 1152 2 * 1912 246 34 56 chr4 66466494 66467050 -117821612 - MLT2B3 LTR ERVL 0 554 11 1985 157 0 0 chr4 66467502 66467802 -117820860 - AluSg SINE Alu -7 303 4 257 243 40 22 chr4 66468763 66468872 -117819790 - MLT1E3 LTR MaLR -2 622 439 24 77 0 0 chr4 66470337 66470389 -117818273 + AT_rich Low_complexity Low_complexity 1 52 0 1922 298 50 40 chr4 66470395 66471194 -117817468 - L1M4b LINE L1 -6041 818 12 4391 149 31 20 chr4 66471282 66472066 -117816596 - L1PA13 LINE L1 0 6163 5372 1264 214 22 0 chr4 66472067 66472363 -117816299 + L1P LINE L1 5051 5352 -799 587 210 74 46 chr4 66472490 66472699 -117815963 + L1MB5 LINE L1 5956 6174 0 24 0 0 0 chr4 66472899 66472923 -117815739 + AT_rich Low_complexity Low_complexity 1 24 0 538 284 71 34 chr4 66472927 66473166 -117815496 - MIR SINE MIR -13 249 2 191 333 31 52 chr4 66473762 66473858 -117814804 - MIR SINE MIR -110 152 59 208 303 131 0 chr4 66475206 66475305 -117813357 - MIR SINE MIR -60 148 37 2491 54 0 3 chr4 66475654 66475951 -117812711 - AluY SINE Alu -15 296 1 851 234 77 25 chr4 66476238 66476473 -117812189 - MIR SINE MIR 0 262 16 2098 115 0 20 chr4 66477067 66477371 -117811291 + AluSx SINE Alu 3 300 -12 2054 128 3 3 chr4 66478076 66478372 -117810290 - AluSx SINE Alu -14 298 3 255 296 11 34 chr4 66478495 66478583 -117810079 + L2 LINE L2 3226 3311 -2 400 195 0 0 chr4 66479432 66479509 -117809153 + MER116 DNA Mariner 4 80 0 422 292 177 0 chr4 66479592 66479722 -117808940 + MER5A DNA MER1_type 28 180 -9 267 239 218 7 chr4 66480263 66480405 -117808257 + MIR SINE MIR 50 221 -41 281 315 11 22 chr4 66480535 66480624 -117808038 + L2 LINE L2 3185 3272 0 246 389 42 24 chr4 66482253 66482420 -117806242 + MIR3 SINE MIR 20 189 -19 21 36 0 0 chr4 66482668 66482696 -117805966 + AT_rich Low_complexity Low_complexity 1 28 0 193 348 108 43 chr4 66484416 66484794 -117803868 + L2 LINE L2 2140 2623 -691 407 302 68 31 chr4 66485219 66485441 -117803221 - L1ME LINE L1 -371 5750 5521 471 199 15 24 chr4 66486003 66486207 -117802455 + CT-rich Low_complexity Low_complexity 1 202 0 1278 207 30 3 chr4 66487040 66487344 -117801318 - MER33 DNA MER1_type -12 312 1 4487 226 31 3 chr4 66487478 66488490 -117800172 - MER45B DNA AcHobo 0 1040 1 288 319 43 26 chr4 66489186 66489302 -117799360 + MER5A DNA MER1_type 63 180 -9 309 324 46 0 chr4 66490285 66490393 -117798269 - L2 LINE L2 -13 3300 3188 594 264 80 20 chr4 66490442 66490643 -117798019 + MER20 DNA MER1_type 7 219 0 241 347 14 0 chr4 66490791 66490863 -117797799 - L2 LINE L2 -213 3059 2987 23 0 0 0 chr4 66492059 66492082 -117796580 + AT_rich Low_complexity Low_complexity 1 23 0 2000 98 50 34 chr4 66492914 66493211 -117795451 - AluSq SINE Alu -9 304 3 2154 128 0 0 chr4 66493221 66493527 -117795135 - AluSx SINE Alu -6 306 1 895 215 108 39 chr4 66493807 66494157 -117794505 - L1MD2 LINE L1 -12 6230 5905 3840 192 103 67 chr4 66494168 66495473 -117793189 - L1MDa LINE L1 -4124 2416 1065 33 0 0 0 chr4 66495534 66495567 -117793095 + AT_rich Low_complexity Low_complexity 1 33 0 5070 138 11 11 chr4 66495568 66496400 -117792262 - L1PA15 LINE L1 -1 6815 5981 1878 168 56 98 chr4 66496400 66496440 -117792222 - MSTA LTR MaLR 0 428 388 1675 166 38 3 chr4 66496440 66496730 -117791932 + AluJb SINE Alu 1 300 -12 1878 168 56 98 chr4 66496730 66497136 -117791526 - MSTA LTR MaLR -40 388 1 963 112 6 73 chr4 66497136 66497255 -117791407 - MSTA-int LTR MaLR 0 1651 1546 1568 219 17 0 chr4 66497255 66497547 -117791115 + AluJb SINE Alu 1 297 -15 963 112 6 73 chr4 66497547 66497605 -117791057 - MSTA-int LTR MaLR -105 1546 1486 * 1066 181 33 0 chr4 66497591 66497801 -117790861 - MSTA-int LTR MaLR -1434 217 1 2008 186 65 5 chr4 66497801 66498204 -117790458 - MSTA LTR MaLR 0 428 2 14143 236 40 31 chr4 66498213 66499064 -117789598 - L1PA15 LINE L1 -816 5981 5139 1840 172 3 7 chr4 66499064 66499366 -117789296 - AluJo SINE Alu -11 301 1 14143 236 40 31 chr4 66499366 66499901 -117788761 - L1PA15 LINE L1 -1658 5139 4610 2265 116 0 0 chr4 66499901 66500203 -117788459 - AluSx SINE Alu -8 304 3 14143 236 40 31 chr4 66500203 66502013 -117786649 - L1PA15 LINE L1 -2187 4610 2817 2038 141 3 0 chr4 66502013 66502310 -117786352 - AluSq SINE Alu -15 298 1 14143 236 40 31 chr4 66502310 66502500 -117786162 - L1PA15 LINE L1 -3980 2817 2630 1655 127 0 0 chr4 66502500 66502728 -117785934 + AluSq SINE Alu 84 311 -2 14143 236 40 31 chr4 66502728 66503290 -117785372 - L1PA15 LINE L1 -4167 2630 2074 2179 93 13 16 chr4 66503290 66503602 -117785060 - AluY SINE Alu 0 311 1 14143 236 40 31 chr4 66503602 66505083 -117783579 - L1PA15 LINE L1 -4723 2074 1 30 45 0 0 chr4 66505089 66505133 -117783529 + AT_rich Low_complexity Low_complexity 1 44 0 1003 257 122 88 chr4 66505133 66505514 -117783148 - L1MDa LINE L1 -5499 1041 675 2086 140 3 0 chr4 66505514 66505821 -117782841 - AluSx SINE Alu -2 310 3 1003 257 122 88 chr4 66505821 66506272 -117782390 - L1MDa LINE L1 -5865 675 34 276 390 45 0 chr4 66506292 66506446 -117782216 - L3 LINE CR1 -820 757 597 2930 242 32 2 chr4 66506994 66507622 -117781040 - MER82 DNA MER2_type -6 647 1 502 206 18 119 chr4 66507880 66508098 -117780564 - L1MC5 LINE L1 -35 7926 7731 1877 132 0 69 chr4 66508251 66508555 -117780107 - AluSq SINE Alu -30 283 1 22 35 0 0 chr4 66510008 66510037 -117778625 + AT_rich Low_complexity Low_complexity 1 29 0 590 279 53 26 chr4 66510431 66510621 -117778041 + MIR SINE MIR 3 197 -65 277 329 189 0 chr4 66510837 66511001 -117777661 - MIR SINE MIR -48 214 20 257 286 29 38 chr4 66513931 66514036 -117774626 + L2 LINE L2 3163 3266 -6 374 286 131 12 chr4 66514103 66514271 -117774391 + MIR SINE MIR 57 244 -18 210 308 0 39 chr4 66514575 66514653 -117774009 + L2 LINE L2 3017 3091 -181 3307 205 42 21 chr4 66514666 66515423 -117773239 - L1MD2 LINE L1 -16 6343 5571 297 306 33 50 chr4 66515510 66515631 -117773031 + L2 LINE L2 3190 3308 -5 266 373 36 0 chr4 66516067 66516177 -117772485 - L3 LINE CR1 -939 638 525 * 352 299 52 37 chr4 66516163 66516297 -117772365 + L2 LINE L2 1012 1147 -2167 3092 164 45 19 chr4 66516322 66516937 -117771725 - L1MA9 LINE L1 -5 6307 5677 420 85 17 0 chr4 66516937 66516996 -117771666 - MER47A DNA MER2_type -235 131 72 356 252 52 44 chr4 66517036 66517286 -117771376 + L1M4 LINE L1 3167 3418 -2728 407 222 127 8 chr4 66517301 66517427 -117771235 - L1M4 LINE L1 -3326 2820 2680 3894 139 28 10 chr4 66517427 66518112 -117770550 - Tigger3(Golem) DNA MER2_type -1 3028 2332 7745 99 7 16 chr4 66518112 66519708 -117768954 + L1P3 LINE L1 709 2298 -4163 3109 175 47 2 chr4 66519702 66520273 -117768389 - L1P LINE L1 -5545 601 5 * 4998 121 9 54 chr4 66520276 66521128 -117767534 + L1PA13 LINE L1 5339 6152 -9 229 273 45 11 chr4 66523319 66523407 -117765255 - MIR SINE MIR -26 236 146 291 348 101 30 chr4 66523427 66523694 -117764968 + L2 LINE L2 2569 2854 -460 2182 232 51 46 chr4 66526553 66527395 -117761267 - L1M4 LINE L1 -587 5591 4683 572 279 0 8 chr4 66527395 66527524 -117761138 - FLAM_A SINE Alu -5 128 1 2182 232 51 46 chr4 66527524 66527753 -117760909 - L1M4 LINE L1 -1495 4683 4457 3402 186 48 6 chr4 66527753 66528435 -117760227 + MER50 LTR ERV1 1 711 -23 725 241 81 19 chr4 66528474 66528794 -117759868 - L1M4 LINE L1 -1712 4434 4095 1102 8 75 0 chr4 66528820 66528953 -117759709 - AluYb8 SINE Alu -8 310 168 782 265 33 7 chr4 66528953 66529225 -117759437 - L1M4 LINE L1 -2120 4026 3748 709 221 70 74 chr4 66529225 66529483 -117759179 + MER4A LTR ERV1 1 257 -407 1302 206 19 3 chr4 66529675 66530000 -117758662 - L1M4 LINE L1 -2609 3537 3208 438 237 18 18 chr4 66530000 66530114 -117758548 + MER58B DNA MER1_type 210 323 -18 3429 237 38 14 chr4 66530345 66531762 -117756900 - L1P4 LINE L1 -537 5629 4139 63 57 0 0 chr4 66531795 66531900 -117756762 + AT_rich Low_complexity Low_complexity 1 105 0 468 315 35 30 chr4 66531999 66532202 -117756460 - MIR SINE MIR -57 205 2 24 0 0 0 chr4 66532263 66532287 -117756375 + AT_rich Low_complexity Low_complexity 1 24 0 300 245 95 35 chr4 66532322 66532522 -117756140 - MLT1F1 LTR MaLR -5 562 281 271 268 0 0 chr4 66532653 66532724 -117755938 + GA-rich Low_complexity Low_complexity 1 71 0 284 358 75 0 chr4 66532743 66532877 -117755785 - MLT1F1 LTR MaLR -437 153 10 43 35 0 0 chr4 66532991 66533048 -117755614 + AT_rich Low_complexity Low_complexity 1 57 0 31 26 0 0 chr4 66533197 66533235 -117755427 + AT_rich Low_complexity Low_complexity 1 38 0 228 271 0 0 chr4 66533536 66533595 -117755067 - L1MC/D LINE L1 -2144 5664 5606 1641 92 4 0 chr4 66533698 66533925 -117754737 - L1P4 LINE L1 -345 5818 5591 1460 73 99 103 chr4 66533922 66534195 -117754467 + L1PA13 LINE L1 5889 6160 -3 * 341 242 92 13 chr4 66534257 66534410 -117754252 - L1MC/D LINE L1 -753 5393 5229 459 269 17 57 chr4 66535874 66536049 -117752613 - LTR16C LTR ERVL -14 477 310 2152 212 24 96 chr4 66536421 66536610 -117752052 + LTR9 LTR ERV1 1 202 -410 4268 79 5 0 chr4 66536610 66537179 -117751483 + L1PA7 LINE L1 5583 6154 0 2152 212 24 96 chr4 66537179 66537646 -117751016 + LTR9 LTR ERV1 202 610 -2 27 29 0 0 chr4 66537656 66537690 -117750972 + AT_rich Low_complexity Low_complexity 1 34 0 39144 83 11 1 chr4 66537690 66539108 -117749554 - L1PA8 LINE L1 -3 6169 4767 234 62 0 0 chr4 66539108 66539140 -117749522 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 39144 83 11 1 chr4 66539140 66543834 -117744828 - L1PA8 LINE L1 -1405 4767 1 201 162 0 0 chr4 66544049 66544086 -117744576 + T-rich Low_complexity Low_complexity 1 37 0 1130 54 7 0 chr4 66544192 66544339 -117744323 - L1PA4 LINE L1 -3 6152 6005 1221 238 7 23 chr4 66545168 66545471 -117743191 - AluJb SINE Alu -14 298 1 487 316 99 41 chr4 66545510 66545938 -117742724 + L2 LINE L2 2616 3063 -250 291 308 67 11 chr4 66546157 66546496 -117742166 - L1ME3A LINE L1 -146 6024 5622 30 0 0 0 chr4 66546534 66546564 -117742098 + AT_rich Low_complexity Low_complexity 1 30 0 318 276 8 16 chr4 66546596 66546719 -117741943 - L1M4 LINE L1 -3325 2821 2700 1774 160 7 7 chr4 66546723 66547016 -117741646 - AluSx SINE Alu -17 295 3 294 260 21 10 chr4 66547053 66547149 -117741513 + (CATA)n Simple_repeat Simple_repeat 3 99 0 2197 94 13 16 chr4 66547261 66547569 -117741093 - AluSc SINE Alu 0 309 3 5102 123 5 14 chr4 66547577 66547592 -117741070 - L1P LINE L1 -1160 4986 4972 5776 107 3 3 chr4 66547592 66548989 -117739673 - L1PA8 LINE L1 -9 6163 4752 5102 123 5 14 chr4 66548989 66549815 -117738847 - L1P LINE L1 -1174 4972 4153 24 0 0 0 chr4 66549845 66549869 -117738793 + AT_rich Low_complexity Low_complexity 1 24 0 2747 241 67 14 chr4 66550104 66551068 -117737594 + L1MB8 LINE L1 5144 6161 -17 23 33 0 0 chr4 66551080 66551110 -117737552 + AT_rich Low_complexity Low_complexity 1 30 0 29 70 0 0 chr4 66551207 66551264 -117737398 + AT_rich Low_complexity Low_complexity 1 57 0 50 18 0 0 chr4 66551973 66552030 -117736632 + AT_rich Low_complexity Low_complexity 1 57 0 459 133 100 11 chr4 66552877 66552967 -117735695 + MER4A LTR ERV1 1 98 -566 1706 137 0 87 chr4 66553019 66553340 -117735322 + MER4A LTR ERV1 372 664 0 2325 123 74 27 chr4 66553343 66553839 -117734823 + MER4A-int LTR ERV1 1 585 -6013 315 153 14 56 chr4 66553879 66553951 -117734711 + MER4A-int LTR ERV1 736 804 -5794 225 0 0 0 chr4 66553973 66553998 -117734664 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1169 242 45 42 chr4 66554046 66554401 -117734261 + MER4A-int LTR ERV1 1845 2200 -4131 5299 126 91 14 chr4 66554416 66555332 -117733330 + MER4B-int LTR ERV1 200 1185 -5573 3899 94 55 48 chr4 66555330 66556073 -117732589 + MER4B-int LTR ERV1 1748 2495 -4103 * 397 229 162 0 chr4 66556073 66556178 -117732484 - LTR8 LTR ERV1 -434 257 136 319 224 41 20 chr4 66556179 66556277 -117732385 + MER4A-int LTR ERV1 3533 3632 -2966 13758 116 57 13 chr4 66556280 66558591 -117730071 + MER4A-int LTR ERV1 4173 6584 -14 254 156 0 0 chr4 66558598 66558643 -117730019 + MER4A LTR ERV1 1 45 -619 344 82 20 0 chr4 66558664 66558713 -117729949 + MER4A LTR ERV1 261 310 -354 380 85 0 17 chr4 66558762 66558821 -117729841 + MER4A LTR ERV1 607 664 0 27 0 0 0 chr4 66558949 66558976 -117729686 + AT_rich Low_complexity Low_complexity 1 27 0 200 268 0 0 chr4 66560764 66560805 -117727857 + (TG)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chr4 66560878 66560900 -117727762 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 66560991 66561013 -117727649 + AT_rich Low_complexity Low_complexity 1 22 0 222 211 0 0 chr4 66561701 66561739 -117726923 + polypurine Low_complexity Low_complexity 3 40 0 23 0 0 0 chr4 66561972 66561995 -117726667 + AT_rich Low_complexity Low_complexity 1 23 0 2048 130 3 0 chr4 66562007 66562299 -117726363 - AluSg SINE Alu -17 293 1 1744 109 0 21 chr4 66563209 66563448 -117725214 + AluSq SINE Alu 10 243 -70 275 282 17 26 chr4 66563854 66563971 -117724691 - MIR SINE MIR -1 261 146 2159 115 0 0 chr4 66564186 66564482 -117724180 - AluSx SINE Alu -16 296 1 1697 160 6 46 chr4 66564586 66564911 -117723751 - AluJb SINE Alu 0 312 1 269 277 95 29 chr4 66565073 66565210 -117723452 + L2 LINE L2 3168 3313 0 26 74 0 0 chr4 66565749 66565803 -117722859 + AT_rich Low_complexity Low_complexity 1 54 0 1909 138 32 43 chr4 66565926 66566302 -117722360 + THE1C LTR MaLR 1 372 -3 28 29 0 0 chr4 66566562 66566597 -117722065 + AT_rich Low_complexity Low_complexity 1 35 0 666 214 86 39 chr4 66568463 66568697 -117719965 - L1MB8 LINE L1 -2 6176 5932 1040 274 67 21 chr4 66568731 66569162 -117719500 + L1PBa LINE L1 6 456 -6407 2358 116 30 52 chr4 66569176 66569580 -117719082 + MER48 LTR ERV1 4 398 0 34045 121 31 8 chr4 66569580 66574907 -117713755 + HERVH48 LTR ERV1 1 5450 -1204 225 0 0 0 chr4 66574907 66574932 -117713730 + (TTTTTG)n Simple_repeat Simple_repeat 3 27 0 41406 61 1 5 chr4 66574935 66581098 -117707564 - L1PA4 LINE L1 0 6155 18 2576 256 48 18 chr4 66581101 66582948 -117705714 - L1 LINE L1 -3006 3842 1945 425 99 0 14 chr4 66582975 66583046 -117705616 - L1MA3 LINE L1 -1 6304 6235 5803 163 42 17 chr4 66583055 66585056 -117703606 + L1MA1 LINE L1 4256 6298 -4 223 290 14 0 chr4 66586234 66586303 -117702359 - MIR SINE MIR -7 255 186 201 352 92 14 chr4 66586820 66586962 -117701700 + L2 LINE L2 3159 3311 -2 243 0 0 0 chr4 66587202 66587229 -117701433 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 1823 140 88 26 chr4 66588678 66589021 -117699641 - THE1B LTR MaLR 0 364 1 4221 134 3 5 chr4 66589021 66589634 -117699028 - THE1B-int LTR MaLR 0 1580 969 1180 132 116 0 chr4 66589637 66589827 -117698835 - THE1B-int LTR MaLR -870 710 499 2787 212 55 46 chr4 66590152 66590892 -117697770 - L1MB8 LINE L1 -16 6973 6218 5535 158 14 10 chr4 66590892 66591857 -117696805 + LTR5 LTR ERVK 1 969 0 2787 212 55 46 chr4 66591857 66592565 -117696097 - L1MB8 LINE L1 -771 6218 5518 186 43 0 0 chr4 66592565 66592588 -117696074 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1251 209 0 20 chr4 66592591 66592844 -117695818 - AluJo SINE Alu -31 281 34 2054 295 71 16 chr4 66592844 66594062 -117694600 - L1MB8 LINE L1 -1436 5521 4238 554 304 27 11 chr4 66594068 66594252 -117694410 - L1MB8 LINE L1 -6570 289 103 1935 183 12 17 chr4 66594455 66594800 -117693862 + MER61A LTR ERV1 1 343 0 243 0 0 0 chr4 66594807 66594834 -117693828 + (CA)n Simple_repeat Simple_repeat 2 28 0 11301 190 48 12 chr4 66594854 66595897 -117692765 + Tigger1 DNA MER2_type 24 1029 -1389 2206 85 43 0 chr4 66595897 66596179 -117692483 - AluY SINE Alu -15 296 3 11301 190 48 12 chr4 66596179 66597071 -117691591 + Tigger1 DNA MER2_type 1029 2057 -361 4919 125 4 0 chr4 66597071 66597822 -117690840 + L1PA11 LINE L1 5413 6166 -8 11301 190 48 12 chr4 66597822 66598197 -117690465 + Tigger1 DNA MER2_type 2057 2417 -1 4929 223 30 37 chr4 66598211 66600193 -117688469 - L1MB1 LINE L1 -22 6146 3988 4029 179 50 69 chr4 66600193 66601285 -117687377 + MER11C LTR ERVK 1 1071 0 4929 223 30 37 chr4 66601285 66601469 -117687193 - L1MB1 LINE L1 -2180 3988 3804 1433 222 3 10 chr4 66602620 66602913 -117685749 - AluJb SINE Alu -11 301 11 594 330 77 45 chr4 66602946 66603399 -117685263 + L2 LINE L2 2595 3063 -250 303 303 58 33 chr4 66603573 66603984 -117684678 - L1ME3 LINE L1 -75 6087 5622 310 297 21 21 chr4 66604040 66604232 -117684430 - L1MB1 LINE L1 -3279 2867 2676 271 200 12 12 chr4 66604283 66604363 -117684299 + (TA)n Simple_repeat Simple_repeat 1 80 0 2367 260 60 16 chr4 66604684 66605679 -117682983 + L1MB8 LINE L1 5126 6162 -16 221 358 48 36 chr4 66606421 66606586 -117682076 - L2 LINE L2 -188 3084 2918 2228 102 3 0 chr4 66606763 66607058 -117681604 + AluSq SINE Alu 1 296 -17 191 340 21 11 chr4 66607582 66607676 -117680986 - MIR3 SINE MIR 0 208 114 2107 104 0 4 chr4 66608174 66608454 -117680208 - AluSx SINE Alu 0 312 34 198 0 0 0 chr4 66610328 66610350 -117678312 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2215 109 0 3 chr4 66610733 66611035 -117677627 + AluSc SINE Alu 1 301 -8 3108 124 78 90 chr4 66611708 66612258 -117676404 - MER4A LTR ERV1 0 664 122 237 33 0 0 chr4 66612258 66612288 -117676374 + (CAA)n Simple_repeat Simple_repeat 2 31 0 3108 124 78 90 chr4 66612288 66612407 -117676255 - MER4A LTR ERV1 -542 122 3 856 138 63 0 chr4 66612889 66613048 -117675614 - L1PA16 LINE L1 -119 6047 5879 447 84 24 12 chr4 66613149 66613232 -117675430 + (TCTA)n Simple_repeat Simple_repeat 1 84 0 2578 276 43 15 chr4 66613513 66614449 -117674213 - L1MC4a LINE L1 -243 7565 6604 254 333 21 0 chr4 66616824 66616920 -117671742 + Charlie2 DNA MER1_type 225 322 -2460 1009 256 71 49 chr4 66616952 66617423 -117671239 + MER21-int LTR ERV1 1162 4533 -2225 563 193 8 0 chr4 66617505 66617624 -117671038 + MER21-int LTR ERV1 4539 4658 -2100 859 222 22 11 chr4 66617730 66617910 -117670752 + MER21-int LTR ERV1 1673 1854 -2337 3252 121 2 0 chr4 66617915 66618369 -117670293 + L1PA4 LINE L1 3 457 -5689 859 95 0 0 chr4 66618367 66618483 -117670179 - L1P LINE L1 -5564 582 467 * 8303 136 270 13 chr4 66618475 66619181 -117669481 + L1PA4 LINE L1 2834 3357 -2806 7264 39 11 0 chr4 66619181 66620246 -117668416 + L1PA4 LINE L1 5081 6155 0 8303 136 270 13 chr4 66620246 66621523 -117667139 + L1PA4 LINE L1 3357 4304 -1859 796 108 0 0 chr4 66621523 66621634 -117667028 + L1PA7 LINE L1 6037 6147 -7 8303 136 270 13 chr4 66621634 66621796 -117666866 + L1PA4 LINE L1 4304 5565 -598 1625 194 80 24 chr4 66621872 66622248 -117666414 - LTR1B LTR ERV1 0 826 430 633 148 0 9 chr4 66622249 66622392 -117666270 - AluSg/x SINE Alu 0 312 199 1187 219 11 23 chr4 66622393 66622881 -117665781 - LTR1 LTR ERV1 -385 441 7 3326 218 56 22 chr4 66623001 66623919 -117664743 - L1ME1 LINE L1 -5 6161 5227 2915 172 4 21 chr4 66623922 66624481 -117664181 - L1PB3 LINE L1 -1 6153 5605 1938 148 7 13 chr4 66624481 66624786 -117663876 - AluSq SINE Alu -10 303 1 6268 236 16 22 chr4 66624786 66626535 -117662127 - L1PB3 LINE L1 -1669 4477 2740 1439 259 27 56 chr4 66626528 66627119 -117661543 - L1ME1 LINE L1 -1852 4294 3721 * 2086 144 11 11 chr4 66627122 66627475 -117661187 - THE1A LTR MaLR 0 355 3 10856 129 2 1 chr4 66627477 66629054 -117659608 - THE1A-int LTR MaLR 0 1580 1 1527 149 7 36 chr4 66629056 66629118 -117659544 - THE1A LTR MaLR -2 353 291 2358 100 0 0 chr4 66629118 66629427 -117659235 + AluY SINE Alu 1 309 -2 1527 149 7 36 chr4 66629427 66629640 -117659022 - THE1A LTR MaLR -64 291 86 515 247 90 24 chr4 66629656 66629911 -117658751 - L1 LINE L1 -2674 3654 3383 749 224 35 0 chr4 66629930 66630104 -117658558 - MER61E LTR ERV1 -51 518 339 477 211 21 0 chr4 66630333 66630428 -117658234 - LTR25 LTR ERV1 -438 356 260 3152 248 72 21 chr4 66630630 66632236 -117656426 - L1 LINE L1 -2928 3400 1720 1128 163 10 19 chr4 66632242 66632535 -117656127 - MER61A LTR ERV1 -5 338 2 3963 131 17 18 chr4 66632536 66633514 -117655148 - MER61A-int LTR ERV1 0 5217 4191 1377 129 46 8 chr4 66633618 66633858 -117654804 + MER61-int LTR ERV1 1411 1659 -3558 1496 201 19 26 chr4 66633858 66634171 -117654491 - MER61A LTR ERV1 -32 311 1 4427 246 71 18 chr4 66634186 66635529 -117653133 - L1 LINE L1 -4065 1263 265 2036 178 54 7 chr4 66635529 66635934 -117652728 - MSTA LTR MaLR -2 426 3 4427 246 71 18 chr4 66635934 66636214 -117652448 - L1 LINE L1 -5063 265 1 761 315 49 11 chr4 66636222 66636756 -117651906 - L1M4 LINE L1 -876 5270 4717 436 88 0 0 chr4 66636790 66636847 -117651815 + AluSc SINE Alu 230 286 -23 327 247 12 12 chr4 66636848 66636933 -117651729 + L1MC4 LINE L1 6619 6703 -1339 314 267 11 11 chr4 66636959 66637049 -117651613 - L1MC4 LINE L1 -1339 6703 6614 502 278 99 56 chr4 66637052 66637263 -117651399 - L1M4 LINE L1 -1467 4679 4479 2105 132 0 3 chr4 66637263 66637559 -117651103 - AluSg SINE Alu -15 295 1 502 278 99 56 chr4 66637559 66637942 -117650720 - L1M4 LINE L1 -1667 4479 4059 1060 303 57 42 chr4 66638019 66638422 -117650240 - MLT2B3 LTR ERVL -46 508 100 4588 202 20 14 chr4 66638434 66639929 -117648733 + L1PA15 LINE L1 4610 6109 -56 506 170 0 40 chr4 66639958 66640058 -117648604 - MLT2B3 LTR ERVL -424 96 1 354 351 54 11 chr4 66640152 66640525 -117648137 - L1M4 LINE L1 -1809 4337 3949 682 270 101 40 chr4 66640580 66641370 -117647292 - L1M4 LINE L1 -2724 3422 2585 732 294 17 4 chr4 66641403 66641634 -117647028 + L1P3 LINE L1 1 234 -5641 2652 145 2 14 chr4 66641677 66642111 -117646551 - LTR3 LTR ERVK 0 429 1 6463 256 5 2 chr4 66642114 66643569 -117645093 - HERVK3 LTR ERVK -2 7241 5783 1075 138 22 24 chr4 66643550 66643578 -117645084 - MER61-int LTR ERV1 -2813 2404 2377 * 3797 51 2 0 chr4 66643578 66644048 -117644614 - L1PA5 LINE L1 -2 6152 5682 1075 138 22 24 chr4 66644048 66644315 -117644347 - MER61-int LTR ERV1 -2840 2377 2015 479 70 14 0 chr4 66644337 66644408 -117644254 - L1PA4 LINE L1 -4 6151 6080 16801 167 32 16 chr4 66644415 66647392 -117641270 - HERVK3 LTR ERVK -1455 5788 2764 2788 127 12 3 chr4 66647400 66647897 -117640765 - HERVK3 LTR ERVK -6638 605 68 2437 151 26 14 chr4 66647914 66648338 -117640324 - LTR3 LTR ERVK 0 429 1 18000 209 39 16 chr4 66648348 66648737 -117639925 + L1P LINE L1 875 1254 -4892 1800 167 3 3 chr4 66648737 66649024 -117639638 + AluSc SINE Alu 1 287 -22 18000 209 39 16 chr4 66649024 66651367 -117637295 + L1P LINE L1 1254 3742 -2404 189 74 0 0 chr4 66651367 66651394 -117637268 + (CAA)n Simple_repeat Simple_repeat 1 27 0 18000 209 39 16 chr4 66651394 66652940 -117635722 + L1P LINE L1 3742 5251 -895 819 312 55 32 chr4 66653339 66653618 -117635044 + LTR16A LTR ERVL 19 311 -139 1050 243 75 20 chr4 66653618 66653964 -117634698 - MLT1A1 LTR MaLR 0 365 1 819 312 55 32 chr4 66653964 66654085 -117634577 + LTR16A LTR ERVL 311 428 -22 449 345 23 6 chr4 66654112 66654286 -117634376 + HERV16 LTR ERVL 5 181 -4815 2097 214 9 2 chr4 66654485 66654951 -117633711 - MER41D LTR ERV1 0 557 2 411 279 66 0 chr4 66655163 66655285 -117633377 + HERV16 LTR ERVL 589 718 -4278 2184 281 49 30 chr4 66655285 66656364 -117632298 - L1PA13 LINE L1 -3332 3465 2387 797 217 11 0 chr4 66656362 66656546 -117632116 + L1PA12 LINE L1 2824 3009 -4572 * 743 386 24 14 chr4 66657068 66657490 -117631172 - L1PA13 LINE L1 -6361 426 1 3563 264 39 7 chr4 66657502 66657771 -117630891 - L1M4 LINE L1 -780 5366 5107 2409 154 0 0 chr4 66657771 66658135 -117630527 - THE1B LTR MaLR 0 364 1 9170 132 16 60 chr4 66658135 66659789 -117628873 - THE1B-int LTR MaLR 0 1580 1 2381 144 11 0 chr4 66659789 66660149 -117628513 - THE1B LTR MaLR 0 364 1 3563 264 39 7 chr4 66660149 66661206 -117627456 - L1M4 LINE L1 -1038 5108 3943 2604 274 11 4 chr4 66661200 66661988 -117626674 + L1P LINE L1 3151 3944 -2202 * 418 372 14 14 chr4 66661994 66662209 -117626453 + HERV16 LTR ERVL 976 1190 -3806 392 337 36 10 chr4 66662457 66662653 -117626009 + HERV16 LTR ERVL 1608 1808 -3188 322 323 53 32 chr4 66662897 66663086 -117625576 - MLT1C LTR MaLR -49 418 226 264 262 0 0 chr4 66663130 66663191 -117625471 - FLAM SINE Alu -2 131 71 23 33 0 0 chr4 66663387 66663417 -117625245 + AT_rich Low_complexity Low_complexity 1 30 0 310 379 75 47 chr4 66666557 66666958 -117621704 + L1MB2 LINE L1 176 587 -5726 1799 268 41 54 chr4 66667099 66668297 -117620365 + L1MB2 LINE L1 913 1832 -4534 394 242 76 48 chr4 66668349 66668573 -117620089 + L1MB2 LINE L1 1979 2214 -4170 1306 167 36 0 chr4 66668573 66668795 -117619867 + MER30 DNA MER1_type 1 230 0 394 242 76 48 chr4 66668795 66668859 -117619803 + L1MB2 LINE L1 2214 2275 -4109 * 802 201 130 41 chr4 66668849 66669127 -117619535 + L1MB2 LINE L1 3215 3530 -2852 1411 208 7 13 chr4 66669127 66669430 -117619232 + AluJb SINE Alu 3 303 -9 802 201 130 41 chr4 66669430 66669490 -117619172 + L1MB2 LINE L1 3530 3583 -2799 * 3503 198 39 33 chr4 66669486 66669750 -117618912 + L1MB2 LINE L1 5452 5713 -694 288 53 0 0 chr4 66669750 66669788 -117618874 + (CA)n Simple_repeat Simple_repeat 1 38 0 3503 198 39 33 chr4 66669788 66670463 -117618199 + L1MB2 LINE L1 5713 6402 -5 23 0 0 0 chr4 66670493 66670516 -117618146 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr4 66670591 66670613 -117618049 + AT_rich Low_complexity Low_complexity 1 22 0 8586 150 7 10 chr4 66670708 66672379 -117616283 - L1PA8A LINE L1 -574 5557 3898 3652 127 2 0 chr4 66672386 66672915 -117615747 + L1PA8A LINE L1 5581 6110 -21 712 41 8 41 chr4 66672929 66673050 -117615612 + (GAAA)n Simple_repeat Simple_repeat 2 118 0 1069 224 89 46 chr4 66673413 66673783 -117614879 - MLT1B LTR MaLR -2 388 3 198 118 0 0 chr4 66674317 66674351 -117614311 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 233 148 0 19 chr4 66676513 66676567 -117612095 + (TC)n Simple_repeat Simple_repeat 2 54 0 426 261 38 6 chr4 66677024 66677181 -117611481 + HERV30 LTR ERV1 3621 3782 -1154 2210 183 32 16 chr4 66677182 66677618 -117611044 + L1MA10 LINE L1 5831 6277 -57 188 86 29 0 chr4 66677618 66677653 -117611009 + (TA)n Simple_repeat Simple_repeat 1 36 0 2210 183 32 16 chr4 66677653 66677708 -117610954 + L1MA10 LINE L1 6277 6330 -4 20649 97 3 1 chr4 66678227 66680995 -117607667 + HERV30 LTR ERV1 688 3462 -4795 6155 123 14 4 chr4 66680988 66681893 -117606769 + HERV30 LTR ERV1 7344 8257 0 * 4974 81 26 4 chr4 66681894 66682598 -117606064 + LTR30 LTR ERV1 4 722 0 2737 247 102 8 chr4 66682598 66683289 -117605373 + L1M4 LINE L1 4315 4940 -1206 2459 154 0 0 chr4 66683289 66683653 -117605009 + THE1B LTR MaLR 1 364 0 8914 140 17 49 chr4 66683653 66685285 -117603377 + THE1B-int LTR MaLR 1 1580 0 2336 159 0 0 chr4 66685285 66685649 -117603013 + THE1B LTR MaLR 1 364 0 2737 247 102 8 chr4 66685649 66685917 -117602745 + L1M4 LINE L1 4939 5366 -780 740 380 24 19 chr4 66685929 66686353 -117602309 + L1PA13 LINE L1 1 426 -6361 636 224 22 6 chr4 66686875 66687054 -117601608 - L1PA12 LINE L1 -4576 3005 2824 2210 293 30 37 chr4 66687060 66688052 -117600610 + L1PA13 LINE L1 2395 3379 -3418 454 340 54 48 chr4 66688133 66688468 -117600194 - HERV16 LTR ERVL -4276 720 384 2040 213 13 2 chr4 66688469 66688933 -117599729 + MER41D LTR ERV1 2 557 0 489 355 43 21 chr4 66688933 66689308 -117599354 - HERV16 LTR ERVL -4609 387 5 881 306 52 38 chr4 66689320 66689456 -117599206 - LTR16A LTR ERVL -8 442 309 959 257 75 20 chr4 66689456 66689802 -117598860 + MLT1A1 LTR MaLR 1 365 0 881 306 52 38 chr4 66689802 66690084 -117598578 - LTR16A LTR ERVL -141 309 18 1164 239 32 0 chr4 66691777 66692087 -117596575 + L1M4 LINE L1 5499 5818 -366 1247 234 65 39 chr4 66692091 66692552 -117596110 + L1MB8 LINE L1 5706 6178 0 21 57 0 0 chr4 66694380 66694415 -117594247 + AT_rich Low_complexity Low_complexity 1 35 0 213 333 65 20 chr4 66695369 66695522 -117593140 - L2 LINE L2 -2 3311 3152 180 408 19 0 chr4 66695888 66695991 -117592671 - L2 LINE L2 -641 2673 2569 317 252 45 18 chr4 66696011 66696122 -117592540 + MIR SINE MIR 146 259 -3 24 96 0 0 chr4 66697663 66697736 -117590926 + AT_rich Low_complexity Low_complexity 1 73 0 23 0 0 0 chr4 66698575 66698598 -117590064 + AT_rich Low_complexity Low_complexity 1 23 0 232 222 0 0 chr4 66698944 66698989 -117589673 + (CA)n Simple_repeat Simple_repeat 2 46 0 1889 137 0 3 chr4 66700148 66700432 -117588230 + AluSg SINE Alu 5 287 -23 23 0 0 0 chr4 66700589 66700612 -117588050 + AT_rich Low_complexity Low_complexity 1 23 0 45 19 0 0 chr4 66702200 66702252 -117586410 + AT_rich Low_complexity Low_complexity 1 52 0 4991 146 4 1 chr4 66702253 66703071 -117585591 - L1PA13 LINE L1 -1 6162 5343 33 66 0 0 chr4 66704684 66704745 -117583917 + AT_rich Low_complexity Low_complexity 1 61 0 25 31 0 0 chr4 66704784 66704816 -117583846 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr4 66704851 66704873 -117583789 + AT_rich Low_complexity Low_complexity 1 22 0 909 260 47 47 chr4 66704896 66705319 -117583343 - L1MB8 LINE L1 -17 6161 5739 310 278 74 31 chr4 66705365 66705527 -117583135 + L1ME3A LINE L1 2103 2271 -4125 215 188 21 21 chr4 66705613 66705661 -117583001 + (CATATA)n Simple_repeat Simple_repeat 4 51 0 390 280 60 47 chr4 66705667 66705899 -117582763 + L1ME3A LINE L1 2746 2980 -3235 563 315 132 15 chr4 66705900 66706309 -117582353 + L1ME3A LINE L1 5675 6131 -108 26 88 0 0 chr4 66706390 66706458 -117582204 + AT_rich Low_complexity Low_complexity 1 68 0 453 359 84 24 chr4 66706520 66706942 -117581720 - L2 LINE L2 -255 3058 2623 762 113 69 25 chr4 66707074 66707233 -117581429 + L1MA2 LINE L1 6139 6304 0 1144 241 4 0 chr4 66708076 66708304 -117580358 - AluJo SINE Alu -73 239 11 478 236 79 61 chr4 66709499 66709664 -117578998 + LTR41 LTR ERVL 5 172 -601 351 169 65 0 chr4 66709781 66709858 -117578804 + MER97a DNA MER1_type? 254 335 -559 21 36 0 0 chr4 66710224 66710252 -117578410 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 66710485 66710506 -117578156 + AT_rich Low_complexity Low_complexity 1 21 0 307 307 80 63 chr4 66711623 66711910 -117576752 + L1M3b LINE L1 3 294 -5987 387 0 0 0 chr4 66711963 66712006 -117576656 + (CA)n Simple_repeat Simple_repeat 2 44 0 1194 151 0 0 chr4 66712016 66712195 -117576467 - AluSx SINE Alu -133 179 1 228 252 40 33 chr4 66712824 66712975 -117575687 + L1ME4a LINE L1 5900 6051 -70 1790 147 3 30 chr4 66713014 66713314 -117575348 - AluSx SINE Alu -20 292 1 22 0 0 0 chr4 66713703 66713725 -117574937 + AT_rich Low_complexity Low_complexity 1 22 0 35 54 0 0 chr4 66714598 66714654 -117574008 + AT_rich Low_complexity Low_complexity 1 56 0 369 302 54 5 chr4 66714772 66714967 -117573695 + MLT1G3 LTR MaLR 1 218 -228 651 279 21 42 chr4 66715369 66715609 -117573053 + MIR SINE MIR 2 236 -26 628 256 15 40 chr4 66715840 66716039 -117572623 - L1MB5 LINE L1 -1 6173 5980 210 71 0 0 chr4 66716095 66716123 -117572539 + (TAAAA)n Simple_repeat Simple_repeat 5 32 0 2093 242 52 39 chr4 66716261 66716897 -117571765 + MER73 LTR ERVL 1 644 0 1704 321 77 31 chr4 66716939 66717832 -117570830 + L1M4b LINE L1 12 945 -5914 760 276 108 28 chr4 66717860 66718681 -117569981 + L1M4b LINE L1 2479 3332 -3625 600 224 0 81 chr4 66718725 66718899 -117569763 - AluJo SINE Alu -141 171 12 376 118 73 0 chr4 66719124 66719192 -117569470 - L1PA11 LINE L1 0 6174 6102 3021 145 4 0 chr4 66719204 66719666 -117568996 - HERV9 LTR ERV1 -7877 522 59 678 144 0 0 chr4 66719687 66719791 -117568871 - LTR12 LTR ERV1 -130 584 481 327 263 10 0 chr4 66719792 66719891 -117568771 - LTR30 LTR ERV1 -79 643 544 1110 176 54 97 chr4 66719891 66720306 -117568356 - LTR12 LTR ERV1 -437 1983 4 516 274 183 8 chr4 66720306 66720547 -117568115 - L1 LINE L1 -1873 4273 3991 869 230 42 13 chr4 66720774 66721013 -117567649 + PABL_B LTR ERV1 422 667 0 428 252 27 7 chr4 66721014 66721161 -117567501 - L1 LINE L1 -2153 3993 3844 1518 117 8 35 chr4 66721164 66721421 -117567241 - MER52C LTR ERV1 0 1278 1029 7431 153 48 3 chr4 66721421 66722616 -117566046 + THE1-int LTR MaLR 333 1580 0 850 97 0 0 chr4 66722665 66722779 -117565883 - AluY SINE Alu -197 114 1 388 183 42 0 chr4 66722779 66722850 -117565812 - THE1C-int LTR MaLR -1407 173 100 1076 89 0 6 chr4 66722850 66723007 -117565655 - THE1C-int LTR MaLR -1424 156 1 2346 147 5 3 chr4 66723007 66723381 -117565281 - THE1C LTR MaLR 0 375 1 3588 199 17 2 chr4 66723522 66724166 -117564496 + L1PA12 LINE L1 6 659 -6922 1501 316 30 38 chr4 66724117 66724724 -117563938 - L1M4b LINE L1 -6245 614 13 * 2503 148 15 25 chr4 66724805 66725279 -117563383 - L1PA13 LINE L1 0 6163 5695 1009 243 47 0 chr4 66725297 66725592 -117563070 + L1PA7 LINE L1 5050 5352 -799 6212 75 7 0 chr4 66725789 66726604 -117562058 + L1PA7 LINE L1 5329 6149 -5 893 175 16 37 chr4 66726626 66726815 -117561847 + AluJo SINE Alu 112 296 -16 296 202 49 87 chr4 66726823 66727006 -117561656 + L1ME2 LINE L1 5018 5193 -953 278 284 123 39 chr4 66726990 66727194 -117561468 + L1MA9 LINE L1 5724 5944 -245 * 748 202 188 44 chr4 66727084 66727356 -117561306 + L1ME2 LINE L1 5835 6145 -19 230 269 31 62 chr4 66728420 66728580 -117560082 + L1MA9 LINE L1 6117 6271 -41 26361 108 8 13 chr4 66730671 66730684 -117557978 + L1P LINE L1 776 788 -5358 278 50 25 0 chr4 66730684 66730724 -117557938 + (TA)n Simple_repeat Simple_repeat 2 42 0 26361 108 8 13 chr4 66730724 66734726 -117553936 + L1P LINE L1 788 4773 -1373 24 77 0 0 chr4 66735566 66735618 -117553044 + AT_rich Low_complexity Low_complexity 1 52 0 22 35 0 0 chr4 66738947 66738976 -117549686 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 66739626 66739647 -117549015 + AT_rich Low_complexity Low_complexity 1 21 0 583 385 34 16 chr4 66739650 66740144 -117548518 + L1 LINE L1 1 503 -5778 259 355 28 17 chr4 66740535 66740825 -117547837 + L1 LINE L1 1125 1417 -4854 * 1317 230 49 83 chr4 66740817 66741143 -117547519 + L1 LINE L1 3198 3534 -2816 934 263 50 39 chr4 66741143 66741424 -117547238 + AluJo SINE Alu 4 287 -15 1317 230 49 83 chr4 66741424 66741805 -117546857 + L1 LINE L1 3534 3881 -2469 342 123 0 0 chr4 66741811 66741868 -117546794 + (TA)n Simple_repeat Simple_repeat 2 58 0 3605 159 44 36 chr4 66741984 66742458 -117546204 + HUERS-P1 LTR ERV1 2141 2627 -4131 2847 135 53 10 chr4 66742458 66742948 -117545714 - MER9 LTR ERVK 0 511 1 3605 159 44 36 chr4 66742948 66743309 -117545353 + HUERS-P1 LTR ERV1 2627 2983 -3775 1858 155 0 14 chr4 66743309 66743605 -117545057 + AluY SINE Alu 1 292 -19 414 0 0 0 chr4 66743613 66743659 -117545003 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 5440 150 25 11 chr4 66743659 66744010 -117544652 + HUERS-P1 LTR ERV1 3071 3416 -3342 279 54 0 0 chr4 66744010 66744047 -117544615 + (CA)n Simple_repeat Simple_repeat 2 38 0 5440 150 25 11 chr4 66744047 66744615 -117544047 + HUERS-P1 LTR ERV1 3416 4003 -2755 1839 179 37 29 chr4 66744617 66744998 -117543664 + HUERS-P1 LTR ERV1 4241 4624 -2134 * 3586 212 65 25 chr4 66744994 66746076 -117542586 + HUERS-P1 LTR ERV1 4456 5778 -547 851 184 56 39 chr4 66746176 66746410 -117542252 + HUERS-P1 LTR ERV1 5989 6226 -105 592 275 136 21 chr4 66746415 66746651 -117542011 + HUERS-P1 LTR ERV1 5994 6256 -7 457 195 8 32 chr4 66746688 66746811 -117541851 + LTR38B LTR ERV1 1 120 -490 1420 239 28 28 chr4 66747396 66747698 -117540964 + MSTB LTR MaLR 75 379 -47 895 217 118 92 chr4 66747698 66748113 -117540549 - MSTA LTR MaLR -2 426 1 1420 239 28 28 chr4 66748113 66748162 -117540500 + MSTB LTR MaLR 378 426 0 2549 236 8 7 chr4 66748162 66748772 -117539890 + MSTB-int LTR MaLR 1 611 -1040 1993 173 24 11 chr4 66748834 66749204 -117539458 - THE1C LTR MaLR 0 375 1 488 114 13 13 chr4 66749207 66749286 -117539376 - THE1C-int LTR MaLR -4 1576 1498 681 235 56 6 chr4 66749286 66749448 -117539214 + MSTB LTR MaLR 253 422 -4 298 293 9 9 chr4 66749452 66749558 -117539104 + L1P LINE L1 4995 5100 -1046 1474 222 35 32 chr4 66749564 66749938 -117538724 - THE1C LTR MaLR 0 375 1 3689 180 3 6 chr4 66749941 66750568 -117538094 - THE1C-int LTR MaLR -5 1575 951 679 204 12 58 chr4 66750668 66750840 -117537822 - AluJo SINE Alu -108 204 41 1813 226 89 16 chr4 66750841 66751354 -117537308 - MER52C LTR ERV1 -294 984 486 956 278 30 20 chr4 66751373 66751773 -117536889 - L1M4 LINE L1 -2305 4652 4249 419 298 36 24 chr4 66751792 66751960 -117536702 - L1M4 LINE L1 -6572 287 118 21 0 0 0 chr4 66751968 66751989 -117536673 + AT_rich Low_complexity Low_complexity 1 21 0 1902 203 15 12 chr4 66752130 66752530 -117536132 + MER57A LTR ERV1 1 401 -2 236 30 30 0 chr4 66752589 66752622 -117536040 + (CA)n Simple_repeat Simple_repeat 2 35 0 10594 195 55 12 chr4 66752622 66754936 -117533726 + Tigger1 DNA MER2_type 4 2417 -1 571 156 9 9 chr4 66754948 66755057 -117533605 - L1MB1 LINE L1 -16 6152 6044 6623 178 22 48 chr4 66755058 66756431 -117532231 + THE1C-int LTR MaLR 242 1578 -2 1525 186 60 33 chr4 66756434 66756799 -117531863 + THE1C LTR MaLR 1 375 0 2796 219 77 26 chr4 66756799 66757721 -117530941 - L1 LINE L1 -1373 4773 3805 22 0 0 0 chr4 66758107 66758129 -117530533 + AT_rich Low_complexity Low_complexity 1 22 0 999 283 11 3 chr4 66758945 66759228 -117529434 - AluJo SINE Alu -15 287 3 462 288 28 106 chr4 66759267 66759437 -117529225 + L2 LINE L2 2616 2798 -515 1127 167 4 22 chr4 66759437 66759665 -117528997 + L1PA13 LINE L1 5939 6162 -1 462 288 28 106 chr4 66759665 66760031 -117528631 + L2 LINE L2 2798 3104 -209 25 75 0 0 chr4 66760281 66760334 -117528328 + AT_rich Low_complexity Low_complexity 1 53 0 448 280 46 29 chr4 66760342 66760581 -117528081 - L1ME3A LINE L1 -325 5845 5603 469 261 37 14 chr4 66760598 66760813 -117527849 - L1 LINE L1 -3249 2897 2678 657 137 10 0 chr4 66761349 66761451 -117527211 + MER4B-int LTR ERV1 510 612 -6146 309 210 0 126 chr4 66761451 66761570 -117527092 + MER61E LTR ERV1 1 104 -465 1030 211 71 88 chr4 66761619 66762003 -117526659 + MER61E LTR ERV1 92 388 -181 4307 81 5 12 chr4 66762064 66762657 -117526005 + LTR10C LTR ERV1 1 589 -2 1058 205 27 46 chr4 66762662 66762921 -117525741 + MER4B-int LTR ERV1 608 861 -5897 824 227 149 19 chr4 66762921 66763190 -117525472 + MSTA LTR MaLR 114 417 -11 766 125 0 0 chr4 66763257 66763377 -117525285 + MSTA-int LTR MaLR 14 133 -1518 2164 178 28 2 chr4 66763381 66763779 -117524883 + MSTA-int LTR MaLR 1228 1635 -16 1751 179 104 21 chr4 66763780 66763821 -117524841 + MSTA LTR MaLR 7 43 -385 2074 120 80 11 chr4 66763821 66764172 -117524490 + THE1C LTR MaLR 1 375 0 1751 179 104 21 chr4 66764172 66764515 -117524147 + MSTA LTR MaLR 43 423 -5 7814 179 70 70 chr4 66764516 66766288 -117522374 + MER4B-int LTR ERV1 855 2629 -4129 2889 119 62 12 chr4 66766288 66766775 -117521887 - MER9 LTR ERVK 0 511 1 7814 179 70 70 chr4 66766775 66767158 -117521504 + MER4B-int LTR ERV1 2628 3010 -3748 1431 112 0 14 chr4 66767158 66767373 -117521289 - L1PA6 LINE L1 0 6154 5943 244 250 0 22 chr4 66767396 66767488 -117521174 - L1MC4 LINE L1 -1339 6703 6614 230 250 23 0 chr4 66767416 66767504 -117521158 + L1MC4 LINE L1 6614 6703 -1339 * 202 0 146 0 chr4 66767504 66767552 -117521110 + (ATATG)n Simple_repeat Simple_repeat 2 56 0 309 229 127 38 chr4 66767554 66767711 -117520951 + L1MC4 LINE L1 6604 6774 -1268 8300 160 47 11 chr4 66767755 66768001 -117520661 + MER4B-int LTR ERV1 3176 3412 -3346 459 35 0 0 chr4 66768001 66768058 -117520604 + (CA)n Simple_repeat Simple_repeat 2 58 0 8300 160 47 11 chr4 66768058 66769408 -117519254 + MER4B-int LTR ERV1 3412 4867 -1891 255 61 0 0 chr4 66769586 66769619 -117519043 + (TG)n Simple_repeat Simple_repeat 2 34 0 332 219 31 0 chr4 66769685 66769813 -117518849 + (TA)n Simple_repeat Simple_repeat 1 132 0 662 181 101 35 chr4 66769894 66770093 -117518569 - L1M3 LINE L1 -704 5703 5492 316 260 89 32 chr4 66770070 66770316 -117518346 - L1M3 LINE L1 -2848 3534 3275 * 275 266 112 11 chr4 66770384 66770572 -117518090 - L1M3 LINE L1 -4148 2236 2030 775 280 57 55 chr4 66770604 66771094 -117517568 - L1M3 LINE L1 -4460 1924 1434 255 317 112 37 chr4 66771104 66771265 -117517397 - MER5B DNA MER1_type -5 173 1 28 86 0 0 chr4 66773016 66773086 -117515576 + AT_rich Low_complexity Low_complexity 1 70 0 395 368 57 42 chr4 66775108 66775583 -117513079 + L1 LINE L1 3 484 -5797 294 258 118 35 chr4 66775995 66776224 -117512438 + L1 LINE L1 1126 1373 -4908 * 1817 230 71 39 chr4 66776220 66776912 -117511750 + L1 LINE L1 3377 4090 -2260 619 192 76 23 chr4 66777001 66777173 -117511489 + L1MB4 LINE L1 6000 6180 0 21 0 0 0 chr4 66777389 66777410 -117511252 + AT_rich Low_complexity Low_complexity 1 21 0 576 268 51 43 chr4 66777419 66777654 -117511008 - MIR SINE MIR -24 238 2 23 78 0 0 chr4 66777719 66777770 -117510892 + AT_rich Low_complexity Low_complexity 1 51 0 425 236 80 40 chr4 66777770 66777978 -117510684 - MLT1F LTR MaLR -4 538 277 230 239 0 0 chr4 66778102 66778148 -117510514 + GA-rich Low_complexity Low_complexity 1 46 0 203 81 54 0 chr4 66778163 66778200 -117510462 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 362 327 100 0 chr4 66778211 66778361 -117510301 - MLT1F LTR MaLR -423 167 3 23 54 0 0 chr4 66778502 66778539 -117510123 + AT_rich Low_complexity Low_complexity 1 37 0 1694 153 0 0 chr4 66778706 66778955 -117509707 + AluSq SINE Alu 6 254 -59 1337 246 0 0 chr4 66779423 66779691 -117508971 - AluJo SINE Alu -35 277 10 475 236 79 61 chr4 66780891 66781056 -117507606 + LTR41 LTR ERVL 5 172 -601 427 269 95 18 chr4 66781169 66781471 -117507191 + MER97b DNA MER1_type? 254 605 -485 336 288 34 24 chr4 66781924 66782129 -117506533 + MER97c DNA MER1_type? 828 1034 -56 351 278 56 21 chr4 66783167 66783311 -117505351 + MER67A LTR ERV1 395 543 0 397 164 0 0 chr4 66783361 66783434 -117505228 + L1PA11 LINE L1 6101 6173 -1 22 0 0 0 chr4 66784544 66784566 -117504096 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr4 66785132 66785159 -117503503 + AT_rich Low_complexity Low_complexity 1 27 0 375 275 18 24 chr4 66785532 66785699 -117502963 + L1MA9 LINE L1 6118 6283 -29 210 323 58 88 chr4 66786468 66786728 -117501934 - L2 LINE L2 -186 3086 2835 485 170 21 0 chr4 66787302 66787396 -117501266 + L1PA12 LINE L1 5923 6018 -150 7143 99 11 22 chr4 66787398 66788464 -117500198 + MER11C LTR ERVK 3 1057 -14 909 104 35 0 chr4 66788503 66788647 -117500015 + L1PA13 LINE L1 6013 6161 -2 1776 162 0 7 chr4 66788718 66789014 -117499648 + AluSg1 SINE Alu 3 296 -13 204 40 0 0 chr4 66789304 66789329 -117499333 + (TTA)n Simple_repeat Simple_repeat 3 27 0 7142 43 1 9 chr4 66789329 66790735 -117497927 - L1PA4 LINE L1 -18 6137 4737 387 157 0 0 chr4 66790890 66790960 -117497702 + CT-rich Low_complexity Low_complexity 3 72 0 1240 217 3 56 chr4 66790968 66791272 -117497390 - AluJo SINE Alu -24 288 1 909 167 83 6 chr4 66792099 66792255 -117496407 - AluSq SINE Alu -21 292 125 254 143 20 0 chr4 66792502 66792551 -117496111 + GA-rich Low_complexity Low_complexity 2 51 0 341 326 104 7 chr4 66792595 66792739 -117495923 - MLT1G LTR MaLR -423 167 10 23 0 0 0 chr4 66793219 66793242 -117495420 + AT_rich Low_complexity Low_complexity 1 23 0 302 317 19 0 chr4 66794286 66794390 -117494272 + Charlie2 DNA MER1_type 209 314 -2468 468 244 102 8 chr4 66794399 66794526 -117494136 + LTR41 LTR ERVL 3 141 -632 382 294 34 7 chr4 66794686 66794832 -117493830 + MER97b DNA MER1_type? 254 403 -650 256 206 63 16 chr4 66794910 66794973 -117493689 + MER97a DNA MER1_type? 523 588 -306 270 213 126 58 chr4 66795394 66795601 -117493061 + MER97c DNA MER1_type? 814 1034 -56 264 304 52 22 chr4 66796644 66796779 -117491883 + MER67A LTR ERV1 401 539 -4 504 86 0 0 chr4 66796856 66796926 -117491736 + L1PA11 LINE L1 6101 6170 -4 236 123 55 0 chr4 66796939 66797012 -117491650 + (TA)n Simple_repeat Simple_repeat 1 77 0 25178 207 59 33 chr4 66797733 66803792 -117484870 - HERV3 LTR ERV1 -2203 6223 4 583 275 40 40 chr4 66803795 66804071 -117484591 - LTR4 LTR ERV1 -3 593 318 205 191 0 0 chr4 66804432 66804474 -117484188 + T-rich Low_complexity Low_complexity 3 44 0 1167 248 206 39 chr4 66804853 66805373 -117483289 - L1MB4 LINE L1 -8 6172 5566 297 0 0 0 chr4 66805471 66805504 -117483158 + (TG)n Simple_repeat Simple_repeat 2 34 0 1205 237 21 3 chr4 66805823 66806156 -117482506 - L1MB4 LINE L1 -751 5395 5057 613 286 18 32 chr4 66806175 66806395 -117482267 - MIR SINE MIR -44 218 2 22 70 0 0 chr4 66806459 66806502 -117482160 + AT_rich Low_complexity Low_complexity 1 43 0 273 256 80 48 chr4 66806514 66806639 -117482023 - MLT1G1 LTR MaLR 0 555 427 341 336 78 18 chr4 66806877 66807058 -117481604 - MLT1G1 LTR MaLR -362 233 2 30 45 0 0 chr4 66807107 66807151 -117481511 + AT_rich Low_complexity Low_complexity 1 44 0 265 200 9 91 chr4 66808230 66808340 -117480322 + L1MC4 LINE L1 6603 6703 -1339 884 244 3 44 chr4 66808903 66809218 -117479444 - L1PB1 LINE L1 -1490 4656 4355 5069 180 34 8 chr4 66809226 66810663 -117477999 + L1PB1 LINE L1 4671 6146 -5 261 217 245 28 chr4 66810717 66810823 -117477839 - MIR3 SINE MIR -73 135 7 2014 123 0 7 chr4 66811968 66812290 -117476372 - AluSx SINE Alu 0 320 1 954 129 18 0 chr4 66812516 66812679 -117475983 - L1MA2 LINE L1 0 6304 6139 618 355 53 22 chr4 66812797 66813239 -117475423 + L2 LINE L2 2616 3063 -250 22 80 0 0 chr4 66813298 66813348 -117475314 + AT_rich Low_complexity Low_complexity 1 50 0 394 355 46 27 chr4 66813358 66813620 -117475042 - L1ME3A LINE L1 -23 6147 5881 489 303 12 29 chr4 66813624 66813779 -117474883 - L1ME3A LINE L1 -328 5842 5691 3528 167 118 15 chr4 66813779 66814528 -117474134 - LTR1B LTR ERV1 0 826 1 489 303 12 29 chr4 66814528 66814613 -117474049 - L1ME3A LINE L1 -479 5691 5606 622 159 0 0 chr4 66814667 66814774 -117473888 - AluSp/q SINE Alu -7 306 200 1265 131 11 0 chr4 66814774 66814957 -117473705 + AluSx SINE Alu 9 193 -119 252 212 89 55 chr4 66814966 66815112 -117473550 - L1M4 LINE L1 -3264 3693 3543 206 170 0 21 chr4 66815179 66815226 -117473436 + (TA)n Simple_repeat Simple_repeat 2 47 0 2092 224 58 29 chr4 66815569 66816333 -117472329 + L1MB8 LINE L1 5137 5917 -261 252 247 24 12 chr4 66816336 66816421 -117472241 + L1MB8 LINE L1 6074 6159 -19 200 194 0 0 chr4 66817321 66817357 -117471305 + A-rich Low_complexity Low_complexity 4 39 0 4690 145 15 17 chr4 66818260 66818868 -117469794 + L1PA13 LINE L1 5346 5953 -210 3327 100 9 63 chr4 66818868 66819408 -117469254 + MER9 LTR ERVK 1 511 0 4690 145 15 17 chr4 66819408 66819619 -117469043 + L1PA13 LINE L1 5953 6163 0 24 32 0 0 chr4 66819640 66819671 -117468991 + AT_rich Low_complexity Low_complexity 1 31 0 1160 151 36 0 chr4 66821649 66821841 -117466821 - MER30 DNA MER1_type -30 200 2 2682 14 0 0 chr4 66821841 66822138 -117466524 + AluY SINE Alu 1 297 -14 23 68 0 0 chr4 66822198 66822242 -117466420 + AT_rich Low_complexity Low_complexity 1 44 0 181 98 49 0 chr4 66822242 66822283 -117466379 + A-rich Low_complexity Low_complexity 2 44 0 44 56 0 0 chr4 66822286 66822358 -117466304 + AT_rich Low_complexity Low_complexity 1 72 0 366 271 82 34 chr4 66822358 66822565 -117466097 - L1M4 LINE L1 -4205 2754 2538 575 268 58 63 chr4 66822599 66823009 -117465653 - L1M4 LINE L1 -4552 2407 2000 425 117 0 0 chr4 66823155 66823215 -117465447 - AluS SINE Alu -211 101 42 356 265 0 31 chr4 66823528 66823626 -117465036 + L1MC4 LINE L1 6609 6703 -1339 1297 153 85 0 chr4 66825157 66825393 -117463269 + MER75 DNA T2_type 259 514 0 468 275 0 0 chr4 66825396 66825505 -117463157 - FLAM_A SINE Alu -26 116 8 300 323 21 0 chr4 66825525 66825621 -117463041 - L1M4 LINE L1 -6752 107 10 2445 228 53 19 chr4 66825661 66826284 -117462378 - MER73 LTR ERVL 0 644 1 548 265 14 50 chr4 66826472 66826691 -117461971 + L1MB5 LINE L1 5974 6184 0 569 288 27 36 chr4 66826930 66827152 -117461510 - MIR SINE MIR -41 221 2 327 270 72 44 chr4 66827270 66827453 -117461209 - MLT1H1 LTR MaLR 0 555 357 206 274 0 16 chr4 66827602 66827664 -117460998 + GA-rich Low_complexity Low_complexity 2 62 0 315 330 100 3 chr4 66827684 66827819 -117460843 - MLT1G1 LTR MaLR -411 177 1 216 0 0 0 chr4 66828993 66829017 -117459645 + (TA)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr4 66829050 66829072 -117459590 + AT_rich Low_complexity Low_complexity 1 22 0 907 228 4 4 chr4 66829451 66829692 -117458970 - L1 LINE L1 -1490 4656 4416 192 158 0 0 chr4 66829709 66829747 -117458915 + T-rich Low_complexity Low_complexity 1 38 0 2684 201 38 19 chr4 66829798 66830892 -117457770 + L1PB1 LINE L1 4670 5779 -372 291 190 0 0 chr4 66830894 66830952 -117457710 + (CA)n Simple_repeat Simple_repeat 2 59 0 2132 157 5 5 chr4 66830956 66831326 -117457336 + L1PB1 LINE L1 5782 6151 0 788 113 69 25 chr4 66832668 66832827 -117455835 - L1MA2 LINE L1 0 6304 6139 483 364 77 21 chr4 66832959 66833385 -117455277 + L2 LINE L2 2623 3061 -252 26 88 0 0 chr4 66833444 66833512 -117455150 + AT_rich Low_complexity Low_complexity 1 68 0 556 315 130 12 chr4 66833593 66834002 -117454660 - L1ME3A LINE L1 -108 6131 5675 235 247 77 50 chr4 66834003 66834185 -117454477 - L1 LINE L1 -3235 2911 2725 387 261 42 55 chr4 66834378 66834543 -117454119 - L1ME3A LINE L1 -4125 2271 2109 2290 250 60 26 chr4 66834696 66835688 -117452974 + L1MB8 LINE L1 5137 6161 -17 25 31 0 0 chr4 66835765 66835797 -117452865 + AT_rich Low_complexity Low_complexity 1 32 0 31 58 0 0 chr4 66835836 66835888 -117452774 + AT_rich Low_complexity Low_complexity 1 52 0 4924 149 2 5 chr4 66837510 66838327 -117450335 + L1PA13 LINE L1 5347 6161 -2 30 0 0 0 chr4 66838331 66838361 -117450301 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 66838511 66838533 -117450129 + AT_rich Low_complexity Low_complexity 1 22 0 529 304 52 4 chr4 66838821 66839051 -117449611 + HERV16 LTR ERVL 2255 2495 -2501 472 250 42 0 chr4 66839052 66839196 -117449466 + L1 LINE L1 4534 4683 -1463 1879 161 11 73 chr4 66840228 66840694 -117447968 - L1MA10 LINE L1 -4 6330 5894 * 12240 56 0 0 chr4 66840690 66843016 -117445646 - L1PA5 LINE L1 -3 6151 3826 4015 180 34 63 chr4 66843116 66843995 -117444667 - MSTA-int LTR MaLR -726 854 1 254 191 0 0 chr4 66843995 66844042 -117444620 - MSTA LTR MaLR 0 428 382 1828 165 54 20 chr4 66844043 66844395 -117444267 + THE1B LTR MaLR 1 364 0 1701 90 90 0 chr4 66844408 66844674 -117443988 + THE1B-int LTR MaLR 97 386 -1194 221 219 0 0 chr4 66845007 66845048 -117443614 + GA-rich Low_complexity Low_complexity 2 42 0 21 0 0 0 chr4 66845309 66845330 -117443332 + AT_rich Low_complexity Low_complexity 1 21 0 1774 151 29 45 chr4 66947653 66948031 -117340631 - THE1C LTR MaLR -3 372 1 55 16 0 0 chr4 66948213 66948275 -117340387 + AT_rich Low_complexity Low_complexity 1 62 0 303 164 103 36 chr4 66948275 66948440 -117340222 + (TTAAA)n Simple_repeat Simple_repeat 5 180 0 620 209 108 43 chr4 66950835 66951050 -117337612 - L1M4 LINE L1 -596 5582 5355 810 241 29 100 chr4 66951292 66951680 -117336982 - L1M4 LINE L1 -1106 5040 4697 681 246 0 8 chr4 66951680 66951814 -117336848 - FLAM_A SINE Alu 0 133 1 810 241 29 100 chr4 66951814 66951944 -117336718 - L1M4 LINE L1 -1449 4697 4559 4273 207 25 17 chr4 66952279 66953723 -117334939 - L1P4 LINE L1 -568 5598 4139 22 70 0 0 chr4 66953754 66953797 -117334865 + AT_rich Low_complexity Low_complexity 1 43 0 13481 85 3 27 chr4 66954355 66956445 -117332217 - L1P LINE L1 -3252 2894 856 678 335 93 30 chr4 66956619 66957079 -117331583 - L2 LINE L2 0 3313 2825 2055 61 0 8 chr4 66958430 66958694 -117329968 + AluY SINE Alu 34 295 -16 375 23 0 0 chr4 67159603 67159647 -117129015 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 1728 252 9 20 chr4 67160477 67160925 -117127737 + L1MA4A LINE L1 8 450 -6399 * 1973 177 11 0 chr4 67160923 67161296 -117127366 + L1MA4A LINE L1 4045 4421 -2427 25762 66 5 2 chr4 67161401 67165568 -117123094 + L1PA6 LINE L1 1956 6138 -16 1672 196 52 7 chr4 67165977 67166385 -117122277 + L1MA4A LINE L1 4978 5403 -1445 * 2230 147 9 48 chr4 67166380 67166952 -117121710 + L1MA4A LINE L1 5839 6395 -610 2820 179 57 2 chr4 67167008 67167604 -117121058 + L1MA4A LINE L1 6377 7005 0 2087 124 19 3 chr4 67169462 67169769 -117118893 - MER41C LTR ERV1 -242 312 1 294 288 101 29 chr4 67169790 67169929 -117118733 - L2 LINE L2 -818 2496 2348 36 0 0 0 chr4 67170211 67170247 -117118415 + AT_rich Low_complexity Low_complexity 1 36 0 1245 149 130 48 chr4 67170915 67171230 -117117432 + MER4A LTR ERV1 1 341 -323 561 180 258 21 chr4 67171254 67171487 -117117175 + MER4C LTR ERV1 157 444 -21 324 348 0 17 chr4 67171547 67171665 -117116997 + MIR SINE MIR 38 153 -109 2210 62 0 0 chr4 67171940 67172215 -117116447 - AluY SINE Alu 0 311 37 310 278 72 0 chr4 67172355 67172452 -117116210 - MARNA DNA Mariner -342 244 141 315 0 0 0 chr4 67172535 67172570 -117116092 + (TG)n Simple_repeat Simple_repeat 2 36 0 245 291 33 11 chr4 67172867 67172973 -117115689 - MIR SINE MIR -66 142 49 3526 149 37 92 chr4 67173474 67174247 -117114415 + MER44D DNA MER2_type 1 599 -6 23 33 0 0 chr4 67174561 67174591 -117114071 + AT_rich Low_complexity Low_complexity 1 30 0 1904 195 24 0 chr4 67175200 67175574 -117113088 + L1MC3 LINE L1 7292 7674 -111 1705 175 24 0 chr4 67175651 67175948 -117112714 + AluJo SINE Alu 1 304 -8 1996 134 10 0 chr4 67176919 67177226 -117111436 - AluSg SINE Alu 0 310 1 480 238 24 0 chr4 67177429 67177555 -117111107 - L1MC4 LINE L1 -3 8039 7911 * 741 231 164 0 chr4 67177554 67177655 -117111007 - L1MC4 LINE L1 -869 7173 7090 2300 115 0 0 chr4 67177655 67177967 -117110695 - AluSx SINE Alu 0 312 1 741 231 164 0 chr4 67177967 67178121 -117110541 - L1MC4 LINE L1 -952 7090 6876 22 35 0 0 chr4 67178724 67178753 -117109909 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr4 67179309 67179341 -117109321 + AT_rich Low_complexity Low_complexity 1 32 0 2173 86 17 0 chr4 67180048 67180339 -117108323 + AluSp SINE Alu 1 296 -17 874 168 31 21 chr4 67180776 67180967 -117107695 + MER96B DNA MER1_type? 175 367 -50 5230 180 37 5 chr4 67181098 67182935 -117105727 - L1MB2 LINE L1 0 6171 4271 205 386 34 0 chr4 67182999 67183087 -117105575 + L3 LINE CR1 1028 1118 -459 2433 275 70 25 chr4 67184534 67184818 -117103844 - L1MB2 LINE L1 -2654 3492 3222 1780 240 70 55 chr4 67184818 67185435 -117103227 + MLT1E2 LTR MaLR 1 626 0 2433 275 70 25 chr4 67185435 67186424 -117102238 - L1MB2 LINE L1 -2924 3222 2162 1099 227 57 0 chr4 67186427 67186726 -117101936 + MER33 DNA MER1_type 1 316 -8 3242 66 9 0 chr4 67186868 67187293 -117101369 - L1PA8 LINE L1 -6 6166 5738 609 254 146 23 chr4 67187293 67187423 -117101239 - L1MEc LINE L1 -4334 2062 1949 1665 147 138 9 chr4 67187423 67187743 -117100919 - MER46B DNA MER2_type 0 236 1 609 254 146 23 chr4 67187743 67187962 -117100700 - L1MEc LINE L1 -4447 1949 1670 56 67 0 0 chr4 67187962 67188067 -117100595 + AT_rich Low_complexity Low_complexity 1 105 0 463 313 15 38 chr4 67188249 67188514 -117100148 - L1MEc LINE L1 -6116 280 22 250 288 25 0 chr4 67189582 67189662 -117099000 + L1M4 LINE L1 2597 2678 -3468 1517 102 9 5 chr4 67189731 67189946 -117098716 + AluY SINE Alu 82 297 -14 33 0 0 0 chr4 67189959 67189992 -117098670 + AT_rich Low_complexity Low_complexity 1 33 0 27 106 0 0 chr4 67190445 67190549 -117098113 + AT_rich Low_complexity Low_complexity 1 104 0 302 302 121 9 chr4 67190550 67190782 -117097880 + L1M4 LINE L1 2133 2390 -3756 1070 39 0 0 chr4 67191097 67191227 -117097435 - AluY SINE Alu -17 294 165 381 284 40 9 chr4 67191267 67191489 -117097173 + L1M4 LINE L1 2738 2966 -3180 253 146 0 0 chr4 67191505 67191546 -117097116 + L1ME LINE L1 5843 5883 -287 10850 38 5 2 chr4 67191778 67191806 -117096856 + L1P LINE L1 3949 3975 -2171 542 42 0 0 chr4 67191806 67191877 -117096785 - L1PA5 LINE L1 0 6154 6084 10850 38 5 2 chr4 67191877 67193183 -117095479 + L1P LINE L1 3975 5286 -860 477 322 122 8 chr4 67193337 67193691 -117094971 + L1M4 LINE L1 3364 3757 -2389 586 322 81 53 chr4 67193763 67194232 -117094430 + L1M4 LINE L1 3914 4395 -1751 354 343 101 36 chr4 67194218 67194635 -117094027 + L1M4 LINE L1 3557 4000 -2146 * 306 299 57 45 chr4 67195289 67195466 -117093196 + MLT1J LTR MaLR 238 416 -95 485 273 70 61 chr4 67195602 67196031 -117092631 + L1M4 LINE L1 4266 4698 -1448 338 313 62 42 chr4 67196116 67196519 -117092143 + L1M4 LINE L1 4966 5376 -770 1921 165 8 37 chr4 67196586 67196962 -117091700 - MLT1A1 LTR MaLR 0 365 1 306 247 0 13 chr4 67198772 67198849 -117089813 + L1MCa LINE L1 1989 2064 -4362 1864 165 190 29 chr4 67199095 67199363 -117089299 + L1MC3 LINE L1 6528 6751 -1034 207 100 0 0 chr4 67199363 67199393 -117089269 + (CA)n Simple_repeat Simple_repeat 1 30 0 1864 165 190 29 chr4 67199393 67199614 -117089048 + L1MC3 LINE L1 6751 7096 -689 1211 290 16 42 chr4 67199819 67200198 -117088464 + LTR33 LTR ERVL 143 511 -10 21 0 0 0 chr4 67200437 67200458 -117088204 + AT_rich Low_complexity Low_complexity 1 21 0 1925 107 86 0 chr4 67200769 67201049 -117087613 + AluSx SINE Alu 1 304 -8 1001 287 154 32 chr4 67202396 67202582 -117086080 - L2 LINE L2 -24 3289 3127 2240 116 73 14 chr4 67202582 67202926 -117085736 - THE1B LTR MaLR 0 364 1 1001 287 154 32 chr4 67202926 67203522 -117085140 - L2 LINE L2 -186 3127 2394 10198 129 24 7 chr4 67204947 67206566 -117082096 - L1P LINE L1 -4491 1655 10 330 26 0 0 chr4 67206949 67206988 -117081674 + (CA)n Simple_repeat Simple_repeat 1 39 0 245 262 40 63 chr4 67207104 67207230 -117081432 - MER5A DNA MER1_type -24 165 43 208 319 157 41 chr4 67207441 67207786 -117080876 - L2 LINE L2 -692 2622 2238 670 211 37 12 chr4 67208335 67208496 -117080166 + MER3 DNA MER1_type 1 165 -44 702 161 54 0 chr4 67208520 67208632 -117080030 - FLAM_C SINE Alu -15 118 1 388 145 84 0 chr4 67208632 67208709 -117079953 + MER3 DNA MER1_type 125 209 0 283 190 35 0 chr4 67208658 67208716 -117079946 - MER3 DNA MER1_type -109 100 41 * 239 184 143 5 chr4 67208737 67208814 -117079848 + LTR67 LTR ERVL 444 557 0 1477 189 328 36 chr4 67208999 67209474 -117079188 + LTR18B LTR ERVL 1 614 0 255 240 178 39 chr4 67209709 67209838 -117078824 + MIR SINE MIR 66 212 -50 4163 231 38 20 chr4 67210831 67212102 -117076560 - L1MC/D LINE L1 -803 5343 4153 335 118 73 15 chr4 67212296 67212364 -117076298 - AluS SINE Alu -229 72 1 1512 206 31 10 chr4 67212368 67212931 -117075731 + L1MD2 LINE L1 5001 5575 -743 1914 205 11 31 chr4 67212939 67213320 -117075342 + MLT2B3 LTR ERVL 1 373 -181 * 4398 85 18 2 chr4 67213312 67213911 -117074751 + PABL_B LTR ERV1 57 665 -2 2666 214 48 29 chr4 67213977 67214663 -117073999 + L1MD2 LINE L1 5661 6359 0 406 324 150 10 chr4 67214669 67214876 -117073786 + MIR SINE MIR 13 248 -14 847 242 9 28 chr4 67216082 67216297 -117072365 - MLT1A1 LTR MaLR -80 285 75 21 57 0 0 chr4 67216505 67216540 -117072122 + AT_rich Low_complexity Low_complexity 1 35 0 555 16 0 0 chr4 67216560 67216624 -117072038 + (CA)n Simple_repeat Simple_repeat 1 64 0 227 261 0 22 chr4 67216741 67216787 -117071875 - L1M2c LINE L1 -6076 713 669 1974 152 7 0 chr4 67216809 67217111 -117071551 - AluSx SINE Alu -8 304 1 1302 199 66 44 chr4 67217328 67217694 -117070968 - MLT1A2 LTR MaLR 0 374 1 2403 145 29 96 chr4 67218095 67218736 -117069926 + MER4B LTR ERV1 1 779 0 5201 155 15 14 chr4 67218736 67219875 -117068787 + MER4B-int LTR ERV1 1 1196 -5562 3377 118 8 4 chr4 67219878 67220387 -117068275 - MER9 LTR ERVK 0 511 1 287 133 0 0 chr4 67220387 67220432 -117068230 - HERVK9 LTR ERVK 0 5916 5872 * 776 82 0 0 chr4 67220426 67220535 -117068127 - HERVK9 LTR ERVK -186 7055 5635 1947 119 7 0 chr4 67220586 67220864 -117067798 - HERVK9 LTR ERVK -486 5430 5151 363 229 24 0 chr4 67220927 67221010 -117067652 + L1MC4 LINE L1 6615 6699 -1343 244 196 0 0 chr4 67221010 67221056 -117067606 - L1MC4 LINE L1 -1339 6703 6658 588 248 56 12 chr4 67221119 67221280 -117067382 + MER4B-int LTR ERV1 2156 2323 -3623 * 8869 112 75 46 chr4 67221252 67222325 -117066337 + MER4E-int LTR ERV1 1267 2307 -4451 2132 125 0 3 chr4 67222325 67222621 -117066041 + AluSq SINE Alu 1 295 -18 8869 112 75 46 chr4 67222621 67223375 -117065287 + MER4E-int LTR ERV1 2307 2489 -4269 1809 149 18 0 chr4 67223375 67223675 -117064987 - AluSq SINE Alu 0 309 5 8869 112 75 46 chr4 67223675 67224301 -117064361 + MER4E-int LTR ERV1 2489 3095 -3663 713 97 105 0 chr4 67224290 67224404 -117064258 + MER4E-int LTR ERV1 3424 3549 -3209 * 3578 154 46 13 chr4 67224526 67225138 -117063524 + MER4E-int LTR ERV1 3457 4088 -2670 * 4504 108 5 11 chr4 67225122 67225763 -117062899 + MER4E-int LTR ERV1 4438 5074 -1684 2845 92 33 75 chr4 67225776 67226286 -117062376 - LTR21A LTR ERV1 -16 489 1 7847 117 44 8 chr4 67226286 67227863 -117060799 + MER4E-int LTR ERV1 5080 6758 0 2845 119 21 52 chr4 67227866 67228475 -117060187 + MER4E LTR ERV1 5 779 0 296 265 38 32 chr4 67228793 67228978 -117059684 - L1MC4 LINE L1 -734 7308 7123 304 219 9 9 chr4 67228984 67229098 -117059564 + (TA)n Simple_repeat Simple_repeat 1 114 0 11958 204 51 22 chr4 67230421 67232234 -117056428 + L1MA9 LINE L1 2165 4102 -2044 1285 164 39 105 chr4 67232234 67232623 -117056039 + MLT1A1 LTR MaLR 3 365 0 11958 204 51 22 chr4 67232623 67233869 -117054793 + L1MA9 LINE L1 4102 5311 -835 2271 151 14 19 chr4 67233866 67233900 -117054762 + L1MA9 LINE L1 5751 5784 -528 * 294 29 0 0 chr4 67233900 67233935 -117054727 + (CA)n Simple_repeat Simple_repeat 2 36 0 2271 151 14 19 chr4 67233935 67234316 -117054346 + L1MA9 LINE L1 5784 6164 -148 956 212 5 11 chr4 67234886 67235070 -117053592 + MER8 DNA MER2_type 1 183 -56 407 205 0 13 chr4 67235113 67235191 -117053471 - Tigger2 DNA MER2_type -2641 77 1 26 0 0 0 chr4 67235327 67235353 -117053309 + AT_rich Low_complexity Low_complexity 1 26 0 372 185 0 37 chr4 67235688 67235769 -117052893 - L1M4 LINE L1 -1941 4205 4128 322 277 92 40 chr4 67235768 67236115 -117052547 - L1M4 LINE L1 -2570 3576 3212 * 745 333 35 30 chr4 67236481 67236886 -117051776 - MLT1I LTR MaLR 0 409 3 23 68 0 0 chr4 67237111 67237155 -117051507 + AT_rich Low_complexity Low_complexity 1 44 0 1757 102 0 31 chr4 67237995 67238249 -117050413 + AluSg SINE Alu 57 302 -8 302 231 26 0 chr4 67238387 67238465 -117050197 + GA-rich Low_complexity Low_complexity 1 80 0 759 194 136 21 chr4 67238761 67238902 -117049760 - AluJo SINE Alu -27 285 115 180 0 0 0 chr4 67238902 67238922 -117049740 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 759 194 136 21 chr4 67238922 67238971 -117049691 - AluJo SINE Alu -197 115 73 21 0 0 0 chr4 67240075 67240096 -117048566 + AT_rich Low_complexity Low_complexity 1 21 0 232 295 131 33 chr4 67240107 67240229 -117048433 - L2 LINE L2 -2 3270 3137 1711 132 64 0 chr4 67240407 67240688 -117047974 - AluSp SINE Alu -14 299 1 337 322 57 8 chr4 67240688 67240832 -117047830 - MIR SINE MIR -51 211 63 1952 206 13 20 chr4 67241753 67242150 -117046512 - MSTD LTR MaLR -2 394 1 238 371 9 9 chr4 67242299 67242404 -117046258 - L2 LINE L2 -247 3025 2921 236 322 85 0 chr4 67243613 67243731 -117044931 + MER94 DNA DNA 1 128 -6 29 47 0 0 chr4 67244162 67244205 -117044457 + AT_rich Low_complexity Low_complexity 1 43 0 2284 75 31 0 chr4 67244613 67244935 -117043727 - L1PA12 LINE L1 0 6168 5837 235 368 0 23 chr4 67245233 67245320 -117043342 - LTR16A LTR ERVL -255 195 111 23 0 0 0 chr4 67246772 67246795 -117041867 + AT_rich Low_complexity Low_complexity 1 23 0 354 91 0 0 chr4 67247281 67247336 -117041326 + (CA)n Simple_repeat Simple_repeat 2 56 0 2212 104 0 7 chr4 67247527 67247836 -117040826 + AluSc SINE Alu 1 307 -2 563 201 97 7 chr4 67248193 67248347 -117040315 - MER3 DNA MER1_type 0 209 42 1069 138 0 0 chr4 67249071 67249231 -117039431 + AluJb SINE Alu 146 305 -7 1680 163 14 0 chr4 67249240 67249516 -117039146 + AluJb SINE Alu 1 280 -32 290 98 20 0 chr4 67249516 67249567 -117039095 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 253 333 16 16 chr4 67250127 67250253 -117038409 - MER94 DNA DNA -5 129 4 260 339 26 43 chr4 67250286 67250401 -117038261 + LTR67 LTR ERVL 147 259 -298 374 0 22 0 chr4 67250684 67250730 -117037932 + (CA)n Simple_repeat Simple_repeat 2 48 0 498 325 144 33 chr4 67250746 67251255 -117037407 - L2 LINE L2 -40 3273 2708 * 640 246 30 30 chr4 67251254 67251453 -117037209 - L2 LINE L2 0 3313 3115 286 232 0 120 chr4 67252435 67252577 -117036085 - L1MA9 LINE L1 -14 6298 6174 2198 130 125 10 chr4 67252608 67252992 -117035670 - MSTA LTR MaLR 0 428 1 5869 214 26 77 chr4 67252992 67254653 -117034009 - MSTA-int LTR MaLR 0 1580 3 980 151 110 20 chr4 67254653 67254951 -117033711 - MSTA LTR MaLR -8 420 1 938 217 69 0 chr4 67255102 67255305 -117033357 + MIR SINE MIR 2 218 -44 711 219 112 0 chr4 67255438 67255607 -117033055 + MER5A DNA MER1_type 1 188 -1 1952 140 35 27 chr4 67255628 67256000 -117032662 + THE1C LTR MaLR 1 375 0 30 69 0 0 chr4 67256507 67256565 -117032097 + AT_rich Low_complexity Low_complexity 1 58 0 21 0 0 0 chr4 67256758 67256779 -117031883 + AT_rich Low_complexity Low_complexity 1 21 0 25 21 0 43 chr4 67257641 67257666 -117030996 + AT_rich Low_complexity Low_complexity 1 25 -20 2417 30 40 0 chr4 67257666 67257962 -117030700 + AluY SINE Alu 1 308 -3 25 21 0 43 chr4 67257962 67257983 -117030679 + AT_rich Low_complexity Low_complexity 25 45 0 2441 52 7 3 chr4 67258437 67258747 -117029915 - AluY SINE Alu 0 311 1 1732 176 48 6 chr4 67258758 67259115 -117029547 - L1MB3 LINE L1 -2 6181 5810 11629 179 32 11 chr4 67259115 67261414 -117027248 - L1M4c LINE L1 -4024 2360 14 198 258 136 0 chr4 67261426 67261492 -117027170 + L2 LINE L2 3229 3303 -10 22 56 0 0 chr4 67261514 67261550 -117027112 + AT_rich Low_complexity Low_complexity 1 36 0 234 304 38 0 chr4 67261598 67261677 -117026985 - MIR SINE MIR -31 231 150 1118 140 12 12 chr4 67261677 67261848 -117026814 - AluSp SINE Alu -22 291 121 1479 115 32 0 chr4 67261849 67262067 -117026595 + LTR15 LTR ERV1 34 258 -235 992 101 0 0 chr4 67262212 67262341 -117026321 - AluSq/x SINE Alu -184 129 1 23 0 0 0 chr4 67262897 67262920 -117025742 + AT_rich Low_complexity Low_complexity 1 23 0 22 70 0 0 chr4 67263170 67263213 -117025449 + AT_rich Low_complexity Low_complexity 1 43 0 531 338 144 28 chr4 67263782 67264324 -117024338 + L2 LINE L2 2355 2959 -355 694 292 35 12 chr4 67264343 67264677 -117023985 + L1MDa LINE L1 1790 2096 -861 261 206 191 0 chr4 67264826 67264889 -117023773 - L1PA16 LINE L1 -16 6150 6076 433 204 167 0 chr4 67264923 67265031 -117023631 + L1ME LINE L1 5621 5746 -416 231 175 50 12 chr4 67266329 67266409 -117022253 + (TA)n Simple_repeat Simple_repeat 1 83 0 243 0 0 0 chr4 67266446 67266473 -117022189 + (TA)n Simple_repeat Simple_repeat 2 28 0 2573 116 33 21 chr4 67266900 67267322 -117021340 + MSTA LTR MaLR 1 427 -1 326 321 109 18 chr4 67267418 67267583 -117021079 + MIR SINE MIR 71 250 -12 285 322 144 6 chr4 67267663 67267837 -117020825 + MIR3 SINE MIR 4 201 -7 21 0 0 0 chr4 67267892 67267913 -117020749 + AT_rich Low_complexity Low_complexity 1 21 0 872 232 62 0 chr4 67268567 67268766 -117019896 + LTR35 LTR ERV1 1 212 -406 2432 139 38 21 chr4 67268766 67269184 -117019478 + MER83 LTR ERV1 1 425 -23 2208 161 21 40 chr4 67269173 67269594 -117019068 + LTR35 LTR ERV1 206 618 0 * 569 290 16 60 chr4 67269613 67269861 -117018801 + MER83B-int LTR ERV1 414 650 -5296 3508 193 14 15 chr4 67270236 67270992 -117017670 + MER83B-int LTR ERV1 362 1481 -4465 769 144 35 56 chr4 67270979 67271165 -117017497 + MER83B-int LTR ERV1 768 1624 -3256 * 5422 93 109 28 chr4 67271983 67273064 -117015598 - MER11A LTR ERVK 0 1266 1 195 42 0 0 chr4 67275126 67275150 -117013512 + (GGGA)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chr4 67275513 67275541 -117013121 + AT_rich Low_complexity Low_complexity 1 28 0 1052 140 6 0 chr4 67275902 67276066 -117012596 - L1PA16 LINE L1 -9 6157 5993 286 289 79 0 chr4 67276542 67276656 -117012006 + L1MEd LINE L1 597 719 -5400 23 33 0 0 chr4 67276773 67276803 -117011859 + AT_rich Low_complexity Low_complexity 1 30 0 200 265 20 20 chr4 67276934 67277036 -117011626 + A-rich Low_complexity Low_complexity 3 104 0 2381 91 3 0 chr4 67277145 67277453 -117011209 + AluSp SINE Alu 1 309 -4 264 80 0 100 chr4 67277468 67277518 -117011144 + U2 snRNA snRNA 4 48 -140 38 81 0 0 chr4 67278214 67278301 -117010361 + AT_rich Low_complexity Low_complexity 1 87 0 2119 172 11 35 chr4 67278434 67278869 -117009793 - MER61B LTR ERV1 0 425 1 21 36 0 0 chr4 67279854 67279882 -117008780 + AT_rich Low_complexity Low_complexity 1 28 0 15340 111 7 7 chr4 67280333 67281326 -117007336 - L1PA8 LINE L1 -1 6486 5494 225 0 0 0 chr4 67281326 67281351 -117007311 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 15340 111 7 7 chr4 67281351 67283498 -117005164 - L1PA8 LINE L1 -992 5495 3347 596 97 0 21 chr4 67283498 67283580 -117005082 + L1P3 LINE L1 1588 1669 -4792 13421 143 19 29 chr4 67283597 67286884 -117001778 - L1PA8 LINE L1 -3125 3336 6 225 108 0 0 chr4 67287358 67287395 -117001267 + (CA)n Simple_repeat Simple_repeat 2 38 0 205 171 0 0 chr4 67288495 67288530 -117000132 + A-rich Low_complexity Low_complexity 2 36 0 2836 175 8 103 chr4 67288862 67289646 -116999016 - L1 LINE L1 -1287 4859 4151 3222 141 11 25 chr4 67289650 67289852 -116998810 + L1MA7 LINE L1 5088 5291 -1000 2418 123 19 16 chr4 67289852 67290226 -116998436 + THE1C LTR MaLR 1 375 0 3222 141 11 25 chr4 67290226 67290738 -116997924 + L1MA7 LINE L1 5291 5788 -503 244 143 12 48 chr4 67290740 67290824 -116997838 + (TA)n Simple_repeat Simple_repeat 2 82 0 254 275 22 11 chr4 67290824 67290915 -116997747 + L1MC4 LINE L1 6612 6703 -1339 385 220 13 19 chr4 67290915 67291074 -116997588 + (TA)n Simple_repeat Simple_repeat 2 159 0 2269 182 29 14 chr4 67291093 67291582 -116997080 + L1MA7 LINE L1 5794 6289 -2 22 0 0 0 chr4 67291582 67291604 -116997058 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 67292402 67292425 -116996237 + AT_rich Low_complexity Low_complexity 1 23 0 954 227 10 5 chr4 67292532 67292735 -116995927 + L1PB4 LINE L1 5939 6142 -14 185 338 20 73 chr4 67293180 67293331 -116995331 - L2 LINE L2 -154 3118 2976 575 309 8 30 chr4 67293442 67293704 -116994958 - L1MEd LINE L1 -4908 1211 956 21 0 0 0 chr4 67293814 67293835 -116994827 + AT_rich Low_complexity Low_complexity 1 21 0 311 246 7 82 chr4 67294112 67294283 -116994379 + HAL1b LINE L1 352 1593 -854 2029 106 38 0 chr4 67294369 67294661 -116994001 + AluSc SINE Alu 3 305 -4 334 273 159 45 chr4 67294714 67294890 -116993772 + HAL1 LINE L1 1733 1928 -579 197 363 20 0 chr4 67295003 67295105 -116993557 - L2 LINE L2 -640 2674 2571 758 150 8 0 chr4 67295152 67295279 -116993383 - MER41C LTR ERV1 0 554 427 1487 230 30 6 chr4 67295511 67295846 -116992816 - LTR52 LTR ERVL -78 343 1 1266 225 43 0 chr4 67295846 67296104 -116992558 - LTR52-int LTR ERVL 0 3556 3288 10610 199 28 48 chr4 67296166 67296361 -116992301 + L1 LINE L1 2458 2655 -3491 1623 185 10 3 chr4 67296361 67296658 -116992004 + AluJb SINE Alu 1 299 -13 10610 199 28 48 chr4 67296658 67296762 -116991900 + L1 LINE L1 2655 2760 -3386 383 40 0 0 chr4 67296762 67296809 -116991853 + L1PA6 LINE L1 6104 6153 -1 10610 199 28 48 chr4 67296809 67297302 -116991360 + L1 LINE L1 2760 3261 -2885 1791 170 7 0 chr4 67297302 67297617 -116991045 + AluSx SINE Alu 1 317 0 10610 199 28 48 chr4 67297617 67299547 -116989115 + L1 LINE L1 3261 5129 -1017 1143 224 128 55 chr4 67299573 67300025 -116988637 + MER31A LTR ERV1 1 485 0 22 94 0 0 chr4 67300653 67300717 -116987945 + AT_rich Low_complexity Low_complexity 1 64 0 350 248 106 43 chr4 67301029 67301170 -116987492 + HAL1 LINE L1 1153 1302 -1205 887 284 111 21 chr4 67301198 67301585 -116987077 + L2 LINE L2 1524 1945 -1369 2372 154 154 15 chr4 67301601 67302135 -116986527 + L1MD1 LINE L1 5622 6229 -13 186 43 0 0 chr4 67302144 67302167 -116986495 + (TG)n Simple_repeat Simple_repeat 1 23 0 2054 244 43 13 chr4 67302710 67303248 -116985414 + MER74A LTR ERVL 1 554 -4 725 257 23 6 chr4 67303920 67304095 -116984567 + MER5B DNA MER1_type 1 178 0 22 0 0 0 chr4 67304520 67304542 -116984120 + AT_rich Low_complexity Low_complexity 1 22 0 578 286 60 5 chr4 67304615 67304814 -116983848 + L2 LINE L2 2071 2280 -1034 2721 277 85 24 chr4 67304841 67305050 -116983612 + L1ME1 LINE L1 319 514 -5882 1988 158 3 17 chr4 67305050 67305398 -116983264 + MER61A LTR ERV1 1 343 0 2721 277 85 24 chr4 67305398 67306410 -116982252 + L1ME1 LINE L1 514 1615 -4781 1807 272 88 7 chr4 67306410 67307225 -116981437 + L1ME1 LINE L1 3083 3955 -2260 2764 241 29 36 chr4 67307258 67308293 -116980369 + L1ME1 LINE L1 5191 6229 -6 323 266 120 57 chr4 67308380 67308963 -116979699 + L1M4 LINE L1 2143 2762 -3384 3638 169 59 26 chr4 67309474 67310167 -116978495 + MER50 LTR ERV1 1 716 -18 1489 174 29 50 chr4 67310203 67310318 -116978344 + L1MA4 LINE L1 5963 6079 -221 1963 131 0 30 chr4 67310318 67310615 -116978047 + AluSx SINE Alu 1 288 -24 1489 174 29 50 chr4 67310615 67310787 -116977875 + L1MA4 LINE L1 6079 6244 -56 1753 156 57 30 chr4 67310787 67311121 -116977541 - MER61A LTR ERV1 0 343 1 1489 174 29 50 chr4 67311121 67311172 -116977490 + L1MA4 LINE L1 6244 6295 -5 299 291 38 0 chr4 67312275 67312354 -116976308 + MIR SINE MIR 58 139 -69 276 326 75 20 chr4 67312417 67312564 -116976098 - MIR SINE MIR -57 205 51 824 229 162 12 chr4 67312588 67312841 -116975821 + Cheshire DNA MER1_type 1 291 -2129 300 146 42 0 chr4 67312850 67312898 -116975764 + MER66B LTR ERV1 292 341 -145 231 213 0 0 chr4 67312900 67312947 -116975715 + Cheshire DNA MER1_type 2373 2419 -1 267 154 15 221 chr4 67313403 67313539 -116975123 + MER92B LTR ERV1 48 155 -481 1651 186 135 51 chr4 67313574 67314048 -116974614 + MER67D LTR ERV1 1 514 0 304 227 0 53 chr4 67314059 67314134 -116974528 + MER92C LTR ERV1 484 554 0 2878 126 60 37 chr4 67314987 67315604 -116973058 + MER4B LTR ERV1 1 769 -10 305 291 38 0 chr4 67316623 67316702 -116971960 + MIR SINE MIR 104 185 -77 869 353 131 24 chr4 67316711 67317804 -116970858 - L2 LINE L2 -11 3302 2041 1735 60 0 0 chr4 67317804 67318034 -116970628 + AluY SINE Alu 84 313 0 869 353 131 24 chr4 67318034 67318217 -116970445 - L2 LINE L2 -1272 2041 1879 941 162 16 49 chr4 67318322 67318507 -116970155 - AluJo SINE Alu -11 301 123 397 239 26 8 chr4 67318726 67318843 -116969819 - MLT1K LTR MaLR -2 586 468 357 197 0 28 chr4 67318953 67319024 -116969638 - MLT1K LTR MaLR -332 256 188 190 250 115 0 chr4 67320016 67320068 -116968594 + MER5B DNA MER1_type 3 60 -118 374 215 224 9 chr4 67320110 67320217 -116968445 - MER5B DNA MER1_type -48 130 1 25 0 0 0 chr4 67320620 67320645 -116968017 + AT_rich Low_complexity Low_complexity 1 25 0 2390 195 19 65 chr4 67320877 67321454 -116967208 - LTR8 LTR ERV1 0 691 142 3557 134 19 20 chr4 67321454 67322049 -116966613 + MER50 LTR ERV1 1 594 -140 3221 178 45 20 chr4 67322156 67322846 -116965816 + MER67C LTR ERV1 1 707 -3 983 214 154 10 chr4 67322992 67323291 -116965371 + MER2 DNA MER2_type 2 343 -1 342 253 52 84 chr4 67323395 67323549 -116965113 - L2 LINE L2 0 3313 3165 1325 248 45 40 chr4 67323554 67323958 -116964704 + HsTC2 DNA Tc2 30 435 -1463 463 227 36 0 chr4 67324171 67324281 -116964381 + MLT1J LTR MaLR 391 504 -7 394 331 13 7 chr4 67324498 67324649 -116964013 - L2 LINE L2 -620 2694 2543 550 224 6 67 chr4 67324654 67324736 -116963926 + MIR SINE MIR 92 159 -103 3807 133 148 13 chr4 67324736 67325502 -116963160 + MER4D LTR ERV1 1 869 -3 550 224 6 67 chr4 67325502 67325598 -116963064 + MIR SINE MIR 159 259 -3 5168 120 1 4 chr4 67326558 67326919 -116961743 - L1PB1 LINE L1 -8 6143 5783 1032 156 0 0 chr4 67326919 67327099 -116961563 + (TA)n Simple_repeat Simple_repeat 1 180 0 5168 120 1 4 chr4 67327099 67327506 -116961156 - L1PB1 LINE L1 -368 5783 5377 296 294 21 32 chr4 67327773 67327960 -116960702 + L1ME3A LINE L1 5764 5948 -222 6943 197 39 10 chr4 67328240 67329616 -116959046 + MER52A LTR ERV1 379 1754 -1 948 100 15 0 chr4 67330235 67330365 -116958297 - AluY SINE Alu -179 132 1 362 292 62 25 chr4 67330698 67330859 -116957803 + MIR SINE MIR 96 262 0 2099 120 0 17 chr4 67331171 67331471 -116957191 + AluSx SINE Alu 1 295 -17 24 0 0 0 chr4 67332133 67332157 -116956505 + AT_rich Low_complexity Low_complexity 1 24 0 344 252 126 17 chr4 67332338 67332457 -116956205 + L2 LINE L2 3182 3313 0 2763 143 7 15 chr4 67332824 67333286 -116955376 + LTR22A LTR ERVK 1 458 0 6106 132 33 1 chr4 67333288 67333755 -116954907 + HERVK22 LTR ERVK 3 454 -6383 180 0 0 0 chr4 67333755 67333775 -116954887 + (TCC)n Simple_repeat Simple_repeat 1 20 0 6106 132 33 1 chr4 67333775 67334256 -116954406 + HERVK22 LTR ERVK 454 981 -5856 * 15849 114 2 9 chr4 67334248 67336534 -116952128 + HERVK22 LTR ERVK 2248 4516 -2321 4260 145 9 0 chr4 67336538 67337340 -116951322 + HERVK22 LTR ERVK 3188 6837 0 2752 143 13 17 chr4 67337340 67337800 -116950862 + LTR22A LTR ERVK 1 458 0 5919 134 39 1 chr4 67337802 67338263 -116950399 + HERVK22 LTR ERVK 3 445 -6392 180 0 0 0 chr4 67338263 67338283 -116950379 + (TCC)n Simple_repeat Simple_repeat 1 20 0 5919 134 39 1 chr4 67338283 67338764 -116949898 + HERVK22 LTR ERVK 445 981 -5856 436 88 0 0 chr4 67338756 67338813 -116949849 + HERVK22 LTR ERVK 2248 2304 -4533 * 749 159 1 23 chr4 67338813 67339089 -116949573 + LTR22A LTR ERVK 220 458 0 422 158 24 61 chr4 67340186 67340267 -116948395 + Tigger5 DNA MER2_type 1 78 -2245 242 296 0 25 chr4 67340267 67340348 -116948314 - Tigger5 DNA MER2_type -3 2320 2242 * 399 208 0 13 chr4 67340343 67340420 -116948242 + Tigger5 DNA MER2_type 2247 2322 -1 522 172 0 0 chr4 67340616 67340703 -116947959 + Tigger5 DNA MER2_type 2237 2323 0 204 241 0 0 chr4 67341297 67341355 -116947307 + GA-rich Low_complexity Low_complexity 2 59 0 415 378 38 0 chr4 67341600 67341838 -116946824 + L1MEc LINE L1 558 804 -6021 1322 204 43 7 chr4 67341875 67342292 -116946370 - L1M4 LINE L1 -682 5492 5061 5435 96 8 0 chr4 67342368 67343127 -116945535 + L1PA10 LINE L1 5404 6168 0 2996 291 99 17 chr4 67343145 67344135 -116944527 - L1M4b LINE L1 -5777 1082 12 672 192 26 0 chr4 67344142 67344298 -116944364 + L1MB7 LINE L1 6024 6183 -1 532 259 104 66 chr4 67344731 67345389 -116943273 + L1MEc LINE L1 1076 1680 -4862 36390 97 10 7 chr4 67345399 67351533 -116937129 + L1PA6 LINE L1 12 6154 0 837 229 5 0 chr4 67351520 67351730 -116936932 + L1M4 LINE L1 4398 4608 -1538 * 278 294 0 0 chr4 67351778 67351887 -116936775 + L1MEc LINE L1 1662 1770 -4874 316 293 43 14 chr4 67351922 67352062 -116936600 + L1MEc LINE L1 2295 2438 -4387 1020 31 0 0 chr4 67352122 67352251 -116936411 - L1P LINE L1 -727 5428 5300 1480 55 0 0 chr4 67352251 67352431 -116936231 + L1PA3 LINE L1 5972 6152 -3 462 252 87 43 chr4 67352481 67352900 -116935762 + L1MEc LINE L1 2452 2838 -3806 257 70 163 0 chr4 67352924 67352967 -116935695 - MADE1 DNA Mariner -3 77 28 335 64 0 0 chr4 67352981 67353028 -116935634 + MADE1 DNA Mariner 34 80 0 580 246 42 33 chr4 67353028 67353243 -116935419 + L1MEc LINE L1 2837 3053 -3591 1364 207 30 45 chr4 67353245 67353578 -116935084 - MLT1D LTR MaLR -171 334 7 205 245 20 39 chr4 67353991 67354093 -116934569 + CT-rich Low_complexity Low_complexity 2 101 0 21 57 0 0 chr4 67354207 67354242 -116934420 + AT_rich Low_complexity Low_complexity 1 35 0 456 61 24 37 chr4 67354471 67354553 -116934109 + (TTTC)n Simple_repeat Simple_repeat 4 84 0 22 0 0 0 chr4 67354769 67354791 -116933871 + AT_rich Low_complexity Low_complexity 1 22 0 352 328 156 29 chr4 67355247 67355759 -116932903 + L2 LINE L2 2262 3272 0 499 335 30 0 chr4 67357946 67358149 -116930513 - MIR SINE MIR 0 262 54 290 333 0 18 chr4 67358251 67358365 -116930297 + MIR3 SINE MIR 85 196 -12 201 274 55 27 chr4 67358424 67358497 -116930165 + MIR SINE MIR 58 132 -76 346 252 88 27 chr4 67361093 67361240 -116927422 - MER103 DNA DNA -2 164 9 23 33 0 0 chr4 67361670 67361700 -116926962 + AT_rich Low_complexity Low_complexity 1 30 0 7096 55 2 2 chr4 67361804 67363116 -116925546 - L1PA6 LINE L1 -1 6153 4844 921 318 83 7 chr4 67363616 67364063 -116924599 + L2 LINE L2 2820 3300 -13 217 282 28 0 chr4 67364181 67364252 -116924410 + (TATATG)n Simple_repeat Simple_repeat 3 75 0 357 24 0 0 chr4 67364277 67364319 -116924343 + (TAA)n Simple_repeat Simple_repeat 1 42 0 482 202 62 54 chr4 67364351 67364480 -116924182 - MIR SINE MIR -115 147 18 636 266 52 65 chr4 67364578 67364826 -116923836 + MER102b DNA MER1_type 94 338 -3 1746 73 4 16 chr4 67365160 67365406 -116923256 - L1PA7 LINE L1 -1 6153 5911 31 58 0 0 chr4 67366100 67366152 -116922510 + AT_rich Low_complexity Low_complexity 1 52 0 5497 150 21 11 chr4 67366427 67367720 -116920942 - L1MA7 LINE L1 -5 6286 4980 353 268 41 0 chr4 67368474 67368571 -116920091 + MIR SINE MIR 161 261 -1 26 0 0 0 chr4 67368575 67368601 -116920061 + AT_rich Low_complexity Low_complexity 1 26 0 423 280 14 49 chr4 67369639 67369782 -116918880 + L2 LINE L2 3176 3313 0 295 324 116 34 chr4 67371101 67371308 -116917354 - L3 LINE CR1 -65 1512 1289 213 178 0 0 chr4 67373418 67373463 -116915199 + GA-rich Low_complexity Low_complexity 3 47 0 2162 97 10 3 chr4 67374446 67374734 -116913928 + AluSc SINE Alu 1 290 -19 268 393 41 0 chr4 67375106 67375228 -116913434 - MIR SINE MIR -127 135 9 1871 107 10 21 chr4 67375256 67375546 -116913116 + L1PB2 LINE L1 5862 6148 -3 227 73 73 0 chr4 67375546 67375601 -116913061 + (TA)n Simple_repeat Simple_repeat 1 59 0 432 305 79 17 chr4 67376858 67377035 -116911627 + MER5A DNA MER1_type 1 188 -1 295 341 215 4 chr4 67377820 67378066 -116910596 - L3 LINE CR1 -35 1542 1245 1792 172 7 3 chr4 67378928 67379219 -116909443 + AluJo SINE Alu 1 292 -20 2381 121 5 24 chr4 67380282 67380653 -116908009 - THE1B LTR MaLR 0 364 1 11841 93 2 1 chr4 67380655 67382230 -116906432 - THE1B-int LTR MaLR -2 1578 1 2388 117 8 22 chr4 67382230 67382599 -116906063 - THE1B LTR MaLR 0 364 1 2224 85 3 33 chr4 67382859 67383165 -116905497 + AluY SINE Alu 3 299 -12 837 199 0 0 chr4 67383414 67383590 -116905072 + L1MB2 LINE L1 5254 5429 -754 617 99 0 55 chr4 67383590 67383681 -116904981 + 5S rRNA rRNA 1 86 -35 3968 151 20 28 chr4 67383681 67384438 -116904224 + L1MB2 LINE L1 5414 6164 -7 24 91 0 0 chr4 67384438 67384504 -116904158 + AT_rich Low_complexity Low_complexity 1 66 0 547 327 16 48 chr4 67385205 67385437 -116903225 - MIR SINE MIR -16 246 21 458 184 134 104 chr4 67385437 67385638 -116903024 - MER3 DNA MER1_type -1 208 2 547 327 16 48 chr4 67385638 67385653 -116903009 - MIR SINE MIR -241 21 7 378 244 146 34 chr4 67385964 67386169 -116902493 - L1ME LINE L1 -346 5775 5548 1957 133 0 0 chr4 67387747 67388069 -116900593 + AluSx SINE Alu 1 322 0 1208 237 48 42 chr4 67388277 67388610 -116900052 + MER58B DNA MER1_type 1 335 -6 1314 121 0 0 chr4 67388960 67389142 -116899520 + L1PB4 LINE L1 5959 6140 -16 227 130 204 83 chr4 67391011 67391119 -116897543 - MER112 DNA MER1_type -73 187 67 685 243 133 30 chr4 67391131 67391493 -116897169 - HAL1b LINE L1 -145 1203 805 2258 114 0 0 chr4 67392306 67392612 -116896050 - AluSx SINE Alu -6 306 1 431 291 114 59 chr4 67392750 67393056 -116895606 - L3 LINE CR1 -5 1572 1250 249 83 0 0 chr4 67393151 67393187 -116895475 + (TTTTG)n Simple_repeat Simple_repeat 4 39 0 285 346 6 19 chr4 67394971 67395127 -116893535 - MIR SINE MIR -4 258 105 574 348 116 45 chr4 67395324 67396703 -116891959 + L2 LINE L2 1572 3055 -258 349 286 22 84 chr4 67397120 67397298 -116891364 - MIR3 SINE MIR -17 191 25 432 323 66 25 chr4 67397926 67398124 -116890538 + MIR SINE MIR 15 220 -42 2372 56 0 50 chr4 67398733 67399052 -116889610 - AluY SINE Alu -8 303 1 2240 82 0 0 chr4 67400239 67400518 -116888144 - AluY SINE Alu -31 280 2 21 0 0 0 chr4 67401062 67401083 -116887579 + AT_rich Low_complexity Low_complexity 1 21 0 2208 119 3 0 chr4 67401748 67402050 -116886612 + AluSg SINE Alu 1 303 -7 259 284 25 12 chr4 67402588 67402669 -116885993 - LTR67 LTR ERVL -362 195 114 262 349 61 15 chr4 67402851 67402983 -116885679 - MIR SINE MIR -65 197 60 180 0 0 0 chr4 67403723 67403743 -116884919 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1985 111 54 31 chr4 67403755 67404106 -116884556 - THE1B LTR MaLR 0 364 6 11292 100 12 3 chr4 67404112 67405678 -116882984 - THE1B-int LTR MaLR 0 1580 1 1782 134 128 18 chr4 67405678 67406006 -116882656 - THE1B LTR MaLR 0 364 1 1264 197 73 37 chr4 67406038 67406152 -116882510 - MLT2C1 LTR ERVL -2 395 287 2248 123 0 7 chr4 67406152 67406454 -116882208 - AluSg SINE Alu -10 300 1 1264 197 73 37 chr4 67406454 67406720 -116881942 - MLT2C1 LTR ERVL -110 287 1 437 286 18 18 chr4 67407154 67407266 -116881396 - MER5B DNA MER1_type -2 176 65 11757 31 1 3 chr4 67407819 67409312 -116879350 - L1PA4 LINE L1 -904 5242 3753 7123 35 8 6 chr4 67409312 67410193 -116878469 + L1PA4 LINE L1 5272 6154 -1 218 312 52 39 chr4 67410695 67410849 -116877813 - MIR SINE MIR -42 220 65 737 274 118 78 chr4 67410921 67411439 -116877223 - MLT1G LTR MaLR -5 590 10 509 296 23 0 chr4 67411469 67411601 -116877061 - MIR SINE MIR -92 170 36 32 26 0 0 chr4 67411612 67411651 -116877011 + AT_rich Low_complexity Low_complexity 1 39 0 1058 227 127 53 chr4 67411857 67412386 -116876276 - LTR1B LTR ERV1 -211 615 48 1640 188 7 0 chr4 67412406 67412682 -116875980 - AluJo SINE Alu -33 279 2 22 0 0 0 chr4 67413684 67413706 -116874956 + AT_rich Low_complexity Low_complexity 1 22 0 1314 284 22 0 chr4 67414380 67414739 -116873923 + MER115 DNA AcHobo 293 659 -34 2006 123 120 6 chr4 67414890 67415215 -116873447 - THE1B LTR MaLR 0 364 3 227 304 14 43 chr4 67415473 67415680 -116872982 + L1M4 LINE L1 4477 4677 -1469 2184 119 7 0 chr4 67415868 67416162 -116872500 - AluSq SINE Alu -17 296 1 597 366 42 0 chr4 67416195 67416553 -116872109 + L1M4 LINE L1 4934 5306 -840 6039 165 90 69 chr4 67416553 67417388 -116871274 + L1MC3 LINE L1 6009 6825 -960 219 114 0 0 chr4 67417388 67417423 -116871239 + (CA)n Simple_repeat Simple_repeat 2 36 0 6039 165 90 69 chr4 67417423 67417648 -116871014 + L1MC3 LINE L1 6825 7044 -741 272 259 12 12 chr4 67417648 67417733 -116870929 + MLT1F1 LTR MaLR 35 119 -448 6039 165 90 69 chr4 67417733 67418140 -116870522 + L1MC3 LINE L1 7044 7594 -191 728 187 32 0 chr4 67418147 67418302 -116870360 + L1MC2 LINE L1 6175 6334 -10 2028 147 39 0 chr4 67418332 67418665 -116869997 + MLT1A1 LTR MaLR 1 346 -19 483 268 36 12 chr4 67418685 67418853 -116869809 + L1M2 LINE L1 5381 5552 -739 216 0 0 0 chr4 67418919 67418943 -116869719 + (A)n Simple_repeat Simple_repeat 1 24 0 669 239 170 0 chr4 67419950 67420180 -116868482 + L1M4 LINE L1 2384 2652 -3494 * 25804 137 18 21 chr4 67420177 67422677 -116865985 + L1PA7 LINE L1 98 2605 -3864 2248 115 3 0 chr4 67422677 67422972 -116865690 - AluSx SINE Alu -16 296 1 25804 137 18 21 chr4 67422972 67426749 -116861913 + L1PA7 LINE L1 2605 6452 -17 3093 110 15 42 chr4 67426760 67427305 -116861357 + L1MA1 LINE L1 5769 6298 -4 436 278 13 26 chr4 67427371 67427522 -116861140 - MIR SINE MIR -24 238 90 270 143 0 0 chr4 67427740 67427789 -116860873 + (TTCC)n Simple_repeat Simple_repeat 2 50 0 258 273 0 0 chr4 67430144 67430221 -116858441 + (TA)n Simple_repeat Simple_repeat 2 78 0 447 337 20 35 chr4 67430385 67430584 -116858078 + MIR3 SINE MIR 6 201 -7 288 359 47 0 chr4 67430783 67430889 -116857773 + MIR SINE MIR 39 149 -59 319 253 171 35 chr4 67430996 67431166 -116857496 + MIR SINE MIR 70 262 0 223 352 38 0 chr4 67432589 67432694 -116855968 + L2 LINE L2 3150 3258 -14 360 348 114 6 chr4 67432998 67433156 -116855506 + MIR3 SINE MIR 28 202 -6 268 339 9 0 chr4 67433951 67434066 -116854596 + L1MDa LINE L1 34 149 -6391 340 315 109 24 chr4 67434483 67434648 -116854014 + L1MDa LINE L1 779 957 -5573 4638 229 69 32 chr4 67434718 67435282 -116853380 + L1M4 LINE L1 3289 3831 -2315 434 59 176 0 chr4 67435282 67435350 -116853312 - MADE1 DNA Mariner 0 80 1 4638 229 69 32 chr4 67435350 67436486 -116852176 + L1M4 LINE L1 3831 5052 -1094 769 199 12 6 chr4 67437031 67437202 -116851460 - MLT1D LTR MaLR 0 505 334 202 314 106 81 chr4 67437263 67437502 -116851160 - L2 LINE L2 -1668 1646 1392 562 256 8 15 chr4 67437502 67437635 -116851027 - MER94 DNA DNA 0 134 3 202 314 106 81 chr4 67437635 67437790 -116850872 - L2 LINE L2 -1922 1392 1242 482 276 37 8 chr4 67437878 67438012 -116850650 - MIR SINE MIR -124 138 1 212 288 68 0 chr4 67439000 67439059 -116849603 - L2 LINE L2 -1 3312 3250 661 209 40 0 chr4 67440221 67440369 -116848293 + MLT1E2 LTR MaLR 13 166 -460 342 305 62 0 chr4 67440376 67440504 -116848158 - L2 LINE L2 -1340 1974 1839 476 176 39 10 chr4 67440569 67440671 -116847991 + MLT1E2 LTR MaLR 220 324 -181 1320 326 119 19 chr4 67440691 67441550 -116847112 + L2 LINE L2 1686 2630 -684 426 271 12 30 chr4 67441617 67441783 -116846879 + MLT1K LTR MaLR 369 531 -57 252 179 214 0 chr4 67441871 67441927 -116846735 + L2 LINE L2 3203 3270 -2 371 313 60 24 chr4 67441981 67442147 -116846515 - L2 LINE L2 -4 3309 3138 333 289 55 16 chr4 67442461 67442589 -116846073 + MIR SINE MIR 47 179 -83 1483 183 62 10 chr4 67442971 67443260 -116845402 + AluJb SINE Alu 3 306 -6 2542 58 3 0 chr4 67445599 67445907 -116842755 + AluY SINE Alu 1 309 -2 266 265 204 0 chr4 67446217 67446315 -116842347 + MIR SINE MIR 33 150 -58 464 288 140 32 chr4 67446342 67446714 -116841948 + MLT1J LTR MaLR 44 455 -56 1730 160 36 0 chr4 67447328 67447631 -116841031 + AluJb SINE Alu 1 313 0 435 341 13 18 chr4 67448064 67448290 -116840372 + L2 LINE L2 2657 2881 -433 2370 157 44 5 chr4 67448290 67448723 -116839939 + MLT1C LTR MaLR 18 467 0 446 326 36 113 chr4 67448747 67449109 -116839553 + L2 LINE L2 2929 3262 -10 491 340 23 35 chr4 67450167 67450426 -116838236 - MIR SINE MIR 0 262 7 192 40 0 0 chr4 67450729 67450754 -116837908 + (TG)n Simple_repeat Simple_repeat 1 25 0 617 236 39 22 chr4 67651918 67652122 -116636540 + MIR SINE MIR 9 262 0 986 324 220 5 chr4 67652636 67653241 -116635421 + L2 LINE L2 1942 2676 -638 346 299 201 7 chr4 67654819 67654963 -116633699 - MIR SINE MIR -11 251 80 296 345 87 12 chr4 67655498 67655661 -116633001 + MIR SINE MIR 39 212 -50 272 277 0 15 chr4 67657091 67657156 -116631506 + L2 LINE L2 3209 3272 0 21 100 0 0 chr4 67657235 67657305 -116631357 + AT_rich Low_complexity Low_complexity 1 70 0 185 322 165 8 chr4 67657363 67657484 -116631178 + MIR SINE MIR 1 140 -122 235 219 0 0 chr4 67657521 67657562 -116631100 + MIR3 SINE MIR 154 194 -14 307 277 155 38 chr4 67658207 67658420 -116630242 - MIR SINE MIR -13 249 12 537 400 60 0 chr4 67658603 67658888 -116629774 + L2 LINE L2 2967 3268 -4 234 349 15 0 chr4 67660261 67660327 -116628335 + L2 LINE L2 3191 3257 -15 1906 140 0 0 chr4 67660507 67660798 -116627864 - AluY SINE Alu 0 300 10 295 306 37 45 chr4 67663034 67663168 -116625494 + MLT1J2 LTR MaLR 282 414 -36 346 256 81 33 chr4 67664075 67664341 -116624321 + MLT1J2 LTR MaLR 82 407 -39 24 53 0 0 chr4 67664359 67664397 -116624265 + AT_rich Low_complexity Low_complexity 1 38 0 375 351 113 16 chr4 67664972 67665351 -116623311 + L2 LINE L2 2461 2876 -438 235 432 0 0 chr4 67665516 67665611 -116623051 + L2 LINE L2 3116 3210 -62 934 343 84 16 chr4 67665695 67666276 -116622386 - L2 LINE L2 -943 2371 1751 215 267 22 0 chr4 67666724 67666769 -116621893 + L2 LINE L2 3213 3258 -14 183 80 0 0 chr4 67666769 67666794 -116621868 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 34 0 0 0 chr4 67667083 67667117 -116621545 + AT_rich Low_complexity Low_complexity 1 34 0 214 24 0 73 chr4 67670127 67670168 -116618494 + (TAAAA)n Simple_repeat Simple_repeat 4 41 0 38 0 0 0 chr4 67670341 67670379 -116618283 + AT_rich Low_complexity Low_complexity 1 38 0 2325 167 36 0 chr4 67671129 67671542 -116617120 - MSTA LTR MaLR 0 428 1 290 114 0 0 chr4 67671607 67671651 -116617011 - MLT1A1 LTR MaLR -321 44 1 1516 188 14 4 chr4 67671854 67672131 -116616531 + MLT1A1 LTR MaLR 86 365 0 2062 125 3 3 chr4 67673214 67673502 -116615160 + AluSg SINE Alu 1 288 -22 2047 103 38 3 chr4 67673867 67674157 -116614505 - AluY SINE Alu -11 300 1 302 253 0 0 chr4 67674760 67674843 -116613819 - MLT1I LTR MaLR -17 392 310 401 310 116 17 chr4 67674893 67675713 -116612949 - L1M4 LINE L1 -757 5389 4489 35 71 0 0 chr4 67675738 67675808 -116612854 + AT_rich Low_complexity Low_complexity 1 70 0 267 31 0 0 chr4 67675849 67675881 -116612781 + (TTC)n Simple_repeat Simple_repeat 2 33 0 2141 100 7 0 chr4 67675884 67676163 -116612499 - AluSg SINE Alu -29 281 1 276 204 228 12 chr4 67676245 67676412 -116612250 - L1M4 LINE L1 -1799 4347 4145 815 217 6 6 chr4 67676634 67676800 -116611862 - AluJb SINE Alu -13 299 134 277 274 93 15 chr4 67676828 67677032 -116611630 - L1M4 LINE L1 -2323 3823 3604 248 308 51 20 chr4 67677132 67677327 -116611335 - L1M4 LINE L1 -3223 2923 2723 827 86 26 0 chr4 67677495 67677611 -116611051 + AluSc SINE Alu 185 303 -6 905 150 46 0 chr4 67677621 67677774 -116610888 + L1P4 LINE L1 5522 5681 -485 266 313 21 42 chr4 67678507 67678603 -116610059 - MIR SINE MIR -136 126 33 207 395 35 0 chr4 67678708 67678822 -116609840 + L2 LINE L2 3146 3263 -50 244 215 25 0 chr4 67678861 67678940 -116609722 - L1MA8 LINE L1 -2 6289 6209 603 117 0 109 chr4 67678959 67679096 -116609566 - L1M2 LINE L1 -593 5707 5586 190 267 0 0 chr4 67679438 67679483 -116609179 + MIR SINE MIR 75 119 -143 274 341 23 0 chr4 67679513 67679601 -116609061 - L2 LINE L2 -35 3278 3189 24 0 0 0 chr4 67679637 67679661 -116609001 + AT_rich Low_complexity Low_complexity 1 24 0 21388 84 8 4 chr4 67679817 67683605 -116605057 - L1PA6 LINE L1 -9 6145 2340 13926 160 20 29 chr4 67683736 67686365 -116602297 - L1P LINE L1 -3529 2617 11 1860 143 23 74 chr4 67686375 67686720 -116601942 - L1M2 LINE L1 -682 5609 5307 1137 165 10 0 chr4 67686720 67686926 -116601736 - L1MA4 LINE L1 -19 6281 6074 1860 143 23 74 chr4 67686926 67687185 -116601477 - L1M2 LINE L1 -984 5307 5036 340 298 30 46 chr4 67687403 67687534 -116601128 - L2 LINE L2 -10 3303 3175 2500 213 14 84 chr4 67688063 67688703 -116599959 + MLT1A1-int LTR MaLR 1141 1735 0 1997 186 6 11 chr4 67688704 67689070 -116599592 + MLT1A1 LTR MaLR 2 365 0 842 189 42 5 chr4 67689492 67689704 -116598958 + Charlie5 DNA MER1_type 2365 2584 -28 6948 248 53 43 chr4 67690327 67695710 -116592952 + L1MA9 LINE L1 1 5144 -2023 1651 155 10 58 chr4 67695717 67696027 -116592635 + AluSx SINE Alu 1 295 -17 693 214 0 0 chr4 67696033 67696192 -116592470 + (TG)n Simple_repeat Simple_repeat 2 160 0 310 321 0 45 chr4 67696194 67696306 -116592356 - L1MC4 LINE L1 -1322 6720 6614 2137 189 63 13 chr4 67696308 67696358 -116592304 + L1MA9 LINE L1 5147 5193 -1974 2351 67 7 0 chr4 67696358 67696657 -116592005 + AluY SINE Alu 1 301 -10 2137 189 63 13 chr4 67696657 67697162 -116591500 + L1MA9 LINE L1 5193 5730 -1437 * 2740 185 36 78 chr4 67697151 67697896 -116590766 + L1MA9 LINE L1 6499 7212 -121 265 314 114 0 chr4 67697953 67698058 -116590604 + MIR SINE MIR 62 178 -84 203 292 53 58 chr4 67698384 67698534 -116590128 - L2 LINE L2 -950 2364 2214 2337 168 52 2 chr4 67698534 67698938 -116589724 - MSTB LTR MaLR -2 424 1 203 292 53 58 chr4 67698938 67699013 -116589649 - L2 LINE L2 -1100 2214 2140 21 36 0 0 chr4 67699182 67699210 -116589452 + AT_rich Low_complexity Low_complexity 1 28 0 456 156 211 0 chr4 67700064 67700173 -116588489 - LTR24C LTR ERV1 0 635 504 2144 140 25 15 chr4 67700184 67700580 -116588082 - LTR24C LTR ERV1 -194 382 1 417 252 163 53 chr4 67701015 67701261 -116587401 - L2 LINE L2 -196 3076 2804 578 296 43 43 chr4 67701357 67701587 -116587075 - MIR SINE MIR -15 247 18 439 270 30 100 chr4 67701983 67702213 -116586449 + MIR SINE MIR 15 228 -34 22 56 0 0 chr4 67702368 67702404 -116586258 + AT_rich Low_complexity Low_complexity 1 36 0 349 179 11 11 chr4 67703300 67703395 -116585267 + (TA)n Simple_repeat Simple_repeat 1 95 0 215 241 0 48 chr4 67704122 67704205 -116584457 + (TA)n Simple_repeat Simple_repeat 2 80 0 1165 113 131 0 chr4 67705428 67705649 -116583013 - L1MA4 LINE L1 -5 6295 6046 854 264 59 14 chr4 67708714 67708934 -116579728 - MIR SINE MIR -2 260 31 2009 171 49 46 chr4 67709914 67710305 -116578357 + MSTB LTR MaLR 1 392 -34 810 250 66 0 chr4 67710421 67710617 -116578045 - MER63A DNA MER1_type -1 209 1 450 287 66 24 chr4 67711444 67711611 -116577051 - MIR3 SINE MIR -21 187 14 326 300 67 25 chr4 67711786 67711906 -116576756 + L2 LINE L2 3141 3265 -7 317 321 121 14 chr4 67711945 67712085 -116576577 - MER5A DNA MER1_type 0 189 35 312 311 217 12 chr4 67712914 67713236 -116575426 + L2 LINE L2 2805 3192 -121 265 363 0 32 chr4 67713324 67713448 -116575214 + L2 LINE L2 3142 3261 -11 24 77 0 0 chr4 67713600 67713652 -116575010 + AT_rich Low_complexity Low_complexity 1 52 0 287 340 111 33 chr4 67713725 67714031 -116574631 - MER102b DNA MER1_type -11 330 1 468 286 58 44 chr4 67714310 67714516 -116574146 + MIR SINE MIR 54 262 0 2221 108 7 3 chr4 67714799 67715104 -116573558 - AluSq SINE Alu -7 306 1 2441 187 63 13 chr4 67715268 67715819 -116572843 + MER45B DNA AcHobo 462 1040 0 538 305 80 32 chr4 67719197 67719446 -116569216 + MIR SINE MIR 2 262 0 236 287 270 9 chr4 67719841 67719956 -116568706 - MER5A DNA MER1_type 0 189 45 200 264 0 28 chr4 67720052 67720124 -116568538 + CT-rich Low_complexity Low_complexity 1 70 0 382 249 166 17 chr4 67722760 67722941 -116565721 - MER46C DNA MER2_type 0 338 131 2558 190 78 62 chr4 67723304 67724070 -116564592 - MER21B LTR ERV1 -54 877 12 223 275 0 100 chr4 67724139 67724219 -116564443 - MIR SINE MIR -73 189 118 186 281 181 12 chr4 67724680 67724840 -116563822 - MIR3 SINE MIR -18 190 4 281 244 12 49 chr4 67726519 67726601 -116562061 + MIR SINE MIR 166 244 -18 338 202 29 29 chr4 67726905 67727009 -116561653 + HAL1b LINE L1 1191 1294 -54 546 121 12 0 chr4 67727250 67727333 -116561329 + L1 LINE L1 4840 4923 -1223 197 300 33 0 chr4 67727375 67727435 -116561227 - L3 LINE CR1 -23 1554 1493 201 328 78 23 chr4 67727613 67727741 -116560921 - L3 LINE CR1 -264 1313 1179 * 380 326 99 27 chr4 67727724 67728018 -116560644 + L2 LINE L2 2538 2852 -462 222 270 68 0 chr4 67728067 67728141 -116560521 + L2 LINE L2 2971 3049 -223 438 291 143 20 chr4 67728567 67728966 -116559696 - L1ME2 LINE L1 -338 5826 5379 394 337 88 28 chr4 67728966 67729147 -116559515 + MER91A DNA MER1_type 2 193 -3 363 335 79 57 chr4 67729152 67729772 -116558890 - L1ME2 LINE L1 -761 5385 4752 450 284 110 54 chr4 67729941 67730942 -116557720 - L1ME2 LINE L1 -1487 4659 3603 306 292 28 28 chr4 67731168 67731312 -116557350 + MLT1L LTR MaLR 422 565 -50 4330 161 12 43 chr4 67731382 67732688 -116555974 + L1MA5A LINE L1 4814 6076 -221 282 260 104 0 chr4 67733036 67733113 -116555549 - L2 LINE L2 -71 3201 3117 649 214 183 22 chr4 67734031 67734255 -116554407 + MIR SINE MIR 3 262 0 296 311 160 10 chr4 67734419 67734625 -116554037 + L2 LINE L2 2174 2410 -904 929 206 0 0 chr4 67734959 67735134 -116553528 - FAM SINE Alu 0 175 1 347 277 54 103 chr4 67735508 67735732 -116552930 + L2 LINE L2 2992 3204 -68 184 325 0 39 chr4 67735736 67735813 -116552849 + L3 LINE CR1 846 919 -658 * 450 353 18 18 chr4 67735774 67735944 -116552718 + MER5B DNA MER1_type 9 178 0 24 0 0 0 chr4 67736805 67736829 -116551833 + AT_rich Low_complexity Low_complexity 1 24 0 266 26 53 0 chr4 67737015 67737053 -116551609 + (TAAAA)n Simple_repeat Simple_repeat 2 41 0 286 267 228 10 chr4 67737724 67737825 -116550837 - MER5A DNA MER1_type -23 166 44 2073 107 9 50 chr4 67737825 67738142 -116550520 - AluSq SINE Alu -9 304 1 218 267 10 109 chr4 67738142 67738180 -116550482 + MER5A DNA MER1_type 146 186 -3 21 0 0 0 chr4 67741094 67741115 -116547547 + AT_rich Low_complexity Low_complexity 1 21 0 264 59 0 0 chr4 67741827 67741861 -116546801 + (GA)n Simple_repeat Simple_repeat 2 35 0 478 171 122 153 chr4 67741897 67741993 -116546669 + MER58C DNA MER1_type 1 99 -2321 1768 143 0 31 chr4 67741993 67742299 -116546363 - AluJb SINE Alu 0 301 5 478 171 122 153 chr4 67742299 67742423 -116546239 + MER58C DNA MER1_type 99 215 0 21 0 0 0 chr4 67743225 67743246 -116545416 + GC_rich Low_complexity Low_complexity 1 21 0 2051 104 0 14 chr4 67744361 67744693 -116543969 + AluSx SINE Alu 1 328 0 501 270 72 63 chr4 67746557 67746794 -116541868 + MIR SINE MIR 5 243 -19 28 61 0 0 chr4 67747662 67747711 -116540951 + AT_rich Low_complexity Low_complexity 1 49 0 203 122 0 24 chr4 67747729 67747770 -116540892 + (TTA)n Simple_repeat Simple_repeat 1 40 0 270 273 10 91 chr4 67747987 67748086 -116540576 + MIR3 SINE MIR 93 183 -25 327 292 143 77 chr4 67748327 67748663 -116539999 - L1M2 LINE L1 -5658 1191 834 2051 104 0 14 chr4 67749651 67749989 -116538673 + AluSx SINE Alu 1 334 0 213 274 5 16 chr4 67750458 67750538 -116538124 - MIR SINE MIR -74 134 89 509 189 70 21 chr4 67750657 67750800 -116537862 - L1MA8 LINE L1 0 6291 6142 345 328 157 18 chr4 67750940 67751169 -116537493 + MIR SINE MIR 1 261 -1 22 56 0 0 chr4 67751883 67751919 -116536743 + AT_rich Low_complexity Low_complexity 1 36 0 1929 130 0 24 chr4 67751943 67752236 -116536426 + AluSx SINE Alu 1 286 -26 1992 161 78 3 chr4 67752325 67752711 -116535951 - Tigger2 DNA MER2_type 0 2718 2304 788 197 0 0 chr4 67752710 67752852 -116535810 - Tigger2 DNA MER2_type -2575 143 2 * 1248 160 31 56 chr4 67752963 67753393 -116535269 + MER51A LTR ERV1 1 634 0 1927 171 165 58 chr4 67753395 67753892 -116534770 + MER51A-int LTR ERV1 3 552 -7264 251 111 0 143 chr4 67753910 67753973 -116534689 + MER51A-int LTR ERV1 3940 3993 -2683 315 160 53 13 chr4 67753983 67754058 -116534604 + MER51A-int LTR ERV1 3387 3464 -2482 421 264 44 39 chr4 67754068 67754250 -116534412 + MER51A-int LTR ERV1 659 841 -6975 377 236 0 0 chr4 67754394 67754485 -116534177 + MER51A-int LTR ERV1 1537 1625 -5051 293 260 36 36 chr4 67754997 67755237 -116533425 + MER51A-int LTR ERV1 1647 2324 -5432 260 218 0 0 chr4 67755857 67755912 -116532750 + MER51A-int LTR ERV1 2640 2694 -5732 1662 303 52 58 chr4 67756068 67759074 -116529588 + MER51A-int LTR ERV1 2972 6156 -1146 361 51 51 0 chr4 67759267 67759326 -116529336 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 1729 186 0 3 chr4 67759415 67759732 -116528930 + MER51A-int LTR ERV1 7501 7816 0 1104 158 113 42 chr4 67759733 67760164 -116528498 + MER51A LTR ERV1 1 634 0 282 276 182 10 chr4 67760204 67760407 -116528255 - L2 LINE L2 -1 3312 3075 296 295 67 54 chr4 67760552 67760701 -116527961 + MER5A DNA MER1_type 25 175 -14 1820 136 66 0 chr4 67761329 67761601 -116527061 - AluSx SINE Alu -20 292 3 2212 108 0 10 chr4 67761736 67762043 -116526619 - AluSg SINE Alu -6 304 1 24 32 0 0 chr4 67762893 67762924 -116525738 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr4 67763339 67763364 -116525298 + AT_rich Low_complexity Low_complexity 1 25 0 226 254 0 14 chr4 67763470 67763541 -116525121 + (TA)n Simple_repeat Simple_repeat 2 71 0 408 282 7 54 chr4 67763923 67764072 -116524590 + MIR SINE MIR 104 245 -17 820 259 50 93 chr4 67764395 67764870 -116523792 + MLT1J LTR MaLR 54 508 -3 2328 181 152 0 chr4 67764918 67765450 -116523212 - MER90 LTR ERV1 -1 613 1 198 207 0 86 chr4 67765456 67765514 -116523148 + L2 LINE L2 3261 3313 0 514 293 101 5 chr4 67766040 67766238 -116522424 - MIR SINE MIR -44 218 2 356 284 105 126 chr4 67766857 67767191 -116521471 - L2 LINE L2 -4 3268 2942 204 67 0 0 chr4 67768371 67768401 -116520261 + (TA)n Simple_repeat Simple_repeat 1 30 0 1676 201 3 10 chr4 67768505 67768819 -116519843 - AluSx SINE Alu 0 312 1 328 306 18 59 chr4 67768906 67769076 -116519586 - HAL1b LINE L1 -440 908 746 29 0 0 0 chr4 67769102 67769131 -116519531 + AT_rich Low_complexity Low_complexity 1 29 0 185 0 40 0 chr4 67769302 67769327 -116519335 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 540 244 62 31 chr4 67769438 67769663 -116518999 - HAL1 LINE L1 -848 1659 1428 22 35 0 0 chr4 67769676 67769705 -116518957 + AT_rich Low_complexity Low_complexity 1 29 0 346 331 32 8 chr4 67771099 67771223 -116517439 + MIR SINE MIR 14 140 -122 403 275 6 6 chr4 67771883 67772054 -116516608 + CT-rich Low_complexity Low_complexity 4 174 0 291 277 62 54 chr4 67772313 67772443 -116516219 + MIR SINE MIR 53 183 -79 2295 90 0 0 chr4 67772863 67773153 -116515509 - AluSq SINE Alu -23 290 1 616 308 142 27 chr4 67773203 67773570 -116515092 - L2 LINE L2 0 3313 2905 3218 139 2 62 chr4 67773595 67774156 -116514506 + MER1A DNA MER1_type 1 527 0 433 96 0 149 chr4 67775933 67776027 -116512635 + MADE1 DNA Mariner 1 80 0 256 288 173 14 chr4 67776334 67776473 -116512189 + L2 LINE L2 2679 2839 -475 291 366 32 98 chr4 67776543 67777015 -116511647 + L2 LINE L2 2830 3270 -2 201 255 10 92 chr4 67777121 67777219 -116511443 + MER5A DNA MER1_type 28 117 -72 288 0 0 0 chr4 67778082 67778114 -116510548 + (TA)n Simple_repeat Simple_repeat 1 32 0 427 338 103 40 chr4 67778711 67779291 -116509371 - L2 LINE L2 -1 3312 2630 880 241 168 37 chr4 67779469 67779850 -116508812 - L2 LINE L2 -2 3311 2881 1625 127 0 17 chr4 67779852 67780088 -116508574 + AluSq SINE Alu 10 241 -72 1314 67 0 0 chr4 67780088 67780266 -116508396 + (CAAGG)n Simple_repeat Simple_repeat 1 178 0 489 243 0 0 chr4 67780308 67780452 -116508210 + (CAT)n Simple_repeat Simple_repeat 1 144 0 467 320 52 23 chr4 67780615 67780787 -116507875 - MER5A DNA MER1_type -6 183 7 2313 92 3 7 chr4 67782150 67782456 -116506206 - AluY SINE Alu -6 305 1 23 33 0 67 chr4 67783818 67783849 -116504813 + AT_rich Low_complexity Low_complexity 1 28 -28 1842 158 7 3 chr4 67783849 67784146 -116504516 + AluJo SINE Alu 1 298 -14 23 33 0 67 chr4 67784146 67784174 -116504488 + AT_rich Low_complexity Low_complexity 28 56 0 711 249 20 3 chr4 67784375 67784538 -116504124 + MER5B DNA MER1_type 8 189 0 475 299 89 0 chr4 67784538 67784694 -116503968 - MER5B DNA MER1_type -6 172 3 2223 86 3 13 chr4 67786830 67787164 -116501498 - AluSp SINE Alu 0 313 1 2060 135 0 10 chr4 67787332 67787636 -116501026 - AluSg SINE Alu -9 301 1 495 312 48 21 chr4 67787818 67788004 -116500658 - MIR SINE MIR -65 197 7 215 292 67 45 chr4 67788017 67788106 -116500556 + L2 LINE L2 3182 3272 0 411 270 72 23 chr4 67788135 67788415 -116500247 + MER90 LTR ERV1 35 370 -244 867 276 43 30 chr4 67788528 67788923 -116499739 + MER90 LTR ERV1 77 476 -99 4050 163 86 10 chr4 67789154 67789759 -116498903 - MER6 DNA MER2_type 0 865 183 234 91 0 0 chr4 67789759 67789792 -116498870 + (CA)n Simple_repeat Simple_repeat 1 33 0 4050 163 86 10 chr4 67789792 67789988 -116498674 - MER6 DNA MER2_type -682 183 3 208 227 0 0 chr4 67791170 67791214 -116497448 + MER5C DNA MER1_type 78 121 -203 258 202 67 22 chr4 67791745 67791834 -116496828 + L1ME LINE L1 5725 5817 -304 1667 137 52 36 chr4 67792467 67792607 -116496055 + AluJo SINE Alu 1 137 -330 2036 141 0 0 chr4 67792607 67792921 -116495741 + AluSx SINE Alu 1 314 0 1667 137 52 36 chr4 67792921 67793241 -116495421 + AluJo SINE Alu 137 467 0 21 0 0 0 chr4 67793304 67793325 -116495337 + AT_rich Low_complexity Low_complexity 1 21 0 415 286 100 17 chr4 67793575 67793816 -116494846 + LTR16B LTR ERVL 139 399 -65 282 221 12 12 chr4 67793853 67793939 -116494723 - L1ME4a LINE L1 -220 5901 5816 230 305 0 9 chr4 67794162 67794267 -116494395 - L1ME4a LINE L1 -359 5762 5659 4004 137 30 25 chr4 67794534 67795500 -116493162 + pTR5 LTR ERV1 741 2027 -411 306 234 11 0 chr4 67795502 67795596 -116493066 + LTR30 LTR ERV1 548 642 -80 1475 73 18 5 chr4 67795599 67795817 -116492845 + pTR5 LTR ERV1 172 392 -2046 22 0 0 0 chr4 67796028 67796050 -116492612 + AT_rich Low_complexity Low_complexity 1 22 0 612 261 79 18 chr4 67796091 67796256 -116492406 - MIR SINE MIR 0 262 88 2012 231 112 23 chr4 67796315 67797106 -116491556 + L1MC4 LINE L1 7006 7894 -148 24 77 0 0 chr4 67797190 67797242 -116491420 + AT_rich Low_complexity Low_complexity 1 52 0 356 307 36 0 chr4 67797282 67797422 -116491240 + L1ME4a LINE L1 5616 5760 -361 2245 101 0 3 chr4 67797447 67797734 -116490928 + AluSg SINE Alu 1 286 -24 360 43 75 21 chr4 67797734 67797828 -116490834 + (TA)n Simple_repeat Simple_repeat 1 99 0 282 214 111 17 chr4 67797833 67797950 -116490712 + L1ME4a LINE L1 5799 5926 -195 21 57 0 0 chr4 67798538 67798573 -116490089 + AT_rich Low_complexity Low_complexity 1 35 0 234 294 39 59 chr4 67799794 67799896 -116488766 + MIR SINE MIR 53 152 -110 201 281 178 14 chr4 67799916 67800062 -116488600 + MIR3 SINE MIR 21 190 -18 219 275 0 100 chr4 67800523 67800603 -116488059 + MIR SINE MIR 118 189 -73 2379 191 78 57 chr4 67800672 67801438 -116487224 + MER21B LTR ERV1 12 877 -54 328 249 166 17 chr4 67801801 67801982 -116486680 + MER46C DNA MER2_type 131 338 0 200 264 0 28 chr4 67804609 67804681 -116483981 + GA-rich Low_complexity Low_complexity 1 70 0 239 287 270 9 chr4 67804777 67804892 -116483770 + MER5A DNA MER1_type 45 189 0 538 305 80 32 chr4 67805287 67805536 -116483126 - MIR SINE MIR 0 262 2 478 346 156 32 chr4 67808263 67808492 -116480170 + L2 LINE L2 2500 2699 -615 243 0 0 0 chr4 67808492 67808519 -116480143 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1899 23 0 0 chr4 67808521 67808742 -116479920 - L1PA4 LINE L1 -13 6142 5922 478 346 156 32 chr4 67808742 67808913 -116479749 + L2 LINE L2 2699 2953 -361 438 248 67 33 chr4 67809000 67809161 -116479501 + MIR SINE MIR 53 218 -44 288 241 146 29 chr4 67809193 67809330 -116479332 + L2 LINE L2 3160 3312 -1 195 267 23 58 chr4 67809606 67809692 -116478970 + MIR SINE MIR 33 115 -147 186 363 92 45 chr4 67809828 67810120 -116478542 + L2 LINE L2 2372 2677 -637 1590 234 50 53 chr4 67810155 67810660 -116478002 - MLT1D LTR MaLR -2 503 1 214 428 44 11 chr4 67810794 67810974 -116477688 + L2 LINE L2 2866 3051 -221 938 301 94 16 chr4 67812385 67812811 -116475851 - L2 LINE L2 -862 2452 1994 266 337 12 0 chr4 67812991 67813077 -116475585 + MIR SINE MIR 30 116 -92 24 0 0 0 chr4 67813374 67813398 -116475264 + AT_rich Low_complexity Low_complexity 1 24 0 2164 106 0 0 chr4 67813407 67813689 -116474973 + AluSg SINE Alu 1 282 -28 288 0 0 0 chr4 67813689 67813721 -116474941 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 25 0 0 0 chr4 67814033 67814058 -116474604 + AT_rich Low_complexity Low_complexity 1 25 0 202 264 38 0 chr4 67815012 67815065 -116473597 + MIR3 SINE MIR 132 186 -22 1120 170 32 30 chr4 67815457 67815641 -116473021 + MER2 DNA MER2_type 1 235 -110 2216 93 3 3 chr4 67815641 67815932 -116472730 + AluSc SINE Alu 7 297 -12 1120 170 32 30 chr4 67815932 67816044 -116472618 + MER2 DNA MER2_type 235 345 0 247 247 37 0 chr4 67816215 67816296 -116472366 + (TATATG)n Simple_repeat Simple_repeat 4 87 0 22 0 0 0 chr4 67816963 67816985 -116471677 + AT_rich Low_complexity Low_complexity 1 22 0 236 264 0 0 chr4 67818218 67818271 -116470391 + MER103 DNA DNA 67 119 -47 480 269 148 11 chr4 67818421 67818603 -116470059 - MIR SINE MIR 0 262 56 257 399 22 0 chr4 67818773 67818911 -116469751 + MIR3 SINE MIR 66 206 -2 242 286 46 91 chr4 67819465 67819640 -116469022 - MIR SINE MIR -56 206 40 675 162 59 7 chr4 67819667 67819803 -116468859 - L1PA16 LINE L1 -9 6157 6015 2023 109 16 16 chr4 67820390 67820702 -116467960 - AluSx SINE Alu 0 312 1 2416 66 0 28 chr4 67820711 67821030 -116467632 - AluY SINE Alu -1 310 1 1356 143 34 13 chr4 67821307 67821545 -116467117 + L1PB4 LINE L1 5905 6147 -9 312 320 60 10 chr4 67822648 67822748 -116465914 + L2 LINE L2 3163 3267 -5 186 143 0 0 chr4 67822792 67822827 -116465835 + (GA)n Simple_repeat Simple_repeat 2 36 0 205 204 0 23 chr4 67824126 67824170 -116464492 + (TAG)n Simple_repeat Simple_repeat 1 43 0 574 256 44 39 chr4 67824732 67824760 -116463902 - MIR SINE MIR -12 250 224 1720 124 57 88 chr4 67824760 67825147 -116463515 + THE1C LTR MaLR 1 375 0 574 256 44 39 chr4 67825147 67825298 -116463364 - MIR SINE MIR -38 224 70 2508 47 0 34 chr4 67827096 67827418 -116461244 + AluY SINE Alu 1 311 0 710 232 32 0 chr4 67828178 67828333 -116460329 - FRAM SINE Alu -5 161 2 550 209 12 0 chr4 67828943 67828951 -116459711 + (TA)n Simple_repeat Simple_repeat 1 7 -167 207 0 0 0 chr4 67828951 67828974 -116459688 + (TG)n Simple_repeat Simple_repeat 2 24 0 550 209 12 0 chr4 67828974 67829137 -116459525 + (TA)n Simple_repeat Simple_repeat 7 174 0 1649 111 15 50 chr4 67829640 67829901 -116458761 + AluSc SINE Alu 30 281 -28 288 0 0 0 chr4 67829901 67829933 -116458729 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 25 0 0 0 chr4 67830245 67830270 -116458392 + AT_rich Low_complexity Low_complexity 1 25 0 202 264 38 0 chr4 67831224 67831277 -116457385 + MIR3 SINE MIR 132 186 -22 967 153 33 38 chr4 67831669 67831852 -116456810 + MER2 DNA MER2_type 1 182 -163 1595 129 7 19 chr4 67831853 67832124 -116456538 + AluSc SINE Alu 7 274 -35 710 232 32 0 chr4 67832805 67832960 -116455702 - FRAM SINE Alu -5 161 2 550 209 12 0 chr4 67833570 67833578 -116455084 + (TA)n Simple_repeat Simple_repeat 1 7 -167 207 0 0 0 chr4 67833578 67833601 -116455061 + (TG)n Simple_repeat Simple_repeat 2 24 0 550 209 12 0 chr4 67833601 67833764 -116454898 + (TA)n Simple_repeat Simple_repeat 7 174 0 1858 99 11 42 chr4 67834267 67834551 -116454111 + AluSc SINE Alu 30 304 -5 306 313 31 0 chr4 67835307 67835403 -116453259 - L2 LINE L2 -5 3308 3210 22 0 0 0 chr4 67836143 67836165 -116452497 + AT_rich Low_complexity Low_complexity 1 22 0 861 191 40 6 chr4 67836258 67836431 -116452231 + MER20 DNA MER1_type 41 219 0 324 127 0 0 chr4 67836669 67836724 -116451938 + (TC)n Simple_repeat Simple_repeat 1 55 0 21 0 0 0 chr4 67836761 67836782 -116451880 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr4 67836892 67836930 -116451732 + AT_rich Low_complexity Low_complexity 1 38 0 245 265 36 48 chr4 67837305 67837388 -116451274 + MIR SINE MIR 111 192 -70 233 230 44 46 chr4 67837456 67837563 -116451099 - MIR SINE MIR -56 152 98 1982 111 10 93 chr4 67837795 67838193 -116450469 + L1PB3 LINE L1 5783 6147 -7 342 280 75 70 chr4 67839256 67839456 -116449206 + MIR SINE MIR 56 256 -6 2593 36 3 0 chr4 67843561 67843865 -116444797 + AluY SINE Alu 1 305 -6 518 194 216 14 chr4 67843906 67844045 -116444617 + MIR SINE MIR 82 248 -14 306 0 0 0 chr4 67845158 67845192 -116443470 + (CA)n Simple_repeat Simple_repeat 1 34 0 23 33 0 0 chr4 67845854 67845884 -116442778 + AT_rich Low_complexity Low_complexity 1 30 0 2099 125 3 0 chr4 67845958 67846247 -116442415 - AluSq SINE Alu -23 290 1 1728 176 10 19 chr4 67846874 67847181 -116441481 + AluJb SINE Alu 1 304 -8 671 288 63 0 chr4 67847183 67847374 -116441288 - MIR SINE MIR -58 204 2 348 266 19 54 chr4 67848642 67848777 -116439885 - MER5B DNA MER1_type -3 175 55 407 337 1 43 chr4 67848823 67848961 -116439701 + MIR3 SINE MIR 36 169 -39 475 314 135 36 chr4 67851346 67851620 -116437042 + L2 LINE L2 3013 3313 0 25 0 0 0 chr4 67851658 67851683 -116436979 + AT_rich Low_complexity Low_complexity 1 25 0 2068 125 3 13 chr4 67851685 67851990 -116436672 + AluSp SINE Alu 1 302 -11 305 238 306 12 chr4 67852723 67852883 -116435779 + MIR SINE MIR 53 259 -3 1148 165 99 132 chr4 67853079 67853719 -116434943 + MER4C LTR ERV1 1 462 -3 21 0 0 0 chr4 67854898 67854919 -116433743 + AT_rich Low_complexity Low_complexity 1 21 0 332 351 117 1 chr4 67855903 67856115 -116432547 - MIR SINE MIR -13 249 18 210 311 28 57 chr4 67857262 67857368 -116431294 + L2 LINE L2 3168 3270 -2 840 276 71 0 chr4 67857423 67857648 -116431014 + MIR SINE MIR 19 259 -3 2827 32 3 0 chr4 67857837 67858178 -116430484 - L1PA2 LINE L1 -1 6154 5813 255 221 29 115 chr4 67858416 67858520 -116430142 - MIR SINE MIR -22 240 146 484 314 145 35 chr4 67858560 67858878 -116429784 + MLT1H LTR MaLR 83 435 -114 1736 238 29 32 chr4 67858890 67859483 -116429179 - L1MCa LINE L1 -3156 3408 2818 2984 234 39 29 chr4 67859518 67860572 -116428090 - L1MCa LINE L1 -4583 2162 896 439 313 0 31 chr4 67860619 67860779 -116427883 - L1MCa LINE L1 -5255 790 636 4350 162 43 41 chr4 67860783 67861418 -116427244 + MER4D LTR ERV1 4 636 -267 1776 234 54 15 chr4 67861418 67861828 -116426834 + MSTB LTR MaLR 1 426 0 8661 179 22 18 chr4 67861828 67862198 -116426464 + MSTA-int LTR MaLR 1 368 -1283 2112 123 10 3 chr4 67862198 67862498 -116426164 - AluSq SINE Alu -11 302 1 8661 179 22 18 chr4 67862498 67863770 -116424892 + MSTA-int LTR MaLR 368 1651 0 2055 192 49 5 chr4 67863770 67864176 -116424486 + MSTA LTR MaLR 1 424 -4 4350 162 43 41 chr4 67864176 67864434 -116424228 + MER4D LTR ERV1 635 901 -2 2012 256 40 20 chr4 67864450 67865055 -116423607 - L1MCa LINE L1 -5426 619 3 1358 60 0 0 chr4 67865084 67865251 -116423411 - L1PA7 LINE L1 -33 6121 5955 7139 80 0 10 chr4 67865251 67866823 -116421839 + L1PA7 LINE L1 4372 5926 -228 315 359 106 0 chr4 67867971 67868141 -116420521 + MIR SINE MIR 56 243 -19 180 158 0 0 chr4 67868167 67868205 -116420457 + (CA)n Simple_repeat Simple_repeat 2 39 0 1647 218 15 30 chr4 67869379 67869773 -116418889 + MLT1B LTR MaLR 3 390 0 1899 150 7 7 chr4 67869820 67870114 -116418548 - AluSx SINE Alu -18 294 1 21 0 0 0 chr4 67870455 67870476 -116418186 + AT_rich Low_complexity Low_complexity 1 21 0 275 333 23 6 chr4 67871096 67871270 -116417392 + L1MC/D LINE L1 5708 5884 -1924 8249 108 25 16 chr4 67871284 67872512 -116416150 + MER52-int LTR ERV1 5853 7091 0 863 214 50 96 chr4 67872517 67872840 -116415822 + MER52A LTR ERV1 663 970 -785 * 1010 266 17 99 chr4 67872825 67873239 -116415423 + MER52A LTR ERV1 1092 1471 -284 518 280 19 13 chr4 67873241 67873398 -116415264 + MER52A LTR ERV1 1598 1755 0 1775 194 7 0 chr4 67873663 67873956 -116414706 - AluSx SINE Alu -17 295 1 351 308 50 18 chr4 67874359 67874612 -116414050 + L1M4 LINE L1 5156 5420 -748 290 303 0 0 chr4 67874949 67875025 -116413637 + CT-rich Low_complexity Low_complexity 3 78 0 684 269 40 6 chr4 67875269 67875444 -116413218 - MIR SINE MIR -76 186 6 1947 143 140 11 chr4 67875851 67876230 -116412432 + MSTA LTR MaLR 1 428 0 3347 106 10 14 chr4 67876526 67877015 -116411647 - LTR15 LTR ERV1 -6 487 1 1325 191 8 23 chr4 67877018 67877274 -116411388 - AluJo SINE Alu -53 259 8 21 0 0 0 chr4 67877345 67877366 -116411296 + AT_rich Low_complexity Low_complexity 1 21 0 340 299 26 2 chr4 67877586 67877728 -116410934 - L1MEc LINE L1 -916 1660 1516 458 263 130 23 chr4 67877830 67878131 -116410531 - L1MEc LINE L1 -4892 1313 981 21 36 0 0 chr4 67879863 67879891 -116408771 + AT_rich Low_complexity Low_complexity 1 28 0 1682 192 0 7 chr4 67880213 67880510 -116408152 + AluJo SINE Alu 1 295 -17 218 227 0 0 chr4 67880546 67880590 -116408072 + (TA)n Simple_repeat Simple_repeat 2 45 0 22 0 0 0 chr4 67882048 67882070 -116406592 + AT_rich Low_complexity Low_complexity 1 22 0 579 298 45 65 chr4 67882827 67883119 -116405543 - MLT1K LTR MaLR -77 511 226 3081 146 26 0 chr4 67883147 67883646 -116405016 - MER41E LTR ERV1 0 512 1 482 284 106 39 chr4 67885378 67885586 -116403076 - MIR SINE MIR -1 261 40 453 320 0 20 chr4 67885704 67885851 -116402811 + MIR SINE MIR 15 158 -104 425 261 65 71 chr4 67885872 67886056 -116402606 - MIR SINE MIR -69 193 11 225 340 20 10 chr4 67886069 67886169 -116402493 + MIR SINE MIR 150 250 -12 237 303 40 40 chr4 67887209 67887308 -116401354 - MIR3 SINE MIR -29 179 81 2355 73 3 0 chr4 67887883 67888171 -116400491 + AluSc SINE Alu 1 289 -20 213 222 22 0 chr4 67888363 67888408 -116400254 + MIR SINE MIR 81 126 -82 1796 110 0 0 chr4 67888616 67888853 -116399809 + AluSc SINE Alu 73 309 0 24 53 0 0 chr4 67889244 67889282 -116399380 + AT_rich Low_complexity Low_complexity 1 38 0 21 71 0 0 chr4 67890582 67890624 -116398038 + AT_rich Low_complexity Low_complexity 1 42 0 21 71 0 0 chr4 67891196 67891238 -116397424 + AT_rich Low_complexity Low_complexity 1 42 0 2292 103 0 0 chr4 67891503 67891803 -116396859 - AluSq SINE Alu -13 300 1 213 259 17 0 chr4 67893403 67893461 -116395201 + (CATATA)n Simple_repeat Simple_repeat 1 59 0 184 244 85 49 chr4 67894256 67894338 -116394324 + MIR3 SINE MIR 103 187 -21 195 235 0 0 chr4 67894518 67894569 -116394093 + GA-rich Low_complexity Low_complexity 3 53 0 234 0 0 0 chr4 67894927 67894953 -116393709 + (CA)n Simple_repeat Simple_repeat 2 27 0 314 214 12 0 chr4 67895238 67895322 -116393340 + GA-rich Low_complexity Low_complexity 1 85 0 1017 251 75 51 chr4 67895652 67896155 -116392507 - MLT1G1 LTR MaLR -24 531 1 442 213 191 58 chr4 67896828 67897189 -116391473 - L1ME4a LINE L1 -24 6097 5689 275 345 122 13 chr4 67897192 67897430 -116391232 + L3 LINE CR1 410 673 -904 713 278 17 6 chr4 67897499 67897672 -116390990 + MLT1H LTR MaLR 180 354 -195 279 0 0 0 chr4 67898441 67898472 -116390190 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1218 234 88 81 chr4 67898742 67899186 -116389476 + MER70B LTR ERVL 4 450 -128 24 0 0 0 chr4 67899427 67899451 -116389211 + AT_rich Low_complexity Low_complexity 1 24 0 1043 182 71 100 chr4 67899880 67900231 -116388431 + MER110A LTR ERV1 1 341 -127 2097 105 8 11 chr4 67900231 67900746 -116387916 + L1PA8A LINE L1 5054 5569 -562 367 224 0 95 chr4 67900846 67900962 -116387700 + LTR16A1 LTR ERVL 351 455 -2 507 293 0 0 chr4 67901439 67901555 -116387107 - L2 LINE L2 -5 3267 3152 22 0 0 0 chr4 67901719 67901741 -116386921 + AT_rich Low_complexity Low_complexity 1 22 0 237 231 0 0 chr4 67901746 67901798 -116386864 + L2 LINE L2 3262 3313 0 21 0 0 0 chr4 67902050 67902071 -116386591 + AT_rich Low_complexity Low_complexity 1 21 0 221 195 271 51 chr4 67902379 67902497 -116386165 + MER5A DNA MER1_type 43 186 -3 * 448 235 31 0 chr4 67902405 67902503 -116386159 - MER5A DNA MER1_type -77 112 12 26 50 0 0 chr4 67902869 67902909 -116385753 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chr4 67903688 67903717 -116384945 + AT_rich Low_complexity Low_complexity 1 29 0 1635 168 47 32 chr4 67904014 67904353 -116384309 - MER2 DNA MER2_type 0 344 1 2355 100 0 0 chr4 67904513 67904822 -116383840 - AluSx SINE Alu -3 309 1 25 0 0 0 chr4 67905709 67905734 -116382928 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr4 67907070 67907101 -116381561 + AT_rich Low_complexity Low_complexity 1 31 0 183 129 0 0 chr4 67907229 67907260 -116381402 + (TAA)n Simple_repeat Simple_repeat 3 33 0 22 35 0 0 chr4 67907455 67907484 -116381178 + AT_rich Low_complexity Low_complexity 1 29 0 2090 98 0 0 chr4 67908014 67908289 -116380373 - AluY SINE Alu -11 300 26 180 242 0 0 chr4 67908435 67908468 -116380194 + MIR SINE MIR 217 249 -13 180 320 0 0 chr4 67908468 67908485 -116380177 + L2 LINE L2 3262 3311 -2 300 294 35 0 chr4 67908491 67908576 -116380086 - MIR SINE MIR -98 164 77 1524 146 122 0 chr4 67908594 67908880 -116379782 + AluJo SINE Alu 1 317 0 205 204 93 19 chr4 67909665 67909719 -116378943 - L2 LINE L2 -3 3310 3253 1703 170 4 0 chr4 67910173 67910449 -116378213 + AluJb SINE Alu 34 310 -2 298 301 88 36 chr4 67910568 67910761 -116377901 + L2 LINE L2 2218 2420 -894 1485 226 114 19 chr4 67911124 67911535 -116377127 + MER31B LTR ERV1 14 463 -3 24 77 0 0 chr4 67912677 67912729 -116375933 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr4 67912892 67912913 -116375749 + AT_rich Low_complexity Low_complexity 1 21 0 258 95 0 0 chr4 67913439 67913481 -116375181 + (CA)n Simple_repeat Simple_repeat 2 43 0 2038 194 39 27 chr4 67913853 67914266 -116374396 + MER47B DNA MER2_type 1 418 0 183 340 64 0 chr4 67914971 67915065 -116373597 + L2 LINE L2 2934 3033 -280 354 204 0 0 chr4 67915568 67915656 -116373006 + (CTA)n Simple_repeat Simple_repeat 3 90 0 26 0 0 0 chr4 67915707 67915733 -116372929 + AT_rich Low_complexity Low_complexity 1 26 0 257 162 4 43 chr4 67916003 67916074 -116372588 - MIR SINE MIR -64 144 94 467 303 28 21 chr4 67917926 67918071 -116370591 + L2 LINE L2 2932 3077 -195 244 270 161 15 chr4 67918421 67918558 -116370104 - MLT1H LTR MaLR -392 157 1 287 321 37 85 chr4 67918601 67918872 -116369790 + L2 LINE L2 2682 2939 -375 * 343 327 59 75 chr4 67918833 67919304 -116369358 - L2 LINE L2 -76 3196 2731 2207 74 3 7 chr4 67921573 67921869 -116366793 + L1PA7 LINE L1 5855 6149 -5 451 0 0 0 chr4 67922010 67922064 -116366598 + L1PA3 LINE L1 6099 6152 -3 306 313 31 0 chr4 67923276 67923372 -116365290 + L2 LINE L2 3214 3312 -1 2247 110 3 3 chr4 67923603 67923912 -116364750 + AluSc SINE Alu 1 309 0 189 0 0 0 chr4 67924256 67924277 -116364385 + (CA)n Simple_repeat Simple_repeat 2 22 0 634 270 35 11 chr4 67924336 67924510 -116364152 - MIR SINE MIR -65 197 20 1646 279 84 11 chr4 67925073 67925909 -116362753 + L2 LINE L2 2414 3312 -1 1883 164 68 3 chr4 67926632 67926998 -116361664 + MLT1B LTR MaLR 1 390 0 2147 122 0 0 chr4 67927106 67927394 -116361268 - AluSx SINE Alu -24 288 1 234 235 0 0 chr4 67928984 67929035 -116359627 + L3 LINE CR1 1492 1542 -35 1169 122 21 214 chr4 67929069 67929503 -116359159 - Tigger6 DNA MER2_type 0 1597 1248 5419 42 6 5 chr4 67929509 67930180 -116358482 - L1PA5 LINE L1 -6 6148 5477 1751 38 1 18 chr4 67930180 67930489 -116358173 + L1PA5 LINE L1 5159 5464 -690 1194 141 45 0 chr4 67930489 67930687 -116357975 - Tigger6 DNA MER2_type -332 1265 1059 4022 97 24 7 chr4 67931824 67932404 -116356258 + L1PA8 LINE L1 5581 6170 -2 249 270 27 0 chr4 67932404 67932478 -116356184 + MER110A LTR ERV1 332 407 -61 796 256 22 0 chr4 67932481 67932661 -116356001 + MER63A DNA MER1_type 27 210 0 338 313 27 0 chr4 67932661 67932773 -116355889 + MER110 LTR ERV1 377 491 0 909 132 0 22 chr4 67933194 67933330 -116355332 + AluSq/x SINE Alu 1 133 -180 349 298 73 54 chr4 67934604 67934919 -116353743 + MER110-int LTR ERV1 1702 2022 -4779 7981 45 0 2 chr4 67935414 67937169 -116351493 + L1PA5 LINE L1 4392 6146 -8 479 313 58 25 chr4 67937272 67937550 -116351112 + MER110-int LTR ERV1 211 497 -4150 27 62 0 0 chr4 67937749 67937797 -116350865 + AT_rich Low_complexity Low_complexity 1 48 0 313 303 38 54 chr4 67938756 67938941 -116349721 - MIR SINE MIR -45 217 36 1188 184 61 61 chr4 67939631 67939738 -116348924 + AluJo SINE Alu 20 126 -186 213 39 0 0 chr4 67939738 67939764 -116348898 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1188 184 61 61 chr4 67939764 67939949 -116348713 + AluJo SINE Alu 125 312 0 600 95 32 24 chr4 67939952 67940078 -116348584 + GA-rich Low_complexity Low_complexity 2 128 0 514 299 75 6 chr4 67941694 67941868 -116346794 + MIR SINE MIR 46 231 -31 566 305 50 56 chr4 67941923 67942264 -116346398 + MLT1H LTR MaLR 200 538 -11 1916 244 39 11 chr4 67942977 67943518 -116345144 - L1M4 LINE L1 -1832 4314 3759 3408 173 26 10 chr4 67943521 67944205 -116344457 + L1P LINE L1 4146 4840 -1306 246 156 0 0 chr4 67944214 67944259 -116344403 + (TA)n Simple_repeat Simple_repeat 2 46 0 378 222 56 0 chr4 67944279 67944369 -116344293 - L1MA10 LINE L1 -2 6332 6238 * 669 326 52 33 chr4 67944367 67945357 -116343305 - L1ME LINE L1 -402 6575 5538 712 199 92 56 chr4 67945377 67945573 -116343089 - MIR SINE MIR -1 261 59 228 315 41 0 chr4 67945636 67945709 -116342953 + MER94 DNA DNA 55 130 -4 320 314 57 25 chr4 67945916 67946269 -116342393 - L1ME LINE L1 -1701 5256 4893 25 31 0 0 chr4 67946314 67946346 -116342316 + AT_rich Low_complexity Low_complexity 1 32 0 1631 308 7 9 chr4 67946911 67947375 -116341287 + L1PA13 LINE L1 1 463 -6324 * 3656 250 55 46 chr4 67947367 67948487 -116340175 - L1ME LINE L1 -5719 1140 11 1031 223 62 5 chr4 67948704 67948928 -116339734 + MER8 DNA MER2_type 1 237 -2 228 35 0 0 chr4 67948928 67948957 -116339705 + (TG)n Simple_repeat Simple_repeat 2 30 0 2468 174 37 40 chr4 67948976 67949689 -116338973 - L1M2 LINE L1 -527 5785 5053 937 278 56 20 chr4 67949692 67950088 -116338574 - L1M4c LINE L1 -3626 3480 3071 * 2135 213 17 58 chr4 67950086 67950934 -116337728 + L1 LINE L1 4351 5135 -1011 1361 127 0 15 chr4 67950934 67951131 -116337531 + AluSx SINE Alu 1 194 -118 4119 138 14 25 chr4 67951131 67951864 -116336798 + L1PA16 LINE L1 5439 6163 -3 463 286 56 17 chr4 67951887 67952174 -116336488 - L1M4c LINE L1 -4062 3046 2749 2380 103 0 0 chr4 67952182 67952494 -116336168 - AluSq SINE Alu -1 312 1 320 231 0 2 chr4 67952652 67952725 -116335937 - L1M4c LINE L1 -4517 2510 2443 * 432 245 6 42 chr4 67952720 67952888 -116335774 - L1M4c LINE L1 -4516 2521 2378 1526 263 87 51 chr4 67952892 67953641 -116335021 - L1M4c LINE L1 -6254 776 1 471 294 33 11 chr4 67953733 67953913 -116334749 - HAL1 LINE L1 -803 1704 1521 28 48 0 0 chr4 67954012 67954054 -116334608 + AT_rich Low_complexity Low_complexity 1 42 0 363 299 131 67 chr4 67954066 67954440 -116334222 - L1MEd LINE L1 -4886 1233 836 629 287 5 41 chr4 67956387 67956582 -116332080 - L2 LINE L2 -9 3304 3117 348 215 0 0 chr4 67956668 67956733 -116331929 - Charlie1 DNA MER1_type -1 2760 2696 32853 31 2 0 chr4 67956733 67961465 -116327197 + L1PA3 LINE L1 1416 6154 -1 2222 166 157 51 chr4 67961517 67961724 -116326938 - Charlie1 DNA MER1_type -82 2679 2495 2399 81 0 3 chr4 67961724 67962034 -116326628 - AluY SINE Alu -2 309 1 2222 166 157 51 chr4 67962034 67962470 -116326192 - Charlie1 DNA MER1_type -266 2495 1968 25 51 0 0 chr4 67963359 67963398 -116325264 + AT_rich Low_complexity Low_complexity 1 39 0 446 333 35 12 chr4 67964309 67964480 -116324182 + MIR SINE MIR 18 192 -70 1788 153 133 29 chr4 67964769 67965195 -116323467 - L1MD1 LINE L1 -6 6236 5771 1636 148 72 4 chr4 67965270 67965547 -116323115 + AluJb SINE Alu 2 297 -15 262 158 0 35 chr4 67965953 67966010 -116322652 - L1MB8 LINE L1 -1 6177 6123 312 282 65 51 chr4 67966403 67966619 -116322043 - L1ME LINE L1 -281 5840 5622 6797 62 25 0 chr4 67967444 67968591 -116320071 - L1PA6 LINE L1 -1 6153 5000 1568 146 134 0 chr4 67969319 67969580 -116319082 - AluSx SINE Alu -6 296 1 194 328 103 17 chr4 67969609 67969725 -116318937 - L2 LINE L2 0 3272 3147 377 285 52 84 chr4 67971317 67971661 -116317001 + L2 LINE L2 2169 2501 -813 220 383 23 23 chr4 67971690 67971818 -116316844 + L2 LINE L2 2660 2787 -527 231 88 0 0 chr4 67972116 67972150 -116316512 + (CA)n Simple_repeat Simple_repeat 2 35 0 286 417 39 0 chr4 67972220 67972376 -116316286 + L2 LINE L2 3111 3272 0 271 223 24 13 chr4 67972383 67972480 -116316182 + L1M1 LINE L1 5673 5769 -401 199 263 44 34 chr4 67973476 67973576 -116315086 - MIR SINE MIR -50 158 87 440 280 125 29 chr4 67973975 67974350 -116314312 + L1ME4a LINE L1 5692 6102 -19 276 300 0 0 chr4 67974938 67975008 -116313654 - MIR SINE MIR -10 252 183 342 288 61 43 chr4 67975169 67975332 -116313330 - MIR SINE MIR -87 175 10 2461 96 0 0 chr4 67976328 67976640 -116312022 - AluSx SINE Alu 0 312 1 254 255 0 0 chr4 67976929 67976976 -116311686 - MIR SINE MIR -11 251 205 224 241 0 17 chr4 67978171 67978229 -116310433 + T-rich Low_complexity Low_complexity 3 59 0 606 251 81 120 chr4 67979071 67979492 -116309170 + L2 LINE L2 2614 3016 -297 441 324 70 0 chr4 67979537 67979722 -116308940 - LTR33 LTR ERVL -64 457 260 347 322 84 30 chr4 67979754 67979956 -116308706 - LTR33 LTR ERVL -308 213 1 786 298 110 4 chr4 67979956 67980228 -116308434 + L2 LINE L2 3011 3311 -2 200 292 112 11 chr4 67980826 67980915 -116307747 - L3 LINE CR1 -103 1474 1377 515 358 57 24 chr4 67980943 67981239 -116307423 - L3 LINE CR1 -325 1252 947 257 330 74 59 chr4 67982039 67982242 -116306420 - L2 LINE L2 -176 3096 2891 293 285 0 66 chr4 67982996 67983147 -116305515 + L1MC3 LINE L1 6017 6157 -1628 29 28 0 0 chr4 67983281 67983317 -116305345 + AT_rich Low_complexity Low_complexity 1 36 0 4754 115 14 16 chr4 67983317 67983682 -116304980 - L1PA13 LINE L1 -2 6161 5797 230 54 0 27 chr4 67983682 67983719 -116304943 + (TG)n Simple_repeat Simple_repeat 2 37 0 4754 115 14 16 chr4 67983719 67984084 -116304578 - L1PA13 LINE L1 -366 5797 5433 397 304 121 26 chr4 67984104 67984354 -116304308 + HAL1b LINE L1 483 784 -564 1711 177 78 21 chr4 67984354 67984727 -116303935 + MSTD LTR MaLR 2 395 -1 397 304 121 26 chr4 67984727 67984864 -116303798 + HAL1b LINE L1 784 907 -441 34 55 0 0 chr4 67984896 67984951 -116303711 + AT_rich Low_complexity Low_complexity 1 55 0 497 293 98 73 chr4 67985634 67986184 -116302478 + L1M4 LINE L1 2636 3199 -2947 277 306 68 16 chr4 67986250 67986560 -116302102 + L1M4 LINE L1 4381 4706 -1440 258 359 84 0 chr4 67986574 67986705 -116301957 + L2 LINE L2 2392 2533 -781 1221 135 126 108 chr4 67987719 67988052 -116300610 + MER2 DNA MER2_type 1 339 -6 414 298 43 14 chr4 67989147 67989288 -116299374 - L3 LINE CR1 -180 1397 1253 1134 280 187 23 chr4 67989668 67990457 -116298205 - L2 LINE L2 -239 3074 2156 539 261 28 51 chr4 67990492 67990668 -116297994 - MER5B DNA MER1_type -6 172 1 30380 117 11 58 chr4 67991301 67997740 -116290922 + L1PA7 LINE L1 12 6134 -20 2498 119 11 0 chr4 67997742 67998120 -116290542 + MER61B-int LTR ERV1 4836 5217 0 1334 214 58 12 chr4 67998120 67998438 -116290224 + MER61B LTR ERV1 1 425 0 183 303 101 37 chr4 67999420 67999529 -116289133 + L2 LINE L2 3193 3308 -5 1604 185 10 7 chr4 67999769 68000061 -116288601 + AluJo SINE Alu 1 293 -19 2676 135 35 69 chr4 68000321 68000944 -116287718 + LTR38B LTR ERV1 1 602 -8 684 246 114 14 chr4 68002633 68002853 -116285809 - MIR SINE MIR -7 255 14 296 328 56 14 chr4 68002863 68002994 -116285668 + MIR SINE MIR 61 192 -63 2300 158 46 2 chr4 68003170 68003580 -116285082 + MSTA LTR MaLR 1 428 0 221 245 0 20 chr4 68004076 68004125 -116284537 + (TG)n Simple_repeat Simple_repeat 1 48 0 3202 114 20 22 chr4 68004508 68005001 -116283661 + LTR22B LTR ERVK 1 492 0 247 309 85 11 chr4 68005167 68005261 -116283401 + MIR3 SINE MIR 72 172 -36 240 280 140 11 chr4 68006215 68006308 -116282354 + MIR3 SINE MIR 104 208 0 1655 89 0 9 chr4 68006636 68006876 -116281786 - AluY SINE Alu 0 311 82 23 68 0 0 chr4 68007197 68007241 -116281421 + AT_rich Low_complexity Low_complexity 1 44 0 243 0 0 0 chr4 68007316 68007343 -116281319 + (TTA)n Simple_repeat Simple_repeat 2 28 0 22 70 0 0 chr4 68009398 68009441 -116279221 + AT_rich Low_complexity Low_complexity 1 43 0 2153 118 3 0 chr4 68010031 68010328 -116278334 - AluSg SINE Alu -12 298 1 593 83 42 21 chr4 68010956 68011052 -116277610 + MER4A LTR ERV1 1 98 -566 1578 150 47 31 chr4 68011052 68011392 -116277270 + MER4A LTR ERV1 261 664 0 1204 291 85 36 chr4 68011392 68011993 -116276669 + L2 LINE L2 2413 3038 -275 2220 168 12 5 chr4 68011993 68012393 -116276269 - MER57A LTR ERV1 0 403 1 1204 291 85 36 chr4 68012393 68012427 -116276235 + L2 LINE L2 3038 3069 -244 1104 300 75 32 chr4 68012434 68012904 -116275758 + L1ME2 LINE L1 6 495 -5575 3695 243 55 33 chr4 68012928 68014304 -116274358 + L1ME2 LINE L1 3920 5325 -755 644 226 20 67 chr4 68014297 68014492 -116274170 + L1ME2 LINE L1 5894 6079 -19 * 418 277 51 51 chr4 68014524 68014719 -116273943 + L1MC4 LINE L1 7830 8024 -18 598 220 87 66 chr4 68014752 68014993 -116273669 + L2 LINE L2 3065 3310 -3 234 175 0 0 chr4 68014994 68015034 -116273628 - MIR SINE MIR -107 155 116 1968 128 0 31 chr4 68015138 68015458 -116273204 + AluSg SINE Alu 1 310 0 373 272 15 81 chr4 68015707 68015781 -116272881 - L2 LINE L2 0 3313 3250 1917 137 0 48 chr4 68015781 68016096 -116272566 + AluSx SINE Alu 3 302 -10 373 272 15 81 chr4 68016096 68016157 -116272505 - L2 LINE L2 -63 3250 3187 26 0 0 0 chr4 68016585 68016611 -116272051 + AT_rich Low_complexity Low_complexity 1 26 0 231 114 0 0 chr4 68017484 68017519 -116271143 + (A)n Simple_repeat Simple_repeat 1 35 0 338 196 31 21 chr4 68018074 68018171 -116270491 - L1MA10 LINE L1 -1 6333 6236 239 289 0 0 chr4 68018173 68018263 -116270399 - L1MC4 LINE L1 -1339 6703 6614 240 143 0 0 chr4 68018265 68018307 -116270355 + (CATATA)n Simple_repeat Simple_repeat 6 47 0 2793 221 17 60 chr4 68018307 68018442 -116270220 - L1ME1 LINE L1 -76 6370 6231 1448 251 27 8 chr4 68018442 68018809 -116269853 + MLT1A2 LTR MaLR 1 374 0 2793 221 17 60 chr4 68018809 68019159 -116269503 - L1ME1 LINE L1 -215 6231 5867 315 0 0 0 chr4 68019159 68019194 -116269468 + (TG)n Simple_repeat Simple_repeat 2 36 0 2793 221 17 60 chr4 68019194 68019223 -116269439 - L1ME1 LINE L1 -579 5867 5838 342 0 0 0 chr4 68019223 68019261 -116269401 + (TG)n Simple_repeat Simple_repeat 2 39 0 2793 221 17 60 chr4 68019261 68019555 -116269107 - L1ME1 LINE L1 -608 5838 5595 1053 220 53 3 chr4 68019586 68019868 -116268794 - L1MCa LINE L1 -5097 1329 1034 2299 230 57 37 chr4 68019874 68020600 -116268062 - L1ME1 LINE L1 -1197 5229 4490 17073 93 6 29 chr4 68020857 68022553 -116266109 - Charlie3 DNA MER1_type -242 2464 839 2509 59 0 0 chr4 68022553 68022857 -116265805 - AluY SINE Alu -7 304 1 17073 93 6 29 chr4 68022857 68023577 -116265085 - Charlie3 DNA MER1_type -1867 839 104 180 0 0 0 chr4 68023996 68024016 -116264646 + (T)n Simple_repeat Simple_repeat 1 20 0 5467 252 67 34 chr4 68024060 68025280 -116263382 - L1ME1 LINE L1 -1989 4437 3259 2290 99 0 10 chr4 68025280 68025592 -116263070 - AluY SINE Alu -2 309 1 5467 252 67 34 chr4 68025592 68026806 -116261856 - L1ME1 LINE L1 -3167 3259 1734 1774 144 44 0 chr4 68026806 68027076 -116261586 - AluSx SINE Alu -28 284 3 5467 252 67 34 chr4 68027076 68027473 -116261189 - L1ME1 LINE L1 -4692 1734 1352 256 322 33 46 chr4 68027610 68027762 -116260900 - MLT1J1 LTR MaLR -230 216 67 221 361 17 34 chr4 68027853 68027972 -116260690 - L2 LINE L2 -251 3062 2946 433 273 67 18 chr4 68028963 68029128 -116259534 + MIR SINE MIR 64 236 -26 21 0 0 0 chr4 68029519 68029540 -116259122 + AT_rich Low_complexity Low_complexity 1 21 0 240 260 0 0 chr4 68029862 68029912 -116258750 + L1MC2 LINE L1 6254 6303 -41 23 33 0 0 chr4 68030033 68030063 -116258599 + AT_rich Low_complexity Low_complexity 1 30 0 775 269 64 26 chr4 68031236 68031470 -116257192 + MIR SINE MIR 1 243 -19 791 269 23 55 chr4 68031508 68031764 -116256898 + MIR SINE MIR 7 254 -8 4308 152 46 18 chr4 68032109 68033015 -116255647 - L1MA8 LINE L1 -5 6295 5328 1907 180 65 12 chr4 68033674 68034196 -116254466 + Tigger6b DNA MER2_type 4 584 -1013 * 2987 193 17 41 chr4 68034182 68034846 -116253816 + Tigger6b DNA MER2_type 950 1597 0 1845 199 11 8 chr4 68036173 68036535 -116252127 + MLT1A1 LTR MaLR 1 363 -2 256 210 25 0 chr4 68036571 68036652 -116252010 + (TA)n Simple_repeat Simple_repeat 1 83 0 221 276 17 0 chr4 68037381 68037439 -116251223 + GA-rich Low_complexity Low_complexity 3 61 0 419 283 68 57 chr4 68037699 68037876 -116250786 + MER5A DNA MER1_type 10 188 -1 620 231 26 0 chr4 68038088 68038109 -116250553 - L1MA10 LINE L1 0 6334 6314 2160 236 35 66 chr4 68038109 68038649 -116250013 - L1ME1 LINE L1 -13 6149 5594 1815 159 14 0 chr4 68038649 68038939 -116249723 - AluSx SINE Alu -18 294 1 2160 236 35 66 chr4 68038939 68039321 -116249341 - L1ME1 LINE L1 -568 5594 5270 3397 51 0 2 chr4 68039321 68039752 -116248910 - L1PA4 LINE L1 -3 6152 5723 2160 236 35 66 chr4 68039752 68040028 -116248634 - L1ME1 LINE L1 -892 5270 4987 1788 230 65 15 chr4 68040015 68040550 -116248112 - L1ME1 LINE L1 -2169 3977 3416 * 277 320 102 0 chr4 68041636 68041764 -116246898 + L2 LINE L2 2606 2746 -568 1614 282 96 26 chr4 68041778 68042619 -116246043 - L2 LINE L2 -1 3312 2403 188 317 158 0 chr4 68042695 68042796 -116245866 + L2 LINE L2 2860 2976 -337 2067 267 118 23 chr4 68042995 68043822 -116244840 - L1M3e LINE L1 -4997 2033 1128 406 211 89 63 chr4 68043863 68044053 -116244609 - MER114 LTR ERV -9 639 445 * 564 227 181 43 chr4 68044050 68044345 -116244317 + MLT1C LTR MaLR 155 467 0 924 254 71 37 chr4 68044345 68044754 -116243908 - MER114 LTR ERV -207 441 19 21 0 0 0 chr4 68044777 68044798 -116243864 + AT_rich Low_complexity Low_complexity 1 21 0 2240 98 3 0 chr4 68044805 68045100 -116243562 + AluSg SINE Alu 1 296 -14 21 0 0 0 chr4 68045225 68045246 -116243416 + AT_rich Low_complexity Low_complexity 1 21 0 295 291 20 64 chr4 68045661 68045817 -116242845 + MIR SINE MIR 2 148 -63 2411 80 0 3 chr4 68046285 68046597 -116242065 + AluY SINE Alu 1 311 0 1334 205 196 14 chr4 68047059 68047473 -116241189 - Charlie4a DNA MER1_type -18 490 2 623 304 35 26 chr4 68047620 68047850 -116240812 + MIR SINE MIR 21 252 -10 180 0 0 0 chr4 68047935 68047955 -116240707 + (A)n Simple_repeat Simple_repeat 1 20 0 22 70 0 0 chr4 68050584 68050627 -116238035 + AT_rich Low_complexity Low_complexity 1 43 0 339 284 134 78 chr4 68051983 68052467 -116236195 + L1MB2 LINE L1 522 1407 -5442 1092 182 68 0 chr4 68053086 68053322 -116235340 + LTR65 LTR ERV1 43 294 -375 4427 175 62 12 chr4 68053322 68054374 -116234288 + L1MC3 LINE L1 5040 5403 -743 7825 177 54 3 chr4 68055159 68056710 -116231952 + L1MC3 LINE L1 6156 7785 0 24 0 0 0 chr4 68056809 68056833 -116231829 + AT_rich Low_complexity Low_complexity 1 24 0 2054 90 4 0 chr4 68057666 68057943 -116230719 + L1PA8 LINE L1 5887 6164 -8 24 0 0 0 chr4 68058061 68058085 -116230577 + AT_rich Low_complexity Low_complexity 1 24 0 234 234 47 0 chr4 68058475 68058539 -116230123 + L1MB2 LINE L1 4614 4680 -2168 422 279 192 27 chr4 68058785 68059004 -116229658 - MIR SINE MIR 0 262 8 239 228 0 0 chr4 68059665 68059722 -116228940 - L1MC4 LINE L1 -1340 6702 6646 1542 232 23 72 chr4 68059838 68059905 -116228757 - MLT1D LTR MaLR 0 505 436 2226 104 3 3 chr4 68059905 68060212 -116228450 + AluSp SINE Alu 1 307 -6 1542 232 23 72 chr4 68060212 68060675 -116227987 - MLT1D LTR MaLR -69 436 1 257 268 116 84 chr4 68060988 68061118 -116227544 - L1ME LINE L1 -282 5882 5758 1121 300 71 36 chr4 68061118 68061622 -116227040 - LTR33A LTR ERVL 0 523 2 257 268 116 84 chr4 68061622 68061775 -116226887 - L1ME LINE L1 -406 5758 5590 1378 179 98 0 chr4 68061816 68062051 -116226611 + AluJb SINE Alu 23 280 -32 477 50 0 0 chr4 68062051 68062111 -116226551 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 1097 185 134 16 chr4 68062142 68062753 -116225909 + L1MB2 LINE L1 5369 6196 -689 207 0 0 0 chr4 68062753 68062776 -116225886 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1097 185 134 16 chr4 68062776 68062811 -116225851 + L1MB2 LINE L1 6196 6226 -659 * 2943 166 55 31 chr4 68062804 68063384 -116225278 + L1M3f LINE L1 275 868 -4460 1681 161 53 0 chr4 68063386 68063852 -116224810 + L1M3f LINE L1 963 1263 -4065 989 196 64 11 chr4 68063848 68064114 -116224548 + L1MB2 LINE L1 6594 6873 0 * 22 35 0 0 chr4 68064114 68064143 -116224519 + AT_rich Low_complexity Low_complexity 1 29 0 393 284 92 22 chr4 68064237 68064427 -116224235 - L1ME LINE L1 -650 5512 5302 1990 157 99 15 chr4 68064427 68064822 -116223840 - MSTA LTR MaLR 0 428 1 393 284 92 22 chr4 68064822 68064860 -116223802 - L1ME LINE L1 -860 5302 5268 1107 172 158 56 chr4 68064970 68065273 -116223389 + MER2 DNA MER2_type 2 335 -10 333 344 70 26 chr4 68065304 68065534 -116223128 - L1ME LINE L1 -989 5157 4918 668 265 91 53 chr4 68065635 68065971 -116222691 + L1MEc LINE L1 1087 1443 -4953 2105 120 7 0 chr4 68065971 68066289 -116222373 - AluSx SINE Alu 0 320 1 668 265 91 53 chr4 68066289 68066347 -116222315 + L1MEc LINE L1 1443 1497 -4899 1493 234 28 11 chr4 68067850 68068209 -116220453 - MLT1A1 LTR MaLR 0 365 1 340 318 9 27 chr4 68068750 68068860 -116219802 - MIR SINE MIR -112 150 43 242 358 78 22 chr4 68068877 68069056 -116219606 - L2 LINE L2 -638 2676 2488 2256 126 30 8 chr4 68069498 68069863 -116218799 + THE1C LTR MaLR 1 373 -2 26 64 0 0 chr4 68069945 68069992 -116218670 + AT_rich Low_complexity Low_complexity 1 47 0 22 56 0 0 chr4 68070015 68070051 -116218611 + AT_rich Low_complexity Low_complexity 1 36 0 642 296 17 47 chr4 68070053 68070126 -116218536 - MIR SINE MIR 0 262 188 1540 187 53 17 chr4 68070126 68070426 -116218236 - AluJo SINE Alu -1 311 1 642 296 17 47 chr4 68070426 68070585 -116218077 - MIR SINE MIR -74 188 37 282 242 0 10 chr4 68070629 68070728 -116217934 + L1MEc LINE L1 2966 3063 -3152 * 4317 186 44 7 chr4 68070727 68071384 -116217278 + L1MA4 LINE L1 93 787 -4541 5252 120 5 6 chr4 68071384 68072165 -116216497 + LTR17 LTR ERV1 1 780 0 4317 186 44 7 chr4 68072165 68072325 -116216337 + L1MA4 LINE L1 787 940 -4388 33 80 0 0 chr4 68072349 68072424 -116216238 + AT_rich Low_complexity Low_complexity 1 75 0 25 0 0 0 chr4 68072450 68072475 -116216187 + AT_rich Low_complexity Low_complexity 1 25 0 9794 182 34 14 chr4 68072479 68075210 -116213452 - L1MA4 LINE L1 -278 6204 3416 5629 213 62 2 chr4 68075213 68076661 -116212001 - L1MA4 LINE L1 -4065 1263 6 2164 251 28 8 chr4 68076665 68077319 -116211343 + L1MA4 LINE L1 925 1591 -4737 2291 197 36 62 chr4 68077331 68077711 -116210951 + L1MA4 LINE L1 1671 2022 -4306 18561 104 6 4 chr4 68077711 68081266 -116207396 - L1PA7 LINE L1 0 6154 2590 2291 197 36 62 chr4 68081266 68081655 -116207007 + L1MA4 LINE L1 2022 2420 -3908 5562 163 41 5 chr4 68081659 68083255 -116205407 + L1MA4 LINE L1 4750 6417 -65 2128 132 44 11 chr4 68083255 68083618 -116205044 - THE1C LTR MaLR 0 375 1 5562 163 41 5 chr4 68083618 68083679 -116204983 + L1MA4 LINE L1 6417 6474 -8 671 195 136 0 chr4 68083679 68083833 -116204829 + MER6 DNA MER2_type 384 558 -307 1631 153 41 0 chr4 68084035 68084330 -116204332 + MER6 DNA MER2_type 557 863 -2 354 295 57 19 chr4 68084348 68084453 -116204209 - LTR16C LTR ERVL -284 207 99 200 231 26 0 chr4 68085519 68085558 -116203104 + L2 LINE L2 3185 3224 -48 49 43 0 0 chr4 68085950 68086020 -116202642 + AT_rich Low_complexity Low_complexity 1 70 0 24 53 0 0 chr4 68086413 68086451 -116202211 + AT_rich Low_complexity Low_complexity 1 38 0 734 157 0 15 chr4 68086576 68086710 -116201952 - ORSL DNA AcHobo -1 274 143 1020 200 19 86 chr4 68087459 68087900 -116200762 - L1MC4 LINE L1 -4 7832 7419 1894 137 148 8 chr4 68087911 68088268 -116200394 + MSTA LTR MaLR 1 407 -21 1278 129 0 5 chr4 68088389 68088575 -116200087 - MLT1B LTR MaLR 0 390 206 988 150 56 6 chr4 68088575 68088755 -116199907 - Charlie3 DNA MER1_type -8 2702 2514 248 180 16 0 chr4 68088761 68088822 -116199840 + (TA)n Simple_repeat Simple_repeat 1 62 0 187 51 0 51 chr4 68088822 68088861 -116199801 + (TTAA)n Simple_repeat Simple_repeat 2 38 0 13251 100 6 4 chr4 68088861 68090659 -116198003 - Charlie3 DNA MER1_type -149 2561 762 667 99 18 18 chr4 68090661 68090772 -116197890 - AluY SINE Alu -14 297 187 1754 45 0 0 chr4 68090873 68091075 -116197587 - AluY SINE Alu -109 202 1 5398 90 5 71 chr4 68091076 68091898 -116196764 - Charlie3 DNA MER1_type -1942 768 1 983 181 50 41 chr4 68091898 68092113 -116196549 - MLT1B LTR MaLR -173 217 1 285 309 36 0 chr4 68092462 68092546 -116196116 - L2 LINE L2 0 3313 3227 2562 229 63 48 chr4 68093988 68094787 -116193875 + MER69B DNA AcHobo 33 843 -383 430 234 72 0 chr4 68095627 68095738 -116192924 + MIR SINE MIR 106 224 -38 225 291 79 25 chr4 68095899 68096013 -116192649 - MIR SINE MIR -93 115 7 533 206 10 0 chr4 68096290 68096392 -116192270 + L2 LINE L2 3185 3287 -26 2327 150 33 10 chr4 68096903 68097297 -116191365 - MSTB LTR MaLR -23 403 1 1017 246 195 112 chr4 68097837 68098846 -116189816 - MER52A LTR ERV1 0 1755 663 498 289 133 47 chr4 68098990 68099246 -116189416 - MER110 LTR ERV1 0 491 214 195 309 0 18 chr4 68099471 68099526 -116189136 + L2 LINE L2 3243 3296 -17 347 280 212 0 chr4 68099633 68099751 -116188911 + MIR3 SINE MIR 35 177 -31 234 0 0 0 chr4 68100060 68100086 -116188576 + (TAA)n Simple_repeat Simple_repeat 2 27 0 380 282 122 17 chr4 68100328 68100509 -116188153 + MER63A DNA MER1_type 3 202 -8 1656 224 79 31 chr4 68102319 68102460 -116186202 - Zaphod DNA AcHobo -5 4026 3893 1382 213 47 24 chr4 68102460 68102798 -116185864 + MER7A DNA MER2_type 1 344 -2 1656 224 79 31 chr4 68102798 68103262 -116185400 - Zaphod DNA AcHobo -138 3893 3392 420 262 9 116 chr4 68103562 68103795 -116184867 - Zaphod DNA AcHobo -3823 208 1 234 345 65 14 chr4 68103954 68104093 -116184569 + L2 LINE L2 3108 3253 -19 33 66 0 0 chr4 68105236 68105297 -116183365 + AT_rich Low_complexity Low_complexity 1 61 0 417 259 0 42 chr4 68105382 68105525 -116183137 + L1MEc LINE L1 589 725 -5671 225 154 0 0 chr4 68105742 68105781 -116182881 + (CA)n Simple_repeat Simple_repeat 2 40 0 209 133 33 33 chr4 68105830 68105890 -116182772 + (TTA)n Simple_repeat Simple_repeat 2 61 0 202 185 19 19 chr4 68106619 68106656 -116182006 + (TA)n Simple_repeat Simple_repeat 1 40 -14 2084 101 0 21 chr4 68106656 68106943 -116181719 - AluSc SINE Alu -23 286 6 202 185 19 19 chr4 68106943 68106959 -116181703 + (TA)n Simple_repeat Simple_repeat 39 54 0 804 182 0 0 chr4 68107179 68107311 -116181351 - FLAM_C SINE Alu -1 132 1 185 316 53 21 chr4 68107676 68107771 -116180891 + MIR SINE MIR 111 208 -54 1581 212 24 45 chr4 68109392 68109774 -116178888 - MLT1A2 LTR MaLR 0 374 1 448 269 123 27 chr4 68109809 68110030 -116178632 - MIR SINE MIR -5 257 12 414 0 0 0 chr4 68110749 68110795 -116177867 + (CA)n Simple_repeat Simple_repeat 2 47 0 384 296 83 35 chr4 68112357 68112526 -116176136 + MIR SINE MIR 16 192 -70 255 61 0 0 chr4 68112968 68113001 -116175661 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 27 0 0 0 chr4 68113519 68113546 -116175116 + AT_rich Low_complexity Low_complexity 1 27 0 3652 91 9 14 chr4 68113855 68114405 -116174257 + MER41B LTR ERV1 1 547 -88 2420 70 3 7 chr4 68115249 68115549 -116173113 + AluY SINE Alu 1 299 -12 469 266 95 24 chr4 68115777 68115946 -116172716 + MIR SINE MIR 10 190 -72 589 179 9 0 chr4 68116256 68116368 -116172294 - MER41A LTR ERV1 0 554 442 3317 156 50 0 chr4 68116368 68116964 -116171698 - MER41C-int LTR ERV1 -7130 626 1 3124 159 30 6 chr4 68116964 68117505 -116171157 - MER41C LTR ERV1 0 554 1 30783 137 22 35 chr4 68117505 68118002 -116170660 - MER41C-int LTR ERV1 0 7756 7254 2184 118 7 0 chr4 68118002 68118307 -116170355 - AluSp SINE Alu -6 307 1 30783 137 22 35 chr4 68118307 68120306 -116168356 - MER41C-int LTR ERV1 -502 7254 5231 2279 108 3 0 chr4 68120306 68120603 -116168059 + AluSp SINE Alu 1 298 -15 30783 137 22 35 chr4 68120603 68123170 -116165492 - MER41C-int LTR ERV1 -2525 5231 2766 2318 116 7 0 chr4 68123170 68123480 -116165182 - AluSx SINE Alu 0 312 1 30783 137 22 35 chr4 68123480 68123906 -116164756 - MER41C-int LTR ERV1 -4990 2766 2336 189 74 0 0 chr4 68124747 68124774 -116163888 + (TG)n Simple_repeat Simple_repeat 2 28 0 21 57 0 0 chr4 68124994 68125029 -116163633 + AT_rich Low_complexity Low_complexity 1 35 0 7613 188 76 56 chr4 68125040 68127335 -116161327 - MER41C-int LTR ERV1 -5414 2342 1 2894 151 61 2 chr4 68127335 68127858 -116160804 - MER41C LTR ERV1 0 554 1 28 0 0 26 chr4 68128402 68128424 -116160238 + AT_rich Low_complexity Low_complexity 1 23 -15 203 86 0 29 chr4 68128424 68128459 -116160203 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 28 0 0 26 chr4 68128459 68128475 -116160187 + AT_rich Low_complexity Low_complexity 23 38 0 710 309 110 29 chr4 68128475 68129377 -116159285 - L1MEc LINE L1 -5388 1008 34 551 307 53 13 chr4 68129378 68129606 -116159056 + LTR16C LTR ERVL 255 491 0 27 0 0 0 chr4 68129653 68129680 -116158982 + AT_rich Low_complexity Low_complexity 1 27 0 4148 50 13 6 chr4 68129680 68130205 -116158457 - L1PA7 LINE L1 -11 6143 5615 336 261 54 36 chr4 68130808 68130919 -116157743 - MIR SINE MIR -56 152 40 2112 147 113 10 chr4 68131148 68131536 -116157126 + MSTA LTR MaLR 1 428 0 631 244 146 73 chr4 68131559 68132023 -116156639 - MLT1H LTR MaLR -2 547 7 189 250 66 13 chr4 68132546 68132622 -116156040 + L2 LINE L2 3017 3096 -176 1538 199 17 61 chr4 68132874 68133282 -116155380 + MLT1B LTR MaLR 1 390 0 2303 93 0 3 chr4 68134276 68134576 -116154086 + AluSq SINE Alu 1 299 -14 2345 102 0 0 chr4 68134609 68134922 -116153740 + AluSq SINE Alu 1 313 0 192 286 0 0 chr4 68135185 68135227 -116153435 + L2 LINE L2 3221 3262 -10 333 0 0 0 chr4 68135710 68135747 -116152915 + (A)n Simple_repeat Simple_repeat 1 37 0 1767 226 119 93 chr4 68136011 68136648 -116152014 - MLT1E2 LTR MaLR 0 626 1 1900 203 13 13 chr4 68136779 68137169 -116151493 + MLT1B LTR MaLR 1 390 0 439 255 60 51 chr4 68137286 68137521 -116151141 - L1ME3A LINE L1 -223 5947 5711 509 320 65 28 chr4 68137562 68138782 -116149880 - L1ME3A LINE L1 -529 5641 4378 23 0 0 0 chr4 68139076 68139099 -116149563 + AT_rich Low_complexity Low_complexity 1 23 0 12777 179 49 60 chr4 68139197 68140515 -116148147 + MER41B-int LTR ERV1 1942 3273 -2673 3716 100 2 4 chr4 68140515 68141027 -116147635 + MER9 LTR ERVK 1 511 0 12777 179 49 60 chr4 68141027 68143323 -116145339 + MER41B-int LTR ERV1 3273 5418 -528 398 253 41 27 chr4 68143772 68143918 -116144744 + MER41B-int LTR ERV1 6526 6673 -3 2215 166 79 32 chr4 68143918 68144422 -116144240 + MER41B LTR ERV1 111 466 -12 715 234 66 0 chr4 68144964 68145131 -116143531 + MER5A DNA MER1_type 11 188 -1 2277 118 115 21 chr4 68145199 68145624 -116143038 - MER4C LTR ERV1 0 465 1 7346 174 54 38 chr4 68145626 68147450 -116141212 - MER4C-int LTR ERV1 0 6598 4747 245 306 63 45 chr4 68148367 68148478 -116140184 - MIR SINE MIR -56 152 40 724 244 110 82 chr4 68148822 68149274 -116139388 - MLT1H LTR MaLR -33 516 9 23 33 0 0 chr4 68149440 68149470 -116139192 + AT_rich Low_complexity Low_complexity 1 30 0 303 335 53 98 chr4 68149813 68150058 -116138604 + L2 LINE L2 3016 3249 -23 1428 198 35 77 chr4 68150153 68150557 -116138105 + MLT1B LTR MaLR 1 387 -3 238 283 13 18 chr4 68152056 68152150 -116136512 + GA-rich Low_complexity Low_complexity 3 161 0 246 270 0 34 chr4 68152153 68152242 -116136420 + T-rich Low_complexity Low_complexity 1 86 0 235 204 0 0 chr4 68152320 68152374 -116136288 + MLT1G3 LTR MaLR 249 302 -228 253 191 0 0 chr4 68153695 68153742 -116134920 + L2 LINE L2 3266 3312 -1 2029 179 91 46 chr4 68154516 68155013 -116133649 - LTR44 LTR ERV1 0 519 1 21 0 0 0 chr4 68155144 68155165 -116133497 + AT_rich Low_complexity Low_complexity 1 21 0 308 308 50 17 chr4 68156005 68156125 -116132537 - MIR SINE MIR -20 242 119 183 261 0 0 chr4 68156941 68156987 -116131675 + MIR SINE MIR 216 261 -1 648 227 30 0 chr4 68157873 68158005 -116130657 - Tigger3(Golem) DNA MER2_type -6 3023 2888 5633 220 24 3 chr4 68158006 68159619 -116129043 + L1MA4A LINE L1 1455 3102 -3746 7268 44 0 4 chr4 68159895 68160877 -116127785 - L1PA6 LINE L1 0 6154 5179 12282 194 40 16 chr4 68160878 68163992 -116124670 + L1MA4A LINE L1 3086 6322 -683 2272 92 0 0 chr4 68163992 68164286 -116124376 - AluY SINE Alu -17 294 1 12282 194 40 16 chr4 68164286 68164963 -116123699 + L1MA4A LINE L1 6322 6981 -24 229 313 31 31 chr4 68165389 68165485 -116123177 + L2 LINE L2 3169 3264 -8 2210 106 0 20 chr4 68166119 68166421 -116122241 + AluSg SINE Alu 1 296 -14 232 282 0 28 chr4 68167370 68167441 -116121221 - LTR16C LTR ERVL 0 491 423 306 217 0 17 chr4 68167501 68167561 -116121101 - LTR16C LTR ERVL -165 326 268 1925 247 30 18 chr4 68168514 68169077 -116119585 - L1MD3 LINE L1 -21 7974 7405 631 250 43 64 chr4 68169315 68169503 -116119159 + MIR SINE MIR 36 219 -43 311 248 222 39 chr4 68171873 68172103 -116116559 + L1MA10 LINE L1 1073 1344 -5505 239 275 143 0 chr4 68172930 68173021 -116115641 + MIR SINE MIR 99 202 -60 185 344 0 0 chr4 68173605 68173666 -116114996 - L2 LINE L2 -6 3307 3247 21 36 0 0 chr4 68173746 68173774 -116114888 + AT_rich Low_complexity Low_complexity 1 28 0 488 311 93 19 chr4 68174448 68174718 -116113944 + L1MEc LINE L1 1911 2200 -4196 364 235 0 12 chr4 68174769 68174854 -116113808 + MLT1F1 LTR MaLR 39 122 -445 2442 201 23 45 chr4 68174855 68175457 -116113205 + L1MD3 LINE L1 7402 7990 -5 398 223 58 0 chr4 68175460 68175581 -116113081 + L1MEc LINE L1 2186 2313 -4083 1416 111 58 23 chr4 68175597 68175858 -116112804 + L1MA5A LINE L1 6025 6294 -3 32 75 0 0 chr4 68175977 68176044 -116112618 + AT_rich Low_complexity Low_complexity 1 67 0 787 185 0 0 chr4 68176202 68176332 -116112330 + FRAM SINE Alu 32 161 -15 385 301 101 17 chr4 68176341 68176637 -116112025 + L1MEc LINE L1 2547 2867 -3348 219 315 67 0 chr4 68178112 68178201 -116110461 - MIR SINE MIR -52 210 116 535 266 163 65 chr4 68178204 68178621 -116110041 - MLT1K LTR MaLR -124 464 7 466 285 57 31 chr4 68179934 68180127 -116108535 + MIR SINE MIR 34 231 -31 2974 190 22 2 chr4 68181056 68181603 -116107059 + Tigger1 DNA MER2_type 1 558 -1860 1550 217 18 23 chr4 68181604 68182041 -116106621 + L1MA10 LINE L1 1699 2133 -4646 8568 216 50 16 chr4 68182064 68183268 -116105394 + L1MA10 LINE L1 3439 4600 -2248 2163 107 14 0 chr4 68183268 68183557 -116105105 + AluSg SINE Alu 1 293 -17 8568 216 50 16 chr4 68183557 68184206 -116104456 + L1MA10 LINE L1 4600 5389 -1459 1534 245 34 6 chr4 68184206 68184561 -116104101 - MLT1A1 LTR MaLR 0 365 1 8568 216 50 16 chr4 68184561 68185021 -116103641 + L1MA10 LINE L1 5389 5832 -1016 4093 200 27 40 chr4 68184998 68185432 -116103230 + L1MA10 LINE L1 6057 6495 -541 * 247 78 39 0 chr4 68185432 68185483 -116103179 + (CA)n Simple_repeat Simple_repeat 2 54 0 4093 200 27 40 chr4 68185483 68186041 -116102621 + L1MA10 LINE L1 6495 7036 0 1480 79 25 0 chr4 68187303 68187506 -116101156 - L1PA8 LINE L1 -5 6167 5960 2155 96 0 54 chr4 68187744 68188057 -116100605 + AluSc SINE Alu 1 296 -13 833 184 53 171 chr4 68188879 68189389 -116099273 + LTR37B LTR ERV1 1 450 -18 499 315 79 12 chr4 68189909 68190074 -116098588 + MLT1K LTR MaLR 41 216 -372 294 341 22 22 chr4 68190891 68191026 -116097636 - L2 LINE L2 -2 3270 3136 222 37 0 0 chr4 68191038 68191065 -116097597 + (TC)n Simple_repeat Simple_repeat 2 28 0 * 1078 79 4 8 chr4 68191064 68191307 -116097355 + (TA)n Simple_repeat Simple_repeat 1 242 0 462 197 63 16 chr4 68191357 68191484 -116097178 + MER112 DNA MER1_type 89 221 -39 373 335 79 29 chr4 68191492 68191810 -116096852 - L2 LINE L2 -196 3076 2742 209 369 41 16 chr4 68191839 68191961 -116096701 - L2 LINE L2 -655 2659 2535 341 273 63 42 chr4 68192030 68192173 -116096489 - MER5B DNA MER1_type -19 159 14 1507 311 84 41 chr4 68192195 68192685 -116095977 + L2 LINE L2 2146 2689 -624 2080 136 3 0 chr4 68192685 68192979 -116095683 - AluSx SINE Alu -15 297 3 1507 311 84 41 chr4 68192979 68193379 -116095283 + L2 LINE L2 2689 3070 -243 252 349 68 7 chr4 68193415 68193561 -116095101 + L2 LINE L2 3159 3313 0 555 283 148 17 chr4 68193748 68193978 -116094684 + MIR SINE MIR 3 262 0 237 222 0 0 chr4 68196538 68196601 -116092061 + CT-rich Low_complexity Low_complexity 6 68 0 482 256 66 40 chr4 68196953 68197180 -116091482 - L2 LINE L2 -236 3036 2804 2739 176 46 63 chr4 68197213 68197883 -116090779 - L1MB7 LINE L1 -115 6069 5411 12607 153 44 20 chr4 68198504 68198682 -116089980 - Tigger1 DNA MER2_type 0 2418 2246 2175 141 0 6 chr4 68198682 68198995 -116089667 - 7SLRNA srpRNA srpRNA -5 315 5 12607 153 44 20 chr4 68198995 68201178 -116087484 - Tigger1 DNA MER2_type -172 2246 1 1312 269 58 30 chr4 68201589 68202079 -116086583 + L1ME2 LINE L1 4721 5254 -910 2531 58 0 0 chr4 68202079 68202387 -116086275 + AluY SINE Alu 1 308 -3 1312 269 58 30 chr4 68202387 68202813 -116085849 + L1ME2 LINE L1 5254 5667 -497 1243 266 106 26 chr4 68202824 68203316 -116085346 - MLT1H1 LTR MaLR -13 542 12 1393 194 102 57 chr4 68203328 68203787 -116084875 + L1ME2 LINE L1 5676 6155 -9 21 36 0 0 chr4 68206443 68206471 -116082191 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr4 68206690 68206720 -116081942 + AT_rich Low_complexity Low_complexity 1 30 0 3847 53 4 0 chr4 68207019 68207513 -116081149 - L1PA5 LINE L1 -1304 4842 4347 7330 38 0 0 chr4 68207513 68208875 -116079787 + L1PA5 LINE L1 4822 6183 0 21 57 0 0 chr4 68213868 68213903 -116074759 + AT_rich Low_complexity Low_complexity 1 35 0 210 37 0 0 chr4 68213967 68213994 -116074668 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 207 65 65 0 chr4 68214702 68214748 -116073914 + (TA)n Simple_repeat Simple_repeat 1 49 0 1953 137 7 0 chr4 68215684 68215976 -116072686 - AluSx SINE Alu -16 296 3 344 311 78 69 chr4 68216035 68216395 -116072267 + L2 LINE L2 2930 3292 -21 2158 98 7 10 chr4 68216749 68217044 -116071618 - AluSc SINE Alu -5 304 11 267 250 12 12 chr4 68217322 68217402 -116071260 + GA-rich Low_complexity Low_complexity 5 84 0 215 253 13 0 chr4 68217437 68217516 -116071146 + CT-rich Low_complexity Low_complexity 1 80 0 23 0 0 0 chr4 68217662 68217685 -116070977 + AT_rich Low_complexity Low_complexity 1 23 0 1478 63 15 10 chr4 68217703 68217908 -116070754 - L1MA1 LINE L1 -9 6293 6088 23 0 0 0 chr4 68219127 68219150 -116069512 + AT_rich Low_complexity Low_complexity 1 23 0 2098 163 79 56 chr4 68220062 68220566 -116068096 - LTR44 LTR ERV1 -2 517 2 32 57 0 0 chr4 68221665 68221718 -116066944 + AT_rich Low_complexity Low_complexity 1 53 0 312 314 51 17 chr4 68222760 68222878 -116065784 - MIR SINE MIR -23 239 118 919 242 42 8 chr4 68224376 68224616 -116064046 + MIR SINE MIR 15 262 0 337 294 148 17 chr4 68224625 68224778 -116063884 - MIR SINE MIR -59 149 2 6457 140 24 36 chr4 68225286 68225922 -116062740 - Tigger3b DNA MER2_type -1797 1231 616 1157 226 73 4 chr4 68225922 68226197 -116062465 - AluJo SINE Alu -7 295 2 6457 140 24 36 chr4 68226197 68226806 -116061856 - Tigger3b DNA MER2_type -2412 616 1 243 0 0 0 chr4 68227160 68227187 -116061475 + (TG)n Simple_repeat Simple_repeat 2 28 0 259 329 12 0 chr4 68227257 68227339 -116061323 - L2 LINE L2 -218 3054 2972 678 25 0 0 chr4 68228328 68228408 -116060254 + (T)n Simple_repeat Simple_repeat 1 80 0 1905 215 44 38 chr4 68229896 68230398 -116058264 - MLT1D LTR MaLR 0 505 1 205 402 29 17 chr4 68230842 68231016 -116057646 - L2 LINE L2 -250 3022 2847 372 229 119 9 chr4 68231155 68231264 -116057398 + MIR SINE MIR 68 188 -74 214 200 0 20 chr4 68232060 68232110 -116056552 + (TATG)n Simple_repeat Simple_repeat 4 52 0 382 256 5 98 chr4 68232115 68232330 -116056332 + MER112 DNA MER1_type 66 260 0 337 167 225 0 chr4 68232841 68232951 -116055711 + MIR SINE MIR 50 189 -73 6702 261 37 47 chr4 68233272 68235004 -116053658 + L1M2 LINE L1 17 1765 -5084 2119 131 3 0 chr4 68235004 68235301 -116053361 - AluSx SINE Alu -14 298 1 6702 261 37 47 chr4 68235301 68235375 -116053287 + L1M2 LINE L1 1765 1838 -5011 1538 200 46 4 chr4 68235375 68235655 -116053007 - AluJb SINE Alu -20 292 1 6702 261 37 47 chr4 68235655 68236174 -116052488 + L1M2 LINE L1 1838 2319 -4530 15693 240 23 17 chr4 68236194 68242958 -116045704 - L1P4 LINE L1 -669 6934 4 708 196 14 7 chr4 68243354 68243502 -116045160 - MER41D LTR ERV1 -343 214 66 * 904 189 38 0 chr4 68243500 68243685 -116044977 - MER41D LTR ERV1 -365 192 1 2890 210 55 12 chr4 68243703 68244647 -116044015 + L1M2 LINE L1 2754 3741 -3107 4262 241 91 5 chr4 68244657 68245695 -116042967 + L1PA13 LINE L1 1 1127 -5660 6092 239 20 22 chr4 68245695 68247487 -116041175 + L1PA13 LINE L1 1662 3450 -3347 1648 113 0 4 chr4 68247490 68247729 -116040933 - THE1B LTR MaLR 0 364 127 7772 119 41 45 chr4 68247729 68249077 -116039585 - THE1B-int LTR MaLR -237 1343 1 2263 117 16 53 chr4 68249078 68249117 -116039545 - THE1B LTR MaLR -1 363 324 2296 121 0 0 chr4 68249117 68249422 -116039240 + AluSx SINE Alu 1 305 -7 2263 117 16 53 chr4 68249422 68249757 -116038905 - THE1B LTR MaLR -40 324 3 6332 201 3 1 chr4 68249759 68251088 -116037574 + L1PA13 LINE L1 3449 4779 -2018 1993 118 0 0 chr4 68251087 68251391 -116037271 + L1PA13 LINE L1 6258 6561 -258 * 10557 42 5 0 chr4 68251390 68252758 -116035904 - L1PA4 LINE L1 -1102 5044 3670 7348 30 6 1 chr4 68252758 68253882 -116034780 + L1PA4 LINE L1 5017 6144 -11 1769 109 4 14 chr4 68253903 68254179 -116034483 + L1PA13 LINE L1 6542 6814 0 5832 204 31 19 chr4 68254180 68254688 -116033974 + L1 LINE L1 3025 3525 -2621 2383 84 0 3 chr4 68254688 68254984 -116033678 + AluY SINE Alu 1 295 -16 5832 204 31 19 chr4 68254984 68255111 -116033551 + L1 LINE L1 3525 3649 -2497 2628 33 3 0 chr4 68255111 68255410 -116033252 + AluY SINE Alu 1 300 -11 5832 204 31 19 chr4 68255410 68256341 -116032321 + L1 LINE L1 3649 4611 -1535 6493 130 20 19 chr4 68256347 68257415 -116031247 + MER11C LTR ERVK 3 1071 0 3016 133 43 4 chr4 68257415 68258184 -116030478 + HERVK11 LTR ERVK 1 851 -7102 2810 95 39 4 chr4 68258184 68258763 -116029899 + HERVK11 LTR ERVK 1165 2700 -5253 * 12603 76 1 0 chr4 68258755 68260443 -116028219 + HERVK11 LTR ERVK 2912 4601 -3352 5206 52 4 1 chr4 68260441 68261153 -116027509 + HERVK11 LTR ERVK 5525 6295 -1658 * 228 229 0 0 chr4 68263059 68263107 -116025555 - L2 LINE L2 0 3313 3266 382 188 0 0 chr4 68263881 68263950 -116024712 - MER41B LTR ERV1 -88 547 479 222 37 0 0 chr4 68263955 68263982 -116024680 + (TG)n Simple_repeat Simple_repeat 2 28 0 1973 258 43 18 chr4 68266571 68267173 -116021489 - LTR68 LTR ERV1 -123 617 1 219 299 124 55 chr4 68267225 68267426 -116021236 + MIR SINE MIR 11 225 -37 2029 214 14 40 chr4 68267492 68268011 -116020651 - MLT1D LTR MaLR 0 505 1 527 250 151 0 chr4 68269408 68269580 -116019082 + MIR SINE MIR 65 262 0 1960 133 51 56 chr4 68269601 68270120 -116018542 + LTR34 LTR ERV1 6 635 -64 1833 174 57 67 chr4 68270125 68270544 -116018118 - MSTA LTR MaLR -9 419 5 514 114 0 0 chr4 68270555 68270625 -116018037 + LTR34 LTR ERV1 630 699 0 214 411 0 0 chr4 68271602 68271770 -116016892 + (TGG)n Simple_repeat Simple_repeat 1 168 0 1433 120 38 0 chr4 68272460 68272669 -116015993 + AluY SINE Alu 85 301 -10 246 266 38 19 chr4 68274885 68275043 -116013619 + (TA)n Simple_repeat Simple_repeat 2 162 0 919 301 34 17 chr4 68275423 68275892 -116012770 - L1ME LINE L1 -392 5770 5294 625 298 116 13 chr4 68276035 68276484 -116012178 - L1ME LINE L1 -1091 5055 4561 461 278 80 15 chr4 68276651 68276915 -116011747 - L1ME LINE L1 -1840 4306 4016 214 105 35 35 chr4 68276920 68276977 -116011685 + (TTATA)n Simple_repeat Simple_repeat 4 60 0 340 273 42 67 chr4 68278134 68278299 -116010363 - LTR16C LTR ERVL -20 471 311 306 312 24 8 chr4 68278352 68278477 -116010185 + L1MEc LINE L1 1331 1457 -4939 2286 117 42 11 chr4 68278646 68279006 -116009656 - THE1C LTR MaLR -4 371 1 241 309 12 12 chr4 68279327 68279408 -116009254 + MIR SINE MIR 52 132 -130 278 341 22 89 chr4 68279449 68279628 -116009034 + L2 LINE L2 2887 3053 -219 222 339 22 0 chr4 68279703 68279796 -116008866 - MIR SINE MIR -93 115 36 4015 117 0 0 chr4 68280433 68281025 -116007637 - L1PA13 LINE L1 -5 6158 5567 16875 176 48 4 chr4 68281262 68284849 -116003813 - L1PA13 LINE L1 -612 5556 1815 235 374 22 11 chr4 68284858 68284949 -116003713 + L2 LINE L2 2687 2778 -536 700 173 60 0 chr4 68284964 68285097 -116003565 - MLT1B LTR MaLR -1 389 249 33 66 0 0 chr4 68285226 68285287 -116003375 + AT_rich Low_complexity Low_complexity 1 61 0 314 292 0 0 chr4 68285388 68285477 -116003185 - L1MC4 LINE L1 -1339 6703 6615 218 164 0 16 chr4 68285481 68285542 -116003120 + (TA)n Simple_repeat Simple_repeat 2 61 0 333 258 136 63 chr4 68285766 68286274 -116002388 + L1MEc LINE L1 2744 3288 -2927 626 343 107 26 chr4 68286292 68286796 -116001866 + L1MEc LINE L1 3388 3932 -2283 210 330 27 18 chr4 68287792 68287904 -116000758 + MIR SINE MIR 149 261 -1 2810 16 0 0 chr4 68288351 68288661 -116000001 + AluYb8 SINE Alu 1 310 -8 203 149 0 21 chr4 68289086 68289133 -115999529 + (CATA)n Simple_repeat Simple_repeat 3 48 0 308 349 0 9 chr4 68289139 68289248 -115999414 - MIR SINE MIR -38 224 117 193 188 0 0 chr4 68290132 68290164 -115998498 - L2 LINE L2 -14 3299 3268 22 0 0 0 chr4 68290253 68290275 -115998387 + AT_rich Low_complexity Low_complexity 1 22 0 362 211 164 19 chr4 68290530 68290634 -115998028 + L1MC4 LINE L1 6855 6973 -1069 1485 266 116 17 chr4 68290661 68291182 -115997480 - L2 LINE L2 -305 3008 2440 223 189 19 0 chr4 68292163 68292216 -115996446 + (CA)n Simple_repeat Simple_repeat 2 55 0 1723 133 74 34 chr4 68292644 68292968 -115995694 - MER1B DNA MER1_type 0 337 1 23 0 0 0 chr4 68293603 68293626 -115995036 + AT_rich Low_complexity Low_complexity 1 23 0 490 361 44 36 chr4 68293636 68294026 -115994636 - LTR16C LTR ERVL 0 491 99 516 325 19 0 chr4 68294549 68294703 -115993959 - ERVL LTR ERVL -700 5064 4908 297 0 0 0 chr4 68294882 68294915 -115993747 + (TA)n Simple_repeat Simple_repeat 1 33 0 1077 217 9 5 chr4 68295967 68296184 -115992478 + MER20 DNA MER1_type 2 219 0 246 32 0 0 chr4 68297536 68297567 -115991095 + (CA)n Simple_repeat Simple_repeat 2 32 0 1254 125 0 0 chr4 68299025 68299225 -115989437 - L1MA6 LINE L1 -8 6292 6093 354 325 87 0 chr4 68299399 68299525 -115989137 + MIR SINE MIR 126 262 0 319 344 85 0 chr4 68299596 68299785 -115988877 - MIR SINE MIR -6 256 52 7427 33 0 0 chr4 68300117 68301208 -115987454 - L1PA4 LINE L1 -1 6154 5060 50 42 0 0 chr4 68301522 68301593 -115987069 + AT_rich Low_complexity Low_complexity 1 71 0 773 236 28 6 chr4 68301596 68301778 -115986884 - MIR SINE MIR -3 259 74 25 31 0 0 chr4 68302029 68302061 -115986601 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr4 68302269 68302293 -115986369 + AT_rich Low_complexity Low_complexity 1 24 0 241 306 65 0 chr4 68303407 68303469 -115985193 + MIR SINE MIR 41 106 -102 10397 30 0 1 chr4 68303648 68305654 -115983008 + L1PA3 LINE L1 4145 6152 -3 561 178 0 0 chr4 68306002 68306092 -115982570 + 5S rRNA rRNA 1 90 -31 180 0 0 0 chr4 68306677 68306697 -115981965 + (CA)n Simple_repeat Simple_repeat 1 20 0 413 252 37 0 chr4 68306802 68306909 -115981753 + MIR SINE MIR 76 186 -76 2160 157 100 29 chr4 68307331 68307783 -115980879 - MER31A LTR ERV1 0 485 2 381 332 98 53 chr4 68308409 68308542 -115980120 - MIR SINE MIR -2 260 134 2154 104 7 10 chr4 68308542 68308841 -115979821 - AluSx SINE Alu -14 298 1 381 332 98 53 chr4 68308841 68308951 -115979711 - MIR SINE MIR -128 134 6 393 356 77 22 chr4 68309488 68309710 -115978952 - MIR SINE MIR -9 253 20 471 279 43 7 chr4 68309820 68309960 -115978702 - MIR SINE MIR -19 243 99 189 0 0 0 chr4 68310090 68310111 -115978551 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 333 0 0 0 chr4 68310110 68310147 -115978515 + (TG)n Simple_repeat Simple_repeat 2 38 0 672 301 20 24 chr4 68310148 68310394 -115978268 - MIR SINE MIR -10 252 8 2581 114 17 0 chr4 68310652 68311010 -115977652 - THE1B LTR MaLR 0 364 1 505 256 155 29 chr4 68311620 68311827 -115976835 + MLT1J1 LTR MaLR 185 417 -29 268 245 149 11 chr4 68312022 68312116 -115976546 + L2 LINE L2 3136 3242 -30 32 57 0 0 chr4 68312143 68312196 -115976466 + AT_rich Low_complexity Low_complexity 1 53 0 224 119 60 60 chr4 68312246 68312330 -115976332 + (TATAA)n Simple_repeat Simple_repeat 4 87 0 438 313 50 34 chr4 68312343 68312522 -115976140 - MIR SINE MIR -2 260 79 767 211 95 11 chr4 68313124 68313314 -115975348 - MER3 DNA MER1_type -3 206 1 637 135 0 68 chr4 68313322 68313455 -115975207 - Charlie1 DNA MER1_type -1 2760 2637 1850 153 41 3 chr4 68313455 68313750 -115974912 + AluJb SINE Alu 1 306 -6 3886 152 20 18 chr4 68314923 68315629 -115973033 - MER50 LTR ERV1 -27 707 1 26 0 0 0 chr4 68316435 68316461 -115972201 + AT_rich Low_complexity Low_complexity 1 26 0 441 249 29 29 chr4 68317794 68317967 -115970695 + MER104 DNA Tc2 1 173 -7 1820 150 3 21 chr4 68318625 68318934 -115969728 + AluSx SINE Alu 1 304 0 2357 132 14 16 chr4 68318970 68319335 -115969327 + THE1B LTR MaLR 1 364 0 230 226 36 36 chr4 68319473 68319557 -115969105 + L1MEd LINE L1 3 86 -6033 3228 165 75 46 chr4 68319713 68320043 -115968619 + L1MA9 LINE L1 5487 5806 -506 324 0 0 0 chr4 68320043 68320079 -115968583 + (CA)n Simple_repeat Simple_repeat 1 36 0 3228 165 75 46 chr4 68320079 68320546 -115968116 + L1MA9 LINE L1 5806 6307 -5 661 290 53 37 chr4 68321132 68321377 -115967285 - MIR SINE MIR 0 262 14 26 0 0 0 chr4 68321941 68321967 -115966695 + AT_rich Low_complexity Low_complexity 1 26 0 471 333 62 43 chr4 68322583 68323021 -115965641 + L1 LINE L1 4023 4468 -1678 255 277 30 30 chr4 68323107 68323273 -115965389 + L1 LINE L1 4539 4704 -1442 1172 134 10 10 chr4 68323348 68323542 -115965120 - L1PB1 LINE L1 0 6151 5958 236 328 60 9 chr4 68323567 68323799 -115964863 + L1 LINE L1 4770 5013 -1133 24 53 0 0 chr4 68323875 68323913 -115964749 + AT_rich Low_complexity Low_complexity 1 38 0 295 382 15 15 chr4 68324569 68324700 -115963962 + MIR SINE MIR 16 146 -62 302 316 88 22 chr4 68324993 68325129 -115963533 - MIR SINE MIR -63 199 55 498 276 77 35 chr4 68325716 68326002 -115962660 - L1MEd LINE L1 -4864 1341 1044 245 358 20 13 chr4 68326262 68326413 -115962249 - L1MEd LINE L1 -5373 832 681 567 323 32 32 chr4 68326586 68326899 -115961763 - L1MEd LINE L1 -5775 430 118 850 242 67 17 chr4 68327905 68328158 -115960504 + MLT1E2 LTR MaLR 354 542 0 21 0 0 0 chr4 68328180 68328201 -115960461 + AT_rich Low_complexity Low_complexity 1 21 0 5702 99 45 1 chr4 68330107 68332016 -115956646 + L1PA13 LINE L1 4217 6160 -3 340 277 96 12 chr4 68332085 68332251 -115956411 - L1MEd LINE L1 -6155 241 62 1588 182 19 73 chr4 68332482 68332894 -115955768 - MLT1B LTR MaLR 0 390 1 250 345 91 86 chr4 68332989 68333340 -115955322 - L2 LINE L2 -23 3249 2897 717 23 0 0 chr4 68333535 68333623 -115955039 + L1PA3 LINE L1 6065 6152 -3 21 0 0 0 chr4 68333623 68333644 -115955018 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 68334030 68334052 -115954610 + AT_rich Low_complexity Low_complexity 1 22 0 526 295 46 29 chr4 68334218 68334456 -115954206 + MLT1H LTR MaLR 2 256 -293 222 387 27 9 chr4 68334923 68335034 -115953628 + MIR SINE MIR 40 152 -56 604 295 30 13 chr4 68335700 68335934 -115952728 - LTR16C LTR ERVL 0 491 254 1112 328 38 26 chr4 68335936 68336899 -115951763 + L1MEc LINE L1 34 1008 -5388 25 0 0 0 chr4 68336917 68336942 -115951720 + AT_rich Low_complexity Low_complexity 1 25 0 543 258 102 18 chr4 68337796 68337963 -115950699 - MIR SINE MIR -72 190 10 220 175 18 35 chr4 68339622 68339679 -115948983 + L2 LINE L2 3201 3256 -16 308 279 101 133 chr4 68340693 68341325 -115947337 - L1M2 LINE L1 -5442 1407 796 180 232 137 53 chr4 68342625 68342720 -115945942 + MIR SINE MIR 155 257 -5 504 0 0 0 chr4 68342785 68342841 -115945821 + (TA)n Simple_repeat Simple_repeat 1 56 0 476 186 38 158 chr4 68344090 68344273 -115944389 - MIR SINE MIR -20 242 82 2202 234 29 5 chr4 68344549 68345105 -115943557 + L1MD3 LINE L1 7411 7979 -16 28 61 0 0 chr4 68345105 68345154 -115943508 + AT_rich Low_complexity Low_complexity 1 49 0 246 261 15 15 chr4 68346124 68346189 -115942473 + LTR16C LTR ERVL 262 326 -165 713 323 67 36 chr4 68346710 68347097 -115941565 + MLT1K LTR MaLR 189 587 -1 183 304 71 124 chr4 68347176 68347459 -115941203 - L2 LINE L2 0 3272 3005 206 387 147 5 chr4 68347619 68347810 -115940852 + L2 LINE L2 2994 3211 -61 181 292 21 0 chr4 68347974 68348022 -115940640 + MIR SINE MIR 204 252 -10 * 190 231 0 77 chr4 68347990 68348042 -115940620 + L2 LINE L2 3266 3313 0 2162 111 3 7 chr4 68348839 68349178 -115939484 - AluSp SINE Alu 0 313 1 23 0 0 0 chr4 68349290 68349313 -115939349 + AT_rich Low_complexity Low_complexity 1 23 0 188 378 78 0 chr4 68350231 68350321 -115938341 - L2 LINE L2 -8 3264 3168 333 231 246 0 chr4 68351052 68351182 -115937480 - MIR SINE MIR -73 189 28 374 255 52 73 chr4 68351677 68351869 -115936793 - MER112 DNA MER1_type -7 253 66 216 135 0 0 chr4 68351888 68351925 -115936737 + (CATA)n Simple_repeat Simple_repeat 2 38 0 1214 180 34 9 chr4 68352670 68352903 -115935759 + MSTB LTR MaLR 1 239 -187 341 53 0 53 chr4 68352907 68352950 -115935712 - MLT2A1 LTR ERVL 0 444 403 291 54 0 0 chr4 68352950 68352987 -115935675 + (TG)n Simple_repeat Simple_repeat 2 38 0 341 53 0 53 chr4 68352987 68353000 -115935662 - MLT2A1 LTR ERVL -41 403 391 2877 96 0 2 chr4 68353164 68353569 -115935093 - MLT2A1 LTR ERVL -40 404 1 1005 137 49 33 chr4 68353571 68353754 -115934908 + MSTB LTR MaLR 241 426 0 1340 128 98 0 chr4 68354092 68354295 -115934367 + AluSx SINE Alu 1 223 -89 23 0 0 0 chr4 68354323 68354346 -115934316 + AT_rich Low_complexity Low_complexity 1 23 0 410 293 33 33 chr4 68354437 68354587 -115934075 - MIR SINE MIR -13 249 100 1714 196 94 46 chr4 68355351 68355443 -115933219 + MLT1D LTR MaLR 2 88 -417 198 0 0 0 chr4 68355443 68355465 -115933197 + (TA)n Simple_repeat Simple_repeat 2 23 0 1714 196 94 46 chr4 68355465 68355851 -115932811 + MLT1D LTR MaLR 88 503 -2 201 222 0 0 chr4 68356740 68356776 -115931886 + G-rich Low_complexity Low_complexity 6 41 0 293 292 26 9 chr4 68358346 68358459 -115930203 + L2 LINE L2 2940 3054 -218 228 211 70 0 chr4 68358527 68358598 -115930064 + L1MC4 LINE L1 6616 6691 -1351 206 361 0 0 chr4 68358836 68358897 -115929765 + L2 LINE L2 3114 3174 -98 6377 163 38 6 chr4 68358916 68360109 -115928553 + Tigger3b DNA MER2_type 1 1231 0 22 35 0 0 chr4 68360590 68360619 -115928043 + AT_rich Low_complexity Low_complexity 1 29 0 184 297 0 31 chr4 68360916 68360980 -115927682 + MIR SINE MIR 53 114 -148 323 294 59 17 chr4 68362258 68362377 -115926285 + MIR SINE MIR 119 242 -20 350 84 0 0 chr4 68363763 68363813 -115924849 + AluSp/q SINE Alu 235 284 -19 316 0 0 0 chr4 68363813 68363848 -115924814 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2243 98 3 7 chr4 68364003 68364299 -115924363 + AluSc SINE Alu 14 308 -1 231 241 0 0 chr4 68364950 68365004 -115923658 - MLT1G3 LTR MaLR -228 302 249 255 297 14 0 chr4 68365063 68365137 -115923525 + GA-rich Low_complexity Low_complexity 4 78 0 265 196 20 0 chr4 68366082 68366133 -115922529 - L2 LINE L2 -1 3312 3261 249 262 52 43 chr4 68367238 68367358 -115921304 - MLT1H LTR MaLR -4 589 428 225 326 45 11 chr4 68367390 68367479 -115921183 - MLT1H LTR MaLR -196 399 308 227 227 15 0 chr4 68367533 68367599 -115921063 + GA-rich Low_complexity Low_complexity 5 71 0 192 179 0 0 chr4 68367667 68367706 -115920956 + C-rich Low_complexity Low_complexity 5 43 0 188 189 54 0 chr4 68368075 68368112 -115920550 + MIR3 SINE MIR 120 158 -50 354 276 112 8 chr4 68368174 68368308 -115920354 - MIR SINE MIR -92 170 23 1507 83 10 0 chr4 68368429 68368621 -115920041 + AluY SINE Alu 109 302 -9 282 29 0 0 chr4 68369593 68369628 -115919034 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1580 118 9 4 chr4 68369634 68369862 -115918800 + AluSg/x SINE Alu 79 307 -5 44 46 0 0 chr4 68370249 68370314 -115918348 + AT_rich Low_complexity Low_complexity 1 65 0 348 298 96 11 chr4 68370568 68370662 -115918000 - L2 LINE L2 -35 3237 3136 316 315 118 42 chr4 68371234 68371633 -115917029 - L2 LINE L2 -218 3054 2630 1860 44 0 0 chr4 68374195 68374423 -115914239 + L1P LINE L1 4133 4360 -1786 9437 30 6 0 chr4 68374423 68376330 -115912332 + L1PA3 LINE L1 4242 6152 -3 282 56 0 0 chr4 68380397 68380433 -115908229 + (TA)n Simple_repeat Simple_repeat 2 37 0 735 257 73 17 chr4 68381511 68381869 -115906793 + L1M4 LINE L1 2245 2622 -3524 1664 282 45 13 chr4 68381885 68382665 -115905997 + L1M4 LINE L1 4076 4880 -1266 666 77 48 29 chr4 68382665 68382769 -115905893 - Tigger1 DNA MER2_type -1089 1329 1224 588 268 77 9 chr4 68382774 68382994 -115905668 - L1ME LINE L1 -601 5563 5329 6589 158 15 3 chr4 68382994 68384080 -115904582 + Tigger1 DNA MER2_type 1320 2418 0 183 80 0 0 chr4 68384572 68384597 -115904065 + (CAAT)n Simple_repeat Simple_repeat 1 25 0 3262 200 66 43 chr4 68385248 68386723 -115901939 + L1MB7 LINE L1 4656 6168 -16 386 258 16 65 chr4 68386729 68386853 -115901809 + MER5A DNA MER1_type 71 188 -1 194 91 30 0 chr4 68386962 68386995 -115901667 + (TAA)n Simple_repeat Simple_repeat 3 36 0 1601 155 52 85 chr4 68387011 68387399 -115901263 + THE1C LTR MaLR 1 375 0 317 174 14 0 chr4 68387573 68387642 -115901020 + CT-rich Low_complexity Low_complexity 2 71 0 557 329 84 30 chr4 68387784 68388324 -115900338 - L2 LINE L2 -47 3266 2702 2307 119 0 0 chr4 68388405 68388716 -115899946 + AluSx SINE Alu 1 311 -1 685 299 33 14 chr4 68388762 68388973 -115899689 + MER58A DNA MER1_type 10 224 0 732 340 42 23 chr4 68388974 68389359 -115899303 - L2 LINE L2 -703 2611 2220 244 295 105 9 chr4 68389560 68389665 -115898997 - MIR SINE MIR -81 181 67 516 296 53 73 chr4 68389899 68390200 -115898462 - LTR67 LTR ERVL -19 538 244 2627 159 8 2 chr4 68391459 68391943 -115896719 - L1MA3 LINE L1 0 6305 5819 224 160 0 40 chr4 68392508 68392558 -115896104 + CT-rich Low_complexity Low_complexity 5 52 0 2260 116 45 17 chr4 68393792 68394146 -115894516 - THE1B LTR MaLR 0 364 1 28 29 0 0 chr4 68394843 68394878 -115893784 + AT_rich Low_complexity Low_complexity 1 35 0 414 329 40 0 chr4 68395598 68395747 -115892915 - L2 LINE L2 0 3313 3159 1528 327 43 22 chr4 68395976 68396645 -115892017 - L2 LINE L2 -482 2832 2150 462 225 51 43 chr4 68396675 68396813 -115891849 + MER5B DNA MER1_type 21 159 -19 284 315 113 48 chr4 68396894 68397346 -115891316 + L2 LINE L2 2551 3055 -217 204 40 0 0 chr4 68397550 68397575 -115891087 + (TG)n Simple_repeat Simple_repeat 1 25 0 315 329 7 36 chr4 68397587 68397724 -115890938 + L2 LINE L2 3139 3271 -1 31 26 0 0 chr4 68397872 68397910 -115890752 + AT_rich Low_complexity Low_complexity 1 38 0 370 319 115 0 chr4 68398498 68398611 -115890051 - MLT1K LTR MaLR -373 215 90 291 28 0 0 chr4 68399216 68399252 -115889410 + (GA)n Simple_repeat Simple_repeat 2 37 0 * 360 0 0 0 chr4 68399251 68399291 -115889371 + (TG)n Simple_repeat Simple_repeat 2 41 0 437 202 29 0 chr4 68399330 68399434 -115889228 - LTR37B LTR ERV1 -163 305 199 21 0 0 0 chr4 68399749 68399770 -115888892 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr4 68400275 68400315 -115888347 + AT_rich Low_complexity Low_complexity 1 40 0 5148 212 42 3 chr4 68400610 68401864 -115886798 - L1 LINE L1 -1603 5503 4202 5034 155 14 14 chr4 68401882 68403414 -115885248 - L1PA15 LINE L1 -2 7601 6069 9744 271 27 34 chr4 68403414 68405420 -115883242 - L1PA15 LINE L1 -1961 5623 3604 2242 115 0 0 chr4 68405420 68405716 -115882946 - AluSc SINE Alu -13 296 1 9744 271 27 34 chr4 68405716 68408765 -115879897 - L1PA15 LINE L1 -3980 3604 65 511 228 102 44 chr4 68408766 68408983 -115879679 - L1 LINE L1 -2867 4239 4036 2084 136 0 0 chr4 68408983 68409278 -115879384 - AluSq SINE Alu -18 295 1 511 228 102 44 chr4 68409278 68409326 -115879336 - L1 LINE L1 -3070 4036 3992 2160 116 10 0 chr4 68409326 68409627 -115879035 - AluSx SINE Alu -8 304 1 511 228 102 44 chr4 68409627 68409702 -115878960 - L1 LINE L1 -3114 3992 3878 42 77 0 0 chr4 68409703 68409794 -115878868 + AT_rich Low_complexity Low_complexity 1 91 0 391 218 167 0 chr4 68409805 68409979 -115878683 - L1 LINE L1 -3204 3902 3700 1858 272 64 8 chr4 68409997 68411076 -115877586 - L1 LINE L1 -4645 2392 1 3115 179 105 50 chr4 68411575 68411879 -115876783 + L1MC3 LINE L1 5237 4886 -1260 2495 67 0 16 chr4 68411879 68412195 -115876467 + AluY SINE Alu 1 311 0 3115 179 105 50 chr4 68412195 68412742 -115875920 + L1MC3 LINE L1 4885 5401 -745 1215 255 95 1 chr4 68412721 68413156 -115875506 + L1MC3 LINE L1 6330 6841 -944 * 561 227 0 86 chr4 68413178 68413341 -115875321 + L1MC3 LINE L1 7249 7397 -388 2579 52 0 0 chr4 68413406 68413711 -115874951 + AluY SINE Alu 2 306 -5 19513 96 9 4 chr4 68413721 68417355 -115871307 - L1PA7 LINE L1 -3 6151 2500 4595 100 0 21 chr4 68417355 68418036 -115870626 + L1PA7 LINE L1 1832 2498 -3648 295 163 0 0 chr4 68418032 68418081 -115870581 + L1MC3 LINE L1 7387 7435 -350 * 680 210 12 18 chr4 68418088 68418255 -115870407 + L1MC3 LINE L1 7600 7765 -20 1390 273 117 20 chr4 68418273 68419040 -115869622 + HAL1 LINE L1 940 1781 -726 330 299 96 24 chr4 68419425 68419592 -115869070 + HAL1 LINE L1 2321 2499 -8 946 201 57 0 chr4 68419832 68420061 -115868601 - L1MA4 LINE L1 -7 6293 6052 2587 181 16 12 chr4 68420112 68420608 -115868054 + L1MB3 LINE L1 5686 6183 0 264 269 56 46 chr4 68420659 68420767 -115867895 + MIR SINE MIR 148 256 -6 1200 187 50 8 chr4 68421224 68421486 -115867176 - L1MB3 LINE L1 -119 6064 5792 231 146 0 0 chr4 68422014 68422055 -115866607 + (TCC)n Simple_repeat Simple_repeat 3 43 0 21 0 0 0 chr4 68422664 68422685 -115865977 + AT_rich Low_complexity Low_complexity 1 21 0 259 326 33 11 chr4 68423335 68423427 -115865235 + MIR SINE MIR 28 121 -87 264 346 13 0 chr4 68423486 68423564 -115865098 - MIR SINE MIR -172 90 12 1728 254 32 14 chr4 68423574 68424312 -115864350 + L1ME1 LINE L1 4835 5589 -577 10138 174 38 24 chr4 68424321 68425294 -115863368 - L1MA5 LINE L1 -4 6296 5338 2466 63 0 3 chr4 68425294 68425595 -115863067 - AluY SINE Alu -11 300 1 10138 174 38 24 chr4 68425595 68427878 -115860784 - L1MA5 LINE L1 -962 5338 2982 1971 126 20 0 chr4 68428187 68428480 -115860182 + AluSx SINE Alu 2 300 -12 3806 223 81 65 chr4 68428782 68429125 -115859537 + MER109 Unknown Unknown 1 337 -2095 2088 131 21 21 chr4 68429125 68429500 -115859162 + THE1C LTR MaLR 1 375 0 3806 223 81 65 chr4 68429500 68431248 -115857414 + MER109 Unknown Unknown 337 1261 -1171 2236 99 10 26 chr4 68431248 68431561 -115857101 - AluSp SINE Alu -5 308 1 3806 223 81 65 chr4 68431561 68431910 -115856752 + MER109 Unknown Unknown 1261 1603 -829 1995 119 6 66 chr4 68431911 68432231 -115856431 + AluSx SINE Alu 1 301 -11 285 252 19 28 chr4 68432236 68432343 -115856319 - L1M4 LINE L1 -3141 3005 2900 1556 239 105 17 chr4 68432347 68432882 -115855780 + L1ME1 LINE L1 5573 6154 -12 22 0 0 0 chr4 68433293 68433315 -115855347 + AT_rich Low_complexity Low_complexity 1 22 0 22 88 0 0 chr4 68433411 68433468 -115855194 + AT_rich Low_complexity Low_complexity 1 57 0 722 271 137 17 chr4 68435089 68435506 -115853156 - L1ME LINE L1 -447 5723 5257 654 273 118 46 chr4 68435757 68435995 -115852667 + MIR SINE MIR 7 261 -1 286 95 0 0 chr4 68436090 68436132 -115852530 + L1MD3 LINE L1 7239 7280 -715 432 214 165 0 chr4 68436135 68436238 -115852424 + MLT1F1 LTR MaLR 6 125 -442 1047 178 119 16 chr4 68436247 68436355 -115852307 + L1MD3 LINE L1 7414 7510 -485 7763 61 14 9 chr4 68436355 68437357 -115851305 + LTR13 LTR ERVK 1 1007 0 1047 178 119 16 chr4 68437357 68437501 -115851161 + L1MD3 LINE L1 7510 7692 -303 1478 190 35 7 chr4 68437503 68437792 -115850870 + AluJo SINE Alu 1 297 -15 553 147 73 15 chr4 68437820 68437956 -115850706 + L1MD3 LINE L1 7852 7995 0 295 152 15 61 chr4 68438565 68438631 -115850031 - MLT1B LTR MaLR -321 69 7 180 244 122 0 chr4 68438984 68439025 -115849637 + L2 LINE L2 3250 3295 -18 23 0 0 0 chr4 68439333 68439356 -115849306 + AT_rich Low_complexity Low_complexity 1 23 0 274 136 23 0 chr4 68439365 68439409 -115849253 + 5S rRNA rRNA 2 46 -75 1283 242 91 104 chr4 68439675 68440626 -115848036 - LTR1B LTR ERV1 0 1020 1 6994 184 23 34 chr4 68440626 68442039 -115846623 - HUERS-P2 LTR ERV1 0 3088 1691 * 27344 100 13 3 chr4 68442028 68445741 -115842921 + HERVL-A2 LTR ERVL 1903 5654 0 1886 193 47 34 chr4 68445741 68446277 -115842385 + MLT2A2 LTR ERVL 1 554 0 1290 236 86 31 chr4 68446277 68446663 -115841999 - HUERS-P2 LTR ERV1 -6504 587 181 254 181 0 83 chr4 68446705 68446777 -115841885 - HUERS-P2 LTR ERV1 -7020 71 6 1792 233 98 72 chr4 68446780 68447694 -115840968 - LTR1B LTR ERV1 0 1020 1 448 261 48 48 chr4 68447825 68447990 -115840672 - MER63A DNA MER1_type -1 209 45 1278 296 31 13 chr4 68448038 68448491 -115840171 + LTR16B LTR ERVL 1 461 -3 2136 228 72 32 chr4 68448695 68449380 -115839282 - L1ME3A LINE L1 -8 6162 5451 2168 149 26 90 chr4 68449422 68449762 -115838900 - MSTC LTR MaLR 0 428 68 2059 141 3 0 chr4 68449762 68450068 -115838594 - AluSx SINE Alu -5 307 1 2168 149 26 90 chr4 68450068 68450142 -115838520 - MSTC LTR MaLR -360 68 43 2228 111 0 13 chr4 68450142 68450458 -115838204 - AluSq SINE Alu -1 312 1 2168 149 26 90 chr4 68450458 68450499 -115838163 - MSTC LTR MaLR -385 43 1 192 77 0 0 chr4 68451070 68451096 -115837566 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 2412 171 25 75 chr4 68452297 68453047 -115835615 + L1MB3 LINE L1 5096 5793 -390 468 226 11 22 chr4 68453048 68453229 -115835433 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 313 173 0 48 chr4 68453249 68453353 -115835309 + (TA)n Simple_repeat Simple_repeat 2 100 0 2165 147 18 10 chr4 68453440 68453828 -115834834 + L1MB3 LINE L1 5783 6173 -10 195 100 0 0 chr4 68453870 68453900 -115834762 + (TAGA)n Simple_repeat Simple_repeat 3 32 0 22 0 0 0 chr4 68453904 68453926 -115834736 + AT_rich Low_complexity Low_complexity 1 22 0 2005 157 37 0 chr4 68455332 68455815 -115832847 - L1MC3 LINE L1 -6 7779 7189 324 289 9 18 chr4 68455815 68455929 -115832733 - MLT1F1 LTR MaLR -442 125 13 186 103 0 0 chr4 68455970 68455999 -115832663 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 3011 155 43 40 chr4 68456007 68456640 -115832022 - L1MC3 LINE L1 -777 7008 6374 225 192 19 0 chr4 68456839 68456891 -115831771 + L1MA5 LINE L1 6245 6297 -3 23 78 0 0 chr4 68458430 68458481 -115830181 + AT_rich Low_complexity Low_complexity 1 51 0 245 268 0 0 chr4 68458783 68458854 -115829808 + (TA)n Simple_repeat Simple_repeat 2 72 0 207 283 92 75 chr4 68459474 68459647 -115829015 + L2 LINE L2 2836 3011 -261 25 0 0 0 chr4 68459759 68459784 -115828878 + AT_rich Low_complexity Low_complexity 1 25 0 1508 198 32 41 chr4 68459838 68460181 -115828481 - MER65C LTR ERV1 -119 342 3 466 247 61 26 chr4 68460965 68461196 -115827466 - L1MEd LINE L1 -1425 4704 4466 1121 118 0 0 chr4 68461199 68461369 -115827293 - L1PA13 LINE L1 -2 6161 5992 924 184 0 0 chr4 68461369 68461543 -115827119 - L1P LINE L1 -946 5200 5027 322 306 131 31 chr4 68461608 68462127 -115826535 - L1MEd LINE L1 -1713 4416 3846 321 219 47 70 chr4 68462499 68462627 -115826035 - L1MEd LINE L1 -2912 3217 3093 1818 206 103 36 chr4 68462698 68463165 -115825497 - MLT1D LTR MaLR -7 498 1 706 299 30 37 chr4 68463165 68463433 -115825229 - L1MEd LINE L1 -3174 2955 2687 689 246 6 33 chr4 68463433 68463616 -115825046 + MER45A DNA AcHobo 1 178 0 706 299 30 37 chr4 68463616 68463908 -115824754 - L1MEd LINE L1 -3442 2687 2399 302 280 58 39 chr4 68463910 68464117 -115824545 + L1MEc LINE L1 1605 1815 -4581 11631 28 1 0 chr4 68464167 68466318 -115822344 + L1PA3 LINE L1 4000 6152 -3 683 298 26 26 chr4 68466443 68466795 -115821867 - L1MEd LINE L1 -4874 1245 894 427 198 11 0 chr4 68467565 68467656 -115821006 - MER53 DNA DNA -97 92 1 21 36 0 0 chr4 68467683 68467711 -115820951 + AT_rich Low_complexity Low_complexity 1 28 0 218 205 13 103 chr4 68467877 68467955 -115820707 - MIR SINE MIR -79 183 113 316 167 0 0 chr4 68467991 68468045 -115820617 + MER53 DNA DNA 1 54 -135 511 178 76 8 chr4 68468242 68468360 -115820302 + MER53 DNA DNA 64 189 0 23 0 0 0 chr4 68468477 68468500 -115820162 + AT_rich Low_complexity Low_complexity 1 23 0 306 300 67 0 chr4 68468600 68468720 -115819942 + MER94 DNA DNA 1 128 -6 26 0 0 0 chr4 68468861 68468887 -115819775 + AT_rich Low_complexity Low_complexity 1 26 0 183 289 0 22 chr4 68469127 68469172 -115819490 + L2 LINE L2 3219 3262 -51 29 28 0 0 chr4 68470551 68470587 -115818075 + AT_rich Low_complexity Low_complexity 1 36 0 2347 72 0 3 chr4 68473260 68473564 -115815098 + AluY SINE Alu 1 303 -8 587 308 45 27 chr4 68474372 68474596 -115814066 + MIR SINE MIR 24 251 -11 23 0 0 0 chr4 68475019 68475042 -115813620 + AT_rich Low_complexity Low_complexity 1 23 0 1839 128 48 3 chr4 68475051 68475340 -115813322 + AluJb SINE Alu 9 310 -2 22 80 0 0 chr4 68475695 68475745 -115812917 + AT_rich Low_complexity Low_complexity 1 50 0 413 339 31 0 chr4 68476032 68476162 -115812500 + L2 LINE L2 3134 3267 -5 520 269 54 21 chr4 68478032 68478218 -115810444 - MIR SINE MIR -48 214 23 270 213 49 0 chr4 68478378 68478439 -115810223 + MIR3 SINE MIR 94 157 -51 1302 283 100 23 chr4 68478991 68479818 -115808844 - L2 LINE L2 0 3272 2388 474 279 65 60 chr4 68479976 68480191 -115808471 - MIR SINE MIR -26 236 21 1989 164 0 0 chr4 68481457 68481769 -115806893 + AluSx SINE Alu 1 312 0 477 0 0 0 chr4 68481945 68481998 -115806664 + (TG)n Simple_repeat Simple_repeat 2 54 0 576 231 15 0 chr4 68482287 68482417 -115806245 - L1MB3 LINE L1 -1 6182 6051 259 264 161 32 chr4 68482431 68482586 -115806076 + MIR SINE MIR 46 220 -42 594 103 0 0 chr4 68483340 68483427 -115805235 + (TTCC)n Simple_repeat Simple_repeat 4 90 0 341 218 177 0 chr4 68483466 68483590 -115805072 - L1ME4a LINE L1 -30 6091 5946 645 254 16 16 chr4 68484281 68484470 -115804192 - MER5A DNA MER1_type 0 189 1 270 306 0 0 chr4 68486388 68486450 -115802212 - L2 LINE L2 0 3313 3252 1234 173 0 5 chr4 68486514 68486705 -115801957 + 7SLRNA srpRNA srpRNA 1 190 -130 597 184 19 0 chr4 68486866 68486969 -115801693 + 7SLRNA srpRNA srpRNA 205 309 -11 242 273 9 91 chr4 68488124 68488234 -115800428 + L2 LINE L2 3129 3229 -43 592 229 0 0 chr4 68488319 68488441 -115800221 + L1PB4 LINE L1 6035 6156 0 969 240 27 0 chr4 68489030 68489251 -115799411 - MIR SINE MIR -22 240 14 2392 123 8 16 chr4 68489658 68490025 -115798637 + THE1B LTR MaLR 1 364 0 185 306 16 0 chr4 68490043 68490105 -115798557 - MIR3 SINE MIR -14 194 132 405 252 64 45 chr4 68490580 68490747 -115797915 + MIR3 SINE MIR 13 182 -26 464 356 44 13 chr4 68492380 68492605 -115796057 + MIR SINE MIR 20 251 -11 270 299 136 23 chr4 68492882 68493096 -115795566 + MIR SINE MIR 11 248 -14 1565 170 16 55 chr4 68493531 68493842 -115794820 - AluJb SINE Alu -11 301 3 271 171 73 49 chr4 68493886 68493968 -115794694 - MIR SINE MIR -49 213 130 529 242 8 31 chr4 68494034 68494162 -115794500 - LTR16A1 LTR ERVL -332 125 1 249 233 54 93 chr4 68494162 68494291 -115794371 - MIR SINE MIR -116 146 23 201 274 0 0 chr4 68494857 68494908 -115793754 + CT-rich Low_complexity Low_complexity 2 52 0 198 281 24 37 chr4 68495184 68495266 -115793396 - MIR SINE MIR -6 256 176 25 0 0 0 chr4 68495521 68495546 -115793116 + AT_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chr4 68495797 68495839 -115792823 + AT_rich Low_complexity Low_complexity 1 42 0 370 325 17 8 chr4 68496338 68496455 -115792207 - L2 LINE L2 -8 3264 3147 215 377 8 23 chr4 68496665 68496795 -115791867 - L2 LINE L2 -27 3286 3159 180 326 35 0 chr4 68497539 68497625 -115791037 + MIR SINE MIR 163 251 -11 31 76 0 0 chr4 68497753 68497819 -115790843 + AT_rich Low_complexity Low_complexity 1 66 0 22 35 0 0 chr4 68498123 68498152 -115790510 + AT_rich Low_complexity Low_complexity 1 29 0 990 277 158 15 chr4 68498266 68498721 -115789941 + L2 LINE L2 1955 2474 -840 723 239 46 148 chr4 68498746 68499245 -115789417 + L2 LINE L2 2861 3308 -5 191 300 130 30 chr4 68499246 68499346 -115789316 - MIR SINE MIR -62 146 37 180 97 0 0 chr4 68499392 68499423 -115789239 + (TATG)n Simple_repeat Simple_repeat 2 32 0 324 233 39 29 chr4 68499437 68499540 -115789122 + L2 LINE L2 2266 2369 -945 1950 122 0 7 chr4 68499880 68500185 -115788477 + AluSx SINE Alu 7 309 0 577 299 48 0 chr4 68500377 68500584 -115788078 + MIR SINE MIR 5 221 -41 493 326 69 13 chr4 68500675 68500908 -115787754 + MIR SINE MIR 5 250 -12 507 123 0 0 chr4 68501034 68501115 -115787547 + (GGAA)n Simple_repeat Simple_repeat 1 81 0 29 60 0 0 chr4 68501488 68501538 -115787124 + AT_rich Low_complexity Low_complexity 1 50 0 290 357 117 24 chr4 68501900 68502113 -115786549 + MIR SINE MIR 20 252 -10 1295 226 113 15 chr4 68502330 68502666 -115785996 + MER4B-int LTR ERV1 3546 3914 -2844 3438 135 14 8 chr4 68502864 68503384 -115785278 - MER1A DNA MER1_type 0 527 5 189 193 18 88 chr4 68503725 68503782 -115784880 + L2 LINE L2 3177 3229 -84 263 250 0 15 chr4 68504300 68504368 -115784294 + CT-rich Low_complexity Low_complexity 4 70 0 27 62 0 0 chr4 68505953 68506001 -115782661 + AT_rich Low_complexity Low_complexity 1 48 0 255 298 8 58 chr4 68506345 68506466 -115782196 + L2 LINE L2 3195 3309 -4 289 309 98 8 chr4 68506556 68506679 -115781983 + MIR3 SINE MIR 68 201 -7 198 355 109 14 chr4 68509007 68509145 -115779517 + L2 LINE L2 3122 3272 0 2301 115 0 3 chr4 68510157 68510470 -115778192 + AluSq SINE Alu 1 312 -1 364 253 87 40 chr4 68510539 68510689 -115777973 - L1ME3A LINE L1 -89 6081 5925 458 277 0 0 chr4 68510725 68510862 -115777800 - L1ME3A LINE L1 -225 5945 5809 494 267 9 17 chr4 68510865 68510981 -115777681 + MIR SINE MIR 12 126 -136 461 270 114 42 chr4 68511024 68511431 -115777231 - LTR16A LTR ERVL -1 456 1 2304 79 3 3 chr4 68511566 68511857 -115776805 + AluY SINE Alu 1 291 -20 180 0 0 0 chr4 68511857 68511877 -115776785 + (TA)n Simple_repeat Simple_repeat 2 21 0 182 339 34 0 chr4 68512092 68512151 -115776511 + L2 LINE L2 3002 3062 -210 340 236 6 32 chr4 68512745 68512902 -115775760 + GA-rich Low_complexity Low_complexity 4 156 0 21 0 0 0 chr4 68513103 68513124 -115775538 + AT_rich Low_complexity Low_complexity 1 21 0 1752 168 24 3 chr4 68513165 68513463 -115775199 - AluSx SINE Alu -8 304 1 1763 124 4 11 chr4 68513641 68513914 -115774748 + L1PB3 LINE L1 5884 6154 0 2177 105 23 10 chr4 68514814 68515118 -115773544 + AluSg SINE Alu 3 310 0 207 0 0 0 chr4 68515431 68515454 -115773208 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3806 259 137 53 chr4 68516437 68517013 -115771649 + L2 LINE L2 948 1474 -1839 1082 178 9 33 chr4 68517013 68517226 -115771436 - MER3 DNA MER1_type 0 209 2 3806 259 137 53 chr4 68517226 68518594 -115770068 + L2 LINE L2 1474 3081 -232 387 246 117 6 chr4 68518973 68519152 -115769510 + MER20B DNA MER1_type 521 719 -64 188 35 35 0 chr4 68519154 68519183 -115769479 + (TATAA)n Simple_repeat Simple_repeat 2 31 0 196 255 0 20 chr4 68519258 68519309 -115769353 - MIR3 SINE MIR -48 160 111 252 328 121 0 chr4 68520190 68520306 -115768356 - L2 LINE L2 -5 3308 3179 25 0 0 0 chr4 68520821 68520846 -115767816 + AT_rich Low_complexity Low_complexity 1 25 0 5639 37 1 1 chr4 68520884 68521558 -115767104 - L1PA5 LINE L1 0 6154 5481 673 326 158 26 chr4 68522027 68522843 -115765819 + L2 LINE L2 1939 2862 -452 268 167 153 0 chr4 68523110 68523182 -115765480 + L1ME LINE L1 5602 5684 -486 12945 193 17 17 chr4 68523247 68526955 -115761707 - L1PA14 LINE L1 -10 6151 2443 23 0 0 0 chr4 68527037 68527060 -115761602 + AT_rich Low_complexity Low_complexity 1 23 0 542 311 202 12 chr4 68528223 68528363 -115760299 + L2 LINE L2 2523 2635 -678 209 57 29 0 chr4 68528363 68528398 -115760264 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 542 311 202 12 chr4 68528398 68528638 -115760024 + L2 LINE L2 2635 2987 -326 229 300 183 0 chr4 68528733 68528853 -115759809 + L2 LINE L2 3162 3303 -10 2474 168 51 6 chr4 68531063 68531593 -115757069 - L1MA8 LINE L1 0 6291 5738 1023 225 66 83 chr4 68531738 68532134 -115756528 + L2 LINE L2 2925 3313 0 947 221 195 32 chr4 68532957 68533332 -115755330 + MER110 LTR ERV1 18 453 -38 1888 190 15 20 chr4 68533655 68533679 -115754983 - MER57A LTR ERV1 0 403 380 2007 115 14 3 chr4 68533679 68533967 -115754695 - AluSx SINE Alu -19 293 3 1888 190 15 20 chr4 68533967 68534347 -115754315 - MER57A LTR ERV1 -23 380 1 403 280 0 25 chr4 68535270 68535388 -115753274 - MIR SINE MIR -91 171 57 271 212 162 0 chr4 68535513 68535612 -115753050 - MER103 DNA DNA -50 116 2 361 262 168 13 chr4 68536210 68536359 -115752303 + MIR SINE MIR 91 262 0 479 324 28 8 chr4 68536766 68537019 -115751643 - MIR SINE MIR -3 259 2 307 333 9 0 chr4 68537994 68538102 -115750560 - MIR SINE MIR -140 122 14 309 253 88 33 chr4 68538527 68538553 -115750109 - L1MC4 LINE L1 -1334 6708 6685 1077 140 0 0 chr4 68538553 68538731 -115749931 + (TA)n Simple_repeat Simple_repeat 1 178 0 309 253 88 33 chr4 68538731 68538795 -115749867 - L1MC4 LINE L1 -1357 6685 6613 2279 105 3 0 chr4 68538864 68539170 -115749492 - AluY SINE Alu -4 307 1 2091 134 3 10 chr4 68539611 68539925 -115748737 + AluSq SINE Alu 1 312 -1 619 268 130 13 chr4 68540638 68540877 -115747785 + MLT1L LTR MaLR 125 391 -224 197 236 18 36 chr4 68541046 68541101 -115747561 - MIR SINE MIR -187 75 22 7925 65 16 1 chr4 68541101 68542093 -115746569 + LTR13 LTR ERVK 1 1007 0 1189 123 29 5 chr4 68542093 68542297 -115746365 + HERVK13 LTR ERVK 1 209 -7907 366 243 9 0 chr4 68542288 68542395 -115746267 + HERVK13 LTR ERVK 727 834 -7282 * 560 184 44 29 chr4 68542727 68542863 -115745799 + HERVK13 LTR ERVK 1092 1229 -6887 528 236 0 0 chr4 68542939 68543066 -115745596 + HERVK13 LTR ERVK 3987 4113 -4003 11592 237 8 6 chr4 68543086 68546513 -115742149 + HERVK13 LTR ERVK 4572 8116 0 7936 64 18 1 chr4 68546513 68547503 -115741159 + LTR13 LTR ERVK 1 1007 0 372 284 174 7 chr4 68548276 68548431 -115740231 + MER5A DNA MER1_type 9 189 0 704 223 23 17 chr4 68548439 68548614 -115740048 - MER5B DNA MER1_type 0 178 3 554 314 47 21 chr4 68548837 68549073 -115739589 - MIR SINE MIR -4 258 17 618 344 41 5 chr4 68549860 68550078 -115738584 - MIR SINE MIR -21 241 16 209 220 0 20 chr4 68551456 68551506 -115737156 + (CATATA)n Simple_repeat Simple_repeat 3 51 0 328 175 0 0 chr4 68551662 68551725 -115736937 - MADE1 DNA Mariner -17 63 1 2053 202 18 0 chr4 68551879 68552341 -115736321 - MER90 LTR ERV1 -103 511 1 1870 121 3 98 chr4 68552733 68553079 -115735583 + AluSp SINE Alu 1 313 0 403 326 70 28 chr4 68553080 68553295 -115735367 + L1ME LINE L1 5566 5789 -332 416 268 65 0 chr4 68553349 68553487 -115735175 - LTR16A LTR ERVL -196 254 108 260 250 0 15 chr4 68553860 68553928 -115734734 - HERV16 LTR ERVL -300 4696 4630 258 356 39 36 chr4 68553992 68554301 -115734361 + ERVL LTR ERVL 4558 4867 -897 862 310 59 38 chr4 68554568 68555288 -115733374 - HERV16 LTR ERVL -2136 2860 2112 595 298 30 18 chr4 68555307 68555613 -115733049 - HERV16 LTR ERVL -3214 1782 1412 278 258 18 31 chr4 68555806 68555823 -115732839 - L1MA10 LINE L1 0 6334 6318 1607 227 18 43 chr4 68555823 68555955 -115732707 - L1ME1 LINE L1 -5 6161 6027 1986 81 0 37 chr4 68555955 68556257 -115732405 + AluY SINE Alu 18 309 0 1607 227 18 43 chr4 68556257 68556630 -115732032 - L1ME1 LINE L1 -139 6027 5668 1590 232 113 15 chr4 68556629 68557407 -115731255 - L1ME1 LINE L1 -715 5463 4610 * 603 239 8 0 chr4 68557524 68557654 -115731008 - MER94 DNA DNA -2 132 2 413 291 99 11 chr4 68558259 68558441 -115730221 + MIR SINE MIR 30 227 -35 297 0 0 0 chr4 68559086 68559119 -115729543 + (A)n Simple_repeat Simple_repeat 1 33 0 254 302 0 31 chr4 68559177 68559273 -115729389 + (CATTG)n Simple_repeat Simple_repeat 3 95 0 289 276 39 83 chr4 68559620 68559776 -115728886 + MER5A DNA MER1_type 8 156 -33 2245 187 63 7 chr4 68560169 68560628 -115728034 - L1MCa LINE L1 -5937 489 5 399 21 0 0 chr4 68562023 68562071 -115726591 + (TA)n Simple_repeat Simple_repeat 1 48 0 180 0 0 0 chr4 68562134 68562154 -115726508 + (TA)n Simple_repeat Simple_repeat 1 20 0 237 83 0 0 chr4 68562238 68562274 -115726388 + (G)n Simple_repeat Simple_repeat 1 36 0 43 0 0 0 chr4 68562640 68562683 -115725979 + AT_rich Low_complexity Low_complexity 1 43 0 309 305 52 17 chr4 68562683 68562857 -115725805 + L1M4 LINE L1 3047 3226 -2920 51 0 0 0 chr4 68562857 68562908 -115725754 + AT_rich Low_complexity Low_complexity 1 51 0 59 32 0 0 chr4 68563079 68563142 -115725520 + AT_rich Low_complexity Low_complexity 1 63 0 279 79 0 0 chr4 68563173 68563211 -115725451 + (T)n Simple_repeat Simple_repeat 1 38 0 308 264 44 0 chr4 68563246 68563337 -115725325 + L1MC4 LINE L1 6612 6706 -1336 628 172 0 106 chr4 68563457 68563608 -115725054 - MIR SINE MIR -25 237 103 260 293 61 49 chr4 68564612 68564776 -115723886 + L2 LINE L2 3127 3292 -21 183 80 0 0 chr4 68565191 68565216 -115723446 + (TAGA)n Simple_repeat Simple_repeat 2 26 0 409 320 117 22 chr4 68565462 68565684 -115722978 - MIR SINE MIR 0 262 20 185 262 294 8 chr4 68565962 68566088 -115722574 - MIR SINE MIR -3 259 98 221 354 35 7 chr4 68566092 68566236 -115722426 + L2 LINE L2 2128 2275 -1039 3683 184 82 37 chr4 68566242 68567274 -115721388 - Charlie1 DNA MER1_type -4 2757 1679 357 304 23 5 chr4 68567285 68567502 -115721160 + L1M4 LINE L1 4377 4597 -1549 3710 222 43 25 chr4 68567511 68568752 -115719910 + L1MA3 LINE L1 11 1624 -5941 * 7915 135 52 7 chr4 68568750 68569306 -115719356 + L1MA3 LINE L1 2151 2681 -4884 396 0 0 0 chr4 68569306 68569350 -115719312 + (CA)n Simple_repeat Simple_repeat 2 45 0 7915 135 52 7 chr4 68569350 68570337 -115718325 + L1MA3 LINE L1 2681 3763 -3802 472 194 88 0 chr4 68570391 68570551 -115718111 - L1 LINE L1 -2865 3281 3108 286 73 18 18 chr4 68570551 68570606 -115718056 + (TA)n Simple_repeat Simple_repeat 2 56 0 12182 182 40 17 chr4 68570615 68571897 -115716765 + L1MA3 LINE L1 3785 5036 -2688 246 32 0 0 chr4 68571897 68571928 -115716734 + (CA)n Simple_repeat Simple_repeat 2 32 0 12182 182 40 17 chr4 68571928 68574490 -115714172 + L1MA3 LINE L1 5036 7724 0 675 292 22 0 chr4 68574529 68574803 -115713859 + L1M4 LINE L1 4614 4893 -1253 4812 132 7 26 chr4 68575386 68576209 -115712453 - L1PB3 LINE L1 0 6154 5347 324 0 0 0 chr4 68576309 68576345 -115712317 + (TTTC)n Simple_repeat Simple_repeat 4 39 0 8537 218 48 18 chr4 68576345 68581969 -115706693 - L1PBa LINE L1 -1993 4869 3 26 30 0 0 chr4 68582016 68582049 -115706613 + AT_rich Low_complexity Low_complexity 1 33 0 25 31 0 0 chr4 68582352 68582384 -115706278 + AT_rich Low_complexity Low_complexity 1 32 0 213 65 0 0 chr4 68582425 68582456 -115706206 + (TG)n Simple_repeat Simple_repeat 2 32 0 2953 233 62 3 chr4 68582503 68583161 -115705501 + L1MA9 LINE L1 13 709 -6459 * 4184 211 39 45 chr4 68583150 68583482 -115705180 + L1MA9 LINE L1 3880 4213 -2954 4806 75 1 11 chr4 68583482 68584134 -115704528 + L1PA8A LINE L1 5485 6130 -1 4184 211 39 45 chr4 68584134 68585064 -115703598 + L1MA9 LINE L1 4213 5134 -2033 180 111 0 0 chr4 68585101 68585128 -115703534 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 4738 186 45 29 chr4 68585128 68587087 -115701575 + L1MA9 LINE L1 5304 7295 -38 22 56 0 0 chr4 68587653 68587689 -115700973 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr4 68587938 68587960 -115700702 + AT_rich Low_complexity Low_complexity 1 22 0 816 325 82 54 chr4 68588473 68589376 -115699286 - L2 LINE L2 -15 3298 2407 378 285 67 64 chr4 68589419 68589809 -115698853 + L1MC4a LINE L1 4942 5332 -814 22 0 0 0 chr4 68589843 68589865 -115698797 + AT_rich Low_complexity Low_complexity 1 22 0 301 350 118 31 chr4 68589982 68590305 -115698357 + L1MC4a LINE L1 5600 5950 -1858 22 70 0 0 chr4 68590415 68590458 -115698204 + AT_rich Low_complexity Low_complexity 1 43 0 1770 132 69 21 chr4 68591019 68591308 -115697354 - AluJb SINE Alu -9 303 1 333 0 0 0 chr4 68591576 68591613 -115697049 + (TG)n Simple_repeat Simple_repeat 2 38 0 222 366 67 21 chr4 68591778 68591942 -115696720 + MER5B DNA MER1_type 7 189 0 402 273 80 33 chr4 68593169 68593319 -115695343 + MIR SINE MIR 17 173 -89 414 0 0 0 chr4 68594566 68594612 -115694050 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 222 125 25 0 chr4 68594719 68594759 -115693903 + GA-rich Low_complexity Low_complexity 2 42 0 387 0 0 0 chr4 68596645 68596688 -115691974 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 239 323 0 0 chr4 68596791 68596856 -115691806 + L2 LINE L2 3200 3264 -8 1233 158 0 0 chr4 68597708 68597898 -115690764 - AluSg/x SINE Alu 0 312 123 1321 181 12 12 chr4 68598395 68598638 -115690024 - MLT1A1 LTR MaLR -122 243 1 1138 268 176 35 chr4 68598639 68599293 -115689369 - L2 LINE L2 -672 2642 1897 192 77 0 0 chr4 68600416 68600442 -115688220 + (A)n Simple_repeat Simple_repeat 1 26 0 1750 277 148 22 chr4 68601998 68602872 -115685790 - L2 LINE L2 -4 3309 2329 204 275 42 21 chr4 68602886 68603008 -115685654 + MER5A DNA MER1_type 7 184 -5 199 155 0 52 chr4 68604833 68604891 -115683771 + GA-rich Low_complexity Low_complexity 1 55 0 805 134 0 37 chr4 68604895 68605082 -115683580 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 831 181 78 0 chr4 68605129 68605295 -115683367 - MER5A DNA MER1_type -8 181 3 233 346 73 39 chr4 68605369 68605793 -115682869 - L2 LINE L2 -241 3072 2637 3718 157 0 0 chr4 68606365 68606945 -115681717 - L1PA16 LINE L1 -62 6104 5525 1303 90 25 0 chr4 68606940 68607140 -115681522 + L1PA16 LINE L1 5320 5524 -642 * 2409 102 0 0 chr4 68607702 68608015 -115680647 + AluSq SINE Alu 1 313 0 1909 82 12 4 chr4 68608381 68608673 -115679989 - AluY SINE Alu 0 321 28 21 0 0 0 chr4 68609142 68609163 -115679499 + AT_rich Low_complexity Low_complexity 1 21 0 2413 84 0 0 chr4 68609776 68610086 -115678576 - AluY SINE Alu -1 310 1 275 347 85 25 chr4 68610557 68610756 -115677906 + L2 LINE L2 2616 2826 -488 888 251 0 0 chr4 68611465 68611644 -115677018 - MER58A DNA MER1_type -4 220 42 378 239 0 71 chr4 68612294 68612407 -115676255 - L2 LINE L2 0 3313 3209 1422 256 95 4 chr4 68612586 68613240 -115675422 - L2 LINE L2 -5 3308 2592 249 269 117 6 chr4 68613647 68613783 -115674879 - MIR SINE MIR -61 147 46 22 0 0 0 chr4 68614155 68614177 -115674485 + AT_rich Low_complexity Low_complexity 1 22 0 198 167 0 0 chr4 68614292 68614328 -115674334 + (CA)n Simple_repeat Simple_repeat 1 36 0 294 287 87 0 chr4 68614528 68614643 -115674019 + L1ME LINE L1 5667 5791 -330 21 36 0 0 chr4 68614706 68614734 -115673928 + AT_rich Low_complexity Low_complexity 1 28 0 6754 161 16 2 chr4 68614769 68616742 -115671920 - L1PA13 LINE L1 -4 6159 4157 22 0 0 0 chr4 68617186 68617208 -115671454 + AT_rich Low_complexity Low_complexity 1 22 0 1966 141 3 16 chr4 68617394 68617698 -115670964 + AluSx SINE Alu 1 300 -12 27 62 0 0 chr4 68617699 68617747 -115670915 + AT_rich Low_complexity Low_complexity 1 48 0 411 241 0 0 chr4 68617910 68617989 -115670673 - L2 LINE L2 -4 3309 3231 507 310 32 6 chr4 68618322 68618480 -115670182 - MIR SINE MIR -93 169 8 2362 78 14 0 chr4 68619577 68619872 -115668790 + AluSx SINE Alu 1 299 -13 235 336 16 16 chr4 68619901 68620026 -115668636 - MIR SINE MIR -135 127 3 399 345 36 73 chr4 68620769 68621070 -115667592 + L2 LINE L2 2952 3241 -31 803 176 34 34 chr4 68621606 68621811 -115666851 - L1MA6 LINE L1 0 6300 6096 194 267 0 33 chr4 68623741 68623801 -115664861 + MIR SINE MIR 159 216 -46 363 127 0 0 chr4 68624062 68624125 -115664537 + (ATG)n Simple_repeat Simple_repeat 2 64 0 671 244 24 18 chr4 68624144 68624312 -115664350 - MIR SINE MIR -16 246 78 21 36 0 0 chr4 68624795 68624823 -115663839 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 68625165 68625193 -115663469 + AT_rich Low_complexity Low_complexity 1 28 0 29 28 0 0 chr4 68625256 68625292 -115663370 + AT_rich Low_complexity Low_complexity 1 36 0 1360 25 6 0 chr4 68626893 68627053 -115661609 + L1PA3 LINE L1 5992 6152 -3 23 0 0 0 chr4 68627053 68627076 -115661586 + AT_rich Low_complexity Low_complexity 1 23 0 311 364 76 0 chr4 68627076 68627208 -115661454 + MIR3 SINE MIR 52 193 -15 653 311 12 58 chr4 68627822 68628079 -115660583 - MIR SINE MIR -8 254 10 213 328 7 5 chr4 68628970 68629124 -115659538 + MIR SINE MIR 2 230 -32 266 250 65 137 chr4 68629599 68629767 -115658895 - MIR3 SINE MIR -28 180 25 218 214 36 0 chr4 68630030 68630086 -115658576 + (TG)n Simple_repeat Simple_repeat 2 59 0 203 240 0 40 chr4 68630408 68630483 -115658179 + A-rich Low_complexity Low_complexity 3 74 0 21 0 0 0 chr4 68630552 68630573 -115658089 + AT_rich Low_complexity Low_complexity 1 21 0 7696 17 0 0 chr4 68631857 68633031 -115655631 + L1PA3 LINE L1 4999 6172 0 538 347 122 13 chr4 68633362 68633812 -115654850 + L1MC4a LINE L1 5408 5906 -1902 1963 107 89 11 chr4 68633975 68634256 -115654406 + AluSx SINE Alu 2 304 -8 216 333 184 9 chr4 68634967 68635081 -115653581 - MER5A DNA MER1_type 0 189 56 22 35 0 0 chr4 68635089 68635118 -115653544 + AT_rich Low_complexity Low_complexity 1 29 0 393 264 139 0 chr4 68635704 68635833 -115652829 - L2 LINE L2 -773 2541 2395 346 191 9 45 chr4 68638235 68638345 -115650317 - LTR41 LTR ERVL -6 767 662 876 214 50 53 chr4 68638868 68639149 -115649513 - LTR41 LTR ERVL -491 282 3 322 234 135 113 chr4 68639249 68639483 -115649179 + L1ME4a LINE L1 5512 5739 -382 2159 101 3 3 chr4 68639483 68639779 -115648883 + AluSx SINE Alu 1 296 -16 322 234 135 113 chr4 68639779 68640137 -115648525 + L1ME4a LINE L1 5739 6117 -4 2439 191 75 33 chr4 68640257 68640364 -115648298 + MLT1F1 LTR MaLR 1 102 -465 1004 83 35 6 chr4 68640364 68640533 -115648129 - L1MA7 LINE L1 0 6291 6118 2439 191 75 33 chr4 68640533 68640969 -115647693 + MLT1F1 LTR MaLR 102 567 0 28 29 0 0 chr4 68641097 68641132 -115647530 + AT_rich Low_complexity Low_complexity 1 35 0 222 323 0 0 chr4 68641170 68641232 -115647430 + L2 LINE L2 3252 3313 0 180 125 0 0 chr4 68641232 68641264 -115647398 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 24 32 0 0 chr4 68641333 68641364 -115647298 + AT_rich Low_complexity Low_complexity 1 31 0 310 86 186 43 chr4 68641654 68641724 -115646938 + MER116 DNA Mariner 1 80 0 447 331 84 0 chr4 68641748 68641914 -115646748 - MIR SINE MIR -72 190 11 335 242 142 8 chr4 68641964 68642084 -115646578 + MIR SINE MIR 123 258 -4 240 292 0 46 chr4 68642469 68642534 -115646128 + L2 LINE L2 3203 3264 -8 19339 148 40 55 chr4 68643541 68643631 -115645031 + L1M1 LINE L1 15 105 -7460 207 0 0 0 chr4 68643631 68643654 -115645008 + (CA)n Simple_repeat Simple_repeat 2 24 0 19339 148 40 55 chr4 68643654 68645855 -115642807 + L1M1 LINE L1 105 2361 -5204 995 40 0 0 chr4 68645855 68645981 -115642681 + AluY SINE Alu 186 311 0 19339 148 40 55 chr4 68645981 68647235 -115641427 + L1M1 LINE L1 2361 3632 -3933 4286 224 35 10 chr4 68647675 68648817 -115639845 - L1 LINE L1 -824 5322 4152 737 110 8 0 chr4 68648818 68648945 -115639717 + (TTTCC)n Simple_repeat Simple_repeat 2 129 0 7403 152 38 5 chr4 68649324 68650811 -115637851 - L1M1 LINE L1 -743 5403 3928 449 254 8 0 chr4 68650924 68651042 -115637620 + L1M1 LINE L1 3636 3754 -3811 5055 213 19 9 chr4 68651054 68652287 -115636375 + L1M1 LINE L1 4095 5340 -2225 3948 114 53 12 chr4 68652392 68653065 -115635597 + L1MA3 LINE L1 5504 6204 -101 2088 115 3 3 chr4 68653260 68653556 -115635106 + AluSx SINE Alu 1 296 -16 342 0 0 0 chr4 68653900 68653938 -115634724 + (CA)n Simple_repeat Simple_repeat 2 39 0 217 332 81 71 chr4 68654008 68654219 -115634443 - L3b LINE CR1 -48 1535 1323 332 263 113 44 chr4 68654580 68654740 -115633922 - L3 LINE CR1 -319 1258 1088 287 73 0 0 chr4 68655859 68655900 -115632762 - U3 snRNA snRNA -176 41 1 417 297 187 45 chr4 68656339 68656649 -115632013 - L3 LINE CR1 -486 1091 738 2059 87 7 0 chr4 68657429 68657716 -115630946 - L1PA7 LINE L1 -1 6153 5865 898 204 16 31 chr4 68657924 68658115 -115630547 + MER5A DNA MER1_type 2 189 0 43871 42 1 1 chr4 68658347 68664500 -115624162 - L1PA3 LINE L1 -3 6152 1 703 245 78 25 chr4 68664819 68665023 -115623639 - MER58A DNA MER1_type 0 224 10 249 83 0 0 chr4 68667519 68667555 -115621107 + (TG)n Simple_repeat Simple_repeat 1 36 0 11801 122 29 35 chr4 68667614 68670867 -115617795 - L1P3 LINE L1 -3083 3378 1 279 0 0 0 chr4 68671209 68671240 -115617422 + (TA)n Simple_repeat Simple_repeat 2 32 0 317 167 67 44 chr4 68671402 68671492 -115617170 - L1MC4 LINE L1 -1339 6703 6612 473 102 16 67 chr4 68671495 68671753 -115616909 + (TA)n Simple_repeat Simple_repeat 1 244 0 293 221 67 10 chr4 68671755 68671859 -115616803 + L1ME4a LINE L1 5994 6103 -18 30 0 0 0 chr4 68671864 68671894 -115616768 + AT_rich Low_complexity Low_complexity 1 30 0 485 305 99 14 chr4 68672417 68672630 -115616032 + MIR SINE MIR 20 250 -12 608 312 125 38 chr4 68673323 68673875 -115614787 + L2 LINE L2 110 709 -2605 1132 124 0 6 chr4 68674026 68674187 -115614475 - AluSg/x SINE Alu -23 289 130 346 319 88 40 chr4 68674587 68674714 -115613948 - L2 LINE L2 -46 3226 3107 2861 191 52 53 chr4 68674714 68675425 -115613237 + MER67C LTR ERV1 1 710 0 346 319 88 40 chr4 68675425 68675548 -115613114 - L2 LINE L2 -165 3107 2964 373 345 17 40 chr4 68675650 68675827 -115612835 - L2 LINE L2 -592 2722 2550 896 174 51 11 chr4 68675972 68676150 -115612512 + MER5A DNA MER1_type 2 186 -3 352 275 108 24 chr4 68677822 68677989 -115610673 + MIR SINE MIR 32 212 -50 2227 62 0 4 chr4 68678013 68678286 -115610376 + AluY SINE Alu 27 298 -13 288 329 28 35 chr4 68679086 68679124 -115609538 - MIR3 SINE MIR -61 147 110 1765 201 0 0 chr4 68679124 68679428 -115609234 - AluJb SINE Alu -8 304 1 288 329 28 35 chr4 68679428 68679532 -115609130 - MIR3 SINE MIR -98 110 6 461 306 32 19 chr4 68679762 68679919 -115608743 - MIR3 SINE MIR -28 180 22 428 249 227 31 chr4 68680398 68680623 -115608039 + MER102a DNA MER1_type 61 329 -1 188 282 28 28 chr4 68682007 68682078 -115606584 - L2 LINE L2 -1017 2297 2227 283 62 0 16 chr4 68682150 68682199 -115606463 + L1PA12 LINE L1 6129 6174 0 552 110 0 30 chr4 68682982 68683082 -115605580 + L1P LINE L1 5262 5358 -805 2029 122 0 50 chr4 68683946 68684265 -115604397 + AluSx SINE Alu 1 303 -9 64 14 0 0 chr4 68684417 68684488 -115604174 + AT_rich Low_complexity Low_complexity 1 71 0 216 0 0 0 chr4 68684855 68684879 -115603783 + (A)n Simple_repeat Simple_repeat 1 24 0 797 267 129 47 chr4 68685468 68686018 -115602644 + MLT1G1 LTR MaLR 1 595 0 398 266 11 0 chr4 68686112 68686206 -115602456 - MER5A DNA MER1_type -84 105 11 622 290 131 35 chr4 68687012 68687302 -115601360 + MLT1J2 LTR MaLR 4 321 -129 2390 230 25 24 chr4 68687307 68687895 -115600767 - MER76 LTR ERV -4 684 96 385 253 11 11 chr4 68688007 68688102 -115600560 + MLT1I LTR MaLR 305 399 -10 878 332 50 16 chr4 68688779 68689143 -115599519 + MLT1I LTR MaLR 24 399 -10 17501 159 24 34 chr4 68689623 68691878 -115596784 + L1M1 LINE L1 50 2326 -5239 1809 174 3 3 chr4 68691878 68692177 -115596485 + AluSx SINE Alu 1 299 -13 17501 159 24 34 chr4 68692177 68692197 -115596465 + L1M1 LINE L1 2326 2345 -5220 1649 171 10 48 chr4 68692197 68692507 -115596155 + AluJb SINE Alu 1 298 -14 17501 159 24 34 chr4 68692507 68693396 -115595266 + L1M1 LINE L1 2345 3183 -4382 1063 198 5 0 chr4 68693400 68693597 -115595065 + L1PBa LINE L1 3 200 -6663 11300 123 186 9 chr4 68693599 68695776 -115592886 + L1PBa LINE L1 636 3205 -3657 26422 132 12 110 chr4 68695816 68702815 -115585847 + L1MA3 LINE L1 11 6305 0 2107 110 0 20 chr4 68703157 68703456 -115585206 - AluSp SINE Alu -18 295 3 1169 221 22 0 chr4 68704022 68704253 -115584409 + AluJo SINE Alu 4 239 -73 1687 170 9 77 chr4 68704797 68705188 -115583474 + MLT1A1 LTR MaLR 1 457 0 488 268 58 83 chr4 68705753 68705896 -115582766 + MIR SINE MIR 48 186 -76 1333 216 12 41 chr4 68705896 68706216 -115582446 + AluJo SINE Alu 1 311 -1 488 268 58 83 chr4 68706216 68706277 -115582385 + MIR SINE MIR 186 247 -15 272 256 77 0 chr4 68707518 68707596 -115581066 + MIR3 SINE MIR 88 171 -37 432 293 0 8 chr4 68707993 68708116 -115580546 - MER117 DNA MER1_type -47 150 29 247 350 150 0 chr4 68708617 68708737 -115579925 - L3 LINE CR1 -156 1421 1284 283 322 100 26 chr4 68709124 68709335 -115579327 - MIR SINE MIR -23 239 12 260 278 206 24 chr4 68709377 68709503 -115579159 + L2 LINE L2 3165 3313 0 269 108 0 0 chr4 68709885 68709922 -115578740 + L1PA16 LINE L1 4703 4739 -1407 1453 124 22 0 chr4 68709936 68710162 -115578500 + L1PA16 LINE L1 5927 6157 -9 28 0 0 0 chr4 68710162 68710190 -115578472 + AT_rich Low_complexity Low_complexity 1 28 0 233 137 60 34 chr4 68710199 68710316 -115578346 + (TTATA)n Simple_repeat Simple_repeat 5 124 0 737 325 24 0 chr4 68710331 68710540 -115578122 + MIR SINE MIR 32 245 -17 1837 131 3 0 chr4 68713235 68713533 -115575129 + L1MA4 LINE L1 5997 6295 -5 21 36 0 0 chr4 68713722 68713750 -115574912 + AT_rich Low_complexity Low_complexity 1 28 0 212 203 0 62 chr4 68713838 68713902 -115574760 + (AATAG)n Simple_repeat Simple_repeat 4 63 0 23 33 0 0 chr4 68715477 68715507 -115573155 + AT_rich Low_complexity Low_complexity 1 30 0 1594 169 32 4 chr4 68716203 68716482 -115572180 + AluJb SINE Alu 1 287 -25 267 103 0 0 chr4 68716486 68716525 -115572137 + (TAA)n Simple_repeat Simple_repeat 1 39 0 27 29 0 0 chr4 68717289 68717323 -115571339 + AT_rich Low_complexity Low_complexity 1 34 0 295 275 25 0 chr4 68717460 68717540 -115571122 - MIR SINE MIR -110 152 71 433 294 27 49 chr4 68717615 68717799 -115570863 + L3 LINE CR1 1242 1421 -156 588 308 66 39 chr4 68718004 68718547 -115570115 + L1ME4a LINE L1 5296 5853 -268 601 201 195 0 chr4 68718557 68718721 -115569941 + MLT1D LTR MaLR 306 501 -4 225 277 54 101 chr4 68720067 68720284 -115568378 - MIR SINE MIR -8 254 41 216 0 0 0 chr4 68720694 68720718 -115567944 + (CA)n Simple_repeat Simple_repeat 2 25 0 701 245 91 17 chr4 68721019 68721260 -115567402 + MIR SINE MIR 4 262 0 338 358 87 5 chr4 68721266 68721473 -115567189 + L2 LINE L2 2241 2464 -850 1078 70 21 0 chr4 68721964 68722106 -115566556 - AluSg/x SINE Alu -9 300 156 199 310 181 17 chr4 68722115 68722231 -115566431 - MIR SINE MIR -108 154 20 709 268 52 16 chr4 68722251 68722501 -115566161 + MIR SINE MIR 4 262 0 183 220 0 20 chr4 68723311 68723361 -115565301 + L2 LINE L2 3264 3312 -1 186 333 10 20 chr4 68723682 68723781 -115564881 + L2 LINE L2 2859 2956 -316 1670 80 0 13 chr4 68724140 68724364 -115564298 + AluY SINE Alu 84 304 -7 587 207 84 67 chr4 68724562 68724741 -115563921 - FRAM SINE Alu -2 174 1 1476 117 27 43 chr4 68724776 68725032 -115563630 - L1PA8 LINE L1 -9 6163 5912 1140 172 71 34 chr4 68725103 68725403 -115563259 + L1MA8 LINE L1 5974 6290 -13 276 221 0 0 chr4 68725379 68725447 -115563215 + L1MA8 LINE L1 6217 6284 -7 * 317 148 28 93 chr4 68725452 68725560 -115563102 + GA-rich Low_complexity Low_complexity 2 102 0 458 298 12 25 chr4 68726427 68726588 -115562074 - MER117 DNA MER1_type -30 167 9 245 120 40 0 chr4 68727872 68727922 -115560740 + GA-rich Low_complexity Low_complexity 4 55 0 264 235 235 0 chr4 68728506 68728587 -115560075 + L2 LINE L2 3172 3271 -1 871 169 11 0 chr4 68729037 68729214 -115559448 + CT-rich Low_complexity Low_complexity 1 179 0 527 239 8 0 chr4 68729232 68729349 -115559313 - FLAM_A SINE Alu -9 133 16 1959 131 7 7 chr4 68729935 68730333 -115558329 + AluSx SINE Alu 1 398 0 222 360 65 7 chr4 68731734 68731873 -115556789 - L2 LINE L2 -453 2861 2715 240 228 35 18 chr4 68732264 68732321 -115556341 - MER91 DNA MER1_type 0 190 133 408 145 0 0 chr4 68733310 68733379 -115555283 + L1MA9 LINE L1 5616 5684 -628 279 73 0 0 chr4 68733377 68733418 -115555244 + L1MA3 LINE L1 6265 6305 0 * 2605 193 45 16 chr4 68733429 68733537 -115555125 + L1MA9 LINE L1 5675 5778 -534 231 36 0 0 chr4 68733537 68733565 -115555097 + (CA)n Simple_repeat Simple_repeat 1 28 0 2605 193 45 16 chr4 68733565 68733937 -115554725 + L1MA9 LINE L1 5778 6177 -135 1960 125 34 3 chr4 68733937 68734232 -115554430 + AluSx SINE Alu 1 304 -8 2605 193 45 16 chr4 68734232 68734331 -115554331 + L1MA9 LINE L1 6177 6272 -40 1967 144 7 0 chr4 68734331 68734630 -115554032 - AluSg SINE Alu -9 301 1 699 248 99 16 chr4 68734671 68734994 -115553668 + L1MC4 LINE L1 6984 7333 -709 207 0 0 0 chr4 68735727 68735750 -115552912 + (CATA)n Simple_repeat Simple_repeat 2 24 0 414 296 119 32 chr4 68736136 68736389 -115552273 - LTR16C LTR ERVL -2 489 215 15841 205 24 22 chr4 68736784 68738025 -115550637 + L1PA13 LINE L1 1 1238 -5559 2068 127 27 0 chr4 68738025 68738324 -115550338 + AluSx SINE Alu 1 307 -5 15841 205 24 22 chr4 68738324 68738439 -115550223 + L1PA13 LINE L1 1238 1351 -5446 1719 134 45 58 chr4 68738439 68738819 -115549843 + THE1C LTR MaLR 1 375 0 9759 109 50 40 chr4 68738819 68740383 -115548279 + THE1C-int LTR MaLR 1 1580 0 1889 155 24 29 chr4 68740385 68740760 -115547902 + THE1C LTR MaLR 3 375 0 15841 205 24 22 chr4 68740760 68744733 -115543929 + L1PA13 LINE L1 1351 5346 -1451 5612 115 22 28 chr4 68744734 68746070 -115542592 + L1PA13 LINE L1 5458 6806 -8 21 0 0 0 chr4 68746070 68746091 -115542571 + AT_rich Low_complexity Low_complexity 1 21 0 1902 114 17 45 chr4 68746815 68747173 -115541489 + L1PA13 LINE L1 5808 6155 -8 22 0 0 0 chr4 68747173 68747195 -115541467 + AT_rich Low_complexity Low_complexity 1 22 0 1965 264 89 34 chr4 68747304 68748319 -115540343 + L1MC4a LINE L1 5254 6324 -1484 4360 168 100 21 chr4 68748364 68750058 -115538604 - L1MA7 LINE L1 -5 7705 5872 5306 218 61 37 chr4 68750123 68751968 -115536694 - L1MA7 LINE L1 -2499 5066 3176 1959 115 27 24 chr4 68751968 68752263 -115536399 - AluSg SINE Alu -14 296 1 5306 218 61 37 chr4 68752263 68752391 -115536271 - L1MA7 LINE L1 -4389 3176 3053 1044 194 10 10 chr4 68752391 68752597 -115536065 - MER65A LTR ERV1 -239 206 1 1463 309 30 58 chr4 68752597 68753202 -115535460 - L1MA7 LINE L1 -5036 2460 1873 1095 195 18 14 chr4 68753207 68753484 -115535178 - L1M1 LINE L1 -4621 2944 2667 * 3009 250 52 5 chr4 68753475 68754407 -115534255 - L1M4 LINE L1 -1419 4727 3753 401 313 30 15 chr4 68754423 68754554 -115534108 + MER58C DNA MER1_type 1 133 -82 975 127 0 17 chr4 68754573 68754754 -115533908 + (GAA)n Simple_repeat Simple_repeat 1 178 0 640 130 14 27 chr4 68754756 68754902 -115533760 + G-rich Low_complexity Low_complexity 6 149 0 377 203 43 0 chr4 68754910 68754979 -115533683 + MER58C DNA MER1_type 144 215 0 1311 258 57 29 chr4 68754979 68755847 -115532815 - L1M4 LINE L1 -2427 3719 2801 2162 24 0 0 chr4 68755965 68756215 -115532447 - L1PA5 LINE L1 -283 5871 5622 263 82 0 41 chr4 68756209 68756292 -115532370 + L1PA4 LINE L1 6108 6155 0 * 639 112 0 0 chr4 68756592 68756690 -115531972 + (CA)n Simple_repeat Simple_repeat 2 99 0 2643 267 158 16 chr4 68756865 68758106 -115530556 - L2 LINE L2 -12 3301 1876 2227 117 3 0 chr4 68758183 68758490 -115530172 + AluSg SINE Alu 1 308 -2 644 223 15 0 chr4 68758810 68758940 -115529722 + FLAM_A SINE Alu 1 132 -1 214 316 0 0 chr4 68759606 68759663 -115528999 + L2 LINE L2 3252 3308 -5 682 128 8 0 chr4 68761304 68761421 -115527241 + L1MA9 LINE L1 6195 6312 0 38 39 0 0 chr4 68761721 68761773 -115526889 + AT_rich Low_complexity Low_complexity 1 52 0 347 402 27 8 chr4 68764028 68764284 -115524378 - MIR SINE MIR 0 262 2 303 56 0 0 chr4 68766165 68766201 -115522461 - U2 snRNA snRNA -152 36 1 874 301 65 24 chr4 68766778 68767147 -115521515 - L2 LINE L2 0 3313 2930 212 376 24 0 chr4 68767435 68767520 -115521142 - L3 LINE CR1 -2 1575 1489 214 228 26 18 chr4 68768470 68768584 -115520078 + GA-rich Low_complexity Low_complexity 3 117 0 212 376 24 0 chr4 68768710 68768795 -115519867 - L3 LINE CR1 -2 1575 1489 411 231 120 9 chr4 68770108 68770216 -115518446 - L2 LINE L2 0 3272 3153 300 288 136 40 chr4 68770213 68770338 -115518324 + L2 LINE L2 3136 3272 0 * 208 289 96 10 chr4 68772913 68773017 -115515645 + MIR SINE MIR 108 220 -42 198 150 0 0 chr4 68773089 68773129 -115515533 + (TTTC)n Simple_repeat Simple_repeat 2 41 0 250 261 29 0 chr4 68774032 68774101 -115514561 + MIR SINE MIR 75 145 -117 2624 26 0 7 chr4 68774203 68774508 -115514154 - AluY SINE Alu -8 303 1 1368 133 5 0 chr4 68775525 68775743 -115512919 + L1PA10 LINE L1 5950 6168 0 212 133 44 0 chr4 68775829 68775874 -115512788 + (CATA)n Simple_repeat Simple_repeat 3 49 0 33 66 0 0 chr4 68775934 68775995 -115512667 + AT_rich Low_complexity Low_complexity 1 61 0 298 319 170 22 chr4 68776411 68776593 -115512069 - L3 LINE CR1 -7 1570 1362 429 191 88 29 chr4 68776596 68776732 -115511930 - MER53 DNA DNA -45 144 1 522 332 96 0 chr4 68776768 68776955 -115511707 + MIR SINE MIR 1 205 -57 187 288 30 15 chr4 68777071 68777137 -115511525 + MIR SINE MIR 196 262 0 373 231 44 11 chr4 68777162 68777253 -115511409 - MIR SINE MIR -93 169 76 447 314 111 18 chr4 68777294 68777520 -115511142 - L3 LINE CR1 -225 1352 1106 275 331 96 6 chr4 68778718 68778875 -115509787 - MIR3 SINE MIR -6 202 32 207 167 0 0 chr4 68779127 68779169 -115509493 + (TA)n Simple_repeat Simple_repeat 1 42 0 24 0 0 0 chr4 68779379 68779403 -115509259 + AT_rich Low_complexity Low_complexity 1 24 0 876 214 6 22 chr4 68780386 68780564 -115508098 + MER5B DNA MER1_type 1 175 -3 572 223 50 67 chr4 68780580 68780862 -115507800 + L1ME4a LINE L1 5769 6045 -76 260 258 30 0 chr4 68781413 68781479 -115507183 + L2 LINE L2 3203 3270 -2 252 161 0 0 chr4 68781597 68781659 -115507003 + (TA)n Simple_repeat Simple_repeat 2 63 0 181 219 0 0 chr4 68781724 68781756 -115506906 + L2 LINE L2 3222 3253 -19 662 248 87 8 chr4 68782027 68782269 -115506393 + MIR SINE MIR 2 262 0 569 359 52 25 chr4 68782270 68782632 -115506030 - L2 LINE L2 -4 3268 2897 229 310 70 10 chr4 68782835 68782935 -115505727 - L2 LINE L2 -652 2662 2557 335 195 13 26 chr4 68782999 68783076 -115505586 - MER94 DNA DNA -17 117 42 405 304 20 7 chr4 68783198 68783346 -115505316 - L2 LINE L2 -979 2335 2186 192 297 188 12 chr4 68783647 68783812 -115504850 + MIR SINE MIR 69 262 0 978 224 98 78 chr4 68785838 68786196 -115502466 - MLT1A1 LTR MaLR 0 365 1 1689 214 19 37 chr4 68786275 68786653 -115502009 + MLT1A2 LTR MaLR 1 371 -3 333 0 0 0 chr4 68786653 68786690 -115501972 + (CA)n Simple_repeat Simple_repeat 2 38 0 217 385 59 22 chr4 68788339 68788474 -115500188 - L2 LINE L2 0 3272 3133 25 75 0 0 chr4 68788556 68788609 -115500053 + AT_rich Low_complexity Low_complexity 1 53 0 202 329 73 0 chr4 68789099 68789181 -115499481 - MER91C DNA MER1_type -32 108 21 2587 226 79 43 chr4 68790298 68791068 -115497594 + L1MC3 LINE L1 6238 7035 -750 306 196 18 0 chr4 68791135 68791191 -115497471 + MLT1F1 LTR MaLR 69 125 -442 696 170 28 35 chr4 68791191 68791332 -115497330 + L1MD3 LINE L1 7404 7543 -452 2179 78 84 48 chr4 68792647 68793004 -115495658 - L1PB1 LINE L1 0 6151 5782 265 127 0 32 chr4 68793027 68793090 -115495572 + (TA)n Simple_repeat Simple_repeat 1 61 0 233 163 0 0 chr4 68793091 68793134 -115495528 + L1P5 LINE L1 5745 5787 -364 * 3498 155 32 10 chr4 68793127 68794270 -115494392 - L1P5 LINE L1 -363 5788 4628 388 154 51 26 chr4 68795024 68795102 -115493560 + MER116 DNA Mariner 1 80 0 357 286 7 91 chr4 68795223 68795377 -115493285 + MIR SINE MIR 89 229 -33 22 80 0 0 chr4 68795413 68795463 -115493199 + AT_rich Low_complexity Low_complexity 1 50 0 281 314 29 9 chr4 68796430 68796535 -115492127 + MIR SINE MIR 107 213 -49 1489 80 0 0 chr4 68797752 68797939 -115490723 + AluY SINE Alu 111 297 -14 279 190 0 0 chr4 68797970 68798028 -115490634 + (CA)n Simple_repeat Simple_repeat 1 58 0 32 26 0 0 chr4 68798074 68798113 -115490549 + AT_rich Low_complexity Low_complexity 1 39 0 193 330 52 61 chr4 68798745 68798860 -115489802 + L2 LINE L2 3194 3307 -6 588 326 85 25 chr4 68799719 68799955 -115488707 + MIR SINE MIR 13 262 0 181 378 27 37 chr4 68800214 68800402 -115488260 - L3b LINE CR1 -122 1461 1276 597 299 19 55 chr4 68800871 68801035 -115487627 + MIR SINE MIR 2 154 -108 2105 99 32 0 chr4 68801035 68801319 -115487343 + AluSp SINE Alu 1 293 -20 597 299 19 55 chr4 68801319 68801425 -115487237 + MIR SINE MIR 154 262 0 237 24 71 0 chr4 68801759 68801801 -115486861 + (ATTAG)n Simple_repeat Simple_repeat 4 48 0 2232 104 3 0 chr4 68803045 68803344 -115485318 + AluSq SINE Alu 1 300 -13 330 314 92 27 chr4 68804053 68804238 -115484424 + MIR SINE MIR 16 212 -50 490 116 23 12 chr4 68804937 68805023 -115483639 + L1MA3 LINE L1 6219 6305 0 225 0 0 0 chr4 68806617 68806642 -115482020 + (TG)n Simple_repeat Simple_repeat 1 25 0 2497 166 37 12 chr4 68808190 68808699 -115479963 + L1MB1 LINE L1 5670 6190 0 1707 130 61 51 chr4 68809514 68809807 -115478855 - AluJb SINE Alu -13 299 4 2476 44 7 0 chr4 68809902 68810196 -115478466 + AluY SINE Alu 1 296 -15 1070 203 10 0 chr4 68810307 68810514 -115478148 - MER3 DNA MER1_type 0 209 1 27 0 0 0 chr4 68810879 68810906 -115477756 + AT_rich Low_complexity Low_complexity 1 27 0 227 255 0 0 chr4 68811965 68812012 -115476650 + (CA)n Simple_repeat Simple_repeat 2 48 0 209 128 26 0 chr4 68812904 68812943 -115475719 + (TAGA)n Simple_repeat Simple_repeat 2 41 0 2443 49 7 3 chr4 68813531 68813835 -115474827 - AluY SINE Alu -6 305 1 32 67 0 0 chr4 68815762 68815822 -115472840 + AT_rich Low_complexity Low_complexity 1 60 0 3276 129 5 16 chr4 68816253 68816805 -115471857 + HERVK9 LTR ERVK 729 1274 -4642 544 116 12 0 chr4 68817572 68817658 -115471004 + AluSg/x SINE Alu 207 293 -17 614 246 6 12 chr4 68820187 68820354 -115468308 + L1M4 LINE L1 3554 3719 -2427 378 203 43 0 chr4 68820354 68820423 -115468239 - MER58C DNA MER1_type 0 215 144 225 94 0 0 chr4 68820431 68820463 -115468199 + (CCCCCT)n Simple_repeat Simple_repeat 4 35 0 649 165 9 0 chr4 68821746 68821861 -115466801 + L1MC1 LINE L1 6213 6328 -5 1942 151 7 0 chr4 68821879 68822183 -115466479 + AluSx SINE Alu 1 306 -6 391 287 17 17 chr4 68822702 68822817 -115465845 + MIR3 SINE MIR 92 206 -2 931 241 44 36 chr4 68822918 68823167 -115465495 - MIR SINE MIR -10 252 2 285 350 120 0 chr4 68823582 68823699 -115464963 + L2 LINE L2 3142 3272 0 1822 170 7 0 chr4 68823743 68824026 -115464636 + AluJb SINE Alu 1 285 -27 31 26 0 0 chr4 68824026 68824064 -115464598 + AT_rich Low_complexity Low_complexity 1 38 0 266 298 60 0 chr4 68824523 68824607 -115464055 - MIR SINE MIR -75 133 45 181 215 13 127 chr4 68825207 68825286 -115463376 + MIR SINE MIR 50 119 -143 22 56 0 0 chr4 68826546 68826582 -115462080 + AT_rich Low_complexity Low_complexity 1 36 0 22 70 0 0 chr4 68828854 68828897 -115459765 + AT_rich Low_complexity Low_complexity 1 43 0 483 264 90 10 chr4 68829188 68829389 -115459273 - MER112 DNA MER1_type -42 218 2 205 359 214 15 chr4 68829655 68829861 -115458801 + L2 LINE L2 2554 2800 -514 1537 190 48 10 chr4 68829878 68829997 -115458665 + AluJo SINE Alu 3 116 -196 180 0 0 0 chr4 68829997 68830017 -115458645 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1537 190 48 10 chr4 68830017 68830186 -115458476 + AluJo SINE Alu 116 302 -10 349 294 67 0 chr4 68830208 68830327 -115458335 + L2 LINE L2 3187 3313 0 276 191 0 0 chr4 68830947 68830994 -115457668 + L2 LINE L2 3267 3313 0 509 260 18 87 chr4 68831259 68831478 -115457184 - MIR SINE MIR -5 257 54 1973 113 50 3 chr4 68831893 68832176 -115456486 - AluSq SINE Alu -17 296 1 695 307 78 4 chr4 68832708 68832952 -115455710 + MIR SINE MIR 1 262 0 288 325 0 0 chr4 68833251 68833328 -115455334 - MIR3 SINE MIR -15 193 117 845 303 49 11 chr4 68833342 68833629 -115455033 - L2 LINE L2 -10 3303 3006 1164 295 45 76 chr4 68833643 68834236 -115454426 - L2 LINE L2 -732 2582 2008 6649 70 7 2 chr4 68834811 68836020 -115452642 + L1PA7 LINE L1 4925 6154 0 24 53 0 0 chr4 68836301 68836339 -115452323 + AT_rich Low_complexity Low_complexity 1 38 0 193 227 61 45 chr4 68836958 68837024 -115451638 + MIR SINE MIR 186 252 -10 1095 174 66 0 chr4 68837286 68837545 -115451117 + L1MA4 LINE L1 6023 6298 -2 4948 132 28 19 chr4 68838024 68838339 -115450323 + L1PA13 LINE L1 4980 5291 -872 2127 113 0 3 chr4 68838339 68838655 -115450007 + AluSx SINE Alu 1 315 0 4948 132 28 19 chr4 68838655 68839509 -115449153 + L1PA13 LINE L1 5291 6161 -2 2108 154 24 16 chr4 68839542 68839925 -115448737 + L1PA16 LINE L1 5772 6157 -9 4067 183 36 29 chr4 68840553 68841626 -115447036 + L1MC1 LINE L1 4198 5287 -1046 524 40 67 0 chr4 68841626 68841701 -115446961 - L1PA4 LINE L1 -3 6152 6073 4067 183 36 29 chr4 68841701 68842467 -115446195 + L1MC1 LINE L1 5287 6046 -287 1939 158 3 23 chr4 68844023 68844326 -115444336 + AluJo SINE Alu 1 297 -15 213 236 18 0 chr4 68844970 68845025 -115443637 + T-rich Low_complexity Low_complexity 5 60 0 21 0 0 0 chr4 68845685 68845706 -115442956 + AT_rich Low_complexity Low_complexity 1 21 0 415 283 18 24 chr4 68847644 68847810 -115440852 + L1MC4a LINE L1 5776 5940 -1868 204 227 0 23 chr4 68848280 68848324 -115440338 + L2 LINE L2 3186 3228 -44 285 246 45 9 chr4 68848418 68848528 -115440134 + (TA)n Simple_repeat Simple_repeat 1 114 0 30 0 0 0 chr4 68848792 68848822 -115439840 + AT_rich Low_complexity Low_complexity 1 30 0 1873 165 0 0 chr4 68849680 68849965 -115438697 + AluJb SINE Alu 3 287 -25 32 26 0 0 chr4 68850252 68850291 -115438371 + AT_rich Low_complexity Low_complexity 1 39 0 2486 75 0 0 chr4 68850677 68850985 -115437677 - AluY SINE Alu -3 308 1 1929 119 51 34 chr4 68851271 68851623 -115437039 - MER46B DNA MER2_type -3 233 1 1228 304 34 13 chr4 68851639 68852146 -115436516 - L2 LINE L2 -81 3232 2720 3338 122 12 10 chr4 68852186 68852696 -115435966 - MER9 LTR ERVK 0 511 1 2079 61 18 0 chr4 68852696 68852973 -115435689 - HERVK9 LTR ERVK 0 5916 5635 22287 94 5 1 chr4 68853069 68856206 -115432456 - HERVK9 LTR ERVK -282 5634 2484 39217 63 10 1 chr4 68856212 68862303 -115426359 - L1PA5 LINE L1 0 6154 11 17874 81 7 5 chr4 68862309 68864805 -115423857 - HERVK9 LTR ERVK -3416 2500 1 3405 122 10 6 chr4 68864805 68865313 -115423349 - MER9 LTR ERVK 0 511 2 2216 136 3 0 chr4 68865341 68865651 -115423011 + AluSx SINE Alu 1 311 -1 205 303 61 0 chr4 68865785 68865851 -115422811 - L2 LINE L2 0 3313 3244 409 317 42 18 chr4 68865891 68866057 -115422605 + MIR SINE MIR 15 185 -58 * 2073 259 94 109 chr4 68866051 68866912 -115421750 - L2 LINE L2 -616 2698 1749 622 207 0 9 chr4 68866912 68867064 -115421598 + FLAM_A SINE Alu 8 158 0 2073 259 94 109 chr4 68867064 68867459 -115421203 - L2 LINE L2 -1565 1749 1350 776 239 6 6 chr4 68867494 68867670 -115420992 + MER45A DNA AcHobo 3 178 0 1408 281 103 57 chr4 68867670 68868809 -115419853 - HAL1 LINE L1 -1055 1452 244 1872 178 59 70 chr4 68868809 68869281 -115419381 - MLT1C LTR MaLR 0 467 1 1408 281 103 57 chr4 68869281 68869434 -115419228 - HAL1 LINE L1 -2263 244 100 739 279 84 21 chr4 68869479 68869821 -115418841 + L2 LINE L2 2686 3057 -256 619 313 16 0 chr4 68869822 68870014 -115418648 - LTR16C LTR ERVL 0 491 297 236 171 0 0 chr4 68870125 68870166 -115418496 + L2 LINE L2 3273 3313 0 1781 178 7 7 chr4 68870321 68870625 -115418037 + AluJo SINE Alu 1 304 -8 28 29 0 0 chr4 68870669 68870704 -115417958 + AT_rich Low_complexity Low_complexity 1 35 0 296 262 19 19 chr4 68870718 68870821 -115417841 - MLT1J LTR MaLR -30 481 379 2154 98 7 3 chr4 68870944 68871229 -115417433 - AluSc SINE Alu -23 286 1 584 237 77 14 chr4 68871233 68871440 -115417222 - MLT1J LTR MaLR -291 220 1 1865 169 110 3 chr4 68871586 68871976 -115416686 + MSTB1 LTR MaLR 1 432 0 29 28 0 0 chr4 68872956 68872992 -115415670 + AT_rich Low_complexity Low_complexity 1 36 0 5589 127 46 5 chr4 68873101 68874017 -115414645 - L1PA16 LINE L1 -9 6157 5213 806 139 16 8 chr4 68874017 68874146 -115414516 + FRAM SINE Alu 22 151 -25 21 57 0 0 chr4 68874334 68874369 -115414293 + AT_rich Low_complexity Low_complexity 1 35 0 28 29 0 0 chr4 68874444 68874479 -115414183 + AT_rich Low_complexity Low_complexity 1 35 0 267 312 78 28 chr4 68874957 68875099 -115413563 + MIR SINE MIR 35 182 -80 2187 88 0 3 chr4 68875541 68875880 -115412782 - AluSp SINE Alu 0 338 1 450 247 305 23 chr4 68876763 68876937 -115411725 - MIR SINE MIR -3 259 37 287 233 23 12 chr4 68877111 68877197 -115411465 + GA-rich Low_complexity Low_complexity 1 87 0 482 321 68 0 chr4 68877266 68877428 -115411234 + LTR50 LTR ERVL 4 176 -619 534 242 57 48 chr4 68877444 68877671 -115410991 + L1ME LINE L1 3118 3346 -2800 330 247 316 5 chr4 68877831 68878021 -115410641 - LTR50 LTR ERVL -344 451 203 525 292 22 13 chr4 68878021 68878247 -115410415 + L1ME LINE L1 5461 5688 -433 201 256 70 35 chr4 68878315 68878401 -115410261 + L2 LINE L2 3018 3106 -166 186 246 215 0 chr4 68878482 68878547 -115410115 + L2 LINE L2 3234 3312 -1 1087 293 49 0 chr4 68878692 68879037 -115409625 + LTR33 LTR ERVL 1 362 -159 2288 119 0 0 chr4 68879047 68879357 -115409305 + AluSg SINE Alu 1 310 0 264 30 0 0 chr4 68879365 68879398 -115409264 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 294 242 111 20 chr4 68879433 68879532 -115409130 + LTR33 LTR ERVL 408 515 -6 374 342 32 0 chr4 68880286 68880444 -115408218 - L2 LINE L2 -214 3058 2896 442 268 92 7 chr4 68881657 68881799 -115406863 - MIR SINE MIR -108 154 1 226 91 0 0 chr4 68881918 68881951 -115406711 + L1MB8 LINE L1 4732 4764 -1382 * 1598 99 0 0 chr4 68881950 68882163 -115406499 + L1P3 LINE L1 1 213 -6248 * 6771 105 5 1 chr4 68882160 68883084 -115405578 + THE1A-int LTR MaLR 61 988 -592 2966 70 3 0 chr4 68883104 68883478 -115405184 + THE1A-int LTR MaLR 1206 1580 0 2360 106 8 17 chr4 68883478 68883836 -115404826 + THE1A LTR MaLR 1 355 0 4565 163 30 6 chr4 68883836 68884670 -115403992 + L1MB8 LINE L1 5306 6159 -19 5508 85 26 6 chr4 68885311 68886115 -115402547 - L1MA2 LINE L1 0 6304 5485 675 288 76 14 chr4 68886346 68886634 -115402028 - MLT1I LTR MaLR -17 392 87 405 262 10 10 chr4 68886758 68886861 -115401801 - MIR3 SINE MIR -10 198 96 1535 177 73 12 chr4 68887126 68887500 -115401162 - MER63C DNA MER1_type -359 571 178 430 282 134 0 chr4 68937655 68937804 -115350858 + L3 LINE CR1 1192 1360 -217 224 328 7 0 chr4 68937926 68938004 -115350658 + CT-rich Low_complexity Low_complexity 1 78 0 807 194 130 121 chr4 68938004 68938664 -115349998 - L1MC5 LINE L1 -36 7925 7260 606 176 99 21 chr4 68938734 68938876 -115349786 - HAL1 LINE L1 -806 1701 1549 374 265 10 10 chr4 68939014 68939116 -115349546 - HAL1 LINE L1 -1624 883 782 1223 264 75 36 chr4 68939144 68939610 -115349052 - MLT1E3 LTR MaLR 0 624 141 260 311 0 0 chr4 68940813 68940874 -115347788 - L2 LINE L2 -214 3058 2998 1328 113 19 9 chr4 68940904 68941116 -115347546 + AluY SINE Alu 1 214 -97 216 214 29 0 chr4 68941185 68941255 -115347407 + A-rich Low_complexity Low_complexity 6 77 0 302 261 85 6 chr4 68941389 68941554 -115347108 - AluSg/x SINE Alu -5 297 120 2096 133 22 11 chr4 68941556 68941916 -115346746 + MER4B-int LTR ERV1 6395 6758 0 2857 124 26 25 chr4 68941916 68942006 -115346656 + MER4B LTR ERV1 1 89 -690 2272 97 3 0 chr4 68942006 68942304 -115346358 + AluSp SINE Alu 1 299 -14 2857 124 26 25 chr4 68942304 68942795 -115345867 + MER4B LTR ERV1 89 749 -30 2614 191 28 3 chr4 68942797 68943378 -115345284 + L1 LINE L1 2580 3174 -2972 290 314 157 23 chr4 68943485 68943657 -115345005 - L2 LINE L2 -343 2971 2777 299 264 38 19 chr4 68943677 68943783 -115344879 - L3 LINE CR1 -340 1237 1130 1747 158 95 0 chr4 68944826 68945162 -115343500 + L1MCa LINE L1 30 397 -6029 242 283 0 0 chr4 68945341 68945394 -115343268 + MER94 DNA DNA 6 58 -76 330 238 147 7 chr4 68946068 68946211 -115342451 - L1MC/D LINE L1 -2048 5760 5598 704 287 80 38 chr4 68946449 68946686 -115341976 - MIR SINE MIR -14 248 2 26 64 0 0 chr4 68948948 68948995 -115339667 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr4 68949219 68949241 -115339421 + AT_rich Low_complexity Low_complexity 1 22 0 948 99 0 0 chr4 68950369 68950490 -115338172 + AluSg/x SINE Alu 171 291 -21 501 220 60 0 chr4 68950761 68950861 -115337801 + MLT1J1 LTR MaLR 3 108 -338 7765 208 8 8 chr4 68950963 68952721 -115335941 - L1 LINE L1 -1054 5092 3336 881 196 23 23 chr4 68952721 68952940 -115335722 - AluSg/x SINE Alu 0 312 94 25 0 0 0 chr4 68954322 68954347 -115334315 + AT_rich Low_complexity Low_complexity 1 25 0 333 0 0 0 chr4 68956135 68956172 -115332490 + (TG)n Simple_repeat Simple_repeat 2 38 0 230 304 0 13 chr4 68956176 68956255 -115332407 + GA-rich Low_complexity Low_complexity 4 81 0 722 297 108 36 chr4 68956404 68956764 -115331898 + L2 LINE L2 2924 3309 -4 241 162 0 0 chr4 68957178 68957215 -115331447 + MER5B DNA MER1_type 1 37 -141 504 268 8 16 chr4 68957238 68957365 -115331297 + FLAM_A SINE Alu 9 134 -8 531 226 17 0 chr4 68957369 68957484 -115331178 - MER5B DNA MER1_type -61 117 1 443 249 138 28 chr4 68958666 68958919 -115329743 + L1MCa LINE L1 870 1150 -5457 227 279 13 44 chr4 68959074 68959232 -115329430 + A-rich Low_complexity Low_complexity 3 155 0 257 253 11 0 chr4 68959353 68959440 -115329222 - L1M4 LINE L1 -1730 4416 4329 1504 231 34 46 chr4 68959478 68959955 -115328707 - L1M4 LINE L1 -2164 3982 3510 2118 106 7 3 chr4 68959955 68960247 -115328415 - AluSc SINE Alu -16 293 1 1504 231 34 46 chr4 68960247 68960292 -115328370 - L1M4 LINE L1 -2636 3510 3466 394 252 164 12 chr4 68960346 68960441 -115328221 - L1M4 LINE L1 -2846 3300 3221 2001 128 30 0 chr4 68960441 68960738 -115327924 - AluSx SINE Alu -6 306 1 394 252 164 12 chr4 68960738 68960892 -115327770 - L1M4 LINE L1 -2925 3221 3013 276 294 0 12 chr4 68960931 68961016 -115327646 + (TA)n Simple_repeat Simple_repeat 2 85 0 193 175 0 25 chr4 68961124 68961164 -115327498 - L2 LINE L2 -2 3311 3273 302 304 33 0 chr4 68961225 68961317 -115327345 - L2 LINE L2 -518 2796 2702 27 81 0 0 chr4 68961544 68961606 -115327056 + AT_rich Low_complexity Low_complexity 1 62 0 37 0 0 0 chr4 68962012 68962049 -115326613 + AT_rich Low_complexity Low_complexity 1 37 0 414 301 30 45 chr4 68964236 68964369 -115324293 - L2 LINE L2 -1 3271 3141 21 82 0 0 chr4 68964386 68964435 -115324227 + AT_rich Low_complexity Low_complexity 1 49 0 186 333 42 0 chr4 68964548 68964620 -115324042 - L2 LINE L2 -230 3042 2968 1453 54 22 0 chr4 68964792 68964976 -115323686 - AluY SINE Alu -6 305 118 2210 85 3 41 chr4 68964979 68965296 -115323366 - AluY SINE Alu -6 305 1 854 101 7 50 chr4 68965296 68965435 -115323227 - AluSc SINE Alu -176 133 1 1164 198 76 0 chr4 68965462 68965816 -115322846 - L1PA16 LINE L1 -9 6157 5777 32 26 0 0 chr4 68966812 68966851 -115321811 + AT_rich Low_complexity Low_complexity 1 39 0 2784 167 26 20 chr4 68968021 68968566 -115320096 + L1MA8 LINE L1 5254 5801 -490 459 177 0 0 chr4 68968566 68968662 -115320000 + GA-rich Low_complexity Low_complexity 1 96 0 2541 119 16 61 chr4 68968663 68968995 -115319667 + L1MA8 LINE L1 5819 6123 -168 1964 134 3 7 chr4 68968995 68969293 -115319369 - AluSq SINE Alu -16 297 1 2541 119 16 61 chr4 68969293 68969454 -115319208 + L1MA8 LINE L1 6123 6290 -1 1611 258 21 12 chr4 68969486 68970057 -115318605 + L1MEc LINE L1 2131 2668 -3547 390 117 26 26 chr4 68970073 68970150 -115318512 + AluS SINE Alu 1 77 -223 9931 175 48 27 chr4 68970250 68972560 -115316102 + MER21-int LTR ERV1 1102 3518 -673 4216 90 106 2 chr4 68972560 68973183 -115315479 - LTR12 LTR ERV1 0 688 1 9931 175 48 27 chr4 68973183 68973339 -115315323 + MER21-int LTR ERV1 3518 3669 -522 191 404 0 10 chr4 68973517 68973616 -115315046 - L2 LINE L2 -519 2795 2698 2247 119 3 0 chr4 68973628 68973939 -115314723 + AluSx SINE Alu 1 413 0 242 346 0 0 chr4 68973939 68974040 -115314622 + A-rich Low_complexity Low_complexity 1 180 0 3054 158 37 40 chr4 68974147 68974799 -115313863 - L1MA4 LINE L1 -5 6295 5646 265 250 129 14 chr4 68974799 68974939 -115313723 - MER52A LTR ERV1 -1 1754 1599 10655 68 1 1 chr4 68975057 68976458 -115312204 + L1P LINE L1 1363 2764 -3382 6855 62 0 0 chr4 68976454 68977332 -115311330 + L1P LINE L1 3289 4166 -1980 * 1989 125 4 4 chr4 68977819 68978098 -115310564 - AluSg SINE Alu -31 279 1 449 195 26 0 chr4 68978452 68978529 -115310133 + Charlie3 DNA MER1_type 2634 2712 0 2283 126 56 0 chr4 68978629 68978986 -115309676 - MER51B LTR ERV1 0 377 1 248 256 61 12 chr4 68979239 68979321 -115309341 - HAL1 LINE L1 -941 1566 1481 6975 98 61 6 chr4 68979486 68980522 -115308140 + MER4B-int LTR ERV1 5217 6309 -449 1852 139 7 0 chr4 68980596 68980877 -115307785 - AluSx SINE Alu -29 283 1 204 135 0 0 chr4 68981230 68981267 -115307395 + (CA)n Simple_repeat Simple_repeat 1 37 0 1451 169 81 10 chr4 68981281 68981576 -115307086 - MER46B DNA MER2_type -1 235 45 196 29 0 57 chr4 68981763 68981798 -115306864 + (CCCCCA)n Simple_repeat Simple_repeat 2 34 0 2390 74 3 7 chr4 68982358 68982654 -115306008 - AluSq SINE Alu -18 295 1 197 333 167 36 chr4 68983144 68983312 -115305350 + MIR3 SINE MIR 19 208 0 219 244 0 0 chr4 68984476 68984521 -115304141 + (ATG)n Simple_repeat Simple_repeat 2 46 0 209 264 56 28 chr4 68984521 68984593 -115304069 - MIR SINE MIR -4 258 185 2175 240 148 106 chr4 68984725 68985397 -115303265 - L2 LINE L2 -8 3305 2662 638 188 26 8 chr4 68985397 68985514 -115303148 - AluJb SINE Alu -26 286 168 2175 240 148 106 chr4 68985514 68986383 -115302279 - L2 LINE L2 -651 2662 1540 1231 139 63 8 chr4 68986401 68986653 -115302009 + AluSx SINE Alu 1 266 -46 1335 241 142 25 chr4 68986756 68987147 -115301515 + L1ME1 LINE L1 4908 5252 -914 1668 179 7 7 chr4 68987147 68987448 -115301214 - AluJb SINE Alu -11 301 1 1335 241 142 25 chr4 68987448 68988157 -115300505 + L1ME1 LINE L1 5252 6161 -5 215 234 0 0 chr4 68988167 68988214 -115300448 + A-rich Low_complexity Low_complexity 2 48 0 225 0 0 0 chr4 68988730 68988755 -115299907 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 407 295 121 14 chr4 68988814 68989021 -115299641 - L2 LINE L2 0 3313 3085 252 250 62 38 chr4 68989225 68989281 -115299381 + L2 LINE L2 3190 3250 -22 2072 98 10 0 chr4 68989281 68989576 -115299086 - AluY SINE Alu -10 301 4 252 250 62 38 chr4 68989576 68989599 -115299063 + L2 LINE L2 3250 3271 -1 2243 99 3 3 chr4 68989695 68989997 -115298665 - AluSg SINE Alu -8 302 1 1113 109 0 12 chr4 68990009 68990174 -115298488 - AluSg/x SINE Alu -3 307 145 1982 136 0 7 chr4 68990469 68990763 -115297899 - AluSx SINE Alu -20 292 1 361 302 69 26 chr4 68992302 68992418 -115296244 + L2 LINE L2 3150 3270 -2 308 219 73 49 chr4 68993448 68993530 -115295132 + L1ME LINE L1 5506 5589 -532 7177 48 3 3 chr4 68993534 68994611 -115294051 - L1PA5 LINE L1 0 6154 5079 652 231 86 56 chr4 68995578 68995847 -115292815 + MLT1J2 LTR MaLR 45 321 -129 466 331 69 27 chr4 68996056 68996316 -115292346 + MLT1K LTR MaLR 141 411 -177 192 392 83 0 chr4 68996994 68997114 -115291548 + L2 LINE L2 2563 2692 -622 389 242 78 20 chr4 68997138 68997291 -115291371 - L1ME4a LINE L1 -1 6120 5959 31 0 0 0 chr4 68997328 68997359 -115291303 + AT_rich Low_complexity Low_complexity 1 31 0 1641 187 7 0 chr4 68997519 68997802 -115290860 + AluSx SINE Alu 1 285 -27 201 39 0 0 chr4 68997802 68997828 -115290834 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 28 29 0 0 chr4 68998009 68998044 -115290618 + AT_rich Low_complexity Low_complexity 1 35 0 1386 157 57 60 chr4 68998103 68998378 -115290284 + MER114 LTR ERV 17 291 -357 213 39 0 0 chr4 68998378 68998404 -115290258 + (TATG)n Simple_repeat Simple_repeat 2 27 0 1981 144 0 0 chr4 68998404 68998688 -115289974 - AluSx SINE Alu -28 284 1 1386 157 57 60 chr4 68998688 68998813 -115289849 + MER114 LTR ERV 289 417 -231 1995 208 63 5 chr4 68998815 68999258 -115289404 - MLT1D LTR MaLR -1 504 36 1878 64 49 11 chr4 68999277 68999541 -115289121 + AluY SINE Alu 8 281 -30 276 318 6 24 chr4 68999624 68999853 -115288809 + (CACCC)n Simple_repeat Simple_repeat 1 224 0 23 54 0 0 chr4 69000912 69000949 -115287713 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr4 69001589 69001613 -115287049 + AT_rich Low_complexity Low_complexity 1 24 0 56 0 0 0 chr4 69001664 69001720 -115286942 + AT_rich Low_complexity Low_complexity 1 56 0 321 206 0 82 chr4 69001940 69002134 -115286528 + A-rich Low_complexity Low_complexity 3 180 0 21 71 0 0 chr4 69002637 69002679 -115285983 + AT_rich Low_complexity Low_complexity 1 42 0 223 309 0 15 chr4 69002848 69002916 -115285746 + L2 LINE L2 2826 2892 -421 433 224 24 0 chr4 69003069 69003154 -115285508 + L2 LINE L2 3227 3313 0 260 267 0 0 chr4 69003301 69003361 -115285301 - L1ME4a LINE L1 -2068 5740 5681 2667 132 140 10 chr4 69003423 69003909 -115284753 + MER44D DNA MER2_type 2 605 0 679 140 18 0 chr4 69004191 69004305 -115284357 + AluY SINE Alu 187 302 -9 1585 166 36 7 chr4 69004322 69004622 -115284040 - AluJo SINE Alu 0 312 2 23 33 0 0 chr4 69004799 69004829 -115283833 + AT_rich Low_complexity Low_complexity 1 30 0 279 268 0 49 chr4 69005433 69005515 -115283147 + L2 LINE L2 3187 3264 -8 309 284 77 38 chr4 69005789 69005972 -115282690 + MIR SINE MIR 11 200 -62 825 160 80 46 chr4 69006575 69006812 -115281850 - Charlie5 DNA MER1_type -27 2585 2341 373 272 107 0 chr4 69006812 69006915 -115281747 - MER81 DNA DNA 0 114 1 492 163 49 49 chr4 69007044 69007167 -115281495 - MER3 DNA MER1_type -18 191 69 1037 131 17 6 chr4 69007183 69007358 -115281304 + AluY SINE Alu 134 310 -1 2064 98 4 4 chr4 69010200 69010476 -115278186 - AluSc SINE Alu -19 290 15 594 217 30 60 chr4 69010943 69011178 -115277484 - L1MC5 LINE L1 -27 7934 7707 753 176 0 37 chr4 69011433 69011569 -115277093 - FLAM_C SINE Alu -12 131 1 1763 190 0 0 chr4 69011885 69012180 -115276482 - AluJo SINE Alu -17 295 1 204 309 64 64 chr4 69012463 69012573 -115276089 - MIR SINE MIR -55 153 44 335 244 49 15 chr4 69012673 69012780 -115275882 - MER20 DNA MER1_type -40 179 84 21 57 0 0 chr4 69013102 69013137 -115275525 + AT_rich Low_complexity Low_complexity 1 35 0 267 62 0 0 chr4 69013166 69013198 -115275464 - U6 snRNA snRNA -75 32 1 189 107 0 0 chr4 69014542 69014570 -115274092 + (ATG)n Simple_repeat Simple_repeat 2 29 0 180 0 0 0 chr4 69014636 69014656 -115274006 + (TTA)n Simple_repeat Simple_repeat 1 20 0 235 160 200 0 chr4 69014659 69014709 -115273953 - MIR SINE MIR -119 143 84 505 246 256 20 chr4 69014741 69014936 -115273726 - MIR SINE MIR -4 258 18 1688 161 11 0 chr4 69016377 69016644 -115272018 + AluJo SINE Alu 1 270 -42 1065 336 42 46 chr4 69016749 69017400 -115271262 - L1PA13 LINE L1 -6138 649 2 748 327 65 4 chr4 69017412 69017690 -115270972 - L2 LINE L2 -530 2784 2490 392 287 10 0 chr4 69017701 69017802 -115270860 + L2 LINE L2 1334 1435 -1879 366 337 110 37 chr4 69017826 69018152 -115270510 - L2 LINE L2 -2907 407 58 1912 119 0 8 chr4 69018931 69019191 -115269471 + AluSx SINE Alu 31 288 -24 1125 286 106 16 chr4 69019958 69020336 -115268326 - MLT2E LTR ERVL -2 626 215 27 0 0 0 chr4 69024123 69024150 -115264512 + AT_rich Low_complexity Low_complexity 1 27 0 180 0 0 0 chr4 69025115 69025135 -115263527 + (A)n Simple_repeat Simple_repeat 1 20 0 25 65 0 0 chr4 69027782 69027828 -115260834 + AT_rich Low_complexity Low_complexity 1 46 0 439 249 66 72 chr4 69028196 69028377 -115260285 - HAL1 LINE L1 -1882 625 446 203 211 0 28 chr4 69028726 69028797 -115259865 + (TAA)n Simple_repeat Simple_repeat 3 71 0 1869 122 51 7 chr4 69028881 69029177 -115259485 - AluSx SINE Alu -3 309 1 437 259 194 7 chr4 69030218 69030357 -115258305 - MER5A DNA MER1_type -14 175 11 380 331 16 71 chr4 69030400 69030538 -115258124 + MER5B DNA MER1_type 5 132 -46 1561 181 16 23 chr4 69030538 69030848 -115257814 + AluJb SINE Alu 5 312 0 380 331 16 71 chr4 69030848 69030893 -115257769 + MER5B DNA MER1_type 132 178 0 1352 202 3 70 chr4 69031197 69031351 -115257311 + AluJo SINE Alu 1 125 -187 1680 177 13 3 chr4 69031351 69031650 -115257012 + AluJo SINE Alu 9 310 -2 1352 202 3 70 chr4 69031650 69031807 -115256855 + AluJo SINE Alu 125 291 -21 446 282 22 39 chr4 69031862 69032043 -115256619 - MLT1K LTR MaLR -107 481 304 2448 82 0 13 chr4 69032539 69032855 -115255807 - AluSx SINE Alu 0 312 1 233 355 64 18 chr4 69033594 69033704 -115254958 - L2 LINE L2 0 3313 3199 25 51 0 0 chr4 69034601 69034640 -115254022 + AT_rich Low_complexity Low_complexity 1 39 0 960 162 152 0 chr4 69034856 69035047 -115253615 + AluJo SINE Alu 1 220 -92 244 73 0 109 chr4 69035047 69035102 -115253560 + AluJo SINE Alu 85 133 0 303 173 0 0 chr4 69035115 69035167 -115253495 - L1MC4 LINE L1 -1339 6703 6652 251 203 34 0 chr4 69035173 69035232 -115253430 + (TA)n Simple_repeat Simple_repeat 2 62 0 22 35 0 0 chr4 69035308 69035337 -115253325 + AT_rich Low_complexity Low_complexity 1 29 0 2963 192 59 27 chr4 69035919 69036626 -115252036 + Charlie1a DNA MER1_type 27 756 -699 1210 243 49 0 chr4 69037473 69037740 -115250922 - MER82 DNA MER2_type 0 653 374 2164 96 36 9 chr4 69037753 69038087 -115250575 - L1MA2 LINE L1 0 6304 5962 1945 112 11 0 chr4 69038087 69038373 -115250289 - L1MA2 LINE L1 -580 5725 5437 1994 107 107 114 chr4 69039000 69039430 -115249232 - MSTA LTR MaLR -1 427 1 789 232 16 11 chr4 69039448 69039638 -115249024 + AluJo SINE Alu 121 311 -1 702 183 43 57 chr4 69040814 69041115 -115247547 - AluYa5 SINE Alu -4 297 1 25 51 0 0 chr4 69041739 69041778 -115246884 + AT_rich Low_complexity Low_complexity 1 39 0 582 208 100 0 chr4 69042295 69042415 -115246247 - MER96 DNA MER1_type? -43 132 1 2305 70 3 20 chr4 69042906 69043208 -115245454 - AluY SINE Alu -14 297 1 1565 188 98 118 chr4 69043872 69044118 -115244544 - Charlie1a DNA MER1_type -2189 572 322 563 186 14 64 chr4 69044118 69044258 -115244404 - FLAM_C SINE Alu 0 133 1 1565 188 98 118 chr4 69044258 69044595 -115244067 - Charlie1a DNA MER1_type -2439 322 1 25 0 0 0 chr4 69044690 69044715 -115243947 + AT_rich Low_complexity Low_complexity 1 25 0 636 91 20 10 chr4 69045561 69045660 -115243002 + AluY SINE Alu 184 283 -28 2140 91 4 0 chr4 69046011 69046285 -115242377 + AluSc SINE Alu 1 275 -34 21 0 0 0 chr4 69046621 69046642 -115242020 + AT_rich Low_complexity Low_complexity 1 21 0 615 202 173 65 chr4 69046805 69047157 -115241505 + HAL1 LINE L1 1233 1622 -885 234 189 108 0 chr4 69047520 69047594 -115241068 + HAL1b LINE L1 746 827 -521 418 225 17 11 chr4 69047830 69048054 -115240608 + A-rich Low_complexity Low_complexity 1 225 0 2462 89 0 0 chr4 69048514 69048818 -115239844 - AluSq SINE Alu -9 304 1 484 328 38 19 chr4 69049893 69050317 -115238345 - ERVL LTR ERVL -851 4913 4428 769 220 38 6 chr4 69050378 69050537 -115238125 + MLT1E LTR MaLR 1 164 -429 320 225 166 96 chr4 69050532 69050630 -115238032 + MLT1E LTR MaLR 119 209 -384 * 828 208 18 6 chr4 69050630 69050798 -115237864 - MER45A DNA AcHobo -4 174 5 320 225 166 96 chr4 69050798 69050886 -115237776 + MLT1E LTR MaLR 209 318 -275 222 315 0 0 chr4 69051237 69051291 -115237371 - L3 LINE CR1 -1297 280 227 1910 100 23 13 chr4 69051318 69051617 -115237045 + AluY SINE Alu 1 302 -9 628 175 130 32 chr4 69052053 69052207 -115236455 + MER82 DNA MER2_type 14 182 -471 820 191 13 6 chr4 69052233 69052390 -115236272 - L1PA15 LINE L1 -13 6152 5995 2741 190 40 16 chr4 69052727 69053359 -115235303 - L1 LINE L1 -763 5383 4737 1721 178 0 27 chr4 69053361 69053653 -115235009 - AluJo SINE Alu -23 289 6 1217 142 23 0 chr4 69053659 69053877 -115234785 - L1 LINE L1 -2637 3509 3287 3651 117 4 0 chr4 69054294 69054792 -115233870 - MER1A DNA MER1_type -1 528 29 1711 103 126 0 chr4 69054994 69055255 -115233407 + AluSx SINE Alu 1 294 -18 446 229 18 83 chr4 69055356 69055643 -115233019 - L1M4 LINE L1 -1575 4753 4485 225 83 0 0 chr4 69055766 69055802 -115232860 + (T)n Simple_repeat Simple_repeat 1 36 0 2579 31 3 0 chr4 69055966 69056260 -115232402 - AluYa5 SINE Alu -16 295 1 2908 223 43 63 chr4 69056775 69057891 -115230771 - L1M4 LINE L1 -4054 2274 1181 2146 130 11 11 chr4 69057916 69058285 -115230377 - L1M4 LINE L1 -4120 1208 840 267 71 24 0 chr4 69058423 69058465 -115230197 + MLT1E3 LTR MaLR 579 621 -3 401 298 16 8 chr4 69058511 69058632 -115230030 - ERVL LTR ERVL -1536 4228 4107 273 119 0 0 chr4 69059426 69059468 -115229194 + (T)n Simple_repeat Simple_repeat 1 42 0 310 346 101 19 chr4 69059632 69059840 -115228822 + L3 LINE CR1 444 668 -909 1326 256 95 49 chr4 69059891 69060430 -115228232 + MLT1F1 LTR MaLR 5 567 0 750 258 43 14 chr4 69060436 69060645 -115228017 + MER58C DNA MER1_type 1 215 0 565 331 113 28 chr4 69060648 69060974 -115227688 + L3 LINE CR1 721 1074 -503 859 147 15 0 chr4 69061311 69061447 -115227215 - MSTC LTR MaLR -290 138 1 1018 268 22 20 chr4 69061462 69061827 -115226835 - L2 LINE L2 -244 3069 2703 2153 114 3 10 chr4 69061827 69062221 -115226441 - AluY SINE Alu 0 393 2 571 256 28 34 chr4 69062222 69062398 -115226264 - L2 LINE L2 -591 2723 2549 30 27 0 0 chr4 69062847 69062884 -115225778 + AT_rich Low_complexity Low_complexity 1 37 0 759 161 77 14 chr4 69063015 69063158 -115225504 + Tigger3(Golem) DNA MER2_type 2877 3028 -1 612 287 129 0 chr4 69063874 69064083 -115224579 + MIR SINE MIR 24 259 -3 495 314 54 4 chr4 69064372 69064614 -115224048 - L1M4 LINE L1 -2599 3547 3294 210 118 0 0 chr4 69064681 69064715 -115223947 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1933 128 25 4 chr4 69064718 69064999 -115223663 - AluSx SINE Alu -25 287 1 1288 199 105 39 chr4 69065002 69065263 -115223399 - L1M4 LINE L1 -2974 3172 2930 642 222 57 26 chr4 69065263 69065457 -115223205 + MER105 DNA DNA 3 202 -2 1288 199 105 39 chr4 69065457 69065653 -115223009 - L1M4 LINE L1 -3216 2930 2685 446 73 0 0 chr4 69065829 69065897 -115222765 + AluSp/q SINE Alu 241 308 -5 200 290 10 40 chr4 69066951 69067051 -115221611 - L2 LINE L2 -83 3230 3134 3656 108 6 2 chr4 69067154 69067682 -115220980 - L1PA16 LINE L1 -209 5957 5428 2235 91 3 0 chr4 69067699 69067986 -115220676 - AluSx SINE Alu -24 288 1 184 297 0 0 chr4 69068430 69068467 -115220195 - MIR SINE MIR -139 69 33 296 211 132 0 chr4 69069502 69069578 -115219084 - MIR SINE MIR -52 210 125 23 33 0 0 chr4 69069690 69069720 -115218942 + AT_rich Low_complexity Low_complexity 1 30 0 622 149 0 137 chr4 69070079 69070240 -115218422 - FLAM_C SINE Alu -4 139 1 204 151 11 86 chr4 69070976 69071069 -115217593 + (TTA)n Simple_repeat Simple_repeat 3 88 0 1386 160 13 13 chr4 69072119 69072357 -115216305 + AluJo SINE Alu 53 290 -22 2168 101 7 13 chr4 69072528 69072836 -115215826 - AluSx SINE Alu -6 306 1 748 162 95 7 chr4 69073058 69073206 -115215456 + L1MB2 LINE L1 5715 5875 -296 23 0 0 0 chr4 69073495 69073518 -115215144 + AT_rich Low_complexity Low_complexity 1 23 0 3560 101 57 22 chr4 69073644 69074226 -115214436 - MER4B-int LTR ERV1 -1705 5053 4452 3404 133 6 1 chr4 69074225 69074767 -115213895 - MER4B-int LTR ERV1 -2670 4088 3507 * 1754 201 46 3 chr4 69074768 69075116 -115213546 + L1P LINE L1 1 363 -5783 562 248 74 31 chr4 69075625 69075883 -115212779 + L1MEc LINE L1 1876 2144 -4252 521 93 70 0 chr4 69075913 69075999 -115212663 + L1 LINE L1 4660 4751 -1395 1473 168 31 45 chr4 69076002 69076293 -115212369 + AluJo SINE Alu 3 289 -23 2268 191 21 4 chr4 69076321 69076792 -115211870 + L1 LINE L1 4745 5223 -923 26 0 0 0 chr4 69076970 69076996 -115211666 + AT_rich Low_complexity Low_complexity 1 26 0 2118 255 121 17 chr4 69077170 69077833 -115210829 - L1MEc LINE L1 -5628 768 37 2367 91 0 3 chr4 69077955 69078262 -115210400 - AluSc SINE Alu 0 309 4 1912 153 3 3 chr4 69081860 69082167 -115206495 + AluSx SINE Alu 1 307 -5 27 0 0 0 chr4 69082773 69082800 -115205862 + AT_rich Low_complexity Low_complexity 1 27 0 790 209 0 13 chr4 69082851 69083004 -115205658 + FAM SINE Alu 25 175 -10 255 299 276 0 chr4 69083206 69083423 -115205239 - L3 LINE CR1 -410 1167 891 238 270 202 0 chr4 69084534 69084623 -115204039 + MIR SINE MIR 84 190 -72 517 217 39 0 chr4 69084637 69084766 -115203896 + L1ME LINE L1 5359 5492 -672 2215 25 61 4 chr4 69084870 69085149 -115203513 - AluY SINE Alu -16 295 1 32 0 0 0 chr4 69085615 69085647 -115203015 + AT_rich Low_complexity Low_complexity 1 32 0 31 26 0 0 chr4 69085690 69085728 -115202934 + AT_rich Low_complexity Low_complexity 1 38 0 2000 127 0 0 chr4 69136053 69136321 -115152341 - AluSq SINE Alu -45 268 1 2570 210 16 7 chr4 69136690 69137251 -115151411 + L1M2 LINE L1 1188 1753 -5096 1275 97 0 43 chr4 69137253 69137439 -115151223 + AluSc SINE Alu 1 178 -131 591 193 0 9 chr4 69137636 69137750 -115150912 + L1M2 LINE L1 96 208 -6641 2257 118 3 0 chr4 69137987 69138291 -115150371 + AluSp SINE Alu 1 305 -8 255 214 18 0 chr4 69138322 69138378 -115150284 + (TGG)n Simple_repeat Simple_repeat 1 57 0 45 34 0 0 chr4 69138379 69138438 -115150224 + AT_rich Low_complexity Low_complexity 1 59 0 245 176 55 11 chr4 69138688 69138779 -115149883 + (TA)n Simple_repeat Simple_repeat 2 96 0 2324 115 0 0 chr4 69140391 69140695 -115147967 - AluSx SINE Alu -8 304 1 23 33 0 0 chr4 69140822 69140852 -115147810 + AT_rich Low_complexity Low_complexity 1 30 0 306 456 18 101 chr4 69140855 69141083 -115147579 - MER3 DNA MER1_type 0 209 1 964 160 122 4 chr4 69141129 69141366 -115147296 - L1MD3 LINE L1 0 7995 7731 1002 203 153 32 chr4 69141419 69141516 -115147146 + MER58B DNA MER1_type 2 86 -2334 1747 157 36 16 chr4 69141516 69141821 -115146841 + AluJb SINE Alu 1 311 -1 1002 203 153 32 chr4 69141821 69142004 -115146658 + MER58B DNA MER1_type 86 316 -25 25 0 0 0 chr4 69142183 69142208 -115146454 + AT_rich Low_complexity Low_complexity 1 25 0 459 313 6 22 chr4 69142836 69143018 -115145644 + CT-rich Low_complexity Low_complexity 1 179 0 397 308 145 0 chr4 69143230 69143457 -115145205 - L1MC4 LINE L1 -364 7678 7419 1390 184 8 4 chr4 69143467 69143701 -115144961 + AluJo SINE Alu 1 235 -77 306 0 0 0 chr4 69143898 69143932 -115144730 + (TA)n Simple_repeat Simple_repeat 2 35 0 863 75 0 0 chr4 69143932 69144039 -115144623 - AluSg/x SINE Alu -8 301 195 923 167 17 29 chr4 69144088 69144262 -115144400 + AluJo SINE Alu 127 298 -14 1432 174 53 63 chr4 69144847 69145146 -115143516 - AluJo SINE Alu -16 296 1 620 201 8 15 chr4 69145152 69145286 -115143376 - FLAM_C SINE Alu 0 133 1 341 154 0 0 chr4 69145542 69145594 -115143068 + AluSp SINE Alu 137 188 -115 216 67 0 0 chr4 69146148 69146178 -115142484 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 196 351 167 14 chr4 69146624 69146906 -115141756 - L2 LINE L2 -1919 1395 1071 540 230 33 44 chr4 69147069 69147313 -115141349 - MER61D LTR ERV1 -15 750 334 583 309 38 24 chr4 69147427 69147637 -115141025 - LTR28 LTR ERV1 -796 224 12 22 0 0 0 chr4 69147899 69147921 -115140741 + AT_rich Low_complexity Low_complexity 1 22 0 1001 222 16 66 chr4 69148256 69148621 -115140041 + MLT1C LTR MaLR 6 352 -115 419 152 0 111 chr4 69148621 69148720 -115139942 + AluJ/FLAM SINE Alu 1 88 -224 237 32 0 0 chr4 69148720 69148751 -115139911 - Tigger3(Golem) DNA MER2_type -2744 285 255 1801 161 7 20 chr4 69148751 69149055 -115139607 - AluJb SINE Alu -12 300 1 1422 161 0 4 chr4 69149055 69149298 -115139364 + Tigger3(Golem) DNA MER2_type 2787 3028 -1 1210 179 0 0 chr4 69149298 69149502 -115139160 - Tigger3(Golem) DNA MER2_type -2825 204 1 412 243 129 21 chr4 69149527 69149667 -115138995 + MER82 DNA MER2_type 1 155 -498 2354 118 127 10 chr4 69149703 69150120 -115138542 - Tigger1 DNA MER2_type -2 2416 1951 1388 209 47 8 chr4 69150447 69150587 -115138075 - AluJo SINE Alu -44 268 135 356 0 23 0 chr4 69150587 69150631 -115138031 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 1388 209 47 8 chr4 69150631 69150748 -115137914 - AluJo SINE Alu -177 135 1 183 129 0 0 chr4 69151065 69151096 -115137566 + (T)n Simple_repeat Simple_repeat 1 31 0 797 250 75 5 chr4 69151773 69151985 -115136677 - MER34 LTR ERV1 0 542 316 790 183 41 6 chr4 69151994 69152163 -115136499 - Tigger1 DNA MER2_type -1 2417 2243 571 133 0 0 chr4 69152163 69152246 -115136416 + AluS SINE Alu 1 83 -229 2283 104 0 3 chr4 69152907 69153206 -115135456 + AluSc SINE Alu 1 298 -11 1947 136 3 27 chr4 69153265 69153566 -115135096 + AluSx SINE Alu 1 294 -18 207 0 0 0 chr4 69154035 69154058 -115134604 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1255 196 0 5 chr4 69154066 69154275 -115134387 - AluJo SINE Alu -33 279 72 1661 204 45 56 chr4 69154659 69155105 -115133557 - LTR47B LTR ERVL -2 441 1 296 154 0 0 chr4 69155551 69155603 -115133059 - MER82 DNA MER2_type -398 255 204 231 148 111 0 chr4 69155596 69155650 -115133012 + MER82 DNA MER2_type 143 202 -451 * 1257 142 27 4 chr4 69155700 69155925 -115132737 + Tigger1 DNA MER2_type 1 230 -2188 27 29 0 0 chr4 69155929 69155963 -115132699 + AT_rich Low_complexity Low_complexity 1 34 0 677 225 0 0 chr4 69155968 69156097 -115132565 - FLAM_C SINE Alu -14 129 1 8589 123 39 3 chr4 69156098 69157548 -115131114 + Tigger1 DNA MER2_type 218 1719 -699 1704 121 16 62 chr4 69157539 69157689 -115130973 + Tigger1 DNA MER2_type 2079 2209 -209 * 2163 92 0 0 chr4 69157689 69157992 -115130670 - AluSc SINE Alu 0 311 9 1704 121 16 62 chr4 69157992 69158162 -115130500 + Tigger1 DNA MER2_type 2209 2385 -33 236 191 0 0 chr4 69158213 69158255 -115130407 - Alu SINE Alu -182 120 79 510 188 10 0 chr4 69158300 69158396 -115130266 + MER34 LTR ERV1 446 542 0 195 42 0 0 chr4 69159362 69159386 -115129276 + (A)n Simple_repeat Simple_repeat 1 24 0 1771 146 159 73 chr4 69159692 69160157 -115128505 - MLT1D LTR MaLR 0 505 1 2016 93 19 11 chr4 69160323 69160593 -115128069 + AluSp SINE Alu 1 272 -41 2243 117 0 3 chr4 69160844 69161142 -115127520 + AluSx SINE Alu 1 297 -15 1457 150 158 0 chr4 69161232 69161492 -115127170 - AluSp SINE Alu 0 303 3 204 67 0 0 chr4 69161633 69161663 -115126999 + (T)n Simple_repeat Simple_repeat 1 30 0 266 155 5 0 chr4 69161875 69161930 -115126732 - Alu SINE Alu -257 45 6 707 238 132 40 chr4 69162040 69162419 -115126243 - L1MC4 LINE L1 -4 8038 7625 944 264 62 31 chr4 69162442 69162960 -115125702 - L1MC4 LINE L1 -32 8010 7477 1420 153 3 110 chr4 69163114 69163414 -115125248 - AluJo SINE Alu -44 268 1 1871 158 0 35 chr4 69163418 69163728 -115124934 - AluJb SINE Alu -11 301 3 595 246 36 12 chr4 69163806 69163973 -115124689 + MER69A DNA AcHobo 5 175 -2 780 148 16 0 chr4 69164654 69164782 -115123880 + FAM SINE Alu 41 170 -15 2012 87 25 11 chr4 69165485 69165761 -115122901 - AluSg SINE Alu -30 280 1 909 195 0 13 chr4 69166036 69166232 -115122430 + FRAM SINE Alu 1 176 0 2163 126 13 0 chr4 69167033 69167205 -115121457 - AluSx SINE Alu -6 306 127 2372 62 3 0 chr4 69167205 69167497 -115121165 - AluY SINE Alu -18 293 1 2163 126 13 0 chr4 69167497 69167626 -115121036 - AluSx SINE Alu -185 127 1 25 31 0 0 chr4 69169229 69169261 -115119401 + AT_rich Low_complexity Low_complexity 1 32 0 470 243 49 21 chr4 69173137 69173281 -115115381 - MLT1A2 LTR MaLR -12 362 215 756 203 28 7 chr4 69173344 69173487 -115115175 - FRAM SINE Alu -30 146 1 387 181 205 8 chr4 69173490 69173617 -115115045 - MLT1A2 LTR MaLR -213 152 1 1642 172 9 35 chr4 69174267 69174586 -115114076 - AluJo SINE Alu 0 312 2 210 71 0 0 chr4 69174913 69174941 -115113721 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 193 319 37 59 chr4 69176751 69176886 -115111776 + MIR SINE MIR 81 212 -50 311 248 105 9 chr4 69177166 69177271 -115111391 - MIR SINE MIR -70 192 78 384 77 0 0 chr4 69177591 69177643 -115111019 + (CA)n Simple_repeat Simple_repeat 1 52 0 189 0 0 0 chr4 69177708 69177729 -115110933 + (TA)n Simple_repeat Simple_repeat 2 22 0 2366 83 6 3 chr4 69177729 69178034 -115110628 - AluSp SINE Alu -4 309 1 196 410 16 0 chr4 69178131 69178192 -115110470 - L2 LINE L2 -93 3179 3118 705 212 0 15 chr4 69179044 69179181 -115109481 - FLAM_A SINE Alu -1 141 7 309 140 0 18 chr4 69179907 69179964 -115108698 - LTR65 LTR ERV1 -6 663 608 216 0 0 0 chr4 69180397 69180421 -115108241 + (A)n Simple_repeat Simple_repeat 1 24 0 312 272 156 29 chr4 69180898 69181071 -115107591 + MIR3 SINE MIR 7 201 -7 1891 96 118 11 chr4 69181320 69181591 -115107071 - AluSg SINE Alu -10 300 1 233 291 68 26 chr4 69181835 69181952 -115106710 + L2 LINE L2 3191 3312 -1 959 170 6 12 chr4 69182038 69182203 -115106459 + AluJb SINE Alu 135 298 -14 2163 109 0 3 chr4 69182253 69182571 -115106091 - AluSx SINE Alu 0 317 1 411 243 71 64 chr4 69182573 69182713 -115105949 - MIR SINE MIR -38 224 84 1623 142 27 40 chr4 69182729 69183025 -115105637 - AluJb SINE Alu 0 312 21 710 185 0 15 chr4 69183209 69183339 -115105323 - FRAM SINE Alu -5 171 44 525 161 0 43 chr4 69183369 69183462 -115105200 + FLAM_A SINE Alu 1 89 -53 2580 55 0 0 chr4 69183860 69184167 -115104495 - AluY SINE Alu -4 307 1 200 143 29 0 chr4 69184431 69184466 -115104196 - MIR SINE MIR -71 191 156 2357 87 3 0 chr4 69184696 69184995 -115103667 - AluSx SINE Alu -12 300 1 653 306 120 29 chr4 69185333 69185742 -115102920 - MLT1J LTR MaLR -29 482 37 1142 240 37 0 chr4 69185821 69186067 -115102595 - MIR SINE MIR -1 261 7 825 261 74 0 chr4 69186131 69186346 -115102316 - MIR SINE MIR -19 243 13 1545 152 105 7 chr4 69186467 69186763 -115101899 + MER1B DNA MER1_type 15 339 0 2014 117 0 7 chr4 69187622 69187895 -115100767 + AluSq SINE Alu 1 271 -42 2148 116 3 0 chr4 69188243 69188535 -115100127 - AluSx SINE Alu -18 294 2 2277 101 0 13 chr4 69188536 69188842 -115099820 - AluSx SINE Alu -10 302 1 1694 213 99 8 chr4 69189846 69190396 -115098266 - MER82 DNA MER2_type -6 647 2 574 199 122 0 chr4 69190695 69190826 -115097836 + MER21B LTR ERV1 1 147 -716 431 141 14 0 chr4 69190827 69190898 -115097764 + FLAM SINE Alu 54 125 -18 234 164 0 36 chr4 69193269 69193324 -115095338 + A-rich Low_complexity Low_complexity 3 55 0 660 86 32 0 chr4 69193445 69193538 -115095124 + AluSg/x SINE Alu 191 286 -24 2082 158 55 25 chr4 69193615 69194019 -115094643 + MSTC LTR MaLR 1 416 -12 2011 32 48 4 chr4 69194097 69194347 -115094315 + AluY SINE Alu 25 285 -26 1040 122 5 51 chr4 69194468 69194665 -115093997 - Tigger1 DNA MER2_type -153 2265 2078 9515 150 20 9 chr4 69194678 69196366 -115092296 - Tigger1 DNA MER2_type -712 1706 1 1193 214 11 4 chr4 69196370 69196636 -115092026 - MER34 LTR ERV1 -264 278 11 237 211 0 0 chr4 69196687 69196744 -115091918 + T-rich Low_complexity Low_complexity 1 57 0 4633 39 1 2 chr4 69197247 69198488 -115090174 - L1PA5 LINE L1 -3 6151 4803 388 273 100 89 chr4 69200580 69201009 -115087653 - HAL1 LINE L1 -1236 1271 838 469 143 0 0 chr4 69201507 69201577 -115087085 + AluJ/FLAM SINE Alu 1 70 -242 22 0 0 0 chr4 69201886 69201908 -115086754 + AT_rich Low_complexity Low_complexity 1 22 0 472 317 82 29 chr4 69201923 69202131 -115086531 - MIR SINE MIR -11 251 33 201 309 12 48 chr4 69202350 69202434 -115086228 - MIR SINE MIR -107 101 21 2060 135 10 3 chr4 69202821 69203125 -115085537 - AluSx SINE Alu -6 306 1 258 32 0 0 chr4 69203581 69203612 -115085050 + (T)n Simple_repeat Simple_repeat 1 31 0 2201 96 0 10 chr4 69204476 69204769 -115083893 + AluSq SINE Alu 1 290 -23 244 197 66 33 chr4 69207567 69207628 -115081034 - L2 LINE L2 -1 3312 3250 568 242 50 18 chr4 69208174 69208393 -115080269 - L1ME4a LINE L1 -273 6346 6121 2253 81 0 7 chr4 69208890 69209224 -115079438 + AluY SINE Alu 1 332 0 383 314 93 25 chr4 69209255 69209535 -115079127 - L1ME4a LINE L1 -1218 5426 5128 783 263 102 53 chr4 69209556 69210068 -115078594 - L2 LINE L2 -6 3307 2767 2024 145 0 13 chr4 69210247 69210551 -115078111 + AluSq SINE Alu 1 300 -13 255 186 192 57 chr4 69210989 69211166 -115077496 - L1ME4a LINE L1 -2157 4487 4287 439 325 30 15 chr4 69211334 69211534 -115077128 - L1ME4a LINE L1 -2605 4039 3837 442 299 76 15 chr4 69211947 69212144 -115076518 + L3 LINE CR1 1297 1505 -72 6389 203 122 15 chr4 69212278 69213801 -115074861 - MER52A LTR ERV1 -12 1743 58 229 361 41 8 chr4 69214797 69214919 -115073743 - MIR SINE MIR -1 261 136 252 331 62 31 chr4 69215138 69215268 -115073394 - MIR SINE MIR -128 134 1 447 288 14 48 chr4 69215425 69215571 -115073091 + MIR SINE MIR 7 147 -115 436 219 0 0 chr4 69215578 69215660 -115073002 - L2 LINE L2 -1 3312 3231 777 216 21 38 chr4 69215668 69215955 -115072707 - L1ME4a LINE L1 -4870 1672 1391 311 291 13 0 chr4 69216016 69216095 -115072567 - L2 LINE L2 -230 3083 3004 1023 283 72 45 chr4 69216154 69216638 -115072024 - L2 LINE L2 -438 2876 2380 231 36 0 0 chr4 69216887 69216915 -115071747 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr4 69217215 69217236 -115071426 + AT_rich Low_complexity Low_complexity 1 21 0 255 323 104 0 chr4 69219461 69219557 -115069105 - MIR SINE MIR -73 135 30 1152 184 0 29 chr4 69221439 69221542 -115067120 - L1MC1 LINE L1 -84 6249 6145 1988 173 16 16 chr4 69221542 69221907 -115066755 - MLT1A1 LTR MaLR 0 365 1 1152 184 0 29 chr4 69221907 69222042 -115066620 - L1MC1 LINE L1 -188 6145 6018 216 189 0 0 chr4 69223717 69223754 -115064908 + (CTAA)n Simple_repeat Simple_repeat 3 39 0 531 253 36 10 chr4 69224930 69225198 -115063464 - MLT1J2 LTR MaLR -131 319 3 402 241 188 9 chr4 69225770 69225882 -115062780 - L2 LINE L2 0 3272 3141 2268 104 3 0 chr4 69226068 69226366 -115062296 + AluSq SINE Alu 1 299 -14 21 0 0 0 chr4 69226825 69226846 -115061816 + AT_rich Low_complexity Low_complexity 1 21 0 2008 160 9 9 chr4 69226908 69227252 -115061410 - MER2 DNA MER2_type 0 344 1 349 306 0 0 chr4 69227442 69227540 -115061122 - L2 LINE L2 -6 3307 3210 926 221 83 4 chr4 69227560 69227910 -115060752 - L2 LINE L2 -229 3084 2714 852 201 127 4 chr4 69228872 69229116 -115059546 + ORSL DNA AcHobo 2 275 0 2147 105 20 3 chr4 69229272 69229566 -115059096 + AluSq SINE Alu 1 299 -14 753 150 15 15 chr4 69229574 69229707 -115058955 + FLAM_C SINE Alu 1 133 0 1149 284 3 128 chr4 69229777 69230105 -115058557 - AluSx SINE Alu -15 287 1 303 284 25 163 chr4 69230291 69230611 -115058051 - L2 LINE L2 -10 3262 2987 1069 184 11 5 chr4 69232437 69232627 -115056035 + MLT1C LTR MaLR 277 467 0 591 243 186 69 chr4 69233208 69233542 -115055120 + MLT1J1 LTR MaLR 53 425 -21 201 39 0 0 chr4 69233568 69233594 -115055068 + (CA)n Simple_repeat Simple_repeat 1 26 0 229 292 62 0 chr4 69233635 69233700 -115054962 - MIR3 SINE MIR -8 200 132 * 274 407 36 0 chr4 69233694 69233861 -115054801 + L2 LINE L2 2712 2884 -430 575 269 8 8 chr4 69234142 69234272 -115054390 - L2 LINE L2 -9 3263 3134 214 309 31 10 chr4 69234450 69234547 -115054115 - MIR SINE MIR -4 258 160 298 326 0 0 chr4 69234871 69234957 -115053705 + CT-rich Low_complexity Low_complexity 3 88 0 245 288 175 0 chr4 69234982 69235062 -115053600 - MIR SINE MIR -109 153 60 851 152 122 0 chr4 69235914 69236078 -115052584 - MER3 DNA MER1_type -25 184 1 565 322 142 31 chr4 69236112 69236962 -115051700 - L2 LINE L2 -887 2427 1483 405 314 87 10 chr4 69238142 69238405 -115050257 + L1ME LINE L1 4212 4453 -1693 2201 103 7 0 chr4 69238405 69238695 -115049967 - AluSq SINE Alu -21 292 1 405 314 87 10 chr4 69238695 69239027 -115049635 + L1ME LINE L1 4453 4853 -1293 417 311 44 14 chr4 69239418 69239711 -115048951 + L1ME LINE L1 5266 5567 -597 234 282 18 36 chr4 69241535 69241645 -115047017 + L1ME LINE L1 5629 5736 -385 1033 235 41 63 chr4 69242402 69242747 -115045915 + LTR37A LTR ERV1 20 356 -70 2146 116 13 3 chr4 69242747 69243049 -115045613 + AluSq SINE Alu 3 307 -6 1033 235 41 63 chr4 69243049 69243115 -115045547 + LTR37A LTR ERV1 356 422 -4 2324 97 0 0 chr4 69243303 69243614 -115045048 - AluY SINE Alu 0 311 1 813 241 17 112 chr4 69243784 69244239 -115044423 + MER31-int LTR ERV1 3651 4025 -911 303 214 107 80 chr4 69244425 69244537 -115044125 + LTR37A LTR ERV1 50 164 -262 1671 188 0 7 chr4 69244543 69244825 -115043837 + AluJb SINE Alu 13 292 -20 550 175 43 99 chr4 69244846 69244978 -115043684 + LTR37A LTR ERV1 228 345 -81 1875 135 36 60 chr4 69244978 69245362 -115043300 - THE1C LTR MaLR 0 375 1 550 175 43 99 chr4 69245362 69245440 -115043222 + LTR37A LTR ERV1 345 426 0 604 189 176 9 chr4 69245509 69245742 -115042920 + Charlie2b DNA MER1_type 1666 1937 -845 2421 77 0 7 chr4 69245749 69246049 -115042613 - AluY SINE Alu -13 298 1 2177 166 37 58 chr4 69246057 69246521 -115042141 - MLT1C LTR MaLR -13 454 1 181 361 37 19 chr4 69247863 69247971 -115040691 + MIR SINE MIR 21 130 -78 401 285 61 30 chr4 69248139 69248304 -115040358 - MIR SINE MIR -32 230 61 1990 132 3 3 chr4 69248396 69248691 -115039971 - AluSc SINE Alu -14 295 1 442 67 27 0 chr4 69250837 69250912 -115037750 + (CA)n Simple_repeat Simple_repeat 2 78 0 334 220 189 15 chr4 69251267 69251399 -115037263 - MER103 DNA DNA -10 156 2 764 201 0 0 chr4 69251709 69251843 -115036819 - FLAM_C SINE Alu -9 134 1 206 234 0 0 chr4 69251888 69251935 -115036727 + GA-rich Low_complexity Low_complexity 2 48 0 380 276 0 0 chr4 69252117 69252204 -115036458 - MER117 DNA MER1_type -109 88 2 1264 213 89 20 chr4 69252329 69252842 -115035820 + MLT1F LTR MaLR 1 541 -1 898 180 19 6 chr4 69252987 69253148 -115035514 - MER58B DNA MER1_type -2 339 177 2999 189 24 25 chr4 69253148 69253842 -115034820 - Tigger7 DNA MER2_type 0 2587 1 806 176 97 0 chr4 69253842 69254003 -115034659 - MER58B DNA MER1_type -163 178 2 256 238 32 0 chr4 69254013 69254076 -115034586 + MLT1J LTR MaLR 56 120 -391 189 171 0 0 chr4 69255103 69255138 -115033524 + CT-rich Low_complexity Low_complexity 6 40 0 183 280 20 0 chr4 69256111 69256161 -115032501 - L2 LINE L2 -12 3260 3210 181 287 92 0 chr4 69256146 69256233 -115032429 - MIR SINE MIR -60 202 108 * 2228 86 3 3 chr4 69256595 69256885 -115031777 - AluSc SINE Alu -19 290 1 752 267 57 8 chr4 69257829 69258076 -115030586 + MIR SINE MIR 2 260 -2 21 0 0 0 chr4 69258153 69258174 -115030488 + AT_rich Low_complexity Low_complexity 1 21 0 1706 165 14 21 chr4 69258393 69258678 -115029984 + AluJo SINE Alu 10 292 -20 2034 185 22 5 chr4 69258879 69259289 -115029373 - L1MB5 LINE L1 -8 6166 5750 1864 177 0 14 chr4 69259371 69259727 -115028935 - L1PA16 LINE L1 -16 6150 5800 369 296 0 0 chr4 69259727 69259825 -115028837 - L1 LINE L1 -2499 3647 3550 * 1925 119 13 3 chr4 69259810 69260112 -115028550 - L1P5 LINE L1 -338 6521 6217 2255 104 51 25 chr4 69260322 69260677 -115027985 - THE1B LTR MaLR 0 364 1 13024 214 29 36 chr4 69260680 69261922 -115026740 - L1P5 LINE L1 -663 6196 4946 2420 77 0 7 chr4 69261922 69262221 -115026441 - AluY SINE Alu -14 297 1 13024 214 29 36 chr4 69262221 69265786 -115022876 - L1P5 LINE L1 -1913 4946 1336 1140 212 7 0 chr4 69265772 69266145 -115022517 - L1P5 LINE L1 -5286 1563 3 * 358 268 10 41 chr4 69266206 69266303 -115022359 + L2 LINE L2 3179 3272 0 554 233 62 0 chr4 69266351 69266480 -115022182 - LTR33 LTR ERVL -370 151 15 25 0 0 0 chr4 69267095 69267120 -115021542 + AT_rich Low_complexity Low_complexity 1 25 0 2493 96 0 0 chr4 69267335 69267648 -115021014 + AluSp SINE Alu 1 313 0 576 275 90 11 chr4 69267840 69268018 -115020644 + MIR SINE MIR 71 262 0 551 197 115 44 chr4 69268601 69268784 -115019878 + LTR16C LTR ERVL 296 491 0 2345 93 0 0 chr4 69268808 69269109 -115019553 - AluY SINE Alu -10 301 1 235 301 115 93 chr4 69269227 69269645 -115019017 - L2 LINE L2 -16 3256 2830 2078 127 19 10 chr4 69269739 69270084 -115018578 - AluSq SINE Alu 0 350 3 435 315 21 0 chr4 69270166 69270309 -115018353 - MIR SINE MIR -6 256 111 1873 101 97 4 chr4 69272857 69273152 -115015510 + AluSg SINE Alu 3 310 0 296 305 106 52 chr4 69273223 69273780 -115014882 + HAL1 LINE L1 1116 1702 -805 466 228 0 0 chr4 69273888 69273980 -115014682 - L2 LINE L2 0 3313 3222 24 0 0 0 chr4 69274060 69274084 -115014578 + AT_rich Low_complexity Low_complexity 1 24 0 2344 205 68 34 chr4 69274358 69274913 -115013749 + MLT1E2 LTR MaLR 52 625 -1 2980 85 7 7 chr4 69274923 69275335 -115013327 + L1PB1 LINE L1 5380 5791 -360 328 167 13 13 chr4 69275335 69275413 -115013249 + (TA)n Simple_repeat Simple_repeat 1 78 0 2610 88 10 23 chr4 69275424 69275452 -115013210 + L1PB1 LINE L1 5773 5800 -351 252 0 0 0 chr4 69275452 69275480 -115013182 + (CA)n Simple_repeat Simple_repeat 2 29 0 2610 88 10 23 chr4 69275480 69275835 -115012827 + L1PB1 LINE L1 5800 6151 0 24 0 0 0 chr4 69275946 69275970 -115012692 + AT_rich Low_complexity Low_complexity 1 24 0 33 0 0 0 chr4 69276320 69276353 -115012309 + AT_rich Low_complexity Low_complexity 1 33 0 230 336 14 70 chr4 69276571 69276714 -115011948 + MIR SINE MIR 16 150 -58 21 36 0 0 chr4 69277028 69277056 -115011606 + AT_rich Low_complexity Low_complexity 1 28 0 247 173 29 58 chr4 69277122 69277261 -115011401 + (TTATA)n Simple_repeat Simple_repeat 3 137 0 1881 155 25 6 chr4 69277285 69277607 -115011055 - MLT2D LTR ERVL -86 328 1 927 136 39 0 chr4 69278958 69279107 -115009555 - MER44D DNA MER2_type -38 567 413 738 198 89 140 chr4 69279107 69279593 -115009069 + MER52A LTR ERV1 1 1243 -187 1795 182 21 43 chr4 69279846 69280220 -115008442 - MER44D DNA MER2_type -183 422 2 265 393 33 16 chr4 69280269 69280391 -115008271 + L2 LINE L2 3141 3264 -8 2124 228 104 13 chr4 69280944 69281493 -115007169 - MER77 LTR ERV1 -4 601 3 325 365 64 0 chr4 69281523 69281726 -115006936 + MER102b DNA MER1_type 114 329 -12 2380 89 0 0 chr4 69283709 69284013 -115004649 - AluY SINE Alu -7 304 1 1135 200 68 20 chr4 69284990 69285240 -115003422 - AluJo SINE Alu -37 275 14 2298 71 0 0 chr4 69285258 69285575 -115003087 - AluY SINE Alu 0 317 1 21 0 0 0 chr4 69285579 69285600 -115003062 + AT_rich Low_complexity Low_complexity 1 21 0 346 309 65 0 chr4 69285993 69286116 -115002546 - MIR SINE MIR -61 201 71 425 190 10 0 chr4 69286329 69286429 -115002233 + CT-rich Low_complexity Low_complexity 2 102 0 21 71 0 0 chr4 69287066 69287108 -115001554 + AT_rich Low_complexity Low_complexity 1 42 0 1193 133 0 0 chr4 69287290 69287463 -115001199 - FRAM SINE Alu -4 172 1 340 191 0 0 chr4 69288007 69288070 -115000592 - MER94 DNA DNA -68 66 4 196 216 0 0 chr4 69288793 69288830 -114999832 - L2 LINE L2 -15 3298 3262 418 261 17 17 chr4 69289911 69290026 -114998636 + MIR SINE MIR 100 214 -48 1844 173 158 45 chr4 69290285 69290752 -114997910 - MLT2B1 LTR ERVL 0 520 1 228 158 53 13 chr4 69291229 69291305 -114997357 - L1ME1 LINE L1 -5 6161 6083 5571 181 23 2 chr4 69291309 69292317 -114996345 + L1M1 LINE L1 6 1034 -6531 5873 74 29 3 chr4 69292317 69293077 -114995585 + LTR17 LTR ERV1 1 780 0 1394 78 0 0 chr4 69293077 69293257 -114995405 + HERV17 LTR ERV1 1 180 -8446 * 5530 48 3 12 chr4 69293255 69293980 -114994682 + HERV17 LTR ERV1 1147 1864 -6762 * 26814 48 3 3 chr4 69293977 69297367 -114991295 + HERV17 LTR ERV1 1679 5067 -3559 13186 68 2 0 chr4 69297358 69299080 -114989582 + HERV17 LTR ERV1 6902 8626 0 * 5850 60 1 81 chr4 69299080 69299928 -114988734 + LTR17 LTR ERV1 1 780 0 14628 167 28 7 chr4 69299928 69300888 -114987774 + L1M1 LINE L1 1031 1969 -5596 2210 121 3 0 chr4 69300888 69301185 -114987477 - AluSq SINE Alu -15 298 1 14628 167 28 7 chr4 69301185 69305003 -114983659 + L1M1 LINE L1 1969 5910 -1655 1038 237 111 44 chr4 69305019 69305361 -114983301 - MLT1A1 LTR MaLR 0 365 1 416 260 71 58 chr4 69305437 69305591 -114983071 + MLT1I LTR MaLR 245 400 -9 1966 143 0 35 chr4 69306006 69306343 -114982319 - AluSg SINE Alu 0 326 1 1346 232 41 48 chr4 69306580 69306973 -114981689 - MLT1B LTR MaLR 0 390 1 1792 196 28 6 chr4 69307063 69307420 -114981242 + MLT1A1 LTR MaLR 1 365 0 398 222 35 64 chr4 69308127 69308298 -114980364 + Charlie7 DNA MER1_type 53 218 -2394 778 289 25 21 chr4 69308308 69308547 -114980115 + MIR SINE MIR 15 254 -8 430 283 33 20 chr4 69308554 69308706 -114979956 + Charlie7 DNA MER1_type 210 363 -2249 1855 170 0 26 chr4 69308876 69309182 -114979480 - AluSx SINE Alu -12 300 3 2622 86 14 0 chr4 69310799 69311149 -114977513 - THE1A LTR MaLR 0 355 1 10693 96 43 4 chr4 69311149 69312670 -114975992 - THE1A-int LTR MaLR 0 1580 1 2522 97 3 22 chr4 69312670 69313032 -114975630 - THE1A LTR MaLR 0 355 1 216 0 0 0 chr4 69314198 69314222 -114974440 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 1368 202 18 22 chr4 69314228 69314500 -114974162 - AluJo SINE Alu -41 271 1 308 281 56 0 chr4 69314500 69314589 -114974073 - L2 LINE L2 -10 3303 3210 444 150 60 12 chr4 69314737 69314904 -114973758 + (TA)n Simple_repeat Simple_repeat 2 176 0 335 86 60 26 chr4 69314899 69315015 -114973647 + (TATAA)n Simple_repeat Simple_repeat 5 124 0 * 359 196 52 17 chr4 69315043 69315216 -114973446 + (TA)n Simple_repeat Simple_repeat 1 179 0 29 0 0 0 chr4 69315216 69315245 -114973417 + AT_rich Low_complexity Low_complexity 1 29 0 271 182 66 25 chr4 69315347 69315468 -114973194 + (TA)n Simple_repeat Simple_repeat 1 126 0 984 238 55 0 chr4 69316014 69316249 -114972413 + MER44D DNA MER2_type 3 250 -455 708 111 146 58 chr4 69316252 69316423 -114972239 - MER4C LTR ERV1 -3 462 277 2192 113 34 77 chr4 69316441 69316883 -114971779 - MER4A LTR ERV1 -241 423 1 2434 148 67 21 chr4 69316883 69317349 -114971313 + MER44D DNA MER2_type 247 605 0 972 214 20 46 chr4 69317349 69317650 -114971012 + Charlie2a DNA MER1_type 1710 2002 -860 1192 253 151 21 chr4 69317662 69318179 -114970483 - MLT1E LTR MaLR -8 585 2 201 167 28 0 chr4 69318471 69318507 -114970155 + (CA)n Simple_repeat Simple_repeat 2 38 0 476 239 129 6 chr4 69319301 69319464 -114969198 - L2 LINE L2 0 3313 3131 1191 233 74 177 chr4 69322148 69322308 -114966354 - L2 LINE L2 -251 3062 2887 763 176 192 6 chr4 69322308 69322490 -114966172 + MER20 DNA MER1_type 4 219 0 1191 233 74 177 chr4 69322490 69322714 -114965948 - L2 LINE L2 -426 2887 2641 13993 32 6 0 chr4 69322714 69325174 -114963488 - L1PA4 LINE L1 -8 6147 3677 1046 8 0 8 chr4 69325174 69325302 -114963360 + L1PA4 LINE L1 3566 3692 -2454 1191 233 74 177 chr4 69325302 69325697 -114962965 - L2 LINE L2 -670 2643 2243 23 0 0 0 chr4 69325943 69325966 -114962696 + AT_rich Low_complexity Low_complexity 1 23 0 303 215 35 81 chr4 69326130 69326302 -114962360 + MER104 DNA Tc2 16 179 -1 723 226 186 47 chr4 69326753 69327054 -114961608 + L2 LINE L2 2468 2810 -504 992 166 74 51 chr4 69327693 69327749 -114960913 + LTR9B LTR ERV1 423 476 -168 2078 117 0 7 chr4 69327749 69328049 -114960613 + AluSx SINE Alu 1 298 -14 992 166 74 51 chr4 69328049 69328209 -114960453 + LTR9B LTR ERV1 476 644 0 22 0 0 0 chr4 69328580 69328602 -114960060 + AT_rich Low_complexity Low_complexity 1 22 0 399 307 80 23 chr4 69328941 69329117 -114959545 + L3b LINE CR1 1395 1580 -3 241 183 217 0 chr4 69329309 69329369 -114959293 + Tigger5 DNA MER2_type 2251 2323 0 403 283 101 0 chr4 69329436 69329574 -114959088 + L2 LINE L2 3116 3267 -5 774 246 71 29 chr4 69329719 69329904 -114958758 + MIR SINE MIR 1 200 -62 1174 201 25 110 chr4 69329904 69330303 -114958359 + MLT1A1 LTR MaLR 1 365 0 774 246 71 29 chr4 69330303 69330357 -114958305 + MIR SINE MIR 200 250 -12 184 222 0 0 chr4 69330481 69330517 -114958145 + L3 LINE CR1 1506 1541 -36 22 35 0 0 chr4 69330796 69330825 -114957837 + AT_rich Low_complexity Low_complexity 1 29 0 198 0 0 0 chr4 69331277 69331299 -114957363 + (T)n Simple_repeat Simple_repeat 1 22 0 882 238 0 0 chr4 69332866 69333034 -114955628 - MER5A DNA MER1_type -4 185 18 278 286 174 82 chr4 69333366 69333660 -114955002 - L2 LINE L2 -404 2910 2590 485 155 24 2 chr4 69334129 69334225 -114954437 + MLT1B LTR MaLR 276 380 -2 493 182 227 0 chr4 69334239 69334371 -114954291 + MLT1E3 LTR MaLR 458 619 -5 6563 64 5 7 chr4 69334387 69335247 -114953415 + L1PA8 LINE L1 5308 6165 -7 22 80 0 0 chr4 69335632 69335682 -114952980 + AT_rich Low_complexity Low_complexity 1 50 0 2485 62 0 10 chr4 69335940 69336249 -114952413 + AluY SINE Alu 1 306 -5 1450 123 76 7 chr4 69336335 69336612 -114952050 - L1MA8 LINE L1 -3 6288 5993 21 0 0 0 chr4 69337132 69337153 -114951509 + AT_rich Low_complexity Low_complexity 1 21 0 542 213 87 22 chr4 69337940 69338123 -114950539 - LTR67 LTR ERVL -3 554 360 213 361 45 15 chr4 69338587 69338720 -114949942 + MIR SINE MIR 17 153 -109 272 213 38 36 chr4 69338868 69339007 -114949655 - L1MC5 LINE L1 -17 8025 7807 313 244 110 63 chr4 69339054 69339480 -114949182 - L1MC4 LINE L1 -568 7474 6962 287 237 13 0 chr4 69339567 69339643 -114949019 - L1MC4 LINE L1 -1040 7002 6926 32 0 0 0 chr4 69339720 69339752 -114948910 + AT_rich Low_complexity Low_complexity 1 32 0 1496 175 152 6 chr4 69340144 69340459 -114948203 - MLT1A1 LTR MaLR -4 361 1 37707 77 13 1 chr4 69340786 69346840 -114941822 + L1PA5 LINE L1 11 6140 -14 4428 130 271 89 chr4 69347269 69348703 -114939959 - pTR5 LTR ERV1 0 2438 743 528 296 49 55 chr4 69349888 69350361 -114938301 - Charlie4 DNA MER1_type -862 1099 630 631 227 78 0 chr4 69351056 69351210 -114937452 - MIR SINE MIR -88 174 9 324 157 29 0 chr4 69351537 69351607 -114937055 - THE1C LTR MaLR 0 364 293 27071 111 13 14 chr4 69351632 69357304 -114931358 - L1PA7 LINE L1 -14 6455 761 4284 82 44 6 chr4 69357304 69358381 -114930281 + MER11A LTR ERVK 2 1266 0 4661 129 26 0 chr4 69358381 69359120 -114929542 - L1PA7 LINE L1 -5696 765 8 1035 117 0 23 chr4 69359132 69359303 -114929359 - THE1C LTR MaLR -60 315 149 950 110 0 120 chr4 69359324 69359524 -114929138 - THE1C LTR MaLR -199 176 1 9413 128 49 12 chr4 69359524 69361045 -114927617 - THE1C-int LTR MaLR 0 1580 4 2403 138 8 13 chr4 69361048 69361425 -114927237 - THE1C LTR MaLR 0 375 1 822 305 58 27 chr4 69361955 69362388 -114926274 + L2 LINE L2 2339 2836 -478 257 194 97 39 chr4 69362409 69362512 -114926150 - MLT1I LTR MaLR -25 384 276 23 0 0 0 chr4 69362571 69362594 -114926068 + AT_rich Low_complexity Low_complexity 1 23 0 483 242 194 13 chr4 69362712 69363022 -114925640 - L1M4 LINE L1 -1377 4769 4404 21 0 0 0 chr4 69363121 69363142 -114925520 + AT_rich Low_complexity Low_complexity 1 21 0 184 281 125 0 chr4 69363935 69363999 -114924663 + L2 LINE L2 262 333 -2981 189 0 0 0 chr4 69365390 69365411 -114923251 + (ATG)n Simple_repeat Simple_repeat 3 23 0 575 191 69 0 chr4 69365561 69365734 -114922928 - L1MA8 LINE L1 -10 6281 6097 1696 178 43 0 chr4 69365875 69366151 -114922511 - AluSx SINE Alu -24 288 1 366 78 47 0 chr4 69366151 69366215 -114922447 - L1MA8 LINE L1 -178 6113 6047 25 0 0 0 chr4 69366327 69366352 -114922310 + AT_rich Low_complexity Low_complexity 1 25 0 252 0 0 0 chr4 69367372 69367400 -114921262 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 243 61 0 0 chr4 69368683 69368716 -114919946 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 20854 97 6 1 chr4 69368717 69372530 -114916132 - L1PA7 LINE L1 -16 6453 2625 27493 71 12 2 chr4 69372729 69377413 -114911249 - L1PA6 LINE L1 0 6154 1427 3209 158 26 0 chr4 69377411 69377957 -114910705 - L1PA6 LINE L1 -5576 570 11 * 10012 121 50 4 chr4 69378000 69379646 -114909016 - L1PA7 LINE L1 -4734 1727 5 352 241 210 12 chr4 69379982 69380144 -114908518 - MIR SINE MIR -64 198 5 659 250 98 29 chr4 69380553 69380757 -114907905 + MIR SINE MIR 45 262 0 197 65 32 0 chr4 69381475 69381506 -114907156 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 23 68 0 0 chr4 69381580 69381624 -114907038 + AT_rich Low_complexity Low_complexity 1 44 0 722 220 50 6 chr4 69382311 69382470 -114906192 - FRAM SINE Alu 0 166 1 288 350 0 0 chr4 69382961 69383058 -114905604 - MIR SINE MIR -90 172 76 485 135 52 0 chr4 69383067 69383163 -114905499 + MER89 LTR ERV1 1 101 -458 966 199 31 86 chr4 69383181 69383563 -114905099 - L1M4 LINE L1 -1077 5069 4709 180 0 0 0 chr4 69383575 69383595 -114905067 + (T)n Simple_repeat Simple_repeat 1 20 0 1499 221 6 8 chr4 69383779 69384141 -114904521 - L1M4 LINE L1 -1467 4679 4319 39898 76 5 7 chr4 69384148 69390309 -114898353 + L1PA5 LINE L1 11 6152 -2 1084 223 38 31 chr4 69390308 69390626 -114898036 - L1M4 LINE L1 -1812 4334 4015 * 6066 112 15 0 chr4 69390637 69391669 -114896993 - L1PA14 LINE L1 -2 6159 5123 4029 188 8 13 chr4 69391669 69392492 -114896170 + L1PA14 LINE L1 4284 5102 -1044 * 15562 89 15 24 chr4 69392491 69395547 -114893115 - L1PA7 LINE L1 -153 6001 2973 2153 214 58 45 chr4 69395542 69396350 -114892312 - L1M4 LINE L1 -2116 4030 3212 * 544 267 94 55 chr4 69396872 69397209 -114891453 - MLT1H LTR MaLR 0 549 136 207 0 0 0 chr4 69398260 69398283 -114890379 + (CA)n Simple_repeat Simple_repeat 2 24 0 14404 102 23 9 chr4 69398584 69400751 -114887911 - L1PA7 LINE L1 -1124 5022 2826 6545 74 14 0 chr4 69400752 69401851 -114886811 + L1PA7 LINE L1 5026 6145 -9 1889 133 10 13 chr4 69401935 69402235 -114886427 + AluSq SINE Alu 1 299 -14 439 242 11 0 chr4 69403107 69403202 -114885460 - MIR SINE MIR -116 146 51 34 72 0 0 chr4 69403729 69403798 -114884864 + AT_rich Low_complexity Low_complexity 1 69 0 1519 260 138 19 chr4 69403880 69403973 -114884689 - HAL1 LINE L1 -1117 1390 1309 2089 98 63 0 chr4 69403973 69404260 -114884402 - AluSp SINE Alu -8 305 1 1519 260 138 19 chr4 69404260 69404861 -114883801 - HAL1 LINE L1 -1198 1309 613 811 255 257 8 chr4 69404869 69405246 -114883416 - HAL1 LINE L1 -1992 515 45 1462 205 0 4 chr4 69405616 69405884 -114882778 + AluJo SINE Alu 1 267 -45 201 94 0 0 chr4 69405991 69406023 -114882639 + (TA)n Simple_repeat Simple_repeat 2 33 0 425 368 4 22 chr4 69406144 69406372 -114882290 + L3b LINE CR1 1107 1330 -253 270 333 56 0 chr4 69406543 69406633 -114882029 + MIR SINE MIR 68 162 -100 611 350 35 12 chr4 69406788 69407042 -114881620 + MIR SINE MIR 2 261 -1 207 269 86 86 chr4 69407083 69407280 -114881382 + L2 LINE L2 3112 3308 -5 292 258 252 13 chr4 69407448 69407607 -114881055 + MIR SINE MIR 66 262 0 247 181 111 56 chr4 69408228 69408300 -114880362 - MADE1 DNA Mariner 0 80 5 266 306 167 9 chr4 69408325 69408433 -114880229 + L2 LINE L2 3179 3303 -10 311 180 11 45 chr4 69409526 69409615 -114879047 + L1MC5 LINE L1 7832 7917 -44 245 353 0 15 chr4 69409889 69409957 -114878705 + MIR SINE MIR 16 82 -126 228 283 0 50 chr4 69410046 69410145 -114878517 + MIR SINE MIR 124 217 -45 2459 40 7 0 chr4 69412283 69412583 -114876079 - L1PA4 LINE L1 -87 6068 5767 290 26 26 0 chr4 69412811 69412850 -114875812 + (CA)n Simple_repeat Simple_repeat 2 41 0 1184 142 12 111 chr4 69413354 69413607 -114875055 + AluJb SINE Alu 84 311 -1 2394 152 52 72 chr4 69413796 69414311 -114874351 - MLT1D LTR MaLR 0 505 1 813 287 37 26 chr4 69414311 69414768 -114873894 + HAL1 LINE L1 1169 1630 -877 30 0 0 0 chr4 69415091 69415121 -114873541 + AT_rich Low_complexity Low_complexity 1 30 0 421 294 84 47 chr4 69415129 69415639 -114873023 + L1ME4a LINE L1 5492 6020 -101 3023 199 53 5 chr4 69415925 69416567 -114872095 - L1MD1 LINE L1 -24 6612 5940 2265 225 30 21 chr4 69416572 69417199 -114871463 - L1MD1 LINE L1 -1959 4581 3949 26 0 0 0 chr4 69417199 69417225 -114871437 + AT_rich Low_complexity Low_complexity 1 26 0 308 365 6 0 chr4 69417745 69417912 -114870750 + (CCA)n Simple_repeat Simple_repeat 1 168 0 3833 196 98 30 chr4 69418566 69418863 -114869799 - L1MD1 LINE L1 -3254 3286 3011 1790 181 3 0 chr4 69418863 69419162 -114869500 - AluJb SINE Alu -12 300 1 3833 196 98 30 chr4 69419162 69420528 -114868134 - L1MD1 LINE L1 -3529 3011 1532 1257 262 44 10 chr4 69420523 69420909 -114867753 - L1MD1 LINE L1 -5366 1174 776 * 646 256 39 0 chr4 69420933 69421089 -114867573 - L1MD1 LINE L1 -6360 180 19 320 317 35 21 chr4 69421103 69421245 -114867417 - L1MC4a LINE L1 -1913 5895 5752 1821 176 0 3 chr4 69421252 69421541 -114867121 - AluJb SINE Alu -24 288 1 745 291 21 3 chr4 69421607 69421892 -114866770 + MER46C DNA MER2_type 2 291 -47 312 298 76 39 chr4 69422096 69422505 -114866157 - L1ME4a LINE L1 -10 6111 5688 1807 139 31 64 chr4 69422617 69423005 -114865657 + THE1C LTR MaLR 1 375 0 2833 120 9 5 chr4 69423005 69423431 -114865231 + THE1C-int LTR MaLR 1 428 -1152 14403 62 4 0 chr4 69423431 69426056 -114862606 - L1PA6 LINE L1 0 6154 3516 9298 78 3 2 chr4 69426056 69427341 -114861321 + L1PA6 LINE L1 2254 3540 -2606 6955 144 33 7 chr4 69427369 69428494 -114860168 + THE1C-int LTR MaLR 427 1580 0 1813 135 34 62 chr4 69428494 69428880 -114859782 + THE1C LTR MaLR 1 375 0 1461 185 98 0 chr4 69429040 69429158 -114859504 + AluJo SINE Alu 3 108 -204 191 36 36 0 chr4 69429158 69429186 -114859476 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1461 185 98 0 chr4 69429186 69429343 -114859319 + AluJo SINE Alu 108 305 -7 242 340 45 32 chr4 69429365 69429521 -114859141 + MIR3 SINE MIR 42 199 -9 403 278 37 9 chr4 69429785 69429893 -114858769 + MIR SINE MIR 59 169 -93 1892 147 0 35 chr4 69429986 69430298 -114858364 - MER1B DNA MER1_type 0 339 39 30 0 0 0 chr4 69430460 69430490 -114858172 + AT_rich Low_complexity Low_complexity 1 30 0 9382 185 19 4 chr4 69430490 69433655 -114855007 - L1PB1 LINE L1 -3 6864 3657 2315 114 8 38 chr4 69433635 69434030 -114854632 - L1PB1 LINE L1 -5847 1016 634 * 1130 160 0 0 chr4 69434030 69434230 -114854432 - L1PB1 LINE L1 -6663 200 1 252 282 81 16 chr4 69435252 69435376 -114853286 + MIR SINE MIR 131 262 0 * 413 339 110 31 chr4 69435352 69435798 -114852864 - L2 LINE L2 -7 3306 2826 320 304 120 39 chr4 69436399 69436574 -114852088 - L1MC4a LINE L1 -1909 5899 5740 306 50 0 0 chr4 69436574 69436614 -114852048 + (TG)n Simple_repeat Simple_repeat 2 41 0 320 304 120 39 chr4 69436614 69436981 -114851681 - L1MC4a LINE L1 -2068 5740 5313 486 0 0 0 chr4 69437705 69437759 -114850903 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 1675 201 122 21 chr4 69439121 69439768 -114848894 - Charlie1a DNA MER1_type -68 1387 641 1192 257 27 19 chr4 69439759 69440132 -114848530 - Charlie1a DNA MER1_type -1049 406 31 * 547 197 197 26 chr4 69440179 69440331 -114848331 - MER5A DNA MER1_type -3 186 9 796 234 19 24 chr4 69440346 69440555 -114848107 - MER3 DNA MER1_type 0 209 2 356 231 52 45 chr4 69442100 69442234 -114846428 + MER102b DNA MER1_type 192 326 -15 2906 164 21 30 chr4 69442430 69442992 -114845670 + MER41D LTR ERV1 1 557 0 2381 113 8 24 chr4 69442996 69443366 -114845296 + THE1B LTR MaLR 1 364 0 417 319 0 21 chr4 69445185 69445329 -114843333 - MIR3 SINE MIR -14 194 54 2568 136 36 2 chr4 69445398 69445809 -114842853 - MSTA LTR MaLR -1 427 3 26 30 0 0 chr4 69447140 69447173 -114841489 + AT_rich Low_complexity Low_complexity 1 33 0 1737 179 57 80 chr4 69447807 69448231 -114840431 + MLT2D LTR ERVL 1 414 0 236 286 0 16 chr4 69448554 69448617 -114840045 + CT-rich Low_complexity Low_complexity 3 64 0 21 0 0 0 chr4 69448857 69448878 -114839784 + AT_rich Low_complexity Low_complexity 1 21 0 4662 111 10 3 chr4 69448883 69449604 -114839058 - L1PA14 LINE L1 -131 6030 5305 1486 127 0 0 chr4 69449603 69449847 -114838815 + L1P LINE L1 3531 3774 -2372 * 3729 200 70 98 chr4 69449847 69450992 -114837670 - MER52A LTR ERV1 -536 1219 29 3279 183 22 0 chr4 69450995 69451671 -114836991 + L1P LINE L1 4594 5284 -862 339 129 0 16 chr4 69451696 69451758 -114836904 + MER116 DNA Mariner 5 65 -15 253 322 49 21 chr4 69453013 69453156 -114835506 + L3 LINE CR1 1166 1312 -265 461 277 35 56 chr4 69453208 69453439 -114835223 + MER102a DNA MER1_type 92 317 -13 213 281 227 27 chr4 69453439 69453624 -114835038 + L3 LINE CR1 1352 1573 -4 2193 109 3 0 chr4 69453679 69453994 -114834668 - AluSq SINE Alu 0 316 1 46 19 0 0 chr4 69453994 69454047 -114834615 + AT_rich Low_complexity Low_complexity 1 53 0 864 315 145 22 chr4 69454137 69454956 -114833706 - L2 LINE L2 0 3313 2377 199 339 18 80 chr4 69455066 69455178 -114833484 - L2 LINE L2 -93 3179 3075 191 328 0 0 chr4 69455331 69455392 -114833270 - L3b LINE CR1 -387 1196 1136 2109 94 4 0 chr4 69455999 69456264 -114832398 - AluSq SINE Alu -15 298 33 735 238 47 19 chr4 69457950 69458164 -114830498 - MIR SINE MIR -42 220 1 393 262 103 0 chr4 69458450 69458557 -114830105 + MIR SINE MIR 49 166 -96 3720 122 136 107 chr4 69458561 69459893 -114828769 - pTR5 LTR ERV1 0 2438 743 223 235 132 0 chr4 69459895 69459963 -114828699 + MIR SINE MIR 161 237 -25 479 242 33 8 chr4 69460009 69460129 -114828533 - MIR SINE MIR -24 238 116 196 272 12 86 chr4 69460211 69460292 -114828370 - MIR SINE MIR -168 94 20 25 31 0 0 chr4 69461075 69461107 -114827555 + AT_rich Low_complexity Low_complexity 1 32 0 401 304 67 59 chr4 69461267 69461520 -114827142 - L2 LINE L2 0 3313 3059 2365 98 7 3 chr4 69461708 69462015 -114826647 + AluSq SINE Alu 1 308 -5 386 257 29 101 chr4 69464605 69464881 -114823781 - MIR SINE MIR -3 259 4 1528 151 64 84 chr4 69465064 69465421 -114823241 - MSTD LTR MaLR -2 394 45 199 342 93 31 chr4 69465605 69465766 -114822896 + MIR SINE MIR 92 262 0 183 80 0 0 chr4 69465939 69465964 -114822698 + (CA)n Simple_repeat Simple_repeat 1 25 0 20691 190 26 20 chr4 69467800 69468889 -114819773 - L1PA13 LINE L1 0 7601 6520 2371 64 41 0 chr4 69468889 69469184 -114819478 - AluY SINE Alu -4 307 1 20691 190 26 20 chr4 69469184 69474858 -114813804 - L1PA13 LINE L1 -1081 6520 1 479 215 67 51 chr4 69475896 69476091 -114812571 - MER74B LTR ERVL -3 619 422 483 226 33 37 chr4 69476123 69476335 -114812327 - LTR1 LTR ERV1 -580 205 1 305 331 31 8 chr4 69477514 69477641 -114811021 - MIR SINE MIR -124 138 9 5081 93 3 18 chr4 69477777 69478115 -114810547 - L1P LINE L1 -1401 4745 4403 2298 104 0 0 chr4 69478115 69478422 -114810240 - AluY SINE Alu -4 307 1 5081 93 3 18 chr4 69478422 69478859 -114809803 - L1P LINE L1 -1743 4403 3982 6879 75 4 0 chr4 69478862 69480288 -114808374 + L1PA8 LINE L1 4739 6168 -4 218 366 45 0 chr4 69480877 69480989 -114807673 + MIR3 SINE MIR 4 120 -88 1666 163 49 10 chr4 69481247 69481535 -114807127 - AluJo SINE Alu -13 299 1 2315 74 0 3 chr4 69481920 69482205 -114806457 + AluSq SINE Alu 1 319 0 262 57 0 0 chr4 69482205 69482240 -114806422 + (CAAA)n Simple_repeat Simple_repeat 2 164 0 210 130 0 43 chr4 69483675 69483721 -114804941 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 366 343 21 28 chr4 69484121 69484264 -114804398 + MIR3 SINE MIR 19 160 -48 23 68 0 0 chr4 69484399 69484443 -114804219 + AT_rich Low_complexity Low_complexity 1 44 0 346 203 49 32 chr4 69484593 69484716 -114803946 - L1ME4a LINE L1 -189 5932 5808 29 28 0 0 chr4 69484774 69484810 -114803852 + AT_rich Low_complexity Low_complexity 1 36 0 293 300 36 0 chr4 69484817 69484927 -114803735 - L1ME4a LINE L1 -362 5759 5646 1976 207 84 39 chr4 69484933 69485446 -114803216 - MLT1F LTR MaLR -6 536 1 1522 226 24 46 chr4 69486245 69486868 -114801794 - L1PBa LINE L1 -4284 2578 1918 2257 270 56 33 chr4 69486898 69487557 -114801105 - L1PBa LINE L1 -6113 739 66 27580 118 45 8 chr4 69487563 69487735 -114800927 - L1P LINE L1 -1653 4493 4329 2140 75 7 65 chr4 69487735 69488085 -114800577 + AluY SINE Alu 1 311 0 27580 118 45 8 chr4 69488085 69488882 -114799780 - L1P LINE L1 -1817 4329 3563 17382 50 6 0 chr4 69488882 69491883 -114796779 - L1PA5 LINE L1 -13 6141 3162 27580 118 45 8 chr4 69491883 69495234 -114793428 - L1P LINE L1 -2583 3563 11 5198 205 80 31 chr4 69495241 69496443 -114792219 - L1M4 LINE L1 -2577 4988 3847 1987 93 12 99 chr4 69496443 69496775 -114791887 - AluSq SINE Alu -10 303 1 5198 205 80 31 chr4 69496775 69499867 -114788795 - L1M4 LINE L1 -3718 3847 17 930 258 28 4 chr4 69499861 69500109 -114788553 - L1MC4 LINE L1 -409 7633 7380 * 397 307 35 0 chr4 69500960 69501074 -114787588 - L2 LINE L2 0 3272 3155 234 276 240 10 chr4 69501085 69501277 -114787385 - L3 LINE CR1 -192 1385 1150 474 322 67 91 chr4 69501480 69501587 -114787075 - L3 LINE CR1 -821 756 648 2048 113 3 3 chr4 69501587 69501869 -114786793 + AluSx SINE Alu 1 282 -30 474 322 67 91 chr4 69501869 69502236 -114786426 - L3 LINE CR1 -929 648 293 25 31 0 0 chr4 69502655 69502687 -114785975 + AT_rich Low_complexity Low_complexity 1 32 0 189 0 0 0 chr4 69502824 69502845 -114785817 + (TA)n Simple_repeat Simple_repeat 2 22 0 1494 201 14 79 chr4 69503555 69503972 -114784690 + MLT1B LTR MaLR 1 390 0 791 252 13 50 chr4 69504033 69504271 -114784391 - MIR SINE MIR -30 232 4 1169 217 87 83 chr4 69504379 69504839 -114783823 - MLT1C LTR MaLR 0 467 6 665 299 87 49 chr4 69505512 69506063 -114782599 + L1ME4a LINE L1 5326 5897 -224 23 0 0 0 chr4 69506090 69506113 -114782549 + AT_rich Low_complexity Low_complexity 1 23 0 2089 93 30 20 chr4 69506131 69506432 -114782230 - AluSq SINE Alu -9 304 1 22 35 0 0 chr4 69506475 69506504 -114782158 + AT_rich Low_complexity Low_complexity 1 29 0 30 69 0 0 chr4 69506526 69506584 -114782078 + AT_rich Low_complexity Low_complexity 1 58 0 2716 147 22 7 chr4 69507301 69507764 -114780898 - L1MA7 LINE L1 -25 6266 5797 243 0 0 0 chr4 69507764 69507791 -114780871 + (TA)n Simple_repeat Simple_repeat 2 28 0 25 0 0 0 chr4 69508087 69508112 -114780550 + AT_rich Low_complexity Low_complexity 1 25 0 311 285 160 40 chr4 69508112 69508233 -114780429 - HAL1 LINE L1 -7 2500 2395 2491 62 0 0 chr4 69508233 69508538 -114780124 - AluY SINE Alu -6 305 1 311 285 160 40 chr4 69508538 69508841 -114779821 - HAL1 LINE L1 -112 2395 2025 180 0 0 0 chr4 69508905 69508925 -114779737 + (A)n Simple_repeat Simple_repeat 1 20 0 286 250 86 35 chr4 69508983 69509099 -114779563 - HAL1 LINE L1 -799 1708 1587 565 317 90 6 chr4 69509326 69509670 -114778992 - HAL1 LINE L1 -937 1570 1198 374 285 98 90 chr4 69510210 69510466 -114778196 - HAL1 LINE L1 -2149 358 101 229 262 107 10 chr4 69510482 69510585 -114778077 - L2 LINE L2 -10 3303 3191 1958 168 20 18 chr4 69511037 69511437 -114777225 + L1MA8 LINE L1 5889 6289 -2 22 0 0 0 chr4 69511456 69511478 -114777184 + AT_rich Low_complexity Low_complexity 1 22 0 250 241 0 0 chr4 69511675 69511733 -114776929 + (TTCA)n Simple_repeat Simple_repeat 3 60 0 745 314 74 63 chr4 69513517 69513991 -114774671 - L2 LINE L2 0 3313 2835 277 326 20 48 chr4 69514011 69514158 -114774504 + MLT1H LTR MaLR 84 226 -323 400 332 80 35 chr4 69514371 69514597 -114774065 - L2 LINE L2 -489 2825 2590 1990 140 3 3 chr4 69517696 69518003 -114770659 - AluSx SINE Alu -5 307 1 202 331 33 58 chr4 69518173 69518294 -114770368 + MIR SINE MIR 22 139 -69 256 302 0 0 chr4 69519059 69519122 -114769540 + CT-rich Low_complexity Low_complexity 1 63 0 950 211 94 42 chr4 69519451 69519759 -114768903 - MER63C DNA MER1_type -563 367 44 22 0 0 0 chr4 69519774 69519796 -114768866 + AT_rich Low_complexity Low_complexity 1 22 0 3446 147 18 70 chr4 69519926 69520655 -114768007 - LTR8 LTR ERV1 0 691 1 1293 201 88 30 chr4 69521188 69521639 -114767023 - MER69 DNA AcHobo 0 2526 1961 225 0 0 0 chr4 69521639 69521664 -114766998 + (TG)n Simple_repeat Simple_repeat 1 25 0 1293 201 88 30 chr4 69521664 69521788 -114766874 - MER69 DNA AcHobo -565 1961 1846 1258 238 68 6 chr4 69522112 69522448 -114766214 - MER69 DNA AcHobo -869 357 1 220 294 24 24 chr4 69523031 69523116 -114765546 - MER5B DNA MER1_type 0 178 94 1578 179 77 15 chr4 69523428 69523768 -114764894 - MLT1A1 LTR MaLR -2 363 3 1094 255 47 67 chr4 69524199 69524807 -114763855 - L1MC5 LINE L1 -809 7152 6554 1249 210 78 31 chr4 69524807 69525064 -114763598 - MLT1A2 LTR MaLR 0 374 94 198 0 0 0 chr4 69525064 69525086 -114763576 + (CTAAT)n Simple_repeat Simple_repeat 5 26 0 1249 210 78 31 chr4 69525086 69525185 -114763477 - MLT1A2 LTR MaLR -280 94 1 1094 255 47 67 chr4 69525185 69525262 -114763400 - L1MC5 LINE L1 -1407 6554 6477 349 354 42 5 chr4 69525418 69525633 -114763029 - HAL1b LINE L1 -704 644 422 1326 175 47 27 chr4 69525644 69525901 -114762761 + AluJo SINE Alu 25 286 -26 27 0 0 0 chr4 69525906 69525933 -114762729 + AT_rich Low_complexity Low_complexity 1 27 0 426 39 0 0 chr4 69526190 69526242 -114762420 + (TG)n Simple_repeat Simple_repeat 2 53 0 50 65 0 0 chr4 69526669 69526761 -114761901 + AT_rich Low_complexity Low_complexity 1 92 0 715 149 26 0 chr4 69526801 69526915 -114761747 - MSTD LTR MaLR 0 396 280 251 238 32 0 chr4 69528048 69528111 -114760551 - L2 LINE L2 0 3313 3249 533 234 188 64 chr4 69529716 69529998 -114758664 - MLT1H LTR MaLR -33 516 200 7349 45 3 0 chr4 69530009 69530924 -114757738 - L1PA4 LINE L1 -2031 4115 3198 10629 26 1 9 chr4 69530924 69532953 -114755709 + L1PA4 LINE L1 4132 6153 -2 222 62 0 0 chr4 69535267 69535299 -114753363 + (CA)n Simple_repeat Simple_repeat 2 33 0 225 45 45 23 chr4 69535663 69535707 -114752955 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 272 160 40 0 chr4 69536230 69536280 -114752382 - Zaphod DNA AcHobo -1 4030 3979 * 764 279 133 48 chr4 69536278 69536676 -114751986 - MER115 DNA AcHobo -241 452 21 456 210 72 24 chr4 69537171 69537338 -114751324 - MER63 DNA MER1_type -39 1022 848 7193 49 1 1 chr4 69537338 69538216 -114750446 - L1PA5 LINE L1 -23 6131 5254 3538 54 0 0 chr4 69538229 69538674 -114749988 + L1P LINE L1 2327 2771 -3375 1612 76 368 0 chr4 69538669 69538973 -114749689 + L1P LINE L1 1754 2169 -3977 * 1446 98 3 7 chr4 69538969 69539191 -114749471 - L1MEc LINE L1 -3812 2373 2138 * 247 279 93 25 chr4 69539196 69539357 -114749305 - L2 LINE L2 -1015 2299 2128 1140 339 43 0 chr4 69539404 69539847 -114748815 - HERVL LTR ERVL -2340 3314 2853 34414 99 26 13 chr4 69539986 69540648 -114748014 - L1PA6 LINE L1 0 6154 5502 2282 93 0 3 chr4 69540648 69540939 -114747723 - AluY SINE Alu -20 291 2 34414 99 26 13 chr4 69540939 69544102 -114744560 - L1PA6 LINE L1 -652 5502 2218 221 57 29 0 chr4 69544102 69544137 -114744525 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 34414 99 26 13 chr4 69544137 69546375 -114742287 - L1PA6 LINE L1 -3936 2218 11 740 343 50 21 chr4 69546411 69546895 -114741767 - HERVL LTR ERVL -3077 2687 2190 2606 246 20 20 chr4 69547114 69547959 -114740703 + L1PBa LINE L1 1 985 -5219 1357 51 0 6 chr4 69547955 69548130 -114740532 - L1P LINE L1 -4362 1784 1611 * 1902 194 100 23 chr4 69548132 69551780 -114736882 + L1PB3 LINE L1 91 4421 -1790 279 57 0 0 chr4 69551780 69551815 -114736847 + MLT2A1 LTR ERVL 410 444 0 1902 194 100 23 chr4 69551815 69553754 -114734908 + L1PB3 LINE L1 4421 6210 -1 2495 63 0 0 chr4 69553784 69554083 -114734579 - AluY SINE Alu -12 299 1 849 307 97 47 chr4 69554086 69554685 -114733977 - HERVL LTR ERVL -4003 993 365 651 328 52 27 chr4 69555285 69555706 -114732956 + LTR16A LTR ERVL 12 456 -1 454 267 118 12 chr4 69557218 69557379 -114731283 + MIR SINE MIR 51 228 -34 1910 141 72 14 chr4 69558394 69558757 -114729905 - MER61B LTR ERV1 -29 396 13 33 25 0 0 chr4 69558950 69558990 -114729672 + AT_rich Low_complexity Low_complexity 1 40 0 30 0 0 0 chr4 69561109 69561139 -114727523 + AT_rich Low_complexity Low_complexity 1 30 0 420 299 167 23 chr4 69561168 69561389 -114727273 + MIR SINE MIR 9 261 -1 191 395 0 37 chr4 69562066 69562175 -114726487 + L2 LINE L2 3154 3258 -14 244 235 0 8 chr4 69562178 69562298 -114726364 + GA-rich Low_complexity Low_complexity 1 118 0 288 160 43 0 chr4 69563403 69563497 -114725165 + (TTATA)n Simple_repeat Simple_repeat 2 99 0 249 174 29 87 chr4 69563542 69563611 -114725051 + L2 LINE L2 3203 3267 -5 2189 178 18 50 chr4 69564683 69565178 -114723484 + MER31A LTR ERV1 7 485 0 2267 78 0 4 chr4 69565334 69565644 -114723018 - AluSq SINE Alu 0 315 7 21 0 0 0 chr4 69566032 69566053 -114722609 + AT_rich Low_complexity Low_complexity 1 21 0 222 303 168 17 chr4 69568132 69568251 -114720411 - MIR SINE MIR -44 218 82 27 0 0 0 chr4 69568348 69568375 -114720287 + AT_rich Low_complexity Low_complexity 1 27 0 11552 76 8 0 chr4 69568427 69570767 -114717895 - L1PA6 LINE L1 0 6154 3801 372 313 14 0 chr4 69571036 69571183 -114717479 - L1ME LINE L1 -384 5737 5589 29 60 0 0 chr4 69571255 69571305 -114717357 + AT_rich Low_complexity Low_complexity 1 50 0 387 0 0 0 chr4 69572383 69572426 -114716236 + (CA)n Simple_repeat Simple_repeat 2 44 0 3751 120 42 68 chr4 69572769 69573058 -114715604 - L1MA8 LINE L1 -67 6224 5929 1643 67 13 50 chr4 69573058 69573296 -114715366 - AluY SINE Alu -18 293 65 3751 120 42 68 chr4 69573296 69573576 -114715086 - L1MA8 LINE L1 -362 5929 5643 195 42 0 0 chr4 69573576 69573600 -114715062 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 5524 67 0 1 chr4 69573601 69574307 -114714355 - L1PA7 LINE L1 -7 6147 5443 3751 120 42 68 chr4 69574307 69574494 -114714168 - L1MA8 LINE L1 -647 5644 5485 464 299 15 8 chr4 69574692 69574826 -114713836 + L2 LINE L2 3138 3272 0 180 0 0 0 chr4 69574917 69574937 -114713725 + (A)n Simple_repeat Simple_repeat 1 20 0 182 329 106 53 chr4 69576644 69576851 -114711811 + L2 LINE L2 2452 2669 -645 1120 140 1 11 chr4 69577568 69577797 -114710865 + L1M1 LINE L1 2892 3464 -4102 225 289 0 36 chr4 69577899 69577982 -114710680 - Charlie6 DNA MER1_type -1120 2380 2301 22 0 0 0 chr4 69578321 69578343 -114710319 + AT_rich Low_complexity Low_complexity 1 22 0 706 224 0 14 chr4 69578366 69578509 -114710153 - MER20 DNA MER1_type -78 141 1 527 339 10 26 chr4 69578522 69578714 -114709948 - MER5A DNA MER1_type 0 189 1 183 381 62 21 chr4 69578714 69578799 -114709863 - L2 LINE L2 -52 3220 3132 185 306 42 49 chr4 69578910 69579054 -114709608 - L2 LINE L2 -212 3060 2918 230 244 0 0 chr4 69579117 69579162 -114709500 + L2 LINE L2 3213 3257 -15 2249 92 0 0 chr4 69579432 69579757 -114708905 - AluSx SINE Alu 0 325 1 345 344 16 16 chr4 69580295 69580417 -114708245 + MER5A DNA MER1_type 66 187 -2 771 251 0 12 chr4 69580432 69580595 -114708067 + MER20 DNA MER1_type 1 161 -58 212 253 13 27 chr4 69581499 69581574 -114707088 + (TA)n Simple_repeat Simple_repeat 1 74 0 569 208 33 0 chr4 69581689 69581809 -114706853 + L1MC1 LINE L1 6210 6333 0 35 0 0 0 chr4 69581929 69581964 -114706698 + AT_rich Low_complexity Low_complexity 1 35 0 888 136 73 17 chr4 69583119 69583296 -114705366 - MER53 DNA DNA 0 189 3 773 135 0 0 chr4 69583542 69583653 -114705009 - THE1-int LTR MaLR -350 1230 1120 2499 146 15 17 chr4 69584008 69584412 -114704250 + MLT2B1 LTR ERVL 1 403 -117 2938 131 18 18 chr4 69584637 69585133 -114703529 - Tigger4(Zombi) DNA MER2_type -3 2728 2233 229 69 0 0 chr4 69585126 69585155 -114703507 - Tigger4(Zombi) DNA MER2_type -2574 157 129 * 225 196 0 0 chr4 69585155 69585201 -114703461 + (TA)n Simple_repeat Simple_repeat 2 47 0 7325 44 4 0 chr4 69585201 69586401 -114702261 - L1PA5 LINE L1 -11 6143 4942 * 8651 42 0 1 chr4 69586396 69588228 -114700434 - L1PA5 LINE L1 0 6154 4321 34252 54 1 1 chr4 69588233 69592511 -114696151 + L1P LINE L1 7 4284 -1862 8352 104 5 2 chr4 69592501 69593665 -114694997 - L1P LINE L1 -4977 1169 2 * 24 67 0 0 chr4 69593761 69593806 -114694856 + AT_rich Low_complexity Low_complexity 1 45 0 338 117 0 0 chr4 69595483 69595543 -114693119 + L1PA16 LINE L1 6106 6165 -1 1404 233 137 53 chr4 69595934 69596163 -114692499 + MLT1E1 LTR MaLR 1 209 -445 188 65 0 32 chr4 69596163 69596194 -114692468 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1404 233 137 53 chr4 69596194 69596560 -114692102 + MLT1E1 LTR MaLR 209 654 0 237 282 97 58 chr4 69597675 69597778 -114690884 + MER91C DNA MER1_type 32 138 -2 378 249 126 4 chr4 69598849 69599077 -114689585 - L1ME3 LINE L1 -243 5902 5636 278 259 138 73 chr4 69599271 69599503 -114689159 - L1ME3 LINE L1 -508 5639 5393 1879 209 50 27 chr4 69599527 69599874 -114688788 - MLT1C LTR MaLR 0 467 106 2095 65 11 0 chr4 69599874 69600150 -114688512 - L1PA7 LINE L1 -2 6152 5874 1879 209 50 27 chr4 69600150 69600242 -114688420 - MLT1C LTR MaLR -361 106 18 236 270 135 21 chr4 69600481 69600718 -114687944 - L1ME3 LINE L1 -1127 5002 4739 1278 214 10 0 chr4 69600823 69601118 -114687544 - L1P LINE L1 -1614 4532 4235 503 210 0 0 chr4 69601131 69601255 -114687407 - L1P LINE L1 -2976 3170 3047 5749 113 12 2 chr4 69601256 69602104 -114686558 + L1PA15 LINE L1 5307 6162 -3 457 294 82 35 chr4 69602139 69602828 -114685834 - L1ME3 LINE L1 -1548 4581 3860 23 33 0 0 chr4 69602904 69602934 -114685728 + AT_rich Low_complexity Low_complexity 1 30 0 389 321 76 22 chr4 69602935 69603036 -114685626 + L1M4 LINE L1 2355 2449 -3697 2263 143 58 17 chr4 69603036 69603450 -114685212 + Tigger2a DNA MER2_type 4 434 0 389 321 76 22 chr4 69603450 69603572 -114685090 + L1M4 LINE L1 2449 2590 -3556 2045 149 3 0 chr4 69603790 69604092 -114684570 - AluSq SINE Alu -10 303 1 186 43 0 0 chr4 69604180 69604203 -114684459 + (A)n Simple_repeat Simple_repeat 1 23 0 15018 159 32 7 chr4 69604363 69607749 -114680913 - L1MA3 LINE L1 -1 7723 4200 1950 148 7 0 chr4 69607749 69608047 -114680615 - AluSx SINE Alu -12 300 1 15018 159 32 7 chr4 69608047 69608940 -114679722 - L1MA3 LINE L1 -3524 4200 3331 1738 173 6 88 chr4 69608964 69609431 -114679231 - L1MB8 LINE L1 -9 6169 5741 6248 107 14 4 chr4 69609431 69610400 -114678262 - L1MA3 LINE L1 -4217 3348 2370 448 328 34 59 chr4 69610401 69610788 -114677874 - L1ME3 LINE L1 -2520 3609 3233 379 228 112 74 chr4 69610790 69611005 -114677657 - L1 LINE L1 -2969 3160 2938 1014 257 20 8 chr4 69611044 69611289 -114677373 - MLT1E3 LTR MaLR 0 624 377 236 205 18 0 chr4 69611351 69611407 -114677255 - MLT1E LTR MaLR -188 436 373 846 234 35 111 chr4 69611438 69611754 -114676908 - MLT1E LTR MaLR -248 345 54 280 283 131 94 chr4 69611972 69612216 -114676446 - L1ME3 LINE L1 -5517 602 350 255 135 24 48 chr4 69613122 69613248 -114675414 + (TA)n Simple_repeat Simple_repeat 2 124 0 225 304 29 49 chr4 69613270 69613372 -114675290 - MER5A DNA MER1_type -55 134 35 22 70 0 0 chr4 69613624 69613667 -114674995 + AT_rich Low_complexity Low_complexity 1 43 0 24 67 0 0 chr4 69613915 69613960 -114674702 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr4 69615345 69615366 -114673296 + AT_rich Low_complexity Low_complexity 1 21 0 6735 142 63 31 chr4 69615409 69616669 -114671993 - HSMAR2 DNA Mariner -1 1301 2 319 264 144 8 chr4 69617256 69617381 -114671281 - MIR SINE MIR 0 262 121 2456 119 11 6 chr4 69617504 69617866 -114670796 - THE1B LTR MaLR 0 364 1 10456 104 33 28 chr4 69617872 69619437 -114669225 - THE1B-int LTR MaLR -7 1573 1 2245 126 5 35 chr4 69619438 69619811 -114668851 - THE1B LTR MaLR -2 362 1 222 128 0 0 chr4 69619986 69620025 -114668637 + (TC)n Simple_repeat Simple_repeat 2 40 0 199 355 41 0 chr4 69620125 69620246 -114668416 + MIR SINE MIR 107 232 -30 1090 205 70 20 chr4 69620635 69620879 -114667783 + AluJb SINE Alu 57 312 0 226 378 54 18 chr4 69621440 69621551 -114667111 - L2 LINE L2 -15 3298 3184 1931 136 147 8 chr4 69622273 69622647 -114666015 + MSTB1 LTR MaLR 1 426 -6 643 12 0 35 chr4 69622689 69622775 -114665887 - L1PA4 LINE L1 0 6155 6073 22 0 0 0 chr4 69623176 69623198 -114665464 + AT_rich Low_complexity Low_complexity 1 22 0 431 301 29 57 chr4 69623230 69623439 -114665223 - L3b LINE CR1 -191 1392 1190 1424 124 14 0 chr4 69623605 69623815 -114664847 + MLT2B1 LTR ERVL 1 213 -307 212 200 15 0 chr4 69623815 69623880 -114664782 + (TA)n Simple_repeat Simple_repeat 2 67 0 667 195 89 0 chr4 69623997 69624166 -114664496 - MER53 DNA DNA 0 189 6 415 295 46 29 chr4 69624457 69624630 -114664032 + MIR SINE MIR 80 255 -7 218 359 94 19 chr4 69624780 69624992 -114663670 - L2 LINE L2 -229 3084 2857 302 191 133 0 chr4 69625000 69625105 -114663557 - MER5C DNA MER1_type -77 247 129 188 262 0 0 chr4 69625293 69625335 -114663327 - MER5C DNA MER1_type -278 46 5 284 343 40 60 chr4 69625628 69625829 -114662833 + MIR3 SINE MIR 12 208 0 43536 43 2 2 chr4 69625855 69632005 -114656657 - L1PA3 LINE L1 -3 6152 3 218 188 0 79 chr4 69632053 69632154 -114656508 + A-rich Low_complexity Low_complexity 1 93 0 456 320 64 6 chr4 69633007 69633179 -114655483 - MIR SINE MIR -53 209 28 184 135 0 27 chr4 69635199 69635236 -114653426 - L2 LINE L2 -3 3310 3275 333 356 50 11 chr4 69635528 69635708 -114652954 + MLT1K LTR MaLR 7 193 -395 260 215 0 15 chr4 69635786 69635851 -114652811 + MLT1K LTR MaLR 359 422 -166 323 309 54 13 chr4 69635913 69636062 -114652600 + MLT1K LTR MaLR 432 586 -2 970 189 85 39 chr4 69636281 69636587 -114652075 - MER33 DNA MER1_type -2 322 3 190 295 33 0 chr4 69637350 69637411 -114651251 + MIR SINE MIR 78 140 -122 212 277 84 42 chr4 69637761 69637880 -114650782 - MIR SINE MIR -7 255 132 471 276 110 14 chr4 69637895 69638040 -114650622 + MIR SINE MIR 17 175 -87 1125 195 33 0 chr4 69638044 69638254 -114650408 + MER20 DNA MER1_type 1 217 -2 335 285 0 0 chr4 69638292 69638392 -114650270 - MIR SINE MIR -80 128 29 4172 146 101 93 chr4 69638449 69638844 -114649818 + L1MC3 LINE L1 6706 7097 -688 294 284 0 0 chr4 69638844 69638911 -114649751 + MLT1F1 LTR MaLR 35 101 -466 4172 146 101 93 chr4 69638911 69639106 -114649556 + L1MC3 LINE L1 7097 7289 -496 378 0 0 0 chr4 69639106 69639148 -114649514 + (TG)n Simple_repeat Simple_repeat 1 42 0 2272 82 0 0 chr4 69639148 69639428 -114649234 - AluSq SINE Alu -33 280 1 4172 146 101 93 chr4 69639428 69639841 -114648821 + L1MC3 LINE L1 7288 7785 0 328 352 32 8 chr4 69640615 69640740 -114647922 + MLT1L LTR MaLR 354 481 -134 22 0 0 0 chr4 69641825 69641847 -114646815 + AT_rich Low_complexity Low_complexity 1 22 0 223 292 0 34 chr4 69644169 69644258 -114644404 + T-rich Low_complexity Low_complexity 5 90 0 23 33 0 0 chr4 69644323 69644353 -114644309 + AT_rich Low_complexity Low_complexity 1 30 0 2062 134 3 3 chr4 69644410 69644708 -114643954 - AluSx SINE Alu -14 298 1 216 279 29 19 chr4 69644815 69644919 -114643743 + (TA)n Simple_repeat Simple_repeat 2 106 0 * 220 226 19 0 chr4 69644872 69644925 -114643737 + (TATATG)n Simple_repeat Simple_repeat 5 58 0 364 135 0 0 chr4 69647544 69647596 -114641066 - AluJo SINE Alu -12 290 239 718 211 45 0 chr4 69647597 69647635 -114641027 - AluJo SINE Alu -149 163 128 363 23 0 0 chr4 69647635 69647679 -114640983 + (TG)n Simple_repeat Simple_repeat 2 45 0 718 211 45 0 chr4 69647679 69647796 -114640866 - AluJo SINE Alu -184 128 1 2086 111 11 0 chr4 69647884 69648189 -114640473 - AluSx SINE Alu 0 308 1 21 0 0 0 chr4 69648382 69648403 -114640259 + AT_rich Low_complexity Low_complexity 1 21 0 488 135 157 0 chr4 69648695 69648784 -114639878 + MER5A DNA MER1_type 10 112 -77 257 309 35 59 chr4 69648848 69648995 -114639667 + MER5B DNA MER1_type 30 183 -6 2488 57 0 0 chr4 69650124 69650420 -114638242 - AluY SINE Alu -15 296 1 205 347 57 65 chr4 69650440 69650702 -114637960 - L3b LINE CR1 -83 1500 1241 194 286 0 20 chr4 69650967 69651016 -114637646 - L2 LINE L2 -9 3263 3216 192 108 27 27 chr4 69651714 69651751 -114636911 + L3b LINE CR1 1530 1566 -17 1386 103 11 0 chr4 69651792 69651976 -114636686 - AluSg/x SINE Alu -17 293 108 264 214 0 0 chr4 69652112 69652168 -114636494 - L2 LINE L2 -1 3312 3257 191 434 35 0 chr4 69652636 69652749 -114635913 - L2 LINE L2 -22 3250 3134 249 297 68 8 chr4 69653687 69653805 -114634857 - MIR SINE MIR -21 241 117 1102 97 0 0 chr4 69653986 69654131 -114634531 - AluSg/x SINE Alu -9 301 157 424 260 197 0 chr4 69654371 69654579 -114634083 - MER112 DNA MER1_type -11 249 1 248 211 167 22 chr4 69654736 69654826 -114633836 - MIR SINE MIR -66 142 40 231 131 0 66 chr4 69656243 69656304 -114632358 + (TCC)n Simple_repeat Simple_repeat 2 58 0 360 271 86 7 chr4 69658685 69658825 -114629837 - MIR SINE MIR -31 231 81 468 288 27 0 chr4 69659079 69659225 -114629437 - MIR SINE MIR -15 247 98 751 284 39 39 chr4 69660427 69660709 -114627953 - L1ME3A LINE L1 -6 6164 5883 377 269 76 25 chr4 69661631 69661750 -114626912 + L2 LINE L2 3189 3313 0 1064 116 0 0 chr4 69664030 69664176 -114624486 - AluJb SINE Alu -8 304 159 2061 123 13 0 chr4 69664185 69664485 -114624177 - AluSg1 SINE Alu -5 304 1 309 293 154 0 chr4 69664563 69664686 -114623976 + MIR SINE MIR 13 154 -108 3613 75 2 0 chr4 69664701 69665169 -114623493 - L1PA10 LINE L1 -5 6163 5695 3477 136 19 31 chr4 69665169 69665789 -114622873 - L1PA10 LINE L1 -968 5178 4566 390 289 72 90 chr4 69666119 69666575 -114622087 - MLT1K LTR MaLR 0 588 141 1467 206 67 49 chr4 69666733 69667122 -114621540 + MLT1D LTR MaLR 1 396 -109 191 62 62 0 chr4 69669216 69669248 -114619414 + CT-rich Low_complexity Low_complexity 4 37 0 302 26 0 0 chr4 69669293 69669332 -114619330 - MADE1 DNA Mariner 0 80 42 * 1925 146 138 14 chr4 69669319 69669690 -114618972 - MSTA LTR MaLR -11 417 1 202 283 40 40 chr4 69670152 69670251 -114618411 + MIR3 SINE MIR 92 190 -18 638 244 125 0 chr4 69670342 69670518 -114618144 - MIR SINE MIR -2 260 63 207 255 0 0 chr4 69670965 69671012 -114617650 - MIR SINE MIR -5 257 211 265 308 67 25 chr4 69671242 69671362 -114617300 + L3b LINE CR1 1305 1429 -154 1056 280 118 22 chr4 69672324 69672851 -114615811 - L2 LINE L2 0 3313 2623 401 233 33 8 chr4 69673035 69673155 -114615507 - MIR SINE MIR -56 206 84 232 270 189 38 chr4 69673553 69673712 -114614950 + MIR SINE MIR 19 201 -61 1185 80 0 0 chr4 69675254 69675416 -114613246 + (TTC)n Simple_repeat Simple_repeat 2 163 0 307 273 179 34 chr4 69675803 69675996 -114612666 + MIR SINE MIR 6 221 -41 687 197 93 81 chr4 69677508 69677767 -114610895 + MER5C DNA MER1_type 60 321 -3 1639 220 6 12 chr4 69678102 69678434 -114610228 + MER90 LTR ERV1 283 612 -2 26 0 0 0 chr4 69680294 69680320 -114608342 + AT_rich Low_complexity Low_complexity 1 26 0 30 0 0 0 chr4 69680440 69680470 -114608192 + AT_rich Low_complexity Low_complexity 1 30 0 3178 191 9 8 chr4 69681467 69682107 -114606555 - L1MB3 LINE L1 -2 6181 5541 333 135 0 0 chr4 69682107 69682159 -114606503 - THE1C LTR MaLR -21 354 303 * 857 129 27 0 chr4 69682158 69682305 -114606357 - HSMAR2 DNA Mariner -1150 152 2 2368 92 0 0 chr4 69682903 69683206 -114605456 + AluY SINE Alu 1 303 -8 295 304 96 9 chr4 69683213 69683328 -114605334 - MIR SINE MIR 0 262 138 2428 132 3 6 chr4 69683465 69683830 -114604832 - THE1B LTR MaLR 0 364 1 11748 93 6 1 chr4 69683830 69685402 -114603260 - THE1B-int LTR MaLR 0 1580 1 2321 126 8 16 chr4 69685402 69685767 -114602895 - THE1B LTR MaLR 0 364 3 2996 187 28 34 chr4 69685768 69686748 -114601914 - L1M3 LINE L1 -616 5803 4837 * 8580 173 40 11 chr4 69686737 69687734 -114600928 - L1M3 LINE L1 -4652 1732 666 180 0 0 0 chr4 69687734 69687754 -114600908 + (TTG)n Simple_repeat Simple_repeat 2 21 0 8580 173 40 11 chr4 69687754 69688417 -114600245 - L1M3 LINE L1 -5718 666 24 470 281 52 33 chr4 69688653 69688806 -114599856 + MIR SINE MIR 32 187 -75 2401 73 0 0 chr4 69691022 69691322 -114597340 - AluY SINE Alu -11 300 1 329 255 0 43 chr4 69691689 69691783 -114596879 + L1MC4 LINE L1 6614 6703 -1339 5480 139 54 19 chr4 69691809 69692834 -114595828 + Tigger3b DNA MER2_type 171 1231 0 225 0 0 0 chr4 69692879 69692904 -114595758 + (TG)n Simple_repeat Simple_repeat 1 25 0 298 321 68 31 chr4 69693077 69693239 -114595423 + MER5A DNA MER1_type 7 174 -15 264 263 0 0 chr4 69693540 69693597 -114595065 + MIR SINE MIR 79 135 -127 913 306 153 30 chr4 69693842 69694450 -114594212 + L2 LINE L2 2125 2807 -507 195 29 114 14 chr4 69694518 69694588 -114594074 + (TA)n Simple_repeat Simple_repeat 1 77 0 422 51 120 0 chr4 69694699 69694857 -114593805 + (TA)n Simple_repeat Simple_repeat 1 177 0 22 35 0 0 chr4 69694857 69694886 -114593776 + AT_rich Low_complexity Low_complexity 1 29 0 209 91 45 61 chr4 69694888 69695020 -114593642 + (TTATA)n Simple_repeat Simple_repeat 5 134 0 255 188 0 0 chr4 69695023 69695071 -114593591 - Tigger3(Golem) DNA MER2_type -130 2899 2852 358 342 17 0 chr4 69695084 69695201 -114593461 - MER5B DNA MER1_type -59 119 1 701 169 169 0 chr4 69695224 69695372 -114593290 - MER5A DNA MER1_type -16 173 1 471 377 37 22 chr4 69695374 69695647 -114593015 + L2 LINE L2 2804 3080 -233 827 211 6 0 chr4 69696137 69696317 -114592345 - L1MA6 LINE L1 0 6300 6120 386 307 33 13 chr4 69696588 69696738 -114591924 + L2 LINE L2 3160 3312 -1 470 274 122 69 chr4 69697126 69697429 -114591233 - L2 LINE L2 0 3313 2995 201 39 0 0 chr4 69697852 69697878 -114590784 + (TC)n Simple_repeat Simple_repeat 2 27 0 * 432 55 0 0 chr4 69697877 69697932 -114590730 + (TA)n Simple_repeat Simple_repeat 1 55 0 279 0 0 0 chr4 69698048 69698079 -114590583 + (CA)n Simple_repeat Simple_repeat 2 32 0 23 68 0 0 chr4 69698123 69698167 -114590495 + AT_rich Low_complexity Low_complexity 1 44 0 363 331 8 38 chr4 69699590 69699723 -114588939 - MIR3 SINE MIR -68 140 12 448 261 266 5 chr4 69699969 69700074 -114588588 + MIR SINE MIR 12 88 -174 217 25 0 75 chr4 69700074 69700114 -114588548 + (TAA)n Simple_repeat Simple_repeat 3 39 0 448 261 266 5 chr4 69700114 69700207 -114588455 + MIR SINE MIR 88 262 0 189 0 0 0 chr4 69701084 69701105 -114587557 + (TAATG)n Simple_repeat Simple_repeat 4 24 0 239 281 73 31 chr4 69703076 69703172 -114585490 - MIR SINE MIR 0 262 163 2143 128 0 0 chr4 69703359 69703655 -114585007 + AluSx SINE Alu 7 302 -10 44119 41 0 1 chr4 69703657 69709816 -114578846 + L1PA3 LINE L1 2 6155 0 213 196 0 0 chr4 69710548 69710594 -114578068 + GA-rich Low_complexity Low_complexity 1 46 0 1430 187 24 0 chr4 69710678 69710929 -114577733 + L1PB4 LINE L1 5867 6123 -33 316 183 183 0 chr4 69711675 69711746 -114576916 - L1MC1 LINE L1 -15 6318 6235 13808 152 19 12 chr4 69711896 69712131 -114576531 - L1MA1 LINE L1 0 6302 6070 213 39 0 0 chr4 69712131 69712157 -114576505 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2024 107 0 53 chr4 69712157 69712457 -114576205 - AluSx SINE Alu -28 284 1 13808 152 19 12 chr4 69712457 69715885 -114572777 - L1MA1 LINE L1 -231 6071 2608 200 280 0 0 chr4 69717503 69717553 -114571109 + (CATA)n Simple_repeat Simple_repeat 3 52 0 16901 193 27 23 chr4 69717668 69721324 -114567338 + L1PA16 LINE L1 12 3652 -3217 2072 124 10 3 chr4 69721324 69721631 -114567031 + AluSg1 SINE Alu 1 309 0 16901 193 27 23 chr4 69721631 69721732 -114566930 + L1PA16 LINE L1 3652 3751 -3118 1361 105 0 0 chr4 69721732 69721923 -114566739 + L1PA7 LINE L1 5962 6152 -2 16901 193 27 23 chr4 69721923 69725015 -114563647 + L1PA16 LINE L1 3751 6860 -9 397 282 33 22 chr4 69725506 69725687 -114562975 - MER5A DNA MER1_type -2 187 5 201 74 0 0 chr4 69725964 69725991 -114562671 + (TG)n Simple_repeat Simple_repeat 1 27 0 222 91 0 0 chr4 69725991 69726024 -114562638 + (GA)n Simple_repeat Simple_repeat 2 34 0 23 33 0 0 chr4 69727106 69727136 -114561526 + AT_rich Low_complexity Low_complexity 1 30 0 193 293 35 17 chr4 69728637 69728695 -114559967 + L2 LINE L2 3204 3262 -10 10554 234 58 22 chr4 69729553 69734776 -114553886 + L1MA9 LINE L1 1568 6673 -639 2534 180 22 0 chr4 69734780 69735378 -114553284 - MER44D DNA MER2_type -8 597 1 2944 166 56 20 chr4 69735386 69735995 -114552667 + L1MA9 LINE L1 6683 7313 -20 342 321 63 14 chr4 69738357 69738521 -114550141 + MIR SINE MIR 36 205 -57 1981 195 0 3 chr4 69738569 69738933 -114549729 - MLT1A1 LTR MaLR -2 363 1 2381 82 3 0 chr4 69740604 69740908 -114547754 - AluY SINE Alu -5 306 2 1382 264 77 6 chr4 69741330 69741799 -114546863 - L1M4 LINE L1 -1811 4335 3834 378 273 80 0 chr4 69741807 69741895 -114546767 + MER5A DNA MER1_type 9 103 -86 8964 227 48 29 chr4 69741907 69743938 -114544724 - L1MD1 LINE L1 0 6636 4645 22736 35 0 0 chr4 69743938 69747485 -114541177 - L1PA3 LINE L1 0 6155 2610 8964 227 48 29 chr4 69747485 69749601 -114539061 - L1MD1 LINE L1 -1991 4645 2400 2642 20 0 3 chr4 69749601 69749904 -114538758 - AluYa5 SINE Alu -9 302 1 8964 227 48 29 chr4 69749904 69750049 -114538613 - L1MD1 LINE L1 -4236 2400 2259 5053 208 93 51 chr4 69750056 69751482 -114537180 - L1MD1 LINE L1 -5017 1523 39 27 49 0 0 chr4 69751594 69751635 -114537027 + AT_rich Low_complexity Low_complexity 1 41 0 5401 211 74 22 chr4 69752716 69754093 -114534569 - Charlie1a DNA MER1_type -1 1454 6 234 173 39 19 chr4 69754153 69754241 -114534421 + (TA)n Simple_repeat Simple_repeat 1 93 -13 279 0 0 0 chr4 69754241 69754272 -114534390 + (TG)n Simple_repeat Simple_repeat 2 32 0 234 173 39 19 chr4 69754272 69754287 -114534375 + (TA)n Simple_repeat Simple_repeat 93 106 0 2410 158 14 32 chr4 69754596 69755038 -114533624 - Tigger2a DNA MER2_type 0 434 1 490 323 48 0 chr4 69755127 69755316 -114533346 - MIR SINE MIR -14 248 51 185 0 40 0 chr4 69756874 69756899 -114531763 + (TTG)n Simple_repeat Simple_repeat 2 27 0 235 164 66 0 chr4 69757615 69757676 -114530986 + (TGAA)n Simple_repeat Simple_repeat 1 65 0 296 321 176 15 chr4 69758204 69758335 -114530327 + MIR SINE MIR 3 154 -108 2111 158 35 0 chr4 69758479 69758827 -114529835 - MER46B DNA MER2_type -1 235 1 35 41 0 0 chr4 69759280 69759329 -114529333 + AT_rich Low_complexity Low_complexity 1 49 0 399 269 34 23 chr4 69759581 69759756 -114528906 + L1ME LINE L1 5601 5777 -344 214 242 32 16 chr4 69759773 69759835 -114528827 - L2 LINE L2 -9 3263 3201 23 54 0 0 chr4 69759965 69760002 -114528660 + AT_rich Low_complexity Low_complexity 1 37 0 190 250 39 0 chr4 69760334 69760386 -114528276 + L3 LINE CR1 442 495 -1082 651 268 148 32 chr4 69760706 69760990 -114527672 - L2 LINE L2 -1 3312 2996 644 222 0 0 chr4 69761237 69761354 -114527308 + Tigger3(Golem) DNA MER2_type 1 117 -2912 3817 139 68 11 chr4 69761363 69762088 -114526574 + Tigger3(Golem) DNA MER2_type 2264 3029 0 195 396 22 0 chr4 69763299 69763390 -114525272 - L2 LINE L2 -4 3268 3176 825 306 97 36 chr4 69763680 69764287 -114524375 - L2 LINE L2 0 3313 2683 729 288 180 38 chr4 69764288 69764454 -114524208 - L2 LINE L2 0 3313 3172 2330 140 20 0 chr4 69764454 69764811 -114523851 + THE1B LTR MaLR 1 364 0 729 288 180 38 chr4 69764811 69765363 -114523299 - L2 LINE L2 -141 3172 2439 198 288 120 27 chr4 69765382 69765556 -114523106 + L2 LINE L2 2044 2234 -1080 392 358 80 4 chr4 69765556 69765782 -114522880 + MIR SINE MIR 2 244 -18 191 340 151 38 chr4 69766236 69766474 -114522188 + L2 LINE L2 2806 3070 -202 542 71 0 24 chr4 69767806 69767890 -114520772 - L1PA8 LINE L1 -327 5845 5764 1909 229 39 14 chr4 69767903 69768397 -114520265 - MER69B DNA AcHobo -246 980 475 22 88 0 0 chr4 69768763 69768820 -114519842 + AT_rich Low_complexity Low_complexity 1 57 0 23 54 0 0 chr4 69768938 69768975 -114519687 + AT_rich Low_complexity Low_complexity 1 37 0 183 80 0 0 chr4 69769207 69769232 -114519430 + (TA)n Simple_repeat Simple_repeat 1 25 0 213 39 0 0 chr4 69769237 69769263 -114519399 + (TATAA)n Simple_repeat Simple_repeat 5 30 0 907 268 9 5 chr4 69769557 69769777 -114518885 + MIR SINE MIR 42 262 0 22 0 0 0 chr4 69769988 69770010 -114518652 + AT_rich Low_complexity Low_complexity 1 22 0 235 296 72 16 chr4 69770021 69770146 -114518516 + MER103 DNA DNA 8 139 -27 42 20 0 0 chr4 69770808 69770857 -114517805 + AT_rich Low_complexity Low_complexity 1 49 0 1296 203 43 18 chr4 69771016 69771321 -114517341 - AluJo SINE Alu 0 312 1 447 19 0 0 chr4 69772118 69772170 -114516492 + (TTCTC)n Simple_repeat Simple_repeat 4 55 0 246 95 0 0 chr4 69772172 69772214 -114516448 + (TTCC)n Simple_repeat Simple_repeat 1 42 0 1162 307 139 31 chr4 69773274 69774115 -114514547 - L2 LINE L2 -389 2925 1994 1928 213 68 34 chr4 69774117 69774708 -114513954 - MER69 DNA AcHobo -2 2524 1914 942 276 91 18 chr4 69774714 69775055 -114513607 - MER69 DNA AcHobo -842 384 19 180 338 0 0 chr4 69775060 69775140 -114513522 - L2 LINE L2 -1319 1995 1916 192 319 181 0 chr4 69776307 69776401 -114512261 - L3 LINE CR1 -25 1552 1442 364 281 82 41 chr4 69776483 69776629 -114512033 - L3 LINE CR1 -294 1283 1132 779 280 97 43 chr4 69776646 69777181 -114511481 + MLT1L LTR MaLR 46 609 -6 2155 177 35 20 chr4 69777913 69778371 -114510291 - L1MB8 LINE L1 -2 6176 5712 22 35 0 0 chr4 69779492 69779521 -114509141 + AT_rich Low_complexity Low_complexity 1 29 0 486 260 24 16 chr4 69779706 69779829 -114508833 + L2 LINE L2 3189 3312 -1 222 347 41 16 chr4 69780145 69780266 -114508396 - MIR SINE MIR -104 158 35 1723 184 82 60 chr4 69780466 69780879 -114507783 + MSTB LTR MaLR 1 422 -4 767 258 87 9 chr4 69780894 69781169 -114507493 + MLT1G LTR MaLR 151 531 -36 686 233 60 57 chr4 69781525 69781843 -114506819 + L1ME2 LINE L1 5070 5388 -758 1450 202 45 26 chr4 69781845 69782222 -114506440 + L1ME2 LINE L1 5777 6160 -4 22 70 0 0 chr4 69783504 69783547 -114505115 + AT_rich Low_complexity Low_complexity 1 43 0 25 31 0 0 chr4 69783933 69783965 -114504697 + AT_rich Low_complexity Low_complexity 1 32 0 405 228 119 10 chr4 69784307 69784408 -114504254 + MER81 DNA DNA 2 113 -1 1921 175 76 24 chr4 69784410 69784872 -114503790 + Charlie1b DNA MER1_type 38 523 0 7258 48 2 3 chr4 69786118 69787519 -114501143 - L1PA5 LINE L1 0 6154 4762 1321 221 48 17 chr4 69787745 69788035 -114500627 - MER82 DNA MER2_type 0 653 355 1466 185 64 122 chr4 69788103 69788618 -114500044 - MLT1E1 LTR MaLR -177 459 1 229 348 0 0 chr4 69788621 69788690 -114499972 - MER5B DNA MER1_type -69 109 41 374 352 46 0 chr4 69788712 69788820 -114499842 + MIR3 SINE MIR 15 127 -81 611 289 21 11 chr4 69790551 69790741 -114497921 - LTR33 LTR ERVL -7 514 323 596 261 64 11 chr4 69790864 69791052 -114497610 - MLT1J2 LTR MaLR -252 198 1 222 186 23 0 chr4 69791052 69791095 -114497567 - L2 LINE L2 -841 2473 2430 202 167 15 30 chr4 69791209 69791275 -114497387 + (CTA)n Simple_repeat Simple_repeat 1 65 0 503 274 31 35 chr4 69791337 69791416 -114497246 + L2 LINE L2 3077 3155 -158 2050 143 55 3 chr4 69791416 69791759 -114496903 - MER46B DNA MER2_type 0 236 1 503 274 31 35 chr4 69791759 69791905 -114496757 + L2 LINE L2 3155 3301 -12 1627 254 80 23 chr4 69792452 69793047 -114495615 - MLT1G LTR MaLR -2 588 1 479 248 248 0 chr4 69793118 69793263 -114495399 + MER5A DNA MER1_type 9 189 0 466 315 49 27 chr4 69794003 69794187 -114494475 + MER5A DNA MER1_type 1 188 -1 587 315 22 11 chr4 69794326 69794504 -114494158 - MIR3 SINE MIR -9 199 20 240 216 0 20 chr4 69795468 69795519 -114493143 + CT-rich Low_complexity Low_complexity 4 53 0 614 157 157 0 chr4 69796012 69796133 -114492529 + MLT1D LTR MaLR 366 505 0 1522 196 3 26 chr4 69796221 69796533 -114492129 - AluJb SINE Alu -7 305 1 7318 41 6 0 chr4 69796731 69797800 -114490862 + L1PA4 LINE L1 5082 6155 0 30 27 0 0 chr4 69797810 69797847 -114490815 + AT_rich Low_complexity Low_complexity 1 37 0 396 194 0 32 chr4 69799471 69799564 -114489098 + L1PA12 LINE L1 6066 6155 -13 26 0 0 0 chr4 69800682 69800708 -114487954 + AT_rich Low_complexity Low_complexity 1 26 0 199 253 61 40 chr4 69801544 69801643 -114487019 + L2 LINE L2 1983 2083 -1231 386 233 35 52 chr4 69801713 69801829 -114486833 - L2 LINE L2 -22 3291 3178 336 289 70 9 chr4 69801915 69802029 -114486633 - L2 LINE L2 -424 2890 2770 1064 264 53 88 chr4 69802414 69803061 -114485601 - L2 LINE L2 -5 3308 2688 21 0 0 0 chr4 69803240 69803261 -114485401 + AT_rich Low_complexity Low_complexity 1 21 0 1473 105 50 0 chr4 69803409 69803628 -114485034 + MER30 DNA MER1_type 1 230 0 253 353 49 8 chr4 69803779 69803901 -114484761 - L2 LINE L2 -9 3263 3137 331 363 53 35 chr4 69804016 69804187 -114484475 - L2 LINE L2 -189 3083 2910 326 286 104 0 chr4 69804224 69804378 -114484284 - L2 LINE L2 -431 2883 2714 827 294 92 16 chr4 69804385 69804753 -114483909 + MLT1J1 LTR MaLR 4 399 -47 2378 61 0 10 chr4 69805193 69805489 -114483173 - AluY SINE Alu -18 293 1 282 138 0 0 chr4 69806913 69806971 -114481691 + (TA)n Simple_repeat Simple_repeat 2 59 0 28 29 0 0 chr4 69807523 69807558 -114481104 + AT_rich Low_complexity Low_complexity 1 35 0 471 330 98 13 chr4 69809330 69809566 -114479096 + MIR SINE MIR 7 262 0 25 31 0 0 chr4 69810741 69810773 -114477889 + AT_rich Low_complexity Low_complexity 1 32 0 230 0 0 32 chr4 69814039 69814070 -114474592 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 2286 83 94 0 chr4 69814070 69814409 -114474253 - L1PA7 LINE L1 -11 6143 5773 267 114 0 0 chr4 69814726 69814770 -114473892 + (TG)n Simple_repeat Simple_repeat 1 44 0 265 172 52 0 chr4 69817717 69817775 -114470887 - L1MB1 LINE L1 -2 6187 6127 * 4159 174 41 29 chr4 69817769 69818267 -114470395 - L1M3 LINE L1 -346 5822 5331 323 23 23 0 chr4 69818267 69818311 -114470351 + (TG)n Simple_repeat Simple_repeat 2 46 0 4159 174 41 29 chr4 69818311 69819134 -114469528 - L1M3 LINE L1 -837 5331 4478 25 0 0 0 chr4 69819391 69819416 -114469246 + AT_rich Low_complexity Low_complexity 1 25 0 577 251 62 17 chr4 69821214 69821393 -114467269 + MIR SINE MIR 63 249 -13 2382 96 0 0 chr4 69821505 69821852 -114466810 - AluSx SINE Alu 0 347 1 1017 198 42 0 chr4 69821946 69822138 -114466524 + MER3 DNA MER1_type 5 204 -5 338 250 0 0 chr4 69822220 69822272 -114466390 + T-rich Low_complexity Low_complexity 1 52 0 235 360 145 18 chr4 69822449 69822677 -114465985 - L2 LINE L2 -623 2691 2435 545 291 85 24 chr4 69822841 69823082 -114465580 - MIR SINE MIR -7 255 3 266 289 83 86 chr4 69823950 69824251 -114464411 - L2 LINE L2 -3 3310 3011 2186 108 0 13 chr4 69825705 69826012 -114462650 + AluSq SINE Alu 1 303 -10 180 0 0 0 chr4 69826108 69826128 -114462534 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 193 57 57 0 chr4 69826404 69826439 -114462223 + (CAA)n Simple_repeat Simple_repeat 2 38 0 439 287 102 83 chr4 69826610 69826972 -114461690 + L2 LINE L2 2931 3299 -14 797 195 138 0 chr4 69827344 69827539 -114461123 - MIR SINE MIR -35 227 6 184 369 0 12 chr4 69827762 69827846 -114460816 - L3 LINE CR1 -849 728 646 404 220 83 182 chr4 69828346 69828610 -114460052 + MIR SINE MIR 5 242 -20 269 333 43 11 chr4 69829646 69829739 -114458923 - MIR SINE MIR -68 140 45 21 57 0 0 chr4 69830191 69830226 -114458436 + AT_rich Low_complexity Low_complexity 1 35 0 314 301 52 44 chr4 69830942 69831078 -114457584 - L3 LINE CR1 -178 1399 1263 405 312 159 0 chr4 69831168 69831338 -114457324 - MIR SINE MIR -56 206 10 301 271 123 59 chr4 69831317 69831553 -114457109 - L3 LINE CR1 -361 1216 966 * 346 218 28 7 chr4 69831733 69831875 -114456787 + (TA)n Simple_repeat Simple_repeat 2 146 0 459 339 22 0 chr4 69831880 69832194 -114456468 + (CATATA)n Simple_repeat Simple_repeat 1 321 0 383 235 28 22 chr4 69832201 69832380 -114456282 + (CATA)n Simple_repeat Simple_repeat 1 180 0 276 266 0 24 chr4 69832395 69832519 -114456143 + (CATA)n Simple_repeat Simple_repeat 1 121 0 335 408 25 0 chr4 69832527 69832684 -114455978 + (CA)n Simple_repeat Simple_repeat 1 161 0 * 397 344 5 43 chr4 69832595 69832781 -114455881 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 * 497 272 0 77 chr4 69832659 69832854 -114455808 + (TA)n Simple_repeat Simple_repeat 1 180 0 376 223 21 32 chr4 69832942 69833036 -114455626 + L2 LINE L2 3221 3313 0 1650 165 4 11 chr4 69833088 69833360 -114455302 - AluJo SINE Alu -16 296 27 1972 104 0 60 chr4 69833924 69834258 -114454404 - AluSx SINE Alu 0 317 2 257 359 17 8 chr4 69834678 69834795 -114453867 + MIR SINE MIR 23 140 -122 261 0 0 0 chr4 69834942 69834971 -114453691 + (TG)n Simple_repeat Simple_repeat 2 30 0 1869 120 7 4 chr4 69834975 69835250 -114453412 - AluSx SINE Alu -36 276 1 21 36 0 0 chr4 69835634 69835662 -114453000 + AT_rich Low_complexity Low_complexity 1 28 0 210 395 18 9 chr4 69836532 69836641 -114452021 + L2 LINE L2 2565 2674 -640 180 0 0 0 chr4 69836701 69836721 -114451941 + (CA)n Simple_repeat Simple_repeat 1 20 0 24 0 0 0 chr4 69836986 69837010 -114451652 + AT_rich Low_complexity Low_complexity 1 24 0 2150 99 3 0 chr4 69837323 69837606 -114451056 + AluSq SINE Alu 14 297 -16 2393 100 0 0 chr4 69839311 69839621 -114449041 + AluSx SINE Alu 1 310 -2 182 317 59 30 chr4 69840320 69840421 -114448241 + MIR3 SINE MIR 4 107 -101 219 318 82 36 chr4 69840625 69840735 -114447927 - L3 LINE CR1 -10 1567 1453 357 211 0 0 chr4 69840854 69840925 -114447737 - MER116 DNA Mariner -4 76 6 302 335 70 49 chr4 69841372 69841557 -114447105 - L3 LINE CR1 -418 1159 971 24 0 0 0 chr4 69841627 69841651 -114447011 + AT_rich Low_complexity Low_complexity 1 24 0 543 265 163 19 chr4 69842017 69842232 -114446430 + MIR SINE MIR 17 262 0 3041 181 18 2 chr4 69843292 69843843 -114444819 + MER68 LTR ERV1 1 560 -2 355 320 45 45 chr4 69845127 69845327 -114443335 + MIR SINE MIR 1 200 -62 280 317 30 30 chr4 69845739 69845840 -114442822 + MIR SINE MIR 6 106 -156 22 0 0 0 chr4 69846645 69846667 -114441995 + AT_rich Low_complexity Low_complexity 1 22 0 940 78 28 14 chr4 69846667 69846809 -114441853 - L1PA16 LINE L1 -3 6163 6020 2390 287 74 39 chr4 69846833 69847336 -114441326 - L1ME LINE L1 -3917 2344 1860 2253 76 0 38 chr4 69847336 69847650 -114441012 - AluY SINE Alu -9 302 1 2390 287 74 39 chr4 69847650 69849363 -114439299 - L1ME LINE L1 -4401 1860 7 3364 174 46 0 chr4 69849507 69850133 -114438529 - L1PA16 LINE L1 -17 6149 5495 778 347 66 47 chr4 69850406 69851522 -114437140 - HERVL LTR ERVL -1426 4228 3047 1038 310 67 47 chr4 69852094 69852688 -114435974 - HERVL LTR ERVL -3056 2708 2103 211 333 0 0 chr4 69852969 69853029 -114435633 - MIR SINE MIR -57 205 146 934 262 87 31 chr4 69853543 69854089 -114434573 + MLT1E3 LTR MaLR 1 620 -4 705 241 18 24 chr4 69856097 69856267 -114432395 + MER5A DNA MER1_type 19 187 -2 1077 171 102 5 chr4 69856421 69856637 -114432025 + MLT1A1 LTR MaLR 129 365 0 639 265 115 49 chr4 69857176 69857463 -114431199 + L2 LINE L2 3000 3305 -8 1718 170 7 3 chr4 69858838 69859173 -114429489 - AluJb SINE Alu 0 336 1 944 265 40 28 chr4 69859177 69859810 -114428852 - L1ME3A LINE L1 -190 5980 4529 521 261 88 11 chr4 69859956 69860216 -114428446 - L1ME3A LINE L1 -1631 4515 4236 * 1546 279 107 33 chr4 69860213 69861312 -114427350 - L1MEc LINE L1 -2634 3512 2495 330 26 0 0 chr4 69861312 69861351 -114427311 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1546 279 107 33 chr4 69861351 69861520 -114427142 - L1MEc LINE L1 -3651 2495 2340 1620 230 56 5 chr4 69861520 69861964 -114426698 - MLT1C LTR MaLR 0 467 1 1546 279 107 33 chr4 69861964 69862021 -114426641 - L1MEc LINE L1 -3806 2340 2110 1500 127 0 9 chr4 69862024 69862244 -114426418 - AluSg/x SINE Alu -14 298 81 3550 107 7 50 chr4 69862244 69862840 -114425822 - LTR66 LTR ERVL 0 610 41 2057 131 0 6 chr4 69863047 69863359 -114425303 - AluSx SINE Alu 0 312 3 344 296 86 54 chr4 69863489 69863675 -114424987 + MIR SINE MIR 51 242 -20 213 292 42 0 chr4 69863873 69863945 -114424717 + MIR SINE MIR 117 191 -71 23 0 0 0 chr4 69864625 69864648 -114424014 + AT_rich Low_complexity Low_complexity 1 23 0 208 309 62 0 chr4 69864872 69864953 -114423709 - L3 LINE CR1 -841 736 651 372 297 62 0 chr4 69865387 69865515 -114423147 + MIR3 SINE MIR 67 202 -6 24 0 0 0 chr4 69865548 69865572 -114423090 + AT_rich Low_complexity Low_complexity 1 24 0 420 215 19 47 chr4 69866648 69866755 -114421907 - L2 LINE L2 -1 3312 3209 1717 122 0 41 chr4 69867878 69868148 -114420514 + AluSx SINE Alu 37 295 -17 631 332 34 13 chr4 69870847 69871085 -114417577 - MIR SINE MIR 0 262 20 564 254 32 38 chr4 69871242 69871279 -114417383 + MIR SINE MIR 35 71 -191 2303 86 0 10 chr4 69871279 69871580 -114417082 - AluSg SINE Alu -12 298 1 564 254 32 38 chr4 69871580 69871727 -114416935 + MIR SINE MIR 71 218 -44 1947 128 0 17 chr4 69872604 69872922 -114415740 - AluSx SINE Alu 0 313 1 1605 239 73 31 chr4 69873617 69874098 -114414564 - MLT1D LTR MaLR 0 505 5 24 32 0 0 chr4 69874667 69874698 -114413964 + AT_rich Low_complexity Low_complexity 1 31 0 249 270 58 98 chr4 69874874 69875048 -114413614 + MIR SINE MIR 50 216 -46 470 282 15 8 chr4 69876381 69876512 -114412150 - MIR SINE MIR -24 238 107 417 223 155 0 chr4 69877858 69877961 -114410701 - MER94 DNA DNA -15 119 1 22 0 0 0 chr4 69878061 69878083 -114410579 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 69882765 69882793 -114405869 + AT_rich Low_complexity Low_complexity 1 28 0 517 260 17 0 chr4 69883435 69883608 -114405054 + (TATATG)n Simple_repeat Simple_repeat 5 180 0 245 300 8 46 chr4 69885533 69885663 -114402999 - L1MEc LINE L1 -4427 1969 1845 2126 80 0 0 chr4 69885945 69886219 -114402443 - AluY SINE Alu -12 299 26 194 174 22 0 chr4 69886317 69886363 -114402299 + (TATG)n Simple_repeat Simple_repeat 2 48 0 182 217 22 22 chr4 69886832 69886924 -114401738 + GA-rich Low_complexity Low_complexity 4 95 0 197 400 0 0 chr4 69887543 69887608 -114401054 + L2 LINE L2 3208 3272 0 570 259 0 78 chr4 69888130 69888296 -114400366 - MER91B DNA MER1_type -37 153 1 365 247 89 63 chr4 69888713 69888871 -114399791 - L2 LINE L2 -4 3309 3148 707 146 0 0 chr4 69888933 69889043 -114399619 + FLAM_C SINE Alu 9 118 -25 2296 95 3 0 chr4 69889186 69889481 -114399181 - AluSx SINE Alu -16 296 1 270 136 0 0 chr4 69889870 69889914 -114398748 + (CAT)n Simple_repeat Simple_repeat 3 46 0 420 187 24 114 chr4 69890259 69890425 -114398237 - L1M4 LINE L1 -1487 4659 4509 191 250 118 15 chr4 69892508 69892576 -114396086 - MIR SINE MIR -61 201 127 22 35 0 0 chr4 69893959 69893988 -114394674 + AT_rich Low_complexity Low_complexity 1 29 0 206 241 0 0 chr4 69894790 69894844 -114393818 + T-rich Low_complexity Low_complexity 1 54 0 301 277 148 12 chr4 69895991 69896207 -114392455 - L1ME3 LINE L1 -4 6166 5923 1126 293 69 24 chr4 69896239 69896903 -114391759 - L1ME3 LINE L1 -166 5955 5258 375 270 55 10 chr4 69897062 69897262 -114391400 - L1M4 LINE L1 -1796 4350 4142 445 336 0 0 chr4 69897274 69897399 -114391263 + MER82 DNA MER2_type 524 648 -5 197 244 0 0 chr4 69897685 69897726 -114390936 - L2 LINE L2 0 3313 3273 807 249 47 50 chr4 69897994 69898326 -114390336 - MLT1A1 LTR MaLR -4 361 28 22 0 0 0 chr4 69898514 69898536 -114390126 + AT_rich Low_complexity Low_complexity 1 22 0 293 216 0 0 chr4 69899682 69899733 -114388929 + L2 LINE L2 3263 3313 0 270 336 35 26 chr4 69899919 69900032 -114388630 - MIR3 SINE MIR 0 208 95 296 321 48 6 chr4 69900040 69900205 -114388457 - LTR67 LTR ERVL -7 550 379 425 385 96 21 chr4 69900883 69901319 -114387343 + L2 LINE L2 2804 3272 0 3501 255 19 9 chr4 69902566 69903496 -114385166 + L1MEc LINE L1 37 976 -5420 461 318 60 13 chr4 69904567 69904718 -114383944 - MIR3 SINE MIR -9 199 42 2154 226 70 14 chr4 69904732 69905306 -114383356 - MLT1E2 LTR MaLR -10 616 11 463 285 215 42 chr4 69905446 69905730 -114382932 + L2 LINE L2 2978 3310 -3 594 323 82 40 chr4 69906560 69906938 -114381724 - MLT1K LTR MaLR -67 521 128 526 230 32 27 chr4 69907026 69907213 -114381449 + MER53 DNA DNA 1 188 -1 810 291 137 14 chr4 69907553 69907917 -114380745 + MLT1L LTR MaLR 207 615 0 752 271 62 90 chr4 69908840 69909341 -114379321 - MLT1J LTR MaLR 0 511 25 1167 195 53 84 chr4 69910178 69910312 -114378350 - LTR8A LTR ERV1 -94 633 496 2742 187 16 62 chr4 69910312 69910954 -114377708 + LTR9 LTR ERV1 1 612 0 1167 195 53 84 chr4 69910954 69911138 -114377524 - LTR8A LTR ERV1 -231 496 327 2222 99 3 29 chr4 69911138 69911450 -114377212 + AluSx SINE Alu 1 304 -8 1167 195 53 84 chr4 69911450 69911524 -114377138 - LTR8A LTR ERV1 -400 327 252 236 130 22 0 chr4 69912932 69912978 -114375684 + (TATG)n Simple_repeat Simple_repeat 1 47 0 23 0 0 0 chr4 69913241 69913264 -114375398 + AT_rich Low_complexity Low_complexity 1 23 0 301 254 127 25 chr4 69915190 69915308 -114373354 + MIR SINE MIR 74 203 -59 418 350 17 8 chr4 69915742 69915885 -114372777 + MIR3 SINE MIR 13 158 -50 22 35 0 0 chr4 69916229 69916258 -114372404 + AT_rich Low_complexity Low_complexity 1 29 0 848 153 20 137 chr4 69916471 69916719 -114371943 + MER20 DNA MER1_type 1 219 0 21 0 0 0 chr4 69917769 69917790 -114370872 + AT_rich Low_complexity Low_complexity 1 21 0 274 336 39 10 chr4 69918745 69918849 -114369813 - L2 LINE L2 -6 3307 3201 231 372 0 23 chr4 69919085 69919171 -114369491 - L2 LINE L2 -52 3220 3137 524 251 61 76 chr4 69919328 69919738 -114368924 - L1MDa LINE L1 -4870 1670 1267 1234 226 81 13 chr4 69920534 69920928 -114367734 - L1M4 LINE L1 -797 5349 4929 1163 240 85 39 chr4 69920928 69921291 -114367371 - MLT1F1 LTR MaLR 0 567 188 468 206 64 14 chr4 69921368 69921509 -114367153 - L1M4 LINE L1 -1213 4933 4786 744 230 4 22 chr4 69922635 69922831 -114365831 - L1PB4 LINE L1 0 6151 5961 423 0 0 0 chr4 69922914 69922961 -114365701 + (CA)n Simple_repeat Simple_repeat 2 48 0 66 35 0 0 chr4 69923145 69923232 -114365430 + AT_rich Low_complexity Low_complexity 1 87 0 580 296 148 0 chr4 69924174 69924370 -114364292 - MIR SINE MIR -36 226 2 25 0 0 0 chr4 69924559 69924584 -114364078 + AT_rich Low_complexity Low_complexity 1 25 0 183 338 143 13 chr4 69924684 69924838 -114363824 + L2 LINE L2 2464 2637 -677 1717 249 65 24 chr4 69924928 69925542 -114363120 + L1MC4 LINE L1 7397 8035 -7 309 284 52 26 chr4 69926026 69926142 -114362520 + L2 LINE L2 3195 3313 0 913 300 69 56 chr4 69926437 69927173 -114361489 - HAL1 LINE L1 0 2507 1762 2305 297 141 31 chr4 69927194 69927421 -114361241 - HAL1 LINE L1 -941 1566 1365 2371 138 13 47 chr4 69927421 69927893 -114360769 - L1MA7 LINE L1 -5 6286 5831 2305 297 141 31 chr4 69927893 69929034 -114359628 - HAL1 LINE L1 -1142 1365 48 263 333 56 0 chr4 69929732 69929858 -114358804 + HAL1 LINE L1 420 552 -1955 5464 27 2 0 chr4 69930122 69930761 -114357901 + L1PA3 LINE L1 5513 6152 -3 1273 194 112 27 chr4 69932065 69932430 -114356232 - MSTD LTR MaLR 0 396 1 387 287 69 74 chr4 69932787 69933003 -114355659 - MIR SINE MIR -24 238 24 435 52 0 0 chr4 69933037 69933095 -114355567 + (TG)n Simple_repeat Simple_repeat 1 58 0 2246 105 0 0 chr4 69933848 69934134 -114354528 + AluSx SINE Alu 1 286 -26 264 221 86 21 chr4 69934177 69934317 -114354345 + (TCTCTG)n Simple_repeat Simple_repeat 1 149 0 460 304 1 43 chr4 69934408 69934690 -114353972 + CT-rich Low_complexity Low_complexity 1 293 -443 1632 181 58 3 chr4 69934690 69935033 -114353629 - MLT1A1 LTR MaLR 0 365 4 460 304 1 43 chr4 69935033 69935176 -114353486 + CT-rich Low_complexity Low_complexity 293 736 0 21 36 0 0 chr4 69937223 69937251 -114351411 + AT_rich Low_complexity Low_complexity 1 28 0 1800 70 0 9 chr4 69937552 69937780 -114350882 - AluY SINE Alu -13 298 73 21 0 0 0 chr4 69938229 69938250 -114350412 + AT_rich Low_complexity Low_complexity 1 21 0 343 303 91 17 chr4 69941557 69941732 -114346930 + MIR SINE MIR 73 260 -2 2047 127 3 13 chr4 69942307 69942622 -114346040 + AluSx SINE Alu 1 312 0 23 0 0 0 chr4 69942806 69942829 -114345833 + AT_rich Low_complexity Low_complexity 1 23 0 453 306 39 47 chr4 69943507 69943739 -114344923 + MIR SINE MIR 33 262 0 324 343 67 45 chr4 69944393 69944571 -114344091 - MIR3 SINE MIR -17 191 10 198 324 32 73 chr4 69945249 69945468 -114343194 + L2 LINE L2 1698 1907 -1407 806 339 109 4 chr4 69945482 69945976 -114342686 - L2 LINE L2 0 3313 2766 304 307 123 28 chr4 69945990 69946169 -114342493 + MIR SINE MIR 2 197 -65 191 200 33 17 chr4 69946309 69946369 -114342293 + L2 LINE L2 2055 2115 -1199 966 259 46 7 chr4 69947507 69947789 -114340873 + L2 LINE L2 2180 2472 -842 1304 167 44 4 chr4 69947789 69948016 -114340646 - MLT1D LTR MaLR 0 505 270 21 36 0 0 chr4 69948589 69948617 -114340045 + AT_rich Low_complexity Low_complexity 1 28 0 1777 175 3 0 chr4 69948702 69948993 -114339669 + AluSx SINE Alu 1 292 -20 354 98 0 0 chr4 69948993 69949044 -114339618 + (GA)n Simple_repeat Simple_repeat 1 51 0 1186 272 69 38 chr4 69949489 69949967 -114338695 + L2 LINE L2 291 783 -2531 1100 220 88 20 chr4 69949971 69950276 -114338386 - MLT1C LTR MaLR -136 331 6 1733 328 123 31 chr4 69950327 69950660 -114338002 + L2 LINE L2 1545 1846 -1468 1322 179 85 115 chr4 69950660 69951085 -114337577 - MLT2D LTR ERVL 0 414 3 1733 328 123 31 chr4 69951085 69951999 -114336663 + L2 LINE L2 1846 2906 -408 273 29 0 0 chr4 69952276 69952310 -114336352 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 6992 58 9 2 chr4 69952310 69953486 -114335176 - L1PA5 LINE L1 -11 6143 4964 4079 69 0 0 chr4 69953486 69954021 -114334641 + L1PA5 LINE L1 4446 4980 -1166 1772 93 25 4 chr4 69954943 69955222 -114333440 - L1MA3 LINE L1 0 6305 6021 441 91 26 9 chr4 69955284 69955366 -114333296 - L1MA3 LINE L1 -206 6094 6021 299 320 20 4 chr4 69955458 69955606 -114333056 + MIR SINE MIR 9 212 -50 21 0 0 0 chr4 69956954 69956975 -114331687 + AT_rich Low_complexity Low_complexity 1 21 0 1959 108 4 0 chr4 69957348 69957606 -114331056 + AluSx SINE Alu 28 286 -26 25 0 0 0 chr4 69958916 69958941 -114329721 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr4 69960333 69960358 -114328304 + AT_rich Low_complexity Low_complexity 1 25 0 1816 148 0 0 chr4 69960359 69960623 -114328039 - AluSq SINE Alu -49 264 1 497 311 79 22 chr4 69961339 69961567 -114327095 + MIR SINE MIR 1 241 -21 250 346 108 43 chr4 69962335 69962520 -114326142 - L2 LINE L2 -678 2636 2440 482 17 0 0 chr4 69962644 69962702 -114325960 + AluY SINE Alu 239 296 -14 21 0 0 0 chr4 69962877 69962898 -114325764 + AT_rich Low_complexity Low_complexity 1 21 0 252 222 161 12 chr4 69962933 69963014 -114325648 + ORSL DNA AcHobo 173 265 -10 25 75 0 0 chr4 69963214 69963267 -114325395 + AT_rich Low_complexity Low_complexity 1 53 0 270 0 0 0 chr4 69963589 69963619 -114325043 + (CA)n Simple_repeat Simple_repeat 2 31 0 357 62 0 0 chr4 69963619 69963667 -114324995 + (TC)n Simple_repeat Simple_repeat 1 48 0 270 298 127 0 chr4 69964667 69964706 -114323956 - L2 LINE L2 0 3313 3280 873 229 26 40 chr4 69964706 69964933 -114323729 - MER58A DNA MER1_type 0 224 1 270 298 127 0 chr4 69964933 69965051 -114323611 - L2 LINE L2 -33 3280 3136 262 276 69 48 chr4 69965155 69965300 -114323362 + L1MC4a LINE L1 5374 5518 -644 1525 158 145 7 chr4 69965301 69965611 -114323051 - THE1A LTR MaLR 0 355 3 11034 107 22 1 chr4 69965613 69967156 -114321506 - THE1A-int LTR MaLR 0 1580 5 1838 146 16 77 chr4 69967160 69967201 -114321461 - THE1A LTR MaLR 0 355 313 2175 121 3 7 chr4 69967201 69967508 -114321154 + AluSx SINE Alu 1 306 -6 1838 146 16 77 chr4 69967508 69967527 -114321135 - THE1A LTR MaLR -42 313 294 3161 87 18 5 chr4 69967527 69967965 -114320697 - MLT2A1 LTR ERVL 0 444 1 1838 146 16 77 chr4 69967965 69968281 -114320381 - THE1A LTR MaLR -61 294 1 385 330 54 56 chr4 69968309 69968682 -114319980 + L1MC4a LINE L1 5568 5939 -1869 258 213 125 25 chr4 69968927 69969087 -114319575 + L1ME2 LINE L1 5150 5325 -821 1880 140 32 46 chr4 69969117 69969488 -114319174 - THE1C LTR MaLR 0 375 10 522 299 154 31 chr4 69969493 69969918 -114318744 + L1ME2 LINE L1 5358 5841 -323 423 242 0 0 chr4 69971065 69971160 -114317502 + MER103 DNA DNA 24 118 -48 705 350 80 19 chr4 69971267 69972032 -114316630 - L2 LINE L2 -1555 1759 895 290 341 117 6 chr4 69973589 69973768 -114314894 + MIR SINE MIR 2 200 -62 1891 99 65 4 chr4 69973900 69974162 -114314500 - AluSg SINE Alu -30 280 3 551 349 90 23 chr4 69974528 69974994 -114313668 + L2 LINE L2 2576 3068 -245 2876 24 0 0 chr4 69975032 69975363 -114313299 - L1PA3 LINE L1 -3 6152 5822 340 24 0 0 chr4 69975364 69975405 -114313257 + L1P LINE L1 4401 4441 -1705 1695 199 0 0 chr4 69975598 69975890 -114312772 - AluJb SINE Alu -16 296 5 381 244 134 56 chr4 69975982 69976232 -114312430 + L1ME LINE L1 5434 5707 -455 368 340 65 92 chr4 69977808 69978190 -114310472 - L2 LINE L2 -4 3268 2897 405 0 0 0 chr4 69978658 69978703 -114309959 + (CA)n Simple_repeat Simple_repeat 2 46 0 226 250 16 0 chr4 69980149 69980213 -114308449 + CT-rich Low_complexity Low_complexity 2 66 0 463 261 265 24 chr4 69984691 69984940 -114303722 - L2 LINE L2 0 3313 3005 36979 51 0 1 chr4 69985000 69989578 -114299084 + L1P LINE L1 14 4590 -1556 5640 36 4 2 chr4 69989678 69990773 -114297889 - L1P2 LINE L1 -363 5792 4694 12842 36 1 2 chr4 69990873 69992471 -114296191 + L1P LINE L1 2759 4354 -1792 2078 52 0 8 chr4 69992571 69992823 -114295839 - AluY SINE Alu -61 250 1 2788 202 16 22 chr4 69992846 69993400 -114295262 - MER68 LTR ERV1 -11 551 1 890 241 30 4 chr4 69993496 69993732 -114294930 + L1MC4a LINE L1 7116 7357 -451 4759 174 8 41 chr4 69993835 69995107 -114293555 + L1PA16 LINE L1 4915 6158 -8 219 392 8 23 chr4 69995146 69995276 -114293386 + MIR SINE MIR 22 149 -113 3381 126 50 2 chr4 69995412 69995914 -114292748 - MER1A DNA MER1_type 0 527 2 451 279 41 20 chr4 69996165 69996312 -114292350 + MIR SINE MIR 104 253 -9 356 275 66 0 chr4 69996316 69996448 -114292214 + MIR SINE MIR 52 191 -63 183 333 71 28 chr4 69996984 69997125 -114291537 - L2 LINE L2 0 3313 3167 1737 151 38 41 chr4 69997289 69997608 -114291054 - THE1B LTR MaLR -46 318 1 518 259 54 18 chr4 69997974 69998198 -114290464 - L1M4 LINE L1 -2368 3778 3547 757 256 157 33 chr4 69998278 69998672 -114289990 - L1MC5 LINE L1 -551 7410 6968 293 318 60 19 chr4 69998879 69999197 -114289465 - L1M4 LINE L1 -1148 4998 4668 495 225 69 110 chr4 70000458 70000676 -114287986 + LTR16A1 LTR ERVL 247 455 -2 27 29 0 0 chr4 70000876 70000910 -114287752 + AT_rich Low_complexity Low_complexity 1 34 0 254 295 16 16 chr4 70000921 70000982 -114287680 + MIR SINE MIR 9 69 -193 215 154 0 39 chr4 70001041 70001093 -114287569 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 199 189 0 0 chr4 70002374 70002411 -114286251 - L2 LINE L2 -317 2955 2919 196 414 75 8 chr4 70004008 70004141 -114284521 + L2 LINE L2 3129 3270 -2 3147 26 5 0 chr4 70004967 70005344 -114283318 + L1PA4 LINE L1 5777 6155 0 3184 286 70 49 chr4 70005351 70006082 -114282580 - L2 LINE L2 -402 2912 2198 747 238 61 0 chr4 70006082 70006246 -114282416 - FAM SINE Alu -1 174 1 3184 286 70 49 chr4 70006246 70007016 -114281646 - L2 LINE L2 -1116 2198 1380 287 273 13 0 chr4 70008241 70008318 -114280344 - L2 LINE L2 -9 3263 3186 254 340 170 16 chr4 70008591 70008785 -114279877 + MIR SINE MIR 18 241 -21 180 0 0 0 chr4 70008953 70008973 -114279689 + (T)n Simple_repeat Simple_repeat 1 20 0 2172 123 3 0 chr4 70009263 70009571 -114279091 + AluSx SINE Alu 1 309 -3 376 306 65 9 chr4 70010446 70010554 -114278108 - L2 LINE L2 0 3313 3200 279 0 0 0 chr4 70011117 70011148 -114277514 + (CA)n Simple_repeat Simple_repeat 2 32 0 488 214 76 41 chr4 70012030 70012175 -114276487 + MLT1D LTR MaLR 3 152 -353 271 103 0 0 chr4 70012149 70012188 -114276474 - 5S rRNA rRNA -82 39 1 * 1024 231 82 51 chr4 70012188 70012578 -114276084 + MLT1D LTR MaLR 104 505 0 22 0 0 0 chr4 70013235 70013257 -114275405 + AT_rich Low_complexity Low_complexity 1 22 0 197 211 18 0 chr4 70013786 70013843 -114274819 + (TA)n Simple_repeat Simple_repeat 1 58 0 24 32 0 0 chr4 70013890 70013921 -114274741 + AT_rich Low_complexity Low_complexity 1 31 0 22 70 0 0 chr4 70014091 70014134 -114274528 + AT_rich Low_complexity Low_complexity 1 43 0 580 277 17 28 chr4 70014573 70014750 -114273912 + MIR SINE MIR 76 250 -12 188 310 35 0 chr4 70014782 70014840 -114273822 - L2 LINE L2 0 3313 3254 1137 224 59 3 chr4 70017094 70017384 -114271278 + L1MC4a LINE L1 6278 6583 -1225 1449 210 67 37 chr4 70017388 70017792 -114270870 - MLT1D LTR MaLR -46 459 44 201 39 0 0 chr4 70017869 70017895 -114270767 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 315 49 0 0 chr4 70017894 70017935 -114270727 + (CA)n Simple_repeat Simple_repeat 1 41 0 238 238 32 0 chr4 70018989 70019052 -114269610 + MER52A LTR ERV1 1 65 -1690 365 319 176 29 chr4 70019080 70019359 -114269303 + L1M2 LINE L1 769 1088 -5761 6938 185 84 59 chr4 70019470 70020998 -114267664 + MER52A LTR ERV1 189 1755 0 1586 92 22 0 chr4 70021652 70021879 -114266783 - L1PA13 LINE L1 -2 6161 5930 2646 99 3 0 chr4 70021882 70022236 -114266426 + THE1A LTR MaLR 1 355 0 10002 110 78 3 chr4 70022236 70023704 -114264958 + THE1A-int LTR MaLR 1 1579 -1 2669 88 11 0 chr4 70023704 70024055 -114264607 + THE1A LTR MaLR 1 355 0 2788 115 65 18 chr4 70024055 70024499 -114264163 + MER52C LTR ERV1 814 1278 0 34 0 0 0 chr4 70024833 70024867 -114263795 + AT_rich Low_complexity Low_complexity 1 34 0 4154 77 23 0 chr4 70024893 70025452 -114263210 - L1PA8 LINE L1 -15 6157 5586 239 385 78 18 chr4 70025744 70025910 -114262752 + MIR3 SINE MIR 16 191 -17 318 310 97 0 chr4 70026320 70026433 -114262229 - MER5A DNA MER1_type -6 183 60 220 287 35 35 chr4 70027362 70027449 -114261213 + MIR SINE MIR 165 251 -11 24 0 0 0 chr4 70027770 70027794 -114260868 + AT_rich Low_complexity Low_complexity 1 24 0 225 0 0 0 chr4 70027887 70027912 -114260750 + (CA)n Simple_repeat Simple_repeat 1 25 0 185 226 81 65 chr4 70028148 70028210 -114260452 - MIR SINE MIR -21 241 179 * 191 322 91 33 chr4 70028193 70028314 -114260348 + MIR SINE MIR 114 241 -21 190 291 63 13 chr4 70029777 70029856 -114258806 - L3 LINE CR1 -1 1576 1494 212 299 259 28 chr4 70030168 70030419 -114258243 - L3 LINE CR1 -289 1288 980 263 317 41 62 chr4 70030679 70030824 -114257838 - MER5A DNA MER1_type -2 187 46 7261 223 29 5 chr4 70031372 70033128 -114255534 - L1 LINE L1 -780 5366 3570 2077 101 15 30 chr4 70033124 70033452 -114255210 + L1P4 LINE L1 5456 5778 -388 * 4985 37 3 11 chr4 70033877 70034496 -114254166 - L1PA4 LINE L1 0 6155 5542 202 271 35 59 chr4 70034497 70034582 -114254080 + MIR3 SINE MIR 121 203 -5 227 373 0 0 chr4 70034636 70034695 -114253967 - MIR SINE MIR -151 111 53 207 311 91 30 chr4 70035715 70035847 -114252815 - MIR SINE MIR -56 206 67 406 335 52 0 chr4 70036054 70036209 -114252453 + MIR SINE MIR 100 262 0 490 308 81 20 chr4 70037663 70037910 -114250752 + MLT1K LTR MaLR 319 580 -8 242 325 58 64 chr4 70038424 70038612 -114250050 - MIR SINE MIR -56 206 20 28 29 0 0 chr4 70038942 70038977 -114249685 + AT_rich Low_complexity Low_complexity 1 35 0 192 40 0 0 chr4 70039359 70039384 -114249278 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 941 251 97 93 chr4 70039769 70040272 -114248390 - MLT1D LTR MaLR 0 505 1 5338 82 14 18 chr4 70040586 70040773 -114247889 - MER4E LTR ERV1 -10 756 570 2231 102 10 0 chr4 70040773 70041078 -114247584 + AluSp SINE Alu 1 308 -5 5338 82 14 18 chr4 70041078 70041658 -114247004 - MER4E LTR ERV1 -196 570 1 1895 132 50 9 chr4 70043072 70043414 -114245248 + L1PA16 LINE L1 5807 6162 -4 201 74 0 0 chr4 70044100 70044127 -114244535 + (GAAA)n Simple_repeat Simple_repeat 1 27 0 207 0 0 0 chr4 70044612 70044635 -114244027 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2638 97 31 14 chr4 70044637 70045059 -114243603 - L1MA1 LINE L1 -5 6297 5869 16570 155 53 35 chr4 70045059 70048408 -114240254 - L1M1 LINE L1 -4142 3423 13 1295 176 0 28 chr4 70048451 70048524 -114240138 - MER67C LTR ERV1 0 710 636 7466 31 6 1 chr4 70048524 70049569 -114239093 + L1PA4 LINE L1 5106 6154 -1 1295 176 0 28 chr4 70049569 70049779 -114238883 - MER67C LTR ERV1 -74 636 435 1154 123 71 5 chr4 70049779 70049990 -114238672 - MER6 DNA MER2_type 0 865 641 572 266 34 45 chr4 70051144 70051249 -114237413 + MER5B DNA MER1_type 4 108 -70 2161 153 127 0 chr4 70051249 70051627 -114237035 - MSTB LTR MaLR 0 426 1 572 266 34 45 chr4 70051627 70051698 -114236964 + MER5B DNA MER1_type 108 178 0 2237 137 94 5 chr4 70051892 70052285 -114236377 + MSTA LTR MaLR 1 428 0 189 0 0 0 chr4 70052754 70052775 -114235887 + (CACCC)n Simple_repeat Simple_repeat 5 25 0 1897 113 90 8 chr4 70054605 70054972 -114233690 - LTR7 LTR ERV1 0 450 1 749 94 17 0 chr4 70055596 70055713 -114232949 - MER4E LTR ERV1 -647 119 1 273 299 132 0 chr4 70055720 70055864 -114232798 + MIR SINE MIR 93 255 -7 25 31 0 0 chr4 70056792 70056824 -114231838 + AT_rich Low_complexity Low_complexity 1 32 0 2205 220 5 17 chr4 70057691 70058283 -114230379 + L1 LINE L1 3204 3788 -2358 21914 54 2 3 chr4 70058294 70061173 -114227489 + L1PA3 LINE L1 8 2884 -3262 7415 36 3 0 chr4 70061273 70062593 -114226069 + L1PA3 LINE L1 4828 6155 0 2092 210 18 2 chr4 70062593 70063089 -114225573 + L1 LINE L1 3777 4280 -1866 787 262 15 15 chr4 70063191 70063393 -114225269 - MLT1D-int LTR MaLR -508 863 662 1655 248 57 50 chr4 70063422 70064075 -114224587 - MLT1D-int LTR MaLR -709 662 6 1909 228 15 55 chr4 70064080 70064606 -114224056 - MLT1D LTR MaLR 0 505 1 478 257 35 80 chr4 70064713 70064929 -114223733 + MLT1J LTR MaLR 31 215 -235 746 257 40 10 chr4 70065007 70065209 -114223453 - MER58A DNA MER1_type -16 208 1 355 325 83 53 chr4 70065637 70065859 -114222803 + L1ME4a LINE L1 5431 5668 -2140 8479 50 22 2 chr4 70065859 70066909 -114221753 + MER11C LTR ERVK 1 1071 0 355 325 83 53 chr4 70066909 70067025 -114221637 + L1ME4a LINE L1 5668 5779 -2029 426 39 0 0 chr4 70067206 70067258 -114221404 + (TTTTA)n Simple_repeat Simple_repeat 5 56 0 35 63 0 0 chr4 70067297 70067360 -114221302 + AT_rich Low_complexity Low_complexity 1 63 0 662 328 105 19 chr4 70067390 70067921 -114220741 - L2 LINE L2 -14 3258 2670 21 36 0 0 chr4 70068168 70068196 -114220466 + AT_rich Low_complexity Low_complexity 1 28 0 287 183 58 29 chr4 70068351 70068455 -114220207 + L1ME4a LINE L1 6012 6118 -3 397 315 98 22 chr4 70068543 70068727 -114219935 + MIR SINE MIR 32 229 -33 437 258 66 14 chr4 70068840 70069004 -114219658 - MIR SINE MIR -63 145 24 188 285 113 54 chr4 70069164 70069350 -114219312 - L2 LINE L2 -3 3310 3114 1918 125 19 50 chr4 70070126 70070264 -114218398 + AluSx SINE Alu 1 142 -170 2501 63 0 3 chr4 70070264 70070565 -114218097 + AluY SINE Alu 1 300 -11 1918 125 19 50 chr4 70070565 70070746 -114217916 + AluSx SINE Alu 142 310 -2 1751 193 91 30 chr4 70070799 70071229 -114217433 - MSTB2 LTR MaLR -1 456 1 475 237 54 38 chr4 70073974 70074160 -114214502 + MLT1J LTR MaLR 348 532 -17 334 246 12 0 chr4 70074909 70075076 -114213586 + (TA)n Simple_repeat Simple_repeat 2 170 0 21 71 0 0 chr4 70075132 70075174 -114213488 + AT_rich Low_complexity Low_complexity 1 42 0 519 341 114 62 chr4 70075174 70075707 -114212955 - L2 LINE L2 -524 2790 2230 233 207 0 52 chr4 70075709 70075767 -114212895 - LTR16C LTR ERVL -2 489 435 245 287 174 0 chr4 70075781 70075896 -114212766 + MLT1G1 LTR MaLR 1 135 -432 268 322 0 0 chr4 70075923 70076013 -114212649 + MLT1G1 LTR MaLR 185 274 -281 525 272 17 46 chr4 70076098 70076271 -114212391 + MLT1G1 LTR MaLR 426 593 -2 473 339 117 4 chr4 70076336 70076575 -114212087 - LTR16C LTR ERVL -225 266 1 1593 223 73 49 chr4 70076579 70077032 -114211630 + MLT2B1 LTR ERVL 1 464 -56 234 346 106 71 chr4 70077045 70077441 -114211221 + L2 LINE L2 2846 3255 -17 186 43 0 0 chr4 70077442 70077465 -114211197 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 1418 187 0 4 chr4 70077682 70077944 -114210718 + L1P3 LINE L1 10 270 -6191 23360 65 5 2 chr4 70077944 70081981 -114206681 + L1PA6 LINE L1 2109 6150 -4 522 345 69 8 chr4 70082383 70082629 -114206033 - MIR SINE MIR 0 262 2 21 0 0 0 chr4 70082984 70083005 -114205657 + AT_rich Low_complexity Low_complexity 1 21 0 333 327 149 33 chr4 70083416 70083811 -114204851 + HAL1 LINE L1 411 851 -1656 1381 160 72 97 chr4 70083851 70084170 -114204492 - AluJb SINE Alu -1 311 1 1217 113 28 68 chr4 70084172 70084420 -114204242 + L1MA3 LINE L1 6068 6305 0 1722 272 102 30 chr4 70084906 70085937 -114202725 + HAL1 LINE L1 1295 2399 -108 2084 137 3 0 chr4 70085962 70086262 -114202400 - AluSx SINE Alu -11 301 1 5860 108 21 7 chr4 70086369 70088246 -114200416 + L1PA13 LINE L1 4288 6163 0 1693 115 3 3 chr4 70088306 70088601 -114200061 - MER61-int LTR ERV1 -3044 2173 1879 2181 16 0 0 chr4 70088639 70088887 -114199775 - L1PA2 LINE L1 -4 6151 5904 1590 184 195 89 chr4 70088928 70089661 -114199001 + LTR1B LTR ERV1 1 811 -15 8253 53 2 1 chr4 70090053 70091018 -114197644 + LTR5 LTR ERVK 1 966 -3 251 317 174 6 chr4 70091027 70091194 -114197468 + L2 LINE L2 3023 3217 -96 2330 88 0 3 chr4 70291885 70292180 -113996482 - AluSg SINE Alu -16 294 1 290 170 90 120 chr4 70292567 70292667 -113995995 + MIR SINE MIR 36 132 -76 216 264 48 72 chr4 70292807 70292932 -113995730 - L2 LINE L2 -254 3018 2897 596 112 86 9 chr4 70293051 70293167 -113995495 - L1MB2 LINE L1 -106 6065 5941 341 283 11 33 chr4 70293256 70293348 -113995314 - L2 LINE L2 -14 3258 3169 6117 98 6 0 chr4 70293349 70294566 -113994096 - L1PA11 LINE L1 -1 6173 4933 1338 129 77 20 chr4 70294766 70295014 -113993648 + MLT1B-int LTR MaLR 1469 1730 -5 1130 199 54 22 chr4 70295020 70295297 -113993365 + MLT1B LTR MaLR 1 286 -104 2691 149 9 4 chr4 70295380 70295835 -113992827 + MER41E LTR ERV1 1 457 -55 575 207 8 8 chr4 70295828 70295949 -113992713 + MLT1B LTR MaLR 270 390 0 * 246 313 53 0 chr4 70295949 70296067 -113992595 - MIR SINE MIR -80 128 2 297 0 0 0 chr4 70296484 70296517 -113992145 + (CA)n Simple_repeat Simple_repeat 1 33 0 438 352 113 15 chr4 70296530 70296857 -113991805 + L3 LINE CR1 1192 1550 -27 341 109 0 0 chr4 70296935 70296990 -113991672 + L1PA4 LINE L1 6098 6152 -3 1360 280 64 50 chr4 70298112 70299049 -113989613 - L1ME3A LINE L1 -11 6159 5255 427 229 25 45 chr4 70299483 70299684 -113988978 - L1ME3A LINE L1 -1459 4687 4491 367 290 23 36 chr4 70299864 70300012 -113988650 + MIR SINE MIR 14 151 -66 187 212 0 0 chr4 70300039 70300072 -113988590 + L2 LINE L2 3222 3254 -18 397 245 90 57 chr4 70300485 70300697 -113987965 + L2 LINE L2 3095 3313 0 2765 42 0 0 chr4 70301014 70301346 -113987316 + L1PA7 LINE L1 5819 6150 -4 1374 227 5 49 chr4 70301756 70301942 -113986720 + MLT1A2 LTR MaLR 1 163 -211 180 0 0 0 chr4 70301942 70301962 -113986700 + (TC)n Simple_repeat Simple_repeat 1 20 0 1374 227 5 49 chr4 70301962 70302162 -113986500 + MLT1A2 LTR MaLR 163 370 -4 29 0 0 0 chr4 70302320 70302349 -113986313 + AT_rich Low_complexity Low_complexity 1 29 0 1995 143 20 0 chr4 70302360 70302654 -113986008 + AluSx SINE Alu 1 300 -12 520 260 164 26 chr4 70302777 70303001 -113985661 + MIR SINE MIR 20 261 -1 263 246 33 0 chr4 70303050 70303111 -113985551 + L2 LINE L2 3210 3272 0 1545 195 23 12 chr4 70303175 70303519 -113985143 - MER90 LTR ERV1 -2 612 265 315 321 20 68 chr4 70303561 70303810 -113984852 - LTR16B LTR ERVL -2 462 226 285 277 0 32 chr4 70304288 70304382 -113984280 - MIR SINE MIR -116 146 56 2299 79 0 10 chr4 70304847 70305138 -113983524 - AluSc SINE Alu -19 290 3 295 315 28 37 chr4 70305624 70305732 -113982930 + L2 LINE L2 3122 3228 -44 2126 103 10 10 chr4 70306026 70306326 -113982336 - AluSc SINE Alu -9 300 1 315 0 0 0 chr4 70306890 70306925 -113981737 + (CA)n Simple_repeat Simple_repeat 1 35 0 1229 189 74 62 chr4 70307197 70307615 -113981047 - Zaphod DNA AcHobo -10 4021 3599 392 119 35 78 chr4 70307628 70307722 -113980940 - LTR45 LTR ERV1 0 525 398 17242 102 8 4 chr4 70307723 70310391 -113978271 + L1PA7 LINE L1 1581 4259 -1887 6825 64 8 0 chr4 70310391 70311955 -113976707 + L1PA7 LINE L1 4583 6153 -1 262 233 95 17 chr4 70312063 70312179 -113976483 - LTR45B LTR ERV1 -69 420 296 429 264 27 0 chr4 70312560 70312670 -113975992 - MLT1K LTR MaLR -305 283 171 236 214 0 36 chr4 70312722 70312778 -113975884 + CT-rich Low_complexity Low_complexity 4 57 0 9102 141 12 13 chr4 70313393 70313748 -113974914 - L1P LINE L1 -1478 4668 4314 2254 112 3 0 chr4 70313748 70314052 -113974610 + AluSx SINE Alu 6 310 -2 9102 141 12 13 chr4 70314052 70315344 -113973318 - L1P LINE L1 -1832 4314 3022 699 152 26 46 chr4 70315412 70315563 -113973099 - L1MD3 LINE L1 0 7995 7848 540 180 60 73 chr4 70315602 70315752 -113972910 + MIR SINE MIR 88 235 -27 271 176 0 0 chr4 70316833 70316884 -113971778 - L2 LINE L2 0 3313 3263 249 312 128 8 chr4 70317459 70317584 -113971078 + MIR SINE MIR 2 141 -121 484 122 271 0 chr4 70318883 70318990 -113969672 - L2 LINE L2 0 3313 3178 346 306 50 33 chr4 70319205 70319385 -113969277 - MIR SINE MIR 0 262 80 22 21 0 62 chr4 70319542 70319590 -113969072 + AT_rich Low_complexity Low_complexity 1 45 0 578 275 109 18 chr4 70320062 70320291 -113968371 - MIR SINE MIR -1 261 12 1606 151 8 0 chr4 70320910 70321162 -113967500 + AluSx SINE Alu 59 312 0 21 0 0 0 chr4 70321330 70321351 -113967311 + AT_rich Low_complexity Low_complexity 1 21 0 418 299 65 7 chr4 70321588 70321742 -113966920 - MIR3 SINE MIR -15 193 31 354 23 0 0 chr4 70321762 70321805 -113966857 + (CA)n Simple_repeat Simple_repeat 1 43 0 309 320 83 87 chr4 70323666 70324185 -113964477 + L1M2 LINE L1 487 1003 -5846 956 182 0 45 chr4 70324808 70325039 -113963623 + AluJb SINE Alu 98 319 0 223 91 0 0 chr4 70325006 70325075 -113963587 + (CAA)n Simple_repeat Simple_repeat 1 69 0 * 243 254 0 0 chr4 70326242 70326297 -113962365 + CT-rich Low_complexity Low_complexity 4 58 0 221 136 0 23 chr4 70326298 70326342 -113962320 + (TTC)n Simple_repeat Simple_repeat 3 45 0 2089 103 16 22 chr4 70327266 70327577 -113961085 - AluSq SINE Alu -4 309 1 277 246 89 6 chr4 70327953 70328057 -113960605 + MIR3 SINE MIR 65 175 -33 225 119 0 0 chr4 70328122 70328164 -113960498 + (TAG)n Simple_repeat Simple_repeat 1 42 0 588 189 57 9 chr4 70328164 70328270 -113960392 - FLAM_C SINE Alu -28 115 5 186 240 40 53 chr4 70328414 70328489 -113960173 + L2 LINE L2 1013 1086 -2228 264 30 0 0 chr4 70328685 70328718 -113959944 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2048 126 0 0 chr4 70328725 70329002 -113959660 - AluSx SINE Alu -35 277 1 212 342 99 0 chr4 70329935 70330046 -113958616 - MIR SINE MIR -98 164 43 1293 191 48 82 chr4 70330049 70330425 -113958237 - MLT1A2 LTR MaLR -11 363 1 2127 225 26 5 chr4 70330478 70331043 -113957619 - L1MC3 LINE L1 -8 7777 7201 372 222 33 0 chr4 70331058 70331148 -113957514 - MLT1F1 LTR MaLR -442 125 33 369 158 87 0 chr4 70331148 70331275 -113957387 - L1MC3 LINE L1 -690 7095 6958 5766 126 22 1 chr4 70331424 70332487 -113956175 + L1PA15 LINE L1 5065 6158 -7 725 256 178 22 chr4 70332521 70332880 -113955782 - MLT1J1 LTR MaLR -31 415 1 267 200 0 0 chr4 70333168 70333223 -113955439 + HsTC2 DNA Tc2 14 68 -1830 597 268 120 29 chr4 70333277 70333661 -113955001 + HsTC2 DNA Tc2 1306 1900 0 239 371 9 9 chr4 70334490 70334595 -113954067 - MIR SINE MIR -66 142 38 617 279 67 14 chr4 70335842 70336050 -113952612 + MIR SINE MIR 43 261 -1 181 347 0 0 chr4 70336401 70336450 -113952212 - L2 LINE L2 -10 3262 3214 779 229 47 16 chr4 70336650 70336842 -113951820 - MIR SINE MIR -1 261 64 651 277 81 94 chr4 70337926 70338298 -113950364 + L3 LINE CR1 1200 1566 -11 806 177 0 0 chr4 70338418 70338559 -113950103 + L1PB4 LINE L1 6009 6149 -7 24 0 0 0 chr4 70338573 70338597 -113950065 + AT_rich Low_complexity Low_complexity 1 24 0 8498 38 5 1 chr4 70338808 70339908 -113948754 + L1P LINE L1 4300 5403 -743 22 35 0 0 chr4 70340797 70340826 -113947836 + AT_rich Low_complexity Low_complexity 1 29 0 237 340 117 19 chr4 70341147 70341250 -113947412 + L2 LINE L2 2552 2664 -650 * 603 250 7 14 chr4 70341241 70341385 -113947277 + MIR SINE MIR 110 252 -10 956 301 87 43 chr4 70341450 70342033 -113946629 + L2 LINE L2 2533 3089 -224 450 0 0 0 chr4 70342033 70342083 -113946579 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 4062 13 0 0 chr4 70342083 70342539 -113946123 - L1PA2 LINE L1 -13 6142 5687 956 301 87 43 chr4 70342539 70342689 -113945973 + L2 LINE L2 3088 3300 -13 243 304 107 124 chr4 70342801 70343250 -113945412 + L2 LINE L2 2808 3264 -8 235 326 112 10 chr4 70344439 70344537 -113944125 - L2 LINE L2 -28 3244 3137 400 83 17 0 chr4 70345106 70345166 -113943496 - L1PA16 LINE L1 -11 6155 6095 1066 238 40 55 chr4 70345249 70345671 -113942991 + MLT2B1 LTR ERVL 1 464 -56 333 0 0 0 chr4 70345689 70345726 -113942936 + (CA)n Simple_repeat Simple_repeat 2 38 0 580 255 6 12 chr4 70345729 70345890 -113942772 - Tigger1 DNA MER2_type -1 2417 2258 195 42 0 0 chr4 70345904 70345928 -113942734 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 5043 66 1 0 chr4 70345928 70346599 -113942063 - L1PA8 LINE L1 -24 6148 5477 12444 138 40 11 chr4 70346599 70347375 -113941287 - Tigger1 DNA MER2_type -165 2253 1501 2112 107 13 13 chr4 70347375 70347699 -113940963 - AluSg SINE Alu 0 310 6 12444 138 40 11 chr4 70347699 70349111 -113939551 - Tigger1 DNA MER2_type -917 1501 2 669 140 9 0 chr4 70349142 70349249 -113939413 - Tigger1 DNA MER2_type -993 1425 1318 283 121 0 52 chr4 70349250 70349308 -113939354 + MLT2B1 LTR ERVL 466 520 0 277 304 81 57 chr4 70350110 70350224 -113938438 - L2 LINE L2 0 3313 3203 3452 89 11 0 chr4 70350224 70350672 -113937990 + MLT2A2 LTR ERVL 1 453 0 277 304 81 57 chr4 70350672 70350840 -113937822 - L2 LINE L2 -110 3203 3024 1434 287 63 11 chr4 70351451 70351928 -113936734 - L2 LINE L2 -339 2975 2474 440 246 46 86 chr4 70351943 70352118 -113936544 + MER69A DNA AcHobo 2 169 -8 1617 166 65 6 chr4 70353207 70353544 -113935118 - MLT1A1 LTR MaLR -8 357 1 586 294 22 27 chr4 70354237 70354421 -113934241 - MER5A DNA MER1_type -1 188 6 201 189 113 0 chr4 70356026 70356079 -113932583 + MER91C DNA MER1_type 20 78 -62 3419 76 16 2 chr4 70356144 70356591 -113932071 - MLT2A2 LTR ERVL 0 453 1 293 206 7 121 chr4 70357220 70357324 -113931338 - MIR SINE MIR -83 125 28 249 352 101 60 chr4 70357552 70357989 -113930673 + L2 LINE L2 2809 3263 -9 3327 125 21 35 chr4 70358032 70358567 -113930095 + MER1A DNA MER1_type 1 527 0 1746 160 10 24 chr4 70358577 70358914 -113929748 - AluJb SINE Alu 0 333 1 387 288 44 52 chr4 70359219 70359490 -113929172 - HAL1 LINE L1 -1709 798 530 244 333 21 21 chr4 70359561 70359705 -113928957 - HAL1 LINE L1 -2108 399 256 25 0 0 0 chr4 70359783 70359808 -113928854 + AT_rich Low_complexity Low_complexity 1 25 0 1558 157 27 56 chr4 70359908 70360245 -113928417 + MER7A DNA MER2_type 2 326 -20 282 315 71 8 chr4 70360326 70360453 -113928209 - HAL1 LINE L1 -2372 135 1 1205 262 57 46 chr4 70360476 70361111 -113927551 + L2 LINE L2 2657 3313 0 4947 174 26 6 chr4 70361821 70362778 -113925884 + Tigger1 DNA MER2_type 1 976 -1442 5699 124 11 3 chr4 70362790 70363894 -113924768 - L1PA13 LINE L1 0 6163 5051 2385 174 4 14 chr4 70363899 70364115 -113924547 - L1P LINE L1 -894 5252 5035 1995 71 0 0 chr4 70364115 70364390 -113924272 - AluY SINE Alu 0 316 42 2385 174 4 14 chr4 70364390 70364661 -113924001 - L1P LINE L1 -1111 5035 4769 8693 133 6 24 chr4 70364661 70366147 -113922515 + Tigger1 DNA MER2_type 960 2418 0 289 208 83 0 chr4 70366478 70366550 -113922112 + MIR SINE MIR 120 197 -65 21 0 0 0 chr4 70367069 70367090 -113921572 + AT_rich Low_complexity Low_complexity 1 21 0 327 178 68 0 chr4 70367135 70367208 -113921454 + MER53 DNA DNA 1 78 -111 593 334 78 8 chr4 70368000 70368359 -113920303 - L2 LINE L2 -5 3308 2925 255 145 145 48 chr4 70368637 70368720 -113919942 + MLT1I LTR MaLR 273 363 -46 604 325 113 39 chr4 70368773 70369234 -113919428 - L2 LINE L2 -388 2926 2432 192 296 0 19 chr4 70369681 70369735 -113918927 - MIR SINE MIR -179 83 31 244 279 0 0 chr4 70369972 70370040 -113918622 - L2 LINE L2 0 3272 3205 1188 223 58 42 chr4 70370384 70370766 -113917896 - MLT1C LTR MaLR -28 439 52 2169 149 22 17 chr4 70371028 70371390 -113917272 + THE1B LTR MaLR 1 364 0 290 247 11 22 chr4 70371886 70371975 -113916687 - MER58 DNA MER1_type -15 2405 2318 301 260 10 60 chr4 70371991 70372091 -113916571 - MER58 DNA MER1_type -2325 95 1 2209 129 0 0 chr4 70372215 70372524 -113916138 - AluSx SINE Alu -3 309 1 349 382 15 8 chr4 70372533 70372664 -113915998 - MIR3 SINE MIR -47 161 30 246 284 27 0 chr4 70372969 70373043 -113915619 - MIR SINE MIR 0 262 187 27358 128 18 53 chr4 70373727 70380129 -113908533 + L1PA8 LINE L1 12 6172 0 323 279 64 29 chr4 70380347 70380519 -113908143 + MER5B DNA MER1_type 1 178 0 820 235 175 3 chr4 70380589 70380654 -113908008 - MER46C DNA MER2_type -4 334 282 324 0 0 0 chr4 70380654 70380690 -113907972 + (TG)n Simple_repeat Simple_repeat 1 36 0 820 235 175 3 chr4 70380690 70380909 -113907753 - MER46C DNA MER2_type -56 282 1 203 317 12 98 chr4 70380952 70381034 -113907628 - L2 LINE L2 -84 3188 3114 367 252 48 19 chr4 70381065 70381168 -113907494 + MER5B DNA MER1_type 2 107 -71 1957 116 0 56 chr4 70381212 70381515 -113907147 + AluSg SINE Alu 1 286 -24 207 0 0 0 chr4 70381518 70381541 -113907121 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 326 149 0 92 chr4 70382958 70383045 -113905617 - MLT2F LTR ERVL -584 79 1 28 0 0 0 chr4 70383050 70383078 -113905584 + AT_rich Low_complexity Low_complexity 1 28 0 400 281 123 20 chr4 70383980 70384126 -113904536 - MIR SINE MIR -12 250 90 321 325 17 8 chr4 70384222 70384339 -113904323 - MIR SINE MIR 0 262 145 27 81 0 0 chr4 70384888 70384950 -113903712 + AT_rich Low_complexity Low_complexity 1 62 0 1006 146 25 19 chr4 70385636 70385794 -113902868 - FRAM SINE Alu -15 161 3 257 264 264 8 chr4 70386065 70386186 -113902476 + MIR SINE MIR 7 158 -104 388 290 49 38 chr4 70386211 70386394 -113902268 - L2 LINE L2 -25 3288 3104 937 178 130 0 chr4 70386404 70386589 -113902073 - MER3 DNA MER1_type 0 209 1 605 219 154 11 chr4 70388678 70388938 -113899724 - L1ME4a LINE L1 -237 5884 5588 21 36 0 0 chr4 70389231 70389259 -113899403 + AT_rich Low_complexity Low_complexity 1 28 0 657 251 141 133 chr4 70390246 70390848 -113897814 + L3 LINE CR1 967 1573 -4 4931 123 24 2 chr4 70390906 70391695 -113896967 - L1PA16 LINE L1 -2 6164 5359 1984 145 28 0 chr4 70391906 70392195 -113896467 - AluSq SINE Alu -16 297 1 204 122 0 0 chr4 70392541 70392582 -113896080 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 275 305 22 86 chr4 70392643 70392912 -113895750 + L2 LINE L2 2273 2524 -790 1059 159 0 80 chr4 70392947 70393186 -113895476 - MLT1B LTR MaLR -170 220 1 278 410 26 0 chr4 70394131 70394248 -113894414 - MIR SINE MIR -136 126 7 204 125 0 0 chr4 70394582 70394614 -113894048 + (TA)n Simple_repeat Simple_repeat 2 33 0 226 321 73 37 chr4 70394847 70394956 -113893706 - L2 LINE L2 -639 2675 2563 697 101 43 7 chr4 70395054 70395192 -113893470 + GA-rich Low_complexity Low_complexity 3 145 0 547 356 131 35 chr4 70395193 70395969 -113892693 - L2 LINE L2 -907 2407 1557 279 292 83 0 chr4 70396475 70396619 -113892043 + MLT1L LTR MaLR 316 471 -144 1616 193 51 3 chr4 70396628 70396980 -113891682 + MLT1C LTR MaLR 1 369 -98 527 186 29 0 chr4 70397021 70397123 -113891539 + MLT1C LTR MaLR 355 459 -8 184 337 183 43 chr4 70397291 70397849 -113890813 - L2 LINE L2 -2303 1011 376 217 288 34 0 chr4 70397936 70397995 -113890667 - L3 LINE CR1 -12 1565 1505 22 0 0 0 chr4 70398818 70398840 -113889822 + AT_rich Low_complexity Low_complexity 1 22 0 2136 150 87 25 chr4 70399425 70399864 -113888798 - MER31B LTR ERV1 0 466 1 349 339 31 15 chr4 70400622 70400752 -113887910 + MIR3 SINE MIR 13 144 -64 4016 175 42 26 chr4 70401142 70401984 -113886678 + L1PB4 LINE L1 4472 5299 -857 1678 169 6 65 chr4 70401984 70402309 -113886353 + AluJo SINE Alu 1 306 -6 4016 175 42 26 chr4 70402309 70403094 -113885568 + L1PB4 LINE L1 5299 6142 -14 2298 69 0 3 chr4 70405687 70406013 -113882649 - AluY SINE Alu 0 311 1 207 0 0 0 chr4 70406406 70406429 -113882233 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1545 230 97 7 chr4 70407078 70407522 -113881140 - MER110 LTR ERV1 -7 484 1 216 296 157 17 chr4 70407893 70408008 -113880654 + L2 LINE L2 2965 3095 -177 462 305 30 8 chr4 70408804 70408935 -113879727 + L2 LINE L2 3139 3272 0 1322 217 19 73 chr4 70410595 70411083 -113877579 - MER89 LTR ERV1 0 559 1 13138 241 45 41 chr4 70411083 70414712 -113873950 - MER89-int LTR ERV1 0 6801 3188 1744 183 0 7 chr4 70414712 70415020 -113873642 - AluJo SINE Alu 0 307 2 13138 241 45 41 chr4 70415020 70415051 -113873611 - MER89-int LTR ERV1 -3613 3188 3159 1501 216 61 54 chr4 70415051 70415513 -113873149 + MLT1C LTR MaLR 1 465 -2 13138 241 45 41 chr4 70415513 70415786 -113872876 - MER89-int LTR ERV1 -3642 3159 2850 1124 287 76 68 chr4 70416003 70416117 -113872545 - MER89-int LTR ERV1 -6076 725 613 2374 207 21 33 chr4 70416117 70416638 -113872024 - MLT2B2 LTR ERVL 0 515 1 1124 287 76 68 chr4 70416638 70417209 -113871453 - MER89-int LTR ERV1 -6188 613 35 1421 243 11 11 chr4 70417241 70417599 -113871063 - MER89 LTR ERV1 -5 554 197 389 225 0 0 chr4 70417572 70417661 -113871001 - MER89 LTR ERV1 -470 89 1 * 22 35 0 0 chr4 70418128 70418157 -113870505 + AT_rich Low_complexity Low_complexity 1 29 0 183 254 73 18 chr4 70418510 70418565 -113870097 + L3 LINE CR1 1515 1572 -5 216 268 0 0 chr4 70418586 70418642 -113870020 - MIR SINE MIR -24 238 183 267 351 110 0 chr4 70418650 70418804 -113869858 - MIR SINE MIR 0 262 92 416 268 114 15 chr4 70419326 70419363 -113869299 + MIR SINE MIR 4 36 -181 2222 115 126 5 chr4 70419363 70419745 -113868917 - MSTA LTR MaLR 0 428 1 416 268 114 15 chr4 70419745 70419845 -113868817 + MIR SINE MIR 36 152 -65 189 302 38 0 chr4 70420320 70420373 -113868289 - MIR3 SINE MIR -52 156 102 263 286 16 0 chr4 70420587 70420650 -113868012 + polypurine Low_complexity Low_complexity 3 66 0 387 320 77 105 chr4 70421068 70421421 -113867241 + L2 LINE L2 2930 3272 0 367 296 64 47 chr4 70421490 70421662 -113867000 - MLT1J2 LTR MaLR 0 450 276 28 0 0 0 chr4 70422298 70422326 -113866336 + AT_rich Low_complexity Low_complexity 1 28 0 238 246 16 0 chr4 70423469 70423530 -113865132 + LTR67 LTR ERVL 494 555 -2 29 70 0 0 chr4 70424154 70424211 -113864451 + AT_rich Low_complexity Low_complexity 1 57 0 28484 112 18 64 chr4 70424355 70430808 -113857854 - L1PA7 LINE L1 -3 6151 4 2401 93 0 0 chr4 70431226 70431527 -113857135 - AluSx SINE Alu -11 301 1 1335 173 21 21 chr4 70432434 70432671 -113855991 + AluJb SINE Alu 53 289 -23 662 196 68 78 chr4 70432678 70432959 -113855703 - LTR37A LTR ERV1 -58 368 91 524 326 55 17 chr4 70433222 70433458 -113855204 + L2 LINE L2 2387 2631 -683 208 259 0 0 chr4 70434316 70434370 -113854292 + A-rich Low_complexity Low_complexity 1 54 0 392 311 35 48 chr4 70434376 70434752 -113853910 + L1MEd LINE L1 2 409 -5710 253 293 53 0 chr4 70434843 70434918 -113853744 + L1MEd LINE L1 475 553 -5566 1083 232 142 9 chr4 70434984 70435316 -113853346 + Cheshire DNA MER1_type 1 376 -2044 699 243 46 7 chr4 70435316 70435662 -113853000 - MSTD LTR MaLR 0 396 1 2614 229 38 45 chr4 70435677 70436547 -113852115 + Cheshire DNA MER1_type 390 1253 -1167 2191 203 103 6 chr4 70437004 70437545 -113851117 + Charlie1a DNA MER1_type 1 594 -861 1718 147 59 39 chr4 70437549 70437855 -113850807 + AluJo SINE Alu 1 312 0 684 98 0 0 chr4 70437858 70437960 -113850702 + (GGAA)n Simple_repeat Simple_repeat 3 104 0 1911 205 29 2 chr4 70437962 70438405 -113850257 + Charlie1a DNA MER1_type 588 1042 -413 322 180 0 0 chr4 70438442 70438503 -113850159 + Charlie1a DNA MER1_type 1394 1454 -1 38 22 0 0 chr4 70438617 70438662 -113850000 + AT_rich Low_complexity Low_complexity 1 45 0 1873 97 0 30 chr4 70438662 70438930 -113849732 - AluY SINE Alu -5 306 47 1620 204 4 0 chr4 70438930 70439208 -113849454 - AluJo SINE Alu -31 281 1 643 269 48 21 chr4 70439259 70439445 -113849217 - MIR SINE MIR 0 262 72 820 176 104 49 chr4 70439562 70439869 -113848793 + MER33 DNA MER1_type 1 324 0 3662 118 6 62 chr4 70439969 70440613 -113848049 - MER4B LTR ERV1 0 610 3 2145 146 0 3 chr4 70441147 70441455 -113847207 - AluSq SINE Alu -6 307 1 24 0 0 0 chr4 70441659 70441683 -113846979 + AT_rich Low_complexity Low_complexity 1 24 0 184 214 0 0 chr4 70442005 70442047 -113846615 + MIR SINE MIR 119 160 -102 2623 170 37 17 chr4 70442048 70442584 -113846078 - MER34C LTR ERV1 -4 581 35 428 238 115 8 chr4 70442854 70442976 -113845686 + MLT1I LTR MaLR 72 206 -203 1236 178 76 4 chr4 70443016 70443292 -113845370 - MER50 LTR ERV1 0 734 439 1666 152 7 3 chr4 70443304 70443593 -113845069 - MER50 LTR ERV1 -444 290 1 376 224 14 9 chr4 70443653 70443768 -113844894 + MLT1I LTR MaLR 317 409 0 230 338 40 0 chr4 70443768 70443842 -113844820 + L2 LINE L2 3196 3272 0 21 0 0 0 chr4 70443842 70443863 -113844799 + AT_rich Low_complexity Low_complexity 1 21 0 689 249 83 31 chr4 70444864 70445093 -113843569 + MIR SINE MIR 21 261 -1 372 238 60 0 chr4 70445114 70445198 -113843464 + MIR SINE MIR 73 161 -101 204 272 239 0 chr4 70445480 70445572 -113843090 + L2 LINE L2 3150 3263 -9 204 143 0 0 chr4 70445702 70445744 -113842918 + (CGG)n Simple_repeat Simple_repeat 2 43 0 234 91 0 0 chr4 70447645 70447678 -113840984 + (T)n Simple_repeat Simple_repeat 1 33 0 22 0 0 0 chr4 70448486 70448508 -113840154 + AT_rich Low_complexity Low_complexity 1 22 0 1426 199 35 14 chr4 70448508 70448790 -113839872 - AluJb SINE Alu -24 288 1 2578 51 0 6 chr4 70449097 70449408 -113839254 - AluY SINE Alu 0 311 3 602 304 88 4 chr4 70450099 70450326 -113838336 + MIR SINE MIR 17 262 0 708 200 74 17 chr4 70451608 70451783 -113836879 + MER53 DNA DNA 4 188 -1 194 0 39 0 chr4 70452698 70452724 -113835938 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 1742 174 111 18 chr4 70452973 70453307 -113835355 - MLT1A1 LTR MaLR 0 365 1 406 283 5 50 chr4 70454749 70454947 -113833715 + L2 LINE L2 3121 3309 -4 * 460 224 56 16 chr4 70454933 70455058 -113833604 - L2 LINE L2 -5 3308 3179 1015 341 161 27 chr4 70455088 70455964 -113832698 + L2 LINE L2 2312 3311 -2 299 256 54 65 chr4 70457543 70457711 -113830951 + L1ME LINE L1 5704 5824 -297 189 228 53 53 chr4 70458542 70458599 -113830063 - MIR3 SINE MIR -22 186 130 483 306 44 28 chr4 70458640 70458861 -113829801 - MIR SINE MIR -26 236 7 1043 215 7 83 chr4 70459104 70459392 -113829270 + L1MC5 LINE L1 6696 6961 -1000 2869 218 35 70 chr4 70459411 70460393 -113828269 + L1MC5 LINE L1 6955 7901 -60 218 264 48 72 chr4 70460583 70460708 -113827954 + L2 LINE L2 2897 3018 -254 274 180 90 120 chr4 70460848 70460948 -113827714 - MIR SINE MIR -76 132 36 2340 100 0 3 chr4 70461705 70462016 -113826646 + AluSg SINE Alu 1 310 0 2336 76 21 0 chr4 70462288 70462576 -113826086 - AluY SINE Alu -17 294 1 1466 225 87 32 chr4 70463145 70463581 -113825081 - MLT1C LTR MaLR -7 460 1 203 184 0 0 chr4 70463705 70463743 -113824919 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 261 277 31 0 chr4 70463830 70463895 -113824767 - MER20B DNA MER1_type -654 129 63 7314 69 27 0 chr4 70464405 70465634 -113823028 - L1PA7 LINE L1 -2 6152 4910 233 326 53 0 chr4 70468653 70468748 -113819914 - MIR SINE MIR -62 200 101 21 0 0 0 chr4 70469025 70469046 -113819616 + AT_rich Low_complexity Low_complexity 1 21 0 326 331 39 8 chr4 70469097 70469227 -113819435 - MIR SINE MIR -55 153 20 508 330 71 13 chr4 70470058 70470282 -113818380 - MIR SINE MIR -6 256 20 222 289 96 12 chr4 70470299 70470382 -113818280 + MIR SINE MIR 108 197 -65 311 350 96 67 chr4 70471197 70471583 -113817079 - L2 LINE L2 -5 3267 2871 553 299 88 0 chr4 70471636 70471830 -113816832 + MIR SINE MIR 49 259 -3 761 196 98 57 chr4 70471949 70472143 -113816519 + MER3 DNA MER1_type 2 203 -6 388 231 88 97 chr4 70472154 70472345 -113816317 - MIR3 SINE MIR 0 208 19 708 179 76 7 chr4 70472794 70472939 -113815723 + L1M4c LINE L1 5 159 -6225 912 271 145 27 chr4 70473715 70474088 -113814574 + LTR33 LTR ERVL 1 417 -104 228 86 0 0 chr4 70474346 70474381 -113814281 + (TG)n Simple_repeat Simple_repeat 2 36 0 1748 237 67 2 chr4 70474403 70474837 -113813825 - MLT2B1 LTR ERVL -56 464 3 1238 216 24 40 chr4 70475177 70475505 -113813157 + MLT1A2 LTR MaLR 1 323 -51 318 217 183 17 chr4 70475644 70475759 -113812903 - L1ME4a LINE L1 -236 5885 5752 8416 65 9 5 chr4 70475815 70477045 -113811617 + L1P2 LINE L1 4323 5549 -605 184 345 35 11 chr4 70477182 70477269 -113811393 + L2 LINE L2 2992 3080 -192 455 240 56 8 chr4 70477337 70477462 -113811200 + L2 LINE L2 3166 3296 -17 183 42 0 0 chr4 70477463 70477487 -113811175 + (CAAT)n Simple_repeat Simple_repeat 1 24 0 5276 128 9 4 chr4 70477799 70478588 -113810074 - L1PA15 LINE L1 0 6165 5373 726 236 77 30 chr4 70479551 70479784 -113808878 + MIR SINE MIR 19 262 0 2898 19 0 0 chr4 70480340 70480656 -113808006 + AluYb8 SINE Alu 1 316 -2 270 343 99 42 chr4 70480962 70481560 -113807102 + L2 LINE L2 2472 3098 -174 218 191 0 0 chr4 70481743 70481785 -113806877 + L2 LINE L2 3264 3305 -8 196 236 83 14 chr4 70482383 70482455 -113806207 - MIR SINE MIR -1 261 185 368 292 51 92 chr4 70482462 70482873 -113805789 - MLT1J LTR MaLR -25 486 93 438 230 95 27 chr4 70482901 70483049 -113805613 - MIR SINE MIR -35 227 70 635 265 85 18 chr4 70483082 70483305 -113805357 + MIR SINE MIR 4 241 -21 1461 252 52 31 chr4 70483335 70483780 -113804882 + L1ME3 LINE L1 5703 6156 -6 21 0 0 0 chr4 70484604 70484625 -113804037 + AT_rich Low_complexity Low_complexity 1 21 0 422 239 22 0 chr4 70485074 70485166 -113803496 + Zaphod DNA AcHobo 3938 4031 0 266 163 0 0 chr4 70486376 70486419 -113802243 - L2 LINE L2 -8 3305 3263 347 203 41 73 chr4 70487118 70487241 -113801421 + MLT1C LTR MaLR 347 465 -2 24949 175 26 30 chr4 70487993 70493784 -113794878 + L1PA10 LINE L1 8 5912 -571 2175 112 0 13 chr4 70493784 70494088 -113794574 + AluSg SINE Alu 1 300 -10 24949 175 26 30 chr4 70494088 70494222 -113794440 + L1PA10 LINE L1 5912 6045 -438 3220 92 2 12 chr4 70494322 70494746 -113793916 + L1PA10 LINE L1 6060 6479 -4 2397 151 37 80 chr4 70496778 70497263 -113791399 + MLT2C2 LTR ERVL 1 464 0 24 32 0 0 chr4 70498114 70498145 -113790517 + AT_rich Low_complexity Low_complexity 1 31 0 465 323 138 23 chr4 70498159 70498687 -113789975 - L2 LINE L2 -9 3304 2719 14581 140 12 60 chr4 70498688 70501033 -113787629 + Tigger1 DNA MER2_type 1 2458 40 207 0 0 0 chr4 70501033 70501056 -113787606 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1948 93 3 89 chr4 70501058 70501382 -113787280 - AluY SINE Alu -15 296 1 14581 140 12 60 chr4 70501382 70501574 -113787088 + Tigger1 DNA MER2_type 2218 2418 0 8861 138 15 7 chr4 70501608 70504152 -113784510 - L1MA1 LINE L1 0 6302 3734 2061 108 4 0 chr4 70504152 70504431 -113784231 - L1PA7 LINE L1 -4 6150 5871 1990 132 13 13 chr4 70504531 70504835 -113783827 - AluSq SINE Alu -9 304 1 189 276 66 66 chr4 70505667 70505743 -113782919 + MIR SINE MIR 6 81 -181 190 271 14 43 chr4 70506686 70506756 -113781906 - MIR SINE MIR -72 190 123 913 234 96 4 chr4 70507776 70508015 -113780647 + MIR SINE MIR 2 262 0 2310 109 89 12 chr4 70509172 70509510 -113779152 + THE1B LTR MaLR 1 364 0 244 330 43 17 chr4 70509941 70510056 -113778606 - L2 LINE L2 -181 3091 2974 461 335 122 5 chr4 70510057 70510278 -113778384 + MIR SINE MIR 12 258 -4 9670 158 24 27 chr4 70510845 70511150 -113777512 + L1M4c LINE L1 639 943 -5439 1945 61 38 27 chr4 70511150 70511411 -113777251 + AluY SINE Alu 32 295 -16 9670 158 24 27 chr4 70511411 70513034 -113775628 + L1M4c LINE L1 943 2567 -3815 1519 153 12 4 chr4 70513040 70513295 -113775367 + L1MB3 LINE L1 5882 6138 -45 1640 165 51 24 chr4 70513297 70513630 -113775032 + THE1C LTR MaLR 34 375 0 2536 197 14 8 chr4 70513695 70514213 -113774449 + L1MB4 LINE L1 5642 6162 -18 474 283 154 50 chr4 70514734 70514946 -113773716 + L2 LINE L2 2864 3053 -260 234 0 0 0 chr4 70514946 70514972 -113773690 + (CA)n Simple_repeat Simple_repeat 1 26 0 474 283 154 50 chr4 70514972 70515162 -113773500 + L2 LINE L2 3053 3308 -5 1948 205 90 5 chr4 70516058 70516493 -113772169 + L1MD3 LINE L1 7522 7993 -2 2169 206 35 15 chr4 70516616 70517073 -113771589 - MER31B LTR ERV1 0 466 1 22 0 0 0 chr4 70518462 70518484 -113770178 + AT_rich Low_complexity Low_complexity 1 22 0 217 73 24 24 chr4 70519075 70519116 -113769546 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 297 313 90 15 chr4 70521000 70521134 -113767528 + MIR SINE MIR 2 146 -62 2677 119 11 3 chr4 70521239 70521600 -113767062 - THE1B LTR MaLR 0 364 1 415 250 42 21 chr4 70521620 70521764 -113766898 + MER104 DNA Tc2 31 177 -3 210 271 206 28 chr4 70523107 70523214 -113765448 + MIR SINE MIR 63 188 -74 5237 66 0 0 chr4 70523819 70524440 -113764222 + L1PA6 LINE L1 5523 6143 -11 14409 165 185 22 chr4 70524472 70526315 -113762347 + L1M1 LINE L1 174 1716 -5849 2297 84 0 13 chr4 70526315 70526614 -113762048 + AluY SINE Alu 1 295 -16 14409 165 185 22 chr4 70526614 70528148 -113760514 + L1M1 LINE L1 1716 4111 -3454 4013 131 38 21 chr4 70528154 70528313 -113760349 + L1MA5 LINE L1 5624 5779 -521 2302 104 0 13 chr4 70528313 70528622 -113760040 + AluY SINE Alu 1 305 -6 4013 131 38 21 chr4 70528622 70529128 -113759534 + L1MA5 LINE L1 5779 6300 0 1639 99 17 0 chr4 70529132 70529365 -113759297 + L1MA5 LINE L1 6037 6273 -27 21 0 0 0 chr4 70529365 70529386 -113759276 + AT_rich Low_complexity Low_complexity 1 21 0 2079 135 167 14 chr4 70529527 70529898 -113758764 - MSTA LTR MaLR 0 428 1 189 0 0 0 chr4 70530231 70530252 -113758410 + (TCTA)n Simple_repeat Simple_repeat 2 22 0 664 194 9 23 chr4 70530385 70530936 -113757726 + GA-rich Low_complexity Low_complexity 1 543 0 397 164 45 22 chr4 70530959 70531093 -113757569 + GA-rich Low_complexity Low_complexity 4 140 0 422 269 145 4 chr4 70531100 70531357 -113757305 + LTR16C LTR ERVL 180 491 0 303 71 0 0 chr4 70531702 70531744 -113756918 + (TC)n Simple_repeat Simple_repeat 2 43 0 23 54 0 0 chr4 70531985 70532022 -113756640 + AT_rich Low_complexity Low_complexity 1 37 0 694 273 11 16 chr4 70532312 70532495 -113756167 + MIR SINE MIR 37 218 -44 5201 50 0 0 chr4 70533563 70534158 -113754504 - L1PA5 LINE L1 -4 6150 5556 3118 45 0 2 chr4 70534158 70534705 -113753957 + L1PA5 LINE L1 5009 5554 -600 211 333 35 0 chr4 70534926 70535013 -113753649 + MIR3 SINE MIR 102 191 -17 1694 188 0 69 chr4 70535105 70535466 -113753196 + MLT1A2 LTR MaLR 39 374 0 225 0 0 0 chr4 70536181 70536206 -113752456 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 540 247 89 13 chr4 70537158 70537316 -113751346 - L2 LINE L2 -1 3312 3143 3467 141 33 22 chr4 70537353 70537955 -113750707 + L1MB3 LINE L1 5573 6181 -2 22 0 0 0 chr4 70537955 70537977 -113750685 + AT_rich Low_complexity Low_complexity 1 22 0 574 318 72 22 chr4 70538037 70538260 -113750402 - L2 LINE L2 -467 2847 2614 2161 148 75 5 chr4 70538265 70538649 -113750013 - MSTB LTR MaLR -15 411 1 699 292 9 13 chr4 70538649 70538882 -113749780 - L2 LINE L2 -696 2618 2387 213 277 31 0 chr4 70538957 70539022 -113749640 + L2 LINE L2 3247 3313 0 906 188 117 25 chr4 70540831 70541070 -113747592 + MIR SINE MIR 2 262 0 228 394 0 0 chr4 70541213 70541317 -113747345 - MIR SINE MIR -74 188 85 460 269 205 39 chr4 70541799 70542185 -113746477 - LTR33 LTR ERVL -66 455 6 428 314 41 24 chr4 70543088 70543257 -113745405 - MIR3 SINE MIR -32 176 5 1388 273 151 51 chr4 70543741 70543832 -113744830 + L2 LINE L2 1871 1952 -1361 1239 126 16 0 chr4 70543832 70544014 -113744648 - L1PA16 LINE L1 -9 6157 5973 1388 273 151 51 chr4 70544014 70545231 -113743431 + L2 LINE L2 1952 3313 0 312 342 8 0 chr4 70545252 70545369 -113743293 + MIR SINE MIR 91 208 -54 450 218 64 9 chr4 70545502 70545612 -113743050 - L2 LINE L2 -9 3304 3189 333 336 60 28 chr4 70546102 70546319 -113742343 - MIR SINE MIR -30 232 9 319 179 15 60 chr4 70547243 70547310 -113741352 + AluJo/FLAM SINE Alu 59 122 -180 371 194 28 28 chr4 70547311 70547383 -113741279 - AluJb SINE Alu -113 189 118 698 193 97 40 chr4 70548066 70548242 -113740420 + MER58C DNA MER1_type 27 212 -3 346 248 89 106 chr4 70548333 70548748 -113739914 - LTR40c LTR ERVL -57 408 1 416 221 8 90 chr4 70548758 70548880 -113739782 - MIR SINE MIR -72 190 79 283 273 58 34 chr4 70548881 70548970 -113739692 - MIR SINE MIR -89 119 28 2343 113 0 0 chr4 70549066 70549376 -113739286 - AluSg SINE Alu 0 310 1 198 265 231 60 chr4 70550193 70550310 -113738352 + MIR SINE MIR 2 138 -124 27 29 0 0 chr4 70550869 70550903 -113737759 + AT_rich Low_complexity Low_complexity 1 34 0 255 263 53 0 chr4 70551950 70552007 -113736655 - L2 LINE L2 0 3313 3254 4424 186 30 11 chr4 70552355 70553201 -113735461 - MER21B LTR ERV1 -1 862 1 224 310 92 70 chr4 70553387 70553616 -113735046 - L2 LINE L2 -829 2485 2252 198 286 0 29 chr4 70554137 70554207 -113734455 - L2 LINE L2 -1070 2244 2177 1816 248 88 23 chr4 70554505 70555190 -113733472 + L1MEc LINE L1 34 762 -5634 1729 210 24 0 chr4 70555198 70555536 -113733126 - MER21B LTR ERV1 -241 622 277 1233 266 75 21 chr4 70555569 70556222 -113732440 + L1MEc LINE L1 1105 1792 -4604 23 0 0 0 chr4 70556227 70556250 -113732412 + AT_rich Low_complexity Low_complexity 1 23 0 1779 258 63 31 chr4 70556291 70556865 -113731797 + MLT1E LTR MaLR 2 593 0 338 225 28 35 chr4 70556876 70557018 -113731644 + L1MEc LINE L1 1789 1929 -4467 571 188 29 7 chr4 70557104 70557242 -113731420 + L1MA10 LINE L1 6180 6320 -14 1823 154 59 0 chr4 70557839 70558150 -113730512 + AluSx SINE Alu 1 327 0 200 387 43 16 chr4 70558488 70558674 -113729988 - L2 LINE L2 -556 2758 2568 662 208 157 46 chr4 70558694 70558910 -113729752 - MIR SINE MIR -2 260 21 536 318 113 51 chr4 70558990 70559681 -113728981 + L2 LINE L2 2529 3272 0 244 239 0 70 chr4 70560774 70560845 -113727817 + MIR SINE MIR 28 93 -169 7151 70 1 1 chr4 70562714 70564156 -113724506 - L1P3 LINE L1 -366 5788 4347 914 133 24 0 chr4 70564161 70564327 -113724335 - L1 LINE L1 -2407 5158 4989 2791 159 22 3 chr4 70564327 70564917 -113723745 - L1 LINE L1 -2475 5090 4490 18654 155 49 6 chr4 70564917 70568397 -113720265 - L1 LINE L1 -3929 3636 9 263 312 163 28 chr4 70568403 70568618 -113720044 - L2 LINE L2 -620 2694 2451 30 0 0 0 chr4 70568953 70568983 -113719679 + AT_rich Low_complexity Low_complexity 1 30 0 875 313 84 39 chr4 70569274 70569715 -113718947 - L2 LINE L2 -849 2465 2005 22 35 0 0 chr4 70570559 70570588 -113718074 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr4 70570702 70570722 -113717940 + (A)n Simple_repeat Simple_repeat 1 20 0 331 319 89 25 chr4 70570752 70570909 -113717753 + MIR SINE MIR 48 214 -48 241 340 43 21 chr4 70571429 70571523 -113717139 - MIR SINE MIR -110 152 57 521 283 72 63 chr4 70571582 70571900 -113716762 + MLT1H LTR MaLR 26 346 -203 1058 165 0 12 chr4 70572211 70572375 -113716287 - FRAM SINE Alu -18 158 1 282 343 80 22 chr4 70573282 70573419 -113715243 + L2 LINE L2 3169 3313 0 204 353 168 0 chr4 70574393 70574512 -113714150 + MIR3 SINE MIR 21 159 -49 23 86 0 0 chr4 70574619 70574677 -113713985 + AT_rich Low_complexity Low_complexity 1 58 0 190 391 31 0 chr4 70574831 70574895 -113713767 + L3b LINE CR1 1513 1578 -5 709 161 15 0 chr4 70575720 70575857 -113712805 + L1MB2 LINE L1 5994 6132 -39 226 356 114 0 chr4 70576377 70576509 -113712153 + MIR3 SINE MIR 32 178 -30 609 180 17 90 chr4 70576858 70577036 -113711626 + L1M1 LINE L1 14 178 -7387 1081 139 0 0 chr4 70577047 70577198 -113711464 + AluY SINE Alu 141 291 -20 31226 112 11 9 chr4 70577199 70579752 -113708910 + L1P LINE L1 1 2568 -3578 223 49 49 0 chr4 70579752 70579793 -113708869 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 31226 112 11 9 chr4 70579793 70582165 -113706497 + L1P LINE L1 2568 4934 -1212 366 316 23 45 chr4 70584033 70584210 -113704452 - MIR SINE MIR -70 192 20 279 299 91 49 chr4 70584424 70584688 -113703974 + MARNA DNA Mariner 83 357 -229 264 322 89 7 chr4 70585625 70585771 -113702891 + MIR3 SINE MIR 36 193 -15 328 315 102 60 chr4 70586181 70586779 -113701883 + L2 LINE L2 2648 3276 -37 576 294 28 6 chr4 70587733 70587910 -113700752 + MIR SINE MIR 2 182 -80 523 285 88 21 chr4 70589091 70589284 -113699378 + MIR SINE MIR 2 207 -55 190 222 0 0 chr4 70589297 70589333 -113699329 + MIR SINE MIR 7 42 -220 2306 89 0 0 chr4 70589333 70589625 -113699037 - AluSg SINE Alu -18 292 1 548 175 95 36 chr4 70589627 70589764 -113698898 + MIR SINE MIR 93 237 -25 195 211 192 0 chr4 70589784 70589836 -113698826 + L2 LINE L2 3232 3293 -20 887 202 5 50 chr4 70590595 70590660 -113698002 - MER5A DNA MER1_type 0 189 123 2131 103 30 10 chr4 70590660 70590961 -113697701 + AluY SINE Alu 1 307 -4 887 202 5 50 chr4 70590961 70591093 -113697569 - MER5A DNA MER1_type -66 123 1 293 314 177 75 chr4 70591121 70591522 -113697140 + L2 LINE L2 2827 3268 -4 737 206 58 35 chr4 70591670 70591927 -113696735 + Charlie7 DNA MER1_type 1624 1886 -726 262 353 0 10 chr4 70591929 70592031 -113696631 + MIR SINE MIR 42 142 -66 924 102 34 0 chr4 70592040 70592187 -113696475 + L1MD3 LINE L1 7839 7990 -5 1054 262 53 48 chr4 70592231 70592609 -113696053 + L2 LINE L2 2919 3298 -15 212 257 71 79 chr4 70593590 70593730 -113694932 - L2 LINE L2 -10 3303 3165 300 307 99 0 chr4 70593868 70593969 -113694693 + MIR SINE MIR 42 152 -56 25 0 0 0 chr4 70594707 70594732 -113693930 + AT_rich Low_complexity Low_complexity 1 25 0 487 227 153 18 chr4 70594733 70594896 -113693766 - MIR SINE MIR 0 262 78 1501 262 54 33 chr4 70595861 70596099 -113692563 - L2 LINE L2 -5 3308 3076 2297 123 11 35 chr4 70596099 70596472 -113692190 - THE1B LTR MaLR 0 364 1 1501 262 54 33 chr4 70596472 70596828 -113691834 - L2 LINE L2 -237 3076 2701 377 280 30 15 chr4 70596989 70597121 -113691541 + MIR SINE MIR 79 212 -50 1018 162 95 52 chr4 70598905 70599115 -113689547 + MER20 DNA MER1_type 1 219 0 244 175 0 175 chr4 70600623 70600720 -113687942 + MIR SINE MIR 108 187 -75 186 43 0 0 chr4 70601268 70601291 -113687371 + (T)n Simple_repeat Simple_repeat 1 23 0 281 303 54 1 chr4 70602633 70602737 -113685925 - MIR SINE MIR -37 171 93 187 333 105 0 chr4 70602762 70602819 -113685843 - L2 LINE L2 -72 3200 3138 * 269 247 0 27 chr4 70602798 70602871 -113685791 - MIR SINE MIR -178 84 14 757 238 134 0 chr4 70603357 70603559 -113685103 - MIR SINE MIR -21 241 13 383 286 18 18 chr4 70604443 70604555 -113684107 - MLT2E LTR ERVL -485 143 32 636 299 10 5 chr4 70604901 70605105 -113683557 - ERVL-E LTR ERVL -330 5434 5230 534 240 0 8 chr4 70607162 70607283 -113681379 - MIR SINE MIR -122 140 21 522 234 182 0 chr4 70607295 70607449 -113681213 - MER5A DNA MER1_type -1 188 7 295 226 29 171 chr4 70607590 70607762 -113680900 + MER20B DNA MER1_type 63 217 -2 958 282 11 19 chr4 70608246 70608508 -113680154 + MIR SINE MIR 1 260 -2 266 196 89 0 chr4 70608568 70608624 -113680038 - MIR SINE MIR -86 176 116 555 203 68 0 chr4 70608673 70608791 -113679871 - MIR SINE MIR -1 261 136 6755 178 128 28 chr4 70608792 70610314 -113678348 + MER52A LTR ERV1 1 1755 0 309 274 8 77 chr4 70610322 70610439 -113678223 - MIR SINE MIR -131 131 23 2190 89 3 7 chr4 70610553 70610855 -113677807 - AluSx SINE Alu -11 301 1 386 337 16 27 chr4 70610951 70611135 -113677527 + MIR SINE MIR 47 228 -34 993 296 99 13 chr4 70613099 70613484 -113675178 - LTR16A LTR ERVL -17 433 16 1157 348 36 23 chr4 70613916 70614579 -113674083 - ERVL-E LTR ERVL -631 5023 4352 1165 283 18 7 chr4 70614614 70614893 -113673769 - HERV16 LTR ERVL -1910 3086 2805 939 199 6 6 chr4 70614897 70615058 -113673604 - MLT1E2 LTR MaLR 0 626 466 256 333 0 0 chr4 70615066 70615147 -113673515 - HERV16 LTR ERVL -4820 176 96 1386 269 61 37 chr4 70615893 70616384 -113672278 + MLT1J LTR MaLR 1 503 -8 4471 113 27 11 chr4 70617888 70618545 -113670117 + L1PA16 LINE L1 5491 6158 -8 652 285 101 0 chr4 70618576 70618804 -113669858 - MIR SINE MIR -10 252 2 1248 198 181 25 chr4 70618913 70619266 -113669396 + MLT1C LTR MaLR 15 422 -45 192 77 0 0 chr4 70619266 70619292 -113669370 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 2264 109 0 0 chr4 70619484 70619786 -113668876 + AluSc SINE Alu 1 302 -7 25 31 0 0 chr4 70620377 70620409 -113668253 + AT_rich Low_complexity Low_complexity 1 32 0 1985 198 20 8 chr4 70620563 70620921 -113667741 + MLT1A1 LTR MaLR 4 365 0 1377 235 82 16 chr4 70622171 70622699 -113665963 + MLT2E LTR ERVL 1 618 -10 373 283 91 64 chr4 70622736 70622923 -113665739 - MIR SINE MIR -7 255 64 184 380 65 0 chr4 70623146 70623238 -113665424 - MIR SINE MIR -77 185 88 233 372 107 0 chr4 70623447 70623568 -113665094 - L2 LINE L2 -3 3269 3136 2164 89 11 0 chr4 70624136 70624416 -113664246 + AluY SINE Alu 29 311 0 264 77 0 0 chr4 70625630 70625669 -113662993 + (TTA)n Simple_repeat Simple_repeat 1 39 0 37720 97 11 7 chr4 70625670 70626601 -113662061 - L1PA6 LINE L1 -18 6136 5211 216 0 0 0 chr4 70626601 70626625 -113662037 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 37720 97 11 7 chr4 70626625 70631798 -113656864 - L1PA6 LINE L1 -943 5211 11 466 191 206 15 chr4 70632181 70632312 -113656350 + MER5A DNA MER1_type 34 189 0 2053 225 34 28 chr4 70632379 70632877 -113655785 - LTR53 LTR ERVL -18 501 1 261 328 46 46 chr4 70633064 70633195 -113655467 - MIR SINE MIR -19 243 113 610 293 37 11 chr4 70633639 70633830 -113654832 + MIR SINE MIR 2 197 -65 345 47 0 0 chr4 70634291 70634334 -113654328 + (TC)n Simple_repeat Simple_repeat 1 43 0 272 271 0 0 chr4 70635444 70635503 -113653159 - MIR SINE MIR -1 261 203 1143 286 68 39 chr4 70635518 70636010 -113652652 + MLT1G1 LTR MaLR 26 548 -1 599 277 85 11 chr4 70636010 70636187 -113652475 - MIR SINE MIR -71 191 2 427 221 11 21 chr4 70636627 70636722 -113651940 + FLAM SINE Alu 39 132 -11 43250 38 21 1 chr4 70637402 70643436 -113645226 + L1PA2 LINE L1 1 6155 0 28 0 0 0 chr4 70643477 70643505 -113645157 + AT_rich Low_complexity Low_complexity 1 28 0 384 22 0 0 chr4 70643695 70643740 -113644922 + (TA)n Simple_repeat Simple_repeat 1 45 0 1552 105 5 0 chr4 70643740 70643950 -113644712 - L1PA7 LINE L1 -19 6135 5925 643 114 0 0 chr4 70644312 70644400 -113644262 + L1PA6 LINE L1 2199 2286 -3860 7302 40 8 0 chr4 70644401 70645295 -113643367 - L1PA4 LINE L1 -2303 3843 2943 13069 52 2 0 chr4 70645295 70647595 -113641067 + L1PA4 LINE L1 3851 6153 -2 16083 69 6 4 chr4 70647705 70651580 -113637082 + L1PA6 LINE L1 2273 6149 -5 180 0 0 0 chr4 70651582 70651602 -113637060 + (GA)n Simple_repeat Simple_repeat 2 21 0 1623 180 10 27 chr4 70653418 70653718 -113634944 + AluJo SINE Alu 1 295 -17 1884 151 51 11 chr4 70653718 70654090 -113634572 + L1MD1 LINE L1 5856 6242 0 383 291 85 7 chr4 70654090 70654231 -113634431 + MIR3 SINE MIR 23 174 -34 198 276 92 13 chr4 70654652 70654728 -113633934 - L2 LINE L2 -50 3263 3182 420 20 0 0 chr4 70656499 70656548 -113632114 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 201 297 69 30 chr4 70657227 70657328 -113631334 + MER5A DNA MER1_type 84 188 -1 * 673 263 60 18 chr4 70657328 70657544 -113631118 + MIR SINE MIR 8 232 -30 788 311 131 56 chr4 70657602 70658411 -113630251 - L3 LINE CR1 -448 1129 260 710 137 0 40 chr4 70658577 70658701 -113629961 - L1PB4 LINE L1 0 6156 6038 336 318 20 45 chr4 70658716 70658914 -113629748 + MER117 DNA MER1_type 5 197 0 1448 279 95 39 chr4 70659252 70659812 -113628850 + MLT1G1 LTR MaLR 5 595 0 21 0 0 0 chr4 70660872 70660893 -113627769 + AT_rich Low_complexity Low_complexity 1 21 0 2257 192 24 5 chr4 70662312 70662728 -113625934 - MSTB LTR MaLR 0 426 3 8688 185 27 5 chr4 70662729 70664343 -113624319 - MSTB-int LTR MaLR 0 1651 2 2341 167 44 17 chr4 70664346 70664759 -113623903 - MSTB LTR MaLR -2 424 1 276 100 0 0 chr4 70665110 70665150 -113623512 + (TG)n Simple_repeat Simple_repeat 1 40 0 2329 107 11 8 chr4 70666753 70667107 -113621555 - THE1A LTR MaLR 0 355 1 11876 86 8 1 chr4 70667107 70668676 -113619986 - THE1A-int LTR MaLR 0 1580 1 2173 133 8 25 chr4 70668676 70669037 -113619625 - THE1A LTR MaLR 0 355 1 252 297 10 30 chr4 70669234 70669335 -113619327 + MLT1J2 LTR MaLR 284 382 -68 453 259 93 0 chr4 70669439 70669547 -113619115 + MIR SINE MIR 7 124 -138 14102 179 42 11 chr4 70669547 70670341 -113618321 - L1MA4 LINE L1 0 6188 5420 186 43 0 0 chr4 70670341 70670364 -113618298 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 14102 179 42 11 chr4 70670364 70674038 -113614624 - L1MA4 LINE L1 -768 5420 1573 3659 260 22 25 chr4 70674058 70675302 -113613360 - L1MA4 LINE L1 -4098 936 250 631 251 58 6 chr4 70676261 70676432 -113612230 - L1MA4 LINE L1 -5775 180 1 365 280 76 0 chr4 70676433 70676565 -113612097 + MIR SINE MIR 118 259 -3 2347 83 0 0 chr4 70677794 70678083 -113610579 - AluY SINE Alu -10 301 13 237 304 128 0 chr4 70678156 70678258 -113610404 - MIR SINE MIR -60 148 34 214 306 0 42 chr4 70678502 70678574 -113610088 - L2 LINE L2 0 3313 3245 809 306 75 14 chr4 70679799 70680146 -113608516 - LTR16C LTR ERVL -35 456 89 21 0 0 0 chr4 70680321 70680342 -113608320 + AT_rich Low_complexity Low_complexity 1 21 0 1251 195 119 0 chr4 70680342 70680593 -113608069 - AluJo SINE Alu -31 281 1 184 345 122 39 chr4 70681048 70681384 -113607278 - L2 LINE L2 -346 2968 2605 235 214 71 0 chr4 70681507 70681563 -113607099 + MER91A DNA MER1_type 127 186 -10 255 61 0 0 chr4 70681579 70681612 -113607050 + (CA)n Simple_repeat Simple_repeat 2 34 0 375 311 93 20 chr4 70682653 70682804 -113605858 + MIR SINE MIR 11 172 -90 519 332 24 59 chr4 70683051 70683304 -113605358 + MIR SINE MIR 2 245 -17 1799 181 3 0 chr4 70683517 70683809 -113604853 - AluJb SINE Alu -12 300 8 11419 79 9 1 chr4 70683993 70686328 -113602334 - L1PA7 LINE L1 0 6154 3803 878 249 225 15 chr4 70686732 70687164 -113601498 + LTR50 LTR ERVL 1 606 -189 488 365 63 0 chr4 70689245 70689467 -113599195 - MIR SINE MIR -2 260 25 1516 160 63 24 chr4 70689497 70689579 -113599083 - MER2 DNA MER2_type 0 344 267 2371 97 3 0 chr4 70689579 70689890 -113598772 + AluSp SINE Alu 1 312 -1 1516 160 63 24 chr4 70689890 70690138 -113598524 - MER2 DNA MER2_type -77 267 1 190 314 0 0 chr4 70690642 70690693 -113597969 - MIR SINE MIR -114 148 98 2178 92 20 7 chr4 70690980 70691272 -113597390 - AluSg SINE Alu -14 296 1 587 298 102 7 chr4 70691297 70691520 -113597142 + MIR SINE MIR 1 241 -21 1143 275 94 23 chr4 70692042 70692519 -113596143 + MLT1J LTR MaLR 1 511 0 1149 207 78 41 chr4 70692857 70693176 -113595486 + MER2 DNA MER2_type 2 332 -13 23 68 0 0 chr4 70693741 70693785 -113594877 + AT_rich Low_complexity Low_complexity 1 44 0 611 54 0 67 chr4 70693785 70693934 -113594728 + (TA)n Simple_repeat Simple_repeat 2 140 0 1143 58 0 7 chr4 70693934 70694073 -113594589 - AluYb8 SINE Alu -180 138 1 872 264 59 43 chr4 70695217 70695520 -113593142 + MSTD LTR MaLR 1 308 -88 4491 210 44 48 chr4 70695748 70696923 -113591739 - L1MC4 LINE L1 -160 7882 6713 1620 148 4 0 chr4 70698024 70698281 -113590381 - Tigger2 DNA MER2_type 0 2718 2461 4463 151 18 1 chr4 70698343 70699079 -113589583 - Tigger2 DNA MER2_type -1969 749 2 248 181 60 23 chr4 70699107 70699240 -113589422 + (TTATA)n Simple_repeat Simple_repeat 2 139 0 14418 187 41 20 chr4 70699565 70705343 -113583319 + L1P5 LINE L1 116 6189 -678 2532 70 0 0 chr4 70705343 70705645 -113583017 + AluY SINE Alu 1 302 -9 14418 187 41 20 chr4 70705645 70705972 -113582690 + L1P5 LINE L1 6189 6507 -360 306 153 0 0 chr4 70705972 70706031 -113582631 + (TA)n Simple_repeat Simple_repeat 1 59 0 254 264 0 22 chr4 70706032 70706123 -113582539 - L1MC4 LINE L1 -1340 6702 6614 453 219 0 0 chr4 70706132 70706246 -113582416 + (TA)n Simple_repeat Simple_repeat 1 114 0 2576 96 24 21 chr4 70706255 70706630 -113582032 + L1PB1 LINE L1 5776 6151 0 26 0 0 0 chr4 70708429 70708455 -113580207 + AT_rich Low_complexity Low_complexity 1 26 0 339 272 48 10 chr4 70710352 70710455 -113578207 + MER5B DNA MER1_type 4 110 -68 2313 132 12 77 chr4 70710941 70711301 -113577361 + MLT1B LTR MaLR 1 383 -7 405 0 0 0 chr4 70711301 70711346 -113577316 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 2313 132 12 77 chr4 70711346 70711357 -113577305 + MLT1B LTR MaLR 383 346 -44 2112 110 7 0 chr4 70711357 70711638 -113577024 - AluSx SINE Alu -29 283 1 2313 132 12 77 chr4 70711638 70711682 -113576980 + MLT1B LTR MaLR 345 390 0 6088 202 29 21 chr4 70712195 70713750 -113574912 + L1PA13 LINE L1 1 1660 -5127 2660 93 3 0 chr4 70714048 70714404 -113574258 + L1P3 LINE L1 742 1098 -5363 * 3149 220 17 4 chr4 70714402 70715126 -113573536 - L1P LINE L1 -2965 3181 2449 4741 104 3 5 chr4 70715126 70715752 -113572910 - HSMAR1 DNA Mariner 0 1287 663 3177 94 7 20 chr4 70715745 70716191 -113572471 - HSMAR1 DNA Mariner -847 440 1 * 4876 238 34 24 chr4 70716191 70717620 -113571042 - L1P LINE L1 -3695 2451 1009 2098 138 7 0 chr4 70717623 70717919 -113570743 - AluSp SINE Alu -15 298 1 19810 120 16 9 chr4 70717923 70721524 -113567138 - L1PA7 LINE L1 -2 6152 2530 2545 151 12 2 chr4 70721524 70721936 -113566726 + L1P LINE L1 3638 4053 -2093 2059 89 60 0 chr4 70722860 70723200 -113565462 - AluSq SINE Alu 0 356 1 1709 70 9 0 chr4 70723827 70724041 -113564621 - L1PA4 LINE L1 -3 6152 5937 * 26041 52 1 5 chr4 70724036 70727937 -113560725 - L1PA2 LINE L1 0 6155 2273 13067 50 2 0 chr4 70728047 70730346 -113558316 - L1PA4 LINE L1 -2 6153 3851 7302 40 8 0 chr4 70730346 70731240 -113557422 + L1PA4 LINE L1 2943 3843 -2303 13983 134 21 20 chr4 70731241 70733514 -113555148 - L1PA2 LINE L1 -3860 2286 11 1365 225 0 20 chr4 70733533 70733826 -113554836 - AluJo SINE Alu -21 291 5 932 133 0 15 chr4 70733850 70733985 -113554677 - FLAM_C SINE Alu 0 133 1 594 165 0 0 chr4 70733991 70734118 -113554544 + CT-rich Low_complexity Low_complexity 2 128 0 189 0 0 0 chr4 70734118 70734139 -113554523 + (CA)n Simple_repeat Simple_repeat 1 21 0 332 283 97 0 chr4 70734547 70734660 -113554002 + L2 LINE L2 3190 3313 0 184 196 65 0 chr4 70735239 70735285 -113553377 + MIR SINE MIR 86 134 -74 550 304 206 16 chr4 70735676 70736235 -113552427 - L1MC4a LINE L1 -462 5659 5269 1501 192 36 78 chr4 70736474 70736948 -113551714 + LTR37B LTR ERV1 15 468 0 257 337 10 0 chr4 70736958 70737056 -113551606 - L1MC4a LINE L1 -1164 4982 4884 916 279 42 31 chr4 70737163 70737342 -113551320 - L1MC4a LINE L1 -1311 4835 4659 1709 184 0 3 chr4 70737342 70737635 -113551027 - AluJo SINE Alu -20 292 1 916 279 42 31 chr4 70737635 70738032 -113550630 - L1MC4a LINE L1 -1487 4659 4253 1753 183 13 17 chr4 70739778 70740078 -113548584 + MER70B LTR ERVL 181 479 -99 238 257 54 14 chr4 70740126 70740200 -113548462 + L3 LINE CR1 1498 1574 -3 2339 189 54 7 chr4 70742056 70742463 -113546199 + MSTB LTR MaLR 1 426 0 6347 213 44 46 chr4 70742465 70744044 -113544618 + MSTB-int LTR MaLR 3 1578 -2 2488 164 31 22 chr4 70744056 70744472 -113544190 + MSTB LTR MaLR 3 422 -4 539 312 129 19 chr4 70745431 70745848 -113542814 + L2 LINE L2 1801 2263 -1051 36872 77 8 5 chr4 70745866 70750158 -113538504 + L1PA5 LINE L1 4 4324 -1830 5366 77 22 7 chr4 70750158 70750870 -113537792 + SVA Other Other 664 1386 0 36872 77 8 5 chr4 70750870 70752705 -113535957 + L1PA5 LINE L1 4324 6152 -2 467 263 110 22 chr4 70752714 70752942 -113535720 + L2 LINE L2 2275 2522 -792 270 244 33 67 chr4 70752997 70753087 -113535575 - L2 LINE L2 -37 3235 3149 339 242 203 16 chr4 70753189 70753317 -113535345 + L1ME4a LINE L1 5954 6105 -16 298 310 60 39 chr4 70753676 70753908 -113534754 + L2 LINE L2 1712 1948 -1366 216 341 0 24 chr4 70753914 70753996 -113534666 + L2 LINE L2 2923 3002 -270 1679 210 22 0 chr4 70754141 70754507 -113534155 + L1ME1 LINE L1 5582 5955 -211 2077 139 10 0 chr4 70754575 70754884 -113533778 + AluSx SINE Alu 1 312 0 893 239 40 5 chr4 70754897 70755119 -113533543 + L1ME1 LINE L1 5932 6161 -5 21 0 0 0 chr4 70755298 70755319 -113533343 + AT_rich Low_complexity Low_complexity 1 21 0 208 286 0 79 chr4 70755319 70755382 -113533280 + L2 LINE L2 3134 3191 -81 247 276 105 9 chr4 70756883 70756988 -113531674 - MIR SINE MIR -70 192 78 727 157 0 45 chr4 70758628 70758762 -113529900 + FLAM_A SINE Alu 4 131 -2 555 270 101 23 chr4 70759064 70759371 -113529291 - LTR16C LTR ERVL 0 491 161 310 301 52 44 chr4 70759698 70759834 -113528828 + L2 LINE L2 2926 3062 -210 198 328 15 0 chr4 70759977 70760044 -113528618 + L2 LINE L2 3208 3275 -38 186 43 0 0 chr4 70761307 70761330 -113527332 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 636 346 54 54 chr4 70761705 70762188 -113526474 + L2 LINE L2 2806 3288 -25 576 182 42 0 chr4 70762816 70762959 -113525703 - AluSc SINE Alu -6 303 155 2104 107 3 14 chr4 70763345 70763636 -113525026 - AluSc SINE Alu -21 288 1 27269 118 26 62 chr4 70763902 70766343 -113522319 + L1PA7 LINE L1 4 2531 -3623 2105 84 24 30 chr4 70766343 70766639 -113522023 + AluY SINE Alu 1 294 -17 27269 118 26 62 chr4 70766639 70770591 -113518071 + L1PA7 LINE L1 2531 6152 -2 504 302 34 17 chr4 70770870 70771049 -113517613 - MIR SINE MIR -34 228 47 182 307 23 45 chr4 70771353 70771441 -113517221 + L3 LINE CR1 1009 1094 -483 658 339 71 23 chr4 70771509 70771819 -113516843 + L3 LINE CR1 1249 1573 -4 1826 169 79 81 chr4 70771860 70772364 -113516298 - MLT1D LTR MaLR 0 505 3 333 232 72 14 chr4 70772839 70772977 -113515685 - MER117 DNA MER1_type -49 148 3 994 291 53 53 chr4 70773248 70773773 -113514889 - MLT1K LTR MaLR -50 538 14 349 318 113 33 chr4 70774114 70774265 -113514397 + MIR SINE MIR 28 144 -64 471 229 72 106 chr4 70774309 70774545 -113514117 + MLT1H LTR MaLR 44 271 -278 5880 62 5 0 chr4 70774614 70775386 -113513276 - L1PA6 LINE L1 -15 6139 5364 407 266 78 36 chr4 70775386 70775578 -113513084 + MLT1H LTR MaLR 338 537 -18 186 71 0 0 chr4 70776487 70776515 -113512147 + (TTTTTG)n Simple_repeat Simple_repeat 4 31 0 2273 99 0 3 chr4 70776628 70776932 -113511730 - AluY SINE Alu -8 303 1 405 228 0 0 chr4 70778642 70778734 -113509928 + L1ME3A LINE L1 4456 4547 -1599 348 254 138 27 chr4 70779001 70779225 -113509437 + L1ME3A LINE L1 5689 5937 -233 24 0 0 0 chr4 70780064 70780088 -113508574 + AT_rich Low_complexity Low_complexity 1 24 0 1002 230 22 57 chr4 70781000 70781317 -113507345 - L2 LINE L2 0 3313 3008 311 177 0 0 chr4 70781484 70781546 -113507116 + L1ME LINE L1 5757 5818 -303 489 341 108 22 chr4 70782097 70782549 -113506113 + L1M4 LINE L1 2736 3226 -2920 2188 116 39 36 chr4 70782691 70783054 -113505608 + THE1B LTR MaLR 1 364 0 6025 97 3 0 chr4 70784050 70785146 -113503516 - L1PA8A LINE L1 -2 6129 5021 556 131 20 0 chr4 70785146 70785245 -113503417 - L1PA8A LINE L1 -57 6074 5974 357 121 0 0 chr4 70785248 70785306 -113503356 - L1PA8A LINE L1 -1153 4993 4936 874 236 212 3 chr4 70786430 70786816 -113501846 + MLT1C LTR MaLR 1 467 0 785 189 0 0 chr4 70787508 70787672 -113500990 + L1MA4 LINE L1 6020 6183 -117 1458 51 0 0 chr4 70787672 70787850 -113500812 + L1PA5 LINE L1 5977 6154 0 702 149 15 0 chr4 70787851 70787985 -113500677 + L1MA4 LINE L1 6160 6295 -5 293 209 0 15 chr4 70788061 70788128 -113500534 + MLT1L LTR MaLR 1 66 -549 809 293 15 75 chr4 70788239 70788628 -113500034 + MLT1J LTR MaLR 1 366 -145 329 242 186 31 chr4 70788805 70788999 -113499663 + MLT1J LTR MaLR 288 511 0 1808 152 52 3 chr4 70789207 70789516 -113499146 - MLT1C LTR MaLR -2 465 142 599 282 39 34 chr4 70789566 70789924 -113498738 + HAL1 LINE L1 1211 1570 -937 365 256 67 35 chr4 70790007 70790147 -113498515 + MLT1L LTR MaLR 139 281 -334 726 33 0 0 chr4 70790147 70790238 -113498424 + L1PA4 LINE L1 6062 6152 -3 365 256 67 35 chr4 70790238 70790264 -113498398 + MLT1L LTR MaLR 281 305 -310 28 0 0 0 chr4 70790264 70790292 -113498370 + AT_rich Low_complexity Low_complexity 1 28 0 670 238 0 6 chr4 70790425 70790597 -113498065 - MER105 DNA DNA -3 201 31 691 242 20 0 chr4 70790652 70790805 -113497857 + MER58B DNA MER1_type 183 338 -3 274 282 94 0 chr4 70790923 70791008 -113497654 + MIR SINE MIR 170 262 0 391 218 128 15 chr4 70791037 70791170 -113497492 - MLT1H LTR MaLR -81 468 321 724 308 35 4 chr4 70791478 70791705 -113496957 - MLT1H LTR MaLR -296 253 20 805 245 25 112 chr4 70792662 70792948 -113495714 - MIR SINE MIR 0 262 2 349 279 68 6 chr4 70793837 70793998 -113494664 + ERVL LTR ERVL 3265 3435 -2329 1633 311 82 26 chr4 70794081 70795109 -113493553 + ERVL LTR ERVL 3569 4762 -1002 2671 141 5 23 chr4 70795109 70795550 -113493112 - Tigger2a DNA MER2_type -1 433 1 1633 311 82 26 chr4 70795550 70796136 -113492526 + ERVL LTR ERVL 4762 5313 -451 398 255 68 0 chr4 70797012 70797124 -113491538 + MIR SINE MIR 29 148 -60 595 207 14 21 chr4 70797168 70797313 -113491349 + MIR SINE MIR 81 224 -38 27 0 0 0 chr4 70798738 70798765 -113489897 + AT_rich Low_complexity Low_complexity 1 27 0 220 170 64 0 chr4 70798841 70798888 -113489774 + L2 LINE L2 3263 3312 -1 7076 16 0 0 chr4 70798973 70799779 -113488883 + L1PA4 LINE L1 5342 6147 -8 187 226 48 48 chr4 70800264 70800326 -113488336 + MIR SINE MIR 38 99 -109 223 284 86 25 chr4 70800548 70800605 -113488057 + MIR3 SINE MIR 101 166 -42 1171 211 113 30 chr4 70800605 70800942 -113487720 + MLT1A1 LTR MaLR 1 365 0 223 284 86 25 chr4 70800942 70800965 -113487697 + MIR3 SINE MIR 166 186 -22 197 81 0 27 chr4 70801511 70801548 -113487114 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 289 295 53 11 chr4 70802074 70802169 -113486493 - L2 LINE L2 -1 3271 3173 705 278 171 72 chr4 70802299 70802662 -113486000 - MLT1L LTR MaLR -3 611 110 255 61 0 0 chr4 70804169 70804202 -113484460 + (CA)n Simple_repeat Simple_repeat 1 33 0 484 359 11 0 chr4 70804926 70805107 -113483555 - L2 LINE L2 -339 2975 2793 4271 63 0 2 chr4 70805130 70805635 -113483027 + L1PA7 LINE L1 5649 6152 -2 975 196 0 11 chr4 70805663 70805847 -113482815 + AluJb SINE Alu 120 301 -11 200 283 38 0 chr4 70805850 70805903 -113482759 - MIR SINE MIR -195 67 13 883 256 135 52 chr4 70806132 70806612 -113482050 - LTR33A LTR ERVL -2 521 2 8040 86 35 2 chr4 70806934 70808022 -113480640 + MER41A-int LTR ERV1 4821 5944 -2 4113 91 7 6 chr4 70808022 70808570 -113480092 + MER41A LTR ERV1 1 549 -5 838 191 27 14 chr4 70808574 70808721 -113479941 - AluJo SINE Alu -162 150 2 1139 226 24 55 chr4 70808919 70809247 -113479415 - MLT1A2 LTR MaLR -9 365 48 430 318 103 75 chr4 70809318 70809717 -113478945 + L2 LINE L2 2808 3217 -55 251 290 0 0 chr4 70810250 70810312 -113478350 + GA-rich Low_complexity Low_complexity 4 65 0 228 298 0 88 chr4 70810392 70810506 -113478156 + MIR SINE MIR 20 123 -85 36534 100 27 11 chr4 70812770 70818702 -113469960 + L1PA5 LINE L1 11 6120 -34 8833 42 2 2 chr4 70818994 70820100 -113468562 - L1P LINE L1 -2697 3449 2344 414 53 0 18 chr4 70820200 70820257 -113468405 - L1P LINE L1 -3769 2377 2322 347 182 26 13 chr4 70822218 70822295 -113466367 + MLT1I LTR MaLR 314 391 -18 343 264 151 13 chr4 70822389 70822548 -113466114 + MLT1I LTR MaLR 130 310 -99 197 315 81 35 chr4 70823366 70823563 -113465099 + L2 LINE L2 2456 2661 -653 34782 34 0 0 chr4 70823766 70828694 -113459968 + L1PA2 LINE L1 1227 6155 0 2253 172 0 22 chr4 70828755 70829122 -113459540 - MLT1A1 LTR MaLR -2 363 5 1127 287 19 50 chr4 70829140 70829562 -113459100 + MLT1I LTR MaLR 1 409 0 30 27 0 0 chr4 70829631 70829668 -113458994 + AT_rich Low_complexity Low_complexity 1 37 0 822 159 0 8 chr4 70829668 70829794 -113458868 + FLAM_C SINE Alu 1 125 -18 28 0 0 0 chr4 70829794 70829822 -113458840 + AT_rich Low_complexity Low_complexity 1 28 0 10595 161 36 13 chr4 70829822 70833312 -113455350 - L1MA5A LINE L1 -19 6920 1477 9142 226 42 27 chr4 70833443 70835934 -113452728 - L1 LINE L1 -2385 4403 5 248 295 64 83 chr4 70836060 70836216 -113452446 + MIR SINE MIR 28 180 -82 2082 224 36 67 chr4 70836221 70836802 -113451860 + MLT1E LTR MaLR 1 563 -30 472 311 91 13 chr4 70837575 70837818 -113450844 - MIR SINE MIR 0 262 3 416 247 0 0 chr4 70837967 70838060 -113450602 - MLT1J LTR MaLR 0 511 419 545 61 37 0 chr4 70838499 70838581 -113450081 - L1PA8 LINE L1 0 6487 6403 12268 85 24 36 chr4 70838684 70841095 -113447567 - L1PA8 LINE L1 -266 6203 3825 * 12906 119 7 53 chr4 70841081 70843943 -113444719 - L1PA8 LINE L1 -3605 2856 6 667 273 87 47 chr4 70843943 70844218 -113444444 + MLT1J LTR MaLR 23 308 -203 2722 198 24 16 chr4 70844808 70845319 -113443343 - MLT2B2 LTR ERVL 0 515 1 901 291 162 14 chr4 70845397 70845892 -113442770 + MLT1L LTR MaLR 38 605 -10 32 57 0 0 chr4 70845958 70846011 -113442651 + AT_rich Low_complexity Low_complexity 1 53 0 528 231 169 44 chr4 70847128 70847266 -113441396 + MER5A DNA MER1_type 10 172 -17 2406 121 19 58 chr4 70847266 70847645 -113441017 - THE1B LTR MaLR 0 364 1 528 231 169 44 chr4 70847645 70847666 -113440996 + MER5A DNA MER1_type 172 189 0 951 241 70 41 chr4 70847848 70848118 -113440544 + LTR16C LTR ERVL 214 491 0 1543 199 48 54 chr4 70848165 70848536 -113440126 - MLT1A2 LTR MaLR -4 370 2 202 226 19 19 chr4 70848750 70848803 -113439859 - MIR SINE MIR -135 73 21 289 270 122 17 chr4 70850329 70850444 -113438218 + LTR16C LTR ERVL 261 387 -104 263 304 5 87 chr4 70850876 70851060 -113437602 + HERVL LTR ERVL 418 586 -5068 892 136 0 5 chr4 70851185 70851334 -113437328 + MSTB LTR MaLR 1 144 -288 2180 95 14 10 chr4 70851339 70851633 -113437029 + AluSq SINE Alu 1 295 -18 2533 90 128 2 chr4 70852751 70853150 -113435512 - L1MA8 LINE L1 -5 6286 5838 22 0 0 0 chr4 70853315 70853337 -113435325 + AT_rich Low_complexity Low_complexity 1 22 0 358 211 79 53 chr4 70854120 70854234 -113434428 - MER33 DNA MER1_type -207 117 1 403 263 0 0 chr4 70854309 70854408 -113434254 + MIR SINE MIR 162 260 -2 670 300 14 29 chr4 70854562 70854772 -113433890 + MIR SINE MIR 36 242 -20 216 241 0 0 chr4 70854774 70854832 -113433830 + (TTA)n Simple_repeat Simple_repeat 2 59 0 375 132 0 15 chr4 70855583 70855651 -113433011 + LTR33A LTR ERVL 455 521 -2 2031 121 6 44 chr4 70855807 70856122 -113432540 - AluSp SINE Alu -10 303 1 1646 225 42 26 chr4 70856977 70857550 -113431112 + L1M4 LINE L1 3517 4098 -2048 2302 205 60 2 chr4 70857563 70858081 -113430581 + L1PBa LINE L1 1 548 -6315 398 255 68 0 chr4 70858991 70859103 -113429559 + MIR SINE MIR 29 148 -60 595 207 14 21 chr4 70859147 70859292 -113429370 + MIR SINE MIR 81 224 -38 27 0 0 0 chr4 70860718 70860745 -113427917 + AT_rich Low_complexity Low_complexity 1 27 0 220 170 64 0 chr4 70860821 70860868 -113427794 + L2 LINE L2 3263 3312 -1 6926 22 1 1 chr4 70860953 70861765 -113426897 + L1PA4 LINE L1 5342 6153 -2 22900 70 9 0 chr4 70861875 70865750 -113422912 + L1PA6 LINE L1 2273 6149 -5 180 0 0 0 chr4 70865752 70865772 -113422890 + (GA)n Simple_repeat Simple_repeat 2 21 0 230 208 0 0 chr4 70868291 70868339 -113420323 - MIR SINE MIR -64 198 151 306 258 43 32 chr4 70868396 70868489 -113420173 - MIR SINE MIR -133 129 36 3826 200 26 51 chr4 70869826 70870820 -113417842 + LTR5 LTR ERVK 1 969 0 443 277 20 0 chr4 70870996 70871097 -113417565 - L2 LINE L2 0 3272 3170 28 0 0 0 chr4 70871133 70871161 -113417501 + AT_rich Low_complexity Low_complexity 1 28 0 355 222 44 11 chr4 70871174 70871264 -113417398 - MER5B DNA MER1_type -78 100 8 228 340 48 0 chr4 70871300 70871403 -113417259 - MIR SINE MIR -26 236 129 482 263 118 43 chr4 70873615 70873801 -113414861 - MIR SINE MIR -11 251 52 354 236 22 17 chr4 70874601 70874779 -113413883 + (TA)n Simple_repeat Simple_repeat 2 180 0 47 33 0 0 chr4 70874856 70874917 -113413745 + AT_rich Low_complexity Low_complexity 1 61 0 466 249 138 36 chr4 70875404 70875594 -113413068 + MLT1L LTR MaLR 237 455 -160 366 42 0 0 chr4 70875594 70875642 -113413020 + (CAAA)n Simple_repeat Simple_repeat 3 50 0 466 249 138 36 chr4 70875642 70875676 -113412986 + MLT1L LTR MaLR 455 484 -131 17371 112 8 5 chr4 70876407 70879872 -113408790 - L1PA7 LINE L1 -10 6459 2988 1240 114 0 0 chr4 70879872 70880082 -113408580 - L1P LINE L1 -2704 3442 3233 4536 119 0 1 chr4 70880088 70880809 -113407853 - L1PA7 LINE L1 -3477 2984 2265 * 40208 39 21 1 chr4 70880808 70886836 -113401826 + L1PA2 LINE L1 1 6154 -1 5984 169 22 31 chr4 70886834 70888129 -113400533 - L1PA7 LINE L1 -4179 2282 1000 * 291 73 0 0 chr4 70888122 70888163 -113400499 - L1PA7 LINE L1 -5696 765 725 * 1057 149 32 5 chr4 70888378 70888566 -113400096 - MER20 DNA MER1_type -1 218 26 436 330 50 50 chr4 70888668 70888926 -113399736 - MIR SINE MIR 0 262 5 238 167 0 0 chr4 70889320 70889362 -113399300 - MSTA LTR MaLR 0 426 385 1884 130 0 8 chr4 70889362 70889624 -113399038 + AluSx SINE Alu 1 260 -52 1827 117 131 22 chr4 70889639 70889999 -113398663 - MSTA LTR MaLR -29 399 1 1780 203 80 51 chr4 70890106 70890595 -113398067 - MLT1D LTR MaLR 0 505 3 200 163 23 0 chr4 70891010 70891053 -113397609 + (TATATG)n Simple_repeat Simple_repeat 1 44 0 195 0 86 0 chr4 70891066 70891101 -113397561 + T-rich Low_complexity Low_complexity 2 39 0 13753 201 57 12 chr4 70891101 70895049 -113393613 - L1PB1 LINE L1 -10 6857 2463 2298 108 0 7 chr4 70895049 70895355 -113393307 - AluY SINE Alu -7 304 1 13753 201 57 12 chr4 70895355 70897929 -113390733 - L1PB1 LINE L1 -4404 2463 6 5451 186 20 5 chr4 70897979 70899017 -113389645 + MSTB-int LTR MaLR 591 1644 -7 2341 188 9 21 chr4 70899022 70899453 -113389209 + MSTB LTR MaLR 1 426 0 2030 257 59 55 chr4 70900573 70901659 -113387003 + L1MC4 LINE L1 6950 8039 -3 869 37 0 0 chr4 70904038 70904146 -113384516 - L1PA4 LINE L1 -276 5879 5772 2213 53 14 3 chr4 70904146 70904424 -113384238 + L1PA4 LINE L1 5868 6155 0 1035 206 19 12 chr4 70904449 70904706 -113383956 + L1 LINE L1 4891 5149 -997 225 0 0 0 chr4 70904711 70904736 -113383926 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 292 173 0 0 chr4 70904890 70904942 -113383720 - LTR67 LTR ERVL -26 531 480 1814 237 66 30 chr4 70904943 70905609 -113383053 + L1MC4a LINE L1 5357 6046 -1762 377 208 0 69 chr4 70906566 70906667 -113381995 - LTR33 LTR ERVL -427 94 1 238 250 0 0 chr4 70906882 70906934 -113381728 + (TCCA)n Simple_repeat Simple_repeat 1 52 0 297 374 35 0 chr4 70906971 70907086 -113381576 - L2 LINE L2 -38 3234 3116 302 276 25 116 chr4 70907195 70907394 -113381268 - MER91A DNA MER1_type -15 181 1 2071 206 42 0 chr4 70907866 70908363 -113380299 - Tigger7 DNA MER2_type -2 2485 1 691 264 136 4 chr4 70909567 70909817 -113378845 - L2 LINE L2 -10 3303 3021 622 305 51 0 chr4 70909886 70910083 -113378579 - MIR SINE MIR -54 208 2 369 291 122 26 chr4 70910089 70910347 -113378315 - L2 LINE L2 -249 3023 2741 286 196 18 0 chr4 70910355 70910411 -113378251 + MER115 DNA AcHobo 1 57 -636 378 0 0 0 chr4 70910415 70910457 -113378205 + (CA)n Simple_repeat Simple_repeat 2 43 0 2319 206 45 45 chr4 70910480 70910664 -113377998 + Zaphod DNA AcHobo 3290 3473 -558 797 175 0 0 chr4 70910664 70910790 -113377872 + FLAM_C SINE Alu 1 126 -7 2319 206 45 45 chr4 70910790 70911200 -113377462 + Zaphod DNA AcHobo 3473 3887 -144 7268 43 8 2 chr4 70911200 70912420 -113376242 - L1PA5 LINE L1 -2 6152 4926 2319 206 45 45 chr4 70912420 70912565 -113376097 + Zaphod DNA AcHobo 3886 4030 -1 193 211 0 0 chr4 70912565 70912603 -113376059 - L2 LINE L2 -583 2731 2694 341 286 112 6 chr4 70912852 70913013 -113375649 - MER5B DNA MER1_type 0 178 1 442 340 20 24 chr4 70913930 70914224 -113374438 + L2 LINE L2 2586 2878 -436 246 324 0 65 chr4 70914227 70914335 -113374327 + MER5A DNA MER1_type 14 114 -75 2018 153 0 0 chr4 70914585 70914880 -113373782 - AluSx SINE Alu -17 295 1 325 313 46 15 chr4 70914976 70915107 -113373555 + MIR SINE MIR 20 154 -108 326 276 0 0 chr4 70915255 70915353 -113373309 + L1ME2 LINE L1 2920 3017 -3129 * 2758 195 28 10 chr4 70915346 70916171 -113372491 + L1ME2 LINE L1 5148 5985 -179 605 224 14 7 chr4 70916180 70916327 -113372335 + L1MA10 LINE L1 6175 6322 -12 7569 28 1 0 chr4 70916417 70917846 -113370816 - L1PA3 LINE L1 -1 6154 4722 431 240 0 10 chr4 70917856 70917952 -113370710 + MIR SINE MIR 57 151 -111 240 161 39 39 chr4 70918849 70919004 -113369658 + (TA)n Simple_repeat Simple_repeat 2 156 0 225 135 53 53 chr4 70919025 70919195 -113369467 + (TTATA)n Simple_repeat Simple_repeat 5 174 0 36 70 0 0 chr4 70919203 70919274 -113369388 + AT_rich Low_complexity Low_complexity 1 71 0 2315 129 0 0 chr4 70919278 70919641 -113369021 - L1P LINE L1 -5783 363 1 28 0 0 0 chr4 70919741 70919769 -113368893 + AT_rich Low_complexity Low_complexity 1 28 0 2786 237 220 18 chr4 70919816 70921013 -113367649 - L1MC4 LINE L1 -146 7896 6459 402 302 7 20 chr4 70921015 70921164 -113367498 + L2 LINE L2 2828 2974 -339 489 299 9 55 chr4 70921668 70921874 -113366788 + L2 LINE L2 3099 3296 -17 186 43 0 0 chr4 70921874 70921897 -113366765 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 186 43 0 0 chr4 70921951 70921974 -113366688 + (TTA)n Simple_repeat Simple_repeat 1 23 0 372 307 198 10 chr4 70922942 70923134 -113365528 + MIR SINE MIR 19 246 -16 205 254 16 48 chr4 70923454 70923517 -113365145 - L2 LINE L2 -339 2975 2915 240 35 0 0 chr4 70926194 70926223 -113362439 + (CAATT)n Simple_repeat Simple_repeat 2 30 0 491 310 13 29 chr4 70926325 70926500 -113362162 + MIR SINE MIR 33 203 -59 195 311 172 33 chr4 70926582 70926704 -113361958 - L2 LINE L2 -2 3270 3132 234 138 185 0 chr4 70926769 70926834 -113361828 - MLT1L LTR MaLR -4 611 535 942 173 19 6 chr4 70926842 70927004 -113361658 - AluJo SINE Alu -25 287 124 925 243 94 43 chr4 70927409 70927825 -113360837 - LTR68 LTR ERV1 -303 437 1 2270 277 70 32 chr4 70927825 70929057 -113359605 + L1MEc LINE L1 255 1343 -4872 1885 188 14 3 chr4 70929194 70929556 -113359106 + MER47A DNA MER2_type 1 366 0 42 0 0 0 chr4 70929749 70929791 -113358871 + AT_rich Low_complexity Low_complexity 1 42 0 28338 111 9 17 chr4 70929904 70935657 -113353005 - L1PA7 LINE L1 0 6469 748 2248 119 19 11 chr4 70935671 70936041 -113352621 - L1MA2 LINE L1 0 6304 5932 41261 48 3 3 chr4 70936240 70942399 -113346263 + L1PA4 LINE L1 1 6152 -3 853 266 25 52 chr4 70943978 70944264 -113344398 - L2 LINE L2 -706 2608 2331 583 306 35 5 chr4 70944267 70944466 -113344196 + L2 LINE L2 2286 2490 -824 22 35 0 0 chr4 70947823 70947852 -113340810 + AT_rich Low_complexity Low_complexity 1 29 0 2101 148 0 3 chr4 70947894 70948205 -113340457 + AluSx SINE Alu 1 310 -2 1584 215 54 87 chr4 70948881 70949476 -113339186 + L1MCb LINE L1 413 987 -5058 483 131 101 0 chr4 70949539 70949638 -113339024 + L1MCb LINE L1 988 1096 -5468 478 161 25 0 chr4 70949621 70949702 -113338960 - L1MDa LINE L1 -6441 99 17 * 421 299 44 87 chr4 70949701 70949874 -113338788 - HAL1 LINE L1 -1533 974 795 * 1952 136 0 4 chr4 70949874 70950202 -113338460 + AluSc SINE Alu 2 328 0 421 299 44 87 chr4 70950202 70950522 -113338140 - HAL1 LINE L1 -1712 795 501 1630 243 15 55 chr4 70950640 70951166 -113337496 + LTR40a LTR ERVL 1 505 -14 1005 135 0 0 chr4 70952902 70953058 -113335604 - L1PA13 LINE L1 -11 6152 5997 875 201 82 119 chr4 70953503 70953882 -113334780 + MLT1A1 LTR MaLR 1 365 0 208 193 0 35 chr4 70953995 70954052 -113334610 + GA-rich Low_complexity Low_complexity 1 55 0 212 258 258 0 chr4 70954580 70954677 -113333985 - MIR SINE MIR -24 238 117 2485 103 0 0 chr4 70955332 70955642 -113333020 - AluSx SINE Alu -2 310 1 2938 167 14 2 chr4 70956652 70957295 -113331367 + L1MB8 LINE L1 5174 5825 -353 1455 148 56 20 chr4 70957295 70957545 -113331117 + AluJo SINE Alu 1 259 -53 26903 45 36 2 chr4 70959405 70962989 -113325673 + L1P LINE L1 1 3706 -2440 13527 146 56 8 chr4 70963090 70968790 -113319872 + L1PB1 LINE L1 498 6518 -349 375 23 0 0 chr4 70968790 70968834 -113319828 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 13527 146 56 8 chr4 70968834 70969200 -113319462 + L1PB1 LINE L1 6518 6865 -2 253 218 0 0 chr4 70969412 70969467 -113319195 + L1P LINE L1 4103 4157 -1989 356 164 0 16 chr4 70969467 70969528 -113319134 - AluJo SINE Alu -135 167 108 356 195 26 26 chr4 70969529 70969642 -113319020 + L1ME LINE L1 4151 4263 -1883 269 200 0 0 chr4 70969653 70969698 -113318964 + Alu SINE Alu 1 45 -257 1482 160 29 4 chr4 70969706 70969950 -113318712 + AluJb SINE Alu 12 261 -51 718 161 0 92 chr4 70969956 70970130 -113318532 + Tigger5 DNA MER2_type 2112 2269 -54 40917 34 21 1 chr4 70970146 70976162 -113312500 - L1PA2 LINE L1 -4 6151 13 424 181 0 0 chr4 70976182 70976254 -113312408 + Tigger5 DNA MER2_type 2252 2323 0 1369 228 77 2 chr4 70976259 70976689 -113311973 + L1ME LINE L1 4485 4946 -1200 1344 199 32 4 chr4 70976743 70976994 -113311668 - AluJb SINE Alu -46 266 9 1247 190 28 14 chr4 70977021 70977538 -113311124 + L1ME LINE L1 4992 5510 -732 2231 250 36 27 chr4 70977777 70978409 -113310253 - MER21B LTR ERV1 -204 659 22 502 78 62 8 chr4 70978462 70978590 -113310072 + (TAGA)n Simple_repeat Simple_repeat 4 138 0 519 276 0 7 chr4 70978607 70978752 -113309910 + L1ME LINE L1 5588 5731 -439 262 232 49 0 chr4 70978953 70979035 -113309627 + L1MC4 LINE L1 6618 6703 -1339 484 351 34 14 chr4 70979187 70979480 -113309182 + L1M4 LINE L1 2248 2546 -3600 426 252 28 89 chr4 70979551 70979765 -113308897 - L1ME2 LINE L1 -1 6163 5963 408 109 0 0 chr4 70979800 70979864 -113308798 - L1MA5A LINE L1 -6 6291 6228 1555 194 44 9 chr4 70979919 70980239 -113308423 - MLT1A1 LTR MaLR 0 365 35 1968 84 7 42 chr4 70980239 70980526 -113308136 - AluY SINE Alu -14 297 21 337 80 0 20 chr4 70980562 70980612 -113308050 - MLT1A1 LTR MaLR -325 49 1 4329 166 30 16 chr4 70981035 70982569 -113306093 + L1MA4 LINE L1 4623 6167 -133 1226 164 40 0 chr4 70982575 70982776 -113305886 + AluJb SINE Alu 87 295 -17 420 198 94 0 chr4 70982776 70982882 -113305780 + L1MA4 LINE L1 6179 6294 -6 742 172 0 16 chr4 70983529 70983651 -113305011 + AluJb SINE Alu 167 286 -26 1322 174 138 40 chr4 70983692 70983968 -113304694 + AluJo SINE Alu 1 303 -9 2308 94 19 3 chr4 70984217 70984525 -113304137 + AluSq SINE Alu 1 313 0 1463 226 58 25 chr4 70984539 70984973 -113303689 + L1ME3 LINE L1 5715 6162 0 1205 86 0 0 chr4 70984990 70985142 -113303520 + AluSg/x SINE Alu 142 293 -17 684 223 135 35 chr4 70985568 70985945 -113302717 + L2 LINE L2 2776 3178 -135 1137 86 6 31 chr4 70986076 70986238 -113302424 - AluY SINE Alu -153 158 1 262 199 140 93 chr4 70986316 70986459 -113302203 + L1MC4a LINE L1 6435 6575 -1233 1446 256 53 43 chr4 70986483 70986567 -113302095 + L1M4 LINE L1 2944 3026 -3120 189 0 0 0 chr4 70986567 70986588 -113302074 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1446 256 53 43 chr4 70986588 70986880 -113301782 + L1M4 LINE L1 3026 3313 -2833 2239 125 0 0 chr4 70986880 70987183 -113301479 + AluSx SINE Alu 1 303 -9 1446 256 53 43 chr4 70987183 70987336 -113301326 + L1M4 LINE L1 3313 3463 -2683 2362 71 20 3 chr4 70987336 70987632 -113301030 + AluY SINE Alu 1 301 -10 2534 53 3 0 chr4 70987641 70987941 -113300721 + AluSp SINE Alu 1 301 -12 1446 256 53 43 chr4 70987941 70988149 -113300513 + L1M4 LINE L1 3470 3701 -2445 950 214 178 41 chr4 70988183 70988576 -113300086 + L1MC4 LINE L1 6461 6907 -1135 1075 229 57 39 chr4 70988679 70989138 -113299524 + L1MDa LINE L1 1734 2200 -4340 368 241 191 5 chr4 70989667 70989887 -113298775 + L1MDa LINE L1 2344 2604 -4117 1456 236 43 94 chr4 70989925 70990477 -113298185 + MLT1E2 LTR MaLR 59 583 -42 544 129 10 50 chr4 70990477 70990578 -113298084 - Tigger7 DNA MER2_type -1 2586 2490 1321 211 23 0 chr4 70990581 70990837 -113297825 - Tigger7 DNA MER2_type -2223 264 3 1324 206 35 96 chr4 70990862 70991197 -113297465 + L1MDa LINE L1 2547 2901 -3639 1374 177 22 73 chr4 70991197 70991514 -113297148 + AluJo SINE Alu 1 301 -11 1324 206 35 96 chr4 70991514 70991541 -113297121 + L1MDa LINE L1 2901 2928 -3612 788 161 0 0 chr4 70991541 70991665 -113296997 + FLAM_C SINE Alu 1 124 -9 1324 206 35 96 chr4 70991665 70991938 -113296724 + L1MDa LINE L1 2928 3144 -3396 2050 116 46 0 chr4 70992092 70992376 -113296286 - AluSx SINE Alu -15 297 1 401 263 40 0 chr4 70992440 70992539 -113296123 + MER69 DNA AcHobo 1 103 -1123 2444 70 0 7 chr4 70992676 70992975 -113295687 - AluSp SINE Alu -16 297 1 22 0 0 0 chr4 70995225 70995247 -113293415 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 70996521 70996546 -113292116 + AT_rich Low_complexity Low_complexity 1 25 0 904 142 0 0 chr4 70996546 70996673 -113291989 - FLAM_C SINE Alu -16 127 1 281 312 92 9 chr4 70996946 70997055 -113291607 - MIR SINE MIR -86 176 59 318 213 25 12 chr4 70997220 70997300 -113291362 - MLT1K LTR MaLR -340 248 168 336 238 25 0 chr4 70997513 70997593 -113291069 - L1ME LINE L1 -517 5604 5523 21 0 0 0 chr4 70997706 70997727 -113290935 + AT_rich Low_complexity Low_complexity 1 21 0 2442 93 0 0 chr4 70997947 70998259 -113290403 - AluSx SINE Alu 0 312 1 1617 162 56 5 chr4 71000407 71000783 -113287879 - L1 LINE L1 -2549 3597 3203 1101 213 63 33 chr4 71000800 71001134 -113287528 + MER2 DNA MER2_type 1 344 0 2166 98 25 0 chr4 71001662 71001947 -113286715 - AluSq SINE Alu -21 292 1 1675 130 55 33 chr4 71002001 71002363 -113286299 + L1 LINE L1 3347 3716 -2430 407 216 35 26 chr4 71004919 71005035 -113283627 - MIR3 SINE MIR -1 207 91 437 250 107 51 chr4 71005409 71005652 -113283010 + MIR SINE MIR 3 254 -8 589 235 17 0 chr4 71006490 71006609 -113282053 + MIR SINE MIR 2 122 -140 2877 13 0 0 chr4 71006866 71007182 -113281480 + AluYb8 SINE Alu 1 316 -2 1096 290 131 11 chr4 71007805 71008325 -113280337 + MLT1G1 LTR MaLR 1 582 -13 1427 217 139 41 chr4 71008594 71008919 -113279743 - L1MC5 LINE L1 -36 7925 7633 807 141 259 23 chr4 71008919 71009181 -113279481 - MER33 DNA MER1_type 0 324 1 1427 217 139 41 chr4 71009181 71009612 -113279050 - L1MC5 LINE L1 -328 7633 7095 308 191 24 48 chr4 71009758 71009842 -113278820 - L1ME4a LINE L1 0 6121 6040 260 275 53 0 chr4 71010103 71010234 -113278428 - L1ME4a LINE L1 -201 5920 5783 578 240 85 55 chr4 71010425 71010625 -113278037 - L2 LINE L2 -1 3312 3107 4024 144 31 39 chr4 71010888 71011700 -113276962 + L1MB7 LINE L1 5380 6184 0 599 241 30 0 chr4 71011724 71011890 -113276772 + L1MC5 LINE L1 7729 7899 -62 690 270 74 0 chr4 71011989 71012178 -113276484 + MIR SINE MIR 15 217 -45 4075 107 13 36 chr4 71012197 71012900 -113275762 - L1PA8 LINE L1 -1125 5021 4335 * 5073 58 1 0 chr4 71012895 71013806 -113274856 + L1PA8 LINE L1 4996 5907 -265 1647 107 66 83 chr4 71013923 71014212 -113274450 - AluJb SINE Alu -28 284 1 594 253 92 4 chr4 71014221 71014482 -113274180 + L1M4 LINE L1 2246 2529 -3617 1764 150 175 39 chr4 71014597 71014655 -113274007 + MLT1D LTR MaLR 12 61 -444 2071 133 11 48 chr4 71014655 71015031 -113273631 + THE1B LTR MaLR 1 362 -2 1764 150 175 39 chr4 71015031 71015406 -113273256 + MLT1D LTR MaLR 61 504 -1 327 254 85 59 chr4 71016358 71016476 -113272186 - L2 LINE L2 -3 3310 3190 267 264 148 32 chr4 71016995 71017181 -113271481 + MIR SINE MIR 15 218 -44 291 266 9 18 chr4 71018574 71018683 -113269979 + L1ME LINE L1 5706 5813 -357 192 77 0 0 chr4 71018820 71018846 -113269816 + (TG)n Simple_repeat Simple_repeat 2 27 0 248 319 21 0 chr4 71018931 71019017 -113269645 + GA-rich Low_complexity Low_complexity 2 150 0 2159 110 10 3 chr4 71019055 71019356 -113269306 + AluSx SINE Alu 1 303 -9 813 212 22 16 chr4 71019839 71020023 -113268639 - MIR SINE MIR -3 259 75 222 91 0 0 chr4 71020096 71020129 -113268533 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 294 148 16 49 chr4 71020735 71020796 -113267866 - MLT1K LTR MaLR -109 479 421 368 312 164 17 chr4 71020899 71021130 -113267532 - MLT1K LTR MaLR -315 273 9 772 200 93 0 chr4 71021473 71021678 -113266984 - L1MC5 LINE L1 -36 7925 7702 525 116 0 23 chr4 71021678 71021764 -113266898 - AluS SINE Alu -3 309 226 1834 132 0 32 chr4 71021764 71022044 -113266618 - AluSx SINE Alu -41 271 1 369 162 0 0 chr4 71022118 71022192 -113266470 - L1MC5 LINE L1 -412 7549 7476 1018 224 69 17 chr4 71022309 71022541 -113266121 + MIR SINE MIR 7 250 -12 248 284 54 0 chr4 71022534 71022608 -113266054 - MIR SINE MIR -71 137 60 * 180 333 120 8 chr4 71022701 71022818 -113265844 + MIR3 SINE MIR 47 176 -32 1898 197 7 19 chr4 71023941 71024353 -113264309 - MLT2D LTR ERVL -7 407 1 452 62 0 0 chr4 71024628 71024693 -113263969 + L1MB3 LINE L1 6117 6181 -2 3117 155 28 38 chr4 71024785 71025392 -113263270 - MER6A DNA MER2_type -3 602 2 1638 126 112 25 chr4 71025641 71025919 -113262743 - AluJb SINE Alu -10 302 1 32 0 0 0 chr4 71026019 71026051 -113262611 + AT_rich Low_complexity Low_complexity 1 32 0 2193 112 0 20 chr4 71026052 71026355 -113262307 + AluSx SINE Alu 1 297 -15 1437 256 112 36 chr4 71026404 71026955 -113261707 + L2 LINE L2 2418 3069 -244 1918 154 7 23 chr4 71026955 71027261 -113261401 - AluJb SINE Alu -7 305 5 1437 256 112 36 chr4 71027261 71027521 -113261141 + L2 LINE L2 3069 3308 -5 231 125 0 0 chr4 71028291 71028331 -113260331 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 2391 132 55 11 chr4 71028349 71028782 -113259880 - Tigger3(Golem) DNA MER2_type -1 3028 2577 644 238 76 0 chr4 71029401 71029573 -113259089 + LTR16A LTR ERVL 27 211 -239 943 136 73 28 chr4 71029581 71029758 -113258904 + THE1B LTR MaLR 1 185 -179 4461 37 17 2 chr4 71029758 71030643 -113258019 - L1PA5 LINE L1 -458 5696 4801 3839 35 2 0 chr4 71030643 71031099 -113257563 + L1PA5 LINE L1 5693 6150 -4 1192 109 10 26 chr4 71031127 71031319 -113257343 + THE1B LTR MaLR 176 364 0 12049 83 8 0 chr4 71031319 71032887 -113255775 + THE1B-int LTR MaLR 1 1580 0 2141 115 18 87 chr4 71032887 71033278 -113255384 + THE1B LTR MaLR 1 364 0 2679 175 62 22 chr4 71033318 71033855 -113254807 - MER68 LTR ERV1 0 562 5 2292 268 50 26 chr4 71033898 71034728 -113253934 + HERV16 LTR ERVL 2307 3196 -1902 29 47 0 0 chr4 71034905 71034948 -113253714 + AT_rich Low_complexity Low_complexity 1 43 0 2220 101 7 14 chr4 71035800 71036096 -113252566 - AluSx SINE Alu -18 294 1 21 0 0 0 chr4 71038518 71038539 -113250123 + AT_rich Low_complexity Low_complexity 1 21 0 1569 252 66 6 chr4 71038543 71039058 -113249604 + L1MEc LINE L1 32 577 -5819 2677 258 75 40 chr4 71039089 71039816 -113248846 + L1MEc LINE L1 674 1471 -4925 1836 147 10 16 chr4 71039816 71040122 -113248540 + AluJb SINE Alu 7 310 -2 2677 258 75 40 chr4 71040122 71040720 -113247942 + L1MEc LINE L1 1471 2046 -4350 6023 132 16 16 chr4 71040728 71041034 -113247628 + L1MA3 LINE L1 4782 5087 -1218 2053 129 19 10 chr4 71041034 71041343 -113247319 - AluJb SINE Alu 0 312 1 6023 132 16 16 chr4 71041343 71042560 -113246102 + L1MA3 LINE L1 5087 6305 0 310 279 93 21 chr4 71043875 71044015 -113244647 + L1ME4a LINE L1 5304 5453 -717 396 313 76 31 chr4 71044069 71044360 -113244302 + L1ME4a LINE L1 5516 5819 -302 990 224 92 69 chr4 71044375 71044582 -113244080 + L1ME3A LINE L1 5485 5686 -484 7692 23 0 0 chr4 71044582 71045537 -113243125 + L1PA2 LINE L1 5201 6155 0 990 224 92 69 chr4 71045537 71045763 -113242899 + L1ME3A LINE L1 5686 5928 -242 542 264 49 6 chr4 71045786 71045949 -113242713 + L1ME3A LINE L1 5996 6165 -5 352 294 135 31 chr4 71045983 71046146 -113242516 + MER5A DNA MER1_type 8 187 -2 1050 220 26 13 chr4 71046177 71046404 -113242258 + MIR SINE MIR 12 241 -21 333 257 151 0 chr4 71046441 71046593 -113242069 + L1ME4a LINE L1 5903 6077 -44 2375 87 0 0 chr4 71047549 71047848 -113240814 + AluSg1 SINE Alu 1 299 -10 21 36 0 0 chr4 71048097 71048125 -113240537 + AT_rich Low_complexity Low_complexity 1 28 0 221 296 56 0 chr4 71048516 71048570 -113240092 + L2 LINE L2 3213 3269 -3 397 262 39 139 chr4 71049723 71050032 -113238630 + L2 LINE L2 2990 3267 -5 264 358 118 22 chr4 71051306 71051535 -113237127 + MIR SINE MIR 1 251 -11 2232 232 142 48 chr4 71051970 71052849 -113235813 - L2 LINE L2 -1290 2024 1063 221 267 67 0 chr4 71052856 71052931 -113235731 - L2 LINE L2 -2413 901 822 4102 180 155 31 chr4 71052941 71054242 -113234420 + Charlie1 DNA MER1_type 5 2761 0 286 216 135 0 chr4 71054243 71054317 -113234345 - L2 LINE L2 -2506 808 725 234 135 58 19 chr4 71054685 71054737 -113233925 - MLT1J LTR MaLR -389 57 4 2756 79 3 3 chr4 71054929 71055284 -113233378 - THE1A LTR MaLR 0 355 1 415 231 46 30 chr4 71056101 71056256 -113232406 - L1ME1 LINE L1 -1 6177 6018 781 254 115 4 chr4 71056789 71057041 -113231621 - L1ME3A LINE L1 -8 6162 5883 768 280 104 29 chr4 71057033 71058356 -113230306 - L1MEc LINE L1 -3654 2990 1479 * 246 277 9 36 chr4 71058422 71058534 -113230128 - L1MEc LINE L1 -5335 1207 1099 239 258 0 0 chr4 71058715 71058777 -113229885 + T-rich Low_complexity Low_complexity 1 62 0 2086 154 12 6 chr4 71059528 71059860 -113228802 + MER1B DNA MER1_type 4 337 0 3009 169 70 113 chr4 71059931 71060181 -113228481 - Looper DNA T2_type 0 1558 1299 2269 149 50 28 chr4 71060181 71060603 -113228059 - Tigger2a DNA MER2_type -3 431 1 3009 169 70 113 chr4 71060603 71061143 -113227519 - Looper DNA T2_type -259 1299 812 2212 101 10 19 chr4 71061143 71061451 -113227211 - AluSg SINE Alu -5 305 1 3009 169 70 113 chr4 71061451 71061596 -113227066 - Looper DNA T2_type -746 812 662 1038 215 9 36 chr4 71061596 71061815 -113226847 + MER20 DNA MER1_type 1 213 -6 2122 146 134 34 chr4 71061820 71062307 -113226355 - Looper DNA T2_type -888 670 117 2410 80 0 0 chr4 71062307 71062608 -113226054 - AluY SINE Alu -10 301 1 2122 146 134 34 chr4 71062608 71062687 -113225975 - Looper DNA T2_type -1441 117 47 2147 89 25 0 chr4 71062782 71063064 -113225598 - AluSp SINE Alu -18 295 7 1176 180 130 11 chr4 71063617 71063994 -113224668 - L1MEc LINE L1 -2625 3757 3336 419 254 62 54 chr4 71064014 71064295 -113224367 - L1MEc LINE L1 -4739 1643 1263 290 67 0 0 chr4 71064303 71064348 -113224314 - MER57A LTR ERV1 0 403 359 1887 162 30 22 chr4 71064368 71064738 -113223924 - MER57A LTR ERV1 -23 380 8 2659 245 69 11 chr4 71064739 71065854 -113222808 - L1MEc LINE L1 -5152 1411 206 358 299 49 5 chr4 71065868 71066052 -113222610 + L1MC4 LINE L1 4613 4804 -1342 296 274 216 7 chr4 71066185 71066338 -113222324 - MLT1J LTR MaLR 0 511 327 327 222 77 86 chr4 71066480 71066597 -113222065 - MLT1J LTR MaLR -387 124 9 307 258 61 18 chr4 71066605 71066768 -113221894 + L1MC4 LINE L1 4972 5141 -1005 988 261 148 16 chr4 71066962 71067521 -113221141 + L1MC4 LINE L1 5298 5930 -1878 21 57 0 0 chr4 71067869 71067904 -113220758 + AT_rich Low_complexity Low_complexity 1 35 0 260 330 104 17 chr4 71069053 71069174 -113219488 - MIR SINE MIR -64 144 38 184 358 11 11 chr4 71069318 71069413 -113219249 + L2 LINE L2 2422 2516 -798 693 268 74 13 chr4 71069417 71069648 -113219014 + MIR SINE MIR 18 262 0 222 246 53 0 chr4 71069745 71069802 -113218860 + MIR SINE MIR 88 147 -61 27 0 0 0 chr4 71069953 71069980 -113218682 + AT_rich Low_complexity Low_complexity 1 27 0 212 353 60 15 chr4 71070969 71071102 -113217560 + L3b LINE CR1 1228 1366 -217 24 32 0 0 chr4 71071721 71071752 -113216910 + AT_rich Low_complexity Low_complexity 1 31 0 2269 155 28 11 chr4 71071902 71072323 -113216339 - MER57A-int LTR ERV1 -1290 6247 5825 6288 144 42 22 chr4 71072650 71072934 -113215728 - MER57A-int LTR ERV1 -1717 5820 5543 2211 92 7 10 chr4 71072934 71073237 -113215425 - AluSq SINE Alu -11 302 1 6288 144 42 22 chr4 71073237 71074112 -113214550 - MER57A-int LTR ERV1 -1994 5543 2720 530 141 45 0 chr4 71074115 71074271 -113214391 + (TA)n Simple_repeat Simple_repeat 2 164 0 303 250 0 52 chr4 71074278 71074374 -113214288 + L1MC4 LINE L1 6614 6704 -1338 477 148 48 0 chr4 71074378 71074590 -113214072 + (TA)n Simple_repeat Simple_repeat 1 222 0 1193 183 79 60 chr4 71074590 71074956 -113213706 - MER57A-int LTR ERV1 -2256 4075 3703 1897 113 0 0 chr4 71075041 71075289 -113213373 - AluSg SINE Alu -21 289 42 897 200 53 18 chr4 71075324 71075697 -113212965 - MER57A-int LTR ERV1 -2917 2206 1759 522 256 17 0 chr4 71075851 71075968 -113212694 - MER57A-int LTR ERV1 -2867 3464 3346 424 168 109 20 chr4 71076017 71076118 -113212544 - MER57A-int LTR ERV1 -2991 3340 3231 289 214 17 66 chr4 71076183 71076301 -113212361 - MER57A-int LTR ERV1 -3732 1391 1296 * 479 174 29 16 chr4 71076289 71076426 -113212236 - MER57A-int LTR ERV1 -3691 1949 1096 329 136 0 17 chr4 71076580 71076639 -113212023 - MER34C LTR ERV1 -373 212 155 986 122 41 51 chr4 71076950 71077146 -113211516 - MER57A-int LTR ERV1 -6695 842 649 383 135 29 135 chr4 71077177 71077281 -113211381 - MER57A-int LTR ERV1 -6867 670 578 2468 212 46 39 chr4 71077320 71077886 -113210776 - MER57A-int LTR ERV1 -6965 572 3 524 178 59 0 chr4 71077888 71077989 -113210673 - MER57A LTR ERV1 0 403 297 1027 165 53 10 chr4 71078414 71078620 -113210042 - L1MB8 LINE L1 -5 6173 5959 23 54 0 0 chr4 71078631 71078668 -113209994 + AT_rich Low_complexity Low_complexity 1 37 0 568 224 16 16 chr4 71080250 71080375 -113208287 - L2 LINE L2 0 3313 3189 1545 169 66 7 chr4 71081032 71081304 -113207358 - AluJo SINE Alu -22 290 3 303 326 131 17 chr4 71081446 71081621 -113207041 - MIR SINE MIR -60 202 8 256 222 0 16 chr4 71082076 71082139 -113206523 - L1ME4a LINE L1 -69 6052 5991 4883 152 61 14 chr4 71082760 71084376 -113204286 - L1MA7 LINE L1 -7 6284 4592 2477 155 25 0 chr4 71084376 71084777 -113203885 - LTR57 LTR ERVL 0 411 1 4883 152 61 14 chr4 71084777 71084830 -113203832 - L1MA7 LINE L1 -1699 4592 4543 1277 141 106 48 chr4 71084833 71085163 -113203499 + MSTA LTR MaLR 4 378 -50 1358 143 0 0 chr4 71085265 71085482 -113203180 + L1PA8 LINE L1 5942 6158 -14 221 56 0 28 chr4 71085780 71085816 -113202846 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1808 155 54 35 chr4 71086508 71086876 -113201786 - THE1C LTR MaLR 0 375 1 372 200 0 0 chr4 71087065 71087150 -113201512 + CT-rich Low_complexity Low_complexity 3 87 0 898 291 82 34 chr4 71087374 71087970 -113200692 - L2 LINE L2 0 3313 2686 2161 181 85 25 chr4 71088046 71088483 -113200179 - MER21B LTR ERV1 -112 751 289 486 268 41 0 chr4 71088494 71088617 -113200045 - MER21B LTR ERV1 -691 172 45 398 229 0 0 chr4 71088616 71088686 -113199976 - MER21B LTR ERV1 -774 89 20 * 253 234 16 16 chr4 71088721 71088785 -113199877 - MER21B LTR ERV1 -799 64 1 289 272 22 88 chr4 71088789 71088827 -113199835 - L2 LINE L2 -639 2675 2636 2017 125 3 3 chr4 71088827 71089142 -113199520 + AluSx SINE Alu 1 312 0 289 272 22 88 chr4 71089142 71089239 -113199423 - L2 LINE L2 -678 2636 2549 341 283 196 6 chr4 71089682 71089905 -113198757 + L2 LINE L2 2794 3046 -267 4092 153 86 86 chr4 71089905 71090412 -113198250 + MER4B-int LTR ERV1 4092 4598 -1585 1787 175 0 0 chr4 71090412 71090731 -113197931 + AluSq SINE Alu 1 319 0 4092 153 86 86 chr4 71090731 71090926 -113197736 + MER4B-int LTR ERV1 4598 4792 -1391 7562 31 1 0 chr4 71090926 71091962 -113196700 + L1PA3 LINE L1 5119 6155 0 4092 153 86 86 chr4 71091962 71092361 -113196301 + MER4B-int LTR ERV1 4792 5440 -743 1137 195 4 101 chr4 71092493 71092933 -113195729 + MER4B-int LTR ERV1 4629 6081 -257 640 228 82 6 chr4 71093177 71093348 -113195314 + LTR47A LTR ERVL 261 444 -8 479 243 7 7 chr4 71093648 71093788 -113194874 - L1M4 LINE L1 -3126 3020 2881 1288 39 0 0 chr4 71093920 71094073 -113194589 + L1PA3 LINE L1 6000 6152 -3 612 25 0 0 chr4 71094499 71094578 -113194084 - AluY SINE Alu -231 79 1 4237 137 20 10 chr4 71094589 71095283 -113193379 - Tigger3b DNA MER2_type -530 701 1 186 357 8 48 chr4 71095300 71095426 -113193236 + MIR SINE MIR 20 140 -122 1923 109 3 84 chr4 71095877 71096199 -113192463 + AluSx SINE Alu 1 296 -16 274 235 0 15 chr4 71096366 71096434 -113192228 + L1MC/D LINE L1 5741 5807 -2001 374 210 176 34 chr4 71096631 71096750 -113191912 + L2 LINE L2 3175 3310 -3 263 337 0 22 chr4 71096774 71096866 -113191796 - L3 LINE CR1 -1258 319 230 207 397 44 0 chr4 71096921 71096989 -113191673 + L2 LINE L2 3125 3195 -77 207 0 0 0 chr4 71096989 71097012 -113191650 + (T)n Simple_repeat Simple_repeat 1 23 0 2843 89 14 14 chr4 71097197 71097622 -113191040 + L1PB2 LINE L1 5727 6151 0 415 299 67 6 chr4 71097643 71097807 -113190855 - MIR SINE MIR -75 187 14 447 288 127 44 chr4 71098739 71098968 -113189694 + MIR SINE MIR 14 261 -1 202 267 33 0 chr4 71099238 71099298 -113189364 + GA-rich Low_complexity Low_complexity 4 65 0 2312 92 3 0 chr4 71099820 71100113 -113188549 + AluSp SINE Alu 1 294 -19 2056 120 0 7 chr4 71101143 71101458 -113187204 - AluSx SINE Alu 0 313 1 23 0 0 0 chr4 71101458 71101481 -113187181 + AT_rich Low_complexity Low_complexity 1 23 0 444 231 25 25 chr4 71101561 71101682 -113186980 - L2 LINE L2 -3 3310 3190 897 282 48 12 chr4 71101781 71102033 -113186629 - MIR SINE MIR 0 262 2 2479 39 3 23 chr4 71103399 71103707 -113184955 + AluY SINE Alu 1 302 -9 2072 119 0 3 chr4 71104026 71104320 -113184342 + AluSx SINE Alu 1 293 -19 2469 50 0 0 chr4 71104799 71105081 -113183581 - AluSp SINE Alu -10 303 22 2069 128 0 6 chr4 71105475 71105788 -113182874 - AluY SINE Alu 0 311 1 462 47 31 0 chr4 71105964 71106028 -113182634 - AluS SINE Alu -226 87 22 2589 48 0 6 chr4 71106422 71106735 -113181927 - AluY SINE Alu 0 311 1 215 278 9 0 chr4 71106784 71106899 -113181763 + (TA)n Simple_repeat Simple_repeat 1 116 0 1900 193 44 24 chr4 71106902 71107357 -113181305 - L1ME3 LINE L1 -81 6081 5618 25 0 0 0 chr4 71108394 71108419 -113180243 + AT_rich Low_complexity Low_complexity 1 25 0 2243 103 0 3 chr4 71108415 71108707 -113179955 - AluSq SINE Alu -22 291 1 1675 209 106 52 chr4 71110242 71110664 -113177998 + L1MC4 LINE L1 7466 7871 -124 258 116 0 0 chr4 71110664 71110707 -113177955 + (TAGA)n Simple_repeat Simple_repeat 3 45 0 1675 209 106 52 chr4 71110707 71110840 -113177822 + L1MC4 LINE L1 7871 7995 0 1905 129 39 95 chr4 71110855 71110967 -113177695 - MLT1B LTR MaLR -2 388 271 2431 174 35 43 chr4 71110967 71111455 -113177207 - MER66B LTR ERV1 0 486 3 1905 129 39 95 chr4 71111455 71111644 -113177018 - MLT1B LTR MaLR -119 271 113 2095 73 8 4 chr4 71111644 71111905 -113176757 + AluY SINE Alu 37 298 -13 1905 129 39 95 chr4 71111905 71112013 -113176649 - MLT1B LTR MaLR -277 113 1 983 204 0 0 chr4 71162115 71162282 -113126380 + AluJb SINE Alu 135 301 -11 2245 126 0 0 chr4 71162529 71162831 -113125831 + AluSx SINE Alu 1 302 -10 1777 203 0 3 chr4 71163410 71163705 -113124957 + AluJo SINE Alu 1 294 -18 274 219 94 0 chr4 71164064 71164128 -113124534 + MIR SINE MIR 193 262 0 225 178 0 0 chr4 71164236 71164281 -113124381 + (CATA)n Simple_repeat Simple_repeat 2 46 0 23 33 0 0 chr4 71164375 71164405 -113124257 + AT_rich Low_complexity Low_complexity 1 30 0 380 338 121 0 chr4 71164700 71164857 -113123805 - MIR3 SINE MIR -9 199 24 2509 61 3 3 chr4 71164857 71165167 -113123495 - AluY SINE Alu -1 310 1 264 43 58 29 chr4 71165412 71165481 -113123181 + (TA)n Simple_repeat Simple_repeat 1 71 0 1796 105 16 4 chr4 71165481 71165728 -113122934 - AluSg SINE Alu -24 286 37 566 139 10 0 chr4 71165834 71165935 -113122727 + L1MC4 LINE L1 6911 7012 -1030 * 1783 153 41 46 chr4 71165934 71166234 -113122428 + L1ME LINE L1 5286 5585 -581 2833 7 0 0 chr4 71166234 71166541 -113122121 - AluYa5 SINE Alu -4 307 1 1783 153 41 46 chr4 71166541 71166633 -113122029 + L1ME LINE L1 5585 5676 -490 203 298 21 0 chr4 71166765 71166812 -113121850 - L2 LINE L2 -350 2922 2875 1461 263 120 13 chr4 71166952 71167554 -113121108 - L2 LINE L2 -705 2609 1944 758 270 66 52 chr4 71167573 71167995 -113120667 - MLT1J1 LTR MaLR -18 428 1 405 326 130 0 chr4 71168001 71168185 -113120477 - L2 LINE L2 -1395 1919 1712 349 194 37 28 chr4 71169014 71169122 -113119540 + HAL1b LINE L1 697 805 -543 1649 188 10 32 chr4 71169156 71169465 -113119197 + AluJo SINE Alu 3 304 -8 825 208 12 24 chr4 71169601 71169769 -113118893 + FRAM SINE Alu 1 166 0 24 0 0 0 chr4 71169790 71169814 -113118848 + AT_rich Low_complexity Low_complexity 1 24 0 1863 107 3 110 chr4 71169824 71170161 -113118501 + AluSp SINE Alu 1 301 -12 879 52 17 0 chr4 71170201 71170317 -113118345 + L1PA10 LINE L1 5786 5903 -265 2046 132 0 7 chr4 71170500 71170802 -113117860 + AluSx SINE Alu 3 302 0 2248 105 0 13 chr4 71170844 71171157 -113117505 + AluSg1 SINE Alu 1 309 0 444 258 32 32 chr4 71171680 71171866 -113116796 - L1MC5 LINE L1 -44 7917 7732 225 0 0 0 chr4 71171973 71171998 -113116664 + (TAAAA)n Simple_repeat Simple_repeat 4 28 0 365 245 54 11 chr4 71172074 71172258 -113116404 - L1MC5 LINE L1 -296 7665 7474 33 25 0 0 chr4 71173696 71173736 -113114926 + AT_rich Low_complexity Low_complexity 1 40 0 201 39 0 0 chr4 71174254 71174280 -113114382 + (CA)n Simple_repeat Simple_repeat 1 26 0 23 33 0 0 chr4 71174463 71174493 -113114169 + AT_rich Low_complexity Low_complexity 1 30 0 1680 98 0 0 chr4 71174555 71174770 -113113892 + AluSq SINE Alu 1 215 -98 2328 62 0 3 chr4 71175012 71175303 -113113359 + AluY SINE Alu 1 290 -21 335 214 62 45 chr4 71175532 71175644 -113113018 + L1ME4a LINE L1 6008 6121 0 268 132 162 0 chr4 71175858 71175926 -113112736 + L1ME2 LINE L1 6076 6154 -10 2345 103 0 3 chr4 71175943 71176255 -113112407 + AluSx SINE Alu 1 311 -1 367 90 0 30 chr4 71177074 71177141 -113111521 + (TA)n Simple_repeat Simple_repeat 1 65 0 897 275 94 55 chr4 71177769 71177899 -113110763 + L1M4 LINE L1 2140 2263 -3883 2316 100 10 0 chr4 71177899 71178198 -113110464 + AluSq SINE Alu 1 302 -11 897 275 94 55 chr4 71178198 71178317 -113110345 + L1M4 LINE L1 2263 2376 -3770 1957 164 3 0 chr4 71178317 71178610 -113110052 + AluJo SINE Alu 1 294 -18 2018 122 3 34 chr4 71178616 71178912 -113109750 + AluSc SINE Alu 1 287 -22 897 275 94 55 chr4 71178912 71179630 -113109032 + L1M4 LINE L1 2380 3153 -2993 283 196 20 0 chr4 71179635 71179686 -113108976 + MER68 LTR ERV1 511 562 0 1099 93 13 0 chr4 71180440 71180591 -113108071 - AluSg/x SINE Alu -64 248 96 248 96 39 0 chr4 71180653 71180705 -113107957 + (TTAAA)n Simple_repeat Simple_repeat 3 56 0 2537 47 0 0 chr4 71180792 71181089 -113107573 - AluY SINE Alu -14 297 1 25 0 0 0 chr4 71181511 71181536 -113107126 + AT_rich Low_complexity Low_complexity 1 25 0 2575 58 6 0 chr4 71182332 71182643 -113106019 + AluSp SINE Alu 1 313 0 1414 113 0 0 chr4 71184716 71184901 -113103761 + AluSq SINE Alu 1 185 -128 2315 99 0 7 chr4 71185060 71185362 -113103300 - AluSg SINE Alu -10 300 1 338 288 136 0 chr4 71185691 71185809 -113102853 + MIR SINE MIR 61 194 -68 253 274 162 43 chr4 71185846 71185963 -113102699 + L2 LINE L2 3173 3303 -10 1672 175 21 4 chr4 71186511 71186791 -113101871 - AluJb SINE Alu -27 285 1 247 301 252 18 chr4 71186944 71187230 -113101432 + L2 LINE L2 2606 2958 -356 228 344 16 0 chr4 71187390 71187454 -113101208 + L2 LINE L2 3232 3296 -17 2228 71 3 3 chr4 71187460 71187775 -113100887 + AluSp SINE Alu 1 315 0 2220 105 3 3 chr4 71188630 71188924 -113099738 - AluSq SINE Alu -19 294 1 885 151 0 0 chr4 71189066 71189192 -113099470 - FLAM_C SINE Alu -17 126 1 2148 108 14 3 chr4 71189326 71189623 -113099039 + AluSg SINE Alu 1 300 -10 804 50 0 0 chr4 71189623 71189724 -113098938 + (GGAA)n Simple_repeat Simple_repeat 3 103 0 222 37 0 0 chr4 71191141 71191168 -113097494 + (CA)n Simple_repeat Simple_repeat 2 28 0 199 196 43 22 chr4 71191544 71191590 -113097072 + L2 LINE L2 3218 3264 -8 23 33 0 0 chr4 71191698 71191728 -113096934 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr4 71191894 71191918 -113096744 + AT_rich Low_complexity Low_complexity 1 24 0 3936 193 98 43 chr4 71192030 71192957 -113095705 + Charlie1a DNA MER1_type 1 999 -1762 2180 105 34 0 chr4 71192957 71193252 -113095410 + AluSp SINE Alu 1 305 -8 3936 193 98 43 chr4 71193252 71193428 -113095234 + Charlie1a DNA MER1_type 999 1164 -291 22 35 0 0 chr4 71194095 71194124 -113094538 + AT_rich Low_complexity Low_complexity 1 29 0 1181 153 0 11 chr4 71194142 71194319 -113094343 - AluJb SINE Alu -19 293 119 727 99 141 0 chr4 71194419 71194540 -113094122 + AluY SINE Alu 160 297 -14 1003 128 13 0 chr4 71195676 71195825 -113092837 + AluSc SINE Alu 145 295 -14 2256 88 3 0 chr4 71195883 71196168 -113092494 + AluSp SINE Alu 1 286 -27 225 0 0 0 chr4 71196168 71196193 -113092469 + (CA)n Simple_repeat Simple_repeat 2 26 0 1075 149 18 59 chr4 71196469 71196691 -113091971 + MER46A DNA MER2_type 23 235 -1 2344 101 0 0 chr4 71197028 71197324 -113091338 - AluSg SINE Alu -14 296 1 192 191 57 133 chr4 71198201 71198306 -113090356 - L2 LINE L2 -9 3304 3208 2417 38 0 10 chr4 71198633 71198924 -113089738 - AluY SINE Alu -21 290 3 180 0 0 0 chr4 71198934 71198954 -113089708 + (T)n Simple_repeat Simple_repeat 1 20 0 600 174 0 0 chr4 71199235 71199344 -113089318 - AluSp/q SINE Alu -1 312 204 318 115 0 39 chr4 71199344 71199382 -113089280 - AluSg/x SINE Alu -131 171 134 2131 113 3 3 chr4 71199382 71199682 -113088980 - AluSp SINE Alu -13 300 1 318 115 0 39 chr4 71199682 71199695 -113088967 - AluSg/x SINE Alu -168 134 122 1267 190 123 7 chr4 71200126 71200395 -113088267 - AluYa8 SINE Alu -8 302 3 271 194 114 51 chr4 71200398 71200562 -113088100 + MER34C LTR ERV1 368 530 -12 227 167 0 0 chr4 71201016 71201052 -113087610 + L2 LINE L2 3236 3271 -1 2408 71 3 0 chr4 71201967 71202263 -113086399 - AluSg SINE Alu -5 305 9 1947 138 0 3 chr4 71202280 71202562 -113086100 - AluJo SINE Alu -20 292 12 2211 72 4 11 chr4 71202662 71202941 -113085721 - AluSp SINE Alu -36 277 1 340 338 72 43 chr4 71203289 71203496 -113085166 + L1MEd LINE L1 530 742 -5377 239 245 97 65 chr4 71203543 71203698 -113084964 - LTR41 LTR ERVL -23 750 591 216 0 0 0 chr4 71203965 71203989 -113084673 + (A)n Simple_repeat Simple_repeat 1 24 0 733 164 10 106 chr4 71203989 71204196 -113084466 - LTR41 LTR ERVL -586 187 1 342 328 42 66 chr4 71204196 71204290 -113084372 + L1MEd LINE L1 582 677 -5442 1684 187 0 31 chr4 71204290 71204609 -113084053 + AluJb SINE Alu 1 310 0 342 328 42 66 chr4 71204609 71204754 -113083908 + L1MEd LINE L1 677 816 -5303 251 227 0 0 chr4 71204906 71204972 -113083690 + L1ME LINE L1 180 245 -5960 558 283 56 46 chr4 71205282 71205326 -113083336 + L1ME LINE L1 1274 1316 -5080 2178 128 0 3 chr4 71205326 71205623 -113083039 - AluSx SINE Alu -15 297 2 558 283 56 46 chr4 71205623 71205912 -113082750 + L1ME LINE L1 1316 1616 -4780 1105 177 0 0 chr4 71205912 71206087 -113082575 - FAM SINE Alu 0 175 1 558 283 56 46 chr4 71206087 71206272 -113082390 + L1ME LINE L1 1616 1798 -4598 613 227 42 10 chr4 71206541 71206826 -113081836 + L1ME LINE L1 2182 2382 -3833 2275 108 10 0 chr4 71206826 71207131 -113081531 + AluSg SINE Alu 1 308 -2 2119 89 14 14 chr4 71207470 71207785 -113080877 + AluSq SINE Alu 3 313 0 249 191 348 0 chr4 71207794 71207883 -113080779 - MIR SINE MIR -36 226 107 2303 94 3 0 chr4 71208100 71208399 -113080263 + AluSp SINE Alu 1 300 -13 2310 72 7 26 chr4 71208483 71208790 -113079872 + AluSc SINE Alu 1 301 -8 189 0 0 0 chr4 71210613 71210634 -113078028 + (TA)n Simple_repeat Simple_repeat 1 21 0 1584 163 21 21 chr4 71213144 71213426 -113075236 - AluJo SINE Alu -30 282 1 22 0 0 0 chr4 71214298 71214320 -113074342 + AT_rich Low_complexity Low_complexity 1 22 0 2305 104 3 3 chr4 71215385 71215694 -113072968 + AluSc SINE Alu 1 309 0 2089 80 0 4 chr4 71217068 71217330 -113071332 + AluSq SINE Alu 24 284 -29 186 43 0 0 chr4 71217333 71217356 -113071306 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2255 75 31 0 chr4 71217470 71217763 -113070899 + AluSp SINE Alu 1 302 -11 1025 130 0 20 chr4 71218023 71218169 -113070493 - FRAM SINE Alu -18 158 16 2048 105 3 40 chr4 71219658 71219962 -113068700 + AluSx SINE Alu 1 293 -19 519 291 124 9 chr4 71219980 71220190 -113068472 + MIR SINE MIR 26 259 -3 22 56 0 0 chr4 71220889 71220925 -113067737 + AT_rich Low_complexity Low_complexity 1 36 0 2089 146 0 3 chr4 71223302 71223610 -113065052 - AluSx SINE Alu -5 307 1 255 81 0 0 chr4 71224511 71224548 -113064114 - MADE1 DNA Mariner -42 38 2 2397 65 14 0 chr4 71225767 71226058 -113062604 + AluSp SINE Alu 1 295 -18 1559 216 0 10 chr4 71226065 71226370 -113062292 - AluJb SINE Alu -10 302 1 21 0 0 0 chr4 71226373 71226394 -113062268 + AT_rich Low_complexity Low_complexity 1 21 0 2112 93 19 22 chr4 71226429 71226740 -113061922 - AluSg SINE Alu 0 310 1 2614 178 36 81 chr4 71226854 71227121 -113061541 - MER82 DNA MER2_type 0 653 376 2286 93 13 19 chr4 71227121 71227431 -113061231 - AluSx SINE Alu -4 308 1 2614 178 36 81 chr4 71227431 71227640 -113061022 - MER82 DNA MER2_type -277 376 159 753 194 0 0 chr4 71227640 71227764 -113060898 + FLAM_C SINE Alu 1 124 -9 2614 178 36 81 chr4 71227764 71227883 -113060779 - MER82 DNA MER2_type -494 159 88 1753 195 3 0 chr4 71227883 71228175 -113060487 - AluJo SINE Alu -19 293 1 2614 178 36 81 chr4 71228175 71228246 -113060416 - MER82 DNA MER2_type -565 88 15 6041 127 82 11 chr4 71228583 71229190 -113059472 - Tigger3b DNA MER2_type -1806 1222 659 2171 96 41 0 chr4 71229190 71229483 -113059179 - AluSx SINE Alu -7 305 1 6041 127 82 11 chr4 71229483 71230013 -113058649 - Tigger3b DNA MER2_type -2369 659 5 2434 70 0 3 chr4 71230574 71230873 -113057789 - AluY SINE Alu -13 298 1 244 222 102 46 chr4 71231105 71231213 -113057449 + L2 LINE L2 3160 3273 -40 852 155 108 52 chr4 71231231 71231375 -113057287 - MER5C DNA MER1_type 0 324 159 2416 66 0 0 chr4 71231375 71231664 -113056998 - AluY SINE Alu -22 289 1 852 155 108 52 chr4 71231664 71231770 -113056892 - MER5C DNA MER1_type -165 159 60 2157 112 0 0 chr4 71232022 71232308 -113056354 - AluSx SINE Alu -26 286 1 2320 125 0 0 chr4 71233206 71233518 -113055144 + AluSx SINE Alu 1 312 0 488 276 82 62 chr4 71233567 71234005 -113054657 - MLT1J LTR MaLR -49 462 16 266 235 20 69 chr4 71234561 71234663 -113053999 - MIR SINE MIR 0 262 166 1557 197 25 18 chr4 71234878 71235162 -113053500 - AluJo SINE Alu -26 286 1 2117 85 54 20 chr4 71235191 71235486 -113053176 - AluY SINE Alu -6 305 1 2391 86 13 0 chr4 71235486 71235789 -113052873 - AluSp SINE Alu -6 307 1 1525 182 4 4 chr4 71235816 71236074 -113052588 - AluSx SINE Alu -54 258 1 1438 181 49 4 chr4 71236386 71236500 -113052162 + AluJb SINE Alu 2 109 -203 2116 135 3 6 chr4 71236500 71236811 -113051851 + AluSx SINE Alu 1 310 -2 1438 181 49 4 chr4 71236811 71236939 -113051723 + AluJb SINE Alu 109 255 -57 1730 126 0 0 chr4 71237039 71237270 -113051392 - AluSx SINE Alu -81 231 1 604 99 272 0 chr4 71237320 71237462 -113051200 - MER30 DNA MER1_type -35 195 1 192 298 0 0 chr4 71238246 71238293 -113050369 - MIR SINE MIR -16 246 200 198 103 0 0 chr4 71238298 71238327 -113050335 + (TA)n Simple_repeat Simple_repeat 2 30 0 420 140 15 184 chr4 71238336 71238472 -113050190 - MIR SINE MIR -51 211 99 631 167 8 0 chr4 71238575 71238695 -113049967 - FLAM_C SINE Alu -1 142 22 552 246 190 22 chr4 71238729 71238813 -113049849 + MIR SINE MIR 26 95 -167 1734 86 5 0 chr4 71238813 71239035 -113049627 + AluSp SINE Alu 81 303 -10 552 246 190 22 chr4 71239035 71239129 -113049533 + MIR SINE MIR 95 234 -28 2174 86 65 0 chr4 71239248 71239538 -113049124 + AluSp SINE Alu 1 309 -4 2158 44 65 4 chr4 71239683 71239958 -113048704 + AluY SINE Alu 7 298 -13 1487 151 12 133 chr4 71241026 71241168 -113047494 + AluJb SINE Alu 1 159 -143 1632 191 17 3 chr4 71241168 71241467 -113047195 + AluJo SINE Alu 3 305 -7 2250 112 0 0 chr4 71241477 71241780 -113046882 + AluSg SINE Alu 1 303 -7 1487 151 12 133 chr4 71241780 71241964 -113046698 + AluJb SINE Alu 169 297 -5 708 159 0 0 chr4 71242064 71242171 -113046491 - FLAM_A SINE Alu -35 107 1 866 159 8 0 chr4 71242473 71242599 -113046063 - FLAM_C SINE Alu -16 127 1 432 260 81 8 chr4 71242845 71242968 -113045694 + L2 LINE L2 3182 3313 0 1773 181 13 3 chr4 71243003 71243301 -113045361 - AluJo SINE Alu -11 301 1 2271 113 3 0 chr4 71243375 71243675 -113044987 + AluSx SINE Alu 1 301 -11 2213 116 0 0 chr4 71243768 71244061 -113044601 + AluSq SINE Alu 1 293 -20 998 101 20 0 chr4 71244375 71244524 -113044138 + L1MA5 LINE L1 6143 6294 -6 186 103 0 0 chr4 71244530 71244559 -113044103 + (CATATA)n Simple_repeat Simple_repeat 3 31 0 185 280 0 20 chr4 71245278 71245328 -113043334 + MIR SINE MIR 42 90 -172 2601 197 64 50 chr4 71245634 71245838 -113042824 + L1MC4 LINE L1 7174 7374 -668 1526 179 16 35 chr4 71245838 71246150 -113042512 + AluJo SINE Alu 1 306 -6 2601 197 64 50 chr4 71246150 71246683 -113041979 + L1MC4 LINE L1 7374 7925 -117 2269 99 0 3 chr4 71246683 71246985 -113041677 + AluSq SINE Alu 2 302 -11 2601 197 64 50 chr4 71246985 71247007 -113041655 + L1MC4 LINE L1 7925 7945 -97 226 264 0 19 chr4 71247337 71247390 -113041272 - MIR SINE MIR -143 119 68 204 193 53 35 chr4 71247518 71247575 -113041087 + L2 LINE L2 3213 3270 -2 1139 158 0 26 chr4 71248508 71248698 -113039964 - AluSg/x SINE Alu -13 297 113 723 242 66 35 chr4 71248953 71249180 -113039482 + MIR SINE MIR 19 252 -10 769 280 91 9 chr4 71249590 71249822 -113038840 - MIR SINE MIR 0 262 12 324 283 42 37 chr4 71249895 71250086 -113038576 + L1ME LINE L1 5583 5774 -347 294 287 111 66 chr4 71250409 71250590 -113038072 + MIR SINE MIR 48 236 -26 1878 128 7 21 chr4 71251124 71251414 -113037248 - AluSx SINE Alu -26 286 1 743 185 12 43 chr4 71251487 71251649 -113037013 + FRAM SINE Alu 1 157 -19 639 83 0 0 chr4 71252111 71252195 -113036467 - HY4 scRNA scRNA -9 84 1 2548 53 3 0 chr4 71252203 71252503 -113036159 - AluSp SINE Alu -12 301 1 287 267 133 20 chr4 71253033 71253183 -113035479 - L2 LINE L2 -23 3290 3124 1145 157 34 105 chr4 71253244 71253511 -113035151 - AluJo SINE Alu -18 294 47 2014 122 3 10 chr4 71253562 71253857 -113034805 + AluSg1 SINE Alu 1 293 -16 1603 161 4 8 chr4 71253873 71254133 -113034529 + AluSx SINE Alu 44 302 -10 746 125 23 16 chr4 71254144 71254272 -113034390 + AluJo SINE Alu 6 134 -178 813 176 99 0 chr4 71254736 71254878 -113033784 + AluJo SINE Alu 9 164 -148 483 69 0 0 chr4 71254878 71254950 -113033712 + (CA)n Simple_repeat Simple_repeat 1 72 0 1765 173 0 10 chr4 71256269 71256570 -113032092 + AluJb SINE Alu 1 298 -14 1922 133 10 7 chr4 71256874 71257167 -113031495 + AluY SINE Alu 1 294 -17 336 299 39 24 chr4 71257586 71257713 -113030949 + L3 LINE CR1 893 1021 -556 319 319 178 14 chr4 71257732 71257945 -113030717 + L3 LINE CR1 1329 1576 -1 1759 86 8 8 chr4 71259075 71259309 -113029353 + AluSq SINE Alu 1 234 -79 204 322 87 26 chr4 71259955 71260070 -113028592 - MIR SINE MIR -112 150 29 705 231 57 57 chr4 71263880 71263947 -113024715 - MIR SINE MIR -30 232 166 270 81 0 0 chr4 71263947 71263984 -113024678 + (TA)n Simple_repeat Simple_repeat 2 38 0 2416 82 0 7 chr4 71263984 71264287 -113024375 - AluSg SINE Alu -9 301 1 705 231 57 57 chr4 71264287 71264447 -113024215 - MIR SINE MIR -94 168 4 358 299 19 0 chr4 71264447 71264554 -113024108 - L1ME LINE L1 -371 5799 5691 1016 175 68 0 chr4 71264593 71264770 -113023892 - MER5A DNA MER1_type 0 189 1 2445 61 3 3 chr4 71264775 71265070 -113023592 + AluSp SINE Alu 1 295 -18 465 228 117 56 chr4 71265086 71265248 -113023414 - MER58C DNA MER1_type 0 215 44 241 203 40 0 chr4 71265389 71265463 -113023199 + L2 LINE L2 2571 2647 -667 708 292 160 29 chr4 71265531 71265601 -113023061 + L2 LINE L2 2424 2483 -831 1958 116 0 0 chr4 71265601 71265860 -113022802 - AluSx SINE Alu -6 306 48 708 292 160 29 chr4 71265860 71266245 -113022417 + L2 LINE L2 2483 2939 -375 2447 88 0 0 chr4 71266555 71266860 -113021802 + AluSg SINE Alu 1 305 -5 1425 207 42 66 chr4 71267064 71267397 -113021265 + MLT1A1 LTR MaLR 1 325 -40 1065 177 190 17 chr4 71267409 71267562 -113021100 - AluJo SINE Alu 0 309 184 405 0 0 0 chr4 71267562 71267607 -113021055 + (TG)n Simple_repeat Simple_repeat 2 46 0 1065 177 190 17 chr4 71267607 71267711 -113020951 - AluJo SINE Alu -125 184 12 289 83 0 0 chr4 71267723 71267759 -113020903 + MLT1A1 LTR MaLR 339 374 0 788 209 0 0 chr4 71267799 71267933 -113020729 + FLAM_A SINE Alu 1 134 -8 982 225 26 26 chr4 71267936 71268163 -113020499 + MIR SINE MIR 28 254 -8 244 292 142 0 chr4 71269617 71269737 -113018925 + MIR SINE MIR 49 185 -77 2390 86 0 16 chr4 71269950 71270264 -113018398 + AluSc SINE Alu 1 309 0 2418 60 3 0 chr4 71270308 71270612 -113018050 + AluSx SINE Alu 1 305 0 2916 153 19 40 chr4 71270647 71270833 -113017829 - MER44D DNA MER2_type -1883 604 416 2462 80 3 0 chr4 71270833 71271135 -113017527 + AluSx SINE Alu 1 303 -9 2916 153 19 40 chr4 71271135 71271400 -113017262 - MER44D DNA MER2_type -2071 416 108 2472 73 0 3 chr4 71271400 71271700 -113016962 + AluSc SINE Alu 1 299 -10 2916 153 19 40 chr4 71271700 71271765 -113016897 - MER44D DNA MER2_type -2379 108 43 2407 91 0 13 chr4 71271965 71272274 -113016388 + AluSc SINE Alu 1 305 -4 2346 92 7 13 chr4 71272545 71272851 -113015811 + AluSq SINE Alu 1 304 -9 212 131 16 33 chr4 71273374 71273389 -113015273 + A-rich Low_complexity Low_complexity 1 15 -45 2168 119 10 7 chr4 71273389 71273692 -113014970 + AluSg SINE Alu 1 304 -6 212 131 16 33 chr4 71273692 71273737 -113014925 + A-rich Low_complexity Low_complexity 15 60 0 767 152 115 55 chr4 71273795 71273960 -113014702 - FAM SINE Alu 0 175 1 415 232 26 46 chr4 71274296 71274447 -113014215 + L1MD2 LINE L1 6209 6356 -3 2396 104 0 0 chr4 71274484 71274791 -113013871 + AluSx SINE Alu 1 307 -5 296 314 199 11 chr4 71274791 71274982 -113013680 + MIR SINE MIR 25 251 -11 189 107 0 0 chr4 71275209 71275237 -113013425 + (GGAA)n Simple_repeat Simple_repeat 3 30 0 210 162 27 0 chr4 71275247 71275284 -113013378 + (CA)n Simple_repeat Simple_repeat 1 38 0 252 215 15 111 chr4 71275698 71275833 -113012829 - L2 LINE L2 -230 3042 2921 683 185 0 8 chr4 71276212 71276331 -113012331 + FLAM_C SINE Alu 2 119 -24 225 65 0 0 chr4 71276331 71276362 -113012300 + (CATA)n Simple_repeat Simple_repeat 2 32 0 2142 125 42 33 chr4 71276397 71276756 -113011906 + THE1B LTR MaLR 1 362 -2 1857 183 34 3 chr4 71276950 71277278 -113011384 + LTR32 LTR ERVL 15 352 -119 587 165 0 17 chr4 71277322 71277437 -113011225 + LTR32 LTR ERVL 333 445 -26 904 143 8 0 chr4 71277475 71277608 -113011054 - AluSq/x SINE Alu -179 134 1 2257 79 24 0 chr4 71278366 71278656 -113010006 + AluSx SINE Alu 1 297 -15 649 233 30 0 chr4 71279052 71279350 -113009312 + L1ME3A LINE L1 5832 6170 0 2277 104 13 7 chr4 71279417 71279724 -113008938 + AluSq SINE Alu 1 309 -4 562 167 51 139 chr4 71279736 71279864 -113008798 + L1MB7 LINE L1 5932 6035 -149 1496 183 30 0 chr4 71279864 71280127 -113008535 - AluJb SINE Alu -39 273 3 562 167 51 139 chr4 71280127 71280214 -113008448 + L1MB7 LINE L1 6035 6128 -56 2108 128 0 3 chr4 71280334 71280638 -113008024 - AluSx SINE Alu -1 311 9 900 126 0 0 chr4 71280643 71280770 -113007892 - FLAM_C SINE Alu -2 131 5 688 218 14 7 chr4 71280933 71281075 -113007587 - MER5B DNA MER1_type 0 178 36 236 162 0 0 chr4 71281154 71281191 -113007471 - MER5B DNA MER1_type -134 44 8 184 250 54 18 chr4 71281232 71281288 -113007374 + MIR SINE MIR 65 122 -140 2317 102 0 0 chr4 71281581 71281874 -113006788 - AluSg SINE Alu -16 294 2 1062 239 58 55 chr4 71282114 71282230 -113006432 + MER102b DNA MER1_type 1 115 -1313 2169 116 3 0 chr4 71282230 71282531 -113006131 + AluSg SINE Alu 1 302 -8 1062 239 58 55 chr4 71282531 71282744 -113005918 + MER102b DNA MER1_type 115 331 -10 2306 92 3 0 chr4 71282775 71283067 -113005595 + AluSg SINE Alu 2 294 -16 1239 198 0 26 chr4 71283074 71283306 -113005356 - AluJo SINE Alu -86 226 1 2295 69 0 10 chr4 71283585 71283875 -113004787 + AluY SINE Alu 1 287 -24 863 103 0 0 chr4 71283890 71284038 -113004624 + AluSp/q SINE Alu 170 317 0 2461 87 3 0 chr4 71284958 71285267 -113003395 + AluSq SINE Alu 1 310 -3 2370 88 7 0 chr4 71286260 71286567 -113002095 + AluY SINE Alu 1 309 -2 587 208 60 0 chr4 71286591 71286740 -113001922 + L1MC5 LINE L1 7727 7884 -77 2211 129 0 0 chr4 71286917 71287227 -113001435 + AluSx SINE Alu 1 310 -2 2029 182 12 46 chr4 71287293 71287761 -113000901 + MLT1D LTR MaLR 1 545 -81 1109 256 108 58 chr4 71287803 71287973 -113000689 + L2 LINE L2 1263 1423 -1891 1477 175 80 4 chr4 71287973 71288247 -113000415 - AluJb SINE Alu -16 296 2 1109 256 108 58 chr4 71288247 71288659 -113000003 + L2 LINE L2 1423 1874 -1440 262 316 41 0 chr4 71288639 71288737 -112999925 - MIR SINE MIR -78 184 83 * 23 86 0 0 chr4 71289045 71289103 -112999559 + AT_rich Low_complexity Low_complexity 1 58 0 2172 114 0 0 chr4 71289328 71289617 -112999045 - AluSc SINE Alu -20 289 1 2361 102 0 0 chr4 71289681 71289984 -112998678 - AluSg SINE Alu -7 303 1 1584 113 4 22 chr4 71290109 71290338 -112998324 - AluSq SINE Alu -18 295 71 2757 14 0 0 chr4 71292774 71293068 -112995594 - AluYa5 SINE Alu -6 305 12 668 289 95 53 chr4 71293135 71293546 -112995116 - MLT1K LTR MaLR -74 514 87 192 77 0 0 chr4 71293896 71293922 -112994740 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 2183 113 10 13 chr4 71293977 71294287 -112994375 - AluSc SINE Alu 0 309 1 1338 150 31 18 chr4 71294759 71294985 -112993677 - AluJb SINE Alu -83 229 1 2463 83 3 0 chr4 71295331 71295643 -112993019 + AluSp SINE Alu 1 313 0 2305 86 7 0 chr4 71295969 71296260 -112992402 - AluSp SINE Alu -20 293 1 787 141 141 14 chr4 71296394 71296536 -112992126 - AluSg/x SINE Alu -18 294 135 2329 56 42 0 chr4 71296605 71296890 -112991772 + AluY SINE Alu 2 298 -13 1966 108 48 0 chr4 71296899 71297215 -112991447 + AluY SINE Alu 1 329 0 1313 167 0 39 chr4 71297225 71297458 -112991204 + AluJo SINE Alu 1 224 -88 1194 78 7 7 chr4 71297459 71297612 -112991050 - AluSp SINE Alu -160 153 1 1757 145 14 44 chr4 71297622 71297918 -112990744 - AluJb SINE Alu -14 298 12 21 0 0 0 chr4 71297964 71297985 -112990677 + AT_rich Low_complexity Low_complexity 1 21 0 623 315 46 62 chr4 71299441 71300149 -112988513 - L2 LINE L2 -219 3053 2284 22 0 0 0 chr4 71301979 71302001 -112986661 + AT_rich Low_complexity Low_complexity 1 22 0 246 143 0 0 chr4 71302105 71302154 -112986508 - L1MC3 LINE L1 -1 7784 7736 467 267 60 69 chr4 71302211 71302367 -112986295 - MIR SINE MIR -1 261 108 2568 56 3 0 chr4 71302367 71302669 -112985993 + AluSp SINE Alu 1 303 -10 467 267 60 69 chr4 71302669 71302764 -112985898 - MIR SINE MIR -154 108 14 693 195 8 0 chr4 71302821 71302949 -112985713 + FLAM_A SINE Alu 1 129 -4 191 186 0 23 chr4 71304368 71304411 -112984251 + L2 LINE L2 3272 3313 0 1665 83 64 134 chr4 71304712 71305025 -112983637 + AluSx SINE Alu 1 291 -21 2381 87 7 0 chr4 71305152 71305461 -112983201 - AluY SINE Alu 0 311 1 2005 121 0 4 chr4 71305726 71306006 -112982656 - AluSx SINE Alu -33 279 1 709 110 18 18 chr4 71307181 71307290 -112981372 - FLAM_C SINE Alu -12 131 23 2337 104 0 0 chr4 71307645 71307942 -112980720 + AluSx SINE Alu 1 297 -15 180 189 0 0 chr4 71308105 71308142 -112980520 + L2 LINE L2 3275 3311 -2 2919 147 26 16 chr4 71308374 71308878 -112979784 - L1PA16 LINE L1 -6 6160 5652 2400 80 0 7 chr4 71308964 71309265 -112979397 + AluSg SINE Alu 3 301 -9 2394 79 0 0 chr4 71309345 71309635 -112979027 + AluSg SINE Alu 1 290 -20 5458 176 29 25 chr4 71309693 71310302 -112978360 - L1PA16 LINE L1 -526 5640 5035 2303 94 7 16 chr4 71310302 71310610 -112978052 - AluSc SINE Alu -4 305 1 5458 176 29 25 chr4 71310610 71311086 -112977576 - L1PA16 LINE L1 -1131 5035 4550 2363 120 0 0 chr4 71311086 71311395 -112977267 - AluSx SINE Alu -3 309 1 5458 176 29 25 chr4 71311395 71311823 -112976839 - L1PA16 LINE L1 -1616 4550 4125 1688 170 50 3 chr4 71311891 71312174 -112976488 - AluJb SINE Alu -16 296 1 238 204 0 0 chr4 71312520 71312569 -112976093 - L1ME4a LINE L1 -105 6016 5968 1868 95 81 34 chr4 71312674 71312970 -112975692 - AluSx SINE Alu -2 310 1 231 341 12 0 chr4 71313387 71313469 -112975193 - Charlie8 DNA MER1_type -2169 248 166 691 246 118 5 chr4 71313474 71313685 -112974977 + MIR SINE MIR 2 236 -26 326 252 194 0 chr4 71313697 71313800 -112974862 + MER104 DNA Tc2 1 123 -57 2207 86 7 17 chr4 71313843 71314145 -112974517 - AluY SINE Alu -12 299 1 2148 108 7 3 chr4 71314145 71314441 -112974221 - AluSp SINE Alu -16 297 1 193 282 93 99 chr4 71314441 71314753 -112973909 + L2 LINE L2 2170 2479 -835 2252 207 116 4 chr4 71314873 71315381 -112973281 - MLT1F1 LTR MaLR 0 567 3 957 203 116 66 chr4 71315778 71315947 -112972715 + MLT1D LTR MaLR 1 160 -345 2446 73 0 0 chr4 71315947 71316247 -112972415 + AluY SINE Alu 1 300 -11 957 203 116 66 chr4 71316247 71316397 -112972265 + MLT1D LTR MaLR 160 336 -169 2304 82 3 23 chr4 71316566 71316870 -112971792 - AluSp SINE Alu -14 299 2 21 36 0 0 chr4 71316878 71316906 -112971756 + AT_rich Low_complexity Low_complexity 1 28 0 186 133 0 0 chr4 71317004 71317034 -112971628 + (TA)n Simple_repeat Simple_repeat 1 30 0 362 203 212 114 chr4 71317137 71317553 -112971109 - L1ME4a LINE L1 -161 5960 5511 23 78 0 0 chr4 71317718 71317769 -112970893 + AT_rich Low_complexity Low_complexity 1 51 0 778 147 0 31 chr4 71318660 71318789 -112969873 + FLAM_C SINE Alu 1 125 -18 23 0 0 0 chr4 71319171 71319194 -112969468 + AT_rich Low_complexity Low_complexity 1 23 0 2288 109 7 0 chr4 71319371 71319675 -112968987 + AluSx SINE Alu 1 306 -6 2184 120 0 7 chr4 71319684 71319985 -112968677 + AluSx SINE Alu 1 299 -13 2399 94 0 0 chr4 71319989 71320296 -112968366 + AluSx SINE Alu 3 309 -3 21 0 0 0 chr4 71320618 71320639 -112968023 + AT_rich Low_complexity Low_complexity 1 21 0 2220 105 3 7 chr4 71320922 71321216 -112967446 + AluSx SINE Alu 1 293 -19 992 198 0 0 chr4 71321323 71321495 -112967167 + FAM SINE Alu 1 172 -3 392 233 83 0 chr4 71322081 71322214 -112966448 - MIR SINE MIR -55 207 64 2206 111 24 0 chr4 71322222 71322519 -112966143 - AluSc SINE Alu -5 304 1 2421 76 0 0 chr4 71322704 71323006 -112965656 + AluY SINE Alu 1 302 -9 246 203 0 17 chr4 71323155 71323214 -112965448 + MARNA DNA Mariner 408 465 -121 1813 133 111 6 chr4 71323315 71323631 -112965031 + MER47A DNA MER2_type 18 366 0 397 184 51 20 chr4 71324401 71324499 -112964163 - MER103 DNA DNA -34 132 32 820 308 68 16 chr4 71324758 71325080 -112963582 + MER102b DNA MER1_type 3 341 0 826 181 22 70 chr4 71326435 71326662 -112962000 + MER20 DNA MER1_type 4 219 0 651 241 123 40 chr4 71326709 71326937 -112961725 - MIR SINE MIR -14 248 2 1149 273 79 3 chr4 71327049 71327390 -112961272 + L2 LINE L2 1954 2320 -994 277 205 36 0 chr4 71327401 71327484 -112961178 - L1MA10 LINE L1 -9 6325 6240 1390 92 11 0 chr4 71327520 71327705 -112960957 + AluY SINE Alu 1 187 -124 2976 198 83 21 chr4 71327746 71328064 -112960598 - L1M4 LINE L1 -1310 4836 4539 1985 151 13 0 chr4 71328064 71328368 -112960294 - AluJo SINE Alu -4 308 1 2976 198 83 21 chr4 71328368 71328842 -112959820 - L1M4 LINE L1 -1607 4539 3995 1556 242 113 23 chr4 71328842 71329321 -112959341 + L2 LINE L2 2191 2712 -602 287 303 152 0 chr4 71329566 71329711 -112958951 + MER117 DNA MER1_type 2 168 -29 448 221 99 0 chr4 71330075 71330206 -112958456 - L1ME1 LINE L1 -9 6157 6014 24 0 0 0 chr4 71331307 71331331 -112957331 + AT_rich Low_complexity Low_complexity 1 24 0 756 153 0 8 chr4 71331337 71331455 -112957207 - FLAM_C SINE Alu -26 117 1 2341 82 0 7 chr4 71332301 71332592 -112956070 - AluSg SINE Alu -21 289 1 2219 113 0 3 chr4 71332870 71333163 -112955499 + AluSq SINE Alu 1 292 -21 400 282 83 55 chr4 71334485 71334666 -112953996 + MIR3 SINE MIR 16 201 -7 330 246 157 8 chr4 71334956 71335090 -112953572 - L1MDa LINE L1 -4825 1715 1562 330 337 53 81 chr4 71335165 71335312 -112953350 - L2 LINE L2 -1911 1403 1253 2026 156 0 0 chr4 71335312 71335607 -112953055 + AluSx SINE Alu 1 295 -17 330 337 53 81 chr4 71335607 71335889 -112952773 - L2 LINE L2 -2061 1253 986 368 379 114 25 chr4 71335962 71336592 -112952070 - L2 LINE L2 -2527 787 102 5383 159 17 17 chr4 71337347 71338169 -112950493 + L1MC2 LINE L1 5089 5911 -433 2344 151 35 16 chr4 71338169 71338594 -112950068 - Tigger2a DNA MER2_type -1 433 1 5383 159 17 17 chr4 71338594 71338916 -112949746 + L1MC2 LINE L1 5911 6232 -112 10772 108 52 61 chr4 71338940 71340326 -112948336 + Tigger1 DNA MER2_type 30 1426 -992 1952 133 3 23 chr4 71340326 71340626 -112948036 - AluSg SINE Alu -16 294 1 10772 108 52 61 chr4 71340626 71340696 -112947966 + Tigger1 DNA MER2_type 1426 1495 -923 2310 117 3 0 chr4 71340696 71341005 -112947657 - AluSx SINE Alu -1 311 2 10772 108 52 61 chr4 71341005 71341525 -112947137 + Tigger1 DNA MER2_type 1495 1990 -428 1251 164 14 5 chr4 71341522 71341736 -112946926 + Tigger1 DNA MER2_type 2176 2391 -27 * 301 171 158 0 chr4 71341749 71341825 -112946837 + L1MC2 LINE L1 6257 6344 0 281 315 228 16 chr4 71341988 71342242 -112946420 - L2 LINE L2 -1067 2247 1940 311 336 96 57 chr4 71342242 71342522 -112946140 - L2 LINE L2 -1 3271 2981 353 188 125 0 chr4 71343086 71343182 -112945480 - L1MC5 LINE L1 -100 7861 7754 214 87 239 43 chr4 71343314 71343360 -112945302 - L2 LINE L2 -4 3268 3214 489 183 165 0 chr4 71343769 71343884 -112944778 - MER94 DNA DNA 0 134 1 183 80 0 0 chr4 71344072 71344097 -112944565 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 1442 211 11 0 chr4 71344099 71344378 -112944284 - AluJb SINE Alu -30 282 1 1466 169 103 7 chr4 71344592 71344865 -112943797 + AluJb SINE Alu 1 299 -13 34 24 0 0 chr4 71345392 71345433 -112943229 + AT_rich Low_complexity Low_complexity 1 41 0 376 341 190 7 chr4 71345442 71345732 -112942930 - L3 LINE CR1 -46 1531 1189 352 283 64 29 chr4 71345750 71345923 -112942739 + L1MC5 LINE L1 7619 7797 -164 272 333 62 16 chr4 71345979 71346108 -112942554 - L3 LINE CR1 -938 639 505 450 281 67 42 chr4 71346582 71346820 -112941842 - L3 LINE CR1 -5 1572 1329 265 373 92 44 chr4 71346809 71347037 -112941625 - L2 LINE L2 0 3272 3034 * 22 35 0 0 chr4 71347746 71347775 -112940887 + AT_rich Low_complexity Low_complexity 1 29 0 380 270 97 36 chr4 71347810 71348006 -112940656 - HAL1 LINE L1 -293 2214 2007 804 262 68 103 chr4 71348066 71348211 -112940451 - HAL1 LINE L1 -609 1898 1749 315 0 0 0 chr4 71348211 71348246 -112940416 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1968 143 0 0 chr4 71348251 71348530 -112940132 - AluSx SINE Alu -33 279 1 804 262 68 103 chr4 71348530 71348595 -112940067 - HAL1 LINE L1 -762 1745 1679 2198 103 36 3 chr4 71348595 71348897 -112939765 - AluSq SINE Alu -1 312 1 804 262 68 103 chr4 71348897 71349331 -112939331 - HAL1 LINE L1 -828 1679 1270 1835 149 18 0 chr4 71349361 71349642 -112939020 - AluSx SINE Alu -26 286 1 25 0 0 0 chr4 71349696 71349721 -112938941 + AT_rich Low_complexity Low_complexity 1 25 0 604 0 0 0 chr4 71350052 71350125 -112938537 + L1PA2 LINE L1 6080 6152 -3 289 313 67 33 chr4 71350472 71350622 -112938040 + MIR SINE MIR 31 185 -77 260 263 88 125 chr4 71351024 71351264 -112937398 + MIR SINE MIR 18 248 -14 2276 105 0 7 chr4 71351309 71351614 -112937048 + AluSx SINE Alu 2 304 -8 232 105 211 0 chr4 71352050 71352088 -112936574 + Tigger4(Zombi) DNA MER2_type 1 46 -2685 1251 150 44 36 chr4 71352106 71352183 -112936479 - L1MA2 LINE L1 -108 6196 6121 1819 168 3 23 chr4 71352183 71352320 -112936342 + AluJb SINE Alu 1 139 -173 2154 120 0 0 chr4 71352320 71352611 -112936051 + AluSq SINE Alu 1 291 -22 1819 168 3 23 chr4 71352611 71352783 -112935879 + AluJb SINE Alu 139 304 -8 1251 150 44 36 chr4 71352783 71352979 -112935683 - L1MA2 LINE L1 -183 6121 5921 1109 131 39 24 chr4 71352995 71353201 -112935461 - L1MA1 LINE L1 -324 5978 5770 414 61 0 0 chr4 71353201 71353250 -112935412 + Tigger4(Zombi) DNA MER2_type 2682 2730 -1 1077 119 12 18 chr4 71353271 71353439 -112935223 - AluJo/FRAM SINE Alu -9 303 137 437 145 0 0 chr4 71353439 71353508 -112935154 - AluJ/FLAM SINE Alu -243 69 1 26 50 0 0 chr4 71355861 71355901 -112932761 + AT_rich Low_complexity Low_complexity 1 40 0 279 0 0 0 chr4 71355978 71356009 -112932653 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 626 238 13 7 chr4 71356249 71356400 -112932262 - L1ME3 LINE L1 0 6162 6011 2381 83 3 13 chr4 71356400 71356712 -112931950 - AluSx SINE Alu -3 309 1 701 201 50 0 chr4 71357102 71357241 -112931421 + FRAM SINE Alu 1 146 -30 366 309 91 29 chr4 71357276 71357519 -112931143 - L1M4 LINE L1 -1090 5056 4799 33 43 0 0 chr4 71357679 71357726 -112930936 + AT_rich Low_complexity Low_complexity 1 47 0 2011 111 0 4 chr4 71357726 71357997 -112930665 - AluSx SINE Alu -22 290 21 320 335 38 5 chr4 71357998 71358207 -112930455 - L1M4 LINE L1 -1558 4588 4373 180 0 0 0 chr4 71358896 71358916 -112929746 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 216 191 0 0 chr4 71359232 71359279 -112929383 + T-rich Low_complexity Low_complexity 1 47 0 2165 85 41 17 chr4 71360024 71360317 -112928345 - AluSx SINE Alu -12 300 1 207 195 146 0 chr4 71361416 71361457 -112927205 - L2 LINE L2 -8 3264 3218 1851 131 20 27 chr4 71361904 71362202 -112926460 - AluSq SINE Alu -17 296 1 441 30 30 0 chr4 71362812 71362879 -112925783 - AluSp/q SINE Alu -2 311 243 2351 89 0 22 chr4 71362879 71363192 -112925470 + AluSp SINE Alu 1 306 -7 2451 75 3 7 chr4 71363446 71363753 -112924909 + AluSq SINE Alu 1 306 -7 22 0 0 0 chr4 71363839 71363861 -112924801 + AT_rich Low_complexity Low_complexity 1 22 0 344 289 247 5 chr4 71364494 71364578 -112924084 + MIR SINE MIR 2 64 -198 578 235 27 55 chr4 71364578 71364761 -112923901 - MER5B DNA MER1_type 0 178 1 344 289 247 5 chr4 71364761 71364870 -112923792 + MIR SINE MIR 64 242 -20 2131 110 3 13 chr4 71365505 71365806 -112922856 + AluSx SINE Alu 1 298 -14 366 315 125 22 chr4 71365814 71365998 -112922664 + MIR SINE MIR 23 225 -37 1907 136 27 7 chr4 71366069 71366364 -112922298 - AluSx SINE Alu -11 301 1 200 228 18 0 chr4 71367373 71367430 -112921232 + CT-rich Low_complexity Low_complexity 3 60 0 238 122 14 176 chr4 71368158 71368232 -112920430 - MER20 DNA MER1_type -157 62 1 1140 295 44 28 chr4 71368264 71368762 -112919900 - HAL1 LINE L1 -1910 597 92 207 186 0 0 chr4 71368763 71368806 -112919856 + CT-rich Low_complexity Low_complexity 4 46 0 282 254 0 0 chr4 71368834 71368897 -112919765 - HAL1 LINE L1 -2443 64 2 300 187 13 27 chr4 71369346 71369421 -112919241 - MLT1E-int LTR MaLR -506 865 792 * 3059 159 50 5 chr4 71369404 71370007 -112918655 - MLT1E-int LTR MaLR -733 638 9 2110 107 0 28 chr4 71370768 71371096 -112917566 - AluSc SINE Alu 0 320 1 2182 122 0 19 chr4 71371198 71371517 -112917145 - AluSq SINE Alu 0 313 1 2275 85 10 7 chr4 71372891 71373185 -112915477 + AluSq SINE Alu 3 297 -16 1408 220 20 0 chr4 71375208 71375512 -112913150 + MLT1A1 LTR MaLR 49 358 -7 357 188 62 0 chr4 71375893 71375957 -112912705 - L2 LINE L2 -55 3258 3191 2214 112 90 48 chr4 71375962 71376020 -112912642 - L1M1 LINE L1 -4268 3297 3243 2083 118 13 3 chr4 71376020 71376325 -112912337 - AluSx SINE Alu -4 308 1 2214 112 90 48 chr4 71376325 71376723 -112911939 - L1M1 LINE L1 -4322 3243 2822 1357 256 23 50 chr4 71376726 71377168 -112911494 - MLT1E LTR MaLR -134 459 30 2191 127 3 10 chr4 71377405 71377719 -112910943 + AluSx SINE Alu 1 312 0 353 296 164 31 chr4 71377773 71377999 -112910663 + L2 LINE L2 2212 2467 -847 1370 176 64 39 chr4 71378103 71378433 -112910229 + MLT1E LTR MaLR 256 593 0 771 116 47 16 chr4 71378482 71378611 -112910051 - FLAM_C SINE Alu 0 133 1 213 266 0 31 chr4 71378639 71378703 -112909959 - L3 LINE CR1 -173 1404 1343 2216 99 10 3 chr4 71378977 71379269 -112909393 + AluSx SINE Alu 1 294 -18 268 265 219 23 chr4 71379289 71379508 -112909154 - L3 LINE CR1 -580 997 736 1068 297 114 21 chr4 71380234 71380753 -112907909 - L2 LINE L2 -1478 1836 1270 233 193 0 18 chr4 71380939 71380996 -112907666 - LTR65 LTR ERV1 -283 386 331 444 210 9 119 chr4 71381389 71381608 -112907054 - MLT1L LTR MaLR -377 238 44 322 200 141 0 chr4 71381641 71381726 -112906936 + MIR SINE MIR 92 188 -74 1975 59 17 0 chr4 71381735 71381971 -112906691 - AluY SINE Alu -13 298 59 1090 172 33 24 chr4 71381972 71382344 -112906318 + L1MC/D LINE L1 5152 5525 -743 563 106 11 53 chr4 71383694 71383788 -112904874 + FLAM_C SINE Alu 36 125 -18 21 36 0 0 chr4 71383790 71383818 -112904844 + AT_rich Low_complexity Low_complexity 1 28 0 1603 181 22 4 chr4 71383822 71384092 -112904570 + AluJo SINE Alu 6 280 -32 403 20 0 0 chr4 71384092 71384141 -112904521 + U2 snRNA snRNA 4 52 -136 3540 108 87 32 chr4 71384925 71385309 -112903353 - MER39B LTR ERV1 0 653 221 2369 91 10 3 chr4 71385309 71385617 -112903045 - AluSq SINE Alu -3 310 1 3540 108 87 32 chr4 71385617 71385851 -112902811 - MER39B LTR ERV1 -432 221 1 23 0 0 0 chr4 71385922 71385945 -112902717 + AT_rich Low_complexity Low_complexity 1 23 0 1781 159 7 33 chr4 71385946 71386248 -112902414 - AluJo SINE Alu -18 294 1 2267 100 33 0 chr4 71386786 71387087 -112901575 + AluSp SINE Alu 1 311 -2 711 248 76 30 chr4 71387643 71388128 -112900534 + MER34 LTR ERV1 1 542 0 593 268 73 39 chr4 71388148 71388353 -112900309 - L2 LINE L2 0 3313 3102 796 68 0 62 chr4 71388712 71388904 -112899758 + (TA)n Simple_repeat Simple_repeat 1 180 0 1870 164 7 0 chr4 71388904 71389191 -112899471 - AluJo SINE Alu -23 289 1 843 273 63 29 chr4 71389831 71390069 -112898593 - MIR SINE MIR -10 252 7 251 287 20 54 chr4 71390090 71390175 -112898487 - MIR SINE MIR -63 145 74 2290 81 10 10 chr4 71390175 71390473 -112898189 + AluSg SINE Alu 1 298 -12 251 287 20 54 chr4 71390473 71390512 -112898150 - MIR SINE MIR -134 74 35 959 232 82 17 chr4 71390542 71390775 -112897887 - MIR SINE MIR 0 262 15 591 234 68 60 chr4 71390963 71391118 -112897544 + MLT1I LTR MaLR 85 244 -165 1763 169 0 17 chr4 71391118 71391413 -112897249 - AluJb SINE Alu -22 290 1 591 234 68 60 chr4 71391413 71391509 -112897153 + MLT1I LTR MaLR 244 338 -71 331 262 23 28 chr4 71391616 71391658 -112897004 + L1ME4a LINE L1 5668 5709 -412 1087 43 0 134 chr4 71391658 71391789 -112896873 - L1PA8 LINE L1 0 6172 6072 2180 48 62 17 chr4 71391789 71392078 -112896584 - AluY SINE Alu -9 302 1 1087 43 0 134 chr4 71392078 71392133 -112896529 - L1PA8 LINE L1 -100 6072 6011 331 262 23 28 chr4 71392133 71392280 -112896382 + L1ME4a LINE L1 5709 5853 -268 23 68 0 0 chr4 71392306 71392350 -112896312 + AT_rich Low_complexity Low_complexity 1 44 0 2207 78 25 0 chr4 71392490 71392773 -112895889 + AluSp SINE Alu 1 290 -23 333 0 0 0 chr4 71393029 71393066 -112895596 + (TA)n Simple_repeat Simple_repeat 2 38 0 2256 131 0 0 chr4 71393066 71393372 -112895290 - AluSx SINE Alu -4 308 3 1524 249 81 51 chr4 71393384 71393925 -112894737 - MLT1E LTR MaLR -8 509 1 238 288 108 54 chr4 71394004 71394115 -112894547 + MIR SINE MIR 36 152 -56 3570 117 0 4 chr4 71394132 71394645 -112894017 - MER9 LTR ERVK 0 511 1 322 217 19 66 chr4 71394753 71394819 -112893843 + L1ME LINE L1 5549 5610 -511 2037 199 87 30 chr4 71394819 71395311 -112893351 + MLT2B1 LTR ERVL 1 520 0 322 217 19 66 chr4 71395311 71395350 -112893312 + L1ME LINE L1 5610 5649 -472 347 82 0 0 chr4 71395510 71395559 -112893103 + MER4B LTR ERV1 562 610 0 2310 148 71 41 chr4 71395562 71396213 -112892449 + MER4B-int LTR ERV1 1 847 -5751 1358 121 65 0 chr4 71396215 71396414 -112892248 + AluJo SINE Alu 1 212 -100 229 246 0 0 chr4 71396433 71396490 -112892172 + AluSc SINE Alu 206 262 -37 213 39 0 0 chr4 71396491 71396517 -112892145 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3600 142 28 12 chr4 71396956 71397560 -112891102 + LTR31 LTR ERV1 3 616 -3 2101 91 0 7 chr4 71397674 71397948 -112890714 + AluSq SINE Alu 1 272 -41 2000 125 0 0 chr4 71398052 71398324 -112890338 + AluSx SINE Alu 26 297 -15 651 217 106 113 chr4 71398363 71398506 -112890156 + MLT1C LTR MaLR 65 208 -259 1701 163 53 69 chr4 71398506 71398943 -112889719 + MSTB1 LTR MaLR 1 430 -2 651 217 106 113 chr4 71398943 71398959 -112889703 + MLT1C LTR MaLR 208 223 -244 2234 118 0 0 chr4 71398959 71399255 -112889407 + AluSx SINE Alu 3 298 -14 651 217 106 113 chr4 71399255 71399500 -112889162 + MLT1C LTR MaLR 223 467 0 22 56 0 0 chr4 71399950 71399986 -112888676 + AT_rich Low_complexity Low_complexity 1 36 0 1717 178 13 10 chr4 71400239 71400542 -112888120 - AluJb SINE Alu -8 304 1 1868 157 97 11 chr4 71400767 71401201 -112887461 - LTR54B LTR ERV1 -4 494 24 515 84 72 0 chr4 71401201 71401284 -112887378 - LTR54B LTR ERV1 -409 89 1 2382 61 3 7 chr4 71401939 71402232 -112886430 + AluSp SINE Alu 1 292 -21 3383 103 127 20 chr4 71402366 71402778 -112885884 - MER39B LTR ERV1 0 653 158 2381 72 3 20 chr4 71402778 71403083 -112885579 + AluSg SINE Alu 2 301 -9 3383 103 127 20 chr4 71403083 71403260 -112885402 - MER39B LTR ERV1 -495 158 1 252 139 23 0 chr4 71403380 71403423 -112885239 - Alu SINE Alu -255 46 3 228 50 50 25 chr4 71403973 71404013 -112884649 + L1MB8 LINE L1 6044 6084 -94 1664 129 26 62 chr4 71404015 71404193 -112884469 - MER46B DNA MER2_type -2495 236 199 2383 90 0 0 chr4 71404193 71404492 -112884170 - AluSp SINE Alu -12 301 3 1664 129 26 62 chr4 71404492 71404653 -112884009 - MER46B DNA MER2_type -2532 199 34 2022 131 7 0 chr4 71404653 71404943 -112883719 - AluSx SINE Alu -20 292 1 374 152 0 0 chr4 71404943 71405009 -112883653 + L1MB8 LINE L1 6111 6176 -2 664 262 95 9 chr4 71405106 71405327 -112883335 + MIR SINE MIR 20 259 -3 499 184 166 25 chr4 71405774 71405937 -112882725 - MER53 DNA DNA 0 189 4 714 232 0 40 chr4 71406918 71407095 -112881567 + MIR SINE MIR 92 261 -1 285 213 0 49 chr4 71407208 71407269 -112881393 + L2 LINE L2 3251 3308 -5 2005 139 0 19 chr4 71407285 71407601 -112881061 + AluJb SINE Alu 1 310 -2 1044 165 0 6 chr4 71407805 71407969 -112880693 + AluJb SINE Alu 135 297 -15 1743 171 0 33 chr4 71407983 71408287 -112880375 + AluJo SINE Alu 6 299 -13 341 310 153 9 chr4 71408538 71408754 -112879908 - MIR SINE MIR -6 256 10 1938 164 3 3 chr4 71408822 71409134 -112879528 + AluJb SINE Alu 1 312 0 2143 139 0 7 chr4 71409434 71409743 -112878919 + AluSx SINE Alu 1 307 -5 2120 91 7 14 chr4 71409840 71410150 -112878512 + AluSp SINE Alu 1 308 0 500 164 157 37 chr4 71410331 71410465 -112878197 - MLT1H1 LTR MaLR 0 555 406 728 153 0 0 chr4 71410505 71410629 -112878033 + Charlie1 DNA MER1_type 2632 2755 -6 880 222 150 102 chr4 71410709 71411069 -112877593 - L2 LINE L2 -733 2581 2240 2416 65 0 0 chr4 71411069 71411362 -112877300 + AluY SINE Alu 1 293 -18 880 222 150 102 chr4 71411362 71411428 -112877234 - L2 LINE L2 -1069 2245 2133 1822 98 0 4 chr4 71411428 71411664 -112876998 + AluSx SINE Alu 1 235 -77 345 169 39 39 chr4 71411695 71411772 -112876890 - L2 LINE L2 -1317 1997 1921 737 329 64 39 chr4 71411810 71412434 -112876228 - L2 LINE L2 -417 2897 2258 253 176 0 20 chr4 71412762 71412813 -112875849 + MER5B DNA MER1_type 12 61 -117 615 203 0 0 chr4 71412814 71412947 -112875715 + L1MA7 LINE L1 5397 5529 -762 533 169 0 0 chr4 71412948 71413031 -112875631 + AluJ/FLAM SINE Alu 3 85 -227 2384 147 14 50 chr4 71413031 71413515 -112875147 + L1MA7 LINE L1 5807 6275 -16 1583 172 7 35 chr4 71413515 71413805 -112874857 + AluJo SINE Alu 1 314 0 289 0 0 0 chr4 71413805 71413837 -112874825 + (TAA)n Simple_repeat Simple_repeat 1 180 0 2384 147 14 50 chr4 71413837 71413853 -112874809 + L1MA7 LINE L1 6275 6290 -1 393 252 39 31 chr4 71413871 71413998 -112874664 - MER5B DNA MER1_type -50 128 1 323 169 17 0 chr4 71415149 71415208 -112873454 + MER5A DNA MER1_type 9 68 -121 918 103 45 7 chr4 71415227 71415382 -112873280 - L1MB3 LINE L1 0 6183 6023 2335 114 0 3 chr4 71415392 71415700 -112872962 - AluSx SINE Alu -5 307 1 196 245 19 0 chr4 71415711 71415764 -112872898 + MER5A DNA MER1_type 136 189 0 477 274 147 0 chr4 71415798 71415988 -112872674 - MIR SINE MIR -24 238 21 2505 74 0 13 chr4 71416001 71416312 -112872350 - AluSg SINE Alu -3 307 1 1384 162 0 0 chr4 71416313 71416523 -112872139 - AluJb SINE Alu -16 296 87 1161 171 90 26 chr4 71417295 71417529 -112871133 - AluJo SINE Alu -63 249 1 505 219 150 44 chr4 71417584 71417744 -112870918 - MER5B DNA MER1_type -1 177 1 984 219 9 82 chr4 71417953 71418090 -112870572 - MER93b LTR ERV1 0 373 228 2337 104 7 0 chr4 71418090 71418399 -112870263 - AluSq SINE Alu -2 311 1 984 219 9 82 chr4 71418399 71418604 -112870058 - MER93b LTR ERV1 -145 228 75 265 239 0 109 chr4 71418730 71418822 -112869840 - MIR SINE MIR -111 151 70 566 193 190 74 chr4 71418973 71419158 -112869504 - L1MC5 LINE L1 -46 7915 7688 2219 106 7 3 chr4 71419158 71419460 -112869202 + AluSq SINE Alu 1 303 -10 566 193 190 74 chr4 71419460 71419543 -112869119 - L1MC5 LINE L1 -273 7688 7616 23 0 0 0 chr4 71419556 71419579 -112869083 + AT_rich Low_complexity Low_complexity 1 23 0 2298 106 0 3 chr4 71419581 71419884 -112868778 + AluSq SINE Alu 1 302 -11 999 170 0 0 chr4 71419885 71420073 -112868589 + AluSg/x SINE Alu 130 317 0 1169 199 25 25 chr4 71420130 71420406 -112868256 - L1MC5 LINE L1 -386 7575 7300 1494 166 114 0 chr4 71420418 71420689 -112867973 - AluSx SINE Alu 0 302 1 1914 106 77 15 chr4 71421175 71421449 -112867213 - AluSx SINE Alu -21 291 1 376 263 48 48 chr4 71421699 71421908 -112866754 - L1MC/D LINE L1 -2000 5808 5600 2276 98 9 22 chr4 71422655 71422971 -112865691 + AluSx SINE Alu 1 312 0 2061 87 63 14 chr4 71423109 71423395 -112865267 + AluSq SINE Alu 1 300 -13 343 370 17 17 chr4 71424120 71424301 -112864361 + MIR SINE MIR 2 182 -80 2222 92 0 16 chr4 71424380 71424720 -112863942 - AluSx SINE Alu 0 312 1 1934 161 7 0 chr4 71424963 71425267 -112863395 - AluJb SINE Alu -2 310 5 240 35 0 0 chr4 71425791 71425820 -112862842 + (TTTC)n Simple_repeat Simple_repeat 4 32 0 399 234 75 0 chr4 71426099 71426206 -112862456 - MER103 DNA DNA -2 164 50 1932 141 3 7 chr4 71427325 71427654 -112861008 + AluSx SINE Alu 1 328 0 882 96 0 0 chr4 71427788 71427903 -112860759 - AluSg/x SINE Alu -4 306 192 22 0 0 0 chr4 71428685 71428707 -112859955 + AT_rich Low_complexity Low_complexity 1 22 0 2143 97 3 42 chr4 71429069 71429377 -112859285 + AluSg SINE Alu 1 296 -14 275 305 26 71 chr4 71429396 71429550 -112859112 - MIR SINE MIR -70 192 46 1181 94 0 0 chr4 71429597 71429812 -112858850 - AluSg/x SINE Alu 0 351 137 318 169 131 9 chr4 71430010 71430088 -112858574 + AluS SINE Alu 2 73 -229 * 1067 172 63 88 chr4 71430084 71430253 -112858409 + MLT1F1 LTR MaLR 97 269 -273 1726 133 14 38 chr4 71430253 71430546 -112858116 + AluJo SINE Alu 27 312 0 1067 172 63 88 chr4 71430546 71430700 -112857962 + MLT1F1 LTR MaLR 269 465 -77 2199 101 7 17 chr4 71430700 71430997 -112857665 + AluSx SINE Alu 1 294 -18 1067 172 63 88 chr4 71430997 71431074 -112857588 + MLT1F1 LTR MaLR 465 542 0 824 249 183 18 chr4 71431080 71431582 -112857080 + MLT1F1-int LTR MaLR 4 588 -783 265 309 63 16 chr4 71431739 71431930 -112856732 + L1ME LINE L1 5352 5551 -611 2341 100 3 7 chr4 71432010 71432311 -112856351 - AluSx SINE Alu -12 300 1 1976 111 39 4 chr4 71432432 71432711 -112855951 - AluSx SINE Alu -23 289 1 715 228 119 27 chr4 71433671 71433965 -112854697 - HsTC2b DNA Tc2 -31 887 567 557 101 8 18 chr4 71433970 71434227 -112854435 + AluSx SINE Alu 1 311 -1 1359 173 99 42 chr4 71434237 71434520 -112854142 + AluJo SINE Alu 1 299 -13 519 200 111 30 chr4 71434562 71434697 -112853965 + L1ME3A LINE L1 6020 6165 -5 330 242 81 0 chr4 71434706 71434805 -112853857 - HsTC2b DNA Tc2 -542 376 270 415 168 200 16 chr4 71434810 71434935 -112853727 - HsTC2b DNA Tc2 -755 160 13 1010 196 77 0 chr4 71434944 71435138 -112853524 - AluJb SINE Alu -17 295 87 2028 111 0 0 chr4 71435176 71435437 -112853225 + AluSq SINE Alu 1 261 -52 253 247 0 55 chr4 71435557 71435630 -112853032 - L1ME LINE L1 -306 5815 5747 1733 85 167 19 chr4 71436978 71437248 -112851414 + AluSp SINE Alu 1 310 -3 198 0 0 0 chr4 71437653 71437675 -112850987 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 26 0 0 0 chr4 71439436 71439462 -112849200 + AT_rich Low_complexity Low_complexity 1 26 0 321 245 27 54 chr4 71439712 71439859 -112848803 + MIR SINE MIR 116 258 -4 1309 164 99 10 chr4 71440231 71440543 -112848119 + MER33 DNA MER1_type 1 324 0 2486 65 0 13 chr4 71441643 71441949 -112846713 + AluY SINE Alu 1 302 -9 1645 144 0 84 chr4 71441952 71442137 -112846525 + AluJb SINE Alu 16 168 -144 6996 70 26 0 chr4 71442137 71443011 -112845651 + MER11D LTR ERVK 1 897 0 1645 144 0 84 chr4 71443011 71443123 -112845539 + AluJb SINE Alu 168 288 -24 210 333 115 0 chr4 71443734 71443821 -112844841 - L2 LINE L2 -6 3307 3211 192 40 0 0 chr4 71443943 71443968 -112844694 + (T)n Simple_repeat Simple_repeat 1 25 0 374 169 0 0 chr4 71444310 71444375 -112844287 + L1ME2 LINE L1 6043 6107 -57 2071 134 7 0 chr4 71444375 71444673 -112843989 + AluSx SINE Alu 1 300 -12 247 173 0 67 chr4 71444697 71444772 -112843890 + L1ME2 LINE L1 6092 6161 -3 2590 68 0 3 chr4 71446363 71446674 -112841988 + AluY SINE Alu 1 310 -1 181 286 24 12 chr4 71446683 71446767 -112841895 + L2 LINE L2 2445 2529 -785 1976 152 7 0 chr4 71446869 71447165 -112841497 + AluSx SINE Alu 1 298 -14 1958 147 10 7 chr4 71447323 71447630 -112841032 + AluJb SINE Alu 1 308 -4 197 260 0 0 chr4 71447643 71447693 -112840969 + L2 LINE L2 2595 2644 -670 339 230 32 62 chr4 71447736 71447893 -112840769 + MLT1J LTR MaLR 3 158 -353 1725 182 13 7 chr4 71448723 71449030 -112839632 + AluJb SINE Alu 4 312 0 2354 91 3 10 chr4 71449049 71449452 -112839210 + AluSp SINE Alu 1 401 0 688 226 141 15 chr4 71449507 71449672 -112838990 + MER5C DNA MER1_type 20 163 -161 705 80 0 0 chr4 71449672 71449772 -112838890 - L1PA14 LINE L1 0 6161 6062 688 226 141 15 chr4 71449772 71449876 -112838786 + MER5C DNA MER1_type 163 323 -1 560 213 0 0 chr4 71450775 71450883 -112837779 - AluSc SINE Alu -11 298 191 393 250 46 66 chr4 71451157 71451309 -112837353 + Charlie8 DNA MER1_type 12 160 -2257 2176 88 10 10 chr4 71451830 71452124 -112836538 - AluSc SINE Alu -15 294 1 314 292 83 2 chr4 71452197 71452379 -112836283 - MIR SINE MIR -10 252 24 1821 161 0 65 chr4 71452676 71452801 -112835861 + AluJb SINE Alu 1 133 -179 2369 92 0 7 chr4 71452801 71453095 -112835567 - AluSc SINE Alu -16 293 2 2245 112 0 0 chr4 71453099 71453394 -112835268 - AluSg SINE Alu -15 295 1 1821 161 0 65 chr4 71453394 71453587 -112835075 + AluJb SINE Alu 136 303 -9 327 245 78 59 chr4 71453701 71453803 -112834859 + MLT1J LTR MaLR 310 413 -98 212 283 236 0 chr4 71453890 71453996 -112834666 + L3 LINE CR1 1389 1519 -58 200 298 106 0 chr4 71454154 71454248 -112834414 + L2 LINE L2 3202 3305 -8 372 301 16 52 chr4 71454426 71454534 -112834128 - MER117 DNA MER1_type -5 192 93 1178 184 180 8 chr4 71454534 71454789 -112833873 - AluJo SINE Alu -3 299 1 372 301 16 52 chr4 71454789 71454873 -112833789 - MER117 DNA MER1_type -104 93 7 467 194 48 48 chr4 71455290 71455455 -112833207 + L1ME4a LINE L1 5946 6110 -11 2459 85 0 0 chr4 71455533 71455839 -112832823 + AluY SINE Alu 1 306 -5 1908 128 14 17 chr4 71455844 71456141 -112832521 + AluSq SINE Alu 1 296 -17 2071 110 24 7 chr4 71456144 71456436 -112832226 + AluSx SINE Alu 1 297 -15 811 146 15 0 chr4 71457314 71457444 -112831218 - FLAM_C SINE Alu -1 132 1 21 0 0 0 chr4 71457555 71457576 -112831086 + AT_rich Low_complexity Low_complexity 1 21 0 935 129 7 7 chr4 71457580 71457719 -112830943 + AluJb SINE Alu 1 139 -173 2309 92 0 3 chr4 71457726 71458020 -112830642 + AluSg SINE Alu 1 293 -17 1061 158 17 6 chr4 71458558 71458735 -112829927 + AluSg/x SINE Alu 119 297 -13 321 226 44 107 chr4 71459246 71459338 -112829324 - Charlie8 DNA MER1_type -181 160 81 2545 50 3 0 chr4 71459338 71459638 -112829024 + AluY SINE Alu 1 301 -10 321 226 44 107 chr4 71459638 71459704 -112828958 - Charlie8 DNA MER1_type -260 81 12 1371 222 139 27 chr4 71460750 71460927 -112827735 + L2 LINE L2 2533 2689 -624 2224 116 0 3 chr4 71460927 71461229 -112827433 + AluY SINE Alu 1 301 -10 1371 222 139 27 chr4 71461229 71461736 -112826926 + L2 LINE L2 2689 3312 -1 1536 195 17 10 chr4 71462206 71462503 -112826159 + AluJb SINE Alu 1 299 -13 2031 142 16 10 chr4 71462898 71463208 -112825454 + AluSx SINE Alu 1 312 0 430 281 22 24 chr4 71463243 71463488 -112825174 + LTR16C LTR ERVL 188 479 -12 461 221 115 8 chr4 71464382 71464504 -112824158 + MIR3 SINE MIR 28 162 -46 1856 130 0 0 chr4 71465213 71465474 -112823188 + AluSq SINE Alu 1 261 -52 246 32 0 0 chr4 71465485 71465516 -112823146 + (CA)n Simple_repeat Simple_repeat 2 32 0 185 329 25 81 chr4 71465548 71465709 -112822953 - MER5A DNA MER1_type -21 168 17 * 381 336 0 36 chr4 71465571 71465711 -112822951 + MER5A DNA MER1_type 55 189 0 532 331 35 17 chr4 71466428 71466718 -112821944 + L1MEd LINE L1 46 340 -5779 1195 176 3 105 chr4 71466971 71467144 -112821518 - AluJo SINE Alu -31 281 92 2258 77 0 3 chr4 71467144 71467441 -112821221 + AluSx SINE Alu 2 297 -15 2056 92 7 0 chr4 71467448 71467740 -112820922 + AluSx SINE Alu 1 294 -18 1195 176 3 105 chr4 71467740 71467871 -112820791 - AluJo SINE Alu -226 86 1 232 250 0 0 chr4 71467930 71467986 -112820676 + L2 LINE L2 2921 2976 -337 212 355 132 47 chr4 71468477 71468868 -112819794 + L2 LINE L2 1543 1900 -1414 1487 87 142 32 chr4 71468868 71469148 -112819514 - AluY SINE Alu 0 308 1 212 355 132 47 chr4 71469148 71469477 -112819185 + L2 LINE L2 1900 2325 -989 1759 107 48 19 chr4 71469500 71469793 -112818869 + AluSg SINE Alu 1 301 0 3733 111 0 4 chr4 71469814 71470327 -112818335 - MER9 LTR ERVK 0 511 1 645 302 85 58 chr4 71470375 71470703 -112817959 + L2 LINE L2 2931 3267 -5 4021 143 13 16 chr4 71470715 71471417 -112817245 - L1MA6 LINE L1 -1 6299 5600 181 299 92 35 chr4 71471955 71472042 -112816620 + MIR3 SINE MIR 89 180 -28 192 333 53 0 chr4 71472552 71472666 -112815996 + MIR SINE MIR 109 228 -34 324 300 113 48 chr4 71472748 71473041 -112815621 + L1MC4a LINE L1 5732 6045 -76 2101 115 0 16 chr4 71473231 71473536 -112815126 + AluSx SINE Alu 1 300 -12 1098 175 0 17 chr4 71473813 71473990 -112814672 + FAM SINE Alu 1 174 -1 1884 120 7 7 chr4 71475016 71475327 -112813335 - AluSx SINE Alu 0 311 1 226 300 73 88 chr4 71475721 71475994 -112812668 + L1MC/D LINE L1 5474 5742 -2066 1855 215 146 20 chr4 71476010 71476504 -112812158 + MER74A LTR ERVL 2 557 -1 2151 85 4 0 chr4 71476673 71476954 -112811708 - AluSp SINE Alu -17 296 15 37 0 0 21 chr4 71477048 71477073 -112811589 + AT_rich Low_complexity Low_complexity 1 26 -21 1588 154 43 11 chr4 71477073 71477352 -112811310 - AluJb SINE Alu -24 288 1 37 0 0 21 chr4 71477352 71477374 -112811288 + AT_rich Low_complexity Low_complexity 26 47 0 207 0 0 0 chr4 71477378 71477401 -112811261 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 462 167 4 6 chr4 71477403 71477654 -112811008 + AluSx SINE Alu 1 297 -14 22 0 0 0 chr4 71477661 71477683 -112810979 + AT_rich Low_complexity Low_complexity 1 22 0 323 80 40 0 chr4 71477704 71477754 -112810908 - L1MB1 LINE L1 -1 6167 6116 1476 196 7 20 chr4 71477755 71477993 -112810669 - AluJb SINE Alu -20 292 57 3870 152 115 21 chr4 71477993 71478748 -112809914 + LTR1B LTR ERV1 1 826 0 1476 196 7 20 chr4 71478748 71478805 -112809857 - AluJb SINE Alu -255 57 1 1292 162 117 4 chr4 71478805 71479052 -112809610 - L1MB1 LINE L1 -39 6129 5855 445 181 6 103 chr4 71479052 71479129 -112809533 + MER34C LTR ERV1 1 76 -493 2267 78 0 0 chr4 71479129 71479425 -112809237 + AluY SINE Alu 1 296 -15 445 181 6 103 chr4 71479425 71479458 -112809204 + MER34C LTR ERV1 76 111 -458 2259 100 0 0 chr4 71479462 71479763 -112808899 + AluSq SINE Alu 1 301 -12 1532 162 0 36 chr4 71479777 71480055 -112808607 + AluSx SINE Alu 9 276 -36 254 91 0 0 chr4 71480056 71480089 -112808573 + Alu SINE Alu 242 274 -27 970 133 0 0 chr4 71480089 71480232 -112808430 + AluJo/FRAM SINE Alu 158 300 -12 673 212 7 29 chr4 71480237 71480368 -112808294 + MER34B LTR ERV1 143 270 -295 2264 154 30 60 chr4 71480368 71480784 -112807878 - MER65C LTR ERV1 0 461 59 1158 155 167 24 chr4 71480784 71481036 -112807626 - AluJo SINE Alu -14 288 1 2264 154 30 60 chr4 71481036 71481087 -112807575 - MER65C LTR ERV1 -402 59 8 2078 117 0 7 chr4 71481087 71481387 -112807275 - AluSq SINE Alu -15 298 1 1027 128 61 118 chr4 71481400 71481729 -112806933 + MER34B LTR ERV1 256 565 0 1410 177 23 47 chr4 71481740 71481914 -112806748 - AluJo SINE Alu -16 296 130 2195 87 28 0 chr4 71481914 71482201 -112806461 - AluSg SINE Alu -15 295 1 1410 177 23 47 chr4 71482201 71482326 -112806336 - AluJo SINE Alu -182 130 4 564 96 0 0 chr4 71482331 71482414 -112806248 - L1M3 LINE L1 -345 5823 5741 1116 169 13 7 chr4 71482415 71482622 -112806040 - MER34 LTR ERV1 -344 198 1 303 278 93 19 chr4 71482624 71482786 -112805876 + L1MEc LINE L1 1251 1424 -4972 851 167 0 20 chr4 71482804 71482954 -112805708 - LTR7 LTR ERV1 0 450 304 882 131 8 18 chr4 71483157 71483324 -112805338 - LTR7 LTR ERV1 -232 218 2 2191 179 78 118 chr4 71483324 71484078 -112804584 - LTR8A LTR ERV1 -3 724 1 2320 76 0 3 chr4 71484270 71484573 -112804089 + AluSg SINE Alu 1 302 -8 1234 170 5 0 chr4 71484576 71484782 -112803880 + AluSg/x SINE Alu 87 293 -19 748 212 58 28 chr4 71485017 71485456 -112803206 + MER4C LTR ERV1 32 465 0 1860 137 10 17 chr4 71486376 71486676 -112801986 - AluSx SINE Alu -14 298 1 275 238 267 0 chr4 71487093 71487198 -112801464 - MER115 DNA AcHobo -62 631 499 1109 119 24 0 chr4 71487199 71487367 -112801295 + AluSg/x SINE Alu 130 301 -9 599 273 88 73 chr4 71487536 71487796 -112800866 - MER115 DNA AcHobo -423 270 7 306 275 0 0 chr4 71488473 71488553 -112800109 + L1ME LINE L1 5590 5669 -452 29 70 0 0 chr4 71488710 71488767 -112799895 + AT_rich Low_complexity Low_complexity 1 57 0 2201 96 30 0 chr4 71488773 71489076 -112799586 - AluSx SINE Alu 0 312 1 470 246 126 70 chr4 71489201 71489400 -112799262 - MER63A DNA MER1_type 0 210 1 2009 135 0 3 chr4 71489459 71489763 -112798899 - AluSx SINE Alu -9 303 1 195 139 0 0 chr4 71489774 71489810 -112798852 + (A)n Simple_repeat Simple_repeat 1 36 0 231 245 206 0 chr4 71490064 71490166 -112798496 - MER115 DNA AcHobo -70 623 501 2190 88 0 7 chr4 71490169 71490466 -112798196 + AluY SINE Alu 1 295 -16 256 225 205 66 chr4 71490476 71490627 -112798035 + L2 LINE L2 3081 3252 -61 944 103 0 22 chr4 71490859 71490995 -112797667 + FLAM_C SINE Alu 1 133 0 1958 132 7 0 chr4 71491111 71491399 -112797263 - AluSx SINE Alu -22 290 1 2223 67 14 0 chr4 71491544 71491827 -112796835 - AluY SINE Alu -16 295 9 248 267 233 0 chr4 71492487 71492577 -112796085 - MIR SINE MIR -61 147 37 341 290 57 119 chr4 71493495 71493881 -112794781 - L2 LINE L2 0 3272 2911 862 289 62 15 chr4 71493904 71494240 -112794422 + Charlie2b DNA MER1_type 13 364 -2498 925 109 0 0 chr4 71494328 71494456 -112794206 + AluSg/x SINE Alu 174 301 -9 2752 116 5 3 chr4 71494458 71494847 -112793815 + MER39B LTR ERV1 264 653 0 609 254 79 0 chr4 71494847 71495012 -112793650 + Charlie2b DNA MER1_type 488 665 -2117 273 200 0 0 chr4 71495039 71495084 -112793578 + L1MB7 LINE L1 5995 6039 -145 602 217 31 0 chr4 71495135 71495264 -112793398 - FLAM_A SINE Alu 0 133 1 1666 150 284 18 chr4 71495264 71495348 -112793314 - Tigger7 DNA MER2_type -2006 481 421 2209 181 54 82 chr4 71495348 71495592 -112793070 + LTR9 LTR ERV1 1 250 -362 2088 118 0 3 chr4 71495592 71495896 -112792766 - AluSg SINE Alu -7 303 1 2209 181 54 82 chr4 71495896 71496281 -112792381 + LTR9 LTR ERV1 250 612 0 1666 150 284 18 chr4 71496281 71496576 -112792086 - Tigger7 DNA MER2_type -2066 421 1 1914 115 19 0 chr4 71496785 71497054 -112791608 + MER67A LTR ERV1 1 274 -269 810 101 0 8 chr4 71497055 71497174 -112791488 - AluY SINE Alu -18 293 176 1665 83 0 0 chr4 71497175 71497393 -112791269 - AluY SINE Alu -93 218 1 1129 158 142 0 chr4 71497394 71497641 -112791021 + MER67A LTR ERV1 262 543 0 1371 131 17 59 chr4 71498263 71498337 -112790325 + L1M3 LINE L1 5116 5192 -988 2252 99 0 0 chr4 71498337 71498639 -112790023 + AluSx SINE Alu 1 302 -10 1371 131 17 59 chr4 71498639 71498781 -112789881 + L1M3 LINE L1 5192 5317 -863 1814 155 3 0 chr4 71498781 71499077 -112789585 + AluJb SINE Alu 1 297 -15 1371 131 17 59 chr4 71499077 71499225 -112789437 + L1M3 LINE L1 5317 5470 -710 1804 172 30 0 chr4 71499230 71499533 -112789129 + AluJb SINE Alu 1 312 0 833 152 0 21 chr4 71499538 71499683 -112788979 + FLAM_C SINE Alu 1 142 -1 234 200 143 0 chr4 71499713 71499783 -112788879 + L1MA4 LINE L1 6126 6205 -95 695 106 49 8 chr4 71499845 71499968 -112788694 + L1M LINE L1 5299 5426 -754 287 191 44 0 chr4 71499991 71500059 -112788603 + L1MA4 LINE L1 6226 6296 -4 1182 159 80 0 chr4 71500066 71500292 -112788370 - L1MA7 LINE L1 -149 6142 5899 528 258 213 77 chr4 71500298 71500740 -112787922 - L2 LINE L2 -573 2741 2240 * 640 275 101 28 chr4 71500738 71500843 -112787819 - MIR SINE MIR 0 262 166 2346 55 0 16 chr4 71500843 71501150 -112787512 - AluY SINE Alu -9 302 1 640 275 101 28 chr4 71501150 71501262 -112787400 - MIR SINE MIR -96 166 29 633 165 0 0 chr4 71501400 71501503 -112787159 - FRAM SINE Alu -76 100 1 187 300 17 0 chr4 71501663 71501723 -112786939 - MER5A DNA MER1_type -125 64 4 2034 89 14 0 chr4 71501866 71502180 -112786482 + AluSx SINE Alu 1 318 0 295 254 189 41 chr4 71502435 71502604 -112786058 + MIR SINE MIR 65 258 -4 539 331 106 29 chr4 71502608 71503196 -112785466 + L2 LINE L2 2591 3235 -78 1549 206 106 13 chr4 71503545 71503942 -112784720 + Charlie4a DNA MER1_type 20 453 -55 2105 88 3 0 chr4 71504006 71504313 -112784349 + AluSp SINE Alu 1 308 0 284 319 94 19 chr4 71504486 71504646 -112784016 + L1ME4a LINE L1 5950 6121 0 2110 125 0 0 chr4 71504695 71504998 -112783664 + AluSg SINE Alu 5 307 -3 234 0 0 0 chr4 71505039 71505065 -112783597 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1672 144 0 7 chr4 71505070 71505340 -112783322 - AluJb SINE Alu -44 268 1 212 186 47 0 chr4 71505700 71505743 -112782919 + MIR SINE MIR 218 262 0 2125 81 0 17 chr4 71506407 71506705 -112781957 - AluSx SINE Alu -19 293 1 2251 80 0 3 chr4 71506967 71507267 -112781395 - AluSg SINE Alu -11 299 1 1988 114 0 0 chr4 71508885 71509194 -112779468 - AluSx SINE Alu 0 309 1 534 297 81 0 chr4 71509216 71509425 -112779237 - MIR SINE MIR -9 253 28 2221 95 30 0 chr4 71509583 71509887 -112778775 + AluSq SINE Alu 1 313 0 21 0 0 0 chr4 71510102 71510123 -112778539 + AT_rich Low_complexity Low_complexity 1 21 0 1081 151 11 5 chr4 71510455 71510640 -112778022 + AluSg/x SINE Alu 111 296 -14 429 274 103 0 chr4 71510890 71511007 -112777655 + L2 LINE L2 3182 3310 -3 995 171 0 0 chr4 71511296 71511466 -112777196 - AluJb SINE Alu -9 303 134 841 208 84 87 chr4 71512837 71512924 -112775738 + MSTD LTR MaLR 3 89 -339 7399 51 17 0 chr4 71512924 71514614 -112774048 - L1PA5 LINE L1 -3 6151 4446 841 208 84 87 chr4 71514614 71514848 -112773814 + MSTD LTR MaLR 89 371 -57 6959 109 53 16 chr4 71515682 71516715 -112771947 + MER11C LTR ERVK 1 1071 0 1013 301 84 8 chr4 71516908 71517287 -112771375 + L2 LINE L2 2903 3310 -3 420 20 0 0 chr4 71517287 71517336 -112771326 + (CA)n Simple_repeat Simple_repeat 1 49 0 440 291 238 0 chr4 71517354 71517560 -112771102 + MIR SINE MIR 2 256 -6 2223 114 10 0 chr4 71517790 71518088 -112770574 - AluSx SINE Alu -10 302 2 360 279 232 29 chr4 71518845 71519121 -112769541 + L3 LINE CR1 1052 1383 -194 2396 88 3 7 chr4 71519772 71520078 -112768584 + AluSg SINE Alu 1 305 -5 281 235 0 27 chr4 71520660 71520789 -112767873 + MER5A DNA MER1_type 4 178 0 611 196 95 38 chr4 71520809 71520967 -112767695 + MER5B DNA MER1_type 12 178 0 22 0 0 0 chr4 71521011 71521033 -112767629 + AT_rich Low_complexity Low_complexity 1 22 0 1775 134 56 83 chr4 71521645 71522019 -112766643 + THE1B LTR MaLR 1 364 0 1811 139 0 4 chr4 71522611 71522870 -112765792 + AluSx SINE Alu 1 258 -54 6272 174 41 24 chr4 71523004 71524545 -112764117 + L1M3f LINE L1 42 1613 -4065 948 126 7 0 chr4 71524645 71524808 -112763854 + L1PA11 LINE L1 6027 6190 0 274 329 0 0 chr4 71524809 71524885 -112763777 - LTR16A1 LTR ERVL -375 82 7 743 144 0 0 chr4 71525073 71525191 -112763471 - L1MA6 LINE L1 -107 6193 6076 * 1000 141 31 6 chr4 71525177 71525340 -112763322 + L1MA7 LINE L1 5777 5943 -348 677 315 63 60 chr4 71525358 71525986 -112762676 - ERVL LTR ERVL -439 5325 4656 1971 152 7 3 chr4 71526199 71526501 -112762161 + AluJo SINE Alu 2 304 -8 5592 48 3 2 chr4 71526640 71527279 -112761383 - L1PA7 LINE L1 -13 6141 5502 9728 46 7 0 chr4 71527379 71528581 -112760081 + L1P LINE L1 2868 4077 -2069 15904 42 2 1 chr4 71528715 71530659 -112758003 - L1PA7 LINE L1 -2730 3416 1470 1850 154 27 3 chr4 71531736 71532029 -112756633 + AluSx SINE Alu 4 303 -9 692 60 0 0 chr4 71532060 71532143 -112756519 + AluY SINE Alu 2 84 -227 2090 182 14 8 chr4 71532395 71532758 -112755904 + MLT1A1 LTR MaLR 1 365 0 679 290 57 75 chr4 71533016 71533765 -112754897 + L1MEd LINE L1 449 1184 -4935 2348 200 32 24 chr4 71533766 71534231 -112754431 - ERVL LTR ERVL -1634 4130 3662 930 166 103 77 chr4 71534345 71534626 -112754036 - L1MB7 LINE L1 -18 6165 5876 852 226 42 71 chr4 71534626 71534686 -112753976 + L2 LINE L2 1862 1922 -1392 2414 89 3 0 chr4 71534686 71534990 -112753672 - AluSq SINE Alu -8 305 1 852 226 42 71 chr4 71534990 71535212 -112753450 + L2 LINE L2 1922 2136 -1178 1272 254 149 33 chr4 71535214 71535924 -112752738 + L2 LINE L2 2520 3312 -1 305 299 34 8 chr4 71535926 71536043 -112752619 + L2 LINE L2 2406 2525 -789 398 257 168 42 chr4 71536250 71536470 -112752192 + MIR SINE MIR 5 250 -12 3185 153 45 16 chr4 71537075 71537649 -112751013 + L1MB8 LINE L1 5588 6178 0 834 168 0 29 chr4 71537853 71537990 -112750672 - FLAM_C SINE Alu 0 133 1 967 234 39 27 chr4 71538148 71538404 -112750258 + MIR SINE MIR 2 260 -2 285 291 77 50 chr4 71538773 71538993 -112749669 - L2 LINE L2 -80 3233 3008 1752 149 0 18 chr4 71539253 71539534 -112749128 + AluJo SINE Alu 32 307 -5 2152 59 74 0 chr4 71540006 71540277 -112748385 - AluSp SINE Alu -21 292 2 889 175 0 0 chr4 71540371 71540514 -112748148 - FAM SINE Alu -27 158 16 1129 241 119 33 chr4 71541030 71541449 -112747213 - LTR16A1 LTR ERVL 0 457 3 343 311 30 48 chr4 71541656 71541823 -112746839 - L2 LINE L2 -472 2842 2679 426 231 216 0 chr4 71542623 71542757 -112745905 + L2 LINE L2 2641 2803 -511 1512 178 95 57 chr4 71542757 71543106 -112745556 + MLT1A2 LTR MaLR 1 362 -12 1266 253 142 31 chr4 71543110 71543568 -112745094 + L2 LINE L2 2805 3313 0 1694 161 0 53 chr4 71543792 71544096 -112744566 - AluJo SINE Alu -10 302 15 2367 97 0 0 chr4 71544261 71544570 -112744092 - AluSc SINE Alu 0 309 1 1894 129 44 0 chr4 71545683 71545987 -112742675 - AluSx SINE Alu 0 316 1 300 302 104 0 chr4 71546387 71546493 -112742169 - L2 LINE L2 -2 3311 3195 865 272 21 8 chr4 71546692 71546935 -112741727 - Charlie7 DNA MER1_type -2148 464 219 723 266 20 10 chr4 71546936 71547135 -112741527 - Charlie7 DNA MER1_type -2193 419 219 263 263 50 30 chr4 71547274 71547373 -112741289 - L2 LINE L2 -227 3086 2986 2271 244 77 9 chr4 71547401 71547970 -112740692 - MLT2E LTR ERVL -19 609 2 487 333 121 37 chr4 71547970 71548351 -112740311 - L2 LINE L2 -356 2958 2546 399 235 50 42 chr4 71548544 71548663 -112739999 - MIR SINE MIR -130 132 13 2267 111 7 0 chr4 71549039 71549336 -112739326 - AluSx SINE Alu -13 299 1 223 235 25 62 chr4 71550234 71550315 -112738347 + L3 LINE CR1 1497 1574 -3 236 272 88 40 chr4 71550573 71550698 -112737964 - L2 LINE L2 -10 3303 3173 493 270 92 11 chr4 71551993 71552167 -112736495 - MIR SINE MIR -69 193 6 286 302 171 79 chr4 71552229 71552481 -112736181 + L2 LINE L2 2825 3099 -173 2400 103 0 0 chr4 71553086 71553386 -112735276 - AluSc SINE Alu -9 300 1 1047 227 88 76 chr4 71553500 71553998 -112734664 + L1ME4a LINE L1 5602 6105 -16 366 204 0 45 chr4 71554885 71554973 -112733689 - MIR SINE MIR -66 142 59 3928 111 9 4 chr4 71556048 71556737 -112731925 + L1P5 LINE L1 5108 5802 -349 4379 83 7 2 chr4 71556837 71557453 -112731209 - L1P LINE L1 -750 5396 4778 1840 143 0 18 chr4 71557470 71557756 -112730906 - AluJo SINE Alu -31 281 1 350 279 158 38 chr4 71557954 71558048 -112730614 + L2 LINE L2 2115 2196 -1118 414 39 0 0 chr4 71558048 71558100 -112730562 + (CA)n Simple_repeat Simple_repeat 2 53 0 350 279 158 38 chr4 71558100 71558245 -112730417 + L2 LINE L2 2196 2383 -931 2753 212 158 128 chr4 71558369 71559395 -112729267 + L2 LINE L2 28 1273 -2041 816 184 0 13 chr4 71559395 71559553 -112729109 - FRAM SINE Alu -3 173 18 2753 212 158 128 chr4 71559553 71559990 -112728672 + L2 LINE L2 1273 1696 -1618 306 0 0 0 chr4 71559991 71560025 -112728637 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 294 281 338 25 chr4 71560137 71560457 -112728205 + L2 LINE L2 2862 3281 -32 2026 70 31 0 chr4 71562222 71562479 -112726183 + AluSp SINE Alu 16 280 -33 225 0 0 0 chr4 71562483 71562508 -112726154 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 754 209 105 0 chr4 71562898 71563070 -112725592 - MIR SINE MIR -32 230 41 362 237 124 41 chr4 71563084 71563253 -112725409 + MER90 LTR ERV1 1 183 -392 811 194 0 0 chr4 71563452 71563576 -112725086 + FLAM_C SINE Alu 2 125 -18 744 277 66 9 chr4 71563702 71563915 -112724747 - MLT1J LTR MaLR -234 277 53 849 169 7 39 chr4 71564080 71564234 -112724428 - MER106B DNA MER1_type -910 149 1 285 270 209 0 chr4 71564435 71564550 -112724112 + MIR SINE MIR 49 187 -75 2019 129 26 0 chr4 71564765 71565067 -112723595 - AluSq SINE Alu -3 310 1 339 316 189 48 chr4 71567333 71567817 -112720845 - L2 LINE L2 0 3272 2705 752 130 0 16 chr4 71568467 71568590 -112720072 + MLT1B LTR MaLR 3 123 -267 4074 209 42 15 chr4 71568611 71569987 -112718675 + L1M4c LINE L1 902 2405 -3979 1766 162 15 0 chr4 71570029 71570300 -112718362 - AluJb SINE Alu -24 288 14 732 151 36 0 chr4 71570326 71570465 -112718197 - L1 LINE L1 -2382 5183 5040 * 1174 77 0 0 chr4 71570459 71570614 -112718048 - L1 LINE L1 -4637 2928 2774 745 180 144 0 chr4 71570612 71570751 -112717911 - L1 LINE L1 -5580 1985 1827 * 873 277 45 29 chr4 71620771 71621085 -112667577 + HERV16 LTR ERVL 2164 2482 -2514 5347 84 11 1 chr4 71621145 71621902 -112666760 - L1MA2 LINE L1 0 6304 5541 981 179 18 0 chr4 71621902 71622120 -112666542 - L1MA2 LINE L1 -953 5193 4972 562 341 100 0 chr4 71623040 71623260 -112665402 - MIR SINE MIR 0 262 21 8084 51 3 1 chr4 71623580 71624604 -112664058 + HERVL LTR ERVL 1375 2400 -3254 481 285 23 8 chr4 71625804 71625934 -112662728 - MIR SINE MIR -109 153 22 1095 70 26 0 chr4 71626216 71626372 -112662290 - L1M1 LINE L1 -4710 2855 2696 5952 147 64 0 chr4 71626389 71627130 -112661532 - L1M1 LINE L1 -5001 2564 1735 240 35 0 0 chr4 71627130 71627159 -112661503 + (TC)n Simple_repeat Simple_repeat 2 30 0 5952 147 64 0 chr4 71627159 71627469 -112661193 - L1M1 LINE L1 -5830 1735 1446 341 308 0 0 chr4 71628144 71628222 -112660440 - L2 LINE L2 -1 3271 3194 23 33 0 0 chr4 71629082 71629112 -112659550 + AT_rich Low_complexity Low_complexity 1 30 0 1828 128 3 14 chr4 71629133 71629430 -112659232 - L1PA15 LINE L1 0 6165 5872 1219 138 0 0 chr4 71629602 71629769 -112658893 - AluJb SINE Alu -12 300 134 328 296 94 56 chr4 71630330 71630563 -112658099 + L1ME LINE L1 109 350 -5720 388 284 27 14 chr4 71630712 71630860 -112657802 + L1ME LINE L1 331 480 -5590 445 235 63 89 chr4 71631018 71631444 -112657218 + L1ME LINE L1 491 905 -5178 668 261 86 71 chr4 71631560 71631954 -112656708 + LTR33A LTR ERVL 124 523 0 355 332 60 13 chr4 71631971 71632203 -112656459 - L2 LINE L2 -804 2510 2268 1169 288 50 19 chr4 71632244 71632667 -112655995 + L2 LINE L2 2823 3258 -55 3821 152 23 27 chr4 71632768 71633831 -112654831 - L1 LINE L1 -3590 3975 2920 258 229 64 64 chr4 71634003 71634143 -112654519 + L1MC4 LINE L1 7902 8041 -1 417 282 86 46 chr4 71634170 71634818 -112653844 + L1M4 LINE L1 2946 3619 -2527 266 306 16 0 chr4 71634864 71634985 -112653677 + L1M4 LINE L1 4724 4846 -1300 975 125 22 38 chr4 71635001 71635185 -112653477 - THE1C LTR MaLR 0 375 195 4316 184 39 20 chr4 71635334 71636392 -112652270 - L1 LINE L1 -2002 5563 4486 307 264 11 22 chr4 71637425 71637516 -112651146 + MLT1I LTR MaLR 68 157 -252 1114 187 20 8 chr4 71637557 71637863 -112650799 - MLT1A1 LTR MaLR -2 363 10 335 256 178 0 chr4 71637917 71638007 -112650655 + MLT1J2 LTR MaLR 274 379 -71 1243 137 0 0 chr4 71638237 71638427 -112650235 - L1P LINE L1 -5946 200 11 189 107 0 0 chr4 71638578 71638606 -112650056 + (T)n Simple_repeat Simple_repeat 1 28 0 180 97 0 0 chr4 71638660 71638691 -112649971 + (A)n Simple_repeat Simple_repeat 1 31 0 973 260 20 5 chr4 71638859 71639255 -112649407 - L1M4 LINE L1 -2990 3156 2755 2255 167 46 32 chr4 71639890 71640388 -112648274 + Tigger1 DNA MER2_type 2 506 -1912 401 316 99 59 chr4 71640708 71641038 -112647624 - L2 LINE L2 0 3272 2930 193 293 0 0 chr4 71641440 71641481 -112647181 - L2 LINE L2 -16 3256 3216 1927 262 37 8 chr4 71641623 71642568 -112646094 + L1M4 LINE L1 4221 5242 -904 2081 115 10 23 chr4 71642612 71642916 -112645746 - AluSg SINE Alu -10 300 1 3065 135 84 6 chr4 71643979 71644468 -112644194 - MER1A DNA MER1_type 0 527 1 23 68 0 0 chr4 71644990 71645034 -112643628 + AT_rich Low_complexity Low_complexity 1 44 0 717 259 53 9 chr4 71645337 71645658 -112643004 + L1MDa LINE L1 2300 2634 -3906 266 241 0 54 chr4 71645666 71645778 -112642884 - L1 LINE L1 -3058 4507 4402 1916 241 45 14 chr4 71645791 71646528 -112642134 + L1MDa LINE L1 2641 3400 -3140 21 36 0 0 chr4 71646530 71646558 -112642104 + AT_rich Low_complexity Low_complexity 1 28 0 2222 198 4 4 chr4 71646661 71647171 -112641491 + L1P5 LINE L1 4904 5416 -740 4538 87 27 3 chr4 71647171 71647838 -112640824 + L1MA1 LINE L1 5620 6302 0 2222 198 4 4 chr4 71647838 71647855 -112640807 + L1P5 LINE L1 5416 5431 -725 279 221 240 29 chr4 71648027 71648131 -112640531 + MIR SINE MIR 125 250 -12 188 267 0 22 chr4 71648241 71648286 -112640376 + MIR SINE MIR 18 61 -201 1152 63 0 0 chr4 71648287 71648429 -112640233 - AluY SINE Alu -9 302 161 9800 56 1 0 chr4 71648529 71649840 -112638822 - L1P LINE L1 -3429 2717 1406 4466 188 41 14 chr4 71649940 71650822 -112637840 - L1 LINE L1 -6641 924 19 342 250 18 62 chr4 71651407 71651519 -112637143 + L2 LINE L2 3180 3286 -27 201 74 0 0 chr4 71652272 71652299 -112636363 + (CTTTG)n Simple_repeat Simple_repeat 1 27 0 18684 161 20 9 chr4 71652669 71656113 -112632549 - L1M1 LINE L1 -4067 3498 16 234 149 85 0 chr4 71656350 71656397 -112632265 + AluJo SINE Alu 85 135 -167 342 237 0 21 chr4 71656542 71656635 -112632027 + LTR67 LTR ERVL 457 547 -10 216 197 0 49 chr4 71656918 71656979 -112631683 + A-rich Low_complexity Low_complexity 1 58 0 181 279 23 0 chr4 71657018 71657061 -112631601 + L2 LINE L2 3251 3294 -19 586 179 73 8 chr4 71657459 71657582 -112631080 + MIR SINE MIR 100 230 -32 394 278 93 61 chr4 71659045 71659358 -112629304 + L1ME4a LINE L1 5721 6043 -78 23 0 0 0 chr4 71659423 71659446 -112629216 + AT_rich Low_complexity Low_complexity 1 23 0 251 91 23 0 chr4 71660574 71660618 -112628044 + MADE1 DNA Mariner 1 45 -35 2643 88 5 44 chr4 71660858 71661049 -112627613 - THE1C LTR MaLR -2 373 203 1560 168 74 35 chr4 71661049 71661364 -112627298 - AluSx SINE Alu 0 312 1 2643 88 5 44 chr4 71661364 71661560 -112627102 - THE1C LTR MaLR -172 203 1 1965 157 0 7 chr4 71661602 71661902 -112626760 - AluSx SINE Alu -14 298 1 181 286 152 38 chr4 71661942 71662047 -112626615 - L2 LINE L2 -215 3057 2941 291 130 0 0 chr4 71662094 71662140 -112626522 + Alu SINE Alu 1 46 -256 473 233 150 0 chr4 71665797 71665917 -112622745 - MIR SINE MIR -22 240 103 440 303 34 58 chr4 71665997 71666205 -112622457 - MIR SINE MIR -58 204 2 * 831 332 63 14 chr4 71666205 71666568 -112622094 - L2 LINE L2 -512 2802 2422 290 270 159 8 chr4 71666649 71666775 -112621887 + L2 LINE L2 3167 3311 -2 1453 81 63 32 chr4 71666841 71667062 -112621600 - MER30 DNA MER1_type -2 228 1 414 55 0 0 chr4 71667116 71667171 -112621491 - MER30 DNA MER1_type -175 55 1 2867 204 116 127 chr4 71667229 71667484 -112621178 + HAL1 LINE L1 213 469 -2038 640 134 14 106 chr4 71667484 71667626 -112621036 + FLAM_A SINE Alu 1 129 -4 2867 204 116 127 chr4 71667626 71667883 -112620779 + HAL1 LINE L1 469 727 -1780 680 212 63 77 chr4 71667883 71668105 -112620557 + MER20 DNA MER1_type 1 219 0 2867 204 116 127 chr4 71668105 71668677 -112619985 + HAL1 LINE L1 727 1304 -1203 330 306 165 16 chr4 71668677 71668798 -112619864 - L2 LINE L2 0 3272 3134 2867 204 116 127 chr4 71668798 71668819 -112619843 + HAL1 LINE L1 1304 1324 -1183 1225 179 168 41 chr4 71668819 71669087 -112619575 + AluJb SINE Alu 1 302 0 2867 204 116 127 chr4 71669087 71670174 -112618488 + HAL1 LINE L1 1324 2507 0 593 232 111 129 chr4 71670198 71670677 -112617985 + L1MC4a LINE L1 5584 6053 -1755 1493 77 56 5 chr4 71670745 71670941 -112617721 + AluSc SINE Alu 85 290 -19 9679 42 1 1 chr4 71670973 71672044 -112616618 + MER11C LTR ERVK 1 1071 0 268 295 162 14 chr4 71672135 71672345 -112616317 - L2 LINE L2 -805 2509 2269 713 223 69 21 chr4 71672646 71672834 -112615828 + MER58A DNA MER1_type 26 222 -2 369 292 124 67 chr4 71673400 71673778 -112614884 + L2 LINE L2 2618 3004 -268 232 263 143 38 chr4 71673812 71673945 -112614717 + L2 LINE L2 3158 3304 -9 1063 199 132 4 chr4 71673966 71674238 -112614424 + L1MB7 LINE L1 5878 6184 0 1906 139 7 0 chr4 71674757 71675038 -112613624 + AluJb SINE Alu 30 312 0 314 263 197 0 chr4 71675105 71675242 -112613420 - LTR16C LTR ERVL -9 482 319 201 281 31 0 chr4 71675988 71676052 -112612610 + MIR SINE MIR 89 154 -108 2303 86 7 0 chr4 71676298 71676588 -112612074 + AluSc SINE Alu 1 292 -17 921 220 89 5 chr4 71679542 71679756 -112608906 - MIR SINE MIR 0 262 31 495 331 89 45 chr4 71680524 71680793 -112607869 + L2 LINE L2 2992 3272 0 1835 147 29 29 chr4 71681080 71681221 -112607441 + AluJb SINE Alu 1 141 -171 2057 112 49 0 chr4 71681221 71681506 -112607156 + AluSx SINE Alu 1 299 -13 1835 147 29 29 chr4 71681506 71681671 -112606991 + AluJb SINE Alu 140 307 -5 192 214 48 95 chr4 71681738 71681822 -112606840 + MIR3 SINE MIR 123 202 -6 23 78 0 0 chr4 71682305 71682356 -112606306 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr4 71682435 71682457 -112606205 + AT_rich Low_complexity Low_complexity 1 22 0 528 261 145 30 chr4 71683605 71683839 -112604823 - MIR SINE MIR 0 262 2 299 188 50 25 chr4 71683973 71684053 -112604609 - L1ME4a LINE L1 -215 5906 5825 2544 123 33 3 chr4 71684223 71684612 -112604050 + MSTA LTR MaLR 1 401 -27 2165 119 3 0 chr4 71684641 71684935 -112603727 - AluSc SINE Alu -14 295 1 286 103 0 0 chr4 71684935 71684974 -112603688 + MSTA LTR MaLR 388 426 0 362 117 33 0 chr4 71685041 71685101 -112603561 + MIR SINE MIR 90 151 -111 187 349 0 16 chr4 71685127 71685190 -112603472 + L2 LINE L2 3211 3272 0 195 42 0 0 chr4 71685741 71685765 -112602897 + (CA)n Simple_repeat Simple_repeat 2 25 0 455 285 54 0 chr4 71686689 71686819 -112601843 - MIR SINE MIR -49 213 77 25 0 0 0 chr4 71686932 71686957 -112601705 + AT_rich Low_complexity Low_complexity 1 25 0 216 0 0 0 chr4 71686964 71686988 -112601674 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1806 111 0 8 chr4 71686999 71687243 -112601419 - AluSx SINE Alu -70 242 1 29 0 0 0 chr4 71687360 71687389 -112601273 + AT_rich Low_complexity Low_complexity 1 29 0 429 288 121 20 chr4 71687740 71687938 -112600724 - MIR SINE MIR -13 249 32 230 253 76 38 chr4 71688320 71688399 -112600263 + MER5A DNA MER1_type 1 82 -107 226 179 0 26 chr4 71688489 71688567 -112600095 + (TA)n Simple_repeat Simple_repeat 1 76 0 210 214 36 0 chr4 71688583 71688639 -112600023 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 281 159 0 14 chr4 71688685 71688754 -112599908 + (TA)n Simple_repeat Simple_repeat 1 68 0 1543 181 50 0 chr4 71688755 71689032 -112599630 - AluJo SINE Alu -16 296 6 251 266 0 31 chr4 71689033 71689097 -112599565 + MER5B DNA MER1_type 117 178 0 843 169 23 0 chr4 71689167 71689297 -112599365 - FLAM_A SINE Alu 0 133 1 210 298 0 0 chr4 71689491 71689548 -112599114 + MIR3 SINE MIR 98 154 -54 1854 146 3 53 chr4 71689799 71690121 -112598541 - AluJo SINE Alu -6 306 1 317 239 11 33 chr4 71690152 71690244 -112598418 + MIR SINE MIR 173 262 0 837 149 0 22 chr4 71690419 71690553 -112598109 - FLAM_A SINE Alu -2 131 1 1096 217 48 4 chr4 71691881 71692130 -112596532 - MIR SINE MIR -2 260 1 2547 147 36 49 chr4 71693161 71693631 -112595031 + MLT2C2 LTR ERVL 1 464 0 4761 157 12 27 chr4 71693763 71694646 -112594016 + L1MB7 LINE L1 5298 6167 -17 279 241 81 0 chr4 71694889 71694976 -112593686 - MIR SINE MIR -10 252 159 1986 165 0 9 chr4 71695629 71695944 -112592718 - AluSx SINE Alu 0 312 1 787 144 75 27 chr4 71696810 71696956 -112591706 + AluJb SINE Alu 138 290 -22 36 0 0 0 chr4 71696956 71696992 -112591670 + AT_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr4 71698094 71698126 -112590536 + AT_rich Low_complexity Low_complexity 1 32 0 1999 157 0 3 chr4 71698162 71698456 -112590206 - AluJb SINE Alu -19 293 1 476 158 97 9 chr4 71698573 71698687 -112589975 + MER96B DNA MER1_type? 56 179 -238 221 158 157 5 chr4 71698692 71698715 -112589947 + L2 LINE L2 3188 3206 -107 180 0 0 0 chr4 71698715 71698735 -112589927 + (CCCTAG)n Simple_repeat Simple_repeat 3 22 0 221 158 157 5 chr4 71698735 71698764 -112589898 + L2 LINE L2 3206 3294 -19 1385 156 90 36 chr4 71698830 71699131 -112589531 + MER33 DNA MER1_type 7 323 -1 474 162 14 0 chr4 71699360 71699434 -112589228 - Tigger5 DNA MER2_type -1 2322 2248 347 221 0 0 chr4 71699449 71699517 -112589145 + Tigger5 DNA MER2_type 2253 2320 -3 420 184 0 26 chr4 71699521 71699597 -112589065 - Tigger5 DNA MER2_type -2249 74 1 4297 187 78 14 chr4 71699716 71700527 -112588135 - MER21B LTR ERV1 0 863 1 224 179 71 116 chr4 71700689 71700801 -112587861 - MIR SINE MIR -66 196 90 1428 154 46 11 chr4 71701310 71701570 -112587092 + MSTA LTR MaLR 133 401 -27 250 132 38 0 chr4 71701578 71701631 -112587031 + CT-rich Low_complexity Low_complexity 2 56 0 2052 158 0 0 chr4 71701634 71701938 -112586724 - AluSx SINE Alu -6 306 3 3352 141 9 4 chr4 71701980 71702513 -112586149 + MSTA-int LTR MaLR 1 536 -1115 1260 139 23 19 chr4 71702520 71702736 -112585926 + AluJo SINE Alu 86 302 -10 6111 159 77 2 chr4 71702739 71703773 -112584889 + MSTA-int LTR MaLR 540 1651 0 2394 134 91 8 chr4 71703773 71704168 -112584494 + MSTA LTR MaLR 1 428 0 708 265 137 5 chr4 71704174 71704385 -112584277 - MIR SINE MIR 0 262 24 1864 137 22 7 chr4 71704956 71705234 -112583428 + AluJo SINE Alu 1 282 -30 198 0 0 0 chr4 71705239 71705261 -112583401 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 1882 114 70 0 chr4 71705959 71706230 -112582432 + AluSx SINE Alu 1 290 -22 222 312 64 0 chr4 71706531 71706640 -112582022 - MIR SINE MIR -48 214 99 2234 152 23 21 chr4 71706694 71707083 -112581579 + MLT1B LTR MaLR 1 390 0 403 305 29 24 chr4 71707089 71707319 -112581343 + MLT1H LTR MaLR 72 274 -135 339 44 0 0 chr4 71708703 71708748 -112579914 + (TG)n Simple_repeat Simple_repeat 1 45 0 298 308 167 19 chr4 71708920 71709076 -112579586 - MIR SINE MIR -13 249 71 693 155 54 0 chr4 71709155 71709284 -112579378 + MER53 DNA DNA 1 136 -53 328 234 180 0 chr4 71709286 71709397 -112579265 + L1MC4 LINE L1 7823 7953 -89 467 146 42 52 chr4 71709419 71709515 -112579147 + MER53 DNA DNA 95 189 0 186 271 21 0 chr4 71710371 71710419 -112578243 - L2 LINE L2 -6 3266 3218 196 299 15 0 chr4 71710596 71710663 -112577999 + L2 LINE L2 2306 2373 -941 239 269 25 91 chr4 71710688 71710885 -112577777 + L2 LINE L2 2555 2738 -576 272 360 119 37 chr4 71710960 71711338 -112577324 + L2 LINE L2 2864 3272 0 378 247 0 12 chr4 71711768 71711853 -112576809 - L2 LINE L2 -1 3271 3188 2140 113 7 0 chr4 71712117 71712434 -112576228 - AluSx SINE Alu 0 319 1 885 239 172 62 chr4 71712490 71712865 -112575797 - L1ME4a LINE L1 -27 6094 5762 1810 138 60 3 chr4 71712865 71713148 -112575514 - AluSx SINE Alu -13 299 1 885 239 172 62 chr4 71713148 71713417 -112575245 - L1ME4a LINE L1 -359 5762 5379 262 158 24 19 chr4 71714379 71714440 -112574222 + MER5B DNA MER1_type 122 173 -5 1356 156 22 123 chr4 71714746 71714917 -112573745 + L1MA8 LINE L1 5943 6051 -240 1907 152 10 10 chr4 71714917 71715227 -112573435 + AluJo SINE Alu 1 310 -2 1356 156 22 123 chr4 71715227 71715443 -112573219 + L1MA8 LINE L1 6051 6287 -4 679 263 88 66 chr4 71715596 71715830 -112572832 - Charlie8 DNA MER1_type -1924 493 245 2173 148 46 6 chr4 71715830 71716181 -112572481 + MLT1A1 LTR MaLR 1 365 0 679 263 88 66 chr4 71716181 71716342 -112572320 - Charlie8 DNA MER1_type -2172 245 89 195 365 37 37 chr4 71716453 71716560 -112572102 - L2 LINE L2 -4 3268 3162 28 48 0 0 chr4 71716878 71716920 -112571742 + AT_rich Low_complexity Low_complexity 1 42 0 1003 191 100 14 chr4 71716931 71717151 -112571511 + Charlie1 DNA MER1_type 1 239 -2522 493 161 62 36 chr4 71717140 71717252 -112571410 + Charlie1 DNA MER1_type 2616 2730 -31 * 516 275 33 0 chr4 71717265 71717385 -112571277 + L2 LINE L2 3149 3272 0 228 315 63 45 chr4 71717969 71718080 -112570582 - MER5A DNA MER1_type -63 126 14 575 158 45 60 chr4 71718727 71718860 -112569802 + MER94 DNA DNA 3 133 -1 245 351 45 9 chr4 71718904 71719015 -112569647 + MIR3 SINE MIR 65 179 -29 2327 107 0 0 chr4 71719232 71719540 -112569122 - AluSg SINE Alu -2 308 1 409 277 14 43 chr4 71720010 71720151 -112568511 - MIR SINE MIR -32 230 94 222 243 9 135 chr4 71720447 71720558 -112568104 - MIR SINE MIR -75 187 91 912 194 41 0 chr4 71720956 71721126 -112567536 - MER69A DNA AcHobo 0 177 1 376 312 8 11 chr4 71721149 71721284 -112567378 - MIR SINE MIR -62 146 18 333 307 113 22 chr4 71721310 71721541 -112567121 - MIR SINE MIR -8 254 3 296 303 11 11 chr4 71724460 71724549 -112564113 + L2 LINE L2 3222 3310 -3 919 226 115 87 chr4 71724631 71725082 -112563580 - LTR16B LTR ERVL 0 464 1 271 301 53 25 chr4 71725085 71725242 -112563420 - MIR SINE MIR -62 146 4 952 261 196 32 chr4 71725320 71725795 -112562867 + MLT1H1 LTR MaLR 3 555 0 2214 128 94 3 chr4 71727162 71727546 -112561116 + MSTB1 LTR MaLR 1 419 -13 616 123 0 0 chr4 71727883 71727964 -112560698 + AluJ/FLAM SINE Alu 2 82 -230 183 42 0 0 chr4 71728411 71728435 -112560227 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 605 260 96 24 chr4 71728714 71728922 -112559740 - MIR SINE MIR -27 235 13 180 0 0 0 chr4 71728988 71729008 -112559654 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 1400 134 26 48 chr4 71729937 71730181 -112558481 + L1MB5 LINE L1 5584 5823 -351 1667 166 21 14 chr4 71730181 71730471 -112558191 + AluJo SINE Alu 1 292 -20 1400 134 26 48 chr4 71730471 71730495 -112558167 + L1MB5 LINE L1 5823 5846 -328 2136 116 0 3 chr4 71731172 71731456 -112557206 - AluSq SINE Alu -30 283 1 1628 189 10 10 chr4 71731462 71731764 -112556898 + L1PA16 LINE L1 5864 6165 -1 2237 112 0 3 chr4 71732061 71732364 -112556298 - AluSx SINE Alu -10 302 1 257 191 0 0 chr4 71732573 71732620 -112556042 - MIR SINE MIR -25 237 191 411 263 32 0 chr4 71733388 71733483 -112555179 + MER5A DNA MER1_type 9 106 -83 3363 132 69 20 chr4 71733812 71734403 -112554259 - MER67C LTR ERV1 0 710 91 968 201 6 6 chr4 71734405 71734579 -112554083 - AluSg/x SINE Alu -17 295 122 3352 91 19 80 chr4 71734593 71735134 -112553528 - L1PB1 LINE L1 -1 6150 5643 3877 198 13 4 chr4 71735134 71735890 -112552772 - L1 LINE L1 -1896 4966 4204 3268 119 33 93 chr4 71735892 71736524 -112552138 - LTR14B LTR ERVK 0 608 15 14265 159 45 16 chr4 71736526 71738032 -112550630 - L1PBa LINE L1 -2660 4202 2742 2212 125 3 6 chr4 71738032 71738345 -112550317 + AluSx SINE Alu 1 312 0 14265 159 45 16 chr4 71738345 71740456 -112548206 - L1PBa LINE L1 -4120 2742 478 17064 95 18 19 chr4 71740456 71743409 -112545253 - MER61A-int LTR ERV1 -413 4602 1423 267 31 0 0 chr4 71743409 71743441 -112545221 + (CA)n Simple_repeat Simple_repeat 1 32 0 17064 95 18 19 chr4 71743441 71743545 -112545117 - MER61A-int LTR ERV1 -3592 1423 1320 2460 169 83 32 chr4 71743574 71744171 -112544491 - MER61A-int LTR ERV1 -4510 707 1 1916 149 71 9 chr4 71744171 71744494 -112544168 - MER61A LTR ERV1 0 343 1 1128 231 0 40 chr4 71744494 71744767 -112543895 + AluJo SINE Alu 31 292 -20 2181 100 3 3 chr4 71744872 71745182 -112543480 + AluY SINE Alu 1 310 -1 319 101 25 63 chr4 71745314 71745393 -112543269 - AluJ/FLAM SINE Alu -241 61 1 1641 184 27 3 chr4 71745426 71745719 -112542943 + AluJb SINE Alu 7 306 -6 23 0 0 0 chr4 71746572 71746595 -112542067 + AT_rich Low_complexity Low_complexity 1 23 0 213 304 25 25 chr4 71746672 71746751 -112541911 + MIR3 SINE MIR 125 203 -5 328 294 116 47 chr4 71746799 71747074 -112541588 + L1ME4a LINE L1 5823 6116 -5 187 329 118 12 chr4 71747606 71747691 -112540971 - MIR SINE MIR -63 145 52 388 305 68 0 chr4 71749999 71750117 -112538545 - L2 LINE L2 -2 3270 3145 424 225 0 0 chr4 71750266 71750346 -112538316 + L2 LINE L2 3234 3313 0 2288 144 6 0 chr4 71750423 71750756 -112537906 + MER2 DNA MER2_type 1 335 -10 21 71 0 0 chr4 71750874 71750916 -112537746 + AT_rich Low_complexity Low_complexity 1 42 0 382 223 162 34 chr4 71750955 71751103 -112537559 - MIR SINE MIR -94 168 2 1178 166 100 35 chr4 71751294 71751553 -112537109 - Charlie1b DNA MER1_type -200 323 48 2135 112 3 0 chr4 71751694 71751989 -112536673 - AluY SINE Alu -15 296 1 664 300 158 21 chr4 71752423 71752710 -112535952 + L2 LINE L2 2740 2986 -327 883 154 0 29 chr4 71752710 71752846 -112535816 + FLAM_C SINE Alu 2 133 0 664 300 158 21 chr4 71752846 71753056 -112535606 + L2 LINE L2 2986 3312 -1 386 306 49 55 chr4 71753260 71753443 -112535219 + HAL1b LINE L1 17 198 -1150 1631 112 49 134 chr4 71753575 71753940 -112534722 + MER7A DNA MER2_type 1 332 -14 301 183 124 59 chr4 71753949 71754118 -112534544 + HAL1b LINE L1 899 1078 -270 29 28 0 0 chr4 71754266 71754302 -112534360 + AT_rich Low_complexity Low_complexity 1 36 0 816 266 66 13 chr4 71754381 71754685 -112533977 - L1MEc LINE L1 -4646 2179 1860 300 297 17 25 chr4 71754787 71754905 -112533757 - L1MEc LINE L1 -5366 1176 1060 2055 160 147 5 chr4 71756241 71756635 -112532027 - LTR47A LTR ERVL 0 452 3 2212 105 31 0 chr4 71756806 71757100 -112531562 + AluSp SINE Alu 1 303 -10 230 36 0 0 chr4 71757740 71757768 -112530894 + U7 snRNA snRNA 1 28 -35 202 262 71 63 chr4 71758150 71758276 -112530386 + MIR SINE MIR 76 202 -60 588 249 56 52 chr4 71758773 71759006 -112529656 - MIR SINE MIR -11 251 18 2471 101 42 6 chr4 71759140 71759497 -112529165 - L1PB1 LINE L1 0 6151 5782 450 159 14 28 chr4 71759497 71759642 -112529020 + (TA)n Simple_repeat Simple_repeat 1 143 0 186 0 88 0 chr4 71759675 71759709 -112528953 + (TA)n Simple_repeat Simple_repeat 2 38 0 6178 166 33 11 chr4 71759754 71761439 -112527223 - L1PB1 LINE L1 -374 5777 4052 768 71 10 0 chr4 71761540 71761639 -112527023 + AluSg/x SINE Alu 209 308 -2 248 207 86 17 chr4 71761743 71761801 -112526861 + L2 LINE L2 3183 3244 -69 339 270 161 75 chr4 71761843 71762110 -112526552 - L3 LINE CR1 -1 1576 1287 272 261 52 52 chr4 71762265 71762380 -112526282 - L3 LINE CR1 -607 970 856 1650 168 24 30 chr4 71762414 71762712 -112525950 - AluJb SINE Alu -16 296 1 2268 108 3 3 chr4 71762880 71763185 -112525477 + AluSq SINE Alu 2 306 -7 20930 94 11 12 chr4 71763326 71763659 -112525003 + Charlie3 DNA MER1_type 1 333 -2373 2280 108 0 7 chr4 71763659 71763966 -112524696 + AluSg SINE Alu 1 305 -5 20930 94 11 12 chr4 71763966 71766341 -112522321 + Charlie3 DNA MER1_type 333 2706 0 207 162 0 0 chr4 71767117 71767154 -112521508 + (TATG)n Simple_repeat Simple_repeat 3 39 0 597 262 43 104 chr4 71767421 71767506 -112521156 + MIR SINE MIR 1 90 -172 1244 202 118 4 chr4 71767506 71767768 -112520894 - AluJo SINE Alu -18 294 3 597 262 43 104 chr4 71767768 71767961 -112520701 + MIR SINE MIR 90 262 0 1366 302 93 44 chr4 71768056 71768962 -112519700 + HAL1 LINE L1 34 996 -1511 1971 120 44 0 chr4 71768962 71769262 -112519400 + AluSg SINE Alu 1 312 0 1366 302 93 44 chr4 71769262 71769331 -112519331 + HAL1 LINE L1 996 1060 -1447 3571 82 0 0 chr4 71769333 71769795 -112518867 + L1PA7 LINE L1 4040 4501 -1645 6821 52 3 33 chr4 71771164 71771867 -112516795 + L1PA7 LINE L1 4485 5207 -947 2150 113 0 0 chr4 71771867 71772150 -112516512 + AluSc SINE Alu 9 291 -18 6821 52 3 33 chr4 71772150 71773136 -112515526 + L1PA7 LINE L1 5207 6141 -13 1569 166 83 43 chr4 71773347 71773573 -112515089 - MLT1A1 LTR MaLR -2 363 117 2381 73 0 35 chr4 71773573 71773888 -112514774 + AluY SINE Alu 2 305 -6 1569 166 83 43 chr4 71773888 71774010 -112514652 - MLT1A1 LTR MaLR -248 117 1 477 299 76 7 chr4 71774080 71774572 -112514090 + L1M4c LINE L1 1037 1720 -4815 376 180 79 45 chr4 71774583 71774672 -112513990 - L2 LINE L2 0 3313 3222 1953 157 3 0 chr4 71774814 71775126 -112513536 + AluJb SINE Alu 1 313 0 382 285 22 51 chr4 71775251 71775388 -112513274 - MIR3 SINE MIR -1 207 75 248 306 30 22 chr4 71775471 71775605 -112513057 - HAL1 LINE L1 0 2507 2373 248 323 42 21 chr4 71776768 71776864 -112511798 + L2 LINE L2 2892 2989 -324 23 0 0 0 chr4 71777519 71777542 -112511120 + AT_rich Low_complexity Low_complexity 1 23 0 2359 59 0 14 chr4 71777550 71777859 -112510803 + AluSc SINE Alu 1 305 0 212 265 73 44 chr4 71778416 71778484 -112510178 - L2 LINE L2 -50 3263 3194 249 108 0 0 chr4 71779662 71779699 -112508963 + (A)n Simple_repeat Simple_repeat 1 37 0 21 0 0 0 chr4 71781201 71781222 -112507440 + AT_rich Low_complexity Low_complexity 1 21 0 291 54 0 0 chr4 71781222 71781259 -112507403 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 36 0 0 chr4 71781277 71781305 -112507357 + AT_rich Low_complexity Low_complexity 1 28 0 617 162 9 0 chr4 71782039 71782144 -112506518 - U6 snRNA snRNA -1 106 1 210 290 129 0 chr4 71783037 71783099 -112505563 - L3 LINE CR1 -6 1571 1502 180 0 0 0 chr4 71783420 71783440 -112505222 + (CA)n Simple_repeat Simple_repeat 1 20 0 459 309 213 31 chr4 71783503 71784303 -112504359 + L2 LINE L2 2286 3251 -21 2027 145 121 16 chr4 71784342 71784729 -112503933 + MSTA LTR MaLR 1 428 0 9784 133 9 36 chr4 71784731 71786353 -112502309 + MSTA-int LTR MaLR 3 1580 0 2007 101 118 66 chr4 71786353 71786708 -112501954 + MSTA LTR MaLR 1 381 -47 2444 82 0 0 chr4 71786708 71787011 -112501651 + AluY SINE Alu 1 303 -8 2007 101 118 66 chr4 71787011 71787062 -112501600 + MSTA LTR MaLR 381 428 0 327 132 19 0 chr4 71787228 71787281 -112501381 + MER68 LTR ERV1 158 211 -351 278 293 0 0 chr4 71788042 71788117 -112500545 - L2 LINE L2 -1 3312 3238 242 103 0 0 chr4 71788169 71788208 -112500454 + MER96 DNA MER1_type? 137 175 0 337 291 111 6 chr4 71788209 71788381 -112500281 - L2 LINE L2 -69 3244 3055 2941 145 23 29 chr4 71788381 71788938 -112499724 + MER68 LTR ERV1 1 554 -8 819 265 138 26 chr4 71788947 71789413 -112499249 - L2 LINE L2 -256 3057 2541 1051 194 109 7 chr4 71789798 71790092 -112498570 + MER33 DNA MER1_type 1 324 0 769 207 55 6 chr4 71791151 71791315 -112497347 + MER5A DNA MER1_type 18 189 0 593 152 152 22 chr4 71791332 71791470 -112497192 + MIR SINE MIR 41 196 -66 201 374 16 41 chr4 71791749 71791872 -112496790 - MIR SINE MIR -93 169 50 231 387 42 8 chr4 71791916 71792035 -112496627 - L2 LINE L2 -9 3263 3141 255 31 0 0 chr4 71792053 71792085 -112496577 + (CA)n Simple_repeat Simple_repeat 2 33 0 48 18 0 0 chr4 71792171 71792226 -112496436 + AT_rich Low_complexity Low_complexity 1 55 0 199 320 39 13 chr4 71792361 71792439 -112496223 - MIR SINE MIR -152 110 31 723 169 7 29 chr4 71793319 71793455 -112495207 - FLAM_C SINE Alu 0 133 1 2149 96 0 4 chr4 71794358 71794679 -112493983 + AluSg SINE Alu 1 320 0 255 360 106 21 chr4 71795769 71796147 -112492515 - L2 LINE L2 -411 2903 2494 2368 106 0 0 chr4 71797080 71797381 -112491281 + AluSq SINE Alu 1 301 -12 1604 174 28 21 chr4 71797592 71797874 -112490788 + AluJb SINE Alu 6 289 -23 22 0 0 0 chr4 71798065 71798087 -112490575 + AT_rich Low_complexity Low_complexity 1 22 0 228 241 36 72 chr4 71798092 71798175 -112490487 + MIR SINE MIR 93 172 -90 2432 75 0 0 chr4 71798280 71798575 -112490087 - AluSx SINE Alu -17 295 1 1674 153 4 19 chr4 71799328 71799596 -112489066 + AluJo SINE Alu 33 296 -16 264 323 10 10 chr4 71799911 71800007 -112488655 + MIR3 SINE MIR 100 195 -13 1740 180 3 33 chr4 71801484 71801790 -112486872 - AluJb SINE Alu -15 297 1 332 223 128 0 chr4 71803352 71803446 -112485216 - MER112 DNA MER1_type -124 136 31 337 226 36 66 chr4 71803891 71804028 -112484634 + MER94 DNA DNA 1 133 -1 22 56 0 0 chr4 71804265 71804301 -112484361 + AT_rich Low_complexity Low_complexity 1 36 0 30 45 0 0 chr4 71804532 71804576 -112484086 + AT_rich Low_complexity Low_complexity 1 44 0 349 149 0 30 chr4 71805005 71805072 -112483590 + L1MC5 LINE L1 7837 7901 -60 342 0 0 0 chr4 71805170 71805208 -112483454 + (CA)n Simple_repeat Simple_repeat 2 39 0 1541 118 115 55 chr4 71805208 71805556 -112483106 + THE1C LTR MaLR 7 375 0 8858 126 22 45 chr4 71805558 71807111 -112481551 + THE1C-int LTR MaLR 3 1522 -58 2412 81 0 0 chr4 71807111 71807406 -112481256 - AluY SINE Alu -16 295 1 8858 126 22 45 chr4 71807406 71807449 -112481213 + THE1C-int LTR MaLR 1522 1564 -16 1476 172 154 12 chr4 71807460 71807798 -112480864 + MSTA LTR MaLR 41 426 -2 713 247 65 20 chr4 71808295 71808541 -112480121 - MER46C DNA MER2_type 0 338 82 1566 170 147 20 chr4 71808541 71808936 -112479726 + MER31B LTR ERV1 1 445 -21 273 239 0 0 chr4 71808955 71809022 -112479640 - MER46C DNA MER2_type -252 86 20 22 0 0 0 chr4 71809471 71809493 -112479169 + AT_rich Low_complexity Low_complexity 1 22 0 261 285 118 21 chr4 71810194 71810338 -112478324 + L2 LINE L2 2550 2707 -607 1083 284 90 52 chr4 71810612 71811582 -112477080 + HAL1 LINE L1 762 1768 -739 * 8699 143 55 21 chr4 71811572 71811716 -112476946 + L1M1 LINE L1 16 154 -7411 2519 90 56 3 chr4 71811716 71812072 -112476590 + MER51B LTR ERV1 1 375 -2 8699 143 55 21 chr4 71812072 71812830 -112475832 + L1M1 LINE L1 154 885 -6680 1975 135 0 85 chr4 71812830 71812968 -112475694 + AluSx SINE Alu 1 149 -163 2302 94 3 0 chr4 71812968 71813265 -112475397 + AluSg SINE Alu 1 298 -12 1975 135 0 85 chr4 71813265 71813467 -112475195 + AluSx SINE Alu 149 312 0 8699 143 55 21 chr4 71813467 71815253 -112473409 + L1M1 LINE L1 885 2857 -4708 2096 117 3 42 chr4 71815528 71815835 -112472827 - AluSx SINE Alu -17 295 1 26 50 0 0 chr4 71815884 71815924 -112472738 + AT_rich Low_complexity Low_complexity 1 40 0 2942 168 68 11 chr4 71816012 71816678 -112471984 - L1MB7 LINE L1 -16 6168 5465 247 263 181 31 chr4 71817163 71817323 -112471339 + L1ME3A LINE L1 5979 6162 -8 2209 121 0 3 chr4 71817407 71817712 -112470950 - AluSg SINE Alu -6 304 1 534 118 69 0 chr4 71817754 71817856 -112470806 + L1MA8 LINE L1 6182 6290 -1 1342 168 21 12 chr4 71817856 71818045 -112470617 + L1M4 LINE L1 5110 5296 -882 2045 169 0 3 chr4 71818045 71818347 -112470315 + AluJo SINE Alu 1 301 -11 1342 168 21 12 chr4 71818347 71818561 -112470101 + L1M4 LINE L1 5296 5516 -662 2317 87 0 13 chr4 71819018 71819328 -112469334 - AluY SINE Alu -5 306 1 228 237 26 13 chr4 71819599 71819675 -112468987 + (TA)n Simple_repeat Simple_repeat 2 78 0 13199 126 7 13 chr4 71819735 71823049 -112465613 + L1P3 LINE L1 2 3294 -3167 2607 102 49 47 chr4 71824137 71824608 -112464054 + L1MA2 LINE L1 2961 3432 -4133 552 88 38 0 chr4 71824608 71824688 -112463974 + HY4 scRNA scRNA 11 93 0 15921 149 21 18 chr4 71824688 71828867 -112459795 + L1MA2 LINE L1 3413 7608 -115 2392 92 0 0 chr4 71829007 71829311 -112459351 + AluY SINE Alu 1 304 -7 2265 112 3 6 chr4 71829694 71830007 -112458655 + AluSp SINE Alu 1 312 -1 2559 48 3 16 chr4 71830323 71830633 -112458029 + AluY SINE Alu 1 306 -5 763 283 41 20 chr4 71831326 71831570 -112457092 + MIR SINE MIR 6 254 -8 2291 157 63 63 chr4 71832246 71832750 -112455912 + MLT1D LTR MaLR 2 505 0 415 232 74 0 chr4 71832804 71832899 -112455763 - L2 LINE L2 -2 3270 3169 246 238 191 32 chr4 71832899 71833025 -112455637 - L2 LINE L2 -1 3312 3167 396 186 0 124 chr4 71833199 71833328 -112455334 + MER3 DNA MER1_type 96 208 -1 705 231 160 23 chr4 71833345 71833601 -112455061 + MLT1J LTR MaLR 205 495 -16 248 280 167 0 chr4 71833639 71833771 -112454891 - MIR SINE MIR -3 259 106 323 377 48 40 chr4 71833930 71834158 -112454504 + MLT1L LTR MaLR 24 253 -362 608 237 119 43 chr4 71834185 71834438 -112454224 + MLT1L LTR MaLR 344 615 0 521 261 0 0 chr4 71836761 71836872 -112451790 + MER5B DNA MER1_type 68 178 0 1649 88 56 0 chr4 71837907 71838158 -112450504 + L1MA8 LINE L1 6024 6288 -3 321 313 100 13 chr4 71838405 71838555 -112450107 - MIR3 SINE MIR -7 201 39 711 313 93 24 chr4 71838840 71839094 -112449568 + MLT1K LTR MaLR 64 360 -228 1818 169 3 13 chr4 71839094 71839402 -112449260 - AluJb SINE Alu -3 309 5 711 313 93 24 chr4 71839402 71839534 -112449128 + MLT1K LTR MaLR 360 479 -109 1825 190 35 15 chr4 71839534 71839940 -112448722 - Charlie1b DNA MER1_type -2 521 108 1834 90 6 117 chr4 71840335 71840668 -112447994 - AluSx SINE Alu -16 296 1 2139 120 10 10 chr4 71840888 71841197 -112447465 + AluSx SINE Alu 3 311 -1 222 279 0 16 chr4 71841481 71841542 -112447120 + GA-rich Low_complexity Low_complexity 3 62 0 2547 66 0 0 chr4 71841610 71841914 -112446748 + AluY SINE Alu 1 304 -7 229 289 58 29 chr4 71842291 71842395 -112446267 - L2 LINE L2 0 3313 3207 352 314 47 70 chr4 71842695 71842990 -112445672 - L2 LINE L2 -188 3084 2770 23 33 0 0 chr4 71843283 71843313 -112445349 + AT_rich Low_complexity Low_complexity 1 30 0 2093 82 3 69 chr4 71843748 71844066 -112444596 - AluSq SINE Alu -16 297 1 279 250 52 35 chr4 71844186 71844302 -112444360 + MLT1F1-int LTR MaLR 1254 1371 0 504 156 0 0 chr4 71844304 71844381 -112444281 + MLT1F1 LTR MaLR 2 78 -489 2519 248 202 43 chr4 71844427 71845618 -112443044 + L1MC4 LINE L1 5956 6955 -1087 2120 130 3 3 chr4 71845618 71845918 -112442744 + AluSx SINE Alu 1 300 -12 2519 248 202 43 chr4 71845918 71846509 -112442153 + L1MC4 LINE L1 6955 8042 0 1321 113 34 25 chr4 71846512 71846695 -112441967 + L1PA10 LINE L1 5960 6147 -21 180 0 0 0 chr4 71846695 71846715 -112441947 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 1321 113 34 25 chr4 71846715 71846735 -112441927 + L1PA10 LINE L1 6147 6165 -3 4130 41 0 0 chr4 71847337 71847800 -112440862 + L1PA5 LINE L1 5692 6154 0 534 283 0 26 chr4 71848205 71848357 -112440305 + MER5B DNA MER1_type 1 148 -30 257 368 90 0 chr4 71848850 71849016 -112439646 - L2 LINE L2 -2442 872 692 729 232 142 23 chr4 71849505 71849876 -112438786 + LTR33A LTR ERVL 101 504 -19 309 338 13 39 chr4 71849893 71850047 -112438615 - L2 LINE L2 -693 2621 2472 21 82 0 0 chr4 71850627 71850676 -112437986 + AT_rich Low_complexity Low_complexity 1 49 0 204 40 0 0 chr4 71851754 71851779 -112436883 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 849 150 54 0 chr4 71851977 71852124 -112436538 + BC200 scRNA scRNA 2 156 -44 608 284 91 32 chr4 71852129 71852537 -112436125 + HAL1b LINE L1 99 530 -818 949 290 70 37 chr4 71853243 71854292 -112434370 + L1M4 LINE L1 2149 3231 -2915 44 0 0 0 chr4 71855285 71855329 -112433333 + AT_rich Low_complexity Low_complexity 1 44 0 366 118 0 0 chr4 71855329 71855380 -112433282 - MER66A LTR ERV1 -140 338 288 219 69 0 0 chr4 71855398 71855427 -112433235 + (TA)n Simple_repeat Simple_repeat 2 30 0 7145 35 4 0 chr4 71855427 71856265 -112432397 - L1PA4 LINE L1 -7 6148 5308 2376 85 7 0 chr4 71856786 71857093 -112431569 + AluY SINE Alu 3 311 0 1691 169 21 21 chr4 71857424 71857714 -112430948 - AluJb SINE Alu -17 295 6 2391 103 0 0 chr4 71857925 71858226 -112430436 - AluSq SINE Alu -12 301 1 210 394 28 14 chr4 71859160 71859373 -112429289 + L2 LINE L2 2494 2709 -605 315 240 0 27 chr4 71859718 71859793 -112428869 + MIR SINE MIR 48 120 -142 1919 159 7 0 chr4 71859986 71860288 -112428374 + AluJo SINE Alu 1 304 -8 343 280 129 38 chr4 71860498 71860630 -112428032 + MIR3 SINE MIR 1 144 -64 806 183 0 0 chr4 71861197 71861323 -112427339 + FLAM_C SINE Alu 1 126 -17 2010 128 35 0 chr4 71861345 71861633 -112427029 + AluSx SINE Alu 1 298 -14 1964 150 0 3 chr4 71862078 71862371 -112426291 + AluJb SINE Alu 21 312 0 473 321 100 25 chr4 71862388 71862628 -112426034 + L3 LINE CR1 1315 1572 -5 1444 179 131 0 chr4 71862798 71863072 -112425590 - AluJb SINE Alu -2 310 1 2694 78 29 0 chr4 71863407 71863752 -112424910 + THE1A LTR MaLR 1 355 0 11272 97 12 23 chr4 71863752 71864322 -112424340 + THE1A-int LTR MaLR 1 576 -1004 8379 44 42 3 chr4 71864322 71865000 -112423662 + LTR13 LTR ERVK 1 730 -277 194 0 39 0 chr4 71865000 71865026 -112423636 + (TC)n Simple_repeat Simple_repeat 2 28 0 8379 44 42 3 chr4 71865026 71865316 -112423346 + LTR13 LTR ERVK 730 1007 0 11272 97 12 23 chr4 71865316 71866342 -112422320 + THE1A-int LTR MaLR 576 1580 0 766 73 0 0 chr4 71866342 71866438 -112422224 + THE1A LTR MaLR 1 96 -259 * 1219 60 26 0 chr4 71866436 71866587 -112422075 + THE1A LTR MaLR 201 355 0 337 317 93 29 chr4 71866592 71866797 -112421865 - L2 LINE L2 -245 3068 2851 344 256 221 25 chr4 71866873 71867072 -112421590 - L2 LINE L2 -469 2845 2608 848 214 32 0 chr4 71867123 71867310 -112421352 + L1MB7 LINE L1 5982 6174 -10 2780 81 31 14 chr4 71867334 71867692 -112420970 - THE1B LTR MaLR 0 364 1 1863 216 88 31 chr4 71868243 71868721 -112419941 - MLT1D LTR MaLR 0 505 1 23 33 0 0 chr4 71869870 71869900 -112418762 + GC_rich Low_complexity Low_complexity 1 30 0 186 244 0 0 chr4 71871352 71871397 -112417265 - L2 LINE L2 0 3313 3269 7323 56 5 23 chr4 71871439 71873050 -112415612 + SVA Other Other 1 1386 0 570 255 110 31 chr4 71873070 71873325 -112415337 - L2 LINE L2 -83 3230 2956 255 289 108 0 chr4 71873481 71873564 -112415098 - L2 LINE L2 -20 3252 3161 242 311 114 61 chr4 71873593 71873725 -112414937 + MIR3 SINE MIR 9 147 -61 224 235 20 0 chr4 71874217 71874268 -112414394 + L2 LINE L2 3246 3297 -16 490 226 147 49 chr4 71874427 71874631 -112414031 - L2 LINE L2 -5 3308 3085 972 186 130 90 chr4 71874637 71874991 -112413671 - MER87 LTR ERV1 0 541 174 260 254 173 9 chr4 71875134 71875244 -112413418 - L2 LINE L2 -248 3065 2938 2326 74 0 20 chr4 71875426 71875724 -112412938 - AluY SINE Alu -19 292 1 835 147 0 80 chr4 71875838 71875988 -112412674 + FLAM_C SINE Alu 2 139 -4 2165 94 31 3 chr4 71875993 71876279 -112412383 + AluSx SINE Alu 1 294 -18 670 205 85 1 chr4 71876811 71877011 -112411651 - MLT2B2 LTR ERVL -19 534 215 352 207 171 9 chr4 71877026 71877137 -112411525 - L1ME2 LINE L1 -62 6102 5974 586 281 153 37 chr4 71877414 71877844 -112410818 - L2 LINE L2 -61 3252 2776 40 37 0 0 chr4 71880177 71880231 -112408431 + AT_rich Low_complexity Low_complexity 1 54 0 200 214 255 31 chr4 71880397 71880495 -112408167 - L2 LINE L2 -4 3309 3190 1209 273 50 1 chr4 71880530 71880919 -112407743 + LTR16C LTR ERVL 32 489 -2 2781 184 53 12 chr4 71882424 71882994 -112405668 + L1MB7 LINE L1 5528 6120 -64 2164 116 7 0 chr4 71883108 71883402 -112405260 - AluSq SINE Alu -17 296 1 559 230 64 142 chr4 71883524 71883720 -112404942 + L1ME2 LINE L1 5851 6047 -117 244 61 0 0 chr4 71883720 71883753 -112404909 + MER3 DNA MER1_type 17 49 -160 559 230 64 142 chr4 71883753 71883854 -112404808 + L1ME2 LINE L1 6047 6154 -10 1068 183 6 0 chr4 71883993 71884157 -112404505 - FAM SINE Alu -10 165 1 3146 127 6 22 chr4 71884361 71884849 -112403813 - L1MB3 LINE L1 -9 6890 6411 2333 102 0 0 chr4 71884876 71885170 -112403492 - AluSq SINE Alu -19 294 1 3179 206 39 39 chr4 71885187 71885429 -112403233 - L1MB3 LINE L1 -477 6419 6178 1549 159 79 11 chr4 71885429 71885706 -112402956 - AluJb SINE Alu -12 300 5 3179 206 39 39 chr4 71885706 71886203 -112402459 - L1MB3 LINE L1 -718 6178 5682 2244 113 0 0 chr4 71886203 71886496 -112402166 - AluSq SINE Alu -20 293 1 3179 206 39 39 chr4 71886496 71887000 -112401662 - L1MB3 LINE L1 -1214 5682 5176 186 316 53 21 chr4 71887174 71887269 -112401393 + MIR SINE MIR 61 158 -104 937 99 0 0 chr4 71887421 71887542 -112401120 + MER51A LTR ERV1 1 121 -513 982 97 0 15 chr4 71887542 71887676 -112400986 + AluY SINE Alu 1 132 -179 2775 135 58 47 chr4 71887681 71888268 -112400394 + MER51A LTR ERV1 105 625 -9 898 209 99 9 chr4 71889117 71889328 -112399334 + MIR SINE MIR 12 241 -21 3148 168 11 28 chr4 71890617 71891187 -112397475 + L1MB7 LINE L1 5623 6182 -2 381 311 39 0 chr4 71891357 71891460 -112397202 - MER91C DNA MER1_type -33 107 1 180 261 22 22 chr4 71892011 71892057 -112396605 - L3b LINE CR1 -258 1325 1280 31 0 0 0 chr4 71892072 71892103 -112396559 + AT_rich Low_complexity Low_complexity 1 31 0 351 0 0 0 chr4 71893485 71893524 -112395138 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1699 174 4 0 chr4 71893531 71893807 -112394855 - AluJo SINE Alu -35 277 1 16929 82 9 14 chr4 71893943 71896966 -112391696 - L1PA7 LINE L1 -2 6152 3137 222 105 0 0 chr4 71897086 71897124 -112391538 + (TA)n Simple_repeat Simple_repeat 1 38 0 2260 93 0 42 chr4 71897142 71897310 -112391352 - AluSg SINE Alu -11 299 148 2314 99 0 0 chr4 71897310 71897603 -112391059 - AluY SINE Alu -18 293 1 2260 93 0 42 chr4 71897603 71897745 -112390917 - AluSg SINE Alu -162 148 2 502 174 0 0 chr4 71897746 71897832 -112390830 - L1MB3 LINE L1 -2428 4434 4349 16689 171 32 20 chr4 71897833 71902236 -112386426 - L1MB3 LINE L1 -2407 4455 1 425 278 108 78 chr4 71902443 71902803 -112385859 + L1MC4a LINE L1 5563 5933 -1875 840 154 0 0 chr4 71903005 71903128 -112385534 + FLAM_C SINE Alu 1 123 -20 256 162 0 59 chr4 71903881 71903949 -112384713 + (TTTAA)n Simple_repeat Simple_repeat 3 66 0 23 0 0 0 chr4 71904234 71904257 -112384405 + AT_rich Low_complexity Low_complexity 1 23 0 675 233 110 134 chr4 71904340 71904796 -112383866 + MLT1J2 LTR MaLR 2 450 0 223 300 14 0 chr4 71906475 71906545 -112382117 + (TA)n Simple_repeat Simple_repeat 1 71 0 1950 94 0 16 chr4 71908401 71908657 -112380005 - AluSg SINE Alu -12 298 47 246 165 144 93 chr4 71910767 71910864 -112377798 - MIR SINE MIR 0 262 161 318 250 76 0 chr4 71910902 71910994 -112377668 + L2 LINE L2 2196 2294 -1020 636 225 0 6 chr4 71911216 71911376 -112377286 + L2 LINE L2 2290 2448 -866 577 240 162 57 chr4 71911385 71911924 -112376738 + L2 LINE L2 2658 3313 0 1206 134 52 5 chr4 71912106 71912300 -112376362 + AluJb SINE Alu 86 288 -24 995 154 6 6 chr4 71912315 71912471 -112376191 - MER1B DNA MER1_type -105 192 37 217 282 213 20 chr4 71912963 71913165 -112375497 - L2 LINE L2 -874 2440 2200 26 30 0 0 chr4 71913366 71913399 -112375263 + AT_rich Low_complexity Low_complexity 1 33 0 615 85 0 0 chr4 71913828 71913910 -112374752 + FLAM_C SINE Alu 30 111 -32 409 266 59 9 chr4 71914619 71914805 -112373857 - MIR SINE MIR -14 248 2 393 277 140 53 chr4 71915230 71916140 -112372522 + L1ME3A LINE L1 4914 5937 -233 289 212 30 0 chr4 71916288 71916354 -112372308 - MER5A DNA MER1_type -95 94 27 403 263 83 79 chr4 71916749 71916977 -112371685 + L2 LINE L2 3044 3272 0 2368 99 0 3 chr4 71917189 71917492 -112371170 - AluSg SINE Alu -8 302 1 2871 112 97 13 chr4 71917669 71918142 -112370520 - L1MA4A LINE L1 -4 6299 5787 472 149 96 0 chr4 71918142 71918236 -112370426 + L1 LINE L1 5228 5330 -816 24 53 0 0 chr4 71918481 71918519 -112370143 + AT_rich Low_complexity Low_complexity 1 38 0 242 163 20 20 chr4 71918530 71918579 -112370083 + L1MC/D LINE L1 5557 5605 -516 336 24 0 0 chr4 71918600 71918641 -112370021 + (TG)n Simple_repeat Simple_repeat 2 42 0 253 250 0 0 chr4 71918644 71918692 -112369970 + L1MC/D LINE L1 5597 5644 -2164 536 198 0 74 chr4 71918695 71918816 -112369846 + MER20 DNA MER1_type 108 219 0 1109 212 20 0 chr4 71918818 71919021 -112369641 - MLT1F1 LTR MaLR -353 214 8 409 263 57 164 chr4 71919029 71919779 -112368883 - MLT1F1-int LTR MaLR -1 1370 701 780 256 85 18 chr4 71920033 71920480 -112368182 - MLT1F1-int LTR MaLR -770 601 1 2320 175 96 70 chr4 71920480 71921002 -112367660 - MLT1F1 LTR MaLR 0 567 29 2233 94 3 7 chr4 71921002 71921300 -112367362 - AluY SINE Alu -14 297 1 2320 175 96 70 chr4 71921300 71921330 -112367332 - MLT1F1 LTR MaLR -538 29 1 1349 304 72 7 chr4 71921572 71922000 -112366662 + LTR16B LTR ERVL 9 464 0 1201 210 47 0 chr4 71922165 71922422 -112366240 - MER63 DNA MER1_type 0 1060 792 801 304 168 0 chr4 71922443 71922801 -112365861 + ERVL LTR ERVL 3046 3463 -2301 875 282 15 31 chr4 71922802 71923061 -112365601 - MIR SINE MIR -6 256 2 1164 319 53 16 chr4 71923231 71923810 -112364852 + ERVL LTR ERVL 3660 4260 -1394 473 207 9 35 chr4 71924111 71924227 -112364435 + ERVL LTR ERVL 4354 4466 -1298 518 255 67 22 chr4 71924231 71924499 -112364163 + ERVL LTR ERVL 4685 5028 -736 462 333 35 6 chr4 71924615 71924789 -112363873 + ERVL LTR ERVL 5201 5379 -385 321 277 22 87 chr4 71925395 71925579 -112363083 + LTR67 LTR ERVL 265 436 -121 12347 114 27 16 chr4 71925624 71931834 -112356828 + L1PA8 LINE L1 6 6483 -4 834 247 0 0 chr4 71932049 71932203 -112356459 - FRAM SINE Alu -21 155 2 28 0 0 0 chr4 71932214 71932242 -112356420 + AT_rich Low_complexity Low_complexity 1 28 0 2478 155 27 0 chr4 71932338 71932745 -112355917 - MSTB1 LTR MaLR 0 432 15 186 43 0 0 chr4 71933772 71933795 -112354867 + (CA)n Simple_repeat Simple_repeat 2 24 0 8231 32 5 0 chr4 71934021 71934914 -112353748 + MER11D LTR ERVK 1 897 0 34 0 0 0 chr4 71935181 71935215 -112353447 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr4 71936826 71936847 -112351815 + AT_rich Low_complexity Low_complexity 1 21 0 661 239 91 20 chr4 71938800 71938997 -112349665 + MIR SINE MIR 6 216 -46 2513 57 0 19 chr4 71939161 71939477 -112349185 - AluY SINE Alu -1 310 1 1090 264 85 64 chr4 71939835 71940048 -112348614 + L2 LINE L2 2864 3071 -242 1837 87 42 0 chr4 71940048 71940323 -112348339 + AluSx SINE Alu 32 316 0 1090 264 85 64 chr4 71940323 71940542 -112348120 + L2 LINE L2 3071 3308 -5 1094 169 27 67 chr4 71940547 71940610 -112348052 - MER20 DNA MER1_type -3 216 152 306 107 0 0 chr4 71940610 71940666 -112347996 + (TG)n Simple_repeat Simple_repeat 2 57 0 1094 169 27 67 chr4 71940666 71940827 -112347835 - MER20 DNA MER1_type -67 152 1 248 230 104 104 chr4 71941092 71941227 -112347435 + L2 LINE L2 3138 3272 0 182 233 17 17 chr4 71941403 71941463 -112347199 - L2 LINE L2 -296 2976 2917 3913 250 102 16 chr4 71941559 71942087 -112346575 + L1MEc LINE L1 63 545 -2031 1853 152 0 43 chr4 71942087 71942390 -112346272 - AluJo SINE Alu -22 290 1 3913 250 102 16 chr4 71942390 71943299 -112345363 + L1MEc LINE L1 545 1675 -901 1466 192 19 4 chr4 71943302 71943573 -112345089 + Tigger7 DNA MER2_type 5 279 -2208 453 181 9 76 chr4 71943559 71943664 -112344998 + Tigger7 DNA MER2_type 2390 2487 0 * 498 246 29 7 chr4 71943665 71943803 -112344859 + L1MEc LINE L1 1620 1760 -4636 646 249 201 30 chr4 71944003 71944341 -112344321 + Tigger8 DNA MER2_type 239 634 -32 1098 299 109 21 chr4 71946161 71946640 -112342022 + MLT1K LTR MaLR 43 563 -25 1722 148 26 62 chr4 71946879 71947035 -112341627 - AluJb SINE Alu -17 295 135 189 0 0 0 chr4 71947035 71947056 -112341606 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 2220 101 3 7 chr4 71947057 71947345 -112341317 - AluSg SINE Alu -23 287 1 1722 148 26 62 chr4 71947345 71947491 -112341171 - AluJb SINE Alu -176 136 2 358 294 83 78 chr4 71948470 71948615 -112340047 + L2 LINE L2 2615 2758 -514 2743 153 16 40 chr4 71948615 71949118 -112339544 - L1MB7 LINE L1 -19 6165 5675 358 294 83 78 chr4 71949118 71949397 -112339265 + L2 LINE L2 2758 3050 -222 2467 268 203 15 chr4 71949476 71950811 -112337851 - L2 LINE L2 -3 3310 1719 529 199 46 66 chr4 71950883 71951034 -112337628 - MER21B LTR ERV1 -618 245 98 540 188 31 10 chr4 71951070 71951166 -112337496 - MER21B LTR ERV1 -765 98 1 1851 180 0 0 chr4 71951784 71952090 -112336572 + AluSx SINE Alu 1 306 -6 22 0 0 0 chr4 71952140 71952162 -112336500 + AT_rich Low_complexity Low_complexity 1 22 0 757 202 8 0 chr4 71952319 71952443 -112336219 + FRAM SINE Alu 1 125 -51 894 111 146 29 chr4 71952448 71952619 -112336043 + LTR48 LTR ERV1 3 193 -594 7441 155 37 17 chr4 71953150 71953613 -112335049 - Ricksha DNA DNA -13 3233 2781 1602 191 3 16 chr4 71953613 71953917 -112334745 + AluJo SINE Alu 1 300 -12 7441 155 37 17 chr4 71953917 71954802 -112333860 - Ricksha DNA DNA -465 2781 1889 5053 145 13 11 chr4 71954851 71955683 -112332979 - L1PB4 LINE L1 -1 6155 5322 578 116 81 23 chr4 71955683 71955769 -112332893 - AluJb SINE Alu -17 295 205 5042 214 11 5 chr4 71955781 71956888 -112331774 - L1PB4 LINE L1 -815 5331 4218 4124 175 13 13 chr4 71956888 71957602 -112331060 - Ricksha DNA DNA -1343 1903 1190 2706 146 38 0 chr4 71957604 71958030 -112330632 - Ricksha DNA DNA -1546 500 59 960 310 118 9 chr4 71958181 71958529 -112330133 + MLT1K LTR MaLR 10 395 -193 186 43 0 0 chr4 71958731 71958754 -112329908 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 698 253 160 39 chr4 71958755 71959302 -112329360 - L2 LINE L2 -15 3298 2646 585 264 101 65 chr4 71959302 71959689 -112328973 + MLT1J LTR MaLR 2 402 -109 213 308 120 0 chr4 71961049 71961166 -112327496 + MIR SINE MIR 20 150 -58 302 286 101 25 chr4 71961166 71961285 -112327377 + Charlie8 DNA MER1_type 1 128 -2289 944 213 19 32 chr4 71961298 71961514 -112327148 - MIR SINE MIR -42 220 8 340 274 73 49 chr4 71961537 71961701 -112326961 + Charlie8 DNA MER1_type 109 276 -2141 235 321 0 0 chr4 71962465 71962521 -112326141 - MIR3 SINE MIR -11 197 142 1821 127 9 57 chr4 71962522 71962838 -112325824 - AluJo SINE Alu 0 312 12 1012 197 0 11 chr4 71962846 71963024 -112325638 - AluJb SINE Alu -2 310 135 2485 203 97 37 chr4 71963284 71963954 -112324708 + L1MD2 LINE L1 5640 6349 -10 524 282 63 24 chr4 71964012 71964264 -112324398 - MIR SINE MIR 0 262 1 21 0 0 0 chr4 71964802 71964823 -112323839 + GC_rich Low_complexity Low_complexity 1 21 0 504 271 69 27 chr4 71965637 71965825 -112322837 + MIR SINE MIR 63 258 -4 6209 102 4 20 chr4 71966106 71967097 -112321565 + L1PB1 LINE L1 5136 6113 -38 180 77 0 0 chr4 71967097 71967123 -112321539 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1490 116 0 5 chr4 71967426 71967649 -112321013 - AluSg/x SINE Alu 0 306 85 186 71 0 0 chr4 71967863 71967891 -112320771 + (GA)n Simple_repeat Simple_repeat 1 28 0 300 274 167 0 chr4 71968044 71968128 -112320534 + L2 LINE L2 3171 3268 -4 212 280 253 0 chr4 71968108 71968183 -112320479 - L2 LINE L2 -10 3303 3210 * 4988 164 25 23 chr4 71968200 71968466 -112320196 + L1MB4 LINE L1 4931 5195 -985 2542 73 0 0 chr4 71968466 71968769 -112319893 + AluY SINE Alu 1 303 -8 4988 164 25 23 chr4 71968769 71969744 -112318918 + L1MB4 LINE L1 5195 6174 -6 1231 212 58 0 chr4 71969862 71970140 -112318522 + L1ME3 LINE L1 5869 6162 0 203 177 113 32 chr4 71970752 71970814 -112317848 - L2 LINE L2 -63 3250 3184 953 261 180 8 chr4 71971114 71971470 -112317192 + LTR33A LTR ERVL 99 515 -8 316 299 132 45 chr4 71971477 71971788 -112316874 + L1MB7 LINE L1 5610 5947 -237 2436 88 3 0 chr4 71971842 71972149 -112316513 + AluSg SINE Alu 1 308 -2 6203 60 5 0 chr4 71972157 71972917 -112315745 + L1PA7 LINE L1 5371 6134 -20 930 209 63 19 chr4 71973422 71973628 -112315034 - MLT1A1 LTR MaLR 0 365 151 268 286 62 18 chr4 71973641 71973753 -112314909 + MIR SINE MIR 92 208 -54 1421 160 44 28 chr4 71973755 71974074 -112314588 - MER33 DNA MER1_type -3 321 1 196 274 20 0 chr4 71974076 71974127 -112314535 + MIR SINE MIR 205 256 -6 2402 175 68 2 chr4 71974144 71974544 -112314118 - MSTB LTR MaLR 0 426 1 8684 143 60 29 chr4 71974911 71975675 -112312987 + L1MB3 LINE L1 6 745 -5639 195 69 0 0 chr4 71975675 71975704 -112312958 + (CAA)n Simple_repeat Simple_repeat 1 29 0 8684 143 60 29 chr4 71975704 71976539 -112312123 + L1MB3 LINE L1 745 1654 -4730 5212 171 51 5 chr4 71976527 71977937 -112310725 + L1MB3 LINE L1 4941 6417 -2 * 184 313 48 12 chr4 71978021 71978104 -112310558 + L2 LINE L2 2302 2387 -927 208 343 52 15 chr4 71978537 71978671 -112309991 + L2 LINE L2 2748 2886 -428 3338 103 2 0 chr4 71978689 71979116 -112309546 + MSTA LTR MaLR 1 428 0 180 97 0 0 chr4 71979287 71979318 -112309344 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2689 109 37 73 chr4 71979318 71979485 -112309177 + MER4E LTR ERV1 9 180 -586 2543 74 0 0 chr4 71979485 71979795 -112308867 + AluY SINE Alu 1 310 -1 2689 109 37 73 chr4 71979795 71979978 -112308684 + MER4E LTR ERV1 180 368 -398 201 94 0 0 chr4 71979978 71980010 -112308652 + (CACCC)n Simple_repeat Simple_repeat 3 34 0 2689 109 37 73 chr4 71980010 71980251 -112308411 + MER4E LTR ERV1 368 766 0 1113 210 21 9 chr4 71980661 71980894 -112307768 + MIR SINE MIR 19 254 -8 432 234 112 48 chr4 71981043 71981231 -112307431 + MIR SINE MIR 31 230 -32 22 0 0 0 chr4 71981295 71981317 -112307345 + AT_rich Low_complexity Low_complexity 1 22 0 1440 80 0 0 chr4 71981334 71981521 -112307141 - AluY SINE Alu -1 310 124 2046 154 148 0 chr4 71981649 71981833 -112306829 + MSTA LTR MaLR 1 156 -272 783 66 0 0 chr4 71981833 71981939 -112306723 + (TCTCCC)n Simple_repeat Simple_repeat 3 108 0 2046 154 148 0 chr4 71981939 71982125 -112306537 + MSTA LTR MaLR 156 426 -2 9800 148 10 39 chr4 71982129 71983754 -112304908 + MSTA-int LTR MaLR 3 1580 0 2310 131 133 13 chr4 71983754 71984136 -112304526 + MSTA LTR MaLR 1 428 0 1378 293 14 36 chr4 71984461 71984901 -112303761 + LTR16B LTR ERVL 35 464 0 23 0 0 0 chr4 71985110 71985133 -112303529 + AT_rich Low_complexity Low_complexity 1 23 0 432 308 81 24 chr4 71986119 71986212 -112302450 - MIR SINE MIR -6 256 170 1843 169 0 13 chr4 71986212 71986513 -112302149 - AluJb SINE Alu -15 297 1 432 308 81 24 chr4 71986513 71986630 -112302032 - MIR SINE MIR -92 170 34 576 319 25 10 chr4 71987386 71987590 -112301072 + L1MC/D LINE L1 5518 5724 -2084 35 71 0 0 chr4 71987678 71987748 -112300914 + AT_rich Low_complexity Low_complexity 1 70 0 221 171 0 0 chr4 71987761 71987802 -112300860 + (TA)n Simple_repeat Simple_repeat 2 42 0 2249 95 0 16 chr4 71987914 71988219 -112300443 + AluY SINE Alu 1 300 -11 1149 133 6 0 chr4 71988219 71988377 -112300285 + AluSg/x SINE Alu 132 290 -20 1971 138 3 22 chr4 71988605 71988923 -112299739 - AluSx SINE Alu 0 312 1 507 208 104 35 chr4 71989194 71989367 -112299295 - MIR SINE MIR 0 262 78 242 207 17 17 chr4 71989390 71989448 -112299214 + MIR SINE MIR 159 216 -46 2352 103 0 3 chr4 71990397 71990707 -112297955 - AluSc SINE Alu 0 309 1 210 238 0 0 chr4 71991065 71991107 -112297555 + MIR SINE MIR 27 68 -194 351 275 81 64 chr4 71991415 71991651 -112297011 + L1ME4a LINE L1 5255 5494 -2314 1016 189 53 104 chr4 71991756 71991894 -112296768 + MER2 DNA MER2_type 2 145 -200 2205 120 0 7 chr4 71991894 71992195 -112296467 - AluSc SINE Alu -10 299 1 1016 189 53 104 chr4 71992195 71992394 -112296268 + MER2 DNA MER2_type 145 322 -23 239 189 168 11 chr4 71992422 71992517 -112296145 + L1ME4a LINE L1 5634 5743 -378 1748 145 110 61 chr4 71992601 71993028 -112295634 - LTR7 LTR ERV1 -2 448 1 2414 132 37 65 chr4 71993028 71993386 -112295276 + MSTA LTR MaLR 8 374 -54 2357 82 0 0 chr4 71993386 71993680 -112294982 - AluSc SINE Alu -15 294 1 2158 112 7 0 chr4 71993680 71993983 -112294679 - AluY SINE Alu -5 306 1 2414 132 37 65 chr4 71993983 71994056 -112294606 + MSTA LTR MaLR 372 428 0 318 284 61 14 chr4 71994153 71994301 -112294361 + L1ME4a LINE L1 5943 6097 -24 718 125 58 0 chr4 71994344 71994464 -112294198 - L1MB4 LINE L1 -65 6115 5989 248 143 20 0 chr4 71994549 71994598 -112294064 - L1MB7 LINE L1 -5 6179 6130 334 277 69 63 chr4 71995750 71995909 -112292753 + MIR SINE MIR 67 226 -36 253 163 23 0 chr4 71996195 71996238 -112292424 + MIR SINE MIR 4 47 -215 1904 163 27 85 chr4 71996356 71996607 -112292055 - MLT1B LTR MaLR -2 388 169 1603 168 6 41 chr4 71996607 71996922 -112291740 + AluJb SINE Alu 9 312 0 1904 163 27 85 chr4 71996922 71997082 -112291580 - MLT1B LTR MaLR -221 169 1 1042 229 14 63 chr4 71997499 71997729 -112290933 - L1MEc LINE L1 -3913 2483 2276 2315 81 0 10 chr4 71997729 71998037 -112290625 - AluY SINE Alu -6 305 1 1042 229 14 63 chr4 71998037 71998169 -112290493 - L1MEc LINE L1 -4120 2276 2139 503 202 0 0 chr4 71999412 71999511 -112289151 - L1PBa LINE L1 -6764 99 1 1148 165 100 39 chr4 71999958 72000218 -112288444 - Charlie1b DNA MER1_type -200 323 48 2092 125 7 0 chr4 72000359 72000655 -112288007 - AluSp SINE Alu -15 298 1 2382 70 0 35 chr4 72001038 72001352 -112287310 - AluY SINE Alu -7 304 2 1240 159 49 13 chr4 72001352 72001578 -112287084 + MLT1A1 LTR MaLR 130 363 -2 1812 124 33 46 chr4 72052269 72052576 -112236086 + AluSp SINE Alu 1 303 -10 823 244 58 13 chr4 72052590 72052815 -112235847 - MIR SINE MIR -14 248 14 2170 113 3 7 chr4 72053186 72053486 -112235176 - AluSq SINE Alu -14 299 1 1894 101 15 8 chr4 72053586 72053853 -112234809 - AluSp SINE Alu -4 309 41 728 95 0 0 chr4 72053925 72054030 -112234632 - L1MA6 LINE L1 0 6300 6196 658 226 57 40 chr4 72054267 72054444 -112234218 - MIR SINE MIR -69 193 14 728 161 0 0 chr4 72055104 72055222 -112233440 + Tigger4(Zombi) DNA MER2_type 2614 2731 0 899 336 77 36 chr4 72055248 72055416 -112233246 - L3 LINE CR1 -7 1570 1410 1280 62 0 19 chr4 72055416 72055560 -112233102 + L1PA5 LINE L1 5996 6138 -16 213 65 0 0 chr4 72055560 72055591 -112233071 + (TA)n Simple_repeat Simple_repeat 2 32 0 1280 62 0 19 chr4 72055591 72055607 -112233055 + L1PA5 LINE L1 6138 6153 -1 899 336 77 36 chr4 72055607 72056025 -112232637 - L3 LINE CR1 -167 1410 960 5637 112 21 8 chr4 72056072 72056908 -112231754 + L1MA4A LINE L1 5455 6301 -2 1893 160 0 13 chr4 72056955 72057268 -112231394 + AluJb SINE Alu 1 309 -3 1778 206 0 0 chr4 72057388 72057699 -112230963 + AluJo SINE Alu 1 311 -1 1315 192 88 88 chr4 72059195 72059560 -112229102 - MLT1A2 LTR MaLR -4 370 6 6343 91 23 10 chr4 72059560 72059846 -112228816 + L1MA1 LINE L1 5421 5702 -600 2142 112 3 14 chr4 72059846 72060184 -112228478 - AluSg SINE Alu 0 310 1 6343 91 23 10 chr4 72060184 72060740 -112227922 + L1MA1 LINE L1 5702 6277 -25 408 20 0 0 chr4 72060740 72060789 -112227873 + (TA)n Simple_repeat Simple_repeat 1 49 0 6343 91 23 10 chr4 72060789 72060816 -112227846 + L1MA1 LINE L1 6277 6302 0 186 43 0 0 chr4 72062090 72062113 -112226549 + (TC)n Simple_repeat Simple_repeat 2 24 0 199 114 45 0 chr4 72062150 72062194 -112226468 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 1140 200 14 9 chr4 72062594 72062809 -112225853 - MER20 DNA MER1_type 0 219 4 1695 178 3 14 chr4 72062919 72063211 -112225451 - AluSx SINE Alu -23 289 1 310 265 0 0 chr4 72063221 72063289 -112225373 - L2 LINE L2 -19 3253 3186 225 353 65 7 chr4 72063725 72063864 -112224798 - L2 LINE L2 -460 2854 2708 958 129 0 14 chr4 72063878 72064018 -112224644 - AluJb SINE Alu -89 223 86 360 309 144 10 chr4 72064025 72064219 -112224443 - L2 LINE L2 -639 2675 2456 464 240 8 48 chr4 72064308 72064433 -112224229 - MIR SINE MIR -110 152 33 234 282 173 0 chr4 72066217 72066327 -112222335 + MIR SINE MIR 66 194 -68 2039 101 0 18 chr4 72066366 72066643 -112222019 + AluSq SINE Alu 3 274 -39 291 28 0 0 chr4 72066643 72066679 -112221983 + (TC)n Simple_repeat Simple_repeat 2 37 0 208 213 128 0 chr4 72067476 72067523 -112221139 + MIR SINE MIR 94 146 -62 181 285 236 0 chr4 72067801 72067924 -112220738 + L3b LINE CR1 1182 1333 -250 232 340 51 32 chr4 72067933 72068089 -112220573 - L2 LINE L2 -15 3298 3140 252 59 0 0 chr4 72068137 72068171 -112220491 + (TG)n Simple_repeat Simple_repeat 1 34 0 2210 120 0 0 chr4 72069057 72069356 -112219306 - AluSx SINE Alu -13 299 1 27 0 0 0 chr4 72069933 72069960 -112218702 + AT_rich Low_complexity Low_complexity 1 27 0 2252 117 0 0 chr4 72069960 72070250 -112218412 - AluSx SINE Alu -22 290 1 1707 178 21 0 chr4 72070284 72070571 -112218091 - AluJo SINE Alu -19 293 1 1221 197 56 31 chr4 72070590 72070704 -112217958 - L1ME2 LINE L1 -1 6163 6053 2394 63 3 16 chr4 72070704 72071007 -112217655 - AluY SINE Alu -11 300 2 1221 197 56 31 chr4 72071007 72071447 -112217215 - L1ME2 LINE L1 -111 6053 5551 2195 176 92 104 chr4 72071482 72072114 -112216548 - MLT1E3 LTR MaLR 0 624 1 834 160 0 0 chr4 72072230 72072355 -112216307 + FRAM SINE Alu 21 145 -31 536 102 23 0 chr4 72072355 72072443 -112216219 + (GGGAGA)n Simple_repeat Simple_repeat 5 94 0 571 260 68 61 chr4 72073011 72073055 -112215607 + Charlie8 DNA MER1_type 33 75 -1342 701 186 53 0 chr4 72073055 72073168 -112215494 - FLAM_A SINE Alu -14 119 1 571 260 68 61 chr4 72073168 72073417 -112215245 + Charlie8 DNA MER1_type 75 1417 0 413 169 0 229 chr4 72073910 72074076 -112214586 - MER5B DNA MER1_type -2 176 49 731 120 32 157 chr4 72074098 72074314 -112214348 - L1MB2 LINE L1 -4 6167 5979 866 149 30 0 chr4 72074343 72074477 -112214185 + AluJo SINE Alu 1 138 -174 1309 203 0 32 chr4 72075800 72076051 -112212611 - AluJb SINE Alu -69 243 1 2451 157 4 111 chr4 72076219 72076778 -112211884 + L1MB3 LINE L1 5663 6161 -22 1795 161 30 10 chr4 72076783 72077088 -112211574 - AluJb SINE Alu -1 311 1 2337 66 3 7 chr4 72077165 72077467 -112211195 + AluSc SINE Alu 5 305 -4 2039 108 0 52 chr4 72077754 72078085 -112210577 + AluSx SINE Alu 2 312 0 1985 103 67 11 chr4 72078813 72079095 -112209567 + AluSx SINE Alu 1 298 -14 27 0 0 0 chr4 72079143 72079170 -112209492 + AT_rich Low_complexity Low_complexity 1 27 0 436 298 84 23 chr4 72079353 72079568 -112209094 + L2 LINE L2 2272 2499 -815 2111 202 35 13 chr4 72079590 72080051 -112208611 + L1ME1 LINE L1 5667 6137 -29 1782 172 26 0 chr4 72080146 72080448 -112208214 + AluJb SINE Alu 1 310 -2 534 223 54 23 chr4 72080554 72080684 -112207978 - L2 LINE L2 0 3313 3180 445 309 52 52 chr4 72080680 72081007 -112207655 + L2 LINE L2 2589 2915 -399 * 1468 146 0 53 chr4 72081247 72081493 -112207169 - MER46A DNA MER2_type 0 236 4 2222 73 4 0 chr4 72082051 72082324 -112206338 - AluY SINE Alu -16 295 22 1165 112 24 0 chr4 72083151 72083320 -112205342 - L1MB2 LINE L1 -3 6168 5996 1944 162 0 3 chr4 72083345 72083648 -112205014 - AluJo SINE Alu -10 302 1 1998 117 40 10 chr4 72083976 72084329 -112204333 - AluJb SINE Alu 0 362 1 347 370 0 0 chr4 72084911 72085019 -112203643 - L2 LINE L2 -16 3256 3149 1626 188 7 17 chr4 72085050 72085337 -112203325 + AluJo SINE Alu 1 284 -28 205 151 38 0 chr4 72085345 72085398 -112203264 + (TAGA)n Simple_repeat Simple_repeat 1 55 0 2002 50 0 0 chr4 72086207 72086447 -112202215 + AluY SINE Alu 72 311 0 432 278 70 29 chr4 72086781 72086958 -112201704 + MIR SINE MIR 5 188 -67 2400 88 0 3 chr4 72088129 72088436 -112200226 - AluSq SINE Alu -7 306 1 2400 74 3 0 chr4 72089617 72089913 -112198749 - AluY SINE Alu -14 297 1 531 328 58 17 chr4 72090073 72090314 -112198348 - MIR SINE MIR 0 262 12 228 325 80 46 chr4 72090400 72090637 -112198025 + L2 LINE L2 2656 2900 -414 393 22 0 0 chr4 72091069 72091115 -112197547 + (TG)n Simple_repeat Simple_repeat 2 47 0 262 257 69 30 chr4 72091776 72091877 -112196785 - MIR SINE MIR -65 197 93 260 312 165 0 chr4 72091969 72092078 -112196584 + L2 LINE L2 3138 3264 -8 26 0 0 0 chr4 72092689 72092715 -112195947 + AT_rich Low_complexity Low_complexity 1 26 0 200 210 0 16 chr4 72092986 72093048 -112195614 + CT-rich Low_complexity Low_complexity 4 64 0 309 250 162 7 chr4 72093514 72093650 -112195012 - L1MC4a LINE L1 -1927 5881 5725 1859 86 0 13 chr4 72094739 72094972 -112193690 + MER30 DNA MER1_type 1 230 0 2211 99 24 0 chr4 72095171 72095464 -112193198 + AluSx SINE Alu 1 300 -12 1605 140 50 43 chr4 72095489 72095767 -112192895 - AluJo SINE Alu -19 293 14 23 33 0 0 chr4 72096606 72096636 -112192026 + AT_rich Low_complexity Low_complexity 1 30 0 273 197 14 0 chr4 72100376 72100447 -112188215 - L1ME4a LINE L1 0 6121 6050 448 287 87 36 chr4 72100847 72101042 -112187620 + L3b LINE CR1 1375 1579 -4 2622 186 51 2 chr4 72102138 72102691 -112185971 + L1ME2 LINE L1 5585 6164 0 307 278 196 12 chr4 72102723 72102896 -112185766 + MIR SINE MIR 58 262 0 2296 91 0 38 chr4 72103048 72103366 -112185296 - AluSc SINE Alu -3 306 1 255 286 125 36 chr4 72103853 72103965 -112184697 - L2 LINE L2 -1 3271 3150 395 254 110 83 chr4 72104223 72104451 -112184211 + MIR SINE MIR 8 241 -21 * 643 232 61 12 chr4 72104450 72104614 -112184048 - MIR SINE MIR -2 260 89 1664 167 6 48 chr4 72106596 72106908 -112181754 - AluJo SINE Alu -13 299 1 527 254 142 0 chr4 72107219 72107388 -112181274 + MIR SINE MIR 14 206 -56 297 219 202 9 chr4 72108781 72108895 -112179767 - MIR SINE MIR -99 163 28 395 264 108 18 chr4 72109070 72109237 -112179425 - MIR3 SINE MIR -11 197 16 369 256 116 70 chr4 72109831 72110003 -112178659 + MIR SINE MIR 5 184 -78 342 333 71 0 chr4 72110257 72110383 -112178279 + L2 LINE L2 3138 3272 0 2181 133 0 13 chr4 72110450 72110766 -112177896 - AluSx SINE Alu 0 312 1 375 239 31 54 chr4 72111107 72111237 -112177425 + MIR SINE MIR 86 212 -50 362 241 187 6 chr4 72111626 72111792 -112176870 - L1ME4a LINE L1 -4 6117 5922 245 305 127 0 chr4 72111952 72112070 -112176592 + MIR SINE MIR 124 256 -6 887 218 51 0 chr4 72112096 72112293 -112176369 - MIR SINE MIR -28 234 28 675 261 161 58 chr4 72113892 72114504 -112174158 - L2 LINE L2 -4 3309 2623 1964 162 3 0 chr4 72114868 72114988 -112173674 + AluJb SINE Alu 1 119 -193 261 0 0 0 chr4 72114988 72115017 -112173645 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1964 162 3 0 chr4 72115017 72115198 -112173464 + AluJb SINE Alu 119 303 -9 2357 103 37 146 chr4 72115580 72115785 -112172877 - Tigger2 DNA MER2_type 0 2718 2492 2058 103 26 0 chr4 72115785 72116093 -112172569 - AluSc SINE Alu 0 315 1 2357 103 37 146 chr4 72116093 72116373 -112172289 - Tigger2 DNA MER2_type -226 2492 1 321 148 49 0 chr4 72116376 72116437 -112172225 - L2 LINE L2 -1 3312 3249 269 222 16 16 chr4 72116995 72117058 -112171604 + MIR SINE MIR 82 144 -118 25 51 0 0 chr4 72117458 72117497 -112171165 + AT_rich Low_complexity Low_complexity 1 39 0 336 212 257 9 chr4 72118353 72118466 -112170196 - MIR SINE MIR -120 142 2 304 221 78 0 chr4 72120479 72120556 -112168106 - MIR SINE MIR -19 243 161 218 310 60 0 chr4 72120633 72120733 -112167929 + MIR SINE MIR 149 254 -8 509 325 80 5 chr4 72120852 72121052 -112167610 + MIR SINE MIR 38 252 -10 1349 167 0 0 chr4 72121156 72121360 -112167302 + AluJb SINE Alu 66 269 -43 6368 133 113 12 chr4 72122422 72123540 -112165122 - Tigger3b DNA MER2_type 0 1231 1 4073 179 63 32 chr4 72123701 72124619 -112164043 - L1MC4a LINE L1 0 7808 6862 4012 110 134 21 chr4 72126547 72127303 -112161359 - L1MCa LINE L1 -4482 1944 1104 616 45 36 126 chr4 72127305 72127416 -112161246 + L1MC1 LINE L1 6233 6333 0 252 0 0 0 chr4 72129833 72129861 -112158801 + (T)n Simple_repeat Simple_repeat 1 28 0 968 178 7 0 chr4 72130411 72130563 -112158099 + FRAM SINE Alu 1 152 -24 3211 85 22 7 chr4 72130648 72131095 -112157567 + L1PA13 LINE L1 5709 6162 -1 486 297 98 39 chr4 72131692 72132029 -112156633 + L2 LINE L2 2833 3189 -124 553 299 113 0 chr4 72132073 72132277 -112156385 + MIR SINE MIR 18 244 -18 642 230 173 16 chr4 72133034 72133282 -112155380 - L1MC4a LINE L1 -1801 6007 5721 215 226 172 0 chr4 72133738 72133831 -112154831 + L2 LINE L2 3119 3227 -86 459 143 41 0 chr4 72133880 72133978 -112154684 - L1MA5A LINE L1 -2 6295 6194 225 0 0 0 chr4 72134965 72134990 -112153672 + (A)n Simple_repeat Simple_repeat 1 25 0 709 180 7 36 chr4 72134999 72135138 -112153524 - FRAM SINE Alu -46 130 1 231 269 15 15 chr4 72135718 72135785 -112152877 + MIR SINE MIR 33 99 -163 2410 94 3 3 chr4 72136034 72136341 -112152321 + AluSg SINE Alu 1 307 -3 1502 121 0 86 chr4 72136351 72136607 -112152055 + AluSx SINE Alu 36 269 -43 2333 86 53 39 chr4 72136665 72137024 -112151638 + THE1B LTR MaLR 1 364 0 461 250 129 56 chr4 72137498 72137730 -112150932 - MIR SINE MIR 0 262 14 438 291 22 22 chr4 72138063 72138197 -112150465 - MIR SINE MIR -57 151 18 494 189 63 18 chr4 72138932 72139043 -112149619 + L1MC4 LINE L1 7924 8039 -3 336 291 29 81 chr4 72139852 72139943 -112148719 - MIR SINE MIR -61 201 107 2448 97 0 0 chr4 72139943 72140251 -112148411 + AluSx SINE Alu 1 308 -4 336 291 29 81 chr4 72140251 72140369 -112148293 - MIR SINE MIR -155 107 3 645 256 145 4 chr4 72141166 72141393 -112147269 + MIR SINE MIR 3 261 -1 256 225 14 14 chr4 72142232 72142303 -112146359 + GA-rich Low_complexity Low_complexity 2 72 0 405 250 21 0 chr4 72142521 72142617 -112146045 - L2 LINE L2 0 3272 3175 341 225 34 0 chr4 72142779 72142868 -112145794 - MER103 DNA DNA -68 98 7 961 163 6 0 chr4 72142956 72143116 -112145546 - FRAM SINE Alu -4 162 2 558 259 201 40 chr4 72143259 72143593 -112145069 - L2 LINE L2 -138 3175 2789 2460 83 0 0 chr4 72144000 72144301 -112144361 + AluSx SINE Alu 1 301 -11 180 0 0 0 chr4 72144301 72144321 -112144341 + (TA)n Simple_repeat Simple_repeat 2 21 0 231 281 18 53 chr4 72144679 72144793 -112143869 + 7SK RNA RNA 34 143 -50 5704 130 13 20 chr4 72145184 72146102 -112142560 - L1MC1 LINE L1 -16 6317 5406 239 88 0 0 chr4 72146103 72146137 -112142525 - MER4E LTR ERV1 -83 683 650 477 119 164 57 chr4 72146141 72146300 -112142362 - L1MC1 LINE L1 -907 5437 5262 277 250 11 33 chr4 72150824 72150916 -112137746 - MIR SINE MIR -24 238 149 224 395 37 15 chr4 72151306 72151440 -112137222 - L2 LINE L2 -2 3270 3134 579 294 97 21 chr4 72154049 72154123 -112134539 - MIR SINE MIR -3 259 192 2001 148 0 0 chr4 72154123 72154427 -112134235 + AluSx SINE Alu 1 304 0 579 294 97 21 chr4 72154427 72154589 -112134073 - MIR SINE MIR -70 192 4 2147 124 57 6 chr4 72154703 72155034 -112133628 + MER7A DNA MER2_type 1 346 0 2186 84 0 7 chr4 72155206 72155539 -112133123 - AluY SINE Alu 0 331 1 191 340 128 0 chr4 72156283 72156377 -112132285 + MIR SINE MIR 20 125 -137 206 283 0 0 chr4 72156461 72156507 -112132155 + MIR SINE MIR 201 246 -16 216 0 0 0 chr4 72157236 72157260 -112131402 + (T)n Simple_repeat Simple_repeat 1 24 0 1013 8 0 16 chr4 72157656 72157777 -112130885 - L1PA4 LINE L1 0 6155 6037 248 93 0 0 chr4 72158710 72158753 -112129909 + L1MB2 LINE L1 5290 5332 -814 2416 111 8 6 chr4 72158756 72159107 -112129555 + L1PA15 LINE L1 5814 6165 0 4624 126 64 20 chr4 72160068 72160879 -112127783 + L1MB2 LINE L1 5318 6164 -7 235 274 12 24 chr4 72164771 72164855 -112123807 + CT-rich Low_complexity Low_complexity 2 84 0 567 278 28 37 chr4 72165568 72165784 -112122878 - MIR SINE MIR -1 261 48 217 244 33 67 chr4 72166516 72166606 -112122056 - MIR3 SINE MIR -35 173 87 * 238 265 0 29 chr4 72166603 72166671 -112121991 - L2 LINE L2 -2 3270 3205 21 0 0 0 chr4 72166882 72166903 -112121759 + AT_rich Low_complexity Low_complexity 1 21 0 1170 174 27 0 chr4 72169458 72169677 -112118985 - L1PA16 LINE L1 -2 6164 5940 188 341 85 12 chr4 72169930 72170012 -112118650 - MIR SINE MIR -148 114 27 248 170 0 0 chr4 72170297 72170344 -112118318 + L2 LINE L2 3262 3308 -5 465 171 122 0 chr4 72170435 72170517 -112118145 + 5S rRNA rRNA 1 92 -29 378 345 70 53 chr4 72171100 72171457 -112117205 - L2 LINE L2 -13 3259 2897 2177 122 0 10 chr4 72171532 72171844 -112116818 + AluSx SINE Alu 1 309 -3 1094 158 0 0 chr4 72171844 72172009 -112116653 + AluJb SINE Alu 134 298 -14 23 54 0 0 chr4 72172436 72172473 -112116189 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr4 72172523 72172544 -112116118 + AT_rich Low_complexity Low_complexity 1 21 0 2118 221 111 21 chr4 72172891 72173660 -112115002 - L1MDb LINE L1 -4471 1935 1104 1495 161 8 12 chr4 72173664 72173906 -112114756 + AluJb SINE Alu 3 243 -69 831 220 64 5 chr4 72174471 72174689 -112113973 + MIR SINE MIR 32 262 0 2406 75 7 3 chr4 72175825 72176130 -112112532 + AluSq SINE Alu 1 306 -7 2102 110 3 14 chr4 72176952 72177242 -112111420 - AluSx SINE Alu -25 287 1 180 200 0 0 chr4 72177640 72177680 -112110982 + (TG)n Simple_repeat Simple_repeat 2 41 0 378 317 37 12 chr4 72178140 72178301 -112110361 + MIR SINE MIR 98 262 0 326 250 33 83 chr4 72178313 72178433 -112110229 + MIR SINE MIR 79 192 -70 1946 105 0 4 chr4 72178469 72178716 -112109946 + AluSq SINE Alu 1 246 -67 2050 91 40 44 chr4 72179558 72179854 -112108808 + AluSx SINE Alu 1 295 -17 226 259 106 0 chr4 72180153 72180238 -112108424 - MIR SINE MIR -13 249 156 321 294 22 0 chr4 72180334 72180426 -112108236 - L2 LINE L2 -14 3299 3206 2357 109 0 0 chr4 72180567 72180879 -112107783 - AluSx SINE Alu 0 312 1 344 372 104 26 chr4 72181148 72181495 -112107167 - L2 LINE L2 -1 3271 2898 2282 94 10 0 chr4 72181570 72181867 -112106795 + AluSg SINE Alu 1 300 -10 929 238 168 53 chr4 72181888 72182341 -112106321 - LTR33 LTR ERVL -16 505 1 24 0 0 0 chr4 72183063 72183087 -112105575 + AT_rich Low_complexity Low_complexity 1 24 0 182 80 0 0 chr4 72183185 72183210 -112105452 + (T)n Simple_repeat Simple_repeat 1 25 0 2726 89 3 3 chr4 72183436 72183796 -112104866 - L1PB1 LINE L1 0 6151 5792 198 0 0 0 chr4 72183797 72183819 -112104843 + (TG)n Simple_repeat Simple_repeat 2 23 0 2509 79 39 14 chr4 72183819 72184174 -112104488 + L1P5 LINE L1 5429 5792 -359 453 203 16 8 chr4 72184194 72184317 -112104345 + (CATATA)n Simple_repeat Simple_repeat 3 126 0 5344 162 31 77 chr4 72184317 72186212 -112102450 - L1PB1 LINE L1 -360 5791 4012 28 0 0 0 chr4 72186245 72186273 -112102389 + AT_rich Low_complexity Low_complexity 1 28 0 1078 180 27 0 chr4 72186483 72186666 -112101996 - MER5A DNA MER1_type -1 188 1 2200 117 3 3 chr4 72186698 72186997 -112101665 - AluSx SINE Alu -13 299 1 1854 139 10 17 chr4 72189602 72189903 -112098759 - AluJo SINE Alu -13 299 1 301 239 214 38 chr4 72191432 72191591 -112097071 + MER5A DNA MER1_type 2 188 -1 30 69 0 0 chr4 72191656 72191714 -112096948 + AT_rich Low_complexity Low_complexity 1 58 0 334 267 69 15 chr4 72192904 72193035 -112095627 - LTR41 LTR ERVL -635 138 1 1786 119 0 16 chr4 72193462 72193714 -112094948 - AluJo SINE Alu -62 250 3 24 0 0 0 chr4 72193765 72193789 -112094873 + AT_rich Low_complexity Low_complexity 1 24 0 193 293 160 13 chr4 72193800 72193950 -112094712 + L3b LINE CR1 1244 1415 -168 205 83 0 28 chr4 72194190 72194226 -112094436 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1773 137 0 8 chr4 72194239 72194530 -112094132 + AluSx SINE Alu 21 309 0 8591 163 45 52 chr4 72194862 72196108 -112092554 + L1MA5 LINE L1 5 1237 -5931 1152 140 112 47 chr4 72196108 72196322 -112092340 + MER30 DNA MER1_type 2 229 -1 8591 163 45 52 chr4 72196322 72196782 -112091880 + L1MA5 LINE L1 1237 1699 -5469 * 10671 168 26 23 chr4 72196750 72197132 -112091530 + L1MA5 LINE L1 3545 3924 -3243 1687 188 6 22 chr4 72197132 72197446 -112091216 + AluJo SINE Alu 1 309 -3 10671 168 26 23 chr4 72197446 72198036 -112090626 + L1MA5 LINE L1 3924 4511 -2656 2428 65 0 19 chr4 72198036 72198346 -112090316 + AluY SINE Alu 1 304 -7 10671 168 26 23 chr4 72198346 72198522 -112090140 + L1MA5 LINE L1 4511 4685 -2482 345 24 0 0 chr4 72198522 72198564 -112090098 + (CA)n Simple_repeat Simple_repeat 2 43 0 10671 168 26 23 chr4 72198564 72199545 -112089117 + L1MA5 LINE L1 4685 5682 -1485 3867 125 17 14 chr4 72199544 72200182 -112088480 + L1MA5 LINE L1 6335 6974 -347 * 336 208 89 10 chr4 72200181 72200282 -112088380 + L1ME2 LINE L1 1034 1142 -5063 * 1960 246 95 27 chr4 72200344 72200392 -112088270 + L1ME2 LINE L1 2085 2128 -4087 2089 123 6 31 chr4 72200392 72200710 -112087952 + AluSx SINE Alu 1 310 -2 1960 246 95 27 chr4 72200710 72201210 -112087452 + L1ME2 LINE L1 2128 2592 -3623 1099 88 0 27 chr4 72201210 72201358 -112087304 + L1PA8 LINE L1 6022 6165 -7 1960 246 95 27 chr4 72201358 72201788 -112086874 + L1ME2 LINE L1 2592 3097 -3118 1097 173 0 56 chr4 72201886 72202083 -112086579 + AluJo SINE Alu 1 186 -126 2004 257 133 24 chr4 72202121 72202776 -112085886 + L1ME2 LINE L1 3155 3737 -2478 2098 145 0 0 chr4 72202776 72203073 -112085589 + AluSx SINE Alu 1 297 -15 2004 257 133 24 chr4 72203073 72203598 -112085064 + L1ME2 LINE L1 3737 5066 -1149 1414 176 54 0 chr4 72203599 72203877 -112084785 - MER39 LTR ERV1 -22 685 393 242 226 43 65 chr4 72203950 72204043 -112084619 - MER39B LTR ERV1 -562 91 1 610 236 87 5 chr4 72204044 72204239 -112084423 + L1ME2 LINE L1 5068 5278 -937 3210 204 49 14 chr4 72204267 72205004 -112083658 + L1ME2 LINE L1 5461 6223 -10 49 52 0 0 chr4 72205215 72205292 -112083370 + AT_rich Low_complexity Low_complexity 1 77 0 228 237 17 0 chr4 72205292 72205351 -112083311 + L1ME2 LINE L1 6155 6214 -19 2204 75 41 0 chr4 72205499 72205793 -112082869 - AluY SINE Alu -5 306 1 1884 168 0 0 chr4 72206331 72206629 -112082033 - AluJo SINE Alu -14 298 1 238 311 194 10 chr4 72206725 72206828 -112081834 - L2 LINE L2 0 3272 3151 573 229 25 0 chr4 72207076 72207194 -112081468 - MER94 DNA DNA -11 123 3 1675 210 38 14 chr4 72207663 72208029 -112080633 - MER57B LTR ERV1 -59 375 1 210 71 0 0 chr4 72208514 72208542 -112080120 + (GGAA)n Simple_repeat Simple_repeat 3 30 0 4972 156 45 7 chr4 72208542 72209486 -112079176 + L1 LINE L1 4147 5125 -1021 249 278 122 0 chr4 72209684 72209774 -112078888 + MIR SINE MIR 113 213 -49 285 261 0 0 chr4 72209847 72209916 -112078746 - L2 LINE L2 -36 3277 3209 23 0 0 0 chr4 72209938 72209961 -112078701 + AT_rich Low_complexity Low_complexity 1 23 0 295 209 55 33 chr4 72213799 72213890 -112074772 + L1MC5 LINE L1 7837 7929 -32 1860 137 7 37 chr4 72213956 72214256 -112074406 + AluSx SINE Alu 1 291 -21 1298 181 153 8 chr4 72214409 72214658 -112074004 - AluJo SINE Alu -16 286 2 27 73 0 0 chr4 72214669 72214724 -112073938 + AT_rich Low_complexity Low_complexity 1 55 0 251 373 55 74 chr4 72214825 72215042 -112073620 - L2 LINE L2 -161 3111 2899 1596 209 69 3 chr4 72215132 72215467 -112073195 + MLT1A1 LTR MaLR 9 365 0 2151 107 56 56 chr4 72215468 72215843 -112072819 - THE1C LTR MaLR 0 375 1 316 240 27 0 chr4 72215870 72215945 -112072717 + MER5A DNA MER1_type 91 167 -22 * 442 216 21 10 chr4 72215881 72215978 -112072684 - MER5A DNA MER1_type -91 98 1 377 225 47 78 chr4 72216142 72216271 -112072391 + MER91B DNA MER1_type 5 129 -61 288 188 0 0 chr4 72216289 72216337 -112072325 + MER91B DNA MER1_type 90 137 -53 1572 215 10 6 chr4 72216624 72216935 -112071727 - AluJo SINE Alu 0 312 1 233 269 15 15 chr4 72216945 72217012 -112071650 - MLT1L LTR MaLR -328 287 221 * 278 267 67 0 chr4 72216988 72217063 -112071599 - MLT1J LTR MaLR -331 180 101 2292 138 109 3 chr4 72217203 72217588 -112071074 - MSTB LTR MaLR 0 426 1 236 282 14 14 chr4 72217680 72217751 -112070911 - L2 LINE L2 0 3272 3202 2218 110 7 3 chr4 72217893 72218202 -112070460 - AluSx SINE Alu -2 310 1 1225 226 59 81 chr4 72218248 72218791 -112069871 - MLT1H LTR MaLR 0 549 19 1923 158 24 0 chr4 72218938 72219235 -112069427 + AluJb SINE Alu 1 304 -8 257 188 50 50 chr4 72219265 72219345 -112069317 + MER112 DNA MER1_type 1 80 -180 1963 123 17 30 chr4 72219370 72219671 -112068991 + AluSx SINE Alu 1 297 -15 400 185 15 0 chr4 72219675 72219740 -112068922 + MER112 DNA MER1_type 188 253 -7 225 281 18 0 chr4 72219999 72220056 -112068606 - L2 LINE L2 -559 2755 2698 1640 157 16 51 chr4 72221169 72221481 -112067181 + AluJb SINE Alu 1 301 -11 370 286 50 37 chr4 72221522 72221683 -112066979 + MIR SINE MIR 2 164 -98 1886 133 4 0 chr4 72221722 72222000 -112066662 - AluSx SINE Alu 0 312 34 608 132 132 26 chr4 72222193 72222307 -112066355 - FLAM_C SINE Alu -5 138 13 6694 132 15 8 chr4 72222333 72223446 -112065216 - L1MA3 LINE L1 0 6305 5184 1071 193 138 44 chr4 72223546 72223881 -112064781 - L1MEc LINE L1 -3455 2760 2379 2287 108 3 0 chr4 72223881 72224178 -112064484 - AluSq SINE Alu -15 298 1 1071 193 138 44 chr4 72224178 72224247 -112064415 - L1MEc LINE L1 -3836 2379 2318 303 119 45 0 chr4 72224257 72224324 -112064338 + CT-rich Low_complexity Low_complexity 1 70 0 1286 146 0 75 chr4 72224324 72224564 -112064098 - AluJb SINE Alu -66 246 25 1103 201 102 51 chr4 72224572 72224759 -112063903 - L1MEc LINE L1 -4027 2369 2193 2386 98 0 0 chr4 72224759 72225064 -112063598 - AluSc SINE Alu -4 305 1 1103 201 102 51 chr4 72225064 72225111 -112063551 - L1MEc LINE L1 -4203 2193 2150 222 62 0 0 chr4 72225111 72225143 -112063519 + (TTTTA)n Simple_repeat Simple_repeat 3 34 0 1103 201 102 51 chr4 72225143 72225168 -112063494 - L1MEc LINE L1 -4246 2150 2128 1515 201 0 11 chr4 72225168 72225446 -112063216 - AluJb SINE Alu -37 275 1 1103 201 102 51 chr4 72225446 72225656 -112063006 - L1MEc LINE L1 -4268 2128 1874 576 281 69 48 chr4 72225680 72225862 -112062800 - L1MEc LINE L1 -5426 970 793 2288 123 0 0 chr4 72225862 72226163 -112062499 - AluSx SINE Alu -11 301 1 576 281 69 48 chr4 72226163 72226186 -112062476 - L1MEc LINE L1 -5603 793 772 1970 142 37 0 chr4 72226186 72226360 -112062302 - AluSx SINE Alu -6 306 115 225 0 0 0 chr4 72226360 72226385 -112062277 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 1970 142 37 0 chr4 72226385 72226505 -112062157 - AluSx SINE Alu -197 115 1 576 281 69 48 chr4 72226505 72226559 -112062103 - L1MEc LINE L1 -5624 772 721 1510 186 83 7 chr4 72226559 72226849 -112061813 - AluJb SINE Alu 0 312 1 576 281 69 48 chr4 72226849 72226922 -112061740 - L1MEc LINE L1 -5675 721 629 606 91 0 0 chr4 72227155 72227232 -112061430 - Alu SINE Alu -12 298 222 321 130 0 0 chr4 72227232 72227278 -112061384 - AluSq SINE Alu -125 178 133 2115 106 27 0 chr4 72227279 72227450 -112061212 - AluSx SINE Alu -3 309 125 207 0 0 0 chr4 72227450 72227473 -112061189 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2115 106 27 0 chr4 72227473 72227602 -112061060 - AluSx SINE Alu -187 125 1 664 290 90 4 chr4 72227612 72227857 -112060805 - L1MEc LINE L1 -6031 365 100 456 320 64 15 chr4 72227944 72228147 -112060515 - MIR SINE MIR -14 248 36 383 206 133 30 chr4 72228195 72228360 -112060302 - L1ME4a LINE L1 -2 6119 5938 3030 110 21 9 chr4 72228367 72228802 -112059860 + MLT2A2 LTR ERVL 1 493 -22 193 173 154 19 chr4 72228811 72228863 -112059799 - MIR SINE MIR -168 94 36 572 122 8 0 chr4 72228941 72229064 -112059598 + (TA)n Simple_repeat Simple_repeat 1 124 0 313 111 0 0 chr4 72229064 72229109 -112059553 + MLT2A1 LTR ERVL 390 434 -10 8522 8 0 0 chr4 72229226 72230871 -112057791 - L1PA2 LINE L1 0 6155 4511 1508 112 90 72 chr4 72230871 72230933 -112057729 + MER44D DNA MER2_type 56 115 -2376 2461 72 0 7 chr4 72230933 72231237 -112057425 - AluSc SINE Alu -6 303 2 1508 112 90 72 chr4 72231237 72231451 -112057211 + MER44D DNA MER2_type 115 607 -2 24 32 0 0 chr4 72231522 72231553 -112057109 + AT_rich Low_complexity Low_complexity 1 31 0 201 280 27 27 chr4 72233536 72233611 -112055051 - MER5A DNA MER1_type -75 114 40 2099 142 3 6 chr4 72233634 72233945 -112054717 + AluSx SINE Alu 1 310 -2 293 304 71 42 chr4 72234163 72234331 -112054331 + L2 LINE L2 2915 3087 -185 893 282 163 24 chr4 72234583 72234994 -112053668 + MLT1K LTR MaLR 10 477 -111 26 0 0 0 chr4 72236505 72236531 -112052131 + AT_rich Low_complexity Low_complexity 1 26 0 861 174 18 60 chr4 72236531 72236698 -112051964 - FRAM SINE Alu -16 160 1 2018 127 10 13 chr4 72236705 72237005 -112051657 - AluSx SINE Alu 0 312 14 388 318 161 14 chr4 72237126 72237337 -112051325 - MIR SINE MIR 0 262 21 760 120 0 9 chr4 72238578 72238686 -112049976 - FRAM SINE Alu -37 139 33 690 240 152 5 chr4 72238773 72238977 -112049685 - MIR SINE MIR -21 241 8 1131 254 116 18 chr4 72239009 72239457 -112049205 - L1M4 LINE L1 -2735 3411 2920 2525 80 3 0 chr4 72239488 72239800 -112048862 - AluSp SINE Alu 0 313 1 484 185 0 0 chr4 72239833 72239914 -112048748 - AluS SINE Alu -11 300 220 367 104 0 0 chr4 72240014 72240062 -112048600 - L1 LINE L1 -2014 4132 4085 2918 105 20 2 chr4 72240062 72240471 -112048191 + L1PA8 LINE L1 5749 6164 -8 21 0 0 0 chr4 72240471 72240492 -112048170 + AT_rich Low_complexity Low_complexity 1 21 0 13065 163 18 43 chr4 72240492 72241324 -112047338 - L1 LINE L1 -2047 5518 4667 1175 210 0 5 chr4 72241324 72241548 -112047114 - AluJb SINE Alu -9 303 81 13065 163 18 43 chr4 72241548 72244268 -112044394 - L1 LINE L1 -2898 4667 1926 1551 187 13 20 chr4 72244268 72244568 -112044094 + AluJo SINE Alu 3 300 -12 13065 163 18 43 chr4 72244568 72245024 -112043638 - L1 LINE L1 -5639 1926 1460 228 156 0 0 chr4 72245104 72245140 -112043522 - MIR SINE MIR -113 149 115 458 346 42 36 chr4 72245966 72246301 -112042361 + L2 LINE L2 2289 2625 -689 2248 133 8 8 chr4 72246601 72246953 -112041709 - L1MB3 LINE L1 0 6183 5832 1759 176 0 31 chr4 72246957 72247275 -112041387 - AluJo SINE Alu -4 308 1 502 128 0 11 chr4 72247275 72247369 -112041293 - L1MA4A LINE L1 -259 6044 5952 826 229 143 19 chr4 72247595 72247805 -112040857 + MIR SINE MIR 15 250 -12 304 317 20 0 chr4 72247994 72248095 -112040567 - MIR SINE MIR -112 150 48 1260 254 78 29 chr4 72248361 72248810 -112039852 + MLT1J LTR MaLR 3 473 -38 2368 91 0 0 chr4 72248811 72249109 -112039553 + AluSq SINE Alu 1 298 -15 1871 172 0 3 chr4 72249627 72249929 -112038733 + AluJo SINE Alu 3 303 -9 321 89 0 0 chr4 72250275 72250320 -112038342 + (TA)n Simple_repeat Simple_repeat 2 46 0 415 282 154 18 chr4 72250617 72250837 -112037825 - MIR SINE MIR -3 259 10 211 320 107 48 chr4 72250955 72251058 -112037604 + L2 LINE L2 3139 3247 -25 1635 107 0 0 chr4 72251122 72251328 -112037334 - AluSx SINE Alu -104 208 3 643 216 48 6 chr4 72251485 72251652 -112037010 - MER104 DNA MER2_type -4 176 3 1855 177 20 9 chr4 72251652 72251993 -112036669 + L1MB7 LINE L1 5827 6174 -10 658 137 65 40 chr4 72251993 72252117 -112036545 + MER44D DNA MER2_type 9 405 -204 21 0 0 0 chr4 72252117 72252138 -112036524 + AT_rich Low_complexity Low_complexity 1 21 0 328 98 0 0 chr4 72252141 72252192 -112036470 - L1PA2 LINE L1 0 6155 6105 1054 261 45 26 chr4 72252375 72252727 -112035935 - L1ME4a LINE L1 -284 5837 5479 365 263 9 35 chr4 72253459 72253573 -112035089 + L2 LINE L2 3189 3299 -14 3258 163 11 18 chr4 72253669 72254223 -112034439 - MER44D DNA MER2_type 0 605 1 1392 217 126 31 chr4 72254437 72254857 -112033805 - MLT1C LTR MaLR -7 460 1 788 300 20 16 chr4 72255117 72255370 -112033292 + MIR SINE MIR 9 262 0 1150 202 144 0 chr4 72255539 72255979 -112032683 + Charlie1 DNA MER1_type 3 2761 0 1155 209 28 16 chr4 72256156 72256409 -112032253 + MLT1A1 LTR MaLR 1 256 -109 275 292 11 22 chr4 72256410 72256499 -112032163 - L2 LINE L2 -37 3276 3189 701 182 16 16 chr4 72256562 72256706 -112031956 + MLT1A1 LTR MaLR 258 365 0 223 306 82 20 chr4 72257248 72257346 -112031316 - MER5A DNA MER1_type -41 148 45 249 328 47 23 chr4 72257435 72257563 -112031099 - MER5B DNA MER1_type -41 137 7 1996 126 13 20 chr4 72257580 72257882 -112030780 - AluSq SINE Alu -13 300 1 2264 115 0 10 chr4 72258214 72258528 -112030134 - AluSq SINE Alu -2 311 1 507 249 71 46 chr4 72259187 72259384 -112029278 + L2 LINE L2 3112 3313 0 1896 150 7 10 chr4 72259799 72260099 -112028563 + AluSx SINE Alu 3 301 -11 431 176 153 36 chr4 72260316 72260455 -112028207 - L1MD3 LINE L1 0 8040 7883 987 181 5 70 chr4 72260456 72260671 -112027991 - AluJb SINE Alu -12 300 100 244 258 30 0 chr4 72260681 72260747 -112027915 - L1MC4 LINE L1 -137 7905 7838 611 261 117 33 chr4 72260751 72261119 -112027543 + L1M4 LINE L1 4529 4927 -1219 310 51 0 0 chr4 72261120 72261159 -112027503 + MADE1 DNA Mariner 1 39 -41 477 167 36 0 chr4 72261259 72261343 -112027319 - AluJ/FLAM SINE Alu -224 88 2 3430 181 37 41 chr4 72261344 72261988 -112026674 - L1MB7 LINE L1 -355 6327 5682 2395 85 7 0 chr4 72261988 72262295 -112026367 - AluY SINE Alu -2 309 1 3430 181 37 41 chr4 72262295 72262514 -112026148 - L1MB7 LINE L1 -1000 5682 5464 906 256 51 100 chr4 72262514 72263084 -112025578 - MER34 LTR ERV1 0 542 1 3430 181 37 41 chr4 72263084 72263276 -112025386 - L1MB7 LINE L1 -1218 5464 5273 2274 113 0 25 chr4 72263276 72263596 -112025066 - AluSx SINE Alu 0 312 1 3430 181 37 41 chr4 72263596 72263890 -112024772 - L1MB7 LINE L1 -1409 5273 4987 2526 210 67 43 chr4 72263880 72264509 -112024153 - L1MB7 LINE L1 -5873 669 26 * 196 231 0 0 chr4 72264564 72264603 -112024059 + MIR SINE MIR 92 130 -78 2162 137 0 3 chr4 72264611 72264924 -112023738 - AluSx SINE Alu 0 312 1 360 0 0 0 chr4 72264987 72265027 -112023635 + (CA)n Simple_repeat Simple_repeat 2 41 0 317 297 30 40 chr4 72265279 72265380 -112023282 - MIR SINE MIR -126 136 37 277 268 73 37 chr4 72265744 72265908 -112022754 - HAL1b LINE L1 -689 659 490 422 292 0 17 chr4 72266433 72266552 -112022110 - MIR SINE MIR -67 141 53 348 257 0 0 chr4 72266875 72266945 -112021717 + L3 LINE CR1 1507 1576 -1 215 214 0 0 chr4 72267089 72267131 -112021531 + (TG)n Simple_repeat Simple_repeat 2 43 0 2401 64 0 26 chr4 72267154 72267466 -112021196 + AluY SINE Alu 1 304 -7 313 266 32 24 chr4 72267491 72267615 -112021047 - MLT1L LTR MaLR 0 615 491 2722 141 26 5 chr4 72267701 72268120 -112020542 - MSTA LTR MaLR 0 428 1 435 263 173 13 chr4 72268123 72268279 -112020383 + LTR16B LTR ERVL 8 188 -276 872 128 13 6 chr4 72268283 72268439 -112020223 + L1MC4 LINE L1 7696 7852 -190 2079 189 15 37 chr4 72268601 72268713 -112019949 + L1MB7 LINE L1 5721 5834 -350 1798 172 13 0 chr4 72268713 72269021 -112019641 + AluJb SINE Alu 1 312 0 2079 189 15 37 chr4 72269021 72269362 -112019300 + L1MB7 LINE L1 5834 6164 -20 195 231 0 0 chr4 72269579 72269618 -112019044 + L2 LINE L2 3271 3309 -4 1948 134 7 20 chr4 72269804 72270103 -112018559 - AluJo SINE Alu -17 295 1 216 246 48 111 chr4 72270486 72270612 -112018050 - L2 LINE L2 -4 3309 3192 * 606 279 57 49 chr4 72270609 72270853 -112017809 + L2 LINE L2 3032 3277 -36 180 0 0 0 chr4 72271947 72271967 -112016695 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 302 340 35 45 chr4 72271989 72272189 -112016473 + L2 LINE L2 2742 2939 -375 2922 141 59 64 chr4 72272213 72272326 -112016336 - L1MB7 LINE L1 -23 6161 6049 1696 191 3 13 chr4 72272326 72272641 -112016021 + AluJb SINE Alu 1 312 0 2922 141 59 64 chr4 72272641 72273122 -112015540 - L1MB7 LINE L1 -135 6049 5570 304 289 170 74 chr4 72273164 72273434 -112015228 + L2 LINE L2 2973 3268 -4 3930 236 34 56 chr4 72273705 72274843 -112013819 + L1PA12 LINE L1 9 2474 -5110 603 152 18 27 chr4 72274843 72274955 -112013707 + FRAM SINE Alu 56 166 -10 3661 166 22 62 chr4 72274972 72275157 -112013505 + L1PBa LINE L1 6 197 -6666 180 0 0 0 chr4 72275157 72275177 -112013485 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 3661 166 22 62 chr4 72275177 72276498 -112012164 + L1PBa LINE L1 197 1569 -5294 1687 122 13 0 chr4 72276498 72276736 -112011926 + AluSg/x SINE Alu 69 309 -1 3661 166 22 62 chr4 72276736 72276758 -112011904 + L1PBa LINE L1 1569 1590 -5273 1953 97 27 4 chr4 72276758 72277017 -112011645 + AluY SINE Alu 30 294 -17 3661 166 22 62 chr4 72277017 72277352 -112011310 + L1PBa LINE L1 1590 2115 -4748 2080 137 33 3 chr4 72277352 72277688 -112010974 - THE1B LTR MaLR -6 358 13 6853 95 5 3 chr4 72277688 72278725 -112009937 + L1PA11 LINE L1 5136 6174 0 404 255 50 19 chr4 72278732 72278893 -112009769 + L1ME LINE L1 5612 5777 -344 2424 88 0 0 chr4 72278944 72279240 -112009422 + AluSg SINE Alu 1 296 -14 1989 165 48 6 chr4 72279337 72279671 -112008991 - MER7A DNA MER2_type 0 346 1 403 260 69 46 chr4 72280074 72280247 -112008415 - MER5A DNA MER1_type -6 183 7 2077 114 19 35 chr4 72280529 72280846 -112007816 + AluSx SINE Alu 1 312 0 1395 143 5 14 chr4 72281912 72282129 -112006533 + AluJo SINE Alu 84 298 -14 2540 144 78 122 chr4 72282192 72282659 -112006003 - L1MC3 LINE L1 0 8042 7483 858 228 0 28 chr4 72282659 72282839 -112005823 - FAM SINE Alu 0 175 1 2540 144 78 122 chr4 72282839 72283099 -112005563 - L1MC3 LINE L1 -559 7483 7213 316 327 27 0 chr4 72283099 72283209 -112005453 - MLT1F1 LTR MaLR -420 147 35 804 177 34 0 chr4 72283209 72283384 -112005278 - L1MC3 LINE L1 -688 7097 6917 917 189 6 41 chr4 72283409 72283578 -112005084 + FRAM SINE Alu 1 155 -21 2012 99 35 3 chr4 72283602 72283884 -112004778 - AluY SINE Alu -20 291 1 21 36 0 0 chr4 72283951 72283979 -112004683 + AT_rich Low_complexity Low_complexity 1 28 0 568 283 113 15 chr4 72284128 72284464 -112004198 - L1MC3 LINE L1 -1830 5978 5610 6037 113 21 21 chr4 72284770 72285132 -112003530 - L1PB1 LINE L1 -3 6148 5787 387 0 0 0 chr4 72285132 72285175 -112003487 + (TA)n Simple_repeat Simple_repeat 2 44 0 6037 113 21 21 chr4 72285175 72285888 -112002774 - L1PB1 LINE L1 -363 5788 5068 2178 158 39 53 chr4 72286089 72286642 -112002020 + MLT2A2 LTR ERVL 1 554 0 2102 174 174 44 chr4 72287302 72287731 -112000931 + MLT1F1 LTR MaLR 4 507 -60 2348 95 0 0 chr4 72287731 72288025 -112000637 - AluSg SINE Alu -16 294 1 2102 174 174 44 chr4 72288025 72288090 -112000572 + MLT1F1 LTR MaLR 507 562 -5 233 257 27 0 chr4 72288266 72288340 -112000322 + L1ME LINE L1 5532 5607 -514 28 0 0 0 chr4 72289216 72289244 -111999418 + AT_rich Low_complexity Low_complexity 1 28 0 204 289 39 0 chr4 72290624 72290676 -111997986 + L2 LINE L2 3133 3186 -86 2084 147 32 0 chr4 72291460 72291808 -111996854 + Tigger1 DNA MER2_type 1899 2257 -161 303 141 0 0 chr4 72291808 72291872 -111996790 + (T)n Simple_repeat Simple_repeat 1 64 0 6516 78 18 38 chr4 72291873 72292845 -111995817 - SVA Other Other -2 1384 433 457 249 139 6 chr4 72293012 72293185 -111995477 + MIR3 SINE MIR 4 199 -9 338 262 74 47 chr4 72293893 72294042 -111994620 + L3 LINE CR1 1420 1572 -5 570 259 184 0 chr4 72294088 72294286 -111994376 - MIR SINE MIR -11 251 22 811 257 105 37 chr4 72294997 72295333 -111993329 - MLT1I LTR MaLR -4 405 33 288 0 0 0 chr4 72295532 72295564 -111993098 + (TG)n Simple_repeat Simple_repeat 1 32 0 231 61 0 0 chr4 72295566 72295599 -111993063 + (CAGAGA)n Simple_repeat Simple_repeat 2 34 0 628 250 152 13 chr4 72295930 72296154 -111992508 + MIR SINE MIR 4 258 -4 368 287 9 0 chr4 72296591 72296699 -111991963 + L2 LINE L2 2264 2372 -942 334 207 61 0 chr4 72297432 72297514 -111991148 + HsTC2 DNA Tc2 1 87 -1811 2481 71 0 3 chr4 72297913 72298223 -111990439 - AluY SINE Alu -2 309 1 288 244 110 12 chr4 72298684 72298766 -111989896 - Charlie8 DNA MER1_type -2324 93 4 256 303 20 20 chr4 72299327 72299426 -111989236 - MIR3 SINE MIR -17 191 93 356 222 28 0 chr4 72299846 72299918 -111988744 + MER116 DNA Mariner 2 75 -5 181 324 0 40 chr4 72301393 72301467 -111987195 + L2 LINE L2 3187 3257 -15 693 284 40 0 chr4 72303427 72303628 -111985034 + MIR SINE MIR 24 232 -30 227 322 58 16 chr4 72304196 72304317 -111984345 - L2 LINE L2 -196 3076 2951 299 206 103 0 chr4 72304422 72304490 -111984172 + MIR SINE MIR 118 192 -70 1797 102 0 4 chr4 72304515 72304751 -111983911 + AluSq SINE Alu 1 235 -78 12953 106 15 33 chr4 72309317 72309742 -111978920 - Tigger1 DNA MER2_type -502 1916 1485 740 74 9 0 chr4 72309742 72309850 -111978812 + (TTCC)n Simple_repeat Simple_repeat 2 110 0 1707 164 30 0 chr4 72309851 72310119 -111978543 - AluJo SINE Alu -36 276 1 12953 106 15 33 chr4 72310119 72311066 -111977596 - Tigger1 DNA MER2_type -933 1485 522 204 40 0 0 chr4 72311066 72311091 -111977571 + (TC)n Simple_repeat Simple_repeat 1 25 0 12953 106 15 33 chr4 72311091 72311120 -111977542 - Tigger1 DNA MER2_type -1896 522 494 1553 175 25 18 chr4 72311120 72311394 -111977268 - AluJo SINE Alu -31 281 6 12953 106 15 33 chr4 72311394 72311696 -111976966 - Tigger1 DNA MER2_type -1924 494 245 2028 132 7 0 chr4 72311696 72312010 -111976652 + AluSx SINE Alu 1 316 0 12953 106 15 33 chr4 72312010 72312247 -111976415 - Tigger1 DNA MER2_type -2173 245 5 2744 32 0 3 chr4 72315186 72315496 -111973166 + AluY SINE Alu 1 309 -2 204 316 164 19 chr4 72315867 72316240 -111972422 - L2 LINE L2 -1361 1953 1527 928 269 88 33 chr4 72316290 72316713 -111971949 - MLT1J1 LTR MaLR 0 446 1 2071 126 142 16 chr4 72317745 72318125 -111970537 + MSTA LTR MaLR 1 428 0 216 213 0 21 chr4 72319334 72319381 -111969281 + GA-rich Low_complexity Low_complexity 3 48 0 758 197 38 33 chr4 72319783 72319966 -111968696 + MER74A LTR ERVL 348 531 -27 256 298 54 39 chr4 72320702 72320907 -111967755 + LTR16C LTR ERVL 283 490 -1 21 36 0 0 chr4 72321150 72321178 -111967484 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr4 72321609 72321635 -111967027 + AT_rich Low_complexity Low_complexity 1 26 0 685 195 16 0 chr4 72321635 72321758 -111966904 - AluJo SINE Alu -176 136 12 1296 77 22 0 chr4 72322206 72322387 -111966275 - L1MA3 LINE L1 0 6305 6121 2312 139 19 0 chr4 72323818 72324177 -111964485 - MER47A DNA MER2_type 0 366 1 189 132 0 0 chr4 72325168 72325206 -111963456 + (CA)n Simple_repeat Simple_repeat 2 39 0 180 194 0 0 chr4 72325724 72325755 -111962907 - MIR SINE MIR -75 187 157 765 215 47 21 chr4 72325928 72326119 -111962543 + MER3 DNA MER1_type 14 209 0 185 0 40 0 chr4 72326179 72326204 -111962458 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 3241 25 0 0 chr4 72326204 72326568 -111962094 - L1PA5 LINE L1 -16 6138 5775 442 117 81 63 chr4 72326579 72326690 -111961972 - L1MC5 LINE L1 -36 7925 7813 2310 104 0 0 chr4 72327553 72327851 -111960811 + AluSx SINE Alu 1 298 -14 26 74 0 0 chr4 72327930 72327984 -111960678 + AT_rich Low_complexity Low_complexity 1 54 0 1883 131 0 10 chr4 72328963 72329254 -111959408 + AluJb SINE Alu 1 288 -24 2028 129 0 0 chr4 72329319 72329598 -111959064 + AluSx SINE Alu 21 299 -13 787 246 128 33 chr4 72330657 72330962 -111957700 - MLT1K LTR MaLR -107 481 148 317 283 47 9 chr4 72331274 72331380 -111957282 - L2 LINE L2 -25 3288 3179 266 324 115 7 chr4 72331406 72331545 -111957117 - L2 LINE L2 -1 3312 3159 432 0 0 0 chr4 72332090 72332138 -111956524 + (CA)n Simple_repeat Simple_repeat 2 49 0 484 261 81 12 chr4 72332484 72332645 -111956017 - MIR SINE MIR 0 262 91 918 157 8 0 chr4 72332878 72333012 -111955650 + AluSq/x SINE Alu 2 136 -177 1185 58 0 0 chr4 72333012 72333149 -111955513 + AluSq/x SINE Alu 1 137 -176 1832 86 140 18 chr4 72333149 72333428 -111955234 + AluSq SINE Alu 1 313 0 1261 194 6 85 chr4 72333441 72333770 -111954892 + AluJo SINE Alu 5 307 -5 196 258 203 16 chr4 72333965 72334093 -111954569 + L2 LINE L2 2607 2758 -556 323 168 33 0 chr4 72334124 72334196 -111954466 + L1MB8 LINE L1 6059 6131 -47 333 276 145 7 chr4 72334405 72334557 -111954105 - MIR SINE MIR -88 174 2 321 234 121 28 chr4 72335175 72335464 -111953198 - L1M LINE L1 -743 5403 5086 673 243 67 10 chr4 72335933 72336151 -111952511 - MIR SINE MIR 0 262 34 359 244 0 0 chr4 72336841 72336927 -111951735 + MIR SINE MIR 50 135 -127 189 188 42 42 chr4 72336961 72337009 -111951653 + MIR SINE MIR 210 257 -5 454 271 118 14 chr4 72337553 72337697 -111950965 - MIR3 SINE MIR -11 197 39 2073 130 30 0 chr4 72337986 72338285 -111950377 + AluSx SINE Alu 5 312 0 1246 157 73 15 chr4 72338573 72338847 -111949815 - Charlie1 DNA MER1_type -129 2632 2343 270 237 0 17 chr4 72338856 72338915 -111949747 - Charlie1 DNA MER1_type -2702 59 2 239 265 78 66 chr4 72339072 72339238 -111949424 + L1ME3A LINE L1 5924 6091 -79 222 271 104 21 chr4 72339979 72340075 -111948587 - MIR3 SINE MIR -54 154 51 196 330 56 60 chr4 72340261 72340494 -111948168 - L2 LINE L2 -2418 896 665 2164 180 8 11 chr4 72340709 72341071 -111947591 + MLT1A1 LTR MaLR 1 361 -4 2692 165 14 0 chr4 72341257 72341676 -111946986 + MSTB LTR MaLR 1 425 -1 1630 278 105 49 chr4 72341926 72342343 -111946319 - L2 LINE L2 0 3313 2921 545 28 0 14 chr4 72342343 72342415 -111946247 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 1630 278 105 49 chr4 72342415 72342825 -111945837 - L2 LINE L2 -392 2921 2535 2775 123 49 10 chr4 72342825 72343233 -111945429 - MSTA LTR MaLR -4 424 1 1630 278 105 49 chr4 72343233 72343537 -111945125 - L2 LINE L2 -778 2535 2107 1783 165 29 23 chr4 72343863 72344172 -111944490 - MLT1A1 LTR MaLR 0 365 55 541 246 114 12 chr4 72344323 72344490 -111944172 + MIR3 SINE MIR 19 202 -6 641 296 43 26 chr4 72344519 72344749 -111943913 - MIR SINE MIR 0 262 29 197 385 0 0 chr4 72345019 72345097 -111943565 + L2 LINE L2 3018 3095 -177 252 156 22 0 chr4 72345116 72345161 -111943501 - L2 LINE L2 -972 2342 2297 923 262 31 8 chr4 72345271 72345527 -111943135 - MLT1C LTR MaLR 0 467 206 479 208 25 42 chr4 72345558 72345678 -111942984 - MLT1C LTR MaLR -387 118 1 253 275 25 58 chr4 72345718 72345838 -111942824 + L2 LINE L2 2966 3081 -191 360 231 58 0 chr4 72345849 72345953 -111942709 - MIR SINE MIR -21 241 132 262 329 103 28 chr4 72346488 72346701 -111941961 + L2 LINE L2 2512 2740 -574 1998 181 86 0 chr4 72346779 72347115 -111941547 - MLT1A1 LTR MaLR 0 365 1 441 217 26 26 chr4 72347144 72347259 -111941403 - Charlie7 DNA MER1_type -2213 399 285 501 294 53 20 chr4 72347260 72347505 -111941157 + Charlie7 DNA MER1_type 406 658 -1954 582 302 68 92 chr4 72347505 72347866 -111940796 - Tigger3(Golem) DNA MER2_type 0 3038 1 488 126 223 0 chr4 72347881 72347984 -111940678 - MER46B DNA MER2_type -126 110 110 355 224 46 7 chr4 72347991 72348143 -111940519 + (TA)n Simple_repeat Simple_repeat 2 159 0 23 54 0 0 chr4 72348151 72348188 -111940474 + AT_rich Low_complexity Low_complexity 1 37 0 288 77 0 0 chr4 72348205 72348244 -111940418 + (TC)n Simple_repeat Simple_repeat 2 40 0 215 227 67 13 chr4 72348320 72348470 -111940192 + (TA)n Simple_repeat Simple_repeat 1 158 0 23 33 0 0 chr4 72348511 72348541 -111940121 + AT_rich Low_complexity Low_complexity 1 30 0 2597 175 29 21 chr4 72348611 72348637 -111940025 - L1MB8 LINE L1 -141 6037 6013 2076 124 71 6 chr4 72348637 72348975 -111939687 + MER46B DNA MER2_type 2 236 0 2597 175 29 21 chr4 72348975 72349462 -111939200 - L1MB8 LINE L1 -165 6013 5520 361 302 39 40 chr4 72349709 72349904 -111938758 + MER20B DNA MER1_type 17 214 -5 1592 255 63 29 chr4 72349909 72350352 -111938310 + MLT1J LTR MaLR 47 504 -7 214 217 43 14 chr4 72350365 72350434 -111938228 - MIR SINE MIR -27 235 165 672 258 107 26 chr4 72350508 72350741 -111937921 - MIR SINE MIR -3 259 8 3032 81 72 10 chr4 72351294 72351330 -111937332 - MLT2A1 LTR ERVL 0 444 412 225 0 0 0 chr4 72351330 72351355 -111937307 + (CA)n Simple_repeat Simple_repeat 2 26 0 3032 81 72 10 chr4 72351355 72351736 -111936926 - MLT2A1 LTR ERVL -32 412 1 290 319 146 21 chr4 72351781 72351925 -111936737 - L2 LINE L2 -8 3264 3103 2162 121 3 3 chr4 72352079 72352384 -111936278 + AluSx SINE Alu 1 305 -7 934 128 109 13 chr4 72352451 72352607 -111936055 - Tigger1 DNA MER2_type 0 2418 2248 234 0 0 0 chr4 72352612 72352638 -111936024 + (TCTCCC)n Simple_repeat Simple_repeat 5 30 0 4419 56 49 64 chr4 72352644 72353301 -111935361 + SVA Other Other 50 696 -690 1999 116 0 8 chr4 72353505 72353773 -111934889 - AluSx SINE Alu -46 266 1 6323 124 57 24 chr4 72353786 72354542 -111934120 + Tigger3b DNA MER2_type 88 893 -2135 203 61 30 0 chr4 72354542 72354575 -111934087 + (CTCA)n Simple_repeat Simple_repeat 1 34 0 6323 124 57 24 chr4 72354575 72354925 -111933737 + Tigger3b DNA MER2_type 893 1230 -1 1994 220 60 119 chr4 72354977 72355760 -111932902 + MER21B LTR ERV1 16 752 -111 379 339 56 28 chr4 72357375 72357555 -111931107 + MIR3 SINE MIR 16 200 -8 349 278 98 8 chr4 72357598 72357731 -111930931 + MIR SINE MIR 11 155 -107 724 284 116 26 chr4 72357883 72358186 -111930476 + LTR16C LTR ERVL 152 481 -10 2022 136 3 13 chr4 72358605 72358907 -111929755 + AluSx SINE Alu 2 300 -12 360 312 84 19 chr4 72359402 72359568 -111929094 + L1MC3 LINE L1 5496 5681 -440 1939 139 3 10 chr4 72359568 72359885 -111928777 + AluSx SINE Alu 1 312 0 360 312 84 19 chr4 72359885 72359933 -111928729 + L1MC3 LINE L1 5681 5724 -397 193 239 14 14 chr4 72359947 72360018 -111928644 + GA-rich Low_complexity Low_complexity 2 72 0 258 323 20 0 chr4 72360028 72360127 -111928535 + L1MC3 LINE L1 5726 5826 -295 252 202 85 31 chr4 72360179 72360308 -111928354 + L1P LINE L1 5292 5427 -727 233 229 98 0 chr4 72360393 72360454 -111928208 + L1ME4a LINE L1 5560 5626 -495 1520 135 46 92 chr4 72360498 72360802 -111927860 + AluJo SINE Alu 1 290 -22 7939 150 122 62 chr4 72360872 72361542 -111927120 + L1MC3 LINE L1 5863 6491 -1294 1979 132 5 108 chr4 72361542 72361845 -111926817 + MER2 DNA MER2_type 2 260 -84 1809 142 22 54 chr4 72361845 72362162 -111926500 - AluJo SINE Alu -1 311 5 1979 132 5 108 chr4 72362162 72362237 -111926425 + MER2 DNA MER2_type 260 341 -3 7939 150 122 62 chr4 72362237 72362766 -111925896 + L1MC3 LINE L1 6491 6987 -798 233 273 15 0 chr4 72362766 72362832 -111925830 + MLT1F1 LTR MaLR 36 102 -465 7939 150 122 62 chr4 72362832 72363380 -111925282 + L1MC3 LINE L1 6987 7785 0 2195 125 0 0 chr4 72363395 72363698 -111924964 + AluSx SINE Alu 1 303 -9 988 278 93 8 chr4 72363780 72364165 -111924497 + LTR16A LTR ERVL 33 450 0 645 309 0 0 chr4 72364710 72364862 -111923800 + G-rich Low_complexity Low_complexity 1 152 0 1293 194 94 27 chr4 72365005 72365335 -111923327 + MLT1A1 LTR MaLR 1 352 -13 469 246 88 34 chr4 72365888 72366321 -111922341 + L1ME4a LINE L1 5615 6119 -2 21 0 0 0 chr4 72366419 72366440 -111922222 + AT_rich Low_complexity Low_complexity 1 21 0 204 163 0 23 chr4 72366520 72366563 -111922099 + (TA)n Simple_repeat Simple_repeat 1 42 0 246 245 31 61 chr4 72367191 72367289 -111921373 + MIR SINE MIR 65 159 -103 2589 216 24 24 chr4 72367289 72367830 -111920832 + MLT1F LTR MaLR 1 541 -1 356 107 0 0 chr4 72368500 72368556 -111920106 - AluSc SINE Alu -1 298 243 2100 70 4 11 chr4 72368656 72368927 -111919735 - AluSc SINE Alu -40 269 1 537 284 127 38 chr4 72369037 72369430 -111919232 - MLT1L LTR MaLR -19 549 163 2219 73 76 0 chr4 72370051 72370340 -111918322 + AluY SINE Alu 1 311 0 209 250 0 0 chr4 72370551 72370587 -111918075 + MIR SINE MIR 47 82 -180 689 142 0 0 chr4 72370622 72370728 -111917934 - FLAM_C SINE Alu -3 140 35 407 267 122 0 chr4 72370737 72370868 -111917794 + MIR SINE MIR 103 249 -13 2825 216 65 29 chr4 72370968 72371566 -111917096 - L1ME1 LINE L1 -1 6165 5590 1734 182 52 70 chr4 72371566 72372006 -111916656 + MSTB1 LTR MaLR 1 432 0 2825 216 65 29 chr4 72372006 72373071 -111915591 - L1ME1 LINE L1 -576 5590 4360 832 262 77 30 chr4 72373170 72373598 -111915064 + L1MC4a LINE L1 5625 6072 -1736 462 329 110 39 chr4 72373654 72373909 -111914753 + MLT1J LTR MaLR 8 280 -231 2127 129 7 7 chr4 72373961 72374263 -111914399 + AluSx SINE Alu 1 302 -10 250 254 0 17 chr4 72374368 72374427 -111914235 - MIR SINE MIR -135 73 16 21 0 0 0 chr4 72375295 72375316 -111913346 + AT_rich Low_complexity Low_complexity 1 21 0 550 236 43 0 chr4 72375881 72376021 -111912641 - L1ME1 LINE L1 -1838 4308 4163 180 0 0 0 chr4 72376159 72376179 -111912483 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2123 106 0 0 chr4 72376188 72376463 -111912199 - AluSx SINE Alu -37 275 1 951 210 19 0 chr4 72376836 72376998 -111911664 - FAM SINE Alu -10 165 1 2085 130 0 3 chr4 72377008 72377309 -111911353 - AluSx SINE Alu -12 300 1 383 171 29 67 chr4 72377727 72377832 -111910830 - MER94 DNA DNA -33 101 1 301 191 15 15 chr4 72377905 72377973 -111910689 - LTR33 LTR ERVL -44 477 410 328 275 100 38 chr4 72378011 72378171 -111910491 - LTR33 LTR ERVL -257 264 95 21 36 0 0 chr4 72378563 72378591 -111910071 + AT_rich Low_complexity Low_complexity 1 28 0 1580 116 152 0 chr4 72378851 72379101 -111909561 - AluSx SINE Alu -24 288 1 199 206 0 0 chr4 72379122 72379156 -111909506 - MIR SINE MIR -9 253 220 22 0 0 0 chr4 72381835 72381857 -111906805 + GC_rich Low_complexity Low_complexity 1 22 0 337 337 0 0 chr4 72384071 72384163 -111904499 - L3 LINE CR1 -7 1570 1479 449 193 12 12 chr4 72384278 72384361 -111904301 - L2 LINE L2 0 3313 3231 205 186 0 0 chr4 72386056 72386099 -111902563 + T-rich Low_complexity Low_complexity 5 47 0 208 258 10 113 chr4 72386420 72386517 -111902145 - L2 LINE L2 -271 3001 2915 1235 77 41 6 chr4 72387249 72387418 -111901244 - AluSg/x SINE Alu -13 299 125 664 160 194 27 chr4 72388736 72388924 -111899738 - MLT1D LTR MaLR -73 432 216 235 311 153 14 chr4 72389032 72389254 -111899408 - MLT1K LTR MaLR -123 465 213 228 328 76 0 chr4 72389379 72389498 -111899164 - L1MC4a LINE L1 -1846 5962 5835 217 265 20 0 chr4 72390907 72390956 -111897706 - L2 LINE L2 0 3272 3223 2281 97 0 7 chr4 72391716 72392015 -111896647 - AluSx SINE Alu -15 297 1 218 250 0 0 chr4 72392017 72392065 -111896597 - L2 LINE L2 -11 3261 3214 659 183 0 0 chr4 72392247 72392351 -111896311 + FLAM_C SINE Alu 26 129 -14 230 299 91 13 chr4 72393241 72393318 -111895344 + L2 LINE L2 3165 3247 -25 234 308 15 0 chr4 72393830 72393895 -111894767 + L2 LINE L2 3242 3307 -6 583 251 38 95 chr4 72394863 72395045 -111893617 + MIR SINE MIR 15 206 -56 2128 129 0 0 chr4 72395045 72395331 -111893331 + AluSx SINE Alu 1 286 -26 192 97 0 0 chr4 72395335 72395366 -111893296 + (CATA)n Simple_repeat Simple_repeat 2 32 0 583 251 38 95 chr4 72395366 72395441 -111893221 + MIR SINE MIR 209 262 0 388 340 86 19 chr4 72396820 72397088 -111891574 + MARNA DNA Mariner 274 559 -27 610 332 97 5 chr4 72399516 72399917 -111888745 - L2 LINE L2 -785 2529 2092 193 268 71 0 chr4 72400455 72400511 -111888151 - MIR SINE MIR -30 232 173 21 0 0 0 chr4 72400618 72400639 -111888023 + AT_rich Low_complexity Low_complexity 1 21 0 237 306 0 14 chr4 72401347 72401419 -111887243 - MIR3 SINE MIR -9 199 129 244 372 22 17 chr4 72401539 72401719 -111886943 + MER117 DNA MER1_type 17 197 0 209 348 93 13 chr4 72401753 72401989 -111886673 - L2 LINE L2 -337 2977 2723 185 139 23 0 chr4 72402391 72402434 -111886228 + A-rich Low_complexity Low_complexity 2 45 0 424 100 0 0 chr4 72406186 72406246 -111882416 - L1MA1 LINE L1 -9 6293 6234 227 115 58 23 chr4 72406522 72406609 -111882053 + (TA)n Simple_repeat Simple_repeat 2 91 0 365 267 0 30 chr4 72406609 72406710 -111881952 - L1MC4 LINE L1 -1331 6711 6614 748 134 75 30 chr4 72406721 72406855 -111881807 + FLAM_C SINE Alu 2 141 -2 1240 194 0 0 chr4 72406863 72407069 -111881593 - MER2 DNA MER2_type -139 206 1 1676 186 83 24 chr4 72408030 72408202 -111880460 - Charlie5 DNA MER1_type 0 2624 2464 2337 62 3 36 chr4 72408202 72408508 -111880154 + AluY SINE Alu 1 296 -15 1676 186 83 24 chr4 72408508 72408803 -111879859 - Charlie5 DNA MER1_type -160 2464 2129 905 209 27 5 chr4 72408777 72408964 -111879698 - Charlie5 DNA MER1_type -2420 192 2 * 187 323 127 45 chr4 72410113 72410333 -111878329 + MIR SINE MIR 6 243 -19 586 291 77 5 chr4 72410843 72411039 -111877623 - MIR SINE MIR -30 232 23 566 111 269 0 chr4 72411510 72411618 -111877044 - FLAM_C SINE Alu -5 138 2 406 220 178 8 chr4 72412329 72412447 -111876215 + MIR3 SINE MIR 23 160 -48 1321 168 0 5 chr4 72412479 72412688 -111875974 - MER58A DNA MER1_type -15 209 2 297 0 0 0 chr4 72413314 72413347 -111875315 + (CA)n Simple_repeat Simple_repeat 2 34 0 230 123 70 18 chr4 72413347 72413461 -111875201 + (TA)n Simple_repeat Simple_repeat 2 121 0 640 219 60 7 chr4 72414797 72414948 -111873714 + MIR SINE MIR 36 194 -68 2119 118 10 0 chr4 72415064 72415361 -111873301 - AluSx SINE Alu -12 300 1 185 81 0 27 chr4 72415778 72415815 -111872847 + (TTTTTG)n Simple_repeat Simple_repeat 3 38 0 2278 221 74 27 chr4 72415899 72416493 -111872169 + MLT1E3 LTR MaLR 3 624 0 2317 105 3 0 chr4 72416579 72416885 -111871777 + AluSg SINE Alu 1 307 -3 230 279 82 75 chr4 72418540 72418687 -111869975 + MIR3 SINE MIR 20 167 -41 259 195 272 9 chr4 72419340 72419455 -111869207 - MIR SINE MIR -58 204 63 434 340 40 0 chr4 72421131 72421281 -111867381 + L2 LINE L2 3116 3271 -1 979 172 0 32 chr4 72421352 72421538 -111867124 - AluJo SINE Alu -6 306 127 314 225 28 0 chr4 72421952 72422023 -111866639 - MIR3 SINE MIR -39 169 97 28 0 0 0 chr4 72422133 72422161 -111866501 + AT_rich Low_complexity Low_complexity 1 28 0 1652 135 40 0 chr4 72422473 72422725 -111865937 + MER7A DNA MER2_type 1 260 -86 768 143 25 0 chr4 72422725 72422844 -111865818 - LTR12 LTR ERV1 -234 480 359 385 240 10 0 chr4 72422844 72422944 -111865718 - LTR30 LTR ERV1 -98 624 524 762 120 57 133 chr4 72422944 72423188 -111865474 - LTR12 LTR ERV1 -456 1523 55 235 250 0 0 chr4 72423200 72423252 -111865410 - LTR30 LTR ERV1 -670 52 1 2085 147 31 3 chr4 72423269 72423595 -111865067 + MER1B DNA MER1_type 3 337 0 396 277 0 0 chr4 72423595 72423678 -111864984 + MER7A DNA MER2_type 264 346 0 225 236 0 83 chr4 72424172 72424244 -111864418 - MIR SINE MIR -125 83 18 588 230 43 31 chr4 72425292 72425453 -111863209 + MIR SINE MIR 30 192 -70 287 319 43 51 chr4 72425999 72426234 -111862428 - L2 LINE L2 -855 2459 2227 193 191 48 0 chr4 72427501 72427543 -111861119 - MIR3 SINE MIR -3 205 162 252 0 0 0 chr4 72427751 72427779 -111860883 + (T)n Simple_repeat Simple_repeat 1 28 0 1011 124 65 0 chr4 72427798 72427951 -111860711 + FRAM SINE Alu 1 162 -14 2369 95 3 0 chr4 72427952 72428256 -111860406 + AluSg SINE Alu 1 305 -5 23 0 0 0 chr4 72428256 72428279 -111860383 + AT_rich Low_complexity Low_complexity 1 23 0 1820 152 3 14 chr4 72479370 72479525 -111809137 - AluJb SINE Alu -25 287 135 2332 104 0 3 chr4 72479525 72479824 -111808838 - AluSx SINE Alu -14 298 1 1820 152 3 14 chr4 72479824 72479958 -111808704 - AluJb SINE Alu -177 135 1 2139 116 7 3 chr4 72480489 72480790 -111807872 - AluSx SINE Alu -10 302 1 407 159 0 11 chr4 72482248 72482336 -111806326 - MER50 LTR ERV1 -117 617 531 2309 62 7 13 chr4 72482357 72482661 -111806001 - AluY SINE Alu -9 302 1 1591 143 114 0 chr4 72483840 72484112 -111804550 + AluSx SINE Alu 1 303 -9 262 192 0 0 chr4 72485128 72485180 -111803482 - L1MA5A LINE L1 -127 6170 6119 511 120 0 0 chr4 72485438 72485513 -111803149 - L1MA5 LINE L1 -196 6104 6030 320 219 200 0 chr4 72485857 72485962 -111802700 - FLAM_C SINE Alu 0 133 8 258 32 0 0 chr4 72485980 72486011 -111802651 + (A)n Simple_repeat Simple_repeat 1 31 0 1978 121 3 7 chr4 72486084 72486395 -111802267 + AluSg SINE Alu 1 310 0 809 292 56 20 chr4 72486484 72486840 -111801822 + HAL1 LINE L1 2119 2487 -20 24 0 0 0 chr4 72486924 72486948 -111801714 + AT_rich Low_complexity Low_complexity 1 24 0 1448 187 122 0 chr4 72487323 72487585 -111801077 + AluJb SINE Alu 1 294 -8 1923 32 0 0 chr4 72487630 72487846 -111800816 - L1PA5 LINE L1 -2 6152 5937 225 194 92 41 chr4 72488043 72488141 -111800521 - L3 LINE CR1 -283 1294 1192 280 278 20 106 chr4 72488179 72488206 -111800456 - L3 LINE CR1 -577 1000 972 2224 110 3 3 chr4 72488206 72488505 -111800157 - AluSx SINE Alu -13 299 1 280 278 20 106 chr4 72488505 72488628 -111800034 - L3 LINE CR1 -605 972 863 186 43 0 0 chr4 72488659 72488682 -111799980 + (T)n Simple_repeat Simple_repeat 1 23 0 584 152 0 172 chr4 72488897 72489048 -111799614 + FLAM_C SINE Alu 1 125 -8 248 312 32 21 chr4 72489056 72489149 -111799513 + L3 LINE CR1 1464 1557 -20 2413 204 78 73 chr4 72489454 72490330 -111798332 + L1M4 LINE L1 2892 3771 -2375 731 203 31 0 chr4 72490431 72490559 -111798103 - AluJb SINE Alu -34 278 147 1509 122 9 0 chr4 72490559 72490772 -111797890 + MER41C LTR ERV1 1 215 -339 939 121 8 0 chr4 72490772 72490904 -111797758 - AluJb SINE Alu -179 133 1 6602 141 57 14 chr4 72491191 72492479 -111796183 + L1MA6 LINE L1 4186 5565 -735 2100 109 68 41 chr4 72492479 72492817 -111795845 + L1PA16 LINE L1 5808 6154 -12 6602 141 57 14 chr4 72492817 72493329 -111795333 + L1MA6 LINE L1 5565 6054 -246 1947 147 20 0 chr4 72493333 72493625 -111795037 + AluJb SINE Alu 1 298 -14 1112 171 30 34 chr4 72493660 72493894 -111794768 + L1MB8 LINE L1 5935 6167 -11 899 121 35 7 chr4 72493907 72494048 -111794614 - L1PA16 LINE L1 -1 6165 6021 2048 152 0 3 chr4 72494051 72494353 -111794309 - AluSx SINE Alu -11 301 1 556 163 76 0 chr4 72494359 72494451 -111794211 - AluJo SINE Alu -176 136 38 2386 84 7 0 chr4 72494850 72495147 -111793515 - AluY SINE Alu -12 299 1 294 360 54 38 chr4 72495153 72495414 -111793248 + L2 LINE L2 2825 3089 -183 21 0 0 0 chr4 72495447 72495468 -111793194 + AT_rich Low_complexity Low_complexity 1 21 0 1682 176 25 0 chr4 72495475 72495754 -111792908 + AluJo SINE Alu 13 298 -14 225 0 0 0 chr4 72496523 72496548 -111792114 + (A)n Simple_repeat Simple_repeat 1 25 0 2318 59 31 3 chr4 72496596 72496884 -111791778 + AluY SINE Alu 2 297 -14 2071 118 3 10 chr4 72497142 72497439 -111791223 + AluSq SINE Alu 5 299 -14 468 246 68 8 chr4 72497608 72497726 -111790936 + L2 LINE L2 3189 3313 0 357 125 0 0 chr4 72497745 72497801 -111790861 + (CA)n Simple_repeat Simple_repeat 1 56 0 2242 104 3 16 chr4 72497848 72498157 -111790505 - AluSx SINE Alu -7 305 1 1905 153 0 3 chr4 72498995 72499290 -111789372 + AluJb SINE Alu 1 294 -18 743 216 93 26 chr4 72500056 72500129 -111788533 - MER3 DNA MER1_type -1 208 141 2325 101 0 0 chr4 72500129 72500436 -111788226 + AluSg SINE Alu 1 307 -3 743 216 93 26 chr4 72500436 72500556 -111788106 - MER3 DNA MER1_type -68 141 2 235 204 20 20 chr4 72500684 72500733 -111787929 - Alu SINE Alu -16 287 239 225 235 224 0 chr4 72501393 72501478 -111787184 - MER33 DNA MER1_type -220 104 1 1888 103 61 0 chr4 72505726 72505989 -111782673 + AluSx SINE Alu 9 287 -25 1381 150 36 49 chr4 72506637 72506933 -111781729 - MER72 LTR ERV1 -440 282 15 1573 168 45 17 chr4 72507320 72507611 -111781051 - AluSx SINE Alu -13 299 1 1618 143 112 0 chr4 72507869 72508120 -111780542 + AluSx SINE Alu 1 279 -33 24 32 0 0 chr4 72509668 72509699 -111778963 + AT_rich Low_complexity Low_complexity 1 31 0 2276 99 0 3 chr4 72510455 72510747 -111777915 + AluSx SINE Alu 2 292 -20 1809 171 60 17 chr4 72511004 72511354 -111777308 + MLT1A1 LTR MaLR 1 365 0 1772 164 3 23 chr4 72511555 72511860 -111776802 - AluJo SINE Alu -9 303 5 268 338 99 7 chr4 72512165 72512307 -111776355 - MLT1J LTR MaLR -129 382 228 239 192 0 0 chr4 72512309 72512351 -111776311 - MLT1J LTR MaLR -284 199 125 1827 156 6 32 chr4 72512351 72512666 -111775996 - AluJb SINE Alu -5 307 1 2096 147 0 0 chr4 72512778 72513078 -111775584 - AluSx SINE Alu -12 300 1 23 24 0 24 chr4 72513105 72513124 -111775538 + AT_rich Low_complexity Low_complexity 1 19 -21 1878 140 0 17 chr4 72513124 72513416 -111775246 + AluJb SINE Alu 1 287 -25 23 24 0 24 chr4 72513416 72513437 -111775225 + AT_rich Low_complexity Low_complexity 19 40 0 1976 149 13 0 chr4 72514631 72514939 -111773723 - AluSx SINE Alu 0 312 1 1844 126 65 0 chr4 72514946 72515224 -111773438 - AluSx SINE Alu -12 300 5 428 197 106 15 chr4 72515633 72515765 -111772897 - MER69 DNA AcHobo 0 2526 2383 338 298 146 13 chr4 72515779 72515937 -111772725 - MER5A DNA MER1_type -3 186 8 2406 94 0 0 chr4 72516414 72516711 -111771951 - AluSq SINE Alu -10 303 7 324 0 0 0 chr4 72516785 72516821 -111771841 + (TA)n Simple_repeat Simple_repeat 2 37 0 315 157 79 22 chr4 72516823 72516912 -111771750 - LTR54B LTR ERV1 -12 486 393 2259 105 0 13 chr4 72518852 72519157 -111769505 - AluSq SINE Alu -12 301 1 316 203 0 0 chr4 72521740 72521804 -111766858 + L1MD3 LINE L1 7053 7116 -879 253 265 10 51 chr4 72521804 72521902 -111766760 + MLT1F1 LTR MaLR 38 131 -436 2484 198 32 42 chr4 72521902 72521934 -111766728 + L1MD3 LINE L1 7409 7440 -555 2382 68 0 0 chr4 72521934 72522226 -111766436 + AluY SINE Alu 1 292 -19 2484 198 32 42 chr4 72522226 72522785 -111765877 + L1MD3 LINE L1 7440 7994 -1 2027 115 16 22 chr4 72523284 72523598 -111765064 + AluSq SINE Alu 1 312 -1 844 252 22 31 chr4 72523641 72523863 -111764799 + MIR SINE MIR 11 230 -32 663 270 99 5 chr4 72523875 72524086 -111764576 - MIR SINE MIR -28 234 4 2217 128 0 0 chr4 72524675 72524979 -111763683 + AluSx SINE Alu 1 304 -8 690 269 70 40 chr4 72524992 72525219 -111763443 - MIR SINE MIR -24 238 5 293 318 164 5 chr4 72526077 72526291 -111762371 + L2 LINE L2 2538 2785 -529 1770 181 0 25 chr4 72526517 72526831 -111761831 - AluJo SINE Alu -6 306 1 1967 154 0 0 chr4 72526946 72527244 -111761418 - AluSx SINE Alu -14 298 1 925 172 49 70 chr4 72527244 72527353 -111761309 - Charlie1a DNA MER1_type -2479 282 172 907 114 0 50 chr4 72527353 72527493 -111761169 - FLAM_C SINE Alu 0 133 1 925 172 49 70 chr4 72527493 72527627 -111761035 - Charlie1a DNA MER1_type -2589 172 44 627 227 0 23 chr4 72528252 72528380 -111760282 + FLAM_C SINE Alu 1 125 -8 503 170 0 64 chr4 72528582 72528676 -111759986 + AluJ/FLAM SINE Alu 2 89 -223 708 138 0 0 chr4 72528678 72528794 -111759868 + (CATATA)n Simple_repeat Simple_repeat 2 117 0 979 155 71 0 chr4 72528797 72528952 -111759710 + FRAM SINE Alu 1 166 0 211 330 113 28 chr4 72529979 72530085 -111758577 - L3b LINE CR1 -52 1531 1417 183 156 0 0 chr4 72530085 72530117 -111758545 + (CAGG)n Simple_repeat Simple_repeat 3 34 0 706 211 125 43 chr4 72531137 72531369 -111757293 + MIR SINE MIR 12 262 0 1939 111 0 0 chr4 72531814 72532091 -111756571 - AluSx SINE Alu 0 305 29 6915 132 31 20 chr4 72532323 72533539 -111755123 + L1MA2 LINE L1 4119 5320 -984 2291 109 0 0 chr4 72533539 72533842 -111754820 + AluSc SINE Alu 1 303 -6 6915 132 31 20 chr4 72533842 72534541 -111754121 + L1MA2 LINE L1 5320 6074 -230 2443 71 0 0 chr4 72534541 72534836 -111753826 + AluY SINE Alu 1 295 -16 6915 132 31 20 chr4 72534836 72535070 -111753592 + L1MA2 LINE L1 6074 6304 0 275 282 14 0 chr4 72535167 72535238 -111753424 + LTR1 LTR ERV1 28 99 -686 291 183 42 14 chr4 72535246 72535317 -111753345 + LTR1B LTR ERV1 30 102 -724 1085 219 109 96 chr4 72535330 72535882 -111752780 + LTR1B LTR ERV1 33 591 -235 516 269 212 29 chr4 72536057 72536443 -111752219 - LTR16A1 LTR ERVL 0 457 1 227 349 47 12 chr4 72536468 72536554 -111752108 + L2 LINE L2 3206 3294 -19 2222 102 26 0 chr4 72536954 72537257 -111751405 + AluSx SINE Alu 1 311 -1 507 196 0 10 chr4 72537288 72537385 -111751277 - AluJb SINE Alu -84 228 133 1552 120 9 0 chr4 72537400 72537616 -111751046 + AluSx SINE Alu 1 218 -94 2299 104 0 3 chr4 72538544 72538853 -111749809 + AluSg SINE Alu 1 308 -2 4007 177 26 37 chr4 72538943 72539401 -111749261 + L1MA9 LINE L1 5483 5929 -383 4130 109 8 80 chr4 72539401 72540116 -111748546 - MER4A LTR ERV1 0 664 1 4007 177 26 37 chr4 72540116 72540489 -111748173 + L1MA9 LINE L1 5929 6305 -7 816 142 0 0 chr4 72540546 72540666 -111747996 + MER4A LTR ERV1 458 577 -87 3116 161 43 83 chr4 72540710 72541430 -111747232 - LTR8 LTR ERV1 0 691 1 502 270 113 27 chr4 72541619 72541804 -111746858 + LTR1 LTR ERV1 28 228 -557 633 212 27 133 chr4 72541891 72542252 -111746410 + LTR1B LTR ERV1 346 1020 0 527 242 51 35 chr4 72542363 72542553 -111746109 + MLT1J2 LTR MaLR 1 191 -218 1486 126 14 0 chr4 72542847 72543054 -111745608 + AluSx SINE Alu 1 210 -102 451 103 0 126 chr4 72543726 72543813 -111744849 - MLT1A2 LTR MaLR -298 76 1 2085 127 0 0 chr4 72543853 72544166 -111744496 + AluSx SINE Alu 1 313 0 532 251 75 81 chr4 72544172 72544565 -111744097 + L1MEd LINE L1 1003 1434 -4876 1803 160 3 24 chr4 72544565 72544853 -111743809 + AluJb SINE Alu 1 282 -30 532 251 75 81 chr4 72544853 72545002 -111743660 + L1MEd LINE L1 1434 1582 -4728 2330 103 20 0 chr4 72545005 72545306 -111743356 + AluSx SINE Alu 1 307 -5 237 247 0 61 chr4 72545732 72545842 -111742820 + L1MEd LINE L1 2114 2217 -3912 1356 271 67 32 chr4 72545856 72546283 -111742379 + LTR33 LTR ERVL 38 449 -72 2440 110 8 11 chr4 72546283 72546639 -111742023 + THE1A LTR MaLR 1 355 0 1356 271 67 32 chr4 72546639 72546670 -111741992 + LTR33 LTR ERVL 444 513 -3 2290 110 3 13 chr4 72546670 72546979 -111741683 - AluSq SINE Alu -7 306 1 442 234 86 17 chr4 72546991 72547166 -111741496 + L1MEd LINE L1 2215 2401 -3728 28 61 0 0 chr4 72547547 72547596 -111741066 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr4 72547667 72547689 -111740973 + AT_rich Low_complexity Low_complexity 1 22 0 273 244 49 0 chr4 72547690 72547772 -111740890 + L1ME LINE L1 5607 5692 -429 360 0 0 0 chr4 72548026 72548066 -111740596 + (TG)n Simple_repeat Simple_repeat 2 41 0 198 0 0 0 chr4 72548088 72548110 -111740552 + (TG)n Simple_repeat Simple_repeat 2 23 0 270 0 0 0 chr4 72548130 72548160 -111740502 + (TG)n Simple_repeat Simple_repeat 2 31 0 1651 153 183 19 chr4 72548171 72548537 -111740125 + MSTA LTR MaLR 1 426 -2 2147 146 39 0 chr4 72548654 72548989 -111739673 + MER7A DNA MER2_type 1 346 0 399 192 15 0 chr4 72548998 72549144 -111739518 - L1MC4 LINE L1 -1056 6729 6415 1069 148 0 0 chr4 72550233 72550395 -111738267 + FRAM SINE Alu 4 165 -11 2078 97 0 58 chr4 72552134 72552442 -111736220 - AluSx SINE Alu -22 290 1 662 294 47 21 chr4 72552781 72553016 -111735646 - LTR33 LTR ERVL -250 271 31 732 151 56 8 chr4 72553163 72553289 -111735373 + AluJ SINE Alu 5 136 -176 2360 83 0 20 chr4 72553295 72553597 -111735065 + AluY SINE Alu 1 296 -15 29 84 0 0 chr4 72553597 72553668 -111734994 + AT_rich Low_complexity Low_complexity 1 71 0 699 182 128 0 chr4 72553676 72553851 -111734811 + AluJ SINE Alu 117 310 0 1285 133 0 0 chr4 72553870 72554051 -111734611 - AluSg/x SINE Alu -14 296 116 1480 166 12 75 chr4 72554213 72554544 -111734118 + AluJo SINE Alu 1 310 -2 385 251 116 42 chr4 72554551 72554766 -111733896 + L1MC4 LINE L1 7640 7870 -172 242 259 25 12 chr4 72555777 72555858 -111732804 - MIR SINE MIR -17 245 164 403 234 158 6 chr4 72556399 72556557 -111732105 + MIR SINE MIR 78 259 -3 207 0 0 0 chr4 72557322 72557345 -111731317 + (CCCCCG)n Simple_repeat Simple_repeat 3 25 0 246 62 0 0 chr4 72557348 72557380 -111731282 + (TCC)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr4 72557516 72557538 -111731124 + GC_rich Low_complexity Low_complexity 1 22 0 200 35 35 0 chr4 72557760 72557789 -111730873 + (GAAAA)n Simple_repeat Simple_repeat 5 34 0 228 146 24 0 chr4 72557847 72557888 -111730774 + G-rich Low_complexity Low_complexity 1 42 0 266 191 0 0 chr4 72558950 72558992 -111729670 - L2 LINE L2 -80 3192 3151 283 219 61 35 chr4 72559016 72559130 -111729532 + L2 LINE L2 3133 3249 -64 297 289 275 0 chr4 72559246 72559388 -111729274 - L2 LINE L2 -259 3054 2874 808 176 47 12 chr4 72559675 72559845 -111728817 + L1MB8 LINE L1 5628 5803 -381 562 168 21 0 chr4 72559902 72559997 -111728665 - AluJ/FLAM SINE Alu -210 102 6 1312 179 20 12 chr4 72559998 72560249 -111728413 + L1MB8 LINE L1 5785 6037 -141 1073 154 5 37 chr4 72560258 72560446 -111728216 - AluJb SINE Alu -2 310 129 735 138 53 26 chr4 72560450 72560520 -111728142 + L1MB7 LINE L1 6029 6096 -88 1014 151 124 46 chr4 72560520 72560738 -111727924 - MER46A DNA MER2_type -1 235 1 735 138 53 26 chr4 72560738 72560819 -111727843 + L1MB7 LINE L1 6096 6184 0 1823 181 16 0 chr4 72561128 72561431 -111727231 - AluJb SINE Alu -4 308 1 2155 113 14 3 chr4 72561486 72561779 -111726883 - AluSx SINE Alu -16 296 1 613 205 55 0 chr4 72561969 72562096 -111726566 + FLAM_C SINE Alu 6 139 -4 656 265 67 36 chr4 72562097 72562350 -111726312 - MIR SINE MIR 0 262 2 2127 126 0 3 chr4 72562631 72562925 -111725737 + AluSx SINE Alu 4 296 -16 2574 74 3 0 chr4 72563814 72564124 -111724538 - AluSp SINE Alu -2 311 1 1299 124 50 70 chr4 72565573 72565831 -111722831 - MER4E LTR ERV1 -10 769 517 1826 129 27 34 chr4 72565865 72566160 -111722502 - AluSg SINE Alu -11 299 7 2643 177 46 34 chr4 72566164 72566690 -111721972 - MER4E LTR ERV1 -247 532 1 2133 131 78 125 chr4 72566776 72567084 -111721578 - LTR54 LTR ERV1 0 510 236 541 222 8 24 chr4 72567084 72567210 -111721452 + FLAM_A SINE Alu 4 127 -6 2133 131 78 125 chr4 72567210 72567436 -111721226 - LTR54 LTR ERV1 -274 236 1 1786 138 7 34 chr4 72567642 72567959 -111720703 + AluJb SINE Alu 1 309 0 7661 22 0 0 chr4 72568007 72569155 -111719507 - L1PA4 LINE L1 -6 6149 4997 7113 28 0 0 chr4 72569156 72569984 -111718678 + L1PA4 LINE L1 4176 5003 -1143 227 163 0 23 chr4 72570126 72570169 -111718493 + MIR SINE MIR 71 112 -150 1685 146 90 0 chr4 72570177 72570445 -111718217 - AluJb SINE Alu 0 312 21 459 250 43 0 chr4 72570505 72570621 -111718041 + MIR SINE MIR 123 243 -19 777 147 91 14 chr4 72570675 72570818 -111717844 - MLT1F1 LTR MaLR -1 566 413 * 4250 131 37 27 chr4 72570814 72570955 -111717707 - MER50 LTR ERV1 -23 711 573 2175 79 13 63 chr4 72570955 72571270 -111717392 + AluSp SINE Alu 1 299 -14 4250 131 37 27 chr4 72571270 72571832 -111716830 - MER50 LTR ERV1 -161 573 1 592 198 119 46 chr4 72571844 72572147 -111716515 - MLT1F1 LTR MaLR -154 439 1 547 148 11 0 chr4 72572330 72572418 -111716244 - AluJo SINE Alu -26 286 198 777 164 60 0 chr4 72572422 72572556 -111716106 - AluJo SINE Alu -169 143 2 1873 112 22 0 chr4 72572575 72572843 -111715819 - AluSq SINE Alu -4 309 36 196 353 24 0 chr4 72572844 72572929 -111715733 - MIR SINE MIR -157 105 19 1559 188 54 68 chr4 72572936 72572992 -111715670 - MLT2D LTR ERVL -7 407 352 492 32 0 0 chr4 72572992 72573054 -111715608 + (GA)n Simple_repeat Simple_repeat 1 62 0 1559 188 54 68 chr4 72573054 72573407 -111715255 - MLT2D LTR ERVL -62 352 4 1389 138 89 32 chr4 72573737 72573984 -111714678 - AluJo SINE Alu -16 296 36 203 214 57 43 chr4 72574087 72574157 -111714505 + L2 LINE L2 3242 3312 -1 1704 224 63 49 chr4 72574189 72574680 -111713982 - LTR33 LTR ERVL -23 498 1 21 0 0 0 chr4 72574807 72574828 -111713834 + AT_rich Low_complexity Low_complexity 1 21 0 2538 76 0 0 chr4 72574830 72575134 -111713528 + AluSc SINE Alu 1 304 -5 213 331 46 31 chr4 72575520 72575650 -111713012 - MIR3 SINE MIR -71 137 6 426 328 121 0 chr4 72575767 72575965 -111712697 - MIR SINE MIR -1 261 40 226 240 131 32 chr4 72576654 72576768 -111711894 - MIR SINE MIR -65 143 38 266 353 75 8 chr4 72576914 72577047 -111711615 + MIR SINE MIR 5 146 -116 272 261 14 0 chr4 72577048 72577117 -111711545 + MLT1L LTR MaLR 10 79 -536 794 259 70 19 chr4 72577666 72578113 -111710549 + LTR33 LTR ERVL 10 500 -21 289 200 18 0 chr4 72579280 72579335 -111709327 - MLT1J2 LTR MaLR -323 127 72 846 343 33 16 chr4 72579404 72579856 -111708806 + LTR16B LTR ERVL 3 462 -2 1601 156 6 67 chr4 72579990 72580305 -111708357 + AluJb SINE Alu 15 310 -2 252 254 0 15 chr4 72580825 72580892 -111707770 - L2 LINE L2 -19 3294 3229 2117 110 0 45 chr4 72580944 72581254 -111707408 + AluSg SINE Alu 1 296 -14 1620 126 153 0 chr4 72581264 72581526 -111707136 + AluSq SINE Alu 2 303 0 285 205 62 142 chr4 72582161 72582237 -111706425 - MIR3 SINE MIR -22 186 105 2099 110 40 0 chr4 72582237 72582537 -111706125 + AluSx SINE Alu 1 312 0 285 205 62 142 chr4 72582537 72582661 -111706001 - MIR3 SINE MIR -103 105 4 841 309 72 36 chr4 72584978 72585534 -111703128 + L1ME4a LINE L1 5502 6077 -44 3200 183 83 8 chr4 72585720 72586333 -111702329 - MER67B LTR ERV1 0 661 3 2514 84 0 0 chr4 72586368 72586679 -111701983 + AluSx SINE Alu 1 311 -1 310 284 178 19 chr4 72586905 72587113 -111701549 + LTR16A LTR ERVL 198 438 -12 361 353 75 8 chr4 72587474 72587607 -111701055 + L2 LINE L2 3129 3270 -2 326 258 86 11 chr4 72587652 72587745 -111700917 - MIR SINE MIR -4 258 159 486 251 70 43 chr4 72587749 72587861 -111700801 - LTR16A LTR ERVL -4 446 339 1528 184 32 32 chr4 72587861 72588171 -111700491 + AluJb SINE Alu 1 310 -2 486 251 70 43 chr4 72588171 72588364 -111700298 - LTR16A LTR ERVL -111 339 57 407 283 66 26 chr4 72588391 72588543 -111700119 - MIR SINE MIR -102 160 3 210 327 77 39 chr4 72588744 72588848 -111699814 - L2 LINE L2 -42 3230 3123 637 264 130 9 chr4 72589397 72589628 -111699034 + MIR SINE MIR 1 259 -3 244 299 0 13 chr4 72589657 72589734 -111698928 - L2 LINE L2 -36 3277 3202 1788 136 72 0 chr4 72589932 72590197 -111698465 - AluSx SINE Alu -28 284 1 394 258 108 25 chr4 72590231 72590351 -111698311 + L2 LINE L2 3143 3272 0 315 313 115 31 chr4 72590364 72590474 -111698188 - L2 LINE L2 -256 3016 2917 4637 169 55 4 chr4 72590474 72591219 -111697443 - LTR39 LTR ERV1 0 783 1 315 313 115 31 chr4 72591219 72591429 -111697233 - L2 LINE L2 -355 2917 2665 886 283 140 30 chr4 72591547 72591975 -111696687 - MLT1H LTR MaLR 0 549 75 981 166 0 37 chr4 72595845 72596008 -111692654 + AluJo SINE Alu 1 157 -155 201 74 0 0 chr4 72596008 72596035 -111692627 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 250 143 0 0 chr4 72596615 72596650 -111692012 + Alu SINE Alu 1 35 -266 666 193 0 140 chr4 72597212 72597419 -111691243 - MER5B DNA MER1_type 0 178 1 2255 108 7 3 chr4 72598772 72599078 -111689584 + AluSx SINE Alu 1 307 -5 22 35 0 0 chr4 72599539 72599568 -111689094 + AT_rich Low_complexity Low_complexity 1 29 0 2408 86 3 0 chr4 72599772 72600074 -111688588 + AluSp SINE Alu 1 303 -10 704 157 0 0 chr4 72600654 72600762 -111687900 + FLAM_C SINE Alu 1 108 -35 21 0 0 0 chr4 72600793 72600814 -111687848 + AT_rich Low_complexity Low_complexity 1 21 0 212 182 91 0 chr4 72601585 72601629 -111687033 - L2 LINE L2 -7 3265 3218 22 0 0 0 chr4 72603104 72603126 -111685536 + GC_rich Low_complexity Low_complexity 1 22 0 507 217 66 45 chr4 72604709 72604907 -111683755 + L1MC5 LINE L1 7724 7925 -36 290 344 0 0 chr4 72607162 72607258 -111681404 - L2 LINE L2 -5 3308 3213 2005 157 0 3 chr4 72607691 72607990 -111680672 + AluJb SINE Alu 1 298 -14 1592 92 0 0 chr4 72609171 72609366 -111679296 + AluSc SINE Alu 98 292 -17 618 208 48 30 chr4 72609458 72609626 -111679036 - MER69 DNA AcHobo 0 2526 2356 2078 198 109 30 chr4 72609630 72610373 -111678289 - MLT1D LTR MaLR 0 505 64 2217 110 0 28 chr4 72610415 72610448 -111678214 - AluSx SINE Alu -4 308 276 185 0 40 0 chr4 72610448 72610473 -111678189 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2217 110 0 28 chr4 72610473 72610756 -111677906 - AluSx SINE Alu -36 276 1 655 122 0 0 chr4 72610756 72610846 -111677816 + U6 snRNA snRNA 18 107 0 1864 166 20 0 chr4 72610863 72611164 -111677498 + AluJo SINE Alu 5 311 -1 428 236 0 47 chr4 72611179 72611285 -111677377 - MLT1D LTR MaLR -404 101 1 * 642 244 52 3 chr4 72611285 72611427 -111677235 - MLT1G1 LTR MaLR -387 162 13 2578 221 86 28 chr4 72611439 72612288 -111676374 - MER69 DNA AcHobo -171 2355 1458 626 289 52 16 chr4 72612264 72612458 -111676204 - MER69 DNA AcHobo -2227 299 99 * 3341 142 10 15 chr4 72612458 72612512 -111676150 - MLT2B1 LTR ERVL 0 520 467 2172 187 0 0 chr4 72612512 72612859 -111675803 + MER7A DNA MER2_type 2 346 0 3341 142 10 15 chr4 72612859 72613327 -111675335 - MLT2B1 LTR ERVL -53 467 1 432 212 35 0 chr4 72613327 72613408 -111675254 - MER69 DNA AcHobo -2423 103 20 564 306 78 16 chr4 72613409 72613654 -111675008 - MIR SINE MIR -1 261 2 312 301 73 52 chr4 72614816 72614952 -111673710 - L2 LINE L2 -1 3271 3133 935 135 0 0 chr4 72615329 72615470 -111673192 - AluSp/q SINE Alu -3 310 170 2300 84 0 7 chr4 72615638 72615935 -111672727 - AluY SINE Alu -16 295 1 228 327 40 0 chr4 72615975 72616076 -111672586 - L1ME4a LINE L1 -53 6068 5964 245 98 0 20 chr4 72616077 72616128 -111672534 + (TA)n Simple_repeat Simple_repeat 2 51 0 1513 176 67 3 chr4 72616195 72616479 -111672183 + AluJo SINE Alu 1 302 -10 362 230 86 43 chr4 72616668 72616830 -111671832 - L1ME4a LINE L1 -222 5948 5776 773 181 0 24 chr4 72616830 72616957 -111671705 + FLAM_C SINE Alu 1 124 -9 362 230 86 43 chr4 72616957 72616981 -111671681 - L1ME4a LINE L1 -394 5776 5754 1332 132 37 12 chr4 72616992 72617235 -111671427 + MER6 DNA MER2_type 616 864 -1 868 170 12 35 chr4 72617353 72617524 -111671138 - L1PB4 LINE L1 0 6156 5990 363 328 106 22 chr4 72617675 72617855 -111670807 + MIR SINE MIR 12 206 -56 370 244 231 26 chr4 72617900 72618056 -111670606 + MIR SINE MIR 47 234 -28 2120 144 0 6 chr4 72619256 72619569 -111669093 - AluSx SINE Alu -1 311 1 185 310 219 13 chr4 72619972 72620127 -111668535 - L2 LINE L2 -3 3310 3124 304 253 63 0 chr4 72620346 72620425 -111668237 + LTR16C LTR ERVL 188 271 -220 3643 295 71 50 chr4 72620475 72622459 -111666203 + ERVL LTR ERVL 2233 4257 -1507 859 188 35 59 chr4 72674290 72674492 -111614170 - MER20 DNA MER1_type -22 197 1 274 158 70 0 chr4 72676353 72676410 -111612252 - L1MA9 LINE L1 -4 6308 6248 876 153 218 51 chr4 72676410 72676626 -111612036 + AluSp SINE Alu 35 286 -27 517 187 263 6 chr4 72676626 72676797 -111611865 - L1MA9 LINE L1 -56 6256 6042 289 244 105 12 chr4 72676914 72677000 -111611662 - HERVL LTR ERVL -2604 3050 2957 698 236 52 21 chr4 72677314 72677505 -111611157 - REP3 LTR ERV -311 251 55 594 230 151 0 chr4 72678513 72678665 -111609997 + MLT1D LTR MaLR 261 435 -70 235 183 150 0 chr4 72678726 72678786 -111609876 + MLT1D LTR MaLR 436 504 -1 1939 103 113 26 chr4 72679250 72679638 -111609024 - L1PA13 LINE L1 -17 6146 5725 243 209 104 0 chr4 72679884 72679951 -111608711 + MLT2C1 LTR ERVL 32 105 -292 396 328 104 14 chr4 72680613 72680970 -111607692 - HERVL LTR ERVL -547 5107 4719 268 237 62 68 chr4 72682241 72682418 -111606244 - LTR16A1 LTR ERVL -30 427 252 356 315 112 11 chr4 72683017 72683195 -111605467 + MLT1K LTR MaLR 376 571 -17 391 0 0 0 chr4 72684190 72684235 -111604427 + MADE1 DNA Mariner 2 46 -34 2016 120 230 2 chr4 72684716 72685150 -111603512 - L1MA2 LINE L1 -5 6299 5767 1495 192 111 0 chr4 72686176 72686520 -111602142 - MER57A LTR ERV1 -9 394 13 250 0 0 0 chr4 72686505 72686532 -111602130 + MER57A LTR ERV1 9 35 -368 * 3473 196 188 17 chr4 72686709 72686748 -111601914 - L1MA9 LINE L1 -155 6873 6842 1701 162 52 0 chr4 72686748 72687019 -111601643 + AluSx SINE Alu 1 285 -27 3473 196 188 17 chr4 72687019 72688843 -111599819 - L1MA9 LINE L1 -186 6842 4607 872 242 95 101 chr4 72689715 72690198 -111598464 + MLT1F1 LTR MaLR 86 565 -2 335 200 53 0 chr4 72690793 72690868 -111597794 - Charlie5 DNA MER1_type 0 2624 2546 8196 133 126 65 chr4 72691132 72691316 -111597346 - L1MA9 LINE L1 -5018 1845 1674 240 229 9 162 chr4 72691316 72691421 -111597241 - MER39 LTR ERV1 -253 454 366 8196 133 126 65 chr4 72691421 72692870 -111595792 - L1MA9 LINE L1 -5189 1674 2 239 250 136 49 chr4 72696427 72696611 -111592051 + MLT1J LTR MaLR 269 468 -43 461 238 103 22 chr4 72696935 72697120 -111591542 - LTR16C LTR ERVL -3 488 289 268 322 107 0 chr4 72697151 72697272 -111591390 - LTR16C LTR ERVL -277 214 81 1494 199 92 9 chr4 72698492 72698809 -111589853 + LTR32 LTR ERVL 17 359 -112 275 130 109 0 chr4 72698882 72698928 -111589734 + LTR32 LTR ERVL 317 367 -104 631 206 99 7 chr4 72698928 72699069 -111589593 + LTR32 LTR ERVL 316 469 -2 249 287 98 25 chr4 72699414 72699536 -111589126 - LTR16C LTR ERVL -167 324 194 230 138 0 121 chr4 72699793 72699851 -111588811 - L2 LINE L2 -2075 1239 1189 1033 124 76 22 chr4 72700339 72700524 -111588138 - L1PB2 LINE L1 -2 6149 5955 758 295 132 24 chr4 72701023 72701393 -111587269 - LTR16A LTR ERVL -7 443 34 419 313 135 16 chr4 72702607 72702911 -111585751 - LTR16B LTR ERVL -19 445 106 719 341 79 10 chr4 72703518 72703992 -111584670 - HERVL LTR ERVL -881 4604 4096 248 254 75 45 chr4 72706438 72706572 -111582090 - LTR16A1 LTR ERVL -81 376 239 185 292 21 90 chr4 72706702 72706846 -111581816 + L3 LINE CR1 71 204 -1373 1856 155 16 59 chr4 72708417 72708791 -111579871 - THE1B LTR MaLR -2 362 5 1839 176 58 27 chr4 72709093 72709626 -111579036 - MLT2A2 LTR ERVL -8 546 2 255 167 0 0 chr4 72710579 72710615 -111578047 + MLT1K LTR MaLR 188 223 -365 402 281 54 36 chr4 72710785 72710952 -111577710 + MLT1K LTR MaLR 411 580 -8 593 207 114 96 chr4 72715653 72715977 -111572685 - LTR16A1 LTR ERVL -114 343 14 3050 94 67 0 chr4 72717029 72717594 -111571068 - L1P3 LINE L1 -672 5482 4889 504 293 140 29 chr4 72718657 72718971 -111569691 - LTR16A1 LTR ERVL -106 351 3 337 202 36 25 chr4 72721074 72721178 -111567484 + MLT1E LTR MaLR 1 108 -466 2024 152 103 0 chr4 72721254 72721584 -111567078 - THE1B LTR MaLR 0 364 1 1252 219 98 123 chr4 72721745 72722139 -111566523 - MER44D DNA MER2_type -1884 603 171 12991 39 25 0 chr4 72722139 72724472 -111564190 + L1PA4 LINE L1 3783 6152 -3 1252 219 98 123 chr4 72724472 72724639 -111564023 - MER44D DNA MER2_type -2316 171 1 703 256 64 25 chr4 72724671 72724874 -111563788 + MLT1E LTR MaLR 375 585 -8 23 0 0 0 chr4 72728545 72728568 -111560094 + AT_rich Low_complexity Low_complexity 1 23 0 6142 61 143 61 chr4 72728606 72729683 -111558979 - MER11A LTR ERVK 0 1266 1 338 256 96 16 chr4 72729846 72729971 -111558691 - MLT1J LTR MaLR -333 178 44 288 232 0 0 chr4 72731081 72731137 -111557525 + MLT1L LTR MaLR 424 479 -136 350 234 175 6 chr4 72731575 72731746 -111556916 - LTR16C LTR ERVL -4 487 288 285 260 137 0 chr4 72733939 72734066 -111554596 - LTR16C LTR ERVL -4 487 312 991 301 84 5 chr4 72734931 72735310 -111553352 - LTR16A LTR ERVL -11 439 31 275 259 59 47 chr4 72738150 72738235 -111550427 + MLT1K LTR MaLR 188 273 -315 352 277 92 36 chr4 72738337 72738532 -111550130 + MLT1K LTR MaLR 376 581 -7 387 333 44 6 chr4 72739702 72739882 -111548780 - LTR16B LTR ERVL -164 300 114 278 279 19 10 chr4 72740070 72740174 -111548488 - ERVL LTR ERVL -441 5323 5219 1934 144 46 25 chr4 72740961 72741328 -111547334 + THE1C LTR MaLR 1 375 0 556 228 108 89 chr4 72743637 72743961 -111544701 - LTR16A1 LTR ERVL -114 343 14 6089 83 61 0 chr4 72745074 72746294 -111542368 - L1PA8 LINE L1 -15 6157 4889 1375 218 136 57 chr4 72747307 72747816 -111540846 - MER44D DNA MER2_type -1 604 1 723 252 18 37 chr4 72747844 72748062 -111540600 + MLT1E LTR MaLR 375 588 -5 236 244 0 0 chr4 72748078 72748123 -111540539 - Charlie8 DNA MER1_type -2198 219 175 309 304 92 22 chr4 72751840 72752067 -111536595 - MLT1J LTR MaLR -254 257 15 7521 122 63 15 chr4 72752533 72753760 -111534902 - HSMAR1 DNA Mariner 0 1287 2 255 261 52 52 chr4 72754415 72754530 -111534132 + MLT1J LTR MaLR 257 371 -140 * 266 186 0 0 chr4 72754500 72754543 -111534119 + MLT1L LTR MaLR 440 482 -133 447 264 161 6 chr4 72754989 72755163 -111533499 - LTR16C LTR ERVL -3 488 288 727 312 79 13 chr4 72755774 72756152 -111532510 - LTR16A LTR ERVL -23 427 25 285 387 24 0 chr4 72757985 72758109 -111530553 - LTR16B LTR ERVL -190 274 148 715 293 63 63 chr4 72759638 72760161 -111528501 - ERVL LTR ERVL -1118 4646 4124 39206 81 14 7 chr4 72760261 72766357 -111522305 - L1PA6 LINE L1 -8 6146 11 12533 148 16 16 chr4 72766367 72768460 -111520202 - L1P LINE L1 -4043 2103 11 231 94 0 0 chr4 72771048 72771080 -111517582 - tRNA-Gly-GGA tRNA tRNA -38 37 6 1199 213 113 39 chr4 72771102 72771491 -111517171 - LTR42 LTR ERVL 0 495 78 267 239 84 0 chr4 72772213 72772284 -111516378 + MLT1K LTR MaLR 505 581 -7 1309 196 109 39 chr4 72772536 72772770 -111515892 - MER7A DNA MER2_type -2706 332 71 1748 149 71 0 chr4 72772770 72773039 -111515623 + AluSx SINE Alu 1 288 -24 1309 196 109 39 chr4 72773039 72773115 -111515547 - MER7A DNA MER2_type -2967 71 2 2228 58 52 7 chr4 72773212 72773503 -111515159 + AluY SINE Alu 1 304 -7 991 183 123 12 chr4 72773595 72773846 -111514816 - MER34B LTR ERV1 -127 438 160 5341 157 111 11 chr4 72773910 72775806 -111512856 - L1PA13 LINE L1 -6 6157 4076 349 233 120 16 chr4 72775935 72776091 -111512571 - MER34C LTR ERV1 -404 161 10 655 331 72 0 chr4 72778656 72778934 -111509728 - ERVL LTR ERVL -1330 4434 4137 2180 24 0 0 chr4 72779875 72780123 -111508539 + L1HS LINE L1 5908 6155 0 447 305 151 13 chr4 72780975 72781280 -111507382 - LTR16A LTR ERVL -78 372 26 330 255 91 125 chr4 72782508 72782932 -111505730 + MLT1F1 LTR MaLR 22 431 -136 320 91 0 0 chr4 72784668 72784712 -111503950 - THE1B-int LTR MaLR -381 1199 1156 4346 84 32 9 chr4 72784714 72785719 -111502943 - MER11A LTR ERVK 0 1266 1 4604 123 12 10 chr4 72785719 72786395 -111502267 - THE1B-int LTR MaLR -421 1159 483 * 24876 78 13 4 chr4 72786391 72792479 -111496183 - L1PA5 LINE L1 0 6154 11 3497 93 22 4 chr4 72792482 72792977 -111495685 - THE1B-int LTR MaLR -1075 505 2 1979 183 39 17 chr4 72792978 72793334 -111495328 - THE1B LTR MaLR 0 364 1 1776 160 36 0 chr4 72794110 72794385 -111494277 + AluSx SINE Alu 1 285 -27 1874 129 55 7 chr4 72794506 72794992 -111493670 - LTR9B LTR ERV1 -86 558 1 7330 145 51 18 chr4 72794993 72796455 -111492207 - HUERS-P3b LTR ERV1 -7 7411 5379 3173 102 8 23 chr4 72796462 72796933 -111491729 - HUERS-P3b LTR ERV1 -3882 3536 3073 2085 189 47 3 chr4 72796933 72797315 -111491347 + LTR8 LTR ERV1 1 399 -292 1229 78 30 6 chr4 72797315 72797481 -111491181 - HUERS-P3b LTR ERV1 -4760 2658 2489 1221 221 56 65 chr4 72797537 72797997 -111490665 - LTR10B LTR ERV1 -2 545 1 16843 215 45 45 chr4 72797997 72802798 -111485864 - LTR10B-int LTR ERV1 0 7399 2686 26802 42 8 3 chr4 72802802 72806890 -111481772 - L1PA4 LINE L1 0 6155 2048 704 201 14 14 chr4 72806890 72807034 -111481628 - LTR10B-int LTR ERV1 -6502 147 4 1327 211 49 73 chr4 72807034 72807504 -111481158 - LTR10B LTR ERV1 0 547 1 5046 134 28 9 chr4 72807504 72808382 -111480280 - BaEV-int LTR ERV1 -4927 2491 1534 2224 210 19 28 chr4 72808382 72808854 -111479808 + HUERS-P3b LTR ERV1 34 501 -6917 1053 155 63 8 chr4 72808961 72809171 -111479491 - LTR9B LTR ERV1 0 644 420 238 279 55 35 chr4 72809867 72810053 -111478609 + L2 LINE L2 3036 3270 -43 431 303 32 19 chr4 72811280 72811435 -111477227 - LTR33 LTR ERVL -350 171 15 1230 236 84 44 chr4 72811982 72812410 -111476252 - LTR2 LTR ERV1 0 449 5 302 83 0 21 chr4 72812818 72812866 -111475796 - MADE1 DNA Mariner -31 49 3 446 273 45 0 chr4 72813773 72813905 -111474757 - MER34B LTR ERV1 -187 378 241 246 118 75 161 chr4 72815000 72815093 -111473569 - MER34B LTR ERV1 -480 85 1 332 257 129 48 chr4 72816765 72816975 -111471687 - HERV16 LTR ERVL -1147 4338 4112 1696 188 112 25 chr4 72818813 72819306 -111469356 + MER39 LTR ERV1 33 618 -89 277 282 100 0 chr4 72821086 72821196 -111467466 - LTR16A LTR ERVL -323 127 7 365 302 36 93 chr4 72822345 72822679 -111465983 + MLT1F1 LTR MaLR 247 561 -6 2789 0 0 17 chr4 72873835 72874137 -111414525 - AluYa5 SINE Alu -14 297 1 478 289 36 31 chr4 72874520 72874714 -111413948 + LTR16C LTR ERVL 163 357 -134 248 281 0 0 chr4 72874768 72874832 -111413830 + LTR16C LTR ERVL 428 491 0 445 154 0 0 chr4 72875294 72875359 -111413303 - HERV16 LTR ERVL -2277 2719 2655 330 400 13 0 chr4 72875456 72875606 -111413056 - HERV16 LTR ERVL -2464 2532 2381 1748 207 48 90 chr4 72875749 72876055 -111412607 - L1MA7 LINE L1 -20 6271 5998 1772 170 14 3 chr4 72876055 72876338 -111412324 - AluSx SINE Alu -26 286 1 1748 207 48 90 chr4 72876338 72876600 -111412062 - L1MA7 LINE L1 -293 5998 5727 797 212 170 102 chr4 72877760 72878161 -111410501 - MLT1A1 LTR MaLR 0 365 1 1475 186 70 18 chr4 72878161 72878488 -111410174 - MLT1A1-int LTR MaLR 0 1735 1392 2168 182 17 43 chr4 72878977 72879443 -111409219 + LTR22A LTR ERVK 5 458 0 3982 230 101 41 chr4 72880026 72881279 -111407383 - MLT1A1-int LTR MaLR -380 1355 27 282 109 46 0 chr4 72881299 72881362 -111407300 - MSTD LTR MaLR -2 437 304 1030 224 100 0 chr4 72881379 72881629 -111407033 + AluJo SINE Alu 10 284 -28 661 214 16 149 chr4 72881629 72881938 -111406724 - MLT1A1 LTR MaLR -66 299 32 713 133 115 0 chr4 72882286 72882399 -111406263 + FLAM_C SINE Alu 5 130 -3 318 236 101 101 chr4 72882907 72883036 -111405626 + LTR16C LTR ERVL 344 475 -16 1984 183 31 3 chr4 72883036 72883391 -111405271 + MLT1A1 LTR MaLR 1 365 0 318 236 101 101 chr4 72883391 72883409 -111405253 + LTR16C LTR ERVL 474 491 0 500 286 48 43 chr4 72883897 72884268 -111404394 + LTR16B LTR ERVL 10 464 0 296 301 121 0 chr4 72884270 72884353 -111404309 + HERV16 LTR ERVL 3 95 -4901 2101 132 3 0 chr4 72884506 72884794 -111403868 - AluSx SINE Alu -23 289 1 516 218 139 0 chr4 72884813 72884978 -111403684 - L1MC2 LINE L1 -19 6325 6138 * 6164 232 41 13 chr4 72884975 72887118 -111401544 + L1PA15-16 LINE L1 1 1555 -5294 5062 229 79 12 chr4 72887474 72889692 -111398970 + L1PA15-16 LINE L1 1394 3801 -3048 17269 90 22 20 chr4 72889799 72892564 -111396098 - HERVK3 LTR ERVK -4374 2869 36 2882 132 9 2 chr4 72892570 72892994 -111395668 - LTR3 LTR ERVK -5 427 1 307 241 84 12 chr4 72893005 72893088 -111395574 + L2 LINE L2 3182 3270 -43 2344 97 13 0 chr4 72893456 72893765 -111394897 + AluSp SINE Alu 1 313 0 271 250 40 30 chr4 72897725 72897825 -111390837 - LTR16B LTR ERVL -10 454 354 2213 104 0 0 chr4 72898268 72898557 -111390105 + AluY SINE Alu 1 289 -22 296 239 57 0 chr4 72899774 72899862 -111388800 + MLT1K LTR MaLR 488 580 -8 685 311 43 20 chr4 72900846 72901151 -111387511 - LTR16B LTR ERVL -13 451 140 329 294 116 38 chr4 72901333 72901626 -111387036 - ERVL LTR ERVL -414 5350 5035 415 267 86 16 chr4 72902166 72902355 -111386307 - ERVL LTR ERVL -982 4307 3840 2796 83 50 101 chr4 72903385 72903888 -111384774 - L1PB1 LINE L1 -1 6150 5674 594 156 16 25 chr4 72904537 72904659 -111384003 - LOR1b LTR ERV1 -1 460 340 820 161 7 14 chr4 72904686 72904829 -111383833 - LOR1a LTR ERV1 -355 142 1 533 123 0 12 chr4 72905496 72905577 -111383085 + AluJb SINE Alu 207 286 -26 5099 197 68 10 chr4 72907997 72910101 -111378561 - L1PA16 LINE L1 -20 6146 3929 478 266 87 11 chr4 72911804 72911988 -111376674 + LTR16A LTR ERVL 177 374 -76 370 347 60 15 chr4 72912313 72912512 -111376150 + HERV16 LTR ERVL 1962 2169 -2827 939 201 89 56 chr4 72912802 72913106 -111375556 + MLT2C1 LTR ERVL 1 314 -83 11183 255 80 14 chr4 72913154 72916542 -111372120 + ERVL-C1 LTR ERVL 276 3986 -1778 2789 243 80 17 chr4 72916535 72917556 -111371106 + ERVL-C1 LTR ERVL 4590 5653 -1 * 931 237 49 78 chr4 72917556 72917965 -111370697 + MLT2C1 LTR ERVL 1 397 0 341 266 150 24 chr4 72918534 72918741 -111369921 - L1MC4a LINE L1 -1941 5867 5635 287 297 174 37 chr4 72918888 72919195 -111369467 + LTR16B LTR ERVL 21 367 -97 1794 201 135 18 chr4 72919195 72919647 -111369015 + MLT1D LTR MaLR 1 505 0 287 297 174 37 chr4 72919647 72919751 -111368911 + LTR16B LTR ERVL 367 455 -9 202 152 0 43 chr4 72920190 72920236 -111368426 - MIR SINE MIR -60 202 159 799 282 101 17 chr4 72920693 72920991 -111367671 - HERV16 LTR ERVL -4328 668 346 3467 141 106 9 chr4 72921012 72921671 -111366991 - L1MA7 LINE L1 -1 6290 5568 2004 173 55 99 chr4 72921671 72922237 -111366425 + MLT2B3 LTR ERVL 1 541 -13 1538 135 48 66 chr4 72922249 72922624 -111366038 - L1MA7 LINE L1 -716 5575 5209 229 147 0 0 chr4 72922631 72922665 -111365997 + MLT2B3 LTR ERVL 197 230 -285 279 0 0 0 chr4 72922665 72922696 -111365966 + (CA)n Simple_repeat Simple_repeat 1 31 0 252 308 19 0 chr4 72922699 72922806 -111365856 + (CTCA)n Simple_repeat Simple_repeat 4 112 0 * 394 286 0 6 chr4 72922755 72922810 -111365852 + CT-rich Low_complexity Low_complexity 1 55 -112 2122 134 0 0 chr4 72922810 72923108 -111365554 - AluSx SINE Alu -14 298 1 394 286 0 6 chr4 72923108 72923220 -111365442 + CT-rich Low_complexity Low_complexity 55 167 0 * 455 260 23 0 chr4 72923125 72923298 -111365364 + (CTCA)n Simple_repeat Simple_repeat 2 178 0 305 323 0 0 chr4 72923287 72923454 -111365208 + CT-rich Low_complexity Low_complexity 1 167 0 * 1243 240 38 2 chr4 72923461 72923723 -111364939 + MLT2B3 LTR ERVL 225 488 -66 1206 186 42 0 chr4 72923727 72923942 -111364720 + MER7A DNA MER2_type 1 222 -124 4160 198 45 7 chr4 72923943 72924751 -111363911 + ERVL-B3 LTR ERVL 3019 3856 -1908 5238 130 179 9 chr4 72924792 72925817 -111362845 + Tigger3b DNA MER2_type 32 1230 -1 8964 165 82 5 chr4 72925817 72927336 -111361326 + ERVL-B3 LTR ERVL 3872 5533 -231 2188 121 0 0 chr4 72927336 72927626 -111361036 - AluSx SINE Alu -22 290 1 8964 165 82 5 chr4 72927626 72927774 -111360888 + ERVL-B3 LTR ERVL 5533 5668 -96 304 95 0 0 chr4 72927773 72927815 -111360847 + Ricksha DNA DNA 305 346 -908 * 2669 186 28 58 chr4 72927815 72928386 -111360276 + MLT2B3 LTR ERVL 1 554 0 3504 212 167 12 chr4 72928428 72929537 -111359125 + Charlie1 DNA MER1_type 1480 2760 -1 240 363 124 0 chr4 72930938 72931051 -111357611 - L2 LINE L2 -242 3030 2904 504 205 335 20 chr4 72932293 72932493 -111356169 - MLT1A2 LTR MaLR -12 537 275 2041 112 11 3 chr4 72932853 72933138 -111355524 - AluSx SINE Alu -12 300 14 322 318 0 0 chr4 72933174 72933262 -111355400 - L1MC/D LINE L1 -2143 5665 5578 1013 242 47 0 chr4 72933406 72933662 -111355000 - L1MC4 LINE L1 -3 8039 7772 * 2342 195 183 35 chr4 72933656 72934232 -111354430 - L1MC4 LINE L1 -432 7376 6672 910 255 52 0 chr4 72934232 72934444 -111354218 - MER58A DNA MER1_type 0 224 2 2342 195 183 35 chr4 72934444 72934683 -111353979 - L1MC4 LINE L1 -1136 6672 6470 515 191 0 104 chr4 72934855 72934970 -111353692 - FRAM SINE Alu -8 168 66 633 188 0 0 chr4 72934988 72935089 -111353573 - AluSg SINE Alu -6 303 203 1532 100 0 10 chr4 72935222 72935422 -111353240 - AluSg SINE Alu -112 198 1 1553 142 196 33 chr4 72935472 72935803 -111352859 + Tigger2 DNA MER2_type 2334 2718 0 23 0 0 0 chr4 72935810 72935833 -111352829 + AT_rich Low_complexity Low_complexity 1 23 0 518 323 36 23 chr4 72937648 72937868 -111350794 + HERV16 LTR ERVL 2674 2896 -2100 * 1252 323 71 16 chr4 72937861 72938874 -111349788 - HERV16 LTR ERVL -3817 1179 101 33 0 0 0 chr4 72940053 72940086 -111348576 + AT_rich Low_complexity Low_complexity 1 33 0 4503 65 7 0 chr4 72940086 72940637 -111348025 - L1PA7 LINE L1 -24 6130 5576 1514 191 20 114 chr4 72940882 72941285 -111347377 - MLT1A1 LTR MaLR 0 365 1 984 223 34 59 chr4 72942667 72942972 -111345690 - MLT1A2 LTR MaLR -50 324 21 38989 83 14 7 chr4 72943149 72946939 -111341723 - L1PA6 LINE L1 -6 6148 2296 195 42 0 0 chr4 72946939 72946963 -111341699 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 38989 83 14 7 chr4 72946963 72949265 -111339397 - L1PA6 LINE L1 -3858 2296 11 6035 88 37 22 chr4 72950734 72951843 -111336819 + pTR5 LTR ERV1 741 2025 -413 355 128 54 76 chr4 72951843 72951935 -111336727 + LTR30 LTR ERV1 230 302 -75 1506 103 10 9 chr4 72951941 72952169 -111336493 + pTR5 LTR ERV1 142 392 -2046 8149 177 21 3 chr4 72952767 72955219 -111333443 + L1PA16 LINE L1 3670 6163 -3 1047 157 130 5 chr4 72955226 72955442 -111333220 - L1MC2 LINE L1 -194 6150 5908 675 194 113 0 chr4 72955443 72955603 -111333059 + MER58A DNA MER1_type 43 220 -4 1959 317 37 28 chr4 72956055 72956144 -111332518 + MERVL LTR ERVL 596 683 -4313 2862 147 52 92 chr4 72956144 72956492 -111332170 + MLT2B3 LTR ERVL 1 318 -236 2443 87 0 3 chr4 72956492 72956802 -111331860 + AluY SINE Alu 1 309 -2 2862 147 52 92 chr4 72956802 72957030 -111331632 + MLT2B3 LTR ERVL 318 554 0 1959 317 37 28 chr4 72957030 72957886 -111330776 + MERVL LTR ERVL 683 1550 -3446 969 317 93 24 chr4 72958071 72958856 -111329806 + MERVL LTR ERVL 3830 4943 -531 704 218 100 6 chr4 72958867 72959037 -111329625 + LTR16C LTR ERVL 306 491 0 992 174 36 36 chr4 72959179 72959374 -111329288 - L1PB4 LINE L1 0 6156 5962 740 176 65 0 chr4 72959374 72959527 -111329135 + L1 LINE L1 5127 5289 -857 270 283 50 101 chr4 72959884 72960043 -111328619 - MER102b DNA MER1_type 0 341 191 206 337 63 11 chr4 72960235 72960330 -111328332 - MIR SINE MIR -59 149 50 1725 209 60 42 chr4 72960849 72961303 -111327359 - LTR16B LTR ERVL -2 462 1 625 336 105 15 chr4 72961954 72962287 -111326375 - LTR16A LTR ERVL 0 450 88 671 349 29 18 chr4 72962331 72962612 -111326050 - LTR16C LTR ERVL -120 371 88 2143 126 3 0 chr4 72962868 72963162 -111325500 + AluSq SINE Alu 1 295 -18 225 0 0 0 chr4 72963269 72963294 -111325368 + (TTA)n Simple_repeat Simple_repeat 3 27 0 7784 42 0 0 chr4 72963294 72964801 -111323861 - L1PA4 LINE L1 -18 6137 4631 599 157 0 0 chr4 72965734 72965842 -111322820 - ALR/Alpha Satellite centromeric 0 171 64 537 349 96 11 chr4 72966048 72966423 -111322239 + L2 LINE L2 2476 2882 -432 789 266 78 51 chr4 72966432 72966766 -111321896 - LTR16C LTR ERVL 0 491 149 902 308 43 6 chr4 72966830 72967225 -111321437 - HERV16 LTR ERVL -1906 3090 2650 624 287 18 6 chr4 72967758 72967922 -111320740 + MER96 DNA MER1_type? 9 174 -1 1565 294 84 50 chr4 72968024 72968829 -111319833 + HERV16 LTR ERVL 561 1393 -3603 2038 117 0 3 chr4 72970934 72971239 -111317423 - AluY SINE Alu 0 304 1 2271 157 15 0 chr4 72972232 72972564 -111316098 + MER1B DNA MER1_type 1 337 0 398 221 239 12 chr4 72973931 72974094 -111314568 + MLT1L LTR MaLR 328 527 -88 1736 100 32 39 chr4 72974116 72974361 -111314301 - L1MA5 LINE L1 -6 6294 6050 1678 193 0 23 chr4 72974361 72974662 -111314000 - AluJo SINE Alu -18 294 1 1736 100 32 39 chr4 72974662 72974696 -111313966 - L1MA5 LINE L1 -250 6050 6017 569 182 36 0 chr4 72975794 72975904 -111312758 - Charlie1 DNA MER1_type -12 2749 2636 1276 216 74 15 chr4 72976450 72976774 -111311888 - MER2 DNA MER2_type 0 344 2 1690 187 7 0 chr4 72980040 72980329 -111308333 - AluJo SINE Alu -21 291 1 1890 157 3 0 chr4 72982959 72983246 -111305416 + AluJb SINE Alu 1 288 -24 302 227 182 0 chr4 72984200 72984310 -111304352 - LTR33 LTR ERVL 0 521 392 837 142 8 16 chr4 72984319 72984446 -111304216 + AluJb SINE Alu 2 127 -185 637 291 77 15 chr4 72984506 72984833 -111303829 - LTR33 LTR ERVL -174 347 1 240 253 53 13 chr4 72984837 72984912 -111303750 + MER5A DNA MER1_type 35 112 -77 384 292 154 15 chr4 72985002 72985269 -111303393 + MLT1J2 LTR MaLR 79 382 -68 314 278 117 45 chr4 72985273 72985539 -111303123 - L1MC5 LINE L1 -41 7920 7636 279 237 165 52 chr4 72985540 72985789 -111302873 - L1MC5 LINE L1 -406 7555 7279 258 247 82 0 chr4 72987905 72987978 -111300684 + MIR3 SINE MIR 111 189 -19 2368 154 15 18 chr4 72988656 72989045 -111299617 - MLT1B LTR MaLR -2 388 1 5525 79 12 32 chr4 72989070 72989742 -111298920 - L1PA6 LINE L1 -5 6149 5492 2168 115 0 3 chr4 72989742 72990038 -111298624 - AluY SINE Alu -16 295 1 5525 79 12 32 chr4 72990038 72990113 -111298549 - L1PA6 LINE L1 -662 5492 5417 28894 41 6 1 chr4 72990113 72995642 -111293020 - L1PA3 LINE L1 -22 6133 578 846 20 0 0 chr4 72995609 72995707 -111292955 - L1PA3 LINE L1 -6048 98 1 * 37845 93 13 11 chr4 72995708 73001141 -111287521 - L1P2 LINE L1 -702 5452 11 1313 186 231 0 chr4 73001230 73001520 -111287142 + MSTD LTR MaLR 1 357 -39 279 128 0 0 chr4 73002538 73002577 -111286085 + MSTD LTR MaLR 411 449 -8 33 0 0 0 chr4 73002586 73002619 -111286043 + AT_rich Low_complexity Low_complexity 1 33 0 439 307 123 27 chr4 73002857 73003157 -111285505 - L2 LINE L2 -5 3308 2980 1377 180 39 5 chr4 73003332 73003641 -111285021 + L1MD1 LINE L1 5293 5610 -632 1919 175 3 0 chr4 73003641 73003950 -111284712 + AluJb SINE Alu 3 312 0 21916 45 3 0 chr4 73004068 73007387 -111281275 - L1PA4 LINE L1 0 6155 2824 366 23 0 0 chr4 73007387 73007430 -111281232 + (TTA)n Simple_repeat Simple_repeat 3 45 0 21916 45 3 0 chr4 73007430 73007444 -111281218 - L1PA4 LINE L1 -3331 2824 2812 1985 47 17 0 chr4 73007444 73007665 -111280997 - L1PA4 LINE L1 -18 6137 5899 22075 70 5 0 chr4 73007665 73010468 -111278194 - L1PA4 LINE L1 -3326 2820 4 1829 147 38 20 chr4 73010468 73010814 -111277848 + L1MD1 LINE L1 5581 5932 -310 280 111 83 56 chr4 73010869 73010941 -111277721 + L1MD2 LINE L1 6284 6357 -2 230 330 71 18 chr4 73011016 73011128 -111277534 + MIR3 SINE MIR 88 205 -3 180 77 0 0 chr4 73011521 73011547 -111277115 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 1727 253 56 68 chr4 73011703 73012291 -111276371 + MLT1G1 LTR MaLR 9 589 -6 772 217 94 17 chr4 73012307 73012487 -111276175 - LTR33 LTR ERVL -323 198 5 1119 279 8 0 chr4 73012691 73012949 -111275713 + MIR SINE MIR 3 262 0 920 270 132 34 chr4 73013366 73013814 -111274848 - LTR33 LTR ERVL -21 500 9 1140 316 67 23 chr4 73014007 73014440 -111274222 + MLT1K LTR MaLR 50 501 -87 1220 131 104 18 chr4 73015127 73015349 -111273313 - MER50 LTR ERV1 -12 722 482 1054 136 7 0 chr4 73015350 73015505 -111273157 - AluSx SINE Alu -8 304 149 1032 136 0 7 chr4 73015569 73015716 -111272946 - AluSx SINE Alu -167 146 1 2823 134 39 30 chr4 73015717 73016210 -111272452 - MER50 LTR ERV1 -237 497 1 9408 191 26 49 chr4 73016552 73018781 -111269881 - L1PA16 LINE L1 -9 6860 4609 823 110 14 7 chr4 73018781 73018913 -111269749 - MSTA LTR MaLR -227 137 1 9408 191 26 49 chr4 73018913 73020033 -111268629 - L1PA16 LINE L1 -2260 4609 3465 35494 77 8 94 chr4 73020035 73026775 -111261887 - L1PA5 LINE L1 0 6154 11 13779 161 26 9 chr4 73026784 73030103 -111258559 - L1PA16 LINE L1 -3371 3478 5 830 230 44 28 chr4 73030123 73030375 -111258287 + L1MA9 LINE L1 6027 6282 -30 26 0 0 0 chr4 73030508 73030534 -111258128 + AT_rich Low_complexity Low_complexity 1 26 0 3187 226 102 23 chr4 73030545 73031692 -111256970 + L1ME1 LINE L1 2253 3490 -2656 * 3444 227 85 15 chr4 73031686 73032898 -111255764 + L1ME1 LINE L1 4865 6162 -4 1274 174 82 31 chr4 73033049 73033342 -111255320 + AluJo SINE Alu 5 312 0 2306 294 58 19 chr4 73033681 73034651 -111254011 - HERV16 LTR ERVL -3251 1745 621 1941 162 10 0 chr4 73034651 73034941 -111253721 - AluSx SINE Alu -19 293 1 2306 294 58 19 chr4 73034941 73035222 -111253440 - HERV16 LTR ERVL -4375 621 352 319 305 19 0 chr4 73035323 73035428 -111253234 - HERV16 LTR ERVL -4793 203 97 1183 253 23 64 chr4 73035443 73035841 -111252821 - LTR16A LTR ERVL -5 451 65 189 0 0 0 chr4 73035879 73035900 -111252762 + (TG)n Simple_repeat Simple_repeat 1 21 0 2389 86 0 0 chr4 73035929 73036231 -111252431 + AluY SINE Alu 1 302 -9 218 213 0 0 chr4 73036333 73036380 -111252282 + T-rich Low_complexity Low_complexity 1 47 0 307 285 88 70 chr4 73036388 73036616 -111252046 - MIR SINE MIR -2 260 29 528 232 136 0 chr4 73037479 73037635 -111251027 + MER5A DNA MER1_type 4 183 -6 301 274 183 7 chr4 73037690 73037843 -111250819 - MIR SINE MIR -21 241 62 5651 129 119 85 chr4 73037995 73039231 -111249431 + pTR5 LTR ERV1 743 2020 -418 389 240 10 0 chr4 73039231 73039335 -111249327 + LTR30 LTR ERV1 539 643 -79 1409 114 14 9 chr4 73039337 73039557 -111249105 + pTR5 LTR ERV1 172 392 -2046 242 265 0 0 chr4 73039771 73039820 -111248842 + LTR16C LTR ERVL 443 491 0 691 190 9 0 chr4 73040283 73040399 -111248263 + MER45A DNA AcHobo 60 176 -2 697 289 60 8 chr4 73040794 73041029 -111247633 - MIR SINE MIR -1 261 15 22 0 0 0 chr4 73042845 73042867 -111245795 + AT_rich Low_complexity Low_complexity 1 22 0 1534 165 47 121 chr4 73043173 73043659 -111245003 + LTR7 LTR ERV1 1 450 0 2916 113 12 40 chr4 73043857 73044337 -111244325 + MER41B LTR ERV1 131 597 -38 2002 178 75 83 chr4 73044586 73045198 -111243464 + MER61B-int LTR ERV1 537 1143 -5533 831 153 16 0 chr4 73045243 73045367 -111243295 + MER61B-int LTR ERV1 1302 1427 -5249 7694 157 16 9 chr4 73045383 73046737 -111241925 + L1PA13 LINE L1 3968 5331 -815 238 146 122 0 chr4 73046737 73046778 -111241884 + AluSx SINE Alu 1 46 -257 6473 130 139 120 chr4 73046778 73048435 -111240227 + pTR5 LTR ERV1 750 2438 0 1914 135 0 0 chr4 73048438 73048704 -111239958 + AluSx SINE Alu 31 296 -16 6196 95 4 4 chr4 73048705 73049548 -111239114 + L1PA13 LINE L1 5321 6163 0 849 185 145 13 chr4 73049550 73049652 -111239010 + MER61B-int LTR ERV1 1252 1339 -6781 438 20 0 0 chr4 73049652 73049703 -111238959 + (TG)n Simple_repeat Simple_repeat 2 52 0 849 185 145 13 chr4 73049703 73049972 -111238690 + MER61B-int LTR ERV1 1339 1803 -6317 * 3926 187 60 36 chr4 73049967 73050967 -111237695 + MER61B-int LTR ERV1 870 2436 -3510 1747 88 8 8 chr4 73050995 73051245 -111237417 + MER61B-int LTR ERV1 1392 1641 -3576 * 13207 113 20 16 chr4 73051234 73051586 -111237076 + MER61B-int LTR ERV1 1983 2332 -2885 2669 92 16 13 chr4 73051586 73051966 -111236696 - L1PA6 LINE L1 0 6154 5774 13207 113 20 16 chr4 73051966 73054749 -111233913 + MER61B-int LTR ERV1 2332 5217 0 1850 122 28 25 chr4 73054749 73055089 -111233573 + MER61B LTR ERV1 1 425 0 657 277 116 46 chr4 73055117 73055445 -111233217 + MLT1J LTR MaLR 55 405 -106 802 231 6 6 chr4 73056377 73056546 -111232116 + L1PB4 LINE L1 5984 6152 -4 25 51 0 0 chr4 73056546 73056585 -111232077 + AT_rich Low_complexity Low_complexity 1 39 0 2388 100 0 0 chr4 73056610 73056919 -111231743 - AluSc SINE Alu 0 309 1 647 180 12 18 chr4 73056998 73057165 -111231497 + C-rich Low_complexity Low_complexity 3 168 0 1429 179 37 10 chr4 73057272 73057568 -111231094 + L1MB8 LINE L1 5872 6175 -3 358 291 103 0 chr4 73057671 73057788 -111230874 + Charlie8 DNA MER1_type 73 201 -2216 203 244 0 0 chr4 73057917 73057962 -111230700 - L2 LINE L2 -5 3308 3264 214 324 111 62 chr4 73058009 73058315 -111230347 + L2 LINE L2 1631 1951 -1363 252 214 0 0 chr4 73058546 73058588 -111230074 - L2 LINE L2 -84 3229 3188 418 288 128 62 chr4 73058783 73059141 -111229521 - L2 LINE L2 -353 2961 2580 256 377 94 19 chr4 73063627 73063786 -111224876 - L2 LINE L2 -13 3259 3089 484 283 131 25 chr4 73063881 73064079 -111224583 - MIR SINE MIR -28 234 16 3259 149 33 24 chr4 73065413 73065957 -111222705 + MER44D DNA MER2_type 1 604 -1 197 291 0 36 chr4 73065981 73066036 -111222626 + L2 LINE L2 3206 3258 -14 1604 166 8 0 chr4 73067176 73067435 -111221227 - AluSx SINE Alu -12 300 40 202 116 70 0 chr4 73067451 73067494 -111221168 + (TTA)n Simple_repeat Simple_repeat 2 47 0 2424 76 3 3 chr4 73067566 73067870 -111220792 + AluY SINE Alu 1 304 -7 406 290 53 41 chr4 73067872 73068041 -111220621 - MER5A DNA MER1_type -6 183 13 182 380 115 9 chr4 73068145 73068258 -111220404 + MIR SINE MIR 26 150 -112 2771 148 32 4 chr4 73068349 73068898 -111219764 + L1MA7 LINE L1 5610 6280 -11 22 35 0 0 chr4 73068898 73068927 -111219735 + AT_rich Low_complexity Low_complexity 1 29 0 336 250 25 75 chr4 73068928 73069048 -111219614 - LTR67 LTR ERVL -74 483 370 278 258 16 0 chr4 73070940 73071002 -111217660 - MER63 DNA MER1_type -274 788 726 1561 113 5 14 chr4 73071003 73071225 -111217437 + L1PA10 LINE L1 5948 6167 -1 511 226 29 0 chr4 73071268 73071370 -111217292 - MER63 DNA MER1_type -97 739 9 3065 165 22 49 chr4 73072571 73072798 -111215864 + L1MA9 LINE L1 5443 5675 -637 2442 99 0 0 chr4 73072798 73073110 -111215552 + AluSq SINE Alu 1 312 -1 3065 165 22 49 chr4 73073110 73073470 -111215192 + L1MA9 LINE L1 5675 6014 -298 2094 117 31 3 chr4 73075114 73075404 -111213258 - AluSq SINE Alu -15 298 1 2051 122 62 3 chr4 73075503 73075823 -111212839 + MER2 DNA MER2_type 7 345 0 637 305 128 45 chr4 73075937 73076498 -111212164 - L2 LINE L2 -436 2878 2271 570 134 21 0 chr4 73077594 73077691 -111210971 + L1MA10 LINE L1 6235 6333 -1 400 281 224 9 chr4 73078013 73078223 -111210439 - MIR SINE MIR -3 259 5 351 293 0 0 chr4 73078790 73078872 -111209790 - MER5A DNA MER1_type -104 85 4 322 348 108 23 chr4 73079491 73079844 -111208818 + L3 LINE CR1 810 1192 -385 229 70 70 0 chr4 73079969 73080012 -111208650 + (TGGA)n Simple_repeat Simple_repeat 4 49 0 400 333 51 0 chr4 73080111 73080267 -111208395 - MIR SINE MIR -13 249 86 458 352 92 10 chr4 73080320 73080732 -111207930 + LTR16A LTR ERVL 2 447 -3 224 259 0 0 chr4 73080736 73080794 -111207868 + L3 LINE CR1 1246 1303 -274 408 287 54 0 chr4 73080929 73081058 -111207604 + L3 LINE CR1 1345 1480 -97 254 368 68 0 chr4 73081715 73081832 -111206830 - L2 LINE L2 0 3313 3189 824 159 0 14 chr4 73083705 73083850 -111204812 - FLAM_C SINE Alu 0 143 1 2569 65 3 0 chr4 73084417 73084725 -111203937 + AluSp SINE Alu 1 309 -4 1705 141 37 34 chr4 73085533 73085860 -111202802 - AluJo SINE Alu 0 312 7 675 332 25 0 chr4 73086052 73086296 -111202366 + MIR SINE MIR 11 260 -2 1589 136 0 4 chr4 73088110 73088338 -111200324 - AluJb SINE Alu 0 312 86 183 139 0 0 chr4 73088858 73088894 -111199768 + (TTTTTA)n Simple_repeat Simple_repeat 6 41 0 792 158 25 0 chr4 73089220 73089340 -111199322 + AluJb SINE Alu 103 225 -87 301 308 13 0 chr4 73089340 73089418 -111199244 - MIR SINE MIR -182 80 2 320 283 124 9 chr4 73089446 73089559 -111199103 - MIR SINE MIR -135 127 2 369 0 0 0 chr4 73090032 73090073 -111198589 + (CA)n Simple_repeat Simple_repeat 2 42 0 872 168 91 77 chr4 73090390 73090598 -111198064 - MER2 DNA MER2_type -133 212 2 * 2234 214 83 80 chr4 73090598 73091314 -111197348 + MER21B LTR ERV1 21 738 -125 298 219 0 0 chr4 73091496 73091560 -111197102 - L1ME1 LINE L1 -5 6161 6098 2895 188 74 0 chr4 73091568 73092160 -111196502 - L1ME1 LINE L1 -176 5990 5355 626 321 86 33 chr4 73092226 73092940 -111195722 + L2 LINE L2 2285 3309 -4 509 281 164 22 chr4 73093466 73093697 -111194965 - LTR33 LTR ERVL -2 519 256 2620 42 0 6 chr4 73093800 73094113 -111194549 - AluY SINE Alu 0 311 1 451 279 16 8 chr4 73094377 73094499 -111194163 - MIR SINE MIR -128 134 12 195 69 0 0 chr4 73097552 73097581 -111191081 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 181 389 56 0 chr4 73097889 73097979 -111190683 + MIR3 SINE MIR 98 192 -16 318 253 0 36 chr4 73100208 73100291 -111188371 - MIR3 SINE MIR -10 198 119 367 283 18 0 chr4 73100412 73100525 -111188137 - LTR16C LTR ERVL 0 491 377 1120 259 98 22 chr4 73100529 73100938 -111187724 + LTR16A LTR ERVL 11 450 0 1830 271 35 26 chr4 73100938 73101285 -111187377 + HERV16 LTR ERVL 11 368 -4628 2262 142 37 3 chr4 73101285 73101638 -111187024 + MLT1A1 LTR MaLR 1 365 0 1830 271 35 26 chr4 73101638 73101913 -111186749 + HERV16 LTR ERVL 368 639 -4357 789 309 82 9 chr4 73101961 73102278 -111186384 + HERV16 LTR ERVL 729 1068 -3928 5731 146 31 38 chr4 73102311 73103292 -111185370 - L1MA7 LINE L1 0 7710 6726 1580 167 14 31 chr4 73103292 73103586 -111185076 - AluJo SINE Alu -23 289 1 5731 146 31 38 chr4 73103586 73104152 -111184510 - L1MA7 LINE L1 -984 6726 6158 14141 116 53 36 chr4 73104152 73104325 -111184337 - Tigger1 DNA MER2_type 0 2418 2249 2493 53 0 0 chr4 73104325 73104625 -111184037 + AluY SINE Alu 1 300 -11 14141 116 53 36 chr4 73104625 73106805 -111181857 - Tigger1 DNA MER2_type -169 2249 25 783 253 145 43 chr4 73106805 73107129 -111181533 - LTR18A LTR ERVL 0 357 1 14000 128 2 9 chr4 73107130 73109127 -111179535 - HERVL18 LTR ERVL 0 6047 4066 1997 152 0 3 chr4 73109128 73109417 -111179245 - HERVL18 LTR ERVL -1920 4127 3840 22699 166 19 9 chr4 73109424 73113096 -111175566 - HERVL18 LTR ERVL -2338 3709 2 823 267 142 19 chr4 73113103 73113421 -111175241 - LTR18A LTR ERVL 0 357 1 9194 179 45 22 chr4 73113448 73115448 -111173214 - L1MA7 LINE L1 -1404 6161 4118 877 232 56 88 chr4 73115629 73115872 -111172790 - L1MA7 LINE L1 -4147 3418 3196 1234 122 32 5 chr4 73115872 73116061 -111172601 - L1PB2 LINE L1 0 6151 5958 877 232 56 88 chr4 73116061 73116296 -111172366 - L1MA7 LINE L1 -4369 3196 2955 1410 276 91 35 chr4 73116297 73116951 -111171711 + HERV16 LTR ERVL 2346 3043 -1953 1263 260 48 46 chr4 73117572 73118006 -111170656 + LTR16A LTR ERVL 16 450 0 682 308 91 25 chr4 73118006 73118281 -111170381 - LTR16C LTR ERVL -110 381 89 254 355 51 0 chr4 73118779 73118917 -111169745 + MIR SINE MIR 49 193 -69 3190 125 78 0 chr4 73119325 73119886 -111168776 + L1MA1 LINE L1 2858 3462 -4103 16734 149 22 7 chr4 73119990 73124208 -111164454 + L1MA1 LINE L1 3433 7721 0 1845 142 23 39 chr4 73124219 73124528 -111164134 + AluSx SINE Alu 1 304 -8 211 356 11 0 chr4 73124987 73125077 -111163585 - L3 LINE CR1 -58 1519 1429 227 149 64 21 chr4 73125150 73125197 -111163465 + LTR13 LTR ERVK 661 709 -298 1151 183 46 17 chr4 73125204 73125556 -111163106 - MLT2B1 LTR ERVL -42 478 1 375 179 51 0 chr4 73125559 73125637 -111163025 + LTR16A LTR ERVL 249 330 -120 1640 162 24 87 chr4 73125724 73126094 -111162568 + MLT2C1 LTR ERVL 1 347 -50 300 290 117 78 chr4 73126097 73126294 -111162368 - L2 LINE L2 -1420 1894 1706 234 0 0 0 chr4 73126294 73126320 -111162342 + (TG)n Simple_repeat Simple_repeat 2 27 0 300 290 117 78 chr4 73126320 73126611 -111162051 - L2 LINE L2 -1608 1706 1387 201 74 0 0 chr4 73126893 73126920 -111161742 + (T)n Simple_repeat Simple_repeat 1 27 0 2126 108 11 0 chr4 73127191 73127477 -111161185 + AluSq SINE Alu 9 297 -16 189 289 30 96 chr4 73127646 73127781 -111160881 - L2 LINE L2 -1862 1452 1327 237 350 58 15 chr4 73127792 73127929 -111160733 + MIR3 SINE MIR 36 178 -30 387 313 30 0 chr4 73128620 73128751 -111159911 - HAL1b LINE L1 -705 643 509 345 302 60 66 chr4 73129567 73129749 -111158913 - MIR3 SINE MIR -10 198 18 32713 106 14 52 chr4 73130231 73136619 -111152043 + L1PA7 LINE L1 12 6147 -7 572 258 82 26 chr4 73136800 73136948 -111151714 + MIR SINE MIR 58 221 -41 1445 190 31 28 chr4 73136948 73137237 -111151425 + AluJo SINE Alu 5 294 -18 572 258 82 26 chr4 73137237 73137282 -111151380 + MIR SINE MIR 221 262 0 353 306 0 0 chr4 73137678 73137750 -111150912 - MIR SINE MIR -106 102 31 303 301 48 0 chr4 73137932 73138015 -111150647 + MIR SINE MIR 24 110 -152 2908 10 0 0 chr4 73139158 73139471 -111149191 + AluYb8 SINE Alu 1 313 -5 186 43 0 0 chr4 73140715 73140738 -111147924 + (CATA)n Simple_repeat Simple_repeat 2 24 0 2052 149 0 3 chr4 73141073 73141374 -111147288 - AluSx SINE Alu -12 300 1 22 56 0 0 chr4 73141491 73141527 -111147135 + AT_rich Low_complexity Low_complexity 1 36 0 1492 48 0 43 chr4 73141995 73142183 -111146479 + L1PA6 LINE L1 5970 6149 -5 41 21 0 0 chr4 73142183 73142231 -111146431 + AT_rich Low_complexity Low_complexity 1 48 0 2402 69 0 10 chr4 73142324 73142630 -111146032 - AluY SINE Alu -8 303 1 290 336 37 0 chr4 73143427 73143561 -111145101 + LTR67 LTR ERVL 417 555 -2 2387 112 0 0 chr4 73143990 73144302 -111144360 - AluSx SINE Alu 0 312 1 909 250 49 47 chr4 73144347 73144660 -111144002 - MLT1E-int LTR MaLR -766 605 189 2846 166 30 22 chr4 73144660 73144734 -111143928 - L1MB3 LINE L1 -7 6176 6104 2255 72 20 7 chr4 73144734 73145027 -111143635 - AluY SINE Alu -14 297 1 2846 166 30 22 chr4 73145027 73145487 -111143175 - L1MB3 LINE L1 -79 6104 5638 909 250 49 47 chr4 73145487 73145676 -111142986 - MLT1E-int LTR MaLR -1182 189 2 1765 276 55 38 chr4 73145677 73145978 -111142684 - MLT1E LTR MaLR 0 593 276 2359 201 35 65 chr4 73145978 73146609 -111142053 + LTR9 LTR ERV1 1 612 0 1765 276 55 38 chr4 73146609 73146886 -111141776 - MLT1E LTR MaLR -317 276 5 507 250 16 8 chr4 73146949 73147073 -111141589 - MIR SINE MIR -10 252 128 226 121 0 0 chr4 73147073 73147106 -111141556 - Alu SINE Alu -269 33 1 229 236 69 0 chr4 73147369 73147441 -111141221 - L1ME LINE L1 -227 5894 5818 1755 210 35 46 chr4 73147905 73148448 -111140214 - L1ME2 LINE L1 -290 5874 5338 599 279 99 50 chr4 73148649 73149032 -111139630 - MLT1J LTR MaLR -71 440 39 272 258 60 47 chr4 73149106 73149339 -111139323 - L1MC5 LINE L1 -205 7756 7521 500 282 108 17 chr4 73149443 73149787 -111138875 + L1MC5 LINE L1 7501 7875 -86 24 32 0 0 chr4 73149804 73149835 -111138827 + AT_rich Low_complexity Low_complexity 1 31 0 2350 96 3 0 chr4 73149869 73150172 -111138490 - AluSp SINE Alu -9 304 1 192 77 0 0 chr4 73150590 73150616 -111138046 + (TTC)n Simple_repeat Simple_repeat 2 27 0 1955 135 13 13 chr4 73150689 73151001 -111137661 + AluSx SINE Alu 1 312 0 450 313 69 11 chr4 73151117 73151467 -111137195 + MLT1I LTR MaLR 75 402 -7 668 316 32 34 chr4 73152777 73153198 -111135464 + LTR33 LTR ERVL 38 521 0 542 225 308 0 chr4 73153369 73153538 -111135124 + MIR SINE MIR 2 222 -40 200 237 85 17 chr4 73153546 73153605 -111135057 + L2 LINE L2 3232 3294 -19 21 0 0 0 chr4 73155002 73155023 -111133639 + AT_rich Low_complexity Low_complexity 1 21 0 1639 211 3 3 chr4 73155120 73155423 -111133239 - AluJb SINE Alu -9 303 1 843 288 90 32 chr4 73155423 73156003 -111132659 - L1ME2 LINE L1 -266 5898 5285 396 248 72 65 chr4 73155725 73156090 -111132572 - L1PA8A LINE L1 -560 5571 5189 * 485 228 39 8 chr4 73157219 73157346 -111131316 + MER103 DNA DNA 2 132 -34 * 4274 125 25 34 chr4 73157341 73158068 -111130594 - MER50 LTR ERV1 -14 720 1 315 0 0 0 chr4 73159817 73159852 -111128810 + (CA)n Simple_repeat Simple_repeat 2 36 0 3023 154 45 65 chr4 73160603 73161322 -111127340 + L1MB7 LINE L1 5271 5974 -210 * 7651 26 1 2 chr4 73161310 73162216 -111126446 - L1PA3 LINE L1 -907 5239 4333 7348 31 2 11 chr4 73162216 73163196 -111125466 + L1PA3 LINE L1 5219 6155 0 867 235 34 0 chr4 73163196 73163400 -111125262 + L1MB7 LINE L1 5963 6173 -11 944 246 14 14 chr4 73163815 73164030 -111124632 - MER58A DNA MER1_type 0 224 10 713 234 5 20 chr4 73164651 73164852 -111123810 + Charlie5 DNA MER1_type 2 199 -2413 * 1197 128 128 0 chr4 73164851 73165093 -111123569 + Charlie5 DNA MER1_type 2352 2624 0 2418 171 78 29 chr4 73166356 73166934 -111121728 + L1MC2 LINE L1 6137 7725 -21 395 319 0 35 chr4 73167719 73167835 -111120827 - L2 LINE L2 -7 3306 3195 313 196 0 0 chr4 73168997 73169053 -111119609 + L1ME3A LINE L1 5577 5632 -538 4349 147 34 42 chr4 73169068 73169582 -111119080 - L1MA7 LINE L1 -10 6281 5776 1684 183 7 20 chr4 73169582 73169888 -111118774 - AluJo SINE Alu -10 302 1 4349 147 34 42 chr4 73169888 73170279 -111118383 - L1MA7 LINE L1 -515 5776 5383 571 203 6 5 chr4 73170282 73170440 -111118222 + MER8 DNA MER2_type 1 239 0 295 0 0 0 chr4 73170443 73170477 -111118185 - L1MA7 LINE L1 -924 5379 5346 1525 239 122 24 chr4 73170479 73170973 -111117689 + L1ME3A LINE L1 5617 6158 -12 22 35 0 0 chr4 73171593 73171622 -111117040 + AT_rich Low_complexity Low_complexity 1 29 0 232 356 100 30 chr4 73171915 73172145 -111116517 - L2 LINE L2 -441 2873 2628 232 320 13 0 chr4 73172267 73172342 -111116320 + MIR SINE MIR 181 256 -6 669 256 111 71 chr4 73172477 73172856 -111115806 + L1ME3A LINE L1 5546 5939 -231 186 259 52 0 chr4 73173352 73173410 -111115252 + MIR SINE MIR 72 132 -76 396 211 98 68 chr4 73173566 73173699 -111114963 - MIR SINE MIR -111 151 15 643 200 31 0 chr4 73173767 73173897 -111114765 + MER94 DNA DNA 1 134 0 477 266 85 30 chr4 73174382 73174570 -111114092 - MIR SINE MIR -59 203 6 2025 125 40 0 chr4 73174690 73174987 -111113675 + AluSx SINE Alu 1 309 -3 307 255 145 63 chr4 73176064 73176319 -111112343 + L1ME4a LINE L1 5622 5897 -224 189 344 0 16 chr4 73179002 73179063 -111109599 + L3 LINE CR1 1293 1352 -225 224 194 65 65 chr4 73179067 73179129 -111109533 - L3 LINE CR1 -288 1289 1228 256 301 81 17 chr4 73180753 73180926 -111107736 + L1ME LINE L1 5612 5795 -326 23 33 0 0 chr4 73181347 73181377 -111107285 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr4 73181425 73181449 -111107213 + AT_rich Low_complexity Low_complexity 1 24 0 1184 223 3 0 chr4 73181499 73181782 -111106880 - AluSq SINE Alu 0 313 30 2205 94 3 10 chr4 73182481 73182778 -111105884 + AluSp SINE Alu 1 295 -18 1049 82 0 0 chr4 73182865 73182999 -111105663 + AluY SINE Alu 174 307 -4 1932 117 46 0 chr4 73183125 73183406 -111105256 + AluSx SINE Alu 5 298 -14 2187 113 7 7 chr4 73183798 73184099 -111104563 + AluSx SINE Alu 1 301 -11 824 249 0 5 chr4 73184146 73184331 -111104331 - AluSp SINE Alu -30 283 100 2052 86 26 59 chr4 73185145 73185448 -111103214 + AluSp SINE Alu 2 294 -19 1591 90 33 0 chr4 73186345 73186556 -111102106 - AluSp SINE Alu -19 294 77 2133 81 0 11 chr4 73186744 73187055 -111101607 + AluY SINE Alu 1 308 0 27 29 0 0 chr4 73187275 73187309 -111101353 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr4 73187776 73187798 -111100864 + AT_rich Low_complexity Low_complexity 1 22 0 1151 167 69 5 chr4 73189099 73189303 -111099359 + MER20 DNA MER1_type 2 218 -1 2045 164 50 12 chr4 73189518 73189940 -111098722 - L1MD3 LINE L1 -1 7994 7557 359 278 32 16 chr4 73191122 73191248 -111097414 + MLT1L LTR MaLR 480 607 -8 577 231 31 0 chr4 73191249 73191379 -111097283 - MER94 DNA DNA 0 134 1 329 195 39 52 chr4 73191392 73191469 -111097193 - Tigger3(Golem) DNA MER2_type -1 3028 2953 935 69 0 61 chr4 73192507 73192638 -111096024 - AluSg/x SINE Alu -19 291 169 552 221 30 8 chr4 73193867 73193998 -111094664 + L1MC/D LINE L1 5389 5522 -2286 1562 260 92 65 chr4 73194132 73194826 -111093836 - L1ME2 LINE L1 -224 5940 5267 450 0 0 0 chr4 73194826 73194876 -111093786 + (TA)n Simple_repeat Simple_repeat 2 51 0 2029 95 3 18 chr4 73194879 73195164 -111093498 - AluSx SINE Alu -31 281 1 1562 260 92 65 chr4 73195164 73195346 -111093316 - L1ME2 LINE L1 -898 5266 5090 2218 118 0 3 chr4 73195346 73195651 -111093011 - AluSx SINE Alu -8 304 1 1562 260 92 65 chr4 73195651 73196252 -111092410 - L1ME2 LINE L1 -1074 5090 4507 2266 96 6 10 chr4 73196252 73196566 -111092096 - AluSq SINE Alu 0 313 1 1562 260 92 65 chr4 73196566 73197120 -111091542 - L1ME2 LINE L1 -1657 4507 3847 183 80 0 0 chr4 73197120 73197145 -111091517 + (CATATA)n Simple_repeat Simple_repeat 2 26 0 1562 260 92 65 chr4 73197145 73197209 -111091453 - L1ME2 LINE L1 -2317 3847 3786 792 155 0 0 chr4 73197240 73197369 -111091293 - LTR40b LTR ERVL 0 462 334 385 309 94 28 chr4 73197690 73197978 -111090684 - L1ME2 LINE L1 -2400 3746 3440 3207 93 7 0 chr4 73197978 73198441 -111090221 - MER41A LTR ERV1 -88 466 1 1459 116 5 0 chr4 73198441 73198657 -111090005 - MER41A-int LTR ERV1 -2 5944 5728 321 179 32 74 chr4 73198652 73198747 -111089915 - MER41B-int LTR ERV1 -5855 91 1 * 705 133 98 14 chr4 73198747 73198890 -111089772 - MER41B LTR ERV1 0 635 481 995 267 90 30 chr4 73199309 73200177 -111088485 - L1ME2 LINE L1 -3096 3050 2131 706 252 126 3 chr4 73200385 73200679 -111087983 - L1ME2 LINE L1 -2 6660 6331 265 130 0 37 chr4 73200677 73200731 -111087931 + L1M4 LINE L1 5771 5822 -356 * 1971 245 83 25 chr4 73200739 73201790 -111086872 - L1ME2 LINE L1 -1096 5548 4416 372 240 6 95 chr4 73201811 73201990 -111086672 - L1ME2 LINE L1 -2536 4108 3946 303 170 0 191 chr4 73202068 73202215 -111086447 - L1ME2 LINE L1 -6420 122 4 * 987 242 133 61 chr4 73202212 73202332 -111086330 - L1MEd LINE L1 -2693 3436 3326 1698 116 0 72 chr4 73202332 73202609 -111086053 + AluY SINE Alu 1 257 -54 987 242 133 61 chr4 73202609 73202962 -111085700 - L1MEd LINE L1 -2803 3326 3000 1734 171 3 10 chr4 73202962 73203255 -111085407 - AluJo SINE Alu -19 293 3 987 242 133 61 chr4 73203255 73203643 -111085019 - L1MEd LINE L1 -3129 3000 2512 2461 73 0 0 chr4 73203761 73204064 -111084598 - AluY SINE Alu -8 303 1 246 125 21 0 chr4 73204269 73204317 -111084345 - L1MCb LINE L1 -5176 731 683 * 351 157 57 0 chr4 73204313 73204383 -111084279 - L1MCb LINE L1 -5672 754 681 1207 251 193 3 chr4 73204423 73204806 -111083856 - L1MCb LINE L1 -5835 591 136 361 256 87 26 chr4 73204861 73205056 -111083606 - L1MEd LINE L1 -4966 1153 947 509 260 19 0 chr4 73205071 73205225 -111083437 - L1ME2 LINE L1 -12 6152 5996 262 228 67 121 chr4 73205224 73205348 -111083314 - L1ME2 LINE L1 -573 5591 5475 * 1940 136 11 3 chr4 73205348 73205635 -111083027 + AluSx SINE Alu 1 289 -23 262 228 67 121 chr4 73205635 73205659 -111083003 - L1ME2 LINE L1 -689 5475 5451 181 293 0 0 chr4 73206642 73206683 -111081979 - L2 LINE L2 -18 3254 3214 264 361 83 0 chr4 73206732 73206840 -111081822 - MIR SINE MIR -61 147 31 2108 107 0 52 chr4 73207055 73207383 -111081279 + AluSx SINE Alu 1 311 -1 1574 88 114 4 chr4 73207833 73208060 -111080602 + AluSc SINE Alu 1 252 -57 256 343 130 12 chr4 73209966 73210135 -111078527 - MIR3 SINE MIR -1 207 19 241 184 0 0 chr4 73210415 73210453 -111078209 - MER58 DNA MER1_type -172 43 6 1161 269 66 42 chr4 73211022 73211479 -111077183 - LTR33 LTR ERVL -48 473 6 283 308 13 13 chr4 73212064 73212142 -111076520 + MIR SINE MIR 29 106 -156 959 81 29 7 chr4 73212152 73212288 -111076374 - AluSp/q SINE Alu 0 313 175 2217 94 3 10 chr4 73212375 73212672 -111075990 - AluSp SINE Alu -18 295 1 387 342 34 20 chr4 73213280 73213429 -111075233 + L2 LINE L2 3121 3271 -1 419 269 101 117 chr4 73215122 73215694 -111072968 + L1M2 LINE L1 580 1142 -5707 361 327 67 79 chr4 73215660 73216142 -111072520 - L1M2 LINE L1 -5446 1403 932 * 234 0 0 0 chr4 73216142 73216168 -111072494 + (TG)n Simple_repeat Simple_repeat 2 27 0 361 327 67 79 chr4 73216168 73216422 -111072240 - L1M2 LINE L1 -5917 932 676 341 332 99 43 chr4 73216295 73216617 -111072045 + L1M2 LINE L1 867 1206 -5643 * 300 289 178 40 chr4 73217527 73217752 -111070910 + MIR SINE MIR 1 256 -6 25 51 0 0 chr4 73218919 73218958 -111069704 + AT_rich Low_complexity Low_complexity 1 39 0 325 207 55 69 chr4 73219323 73219468 -111069194 - MLT1J2 LTR MaLR -65 385 243 3504 218 54 73 chr4 73220817 73222759 -111065903 - L1MB8 LINE L1 0 6178 4290 2156 118 17 0 chr4 73222759 73223055 -111065607 - AluSg SINE Alu -9 301 1 3504 218 54 73 chr4 73223055 73223329 -111065333 - L1MB8 LINE L1 -1888 4290 4012 238 222 69 0 chr4 73223398 73223470 -111065192 - L1MB8 LINE L1 -2117 4029 3953 1929 84 64 61 chr4 73223654 73223950 -111064712 - AluSg SINE Alu -13 297 1 3065 95 19 41 chr4 73224189 73224705 -111063957 + L1MA5A LINE L1 5789 6293 -4 28 0 0 0 chr4 73224999 73225027 -111063635 + AT_rich Low_complexity Low_complexity 1 28 0 232 270 34 34 chr4 73225946 73226035 -111062627 - MIR SINE MIR -55 207 119 * 684 219 73 0 chr4 73226032 73226196 -111062466 + MIR SINE MIR 56 231 -31 212 365 7 35 chr4 73226514 73226659 -111062003 + L2 LINE L2 2608 2748 -566 2368 93 6 10 chr4 73226725 73227038 -111061624 - AluSx SINE Alu 0 312 1 379 181 52 43 chr4 73227040 73227156 -111061506 - MER58C DNA MER1_type -9 206 90 250 107 0 10 chr4 73227155 73227213 -111061449 - MER58 DNA MER1_type -107 108 67 * 408 263 143 0 chr4 73227249 73227395 -111061267 - MIR SINE MIR -43 219 57 219 359 47 23 chr4 73227436 73227564 -111061098 + L2 LINE L2 2750 2880 -434 381 221 0 12 chr4 73227826 73227912 -111060750 - FLAM_A SINE Alu -6 127 43 1354 79 0 0 chr4 73227924 73228089 -111060573 - AluSc SINE Alu -13 296 132 645 102 0 0 chr4 73228089 73228177 -111060485 + AluY SINE Alu 47 134 -177 210 300 0 0 chr4 73228247 73228307 -111060355 + L2 LINE L2 3213 3272 0 199 301 35 44 chr4 73228425 73228538 -111060124 - L2 LINE L2 -453 2861 2750 2365 81 3 3 chr4 73228779 73229075 -111059587 - AluSp SINE Alu -17 296 1 1290 233 133 4 chr4 73229395 73229845 -111058817 - Charlie4a DNA MER1_type 0 508 1 943 225 84 0 chr4 73230056 73230269 -111058393 + MER8 DNA MER2_type 1 231 -8 1788 182 163 15 chr4 73230459 73230775 -111057887 - L1MB5 LINE L1 -21 6153 5885 2189 114 0 3 chr4 73230775 73231073 -111057589 - AluSx SINE Alu -15 297 1 1788 182 163 15 chr4 73231073 73231290 -111057372 - L1MB5 LINE L1 -289 5885 5541 2138 114 7 0 chr4 73231299 73231597 -111057065 - AluSp SINE Alu -13 300 1 509 288 95 17 chr4 73231599 73231894 -111056768 - L1MC4a LINE L1 -1983 5825 5508 448 281 103 63 chr4 73231911 73232329 -111056333 - L1MC4a LINE L1 -693 5477 5041 448 329 62 22 chr4 73232359 73232584 -111056078 + MIR SINE MIR 19 252 -10 783 199 6 45 chr4 73233306 73233462 -111055200 - FAM SINE Alu -22 163 14 1456 158 35 76 chr4 73234682 73234999 -111053663 - AluJo SINE Alu -8 304 1 2306 108 3 0 chr4 73235495 73235792 -111052870 - AluSq SINE Alu -11 302 5 1377 180 65 0 chr4 73235828 73236073 -111052589 - AluJo SINE Alu -51 261 1 1574 193 100 29 chr4 73236082 73236225 -111052437 - L1ME LINE L1 -432 5734 5603 1624 186 24 3 chr4 73236225 73236516 -111052146 - AluJb SINE Alu -15 297 1 1574 193 100 29 chr4 73236516 73236876 -111051786 - L1ME LINE L1 -563 5603 5173 1614 154 67 30 chr4 73236876 73237175 -111051487 - AluJo SINE Alu -2 310 1 1574 193 100 29 chr4 73237175 73237374 -111051288 - L1ME LINE L1 -993 5173 4990 380 149 0 45 chr4 73237380 73237447 -111051215 - Tigger7 DNA MER2_type -1 2486 2423 2667 166 36 4 chr4 73237453 73237947 -111050715 - Tigger7 DNA MER2_type -213 520 11 2692 207 62 107 chr4 73237978 73238092 -111050570 - L1ME LINE L1 -1162 4984 4866 1652 140 18 85 chr4 73238092 73238420 -111050242 - AluJb SINE Alu -5 307 2 2692 207 62 107 chr4 73238420 73238566 -111050096 - L1ME LINE L1 -1280 4866 4715 1692 143 162 19 chr4 73238566 73238937 -111049725 - MSTA LTR MaLR -4 424 1 2692 207 62 107 chr4 73238937 73239065 -111049597 - L1ME LINE L1 -1431 4715 4583 998 133 7 0 chr4 73239065 73239215 -111049447 + L1PA16 LINE L1 6007 6157 -9 2692 207 62 107 chr4 73239215 73239430 -111049232 - L1ME LINE L1 -1563 4583 4360 1809 142 129 43 chr4 73239430 73239824 -111048838 - MSTA LTR MaLR 0 428 1 2692 207 62 107 chr4 73239824 73239901 -111048761 - L1ME LINE L1 -1786 4360 4281 2343 89 10 0 chr4 73239901 73240204 -111048458 + AluSp SINE Alu 1 306 -7 2692 207 62 107 chr4 73240204 73240928 -111047734 - L1ME LINE L1 -1865 4281 3639 2234 110 3 3 chr4 73241043 73241351 -111047311 - AluSx SINE Alu -4 308 1 533 279 142 10 chr4 73241679 73241883 -111046779 + MIR SINE MIR 28 258 -4 1055 199 14 27 chr4 73242144 73242365 -111046297 - MER20 DNA MER1_type 0 219 2 2262 117 7 0 chr4 73242475 73242774 -111045888 - AluSx SINE Alu -11 301 1 204 67 0 0 chr4 73243908 73243938 -111044724 + (ATG)n Simple_repeat Simple_repeat 2 31 0 1913 144 7 0 chr4 73243940 73244224 -111044438 - AluSx SINE Alu -26 286 1 1281 105 205 70 chr4 73244257 73244515 -111044147 + AluSg SINE Alu 1 293 -7 23 0 0 0 chr4 73244558 73244581 -111044081 + AT_rich Low_complexity Low_complexity 1 23 0 3807 113 15 7 chr4 73244588 73245190 -111043472 + L1MC1 LINE L1 5429 6035 -298 1908 173 16 0 chr4 73245244 73245551 -111043111 - AluJb SINE Alu 0 312 1 1548 132 70 0 chr4 73245551 73245793 -111042869 - AluJo SINE Alu -20 292 33 25 0 0 0 chr4 73246460 73246485 -111042177 + AT_rich Low_complexity Low_complexity 1 25 0 2010 132 3 3 chr4 73246486 73246774 -111041888 - AluSx SINE Alu -24 288 1 333 306 128 36 chr4 73247301 73247497 -111041165 + MIR SINE MIR 49 262 0 2148 77 11 3 chr4 73247926 73248236 -111040426 - AluSq SINE Alu 0 312 1 21 0 0 31 chr4 73248427 73248446 -111040216 + AT_rich Low_complexity Low_complexity 1 20 -11 1649 196 7 10 chr4 73248446 73248737 -111039925 + AluJb SINE Alu 1 290 -22 21 0 0 31 chr4 73248737 73248749 -111039913 + AT_rich Low_complexity Low_complexity 20 31 0 705 150 0 79 chr4 73248753 73248893 -111039769 - FLAM_C SINE Alu -3 130 2 2049 131 3 0 chr4 73248928 73249225 -111039437 - AluSx SINE Alu -14 298 1 206 277 27 122 chr4 73249227 73249375 -111039287 + L2 LINE L2 2914 3047 -225 2158 220 71 9 chr4 73249459 73250299 -111038363 - L1ME LINE L1 -656 5510 4620 1763 141 57 7 chr4 73250440 73250723 -111037939 + AluJb SINE Alu 1 297 -15 58 0 0 0 chr4 73251294 73251352 -111037310 + AT_rich Low_complexity Low_complexity 1 58 0 405 283 0 33 chr4 73251845 73251965 -111036697 + L2 LINE L2 3195 3310 -3 180 0 0 0 chr4 73252053 73252073 -111036589 + (T)n Simple_repeat Simple_repeat 1 20 0 811 149 8 15 chr4 73252446 73252580 -111036082 + FLAM_A SINE Alu 1 133 0 1667 186 0 29 chr4 73252582 73252893 -111035769 + AluJo SINE Alu 1 302 -10 24 32 0 0 chr4 73253835 73253866 -111034796 + AT_rich Low_complexity Low_complexity 1 31 0 2819 63 0 8 chr4 73253867 73254232 -111034430 - L1PA8 LINE L1 -7 6165 5804 893 230 0 0 chr4 73254233 73254407 -111034255 - FAM SINE Alu -1 174 1 2248 66 0 14 chr4 73255258 73255545 -111033117 - AluY SINE Alu -28 283 1 21 57 0 0 chr4 73255800 73255835 -111032827 + AT_rich Low_complexity Low_complexity 1 35 0 252 244 109 76 chr4 73255975 73256094 -111032568 - L2 LINE L2 -6 3307 3185 2508 52 7 10 chr4 73256150 73256459 -111032203 - AluY SINE Alu -3 308 1 264 85 43 21 chr4 73256492 73256539 -111032123 + Alu SINE Alu 1 48 -254 * 306 103 17 52 chr4 73256534 73256592 -111032070 + AluJ/FLAM SINE Alu 19 74 -228 1590 129 0 9 chr4 73256698 73256931 -111031731 + AluSg/x SINE Alu 82 312 0 1447 165 60 23 chr4 73256938 73257204 -111031458 + AluJb SINE Alu 5 280 -32 207 100 0 0 chr4 73257208 73257238 -111031424 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 588 215 126 0 chr4 73257240 73257375 -111031287 + FRAM SINE Alu 1 152 -14 593 250 133 15 chr4 73257476 73257672 -111030990 - MIR SINE MIR -11 251 33 1509 207 31 11 chr4 73257975 73258357 -111030305 + L1M4 LINE L1 4891 5280 -866 1900 165 7 0 chr4 73258437 73258728 -111029934 + AluJo SINE Alu 1 293 -19 705 248 38 53 chr4 73258749 73259015 -111029647 - MIR SINE MIR 0 262 1 845 195 23 17 chr4 73259494 73259668 -111028994 - MER5A DNA MER1_type -14 175 1 275 286 10 0 chr4 73261295 73261393 -111027269 + CT-rich Low_complexity Low_complexity 1 99 0 253 213 0 0 chr4 73262135 73262182 -111026480 - L2 LINE L2 0 3272 3226 2295 101 0 0 chr4 73262345 73262641 -111026021 + AluSg SINE Alu 1 296 -14 2119 82 69 10 chr4 73262748 73263039 -111025623 - AluSp SINE Alu -5 308 1 21 57 0 0 chr4 73263039 73263074 -111025588 + AT_rich Low_complexity Low_complexity 1 35 0 228 237 26 0 chr4 73263108 73263184 -111025478 - L1ME4a LINE L1 -83 6038 5961 183 42 0 0 chr4 73263622 73263646 -111025016 + (TTG)n Simple_repeat Simple_repeat 1 24 0 476 120 141 11 chr4 73263658 73263750 -111024912 - AluJ SINE Alu -39 273 170 523 130 13 0 chr4 73263757 73263834 -111024828 + AluSp SINE Alu 103 180 -133 1098 169 0 12 chr4 73263834 73264006 -111024656 - AluJ SINE Alu -142 170 1 187 267 22 0 chr4 73264076 73264121 -111024541 - L2 LINE L2 0 3313 3268 407 299 24 24 chr4 73264142 73264269 -111024393 - MIR3 SINE MIR -37 171 45 2357 90 0 0 chr4 73264816 73265106 -111023556 + AluSg SINE Alu 1 290 -20 28 22 0 22 chr4 73265106 73265124 -111023538 + AT_rich Low_complexity Low_complexity 1 18 -27 1509 187 21 28 chr4 73265124 73265413 -111023249 + AluJb SINE Alu 1 287 -25 28 22 0 22 chr4 73265413 73265440 -111023222 + AT_rich Low_complexity Low_complexity 18 45 0 2191 117 0 10 chr4 73265843 73266150 -111022512 - AluSx SINE Alu -8 304 1 1111 163 0 0 chr4 73266254 73266420 -111022242 - FRAM SINE Alu -10 166 1 332 273 43 80 chr4 73266633 73266820 -111021842 + MIR SINE MIR 41 220 -42 23 78 0 0 chr4 73266848 73266899 -111021763 + AT_rich Low_complexity Low_complexity 1 51 0 1507 187 73 4 chr4 73267053 73267172 -111021490 + AluJb SINE Alu 1 110 -202 308 23 45 0 chr4 73267172 73267216 -111021446 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 1507 187 73 4 chr4 73267216 73267369 -111021293 + AluJb SINE Alu 110 292 -20 456 260 40 40 chr4 73267923 73268073 -111020589 + L2 LINE L2 3122 3271 -1 216 235 176 0 chr4 73268161 73268229 -111020433 - L2 LINE L2 0 3313 3234 2443 86 0 0 chr4 73269248 73269551 -111019111 - AluSg SINE Alu -7 303 1 240 345 56 14 chr4 73269561 73269703 -111018959 - MIR SINE MIR -15 247 100 218 366 76 8 chr4 73269799 73269930 -111018732 - L2 LINE L2 -1 3312 3173 247 321 196 9 chr4 73270410 73270522 -111018140 + MIR SINE MIR 2 134 -128 236 261 0 29 chr4 73270540 73270609 -111018053 + MER20B DNA MER1_type 458 524 -259 1697 219 98 48 chr4 73270887 73271121 -111017541 + MER20B DNA MER1_type 33 254 -529 2448 79 3 0 chr4 73271121 73271426 -111017236 - AluSp SINE Alu -7 306 1 1697 219 98 48 chr4 73271426 73271903 -111016759 + MER20B DNA MER1_type 254 780 -3 2263 104 14 0 chr4 73271969 73272266 -111016396 - AluSx SINE Alu -11 301 1 238 303 0 0 chr4 73272739 73272805 -111015857 + MER103 DNA DNA 99 164 -2 2054 111 0 0 chr4 73273751 73274021 -111014641 + AluSx SINE Alu 1 270 -42 205 152 0 0 chr4 73274430 73274463 -111014199 + GA-rich Low_complexity Low_complexity 2 34 0 277 292 46 0 chr4 73274993 73275058 -111013604 - MER91A DNA MER1_type -122 74 7 602 235 59 44 chr4 73275058 73275262 -111013400 + MLT1J LTR MaLR 282 488 -23 491 309 128 77 chr4 73275826 73276656 -111012006 - L2 LINE L2 -219 3053 2177 398 265 152 40 chr4 73276867 73277018 -111011644 + MIR3 SINE MIR 5 172 -36 1729 165 25 3 chr4 73277793 73278114 -111010548 + MER2 DNA MER2_type 2 329 -16 1512 198 26 23 chr4 73281112 73281420 -111007242 + AluJo SINE Alu 4 312 0 1561 163 0 33 chr4 73281692 73281968 -111006694 + AluSx SINE Alu 1 267 -45 23 0 0 0 chr4 73282289 73282312 -111006350 + AT_rich Low_complexity Low_complexity 1 23 0 881 160 0 0 chr4 73283398 73283529 -111005133 + FLAM_C SINE Alu 1 131 -2 1346 118 45 64 chr4 73283553 73283773 -111004889 + AluJb SINE Alu 80 295 -17 1926 156 0 3 chr4 73283777 73284078 -111004584 + AluJo SINE Alu 1 300 -12 681 257 118 0 chr4 73284295 73284482 -111004180 - MER63A DNA MER1_type 0 210 2 345 271 0 0 chr4 73285278 73285363 -111003299 + MIR SINE MIR 177 261 -1 288 188 0 62 chr4 73285897 73285977 -111002685 - MER116 DNA Mariner 0 80 6 449 254 110 0 chr4 73286577 73286695 -111001967 - MIR SINE MIR -7 255 125 2068 109 10 26 chr4 73286698 73287000 -111001662 + AluSx SINE Alu 1 297 -15 570 213 64 7 chr4 73287094 73287235 -111001427 - MIR SINE MIR -16 246 98 257 269 21 21 chr4 73287267 73287360 -111001302 + ERVL LTR ERVL 3077 3169 -2485 2366 100 3 0 chr4 73287736 73288046 -111000616 + AluSq SINE Alu 1 311 -2 512 267 10 64 chr4 73288176 73288378 -111000284 + LTR16A LTR ERVL 119 309 -141 1063 252 32 96 chr4 73288528 73288695 -110999967 + LTR33A LTR ERVL 62 238 -285 2293 79 0 0 chr4 73288695 73289004 -110999658 - AluY SINE Alu 0 309 1 1063 252 32 96 chr4 73289004 73289327 -110999335 + LTR33A LTR ERVL 238 522 -1 387 307 72 18 chr4 73289947 73290224 -110998438 + ERVL LTR ERVL 821 1112 -4652 305 194 0 0 chr4 73290355 73290422 -110998240 - Charlie5 DNA MER1_type 0 2624 2558 290 148 0 82 chr4 73290443 73290504 -110998158 - Charlie5 DNA MER1_type -2556 56 1 636 300 74 66 chr4 73290805 73291302 -110997360 + LTR33A LTR ERVL 23 523 0 512 267 10 64 chr4 73291653 73291855 -110996807 - LTR16A LTR ERVL -141 309 119 2366 100 3 0 chr4 73291985 73292295 -110996367 - AluSq SINE Alu -2 311 1 257 269 21 21 chr4 73292671 73292764 -110995898 - HERVL LTR ERVL -2485 3169 3077 570 213 64 7 chr4 73292796 73292937 -110995725 + MIR SINE MIR 98 246 -16 2137 126 10 0 chr4 73293031 73293325 -110995337 - AluSx SINE Alu -15 297 1 471 325 64 22 chr4 73293450 73293761 -110994901 + LTR16C LTR ERVL 168 491 0 828 218 109 25 chr4 73294694 73294978 -110993684 - LTR16A LTR ERVL 0 450 143 446 297 23 18 chr4 73295705 73295924 -110992738 + LTR16C LTR ERVL 257 476 -15 227 314 143 19 chr4 73296508 73296613 -110992049 + L2 LINE L2 3151 3268 -4 375 305 92 38 chr4 73296692 73296984 -110991678 - MLT1I LTR MaLR -4 405 98 315 0 0 0 chr4 73298232 73298267 -110990395 + (A)n Simple_repeat Simple_repeat 1 35 0 25 31 0 0 chr4 73302631 73302663 -110985999 + AT_rich Low_complexity Low_complexity 1 32 0 1452 198 26 23 chr4 73305483 73305791 -110982871 + AluJo SINE Alu 4 312 0 1519 163 0 33 chr4 73306063 73306339 -110982323 + AluSx SINE Alu 1 267 -45 23 0 0 0 chr4 73306660 73306683 -110981979 + AT_rich Low_complexity Low_complexity 1 23 0 858 160 0 0 chr4 73307769 73307900 -110980762 + FLAM_C SINE Alu 1 131 -2 1309 118 45 64 chr4 73307924 73308144 -110980518 + AluJb SINE Alu 80 295 -17 1874 156 0 3 chr4 73308148 73308449 -110980213 + AluJo SINE Alu 1 300 -12 685 257 118 0 chr4 73308666 73308853 -110979809 - MER63A DNA MER1_type 0 210 2 348 271 0 0 chr4 73309649 73309734 -110978928 + MIR SINE MIR 177 261 -1 315 188 0 62 chr4 73310268 73310348 -110978314 - MER116 DNA Mariner 0 80 6 678 271 100 19 chr4 73310948 73311069 -110977593 - MIR SINE MIR -7 255 145 2268 82 16 22 chr4 73311069 73311384 -110977278 + AluSq SINE Alu 1 313 0 678 271 100 19 chr4 73311384 73311472 -110977190 - MIR SINE MIR -117 145 29 1295 272 76 40 chr4 73312053 73312527 -110976135 + LTR33 LTR ERVL 2 492 -29 262 241 74 0 chr4 73313083 73313137 -110975525 + MER58 DNA MER1_type 6 63 -152 275 343 130 12 chr4 73313401 73313570 -110975092 + MIR3 SINE MIR 19 207 -1 256 343 123 27 chr4 73315437 73315656 -110973006 + MLT1L LTR MaLR 199 438 -177 * 381 297 39 16 chr4 73315649 73315777 -110972885 + MLT1J LTR MaLR 377 507 -4 233 315 17 16 chr4 73316065 73316189 -110972473 + MIR SINE MIR 34 162 -66 264 306 116 16 chr4 73316467 73316588 -110972074 - L2 LINE L2 -237 3035 2903 330 359 138 0 chr4 73316640 73316835 -110971827 - L2 LINE L2 -571 2743 2522 21 0 0 0 chr4 73317396 73317417 -110971245 + AT_rich Low_complexity Low_complexity 1 21 0 340 248 0 106 chr4 73317501 73317662 -110971000 - L3 LINE CR1 -214 1363 1220 187 381 131 6 chr4 73317839 73317999 -110970663 - L3 LINE CR1 -542 1035 856 455 238 140 8 chr4 73318181 73318370 -110970292 - L1ME4a LINE L1 -251 5870 5663 21 0 0 0 chr4 73318504 73318525 -110970137 + AT_rich Low_complexity Low_complexity 1 21 0 303 288 68 8 chr4 73318577 73318695 -110969967 - L3 LINE CR1 -822 755 631 704 263 98 40 chr4 73318815 73319142 -110969520 + LTR16A LTR ERVL 105 450 0 2231 108 3 0 chr4 73321201 73321507 -110967155 - AluSg1 SINE Alu 0 309 3 217 299 62 10 chr4 73321532 73321629 -110967033 - MIR SINE MIR -50 212 111 2359 83 3 0 chr4 73322263 73322563 -110966099 + AluSp SINE Alu 1 301 -12 240 240 78 69 chr4 73323180 73323299 -110965363 - MIR SINE MIR -70 138 29 1759 148 7 33 chr4 73323880 73324183 -110964479 + AluJo SINE Alu 2 296 -16 392 292 208 15 chr4 73324271 73324473 -110964189 + MIR SINE MIR 2 242 -20 1552 146 37 130 chr4 73324481 73324859 -110963803 + MER7A DNA MER2_type 1 341 -5 457 320 53 20 chr4 73325380 73325530 -110963132 + L2 LINE L2 3116 3270 -2 361 259 113 16 chr4 73326258 73326385 -110962277 - MIR SINE MIR -67 141 3 275 301 81 17 chr4 73326635 73326808 -110961854 + L1ME LINE L1 5612 5795 -326 26 50 0 0 chr4 73327219 73327259 -110961403 + AT_rich Low_complexity Low_complexity 1 40 0 24 0 0 0 chr4 73327307 73327331 -110961331 + AT_rich Low_complexity Low_complexity 1 24 0 2199 128 0 0 chr4 73327381 73327693 -110960969 - AluSx SINE Alu 0 312 1 651 155 23 0 chr4 73327722 73327851 -110960811 + L1MA6 LINE L1 6165 6296 -4 34 0 0 0 chr4 73328905 73328939 -110959723 + AT_rich Low_complexity Low_complexity 1 34 0 411 204 156 72 chr4 73329257 73329424 -110959238 + MER5A DNA MER1_type 9 189 0 447 254 32 76 chr4 73329432 73329617 -110959045 + MER5B DNA MER1_type 1 177 -1 1938 133 0 17 chr4 73330965 73331259 -110957403 - AluSx SINE Alu -23 289 1 342 305 123 21 chr4 73333444 73333757 -110954905 + L1ME LINE L1 5378 5653 -468 2293 68 7 7 chr4 73334150 73334444 -110954218 - AluY SINE Alu -17 294 1 3053 212 87 31 chr4 73334718 73335681 -110952981 + L1MDa LINE L1 991 2016 -4524 1450 158 0 8 chr4 73335681 73335915 -110952747 + AluJo SINE Alu 1 232 -80 3053 212 87 31 chr4 73335915 73335973 -110952689 + L1MDa LINE L1 2016 2069 -4471 3181 244 134 55 chr4 73336167 73337180 -110951482 + L1M4 LINE L1 2609 3541 -2605 1994 148 0 0 chr4 73337180 73337463 -110951199 + AluSx SINE Alu 1 283 -29 216 0 0 0 chr4 73337466 73337490 -110951172 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 3181 244 134 55 chr4 73337490 73338954 -110949708 + L1M4 LINE L1 3542 5286 -860 1965 78 99 0 chr4 73339021 73339304 -110949358 - AluY SINE Alu 0 311 1 898 167 0 20 chr4 73339456 73339606 -110949056 - AluJo SINE Alu -160 152 6 21 0 0 0 chr4 73339964 73339985 -110948677 + AT_rich Low_complexity Low_complexity 1 21 0 330 359 138 0 chr4 73340509 73340704 -110947958 + L2 LINE L2 2522 2743 -571 264 306 116 16 chr4 73340756 73340877 -110947785 + L2 LINE L2 2903 3035 -237 233 315 17 16 chr4 73341155 73341279 -110947383 - MIR SINE MIR -66 142 34 381 297 39 16 chr4 73341567 73341695 -110946967 - MLT1J LTR MaLR -4 507 377 240 347 123 27 chr4 73341688 73341907 -110946755 - MLT1L LTR MaLR -177 438 199 * 1774 117 79 17 chr4 73392062 73392353 -110896309 + AluSx SINE Alu 1 309 -3 230 208 75 0 chr4 73392945 73392998 -110895664 + L1ME LINE L1 5736 5792 -329 2615 50 0 0 chr4 73393065 73393368 -110895294 + AluY SINE Alu 1 303 -8 633 280 55 38 chr4 73393688 73393924 -110894738 + MIR SINE MIR 23 262 0 294 228 152 11 chr4 73394418 73394510 -110894152 + MER117 DNA MER1_type 8 112 -85 853 280 25 34 chr4 73394589 73394955 -110893707 - MLT1I LTR MaLR -32 377 47 1992 119 14 0 chr4 73395063 73395340 -110893322 + AluSx SINE Alu 1 281 -31 26 88 0 0 chr4 73396453 73396521 -110892141 + AT_rich Low_complexity Low_complexity 1 68 0 1553 161 17 50 chr4 73396528 73396827 -110891835 - AluJo SINE Alu -23 289 1 225 172 112 95 chr4 73396980 73397096 -110891566 - L1ME4a LINE L1 -44 6077 5960 1685 186 16 16 chr4 73397306 73397618 -110891044 - AluJo SINE Alu 0 312 1 6429 42 15 0 chr4 73397626 73398361 -110890301 - L1PA5 LINE L1 -1 6153 5408 24 32 0 0 chr4 73398415 73398446 -110890216 + AT_rich Low_complexity Low_complexity 1 31 0 763 186 76 12 chr4 73398701 73398873 -110889789 - L1ME4a LINE L1 -554 5608 5426 281 327 173 24 chr4 73398896 73399104 -110889558 + L3 LINE CR1 1220 1458 -119 238 211 144 22 chr4 73399112 73399202 -110889460 - LTR67 LTR ERVL 0 557 457 391 305 63 47 chr4 73399361 73399551 -110889111 - MLT1K LTR MaLR -394 194 2 212 250 0 16 chr4 73400516 73400580 -110888082 + GA-rich Low_complexity Low_complexity 2 64 0 1578 207 95 17 chr4 73400805 73401215 -110887447 - L1ME3A LINE L1 -57 6113 5672 280 179 83 48 chr4 73401217 73401301 -110887361 - L1ME LINE L1 -441 5729 5643 291 243 122 19 chr4 73401490 73401597 -110887065 - L1ME LINE L1 -602 5564 5447 1714 102 3 78 chr4 73402280 73402563 -110886099 + AluSp SINE Alu 38 299 -14 24 32 0 0 chr4 73402661 73402692 -110885970 + AT_rich Low_complexity Low_complexity 1 31 0 2252 103 0 0 chr4 73402806 73403097 -110885565 + AluSx SINE Alu 1 291 -21 278 318 68 27 chr4 73403506 73403654 -110885008 + MIR SINE MIR 59 212 -50 3451 280 58 43 chr4 73403749 73405115 -110883547 + L1MEc LINE L1 36 1439 -4957 2306 88 0 7 chr4 73405115 73405421 -110883241 + AluY SINE Alu 1 304 -7 3451 280 58 43 chr4 73405421 73405945 -110882717 + L1MEc LINE L1 1439 1954 -4442 3108 221 40 13 chr4 73406151 73406906 -110881756 - L1ME1 LINE L1 -87 6079 5305 1796 91 58 11 chr4 73406909 73407183 -110881479 + L1PA10 LINE L1 5881 6167 -1 14723 87 5 1 chr4 73407197 73409516 -110879146 + L1P3 LINE L1 3324 5649 -505 985 244 185 47 chr4 73409651 73410073 -110878589 + HAL1 LINE L1 177 656 -1851 2038 154 0 0 chr4 73410254 73410566 -110878096 - AluSx SINE Alu 0 312 1 232 306 16 16 chr4 73410597 73410721 -110877941 + T-rich Low_complexity Low_complexity 2 125 0 25 31 0 0 chr4 73411264 73411296 -110877366 + AT_rich Low_complexity Low_complexity 1 32 0 748 182 8 15 chr4 73412802 73412934 -110875728 + FLAM_A SINE Alu 1 131 -2 620 221 86 18 chr4 73413364 73413527 -110875135 + MER58C DNA MER1_type 36 209 -6 289 273 73 27 chr4 73413607 73413717 -110874945 + L1ME LINE L1 374 488 -5908 19045 101 29 5 chr4 73413901 73416542 -110872120 + Charlie3 DNA MER1_type 1 2705 -5 1417 195 32 3 chr4 73416623 73416905 -110871757 - AluJo SINE Alu -22 290 1 705 203 71 6 chr4 73417157 73417389 -110871273 + L1ME LINE L1 1210 1448 -4958 * 1224 204 43 98 chr4 73417379 73417819 -110870843 + L1MD2 LINE L1 5494 5909 -450 * 3797 195 31 2 chr4 73417817 73418718 -110869944 + L1MB3 LINE L1 5099 6025 -158 342 269 180 24 chr4 73418718 73418885 -110869777 + L1ME1 LINE L1 5898 6090 -76 2174 103 3 7 chr4 73419054 73419356 -110869306 - AluSx SINE Alu -11 301 1 1443 99 0 5 chr4 73419415 73419607 -110869055 + AluSg/x SINE Alu 107 297 -15 400 298 144 0 chr4 73419683 73420009 -110868653 - L1ME4a LINE L1 -4 6117 5745 216 0 0 0 chr4 73420062 73420086 -110868576 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 915 227 87 5 chr4 73420177 73420384 -110868278 + MER58A DNA MER1_type 1 224 0 1772 193 0 0 chr4 73420510 73420805 -110867857 + AluJb SINE Alu 6 300 -12 933 227 87 5 chr4 73421759 73421966 -110866696 + MER58A DNA MER1_type 1 224 0 263 373 63 7 chr4 73421978 73422120 -110866542 + L2 LINE L2 2686 2835 -479 3908 60 4 6 chr4 73422347 73422850 -110865812 + L1PA7 LINE L1 5649 6150 -4 234 214 8 103 chr4 73422906 73423032 -110865630 + L1MC4 LINE L1 7928 8041 -1 21 0 0 0 chr4 73423049 73423070 -110865592 + AT_rich Low_complexity Low_complexity 1 21 0 1741 228 119 54 chr4 73423071 73423180 -110865482 - L1ME4a LINE L1 -843 5303 5203 1940 103 48 4 chr4 73423180 73423475 -110865187 - AluSq SINE Alu 0 309 3 1741 228 119 54 chr4 73423475 73424142 -110864520 - L1ME4a LINE L1 -943 5203 4475 1948 249 41 48 chr4 73424151 73425003 -110863659 - L1ME4a LINE L1 -2151 3995 3150 1396 203 35 38 chr4 73425007 73425095 -110863567 - L1MB8 LINE L1 0 6178 6091 758 258 31 126 chr4 73425095 73425464 -110863198 - L1MD2 LINE L1 -258 6101 5779 2348 54 40 0 chr4 73425464 73425761 -110862901 - AluY SINE Alu -2 309 1 758 258 31 126 chr4 73425761 73425836 -110862826 - L1MD2 LINE L1 -580 5779 5699 2691 187 60 13 chr4 73425836 73426455 -110862207 - L1MB8 LINE L1 -955 5191 4544 * 2791 196 33 35 chr4 73426448 73427199 -110861463 + L1 LINE L1 2992 3741 -2405 3181 163 46 23 chr4 73427658 73428399 -110860263 + L1 LINE L1 3711 4430 -1716 309 85 0 0 chr4 73428402 73428449 -110860213 + L1PB1 LINE L1 6105 6151 0 741 135 24 0 chr4 73428780 73428906 -110859756 + L1 LINE L1 4416 4544 -1602 * 4070 220 46 29 chr4 73428905 73430146 -110858516 - L1MD2 LINE L1 -942 5204 3943 2036 211 16 12 chr4 73430159 73430662 -110858000 - L1MD2 LINE L1 -3053 3093 2589 378 0 0 0 chr4 73430679 73430721 -110857941 + (TG)n Simple_repeat Simple_repeat 1 42 0 202 123 14 68 chr4 73431706 73431779 -110856883 + T-rich Low_complexity Low_complexity 3 71 0 35 24 0 0 chr4 73431805 73431847 -110856815 + AT_rich Low_complexity Low_complexity 1 42 0 10198 31 0 163 chr4 73431847 73433485 -110855177 - SVA Other Other -11 1375 5 210 245 0 0 chr4 73433487 73433540 -110855122 + GA-rich Low_complexity Low_complexity 4 56 0 185 94 31 0 chr4 73433887 73433919 -110854743 + CT-rich Low_complexity Low_complexity 3 35 0 287 218 30 109 chr4 73433991 73434092 -110854570 + L2 LINE L2 3180 3272 0 584 224 32 16 chr4 73434246 73434371 -110854291 - L2 LINE L2 0 3313 3187 305 311 8 25 chr4 73434385 73434504 -110854158 - MIR SINE MIR -74 188 72 272 258 0 15 chr4 73435119 73435185 -110853477 + Charlie8 DNA MER1_type 1361 1425 -992 2476 51 3 0 chr4 73435234 73435545 -110853117 - L1PB1 LINE L1 0 6867 6556 14594 177 20 19 chr4 73435545 73437286 -110851376 - L1PB1 LINE L1 -687 6180 4442 1962 133 3 32 chr4 73437286 73437594 -110851068 + AluSq SINE Alu 1 299 -14 14594 177 20 19 chr4 73437594 73440582 -110848080 - L1PB1 LINE L1 -2425 4442 1392 356 189 14 0 chr4 73440579 73440653 -110848009 - L1PB1 LINE L1 -6666 197 123 * 264 344 161 32 chr4 73440676 73440955 -110847707 + L2 LINE L2 2942 3256 -16 548 253 62 28 chr4 73441247 73441425 -110847237 + MIR SINE MIR 65 248 -14 411 73 0 0 chr4 73441441 73441496 -110847166 + (TTA)n Simple_repeat Simple_repeat 1 55 0 290 339 12 55 chr4 73441614 73441779 -110846883 - L3 LINE CR1 -1 1576 1419 7302 56 150 45 chr4 73441882 73443027 -110845635 - MER11A LTR ERVK 0 1266 1 2432 93 0 0 chr4 73445072 73445383 -110843279 - AluSq SINE Alu -2 311 1 22 0 0 0 chr4 73446348 73446370 -110842292 + AT_rich Low_complexity Low_complexity 1 22 0 2250 101 3 0 chr4 73447185 73447482 -110841180 - AluSx SINE Alu -14 298 1 4929 152 37 1 chr4 73447903 73448737 -110839925 + MER6 DNA MER2_type 1 864 -1 208 97 81 0 chr4 73449421 73449483 -110839179 + (TA)n Simple_repeat Simple_repeat 2 68 0 353 316 24 18 chr4 73450200 73450368 -110838294 + L1MC5 LINE L1 7269 7437 -524 1444 211 43 48 chr4 73450734 73450870 -110837792 + MSTD LTR MaLR 1 136 -260 901 156 32 38 chr4 73450870 73451056 -110837606 + L1PB4 LINE L1 5972 6156 0 1444 211 43 48 chr4 73451056 73451313 -110837349 + MSTD LTR MaLR 136 392 -4 407 205 234 53 chr4 73451336 73451507 -110837155 - MIR SINE MIR -55 207 6 330 266 123 27 chr4 73451870 73452206 -110836456 - L1ME4a LINE L1 -82 6039 5609 242 143 0 0 chr4 73452955 73452990 -110835672 - tRNA-Phe-TTC tRNA tRNA -41 35 1 630 171 196 6 chr4 73455255 73455380 -110833282 - MER5A DNA MER1_type -1 188 26 447 19 0 0 chr4 73455380 73455432 -110833230 + (ATG)n Simple_repeat Simple_repeat 1 52 0 630 171 196 6 chr4 73455432 73455464 -110833198 - MER5A DNA MER1_type -163 26 1 219 259 123 12 chr4 73455499 73455580 -110833082 + MER5B DNA MER1_type 89 178 0 21 82 0 0 chr4 73456316 73456365 -110832297 + AT_rich Low_complexity Low_complexity 1 49 0 227 250 95 26 chr4 73456442 73456558 -110832104 + L1M2 LINE L1 5337 5460 -831 * 322 281 54 36 chr4 73456557 73456835 -110831827 + L1ME4a LINE L1 5599 5881 -240 438 281 40 25 chr4 73457141 73457340 -110831322 - MLT1K LTR MaLR 0 588 387 796 209 93 0 chr4 73458932 73459114 -110829548 + MER3 DNA MER1_type 9 207 -2 3124 185 97 18 chr4 73459676 73460591 -110828071 - Charlie2 DNA MER1_type -19 2843 1856 226 283 127 82 chr4 73460583 73460898 -110827764 - Charlie2 DNA MER1_type -2533 329 1 * 641 266 90 35 chr4 73460898 73461295 -110827367 + MLT1L LTR MaLR 148 566 -49 700 208 10 96 chr4 73461482 73461775 -110826887 - L1MC5 LINE L1 -731 7230 6963 1010 144 136 39 chr4 73461801 73462058 -110826604 + MER44D DNA MER2_type 1 552 -57 231 239 0 0 chr4 73462139 73462185 -110826477 + MER44D DNA MER2_type 557 602 -3 1051 216 11 65 chr4 73462186 73462601 -110826061 - L1MC5 LINE L1 -892 6916 6566 22 35 0 0 chr4 73462601 73462630 -110826032 + AT_rich Low_complexity Low_complexity 1 29 0 377 191 284 6 chr4 73462887 73463049 -110825613 - L1ME4a LINE L1 -2320 5488 5282 24653 32 0 0 chr4 73463358 73467131 -110821531 + L1PA4 LINE L1 2379 6151 -4 1344 139 5 14 chr4 73467444 73467667 -110820995 - L1PA14 LINE L1 0 6161 5941 490 308 98 21 chr4 73468859 73469184 -110819478 + L2 LINE L2 2468 2817 -497 282 29 0 0 chr4 73469309 73469344 -110819318 + (TG)n Simple_repeat Simple_repeat 1 35 0 840 223 0 0 chr4 73469363 73469520 -110819142 - FAM SINE Alu -18 157 1 24 0 0 0 chr4 73469526 73469550 -110819112 + AT_rich Low_complexity Low_complexity 1 24 0 755 200 15 0 chr4 73469565 73469695 -110818967 + FLAM_A SINE Alu 2 133 0 204 330 80 0 chr4 73469827 73469927 -110818735 + MIR SINE MIR 3 110 -152 2201 125 19 32 chr4 73469989 73470358 -110818304 - THE1B LTR MaLR 0 364 1 23 0 0 0 chr4 73471326 73471349 -110817313 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr4 73471805 73471826 -110816836 + (T)n Simple_repeat Simple_repeat 1 21 0 686 250 42 6 chr4 73472474 73472642 -110816020 + MIR SINE MIR 30 203 -59 1745 123 118 49 chr4 73473149 73473202 -110815460 + MLT1B LTR MaLR 1 49 -341 2027 122 44 39 chr4 73473202 73473564 -110815098 - THE1B LTR MaLR 0 364 1 11826 82 15 1 chr4 73473564 73475122 -110813540 - THE1B-int LTR MaLR 0 1580 1 2080 132 25 30 chr4 73475122 73475485 -110813177 - THE1B LTR MaLR 0 364 4 1745 123 118 49 chr4 73475485 73475794 -110812868 + MLT1B LTR MaLR 48 390 0 2164 116 7 7 chr4 73475970 73476273 -110812389 - AluSx SINE Alu -8 304 2 183 299 149 0 chr4 73476414 73476481 -110812181 + L2 LINE L2 3187 3263 -50 434 277 218 11 chr4 73477232 73477420 -110811242 - MIR SINE MIR -6 256 30 345 274 72 99 chr4 73478211 73478254 -110810408 - MIR SINE MIR 0 262 219 666 246 47 6 chr4 73478254 73478425 -110810237 + MER45A DNA AcHobo 1 178 0 345 274 72 99 chr4 73478425 73478644 -110810018 - MIR SINE MIR -43 219 7 1991 186 14 3 chr4 73481224 73481585 -110807077 + MLT1A1 LTR MaLR 1 365 0 253 273 118 27 chr4 73482331 73482441 -110806221 - L2 LINE L2 0 3272 3153 12690 52 74 4 chr4 73483434 73485196 -110803466 + L1P LINE L1 2 1886 -4260 542 139 8 25 chr4 73485322 73485444 -110803218 + G-rich Low_complexity Low_complexity 2 121 0 205 345 42 24 chr4 73485670 73485838 -110802824 + L2 LINE L2 2520 2690 -624 1406 123 53 8 chr4 73485854 73486098 -110802564 + MLT2B2 LTR ERVL 1 255 -260 314 120 83 0 chr4 73486081 73486129 -110802533 + MLT2B1 LTR ERVL 453 485 -35 * 219 88 0 0 chr4 73486129 73486163 -110802499 + (TCTA)n Simple_repeat Simple_repeat 2 35 0 314 120 83 0 chr4 73486163 73486203 -110802459 + MLT2B1 LTR ERVL 485 520 0 235 332 243 6 chr4 73486312 73486625 -110802037 + L2 LINE L2 2876 3262 -51 266 265 0 44 chr4 73487113 73487181 -110801481 - L2 LINE L2 0 3272 3208 2802 133 23 10 chr4 73487337 73487779 -110800883 + L1MB2 LINE L1 5676 6127 -44 2221 100 0 0 chr4 73487779 73488089 -110800573 + AluSc SINE Alu 1 310 0 2802 133 23 10 chr4 73488089 73488132 -110800530 + L1MB2 LINE L1 6127 6168 -3 305 252 39 52 chr4 73488736 73488891 -110799771 + L1MC5 LINE L1 7761 7913 -48 15588 19 0 0 chr4 73489286 73491966 -110796696 + L1HS LINE L1 3476 6155 0 24 0 0 0 chr4 73492596 73492620 -110796042 + AT_rich Low_complexity Low_complexity 1 24 0 214 182 0 0 chr4 73492989 73493033 -110795629 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 3812 31 0 0 chr4 73493033 73493481 -110795181 - L1PA4 LINE L1 -6 6149 5702 248 319 11 11 chr4 73493663 73493754 -110794908 + MLT1J LTR MaLR 109 199 -312 892 317 37 12 chr4 73494013 73494338 -110794324 + LTR16A LTR ERVL 112 444 -6 306 308 0 0 chr4 73494835 73494913 -110793749 - L2 LINE L2 -214 3058 2981 1964 182 49 28 chr4 73494954 73495427 -110793235 + L1MB4 LINE L1 5692 6174 -6 390 240 27 49 chr4 73495824 73496007 -110792655 - L1ME3 LINE L1 -43 6119 5941 186 283 43 0 chr4 73496646 73496692 -110791970 - L2 LINE L2 -31 3282 3235 293 261 11 0 chr4 73497468 73497560 -110791102 - LTR33 LTR ERVL -18 503 411 551 191 158 22 chr4 73497628 73497811 -110790851 - LTR33 LTR ERVL -247 274 67 1900 157 0 26 chr4 73497953 73498265 -110790397 - AluJb SINE Alu -8 304 1 33 0 0 0 chr4 73498435 73498468 -110790194 + AT_rich Low_complexity Low_complexity 1 33 0 2938 144 43 0 chr4 73498589 73499150 -110789512 - L1PBa LINE L1 -4887 1976 1392 842 209 9 9 chr4 73499127 73499338 -110789324 - L1PBa LINE L1 -6647 216 6 * 219 283 81 40 chr4 73499542 73499641 -110789021 + MIR SINE MIR 84 186 -76 1739 210 38 32 chr4 73500696 73501191 -110787471 - MLT1D LTR MaLR -7 498 1 1853 169 26 0 chr4 73501727 73502029 -110786633 + AluJo SINE Alu 1 310 -2 2978 203 25 47 chr4 73502908 73503353 -110785309 + MER82 DNA MER2_type 2 432 -221 2200 99 0 3 chr4 73503353 73503637 -110785025 + AluSq SINE Alu 1 317 0 252 0 59 0 chr4 73503637 73503671 -110784991 + (TAAAA)n Simple_repeat Simple_repeat 2 180 0 2978 203 25 47 chr4 73503671 73503889 -110784773 + MER82 DNA MER2_type 432 653 0 1960 154 0 0 chr4 73504567 73504860 -110783802 - AluSx SINE Alu -19 293 1 189 310 17 0 chr4 73504882 73504940 -110783722 + MER5A DNA MER1_type 131 189 0 923 153 60 22 chr4 73505090 73505273 -110783389 - MER20 DNA MER1_type 0 219 30 380 104 15 0 chr4 73506331 73506398 -110782264 + (TA)n Simple_repeat Simple_repeat 2 69 0 216 213 13 67 chr4 73507380 73507455 -110781207 - MIR SINE MIR -8 254 184 2807 142 5 29 chr4 73508195 73508640 -110780022 - Tigger2a DNA MER2_type 0 434 1 314 285 116 41 chr4 73508772 73509014 -110779648 - LTR16C LTR ERVL -2 489 230 2498 65 0 0 chr4 73509315 73509609 -110779053 - AluY SINE Alu -17 294 1 635 230 115 40 chr4 73509871 73510071 -110778591 - MIR SINE MIR -25 237 23 2345 93 0 6 chr4 73510962 73511275 -110777387 + AluY SINE Alu 1 311 0 31102 59 3 1 chr4 73511346 73515234 -110773428 + L1P LINE L1 1 3899 -2247 4586 33 0 0 chr4 73515234 73515728 -110772934 + L1PA4 LINE L1 5646 6155 0 1414 181 29 122 chr4 73516063 73516473 -110772189 - MLT1A2 LTR MaLR 0 374 3 205 311 0 0 chr4 73516548 73516609 -110772053 - L2 LINE L2 -7 3265 3205 354 23 0 0 chr4 73516612 73516655 -110772007 + (GGGAA)n Simple_repeat Simple_repeat 1 43 0 218 173 0 19 chr4 73516673 73516725 -110771937 + GA-rich Low_complexity Low_complexity 1 51 0 595 313 113 16 chr4 73516740 73517104 -110771558 - L2 LINE L2 -91 3222 2824 430 332 204 18 chr4 73517305 73517805 -110770857 - L2 LINE L2 -640 2674 2082 1314 174 38 16 chr4 73518632 73518930 -110769732 + MLT2C1 LTR ERVL 1 291 -106 615 88 0 0 chr4 73518930 73519010 -110769652 - MADE1 DNA Mariner 0 80 1 503 30 0 15 chr4 73519012 73519078 -110769584 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 1314 174 38 16 chr4 73519078 73519121 -110769541 + MLT2C1 LTR ERVL 291 395 -2 2234 125 0 0 chr4 73519443 73519747 -110768915 + AluY SINE Alu 1 304 -7 1020 187 29 0 chr4 73522436 73522631 -110766031 + MLT1E3 LTR MaLR 46 305 -349 903 235 128 13 chr4 73522821 73523055 -110765607 + MER58 DNA MER1_type 5 265 -76 409 202 19 48 chr4 73523061 73523165 -110765497 + MLT2C1 LTR ERVL 294 394 -3 289 284 25 0 chr4 73523282 73523363 -110765299 - MER5A DNA MER1_type -80 109 27 387 0 0 0 chr4 73523490 73523533 -110765129 + (CA)n Simple_repeat Simple_repeat 2 44 0 231 311 270 14 chr4 73524043 73524358 -110764304 + L2 LINE L2 1861 2094 -1220 2339 106 0 6 chr4 73524358 73524670 -110763992 - AluSx SINE Alu -2 310 1 231 311 270 14 chr4 73524670 73524843 -110763819 + L2 LINE L2 2094 2474 -840 210 316 79 22 chr4 73524819 73524958 -110763704 + L2 LINE L2 2957 3103 -169 * 307 302 111 8 chr4 73527044 73527170 -110761492 + L2 LINE L2 3134 3272 0 235 293 267 17 chr4 73527170 73527286 -110761376 + L2 LINE L2 3128 3272 0 470 182 121 0 chr4 73528429 73528528 -110760134 + MLT1C LTR MaLR 1 111 -356 202 302 135 21 chr4 73528905 73529001 -110759661 - L3 LINE CR1 -2 1575 1469 969 220 76 70 chr4 73529021 73529362 -110759300 + MLT1C LTR MaLR 125 467 0 242 300 33 11 chr4 73529362 73529452 -110759210 - MIR SINE MIR -89 173 82 1041 56 0 0 chr4 73530052 73530178 -110758484 + AluY SINE Alu 174 299 -12 494 356 115 0 chr4 73530266 73530527 -110758135 + L3 LINE CR1 417 707 -870 783 295 129 6 chr4 73530661 73531017 -110757645 + L3 LINE CR1 1176 1575 -2 915 281 106 39 chr4 73531335 73531777 -110756885 + LTR33 LTR ERVL 50 521 0 24 32 0 0 chr4 73534504 73534535 -110754127 + AT_rich Low_complexity Low_complexity 1 31 0 423 241 56 0 chr4 73535853 73535961 -110752701 + MIR SINE MIR 2 115 -147 22 0 0 0 chr4 73536014 73536036 -110752626 + AT_rich Low_complexity Low_complexity 1 22 0 447 239 109 43 chr4 73536881 73537065 -110751597 - L2 LINE L2 0 3313 3118 684 274 58 25 chr4 73537181 73537422 -110751240 - MIR SINE MIR -13 249 1 743 260 44 0 chr4 73537634 73537838 -110750824 - MIR SINE MIR 0 262 50 210 91 0 0 chr4 73538816 73538849 -110749813 + (A)n Simple_repeat Simple_repeat 1 33 0 917 264 53 0 chr4 73539441 73539687 -110748975 + MIR SINE MIR 3 261 -1 352 202 67 39 chr4 73539739 73539843 -110748819 + MLT1J LTR MaLR 375 481 -30 258 368 72 16 chr4 73539892 73540017 -110748645 + L2 LINE L2 3125 3256 -16 842 271 102 32 chr4 73540127 73540529 -110748133 - MLT1J1 LTR MaLR -2 444 15 1088 257 120 55 chr4 73541183 73541693 -110746969 + MLT1H LTR MaLR 1 543 -6 260 345 136 0 chr4 73541699 73541809 -110746853 - MIR3 SINE MIR -46 162 38 22 70 0 0 chr4 73542737 73542780 -110745882 + AT_rich Low_complexity Low_complexity 1 43 0 580 76 0 0 chr4 73545456 73545535 -110743127 - AluSp/q SINE Alu 0 313 235 556 261 85 15 chr4 73545669 73545868 -110742794 - MIR SINE MIR 0 262 50 1924 149 3 7 chr4 73546077 73546373 -110742289 - AluSx SINE Alu -17 295 1 627 285 88 58 chr4 73546631 73546961 -110741701 - MER102b DNA MER1_type -1 340 1 2282 125 0 0 chr4 73547326 73547630 -110741032 - AluSx SINE Alu -8 304 1 225 132 26 0 chr4 73548683 73548721 -110739941 - L1M4 LINE L1 -333 5841 5803 * 4087 173 101 12 chr4 73548716 73550157 -110738505 + L1PA16 LINE L1 4325 5908 -258 182 346 12 0 chr4 73552016 73552097 -110736565 - L2 LINE L2 -5 3267 3186 207 0 0 0 chr4 73554598 73554621 -110734041 + (A)n Simple_repeat Simple_repeat 1 23 0 426 255 9 19 chr4 73555804 73555910 -110732752 + L2 LINE L2 3204 3308 -5 336 339 103 0 chr4 73557525 73557699 -110730963 + L1MC4a LINE L1 5768 5959 -1849 401 350 25 12 chr4 73558864 73559027 -110729635 + MIR3 SINE MIR 44 208 0 479 297 91 6 chr4 73559682 73559857 -110728805 - MIR SINE MIR -48 214 25 856 261 67 63 chr4 73559996 73560518 -110728144 + HAL1 LINE L1 1675 2198 -309 519 187 21 96 chr4 73560523 73560710 -110727952 + L1MC5 LINE L1 7724 7896 -65 609 234 53 31 chr4 73560860 73561087 -110727575 + HAL1 LINE L1 2271 2502 -5 2116 123 49 22 chr4 73561142 73561507 -110727155 - THE1C LTR MaLR 0 375 1 211 250 26 0 chr4 73561749 73561825 -110726837 + A-rich Low_complexity Low_complexity 1 78 0 970 260 37 39 chr4 73562081 73562489 -110726173 + L1ME4a LINE L1 5478 5884 -237 234 0 0 0 chr4 73562751 73562777 -110725885 + (CA)n Simple_repeat Simple_repeat 2 27 0 392 250 191 8 chr4 73562896 73563284 -110725378 - L1M4 LINE L1 -2898 3248 2790 509 72 0 0 chr4 73563305 73563374 -110725288 - Alu SINE Alu -10 302 234 480 18 0 0 chr4 73564356 73564413 -110724249 + (TCTCCC)n Simple_repeat Simple_repeat 2 58 0 9939 76 20 1 chr4 73564417 73565739 -110722923 + SVA Other Other 40 1386 0 5426 131 12 8 chr4 73565820 73566700 -110721962 - L1MC1 LINE L1 -5 6328 5445 203 319 151 17 chr4 73567015 73567134 -110721528 + MIR SINE MIR 20 154 -108 3965 176 14 1 chr4 73567258 73567998 -110720664 + L1MB7 LINE L1 5428 6176 -8 22 35 0 0 chr4 73568014 73568043 -110720619 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr4 73568239 73568273 -110720389 + AT_rich Low_complexity Low_complexity 1 34 0 695 190 0 0 chr4 73568859 73568975 -110719687 + FLAM_A SINE Alu 1 116 -17 2403 52 0 3 chr4 73569186 73569477 -110719185 - AluY SINE Alu -9 302 13 259 333 57 9 chr4 73570253 73570358 -110718304 - MIR SINE MIR -80 128 19 1080 209 52 5 chr4 73571174 73571384 -110717278 - AluJo SINE Alu -92 220 1 192 77 0 0 chr4 73571396 73571422 -110717240 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1926 139 0 11 chr4 73571426 73571707 -110716955 - AluSx SINE Alu -26 286 9 2573 117 42 26 chr4 73572021 73572448 -110716214 + Tigger2a DNA MER2_type 1 434 0 595 249 58 39 chr4 73572709 73572914 -110715748 + MLT1K LTR MaLR 380 588 0 366 281 37 119 chr4 73573506 73573563 -110715099 - MLT1K LTR MaLR -2 586 526 2124 111 20 0 chr4 73573563 73573686 -110714976 + AluSq SINE Alu 1 120 -193 186 43 0 0 chr4 73573686 73573709 -110714953 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2124 111 20 0 chr4 73573709 73573883 -110714779 + AluSq SINE Alu 120 304 -9 366 281 37 119 chr4 73573883 73574120 -110714542 - MLT1K LTR MaLR -62 526 316 256 275 72 0 chr4 73575024 73575093 -110713569 + MER21B LTR ERV1 13 86 -777 2375 233 70 50 chr4 73575120 73575862 -110712800 + MER21B LTR ERV1 19 775 -88 243 61 0 0 chr4 73575866 73575899 -110712763 + (CA)n Simple_repeat Simple_repeat 2 34 0 188 259 0 19 chr4 73576060 73576114 -110712548 + L2 LINE L2 3261 3313 0 720 216 85 35 chr4 73576209 73576408 -110712254 + MER3 DNA MER1_type 1 209 0 273 308 11 11 chr4 73577030 73577121 -110711541 + MIR3 SINE MIR 10 100 -108 1488 191 0 3 chr4 73577912 73578194 -110710468 + L1PB4 LINE L1 5873 6153 -3 21 0 0 0 chr4 73578194 73578215 -110710447 + AT_rich Low_complexity Low_complexity 1 21 0 1489 201 50 0 chr4 73578257 73578417 -110710245 - AluJo SINE Alu -19 293 112 231 61 0 0 chr4 73578417 73578450 -110710212 + (TG)n Simple_repeat Simple_repeat 2 34 0 1489 201 50 0 chr4 73578450 73578568 -110710094 - AluJo SINE Alu -200 112 1 509 234 216 6 chr4 73579896 73580067 -110708595 - MIR SINE MIR -17 245 39 477 254 42 32 chr4 73580169 73580358 -110708304 - MLT1L LTR MaLR -14 601 411 315 136 114 11 chr4 73580910 73580998 -110707664 - MLT1L LTR MaLR -366 249 153 22 0 0 0 chr4 73581747 73581769 -110706893 + AT_rich Low_complexity Low_complexity 1 22 0 203 238 16 16 chr4 73582013 73582076 -110706586 + (TA)n Simple_repeat Simple_repeat 2 64 0 250 235 20 0 chr4 73582732 73582783 -110705879 - L3 LINE CR1 -100 1477 1426 25 0 0 0 chr4 73583485 73583510 -110705152 + AT_rich Low_complexity Low_complexity 1 25 0 1102 187 0 28 chr4 73583847 73584061 -110704601 - MER3 DNA MER1_type -1 208 1 406 360 23 17 chr4 73584065 73584240 -110704422 - MIR3 SINE MIR -31 177 2 361 335 56 11 chr4 73584271 73584450 -110704212 - MIR SINE MIR -37 225 39 446 304 87 6 chr4 73584674 73584835 -110703827 - MIR SINE MIR 0 262 89 312 143 0 0 chr4 73585363 73585419 -110703243 + (TA)n Simple_repeat Simple_repeat 1 56 0 385 282 64 32 chr4 73585722 73585878 -110702784 + MIR SINE MIR 29 189 -73 346 281 76 38 chr4 73585961 73586171 -110702491 - MIR SINE MIR -34 228 11 319 277 24 0 chr4 73586398 73586481 -110702181 + MIR3 SINE MIR 103 187 -21 1160 240 148 33 chr4 73587026 73587560 -110701102 + L2 LINE L2 2707 3307 -6 1681 134 100 34 chr4 73587658 73588001 -110700661 + AluSg SINE Alu 1 310 0 219 296 52 97 chr4 73588297 73588495 -110700167 + MIR SINE MIR 23 220 -42 214 157 28 46 chr4 73590302 73590410 -110698252 + (TA)n Simple_repeat Simple_repeat 1 106 0 302 180 40 80 chr4 73590430 73590530 -110698132 - L1MC4 LINE L1 -1339 6703 6608 * 304 170 43 64 chr4 73590494 73590588 -110698074 + L1MC4 LINE L1 6612 6703 -1339 188 33 0 33 chr4 73591413 73591443 -110697219 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 201 179 0 26 chr4 73591586 73591625 -110697037 + (TATG)n Simple_repeat Simple_repeat 3 40 0 274 262 49 41 chr4 73593808 73593930 -110694732 + L2 LINE L2 3191 3313 0 2016 168 0 0 chr4 73594503 73594812 -110693850 + AluSx SINE Alu 1 309 -3 266 349 38 19 chr4 73594893 73594999 -110693663 - MIR3 SINE MIR -31 177 70 293 221 0 0 chr4 73595489 73595557 -110693105 + MIR SINE MIR 183 250 -12 198 0 0 0 chr4 73595563 73595585 -110693077 + (TTCA)n Simple_repeat Simple_repeat 3 24 0 180 0 0 0 chr4 73595742 73595762 -110692900 + (CCCCCG)n Simple_repeat Simple_repeat 2 21 0 363 78 0 0 chr4 73597498 73597549 -110691113 + (CA)n Simple_repeat Simple_repeat 1 51 0 233 163 0 0 chr4 73599815 73599858 -110688804 + L2 LINE L2 3271 3313 0 2178 99 0 0 chr4 73599955 73600238 -110688424 + AluSg SINE Alu 7 289 -21 722 219 0 0 chr4 73600442 73600570 -110688092 + FAM SINE Alu 1 128 -57 615 226 127 28 chr4 73601269 73601450 -110687212 - MIR SINE MIR 0 262 64 271 247 0 13 chr4 73601464 73601541 -110687121 - MLT1J2 LTR MaLR -15 435 360 539 29 14 0 chr4 73601814 73601883 -110686779 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 214 278 9 37 chr4 73601991 73602099 -110686563 + CT-rich Low_complexity Low_complexity 3 107 0 501 278 72 39 chr4 73602400 73602739 -110685923 - L1MC4a LINE L1 -297 5824 5591 481 209 70 0 chr4 73602837 73602952 -110685710 + MIR SINE MIR 70 192 -70 318 230 133 73 chr4 73603009 73603174 -110685488 - L1MC4a LINE L1 -734 5432 5258 303 289 20 20 chr4 73604123 73604272 -110684390 + L1ME4a LINE L1 5749 5897 -224 1509 212 26 50 chr4 73604300 73604678 -110683984 - MLT1A2 LTR MaLR -5 369 1 303 248 160 16 chr4 73604732 73604857 -110683805 + L1ME4a LINE L1 5974 6116 -5 1227 142 28 31 chr4 73605147 73605401 -110683261 + MER33 DNA MER1_type 23 275 -49 3047 215 19 10 chr4 73605421 73606120 -110682542 + L1ME1 LINE L1 5448 6152 -14 180 0 0 0 chr4 73606138 73606158 -110682504 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1683 175 10 20 chr4 73606196 73606488 -110682174 + AluJo SINE Alu 1 289 -23 265 306 89 0 chr4 73606698 73606855 -110681807 + MLT1I LTR MaLR 232 402 -7 340 269 46 19 chr4 73607199 73607307 -110681355 + MER94 DNA DNA 1 111 -23 272 262 41 55 chr4 73607775 73607920 -110680742 + MIR SINE MIR 76 218 -44 548 303 59 76 chr4 73609581 73610069 -110678593 + HAL1 LINE L1 810 1289 -1218 218 56 28 0 chr4 73610528 73610564 -110678098 + (CA)n Simple_repeat Simple_repeat 1 37 0 1116 115 22 11 chr4 73610811 73610993 -110677669 - MER30B DNA MER1_type -6 184 1 207 0 0 0 chr4 73610996 73611019 -110677643 + (A)n Simple_repeat Simple_repeat 1 23 0 1926 141 0 7 chr4 73611412 73611681 -110676981 + AluSx SINE Alu 9 275 -37 290 154 0 31 chr4 73611716 73611781 -110676881 + GA-rich Low_complexity Low_complexity 1 63 0 880 141 12 6 chr4 73611795 73611958 -110676704 + GA-rich Low_complexity Low_complexity 1 164 0 219 69 0 0 chr4 73612063 73612092 -110676570 + (TC)n Simple_repeat Simple_repeat 2 30 0 378 0 0 0 chr4 73612092 73612134 -110676528 + (CA)n Simple_repeat Simple_repeat 1 42 0 333 337 129 15 chr4 73612141 73612343 -110676319 + HAL1b LINE L1 386 610 -738 873 293 69 54 chr4 73612815 73613422 -110675240 + L1ME1 LINE L1 2664 3279 -2867 1115 333 67 5 chr4 73613457 73614028 -110674634 + HERVL LTR ERVL 1346 1951 -3703 1147 224 38 42 chr4 73614380 73614693 -110673969 - MLT1D-int LTR MaLR -97 1274 963 3311 212 7 73 chr4 73614833 73615778 -110672884 - MLT1D-int LTR MaLR -488 883 1 1929 193 66 27 chr4 73615778 73616264 -110672398 - MLT1D LTR MaLR 0 505 1 2032 268 66 23 chr4 73616264 73617003 -110671659 - L1MEc LINE L1 -5589 807 37 3240 206 58 31 chr4 73617006 73617701 -110670961 + L1ME1 LINE L1 4643 5318 -866 2067 127 3 0 chr4 73617701 73617993 -110670669 + AluSp SINE Alu 1 293 -20 3240 206 58 31 chr4 73617993 73618766 -110669896 + L1ME1 LINE L1 5318 6183 -1 2258 111 9 29 chr4 73618935 73619277 -110669385 + MER1B DNA MER1_type 1 335 -2 506 307 61 9 chr4 73619284 73619496 -110669166 - LTR16A LTR ERVL -22 428 206 1022 362 16 22 chr4 73619622 73620316 -110668346 - HERV16 LTR ERVL -1084 4680 3991 392 288 114 21 chr4 73620336 73620658 -110668004 - HERV16 LTR ERVL -1602 3394 3219 337 338 8 0 chr4 73620769 73620902 -110667760 - HERV16 LTR ERVL -2356 3408 3275 * 1778 308 24 42 chr4 73620894 73621706 -110666956 - HERV16 LTR ERVL -1906 3090 2392 1545 189 60 87 chr4 73621755 73622150 -110666512 - MLT1D LTR MaLR 0 505 126 1332 205 17 118 chr4 73622150 73622555 -110666107 + MLT1A1 LTR MaLR 2 365 0 1545 189 60 87 chr4 73622555 73622678 -110665984 - MLT1D LTR MaLR -379 126 1 2418 290 74 12 chr4 73622682 73623899 -110664763 - HERV16 LTR ERVL -3082 1914 559 587 270 33 7 chr4 73624107 73624259 -110664403 - MER5A DNA MER1_type 0 189 34 510 249 55 12 chr4 73624292 73624457 -110664205 - HERV16 LTR ERVL -4705 291 120 1763 97 66 69 chr4 73624575 73624864 -110663798 - AluSx SINE Alu -8 304 17 300 333 69 32 chr4 73624917 73625163 -110663499 - LTR16A LTR ERVL -102 348 94 30 45 0 0 chr4 73625322 73625366 -110663296 + AT_rich Low_complexity Low_complexity 1 44 0 416 359 40 5 chr4 73625504 73625727 -110662935 + HAL1 LINE L1 1475 1705 -802 367 256 62 106 chr4 73626465 73626852 -110661810 + L1M4 LINE L1 2219 2588 -3558 23 33 0 0 chr4 73627583 73627613 -110661049 + AT_rich Low_complexity Low_complexity 1 30 0 1809 167 0 7 chr4 73627613 73627901 -110660761 - AluJb SINE Alu -26 286 1 2510 40 0 46 chr4 73628385 73628710 -110659952 + AluY SINE Alu 1 310 -1 1681 128 4 27 chr4 73628842 73629099 -110659563 + AluSx SINE Alu 1 251 -61 3317 100 0 87 chr4 73629645 73630274 -110658388 + MER4B LTR ERV1 1 574 -36 2216 123 0 0 chr4 73630350 73630651 -110658011 - AluSx SINE Alu -11 301 1 1024 234 62 2 chr4 73631229 73631543 -110657119 + L1ME LINE L1 5256 5585 -579 348 359 21 14 chr4 73631560 73631705 -110656957 - L1MEc LINE L1 -2621 3594 3449 861 232 31 0 chr4 73631728 73631987 -110656675 - L1MEc LINE L1 -3213 3002 2736 346 271 23 23 chr4 73632024 73632157 -110656505 - L1MEc LINE L1 -6207 189 57 21 0 0 0 chr4 73632211 73632232 -110656430 + AT_rich Low_complexity Low_complexity 1 21 0 188 436 0 20 chr4 73632575 73632676 -110655986 - MIR SINE MIR -115 147 49 860 260 33 21 chr4 73633962 73634204 -110654458 - MIR SINE MIR -10 252 8 267 343 145 0 chr4 73634644 73634816 -110653846 + MIR SINE MIR 30 226 -36 243 323 89 16 chr4 73635217 73635341 -110653321 + MIR SINE MIR 22 154 -108 1229 134 5 0 chr4 73635341 73635535 -110653127 + MER2 DNA MER2_type 1 195 -150 462 268 123 25 chr4 73637801 73638036 -110650626 + L2 LINE L2 3004 3261 -52 361 286 88 60 chr4 73638197 73638289 -110650373 - L1ME4a LINE L1 0 6121 6033 482 232 18 27 chr4 73638289 73638401 -110650261 + MER81 DNA DNA 3 113 -1 361 286 88 60 chr4 73638401 73638626 -110650036 - L1ME4a LINE L1 -88 6033 5795 534 284 125 0 chr4 73638646 73638822 -110649840 + MIR SINE MIR 5 202 -60 400 316 77 24 chr4 73639021 73639230 -110649432 - L1ME4a LINE L1 -2335 5473 5254 322 318 163 22 chr4 73639246 73639646 -110649016 - L1ME4a LINE L1 -964 5182 4727 190 143 107 18 chr4 73639958 73640014 -110648648 - MIR SINE MIR -67 141 81 592 112 10 0 chr4 73640755 73640853 -110647809 - MLT2B1 LTR ERVL -2 513 415 * 2464 143 14 7 chr4 73640849 73641268 -110647394 - MSTA LTR MaLR -6 422 1 1538 184 57 0 chr4 73641268 73641622 -110647040 - MLT2B1 LTR ERVL -96 419 1 418 348 7 0 chr4 73642093 73642231 -110646431 + MIR SINE MIR 123 261 -1 422 320 111 51 chr4 73642254 73642588 -110646074 - L3b LINE CR1 -14 1569 1216 8719 111 10 39 chr4 73642791 73643784 -110644878 - THE1B-int LTR MaLR -218 1362 420 2377 107 3 0 chr4 73643784 73644093 -110644569 + AluSp SINE Alu 2 311 -2 8719 111 10 39 chr4 73644093 73644502 -110644160 - THE1B-int LTR MaLR -1160 420 1 2256 143 22 6 chr4 73644502 73644860 -110643802 - THE1B LTR MaLR 0 364 1 1362 216 41 41 chr4 73644931 73645296 -110643366 - MLT1A1 LTR MaLR 0 365 1 382 266 99 16 chr4 73645766 73645958 -110642704 + HAL1 LINE L1 1200 1407 -1100 350 274 23 15 chr4 73646023 73646197 -110642465 + HAL1 LINE L1 1644 1893 -614 2246 113 0 0 chr4 73646415 73646707 -110641955 - AluSq SINE Alu -21 292 1 364 271 6 96 chr4 73646757 73646934 -110641728 + HAL1b LINE L1 747 907 -441 350 291 89 39 chr4 73647236 73647415 -110641247 + HAL1 LINE L1 2237 2424 -83 600 40 0 0 chr4 73647680 73647755 -110640907 + (TCTCCC)n Simple_repeat Simple_repeat 3 77 0 1030 270 63 12 chr4 73649072 73649780 -110638882 - L1MEc LINE L1 -3605 3336 2631 264 122 0 0 chr4 73649884 73649933 -110638729 - L1MEc LINE L1 -4957 1466 1418 3203 112 2 4 chr4 73650323 73650807 -110637855 - L1PB1 LINE L1 -2 6149 5667 279 259 51 25 chr4 73650901 73651059 -110637603 - L1MEc LINE L1 -5956 975 814 1796 66 0 0 chr4 73651186 73651414 -110637248 + L1PA7 LINE L1 5923 6150 -4 374 156 0 0 chr4 73651607 73651671 -110636991 - L1PB1 LINE L1 -304 5847 5784 312 256 0 0 chr4 73651677 73651763 -110636899 + (CATA)n Simple_repeat Simple_repeat 2 87 0 227 284 23 0 chr4 73651763 73651851 -110636811 - L1MC4 LINE L1 -1339 6703 6614 * 520 94 0 0 chr4 73651843 73651925 -110636737 - L1P5 LINE L1 -361 5790 5709 473 262 33 16 chr4 73651926 73652048 -110636614 - MIR3 SINE MIR -39 169 46 489 228 160 11 chr4 73652162 73652443 -110636219 + L1MC5 LINE L1 7603 7925 -36 480 197 71 31 chr4 73653745 73653872 -110634790 - MIR SINE MIR -66 196 65 640 276 92 18 chr4 73654498 73654726 -110633936 - MIR SINE MIR -3 259 15 21 0 0 0 chr4 73654975 73654996 -110633666 + AT_rich Low_complexity Low_complexity 1 21 0 217 259 0 0 chr4 73655060 73655114 -110633548 + (TA)n Simple_repeat Simple_repeat 2 55 0 239 301 36 0 chr4 73655512 73655595 -110633067 + L2 LINE L2 3187 3272 0 497 307 28 0 chr4 73655770 73655919 -110632743 + MIR3 SINE MIR 51 203 -5 3257 197 19 15 chr4 73655988 73656637 -110632025 - MER82 DNA MER2_type 0 653 3 347 259 12 35 chr4 73656658 73656743 -110631919 + MER91C DNA MER1_type 58 140 0 202 289 0 0 chr4 73657178 73657230 -110631432 + GA-rich Low_complexity Low_complexity 3 54 0 180 0 0 0 chr4 73657497 73657517 -110631145 + (TAAAA)n Simple_repeat Simple_repeat 4 23 0 514 350 17 6 chr4 73657556 73657736 -110630926 + MIR SINE MIR 50 231 -31 1461 74 10 5 chr4 73658307 73658510 -110630152 + AluY SINE Alu 102 305 -6 2246 104 24 0 chr4 73658797 73659135 -110629527 - L1MA2 LINE L1 -7 6297 5952 509 167 21 0 chr4 73659235 73659331 -110629331 - L2 LINE L2 -541 2773 2676 480 248 152 19 chr4 73659971 73660281 -110628381 - L1ME4a LINE L1 -152 5969 5619 2247 125 0 0 chr4 73660281 73660578 -110628084 + AluSx SINE Alu 1 297 -15 289 231 96 39 chr4 73661375 73661479 -110627183 - L2 LINE L2 0 3272 3163 380 327 61 43 chr4 73663438 73663765 -110624897 + MLT1J LTR MaLR 106 438 -73 548 283 125 87 chr4 73663777 73664293 -110624369 - L2 LINE L2 -96 3176 2628 1076 127 5 171 chr4 73664295 73664674 -110623988 + MER33 DNA MER1_type 1 316 -8 300 375 0 0 chr4 73665439 73665607 -110623055 + (TGG)n Simple_repeat Simple_repeat 1 168 0 661 337 47 19 chr4 73666146 73666511 -110622151 - L2 LINE L2 -800 2514 2140 305 130 13 104 chr4 73666665 73666742 -110621920 - MER103 DNA DNA -52 114 45 192 200 0 0 chr4 73667775 73667815 -110620847 + (TA)n Simple_repeat Simple_repeat 2 41 0 189 286 253 0 chr4 73668299 73668390 -110620272 + L2 LINE L2 3197 3310 -3 208 329 14 43 chr4 73668692 73668762 -110619900 - L2 LINE L2 -6 3266 3199 210 307 51 81 chr4 73669002 73669298 -110619364 - L2 LINE L2 -345 2969 2683 7599 25 0 4 chr4 73669698 73671251 -110617411 + L1PA4 LINE L1 4604 6152 -3 22 0 0 0 chr4 73671251 73671273 -110617389 + AT_rich Low_complexity Low_complexity 1 22 0 583 293 170 42 chr4 73671273 73671340 -110617322 + L2 LINE L2 2349 2406 -908 252 0 0 0 chr4 73671340 73671368 -110617294 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 583 293 170 42 chr4 73671368 73671799 -110616863 + L2 LINE L2 2406 2911 -403 288 234 13 52 chr4 73671969 73672046 -110616616 + L2 LINE L2 3240 3313 0 3994 181 40 26 chr4 73672469 73673361 -110615301 + L1P LINE L1 11 915 -5231 12849 82 3 0 chr4 73673461 73675995 -110612667 + L1PA7 LINE L1 3611 6152 -2 306 333 53 13 chr4 73678156 73678321 -110610341 + MER5A DNA MER1_type 18 177 -1 3486 113 17 15 chr4 73678322 73678906 -110609756 + L1MA5A LINE L1 5692 6276 -21 252 264 0 0 chr4 73678913 73679000 -110609662 + L1M4 LINE L1 5188 5274 -872 40371 52 4 1 chr4 73679008 73684585 -110604077 + L1P2 LINE L1 1 5591 -564 459 181 0 51 chr4 73684696 73684834 -110603828 + C-rich Low_complexity Low_complexity 4 134 0 324 0 0 0 chr4 73684851 73684887 -110603775 + (CA)n Simple_repeat Simple_repeat 1 36 0 24 53 0 0 chr4 73686084 73686122 -110602540 + AT_rich Low_complexity Low_complexity 1 38 0 718 202 124 58 chr4 73686982 73687240 -110601422 + MER58B DNA MER1_type 14 288 -53 1682 164 44 0 chr4 73687648 73687922 -110600740 + AluJb SINE Alu 1 286 -26 370 254 73 27 chr4 73690413 73690523 -110598139 - MER117 DNA MER1_type -82 115 1 22 0 0 0 chr4 73690694 73690716 -110597946 + AT_rich Low_complexity Low_complexity 1 22 0 315 302 161 13 chr4 73691000 73691149 -110597513 + MIR SINE MIR 20 190 -72 309 237 43 0 chr4 73691151 73691244 -110597418 + (TA)n Simple_repeat Simple_repeat 2 98 0 1801 181 3 0 chr4 73691293 73691585 -110597077 - AluJb SINE Alu -19 293 1 220 412 11 11 chr4 73691895 73692077 -110596585 - MIR SINE MIR -33 229 48 379 285 62 14 chr4 73692107 73692251 -110596411 - MIR3 SINE MIR -39 169 19 665 279 113 37 chr4 73692603 73693768 -110594894 - L1MDa LINE L1 -4083 2638 1303 860 250 142 15 chr4 73693850 73694182 -110594480 - MER20B DNA MER1_type -394 389 16 192 167 119 0 chr4 73694692 73694734 -110593928 - L2 LINE L2 -4 3268 3222 529 324 67 9 chr4 73695543 73695753 -110592909 - MIR SINE MIR -4 258 37 448 325 43 6 chr4 73695846 73696009 -110592653 + MIR SINE MIR 20 188 -74 287 288 54 27 chr4 73696159 73696270 -110592392 - L2 LINE L2 -204 3068 2955 316 318 29 59 chr4 73696452 73696622 -110592040 + MIR SINE MIR 19 183 -79 2121 104 3 13 chr4 73697701 73698008 -110590654 - AluSg SINE Alu -4 306 3 243 256 136 15 chr4 73698058 73698257 -110590405 - L1ME4a LINE L1 -13 6108 5886 25 31 0 0 chr4 73698604 73698636 -110590026 + AT_rich Low_complexity Low_complexity 1 32 0 2454 71 0 0 chr4 73699044 73699340 -110589322 - AluY SINE Alu -15 296 1 763 288 34 0 chr4 73700326 73700562 -110588100 - MIR SINE MIR 0 262 19 411 259 43 50 chr4 73700531 73700670 -110587992 + MIR SINE MIR 37 174 -88 * 2495 71 0 0 chr4 73700969 73701280 -110587382 - AluY SINE Alu 0 311 1 1663 200 2 56 chr4 73701635 73702064 -110586598 - MLT2C1 LTR ERVL 0 520 1 1827 176 3 0 chr4 73702422 73702717 -110585945 + AluJb SINE Alu 1 296 -16 216 0 0 0 chr4 73703043 73703067 -110585595 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 766 74 37 0 chr4 73703091 73703199 -110585463 - L1PB1 LINE L1 -1 6150 6039 544 298 86 5 chr4 73704582 73704780 -110583882 - MIR SINE MIR -12 250 37 1139 218 80 7 chr4 73705622 73705911 -110582751 + MER58B DNA MER1_type 24 333 -8 1393 271 87 36 chr4 73705928 73706455 -110582207 + L2 LINE L2 2356 2909 -405 368 208 78 13 chr4 73706458 73706535 -110582127 - L2 LINE L2 -325 2988 2907 219 196 0 20 chr4 73706536 73706587 -110582075 + (TA)n Simple_repeat Simple_repeat 2 51 0 302 274 11 53 chr4 73706740 73706835 -110581827 + L2 LINE L2 3182 3272 0 1256 345 60 37 chr4 73706839 73707930 -110580732 - L2 LINE L2 -463 2851 1735 352 344 61 22 chr4 73708005 73708185 -110580477 + L2 LINE L2 3080 3266 -6 274 206 0 68 chr4 73708763 73708836 -110579826 + MIR3 SINE MIR 123 190 -18 468 330 63 16 chr4 73708885 73709076 -110579586 - MIR3 SINE MIR -5 203 4 2086 124 3 3 chr4 73709199 73709489 -110579173 - AluSx SINE Alu -22 290 1 199 265 0 0 chr4 73709886 73709935 -110578727 + MIR SINE MIR 139 187 -75 269 167 0 17 chr4 73709942 73710002 -110578660 + (TA)n Simple_repeat Simple_repeat 1 59 0 211 250 47 16 chr4 73710002 73710066 -110578596 + MIR SINE MIR 196 261 -1 267 203 0 0 chr4 73710409 73710468 -110578194 + (CATA)n Simple_repeat Simple_repeat 2 60 0 25 0 0 0 chr4 73710981 73711006 -110577656 + AT_rich Low_complexity Low_complexity 1 25 0 204 40 0 0 chr4 73711011 73711036 -110577626 + (CA)n Simple_repeat Simple_repeat 2 26 0 461 309 20 40 chr4 73712350 73712551 -110576111 - MIR SINE MIR -46 216 20 863 171 96 35 chr4 73712567 73712766 -110575896 - MER20 DNA MER1_type -6 213 3 192 318 16 0 chr4 73713711 73713774 -110574888 + L2 LINE L2 3248 3311 -2 300 53 0 0 chr4 73715802 73715840 -110572822 + (TA)n Simple_repeat Simple_repeat 2 39 0 2079 130 20 3 chr4 73716077 73716377 -110572285 - AluSx SINE Alu -7 305 1 235 276 0 0 chr4 73716476 73716534 -110572128 - MIR3 SINE MIR -21 187 130 419 245 161 44 chr4 73716884 73717157 -110571505 - L1ME4a LINE L1 0 6121 5817 22 56 0 0 chr4 73717595 73717631 -110571031 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr4 73717770 73717796 -110570866 + AT_rich Low_complexity Low_complexity 1 26 0 605 180 106 0 chr4 73718137 73718354 -110570308 - L1MA9 LINE L1 -16 6296 5961 381 297 7 35 chr4 73718401 73718546 -110570116 - MIR SINE MIR -67 195 55 189 74 0 0 chr4 73718672 73718699 -110569963 + (GA)n Simple_repeat Simple_repeat 1 27 0 4059 113 77 25 chr4 73719358 73720328 -110568334 - MER11A LTR ERVK 0 1266 1 241 189 57 0 chr4 73720450 73720503 -110568159 + L3 LINE CR1 1519 1574 -3 660 221 144 80 chr4 73721434 73721697 -110566965 - MER45C DNA AcHobo -2 951 672 613 199 110 22 chr4 73721808 73721944 -110566718 - MER45C DNA AcHobo -805 148 1 183 80 0 0 chr4 73723770 73723795 -110564867 + (CCA)n Simple_repeat Simple_repeat 1 25 0 529 234 110 28 chr4 73723797 73723942 -110564720 - MIR SINE MIR -18 244 88 294 325 29 57 chr4 73724767 73724812 -110563850 - HAL1b LINE L1 -711 637 592 2042 153 3 0 chr4 73724812 73725120 -110563542 + AluJb SINE Alu 1 309 -3 294 325 29 57 chr4 73725120 73725320 -110563342 - HAL1b LINE L1 -756 592 399 186 96 115 0 chr4 73725403 73725455 -110563207 + T-rich Low_complexity Low_complexity 4 61 0 12201 32 4 0 chr4 73725464 73727593 -110561069 - L1PA3 LINE L1 -5 6150 4017 303 271 95 95 chr4 73727594 73728048 -110560614 - HAL1 LINE L1 -1074 1433 980 975 226 112 70 chr4 73728151 73728677 -110559985 + MER39 LTR ERV1 1 564 -1 1292 206 14 5 chr4 73729591 73729810 -110558852 - MER58A DNA MER1_type -3 221 1 482 200 196 5 chr4 73731332 73731501 -110557161 + MIR SINE MIR 26 226 -36 228 67 0 0 chr4 73732416 73732446 -110556216 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 285 57 0 0 chr4 73732727 73732762 -110555900 + Charlie5 DNA MER1_type 2585 2619 0 708 290 52 4 chr4 73732818 73733066 -110555596 - MLT1L LTR MaLR -18 597 338 301 167 0 0 chr4 73733183 73733231 -110555431 - LTR67 LTR ERVL -409 148 101 203 182 45 0 chr4 73733332 73733376 -110555286 + L2 LINE L2 3264 3309 -4 199 350 80 0 chr4 73735938 73736038 -110552624 - L2 LINE L2 -61 3211 3104 282 442 0 0 chr4 73737415 73737501 -110551161 + C-rich Low_complexity Low_complexity 1 86 0 941 415 0 0 chr4 73737546 73737967 -110550695 + C-rich Low_complexity Low_complexity 1 421 0 8996 88 9 0 chr4 73738067 73739232 -110549430 - HERVK9 LTR ERVK -897 5019 3845 241 248 277 0 chr4 73739999 73740136 -110548526 + MLT1J LTR MaLR 72 246 -265 202 284 34 3 chr4 73740193 73740327 -110548335 + MER5A DNA MER1_type 9 178 0 425 94 31 0 chr4 73740422 73740486 -110548176 + MER58A DNA MER1_type 159 224 0 284 216 88 56 chr4 73740500 73740625 -110548037 + MLT1J LTR MaLR 334 462 -49 1950 132 3 24 chr4 73740781 73741077 -110547585 - AluJo SINE Alu -22 290 1 23 0 0 0 chr4 73741633 73741656 -110547006 + AT_rich Low_complexity Low_complexity 1 23 0 543 294 59 59 chr4 73742031 73742286 -110546376 - MIR SINE MIR -2 260 6 324 70 0 0 chr4 73743520 73743563 -110545099 + (TG)n Simple_repeat Simple_repeat 2 44 0 193 337 99 10 chr4 73743593 73743694 -110544968 + L2 LINE L2 3158 3267 -5 44124 30 21 2 chr4 73743755 73749789 -110538873 + L1HS LINE L1 2 6155 0 213 65 0 0 chr4 73749789 73749820 -110538842 + (A)n Simple_repeat Simple_repeat 1 31 0 253 237 72 21 chr4 73751024 73751121 -110537541 - L1ME4a LINE L1 -2 6119 6018 21 0 0 0 chr4 73751284 73751305 -110537357 + AT_rich Low_complexity Low_complexity 1 21 0 42777 62 2 1 chr4 73751365 73757510 -110531152 - L1PA5 LINE L1 -5 6149 1 33 25 0 0 chr4 73757731 73757771 -110530891 + AT_rich Low_complexity Low_complexity 1 40 0 2181 68 50 0 chr4 73757865 73758145 -110530517 - AluY SINE Alu -17 294 1 1045 292 90 34 chr4 73758880 73759658 -110529004 - L2 LINE L2 0 3313 2487 4262 165 21 3 chr4 73759876 73760574 -110528088 - MER44D DNA MER2_type 0 605 23 500 211 300 22 chr4 73760699 73760879 -110527783 + MIR SINE MIR 2 231 -31 307 315 69 39 chr4 73763205 73763335 -110525327 + MIR SINE MIR 74 207 -55 207 0 0 0 chr4 73764276 73764299 -110524363 + (T)n Simple_repeat Simple_repeat 1 23 0 500 311 0 0 chr4 73764957 73765089 -110523573 - MIR3 SINE MIR -13 195 64 1350 94 0 0 chr4 73765255 73765426 -110523236 + AluSg/x SINE Alu 132 302 -10 2076 127 3 3 chr4 73765478 73765770 -110522892 - AluSx SINE Alu -12 300 9 418 301 0 42 chr4 73765788 73765931 -110522731 + MIR SINE MIR 126 262 0 977 221 86 0 chr4 73766096 73766318 -110522344 + MIR SINE MIR 20 260 -2 21 0 0 0 chr4 73766834 73766855 -110521807 + AT_rich Low_complexity Low_complexity 1 21 0 2131 121 84 28 chr4 73767023 73767192 -110521470 - THE1C LTR MaLR 0 375 217 201 39 0 0 chr4 73767192 73767218 -110521444 + (GA)n Simple_repeat Simple_repeat 1 26 0 2131 121 84 28 chr4 73767218 73767403 -110521259 - THE1C LTR MaLR -158 217 1 246 179 0 0 chr4 73770432 73770471 -110518191 + MIR SINE MIR 13 51 -211 2212 112 23 0 chr4 73770480 73770796 -110517866 - AluSx SINE Alu 0 323 1 1662 104 5 0 chr4 73770901 73771112 -110517550 - AluSq SINE Alu -101 212 1 361 276 138 56 chr4 73771113 73771262 -110517400 + MIR SINE MIR 41 211 -51 1783 157 93 16 chr4 73771262 73771575 -110517087 - MER1B DNA MER1_type 0 337 1 361 276 138 56 chr4 73771575 73771621 -110517041 + MIR SINE MIR 211 252 -10 205 288 25 75 chr4 73771699 73771779 -110516883 - L2 LINE L2 -47 3225 3150 463 327 55 15 chr4 73771948 73772147 -110516515 + MIR SINE MIR 53 259 -3 465 242 36 52 chr4 73773047 73773241 -110515421 - L2 LINE L2 0 3313 3123 277 234 77 99 chr4 73774884 73775106 -110513556 - L1ME4a LINE L1 -22 6099 5883 845 282 87 31 chr4 73775111 73775526 -110513136 - L1ME4a LINE L1 -273 5848 5411 2052 135 0 26 chr4 73775787 73776099 -110512563 - AluSx SINE Alu -8 304 1 311 211 0 79 chr4 73776954 73777030 -110511632 - MIR SINE MIR -91 171 102 331 235 0 12 chr4 73777964 73778045 -110510617 + L1MA9 LINE L1 6119 6198 -114 252 0 0 0 chr4 73778050 73778078 -110510584 + (TC)n Simple_repeat Simple_repeat 2 29 0 298 212 61 12 chr4 73778078 73778243 -110510419 + (TA)n Simple_repeat Simple_repeat 2 174 0 222 261 52 8 chr4 73778270 73778404 -110510258 + (TA)n Simple_repeat Simple_repeat 1 140 0 301 325 12 0 chr4 73778802 73778885 -110509777 - L2 LINE L2 -3 3310 3227 254 318 143 21 chr4 73779689 73779878 -110508784 + L2 LINE L2 2667 2878 -436 293 215 0 51 chr4 73780447 73780526 -110508136 - L2 LINE L2 -73 3240 3166 * 400 321 73 43 chr4 73780524 73780923 -110507739 + L2 LINE L2 2552 2962 -352 42746 40 24 4 chr4 73781900 73787928 -110500734 - L1PA3 LINE L1 0 6155 1 217 284 104 35 chr4 73788410 73788609 -110500053 - MIR SINE MIR -53 209 2 252 222 19 0 chr4 73788759 73788813 -110499849 - MIR SINE MIR -21 241 187 605 263 40 29 chr4 73788839 73788914 -110499748 + MIR SINE MIR 83 156 -106 2168 197 62 25 chr4 73788914 73789401 -110499261 + MLT1D LTR MaLR 1 505 0 605 263 40 29 chr4 73789401 73789500 -110499162 + MIR SINE MIR 156 259 -3 * 681 246 88 5 chr4 73789446 73789666 -110498996 - MIR SINE MIR -21 241 4 184 203 51 0 chr4 73791196 73791255 -110497407 + CT-rich Low_complexity Low_complexity 2 63 0 549 289 109 41 chr4 73791613 73792225 -110496437 - L1M2 LINE L1 -654 5658 4948 306 0 0 0 chr4 73792225 73792259 -110496403 + (TA)n Simple_repeat Simple_repeat 2 35 0 549 289 109 41 chr4 73792259 73792556 -110496106 - L1M2 LINE L1 -1364 4948 4673 1892 170 0 19 chr4 73792605 73792916 -110495746 + AluJb SINE Alu 3 307 -5 357 82 0 0 chr4 73792916 73792965 -110495697 + (GA)n Simple_repeat Simple_repeat 1 49 0 228 290 0 0 chr4 73792972 73793041 -110495621 - L1M4 LINE L1 -1536 4610 4542 249 279 211 60 chr4 73793955 73794525 -110494137 + L2 LINE L2 1867 2522 -792 198 281 96 59 chr4 73794528 73794663 -110493999 + L2 LINE L2 2625 2764 -550 258 331 82 5 chr4 73794726 73794910 -110493752 + L2 LINE L2 2862 3059 -213 523 176 20 0 chr4 73795257 73795359 -110493303 - MER53 DNA DNA -84 105 2 422 290 48 38 chr4 73796807 73796993 -110491669 - MIR3 SINE MIR -6 202 15 599 283 33 16 chr4 73797016 73797200 -110491462 + MIR SINE MIR 32 218 -44 309 277 88 34 chr4 73799693 73799841 -110488821 - L1ME4a LINE L1 -81 6040 5885 261 119 0 0 chr4 73800703 73800745 -110487917 + (TC)n Simple_repeat Simple_repeat 1 42 0 439 285 95 59 chr4 73801193 73801446 -110487216 - MIR SINE MIR 0 262 1 2076 102 27 10 chr4 73801625 73801920 -110486742 + AluSx SINE Alu 1 300 -12 269 302 58 0 chr4 73802086 73802172 -110486490 - MIR SINE MIR -88 174 84 195 100 0 0 chr4 73802434 73802464 -110486198 + (TG)n Simple_repeat Simple_repeat 1 30 0 2176 4 0 0 chr4 73802632 73802863 -110485799 - AluYa5 SINE Alu -1 310 80 559 266 25 38 chr4 73803084 73803242 -110485420 - L2 LINE L2 0 3313 3158 220 247 93 21 chr4 73803905 73804002 -110484660 - MER91C DNA MER1_type -34 106 3 457 200 0 10 chr4 73804237 73804337 -110484325 - MER5A DNA MER1_type -87 102 4 677 157 126 6 chr4 73804518 73804677 -110483985 + MER53 DNA DNA 10 187 -2 207 0 0 0 chr4 73805002 73805025 -110483637 + (T)n Simple_repeat Simple_repeat 1 23 0 741 305 91 57 chr4 73805917 73806755 -110481907 - L2 LINE L2 -50 3222 2356 282 348 105 11 chr4 73806811 73807087 -110481575 - L2 LINE L2 -921 2393 2092 195 343 28 98 chr4 73807180 73807323 -110481339 - L2 LINE L2 -3 3269 3137 758 273 11 0 chr4 73807357 73807533 -110481129 + AluJo SINE Alu 122 299 -13 3361 61 15 0 chr4 73808959 73809369 -110479293 + HERVK11 LTR ERVK 6350 6765 -1188 * 8312 58 3 0 chr4 73809353 73810350 -110478312 + HERVK11 LTR ERVK 6954 7953 0 9316 52 6 2 chr4 73810350 73811417 -110477245 + MER11C LTR ERVK 1 1071 0 26 30 0 0 chr4 73811426 73811459 -110477203 + AT_rich Low_complexity Low_complexity 1 33 0 183 269 77 19 chr4 73812022 73812074 -110476588 + L2 LINE L2 3203 3257 -56 2781 204 49 2 chr4 73812126 73812659 -110476003 - MER74A LTR ERVL 0 558 1 572 304 41 0 chr4 73812802 73812973 -110475689 - MIR SINE MIR -4 258 81 228 35 0 0 chr4 73814093 73814122 -110474540 + (GA)n Simple_repeat Simple_repeat 2 30 0 1381 180 63 20 chr4 73814132 73814387 -110474275 - AluJb SINE Alu -46 266 1 255 314 29 51 chr4 73814419 73814594 -110474068 - L1ME4a LINE L1 -5 6116 5946 2319 110 3 0 chr4 73814658 73814966 -110473696 - AluSc SINE Alu 0 309 1 1701 181 3 16 chr4 73815054 73815358 -110473304 - AluJo SINE Alu -12 300 1 355 233 81 0 chr4 73815450 73815536 -110473126 - MLT1G LTR MaLR 0 555 463 718 280 62 31 chr4 73815579 73815868 -110472794 - MLT1G LTR MaLR -255 335 38 213 301 114 41 chr4 73818674 73818797 -110469865 - L2 LINE L2 0 3313 3182 193 296 111 43 chr4 73820063 73820225 -110468437 - L2 LINE L2 -518 2796 2624 387 258 45 0 chr4 73820800 73820889 -110467773 - L2 LINE L2 -8 3264 3172 2152 164 26 26 chr4 73820920 73821309 -110467353 - MLT1B LTR MaLR -1 389 1 183 308 44 44 chr4 73821438 73821529 -110467133 - L2 LINE L2 -224 3048 2958 271 197 66 13 chr4 73821854 73821930 -110466732 - MER116 DNA Mariner 0 80 1 247 345 63 24 chr4 73821930 73822136 -110466526 - L2 LINE L2 -790 2524 2311 180 0 0 0 chr4 73823368 73823388 -110465274 + (CAAAAA)n Simple_repeat Simple_repeat 5 24 0 492 246 0 0 chr4 73823395 73823505 -110465157 + MER103 DNA DNA 8 117 -49 219 69 0 0 chr4 73823712 73823741 -110464921 + (TCCC)n Simple_repeat Simple_repeat 4 32 0 673 284 44 32 chr4 73824478 73824728 -110463934 - MIR SINE MIR 0 262 10 21 0 0 0 chr4 73826054 73826075 -110462587 + AT_rich Low_complexity Low_complexity 1 21 0 528 302 59 59 chr4 73826450 73826705 -110461957 - MIR SINE MIR -2 260 6 324 70 0 0 chr4 73827939 73827982 -110460680 + (TG)n Simple_repeat Simple_repeat 2 44 0 193 337 99 10 chr4 73828010 73828111 -110460551 + L2 LINE L2 3158 3267 -5 225 65 0 0 chr4 73830985 73831016 -110457646 + (CA)n Simple_repeat Simple_repeat 2 32 0 234 380 43 21 chr4 73831136 73831370 -110457292 + L2 LINE L2 2872 3110 -162 1476 208 7 3 chr4 73831735 73832029 -110456633 + AluJo SINE Alu 1 295 -17 305 314 57 38 chr4 73832333 73832543 -110456119 + L1ME4a LINE L1 5388 5601 -520 395 274 103 29 chr4 73832578 73832753 -110455909 + MIR SINE MIR 64 251 -11 512 271 116 52 chr4 73832799 73833239 -110455423 + L1ME4a LINE L1 5654 6121 0 1160 243 0 0 chr4 73836455 73836673 -110451989 - LTR28 LTR ERV1 0 1020 803 1893 186 110 33 chr4 73836691 73837233 -110451429 - LTR28 LTR ERV1 -387 633 1 358 294 47 7 chr4 73838368 73838520 -110450142 + MIR3 SINE MIR 46 202 -6 613 279 31 6 chr4 73838986 73839147 -110449515 + MIR SINE MIR 12 176 -86 201 39 0 0 chr4 73839850 73839876 -110448786 + (A)n Simple_repeat Simple_repeat 1 26 0 1537 107 0 19 chr4 73839876 73840092 -110448570 + AluSg/x SINE Alu 84 295 -15 1711 161 13 26 chr4 73841235 73841540 -110447122 + AluJb SINE Alu 1 301 -11 879 350 32 39 chr4 73841702 73842237 -110446425 - L3 LINE CR1 -620 957 427 347 333 20 33 chr4 73842625 73842775 -110445887 - L2 LINE L2 -1 3312 3165 393 208 40 87 chr4 73842868 73843041 -110445621 + L1MEd LINE L1 1050 1214 -4905 728 304 46 29 chr4 73843070 73843419 -110445243 - L2 LINE L2 -592 2722 2368 201 273 36 0 chr4 73844265 73844320 -110444342 - L2 LINE L2 0 3313 3257 473 259 44 93 chr4 73844337 73844542 -110444120 + MER102a DNA MER1_type 1 195 -135 280 314 21 90 chr4 73844544 73844732 -110443930 + MER102a DNA MER1_type 151 325 -5 219 88 0 0 chr4 73845185 73845219 -110443443 + (T)n Simple_repeat Simple_repeat 1 34 0 591 282 28 59 chr4 73845570 73845825 -110442837 - MIR SINE MIR -10 252 6 252 241 0 0 chr4 73845924 73845982 -110442680 + (CAA)n Simple_repeat Simple_repeat 2 59 0 257 291 39 19 chr4 73846000 73846103 -110442559 - MER5B DNA MER1_type -69 109 5 369 0 0 0 chr4 73847559 73847600 -110441062 + (TAA)n Simple_repeat Simple_repeat 1 41 0 2012 108 21 4 chr4 73847608 73847915 -110440747 + AluSp SINE Alu 1 312 0 411 309 50 7 chr4 73847983 73848122 -110440540 - MIR3 SINE MIR -56 152 8 706 251 78 9 chr4 73849360 73849579 -110439083 - MIR SINE MIR -17 245 12 2062 129 98 0 chr4 73850303 73850620 -110438042 - MER7A DNA MER2_type 0 346 1 29 0 0 0 chr4 73850627 73850656 -110438006 + AT_rich Low_complexity Low_complexity 1 29 0 2216 103 0 10 chr4 73850821 73851111 -110437551 + AluSx SINE Alu 1 287 -25 507 266 42 14 chr4 73851877 73852020 -110436642 + MER5B DNA MER1_type 3 149 -29 4630 154 64 10 chr4 73852026 73853134 -110435528 - L1MB7 LINE L1 -17 6167 4998 550 271 187 5 chr4 73855031 73855245 -110433417 - MIR SINE MIR 0 262 10 1796 155 52 0 chr4 73855431 73855702 -110432960 - AluSx SINE Alu -27 285 1 45 34 0 0 chr4 73856390 73856449 -110432213 + AT_rich Low_complexity Low_complexity 1 59 0 1192 212 86 40 chr4 73856764 73857090 -110431572 - L1ME1 LINE L1 -5 6161 5821 247 248 31 115 chr4 73857285 73857511 -110431151 - MLT1K LTR MaLR -2 586 380 715 314 76 0 chr4 73858438 73858674 -110429988 - MIR SINE MIR -3 259 6 1793 164 0 44 chr4 73858724 73859042 -110429620 + AluJb SINE Alu 1 304 -8 22 35 0 0 chr4 73859679 73859708 -110428954 + AT_rich Low_complexity Low_complexity 1 29 0 2275 101 3 0 chr4 73859716 73860013 -110428649 + AluSx SINE Alu 1 298 -14 21 0 0 0 chr4 73860268 73860289 -110428373 + AT_rich Low_complexity Low_complexity 1 21 0 2583 58 0 6 chr4 73862156 73862468 -110426194 + AluY SINE Alu 1 310 -1 1566 218 0 32 chr4 73862628 73862936 -110425726 + AluJb SINE Alu 1 298 -14 452 134 21 21 chr4 73862956 73863053 -110425609 + MER113 DNA MER1_type? 19 115 -406 512 319 43 11 chr4 73864393 73864581 -110424081 - MIR SINE MIR -34 228 35 23 0 0 0 chr4 73867121 73867144 -110421518 + AT_rich Low_complexity Low_complexity 1 23 0 5817 166 54 54 chr4 73867149 73869323 -110419339 - L1MA9 LINE L1 -9 7722 5549 2507 239 47 17 chr4 73869323 73870710 -110417952 - L1MA9 LINE L1 -3348 4217 2785 4430 242 62 42 chr4 73870712 73872223 -110416439 - L1MA9 LINE L1 -4589 2907 1366 378 182 40 71 chr4 73872431 73872530 -110416132 - MER5A DNA MER1_type -54 135 40 218 274 35 97 chr4 73872433 73872546 -110416116 + MER5A DNA MER1_type 68 173 -16 * 2183 117 7 0 chr4 73872815 73873106 -110415556 + AluSq SINE Alu 1 293 -20 361 348 98 79 chr4 73874100 73874519 -110414143 + L2 LINE L2 2838 3264 -8 211 234 0 0 chr4 73874636 73874683 -110413979 + (TA)n Simple_repeat Simple_repeat 1 47 0 677 293 59 54 chr4 73875420 73876315 -110412347 + L1MEd LINE L1 4 932 -5187 2072 167 103 16 chr4 73876427 73876938 -110411724 - L1MD1 LINE L1 -54 7750 6083 222 235 20 0 chr4 73876964 73877015 -110411647 + MIR3 SINE MIR 150 201 -7 1430 153 188 0 chr4 73877565 73877873 -110410789 - MER47A DNA MER2_type 0 366 1 272 351 94 19 chr4 73878347 73878655 -110410007 + L2 LINE L2 2307 2637 -677 230 346 0 58 chr4 73878848 73878952 -110409710 + L2 LINE L2 3170 3267 -5 225 132 0 0 chr4 73879595 73879633 -110409029 + (TCTCCC)n Simple_repeat Simple_repeat 5 42 0 335 308 48 0 chr4 73880041 73880145 -110408517 + MIR SINE MIR 51 159 -103 2828 73 3 0 chr4 73880176 73880530 -110408132 - THE1A LTR MaLR 0 355 1 274 271 161 8 chr4 73880537 73880655 -110408007 - MIR SINE MIR -76 186 51 1975 127 71 6 chr4 73880709 73881048 -110407614 + MER46B DNA MER2_type 1 236 0 1739 144 59 35 chr4 73881821 73882161 -110406501 - THE1B LTR MaLR -1 363 16 685 265 128 23 chr4 73882409 73882628 -110406034 + MIR SINE MIR 19 260 -2 1724 137 59 42 chr4 73882705 73883012 -110405650 + AluJb SINE Alu 1 312 0 315 291 71 56 chr4 73883012 73883545 -110405117 + L1M4 LINE L1 2761 3301 -2845 25 65 0 0 chr4 73884142 73884188 -110404474 + AT_rich Low_complexity Low_complexity 1 46 0 238 271 29 0 chr4 73884188 73884258 -110404404 - L1M4 LINE L1 -1236 4910 4839 186 160 0 0 chr4 73884259 73884309 -110404353 + A-rich Low_complexity Low_complexity 1 50 0 624 280 148 20 chr4 73884403 73884760 -110403902 - MARNA DNA Mariner -143 443 41 2407 82 3 3 chr4 73884972 73885275 -110403387 - AluSq SINE Alu -10 303 1 513 313 77 0 chr4 73885742 73885924 -110402738 + MIR SINE MIR 67 262 0 331 310 69 15 chr4 73886373 73886576 -110402086 + L1ME4a LINE L1 5757 5970 -151 188 330 10 41 chr4 73887125 73887222 -110401440 - L3 LINE CR1 -15 1562 1469 221 311 20 125 chr4 73887361 73887609 -110401053 - L2 LINE L2 -225 3047 2826 417 323 46 73 chr4 73888599 73888859 -110399803 - L2 LINE L2 -6 3266 3014 278 226 32 0 chr4 73888881 73888943 -110399719 - MER5A DNA MER1_type 0 189 126 1116 60 0 7 chr4 73888944 73889095 -110399567 - L1PB1 LINE L1 -138 6013 5864 922 117 0 14 chr4 73889095 73889239 -110399423 + L1PB1 LINE L1 6008 6150 -1 25 0 0 0 chr4 73889239 73889264 -110399398 + AT_rich Low_complexity Low_complexity 1 25 0 684 171 29 29 chr4 73889264 73889404 -110399258 - MER5A DNA MER1_type -49 140 1 518 330 88 54 chr4 73889418 73889806 -110398856 - L2 LINE L2 -337 2977 2577 2069 160 20 68 chr4 73889819 73890306 -110398356 + L1MB2 LINE L1 5669 6132 -39 846 239 142 3 chr4 73890487 73890805 -110397857 - L2 LINE L2 -430 2884 2523 402 98 76 54 chr4 73892331 73892423 -110396239 + FRAM SINE Alu 67 160 -16 2142 123 95 18 chr4 73893511 73893760 -110394902 - MSTA LTR MaLR 0 428 137 198 0 0 0 chr4 73893760 73893782 -110394880 + (CTCA)n Simple_repeat Simple_repeat 3 24 0 2142 123 95 18 chr4 73893782 73893922 -110394740 - MSTA LTR MaLR -291 137 9 3007 76 26 67 chr4 73894704 73894746 -110393916 - MLT2A1 LTR ERVL 0 444 402 408 20 0 0 chr4 73894746 73894795 -110393867 + (TA)n Simple_repeat Simple_repeat 2 50 0 3007 76 26 67 chr4 73894795 73895022 -110393640 - MLT2A1 LTR ERVL -42 402 199 2248 106 0 0 chr4 73895022 73895314 -110393348 - AluSq SINE Alu -21 292 1 3007 76 26 67 chr4 73895314 73895506 -110393156 - MLT2A1 LTR ERVL -245 199 1 368 317 0 10 chr4 73896070 73896174 -110392488 - L2 LINE L2 -3 3269 3167 246 290 80 95 chr4 73896400 73896738 -110391924 - L2 LINE L2 -380 2934 2602 2230 104 40 0 chr4 73897021 73897319 -110391343 - AluSg SINE Alu 0 310 1 1448 197 56 3 chr4 73898527 73898811 -110389851 + AluJo SINE Alu 1 299 -13 220 236 274 0 chr4 73898861 73898967 -110389695 + MIR SINE MIR 11 145 -117 279 0 0 0 chr4 73898967 73898998 -110389664 + (TAA)n Simple_repeat Simple_repeat 3 33 0 26 88 0 0 chr4 73899589 73899657 -110389005 + AT_rich Low_complexity Low_complexity 1 68 0 883 159 8 6 chr4 73899720 73899964 -110388698 + AluJb SINE Alu 1 291 -21 204 304 63 13 chr4 73900789 73900868 -110387794 + MIR3 SINE MIR 72 154 -54 2361 162 36 0 chr4 73900888 73901301 -110387361 + MSTC LTR MaLR 1 428 0 2187 98 0 7 chr4 73902193 73902490 -110386172 - AluY SINE Alu -16 295 1 324 94 0 0 chr4 73902893 73902946 -110385716 + (TG)n Simple_repeat Simple_repeat 1 53 0 24 32 0 0 chr4 73904809 73904840 -110383822 + AT_rich Low_complexity Low_complexity 1 31 0 345 245 137 38 chr4 73904875 73905087 -110383575 - MARNA DNA Mariner -38 548 316 22 35 0 0 chr4 73905592 73905621 -110383041 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr4 73905731 73905760 -110382902 + AT_rich Low_complexity Low_complexity 1 29 0 626 310 107 8 chr4 73905855 73906116 -110382546 + L3 LINE CR1 1263 1549 -28 615 257 8 2 chr4 73908192 73908340 -110380322 + MIR SINE MIR 7 152 -59 555 281 55 36 chr4 73908483 73908921 -110379741 + L1ME3A LINE L1 4213 4658 -1488 1145 157 9 52 chr4 73908925 73909163 -110379499 + AluJb SINE Alu 84 312 0 1109 281 96 20 chr4 73909260 73909324 -110379338 + L1ME3A LINE L1 4805 4863 -1307 2120 141 3 0 chr4 73909324 73909621 -110379041 + AluSx SINE Alu 1 298 -14 1109 281 96 20 chr4 73909621 73910581 -110378081 + L1ME3A LINE L1 4863 5902 -268 185 235 157 0 chr4 73912507 73912558 -110376104 - L3 LINE CR1 -3 1574 1516 204 317 176 42 chr4 73913142 73913284 -110375378 - L2 LINE L2 -2 3270 3110 364 269 32 0 chr4 73913379 73913472 -110375190 + MIR SINE MIR 39 134 -128 22 0 0 0 chr4 73913472 73913494 -110375168 + AT_rich Low_complexity Low_complexity 1 22 0 631 248 0 8 chr4 73913530 73913663 -110374999 - FLAM_A SINE Alu -1 132 1 2861 13 0 6 chr4 73913882 73914200 -110374462 - AluYb8 SINE Alu -2 316 1 564 247 36 96 chr4 73915308 73915559 -110373103 - L2 LINE L2 -1 3312 3077 325 297 54 92 chr4 73916174 73916413 -110372249 - L2 LINE L2 -126 3146 2917 897 193 10 31 chr4 73916578 73916770 -110371892 - MER5A DNA MER1_type -1 188 1 1897 154 0 29 chr4 73916935 73917241 -110371421 + AluJo SINE Alu 1 297 -15 1910 159 0 20 chr4 73917722 73918023 -110370639 - AluJb SINE Alu -17 295 1 1830 199 53 26 chr4 73922909 73923325 -110365337 - LTR40c LTR ERVL 0 465 39 218 217 0 0 chr4 73924330 73924376 -110364286 + T-rich Low_complexity Low_complexity 1 46 0 196 358 60 0 chr4 73926352 73926419 -110362243 + L2 LINE L2 3193 3263 -9 191 297 95 40 chr4 73926684 73926758 -110361904 - L2 LINE L2 -86 3186 3109 188 326 135 57 chr4 73926912 73927384 -110361278 - L2 LINE L2 -341 2931 2419 1575 156 52 48 chr4 73927416 73927705 -110360957 + AluJo SINE Alu 1 290 -22 897 273 88 58 chr4 73927840 73928250 -110360412 - L2 LINE L2 -81 3232 2811 274 146 0 0 chr4 73929125 73929166 -110359496 + AluSc SINE Alu 106 146 -153 250 233 67 50 chr4 73929771 73929891 -110358771 - MLT1J1 LTR MaLR 0 446 325 376 313 98 41 chr4 73929891 73930046 -110358616 - MLT1J LTR MaLR -170 341 196 2141 145 3 0 chr4 73930046 73930357 -110358305 - AluSx SINE Alu 0 312 1 376 313 98 41 chr4 73930357 73930517 -110358145 - MLT1J LTR MaLR -315 196 8 256 300 20 30 chr4 73930624 73930724 -110357938 + MER20 DNA MER1_type 102 200 -19 1432 156 62 0 chr4 73932374 73932617 -110356045 + L1PA16 LINE L1 5891 6148 -18 225 219 0 0 chr4 73932908 73932949 -110355713 + MER5B DNA MER1_type 1 41 -137 455 221 25 76 chr4 73932959 73933117 -110355545 + MER5B DNA MER1_type 19 168 -10 205 237 0 0 chr4 73933154 73933192 -110355470 + polypyrimidine Low_complexity Low_complexity 1 38 0 191 138 0 0 chr4 73933192 73933221 -110355441 - L2 LINE L2 -9 3263 3235 1939 161 161 24 chr4 73933554 73933963 -110354699 - MLT1C LTR MaLR -2 465 1 2112 133 70 21 chr4 73934468 73934799 -110353863 - MER7A DNA MER2_type -1 345 1 437 259 62 0 chr4 73934848 73934960 -110353702 - L2 LINE L2 -4 3309 3191 528 294 26 61 chr4 73935269 73935500 -110353162 + MIR SINE MIR 24 246 -16 950 207 11 5 chr4 73935546 73935734 -110352928 + L1ME1 LINE L1 5522 5710 -456 578 222 49 127 chr4 73935743 73936003 -110352659 + L1ME1 LINE L1 5866 6098 -68 2143 126 0 22 chr4 73936003 73936321 -110352341 + AluSx SINE Alu 2 312 0 578 222 49 127 chr4 73936321 73936384 -110352278 + L1ME1 LINE L1 6098 6164 -2 1033 300 55 43 chr4 73939111 73939682 -110348980 - L2 LINE L2 0 3313 2730 635 285 79 5 chr4 73940403 73940617 -110348045 + MIR SINE MIR 21 250 -12 26 30 0 0 chr4 73940823 73940856 -110347806 + AT_rich Low_complexity Low_complexity 1 33 0 7524 117 13 0 chr4 73940856 73942214 -110346448 - L1MA2 LINE L1 0 6304 4928 329 315 210 0 chr4 73942227 73942389 -110346273 + MIR SINE MIR 53 248 -14 324 0 0 0 chr4 73942402 73942438 -110346224 + (CAT)n Simple_repeat Simple_repeat 1 36 0 212 0 36 0 chr4 73943652 73943680 -110344982 + (TTG)n Simple_repeat Simple_repeat 2 30 0 353 253 89 75 chr4 73944220 73944366 -110344296 - MLT1J LTR MaLR -36 475 328 440 198 0 25 chr4 73944421 73944502 -110344160 - MER2 DNA MER2_type 0 345 267 2162 112 0 10 chr4 73944671 73944966 -110343696 + AluSq SINE Alu 1 292 -21 306 372 33 0 chr4 73945460 73945581 -110343081 - L2 LINE L2 -5 3267 3143 792 235 63 59 chr4 73945781 73946036 -110342626 + MIR SINE MIR 4 259 -3 457 321 73 24 chr4 73946325 73946555 -110342107 - MIR SINE MIR -10 252 10 321 172 0 189 chr4 73949155 73949277 -110339385 + MIR SINE MIR 164 262 0 336 352 68 0 chr4 73949905 73950081 -110338581 + MIR SINE MIR 20 207 -55 22 56 0 0 chr4 73950366 73950402 -110338260 + AT_rich Low_complexity Low_complexity 1 36 0 203 340 20 106 chr4 73952457 73952760 -110335902 - L2 LINE L2 -1 3271 2995 460 309 17 22 chr4 73952931 73953109 -110335553 - L2 LINE L2 -1317 1997 1821 1370 144 14 0 chr4 73953772 73953980 -110334682 + AluJo SINE Alu 1 211 -101 483 284 209 5 chr4 73954198 73954399 -110334263 - MIR SINE MIR -10 252 11 195 250 0 96 chr4 73954443 73954495 -110334167 + L2 LINE L2 3245 3291 -22 354 282 109 18 chr4 73954592 73954702 -110333960 - MIR SINE MIR -111 151 32 1866 187 0 0 chr4 73954712 73955017 -110333645 + AluJo SINE Alu 1 305 -7 611 245 43 12 chr4 73955164 73955327 -110333335 + MIR SINE MIR 87 254 -8 355 293 84 58 chr4 73956020 73956211 -110332451 + MIR SINE MIR 18 213 -49 185 280 0 0 chr4 73956259 73956309 -110332353 + L2 LINE L2 3262 3311 -2 506 333 12 0 chr4 73956527 73956695 -110331967 + MIR SINE MIR 93 262 0 3558 125 61 2 chr4 73957244 73957771 -110330891 + LTR64 LTR ERVK 1 558 0 231 274 20 49 chr4 73957773 73957875 -110330787 + L1ME4a LINE L1 5967 6065 -56 593 138 198 52 chr4 73958164 73958280 -110330382 - FLAM_C SINE Alu 0 133 1 313 245 29 29 chr4 73959373 73959475 -110329187 + MIR SINE MIR 68 169 -93 331 265 176 0 chr4 73959910 73960046 -110328616 - MIR SINE MIR 0 262 103 279 309 32 0 chr4 73961131 73961225 -110327437 + MIR SINE MIR 58 154 -108 231 315 42 77 chr4 73961233 73961327 -110327335 - L2 LINE L2 0 3313 3224 2357 100 0 0 chr4 73961327 73961627 -110327035 + AluSx SINE Alu 1 300 -12 231 315 42 77 chr4 73961627 73961675 -110326987 - L2 LINE L2 -89 3224 3176 194 125 0 0 chr4 73961709 73961741 -110326921 - MIR SINE MIR -66 196 165 263 281 0 0 chr4 73961972 73962036 -110326626 + L2 LINE L2 3245 3308 -5 360 314 75 13 chr4 73962367 73962526 -110326136 + MIR SINE MIR 53 221 -41 987 268 74 8 chr4 73962630 73962981 -110325681 + LTR16C LTR ERVL 45 418 -73 210 259 0 0 chr4 73963327 73963381 -110325281 + GA-rich Low_complexity Low_complexity 1 54 0 1762 187 26 17 chr4 73964107 73964489 -110324173 + MLT2D LTR ERVL 1 480 -40 233 189 28 9 chr4 73964516 73964622 -110324040 + (TA)n Simple_repeat Simple_repeat 1 108 0 380 231 30 0 chr4 73964633 73964802 -110323860 + (TA)n Simple_repeat Simple_repeat 1 174 0 2322 90 11 41 chr4 73964810 73965176 -110323486 + L1PB1 LINE L1 5797 6151 0 560 170 54 0 chr4 73965187 73965299 -110323363 - ORSL DNA AcHobo -157 118 1 1103 258 168 19 chr4 73965908 73966331 -110322331 + L2 LINE L2 2828 3313 0 234 245 264 57 chr4 73966532 73966638 -110322024 - MIR3 SINE MIR -66 142 15 2172 125 10 0 chr4 73966643 73966946 -110321716 - AluSc SINE Alu -2 307 2 26 0 0 0 chr4 73967049 73967075 -110321587 + AT_rich Low_complexity Low_complexity 1 26 0 323 130 19 0 chr4 73967075 73967129 -110321533 - AluJb SINE Alu -173 129 75 1976 86 26 53 chr4 73967887 73968226 -110320436 - L1MA2 LINE L1 -4 6300 5971 948 74 0 0 chr4 73968226 73968361 -110320301 + L1MA2 LINE L1 5844 5978 -327 403 252 126 19 chr4 73968510 73968669 -110319993 - MLT1J2 LTR MaLR -5 445 270 394 324 145 6 chr4 73968811 73968990 -110319672 - MIR SINE MIR -13 249 46 181 342 36 36 chr4 73970868 73970979 -110317683 - L2 LINE L2 -266 3047 2937 238 256 37 12 chr4 73971732 73971814 -110316848 + (CATA)n Simple_repeat Simple_repeat 3 86 0 1705 217 30 0 chr4 73971843 73972272 -110316390 - L1ME1 LINE L1 -5 6161 5720 778 238 29 8 chr4 73972328 73972572 -110316090 - L1ME1 LINE L1 -902 5244 4996 230 353 112 0 chr4 73972704 73972820 -110315842 - MIR SINE MIR -114 148 20 684 296 48 6 chr4 73972984 73973221 -110315441 + MIR SINE MIR 1 256 -6 22 0 0 0 chr4 73973305 73973327 -110315335 + AT_rich Low_complexity Low_complexity 1 22 0 198 305 51 0 chr4 73973466 73973525 -110315137 - L3b LINE CR1 -134 1449 1388 266 326 12 12 chr4 73973658 73973744 -110314918 - MIR SINE MIR -100 108 23 287 291 99 26 chr4 73973785 73973936 -110314726 - L3b LINE CR1 -288 1295 1134 189 195 0 0 chr4 73974761 73974802 -110313860 + T-rich Low_complexity Low_complexity 1 41 0 644 300 25 38 chr4 73975653 73975890 -110312772 - MIR SINE MIR -18 244 11 1151 109 0 0 chr4 73975949 73976096 -110312566 + AluSg/x SINE Alu 148 294 -18 322 259 149 80 chr4 73976109 73976468 -110312194 + Charlie8 DNA MER1_type 1 366 -2051 2060 165 106 18 chr4 73977140 73977535 -110311127 - Tigger2a DNA MER2_type 0 434 5 20340 112 6 3 chr4 73977931 73981785 -110306877 + L1PA7 LINE L1 2310 6154 0 2167 158 42 5 chr4 73982248 73982652 -110306010 - MSTB1 LTR MaLR 0 432 14 312 290 124 2 chr4 73982893 73983062 -110305600 - L1ME LINE L1 -601 5563 5377 372 322 43 48 chr4 73983104 73983334 -110305328 - L1ME LINE L1 -812 5334 5106 24 0 0 0 chr4 73983628 73983652 -110305010 + AT_rich Low_complexity Low_complexity 1 24 0 643 299 59 14 chr4 73985518 73985739 -110302923 - MIR SINE MIR -14 248 18 1561 100 92 8 chr4 73985943 73986194 -110302468 + L1PA7 LINE L1 5879 6150 -4 2363 94 13 0 chr4 73986194 73986492 -110302170 + AluSp SINE Alu 1 302 -11 1214 179 5 0 chr4 73986809 73987028 -110301634 - AluJb SINE Alu 0 305 86 180 280 0 0 chr4 73987293 73987343 -110301319 - L2 LINE L2 -1 3312 3263 5480 77 1 1 chr4 73988936 73989685 -110298977 - L1PA6 LINE L1 -4 6150 5402 33940 100 6 9 chr4 73989688 73994848 -110293814 - L1PA6 LINE L1 -993 5153 11 1115 154 8 73 chr4 73995669 73995903 -110292759 + MER20 DNA MER1_type 1 219 0 354 326 28 28 chr4 73997258 73997399 -110291263 + MIR SINE MIR 37 177 -85 199 213 0 43 chr4 73997857 73997904 -110290758 + MIR SINE MIR 209 253 -9 193 255 0 0 chr4 73999167 73999218 -110289444 + L2 LINE L2 3263 3313 0 292 359 92 37 chr4 73999729 74000166 -110288496 + L2 LINE L2 2812 3272 0 346 268 248 0 chr4 74001798 74001951 -110286711 + MIR SINE MIR 23 213 -49 769 242 127 12 chr4 74002041 74002363 -110286299 - LTR16A LTR ERVL 0 450 92 2289 107 0 3 chr4 74002849 74003147 -110285515 + AluSx SINE Alu 1 297 -15 2189 131 38 14 chr4 74004620 74004986 -110283676 - THE1C LTR MaLR 0 375 1 242 226 0 38 chr4 74005752 74005805 -110282857 + L2 LINE L2 3211 3261 -11 793 192 7 7 chr4 74006035 74006181 -110282481 + FRAM SINE Alu 1 146 -30 279 0 0 0 chr4 74006186 74006217 -110282445 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 291 85 0 0 chr4 74006541 74006588 -110282074 + (TA)n Simple_repeat Simple_repeat 2 48 0 217 372 21 21 chr4 74007166 74007260 -110281402 + L2 LINE L2 2985 3078 -235 214 191 0 0 chr4 74008358 74008400 -110280262 + T-rich Low_complexity Low_complexity 1 42 0 1602 165 58 0 chr4 74008583 74008892 -110279770 + MER2 DNA MER2_type 1 327 -18 487 241 125 31 chr4 74009781 74010100 -110278562 - L1MC4 LINE L1 0 8042 7694 308 293 24 65 chr4 74010151 74010274 -110278388 - L1MC4 LINE L1 -372 7670 7553 697 205 93 0 chr4 74011063 74011214 -110277448 + FAM SINE Alu 1 165 -10 436 187 47 19 chr4 74011322 74011429 -110277233 - MLT1J2 LTR MaLR -281 169 60 363 364 72 45 chr4 74012017 74012391 -110276271 + L2 LINE L2 2877 3260 -12 1021 304 76 31 chr4 74012801 74013370 -110275292 - L2 LINE L2 0 3313 2711 3063 199 94 7 chr4 74014820 74015418 -110273244 - MER82 DNA MER2_type -1 652 3 270 0 0 0 chr4 74015468 74015498 -110273164 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 216 301 0 80 chr4 74015498 74015611 -110273051 - L2 LINE L2 -19 3294 3191 1547 271 95 25 chr4 74015702 74016356 -110272306 - L2 LINE L2 -1336 1978 1279 2175 217 39 42 chr4 74016394 74016574 -110272088 - L1ME1 LINE L1 -2 6164 5985 817 284 44 54 chr4 74016574 74017071 -110271591 - L1MA8 LINE L1 -295 5996 5505 767 297 134 3 chr4 74017078 74017465 -110271197 - L2 LINE L2 -2360 954 517 294 172 10 91 chr4 74017559 74017658 -110271004 - L1ME3A LINE L1 -112 6058 5968 645 152 0 0 chr4 74017744 74017843 -110270819 - Tigger7 DNA MER2_type 0 2487 2389 * 1488 228 0 4 chr4 74017841 74018109 -110270553 - Tigger7 DNA MER2_type -466 267 1 281 256 75 31 chr4 74018109 74018269 -110270393 - L1ME3A LINE L1 -243 5927 5761 317 278 9 52 chr4 74018355 74018470 -110270192 - L2 LINE L2 -2788 526 417 598 135 0 10 chr4 74018668 74018764 -110269898 + L1P LINE L1 4874 4968 -1178 * 7223 88 1 1 chr4 74018753 74019737 -110268925 - L1P LINE L1 -1257 4889 3906 473 222 64 94 chr4 74019740 74019911 -110268751 + L2 LINE L2 1314 1479 -1835 372 146 0 0 chr4 74019915 74019970 -110268692 + MER58 DNA MER1_type 2350 2404 -16 2844 156 119 67 chr4 74020073 74020385 -110268277 - L1MA9 LINE L1 -44 6268 5957 734 252 66 47 chr4 74020385 74020809 -110267853 - L1MC1 LINE L1 -407 5926 5495 575 299 45 5 chr4 74020812 74021013 -110267649 + L2 LINE L2 3103 3311 -2 492 295 87 80 chr4 74021013 74021325 -110267337 - L2 LINE L2 -379 2935 2622 525 299 138 32 chr4 74021338 74021716 -110266946 - L2 LINE L2 -895 2419 2002 216 287 103 82 chr4 74022575 74023331 -110265331 + L2 LINE L2 1789 2560 -754 423 250 188 34 chr4 74023618 74023794 -110264868 + MIR SINE MIR 37 239 -23 249 303 56 56 chr4 74023862 74024004 -110264658 + L2 LINE L2 2935 3076 -196 517 249 150 73 chr4 74024054 74024287 -110264375 + MIR SINE MIR 1 251 -11 181 390 0 0 chr4 74024345 74024422 -110264240 + L2 LINE L2 3195 3271 -1 509 241 71 14 chr4 74025080 74025221 -110263441 + Charlie1 DNA MER1_type 1 149 -2612 * 2085 172 107 24 chr4 74025214 74025313 -110263349 + Charlie1 DNA MER1_type 2209 2298 -463 1906 166 0 10 chr4 74025313 74025621 -110263041 + AluJb SINE Alu 1 305 -7 2085 172 107 24 chr4 74025621 74026026 -110262636 + Charlie1 DNA MER1_type 2298 2755 -6 2664 103 38 24 chr4 74026118 74026327 -110262335 - THE1C LTR MaLR 0 375 157 2415 74 0 3 chr4 74026327 74026626 -110262036 + AluY SINE Alu 3 300 -11 2664 103 38 24 chr4 74026626 74026786 -110261876 - THE1C LTR MaLR -218 157 1 334 308 122 0 chr4 74030311 74030418 -110258244 + L2 LINE L2 3153 3272 0 302 247 39 0 chr4 74032877 74032954 -110255708 - MER116 DNA Mariner 0 80 1 420 294 95 18 chr4 74033711 74034105 -110254557 + LTR33 LTR ERVL 50 514 -7 742 254 24 0 chr4 74034214 74034379 -110254283 + MER63B DNA MER1_type 2 170 -266 1239 100 0 6 chr4 74034393 74034563 -110254099 - AluSp SINE Alu -11 302 134 2520 67 3 6 chr4 74034583 74034895 -110253767 - AluY SINE Alu 0 311 1 959 202 55 51 chr4 74034902 74034963 -110253699 + MER63B DNA MER1_type 183 242 -820 6631 54 9 65 chr4 74034963 74036755 -110251907 + SVA Other Other 1 1420 0 959 202 55 51 chr4 74036755 74036943 -110251719 + MER63B DNA MER1_type 242 436 0 342 308 76 40 chr4 74037452 74037650 -110251012 + MIR SINE MIR 48 252 -10 294 162 0 8 chr4 74037892 74037978 -110250684 - MER5A DNA MER1_type 0 189 46 2478 125 17 15 chr4 74038052 74038224 -110250438 - L1MC1 LINE L1 -300 6033 5862 367 268 56 73 chr4 74038224 74038511 -110250151 - L1PA5 LINE L1 -296 5858 5577 334 252 96 0 chr4 74038511 74038626 -110250036 + MIR SINE MIR 110 235 -27 644 164 39 23 chr4 74038831 74038959 -110249703 + MIR SINE MIR 49 178 -84 361 0 0 0 chr4 74038967 74039008 -110249654 + MADE1 DNA Mariner 40 80 0 240 220 0 0 chr4 74039026 74039076 -110249586 + MIR SINE MIR 203 252 -10 22 35 0 0 chr4 74040029 74040058 -110248604 + AT_rich Low_complexity Low_complexity 1 29 0 506 310 59 0 chr4 74040799 74040986 -110247676 + MIR SINE MIR 8 205 -57 260 159 0 45 chr4 74041089 74041133 -110247529 - MIR SINE MIR -59 149 108 263 235 29 0 chr4 74041195 74041263 -110247399 + Tigger5 DNA MER2_type 2251 2320 -3 339 325 9 9 chr4 74041825 74041939 -110246723 + L2 LINE L2 3197 3310 -3 26 0 0 0 chr4 74042287 74042313 -110246349 + AT_rich Low_complexity Low_complexity 1 26 0 2240 118 3 0 chr4 74042579 74042885 -110245777 + AluSx SINE Alu 1 307 -5 589 306 90 36 chr4 74043031 74043212 -110245450 + L1MC4a LINE L1 5197 4881 -1265 1630 185 0 45 chr4 74043212 74043520 -110245142 + AluJb SINE Alu 1 294 -18 589 306 90 36 chr4 74043520 74044066 -110244596 + L1MC4a LINE L1 4880 5395 -751 2613 226 55 36 chr4 74044562 74045176 -110243486 - MLT1E2 LTR MaLR 0 626 1 204 40 0 0 chr4 74045339 74045364 -110243298 + (T)n Simple_repeat Simple_repeat 1 25 0 2904 167 19 36 chr4 74045447 74046028 -110242634 + L1MB2 LINE L1 5565 6135 -36 1808 168 13 10 chr4 74046728 74047037 -110241625 - AluJb SINE Alu 0 312 3 729 210 49 19 chr4 74047388 74047550 -110241112 + MIR SINE MIR 90 256 -6 21 0 0 0 chr4 74047768 74047789 -110240873 + AT_rich Low_complexity Low_complexity 1 21 0 1874 244 99 57 chr4 74047848 74048517 -110240145 - MER21B LTR ERV1 -150 713 17 26 30 0 0 chr4 74048594 74048627 -110240035 + AT_rich Low_complexity Low_complexity 1 33 0 694 279 180 11 chr4 74050233 74050595 -110238067 - L2 LINE L2 0 3313 2891 1695 169 69 61 chr4 74051015 74051377 -110237285 + MLT1A1 LTR MaLR 1 365 0 742 323 130 35 chr4 74052127 74052648 -110236014 - L2 LINE L2 -8 3305 2664 2085 124 41 0 chr4 74052648 74052938 -110235724 - AluSx SINE Alu -10 302 1 742 323 130 35 chr4 74052938 74053257 -110235405 - L2 LINE L2 -649 2664 2377 * 932 222 5 5 chr4 74053249 74053452 -110235210 + MIR SINE MIR 8 210 -52 247 342 101 0 chr4 74053526 74053684 -110234978 - L2 LINE L2 -997 2317 2144 2319 144 50 30 chr4 74054020 74054097 -110234565 + L1PB4 LINE L1 5709 5783 -373 213 65 0 0 chr4 74054097 74054128 -110234534 + (CTATA)n Simple_repeat Simple_repeat 3 33 0 2319 144 50 30 chr4 74054128 74054488 -110234174 + L1PB4 LINE L1 5783 6155 -1 949 201 26 11 chr4 74054858 74055047 -110233615 - MLT1C LTR MaLR 0 467 276 3003 137 42 29 chr4 74055062 74055586 -110233076 - MER34B LTR ERV1 -29 536 6 1179 211 49 0 chr4 74055595 74055841 -110232821 - MLT1C LTR MaLR -209 258 1 700 208 84 0 chr4 74056575 74056729 -110231933 + MIR SINE MIR 70 236 -26 1010 219 5 0 chr4 74057229 74057416 -110231246 - MER5A DNA MER1_type 0 189 2 335 270 122 14 chr4 74057481 74057629 -110231033 + MIR SINE MIR 49 212 -50 296 299 45 37 chr4 74058107 74058241 -110230421 - MER5A DNA MER1_type -23 166 32 197 335 116 43 chr4 74058264 74058428 -110230234 + MIR SINE MIR 32 207 -55 1436 152 0 0 chr4 74058538 74058769 -110229893 - MER41E LTR ERV1 -281 231 1 1671 181 7 10 chr4 74058921 74059231 -110229431 + AluJb SINE Alu 1 309 -3 1018 272 75 56 chr4 74059361 74060041 -110228621 - L1ME3 LINE L1 -214 5948 5256 1646 80 29 38 chr4 74060111 74060350 -110228312 + THE1B LTR MaLR 1 237 -127 222 37 0 0 chr4 74060732 74060759 -110227903 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1565 200 4 0 chr4 74060762 74061042 -110227620 - AluJb SINE Alu -29 283 3 338 349 11 0 chr4 74062215 74062390 -110226272 - L1ME3 LINE L1 -1088 5058 4882 242 241 0 0 chr4 74062537 74062595 -110226067 - L1ME3 LINE L1 -1471 4675 4618 1474 212 31 7 chr4 74062703 74062996 -110225666 - AluJo SINE Alu -12 300 1 373 350 165 15 chr4 74063370 74063836 -110224826 - L2 LINE L2 -456 2858 2323 264 208 8 142 chr4 74064240 74064360 -110224302 + LTR65 LTR ERV1 336 439 -230 386 125 0 14 chr4 74064390 74064396 -110224266 + (GA)n Simple_repeat Simple_repeat 1 6 -65 1988 109 0 11 chr4 74064396 74064672 -110223990 + AluSx SINE Alu 1 273 -39 386 125 0 14 chr4 74064672 74064737 -110223925 + (GA)n Simple_repeat Simple_repeat 6 71 0 * 648 167 0 0 chr4 74064684 74064804 -110223858 + GA-rich Low_complexity Low_complexity 1 120 0 218 303 30 0 chr4 74064854 74064920 -110223742 + MIR SINE MIR 32 99 -163 351 0 0 0 chr4 74065252 74065291 -110223371 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 464 254 7 49 chr4 74065611 74065753 -110222909 + MIR3 SINE MIR 11 146 -62 756 203 17 17 chr4 74065765 74065942 -110222720 + MER20 DNA MER1_type 1 177 -42 21 0 0 0 chr4 74065991 74066012 -110222650 + AT_rich Low_complexity Low_complexity 1 21 0 1773 114 40 26 chr4 74066081 74066354 -110222308 + AluSx SINE Alu 36 312 0 786 333 85 18 chr4 74066379 74067005 -110221657 - L2 LINE L2 -1 3312 2641 276 407 51 17 chr4 74067042 74067219 -110221443 + L2 LINE L2 3009 3191 -81 1407 100 48 0 chr4 74067523 74067752 -110220910 + L1MA5A LINE L1 6054 6293 -4 1315 324 30 33 chr4 74068691 74069104 -110219558 + L2 LINE L2 2437 2850 -464 1374 179 30 109 chr4 74069104 74069176 -110219486 - MLT2C1 LTR ERVL 0 397 321 1877 169 7 10 chr4 74069176 74069478 -110219184 + AluJb SINE Alu 1 301 -11 1374 179 30 109 chr4 74069478 74069494 -110219168 - MLT2C1 LTR ERVL -76 321 305 1510 158 45 30 chr4 74069494 74069760 -110218902 + AluJo SINE Alu 42 311 -1 1374 179 30 109 chr4 74069760 74070101 -110218561 - MLT2C1 LTR ERVL -92 305 1 1315 324 30 33 chr4 74070101 74070230 -110218432 + L2 LINE L2 2850 2977 -337 303 289 27 102 chr4 74070260 74070303 -110218359 + L2 LINE L2 3118 3163 -150 1716 168 24 14 chr4 74070303 74070595 -110218067 - AluJo SINE Alu -17 295 1 303 289 27 102 chr4 74070595 74070738 -110217924 + L2 LINE L2 3163 3290 -23 977 310 39 15 chr4 74070850 74071256 -110217406 - LTR16B LTR ERVL -12 452 37 1376 270 61 0 chr4 74071365 74071773 -110216889 - MLT1J LTR MaLR -78 433 1 991 276 88 57 chr4 74072942 74073611 -110215051 - MER21B LTR ERV1 -150 713 24 465 267 221 9 chr4 74073846 74073931 -110214731 - LTR50 LTR ERVL 0 795 729 2117 110 0 14 chr4 74073931 74074222 -110214440 + AluSg SINE Alu 1 287 -23 1816 194 0 3 chr4 74074229 74074528 -110214134 + AluJb SINE Alu 1 298 -14 465 267 221 9 chr4 74074528 74074760 -110213902 - LTR50 LTR ERVL -70 725 401 460 225 90 9 chr4 74075189 74075300 -110213362 + L2 LINE L2 3191 3310 -3 186 292 14 56 chr4 74076015 74076087 -110212575 + MIR3 SINE MIR 9 77 -131 849 265 48 14 chr4 74076901 74077195 -110211467 - MLT1J LTR MaLR -8 503 200 464 286 68 34 chr4 74078796 74079002 -110209660 + MIR SINE MIR 2 214 -48 380 20 20 0 chr4 74079319 74079368 -110209294 + (CA)n Simple_repeat Simple_repeat 2 51 0 2310 100 3 0 chr4 74079417 74079717 -110208945 - AluSx SINE Alu -11 301 1 909 194 0 63 chr4 74079724 74079738 -110208924 - AluJo SINE Alu 0 312 299 502 115 0 13 chr4 74079738 74079816 -110208846 - L1MC2 LINE L1 -13 6331 6255 909 194 0 63 chr4 74079816 74079841 -110208821 - AluJo SINE Alu -13 299 274 243 0 0 0 chr4 74079841 74079868 -110208794 + (TTA)n Simple_repeat Simple_repeat 2 28 0 909 194 0 63 chr4 74079868 74080033 -110208629 - AluJo SINE Alu -38 274 120 4876 140 54 10 chr4 74080065 74081044 -110207618 - L1MC2 LINE L1 -129 6215 5196 1593 198 0 20 chr4 74081067 74081360 -110207302 + AluJo SINE Alu 1 287 -25 341 312 128 8 chr4 74081373 74081498 -110207164 - MIR3 SINE MIR -66 142 3 662 207 0 0 chr4 74083876 74083987 -110204675 + FLAM_A SINE Alu 6 116 -26 252 0 0 0 chr4 74084001 74084029 -110204633 + (CA)n Simple_repeat Simple_repeat 1 28 0 580 144 0 0 chr4 74084101 74084191 -110204471 - AluS SINE Alu 0 310 221 2245 116 0 0 chr4 74084358 74084661 -110204001 - AluSx SINE Alu -9 303 1 1303 181 4 11 chr4 74084942 74085207 -110203455 - L1MB7 LINE L1 -16 6168 5906 468 227 0 0 chr4 74085284 74085381 -110203281 - MER92A LTR ERV1 0 412 316 699 149 0 0 chr4 74085385 74085492 -110203170 + AluJo SINE Alu 1 107 -205 882 195 6 11 chr4 74085578 74085752 -110202910 + AluJo SINE Alu 115 287 -25 819 244 9 9 chr4 74085833 74086046 -110202616 - MER92A LTR ERV1 -199 213 1 31 68 0 0 chr4 74087463 74087522 -110201140 + AT_rich Low_complexity Low_complexity 1 59 0 2392 79 3 3 chr4 74087783 74088086 -110200576 + AluSg1 SINE Alu 1 303 -6 194 316 235 0 chr4 74088399 74088497 -110200165 + L2 LINE L2 3127 3247 -25 611 321 35 155 chr4 74088657 74089205 -110199457 + L2 LINE L2 2828 3309 -4 317 342 60 72 chr4 74089256 74089642 -110199020 + L2 LINE L2 2424 2804 -510 446 373 84 39 chr4 74089691 74090050 -110198612 + L2 LINE L2 2898 3272 0 721 274 160 3 chr4 74090726 74091058 -110197604 - L1MC4a LINE L1 -1959 5849 5466 907 168 7 0 chr4 74091064 74091207 -110197455 - FAM SINE Alu -21 164 21 659 222 31 18 chr4 74091208 74091433 -110197229 - L1MC4a LINE L1 -2327 5481 5254 216 0 0 0 chr4 74092523 74092547 -110196115 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 191 271 0 0 chr4 74093660 74093708 -110194954 - L2 LINE L2 -10 3262 3215 265 246 85 93 chr4 74093901 74094019 -110194643 - L2 LINE L2 0 3313 3197 353 240 96 32 chr4 74094222 74094347 -110194315 - L2 LINE L2 -454 2860 2728 283 298 98 73 chr4 74094403 74094565 -110194097 - L2 LINE L2 -746 2568 2395 198 0 0 0 chr4 74094565 74094587 -110194075 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 283 298 98 73 chr4 74094587 74094699 -110193963 - L2 LINE L2 -919 2395 2287 639 292 74 9 chr4 74095368 74095584 -110193078 + MIR SINE MIR 23 252 -10 1281 171 32 19 chr4 74146527 74146837 -110141825 - MER33 DNA MER1_type -3 321 8 1536 186 52 14 chr4 74146865 74147041 -110141621 - Charlie1 DNA MER1_type 0 2761 2593 2622 42 3 7 chr4 74147041 74147348 -110141314 - AluY SINE Alu -5 306 1 1536 186 52 14 chr4 74147348 74147591 -110141071 - Charlie1 DNA MER1_type -168 2593 2326 1546 154 37 4 chr4 74147691 74147964 -110140698 + Tigger3(Golem) DNA MER2_type 2747 3028 -1 1640 223 110 67 chr4 74148665 74149203 -110139459 + MLT1F1 LTR MaLR 7 567 0 1957 158 9 0 chr4 74150660 74151002 -110137660 - MER39B LTR ERV1 -308 345 1 347 249 52 52 chr4 74151007 74151180 -110137482 - L1MC5 LINE L1 -318 7643 7471 1960 165 0 0 chr4 74151216 74151501 -110137161 + AluJb SINE Alu 2 286 -26 558 210 29 93 chr4 74151732 74151937 -110136725 + MER58A DNA MER1_type 5 196 -28 1266 128 43 4 chr4 74151937 74152364 -110136298 - LTR54 LTR ERV1 0 510 7 215 264 0 19 chr4 74152766 74152819 -110135843 + MER5A DNA MER1_type 40 91 -98 215 243 117 81 chr4 74152943 74153054 -110135608 + L2 LINE L2 3157 3271 -1 2834 223 78 39 chr4 74153205 74153892 -110134770 + L1ME3 LINE L1 5173 5908 -254 2253 97 0 26 chr4 74153892 74154232 -110134430 + AluSx SINE Alu 1 312 0 2834 223 78 39 chr4 74154232 74154498 -110134164 + L1ME3 LINE L1 5908 6162 0 686 139 122 0 chr4 74154511 74154626 -110134036 + FLAM_C SINE Alu 1 129 -4 471 231 46 15 chr4 74154758 74154888 -110133774 + MIR SINE MIR 129 262 0 1935 155 0 22 chr4 74155040 74155356 -110133306 - AluJo SINE Alu -1 311 3 310 219 0 0 chr4 74155388 74155452 -110133210 + L1MC4 LINE L1 6640 6703 -1339 366 123 0 0 chr4 74155457 74155514 -110133148 + (TG)n Simple_repeat Simple_repeat 2 58 0 1401 195 41 27 chr4 74156174 74156466 -110132196 + AluJo SINE Alu 2 297 -15 281 266 28 21 chr4 74156607 74156750 -110131912 + L1M4 LINE L1 4467 4610 -1536 243 342 54 18 chr4 74156758 74156869 -110131793 + MER5A DNA MER1_type 43 157 -32 319 282 208 13 chr4 74157010 74157159 -110131503 + MER5A DNA MER1_type 12 189 0 7546 22 0 0 chr4 74157744 74158855 -110129807 - L1PA3 LINE L1 -4 6151 5038 1644 180 46 0 chr4 74159432 74159715 -110128947 + AluJb SINE Alu 6 301 -11 4820 211 107 93 chr4 74160159 74160692 -110127970 - MER41-int LTR ERV1 -2209 4054 3530 1904 160 0 0 chr4 74160692 74160967 -110127695 + AluSx SINE Alu 1 275 -37 4820 211 107 93 chr4 74160967 74161042 -110127620 - MER41-int LTR ERV1 -2733 3530 3457 345 24 0 0 chr4 74161042 74161084 -110127578 + (TGG)n Simple_repeat Simple_repeat 1 42 0 387 0 0 0 chr4 74161085 74161128 -110127534 + (TG)n Simple_repeat Simple_repeat 1 43 0 1648 186 4 4 chr4 74161130 74161404 -110127258 - AluJb SINE Alu -36 276 3 4820 211 107 93 chr4 74161404 74161626 -110127036 - MER41-int LTR ERV1 -2806 3457 3239 2235 110 10 0 chr4 74161626 74161925 -110126737 - AluSg SINE Alu -8 302 1 4820 211 107 93 chr4 74161925 74162803 -110125859 - MER41-int LTR ERV1 -3024 3239 2374 2074 117 24 7 chr4 74162803 74163101 -110125561 + AluSc SINE Alu 1 303 -6 4820 211 107 93 chr4 74163101 74164300 -110124362 - MER41-int LTR ERV1 -3889 2374 941 1983 160 3 0 chr4 74164300 74164594 -110124068 + AluSx SINE Alu 1 295 -17 4820 211 107 93 chr4 74164594 74164623 -110124039 - MER41-int LTR ERV1 -5322 941 914 586 295 114 13 chr4 74165157 74165394 -110123268 + MIR SINE MIR 2 262 0 896 217 25 178 chr4 74165702 74165754 -110122908 + L2 LINE L2 1414 1472 -1842 487 230 26 18 chr4 74165754 74165867 -110122795 - MER81 DNA DNA 0 114 1 896 217 25 178 chr4 74165867 74165898 -110122764 + L2 LINE L2 1472 1506 -1808 238 65 0 0 chr4 74165898 74165929 -110122733 + (TTTG)n Simple_repeat Simple_repeat 1 172 0 1977 93 48 0 chr4 74165929 74166198 -110122464 - AluSq SINE Alu -1 312 1 896 217 25 178 chr4 74166198 74166405 -110122257 + L2 LINE L2 1505 1742 -1572 227 167 48 0 chr4 74166405 74166447 -110122215 + AluSx SINE Alu 1 44 -258 896 217 25 178 chr4 74166447 74166461 -110122201 + L2 LINE L2 1742 1756 -1558 1461 169 58 0 chr4 74166461 74166722 -110121940 + AluSx SINE Alu 21 296 -16 896 217 25 178 chr4 74166722 74167004 -110121658 + L2 LINE L2 1756 1906 -1408 239 205 24 48 chr4 74167031 74167114 -110121548 + MLT1J1 LTR MaLR 364 444 -2 1323 262 180 39 chr4 74167117 74167778 -110120884 + L2 LINE L2 2224 2977 -337 279 250 31 21 chr4 74168304 74168391 -110120271 + MLT1E LTR MaLR 24 114 -479 1070 152 22 87 chr4 74168391 74168622 -110120040 + MER20 DNA MER1_type 1 216 -3 240 154 0 0 chr4 74168715 74168754 -110119908 - MLT1G LTR MaLR -346 244 206 570 213 34 4 chr4 74168965 74169105 -110119557 + MLT1G1 LTR MaLR 399 595 0 474 290 33 49 chr4 74169137 74169320 -110119342 - MIR SINE MIR -78 184 5 587 236 8 8 chr4 74169334 74169461 -110119201 - L2 LINE L2 0 3313 3187 971 208 70 84 chr4 74169461 74169832 -110118830 - LTR8 LTR ERV1 0 691 362 631 204 0 0 chr4 74169834 74169947 -110118715 - AluJb SINE Alu -5 307 195 2003 131 8 47 chr4 74169949 74170330 -110118332 - LTR8A LTR ERV1 -361 366 1 1151 283 13 0 chr4 74170332 74170639 -110118023 - HUERS-P1 LTR ERV1 -3 6260 5950 4770 206 83 44 chr4 74170718 74170901 -110117761 - LTR49-int LTR ERV1 -105 6226 6052 1592 177 3 43 chr4 74170901 74171200 -110117462 - AluJo SINE Alu -24 288 2 4770 206 83 44 chr4 74171200 74172623 -110116039 - LTR49-int LTR ERV1 -279 6052 4597 8119 31 0 1 chr4 74172723 74174060 -110114602 - L1P2 LINE L1 -447 5708 4374 3630 222 124 71 chr4 74174208 74175541 -110113121 + L1MD1 LINE L1 13 1415 -5125 * 3801 183 72 11 chr4 74175532 74176455 -110112207 + L1MD1 LINE L1 5607 6583 -53 800 142 0 0 chr4 74176463 74176583 -110112079 - AluJo SINE Alu 0 312 193 769 208 7 7 chr4 74176583 74176727 -110111935 - AluJo SINE Alu -167 145 2 432 45 15 0 chr4 74176727 74176793 -110111869 + L1MD2 LINE L1 6289 6355 -4 677 229 118 16 chr4 74177177 74177422 -110111240 - L2 LINE L2 0 3313 3044 462 273 27 27 chr4 74179853 74180003 -110108659 + MIR SINE MIR 55 204 -58 28 61 0 0 chr4 74180148 74180197 -110108465 + AT_rich Low_complexity Low_complexity 1 49 0 2322 101 0 0 chr4 74180729 74181037 -110107625 - AluSc SINE Alu -1 308 1 616 258 94 9 chr4 74181360 74181573 -110107089 + MIR SINE MIR 32 262 0 311 316 32 52 chr4 74182694 74182849 -110105813 + MIR3 SINE MIR 54 205 -3 227 304 76 22 chr4 74182928 74183020 -110105642 - MIR SINE MIR -73 189 93 401 300 84 48 chr4 74183362 74183589 -110105073 - MIR SINE MIR -8 254 20 1446 233 176 11 chr4 74184721 74185197 -110103465 - MLT1H1 LTR MaLR 0 555 1 23 33 0 0 chr4 74186533 74186563 -110102099 + AT_rich Low_complexity Low_complexity 1 30 0 413 242 65 87 chr4 74187305 74187536 -110101126 - MER112 DNA MER1_type -34 226 1 951 182 12 18 chr4 74188212 74188382 -110100280 + FRAM SINE Alu 1 168 -8 391 233 7 82 chr4 74189628 74189774 -110098888 + L1MC5 LINE L1 7764 7898 -63 476 202 131 0 chr4 74189879 74189978 -110098684 + FLAM_A SINE Alu 2 113 -29 2063 134 3 0 chr4 74189989 74190302 -110098360 + AluSx SINE Alu 1 314 0 21 0 0 0 chr4 74190377 74190398 -110098264 + AT_rich Low_complexity Low_complexity 1 21 0 584 292 94 0 chr4 74190744 74190936 -110097726 - MIR SINE MIR -50 212 3 684 65 0 0 chr4 74191274 74191366 -110097296 - LTR7 LTR ERV1 -358 92 1 2433 74 45 13 chr4 74191366 74191744 -110096918 - HERVH LTR ERV1 0 7713 7324 1319 130 19 0 chr4 74191744 74191960 -110096702 - HERVH LTR ERV1 -1894 5819 5600 4000 153 1 3 chr4 74191961 74192623 -110096039 - HERVH LTR ERV1 -2564 5149 4489 2984 128 2 10 chr4 74192626 74193132 -110095530 - HERVH LTR ERV1 -3720 3993 3492 * 19177 91 57 37 chr4 74193122 74196347 -110092315 - HERVH LTR ERV1 -4423 3290 1 3426 62 2 9 chr4 74196349 74196800 -110091862 - LTR7 LTR ERV1 -2 448 1 281 183 0 61 chr4 74197067 74197127 -110091535 + L1MC4 LINE L1 7939 7994 -48 3651 143 67 26 chr4 74197127 74197825 -110090837 - LTR8A LTR ERV1 0 727 1 281 183 0 61 chr4 74197825 74197846 -110090816 + L1MC4 LINE L1 7994 8015 -27 589 275 35 7 chr4 74198665 74198807 -110089855 + MIR SINE MIR 9 154 -108 3323 35 0 0 chr4 74199064 74199462 -110089200 + L1PA4 LINE L1 5758 6155 0 571 215 25 13 chr4 74199462 74199620 -110089042 - MER3 DNA MER1_type -49 160 1 857 191 0 25 chr4 74199692 74199875 -110088787 + FRAM SINE Alu 2 180 0 445 268 108 24 chr4 74200666 74200879 -110087783 - L2 LINE L2 0 3313 3083 24 0 0 0 chr4 74202284 74202308 -110086354 + AT_rich Low_complexity Low_complexity 1 24 0 243 0 0 0 chr4 74202610 74202637 -110086025 + (TG)n Simple_repeat Simple_repeat 2 28 0 1911 157 3 10 chr4 74203123 74203423 -110085239 + AluJo SINE Alu 1 298 -14 538 170 0 20 chr4 74203802 74203902 -110084760 - Tigger7 DNA MER2_type -1 2486 2389 * 1318 199 43 0 chr4 74203900 74204156 -110084506 - Tigger7 DNA MER2_type -2220 267 1 28 0 0 0 chr4 74205752 74205780 -110082882 + AT_rich Low_complexity Low_complexity 1 28 0 312 321 47 89 chr4 74205974 74206038 -110082624 - L2 LINE L2 -2 3270 3205 2183 100 4 0 chr4 74206038 74206349 -110082313 - AluSx SINE Alu 0 312 1 312 321 47 89 chr4 74206349 74206472 -110082190 - L2 LINE L2 -67 3205 3089 347 261 81 0 chr4 74206706 74206817 -110081845 + MIR SINE MIR 133 252 -10 30 0 0 0 chr4 74207901 74207931 -110080731 + AT_rich Low_complexity Low_complexity 1 30 0 732 318 46 4 chr4 74208101 74208340 -110080322 + MIR SINE MIR 14 262 0 2386 105 3 0 chr4 74208433 74208739 -110079923 + AluSc SINE Alu 1 307 -2 721 203 0 0 chr4 74209317 74209440 -110079222 - FLAM_C SINE Alu -20 123 1 436 248 57 38 chr4 74210147 74210304 -110078358 + MER21B LTR ERV1 331 490 -373 195 114 0 0 chr4 74210505 74210540 -110078122 + (A)n Simple_repeat Simple_repeat 1 35 0 1553 142 20 12 chr4 74210711 74210958 -110077704 - AluJb SINE Alu -63 249 1 213 119 0 0 chr4 74211129 74211171 -110077491 + (CA)n Simple_repeat Simple_repeat 1 42 0 2245 149 135 0 chr4 74211810 74212247 -110076415 + Tigger7 DNA MER2_type 2 497 -236 970 157 38 5 chr4 74212242 74212427 -110076235 + Tigger7 DNA MER2_type 2291 2481 -6 * 1097 155 17 11 chr4 74212441 74212622 -110076040 - AluJb SINE Alu -15 297 116 1294 195 101 21 chr4 74212932 74213317 -110075345 - Charlie1a DNA MER1_type -715 740 325 3285 153 39 73 chr4 74213317 74214133 -110074529 + L1MB4 LINE L1 5366 6153 -27 186 43 0 0 chr4 74214145 74214168 -110074494 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 685 152 7 51 chr4 74214232 74214370 -110074292 - Charlie1a DNA MER1_type -1319 136 5 228 86 0 0 chr4 74214701 74214736 -110073926 + (TTA)n Simple_repeat Simple_repeat 2 36 0 384 230 0 0 chr4 74214738 74214812 -110073850 - FRAM SINE Alu -20 146 73 261 268 0 0 chr4 74214987 74215058 -110073604 - L1M4 LINE L1 -1576 4570 4500 226 296 139 9 chr4 74216300 74216415 -110072247 + MIR3 SINE MIR 39 168 -40 180 0 0 0 chr4 74216677 74216697 -110071965 + (A)n Simple_repeat Simple_repeat 1 20 0 756 178 0 0 chr4 74218539 74218657 -110070005 + FLAM_C SINE Alu 1 118 -15 773 179 36 0 chr4 74219000 74219140 -110069522 + FRAM SINE Alu 5 149 -27 423 0 0 0 chr4 74219140 74219187 -110069475 + (CA)n Simple_repeat Simple_repeat 2 48 0 1678 169 45 13 chr4 74219188 74219501 -110069161 - MLT1A1 LTR MaLR -42 323 1 2028 117 0 7 chr4 74220181 74220464 -110068198 + AluSx SINE Alu 1 281 -31 216 0 0 0 chr4 74220468 74220492 -110068170 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 246 301 203 8 chr4 74220681 74220804 -110067858 - MIR3 SINE MIR -5 203 57 1972 133 0 0 chr4 74221753 74222066 -110066596 - AluSx SINE Alu 0 317 5 392 213 90 16 chr4 74223615 74223737 -110064925 + L2 LINE L2 1962 2092 -1222 411 274 178 0 chr4 74223753 74223910 -110064752 + MER5A DNA MER1_type 5 189 0 323 264 83 37 chr4 74223936 74224152 -110064510 + L2 LINE L2 2156 2381 -933 510 327 47 28 chr4 74224288 74224502 -110064160 + L2 LINE L2 2638 2855 -459 385 280 138 55 chr4 74224640 74224915 -110063747 + L2 LINE L2 2996 3293 -20 2701 191 102 3 chr4 74225921 74226488 -110062174 - MER82 DNA MER2_type -7 646 24 25 65 0 0 chr4 74228690 74228736 -110059926 + AT_rich Low_complexity Low_complexity 1 46 0 251 286 0 106 chr4 74228743 74228904 -110059758 - MIR SINE MIR -106 156 13 3249 105 56 33 chr4 74230139 74230653 -110058009 + MER1A DNA MER1_type 2 527 0 242 273 184 56 chr4 74231696 74231963 -110056699 + L2 LINE L2 2438 2738 -576 461 303 50 77 chr4 74232104 74232365 -110056297 + L2 LINE L2 3019 3272 0 254 317 112 69 chr4 74233070 74233373 -110055289 - L2 LINE L2 -850 2464 2149 645 231 0 51 chr4 74234483 74234639 -110054023 - AluJo SINE Alu -93 219 72 642 190 8 8 chr4 74234667 74234788 -110053874 - FLAM_C SINE Alu -22 121 1 199 253 241 0 chr4 74234947 74235026 -110053636 + L3 LINE CR1 1470 1567 -10 225 309 55 0 chr4 74235676 74235731 -110052931 - MIR SINE MIR -132 76 19 971 34 0 0 chr4 74235850 74235969 -110052693 + L1PA5 LINE L1 6036 6154 0 612 317 27 0 chr4 74236393 74236579 -110052083 + MIR SINE MIR 15 205 -57 525 192 168 0 chr4 74237694 74237819 -110050843 + Charlie4 DNA MER1_type 1812 1957 -4 216 280 220 10 chr4 74242760 74242860 -110045802 + L2 LINE L2 3151 3271 -1 21 36 0 0 chr4 74243471 74243499 -110045163 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr4 74244561 74244581 -110044081 + (TA)n Simple_repeat Simple_repeat 2 21 0 285 137 42 126 chr4 74244643 74244738 -110043924 - MIR SINE MIR -1 261 175 462 162 111 0 chr4 74246533 74246650 -110042012 - L1MA8 LINE L1 -2 6289 6160 990 336 128 33 chr4 74249437 74249965 -110038697 - L2 LINE L2 -45 3227 2751 1955 93 86 0 chr4 74249965 74250245 -110038417 + AluSg SINE Alu 1 304 -6 990 336 128 33 chr4 74250245 74250400 -110038262 - L2 LINE L2 -521 2751 2612 797 109 31 0 chr4 74250400 74250528 -110038134 + L1MA3 LINE L1 6163 6294 -11 990 336 128 33 chr4 74250528 74251086 -110037576 - L2 LINE L2 -660 2612 1856 284 224 265 20 chr4 74252404 74252502 -110036160 + MIR SINE MIR 121 242 -20 22 0 0 0 chr4 74253469 74253491 -110035171 + AT_rich Low_complexity Low_complexity 1 22 0 661 251 65 45 chr4 74254637 74254884 -110033778 - MARNA DNA Mariner -217 369 118 193 281 105 0 chr4 74255264 74255321 -110033341 - MIR3 SINE MIR -29 179 117 23 0 0 0 chr4 74255590 74255613 -110033049 + AT_rich Low_complexity Low_complexity 1 23 0 334 194 0 0 chr4 74255709 74255771 -110032891 + MIR SINE MIR 117 178 -84 21 36 0 0 chr4 74256987 74257015 -110031647 + AT_rich Low_complexity Low_complexity 1 28 0 294 267 22 33 chr4 74257062 74257152 -110031510 + MIR SINE MIR 55 143 -119 285 260 78 94 chr4 74257859 74257939 -110030723 - MIR SINE MIR -67 195 115 1653 154 6 64 chr4 74257939 74258251 -110030411 + AluJo SINE Alu 1 294 -18 285 260 78 94 chr4 74258251 74258362 -110030300 - MIR SINE MIR -147 115 7 380 307 188 46 chr4 74258835 74258893 -110029769 + L2 LINE L2 1593 1641 -1673 1949 146 103 65 chr4 74258893 74259311 -110029351 - Tigger2a DNA MER2_type 0 434 1 380 307 188 46 chr4 74259311 74260033 -110028629 + L2 LINE L2 1641 2484 -830 1204 100 0 12 chr4 74260140 74260300 -110028362 - 7SLRNA srpRNA srpRNA -17 303 146 335 259 138 56 chr4 74260411 74260643 -110028019 + HAL1 LINE L1 2250 2500 -7 2093 84 0 26 chr4 74261519 74261830 -110026832 - AluY SINE Alu -8 303 1 185 125 75 0 chr4 74263602 74263642 -110025020 + (AAATG)n Simple_repeat Simple_repeat 3 45 0 2474 174 53 5 chr4 74264771 74265207 -110023455 + LTR32 LTR ERVL 15 471 0 536 328 29 17 chr4 74265288 74265526 -110023136 - MIR SINE MIR -1 261 21 225 0 0 0 chr4 74266549 74266574 -110022088 + (TA)n Simple_repeat Simple_repeat 1 25 0 394 151 27 41 chr4 74266733 74266747 -110021915 + AluJ/FRAM SINE Alu 232 245 -57 1636 150 0 30 chr4 74266747 74267013 -110021649 + AluJb SINE Alu 12 269 -43 394 151 27 41 chr4 74267013 74267071 -110021591 + AluJ/FRAM SINE Alu 245 288 -14 21 0 0 0 chr4 74267071 74267092 -110021570 + AT_rich Low_complexity Low_complexity 1 21 0 200 211 0 58 chr4 74268137 74268189 -110020473 + (TAGG)n Simple_repeat Simple_repeat 2 50 0 324 300 0 33 chr4 74268856 74268946 -110019716 + L2 LINE L2 3183 3269 -3 24 53 0 0 chr4 74269124 74269162 -110019500 + AT_rich Low_complexity Low_complexity 1 38 0 228 277 191 0 chr4 74269316 74269410 -110019252 + MIR SINE MIR 32 143 -65 1716 257 70 29 chr4 74269541 74270527 -110018135 - L1M4 LINE L1 -2839 3307 2282 7678 26 0 0 chr4 74270531 74271570 -110017092 - L1PA4 LINE L1 -1 6154 5115 305 40 60 0 chr4 74271570 74271620 -110017042 - L1PA4 LINE L1 -1763 4383 4331 1905 150 7 0 chr4 74271621 74271907 -110016755 - AluSx SINE Alu -24 288 1 348 251 56 23 chr4 74272031 74272181 -110016481 - L1MEc LINE L1 -2814 3401 3246 251 270 90 9 chr4 74272577 74272688 -110015974 - L1MEc LINE L1 -4734 1662 1543 619 232 99 55 chr4 74272952 74273387 -110015275 + L1MC5 LINE L1 7474 7927 -34 312 267 20 0 chr4 74273390 74273491 -110015171 + L1MB1 LINE L1 3519 3621 -2525 2361 69 20 3 chr4 74274170 74274476 -110014186 + AluY SINE Alu 1 311 0 263 196 20 0 chr4 74275193 74275244 -110013418 - HAL1b LINE L1 -915 433 382 26 30 0 0 chr4 74275287 74275320 -110013342 + AT_rich Low_complexity Low_complexity 1 33 0 1601 240 29 19 chr4 74275345 74275761 -110012901 + LTR52 LTR ERVL 1 420 -1 447 173 70 32 chr4 74275846 74276002 -110012660 + L1MB1 LINE L1 3840 4001 -2145 701 271 60 60 chr4 74276055 74276391 -110012271 - LTR33 LTR ERVL -175 346 11 624 283 61 47 chr4 74276400 74276765 -110011897 + L1MB1 LINE L1 4008 4381 -1765 1339 188 37 40 chr4 74276765 74277063 -110011599 + AluSx SINE Alu 1 297 -15 624 283 61 47 chr4 74277063 74277104 -110011558 + L1MB1 LINE L1 4381 4420 -1726 22 35 0 0 chr4 74277115 74277144 -110011518 + AT_rich Low_complexity Low_complexity 1 29 0 918 285 133 32 chr4 74277186 74278169 -110010493 + L1M1 LINE L1 4729 5828 -389 257 211 129 33 chr4 74278139 74278288 -110010374 + L1MB1 LINE L1 5338 5478 -688 * 2330 155 46 10 chr4 74278273 74278696 -110009966 + L1MB1 LINE L1 5689 6129 -39 182 360 114 26 chr4 74279915 74280029 -110008633 + L3 LINE CR1 422 545 -1032 22 70 0 0 chr4 74281363 74281406 -110007256 + AT_rich Low_complexity Low_complexity 1 43 0 311 225 7 94 chr4 74281575 74281713 -110006949 - MIR SINE MIR -13 249 124 183 156 0 0 chr4 74281942 74281974 -110006688 + A-rich Low_complexity Low_complexity 1 32 0 765 135 0 0 chr4 74282086 74282212 -110006450 + (CA)n Simple_repeat Simple_repeat 2 127 0 675 237 34 39 chr4 74282894 74283101 -110005561 - L1ME3A LINE L1 -22 6148 5943 247 329 114 7 chr4 74283106 74283246 -110005416 - MIR3 SINE MIR -52 156 2 330 214 0 61 chr4 74285172 74285270 -110003392 - L1MC4 LINE L1 -1339 6703 6612 26 30 0 0 chr4 74285751 74285784 -110002878 + AT_rich Low_complexity Low_complexity 1 33 0 292 282 53 49 chr4 74288465 74288655 -110000007 + LTR16A1 LTR ERVL 25 217 -240 1428 218 33 27 chr4 74289304 74289635 -109999027 - MLT1D LTR MaLR 0 505 173 43001 49 3 3 chr4 74289644 74295794 -109992868 + L1PA4 LINE L1 2 6151 -4 26 0 0 0 chr4 74295794 74295820 -109992842 + AT_rich Low_complexity Low_complexity 1 26 0 562 172 60 60 chr4 74295820 74295954 -109992708 - MLT1D LTR MaLR -368 137 4 210 276 112 43 chr4 74296372 74296488 -109992174 - MIR3 SINE MIR -27 181 58 294 167 0 0 chr4 74296516 74296576 -109992086 + GA-rich Low_complexity Low_complexity 4 63 0 2907 20 0 3 chr4 74296576 74296919 -109991743 + L1PA2 LINE L1 5814 6155 0 24 67 0 0 chr4 74297245 74297290 -109991372 + AT_rich Low_complexity Low_complexity 1 45 0 202 328 78 82 chr4 74298160 74298308 -109990354 + L2 LINE L2 2976 3124 -148 837 289 19 0 chr4 74298308 74298564 -109990098 + MIR SINE MIR 2 262 0 202 328 78 82 chr4 74298564 74298647 -109990015 + L2 LINE L2 3124 3206 -66 925 280 12 12 chr4 74299108 74299365 -109989297 + MIR SINE MIR 6 262 0 205 352 34 23 chr4 74299911 74299999 -109988663 - MIR SINE MIR -101 107 19 400 355 22 35 chr4 74300057 74300457 -109988205 + L1MCc LINE L1 69 463 -5960 858 282 53 75 chr4 74300845 74301979 -109986683 + L1MCc LINE L1 1129 2453 -4669 2490 75 0 0 chr4 74301980 74302288 -109986374 + AluY SINE Alu 1 308 -3 4473 198 52 63 chr4 74302318 74303210 -109985452 + L1MA7 LINE L1 3903 4804 -1487 2221 104 6 25 chr4 74303210 74303526 -109985136 + AluSx SINE Alu 1 310 -2 4473 198 52 63 chr4 74303526 74305038 -109983624 + L1MA7 LINE L1 4804 6283 -8 1791 236 69 28 chr4 74305067 74305643 -109983019 + L1ME1 LINE L1 5547 6146 -20 1798 180 22 48 chr4 74305643 74306043 -109982619 + MLT1B LTR MaLR 1 390 0 292 277 63 44 chr4 74306043 74306073 -109982589 + L1MA10 LINE L1 6302 6330 -4 976 133 0 118 chr4 74306081 74306276 -109982386 + AluJb SINE Alu 1 172 -140 294 306 108 38 chr4 74306818 74307004 -109981658 - MIR3 SINE MIR -7 201 3 770 152 0 8 chr4 74307299 74307424 -109981238 - FLAM_C SINE Alu -18 125 2 23 54 0 0 chr4 74307434 74307471 -109981191 + AT_rich Low_complexity Low_complexity 1 37 0 257 386 86 12 chr4 74307993 74308156 -109980506 + L2 LINE L2 2890 3064 -208 21 57 0 0 chr4 74308681 74308716 -109979946 + AT_rich Low_complexity Low_complexity 1 35 0 257 272 171 45 chr4 74308798 74309044 -109979618 - L1ME LINE L1 -340 5781 5505 507 271 78 31 chr4 74309584 74309776 -109978886 - MIR SINE MIR -28 234 34 1627 201 10 0 chr4 74310098 74310391 -109978271 + AluJo SINE Alu 6 301 -11 297 219 79 18 chr4 74310729 74310843 -109977819 + L1M4 LINE L1 2912 3032 -3114 13915 151 27 27 chr4 74310863 74312289 -109976373 + Tigger1 DNA MER2_type 1 1430 -988 1392 206 11 14 chr4 74312289 74312575 -109976087 + AluJo SINE Alu 2 286 -16 13915 151 27 27 chr4 74312575 74313565 -109975097 + Tigger1 DNA MER2_type 1430 2418 0 1281 281 129 13 chr4 74313578 74314266 -109974396 + L1M4 LINE L1 3070 3837 -2309 231 278 19 0 chr4 74314370 74314424 -109974238 + L2 LINE L2 2989 3043 -229 856 209 76 115 chr4 74314578 74315144 -109973518 + HAL1 LINE L1 1113 1656 -851 848 129 0 50 chr4 74315145 74315284 -109973378 - FLAM_C SINE Alu -11 132 1 686 256 212 36 chr4 74315306 74315778 -109972884 + HAL1 LINE L1 1668 2222 -285 186 189 0 0 chr4 74315934 74315971 -109972691 + GA-rich Low_complexity Low_complexity 1 37 0 714 227 78 116 chr4 74316115 74316512 -109972150 + MER34 LTR ERV1 1 382 -183 1222 227 93 0 chr4 74316603 74316881 -109971781 - AluJo SINE Alu -8 304 1 742 133 0 0 chr4 74317086 74317191 -109971471 + FLAM_C SINE Alu 16 120 -23 21 0 0 0 chr4 74317192 74317213 -109971449 + AT_rich Low_complexity Low_complexity 1 21 0 1107 230 9 9 chr4 74317388 74317601 -109971061 + AluSx SINE Alu 1 213 -99 279 0 0 0 chr4 74317980 74318011 -109970651 + (CA)n Simple_repeat Simple_repeat 2 32 0 253 250 0 0 chr4 74318012 74318064 -109970598 - MER31-int LTR ERV1 -757 4179 4128 2096 108 7 3 chr4 74318067 74318355 -109970307 - AluY SINE Alu -16 295 7 1798 168 56 21 chr4 74318701 74318899 -109969763 - MLT1A1 LTR MaLR 0 365 149 1978 110 16 26 chr4 74318899 74319209 -109969453 + AluSx SINE Alu 1 307 -5 1798 168 56 21 chr4 74319209 74319350 -109969312 - MLT1A1 LTR MaLR -216 149 14 191 254 119 0 chr4 74319713 74319780 -109968882 - L2 LINE L2 -1 3312 3238 378 298 56 45 chr4 74320707 74320885 -109967777 + MER5A DNA MER1_type 10 189 0 243 242 0 0 chr4 74321128 74321190 -109967472 + (CA)n Simple_repeat Simple_repeat 1 62 0 667 277 119 40 chr4 74321196 74321575 -109967087 - L2 LINE L2 0 3313 2905 485 257 87 100 chr4 74321644 74321944 -109966718 + AluJo SINE Alu 4 299 -3 350 315 167 19 chr4 74322302 74322464 -109966198 - MER5A DNA MER1_type 0 189 4 194 276 43 112 chr4 74323323 74323439 -109965223 - MER5A DNA MER1_type -22 167 60 1627 171 65 0 chr4 74323447 74323739 -109964923 - AluJb SINE Alu -1 311 1 1313 187 88 22 chr4 74323749 74324022 -109964640 - AluJb SINE Alu -21 291 1 23 33 0 0 chr4 74325255 74325285 -109963377 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr4 74326503 74326529 -109962133 + AT_rich Low_complexity Low_complexity 1 26 0 477 287 33 13 chr4 74326635 74326785 -109961877 - MIR SINE MIR -71 191 39 23 33 0 0 chr4 74327263 74327293 -109961369 + AT_rich Low_complexity Low_complexity 1 30 0 2481 77 3 0 chr4 74327431 74327741 -109960921 + AluSp SINE Alu 1 311 -2 198 167 0 0 chr4 74328139 74328175 -109960487 + (CA)n Simple_repeat Simple_repeat 1 36 0 25 0 0 0 chr4 74329108 74329133 -109959529 + AT_rich Low_complexity Low_complexity 1 25 0 766 169 105 29 chr4 74329291 74329463 -109959199 + MIR SINE MIR 77 261 -1 346 178 128 48 chr4 74330580 74330724 -109957938 - MLT1I LTR MaLR 0 409 332 280 305 0 21 chr4 74330801 74330896 -109957766 - MLT1I LTR MaLR -292 257 165 273 98 0 0 chr4 74331367 74331408 -109957254 + (T)n Simple_repeat Simple_repeat 1 41 0 432 172 54 24 chr4 74332806 74333006 -109955656 + AluJo SINE Alu 1 292 -20 1038 152 0 0 chr4 74333044 74333202 -109955460 - MER70B LTR ERVL -420 158 1 183 219 49 0 chr4 74333211 74333252 -109955410 - L2 LINE L2 -10 3303 3261 434 277 81 35 chr4 74333439 74333747 -109954915 - MLT1J2 LTR MaLR -64 447 61 232 315 139 0 chr4 74334007 74334115 -109954547 - MIR3 SINE MIR -36 172 50 936 173 23 12 chr4 74334546 74334719 -109953943 - MER20 DNA MER1_type -4 215 41 1463 209 95 24 chr4 74335418 74335827 -109952835 - MLT1C LTR MaLR 0 467 21 2148 99 41 0 chr4 74336475 74336604 -109952058 + AluSx SINE Alu 1 123 -189 414 0 0 0 chr4 74336604 74336650 -109952012 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 2148 99 41 0 chr4 74336650 74336813 -109951849 + AluSx SINE Alu 123 305 -7 2731 164 28 9 chr4 74337187 74337650 -109951012 - MER70A LTR ERVL 0 472 1 267 233 13 80 chr4 74338580 74338730 -109949932 - Charlie7 DNA MER1_type 0 2612 2473 314 301 87 19 chr4 74340327 74340430 -109948232 - L2 LINE L2 -9 3263 3154 230 339 0 0 chr4 74340624 74340686 -109947976 - L2 LINE L2 -10 3262 3201 188 241 24 96 chr4 74342310 74342393 -109946269 + MIR SINE MIR 186 262 0 310 287 123 33 chr4 74342478 74342600 -109946062 - L3b LINE CR1 -26 1557 1425 347 319 42 8 chr4 74342738 74342857 -109945805 - L2 LINE L2 -1 3271 3149 266 300 179 47 chr4 74344100 74344290 -109944372 - MIR SINE MIR -15 247 33 1803 152 76 34 chr4 74344872 74345424 -109943238 + L1MD1 LINE L1 5569 6242 0 835 141 39 0 chr4 74345428 74345556 -109943106 + AluJb SINE Alu 1 133 -179 916 185 22 22 chr4 74345605 74345783 -109942879 + AluJb SINE Alu 121 298 -14 378 0 0 0 chr4 74345783 74345825 -109942837 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 9445 180 28 23 chr4 74346128 74348477 -109940185 + L1PA16 LINE L1 3139 5513 -653 1897 157 50 19 chr4 74348477 74348841 -109939821 + THE1C LTR MaLR 1 375 0 9445 180 28 23 chr4 74348841 74349498 -109939164 + L1PA16 LINE L1 5513 6165 -1 377 361 33 39 chr4 74349628 74349958 -109938704 - L2 LINE L2 -1634 1680 1353 231 299 75 0 chr4 74350661 74350728 -109937934 + L2 LINE L2 3184 3255 -17 257 73 0 24 chr4 74350808 74350849 -109937813 + (GGAA)n Simple_repeat Simple_repeat 3 42 0 2161 75 0 0 chr4 74351662 74351928 -109936734 - AluY SINE Alu -12 299 34 797 245 43 28 chr4 74352482 74352735 -109935927 - MIR SINE MIR -4 258 2 2060 189 123 47 chr4 74352801 74353003 -109935659 + MER39 LTR ERV1 1 186 -521 1980 121 4 0 chr4 74353003 74353283 -109935379 + AluSx SINE Alu 1 281 -31 2060 189 123 47 chr4 74353283 74353658 -109935004 + MER39 LTR ERV1 186 636 -71 1736 143 6 68 chr4 74353658 74353979 -109934683 - AluJb SINE Alu -11 301 1 2060 189 123 47 chr4 74353979 74354057 -109934605 + MER39 LTR ERV1 636 707 0 696 256 80 23 chr4 74354168 74354469 -109934193 - L1M4 LINE L1 -3132 3014 2697 23 0 0 0 chr4 74354854 74354877 -109933785 + GC_rich Low_complexity Low_complexity 1 23 0 465 103 0 0 chr4 74355896 74355964 -109932698 + (CA)n Simple_repeat Simple_repeat 1 68 0 183 307 27 40 chr4 74356677 74356752 -109931910 + L3 LINE CR1 1308 1381 -196 21 36 0 0 chr4 74357815 74357843 -109930819 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr4 74358500 74358523 -109930139 + (TGG)n Simple_repeat Simple_repeat 2 24 0 663 48 0 0 chr4 74358523 74358606 -109930056 + (CTG)n Simple_repeat Simple_repeat 1 83 0 391 223 65 22 chr4 74359678 74359817 -109928845 - L1ME4a LINE L1 -4 6117 5973 1729 145 22 13 chr4 74359865 74360183 -109928479 - L1MA5A LINE L1 0 6297 5977 6235 97 2 1 chr4 74360252 74361086 -109927576 + THE1A-int LTR MaLR 746 1580 0 2414 80 47 3 chr4 74361086 74361425 -109927237 + THE1A LTR MaLR 1 354 -1 2032 135 0 3 chr4 74361470 74361758 -109926904 - AluSx SINE Alu -25 287 1 1099 149 201 80 chr4 74362048 74362343 -109926319 + MER90 LTR ERV1 1 346 -229 1335 153 165 11 chr4 74362343 74362604 -109926058 - AluJo SINE Alu 0 302 2 1099 149 201 80 chr4 74362604 74362657 -109926005 + MER90 LTR ERV1 346 391 -184 1712 106 4 0 chr4 74362659 74362895 -109925767 + AluSq SINE Alu 75 311 -2 305 253 152 10 chr4 74362943 74363042 -109925620 - MIR SINE MIR -2 260 148 21 71 0 0 chr4 74364649 74364691 -109923971 + AT_rich Low_complexity Low_complexity 1 42 0 206 194 16 0 chr4 74365093 74365155 -109923507 + (TA)n Simple_repeat Simple_repeat 1 63 0 232 324 110 7 chr4 74365853 74365998 -109922664 + L2 LINE L2 2601 2760 -554 23 33 0 0 chr4 74366536 74366566 -109922096 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 74367564 74367585 -109921077 + AT_rich Low_complexity Low_complexity 1 21 0 262 208 208 57 chr4 74368547 74368653 -109920009 + L2 LINE L2 3189 3310 -3 201 74 0 0 chr4 74368742 74368769 -109919893 + (A)n Simple_repeat Simple_repeat 1 27 0 253 347 107 0 chr4 74369065 74369186 -109919476 - MIR SINE MIR -109 153 20 1336 143 42 0 chr4 74369198 74369414 -109919248 - L1PB4 LINE L1 -8 6148 5924 554 219 20 27 chr4 74369436 74369582 -109919080 - MER119 DNA MER1_type 0 583 439 404 266 147 0 chr4 74369572 74369681 -109918981 - MER119 DNA MER1_type -455 128 4 * 1502 259 84 58 chr4 74371613 74372256 -109916406 + HAL1 LINE L1 532 1208 -1299 2313 96 0 0 chr4 74372256 74372549 -109916113 + AluSq SINE Alu 1 293 -20 1502 259 84 58 chr4 74372549 74372823 -109915839 + HAL1 LINE L1 1208 1473 -1034 247 218 18 18 chr4 74373308 74373363 -109915299 + L2 LINE L2 3259 3313 0 465 301 84 0 chr4 74373432 74373598 -109915064 + MIR SINE MIR 23 202 -60 272 303 50 0 chr4 74373599 74373698 -109914964 + MIR SINE MIR 117 220 -42 442 164 0 0 chr4 74373772 74373845 -109914817 + AluSx SINE Alu 1 73 -239 301 185 0 0 chr4 74373845 74373899 -109914763 + AluSx SINE Alu 20 73 -230 243 182 15 61 chr4 74374029 74374095 -109914567 - L2 LINE L2 0 3313 3251 1393 160 0 4 chr4 74374110 74374335 -109914327 + AluSx SINE Alu 83 306 -6 2088 47 0 0 chr4 74374615 74374870 -109913792 + L1PA8 LINE L1 5408 5662 -492 729 52 42 0 chr4 74374896 74374992 -109913670 + L1PA8 LINE L1 6066 6165 -7 1891 249 64 70 chr4 74375185 74375932 -109912730 + MER21B LTR ERV1 13 755 -108 256 328 70 23 chr4 74376359 74376487 -109912175 - L3 LINE CR1 -1109 468 335 509 263 214 10 chr4 74376702 74377053 -109911609 + L1MC5 LINE L1 7109 7407 -401 307 254 42 8 chr4 74377414 74377532 -109911130 + L1MC4 LINE L1 7920 8041 -1 284 321 73 32 chr4 74377734 74377952 -109910710 - MIR SINE MIR -6 256 30 2836 80 5 3 chr4 74378371 74378745 -109909917 - THE1C LTR MaLR 0 375 1 1723 274 77 35 chr4 74379137 74380027 -109908635 - L2 LINE L2 0 3313 2392 1852 141 3 39 chr4 74380067 74380373 -109908289 - AluJb SINE Alu -13 299 5 518 223 65 7 chr4 74380394 74380556 -109908106 - LTR40b LTR ERVL -141 341 163 256 132 0 0 chr4 74380558 74380596 -109908066 + LTR40a LTR ERVL 482 519 0 522 308 6 0 chr4 74380603 74380762 -109907900 - L2 LINE L2 -929 2385 2226 2038 125 20 7 chr4 74380859 74381156 -109907506 + AluSx SINE Alu 1 301 -11 21 71 0 0 chr4 74381706 74381748 -109906914 + AT_rich Low_complexity Low_complexity 1 42 0 209 197 92 79 chr4 74381826 74381902 -109906760 + MIR3 SINE MIR 109 185 -23 5180 205 58 33 chr4 74382177 74383443 -109905219 + L1MB7 LINE L1 16 1313 -5229 1683 199 0 7 chr4 74383450 74383757 -109904905 + AluJb SINE Alu 3 307 -5 3052 214 27 25 chr4 74383765 74384562 -109904100 + L1MB7 LINE L1 2732 3533 -3111 2267 97 0 3 chr4 74384562 74384862 -109903800 + AluY SINE Alu 1 299 -12 3052 214 27 25 chr4 74384862 74384916 -109903746 + L1MB7 LINE L1 3533 3585 -3059 1153 101 0 0 chr4 74384916 74385074 -109903588 + AluY SINE Alu 143 300 -11 509 209 158 51 chr4 74385075 74385348 -109903314 + L1MB7 LINE L1 3577 3878 -2766 6278 175 66 81 chr4 74385351 74385976 -109902686 + L1MB7 LINE L1 3795 4428 -2254 2094 108 3 25 chr4 74385976 74386292 -109902370 + AluSq SINE Alu 1 309 -4 6278 175 66 81 chr4 74386292 74386652 -109902010 + L1MB7 LINE L1 4428 4792 -1890 1360 202 69 18 chr4 74386652 74386929 -109901733 + AluJo SINE Alu 3 293 -19 6278 175 66 81 chr4 74386929 74387061 -109901601 + L1MB7 LINE L1 4792 4924 -1758 292 136 0 0 chr4 74387061 74387105 -109901557 + MER4D LTR ERV1 760 803 -69 6278 175 66 81 chr4 74387105 74387139 -109901523 + L1MB7 LINE L1 4924 4957 -1725 2069 123 0 7 chr4 74387139 74387439 -109901223 - AluSg SINE Alu -12 298 1 6278 175 66 81 chr4 74387439 74389168 -109899494 + L1MB7 LINE L1 4957 6665 -17 1603 152 61 18 chr4 74389450 74389727 -109898935 + AluSx SINE Alu 1 289 -23 27 0 0 0 chr4 74389886 74389913 -109898749 + AT_rich Low_complexity Low_complexity 1 27 0 2168 125 0 0 chr4 74389979 74390291 -109898371 + AluSx SINE Alu 1 312 0 315 342 87 35 chr4 74390315 74390625 -109898037 + L1ME4a LINE L1 4769 5094 -1052 441 236 38 0 chr4 74390954 74391099 -109897563 + L1MEc LINE L1 1543 1711 -865 187 279 16 16 chr4 74391557 74391618 -109897044 - L2 LINE L2 -641 2673 2613 351 0 0 0 chr4 74391745 74391784 -109896878 + (CA)n Simple_repeat Simple_repeat 2 40 0 1511 181 0 60 chr4 74393845 74394159 -109894503 - AluJb SINE Alu -1 311 17 1782 139 19 32 chr4 74394490 74394800 -109893862 - AluJo SINE Alu -6 306 1 1040 263 0 5 chr4 74394834 74395058 -109893604 + MER58A DNA MER1_type 1 223 -1 1950 183 8 11 chr4 74395389 74395756 -109892906 - MER47A DNA MER2_type 0 366 1 544 299 62 22 chr4 74395990 74396264 -109892398 + L1ME4a LINE L1 5482 5766 -355 309 268 152 7 chr4 74396370 74396508 -109892154 + L1ME4a LINE L1 5957 6114 -7 2295 92 0 0 chr4 74396820 74397114 -109891548 + AluSg SINE Alu 1 294 -16 29 47 0 0 chr4 74398310 74398353 -109890309 + AT_rich Low_complexity Low_complexity 1 43 0 450 0 0 0 chr4 74398815 74398865 -109889797 + (CA)n Simple_repeat Simple_repeat 2 51 0 21 0 0 0 chr4 74399172 74399193 -109889469 + AT_rich Low_complexity Low_complexity 1 21 0 2033 104 56 0 chr4 74399203 74399490 -109889172 + AluSx SINE Alu 1 303 -9 451 249 173 52 chr4 74399680 74399853 -109888809 - L2 LINE L2 -1 3312 3119 538 237 37 15 chr4 74400269 74400404 -109888258 - AluJo SINE Alu -59 253 116 234 0 0 0 chr4 74400524 74400550 -109888112 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1945 133 3 19 chr4 74400554 74400862 -109887800 + AluJb SINE Alu 1 303 -9 702 177 109 34 chr4 74401575 74401750 -109886912 - MLT1L LTR MaLR -7 608 421 708 138 6 38 chr4 74401807 74401967 -109886695 + (TTCCC)n Simple_repeat Simple_repeat 5 159 0 410 287 82 0 chr4 74401970 74402092 -109886570 - AluJo SINE Alu -169 133 2 1569 181 3 54 chr4 74402126 74402440 -109886222 + AluJo SINE Alu 1 298 -14 197 33 33 0 chr4 74402471 74402501 -109886161 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 784 218 11 11 chr4 74403056 74403230 -109885432 - FAM SINE Alu -1 174 1 840 143 8 15 chr4 74403593 74403726 -109884936 + FLAM_C SINE Alu 1 132 -1 510 269 68 10 chr4 74403880 74404041 -109884621 - MER5B DNA MER1_type -23 155 1 302 157 28 37 chr4 74404400 74404508 -109884154 + (TAA)n Simple_repeat Simple_repeat 3 109 0 1968 168 35 17 chr4 74404651 74404997 -109883665 + MLT1A1 LTR MaLR 14 365 0 730 342 42 0 chr4 74405070 74405330 -109883332 + L3 LINE CR1 1016 1286 -291 839 131 0 0 chr4 74406555 74406677 -109881985 + FLAM_C SINE Alu 1 122 -11 246 257 0 14 chr4 74406756 74406830 -109881832 - L1MC/D LINE L1 -2048 5760 5688 2018 137 3 0 chr4 74407471 74407764 -109880898 - AluSq SINE Alu -19 294 1 267 175 63 0 chr4 74407875 74407938 -109880724 - L1MC4 LINE L1 0 8042 7976 1806 161 45 21 chr4 74407938 74408274 -109880388 - MER2 DNA MER2_type 0 344 1 2080 93 6 65 chr4 74408296 74408617 -109880045 + AluSc SINE Alu 1 302 -7 735 161 8 0 chr4 74408620 74408738 -109879924 - AluJo/FLAM SINE Alu -182 120 2 262 164 18 0 chr4 74408743 74408798 -109879864 - L1MC4 LINE L1 -62 7980 7925 277 259 93 19 chr4 74409165 74409273 -109879389 - LTR16C LTR ERVL -36 455 340 1824 203 112 15 chr4 74409427 74409941 -109878721 + Charlie5 DNA MER1_type 2026 2597 -27 2062 130 0 3 chr4 74409941 74410242 -109878420 - AluSx SINE Alu -12 300 1 1824 203 112 15 chr4 74410242 74410273 -109878389 + Charlie5 DNA MER1_type 2597 2624 0 848 162 0 0 chr4 74410474 74410639 -109878023 - AluSg/x SINE Alu 0 312 148 30 27 0 0 chr4 74412356 74412393 -109876269 + AT_rich Low_complexity Low_complexity 1 37 0 31 26 0 0 chr4 74414047 74414085 -109874577 + AT_rich Low_complexity Low_complexity 1 38 0 25 31 0 0 chr4 74414877 74414909 -109873753 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr4 74416006 74416030 -109872632 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4 74417111 74417133 -109871529 + AT_rich Low_complexity Low_complexity 1 22 0 244 237 26 26 chr4 74418366 74418442 -109870220 + (CATATA)n Simple_repeat Simple_repeat 1 76 0 21 0 0 0 chr4 74418801 74418822 -109869840 + AT_rich Low_complexity Low_complexity 1 21 0 854 213 25 30 chr4 74418846 74419048 -109869614 + MIR SINE MIR 49 249 -13 624 275 136 36 chr4 74419644 74419975 -109868687 - L2 LINE L2 0 3313 2950 245 250 73 10 chr4 74420918 74421014 -109867648 + HsTC2 DNA Tc2 2 103 -1795 407 360 147 18 chr4 74421061 74421441 -109867221 - L2 LINE L2 -9 3304 2876 2003 36 12 0 chr4 74422607 74422858 -109865804 + LTR17 LTR ERV1 73 326 -454 203 103 26 0 chr4 74422860 74422899 -109865763 + A-rich Low_complexity Low_complexity 2 41 0 3253 88 16 13 chr4 74423141 74423593 -109865069 + MLT2A2 LTR ERVL 1 453 0 696 286 46 55 chr4 74423614 74424112 -109864550 + MLT1H LTR MaLR 1 549 0 22 35 0 0 chr4 74424154 74424183 -109864479 + AT_rich Low_complexity Low_complexity 1 29 0 1960 131 47 47 chr4 74424828 74425188 -109863474 + THE1B LTR MaLR 5 364 0 1284 196 93 29 chr4 74425221 74425501 -109863161 + AluJo SINE Alu 1 298 -14 309 216 108 72 chr4 74425620 74425668 -109862994 + HAL1 LINE L1 1019 1064 -1443 1870 166 3 20 chr4 74425668 74425970 -109862692 + AluSx SINE Alu 1 297 -15 309 216 108 72 chr4 74425970 74426171 -109862491 + HAL1 LINE L1 1064 1277 -1230 884 275 68 12 chr4 74426191 74426605 -109862057 + HAL1 LINE L1 1373 1809 -698 254 277 36 71 chr4 74426617 74426724 -109861938 + HAL1 LINE L1 1864 1960 -547 2294 99 0 0 chr4 74426724 74427027 -109861635 - AluY SINE Alu -8 303 1 254 277 36 71 chr4 74427027 74427143 -109861519 + HAL1 LINE L1 1960 2079 -428 373 256 69 12 chr4 74427402 74427513 -109861149 + HAL1 LINE L1 2335 2459 -48 2415 69 3 13 chr4 74427513 74427819 -109860843 - AluY SINE Alu -8 303 1 373 256 69 12 chr4 74427819 74427867 -109860795 + HAL1 LINE L1 2459 2503 -4 2463 64 0 0 chr4 74428602 74428899 -109859763 + AluY SINE Alu 1 297 -14 238 99 99 14 chr4 74429869 74429940 -109858722 + Charlie7 DNA MER1_type 66 142 -2470 634 263 107 6 chr4 74429955 74430320 -109858342 + Charlie7 DNA MER1_type 280 681 -1931 938 185 121 67 chr4 74430831 74431145 -109857517 + L1M4 LINE L1 5488 5818 -356 226 268 28 0 chr4 74431247 74431318 -109857344 + GA-rich Low_complexity Low_complexity 1 73 0 6936 146 21 11 chr4 74431699 74432985 -109855677 + Tigger1 DNA MER2_type 21 1293 -1125 1487 149 0 90 chr4 74432985 74433286 -109855376 + AluSx SINE Alu 1 274 -38 773 94 0 8 chr4 74433291 74433408 -109855254 + (GAGAA)n Simple_repeat Simple_repeat 4 119 0 6936 146 21 11 chr4 74433408 74433650 -109855012 + Tigger1 DNA MER2_type 1296 1624 -794 1443 151 21 28 chr4 74433750 74433808 -109854854 + Tigger1 DNA MER2_type 2019 2076 -342 1080 58 7 0 chr4 74433808 74433946 -109854716 - MER85 DNA T2_type 0 139 1 1443 151 21 28 chr4 74433946 74434171 -109854491 + Tigger1 DNA MER2_type 2076 2300 -118 1467 107 86 0 chr4 74434171 74434414 -109854248 + MER21A LTR ERV1 1 264 -667 1459 170 47 11 chr4 74434419 74434695 -109853967 + MER21A LTR ERV1 376 661 -270 591 155 17 9 chr4 74434695 74434811 -109853851 - MLT2A1 LTR ERVL -206 238 122 2935 168 37 18 chr4 74434813 74435085 -109853577 + MER21-int LTR ERV1 2208 2473 -1718 261 0 0 0 chr4 74435085 74435114 -109853548 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2935 168 37 18 chr4 74435114 74435816 -109852846 + MER21-int LTR ERV1 2473 3260 -931 707 147 26 0 chr4 74435817 74435933 -109852729 + Tigger1 DNA MER2_type 2299 2417 -1 569 172 20 113 chr4 74436118 74436269 -109852393 - MER2 DNA MER2_type -207 138 2 1978 146 0 16 chr4 74436372 74436680 -109851982 + AluSx SINE Alu 1 303 -9 506 307 66 8 chr4 74437136 74437393 -109851269 + MLT1L LTR MaLR 3 274 -341 2164 105 6 22 chr4 74437630 74437943 -109850719 - AluSq SINE Alu -5 308 1 2217 147 28 0 chr4 74438240 74438594 -109850068 + THE1B LTR MaLR 1 364 0 225 270 35 104 chr4 74439077 74439192 -109849470 - MER5A DNA MER1_type -6 183 77 306 297 0 22 chr4 74439193 74439284 -109849378 + L1MC4 LINE L1 6614 6702 -1340 * 329 232 62 36 chr4 74439217 74439329 -109849333 - L1MC4 LINE L1 -1324 6718 6604 204 172 0 0 chr4 74439329 74439387 -109849275 + (TA)n Simple_repeat Simple_repeat 2 59 0 265 200 13 13 chr4 74440251 74440326 -109848336 + (CCG)n Simple_repeat Simple_repeat 2 76 0 301 311 114 78 chr4 74440359 74440998 -109847664 - L1M2 LINE L1 -5718 1131 470 216 290 170 10 chr4 74441484 74441584 -109847078 - MIR3 SINE MIR -88 120 5 198 0 0 0 chr4 74441689 74441711 -109846951 + (A)n Simple_repeat Simple_repeat 1 22 0 358 241 63 63 chr4 74441801 74441975 -109846687 - Charlie8 DNA MER1_type -2141 276 103 1238 149 0 63 chr4 74442553 74442774 -109845888 + AluJo SINE Alu 56 262 -50 1631 158 0 29 chr4 74442809 74443088 -109845574 + AluJb SINE Alu 12 282 -30 794 269 41 41 chr4 74443930 74444220 -109844442 - L2 LINE L2 0 3313 3024 221 273 23 45 chr4 74445707 74445795 -109842867 - MER5A DNA MER1_type -8 181 96 * 381 141 13 51 chr4 74445722 74445800 -109842862 + MER5A DNA MER1_type 35 109 -80 391 324 101 0 chr4 74445882 74446030 -109842632 - MER5A DNA MER1_type -3 186 24 378 0 0 0 chr4 74446214 74446256 -109842406 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 369 0 0 0 chr4 74446309 74446350 -109842312 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1410 172 30 15 chr4 74446371 74446633 -109842029 - AluJb SINE Alu -46 266 1 3133 148 38 95 chr4 74446816 74447587 -109841075 + LTR8A LTR ERV1 1 727 0 1040 242 5 5 chr4 74447587 74447802 -109840860 + HUERS-P1 LTR ERV1 1 215 -6048 342 271 10 10 chr4 74448155 74448251 -109840411 - MIR3 SINE MIR -24 184 89 423 282 139 38 chr4 74450621 74450937 -109837725 - L1MCa LINE L1 -5101 1325 978 4711 78 55 1 chr4 74450977 74451635 -109837027 + L1PA10 LINE L1 5465 6157 -11 235 290 56 0 chr4 74452317 74452424 -109836238 - L1M4 LINE L1 -1542 4604 4492 349 238 168 64 chr4 74452458 74452756 -109835906 - L1M4 LINE L1 -2220 3926 3598 538 287 100 24 chr4 74452911 74453200 -109835462 - L1M4 LINE L1 -2716 3430 3120 408 244 97 51 chr4 74453379 74453555 -109835107 + MER5A DNA MER1_type 1 184 -5 3059 259 95 42 chr4 74453852 74456938 -109831724 - L1MC4 LINE L1 -3 8039 4763 4172 167 22 21 chr4 74457321 74458208 -109830454 - L1PA11 LINE L1 -2546 3600 2713 10237 145 23 6 chr4 74458211 74460735 -109827927 + L1PA11 LINE L1 3624 6173 -1 463 216 14 178 chr4 74460839 74461052 -109827610 - MER91B DNA MER1_type -11 179 2 2954 115 0 0 chr4 74461122 74461541 -109827121 + L1PA11 LINE L1 5756 6174 0 263 313 106 73 chr4 74462363 74462542 -109826120 + MIR SINE MIR 4 188 -74 835 198 60 0 chr4 74462962 74463144 -109825518 + MER3 DNA MER1_type 17 209 0 505 340 32 0 chr4 74465319 74465507 -109823155 - MIR SINE MIR 0 262 69 1534 199 27 63 chr4 74465850 74466043 -109822619 - MSTD LTR MaLR 0 396 224 189 0 0 0 chr4 74466043 74466064 -109822598 + (GA)n Simple_repeat Simple_repeat 2 22 0 1534 199 27 63 chr4 74466064 74466281 -109822381 - MSTD LTR MaLR -172 224 1 474 351 111 34 chr4 74466886 74467211 -109821451 - L2 LINE L2 -7 3265 2916 6606 30 0 0 chr4 74467215 74468053 -109820609 - L1PA3 LINE L1 -747 5399 4562 6361 32 0 0 chr4 74468053 74468798 -109819864 + L1PA3 LINE L1 5405 6155 0 844 304 142 46 chr4 74468839 74469516 -109819146 - L2 LINE L2 -422 2892 2151 706 187 0 72 chr4 74470069 74470235 -109818427 + MER63 DNA MER1_type 6 785 -277 21 57 0 0 chr4 74470928 74470963 -109817699 + AT_rich Low_complexity Low_complexity 1 35 0 751 117 55 7 chr4 74471118 74471263 -109817399 + L1MA3 LINE L1 6154 6305 0 384 273 72 29 chr4 74473358 74473497 -109815165 + L2 LINE L2 3169 3313 0 194 247 222 0 chr4 74473949 74474030 -109814632 - MIR SINE MIR -65 143 45 21 0 0 0 chr4 74474429 74474450 -109814212 + AT_rich Low_complexity Low_complexity 1 21 0 627 267 102 6 chr4 74475587 74475763 -109812899 - MIR SINE MIR -57 205 13 2106 117 7 0 chr4 74475851 74476150 -109812512 + AluY SINE Alu 11 311 0 25 31 0 0 chr4 74476826 74476858 -109811804 + AT_rich Low_complexity Low_complexity 1 32 0 3803 95 8 0 chr4 74476858 74477383 -109811279 - L1PA16 LINE L1 -9 6157 5629 396 59 0 0 chr4 74477414 74477465 -109811197 + (CA)n Simple_repeat Simple_repeat 2 52 0 25 0 0 0 chr4 74478047 74478072 -109810590 + AT_rich Low_complexity Low_complexity 1 25 0 360 300 101 22 chr4 74479905 74480087 -109808575 - MIR3 SINE MIR -5 203 11 239 246 0 18 chr4 74480171 74480228 -109808434 + CT-rich Low_complexity Low_complexity 2 57 0 206 189 0 19 chr4 74480242 74480295 -109808367 + CT-rich Low_complexity Low_complexity 2 53 0 1513 183 0 11 chr4 74480495 74480769 -109807893 + AluJo SINE Alu 41 311 -1 21 36 0 0 chr4 74481229 74481257 -109807405 + AT_rich Low_complexity Low_complexity 1 28 0 1241 172 117 40 chr4 74482615 74482888 -109805774 - AluJo SINE Alu -14 298 5 1349 248 65 114 chr4 74483687 74484405 -109804257 - MER21B LTR ERV1 -157 706 24 743 250 102 10 chr4 74486330 74486526 -109802136 + MIR SINE MIR 7 220 -42 240 167 21 0 chr4 74487909 74487957 -109800705 - L1ME LINE L1 -259 5862 5814 * 5370 111 13 0 chr4 74487956 74488716 -109799946 + L1PA15 LINE L1 5391 6160 -5 2345 84 3 0 chr4 74488783 74489080 -109799582 + AluSx SINE Alu 1 298 -14 343 267 104 0 chr4 74489085 74489220 -109799442 - L1ME LINE L1 -360 5761 5613 248 318 0 0 chr4 74490171 74490237 -109798425 + MIR SINE MIR 41 106 -156 337 308 53 8 chr4 74490496 74490629 -109798033 + MIR3 SINE MIR 6 144 -64 25 0 0 0 chr4 74490852 74490877 -109797785 + AT_rich Low_complexity Low_complexity 1 25 0 693 221 82 26 chr4 74491910 74492105 -109796557 + MER63A DNA MER1_type 3 208 -2 437 303 136 25 chr4 74492111 74492273 -109796389 - MER91A DNA MER1_type -16 180 1 192 77 0 0 chr4 74492351 74492377 -109796285 + (TG)n Simple_repeat Simple_repeat 1 26 0 279 259 70 66 chr4 74493061 74493272 -109795390 - MIR SINE MIR -46 216 8 508 252 170 24 chr4 74493424 74493630 -109795032 + MIR SINE MIR 23 258 -4 532 197 0 14 chr4 74494661 74494803 -109793859 + CT-rich Low_complexity Low_complexity 3 142 0 749 257 16 5 chr4 74494826 74495013 -109793649 + MIR SINE MIR 15 203 -59 26 0 0 0 chr4 74495208 74495234 -109793428 + AT_rich Low_complexity Low_complexity 1 26 0 23 54 0 0 chr4 74495919 74495956 -109792706 + AT_rich Low_complexity Low_complexity 1 37 0 251 328 40 45 chr4 74497456 74497633 -109791029 + MIR3 SINE MIR 2 177 -31 23 0 0 0 chr4 74499252 74499275 -109789387 + AT_rich Low_complexity Low_complexity 1 23 0 278 197 58 66 chr4 74501083 74501220 -109787442 + MER113 DNA MER1_type? 82 217 -304 198 266 81 48 chr4 74501697 74501821 -109786841 + L2 LINE L2 2085 2212 -1102 802 324 99 27 chr4 74501834 74501865 -109786797 + L2 LINE L2 2631 2658 -655 351 44 0 0 chr4 74501865 74501910 -109786752 + (TC)n Simple_repeat Simple_repeat 1 45 0 802 324 99 27 chr4 74501910 74502512 -109786150 + L2 LINE L2 2658 3301 -12 1063 250 125 3 chr4 74503168 74503480 -109785182 + MER69 DNA AcHobo 203 552 -1974 532 207 106 11 chr4 74503481 74503660 -109785002 + MER69 DNA AcHobo 2329 2524 -2 636 238 45 25 chr4 74504110 74504312 -109784350 + L2 LINE L2 3108 3313 0 27 62 0 0 chr4 74504631 74504679 -109783983 + AT_rich Low_complexity Low_complexity 1 48 0 237 65 0 0 chr4 74506769 74506800 -109781862 + (TATG)n Simple_repeat Simple_repeat 2 32 0 726 244 179 5 chr4 74508445 74508646 -109780016 + MIR SINE MIR 2 237 -25 623 223 0 36 chr4 74508641 74508780 -109779882 + MIR SINE MIR 95 228 -34 * 237 262 49 0 chr4 74509350 74509411 -109779251 - L2 LINE L2 0 3272 3209 1045 258 29 91 chr4 74509713 74509887 -109778775 + L2 LINE L2 2826 3009 -304 2435 62 0 19 chr4 74509887 74510196 -109778466 - AluY SINE Alu -8 303 1 1045 258 29 91 chr4 74510196 74510537 -109778125 + L2 LINE L2 3009 3309 -4 637 345 86 30 chr4 74510770 74511106 -109777556 + L2 LINE L2 2917 3271 -1 21 36 0 0 chr4 74513053 74513081 -109775581 + AT_rich Low_complexity Low_complexity 1 28 0 219 69 0 0 chr4 74513591 74513620 -109775042 + (CA)n Simple_repeat Simple_repeat 2 30 0 520 242 217 10 chr4 74514212 74514410 -109774252 - MIR SINE MIR -15 247 9 803 261 86 4 chr4 74514852 74515097 -109773565 + MER2 DNA MER2_type 81 345 0 11180 174 30 7 chr4 74515128 74518263 -109770399 + L1MA4 LINE L1 3070 6279 -21 186 43 0 0 chr4 74518316 74518339 -109770323 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 27 29 0 0 chr4 74518393 74518427 -109770235 + AT_rich Low_complexity Low_complexity 1 34 0 317 324 86 31 chr4 74518465 74518579 -109770083 - L1 LINE L1 -1644 4502 4396 968 158 11 0 chr4 74518579 74518763 -109769899 - L1MA8 LINE L1 -1 6290 6105 317 324 86 31 chr4 74518763 74518904 -109769758 - L1 LINE L1 -1750 4396 4233 28 95 0 0 chr4 74519582 74519666 -109768996 + AT_rich Low_complexity Low_complexity 1 84 0 2448 237 67 16 chr4 74519724 74520454 -109768208 - L1ME2 LINE L1 -9 6155 5389 2025 250 44 10 chr4 74520468 74521053 -109767609 - L1ME1 LINE L1 -5 6230 5626 3123 145 8 2 chr4 74521055 74522842 -109765820 + L1PA13 LINE L1 4212 6144 -19 1076 243 37 18 chr4 74522882 74523423 -109765239 - L1ME1 LINE L1 -614 5639 5085 * 8604 187 33 12 chr4 74523418 74526213 -109762449 - L1PA15 LINE L1 -1 6164 3301 2403 105 32 113 chr4 74526213 74526710 -109761952 - LTR46 LTR ERV1 -2 458 2 8604 187 33 12 chr4 74526710 74526832 -109761830 - L1PA15 LINE L1 -2864 3301 3183 3118 186 55 49 chr4 74526832 74527658 -109761004 - MER21A LTR ERV1 -48 815 5 228 229 29 0 chr4 74527660 74527730 -109760932 - L1ME1 LINE L1 -3156 3059 2988 2241 136 0 6 chr4 74527782 74528143 -109760519 - L1PA13 LINE L1 -11 6152 5794 1429 265 127 21 chr4 74528143 74529721 -109758941 - L1ME1 LINE L1 -3227 2988 1272 264 344 73 36 chr4 74530053 74530245 -109758417 - L2 LINE L2 -218 3054 2856 234 242 0 0 chr4 74532151 74532217 -109756445 + (TCCA)n Simple_repeat Simple_repeat 4 69 0 219 69 0 0 chr4 74532239 74532268 -109756394 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1137 183 87 48 chr4 74532519 74532771 -109755891 + AluSx SINE Alu 1 262 -50 454 164 31 23 chr4 74532777 74532905 -109755757 + GA-rich Low_complexity Low_complexity 3 131 0 314 328 34 0 chr4 74532905 74533024 -109755638 + MIR SINE MIR 19 141 -67 2171 125 7 0 chr4 74533378 74533682 -109754980 - AluSx SINE Alu -6 306 1 222 346 13 39 chr4 74534822 74534900 -109753762 - L2 LINE L2 -25 3247 3172 550 297 134 22 chr4 74535676 74535952 -109752710 - L3 LINE CR1 -2 1575 1269 199 320 93 21 chr4 74539062 74539159 -109749503 - MIR SINE MIR -85 123 20 5426 226 55 28 chr4 74539374 74540916 -109747746 - L1MC4 LINE L1 -1 8041 6459 21 0 0 0 chr4 74541459 74541480 -109747182 + AT_rich Low_complexity Low_complexity 1 21 0 1664 202 11 19 chr4 74541546 74541907 -109746755 - L1ME1 LINE L1 -1 6165 5808 8228 179 47 15 chr4 74541915 74543745 -109744917 - L1MA9 LINE L1 -150 6162 4216 195 42 0 0 chr4 74543745 74543769 -109744893 + (TG)n Simple_repeat Simple_repeat 1 24 0 8228 179 47 15 chr4 74543769 74544370 -109744292 - L1MA9 LINE L1 -2096 4216 3636 323 302 48 35 chr4 74544459 74544770 -109743892 + L1MEc LINE L1 1949 2263 -4133 435 268 44 74 chr4 74544798 74545288 -109743374 - L1MDb LINE L1 -4476 2009 1393 2374 92 0 0 chr4 74545288 74545591 -109743071 - AluY SINE Alu -7 304 2 435 268 44 74 chr4 74545591 74545759 -109742903 - L1MDb LINE L1 -5092 1393 1222 336 252 123 30 chr4 74545774 74545913 -109742749 - L1MDb LINE L1 -5066 1330 1177 354 359 60 50 chr4 74546114 74546412 -109742250 - L1MDb LINE L1 -5717 679 379 22 0 0 0 chr4 74546580 74546602 -109742060 + AT_rich Low_complexity Low_complexity 1 22 0 5741 135 29 22 chr4 74547245 74547396 -109741266 - L1PA15 LINE L1 -1 6815 6667 1936 113 71 42 chr4 74547396 74547750 -109740912 + THE1B LTR MaLR 1 364 0 5741 135 29 22 chr4 74547750 74548941 -109739721 - L1PA15 LINE L1 -149 6667 5486 287 49 24 0 chr4 74548941 74548982 -109739680 + (TTTTG)n Simple_repeat Simple_repeat 1 42 0 5741 135 29 22 chr4 74548982 74549462 -109739200 - L1PA15 LINE L1 -1330 5486 4982 1505 214 14 4 chr4 74549462 74549767 -109738895 - AluJo SINE Alu 0 309 2 5741 135 29 22 chr4 74549767 74549894 -109738768 - L1PA15 LINE L1 -1834 4982 4857 10121 219 65 23 chr4 74549897 74552475 -109736187 - L1PA15 LINE L1 -2075 4722 1860 6918 72 0 0 chr4 74552475 74553456 -109735206 - L1PA8 LINE L1 0 6172 5191 10121 219 65 23 chr4 74553456 74555399 -109733263 - L1PA15 LINE L1 -4937 1860 1 768 281 145 25 chr4 74556317 74556676 -109731986 + MLT1I LTR MaLR 8 409 0 1959 60 3 70 chr4 74557978 74558277 -109730385 - LTR66 LTR ERVL 0 610 332 546 61 0 0 chr4 74558278 74558344 -109730318 - LTR66 LTR ERVL -209 401 336 1291 94 6 11 chr4 74558380 74558561 -109730101 - LTR66 LTR ERVL -211 399 220 372 321 82 13 chr4 74558561 74558866 -109729796 - L1ME4a LINE L1 -253 5868 5543 446 309 184 45 chr4 74559253 74559812 -109728850 - L1ME4a LINE L1 -1112 5034 4398 32 75 0 0 chr4 74559851 74559918 -109728744 + AT_rich Low_complexity Low_complexity 1 67 0 21 36 0 0 chr4 74560689 74560717 -109727945 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 74562803 74562825 -109725837 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr4 74563048 74563089 -109725573 + AT_rich Low_complexity Low_complexity 1 41 0 444 330 67 20 chr4 74564302 74564648 -109724014 - L1ME3A LINE L1 -208 5962 5601 4734 64 17 2 chr4 74564648 74565666 -109722996 + MER11A LTR ERVK 1 1266 0 738 238 22 5 chr4 74566340 74566525 -109722137 + L1M4b LINE L1 2 189 -6670 * 1203 246 19 16 chr4 74566505 74566822 -109721840 + L1M4b LINE L1 863 1180 -5679 * 1606 237 54 62 chr4 74566819 74567054 -109721608 + L1M4b LINE L1 1665 1900 -5059 9859 71 14 1 chr4 74567054 74569141 -109719521 + L1PA7 LINE L1 4059 6156 0 1606 237 54 62 chr4 74569141 74569571 -109719091 + L1M4b LINE L1 1900 2326 -4633 673 148 0 0 chr4 74569585 74569693 -109718969 - L1M2 LINE L1 -629 5671 5564 4457 129 49 75 chr4 74569693 74570710 -109717952 + pTR5 LTR ERV1 745 2025 -413 366 245 10 0 chr4 74570710 74570808 -109717854 + LTR30 LTR ERV1 544 642 -80 1498 93 37 5 chr4 74570809 74571025 -109717637 + pTR5 LTR ERV1 170 392 -2046 1278 135 146 30 chr4 74571025 74571234 -109717428 - L1M2 LINE L1 -743 5569 5321 811 210 60 130 chr4 74571234 74571634 -109717028 + MLT1A2 LTR MaLR 1 372 -2 1278 135 146 30 chr4 74571634 74571691 -109716971 - L1M2 LINE L1 -991 5321 5272 1519 113 51 16 chr4 74571711 74571967 -109716695 - L1PA13 LINE L1 -16 6147 5883 573 184 19 0 chr4 74572278 74572436 -109716226 + (TA)n Simple_repeat Simple_repeat 2 162 0 261 0 0 0 chr4 74572436 74572465 -109716197 + (GA)n Simple_repeat Simple_repeat 2 30 0 289 264 21 71 chr4 74572605 74572745 -109715917 + MIR SINE MIR 129 261 -1 1472 167 12 0 chr4 74572776 74573016 -109715646 - MSTA LTR MaLR -1 427 185 6926 70 4 0 chr4 74573036 74574039 -109714623 - L1PA7 LINE L1 -3 6151 5149 6100 91 12 0 chr4 74574035 74574893 -109713769 + L1PA7 LINE L1 4257 5124 -1022 834 157 193 0 chr4 74574893 74575059 -109713603 - MSTA LTR MaLR -230 198 1 667 252 128 62 chr4 74575105 74575308 -109713354 + MLT1G1 LTR MaLR 2 231 -364 923 217 11 0 chr4 74575308 74575483 -109713179 + MER45A DNA AcHobo 2 178 0 667 252 128 62 chr4 74575483 74575569 -109713093 + MLT1G1 LTR MaLR 231 310 -285 282 358 36 15 chr4 74575603 74575740 -109712922 - L2 LINE L2 -269 3044 2905 1110 140 6 0 chr4 74576266 74576437 -109712225 + MSTD LTR MaLR 2 173 -223 18537 200 17 11 chr4 74576539 74579639 -109709023 - L1P4 LINE L1 -655 6157 3077 312 27 0 0 chr4 74579639 74579676 -109708986 + (TC)n Simple_repeat Simple_repeat 2 38 0 243 0 0 0 chr4 74579675 74579702 -109708960 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 18537 200 17 11 chr4 74579676 74580853 -109707809 - L1P4 LINE L1 -3735 3077 1846 2525 99 14 16 chr4 74580853 74581218 -109707444 + THE1B LTR MaLR 1 364 0 18537 200 17 11 chr4 74581218 74582021 -109706641 - L1P4 LINE L1 -4966 1846 1049 3659 201 57 18 chr4 74582023 74582955 -109705707 - L1 LINE L1 -865 5281 4314 1976 214 11 21 chr4 74582951 74583422 -109705240 - L1 LINE L1 -2299 3847 3382 * 1020 235 24 10 chr4 74583450 74583907 -109704755 + L1M4c LINE L1 2153 2799 -3583 481 115 13 0 chr4 74584148 74584226 -109704436 + MSTC LTR MaLR 343 421 -7 31 0 0 0 chr4 74585037 74585068 -109703594 + AT_rich Low_complexity Low_complexity 1 31 0 400 286 125 30 chr4 74585540 74585708 -109702954 - MIR3 SINE MIR -5 203 20 339 315 72 9 chr4 74586127 74586238 -109702424 + L2 LINE L2 3192 3309 -4 189 0 0 0 chr4 74588457 74588478 -109700184 + (A)n Simple_repeat Simple_repeat 1 21 0 2156 162 24 22 chr4 74589023 74589436 -109699226 - MLT2D LTR ERVL 0 414 1 26 30 0 0 chr4 74589797 74589830 -109698832 + AT_rich Low_complexity Low_complexity 1 33 0 787 317 71 31 chr4 74591153 74591706 -109696956 - L2 LINE L2 -31 3282 2711 216 0 0 0 chr4 74591796 74591820 -109696842 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2236 126 24 21 chr4 74592372 74592744 -109695918 - THE1C LTR MaLR -2 373 1 7027 29 9 1 chr4 74592990 74593840 -109694822 + L1PA5 LINE L1 5298 6154 0 286 308 94 0 chr4 74594586 74594703 -109693959 - MIR SINE MIR -76 186 59 347 221 144 0 chr4 74595477 74595581 -109693081 - L2 LINE L2 -2 3311 3193 23 33 0 0 chr4 74599596 74599626 -109689036 + AT_rich Low_complexity Low_complexity 1 30 0 2422 24 0 10 chr4 74600285 74600575 -109688087 + AluY SINE Alu 23 309 -2 2438 65 0 0 chr4 74600851 74601160 -109687502 + AluY SINE Alu 1 309 -2 1370 60 0 4 chr4 74601498 74601714 -109686948 + AluY SINE Alu 1 301 -10 402 234 152 82 chr4 74602089 74602333 -109686329 + LTR16C LTR ERVL 231 491 0 206 130 0 37 chr4 74602566 74602620 -109686042 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 21 0 0 0 chr4 74603006 74603027 -109685635 + AT_rich Low_complexity Low_complexity 1 21 0 264 333 99 0 chr4 74603090 74603201 -109685461 - L2 LINE L2 0 3272 3151 692 208 53 0 chr4 74603201 74603218 -109685444 - L1P LINE L1 -1512 4634 4619 6379 84 1 4 chr4 74603218 74604787 -109683875 - L1PA14 LINE L1 -3 6158 4600 * 10068 28 7 1 chr4 74604784 74606758 -109681904 - L1PA4 LINE L1 -2 6153 4168 692 208 53 0 chr4 74604787 74606890 -109681772 - L1P LINE L1 -1527 4619 4479 253 271 82 24 chr4 74607173 74607258 -109681404 - MLT1J LTR MaLR 0 511 422 650 273 77 36 chr4 74607280 74607500 -109681162 - MIR SINE MIR -13 249 21 35 63 0 0 chr4 74607915 74607978 -109680684 + AT_rich Low_complexity Low_complexity 1 63 0 2824 69 5 11 chr4 74608190 74608567 -109680095 + THE1C LTR MaLR 1 375 0 250 343 164 8 chr4 74608813 74608947 -109679715 - MIR3 SINE MIR -34 174 20 1642 190 45 132 chr4 74608967 74609504 -109679158 + MLT1D LTR MaLR 1 490 -15 469 228 123 18 chr4 74609724 74609895 -109678767 + MLT1H LTR MaLR 25 213 -336 353 277 0 45 chr4 74610163 74610275 -109678387 - L2 LINE L2 -194 3078 2972 846 239 88 10 chr4 74612440 74612645 -109676017 + MIR SINE MIR 21 241 -21 252 314 95 118 chr4 74612658 74613015 -109675647 - L2 LINE L2 -52 3220 2872 21 36 0 0 chr4 74613031 74613059 -109675603 + AT_rich Low_complexity Low_complexity 1 28 0 213 167 24 0 chr4 74613289 74613331 -109675331 + (TA)n Simple_repeat Simple_repeat 1 43 0 532 288 122 11 chr4 74613476 74613754 -109674908 - L1ME LINE L1 -328 5793 5485 23 54 0 0 chr4 74614102 74614139 -109674523 + AT_rich Low_complexity Low_complexity 1 37 0 1023 90 45 0 chr4 74614255 74614411 -109674251 - L1MA6 LINE L1 0 6300 6138 805 167 0 0 chr4 74614417 74614549 -109674113 - L1MA6 LINE L1 -290 6010 5879 804 107 0 16 chr4 74614554 74614676 -109673986 + L1MA6 LINE L1 5757 5876 -424 303 28 0 0 chr4 74614867 74614903 -109673759 + (CA)n Simple_repeat Simple_repeat 2 37 0 324 161 0 0 chr4 74614915 74614996 -109673666 + (TA)n Simple_repeat Simple_repeat 2 82 0 229 278 14 28 chr4 74615448 74615520 -109673142 + MARNA DNA Mariner 152 222 -364 246 292 0 0 chr4 74615570 74615635 -109673027 + MARNA DNA Mariner 344 408 -178 1093 307 61 13 chr4 74616154 74616763 -109671899 + L1ME4a LINE L1 5278 5915 -206 324 132 0 19 chr4 74616776 74616829 -109671833 + MLT1B LTR MaLR 4 55 -335 381 102 0 0 chr4 74616847 74616906 -109671756 + (TCCC)n Simple_repeat Simple_repeat 4 62 0 6185 161 36 44 chr4 74616919 74617280 -109671382 - L1PB3 LINE L1 -3 6151 5789 297 0 0 0 chr4 74617280 74617313 -109671349 + (CA)n Simple_repeat Simple_repeat 2 34 0 6185 161 36 44 chr4 74617313 74618694 -109669968 - L1PB3 LINE L1 -365 5789 4425 4633 71 3 0 chr4 74618694 74619283 -109669379 + LTR10C LTR ERV1 1 591 0 6185 161 36 44 chr4 74619283 74619617 -109669045 - L1PB3 LINE L1 -1729 4425 4090 1058 218 47 97 chr4 74619667 74620007 -109668655 + MLT1B LTR MaLR 68 390 0 295 183 113 49 chr4 74620038 74620180 -109668482 + L1ME4a LINE L1 5971 6121 0 378 341 22 20 chr4 74620495 74620692 -109667970 + MIR SINE MIR 5 199 -63 22 0 0 0 chr4 74621023 74621045 -109667617 + AT_rich Low_complexity Low_complexity 1 22 0 2573 209 58 35 chr4 74621296 74622041 -109666621 + L1 LINE L1 2603 3364 -2782 563 288 171 5 chr4 74622423 74622645 -109666017 + MIR SINE MIR 2 260 -2 259 307 94 55 chr4 74622868 74622995 -109665667 + L2 LINE L2 3182 3313 0 733 173 19 13 chr4 74623031 74623187 -109665475 - L1MD1 LINE L1 -1 6241 6085 7642 232 14 40 chr4 74623506 74626350 -109662312 - L1PA13 LINE L1 -1170 5627 2712 6114 93 13 14 chr4 74626350 74627656 -109661006 + L1PA10 LINE L1 4834 6165 -3 2254 82 0 55 chr4 74627666 74627995 -109660667 + AluY SINE Alu 1 311 0 7642 232 14 40 chr4 74627995 74628466 -109660196 - L1PA13 LINE L1 -4094 2703 2374 724 65 9 19 chr4 74628472 74628579 -109660083 - L1PB1 LINE L1 -1 6150 6045 462 70 0 0 chr4 74628583 74628640 -109660022 + L1P LINE L1 5038 5094 -1052 * 1568 209 15 0 chr4 74628634 74628964 -109659698 - L1 LINE L1 -3645 2501 2167 * 2740 150 57 15 chr4 74628961 74629623 -109659039 - L1PBa LINE L1 -5749 1114 1 3177 255 36 19 chr4 74629624 74630661 -109658001 - L1PA13 LINE L1 -4404 2393 1327 330 289 35 42 chr4 74630986 74631128 -109657534 - L1PA13 LINE L1 -6170 617 477 428 262 0 145 chr4 74631149 74631370 -109657292 - L1PA13 LINE L1 -6563 224 36 1268 222 60 12 chr4 74631396 74631730 -109656932 - L1MC3 LINE L1 -1029 6756 6407 2046 179 8 3 chr4 74631730 74632088 -109656574 - Tigger1 DNA MER2_type 0 2418 2059 800 176 30 30 chr4 74632098 74632263 -109656399 + AluJo SINE Alu 15 179 -133 13072 139 12 6 chr4 74632290 74634352 -109654310 - Tigger1 DNA MER2_type -341 2077 3 3502 197 55 13 chr4 74634353 74635119 -109653543 - L1MC3 LINE L1 -1376 6409 5612 1417 182 38 0 chr4 74635119 74635355 -109653307 - AluJb SINE Alu -67 245 1 601 290 152 5 chr4 74635434 74635651 -109653011 + MIR SINE MIR 5 253 -9 656 285 45 11 chr4 74635935 74636114 -109652548 - MER91A DNA MER1_type -11 185 1 28 29 0 0 chr4 74637013 74637048 -109651614 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr4 74637177 74637198 -109651464 + (T)n Simple_repeat Simple_repeat 1 21 0 339 371 38 15 chr4 74638266 74638398 -109650264 - L2 LINE L2 0 3272 3138 258 365 5 80 chr4 74639088 74639288 -109649374 - L2 LINE L2 -172 3100 2916 234 339 124 58 chr4 74639315 74639557 -109649105 + L2 LINE L2 2995 3252 -20 21 0 0 0 chr4 74639851 74639872 -109648790 + AT_rich Low_complexity Low_complexity 1 21 0 336 309 88 46 chr4 74640190 74640452 -109648210 + L1MEc LINE L1 2104 2376 -4020 1399 282 78 22 chr4 74640563 74641064 -109647598 - MLT1E LTR MaLR -3 590 52 240 280 148 19 chr4 74641150 74641414 -109647248 - L1ME3A LINE L1 -219 5951 5654 517 337 106 39 chr4 74641420 74641998 -109646664 + L2 LINE L2 2662 3277 -36 277 243 153 36 chr4 74643144 74643255 -109645407 + MER5B DNA MER1_type 52 175 -3 382 349 175 11 chr4 74643259 74643795 -109644867 + L2 LINE L2 2164 2787 -527 322 332 95 84 chr4 74643890 74644270 -109644392 + L2 LINE L2 2887 3270 -2 2372 39 45 0 chr4 74644367 74644653 -109644009 - AluY SINE Alu -12 299 1 213 139 0 0 chr4 74645679 74645722 -109642940 + (TA)n Simple_repeat Simple_repeat 1 43 0 1480 210 56 17 chr4 74645726 74646083 -109642579 - MLT2D LTR ERVL -40 374 4 241 325 120 26 chr4 74646094 74646211 -109642451 - MIR3 SINE MIR -73 135 8 248 158 35 0 chr4 74646385 74646442 -109642220 - L1MB7 LINE L1 0 6184 6126 2507 109 3 0 chr4 74646460 74646826 -109641836 - L1PB1 LINE L1 -2 6149 5783 252 143 0 0 chr4 74646832 74646874 -109641788 + (TA)n Simple_repeat Simple_repeat 2 43 0 284 289 0 0 chr4 74646874 74646964 -109641698 - L1MC4 LINE L1 -1339 6703 6614 5600 194 42 3 chr4 74646985 74647250 -109641412 + L1P5 LINE L1 3952 4205 -1946 2365 73 3 3 chr4 74647250 74647552 -109641110 - AluY SINE Alu -9 302 1 5600 194 42 3 chr4 74647552 74648050 -109640612 + L1P5 LINE L1 4205 4682 -1469 216 0 0 0 chr4 74648050 74648074 -109640588 + (TA)n Simple_repeat Simple_repeat 2 25 0 5600 194 42 3 chr4 74648074 74648847 -109639815 + L1P5 LINE L1 4682 5554 -597 3510 187 51 37 chr4 74648848 74648960 -109639702 - L1MB7 LINE L1 -48 6136 6027 434 89 51 38 chr4 74648960 74649039 -109639623 - MADE1 DNA Mariner 0 80 1 3510 187 51 37 chr4 74649039 74649341 -109639321 - L1MB7 LINE L1 -157 6027 5731 2457 89 0 0 chr4 74649341 74649644 -109639018 - AluSq SINE Alu -10 303 1 3510 187 51 37 chr4 74649644 74650203 -109638459 - L1MB7 LINE L1 -453 5731 5152 623 130 0 0 chr4 74650353 74650445 -109638217 - AluSg/x SINE Alu -39 271 180 2368 221 15 15 chr4 74650451 74650829 -109637833 - L1MB7 LINE L1 -1271 4875 4495 2231 86 0 26 chr4 74650829 74651131 -109637531 - AluSg SINE Alu -16 294 1 2368 221 15 15 chr4 74651131 74651349 -109637313 - L1MB7 LINE L1 -1650 4496 4279 363 264 114 85 chr4 74652050 74652251 -109636411 - MIR SINE MIR -50 212 6 219 324 81 0 chr4 74652267 74652341 -109636321 + MER91C DNA MER1_type 31 110 -30 268 266 50 72 chr4 74652372 74652511 -109636151 + MIR SINE MIR 77 212 -50 24 0 0 0 chr4 74652568 74652592 -109636070 + AT_rich Low_complexity Low_complexity 1 24 0 674 201 160 46 chr4 74655510 74655704 -109632958 - AluJo SINE Alu -22 290 75 2315 120 38 10 chr4 74705704 74706104 -109582558 + L1MA4A LINE L1 5891 6301 -2 2389 98 3 0 chr4 74706153 74706460 -109582202 - AluSp SINE Alu -5 308 1 475 271 65 0 chr4 74706566 74706736 -109581926 + L1M4 LINE L1 2373 2553 -3593 1434 103 0 0 chr4 74706737 74706940 -109581722 - AluSc SINE Alu 0 309 107 1499 211 135 54 chr4 74707074 74707666 -109580996 - MER50 LTR ERV1 -85 649 10 4139 87 15 3 chr4 74707981 74708567 -109580095 + SVA Other Other 2 594 -792 414 0 0 0 chr4 74708798 74708844 -109579818 + (TA)n Simple_repeat Simple_repeat 1 46 0 514 118 13 0 chr4 74709056 74709132 -109579530 - FRAM SINE Alu -27 149 73 732 204 58 0 chr4 74709815 74709987 -109578675 - MER114 LTR ERV -464 184 3 385 239 67 48 chr4 74710743 74710846 -109577816 - L1MEc LINE L1 -4050 2346 2246 2225 174 63 9 chr4 74710846 74711307 -109577355 - MER66B LTR ERV1 0 486 1 385 239 67 48 chr4 74711307 74711471 -109577191 - L1MEc LINE L1 -4150 2246 2074 474 221 77 82 chr4 74711617 74711825 -109576837 - L1MC5 LINE L1 -604 7357 7151 258 56 0 0 chr4 74711835 74711871 -109576791 + (TA)n Simple_repeat Simple_repeat 2 37 0 1698 156 48 4 chr4 74711871 74712140 -109576522 - AluSg SINE Alu -29 281 1 599 174 49 49 chr4 74712142 74712326 -109576336 - Charlie5 DNA MER1_type -72 2540 2357 435 306 128 43 chr4 74713682 74713917 -109574745 - MIR SINE MIR -6 256 2 2114 67 0 22 chr4 74714485 74714816 -109573846 - AluY SINE Alu 0 346 22 1997 141 3 0 chr4 74714823 74715122 -109573540 - AluSx SINE Alu -12 300 1 324 183 14 0 chr4 74715123 74715194 -109573468 + L1M4 LINE L1 2850 2921 -3225 31 0 0 0 chr4 74716053 74716084 -109572578 + AT_rich Low_complexity Low_complexity 1 31 0 186 167 0 0 chr4 74716253 74716289 -109572373 + (CATATA)n Simple_repeat Simple_repeat 1 36 0 197 246 62 31 chr4 74716673 74716738 -109571924 + MER5C DNA MER1_type 2 68 -256 26 74 0 0 chr4 74717276 74717330 -109571332 + AT_rich Low_complexity Low_complexity 1 54 0 338 198 22 0 chr4 74719875 74719966 -109568696 + (CATA)n Simple_repeat Simple_repeat 2 94 0 2042 72 11 4 chr4 74723168 74723431 -109565231 - AluY SINE Alu -11 300 36 377 193 40 127 chr4 74723746 74723896 -109564766 + MIR SINE MIR 82 218 -44 1283 255 109 9 chr4 74724185 74724605 -109564057 + LTR40b LTR ERVL 1 462 0 249 318 53 53 chr4 74726278 74726429 -109562233 - MIR SINE MIR -53 209 59 1973 152 0 62 chr4 74726723 74727091 -109561571 - MER7A DNA MER2_type -2 344 2 928 292 40 47 chr4 74727143 74727646 -109561016 - L2 LINE L2 -19 3294 2708 506 253 139 4 chr4 74727756 74727993 -109560669 - LTR50 LTR ERVL -56 739 471 427 273 160 25 chr4 74728058 74728296 -109560366 - LTR50 LTR ERVL -510 285 16 255 258 56 0 chr4 74728322 74728411 -109560251 + MLT1H1 LTR MaLR 163 256 -339 503 250 132 24 chr4 74729178 74729312 -109559350 + MLT1H1 LTR MaLR 299 417 -132 2619 101 0 3 chr4 74729312 74729668 -109558994 - THE1A LTR MaLR 0 355 1 503 250 132 24 chr4 74729668 74729759 -109558903 + MLT1H1 LTR MaLR 417 541 -8 640 304 25 15 chr4 74730090 74730291 -109558371 - MIR SINE MIR -56 206 4 296 279 0 0 chr4 74730817 74730885 -109557777 + (TGGA)n Simple_repeat Simple_repeat 3 70 0 2030 164 0 0 chr4 74730974 74731284 -109557378 + AluSx SINE Alu 1 310 -2 669 208 119 0 chr4 74731647 74731806 -109556856 - MER45A DNA AcHobo 0 178 1 387 60 0 0 chr4 74731902 74731952 -109556710 + (CAAAA)n Simple_repeat Simple_repeat 3 52 0 2794 233 33 30 chr4 74732046 74733026 -109555636 - L1ME3A LINE L1 -11 6159 5176 22 56 0 0 chr4 74733040 74733076 -109555586 + AT_rich Low_complexity Low_complexity 1 36 0 218 204 0 20 chr4 74733726 74733775 -109554887 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 1552 132 24 36 chr4 74733930 74734073 -109554589 - L1M1 LINE L1 -700 5603 5460 2385 158 14 39 chr4 74734073 74734510 -109554152 + MSTB LTR MaLR 1 426 0 1552 132 24 36 chr4 74734510 74734700 -109553962 - L1M1 LINE L1 -843 5460 5274 1266 195 28 3 chr4 74734696 74734983 -109553679 - L1M1 LINE L1 -2090 4056 3763 * 436 168 16 0 chr4 74734983 74735108 -109553554 + CT-rich Low_complexity Low_complexity 2 128 0 726 150 0 0 chr4 74735125 74735278 -109553384 + CT-rich Low_complexity Low_complexity 2 154 0 549 187 0 0 chr4 74735298 74735437 -109553225 + CT-rich Low_complexity Low_complexity 2 140 0 279 182 0 0 chr4 74735489 74735566 -109553096 + CT-rich Low_complexity Low_complexity 2 78 0 801 150 0 0 chr4 74735567 74735747 -109552915 + (TC)n Simple_repeat Simple_repeat 1 180 0 1662 180 85 91 chr4 74735967 74736008 -109552654 - L1M1 LINE L1 -2372 3774 3734 2316 100 3 7 chr4 74736008 74736318 -109552344 - AluSp SINE Alu -4 309 1 1662 180 85 91 chr4 74736318 74736815 -109551847 - L1M1 LINE L1 -2412 3734 3239 1772 225 5 60 chr4 74736857 74737093 -109551569 - L1M1 LINE L1 -3330 2816 2568 326 113 12 100 chr4 74737093 74737173 -109551489 - L1PA16 LINE L1 -9 6157 6085 1772 225 5 60 chr4 74737173 74737532 -109551130 - L1M1 LINE L1 -3578 2568 2254 800 212 48 79 chr4 74737533 74737825 -109550837 + L1M1 LINE L1 15 297 -7268 * 1320 90 36 9 chr4 74737823 74738046 -109550616 + L1M1 LINE L1 3432 3660 -3905 * 8391 179 38 31 chr4 74738038 74738478 -109550184 + L1M1 LINE L1 4016 4452 -3113 2233 95 0 0 chr4 74738478 74738811 -109549851 + AluY SINE Alu 1 333 0 8391 179 38 31 chr4 74738811 74739878 -109548784 + L1M1 LINE L1 4452 5511 -2054 2385 123 34 14 chr4 74739878 74740235 -109548427 - THE1B LTR MaLR 0 364 1 11172 102 17 1 chr4 74740235 74741789 -109546873 - THE1B-int LTR MaLR 0 1580 1 2324 126 36 14 chr4 74741789 74742145 -109546517 - THE1B LTR MaLR 0 364 1 8391 179 38 31 chr4 74742145 74742892 -109545770 + L1M1 LINE L1 5510 6288 -1277 6461 95 30 14 chr4 74743021 74744088 -109544574 + SVA Other Other 432 1386 0 22 0 0 0 chr4 74744423 74744445 -109544217 + AT_rich Low_complexity Low_complexity 1 22 0 9060 212 65 36 chr4 74745244 74747530 -109541132 + L1PA13 LINE L1 1 2366 -4431 1562 251 100 22 chr4 74747539 74748120 -109540542 + L1PA15 LINE L1 7 632 -6949 1444 212 23 0 chr4 74748130 74748479 -109540183 + L1PA15 LINE L1 6386 6742 -842 4794 117 4 10 chr4 74748590 74749366 -109539296 + L1PA15 LINE L1 6833 7603 0 21 0 0 0 chr4 74749386 74749407 -109539255 + AT_rich Low_complexity Low_complexity 1 21 0 2597 137 33 7 chr4 74749592 74750051 -109538611 + L1PB4 LINE L1 5673 6143 -13 2186 296 147 15 chr4 74750063 74751533 -109537129 - L2 LINE L2 -3 3310 1651 192 125 0 0 chr4 74752357 74752389 -109536273 + (T)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr4 74752391 74752412 -109536250 + AT_rich Low_complexity Low_complexity 1 21 0 431 49 0 0 chr4 74752413 74752474 -109536188 - L1PA4 LINE L1 -1 6154 6094 345 207 157 25 chr4 74752528 74752649 -109536013 - MIR SINE MIR -10 252 116 793 246 48 0 chr4 74752652 74752900 -109535762 + L1ME3A LINE L1 5754 6013 -157 7557 191 60 25 chr4 74753160 74754849 -109533813 + MER52A LTR ERV1 1 1748 -7 202 244 0 0 chr4 74755748 74755789 -109532873 + L3b LINE CR1 1279 1319 -264 6248 128 16 33 chr4 74756323 74758162 -109530500 + L1MA2 LINE L1 4484 6302 -2 10357 194 17 58 chr4 74758212 74758254 -109530408 - L1M1 LINE L1 -3890 2958 2916 1817 147 29 0 chr4 74758254 74758560 -109530102 - AluY SINE Alu 0 314 1 10357 194 17 58 chr4 74758560 74759661 -109529001 - L1M1 LINE L1 -3932 2916 1770 2322 146 3 3 chr4 74759661 74760025 -109528637 + THE1B LTR MaLR 1 364 0 10357 194 17 58 chr4 74760025 74760091 -109528571 - L1M1 LINE L1 -5078 1770 1703 2317 93 6 10 chr4 74760091 74760402 -109528260 - AluY SINE Alu -1 310 1 10357 194 17 58 chr4 74760402 74761819 -109526843 - L1M1 LINE L1 -5145 1703 442 488 290 128 59 chr4 74762093 74762277 -109526385 + L1ME3A LINE L1 5494 5664 -506 1857 242 55 52 chr4 74762277 74762929 -109525733 + MLT1E1 LTR MaLR 1 654 0 488 290 128 59 chr4 74762929 74763151 -109525511 + L1ME3A LINE L1 5664 5928 -242 2550 42 3 10 chr4 74764182 74764490 -109524172 - AluY SINE Alu -5 306 1 202 167 100 33 chr4 74764874 74764934 -109523728 - L2 LINE L2 -104 3209 3146 228 238 48 0 chr4 74764953 74765037 -109523625 + L1MC4 LINE L1 6615 6702 -1340 219 186 0 0 chr4 74765038 74765081 -109523581 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 231 225 150 0 chr4 74765081 74765161 -109523501 - L2 LINE L2 -311 3002 2911 675 204 0 0 chr4 74766298 74766450 -109522212 + L1MA6 LINE L1 6149 6300 0 289 291 0 13 chr4 74766614 74766693 -109521969 + CT-rich Low_complexity Low_complexity 2 79 0 458 287 100 45 chr4 74767326 74767636 -109521026 - L2 LINE L2 -84 3229 2903 238 119 24 0 chr4 74767868 74767910 -109520752 - MER116 DNA Mariner 0 80 38 3613 250 77 45 chr4 74768237 74769752 -109518910 + L1MA4A LINE L1 1 1563 -5646 3122 163 37 30 chr4 74769771 74770600 -109518062 + L1MA4A LINE L1 2533 3369 -3839 2370 215 22 0 chr4 74770607 74771156 -109517506 + L1MA4A LINE L1 3532 4092 -3116 * 5238 171 14 52 chr4 74771153 74771513 -109517149 + L1MA4A LINE L1 5320 5692 -1673 2081 139 3 0 chr4 74771513 74771823 -109516839 + AluSx SINE Alu 1 311 -1 5238 171 14 52 chr4 74771823 74773605 -109515057 + L1MA4A LINE L1 5692 7365 0 30 45 0 0 chr4 74775931 74775975 -109512687 + AT_rich Low_complexity Low_complexity 1 44 0 496 231 179 35 chr4 74776423 74776652 -109512010 - L1ME4a LINE L1 -165 5956 5695 769 188 0 0 chr4 74777787 74777915 -109510747 + FLAM_A SINE Alu 1 128 -5 225 286 14 0 chr4 74777952 74778022 -109510640 + MIR SINE MIR 184 254 -8 250 164 33 33 chr4 74778123 74778184 -109510478 + (CATA)n Simple_repeat Simple_repeat 2 62 0 449 295 72 81 chr4 74778192 74778607 -109510055 + HAL1b LINE L1 18 310 -1038 891 187 110 5 chr4 74778607 74778826 -109509836 - MLT1C LTR MaLR -225 242 1 596 177 27 81 chr4 74778826 74778973 -109509689 + MER92A LTR ERV1 301 397 -15 24 96 0 0 chr4 74779386 74779459 -109509203 + AT_rich Low_complexity Low_complexity 1 73 0 21 0 0 0 chr4 74779539 74779560 -109509102 + AT_rich Low_complexity Low_complexity 1 21 0 297 328 41 8 chr4 74779979 74780101 -109508561 + MIR SINE MIR 119 244 -18 30 45 0 0 chr4 74780397 74780441 -109508221 + AT_rich Low_complexity Low_complexity 1 44 0 204 97 0 0 chr4 74780680 74780711 -109507951 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 254 378 107 34 chr4 74780816 74781226 -109507436 - L2 LINE L2 -407 2907 2468 309 250 0 0 chr4 74781900 74781964 -109506698 + MLT1J LTR MaLR 110 173 -338 184 336 102 31 chr4 74782321 74782449 -109506213 - L2 LINE L2 -10 3303 3167 587 253 129 18 chr4 74783170 74783395 -109505267 + L2 LINE L2 1248 1497 -1817 476 248 0 0 chr4 74783398 74783499 -109505163 - AluJ/FLAM SINE Alu -211 101 1 225 267 17 0 chr4 74783517 74783577 -109505085 + L2 LINE L2 1506 1566 -1748 582 199 21 43 chr4 74783583 74783724 -109504938 + MER5C DNA MER1_type 12 149 -175 3401 288 72 27 chr4 74783749 74785206 -109503456 + L2 LINE L2 1588 3110 -203 466 138 12 12 chr4 74785245 74785325 -109503337 - FLAM SINE Alu -18 125 46 308 298 146 28 chr4 74786609 74786787 -109501875 + L3b LINE CR1 1203 1401 -182 323 202 36 0 chr4 74787569 74787653 -109501009 + L1MC4 LINE L1 7955 8041 -1 7876 11 0 1 chr4 74788159 74789739 -109498923 - L1PA2 LINE L1 -4 6151 4573 9893 25 0 0 chr4 74789739 74790902 -109497760 + L1PA2 LINE L1 3396 4558 -1588 366 239 22 0 chr4 74791436 74791570 -109497092 + (TA)n Simple_repeat Simple_repeat 2 138 0 317 245 218 20 chr4 74792223 74792370 -109496292 - MLT1H1 LTR MaLR -49 518 306 560 281 46 28 chr4 74792424 74792683 -109495979 - MLT1H1 LTR MaLR -297 258 32 693 254 117 19 chr4 74793996 74794201 -109494461 + MIR SINE MIR 38 262 0 256 330 40 0 chr4 74794205 74794305 -109494357 - L2 LINE L2 -21 3292 3189 4806 243 12 6 chr4 74795831 74796918 -109491744 + HERVI LTR ERV1 6675 7767 -18 1643 181 170 29 chr4 74796938 74797385 -109491277 + LTR10A LTR ERV1 1 510 -99 183 399 27 33 chr4 74797925 74798108 -109490554 + L2 LINE L2 2923 3104 -168 194 128 26 0 chr4 74798108 74798147 -109490515 + (CATAT)n Simple_repeat Simple_repeat 3 42 0 1163 207 117 52 chr4 74798255 74798598 -109490064 - MLT1A1 LTR MaLR 0 365 1 763 256 88 0 chr4 74798665 74798880 -109489782 - MIR SINE MIR -25 237 4 320 262 34 40 chr4 74798880 74799021 -109489641 - L2 LINE L2 -48 3265 3126 431 278 179 22 chr4 74800472 74800695 -109487967 - MIR SINE MIR -3 259 2 642 305 124 8 chr4 74800898 74801157 -109487505 - L2 LINE L2 0 3313 3025 206 254 60 30 chr4 74801176 74801205 -109487457 + L2 LINE L2 3245 3272 -41 1168 58 121 17 chr4 74801205 74801379 -109487283 + MER107 DNA MER1_type 4 195 -2 206 254 60 30 chr4 74801379 74801416 -109487246 + L2 LINE L2 3272 3313 0 495 309 39 40 chr4 74801504 74801748 -109486914 - L2 LINE L2 -298 3015 2774 25 0 0 0 chr4 74802068 74802093 -109486569 + AT_rich Low_complexity Low_complexity 1 25 0 180 0 0 0 chr4 74802182 74802202 -109486460 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 2857 12 0 6 chr4 74802792 74803112 -109485550 + AluYb8 SINE Alu 1 318 0 258 81 0 0 chr4 74805882 74805919 -109482743 + (GA)n Simple_repeat Simple_repeat 1 37 0 29 0 0 0 chr4 74806914 74806943 -109481719 + AT_rich Low_complexity Low_complexity 1 29 0 654 232 269 7 chr4 74807007 74807412 -109481250 - L1ME4a LINE L1 -82 6039 5529 584 266 43 74 chr4 74807642 74807898 -109480764 - MIR SINE MIR -3 259 12 1742 168 3 13 chr4 74809384 74809688 -109478974 + AluJo SINE Alu 1 301 -11 1748 123 19 0 chr4 74809691 74809951 -109478711 + AluSp SINE Alu 45 309 -4 625 281 98 13 chr4 74811604 74811839 -109476823 - MIR SINE MIR -1 261 7 1744 186 89 19 chr4 74811980 74812350 -109476312 + MSTD LTR MaLR 1 396 0 205 192 19 19 chr4 74813147 74813199 -109475463 + L2 LINE L2 3262 3313 0 23 0 0 0 chr4 74814224 74814247 -109474415 + AT_rich Low_complexity Low_complexity 1 23 0 656 269 107 8 chr4 74814505 74814739 -109473923 - MIR SINE MIR -3 259 3 232 324 14 0 chr4 74814751 74814825 -109473837 + L2 LINE L2 3226 3300 -13 6866 203 48 44 chr4 74815540 74817233 -109471429 + MER52A LTR ERV1 55 1755 0 277 374 19 0 chr4 74817527 74817634 -109471028 - MIR3 SINE MIR -2 206 98 231 355 83 47 chr4 74818864 74819033 -109469629 - L2 LINE L2 -12 3260 3086 503 347 70 4 chr4 74819336 74819578 -109469084 + MIR SINE MIR 5 262 0 186 222 33 0 chr4 74820929 74821019 -109467643 + (TA)n Simple_repeat Simple_repeat 2 94 0 375 289 118 46 chr4 74821050 74821330 -109467332 + MLT1J LTR MaLR 175 474 -37 2147 162 16 10 chr4 74822896 74823284 -109465378 - MLT1B LTR MaLR 0 390 1 2556 68 0 0 chr4 74826377 74826688 -109461974 - AluY SINE Alu 0 311 1 711 317 67 27 chr4 74828085 74828536 -109460126 + Tigger8 DNA MER2_type 25 493 -173 959 254 50 14 chr4 74828548 74828827 -109459835 + Charlie2 DNA MER1_type 49 337 -2445 2266 99 20 7 chr4 74829042 74829346 -109459316 + AluSx SINE Alu 1 308 -4 640 181 0 9 chr4 74829346 74829462 -109459200 - FLAM_A SINE Alu -18 115 1 276 301 173 43 chr4 74829941 74830111 -109458551 - MIR SINE MIR -63 145 9 21 0 0 0 chr4 74830832 74830853 -109457809 + AT_rich Low_complexity Low_complexity 1 21 0 290 115 279 0 chr4 74830860 74830921 -109457741 - L1MC2 LINE L1 -25 6319 6242 378 258 159 18 chr4 74831067 74831230 -109457432 - MER5A DNA MER1_type 0 189 4 207 0 0 0 chr4 74831314 74831337 -109457325 + (A)n Simple_repeat Simple_repeat 1 23 0 429 248 150 13 chr4 74831647 74831800 -109456862 + MER5A DNA MER1_type 10 183 -6 573 229 49 0 chr4 74833468 74833612 -109455050 + MIR SINE MIR 100 250 -12 193 147 0 0 chr4 74834991 74835025 -109453637 - L2 LINE L2 0 3272 3239 1732 143 7 37 chr4 74835465 74835759 -109452903 - AluJo SINE Alu -23 289 5 321 264 0 11 chr4 74836908 74836995 -109451667 - MIR SINE MIR -2 260 175 572 241 134 21 chr4 74836998 74837185 -109451477 + MIR SINE MIR 34 241 -21 394 216 21 21 chr4 74837813 74837910 -109450752 + MLT1J1 LTR MaLR 1 97 -349 464 275 50 107 chr4 74837954 74838037 -109450625 + MLT1J2 LTR MaLR 203 289 -161 1486 198 128 13 chr4 74838037 74838492 -109450170 + Charlie4a DNA MER1_type 2 508 0 464 275 50 107 chr4 74838492 74838670 -109449992 + MLT1J2 LTR MaLR 289 449 -1 2207 78 7 39 chr4 74839733 74839865 -109448797 + AluSg SINE Alu 1 136 -174 2359 75 0 3 chr4 74839865 74840172 -109448490 + AluY SINE Alu 1 306 -5 2207 78 7 39 chr4 74840172 74840346 -109448316 + AluSg SINE Alu 136 297 -13 1548 189 107 126 chr4 74840386 74841274 -109447388 - L1MC5 LINE L1 -54 7907 7037 1212 221 69 61 chr4 74842564 74843727 -109444935 - L1ME3A LINE L1 -57 6113 4855 931 171 0 0 chr4 74843771 74843911 -109444751 + FRAM SINE Alu 1 137 -39 1673 192 7 16 chr4 74846007 74846314 -109442348 + AluJb SINE Alu 1 304 -8 3409 148 25 14 chr4 74846884 74847375 -109441287 + MER50 LTR ERV1 7 506 -228 4877 110 0 13 chr4 74847375 74848075 -109440587 - LTR8 LTR ERV1 0 691 1 3409 148 25 14 chr4 74848075 74848144 -109440518 + MER50 LTR ERV1 506 573 -161 973 132 0 0 chr4 74848144 74848280 -109440382 - AluSg/x SINE Alu -6 306 171 760 203 7 0 chr4 74848280 74848423 -109440239 + MER50 LTR ERV1 568 711 -23 2116 125 7 0 chr4 74848981 74849276 -109439386 + AluSx SINE Alu 1 297 -15 2292 136 68 24 chr4 74849636 74849929 -109438733 + MER65A LTR ERV1 1 320 -125 2046 104 0 4 chr4 74849929 74850198 -109438464 + AluSp SINE Alu 37 304 -9 2292 136 68 24 chr4 74850198 74850330 -109438332 + MER65A LTR ERV1 320 445 0 200 359 0 0 chr4 74850521 74850585 -109438077 + L2 LINE L2 2995 3058 -214 1105 256 142 7 chr4 74851183 74851593 -109437069 + LTR33A LTR ERVL 59 523 0 22 35 0 0 chr4 74851619 74851648 -109437014 + AT_rich Low_complexity Low_complexity 1 29 0 2295 94 7 0 chr4 74852068 74852366 -109436296 + AluSg SINE Alu 1 300 -10 226 370 65 13 chr4 74852391 74852545 -109436117 + MIR SINE MIR 47 208 -54 214 294 0 0 chr4 74853323 74853374 -109435288 + MIR3 SINE MIR 147 197 -11 1505 199 36 42 chr4 74853966 74854322 -109434340 - MLT1A1 LTR MaLR 0 365 12 27 0 0 0 chr4 74854998 74855025 -109433637 + AT_rich Low_complexity Low_complexity 1 27 0 1585 187 8 0 chr4 74855044 74855306 -109433356 - AluJo SINE Alu -37 275 12 331 276 163 0 chr4 74856047 74856170 -109432492 + MER5B DNA MER1_type 3 145 -33 308 275 11 55 chr4 74856509 74856600 -109432062 + L2 LINE L2 3186 3272 0 4598 167 24 28 chr4 74858184 74859159 -109429503 - L1MB4 LINE L1 -1 6179 5194 248 298 92 28 chr4 74859879 74860020 -109428642 + MIR3 SINE MIR 48 197 -11 1000 203 215 21 chr4 74860026 74860356 -109428306 + MSTD LTR MaLR 1 394 -2 459 39 0 39 chr4 74861941 74862018 -109426644 + (GA)n Simple_repeat Simple_repeat 1 74 0 319 325 9 9 chr4 74863197 74863311 -109425351 + CT-rich Low_complexity Low_complexity 1 114 0 26 30 0 0 chr4 74863525 74863558 -109425104 + AT_rich Low_complexity Low_complexity 1 33 0 1975 219 89 61 chr4 74864075 74864793 -109423869 - L1ME1 LINE L1 -4 6231 5494 * 4292 247 81 39 chr4 74864781 74866827 -109421835 - L1ME1 LINE L1 -2251 3964 1850 181 98 49 0 chr4 74869244 74869285 -109419377 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 367 403 10 11 chr4 74870438 74870759 -109417903 - HERV16 LTR ERVL -1901 3095 2946 789 307 101 26 chr4 74870988 74871412 -109417250 - LTR16C LTR ERVL 0 491 36 228 211 0 0 chr4 74873486 74873538 -109415124 + L1ME3 LINE L1 6094 6145 -17 696 254 30 29 chr4 74873952 74875098 -109413564 - L1ME1 LINE L1 -5039 1176 36 294 220 0 0 chr4 74875492 74875592 -109413070 + G-rich Low_complexity Low_complexity 1 100 0 268 174 17 35 chr4 74875624 74875739 -109412923 + G-rich Low_complexity Low_complexity 5 117 0 1306 246 19 22 chr4 74875838 74876200 -109412462 + L1MD1 LINE L1 5865 6225 -17 201 318 91 0 chr4 74877847 74877913 -109410749 - L2 LINE L2 0 3272 3201 382 295 70 26 chr4 74879998 74880154 -109408508 + MIR3 SINE MIR 1 163 -45 331 275 17 17 chr4 74880210 74880330 -109408332 - MER103 DNA DNA -46 120 1 1945 122 17 0 chr4 74880629 74880924 -109407738 - AluSx SINE Alu -12 300 1 243 0 0 0 chr4 74881968 74881995 -109406667 + (TG)n Simple_repeat Simple_repeat 2 28 0 2559 211 110 31 chr4 74883026 74883365 -109405297 - L1 LINE L1 -1134 5012 4701 1790 153 3 11 chr4 74883365 74883652 -109405010 - AluSx SINE Alu -27 285 1 2559 211 110 31 chr4 74883652 74884156 -109404506 - L1 LINE L1 -1445 4701 4102 283 375 0 8 chr4 74885347 74885467 -109403195 + MIR3 SINE MIR 85 203 -5 211 167 0 0 chr4 74885461 74885497 -109403165 + MIR SINE MIR 109 144 -118 * 22 0 0 0 chr4 74887694 74887716 -109400946 + AT_rich Low_complexity Low_complexity 1 22 0 268 333 35 9 chr4 74887813 74887927 -109400735 - L2 LINE L2 -5 3308 3192 309 309 100 0 chr4 74889770 74889880 -109398782 + MIR3 SINE MIR 51 171 -37 265 294 141 0 chr4 74890605 74890697 -109397965 + L2 LINE L2 3193 3297 -16 1900 99 7 51 chr4 74891262 74891556 -109397106 + AluSg SINE Alu 1 281 -29 287 229 0 16 chr4 74892754 74892815 -109395847 - MER94 DNA DNA -3 131 72 700 203 34 7 chr4 74893379 74893527 -109395135 - MER3 DNA MER1_type -1 208 57 2583 207 62 25 chr4 74893533 74894633 -109394029 + L1PA15 LINE L1 2445 5902 -263 27 0 0 0 chr4 74894633 74894660 -109394002 + AT_rich Low_complexity Low_complexity 1 27 0 180 111 0 0 chr4 74895669 74895696 -109392966 + (TC)n Simple_repeat Simple_repeat 1 27 0 22 35 0 0 chr4 74895920 74895949 -109392713 + AT_rich Low_complexity Low_complexity 1 29 0 1927 124 10 3 chr4 74896112 74896402 -109392260 + AluSc SINE Alu 1 292 -17 273 57 0 0 chr4 74896402 74896437 -109392225 + (TA)n Simple_repeat Simple_repeat 1 35 0 1971 127 0 37 chr4 74897535 74897835 -109390827 - AluSx SINE Alu -22 290 2 356 260 24 49 chr4 74898284 74898407 -109390255 - MIR3 SINE MIR -2 206 87 488 261 83 32 chr4 74898712 74898869 -109389793 + MIR SINE MIR 98 262 0 38 39 0 0 chr4 74900660 74900712 -109387950 + AT_rich Low_complexity Low_complexity 1 52 0 202 393 76 0 chr4 74901053 74901198 -109387464 - MIR3 SINE MIR -10 198 43 192 77 0 0 chr4 74901392 74901418 -109387244 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 577 268 81 43 chr4 74901582 74901817 -109386845 + MIR SINE MIR 19 262 0 232 219 0 0 chr4 74902874 74902915 -109385747 + (CACG)n Simple_repeat Simple_repeat 1 41 0 247 232 171 12 chr4 74903375 74903457 -109385205 + MIR SINE MIR 58 152 -110 1641 169 97 32 chr4 74905005 74905377 -109383285 + MSTD LTR MaLR 1 396 0 230 324 176 20 chr4 74905661 74905763 -109382899 + L2 LINE L2 3192 3309 -4 1159 221 52 64 chr4 74905962 74907039 -109381623 + L1ME1 LINE L1 5127 6164 -2 24 0 0 0 chr4 74907140 74907164 -109381498 + AT_rich Low_complexity Low_complexity 1 24 0 1905 169 34 3 chr4 74907194 74907520 -109381142 + MER2 DNA MER2_type 10 345 0 181 373 98 0 chr4 74908042 74908144 -109380518 + L2 LINE L2 3191 3302 -11 21 0 0 0 chr4 74909131 74909152 -109379510 + AT_rich Low_complexity Low_complexity 1 21 0 270 372 109 19 chr4 74910404 74910560 -109378102 - L2 LINE L2 -2 3270 3101 286 321 66 19 chr4 74910971 74911077 -109377585 - L2 LINE L2 0 3313 3203 336 321 114 48 chr4 74911114 74911404 -109377258 - L2 LINE L2 -609 2705 2397 234 310 0 0 chr4 74912486 74912544 -109376118 - L2 LINE L2 -2 3311 3254 805 286 23 4 chr4 74912648 74912907 -109375755 - L1MC4 LINE L1 -541 7501 7238 1087 259 75 41 chr4 74912912 74913353 -109375309 - L1MC4a LINE L1 -809 6999 6544 263 220 25 25 chr4 74913355 74913473 -109375189 + GA-rich Low_complexity Low_complexity 2 119 0 5579 190 19 34 chr4 74915856 74918207 -109370455 + L1PA16 LINE L1 3829 6164 -2 225 162 0 0 chr4 74919642 74919679 -109368983 + MLT1H LTR MaLR 126 162 -387 * 333 258 118 0 chr4 74919646 74919739 -109368923 + MLT1I LTR MaLR 98 201 -208 2019 129 17 0 chr4 74919982 74920269 -109368393 + AluSx SINE Alu 1 292 -20 259 224 0 0 chr4 74920285 74920343 -109368319 + MLT1H1 LTR MaLR 482 539 -16 215 195 39 117 chr4 74920585 74920662 -109368000 + L2 LINE L2 3242 3312 -1 324 328 0 41 chr4 74922547 74922669 -109365993 + MER91B DNA MER1_type 67 183 -7 2570 151 24 7 chr4 74923793 74924216 -109364446 - MSTB1 LTR MaLR 0 432 3 226 242 0 191 chr4 74924409 74924566 -109364096 - L2 LINE L2 -40 3273 3147 1503 225 32 27 chr4 74924639 74925012 -109363650 + MLT1B LTR MaLR 1 375 -15 287 318 171 34 chr4 74925078 74925641 -109363021 - L2 LINE L2 -337 2977 2338 494 217 35 49 chr4 74926162 74926305 -109362357 - MIR SINE MIR -67 195 55 262 209 39 65 chr4 74927018 74927171 -109361491 + A-rich Low_complexity Low_complexity 1 149 0 660 191 16 0 chr4 74927863 74927989 -109360673 - MLT2B2 LTR ERVL -382 133 6 711 304 55 45 chr4 74927989 74928278 -109360384 + MLT1H LTR MaLR 63 354 -195 221 311 59 50 chr4 74928652 74928771 -109359891 + L2 LINE L2 2701 2820 -494 566 212 6 89 chr4 74930177 74930356 -109358306 + MER104 DNA Tc2 1 164 -16 197 273 0 18 chr4 74932057 74932112 -109356550 + L3 LINE CR1 1505 1558 -19 210 71 0 0 chr4 74932577 74932605 -109356057 + (T)n Simple_repeat Simple_repeat 1 28 0 207 0 0 0 chr4 74932695 74932718 -109355944 + (TTG)n Simple_repeat Simple_repeat 2 24 0 7766 30 0 8 chr4 74932851 74933755 -109354907 + MER11D LTR ERVK 1 897 0 184 189 44 11 chr4 74935594 74935684 -109352978 + (TA)n Simple_repeat Simple_repeat 2 94 0 2883 159 29 2 chr4 74935690 74936204 -109352458 - L1PA16 LINE L1 -5 6161 5634 217 404 68 0 chr4 74936858 74937019 -109351643 - MIR SINE MIR -85 177 6 26 0 0 0 chr4 74937253 74937279 -109351383 + AT_rich Low_complexity Low_complexity 1 26 0 2944 46 0 8 chr4 74937915 74938281 -109350381 - L1PA5 LINE L1 0 6154 5792 3561 226 59 33 chr4 74938287 74939537 -109349125 - Zaphod DNA AcHobo -64 3967 2685 1120 288 25 51 chr4 74939664 74940112 -109348550 + LTR16A1 LTR ERVL 20 455 -2 286 291 29 10 chr4 74940112 74940213 -109348449 - LTR33 LTR ERVL -408 113 11 255 304 73 50 chr4 74940326 74940672 -109347990 + MLT1L LTR MaLR 196 462 -49 225 119 0 51 chr4 74941606 74941665 -109346997 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 994 188 61 0 chr4 74942020 74942217 -109346445 - L1PA16 LINE L1 -8 6158 5950 182 276 129 55 chr4 74942372 74942535 -109346127 - L2 LINE L2 0 3313 3139 264 296 132 21 chr4 74942754 74942943 -109345719 - L2 LINE L2 -493 2821 2612 21 0 0 0 chr4 74942988 74943009 -109345653 + AT_rich Low_complexity Low_complexity 1 21 0 593 290 52 36 chr4 74944638 74944890 -109343772 - MIR SINE MIR -6 256 1 215 296 37 0 chr4 74944984 74945038 -109343624 - MIR SINE MIR -175 87 32 190 280 0 0 chr4 74947551 74947601 -109341061 + MIR SINE MIR 211 260 -2 1700 183 24 0 chr4 74948133 74948428 -109340234 - AluJb SINE Alu -10 302 1 371 315 19 0 chr4 74950613 74950721 -109337941 - MIR SINE MIR -130 132 23 523 241 84 58 chr4 74951952 74952143 -109336519 + MER117 DNA MER1_type 2 197 0 480 248 9 18 chr4 74952371 74952484 -109336178 + MER63 DNA MER1_type 691 802 -258 2430 81 7 0 chr4 74952801 74953109 -109335553 - AluSp SINE Alu -1 312 3 643 255 40 40 chr4 74953112 74953312 -109335350 + MIR SINE MIR 19 218 -44 299 309 0 0 chr4 74953380 74953477 -109335185 + C-rich Low_complexity Low_complexity 1 97 0 1202 276 164 7 chr4 74953582 74954144 -109334518 - L1M4 LINE L1 -1002 5144 4495 811 276 30 0 chr4 74954294 74954497 -109334165 + MIR SINE MIR 52 260 -2 1074 53 0 0 chr4 74954605 74954736 -109333926 - AluY SINE Alu -11 300 170 485 338 88 60 chr4 74955620 74956805 -109331857 - L2 LINE L2 -281 2991 1776 457 364 88 4 chr4 74956925 74957164 -109331498 - MIR SINE MIR -3 259 1 187 316 110 45 chr4 74957164 74957514 -109331148 - L2 LINE L2 -1662 1652 1280 1480 207 0 11 chr4 74957617 74957878 -109330784 + AluJb SINE Alu 32 289 -23 189 0 0 0 chr4 74957880 74957901 -109330761 + (TAAG)n Simple_repeat Simple_repeat 2 22 0 1371 201 97 0 chr4 74957902 74958210 -109330452 - MER58B DNA MER1_type -3 338 1 392 269 90 8 chr4 74958319 74958453 -109330209 + LTR33A LTR ERVL 1 145 -378 1707 270 110 25 chr4 74958464 74959180 -109329482 + LTR50 LTR ERVL 8 784 -11 551 280 75 67 chr4 74959193 74959554 -109329108 + LTR33A LTR ERVL 160 523 0 2102 128 35 29 chr4 74959994 74960338 -109328324 + THE1B LTR MaLR 19 364 0 1730 285 73 4 chr4 74960338 74960860 -109327802 + MER119 DNA MER1_type 26 583 0 953 292 52 34 chr4 74960867 74961254 -109327408 + L2 LINE L2 2916 3309 -4 657 307 122 52 chr4 74962399 74962826 -109325836 + LTR33A LTR ERVL 67 523 0 1260 199 23 4 chr4 74962843 74963105 -109325557 + MLT1B LTR MaLR 1 267 -123 261 276 25 40 chr4 74963425 74963624 -109325038 + L1 LINE L1 3593 3788 -2358 1431 176 32 16 chr4 74963941 74964253 -109324409 + L1MB3 LINE L1 5863 6179 -4 42 86 0 0 chr4 74965347 74965452 -109323210 + AT_rich Low_complexity Low_complexity 1 105 0 22 56 0 0 chr4 74965465 74965501 -109323161 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr4 74965618 74965647 -109323015 + AT_rich Low_complexity Low_complexity 1 29 0 676 296 65 70 chr4 74965684 74966256 -109322406 - L1MC4a LINE L1 -1922 5886 5318 323 310 14 7 chr4 74966480 74966625 -109322037 + GA-rich Low_complexity Low_complexity 1 146 0 271 200 107 0 chr4 74967353 74967428 -109321234 + MIR SINE MIR 136 218 -44 2305 87 7 0 chr4 74969405 74969705 -109318957 + AluSp SINE Alu 1 302 -11 21 36 0 0 chr4 74969708 74969736 -109318926 + AT_rich Low_complexity Low_complexity 1 28 0 1551 185 29 4 chr4 74970170 74970451 -109318211 - AluJo SINE Alu -11 301 14 24 32 0 0 chr4 74971541 74971572 -109317090 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 74971832 74971853 -109316809 + AT_rich Low_complexity Low_complexity 1 21 0 349 258 21 21 chr4 74971935 74972028 -109316634 + MER81 DNA DNA 22 114 0 266 333 135 26 chr4 74972259 74972415 -109316247 + MER5A DNA MER1_type 17 189 0 872 344 28 0 chr4 74974026 74974346 -109314316 - MER102b DNA MER1_type 0 341 13 21 36 0 0 chr4 74976880 74976908 -109311754 + AT_rich Low_complexity Low_complexity 1 28 0 2005 184 38 28 chr4 74977412 74977957 -109310705 - MLT2A2 LTR ERVL -1 553 1 193 385 0 0 chr4 74978080 74978158 -109310504 + MIR SINE MIR 57 134 -128 955 327 68 10 chr4 74978270 74978665 -109309997 + L2 LINE L2 316 733 -2581 676 267 21 88 chr4 74978658 74978988 -109309674 - L2 LINE L2 -1 3312 3005 * 1086 308 53 29 chr4 74978994 74979446 -109309216 + L2 LINE L2 714 1176 -2138 347 339 143 18 chr4 74979446 74979666 -109308996 + L2 LINE L2 1310 1501 -1813 2099 116 10 3 chr4 74979666 74979958 -109308704 - AluSq SINE Alu -19 294 1 347 339 143 18 chr4 74979958 74980079 -109308583 + L2 LINE L2 1501 1694 -1620 3442 62 0 7 chr4 74980087 74980537 -109308125 + LTR7 LTR ERV1 2 448 -2 15860 84 17 18 chr4 74980539 74983499 -109305163 + HERVH LTR ERV1 1 2992 -4721 967 120 7 0 chr4 74983485 74983635 -109305027 + HERVH LTR ERV1 3140 3290 -4423 * 3242 121 6 8 chr4 74983625 74984128 -109304534 + HERVH LTR ERV1 3492 3993 -3720 4134 149 9 6 chr4 74984131 74984790 -109303872 + HERVH LTR ERV1 4489 5149 -2564 1324 123 43 0 chr4 74984791 74985002 -109303660 + HERVH LTR ERV1 5600 5819 -1894 * 2543 76 45 13 chr4 74985000 74985380 -109303282 + HERVH LTR ERV1 7322 7713 0 3560 49 5 2 chr4 74985380 74985827 -109302835 + LTR7 LTR ERV1 1 448 -2 522 182 0 0 chr4 74985860 74985970 -109302692 + GA-rich Low_complexity Low_complexity 2 111 0 1960 306 55 11 chr4 74985970 74986722 -109301940 + L2 LINE L2 1707 2491 -823 1108 197 64 30 chr4 74986779 74987043 -109301619 + AluJb SINE Alu 29 301 -11 2029 219 54 0 chr4 74987043 74987486 -109301176 - MER67D LTR ERV1 -47 467 1 306 273 143 7 chr4 74987518 74987672 -109300990 + L2 LINE L2 2999 3173 -140 9340 225 27 14 chr4 74987674 74987692 -109300970 - L1 LINE L1 -1510 4636 4620 3630 173 7 6 chr4 74987692 74988381 -109300281 - L1PB4 LINE L1 -2 6154 5465 9340 225 27 14 chr4 74988381 74990795 -109297867 - L1 LINE L1 -1526 4620 2174 593 229 39 56 chr4 74990796 74990975 -109297687 + L2 LINE L2 3138 3313 0 297 248 28 28 chr4 74993028 74993137 -109295525 - L1ME4a LINE L1 -47 6074 5966 469 244 6 69 chr4 74993253 74993413 -109295249 - L2 LINE L2 -8 3305 3156 311 162 176 0 chr4 74993438 74993512 -109295150 - L1M4 LINE L1 -1750 4396 4310 316 308 60 0 chr4 74993561 74993678 -109294984 + L1MC1 LINE L1 26 149 -6391 445 224 36 99 chr4 74994002 74994225 -109294437 + L1MC1 LINE L1 917 1125 -5418 * 736 270 90 22 chr4 74994221 74994269 -109294393 + L1MC1 LINE L1 1815 1858 -4682 1765 144 18 64 chr4 74994269 74994596 -109294066 + AluJb SINE Alu 1 312 0 736 270 90 22 chr4 74994596 74994858 -109293804 + L1MC1 LINE L1 1858 2146 -4394 * 3870 187 63 31 chr4 74994854 74995260 -109293402 + L1MC1 LINE L1 3622 4013 -2714 2355 82 13 0 chr4 74995260 74995564 -109293098 - AluSp SINE Alu -5 308 1 3870 187 63 31 chr4 74995564 74997063 -109291599 + L1MC1 LINE L1 4013 6721 -6 182 157 0 20 chr4 74997188 74997239 -109291423 + (TA)n Simple_repeat Simple_repeat 2 51 0 2897 228 72 22 chr4 74997239 74997325 -109291337 + L1ME1 LINE L1 5237 5317 -849 1899 164 3 10 chr4 74997325 74997630 -109291032 + AluJo SINE Alu 1 303 -9 2897 228 72 22 chr4 74997630 74998416 -109290246 + L1ME1 LINE L1 5317 6161 -5 262 345 79 34 chr4 74998692 74998869 -109289793 - MLT1K LTR MaLR -250 338 154 577 281 115 61 chr4 74999814 75000241 -109288421 - MLT1J2 LTR MaLR 0 450 1 1390 165 0 30 chr4 75000585 75000822 -109287840 + AluSx SINE Alu 1 230 -82 24 77 0 0 chr4 75000850 75000902 -109287760 + AT_rich Low_complexity Low_complexity 1 52 0 2664 42 0 0 chr4 75000986 75001297 -109287365 + AluY SINE Alu 1 311 0 189 0 0 0 chr4 75001583 75001604 -109287058 + (TTCA)n Simple_repeat Simple_repeat 4 24 0 204 213 0 21 chr4 75001644 75001691 -109286971 + GA-rich Low_complexity Low_complexity 1 46 0 3553 132 6 2 chr4 75001839 75002363 -109286299 - MER1A DNA MER1_type 0 527 2 332 309 24 16 chr4 75002443 75002569 -109286093 + MLT2E LTR ERVL 29 155 -473 21 0 0 0 chr4 75004604 75004625 -109284037 + AT_rich Low_complexity Low_complexity 1 21 0 416 249 194 0 chr4 75004627 75004828 -109283834 - L1MEc LINE L1 -4581 1815 1576 243 274 95 0 chr4 75005116 75005200 -109283462 - Tigger5 DNA MER2_type -2230 93 2 23 54 0 0 chr4 75006205 75006242 -109282420 + AT_rich Low_complexity Low_complexity 1 37 0 279 320 0 0 chr4 75006416 75006491 -109282171 + MIR SINE MIR 33 107 -155 452 172 11 0 chr4 75007899 75007986 -109280676 - MER53 DNA DNA 0 189 102 200 111 28 0 chr4 75008054 75008090 -109280572 + (TTG)n Simple_repeat Simple_repeat 2 38 0 379 327 160 0 chr4 75008223 75008379 -109280283 - MER5A DNA MER1_type 0 189 9 189 234 0 64 chr4 75008660 75008707 -109279955 - L2 LINE L2 -9 3263 3220 261 293 0 50 chr4 75008848 75008947 -109279715 + L2 LINE L2 2959 3052 -261 22 0 0 0 chr4 75010553 75010575 -109278087 + AT_rich Low_complexity Low_complexity 1 22 0 32 26 0 0 chr4 75013249 75013288 -109275374 + AT_rich Low_complexity Low_complexity 1 39 0 224 309 18 0 chr4 75013356 75013411 -109275251 + L2 LINE L2 3138 3193 -79 538 208 25 0 chr4 75013875 75013995 -109274667 + MER67D LTR ERV1 388 510 -4 1451 187 78 133 chr4 75014072 75014613 -109274049 - MLT2B1 LTR ERVL -8 512 2 38 0 0 0 chr4 75014894 75014932 -109273730 + AT_rich Low_complexity Low_complexity 1 38 0 213 174 71 45 chr4 75014939 75015094 -109273568 + (TTAAA)n Simple_repeat Simple_repeat 5 163 0 184 245 0 20 chr4 75015251 75015300 -109273362 - MIR SINE MIR -109 153 106 25 0 0 0 chr4 75015453 75015478 -109273184 + AT_rich Low_complexity Low_complexity 1 25 0 435 327 13 40 chr4 75015871 75016021 -109272641 - MER91A DNA MER1_type -31 165 20 204 281 47 0 chr4 75016564 75016628 -109272034 - L2 LINE L2 -13 3259 3193 707 132 0 26 chr4 75016795 75016909 -109271753 - AluJb SINE Alu -12 300 190 218 288 14 68 chr4 75017267 75017340 -109271322 - L2 LINE L2 -3 3310 3242 281 252 19 65 chr4 75017344 75017451 -109271211 - L2 LINE L2 -47 3266 3165 205 378 78 35 chr4 75017674 75017957 -109270705 + L2 LINE L2 2567 2861 -453 203 162 0 0 chr4 75019240 75019277 -109269385 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 617 295 101 44 chr4 75020217 75020624 -109268038 + MLT1K LTR MaLR 155 584 -4 294 322 111 47 chr4 75020688 75021175 -109267487 - L2 LINE L2 -1135 2179 1662 28 71 0 0 chr4 75021779 75021835 -109266827 + AT_rich Low_complexity Low_complexity 1 56 0 24 32 0 0 chr4 75022697 75022728 -109265934 + AT_rich Low_complexity Low_complexity 1 31 0 190 320 0 0 chr4 75024179 75024229 -109264433 + L2 LINE L2 3158 3207 -65 22 0 0 0 chr4 75024512 75024534 -109264128 + AT_rich Low_complexity Low_complexity 1 22 0 445 264 172 0 chr4 75024635 75024798 -109263864 - MIR SINE MIR -19 243 53 25 51 0 0 chr4 75025139 75025178 -109263484 + AT_rich Low_complexity Low_complexity 1 39 0 1653 196 23 39 chr4 75025275 75025642 -109263020 + MLT1A1 LTR MaLR 1 621 -5 23 33 0 0 chr4 75026515 75026545 -109262117 + AT_rich Low_complexity Low_complexity 1 30 0 213 39 0 0 chr4 75028157 75028183 -109260479 + (CA)n Simple_repeat Simple_repeat 1 26 0 14697 44 1 3 chr4 75029532 75031391 -109257271 - L1PA4 LINE L1 -2106 4040 2187 11413 31 1 6 chr4 75031391 75033523 -109255139 + L1PA4 LINE L1 4034 6152 -3 184 200 22 22 chr4 75033765 75033810 -109254852 - L2 LINE L2 0 3272 3228 26 30 0 0 chr4 75033999 75034032 -109254630 + AT_rich Low_complexity Low_complexity 1 33 0 558 0 0 0 chr4 75036212 75036274 -109252388 + (TG)n Simple_repeat Simple_repeat 2 63 0 1909 117 11 4 chr4 75036620 75036901 -109251761 + AluSc SINE Alu 10 292 -17 207 114 0 0 chr4 75036901 75036936 -109251726 + (TA)n Simple_repeat Simple_repeat 2 36 0 187 324 40 14 chr4 75038185 75038259 -109250403 + L2 LINE L2 3186 3261 -11 23 0 0 0 chr4 75038263 75038286 -109250376 + AT_rich Low_complexity Low_complexity 1 23 0 814 228 94 5 chr4 75038473 75038675 -109249987 - MIR SINE MIR -13 249 30 1329 248 124 34 chr4 75039091 75039591 -109249071 + MLT1H LTR MaLR 5 549 0 349 279 51 74 chr4 75040871 75041086 -109247576 - LTR16C LTR ERVL 0 491 282 3041 240 24 32 chr4 75041490 75042797 -109245865 + L1ME1 LINE L1 4873 6161 -5 2654 45 0 5 chr4 75043324 75043381 -109245281 + L1PA6 LINE L1 5664 5720 -434 2654 74 19 0 chr4 75043381 75043730 -109244932 + L1PA6 LINE L1 5777 6150 -4 2654 45 0 5 chr4 75043730 75043741 -109244921 + L1PA6 LINE L1 5720 6150 -4 4714 253 71 45 chr4 75045503 75047657 -109241005 - L1MD1 LINE L1 -17 6619 4405 1181 213 14 37 chr4 75047651 75047849 -109240813 - L1MD1 LINE L1 -3653 2887 2686 * 1994 145 85 15 chr4 75047849 75048249 -109240413 - MSTA LTR MaLR 0 428 1 1181 213 14 37 chr4 75048249 75048634 -109240028 - L1MD1 LINE L1 -3854 2686 2323 255 61 0 0 chr4 75048670 75048703 -109239959 + (ATTG)n Simple_repeat Simple_repeat 2 34 0 4512 232 51 50 chr4 75048704 75050551 -109238111 - L1MD1 LINE L1 -4540 2000 41 21 57 0 0 chr4 75050787 75050822 -109237840 + AT_rich Low_complexity Low_complexity 1 35 0 1471 206 69 26 chr4 75051540 75051890 -109236772 + MLT1A1 LTR MaLR 1 365 0 202 150 0 25 chr4 75052176 75052216 -109236446 + (TAA)n Simple_repeat Simple_repeat 1 39 0 22 35 0 0 chr4 75053026 75053055 -109235607 + AT_rich Low_complexity Low_complexity 1 29 0 946 176 0 0 chr4 75053339 75053509 -109235153 + MER2 DNA MER2_type 41 210 -135 393 22 0 0 chr4 75054376 75054422 -109234240 + (TC)n Simple_repeat Simple_repeat 1 46 0 331 167 0 0 chr4 75054775 75054829 -109233833 + Tigger5 DNA MER2_type 2 55 -2268 497 191 11 0 chr4 75054836 75054925 -109233737 + Tigger5 DNA MER2_type 2234 2323 0 255 212 26 115 chr4 75055278 75055391 -109233271 - MER34 LTR ERV1 -3 582 450 27 0 0 0 chr4 75055408 75055435 -109233227 + AT_rich Low_complexity Low_complexity 1 27 0 229 250 0 0 chr4 75055436 75055484 -109233178 - MER34C LTR ERV1 -502 83 36 437 344 65 41 chr4 75055518 75055858 -109232804 + HAL1b LINE L1 388 735 -613 1312 68 0 0 chr4 75056097 75056259 -109232403 - MLT2A2 LTR ERVL 0 453 292 2079 130 3 7 chr4 75056291 75056599 -109232063 - MLT2A2 LTR ERVL -145 308 2 9603 129 40 19 chr4 75056946 75058567 -109230095 + L1PBa LINE L1 94 1748 -5115 203 56 56 0 chr4 75058570 75058606 -109230056 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 14063 210 9 7 chr4 75058606 75061918 -109226744 + L1PBa LINE L1 2802 6119 -743 6031 114 12 7 chr4 75061926 75062942 -109225720 + L1PB1 LINE L1 5113 6135 -16 315 212 53 71 chr4 75062966 75063079 -109225583 - L2 LINE L2 -16 3297 3187 1202 246 86 8 chr4 75063137 75063498 -109225164 - MLT1C LTR MaLR -74 393 5 1259 291 145 15 chr4 75063546 75064503 -109224159 + L1MB7 LINE L1 3097 4178 -1968 1835 161 0 0 chr4 75064529 75064809 -109223853 - AluSx SINE Alu -16 296 17 2203 251 22 12 chr4 75064880 75065472 -109223190 + L1MB7 LINE L1 5582 6176 -8 22 35 0 0 chr4 75065472 75065501 -109223161 + AT_rich Low_complexity Low_complexity 1 29 0 3025 223 15 1 chr4 75065847 75066569 -109222093 + L1MA10 LINE L1 3179 3910 -2236 * 4451 182 31 94 chr4 75066567 75067850 -109220812 + L1MA10 LINE L1 4610 5748 -586 342 0 0 0 chr4 75067850 75067888 -109220774 + (TG)n Simple_repeat Simple_repeat 2 39 0 4451 182 31 94 chr4 75067888 75068423 -109220239 + L1MA10 LINE L1 5748 6315 -19 881 261 57 8 chr4 75068448 75068800 -109219862 - L1M4 LINE L1 -1454 4692 4324 1395 153 58 11 chr4 75168838 75169112 -109119550 + L1MB4 LINE L1 5887 6173 -7 416 266 29 12 chr4 75169161 75169334 -109119328 + L1MDa LINE L1 2233 2408 -4132 330 183 110 0 chr4 75169324 75169406 -109119256 + L1M4 LINE L1 5423 5513 -665 * 293 156 0 0 chr4 75169408 75169453 -109119209 + L1M4 LINE L1 5582 5626 -558 * 755 264 72 34 chr4 75169450 75169995 -109118667 + L1MDa LINE L1 2449 2976 -3564 589 256 8 0 chr4 75171860 75171985 -109116677 - MER58B DNA MER1_type -6 335 210 541 186 98 0 chr4 75172089 75172191 -109116471 + LTR16C LTR ERVL 380 491 0 402 315 18 0 chr4 75173837 75173948 -109114714 + MIR SINE MIR 3 115 -147 22 35 0 0 chr4 75174213 75174242 -109114420 + AT_rich Low_complexity Low_complexity 1 29 0 382 103 141 0 chr4 75174451 75174529 -109114133 - L1P4 LINE L1 -714 5447 5359 1741 120 4 0 chr4 75174529 75174786 -109113876 - AluSx SINE Alu 0 307 50 1981 108 0 51 chr4 75174786 75175100 -109113562 - AluSc SINE Alu -10 299 1 424 150 0 0 chr4 75175100 75175160 -109113502 - AluSx SINE Alu -248 62 3 12217 152 8 12 chr4 75175161 75177310 -109111352 - L1P4 LINE L1 -815 5331 3191 454 289 78 17 chr4 75177411 75177591 -109111071 - HERV16 LTR ERVL -3870 1126 936 2281 107 0 3 chr4 75177654 75177954 -109110708 - AluSg SINE Alu -11 299 1 880 220 39 6 chr4 75178057 75178239 -109110423 + MER5A DNA MER1_type 1 188 -1 335 365 57 46 chr4 75178242 75178853 -109109809 - HERV16 LTR ERVL -4227 769 152 280 234 0 16 chr4 75178895 75178959 -109109703 - LTR16C LTR ERVL 0 491 429 326 278 69 72 chr4 75179870 75180176 -109108486 + L1MC4 LINE L1 6766 7070 -972 682 123 53 9 chr4 75180619 75180733 -109107929 + MLT1F LTR MaLR 424 542 0 265 248 184 0 chr4 75181573 75181682 -109106980 + MIR SINE MIR 132 260 -2 342 185 49 0 chr4 75182343 75182424 -109106238 + L1ME4a LINE L1 5742 5826 -295 677 289 44 37 chr4 75182426 75182696 -109105966 + L1MEc LINE L1 35 306 -6090 671 233 82 23 chr4 75182700 75182919 -109105743 + MER69B DNA AcHobo 731 962 -264 890 107 0 0 chr4 75182920 75183041 -109105621 + AluSg/x SINE Alu 176 296 -14 868 229 30 15 chr4 75183041 75183307 -109105355 + MER69B DNA AcHobo 954 1223 -3 244 322 59 42 chr4 75183549 75183667 -109104995 - L2 LINE L2 -3 3269 3150 448 232 98 36 chr4 75183761 75183985 -109104677 + MER112 DNA MER1_type 22 259 -1 26 0 0 0 chr4 75184506 75184532 -109104130 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr4 75184782 75184807 -109103855 + AT_rich Low_complexity Low_complexity 1 25 0 374 374 91 32 chr4 75185360 75185700 -109102962 + L2 LINE L2 2913 3272 0 213 132 0 0 chr4 75186828 75186866 -109101796 + (TA)n Simple_repeat Simple_repeat 1 38 0 2315 114 0 0 chr4 75186866 75187165 -109101497 - AluSx SINE Alu -13 299 1 205 345 112 0 chr4 75187428 75187544 -109101118 - L2 LINE L2 -686 2628 2500 247 265 103 34 chr4 75187949 75188066 -109100596 - MIR SINE MIR -52 210 86 192 324 44 0 chr4 75189921 75189989 -109098673 - MIR SINE MIR -86 176 106 2605 251 85 5 chr4 75190413 75191310 -109097352 - L1MB7 LINE L1 -295 6700 5550 1353 206 79 25 chr4 75191310 75191678 -109096984 + MLT1B LTR MaLR 1 388 -2 2605 251 85 5 chr4 75191678 75192190 -109096472 - L1MB7 LINE L1 -1445 5550 5080 576 227 11 16 chr4 75192183 75192230 -109096432 - L1MB7 LINE L1 -3803 3154 3108 * 1868 185 3 0 chr4 75192230 75192527 -109096135 - AluSx SINE Alu -14 298 1 576 227 11 16 chr4 75192527 75192664 -109095998 - L1MB7 LINE L1 -3849 3108 2971 2466 246 53 76 chr4 75192667 75193136 -109095526 - L1MB7 LINE L1 -5398 1461 983 2415 89 0 0 chr4 75193136 75193438 -109095224 + AluSx SINE Alu 1 302 -10 2466 246 53 76 chr4 75193438 75193958 -109094704 - L1MB7 LINE L1 -5876 983 494 1509 195 69 97 chr4 75193962 75194664 -109093998 - LTR8A LTR ERV1 -2 689 1 1207 311 55 13 chr4 75194664 75195136 -109093526 - L1MB7 LINE L1 -6363 496 5 1397 242 0 17 chr4 75195377 75195674 -109092988 - AluJo SINE Alu -20 292 1 459 314 32 45 chr4 75196280 75196500 -109092162 + LTR33 LTR ERVL 1 217 -304 820 186 40 25 chr4 75196678 75196877 -109091785 - Tigger7 DNA MER2_type -2 2585 2384 2783 85 20 5 chr4 75196910 75197308 -109091354 - MLT2A1 LTR ERVL -40 404 1 1123 242 100 28 chr4 75197447 75197876 -109090786 - MLT1C LTR MaLR 0 467 8 1112 220 34 113 chr4 75197883 75198065 -109090597 - MLT1C-int LTR MaLR 0 1371 1176 1873 176 93 18 chr4 75198065 75198463 -109090199 - MSTA LTR MaLR 0 428 1 1112 220 34 113 chr4 75198463 75198721 -109089941 - MLT1C-int LTR MaLR -195 1176 966 2103 219 34 73 chr4 75198866 75199600 -109089062 - MLT1C-int LTR MaLR -485 886 73 1578 256 35 33 chr4 75199600 75200147 -109088515 + LTR55 LTR ERV 1 548 0 2103 219 34 73 chr4 75200147 75200213 -109088449 - MLT1C-int LTR MaLR -1298 73 6 987 233 47 25 chr4 75200226 75200586 -109088076 - L1MD2 LINE L1 -425 5934 5567 640 103 0 0 chr4 75200595 75200692 -109087970 - MSTA LTR MaLR -331 97 1 758 212 27 81 chr4 75200695 75200917 -109087745 - MLT1-int LTR MaLR -160 1211 1002 1137 246 51 21 chr4 75200923 75201464 -109087198 - L1MD2 LINE L1 -623 5543 4984 240 33 0 0 chr4 75201558 75201588 -109087074 - LTR6A LTR ERV1 -462 102 73 1859 265 47 73 chr4 75202558 75203586 -109085076 - L1MD2 LINE L1 -1198 4948 3947 2216 100 7 3 chr4 75203586 75203877 -109084785 - AluSc SINE Alu -17 292 1 5246 156 53 8 chr4 75203908 75205177 -109083485 + L1MA8 LINE L1 4935 6266 -25 1609 187 7 11 chr4 75205201 75205484 -109083178 + AluJb SINE Alu 7 288 -24 1325 248 58 72 chr4 75205518 75206408 -109082254 - L1MD2 LINE L1 -2213 3933 3056 667 111 8 17 chr4 75206446 75206563 -109082099 + (TTCC)n Simple_repeat Simple_repeat 1 116 0 1304 219 62 0 chr4 75206563 75206851 -109081811 - AluJo SINE Alu -3 309 4 512 260 30 0 chr4 75206882 75207051 -109081611 - L1MD2 LINE L1 -3135 3011 2838 699 309 5 0 chr4 75207307 75207495 -109081167 + MIR SINE MIR 64 252 -10 354 325 62 19 chr4 75208554 75208714 -109079948 - MIR SINE MIR -55 207 41 690 281 47 67 chr4 75208983 75209236 -109079426 - MIR SINE MIR -13 249 2 2369 74 0 29 chr4 75209265 75209576 -109079086 + AluY SINE Alu 6 307 -4 1825 88 103 0 chr4 75210066 75210339 -109078323 + L1PA10 LINE L1 5863 6163 -5 181 336 80 9 chr4 75210701 75210814 -109077848 - L2 LINE L2 0 3313 3193 2078 135 0 10 chr4 75210835 75211138 -109077524 + AluSx SINE Alu 5 304 -8 224 222 0 0 chr4 75211256 75211310 -109077352 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 289 234 0 85 chr4 75217049 75217143 -109071519 + MER81 DNA DNA 3 88 -26 22 56 0 0 chr4 75217591 75217627 -109071035 + AT_rich Low_complexity Low_complexity 1 36 0 223 295 16 16 chr4 75217803 75217864 -109070798 - L2 LINE L2 -1 3312 3252 805 285 48 46 chr4 75218391 75218829 -109069833 - LTR16A LTR ERVL 0 450 12 1907 172 26 3 chr4 75222323 75222666 -109065996 - MLT1A1 LTR MaLR -12 353 3 427 284 70 1 chr4 75222666 75222823 -109065839 + L1MC4a LINE L1 6441 6585 -1200 2331 182 67 20 chr4 75222841 75223346 -109065316 - MER44D DNA MER2_type 0 605 22 279 0 0 0 chr4 75223398 75223429 -109065233 + (TG)n Simple_repeat Simple_repeat 2 32 0 790 278 88 0 chr4 75223429 75223725 -109064937 + L1MC4 LINE L1 6681 7006 -1036 * 3970 207 82 8 chr4 75223717 75224137 -109064525 + L1MD2 LINE L1 5298 5685 -674 1388 195 68 37 chr4 75224137 75224491 -109064171 - MLT1A1 LTR MaLR 0 365 1 3970 207 82 8 chr4 75224491 75225057 -109063605 + L1MD2 LINE L1 5685 6357 -2 318 220 0 0 chr4 75225053 75225144 -109063518 + L1MC4 LINE L1 6999 7089 -953 * 1327 237 237 4 chr4 75225146 75225681 -109062981 + L1MC4 LINE L1 7240 7899 -143 230 192 0 0 chr4 75225683 75225735 -109062927 + L1MC4 LINE L1 7986 8037 -5 527 178 5 132 chr4 75225746 75225959 -109062703 + L1MD3 LINE L1 7706 7891 -104 603 177 8 0 chr4 75227789 75227913 -109060749 + L1MA4 LINE L1 6165 6289 -11 2101 189 31 24 chr4 75228111 75228565 -109060097 - MSTB2 LTR MaLR 0 457 1 23 54 0 0 chr4 75229186 75229223 -109059439 + AT_rich Low_complexity Low_complexity 1 37 0 977 160 64 0 chr4 75230193 75230381 -109058281 + L1PA16 LINE L1 5966 6165 -1 279 309 146 1 chr4 75230516 75230651 -109058011 - MIR SINE MIR -66 142 40 335 41 20 0 chr4 75230666 75230715 -109057947 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 215 293 0 0 chr4 75233050 75233108 -109055554 + CT-rich Low_complexity Low_complexity 3 60 0 192 152 0 0 chr4 75233511 75233544 -109055118 + (TG)n Simple_repeat Simple_repeat 1 33 0 234 379 10 19 chr4 75233742 75233845 -109054817 - MIR SINE MIR -138 124 23 312 319 37 15 chr4 75234160 75234295 -109054367 - HAL1 LINE L1 -1837 670 533 429 302 88 5 chr4 75234313 75234518 -109054144 - HAL1 LINE L1 -2138 369 148 355 247 49 0 chr4 75234859 75234940 -109053722 + L2 LINE L2 3188 3272 0 1646 186 67 12 chr4 75235170 75235514 -109053148 - MLT1A1 LTR MaLR 0 365 3 2311 109 3 0 chr4 75236633 75236944 -109051718 + AluSp SINE Alu 1 312 -1 461 84 14 0 chr4 75236960 75237031 -109051631 + (GGAA)n Simple_repeat Simple_repeat 2 73 0 2024 142 4 48 chr4 75237146 75237381 -109051281 - L1M1 LINE L1 -462 5692 5448 1316 152 188 4 chr4 75237381 75237631 -109051031 + AluJb SINE Alu 1 296 -6 2024 142 4 48 chr4 75237631 75237746 -109050916 - L1M1 LINE L1 -706 5448 5330 387 0 0 0 chr4 75237746 75237789 -109050873 + (TA)n Simple_repeat Simple_repeat 1 43 0 912 52 0 0 chr4 75237790 75237905 -109050757 - L1PA5 LINE L1 -11 6143 6029 2024 142 4 48 chr4 75237905 75238328 -109050334 - L1M1 LINE L1 -823 5331 4975 25 0 0 0 chr4 75238708 75238733 -109049929 + AT_rich Low_complexity Low_complexity 1 25 0 285 370 55 22 chr4 75238783 75238964 -109049698 + MIR3 SINE MIR 9 195 -13 279 231 0 0 chr4 75239445 75239497 -109049165 + MIR SINE MIR 206 257 -5 233 250 19 0 chr4 75239507 75239559 -109049103 - MIR3 SINE MIR -51 157 105 219 85 64 0 chr4 75239969 75240016 -109048646 + (CA)n Simple_repeat Simple_repeat 1 50 0 537 113 0 0 chr4 75240334 75240414 -109048248 + MADE1 DNA Mariner 1 80 0 392 287 85 32 chr4 75241576 75241823 -109046839 - LTR16C LTR ERVL 0 491 232 206 164 18 0 chr4 75242263 75242318 -109046344 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 807 231 11 11 chr4 75244472 75244658 -109044004 - MER58A DNA MER1_type -2 222 37 21 0 0 0 chr4 75244775 75244796 -109043866 + AT_rich Low_complexity Low_complexity 1 21 0 211 361 103 0 chr4 75244797 75244894 -109043768 + MIR SINE MIR 38 144 -64 1910 144 3 53 chr4 75247669 75247988 -109040674 + AluSx SINE Alu 2 304 -8 1880 220 73 13 chr4 75248202 75248725 -109039937 - L1ME2 LINE L1 -55 6109 5556 1584 207 143 14 chr4 75248756 75249196 -109039466 - MLT1D LTR MaLR -8 497 1 470 283 164 18 chr4 75249292 75249511 -109039151 - MIR SINE MIR -2 260 10 592 261 135 19 chr4 75250264 75250471 -109038191 - MIR SINE MIR -30 232 2 1139 225 32 20 chr4 75252765 75253018 -109035644 - MIR SINE MIR 0 262 7 342 0 0 0 chr4 75253811 75253849 -109034813 + (T)n Simple_repeat Simple_repeat 1 38 0 592 278 81 5 chr4 75254045 75254243 -109034419 - MIR SINE MIR -48 214 2 532 307 68 10 chr4 75254464 75254669 -109033993 - MIR SINE MIR -32 230 14 531 269 14 85 chr4 75255526 75255749 -109032913 - L2 LINE L2 0 3313 3107 6089 206 45 13 chr4 75255802 75257573 -109031089 - L1 LINE L1 -2403 5162 3329 180 0 0 0 chr4 75257616 75257636 -109031026 + (CA)n Simple_repeat Simple_repeat 1 20 0 3675 173 26 61 chr4 75257636 75257670 -109030992 + L1MA4 LINE L1 3744 3778 -2368 2294 101 0 0 chr4 75257670 75257968 -109030694 + AluY SINE Alu 1 298 -13 3675 173 26 61 chr4 75257968 75258872 -109029790 + L1MA4 LINE L1 3778 4649 -1497 4622 88 11 0 chr4 75258898 75259554 -109029108 - L1PA11 LINE L1 -20 6154 5492 8798 221 26 28 chr4 75259654 75262873 -109025789 - L1PA12 LINE L1 -3143 4441 420 2429 202 15 17 chr4 75262888 75263483 -109025179 + L1MA4 LINE L1 4639 5232 -914 2617 163 24 5 chr4 75263583 75264148 -109024514 + L1MA4 LINE L1 5566 6162 -9 691 196 0 43 chr4 75264177 75264315 -109024347 + AluSq/x SINE Alu 1 132 -181 241 241 147 17 chr4 75264558 75264674 -109023988 + LTR16A LTR ERVL 320 450 0 684 346 111 27 chr4 75264687 75265179 -109023483 - L2 LINE L2 -230 3042 2522 21 36 0 0 chr4 75265295 75265323 -109023339 + AT_rich Low_complexity Low_complexity 1 28 0 1402 206 15 7 chr4 75265430 75265702 -109022960 - AluJo SINE Alu -21 291 18 30 0 0 0 chr4 75265737 75265767 -109022895 + AT_rich Low_complexity Low_complexity 1 30 0 5859 167 27 11 chr4 75265770 75267200 -109021462 - L1MC1 LINE L1 -18 6384 4933 182 191 21 0 chr4 75267252 75267299 -109021363 + (TA)n Simple_repeat Simple_repeat 1 48 0 224 379 64 14 chr4 75268116 75268256 -109020406 - L2 LINE L2 -385 2929 2783 1422 258 104 55 chr4 75268524 75269403 -109019259 - L1MC1 LINE L1 -2931 3284 2450 1138 90 0 24 chr4 75269403 75269569 -109019093 - L1PA10 LINE L1 -4 6164 6003 1422 258 104 55 chr4 75269569 75270371 -109018291 - L1MC1 LINE L1 -3765 2450 1535 595 282 50 86 chr4 75270384 75270781 -109017881 - L1MEd LINE L1 -1234 1667 1258 27 29 0 0 chr4 75271238 75271272 -109017390 + AT_rich Low_complexity Low_complexity 1 34 0 295 296 32 8 chr4 75273025 75273150 -109015512 + MIR SINE MIR 81 208 -54 2439 81 13 0 chr4 75273439 75273748 -109014914 - AluSp SINE Alu 0 313 1 2825 3 0 0 chr4 75274395 75274700 -109013962 - AluYa5 SINE Alu -6 305 1 712 216 0 0 chr4 75274863 75274988 -109013674 + FLAM_A SINE Alu 1 125 -8 38169 76 6 1 chr4 75275522 75280657 -109008005 - HERVL-A1 LTR ERVL -271 5383 223 2688 82 28 8 chr4 75280659 75281051 -109007611 - MLT2A1 LTR ERVL -44 400 1 428 142 242 67 chr4 75281051 75281170 -109007492 - MER44D DNA MER2_type -198 411 2 346 319 90 6 chr4 75281232 75281398 -109007264 - MIR SINE MIR -41 221 42 228 205 0 0 chr4 75281924 75281963 -109006699 + MLT1L LTR MaLR 352 390 -225 356 181 86 9 chr4 75281976 75282092 -109006570 + MER53 DNA DNA 2 126 -63 22 0 0 0 chr4 75282119 75282141 -109006521 + AT_rich Low_complexity Low_complexity 1 22 0 331 323 143 9 chr4 75283978 75284195 -109004467 + L1M2 LINE L1 993 1238 -5611 331 323 143 9 chr4 75285278 75285495 -109003167 + L1M2 LINE L1 993 1238 -5611 21 36 0 0 chr4 75285895 75285923 -109002739 + GC_rich Low_complexity Low_complexity 1 28 0 227 173 19 0 chr4 75286049 75286101 -109002561 + CT-rich Low_complexity Low_complexity 2 54 0 246 159 15 30 chr4 75287977 75288072 -109000590 + GA-rich Low_complexity Low_complexity 1 93 0 192 237 0 0 chr4 75289561 75289599 -108999063 - L2 LINE L2 -9 3263 3226 274 182 164 109 chr4 75289969 75290079 -108998583 - MIR SINE MIR -101 161 46 * 554 313 30 6 chr4 75290078 75290244 -108998418 - MIR SINE MIR -80 182 13 417 299 186 6 chr4 75291232 75291409 -108997253 - MIR SINE MIR -19 243 35 215 133 22 0 chr4 75293603 75293648 -108995014 + CT-rich Low_complexity Low_complexity 1 46 0 282 29 0 0 chr4 75297114 75297149 -108991513 + (TG)n Simple_repeat Simple_repeat 2 36 0 243 0 0 0 chr4 75297518 75297545 -108991117 + (CA)n Simple_repeat Simple_repeat 2 28 0 * 279 0 0 0 chr4 75297544 75297575 -108991087 + (GA)n Simple_repeat Simple_repeat 2 32 0 195 42 0 0 chr4 75299164 75299188 -108989474 + (TCCC)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr4 75300350 75300374 -108988288 + AT_rich Low_complexity Low_complexity 1 24 0 276 53 0 0 chr4 75300596 75300634 -108988028 + (T)n Simple_repeat Simple_repeat 1 38 0 308 230 68 0 chr4 75301302 75301376 -108987286 + L1MC4 LINE L1 6640 6718 -1324 285 98 0 0 chr4 75303469 75303510 -108985152 + (TG)n Simple_repeat Simple_repeat 1 41 0 219 306 0 14 chr4 75303657 75303729 -108984933 + (CGG)n Simple_repeat Simple_repeat 2 72 0 204 125 0 0 chr4 75303928 75303960 -108984702 + (CGG)n Simple_repeat Simple_repeat 3 34 0 319 276 71 99 chr4 75304211 75304672 -108983990 - L1M2 LINE L1 -5443 1406 476 226 294 12 0 chr4 75304834 75304919 -108983743 + (CCG)n Simple_repeat Simple_repeat 2 87 0 207 133 0 0 chr4 75305347 75305392 -108983270 + (CA)n Simple_repeat Simple_repeat 2 46 0 22 0 0 0 chr4 75307112 75307134 -108981528 + AT_rich Low_complexity Low_complexity 1 22 0 213 267 46 105 chr4 75307206 75307361 -108981301 + MIR SINE MIR 40 186 -22 240 35 0 0 chr4 75307587 75307616 -108981046 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 651 63 86 4 chr4 75309522 75309785 -108978877 + (CA)n Simple_repeat Simple_repeat 1 284 0 584 85 52 44 chr4 75309807 75310118 -108978544 + (CA)n Simple_repeat Simple_repeat 1 313 0 216 0 0 0 chr4 75310156 75310180 -108978482 + (CA)n Simple_repeat Simple_repeat 2 25 0 242 333 9 0 chr4 75310710 75310815 -108977847 + (TA)n Simple_repeat Simple_repeat 2 107 0 247 214 0 18 chr4 75310840 75310896 -108977766 - MIR SINE MIR -34 228 174 272 70 23 0 chr4 75311473 75311516 -108977146 + (CA)n Simple_repeat Simple_repeat 2 45 0 297 140 0 0 chr4 75311528 75311585 -108977077 + (TA)n Simple_repeat Simple_repeat 2 58 0 442 157 20 10 chr4 75312033 75312135 -108976527 + GA-rich Low_complexity Low_complexity 3 105 0 382 59 0 29 chr4 75313480 75313548 -108975114 + (TA)n Simple_repeat Simple_repeat 2 67 0 255 319 76 38 chr4 75313917 75314074 -108974588 - MER5A DNA MER1_type -26 163 1 2127 91 0 14 chr4 75314400 75314686 -108973976 - AluSq SINE Alu -3 310 29 413 339 39 16 chr4 75315370 75315497 -108973165 + MIR3 SINE MIR 31 160 -48 1627 164 20 24 chr4 75315608 75315906 -108972756 - AluJo SINE Alu -15 297 1 185 278 0 0 chr4 75315907 75315943 -108972719 + MER5A DNA MER1_type 126 161 -28 234 321 109 30 chr4 75315974 75316139 -108972523 - MER5B DNA MER1_type 0 178 1 2255 152 47 26 chr4 75316265 75316647 -108972015 + MLT1B LTR MaLR 1 390 0 285 240 111 10 chr4 75317598 75317700 -108970962 + MIR3 SINE MIR 78 190 -18 342 80 0 0 chr4 75319030 75319080 -108969582 + (TA)n Simple_repeat Simple_repeat 1 50 0 22 0 0 0 chr4 75319095 75319117 -108969545 + AT_rich Low_complexity Low_complexity 1 22 0 182 62 31 0 chr4 75319133 75319165 -108969497 + (TA)n Simple_repeat Simple_repeat 1 33 0 2197 150 107 20 chr4 75319435 75319829 -108968833 - MSTC LTR MaLR 0 428 1 261 294 98 0 chr4 75320886 75320988 -108967674 + MIR SINE MIR 94 205 -57 25 31 0 0 chr4 75322888 75322920 -108965742 + AT_rich Low_complexity Low_complexity 1 32 0 788 224 24 18 chr4 75323181 75323346 -108965316 - FRAM SINE Alu 0 166 1 543 277 99 56 chr4 75324446 75326182 -108962480 - L1MC4a LINE L1 -452 5790 4060 206 233 0 0 chr4 75326722 75326765 -108961897 - L2 LINE L2 -4 3309 3267 1610 136 27 168 chr4 75326779 75327183 -108961479 - MER7A DNA MER2_type -1 345 1 1486 264 114 132 chr4 75327271 75328878 -108959784 + L2 LINE L2 1090 2667 -647 583 262 71 27 chr4 75328875 75329058 -108959604 - L2 LINE L2 -588 2726 2536 * 1906 224 87 44 chr4 75329059 75329833 -108958829 - L1MC5 LINE L1 -36 7925 7119 558 293 46 23 chr4 75329844 75330018 -108958644 - LTR16C LTR ERVL -14 477 300 742 207 108 123 chr4 75330344 75330798 -108957864 - L1MC5 LINE L1 -832 7129 6683 1675 294 88 15 chr4 75330798 75331459 -108957203 - L2 LINE L2 -774 2540 1832 262 373 39 0 chr4 75331479 75331632 -108957030 - L1M4 LINE L1 -1321 4825 4667 567 263 34 37 chr4 75331651 75331974 -108956688 + L1M4 LINE L1 4226 4547 -1599 24 85 0 0 chr4 75333572 75333631 -108955031 + AT_rich Low_complexity Low_complexity 1 59 0 375 297 137 28 chr4 75333808 75334020 -108954642 + MIR SINE MIR 12 246 -16 257 289 123 9 chr4 75334251 75334365 -108954297 - MIR3 SINE MIR -24 184 58 4071 197 88 36 chr4 75334546 75335529 -108953133 - MER45B DNA AcHobo -5 1035 2 22 70 0 0 chr4 75336315 75336358 -108952304 + AT_rich Low_complexity Low_complexity 1 43 0 1755 122 72 32 chr4 75336771 75337049 -108951613 - AluJo SINE Alu 0 312 24 1995 130 0 7 chr4 75338260 75338545 -108950117 + AluSg SINE Alu 1 306 0 208 0 0 0 chr4 75338545 75338568 -108950094 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 189 325 86 34 chr4 75338801 75338918 -108949744 + L3 LINE CR1 1218 1340 -237 986 214 63 0 chr4 75339130 75339336 -108949326 + MER20 DNA MER1_type 1 219 0 2162 183 100 39 chr4 75339407 75339925 -108948737 - MER44D DNA MER2_type 0 605 1 1409 292 138 11 chr4 75341276 75341885 -108946777 + L2 LINE L2 87 772 -2542 2992 335 137 21 chr4 75341907 75342212 -108946450 + L2 LINE L2 1194 1462 -1851 991 189 31 54 chr4 75342212 75342434 -108946228 + MER20 DNA MER1_type 3 219 0 2992 335 137 21 chr4 75342434 75343832 -108944830 + L2 LINE L2 1462 3107 -206 531 0 0 0 chr4 75343841 75343900 -108944762 + (CTATT)n Simple_repeat Simple_repeat 2 60 0 1654 171 7 4 chr4 75343901 75344181 -108944481 - AluJo SINE Alu -31 281 1 209 315 27 72 chr4 75344197 75344308 -108944354 + L2 LINE L2 3166 3271 -42 26 88 0 0 chr4 75346019 75346087 -108942575 + AT_rich Low_complexity Low_complexity 1 68 0 407 288 169 0 chr4 75346205 75346389 -108942273 - L3 LINE CR1 -125 1452 1238 281 232 66 55 chr4 75346473 75346654 -108942008 + L1MB2 LINE L1 5562 5744 -2064 22 80 0 0 chr4 75346941 75346991 -108941671 + AT_rich Low_complexity Low_complexity 1 50 0 205 302 198 19 chr4 75347293 75347399 -108941263 - L3 LINE CR1 -337 1240 1116 245 312 32 64 chr4 75347431 75347649 -108941013 - L3 LINE CR1 -569 1008 798 1926 192 33 48 chr4 75347742 75348226 -108940436 + L1MB2 LINE L1 5694 6170 -1 2012 119 22 7 chr4 75348350 75348628 -108940034 + AluSx SINE Alu 3 284 -28 22 0 0 0 chr4 75349131 75349153 -108939509 + AT_rich Low_complexity Low_complexity 1 22 0 2945 83 4 18 chr4 75349185 75349642 -108939020 + L1P4 LINE L1 5339 5789 -374 2134 134 42 0 chr4 75349744 75350147 -108938515 + L1PA13 LINE L1 5740 6159 -4 1706 162 19 29 chr4 75350235 75350549 -108938113 + AluJo SINE Alu 1 311 -1 2026 137 7 0 chr4 75351603 75351887 -108936775 - AluSx SINE Alu -6 306 21 32 57 0 0 chr4 75351900 75351953 -108936709 + AT_rich Low_complexity Low_complexity 1 53 0 195 409 15 0 chr4 75351966 75352124 -108936538 - MIR SINE MIR -6 202 41 2078 143 3 0 chr4 75352234 75352535 -108936127 - AluSx SINE Alu -10 302 1 1675 179 4 0 chr4 75352561 75352863 -108935799 + AluJb SINE Alu 3 305 0 329 244 110 0 chr4 75352878 75352960 -108935702 - MIR SINE MIR -120 142 52 315 310 52 43 chr4 75352980 75353096 -108935566 - L2 LINE L2 -2 3270 3154 278 67 22 0 chr4 75353961 75354006 -108934656 + (TA)n Simple_repeat Simple_repeat 1 46 0 273 233 67 11 chr4 75354362 75354452 -108934210 + L1ME1 LINE L1 6054 6148 -18 433 255 7 94 chr4 75355247 75355396 -108933266 - MIR SINE MIR -56 206 71 1561 164 37 77 chr4 75355783 75356106 -108932556 - AluJo SINE Alu -2 310 1 1817 89 148 0 chr4 75356176 75356433 -108932229 - AluSx SINE Alu -7 295 1 448 265 49 69 chr4 75358138 75358329 -108930333 - L2 LINE L2 -2 3311 3125 602 280 19 19 chr4 75358329 75358486 -108930176 + MIR SINE MIR 2 158 -104 1118 316 89 11 chr4 75358555 75358850 -108929812 - L2 LINE L2 -211 3102 2832 2095 150 0 0 chr4 75358850 75359157 -108929505 + AluSp SINE Alu 1 307 -6 1118 316 89 11 chr4 75359157 75359185 -108929477 - L2 LINE L2 -481 2832 2808 1522 214 7 13 chr4 75359185 75359494 -108929168 + AluJo SINE Alu 1 307 -5 1118 316 89 11 chr4 75359494 75359772 -108928890 - L2 LINE L2 -505 2808 2448 321 64 0 0 chr4 75360126 75360173 -108928489 + L1MA3 LINE L1 6259 6305 0 224 260 0 0 chr4 75362116 75362166 -108926496 + T-rich Low_complexity Low_complexity 1 50 0 1882 158 0 46 chr4 75362882 75363205 -108925457 + AluJo SINE Alu 1 308 -4 853 213 167 30 chr4 75364034 75364363 -108924299 - MLT1A2 LTR MaLR 0 374 1 197 100 50 0 chr4 75369628 75369668 -108918994 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 414 85 0 0 chr4 75369680 75369739 -108918923 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 200 180 0 20 chr4 75375626 75375658 -108913004 + CT-rich Low_complexity Low_complexity 4 36 -16 736 169 0 37 chr4 75375658 75375794 -108912868 - FLAM_C SINE Alu -1 132 2 200 180 0 20 chr4 75375794 75375811 -108912851 + CT-rich Low_complexity Low_complexity 36 52 0 23 0 0 0 chr4 75377126 75377149 -108911513 + AT_rich Low_complexity Low_complexity 1 23 0 361 274 11 0 chr4 75378083 75378178 -108910484 + MIR SINE MIR 167 262 0 22 56 0 0 chr4 75378193 75378229 -108910433 + AT_rich Low_complexity Low_complexity 1 36 0 1308 80 21 5 chr4 75378450 75378638 -108910024 - L1PB1 LINE L1 -1 6150 5960 25 31 0 0 chr4 75378644 75378676 -108909986 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 75379729 75379750 -108908912 + AT_rich Low_complexity Low_complexity 1 21 0 304 276 26 0 chr4 75379927 75380003 -108908659 - MIR SINE MIR -128 134 57 302 305 105 0 chr4 75381107 75381212 -108907450 + MIR SINE MIR 37 152 -110 401 322 61 11 chr4 75381425 75381605 -108907057 + MIR SINE MIR 37 225 -37 346 391 0 19 chr4 75383060 75383216 -108905446 + MER5A DNA MER1_type 15 167 -22 2172 125 3 0 chr4 75384235 75384530 -108904132 - AluSq SINE Alu -16 297 2 284 316 51 0 chr4 75384791 75384889 -108903773 + L2 LINE L2 3170 3272 0 28 29 0 0 chr4 75385117 75385152 -108903510 + AT_rich Low_complexity Low_complexity 1 35 0 2179 118 3 0 chr4 75386422 75386762 -108901900 + AluSx SINE Alu 1 312 0 186 256 128 13 chr4 75387390 75387468 -108901194 - MIR SINE MIR -168 94 8 369 290 51 133 chr4 75387538 75387928 -108900734 + L2 LINE L2 2831 3188 -84 21 0 0 0 chr4 75389405 75389426 -108899236 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 75390588 75390617 -108898045 + AT_rich Low_complexity Low_complexity 1 29 0 2040 80 3 55 chr4 75391266 75391555 -108897107 - AluSc SINE Alu -14 295 22 22 35 0 0 chr4 75392326 75392355 -108896307 + AT_rich Low_complexity Low_complexity 1 29 0 6878 63 0 0 chr4 75393020 75394565 -108894097 - L1PA4 LINE L1 -3 6152 4603 462 288 207 23 chr4 75399098 75399407 -108889255 + LTR16A LTR ERVL 7 372 -85 372 165 63 0 chr4 75399421 75399500 -108889162 + MER53 DNA DNA 25 108 -81 1931 296 121 26 chr4 75399998 75401148 -108887514 + L2 LINE L2 1976 3311 -2 5107 153 79 19 chr4 75401628 75402571 -108886091 - L1MA6 LINE L1 -4 6296 5282 297 0 0 0 chr4 75402571 75402604 -108886058 + (TTA)n Simple_repeat Simple_repeat 2 34 0 5107 153 79 19 chr4 75402604 75402886 -108885776 - L1MA6 LINE L1 -1018 5282 5019 1468 199 54 44 chr4 75403171 75403557 -108885105 + MLT1B LTR MaLR 1 390 0 232 244 0 67 chr4 75403666 75403756 -108884906 + T-rich Low_complexity Low_complexity 2 85 0 2036 52 107 4 chr4 75403923 75404194 -108884468 - AluY SINE Alu -12 299 1 2884 138 4 21 chr4 75404217 75404694 -108883968 - L1PA8 LINE L1 0 6172 5704 5076 103 103 27 chr4 75405133 75406202 -108882460 + pTR5 LTR ERV1 741 2025 -413 255 296 0 0 chr4 75406202 75406283 -108882379 + LTR30 LTR ERV1 544 624 -98 1466 124 0 19 chr4 75406283 75406525 -108882137 + pTR5 LTR ERV1 177 2295 -143 261 320 150 7 chr4 75408874 75409027 -108879635 - MIR SINE MIR -34 228 54 582 225 76 23 chr4 75410710 75410902 -108877760 - MIR SINE MIR -58 150 3 425 152 0 0 chr4 75411341 75411407 -108877255 - MER5A DNA MER1_type 0 189 124 2047 154 0 0 chr4 75411515 75411894 -108876768 - AluSx SINE Alu 0 379 1 825 202 71 0 chr4 75412414 75412582 -108876080 + MER5A DNA MER1_type 5 184 -5 185 304 22 0 chr4 75412756 75412802 -108875860 - MER5B DNA MER1_type -4 174 128 239 320 48 24 chr4 75412843 75412968 -108875694 - MER5B DNA MER1_type -50 128 1 1797 167 3 20 chr4 75413362 75413668 -108874994 + AluJo SINE Alu 1 301 -11 297 0 0 0 chr4 75414713 75414746 -108873916 + (CA)n Simple_repeat Simple_repeat 2 34 0 1243 222 77 28 chr4 75414874 75415370 -108873292 + Charlie7 DNA MER1_type 2009 2528 -84 205 250 0 0 chr4 75415866 75415910 -108872752 + (TGGA)n Simple_repeat Simple_repeat 3 46 0 189 298 0 0 chr4 75416198 75416245 -108872417 - MIR SINE MIR -7 255 209 574 311 15 15 chr4 75416692 75416888 -108871774 - MIR SINE MIR -18 244 49 221 226 0 0 chr4 75417363 75417416 -108871246 + (TCTCTG)n Simple_repeat Simple_repeat 3 55 0 2343 126 9 0 chr4 75418238 75418580 -108870082 + MER7A DNA MER2_type 4 346 0 24 0 0 0 chr4 75418679 75418703 -108869959 + AT_rich Low_complexity Low_complexity 1 24 0 4379 204 31 32 chr4 75418711 75420701 -108867961 + L1MB8 LINE L1 4187 6169 -9 26 0 0 0 chr4 75421482 75421508 -108867154 + AT_rich Low_complexity Low_complexity 1 26 0 360 0 0 0 chr4 75421715 75421755 -108866907 + (TG)n Simple_repeat Simple_repeat 1 40 0 191 255 21 0 chr4 75422163 75422210 -108866452 - L2 LINE L2 -5 3308 3261 200 222 0 0 chr4 75422222 75422258 -108866404 + MIR SINE MIR 109 144 -64 1559 138 9 101 chr4 75422899 75423067 -108865595 - AluJb SINE Alu -16 296 171 3584 45 2 0 chr4 75423067 75423513 -108865149 - L1PA5 LINE L1 0 6154 5708 1559 138 9 101 chr4 75423513 75423670 -108864992 - AluJb SINE Alu -141 171 1 254 73 24 0 chr4 75424778 75424819 -108863843 + (CAA)n Simple_repeat Simple_repeat 1 42 0 1776 41 0 9 chr4 75426452 75426673 -108861989 - L1PA8 LINE L1 -6 6166 5948 2200 125 0 0 chr4 75427320 75427632 -108861030 + AluSx SINE Alu 1 312 0 218 139 47 0 chr4 75428715 75428758 -108859904 + (TG)n Simple_repeat Simple_repeat 2 46 0 756 338 80 93 chr4 75429427 75430581 -108858081 - L2 LINE L2 -5 3267 2144 350 85 17 0 chr4 75430581 75430640 -108858022 + (TA)n Simple_repeat Simple_repeat 2 61 0 756 338 80 93 chr4 75430640 75431595 -108857067 - L2 LINE L2 -1128 2144 1178 244 329 0 0 chr4 75431696 75431772 -108856890 - MIR3 SINE MIR -10 198 123 1468 108 45 18 chr4 75431860 75432082 -108856580 - MER30 DNA MER1_type 0 230 3 222 37 0 0 chr4 75432094 75432121 -108856541 + (TA)n Simple_repeat Simple_repeat 1 27 0 651 334 108 37 chr4 75433742 75434719 -108853943 - L2 LINE L2 -5 3267 2221 250 313 118 7 chr4 75434827 75434971 -108853691 - L2 LINE L2 -1917 1397 1238 1333 96 0 0 chr4 75436592 75436759 -108851903 - AluSg SINE Alu -115 195 29 23 54 0 0 chr4 75437511 75437548 -108851114 + AT_rich Low_complexity Low_complexity 1 37 0 2226 117 0 0 chr4 75439840 75440139 -108848523 - AluSx SINE Alu -13 299 1 183 129 0 0 chr4 75440305 75440336 -108848326 + (TA)n Simple_repeat Simple_repeat 2 32 0 1163 130 48 4 chr4 75440607 75440838 -108847824 - L1MA8 LINE L1 -1 6290 6050 184 265 41 0 chr4 75440963 75441012 -108847650 + MIR3 SINE MIR 126 176 -32 183 320 0 0 chr4 75441221 75441271 -108847391 - L2 LINE L2 -1 3271 3222 941 252 121 61 chr4 75441380 75441809 -108846853 + LTR33 LTR ERVL 60 514 -7 20846 183 26 71 chr4 75442470 75443210 -108845452 + L1P4 LINE L1 1 773 -6833 2227 114 16 0 chr4 75443210 75443516 -108845146 - AluSp SINE Alu -2 311 1 20846 183 26 71 chr4 75443516 75445948 -108842714 + L1P4 LINE L1 773 3313 -4293 2749 25 0 16 chr4 75445948 75446266 -108842396 + AluYb8 SINE Alu 1 313 -5 20846 183 26 71 chr4 75446266 75447707 -108840955 + L1P4 LINE L1 3313 4818 -2788 204 40 0 0 chr4 75447707 75447732 -108840930 + (TTA)n Simple_repeat Simple_repeat 3 27 0 7270 60 5 0 chr4 75447732 75449433 -108839229 - L1PA6 LINE L1 -18 6136 4431 20846 183 26 71 chr4 75449433 75450921 -108837741 + L1P4 LINE L1 4816 6901 -705 832 188 45 0 chr4 75450926 75451080 -108837582 + MLT1B LTR MaLR 219 379 -11 678 255 7 45 chr4 75451250 75451523 -108837139 - MLT2F LTR ERVL -64 599 280 550 245 7 20 chr4 75451538 75451689 -108836973 - MLT2F LTR ERVL -514 149 1 361 368 60 3 chr4 75452044 75452329 -108836333 + L1M4 LINE L1 3984 4284 -1862 2312 269 97 14 chr4 75452329 75452730 -108835932 + L1M2 LINE L1 1164 1530 -4866 4136 67 4 11 chr4 75452730 75453286 -108835376 + L1PA8 LINE L1 5621 6172 0 2312 269 97 14 chr4 75453286 75454048 -108834614 + L1M2 LINE L1 1530 2369 -4027 205 209 33 55 chr4 75454082 75454264 -108834398 + (TAA)n Simple_repeat Simple_repeat 1 178 0 2335 251 79 7 chr4 75454275 75454603 -108834059 + L1M2 LINE L1 2345 2648 -3567 2090 136 3 0 chr4 75454603 75454905 -108833757 + AluSx SINE Alu 1 303 -9 2335 251 79 7 chr4 75454905 75455485 -108833177 + L1M2 LINE L1 2648 3319 -2896 706 301 141 4 chr4 75455501 75455777 -108832885 + LTR16A LTR ERVL 137 450 0 248 281 0 12 chr4 75456445 75456527 -108832135 + L1P4 LINE L1 5350 5430 -735 21181 174 12 15 chr4 75456838 75457673 -108830989 - L1PA13 LINE L1 -3 6811 5975 2098 78 4 4 chr4 75457673 75457942 -108830720 - AluSg SINE Alu -9 301 33 21181 174 12 15 chr4 75457942 75462530 -108826132 - L1PA13 LINE L1 -839 5975 1398 448 326 79 11 chr4 75462541 75462731 -108825931 - L1PA13 LINE L1 -5529 1258 1056 237 302 63 8 chr4 75462802 75462928 -108825734 + L1ME4a LINE L1 5984 6116 -5 22 0 0 0 chr4 75464225 75464247 -108824415 + AT_rich Low_complexity Low_complexity 1 22 0 1670 266 47 26 chr4 75466057 75466125 -108822537 - MLT1E2 LTR MaLR 0 626 561 2333 67 3 0 chr4 75466125 75466408 -108822254 + AluY SINE Alu 1 284 -27 261 0 0 0 chr4 75466408 75466437 -108822225 + (CA)n Simple_repeat Simple_repeat 2 30 0 1670 266 47 26 chr4 75466437 75466904 -108821758 - MLT1E2 LTR MaLR -64 562 79 5850 86 22 6 chr4 75466912 75467734 -108820928 - L1PA11 LINE L1 -6 6168 5334 321 178 9 159 chr4 75467736 75467843 -108820819 - MLT1E2 LTR MaLR -535 91 1 285 301 48 24 chr4 75468834 75468917 -108819745 - L2 LINE L2 -38 3234 3150 2724 204 53 2 chr4 75468932 75469534 -108819128 + L1MB7 LINE L1 5531 6163 -21 542 163 33 0 chr4 75470983 75471075 -108817587 + FLAM_C SINE Alu 33 127 -16 385 292 152 27 chr4 75471328 75471687 -108816975 - LTR16A LTR ERVL 0 450 14 462 328 65 32 chr4 75471804 75472204 -108816458 - HERV16 LTR ERVL -428 5336 4924 2426 134 83 2 chr4 75472385 75472781 -108815881 - MSTA LTR MaLR 0 428 1 9206 166 22 15 chr4 75472781 75474421 -108814241 - MSTA-int LTR MaLR 0 1651 1 2297 151 84 0 chr4 75474421 75474813 -108813849 - MSTA LTR MaLR 0 428 4 489 189 22 0 chr4 75474925 75475015 -108813647 + MLT1B LTR MaLR 299 390 0 1297 313 60 2 chr4 75475049 75475483 -108813179 - HERV16 LTR ERVL -2139 2857 2399 567 277 0 108 chr4 75475476 75475834 -108812828 - HERV16 LTR ERVL -2824 2172 1905 * 2262 332 38 29 chr4 75475889 75477229 -108811433 - HERV16 LTR ERVL -3213 1783 366 717 309 5 0 chr4 75477467 75477690 -108810972 + HERV16 LTR ERVL 1041 1264 -3732 438 287 36 72 chr4 75477733 75477984 -108810678 - HERV16 LTR ERVL -4716 280 39 2441 214 114 36 chr4 75478415 75479090 -108809572 - L1ME1 LINE L1 -43 6123 5502 1882 146 0 0 chr4 75479090 75479364 -108809298 - AluSq SINE Alu -5 308 35 2441 214 114 36 chr4 75479364 75480230 -108808432 - L1ME1 LINE L1 -664 5502 4461 2488 99 0 0 chr4 75480241 75480573 -108808089 - THE1A LTR MaLR -23 332 1 4106 235 85 52 chr4 75480574 75482689 -108805973 - L1ME1 LINE L1 -1683 4463 2280 2228 123 0 3 chr4 75482866 75483167 -108805495 - AluSx SINE Alu -7 305 6 1042 260 0 13 chr4 75483824 75484157 -108804505 - AluYb8 SINE Alu 0 329 1 285 71 24 0 chr4 75484444 75484486 -108804176 - THE1-int LTR MaLR -319 1261 1219 768 167 94 0 chr4 75484490 75484628 -108804034 - THE1-int LTR MaLR -318 1262 1112 802 183 13 7 chr4 75484629 75484782 -108803880 - AluJo SINE Alu -154 158 5 1037 182 99 0 chr4 75484788 75484980 -108803682 - Tigger3(Golem) DNA MER2_type -2818 211 1 2230 159 18 0 chr4 75484982 75485373 -108803289 + L1M2 LINE L1 5383 5780 -532 271 274 0 11 chr4 75485392 75485487 -108803175 + (TA)n Simple_repeat Simple_repeat 1 94 0 467 297 81 0 chr4 75487210 75487358 -108801304 - MER63A DNA MER1_type 0 210 51 200 355 9 0 chr4 75487582 75487689 -108800973 + L2 LINE L2 295 402 -2912 1333 146 61 24 chr4 75487796 75488042 -108800620 - THE1C LTR MaLR 0 375 121 368 86 0 17 chr4 75488143 75488201 -108800461 + THE1C-int LTR MaLR 1524 1580 0 2415 133 3 16 chr4 75488204 75488581 -108800081 + THE1C LTR MaLR 4 375 0 6244 106 33 23 chr4 75488604 75489628 -108799034 + Tigger3b DNA MER2_type 198 1231 0 970 115 24 154 chr4 75489650 75489903 -108798759 + THE1C LTR MaLR 1 220 -155 1565 199 170 105 chr4 75490003 75490646 -108798016 - LTR49-int LTR ERV1 -5062 1269 580 1601 171 0 63 chr4 75490646 75490979 -108797683 - AluJo SINE Alu 0 312 1 1565 199 170 105 chr4 75490979 75490999 -108797663 - LTR49-int LTR ERV1 -5751 580 563 2209 144 3 6 chr4 75490999 75491339 -108797323 + MER50 LTR ERV1 373 711 -23 1017 201 0 16 chr4 75491353 75491537 -108797125 - LTR49-int LTR ERV1 -6150 181 1 964 169 70 39 chr4 75491539 75491866 -108796796 - LTR49 LTR ERV1 0 595 222 6870 64 8 1 chr4 75491970 75493405 -108795257 + L1PA7 LINE L1 4710 6151 -3 251 223 64 21 chr4 75493511 75493605 -108795057 - L1M4 LINE L1 -2197 3949 3852 855 292 25 59 chr4 75493744 75494183 -108794479 - LTR16A LTR ERVL 0 450 27 245 348 88 28 chr4 75494221 75494540 -108794122 + L2 LINE L2 2156 2493 -821 869 227 147 14 chr4 75494816 75495102 -108793560 - MER74A LTR ERVL -234 324 1 1475 216 169 24 chr4 75495199 75495667 -108792995 - LTR10A LTR ERV1 -61 548 13 2888 16 0 0 chr4 75495762 75496077 -108792585 - AluYb8 SINE Alu -3 315 1 816 313 112 24 chr4 75496110 75496717 -108791945 + L2 LINE L2 2368 3028 -285 787 137 89 6 chr4 75496807 75496957 -108791705 - MSTA-int LTR MaLR -175 1472 1253 553 246 34 0 chr4 75497525 75497643 -108791019 + FLAM_C SINE Alu 4 125 -8 1071 141 0 0 chr4 75497666 75497822 -108790840 - MSTA LTR MaLR 0 428 273 4541 188 12 4 chr4 75497857 75498693 -108789969 - MSTA-int LTR MaLR -808 843 1 2442 155 14 28 chr4 75498693 75499125 -108789537 - MSTA LTR MaLR 0 428 3 941 185 0 0 chr4 75499128 75499290 -108789372 + FRAM SINE Alu 3 164 -12 22 56 0 0 chr4 75499627 75499663 -108788999 + AT_rich Low_complexity Low_complexity 1 36 0 5310 144 16 6 chr4 75499746 75501264 -108787398 + L1PA15 LINE L1 4626 6165 0 194 387 40 13 chr4 75502069 75502219 -108786443 + L2 LINE L2 1821 1974 -1340 193 351 53 33 chr4 75503263 75503414 -108785248 + L2 LINE L2 1821 1974 -1340 288 244 18 0 chr4 75504560 75504782 -108783880 + (TA)n Simple_repeat Simple_repeat 1 226 0 200 315 67 34 chr4 75506173 75506262 -108782400 - L2 LINE L2 -256 3057 2966 285 298 354 6 chr4 75506691 75506872 -108781790 + MIR SINE MIR 2 245 -17 409 307 86 52 chr4 75507095 75507385 -108781277 - L2 LINE L2 0 3313 3014 378 0 0 0 chr4 75507660 75507702 -108780960 + (TA)n Simple_repeat Simple_repeat 2 43 0 37 0 0 0 chr4 75508014 75508051 -108780611 + AT_rich Low_complexity Low_complexity 1 37 0 21 89 0 0 chr4 75508076 75508132 -108780530 + AT_rich Low_complexity Low_complexity 1 56 0 316 186 16 39 chr4 75508167 75508296 -108780366 + (TA)n Simple_repeat Simple_repeat 1 126 0 258 360 44 0 chr4 75509568 75509682 -108778980 + L2 LINE L2 2493 2611 -703 1277 248 3 0 chr4 75510581 75510863 -108777799 - AluJb SINE Alu -29 283 1 389 235 0 31 chr4 75511296 75511394 -108777268 + MIR SINE MIR 72 166 -96 21 0 0 0 chr4 75511436 75511457 -108777205 + AT_rich Low_complexity Low_complexity 1 21 0 672 258 56 26 chr4 75512886 75513119 -108775543 - MIR SINE MIR -10 252 13 2360 131 17 64 chr4 75514441 75514861 -108773801 - LTR32 LTR ERVL -5 466 67 413 324 24 78 chr4 75514938 75515231 -108773431 - L2 LINE L2 -70 3202 2926 1755 145 0 69 chr4 75515496 75515799 -108772863 - AluJb SINE Alu -20 292 11 22 99 0 0 chr4 75515888 75515959 -108772703 + AT_rich Low_complexity Low_complexity 1 71 0 397 284 61 51 chr4 75516658 75516855 -108771807 - L2 LINE L2 -19 3294 3096 871 281 34 66 chr4 75517066 75517504 -108771158 - LTR16A LTR ERVL 0 450 27 299 350 73 28 chr4 75517542 75517831 -108770831 + L2 LINE L2 2156 2457 -857 2861 10 0 0 chr4 75518137 75518479 -108770183 - AluYa5 SINE Alu 0 342 1 1981 108 6 70 chr4 75518481 75518797 -108769865 - AluSx SINE Alu -16 296 1 241 402 67 10 chr4 75518854 75519063 -108769599 + L2 LINE L2 2639 2859 -455 24 67 0 0 chr4 75520373 75520418 -108768244 + AT_rich Low_complexity Low_complexity 1 45 0 22 35 0 0 chr4 75520695 75520724 -108767938 + AT_rich Low_complexity Low_complexity 1 29 0 34 0 0 0 chr4 75520869 75520903 -108767759 + AT_rich Low_complexity Low_complexity 1 34 0 207 0 0 0 chr4 75521933 75521956 -108766706 + (TG)n Simple_repeat Simple_repeat 1 23 0 1839 152 37 67 chr4 75522086 75522487 -108766175 - MLT1B LTR MaLR -1 389 1 24 32 0 0 chr4 75523723 75523754 -108764908 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 75524540 75524561 -108764101 + AT_rich Low_complexity Low_complexity 1 21 0 2122 120 0 0 chr4 75524603 75524934 -108763728 + AluSx SINE Alu 1 331 0 267 295 116 17 chr4 75525487 75525660 -108763002 + HAL1 LINE L1 679 868 -1639 3335 158 34 67 chr4 75525718 75526433 -108762229 - LTR8 LTR ERV1 0 691 1 1977 255 163 21 chr4 75526853 75528029 -108760633 - L2 LINE L2 -3 3310 1964 657 123 39 123 chr4 75529223 75529402 -108759260 - LTR49 LTR ERV1 -420 175 12 324 330 86 4 chr4 75529442 75529659 -108759003 + MLT1J1 LTR MaLR 202 446 -4 200 370 65 28 chr4 75529662 75529770 -108758892 + L2 LINE L2 1126 1237 -2077 4598 130 59 66 chr4 75529776 75530679 -108757983 - MER4D LTR ERV1 -7 896 1 293 321 144 36 chr4 75530679 75530984 -108757678 + L2 LINE L2 1233 1570 -1744 198 382 45 0 chr4 75531010 75531099 -108757563 + L2 LINE L2 3155 3247 -25 239 305 225 32 chr4 75531132 75531808 -108756854 + L2 LINE L2 1614 2419 -895 24 32 0 0 chr4 75532103 75532134 -108756528 + AT_rich Low_complexity Low_complexity 1 31 0 1329 199 133 9 chr4 75532426 75532773 -108755889 - MLT1B LTR MaLR 0 390 1 21 36 0 0 chr4 75533913 75533941 -108754721 + AT_rich Low_complexity Low_complexity 1 28 0 5090 193 76 19 chr4 75535449 75536749 -108751913 - L1 LINE L1 -834 5312 3938 7618 40 1 2 chr4 75537793 75538758 -108749904 - L1PA5 LINE L1 -2242 3904 2941 12050 46 1 0 chr4 75538758 75541017 -108747645 + L1PA5 LINE L1 3895 6152 -2 21 0 0 0 chr4 75541167 75541188 -108747474 + AT_rich Low_complexity Low_complexity 1 21 0 371 262 65 0 chr4 75541409 75541516 -108747146 - MIR SINE MIR -30 232 119 2498 97 20 3 chr4 75541517 75541866 -108746796 + THE1A LTR MaLR 1 355 0 11360 104 2 2 chr4 75541866 75543446 -108745216 + THE1A-int LTR MaLR 1 1580 0 2616 83 11 3 chr4 75543448 75543798 -108744864 + THE1A LTR MaLR 3 355 0 198 370 86 0 chr4 75543801 75543882 -108744780 - MIR SINE MIR -144 118 31 624 312 69 48 chr4 75544653 75545031 -108743631 + L2 LINE L2 2904 3289 -24 24 32 0 0 chr4 75545374 75545405 -108743257 + AT_rich Low_complexity Low_complexity 1 31 0 3457 172 19 23 chr4 75545431 75546157 -108742505 - L1MB2 LINE L1 -1 6170 5448 1471 212 10 20 chr4 75547541 75547838 -108740824 - AluJb SINE Alu -18 294 1 381 296 56 24 chr4 75547979 75548104 -108740558 - MIR SINE MIR -70 192 64 1531 226 118 56 chr4 75548403 75548903 -108739759 - MLT1H LTR MaLR 0 549 19 712 281 87 41 chr4 75549031 75549767 -108738895 - L1ME3A LINE L1 -221 5949 5176 532 183 0 29 chr4 75550095 75550199 -108738463 + AluSc SINE Alu 127 227 -82 892 366 32 11 chr4 75551120 75551582 -108737080 + L3b LINE CR1 1104 1575 -8 1090 335 37 15 chr4 75552403 75552865 -108735797 + L3b LINE CR1 1104 1575 -8 244 337 98 0 chr4 75553197 75553289 -108735373 - MIR SINE MIR -116 146 46 661 270 23 75 chr4 75554401 75554641 -108734021 - MIR SINE MIR -36 226 3 335 208 28 0 chr4 75555662 75555734 -108732928 - L2 LINE L2 -1449 1865 1792 2796 10 0 0 chr4 75556583 75556885 -108731777 - AluYa5 SINE Alu -2 309 8 22 56 0 0 chr4 75557797 75557833 -108730829 + AT_rich Low_complexity Low_complexity 1 36 0 32 26 0 0 chr4 75558594 75558633 -108730029 + AT_rich Low_complexity Low_complexity 1 39 0 4158 107 29 3 chr4 75559121 75559740 -108728922 - MER41B LTR ERV1 0 635 1 261 139 0 0 chr4 75560049 75560092 -108728570 + (TATATG)n Simple_repeat Simple_repeat 6 48 0 775 181 14 119 chr4 75560138 75560348 -108728314 + MLT1A1 LTR MaLR 171 365 0 276 149 0 0 chr4 75560538 75560585 -108728077 + (TATATG)n Simple_repeat Simple_repeat 4 50 0 2733 202 23 28 chr4 75560635 75561278 -108727384 - L1MA7 LINE L1 -11 6280 5641 4140 154 24 17 chr4 75561279 75561985 -108726677 - MER50 LTR ERV1 -23 711 1 1972 137 41 23 chr4 75561985 75562127 -108726535 - L1MA7 LINE L1 -647 5644 5506 3354 134 53 3 chr4 75562127 75562692 -108725970 - LTR49 LTR ERV1 -2 593 1 1972 137 41 23 chr4 75562692 75563019 -108725643 - L1MA7 LINE L1 -785 5506 5169 23 0 0 0 chr4 75564635 75564658 -108724004 + AT_rich Low_complexity Low_complexity 1 23 0 1611 124 37 121 chr4 75565076 75565455 -108723207 - MER7A DNA MER2_type -1 345 1 337 143 0 0 chr4 75565652 75565701 -108722961 + MER53 DNA DNA 1 49 -140 737 138 8 10 chr4 75567344 75567468 -108721194 + MSTD LTR MaLR 1 108 -288 353 301 40 51 chr4 75568795 75568971 -108719691 + MER5A DNA MER1_type 5 189 0 357 320 33 0 chr4 75568972 75569094 -108719568 + MIR SINE MIR 11 136 -126 26 64 0 0 chr4 75569870 75569917 -108718745 + AT_rich Low_complexity Low_complexity 1 47 0 2947 6 0 0 chr4 75569917 75570235 -108718427 - AluYb8 SINE Alu 0 318 1 5302 128 21 18 chr4 75570611 75571882 -108716780 + L1PA13 LINE L1 4920 6163 0 27 0 0 0 chr4 75573387 75573414 -108715248 + AT_rich Low_complexity Low_complexity 1 27 0 22 88 0 0 chr4 75573434 75573491 -108715171 + AT_rich Low_complexity Low_complexity 1 57 0 1321 174 50 3 chr4 75573497 75573795 -108714867 - L1MA7 LINE L1 -7 6284 5973 539 263 21 27 chr4 75574007 75574193 -108714469 - MIR SINE MIR -50 212 28 318 303 98 79 chr4 75574614 75575043 -108713619 + L1M2 LINE L1 581 1017 -5832 255 290 65 33 chr4 75577274 75577519 -108711143 - L1 LINE L1 -1881 4265 4013 414 293 17 0 chr4 75578343 75578459 -108710203 - MIR SINE MIR -120 142 25 2638 149 45 2 chr4 75578515 75578999 -108709663 - L1MA9 LINE L1 -7 6305 5801 234 300 0 0 chr4 75579021 75579111 -108709551 + L1MC4 LINE L1 6614 6703 -1339 282 160 0 0 chr4 75579112 75579162 -108709500 + (TA)n Simple_repeat Simple_repeat 1 50 0 253 311 0 0 chr4 75579163 75579253 -108709409 + L1MC4 LINE L1 6614 6703 -1339 * 256 289 0 0 chr4 75579213 75579303 -108709359 - L1MC4 LINE L1 -1339 6703 6614 253 253 23 0 chr4 75579262 75579349 -108709313 + L1MC4 LINE L1 6615 6703 -1339 * 264 200 0 0 chr4 75579349 75579404 -108709258 + (TATATG)n Simple_repeat Simple_repeat 1 55 0 283 247 47 0 chr4 75579404 75579489 -108709173 + L1MC4 LINE L1 6615 6703 -1339 516 220 0 0 chr4 75579490 75579608 -108709054 + (TA)n Simple_repeat Simple_repeat 1 118 0 2560 128 18 0 chr4 75579617 75580017 -108708645 - L1M2 LINE L1 -524 5788 5382 1056 182 99 0 chr4 75580018 75580210 -108708452 + Tigger3b DNA MER2_type 1 211 -1020 856 181 13 7 chr4 75580214 75580369 -108708293 + AluJo SINE Alu 3 158 -154 2778 108 2 114 chr4 75580370 75580898 -108707764 + THE1C-int LTR MaLR 1112 1580 0 2377 138 3 16 chr4 75580901 75581278 -108707384 + THE1C LTR MaLR 4 375 0 2386 127 18 32 chr4 75581301 75581743 -108706919 + Tigger3b DNA MER2_type 198 633 -598 433 282 41 22 chr4 75582345 75582521 -108706141 + MER5A DNA MER1_type 5 189 0 372 311 33 0 chr4 75582522 75582644 -108706018 + MIR SINE MIR 11 136 -126 422 198 0 12 chr4 75582984 75583065 -108705597 - MER103 DNA DNA -86 80 1 213 39 0 0 chr4 75583079 75583105 -108705557 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 22 0 0 0 chr4 75583166 75583188 -108705474 + AT_rich Low_complexity Low_complexity 1 22 0 2055 109 6 45 chr4 75584344 75584657 -108704005 - AluSg SINE Alu -9 301 1 503 255 6 38 chr4 75585948 75586105 -108702557 - L2 LINE L2 0 3313 3162 * 1283 253 133 46 chr4 75586101 75586643 -108702019 + L2 LINE L2 1917 2505 -809 851 254 66 64 chr4 75586628 75587037 -108701625 + L2 LINE L2 2828 3237 -76 * 599 216 4 8 chr4 75587147 75587386 -108701276 + CT-rich Low_complexity Low_complexity 1 238 0 2266 98 0 3 chr4 75587973 75588269 -108700393 - AluSg SINE Alu -15 295 1 2280 73 35 0 chr4 75588352 75588640 -108700022 - AluY SINE Alu -13 298 1 270 217 0 0 chr4 75589826 75589872 -108698790 - L2 LINE L2 -5 3267 3222 24 77 0 0 chr4 75589890 75589942 -108698720 + AT_rich Low_complexity Low_complexity 1 52 0 380 283 20 0 chr4 75590103 75590202 -108698460 + MLT1J LTR MaLR 29 129 -382 709 335 42 40 chr4 75591921 75592117 -108696545 + MLT1J LTR MaLR 1 195 -316 2454 62 0 13 chr4 75592117 75592421 -108696241 - AluY SINE Alu -11 300 1 709 335 42 40 chr4 75592421 75592696 -108695966 + MLT1J LTR MaLR 195 473 -38 1626 212 98 29 chr4 75593109 75593591 -108695071 - LTR40a LTR ERVL -2 517 3 913 270 68 61 chr4 75593771 75594200 -108694462 - L2 LINE L2 -6 3307 2876 25680 113 11 27 chr4 75595073 75600066 -108688596 + L1P3 LINE L1 8 5023 -1438 667 264 41 12 chr4 75600789 75600961 -108687701 + MER45A DNA AcHobo 1 177 -1 611 241 53 41 chr4 75601106 75601470 -108687192 + LTR16A1 LTR ERVL 3 440 -17 574 301 117 25 chr4 75601912 75602151 -108686511 + MIR SINE MIR 2 262 0 282 56 0 0 chr4 75603055 75603091 -108685571 + (TG)n Simple_repeat Simple_repeat 2 37 0 242 200 50 17 chr4 75603442 75603502 -108685160 + MIR SINE MIR 31 92 -170 22 0 0 0 chr4 75603740 75603762 -108684900 + AT_rich Low_complexity Low_complexity 1 22 0 308 317 67 0 chr4 75603925 75604045 -108684617 - MER94 DNA DNA -6 128 1 287 309 0 0 chr4 75604458 75604526 -108684136 + L2 LINE L2 3246 3313 0 23 68 0 0 chr4 75604552 75604596 -108684066 + AT_rich Low_complexity Low_complexity 1 44 0 231 61 0 0 chr4 75604912 75604945 -108683717 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2239 121 0 0 chr4 75606847 75607154 -108681508 - AluSq SINE Alu -6 307 1 2454 168 22 5 chr4 75607154 75607564 -108681098 - MSTB LTR MaLR -9 417 1 442 240 10 10 chr4 75607773 75607877 -108680785 + L2 LINE L2 3210 3313 0 * 1021 359 135 27 chr4 75607859 75609369 -108679293 - L2 LINE L2 -1338 1976 304 21 0 0 0 chr4 75609891 75609912 -108678750 + AT_rich Low_complexity Low_complexity 1 21 0 250 304 0 25 chr4 75609912 75609991 -108678671 + L2 LINE L2 3184 3260 -12 324 70 0 0 chr4 75610012 75610055 -108678607 + (TG)n Simple_repeat Simple_repeat 2 44 0 1919 151 0 0 chr4 75610055 75610340 -108678322 - AluSx SINE Alu -27 285 1 512 331 59 59 chr4 75610352 75610775 -108677887 + L3 LINE CR1 682 1104 -473 5130 190 24 27 chr4 75612169 75614064 -108674598 - L1MB3 LINE L1 0 6183 4292 1504 210 69 2 chr4 75614157 75614589 -108674073 + MLT2B1 LTR ERVL 1 514 -6 211 333 67 0 chr4 75614760 75614835 -108673827 - L2 LINE L2 -1120 2194 2115 243 382 34 11 chr4 75614850 75615028 -108673634 + L2 LINE L2 2043 2224 -1090 751 256 78 26 chr4 75615054 75615245 -108673417 - MER20 DNA MER1_type 0 219 19 443 273 22 43 chr4 75615250 75615389 -108673273 + L2 LINE L2 2247 2382 -932 2129 248 67 23 chr4 75615459 75616027 -108672635 - MLT1E LTR MaLR 0 593 1 405 347 107 42 chr4 75616039 75616468 -108672194 + L2 LINE L2 2499 2955 -359 348 216 34 11 chr4 75616826 75616914 -108671748 - MLT1E LTR MaLR -62 531 442 22 35 0 0 chr4 75617430 75617459 -108671203 + AT_rich Low_complexity Low_complexity 1 29 0 318 301 147 13 chr4 75617693 75617849 -108670813 + MIR SINE MIR 76 252 -10 22 0 0 0 chr4 75618014 75618036 -108670626 + AT_rich Low_complexity Low_complexity 1 22 0 236 335 74 63 chr4 75618168 75618437 -108670225 + L2 LINE L2 2692 2963 -351 356 326 99 17 chr4 75621227 75621408 -108667254 - L2 LINE L2 0 3313 3118 1091 303 58 51 chr4 75621592 75622041 -108666621 - L2 LINE L2 -423 2891 2440 444 313 26 67 chr4 75622332 75622498 -108666164 + MLT1J LTR MaLR 5 157 -354 2313 94 0 7 chr4 75622498 75622806 -108665856 - AluSp SINE Alu -7 306 1 444 313 26 67 chr4 75622806 75622907 -108665755 + MLT1J LTR MaLR 157 261 -250 374 252 48 109 chr4 75623255 75623465 -108665197 + MIR SINE MIR 66 262 0 1616 288 95 48 chr4 75623948 75624873 -108663789 - L2 LINE L2 -350 2964 1996 218 226 43 129 chr4 75625026 75625119 -108663543 + L2 LINE L2 15 99 -3215 235 207 72 22 chr4 75625165 75625286 -108663376 - LTR48 LTR ERV1 -49 737 466 2082 274 186 18 chr4 75625551 75625835 -108662827 + L2 LINE L2 94 329 -2985 372 94 0 0 chr4 75625835 75625888 -108662774 + (TG)n Simple_repeat Simple_repeat 2 54 0 2082 274 186 18 chr4 75625888 75625962 -108662700 + L2 LINE L2 329 389 -2925 1641 179 7 36 chr4 75625962 75626264 -108662398 - AluJo SINE Alu -19 293 1 2082 274 186 18 chr4 75626264 75626946 -108661716 + L2 LINE L2 389 1310 -2004 1162 212 156 24 chr4 75626947 75627479 -108661183 - Charlie2 DNA MER1_type -9 2853 2252 22 35 0 0 chr4 75627947 75627976 -108660686 + AT_rich Low_complexity Low_complexity 1 29 0 1462 231 12 29 chr4 75629144 75629486 -108659176 - MER93a LTR ERV1 0 402 67 22 0 0 0 chr4 75629758 75629780 -108658882 + AT_rich Low_complexity Low_complexity 1 22 0 558 253 29 53 chr4 75630487 75630657 -108658005 - MIR3 SINE MIR -13 195 30 245 234 108 45 chr4 75631536 75631647 -108657015 - MIR SINE MIR -16 246 129 1062 218 40 54 chr4 75631823 75632269 -108656393 + MLT1D LTR MaLR 1 503 -2 239 293 66 50 chr4 75633723 75633921 -108654741 + L1MC5 LINE L1 7028 7228 -733 225 317 145 7 chr4 75633928 75634073 -108654589 + L1MC4a LINE L1 7230 7394 -414 211 167 30 0 chr4 75634123 75634189 -108654473 + (TA)n Simple_repeat Simple_repeat 1 68 0 249 265 81 74 chr4 75634212 75634631 -108654031 + L1MC5 LINE L1 7398 7819 -142 697 197 0 0 chr4 75634870 75634997 -108653665 - FLAM_A SINE Alu -6 127 1 215 321 48 0 chr4 75637281 75637365 -108651297 - L2 LINE L2 0 3313 3226 2256 93 0 10 chr4 75637378 75637679 -108650983 - AluY SINE Alu -13 298 1 277 328 41 8 chr4 75639356 75639478 -108649184 + L2 LINE L2 3184 3309 -4 4543 121 43 27 chr4 75640507 75641274 -108647388 + MER4E LTR ERV1 1 779 0 192 405 0 0 chr4 75692920 75692994 -108595668 + L2 LINE L2 3237 3310 -3 580 237 7 15 chr4 75693067 75693202 -108595460 + MER74A LTR ERVL 14 147 -411 905 228 104 5 chr4 75693231 75693433 -108595229 - MLT1A1 LTR MaLR -143 222 1 405 274 152 37 chr4 75693433 75693703 -108594959 - L2 LINE L2 -71 3242 2942 26 0 0 0 chr4 75694944 75694970 -108593692 + AT_rich Low_complexity Low_complexity 1 26 0 245 244 84 17 chr4 75695385 75695504 -108593158 - L1M4 LINE L1 -1749 4397 4271 440 278 116 42 chr4 75695869 75696085 -108592577 - LTR33 LTR ERVL -2 519 288 6899 65 0 6 chr4 75697045 75698392 -108590270 + L1PA6 LINE L1 4812 6154 0 281 118 59 0 chr4 75698424 75698475 -108590187 + L1P LINE L1 3205 3258 -2888 3957 167 9 92 chr4 75698481 75698923 -108589739 + L1 LINE L1 3943 4261 -1885 1793 152 40 13 chr4 75698923 75699226 -108589436 + AluSx SINE Alu 1 311 -1 3957 167 9 92 chr4 75699226 75699764 -108588898 + L1 LINE L1 4261 4842 -1304 5486 170 29 39 chr4 75701859 75702122 -108586540 + L1MA4 LINE L1 4128 4392 -1908 1852 142 40 13 chr4 75702122 75702425 -108586237 + AluSx SINE Alu 1 311 -1 5486 170 29 39 chr4 75702425 75704377 -108584285 + L1MA4 LINE L1 4392 6300 0 3388 82 6 0 chr4 75704658 75705232 -108583430 - L1P3 LINE L1 -437 6032 5456 634 62 0 0 chr4 75705232 75705312 -108583350 + L1P3 LINE L1 335 414 -6047 6988 103 23 0 chr4 75705314 75706276 -108582386 - L1P3 LINE L1 -5476 985 2 2316 174 26 0 chr4 75706762 75707142 -108581520 + MSTA LTR MaLR 1 390 -38 2983 50 5 25 chr4 75708093 75708495 -108580167 + L1PA7 LINE L1 5761 6154 0 21 0 0 0 chr4 75708540 75708561 -108580101 + AT_rich Low_complexity Low_complexity 1 21 0 7041 111 17 15 chr4 75709209 75710276 -108578386 - MER11C LTR ERVK -2 1069 1 2157 139 0 0 chr4 75710276 75710578 -108578084 - AluSx SINE Alu -10 302 1 209 317 99 43 chr4 75710859 75711020 -108577642 + L2 LINE L2 2330 2499 -815 250 215 137 91 chr4 75711340 75711559 -108577103 - L1MC5 LINE L1 -473 7488 7260 465 263 41 14 chr4 75711635 75711849 -108576813 - L1MC4 LINE L1 -728 7233 7037 552 274 70 25 chr4 75711893 75712207 -108576455 - L1ME LINE L1 -577 5585 5258 5911 93 1 4 chr4 75713053 75713898 -108574764 + L1P LINE L1 3816 4658 -1488 37246 91 7 13 chr4 75713998 75719372 -108569290 - L1P LINE L1 -799 5347 11 3068 184 23 12 chr4 75719391 75720056 -108568606 - L1 LINE L1 -2228 3918 3247 22 0 0 0 chr4 75720891 75720913 -108567749 + AT_rich Low_complexity Low_complexity 1 22 0 309 283 114 54 chr4 75721007 75721191 -108567471 - MIR3 SINE MIR -9 199 5 1530 201 23 30 chr4 75721769 75722121 -108566541 - MLT1A2 LTR MaLR 0 505 29 624 218 5 124 chr4 75722390 75722509 -108566153 - MER45A DNA AcHobo -1403 178 91 1528 139 20 41 chr4 75722509 75722629 -108566033 + L1MB3 LINE L1 5894 6015 -168 2251 111 3 0 chr4 75722629 75722935 -108565727 - AluSq SINE Alu -6 307 1 1528 139 20 41 chr4 75722935 75723108 -108565554 + L1MB3 LINE L1 6015 6181 -2 624 218 5 124 chr4 75723108 75723190 -108565472 - MER45A DNA AcHobo -1490 91 1 2216 119 0 0 chr4 75724168 75724462 -108564200 - AluSg SINE Alu -12 298 5 2186 122 0 0 chr4 75725447 75725750 -108562912 + AluSc SINE Alu 1 303 -6 396 233 0 92 chr4 75725770 75725890 -108562772 - L2 LINE L2 -19 3294 3186 * 1650 246 80 66 chr4 75725884 75725978 -108562684 - L2 LINE L2 -1197 2117 2026 926 121 0 0 chr4 75725978 75726110 -108562552 + FLAM_C SINE Alu 1 132 -1 1650 246 80 66 chr4 75726110 75726756 -108561906 - L2 LINE L2 -1288 2026 1367 272 303 18 48 chr4 75726964 75727129 -108561533 + L1MC4a LINE L1 5742 5901 -1907 276 250 120 19 chr4 75727854 75727962 -108560700 + L2 LINE L2 1913 2031 -1283 294 322 139 17 chr4 75727982 75728212 -108560450 + L2 LINE L2 2234 2491 -823 22 0 0 0 chr4 75728799 75728821 -108559841 + AT_rich Low_complexity Low_complexity 1 22 0 202 364 67 26 chr4 75729945 75730140 -108558522 + L3 LINE CR1 191 393 -1184 1014 334 75 13 chr4 75730290 75730754 -108557908 + L3 LINE CR1 1028 1520 -57 5090 169 48 14 chr4 75730853 75732399 -108556263 + L1MA8 LINE L1 4681 6279 -12 816 184 48 58 chr4 75732444 75732650 -108556012 + Tigger3(Golem) DNA MER2_type 1 204 -2825 * 3492 125 55 15 chr4 75732639 75733289 -108555373 + Tigger3(Golem) DNA MER2_type 2354 3029 0 1520 213 36 63 chr4 75733660 75734102 -108554560 - MER74B LTR ERVL 0 622 193 331 151 0 0 chr4 75734163 75734216 -108554446 - MER74B LTR ERVL -569 53 1 * 557 340 82 45 chr4 75734216 75734678 -108553984 + LTR67 LTR ERVL 71 549 -8 228 252 170 30 chr4 75736119 75736254 -108552408 - L2 LINE L2 -47 3266 3113 21 0 0 0 chr4 75736410 75736431 -108552231 + AT_rich Low_complexity Low_complexity 1 21 0 1023 240 4 38 chr4 75736494 75736762 -108551900 + MLT2B3 LTR ERVL 216 367 -86 784 317 4 13 chr4 75736774 75737001 -108551661 + L1PA16 LINE L1 2 226 -6561 398 306 19 19 chr4 75736996 75737156 -108551506 + L1PA16 LINE L1 453 612 -6175 * 7728 270 64 33 chr4 75737310 75740702 -108547960 + L1PA16 LINE L1 1245 4767 -2030 5196 152 9 13 chr4 75740734 75740999 -108547663 + L1PA16 LINE L1 4921 5186 -1631 2080 171 81 2 chr4 75740999 75741396 -108547266 + MSTA LTR MaLR 1 428 0 5196 152 9 13 chr4 75741396 75743020 -108545642 + L1PA16 LINE L1 5186 6802 -15 333 359 38 19 chr4 75743347 75743559 -108545103 - L2 LINE L2 -218 3054 2839 10548 103 1 3 chr4 75744105 75746441 -108542221 + L1PA7 LINE L1 3816 6146 -8 22 0 0 0 chr4 75747725 75747747 -108540915 + AT_rich Low_complexity Low_complexity 1 22 0 948 213 52 87 chr4 75747759 75748045 -108540617 + AluJo SINE Alu 1 276 -36 277 274 84 21 chr4 75749029 75749124 -108539538 - Charlie7 DNA MER1_type -2511 101 1 198 357 157 29 chr4 75749382 75749592 -108539070 - L2 LINE L2 -833 2481 2245 28 61 0 0 chr4 75750336 75750385 -108538277 + AT_rich Low_complexity Low_complexity 1 49 0 366 42 0 0 chr4 75750922 75750970 -108537692 + (CA)n Simple_repeat Simple_repeat 1 48 0 1741 182 7 3 chr4 75751012 75751437 -108537225 + AluJo SINE Alu 3 428 0 23 101 0 0 chr4 75751575 75751654 -108537008 + AT_rich Low_complexity Low_complexity 1 79 0 1483 106 5 0 chr4 75751654 75751871 -108536791 - L1PB1 LINE L1 0 6151 5934 21 71 0 0 chr4 75751876 75751918 -108536744 + AT_rich Low_complexity Low_complexity 1 42 0 41 48 0 0 chr4 75752391 75752453 -108536209 + AT_rich Low_complexity Low_complexity 1 62 0 29 60 0 0 chr4 75753083 75753133 -108535529 + AT_rich Low_complexity Low_complexity 1 50 0 1657 145 60 7 chr4 75754601 75754883 -108533779 - AluSx SINE Alu -15 297 1 22 35 0 0 chr4 75754949 75754978 -108533684 + AT_rich Low_complexity Low_complexity 1 29 0 214 337 24 0 chr4 75755413 75755496 -108533166 - L2 LINE L2 0 3272 3188 270 0 0 0 chr4 75755656 75755686 -108532976 + (CA)n Simple_repeat Simple_repeat 2 31 0 189 0 0 0 chr4 75755685 75755706 -108532956 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 224 186 0 57 chr4 75755876 75755946 -108532716 + GA-rich Low_complexity Low_complexity 4 69 0 207 139 0 0 chr4 75757109 75757145 -108531517 + (TG)n Simple_repeat Simple_repeat 1 36 0 241 341 0 0 chr4 75757248 75757336 -108531326 - MIR SINE MIR -74 188 101 301 339 135 13 chr4 75757426 75757656 -108531006 - L2 LINE L2 -823 2491 2234 236 235 112 31 chr4 75757676 75757774 -108530888 - L2 LINE L2 -1283 2031 1926 258 315 125 22 chr4 75758248 75758432 -108530230 - L2 LINE L2 -609 2705 2503 487 252 17 0 chr4 75758556 75758675 -108529987 + MER103 DNA DNA 3 123 -43 22 0 0 0 chr4 75758919 75758941 -108529721 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr4 75759129 75759157 -108529505 + AT_rich Low_complexity Low_complexity 1 28 0 229 250 132 0 chr4 75759247 75759323 -108529339 - L2 LINE L2 0 3272 3187 342 67 0 0 chr4 75759816 75759861 -108528801 + (CA)n Simple_repeat Simple_repeat 2 46 0 2149 95 7 10 chr4 75760808 75761102 -108527560 - AluSc SINE Alu -16 293 1 1451 224 7 7 chr4 75761749 75762035 -108526627 - AluJo SINE Alu -20 292 7 10474 188 10 5 chr4 75762055 75764938 -108523724 - L1PA14 LINE L1 0 6161 3260 15566 118 31 21 chr4 75764939 75767555 -108521107 - LOR1-int LTR ERV1 -2729 5391 2750 349 321 38 34 chr4 75767604 75767869 -108520793 + L1ME3A LINE L1 3482 3747 -2399 251 325 32 8 chr4 75767882 75768005 -108520657 + L1ME3A LINE L1 3777 3902 -2244 512 250 204 74 chr4 75768005 75768357 -108520305 - MLT1G1 LTR MaLR 0 595 158 13593 176 29 4 chr4 75768456 75770891 -108517771 + L1M1 LINE L1 17 2511 -5054 2813 113 40 4 chr4 75770890 75771366 -108517296 + L1M1 LINE L1 3076 3568 -3997 * 1110 149 0 6 chr4 75771366 75771540 -108517122 + AluSq SINE Alu 1 173 -140 718 164 0 0 chr4 75771599 75771756 -108516906 + AluSg/x SINE Alu 173 329 0 10510 204 22 3 chr4 75771756 75774045 -108514617 + L1M1 LINE L1 3563 5894 -1671 1039 301 53 7 chr4 75774026 75774462 -108514200 + L1MC4a LINE L1 5474 5929 -1879 * 303 299 163 71 chr4 75774520 75774944 -108513718 + L1MC4a LINE L1 6047 6509 -1299 399 339 74 32 chr4 75774972 75775255 -108513407 + LTR16B LTR ERVL 39 333 -131 189 74 0 0 chr4 75776776 75776803 -108511859 + (TA)n Simple_repeat Simple_repeat 1 27 0 25 31 0 0 chr4 75776923 75776955 -108511707 + AT_rich Low_complexity Low_complexity 1 32 0 26 30 0 0 chr4 75777022 75777055 -108511607 + AT_rich Low_complexity Low_complexity 1 33 0 598 262 101 35 chr4 75778135 75778562 -108510100 + L1ME3A LINE L1 4414 4868 -1278 1064 254 133 24 chr4 75778736 75779415 -108509247 + L1ME3A LINE L1 5197 5950 -220 21 0 0 0 chr4 75779643 75779664 -108508998 + AT_rich Low_complexity Low_complexity 1 21 0 1261 216 44 30 chr4 75779983 75780349 -108508313 + MLT1A2 LTR MaLR 4 374 0 1296 103 115 46 chr4 75780448 75780709 -108507953 - L1MA3 LINE L1 0 6305 6027 10573 177 16 58 chr4 75780810 75781033 -108507629 - L1MA3 LINE L1 -259 6046 5815 1823 161 0 10 chr4 75781033 75781344 -108507318 - AluSg SINE Alu -2 308 1 10573 177 16 58 chr4 75781344 75783860 -108504802 - L1MA3 LINE L1 -490 5815 3197 897 196 0 0 chr4 75783860 75784023 -108504639 - AluJb SINE Alu -17 295 133 10573 177 16 58 chr4 75784023 75784390 -108504272 - L1MA3 LINE L1 -3108 3197 2816 2775 39 3 0 chr4 75784390 75784727 -108503935 + L1PA5 LINE L1 5817 6154 0 189 0 0 0 chr4 75784727 75784748 -108503914 + (TA)n Simple_repeat Simple_repeat 2 22 0 10573 177 16 58 chr4 75784748 75784793 -108503869 - L1MA3 LINE L1 -3384 2921 2876 2293 102 0 0 chr4 75785927 75786230 -108502432 - AluSc SINE Alu -6 303 1 183 329 24 94 chr4 75786629 75786714 -108501948 - L2 LINE L2 -62 3210 3132 1172 241 104 27 chr4 75787532 75787976 -108500686 - MLT1J LTR MaLR -1 510 33 248 257 14 14 chr4 75788572 75788642 -108500020 - LTR67 LTR ERVL 0 557 488 1079 289 60 9 chr4 75789283 75789598 -108499064 + MLT1I LTR MaLR 63 393 -16 331 67 17 17 chr4 75789959 75790019 -108498643 + (TA)n Simple_repeat Simple_repeat 2 61 0 313 391 56 19 chr4 75790181 75790396 -108498266 + L2 LINE L2 2521 2743 -571 326 321 90 30 chr4 75790840 75790974 -108497688 + L2 LINE L2 3123 3264 -8 270 287 106 58 chr4 75793315 75793503 -108495159 - L2 LINE L2 0 3313 3117 328 301 54 60 chr4 75794546 75794712 -108493950 + MIR SINE MIR 3 167 -95 22 56 0 0 chr4 75794713 75794749 -108493913 + AT_rich Low_complexity Low_complexity 1 36 0 30 0 0 0 chr4 75794774 75794804 -108493858 + AT_rich Low_complexity Low_complexity 1 30 0 330 345 82 15 chr4 75795913 75796119 -108492543 + MIR SINE MIR 20 239 -23 1593 177 4 0 chr4 75796120 75796391 -108492271 - AluJb SINE Alu -10 302 31 1060 292 61 36 chr4 75796438 75796880 -108491782 - LTR16A1 LTR ERVL -4 453 1 979 276 24 4 chr4 75797305 75797551 -108491111 - MIR SINE MIR -3 259 9 482 249 243 6 chr4 75797678 75797847 -108490815 - MIR SINE MIR -41 221 13 456 288 123 42 chr4 75797915 75798699 -108489963 + L1ME3A LINE L1 5044 5881 -289 444 258 58 8 chr4 75798763 75798883 -108489779 + MIR SINE MIR 108 233 -29 2153 101 3 7 chr4 75798887 75799184 -108489478 + AluSg SINE Alu 1 296 -14 2423 8 0 0 chr4 75799642 75799910 -108488752 - AluYa5 SINE Alu 0 311 44 1436 236 95 4 chr4 75802020 75802524 -108486138 - L1M4 LINE L1 -2759 3387 2838 1911 144 46 27 chr4 75802632 75803000 -108485662 - THE1C LTR MaLR 0 375 1 197 65 32 0 chr4 75803196 75803227 -108485435 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 388 288 40 40 chr4 75803236 75803413 -108485249 - HAL1 LINE L1 -1556 951 775 260 143 0 0 chr4 75803873 75803929 -108484733 - L1M4 LINE L1 -1095 5051 4996 224 185 0 46 chr4 75804604 75804669 -108483993 + GA-rich Low_complexity Low_complexity 3 64 0 563 340 161 33 chr4 75804699 75805122 -108483540 - L3 LINE CR1 -4 1573 1097 2257 281 69 15 chr4 75805125 75806048 -108482614 - L1ME3A LINE L1 -7 6163 5184 447 261 5 65 chr4 75806049 75806229 -108482433 - L1ME3A LINE L1 -981 5165 4998 1914 152 3 0 chr4 75806229 75806518 -108482144 - AluSx SINE Alu -19 293 4 447 261 5 65 chr4 75806518 75806552 -108482110 - L1ME3A LINE L1 -1148 4998 4964 700 294 78 0 chr4 75806556 75806760 -108481902 - L2 LINE L2 -979 2335 2116 464 330 115 65 chr4 75806814 75807381 -108481281 - L3 LINE CR1 -523 1054 460 180 0 0 0 chr4 75809222 75809242 -108479420 + (TTG)n Simple_repeat Simple_repeat 2 21 0 504 389 20 0 chr4 75809328 75809572 -108479090 + MIR SINE MIR 14 262 0 209 315 123 0 chr4 75809640 75809713 -108478949 - MIR3 SINE MIR -29 179 98 2694 109 45 2 chr4 75810321 75810725 -108477937 + L1PA13 LINE L1 5701 6121 -42 1473 167 3 7 chr4 75810826 75811114 -108477548 - L1 LINE L1 -3089 3057 2771 719 282 29 10 chr4 75812191 75812400 -108476262 - MIR SINE MIR 0 262 50 3062 233 50 55 chr4 75812533 75813749 -108474913 - L1MD2 LINE L1 -15 6738 5529 443 263 63 34 chr4 75813749 75813924 -108474738 - L1MD2 LINE L1 -6343 197 18 21 0 0 0 chr4 75814185 75814206 -108474456 + AT_rich Low_complexity Low_complexity 1 21 0 272 289 141 26 chr4 75816301 75816457 -108472205 - MIR SINE MIR -5 257 84 * 607 346 106 17 chr4 75816444 75816848 -108471814 - L3 LINE CR1 -662 915 476 188 300 20 0 chr4 75817602 75817652 -108471010 + L2 LINE L2 3219 3269 -3 2171 67 3 18 chr4 75818071 75818356 -108470306 - AluY SINE Alu -30 281 1 354 348 0 9 chr4 75821112 75821227 -108467435 - MIR3 SINE MIR -3 205 92 38566 41 26 2 chr4 75821463 75826299 -108462363 + L1P LINE L1 1 4956 -1190 190 262 0 0 chr4 75826417 75826459 -108462203 - MIR SINE MIR -61 147 106 2884 107 40 5 chr4 75827073 75827520 -108461142 + L1PA13 LINE L1 5701 6163 0 22 0 0 0 chr4 75827668 75827690 -108460972 + AT_rich Low_complexity Low_complexity 1 22 0 194 208 19 0 chr4 75828668 75828721 -108459941 + (TA)n Simple_repeat Simple_repeat 2 55 0 375 329 51 17 chr4 75828817 75829054 -108459608 + L1ME LINE L1 5572 5816 -305 379 239 11 0 chr4 75831015 75831107 -108457555 - L1MC4 LINE L1 0 8042 7950 2079 103 3 14 chr4 75831542 75831833 -108456829 + AluSg SINE Alu 1 288 -22 421 270 20 34 chr4 75831937 75832085 -108456577 - L1MC4a LINE L1 -1892 5916 5771 197 132 26 0 chr4 75832286 75832324 -108456338 + GA-rich Low_complexity Low_complexity 2 40 0 22 0 0 0 chr4 75832498 75832520 -108456142 + AT_rich Low_complexity Low_complexity 1 22 0 263 305 9 9 chr4 75832696 75832801 -108455861 + GA-rich Low_complexity Low_complexity 1 105 0 222 258 16 0 chr4 75833361 75833423 -108455239 + (TA)n Simple_repeat Simple_repeat 1 63 0 285 29 0 0 chr4 75834149 75834183 -108454479 + (TG)n Simple_repeat Simple_repeat 1 34 0 22 35 0 0 chr4 75834814 75834843 -108453819 + AT_rich Low_complexity Low_complexity 1 29 0 210 267 33 78 chr4 75835218 75835308 -108453354 - L3 LINE CR1 -1036 541 456 400 268 140 24 chr4 75838281 75838445 -108450217 - MIR SINE MIR -33 229 47 22 0 0 0 chr4 75840209 75840231 -108448431 + AT_rich Low_complexity Low_complexity 1 22 0 966 169 0 23 chr4 75840817 75840989 -108447673 - FRAM SINE Alu -9 167 1 320 262 28 0 chr4 75841634 75841741 -108446921 + (TA)n Simple_repeat Simple_repeat 1 110 0 608 241 44 6 chr4 75841750 75841908 -108446754 - MIR3 SINE MIR -25 183 20 24 85 0 0 chr4 75842136 75842195 -108446467 + AT_rich Low_complexity Low_complexity 1 59 0 24 32 0 0 chr4 75844108 75844139 -108444523 + AT_rich Low_complexity Low_complexity 1 31 0 275 312 101 37 chr4 75846037 75846226 -108442436 + MIR SINE MIR 21 221 -41 227 310 65 45 chr4 75846642 75846797 -108441865 - L3 LINE CR1 -310 1267 1110 234 324 78 39 chr4 75846864 75846966 -108441696 - L2 LINE L2 -13 3300 3195 23 33 0 0 chr4 75846966 75846996 -108441666 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 75847436 75847464 -108441198 + AT_rich Low_complexity Low_complexity 1 28 0 213 240 0 20 chr4 75847561 75847611 -108441051 - L3 LINE CR1 -486 1091 1043 14360 217 46 22 chr4 75848725 75850555 -108438107 + L1MA8 LINE L1 7 1793 -5458 195 100 0 0 chr4 75850555 75850585 -108438077 + (TG)n Simple_repeat Simple_repeat 2 31 0 14360 217 46 22 chr4 75850585 75852300 -108436362 + L1MA8 LINE L1 1793 3466 -3785 234 0 0 0 chr4 75852300 75852326 -108436336 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 14360 217 46 22 chr4 75852326 75854884 -108433778 + L1MA8 LINE L1 3466 7250 -1 1838 158 36 10 chr4 75854886 75855190 -108433472 + AluSx SINE Alu 1 312 0 334 294 47 58 chr4 75855224 75855500 -108433162 + L1MEd LINE L1 898 1170 -4949 22 0 0 0 chr4 75855791 75855813 -108432849 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 75856353 75856374 -108432288 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 75856517 75856542 -108432120 + AT_rich Low_complexity Low_complexity 1 25 0 1217 174 110 55 chr4 75857275 75857620 -108431042 + MLT1A1 LTR MaLR 2 365 0 22 0 0 0 chr4 75857731 75857753 -108430909 + AT_rich Low_complexity Low_complexity 1 22 0 430 237 23 46 chr4 75857862 75857993 -108430669 - L2 LINE L2 -2 3311 3184 1865 84 28 52 chr4 75858604 75858916 -108429746 + AluSg SINE Alu 1 305 0 2059 102 17 3 chr4 75859424 75859719 -108428943 - AluSg SINE Alu -11 299 1 423 331 94 6 chr4 75859736 75859896 -108428766 + MIR SINE MIR 3 176 -86 247 169 77 46 chr4 75861598 75861663 -108426999 - 7SK RNA RNA -69 124 58 186 333 157 10 chr4 75861941 75862043 -108426619 - MIR3 SINE MIR -15 193 77 861 233 99 0 chr4 75862122 75862324 -108426338 + MER58A DNA MER1_type 1 222 -2 12831 64 8 4 chr4 75862532 75864997 -108423665 + L1PA3 LINE L1 3686 6155 0 1462 182 91 7 chr4 75866965 75867240 -108421422 - AluJb SINE Alu -14 298 1 2140 95 24 3 chr4 75867311 75867607 -108421055 + AluSg SINE Alu 1 302 -8 243 163 25 62 chr4 75867765 75867845 -108420817 + A-rich Low_complexity Low_complexity 4 80 0 310 351 60 35 chr4 75867861 75868201 -108420461 - L2 LINE L2 -113 3200 2799 882 122 0 0 chr4 75868354 75868477 -108420185 + FLAM_C SINE Alu 2 124 -19 239 264 104 28 chr4 75869392 75869498 -108419164 + MIR SINE MIR 40 153 -109 368 220 180 0 chr4 75869591 75869691 -108418971 + L2 LINE L2 3154 3271 -1 190 276 35 17 chr4 75869772 75869830 -108418832 - L2 LINE L2 0 3313 3255 2121 155 19 16 chr4 75869895 75870269 -108418393 - THE1C LTR MaLR 0 375 1 693 267 167 0 chr4 75871436 75871657 -108417005 + MIR SINE MIR 2 259 -3 193 362 43 50 chr4 75871709 75871850 -108416812 - L2 LINE L2 -882 2432 2293 32 0 0 0 chr4 75872058 75872090 -108416572 + AT_rich Low_complexity Low_complexity 1 32 0 349 243 297 16 chr4 75872210 75872395 -108416267 - MIR SINE MIR -24 238 2 26 0 0 0 chr4 75873406 75873432 -108415230 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr4 75875974 75876003 -108412659 + AT_rich Low_complexity Low_complexity 1 29 0 831 273 74 62 chr4 75876428 75876846 -108411816 - MLT1J1 LTR MaLR -3 443 21 220 231 19 0 chr4 75877918 75877970 -108410692 + (TATG)n Simple_repeat Simple_repeat 4 56 0 1626 241 23 18 chr4 75878481 75878867 -108409795 + Cheshire DNA MER1_type 1 388 -2032 456 254 172 0 chr4 75881209 75881343 -108407319 + MIR SINE MIR 1 157 -105 195 258 118 86 chr4 75881646 75881739 -108406923 + MIR3 SINE MIR 9 104 -104 234 91 0 0 chr4 75881759 75881792 -108406870 + (T)n Simple_repeat Simple_repeat 1 33 0 2120 135 116 127 chr4 75882193 75882814 -108405848 + LTR18B LTR ERVL 1 614 0 478 240 23 64 chr4 75882837 75883008 -108405654 - MIR SINE MIR -98 164 1 260 225 127 0 chr4 75884246 75884317 -108404345 - L2 LINE L2 -1 3271 3192 455 270 250 15 chr4 75884840 75885044 -108403618 - MIR SINE MIR -7 255 4 181 325 88 38 chr4 75887570 75887650 -108401012 - MIR SINE MIR -111 151 68 393 322 86 38 chr4 75888311 75888603 -108400059 - L2 LINE L2 -3 3310 3005 235 331 126 0 chr4 75888957 75889084 -108399578 - MIR SINE MIR -16 246 104 7414 23 1 0 chr4 75890095 75890963 -108397699 + L1PA3 LINE L1 5283 6151 -4 21 0 0 0 chr4 75890965 75890986 -108397676 + AT_rich Low_complexity Low_complexity 1 21 0 1485 177 7 3 chr4 75890991 75891291 -108397371 - L1 LINE L1 -2559 3587 3287 240 35 0 0 chr4 75891433 75891462 -108397200 + (TC)n Simple_repeat Simple_repeat 2 30 0 * 444 37 0 0 chr4 75891461 75891515 -108397147 + (TG)n Simple_repeat Simple_repeat 1 54 0 1003 225 59 5 chr4 75891774 75891996 -108396666 + MLT1F1 LTR MaLR 333 566 -1 194 0 39 0 chr4 75892387 75892413 -108396249 + (TTTTA)n Simple_repeat Simple_repeat 1 27 0 317 75 19 0 chr4 75893257 75893310 -108395352 + (CA)n Simple_repeat Simple_repeat 1 54 0 243 235 29 29 chr4 75893985 75894053 -108394609 + MIR SINE MIR 77 144 -64 311 311 66 44 chr4 75896301 75896484 -108392178 - MIR SINE MIR 0 262 76 335 216 9 86 chr4 75896488 75896551 -108392111 - MLT1E3 LTR MaLR 0 624 572 1657 191 7 3 chr4 75896551 75896844 -108391818 - AluJb SINE Alu -16 296 3 335 216 9 86 chr4 75896844 75896896 -108391766 - MLT1E3 LTR MaLR -52 572 518 218 254 68 0 chr4 75897518 75897577 -108391085 - MIR SINE MIR -108 154 92 1442 209 28 39 chr4 75898265 75898623 -108390039 + MLT1A1 LTR MaLR 1 354 -11 522 358 35 13 chr4 75899135 75899364 -108389298 + MIR SINE MIR 28 261 -1 319 245 157 19 chr4 75900981 75901197 -108387465 + HAL1 LINE L1 1096 1341 -1166 207 224 0 20 chr4 75901202 75901251 -108387411 + (TATATG)n Simple_repeat Simple_repeat 6 53 0 227 261 42 84 chr4 75901635 75901777 -108386885 + L1ME4a LINE L1 5882 6017 -104 28 29 0 0 chr4 75901811 75901846 -108386816 + AT_rich Low_complexity Low_complexity 1 35 0 9141 158 17 3 chr4 75902521 75905094 -108383568 - L1MA2 LINE L1 -139 7584 4974 1942 43 0 4 chr4 75905074 75905327 -108383335 - L1P LINE L1 -923 5223 4972 * 16676 162 56 81 chr4 75905427 75908251 -108380411 - L1MA2 LINE L1 -3767 3798 952 931 101 0 14 chr4 75908251 75908390 -108380272 - AluSg/x SINE Alu 0 312 176 16676 162 56 81 chr4 75908390 75909319 -108379343 - L1MA2 LINE L1 -6613 952 1 390 309 56 0 chr4 75909394 75909520 -108379142 - L2 LINE L2 -2 3311 3179 998 82 0 22 chr4 75910129 75910263 -108378399 + AluSq/x SINE Alu 3 133 -180 212 231 31 0 chr4 75910336 75910401 -108378261 + (TA)n Simple_repeat Simple_repeat 1 67 0 1164 46 7 13 chr4 75910710 75910862 -108377800 + L1PA8 LINE L1 6020 6170 -2 332 258 71 39 chr4 75912132 75912287 -108376375 - MIR SINE MIR -6 256 97 2599 84 55 24 chr4 75912584 75912965 -108375697 - MLT2A2 LTR ERVL -60 393 1 197 414 0 0 chr4 75914835 75914922 -108373740 - MIR SINE MIR -150 112 26 386 272 0 0 chr4 75915367 75915470 -108373192 - Charlie5 DNA MER1_type -27 2585 2483 226 178 14 41 chr4 75915487 75915560 -108373102 + (TTATA)n Simple_repeat Simple_repeat 4 74 0 786 198 66 33 chr4 75915570 75915642 -108373020 - L1MB3 LINE L1 -3 6180 6112 1190 158 177 43 chr4 75915642 75915964 -108372698 - MLT1A1 LTR MaLR 0 365 1 786 198 66 33 chr4 75915964 75916103 -108372559 - L1MB3 LINE L1 -71 6112 5962 317 224 172 17 chr4 75916350 75916466 -108372196 + MIR SINE MIR 122 255 -7 1791 61 73 0 chr4 75917149 75917395 -108371267 - AluY SINE Alu -4 307 44 233 304 0 0 chr4 75917397 75917453 -108371209 - MER5A DNA MER1_type -6 183 128 638 256 39 17 chr4 75917562 75917742 -108370920 + MLT1D LTR MaLR 1 184 -321 392 211 81 0 chr4 75917772 75917882 -108370780 + MLT1B LTR MaLR 273 467 0 2081 210 24 33 chr4 75918299 75918809 -108369853 - MLT1D LTR MaLR 0 505 1 29 28 0 0 chr4 75919067 75919103 -108369559 + AT_rich Low_complexity Low_complexity 1 36 0 6578 61 20 5 chr4 75919339 75920803 -108367859 - L1PA7 LINE L1 -13 6141 4652 21 82 0 0 chr4 75921887 75921936 -108366726 + AT_rich Low_complexity Low_complexity 1 49 0 29 28 0 0 chr4 75922427 75922463 -108366199 + AT_rich Low_complexity Low_complexity 1 36 0 282 291 12 35 chr4 75922714 75922800 -108365862 + MER91C DNA MER1_type 51 134 -6 380 309 72 33 chr4 75923311 75923492 -108365170 - MER5A DNA MER1_type -1 188 1 220 276 172 55 chr4 75923509 75923654 -108365008 - MER5B DNA MER1_type -16 162 1 294 327 18 0 chr4 75924008 75924118 -108364544 + MIR SINE MIR 151 262 0 209 331 113 33 chr4 75924421 75924572 -108364090 + L2 LINE L2 2812 2974 -298 4317 184 27 12 chr4 75924898 75925759 -108362903 - L1MB3 LINE L1 -14 6169 5296 1669 158 11 0 chr4 75925859 75926144 -108362518 + L1PA13 LINE L1 5873 6160 -3 574 173 19 0 chr4 75926233 75926337 -108362325 - L1ME LINE L1 -544 5622 5517 276 216 14 0 chr4 75926351 75926425 -108362237 - L1ME LINE L1 -3157 2989 2915 439 200 0 0 chr4 75926436 75926511 -108362151 + LTR32 LTR ERVL 278 352 -119 410 149 0 14 chr4 75926656 75926730 -108361932 + LTR32 LTR ERVL 317 389 -82 1400 305 72 11 chr4 75926751 75927289 -108361373 + L1MEc LINE L1 118 688 -5708 2257 271 79 30 chr4 75927456 75928117 -108360545 + L1MEc LINE L1 706 1446 -4950 1957 164 51 8 chr4 75928117 75928490 -108360172 - MLT1B LTR MaLR 0 390 2 2257 271 79 30 chr4 75928490 75928950 -108359712 + L1MEc LINE L1 1446 1882 -4514 2382 86 3 6 chr4 75928974 75929288 -108359374 + AluSq SINE Alu 1 313 0 1316 202 31 24 chr4 75929290 75929457 -108359205 + L1ME LINE L1 5133 5297 -869 2403 53 7 3 chr4 75929457 75929757 -108358905 + AluY SINE Alu 1 301 -10 1316 202 31 24 chr4 75929757 75930012 -108358650 + L1ME LINE L1 5297 5565 -601 835 121 0 0 chr4 75930112 75930228 -108358434 - AluSq/x SINE Alu -197 116 1 971 295 101 66 chr4 75930232 75931216 -108357446 - HAL1 LINE L1 -1487 1020 3 21 57 0 0 chr4 75931432 75931467 -108357195 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr4 75932272 75932309 -108356353 + AT_rich Low_complexity Low_complexity 1 37 0 411 293 179 14 chr4 75932454 75932666 -108355996 + MIR SINE MIR 14 260 -2 204 40 0 0 chr4 75932685 75932710 -108355952 + (TTA)n Simple_repeat Simple_repeat 1 25 0 29 0 0 0 chr4 75932905 75932934 -108355728 + AT_rich Low_complexity Low_complexity 1 29 0 195 393 35 14 chr4 75933545 75933690 -108354972 + L2 LINE L2 2439 2586 -728 735 234 77 58 chr4 75934275 75934536 -108354126 + MLT1F LTR MaLR 1 266 -276 260 24 0 0 chr4 75934570 75934611 -108354051 - AluY SINE Alu 0 300 260 3776 186 19 11 chr4 75934711 75935625 -108353037 + L1MA9 LINE L1 4612 5538 -743 281 341 32 0 chr4 75935639 75935762 -108352900 + LTR67 LTR ERVL 431 557 0 3559 176 67 11 chr4 75935934 75936535 -108352127 + L1MA9 LINE L1 5525 6177 -135 261 0 0 0 chr4 75936535 75936564 -108352098 + (CA)n Simple_repeat Simple_repeat 1 29 0 3559 176 67 11 chr4 75936564 75936705 -108351957 + L1MA9 LINE L1 6177 6309 -3 21 36 0 0 chr4 75937445 75937473 -108351189 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 75937582 75937610 -108351052 + AT_rich Low_complexity Low_complexity 1 28 0 240 274 206 0 chr4 75938073 75938175 -108350487 + L2 LINE L2 3190 3312 -1 22 35 0 0 chr4 75938547 75938576 -108350086 + AT_rich Low_complexity Low_complexity 1 29 0 499 291 66 28 chr4 75939377 75939590 -108349072 + MIR SINE MIR 2 222 -40 26 0 0 0 chr4 75940075 75940101 -108348561 + AT_rich Low_complexity Low_complexity 1 26 0 5478 46 1 0 chr4 75940101 75940771 -108347891 - L1PA5 LINE L1 -8 6146 5476 7313 35 0 0 chr4 75940776 75942242 -108346420 - L1PA4 LINE L1 -3 6152 4679 745 288 35 41 chr4 75942366 75942743 -108345919 + L2 LINE L2 2690 3065 -248 188 400 70 0 chr4 75943061 75943176 -108345486 - L2 LINE L2 -10 3262 3140 494 252 57 0 chr4 75943384 75943507 -108345155 + L2 LINE L2 3180 3309 -4 224 295 33 0 chr4 75944139 75944200 -108344462 + MIR SINE MIR 3 65 -197 244 250 125 55 chr4 75944218 75944346 -108344316 + LTR33 LTR ERVL 21 157 -364 594 284 142 0 chr4 75944649 75944811 -108343851 + MIR SINE MIR 76 260 -2 1936 151 0 3 chr4 75944981 75945272 -108343390 + AluJb SINE Alu 3 292 -20 1039 128 256 0 chr4 75945372 75945575 -108343087 - Tigger3(Golem) DNA MER2_type -21 3008 2754 1304 199 4 32 chr4 75945575 75945856 -108342806 + AluJo SINE Alu 39 311 -1 2600 104 65 22 chr4 75945856 75946319 -108342343 - Tigger3(Golem) DNA MER2_type -270 2759 2277 563 211 0 0 chr4 75946310 75946414 -108342248 - Tigger3(Golem) DNA MER2_type -2921 108 5 * 475 311 72 30 chr4 75946443 75946678 -108341984 + HAL1 LINE L1 1778 2022 -485 2516 108 16 0 chr4 75946685 75947064 -108341598 + L1MA6 LINE L1 5909 6293 -7 24 32 0 0 chr4 75947307 75947338 -108341324 + AT_rich Low_complexity Low_complexity 1 31 0 483 361 139 31 chr4 75947466 75947948 -108340714 - L2 LINE L2 -580 2734 2201 306 122 20 0 chr4 75948047 75948096 -108340566 - L2 LINE L2 -2 3311 3262 1045 189 5 5 chr4 75948981 75949166 -108339496 + MER5A DNA MER1_type 3 187 -2 281 372 60 22 chr4 75949369 75949552 -108339110 + L2 LINE L2 1713 1902 -1412 928 313 75 47 chr4 75949643 75949777 -108338885 - L2 LINE L2 0 3313 3184 258 51 26 0 chr4 75949777 75949816 -108338846 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2147 127 0 0 chr4 75949816 75950100 -108338562 - AluSx SINE Alu -28 284 1 928 313 75 47 chr4 75950100 75950459 -108338203 - L2 LINE L2 -128 3185 2805 * 1223 278 122 30 chr4 75950454 75951044 -108337618 - L2 LINE L2 -776 2538 1895 1406 64 21 5 chr4 75951150 75951337 -108337325 - MLT2A1 LTR ERVL -254 190 1 23803 81 13 1 chr4 75951338 75956868 -108331794 - HERVL-A1 LTR ERVL -1 5653 1 276 125 0 21 chr4 75956868 75956916 -108331746 - MLT2A1 LTR ERVL 0 414 368 1717 160 0 7 chr4 75957046 75957334 -108331328 - L1MB2 LINE L1 -228 5943 5658 1573 169 35 3 chr4 75957343 75957782 -108330880 - L1M4 LINE L1 -3757 2625 2173 22 0 0 0 chr4 75958146 75958168 -108330494 + AT_rich Low_complexity Low_complexity 1 22 0 1628 137 0 114 chr4 75958273 75958623 -108330039 + AluJo SINE Alu 1 310 -2 190 343 0 0 chr4 75959034 75959104 -108329558 - L2 LINE L2 -11 3261 3192 382 246 24 63 chr4 75959181 75959307 -108329355 - L2 LINE L2 -4 3309 3189 23 33 0 0 chr4 75959976 75960006 -108328656 + AT_rich Low_complexity Low_complexity 1 30 0 191 268 37 37 chr4 75961729 75961811 -108326851 + L3 LINE CR1 84 165 -1412 235 358 62 25 chr4 75962253 75962527 -108326135 + L2 LINE L2 2568 2851 -463 316 393 18 18 chr4 75962585 75962748 -108325914 + MIR SINE MIR 50 212 -50 1696 206 67 34 chr4 75964599 75964630 -108324032 + MLT1C LTR MaLR 5 33 -434 249 33 0 0 chr4 75964630 75964660 -108324002 + (CA)n Simple_repeat Simple_repeat 2 31 0 1696 206 67 34 chr4 75964660 75965074 -108323588 + MLT1C LTR MaLR 33 465 -2 1440 123 45 0 chr4 75966473 75966693 -108321969 + MER30 DNA MER1_type 1 230 0 725 281 13 39 chr4 75966768 75966999 -108321663 + LTR16A LTR ERVL 106 330 -120 22 56 0 0 chr4 75967094 75967130 -108321532 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr4 75967294 75967324 -108321338 + AT_rich Low_complexity Low_complexity 1 30 0 237 309 186 0 chr4 75967324 75967421 -108321241 + L2 LINE L2 3147 3261 -11 2978 107 7 11 chr4 75967558 75968016 -108320646 - L1PA11 LINE L1 0 6174 5719 192 40 0 0 chr4 75969694 75969719 -108318943 + (TTG)n Simple_repeat Simple_repeat 2 26 0 352 256 96 16 chr4 75969982 75970107 -108318555 - L2 LINE L2 0 3313 3179 * 495 241 166 29 chr4 75970093 75970410 -108318252 - L2 LINE L2 -237 3035 2678 219 327 28 37 chr4 75970433 75970540 -108318122 + L2 LINE L2 3167 3272 0 227 54 27 0 chr4 75971616 75971653 -108317009 + (CA)n Simple_repeat Simple_repeat 2 39 0 492 316 32 0 chr4 75973403 75973558 -108315104 - MIR SINE MIR -49 213 54 32 43 0 0 chr4 75973619 75973665 -108314997 + AT_rich Low_complexity Low_complexity 1 46 0 10115 213 55 16 chr4 75973787 75976834 -108311828 + L1M4c LINE L1 19 3338 -3044 5796 228 40 22 chr4 75976831 75978126 -108310536 + L1M4c LINE L1 3798 5129 -1253 * 2000 171 97 10 chr4 75978126 75978519 -108310143 + MSTA LTR MaLR 2 428 0 5796 228 40 22 chr4 75978519 75978837 -108309825 + L1M4c LINE L1 5129 5440 -942 2061 120 14 0 chr4 75978971 75979293 -108309369 + AluSg SINE Alu 3 328 0 304 374 5 35 chr4 75979295 75979498 -108309164 + L1 LINE L1 1532 1728 -5768 2368 254 70 34 chr4 75980126 75980876 -108307786 + L1 LINE L1 2041 2763 -4802 2489 49 0 10 chr4 75980876 75981181 -108307481 + AluY SINE Alu 1 302 -9 2368 254 70 34 chr4 75981181 75982362 -108306300 + L1 LINE L1 2763 3900 -3665 243 0 0 0 chr4 75982362 75982389 -108306273 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1630 111 41 0 chr4 75982391 75982635 -108306027 - L1PA12 LINE L1 -8 6160 5907 2368 254 70 34 chr4 75982635 75983286 -108305376 + L1 LINE L1 3900 4689 -2876 * 10558 165 19 10 chr4 75983278 75988997 -108299665 + L1M1 LINE L1 13 5909 -1656 4540 15 1 0 chr4 75988999 75989879 -108298783 - L1P1 LINE L1 -421 5734 4854 3692 12 0 0 chr4 75989876 75990295 -108298367 + L1HS LINE L1 5735 6153 -2 * 200 279 0 0 chr4 75990297 75990365 -108298297 + A-rich Low_complexity Low_complexity 1 68 0 3743 181 7 6 chr4 75990365 75991098 -108297564 + L1M1 LINE L1 5896 6629 -936 2410 203 19 22 chr4 75991080 75991662 -108297000 + L1 LINE L1 5240 5819 -1746 * 1323 181 51 14 chr4 75991771 75992064 -108296598 - L1MC3 LINE L1 -101 7684 7381 275 359 44 9 chr4 75992246 75992462 -108296200 + MIR SINE MIR 34 259 -3 293 231 0 0 chr4 75993286 75993338 -108295324 - Tigger3(Golem) DNA MER2_type -2977 52 1 * 1529 174 44 4 chr4 75993338 75993612 -108295050 - Tigger3(Golem) DNA MER2_type -2744 285 1 497 227 26 178 chr4 75993928 75994192 -108294470 + L2 LINE L2 2141 2364 -950 293 146 0 0 chr4 75994309 75994350 -108294312 + Tigger3(Golem) DNA MER2_type 2997 3037 0 314 379 80 26 chr4 75994358 75994622 -108294040 + L2 LINE L2 2580 2857 -457 402 329 90 0 chr4 75995375 75995530 -108293132 + MIR SINE MIR 31 199 -63 2061 172 39 33 chr4 75995534 75996086 -108292576 - MLT2A2 LTR ERVL -3 551 1 1257 221 24 7 chr4 75997037 75997335 -108291327 - L1P3 LINE L1 -4870 2714 2412 4157 241 43 33 chr4 75997375 75998488 -108290174 - L1P3 LINE L1 -6444 1137 14 307 196 108 39 chr4 75998495 75998597 -108290065 - L1MCa LINE L1 -4323 2103 1995 2139 265 53 45 chr4 75998628 76000326 -108288336 - L1MCc LINE L1 -3985 3137 1213 642 310 81 30 chr4 76000327 76000662 -108288000 - L1MCc LINE L1 -5265 1158 807 416 292 131 39 chr4 76000787 76001123 -108287539 - L1MCc LINE L1 -6037 386 20 1298 185 33 94 chr4 76002581 76002944 -108285718 + MER58B DNA MER1_type 1 341 0 219 36 0 0 chr4 76003842 76003870 -108284792 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1575 220 124 73 chr4 76004044 76004753 -108283909 - LTR1B LTR ERV1 -81 745 1 245 353 50 34 chr4 76005329 76005448 -108283214 - L2 LINE L2 -25 3247 3127 22 35 0 0 chr4 76005781 76005810 -108282852 + AT_rich Low_complexity Low_complexity 1 29 0 23 68 0 0 chr4 76006305 76006349 -108282313 + AT_rich Low_complexity Low_complexity 1 44 0 440 262 49 0 chr4 76006379 76006501 -108282161 - MLT2E LTR ERVL 0 628 501 * 738 281 145 5 chr4 76006495 76006716 -108281946 - MLT2E LTR ERVL -376 252 1 404 354 102 31 chr4 76006746 76007127 -108281535 - L2 LINE L2 0 3272 2865 22 0 0 0 chr4 76007646 76007668 -108280994 + AT_rich Low_complexity Low_complexity 1 22 0 24 85 0 0 chr4 76007788 76007847 -108280815 + AT_rich Low_complexity Low_complexity 1 59 0 22 88 0 0 chr4 76008249 76008306 -108280356 + AT_rich Low_complexity Low_complexity 1 57 0 808 342 40 3 chr4 76008782 76009083 -108279579 + LTR16A LTR ERVL 16 327 -123 8342 87 21 1 chr4 76009187 76011163 -108277499 + L1PA8 LINE L1 4166 6174 0 454 269 54 91 chr4 76011166 76011671 -108276991 + L1MEd LINE L1 378 813 -5316 448 65 0 0 chr4 76011671 76011733 -108276929 - L1PA6 LINE L1 0 6154 6093 454 269 54 91 chr4 76011733 76012270 -108276392 + L1MEd LINE L1 813 1369 -4760 200 83 62 42 chr4 76012736 76012784 -108275878 + A-rich Low_complexity Low_complexity 1 49 0 714 128 28 0 chr4 76013056 76013165 -108275497 - MER44D DNA MER2_type 0 609 498 975 147 60 65 chr4 76013222 76013389 -108275273 - MER44D DNA MER2_type -1962 529 363 2428 69 0 0 chr4 76013389 76013693 -108274969 + AluY SINE Alu 5 308 -3 975 147 60 65 chr4 76013693 76013757 -108274905 - MER44D DNA MER2_type -2128 363 29 394 257 46 9 chr4 76013858 76013967 -108274695 - MLT1E3 LTR MaLR -164 460 348 278 348 39 44 chr4 76014145 76014326 -108274336 - MLT1E3-int LTR MaLR -486 885 706 522 274 26 7 chr4 76014400 76014562 -108274100 - MLT1E3-int LTR MaLR -899 472 315 21 0 0 0 chr4 76014667 76014688 -108273974 + AT_rich Low_complexity Low_complexity 1 21 0 632 265 134 77 chr4 76014740 76015196 -108273466 - MLT1E3 LTR MaLR -142 482 1 909 326 52 11 chr4 76015621 76016062 -108272600 - MLT1J LTR MaLR -51 460 2 1975 89 0 0 chr4 76016604 76016874 -108271788 - L1PA8 LINE L1 -3 6169 5900 2308 64 0 0 chr4 76016874 76017171 -108271491 + L1PA8 LINE L1 5602 5898 -233 24 0 0 0 chr4 76017875 76017899 -108270763 + AT_rich Low_complexity Low_complexity 1 24 0 29 0 0 0 chr4 76018378 76018407 -108270255 + AT_rich Low_complexity Low_complexity 1 29 0 254 269 79 102 chr4 76018583 76018888 -108269774 + L1MC/D LINE L1 5340 5637 -2171 892 37 0 0 chr4 76019015 76019124 -108269538 + L1PA2 LINE L1 6047 6155 0 186 143 0 0 chr4 76019127 76019162 -108269500 + (A)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr4 76019458 76019481 -108269181 + AT_rich Low_complexity Low_complexity 1 23 0 2071 47 4 0 chr4 76020560 76020818 -108267844 + L1PA8 LINE L1 5911 6169 -3 304 280 143 58 chr4 76020944 76021237 -108267425 - L3 LINE CR1 -262 1315 998 602 241 88 23 chr4 76021780 76022041 -108266621 + L1MC5 LINE L1 7661 7938 -23 925 159 12 0 chr4 76022810 76022973 -108265689 - L1MD2 LINE L1 -87 6272 6108 649 311 31 8 chr4 76023033 76023287 -108265375 - MIR SINE MIR 0 262 3 438 286 162 0 chr4 76025915 76026069 -108262593 + MIR SINE MIR 3 181 -81 503 241 82 46 chr4 76026323 76026518 -108262144 + MLT1K LTR MaLR 382 583 -5 578 132 49 8 chr4 76026532 76026783 -108261879 + (TA)n Simple_repeat Simple_repeat 1 261 0 184 130 43 0 chr4 76026800 76026846 -108261816 + (TA)n Simple_repeat Simple_repeat 2 49 0 827 227 94 20 chr4 76027048 76027251 -108261411 - MLT1F LTR MaLR -3 564 347 * 846 179 84 37 chr4 76027250 76027440 -108261222 - MLT1F LTR MaLR -343 199 1 373 269 0 0 chr4 76027446 76027524 -108261138 - MIR SINE MIR -115 147 70 2684 163 84 65 chr4 76027955 76028560 -108260102 - L1MA9 LINE L1 -314 5998 5360 2141 105 3 19 chr4 76028560 76028875 -108259787 - AluSp SINE Alu -1 312 3 2684 163 84 65 chr4 76028875 76029350 -108259312 - L1MA9 LINE L1 -952 5360 4895 212 59 78 0 chr4 76031252 76031303 -108257359 + (TA)n Simple_repeat Simple_repeat 2 56 0 270 384 8 66 chr4 76031920 76032024 -108256638 + L2 LINE L2 3004 3112 -160 911 205 76 0 chr4 76032024 76032195 -108256467 - MER5A DNA MER1_type -4 185 2 270 384 8 66 chr4 76032195 76032332 -108256330 + L2 LINE L2 3112 3231 -41 232 289 12 93 chr4 76032350 76032566 -108256096 + MIR SINE MIR 12 204 -58 207 225 0 0 chr4 76032566 76032606 -108256056 + (TA)n Simple_repeat Simple_repeat 1 40 0 228 147 67 67 chr4 76032940 76033015 -108255647 - MER3 DNA MER1_type -25 184 110 246 71 28 0 chr4 76033865 76033907 -108254755 - MLT2A2 LTR ERVL -7 446 395 267 31 0 0 chr4 76033918 76033950 -108254712 + (TG)n Simple_repeat Simple_repeat 1 32 0 43639 40 2 2 chr4 76034067 76040223 -108248439 - L1PA3 LINE L1 -1 6154 2 26 0 0 0 chr4 76040584 76040610 -108248052 + AT_rich Low_complexity Low_complexity 1 26 0 1991 147 0 0 chr4 76040748 76041065 -108247597 + AluSx SINE Alu 1 317 0 797 203 42 21 chr4 76041206 76041398 -108247264 + MLT1H LTR MaLR 12 207 -342 25 0 0 0 chr4 76041448 76041473 -108247189 + AT_rich Low_complexity Low_complexity 1 25 0 989 197 63 22 chr4 76042577 76042846 -108245816 + L1MB8 LINE L1 5894 6173 -5 288 172 0 0 chr4 76043059 76043117 -108245545 + (TA)n Simple_repeat Simple_repeat 1 58 0 251 198 0 66 chr4 76043120 76043226 -108245436 - L1MC4 LINE L1 -1339 6703 6605 615 272 102 5 chr4 76043454 76043660 -108245002 - MIR SINE MIR -3 259 34 576 303 38 38 chr4 76043666 76043904 -108244758 + MIR SINE MIR 13 250 -12 22 0 0 0 chr4 76044245 76044267 -108244395 + AT_rich Low_complexity Low_complexity 1 22 0 2790 53 17 0 chr4 76044364 76044720 -108243942 + L1PA5 LINE L1 5777 6138 -16 333 0 0 0 chr4 76044720 76044757 -108243905 + (TA)n Simple_repeat Simple_repeat 2 38 0 201 94 0 0 chr4 76045179 76045211 -108243451 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 479 325 14 11 chr4 76045743 76046020 -108242642 - L1MEc LINE L1 -3621 2594 2317 1422 220 20 33 chr4 76046126 76046521 -108242141 - MLT1B LTR MaLR 0 390 1 258 293 60 17 chr4 76046863 76047095 -108241567 - L1MEc LINE L1 -4579 1817 1576 465 304 58 33 chr4 76047200 76047476 -108241186 - L1MEc LINE L1 -5836 369 87 387 0 0 0 chr4 76047566 76047609 -108241053 + (TG)n Simple_repeat Simple_repeat 2 44 0 429 325 13 0 chr4 76047940 76048094 -108240568 - MER117 DNA MER1_type -29 168 13 2081 95 7 3 chr4 76048176 76048470 -108240192 - AluSg SINE Alu -14 296 2 2078 138 0 0 chr4 76049563 76049867 -108238795 - AluSx SINE Alu -8 304 1 243 319 97 21 chr4 76050153 76050297 -108238365 + L2 LINE L2 2334 2488 -826 291 246 94 89 chr4 76050356 76050864 -108237798 - L1MC5 LINE L1 -188 7773 7263 471 269 53 14 chr4 76050943 76051163 -108237499 - L1MC4a LINE L1 -633 7233 6999 623 275 73 26 chr4 76051204 76051517 -108237145 - L1ME LINE L1 -577 5585 5258 306 313 62 49 chr4 76051523 76051766 -108236896 - L1ME LINE L1 -891 5255 5010 21 0 0 0 chr4 76051876 76051897 -108236765 + AT_rich Low_complexity Low_complexity 1 21 0 1234 196 161 9 chr4 76053106 76053423 -108235239 - MLT1A1 LTR MaLR 0 365 1 1289 199 52 7 chr4 76053455 76053742 -108234920 + MER33 DNA MER1_type 3 302 -22 345 303 75 88 chr4 76053901 76054041 -108234621 + MER102b DNA MER1_type 26 166 -1262 2422 56 7 13 chr4 76054041 76054343 -108234319 + AluSq SINE Alu 2 301 -12 345 303 75 88 chr4 76054343 76054522 -108234140 + MER102b DNA MER1_type 166 341 0 48 32 0 0 chr4 76054765 76054827 -108233835 + AT_rich Low_complexity Low_complexity 1 62 0 232 354 8 31 chr4 76054827 76054879 -108233783 - MIR SINE MIR -57 205 153 2085 137 50 19 chr4 76054879 76055243 -108233419 + THE1C LTR MaLR 1 375 0 232 354 8 31 chr4 76055243 76055317 -108233345 - MIR SINE MIR -109 153 82 479 118 29 29 chr4 76056314 76056416 -108232246 - L1MB3 LINE L1 -2 6181 6080 679 263 55 122 chr4 76056425 76057212 -108231450 - L1MC4 LINE L1 0 8042 7309 287 271 186 8 chr4 76057962 76058080 -108230582 - MIR3 SINE MIR -40 168 30 32 43 0 0 chr4 76058277 76058323 -108230339 + AT_rich Low_complexity Low_complexity 1 46 0 222 378 0 0 chr4 76058744 76058818 -108229844 + polypurine Low_complexity Low_complexity 3 76 0 202 360 137 7 chr4 76058946 76059099 -108229563 - L2 LINE L2 -213 3059 2887 262 428 53 8 chr4 76059277 76059408 -108229254 - L2 LINE L2 -8 3264 3128 386 265 65 41 chr4 76059415 76059585 -108229077 - LTR67 LTR ERVL 0 557 384 793 207 61 68 chr4 76059856 76060176 -108228486 - LTR1B LTR ERV1 0 826 543 5941 85 9 13 chr4 76060582 76061441 -108227221 - L1PB1 LINE L1 -3 6148 5293 5371 136 75 5 chr4 76061685 76062714 -108225948 - L1PA15 LINE L1 -3 6162 5050 33 56 0 0 chr4 76062776 76062830 -108225832 + AT_rich Low_complexity Low_complexity 1 54 0 23 54 0 0 chr4 76062887 76062924 -108225738 + AT_rich Low_complexity Low_complexity 1 37 0 212 200 17 0 chr4 76063705 76063765 -108224897 + GA-rich Low_complexity Low_complexity 1 61 0 5758 74 11 0 chr4 76065041 76065799 -108222863 + L1PA7 LINE L1 3982 4747 -1399 1771 77 8 16 chr4 76065799 76066033 -108222629 + L1PA7 LINE L1 5901 6146 -8 37 39 0 0 chr4 76066033 76066084 -108222578 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr4 76066138 76066159 -108222503 + AT_rich Low_complexity Low_complexity 1 21 0 778 282 46 9 chr4 76066448 76066698 -108221964 - MIR SINE MIR -3 259 4 346 77 0 0 chr4 76067235 76067287 -108221375 - L1MA8 LINE L1 -4 6287 6236 1548 260 0 3 chr4 76067976 76068295 -108220367 - MLT1A1 LTR MaLR 0 365 48 1346 157 6 129 chr4 76068425 76068781 -108219881 + MLT1B LTR MaLR 79 390 0 22 35 0 0 chr4 76068939 76068968 -108219694 + AT_rich Low_complexity Low_complexity 1 29 0 32 67 0 0 chr4 76069203 76069263 -108219399 + AT_rich Low_complexity Low_complexity 1 60 0 23 0 0 0 chr4 76069379 76069402 -108219260 + AT_rich Low_complexity Low_complexity 1 23 0 1726 194 86 108 chr4 76069470 76070136 -108218526 - L1MC4 LINE L1 -145 7897 7247 498 58 0 14 chr4 76070247 76070316 -108218346 - MADE1 DNA Mariner -12 68 1 201 211 0 0 chr4 76070536 76070588 -108218074 + (CA)n Simple_repeat Simple_repeat 2 53 0 753 248 127 60 chr4 76070621 76071271 -108217391 + L2 LINE L2 2445 3139 -174 21 0 0 0 chr4 76072795 76072816 -108215846 + AT_rich Low_complexity Low_complexity 1 21 0 391 293 9 0 chr4 76073830 76073936 -108214726 + MIR SINE MIR 134 240 -22 446 311 114 15 chr4 76074011 76074275 -108214387 - L2 LINE L2 -1051 2263 1974 752 225 70 16 chr4 76074424 76074611 -108214051 + MIR SINE MIR 10 206 -56 401 260 30 77 chr4 76074633 76074802 -108213860 - L2 LINE L2 -1367 1947 1787 342 0 0 0 chr4 76074844 76074882 -108213780 + (TG)n Simple_repeat Simple_repeat 2 39 0 180 0 0 0 chr4 76075473 76075493 -108213169 + (TAA)n Simple_repeat Simple_repeat 2 21 0 279 324 37 22 chr4 76075533 76075669 -108212993 + MIR SINE MIR 91 228 -34 1201 241 36 105 chr4 76077591 76078069 -108210593 - MLT1E2 LTR MaLR 0 626 61 180 0 0 0 chr4 76078776 76078796 -108209866 + (T)n Simple_repeat Simple_repeat 1 20 0 262 232 0 0 chr4 76080170 76080226 -108208436 - L2 LINE L2 -1 3312 3257 199 268 49 37 chr4 76080203 76080285 -108208377 + MIR3 SINE MIR 89 171 -37 * 1334 106 0 0 chr4 76081509 76081689 -108206973 - AluSq SINE Alu -11 302 123 1158 236 165 10 chr4 76082082 76082598 -108206064 - L1MEc LINE L1 -2677 3538 2943 1409 298 83 42 chr4 76082611 76083400 -108205262 - L1MEc LINE L1 -4722 1674 918 1830 158 0 0 chr4 76083400 76083673 -108204989 + AluSq SINE Alu 1 273 -40 396 0 0 0 chr4 76083673 76083717 -108204945 + (TA)n Simple_repeat Simple_repeat 2 45 0 1409 298 83 42 chr4 76083717 76084061 -108204601 - L1MEc LINE L1 -5477 919 494 397 334 82 77 chr4 76085644 76086041 -108202621 + L2 LINE L2 2424 2817 -455 3572 188 100 37 chr4 76086041 76086853 -108201809 + MER21B LTR ERV1 1 863 0 397 334 82 77 chr4 76086853 76087243 -108201419 + L2 LINE L2 2817 3217 -55 405 0 0 0 chr4 76087307 76087352 -108201310 + (TGAG)n Simple_repeat Simple_repeat 3 47 0 327 104 0 0 chr4 76087873 76087921 -108200741 + (CA)n Simple_repeat Simple_repeat 2 49 0 482 234 94 53 chr4 76088200 76088371 -108200291 + MIR SINE MIR 73 250 -12 558 230 31 86 chr4 76088438 76088636 -108200026 + L1MC4a LINE L1 5712 5898 -1910 1962 119 20 27 chr4 76088636 76088930 -108199732 + AluSx SINE Alu 1 292 -20 558 230 31 86 chr4 76088930 76088953 -108199709 + L1MC4a LINE L1 5898 5921 -1887 435 286 98 28 chr4 76088932 76089219 -108199443 - L1ME LINE L1 -313 5808 5502 * 1045 183 54 81 chr4 76089365 76089660 -108199002 - AluJo SINE Alu -11 291 5 22 0 0 0 chr4 76089722 76089744 -108198918 + AT_rich Low_complexity Low_complexity 1 22 0 317 280 74 40 chr4 76089841 76090016 -108198646 - L1ME LINE L1 -977 5169 4989 988 225 73 6 chr4 76090314 76090629 -108198033 - LTR37A LTR ERV1 0 426 91 1340 256 62 80 chr4 76090919 76091705 -108196957 - MER31-int LTR ERV1 -832 4104 3333 2204 113 0 0 chr4 76092635 76092927 -108195735 - AluSg SINE Alu -17 293 2 228 355 19 9 chr4 76092981 76093088 -108195574 - MER5A DNA MER1_type -71 118 11 752 182 28 0 chr4 76093144 76093287 -108195375 + Ricksha_a DNA DNA 2 148 -1033 * 5001 159 17 70 chr4 76093278 76093486 -108195176 + Ricksha_b DNA DNA 232 449 -2405 2234 146 0 26 chr4 76093486 76093871 -108194791 - THE1C LTR MaLR 0 375 1 5001 159 17 70 chr4 76093871 76094735 -108193927 + Ricksha_b DNA DNA 449 1247 -7 341 280 0 40 chr4 76094742 76094842 -108193820 + MIR SINE MIR 53 148 -114 9582 28 1 2 chr4 76095395 76096666 -108191996 + L1P2 LINE L1 4229 5499 -656 233 111 44 0 chr4 76097020 76097065 -108191597 + (TATG)n Simple_repeat Simple_repeat 2 48 0 357 188 58 0 chr4 76097590 76097659 -108191003 - MER96 DNA MER1_type? -5 170 98 2415 62 0 3 chr4 76097999 76098304 -108190358 - AluY SINE Alu -7 304 1 285 356 42 0 chr4 76098416 76098534 -108190128 - L1MC/D LINE L1 -2148 5660 5538 230 232 0 0 chr4 76098539 76098595 -108190067 + L1MC4 LINE L1 6648 6703 -1339 198 0 0 0 chr4 76098621 76098643 -108190019 + (TTTTC)n Simple_repeat Simple_repeat 2 23 0 1270 100 6 0 chr4 76098646 76098816 -108189846 - AluSg/x SINE Alu -32 278 108 248 269 47 23 chr4 76098860 76099036 -108189626 - L1MC/D LINE L1 -686 5484 5306 215 316 25 0 chr4 76099637 76099716 -108188946 + MIR SINE MIR 176 256 -6 686 144 69 98 chr4 76100388 76100561 -108188101 - MER20 DNA MER1_type 0 219 52 1808 28 0 0 chr4 76100738 76100954 -108187708 - L1PA5 LINE L1 0 6154 5939 966 191 61 30 chr4 76101105 76101336 -108187326 + L1 LINE L1 4204 4441 -1705 2021 122 34 0 chr4 76101370 76101665 -108186997 - AluSg SINE Alu -5 305 1 1135 178 37 28 chr4 76101861 76102075 -108186587 + MLT1D LTR MaLR 289 504 -1 248 343 66 50 chr4 76102275 76102473 -108186189 + L2 LINE L2 2897 3097 -175 21 0 0 0 chr4 76102639 76102660 -108186002 + AT_rich Low_complexity Low_complexity 1 21 0 202 359 127 27 chr4 76103728 76103948 -108184714 - L2 LINE L2 -224 3048 2807 225 327 168 41 chr4 76104105 76104493 -108184169 - L2 LINE L2 -558 2756 2320 200 35 35 0 chr4 76105958 76105987 -108182675 + (TA)n Simple_repeat Simple_repeat 2 31 0 26 0 0 0 chr4 76106775 76106801 -108181861 + AT_rich Low_complexity Low_complexity 1 26 0 661 279 17 0 chr4 76106860 76107032 -108181630 + MIR SINE MIR 88 262 0 188 369 12 12 chr4 76107581 76107665 -108180997 + MIR SINE MIR 5 88 -174 686 277 43 30 chr4 76108757 76108988 -108179674 + MIR SINE MIR 9 242 -20 201 283 132 40 chr4 76109042 76109194 -108179468 - MIR SINE MIR -77 185 20 221 83 28 0 chr4 76110531 76110567 -108178095 + (CA)n Simple_repeat Simple_repeat 2 38 0 193 57 57 0 chr4 76111921 76111956 -108176706 + GA-rich Low_complexity Low_complexity 2 38 0 21 36 0 0 chr4 76112037 76112065 -108176597 + AT_rich Low_complexity Low_complexity 1 28 0 534 363 98 36 chr4 76114575 76115571 -108173091 - L2 LINE L2 -31 3241 2173 289 287 9 26 chr4 76116078 76116193 -108172469 - L1ME4a LINE L1 0 6121 6009 226 212 53 9 chr4 76116226 76116339 -108172323 + (TA)n Simple_repeat Simple_repeat 2 119 0 816 232 43 48 chr4 76117153 76117524 -108171138 + L1MC5 LINE L1 7545 7913 -48 337 258 73 32 chr4 76117627 76117751 -108170911 + MER112 DNA MER1_type 130 258 -2 225 0 0 0 chr4 76117910 76117935 -108170727 + (TG)n Simple_repeat Simple_repeat 2 26 0 225 0 0 0 chr4 76117934 76117959 -108170703 + (TA)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr4 76118009 76118031 -108170631 + AT_rich Low_complexity Low_complexity 1 22 0 314 257 91 76 chr4 76118031 76118241 -108170421 - L1ME LINE L1 -508 5613 5401 290 164 60 17 chr4 76119281 76119397 -108169265 + (TA)n Simple_repeat Simple_repeat 2 122 0 336 245 0 43 chr4 76119399 76119493 -108169169 - L1MC4 LINE L1 -1339 6703 6614 360 0 0 0 chr4 76119560 76119600 -108169062 + (CA)n Simple_repeat Simple_repeat 2 41 0 23 0 0 0 chr4 76120387 76120410 -108168252 + AT_rich Low_complexity Low_complexity 1 23 0 275 312 75 11 chr4 76120422 76120608 -108168054 - L1ME4a LINE L1 -1 6120 5923 21 0 0 0 chr4 76120930 76120951 -108167711 + AT_rich Low_complexity Low_complexity 1 21 0 2224 144 19 3 chr4 76122506 76122875 -108165787 - THE1C LTR MaLR 0 375 1 9554 133 36 12 chr4 76122875 76124418 -108164244 - THE1C-int LTR MaLR 0 1580 1 2459 134 5 0 chr4 76124418 76124791 -108163871 - THE1C LTR MaLR 0 375 1 306 106 0 0 chr4 76125725 76125772 -108162890 + (CA)n Simple_repeat Simple_repeat 2 48 0 22 35 0 0 chr4 76126191 76126220 -108162442 + AT_rich Low_complexity Low_complexity 1 29 0 26 50 0 0 chr4 76126574 76126614 -108162048 + AT_rich Low_complexity Low_complexity 1 40 0 3833 142 47 0 chr4 76127022 76127664 -108160998 + L1PA13 LINE L1 5491 6162 -1 778 260 18 22 chr4 76128065 76128288 -108160374 + MIR SINE MIR 41 262 0 192 295 16 0 chr4 76129168 76129229 -108159433 + L2 LINE L2 3252 3313 0 310 283 0 50 chr4 76131143 76131242 -108157420 - L2 LINE L2 0 3313 3220 197 360 65 59 chr4 76131325 76131631 -108157031 - L2 LINE L2 -539 2775 2468 234 0 0 0 chr4 76132146 76132172 -108156490 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 3186 210 19 8 chr4 76133220 76133859 -108154803 + MER82 DNA MER2_type 7 652 -1 246 315 19 46 chr4 76133863 76133971 -108154691 - MIR SINE MIR -110 152 48 368 357 9 0 chr4 76134009 76134121 -108154541 + MIR SINE MIR 1 113 -149 2435 123 8 11 chr4 76134121 76134495 -108154167 + THE1C LTR MaLR 1 373 -2 9360 117 43 37 chr4 76134497 76136067 -108152595 + THE1C-int LTR MaLR 1 1580 0 1919 182 21 19 chr4 76136067 76136441 -108152221 + THE1C LTR MaLR 1 375 0 368 185 0 190 chr4 76136713 76136887 -108151775 + L1MA9 LINE L1 5988 6058 -113 * 2437 184 23 34 chr4 76136886 76137295 -108151367 + L1M2 LINE L1 5058 5470 -830 2044 123 16 48 chr4 76137295 76137669 -108150993 + THE1B LTR MaLR 1 362 -2 11299 103 3 0 chr4 76137671 76139246 -108149416 + THE1B-int LTR MaLR 1 1580 0 1838 151 22 46 chr4 76139248 76139619 -108149043 + THE1B LTR MaLR 3 364 0 2437 184 23 34 chr4 76139619 76139950 -108148712 + L1M2 LINE L1 5472 5794 -506 5114 257 66 40 chr4 76140093 76140966 -108147696 - L1 LINE L1 -2472 3738 2889 5332 128 16 12 chr4 76140966 76141770 -108146892 + L1PA13 LINE L1 4688 5497 -666 474 95 68 0 chr4 76141770 76141844 -108146818 + MADE1 DNA Mariner 1 79 -1 5332 128 16 12 chr4 76141844 76142514 -108146148 + L1PA13 LINE L1 5497 6163 0 5114 257 66 40 chr4 76142514 76143012 -108145650 - L1 LINE L1 -3321 2889 2406 1547 171 0 15 chr4 76143012 76143286 -108145376 - AluJb SINE Alu 0 312 43 5114 257 66 40 chr4 76143286 76143897 -108144765 - L1 LINE L1 -3804 2406 1812 3287 129 2 6 chr4 76143897 76144410 -108144252 + MER9 LTR ERVK 1 511 0 5114 257 66 40 chr4 76144410 76146359 -108142303 - L1 LINE L1 -4398 1812 1 775 220 0 0 chr4 76146670 76146811 -108141851 + MER2 DNA MER2_type 1 141 -204 631 132 105 0 chr4 76146911 76147025 -108141637 + MER2 DNA MER2_type 174 299 -46 2227 154 83 0 chr4 76147378 76147439 -108141223 - MSTA LTR MaLR 0 428 374 216 0 0 0 chr4 76147439 76147463 -108141199 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2227 154 83 0 chr4 76147463 76147796 -108140866 - MSTA LTR MaLR -54 374 1 251 272 221 19 chr4 76147811 76147969 -108140693 - MLT1J2 LTR MaLR -213 237 48 300 341 36 0 chr4 76148129 76148267 -108140395 + MIR SINE MIR 120 262 0 23 54 0 0 chr4 76149404 76149441 -108139221 + AT_rich Low_complexity Low_complexity 1 37 0 2229 83 4 0 chr4 76149564 76149887 -108138775 + AluSc SINE Alu 1 324 0 207 343 131 36 chr4 76149930 76150067 -108138595 + MIR SINE MIR 31 180 -82 180 231 0 0 chr4 76151568 76151607 -108137055 + MIR SINE MIR 208 246 -16 1579 102 5 0 chr4 76151607 76151823 -108136839 + AluSx SINE Alu 1 217 -95 819 286 145 34 chr4 76151918 76152366 -108136296 - MLT1J LTR MaLR -13 498 1 181 344 16 0 chr4 76152394 76152455 -108136207 + MIR3 SINE MIR 110 171 -37 330 316 11 11 chr4 76153141 76153236 -108135426 + MIR SINE MIR 58 152 -56 190 339 113 17 chr4 76153292 76153407 -108135255 - MER5A DNA MER1_type -57 132 7 21 0 0 0 chr4 76154338 76154359 -108134303 + AT_rich Low_complexity Low_complexity 1 21 0 275 214 0 0 chr4 76154725 76154781 -108133881 + Charlie1 DNA MER1_type 51 106 -2655 * 570 244 11 22 chr4 76154772 76154952 -108133710 + Charlie1 DNA MER1_type 2563 2740 -21 435 221 37 15 chr4 76155662 76155798 -108132864 - MER31-int LTR ERV1 -3488 1448 1310 1120 172 69 66 chr4 76156597 76156897 -108131765 - LTR37A LTR ERV1 -2 424 121 687 12 0 0 chr4 76156897 76156979 -108131683 + L1PA3 LINE L1 6071 6152 -3 1120 172 69 66 chr4 76156979 76157027 -108131635 - LTR37A LTR ERV1 -305 121 75 28 0 0 0 chr4 76157859 76157887 -108130775 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 76158292 76158315 -108130347 + AT_rich Low_complexity Low_complexity 1 23 0 228 267 0 18 chr4 76159075 76159174 -108129488 + A-rich Low_complexity Low_complexity 1 158 0 497 267 34 20 chr4 76160265 76160411 -108128251 - MER5B DNA MER1_type -23 155 8 21 36 0 0 chr4 76160661 76160689 -108127973 + AT_rich Low_complexity Low_complexity 1 28 0 197 405 9 0 chr4 76161184 76161295 -108127367 - MER5B DNA MER1_type -66 112 1 357 226 59 39 chr4 76161709 76161811 -108126851 + L2 LINE L2 3210 3313 0 22 0 0 0 chr4 76162107 76162129 -108126533 + AT_rich Low_complexity Low_complexity 1 22 0 22 88 0 0 chr4 76163296 76163353 -108125309 + AT_rich Low_complexity Low_complexity 1 57 0 440 195 0 0 chr4 76164521 76164598 -108124064 - MER63 DNA MER1_type -309 752 676 22 35 0 0 chr4 76164633 76164662 -108124000 + AT_rich Low_complexity Low_complexity 1 29 0 27 62 0 0 chr4 76165636 76165684 -108122978 + AT_rich Low_complexity Low_complexity 1 48 0 21 36 0 0 chr4 76167736 76167764 -108120898 + AT_rich Low_complexity Low_complexity 1 28 0 2524 144 41 11 chr4 76168255 76168691 -108119971 - L1PB3 LINE L1 -2 6152 5704 189 271 0 0 chr4 76168779 76168827 -108119835 - L2 LINE L2 0 3313 3266 198 0 0 0 chr4 76170031 76170053 -108118609 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 22 56 0 0 chr4 76170212 76170248 -108118414 + AT_rich Low_complexity Low_complexity 1 36 0 275 300 161 8 chr4 76170397 76170527 -108118135 - MIR SINE MIR -5 257 108 21 0 0 0 chr4 76171232 76171253 -108117409 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr4 76172092 76172119 -108116543 + AT_rich Low_complexity Low_complexity 1 27 0 232 268 49 0 chr4 76172287 76172369 -108116293 - MIR SINE MIR -73 189 104 666 241 31 31 chr4 76173202 76173393 -108115269 + MER63A DNA MER1_type 15 205 -5 328 343 15 15 chr4 76173407 76173541 -108115121 - MIR SINE MIR -109 153 20 308 302 12 0 chr4 76173893 76173979 -108114683 + CT-rich Low_complexity Low_complexity 2 88 0 615 230 0 43 chr4 76174123 76174262 -108114400 + FLAM_C SINE Alu 1 133 0 2522 45 12 24 chr4 76175146 76175477 -108113185 - L1PA3 LINE L1 0 6155 5829 1069 167 5 15 chr4 76176360 76176564 -108112098 - MER3 DNA MER1_type -4 205 4 544 120 20 0 chr4 76177064 76177164 -108111498 + (TAGA)n Simple_repeat Simple_repeat 1 102 0 308 300 135 0 chr4 76178891 76179024 -108109638 - MIR3 SINE MIR -47 161 11 222 192 77 0 chr4 76179077 76179129 -108109533 - MIR SINE MIR -110 152 97 348 311 68 63 chr4 76179203 76179393 -108109269 - L2 LINE L2 0 3272 3082 202 271 0 0 chr4 76179609 76179657 -108109005 - L2 LINE L2 -2 3311 3264 279 341 48 0 chr4 76179875 76180001 -108108661 - MER94 DNA DNA 0 134 3 398 283 103 62 chr4 76180827 76181421 -108107241 - L1ME4a LINE L1 -14 6107 5490 41 58 0 0 chr4 76181484 76181553 -108107109 + AT_rich Low_complexity Low_complexity 1 69 0 272 280 16 8 chr4 76181580 76181705 -108106957 - L1P LINE L1 -776 5390 5265 705 82 0 0 chr4 76181718 76181815 -108106847 - AluY SINE Alu -8 303 207 216 250 15 15 chr4 76181910 76181978 -108106684 + (TA)n Simple_repeat Simple_repeat 1 68 0 2742 19 0 3 chr4 76183123 76183435 -108105227 + AluY SINE Alu 1 311 0 198 71 0 0 chr4 76183747 76183775 -108104887 + (GA)n Simple_repeat Simple_repeat 1 28 0 462 186 17 8 chr4 76184210 76184328 -108104334 - L1 LINE L1 -2758 3388 3270 * 5221 140 22 2 chr4 76184326 76185199 -108103463 + L1MB1 LINE L1 5279 6168 0 242 146 0 0 chr4 76186154 76186195 -108102467 - MADE1 DNA Mariner -4 76 36 1083 284 61 38 chr4 76187087 76187697 -108100965 - L2 LINE L2 0 3313 2686 5328 201 14 33 chr4 76187748 76188465 -108100197 - L1 LINE L1 -1187 4959 4275 185 0 40 0 chr4 76188465 76188490 -108100172 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 5328 201 14 33 chr4 76188490 76189028 -108099634 - L1 LINE L1 -1871 4275 3728 1015 209 68 134 chr4 76189140 76189343 -108099319 + MLT2C1 LTR ERVL 142 322 -92 667 53 35 9 chr4 76189343 76189457 -108099205 + (TAGA)n Simple_repeat Simple_repeat 1 117 0 1015 209 68 134 chr4 76189457 76189545 -108099117 + MLT2C1 LTR ERVL 322 414 0 487 227 9 9 chr4 76189545 76189655 -108099007 + MER81 DNA DNA 5 114 0 245 167 19 0 chr4 76189907 76189961 -108098701 - L1MB5 LINE L1 -225 5949 5895 996 138 21 49 chr4 76189971 76190204 -108098458 + L1MB7 LINE L1 5677 5904 -262 2546 117 15 15 chr4 76190445 76190839 -108097823 + MER83 LTR ERV1 1 394 -54 1851 115 60 29 chr4 76190825 76191139 -108097523 - THE1B LTR MaLR -38 326 3 * 11774 92 6 0 chr4 76191141 76192711 -108095951 - THE1B-int LTR MaLR 0 1580 1 2150 138 30 25 chr4 76192711 76193073 -108095589 - THE1B LTR MaLR 0 364 1 189 107 0 0 chr4 76193156 76193184 -108095478 + (GA)n Simple_repeat Simple_repeat 2 29 0 202 380 13 0 chr4 76193184 76193263 -108095399 - MIR SINE MIR -71 137 58 277 299 0 0 chr4 76193578 76193645 -108095017 - L2 LINE L2 0 3313 3247 295 212 124 35 chr4 76194399 76194512 -108094150 - MIR SINE MIR -77 185 63 3290 23 0 0 chr4 76194727 76195112 -108093550 - L1HS LINE L1 0 6155 5771 21 0 0 0 chr4 76196020 76196041 -108092621 + AT_rich Low_complexity Low_complexity 1 21 0 658 191 78 0 chr4 76196217 76196358 -108092304 + FRAM SINE Alu 1 152 -14 2151 133 0 7 chr4 76198380 76198689 -108089973 + AluSq SINE Alu 1 307 -6 262 241 0 38 chr4 76198862 76198941 -108089721 + L1ME4a LINE L1 5961 6036 -85 764 298 12 90 chr4 76199556 76199966 -108088696 + L2 LINE L2 2934 3311 -2 298 313 0 12 chr4 76200044 76200127 -108088535 + L2 LINE L2 3230 3311 -2 604 75 0 0 chr4 76200200 76200280 -108088382 - MADE1 DNA Mariner 0 80 1 1601 235 158 79 chr4 76201054 76201650 -108087012 + MLT1E3 LTR MaLR 3 615 -9 209 322 136 0 chr4 76202343 76202461 -108086201 + L2 LINE L2 3180 3313 0 374 262 19 0 chr4 76203553 76203660 -108085002 - MIR SINE MIR -6 256 148 236 189 149 0 chr4 76204168 76204242 -108084420 - MIR SINE MIR -29 233 149 201 313 78 16 chr4 76204356 76204484 -108084178 - MIR SINE MIR -17 245 110 370 167 309 0 chr4 76204691 76204775 -108083887 + MIR SINE MIR 35 144 -118 209 0 62 0 chr4 76204867 76204899 -108083763 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 2102 111 4 0 chr4 76204899 76205179 -108083483 - AluSg SINE Alu -1 312 1 252 77 0 0 chr4 76205690 76205729 -108082933 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 206 302 12 12 chr4 76205771 76205857 -108082805 + C-rich Low_complexity Low_complexity 5 90 0 297 197 0 0 chr4 76205969 76206030 -108082632 + (CA)n Simple_repeat Simple_repeat 1 61 0 308 263 98 105 chr4 76206510 76206795 -108081867 - L1M2 LINE L1 -5711 1138 856 225 0 0 0 chr4 76207448 76207473 -108081189 + (A)n Simple_repeat Simple_repeat 1 25 0 26 50 0 0 chr4 76212410 76212450 -108076212 + AT_rich Low_complexity Low_complexity 1 40 0 227 328 8 57 chr4 76212706 76212828 -108075834 + MIR SINE MIR 97 212 -50 758 231 87 0 chr4 76213103 76213276 -108075386 + MER5A DNA MER1_type 2 189 0 272 313 54 27 chr4 76213598 76213710 -108074952 + L2 LINE L2 3191 3305 -8 224 280 76 76 chr4 76214026 76214144 -108074518 - L2 LINE L2 -5 3267 3150 2188 117 0 3 chr4 76214988 76215286 -108073376 - AluSx SINE Alu -15 297 1 413 324 192 9 chr4 76215359 76215578 -108073084 - MIR SINE MIR 0 262 4 445 196 0 0 chr4 76215862 76215954 -108072708 - L1MB5 LINE L1 -7 6167 6076 663 327 91 37 chr4 76216346 76216753 -108071909 - L3 LINE CR1 -190 1387 959 842 172 38 69 chr4 76217906 76218168 -108070494 - Charlie5 DNA MER1_type 0 2616 2363 452 305 157 20 chr4 76218210 76218407 -108070255 - MIR SINE MIR -5 257 34 2880 174 29 38 chr4 76219042 76220017 -108068645 - L1MB5 LINE L1 -266 5908 4957 999 146 39 45 chr4 76222110 76222288 -108066374 + FRAM SINE Alu 1 174 -2 538 226 0 10 chr4 76223154 76223256 -108065406 - MER5A DNA MER1_type -80 109 9 315 350 61 19 chr4 76223269 76223483 -108065179 + MIR SINE MIR 37 259 -3 388 236 287 0 chr4 76227331 76227488 -108061174 + MIR SINE MIR 48 249 -13 8885 126 24 70 chr4 76277693 76277819 -108010843 - Tigger1 DNA MER2_type -860 1558 1428 482 135 54 0 chr4 76277819 76277893 -108010769 + AluJb SINE Alu 210 287 -25 8885 126 24 70 chr4 76277893 76278700 -108009962 - Tigger1 DNA MER2_type -990 1428 655 3036 76 60 0 chr4 76278700 76279119 -108009543 + MLT2A1 LTR ERVL 1 444 0 8885 126 24 70 chr4 76279119 76279745 -108008917 - Tigger1 DNA MER2_type -1763 655 1 14396 30 1 0 chr4 76279958 76282459 -108006203 + L1PA4 LINE L1 3658 6155 0 1392 41 0 0 chr4 76283891 76284061 -108004601 - L1PA5 LINE L1 -2 6152 5983 35 0 0 0 chr4 76284250 76284285 -108004377 + AT_rich Low_complexity Low_complexity 1 35 0 2020 131 0 0 chr4 76284483 76284758 -108003904 + AluSg SINE Alu 4 278 -32 255 31 0 0 chr4 76284765 76284797 -108003865 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 42 71 0 0 chr4 76285186 76285270 -108003392 + AT_rich Low_complexity Low_complexity 1 84 0 212 267 188 10 chr4 76285271 76285372 -108003290 - L2 LINE L2 0 3272 3154 1290 191 63 15 chr4 76285828 76286229 -108002433 - L1MA4A LINE L1 -26 6277 5800 206 152 0 22 chr4 76286731 76286777 -108001885 + CT-rich Low_complexity Low_complexity 4 48 0 1426 282 181 32 chr4 76286850 76287401 -108001261 - L2 LINE L2 -126 3187 2720 1400 180 53 28 chr4 76287401 76287757 -108000905 + MLT1A1 LTR MaLR 1 365 0 1426 282 181 32 chr4 76287757 76288232 -108000430 - L2 LINE L2 -593 2720 2317 2207 95 0 0 chr4 76288232 76288536 -108000126 - AluSc SINE Alu 0 308 5 1426 282 181 32 chr4 76288536 76288615 -108000047 - L2 LINE L2 -996 2317 1909 2156 135 0 0 chr4 76288652 76288956 -107999706 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr4 76289207 76289229 -107999433 + AT_rich Low_complexity Low_complexity 1 22 0 1680 197 0 7 chr4 76289342 76289642 -107999020 + AluJo SINE Alu 1 298 -14 201 237 136 0 chr4 76290295 76290354 -107998308 + MIR SINE MIR 86 152 -110 203 171 0 24 chr4 76290513 76290554 -107998108 + (TG)n Simple_repeat Simple_repeat 1 40 0 309 167 0 0 chr4 76291460 76291538 -107997124 + (CAGA)n Simple_repeat Simple_repeat 4 81 0 180 354 25 0 chr4 76292011 76292090 -107996572 - L2 LINE L2 0 3313 3233 239 214 0 29 chr4 76292124 76292204 -107996458 + (TTATA)n Simple_repeat Simple_repeat 1 77 0 204 282 26 26 chr4 76292277 76292355 -107996307 - L2 LINE L2 -218 3054 2977 186 194 28 0 chr4 76293631 76293667 -107994995 - L2 LINE L2 -8 3305 3269 548 317 54 32 chr4 76293668 76294009 -107994653 - L2 LINE L2 -265 3048 2686 25 31 0 0 chr4 76295318 76295350 -107993312 + AT_rich Low_complexity Low_complexity 1 32 0 681 284 131 3 chr4 76295651 76296054 -107992608 - L1ME3A LINE L1 -297 5873 5415 383 279 52 0 chr4 76296124 76296260 -107992402 - L1ME3A LINE L1 -1429 4717 4575 632 296 118 8 chr4 76296266 76296520 -107992142 - MLT1J2 LTR MaLR -139 311 30 253 298 112 41 chr4 76296522 76296747 -107991915 - L1ME3A LINE L1 -1640 4506 4298 5801 111 23 5 chr4 76296747 76297702 -107990960 - L1PA15 LINE L1 -5 6160 5184 2021 139 23 3 chr4 76297703 76298004 -107990658 - AluJb SINE Alu -5 307 1 253 298 112 41 chr4 76298004 76298386 -107990276 - L1ME3A LINE L1 -1847 4299 3854 5071 192 49 17 chr4 76298392 76299497 -107989165 - L1MC1 LINE L1 0 6316 5248 1817 159 0 7 chr4 76299497 76299812 -107988850 - AluJb SINE Alu 0 315 3 5071 192 49 17 chr4 76299812 76300396 -107988266 - L1MC1 LINE L1 -1068 5248 4576 2147 66 0 0 chr4 76300396 76300654 -107988008 - AluY SINE Alu -16 295 38 5071 192 49 17 chr4 76300654 76300702 -107987960 - L1MC1 LINE L1 -1740 4576 4531 2769 121 33 0 chr4 76300709 76301129 -107987533 + MER57B LTR ERV1 1 434 0 6697 20 0 0 chr4 76301233 76302028 -107986634 + L1PA3 LINE L1 5383 6177 0 1659 234 81 53 chr4 76303245 76303853 -107984809 - MLT1E2 LTR MaLR -1 625 1 264 361 32 19 chr4 76303966 76304121 -107984541 + MIR SINE MIR 99 255 -7 709 281 91 6 chr4 76304179 76304502 -107984160 + MLT1J1 LTR MaLR 58 471 -40 363 158 36 129 chr4 76305287 76305426 -107983236 + MER112 DNA MER1_type 1 126 -134 396 0 0 0 chr4 76305747 76305791 -107982871 + (CA)n Simple_repeat Simple_repeat 2 45 0 272 305 85 49 chr4 76306047 76306211 -107982451 - MIR3 SINE MIR -1 207 38 375 270 61 34 chr4 76306473 76306621 -107982041 - MER5A DNA MER1_type 0 189 38 4713 224 20 45 chr4 76308412 76309763 -107978899 - L1MC1 LINE L1 -1647 4482 3166 296 303 96 20 chr4 76310931 76311357 -107977305 - L1MC1 LINE L1 -3381 2748 2190 2274 89 0 0 chr4 76311357 76311662 -107977000 - AluY SINE Alu 0 305 1 296 303 96 20 chr4 76311662 76311732 -107976930 - L1MC1 LINE L1 -3939 2190 2127 474 274 121 22 chr4 76312050 76312325 -107976337 - L1MC1 LINE L1 -861 1629 1197 1654 221 61 29 chr4 76312371 76312814 -107975848 + MLT1F LTR MaLR 67 523 -19 375 272 117 17 chr4 76312863 76313102 -107975560 - L1MC1 LINE L1 -4895 1224 962 1899 262 143 11 chr4 76313113 76313843 -107974819 - L1ME2 LINE L1 -1 6146 5321 * 22909 98 20 6 chr4 76313837 76318042 -107970620 - L1PA7 LINE L1 -2 6467 2211 9751 99 26 1 chr4 76318035 76319390 -107969272 - L1PA7 LINE L1 -5072 1389 1 * 430 131 29 35 chr4 76319391 76319519 -107969143 - L1ME2 LINE L1 -814 5333 5205 2002 254 146 11 chr4 76319523 76320479 -107968183 - L1ME2 LINE L1 -1050 5079 3995 985 336 68 37 chr4 76320811 76321623 -107967039 - L1ME2 LINE L1 -5279 840 4 251 266 138 11 chr4 76322205 76322299 -107966363 + MIR SINE MIR 157 262 0 28 48 0 0 chr4 76322809 76322851 -107965811 + AT_rich Low_complexity Low_complexity 1 42 0 346 270 78 17 chr4 76323836 76323951 -107964711 + MIR SINE MIR 23 144 -118 596 277 11 6 chr4 76324213 76324390 -107964272 + MER5B DNA MER1_type 1 178 0 484 246 162 12 chr4 76325780 76325947 -107962715 - LTR16A LTR ERVL -8 442 251 292 309 25 0 chr4 76326250 76326331 -107962331 + MIR SINE MIR 9 91 -171 250 200 33 100 chr4 76326457 76326547 -107962115 + MIR SINE MIR 177 260 -2 205 250 188 10 chr4 76326549 76326645 -107962017 - L2 LINE L2 0 3313 3201 278 262 0 0 chr4 76327247 76327308 -107961354 + (CATA)n Simple_repeat Simple_repeat 3 63 0 2324 85 0 25 chr4 76327338 76327656 -107961006 + AluY SINE Alu 1 310 -1 3245 106 20 4 chr4 76327803 76328303 -107960359 + L1MA2 LINE L1 5797 6304 0 24 53 0 0 chr4 76328303 76328341 -107960321 + AT_rich Low_complexity Low_complexity 1 38 0 1842 169 18 0 chr4 76328861 76329163 -107959499 - AluJo SINE Alu 0 307 1 900 216 72 0 chr4 76329175 76329369 -107959293 - MER3 DNA MER1_type 0 209 2 21 36 0 0 chr4 76331113 76331141 -107957521 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr4 76332282 76332318 -107956344 + AT_rich Low_complexity Low_complexity 1 36 0 5425 37 0 0 chr4 76332463 76333106 -107955556 - L1PA5 LINE L1 -3 6151 5509 311 229 108 0 chr4 76333817 76333900 -107954762 + LTR33 LTR ERVL 1 92 -429 317 316 32 59 chr4 76334488 76334675 -107953987 - L2 LINE L2 -8 3305 3124 315 301 89 0 chr4 76334717 76334840 -107953822 + MER94 DNA DNA 1 134 0 180 300 114 0 chr4 76335564 76335634 -107953028 + MIR3 SINE MIR 93 170 -38 431 214 79 42 chr4 76335634 76335849 -107952813 + L1MC5 LINE L1 7638 7860 -101 29 28 0 0 chr4 76335877 76335913 -107952749 + AT_rich Low_complexity Low_complexity 1 36 0 477 252 74 0 chr4 76337301 76337436 -107951226 + MER104 DNA Tc2 18 162 -18 240 278 22 11 chr4 76337928 76338018 -107950644 + (CAGAGA)n Simple_repeat Simple_repeat 2 92 0 22 35 0 0 chr4 76339145 76339174 -107949488 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr4 76340575 76340600 -107948062 + AT_rich Low_complexity Low_complexity 1 25 0 219 250 120 46 chr4 76341184 76341292 -107947370 - MIR3 SINE MIR -7 201 86 40697 41 26 9 chr4 76341608 76342745 -107945917 + L1P LINE L1 3 1119 -5027 2679 13 0 13 chr4 76342745 76343050 -107945612 + AluYa5 SINE Alu 1 301 -10 40697 41 26 9 chr4 76343050 76347076 -107941586 + L1P LINE L1 1119 5254 -892 21 36 0 0 chr4 76348639 76348667 -107939995 + AT_rich Low_complexity Low_complexity 1 28 0 235 300 222 0 chr4 76348894 76348984 -107939678 + L2 LINE L2 3162 3271 -1 26 0 0 0 chr4 76349505 76349531 -107939131 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr4 76349878 76349899 -107938763 + AT_rich Low_complexity Low_complexity 1 21 0 478 281 55 20 chr4 76351098 76351244 -107937418 - MER5A DNA MER1_type -4 185 35 2944 118 9 13 chr4 76351618 76352077 -107936585 - L1PA10 LINE L1 -3 6165 5709 542 274 73 25 chr4 76352571 76352775 -107935887 + MIR SINE MIR 49 262 0 324 227 91 11 chr4 76352981 76353069 -107935593 + MIR SINE MIR 31 125 -137 332 319 52 7 chr4 76353408 76353543 -107935119 - L2 LINE L2 0 3313 3173 528 348 89 8 chr4 76354998 76355234 -107933428 + MIR SINE MIR 6 260 -2 204 330 157 0 chr4 76355982 76356097 -107932565 - MIR SINE MIR -33 229 97 192 396 19 0 chr4 76357083 76357189 -107931473 - L2 LINE L2 -16 3297 3190 201 193 0 35 chr4 76357381 76357438 -107931224 + CT-rich Low_complexity Low_complexity 4 58 0 2236 70 21 3 chr4 76358041 76358328 -107930334 + AluY SINE Alu 1 292 -19 270 244 13 0 chr4 76358968 76359046 -107929616 + L1ME3A LINE L1 1113 1191 -5181 315 319 78 24 chr4 76359131 76359297 -107929365 + L1ME3A LINE L1 1149 1323 -5061 2040 127 0 29 chr4 76359319 76359633 -107929029 + AluSc SINE Alu 1 305 -4 500 263 155 22 chr4 76359694 76360101 -107928561 + L1ME3A LINE L1 1542 2002 -4561 2174 98 35 3 chr4 76360335 76360650 -107928012 + AluSq SINE Alu 1 324 0 2415 257 88 77 chr4 76360650 76361306 -107927356 + L1ME3A LINE L1 2271 2919 -3463 1928 40 8 20 chr4 76361306 76361558 -107927104 - L1PA4 LINE L1 0 6155 5907 2415 257 88 77 chr4 76361558 76363651 -107925011 + L1ME3A LINE L1 2919 5029 -1353 22207 127 17 79 chr4 76363662 76368309 -107920353 + L1PA7 LINE L1 2 4357 -1789 7706 23 0 0 chr4 76368309 76369573 -107919089 + L1PA3 LINE L1 4952 6215 0 3219 34 0 0 chr4 76369866 76370247 -107918415 + L1PA3 LINE L1 5770 6150 -5 6794 99 6 1 chr4 76370259 76372074 -107916588 + L1PA7 LINE L1 4345 6154 0 1711 251 71 25 chr4 76372196 76372882 -107915780 + L1ME3A LINE L1 5610 6327 -79 188 339 0 17 chr4 76372924 76372983 -107915679 + MIR SINE MIR 26 83 -125 * 408 274 13 65 chr4 76372972 76373125 -107915537 + MIR SINE MIR 43 187 -75 804 264 52 24 chr4 76373717 76373967 -107914695 + MIR SINE MIR 4 260 -2 2207 105 0 16 chr4 76374035 76374348 -107914314 + AluSq SINE Alu 1 308 -5 187 347 143 0 chr4 76374605 76374703 -107913959 + L2 LINE L2 3141 3252 -20 496 211 25 141 chr4 76375345 76375544 -107913118 + MER5B DNA MER1_type 1 176 -2 204 207 35 35 chr4 76375632 76375690 -107912972 + (TTAA)n Simple_repeat Simple_repeat 4 61 0 2416 153 77 4 chr4 76375852 76376317 -107912345 - L1MB3 LINE L1 0 6183 5685 1732 240 45 34 chr4 76376400 76376908 -107911754 + MLT1E LTR MaLR 78 591 -2 36 0 0 0 chr4 76377175 76377211 -107911451 + AT_rich Low_complexity Low_complexity 1 36 0 213 39 0 0 chr4 76377238 76377264 -107911398 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 217 214 282 0 chr4 76378030 76378133 -107910529 + MIR SINE MIR 65 196 -66 24 67 0 0 chr4 76379809 76379854 -107908808 + AT_rich Low_complexity Low_complexity 1 45 0 804 298 12 12 chr4 76379913 76380155 -107908507 + MIR SINE MIR 11 252 -10 292 347 111 7 chr4 76381091 76381235 -107907427 + MIR3 SINE MIR 40 198 -10 243 194 30 15 chr4 76381490 76381557 -107907105 - MER3 DNA MER1_type 0 209 142 781 174 7 7 chr4 76381587 76381731 -107906931 - MER3 DNA MER1_type -65 144 1 421 240 173 58 chr4 76384165 76384494 -107904168 + L2 LINE L2 2947 3313 0 2281 79 122 15 chr4 76386598 76386927 -107901735 + THE1B LTR MaLR 1 364 0 271 320 102 0 chr4 76388485 76388613 -107900049 + MIR SINE MIR 88 228 -34 1271 191 27 27 chr4 76388769 76389031 -107899631 - AluJo SINE Alu -13 299 38 228 347 16 8 chr4 76389906 76390030 -107898632 + MIR SINE MIR 138 262 0 5367 201 37 46 chr4 76390109 76391781 -107896881 + L1MC2 LINE L1 4690 6336 -8 369 331 131 23 chr4 76392848 76393198 -107895464 - L2 LINE L2 -785 2529 2142 254 339 9 9 chr4 76393495 76393604 -107895058 - L2 LINE L2 -915 2399 2291 201 195 0 0 chr4 76394570 76394611 -107894051 + GA-rich Low_complexity Low_complexity 2 42 0 206 128 26 0 chr4 76395652 76395691 -107892971 + GA-rich Low_complexity Low_complexity 4 43 0 1903 155 26 9 chr4 76396966 76397308 -107891354 - L1PB4 LINE L1 -15 6141 5794 297 0 0 0 chr4 76397308 76397341 -107891321 + (TG)n Simple_repeat Simple_repeat 2 34 0 445 175 10 21 chr4 76397415 76397429 -107891233 - L1PB4 LINE L1 -359 5797 5784 331 56 37 0 chr4 76397429 76397483 -107891179 + (TA)n Simple_repeat Simple_repeat 1 56 0 445 175 10 21 chr4 76397483 76397565 -107891097 - L1PB4 LINE L1 -372 5784 5702 341 243 108 0 chr4 76397593 76397704 -107890958 - MER112 DNA MER1_type -11 249 127 212 250 109 43 chr4 76397787 76397879 -107890783 - MIR3 SINE MIR -109 99 2 460 313 56 28 chr4 76397934 76398148 -107890514 - L2 LINE L2 0 3313 3094 539 312 34 26 chr4 76398168 76398434 -107890228 - MLT1L LTR MaLR -21 594 327 350 232 232 7 chr4 76398825 76398967 -107889695 - MIR SINE MIR -28 234 61 232 331 163 19 chr4 76400018 76400178 -107888484 + L2 LINE L2 3029 3211 -61 27 0 0 0 chr4 76400202 76400229 -107888433 + AT_rich Low_complexity Low_complexity 1 27 0 543 90 0 0 chr4 76400657 76400735 -107887927 + (TC)n Simple_repeat Simple_repeat 1 78 0 24 53 0 0 chr4 76401139 76401177 -107887485 + AT_rich Low_complexity Low_complexity 1 38 0 228 315 81 9 chr4 76401342 76401453 -107887209 + L2 LINE L2 685 803 -2511 300 311 113 7 chr4 76402136 76402287 -107886375 + L2 LINE L2 854 1020 -2294 316 302 31 38 chr4 76402481 76402640 -107886022 + L1ME LINE L1 5553 5710 -452 383 307 112 37 chr4 76403027 76403277 -107885385 - L2 LINE L2 -133 3180 2896 2018 161 13 24 chr4 76403277 76403655 -107885007 - THE1C LTR MaLR 0 375 2 383 307 112 37 chr4 76403655 76403794 -107884868 - L2 LINE L2 -417 2896 2769 296 346 69 5 chr4 76403796 76403984 -107884678 + L2 LINE L2 1212 1411 -1903 1435 201 32 74 chr4 76403987 76404394 -107884268 + MLT1B LTR MaLR 1 390 0 598 176 88 15 chr4 76404408 76404544 -107884118 - MIR SINE MIR -16 246 101 221 335 67 28 chr4 76404557 76404736 -107883926 + L2 LINE L2 1427 1612 -1702 983 292 119 70 chr4 76404775 76404847 -107883815 + L2 LINE L2 1755 1822 -1492 2358 158 63 47 chr4 76404847 76404986 -107883676 - MLT1D LTR MaLR 0 505 370 1912 127 13 17 chr4 76404986 76405285 -107883377 + AluSx SINE Alu 1 298 -14 2358 158 63 47 chr4 76405285 76405640 -107883022 - MLT1D LTR MaLR -135 370 3 983 292 119 70 chr4 76405640 76406510 -107882152 + L2 LINE L2 1822 2743 -571 225 83 0 0 chr4 76406671 76406707 -107881955 + (TG)n Simple_repeat Simple_repeat 2 37 0 186 316 13 40 chr4 76406812 76406888 -107881774 + L2 LINE L2 3240 3313 0 234 255 0 0 chr4 76408160 76408207 -107880455 + L2 LINE L2 3264 3310 -3 1888 156 0 14 chr4 76408589 76408884 -107879778 + AluJo SINE Alu 1 291 -21 1916 182 91 14 chr4 76409130 76409613 -107879049 - Charlie1b DNA MER1_type -1 522 3 22 0 0 0 chr4 76409736 76409758 -107878904 + AT_rich Low_complexity Low_complexity 1 22 0 201 250 0 0 chr4 76409804 76409848 -107878814 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 246 146 0 0 chr4 76410206 76410247 -107878415 - L2 LINE L2 -4 3309 3269 1949 137 50 25 chr4 76410548 76410912 -107877750 + THE1C LTR MaLR 1 373 -2 9427 130 12 42 chr4 76410917 76412543 -107876119 + THE1C-int LTR MaLR 4 1580 0 1705 128 97 34 chr4 76412543 76412895 -107875767 + THE1C LTR MaLR 1 374 -1 1774 214 78 2 chr4 76413284 76413718 -107874944 - MLT1C LTR MaLR 0 467 1 306 0 0 0 chr4 76413754 76413788 -107874874 + (TGG)n Simple_repeat Simple_repeat 3 36 0 238 401 18 53 chr4 76413993 76414389 -107874273 - L2 LINE L2 -557 2757 2376 476 339 104 50 chr4 76414528 76415145 -107873517 + L2 LINE L2 2325 2974 -340 3395 122 51 138 chr4 76416119 76416967 -107871695 - LTR1 LTR ERV1 0 785 12 482 296 154 47 chr4 76417491 76417664 -107870998 + L2 LINE L2 2563 2716 -597 2357 71 7 0 chr4 76417664 76417961 -107870701 + AluSc SINE Alu 1 299 -10 482 296 154 47 chr4 76417961 76418443 -107870219 + L2 LINE L2 2716 3311 -2 342 288 123 29 chr4 76418472 76418642 -107870020 + L2 LINE L2 3128 3313 0 26 30 0 0 chr4 76418774 76418807 -107869855 + AT_rich Low_complexity Low_complexity 1 33 0 217 248 7 46 chr4 76418815 76418968 -107869694 + (TTAA)n Simple_repeat Simple_repeat 2 148 0 600 227 0 23 chr4 76419169 76419301 -107869361 - FLAM_A SINE Alu -4 129 1 1393 195 95 91 chr4 76419465 76419621 -107869041 + MLT1H LTR MaLR 83 237 -312 11882 79 17 1 chr4 76419621 76422001 -107866661 + L1PA7 LINE L1 3749 6154 0 1393 195 95 91 chr4 76422001 76422165 -107866497 + MLT1H LTR MaLR 237 408 -141 1121 203 91 104 chr4 76422165 76422638 -107866024 - MLT1C LTR MaLR 0 467 1 1393 195 95 91 chr4 76422638 76422778 -107865884 + MLT1H LTR MaLR 408 546 -3 2468 158 29 2 chr4 76423691 76424102 -107864560 - MSTB LTR MaLR 0 426 5 315 294 127 57 chr4 76425665 76425877 -107862785 - MIR SINE MIR -6 256 31 1706 133 19 19 chr4 76426198 76426515 -107862147 + L1MA5 LINE L1 5984 6300 0 736 227 46 67 chr4 76426524 76426762 -107861900 + MIR SINE MIR 20 252 -10 298 257 292 0 chr4 76426943 76427087 -107861575 + MIR SINE MIR 2 187 -75 31 0 0 0 chr4 76427198 76427229 -107861433 + AT_rich Low_complexity Low_complexity 1 31 0 741 199 0 0 chr4 76427306 76427437 -107861225 - FLAM_C SINE Alu -2 131 1 340 352 157 0 chr4 76427479 76427638 -107861024 - MIR SINE MIR -51 211 28 486 47 0 0 chr4 76429548 76429612 -107859050 - L1PA5 LINE L1 -1 6153 6090 2415 156 44 9 chr4 76429857 76430312 -107858350 + L1MB2 LINE L1 5696 6166 -5 5279 156 10 19 chr4 76430313 76431500 -107857162 - L1PB4 LINE L1 0 6156 4973 6454 114 10 22 chr4 76431500 76432546 -107856116 - L1MA3 LINE L1 -1 6304 5272 1919 157 22 11 chr4 76432534 76432890 -107855772 - L1PB4 LINE L1 -1152 4994 4635 * 23 0 0 0 chr4 76432894 76432917 -107855745 + AT_rich Low_complexity Low_complexity 1 23 0 447 233 0 0 chr4 76433857 76433943 -107854719 + MER3 DNA MER1_type 2 87 -122 240 269 0 0 chr4 76433925 76433977 -107854685 - MER3 DNA MER1_type -118 91 40 * 708 279 62 62 chr4 76434125 76434542 -107854120 + LTR16A1 LTR ERVL 73 455 -2 1401 158 63 139 chr4 76434671 76435082 -107853580 + MLT1B LTR MaLR 11 390 0 21 0 0 0 chr4 76435221 76435242 -107853420 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 76436387 76436411 -107852251 + AT_rich Low_complexity Low_complexity 1 24 0 268 303 27 81 chr4 76438609 76438794 -107849868 - MLT1K LTR MaLR -411 177 3 195 186 169 0 chr4 76438918 76438977 -107849685 - L2 LINE L2 -200 3072 3004 269 323 38 32 chr4 76441454 76441640 -107847022 - MARNA DNA Mariner -379 207 21 719 287 10 5 chr4 76441764 76441973 -107846689 + MER63A DNA MER1_type 1 210 0 299 130 19 0 chr4 76443343 76443397 -107845265 + GA-rich Low_complexity Low_complexity 2 56 0 797 271 122 11 chr4 76444363 76444625 -107844037 - L2 LINE L2 0 3313 3023 2519 51 0 3 chr4 76444734 76445046 -107843616 - AluY SINE Alu 0 311 1 13238 211 42 29 chr4 76445062 76450513 -107838149 - L1MA5 LINE L1 0 7002 1443 4925 74 30 2 chr4 76450817 76451456 -107837206 - PABL_A LTR ERV1 -2 658 2 1933 168 0 0 chr4 76451564 76451861 -107836801 + AluSx SINE Alu 1 297 -15 383 219 0 0 chr4 76452421 76452494 -107836168 + MER5A DNA MER1_type 9 81 -108 379 238 245 3 chr4 76452696 76452964 -107835698 - MLT1F LTR MaLR -6 536 218 360 202 58 10 chr4 76454290 76454394 -107834268 + L1MA9 LINE L1 4418 4526 -1620 1532 169 100 0 chr4 76454397 76454687 -107833975 + L1PA16 LINE L1 5825 6143 -23 4239 167 38 2 chr4 76454748 76456004 -107832658 + L1MA9 LINE L1 4491 5793 -498 330 247 41 10 chr4 76456009 76456106 -107832556 - L1MC4 LINE L1 -1339 6703 6604 389 42 56 0 chr4 76456110 76456182 -107832480 + (TA)n Simple_repeat Simple_repeat 1 76 0 2491 153 102 0 chr4 76456184 76456666 -107831996 + L1MA9 LINE L1 5782 6312 0 926 211 6 0 chr4 76456815 76456995 -107831667 - LTR16C LTR ERVL 0 491 311 2262 115 3 0 chr4 76457235 76457540 -107831122 + AluSq SINE Alu 1 306 -7 527 366 21 0 chr4 76458719 76458905 -107829757 - MIR SINE MIR -51 211 22 6964 74 15 4 chr4 76459086 76460385 -107828277 - L1PA8 LINE L1 0 6172 4868 300 154 0 0 chr4 76460379 76460431 -107828231 + L1PA8 LINE L1 4820 4871 -1275 * 341 219 0 9 chr4 76460554 76460659 -107828003 + (TA)n Simple_repeat Simple_repeat 1 104 0 29 60 0 0 chr4 76461255 76461305 -107827357 + AT_rich Low_complexity Low_complexity 1 50 0 1101 223 43 64 chr4 76462489 76462865 -107825797 + MLT1B LTR MaLR 23 390 0 659 300 96 9 chr4 76463900 76464130 -107824532 + MIR SINE MIR 8 257 -5 1246 264 60 51 chr4 76464414 76464610 -107824052 + L2 LINE L2 2493 2686 -627 1184 201 129 33 chr4 76464610 76464943 -107823719 - MLT1A1 LTR MaLR 0 365 1 1246 264 60 51 chr4 76464943 76465282 -107823380 + L2 LINE L2 2686 3041 -272 2114 108 0 10 chr4 76465282 76465579 -107823083 - AluSc SINE Alu -13 296 3 1246 264 60 51 chr4 76465579 76465847 -107822815 + L2 LINE L2 3041 3305 -8 2295 100 3 6 chr4 76469485 76469796 -107818866 - AluSx SINE Alu -2 310 1 299 301 70 51 chr4 76470561 76470717 -107817945 - MIR SINE MIR -6 256 98 345 293 0 28 chr4 76471860 76471966 -107816696 - MER5A DNA MER1_type 0 189 87 197 220 288 34 chr4 76472006 76472124 -107816538 + L2 LINE L2 3091 3238 -75 27 29 0 0 chr4 76473640 76473674 -107814988 + AT_rich Low_complexity Low_complexity 1 34 0 28 0 0 0 chr4 76473839 76473867 -107814795 + AT_rich Low_complexity Low_complexity 1 28 0 1311 258 133 55 chr4 76473920 76474898 -107813764 + HAL1 LINE L1 1336 2389 -118 1864 207 20 0 chr4 76475126 76475484 -107813178 + MER63 DNA MER1_type 696 1060 0 488 58 0 14 chr4 76475536 76475605 -107813057 + (TGGA)n Simple_repeat Simple_repeat 3 70 0 213 286 0 0 chr4 76476133 76476189 -107812473 + MIR SINE MIR 201 256 -6 665 241 139 0 chr4 76476333 76476520 -107812142 + MIR SINE MIR 49 261 -1 2154 225 71 37 chr4 76477119 76477149 -107811513 + MLT1G LTR MaLR 11 39 -551 1869 139 26 45 chr4 76477149 76477530 -107811132 + THE1C LTR MaLR 1 374 -1 10025 126 13 37 chr4 76477530 76479149 -107809513 + THE1C-int LTR MaLR 1 1580 0 1975 147 11 29 chr4 76479149 76479529 -107809133 + THE1C LTR MaLR 1 373 -2 2154 225 71 37 chr4 76479529 76480057 -107808605 + MLT1G LTR MaLR 38 590 0 1982 128 24 0 chr4 76480845 76481133 -107807529 - AluSx SINE Alu -17 295 1 278 205 48 36 chr4 76481247 76481330 -107807332 - MIR SINE MIR -69 193 110 191 290 70 30 chr4 76481455 76481555 -107807107 - MIR SINE MIR -70 192 89 2502 243 108 10 chr4 76481690 76482741 -107805921 - MER69B DNA AcHobo -42 1184 1 365 401 44 18 chr4 76483310 76483537 -107805125 + L3 LINE CR1 39 271 -1306 1405 98 69 16 chr4 76484482 76484727 -107803935 - L1MA4A LINE L1 -22 6281 6024 2237 108 0 3 chr4 76484802 76485098 -107803564 - AluSg1 SINE Alu -14 295 1 353 347 30 12 chr4 76485112 76485279 -107803383 - MIR3 SINE MIR -11 197 28 213 306 102 28 chr4 76485271 76485379 -107803283 - L2 LINE L2 -14 3258 3143 * 916 192 49 25 chr4 76485444 76485647 -107803015 - MER63A DNA MER1_type -1 209 2 252 258 0 15 chr4 76485923 76485989 -107802673 + MIR SINE MIR 182 246 -16 4803 170 18 47 chr4 76486344 76486749 -107801913 + L1MA9 LINE L1 4909 5324 -988 1856 81 4 0 chr4 76486749 76486997 -107801665 - L1PA7 LINE L1 0 6154 5906 4803 170 18 47 chr4 76486997 76487760 -107800902 + L1MA9 LINE L1 5324 6042 -270 1998 138 6 28 chr4 76487760 76488078 -107800584 + AluJo SINE Alu 1 311 -1 4803 170 18 47 chr4 76488078 76488305 -107800357 + L1MA9 LINE L1 6042 6274 -38 417 335 59 24 chr4 76488431 76488685 -107799977 + L3 LINE CR1 468 730 -847 492 169 0 0 chr4 76489616 76489705 -107798957 + L1 LINE L1 4555 4643 -1503 4078 19 0 4 chr4 76489705 76490183 -107798479 - L1PA2 LINE L1 0 6155 5680 432 30 119 30 chr4 76490183 76490228 -107798434 + L1PA2 LINE L1 5619 5673 -482 5442 138 20 3 chr4 76490228 76491760 -107796902 + L1PA15 LINE L1 4628 6165 0 279 329 91 37 chr4 76493709 76493952 -107794710 - L2 LINE L2 -35 3237 2982 271 331 35 7 chr4 76493920 76494062 -107794600 - L2 LINE L2 -823 2491 2346 * 528 302 56 6 chr4 76494096 76494275 -107794387 + MIR SINE MIR 1 188 -74 2336 95 3 0 chr4 76494332 76494628 -107794034 + AluSp SINE Alu 1 297 -16 180 263 40 66 chr4 76495622 76495698 -107792964 + MIR3 SINE MIR 1 74 -134 1383 202 0 0 chr4 76496494 76496746 -107791916 - MER68 LTR ERV1 -7 555 304 274 282 26 0 chr4 76497756 76497834 -107790828 - MIR SINE MIR -27 235 156 22 0 0 0 chr4 76498009 76498031 -107790631 + AT_rich Low_complexity Low_complexity 1 22 0 288 327 55 18 chr4 76499018 76499128 -107789534 + MIR SINE MIR 1 114 -148 672 179 8 0 chr4 76499986 76500103 -107788559 - MER45A DNA AcHobo 0 178 61 2185 127 0 7 chr4 76501193 76501492 -107787170 - AluSx SINE Alu -15 297 1 1761 264 40 41 chr4 76501533 76502161 -107786501 + L1PA10 LINE L1 1 627 -5834 16331 135 14 2 chr4 76502164 76505688 -107782974 + L1PA10 LINE L1 2961 6483 0 22 0 0 0 chr4 76505752 76505774 -107782888 + AT_rich Low_complexity Low_complexity 1 22 0 37 62 0 0 chr4 76505875 76505940 -107782722 + AT_rich Low_complexity Low_complexity 1 65 0 327 49 0 0 chr4 76505947 76505988 -107782674 + (CA)n Simple_repeat Simple_repeat 2 42 0 274 278 52 9 chr4 76506004 76506119 -107782543 + HAL1b LINE L1 1204 1323 -25 230 253 96 36 chr4 76506308 76506391 -107782271 + L2 LINE L2 3179 3266 -6 282 29 0 0 chr4 76507008 76507043 -107781619 + (TG)n Simple_repeat Simple_repeat 2 36 0 2300 101 0 0 chr4 76507289 76507586 -107781076 + AluSx SINE Alu 1 297 -15 4270 160 11 15 chr4 76508760 76509681 -107778981 + L1MB7 LINE L1 5101 6019 -165 204 306 172 45 chr4 76509827 76509984 -107778678 + MIR SINE MIR 15 191 -71 607 141 0 0 chr4 76510138 76510237 -107778425 - L1PB1 LINE L1 -4 6147 6049 368 280 48 24 chr4 76511162 76511287 -107777375 + MIR SINE MIR 6 133 -129 888 212 86 75 chr4 76512277 76512663 -107775999 - MLT1B LTR MaLR 0 390 1 390 371 70 5 chr4 76513431 76513617 -107775045 + MIR SINE MIR 1 198 -64 395 244 17 0 chr4 76514532 76514651 -107774011 - L1ME3A LINE L1 -301 5869 5749 650 173 0 0 chr4 76514665 76514775 -107773887 + U5 snRNA snRNA 4 113 -3 39 50 0 0 chr4 76514780 76514840 -107773822 + AT_rich Low_complexity Low_complexity 1 60 0 230 150 83 0 chr4 76514842 76514902 -107773760 - L1ME3A LINE L1 -416 5746 5682 401 274 57 51 chr4 76514919 76515094 -107773568 + L1ME LINE L1 841 1016 -5054 287 318 61 26 chr4 76515127 76515468 -107773194 + MLT1K LTR MaLR 155 555 -33 584 270 26 26 chr4 76516376 76516602 -107772060 + Charlie8 DNA MER1_type 1 226 -2191 3048 178 32 75 chr4 76517128 76517981 -107770681 - L1PA12 LINE L1 0 6168 5353 * 12728 212 28 18 chr4 76517978 76518230 -107770432 - L1PA13 LINE L1 -2 6218 5970 1754 101 121 38 chr4 76518230 76518576 -107770086 + THE1C LTR MaLR 1 375 0 12728 212 28 18 chr4 76518576 76519004 -107769658 - L1PA13 LINE L1 -250 5970 5548 267 31 0 0 chr4 76519004 76519036 -107769626 + (TTG)n Simple_repeat Simple_repeat 2 33 0 12728 212 28 18 chr4 76519036 76520537 -107768125 - L1PA13 LINE L1 -672 5548 4064 2244 123 12 0 chr4 76520537 76520877 -107767785 - L1PA16 LINE L1 -4 6162 5819 12728 212 28 18 chr4 76520877 76524067 -107764595 - L1PA13 LINE L1 -2156 4064 711 2047 76 3 0 chr4 76524230 76524519 -107764143 - L1PA6 LINE L1 -1141 5005 4716 7205 52 0 0 chr4 76524519 76525667 -107762995 + L1PA6 LINE L1 5007 6154 0 31 0 0 0 chr4 76525667 76525698 -107762964 + AT_rich Low_complexity Low_complexity 1 31 0 455 374 62 36 chr4 76526517 76526934 -107761728 - L1M2 LINE L1 -6412 437 10 1141 258 138 15 chr4 76527064 76527552 -107761110 - MLT1G1 LTR MaLR 0 595 10 232 308 22 22 chr4 76527559 76527650 -107761012 + MER5A DNA MER1_type 54 144 -45 804 266 101 17 chr4 76528081 76528378 -107760284 - LTR16C LTR ERVL -11 480 159 307 247 62 25 chr4 76528583 76528664 -107759998 - MIR SINE MIR -160 102 19 219 289 10 0 chr4 76529801 76529898 -107758764 + (TA)n Simple_repeat Simple_repeat 1 98 0 487 273 19 0 chr4 76530085 76530239 -107758423 + Charlie8 DNA MER1_type 118 274 -2143 293 279 129 43 chr4 76530927 76531067 -107757595 + L2 LINE L2 3162 3313 0 652 280 31 10 chr4 76531648 76531841 -107756821 - MIR SINE MIR -48 214 18 2071 124 137 13 chr4 76533815 76534194 -107754468 + MSTA LTR MaLR 3 428 0 1414 186 36 52 chr4 76534273 76534638 -107754024 - MLT1A2 LTR MaLR -11 363 5 23 54 0 0 chr4 76534892 76534929 -107753733 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr4 76535827 76535862 -107752800 + AT_rich Low_complexity Low_complexity 1 35 0 185 252 26 9 chr4 76536473 76536588 -107752074 + GA-rich Low_complexity Low_complexity 2 118 0 4520 133 23 16 chr4 76537032 76537826 -107750836 + L1PA16 LINE L1 5368 6166 0 358 301 49 16 chr4 76538736 76538859 -107749803 + MER5A DNA MER1_type 54 180 -9 180 111 0 0 chr4 76538872 76538899 -107749763 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 242 315 196 0 chr4 76538899 76538991 -107749671 - L2 LINE L2 -13 3259 3150 2193 94 0 14 chr4 76540281 76540578 -107748084 + AluY SINE Alu 1 293 -18 237 108 0 0 chr4 76540736 76540773 -107747889 + (TG)n Simple_repeat Simple_repeat 2 38 0 563 249 182 22 chr4 76541002 76541227 -107747435 - MIR SINE MIR 0 262 2 430 250 195 8 chr4 76543312 76543440 -107745222 - MER5A DNA MER1_type -6 183 32 411 289 41 16 chr4 76543649 76543770 -107744892 + MIR SINE MIR 21 144 -64 260 276 99 21 chr4 76543918 76544110 -107744552 + L1ME LINE L1 5612 5818 -303 226 268 18 0 chr4 76544335 76544391 -107744271 + MIR3 SINE MIR 149 205 -3 2145 119 0 39 chr4 76545649 76545959 -107742703 + AluSq SINE Alu 1 298 -15 234 239 0 0 chr4 76545960 76546027 -107742635 - HAL1b LINE L1 -35 1313 1247 235 250 29 7 chr4 76546033 76546169 -107742493 + (TA)n Simple_repeat Simple_repeat 2 140 0 393 22 0 0 chr4 76547559 76547605 -107741057 + (CA)n Simple_repeat Simple_repeat 2 47 0 305 285 167 14 chr4 76547911 76548055 -107740607 + MIR SINE MIR 25 190 -72 1035 135 34 216 chr4 76548356 76548801 -107739861 - THE1B LTR MaLR 0 364 1 1753 149 3 78 chr4 76549269 76549591 -107739071 + AluJb SINE Alu 1 298 -14 9401 170 13 7 chr4 76549599 76552878 -107735784 - L1MA3 LINE L1 0 7724 3653 1276 186 0 3 chr4 76552870 76553251 -107735411 - L1M1 LINE L1 -743 5403 5105 * 19451 138 70 8 chr4 76553261 76556672 -107731990 - L1MA3 LINE L1 -3921 3644 24 277 274 45 96 chr4 76556926 76557083 -107731579 + L2 LINE L2 2945 3093 -179 258 265 0 15 chr4 76558281 76558349 -107730313 - Tigger2 DNA MER2_type -10 2708 2642 753 89 0 0 chr4 76558349 76558450 -107730212 + AluSg/x SINE Alu 193 293 -17 907 162 29 54 chr4 76558450 76558654 -107730008 - Tigger2 DNA MER2_type -59 2659 2461 4523 137 12 3 chr4 76558716 76559453 -107729209 - Tigger2 DNA MER2_type -1974 744 1 773 251 26 44 chr4 76559639 76559866 -107728796 - MER58A DNA MER1_type 0 224 2 2068 93 53 26 chr4 76559909 76560211 -107728451 - AluSx SINE Alu -2 310 1 21 0 0 0 chr4 76561479 76561500 -107727162 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr4 76562859 76562886 -107725776 + AT_rich Low_complexity Low_complexity 1 27 0 771 208 19 19 chr4 76563102 76563256 -107725406 - MER63 DNA MER1_type -282 780 1 543 189 144 28 chr4 76563818 76563998 -107724664 - HsTC2 DNA Tc2 -3 1895 1695 348 242 273 8 chr4 76564319 76564447 -107724215 + MER5B DNA MER1_type 17 178 0 25166 60 3 0 chr4 76565008 76568969 -107719693 + L1PA6 LINE L1 2183 6154 0 1749 155 3 46 chr4 76569237 76569560 -107719102 - AluJb SINE Alu -1 311 3 275 216 81 27 chr4 76569746 76569820 -107718842 + MLT1K LTR MaLR 495 572 -16 323 306 65 8 chr4 76569989 76570113 -107718549 + MIR3 SINE MIR 15 145 -63 922 206 144 10 chr4 76570139 76570333 -107718329 - MER58A DNA MER1_type 0 224 5 247 318 0 23 chr4 76570343 76570431 -107718231 + L1MC4a LINE L1 7323 7388 -420 314 307 96 62 chr4 76570569 76570602 -107718060 + L1MC4 LINE L1 7596 7626 -416 1352 192 21 31 chr4 76570602 76570893 -107717769 - AluJo SINE Alu -24 288 1 314 307 96 62 chr4 76570893 76571214 -107717448 + L1MC4 LINE L1 7626 7962 -80 665 63 0 0 chr4 76572800 76572879 -107715783 - MADE1 DNA Mariner 0 80 2 2558 65 0 7 chr4 76574049 76574357 -107714305 + AluY SINE Alu 1 306 -5 2109 133 0 3 chr4 76574370 76574664 -107713998 + AluSg SINE Alu 4 296 -14 401 302 124 22 chr4 76574898 76575123 -107713539 - MIR SINE MIR -12 250 3 403 272 10 0 chr4 76576222 76576325 -107712337 + MIR SINE MIR 159 262 0 249 286 51 41 chr4 76578160 76578258 -107710404 - L2 LINE L2 -7 3306 3208 735 169 22 22 chr4 76578454 76578590 -107710072 + AluJo SINE Alu 1 136 -176 21 0 0 0 chr4 76578693 76578714 -107709948 + AT_rich Low_complexity Low_complexity 1 21 0 491 268 47 8 chr4 76580518 76580645 -107708017 + MIR SINE MIR 20 151 -111 24 32 0 0 chr4 76582469 76582500 -107706162 + AT_rich Low_complexity Low_complexity 1 31 0 520 267 106 23 chr4 76582945 76583189 -107705473 - Charlie8 DNA MER1_type -2216 201 1 927 27 0 0 chr4 76583309 76583419 -107705243 + (GGAA)n Simple_repeat Simple_repeat 3 112 0 244 316 189 10 chr4 76583455 76583661 -107705001 + MIR SINE MIR 12 254 -8 1762 184 3 10 chr4 76585604 76585978 -107702684 + AluJb SINE Alu 3 374 0 2066 111 14 0 chr4 76587016 76587342 -107701320 + AluSx SINE Alu 1 330 0 464 0 18 0 chr4 76588051 76588107 -107700555 + (TGGA)n Simple_repeat Simple_repeat 2 58 0 252 290 0 0 chr4 76589469 76589531 -107699131 + MLT1H LTR MaLR 421 482 -67 481 193 186 62 chr4 76589542 76589687 -107698975 - MER96 DNA MER1_type? -3 172 10 1563 195 36 7 chr4 76590331 76590731 -107697931 - AluJo SINE Alu 0 409 1 925 240 50 92 chr4 76590761 76591088 -107697574 + LTR16A1 LTR ERVL 8 316 -141 2481 130 117 5 chr4 76591088 76591473 -107697189 + MSTA LTR MaLR 1 428 0 925 240 50 92 chr4 76591473 76591545 -107697117 + LTR16A1 LTR ERVL 316 390 -67 868 327 146 49 chr4 76591836 76592319 -107696343 - L3 LINE CR1 -191 1386 951 1947 166 0 3 chr4 76592319 76592627 -107696035 + AluSx SINE Alu 1 307 -5 868 327 146 49 chr4 76592627 76593043 -107695619 - L3 LINE CR1 -626 951 400 476 315 59 27 chr4 76593055 76593274 -107695388 + MIR SINE MIR 10 235 -27 1033 287 206 18 chr4 76593303 76593923 -107694739 - L2 LINE L2 -215 3098 2331 1333 269 53 25 chr4 76593923 76594320 -107694342 - MLT1I LTR MaLR 0 409 2 1033 287 206 18 chr4 76594320 76594408 -107694254 - L2 LINE L2 -982 2331 2261 378 280 32 16 chr4 76594412 76594537 -107694125 - MER69A DNA AcHobo -1 176 50 6196 142 9 13 chr4 76594538 76595800 -107692862 + L1PB1 LINE L1 4398 5657 -494 2445 67 3 0 chr4 76595800 76596098 -107692564 + AluY SINE Alu 1 299 -12 6196 142 9 13 chr4 76596098 76596592 -107692070 + L1PB1 LINE L1 5657 6151 0 255 299 15 0 chr4 76596594 76596661 -107692001 - MER69A DNA AcHobo -108 69 2 329 273 191 16 chr4 76596662 76596845 -107691817 - L2 LINE L2 -1048 2266 2052 279 389 29 11 chr4 76597050 76597225 -107691437 + MIR3 SINE MIR 14 191 -17 1754 188 129 17 chr4 76597565 76597985 -107690677 - MLT1C LTR MaLR 0 467 1 1811 181 80 47 chr4 76597990 76598554 -107690108 + MER39 LTR ERV1 6 707 0 260 349 70 50 chr4 76598583 76598967 -107689695 + L2 LINE L2 2459 2850 -464 316 224 40 180 chr4 76599032 76599260 -107689402 - MER91A DNA MER1_type 0 196 1 3826 47 2 2 chr4 76601155 76601603 -107687059 + LTR7 LTR ERV1 1 448 -2 192 333 42 0 chr4 76602490 76602562 -107686100 - MIR3 SINE MIR -46 162 88 2174 117 3 13 chr4 76603297 76603606 -107685056 - AluSx SINE Alu -6 306 1 961 189 141 4 chr4 76605346 76605647 -107683015 - MER58 DNA MER1_type 0 2420 1 1585 247 82 21 chr4 76605748 76606270 -107682392 + MER74B LTR ERVL 53 606 -16 221 204 0 0 chr4 76606301 76606345 -107682317 + MER5A DNA MER1_type 9 52 -137 261 322 46 0 chr4 76606437 76606524 -107682138 + MIR SINE MIR 14 104 -158 261 0 0 0 chr4 76607341 76607370 -107681292 + (A)n Simple_repeat Simple_repeat 1 29 0 1234 180 28 0 chr4 76608719 76608930 -107679732 - MER2 DNA MER2_type -1 344 128 697 120 26 8 chr4 76608921 76609038 -107679624 - MER2 DNA MER2_type -141 204 86 * 572 176 0 0 chr4 76609146 76609231 -107679431 - MER2 DNA MER2_type -259 86 2 232 305 63 11 chr4 76609395 76609490 -107679172 - L2 LINE L2 -41 3272 3173 1266 138 88 19 chr4 76609801 76610061 -107678601 + LTR1 LTR ERV1 1 278 -507 3036 139 41 61 chr4 76610167 76610394 -107678268 + LTR1 LTR ERV1 210 440 -345 2236 57 0 0 chr4 76610394 76610679 -107677983 + AluY SINE Alu 16 300 0 3036 139 41 61 chr4 76610679 76611038 -107677624 + LTR1 LTR ERV1 440 785 0 193 29 59 0 chr4 76611593 76611627 -107677035 + (TA)n Simple_repeat Simple_repeat 1 36 0 1504 172 40 53 chr4 76613302 76613604 -107675058 + AluJb SINE Alu 1 298 -14 1640 167 7 11 chr4 76614427 76614702 -107673960 - AluJo SINE Alu -30 282 9 2813 29 0 0 chr4 76615489 76615801 -107672861 + AluYb8 SINE Alu 1 312 -6 2483 61 0 22 chr4 76615823 76616134 -107672528 - AluY SINE Alu -7 304 1 1837 153 10 16 chr4 76616134 76616441 -107672221 - AluJo SINE Alu -7 305 1 1633 295 78 44 chr4 76616922 76617967 -107670695 - L1M4 LINE L1 -5448 1094 14 6501 208 54 11 chr4 76618327 76619700 -107668962 + L1PBa LINE L1 4 1435 -5428 1922 113 7 42 chr4 76619800 76620084 -107668578 - AluSx SINE Alu -38 274 1 1174 81 7 0 chr4 76620300 76620449 -107668213 - AluSq SINE Alu -118 195 46 638 103 0 0 chr4 76620450 76620537 -107668125 + AluSp/q SINE Alu 215 301 -12 1674 195 100 49 chr4 76670822 76671008 -107617654 + Charlie1 DNA MER1_type 1779 1954 -807 2079 113 21 0 chr4 76671008 76671290 -107617372 + AluSx SINE Alu 8 295 -17 1674 195 100 49 chr4 76671290 76671575 -107617087 + Charlie1 DNA MER1_type 1954 2274 -487 2395 104 0 0 chr4 76671575 76671883 -107616779 + AluSg SINE Alu 1 308 -2 1561 183 3 14 chr4 76671910 76672195 -107616467 + AluJo SINE Alu 1 282 -30 1991 125 45 3 chr4 76672357 76672646 -107616016 + AluSx SINE Alu 1 301 -11 1106 175 126 44 chr4 76672646 76672960 -107615702 + Charlie1 DNA MER1_type 2342 2695 -66 216 0 0 0 chr4 76672960 76672984 -107615678 + (TAGA)n Simple_repeat Simple_repeat 2 25 0 1106 175 126 44 chr4 76672984 76673057 -107615605 + Charlie1 DNA MER1_type 2695 2761 0 679 220 19 13 chr4 76673062 76673221 -107615441 + L1PB4 LINE L1 5965 6124 -30 324 148 16 0 chr4 76673245 76673306 -107615356 + L1PA16 LINE L1 6091 6152 -14 382 293 20 0 chr4 76673307 76673454 -107615208 + L1MC4a LINE L1 5794 5943 -1865 230 186 57 29 chr4 76673454 76673524 -107615138 + (CATATA)n Simple_repeat Simple_repeat 6 77 0 25 0 0 0 chr4 76673644 76673669 -107614993 + AT_rich Low_complexity Low_complexity 1 25 0 2299 104 0 0 chr4 76675559 76675857 -107612805 + AluSg SINE Alu 3 300 -10 343 293 10 0 chr4 76677824 76677923 -107610739 + MIR3 SINE MIR 63 162 -46 1813 104 4 0 chr4 76678841 76679109 -107609553 + L1P4 LINE L1 5447 5715 -453 2038 151 0 6 chr4 76679374 76679685 -107608977 - AluSx SINE Alu -3 309 1 337 179 0 39 chr4 76681468 76681546 -107607116 + Tigger5 DNA MER2_type 2243 2317 -6 2104 120 7 0 chr4 76682716 76683008 -107605654 - AluSx SINE Alu -18 294 1 360 321 29 43 chr4 76683715 76683855 -107604807 - MIR SINE MIR -110 152 15 464 317 109 6 chr4 76684217 76684400 -107604262 + MIR SINE MIR 18 219 -43 591 232 108 26 chr4 76684517 76684711 -107603951 - MIR SINE MIR -44 218 9 443 288 17 0 chr4 76685151 76685269 -107603393 + L2 LINE L2 3193 3312 -1 287 288 282 6 chr4 76686195 76686358 -107602304 + MIR SINE MIR 2 209 -53 1026 101 3 0 chr4 76686420 76686770 -107601892 + (CA)n Simple_repeat Simple_repeat 1 351 0 1557 174 13 59 chr4 76686772 76687145 -107601517 - MLT1A1 LTR MaLR 0 365 10 450 314 148 7 chr4 76687204 76687487 -107601175 + MLT1I LTR MaLR 85 407 -2 295 192 103 0 chr4 76687493 76687571 -107601091 + MIR SINE MIR 176 261 -1 1344 264 22 22 chr4 76688305 76688722 -107599940 + LTR16B LTR ERVL 34 450 -14 285 125 54 0 chr4 76688761 76688817 -107599845 - MLT2B1 LTR ERVL 0 520 462 207 204 0 0 chr4 76688824 76688868 -107599794 + (TA)n Simple_repeat Simple_repeat 1 44 0 369 93 0 0 chr4 76688897 76688951 -107599711 + (CA)n Simple_repeat Simple_repeat 2 55 0 1142 217 103 54 chr4 76688951 76689380 -107599282 - MLT2B1 LTR ERVL -70 450 1 665 278 71 47 chr4 76689557 76689921 -107598741 - L2 LINE L2 -9 3304 2932 409 325 185 0 chr4 76690657 76690857 -107597805 + MIR SINE MIR 12 248 -14 335 271 102 59 chr4 76691100 76691281 -107597381 - Charlie8 DNA MER1_type -75 266 69 1590 189 40 0 chr4 76691281 76691578 -107597084 + AluJo SINE Alu 3 311 -1 335 271 102 59 chr4 76691578 76691651 -107597011 - Charlie8 DNA MER1_type -272 69 1 24 32 0 0 chr4 76691688 76691719 -107596943 + AT_rich Low_complexity Low_complexity 1 31 0 198 167 0 0 chr4 76694558 76694594 -107594068 + C-rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr4 76695404 76695425 -107593237 + AT_rich Low_complexity Low_complexity 1 21 0 513 304 30 12 chr4 76695567 76695735 -107592927 + MIR SINE MIR 31 201 -61 1284 227 14 48 chr4 76696222 76696575 -107592087 - MER58B DNA MER1_type 0 341 1 197 327 75 9 chr4 76696660 76696767 -107591895 - MIR SINE MIR -147 115 2 3205 221 29 28 chr4 76696927 76697900 -107590762 - L1ME2 LINE L1 -8 6156 5182 2156 124 3 0 chr4 76698179 76698478 -107590184 - AluSc SINE Alu -9 300 1 332 203 98 90 chr4 76698519 76698652 -107590010 + MER94 DNA DNA 1 134 0 2117 107 10 3 chr4 76699737 76700027 -107588635 + AluSx SINE Alu 1 292 -20 2189 100 4 0 chr4 76702449 76702756 -107585906 - AluSg SINE Alu 0 308 1 1285 147 66 135 chr4 76703880 76704027 -107584635 + AluJb SINE Alu 1 114 -198 1717 121 0 124 chr4 76704027 76704350 -107584312 - AluSx SINE Alu -19 283 1 1285 147 66 135 chr4 76704350 76704535 -107584127 + AluJb SINE Alu 114 310 -2 315 104 0 0 chr4 76704711 76704759 -107583903 + L1P LINE L1 5134 5181 -965 522 247 0 0 chr4 76704891 76704988 -107583674 + MER5A DNA MER1_type 4 100 -89 212 111 22 0 chr4 76705267 76705312 -107583350 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 2176 113 0 7 chr4 76705666 76705958 -107582704 + AluSg1 SINE Alu 1 290 -19 281 333 71 0 chr4 76707060 76707159 -107581503 + MIR3 SINE MIR 102 207 -1 436 293 20 34 chr4 76707294 76707441 -107581221 - MIR SINE MIR -115 147 3 1369 186 68 39 chr4 76707742 76708022 -107580640 - AluJo SINE Alu -24 288 1 2050 116 0 7 chr4 76708143 76708437 -107580225 + AluSg SINE Alu 17 308 -2 283 273 18 100 chr4 76711016 76711126 -107577536 - L2 LINE L2 -55 3217 3117 31 58 0 0 chr4 76711705 76711757 -107576905 + AT_rich Low_complexity Low_complexity 1 52 0 669 266 140 34 chr4 76712333 76712626 -107576036 + MLT1K LTR MaLR 195 518 -70 180 275 0 0 chr4 76712745 76712785 -107575877 + L2 LINE L2 3221 3260 -12 1784 154 113 64 chr4 76713116 76713524 -107575138 - MSTA LTR MaLR 0 428 1 229 257 9 57 chr4 76716509 76716614 -107572048 - MIR SINE MIR -3 259 160 183 42 0 0 chr4 76717204 76717228 -107571434 + (GA)n Simple_repeat Simple_repeat 2 25 0 222 310 88 29 chr4 76717742 76717913 -107570749 - L2 LINE L2 -262 3010 2830 193 182 0 0 chr4 76718049 76718082 -107570580 + L2 LINE L2 3188 3220 -93 2379 92 3 0 chr4 76718852 76719158 -107569504 - AluSp SINE Alu -6 307 1 457 280 49 7 chr4 76719167 76719310 -107569352 + MIR3 SINE MIR 54 202 -6 263 262 48 16 chr4 76719474 76719600 -107569062 + MER104 DNA Tc2 19 148 -32 220 185 19 19 chr4 76719852 76719906 -107568756 + (TTA)n Simple_repeat Simple_repeat 1 54 0 387 292 78 0 chr4 76719909 76720063 -107568599 - MER112 DNA MER1_type -1 259 94 2615 83 6 11 chr4 76720084 76720445 -107568217 - L1PA10 LINE L1 0 6168 5810 1961 174 121 0 chr4 76720673 76721053 -107567609 - MSTB LTR MaLR 0 426 1 905 198 0 0 chr4 76721167 76721324 -107567338 + FRAM SINE Alu 2 158 -18 304 188 0 16 chr4 76721325 76721389 -107567273 - MER94 DNA DNA -66 68 6 582 286 103 7 chr4 76721477 76721699 -107566963 - MIR SINE MIR -6 256 14 604 300 22 6 chr4 76721701 76721881 -107566781 + MER5A DNA MER1_type 7 189 0 180 111 0 0 chr4 76725321 76725348 -107563314 + (CATA)n Simple_repeat Simple_repeat 2 28 0 246 204 0 0 chr4 76726046 76726090 -107562572 + L2 LINE L2 3266 3309 -4 514 298 216 58 chr4 76726355 76727030 -107561632 - L3 LINE CR1 -84 1493 712 490 255 35 16 chr4 76727873 76728024 -107560638 + MIR3 SINE MIR 50 201 -7 310 225 246 7 chr4 76728058 76728196 -107560466 - L1ME4a LINE L1 -5 6116 5946 423 0 0 0 chr4 76729055 76729102 -107559560 + (CA)n Simple_repeat Simple_repeat 2 48 0 240 35 0 0 chr4 76729155 76729184 -107559478 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr4 76730100 76730121 -107558541 + AT_rich Low_complexity Low_complexity 1 21 0 2414 176 21 33 chr4 76730193 76730806 -107557856 + pTR5 LTR ERV1 740 1345 -1093 3294 109 254 46 chr4 76730821 76731501 -107557161 + LTR12 LTR ERV1 5 826 0 268 240 177 10 chr4 76731502 76731598 -107557064 + MIR SINE MIR 31 142 -66 1534 173 9 79 chr4 76732046 76732376 -107556286 - AluJb SINE Alu -5 307 1 1642 163 75 3 chr4 76732499 76732848 -107555814 - LTR23 LTR ERV1 -61 376 3 262 236 19 94 chr4 76733271 76733377 -107555285 - MER2 DNA MER2_type -247 98 1 932 276 105 51 chr4 76734448 76734627 -107554035 + L1ME4a LINE L1 5297 5465 -656 1897 130 34 10 chr4 76734627 76734919 -107553743 + AluSx SINE Alu 1 299 -13 932 276 105 51 chr4 76734919 76735519 -107553143 + L1ME4a LINE L1 5465 6118 -3 2519 62 3 0 chr4 76736264 76736572 -107552090 + AluY SINE Alu 1 309 -2 289 327 43 6 chr4 76737049 76737211 -107551451 - L1ME3A LINE L1 -15 6155 5988 814 272 87 30 chr4 76737779 76738056 -107550606 - L1MC5 LINE L1 -60 7901 7641 2569 55 0 10 chr4 76738056 76738365 -107550297 - AluY SINE Alu -5 306 1 814 272 87 30 chr4 76738365 76738779 -107549883 - L1MC5 LINE L1 -320 7641 7260 189 0 0 0 chr4 76738944 76738965 -107549697 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 246 308 15 0 chr4 76739943 76740008 -107548654 - L2 LINE L2 0 3272 3207 23 33 0 0 chr4 76740174 76740204 -107548458 + AT_rich Low_complexity Low_complexity 1 30 0 1488 132 0 5 chr4 76740229 76740434 -107548228 - AluSx SINE Alu -108 204 1 21 0 0 0 chr4 76740658 76740679 -107547983 + AT_rich Low_complexity Low_complexity 1 21 0 295 323 20 10 chr4 76741071 76741170 -107547492 - MIR SINE MIR -6 256 157 254 209 267 0 chr4 76741336 76741422 -107547240 + MIR SINE MIR 154 262 0 1610 158 75 19 chr4 76741665 76741850 -107546812 - MER58B DNA MER1_type -2079 341 129 2297 146 64 12 chr4 76741850 76742255 -107546407 + MSTB LTR MaLR 1 426 0 1610 158 75 19 chr4 76742255 76742391 -107546271 - MER58B DNA MER1_type -2291 129 2 249 286 125 62 chr4 76743544 76743656 -107545006 + L2 LINE L2 3154 3272 0 459 268 45 0 chr4 76743689 76743868 -107544794 - LTR33 LTR ERVL -4 517 331 216 0 0 0 chr4 76743877 76743901 -107544761 + (A)n Simple_repeat Simple_repeat 1 24 0 348 235 112 0 chr4 76743903 76744038 -107544624 - LTR33A LTR ERVL -280 241 68 663 277 24 0 chr4 76744288 76744454 -107544208 + MIR SINE MIR 45 214 -48 1980 151 14 22 chr4 76745587 76745951 -107542711 - MER46B DNA MER2_type 0 236 1 741 252 77 15 chr4 76746151 76746393 -107542269 + MIR SINE MIR 2 262 0 385 309 26 53 chr4 76746410 76746562 -107542100 + L2 LINE L2 3125 3272 0 333 0 0 0 chr4 76747366 76747403 -107541259 + (CA)n Simple_repeat Simple_repeat 2 38 0 974 159 0 37 chr4 76748055 76748218 -107540444 - FRAM SINE Alu -2 174 18 189 107 0 0 chr4 76749043 76749071 -107539591 + (T)n Simple_repeat Simple_repeat 1 28 0 514 273 177 48 chr4 76750350 76750683 -107537979 - L2 LINE L2 -4 3309 2934 493 366 131 19 chr4 76750955 76751321 -107537341 - L2 LINE L2 0 3272 2866 558 315 92 0 chr4 76751333 76751593 -107537069 - LTR33 LTR ERVL -3 518 235 6738 173 109 32 chr4 76751871 76753423 -107535239 - MER52A LTR ERV1 0 1755 1 771 279 66 12 chr4 76753426 76753684 -107534978 - LTR33 LTR ERVL -247 274 3 224 303 188 51 chr4 76753759 76754115 -107534547 - L2 LINE L2 -580 2734 2330 407 262 107 0 chr4 76754190 76754312 -107534350 - MIR SINE MIR -38 224 90 240 429 27 7 chr4 76754524 76754671 -107533991 - L2 LINE L2 -2 3270 3121 848 291 42 0 chr4 76755559 76755800 -107532862 - MIR SINE MIR 0 262 12 26 0 0 0 chr4 76756082 76756108 -107532554 + AT_rich Low_complexity Low_complexity 1 26 0 915 159 173 18 chr4 76757057 76757277 -107531385 - AluJb SINE Alu -45 267 14 361 249 59 51 chr4 76757336 76757540 -107531122 - MER112 DNA MER1_type -1 255 47 2194 123 0 0 chr4 76757540 76757833 -107530829 - AluSq SINE Alu -20 293 1 361 249 59 51 chr4 76757833 76757881 -107530781 - MER112 DNA MER1_type -209 47 1 548 246 11 11 chr4 76757968 76758147 -107530515 + L1ME3A LINE L1 5770 5948 -222 1291 206 48 77 chr4 76758150 76758460 -107530202 - AluJo SINE Alu -11 301 1 3920 41 2 0 chr4 76758747 76759259 -107529403 - L1PA3 LINE L1 -3768 2378 1866 24918 30 0 0 chr4 76759261 76763032 -107525630 + L1PA3 LINE L1 2381 6152 -3 288 0 0 0 chr4 76764263 76764295 -107524367 + (TTA)n Simple_repeat Simple_repeat 2 33 0 183 204 0 0 chr4 76765042 76765091 -107523571 + CT-rich Low_complexity Low_complexity 3 51 0 2279 115 0 3 chr4 76765261 76765565 -107523097 + AluSx SINE Alu 1 303 -9 253 334 132 31 chr4 76765961 76766273 -107522389 - L2 LINE L2 0 3272 2928 380 363 14 0 chr4 76766674 76766820 -107521842 + (TGGG)n Simple_repeat Simple_repeat 2 149 0 3609 70 0 0 chr4 76767249 76767709 -107520953 - L1PA7 LINE L1 -1 6153 5694 448 106 0 0 chr4 76767709 76767775 -107520887 - L1PA7 LINE L1 -889 5257 5192 * 10723 106 5 4 chr4 76767772 76769443 -107519219 + L1P LINE L1 2657 4329 -1817 226 139 0 0 chr4 76769594 76769630 -107519032 + U2 snRNA snRNA 1 36 -152 24 32 0 0 chr4 76770182 76770213 -107518449 + AT_rich Low_complexity Low_complexity 1 31 0 344 277 45 0 chr4 76770490 76770602 -107518060 - MER5B DNA MER1_type -61 117 1 2260 110 3 13 chr4 76770627 76770935 -107517727 - AluSp SINE Alu -8 305 1 388 222 44 0 chr4 76771655 76771745 -107516917 - L2 LINE L2 0 3272 3179 1812 167 30 3 chr4 76771787 76772116 -107516546 + MER2 DNA MER2_type 1 338 -7 219 235 167 37 chr4 76772137 76772299 -107516363 - L2 LINE L2 -167 3146 2964 1712 195 0 3 chr4 76773680 76773972 -107514690 + AluJb SINE Alu 1 291 -21 40 0 0 0 chr4 76775509 76775549 -107513113 + AT_rich Low_complexity Low_complexity 1 40 0 2137 94 11 3 chr4 76775552 76775839 -107512823 - AluSx SINE Alu -20 292 4 208 234 250 0 chr4 76780317 76780381 -107508281 - MIR3 SINE MIR -48 160 81 210 286 36 36 chr4 76780562 76780646 -107508016 + MIR SINE MIR 9 92 -170 267 339 26 58 chr4 76781395 76781584 -107507078 - MIR SINE MIR -78 184 2 279 271 57 36 chr4 76781850 76781990 -107506672 + MER104 DNA Tc2 38 180 0 2314 113 3 0 chr4 76783328 76783637 -107505025 + AluSp SINE Alu 1 310 -3 2131 100 0 0 chr4 76785004 76785351 -107503311 + AluY SINE Alu 2 348 0 222 37 0 0 chr4 76785463 76785490 -107503172 + (A)n Simple_repeat Simple_repeat 1 27 0 1022 200 0 9 chr4 76786410 76786620 -107502042 + MER3 DNA MER1_type 2 209 0 225 241 212 66 chr4 76787357 76787494 -107501168 - MIR3 SINE MIR -18 190 34 264 243 0 0 chr4 76788133 76788207 -107500455 + (TA)n Simple_repeat Simple_repeat 1 74 0 320 250 133 83 chr4 76790437 76790677 -107497985 + L1M2 LINE L1 731 982 -5867 380 299 102 14 chr4 76790882 76791029 -107497633 - L2 LINE L2 -3 3269 3110 321 333 27 0 chr4 76791313 76791424 -107497238 + MIR SINE MIR 73 186 -76 224 259 0 17 chr4 76791802 76791860 -107496802 + MIR SINE MIR 53 109 -153 30202 106 12 54 chr4 76791913 76794013 -107494649 + L1PA7 LINE L1 12 2198 -3956 2257 101 0 14 chr4 76794013 76794310 -107494352 - AluSx SINE Alu -19 293 1 30202 106 12 54 chr4 76794310 76798625 -107490037 + L1PA7 LINE L1 2198 6150 -4 469 305 26 32 chr4 76798881 76799102 -107489560 + MIR SINE MIR 4 223 -39 * 959 187 61 75 chr4 76799096 76799390 -107489272 + L2 LINE L2 3024 3313 0 195 238 48 0 chr4 76799623 76799665 -107488997 - L2 LINE L2 -19 3253 3210 374 229 57 0 chr4 76800078 76800183 -107488479 - MIR SINE MIR -75 187 77 22 0 0 0 chr4 76801325 76801347 -107487315 + AT_rich Low_complexity Low_complexity 1 22 0 181 428 44 13 chr4 76801680 76801839 -107486823 + L3b LINE CR1 1389 1552 -31 287 262 35 145 chr4 76802565 76802737 -107485925 - MIR3 SINE MIR 0 208 56 24 32 0 0 chr4 76803573 76803604 -107485058 + AT_rich Low_complexity Low_complexity 1 31 0 225 188 21 0 chr4 76804940 76804988 -107483674 + CT-rich Low_complexity Low_complexity 3 51 0 219 288 101 11 chr4 76805274 76805386 -107483276 + MIR3 SINE MIR 39 158 -50 5340 45 0 0 chr4 76805710 76806382 -107482280 - L1PA7 LINE L1 -72 6082 5411 3315 92 7 3 chr4 76806379 76806969 -107481693 + L1M4 LINE L1 4908 5500 -684 * 204 300 117 0 chr4 76806978 76807038 -107481624 + L2 LINE L2 3247 3313 0 1713 192 0 7 chr4 76807107 76807481 -107481181 - AluJb SINE Alu 0 372 1 217 348 42 17 chr4 76807818 76807936 -107480726 + L2 LINE L2 2356 2476 -838 2075 113 6 67 chr4 76808245 76808573 -107480089 - AluSq SINE Alu -5 308 1 654 265 28 79 chr4 76809079 76809332 -107479330 - MIR SINE MIR -3 259 20 310 355 96 12 chr4 76809538 76809704 -107478958 + MIR SINE MIR 78 257 -5 402 217 96 102 chr4 76809834 76809905 -107478757 - L1MC4 LINE L1 -151 7891 7821 2292 87 0 0 chr4 76809905 76810192 -107478470 + AluSg SINE Alu 1 287 -23 402 217 96 102 chr4 76810192 76810568 -107478094 - L1MC4 LINE L1 -221 7821 7345 519 256 98 18 chr4 76810733 76810897 -107477765 - MER5B DNA MER1_type -1 177 1 280 361 16 16 chr4 76810900 76811022 -107477640 + L2 LINE L2 3192 3313 0 263 224 84 42 chr4 76811689 76811832 -107476830 + L1MC4a LINE L1 5292 5440 -2368 488 300 89 64 chr4 76811893 76812220 -107476442 + L1MC4a LINE L1 5597 5931 -1877 1154 178 59 20 chr4 76812223 76812425 -107476237 + AluJo SINE Alu 1 210 -102 225 65 0 0 chr4 76812457 76812488 -107476174 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2339 41 0 34 chr4 76813197 76813533 -107475129 - AluY SINE Alu 0 327 2 242 317 28 62 chr4 76813757 76813902 -107474760 + MIR SINE MIR 81 220 -42 284 312 75 0 chr4 76813994 76814087 -107474575 - MIR3 SINE MIR -46 162 63 751 250 65 36 chr4 76865424 76865619 -107423043 + MIR SINE MIR 6 211 -51 833 214 48 29 chr4 76865619 76865825 -107422837 - MER63A DNA MER1_type 0 210 1 751 250 65 36 chr4 76865825 76865877 -107422785 + MIR SINE MIR 211 260 -2 360 327 89 6 chr4 76868338 76868506 -107420156 + MIR SINE MIR 28 209 -53 25 31 0 0 chr4 76868548 76868580 -107420082 + AT_rich Low_complexity Low_complexity 1 32 0 308 258 22 34 chr4 76870228 76870317 -107418345 + L2 LINE L2 3226 3313 0 245 250 62 80 chr4 76870650 76870762 -107417900 + MLT1L LTR MaLR 131 240 -375 2259 102 0 0 chr4 76870792 76871086 -107417576 - AluY SINE Alu -17 294 1 416 269 108 9 chr4 76871191 76871403 -107417259 + MLT1K LTR MaLR 332 564 -24 618 293 108 33 chr4 76871934 76872146 -107416516 - MIR SINE MIR -9 253 26 1916 183 50 88 chr4 76872182 76872637 -107416025 + MLT1D LTR MaLR 1 436 -69 2061 110 0 3 chr4 76872637 76872950 -107415712 - AluSg SINE Alu 0 312 1 1916 183 50 88 chr4 76872950 76873018 -107415644 + MLT1D LTR MaLR 436 505 0 2665 128 29 83 chr4 76873049 76873642 -107415020 - MER34B LTR ERV1 0 565 5 22 56 0 0 chr4 76876406 76876442 -107412220 + AT_rich Low_complexity Low_complexity 1 36 0 2342 99 10 0 chr4 76876447 76876749 -107411913 + AluSq SINE Alu 1 305 -8 930 123 66 75 chr4 76876783 76876995 -107411667 + MER34C LTR ERV1 12 221 -364 1048 153 5 63 chr4 76877014 76877237 -107411425 + MER34C LTR ERV1 376 585 0 27 29 0 0 chr4 76877365 76877399 -107411263 + AT_rich Low_complexity Low_complexity 1 34 0 1540 143 0 4 chr4 76877542 76877772 -107410890 + AluSg/x SINE Alu 68 296 -16 21 0 0 0 chr4 76878533 76878554 -107410108 + AT_rich Low_complexity Low_complexity 1 21 0 354 322 28 0 chr4 76878983 76879126 -107409536 - MER103 DNA DNA -1 165 19 194 244 77 13 chr4 76879676 76879754 -107408908 - L2 LINE L2 -8 3305 3223 494 280 113 72 chr4 76881124 76881499 -107407163 + HAL1 LINE L1 130 535 -1972 1704 150 61 25 chr4 76881499 76881825 -107406837 + MER44D DNA MER2_type 1 608 -1 494 280 113 72 chr4 76881825 76881991 -107406671 + HAL1 LINE L1 535 693 -1814 739 206 79 13 chr4 76882623 76882962 -107405700 - MER31B LTR ERV1 -4 510 33 247 238 0 12 chr4 76882980 76883060 -107405602 + HAL1 LINE L1 1041 1119 -1388 21 57 0 0 chr4 76883261 76883296 -107405366 + AT_rich Low_complexity Low_complexity 1 35 0 1765 165 69 98 chr4 76884429 76884949 -107403713 - MLT1D LTR MaLR 0 505 1 2105 133 144 5 chr4 76885405 76885781 -107402881 + MSTA LTR MaLR 1 428 0 8623 181 23 19 chr4 76885781 76887368 -107401294 + MSTA-int LTR MaLR 1 1596 -55 2128 132 0 7 chr4 76887368 76887664 -107400998 - AluSx SINE Alu -18 294 1 8623 181 23 19 chr4 76887664 76887721 -107400941 + MSTA-int LTR MaLR 1596 1651 0 1926 155 139 16 chr4 76887721 76888102 -107400560 + MSTA LTR MaLR 1 428 0 481 290 21 21 chr4 76888114 76888259 -107400403 - MER5A DNA MER1_type -7 182 38 1092 277 60 22 chr4 76888298 76888797 -107399865 - LTR33 LTR ERVL -2 519 2 327 287 0 11 chr4 76889591 76889685 -107398977 + MIR SINE MIR 21 113 -95 34 0 0 0 chr4 76890481 76890515 -107398147 + AT_rich Low_complexity Low_complexity 1 34 0 448 218 50 0 chr4 76890518 76890619 -107398043 + L1M1 LINE L1 17 122 -7443 * 7428 217 21 62 chr4 76890607 76892767 -107395895 + L1M1 LINE L1 3133 5104 -2461 1092 230 35 9 chr4 76892767 76892997 -107395665 + AluJb SINE Alu 1 236 -76 7428 217 21 62 chr4 76892997 76894578 -107394084 + L1M1 LINE L1 5104 6749 -816 546 184 16 0 chr4 76894565 76894690 -107393972 + L1P LINE L1 4922 5048 -1098 * 214 197 76 30 chr4 76894832 76894898 -107393764 + MIR SINE MIR 97 165 -97 205 146 0 73 chr4 76895529 76895584 -107393078 + (TAAAA)n Simple_repeat Simple_repeat 2 52 0 2224 105 13 7 chr4 76896429 76896734 -107391928 + AluSc SINE Alu 2 308 -1 670 291 17 0 chr4 76898030 76898205 -107390457 - MER45A DNA AcHobo 0 178 1 198 91 0 0 chr4 76898442 76898475 -107390187 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 896 273 105 44 chr4 76898966 76899395 -107389267 - MLT1L LTR MaLR -1 614 160 409 244 0 0 chr4 76899874 76899952 -107388710 + MER81 DNA DNA 1 78 -36 1955 129 23 10 chr4 76901005 76901449 -107387213 - L1MA5A LINE L1 -689 5608 5159 3825 126 22 21 chr4 76901449 76902115 -107386547 + L1MA5A LINE L1 5630 6297 0 337 316 92 24 chr4 76902921 76903127 -107385535 - MIR SINE MIR -13 249 30 4637 85 5 6 chr4 76903136 76903780 -107384882 - L1PA8 LINE L1 -6 6166 5524 465 300 65 65 chr4 76905486 76906059 -107382603 + L1MEd LINE L1 246 818 -5301 432 280 75 30 chr4 76906189 76906220 -107382442 - L2 LINE L2 -133 3180 3152 1837 159 70 19 chr4 76906220 76906591 -107382071 - MLT1B LTR MaLR 0 390 1 432 280 75 30 chr4 76906591 76906759 -107381903 - L2 LINE L2 -161 3152 2972 930 274 55 24 chr4 76906781 76907201 -107381461 + L1ME3 LINE L1 5435 5867 -295 225 65 0 0 chr4 76907281 76907312 -107381350 + (CA)n Simple_repeat Simple_repeat 1 31 0 2336 92 0 0 chr4 76907939 76908231 -107380431 - AluSx SINE Alu -8 304 13 198 312 139 46 chr4 76908466 76908639 -107380023 - MIR SINE MIR -56 206 18 246 170 0 0 chr4 76909576 76909623 -107379039 - MER58A DNA MER1_type -4 220 174 2290 99 3 0 chr4 76909624 76909918 -107378744 - AluSp SINE Alu -18 295 1 204 67 0 0 chr4 76909978 76910008 -107378654 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 491 186 196 0 chr4 76910018 76910120 -107378542 - FLAM_A SINE Alu -11 122 1 631 271 0 0 chr4 76910123 76910263 -107378399 - MER58A DNA MER1_type 0 140 1 537 324 41 18 chr4 76910323 76910542 -107378120 - MIR SINE MIR -21 241 18 1247 296 89 43 chr4 76910642 76911654 -107377008 - L2 LINE L2 0 3272 2212 380 279 6 70 chr4 76911654 76911790 -107376872 - MLT1L LTR MaLR 0 615 491 2343 96 3 0 chr4 76911790 76912091 -107376571 - AluSq SINE Alu -11 302 1 380 279 6 70 chr4 76912091 76912126 -107376536 - MLT1L LTR MaLR -124 491 455 185 211 19 0 chr4 76912230 76912282 -107376380 + GA-rich Low_complexity Low_complexity 2 54 0 235 176 0 39 chr4 76912459 76912510 -107376152 - MLT1K LTR MaLR -342 246 198 254 226 129 57 chr4 76912559 76912683 -107375979 - L2 LINE L2 -1063 2251 2119 267 372 54 16 chr4 76913024 76913153 -107375509 + L2 LINE L2 3122 3255 -17 999 151 78 19 chr4 76913342 76913547 -107375115 + MER20 DNA MER1_type 1 217 -2 1506 175 68 15 chr4 76913704 76914030 -107374632 - MER2 DNA MER2_type 0 344 2 279 359 33 19 chr4 76916460 76916672 -107371990 - L2 LINE L2 -1293 2021 1807 7589 93 20 1 chr4 76916772 76918023 -107370639 - L1PA8A LINE L1 -665 5466 4193 658 101 0 0 chr4 76918023 76918122 -107370540 - L1PA8A LINE L1 -2158 3988 3890 2091 154 3 0 chr4 76918612 76918923 -107369739 + AluSx SINE Alu 1 312 0 198 0 0 0 chr4 76918929 76918951 -107369711 + (GAAAA)n Simple_repeat Simple_repeat 3 24 0 401 297 80 48 chr4 76920849 76921098 -107367564 - L1MC4a LINE L1 -1753 6055 5799 284 274 20 10 chr4 76921175 76921277 -107367385 + (TA)n Simple_repeat Simple_repeat 1 103 0 228 67 0 0 chr4 76921316 76921346 -107367316 + (CA)n Simple_repeat Simple_repeat 2 31 0 2460 43 10 16 chr4 76922606 76922911 -107365751 + AluY SINE Alu 1 303 -8 288 53 0 0 chr4 76923036 76923074 -107365588 + (TG)n Simple_repeat Simple_repeat 2 39 0 242 284 80 0 chr4 76923492 76923580 -107365082 - L1MC4a LINE L1 -525 5596 5502 825 203 0 110 chr4 76923622 76923675 -107364987 - MER58A DNA MER1_type -2212 208 151 1767 153 21 17 chr4 76923675 76923963 -107364699 - AluJb SINE Alu -23 289 1 825 203 0 110 chr4 76923963 76924136 -107364526 - MER58A DNA MER1_type -2269 151 7 237 132 0 0 chr4 76924210 76924248 -107364414 + (TG)n Simple_repeat Simple_repeat 2 39 0 382 193 84 0 chr4 76924421 76924504 -107364158 - MIR SINE MIR -60 202 113 260 217 158 48 chr4 76925787 76925922 -107362740 + MIR SINE MIR 43 192 -59 356 0 23 0 chr4 76926446 76926488 -107362174 + (TG)n Simple_repeat Simple_repeat 1 87 0 356 0 23 0 chr4 76926488 76926532 -107362130 + (TG)n Simple_repeat Simple_repeat 2 46 0 308 277 0 43 chr4 76926656 76926699 -107361963 + L1MC4 LINE L1 6614 6657 -1385 1107 134 0 0 chr4 76926699 76926878 -107361784 + (TA)n Simple_repeat Simple_repeat 2 180 0 308 277 0 43 chr4 76926878 76926928 -107361734 + L1MC4 LINE L1 6657 6703 -1339 319 78 20 0 chr4 76926936 76926987 -107361675 + MLT2B1 LTR ERVL 467 518 -2 279 250 0 25 chr4 76927310 76927390 -107361272 + MER116 DNA Mariner 3 80 0 414 0 0 0 chr4 76927627 76927673 -107360989 + (TG)n Simple_repeat Simple_repeat 2 47 0 1548 217 18 12 chr4 76927677 76928059 -107360603 - MLT2D LTR ERVL -20 534 5 24 53 0 0 chr4 76928140 76928178 -107360484 + AT_rich Low_complexity Low_complexity 1 38 0 1565 144 18 43 chr4 76929586 76929863 -107358799 - AluJo SINE Alu -13 299 30 234 200 80 0 chr4 76930452 76930527 -107358135 + MLT1K LTR MaLR 508 588 0 25 0 0 0 chr4 76930600 76930625 -107358037 + AT_rich Low_complexity Low_complexity 1 25 0 883 225 51 51 chr4 76931454 76931765 -107356897 + MLT2C1 LTR ERVL 1 311 -86 318 181 28 14 chr4 76931830 76931902 -107356760 - MLT2F LTR ERVL 0 663 591 2116 140 102 13 chr4 76932411 76932804 -107355858 - MSTA LTR MaLR 0 428 1 280 336 102 8 chr4 76933336 76933464 -107355198 + L2 LINE L2 2719 2858 -456 5402 136 50 14 chr4 76935172 76936607 -107352055 + L1MA8 LINE L1 4776 6261 -30 472 241 88 122 chr4 76937106 76937425 -107351237 - MLT1J1 LTR MaLR -125 321 14 192 308 0 39 chr4 76937508 76937586 -107351076 + MER5B DNA MER1_type 1 75 -103 483 300 6 35 chr4 76938028 76938198 -107350464 + MER5B DNA MER1_type 1 165 -13 3433 83 0 4 chr4 76938756 76939223 -107349439 - Charlie3 DNA MER1_type -4 2706 2242 3205 127 27 2 chr4 76939217 76939705 -107348957 - Charlie3 DNA MER1_type -2210 500 1 * 337 313 163 17 chr4 76939811 76940044 -107348618 + L2 LINE L2 3003 3269 -3 286 347 48 16 chr4 76941324 76941448 -107347214 - L2 LINE L2 0 3272 3145 1722 244 58 14 chr4 76944308 76944891 -107343771 + L1ME3 LINE L1 5552 6160 -2 693 252 7 9 chr4 76945422 76945585 -107343077 - MIR SINE MIR -18 190 29 47 61 0 0 chr4 76945628 76945710 -107342952 + AT_rich Low_complexity Low_complexity 1 82 0 249 330 0 0 chr4 76947614 76947705 -107340957 + A-rich Low_complexity Low_complexity 1 91 0 22 35 0 0 chr4 76948133 76948162 -107340500 + AT_rich Low_complexity Low_complexity 1 29 0 1900 128 41 7 chr4 76948610 76948900 -107339762 + AluSx SINE Alu 3 302 -10 23 68 0 0 chr4 76949139 76949183 -107339479 + AT_rich Low_complexity Low_complexity 1 44 0 923 260 8 39 chr4 76949294 76949552 -107339110 + MIR SINE MIR 13 262 0 895 241 157 48 chr4 76949556 76949950 -107338712 + L2 LINE L2 2868 3304 -9 566 165 78 0 chr4 76949955 76950058 -107338604 + FLAM_A SINE Alu 6 116 -26 363 23 0 0 chr4 76950061 76950105 -107338557 + (CA)n Simple_repeat Simple_repeat 2 45 0 228 217 0 0 chr4 76950168 76950214 -107338448 - L3b LINE CR1 -2 1581 1536 519 305 72 0 chr4 76950860 76951027 -107337635 - MER8 DNA MER2_type -60 179 1 325 150 0 0 chr4 76951960 76952020 -107336642 + L1ME3 LINE L1 6095 6154 -8 287 274 16 0 chr4 76952726 76952788 -107335874 - L2 LINE L2 -10 3262 3200 619 313 61 19 chr4 76953132 76953346 -107335316 - MIR SINE MIR -38 224 2 230 306 23 23 chr4 76955304 76955391 -107333271 + MIR SINE MIR 67 152 -65 335 320 135 6 chr4 76955917 76956073 -107332589 - L2 LINE L2 0 3272 3097 785 316 8 8 chr4 76956084 76956328 -107332334 + MIR SINE MIR 19 262 0 2990 142 66 32 chr4 76956740 76957330 -107331332 - MER4B LTR ERV1 0 610 1 2507 52 0 0 chr4 76957615 76957906 -107330756 + AluY SINE Alu 1 291 -20 2257 98 0 3 chr4 76958465 76958771 -107329891 - AluY SINE Alu -6 305 1 241 332 94 11 chr4 76958800 76959065 -107329597 + L2 LINE L2 1488 1774 -1540 1366 337 83 46 chr4 76959226 76960543 -107328119 + L2 LINE L2 1838 3272 0 513 330 87 32 chr4 76960552 76960864 -107327798 + L3 LINE CR1 665 993 -584 242 302 16 0 chr4 76960978 76961041 -107327621 + L3 LINE CR1 1031 1094 -483 755 304 85 0 chr4 76961104 76961328 -107327334 - MIR SINE MIR 0 262 20 261 322 36 67 chr4 76961296 76961687 -107326975 + L3 LINE CR1 1130 1570 -7 * 2283 111 0 22 chr4 76961687 76962003 -107326659 - AluSg SINE Alu -1 309 1 24 53 0 0 chr4 76962109 76962147 -107326515 + AT_rich Low_complexity Low_complexity 1 38 0 22 80 0 0 chr4 76962641 76962691 -107325971 + AT_rich Low_complexity Low_complexity 1 50 0 287 331 127 6 chr4 76963264 76963421 -107325241 - MIR SINE MIR -86 176 1 245 235 18 131 chr4 76963969 76964183 -107324479 - L1MC/D LINE L1 -333 5829 5681 258 370 9 0 chr4 76965114 76965222 -107323440 + L2 LINE L2 3202 3310 -3 768 216 0 57 chr4 76965469 76965663 -107322999 - MER20 DNA MER1_type -30 189 7 2276 103 3 0 chr4 76966958 76967259 -107321403 - AluSx SINE Alu -10 302 1 682 278 25 40 chr4 76967366 76967719 -107320943 - LTR16A LTR ERVL -1 449 60 2760 171 12 10 chr4 76968200 76968703 -107319959 - MLT2B2 LTR ERVL -11 504 1 1808 161 3 36 chr4 76969087 76969391 -107319271 - AluJo SINE Alu -18 294 1 212 209 0 0 chr4 76970564 76970607 -107318055 - L2 LINE L2 -1 3312 3270 934 232 5 0 chr4 76971334 76971519 -107317143 - MER5A DNA MER1_type 0 189 4 2294 107 0 0 chr4 76971703 76972001 -107316661 - AluSq SINE Alu -15 298 1 272 272 141 0 chr4 76972030 76972122 -107316540 - MIR SINE MIR -86 176 72 2347 92 0 0 chr4 76972552 76972846 -107315816 + AluSg SINE Alu 1 294 -16 2058 111 6 44 chr4 76972869 76973184 -107315478 + L1PB4 LINE L1 5852 6154 -2 193 308 48 116 chr4 76973362 76973508 -107315154 + L2 LINE L2 3137 3272 0 211 279 29 15 chr4 76973514 76973582 -107315080 + GA-rich Low_complexity Low_complexity 4 72 0 1753 182 37 82 chr4 76973631 76974078 -107314584 + MLT1C LTR MaLR 3 469 79 2023 128 17 7 chr4 76974078 76974376 -107314286 + AluSq SINE Alu 1 301 -12 2235 117 0 0 chr4 76974377 76974684 -107313978 + AluSx SINE Alu 1 307 -5 1753 182 37 82 chr4 76974684 76974718 -107313944 + MLT1C LTR MaLR 356 390 0 1864 176 11 56 chr4 76974742 76975099 -107313563 - MER58B DNA MER1_type 0 341 1 364 276 107 0 chr4 76976417 76976557 -107312105 + MIR SINE MIR 34 188 -63 1666 168 0 0 chr4 76976838 76977094 -107311568 - AluSx SINE Alu -56 256 1 687 139 0 0 chr4 76977219 76977334 -107311328 + (CA)n Simple_repeat Simple_repeat 2 116 0 225 284 105 32 chr4 76978371 76978466 -107310196 - L2 LINE L2 -3 3269 3168 1839 165 3 10 chr4 76978714 76979017 -107309645 - AluJb SINE Alu -11 301 1 21 71 0 0 chr4 76979051 76979093 -107309569 + AT_rich Low_complexity Low_complexity 1 42 0 582 334 83 37 chr4 76979131 76979586 -107309076 + L2 LINE L2 2189 2664 -650 312 293 194 57 chr4 76979765 76980111 -107308551 + L2 LINE L2 2875 3272 0 358 356 45 27 chr4 76980134 76980356 -107308306 - L2 LINE L2 -1061 2253 2028 500 307 43 0 chr4 76980476 76980616 -107308046 + L2 LINE L2 3126 3271 -1 26 0 0 0 chr4 76981711 76981737 -107306925 + AT_rich Low_complexity Low_complexity 1 26 0 332 303 84 51 chr4 76982162 76982340 -107306322 + MIR SINE MIR 75 258 -4 1930 130 61 0 chr4 76982377 76982670 -107305992 + AluSx SINE Alu 1 311 -1 375 218 15 60 chr4 76982797 76982930 -107305732 - MER104 DNA Tc2 -51 129 3 3988 167 55 30 chr4 76983568 76984328 -107304334 + MER4E LTR ERV1 1 779 0 459 261 110 0 chr4 76984369 76984514 -107304148 - MIR3 SINE MIR -10 198 41 235 281 12 0 chr4 76984624 76984706 -107303956 + HAL1 LINE L1 1950 2032 -475 288 238 0 0 chr4 76984730 76984793 -107303869 - MIR SINE MIR -87 175 113 438 269 47 86 chr4 76984803 76985058 -107303604 + HAL1 LINE L1 2040 2269 -238 1805 155 7 14 chr4 76985058 76985354 -107303308 + AluJo SINE Alu 1 294 -18 438 269 47 86 chr4 76985354 76985585 -107303077 + HAL1 LINE L1 2269 2507 0 962 253 153 27 chr4 76985940 76986312 -107302350 + LTR16A LTR ERVL 17 435 -15 31 68 0 0 chr4 76986497 76986556 -107302106 + AT_rich Low_complexity Low_complexity 1 59 0 256 292 43 56 chr4 76986846 76987007 -107301655 - L2 LINE L2 -245 3027 2869 1918 153 20 168 chr4 76987380 76987916 -107300746 + LTR32 LTR ERVL 15 471 0 21 0 0 0 chr4 76987926 76987947 -107300715 + AT_rich Low_complexity Low_complexity 1 21 0 1419 271 49 57 chr4 76988370 76988986 -107299676 + Tigger8 DNA MER2_type 47 657 -9 1890 153 0 0 chr4 76989761 76990146 -107298516 + AluSq SINE Alu 13 313 0 2356 102 3 0 chr4 76990219 76990524 -107298138 - AluSg SINE Alu -4 306 1 2118 152 72 26 chr4 76991833 76992181 -107296481 - THE1B LTR MaLR 0 364 1 12595 86 10 2 chr4 76992181 76993747 -107294915 - THE1B-int LTR MaLR 0 1580 2 2169 88 68 120 chr4 76993748 76993963 -107294699 - THE1B LTR MaLR 0 364 176 2341 104 3 0 chr4 76993963 76994261 -107294401 - AluSc SINE Alu -10 299 1 2169 88 68 120 chr4 76994261 76994429 -107294233 - THE1B LTR MaLR -188 176 1 1738 158 18 0 chr4 76995534 76995807 -107292855 - AluJo SINE Alu -14 298 21 250 307 80 12 chr4 76996039 76996202 -107292460 + L2 LINE L2 2216 2389 -925 3816 108 12 4 chr4 76996671 76997178 -107291484 - MER9 LTR ERVK 0 511 1 201 196 0 43 chr4 76997476 76997522 -107291140 + GA-rich Low_complexity Low_complexity 3 46 0 250 281 0 0 chr4 76997671 76997735 -107290927 - HsTC2 DNA Tc2 -1 1897 1834 635 250 117 6 chr4 76998132 76998312 -107290350 - MIR SINE MIR -61 201 2 3646 157 5 19 chr4 76998771 76999363 -107289299 + L1MA3 LINE L1 667 1250 -6315 11158 146 17 14 chr4 76999506 77002577 -107286085 + L1MA3 LINE L1 4642 7724 0 278 237 32 86 chr4 77003507 77003600 -107285062 - MIR3 SINE MIR -13 195 108 327 374 109 42 chr4 77003920 77004324 -107284338 + L2 LINE L2 2842 3272 0 1655 155 51 75 chr4 77005344 77005718 -107282944 - MLT1A1 LTR MaLR 0 365 1 569 169 0 0 chr4 77005806 77005889 -107282773 + AluJ/FLAM SINE Alu 2 84 -228 543 284 34 6 chr4 77006028 77006204 -107282458 + L3 LINE CR1 1288 1468 -109 1478 234 63 16 chr4 77007220 77007648 -107281014 + L1ME2 LINE L1 4651 5098 -1048 872 244 77 8 chr4 77007643 77007889 -107280773 + L1ME2 LINE L1 5300 5562 -602 * 526 214 76 8 chr4 77007890 77008021 -107280641 - MER63A DNA MER1_type 0 210 71 234 162 0 0 chr4 77008102 77008139 -107280523 - MER63A DNA MER1_type -173 37 1 244 175 159 32 chr4 77008139 77008202 -107280460 + L1ME2 LINE L1 5556 5626 -707 1371 224 40 32 chr4 77008203 77008583 -107280079 + L1ME2 LINE L1 5669 6051 -113 383 182 0 0 chr4 77008585 77008651 -107280011 + MLT1A1 LTR MaLR 1 66 -299 1470 189 12 133 chr4 77008651 77008845 -107279817 + MER101 LTR ERV1 11 112 -362 8212 173 113 48 chr4 77008845 77010417 -107278245 + MER52A LTR ERV1 1 1686 -69 2096 158 0 0 chr4 77010417 77010728 -107277934 + AluSx SINE Alu 1 311 -1 8212 173 113 48 chr4 77010728 77010803 -107277859 + MER52A LTR ERV1 1686 1755 0 1470 189 12 133 chr4 77010803 77011096 -107277566 + MER101 LTR ERV1 112 439 -35 1258 211 41 14 chr4 77011129 77011423 -107277239 + MLT1A1 LTR MaLR 63 364 -1 268 189 19 0 chr4 77011460 77011513 -107277149 + L1ME2 LINE L1 6085 6138 -26 2181 126 3 0 chr4 77011544 77011837 -107276825 + AluSp SINE Alu 2 295 -18 291 219 30 146 chr4 77011868 77012101 -107276561 + L1MC4 LINE L1 7832 8037 -5 758 275 6 0 chr4 77012155 77012333 -107276329 - MIR SINE MIR -13 249 71 831 228 42 0 chr4 77012525 77012692 -107275970 - MER45A DNA AcHobo -4 174 1 438 289 39 0 chr4 77014688 77014816 -107273846 + MIR SINE MIR 124 256 -6 563 296 91 27 chr4 77015232 77015452 -107273210 + MIR SINE MIR 11 244 -18 450 200 248 21 chr4 77015924 77016069 -107272593 - MER5A DNA MER1_type -6 183 6 2371 105 0 0 chr4 77016313 77016619 -107272043 - AluSx SINE Alu -6 306 1 1039 298 97 19 chr4 77016640 77017063 -107271599 - L2 LINE L2 -22 3291 2836 189 0 0 0 chr4 77017936 77017957 -107270705 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 774 290 121 23 chr4 77017966 77018438 -107270224 + L2 LINE L2 2748 3313 0 471 242 219 37 chr4 77019029 77019244 -107269418 - MER102b DNA MER1_type -3 338 85 1719 167 0 32 chr4 77019976 77020287 -107268375 + AluJb SINE Alu 1 301 -11 33 0 0 0 chr4 77023230 77023263 -107265399 + AT_rich Low_complexity Low_complexity 1 33 0 207 204 0 0 chr4 77023473 77023522 -107265140 + CT-rich Low_complexity Low_complexity 5 53 0 575 297 57 0 chr4 77023530 77023722 -107264940 - LTR16A LTR ERVL -6 444 242 252 265 31 80 chr4 77023761 77023923 -107264739 - LTR16A LTR ERVL -286 164 11 222 118 0 0 chr4 77023939 77023973 -107264689 + (TTCCC)n Simple_repeat Simple_repeat 1 34 0 5747 123 8 3 chr4 77024186 77026244 -107262418 + L1PA16 LINE L1 4078 6153 -13 463 297 59 36 chr4 77026556 77026775 -107261887 - MIR SINE MIR -31 231 8 566 283 122 13 chr4 77026901 77027138 -107261524 + MLT1J2 LTR MaLR 188 450 0 279 399 37 12 chr4 77027169 77027332 -107261330 - L2 LINE L2 0 3272 3106 208 340 93 31 chr4 77028091 77028188 -107260474 + L2 LINE L2 3134 3236 -36 7122 49 8 1 chr4 77028353 77029422 -107259240 + L1PA6 LINE L1 5078 6152 -2 400 214 37 76 chr4 77029424 77029578 -107259084 + MIR SINE MIR 19 172 -58 578 286 120 28 chr4 77030407 77030624 -107258038 + MIR SINE MIR 10 246 -16 1673 200 3 0 chr4 77031252 77031537 -107257125 - AluJo SINE Alu -26 286 1 2148 233 63 108 chr4 77031954 77033607 -107255055 + HAL1 LINE L1 641 2218 -289 255 206 0 65 chr4 77033680 77033772 -107254890 + HAL1 LINE L1 2416 2501 -6 373 368 28 24 chr4 77035580 77035833 -107252829 + L2 LINE L2 2825 3078 -194 1737 113 13 33 chr4 77035907 77036209 -107252453 - L1PA16 LINE L1 -19 6147 5852 248 283 0 116 chr4 77036248 77036354 -107252308 - MIR SINE MIR -55 153 59 1086 205 162 27 chr4 77036376 77036747 -107251915 + LTR16A1 LTR ERVL 4 424 -33 608 194 58 31 chr4 77037338 77037529 -107251133 - LTR33A LTR ERVL 0 523 328 527 340 130 3 chr4 77039273 77039573 -107249089 + L2 LINE L2 2959 3296 -17 425 214 95 16 chr4 77039986 77040112 -107248550 + MIR SINE MIR 101 236 -26 285 345 21 28 chr4 77040165 77040310 -107248352 - L2 LINE L2 -186 3086 2943 639 214 31 31 chr4 77040561 77040730 -107247932 + MER20B DNA MER1_type 224 395 -388 2233 181 117 2 chr4 77040730 77041183 -107247479 - MLT1D LTR MaLR 0 505 1 639 214 31 31 chr4 77041183 77041205 -107247457 + MER20B DNA MER1_type 394 415 -368 448 219 0 10 chr4 77041203 77041299 -107247363 - MLT1D LTR MaLR -410 95 1 * 305 206 175 62 chr4 77041493 77041653 -107247009 + MER20B DNA MER1_type 606 783 0 542 227 83 8 chr4 77042797 77042929 -107245733 + MIR SINE MIR 5 146 -116 335 209 99 0 chr4 77042951 77043042 -107245620 + MER96B DNA MER1_type? 318 417 0 510 284 51 17 chr4 77043739 77043975 -107244687 - Charlie8 DNA MER1_type -2142 275 32 1849 176 7 7 chr4 77043982 77044277 -107244385 - AluJo SINE Alu -17 295 1 364 39 0 0 chr4 77045206 77045258 -107243404 + L1MA7 LINE L1 6239 6290 -1 23 54 0 0 chr4 77045558 77045595 -107243067 + AT_rich Low_complexity Low_complexity 1 37 0 2430 81 0 16 chr4 77046074 77046382 -107242280 + AluSc SINE Alu 1 303 -6 3086 155 27 35 chr4 77046599 77046934 -107241728 + L1MC1 LINE L1 5620 5949 -384 2076 167 0 0 chr4 77046934 77047246 -107241416 + AluSx SINE Alu 1 312 0 3086 155 27 35 chr4 77047246 77047548 -107241114 + L1MC1 LINE L1 5949 6252 -81 5625 141 36 32 chr4 77048412 77049418 -107239244 + L1MC1 LINE L1 5101 6114 -219 2242 168 54 5 chr4 77049418 77049824 -107238838 + MSTA LTR MaLR 3 428 0 5625 141 36 32 chr4 77049824 77050045 -107238617 + L1MC1 LINE L1 6114 6333 0 297 218 60 113 chr4 77051126 77051259 -107237403 + L2 LINE L2 3188 3313 0 316 312 43 35 chr4 77051594 77051735 -107236927 - MIR SINE MIR 0 262 121 678 229 0 21 chr4 77051759 77051903 -107236759 + MIR SINE MIR 13 153 -109 1008 210 261 28 chr4 77051903 77052446 -107236216 + LTR50 LTR ERVL 1 670 -125 274 297 54 18 chr4 77052549 77052660 -107236002 + MIR SINE MIR 148 262 0 294 235 49 25 chr4 77053258 77053339 -107235323 - MIR SINE MIR -165 97 15 459 0 0 0 chr4 77053700 77053751 -107234911 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 278 256 0 26 chr4 77054194 77054272 -107234390 + A-rich Low_complexity Low_complexity 4 79 0 6035 179 49 16 chr4 77054698 77056054 -107232608 - Charlie1a DNA MER1_type 0 1455 55 2294 120 28 31 chr4 77056305 77056696 -107231966 + MLT1B LTR MaLR 1 390 0 305 320 19 45 chr4 77056826 77056982 -107231680 - MER5A DNA MER1_type 0 189 38 254 214 18 0 chr4 77060211 77060267 -107228395 + MLT1K LTR MaLR 5 61 -527 422 251 104 6 chr4 77060281 77060444 -107228218 - LTR33 LTR ERVL -6 515 337 370 238 136 27 chr4 77060481 77060628 -107228034 - LTR33 LTR ERVL -274 247 85 347 339 25 8 chr4 77061326 77061447 -107227215 - L2 LINE L2 0 3272 3150 21 0 0 0 chr4 77062295 77062316 -107226346 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 77062330 77062351 -107226311 + AT_rich Low_complexity Low_complexity 1 21 0 223 330 0 37 chr4 77063276 77063385 -107225277 - L2 LINE L2 -287 2985 2881 306 303 86 81 chr4 77063525 77064064 -107224598 - L2 LINE L2 -4 3268 2657 499 224 26 0 chr4 77064140 77064256 -107224406 + MIR3 SINE MIR 56 174 -34 281 313 119 26 chr4 77064939 77065249 -107223413 + L2 LINE L2 1853 2191 -1123 309 395 53 0 chr4 77065791 77065905 -107222757 + L2 LINE L2 3118 3237 -35 479 295 14 86 chr4 77067812 77067891 -107220771 + MIR SINE MIR 36 119 -143 2391 98 0 0 chr4 77067891 77068198 -107220464 - AluSg1 SINE Alu -2 307 1 479 295 14 86 chr4 77068198 77068328 -107220334 + MIR SINE MIR 119 230 -32 213 200 0 0 chr4 77068359 77068394 -107220268 + (TGG)n Simple_repeat Simple_repeat 3 37 0 206 176 27 0 chr4 77069157 77069231 -107219431 + T-rich Low_complexity Low_complexity 4 79 0 3872 173 24 4 chr4 77069469 77070215 -107218447 + L1MA5 LINE L1 257 1017 -4311 41617 37 1 9 chr4 77070243 77076422 -107212240 - L1PA3 LINE L1 -3 6152 3 14542 188 21 37 chr4 77076422 77081051 -107207611 + L1MA5 LINE L1 1005 5708 -774 1744 190 0 4 chr4 77081051 77081330 -107207332 + AluJb SINE Alu 1 278 -34 414 0 0 0 chr4 77081331 77081377 -107207285 + (CA)n Simple_repeat Simple_repeat 2 47 0 14542 188 21 37 chr4 77081377 77082289 -107206373 + L1MA5 LINE L1 5707 6467 -15 192 77 0 0 chr4 77082295 77082321 -107206341 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1784 240 35 10 chr4 77082402 77082890 -107205772 + MER110A-int LTR ERV1 4144 4643 -4 333 68 0 0 chr4 77083046 77083090 -107205572 + (TC)n Simple_repeat Simple_repeat 2 45 0 306 0 0 0 chr4 77083090 77083124 -107205538 + (CA)n Simple_repeat Simple_repeat 1 34 0 625 191 196 10 chr4 77083127 77083282 -107205380 + MER110A LTR ERV1 36 241 -227 3001 133 35 0 chr4 77083282 77083764 -107204898 + L1PA16 LINE L1 5668 6166 0 625 191 196 10 chr4 77083764 77083817 -107204845 + MER110A LTR ERV1 241 283 -185 771 102 0 0 chr4 77083817 77083925 -107204737 - AluSq/x SINE Alu -204 108 1 625 229 29 6 chr4 77083925 77084095 -107204567 + MER110A LTR ERV1 295 468 0 198 276 66 53 chr4 77084127 77084203 -107204459 + MIR SINE MIR 10 86 -122 674 123 9 26 chr4 77084275 77084389 -107204273 + FRAM SINE Alu 62 173 -3 1068 267 160 2 chr4 77085542 77085973 -107202689 + LTR33 LTR ERVL 20 518 -3 315 262 24 0 chr4 77085973 77086057 -107202605 + MIR SINE MIR 96 181 -81 246 318 0 0 chr4 77087248 77087336 -107201326 + (CATATA)n Simple_repeat Simple_repeat 3 90 0 32 43 0 0 chr4 77087402 77087448 -107201214 + AT_rich Low_complexity Low_complexity 1 46 0 261 98 0 0 chr4 77088293 77088334 -107200328 + (A)n Simple_repeat Simple_repeat 1 41 0 2293 106 0 0 chr4 77088339 77088640 -107200022 + AluSc SINE Alu 1 301 -8 216 286 179 12 chr4 77088656 77088740 -107199922 - L2 LINE L2 -9 3263 3166 * 433 207 0 0 chr4 77088733 77088820 -107199842 + MER5A DNA MER1_type 7 93 -96 1182 211 30 97 chr4 77088820 77089442 -107199220 - MLT2D LTR ERVL -2 552 1 1048 216 41 9 chr4 77089732 77089950 -107198712 + MIR SINE MIR 24 248 -14 844 283 42 4 chr4 77090157 77090397 -107198265 - MIR SINE MIR -11 251 3 326 235 0 12 chr4 77090631 77090712 -107197950 - MLT1J1 LTR MaLR -9 437 358 322 274 54 24 chr4 77090789 77090957 -107197705 - MLT1J2 LTR MaLR -213 237 65 31 0 0 0 chr4 77091853 77091884 -107196778 + AT_rich Low_complexity Low_complexity 1 31 0 227 337 20 0 chr4 77092264 77092365 -107196297 + LTR67 LTR ERVL 430 532 -25 271 317 37 0 chr4 77092387 77092469 -107196193 - MIR SINE MIR -58 150 66 618 130 0 0 chr4 77093601 77093701 -107194961 + L1MA10 LINE L1 6234 6333 -1 463 293 8 23 chr4 77093773 77093906 -107194756 + MIR3 SINE MIR 72 202 -6 264 274 103 26 chr4 77094401 77094518 -107194144 + MIR SINE MIR 103 228 -34 381 243 0 37 chr4 77094652 77094788 -107193874 + L1ME3A LINE L1 5314 5444 -726 * 4853 157 59 22 chr4 77094778 77095444 -107193218 + L1MA7 LINE L1 5105 5824 -467 1649 79 14 113 chr4 77095444 77095634 -107193028 - AluSq SINE Alu -15 298 145 1987 126 10 13 chr4 77095634 77095943 -107192719 - AluSx SINE Alu -4 308 1 1649 79 14 113 chr4 77095943 77096044 -107192618 - AluSq SINE Alu -168 145 36 4853 157 59 22 chr4 77096044 77096528 -107192134 + L1MA7 LINE L1 5824 6289 -2 2296 233 80 19 chr4 77096548 77097226 -107191436 + L1ME3A LINE L1 5428 6146 -24 195 42 0 0 chr4 77097226 77097250 -107191412 + (TG)n Simple_repeat Simple_repeat 2 25 0 1527 189 65 30 chr4 77097554 77098013 -107190649 + Charlie4a DNA MER1_type 3 477 -31 314 229 21 57 chr4 77098096 77098236 -107190426 + LTR33 LTR ERVL 21 155 -366 368 222 61 0 chr4 77098361 77098460 -107190202 + LTR33 LTR ERVL 368 472 -49 300 27 0 0 chr4 77098584 77098621 -107190041 + (TG)n Simple_repeat Simple_repeat 1 37 0 2401 50 0 0 chr4 77098772 77099053 -107189609 + AluY SINE Alu 1 281 -30 195 42 0 0 chr4 77100556 77100580 -107188082 + (TC)n Simple_repeat Simple_repeat 2 25 0 783 208 174 19 chr4 77100828 77101035 -107187627 + MIR SINE MIR 3 241 -21 201 296 56 0 chr4 77101244 77101315 -107187347 + L2 LINE L2 2979 3053 -219 452 297 35 78 chr4 77102371 77102635 -107186027 + MIR SINE MIR 2 252 -10 502 247 112 29 chr4 77102772 77102942 -107185720 - MIR SINE MIR -6 256 73 4348 93 57 9 chr4 77103274 77103959 -107184703 - L1MA4A LINE L1 -9 6294 5577 584 277 55 43 chr4 77104071 77104306 -107184356 + MIR SINE MIR 25 262 0 302 260 13 13 chr4 77104348 77104425 -107184237 + MIR SINE MIR 19 95 -113 1218 228 84 9 chr4 77105419 77105753 -107182909 - MLT1A2 LTR MaLR -15 359 1 422 288 33 49 chr4 77105805 77105989 -107182673 - MIR SINE MIR -1 261 81 4507 164 85 33 chr4 77106359 77107885 -107180777 + L1MA9 LINE L1 4652 6273 -39 773 156 0 35 chr4 77107888 77108145 -107180517 + (TA)n Simple_repeat Simple_repeat 1 248 0 773 172 0 18 chr4 77108167 77108395 -107180267 + (TA)n Simple_repeat Simple_repeat 1 223 0 273 169 26 65 chr4 77108457 77108534 -107180128 - L2 LINE L2 -81 3232 3159 203 130 14 58 chr4 77108541 77108610 -107180052 + (TA)n Simple_repeat Simple_repeat 2 67 0 28 0 0 0 chr4 77108644 77108672 -107179990 + AT_rich Low_complexity Low_complexity 1 28 0 312 181 12 60 chr4 77108841 77108924 -107179738 + L2 LINE L2 3154 3232 -81 555 342 111 17 chr4 77111870 77112221 -107176441 + L3 LINE CR1 1191 1574 -3 204 40 0 0 chr4 77113097 77113122 -107175540 + (CA)n Simple_repeat Simple_repeat 1 25 0 23 33 0 0 chr4 77113634 77113664 -107174998 + AT_rich Low_complexity Low_complexity 1 30 0 412 250 133 23 chr4 77114151 77114323 -107174339 - MIR SINE MIR 0 262 66 2067 151 0 3 chr4 77114426 77114730 -107173932 - AluJb SINE Alu -9 303 1 186 261 43 0 chr4 77115502 77115548 -107173114 + MIR SINE MIR 201 248 -14 279 342 20 27 chr4 77115967 77116116 -107172546 + MER117 DNA MER1_type 49 196 -1 437 346 20 0 chr4 77119401 77119554 -107169108 + MIR SINE MIR 13 168 -94 1116 39 0 0 chr4 77120871 77121048 -107167614 - AluY SINE Alu 0 331 155 11427 14 2 0 chr4 77122319 77124399 -107164263 + L1HS LINE L1 4074 6155 0 200 191 0 0 chr4 77125145 77125187 -107163475 + (CAT)n Simple_repeat Simple_repeat 3 44 0 6995 84 8 3 chr4 77125394 77126432 -107162230 + L1PA10 LINE L1 5119 6160 -8 1285 140 10 0 chr4 77126675 77126882 -107161780 - L1MA6 LINE L1 0 6300 6092 398 86 0 43 chr4 77126882 77126945 -107161717 + L1PA7 LINE L1 6083 6149 -5 684 126 42 72 chr4 77126961 77127134 -107161528 + L1MA6 LINE L1 5935 6112 -188 1312 195 116 55 chr4 77127411 77127755 -107160907 + MLT1A1 LTR MaLR 1 365 0 659 268 146 0 chr4 77127755 77127968 -107160694 - MIR SINE MIR 0 262 19 1271 243 59 16 chr4 77128420 77128795 -107159867 + L1ME1 LINE L1 57 447 -5949 2321 107 0 0 chr4 77128807 77129107 -107159555 - AluSg SINE Alu -10 300 1 451 132 40 0 chr4 77129117 77129193 -107159469 - L1MC2 LINE L1 -2 6342 6264 378 201 48 40 chr4 77129193 77129303 -107159359 + L1ME1 LINE L1 4913 5021 -1194 531 203 0 30 chr4 77129304 77129546 -107159116 + GA-rich Low_complexity Low_complexity 1 234 0 3189 231 52 24 chr4 77129564 77129859 -107158803 + L1ME1 LINE L1 5032 5317 -918 2170 96 0 7 chr4 77129859 77130159 -107158503 - AluSc SINE Alu 0 298 1 3189 231 52 24 chr4 77130159 77131033 -107157629 + L1ME1 LINE L1 5317 6230 -5 1804 161 10 7 chr4 77132155 77132459 -107156203 - AluJb SINE Alu -7 305 1 22 0 0 0 chr4 77133035 77133057 -107155605 + AT_rich Low_complexity Low_complexity 1 22 0 1757 140 42 0 chr4 77133064 77133329 -107155333 + AluSx SINE Alu 11 286 -26 27 0 0 0 chr4 77133329 77133356 -107155306 + AT_rich Low_complexity Low_complexity 1 27 0 244 297 59 20 chr4 77133476 77133577 -107155085 - L2 LINE L2 0 3313 3209 22935 52 0 2 chr4 77133720 77136519 -107152143 + L1PA3 LINE L1 3 2795 -3351 14783 28 0 8 chr4 77136519 77138947 -107149715 + L1PA3 LINE L1 3735 6155 0 1586 161 55 48 chr4 77139929 77140276 -107148386 - AluJo SINE Alu 0 349 1 317 265 17 76 chr4 77140959 77141020 -107147642 + MIR SINE MIR 20 83 -125 1535 211 89 6 chr4 77141020 77141357 -107147305 + MLT1A1 LTR MaLR 1 365 0 317 265 17 76 chr4 77141357 77141430 -107147232 + MIR SINE MIR 83 148 -60 1054 295 95 25 chr4 77141737 77142222 -107146440 - LTR33 LTR ERVL -2 519 1 233 248 60 68 chr4 77142824 77142941 -107145721 - MIR SINE MIR -27 235 120 219 236 104 57 chr4 77143320 77143426 -107145236 + L2 LINE L2 3198 3308 -5 547 282 141 0 chr4 77143733 77143896 -107144766 - MIR SINE MIR -10 252 67 299 274 29 63 chr4 77144086 77144230 -107144432 + MIR SINE MIR 21 159 -63 535 258 138 13 chr4 77144813 77144902 -107143760 - L1MA9 LINE L1 -25 6266 6190 270 0 0 0 chr4 77144902 77144932 -107143730 + (TG)n Simple_repeat Simple_repeat 1 30 0 535 258 138 13 chr4 77144932 77145105 -107143557 - L1MA9 LINE L1 -101 6190 5963 2441 115 8 24 chr4 77146321 77146694 -107141968 - THE1C LTR MaLR -8 367 1 311 268 113 7 chr4 77147985 77148127 -107140535 - MIR SINE MIR -28 234 78 295 335 15 47 chr4 77148913 77149132 -107139530 - MIR3 SINE MIR -50 212 2 28 29 0 0 chr4 77149893 77149928 -107138734 + AT_rich Low_complexity Low_complexity 1 35 0 810 277 30 13 chr4 77149933 77150164 -107138498 - MIR SINE MIR -26 236 2 185 319 0 0 chr4 77150585 77150632 -107138030 + L2 LINE L2 3226 3272 0 799 233 60 36 chr4 77152283 77152532 -107136130 - MER112 DNA MER1_type 0 256 2 483 139 0 0 chr4 77152898 77152970 -107135692 + MER53 DNA DNA 2 73 -116 501 245 68 27 chr4 77153141 77153288 -107135374 - MIR SINE MIR -26 236 84 255 308 33 0 chr4 77153362 77153453 -107135209 - L2 LINE L2 -238 3034 2941 714 199 0 23 chr4 77153627 77153758 -107134904 + FLAM_A SINE Alu 5 132 -1 1560 172 3 47 chr4 77153773 77154070 -107134592 - AluJo SINE Alu -23 289 6 568 317 54 0 chr4 77154219 77154418 -107134244 + MIR SINE MIR 5 213 -49 264 123 18 88 chr4 77154463 77154520 -107134142 + THE1A LTR MaLR 303 355 0 545 302 60 35 chr4 77154671 77154922 -107133740 + MIR SINE MIR 8 261 -1 180 0 0 0 chr4 77157508 77157528 -107131134 + (CAGC)n Simple_repeat Simple_repeat 2 21 0 31 99 0 0 chr4 77158315 77158416 -107130246 + GC_rich Low_complexity Low_complexity 1 101 0 1387 80 0 0 chr4 77159176 77159351 -107129311 - AluSg/x SINE Alu -5 307 133 370 251 120 48 chr4 77159424 77159591 -107129071 - MER5A DNA MER1_type -7 182 4 581 228 62 21 chr4 77160246 77160298 -107128364 + MIR SINE MIR 22 70 -192 1340 182 46 113 chr4 77160298 77160689 -107127973 + MLT1A1 LTR MaLR 1 365 0 581 228 62 21 chr4 77160689 77160781 -107127881 + MIR SINE MIR 70 172 -90 2541 186 91 27 chr4 77160782 77161330 -107127332 - MLT1E2 LTR MaLR 0 626 44 233 286 18 89 chr4 77161358 77161470 -107127192 + MIR SINE MIR 156 259 -3 242 256 106 19 chr4 77161505 77161612 -107127050 - MIR SINE MIR -56 152 23 332 169 34 0 chr4 77161791 77161850 -107126812 + MER66B LTR ERV1 284 344 -142 365 205 13 0 chr4 77162276 77162354 -107126308 + L1ME4a LINE L1 5606 5684 -437 717 224 62 6 chr4 77162410 77162571 -107126091 + MIR SINE MIR 1 170 -92 243 286 52 0 chr4 77162695 77162772 -107125890 + L2 LINE L2 3232 3312 -1 740 242 165 3 chr4 77162818 77163145 -107125517 + L1ME4a LINE L1 5716 6095 -26 204 67 0 0 chr4 77164523 77164553 -107124109 + (TC)n Simple_repeat Simple_repeat 1 30 0 515 308 0 7 chr4 77164557 77164703 -107123959 - MIR3 SINE MIR -63 145 1 220 241 0 19 chr4 77164757 77164811 -107123851 + A-rich Low_complexity Low_complexity 1 53 0 546 232 85 62 chr4 77166432 77166656 -107122006 - MIR SINE MIR 0 262 34 312 27 0 0 chr4 77167904 77167941 -107120721 + (CA)n Simple_repeat Simple_repeat 2 38 0 30 0 0 0 chr4 77168475 77168505 -107120157 + AT_rich Low_complexity Low_complexity 1 30 0 270 239 23 11 chr4 77168554 77168642 -107120020 + Charlie7 DNA MER1_type 2508 2596 -16 2047 127 0 7 chr4 77168650 77168933 -107119729 + AluSg SINE Alu 1 281 -29 877 268 113 0 chr4 77169663 77169954 -107118708 - LTR16C LTR ERVL 0 491 168 461 233 8 58 chr4 77170032 77170152 -107118510 - MER81 DNA DNA 0 114 1 2252 162 136 18 chr4 77170400 77170850 -107117812 - MLT1D LTR MaLR 0 505 3 257 273 0 0 chr4 77170927 77170993 -107117669 - HsTC2 DNA Tc2 -1825 73 8 394 314 141 25 chr4 77171075 77171352 -107117310 - L2 LINE L2 0 3313 3005 1972 98 14 0 chr4 77171793 77172070 -107116592 - L1MA2 LINE L1 0 6304 6024 265 280 70 30 chr4 77173557 77173657 -107115005 + L2 LINE L2 3168 3271 -1 405 291 117 10 chr4 77174465 77174661 -107114001 - MIR SINE MIR -31 231 15 346 246 70 7 chr4 77175164 77175306 -107113356 - L1ME4a LINE L1 -12 6109 5959 378 115 38 55 chr4 77175465 77175648 -107113014 + (TA)n Simple_repeat Simple_repeat 1 180 0 181 421 13 0 chr4 77176153 77176229 -107112433 + L2 LINE L2 3148 3224 -48 2152 121 0 7 chr4 77176553 77176851 -107111811 - AluSx SINE Alu -11 301 6 1825 112 0 73 chr4 77180198 77180484 -107108178 - AluSx SINE Alu -47 265 1 449 284 141 55 chr4 77180880 77181264 -107107398 - LTR33 LTR ERVL -102 419 3 1776 186 30 22 chr4 77181541 77181912 -107106750 - MLT1A2 LTR MaLR 0 374 1 207 350 25 25 chr4 77181975 77182095 -107106567 + L2 LINE L2 2646 2765 -549 1816 180 0 0 chr4 77182172 77182495 -107106167 + AluSx SINE Alu 1 323 0 296 392 104 18 chr4 77182525 77182747 -107105915 + L2 LINE L2 2932 3172 -100 223 244 0 0 chr4 77183007 77183048 -107105614 + MIR SINE MIR 19 59 -203 351 126 32 74 chr4 77183048 77183143 -107105519 - MER53 DNA DNA -3 186 96 754 237 7 0 chr4 77183211 77183363 -107105299 + MIR SINE MIR 47 199 -63 221 119 24 0 chr4 77183904 77183946 -107104716 + (CA)n Simple_repeat Simple_repeat 2 44 0 413 299 178 0 chr4 77186223 77186380 -107102282 - MER5A DNA MER1_type -4 185 1 356 279 10 112 chr4 77187724 77187921 -107100741 + L1MC4a LINE L1 5710 5886 -1922 26 0 0 0 chr4 77188120 77188146 -107100516 + AT_rich Low_complexity Low_complexity 1 26 0 733 274 61 43 chr4 77188204 77188434 -107100228 + MIR SINE MIR 3 236 -26 234 62 0 0 chr4 77190327 77190359 -107098303 + (TAA)n Simple_repeat Simple_repeat 2 33 0 618 51 0 0 chr4 77191198 77191276 -107097386 + (TCTCCC)n Simple_repeat Simple_repeat 2 79 0 6050 89 16 20 chr4 77191283 77192786 -107095876 + SVA Other Other 33 1386 0 233 214 133 41 chr4 77193586 77193684 -107094978 + MLT1L LTR MaLR 509 615 0 2390 100 0 3 chr4 77193715 77194025 -107094637 + AluSq SINE Alu 1 309 -4 1026 200 173 69 chr4 77194152 77194369 -107094293 + MER96B DNA MER1_type 4 197 -220 2034 98 29 0 chr4 77194369 77194677 -107093985 + AluSq SINE Alu 1 316 0 1026 200 173 69 chr4 77194677 77194833 -107093829 + MER96B DNA MER1_type 197 417 0 1451 142 13 8 chr4 77194914 77195153 -107093509 - L1PA16 LINE L1 0 6166 5927 1107 104 0 33 chr4 77195153 77195336 -107093326 + L1PA16 LINE L1 5724 5900 -266 2260 197 53 18 chr4 77195350 77195857 -107092805 + MER74A LTR ERVL 34 558 0 316 259 69 17 chr4 77195871 77195987 -107092675 - L2 LINE L2 -222 3091 2970 184 317 180 12 chr4 77196287 77196448 -107092214 + L2 LINE L2 2593 2780 -534 205 294 29 0 chr4 77196726 77196794 -107091868 - L2 LINE L2 -3 3310 3241 349 313 100 100 chr4 77196840 77197160 -107091502 + L2 LINE L2 2935 3254 -18 2132 116 3 7 chr4 77197906 77198198 -107090464 + AluSx SINE Alu 1 291 -21 229 127 55 0 chr4 77198269 77198324 -107090338 + (TTATA)n Simple_repeat Simple_repeat 4 61 0 2021 152 26 0 chr4 77198399 77198742 -107089920 - THE1B LTR MaLR -12 352 1 543 282 190 19 chr4 77198742 77199165 -107089497 - LTR33 LTR ERVL -11 510 15 2337 72 14 0 chr4 77199321 77199612 -107089050 + AluSg SINE Alu 1 295 -15 2484 58 3 16 chr4 77200587 77200896 -107087766 + AluY SINE Alu 1 305 -6 1502 162 121 18 chr4 77201459 77201529 -107087133 - THE1C LTR MaLR 0 375 314 7690 32 0 0 chr4 77201529 77203220 -107085442 - L1PA3 LINE L1 0 6155 4464 1502 162 121 18 chr4 77203220 77203489 -107085173 - THE1C LTR MaLR -61 314 1 2243 86 0 0 chr4 77203566 77203845 -107084817 + AluY SINE Alu 18 296 -15 26 0 0 0 chr4 77204721 77204747 -107083915 + AT_rich Low_complexity Low_complexity 1 26 0 234 259 12 12 chr4 77205460 77205545 -107083117 + L1MC/D LINE L1 5722 5806 -2002 446 269 170 6 chr4 77205576 77205758 -107082904 + MIR SINE MIR 37 248 -14 780 257 49 28 chr4 77206385 77206673 -107081989 - MLT1I LTR MaLR -59 350 57 1246 215 99 0 chr4 77206775 77207077 -107081585 - MER46C DNA MER2_type -3 335 4 2267 111 3 16 chr4 77207505 77207820 -107080842 + AluSx SINE Alu 1 311 -1 180 301 109 71 chr4 77207961 77208144 -107080518 + MIR SINE MIR 52 241 -21 184 270 111 0 chr4 77209169 77209232 -107079430 - L2 LINE L2 -59 3254 3185 6448 104 25 10 chr4 77209400 77209510 -107079152 + L1MA2 LINE L1 5172 5279 -1025 1744 158 31 14 chr4 77209510 77209640 -107079022 + AluSx SINE Alu 1 127 -185 216 0 0 0 chr4 77209640 77209664 -107078998 + (TAA)n Simple_repeat Simple_repeat 3 26 0 1744 158 31 14 chr4 77209664 77209824 -107078838 + AluSx SINE Alu 127 296 -16 6448 104 25 10 chr4 77209824 77210828 -107077834 + L1MA2 LINE L1 5279 6304 0 237 348 102 0 chr4 77212269 77212387 -107076275 - MER5A DNA MER1_type -50 139 10 200 221 0 15 chr4 77213012 77213080 -107075582 + GA-rich Low_complexity Low_complexity 3 69 0 205 317 200 8 chr4 77213506 77213626 -107075036 - L2 LINE L2 -7 3265 3123 22 0 0 0 chr4 77214747 77214769 -107073893 + AT_rich Low_complexity Low_complexity 1 22 0 191 117 78 13 chr4 77215094 77215120 -107073542 + (TA)n Simple_repeat Simple_repeat 2 25 -58 1772 183 10 0 chr4 77215120 77215426 -107073236 + AluJo SINE Alu 1 309 -3 191 117 78 13 chr4 77215426 77215476 -107073186 + (TA)n Simple_repeat Simple_repeat 25 83 0 779 248 120 56 chr4 77215628 77216003 -107072659 - LTR16A LTR ERVL -8 442 44 276 294 69 0 chr4 77216121 77216223 -107072439 + MIR3 SINE MIR 86 194 -14 2225 87 40 3 chr4 77216353 77216652 -107072010 - AluY SINE Alu -1 310 1 2117 86 0 0 chr4 77217579 77217871 -107070791 + L1PB1 LINE L1 5500 5791 -360 210 143 0 0 chr4 77217875 77217910 -107070752 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 2640 93 5 0 chr4 77217911 77218278 -107070384 + L1PB1 LINE L1 5782 6150 -1 2096 130 3 0 chr4 77218420 77218719 -107069943 + AluSq SINE Alu 1 300 -13 798 169 0 0 chr4 77219076 77219206 -107069456 + FLAM_C SINE Alu 1 130 -3 3690 150 27 11 chr4 77219309 77220016 -107068646 + L1MB2 LINE L1 5447 6164 -7 337 310 103 11 chr4 77220191 77220365 -107068297 + MIR SINE MIR 2 191 -71 195 42 0 0 chr4 77220777 77220801 -107067861 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2050 180 7 33 chr4 77220802 77221251 -107067411 - L1PA16 LINE L1 -20 6146 5710 224 365 0 8 chr4 77222821 77222930 -107065732 + MIR SINE MIR 38 142 -66 407 264 61 55 chr4 77223267 77223430 -107065232 - MIR SINE MIR -52 210 47 345 24 0 0 chr4 77223531 77223573 -107065089 + (CA)n Simple_repeat Simple_repeat 1 42 0 487 155 0 0 chr4 77223649 77223733 -107064929 + L1MD3 LINE L1 7731 7814 -181 27 0 0 0 chr4 77224309 77224336 -107064326 + AT_rich Low_complexity Low_complexity 1 27 0 6625 30 0 1 chr4 77225302 77226145 -107062517 - L1PA3 LINE L1 -3317 2829 1988 21328 30 14 0 chr4 77226145 77229473 -107059189 + L1PA3 LINE L1 2812 6152 -3 378 0 0 0 chr4 77229517 77229559 -107059103 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 1224 148 19 47 chr4 77229908 77230164 -107058498 + MLT1B LTR MaLR 1 249 -141 5063 95 14 5 chr4 77230164 77230925 -107057737 + L1PB2 LINE L1 5379 6146 -5 698 170 59 0 chr4 77230930 77231065 -107057597 + MLT1B LTR MaLR 245 387 -3 22 0 0 0 chr4 77231438 77231460 -107057202 + AT_rich Low_complexity Low_complexity 1 22 0 586 169 0 111 chr4 77231698 77231870 -107056792 + L1MA10 LINE L1 6092 6244 -90 2078 122 14 3 chr4 77231870 77232166 -107056496 - AluSx SINE Alu -13 299 1 1712 130 14 18 chr4 77232695 77232980 -107055682 + L1PA16 LINE L1 5874 6157 -9 1178 210 64 45 chr4 77233392 77233608 -107055054 - Tigger2 DNA MER2_type 0 2718 2491 2278 104 3 19 chr4 77233608 77233926 -107054736 + AluSq SINE Alu 1 313 0 1178 210 64 45 chr4 77233926 77234085 -107054577 - Tigger2 DNA MER2_type -227 2491 2336 1162 205 70 80 chr4 77235892 77236292 -107052370 - MSTD LTR MaLR 0 396 1 1677 175 96 3 chr4 77237024 77237356 -107051306 + MLT1A1 LTR MaLR 1 363 -2 324 255 78 39 chr4 77238426 77238579 -107050083 + MER103 DNA DNA 2 160 -6 25 0 0 0 chr4 77238644 77238669 -107049993 + AT_rich Low_complexity Low_complexity 1 25 0 580 241 29 82 chr4 77238954 77239161 -107049501 + MIR SINE MIR 9 204 -58 311 333 114 0 chr4 77239252 77239384 -107049278 - L2 LINE L2 0 3272 3126 450 279 89 34 chr4 77239837 77240016 -107048646 + MER5A DNA MER1_type 1 189 0 * 608 307 68 92 chr4 77240016 77240571 -107048091 - L2 LINE L2 -609 2705 2164 592 326 144 11 chr4 77240656 77241009 -107047653 + L2 LINE L2 2869 3268 -4 404 345 144 22 chr4 77241024 77241668 -107046994 - L2 LINE L2 -1212 2102 1380 264 362 14 7 chr4 77242255 77242393 -107046269 - MIR SINE MIR -7 255 117 2441 94 96 10 chr4 77242413 77242561 -107046101 + L1MA3 LINE L1 5855 5989 -316 213 94 0 0 chr4 77242561 77242593 -107046069 + (TGGGGG)n Simple_repeat Simple_repeat 5 36 0 2441 94 96 10 chr4 77242593 77242859 -107045803 + L1MA3 LINE L1 5989 6305 0 493 263 26 20 chr4 77243072 77243224 -107045438 - MER117 DNA MER1_type -4 193 41 1383 265 46 43 chr4 77243283 77243744 -107044918 - LTR16B LTR ERVL -2 462 1 437 289 106 53 chr4 77244480 77244688 -107043974 - MIR SINE MIR -33 229 11 209 236 181 14 chr4 77244998 77245070 -107043592 + L2 LINE L2 3158 3241 -31 1883 139 171 8 chr4 77245907 77246275 -107042387 + MSTA LTR MaLR 1 428 0 603 170 90 0 chr4 77246471 77246607 -107042055 - MIR SINE MIR -11 251 100 804 209 6 0 chr4 77248356 77248528 -107040134 - MER5B DNA MER1_type -2 176 4 494 367 26 9 chr4 77249160 77249386 -107039276 - MIR SINE MIR -14 248 19 29 70 0 0 chr4 77249469 77249526 -107039136 + AT_rich Low_complexity Low_complexity 1 57 0 680 202 0 0 chr4 77249675 77249794 -107038868 + FLAM_C SINE Alu 1 119 -24 21 36 0 0 chr4 77249880 77249908 -107038754 + AT_rich Low_complexity Low_complexity 1 28 0 525 193 60 18 chr4 77250986 77251145 -107037517 + MLT1I LTR MaLR 80 218 -191 1553 129 29 52 chr4 77251481 77251791 -107036871 - L1MB3 LINE L1 -2 6181 5879 186 103 0 0 chr4 77252418 77252447 -107036215 + (TTTTC)n Simple_repeat Simple_repeat 1 29 0 396 306 48 48 chr4 77252918 77253042 -107035620 - L2 LINE L2 -15 3257 3134 301 317 59 18 chr4 77253251 77253486 -107035176 - L2 LINE L2 -258 3014 2773 1164 227 36 0 chr4 77253531 77253782 -107034880 + MIR SINE MIR 2 261 -1 209 200 44 0 chr4 77254150 77254195 -107034467 - MIR3 SINE MIR -9 199 153 236 340 10 29 chr4 77254487 77254590 -107034072 - MIR SINE MIR -1 261 161 841 258 150 18 chr4 77254612 77255065 -107033597 + LTR33A LTR ERVL 9 521 -2 2154 146 112 0 chr4 77255532 77255915 -107032747 + MSTB LTR MaLR 1 426 0 2380 92 0 0 chr4 77255957 77256251 -107032411 + AluSc SINE Alu 1 294 -15 23 0 0 0 chr4 77256771 77256794 -107031868 + AT_rich Low_complexity Low_complexity 1 23 0 360 0 0 0 chr4 77256803 77256843 -107031819 + (TA)n Simple_repeat Simple_repeat 1 40 0 199 354 13 0 chr4 77257261 77257340 -107031322 + L2 LINE L2 2860 2939 -333 1249 147 6 106 chr4 77257702 77257790 -107030872 - Tigger2a DNA MER2_type -2419 289 194 1123 263 13 16 chr4 77257790 77258094 -107030568 + AluSq SINE Alu 1 303 0 1249 147 6 106 chr4 77258094 77258325 -107030337 - Tigger2a DNA MER2_type -2514 194 2 1777 191 3 3 chr4 77258333 77258631 -107030031 + AluSx SINE Alu 1 298 -14 843 165 0 0 chr4 77258694 77258821 -107029841 + FLAM_C SINE Alu 1 127 -16 355 327 65 29 chr4 77258837 77259112 -107029550 + L1MC4a LINE L1 5723 6007 -1801 220 213 24 0 chr4 77259498 77259661 -107029001 + GA-rich Low_complexity Low_complexity 1 166 0 411 274 72 28 chr4 77259820 77260160 -107028502 + L1ME LINE L1 5305 5657 -464 30 27 0 0 chr4 77260273 77260310 -107028352 + AT_rich Low_complexity Low_complexity 1 37 0 2381 144 20 20 chr4 77260339 77260735 -107027927 - MSTD LTR MaLR 0 396 1 256 219 14 14 chr4 77261463 77261536 -107027126 + LTR33A LTR ERVL 451 523 0 341 216 104 12 chr4 77262323 77262432 -107026230 + MIR SINE MIR 43 158 -66 780 138 28 83 chr4 77262457 77262638 -107026024 + MER5A DNA MER1_type 1 171 -18 271 155 42 14 chr4 77263241 77263312 -107025350 + L1PB4 LINE L1 6084 6156 0 508 274 179 28 chr4 77264781 77264882 -107023780 - MIR SINE MIR 0 262 178 2183 126 111 8 chr4 77264882 77265270 -107023392 + MSTA LTR MaLR 1 428 0 508 274 179 28 chr4 77265270 77265380 -107023282 - MIR SINE MIR -84 178 19 305 322 21 14 chr4 77265563 77265706 -107022956 + L1MC5 LINE L1 4460 4603 -1543 6882 124 39 16 chr4 77265709 77266866 -107021796 + Tigger1 DNA MER2_type 1 1183 -1235 324 314 0 53 chr4 77267548 77267736 -107020926 + (TGG)n Simple_repeat Simple_repeat 1 178 0 217 337 0 0 chr4 77267757 77267843 -107020819 + (TGG)n Simple_repeat Simple_repeat 2 87 0 56 39 0 0 chr4 77269952 77270029 -107018633 + AT_rich Low_complexity Low_complexity 1 77 0 7828 115 16 3 chr4 77270048 77271285 -107017377 + Tigger1 DNA MER2_type 1166 2418 0 245 279 0 12 chr4 77271571 77271657 -107017005 + L1P LINE L1 4920 5004 -1142 351 296 104 55 chr4 77271664 77272009 -107016653 + L1MC5 LINE L1 5009 5370 -776 1524 196 20 96 chr4 77272018 77272558 -107016104 + L1MC5 LINE L1 5457 5955 -1853 671 195 13 27 chr4 77272711 77272860 -107015802 - MER106B DNA MER1_type -911 148 2 393 139 14 0 chr4 77272954 77273026 -107015636 - MSTB2 LTR MaLR 0 457 385 30 69 0 0 chr4 77273179 77273237 -107015425 + AT_rich Low_complexity Low_complexity 1 58 0 1150 239 68 73 chr4 77273384 77274004 -107014658 + L1MC5 LINE L1 6612 7228 -733 2182 115 3 0 chr4 77274028 77274323 -107014339 + AluSg SINE Alu 1 296 -14 984 194 38 0 chr4 77274474 77274685 -107013977 + MER20 DNA MER1_type 1 219 0 1862 117 10 17 chr4 77274804 77275103 -107013559 + MER47A DNA MER2_type 70 366 0 517 236 67 71 chr4 77275124 77275378 -107013284 + L1MC5 LINE L1 7610 7862 -99 890 163 39 0 chr4 77275740 77275918 -107012744 - L1MA9 LINE L1 -9 6303 6119 302 217 0 0 chr4 77275919 77275988 -107012674 - L1MA9 LINE L1 -244 6068 6000 411 264 90 39 chr4 77276848 77277026 -107011636 + MLT1H1 LTR MaLR 180 366 -189 922 108 0 23 chr4 77277284 77277413 -107011249 + FLAM_C SINE Alu 6 131 -12 2454 66 3 3 chr4 77278402 77278707 -107009955 + AluY SINE Alu 1 305 -6 1850 181 0 0 chr4 77279142 77279435 -107009227 + AluJb SINE Alu 1 293 -19 247 62 0 0 chr4 77279595 77279627 -107009035 + MADE1 DNA Mariner 1 32 -48 22 35 0 0 chr4 77281126 77281155 -107007507 + AT_rich Low_complexity Low_complexity 1 29 0 208 137 20 59 chr4 77282459 77282510 -107006152 + L2 LINE L2 3265 3313 0 245 273 36 45 chr4 77282539 77282649 -107006013 - L2 LINE L2 -73 3240 3132 1081 288 72 21 chr4 77282654 77283084 -107005578 + LTR16C LTR ERVL 3 454 -37 213 39 0 0 chr4 77283102 77283128 -107005534 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 1016 119 17 28 chr4 77283128 77283305 -107005357 - L1PA10 LINE L1 -21 6147 5973 2073 77 36 46 chr4 77283313 77283410 -107005252 - L1PA10 LINE L1 -584 5584 5488 1906 102 27 87 chr4 77283410 77283743 -107004919 - AluSq SINE Alu 0 313 1 2073 77 36 46 chr4 77283743 77284024 -107004638 - L1PA10 LINE L1 -680 5488 5222 941 81 0 0 chr4 77284024 77284147 -107004515 + L1PA7 LINE L1 6028 6151 -3 2073 77 36 46 chr4 77284147 77284207 -107004455 - L1PA10 LINE L1 -946 5222 5163 182 333 64 26 chr4 77284282 77284360 -107004302 - L2 LINE L2 -237 3076 2996 692 309 180 20 chr4 77284887 77285376 -107003286 - L3 LINE CR1 -1 1576 1010 637 308 148 52 chr4 77285398 77286012 -107002650 + L2 LINE L2 2079 2751 -563 2324 106 0 6 chr4 77286316 77286627 -107002035 + AluSc SINE Alu 1 309 0 230 325 117 8 chr4 77288157 77288277 -107000385 - MLT1K LTR MaLR -357 231 99 696 69 0 49 chr4 77291080 77291182 -106997480 - L1PA12 LINE L1 -216 5952 5856 24804 119 2 7 chr4 77291185 77295023 -106993639 + L1P LINE L1 952 4772 -1374 22393 84 1 1 chr4 77295123 77299032 -106989630 + L1PA7 LINE L1 2237 6151 -3 1712 146 61 3 chr4 77299294 77299589 -106989073 + AluSx SINE Alu 1 312 0 991 269 141 18 chr4 77299595 77299992 -106988670 - MLT1D LTR MaLR -59 446 1 267 191 0 0 chr4 77300597 77300660 -106988002 + CT-rich Low_complexity Low_complexity 2 64 0 219 69 0 0 chr4 77300660 77300689 -106987973 + (CA)n Simple_repeat Simple_repeat 1 29 0 1663 77 18 0 chr4 77301473 77301694 -106986968 + MER30 DNA MER1_type 6 230 0 1041 259 48 19 chr4 77301788 77302104 -106986558 - LTR16C LTR ERVL -14 477 153 243 329 0 13 chr4 77302682 77302758 -106985904 - L2 LINE L2 -2 3311 3237 354 262 95 16 chr4 77303318 77303444 -106985218 + MIR SINE MIR 112 247 -15 198 103 0 0 chr4 77303757 77303786 -106984876 + (CA)n Simple_repeat Simple_repeat 2 30 0 2060 127 30 0 chr4 77304434 77304733 -106983929 - AluSx SINE Alu -3 309 2 472 300 128 9 chr4 77304924 77305151 -106983511 + MIR SINE MIR 1 254 -8 358 271 61 77 chr4 77305166 77305347 -106983315 - MER5A DNA MER1_type 0 189 12 653 275 63 36 chr4 77305365 77305587 -106983075 + L1ME3A LINE L1 5943 6170 0 560 241 0 116 chr4 77305638 77305837 -106982825 - MER5B DNA MER1_type -2 176 1 866 238 16 42 chr4 77305849 77306038 -106982624 - MER5A DNA MER1_type -5 184 1 2080 229 68 28 chr4 77307314 77307406 -106981256 + L1ME2 LINE L1 3754 3841 -2323 2163 106 20 3 chr4 77307406 77307699 -106980963 + AluSx SINE Alu 1 298 -14 2080 229 68 28 chr4 77307699 77309110 -106979552 + L1ME2 LINE L1 3841 5677 -487 1780 77 20 0 chr4 77309110 77309357 -106979305 + L1MA1 LINE L1 6047 6298 -4 2080 229 68 28 chr4 77309357 77309805 -106978857 + L1ME2 LINE L1 5677 6105 -59 * 15465 162 38 38 chr4 77309802 77316800 -106971862 + L1MA3 LINE L1 8 7724 0 242 55 0 0 chr4 77316822 77316859 -106971803 + L1ME3 LINE L1 6125 6172 -6 2809 82 12 18 chr4 77317641 77318042 -106970620 + L1PA8 LINE L1 5771 6169 -3 1759 173 7 10 chr4 77318076 77318376 -106970286 + AluSx SINE Alu 1 299 -13 14600 192 14 24 chr4 77318386 77319884 -106968778 + L1PB1 LINE L1 1456 2968 -3183 7226 42 7 0 chr4 77319884 77321352 -106967310 + L1PA5 LINE L1 4673 6146 -8 14600 192 14 24 chr4 77321352 77324200 -106964462 + L1PB1 LINE L1 2968 5746 -405 333 0 0 0 chr4 77324200 77324237 -106964425 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 14600 192 14 24 chr4 77324237 77324639 -106964023 + L1PB1 LINE L1 5746 6151 0 591 289 48 10 chr4 77324644 77324938 -106963724 + L1M4 LINE L1 2316 2620 -3526 5521 163 22 7 chr4 77324976 77326080 -106962582 + L1MA4A LINE L1 4255 5374 -772 1408 160 51 26 chr4 77326069 77326436 -106962226 + L1MA4A LINE L1 5856 6276 -24 * 886 313 17 52 chr4 77326441 77326582 -106962080 - HERV16 LTR ERVL -2514 2482 2338 1940 142 10 3 chr4 77326582 77326878 -106961784 + AluSx SINE Alu 1 298 -14 886 313 17 52 chr4 77326878 77327084 -106961578 - HERV16 LTR ERVL -2658 2338 2147 1118 201 44 0 chr4 77327427 77327656 -106961006 + L1ME4a LINE L1 5419 5657 -509 7370 61 2 6 chr4 77327658 77328739 -106959923 + L1PA7 LINE L1 5073 6151 -3 1337 272 16 55 chr4 77328741 77329303 -106959359 + L1ME2 LINE L1 5352 5891 -273 * 5852 106 24 24 chr4 77328800 77329705 -106958957 + L1MA3 LINE L1 5400 6304 -1 2158 128 3 0 chr4 77329801 77330106 -106958556 + AluSc SINE Alu 1 306 -3 2696 14 7 0 chr4 77330336 77330628 -106958034 - L1PA4 LINE L1 0 6155 5862 217 301 27 27 chr4 77330921 77330994 -106957668 - L2 LINE L2 -1012 2302 2230 21 36 0 0 chr4 77331725 77331753 -106956909 + AT_rich Low_complexity Low_complexity 1 28 0 790 201 7 0 chr4 77331767 77331916 -106956746 - MER31A LTR ERV1 -4 481 332 914 90 8 0 chr4 77331922 77332056 -106956606 + (GGAA)n Simple_repeat Simple_repeat 4 138 0 279 344 13 32 chr4 77332254 77332408 -106956254 - LTR33A LTR ERVL -369 154 4 490 341 93 53 chr4 77332519 77333025 -106955637 - L2 LINE L2 -194 3078 2540 1299 268 36 34 chr4 77333397 77333812 -106954850 + LTR16A LTR ERVL 35 450 0 601 240 199 23 chr4 77333918 77334139 -106954523 - MIR SINE MIR 0 262 3 585 104 0 0 chr4 77334455 77334532 -106954130 + U6 snRNA snRNA 1 77 -30 43631 51 1 1 chr4 77335319 77341503 -106947159 + L1PA4 LINE L1 9 6155 0 22 0 0 0 chr4 77341657 77341679 -106946983 + AT_rich Low_complexity Low_complexity 1 22 0 656 253 31 75 chr4 77341679 77341999 -106946663 + L1ME4a LINE L1 5629 5934 -187 326 298 75 37 chr4 77342005 77342166 -106946496 + L1ME LINE L1 4651 4817 -1329 1766 150 33 0 chr4 77342193 77342487 -106946175 - AluJb SINE Alu 0 304 2 330 225 0 0 chr4 77342516 77342596 -106946066 + (CATA)n Simple_repeat Simple_repeat 3 82 0 769 266 55 40 chr4 77342629 77343247 -106945415 + L1ME LINE L1 4906 5535 -635 10151 160 25 31 chr4 77344030 77345884 -106942778 + L1P LINE L1 11 1853 -4293 753 294 109 62 chr4 77395898 77396428 -106892234 + L2 LINE L2 2104 2658 -656 767 40 0 10 chr4 77396430 77396530 -106892132 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 2020 135 0 0 chr4 77396539 77396820 -106891842 - AluSq SINE Alu -32 281 1 1307 108 11 11 chr4 77396998 77397184 -106891478 + AluY SINE Alu 114 299 -12 308 353 139 23 chr4 77397360 77397533 -106891129 + MER91A DNA MER1_type 4 196 0 945 91 16 0 chr4 77397652 77397773 -106890889 + AluSp SINE Alu 2 124 -189 425 347 23 23 chr4 77398256 77398472 -106890190 - MIR SINE MIR -33 229 14 1365 202 0 20 chr4 77400128 77400380 -106888282 - AluJo SINE Alu -65 247 1 275 255 125 54 chr4 77400460 77400913 -106887749 - L1ME LINE L1 -408 5754 5274 2307 93 7 0 chr4 77401865 77402156 -106886506 - AluSq SINE Alu -20 293 1 1452 280 41 45 chr4 77402408 77402686 -106885976 - L2 LINE L2 -861 2453 2176 1245 167 9 48 chr4 77402686 77402913 -106885749 + MER20 DNA MER1_type 1 218 -1 1452 280 41 45 chr4 77402913 77403238 -106885424 - L2 LINE L2 -1138 2176 1852 2246 105 3 0 chr4 77403385 77403681 -106884981 - AluSp SINE Alu -16 297 1 398 291 163 11 chr4 77405085 77405442 -106883220 + L1M4 LINE L1 3755 4165 -1981 506 330 75 26 chr4 77405449 77405837 -106882825 + L1M4 LINE L1 4214 4620 -1526 419 180 0 0 chr4 77405974 77406063 -106882599 + L1MB8 LINE L1 6089 6177 -1 2292 69 7 0 chr4 77406073 77406197 -106882465 + AluSc SINE Alu 1 123 -180 198 0 0 0 chr4 77406197 77406219 -106882443 + (CAA)n Simple_repeat Simple_repeat 3 24 0 2292 69 7 0 chr4 77406219 77406395 -106882267 + AluSc SINE Alu 123 303 0 1984 128 6 34 chr4 77406397 77406718 -106881944 + AluSx SINE Alu 1 312 0 189 0 0 0 chr4 77406751 77406772 -106881890 + (T)n Simple_repeat Simple_repeat 1 21 0 1021 130 0 26 chr4 77407146 77407282 -106881380 + AluSq/x SINE Alu 1 134 -178 2093 118 0 10 chr4 77407282 77407578 -106881084 + AluSg SINE Alu 1 293 -17 1021 130 0 26 chr4 77407578 77407595 -106881067 + AluSq/x SINE Alu 134 150 -162 900 173 27 0 chr4 77408400 77408550 -106880112 - AluJo/FRAM SINE Alu -25 287 134 1926 153 3 0 chr4 77408550 77408844 -106879818 - AluSx SINE Alu -16 296 2 188 255 39 0 chr4 77409166 77409217 -106879445 - MER5A DNA MER1_type -50 139 87 3753 186 49 6 chr4 77409291 77409988 -106878674 - MER44D DNA MER2_type -5 600 2 2192 181 81 59 chr4 77410035 77410543 -106878119 + LTR44 LTR ERV1 1 519 0 1933 76 19 0 chr4 77410543 77410807 -106877855 + L1MA1 LINE L1 5945 6213 -89 473 220 36 40 chr4 77411003 77411191 -106877471 - L1MA10 LINE L1 -1 6331 5988 280 265 0 15 chr4 77411656 77411724 -106876938 - MER20 DNA MER1_type -152 67 1 271 323 19 44 chr4 77411749 77411907 -106876755 + HAL1 LINE L1 2354 2507 0 598 229 98 56 chr4 77411974 77412179 -106876483 + MIR SINE MIR 38 249 -13 2302 99 0 0 chr4 77412547 77412839 -106875823 - AluSx SINE Alu -20 292 1 1928 136 21 0 chr4 77412840 77413119 -106875543 - AluSx SINE Alu -6 306 22 658 181 57 79 chr4 77413255 77413320 -106875342 - MLT1B LTR MaLR -217 173 108 2275 100 0 23 chr4 77413320 77413492 -106875170 - AluSx SINE Alu -9 303 129 210 37 0 0 chr4 77413492 77413519 -106875143 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2347 53 3 0 chr4 77413519 77413801 -106874861 - AluY SINE Alu -28 283 1 2275 100 0 23 chr4 77413801 77413937 -106874725 - AluSx SINE Alu -181 131 1 658 181 57 79 chr4 77413937 77414048 -106874614 - MLT1B LTR MaLR -282 108 1 2736 207 25 111 chr4 77414048 77414284 -106874378 - L1MEd LINE L1 -2166 4478 4223 2139 126 3 3 chr4 77414284 77414585 -106874077 - AluSx SINE Alu -9 303 3 2736 207 25 111 chr4 77414585 77414906 -106873756 - L1MEd LINE L1 -2421 4223 3986 340 105 0 35 chr4 77414906 77414963 -106873699 - Alu SINE Alu 0 302 248 2736 207 25 111 chr4 77414963 77415378 -106873284 - L1MEd LINE L1 -2658 3986 3537 1223 150 0 10 chr4 77415383 77415613 -106873049 - AluJb SINE Alu 0 316 89 563 139 13 0 chr4 77415714 77415793 -106872869 - AluY SINE Alu -230 80 1 1535 160 35 63 chr4 77415959 77416277 -106872385 - AluJb SINE Alu -3 309 1 1946 109 7 33 chr4 77416499 77416802 -106871860 + AluSx SINE Alu 3 297 -15 879 199 12 0 chr4 77416803 77416964 -106871698 + AluJb SINE Alu 134 296 -16 892 321 64 35 chr4 77417864 77418197 -106870465 - L1M4 LINE L1 -986 5160 4838 1915 112 4 0 chr4 77418197 77418457 -106870205 - AluSq SINE Alu -32 281 21 892 321 64 35 chr4 77418457 77418892 -106869770 - L1M4 LINE L1 -1308 4838 4370 2266 101 0 35 chr4 77418965 77419283 -106869379 - AluSx SINE Alu -5 307 1 1655 183 10 27 chr4 77419411 77419711 -106868951 + AluJo SINE Alu 1 295 -17 2364 84 0 0 chr4 77419714 77420001 -106868661 + AluY SINE Alu 1 287 -24 33 56 0 0 chr4 77420001 77420055 -106868607 + AT_rich Low_complexity Low_complexity 1 54 0 2327 88 0 0 chr4 77420057 77420352 -106868310 + AluY SINE Alu 1 295 -16 5586 53 0 11 chr4 77420374 77421030 -106867632 + L1PA5 LINE L1 5505 6153 -1 1388 82 0 0 chr4 77421178 77421349 -106867313 + AluY SINE Alu 127 297 -14 12162 124 48 7 chr4 77421350 77423161 -106865501 - L1M1 LINE L1 -5206 2359 476 1763 168 18 3 chr4 77423158 77423491 -106865171 + L1 LINE L1 4560 4897 -1249 * 1492 229 64 14 chr4 77423596 77424015 -106864647 - L1MEd LINE L1 -3232 3412 2973 * 2492 252 46 52 chr4 77424012 77424691 -106863971 - L1M4 LINE L1 -5700 842 160 1560 152 9 82 chr4 77424691 77424862 -106863800 - AluJo SINE Alu -20 292 153 2235 86 0 0 chr4 77424862 77425154 -106863508 - AluY SINE Alu -19 292 1 1560 152 9 82 chr4 77425154 77425297 -106863365 - AluJo SINE Alu -159 153 1 2492 252 46 52 chr4 77425297 77425407 -106863255 - L1M4 LINE L1 -6382 160 56 5234 67 58 5 chr4 77425407 77426060 -106862602 + LTR12 LTR ERV1 1 688 0 2492 252 46 52 chr4 77426060 77426101 -106862561 - L1M4 LINE L1 -6486 56 16 844 276 42 87 chr4 77426174 77426656 -106862006 - LTR67 LTR ERVL -51 506 47 2906 140 22 2 chr4 77426725 77427176 -106861486 - L1MA6 LINE L1 -6 6294 5835 1067 140 106 6 chr4 77427335 77427514 -106861148 - AluSx SINE Alu -115 197 1 1974 118 14 3 chr4 77427515 77427804 -106860858 - L1MA6 LINE L1 -508 5783 5492 334 151 0 0 chr4 77427809 77427862 -106860800 - Alu SINE Alu 0 301 249 477 217 72 28 chr4 77427930 77428110 -106860552 - L1MC5 LINE L1 -443 7518 7331 290 226 155 0 chr4 77428220 77428304 -106860358 - L1MEd LINE L1 -4893 1741 1645 2309 96 13 7 chr4 77428306 77428609 -106860053 - AluSx SINE Alu -7 305 1 879 119 0 77 chr4 77429294 77429437 -106859225 + FLAM_C SINE Alu 2 133 0 1153 174 0 42 chr4 77429450 77429662 -106859000 + AluJb SINE Alu 87 289 -23 215 227 0 45 chr4 77431962 77432003 -106856659 + A-rich Low_complexity Low_complexity 5 43 -24 1121 195 0 0 chr4 77432003 77432177 -106856485 + FAM SINE Alu 2 175 0 215 227 0 45 chr4 77432177 77432201 -106856461 + A-rich Low_complexity Low_complexity 43 67 0 235 291 0 0 chr4 77432475 77432554 -106856108 + A-rich Low_complexity Low_complexity 1 79 0 22 56 0 0 chr4 77432736 77432772 -106855890 + AT_rich Low_complexity Low_complexity 1 36 0 1997 151 7 80 chr4 77433206 77433629 -106855033 - L1MB5 LINE L1 -299 5875 5484 207 0 0 0 chr4 77433635 77433658 -106855004 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 448 291 13 0 chr4 77433822 77433980 -106854682 - L1MEd LINE L1 -5947 687 528 2293 150 21 0 chr4 77434006 77434346 -106854316 - MER7A DNA MER2_type -1 345 1 1442 276 166 42 chr4 77434555 77434734 -106853928 + HAL1 LINE L1 280 435 -2072 2332 95 0 16 chr4 77434734 77435049 -106853613 + AluSg SINE Alu 1 310 0 1442 276 166 42 chr4 77435049 77435809 -106852853 + HAL1 LINE L1 435 1336 -1171 1373 289 69 28 chr4 77435810 77436200 -106852462 + HAL1 LINE L1 1367 1795 -712 2339 97 3 7 chr4 77436200 77436510 -106852152 + AluSx SINE Alu 1 309 -3 1373 289 69 28 chr4 77436510 77436759 -106851903 + HAL1 LINE L1 1795 2032 -475 366 115 0 0 chr4 77436843 77436895 -106851767 + MER66B LTR ERV1 295 346 -140 295 128 13 13 chr4 77436929 77437007 -106851655 + (TA)n Simple_repeat Simple_repeat 1 78 0 1638 158 17 27 chr4 77437189 77437486 -106851176 + AluJb SINE Alu 1 294 -18 5492 83 1 34 chr4 77437594 77438305 -106850357 - LTR12 LTR ERV1 0 688 1 4541 105 2 2 chr4 77438305 77438916 -106849746 - HERV9 LTR ERV1 0 8399 7789 405 129 0 0 chr4 77438912 77438974 -106849688 - HERV9 LTR ERV1 -835 7564 7503 * 616 146 68 44 chr4 77438972 77439433 -106849229 - HERV17 LTR ERV1 -5755 1141 704 1426 90 5 0 chr4 77439434 77439622 -106849040 - HERV17 LTR ERV1 -3455 4944 4756 * 11401 94 6 3 chr4 77439621 77441148 -106847514 - HERV17 LTR ERV1 -5427 2972 1442 572 229 254 24 chr4 77441291 77441579 -106847083 - L2 LINE L2 -706 2608 2255 624 214 196 83 chr4 77441610 77442008 -106846654 + L1MC5 LINE L1 7084 7526 -435 1667 167 29 7 chr4 77442500 77442801 -106845861 - AluJb SINE Alu 0 307 1 2478 59 0 3 chr4 77443525 77443828 -106844834 - AluY SINE Alu -9 302 1 289 87 0 22 chr4 77443829 77443875 -106844787 - LTR7 LTR ERV1 -346 104 60 371 296 104 0 chr4 77444607 77444742 -106843920 + MIR3 SINE MIR 50 198 -10 709 314 163 27 chr4 77445067 77445826 -106842836 - L2 LINE L2 -8 3264 2360 2331 129 20 6 chr4 77445826 77446168 -106842494 - MER7A DNA MER2_type -1 345 1 709 314 163 27 chr4 77446168 77446311 -106842351 - L2 LINE L2 -912 2360 2238 441 329 142 55 chr4 77446455 77447405 -106841257 + L2 LINE L2 1527 2626 -688 2401 84 3 0 chr4 77447405 77447701 -106840961 + AluSp SINE Alu 1 297 -16 441 329 142 55 chr4 77447701 77448072 -106840590 + L2 LINE L2 2626 2963 -351 229 121 0 0 chr4 77448906 77448939 -106839723 - Tigger7 DNA MER2_type -1591 896 864 5618 131 20 20 chr4 77449111 77449421 -106839241 + L1PB3 LINE L1 5157 5465 -689 213 39 0 0 chr4 77449421 77449447 -106839215 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 5618 131 20 20 chr4 77449447 77449966 -106838696 + L1PB3 LINE L1 5465 5988 -166 2197 114 10 0 chr4 77449966 77450273 -106838389 + AluSx SINE Alu 1 310 -2 5618 131 20 20 chr4 77450273 77450440 -106838222 + L1PB3 LINE L1 5988 6153 -1 1519 197 20 17 chr4 77450458 77450758 -106837904 + L1MCa LINE L1 4 304 -6122 1171 106 48 0 chr4 77450792 77451000 -106837662 + L1MCa LINE L1 1246 1463 -4963 436 125 14 0 chr4 77451071 77451143 -106837519 - MSTD LTR MaLR 0 396 324 328 122 0 0 chr4 77451186 77451235 -106837427 - MSTD LTR MaLR -347 49 1 3289 196 49 20 chr4 77451265 77451314 -106837348 + L1MCa LINE L1 1886 1932 -4494 2342 84 14 0 chr4 77451314 77451610 -106837052 - AluY SINE Alu -11 300 1 3289 196 49 20 chr4 77451610 77451672 -106836990 + L1MCa LINE L1 1932 1991 -4435 2372 139 11 11 chr4 77451672 77452038 -106836624 + MER47A DNA MER2_type 1 366 0 3289 196 49 20 chr4 77452038 77452224 -106836438 + L1MCa LINE L1 1991 2170 -4256 2078 107 27 0 chr4 77452224 77452524 -106836138 - AluSx SINE Alu -4 308 1 3289 196 49 20 chr4 77452524 77453568 -106835094 + L1MCa LINE L1 2170 3270 -3156 2739 86 14 3 chr4 77453569 77453920 -106834742 + THE1A LTR MaLR 1 355 0 12831 87 2 4 chr4 77453920 77455503 -106833159 + THE1A-int LTR MaLR 1 1580 0 654 14 0 0 chr4 77455503 77455575 -106833087 + THE1A LTR MaLR 1 72 -283 431 94 0 0 chr4 77455579 77455643 -106833019 + Alu SINE Alu 249 312 0 5864 136 48 41 chr4 77455663 77455766 -106832896 + L1MC1 LINE L1 5254 5355 -978 243 0 0 0 chr4 77455766 77455793 -106832869 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 5864 136 48 41 chr4 77455793 77456757 -106831905 + L1MC1 LINE L1 5355 6328 -5 21 36 0 0 chr4 77457308 77457336 -106831326 + AT_rich Low_complexity Low_complexity 1 28 0 1572 188 3 32 chr4 77457358 77457640 -106831022 + AluJb SINE Alu 1 274 -38 2247 108 13 0 chr4 77457646 77457952 -106830710 + AluY SINE Alu 1 310 -1 1027 194 0 6 chr4 77458088 77458253 -106830409 + FAM SINE Alu 1 164 -11 1101 184 225 0 chr4 77458265 77458509 -106830153 - AluJo SINE Alu -13 299 1 1293 204 58 34 chr4 77458522 77458934 -106829728 + L1MC5 LINE L1 7505 7926 -35 901 174 165 5 chr4 77459106 77459324 -106829338 - L1ME1 LINE L1 -12 6154 5902 379 277 55 50 chr4 77459383 77459585 -106829077 + L2 LINE L2 2584 2786 -528 403 260 146 0 chr4 77459686 77459809 -106828853 - L1ME1 LINE L1 -515 5649 5509 1671 188 0 10 chr4 77459809 77460112 -106828550 - AluSx SINE Alu -12 300 1 30 0 0 0 chr4 77460154 77460184 -106828478 + AT_rich Low_complexity Low_complexity 1 30 0 1709 173 3 19 chr4 77460356 77460663 -106827999 - AluJo SINE Alu -6 306 5 352 176 0 0 chr4 77461121 77461195 -106827467 + Charlie7 DNA MER1_type 74 147 -2465 22 106 0 0 chr4 77461623 77461708 -106826954 + AT_rich Low_complexity Low_complexity 1 85 0 44119 48 1 2 chr4 77462634 77468785 -106819877 - L1PA5 LINE L1 0 6154 11 317 207 0 12 chr4 77468844 77468926 -106819736 + L1MC4a LINE L1 5806 5886 -1922 1870 175 0 44 chr4 77468946 77469266 -106819396 + AluSx SINE Alu 1 306 -6 1265 81 11 6 chr4 77469581 77469755 -106818907 - AluY SINE Alu -2 309 135 1729 128 4 4 chr4 77469795 77470061 -106818601 + L1MB3 LINE L1 5872 6137 -46 1634 162 0 43 chr4 77470542 77470844 -106817818 + AluJb SINE Alu 1 289 -23 24 77 0 0 chr4 77470844 77470896 -106817766 + AT_rich Low_complexity Low_complexity 1 52 0 1876 208 28 108 chr4 77470914 77471617 -106817045 + L1MC4a LINE L1 6613 7224 -632 863 191 28 19 chr4 77471753 77471968 -106816694 + L1MC5 LINE L1 7301 7517 -444 1051 158 7 109 chr4 77471988 77472137 -106816525 - L1 LINE L1 -3650 2496 2333 2172 112 0 26 chr4 77472137 77472441 -106816221 + AluSc SINE Alu 1 296 -13 2495 77 0 0 chr4 77472442 77472739 -106815923 + AluY SINE Alu 2 298 -13 1051 158 7 109 chr4 77472739 77472871 -106815791 - L1 LINE L1 -3812 2334 2242 230 341 72 14 chr4 77473203 77473341 -106815321 + MIR SINE MIR 5 150 -112 1814 142 73 0 chr4 77473449 77473723 -106814939 - AluSx SINE Alu -15 297 4 200 260 0 20 chr4 77474974 77475024 -106813638 + CT-rich Low_complexity Low_complexity 1 49 0 2031 148 3 0 chr4 77475261 77475559 -106813103 - AluSx SINE Alu -10 302 4 22 0 0 0 chr4 77475768 77475790 -106812872 + AT_rich Low_complexity Low_complexity 1 22 0 1972 157 0 3 chr4 77475815 77476114 -106812548 + AluJb SINE Alu 1 298 -14 963 180 0 0 chr4 77476234 77476395 -106812267 - AluJo/FRAM SINE Alu -18 294 134 1906 164 3 0 chr4 77476395 77476694 -106811968 - AluJb SINE Alu -12 300 1 2214 119 3 0 chr4 77476699 77477010 -106811652 - AluSq SINE Alu -1 312 1 326 301 80 40 chr4 77477129 77477328 -106811334 - L1M4 LINE L1 -1022 5124 4918 12684 69 19 0 chr4 77477328 77480362 -106808300 - L1PA7 LINE L1 -3 6151 3072 15359 121 14 99 chr4 77482570 77485947 -106802715 - L1PA7 LINE L1 -3045 3101 12 797 179 32 19 chr4 77486006 77486162 -106802500 - AluJ SINE Alu -8 294 137 188 188 14 0 chr4 77486208 77486277 -106802385 + (TA)n Simple_repeat Simple_repeat 2 71 0 321 229 118 89 chr4 77486279 77486598 -106802064 - L1M4 LINE L1 -1489 4657 4323 209 230 86 84 chr4 77486815 77486994 -106801668 + MIR SINE MIR 7 243 -19 2140 135 3 3 chr4 77487097 77487408 -106801254 - AluSx SINE Alu -1 311 1 915 139 0 15 chr4 77487408 77487545 -106801117 - AluJ SINE Alu -177 135 1 27 29 0 0 chr4 77487582 77487616 -106801046 + AT_rich Low_complexity Low_complexity 1 34 0 1716 118 11 33 chr4 77487915 77488186 -106800476 - AluSg SINE Alu -45 265 1 274 361 37 9 chr4 77488315 77488423 -106800239 + L2 LINE L2 3124 3234 -38 227 127 109 18 chr4 77488425 77488480 -106800182 - L1ME LINE L1 -305 5816 5757 234 288 8 42 chr4 77489373 77489491 -106799171 + MER103 DNA DNA 32 145 -21 484 273 45 0 chr4 77489507 77489641 -106799021 - FLAM_A SINE Alu 0 139 1 888 121 0 0 chr4 77490059 77490208 -106798454 + FLAM_C SINE Alu 1 149 0 3310 211 100 40 chr4 77490988 77491182 -106797480 + L1MB8 LINE L1 4 185 -6357 4631 59 32 0 chr4 77491182 77491774 -106796888 - L1PA5 LINE L1 -4 6150 5540 3310 211 100 40 chr4 77491774 77492539 -106796123 + L1MB8 LINE L1 185 1028 -5514 2297 103 3 7 chr4 77492539 77492849 -106795813 - AluSx SINE Alu -3 309 1 3310 211 100 40 chr4 77492849 77492890 -106795772 + L1MB8 LINE L1 1028 1065 -5477 1873 161 11 23 chr4 77492892 77493102 -106795560 + MLT1A1-int LTR MaLR 1386 1592 -143 2242 130 7 0 chr4 77493102 77493409 -106795253 - AluJb SINE Alu -3 309 1 1873 161 11 23 chr4 77493409 77493552 -106795110 + MLT1A1-int LTR MaLR 1592 1735 0 1536 182 31 23 chr4 77493552 77493903 -106794759 + MLT1A1 LTR MaLR 1 354 -11 271 304 38 6 chr4 77493910 77494068 -106794594 + L1MB8 LINE L1 1996 2158 -4488 2162 125 0 0 chr4 77494170 77494458 -106794204 + AluSx SINE Alu 1 288 -24 2846 223 39 14 chr4 77494474 77495582 -106793080 + L1MB8 LINE L1 2371 3508 -3136 4743 183 50 12 chr4 77495646 77497061 -106791601 + L1MB8 LINE L1 4730 6193 -489 2269 110 11 13 chr4 77497069 77497441 -106791221 - L1MA5 LINE L1 -2 6298 5928 25 0 0 0 chr4 77497463 77497488 -106791174 + AT_rich Low_complexity Low_complexity 1 25 0 303 234 11 32 chr4 77497493 77497587 -106791075 - L1MA5 LINE L1 -373 5927 5836 * 4049 147 32 0 chr4 77497561 77498487 -106790175 - L1MA5 LINE L1 -737 5563 4618 2496 7 80 0 chr4 77498488 77498776 -106789886 - AluY SINE Alu 0 311 1 1407 177 23 7 chr4 77498783 77499082 -106789580 + L1MB8 LINE L1 6191 6494 -182 21 82 0 0 chr4 77499848 77499897 -106788765 + AT_rich Low_complexity Low_complexity 1 49 0 351 316 88 12 chr4 77499909 77500080 -106788582 - MIR SINE MIR -48 214 31 251 219 0 47 chr4 77500176 77500240 -106788422 + MIR SINE MIR 87 147 -115 227 258 134 21 chr4 77500396 77500493 -106788169 - L2 LINE L2 0 3313 3206 1781 173 3 10 chr4 77501709 77502009 -106786653 + AluJo SINE Alu 1 298 -14 22 80 0 0 chr4 77502012 77502062 -106786600 + AT_rich Low_complexity Low_complexity 1 50 0 410 223 171 42 chr4 77503087 77503280 -106785382 - MIR SINE MIR -20 242 25 25 0 0 0 chr4 77503668 77503693 -106784969 + AT_rich Low_complexity Low_complexity 1 25 0 318 285 63 93 chr4 77503792 77504051 -106784611 + L1ME3A LINE L1 4 248 -5871 1735 149 176 16 chr4 77504051 77504420 -106784242 + MSTA LTR MaLR 1 428 0 318 285 63 93 chr4 77504420 77504556 -106784106 + L1ME3A LINE L1 248 387 -5732 718 252 120 52 chr4 77504686 77505416 -106783246 + L1ME3A LINE L1 561 1358 -4862 1136 175 65 4 chr4 77505694 77505940 -106782722 + MLT1C LTR MaLR 1 261 -206 1835 285 112 46 chr4 77505940 77506301 -106782361 + L1ME3A LINE L1 3613 3949 -2180 3986 82 6 4 chr4 77506301 77506850 -106781812 + L1PA10 LINE L1 5616 6165 -3 1835 285 112 46 chr4 77506850 77506903 -106781759 + L1ME3A LINE L1 3949 3997 -2132 2193 125 7 0 chr4 77506903 77507206 -106781456 + AluSx SINE Alu 1 305 -7 1835 285 112 46 chr4 77507206 77507676 -106780986 + L1ME3A LINE L1 3997 4434 -1695 2388 84 7 0 chr4 77507676 77507973 -106780689 + AluSg SINE Alu 1 299 -11 1835 285 112 46 chr4 77507973 77508328 -106780334 + L1ME3A LINE L1 4434 4764 -1365 600 252 0 0 chr4 77508328 77508470 -106780192 + FLAM_A SINE Alu 1 142 0 1835 285 112 46 chr4 77508470 77508883 -106779779 + L1ME3A LINE L1 4764 5380 -749 333 368 80 5 chr4 77508886 77509098 -106779564 + L1ME3A LINE L1 5397 5624 -2167 1362 207 4 0 chr4 77509319 77509556 -106779106 + AluJb SINE Alu 2 239 -73 611 157 29 29 chr4 77509574 77509746 -106778916 + GA-rich Low_complexity Low_complexity 1 172 0 857 169 6 0 chr4 77509764 77509926 -106778736 + GA-rich Low_complexity Low_complexity 1 166 -12 1492 137 22 114 chr4 77509926 77510241 -106778421 + AluJo SINE Alu 10 295 -17 857 169 6 0 chr4 77510241 77510255 -106778407 + GA-rich Low_complexity Low_complexity 166 178 0 252 270 150 7 chr4 77510285 77510465 -106778197 + L1ME3A LINE L1 5713 5934 -211 548 286 139 30 chr4 77510808 77511147 -106777515 - MLT1L LTR MaLR -91 524 149 843 210 74 0 chr4 77511148 77511324 -106777338 + MER5A DNA MER1_type 1 189 0 601 271 7 7 chr4 77512192 77512347 -106776315 + MIR SINE MIR 53 207 -55 359 205 84 33 chr4 77512648 77512825 -106775837 + L1MC4a LINE L1 5692 5877 -244 1069 210 162 57 chr4 77513101 77513435 -106775227 - MLT1F LTR MaLR -69 473 105 2010 130 0 0 chr4 77513639 77513960 -106774702 + AluSx SINE Alu 1 321 0 620 232 113 0 chr4 77514375 77514552 -106774110 + L2 LINE L2 2394 2590 -724 468 207 158 12 chr4 77514916 77515080 -106773582 + MLT1L LTR MaLR 418 605 -10 429 295 139 38 chr4 77515464 77515810 -106772852 + MLT1J2 LTR MaLR 70 450 0 3835 103 2 19 chr4 77516898 77517433 -106771229 + MER1A DNA MER1_type 2 527 0 491 282 0 15 chr4 77517578 77517709 -106770953 - MIR SINE MIR -71 191 63 510 17 0 0 chr4 77517898 77517957 -106770705 + (TG)n Simple_repeat Simple_repeat 1 59 0 348 272 173 16 chr4 77518763 77518954 -106769708 + MIR SINE MIR 28 248 -14 318 197 289 39 chr4 77519727 77519888 -106768774 - Charlie2 DNA MER1_type -57 2805 2685 2327 97 0 10 chr4 77519888 77520024 -106768638 + AluSx SINE Alu 1 137 -175 2169 117 7 0 chr4 77520024 77520315 -106768347 + AluSg SINE Alu 1 293 -17 2327 97 0 10 chr4 77520315 77520487 -106768175 + AluSx SINE Alu 137 306 -6 318 197 289 39 chr4 77520487 77520533 -106768129 - Charlie2 DNA MER1_type -176 2686 2546 319 213 23 19 chr4 77520533 77520640 -106768022 - LTR33A LTR ERVL 0 523 444 333 158 40 0 chr4 77520650 77520726 -106767936 + L1MB8 LINE L1 5928 6006 -172 773 203 7 0 chr4 77520785 77520933 -106767729 + MER58B DNA MER1_type 183 331 -10 3265 31 0 0 chr4 77520936 77521319 -106767343 + L1PA3 LINE L1 5770 6152 -3 2165 135 0 3 chr4 77521357 77521660 -106767002 + AluSx SINE Alu 1 302 -10 602 287 45 20 chr4 77521675 77521919 -106766743 - Charlie2b DNA MER1_type -1863 919 670 823 126 11 89 chr4 77521919 77522109 -106766553 + Charlie2b DNA MER1_type 2608 2782 0 451 319 88 42 chr4 77522327 77522565 -106766097 - MIR SINE MIR -6 256 8 21 36 0 0 chr4 77522696 77522724 -106765938 + AT_rich Low_complexity Low_complexity 1 28 0 1845 173 7 0 chr4 77522725 77523009 -106765653 - AluJb SINE Alu -26 286 1 804 152 8 8 chr4 77523016 77523141 -106765521 - FLAM_C SINE Alu -17 126 2 290 233 133 53 chr4 77523285 77523435 -106765227 - MIR3 SINE MIR -6 202 41 378 247 31 31 chr4 77523731 77523816 -106764846 - MER5A DNA MER1_type -84 105 18 1556 132 4 40 chr4 77523816 77524066 -106764596 - AluJb SINE Alu -1 311 71 378 247 31 31 chr4 77524066 77524077 -106764585 - MER5A DNA MER1_type -170 19 9 25 51 0 0 chr4 77524281 77524320 -106764342 + AT_rich Low_complexity Low_complexity 1 39 0 440 277 188 41 chr4 77524963 77525356 -106763306 + MLT1H LTR MaLR 99 549 0 333 303 8 53 chr4 77525999 77526131 -106762531 - MIR3 SINE MIR -40 168 43 1903 178 0 0 chr4 77526151 77526437 -106762225 + AluJo SINE Alu 1 286 -26 465 198 67 87 chr4 77526451 77526540 -106762122 - L1 LINE L1 -2877 3269 3180 2097 114 0 32 chr4 77526540 77526848 -106761814 - AluSc SINE Alu -9 300 3 465 198 67 87 chr4 77526848 77526957 -106761705 - L1 LINE L1 -2966 3180 3072 1801 116 126 0 chr4 77527107 77527384 -106761278 - AluSq SINE Alu -1 312 1 1588 202 68 0 chr4 77527386 77527752 -106760910 - LTR65 LTR ERV1 -278 391 1 2038 119 10 0 chr4 77527796 77528091 -106760571 + AluSx SINE Alu 1 298 -14 2428 63 0 0 chr4 77528661 77528960 -106759702 + AluY SINE Alu 1 299 -12 2343 57 7 10 chr4 77528970 77529271 -106759391 + AluY SINE Alu 1 300 -11 2229 108 7 0 chr4 77529497 77529804 -106758858 + AluSc SINE Alu 1 309 0 453 262 113 60 chr4 77529793 77530075 -106758587 - L1ME4a LINE L1 -38 6083 5787 190 327 18 0 chr4 77530663 77530718 -106757944 + L2 LINE L2 2182 2237 -1077 2458 79 0 0 chr4 77531113 77531416 -106757246 + AluY SINE Alu 1 303 -8 6186 101 68 8 chr4 77531462 77532089 -106756573 + Charlie3 DNA MER1_type 1 698 -2008 1975 106 62 0 chr4 77532089 77532401 -106756261 - AluSg SINE Alu 0 310 1 6186 101 68 8 chr4 77532401 77532655 -106756007 + Charlie3 DNA MER1_type 698 935 -1771 2255 106 3 0 chr4 77532655 77532956 -106755706 - AluSp SINE Alu -11 302 1 4879 64 5 0 chr4 77532958 77533551 -106755111 + Charlie3 DNA MER1_type 1516 2111 -599 1988 122 0 0 chr4 77533551 77533814 -106754848 + AluSx SINE Alu 1 263 -49 310 53 0 0 chr4 77533814 77533852 -106754810 - L1ME4a LINE L1 -448 5736 5699 273 231 13 64 chr4 77533852 77533930 -106754732 + Charlie3 DNA MER1_type 1634 1707 -1003 * 311 245 75 0 chr4 77533927 77534021 -106754641 + MER21B LTR ERV1 9 109 -754 1783 52 0 0 chr4 77534111 77534322 -106754340 + Charlie3 DNA MER1_type 2251 2461 -249 271 31 0 0 chr4 77534317 77534349 -106754313 + Charlie3 DNA MER1_type 2671 2702 -8 * 569 196 10 0 chr4 77534625 77534727 -106753935 - FLAM_A SINE Alu -19 123 21 1346 223 36 4 chr4 77534767 77535066 -106753596 - AluJb SINE Alu 0 308 1 2089 112 0 40 chr4 77535435 77535758 -106752904 + AluSq SINE Alu 2 311 -2 21 0 0 0 chr4 77536043 77536064 -106752598 + AT_rich Low_complexity Low_complexity 1 21 0 402 139 23 81 chr4 77536259 77536345 -106752317 - FRAM SINE Alu -31 145 65 1262 166 162 0 chr4 77536351 77536604 -106752058 - AluJo SINE Alu -18 294 1 1560 165 62 4 chr4 77536647 77536919 -106751743 - AluJb SINE Alu -24 288 1 21 0 0 0 chr4 77544099 77544120 -106744542 + GC_rich Low_complexity Low_complexity 1 21 0 1383 115 26 26 chr4 77546433 77546659 -106742003 - AluJb SINE Alu -12 300 75 9381 121 19 19 chr4 77546759 77548202 -106740460 - HERV9 LTR ERV1 -6900 1499 58 5565 76 139 0 chr4 77548226 77548951 -106739711 - LTR12 LTR ERV1 0 826 1 696 244 109 15 chr4 77548979 77549180 -106739482 - L2 LINE L2 0 3313 3094 295 153 51 0 chr4 77549250 77549309 -106739353 - MIR SINE MIR -128 134 73 304 247 65 0 chr4 77549839 77549916 -106738746 + MIR SINE MIR 94 175 -87 203 222 111 0 chr4 77550708 77550780 -106737882 + MIR SINE MIR 183 262 0 * 302 253 188 0 chr4 77550762 77550858 -106737804 - MIR SINE MIR -62 146 58 241 260 0 55 chr4 77551166 77551239 -106737423 - MIR3 SINE MIR -35 173 105 2271 92 3 20 chr4 77551641 77551947 -106736715 + AluSx SINE Alu 1 301 -11 547 216 170 6 chr4 77552235 77552406 -106736256 - MIR SINE MIR 0 262 64 288 308 160 31 chr4 77552459 77552816 -106735846 + L2 LINE L2 2108 2510 -804 349 283 94 0 chr4 77553102 77553208 -106735454 - MER5A DNA MER1_type -3 186 71 337 238 163 41 chr4 77553205 77553377 -106735285 - MIR SINE MIR -10 252 60 * 1983 109 10 43 chr4 77553620 77553922 -106734740 - AluSq SINE Alu -21 292 1 22 0 0 0 chr4 77554951 77554973 -106733689 + AT_rich Low_complexity Low_complexity 1 22 0 324 149 0 45 chr4 77555885 77555952 -106732710 + MER97c DNA MER1_type? 43 106 -984 2427 94 0 0 chr4 77556237 77556545 -106732117 + AluSx SINE Alu 1 308 -4 1741 133 10 48 chr4 77556869 77557006 -106731656 + AluJb SINE Alu 1 142 -170 2201 114 13 3 chr4 77557006 77557314 -106731348 + AluSx SINE Alu 1 311 -1 2147 124 13 0 chr4 77557321 77557619 -106731043 + AluSg SINE Alu 1 302 -8 234 0 0 0 chr4 77557620 77557646 -106731016 + (TA)n Simple_repeat Simple_repeat 1 26 0 1741 133 10 48 chr4 77557646 77557791 -106730871 + AluJb SINE Alu 147 282 -30 1859 99 0 0 chr4 77558850 77559092 -106729570 + AluSg/x SINE Alu 69 310 0 1186 247 204 35 chr4 77559133 77559798 -106728864 + HAL1 LINE L1 219 996 -1511 1968 104 11 0 chr4 77559857 77560137 -106728525 + AluSx SINE Alu 1 283 -29 540 170 214 9 chr4 77560210 77560322 -106728340 + AluJo SINE Alu 2 136 -176 274 286 301 11 chr4 77560339 77560613 -106728049 + HAL1 LINE L1 1207 1400 -1107 1850 119 24 24 chr4 77560613 77560907 -106727755 + AluSq SINE Alu 12 305 -8 2230 111 0 0 chr4 77560912 77561209 -106727453 + AluSc SINE Alu 1 297 -12 274 286 301 11 chr4 77561209 77561449 -106727213 + HAL1 LINE L1 1402 1878 -629 1569 152 54 18 chr4 77561881 77562158 -106726504 + AluJo SINE Alu 1 287 -25 781 190 112 17 chr4 77562256 77562435 -106726227 - MER58A DNA MER1_type 0 224 29 24 32 0 0 chr4 77564298 77564329 -106724333 + AT_rich Low_complexity Low_complexity 1 31 0 328 316 95 42 chr4 77567436 77567699 -106720963 - Charlie8 DNA MER1_type -2130 287 11 753 150 7 50 chr4 77567758 77567898 -106720764 - AluSc SINE Alu -174 135 2 185 292 108 0 chr4 77568060 77568125 -106720537 + L2 LINE L2 3221 3292 -21 207 0 0 0 chr4 77570260 77570283 -106718379 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1837 148 20 3 chr4 77572383 77572688 -106715974 - AluSx SINE Alu -2 310 1 234 191 0 0 chr4 77572811 77572858 -106715804 + (TA)n Simple_repeat Simple_repeat 1 47 0 2051 104 31 14 chr4 77572871 77573158 -106715504 - AluSg SINE Alu -18 292 1 328 289 116 56 chr4 77573721 77573776 -106714886 + MIR SINE MIR 17 67 -195 1507 172 39 4 chr4 77573776 77574055 -106714607 - AluJb SINE Alu -23 289 1 328 289 116 56 chr4 77574055 77574231 -106714431 + MIR SINE MIR 67 262 0 721 150 92 8 chr4 77574849 77574969 -106713693 - FLAM_C SINE Alu -3 130 1 1248 197 28 45 chr4 77575406 77575695 -106712967 - AluJb SINE Alu -24 288 5 974 140 28 56 chr4 77575886 77576064 -106712598 - AluJb SINE Alu -139 173 1 2118 107 0 0 chr4 77576418 77576698 -106711964 - AluSx SINE Alu -32 280 1 2117 123 20 0 chr4 77576722 77577015 -106711647 - AluSx SINE Alu -13 299 1 853 225 50 71 chr4 77577034 77577314 -106711348 - AluJo SINE Alu -30 282 9 2255 101 3 0 chr4 77580015 77580311 -106708351 + AluSp SINE Alu 1 297 -16 216 0 0 0 chr4 77581136 77581160 -106707502 + (CA)n Simple_repeat Simple_repeat 2 25 0 238 316 0 23 chr4 77583635 77583768 -106704894 + C-rich Low_complexity Low_complexity 5 134 0 187 130 22 22 chr4 77583770 77583816 -106704846 + (CCG)n Simple_repeat Simple_repeat 1 46 0 2374 53 0 7 chr4 77585396 77585699 -106702963 + AluSg SINE Alu 1 301 -9 1229 186 132 0 chr4 77586390 77586648 -106702014 + AluJo SINE Alu 4 295 -7 201 211 79 40 chr4 77586927 77587003 -106701659 + L2 LINE L2 2481 2559 -755 906 304 143 4 chr4 77587069 77587651 -106701011 - L2 LINE L2 -43 3270 2618 2006 134 0 3 chr4 77587663 77587961 -106700701 - AluJb SINE Alu -15 297 1 2716 182 21 59 chr4 77588293 77588854 -106699808 - MER52A LTR ERV1 -1 1754 1215 1110 224 27 93 chr4 77588835 77589381 -106699281 - MER52A LTR ERV1 -141 495 274 * 242 132 0 0 chr4 77589382 77589420 -106699242 - MER52A LTR ERV1 -895 860 823 2078 142 0 0 chr4 77590068 77590378 -106698284 - AluSx SINE Alu -2 310 1 2098 124 0 0 chr4 77590395 77590702 -106697960 - AluSg SINE Alu -3 307 1 388 284 72 64 chr4 77590771 77591021 -106697641 + MLT1K LTR MaLR 334 585 -3 243 281 47 0 chr4 77591082 77591146 -106697516 + MLT2E LTR ERVL 32 98 -530 2065 168 25 3 chr4 77591152 77591509 -106697153 - MLT1A1 LTR MaLR 0 365 1 513 318 10 10 chr4 77591744 77591942 -106696720 + MLT2E LTR ERVL 408 605 -23 557 363 42 18 chr4 77592193 77592301 -106696361 + ERVL LTR ERVL 338 442 -5322 2237 92 3 3 chr4 77592301 77592605 -106696057 + AluSc SINE Alu 1 304 -5 557 363 42 18 chr4 77592605 77592827 -106695835 + ERVL LTR ERVL 442 676 -5088 2369 170 118 5 chr4 77592846 77593294 -106695368 + MLT1D LTR MaLR 1 499 -6 488 264 13 50 chr4 77593296 77593455 -106695207 + ERVL LTR ERVL 768 920 -4844 1010 251 96 18 chr4 77593714 77594048 -106694614 - L2 LINE L2 -1630 1684 1325 489 214 34 68 chr4 77594132 77594338 -106694324 - MER9 LTR ERVK -1 510 312 196 167 0 0 chr4 77644677 77644713 -106643949 - L2 LINE L2 -11 3302 3267 180 0 0 0 chr4 77645524 77645544 -106643118 + (T)n Simple_repeat Simple_repeat 1 20 0 342 98 0 0 chr4 77645715 77645766 -106642896 + (TA)n Simple_repeat Simple_repeat 2 52 0 189 175 0 0 chr4 77645897 77645937 -106642725 + (TA)n Simple_repeat Simple_repeat 2 41 0 2150 122 3 0 chr4 77646192 77646502 -106642160 + AluSx SINE Alu 1 311 0 1052 122 41 17 chr4 77646517 77646689 -106641973 + AluSg/x SINE Alu 135 310 0 878 138 0 0 chr4 77646818 77646948 -106641714 + FLAM_C SINE Alu 1 130 -3 659 151 0 0 chr4 77647979 77648072 -106640590 + FLAM_C SINE Alu 11 103 -40 1405 96 5 5 chr4 77648244 77648431 -106640231 - AluSx SINE Alu -125 187 1 1536 113 0 5 chr4 77648479 77648692 -106639970 - AluSg/x SINE Alu -13 297 86 1652 173 0 37 chr4 77649196 77649491 -106639171 + AluJo SINE Alu 5 288 -24 1698 129 4 47 chr4 77649749 77650052 -106638610 + AluY SINE Alu 15 305 0 618 147 17 35 chr4 77650077 77650217 -106638445 + FLAM_C SINE Alu 26 143 0 2129 100 21 7 chr4 77650645 77650935 -106637727 + AluSx SINE Alu 9 302 -10 1739 143 72 0 chr4 77651221 77651500 -106637162 - AluSx SINE Alu -13 299 1 198 329 26 0 chr4 77651637 77651713 -106636949 - L2 LINE L2 -36 3277 3200 1326 206 0 0 chr4 77651736 77651955 -106636707 - MER58A DNA MER1_type -5 219 1 2334 144 61 15 chr4 77652541 77652950 -106635712 - MSTA LTR MaLR 0 428 1 761 169 40 111 chr4 77653415 77653640 -106635022 - MER6B DNA MER2_type 0 210 2 486 163 22 0 chr4 77655119 77655211 -106633451 + AluY SINE Alu 194 287 -24 1998 107 15 0 chr4 77655586 77655857 -106632805 - AluSx SINE Alu -37 275 1 2364 71 10 0 chr4 77656105 77656402 -106632260 + AluY SINE Alu 1 300 -11 894 144 0 0 chr4 77656577 77656702 -106631960 - FLAM_C SINE Alu -18 125 1 181 343 36 57 chr4 77658268 77658408 -106630254 + MIR3 SINE MIR 24 160 -48 180 0 0 0 chr4 77659066 77659086 -106629576 + (TC)n Simple_repeat Simple_repeat 2 21 0 1109 143 0 0 chr4 77659192 77659346 -106629316 + AluJb SINE Alu 147 300 -12 219 69 0 0 chr4 77659533 77659562 -106629100 + (CAT)n Simple_repeat Simple_repeat 3 31 0 812 121 8 30 chr4 77659612 77659744 -106628918 + FLAM_C SINE Alu 5 133 0 1721 158 4 15 chr4 77661013 77661285 -106627377 + AluJo SINE Alu 1 269 -43 305 211 158 0 chr4 77662270 77662346 -106626316 + MIR SINE MIR 101 188 -74 1570 185 78 18 chr4 77662383 77662783 -106625879 - L2 LINE L2 -740 2574 2151 231 310 262 0 chr4 77663058 77663198 -106625464 + MIR SINE MIR 34 206 -56 1503 115 5 0 chr4 77663772 77663980 -106624682 - THE1B LTR MaLR 0 364 156 2079 80 17 14 chr4 77663981 77664270 -106624392 + AluY SINE Alu 2 291 -20 1518 218 101 23 chr4 77664532 77664860 -106623802 - L1M4 LINE L1 -3499 3145 2844 1750 147 15 4 chr4 77664860 77665133 -106623529 - AluJo SINE Alu -14 298 23 1518 218 101 23 chr4 77665133 77665349 -106623313 - L1M4 LINE L1 -3800 2844 2553 2360 112 0 3 chr4 77665349 77665661 -106623001 - AluSx SINE Alu 0 312 2 1518 218 101 23 chr4 77665661 77665706 -106622956 - L1M4 LINE L1 -4091 2553 2513 1007 158 0 0 chr4 77665770 77665934 -106622728 - AluSg/x SINE Alu -12 298 135 572 243 44 15 chr4 77665937 77666143 -106622519 - L1M4 LINE L1 -4250 2396 2185 1972 183 64 33 chr4 77666155 77666608 -106622054 - MLT1C LTR MaLR 0 467 1 598 263 96 17 chr4 77666608 77666848 -106621814 - L1M4 LINE L1 -5930 612 354 1796 162 52 38 chr4 77666848 77667213 -106621449 + MLT1A2 LTR MaLR 1 370 -4 351 249 117 86 chr4 77667216 77667413 -106621249 - L1M4 LINE L1 -6183 359 157 1114 192 113 65 chr4 77667413 77667829 -106620833 - LTR8A LTR ERV1 0 727 292 2293 95 0 7 chr4 77667860 77668156 -106620506 - AluSg1 SINE Alu -15 294 1 850 198 65 145 chr4 77668228 77668410 -106620252 - LTR8 LTR ERV1 -439 288 120 2046 133 0 34 chr4 77668410 77668732 -106619930 + AluJb SINE Alu 1 311 -1 850 198 65 145 chr4 77668732 77668841 -106619821 - LTR8 LTR ERV1 -607 120 4 595 232 39 0 chr4 77668842 77668997 -106619665 - L1M4 LINE L1 -6381 161 1 1161 229 206 32 chr4 77669022 77669484 -106619178 + MLT1G LTR MaLR 32 573 -17 312 120 0 0 chr4 77670278 77670328 -106618334 + (TTG)n Simple_repeat Simple_repeat 3 52 0 2006 125 29 0 chr4 77670328 77670600 -106618062 - AluSx SINE Alu -32 280 1 2000 143 3 16 chr4 77670665 77670979 -106617683 - AluJb SINE Alu -1 311 2 2491 75 3 0 chr4 77671182 77671489 -106617173 + AluY SINE Alu 1 308 -3 371 276 103 19 chr4 77671675 77671831 -106616831 - L2 LINE L2 -2 3311 3143 520 119 36 0 chr4 77671886 77671970 -106616692 + FRAM SINE Alu 69 155 -21 334 231 129 48 chr4 77671970 77672156 -106616506 - L2 LINE L2 -182 3131 2931 1893 107 19 7 chr4 77672156 77672426 -106616236 - THE1C LTR MaLR 0 375 103 4894 86 105 11 chr4 77672427 77673140 -106615522 + LTR17 LTR ERV1 1 780 0 13764 107 38 50 chr4 77673142 77673475 -106615187 + HERV17 LTR ERV1 3 338 -8288 2927 10 0 0 chr4 77673475 77673786 -106614876 - AluY SINE Alu 0 311 1 13764 107 38 50 chr4 77673786 77675782 -106612880 + HERV17 LTR ERV1 338 2305 -6321 1634 166 4 14 chr4 77676084 77676362 -106612300 - AluSx SINE Alu -37 275 1 2487 66 0 3 chr4 77676372 77676674 -106611988 - AluY SINE Alu -8 303 3 1939 144 0 27 chr4 77677398 77677696 -106610966 + AluJb SINE Alu 1 290 -22 2512 57 0 20 chr4 77678973 77679273 -106609389 + AluY SINE Alu 1 294 -17 196 184 0 0 chr4 77679367 77679405 -106609257 - L2 LINE L2 -12 3301 3264 29 47 0 0 chr4 77679666 77679709 -106608953 + AT_rich Low_complexity Low_complexity 1 43 0 1656 166 7 10 chr4 77680708 77680997 -106607665 + AluJb SINE Alu 4 291 -21 2028 135 6 13 chr4 77681701 77682013 -106606649 + AluSx SINE Alu 1 310 -2 1708 118 0 12 chr4 77682763 77683008 -106605654 - AluJb SINE Alu -8 304 63 464 225 77 41 chr4 77683245 77683414 -106605248 - L1MC5 LINE L1 -36 7925 7751 442 97 56 0 chr4 77685534 77685606 -106603056 + L1MA6 LINE L1 6220 6295 -5 435 282 191 8 chr4 77686744 77687089 -106601573 - L2 LINE L2 -236 3036 2627 813 282 226 5 chr4 77687387 77687948 -106600714 - L2 LINE L2 -685 2629 1945 361 178 15 5 chr4 77688028 77688132 -106600530 - L1 LINE L1 -2899 3247 3144 14199 36 7 1 chr4 77688338 77689985 -106598677 + HERV17 LTR ERV1 2291 3947 -4679 8421 71 1 0 chr4 77689978 77691005 -106597657 + HERV17 LTR ERV1 7599 8626 0 * 4975 87 99 10 chr4 77691005 77691721 -106596941 + LTR17 LTR ERV1 1 780 0 837 87 0 0 chr4 77691721 77691824 -106596838 - THE1C LTR MaLR -270 105 3 1572 252 151 58 chr4 77691824 77692033 -106596629 - L2 LINE L2 -376 2938 2750 1989 116 28 7 chr4 77692033 77692318 -106596344 - AluJb SINE Alu -10 302 12 1572 252 151 58 chr4 77692318 77693031 -106595631 - L2 LINE L2 -564 2750 1931 509 264 180 17 chr4 77693153 77693498 -106595164 + MLT1I LTR MaLR 1 401 -8 2196 109 0 13 chr4 77693666 77693968 -106594694 - AluSx SINE Alu -4 308 11 256 266 16 0 chr4 77693968 77694032 -106594630 - Tigger3(Golem) DNA MER2_type -2963 66 2 * 348 222 74 0 chr4 77694032 77694112 -106594550 + MER21B LTR ERV1 19 104 -759 266 214 43 0 chr4 77694144 77694214 -106594448 + MER21B LTR ERV1 98 170 -693 1538 234 61 42 chr4 77694259 77694737 -106593925 + MER21B LTR ERV1 297 783 -80 25 31 0 0 chr4 77695023 77695055 -106593607 + AT_rich Low_complexity Low_complexity 1 32 0 424 207 45 45 chr4 77695315 77695426 -106593236 - L2 LINE L2 -4 3268 3158 2269 81 13 16 chr4 77695450 77695758 -106592904 - AluSp SINE Alu -6 307 1 198 0 0 0 chr4 77697064 77697086 -106591576 + (TG)n Simple_repeat Simple_repeat 1 22 0 298 250 21 10 chr4 77697541 77697637 -106591025 - MIR SINE MIR 0 262 166 424 262 48 0 chr4 77697715 77697841 -106590821 - MIR SINE MIR -123 139 8 542 92 11 0 chr4 77697946 77698033 -106590629 + Alu SINE Alu 225 312 0 840 216 12 6 chr4 77698271 77698433 -106590229 + FRAM SINE Alu 1 163 -3 182 37 37 0 chr4 77698464 77698491 -106590171 + (TG)n Simple_repeat Simple_repeat 2 29 0 1824 169 0 0 chr4 77698834 77699129 -106589533 + AluJb SINE Alu 1 295 -17 188 0 74 0 chr4 77699589 77699616 -106589046 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 2580 74 0 0 chr4 77699616 77699941 -106588721 - L1PB1 LINE L1 -7 6144 5820 452 226 316 0 chr4 77699971 77700161 -106588501 + MIR SINE MIR 13 262 0 1918 140 9 22 chr4 77700270 77700585 -106588077 - AluJo SINE Alu -1 311 1 21 0 0 0 chr4 77700585 77700606 -106588056 + AT_rich Low_complexity Low_complexity 1 21 0 1041 170 14 64 chr4 77700620 77700838 -106587824 - AluJo SINE Alu -74 238 32 788 157 116 14 chr4 77702240 77702430 -106586232 - AluJb SINE Alu 0 326 122 366 23 0 0 chr4 77703442 77703485 -106585177 + (TG)n Simple_repeat Simple_repeat 2 44 0 416 211 0 13 chr4 77703503 77703579 -106585083 + Tigger1 DNA MER2_type 2344 2418 0 2231 123 3 3 chr4 77703600 77703901 -106584761 - AluSx SINE Alu -11 301 1 200 320 80 0 chr4 77704373 77704448 -106584214 + MIR3 SINE MIR 115 195 -13 2665 37 0 0 chr4 77706530 77706830 -106581832 + AluY SINE Alu 1 300 -11 1849 106 73 4 chr4 77707236 77707509 -106581153 + AluSx SINE Alu 1 292 -20 251 230 18 0 chr4 77708325 77708395 -106580267 - MIR SINE MIR -67 141 79 301 256 99 8 chr4 77708423 77708544 -106580118 - LTR33 LTR ERVL -389 132 1 2309 108 0 0 chr4 77708619 77708916 -106579746 - AluSx SINE Alu -15 297 1 1502 140 31 0 chr4 77708980 77709208 -106579454 - MER46A DNA MER2_type 0 236 2 1759 250 72 31 chr4 77709494 77710225 -106578437 - L2 LINE L2 -1419 1895 1135 275 253 13 13 chr4 77710206 77710281 -106578381 - L2 LINE L2 -60 3212 3138 * 490 132 0 0 chr4 77710873 77710949 -106577713 - MLT1B LTR MaLR -302 88 13 1001 274 49 65 chr4 77710985 77711179 -106577483 - LTR16A LTR ERVL -9 441 246 1555 175 7 38 chr4 77711179 77711506 -106577156 - AluJo SINE Alu 0 318 1 1001 274 49 65 chr4 77711506 77711748 -106576914 - LTR16A LTR ERVL -204 246 8 239 183 163 124 chr4 77711755 77711908 -106576754 - L1MC5 LINE L1 -773 7188 7030 1915 138 26 26 chr4 77711916 77712228 -106576434 - AluJo SINE Alu 0 312 1 521 136 280 114 chr4 77712284 77712357 -106576305 + ORSL DNA AcHobo 1 61 -214 1577 123 0 0 chr4 77712357 77712569 -106576093 + AluSg/x SINE Alu 82 293 -17 2489 70 0 0 chr4 77712573 77712872 -106575790 + AluY SINE Alu 1 299 -12 521 136 280 114 chr4 77712872 77713029 -106575633 + ORSL DNA AcHobo 63 275 0 486 197 161 105 chr4 77713031 77713336 -106575326 - MER102b DNA MER1_type -17 324 3 23 0 0 0 chr4 77714279 77714302 -106574360 + AT_rich Low_complexity Low_complexity 1 23 0 2166 113 0 0 chr4 77714434 77714741 -106573921 - AluSx SINE Alu 0 307 1 1845 141 3 11 chr4 77715247 77715530 -106573132 + MER2 DNA MER2_type 1 281 -64 2355 110 0 0 chr4 77715533 77715841 -106572821 - AluSx SINE Alu -2 310 3 183 205 0 0 chr4 77716532 77716571 -106572091 + (CA)n Simple_repeat Simple_repeat 2 40 0 404 266 7 50 chr4 77716618 77716675 -106571987 + MER5A DNA MER1_type 19 77 -112 2330 91 0 35 chr4 77716675 77716993 -106571669 + AluSg SINE Alu 1 307 -3 468 0 0 0 chr4 77716993 77717045 -106571617 + (TA)n Simple_repeat Simple_repeat 2 53 0 404 266 7 50 chr4 77717045 77717125 -106571537 + MER5A DNA MER1_type 75 151 -38 622 217 7 0 chr4 77717162 77717300 -106571362 + MIR SINE MIR 124 262 0 662 172 16 152 chr4 77717523 77717568 -106571094 - MER20 DNA MER1_type -6 213 164 1774 176 28 0 chr4 77717568 77717852 -106570810 - AluJb SINE Alu -15 297 6 662 172 16 152 chr4 77717852 77718050 -106570612 - MER20 DNA MER1_type -55 164 3 2874 166 74 74 chr4 77718417 77719144 -106569518 - LTR8A LTR ERV1 0 727 1 21 0 0 0 chr4 77719159 77719180 -106569482 + AT_rich Low_complexity Low_complexity 1 21 0 271 168 0 0 chr4 77719180 77719234 -106569428 - Alu SINE Alu -1 301 253 2171 109 3 7 chr4 77719315 77719617 -106569045 + AluSx SINE Alu 5 305 -7 371 261 52 8 chr4 77720606 77720740 -106567922 - MER112 DNA MER1_type -93 167 28 2466 74 7 0 chr4 77720882 77721181 -106567481 - AluSp SINE Alu -12 301 1 2002 164 3 3 chr4 77721429 77721740 -106566922 - AluJb SINE Alu -1 311 1 226 259 74 9 chr4 77722569 77722677 -106565985 - MIR SINE MIR -48 214 100 945 129 0 7 chr4 77722844 77722983 -106565679 - FLAM_C SINE Alu -5 138 1 601 238 108 5 chr4 77723134 77723357 -106565305 - L1MC4 LINE L1 -1 8041 7796 21 0 0 0 chr4 77724038 77724059 -106564603 + AT_rich Low_complexity Low_complexity 1 21 0 2156 109 3 29 chr4 77724220 77724531 -106564131 - AluSq SINE Alu -10 303 1 2158 108 3 7 chr4 77724539 77724835 -106563827 - AluSq SINE Alu -18 295 1 434 261 17 0 chr4 77725337 77725456 -106563206 - L1MC4 LINE L1 -645 7397 7277 1825 160 22 78 chr4 77725490 77725890 -106562772 - MLT1B LTR MaLR 0 390 13 453 267 96 0 chr4 77725926 77726061 -106562601 - LTR16A LTR ERVL -9 441 294 1687 121 23 19 chr4 77726519 77726776 -106561886 - AluJb SINE Alu -3 309 52 761 180 0 16 chr4 77727093 77727221 -106561441 - FLAM_A SINE Alu -7 126 1 2251 119 0 0 chr4 77727250 77727545 -106561117 - AluSx SINE Alu -17 295 1 1926 117 48 14 chr4 77728293 77728584 -106560078 + AluSx SINE Alu 1 301 -11 2690 117 5 0 chr4 77728584 77728968 -106559694 + L1PA15 LINE L1 5759 6144 -21 2256 103 3 3 chr4 77729981 77730283 -106558379 - AluSc SINE Alu -7 302 1 2518 69 0 7 chr4 77731273 77731579 -106557083 + AluY SINE Alu 1 304 -7 345 220 82 69 chr4 77732336 77732495 -106556167 - MER5B DNA MER1_type -16 162 2 194 208 0 65 chr4 77732846 77732923 -106555739 - L2 LINE L2 -78 3235 3164 2434 89 0 3 chr4 77733067 77733418 -106555244 + AluSx SINE Alu 1 350 0 212 317 17 0 chr4 77734439 77734499 -106554163 + MIR3 SINE MIR 110 170 -38 311 241 301 8 chr4 77734526 77734659 -106554003 - MER5B DNA MER1_type -6 172 1 414 240 85 23 chr4 77734677 77734806 -106553856 + MIR SINE MIR 34 170 -92 1009 167 0 29 chr4 77734908 77735082 -106553580 - L1M3 LINE L1 -421 5762 5594 262 370 134 26 chr4 77735099 77735404 -106553258 + L2 LINE L2 2915 3252 -20 675 206 7 0 chr4 77735697 77735833 -106552829 + MIR SINE MIR 124 260 -2 731 196 83 44 chr4 77736482 77736711 -106551951 - L1MB8 LINE L1 -5 6173 5936 2355 209 104 22 chr4 77736769 77737305 -106551357 - MLT1E LTR MaLR 0 593 14 236 261 0 15 chr4 77737839 77737904 -106550758 - MLT1K LTR MaLR -27 561 498 693 288 21 25 chr4 77739735 77739971 -106548691 - MIR SINE MIR -9 253 19 189 269 104 0 chr4 77740087 77740154 -106548508 + MIR SINE MIR 118 191 -71 382 280 127 50 chr4 77741157 77741358 -106547304 + MIR SINE MIR 20 253 -9 490 223 33 25 chr4 77741556 77741677 -106546985 - L2 LINE L2 -4 3309 3188 2205 113 0 0 chr4 77742296 77742579 -106546083 + AluSx SINE Alu 1 283 -29 388 268 94 14 chr4 77743014 77743152 -106545510 - MIR3 SINE MIR -23 185 37 3031 122 138 199 chr4 77743171 77743923 -106544739 - L1MCa LINE L1 -3878 2548 1720 1260 130 0 0 chr4 77743923 77744100 -106544562 - FRAM SINE Alu 0 176 1 3031 122 138 199 chr4 77744100 77744497 -106544165 - L1MCa LINE L1 -4706 1720 1301 1945 142 0 41 chr4 77744497 77744780 -106543882 - AluSx SINE Alu -4 308 38 2266 93 10 0 chr4 77744780 77745080 -106543582 + AluSc SINE Alu 1 303 -6 1945 142 0 41 chr4 77745080 77745112 -106543550 - AluSx SINE Alu -274 38 6 360 85 34 0 chr4 77745112 77745171 -106543491 + AluSp/q SINE Alu 243 303 0 1268 110 0 0 chr4 77745181 77745345 -106543317 + AluSg/x SINE Alu 128 291 -19 552 294 47 6 chr4 77745352 77745522 -106543140 - MIR SINE MIR -84 178 2 650 190 13 9 chr4 77745522 77745649 -106543013 - Charlie3 DNA MER1_type -8 2702 248 229 59 0 0 chr4 77745647 77745681 -106542981 - Charlie3 DNA MER1_type -2676 34 1 * 855 262 166 23 chr4 77745721 77746223 -106542439 - L2 LINE L2 -20 3293 2714 298 294 59 0 chr4 77747713 77747798 -106540864 - MIR3 SINE MIR -6 202 113 222 424 21 17 chr4 77748063 77748301 -106540361 - L3 LINE CR1 -753 824 586 831 285 143 45 chr4 77749074 77749562 -106539100 + L2 LINE L2 2285 2820 -494 888 198 32 103 chr4 77749599 77749851 -106538811 - MER21B LTR ERV1 -144 719 486 1422 109 9 14 chr4 77749851 77750061 -106538601 + Tigger2a DNA MER2_type 1 209 -225 23 0 0 0 chr4 77750194 77750217 -106538445 + AT_rich Low_complexity Low_complexity 1 23 0 507 310 163 10 chr4 77751098 77751160 -106537502 - L2 LINE L2 -508 2806 2755 216 0 0 0 chr4 77751160 77751184 -106537478 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 507 310 163 10 chr4 77751184 77751421 -106537241 - L2 LINE L2 -559 2755 2461 714 214 65 45 chr4 77753023 77753224 -106535438 - MER21B LTR ERV1 -658 205 1 193 307 27 0 chr4 77753229 77753304 -106535358 + L2 LINE L2 2830 2906 -408 2230 106 0 0 chr4 77753411 77753734 -106534928 + AluSq SINE Alu 1 323 0 206 314 50 25 chr4 77754132 77754253 -106534409 - L2 LINE L2 -641 2673 2550 4589 195 94 55 chr4 77754308 77755357 -106533305 - L1MC4 LINE L1 -1 8041 6933 496 178 238 0 chr4 77755357 77755458 -106533204 - FLAM_A SINE Alu -8 125 1 4589 195 94 55 chr4 77755458 77755679 -106532983 - L1MC4 LINE L1 -1109 6933 6722 221 234 16 0 chr4 77756406 77756470 -106532192 + (CA)n Simple_repeat Simple_repeat 2 66 0 381 226 110 37 chr4 77757311 77757475 -106531187 - L1ME4a LINE L1 -2 6119 5944 2236 129 0 0 chr4 77757536 77757847 -106530815 - AluSx SINE Alu 0 312 2 555 291 23 6 chr4 77758184 77758359 -106530303 - L1ME4a LINE L1 -412 5709 5532 1463 148 0 0 chr4 77758431 77758640 -106530022 + AluJo SINE Alu 1 209 -103 2009 108 11 7 chr4 77758740 77759027 -106529635 - AluSx SINE Alu -24 288 1 273 123 41 41 chr4 77759081 77759154 -106529508 + Charlie5 DNA MER1_type 2542 2614 0 22 35 0 0 chr4 77760053 77760082 -106528580 + AT_rich Low_complexity Low_complexity 1 29 0 2078 125 60 38 chr4 77760474 77760841 -106527821 - THE1C LTR MaLR 0 375 1 1431 151 0 0 chr4 77761422 77761640 -106527022 + AluSg/x SINE Alu 83 300 -12 1050 169 12 12 chr4 77761643 77761809 -106526853 + AluJo/FRAM SINE Alu 137 302 0 23 33 0 0 chr4 77761945 77761975 -106526687 + AT_rich Low_complexity Low_complexity 1 30 0 2265 71 55 0 chr4 77762668 77762977 -106525685 - L1PA13 LINE L1 -3 6160 5835 1514 116 19 0 chr4 77762977 77763221 -106525441 + L1PA13 LINE L1 5597 5854 -300 720 236 157 18 chr4 77764734 77764963 -106523699 + MIR SINE MIR 2 262 0 2204 79 14 4 chr4 77765152 77765536 -106523126 - AluSx SINE Alu 0 387 1 310 347 25 0 chr4 77765790 77765911 -106522751 - L1ME LINE L1 -294 5827 5704 697 284 72 30 chr4 77766360 77766596 -106522066 - MER74A LTR ERVL -278 280 35 244 329 41 0 chr4 77767651 77767724 -106520938 + Zaphod DNA AcHobo 3 78 -615 369 327 123 6 chr4 77767818 77767980 -106520682 + MER115 DNA AcHobo 194 374 -319 915 261 100 61 chr4 77768134 77768574 -106520088 - MLT1J LTR MaLR -54 457 1 12761 205 32 13 chr4 77769142 77772555 -106516107 - L1MC1 LINE L1 0 6613 3110 2106 132 0 10 chr4 77772555 77772859 -106515803 - AluSx SINE Alu -11 301 1 12761 205 32 13 chr4 77772859 77773605 -106515057 - L1MC1 LINE L1 -3503 3110 2379 570 186 12 19 chr4 77773814 77773975 -106514687 - L1MC1 LINE L1 -3971 2455 2296 * 6663 152 35 29 chr4 77773958 77775146 -106513516 - L1MC1 LINE L1 -5227 1199 4 330 323 10 0 chr4 77775902 77775998 -106512664 - L2 LINE L2 0 3313 3217 228 135 0 0 chr4 77777148 77777185 -106511477 + (CGTG)n Simple_repeat Simple_repeat 2 38 0 23 33 0 0 chr4 77777454 77777484 -106511178 + AT_rich Low_complexity Low_complexity 1 30 0 203 262 119 0 chr4 77777506 77777590 -106511072 - MIR SINE MIR -13 249 156 1465 49 5 0 chr4 77777910 77778094 -106510568 - AluY SINE Alu 0 311 127 241 271 56 21 chr4 77778446 77778590 -106510072 - L1ME4a LINE L1 -14 6107 5959 1277 237 75 35 chr4 77778661 77779197 -106509465 - L1MCc LINE L1 -4578 2544 1988 920 149 62 19 chr4 77779204 77779365 -106509297 - FRAM SINE Alu -11 165 1 338 195 13 0 chr4 77779377 77779454 -106509208 + (TA)n Simple_repeat Simple_repeat 2 79 0 351 0 0 0 chr4 77779454 77779493 -106509169 + (GA)n Simple_repeat Simple_repeat 2 40 0 770 120 0 51 chr4 77779494 77779611 -106509051 - FLAM_C SINE Alu -32 111 1 4014 235 99 66 chr4 77779612 77780788 -106507874 - L1MCc LINE L1 -4903 1520 521 1094 31 78 0 chr4 77780788 77780916 -106507746 - MER85 DNA T2_type -1 138 1 4014 235 99 66 chr4 77780916 77781439 -106507223 - L1MCc LINE L1 -5902 521 17 342 252 85 69 chr4 77781499 77781580 -106507082 - L1ME4a LINE L1 -304 5817 5739 2411 84 10 0 chr4 77781580 77781879 -106506783 - AluSq SINE Alu -11 302 1 342 252 85 69 chr4 77781879 77782043 -106506619 - L1ME4a LINE L1 -382 5739 5568 1766 166 14 14 chr4 77782104 77782399 -106506263 + AluJo SINE Alu 1 295 -17 338 258 43 0 chr4 77783805 77783898 -106504764 + MIR SINE MIR 110 206 -56 4068 97 5 0 chr4 77784089 77784647 -106504015 - L1PA7 LINE L1 -3462 2684 2124 * 19713 81 9 2 chr4 77784646 77785743 -106502919 + L1PA7 LINE L1 2668 3756 -2398 1500 110 4 73 chr4 77785743 77785989 -106502673 + AluSc SINE Alu 69 297 -12 19713 81 9 2 chr4 77785989 77788356 -106500306 + L1PA7 LINE L1 3756 6152 -2 222 250 31 16 chr4 77788655 77788719 -106499943 + MIR SINE MIR 142 206 -56 1922 114 4 8 chr4 77790274 77790538 -106498124 + AluSx SINE Alu 35 297 -15 439 0 66 0 chr4 77790719 77790780 -106497882 + (TCTA)n Simple_repeat Simple_repeat 3 67 0 1781 167 3 7 chr4 77791289 77791582 -106497080 - AluJb SINE Alu -16 296 5 270 329 86 29 chr4 77791874 77792014 -106496648 - MIR3 SINE MIR -59 149 2 470 191 0 19 chr4 77792354 77792483 -106496179 + MER5A DNA MER1_type 7 178 0 2057 114 4 0 chr4 77792552 77792825 -106495837 - AluSq SINE Alu -39 274 1 2542 75 12 0 chr4 77792835 77793170 -106495492 - L1PB1 LINE L1 -1 6150 5812 380 224 0 66 chr4 77793222 77793298 -106495364 + Charlie1 DNA MER1_type 1 71 -2690 * 1393 154 37 11 chr4 77793296 77793569 -106495093 + Charlie1 DNA MER1_type 2345 2624 -137 576 173 91 68 chr4 77793577 77793749 -106494913 + Charlie1 DNA MER1_type 2526 2706 -55 1928 146 3 7 chr4 77793749 77794044 -106494618 - AluJb SINE Alu -18 294 1 576 173 91 68 chr4 77794044 77794091 -106494571 + Charlie1 DNA MER1_type 2706 2750 -11 369 0 0 0 chr4 77795235 77795276 -106493386 + (CA)n Simple_repeat Simple_repeat 1 41 0 221 304 0 0 chr4 77797218 77797274 -106491388 + (CA)n Simple_repeat Simple_repeat 2 57 0 2178 115 0 7 chr4 77797332 77797620 -106491042 + AluSx SINE Alu 1 286 -26 2079 137 7 3 chr4 77799119 77799426 -106489236 - AluSx SINE Alu -4 308 1 559 272 33 17 chr4 77800038 77800218 -106488444 - LTR16A LTR ERVL 0 450 268 552 270 86 17 chr4 77800391 77800624 -106488038 - MLT1L LTR MaLR -1 614 366 1847 237 70 4 chr4 77800712 77801356 -106487306 - L1MB4 LINE L1 0 6180 5477 667 211 53 72 chr4 77801371 77801579 -106487083 - MLT1L LTR MaLR -372 243 40 416 229 69 30 chr4 77801625 77801756 -106486906 - MER5B DNA MER1_type -38 140 5 923 256 119 28 chr4 77802356 77802743 -106485919 + L2 LINE L2 2209 2630 -684 607 307 128 6 chr4 77802759 77803104 -106485558 + L2 LINE L2 2814 3200 -113 183 171 57 0 chr4 77803136 77803171 -106485491 + L2 LINE L2 3202 3238 -75 1221 121 6 0 chr4 77803175 77803348 -106485314 - AluSg/x SINE Alu -2 310 137 354 192 0 26 chr4 77803400 77803478 -106485184 - MIR SINE MIR -110 152 77 249 221 39 26 chr4 77804871 77804948 -106483714 + LTR16A LTR ERVL 93 170 -280 841 251 72 0 chr4 77805403 77805626 -106483036 + MIR SINE MIR 2 240 -22 2337 78 100 0 chr4 77806245 77806576 -106482086 + L1PA10 LINE L1 5789 6152 -16 279 184 72 136 chr4 77806879 77807004 -106481658 + L2 LINE L2 3145 3261 -11 321 214 0 14 chr4 77807411 77807481 -106481181 + Charlie8 DNA MER1_type 1359 1427 -990 1732 136 0 37 chr4 77807989 77808262 -106480400 - AluSx SINE Alu -13 299 37 438 253 199 7 chr4 77808282 77808428 -106480234 + MIR SINE MIR 86 259 -3 552 255 99 10 chr4 77808601 77808793 -106479869 + MIR SINE MIR 17 225 -37 2563 47 3 7 chr4 77808819 77809119 -106479543 - AluY SINE Alu -12 299 1 339 269 45 37 chr4 77809135 77809269 -106479393 + MIR SINE MIR 74 208 -54 3103 171 32 3 chr4 77810121 77810706 -106477956 + L1MB8 LINE L1 5571 6172 -6 5686 119 23 11 chr4 77810706 77811604 -106477058 + L1MA8 LINE L1 5382 6290 -1 6201 44 0 1 chr4 77811678 77812421 -106476241 + L1PA6 LINE L1 5413 6154 0 2348 100 0 7 chr4 77813320 77813630 -106475032 - AluSx SINE Alu -4 308 1 1141 38 0 0 chr4 77813639 77813770 -106474892 - AluYa5 SINE Alu -18 293 163 217 159 16 79 chr4 77815224 77815287 -106473375 - L2 LINE L2 -2835 479 421 417 194 129 16 chr4 77816187 77816311 -106472351 + MIR3 SINE MIR 55 192 -16 287 277 0 12 chr4 77816616 77816699 -106471963 + MIR SINE MIR 16 97 -111 2331 80 10 0 chr4 77817407 77817696 -106470966 + AluY SINE Alu 1 292 -19 1762 119 19 77 chr4 77818314 77818665 -106469997 - AluSx SINE Alu 0 333 1 271 212 59 24 chr4 77819055 77819140 -106469522 + MIR SINE MIR 55 142 -66 2307 96 3 0 chr4 77819606 77819897 -106468765 - AluSp SINE Alu -21 292 1 2133 124 7 0 chr4 77820324 77820630 -106468032 + AluSx SINE Alu 1 308 -4 203 59 0 29 chr4 77820796 77820830 -106467832 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 623 135 0 9 chr4 77821492 77821603 -106467059 + (GGGA)n Simple_repeat Simple_repeat 4 113 0 209 321 0 0 chr4 77821734 77821815 -106466847 + L2 LINE L2 3177 3257 -15 213 39 0 0 chr4 77821817 77821843 -106466819 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 903 135 0 0 chr4 77821890 77822023 -106466639 + FLAM_C SINE Alu 11 143 0 283 315 24 24 chr4 77822052 77822179 -106466483 + L2 LINE L2 3137 3263 -9 2440 90 3 0 chr4 77822233 77822543 -106466119 + AluSp SINE Alu 1 311 -2 2033 161 43 5 chr4 77822857 77823230 -106465432 + MLT1B LTR MaLR 1 387 -3 580 83 21 0 chr4 77824498 77824594 -106464068 + (TC)n Simple_repeat Simple_repeat 2 99 0 291 297 203 0 chr4 77824826 77824964 -106463698 + LTR33 LTR ERVL 49 214 -307 225 0 0 0 chr4 77825213 77825238 -106463424 + (CTG)n Simple_repeat Simple_repeat 2 26 0 523 292 40 86 chr4 77825239 77825612 -106463050 + LTR16B LTR ERVL 109 464 0 260 229 29 14 chr4 77825616 77825686 -106462976 + LTR33 LTR ERVL 451 521 0 419 196 233 63 chr4 77827627 77827816 -106460846 - MLT1J LTR MaLR -2 509 289 251 192 101 16 chr4 77827932 77828023 -106460639 - MLT1J1 LTR MaLR -340 106 47 986 244 24 21 chr4 77828296 77828583 -106460079 - LTR16B LTR ERVL -8 456 169 231 163 0 0 chr4 77828875 77828918 -106459744 + L2 LINE L2 3270 3312 -1 2182 129 0 0 chr4 77829765 77830067 -106458595 + AluSx SINE Alu 1 302 -10 183 184 0 0 chr4 77830713 77830751 -106457911 + (CATG)n Simple_repeat Simple_repeat 3 40 0 2125 197 29 71 chr4 77830802 77831380 -106457282 + MLT2B3 LTR ERVL 1 554 0 221 128 43 21 chr4 77831462 77831509 -106457153 + (TGGA)n Simple_repeat Simple_repeat 1 48 0 1594 169 3 62 chr4 77832586 77832894 -106455768 - AluJo SINE Alu -22 290 1 2099 136 7 0 chr4 77833763 77834071 -106454591 + AluSx SINE Alu 1 310 -2 2184 104 3 3 chr4 77834581 77834878 -106453784 - AluSx SINE Alu -15 297 1 794 169 29 169 chr4 77835685 77835964 -106452698 + MIR SINE MIR 2 241 -21 2282 97 3 0 chr4 77836042 77836341 -106452321 + AluSx SINE Alu 1 300 -12 1898 198 46 31 chr4 77836878 77837333 -106451329 - MLT1C LTR MaLR 0 467 6 260 225 108 54 chr4 77838261 77838372 -106450290 - L1ME LINE L1 -311 5810 5694 1759 185 10 0 chr4 77838381 77838679 -106449983 + AluJo SINE Alu 1 301 -11 414 303 165 12 chr4 77838692 77838946 -106449716 - L2 LINE L2 0 3313 3021 590 243 6 0 chr4 77839637 77839814 -106448848 + (TG)n Simple_repeat Simple_repeat 1 178 0 2051 238 52 30 chr4 77839821 77840364 -106448298 - MLT1H1 LTR MaLR 0 555 1 570 205 50 19 chr4 77840377 77840538 -106448124 - L1MC5 LINE L1 -36 7925 7760 281 167 56 0 chr4 77840758 77840812 -106447850 + MIR SINE MIR 30 86 -122 313 216 224 0 chr4 77840886 77840978 -106447684 - MIR SINE MIR -63 145 46 519 239 199 24 chr4 77841240 77841491 -106447171 - L1MC4a LINE L1 -1824 5984 5690 24 32 0 0 chr4 77843345 77843376 -106445286 + AT_rich Low_complexity Low_complexity 1 31 0 957 115 0 0 chr4 77843388 77843518 -106445144 - AluJb SINE Alu -12 300 171 190 297 0 31 chr4 77843683 77843747 -106444915 + MIR SINE MIR 82 143 -119 222 254 0 30 chr4 77843784 77843851 -106444811 - MIR SINE MIR -49 213 149 959 263 111 58 chr4 77843963 77844383 -106444279 + MLT1L LTR MaLR 103 552 -63 2229 105 0 10 chr4 77844383 77844688 -106443974 + AluSg SINE Alu 2 303 -7 959 263 111 58 chr4 77844688 77844746 -106443916 + MLT1L LTR MaLR 552 606 -9 277 253 0 103 chr4 77844842 77845016 -106443646 - MER5B DNA MER1_type 0 178 23 586 240 72 0 chr4 77845143 77845268 -106443394 - MER94 DNA DNA 0 134 1 2257 96 0 0 chr4 77845406 77845725 -106442937 - AluSq SINE Alu 0 319 1 689 251 238 33 chr4 77846656 77847110 -106441552 - MLT1H1 LTR MaLR 0 555 9 180 286 191 0 chr4 77847522 77847585 -106441077 - L2 LINE L2 -1 3312 3238 2254 100 0 14 chr4 77847664 77847955 -106440707 + AluSc SINE Alu 1 287 -22 1475 117 9 0 chr4 77848721 77848935 -106439727 + AluY SINE Alu 77 292 -19 2179 117 0 0 chr4 77851501 77851784 -106436878 - AluSx SINE Alu -16 296 14 1977 108 11 7 chr4 77851792 77852069 -106436593 - AluSc SINE Alu -31 278 1 2375 85 16 3 chr4 77852922 77853227 -106435435 + AluSp SINE Alu 1 309 -4 194 255 0 0 chr4 77854380 77854427 -106434235 + MIR SINE MIR 184 230 -32 2396 68 0 0 chr4 77857049 77857341 -106431321 + AluY SINE Alu 1 292 -19 333 324 116 77 chr4 77857459 77857712 -106430950 - L1M4 LINE L1 -1973 4173 3898 1870 152 3 19 chr4 77857712 77858021 -106430641 - AluJb SINE Alu -8 304 1 333 324 116 77 chr4 77858021 77858156 -106430506 - L1M4 LINE L1 -2248 3898 3770 611 203 115 100 chr4 77858156 77858442 -106430220 - L1ME4a LINE L1 -117 6004 5711 2104 139 3 0 chr4 77858442 77858743 -106429919 + AluSx SINE Alu 1 302 -10 611 203 115 100 chr4 77858743 77858805 -106429857 - L1ME4a LINE L1 -410 5711 5651 1732 206 67 31 chr4 77858805 77859251 -106429411 - MLT1C LTR MaLR 0 467 6 398 278 85 72 chr4 77859292 77859515 -106429147 - L1ME4a LINE L1 -503 5618 5393 2266 68 0 17 chr4 77859515 77859807 -106428855 + AluY SINE Alu 1 287 -24 228 300 45 18 chr4 77859863 77859973 -106428689 - L1ME4a LINE L1 -2442 5366 5254 879 147 23 0 chr4 77860076 77860205 -106428457 - FLAM_A SINE Alu -1 132 1 2299 94 3 0 chr4 77860419 77860718 -106427944 - AluSc SINE Alu -5 304 5 1035 161 21 98 chr4 77860759 77860995 -106427667 + MER20 DNA MER1_type 1 218 -1 1568 211 91 35 chr4 77861308 77861683 -106426979 + MSTD LTR MaLR 1 396 0 414 285 31 62 chr4 77862029 77862222 -106426440 - MER5A DNA MER1_type -2 187 1 358 297 52 65 chr4 77862331 77862637 -106426025 - L1ME4a LINE L1 -1755 4391 4090 276 282 61 28 chr4 77863318 77863499 -106425163 - L1M4 LINE L1 -2407 3739 3553 1113 171 29 107 chr4 77863503 77863773 -106424889 - LTR37A LTR ERV1 0 426 187 2490 71 0 0 chr4 77863773 77864070 -106424592 + AluY SINE Alu 1 297 -14 1113 171 29 107 chr4 77864070 77864145 -106424517 - LTR37A LTR ERV1 -239 187 108 242 77 51 0 chr4 77864163 77864202 -106424460 - L1MC4 LINE L1 -1339 6703 6663 226 292 88 26 chr4 77864672 77864785 -106423877 + L2 LINE L2 1662 1781 -1533 2229 119 0 0 chr4 77865155 77865458 -106423204 - AluSx SINE Alu -9 303 1 3179 178 25 29 chr4 77865617 77866173 -106422489 - MLT2B3 LTR ERVL 0 554 1 1038 251 29 4 chr4 77866876 77867126 -106421536 - MIR SINE MIR 0 262 5 2445 80 0 0 chr4 77867736 77868035 -106420627 - AluSg SINE Alu -11 299 1 429 239 119 50 chr4 77868733 77868892 -106419770 - MLT1J LTR MaLR -337 174 5 358 99 81 0 chr4 77869990 77870101 -106418561 - L1MB3 LINE L1 0 6183 5998 3745 82 6 0 chr4 77870101 77870591 -106418071 - L1P3 LINE L1 -5204 1257 765 285 133 83 0 chr4 77870594 77870654 -106418008 - L1MB3 LINE L1 -693 5490 5426 730 174 30 0 chr4 77870677 77870809 -106417853 - L1MB4 LINE L1 -6 6174 6039 324 197 16 0 chr4 77870932 77870993 -106417669 - MLT1J LTR MaLR -344 167 106 898 260 157 50 chr4 77871073 77871576 -106417086 - MLT1L LTR MaLR -58 557 1 22 35 0 0 chr4 77871583 77871612 -106417050 + AT_rich Low_complexity Low_complexity 1 29 0 1962 153 31 3 chr4 77871722 77872016 -106416646 + AluJb SINE Alu 1 302 -10 1117 203 57 13 chr4 77872820 77873047 -106415615 - MIR SINE MIR -1 261 25 1900 80 0 0 chr4 77873187 77873426 -106415236 - AluY SINE Alu -8 303 65 1630 136 0 39 chr4 77873691 77873949 -106414713 - AluSx SINE Alu -28 284 37 481 253 199 7 chr4 77873969 77874115 -106414547 + MIR SINE MIR 86 259 -3 607 255 99 10 chr4 77874288 77874480 -106414182 + MIR SINE MIR 17 225 -37 2538 47 3 7 chr4 77874506 77874806 -106413856 - AluY SINE Alu -12 299 1 373 269 45 37 chr4 77874822 77874956 -106413706 + MIR SINE MIR 74 208 -54 3270 171 32 3 chr4 77875808 77876393 -106412269 + L1MB8 LINE L1 5571 6172 -6 5728 120 23 13 chr4 77876393 77877291 -106411371 + L1MA8 LINE L1 5381 6290 -1 6320 46 3 7 chr4 77877365 77878110 -106410552 + L1PA6 LINE L1 5413 6154 0 260 225 108 54 chr4 77879312 77879423 -106409239 - L1ME LINE L1 -311 5810 5694 1759 185 10 0 chr4 77879432 77879730 -106408932 + AluJo SINE Alu 1 301 -11 414 303 165 12 chr4 77879743 77879997 -106408665 - L2 LINE L2 0 3313 3021 590 243 6 0 chr4 77880688 77880865 -106407797 + (TG)n Simple_repeat Simple_repeat 1 178 0 2051 238 52 30 chr4 77880872 77881415 -106407247 - MLT1H1 LTR MaLR 0 555 1 570 205 50 19 chr4 77881428 77881589 -106407073 - L1MC5 LINE L1 -36 7925 7760 281 167 56 0 chr4 77881809 77881863 -106406799 + MIR SINE MIR 30 86 -122 313 216 224 0 chr4 77881937 77882029 -106406633 - MIR SINE MIR -63 145 46 519 239 199 24 chr4 77882291 77882542 -106406120 - L1MC4a LINE L1 -1824 5984 5690 24 32 0 0 chr4 77884397 77884428 -106404234 + AT_rich Low_complexity Low_complexity 1 31 0 570 110 0 44 chr4 77884429 77884520 -106404142 - AluJ/FRAM SINE Alu -5 307 221 228 161 0 36 chr4 77884520 77884576 -106404086 + Alu SINE Alu 249 302 0 563 312 6 13 chr4 77884733 77884890 -106403772 - MER5B DNA MER1_type 0 178 23 628 238 63 0 chr4 77885013 77885139 -106403523 - MER94 DNA DNA 0 134 1 2257 96 0 0 chr4 77885277 77885596 -106403066 - AluSq SINE Alu 0 319 1 669 244 240 35 chr4 77886528 77886982 -106401680 - MLT1H1 LTR MaLR 0 555 9 180 286 191 0 chr4 77887394 77887457 -106401205 - L2 LINE L2 -1 3312 3238 2254 100 0 14 chr4 77887536 77887827 -106400835 + AluSc SINE Alu 1 287 -22 34 24 0 0 chr4 77888503 77888544 -106400118 + AT_rich Low_complexity Low_complexity 1 41 0 246 330 80 0 chr4 77888883 77888983 -106399679 - L2 LINE L2 -653 2661 2554 1942 139 0 62 chr4 77889069 77889392 -106399270 + AluSx SINE Alu 3 305 -7 207 100 0 0 chr4 77889604 77889634 -106399028 + (TG)n Simple_repeat Simple_repeat 1 30 0 434 328 51 23 chr4 77890637 77890814 -106397848 + L2 LINE L2 3076 3257 -15 614 151 14 27 chr4 77891428 77891574 -106397088 + CT-rich Low_complexity Low_complexity 3 146 0 314 328 114 0 chr4 77891684 77891815 -106396847 - L2 LINE L2 -5 3267 3122 407 347 111 0 chr4 77892040 77892256 -106396406 - MIR SINE MIR -2 260 21 1164 224 21 14 chr4 77892838 77893119 -106395543 - LTR16A1 LTR ERVL 0 457 175 289 242 153 48 chr4 77893311 77893435 -106395227 + MIR SINE MIR 15 151 -111 899 223 12 45 chr4 77893777 77894024 -106394638 - L1MC5 LINE L1 -27 7934 7696 383 278 56 0 chr4 77894029 77894155 -106394507 - L1ME1 LINE L1 -4 6162 6030 342 286 60 77 chr4 77894686 77894798 -106393864 - MIR3 SINE MIR -14 194 85 1680 171 53 0 chr4 77894798 77894914 -106393748 + AluJo SINE Alu 1 109 -203 404 37 19 0 chr4 77894914 77894968 -106393694 + (CA)n Simple_repeat Simple_repeat 2 56 0 1680 171 53 0 chr4 77894968 77895132 -106393530 + AluJo SINE Alu 109 296 -16 342 286 60 77 chr4 77895132 77895201 -106393461 - MIR3 SINE MIR -123 85 16 1028 177 72 24 chr4 77895342 77895591 -106393071 + L1MB7 LINE L1 5924 6184 0 373 276 66 21 chr4 77895651 77895909 -106392753 - MLT1L LTR MaLR -155 460 110 239 241 0 103 chr4 77895979 77896066 -106392596 - MLT1L LTR MaLR -537 78 1 305 273 0 0 chr4 77896115 77896181 -106392481 + MIR SINE MIR 5 70 -192 1223 157 61 102 chr4 77896181 77896663 -106391999 + MLT1B LTR MaLR 1 467 0 739 254 16 11 chr4 77896664 77896849 -106391813 + MIR SINE MIR 70 255 -7 843 308 115 47 chr4 77896910 77897550 -106391112 - L2 LINE L2 0 3313 2625 286 231 184 68 chr4 77898278 77898425 -106390237 - MIR3 SINE MIR -6 202 39 321 47 0 0 chr4 77899497 77899540 -106389122 + (TG)n Simple_repeat Simple_repeat 1 43 0 370 179 26 13 chr4 77899621 77899699 -106388963 + L1MC1 LINE L1 3627 3705 -2441 3371 166 79 9 chr4 77899737 77900317 -106388345 - LTR26E LTR ERV1 0 622 2 204 300 0 0 chr4 77900410 77900460 -106388202 - L2 LINE L2 -5 3308 3259 204 326 45 30 chr4 77900505 77900637 -106388025 + L2 LINE L2 3172 3305 -8 449 296 90 36 chr4 77900940 77901163 -106387499 - MLT1K LTR MaLR -18 570 336 256 236 119 70 chr4 77901526 77901700 -106386962 + L1MC1 LINE L1 4813 4977 -1169 1968 122 54 10 chr4 77901700 77902014 -106386648 + AluSq SINE Alu 1 313 0 256 236 119 70 chr4 77902014 77902054 -106386608 + L1MC1 LINE L1 4977 5014 -1132 369 0 0 0 chr4 77902054 77902095 -106386567 + (CA)n Simple_repeat Simple_repeat 1 41 0 256 236 119 70 chr4 77902095 77902181 -106386481 + L1MC1 LINE L1 5014 5094 -1052 339 25 0 0 chr4 77902181 77902221 -106386441 + (GA)n Simple_repeat Simple_repeat 1 40 0 256 236 119 70 chr4 77902221 77902363 -106386299 + L1MC1 LINE L1 5094 5279 -867 469 259 42 53 chr4 77902436 77902573 -106386089 + L1MC1 LINE L1 5476 5612 -509 2102 93 0 52 chr4 77902573 77902883 -106385779 + AluSx SINE Alu 1 294 -18 469 259 42 53 chr4 77902883 77902934 -106385728 + L1MC1 LINE L1 5612 5662 -459 394 218 135 55 chr4 77905006 77905366 -106383296 - MLT1H LTR MaLR -4 538 152 341 249 81 0 chr4 77907915 77908058 -106380604 + L1MC1 LINE L1 5668 5825 -508 * 7146 196 23 27 chr4 77908057 77908297 -106380365 + L1M4 LINE L1 3621 3860 -2286 967 70 86 0 chr4 77908297 77908425 -106380237 + MER85 DNA T2_type 1 139 0 7146 196 23 27 chr4 77908425 77908895 -106379767 + L1M4 LINE L1 3860 4330 -1816 2272 117 0 13 chr4 77908895 77909204 -106379458 + AluSx SINE Alu 1 305 -7 7146 196 23 27 chr4 77909204 77909595 -106379067 + L1M4 LINE L1 4330 4721 -1425 1637 175 104 25 chr4 77909595 77909960 -106378702 - MSTD LTR MaLR 0 396 3 7146 196 23 27 chr4 77909960 77910447 -106378215 + L1M4 LINE L1 4721 5205 -941 234 0 0 0 chr4 77910467 77910493 -106378169 + (TA)n Simple_repeat Simple_repeat 2 27 0 2098 118 0 32 chr4 77912608 77912921 -106375741 - AluSx SINE Alu -9 303 1 1350 173 84 110 chr4 77912923 77913385 -106375277 - LTR7 LTR ERV1 0 450 1 1231 139 50 15 chr4 77913804 77914006 -106374656 + MER3 DNA MER1_type 1 209 0 1989 124 23 19 chr4 77914155 77914462 -106374200 + AluSg SINE Alu 1 308 -2 271 222 111 0 chr4 77915402 77915483 -106373179 - MER103 DNA DNA -35 131 42 648 155 0 101 chr4 77915505 77915653 -106373009 - FLAM_A SINE Alu 0 133 1 322 303 97 0 chr4 77915695 77915840 -106372822 - MER112 DNA MER1_type -7 253 95 1266 104 6 0 chr4 77915910 77916074 -106372588 + AluSx SINE Alu 3 167 -145 282 273 105 20 chr4 77916312 77916498 -106372164 - MIR SINE MIR 0 262 14 549 262 8 0 chr4 77918979 77919101 -106369561 + MER58B DNA MER1_type 168 290 -51 259 113 211 28 chr4 77919113 77919184 -106369478 + MER3 DNA MER1_type 105 188 -21 620 169 71 52 chr4 77919418 77919572 -106369090 + MER5B DNA MER1_type 1 157 -21 2620 154 21 16 chr4 77919906 77920334 -106368328 - MSTB1 LTR MaLR -2 430 1 211 360 58 0 chr4 77920494 77920580 -106368082 - L2 LINE L2 -213 3059 2969 643 230 83 14 chr4 77920745 77920962 -106367700 - L2 LINE L2 0 3313 3082 2083 89 40 13 chr4 77921367 77921669 -106366993 - AluY SINE Alu -1 310 1 1738 126 76 92 chr4 77921772 77922153 -106366509 - THE1C LTR MaLR 0 375 1 224 280 80 84 chr4 77922154 77922379 -106366283 + L2 LINE L2 1492 1715 -1599 254 191 0 0 chr4 77922381 77922428 -106366234 + L1ME4a LINE L1 5765 5811 -310 2485 116 26 15 chr4 77922555 77922944 -106365718 - L1MB2 LINE L1 -5 6166 5774 256 229 96 70 chr4 77923013 77923170 -106365492 + L1ME4a LINE L1 5933 6093 -28 235 337 153 36 chr4 77923223 77923615 -106365047 + L2 LINE L2 2814 3251 -21 28 29 0 0 chr4 77923751 77923786 -106364876 + AT_rich Low_complexity Low_complexity 1 35 0 7995 170 62 23 chr4 77923835 77924575 -106364087 - L1PA16 LINE L1 -9 6157 5447 2233 115 7 0 chr4 77924575 77924880 -106363782 - AluSx SINE Alu -5 307 1 7995 170 62 23 chr4 77924880 77925333 -106363329 - L1PA16 LINE L1 -719 5447 5013 2442 85 3 0 chr4 77925333 77925640 -106363022 - AluY SINE Alu -3 308 1 7995 170 62 23 chr4 77925640 77926244 -106362418 - L1PA16 LINE L1 -1153 5013 4434 2044 139 17 0 chr4 77926244 77926539 -106362123 - AluSx SINE Alu -12 300 1 7995 170 62 23 chr4 77926539 77927379 -106361283 - L1PA16 LINE L1 -1732 4434 3417 1895 153 10 0 chr4 77927401 77927689 -106360973 - AluJb SINE Alu -21 291 1 246 232 71 101 chr4 77928735 77928834 -106359828 + MIR SINE MIR 53 148 -114 253 362 71 8 chr4 77928839 77928966 -106359696 + L2 LINE L2 3136 3270 -2 551 217 281 5 chr4 77928998 77929201 -106359461 + MIR SINE MIR 2 260 -2 21 0 0 0 chr4 77930098 77930119 -106358543 + AT_rich Low_complexity Low_complexity 1 21 0 206 283 19 0 chr4 77930715 77930768 -106357894 + CT-rich Low_complexity Low_complexity 4 57 0 185 327 44 26 chr4 77930796 77930909 -106357753 - L2 LINE L2 -46 3226 3112 507 312 59 0 chr4 77931052 77931238 -106357424 - MIR SINE MIR -15 247 51 1744 92 13 0 chr4 77931249 77931488 -106357174 + L1MA8 LINE L1 6046 6287 -4 26 0 0 0 chr4 77931652 77931678 -106356984 + AT_rich Low_complexity Low_complexity 1 26 0 1746 121 93 17 chr4 77931772 77932062 -106356600 + AluJo SINE Alu 1 312 0 253 269 184 28 chr4 77932366 77932578 -106356084 + L2 LINE L2 2090 2334 -980 2807 96 81 5 chr4 77932728 77933124 -106355538 + MSTA LTR MaLR 1 426 -2 2480 72 3 0 chr4 77933232 77933538 -106355124 - AluY SINE Alu -4 307 1 271 274 20 10 chr4 77933606 77933708 -106354954 + CT-rich Low_complexity Low_complexity 2 104 0 201 94 0 0 chr4 77933708 77933740 -106354922 + (GA)n Simple_repeat Simple_repeat 2 33 0 278 291 60 122 chr4 77933781 77934231 -106354431 + L2 LINE L2 1545 1918 -1396 1863 161 7 3 chr4 77934231 77934523 -106354139 + AluJo SINE Alu 5 297 -15 278 291 60 122 chr4 77934523 77934934 -106353728 + L2 LINE L2 1918 2353 -961 1896 99 28 0 chr4 77934956 77935209 -106353453 + AluSg SINE Alu 36 295 -15 1034 176 16 16 chr4 77935375 77935562 -106353100 + MER5A DNA MER1_type 3 189 0 192 331 57 97 chr4 77935574 77935822 -106352840 + L2 LINE L2 2999 3236 -36 2356 167 52 109 chr4 77935998 77936694 -106351968 - MLT2F LTR ERVL -7 656 1 216 0 0 0 chr4 77936771 77936795 -106351867 + (A)n Simple_repeat Simple_repeat 1 24 0 650 314 0 0 chr4 77937147 77937322 -106351340 + MIR SINE MIR 56 230 -32 1909 163 0 0 chr4 77937618 77937919 -106350743 + AluJb SINE Alu 9 309 -3 432 331 86 56 chr4 77938886 77939224 -106349438 + L2 LINE L2 2924 3271 -1 1477 65 0 51 chr4 77939587 77939803 -106348859 - AluY SINE Alu -71 240 36 1806 118 4 15 chr4 77939833 77940096 -106348566 + AluSq SINE Alu 1 260 -53 3810 122 58 24 chr4 77940124 77940747 -106347915 + LTR9B LTR ERV1 1 644 0 2483 146 80 7 chr4 77940763 77941215 -106347447 + MER31A LTR ERV1 1 485 0 831 211 0 0 chr4 77941739 77941895 -106346767 - AluJb SINE Alu -20 292 137 1062 271 158 8 chr4 77942440 77942918 -106345744 - L2 LINE L2 0 3313 2737 1238 194 81 18 chr4 77942918 77943201 -106345461 - AluJo SINE Alu -1 301 1 1062 271 158 8 chr4 77943201 77943269 -106345393 - L2 LINE L2 -576 2737 2681 545 284 66 20 chr4 77943269 77943466 -106345196 - L2 LINE L2 -751 2563 2358 1474 137 45 101 chr4 77943843 77944086 -106344576 + MER44D DNA MER2_type 1 256 -2235 2145 115 0 6 chr4 77944086 77944398 -106344264 + AluSx SINE Alu 1 310 -2 1474 137 45 101 chr4 77944398 77944511 -106344151 + MER44D DNA MER2_type 256 607 -2 780 258 149 84 chr4 77945394 77945537 -106343125 - LTR16C LTR ERVL -12 479 347 1929 139 0 10 chr4 77945537 77945840 -106342822 + AluJb SINE Alu 13 312 0 780 258 149 84 chr4 77945840 77946146 -106342516 - LTR16C LTR ERVL -144 347 1 2073 48 0 0 chr4 77946511 77946759 -106341903 + L1PA5 LINE L1 5907 6154 0 1649 131 3 56 chr4 77947213 77947534 -106341128 + AluY SINE Alu 1 304 -7 398 285 104 0 chr4 77947704 77947848 -106340814 + L2 LINE L2 3114 3272 0 232 306 264 0 chr4 77948424 77948568 -106340094 - MIR3 SINE MIR -11 197 16 335 85 0 0 chr4 77949495 77949542 -106339120 + Alu SINE Alu 252 298 -4 803 226 126 22 chr4 77950744 77950974 -106337688 - MIR SINE MIR -1 261 8 608 195 161 49 chr4 77951105 77951310 -106337352 + MIR SINE MIR 34 261 -1 390 169 15 0 chr4 77951381 77951446 -106337216 - MER5A DNA MER1_type -122 67 2 537 169 19 130 chr4 77951572 77951726 -106336936 + MLT1B LTR MaLR 1 137 -253 1520 162 22 7 chr4 77951726 77951997 -106336665 - AluJo SINE Alu -33 279 5 734 236 108 0 chr4 77952362 77952574 -106336088 - MIR SINE MIR -14 248 14 482 258 25 0 chr4 77952594 77952714 -106335948 + MIR SINE MIR 49 171 -91 190 347 42 21 chr4 77952823 77952918 -106335744 - L2 LINE L2 -173 3099 3003 727 227 0 0 chr4 77953167 77953308 -106335354 + AluJb SINE Alu 153 293 -19 231 344 16 16 chr4 77953311 77953439 -106335223 - L2 LINE L2 -598 2716 2589 588 92 13 0 chr4 77953548 77953624 -106335038 - AluSp SINE Alu -123 190 114 2003 177 56 50 chr4 77953724 77954187 -106334475 + MER34B LTR ERV1 82 547 -18 345 113 65 8 chr4 77954187 77954311 -106334351 + (TA)n Simple_repeat Simple_repeat 1 131 0 1791 104 4 0 chr4 77954311 77954561 -106334101 - AluY SINE Alu -24 287 37 2303 78 7 0 chr4 77954575 77954884 -106333778 - AluY SINE Alu 0 311 1 1752 111 49 14 chr4 77956103 77956391 -106332271 - AluSx SINE Alu -14 298 1 2010 115 0 0 chr4 77956741 77957027 -106331635 - AluSc SINE Alu -23 286 1 32 0 0 0 chr4 77957363 77957395 -106331267 + AT_rich Low_complexity Low_complexity 1 32 0 313 315 178 0 chr4 77958126 77958272 -106330390 + MER5A DNA MER1_type 11 182 -7 294 230 103 11 chr4 77958293 77958380 -106330282 + MER5B DNA MER1_type 8 102 -76 183 241 81 46 chr4 77958475 77958562 -106330100 - MIR SINE MIR -144 118 29 366 254 92 74 chr4 77958864 77959230 -106329432 - L1M2 LINE L1 -2947 3901 1766 3557 159 38 5 chr4 77959383 77959991 -106328671 + MER6 DNA MER2_type 238 865 0 1689 156 3 7 chr4 77960045 77960327 -106328335 + AluJb SINE Alu 1 281 -31 183 42 0 0 chr4 77960332 77960356 -106328306 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2168 99 3 0 chr4 77960368 77960662 -106328000 + AluSq SINE Alu 1 295 -18 1756 158 7 14 chr4 77960711 77961008 -106327654 - AluJb SINE Alu -17 295 1 26 0 0 0 chr4 77961016 77961042 -106327620 + AT_rich Low_complexity Low_complexity 1 26 0 227 333 120 17 chr4 77961098 77961215 -106327447 - L1MC/D LINE L1 -2183 5625 5497 2068 82 3 17 chr4 77962181 77962472 -106326190 + AluSc SINE Alu 1 287 -22 201 296 49 25 chr4 77963278 77963359 -106325303 + L2 LINE L2 3184 3266 -47 574 191 63 8 chr4 77963660 77963786 -106324876 + FLAM_A SINE Alu 1 133 0 186 326 221 0 chr4 77963901 77963987 -106324675 + L2 LINE L2 3179 3283 -30 1301 146 14 5 chr4 77964521 77964741 -106323921 - AluSg/x SINE Alu -16 294 73 338 348 9 9 chr4 77964949 77965064 -106323598 + L2 LINE L2 3144 3258 -14 1380 241 60 3 chr4 77965540 77965892 -106322770 + L1MEc LINE L1 11 382 -6014 1275 201 44 15 chr4 77965937 77966211 -106322451 + L1MEc LINE L1 357 638 -5758 1353 108 0 0 chr4 77966214 77966399 -106322263 + AluSx SINE Alu 1 185 -127 2642 239 33 9 chr4 77966401 77967190 -106321472 + L1MEc LINE L1 666 1473 -4923 1384 167 174 27 chr4 77967200 77967278 -106321384 - MER2 DNA MER2_type -1 344 279 2055 121 0 10 chr4 77967278 77967576 -106321086 + AluSx SINE Alu 7 301 -11 1384 167 174 27 chr4 77967576 77967796 -106320866 - MER2 DNA MER2_type -66 279 2 2634 225 49 18 chr4 77967800 77968165 -106320497 + L1MEc LINE L1 1478 1830 -4566 1899 146 7 3 chr4 77968165 77968474 -106320188 + AluSq SINE Alu 1 310 -3 2634 225 49 18 chr4 77968474 77968881 -106319781 + L1MEc LINE L1 1830 2274 -4122 779 156 151 11 chr4 77968882 77969061 -106319601 + MER3 DNA MER1_type 1 204 -5 792 204 54 23 chr4 77969070 77969291 -106319371 + L1MEc LINE L1 2273 2500 -3896 1616 148 30 127 chr4 77969355 77969672 -106318990 - MLT1B LTR MaLR 0 390 124 2210 93 3 0 chr4 77969672 77969961 -106318701 - AluSx SINE Alu -22 290 1 1616 148 30 127 chr4 77969961 77970075 -106318587 - MLT1B LTR MaLR -266 124 1 404 247 11 0 chr4 77970480 77970573 -106318089 - AluJ/FLAM SINE Alu -207 95 2 1113 206 59 4 chr4 77971018 77971271 -106317391 - AluSx SINE Alu -19 293 27 1068 75 7 0 chr4 77971702 77971848 -106316814 - AluY SINE Alu -10 301 155 741 256 111 49 chr4 77972172 77972562 -106316100 - MLT1H LTR MaLR 0 549 69 1869 111 33 42 chr4 77972562 77972869 -106315793 + AluJb SINE Alu 1 304 -8 741 256 111 49 chr4 77972869 77972890 -106315772 - MLT1H LTR MaLR -480 69 51 224 390 0 0 chr4 77974373 77974473 -106314189 - MIR3 SINE MIR -3 205 106 1274 221 85 76 chr4 77975194 77975316 -106313346 + MLT1D LTR MaLR 1 120 -385 2236 84 7 0 chr4 77975316 77975612 -106313050 - AluSp SINE Alu -15 298 1 1274 221 85 76 chr4 77975612 77975936 -106312726 + MLT1D LTR MaLR 120 451 -54 384 270 48 8 chr4 77976075 77976201 -106312461 + MIR SINE MIR 28 158 -104 402 233 189 19 chr4 77976210 77976369 -106312293 - MER46C DNA MER2_type -10 328 143 379 223 53 21 chr4 77976471 77976565 -106312097 + MIR SINE MIR 156 252 -10 318 364 82 22 chr4 77976615 77976884 -106311778 + L2 LINE L2 2938 3222 -50 2186 100 3 7 chr4 77977577 77977886 -106310776 + AluSx SINE Alu 1 308 -4 1672 192 108 8 chr4 77977970 77978330 -106310332 + MSTD LTR MaLR 1 396 0 357 302 20 27 chr4 77979438 77979587 -106309075 + MER5A DNA MER1_type 20 167 -22 * 537 281 13 7 chr4 77979456 77979609 -106309053 - MER5A DNA MER1_type -25 164 11 239 212 106 30 chr4 77979785 77979851 -106308811 + L1MC5 LINE L1 7733 7803 -158 1768 148 35 0 chr4 77981363 77981653 -106307009 - AluJb SINE Alu -12 300 1 678 281 120 30 chr4 77982663 77983097 -106305565 - L1ME4a LINE L1 -12 6109 5637 2105 97 35 0 chr4 77983127 77983415 -106305247 - AluSx SINE Alu -14 298 1 705 222 222 6 chr4 77983442 77983622 -106305040 + MER20 DNA MER1_type 1 219 0 375 196 165 21 chr4 77984316 77984413 -106304249 - L2 LINE L2 0 3313 3203 321 253 44 70 chr4 77984501 77984659 -106304003 + MLT1H LTR MaLR 192 345 -204 251 261 41 30 chr4 77984686 77984789 -106303873 + MLT1H1 LTR MaLR 446 555 0 254 229 0 0 chr4 77984817 77984865 -106303797 - MLT1K LTR MaLR -395 193 146 469 314 49 5 chr4 77984963 77985148 -106303514 + L2 LINE L2 2342 2534 -780 378 367 28 17 chr4 77985175 77985355 -106303307 + L2 LINE L2 3001 3182 -90 329 315 47 16 chr4 77985629 77985756 -106302906 + MIR SINE MIR 79 209 -53 2060 103 3 20 chr4 77985970 77986270 -106302392 + AluSp SINE Alu 1 295 -18 330 307 121 16 chr4 77986364 77986424 -106302238 - MIR SINE MIR 0 262 210 1542 167 3 40 chr4 77986424 77986723 -106301939 + AluJo SINE Alu 3 290 -22 330 307 121 16 chr4 77986723 77986887 -106301775 - MIR SINE MIR -52 210 14 659 259 51 34 chr4 77987622 77987858 -106300804 - MIR SINE MIR 0 262 23 2493 53 3 10 chr4 77988644 77988944 -106299718 - AluY SINE Alu -13 298 1 1782 122 94 17 chr4 77989541 77989829 -106298833 + AluJo SINE Alu 1 310 -2 2546 64 0 0 chr4 77989982 77990277 -106298385 + AluY SINE Alu 1 295 -16 4866 174 29 35 chr4 77992180 77993954 -106294708 - L1MB2 LINE L1 -4 6167 4411 1041 165 125 22 chr4 77994001 77994273 -106294389 - MER33 DNA MER1_type -22 302 3 219 381 22 65 chr4 77994494 77994864 -106293798 - L2 LINE L2 -558 2756 2403 494 239 85 0 chr4 77994870 77995000 -106293662 + MIR SINE MIR 112 252 -10 710 127 36 9 chr4 77995161 77995271 -106293391 - FLAM_C SINE Alu -29 114 2 1711 169 18 0 chr4 77995300 77995579 -106293083 - AluJb SINE Alu -28 284 1 23 54 0 0 chr4 77996131 77996168 -106292494 + AT_rich Low_complexity Low_complexity 1 37 0 1104 74 80 6 chr4 77996957 77997120 -106291542 - L1PA11 LINE L1 0 6174 6000 312 242 8 73 chr4 77997124 77997248 -106291414 - MER112 DNA MER1_type -6 254 139 917 284 4 0 chr4 77997280 77997519 -106291143 + MIR SINE MIR 2 241 -21 1253 211 87 43 chr4 77998193 77998586 -106290076 + LTR1 LTR ERV1 1 410 -375 250 82 41 20 chr4 77998591 77998640 -106290022 + LTR1B LTR ERV1 777 826 0 585 230 119 49 chr4 77998659 77998885 -106289777 - MIR SINE MIR -16 246 5 * 596 272 109 20 chr4 77998883 77999085 -106289577 + MIR SINE MIR 25 244 -18 757 291 48 72 chr4 78000443 78000969 -106287693 - MER34 LTR ERV1 -29 513 1 228 282 14 0 chr4 78001330 78001401 -106287261 - LTR47A LTR ERVL -196 256 185 651 290 45 5 chr4 78001401 78001625 -106287037 + MIR SINE MIR 30 262 0 218 323 58 103 chr4 78002453 78002608 -106286054 + L2 LINE L2 3125 3272 0 1139 123 0 0 chr4 78002662 78002816 -106285846 - FRAM SINE Alu -25 151 1 211 304 11 22 chr4 78003470 78003562 -106285100 + GA-rich Low_complexity Low_complexity 2 92 0 180 111 0 0 chr4 78004409 78004436 -106284226 + (TGGGGG)n Simple_repeat Simple_repeat 2 28 0 2305 112 7 0 chr4 78004510 78004815 -106283847 + AluSx SINE Alu 1 307 -5 494 299 7 7 chr4 78005591 78005728 -106282934 + MIR SINE MIR 4 140 -122 2354 95 3 0 chr4 78005736 78006031 -106282631 + AluSx SINE Alu 1 296 -16 301 132 0 0 chr4 78006645 78006698 -106281964 - L1MB4 LINE L1 -2 6178 6126 1012 65 0 0 chr4 78006715 78006839 -106281823 - AluSg/x SINE Alu -24 288 165 2350 86 0 3 chr4 78007502 78007793 -106280869 - AluSc SINE Alu -19 290 1 328 319 11 54 chr4 78007814 78007999 -106280663 + MER5B DNA MER1_type 1 177 -1 498 161 215 13 chr4 78009197 78009346 -106279316 + MER5A DNA MER1_type 9 187 -2 889 242 115 79 chr4 78009711 78010061 -106278601 - MLT1L LTR MaLR -8 607 271 1933 144 10 13 chr4 78010061 78010359 -106278303 + AluSx SINE Alu 1 297 -15 889 242 115 79 chr4 78010359 78010460 -106278202 - MLT1L LTR MaLR -344 271 175 1648 156 7 111 chr4 78010460 78010693 -106277969 - MLT1A1 LTR MaLR -2 363 107 180 0 0 0 chr4 78010693 78010713 -106277949 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 1568 188 0 28 chr4 78010716 78011004 -106277658 - AluJo SINE Alu -32 280 1 1648 156 7 111 chr4 78011004 78011171 -106277491 - MLT1A1 LTR MaLR -260 105 1 889 242 115 79 chr4 78011171 78011197 -106277465 - MLT1L LTR MaLR -440 175 112 2201 102 27 3 chr4 78011939 78012233 -106276429 - AluSx SINE Alu -11 301 1 2742 165 52 31 chr4 78013049 78013602 -106275060 - MER34B LTR ERV1 0 565 1 282 272 94 56 chr4 78014569 78014749 -106273913 - MIR SINE MIR -56 206 20 304 217 43 0 chr4 78015527 78015596 -106273066 - MER5A DNA MER1_type -56 133 62 457 269 38 75 chr4 78015762 78015948 -106272714 + MER8 DNA MER2_type 1 179 -60 370 206 0 0 chr4 78015923 78015986 -106272676 + MER2 DNA MER2_type 282 344 -1 * 740 156 37 37 chr4 78016068 78016203 -106272459 + AluJo SINE Alu 2 136 -176 287 200 33 0 chr4 78016215 78016275 -106272387 + MIR SINE MIR 20 81 -181 2047 134 145 8 chr4 78016430 78016796 -106271866 + MSTA LTR MaLR 1 416 -12 273 115 64 90 chr4 78016760 78016838 -106271824 + LTR66 LTR ERVL 363 438 -172 * 2474 69 50 14 chr4 78018398 78018762 -106269900 + HERVH LTR ERV1 7337 7713 0 2114 114 78 55 chr4 78018762 78019200 -106269462 + LTR7 LTR ERV1 1 448 -2 784 182 28 0 chr4 78019950 78020093 -106268569 - L1MCa LINE L1 -5337 1089 943 3858 129 86 2 chr4 78020093 78020312 -106268350 - HSMAR2 DNA Mariner -1 1301 1102 1955 105 0 4 chr4 78020312 78020579 -106268083 - AluY SINE Alu -13 298 33 3858 129 86 2 chr4 78020579 78020986 -106267676 - HSMAR2 DNA Mariner -200 1102 622 1897 108 21 4 chr4 78020989 78021288 -106267374 - AluSq SINE Alu 0 304 1 252 225 38 25 chr4 78021431 78021511 -106267151 + MLT1L LTR MaLR 1 81 -534 1164 238 53 0 chr4 78021594 78021875 -106266787 - L1M4 LINE L1 -902 5244 4949 572 165 0 37 chr4 78021876 78021985 -106266677 - AluJb SINE Alu 0 312 208 331 192 14 14 chr4 78022788 78022861 -106265801 + MLT1D LTR MaLR 422 494 -11 2623 72 3 3 chr4 78022949 78023284 -106265378 - L1PA8A LINE L1 -87 6044 5710 848 231 29 0 chr4 78023530 78023703 -106264959 - MER45A DNA AcHobo 0 178 1 580 395 64 18 chr4 78024036 78024581 -106264081 - L2 LINE L2 -560 2754 2185 928 257 130 39 chr4 78024618 78025202 -106263460 + L1ME3 LINE L1 5263 5899 -263 229 119 24 0 chr4 78025224 78025266 -106263396 - MADE1 DNA Mariner -37 43 1 9093 154 14 9 chr4 78025675 78027171 -106261491 + Tigger7 DNA MER2_type 985 2487 0 287 239 0 42 chr4 78027171 78027242 -106261420 - L2 LINE L2 -18 3295 3228 24 0 0 0 chr4 78027380 78027404 -106261258 + AT_rich Low_complexity Low_complexity 1 24 0 337 294 70 28 chr4 78027516 78027659 -106261003 - MIR SINE MIR 0 262 114 303 243 184 15 chr4 78028604 78028740 -106259922 + MIR3 SINE MIR 37 195 -13 2072 110 36 0 chr4 78029032 78029313 -106259349 + AluSx SINE Alu 1 291 -21 337 83 0 33 chr4 78029336 78029396 -106259266 + (TCCCC)n Simple_repeat Simple_repeat 4 61 0 1855 149 7 3 chr4 78029396 78029684 -106258978 - AluJo SINE Alu -23 289 1 2143 25 0 0 chr4 78029750 78029995 -106258667 + L1PA3 LINE L1 5911 6155 0 470 262 106 77 chr4 78080172 78080595 -106208067 + L1MEd LINE L1 740 1149 -4980 1712 163 10 27 chr4 78080595 78080896 -106207766 + AluJo SINE Alu 1 296 -16 470 262 106 77 chr4 78080896 78080980 -106207682 + L1MEd LINE L1 1149 1229 -4900 1779 214 99 57 chr4 78080980 78081507 -106207155 + MLT1H LTR MaLR 1 549 0 470 262 106 77 chr4 78081507 78081580 -106207082 + L1MEd LINE L1 1229 1333 -4796 909 51 34 0 chr4 78081589 78081706 -106206956 + AluSc SINE Alu 1 121 -188 316 171 86 19 chr4 78081806 78081911 -106206751 - AluSq/x SINE Alu -190 112 1 1314 186 24 4 chr4 78082280 78082527 -106206135 - AluJo SINE Alu 0 312 61 1783 147 3 33 chr4 78083162 78083468 -106205194 + AluJo SINE Alu 1 297 -15 2293 115 0 10 chr4 78083533 78083846 -106204816 - AluSg SINE Alu 0 310 1 1820 156 10 7 chr4 78084136 78084425 -106204237 + AluJo SINE Alu 1 290 -22 443 133 0 0 chr4 78084450 78084510 -106204152 - U6 snRNA snRNA -6 101 42 2175 107 0 13 chr4 78084647 78084946 -106203716 + AluSx SINE Alu 1 295 -17 2822 126 53 9 chr4 78085010 78085464 -106203198 - Tigger2 DNA MER2_type 0 2718 2245 524 126 27 9 chr4 78085466 78085577 -106203085 + CT-rich Low_complexity Low_complexity 3 115 0 678 154 51 26 chr4 78085585 78085702 -106202960 - FLAM_A SINE Alu -17 125 6 1662 135 84 13 chr4 78085702 78086013 -106202649 - Tigger2 DNA MER2_type -479 2239 1907 242 390 0 0 chr4 78086071 78086153 -106202509 + T-rich Low_complexity Low_complexity 1 82 0 1374 260 102 16 chr4 78086880 78087380 -106201282 + L2 LINE L2 8 550 -2764 24 32 0 0 chr4 78087710 78087741 -106200921 + AT_rich Low_complexity Low_complexity 1 31 0 1657 110 110 8 chr4 78087756 78088020 -106200642 - AluSx SINE Alu -21 291 1 234 56 0 28 chr4 78088046 78088082 -106200580 - LTR7 LTR ERV1 -38 412 378 270 289 216 10 chr4 78088123 78088414 -106200248 + L1M4 LINE L1 3820 4170 -1976 942 113 8 0 chr4 78088418 78088542 -106200120 + AluSq/x SINE Alu 5 129 -184 2033 126 41 0 chr4 78088679 78088973 -106199689 - AluSx SINE Alu -6 306 1 2222 97 7 0 chr4 78089028 78089317 -106199345 + AluSc SINE Alu 17 307 -2 1687 109 0 8 chr4 78090095 78090333 -106198329 - AluSp SINE Alu -2 311 76 422 237 141 13 chr4 78090648 78090804 -106197858 - MER5B DNA MER1_type -1 177 2 860 239 11 0 chr4 78090911 78091087 -106197575 + MER5B DNA MER1_type 1 178 0 203 250 21 0 chr4 78091447 78091495 -106197167 + L2 LINE L2 3186 3234 -38 377 263 167 26 chr4 78092047 78092086 -106196576 + MER58C DNA MER1_type 38 70 -2350 2093 136 7 0 chr4 78092086 78092394 -106196268 - AluSx SINE Alu -2 310 1 377 263 167 26 chr4 78092394 78092510 -106196152 + MER58C DNA MER1_type 70 215 0 1648 236 87 23 chr4 78092523 78092881 -106195781 - L1M4 LINE L1 -3092 3054 2644 2250 101 0 7 chr4 78092881 78093178 -106195484 - AluSx SINE Alu -17 295 1 1648 236 87 23 chr4 78093178 78093395 -106195267 - L1M4 LINE L1 -3502 2644 2442 1613 172 0 31 chr4 78093487 78093778 -106194884 + AluJo SINE Alu 1 282 -30 225 22 0 67 chr4 78093792 78093837 -106194825 + (TTTAA)n Simple_repeat Simple_repeat 3 44 0 2174 110 0 16 chr4 78093968 78094277 -106194385 - AluSg SINE Alu -6 304 1 1923 86 108 0 chr4 78094342 78094611 -106194051 + AluSp SINE Alu 1 298 -15 2210 98 7 0 chr4 78094883 78095179 -106193483 - AluSg SINE Alu -12 298 1 850 55 0 9 chr4 78095192 78095302 -106193360 - AluSg/x SINE Alu -6 304 196 2703 135 70 0 chr4 78095984 78096384 -106192278 + MSTC LTR MaLR 1 428 0 21 0 0 0 chr4 78097281 78097302 -106191360 + AT_rich Low_complexity Low_complexity 1 21 0 2470 135 125 78 chr4 78097822 78098349 -106190313 - MLT2B3 LTR ERVL 0 554 3 439 237 256 0 chr4 78098387 78098543 -106190119 + MLT1J LTR MaLR 1 196 -315 2057 147 124 38 chr4 78098551 78098872 -106189790 + MSTA LTR MaLR 1 364 -64 2572 37 0 3 chr4 78098872 78099170 -106189492 - AluY SINE Alu -14 297 1 2057 147 124 38 chr4 78099170 78099242 -106189420 + MSTA LTR MaLR 364 428 0 2097 122 16 3 chr4 78099244 78099547 -106189115 - AluSx SINE Alu -5 307 1 796 273 180 17 chr4 78099626 78099981 -106188681 + L1MC4a LINE L1 5439 5869 -1939 2156 147 78 64 chr4 78099981 78100354 -106188308 - MSTC LTR MaLR 0 428 47 2383 81 3 0 chr4 78100354 78100652 -106188010 - AluSp SINE Alu -9 304 6 2156 147 78 64 chr4 78100652 78100700 -106187962 - MSTC LTR MaLR -381 47 1 796 273 180 17 chr4 78100700 78100750 -106187912 + L1MC4a LINE L1 5869 5910 -1898 24 0 0 0 chr4 78100763 78100787 -106187875 + AT_rich Low_complexity Low_complexity 1 24 0 277 289 7 99 chr4 78100845 78100902 -106187760 + MER94 DNA DNA 4 65 -69 2182 52 7 11 chr4 78100902 78101208 -106187454 - AluY SINE Alu 0 305 1 277 289 7 99 chr4 78101208 78101291 -106187371 + MER94 DNA DNA 65 132 -2 277 214 191 0 chr4 78101327 78101411 -106187251 + MER5C DNA MER1_type 225 324 0 1756 123 29 44 chr4 78102376 78102692 -106185970 + AluSx SINE Alu 1 311 -1 2229 110 7 7 chr4 78102708 78103018 -106185644 - AluSg SINE Alu 0 310 1 2446 75 0 3 chr4 78103031 78103336 -106185326 - AluSg SINE Alu -6 304 1 414 262 132 68 chr4 78103347 78103771 -106184891 - L1M4 LINE L1 -1938 4208 3758 2195 115 10 0 chr4 78103780 78104075 -106184587 - AluSx SINE Alu -14 298 1 809 150 0 0 chr4 78104110 78104230 -106184432 - FLAM_C SINE Alu -18 125 6 209 229 9 76 chr4 78105591 78105696 -106182966 + (CGGGG)n Simple_repeat Simple_repeat 2 99 0 292 28 0 0 chr4 78106918 78106954 -106181708 - MER4D LTR ERV1 -78 825 790 28 71 0 0 chr4 78106955 78107011 -106181651 + AT_rich Low_complexity Low_complexity 1 56 0 22 56 0 0 chr4 78107132 78107168 -106181494 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr4 78107472 78107502 -106181160 + AT_rich Low_complexity Low_complexity 1 30 0 1810 112 8 4 chr4 78108114 78108372 -106180290 - AluSq SINE Alu -1 312 54 1286 175 22 0 chr4 78108589 78108817 -106179845 + L1M3 LINE L1 5477 5709 -462 24 0 0 0 chr4 78110703 78110727 -106177935 + GC_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 78112442 78112463 -106176199 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 78112578 78112600 -106176062 + AT_rich Low_complexity Low_complexity 1 22 0 2211 71 0 68 chr4 78112824 78113146 -106175516 - AluY SINE Alu -11 300 1 1816 149 14 14 chr4 78113613 78113909 -106174753 - AluSx SINE Alu -16 296 1 193 327 53 44 chr4 78114030 78114143 -106174519 - MIR SINE MIR -75 133 20 2161 110 3 0 chr4 78114329 78114657 -106174005 - AluSq SINE Alu 0 313 1 4440 124 40 13 chr4 78114901 78115036 -106173626 - L1PA16 LINE L1 -3 6163 6033 2227 122 0 0 chr4 78115036 78115347 -106173315 - AluY SINE Alu 0 311 1 4440 124 40 13 chr4 78115347 78115862 -106172800 - L1PA16 LINE L1 -133 6033 5492 1886 131 44 10 chr4 78115862 78116159 -106172503 - AluSx SINE Alu -5 307 1 4440 124 40 13 chr4 78116159 78116190 -106172472 - L1PA16 LINE L1 -674 5492 5463 707 96 39 0 chr4 78116320 78116424 -106172238 + AluSq/x SINE Alu 2 109 -203 2269 109 0 3 chr4 78116525 78116819 -106171843 - AluSx SINE Alu -19 293 1 250 56 0 0 chr4 78117172 78117208 -106171454 - Alu SINE Alu -5 297 262 963 132 0 121 chr4 78117208 78117244 -106171418 - AluJb SINE Alu -152 160 121 1865 162 0 22 chr4 78117244 78117559 -106171103 - AluJb SINE Alu -4 308 1 963 132 0 121 chr4 78117559 78117704 -106170958 - AluJb SINE Alu -191 121 1 2120 141 0 6 chr4 78117889 78118202 -106170460 + AluJo SINE Alu 1 311 -1 25 31 0 0 chr4 78118338 78118370 -106170292 + AT_rich Low_complexity Low_complexity 1 32 0 2375 86 0 0 chr4 78118818 78119119 -106169543 + AluSx SINE Alu 1 301 -11 2233 69 14 4 chr4 78119151 78119455 -106169207 + AluSg SINE Alu 1 307 0 325 242 88 11 chr4 78119519 78119610 -106169052 - L2 LINE L2 -16 3297 3200 489 216 156 11 chr4 78120570 78120707 -106167955 + MIR SINE MIR 1 143 -65 315 137 0 0 chr4 78120785 78120836 -106167826 - L1P LINE L1 -814 5354 5304 2637 163 29 12 chr4 78120840 78121325 -106167337 + L1PA16 LINE L1 5390 5882 -284 187 344 108 21 chr4 78121493 78121586 -106167076 - MIR SINE MIR -87 121 21 1526 150 19 70 chr4 78121907 78122221 -106166441 + AluJb SINE Alu 1 298 -14 2372 81 7 3 chr4 78122373 78122681 -106165981 + AluY SINE Alu 1 309 -2 662 205 229 48 chr4 78122740 78122950 -106165712 - MIR SINE MIR -1 261 14 1987 112 0 30 chr4 78123261 78123284 -106165378 - AluSg SINE Alu -8 302 280 201 39 0 0 chr4 78123284 78123310 -106165352 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1987 112 0 30 chr4 78123310 78123581 -106165081 - AluSg SINE Alu -30 280 17 2018 155 49 60 chr4 78124741 78124800 -106163862 + L1MB2 LINE L1 5723 5781 -390 399 21 0 0 chr4 78124800 78124848 -106163814 + (TA)n Simple_repeat Simple_repeat 1 48 0 2018 155 49 60 chr4 78124848 78125239 -106163423 + L1MB2 LINE L1 5781 6168 -3 245 29 0 29 chr4 78125329 78125364 -106163298 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 297 169 0 0 chr4 78125367 78125426 -106163236 + GA-rich Low_complexity Low_complexity 2 60 0 2089 116 0 0 chr4 78125452 78125727 -106162935 + AluSx SINE Alu 1 275 -37 186 71 0 0 chr4 78125731 78125759 -106162903 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 541 127 45 55 chr4 78125781 78125891 -106162771 + L1MB3 LINE L1 6074 6182 -1 2190 113 0 3 chr4 78126896 78127196 -106161466 - AluSx SINE Alu -13 299 1 1543 184 10 7 chr4 78127480 78127768 -106160894 + AluJb SINE Alu 1 289 -23 23 0 0 0 chr4 78127781 78127804 -106160858 + AT_rich Low_complexity Low_complexity 1 23 0 1411 146 5 0 chr4 78127946 78128158 -106160504 - AluJb SINE Alu 0 312 100 311 179 18 0 chr4 78128158 78128214 -106160448 - AluS SINE Alu -243 57 1 2321 76 0 35 chr4 78128376 78128692 -106159970 - AluY SINE Alu -6 305 1 21 0 0 0 chr4 78128907 78128928 -106159734 + AT_rich Low_complexity Low_complexity 1 21 0 1096 150 0 22 chr4 78129814 78129994 -106158668 + AluSg/x SINE Alu 137 312 0 1278 192 41 12 chr4 78130197 78130442 -106158220 + AluJo SINE Alu 35 286 -26 252 86 0 0 chr4 78130566 78130601 -106158061 + (CA)n Simple_repeat Simple_repeat 2 36 0 501 119 174 64 chr4 78130656 78130765 -106157897 - MER6 DNA MER2_type 0 865 745 1238 117 0 0 chr4 78130765 78130928 -106157734 + AluSx SINE Alu 10 172 -140 1233 123 6 0 chr4 78130939 78131110 -106157552 + AluSg/x SINE Alu 120 291 -21 268 135 0 0 chr4 78131119 78131156 -106157506 - MER6 DNA MER2_type -116 749 713 1888 113 8 8 chr4 78131485 78131750 -106156912 - AluSx SINE Alu -47 265 1 1950 110 35 10 chr4 78131968 78132258 -106156404 - AluSx SINE Alu -15 297 1 2112 103 13 17 chr4 78132340 78132641 -106156021 + AluSg SINE Alu 1 300 -10 2348 94 0 0 chr4 78133278 78133576 -106155086 + AluSg SINE Alu 1 298 -12 197 250 0 21 chr4 78134241 78134289 -106154373 - L2 LINE L2 -6 3266 3220 319 309 0 0 chr4 78134713 78134797 -106153865 + L2 LINE L2 3215 3298 -15 21 0 0 0 chr4 78135337 78135358 -106153304 + AT_rich Low_complexity Low_complexity 1 21 0 2494 79 3 0 chr4 78135365 78135670 -106152992 - AluSp SINE Alu -7 306 1 1683 177 43 0 chr4 78136216 78136515 -106152147 + AluJb SINE Alu 1 312 0 1228 171 0 5 chr4 78136797 78137007 -106151655 - AluJb SINE Alu -17 295 87 2183 79 38 7 chr4 78137112 78137404 -106151258 - AluSq SINE Alu -12 301 1 2529 74 0 0 chr4 78137627 78137936 -106150726 + AluSc SINE Alu 1 309 0 269 260 96 39 chr4 78138628 78138732 -106149930 + MIR SINE MIR 63 172 -90 1420 87 6 0 chr4 78139439 78139622 -106149040 + AluSp SINE Alu 125 308 -5 2036 161 3 0 chr4 78139721 78140025 -106148637 + AluSx SINE Alu 1 305 -7 2313 96 0 0 chr4 78140597 78140890 -106147772 + AluY SINE Alu 1 293 -18 2438 75 20 0 chr4 78141540 78141845 -106146817 + AluY SINE Alu 1 311 0 2101 130 0 7 chr4 78142249 78142542 -106146120 + AluSx SINE Alu 1 291 -21 605 309 93 13 chr4 78142627 78142938 -106145724 - L1MC/D LINE L1 -2003 5805 5470 2186 127 3 0 chr4 78142961 78143268 -106145394 + AluJb SINE Alu 1 308 -4 828 112 7 28 chr4 78143386 78143529 -106145133 - AluSc SINE Alu 0 309 170 183 80 0 0 chr4 78143629 78143654 -106145008 + (A)n Simple_repeat Simple_repeat 1 25 0 184 247 318 0 chr4 78145291 78145376 -106143286 - MIR SINE MIR -64 144 33 3870 140 72 28 chr4 78145451 78146322 -106142340 - Tigger6b DNA MER2_type -575 1022 1 1557 206 0 3 chr4 78146498 78146785 -106141877 - AluJb SINE Alu -22 290 5 8190 110 39 2 chr4 78147129 78148383 -106140279 - HSMAR2 DNA Mariner 0 1302 2 1514 179 46 0 chr4 78148620 78148883 -106139779 + AluSx SINE Alu 1 275 -37 2184 117 3 0 chr4 78149563 78149854 -106138808 - AluSx SINE Alu -20 292 1 611 147 0 20 chr4 78149897 78149999 -106138663 + AluJb SINE Alu 86 185 -127 1321 175 0 18 chr4 78150874 78151091 -106137571 + AluJb SINE Alu 86 298 -14 180 270 0 63 chr4 78151105 78151168 -106137494 + MIR SINE MIR 204 262 0 2997 170 56 11 chr4 78152072 78152719 -106135943 + L1MB8 LINE L1 5503 6178 0 251 250 10 30 chr4 78154257 78154357 -106134305 + (CGCGG)n Simple_repeat Simple_repeat 2 99 0 21 57 0 0 chr4 78155045 78155080 -106133582 + AT_rich Low_complexity Low_complexity 1 35 0 254 279 163 0 chr4 78155239 78155368 -106133294 + MIR SINE MIR 111 260 -2 1244 160 180 0 chr4 78155442 78155698 -106132964 - AluJb SINE Alu 0 302 1 1191 243 55 3 chr4 78156229 78156554 -106132108 - L1MC1 LINE L1 -7 6326 5985 513 307 61 42 chr4 78156562 78156940 -106131722 - L1M4 LINE L1 -3417 2729 2345 299 291 31 43 chr4 78157440 78157698 -106130964 - HAL1b LINE L1 -415 933 679 377 293 35 9 chr4 78157803 78157919 -106130743 - MIR SINE MIR -121 141 23 793 272 43 30 chr4 78158077 78158312 -106130350 + MIR SINE MIR 4 241 -21 296 23 70 0 chr4 78159216 78159259 -106129403 + A-rich Low_complexity Low_complexity 5 50 0 502 287 65 28 chr4 78159301 78159548 -106129114 + MIR SINE MIR 5 260 -2 2282 46 42 7 chr4 78159604 78159912 -106128750 + AluY SINE Alu 1 311 0 2055 82 89 4 chr4 78159920 78160201 -106128461 + AluSx SINE Alu 1 305 -7 2234 99 0 16 chr4 78160237 78160551 -106128111 + AluSc SINE Alu 1 309 0 280 224 106 63 chr4 78160742 78160935 -106127727 + MIR SINE MIR 23 220 -42 203 139 93 0 chr4 78161006 78161049 -106127613 - L3 LINE CR1 0 1577 1531 200 301 24 36 chr4 78161255 78161338 -106127324 + MIR SINE MIR 3 84 -178 184 271 100 0 chr4 78161336 78161406 -106127256 - L2 LINE L2 0 3313 3237 * 802 252 194 19 chr4 78161753 78162217 -106126445 + MLT1H LTR MaLR 1 545 -4 357 236 55 131 chr4 78162499 78162698 -106125964 - MIR SINE MIR 0 262 79 637 66 0 184 chr4 78162917 78163053 -106125609 - FLAM_C SINE Alu -32 111 1 260 266 32 32 chr4 78163871 78163995 -106124667 - L1MC4a LINE L1 -1122 6686 6563 1868 158 3 23 chr4 78164260 78164563 -106124099 - AluJb SINE Alu -15 297 1 2501 73 7 0 chr4 78164591 78164893 -106123769 - AluSc SINE Alu -5 304 1 906 128 7 7 chr4 78165250 78165398 -106123264 - MSTC LTR MaLR -280 148 1 1406 186 12 12 chr4 78165404 78165651 -106123011 - AluJo SINE Alu -61 251 5 1902 151 0 3 chr4 78165710 78165995 -106122667 + AluJo SINE Alu 16 299 -13 1061 229 47 82 chr4 78165995 78166066 -106122596 + L1MCa LINE L1 899 971 -5455 1771 153 3 50 chr4 78166066 78166386 -106122276 + AluJo SINE Alu 1 305 -7 1061 229 47 82 chr4 78166386 78166433 -106122229 + L1MCa LINE L1 971 1018 -5408 2299 74 44 0 chr4 78166433 78166731 -106121931 + AluY SINE Alu 1 311 0 1061 229 47 82 chr4 78166731 78166957 -106121705 + L1MCa LINE L1 1018 1217 -5209 2183 171 55 22 chr4 78166957 78167335 -106121327 + MSTB1 LTR MaLR 1 396 -36 2447 84 0 0 chr4 78167335 78167631 -106121031 - AluY SINE Alu -15 296 1 2183 171 55 22 chr4 78167631 78167668 -106120994 + MSTB1 LTR MaLR 396 430 -2 1061 229 47 82 chr4 78167668 78167919 -106120743 + L1MCa LINE L1 1217 1475 -4951 819 204 0 36 chr4 78167919 78168086 -106120576 - AluJo/FRAM SINE Alu -18 294 134 2196 127 0 0 chr4 78168086 78168386 -106120276 - AluSq SINE Alu -13 300 1 232 220 102 76 chr4 78168386 78168504 -106120158 + L1MCa LINE L1 1464 1584 -4842 2220 90 20 59 chr4 78168705 78168756 -106119906 - THE1C LTR MaLR 0 375 324 5495 74 19 3 chr4 78168756 78169510 -106119152 - L1PA8 LINE L1 0 6172 5407 2220 90 20 59 chr4 78169510 78169848 -106118814 - THE1C LTR MaLR -51 324 1 428 174 134 81 chr4 78169994 78170143 -106118519 - MER58C DNA MER1_type -9 206 50 474 202 18 35 chr4 78170214 78170328 -106118334 - MER58C DNA MER1_type -103 112 1 1905 127 38 3 chr4 78170504 78170795 -106117867 - AluSq SINE Alu -12 301 1 2220 79 24 7 chr4 78171215 78171505 -106117157 + AluSc SINE Alu 1 295 -14 328 283 7 41 chr4 78171624 78171769 -106116893 + MLT1H LTR MaLR 47 186 -363 2063 138 3 10 chr4 78171805 78172110 -106116552 + AluSx SINE Alu 1 303 -9 315 186 21 52 chr4 78172249 78172346 -106116316 + MLT1H LTR MaLR 431 524 -25 380 213 12 0 chr4 78172920 78173000 -106115662 - MER46C DNA MER2_type -3 335 255 508 209 90 0 chr4 78173048 78173182 -106115480 - L1ME2 LINE L1 -2 6162 6017 2495 64 0 0 chr4 78173228 78173526 -106115136 - AluY SINE Alu -12 299 2 587 253 43 11 chr4 78173526 78173712 -106114950 - MER46C DNA MER2_type -146 192 1 214 324 0 42 chr4 78173875 78173946 -106114716 + L2 LINE L2 3193 3260 -12 2378 92 0 0 chr4 78173990 78174293 -106114369 - AluSq SINE Alu -10 303 1 232 169 108 15 chr4 78174397 78174431 -106114231 + MER33 DNA MER1_type 7 36 -2549 1862 157 0 24 chr4 78174431 78174725 -106113937 - AluJo SINE Alu -17 295 9 232 169 108 15 chr4 78174725 78174755 -106113907 + MER33 DNA MER1_type 36 77 -247 * 684 168 30 8 chr4 78174730 78174861 -106113801 - MER3 DNA MER1_type -29 180 47 1878 112 54 11 chr4 78175237 78175514 -106113148 - AluSx SINE Alu -23 289 1 233 140 20 0 chr4 78175579 78175629 -106113033 + AluSg/x SINE Alu 81 131 -169 718 184 9 7 chr4 78175656 78175876 -106112786 + AluJb SINE Alu 1 283 -29 871 117 0 17 chr4 78176067 78176187 -106112475 - FLAM_C SINE Alu -15 118 1 299 244 87 71 chr4 78177065 78177192 -106111470 + L2 LINE L2 3143 3271 -1 618 250 39 44 chr4 78177525 78177729 -106110933 + MLT1J2 LTR MaLR 9 211 -239 1617 195 91 96 chr4 78177801 78177944 -106110718 - Charlie2 DNA MER1_type -126 2736 2594 2028 132 3 25 chr4 78177944 78178263 -106110399 - AluSx SINE Alu 0 312 1 1617 195 91 96 chr4 78178263 78178485 -106110177 - Charlie2 DNA MER1_type -268 2594 2373 1484 206 30 20 chr4 78178485 78178786 -106109876 + AluJo SINE Alu 9 312 0 1617 195 91 96 chr4 78178786 78179351 -106109311 - Charlie2 DNA MER1_type -489 2373 1809 1262 176 125 8 chr4 78179432 78179688 -106108974 - AluJo SINE Alu -18 294 9 1417 158 9 5 chr4 78179701 78179923 -106108739 - AluJb SINE Alu -19 293 71 1900 156 3 3 chr4 78180038 78180327 -106108335 + AluJb SINE Alu 1 289 -23 2192 99 10 10 chr4 78180933 78181237 -106107425 + AluSx SINE Alu 1 304 -8 777 213 0 0 chr4 78181356 78181483 -106107179 - FLAM_A SINE Alu -6 127 1 22 35 0 0 chr4 78181670 78181699 -106106963 + AT_rich Low_complexity Low_complexity 1 29 0 2114 266 56 35 chr4 78181723 78183138 -106105524 + L1MCa LINE L1 872 2485 -4122 403 278 23 46 chr4 78183138 78183311 -106105351 - L1M4 LINE L1 -1825 4321 4153 2302 110 0 0 chr4 78183316 78183608 -106105054 - AluSg SINE Alu -18 292 1 502 245 34 97 chr4 78183798 78184067 -106104595 + L2 LINE L2 3061 3312 -1 315 284 185 37 chr4 78184452 78184614 -106104048 - L2 LINE L2 -578 2736 2551 2136 84 4 7 chr4 78184638 78184911 -106103751 + AluSq SINE Alu 24 295 -18 355 119 30 0 chr4 78184916 78184983 -106103679 + (TA)n Simple_repeat Simple_repeat 1 69 0 1909 148 24 0 chr4 78185167 78185458 -106103204 + AluSg SINE Alu 1 298 -12 422 99 0 44 chr4 78185476 78185567 -106103095 + (GAAA)n Simple_repeat Simple_repeat 1 87 0 3949 143 94 11 chr4 78185586 78186383 -106102279 + Tigger2 DNA MER2_type 25 887 -1831 2107 133 0 3 chr4 78186410 78186710 -106101952 + AluSx SINE Alu 12 310 -2 4250 131 43 15 chr4 78186710 78186794 -106101868 + Tigger2 DNA MER2_type 1078 1158 -1560 2067 151 0 3 chr4 78186794 78187098 -106101564 - AluJo SINE Alu -9 303 1 4250 131 43 15 chr4 78187098 78187729 -106100933 + Tigger2 DNA MER2_type 1158 1813 -905 1610 100 52 26 chr4 78187729 78187960 -106100702 - AluSx SINE Alu -13 299 63 2314 87 10 0 chr4 78188562 78188862 -106099800 - AluSx SINE Alu -9 303 1 792 198 170 43 chr4 78188991 78189399 -106099263 - MLT1F1 LTR MaLR -7 535 43 2295 82 13 3 chr4 78189399 78189702 -106098960 - AluSq SINE Alu -7 306 1 792 198 170 43 chr4 78189702 78189752 -106098910 - MLT1F1 LTR MaLR -499 43 1 29 0 0 0 chr4 78190409 78190438 -106098224 + AT_rich Low_complexity Low_complexity 1 29 0 599 225 167 22 chr4 78191084 78191306 -106097356 - MIR SINE MIR 0 262 9 23 0 0 0 chr4 78193283 78193306 -106095356 + AT_rich Low_complexity Low_complexity 1 23 0 230 326 11 34 chr4 78193700 78193789 -106094873 - MER5A DNA MER1_type -96 93 7 1923 133 3 26 chr4 78193934 78194236 -106094426 - AluSx SINE Alu -17 295 1 2148 116 0 7 chr4 78194252 78194545 -106094117 - AluSg SINE Alu -19 291 1 262 281 105 42 chr4 78194711 78195045 -106093617 - L1ME4a LINE L1 -89 6032 5678 743 138 0 46 chr4 78195165 78195317 -106093345 - L1MA4 LINE L1 -1 6299 6155 256 246 49 92 chr4 78195632 78195774 -106092888 - L1ME4a LINE L1 -13 6108 5973 24 85 0 0 chr4 78195856 78195915 -106092747 + AT_rich Low_complexity Low_complexity 1 59 0 26 50 0 0 chr4 78195988 78196028 -106092634 + AT_rich Low_complexity Low_complexity 1 40 0 2146 225 95 13 chr4 78196028 78196636 -106092026 - L2 LINE L2 -1237 2077 1420 2230 92 0 10 chr4 78196650 78196943 -106091719 + AluY SINE Alu 1 290 -21 616 196 18 9 chr4 78196943 78197055 -106091607 - FLAM_A SINE Alu -29 113 1 362 250 213 7 chr4 78197064 78197200 -106091462 - L2 LINE L2 -1882 1432 1269 22 35 0 0 chr4 78198788 78198817 -106089845 + AT_rich Low_complexity Low_complexity 1 29 0 4925 121 42 15 chr4 78198897 78199070 -106089592 - L1PA14 LINE L1 0 6172 6005 2135 121 0 23 chr4 78199070 78199377 -106089285 - AluSx SINE Alu -12 300 1 4925 121 42 15 chr4 78199377 78200475 -106088187 - L1PA14 LINE L1 -167 6005 4823 342 0 0 0 chr4 78200580 78200618 -106088044 + (TTTTG)n Simple_repeat Simple_repeat 1 38 0 2132 109 0 0 chr4 78200622 78200897 -106087765 - AluSx SINE Alu -37 275 1 30 0 0 0 chr4 78200962 78200992 -106087670 + AT_rich Low_complexity Low_complexity 1 30 0 1065 203 41 58 chr4 78200998 78201240 -106087422 + MER8 DNA MER2_type 1 238 -1 492 231 44 50 chr4 78201769 78201929 -106086733 + MIR3 SINE MIR 20 178 -30 2039 185 83 48 chr4 78205939 78206089 -106082573 + L1M4 LINE L1 4900 5043 -1141 2260 117 3 0 chr4 78206089 78206398 -106082264 - AluSg SINE Alu 0 310 1 2039 185 83 48 chr4 78206398 78206783 -106081879 + L1M4 LINE L1 5043 5413 -771 2263 81 7 3 chr4 78206783 78207078 -106081584 + AluSq SINE Alu 1 296 -17 681 193 0 37 chr4 78207086 78207221 -106081441 + FLAM_C SINE Alu 1 130 -3 2039 185 83 48 chr4 78207221 78207527 -106081135 + L1M4 LINE L1 5419 5797 -387 2264 224 189 22 chr4 78207527 78208060 -106080602 - L1MC/D LINE L1 -743 5403 4960 1861 129 40 7 chr4 78208060 78208362 -106080300 - AluSx SINE Alu 0 312 1 2264 224 189 22 chr4 78208362 78209263 -106079399 - L1MC/D LINE L1 -1186 4960 3900 244 153 0 129 chr4 78209275 78209328 -106079334 - L1MB7 LINE L1 -21 6163 6123 2176 107 7 0 chr4 78209328 78209626 -106079036 + AluSx SINE Alu 1 300 -12 244 153 0 129 chr4 78209626 78209657 -106079005 - L1MB7 LINE L1 -61 6123 6090 455 256 54 24 chr4 78209660 78209828 -106078834 - L1MC/D LINE L1 -2229 3917 3745 1587 158 65 14 chr4 78210557 78210836 -106077826 - AluJb SINE Alu -19 293 1 2334 76 0 7 chr4 78212207 78212508 -106076154 + AluY SINE Alu 1 299 -12 31 44 0 0 chr4 78212820 78212865 -106075797 + AT_rich Low_complexity Low_complexity 1 45 0 418 237 119 8 chr4 78213959 78214077 -106074585 + L2 LINE L2 3183 3313 0 30 45 0 0 chr4 78214594 78214638 -106074024 + AT_rich Low_complexity Low_complexity 1 44 0 29 0 0 0 chr4 78214663 78214692 -106073970 + AT_rich Low_complexity Low_complexity 1 29 0 2100 141 0 3 chr4 78214864 78215169 -106073493 + AluSx SINE Alu 1 304 -8 2260 86 7 3 chr4 78215247 78215539 -106073123 - AluSq SINE Alu -20 293 1 284 272 294 7 chr4 78215702 78215838 -106072824 - MIR SINE MIR -75 187 13 570 253 80 95 chr4 78217138 78217433 -106071229 - L1MC4a LINE L1 -1897 5911 5613 2586 43 0 7 chr4 78217433 78217736 -106070926 - AluY SINE Alu -10 301 1 570 253 80 95 chr4 78217736 78217878 -106070784 - L1MC4a LINE L1 -2195 5613 5481 2154 95 0 20 chr4 78217878 78218173 -106070489 + AluSp SINE Alu 2 290 -23 570 253 80 95 chr4 78218173 78218271 -106070391 - L1MC4a LINE L1 -2327 5481 5383 39 50 0 0 chr4 78218566 78218626 -106070036 + AT_rich Low_complexity Low_complexity 1 60 0 1842 106 28 35 chr4 78219468 78219781 -106068881 + AluSx SINE Alu 7 312 0 25 31 0 0 chr4 78220042 78220074 -106068588 + AT_rich Low_complexity Low_complexity 1 32 0 266 67 22 0 chr4 78220600 78220645 -106068017 + (TA)n Simple_repeat Simple_repeat 2 47 0 2250 81 3 0 chr4 78220645 78220928 -106067734 - AluSx SINE Alu -28 284 1 22 0 0 0 chr4 78221987 78222009 -106066653 + AT_rich Low_complexity Low_complexity 1 22 0 323 298 39 29 chr4 78222297 78222401 -106066261 + L2 LINE L2 3208 3312 -1 22 0 0 0 chr4 78222710 78222732 -106065930 + AT_rich Low_complexity Low_complexity 1 22 0 1738 167 20 3 chr4 78223192 78223485 -106065177 + AluJb SINE Alu 4 301 -11 267 198 219 0 chr4 78223524 78223620 -106065042 + L1MC4 LINE L1 7918 8034 -8 2050 117 0 39 chr4 78225732 78226041 -106062621 - AluSx SINE Alu -15 297 1 707 247 145 22 chr4 78226078 78226305 -106062357 + MIR SINE MIR 2 256 -6 234 0 0 0 chr4 78226490 78226516 -106062146 + (TA)n Simple_repeat Simple_repeat 2 27 0 658 126 0 18 chr4 78227658 78227769 -106060893 + L1MB7 LINE L1 6068 6176 -8 297 0 0 0 chr4 78228198 78228231 -106060431 + (CA)n Simple_repeat Simple_repeat 1 33 0 22 0 0 0 chr4 78228877 78228899 -106059763 + AT_rich Low_complexity Low_complexity 1 22 0 2373 100 0 7 chr4 78229200 78229509 -106059153 - AluSx SINE Alu -5 307 1 24 0 0 0 chr4 78230055 78230079 -106058583 + AT_rich Low_complexity Low_complexity 1 24 0 533 171 48 0 chr4 78230079 78230184 -106058478 - HY1 scRNA scRNA -2 110 1 2223 94 24 0 chr4 78230193 78230490 -106058172 - AluSx SINE Alu -5 307 4 2257 109 0 0 chr4 78230839 78231132 -106057530 - AluSx SINE Alu -19 293 1 763 109 0 0 chr4 78232260 78232361 -106056301 - AluSq/x SINE Alu -180 132 32 261 0 0 0 chr4 78232546 78232575 -106056087 + (TA)n Simple_repeat Simple_repeat 1 29 0 1616 143 71 4 chr4 78232575 78232733 -106055929 - AluJb SINE Alu -17 295 110 405 0 0 0 chr4 78232733 78232778 -106055884 + (TG)n Simple_repeat Simple_repeat 2 46 0 1616 143 71 4 chr4 78232778 78232885 -106055777 - AluJb SINE Alu -202 110 12 28 48 0 0 chr4 78232889 78232931 -106055731 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr4 78233109 78233137 -106055525 + AT_rich Low_complexity Low_complexity 1 28 0 237 330 60 0 chr4 78233583 78233683 -106054979 - MIR SINE MIR -1 261 156 4182 185 58 23 chr4 78233764 78234727 -106053935 - L1MA9 LINE L1 -38 6274 5273 1991 139 0 0 chr4 78234727 78235035 -106053627 - AluSx SINE Alu 0 308 1 4182 185 58 23 chr4 78235035 78235172 -106053490 - L1MA9 LINE L1 -1039 5273 5142 1879 142 30 10 chr4 78235173 78235476 -106053186 - AluSg SINE Alu -1 309 1 311 118 0 0 chr4 78235477 78235528 -106053134 - L1MD3 LINE L1 -157 7838 7788 * 523 227 141 10 chr4 78235497 78235695 -106052967 - L1MD2 LINE L1 -166 6193 5970 23 33 0 0 chr4 78236097 78236127 -106052535 + AT_rich Low_complexity Low_complexity 1 30 0 3824 197 33 15 chr4 78237099 78238323 -106050339 + L1MB3 LINE L1 4777 6020 -163 1310 165 17 61 chr4 78238323 78238620 -106050042 - AluJo SINE Alu -22 290 7 849 166 33 17 chr4 78238626 78238807 -106049855 + L1MB3 LINE L1 5999 6182 -1 804 196 0 0 chr4 78238818 78238951 -106049711 + FLAM_A SINE Alu 1 133 0 1611 175 35 7 chr4 78239004 78239290 -106049372 + AluJb SINE Alu 3 296 -16 21 36 0 0 chr4 78239704 78239732 -106048930 + AT_rich Low_complexity Low_complexity 1 28 0 1345 154 0 0 chr4 78239736 78239971 -106048691 - AluSg/x SINE Alu 0 316 82 1061 215 66 106 chr4 78240022 78240426 -106048236 + L1M4 LINE L1 4807 5226 -920 2030 118 29 0 chr4 78240426 78240706 -106047956 + AluSx SINE Alu 1 288 -24 486 0 0 0 chr4 78240706 78240760 -106047902 + (CATAA)n Simple_repeat Simple_repeat 2 55 0 1061 215 66 106 chr4 78240760 78240806 -106047856 + L1M4 LINE L1 5224 5240 -906 307 212 91 91 chr4 78240841 78240973 -106047689 + L1MC5 LINE L1 7517 7648 -313 755 146 0 0 chr4 78240974 78241084 -106047578 + FLAM_C SINE Alu 1 110 -33 259 244 193 30 chr4 78241880 78242015 -106046647 - MIR SINE MIR -105 157 1 354 304 167 6 chr4 78242178 78242346 -106046316 + L3 LINE CR1 1071 1265 -312 760 246 60 119 chr4 78242350 78242785 -106045877 + MLT1I LTR MaLR 1 409 0 458 295 144 40 chr4 78242785 78243063 -106045599 + L3 LINE CR1 1266 1572 -5 1246 154 0 20 chr4 78243218 78243439 -106045223 - AluJo SINE Alu 0 301 85 1929 89 114 4 chr4 78243866 78244137 -106044525 + AluSg1 SINE Alu 1 301 -8 2415 88 0 0 chr4 78245094 78245402 -106043260 + AluY SINE Alu 1 308 -3 560 152 36 0 chr4 78245498 78245610 -106043052 + L1MB3 LINE L1 5782 5897 -286 2249 102 0 0 chr4 78245620 78245905 -106042757 + AluSx SINE Alu 1 285 -27 975 129 0 0 chr4 78245905 78246045 -106042617 + AluSg/x SINE Alu 164 303 -9 1196 138 4 58 chr4 78246045 78246241 -106042421 + L1MB3 LINE L1 5950 6132 -51 1884 132 81 0 chr4 78246241 78246514 -106042148 + AluSx SINE Alu 1 295 -17 1196 138 4 58 chr4 78246514 78246557 -106042105 + L1MB3 LINE L1 6132 6176 -7 2357 80 0 40 chr4 78246594 78246920 -106041742 + AluSq SINE Alu 1 313 0 189 333 28 28 chr4 78247399 78247471 -106041191 - L2 LINE L2 -553 2761 2690 2347 76 0 0 chr4 78247593 78247881 -106040781 + AluSg SINE Alu 1 288 -22 276 271 82 0 chr4 78249029 78249114 -106039548 - L2 LINE L2 -2103 1211 1120 391 367 116 7 chr4 78249234 78249528 -106039134 - L2 LINE L2 -2192 1122 797 23 0 0 0 chr4 78249709 78249732 -106038930 + AT_rich Low_complexity Low_complexity 1 23 0 781 252 152 0 chr4 78249735 78249945 -106038717 + MIR SINE MIR 21 262 0 21 0 0 0 chr4 78250475 78250496 -106038166 + AT_rich Low_complexity Low_complexity 1 21 0 2315 87 10 13 chr4 78250961 78251271 -106037391 + AluSx SINE Alu 1 309 -3 505 191 0 0 chr4 78251272 78251356 -106037306 - FRAM SINE Alu -33 143 60 1584 161 36 11 chr4 78253055 78253353 -106035309 + AluJb SINE Alu 3 307 0 1828 157 6 16 chr4 78253522 78253835 -106034827 - AluJb SINE Alu -1 311 2 2329 85 0 16 chr4 78254312 78254617 -106034045 - AluSq SINE Alu -13 300 1 198 337 22 43 chr4 78254831 78254923 -106033739 - MIR SINE MIR -147 115 26 2256 95 0 0 chr4 78256861 78257145 -106031517 - AluSx SINE Alu -28 284 1 2306 104 3 3 chr4 78257413 78257720 -106030942 - AluSp SINE Alu -6 307 1 1975 110 0 7 chr4 78257758 78258030 -106030632 + AluSc SINE Alu 34 303 -6 640 214 214 0 chr4 78258111 78258284 -106030378 - MIR SINE MIR -6 256 47 2185 115 0 0 chr4 78258312 78258599 -106030063 + AluSx SINE Alu 1 287 -25 4158 115 49 102 chr4 78258733 78259584 -106029078 - L1PA10 LINE L1 -26 6142 5337 2337 189 10 79 chr4 78259577 78259687 -106028975 - L1ME2 LINE L1 -192 5972 5863 * 1526 235 20 75 chr4 78259687 78260292 -106028370 - L1MB4 LINE L1 -300 5880 5312 2376 88 0 0 chr4 78260292 78260588 -106028074 + AluY SINE Alu 1 296 -15 1526 235 20 75 chr4 78260588 78260637 -106028025 - L1MB4 LINE L1 -868 5312 5262 278 286 74 34 chr4 78260698 78260873 -106027789 - HERVL40 LTR ERVL -3919 1611 1430 1201 266 71 10 chr4 78260909 78261304 -106027358 - HERVL40 LTR ERVL -4170 1360 942 389 222 105 66 chr4 78261331 78261588 -106027074 - HERVL40 LTR ERVL -5263 267 1 2153 191 18 70 chr4 78261589 78261872 -106026790 - LTR40a LTR ERVL 0 519 223 2533 51 0 0 chr4 78261872 78262168 -106026494 - AluY SINE Alu -15 296 1 2153 191 18 70 chr4 78262168 78262400 -106026262 - LTR40a LTR ERVL -296 223 31 916 153 70 13 chr4 78262400 78262557 -106026105 + FRAM SINE Alu 1 166 0 2153 191 18 70 chr4 78262557 78262585 -106026077 - LTR40a LTR ERVL -488 31 3 3194 227 109 19 chr4 78262598 78263781 -106024881 - L1MB4 LINE L1 -1662 4484 3195 834 206 24 18 chr4 78263781 78263951 -106024711 + AluJo SINE Alu 1 171 -141 1083 160 38 61 chr4 78263994 78264132 -106024530 - AluJb SINE Alu -66 246 113 2532 66 3 0 chr4 78264132 78264435 -106024227 + AluY SINE Alu 1 304 -7 1083 160 38 61 chr4 78264435 78264508 -106024154 - AluJb SINE Alu -199 113 40 499 265 113 9 chr4 78364627 78364857 -105923805 + L1MA9 LINE L1 6020 6273 -39 30 0 0 0 chr4 78364878 78364908 -105923754 + AT_rich Low_complexity Low_complexity 1 30 0 2429 66 0 7 chr4 78365036 78365337 -105923325 - AluY SINE Alu -12 299 1 361 67 0 0 chr4 78365897 78365942 -105922720 - AluJb SINE Alu -257 45 1 2140 116 7 0 chr4 78365945 78366238 -105922424 - AluSx SINE Alu -17 295 1 300 317 156 6 chr4 78366282 78366462 -105922200 - MIR SINE MIR 0 262 56 2252 112 3 0 chr4 78366625 78366930 -105921732 + AluSq SINE Alu 1 306 -7 24 0 0 0 chr4 78369483 78369507 -105919155 + AT_rich Low_complexity Low_complexity 1 24 0 55 0 0 0 chr4 78369528 78369583 -105919079 + AT_rich Low_complexity Low_complexity 1 55 0 430 89 0 0 chr4 78369810 78369866 -105918796 - AluJ/FLAM SINE Alu -233 79 24 441 289 103 31 chr4 78369947 78370141 -105918521 + HAL1 LINE L1 1167 1374 -1133 470 254 0 155 chr4 78370153 78370366 -105918296 + MIR SINE MIR 28 207 -55 389 274 45 13 chr4 78370503 78370660 -105918002 + HAL1 LINE L1 1513 1674 -833 309 311 122 12 chr4 78371051 78371476 -105917186 + L1M4 LINE L1 2256 2727 -3419 25 31 0 0 chr4 78371838 78371870 -105916792 + AT_rich Low_complexity Low_complexity 1 32 0 407 163 35 6 chr4 78371875 78372047 -105916615 + (TA)n Simple_repeat Simple_repeat 1 177 0 28 0 0 0 chr4 78372048 78372076 -105916586 + AT_rich Low_complexity Low_complexity 1 28 0 669 140 18 0 chr4 78372076 78372240 -105916422 + (TA)n Simple_repeat Simple_repeat 1 167 0 1892 111 63 0 chr4 78372240 78372511 -105916151 - AluSg SINE Alu -17 293 6 2321 97 0 0 chr4 78372526 78372825 -105915837 - AluY SINE Alu -12 299 1 420 20 0 0 chr4 78372826 78372875 -105915787 + (TTTC)n Simple_repeat Simple_repeat 4 52 0 1076 107 0 0 chr4 78372875 78373024 -105915638 - AluSg/x SINE Alu 0 312 164 1627 158 65 11 chr4 78373643 78373922 -105914740 - AluJb SINE Alu -18 294 1 21 0 0 0 chr4 78374274 78374295 -105914367 + AT_rich Low_complexity Low_complexity 1 21 0 2209 101 14 0 chr4 78374306 78374602 -105914060 + AluSx SINE Alu 1 300 -12 21 36 0 0 chr4 78374654 78374682 -105913980 + AT_rich Low_complexity Low_complexity 1 28 0 648 116 0 0 chr4 78375235 78375321 -105913341 + AluSg/x SINE Alu 203 288 -21 595 229 8 8 chr4 78375329 78375460 -105913202 + FLAM_A SINE Alu 1 131 -2 2156 118 0 23 chr4 78375956 78376260 -105912402 - AluSq SINE Alu -16 297 1 39 38 0 0 chr4 78376567 78376620 -105912042 + AT_rich Low_complexity Low_complexity 1 53 0 843 144 0 0 chr4 78376620 78376738 -105911924 - AluJb SINE Alu -194 118 1 1939 204 30 28 chr4 78377118 78377549 -105911113 - MLT1C LTR MaLR 0 467 36 1133 128 34 25 chr4 78377642 78377846 -105910816 - AluJ SINE Alu -2 310 105 714 271 115 38 chr4 78377989 78378328 -105910334 + MLT1F1 LTR MaLR 186 550 -17 285 128 2 53 chr4 78378706 78378763 -105909899 + LTR41 LTR ERVL 721 795 0 1556 208 53 0 chr4 78378763 78379105 -105909557 + L1MC4 LINE L1 6892 7251 -791 280 309 0 32 chr4 78379198 78379292 -105909370 + MIR SINE MIR 119 209 -53 699 325 98 24 chr4 78379455 78379873 -105908789 + L3 LINE CR1 1102 1550 -27 2102 123 0 45 chr4 78379900 78380210 -105908452 - AluSx SINE Alu -16 296 1 787 150 0 8 chr4 78380457 78380584 -105908078 - AluJ SINE Alu -174 128 3 1687 139 95 11 chr4 78381062 78381336 -105907326 - AluJb SINE Alu -15 297 1 194 337 50 10 chr4 78381769 78381870 -105906792 + MIR SINE MIR 108 212 -50 22 0 0 0 chr4 78382198 78382220 -105906442 + AT_rich Low_complexity Low_complexity 1 22 0 2141 108 6 19 chr4 78382940 78383254 -105905408 - AluSg SINE Alu 0 310 1 1146 123 0 0 chr4 78383475 78383638 -105905024 + AluSg/x SINE Alu 142 304 -8 819 143 0 0 chr4 78384000 78384126 -105904536 - AluSq/x SINE Alu -187 126 1 384 279 72 103 chr4 78384164 78384219 -105904443 - HAL1 LINE L1 -1429 1078 1023 2025 132 3 3 chr4 78384219 78384514 -105904148 - AluSc SINE Alu -14 295 1 384 279 72 103 chr4 78384514 78384527 -105904135 - HAL1 LINE L1 -1484 1023 1011 2490 56 3 0 chr4 78384527 78384829 -105903833 - AluY SINE Alu -8 303 1 384 279 72 103 chr4 78384829 78385049 -105903613 - HAL1 LINE L1 -1496 1011 798 1675 180 39 7 chr4 78385142 78385308 -105903354 - AluJb SINE Alu -19 293 113 192 40 0 0 chr4 78385308 78385333 -105903329 + (TTG)n Simple_repeat Simple_repeat 3 27 0 1675 180 39 7 chr4 78385333 78385450 -105903212 - AluJb SINE Alu -199 113 1 304 190 17 0 chr4 78385450 78385508 -105903154 - MER116 DNA Mariner -16 64 6 300 247 22 0 chr4 78385517 78385606 -105903056 + Charlie7 DNA MER1_type 2522 2612 0 263 369 53 11 chr4 78385615 78385802 -105902860 + MIR SINE MIR 22 216 -46 22 80 0 0 chr4 78385854 78385904 -105902758 + AT_rich Low_complexity Low_complexity 1 50 0 25 31 0 0 chr4 78386164 78386196 -105902466 + AT_rich Low_complexity Low_complexity 1 32 0 28 48 0 0 chr4 78386372 78386414 -105902248 + AT_rich Low_complexity Low_complexity 1 42 0 38 51 0 0 chr4 78386643 78386702 -105901960 + AT_rich Low_complexity Low_complexity 1 59 0 846 150 0 0 chr4 78386757 78386884 -105901778 + FLAM_C SINE Alu 1 127 -6 209 213 64 0 chr4 78386898 78386945 -105901717 + L2 LINE L2 3263 3312 -1 802 171 8 0 chr4 78386951 78387080 -105901582 - FLAM_C SINE Alu -3 130 1 207 0 0 0 chr4 78387083 78387106 -105901556 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2089 128 3 13 chr4 78388586 78388891 -105899771 + AluSx SINE Alu 1 302 -10 28 48 0 0 chr4 78388910 78388952 -105899710 + AT_rich Low_complexity Low_complexity 1 42 0 600 196 45 45 chr4 78389236 78389369 -105899293 - FLAM_C SINE Alu 0 133 1 1190 194 9 0 chr4 78389455 78389671 -105898991 - AluSg/x SINE Alu -9 303 86 548 326 70 12 chr4 78389858 78390186 -105898476 - L1MC4a LINE L1 -1907 5901 5555 837 181 0 0 chr4 78390529 78390662 -105898000 - FLAM_C SINE Alu 0 133 1 2137 122 6 6 chr4 78391169 78391480 -105897182 + AluSx SINE Alu 1 311 -1 1594 161 41 14 chr4 78392714 78393006 -105895656 + AluJo SINE Alu 9 308 -4 1954 144 0 25 chr4 78393834 78394154 -105894508 + AluJo SINE Alu 1 312 0 785 219 53 0 chr4 78394222 78394391 -105894271 - MER5B DNA MER1_type 0 178 1 2207 124 3 0 chr4 78394432 78394738 -105893924 - AluSg SINE Alu -1 309 3 2099 115 7 3 chr4 78394740 78395036 -105893626 - AluSx SINE Alu -15 297 1 2178 212 62 12 chr4 78396150 78396654 -105892008 - MER119 DNA MER1_type -50 533 5 1985 140 30 3 chr4 78397140 78397440 -105891222 - AluJb SINE Alu -4 308 1 847 268 115 31 chr4 78398077 78398188 -105890474 - L1ME4a LINE L1 -171 5950 5850 2256 119 0 3 chr4 78398188 78398498 -105890164 - AluSx SINE Alu -3 309 1 847 268 115 31 chr4 78398498 78398778 -105889884 - L1ME4a LINE L1 -271 5850 5526 223 240 0 0 chr4 78398921 78398960 -105889702 + (TATATG)n Simple_repeat Simple_repeat 2 43 -8 2309 90 0 10 chr4 78398960 78399260 -105889402 - AluSx SINE Alu -15 297 1 223 240 0 0 chr4 78399260 78399270 -105889392 + (TATATG)n Simple_repeat Simple_repeat 42 51 0 1758 170 20 0 chr4 78399368 78399662 -105889000 - AluJo SINE Alu -12 300 1 636 258 149 54 chr4 78399664 78399924 -105888738 - L1MC/D LINE L1 -545 5576 5481 2188 119 0 3 chr4 78399924 78400226 -105888436 - AluSx SINE Alu -11 301 1 636 258 149 54 chr4 78400226 78400368 -105888294 - L1MC/D LINE L1 -640 5481 5354 28 0 0 0 chr4 78401992 78402020 -105886642 + AT_rich Low_complexity Low_complexity 1 28 0 217 265 0 59 chr4 78402093 78402161 -105886501 - L2 LINE L2 -3 3269 3206 477 235 211 15 chr4 78402399 78402603 -105886059 + MIR SINE MIR 3 246 -16 1906 147 3 3 chr4 78403131 78403423 -105885239 - AluJb SINE Alu -16 296 5 330 156 189 44 chr4 78403529 78403619 -105885043 - L1ME3A LINE L1 0 6170 6068 1315 159 14 0 chr4 78403688 78403902 -105884760 + AluJb SINE Alu 86 302 -10 3777 132 7 2 chr4 78404422 78404991 -105883671 - MER41B LTR ERV1 -63 572 1 190 378 151 22 chr4 78405055 78405240 -105883422 + L2 LINE L2 3044 3252 -20 670 221 100 123 chr4 78405527 78405655 -105883007 + MER34C LTR ERV1 40 169 -416 1756 113 256 12 chr4 78405655 78405999 -105882663 - MSTA LTR MaLR 0 428 1 10162 132 18 28 chr4 78405999 78407593 -105881069 - MSTA-int LTR MaLR 0 1580 3 1896 122 223 14 chr4 78407595 78407949 -105880713 - MSTA LTR MaLR 0 428 1 670 221 100 123 chr4 78407949 78408368 -105880294 + MER34C LTR ERV1 169 578 -7 763 268 70 24 chr4 78408479 78408766 -105879896 - LTR33A LTR ERVL -2 521 222 293 209 33 44 chr4 78408846 78408937 -105879725 - MER34 LTR ERV1 -4 538 449 237 242 11 63 chr4 78409293 78409388 -105879274 - MER34B LTR ERV1 -448 117 28 2573 118 91 5 chr4 78409388 78409796 -105878866 - MER65A LTR ERV1 -2 443 1 232 224 9 103 chr4 78409834 78409950 -105878712 - LTR33A LTR ERVL -418 105 1 819 185 14 7 chr4 78411526 78411672 -105876990 - FRAM SINE Alu -30 146 1 371 227 40 0 chr4 78411672 78411730 -105876932 + MER67A LTR ERV1 23 83 -460 1112 231 32 44 chr4 78411730 78412072 -105876590 + MER67B LTR ERV1 1 338 -323 1383 131 0 15 chr4 78412087 78412293 -105876369 - AluSq SINE Alu -107 206 4 349 224 158 91 chr4 78412296 78412461 -105876201 + MER67C LTR ERV1 222 397 -313 685 199 62 0 chr4 78412482 78412643 -105876019 + MER67A LTR ERV1 373 543 0 22 70 0 0 chr4 78413289 78413332 -105875330 + AT_rich Low_complexity Low_complexity 1 43 0 2145 103 13 7 chr4 78413389 78413691 -105874971 - AluSg SINE Alu -6 304 1 2152 189 60 44 chr4 78413851 78414348 -105874314 - MLT1D LTR MaLR 0 505 1 1875 165 0 3 chr4 78414452 78414755 -105873907 - AluJo SINE Alu -8 304 3 268 248 238 46 chr4 78415967 78416457 -105872205 - L1MEd LINE L1 -855 1635 956 2186 121 0 34 chr4 78416457 78416780 -105871882 - AluSx SINE Alu 0 312 1 268 248 238 46 chr4 78416780 78416804 -105871858 - L1MEd LINE L1 -1534 956 938 560 58 0 92 chr4 78417346 78417433 -105871229 + AluSp/q SINE Alu 229 307 -6 44281 45 3 0 chr4 78417853 78423986 -105864676 + L1PA4 LINE L1 2 6155 0 33 0 0 0 chr4 78424181 78424214 -105864448 + AT_rich Low_complexity Low_complexity 1 33 0 1140 182 0 10 chr4 78424250 78424448 -105864214 - AluJo SINE Alu -30 282 87 2088 119 0 3 chr4 78424939 78425232 -105863430 - AluSx SINE Alu -20 292 1 378 0 0 0 chr4 78425424 78425466 -105863196 + (TG)n Simple_repeat Simple_repeat 2 43 0 1437 132 166 11 chr4 78425613 78425878 -105862784 + AluJb SINE Alu 1 306 -6 1043 232 4 21 chr4 78426218 78426455 -105862207 + MIR SINE MIR 1 233 -29 180 279 49 16 chr4 78427373 78427434 -105861228 - L2 LINE L2 -1874 1440 1378 2080 126 0 3 chr4 78428204 78428497 -105860165 - AluSc SINE Alu -17 292 1 26 30 0 0 chr4 78428499 78428532 -105860130 + AT_rich Low_complexity Low_complexity 1 33 0 887 144 8 0 chr4 78428534 78428659 -105860003 - FLAM_C SINE Alu -7 126 1 180 0 0 0 chr4 78429017 78429037 -105859625 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2281 104 0 13 chr4 78429215 78429523 -105859139 + AluY SINE Alu 1 304 -7 1598 169 11 4 chr4 78429915 78430181 -105858481 + AluJo SINE Alu 1 268 -44 832 221 136 28 chr4 78430228 78430545 -105858117 + L1MC4a LINE L1 6186 6536 -1272 599 232 47 17 chr4 78430570 78430732 -105857930 + MLT1L LTR MaLR 1 212 -337 1832 159 7 29 chr4 78430820 78431128 -105857534 + AluJb SINE Alu 6 306 -6 1633 149 51 22 chr4 78431278 78431554 -105857108 + AluJb SINE Alu 3 286 -26 483 113 0 0 chr4 78431655 78431717 -105856945 - AluS SINE Alu -255 63 2 1408 162 4 9 chr4 78431755 78431984 -105856678 - AluJo SINE Alu -76 236 9 1989 153 3 0 chr4 78432661 78432961 -105855701 - AluSx SINE Alu 0 312 12 22 0 0 0 chr4 78433692 78433714 -105854948 + AT_rich Low_complexity Low_complexity 1 22 0 233 238 100 0 chr4 78434096 78434176 -105854486 + L1MC5 LINE L1 7824 7911 -50 771 272 149 15 chr4 78434208 78434476 -105854186 + MLT1L LTR MaLR 312 615 0 1596 93 70 0 chr4 78434532 78434747 -105853915 - MER30 DNA MER1_type 0 230 1 866 151 0 36 chr4 78434768 78434907 -105853755 + AluJo SINE Alu 3 136 -176 251 151 27 27 chr4 78434907 78434980 -105853682 + (TA)n Simple_repeat Simple_repeat 1 73 0 677 148 19 0 chr4 78435823 78435931 -105852731 + FLAM_C SINE Alu 2 111 -32 1912 143 42 0 chr4 78435973 78436259 -105852403 + AluSx SINE Alu 1 298 -14 962 169 0 69 chr4 78436374 78436421 -105852241 - AluJo SINE Alu -136 176 127 2096 77 0 7 chr4 78436421 78436693 -105851969 - AluSc SINE Alu -39 270 1 962 169 0 69 chr4 78436693 78436834 -105851828 - AluJo SINE Alu -185 127 1 40 21 0 0 chr4 78437098 78437145 -105851517 + AT_rich Low_complexity Low_complexity 1 47 0 1774 160 14 10 chr4 78437746 78438039 -105850623 + AluJo SINE Alu 1 294 -18 1046 120 0 7 chr4 78438357 78438507 -105850155 - AluSg/x SINE Alu -6 304 156 233 378 53 36 chr4 78438730 78439087 -105849575 - L2 LINE L2 -464 2850 2488 571 193 83 0 chr4 78439219 78439328 -105849334 + L2 LINE L2 3191 3308 -5 26 50 0 0 chr4 78439556 78439596 -105849066 + AT_rich Low_complexity Low_complexity 1 40 0 692 249 81 0 chr4 78439630 78439803 -105848859 - MIR SINE MIR -10 252 66 184 283 33 17 chr4 78439871 78439931 -105848731 - MIR SINE MIR -136 126 66 2228 100 3 0 chr4 78440297 78440588 -105848074 - AluSq SINE Alu -21 292 1 21 36 0 0 chr4 78440693 78440721 -105847941 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr4 78440760 78440791 -105847871 + AT_rich Low_complexity Low_complexity 1 31 0 1847 180 3 0 chr4 78441048 78441359 -105847303 + AluJb SINE Alu 1 312 0 1782 166 7 10 chr4 78441563 78441858 -105846804 + AluSx SINE Alu 5 298 -14 2241 109 0 0 chr4 78441910 78442204 -105846458 + AluSx SINE Alu 1 294 -18 2329 98 0 0 chr4 78442372 78442667 -105845995 + AluSx SINE Alu 3 297 -15 282 164 115 0 chr4 78443680 78443741 -105844921 + L1MC4a LINE L1 5318 5385 -779 265 156 0 0 chr4 78443751 78443796 -105844866 + L1MC4a LINE L1 5355 5399 -781 28 61 0 0 chr4 78443815 78443864 -105844798 + AT_rich Low_complexity Low_complexity 1 49 0 327 286 192 33 chr4 78443877 78444183 -105844479 + L1MC4a LINE L1 5485 5648 -473 288 0 0 0 chr4 78444205 78444237 -105844425 + (A)n Simple_repeat Simple_repeat 1 32 0 567 159 177 18 chr4 78444249 78444362 -105844300 + FLAM_C SINE Alu 3 133 0 29 78 0 0 chr4 78444442 78444506 -105844156 + AT_rich Low_complexity Low_complexity 1 64 0 1398 209 0 0 chr4 78444666 78444905 -105843757 + AluJb SINE Alu 1 239 -73 688 209 23 0 chr4 78444905 78445034 -105843628 - MER5A DNA MER1_type -57 132 1 190 128 90 0 chr4 78445233 78445279 -105843383 - MIR SINE MIR -112 150 103 191 274 40 89 chr4 78445307 78445363 -105843299 - L2 LINE L2 -24 3289 3232 2445 58 6 13 chr4 78445363 78445675 -105842987 + AluY SINE Alu 1 310 -1 191 274 40 89 chr4 78445675 78445742 -105842920 - L2 LINE L2 -81 3232 3172 1455 84 93 19 chr4 78446132 78446346 -105842316 - MER30 DNA MER1_type 0 230 1 197 333 135 19 chr4 78446672 78446828 -105841834 - L2 LINE L2 -1303 2011 1838 1512 127 4 0 chr4 78447987 78448215 -105840447 + AluSg/x SINE Alu 84 312 0 291 197 98 0 chr4 78448301 78448362 -105840300 - MIR SINE MIR -66 142 76 1753 111 13 104 chr4 78448393 78448709 -105839953 - AluJb SINE Alu -25 287 1 2455 94 3 0 chr4 78452846 78453154 -105835508 + AluSq SINE Alu 1 309 -4 1001 154 0 0 chr4 78453384 78453540 -105835122 + AluSg/x SINE Alu 138 293 -19 269 154 154 0 chr4 78454472 78454524 -105834138 + MER53 DNA DNA 2 61 -128 740 197 8 0 chr4 78454687 78454814 -105833848 - FLAM_C SINE Alu -13 130 3 2210 117 0 10 chr4 78455771 78456079 -105832583 + AluSx SINE Alu 1 305 -7 24 0 0 0 chr4 78456349 78456373 -105832289 + AT_rich Low_complexity Low_complexity 1 24 0 2210 122 0 3 chr4 78456527 78456831 -105831831 + AluSx SINE Alu 1 303 -9 2105 134 0 13 chr4 78457637 78457950 -105830712 + AluSx SINE Alu 1 309 -3 1731 176 3 3 chr4 78458129 78458418 -105830244 + AluJb SINE Alu 1 289 -23 1885 207 87 21 chr4 78458541 78458976 -105829686 + LTR16B LTR ERVL 1 464 0 883 194 110 73 chr4 78459013 78459163 -105829499 + MLT1I LTR MaLR 20 163 -246 2536 50 0 7 chr4 78459163 78459460 -105829202 - AluY SINE Alu -16 295 1 883 194 110 73 chr4 78459460 78459650 -105829012 + MLT1I LTR MaLR 163 382 -27 342 200 15 0 chr4 78459685 78459750 -105828912 + Tigger3(Golem) DNA MER2_type 15 80 -2949 492 182 81 20 chr4 78459875 78459974 -105828688 + Tigger3(Golem) DNA MER2_type 2924 3028 -1 360 236 118 7 chr4 78460501 78460645 -105828017 - MER104 DNA Tc2 -2 178 19 2337 102 3 10 chr4 78460645 78460958 -105827704 + AluSp SINE Alu 2 312 -1 1839 140 0 17 chr4 78461069 78461361 -105827301 - AluJb SINE Alu -3 309 23 23 33 0 0 chr4 78461361 78461391 -105827271 + AT_rich Low_complexity Low_complexity 1 30 0 819 130 0 0 chr4 78461845 78461968 -105826694 - FLAM_C SINE Alu -20 123 1 207 114 0 0 chr4 78463400 78463435 -105825227 + (TG)n Simple_repeat Simple_repeat 2 36 0 234 0 0 0 chr4 78463584 78463610 -105825052 + (CA)n Simple_repeat Simple_repeat 2 27 0 485 228 89 17 chr4 78463610 78463790 -105824872 - Zaphod DNA AcHobo -175 3856 3664 1422 203 114 58 chr4 78463790 78463880 -105824782 - LTR48B LTR ERV1 0 644 560 2071 98 0 37 chr4 78463880 78464177 -105824485 - AluSx SINE Alu -7 305 20 1422 203 114 58 chr4 78464177 78464515 -105824147 - LTR48B LTR ERV1 -84 560 192 809 240 86 45 chr4 78464517 78464809 -105823853 - MER39 LTR ERV1 -184 523 220 1676 175 45 50 chr4 78464901 78465224 -105823438 + MER21B-int LTR ERV1 3765 4087 -104 2539 68 0 0 chr4 78465224 78465533 -105823129 - AluY SINE Alu -2 309 1 1676 175 45 50 chr4 78465533 78465586 -105823076 + MER21B-int LTR ERV1 4087 4139 -52 327 260 135 10 chr4 78465689 78465785 -105822877 + MER21B LTR ERV1 13 120 -743 276 103 0 0 chr4 78465790 78465829 -105822833 - MSTA LTR MaLR 0 428 390 2154 132 3 0 chr4 78465829 78466133 -105822529 + AluSx SINE Alu 1 305 -7 824 200 0 35 chr4 78466137 78466270 -105822392 + AluJo SINE Alu 5 132 -180 2265 112 3 0 chr4 78466270 78466574 -105822088 + AluSg SINE Alu 1 305 -5 824 200 0 35 chr4 78466574 78466610 -105822052 + AluJo SINE Alu 132 168 -144 2090 104 14 7 chr4 78466611 78466900 -105821762 + AluSx SINE Alu 16 306 -6 1377 138 43 82 chr4 78466907 78467211 -105821451 + AluJo SINE Alu 1 292 -20 1246 233 109 30 chr4 78467623 78468053 -105820609 + LTR16B LTR ERVL 1 464 0 1902 161 0 13 chr4 78468234 78468545 -105820117 - AluJb SINE Alu 0 312 6 866 241 0 0 chr4 78469445 78469603 -105819059 + FRAM SINE Alu 2 159 -7 308 284 55 0 chr4 78469618 78469745 -105818917 - L1ME4a LINE L1 -61 6060 5927 195 42 0 0 chr4 78469754 78469778 -105818884 + (TTATA)n Simple_repeat Simple_repeat 4 27 0 1839 118 26 0 chr4 78469780 78470051 -105818611 - AluSx SINE Alu -19 293 16 26 64 0 0 chr4 78470085 78470132 -105818530 + AT_rich Low_complexity Low_complexity 1 47 0 1752 166 49 6 chr4 78470137 78470462 -105818200 + MER34C LTR ERV1 1 339 -246 660 163 0 102 chr4 78470465 78470612 -105818050 - FLAM_C SINE Alu 0 133 2 446 275 117 121 chr4 78470755 78471202 -105817460 - L2 LINE L2 -17 3255 2776 1522 206 31 3 chr4 78471204 78471495 -105817167 - AluJb SINE Alu -13 299 1 2255 119 0 3 chr4 78471522 78471833 -105816829 + AluSx SINE Alu 1 310 -2 2321 106 0 0 chr4 78471854 78472155 -105816507 + AluY SINE Alu 1 301 -10 242 79 26 0 chr4 78472174 78472212 -105816450 + Alu SINE Alu 11 49 -259 1033 98 8 0 chr4 78472312 78472445 -105816217 - AluSq/x SINE Alu -178 134 1 935 88 8 8 chr4 78472445 78472570 -105816092 - MER57B LTR ERV1 -308 126 2 1280 184 0 0 chr4 78472793 78472999 -105815663 - ERVL-C2 LTR ERVL -3526 2238 2033 1030 241 65 54 chr4 78473004 78473083 -105815579 - ERVL-C2 LTR ERVL -4633 1060 983 2249 88 10 0 chr4 78473083 78473378 -105815284 + AluSx SINE Alu 1 298 -14 1030 241 65 54 chr4 78473378 78473967 -105814695 - ERVL-C2 LTR ERVL -4710 983 286 2183 121 3 3 chr4 78474212 78474519 -105814143 - AluSx SINE Alu -5 307 1 1165 74 0 0 chr4 78474519 78474654 -105814008 - AluSq/x SINE Alu -178 135 1 353 235 52 98 chr4 78474656 78474809 -105813853 - MLT2C2 LTR ERVL -2 462 250 285 165 55 138 chr4 78474821 78474930 -105813732 - MLT2C1 LTR ERVL -285 112 13 489 212 0 110 chr4 78474950 78475037 -105813625 - Charlie1 DNA MER1_type -393 130 64 1514 210 14 3 chr4 78475037 78475327 -105813335 - AluJo SINE Alu -19 293 1 489 212 0 110 chr4 78475327 78475385 -105813277 - Charlie1 DNA MER1_type -459 64 1 443 224 0 0 chr4 78475770 78475846 -105812816 - LTR8 LTR ERV1 -2 689 614 1558 117 0 0 chr4 78475851 78476057 -105812605 + AluSq SINE Alu 1 206 -107 874 139 10 92 chr4 78476069 78476267 -105812395 - LTR8A LTR ERV1 -523 168 1 1864 153 45 83 chr4 78476417 78476815 -105811847 - MER57A LTR ERV1 -9 394 12 189 107 0 0 chr4 78476815 78476843 -105811819 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1830 111 0 0 chr4 78476851 78477095 -105811567 - AluSx SINE Alu -40 272 29 1160 188 13 26 chr4 78477446 78477675 -105810987 + AluJo SINE Alu 1 226 -86 3541 151 60 44 chr4 78477692 78478375 -105810287 + LTR8A LTR ERV1 34 727 0 423 186 0 0 chr4 78478375 78478445 -105810217 + AluJo SINE Alu 223 292 -20 2083 114 0 0 chr4 78478446 78478719 -105809943 + AluSx SINE Alu 1 273 -39 1956 98 8 11 chr4 78479222 78479513 -105809149 + AluSx SINE Alu 21 310 0 1316 229 41 46 chr4 78479538 78479656 -105809006 + LTR37B LTR ERV1 3 120 -348 955 213 132 0 chr4 78479656 78479853 -105808809 - MER58A DNA MER1_type 0 224 2 1316 229 41 46 chr4 78479853 78480145 -105808517 + LTR37B LTR ERV1 120 411 -57 244 140 73 7 chr4 78480329 78480465 -105808197 + (TA)n Simple_repeat Simple_repeat 2 146 0 402 114 34 68 chr4 78480483 78480659 -105808003 + (TTATA)n Simple_repeat Simple_repeat 5 174 0 240 120 56 48 chr4 78480670 78480795 -105807867 + (TTATA)n Simple_repeat Simple_repeat 4 129 0 22 0 0 0 chr4 78480796 78480818 -105807844 + AT_rich Low_complexity Low_complexity 1 22 0 445 267 0 40 chr4 78481027 78481177 -105807485 - L1ME LINE L1 -456 5665 5522 421 348 20 15 chr4 78481816 78482017 -105806645 + MIR3 SINE MIR 3 204 -4 680 160 95 169 chr4 78484011 78484092 -105804570 + MER20 DNA MER1_type 3 88 -131 2183 127 0 0 chr4 78484092 78484391 -105804271 + AluSx SINE Alu 1 299 -13 680 160 95 169 chr4 78484391 78484540 -105804122 + MER20 DNA MER1_type 88 216 -3 201 154 0 0 chr4 78485450 78485489 -105803173 + T-rich Low_complexity Low_complexity 1 39 0 1753 152 20 3 chr4 78485574 78485871 -105802791 - L1MB4 LINE L1 -6 6174 5873 192 371 14 0 chr4 78485872 78485942 -105802720 + L2 LINE L2 3201 3271 -1 21 0 0 0 chr4 78485995 78486016 -105802646 + AT_rich Low_complexity Low_complexity 1 21 0 273 369 0 19 chr4 78486319 78486422 -105802240 - MIR SINE MIR -74 134 34 1103 76 0 0 chr4 78487723 78487868 -105800794 - AluY SINE Alu -8 303 159 1972 111 7 0 chr4 78488031 78488302 -105800360 + AluSx SINE Alu 1 273 -39 969 144 14 0 chr4 78488361 78488507 -105800155 - AluSg/x SINE Alu -18 294 147 203 339 32 0 chr4 78488717 78488779 -105799883 + L2 LINE L2 3208 3271 -42 315 229 68 42 chr4 78488798 78488916 -105799746 + L1ME4a LINE L1 6001 6121 0 189 273 70 117 chr4 78489128 78489428 -105799234 - L2 LINE L2 -2 3311 3026 953 189 20 20 chr4 78489715 78489916 -105798746 + L2 LINE L2 3113 3313 0 1108 269 158 61 chr4 78490247 78490872 -105797790 + MER21B LTR ERV1 29 714 -149 248 197 169 0 chr4 78490891 78490962 -105797700 + MIR SINE MIR 119 201 -61 280 292 41 42 chr4 78491056 78491190 -105797472 + MIR SINE MIR 63 191 -63 2222 116 0 0 chr4 78491665 78491959 -105796703 + AluSg SINE Alu 1 294 -16 184 167 28 0 chr4 78491959 78491995 -105796667 - MIR SINE MIR -153 109 73 424 328 73 20 chr4 78492024 78492228 -105796434 - MIR SINE MIR 0 262 48 315 237 68 34 chr4 78492263 78492381 -105796281 + MIR SINE MIR 135 256 -6 212 238 71 83 chr4 78492807 78492860 -105795802 + L2 LINE L2 3190 3243 -29 3233 86 32 7 chr4 78492860 78493293 -105795369 - MLT2A1 LTR ERVL 0 444 1 212 238 71 83 chr4 78493293 78493323 -105795339 + L2 LINE L2 3243 3272 0 349 242 33 25 chr4 78493743 78493863 -105794799 + HAL1b LINE L1 1213 1333 -15 1025 243 72 64 chr4 78493995 78494251 -105794411 - MER34C LTR ERV1 -38 551 299 2231 132 0 0 chr4 78494251 78494561 -105794101 - AluSx SINE Alu -2 310 1 1025 243 72 64 chr4 78494561 78494906 -105793756 - MER34C LTR ERV1 -290 299 1 2110 127 17 0 chr4 78495020 78495319 -105793343 + AluSx SINE Alu 9 312 0 2332 122 8 19 chr4 78495528 78495865 -105792797 - MER39 LTR ERV1 -10 697 363 4257 88 24 6 chr4 78495865 78496409 -105792253 - MER41A LTR ERV1 0 554 1 2332 122 8 19 chr4 78496409 78496433 -105792229 - MER39 LTR ERV1 -344 363 340 979 181 92 26 chr4 78496439 78496610 -105792052 - MER39 LTR ERV1 -425 282 91 2266 123 0 0 chr4 78496610 78496920 -105791742 + AluSq SINE Alu 1 310 -3 979 181 92 26 chr4 78496920 78496975 -105791687 - MER39 LTR ERV1 -616 91 41 1786 166 14 0 chr4 78496976 78497265 -105791397 + AluJo SINE Alu 1 293 -19 2033 126 9 31 chr4 78497268 78497626 -105791036 + AluSx SINE Alu 1 351 0 660 132 0 0 chr4 78497647 78497753 -105790909 + (GAAA)n Simple_repeat Simple_repeat 3 108 0 2088 136 3 0 chr4 78497782 78498083 -105790579 + AluSx SINE Alu 1 302 -10 252 91 159 0 chr4 78498087 78498131 -105790531 - MER39 LTR ERV1 -653 54 4 325 98 0 33 chr4 78498165 78498226 -105790436 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 204 283 0 0 chr4 78498663 78498709 -105789953 + (CA)n Simple_repeat Simple_repeat 1 46 0 1780 161 45 7 chr4 78498876 78499167 -105789495 - AluJb SINE Alu -10 302 1 2178 82 47 0 chr4 78499643 78499922 -105788740 - AluSg SINE Alu -18 292 1 182 143 0 0 chr4 78500219 78500247 -105788415 + MER5A DNA MER1_type 1 28 -161 1685 97 0 0 chr4 78500454 78500670 -105787992 + AluSg/x SINE Alu 86 301 -11 703 218 70 32 chr4 78500672 78500828 -105787834 - AluJo SINE Alu -24 288 127 533 202 0 0 chr4 78501113 78501202 -105787460 + MLT2B3 LTR ERVL 16 104 -450 12102 142 15 19 chr4 78501205 78501803 -105786859 + ERVL-B3 LTR ERVL 3868 4466 -1298 2247 120 0 0 chr4 78501803 78502103 -105786559 + AluSq SINE Alu 1 300 -13 12102 142 15 19 chr4 78502103 78503062 -105785600 + ERVL-B3 LTR ERVL 4466 5420 -344 1957 162 0 13 chr4 78503062 78503371 -105785291 + AluJo SINE Alu 6 310 -2 12102 142 15 19 chr4 78503371 78503707 -105784955 + ERVL-B3 LTR ERVL 5420 5756 -8 2011 119 10 17 chr4 78503707 78504009 -105784653 - AluSx SINE Alu -12 300 1 2708 177 79 19 chr4 78504022 78504543 -105784119 + MLT2B3 LTR ERVL 3 554 0 2081 141 7 0 chr4 78504574 78504878 -105783784 - AluSx SINE Alu -4 308 3 2414 94 0 0 chr4 78504897 78505204 -105783458 - AluSc SINE Alu -2 307 1 1852 117 37 60 chr4 78505479 78505779 -105782883 - AluSq SINE Alu -20 293 1 23 0 0 0 chr4 78506429 78506452 -105782210 + AT_rich Low_complexity Low_complexity 1 23 0 1282 144 4 48 chr4 78506919 78507108 -105781554 - AluJo SINE Alu -7 305 123 1933 123 7 42 chr4 78507108 78507253 -105781409 + AluSx SINE Alu 1 150 -176 2231 114 3 3 chr4 78507253 78507560 -105781102 + AluSq SINE Alu 1 307 -6 1933 123 7 42 chr4 78507560 78507751 -105780911 + AluSx SINE Alu 150 326 0 1282 144 4 48 chr4 78507751 78507787 -105780875 - AluJo SINE Alu -189 123 87 906 126 0 0 chr4 78508292 78508419 -105780243 + MER48 LTR ERV1 261 387 0 3219 128 2 11 chr4 78508419 78508897 -105779765 + HERVH48 LTR ERV1 1 474 -6180 23750 100 24 9 chr4 78508897 78512383 -105776279 + HERVH48 LTR ERV1 586 4122 -2532 7545 77 1 14 chr4 78512359 78513370 -105775292 + HERVH48 LTR ERV1 4670 5667 -987 * 1386 98 0 0 chr4 78513357 78513540 -105775122 + HERVH48 LTR ERV1 6472 6654 0 * 2310 104 32 0 chr4 78513540 78513856 -105774806 + MER48 LTR ERV1 1 326 -61 2143 175 112 10 chr4 78513873 78514291 -105774371 + LOR1b LTR ERV1 1 461 0 1014 175 40 45 chr4 78514769 78514969 -105773693 + AluJb SINE Alu 87 285 -27 910 200 0 30 chr4 78515000 78515165 -105773497 + FRAM SINE Alu 1 160 -6 2008 118 49 20 chr4 78515474 78515778 -105772884 + AluSq SINE Alu 1 313 0 2037 141 7 0 chr4 78516570 78517020 -105771642 + AluSx SINE Alu 1 452 0 2098 119 3 13 chr4 78517403 78517715 -105770947 + AluSg SINE Alu 1 309 -1 2104 100 3 3 chr4 78517715 78518000 -105770662 - L1PA13 LINE L1 -13 6150 5866 1568 218 107 21 chr4 78518006 78518653 -105770009 + MER50 LTR ERV1 10 734 0 359 104 0 0 chr4 78518653 78518701 -105769961 - L1PA13 LINE L1 -294 5869 5822 * 495 78 0 0 chr4 78518696 78518760 -105769902 + L1PA13 LINE L1 5748 5811 -350 915 172 32 38 chr4 78518914 78519100 -105769562 + AluJo SINE Alu 1 185 -127 2029 135 0 6 chr4 78519113 78519424 -105769238 + AluSx SINE Alu 1 309 -3 1821 163 10 0 chr4 78519439 78519733 -105768929 + AluSx SINE Alu 3 299 -13 986 277 139 38 chr4 78519750 78520245 -105768417 - MLT1H LTR MaLR -4 545 1 540 131 19 9 chr4 78520372 78520479 -105768183 + CT-rich Low_complexity Low_complexity 1 108 0 750 232 11 40 chr4 78520487 78520664 -105767998 - FRAM SINE Alu -9 167 1 551 170 1 0 chr4 78521340 78521434 -105767228 - MLT1B LTR MaLR -31 595 266 1152 188 0 28 chr4 78521440 78521695 -105766967 + L1 LINE L1 5096 5343 -803 * 2080 95 42 87 chr4 78521689 78521948 -105766714 + L1MA5A LINE L1 5891 6160 -137 249 57 0 0 chr4 78521948 78521983 -105766679 + (TG)n Simple_repeat Simple_repeat 2 36 0 2093 127 0 0 chr4 78521983 78522267 -105766395 - AluSx SINE Alu -27 285 2 2080 95 42 87 chr4 78522267 78522279 -105766383 + L1MA5A LINE L1 6159 6170 -127 4191 113 36 0 chr4 78522279 78522835 -105765827 + LTR19B LTR ERV1 5 580 0 2080 95 42 87 chr4 78522835 78522941 -105765721 + L1MA5A LINE L1 6170 6253 -44 2191 91 3 14 chr4 78522942 78523239 -105765423 + AluY SINE Alu 1 294 -17 2191 105 0 20 chr4 78523392 78523688 -105764974 - AluSx SINE Alu -22 290 1 334 298 25 140 chr4 78523750 78524029 -105764633 - L2 LINE L2 0 3272 3026 1013 71 0 0 chr4 78524545 78524694 -105763968 + L1PA10 LINE L1 6026 6174 0 230 107 0 161 chr4 78524840 78524896 -105763766 - LTR33A LTR ERVL -337 186 140 484 141 13 0 chr4 78526434 78526512 -105762150 - MER116 DNA Mariner -1 79 1 251 286 12 36 chr4 78526648 78526732 -105761930 + L2 LINE L2 3186 3267 -5 205 135 39 0 chr4 78526757 78526809 -105761853 + (TA)n Simple_repeat Simple_repeat 1 54 0 237 312 0 0 chr4 78527217 78527294 -105761368 + (TGGA)n Simple_repeat Simple_repeat 3 79 0 225 0 0 0 chr4 78527398 78527423 -105761239 + (TAA)n Simple_repeat Simple_repeat 1 25 0 2823 185 20 67 chr4 78528146 78528788 -105759874 - LTR9 LTR ERV1 0 612 1 1663 140 15 35 chr4 78529025 78529369 -105759293 + MER61B LTR ERV1 1 425 0 492 188 75 31 chr4 78529590 78529750 -105758912 + MER113 DNA MER1_type? 85 251 -270 1047 188 18 27 chr4 78529848 78530072 -105758590 + MER113 DNA MER1_type? 270 491 -30 229 354 50 35 chr4 78530980 78531178 -105757484 - L3 LINE CR1 -456 1121 921 241 346 25 0 chr4 78531187 78531268 -105757394 - L3 LINE CR1 -1489 88 6 1316 174 9 0 chr4 78531824 78532043 -105756619 + L1MC1 LINE L1 6107 6327 -6 515 265 72 82 chr4 78532385 78532458 -105756204 + L2 LINE L2 2547 2619 -695 1982 137 0 3 chr4 78532458 78532766 -105755896 - AluSx SINE Alu 0 307 1 515 265 72 82 chr4 78532766 78532970 -105755692 + L2 LINE L2 2619 2822 -492 674 285 30 30 chr4 78533056 78533323 -105755339 + L2 LINE L2 3047 3313 0 236 191 41 204 chr4 78534056 78534203 -105754459 - L2 LINE L2 -2 3270 3148 260 292 0 0 chr4 78535979 78536044 -105752618 - MIR SINE MIR -110 152 88 485 279 21 14 chr4 78536340 78536480 -105752182 + MIR SINE MIR 45 185 -77 198 191 0 0 chr4 78536814 78536856 -105751806 + (TA)n Simple_repeat Simple_repeat 2 43 0 181 356 0 14 chr4 78537473 78537546 -105751116 - L2 LINE L2 -4 3309 3238 2244 125 0 0 chr4 78538454 78538757 -105749905 + AluSc SINE Alu 1 303 -6 654 267 228 32 chr4 78539466 78540088 -105748574 - L1MEc LINE L1 -4539 2042 1258 252 0 0 0 chr4 78540772 78540800 -105747862 + (CA)n Simple_repeat Simple_repeat 2 29 0 243 247 104 13 chr4 78540828 78540905 -105747757 - L1ME3A LINE L1 -60 6110 6027 973 163 20 130 chr4 78540906 78541206 -105747456 - ORSL DNA AcHobo 0 275 9 569 236 58 65 chr4 78541385 78541678 -105746984 - L1MC5 LINE L1 -452 7509 7219 273 225 50 25 chr4 78541724 78541804 -105746858 - HAL1b LINE L1 -708 640 559 1588 207 32 11 chr4 78541807 78542150 -105746512 + MLT2D LTR ERVL 62 406 -8 1593 150 48 51 chr4 78542168 78542461 -105746201 + AluJo SINE Alu 3 294 -18 1368 165 44 85 chr4 78542489 78542805 -105745857 - AluJb SINE Alu -9 303 1 1997 246 55 38 chr4 78542950 78543714 -105744948 - L1M4 LINE L1 -1713 4433 3657 2305 134 16 38 chr4 78544315 78544687 -105743975 - THE1B LTR MaLR 0 364 1 28 71 0 0 chr4 78544933 78544989 -105743673 + AT_rich Low_complexity Low_complexity 1 56 0 2179 107 10 0 chr4 78545104 78545395 -105743267 + AluSx SINE Alu 6 299 -13 24 0 0 0 chr4 78545522 78545546 -105743116 + AT_rich Low_complexity Low_complexity 1 24 0 890 236 0 10 chr4 78546341 78546536 -105742126 + MER115 DNA AcHobo 491 683 -10 2255 152 42 42 chr4 78546775 78547182 -105741480 - LTR57 LTR ERVL 0 411 5 2101 226 91 18 chr4 78547197 78547515 -105741147 - MLT1F LTR MaLR -1 541 171 204 40 0 0 chr4 78547515 78547540 -105741122 + (GA)n Simple_repeat Simple_repeat 2 26 0 2101 226 91 18 chr4 78547540 78547725 -105740937 - MLT1F LTR MaLR -371 171 1 467 326 112 0 chr4 78547742 78547966 -105740696 + L2 LINE L2 2872 3120 -193 298 286 59 25 chr4 78548010 78548129 -105740533 + MIR SINE MIR 73 195 -67 241 270 0 16 chr4 78549393 78549456 -105739206 + (TATATG)n Simple_repeat Simple_repeat 3 64 0 270 0 0 0 chr4 78549990 78550003 -105738659 + (CA)n Simple_repeat Simple_repeat 1 43 0 270 0 0 0 chr4 78550003 78550033 -105738629 + (CA)n Simple_repeat Simple_repeat 2 31 0 216 171 0 0 chr4 78550922 78550957 -105737705 + (TG)n Simple_repeat Simple_repeat 1 35 0 25 0 0 0 chr4 78551009 78551034 -105737628 + AT_rich Low_complexity Low_complexity 1 25 0 903 311 47 22 chr4 78552116 78552610 -105736052 + MLT2F LTR ERVL 6 552 -111 1726 178 27 0 chr4 78552669 78552962 -105735700 - AluSx SINE Alu -11 301 1 437 252 119 14 chr4 78552963 78553106 -105735556 + MLT2E LTR ERVL 471 628 0 991 175 19 103 chr4 78553244 78553517 -105735145 - MLT1E1 LTR MaLR -392 262 1 24 0 0 0 chr4 78553550 78553574 -105735088 + AT_rich Low_complexity Low_complexity 1 24 0 320 269 76 53 chr4 78553965 78554136 -105734526 - L1M4 LINE L1 -3650 2496 2322 21 0 0 0 chr4 78554220 78554241 -105734421 + AT_rich Low_complexity Low_complexity 1 21 0 418 258 140 17 chr4 78555260 78555431 -105733231 + MIR3 SINE MIR 6 195 -13 224 226 0 19 chr4 78555562 78555615 -105733047 - L2 LINE L2 0 3313 3262 364 193 164 41 chr4 78556149 78556320 -105732342 + LTR37B LTR ERV1 7 198 -270 813 161 130 71 chr4 78556388 78556642 -105732020 + LTR37B LTR ERV1 198 466 -2 462 65 0 0 chr4 78556761 78556823 -105731839 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 21 36 0 0 chr4 78556935 78556963 -105731699 + AT_rich Low_complexity Low_complexity 1 28 0 1856 189 85 47 chr4 78557207 78557700 -105730962 + MLT2B1 LTR ERVL 1 512 -8 334 303 284 4 chr4 78557745 78557999 -105730663 - L3 LINE CR1 -170 1407 1083 273 306 275 5 chr4 78558054 78558247 -105730415 - MIR SINE MIR 0 262 18 21 36 0 0 chr4 78558354 78558382 -105730280 + AT_rich Low_complexity Low_complexity 1 28 0 197 216 59 0 chr4 78558532 78558583 -105730079 - L3 LINE CR1 -622 955 902 1526 153 102 1 chr4 78558598 78558892 -105729770 - L1MB2 LINE L1 -2 6169 5849 1696 185 20 0 chr4 78558971 78559269 -105729393 - AluJb SINE Alu -8 304 1 488 247 25 19 chr4 78559276 78559434 -105729228 - L1ME4a LINE L1 0 6121 5963 368 217 0 0 chr4 78559470 78559539 -105729123 + Tigger2 DNA MER2_type 1 69 -2649 * 2602 131 50 2 chr4 78559537 78559956 -105728706 + Tigger2 DNA MER2_type 2280 2718 0 1992 129 40 65 chr4 78560004 78560375 -105728287 - MLT1B LTR MaLR 0 390 29 691 286 6 0 chr4 78560532 78560714 -105727948 - L1MB2 LINE L1 -451 5670 5488 2028 131 3 3 chr4 78560772 78561063 -105727599 - AluSx SINE Alu -21 291 1 378 0 0 0 chr4 78561213 78561255 -105727407 + (CA)n Simple_repeat Simple_repeat 2 43 0 256 292 5 27 chr4 78561289 78561391 -105727271 - MER5B DNA MER1_type -53 136 25 449 348 114 36 chr4 78561628 78562048 -105726614 + L2 LINE L2 2820 3272 0 884 154 40 0 chr4 78562112 78562261 -105726401 - FRAM SINE Alu -12 164 10 352 241 36 0 chr4 78562272 78562355 -105726307 + MIR SINE MIR 49 134 -128 1737 108 0 4 chr4 78562525 78562784 -105725878 + L1PA14 LINE L1 5902 6159 -2 670 276 105 13 chr4 78562833 78563072 -105725590 - MIR SINE MIR 0 262 2 5165 101 43 0 chr4 78563221 78563577 -105725085 - L1PB1 LINE L1 -1 6150 5811 324 0 0 0 chr4 78563577 78563613 -105725049 + (CA)n Simple_repeat Simple_repeat 2 37 0 5165 101 43 0 chr4 78563613 78564042 -105724620 - L1PB1 LINE L1 -340 5811 5331 1072 174 77 160 chr4 78564073 78564494 -105724168 - MLT1A1 LTR MaLR -4 374 1 263 304 45 27 chr4 78565283 78565395 -105723267 + MIR3 SINE MIR 10 123 -85 2354 111 0 0 chr4 78565572 78565879 -105722783 - AluSq SINE Alu -6 307 1 2029 142 0 3 chr4 78566186 78566482 -105722180 - AluJb SINE Alu -17 295 1 539 226 14 34 chr4 78566767 78566913 -105721749 + L2 LINE L2 3171 3313 0 819 249 31 43 chr4 78567504 78567761 -105720901 - MIR SINE MIR -7 255 2 3279 209 73 38 chr4 78568039 78568246 -105720416 - L1MD2 LINE L1 -1 6358 6160 405 0 0 0 chr4 78568246 78568291 -105720371 + (TG)n Simple_repeat Simple_repeat 2 46 0 3279 209 73 38 chr4 78568291 78568928 -105719734 - L1MD2 LINE L1 -199 6160 5484 389 303 203 34 chr4 78569232 78569967 -105718695 - L1MD2 LINE L1 -990 5156 4246 2093 126 3 0 chr4 78569967 78570260 -105718402 - AluSx SINE Alu -18 294 1 389 303 203 34 chr4 78570260 78570404 -105718258 - L1MD2 LINE L1 -1900 4246 4128 568 305 133 25 chr4 78570504 78570911 -105717751 - L3 LINE CR1 -718 859 409 1710 171 14 11 chr4 78571784 78572070 -105716592 - AluJb SINE Alu -25 287 1 320 241 30 0 chr4 78572076 78572209 -105716453 + (TA)n Simple_repeat Simple_repeat 2 138 0 273 307 102 16 chr4 78573043 78573170 -105715492 + L2 LINE L2 3102 3239 -33 907 154 6 6 chr4 78574947 78575122 -105713540 + CT-rich Low_complexity Low_complexity 2 176 0 420 236 22 0 chr4 78575654 78575743 -105712919 - L3 LINE CR1 -11 1566 1476 421 306 158 22 chr4 78576640 78576918 -105711744 - L2 LINE L2 -784 2530 2215 1804 172 90 158 chr4 78576932 78577298 -105711364 - LTR8A LTR ERV1 0 727 441 1583 174 0 42 chr4 78577298 78577608 -105711054 - AluJb SINE Alu -15 297 1 1804 172 90 158 chr4 78577608 78578021 -105710641 - LTR8A LTR ERV1 -286 441 1 216 301 0 41 chr4 78578123 78578196 -105710466 + L2 LINE L2 3180 3249 -23 183 315 146 34 chr4 78578333 78578422 -105710240 - L3 LINE CR1 -496 1081 983 761 257 59 23 chr4 78578536 78578878 -105709784 - L1ME LINE L1 -551 5611 5254 1401 255 58 15 chr4 78578905 78579317 -105709345 + L1ME3A LINE L1 5741 6170 0 3087 153 17 67 chr4 78579331 78579447 -105709215 + MLT2B3 LTR ERVL 1 121 -433 6067 77 55 0 chr4 78579447 78581048 -105707614 + L1PA14 LINE L1 4505 6161 0 3087 153 17 67 chr4 78581048 78581514 -105707148 + MLT2B3 LTR ERVL 121 554 0 570 100 0 0 chr4 78581523 78581603 -105707059 - MADE1 DNA Mariner 0 80 1 531 284 171 0 chr4 78582201 78582412 -105706250 + MIR SINE MIR 14 260 -2 258 193 70 0 chr4 78582446 78582503 -105706159 - MER113 DNA MER1_type? -127 394 334 326 347 16 0 chr4 78582539 78582663 -105705999 + LTR33 LTR ERVL 297 422 -99 43 35 0 0 chr4 78582801 78582858 -105705804 + AT_rich Low_complexity Low_complexity 1 57 0 2225 107 0 0 chr4 78583177 78583467 -105705195 - AluSg SINE Alu -20 290 1 2546 139 45 16 chr4 78583515 78583961 -105704701 + MER34C LTR ERV1 1 459 -126 3729 149 62 17 chr4 78583961 78584625 -105704037 + MER39 LTR ERV1 1 694 -13 21 0 0 0 chr4 78584920 78584941 -105703721 + AT_rich Low_complexity Low_complexity 1 21 0 351 264 116 16 chr4 78585190 78585319 -105703343 - MIR SINE MIR -73 189 48 2463 66 3 0 chr4 78585480 78585885 -105702777 - AluSg SINE Alu 0 406 1 201 121 0 0 chr4 78586708 78586741 -105701921 + (CCA)n Simple_repeat Simple_repeat 3 35 0 1133 186 68 0 chr4 78586937 78587157 -105701505 - L1MB3 LINE L1 -3 6180 5946 472 198 79 10 chr4 78587827 78587928 -105700734 + L1MEc LINE L1 36 143 -6253 1694 186 4 4 chr4 78587928 78588208 -105700454 - AluJb SINE Alu -30 282 3 2454 199 55 7 chr4 78588209 78588772 -105699890 - Tigger6a DNA MER2_type -109 974 385 30 0 0 0 chr4 78588772 78588802 -105699860 + AT_rich Low_complexity Low_complexity 1 30 0 1304 150 0 0 chr4 78588823 78589016 -105699646 - AluSg/x SINE Alu -12 298 106 877 174 14 64 chr4 78589019 78589297 -105699365 - Tigger6a DNA MER2_type -726 357 1 2074 265 68 19 chr4 78589299 78589377 -105699285 + L1MEc LINE L1 1624 1697 -4699 185 56 0 56 chr4 78589377 78589413 -105699249 + (CAAAC)n Simple_repeat Simple_repeat 4 37 0 2074 265 68 19 chr4 78589413 78590192 -105698470 + L1MEc LINE L1 1697 2523 -3873 417 20 0 0 chr4 78590228 78590278 -105698384 + (CTATA)n Simple_repeat Simple_repeat 3 52 0 440 228 0 0 chr4 78590307 78590399 -105698263 + L1MEc LINE L1 2695 2786 -3429 628 248 31 5 chr4 78590430 78590615 -105698047 - L1MEc LINE L1 -4142 2103 1936 2080 219 12 54 chr4 78590625 78591222 -105697440 + L1MEc LINE L1 2501 3072 -3143 399 148 16 0 chr4 78591223 78591284 -105697378 + FAM SINE Alu 97 158 -17 719 222 5 53 chr4 78591295 78591502 -105697160 + L1MEc LINE L1 3818 4014 -2201 1028 146 0 0 chr4 78591502 78591667 -105696995 - L1MA2 LINE L1 -2 6302 6138 345 136 85 0 chr4 78591671 78591730 -105696932 - AluJ/FRAM SINE Alu -16 286 223 5900 117 21 2 chr4 78591730 78592844 -105695818 - L1MA2 LINE L1 -156 6148 5014 * 8062 211 66 5 chr4 78592838 78595705 -105692957 + L1ME1 LINE L1 2791 5912 -254 540 252 8 0 chr4 78595725 78595856 -105692806 + L1MA10 LINE L1 6200 6331 -3 213 239 254 0 chr4 78595955 78596022 -105692640 + MIR SINE MIR 108 191 -71 352 92 69 23 chr4 78596404 78596491 -105692171 + GA-rich Low_complexity Low_complexity 4 94 0 660 187 45 22 chr4 78596670 78596804 -105691858 + MIR SINE MIR 109 245 -17 967 179 22 6 chr4 78596890 78597069 -105691593 + MLT1B LTR MaLR 1 182 -208 2067 214 31 18 chr4 78597082 78597539 -105691123 + MLT1B-int LTR MaLR 903 1365 -6 2300 150 2 47 chr4 78597546 78597947 -105690715 + MLT1B LTR MaLR 2 384 -6 297 370 117 38 chr4 78597947 78598290 -105690372 + L2 LINE L2 2895 3264 -8 408 321 56 10 chr4 78598485 78598681 -105689981 - MIR SINE MIR -34 228 24 1674 117 48 4 chr4 78599677 78599926 -105688736 + AluSq SINE Alu 1 260 -53 1308 152 167 15 chr4 78599953 78600216 -105688446 + AluJb SINE Alu 1 303 -9 21 0 0 0 chr4 78600235 78600256 -105688406 + AT_rich Low_complexity Low_complexity 1 21 0 5789 150 63 60 chr4 78600704 78601927 -105686735 + ERVL-B3 LTR ERVL 4537 5763 -1 906 186 68 14 chr4 78601927 78601993 -105686669 + Ricksha DNA DNA 339 416 -838 2169 172 77 7 chr4 78602111 78602541 -105686121 + MLT2B3 LTR ERVL 75 534 -20 207 146 0 0 chr4 78602541 78602582 -105686080 + (TC)n Simple_repeat Simple_repeat 1 41 0 308 149 0 0 chr4 78602582 78602649 -105686013 + MLT2B1 LTR ERVL 454 520 0 186 43 0 0 chr4 78602740 78602763 -105685899 + (CAA)n Simple_repeat Simple_repeat 2 24 0 623 256 68 43 chr4 78602773 78603172 -105685490 + MLT1J LTR MaLR 6 467 -44 235 266 0 16 chr4 78603194 78603258 -105685404 + (CA)n Simple_repeat Simple_repeat 2 64 0 312 349 40 40 chr4 78603828 78603977 -105684685 - L2 LINE L2 0 3272 3124 367 256 80 24 chr4 78604050 78604175 -105684487 + MLT1K LTR MaLR 167 298 -290 228 94 0 0 chr4 78604188 78604220 -105684442 + MLT1K LTR MaLR 549 580 -8 207 210 25 12 chr4 78606468 78606549 -105682113 + (TA)n Simple_repeat Simple_repeat 1 82 0 848 259 78 3 chr4 78606557 78606839 -105681823 - MLT1H LTR MaLR -16 533 231 1543 173 3 21 chr4 78607025 78607308 -105681354 - AluJb SINE Alu -14 298 21 2294 113 0 0 chr4 78607837 78608139 -105680523 - AluSx SINE Alu -10 302 1 2964 208 64 48 chr4 78608166 78609014 -105679648 + MER21B LTR ERV1 1 861 -2 1466 152 4 4 chr4 78609332 78609562 -105679100 + AluSg/x SINE Alu 80 309 -1 1677 195 83 3 chr4 78609860 78610198 -105678464 - MLT1A1 LTR MaLR 0 365 1 1060 108 165 5 chr4 78610454 78610648 -105678014 + MER30 DNA MER1_type 2 226 -4 2276 114 0 3 chr4 78610966 78611265 -105677397 + AluSx SINE Alu 1 298 -14 243 330 123 32 chr4 78611842 78612127 -105676535 + L3b LINE CR1 1122 1432 -151 1935 138 7 3 chr4 78612359 78612656 -105676006 - AluSx SINE Alu -12 300 3 2636 129 29 7 chr4 78613662 78614081 -105674581 + MSTA LTR MaLR 1 428 0 493 0 65 0 chr4 78615208 78615285 -105673377 + (TA)n Simple_repeat Simple_repeat 1 82 0 221 267 118 56 chr4 78615380 78615575 -105673087 - L2 LINE L2 -545 2769 2563 255 93 0 0 chr4 78615813 78615856 -105672806 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 2241 129 3 0 chr4 78616507 78616816 -105671846 - AluSx SINE Alu -2 310 1 307 286 41 12 chr4 78616821 78616992 -105671670 - L1MC4a LINE L1 -1861 5947 5772 973 250 37 50 chr4 78617041 78617421 -105671241 - L1MC4a LINE L1 -717 5434 5299 1679 200 0 0 chr4 78617456 78617751 -105670911 + AluJo SINE Alu 5 299 -13 640 282 141 57 chr4 78617778 78618120 -105670542 - L1MC4a LINE L1 -916 5230 4918 192 40 0 0 chr4 78618120 78618145 -105670517 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2238 111 0 0 chr4 78618147 78618436 -105670226 - AluSx SINE Alu -23 289 1 640 282 141 57 chr4 78618436 78618530 -105670132 - L1MC4a LINE L1 -1228 4918 4754 2041 114 13 23 chr4 78618531 78618704 -105669958 - AluSx SINE Alu -9 303 133 4018 61 91 0 chr4 78618704 78619242 -105669420 - LTR14C LTR ERVK 0 587 1 2041 114 13 23 chr4 78619242 78619374 -105669288 - AluSx SINE Alu -179 133 1 25 31 0 0 chr4 78619423 78619455 -105669207 + AT_rich Low_complexity Low_complexity 1 32 0 264 30 0 0 chr4 78619455 78619488 -105669174 + (TTA)n Simple_repeat Simple_repeat 1 33 0 868 119 0 0 chr4 78619489 78619607 -105669055 - AluSq/x SINE Alu -194 118 1 392 311 72 69 chr4 78619687 78620538 -105668124 - L1MC4a LINE L1 -1542 4604 3785 838 148 7 28 chr4 78620686 78620828 -105667834 + FLAM_C SINE Alu 1 139 -4 2207 95 7 0 chr4 78621546 78621840 -105666822 - AluY SINE Alu -15 296 1 731 202 29 17 chr4 78622187 78622360 -105666302 - MER69A DNA AcHobo -1 176 2 180 0 0 0 chr4 78622777 78622797 -105665865 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 622 308 63 4 chr4 78623175 78623412 -105665250 + MIR SINE MIR 6 256 -6 2332 106 0 0 chr4 78623511 78623812 -105664850 - AluSx SINE Alu -11 301 1 1205 247 44 27 chr4 78623854 78624331 -105664331 - L1ME2 LINE L1 -6 6158 5674 758 212 40 25 chr4 78624336 78624534 -105664128 - L1ME2 LINE L1 -538 5626 5426 302 262 110 55 chr4 78624578 78624723 -105663939 - L1ME4a LINE L1 -17 6104 5952 228 273 0 0 chr4 78624724 78624812 -105663850 - L1MC4 LINE L1 -1340 6702 6615 1939 137 7 3 chr4 78624813 78625112 -105663550 - AluSq SINE Alu -13 300 1 349 242 20 20 chr4 78625138 78625237 -105663425 - MER5B DNA MER1_type -79 99 1 291 206 55 39 chr4 78625384 78625511 -105663151 - L1MC5 LINE L1 -14 8011 7832 24 32 0 0 chr4 78625775 78625806 -105662856 + AT_rich Low_complexity Low_complexity 1 31 0 263 321 48 60 chr4 78625976 78626144 -105662518 + L3 LINE CR1 475 640 -937 2040 146 3 16 chr4 78626162 78626478 -105662184 - AluSx SINE Alu 0 312 1 440 263 39 13 chr4 78626821 78626977 -105661685 - L1ME3A LINE L1 -14 6156 5997 243 0 0 0 chr4 78627664 78627691 -105660971 + (T)n Simple_repeat Simple_repeat 1 27 0 2539 39 7 3 chr4 78627881 78628189 -105660473 - AluY SINE Alu -2 309 1 2394 78 0 7 chr4 78628418 78628727 -105659935 - AluY SINE Alu -4 307 1 332 277 68 9 chr4 78629128 78629350 -105659312 - L1MC4a LINE L1 -280 5882 5646 * 2574 204 54 88 chr4 78629345 78629426 -105659236 + L1MC4 LINE L1 7089 7171 -871 1989 136 4 4 chr4 78629426 78629757 -105658905 - AluSx SINE Alu 0 335 5 2574 204 54 88 chr4 78629757 78630650 -105658012 + L1MC4 LINE L1 7171 8031 -11 255 256 62 81 chr4 78630725 78630807 -105657855 - L1MC4a LINE L1 -612 5509 5427 2355 97 0 13 chr4 78630807 78631118 -105657544 - AluSx SINE Alu -5 307 1 255 256 62 81 chr4 78631118 78631293 -105657369 - L1MC4a LINE L1 -694 5427 5260 1093 104 0 22 chr4 78631875 78631913 -105656749 + (TTTC)n Simple_repeat Simple_repeat 1 215 0 1093 104 0 22 chr4 78631913 78632095 -105656567 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 415 145 0 14 chr4 78632243 78632312 -105656350 + (TCCCC)n Simple_repeat Simple_repeat 1 68 0 1905 151 4 0 chr4 78632313 78632585 -105656077 - AluJb SINE Alu -39 273 1 375 273 82 21 chr4 78633418 78633612 -105655050 - L1ME LINE L1 -404 5717 5512 23 33 0 0 chr4 78633777 78633807 -105654855 + AT_rich Low_complexity Low_complexity 1 30 0 2543 75 0 0 chr4 78633808 78634115 -105654547 + AluY SINE Alu 1 307 -4 273 57 0 0 chr4 78635111 78635146 -105653516 + (GAA)n Simple_repeat Simple_repeat 1 35 0 297 296 10 0 chr4 78635575 78635673 -105652989 - MER117 DNA MER1_type -96 101 3 394 235 12 0 chr4 78635907 78635992 -105652670 + Charlie7 DNA MER1_type 6 91 -2521 2377 94 7 0 chr4 78636009 78636316 -105652346 + AluSc SINE Alu 1 309 0 2169 131 10 3 chr4 78636385 78636691 -105651971 + AluSx SINE Alu 5 312 0 1756 114 88 22 chr4 78636700 78636999 -105651663 + AluSx SINE Alu 1 317 0 370 258 168 19 chr4 78637044 78637253 -105651409 + Charlie7 DNA MER1_type 214 453 -2159 243 135 0 0 chr4 78637256 78637293 -105651369 + U2 snRNA snRNA 1 37 -151 588 86 0 125 chr4 78637450 78637505 -105651157 + L1MB8 LINE L1 6067 6099 -79 1827 155 55 0 chr4 78637505 78637795 -105650867 - AluSx SINE Alu -3 309 4 588 86 0 125 chr4 78637795 78637867 -105650795 + L1MB8 LINE L1 6099 6178 0 651 232 106 8 chr4 78637872 78638118 -105650544 + Charlie7 DNA MER1_type 1864 2133 -479 243 229 0 37 chr4 78638258 78638367 -105650295 + (TAA)n Simple_repeat Simple_repeat 2 106 0 29 70 0 0 chr4 78638410 78638467 -105650195 + AT_rich Low_complexity Low_complexity 1 57 0 232 189 178 0 chr4 78638476 78638566 -105650096 + Charlie7 DNA MER1_type 2476 2581 -31 1590 139 105 15 chr4 78638606 78638873 -105649789 - AluSx SINE Alu -13 299 9 963 254 35 9 chr4 78638932 78639160 -105649502 + MIR SINE MIR 1 234 -28 239 279 29 38 chr4 78640006 78640204 -105648458 - L1MC/D LINE L1 -303 5818 5729 2095 115 0 3 chr4 78640434 78640720 -105647942 - AluSg SINE Alu -25 285 1 261 369 100 0 chr4 78641561 78641691 -105646971 - MIR SINE MIR -88 174 32 988 217 41 32 chr4 78642334 78642555 -105646107 + MER58A DNA MER1_type 2 224 0 1974 135 21 3 chr4 78642805 78643093 -105645569 + AluSx SINE Alu 1 293 -19 192 241 138 23 chr4 78644692 78644779 -105643883 - MIR SINE MIR -53 209 113 972 176 74 29 chr4 78644789 78645082 -105643580 - MSTD LTR MaLR 0 396 60 754 80 9 0 chr4 78645480 78645592 -105643070 - L1MA8 LINE L1 -7 6284 6172 350 223 0 69 chr4 78645641 78645771 -105642891 - L1MC4 LINE L1 0 8042 7922 24 0 0 0 chr4 78645841 78645865 -105642797 + AT_rich Low_complexity Low_complexity 1 24 0 2289 99 0 0 chr4 78645867 78646160 -105642502 - AluSx SINE Alu -17 295 3 2055 133 0 10 chr4 78646162 78646463 -105642199 - AluSx SINE Alu -14 298 1 2845 258 84 8 chr4 78646509 78647577 -105641085 - L1MC4a LINE L1 -1249 6559 5410 23 33 0 0 chr4 78648313 78648343 -105640319 + AT_rich Low_complexity Low_complexity 1 30 0 1810 166 31 3 chr4 78648437 78648726 -105639936 + AluJo SINE Alu 1 297 -15 223 178 0 42 chr4 78649179 78649227 -105639435 - MIR SINE MIR -55 153 106 1600 170 3 39 chr4 78649338 78649644 -105639018 + AluJb SINE Alu 3 297 -15 42 48 0 0 chr4 78650319 78650382 -105638280 + AT_rich Low_complexity Low_complexity 1 63 0 239 377 105 0 chr4 78650692 78650806 -105637856 - L2 LINE L2 -13 3259 3134 1613 168 18 64 chr4 78651755 78652082 -105636580 - AluJo SINE Alu 0 312 1 1074 241 57 17 chr4 78652137 78652554 -105636108 - MLT1J LTR MaLR -4 507 31 1683 157 20 86 chr4 78652740 78652773 -105635889 - MLT1A2 LTR MaLR 0 374 340 1861 148 62 15 chr4 78652773 78653097 -105635565 - MER44D DNA MER2_type 0 609 1 1683 157 20 86 chr4 78653097 78653459 -105635203 - MLT1A2 LTR MaLR -34 340 5 1888 124 21 11 chr4 78653518 78653800 -105634862 - AluSx SINE Alu -27 285 1 1126 199 0 28 chr4 78654086 78654302 -105634360 + MER6B DNA MER2_type 1 210 0 1912 127 3 11 chr4 78654469 78654780 -105633882 + AluJb SINE Alu 1 309 0 2391 100 3 0 chr4 78656508 78656817 -105631845 + AluSp SINE Alu 1 310 -3 2328 88 3 0 chr4 78657063 78657370 -105631292 - AluSq SINE Alu 0 308 1 244 323 20 40 chr4 78657450 78657549 -105631113 - MIR SINE MIR -92 116 20 722 36 0 0 chr4 78660209 78660293 -105628369 - L1PA6 LINE L1 -4 6150 6067 2296 111 0 0 chr4 78660707 78661004 -105627658 - AluSx SINE Alu -15 297 1 6382 133 18 62 chr4 78661553 78661746 -105626916 - L1MA5 LINE L1 -2 6940 6740 2330 107 7 0 chr4 78661746 78662055 -105626607 + AluSx SINE Alu 1 311 -1 6382 133 18 62 chr4 78662055 78662938 -105625724 - L1MA5 LINE L1 -202 6740 5975 1627 163 54 31 chr4 78662938 78663232 -105625430 + AluJo SINE Alu 1 301 -11 6382 133 18 62 chr4 78663232 78663852 -105624810 - L1MA5 LINE L1 -967 5975 5330 7679 208 26 20 chr4 78663852 78665338 -105623324 - L1MA5 LINE L1 -2250 4538 3062 2174 116 7 0 chr4 78665338 78665630 -105623032 - AluSc SINE Alu -15 294 1 7679 208 26 20 chr4 78665630 78666585 -105622077 - L1MA5 LINE L1 -3726 3062 2114 1835 174 69 92 chr4 78666585 78667021 -105621641 + MSTB LTR MaLR 1 426 0 7679 208 26 20 chr4 78667021 78668777 -105619885 - L1MA5 LINE L1 -4674 2114 5 2203 114 0 10 chr4 78668785 78669084 -105619578 - AluSx SINE Alu -16 296 1 1121 218 32 5 chr4 78669323 78669539 -105619123 + MER58A DNA MER1_type 1 222 -2 297 320 49 16 chr4 78669540 78669662 -105619000 - L1MEd LINE L1 -5525 594 469 339 352 52 62 chr4 78669822 78669840 -105618822 - L1MEd LINE L1 -5722 397 380 2399 73 6 13 chr4 78669840 78670155 -105618507 - AluSp SINE Alu 0 313 1 339 352 52 62 chr4 78670155 78670460 -105618202 - L1MEd LINE L1 -5739 380 77 193 281 88 0 chr4 78671284 78671341 -105617321 - L2 LINE L2 -22 3291 3230 1035 324 90 9 chr4 78672434 78673041 -105615621 + L2 LINE L2 2557 3208 -105 983 223 15 34 chr4 78673064 78673329 -105615333 - L1MC4 LINE L1 -430 7612 7353 693 126 22 46 chr4 78673329 78673485 -105615177 + MSTA LTR MaLR 1 198 -157 * 1292 158 8 26 chr4 78673478 78673712 -105614950 - MLT1B LTR MaLR -160 230 1 453 230 0 10 chr4 78673712 78673812 -105614850 - L1MC4 LINE L1 -685 7357 7259 903 132 0 0 chr4 78673812 78673941 -105614721 + THE1B LTR MaLR 1 129 -235 575 196 27 0 chr4 78673943 78674055 -105614607 - L1MC4 LINE L1 -1461 6581 6467 287 213 22 26 chr4 78674476 78674488 -105614174 - AluS SINE Alu -242 66 55 1637 165 0 11 chr4 78674488 78674754 -105613908 - AluJb SINE Alu -46 266 4 287 213 22 26 chr4 78674754 78674830 -105613832 - AluS SINE Alu -253 55 2 2568 132 5 18 chr4 78674950 78675330 -105613332 + THE1C LTR MaLR 1 375 0 10546 112 36 10 chr4 78675330 78676870 -105611792 + THE1C-int LTR MaLR 1 1580 0 2267 123 26 62 chr4 78676870 78677036 -105611626 + THE1C LTR MaLR 1 171 -204 1909 120 68 0 chr4 78677036 78677328 -105611334 - AluSq SINE Alu -1 312 1 2267 123 26 62 chr4 78677328 78677550 -105611112 + THE1C LTR MaLR 171 375 0 548 293 92 35 chr4 78677813 78678096 -105610566 + MLT1K LTR MaLR 204 502 -86 233 256 77 43 chr4 78678211 78678328 -105610334 + L1MC4 LINE L1 6607 6727 -1315 1665 106 34 0 chr4 78678423 78678660 -105610002 - AluSg/x SINE Alu -2 310 66 22 35 0 0 chr4 78678786 78678815 -105609847 + AT_rich Low_complexity Low_complexity 1 29 0 255 295 36 54 chr4 78681007 78681119 -105607543 - MIR SINE MIR -90 172 63 1975 144 0 0 chr4 78681656 78681963 -105606699 + AluSx SINE Alu 1 307 0 744 326 99 8 chr4 78681971 78682336 -105606326 + MLT1J LTR MaLR 1 398 -113 254 312 32 0 chr4 78682387 78682480 -105606182 - L2 LINE L2 -228 3044 2949 23 33 0 0 chr4 78682480 78682510 -105606152 + AT_rich Low_complexity Low_complexity 1 30 0 225 310 23 0 chr4 78682538 78682625 -105606037 - MIR SINE MIR -56 206 118 1228 258 58 16 chr4 78682702 78683181 -105605481 + MLT1E LTR MaLR 1 591 -2 786 244 102 86 chr4 78683232 78683663 -105604999 + MLT1J2 LTR MaLR 3 440 -10 231 343 137 0 chr4 78683822 78683924 -105604738 - MIR SINE MIR -58 150 35 1344 146 10 0 chr4 78685069 78685268 -105603394 - AluJb SINE Alu -1 311 111 247 304 0 0 chr4 78685628 78685684 -105602978 + L2 LINE L2 3186 3241 -31 342 313 30 15 chr4 78685689 78685820 -105602842 + MIR SINE MIR 17 149 -113 197 309 44 0 chr4 78686642 78686710 -105601952 + L2 LINE L2 2686 2756 -558 383 111 0 14 chr4 78686748 78686820 -105601842 - Charlie4 DNA MER1_type -67 1894 1824 599 144 31 0 chr4 78686820 78686917 -105601745 + AluJo SINE Alu 36 135 -177 1160 137 0 126 chr4 78686917 78687172 -105601490 + AluJb SINE Alu 84 306 -6 4661 114 64 60 chr4 78687230 78687527 -105601135 - L1PA16 LINE L1 -1 6165 5871 1747 155 0 50 chr4 78687527 78687830 -105600832 - AluJb SINE Alu -24 288 1 4661 114 64 60 chr4 78687830 78688393 -105600269 - L1PA16 LINE L1 -295 5871 5302 648 130 30 0 chr4 78688410 78688510 -105600152 + AluJo SINE Alu 36 138 -174 770 245 136 32 chr4 78688529 78688868 -105599794 - Charlie4a DNA MER1_type -11 497 124 1559 155 62 14 chr4 78688900 78689191 -105599471 + AluSx SINE Alu 1 305 -7 632 62 0 0 chr4 78689191 78689271 -105599391 - HY3 scRNA scRNA -3 98 19 513 103 0 112 chr4 78689281 78689296 -105599366 - Charlie4a DNA MER1_type -371 137 122 2050 89 48 7 chr4 78689296 78689588 -105599074 - AluSq SINE Alu -9 304 1 513 103 0 112 chr4 78689588 78689679 -105598983 - Charlie4a DNA MER1_type -386 122 43 1343 138 103 135 chr4 78689679 78690137 -105598525 + LTR7 LTR ERV1 1 443 -7 367 232 145 22 chr4 78690364 78690502 -105598160 - MLT1J LTR MaLR -14 497 343 1868 149 0 13 chr4 78690779 78691080 -105597582 - AluJo SINE Alu -7 305 9 253 231 0 31 chr4 78691126 78691191 -105597471 + LTR67 LTR ERVL 495 557 0 2454 101 132 11 chr4 78691614 78691992 -105596670 + MSTA LTR MaLR 3 426 -2 385 246 60 70 chr4 78692149 78692348 -105596314 - L2 LINE L2 -1 3312 3116 340 235 0 0 chr4 78693244 78693312 -105595350 - MLT1K LTR MaLR 0 588 521 236 339 27 0 chr4 78693471 78693583 -105595079 - MLT1K LTR MaLR -348 240 126 197 344 0 16 chr4 78694069 78694133 -105594529 - L2 LINE L2 -9 3263 3201 2397 87 3 3 chr4 78694662 78694961 -105593701 + AluSp SINE Alu 1 299 -14 379 259 167 46 chr4 78694976 78695150 -105593512 + MIR SINE MIR 59 253 -9 969 149 0 0 chr4 78695819 78695960 -105592702 + AluJb SINE Alu 1 141 -171 25 0 0 0 chr4 78695977 78696002 -105592660 + AT_rich Low_complexity Low_complexity 1 25 0 617 10 0 61 chr4 78696226 78696324 -105592338 + (TTCC)n Simple_repeat Simple_repeat 2 93 0 2042 134 10 0 chr4 78696332 78696639 -105592023 - AluSg SINE Alu 0 310 1 588 274 200 0 chr4 78696647 78696822 -105591840 - LTR16C LTR ERVL -197 294 85 297 276 102 24 chr4 78697012 78697120 -105591542 + L2 LINE L2 3174 3295 -18 2098 105 0 48 chr4 78697120 78697433 -105591229 + AluSx SINE Alu 1 298 -14 297 276 102 24 chr4 78697433 78697451 -105591211 + L2 LINE L2 3295 3310 -3 324 284 52 35 chr4 78698439 78698555 -105590107 - L2 LINE L2 -8 3264 3147 474 306 86 27 chr4 78699159 78699381 -105589281 + MIR SINE MIR 20 254 -8 908 96 0 0 chr4 78700533 78700658 -105588004 + AluSg/x SINE Alu 185 309 -3 2142 97 57 0 chr4 78700658 78700958 -105587704 + MER57B LTR ERV1 115 431 -3 325 155 0 0 chr4 78701528 78701586 -105587076 - Alu SINE Alu -4 298 241 272 31 0 0 chr4 78701585 78701617 -105587045 + MER4A LTR ERV1 554 585 -79 * 204 40 0 0 chr4 78701634 78701659 -105587003 + (TA)n Simple_repeat Simple_repeat 2 26 0 308 91 23 0 chr4 78701679 78701723 -105586939 + AluS SINE Alu 21 65 -238 255 143 95 0 chr4 78701720 78701793 -105586869 + MLT1C LTR MaLR 46 101 -366 * 569 173 4 38 chr4 78701871 78702113 -105586549 + (TA)n Simple_repeat Simple_repeat 1 233 0 235 156 0 0 chr4 78702126 78702171 -105586491 + LTR66 LTR ERVL 395 439 -171 227 229 48 48 chr4 78702172 78702255 -105586407 - L1MC4 LINE L1 -1346 6696 6614 226 189 232 11 chr4 78702377 78702472 -105586190 - MIR SINE MIR -15 247 132 1336 201 112 55 chr4 78702485 78702923 -105585739 + MLT1C LTR MaLR 5 467 0 236 250 0 0 chr4 78702988 78703040 -105585622 + GA-rich Low_complexity Low_complexity 5 56 0 2252 74 3 10 chr4 78703825 78704123 -105584539 - AluSx SINE Alu -16 296 1 204 206 0 0 chr4 78705943 78705977 -105582685 + (CGTG)n Simple_repeat Simple_repeat 2 35 0 202 205 96 48 chr4 78706522 78706605 -105582057 - MIR3 SINE MIR -11 197 111 28 29 0 0 chr4 78706644 78706679 -105581983 + AT_rich Low_complexity Low_complexity 1 35 0 315 0 0 0 chr4 78706679 78706714 -105581948 + (TG)n Simple_repeat Simple_repeat 2 36 0 762 157 9 0 chr4 78706726 78706841 -105581821 - FLAM_C SINE Alu -26 117 2 639 256 95 41 chr4 78706876 78707118 -105581544 + MIR SINE MIR 8 262 0 392 246 103 8 chr4 78708030 78708156 -105580506 + MER117 DNA MER1_type 19 156 -41 2297 118 3 0 chr4 78708963 78709269 -105579393 + AluSx SINE Alu 1 307 -5 320 291 73 63 chr4 78709688 78709764 -105578898 - MIR SINE MIR -24 238 164 2146 131 0 13 chr4 78709764 78710077 -105578585 - AluSx SINE Alu -3 309 1 320 291 73 63 chr4 78710077 78710206 -105578456 - MIR SINE MIR -98 164 31 1516 160 55 51 chr4 78710326 78710619 -105578043 - AluJb SINE Alu -18 294 1 2356 118 14 77 chr4 78710768 78711184 -105577478 - MLT1B LTR MaLR 0 390 1 2163 125 0 3 chr4 78711803 78712115 -105576547 + AluSq SINE Alu 1 311 -2 1283 179 5 0 chr4 78712118 78712336 -105576326 + AluJb SINE Alu 13 231 -81 2057 120 17 3 chr4 78712723 78713024 -105575638 - AluSx SINE Alu -2 310 6 437 212 62 9 chr4 78713172 78713285 -105575377 - MIR SINE MIR -47 215 97 409 233 68 0 chr4 78714143 78714246 -105574416 - MER103 DNA DNA -9 157 48 1959 150 0 17 chr4 78714246 78714546 -105574116 + AluJb SINE Alu 1 295 -17 22 0 0 0 chr4 78715027 78715049 -105573613 + AT_rich Low_complexity Low_complexity 1 22 0 194 0 39 0 chr4 78715054 78715080 -105573582 + (TTAAA)n Simple_repeat Simple_repeat 1 27 0 2189 105 0 0 chr4 78715086 78715372 -105573290 - AluSx SINE Alu -26 286 1 2698 46 0 0 chr4 78716334 78716640 -105572022 - AluY SINE Alu -5 306 1 746 154 81 0 chr4 78716942 78717065 -105571597 - FLAM_C SINE Alu 0 133 1 528 219 106 0 chr4 78718151 78718274 -105570388 + FLAM_A SINE Alu 1 136 -6 237 65 0 0 chr4 78718530 78718561 -105570101 + (TG)n Simple_repeat Simple_repeat 2 32 0 24 53 0 0 chr4 78718594 78718632 -105570030 + AT_rich Low_complexity Low_complexity 1 38 0 1731 132 6 77 chr4 78718632 78718800 -105569862 - AluSx SINE Alu -23 289 111 240 35 0 0 chr4 78718800 78718829 -105569833 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2160 121 0 0 chr4 78718829 78719111 -105569551 - AluSx SINE Alu -30 282 1 1731 132 6 77 chr4 78719111 78719252 -105569410 - AluSx SINE Alu -199 113 1 761 138 0 0 chr4 78719312 78719421 -105569241 - AluJb SINE Alu -203 109 1 243 0 0 0 chr4 78719492 78719519 -105569143 + (ATG)n Simple_repeat Simple_repeat 3 29 0 391 215 181 27 chr4 78719520 78719818 -105568844 - L1MC5 LINE L1 -51 7910 7567 290 265 121 72 chr4 78720074 78720450 -105568212 + L1ME3 LINE L1 5548 5957 -205 22 35 0 0 chr4 78720567 78720596 -105568066 + AT_rich Low_complexity Low_complexity 1 29 0 2440 80 0 3 chr4 78720600 78720902 -105567760 + AluSc SINE Alu 1 301 -8 360 0 0 0 chr4 78720902 78720942 -105567720 + (TCTA)n Simple_repeat Simple_repeat 2 41 0 1028 160 27 21 chr4 78721249 78721436 -105567226 - MER20 DNA MER1_type -2 217 30 2084 165 3 40 chr4 78721827 78722203 -105566459 + MLT1A1 LTR MaLR 4 365 0 1678 125 86 0 chr4 78722709 78722965 -105565697 + AluJb SINE Alu 1 278 -34 1815 150 3 25 chr4 78723873 78724193 -105564469 - MER4D LTR ERV1 -17 886 574 606 210 25 0 chr4 78724198 78724317 -105564345 - MER4E LTR ERV1 -468 311 190 2075 109 3 7 chr4 78724317 78724600 -105564062 + AluSx SINE Alu 1 282 -30 303 162 18 51 chr4 78724626 78725300 -105563362 + (TA)n Simple_repeat Simple_repeat 1 651 0 221 222 0 70 chr4 78725477 78725662 -105563000 + (TA)n Simple_repeat Simple_repeat 2 173 0 207 0 0 0 chr4 78725664 78725687 -105562975 + (TC)n Simple_repeat Simple_repeat 2 24 0 571 124 0 22 chr4 78725693 78725792 -105562870 - MER4D LTR ERV1 -553 319 114 568 215 9 0 chr4 78727024 78727131 -105561531 + MER81 DNA DNA 7 114 0 718 185 22 90 chr4 78727440 78727618 -105561044 + AluJb SINE Alu 134 299 -13 1981 128 11 7 chr4 78727967 78728301 -105560361 - AluSx SINE Alu 0 335 1 410 294 130 17 chr4 78728470 78728701 -105559961 + MIR SINE MIR 2 258 -4 2019 113 3 7 chr4 78729583 78729874 -105558788 - AluSg SINE Alu -20 290 1 2321 87 0 10 chr4 78729947 78730257 -105558405 + AluY SINE Alu 1 307 -4 2401 55 10 3 chr4 78730486 78730793 -105557869 + AluY SINE Alu 1 309 -2 450 0 0 0 chr4 78730983 78731033 -105557629 + (A)n Simple_repeat Simple_repeat 1 50 0 287 355 0 11 chr4 78731187 78731331 -105557331 + MIR SINE MIR 8 146 -62 514 265 59 7 chr4 78731418 78731554 -105557108 - MIR3 SINE MIR -36 172 30 210 275 0 0 chr4 78732643 78732683 -105555979 + MIR3 SINE MIR 117 156 -52 1565 206 84 30 chr4 78732700 78733069 -105555593 + MLT1B LTR MaLR 1 389 -1 28 61 0 0 chr4 78734952 78735001 -105553661 + AT_rich Low_complexity Low_complexity 1 49 0 1546 184 101 6 chr4 78735001 78735359 -105553303 + Charlie5 DNA MER1_type 2233 2624 0 705 267 185 79 chr4 78736148 78736666 -105551996 + MLT1G1 LTR MaLR 40 590 0 1289 257 118 17 chr4 78737042 78737120 -105551542 + MER77 LTR ERV1 175 244 -433 180 0 0 0 chr4 78737120 78737140 -105551522 + (CAAT)n Simple_repeat Simple_repeat 3 22 0 1289 257 118 17 chr4 78737140 78737468 -105551194 + MER77 LTR ERV1 244 673 -4 261 0 0 0 chr4 78738196 78738225 -105550437 + (TG)n Simple_repeat Simple_repeat 1 29 0 29 84 0 0 chr4 78738238 78738309 -105550353 + AT_rich Low_complexity Low_complexity 1 71 0 297 0 0 0 chr4 78739182 78739215 -105549447 + (CA)n Simple_repeat Simple_repeat 1 33 0 28 61 0 0 chr4 78739294 78739343 -105549319 + AT_rich Low_complexity Low_complexity 1 49 0 330 98 0 0 chr4 78739448 78739499 -105549163 + (CA)n Simple_repeat Simple_repeat 2 52 0 208 299 126 0 chr4 78741277 78741364 -105547298 - L2 LINE L2 -1 3312 3215 236 229 0 0 chr4 78741372 78741433 -105547229 - L2 LINE L2 -232 3081 3021 30 83 0 0 chr4 78742366 78742438 -105546224 + AT_rich Low_complexity Low_complexity 1 72 0 636 284 40 27 chr4 78743464 78743689 -105544973 - MIR SINE MIR -2 260 33 333 225 0 0 chr4 78745250 78745321 -105543341 - L1ME LINE L1 -506 5615 5545 369 140 0 0 chr4 78745460 78745517 -105543145 + MER5B DNA MER1_type 2 58 -120 478 257 43 0 chr4 78746051 78746191 -105542471 - L1ME4a LINE L1 -268 5853 5708 1682 232 96 38 chr4 78746193 78746723 -105541939 - MLT1F1 LTR MaLR 0 567 7 354 182 0 0 chr4 78746955 78747021 -105541641 - L1ME4a LINE L1 -513 5608 5543 563 322 57 32 chr4 78747544 78747945 -105540717 - MLT1L LTR MaLR 0 615 205 32 0 0 0 chr4 78748317 78748349 -105540313 + AT_rich Low_complexity Low_complexity 1 32 0 1567 159 9 75 chr4 78748801 78749122 -105539540 - AluJb SINE Alu -12 300 1 25 31 0 0 chr4 78749220 78749252 -105539410 + AT_rich Low_complexity Low_complexity 1 32 0 739 255 0 31 chr4 78749332 78749493 -105539169 - FAM SINE Alu -19 156 1 415 329 55 46 chr4 78749585 78749932 -105538730 - L2 LINE L2 -1 3271 2922 2219 87 3 13 chr4 78750451 78750751 -105537911 - AluSc SINE Alu -12 297 1 203 307 13 27 chr4 78752110 78752185 -105536477 - MER5A DNA MER1_type 0 189 116 * 353 303 33 33 chr4 78752136 78752258 -105536404 + MER5B DNA MER1_type 26 147 -31 1719 57 5 5 chr4 78753443 78753653 -105535009 - AluY SINE Alu -101 210 1 33 0 0 0 chr4 78753653 78753686 -105534976 + AT_rich Low_complexity Low_complexity 1 33 0 2174 106 3 0 chr4 78753852 78754145 -105534517 - AluSx SINE Alu -18 294 1 1970 118 14 4 chr4 78754217 78754538 -105534124 - AluSq SINE Alu 0 324 1 396 191 204 14 chr4 78754538 78754678 -105533984 - L1MB4 LINE L1 -44 6136 5969 2291 173 26 5 chr4 78754797 78755214 -105533448 - MSTB LTR MaLR 0 426 1 1594 167 0 11 chr4 78756607 78756870 -105531792 + MER47B DNA MER2_type 157 416 -2 659 203 0 0 chr4 78756872 78757010 -105531652 + L1MD3 LINE L1 7834 7971 -24 330 336 9 9 chr4 78757029 78757145 -105531517 + L2 LINE L2 3188 3303 -10 330 284 53 21 chr4 78757175 78757513 -105531149 - L1M4 LINE L1 -2989 3157 2809 296 254 22 29 chr4 78757535 78757673 -105530989 - L1M4 LINE L1 -3824 2322 2186 21 36 0 0 chr4 78757696 78757724 -105530938 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 78758708 78758730 -105529932 + AT_rich Low_complexity Low_complexity 1 22 0 313 263 62 0 chr4 78759252 78759332 -105529330 - MIR3 SINE MIR 0 208 124 356 342 40 7 chr4 78759559 78759708 -105528954 - MER5A DNA MER1_type -1 188 35 420 328 40 11 chr4 78759715 78759889 -105528773 + MIR SINE MIR 38 216 -46 2039 77 18 39 chr4 78759899 78760184 -105528478 + AluSg SINE Alu 21 299 -11 601 247 70 6 chr4 78762549 78762707 -105525955 - MER5B DNA MER1_type -1 177 10 2329 67 0 20 chr4 78764008 78764307 -105524355 + AluY SINE Alu 1 293 -18 396 250 33 17 chr4 78764316 78764436 -105524226 - MIR SINE MIR -1 261 140 1898 188 58 23 chr4 78764442 78764836 -105523826 - MLT1C LTR MaLR 0 467 60 185 132 26 0 chr4 78764871 78764909 -105523753 + GA-rich Low_complexity Low_complexity 1 39 0 397 326 28 33 chr4 78765469 78765650 -105523012 + MIR SINE MIR 13 192 -70 712 320 93 13 chr4 78765660 78766038 -105522624 - MLT1K LTR MaLR 0 588 181 835 266 56 32 chr4 78766488 78766699 -105521963 - MIR SINE MIR 0 262 42 2365 46 0 3 chr4 78766699 78767010 -105521652 + AluY SINE Alu 1 310 0 835 266 56 32 chr4 78767010 78767049 -105521613 - MIR SINE MIR -220 42 5 250 289 137 24 chr4 78767058 78767394 -105521268 - L1ME4a LINE L1 -44 6077 5704 357 340 19 31 chr4 78767518 78767677 -105520985 + MIR SINE MIR 25 181 -81 376 249 89 99 chr4 78767754 78768148 -105520514 - L1ME4a LINE L1 -34 6087 5698 769 296 68 0 chr4 78768453 78768659 -105520003 + MIR SINE MIR 12 231 -31 946 201 94 39 chr4 78768671 78768905 -105519757 - MIR SINE MIR -10 252 6 246 207 0 126 chr4 78768985 78769096 -105519566 - L1ME4a LINE L1 -449 5672 5576 272 345 28 21 chr4 78769205 78769347 -105519315 - L1ME4a LINE L1 -549 5572 5430 234 210 81 0 chr4 78769475 78769537 -105519125 + MIR SINE MIR 156 222 -40 508 110 0 0 chr4 78769544 78769617 -105519045 + Alu SINE Alu 224 296 -14 1769 115 31 3 chr4 78769628 78769914 -105518748 + L1MA5A LINE L1 6000 6293 -4 724 148 0 16 chr4 78769926 78770054 -105518608 + L1PB1 LINE L1 6026 6151 0 22 35 0 0 chr4 78770486 78770515 -105518147 + AT_rich Low_complexity Low_complexity 1 29 0 234 213 40 13 chr4 78770531 78770606 -105518056 + L1M4 LINE L1 1146 1222 -5320 932 203 28 6 chr4 78770721 78770903 -105517759 + Tigger5 DNA MER2_type 7 192 -2131 583 308 118 9 chr4 78771759 78771980 -105516682 - MIR SINE MIR -11 251 7 23 0 0 0 chr4 78772267 78772290 -105516372 + AT_rich Low_complexity Low_complexity 1 23 0 285 309 24 0 chr4 78774569 78774653 -105514009 + L2 LINE L2 3186 3271 -1 195 237 0 0 chr4 78774745 78774783 -105513879 - MIR3 SINE MIR -51 157 120 385 328 187 38 chr4 78774799 78775329 -105513333 - L3 LINE CR1 -79 1498 890 209 360 11 0 chr4 78775551 78775640 -105513022 - L3 LINE CR1 -1075 502 413 1959 124 4 0 chr4 78775692 78775967 -105512695 + AluSx SINE Alu 24 299 -13 310 344 45 57 chr4 78776206 78776363 -105512299 - L3 LINE CR1 -1205 372 218 320 345 9 18 chr4 78776368 78776478 -105512184 - MER5B DNA MER1_type -7 171 63 298 361 127 50 chr4 78777424 78777723 -105510939 + L2 LINE L2 2949 3270 -2 369 0 0 0 chr4 78777912 78777953 -105510709 + (TG)n Simple_repeat Simple_repeat 2 42 0 222 269 67 59 chr4 78778649 78778768 -105509894 + L2 LINE L2 3152 3271 -1 189 0 0 0 chr4 78778893 78778914 -105509748 + (CAGTA)n Simple_repeat Simple_repeat 4 24 0 1690 211 25 8 chr4 78778914 78779279 -105509383 - MLT1A2 LTR MaLR -3 371 1 484 89 0 22 chr4 78781087 78781177 -105507485 + (GA)n Simple_repeat Simple_repeat 2 89 0 352 280 133 45 chr4 78781434 78781665 -105506997 - LTR16C LTR ERVL -17 474 216 814 195 45 68 chr4 78781665 78781886 -105506776 + MER20 DNA MER1_type 4 219 0 352 280 133 45 chr4 78781886 78781918 -105506744 - LTR16C LTR ERVL -275 216 188 204 40 0 0 chr4 78783003 78783028 -105505634 + (TG)n Simple_repeat Simple_repeat 2 26 0 207 0 0 0 chr4 78783090 78783113 -105505549 + (CA)n Simple_repeat Simple_repeat 2 24 0 2222 103 3 0 chr4 78783118 78783420 -105505242 - AluSx SINE Alu -9 303 1 275 256 145 29 chr4 78783691 78783898 -105504764 + L1ME LINE L1 5638 5868 -253 259 270 51 20 chr4 78783916 78784060 -105504602 + L1ME4a LINE L1 5816 5965 -156 655 246 128 24 chr4 78784493 78784704 -105503958 - MIR SINE MIR 0 262 30 1300 189 25 116 chr4 78785764 78786131 -105502531 + MLT1A2 LTR MaLR 3 334 -40 1676 173 11 18 chr4 78786131 78786442 -105502220 - AluJb SINE Alu 0 309 1 1300 189 25 116 chr4 78786442 78786470 -105502192 + MLT1A2 LTR MaLR 334 363 -11 2374 164 20 5 chr4 78786785 78787223 -105501439 - L1PA16 LINE L1 -3 6163 5719 633 332 117 29 chr4 78787341 78788043 -105500619 + L1M4 LINE L1 2983 3746 -2400 834 317 101 34 chr4 78788061 78788682 -105499980 + L1MA9 LINE L1 3805 4467 -1679 2348 220 161 11 chr4 78788695 78789717 -105498945 + L1M4c LINE L1 10 1157 -4984 554 181 7 83 chr4 78789724 78789868 -105498794 + L1M4c LINE L1 1244 1376 -4836 * 4307 158 63 4 chr4 78789864 78790299 -105498363 + L1MA9 LINE L1 4568 4976 -1336 2107 120 7 3 chr4 78790299 78790600 -105498062 + AluSq SINE Alu 1 302 -11 4307 158 63 4 chr4 78790600 78791615 -105497047 + L1MA9 LINE L1 4976 6098 -214 3109 244 71 16 chr4 78791615 78792357 -105496305 + L1PA2 LINE L1 5594 6312 0 30 0 0 0 chr4 78792422 78792452 -105496210 + AT_rich Low_complexity Low_complexity 1 30 0 854 184 108 9 chr4 78793258 78793470 -105495192 - L1MB1 LINE L1 0 6168 5936 381 362 71 12 chr4 78793796 78794216 -105494446 + L1MC/D LINE L1 5319 5763 -2045 304 222 22 22 chr4 78794400 78794490 -105494172 + L1MCa LINE L1 2006 2095 -4331 391 351 26 11 chr4 78794702 78794893 -105493769 - MLT1L LTR MaLR -72 543 350 295 202 155 39 chr4 78795014 78795143 -105493519 - MLT1L LTR MaLR -471 144 1 665 314 21 34 chr4 78796953 78797192 -105491470 - MIR SINE MIR -25 237 2 255 222 16 0 chr4 78797278 78797341 -105491321 - LTR16A LTR ERVL -5 445 382 261 318 98 23 chr4 78797384 78797516 -105491146 - LTR16A LTR ERVL -161 289 148 229 234 0 21 chr4 78797569 78797616 -105491046 - LTR16A LTR ERVL -402 48 3 25 51 0 0 chr4 78798072 78798111 -105490551 + AT_rich Low_complexity Low_complexity 1 39 0 1779 181 22 38 chr4 78798260 78798631 -105490031 + MLT1A1 LTR MaLR 1 365 0 620 229 8 0 chr4 78799385 78799503 -105489159 - MER20 DNA MER1_type -100 119 1 297 353 36 14 chr4 78800029 78800168 -105488494 - MIR SINE MIR -76 186 45 30 27 0 0 chr4 78801177 78801214 -105487448 + AT_rich Low_complexity Low_complexity 1 37 0 320 350 72 6 chr4 78801679 78801859 -105486803 + MIR SINE MIR 30 221 -41 200 385 48 0 chr4 78801947 78802030 -105486632 + L2 LINE L2 3186 3272 0 21 0 0 0 chr4 78803108 78803129 -105485533 + AT_rich Low_complexity Low_complexity 1 21 0 250 232 0 0 chr4 78803815 78803871 -105484791 + MIR SINE MIR 205 260 -2 592 305 80 14 chr4 78803874 78804087 -105484575 - MIR SINE MIR -34 228 2 2179 160 32 34 chr4 78804249 78804719 -105483943 - L1MA9 LINE L1 0 6312 5844 1234 253 131 18 chr4 78804719 78805166 -105483496 - L1M4c LINE L1 -3891 3278 2883 2267 102 0 7 chr4 78805166 78805459 -105483203 + AluSg SINE Alu 1 291 -19 1234 253 131 18 chr4 78805459 78805784 -105482878 - L1M4c LINE L1 -4286 2883 2421 708 180 7 14 chr4 78805790 78805937 -105482725 - L1M4c LINE L1 -6890 201 1 301 245 163 0 chr4 78805943 78806041 -105482621 + MIR SINE MIR 128 241 -21 23 54 0 0 chr4 78806639 78806676 -105481986 + AT_rich Low_complexity Low_complexity 1 37 0 22 70 0 0 chr4 78806960 78807003 -105481659 + AT_rich Low_complexity Low_complexity 1 43 0 200 220 240 20 chr4 78807220 78807320 -105481342 - MIR SINE MIR -16 246 125 222 196 109 0 chr4 78808886 78808932 -105479730 - L2 LINE L2 0 3313 3263 203 61 30 0 chr4 78809368 78809401 -105479261 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 1835 49 4 4 chr4 78809403 78809647 -105479015 - L1PA7 LINE L1 -26 6128 5885 * 4611 65 23 0 chr4 78809646 78810659 -105478003 + L1PA7 LINE L1 4854 5880 -274 543 271 51 81 chr4 78810856 78811266 -105477396 - MLT1L LTR MaLR -13 602 205 297 192 0 0 chr4 78811611 78811663 -105476999 - MLT1A2 LTR MaLR 0 365 314 2914 77 3 3 chr4 78811703 78812093 -105476569 - L1PA8 LINE L1 -3 6169 5780 2164 110 12 0 chr4 78812096 78812432 -105476230 + L1P LINE L1 3608 3947 -2199 650 241 0 0 chr4 78812434 78812592 -105476070 - MLT1A2 LTR MaLR -216 158 1 234 247 135 11 chr4 78813772 78813861 -105474801 + MIR SINE MIR 137 236 -26 316 273 75 56 chr4 78813884 78814045 -105474617 - L2 LINE L2 -181 3091 2928 707 278 24 35 chr4 78814770 78815025 -105473637 + MIR SINE MIR 2 253 -9 254 293 110 73 chr4 78815061 78815289 -105473373 - L2 LINE L2 -865 2449 2204 1093 217 14 0 chr4 78815289 78815510 -105473152 - MER58A DNA MER1_type 0 224 1 254 293 110 73 chr4 78815510 78815609 -105473053 - L2 LINE L2 -1110 2204 2110 1535 171 112 83 chr4 78816298 78816854 -105471808 - L1MC4 LINE L1 -206 7836 7265 848 240 31 8 chr4 78816878 78817132 -105471530 - L1MC4 LINE L1 -967 7075 6816 480 235 86 22 chr4 78817139 78817339 -105471323 - L1MC4 LINE L1 -1366 6629 6441 388 278 90 35 chr4 78818744 78818888 -105469774 - L2 LINE L2 0 3272 3121 220 292 115 0 chr4 78818942 78819055 -105469607 + MIR SINE MIR 137 262 0 1377 181 55 51 chr4 78819090 78819382 -105469280 + AluJb SINE Alu 1 293 -19 247 347 91 100 chr4 78819430 78819880 -105468782 - L2 LINE L2 -525 2789 2344 895 248 38 0 chr4 78820269 78820479 -105468183 + MER20 DNA MER1_type 1 218 -1 1565 235 22 2 chr4 78820871 78821276 -105467386 - Charlie4a DNA MER1_type -89 419 7 2246 206 70 41 chr4 78822958 78823880 -105464782 - Charlie2 DNA MER1_type -1 2861 1913 601 303 70 35 chr4 78823911 78824198 -105464464 - Charlie2 DNA MER1_type -2565 297 1 315 302 104 55 chr4 78824570 78824611 -105464051 + MIR SINE MIR 15 53 -209 2046 125 27 0 chr4 78824611 78824906 -105463756 - AluSq SINE Alu -10 303 1 315 302 104 55 chr4 78824906 78825066 -105463596 + MIR SINE MIR 53 226 -36 462 264 20 40 chr4 78825163 78825193 -105463469 - MIR SINE MIR -83 179 150 3330 48 0 70 chr4 78825193 78825675 -105462987 - LTR7 LTR ERV1 -2 448 1 462 264 20 40 chr4 78825675 78825792 -105462870 - MIR SINE MIR -112 150 35 505 321 167 32 chr4 78828012 78828083 -105460579 + L2 LINE L2 2920 2980 -292 2814 158 8 4 chr4 78828083 78828564 -105460098 + MER31A LTR ERV1 3 485 0 505 321 167 32 chr4 78828564 78828803 -105459859 + L2 LINE L2 2980 3272 0 359 229 96 72 chr4 78828912 78829204 -105459458 - L1MC4 LINE L1 -30 8012 7714 1294 186 14 35 chr4 78829231 78829516 -105459146 - L1MB5 LINE L1 -6 6168 5890 275 299 28 21 chr4 78830358 78830502 -105458160 - MER117 DNA MER1_type 0 197 53 439 286 138 22 chr4 78831444 78831668 -105456994 - MIR SINE MIR 0 262 13 317 261 100 0 chr4 78834542 78834672 -105453990 + L1ME4a LINE L1 5615 5757 -364 304 272 64 24 chr4 78834848 78834973 -105453689 + L1ME4a LINE L1 5992 6121 0 184 232 145 14 chr4 78835005 78835074 -105453588 + MIR3 SINE MIR 82 159 -49 1380 165 64 28 chr4 78835711 78836038 -105452624 - MER44D DNA MER2_type 0 609 1 24 32 0 0 chr4 78836913 78836944 -105451718 + AT_rich Low_complexity Low_complexity 1 31 0 189 0 0 0 chr4 78836967 78836988 -105451674 + (T)n Simple_repeat Simple_repeat 1 21 0 3446 57 7 0 chr4 78837005 78837443 -105451219 - L1PA7 LINE L1 0 6154 5714 493 119 0 0 chr4 78837513 78837580 -105451082 + AluS SINE Alu 2 68 -245 1742 138 16 0 chr4 78837598 78837851 -105450811 + AluSx SINE Alu 23 279 -33 252 0 0 0 chr4 78837851 78837879 -105450783 + (CA)n Simple_repeat Simple_repeat 1 28 0 842 198 35 70 chr4 78838237 78838464 -105450198 - MER20 DNA MER1_type 0 219 1 1900 213 47 9 chr4 78838482 78838932 -105449730 - MLT1C LTR MaLR 0 467 1 353 327 38 6 chr4 78840159 78840318 -105448344 + L1ME4a LINE L1 5767 5930 -191 621 308 38 8 chr4 78841328 78841565 -105447097 - MIR SINE MIR -15 247 4 22 56 0 0 chr4 78842324 78842360 -105446302 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr4 78842405 78842428 -105446234 + AT_rich Low_complexity Low_complexity 1 23 0 609 284 16 33 chr4 78842766 78842949 -105445713 + MIR3 SINE MIR 15 194 -14 251 284 0 25 chr4 78843201 78843282 -105445380 + L2 LINE L2 2431 2509 -805 206 176 0 0 chr4 78843305 78843339 -105445323 + L2 LINE L2 3238 3271 -1 393 261 85 57 chr4 78843374 78843550 -105445112 + MIR SINE MIR 2 182 -80 183 146 55 18 chr4 78843714 78843769 -105444893 + CT-rich Low_complexity Low_complexity 4 60 0 1763 223 17 28 chr4 78844163 78844630 -105444032 + MLT1C LTR MaLR 6 467 0 534 273 60 111 chr4 78844768 78845289 -105443373 + L2 LINE L2 2521 3272 0 809 245 65 55 chr4 78845606 78846023 -105442639 + LTR33 LTR ERVL 45 465 -56 293 253 21 21 chr4 78846578 78846673 -105441989 + MLT1I LTR MaLR 315 409 0 282 199 122 76 chr4 78846778 78846820 -105441842 - MER117 DNA MER1_type -50 147 108 1726 147 132 0 chr4 78846820 78847139 -105441523 - MLT1A1 LTR MaLR 0 365 5 282 199 122 76 chr4 78847139 78847227 -105441435 - MER117 DNA MER1_type -89 108 11 1859 118 37 4 chr4 78848058 78848330 -105440332 - AluSx SINE Alu -13 299 19 602 308 34 68 chr4 78849376 78849645 -105439017 + MIR SINE MIR 2 262 0 242 286 32 76 chr4 78850320 78850514 -105438148 + MIR SINE MIR 7 189 -62 181 217 72 60 chr4 78851015 78851098 -105437564 - L2 LINE L2 -139 3174 3091 * 388 322 52 40 chr4 78851095 78851269 -105437393 - L2 LINE L2 -3 3269 3094 671 210 0 0 chr4 78851322 78851446 -105437216 - AluJb SINE Alu -188 124 1 28 0 0 0 chr4 78851536 78851564 -105437098 + AT_rich Low_complexity Low_complexity 1 28 0 540 323 65 5 chr4 78851590 78851791 -105436871 - MIR SINE MIR -42 220 8 311 323 36 36 chr4 78851930 78852097 -105436565 - Charlie8 DNA MER1_type -2250 167 1 440 290 84 8 chr4 78852690 78852821 -105435841 + L2 LINE L2 3132 3272 0 1057 288 97 41 chr4 78853041 78853558 -105435104 - MLT1H LTR MaLR 0 549 4 359 327 34 34 chr4 78853696 78853904 -105434758 - L2 LINE L2 0 3272 3065 2027 93 33 118 chr4 78854018 78854416 -105434246 + THE1B LTR MaLR 1 364 0 337 185 370 0 chr4 78854618 78854699 -105433963 + MIR SINE MIR 43 153 -109 387 257 9 18 chr4 78854807 78854920 -105433742 + MIR SINE MIR 124 235 -27 219 139 0 47 chr4 78855972 78856015 -105432647 + MIR SINE MIR 16 56 -152 330 272 10 28 chr4 78856077 78856191 -105432471 + MIR SINE MIR 36 145 -63 618 284 108 5 chr4 78856377 78856581 -105432081 + MIR SINE MIR 8 232 -30 1406 172 29 54 chr4 78857105 78857419 -105431243 + AluJo SINE Alu 1 306 -6 188 228 0 13 chr4 78857502 78857581 -105431081 + (TATG)n Simple_repeat Simple_repeat 2 79 0 265 296 0 0 chr4 78857931 78858002 -105430660 - HAL1 LINE L1 -939 1568 1498 2425 82 3 0 chr4 78858396 78858702 -105429960 - AluY SINE Alu -2 309 3 200 256 116 23 chr4 78859119 78859205 -105429457 + L2 LINE L2 3179 3272 0 571 278 140 53 chr4 78859590 78859946 -105428716 - L2 LINE L2 0 3313 2927 423 0 0 0 chr4 78860588 78860635 -105428027 + (CA)n Simple_repeat Simple_repeat 2 48 0 26 0 0 0 chr4 78862087 78862113 -105426549 + AT_rich Low_complexity Low_complexity 1 26 0 4249 183 14 32 chr4 78863120 78864053 -105424609 - L1MA10 LINE L1 -1 6397 5482 4809 190 28 3 chr4 78864074 78864407 -105424255 - L1MA10 LINE L1 -860 5350 5027 180 0 0 0 chr4 78864407 78864427 -105424235 + (TTTTC)n Simple_repeat Simple_repeat 5 24 0 4809 190 28 3 chr4 78864427 78865097 -105423565 - L1MA10 LINE L1 -1183 5027 4322 2501 241 42 36 chr4 78865098 78865946 -105422716 - L1MA10 LINE L1 -4153 2058 1217 297 0 0 0 chr4 78865946 78865979 -105422683 + (TG)n Simple_repeat Simple_repeat 2 34 0 2501 241 42 36 chr4 78865979 78866769 -105421893 - L1MA10 LINE L1 -4994 1217 2 187 197 0 30 chr4 78867524 78867590 -105421072 + CT-rich Low_complexity Low_complexity 2 65 0 231 304 25 13 chr4 78869255 78869334 -105419328 - MLT1L LTR MaLR -340 275 196 2490 64 0 0 chr4 78869344 78869655 -105419007 - AluY SINE Alu 0 311 1 329 264 0 0 chr4 78869655 78869727 -105418935 - MLT1L LTR MaLR -404 211 140 207 406 0 0 chr4 78869987 78870093 -105418569 + L2 LINE L2 2206 2311 -1003 270 239 64 83 chr4 78870217 78870326 -105418336 + LTR33A LTR ERVL 60 166 -357 1574 170 60 81 chr4 78871074 78871456 -105417206 - MLT1A2 LTR MaLR 0 374 1 273 293 128 8 chr4 78871572 78871705 -105416957 - MIR SINE MIR -18 244 96 23 0 0 0 chr4 78871720 78871743 -105416919 + AT_rich Low_complexity Low_complexity 1 23 0 1213 40 0 7 chr4 78871744 78871894 -105416768 - L1PA6 LINE L1 -8 6146 5998 206 264 110 44 chr4 78872617 78872708 -105415954 + MIR SINE MIR 110 206 -56 489 281 111 43 chr4 78872979 78873491 -105415171 + L1ME4a LINE L1 5365 5911 -210 272 273 65 32 chr4 78873510 78873664 -105414998 + L1ME4a LINE L1 5957 6115 -6 213 284 136 0 chr4 78873684 78873772 -105414890 - L3b LINE CR1 -212 1371 1272 21 36 0 0 chr4 78873802 78873830 -105414832 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr4 78874034 78874059 -105414603 + AT_rich Low_complexity Low_complexity 1 25 0 228 379 8 16 chr4 78874114 78874238 -105414424 + MIR SINE MIR 32 154 -108 343 316 94 8 chr4 78874791 78874908 -105413754 - MIR3 SINE MIR -42 166 40 450 0 0 0 chr4 78876225 78876275 -105412387 + (CA)n Simple_repeat Simple_repeat 2 51 0 180 77 0 0 chr4 78876524 78876550 -105412112 + (TCCA)n Simple_repeat Simple_repeat 4 29 0 292 271 69 42 chr4 78877169 78877313 -105411349 - L1ME3A LINE L1 -24 6146 5999 283 299 39 19 chr4 78877515 78877669 -105410993 - L1MC5 LINE L1 -724 7237 7081 883 213 11 139 chr4 78877714 78878095 -105410567 - L1MC5 LINE L1 -1004 6957 6626 27 96 0 0 chr4 78878110 78878193 -105410469 + AT_rich Low_complexity Low_complexity 1 83 0 7758 15 0 2 chr4 78879056 78880279 -105408383 + L1PA3 LINE L1 4923 6142 -13 209 32 0 32 chr4 78880282 78880313 -105408349 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 21 0 0 0 chr4 78880383 78880404 -105408258 + AT_rich Low_complexity Low_complexity 1 21 0 478 268 0 0 chr4 78880765 78880862 -105407800 + MIR3 SINE MIR 81 177 -31 324 319 103 17 chr4 78881602 78881718 -105406944 - L2 LINE L2 -1 3271 3146 818 277 44 33 chr4 78882251 78882522 -105406140 - LTR33 LTR ERVL -247 274 1 225 276 53 0 chr4 78882535 78882611 -105406051 + L3 LINE CR1 487 566 -1011 284 304 225 14 chr4 78882675 78882955 -105405707 + L3 LINE CR1 703 1041 -536 232 250 188 0 chr4 78883417 78883513 -105405149 - MIR SINE MIR -18 244 131 23 33 0 0 chr4 78884164 78884194 -105404468 + AT_rich Low_complexity Low_complexity 1 30 0 229 208 21 0 chr4 78885529 78885577 -105403085 + GA-rich Low_complexity Low_complexity 4 52 0 325 201 21 7 chr4 78885985 78886134 -105402528 + (TG)n Simple_repeat Simple_repeat 1 151 0 239 161 18 0 chr4 78886227 78886283 -105402379 + (TG)n Simple_repeat Simple_repeat 2 58 0 464 207 223 0 chr4 78886637 78886758 -105401904 - MIR SINE MIR -108 154 7 222 260 229 0 chr4 78887151 78887247 -105401415 + L2 LINE L2 3195 3312 -1 187 122 41 41 chr4 78887514 78887563 -105401099 + (TATAG)n Simple_repeat Simple_repeat 2 50 0 7107 59 13 61 chr4 78887886 78889756 -105398906 + SVA Other Other 11 1386 0 437 276 42 78 chr4 78890179 78890303 -105398359 + MER5A DNA MER1_type 5 122 -67 2382 42 0 3 chr4 78890303 78890610 -105398052 - AluY SINE Alu 0 306 1 437 276 42 78 chr4 78890610 78890676 -105397986 + MER5A DNA MER1_type 122 189 0 786 137 23 15 chr4 78891420 78891551 -105397111 + AluSq/x SINE Alu 1 132 -180 1114 102 0 0 chr4 78891911 78892068 -105396594 - L1P4 LINE L1 -366 5800 5644 5159 142 14 15 chr4 78892251 78893265 -105395397 + L1PA16 LINE L1 5154 6166 0 2896 130 33 10 chr4 78893265 78893780 -105394882 + L1MA4 LINE L1 5769 6295 -5 26 0 0 0 chr4 78895358 78895384 -105393278 + AT_rich Low_complexity Low_complexity 1 26 0 628 287 94 45 chr4 78895625 78895956 -105392706 - MLT1I LTR MaLR 0 409 63 877 257 13 17 chr4 78896176 78896413 -105392249 - L1ME1 LINE L1 -9 6157 5922 420 20 0 0 chr4 78896819 78896868 -105391794 + (TG)n Simple_repeat Simple_repeat 2 50 0 236 229 0 0 chr4 78897519 78897567 -105391095 - L2 LINE L2 -1 3271 3224 2269 107 0 3 chr4 78897591 78897891 -105390771 + AluSg SINE Alu 1 299 -11 873 188 80 0 chr4 78898079 78898255 -105390407 + MER3 DNA MER1_type 18 207 -2 1984 136 14 0 chr4 78898323 78898642 -105390020 - AluSx SINE Alu 0 323 1 1687 218 70 31 chr4 78898734 78899179 -105389483 + MLT1C LTR MaLR 6 467 0 257 253 21 32 chr4 78899633 78899728 -105388934 + (TATATG)n Simple_repeat Simple_repeat 2 95 0 832 219 83 0 chr4 78901183 78901375 -105387287 - MER3 DNA MER1_type -1 208 1 1106 236 86 25 chr4 78901696 78901976 -105386686 - AluJo SINE Alu -5 297 1 1236 71 47 0 chr4 78902933 78903102 -105385560 - MER20 DNA MER1_type 0 219 43 201 94 0 0 chr4 78903885 78903917 -105384745 + (GA)n Simple_repeat Simple_repeat 1 32 0 260 260 52 0 chr4 78904466 78904543 -105384119 - MIR SINE MIR -58 204 124 1571 17 0 0 chr4 78905274 78905453 -105383209 - L1PA5 LINE L1 -11 6143 5965 417 20 0 0 chr4 78906057 78906107 -105382555 + (TA)n Simple_repeat Simple_repeat 2 51 0 214 200 0 55 chr4 78906920 78906975 -105381687 + MIR3 SINE MIR 144 195 -13 184 245 61 0 chr4 78907066 78907115 -105381547 + L2 LINE L2 3221 3272 0 189 0 0 0 chr4 78907299 78907320 -105381342 + (TCTA)n Simple_repeat Simple_repeat 1 21 0 225 339 52 8 chr4 78907407 78907539 -105381123 - MIR SINE MIR -69 139 38 501 230 118 31 chr4 78908145 78908306 -105380356 - L2 LINE L2 -23 3290 3116 862 202 39 62 chr4 78909315 78909501 -105379161 + MER112 DNA MER1_type 1 181 -79 2844 116 45 2 chr4 78909501 78909948 -105378714 + L1PA16 LINE L1 5696 6161 -5 862 202 39 62 chr4 78909948 78910018 -105378644 + MER112 DNA MER1_type 181 251 -9 248 238 88 25 chr4 78910727 78910807 -105377855 - MER97a DNA MER1_type? -15 879 795 2107 113 3 3 chr4 78910900 78911191 -105377471 - AluSq SINE Alu -18 295 5 32 0 0 0 chr4 78911251 78911283 -105377379 + AT_rich Low_complexity Low_complexity 1 32 0 405 131 16 0 chr4 78911307 78911368 -105377294 + AluS SINE Alu 3 64 -254 50 65 0 0 chr4 78911373 78911465 -105377197 + AT_rich Low_complexity Low_complexity 1 92 0 1472 171 75 4 chr4 78912055 78912520 -105376142 - MER97a DNA MER1_type? -524 566 1 311 40 0 40 chr4 78912697 78912747 -105375915 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 712 280 72 21 chr4 78912928 78913164 -105375498 + MIR SINE MIR 13 260 -2 289 250 84 23 chr4 78913911 78914028 -105374634 - MIR SINE MIR -73 135 28 201 129 0 0 chr4 78914202 78914233 -105374429 + (TG)n Simple_repeat Simple_repeat 1 31 0 2200 144 47 0 chr4 78914638 78914979 -105373683 + LTR18A LTR ERVL 1 357 0 304 284 0 34 chr4 78915510 78915598 -105373064 - L2 LINE L2 -5 3267 3183 270 0 0 0 chr4 78917281 78917311 -105371351 + (T)n Simple_repeat Simple_repeat 1 30 0 303 290 37 37 chr4 78917751 78917858 -105370804 - L2 LINE L2 -10 3303 3197 1946 95 11 25 chr4 78918202 78918563 -105370099 - AluSg SINE Alu 0 357 1 182 371 151 28 chr4 78918584 78918902 -105369760 - L2 LINE L2 -548 2766 2410 201 175 0 0 chr4 78921017 78921057 -105367605 + (CAA)n Simple_repeat Simple_repeat 2 41 0 425 262 209 11 chr4 78921079 78921270 -105367392 - MIR SINE MIR -31 231 3 335 223 138 32 chr4 78921381 78921475 -105367187 - L2 LINE L2 0 3272 3169 1805 181 3 0 chr4 78921689 78922014 -105366648 + AluJb SINE Alu 1 326 0 238 257 95 0 chr4 78922035 78922109 -105366553 - L1ME4a LINE L1 -60 6061 5981 363 313 70 31 chr4 78922275 78922534 -105366128 - L1ME4a LINE L1 -340 5781 5513 242 289 10 52 chr4 78922597 78922694 -105365968 - MIR SINE MIR -50 212 120 183 311 126 7 chr4 78926328 78926463 -105362199 - L2 LINE L2 -1007 2307 2157 255 264 45 73 chr4 78926501 78926679 -105361983 - L2 LINE L2 -1272 2042 1870 189 107 0 0 chr4 78926919 78926947 -105361715 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 318 50 0 0 chr4 78926946 78926986 -105361676 + (CA)n Simple_repeat Simple_repeat 2 41 0 189 0 0 0 chr4 78927207 78927228 -105361434 + (T)n Simple_repeat Simple_repeat 1 21 0 414 302 146 38 chr4 78927338 78927550 -105361112 - MIR SINE MIR -25 237 3 39464 39 26 2 chr4 78928571 78933457 -105355205 - L1P LINE L1 -1133 5013 7 2143 105 0 30 chr4 78933602 78933906 -105354756 - AluY SINE Alu -16 295 1 2129 146 0 20 chr4 78934452 78934795 -105353867 - MER1B DNA MER1_type -1 336 1 277 271 216 15 chr4 78934850 78935049 -105353613 - L2 LINE L2 -487 2827 2589 256 313 154 51 chr4 78935922 78936117 -105352545 + LTR16C LTR ERVL 277 491 0 433 287 39 8 chr4 78936515 78936644 -105352018 - MIR SINE MIR -75 187 55 22 0 0 0 chr4 78936689 78936711 -105351951 + AT_rich Low_complexity Low_complexity 1 22 0 2525 129 20 0 chr4 78937652 78938002 -105350660 - LTR18A LTR ERVL 0 357 1 662 117 11 0 chr4 78938128 78938222 -105350440 - HERVL18 LTR ERVL -1559 4488 4394 1653 149 0 8 chr4 78938224 78938472 -105350190 - HERVL18 LTR ERVL -2468 3579 3334 2842 177 0 2 chr4 78938526 78938978 -105349684 - HERVL18 LTR ERVL -2877 3170 2720 1423 128 22 2 chr4 78938977 78939248 -105349414 - HERVL18 LTR ERVL -3595 2452 2119 * 2467 180 27 23 chr4 78939257 78939889 -105348773 - HERVL18 LTR ERVL -4237 1810 1112 2135 200 5 22 chr4 78939889 78940304 -105348358 - HERVL18 LTR ERVL -5631 416 9 2363 152 17 0 chr4 78940318 78940667 -105347995 - LTR18A LTR ERVL 0 357 3 1412 162 142 0 chr4 78941484 78941769 -105346893 + AluJo SINE Alu 1 321 0 314 298 94 60 chr4 78942290 78942672 -105345990 - L1MCc LINE L1 -5912 511 117 571 226 67 0 chr4 78942737 78942901 -105345761 + Charlie8 DNA MER1_type 61 235 -2182 294 29 0 0 chr4 78943274 78943309 -105345353 + (TG)n Simple_repeat Simple_repeat 1 35 0 329 357 0 0 chr4 78943580 78943664 -105344998 - L2 LINE L2 -29 3243 3160 21 0 0 0 chr4 78943912 78943933 -105344729 + AT_rich Low_complexity Low_complexity 1 21 0 254 227 40 13 chr4 78944035 78944110 -105344552 - MARNA DNA Mariner -199 387 311 370 313 60 43 chr4 78944123 78944356 -105344306 - MARNA DNA Mariner -196 390 154 717 174 188 0 chr4 78945236 78945380 -105343282 + FAM SINE Alu 2 172 -3 243 0 0 0 chr4 78945736 78945763 -105342899 + (T)n Simple_repeat Simple_repeat 1 27 0 26 0 0 0 chr4 78946301 78946327 -105342335 + AT_rich Low_complexity Low_complexity 1 26 0 251 286 0 0 chr4 78947515 78947578 -105341084 - L2 LINE L2 0 3272 3210 312 27 0 0 chr4 78947771 78947808 -105340854 + (CAT)n Simple_repeat Simple_repeat 1 37 0 611 255 147 0 chr4 78947837 78948021 -105340641 - MIR SINE MIR -37 225 15 251 379 39 0 chr4 78948416 78948519 -105340143 + MIR3 SINE MIR 102 208 0 2101 105 28 0 chr4 78948581 78948867 -105339795 + AluSg SINE Alu 1 294 -16 188 286 60 24 chr4 78949613 78949697 -105338965 + MIR SINE MIR 57 143 -65 22 0 0 0 chr4 78950035 78950057 -105338605 + AT_rich Low_complexity Low_complexity 1 22 0 195 42 0 0 chr4 78950596 78950620 -105338042 + (TA)n Simple_repeat Simple_repeat 1 24 0 2635 244 89 20 chr4 78950640 78951498 -105337164 - L1ME3 LINE L1 -1 6161 5166 387 0 0 0 chr4 78951498 78951541 -105337121 + (TA)n Simple_repeat Simple_repeat 1 43 0 2635 244 89 20 chr4 78951541 78952080 -105336582 - L1ME3 LINE L1 -996 5166 4666 200 275 121 22 chr4 78952356 78952447 -105336215 - MIR3 SINE MIR -21 187 88 23 0 0 0 chr4 78953911 78953934 -105334728 + AT_rich Low_complexity Low_complexity 1 23 0 2088 114 11 0 chr4 78954536 78954852 -105333810 + AluSx SINE Alu 1 319 0 308 149 0 15 chr4 78956596 78956663 -105331999 + (CA)n Simple_repeat Simple_repeat 1 66 0 248 355 9 55 chr4 78957219 78957329 -105331333 - MIR3 SINE MIR -25 183 79 189 327 64 0 chr4 78957535 78957645 -105331017 + L2 LINE L2 2800 2916 -398 267 225 0 0 chr4 78957668 78957739 -105330923 + (TA)n Simple_repeat Simple_repeat 1 71 0 1970 351 115 9 chr4 78957866 78958519 -105330143 - L1ME1 LINE L1 -10 6156 5435 195 256 0 0 chr4 78958528 78958571 -105330091 + MER5B DNA MER1_type 113 155 -23 4528 107 38 7 chr4 78958574 78959367 -105329295 - L1PA10 LINE L1 -214 5954 5141 373 227 23 23 chr4 78959369 78959457 -105329205 + MIR SINE MIR 151 238 -24 767 270 118 41 chr4 78961059 78961448 -105327214 + MLT1L LTR MaLR 9 427 -188 185 385 23 0 chr4 78962165 78962295 -105326367 - L2 LINE L2 -467 2847 2715 824 218 105 34 chr4 78962535 78962801 -105325861 + L1ME2 LINE L1 5869 6153 -11 189 213 88 50 chr4 78963002 78963082 -105325580 + MER5C DNA MER1_type 3 85 -239 678 260 26 40 chr4 78963319 78963546 -105325116 - LTR33 LTR ERVL 0 521 298 236 194 16 0 chr4 78963577 78963639 -105325023 - L1M4 LINE L1 -2180 3966 3904 501 318 118 14 chr4 78963640 78964147 -105324515 + L1M4 LINE L1 4008 4567 -1579 743 140 0 9 chr4 78964522 78964636 -105324026 + MER49 LTR ERV1 2 114 -809 1811 157 48 15 chr4 78964636 78964968 -105323694 + MER61A LTR ERV1 1 343 0 26056 102 34 17 chr4 78964968 78969260 -105319402 + MER61A-int LTR ERV1 1 5217 0 1900 179 18 9 chr4 78969260 78969600 -105319062 + MER61A LTR ERV1 1 343 0 1279 120 0 0 chr4 78969601 78969784 -105318878 + MER49 LTR ERV1 112 294 -629 1291 244 25 0 chr4 78969804 78970087 -105318575 + MER4D LTR ERV1 532 821 -82 227 98 0 115 chr4 78970221 78970282 -105318380 + L1MA4A LINE L1 6245 6298 -5 348 182 26 13 chr4 78970298 78970375 -105318287 + MER4D LTR ERV1 826 903 0 365 271 63 38 chr4 78970388 78970854 -105317808 + L1M4 LINE L1 4945 5426 -743 214 122 54 40 chr4 78970855 78970929 -105317733 + (TA)n Simple_repeat Simple_repeat 1 75 0 22 0 0 0 chr4 78971571 78971593 -105317069 + AT_rich Low_complexity Low_complexity 1 22 0 353 306 106 106 chr4 78972594 78972990 -105315672 + L2 LINE L2 2866 3261 -11 299 215 89 0 chr4 78973331 78973410 -105315252 + MER102b DNA MER1_type 59 144 -197 207 172 31 16 chr4 78973413 78973477 -105315185 + (CAAA)n Simple_repeat Simple_repeat 2 66 0 609 207 35 12 chr4 78975412 78975581 -105313081 - MER104 DNA Tc2 -2 178 6 216 0 0 0 chr4 78975691 78975715 -105312947 + (TG)n Simple_repeat Simple_repeat 2 25 0 398 322 34 14 chr4 79026807 79026953 -105261709 + MIR SINE MIR 49 197 -65 2006 119 54 0 chr4 79027412 79027690 -105260972 - AluSx SINE Alu -19 293 1 35 16 0 49 chr4 79027812 79027873 -105260789 + AT_rich Low_complexity Low_complexity 1 58 0 277 361 93 0 chr4 79028199 79028296 -105260366 - MER91A DNA MER1_type -3 193 88 * 609 305 32 37 chr4 79028276 79028466 -105260196 - MER91A DNA MER1_type -6 190 2 371 268 0 10 chr4 79028503 79028600 -105260062 + LTR67 LTR ERVL 462 557 0 22933 31 1 0 chr4 79029343 79032115 -105256547 - L1P LINE L1 -1927 4219 1446 8218 24 0 0 chr4 79032215 79033950 -105254712 + L1PA2 LINE L1 4421 6155 0 190 259 19 0 chr4 79034008 79034062 -105254600 - MIR SINE MIR -10 252 198 461 303 82 36 chr4 79034403 79035102 -105253560 + L1ME LINE L1 3437 4167 -1979 575 343 79 32 chr4 79035110 79035679 -105252983 + L1ME LINE L1 4443 5038 -1108 362 274 77 88 chr4 79035896 79036396 -105252266 + L1ME LINE L1 5259 5752 -410 227 250 69 28 chr4 79036401 79036473 -105252189 - L2 LINE L2 -47 3225 3151 315 279 95 62 chr4 79036864 79037016 -105251646 + MIR SINE MIR 6 166 -66 1969 302 147 13 chr4 79037152 79038070 -105250592 + L2 LINE L2 143 1183 -2131 182 333 97 21 chr4 79038942 79039035 -105249627 - L2 LINE L2 0 3272 3173 329 238 198 61 chr4 79039371 79039769 -105248893 + L1MD3 LINE L1 36 793 -5629 332 366 40 17 chr4 79039945 79040120 -105248542 + L1MD3 LINE L1 947 1125 -5297 867 245 102 72 chr4 79040124 79040887 -105247775 + L1MD3 LINE L1 1056 2081 -4968 423 0 0 0 chr4 79040887 79040934 -105247728 + (CA)n Simple_repeat Simple_repeat 2 48 0 867 245 102 72 chr4 79040934 79041014 -105247648 + L1MD3 LINE L1 2081 2157 -4892 5771 209 84 108 chr4 79041030 79042814 -105245848 + L1MD3 LINE L1 4474 6299 -2491 2440 159 39 2 chr4 79042814 79043255 -105245407 + L1MC1 LINE L1 5875 6331 -2 5771 209 84 108 chr4 79043255 79043732 -105244930 + L1MD3 LINE L1 6299 6786 -2004 635 134 0 164 chr4 79043732 79043903 -105244759 + FLAM_C SINE Alu 1 143 0 5771 209 84 108 chr4 79043903 79045187 -105243475 + L1MD3 LINE L1 6786 8099 -691 723 165 0 0 chr4 79045187 79045302 -105243360 + MLT1F1 LTR MaLR 5 119 -448 5771 209 84 108 chr4 79045302 79045887 -105242775 + L1MD3 LINE L1 8099 8781 -9 2127 136 0 0 chr4 79045887 79046181 -105242481 + AluSx SINE Alu 1 294 -18 296 296 210 27 chr4 79047152 79047338 -105241324 - MIR SINE MIR -36 226 7 436 246 64 70 chr4 79048016 79048187 -105240475 + MER102b DNA MER1_type 172 341 0 2391 172 98 13 chr4 79048499 79048959 -105239703 - MLT1D LTR MaLR 0 505 7 180 348 126 7 chr4 79049276 79049411 -105239251 - MIR SINE MIR -78 184 34 488 248 130 70 chr4 79049585 79050106 -105238556 - LTR33A LTR ERVL -2 521 1 312 252 206 0 chr4 79050127 79050234 -105238428 - MIR SINE MIR -10 252 124 884 243 37 14 chr4 79050475 79050693 -105237969 + MIR SINE MIR 7 229 -33 22 0 0 0 chr4 79050709 79050731 -105237931 + AT_rich Low_complexity Low_complexity 1 22 0 4345 132 6 0 chr4 79050937 79051589 -105237073 + L1PB3 LINE L1 5497 6152 -2 2605 41 0 0 chr4 79051711 79052025 -105236637 + L1PA7 LINE L1 5834 6147 -7 323 164 0 0 chr4 79052906 79052973 -105235689 + L2 LINE L2 104 170 -3144 189 323 48 0 chr4 79053099 79053161 -105235501 + L2 LINE L2 3227 3291 -22 750 217 31 0 chr4 79054139 79054300 -105234362 + MIR SINE MIR 71 236 -26 612 220 49 84 chr4 79054294 79054540 -105234122 - MIR SINE MIR -2 260 27 * 317 321 143 44 chr4 79054898 79055213 -105233449 - L2 LINE L2 -18 3295 2950 280 314 132 36 chr4 79055478 79055781 -105232881 - L2 LINE L2 -735 2579 2248 1114 322 97 25 chr4 79056107 79056706 -105231956 - L3 LINE CR1 -11 1566 925 226 354 31 0 chr4 79058813 79058878 -105229784 - L2 LINE L2 -50 3222 3156 395 310 83 21 chr4 79058915 79059060 -105229602 + MIR3 SINE MIR 42 195 -13 22 70 0 0 chr4 79060147 79060190 -105228472 + AT_rich Low_complexity Low_complexity 1 43 0 434 245 40 13 chr4 79060198 79060349 -105228313 - MER69 DNA AcHobo -158 2368 2214 460 152 80 24 chr4 79060352 79060477 -105228185 + MER53 DNA DNA 1 132 -57 659 206 25 7 chr4 79060482 79060750 -105227912 + L1MA7 LINE L1 5909 6287 -4 386 143 0 14 chr4 79060763 79060833 -105227829 + MER53 DNA DNA 121 189 0 603 223 59 20 chr4 79060841 79061043 -105227619 - MER69 DNA AcHobo -318 2208 1999 414 289 15 7 chr4 79061030 79061165 -105227497 - MER69 DNA AcHobo -658 568 433 * 777 301 70 7 chr4 79061186 79061472 -105227190 - MER69 DNA AcHobo -2222 304 1 205 208 21 31 chr4 79061589 79061685 -105226977 + CT-rich Low_complexity Low_complexity 1 95 0 390 322 59 5 chr4 79062489 79062687 -105225975 - MIR SINE MIR -26 236 20 185 333 164 44 chr4 79062821 79062980 -105225682 + MIR3 SINE MIR 13 190 -18 1598 171 9 113 chr4 79063515 79063948 -105224714 + MLT1B LTR MaLR 1 388 -2 1093 166 42 137 chr4 79064217 79064620 -105224042 - MLT1A1 LTR MaLR 0 365 1 439 242 73 68 chr4 79064650 79064869 -105223793 - L2 LINE L2 -5 3308 3089 270 200 94 0 chr4 79065369 79065454 -105223208 + L1ME4a LINE L1 6001 6093 -28 642 284 135 0 chr4 79065617 79065832 -105222830 - MIR SINE MIR -3 259 16 23 33 0 0 chr4 79065892 79065922 -105222740 + AT_rich Low_complexity Low_complexity 1 30 0 200 323 10 21 chr4 79066179 79066275 -105222387 + L2 LINE L2 3219 3313 0 2412 80 3 0 chr4 79066914 79067213 -105221449 - AluY SINE Alu -11 300 1 263 315 100 15 chr4 79067248 79067378 -105221284 - MIR3 SINE MIR -64 144 4 212 395 0 0 chr4 79067824 79067905 -105220757 + L2 LINE L2 3225 3305 -8 202 238 19 124 chr4 79068725 79068830 -105219832 - MIR SINE MIR -46 216 123 1880 129 0 4 chr4 79069997 79070289 -105218373 - AluY SINE Alu 0 310 20 2291 117 0 0 chr4 79070770 79071079 -105217583 + AluSc SINE Alu 1 309 0 279 0 0 0 chr4 79071087 79071118 -105217544 + (TC)n Simple_repeat Simple_repeat 2 32 0 260 53 26 0 chr4 79071215 79071253 -105217409 + (TG)n Simple_repeat Simple_repeat 1 39 0 384 200 164 0 chr4 79072159 79072269 -105216393 - MER3 DNA MER1_type -3 206 79 288 251 404 0 chr4 79072711 79072894 -105215768 + MIR SINE MIR 6 262 0 662 328 72 54 chr4 79073807 79073977 -105214685 + L2 LINE L2 2510 2676 -638 2443 81 3 0 chr4 79073977 79074286 -105214376 - AluY SINE Alu -1 310 1 662 328 72 54 chr4 79074286 79074575 -105214087 + L2 LINE L2 2676 2977 -337 1632 179 28 7 chr4 79074664 79074954 -105213708 - AluJb SINE Alu -16 296 1 187 340 0 0 chr4 79075111 79075161 -105213501 + L2 LINE L2 3206 3255 -17 556 88 33 0 chr4 79076427 79076518 -105212144 + GA-rich Low_complexity Low_complexity 2 95 0 464 211 141 141 chr4 79077599 79077660 -105211002 - MLT1J LTR MaLR 0 511 451 2299 101 0 13 chr4 79077660 79077967 -105210695 - AluSq SINE Alu -10 303 1 464 211 141 141 chr4 79077967 79078416 -105210246 - MLT1J LTR MaLR -59 452 1 249 246 131 8 chr4 79079785 79079915 -105208747 - LTR33 LTR ERVL -355 166 21 4104 139 20 6 chr4 79080102 79080907 -105207755 + L1MA4A LINE L1 5410 6277 -23 190 296 0 0 chr4 79081683 79081727 -105206935 + L2 LINE L2 3255 3298 -15 621 327 166 36 chr4 79081787 79082715 -105205947 - L2 LINE L2 -8 3305 2248 369 398 170 33 chr4 79083180 79083672 -105204990 - L2 LINE L2 -1064 2250 1652 2276 106 3 0 chr4 79083672 79083973 -105204689 - AluSp SINE Alu -11 302 1 369 398 170 33 chr4 79083973 79084109 -105204553 - L2 LINE L2 -1662 1652 1536 1450 221 10 44 chr4 79084495 79084902 -105203760 + MLT2C1 LTR ERVL 5 397 0 422 333 31 48 chr4 79085713 79085941 -105202721 - MIR SINE MIR -34 228 5 265 321 18 54 chr4 79086326 79086494 -105202168 - MIR SINE MIR -2 260 99 2205 100 3 3 chr4 79087441 79087731 -105200931 - AluSc SINE Alu -19 290 1 241 270 0 0 chr4 79087799 79087862 -105200800 + A-rich Low_complexity Low_complexity 1 63 0 206 174 22 0 chr4 79088395 79088441 -105200221 + CT-rich Low_complexity Low_complexity 4 50 0 25 31 0 0 chr4 79088756 79088788 -105199874 + AT_rich Low_complexity Low_complexity 1 32 0 504 312 143 44 chr4 79090066 79090521 -105198141 - MLT1K LTR MaLR -1 587 88 245 62 0 0 chr4 79091128 79091160 -105197502 - L1PA2 LINE L1 -5027 1119 1088 33874 30 1 0 chr4 79091160 79096208 -105192454 + L1PA2 LINE L1 1103 6155 0 638 216 49 0 chr4 79096246 79096408 -105192254 - Charlie4 DNA MER1_type -1733 228 59 210 342 66 13 chr4 79097533 79097614 -105191048 - L2 LINE L2 -301 2971 2896 1952 138 30 54 chr4 79097614 79097984 -105190678 + MER46B DNA MER2_type 1 236 0 210 342 66 13 chr4 79097984 79098054 -105190608 - L2 LINE L2 -376 2896 2812 25 75 0 0 chr4 79098914 79098967 -105189695 + AT_rich Low_complexity Low_complexity 1 53 0 303 336 91 0 chr4 79098980 79099090 -105189572 - L2 LINE L2 -5 3308 3189 697 208 97 0 chr4 79099709 79099863 -105188799 + AluJb SINE Alu 133 301 -11 223 281 0 0 chr4 79100911 79100968 -105187694 + L2 LINE L2 3251 3307 -6 6574 33 0 0 chr4 79101278 79102086 -105186576 + L1PA5 LINE L1 5369 6176 0 697 303 50 77 chr4 79102443 79102978 -105185684 + LTR33 LTR ERVL 1 521 0 538 229 49 170 chr4 79104017 79104305 -105184357 + MIR SINE MIR 9 261 -1 367 242 113 8 chr4 79104853 79104977 -105183685 - MER117 DNA MER1_type -47 150 14 22 0 0 0 chr4 79106551 79106573 -105182089 + AT_rich Low_complexity Low_complexity 1 22 0 463 293 26 0 chr4 79106763 79106879 -105181783 - MIR3 SINE MIR -52 156 38 508 270 66 73 chr4 79107046 79107305 -105181357 - Charlie8 DNA MER1_type -2155 262 6 181 276 81 35 chr4 79107527 79107614 -105181048 - MER5B DNA MER1_type -15 163 73 180 300 110 60 chr4 79107941 79108041 -105180621 + MIR SINE MIR 42 146 -62 24 32 0 0 chr4 79108977 79109008 -105179654 + AT_rich Low_complexity Low_complexity 1 31 0 2505 225 157 41 chr4 79111991 79112234 -105176428 + L1ME1 LINE L1 4944 5157 -1009 374 125 75 0 chr4 79112234 79112314 -105176348 - L1PA14 LINE L1 -2 6159 6074 2505 225 157 41 chr4 79112314 79113142 -105175520 + L1ME1 LINE L1 5157 6161 -5 268 207 98 0 chr4 79113378 79113460 -105175202 + L1MA7 LINE L1 6173 6262 -29 1443 220 96 63 chr4 79113836 79114327 -105174335 + L1MC4 LINE L1 7388 7894 -148 248 184 0 0 chr4 79114337 79114386 -105174276 + L1MC4 LINE L1 7986 8034 -8 3389 122 97 11 chr4 79114673 79115238 -105173424 - LTR18B LTR ERVL 0 614 1 180 77 0 0 chr4 79115326 79115352 -105173310 + (TA)n Simple_repeat Simple_repeat 1 26 0 243 0 0 0 chr4 79115982 79116009 -105172653 + (CAAAA)n Simple_repeat Simple_repeat 5 31 0 1263 174 100 44 chr4 79116029 79116161 -105172501 + L1ME2 LINE L1 5782 5905 -259 2059 137 3 0 chr4 79116161 79116453 -105172209 + AluSx SINE Alu 16 308 -4 1263 174 100 44 chr4 79116453 79116681 -105171981 + L1ME2 LINE L1 5905 6162 -2 23 33 0 0 chr4 79116815 79116845 -105171817 + AT_rich Low_complexity Low_complexity 1 30 0 719 166 108 0 chr4 79118021 79118160 -105170502 + L1MC/D LINE L1 5388 5541 -2267 356 268 174 52 chr4 79118434 79118721 -105169941 - L1M4 LINE L1 -1092 5054 4733 4680 155 32 51 chr4 79118736 79119980 -105168682 + L1PA16 LINE L1 4697 5890 -276 2927 90 18 40 chr4 79119980 79120434 -105168228 + MLT2A1 LTR ERVL 1 444 0 4680 155 32 51 chr4 79120434 79120601 -105168061 + L1PA16 LINE L1 5890 6059 -107 326 120 0 0 chr4 79120603 79120653 -105168009 + L1PA16 LINE L1 6107 6156 -10 2002 124 18 0 chr4 79121271 79121543 -105167119 + AluSc SINE Alu 6 285 -24 234 0 0 0 chr4 79121543 79121569 -105167093 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1276 159 43 43 chr4 79121916 79122174 -105166488 + AluJb SINE Alu 3 260 -52 180 0 0 0 chr4 79122204 79122224 -105166438 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 480 276 22 22 chr4 79123703 79123837 -105164825 - MER5A DNA MER1_type 0 189 56 358 287 54 36 chr4 79124367 79124461 -105164201 + MIR SINE MIR 62 162 -100 1684 86 0 9 chr4 79124461 79124682 -105163980 - AluY SINE Alu -9 302 84 358 287 54 36 chr4 79124682 79124754 -105163908 + MIR SINE MIR 162 231 -31 456 313 107 26 chr4 79124780 79125013 -105163649 + MIR SINE MIR 1 252 -10 213 211 0 0 chr4 79125028 79125085 -105163577 + CT-rich Low_complexity Low_complexity 5 61 0 260 319 59 34 chr4 79126376 79126495 -105162167 - L2 LINE L2 -8 3264 3143 319 245 28 11 chr4 79128519 79128702 -105159960 + CT-rich Low_complexity Low_complexity 1 186 0 1235 261 68 75 chr4 79128709 79129586 -105159076 - L1ME3A LINE L1 -1 6238 5356 2385 79 7 3 chr4 79129586 79129891 -105158771 - AluSq SINE Alu -6 307 2 1235 261 68 75 chr4 79129891 79130450 -105158212 - L1ME3A LINE L1 -883 5356 4795 1922 138 14 0 chr4 79130450 79130740 -105157922 + AluJo SINE Alu 3 296 -16 1235 261 68 75 chr4 79130740 79130833 -105157829 - L1ME3A LINE L1 -1444 4795 4703 1998 106 0 14 chr4 79130833 79131115 -105157547 + L1PA8A LINE L1 5842 6119 -12 1235 261 68 75 chr4 79131115 79131420 -105157242 - L1ME3A LINE L1 -1536 4703 4418 1488 256 71 67 chr4 79131431 79131545 -105157117 - L1ME3A LINE L1 -4746 1650 1538 2171 109 0 16 chr4 79131545 79131849 -105156813 + AluSq SINE Alu 1 299 -14 1488 256 71 67 chr4 79131849 79132724 -105155938 - L1ME3A LINE L1 -4858 1538 657 17004 94 10 22 chr4 79133243 79134545 -105154117 - L1P LINE L1 -2005 4141 2885 2035 140 0 23 chr4 79134545 79134853 -105153809 - AluSx SINE Alu 0 312 12 17004 94 10 22 chr4 79134853 79136129 -105152533 - L1P LINE L1 -3261 2885 1595 8775 89 7 2 chr4 79136129 79138144 -105150518 + L1PA7 LINE L1 4134 6154 0 1893 179 3 0 chr4 79138376 79138678 -105149984 + AluJo SINE Alu 2 304 -8 23 33 0 0 chr4 79138857 79138887 -105149775 + AT_rich Low_complexity Low_complexity 1 30 0 392 324 7 22 chr4 79139300 79139439 -105149223 - MIR3 SINE MIR -13 195 59 204 40 0 0 chr4 79139875 79139900 -105148762 + (TA)n Simple_repeat Simple_repeat 2 26 0 251 293 0 13 chr4 79140118 79140193 -105148469 - MLT1G1 LTR MaLR -2 593 520 240 236 0 18 chr4 79140388 79140443 -105148219 - MLT1G LTR MaLR -344 246 193 182 350 0 0 chr4 79141666 79141726 -105146936 + L2 LINE L2 3254 3313 0 285 274 0 32 chr4 79142030 79142125 -105146537 + L1MEd LINE L1 1419 1510 -4862 230 286 0 0 chr4 79142222 79142278 -105146384 + HAL1 LINE L1 1500 1555 -952 316 346 81 7 chr4 79142279 79142415 -105146247 + HAL1 LINE L1 1597 1742 -765 22 0 0 0 chr4 79142660 79142682 -105145980 + AT_rich Low_complexity Low_complexity 1 22 0 322 316 84 7 chr4 79142799 79142954 -105145708 + L1MEd LINE L1 2310 2476 -3908 296 273 130 55 chr4 79143008 79143747 -105144915 + L1MEd LINE L1 2493 3344 -3038 1698 125 113 26 chr4 79143747 79144092 -105144570 - THE1C LTR MaLR 0 375 1 296 273 130 55 chr4 79144092 79144470 -105144192 + L1MEd LINE L1 3344 3693 -2689 7998 61 118 6 chr4 79144471 79145599 -105143063 + L1P LINE L1 1 1254 -4892 373 269 143 0 chr4 79147198 79147317 -105141345 - MIR3 SINE MIR -13 195 60 26 74 0 0 chr4 79148678 79148732 -105139930 + AT_rich Low_complexity Low_complexity 1 54 0 1702 170 7 7 chr4 79148756 79149038 -105139624 - AluJb SINE Alu -30 282 1 23 33 0 0 chr4 79149832 79149862 -105138800 + AT_rich Low_complexity Low_complexity 1 30 0 890 182 25 6 chr4 79150367 79150526 -105138136 - MIR SINE MIR -21 241 80 455 152 13 0 chr4 79150528 79150607 -105138055 - MADE1 DNA Mariner 0 80 1 323 242 15 0 chr4 79150607 79150673 -105137989 - MIR SINE MIR -183 79 13 1837 181 43 11 chr4 79150956 79151332 -105137330 + MLT1B LTR MaLR 3 390 0 26 0 0 0 chr4 79151406 79151432 -105137230 + AT_rich Low_complexity Low_complexity 1 26 0 374 258 156 85 chr4 79151636 79151956 -105136706 + Charlie8 DNA MER1_type 4 324 -2093 292 276 113 38 chr4 79152058 79152297 -105136365 + L1MEd LINE L1 4326 4582 -1800 319 337 115 30 chr4 79152480 79152940 -105135722 + L1MEd LINE L1 5122 5620 -762 1328 273 125 39 chr4 79152978 79154256 -105134406 - HAL1 LINE L1 -322 2185 1 197 347 27 33 chr4 79154293 79154443 -105134219 - MIR3 SINE MIR -2 206 58 230 244 0 0 chr4 79154804 79154849 -105133813 + (TG)n Simple_repeat Simple_repeat 1 45 0 240 200 60 0 chr4 79155153 79155203 -105133459 + polypurine Low_complexity Low_complexity 5 57 0 225 0 0 0 chr4 79156160 79156185 -105132477 + (TG)n Simple_repeat Simple_repeat 2 26 0 * 384 22 0 0 chr4 79156184 79156229 -105132433 + (TA)n Simple_repeat Simple_repeat 1 45 0 337 272 95 0 chr4 79156504 79156630 -105132032 + MIR SINE MIR 12 160 -62 207 0 0 0 chr4 79157028 79157051 -105131611 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 315 0 0 0 chr4 79159295 79159330 -105129332 + (TG)n Simple_repeat Simple_repeat 2 36 0 315 321 73 0 chr4 79160585 79160694 -105127968 - MIR SINE MIR -112 150 34 231 47 0 47 chr4 79161414 79161457 -105127205 - L1PA3 LINE L1 -1 6154 6114 2454 81 3 0 chr4 79161633 79161940 -105126722 - AluSx SINE Alu -4 308 1 957 350 111 24 chr4 79162284 79163110 -105125552 - L2 LINE L2 -15 3257 2361 317 265 143 0 chr4 79163162 79163260 -105125402 - L2 LINE L2 -13 3300 3189 2676 127 102 8 chr4 79165412 79165883 -105122779 + MLT2B1 LTR ERVL 1 515 -5 1414 207 121 14 chr4 79166143 79166564 -105122098 + MLT1C LTR MaLR 1 466 -1 382 297 40 27 chr4 79166905 79167053 -105121609 - L2 LINE L2 -2 3311 3162 303 93 0 0 chr4 79167259 79167302 -105121360 + (TG)n Simple_repeat Simple_repeat 2 44 0 2248 95 0 0 chr4 79168806 79169090 -105119572 + AluY SINE Alu 19 302 -9 226 336 160 50 chr4 79169785 79169904 -105118758 - L2 LINE L2 0 3272 3141 333 255 38 102 chr4 79170082 79170239 -105118423 + L1MC4 LINE L1 6608 6754 -1288 474 354 70 22 chr4 79170746 79171102 -105117560 + L2 LINE L2 2328 2700 -614 272 278 56 46 chr4 79171322 79171430 -105117232 + L2 LINE L2 2958 3066 -206 258 313 61 15 chr4 79171507 79171638 -105117024 - L2 LINE L2 -5 3308 3172 315 348 0 0 chr4 79171694 79171786 -105116876 - L2 LINE L2 -222 3091 3000 287 265 44 14 chr4 79172158 79172308 -105116354 - MLT1H LTR MaLR -321 190 27 316 367 32 13 chr4 79172327 79172485 -105116177 + MIR3 SINE MIR 47 207 -1 572 299 90 30 chr4 79172734 79172968 -105115694 + MIR SINE MIR 2 249 -13 375 131 12 24 chr4 79173040 79173124 -105115538 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 425 320 40 63 chr4 79174185 79174337 -105114325 + MIR SINE MIR 4 149 -113 2335 102 0 0 chr4 79174337 79174641 -105114021 + AluSx SINE Alu 1 304 -8 425 320 40 63 chr4 79174641 79174741 -105113921 + MIR SINE MIR 149 250 -12 3324 145 33 31 chr4 79175105 79175688 -105112974 + L1MA7 LINE L1 5615 6201 -90 2189 43 4 0 chr4 79175688 79175946 -105112716 - AluY SINE Alu -9 302 44 3324 145 33 31 chr4 79175946 79176037 -105112625 + L1MA7 LINE L1 6201 6290 -1 2121 126 26 42 chr4 79177402 79177783 -105110879 - THE1C LTR MaLR 0 375 1 183 236 0 36 chr4 79178871 79178926 -105109736 - MIR SINE MIR -63 145 93 4945 179 17 31 chr4 79179544 79180640 -105108022 - L1MC3 LINE L1 -126 7659 6579 203 346 0 13 chr4 79180674 79180752 -105107910 + MIR3 SINE MIR 131 207 -1 24 53 0 0 chr4 79181027 79181065 -105107597 + AT_rich Low_complexity Low_complexity 1 38 0 1384 294 75 17 chr4 79181374 79181854 -105106808 + MLT1G LTR MaLR 70 577 -13 1114 287 53 9 chr4 79181871 79182209 -105106453 - LTR16C LTR ERVL -16 475 123 24 32 0 0 chr4 79182601 79182632 -105106030 + AT_rich Low_complexity Low_complexity 1 31 0 2398 93 0 0 chr4 79182719 79183019 -105105643 + AluSg SINE Alu 1 300 -10 2382 80 0 13 chr4 79183610 79183924 -105104738 + AluY SINE Alu 1 310 -1 26 0 0 0 chr4 79184897 79184923 -105103739 + AT_rich Low_complexity Low_complexity 1 26 0 2807 109 14 16 chr4 79185291 79185722 -105102940 - L1PB2 LINE L1 -13 6138 5709 207 224 0 41 chr4 79186705 79186754 -105101908 - L2 LINE L2 -10 3262 3216 1222 175 5 5 chr4 79186895 79187095 -105101567 + AluSx SINE Alu 1 200 -112 630 171 18 0 chr4 79187358 79187469 -105101193 + AluSx SINE Alu 190 302 -10 608 286 77 39 chr4 79187659 79187893 -105100769 - MIR SINE MIR -1 261 19 292 267 13 155 chr4 79188299 79188531 -105100131 + L2 LINE L2 2985 3183 -89 21 0 0 0 chr4 79188711 79188732 -105099930 + AT_rich Low_complexity Low_complexity 1 21 0 870 295 108 61 chr4 79189800 79190633 -105098029 - L2 LINE L2 -11 3302 2422 903 293 46 42 chr4 79192764 79193201 -105095461 + MLT1H LTR MaLR 11 493 -56 1658 204 80 5 chr4 79193201 79193613 -105095049 + L1MC3 LINE L1 6668 7110 -675 336 322 73 73 chr4 79193692 79193920 -105094742 + L2 LINE L2 2507 2733 -580 2272 170 15 41 chr4 79193920 79193997 -105094665 + L1PB4 LINE L1 5702 5779 -377 198 103 0 0 chr4 79193997 79194026 -105094636 + (TG)n Simple_repeat Simple_repeat 2 30 0 2272 170 15 41 chr4 79194026 79194407 -105094255 + L1PB4 LINE L1 5779 6148 -8 336 322 73 73 chr4 79194407 79194514 -105094148 + L2 LINE L2 2733 2838 -475 1959 136 7 0 chr4 79194514 79194827 -105093835 - AluSq SINE Alu 0 315 1 336 322 73 73 chr4 79194827 79195063 -105093599 + L2 LINE L2 2838 3099 -214 590 262 52 20 chr4 79195075 79195320 -105093342 - MLT1J1 LTR MaLR -72 378 125 1201 75 0 6 chr4 79195606 79195765 -105092897 + AluY SINE Alu 154 311 0 411 259 9 9 chr4 79195856 79195970 -105092692 - MLT1J LTR MaLR -236 187 64 699 350 94 23 chr4 79196215 79196775 -105091887 + L2 LINE L2 2719 3313 0 280 259 302 42 chr4 79197672 79197861 -105090801 + MIR SINE MIR 25 262 0 261 328 119 15 chr4 79198219 79198353 -105090309 - L2 LINE L2 0 3272 3125 298 316 61 26 chr4 79198517 79198631 -105090031 + L2 LINE L2 3154 3271 -1 517 289 12 35 chr4 79198707 79198880 -105089782 + MIR SINE MIR 5 173 -89 445 177 13 0 chr4 79198883 79198961 -105089701 - Tigger7 DNA MER2_type -8 2479 2401 1053 184 63 5 chr4 79198961 79199168 -105089494 - Tigger3(Golem) DNA MER2_type 0 3029 2811 720 208 110 0 chr4 79199274 79199428 -105089234 - Tigger7 DNA MER2_type -534 171 1 391 286 77 12 chr4 79199778 79199946 -105088716 - MIR SINE MIR 0 262 84 352 341 98 24 chr4 79200174 79200461 -105088201 - L3b LINE CR1 -26 1557 1250 488 136 45 18 chr4 79200461 79200571 -105088091 - MER33 DNA MER1_type 0 324 212 1472 200 78 80 chr4 79200577 79201062 -105087600 - MLT1D LTR MaLR -21 484 1 375 175 277 7 chr4 79201062 79201199 -105087463 - MER33 DNA MER1_type -102 222 49 2868 218 24 23 chr4 79201199 79201988 -105086674 + L1 LINE L1 2515 3304 -2842 * 15625 143 13 99 chr4 79201985 79205724 -105082938 + L1PA7 LINE L1 1 3419 -2727 3384 129 112 16 chr4 79205724 79206687 -105081975 - MER11A LTR ERVK -11 1255 4 13768 98 3 2 chr4 79206687 79209422 -105079240 + L1PA7 LINE L1 3416 6154 0 4345 201 12 7 chr4 79209422 79210413 -105078249 + L1 LINE L1 3293 4288 -1858 1102 228 9 12 chr4 79210397 79210722 -105077940 + L1 LINE L1 4787 5110 -1036 * 378 326 136 53 chr4 79211083 79211339 -105077323 - L2 LINE L2 0 3272 3039 2531 95 46 0 chr4 79211339 79211687 -105076975 + THE1B LTR MaLR 1 364 0 378 326 136 53 chr4 79211687 79212062 -105076600 - L2 LINE L2 -233 3039 2593 1348 270 151 6 chr4 79212075 79212619 -105076043 + L2 LINE L2 2453 3073 -240 2059 271 90 41 chr4 79212637 79213294 -105075368 - L2 LINE L2 -304 3009 2310 1592 202 14 19 chr4 79213294 79213661 -105075001 - MLT1A1 LTR MaLR 0 365 1 2059 271 90 41 chr4 79213661 79213804 -105074858 - L2 LINE L2 -1003 2310 2175 186 103 0 0 chr4 79214603 79214632 -105074030 + (CACCAT)n Simple_repeat Simple_repeat 1 29 0 414 291 48 94 chr4 79215184 79215493 -105073169 - L2 LINE L2 -94 3219 2925 718 289 9 0 chr4 79215521 79215739 -105072923 + L1ME1 LINE L1 5942 6161 -5 277 216 60 69 chr4 79215973 79216089 -105072573 + MIR SINE MIR 93 207 -55 225 0 0 0 chr4 79216497 79216522 -105072140 + (A)n Simple_repeat Simple_repeat 1 25 0 215 128 0 64 chr4 79216562 79216609 -105072053 + (TTTTC)n Simple_repeat Simple_repeat 4 47 0 188 328 0 15 chr4 79217709 79217776 -105070886 - MIR SINE MIR -98 164 99 2221 117 23 47 chr4 79221686 79222070 -105066592 - THE1C LTR MaLR 0 375 1 252 257 0 0 chr4 79223823 79223893 -105064769 + GA-rich Low_complexity Low_complexity 4 73 0 1308 177 17 0 chr4 79223995 79224227 -105064435 + MER46A DNA MER2_type 1 236 0 407 238 41 22 chr4 79224874 79225009 -105063653 + MIR SINE MIR 69 252 -10 301 314 82 24 chr4 79225024 79225267 -105063395 - L1ME LINE L1 -429 5692 5432 1730 169 7 7 chr4 79225267 79225551 -105063111 + AluJo SINE Alu 1 284 -28 301 314 82 24 chr4 79225551 79225562 -105063100 - L1ME LINE L1 -689 5432 5423 342 0 0 0 chr4 79225585 79225623 -105063039 + (CA)n Simple_repeat Simple_repeat 1 38 0 234 0 0 0 chr4 79225871 79225897 -105062765 + (TC)n Simple_repeat Simple_repeat 1 26 0 211 387 0 0 chr4 79226011 79226086 -105062576 - MER5A DNA MER1_type -114 75 1 269 370 58 0 chr4 79226364 79226502 -105062160 - ERVL LTR ERVL -4113 1651 1506 263 385 56 33 chr4 79226520 79227510 -105061152 - ERVL LTR ERVL -3624 1372 361 272 323 30 0 chr4 79228015 79228114 -105060548 - LTR16C LTR ERVL -238 253 152 1992 135 52 19 chr4 79228212 79228575 -105060087 - THE1C LTR MaLR 0 375 1 9614 110 36 18 chr4 79228578 79230120 -105058542 - THE1C-int LTR MaLR -5 1575 6 1897 143 55 22 chr4 79230124 79230487 -105058175 - THE1C LTR MaLR 0 375 1 371 305 72 34 chr4 79231862 79232098 -105056564 + L2 LINE L2 2835 3079 -193 809 78 0 0 chr4 79232386 79232489 -105056173 + U6 snRNA snRNA 1 103 -4 22 35 0 0 chr4 79232496 79232525 -105056137 + AT_rich Low_complexity Low_complexity 1 29 0 2067 151 3 0 chr4 79233053 79233364 -105055298 + AluSx SINE Alu 1 312 0 2422 105 0 0 chr4 79233504 79233817 -105054845 + AluSp SINE Alu 1 313 0 383 252 8 25 chr4 79233877 79233996 -105054666 - MLT1H LTR MaLR 0 549 433 218 300 99 73 chr4 79234339 79234572 -105054090 - MIR SINE MIR -19 243 5 24 0 0 0 chr4 79234979 79235003 -105053659 + AT_rich Low_complexity Low_complexity 1 24 0 1479 196 120 17 chr4 79235454 79235733 -105052929 + MLT1C LTR MaLR 6 344 -123 2797 89 11 0 chr4 79235733 79236104 -105052558 + THE1C LTR MaLR 1 375 0 1479 196 120 17 chr4 79236104 79236242 -105052420 + MLT1C LTR MaLR 344 466 -1 442 290 11 0 chr4 79236352 79236445 -105052217 + L2 LINE L2 3179 3272 0 195 239 0 43 chr4 79237452 79237498 -105051164 - L2 LINE L2 -33 3280 3237 669 149 0 0 chr4 79237858 79237965 -105050697 - AluSg/x SINE Alu -4 308 202 675 281 102 40 chr4 79237999 79238351 -105050311 + L2 LINE L2 2920 3293 -20 1904 174 0 0 chr4 79238471 79238769 -105049893 - AluJb SINE Alu -14 298 1 279 267 27 13 chr4 79240276 79240351 -105048311 + MER5A DNA MER1_type 56 131 -58 2545 149 28 65 chr4 79240708 79241280 -105047382 + L1MB2 LINE L1 5616 6166 -5 777 163 0 39 chr4 79246596 79246725 -105041937 - FLAM_C SINE Alu -7 126 3 216 67 0 0 chr4 79246754 79246784 -105041878 + (CA)n Simple_repeat Simple_repeat 1 30 0 1021 350 34 20 chr4 79247821 79248655 -105040007 + L1MEc LINE L1 46 890 -5506 766 157 8 8 chr4 79248655 79248776 -105039886 + FLAM_C SINE Alu 3 123 -20 212 0 36 0 chr4 79248782 79248810 -105039852 + (CAA)n Simple_repeat Simple_repeat 2 30 0 301 235 226 12 chr4 79248810 79249053 -105039609 + L1MEc LINE L1 879 1173 -5223 3307 132 27 11 chr4 79249064 79249624 -105039038 + L1PA14 LINE L1 5592 6160 -1 495 248 108 77 chr4 79249673 79250153 -105038509 + L1MEc LINE L1 1265 1759 -4637 417 271 75 0 chr4 79250254 79250387 -105038275 + MIR SINE MIR 120 262 0 761 231 115 0 chr4 79250959 79251141 -105037521 + MIR SINE MIR 3 205 -57 282 238 58 13 chr4 79253059 79253177 -105035485 - L1MC4 LINE L1 0 8042 7884 242 228 0 0 chr4 79253222 79253279 -105035383 + (TA)n Simple_repeat Simple_repeat 2 58 0 2065 188 146 20 chr4 79253399 79253953 -105034709 + Charlie1a DNA MER1_type 1 624 -831 2473 177 72 32 chr4 79253977 79254632 -105034030 + Charlie1a DNA MER1_type 774 1454 -1 28 29 0 0 chr4 79254974 79255009 -105033653 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 79255349 79255370 -105033292 + AT_rich Low_complexity Low_complexity 1 21 0 214 274 167 0 chr4 79256647 79256731 -105031931 + L2 LINE L2 3005 3102 -211 485 323 117 0 chr4 79256784 79257007 -105031655 + MIR SINE MIR 3 251 -11 387 324 29 25 chr4 79257591 79257835 -105030827 + L1PA15-16 LINE L1 1309 1553 -5296 11756 211 31 20 chr4 79257837 79260498 -105028164 + L1PB4 LINE L1 1351 3982 -2877 1987 113 99 41 chr4 79260498 79260842 -105027820 + THE1B LTR MaLR 1 364 0 11756 211 31 20 chr4 79260842 79261270 -105027392 + L1PB4 LINE L1 3982 4404 -2455 2595 109 5 8 chr4 79261270 79261646 -105027016 - THE1C LTR MaLR 0 375 1 11756 211 31 20 chr4 79261646 79263924 -105024738 + L1PB4 LINE L1 4404 6849 -10 21 82 0 0 chr4 79263992 79264041 -105024621 + AT_rich Low_complexity Low_complexity 1 49 0 2086 56 4 0 chr4 79264086 79264352 -105024310 + L1PA7 LINE L1 5887 6153 -1 654 303 58 60 chr4 79265035 79265587 -105023075 - L2 LINE L2 -4 3268 2740 508 254 198 13 chr4 79266999 79267223 -105021439 + MIR SINE MIR 3 261 -1 338 331 79 11 chr4 79268721 79268899 -105019763 - MIR SINE MIR 0 262 73 953 290 82 35 chr4 79268901 79269267 -105019395 - MLT1J2 LTR MaLR -67 383 1 262 204 0 0 chr4 79269427 79269476 -105019186 - L2 LINE L2 0 3272 3224 195 219 0 24 chr4 79269442 79269483 -105019179 - MIR SINE MIR -9 253 214 * 504 236 64 0 chr4 79269483 79269593 -105019069 - L2 LINE L2 0 3272 3156 195 250 192 0 chr4 79269770 79269822 -105018840 + L2 LINE L2 3178 3239 -33 23 0 0 0 chr4 79270099 79270122 -105018540 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 79270371 79270392 -105018270 + AT_rich Low_complexity Low_complexity 1 21 0 1233 112 0 16 chr4 79270499 79270687 -105017975 + L1PA13 LINE L1 5976 6160 -3 1462 157 0 0 chr4 79271823 79272058 -105016604 + L1PA15 LINE L1 5924 6158 -7 246 137 0 0 chr4 79272137 79272188 -105016474 - LTR66 LTR ERVL -165 445 395 * 249 128 0 0 chr4 79272154 79272201 -105016461 + LTR66 LTR ERVL 395 441 -169 629 263 170 17 chr4 79272263 79272630 -105016032 - LTR33 LTR ERVL -2 519 71 192 364 93 16 chr4 79272964 79273093 -105015569 - L2 LINE L2 0 3272 3134 685 125 42 0 chr4 79273220 79273340 -105015322 + L1MB1 LINE L1 6043 6167 -1 180 0 0 0 chr4 79275447 79275467 -105013195 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 26 74 0 0 chr4 79275502 79275556 -105013106 + AT_rich Low_complexity Low_complexity 1 54 0 385 258 82 90 chr4 79275577 79275679 -105012983 - MIR SINE MIR -12 250 149 2460 64 0 0 chr4 79275679 79275991 -105012671 - L1PB1 LINE L1 0 6151 5840 385 258 82 90 chr4 79275991 79276121 -105012541 - MIR SINE MIR -113 149 20 319 217 17 58 chr4 79276461 79276581 -105012081 + MER113 DNA MER1_type? 6 120 -401 189 0 0 0 chr4 79276796 79276817 -105011845 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 187 292 0 21 chr4 79276819 79276867 -105011795 - L2 LINE L2 -15 3298 3252 466 339 94 24 chr4 79277530 79277913 -105010749 + L2 LINE L2 2826 3235 -37 526 298 29 42 chr4 79278036 79278238 -105010424 - MIR SINE MIR -27 235 34 187 254 109 0 chr4 79278539 79278594 -105010068 - L3 LINE CR1 -304 1273 1213 2277 117 7 0 chr4 79279106 79279415 -105009247 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr4 79279778 79279800 -105008862 + AT_rich Low_complexity Low_complexity 1 22 0 306 106 0 0 chr4 79279890 79279937 -105008725 + (CA)n Simple_repeat Simple_repeat 2 48 0 24 32 0 0 chr4 79280459 79280490 -105008172 + AT_rich Low_complexity Low_complexity 1 31 0 263 274 217 19 chr4 79280631 79280737 -105007925 - MIR3 SINE MIR -39 169 43 862 261 83 9 chr4 79281560 79281778 -105006884 - MIR SINE MIR -23 239 6 22 0 0 0 chr4 79282246 79282268 -105006394 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr4 79282292 79282328 -105006334 + AT_rich Low_complexity Low_complexity 1 36 0 352 276 122 70 chr4 79282477 79282633 -105006029 - MIR3 SINE MIR -19 189 26 22188 118 9 158 chr4 79283991 79287214 -105001448 + L1P LINE L1 10 2354 -3792 1214 158 53 0 chr4 79287214 79287404 -105001258 + AluSx SINE Alu 1 200 -112 22188 118 9 158 chr4 79287404 79289276 -104999386 + L1P LINE L1 2354 4504 -1642 6823 60 7 14 chr4 79289276 79290283 -104998379 + L1PA7 LINE L1 5154 6153 -1 2191 116 10 3 chr4 79291117 79291419 -104997243 - AluSx SINE Alu -8 304 1 441 255 117 7 chr4 79291515 79291660 -104997002 - MIR SINE MIR -89 173 13 2387 147 8 5 chr4 79292674 79293061 -104995601 - MLT1B LTR MaLR -2 388 1 5085 138 22 6 chr4 79293255 79294090 -104994572 - L1PB3 LINE L1 0 6154 5307 10064 195 20 8 chr4 79294764 79297132 -104991530 + L1MA4A LINE L1 2675 5073 -1775 * 42301 36 21 2 chr4 79297131 79303162 -104985500 + L1PA2 LINE L1 4 6152 -3 5553 155 29 14 chr4 79303158 79305078 -104983584 + L1MA4A LINE L1 5060 7002 -3 * 261 306 0 0 chr4 79305074 79305172 -104983490 + L1ME LINE L1 5602 5699 -422 * 267 137 0 0 chr4 79305216 79305267 -104983395 + L1MB7 LINE L1 6133 6183 -1 356 307 76 64 chr4 79305550 79306114 -104982548 - L1MEd LINE L1 -4976 1143 573 2070 147 0 0 chr4 79306946 79307246 -104981416 + AluSg SINE Alu 1 300 -10 276 30 0 0 chr4 79307261 79307294 -104981368 + (CA)n Simple_repeat Simple_repeat 2 34 0 1083 169 0 0 chr4 79307294 79307472 -104981190 + AluSg/x SINE Alu 130 307 -3 253 328 55 8 chr4 79307473 79307601 -104981061 + L2 LINE L2 2700 2833 -481 268 274 107 0 chr4 79307671 79307755 -104980907 + MLT1J LTR MaLR 237 329 -182 525 333 61 23 chr4 79307892 79308156 -104980506 + L2 LINE L2 2996 3269 -3 198 167 0 0 chr4 79309488 79309524 -104979138 + (CA)n Simple_repeat Simple_repeat 2 37 0 241 280 107 0 chr4 79311554 79311629 -104977033 - MIR SINE MIR -115 147 65 1505 184 103 25 chr4 79311862 79312221 -104976441 - MLT1B LTR MaLR 0 390 4 27 0 0 0 chr4 79312279 79312306 -104976356 + AT_rich Low_complexity Low_complexity 1 27 0 5485 47 1 0 chr4 79312306 79312973 -104975689 - L1PA5 LINE L1 -6 6148 5481 4238 38 1 0 chr4 79312973 79313595 -104975067 + L1PA5 LINE L1 4864 5486 -668 701 260 191 28 chr4 79314309 79314628 -104974034 + L2 LINE L2 2916 3286 -27 267 31 0 0 chr4 79314631 79314663 -104973999 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 258 259 111 0 chr4 79314767 79314848 -104973814 + MIR3 SINE MIR 108 197 -11 762 274 36 9 chr4 79316758 79316981 -104971681 + MIR SINE MIR 13 241 -21 24 32 0 0 chr4 79316984 79317015 -104971647 + AT_rich Low_complexity Low_complexity 1 31 0 2053 118 35 0 chr4 79317024 79317313 -104971349 + AluSx SINE Alu 1 299 -13 349 266 10 41 chr4 79318142 79318253 -104970409 + MIR SINE MIR 24 130 -78 186 43 0 0 chr4 79319577 79319600 -104969062 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 5692 112 2 9 chr4 79319636 79320790 -104967872 - L1PA16 LINE L1 -10 6807 5638 616 213 64 0 chr4 79320897 79321038 -104967624 - L1PA16 LINE L1 -1162 5635 5486 860 199 152 0 chr4 79321687 79321878 -104966784 + MER58A DNA MER1_type 1 220 -4 224 315 0 22 chr4 79322671 79322763 -104965899 + CT-rich Low_complexity Low_complexity 4 93 0 429 295 36 0 chr4 79325312 79325424 -104963238 - L2 LINE L2 0 3313 3198 548 204 9 0 chr4 79325586 79325694 -104962968 + MER63 DNA MER1_type 678 786 -276 184 114 68 0 chr4 79325808 79325852 -104962810 + T-rich Low_complexity Low_complexity 5 51 0 397 294 25 0 chr4 79326795 79326914 -104961748 + MIR SINE MIR 70 191 -71 3869 204 46 14 chr4 79328617 79330438 -104958224 - L1MB8 LINE L1 -55 6123 4258 1042 231 23 23 chr4 79330439 79330699 -104957963 + MER76 LTR ERV 1 260 -428 4388 232 50 21 chr4 79330814 79331214 -104957448 - L1MB8 LINE L1 -1887 4259 3872 1960 166 0 7 chr4 79331214 79331529 -104957133 - AluSx SINE Alu 0 312 1 4388 232 50 21 chr4 79331529 79332613 -104956049 - L1MB8 LINE L1 -2274 3872 2731 750 88 21 5 chr4 79332613 79332747 -104955915 - MSTA LTR MaLR 0 428 315 7636 222 17 10 chr4 79332747 79334754 -104953908 - L1PA16 LINE L1 -1338 5459 3439 1734 290 72 33 chr4 79334860 79336075 -104952587 + L1M2 LINE L1 81 1682 -5527 1542 185 3 35 chr4 79336175 79336462 -104952200 - AluJb SINE Alu -34 278 1 222 241 0 37 chr4 79336637 79336691 -104951971 - L2 LINE L2 -1 3312 3261 9805 93 5 1 chr4 79337565 79339020 -104949642 + L1P LINE L1 1426 2885 -3261 3929 255 44 15 chr4 79339136 79341080 -104947582 - L1PA16 LINE L1 -4367 2430 1 346 271 100 44 chr4 79341080 79341251 -104947411 - L1M4c LINE L1 -4037 2922 2762 8282 65 8 5 chr4 79341251 79342319 -104946343 - MER11C LTR ERVK 0 1071 1 346 271 100 44 chr4 79342319 79342582 -104946080 - L1M4c LINE L1 -4197 2762 2495 * 1170 257 158 34 chr4 79342578 79343444 -104945218 - L1M4c LINE L1 -4753 2206 1216 4026 214 53 14 chr4 79343604 79344546 -104944116 + L1PA8A LINE L1 1 979 -4896 1222 75 7 0 chr4 79344546 79344693 -104943969 - AluSp SINE Alu -165 148 1 20048 130 16 5 chr4 79344693 79345687 -104942975 + L1PA8A LINE L1 2148 3130 -3316 2170 92 0 36 chr4 79345687 79345992 -104942670 + AluY SINE Alu 1 294 -17 20048 130 16 5 chr4 79345992 79349058 -104939604 + L1PA8A LINE L1 3130 6243 -203 296 309 7 36 chr4 79349169 79349308 -104939354 - L1M4c LINE L1 -5844 1011 877 371 276 51 20 chr4 79349549 79349745 -104938917 - L1M4c LINE L1 -6647 212 11 403 278 139 0 chr4 79349902 79350017 -104938645 + L2 LINE L2 3163 3293 -20 23 0 0 0 chr4 79350491 79350514 -104938148 + AT_rich Low_complexity Low_complexity 1 23 0 1666 181 17 32 chr4 79351023 79351296 -104937366 - MLT1A1 LTR MaLR 0 365 97 1049 201 92 58 chr4 79351296 79351675 -104936987 - MSTD LTR MaLR 0 396 5 1666 181 17 32 chr4 79351675 79351749 -104936913 - MLT1A1 LTR MaLR -268 97 23 232 375 0 0 chr4 79353223 79353295 -104935367 - MIR SINE MIR -142 120 49 298 261 11 57 chr4 79354307 79354395 -104934267 + Zaphod DNA AcHobo 11 94 -3937 363 271 10 0 chr4 79354983 79355079 -104933583 + Zaphod DNA AcHobo 3935 4031 0 275 269 87 29 chr4 79355119 79355223 -104933439 + L2 LINE L2 3204 3313 0 507 243 41 82 chr4 79356385 79356628 -104932034 + MLT1L LTR MaLR 15 247 -368 835 289 154 30 chr4 79356730 79357628 -104931034 + L2 LINE L2 2246 3313 0 466 341 155 29 chr4 79358180 79358599 -104930063 - L3 LINE CR1 -644 933 462 2290 129 28 6 chr4 79358789 79359145 -104929517 + THE1B LTR MaLR 1 364 0 642 264 63 42 chr4 79359232 79359471 -104929191 - L2 LINE L2 -782 2532 2289 1571 241 38 83 chr4 79359754 79359828 -104928834 - MLT1H1 LTR MaLR -4 551 475 189 74 0 0 chr4 79359828 79359855 -104928807 + (TGG)n Simple_repeat Simple_repeat 3 29 0 1571 241 38 83 chr4 79359855 79360357 -104928305 - MLT1H1 LTR MaLR -80 475 1 414 285 80 15 chr4 79360360 79360497 -104928165 + MIR SINE MIR 7 152 -110 2506 83 0 6 chr4 79360976 79361289 -104927373 - AluSq SINE Alu 0 313 3 2038 110 0 50 chr4 79361700 79362061 -104926601 + AluSq SINE Alu 1 346 0 435 288 51 82 chr4 79362335 79362592 -104926070 + MIR SINE MIR 2 250 -12 1330 167 78 0 chr4 79363303 79363548 -104925114 + AluJo SINE Alu 1 264 -48 449 198 27 27 chr4 79365094 79365395 -104923267 + (CA)n Simple_repeat Simple_repeat 1 301 0 822 201 10 25 chr4 79366375 79366574 -104922088 + MLT1B LTR MaLR 195 390 0 1843 123 4 0 chr4 79366682 79366934 -104921728 + AluSx SINE Alu 46 298 -14 345 339 71 0 chr4 79367220 79367332 -104921330 - L2 LINE L2 -17 3255 3136 204 158 0 0 chr4 79369434 79369472 -104919190 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 239 324 101 49 chr4 79369605 79369961 -104918701 - L2 LINE L2 -172 3100 2720 22 56 0 0 chr4 79370148 79370184 -104918478 + AT_rich Low_complexity Low_complexity 1 36 0 662 318 27 27 chr4 79370386 79370606 -104918056 + MIR SINE MIR 2 221 -41 1078 168 40 29 chr4 79370609 79370883 -104917779 + L1MC3 LINE L1 7507 7783 -2 304 287 128 0 chr4 79370973 79371067 -104917595 + L2 LINE L2 3207 3312 -1 180 83 62 21 chr4 79371148 79371196 -104917466 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 2868 140 12 19 chr4 79371814 79372301 -104916361 - L1PA16 LINE L1 0 6166 5683 204 231 264 0 chr4 79372432 79372523 -104916139 - MIR3 SINE MIR -2 206 92 227 343 105 24 chr4 79372807 79373139 -104915523 + L2 LINE L2 1784 2142 -1172 660 234 15 0 chr4 79373438 79373575 -104915087 + MIR SINE MIR 114 252 -10 219 389 114 7 chr4 79373597 79373746 -104914916 + L2 LINE L2 3104 3268 -4 476 346 33 16 chr4 79375109 79375291 -104913371 - MIR3 SINE MIR -8 200 16 238 273 55 55 chr4 79377024 79377134 -104911528 + MIR SINE MIR 76 185 -77 577 277 82 0 chr4 79379041 79379200 -104909462 - MIR SINE MIR -12 250 79 384 77 0 0 chr4 79380092 79380144 -104908518 + (CA)n Simple_repeat Simple_repeat 2 53 0 224 222 19 0 chr4 79381374 79381428 -104907234 + G-rich Low_complexity Low_complexity 3 57 0 411 273 22 22 chr4 79382516 79382655 -104906007 - MIR SINE MIR -67 195 57 226 268 159 14 chr4 79382694 79382832 -104905830 - HAL1b LINE L1 -7 1341 1184 385 232 171 43 chr4 79382848 79383012 -104905650 - MIR SINE MIR 0 262 78 186 299 48 128 chr4 79383394 79383645 -104905017 - L2 LINE L2 -78 3194 2964 541 308 56 28 chr4 79383666 79383916 -104904746 + LTR33 LTR ERVL 261 517 -4 204 330 124 21 chr4 79384869 79384966 -104903696 - L2 LINE L2 -54 3218 3112 2042 82 38 10 chr4 79385282 79385575 -104903087 - L1PA10 LINE L1 -1 6167 5867 241 263 145 0 chr4 79385658 79385734 -104902928 - MIR3 SINE MIR -22 186 100 330 316 139 42 chr4 79387581 79387818 -104900844 + MIR SINE MIR 3 262 0 182 236 36 36 chr4 79389904 79389959 -104898703 + L2 LINE L2 3255 3309 -4 1978 118 32 51 chr4 79390792 79391105 -104897557 - AluSq SINE Alu -6 307 1 321 258 144 0 chr4 79391916 79392013 -104896649 - MIR SINE MIR -62 200 90 697 179 0 0 chr4 79392427 79392533 -104896129 + FLAM_A SINE Alu 1 106 -36 644 259 18 12 chr4 79392802 79392968 -104895694 - MIR SINE MIR -79 183 17 235 235 74 12 chr4 79393220 79393301 -104895361 + L3 LINE CR1 1315 1400 -177 610 229 107 48 chr4 79393301 79393572 -104895090 - MLT1K LTR MaLR 0 588 302 225 320 19 48 chr4 79393623 79393726 -104894936 - L2 LINE L2 -213 3059 2960 690 218 55 40 chr4 79394270 79394472 -104894190 - MER3 DNA MER1_type -4 205 1 329 204 0 21 chr4 79394826 79394919 -104893743 + GA-rich Low_complexity Low_complexity 2 92 0 2134 141 5 30 chr4 79397403 79397772 -104890890 - MER46B DNA MER2_type -1 235 1 2854 67 3 13 chr4 79398170 79398556 -104890106 - L1PA6 LINE L1 0 6154 5773 3090 197 54 23 chr4 79398566 79399301 -104889361 - Tigger6a DNA MER2_type -3 1080 323 195 265 206 0 chr4 79399334 79399402 -104889260 + L2 LINE L2 3186 3267 -5 1749 178 3 0 chr4 79399410 79399725 -104888937 - Tigger6a DNA MER2_type -766 317 2 305 231 129 95 chr4 79399950 79400097 -104888565 + MIR SINE MIR 99 250 -12 216 274 97 0 chr4 79402284 79402346 -104886316 - L2 LINE L2 0 3313 3246 257 267 168 0 chr4 79402478 79402579 -104886083 - MIR SINE MIR -8 254 137 261 208 69 0 chr4 79402800 79402872 -104885790 + HsTC2 DNA Tc2 1 77 -1821 871 203 5 39 chr4 79404571 79404778 -104883884 - Tigger6a DNA MER2_type -555 528 329 212 282 149 69 chr4 79405893 79406081 -104882581 + MIR SINE MIR 5 207 -55 197 346 25 49 chr4 79406079 79406160 -104882502 - L3b LINE CR1 -37 1546 1468 * 576 305 59 0 chr4 79406187 79406374 -104882288 + MIR SINE MIR 37 234 -28 1955 161 0 0 chr4 79407066 79407370 -104881292 + AluJo SINE Alu 3 306 -6 248 290 130 14 chr4 79407401 79407539 -104881123 + MIR3 SINE MIR 55 208 0 1256 136 5 0 chr4 79407633 79407839 -104880823 - Tigger1 DNA MER2_type 0 2418 2212 285 221 0 15 chr4 79407837 79407905 -104880757 - Tigger1 DNA MER2_type -2351 67 1 * 410 248 19 0 chr4 79408110 79408215 -104880447 + MIR SINE MIR 156 262 0 201 268 181 47 chr4 79408261 79408388 -104880274 - MIR SINE MIR -19 243 100 246 182 76 15 chr4 79408700 79408766 -104879896 - MLT1K LTR MaLR -8 580 511 249 33 0 0 chr4 79409069 79409099 -104879563 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 378 0 0 0 chr4 79409098 79409140 -104879522 + (CA)n Simple_repeat Simple_repeat 1 42 0 212 355 97 8 chr4 79410240 79410364 -104878298 - MIR SINE MIR -127 135 1 214 309 72 79 chr4 79410978 79411130 -104877532 - MIR SINE MIR -61 201 51 291 303 45 0 chr4 79412386 79412477 -104876185 - MIR SINE MIR -56 152 66 226 299 82 41 chr4 79412582 79412679 -104875983 + MIR SINE MIR 5 105 -157 402 277 22 60 chr4 79413002 79413186 -104875476 + MER69A DNA AcHobo 1 177 0 297 286 111 8 chr4 79413766 79413892 -104874770 - MIR SINE MIR -14 248 110 206 176 20 0 chr4 79413967 79414018 -104874644 + GA-rich Low_complexity Low_complexity 2 53 0 556 250 174 0 chr4 79414147 79414331 -104874331 + MIR SINE MIR 47 262 0 1710 194 10 0 chr4 79414397 79414691 -104873971 + AluSx SINE Alu 1 297 -15 295 218 26 51 chr4 79414781 79414859 -104873803 - L2 LINE L2 -46 3226 3151 911 217 59 0 chr4 79417116 79417319 -104871343 + MER20 DNA MER1_type 2 216 -3 499 262 103 33 chr4 79417505 79417777 -104870885 - L1ME3A LINE L1 -231 5939 5654 345 154 183 0 chr4 79417839 79417943 -104870719 + L1ME4a LINE L1 5998 6120 -1 22 35 0 0 chr4 79418288 79418317 -104870345 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 79418406 79418427 -104870235 + AT_rich Low_complexity Low_complexity 1 21 0 316 331 64 19 chr4 79420994 79421151 -104867511 - MIR3 SINE MIR -23 185 22 230 300 156 11 chr4 79422402 79422492 -104866170 - MIR SINE MIR -2 260 158 910 282 117 30 chr4 79422492 79422948 -104865714 + MLT1J LTR MaLR 1 502 -9 332 288 14 0 chr4 79422990 79423063 -104865599 - MIR SINE MIR -181 81 8 319 381 142 22 chr4 79423150 79423418 -104865244 + L2 LINE L2 2898 3197 -75 951 237 18 5 chr4 79423419 79423638 -104865024 + L1MEc LINE L1 490 711 -5685 2354 248 70 31 chr4 79423655 79424594 -104864068 + L1MEc LINE L1 793 1768 -4628 * 6008 48 8 1 chr4 79424587 79425737 -104862925 + L1PA6 LINE L1 4840 5993 -161 305 173 0 0 chr4 79425837 79425889 -104862773 + Alu SINE Alu 246 297 -5 1978 103 22 0 chr4 79425891 79426164 -104862498 + AluSx SINE Alu 1 279 -33 426 20 0 0 chr4 79426164 79426215 -104862447 + (CATA)n Simple_repeat Simple_repeat 1 51 0 21 0 0 0 chr4 79426465 79426486 -104862176 + AT_rich Low_complexity Low_complexity 1 21 0 12714 104 8 38 chr4 79426897 79429121 -104859541 + L1P3 LINE L1 9 2234 -4227 786 301 38 13 chr4 79429230 79429469 -104859193 + MIR SINE MIR 18 262 0 244 282 47 24 chr4 79429607 79429692 -104858970 - MER5A DNA MER1_type -34 155 69 697 279 60 15 chr4 79429989 79430254 -104858408 - L1MC/D LINE L1 -2193 5615 5339 1937 142 13 82 chr4 79431462 79431666 -104856996 + MLT2D LTR ERVL 2 168 -246 2174 117 0 16 chr4 79431666 79431982 -104856680 + AluSx SINE Alu 1 311 -1 1937 142 13 82 chr4 79431982 79432165 -104856497 + MLT2D LTR ERVL 168 362 -52 4347 245 47 42 chr4 79432177 79433929 -104854733 + L1PB4 LINE L1 9 1751 -5833 2539 113 3 19 chr4 79433929 79434299 -104854363 - THE1B LTR MaLR 0 364 1 4347 245 47 42 chr4 79434299 79435691 -104852971 + L1PB4 LINE L1 1751 4155 -3429 574 224 6 62 chr4 79435719 79435880 -104852782 + L1MA10 LINE L1 6169 6320 -14 221 260 0 0 chr4 79436023 79436073 -104852589 + (TATATG)n Simple_repeat Simple_repeat 3 52 0 380 252 39 0 chr4 79436098 79436201 -104852461 + L2 LINE L2 3199 3305 -8 955 266 63 8 chr4 79436731 79436968 -104851694 + MIR SINE MIR 12 261 -1 571 262 37 6 chr4 79437241 79437405 -104851257 - MIR SINE MIR -65 197 29 261 256 0 89 chr4 79437430 79437520 -104851142 - L2 LINE L2 0 3313 3232 199 291 139 51 chr4 79437725 79437883 -104850779 + MIR SINE MIR 22 193 -69 343 224 51 0 chr4 79438822 79438920 -104849742 + L1MC4 LINE L1 6614 6716 -1326 333 281 22 0 chr4 79438920 79439009 -104849653 + L1MC4 LINE L1 6613 6703 -1339 5450 192 6 36 chr4 79439127 79440057 -104848605 + L1PB4 LINE L1 5327 6211 -1373 1183 98 33 0 chr4 79440057 79440236 -104848426 + L1PB1 LINE L1 5956 6144 -7 5450 192 6 36 chr4 79440236 79440537 -104848125 + L1PB4 LINE L1 6211 6520 -1064 1707 137 93 3 chr4 79440537 79440837 -104847825 + L1PB4 LINE L1 7255 7581 -13 21 0 0 0 chr4 79440837 79440858 -104847804 + AT_rich Low_complexity Low_complexity 1 21 0 182 229 131 16 chr4 79441314 79441375 -104847287 - MIR SINE MIR -72 190 123 331 159 48 16 chr4 79441996 79442059 -104846603 + L2 LINE L2 3208 3272 0 26 0 0 0 chr4 79445098 79445124 -104843538 + AT_rich Low_complexity Low_complexity 1 26 0 204 273 41 107 chr4 79445640 79445761 -104842901 + MIR SINE MIR 105 217 -45 647 155 68 20 chr4 79446987 79447135 -104841527 + MER53 DNA DNA 17 171 -18 227 297 42 121 chr4 79447167 79447332 -104841330 + MER5A DNA MER1_type 37 188 -1 187 359 92 11 chr4 79448869 79449053 -104839609 + MIR SINE MIR 54 252 -10 225 0 0 0 chr4 79451653 79451678 -104836984 + (TC)n Simple_repeat Simple_repeat 2 26 0 230 338 0 0 chr4 79451783 79451854 -104836808 - L2 LINE L2 -1 3312 3242 250 297 141 55 chr4 79452246 79452374 -104836288 - MIR SINE MIR -56 206 68 309 228 89 81 chr4 79453109 79453232 -104835430 + MIR SINE MIR 47 170 -92 3732 153 37 21 chr4 79454184 79454911 -104833751 - L1MB3 LINE L1 -1 6182 5444 23 0 0 0 chr4 79455410 79455433 -104833229 + AT_rich Low_complexity Low_complexity 1 23 0 206 362 9 9 chr4 79455616 79455721 -104832941 + MIR SINE MIR 47 151 -111 264 328 164 9 chr4 79456662 79456778 -104831884 - MIR3 SINE MIR -66 142 9 192 40 0 0 chr4 79456874 79456899 -104831763 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 1150 295 52 26 chr4 79456899 79457667 -104830995 - L2 LINE L2 -28 3285 2502 21 71 0 0 chr4 79459773 79459815 -104828847 + AT_rich Low_complexity Low_complexity 1 42 0 268 319 0 0 chr4 79459901 79459970 -104828692 + L1MC4a LINE L1 5568 5636 -2172 28 0 0 0 chr4 79459970 79459998 -104828664 + AT_rich Low_complexity Low_complexity 1 28 0 2392 80 0 6 chr4 79460003 79460314 -104828348 - AluY SINE Alu -2 309 1 395 307 213 10 chr4 79460316 79460518 -104828144 + L1MC4a LINE L1 5626 5868 -1940 290 45 23 0 chr4 79461578 79461622 -104827040 + (TG)n Simple_repeat Simple_repeat 2 46 0 1389 140 28 4 chr4 79462228 79462478 -104826184 + L1MA2 LINE L1 6049 6304 0 1657 187 0 10 chr4 79463328 79463617 -104825045 - AluJb SINE Alu -25 287 2 332 273 55 76 chr4 79464522 79464681 -104823981 + L1 LINE L1 4151 4303 -1843 180 0 0 0 chr4 79464681 79464701 -104823961 + (CA)n Simple_repeat Simple_repeat 1 20 0 332 273 55 76 chr4 79464701 79464830 -104823832 + L1 LINE L1 4303 4433 -1713 2794 260 59 14 chr4 79464878 79465655 -104823007 - MER69 DNA AcHobo -1585 941 130 266 286 119 12 chr4 79466386 79466470 -104822192 + L2 LINE L2 3177 3269 -3 1143 73 0 0 chr4 79466705 79466856 -104821806 + L1PA8 LINE L1 6019 6169 -3 21 0 0 0 chr4 79466862 79466883 -104821779 + AT_rich Low_complexity Low_complexity 1 21 0 423 260 83 21 chr4 79466987 79467149 -104821513 - MLT1H LTR MaLR -233 176 37 3686 204 70 59 chr4 79467533 79468584 -104820078 - L1MC4 LINE L1 0 8042 6980 577 297 105 26 chr4 79468771 79469000 -104819662 - MIR SINE MIR -13 249 3 482 361 64 5 chr4 79469119 79469338 -104819324 + MIR SINE MIR 15 246 -16 458 212 89 34 chr4 79470627 79470773 -104817889 + MER103 DNA DNA 3 156 -10 188 274 132 9 chr4 79471226 79471332 -104817330 + L2 LINE L2 2832 2950 -363 750 191 225 5 chr4 79471501 79471710 -104816952 - L1ME1 LINE L1 -3 6163 5909 284 218 27 73 chr4 79471730 79471840 -104816822 - L1MCa LINE L1 -3479 2947 2843 1188 265 115 12 chr4 79471867 79472443 -104816219 - L1MCa LINE L1 -3675 2751 2079 2543 257 49 57 chr4 79472554 79472728 -104815934 + L1ME LINE L1 491 665 -5865 1262 200 19 19 chr4 79472728 79472998 -104815664 - L1PB4 LINE L1 0 6156 5887 2543 257 49 57 chr4 79472998 79473959 -104814703 + L1ME LINE L1 665 1549 -4981 1155 236 36 96 chr4 79474002 79474641 -104814021 + L1ME LINE L1 2111 2683 -3857 2286 121 0 0 chr4 79474641 79474946 -104813716 + AluSx SINE Alu 3 307 -5 1155 236 36 96 chr4 79474946 79475081 -104813581 + L1ME LINE L1 2683 2825 -3715 2262 109 6 3 chr4 79475086 79475397 -104813265 + AluSp SINE Alu 1 312 -1 567 301 96 17 chr4 79476427 79476666 -104811996 + MIR SINE MIR 2 259 -3 260 296 68 63 chr4 79476713 79476919 -104811743 + MIR SINE MIR 56 262 0 367 253 23 0 chr4 79476970 79477057 -104811605 + L2 LINE L2 3221 3309 -4 1156 204 150 63 chr4 79477161 79477725 -104810937 - MLT1E2 LTR MaLR 0 626 1 2081 101 37 14 chr4 79479644 79479941 -104808721 + AluSp SINE Alu 1 304 -9 1307 234 71 53 chr4 79480090 79480526 -104808136 - MLT1J1 LTR MaLR 0 446 3 32 0 0 0 chr4 79482043 79482075 -104806587 + AT_rich Low_complexity Low_complexity 1 32 0 380 141 16 84 chr4 79482075 79482266 -104806396 + (TAA)n Simple_repeat Simple_repeat 1 178 0 200 35 35 0 chr4 79482670 79482699 -104805963 + (TAGA)n Simple_repeat Simple_repeat 1 30 0 184 152 30 0 chr4 79482917 79482950 -104805712 + L3 LINE CR1 1541 1574 -3 * 224 309 10 52 chr4 79482941 79483038 -104805624 + MIR SINE MIR 49 141 -67 211 215 51 38 chr4 79484458 79484537 -104804125 - MIR SINE MIR 0 262 183 2033 112 3 17 chr4 79484974 79485294 -104803368 - AluSx SINE Alu 0 312 1 2565 52 0 0 chr4 79485303 79485608 -104803054 - AluY SINE Alu -6 305 1 546 225 19 19 chr4 79486918 79487076 -104801586 + MIR SINE MIR 106 262 0 29 28 0 0 chr4 79487090 79487126 -104801536 + AT_rich Low_complexity Low_complexity 1 36 0 329 43 21 0 chr4 79489623 79489670 -104798992 + (TC)n Simple_repeat Simple_repeat 2 49 0 22 35 0 0 chr4 79491500 79491529 -104797133 + GC_rich Low_complexity Low_complexity 1 29 0 2475 45 7 19 chr4 79492135 79492445 -104796217 + AluSq SINE Alu 1 306 -7 1225 49 7 0 chr4 79494857 79495001 -104793661 + AluSp SINE Alu 5 149 -164 608 48 12 0 chr4 79495213 79495297 -104793365 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 241 82 41 0 chr4 79496031 79496080 -104792582 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 819 225 50 12 chr4 79496599 79496965 -104791697 - MLT1F LTR MaLR -1 541 5 213 39 0 0 chr4 79497119 79497145 -104791517 + (CTG)n Simple_repeat Simple_repeat 1 26 0 * 237 132 0 0 chr4 79497143 79497181 -104791481 + (ATG)n Simple_repeat Simple_repeat 1 38 0 492 170 106 0 chr4 79497196 79497290 -104791372 - MIR SINE MIR -24 238 135 432 37 0 0 chr4 79498848 79498902 -104789760 + (TG)n Simple_repeat Simple_repeat 2 55 0 402 21 0 0 chr4 79499294 79499341 -104789321 + (CA)n Simple_repeat Simple_repeat 1 47 0 212 167 21 0 chr4 79500108 79500156 -104788506 + (CTA)n Simple_repeat Simple_repeat 1 49 0 464 179 36 14 chr4 79500401 79500541 -104788121 + GA-rich Low_complexity Low_complexity 4 146 0 189 0 0 0 chr4 79505195 79505216 -104783446 + (TG)n Simple_repeat Simple_repeat 1 21 0 380 275 122 96 chr4 79507056 79507833 -104780829 - L1M2 LINE L1 -5447 1402 468 21 57 0 0 chr4 79509005 79509040 -104779622 + GC_rich Low_complexity Low_complexity 1 35 0 427 216 100 100 chr4 79513978 79514228 -104774434 - L1ME4a LINE L1 0 6121 5872 846 201 91 10 chr4 79514487 79514686 -104773976 - MIR SINE MIR -44 218 4 51 61 0 17 chr4 79514943 79515020 -104773642 + AT_rich Low_complexity Low_complexity 1 77 -36 1591 194 7 10 chr4 79515020 79515308 -104773354 + AluJo SINE Alu 1 287 -25 51 61 0 17 chr4 79515308 79515345 -104773317 + AT_rich Low_complexity Low_complexity 77 113 0 2303 218 124 19 chr4 79516144 79516823 -104771839 - MER20B DNA MER1_type -1 782 33 277 239 43 11 chr4 79516886 79516978 -104771684 - MIR SINE MIR -50 212 118 1108 187 15 10 chr4 79517140 79517343 -104771319 - MER3 DNA MER1_type -5 204 1 204 125 0 0 chr4 79517426 79517458 -104771204 + (CA)n Simple_repeat Simple_repeat 2 33 0 317 385 37 0 chr4 79517533 79517642 -104771020 + L2 LINE L2 3122 3234 -38 32 0 0 0 chr4 79519300 79519332 -104769330 + AT_rich Low_complexity Low_complexity 1 32 0 189 298 0 21 chr4 79519556 79519603 -104769059 + MIR3 SINE MIR 14 59 -149 2448 156 29 37 chr4 79519637 79520155 -104768507 + L1MB8 LINE L1 5659 6172 -6 218 191 0 0 chr4 79521969 79522016 -104766646 + (TG)n Simple_repeat Simple_repeat 2 48 0 2227 102 0 7 chr4 79523862 79524156 -104764506 + AluSq SINE Alu 1 292 -21 331 267 0 53 chr4 79525372 79525435 -104763227 + MER112 DNA MER1_type 137 191 -69 1554 179 24 93 chr4 79525435 79525854 -104762808 + MLT1B LTR MaLR 1 390 0 331 267 0 53 chr4 79525854 79525921 -104762741 + MER112 DNA MER1_type 191 260 0 546 250 159 14 chr4 79525932 79526140 -104762522 - L3 LINE CR1 -80 1497 1260 2146 124 3 10 chr4 79526348 79526647 -104762015 - AluSx SINE Alu -15 297 1 572 302 92 78 chr4 79527069 79527606 -104761056 + L2 LINE L2 2136 2664 -608 752 291 100 39 chr4 79527606 79528098 -104760564 - LTR33A LTR ERVL 0 523 2 572 302 92 78 chr4 79528098 79528699 -104759963 + L2 LINE L2 2664 3272 0 29 47 0 0 chr4 79528993 79529036 -104759626 + AT_rich Low_complexity Low_complexity 1 43 0 2422 222 89 33 chr4 79529064 79529343 -104759319 + Charlie1a DNA MER1_type 1 263 -2498 2481 67 0 7 chr4 79529343 79529642 -104759020 + AluY SINE Alu 1 297 -14 2422 222 89 33 chr4 79529642 79530050 -104758612 + Charlie1a DNA MER1_type 263 726 -729 1987 191 6 65 chr4 79530059 79530582 -104758080 - MLT1D LTR MaLR -13 492 1 3243 159 40 19 chr4 79530582 79531301 -104757361 + Charlie1a DNA MER1_type 721 1454 -1 317 267 44 44 chr4 79531951 79532086 -104756576 + MIR SINE MIR 78 212 -50 3196 252 101 56 chr4 79532412 79532480 -104756182 - L2 LINE L2 -2 3311 3247 184 57 29 29 chr4 79532480 79532515 -104756147 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 3196 252 101 56 chr4 79532515 79532974 -104755688 - L2 LINE L2 -66 3247 2810 11701 25 0 2 chr4 79532974 79535118 -104753544 + L1PA4 LINE L1 4015 6155 0 3196 252 101 56 chr4 79535118 79535187 -104753475 - L2 LINE L2 -503 2810 2746 2191 128 0 19 chr4 79535187 79535506 -104753156 + AluSq SINE Alu 1 313 0 3196 252 101 56 chr4 79535506 79536451 -104752211 - L2 LINE L2 -567 2746 1696 1065 190 29 66 chr4 79537036 79537446 -104751216 - L1MC5 LINE L1 -25 7936 7542 21 0 0 0 chr4 79537579 79537600 -104751062 + AT_rich Low_complexity Low_complexity 1 21 0 229 266 160 30 chr4 79538052 79538221 -104750441 - MIR3 SINE MIR -2 206 16 1283 213 17 0 chr4 79538321 79538556 -104750106 + MER8 DNA MER2_type 1 239 0 670 286 87 0 chr4 79539236 79539477 -104749185 - MIR SINE MIR 0 262 1 2031 269 45 54 chr4 79539680 79540691 -104747971 + L1MC4 LINE L1 6839 7840 -202 611 167 0 0 chr4 79540691 79540787 -104747875 + AluJ/FLAM SINE Alu 1 96 -216 819 157 0 0 chr4 79540787 79540921 -104747741 + AluJo/FRAM SINE Alu 179 312 0 216 67 0 0 chr4 79540983 79541013 -104747649 + (TG)n Simple_repeat Simple_repeat 1 30 0 622 132 90 49 chr4 79541013 79541157 -104747505 + L1MB2 LINE L1 6015 6164 -7 285 271 25 49 chr4 79541183 79541305 -104747357 + L1MC4 LINE L1 7922 8040 -2 1646 178 15 0 chr4 79541579 79541849 -104746813 - AluJo SINE Alu -38 274 1 220 173 0 39 chr4 79542073 79542125 -104746537 + GA-rich Low_complexity Low_complexity 2 51 0 221 353 106 12 chr4 79542248 79542418 -104746244 - MIR SINE MIR -57 205 20 7006 168 7 3 chr4 79542448 79543901 -104744761 + L1PA14 LINE L1 4026 5485 -689 1596 117 4 9 chr4 79543901 79544131 -104744531 + AluSg SINE Alu 1 229 -81 2866 95 16 19 chr4 79544231 79544662 -104744000 + L1PA14 LINE L1 5729 6158 -3 1125 240 41 25 chr4 79544671 79545037 -104743625 + L1MC4 LINE L1 7531 7902 -140 1414 197 0 63 chr4 79545065 79545380 -104743282 + AluJo SINE Alu 7 301 -11 229 208 125 17 chr4 79545416 79545536 -104743126 + L1MC4 LINE L1 7905 8037 -5 1761 178 0 7 chr4 79545552 79545838 -104742824 + AluSx SINE Alu 7 290 -22 565 324 53 31 chr4 79546295 79546657 -104742005 + L2 LINE L2 1184 2083 -1231 26 30 0 0 chr4 79546697 79546730 -104741932 + AT_rich Low_complexity Low_complexity 1 33 0 189 94 0 0 chr4 79547045 79547077 -104741585 + (TA)n Simple_repeat Simple_repeat 2 33 0 1113 169 103 66 chr4 79547614 79548040 -104740622 + LTR7 LTR ERV1 1 442 -8 2710 157 36 6 chr4 79548156 79548659 -104740003 - Tigger3(Golem) DNA MER2_type -3 3026 2509 7216 46 12 0 chr4 79548659 79550004 -104738658 - L1PA5 LINE L1 -5 6149 4796 8417 41 4 3 chr4 79550004 79551099 -104737563 + L1P LINE L1 3590 4685 -1461 267 323 101 0 chr4 79651477 79651576 -104637086 - MIR SINE MIR -112 150 42 429 353 39 7 chr4 79652512 79652665 -104635997 - L2 LINE L2 0 3272 3115 299 311 49 8 chr4 79652713 79652835 -104635827 - L2 LINE L2 0 3313 3187 257 196 0 20 chr4 79654555 79654606 -104634056 + L2 LINE L2 3220 3269 -3 25 90 0 0 chr4 79654752 79654819 -104633843 + AT_rich Low_complexity Low_complexity 1 67 0 353 154 73 52 chr4 79654902 79655005 -104633657 + L1MCb LINE L1 569 865 -5369 * 407 202 21 0 chr4 79655004 79655098 -104633564 - L1MCa LINE L1 -5808 618 523 954 125 0 0 chr4 79655150 79655278 -104633384 - AluSp SINE Alu -185 128 1 328 246 144 8 chr4 79655548 79655666 -104632996 - L2 LINE L2 -10 3303 3170 767 223 36 16 chr4 79655917 79656110 -104632552 + MER58A DNA MER1_type 19 215 -9 1751 128 7 40 chr4 79656110 79656407 -104632255 + AluJb SINE Alu 13 299 -13 1718 154 6 49 chr4 79656898 79657243 -104631419 + L1MB8 LINE L1 5849 6178 0 2004 114 0 24 chr4 79657530 79657839 -104630823 - AluSx SINE Alu 0 304 3 217 144 22 0 chr4 79657954 79658000 -104630662 - MIR SINE MIR -62 146 99 480 62 37 0 chr4 79658271 79658352 -104630310 + (TA)n Simple_repeat Simple_repeat 1 84 0 1715 135 35 14 chr4 79658362 79658644 -104630018 - AluY SINE Alu -23 288 1 265 368 60 8 chr4 79658754 79658871 -104629791 + L2 LINE L2 3191 3313 0 575 177 9 18 chr4 79660236 79660349 -104628313 - MER58A DNA MER1_type 0 112 1 2073 105 28 0 chr4 79660777 79661063 -104627599 - AluSx SINE Alu -18 294 1 1819 142 7 0 chr4 79661504 79661786 -104626876 - AluSg SINE Alu -15 295 12 1527 198 3 36 chr4 79662009 79662317 -104626345 + AluJb SINE Alu 1 298 -14 870 168 0 0 chr4 79662361 79662486 -104626176 + AluJb SINE Alu 1 125 -187 651 307 40 9 chr4 79663078 79663404 -104625258 - L1M4 LINE L1 -2519 3627 3292 308 64 21 0 chr4 79663432 79663479 -104625183 + (TC)n Simple_repeat Simple_repeat 1 48 0 321 215 15 0 chr4 79663479 79663544 -104625118 - MER2 DNA MER2_type 0 345 280 2229 80 0 3 chr4 79663555 79663841 -104624821 + AluSx SINE Alu 5 289 -23 2228 117 3 0 chr4 79663847 79664146 -104624516 + AluSq SINE Alu 1 300 -13 953 122 12 19 chr4 79664496 79665391 -104623271 + HSATII Satellite Satellite 1 888 -1 998 108 12 9 chr4 79665421 79668494 -104620168 + HSATII Satellite Satellite 1 3084 -2 967 110 15 17 chr4 79668528 79670259 -104618403 + HSATII Satellite Satellite 1 1726 -3 977 113 13 12 chr4 79670273 79670778 -104617884 + HSATII Satellite Satellite 1 505 -1 959 111 16 12 chr4 79670816 79672423 -104616239 + HSATII Satellite Satellite 1 1614 0 959 107 7 16 chr4 79672446 79673562 -104615100 + HSATII Satellite Satellite 1 1105 -121 953 121 16 15 chr4 79673584 79675484 -104613178 + HSATII Satellite Satellite 1 1901 0 959 110 5 14 chr4 79675507 79676169 -104612493 + HSATII Satellite Satellite 1 656 -9 783 117 18 23 chr4 79676200 79676371 -104612291 + HSATII Satellite Satellite 1 170 0 911 122 12 19 chr4 79676396 79677238 -104611424 + HSATII Satellite Satellite 1 836 0 920 107 15 7 chr4 79677425 79678270 -104610392 + HSATII Satellite Satellite 1 851 0 869 74 17 51 chr4 79678296 79678471 -104610191 + HSATII Satellite Satellite 1 169 -1 965 116 12 14 chr4 79678497 79680046 -104608616 + HSATII Satellite Satellite 1 1545 0 986 114 14 16 chr4 79680072 79681760 -104606902 + HSATII Satellite Satellite 1 1685 -27 965 117 8 15 chr4 79681782 79683452 -104605210 + HSATII Satellite Satellite 1 1658 -18 1015 88 6 18 chr4 79683492 79683663 -104604999 + HSATII Satellite Satellite 1 169 -1 855 132 17 20 chr4 79683766 79684201 -104604461 - HSATII Satellite Satellite -4 433 1 998 119 11 16 chr4 79684224 79685896 -104602766 - HSATII Satellite Satellite 0 1664 1 944 101 21 9 chr4 79685946 79686282 -104602380 - HSATII Satellite Satellite 0 340 1 980 115 11 11 chr4 79686312 79688525 -104600137 - HSATII Satellite Satellite 0 2214 1 911 145 15 18 chr4 79688555 79689000 -104599662 - HSATII Satellite Satellite -8 443 1 965 103 7 19 chr4 79689022 79689643 -104599019 - HSATII Satellite Satellite -9 613 1 989 114 14 9 chr4 79689654 79691244 -104597418 - HSATII Satellite Satellite -8 1596 1 998 111 10 14 chr4 79691258 79695629 -104593033 - HSATII Satellite Satellite 0 4352 1 859 132 3 20 chr4 79695659 79696007 -104592655 - HSATII Satellite Satellite -121 342 1 998 115 12 12 chr4 79696183 79698973 -104589689 - HSATII Satellite Satellite 0 2789 1 998 115 15 13 chr4 79698996 79702651 -104586011 - HSATII Satellite Satellite -49 3663 1 192 97 0 0 chr4 79702842 79702873 -104585789 - HSATII Satellite Satellite -60 110 80 627 149 19 13 chr4 79702918 79703072 -104585590 - HSATII Satellite Satellite -8 162 8 920 134 18 10 chr4 79703083 79703665 -104584997 - HSATII Satellite Satellite -8 586 1 986 106 11 12 chr4 79703676 79705150 -104583512 - HSATII Satellite Satellite -51 1471 1 915 114 11 11 chr4 79705280 79705811 -104582851 - HSATII Satellite Satellite -9 531 1 977 119 9 15 chr4 79705833 79707123 -104581539 - HSATII Satellite Satellite -1 1282 1 1055 109 11 14 chr4 79707138 79708404 -104580258 - HSATII Satellite Satellite 0 1261 1 947 104 14 13 chr4 79708480 79709456 -104579206 - HSATII Satellite Satellite 0 977 1 1010 123 11 18 chr4 79709487 79710451 -104578211 - HSATII Satellite Satellite -1 957 1 998 105 11 12 chr4 79710489 79711775 -104576887 - HSATII Satellite Satellite 0 1285 1 980 114 14 14 chr4 79711805 79713083 -104575579 - HSATII Satellite Satellite 0 1277 1 965 118 15 16 chr4 79713113 79714866 -104573796 - HSATII Satellite Satellite -8 1751 1 1019 101 11 14 chr4 79714888 79716167 -104572495 - HSATII Satellite Satellite 0 1275 1 1010 119 8 13 chr4 79716197 79718248 -104570414 - HSATII Satellite Satellite 0 2039 1 911 122 23 14 chr4 79718271 79718759 -104569903 - HSATII Satellite Satellite -8 492 1 785 100 0 21 chr4 79718775 79718915 -104569747 - HSATII Satellite Satellite -17 153 17 1064 112 9 7 chr4 79718938 79719383 -104569279 - HSATII Satellite Satellite -9 446 1 980 116 11 15 chr4 79719406 79724248 -104564414 - HSATII Satellite Satellite -8 4824 1 965 113 9 13 chr4 79724270 79724723 -104563939 - HSATII Satellite Satellite -1 451 1 839 104 21 0 chr4 79724738 79724882 -104563780 - HSATII Satellite Satellite -23 147 1 785 100 0 21 chr4 79724898 79725038 -104563624 - HSATII Satellite Satellite -17 153 17 1031 115 11 13 chr4 79725061 79726658 -104562004 - HSATII Satellite Satellite -8 1594 1 980 106 12 12 chr4 79726683 79727959 -104560703 - HSATII Satellite Satellite 0 1275 1 932 143 15 18 chr4 79727989 79728433 -104560229 - HSATII Satellite Satellite -8 442 1 980 104 12 12 chr4 79728456 79729735 -104558927 - HSATII Satellite Satellite 0 1279 1 959 119 9 15 chr4 79729765 79731348 -104557314 - HSATII Satellite Satellite 0 1573 1 911 124 23 14 chr4 79731371 79731859 -104556803 - HSATII Satellite Satellite -8 492 1 785 100 0 21 chr4 79731875 79732015 -104556647 - HSATII Satellite Satellite -17 153 17 1031 110 13 11 chr4 79732038 79735404 -104553258 - HSATII Satellite Satellite 0 3374 1 986 112 11 13 chr4 79735434 79742697 -104545965 - HSATII Satellite Satellite 0 7248 1 980 113 11 13 chr4 79742731 79744284 -104544378 - HSATII Satellite Satellite -98 1549 1 947 113 15 12 chr4 79744307 79746200 -104542462 - HSATII Satellite Satellite 0 1898 1 911 130 15 18 chr4 79746230 79746675 -104541987 - HSATII Satellite Satellite -8 443 1 959 98 4 24 chr4 79746689 79746953 -104541709 - HSATII Satellite Satellite -50 258 1 998 116 9 17 chr4 79746972 79748374 -104540288 - HSATII Satellite Satellite -99 1390 1 965 115 15 15 chr4 79748405 79749757 -104538905 - HSATII Satellite Satellite -8 1352 1 1031 101 2 10 chr4 79749781 79750379 -104538283 - HSATII Satellite Satellite -9 593 1 1019 118 13 12 chr4 79750403 79751999 -104536663 - HSATII Satellite Satellite -8 1598 1 1012 100 12 14 chr4 79752021 79753300 -104535362 - HSATII Satellite Satellite 0 1275 1 974 132 12 13 chr4 79753330 79753781 -104534881 - HSATII Satellite Satellite -1 450 1 1010 108 8 18 chr4 79753796 79754294 -104534368 - HSATII Satellite Satellite -1 493 1 1052 103 9 13 chr4 79754332 79755502 -104533160 - HSATII Satellite Satellite -73 1165 1 965 131 13 18 chr4 79755554 79756053 -104532609 - HSATII Satellite Satellite -8 496 1 977 112 10 15 chr4 79756075 79757827 -104530835 - HSATII Satellite Satellite -8 1743 1 1031 113 10 13 chr4 79757851 79759341 -104529321 - HSATII Satellite Satellite -2 1485 1 923 137 17 18 chr4 79759482 79759926 -104528736 - HSATII Satellite Satellite -8 443 1 818 82 0 22 chr4 79759948 79760082 -104528580 - HSATII Satellite Satellite -23 147 17 1012 98 9 12 chr4 79760101 79760673 -104527989 - HSATII Satellite Satellite -101 570 1 998 116 11 14 chr4 79760708 79763004 -104525658 - HSATII Satellite Satellite 0 2289 1 944 134 15 18 chr4 79763034 79763479 -104525183 - HSATII Satellite Satellite -8 443 1 1036 108 10 15 chr4 79763501 79768021 -104520641 - HSATII Satellite Satellite 0 4501 1 932 126 18 19 chr4 79768044 79768636 -104520026 - HSATII Satellite Satellite -8 591 1 977 117 14 14 chr4 79768658 79771720 -104516942 - HSATII Satellite Satellite -8 3060 1 959 110 10 18 chr4 79771742 79773326 -104515336 - HSATII Satellite Satellite -2 1571 1 793 110 0 24 chr4 79773366 79773580 -104515082 - HSATII Satellite Satellite -99 208 1 932 102 16 14 chr4 79773689 79774197 -104514465 - HSATII Satellite Satellite 0 509 1 998 118 12 14 chr4 79774227 79777459 -104511203 - HSATII Satellite Satellite 0 3225 1 953 129 3 16 chr4 79777489 79777844 -104510818 - HSATII Satellite Satellite -121 350 1 1998 138 8 40 chr4 79878525 79878879 -104409783 - MER2 DNA MER2_type 0 344 2 993 166 33 47 chr4 79879660 79879871 -104408791 + AluJb SINE Alu 87 294 -18 189 291 43 151 chr4 79879920 79880178 -104408484 - L2 LINE L2 -94 3178 2949 458 320 51 79 chr4 79880334 79880487 -104408175 - L2 LINE L2 0 3272 3116 1420 183 122 10 chr4 79880487 79880799 -104407863 + MER7A DNA MER2_type 1 345 -1 458 320 51 79 chr4 79880799 79881001 -104407661 - L2 LINE L2 -156 3116 2927 2156 123 10 3 chr4 79882672 79882974 -104405688 + AluSx SINE Alu 1 304 -8 212 189 0 0 chr4 79883028 79883065 -104405597 + (TA)n Simple_repeat Simple_repeat 1 37 0 2231 119 0 3 chr4 79883290 79883592 -104405070 + AluSx SINE Alu 1 301 -11 732 178 0 47 chr4 79884094 79884223 -104404439 + FLAM_A SINE Alu 1 123 -10 364 292 25 56 chr4 79884359 79884520 -104404142 - L1ME LINE L1 -336 5785 5630 1919 186 27 63 chr4 79884625 79885103 -104403559 - MER65C LTR ERV1 0 461 1 522 184 114 25 chr4 79886432 79886590 -104402072 - MER58C DNA MER1_type 0 215 44 21 82 0 0 chr4 79888067 79888116 -104400546 + AT_rich Low_complexity Low_complexity 1 49 0 393 143 0 31 chr4 79888952 79889050 -104399612 + (CA)n Simple_repeat Simple_repeat 1 95 0 304 204 57 87 chr4 79889871 79889936 -104398726 + MIR SINE MIR 37 102 -160 2344 95 3 0 chr4 79889936 79890242 -104398420 + AluSp SINE Alu 1 307 -6 304 204 57 87 chr4 79890242 79890309 -104398353 + MIR SINE MIR 102 229 -33 830 147 0 0 chr4 79890755 79890884 -104397778 - FLAM_C SINE Alu -4 129 1 2072 115 0 14 chr4 79891464 79891772 -104396890 + AluSx SINE Alu 1 304 0 455 269 45 68 chr4 79892034 79892343 -104396319 - HAL1 LINE L1 -380 2127 1826 231 219 95 101 chr4 79892640 79892809 -104395853 - HAL1 LINE L1 -2301 206 39 2441 83 0 10 chr4 79893148 79893461 -104395201 + AluY SINE Alu 2 311 0 1984 158 0 0 chr4 79894026 79894318 -104394344 - AluSx SINE Alu -20 292 1 234 341 109 36 chr4 79894609 79894996 -104393666 - L2 LINE L2 -213 3059 2583 2406 90 3 0 chr4 79895043 79895354 -104393308 + AluSp SINE Alu 1 312 -1 622 172 80 0 chr4 79895449 79895600 -104393062 - L1MD1 LINE L1 -3 6239 6077 661 221 8 0 chr4 79895611 79895742 -104392920 - FLAM_A SINE Alu -1 132 1 189 298 83 0 chr4 79895901 79895985 -104392677 + L2 LINE L2 3180 3270 -2 26 0 0 0 chr4 79896754 79896780 -104391882 + AT_rich Low_complexity Low_complexity 1 26 0 710 142 9 0 chr4 79897212 79897325 -104391337 + FRAM SINE Alu 49 162 -14 603 224 15 88 chr4 79897722 79897927 -104390735 + MIR SINE MIR 72 261 -1 21 36 0 0 chr4 79898002 79898030 -104390632 + AT_rich Low_complexity Low_complexity 1 28 0 2025 130 0 3 chr4 79899346 79899631 -104389031 + AluJb SINE Alu 1 284 -28 23 92 0 0 chr4 79900085 79900150 -104388512 + AT_rich Low_complexity Low_complexity 1 65 0 25 31 0 0 chr4 79900746 79900778 -104387884 + AT_rich Low_complexity Low_complexity 1 32 0 213 139 0 0 chr4 79901153 79901196 -104387466 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr4 79901745 79901766 -104386896 + AT_rich Low_complexity Low_complexity 1 21 0 756 127 0 0 chr4 79902083 79902225 -104386437 + (TTCC)n Simple_repeat Simple_repeat 1 142 0 1877 176 0 3 chr4 79902254 79902560 -104386102 - AluJb SINE Alu -5 307 3 2180 125 0 6 chr4 79903017 79903330 -104385332 - AluSx SINE Alu -1 311 1 1943 122 191 6 chr4 79903794 79904155 -104384507 - MSTA LTR MaLR 0 428 1 207 0 0 0 chr4 79905353 79905376 -104383286 + (TA)n Simple_repeat Simple_repeat 2 24 0 314 259 47 12 chr4 79905721 79905806 -104382856 + MER5B DNA MER1_type 1 88 -90 246 33 100 0 chr4 79906707 79906767 -104381895 + (TA)n Simple_repeat Simple_repeat 1 66 0 233 28 83 0 chr4 79907374 79907410 -104381252 + T-rich Low_complexity Low_complexity 2 40 0 188 33 0 33 chr4 79907637 79907667 -104380995 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1779 152 40 0 chr4 79907671 79907947 -104380715 - AluSq SINE Alu -26 287 1 2099 117 10 3 chr4 79908627 79908926 -104379736 + AluSp SINE Alu 1 301 -12 24 32 0 0 chr4 79909220 79909251 -104379411 + AT_rich Low_complexity Low_complexity 1 31 0 797 250 18 35 chr4 79910124 79910352 -104378310 - MER58A DNA MER1_type 0 224 1 363 262 215 13 chr4 79910459 79910692 -104377970 - L2 LINE L2 -225 3088 2809 568 254 38 53 chr4 79912374 79912583 -104376079 - L2 LINE L2 0 3313 3108 1992 246 92 29 chr4 79912936 79913971 -104374691 - L1M4 LINE L1 -2897 3249 2150 239 306 28 28 chr4 79918318 79918426 -104370236 + L2 LINE L2 3139 3246 -26 1844 153 0 20 chr4 79919566 79919867 -104368795 - AluJb SINE Alu -1 311 17 258 77 0 0 chr4 79920085 79920124 -104368538 - L1MB7 LINE L1 -10 6174 6136 * 632 216 119 11 chr4 79920122 79920307 -104368355 - L1ME1 LINE L1 -86 6080 5876 618 224 18 24 chr4 79920352 79920517 -104368145 - L1ME1 LINE L1 -407 5759 5596 859 110 0 0 chr4 79920528 79920646 -104368016 + AluSq/x SINE Alu 2 119 -194 2516 198 46 14 chr4 79921203 79921739 -104366923 + L1MB7 LINE L1 5530 6047 -137 2721 70 6 8 chr4 79921739 79922095 -104366567 - THE1A LTR MaLR 0 355 1 11761 84 6 9 chr4 79922095 79922401 -104366261 - THE1A-int LTR MaLR 0 1580 1275 2267 121 0 3 chr4 79922401 79922708 -104365954 - AluSq SINE Alu -7 306 1 11761 84 6 9 chr4 79922708 79923986 -104364676 - THE1A-int LTR MaLR -305 1275 1 2667 80 11 0 chr4 79923986 79924337 -104364325 - THE1A LTR MaLR 0 355 1 2516 198 46 14 chr4 79924337 79924424 -104364238 + L1MB7 LINE L1 6046 6175 -9 1754 148 48 3 chr4 79924793 79925084 -104363578 + AluJb SINE Alu 1 304 -8 805 283 111 19 chr4 79925223 79925591 -104363071 - L2 LINE L2 -2 3311 2910 504 297 93 16 chr4 79927034 79927216 -104361446 - MIR SINE MIR -31 231 36 3274 187 109 49 chr4 79927570 79928550 -104360112 + Charlie1a DNA MER1_type 1 1039 -416 5205 149 21 3 chr4 79928555 79929524 -104359138 + L1MA3 LINE L1 4045 5030 -1116 5626 117 178 100 chr4 79929649 79931203 -104357459 + pTR5 LTR ERV1 764 2438 0 6053 135 14 10 chr4 79931205 79932475 -104356187 + L1MA3 LINE L1 5026 6301 -4 354 173 40 0 chr4 79932475 79932550 -104356112 + Charlie1a DNA MER1_type 1030 1107 -348 1145 181 93 23 chr4 79932653 79932789 -104355873 + Charlie1a DNA MER1_type 1076 1201 -1560 2187 93 22 26 chr4 79932789 79933100 -104355562 - AluSx SINE Alu -2 310 1 1145 181 93 23 chr4 79933100 79933317 -104355345 + Charlie1a DNA MER1_type 1201 1454 -1 23 0 0 0 chr4 79933821 79933844 -104354818 + AT_rich Low_complexity Low_complexity 1 23 0 214 277 0 0 chr4 79935281 79935328 -104353334 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 206 62 31 0 chr4 79936575 79936607 -104352055 + (TA)n Simple_repeat Simple_repeat 1 33 0 21 36 0 0 chr4 79937388 79937416 -104351246 + AT_rich Low_complexity Low_complexity 1 28 0 791 186 0 0 chr4 79938878 79939007 -104349655 - FLAM_C SINE Alu -4 129 1 1708 187 0 0 chr4 79939382 79939666 -104348996 + AluJo SINE Alu 5 288 -24 2375 95 0 0 chr4 79939678 79939983 -104348679 + AluSg SINE Alu 1 305 -5 1402 116 75 0 chr4 79940122 79940321 -104348341 - AluSq SINE Alu -99 214 1 486 283 58 53 chr4 79940499 79940725 -104347937 - MIR SINE MIR -34 228 2 536 281 100 41 chr4 79940931 79941830 -104346832 + L1ME3 LINE L1 4918 5912 -250 2226 134 3 0 chr4 79942750 79943057 -104345605 + AluJb SINE Alu 5 312 0 248 260 0 0 chr4 79944891 79944968 -104343694 - L1MC4 LINE L1 -1339 6703 6627 2115 132 0 0 chr4 79944968 79945255 -104343407 - AluSg SINE Alu -23 287 1 920 193 0 17 chr4 79945342 79945523 -104343139 - FRAM SINE Alu -1 175 1 1653 155 47 19 chr4 79945672 79945994 -104342668 - MER2 DNA MER2_type -5 340 10 2028 138 14 7 chr4 79947770 79948066 -104340596 + AluSx SINE Alu 1 298 -14 300 240 30 10 chr4 79948070 79948170 -104340492 + MER103 DNA DNA 35 136 -30 209 352 0 0 chr4 79948375 79948429 -104340233 + L3b LINE CR1 1277 1330 -253 317 304 126 0 chr4 79949948 79950083 -104338579 - MIR SINE MIR -14 248 97 1834 103 0 26 chr4 79951128 79951427 -104337235 + AluY SINE Alu 39 311 0 2191 114 3 0 chr4 79952211 79952509 -104336153 - AluSx SINE Alu -13 299 1 1647 193 20 0 chr4 79952775 79953081 -104335581 - 7SLRNA srpRNA srpRNA -5 315 4 393 307 104 15 chr4 79954643 79954845 -104333817 + MIR SINE MIR 31 250 -12 209 222 0 0 chr4 79957694 79957739 -104330923 + A-rich Low_complexity Low_complexity 1 45 0 411 232 173 6 chr4 79958078 79958246 -104330416 - MIR SINE MIR -10 252 57 2365 81 3 3 chr4 79958622 79958920 -104329742 + AluSg SINE Alu 1 298 -12 847 153 8 0 chr4 79959657 79959788 -104328874 + FLAM_C SINE Alu 2 133 0 285 295 13 0 chr4 79960365 79960443 -104328219 + L2 LINE L2 2570 2648 -666 180 0 0 0 chr4 79960566 79960586 -104328076 + (GA)n Simple_repeat Simple_repeat 2 21 0 335 316 118 7 chr4 79960599 79960751 -104327911 + L2 LINE L2 2665 2833 -481 1507 151 63 25 chr4 79961334 79961651 -104327011 + MER44D DNA MER2_type 2 600 -9 373 237 26 83 chr4 79962090 79962246 -104326416 + MER103 DNA DNA 20 166 0 21 0 0 0 chr4 79963302 79963323 -104325339 + AT_rich Low_complexity Low_complexity 1 21 0 1590 179 50 0 chr4 79963323 79963603 -104325059 - AluJo SINE Alu -18 294 1 1883 148 22 0 chr4 79963720 79964020 -104324642 - AluSx SINE Alu 0 306 1 4397 187 25 7 chr4 79964084 79965225 -104323437 - L1MB5 LINE L1 0 6174 5012 2100 139 3 0 chr4 79965235 79965536 -104323126 - AluJb SINE Alu -10 302 1 1700 133 30 53 chr4 79965853 79966154 -104322508 + AluSx SINE Alu 1 294 -18 1215 113 6 0 chr4 79967047 79967215 -104321447 - AluSg/x SINE Alu -18 294 126 2421 58 7 3 chr4 79967847 79968157 -104320505 + AluY SINE Alu 1 311 0 1332 273 34 43 chr4 79968452 79969024 -104319638 + L2 LINE L2 2748 3313 0 180 320 100 10 chr4 79971407 79971507 -104317155 - L2 LINE L2 -5 3308 3200 1810 163 30 0 chr4 79971961 79972262 -104316400 - AluJb SINE Alu -2 310 1 298 296 179 55 chr4 79972262 79972647 -104316015 - L2 LINE L2 -566 2748 2316 1589 195 0 13 chr4 79973566 79973869 -104314793 - AluJb SINE Alu -9 303 5 740 238 23 69 chr4 79974475 79974736 -104313926 - MER112 DNA MER1_type -11 249 1 1910 124 18 3 chr4 79974748 79975054 -104313608 - AluSx SINE Alu 0 312 1 708 183 0 0 chr4 79975085 79975200 -104313462 - FLAM_C SINE Alu -16 127 13 334 303 69 12 chr4 79976441 79976565 -104312097 + L1ME LINE L1 5309 5425 -696 29 28 0 0 chr4 79976565 79976601 -104312061 + AT_rich Low_complexity Low_complexity 1 36 0 2253 96 0 0 chr4 79976603 79976895 -104311767 + AluSg SINE Alu 1 292 -18 334 303 69 12 chr4 79976895 79977071 -104311591 + L1ME LINE L1 5425 5670 -451 1322 157 29 120 chr4 79977074 79977424 -104311238 + AluYb8 SINE Alu 1 318 0 2025 109 23 17 chr4 79977472 79977774 -104310888 + AluSx SINE Alu 2 305 -7 2215 110 3 0 chr4 79978869 79979160 -104309502 + AluSc SINE Alu 1 292 -17 1474 199 56 0 chr4 79979169 79979436 -104309226 - AluJb SINE Alu -24 288 7 22 56 0 0 chr4 79979463 79979499 -104309163 + AT_rich Low_complexity Low_complexity 1 36 0 2432 80 0 13 chr4 79979697 79980011 -104308651 + AluY SINE Alu 1 310 -1 21 0 0 0 chr4 79980194 79980215 -104308447 + AT_rich Low_complexity Low_complexity 1 21 0 2538 62 0 3 chr4 79980525 79980834 -104307828 + AluY SINE Alu 1 308 -3 42 20 0 0 chr4 79980942 79980991 -104307671 + AT_rich Low_complexity Low_complexity 1 49 0 2348 73 3 10 chr4 79981188 79981490 -104307172 + AluY SINE Alu 1 300 -11 2465 67 0 10 chr4 79981547 79981861 -104306801 + AluY SINE Alu 1 311 0 808 177 124 5 chr4 79982270 79982479 -104306183 - ORSL DNA AcHobo 0 275 42 2429 47 0 33 chr4 79982815 79983116 -104305546 + AluY SINE Alu 17 307 -4 23 54 0 0 chr4 79983178 79983215 -104305447 + AT_rich Low_complexity Low_complexity 1 37 0 299 269 235 0 chr4 79984045 79984164 -104304498 + MIR SINE MIR 59 205 -57 230 160 20 0 chr4 79984679 79984729 -104303933 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 502 254 29 7 chr4 79984729 79984867 -104303795 - L1ME3A LINE L1 -24 6146 6006 331 319 70 95 chr4 79985109 79985350 -104303312 - L2 LINE L2 0 3272 3038 1194 172 24 4 chr4 79985466 79985840 -104302822 + MSTB LTR MaLR 1 426 0 268 213 49 0 chr4 79986769 79986830 -104301832 + MIR SINE MIR 86 149 -113 234 0 0 0 chr4 79986868 79986894 -104301768 + (CAA)n Simple_repeat Simple_repeat 2 27 0 399 247 11 11 chr4 79986907 79987000 -104301662 + MIR SINE MIR 154 246 -16 2210 117 3 0 chr4 79987140 79987438 -104301224 + AluSx SINE Alu 3 301 -11 32 67 0 0 chr4 79988418 79988478 -104300184 + AT_rich Low_complexity Low_complexity 1 60 0 268 108 0 0 chr4 79989121 79989158 -104299504 + MER4D LTR ERV1 792 828 -75 23 0 0 0 chr4 79990703 79990726 -104297936 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 79991398 79991426 -104297236 + AT_rich Low_complexity Low_complexity 1 28 0 268 219 0 0 chr4 79993087 79993158 -104295504 + L1ME2 LINE L1 6092 6162 0 218 56 28 0 chr4 79993238 79993274 -104295388 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1805 154 10 7 chr4 79993281 79993580 -104295082 + AluJo SINE Alu 3 302 -10 30 0 0 0 chr4 79994246 79994276 -104294386 + AT_rich Low_complexity Low_complexity 1 30 0 25 51 0 0 chr4 79994517 79994556 -104294106 + AT_rich Low_complexity Low_complexity 1 39 0 675 196 7 78 chr4 79995090 79995273 -104293389 + MER69A DNA AcHobo 1 171 -6 441 298 43 50 chr4 79995525 79995715 -104292947 + MIR SINE MIR 42 225 -37 1376 117 39 39 chr4 79995715 79995839 -104292823 + MER30 DNA MER1_type 1 127 -103 2303 80 14 0 chr4 79995839 79996127 -104292535 - AluSp SINE Alu -20 293 2 1376 117 39 39 chr4 79996127 79996232 -104292430 + MER30 DNA MER1_type 126 230 0 441 298 43 50 chr4 79996232 79996264 -104292398 + MIR SINE MIR 225 256 -6 2604 162 45 11 chr4 79997293 79997830 -104290832 - L1MA7 LINE L1 -2 6289 5735 747 293 34 25 chr4 79997992 79998231 -104290431 - MIR SINE MIR -21 241 1 1029 253 56 11 chr4 80000432 80000701 -104287961 + LTR16A LTR ERVL 165 445 -5 21 0 0 0 chr4 80000887 80000908 -104287754 + AT_rich Low_complexity Low_complexity 1 21 0 760 258 119 13 chr4 80001635 80001937 -104286725 - MER46C DNA MER2_type -4 334 1 21 0 0 0 chr4 80002025 80002046 -104286616 + AT_rich Low_complexity Low_complexity 1 21 0 219 114 0 0 chr4 80002403 80002438 -104286224 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 309 281 62 38 chr4 80002861 80003021 -104285641 + MER5A DNA MER1_type 22 185 -4 * 738 204 25 6 chr4 80002879 80003036 -104285626 - MER5A DNA MER1_type -26 163 4 1880 168 0 16 chr4 80003346 80003649 -104285013 + AluSx SINE Alu 1 298 -14 269 361 147 22 chr4 80004494 80004862 -104283800 + L2 LINE L2 2858 3271 -1 233 364 80 50 chr4 80005505 80005744 -104282918 - L2 LINE L2 -2 3270 3025 2186 128 0 0 chr4 80006348 80006646 -104282016 - AluSx SINE Alu -14 298 1 1370 180 137 13 chr4 80007575 80007875 -104280787 + MER1B DNA MER1_type 1 337 0 871 221 93 32 chr4 80008356 80008636 -104280026 + L1ME3A LINE L1 5602 5898 -272 21 82 0 0 chr4 80008906 80008955 -104279707 + AT_rich Low_complexity Low_complexity 1 49 0 276 163 47 12 chr4 80009088 80009174 -104279488 + (TTATA)n Simple_repeat Simple_repeat 5 93 0 222 182 91 18 chr4 80009117 80009227 -104279435 + (TATAA)n Simple_repeat Simple_repeat 5 122 0 * 415 235 82 0 chr4 80009496 80009594 -104279068 + FLAM_A SINE Alu 18 123 -19 2870 3 0 0 chr4 80009603 80009912 -104278750 + AluYa5 SINE Alu 1 309 -2 1568 192 7 36 chr4 80011057 80011359 -104277303 + AluJb SINE Alu 1 293 -19 24 0 0 0 chr4 80011502 80011526 -104277136 + AT_rich Low_complexity Low_complexity 1 24 0 446 270 172 23 chr4 80011766 80011981 -104276681 - MIR SINE MIR -13 249 3 2360 98 0 6 chr4 80012595 80012913 -104275749 + THE1C LTR MaLR 10 325 -50 36 40 0 0 chr4 80012913 80012963 -104275699 + AT_rich Low_complexity Low_complexity 1 50 0 386 119 0 45 chr4 80012963 80013030 -104275632 + THE1C LTR MaLR 311 374 -1 380 264 92 37 chr4 80013262 80013425 -104275237 - MIR SINE MIR -13 249 78 312 322 125 13 chr4 80013479 80013631 -104275031 - MIR SINE MIR -73 189 21 1518 165 36 63 chr4 80013918 80014221 -104274441 - AluJb SINE Alu -17 295 1 21 36 0 0 chr4 80014326 80014354 -104274308 + AT_rich Low_complexity Low_complexity 1 28 0 1276 156 5 9 chr4 80014494 80014705 -104273957 + MER6B DNA MER2_type 1 210 0 1233 171 28 0 chr4 80016065 80016281 -104272381 + MER58A DNA MER1_type 2 223 -1 2045 108 0 51 chr4 80017263 80017577 -104271085 + AluSq SINE Alu 1 298 -15 23 0 0 0 chr4 80018348 80018371 -104270291 + AT_rich Low_complexity Low_complexity 1 23 0 189 188 0 116 chr4 80019285 80019354 -104269308 + MIR SINE MIR 92 152 -110 786 241 89 25 chr4 80019894 80020131 -104268531 - MIR SINE MIR -2 260 9 1988 145 0 0 chr4 80021334 80021665 -104266997 + AluSx SINE Alu 1 331 0 1017 181 0 6 chr4 80022604 80022775 -104265887 - AluSg/x SINE Alu -17 293 124 1532 178 25 25 chr4 80023292 80023568 -104265094 - AluJo SINE Alu -35 277 2 22 0 0 0 chr4 80023738 80023760 -104264902 + AT_rich Low_complexity Low_complexity 1 22 0 22486 28 0 0 chr4 80023874 80026578 -104262084 - L1PA3 LINE L1 -1042 5104 2401 7725 24 0 0 chr4 80026578 80027648 -104261014 + L1PA3 LINE L1 5086 6155 0 641 173 0 0 chr4 80027879 80027983 -104260679 + FLAM_A SINE Alu 28 131 -11 2773 63 0 8 chr4 80028215 80028579 -104260083 + L1PA8 LINE L1 5806 6166 -6 2298 53 17 30 chr4 80029602 80029904 -104258758 + AluY SINE Alu 1 298 -13 456 265 65 23 chr4 80030340 80030526 -104258136 + MIR SINE MIR 2 262 0 14296 130 18 39 chr4 80032053 80032826 -104255836 + Tigger1 DNA MER2_type 30 818 -1600 1615 188 13 3 chr4 80032826 80033135 -104255527 + AluJo SINE Alu 1 312 0 14296 130 18 39 chr4 80033135 80034419 -104254243 + Tigger1 DNA MER2_type 818 2128 -290 2394 49 0 26 chr4 80034419 80034744 -104253918 - AluY SINE Alu 0 311 1 14296 130 18 39 chr4 80034744 80034757 -104253905 + Tigger1 DNA MER2_type 2128 2140 -278 690 140 26 0 chr4 80034757 80034871 -104253791 - L1MA5 LINE L1 -5 6295 6179 14296 130 18 39 chr4 80034871 80035056 -104253606 + Tigger1 DNA MER2_type 2140 2234 -184 2348 61 3 3 chr4 80035056 80035350 -104253312 - AluY SINE Alu -17 294 1 14296 130 18 39 chr4 80035350 80035531 -104253131 + Tigger1 DNA MER2_type 2234 2417 -1 1702 202 0 7 chr4 80036158 80036460 -104252202 - AluJb SINE Alu -12 300 1 375 263 254 44 chr4 80036734 80036939 -104251723 + MIR SINE MIR 12 259 -3 218 361 48 0 chr4 80037007 80037090 -104251572 + MIR SINE MIR 28 114 -94 184 330 102 0 chr4 80038661 80038749 -104249913 + MIR SINE MIR 77 173 -89 2269 83 7 3 chr4 80038880 80039180 -104249482 - AluSq SINE Alu -12 301 1 1070 274 52 12 chr4 80040428 80040928 -104247734 + L1MEc LINE L1 844 1363 -5033 1040 253 105 32 chr4 80040929 80041439 -104247223 + L1M2 LINE L1 1543 2076 -4253 268 324 65 88 chr4 80041707 80041923 -104246739 + L2 LINE L2 3060 3270 -2 269 382 0 11 chr4 80042875 80042964 -104245698 - L2 LINE L2 -33 3239 3152 459 87 0 0 chr4 80043869 80043938 -104244724 + (CA)n Simple_repeat Simple_repeat 2 70 0 249 289 74 8 chr4 80044248 80044369 -104244293 - L1ME LINE L1 -301 5820 5692 1254 104 35 0 chr4 80044583 80044756 -104243906 - AluSg/x SINE Alu -16 296 118 2058 103 0 24 chr4 80045637 80045957 -104242705 + AluSg SINE Alu 1 313 0 919 161 49 6 chr4 80046548 80046710 -104241952 - FRAM SINE Alu -7 169 1 363 341 66 12 chr4 80046722 80046911 -104241751 - MIR3 SINE MIR -60 202 5 2643 106 8 0 chr4 80047531 80047917 -104240745 - L1PA8 LINE L1 -1 6171 5783 1017 190 69 40 chr4 80048378 80048625 -104240037 + AluJo SINE Alu 7 260 -52 354 45 0 0 chr4 80049016 80049060 -104239602 + (CA)n Simple_repeat Simple_repeat 1 44 0 2555 281 123 30 chr4 80049060 80049716 -104238946 + L2 LINE L2 1772 2365 -948 2203 116 0 0 chr4 80049716 80050010 -104238652 + AluSq SINE Alu 1 294 -19 339 25 0 0 chr4 80050013 80050053 -104238609 + (TA)n Simple_repeat Simple_repeat 1 40 0 303 28 0 0 chr4 80050052 80050088 -104238574 + (CA)n Simple_repeat Simple_repeat 2 37 0 * 2555 281 123 30 chr4 80050053 80050836 -104237826 + L2 LINE L2 2366 3299 -14 763 206 93 109 chr4 80051737 80051985 -104236677 + MIR SINE MIR 19 262 0 28 0 0 0 chr4 80053438 80053466 -104235196 + AT_rich Low_complexity Low_complexity 1 28 0 2003 112 0 0 chr4 80054056 80054324 -104234338 + AluSx SINE Alu 28 295 -17 231 36 0 0 chr4 80054329 80054357 -104234305 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 342 0 0 0 chr4 80054924 80054962 -104233700 + (CA)n Simple_repeat Simple_repeat 2 39 0 230 67 0 0 chr4 80055310 80055340 -104233322 + LTR8 LTR ERV1 549 578 -113 2146 117 7 3 chr4 80055359 80055668 -104232994 + AluSx SINE Alu 1 310 -2 1885 190 48 5 chr4 80055875 80056808 -104231854 + L1MB1 LINE L1 5115 6109 -59 483 186 51 17 chr4 80058472 80058590 -104230072 - FRAM SINE Alu -14 162 41 211 334 119 56 chr4 80058617 80058994 -104229668 - L2 LINE L2 -967 2347 1947 22 0 0 0 chr4 80059254 80059276 -104229386 + AT_rich Low_complexity Low_complexity 1 22 0 223 161 36 107 chr4 80059434 80059490 -104229172 + L2 LINE L2 3211 3262 -10 23 0 0 0 chr4 80060063 80060086 -104228576 + AT_rich Low_complexity Low_complexity 1 23 0 225 209 15 30 chr4 80060546 80060613 -104228049 - L1ME2 LINE L1 -102 6062 5997 2144 125 0 0 chr4 80060773 80061076 -104227586 + AluSx SINE Alu 3 305 -7 27 49 0 0 chr4 80061323 80061364 -104227298 + AT_rich Low_complexity Low_complexity 1 41 0 889 208 36 0 chr4 80061368 80061536 -104227126 - MER58B DNA MER1_type -1 340 167 28 71 0 0 chr4 80061684 80061740 -104226922 + AT_rich Low_complexity Low_complexity 1 56 0 2132 36 44 11 chr4 80062849 80063162 -104225500 - AluY SINE Alu 0 322 1 443 342 93 29 chr4 80063917 80064303 -104224359 + L2 LINE L2 2474 2884 -430 1570 186 3 51 chr4 80064451 80064763 -104223899 - AluJo SINE Alu -15 297 1 1679 209 148 29 chr4 80065749 80065925 -104222737 + L1MD2 LINE L1 5760 5914 -445 2227 121 3 29 chr4 80065925 80066271 -104222391 - MER1B DNA MER1_type 0 337 1 1679 209 148 29 chr4 80066271 80066621 -104222041 + L1MD2 LINE L1 5914 6349 -10 2293 95 3 0 chr4 80067242 80067537 -104221125 - AluSq SINE Alu -16 297 2 2101 93 0 51 chr4 80067547 80067859 -104220803 - AluY SINE Alu -15 296 1 207 184 0 0 chr4 80068912 80068950 -104219712 + (TG)n Simple_repeat Simple_repeat 1 38 0 2265 136 6 3 chr4 80070234 80070594 -104218068 + MER46B DNA MER2_type 1 236 0 1837 124 10 21 chr4 80071910 80072201 -104216461 - AluSx SINE Alu -24 288 1 201 162 0 0 chr4 80073238 80073275 -104215387 + A-rich Low_complexity Low_complexity 1 37 0 237 33 0 0 chr4 80073497 80073527 -104215135 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 321 321 101 13 chr4 80074520 80074679 -104213983 + L2 LINE L2 3141 3313 0 1984 133 3 23 chr4 80076288 80076589 -104212073 - AluSx SINE Alu -17 295 1 955 272 24 16 chr4 80076618 80076872 -104211790 - MIR SINE MIR -3 259 4 1369 121 280 0 chr4 80077073 80077355 -104211307 - MER46B DNA MER2_type 0 236 1 221 250 0 0 chr4 80077620 80077664 -104210998 + (CA)n Simple_repeat Simple_repeat 2 45 0 525 253 180 5 chr4 80077668 80077862 -104210800 + MIR SINE MIR 5 232 -30 1501 193 102 25 chr4 80078572 80078965 -104209697 - MER63B DNA MER1_type -8 428 6 1678 163 40 50 chr4 80079386 80079676 -104208986 + MER34B LTR ERV1 1 372 -193 2882 171 26 9 chr4 80079676 80080215 -104208447 + MER44D DNA MER2_type 1 603 -2 1678 163 40 50 chr4 80080215 80080408 -104208254 + MER34B LTR ERV1 372 565 0 2261 236 177 10 chr4 80080499 80081331 -104207331 - L1MC4 LINE L1 -3 8039 7069 497 185 100 39 chr4 80081341 80081471 -104207191 - L1MC4 LINE L1 -1123 6919 6782 664 300 61 20 chr4 80081611 80081858 -104206804 + MIR SINE MIR 6 262 0 26 30 0 0 chr4 80081873 80081906 -104206756 + AT_rich Low_complexity Low_complexity 1 33 0 293 326 83 23 chr4 80082150 80082282 -104206380 + MIR SINE MIR 96 235 -27 251 321 42 21 chr4 80083383 80083559 -104205103 - MIR SINE MIR -30 232 1 193 313 0 31 chr4 80083992 80084056 -104204606 - MIR SINE MIR -1 261 200 286 309 9 18 chr4 80084648 80084758 -104203904 + L2 LINE L2 2743 2851 -463 1430 152 45 76 chr4 80087712 80088002 -104200660 + AluJo SINE Alu 1 281 -31 186 43 0 0 chr4 80088005 80088028 -104200634 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2476 217 97 16 chr4 80088293 80089428 -104199234 + L1ME1 LINE L1 4646 5866 -300 1591 161 35 61 chr4 80089428 80089770 -104198892 + MER44D DNA MER2_type 1 603 -6 989 243 59 11 chr4 80089777 80090049 -104198613 + L1ME1 LINE L1 5875 6159 -7 223 254 0 0 chr4 80090217 80090272 -104198390 - MIR SINE MIR -111 151 97 226 240 31 83 chr4 80090326 80090422 -104198240 - MIR SINE MIR -56 206 116 806 131 85 46 chr4 80090649 80090802 -104197860 - AluJb SINE Alu -7 305 147 2174 124 18 12 chr4 80090978 80091309 -104197353 - MER2 DNA MER2_type -11 334 2 26 0 0 0 chr4 80091459 80091485 -104197177 + AT_rich Low_complexity Low_complexity 1 26 0 348 279 61 12 chr4 80092367 80092532 -104196130 - L1ME LINE L1 -437 5684 5512 925 202 176 17 chr4 80092649 80092887 -104195775 + AluJo SINE Alu 1 276 -36 360 64 0 0 chr4 80092889 80092936 -104195726 + (GGGA)n Simple_repeat Simple_repeat 3 49 0 1428 171 25 8 chr4 80093435 80093674 -104194988 + AluJo SINE Alu 1 243 -69 1497 80 10 25 chr4 80094425 80094665 -104193997 + AluSg/x SINE Alu 87 323 0 29 47 0 0 chr4 80094712 80094755 -104193907 + AT_rich Low_complexity Low_complexity 1 43 0 2125 160 14 3 chr4 80095019 80095381 -104193281 + MER47A DNA MER2_type 1 366 0 2263 90 3 3 chr4 80095721 80096021 -104192641 + AluSg1 SINE Alu 1 300 -9 21 0 0 0 chr4 80096106 80096127 -104192535 + AT_rich Low_complexity Low_complexity 1 21 0 5821 139 19 13 chr4 80096413 80097454 -104191208 + L1MA5 LINE L1 5254 6298 -2 1778 155 79 3 chr4 80098208 80098498 -104190164 + AluJb SINE Alu 1 312 0 426 88 0 0 chr4 80098498 80098566 -104190096 + (GAGAA)n Simple_repeat Simple_repeat 4 71 0 249 284 0 15 chr4 80099091 80099158 -104189504 - MIR3 SINE MIR -21 187 122 1896 126 10 17 chr4 80099179 80099472 -104189190 + AluSx SINE Alu 1 291 -21 347 360 134 6 chr4 80099758 80099930 -104188732 + MIR3 SINE MIR 6 199 -9 211 339 0 15 chr4 80100225 80100290 -104188372 + MIR SINE MIR 36 99 -109 299 192 135 29 chr4 80100669 80100773 -104187889 - MIR SINE MIR -27 235 121 1144 190 63 22 chr4 80100818 80101086 -104187576 - L1MB2 LINE L1 -2 6169 5891 32 43 0 0 chr4 80102108 80102154 -104186508 + AT_rich Low_complexity Low_complexity 1 46 0 303 346 38 8 chr4 80102197 80102330 -104186332 + MIR SINE MIR 71 207 -55 274 325 97 0 chr4 80102631 80102745 -104185917 - L2 LINE L2 -1 3271 3147 487 321 10 20 chr4 80102988 80103184 -104185478 - MIR SINE MIR 0 262 69 26 88 0 0 chr4 80104021 80104089 -104184573 + AT_rich Low_complexity Low_complexity 1 68 0 444 284 0 0 chr4 80104254 80104363 -104184299 + MER81 DNA DNA 6 114 0 2332 88 0 16 chr4 80104391 80104708 -104183954 + AluSx SINE Alu 1 312 0 1634 163 21 10 chr4 80105406 80105695 -104182967 - AluJo SINE Alu -20 292 1 226 246 58 94 chr4 80106325 80106463 -104182199 - L2 LINE L2 -231 3041 2909 2291 94 0 0 chr4 80107010 80107308 -104181354 + AluSx SINE Alu 1 298 -14 1664 101 4 35 chr4 80107361 80107618 -104181044 + AluY SINE Alu 55 303 -8 608 309 21 5 chr4 80107839 80108027 -104180635 - MIR SINE MIR -14 248 58 1476 179 39 59 chr4 80108215 80108522 -104180140 - AluJb SINE Alu -11 301 1 1427 122 12 35 chr4 80110163 80110417 -104178245 + L1MB1 LINE L1 5921 6168 0 310 267 42 79 chr4 80110799 80110964 -104177698 - L2 LINE L2 -129 3184 3026 303 288 45 0 chr4 80111073 80111184 -104177478 + L1MD3 LINE L1 7870 7985 -10 838 264 81 7 chr4 80111506 80111801 -104176861 + HAL1 LINE L1 62 378 -2129 1737 263 85 43 chr4 80111877 80112301 -104176361 + HAL1 LINE L1 507 911 -1596 2164 88 0 38 chr4 80112301 80112621 -104176041 + AluSc SINE Alu 2 309 0 1737 263 85 43 chr4 80112621 80113225 -104175437 + HAL1 LINE L1 911 1603 -904 550 279 151 0 chr4 80113879 80114058 -104174604 + HAL1 LINE L1 1666 1871 -636 180 0 0 0 chr4 80114385 80114405 -104174257 + (A)n Simple_repeat Simple_repeat 1 20 0 2082 114 7 14 chr4 80115135 80115432 -104173230 - AluSx SINE Alu -17 295 1 25 31 0 0 chr4 80115709 80115741 -104172921 + AT_rich Low_complexity Low_complexity 1 32 0 351 0 0 0 chr4 80115744 80115783 -104172879 + (T)n Simple_repeat Simple_repeat 1 39 0 27 0 0 0 chr4 80115990 80116017 -104172645 + AT_rich Low_complexity Low_complexity 1 27 0 2308 209 146 16 chr4 80116663 80117309 -104171353 - MER44D DNA MER2_type -3 602 1 1846 170 0 3 chr4 80117668 80117962 -104170700 - AluJb SINE Alu -19 293 1 2164 82 0 24 chr4 80118085 80118377 -104170285 - AluSq SINE Alu -28 285 1 899 313 66 44 chr4 80118765 80119289 -104169373 - L2 LINE L2 -1 3312 2782 1868 155 3 10 chr4 80119531 80119835 -104168827 + AluSx SINE Alu 1 302 -10 394 326 133 17 chr4 80119986 80120219 -104168443 - MIR SINE MIR 0 262 3 21 36 0 0 chr4 80120296 80120324 -104168338 + AT_rich Low_complexity Low_complexity 1 28 0 25 75 0 0 chr4 80121885 80121938 -104166724 + AT_rich Low_complexity Low_complexity 1 53 0 225 231 39 92 chr4 80122563 80122693 -104165969 + L2 LINE L2 1289 1411 -1903 348 267 82 7 chr4 80123040 80123175 -104165487 - MIR SINE MIR 0 262 118 21 0 0 0 chr4 80123324 80123345 -104165317 + AT_rich Low_complexity Low_complexity 1 21 0 356 239 18 18 chr4 80123430 80123539 -104165123 + HAL1 LINE L1 1236 1344 -1163 202 180 33 0 chr4 80123759 80123820 -104164842 + (CAGAGA)n Simple_repeat Simple_repeat 2 64 0 391 326 11 6 chr4 80123831 80124009 -104164653 + GA-rich Low_complexity Low_complexity 2 180 0 376 236 133 52 chr4 80124056 80124220 -104164442 + HAL1 LINE L1 2047 2243 -264 246 81 0 0 chr4 80124220 80124257 -104164405 + (TATG)n Simple_repeat Simple_repeat 3 39 0 376 236 133 52 chr4 80124257 80124363 -104164299 + HAL1 LINE L1 2243 2339 -168 233 169 31 31 chr4 80124408 80124473 -104164189 + HAL1 LINE L1 2443 2507 0 23 24 0 24 chr4 80124476 80124491 -104164171 + AT_rich Low_complexity Low_complexity 1 15 -25 2243 91 3 0 chr4 80124491 80124778 -104163884 - AluSq SINE Alu -25 288 1 23 24 0 24 chr4 80124778 80124803 -104163859 + AT_rich Low_complexity Low_complexity 15 40 0 1694 193 13 0 chr4 80125833 80126133 -104162529 + AluJb SINE Alu 2 305 -7 27 62 0 0 chr4 80126258 80126306 -104162356 + AT_rich Low_complexity Low_complexity 1 48 0 510 224 115 21 chr4 80126465 80126657 -104162005 - MER112 DNA MER1_type -37 223 14 1228 57 0 19 chr4 80127610 80127769 -104160893 + AluY SINE Alu 2 157 -154 3773 183 20 29 chr4 80127773 80128988 -104159674 - L1MA9 LINE L1 -319 5993 4619 2015 133 7 3 chr4 80128988 80129296 -104159366 + AluSx SINE Alu 1 309 -3 3773 183 20 29 chr4 80129296 80129544 -104159118 - L1MA9 LINE L1 -1693 4619 4370 199 293 134 24 chr4 80129554 80129636 -104159026 - MIR SINE MIR -86 122 32 1773 168 3 7 chr4 80129794 80130092 -104158570 - AluJo SINE Alu -15 297 1 1725 190 39 73 chr4 80130227 80130691 -104157971 + MER31B LTR ERV1 1 448 -18 1700 192 0 3 chr4 80130693 80130979 -104157683 + AluJb SINE Alu 3 287 -25 3658 122 55 18 chr4 80131159 80131775 -104156887 + MER51C LTR ERV1 1 639 -1 2421 77 0 13 chr4 80132793 80133105 -104155557 + AluSc SINE Alu 2 309 0 234 120 60 0 chr4 80134745 80134795 -104153867 + L1M3 LINE L1 5380 5432 -739 281 211 96 83 chr4 80134900 80135097 -104153565 + L1MC/D LINE L1 5640 5845 -318 1782 219 104 55 chr4 80135137 80135791 -104152871 + L1ME LINE L1 5 690 -5355 * 2896 218 111 56 chr4 80135787 80136533 -104152129 + L1ME LINE L1 1157 1860 -4704 1797 184 10 0 chr4 80136533 80136837 -104151825 - AluJb SINE Alu -5 307 1 2896 218 111 56 chr4 80136837 80137089 -104151573 + L1ME LINE L1 1860 2096 -4468 2242 95 0 3 chr4 80137089 80137383 -104151279 + AluSc SINE Alu 2 294 -15 2896 218 111 56 chr4 80137383 80138572 -104150090 + L1ME LINE L1 2096 3582 -2982 555 272 61 17 chr4 80138677 80138857 -104149805 + MIR SINE MIR 75 262 0 196 323 210 5 chr4 80139474 80139660 -104149002 + L2 LINE L2 2836 3059 -213 1291 164 151 4 chr4 80139674 80139912 -104148750 - AluJb SINE Alu -39 273 1 231 348 32 100 chr4 80139912 80140162 -104148500 + L2 LINE L2 3039 3271 -1 697 314 77 6 chr4 80140859 80141196 -104147466 + MARNA DNA Mariner 42 402 -184 233 374 51 35 chr4 80141280 80141534 -104147128 + L2 LINE L2 2661 2918 -396 863 272 98 18 chr4 80141812 80141922 -104146740 + L1ME LINE L1 5422 5522 -1058 204 40 0 0 chr4 80141922 80141947 -104146715 + (CA)n Simple_repeat Simple_repeat 2 26 0 863 272 98 18 chr4 80141947 80142249 -104146413 + L1ME LINE L1 5522 5799 -781 1943 187 136 11 chr4 80142249 80142698 -104145964 + MLT1D LTR MaLR 1 505 0 863 272 98 18 chr4 80142698 80142982 -104145680 + L1ME LINE L1 5799 6181 -399 483 18 0 0 chr4 80142984 80143040 -104145622 + (TA)n Simple_repeat Simple_repeat 2 57 0 2007 132 0 17 chr4 80143041 80143336 -104145326 - AluSx SINE Alu -22 290 1 196 336 76 42 chr4 80143736 80143855 -104144807 + L2 LINE L2 2922 3044 -228 1577 162 38 17 chr4 80143918 80144208 -104144454 + AluJo SINE Alu 1 296 -16 252 294 78 20 chr4 80144651 80144753 -104143909 + L2 LINE L2 3165 3272 0 25 51 0 0 chr4 80144818 80144857 -104143805 + AT_rich Low_complexity Low_complexity 1 39 0 1714 163 28 0 chr4 80145032 80145320 -104143342 - AluJo SINE Alu -16 296 1 23 0 0 0 chr4 80146969 80146992 -104141670 + AT_rich Low_complexity Low_complexity 1 23 0 229 296 81 46 chr4 80146992 80147299 -104141363 + L1ME LINE L1 4729 5046 -1100 2053 108 3 18 chr4 80147331 80147617 -104141045 - AluSx SINE Alu -29 283 2 333 0 0 0 chr4 80147644 80147681 -104140981 + (TG)n Simple_repeat Simple_repeat 2 38 0 238 279 134 48 chr4 80147865 80148134 -104140528 + L1ME LINE L1 5263 5554 -612 23 78 0 0 chr4 80148577 80148628 -104140034 + AT_rich Low_complexity Low_complexity 1 51 0 508 66 0 0 chr4 80148705 80148766 -104139896 - U6 snRNA snRNA -6 101 41 212 83 0 28 chr4 80148963 80148999 -104139663 + (GGAA)n Simple_repeat Simple_repeat 2 36 0 215 347 65 24 chr4 80149963 80150087 -104138575 - MIR SINE MIR -114 148 20 2495 185 6 31 chr4 80200370 80201083 -104087579 - L1M3 LINE L1 -407 5776 5075 3706 62 4 2 chr4 80201292 80201774 -104086888 + L1PA8 LINE L1 5690 6172 0 1214 153 71 46 chr4 80201858 80202140 -104086522 + AluY SINE Alu 4 292 -19 2065 282 5 2 chr4 80202460 80202878 -104085784 + L1P LINE L1 4637 5055 -1091 1153 167 5 10 chr4 80203006 80203210 -104085452 - MER6A DNA MER2_type -365 240 38 1875 140 24 3 chr4 80203211 80203503 -104085159 + AluSx SINE Alu 1 298 -14 235 229 16 0 chr4 80203555 80203616 -104085046 + Charlie1 DNA MER1_type 2308 2369 -392 7478 35 1 2 chr4 80203730 80204685 -104083977 - L1P LINE L1 -1602 4544 3591 3112 113 7 73 chr4 80204804 80205421 -104083241 + L1P LINE L1 391 966 -5180 489 34 0 0 chr4 80205987 80206046 -104082616 + (TTTTA)n Simple_repeat Simple_repeat 2 60 0 637 272 65 37 chr4 80206994 80207393 -104081269 - L1PBb LINE L1 -4945 1248 777 1797 221 92 26 chr4 80208164 80208826 -104079836 - L1M3 LINE L1 -1829 4317 3612 275 231 44 11 chr4 80208846 80208937 -104079725 + L1MC4a LINE L1 5888 5981 -1827 1441 183 4 4 chr4 80209437 80209677 -104078985 - AluSx SINE Alu -72 240 1 2806 161 42 6 chr4 80209782 80210305 -104078357 - MER34 LTR ERV1 0 542 1 3200 218 34 9 chr4 80210831 80211649 -104077013 + L1PA15-16 LINE L1 2077 2915 -3934 1627 144 15 8 chr4 80211847 80212111 -104076551 + AluSx SINE Alu 36 301 -11 6693 94 25 12 chr4 80212595 80213596 -104075066 - HERVL LTR ERVL -1310 4344 3331 1629 107 66 8 chr4 80213717 80213959 -104074703 - AluSx SINE Alu -50 262 7 1101 97 0 28 chr4 80214731 80214907 -104073755 + MER11B LTR ERVK 1066 1236 0 226 71 0 71 chr4 80214908 80214950 -104073712 - MSTC LTR MaLR -389 39 1 615 159 103 16 chr4 80214951 80215077 -104073585 - MLT1A1 LTR MaLR -228 137 1 3646 174 17 11 chr4 80215689 80216389 -104072273 - L1PA16 LINE L1 -16 6150 5447 702 187 18 6 chr4 80216398 80216564 -104072098 - L1PA16 LINE L1 -863 5283 5116 218 250 0 0 chr4 80217278 80217322 -104071340 + L2 LINE L2 3181 3224 -89 720 151 0 17 chr4 80217719 80217838 -104070824 + FLAM_C SINE Alu 2 118 -15 358 188 84 39 chr4 80218538 80218665 -104069997 - L1MC5 LINE L1 -973 7069 6839 403 221 250 0 chr4 80218667 80218771 -104069891 - FLAM_C SINE Alu -13 130 1 626 260 104 0 chr4 80218812 80218985 -104069677 - L1MC4a LINE L1 -1002 6806 6616 3128 146 39 3 chr4 80219196 80219792 -104068870 + L1P LINE L1 1888 2504 -3642 2554 215 40 8 chr4 80219902 80220443 -104068219 - L1 LINE L1 -1194 4952 4381 360 0 0 0 chr4 80220443 80220483 -104068179 + (TG)n Simple_repeat Simple_repeat 2 41 0 2554 215 40 8 chr4 80220483 80220657 -104068005 - L1 LINE L1 -1765 4381 4214 1533 116 49 5 chr4 80220658 80220882 -104067780 + AluSc SINE Alu 1 234 -75 7788 98 28 7 chr4 80220984 80222368 -104066294 + L1P3 LINE L1 4178 5585 -569 33 66 0 0 chr4 80223158 80223219 -104065443 + AT_rich Low_complexity Low_complexity 1 61 0 240 130 0 0 chr4 80223370 80223416 -104065246 + (G)n Simple_repeat Simple_repeat 1 46 0 415 85 17 0 chr4 80223494 80223553 -104065109 - Alu SINE Alu -250 60 1 3940 92 1 2 chr4 80223553 80224265 -104064397 - L1P3 LINE L1 -683 5489 4778 1177 58 0 0 chr4 80224380 80224534 -104064128 - L1PA7 LINE L1 -178 5976 5823 237 33 0 0 chr4 80224534 80224564 -104064098 + (TTTTA)n Simple_repeat Simple_repeat 3 32 0 2039 104 18 0 chr4 80224574 80224852 -104063810 - AluY SINE Alu -28 283 1 1299 119 36 47 chr4 80224852 80225105 -104063557 - Tigger2a DNA MER2_type -175 259 10 678 187 12 23 chr4 80225192 80225363 -104063299 + L1M4 LINE L1 5188 5356 -790 3267 258 29 15 chr4 80225500 80226578 -104062084 + L1PA15-16 LINE L1 1741 2833 -4016 2207 97 10 3 chr4 80226771 80227059 -104061603 + AluY SINE Alu 1 290 -21 26 0 0 0 chr4 80227068 80227094 -104061568 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr4 80227417 80227440 -104061222 + (TA)n Simple_repeat Simple_repeat 1 23 0 432 100 14 0 chr4 80227440 80227510 -104061152 - L1P5 LINE L1 -370 5781 5711 5132 227 13 8 chr4 80227533 80228854 -104059808 - L1 LINE L1 -810 5336 4009 6198 112 1 13 chr4 80228962 80229945 -104058717 - L1P LINE L1 -3701 2445 1475 5794 245 25 8 chr4 80230045 80231813 -104056849 - L1 LINE L1 -2127 4019 2222 11622 99 3 13 chr4 80231988 80233719 -104054943 - L1P LINE L1 -1974 4172 2459 432 0 0 0 chr4 80233721 80233769 -104054893 + (TA)n Simple_repeat Simple_repeat 2 49 0 3478 96 24 8 chr4 80233871 80234404 -104054258 + L1P3 LINE L1 1171 1712 -4749 1265 271 62 11 chr4 80234445 80235090 -104053572 + L1MD1 LINE L1 2758 3435 -2711 1038 230 18 10 chr4 80235090 80235373 -104053289 + L1MD1 LINE L1 4438 4716 -1430 192 40 0 0 chr4 80235563 80235588 -104053074 + (C)n Simple_repeat Simple_repeat 1 25 0 236 171 0 40 chr4 80235614 80235690 -104052972 + (CCA)n Simple_repeat Simple_repeat 2 74 0 242 154 46 34 chr4 80235725 80235900 -104052762 + (CCCA)n Simple_repeat Simple_repeat 3 179 0 204 122 0 0 chr4 80235926 80235967 -104052695 + (A)n Simple_repeat Simple_repeat 1 41 0 5069 172 36 12 chr4 80236352 80237738 -104050924 - L1MA4 LINE L1 -6 6294 4882 1463 213 48 58 chr4 80238396 80238501 -104050161 + L1ME LINE L1 4979 5084 -1082 2238 117 3 0 chr4 80238501 80238809 -104049853 + AluSx SINE Alu 1 309 -3 1463 213 48 58 chr4 80238809 80239408 -104049254 + L1ME LINE L1 5084 5665 -501 1215 203 9 75 chr4 80239408 80239729 -104048933 + AluJo SINE Alu 1 300 -12 1463 213 48 58 chr4 80239729 80239788 -104048874 + L1ME LINE L1 5665 5723 -443 270 56 0 0 chr4 80240649 80240685 -104047977 + (CA)n Simple_repeat Simple_repeat 2 37 0 514 169 11 0 chr4 80241229 80241318 -104047344 - Tigger5 DNA MER2_type 0 2323 2234 1087 67 7 0 chr4 80291320 80291470 -103997192 + L1M1 LINE L1 2241 2391 -5174 3379 130 87 25 chr4 80291814 80292414 -103996248 - L1PA16 LINE L1 -7 6159 5523 254 156 0 62 chr4 80294591 80294655 -103994007 + (TTA)n Simple_repeat Simple_repeat 1 60 0 290 286 120 52 chr4 80294658 80294850 -103993812 - MIR SINE MIR -6 256 52 4101 198 35 19 chr4 80296115 80297344 -103991318 + L1MD1 LINE L1 4830 6076 -166 873 196 34 0 chr4 80297345 80297598 -103991064 - L1MC2 LINE L1 -317 6027 5698 1002 136 23 0 chr4 80297612 80297788 -103990874 + L1MD1 LINE L1 6062 6241 -1 322 289 41 0 chr4 80298023 80298120 -103990542 + MIR SINE MIR 57 157 -105 2451 193 13 21 chr4 80298405 80298876 -103989786 - MER74A LTR ERVL 0 558 92 1371 142 0 0 chr4 80298980 80299192 -103989470 - L1M1 LINE L1 -647 5657 5446 4434 150 174 47 chr4 80299192 80300289 -103988373 + MER11B LTR ERVK 1 1236 0 7779 174 24 9 chr4 80300289 80301169 -103987493 - L1M1 LINE L1 -743 6822 5957 1983 208 49 7 chr4 80301169 80301578 -103987084 + MSTA LTR MaLR 1 426 -2 8611 190 26 7 chr4 80301580 80303199 -103985463 + MSTA-int LTR MaLR 1 1650 -1 2095 170 83 0 chr4 80303200 80303595 -103985067 + MSTA LTR MaLR 1 428 0 7779 174 24 9 chr4 80303595 80304430 -103984232 - L1M1 LINE L1 -1607 5958 5125 * 9879 213 83 35 chr4 80304429 80307091 -103981571 - L1M1 LINE L1 -4170 3395 224 771 286 85 14 chr4 80307196 80307559 -103981103 + HAL1 LINE L1 1247 1635 -872 2046 321 118 36 chr4 80310938 80311920 -103976742 + L2 LINE L2 82 983 -2331 1973 152 54 11 chr4 80311920 80312269 -103976393 + THE1B LTR MaLR 1 364 0 11234 101 12 6 chr4 80312269 80313837 -103974825 + THE1B-int LTR MaLR 1 1578 -2 2286 126 30 33 chr4 80313839 80314204 -103974458 + THE1B LTR MaLR 1 364 0 2046 321 118 36 chr4 80314204 80314533 -103974129 + L2 LINE L2 983 1504 -1810 1105 342 66 10 chr4 80314607 80315089 -103973573 + L2 LINE L2 2108 2616 -698 461 242 95 32 chr4 80315066 80315256 -103973406 + L2 LINE L2 3110 3311 -2 * 226 196 0 0 chr4 80315480 80315526 -103973136 + L1MC4 LINE L1 6648 6693 -1349 22 35 0 0 chr4 80315711 80315740 -103972922 + AT_rich Low_complexity Low_complexity 1 29 0 226 361 10 21 chr4 80316079 80316176 -103972486 + MIR SINE MIR 23 118 -90 483 224 185 5 chr4 80316455 80316660 -103972002 + MER33 DNA MER1_type 1 242 -82 247 338 17 82 chr4 80317554 80317785 -103970877 + L3 LINE CR1 676 891 -686 274 235 0 29 chr4 80318182 80318250 -103970412 - MER74A LTR ERVL -492 66 1 3068 232 59 14 chr4 80318685 80319954 -103968708 - L1MDa LINE L1 -2849 3691 2364 384 261 142 37 chr4 80319955 80320067 -103968595 - L1MDa LINE L1 -5769 771 641 1932 148 0 0 chr4 80320067 80320345 -103968317 - AluSx SINE Alu -6 306 29 384 261 142 37 chr4 80320345 80320366 -103968296 - L1MDa LINE L1 -5899 641 624 23 0 0 0 chr4 80320442 80320465 -103968197 + AT_rich Low_complexity Low_complexity 1 23 0 306 345 56 7 chr4 80320573 80320715 -103967947 + L2 LINE L2 2705 2853 -461 356 196 119 65 chr4 80320800 80320968 -103967694 - MER104 DNA MER2_type -3 177 1 524 296 77 64 chr4 80321201 80321630 -103967032 - L1ME3A LINE L1 -265 5897 5460 561 141 0 0 chr4 80321694 80321793 -103966869 - L1MA5A LINE L1 -3 6294 6196 320 236 0 45 chr4 80321857 80321946 -103966716 + MIR SINE MIR 170 254 -8 192 281 132 26 chr4 80322720 80322834 -103965828 - L3 LINE CR1 -11 1566 1441 225 280 0 0 chr4 80323036 80323086 -103965576 - L3 LINE CR1 -474 1103 1054 22 88 0 0 chr4 80323276 80323333 -103965329 + AT_rich Low_complexity Low_complexity 1 57 0 198 235 98 0 chr4 80323438 80323489 -103965173 + L2 LINE L2 3254 3309 -4 205 345 12 41 chr4 80323531 80323702 -103964960 + L2 LINE L2 2349 2514 -800 277 263 175 18 chr4 80324098 80324212 -103964450 - L2 LINE L2 -8 3264 3133 7938 141 14 35 chr4 80325391 80327180 -103961482 + L1PA14 LINE L1 10 1652 -4494 919 83 30 0 chr4 80327281 80327414 -103961248 + L1MA2 LINE L1 6168 6304 0 5805 180 235 24 chr4 80327461 80327528 -103961134 + L1PA14 LINE L1 2922 2974 -3187 1621 212 28 19 chr4 80327528 80327887 -103960775 - MLT1A1 LTR MaLR -1 364 3 5805 180 235 24 chr4 80327887 80330469 -103958193 + L1PA14 LINE L1 2974 6158 -3 3289 204 45 24 chr4 80330467 80331172 -103957490 + L1MB1 LINE L1 4549 5238 -930 * 297 0 0 0 chr4 80331172 80331205 -103957457 + (CA)n Simple_repeat Simple_repeat 2 34 0 3289 204 45 24 chr4 80331205 80331251 -103957411 + L1MB1 LINE L1 5238 5282 -886 2370 46 3 0 chr4 80331251 80331535 -103957127 - AluY SINE Alu -2 309 25 3289 204 45 24 chr4 80331535 80331654 -103957008 + L1MB1 LINE L1 5282 5455 -713 3206 113 16 32 chr4 80331654 80332159 -103956503 - LTR3b LTR ERVK 0 500 4 3117 200 33 6 chr4 80332159 80332860 -103955802 + L1MB1 LINE L1 5447 6166 -2 21 36 0 0 chr4 80333593 80333621 -103955041 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr4 80334116 80334155 -103954507 + AT_rich Low_complexity Low_complexity 1 39 0 2897 124 12 49 chr4 80334241 80334747 -103953915 - L1PA15 LINE L1 -4 6161 5675 3050 113 4 16 chr4 80334757 80335117 -103953545 - L1PB1 LINE L1 0 6151 5797 219 114 0 0 chr4 80335117 80335152 -103953510 + (TG)n Simple_repeat Simple_repeat 2 36 0 3050 113 4 16 chr4 80335152 80335277 -103953385 - L1PB1 LINE L1 -354 5797 5672 313 239 44 26 chr4 80335377 80335490 -103953172 - L1M1 LINE L1 -7438 127 13 * 6893 208 60 25 chr4 80335488 80338521 -103950141 - L1PA16 LINE L1 -11 7593 4450 2601 247 36 37 chr4 80338524 80338989 -103949673 - L1PA16 LINE L1 -4543 3038 2573 2064 144 33 22 chr4 80338989 80339349 -103949313 - THE1B LTR MaLR 0 364 1 2601 247 36 37 chr4 80339349 80339741 -103948921 - L1PA16 LINE L1 -5008 2573 2182 423 265 10 0 chr4 80339972 80340070 -103948592 - L1PA16 LINE L1 -5398 2183 2085 1328 336 33 24 chr4 80340226 80340803 -103947859 - L1PA16 LINE L1 -6203 1371 790 395 83 33 0 chr4 80340896 80340956 -103947706 - MSTA LTR MaLR 0 428 367 198 224 52 17 chr4 80340968 80341026 -103947636 + L2 LINE L2 2434 2493 -821 337 316 13 51 chr4 80341137 80341295 -103947367 + MIR SINE MIR 61 212 -50 222 37 0 0 chr4 80343225 80343252 -103945410 + (TTCC)n Simple_repeat Simple_repeat 1 27 0 461 362 71 37 chr4 80343890 80344409 -103944253 + L2 LINE L2 2354 2890 -424 193 350 0 0 chr4 80345544 80345604 -103943058 - L2 LINE L2 0 3313 3254 1014 269 16 69 chr4 80346786 80347221 -103941441 - MLT1J LTR MaLR 0 511 100 5973 162 39 4 chr4 80348271 80349951 -103938711 - L1PB1 LINE L1 0 6151 4388 504 0 0 0 chr4 80349951 80350007 -103938655 + (TG)n Simple_repeat Simple_repeat 2 57 0 5973 162 39 4 chr4 80350007 80350217 -103938445 - L1PB1 LINE L1 -1763 4388 4187 * 8172 93 7 5 chr4 80350210 80351410 -103937252 + L1P LINE L1 2924 4125 -2021 4541 203 14 1 chr4 80351407 80352354 -103936308 - L1PB1 LINE L1 -1950 4196 3238 * 1864 103 72 4 chr4 80352355 80352618 -103936044 + AluSc SINE Alu 11 291 -18 302 71 0 36 chr4 80352667 80352719 -103935943 + L1P5 LINE L1 5528 5569 -587 4543 171 53 30 chr4 80352901 80354114 -103934548 - L1MB3 LINE L1 -1 6182 4951 220 143 24 0 chr4 80355458 80355500 -103933162 + (TA)n Simple_repeat Simple_repeat 2 44 0 541 57 14 0 chr4 80355737 80355807 -103932855 + L1P2 LINE L1 5657 5727 -427 1786 111 3 77 chr4 80355954 80356252 -103932410 + AluSg SINE Alu 29 304 -6 7166 45 0 0 chr4 80357744 80358759 -103929903 - L1PA5 LINE L1 -5 6149 5141 19149 38 16 2 chr4 80358759 80361173 -103927489 + L1PA5 LINE L1 2663 5108 -1038 2173 102 3 7 chr4 80361263 80361558 -103927104 + AluSc SINE Alu 1 294 -15 193 375 45 11 chr4 80361698 80361786 -103926876 + MIR SINE MIR 38 128 -80 1271 198 25 4 chr4 80361902 80362139 -103926523 + MSTD LTR MaLR 1 242 -154 953 168 17 23 chr4 80362213 80362386 -103926276 + MSTD LTR MaLR 224 395 -1 2580 140 31 0 chr4 80362388 80362803 -103925859 - MSTA LTR MaLR 0 428 1 11135 218 25 32 chr4 80363771 80367241 -103921421 + L1PA16 LINE L1 2399 5831 -335 9961 92 9 2 chr4 80367242 80368589 -103920073 + L1P3 LINE L1 2 1358 -5098 1827 193 53 88 chr4 80368589 80369112 -103919550 + LTR22 LTR ERVK 1 505 -4 4790 132 6 0 chr4 80369119 80369808 -103918854 + HERVK22 LTR ERVK 3 695 -6142 183 129 0 0 chr4 80370074 80370105 -103918557 + (A)n Simple_repeat Simple_repeat 1 31 0 890 184 20 0 chr4 80370293 80370440 -103918222 + HERVK22 LTR ERVK 2327 2476 -4361 10644 122 34 0 chr4 80370441 80372171 -103916491 + HERVK22 LTR ERVK 3181 6837 0 819 151 196 46 chr4 80372171 80372390 -103916272 + LTR22 LTR ERVK 1 252 -257 1793 182 31 29 chr4 80372393 80372844 -103915818 + L1 LINE L1 4629 5080 -1066 869 161 7 0 chr4 80372834 80372983 -103915679 - L1 LINE L1 -2001 4145 3996 * 2875 122 19 12 chr4 80372986 80373587 -103915075 + L1P5 LINE L1 5082 5689 -462 25589 77 7 10 chr4 80373687 80378053 -103910609 + L1PA7 LINE L1 1808 6152 -2 854 201 17 11 chr4 80378123 80378297 -103910365 - FAM SINE Alu 0 175 1 4749 93 16 5 chr4 80378317 80378991 -103909671 + L1PA13 LINE L1 5482 6163 0 638 251 56 14 chr4 80378997 80379212 -103909450 - L1 LINE L1 -3384 2762 2539 217 233 0 0 chr4 80380027 80380070 -103908592 + GA-rich Low_complexity Low_complexity 3 45 0 2125 249 148 26 chr4 80380131 80381068 -103907594 - MER97b DNA MER1_type -1 1052 1 22 35 0 0 chr4 80381583 80381612 -103907050 + AT_rich Low_complexity Low_complexity 1 29 0 704 240 11 22 chr4 80381868 80382047 -103906615 - MER5B DNA MER1_type -1 177 1 1022 279 83 27 chr4 80382338 80382746 -103905916 + LTR16B LTR ERVL 34 464 0 273 218 96 103 chr4 80382769 80382925 -103905737 + MIR SINE MIR 101 255 -7 27 0 0 0 chr4 80383140 80383167 -103905495 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 31 chr4 80384318 80384335 -103904327 + AT_rich Low_complexity Low_complexity 1 18 -13 2119 132 3 0 chr4 80384335 80384639 -103904023 + AluSx SINE Alu 1 305 -7 21 0 0 31 chr4 80384639 80384653 -103904009 + AT_rich Low_complexity Low_complexity 18 31 0 2342 40 0 7 chr4 80387949 80388227 -103900435 - AluY SINE Alu -35 276 1 225 0 0 0 chr4 80388508 80388533 -103900129 + (TG)n Simple_repeat Simple_repeat 1 25 0 180 0 0 0 chr4 80388532 80388552 -103900110 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 878 195 59 6 chr4 80390044 80390213 -103898449 - AluJo SINE Alu -134 178 1 237 180 60 0 chr4 80390242 80390292 -103898370 - MLT1J2 LTR MaLR 0 450 398 759 271 64 10 chr4 80390361 80390564 -103898098 - MLT1I LTR MaLR -133 276 63 357 24 0 0 chr4 80390862 80390904 -103897758 + (CA)n Simple_repeat Simple_repeat 2 43 0 213 407 44 15 chr4 80391700 80391835 -103896827 + L2 LINE L2 3134 3272 0 303 324 66 7 chr4 80391861 80391997 -103896665 - MIR SINE MIR -56 206 63 491 264 35 17 chr4 80392531 80392762 -103895900 + L1MC5 LINE L1 7023 7255 -733 1205 180 66 132 chr4 80392780 80393201 -103895461 + L1MC5 LINE L1 7226 7544 -417 1572 170 35 0 chr4 80393201 80393484 -103895178 + L1PB4 LINE L1 5847 6139 -17 1205 180 66 132 chr4 80393484 80393822 -103894840 + L1MC5 LINE L1 7544 7903 -58 30 27 0 0 chr4 80394234 80394271 -103894391 + AT_rich Low_complexity Low_complexity 1 37 0 2430 75 21 3 chr4 80395551 80395885 -103892777 - L1PB1 LINE L1 -1 6150 5811 5039 171 27 10 chr4 80396732 80397988 -103890674 - L1MB3 LINE L1 -7 7595 6322 24 53 0 0 chr4 80398489 80398527 -103890135 + AT_rich Low_complexity Low_complexity 1 38 0 34 42 0 0 chr4 80398573 80398621 -103890041 + AT_rich Low_complexity Low_complexity 1 48 0 1610 153 0 0 chr4 80399064 80399318 -103889344 - MLT1B LTR MaLR -135 255 2 199 0 65 0 chr4 80399367 80399398 -103889264 + (CTTTA)n Simple_repeat Simple_repeat 2 34 0 397 345 34 38 chr4 80399415 80399650 -103889012 + L2 LINE L2 2513 2746 -568 465 370 89 34 chr4 80399778 80400102 -103888560 + L2 LINE L2 2915 3256 -16 21 0 0 0 chr4 80400253 80400274 -103888388 + AT_rich Low_complexity Low_complexity 1 21 0 9937 197 28 24 chr4 80400323 80400641 -103888021 - L1MB3 LINE L1 -1432 6133 5818 1547 167 96 37 chr4 80400641 80400995 -103887667 - THE1C LTR MaLR 0 375 1 9937 197 28 24 chr4 80400995 80403006 -103885656 - L1MB3 LINE L1 -1747 5818 3795 36329 94 9 13 chr4 80403017 80407301 -103881361 - L1PA6 LINE L1 -1 6153 1903 7378 40 1 2 chr4 80407301 80408768 -103879894 + L1PA4 LINE L1 4688 6153 -2 36329 94 9 13 chr4 80408768 80410654 -103878008 - L1PA6 LINE L1 -4251 1903 11 20358 159 28 19 chr4 80410661 80412148 -103876514 - L1MB3 LINE L1 -3752 3813 2341 2718 17 0 0 chr4 80412148 80412446 -103876216 - AluY SINE Alu -13 298 1 20358 159 28 19 chr4 80412446 80414730 -103873932 - L1MB3 LINE L1 -5224 2341 13 2046 251 95 44 chr4 80414982 80415121 -103873541 - L1MEc LINE L1 -3700 2726 2595 1276 192 31 55 chr4 80415121 80415413 -103873249 - AluJo SINE Alu -23 289 5 2046 251 95 44 chr4 80415413 80415462 -103873200 - L1MEc LINE L1 -3831 2595 2550 1865 151 3 7 chr4 80415462 80415747 -103872915 - AluY SINE Alu -27 284 1 2046 251 95 44 chr4 80415747 80416883 -103871779 - L1MEc LINE L1 -3876 2550 1374 8453 162 23 9 chr4 80417096 80417142 -103871520 + L1P4 LINE L1 1811 1855 -4291 2339 67 7 0 chr4 80417142 80417424 -103871238 + AluY SINE Alu 16 299 -12 8453 162 23 9 chr4 80417424 80418958 -103869704 + L1P4 LINE L1 1855 3413 -2733 1504 123 9 0 chr4 80418957 80419184 -103869478 + L1P4 LINE L1 5460 5688 -473 * 5964 226 28 11 chr4 80419180 80419694 -103868968 - L1MCc LINE L1 -2587 4354 3850 2171 108 7 0 chr4 80419694 80419989 -103868673 - AluSq SINE Alu -16 297 1 5964 226 28 11 chr4 80419989 80421224 -103867438 - L1MCc LINE L1 -3091 3850 2573 1354 43 0 0 chr4 80421225 80421388 -103867274 + L1P5 LINE L1 5497 5659 -492 334 266 86 8 chr4 80423314 80423442 -103865220 + L2 LINE L2 2333 2470 -844 535 151 217 0 chr4 80423468 80423574 -103865088 + MER94 DNA DNA 6 134 0 218 293 64 83 chr4 80423673 80423830 -103864832 + L2 LINE L2 2605 2758 -556 444 260 206 23 chr4 80424152 80424371 -103864291 + MIR SINE MIR 1 259 -3 305 308 83 33 chr4 80424391 80424511 -103864151 + L2 LINE L2 3143 3268 -4 2267 129 45 36 chr4 80424564 80424793 -103863869 + L1MB3 LINE L1 5731 5956 -227 1325 142 59 0 chr4 80424793 80425012 -103863650 + MER46A DNA MER2_type 1 232 -4 2267 129 45 36 chr4 80425012 80425230 -103863432 + L1MB3 LINE L1 5956 6182 -1 2144 101 7 0 chr4 80425743 80426020 -103862642 - AluSc SINE Alu -30 279 1 422 298 60 13 chr4 80426542 80426693 -103861969 - MER103 DNA DNA -6 160 3 194 357 34 65 chr4 80427966 80428229 -103860433 - L2 LINE L2 -600 2714 2460 2874 218 111 32 chr4 80428426 80429249 -103859413 + Charlie1a DNA MER1_type 7 894 -561 657 264 32 22 chr4 80429258 80429535 -103859127 - L1MCc LINE L1 -5299 1642 1363 * 4141 194 50 7 chr4 80429530 80431150 -103857512 - L1MB1 LINE L1 -5 6399 4714 466 124 21 10 chr4 80431163 80431260 -103857402 - L1MA4A LINE L1 -7 6296 6199 322 255 68 0 chr4 80431270 80431431 -103857231 - L1MB1 LINE L1 -4047 2337 2166 2153 104 3 0 chr4 80431449 80431736 -103856926 - AluSc SINE Alu -7 302 15 1959 219 82 66 chr4 80431736 80432633 -103856029 - L1MB1 LINE L1 -4516 1787 800 330 311 25 42 chr4 80432828 80432947 -103855715 - L1M3de LINE L1 -5252 639 523 441 177 51 13 chr4 80433034 80433113 -103855549 - MER1B DNA MER1_type 0 339 258 1156 170 0 53 chr4 80433113 80433319 -103855343 - MER1B DNA MER1_type -91 206 12 1064 314 18 29 chr4 80433319 80433704 -103854958 - L1M3de LINE L1 -5509 382 2 3271 277 106 34 chr4 80433707 80434964 -103853698 - L1MCc LINE L1 -5047 1376 30 2134 166 53 78 chr4 80434967 80435553 -103853109 + Charlie1a DNA MER1_type 885 1455 0 223 368 114 15 chr4 80435554 80435826 -103852836 - L2 LINE L2 -1051 2263 1965 295 354 8 16 chr4 80436969 80437096 -103851566 + L2 LINE L2 2942 3067 -246 243 0 0 0 chr4 80438045 80438072 -103850590 + (TG)n Simple_repeat Simple_repeat 1 27 0 532 289 36 0 chr4 80438324 80438490 -103850172 + MIR SINE MIR 47 218 -44 691 140 0 9 chr4 80438499 80438613 -103850049 - MSTA LTR MaLR -315 113 1 229 288 29 79 chr4 80438614 80438753 -103849909 + HAL1 LINE L1 811 942 -1565 245 397 35 9 chr4 80439816 80439932 -103848730 + L2 LINE L2 3154 3272 0 2018 129 0 7 chr4 80440770 80441065 -103847597 + AluSx SINE Alu 1 293 -19 450 94 42 8 chr4 80441651 80441728 -103846934 - THE1C LTR MaLR 0 428 283 409 97 16 0 chr4 80441729 80441791 -103846871 + AluSg SINE Alu 10 72 -238 1602 119 0 0 chr4 80441888 80442107 -103846555 + AluSg SINE Alu 62 280 -30 1468 146 73 33 chr4 80442130 80442431 -103846231 - THE1C LTR MaLR -62 313 1 489 318 138 28 chr4 80442835 80443414 -103845248 + HAL1 LINE L1 1253 1895 -612 1732 174 10 7 chr4 80443432 80443736 -103844926 + AluJb SINE Alu 1 305 -7 226 267 33 22 chr4 80444124 80444214 -103844448 + HAL1b LINE L1 746 836 -512 309 270 75 69 chr4 80444228 80444402 -103844260 + HAL1 LINE L1 2264 2438 -69 1531 224 111 43 chr4 80444474 80444960 -103843702 + MLT2B1 LTR ERVL 2 520 0 30 100 0 0 chr4 80445091 80445191 -103843471 + AT_rich Low_complexity Low_complexity 1 100 0 10018 214 47 16 chr4 80446560 80450121 -103838541 + L1PA16 LINE L1 2387 6059 -107 9718 128 14 41 chr4 80450121 80451766 -103836896 + Tigger1 DNA MER2_type 819 2418 0 22 0 0 0 chr4 80452160 80452182 -103836480 + AT_rich Low_complexity Low_complexity 1 22 0 1256 206 64 9 chr4 80452891 80453217 -103835445 + MER2 DNA MER2_type 1 344 0 1578 187 23 23 chr4 80454065 80454407 -103834255 - L1MD3 LINE L1 -12 7983 7642 3306 188 87 85 chr4 80454462 80455325 -103833337 + MER21A LTR ERV1 39 903 -28 225 0 0 0 chr4 80458418 80458443 -103830219 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 315 0 0 0 chr4 80458442 80458477 -103830185 + (TG)n Simple_repeat Simple_repeat 2 36 0 948 285 113 23 chr4 80459289 80459769 -103828893 + MLT1H LTR MaLR 22 595 0 5275 50 7 3 chr4 80459897 80460572 -103828090 + L1PA7 LINE L1 5477 6154 0 2303 80 0 10 chr4 80460601 80460901 -103827761 - AluY SINE Alu -14 297 1 205 373 149 8 chr4 80461939 80462073 -103826589 + MIR3 SINE MIR 16 168 -40 2283 226 117 30 chr4 80463127 80463968 -103824694 + L1M4c LINE L1 540 1453 -4931 2136 197 27 5 chr4 80463975 80464422 -103824240 - L1PA16 LINE L1 -2271 3875 3419 6451 189 32 11 chr4 80464424 80466142 -103822520 + L1PA16 LINE L1 3884 5634 -532 1296 171 8 0 chr4 80466242 80466476 -103822186 + L1PA16 LINE L1 5917 6152 -14 1063 216 65 26 chr4 80466478 80466566 -103822096 + L1M4c LINE L1 1435 1518 -4866 1130 188 31 0 chr4 80466566 80466795 -103821867 + MER46A DNA MER2_type 1 236 0 1063 216 65 26 chr4 80466795 80467012 -103821650 + L1M4c LINE L1 1518 1752 -4632 1486 180 13 6 chr4 80467076 80467387 -103821275 - L1 LINE L1 -2649 3497 3185 1222 211 23 6 chr4 80467386 80467787 -103820875 + L1M4c LINE L1 1731 2233 -4151 * 1343 184 15 8 chr4 80467806 80468073 -103820589 + L1MB3 LINE L1 5911 6179 -4 23 0 0 0 chr4 80468516 80468539 -103820123 + AT_rich Low_complexity Low_complexity 1 23 0 717 288 98 28 chr4 80468615 80469015 -103819647 + MLT1J1 LTR MaLR 17 444 -2 1609 242 3 6 chr4 80469109 80469468 -103819194 + L1MA9 LINE L1 1 358 -6672 572 146 49 0 chr4 80469475 80469598 -103819064 + L1MA8 LINE L1 5168 5296 -850 321 263 75 15 chr4 80469578 80469711 -103818951 + L1MA9 LINE L1 1353 1493 -5537 * 1963 192 35 115 chr4 80469732 80470529 -103818133 + L1MA9 LINE L1 3581 4313 -2793 * 3609 185 51 25 chr4 80470517 80470922 -103817740 + L1MA9 LINE L1 5850 6243 -1029 3877 39 0 0 chr4 80470922 80471390 -103817272 + L1PA7 LINE L1 5674 6141 -13 3609 185 51 25 chr4 80471390 80471839 -103816823 + L1MA9 LINE L1 6243 6752 -520 234 0 0 0 chr4 80471839 80471865 -103816797 + (TC)n Simple_repeat Simple_repeat 2 27 0 3609 185 51 25 chr4 80471865 80472192 -103816470 + L1MA9 LINE L1 6752 7069 -203 705 218 0 8 chr4 80472192 80472325 -103816337 - MER8 DNA MER2_type 0 239 108 676 191 6 19 chr4 80472331 80472488 -103816174 + L1MA9 LINE L1 7076 7230 -42 1320 135 39 0 chr4 80472510 80472718 -103815944 + L1MA8 LINE L1 5430 5645 -667 1561 157 46 11 chr4 80472719 80473000 -103815662 - Tigger3b DNA MER2_type 0 1231 941 1223 183 56 32 chr4 80473001 80473114 -103815548 + AluJo SINE Alu 1 110 -202 209 57 29 0 chr4 80473114 80473149 -103815513 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 1223 183 56 32 chr4 80473149 80473319 -103815343 + AluJo SINE Alu 110 291 -21 1045 194 140 29 chr4 80473319 80473633 -103815029 + L1ME3A LINE L1 5813 6161 -9 5226 131 54 9 chr4 80473648 80474562 -103814100 - Tigger3b DNA MER2_type -275 956 2 1367 191 130 9 chr4 80474562 80474892 -103813770 + L1MA8 LINE L1 5644 6013 -278 485 118 21 43 chr4 80474894 80474945 -103813717 + L1MA9 LINE L1 6217 6267 -45 1615 183 96 3 chr4 80474945 80475279 -103813383 + MLT1A1 LTR MaLR 1 365 0 485 118 21 43 chr4 80475279 80475320 -103813342 + L1MA9 LINE L1 6267 6307 -5 182 336 118 0 chr4 80475516 80475626 -103813036 + L2 LINE L2 3191 3313 0 189 0 0 0 chr4 80476521 80476542 -103812120 + (TA)n Simple_repeat Simple_repeat 2 22 0 4437 163 13 16 chr4 80476542 80477363 -103811299 - L1MA7 LINE L1 -42 6249 5431 234 176 0 0 chr4 80477362 80477413 -103811249 - L1MEc LINE L1 -4000 2396 2346 * 1424 276 74 19 chr4 80477412 80478269 -103810393 - L1MEc LINE L1 -5326 1070 15 899 117 77 0 chr4 80478364 80478530 -103810132 - L1P2 LINE L1 -570 5584 5402 2880 215 44 22 chr4 80478561 80479484 -103809178 - L1M2 LINE L1 -5906 1303 1 266 347 130 63 chr4 80480855 80481155 -103807507 + L2 LINE L2 2953 3272 0 266 381 0 9 chr4 80481784 80481889 -103806773 - MIR SINE MIR -58 150 47 322 172 18 31 chr4 80482740 80482903 -103805759 + (TA)n Simple_repeat Simple_repeat 1 161 0 2803 234 19 27 chr4 80483784 80484527 -103804135 - L1ME1 LINE L1 -5 6161 5425 10041 202 45 9 chr4 80484551 80487072 -103801590 - L1PB2 LINE L1 -8 6859 4430 2441 82 0 3 chr4 80487072 80487378 -103801284 - AluSp SINE Alu -8 305 1 10041 202 45 9 chr4 80487378 80489711 -103798951 - L1PB2 LINE L1 -2437 4430 1845 1957 164 38 0 chr4 80489711 80490053 -103798609 - THE1A LTR MaLR 0 355 1 10744 113 17 1 chr4 80490057 80491608 -103797054 - THE1A-int LTR MaLR -4 1576 1 1855 157 40 57 chr4 80491608 80491978 -103796684 - THE1B LTR MaLR 0 364 1 352 330 0 11 chr4 80492135 80492226 -103796436 - MIR SINE MIR -161 101 12 195 273 18 18 chr4 80492277 80492332 -103796330 + MIR SINE MIR 204 258 -4 314 261 104 17 chr4 80492782 80492897 -103795765 - MER91C DNA MER1_type -11 129 5 226 239 22 0 chr4 80493326 80493372 -103795290 + L2 LINE L2 3140 3186 -86 21 36 0 0 chr4 80493901 80493929 -103794733 + AT_rich Low_complexity Low_complexity 1 28 0 1353 168 0 0 chr4 80494744 80494964 -103793698 - HUERS-P2 LTR ERV1 -5056 2481 2262 3576 187 34 41 chr4 80495269 80497009 -103791653 - HUERS-P2 LTR ERV1 -393 4824 282 976 263 56 56 chr4 80497106 80497448 -103791214 - HUERS-P2 LTR ERV1 -2546 542 201 2896 128 94 2 chr4 80497544 80498003 -103790659 - MER61D LTR ERV1 0 501 1 977 254 50 82 chr4 80498134 80498599 -103790063 + MLT1J2 LTR MaLR 1 450 0 232 393 16 11 chr4 80498688 80498879 -103789783 + MER117 DNA MER1_type 6 197 0 285 56 0 0 chr4 80499131 80499167 -103789495 + tRNA-Glu-GAG tRNA tRNA 1 36 -39 603 233 0 33 chr4 80499222 80499372 -103789290 + L2 LINE L2 3169 3313 0 373 233 146 0 chr4 80499913 80500016 -103788646 + MER45A DNA AcHobo 61 178 0 22748 43 3 6 chr4 80501298 80504931 -103783731 + L1PA5 LINE L1 2521 6148 -6 2181 111 3 0 chr4 80506109 80506406 -103782256 + AluSc SINE Alu 1 298 -11 332 78 0 0 chr4 80508342 80508393 -103780269 - L1PA4 LINE L1 -2 6153 6103 368 225 140 79 chr4 80508465 80508780 -103779882 - HAL1b LINE L1 -49 1299 966 490 306 74 55 chr4 80509039 80509350 -103779312 - HAL1b LINE L1 -1031 317 1 2832 160 142 7 chr4 80509639 80510215 -103778447 + L1PBa LINE L1 151 804 -6059 592 222 88 6 chr4 80511602 80511773 -103776889 - MIR SINE MIR -29 233 49 277 146 41 49 chr4 80514295 80514418 -103774244 + (TTATA)n Simple_repeat Simple_repeat 3 124 0 632 358 46 20 chr4 80514798 80515345 -103773317 + L1ME1 LINE L1 91 651 -5745 406 216 45 18 chr4 80515388 80515499 -103773163 + L1PB4 LINE L1 6041 6154 -2 362 291 52 0 chr4 80515506 80515716 -103772946 + L1ME1 LINE L1 3727 3947 -2268 2340 268 49 19 chr4 80515746 80516519 -103772143 + L1ME1 LINE L1 5435 6230 -5 2137 87 69 0 chr4 80517886 80518162 -103770500 - AluSg SINE Alu -15 295 1 576 311 72 0 chr4 80519336 80519545 -103769117 - MIR SINE MIR -37 225 2 661 152 0 0 chr4 80520534 80520633 -103768029 - MSTA LTR MaLR -2 426 328 918 120 148 0 chr4 80520653 80520795 -103767867 - MSTA LTR MaLR -265 163 1 2237 158 27 52 chr4 80520912 80521355 -103767307 + MSTB1 LTR MaLR 1 432 0 186 279 88 0 chr4 80521534 80521602 -103767060 + L3 LINE CR1 1317 1390 -187 1443 191 32 21 chr4 80522288 80522570 -103766092 - AluJb SINE Alu -13 299 15 234 207 0 0 chr4 80523149 80523207 -103765455 + (CA)n Simple_repeat Simple_repeat 2 59 0 914 253 91 36 chr4 80523350 80523711 -103764951 + L1ME4a LINE L1 5582 5977 -144 2282 107 0 7 chr4 80523711 80524019 -103764643 + AluSq SINE Alu 1 306 -7 914 253 91 36 chr4 80524019 80524132 -103764530 + L1ME4a LINE L1 5977 6082 -39 7418 34 0 0 chr4 80524400 80525337 -103763325 - L1PA4 LINE L1 0 6155 5219 180 0 0 0 chr4 80526010 80526030 -103762632 + (TTA)n Simple_repeat Simple_repeat 2 21 0 8629 164 5 15 chr4 80526034 80528683 -103759979 - L1PB1 LINE L1 -11 6856 4227 270 81 0 0 chr4 80528721 80528758 -103759904 + (T)n Simple_repeat Simple_repeat 1 37 0 2616 61 0 3 chr4 80528758 80529086 -103759576 - LTR17 LTR ERV1 -453 327 1 2426 62 0 0 chr4 80529086 80529378 -103759284 - HERV17 LTR ERV1 0 8626 8335 287 77 0 0 chr4 80529368 80529407 -103759255 - HERV17 LTR ERV1 -1078 7548 7510 * 6449 48 3 0 chr4 80529395 80530172 -103758490 - HERV17 LTR ERV1 -2602 6024 5246 4713 41 0 2 chr4 80530272 80530831 -103757831 - HERV17 LTR ERV1 -5639 2987 2430 495 79 0 0 chr4 80530816 80530879 -103757783 - HERV17 LTR ERV1 -6612 2014 1952 * 291 139 0 0 chr4 80530866 80530909 -103757753 - HERV17 LTR ERV1 -8583 43 1 * 2083 101 48 18 chr4 80530909 80531379 -103757283 - LTR17 LTR ERV1 0 780 247 10623 143 91 9 chr4 80531382 80534356 -103754306 - L1PB1 LINE L1 -2647 4215 998 251 263 50 61 chr4 80535453 80535552 -103753110 - MIR SINE MIR -30 232 135 29 60 0 0 chr4 80536032 80536082 -103752580 + AT_rich Low_complexity Low_complexity 1 50 0 22 35 0 0 chr4 80536350 80536379 -103752283 + AT_rich Low_complexity Low_complexity 1 29 0 10169 143 46 5 chr4 80536506 80538412 -103750250 - Tigger1 DNA MER2_type 0 2418 400 2758 187 17 62 chr4 80538412 80539053 -103749609 - LTR9 LTR ERV1 0 612 1 10169 143 46 5 chr4 80539053 80539471 -103749191 - Tigger1 DNA MER2_type -2018 400 1 250 316 38 61 chr4 80539998 80540281 -103748381 + MLT1J2 LTR MaLR 65 393 -57 199 315 45 45 chr4 80540651 80540762 -103747900 + L2 LINE L2 2212 2322 -992 192 182 0 0 chr4 80541875 80541919 -103746743 + CT-rich Low_complexity Low_complexity 3 46 0 185 271 85 0 chr4 80541943 80542002 -103746660 - L2 LINE L2 -1 3312 3249 257 325 50 17 chr4 80542615 80542735 -103745927 - L2 LINE L2 -9 3304 3181 1005 48 0 0 chr4 80542740 80542865 -103745797 - L1PA7 LINE L1 -3 6151 6027 1501 176 70 3 chr4 80543135 80543464 -103745198 - L1MD3 LINE L1 0 7995 7645 1638 215 82 29 chr4 80543531 80544020 -103744642 - LTR48B LTR ERV1 0 644 130 475 323 122 25 chr4 80544179 80544541 -103744121 - MLT1J LTR MaLR -103 408 12 30 27 0 0 chr4 80545498 80545535 -103743127 + AT_rich Low_complexity Low_complexity 1 37 0 265 401 95 0 chr4 80546027 80546174 -103742488 - MER91A DNA MER1_type 0 196 36 1728 133 118 13 chr4 80546523 80546838 -103741824 + L1PA16 LINE L1 5816 6163 -3 303 28 0 0 chr4 80547077 80547113 -103741549 + (TC)n Simple_repeat Simple_repeat 1 36 0 488 249 149 17 chr4 80548822 80549003 -103739659 + L2 LINE L2 604 808 -2506 2026 187 71 10 chr4 80549004 80549497 -103739165 + Charlie1b DNA MER1_type 1 523 0 541 286 145 8 chr4 80549551 80549806 -103738856 - MER5C DNA MER1_type -34 290 1 * 1035 267 59 61 chr4 80549806 80550265 -103738397 + L2 LINE L2 802 1259 -2055 518 316 95 28 chr4 80550288 80550573 -103738089 - MLT1I LTR MaLR -21 388 85 3086 305 101 14 chr4 80550679 80551990 -103736672 + L2 LINE L2 1268 2693 -621 375 304 16 8 chr4 80552043 80552168 -103736494 + MER94 DNA DNA 7 132 -2 223 333 46 37 chr4 80552573 80552681 -103735981 - L2 LINE L2 -43 3229 3121 682 303 54 12 chr4 80552785 80553026 -103735636 - MIR SINE MIR -10 252 2 22 0 0 0 chr4 80553329 80553351 -103735311 + AT_rich Low_complexity Low_complexity 1 22 0 1161 240 48 77 chr4 80553645 80554229 -103734433 - Charlie7 DNA MER1_type -122 2490 1924 1055 209 62 16 chr4 80554230 80554550 -103734112 - L1MC3 LINE L1 -1 7784 7450 3850 271 72 23 chr4 80554566 80554652 -103734010 - Charlie7 DNA MER1_type -675 1937 1857 8681 52 28 0 chr4 80554652 80556507 -103732155 + L1PA5 LINE L1 4272 6147 -7 3850 271 72 23 chr4 80556507 80557996 -103730666 - Charlie7 DNA MER1_type -755 1857 284 1560 216 41 34 chr4 80558053 80558465 -103730197 + MLT1C LTR MaLR 53 467 0 313 282 143 46 chr4 80558510 80558726 -103729936 - Charlie7 DNA MER1_type -2374 238 2 811 225 28 11 chr4 80559060 80559242 -103729420 - AluJo SINE Alu -6 306 122 2196 178 37 32 chr4 80559468 80559929 -103728733 + MLT1C LTR MaLR 1 463 -4 801 270 50 8 chr4 80559940 80560181 -103728481 + MIR SINE MIR 12 262 0 236 284 126 16 chr4 80560252 80560379 -103728283 - L1ME LINE L1 -400 5721 5581 2524 24 7 7 chr4 80561149 80561441 -103727221 + AluY SINE Alu 13 304 -7 396 0 0 0 chr4 80561876 80561920 -103726742 + (CA)n Simple_repeat Simple_repeat 2 45 0 1641 179 25 57 chr4 80562601 80563004 -103725658 + MLT1B LTR MaLR 1 390 0 202 329 24 47 chr4 80563225 80563310 -103725352 + MIR SINE MIR 8 90 -172 4305 159 68 10 chr4 80563563 80564380 -103724282 + MER6 DNA MER2_type 1 865 0 319 222 0 0 chr4 80566843 80566933 -103721729 + (TA)n Simple_repeat Simple_repeat 2 91 0 701 189 8 8 chr4 80566935 80567062 -103721600 + MER6 DNA MER2_type 130 256 -609 185 62 0 31 chr4 80567083 80567115 -103721547 + (TAA)n Simple_repeat Simple_repeat 1 31 0 336 319 44 9 chr4 80567216 80567329 -103721333 - MIR SINE MIR -71 137 21 212 210 0 16 chr4 80568185 80568247 -103720415 + (TG)n Simple_repeat Simple_repeat 2 62 0 448 179 0 0 chr4 80568553 80568628 -103720034 - LTR40b LTR ERVL 0 462 388 1066 213 47 9 chr4 80568628 80568839 -103719823 - MLT1A2 LTR MaLR 0 374 156 1593 173 139 23 chr4 80568857 80569209 -103719453 - MSTD LTR MaLR 0 396 4 1060 279 7 27 chr4 80569404 80569701 -103718961 - LTR40b LTR ERVL -171 291 1 608 302 139 32 chr4 80570140 80570607 -103718055 + LTR33 LTR ERVL 5 521 0 417 316 190 0 chr4 80570666 80570840 -103717822 - MIR SINE MIR -51 211 5 1738 5 0 0 chr4 80571446 80571642 -103717020 - L1HS LINE L1 -212 5943 5748 * 1840 10 0 0 chr4 80571640 80571849 -103716813 + L1HS LINE L1 5945 6153 -2 264 154 0 0 chr4 80571851 80571903 -103716759 + A-rich Low_complexity Low_complexity 1 52 0 207 69 0 0 chr4 80572479 80572508 -103716154 + (A)n Simple_repeat Simple_repeat 1 29 0 14201 147 17 9 chr4 80573364 80575760 -103712902 + Tigger1 DNA MER2_type 2 2417 -1 360 261 116 63 chr4 80575873 80576080 -103712582 - LTR33 LTR ERVL -303 218 1 2060 153 46 3 chr4 80576170 80576516 -103712146 + MSTB LTR MaLR 1 361 -65 1223 180 36 5 chr4 80576521 80576743 -103711919 - AluJo SINE Alu -21 291 63 447 127 14 0 chr4 80576745 80576816 -103711846 + MSTB LTR MaLR 355 426 0 268 333 62 16 chr4 80577241 80577370 -103711292 + MIR SINE MIR 13 147 -115 372 317 35 7 chr4 80577401 80577546 -103711116 - MIR SINE MIR 0 262 114 379 197 127 63 chr4 80578262 80578326 -103710336 + L1ME2 LINE L1 6013 6072 -92 897 226 6 0 chr4 80578326 80578503 -103710159 - MER45A DNA AcHobo 0 178 1 379 197 127 63 chr4 80578503 80578580 -103710082 + L1ME2 LINE L1 6072 6163 -1 2048 127 0 0 chr4 80578855 80579146 -103709516 + AluSx SINE Alu 1 291 -21 570 75 0 0 chr4 80579673 80579753 -103708909 + L1PB3 LINE L1 6069 6148 -6 196 414 25 31 chr4 80579890 80580052 -103708610 + L3 LINE CR1 1416 1576 -1 323 243 78 10 chr4 80583023 80583126 -103705536 + MER112 DNA MER1_type 1 110 -150 242 333 105 20 chr4 80583234 80583387 -103705275 - MIR3 SINE MIR -23 185 20 350 344 68 18 chr4 80584017 80584180 -103704482 + MER5A DNA MER1_type 1 171 -18 759 143 0 172 chr4 80584249 80584458 -103704204 + Tigger1 DNA MER2_type 1 173 -2245 * 1353 112 13 39 chr4 80584429 80584662 -103704000 + Tigger1 DNA MER2_type 2192 2418 0 818 189 81 150 chr4 80584662 80585033 -103703629 + MLT1A1 LTR MaLR 21 365 0 227 204 0 20 chr4 80585042 80585091 -103703571 + L2 LINE L2 3256 3303 -10 595 245 44 13 chr4 80585193 80585352 -103703310 + MIR SINE MIR 88 251 -11 310 229 242 13 chr4 80585370 80585527 -103703135 - MIR SINE MIR -30 232 40 970 205 29 5 chr4 80585803 80586013 -103702649 - MER20 DNA MER1_type 0 219 5 22 0 0 0 chr4 80586320 80586342 -103702320 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 80586498 80586523 -103702139 + AT_rich Low_complexity Low_complexity 1 25 0 2627 42 3 0 chr4 80586910 80587216 -103701446 - AluY SINE Alu -4 307 1 410 292 83 0 chr4 80587962 80588106 -103700556 + MIR SINE MIR 107 262 0 189 107 0 0 chr4 80588241 80588269 -103700393 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 432 286 71 7 chr4 80588753 80588907 -103699755 + MIR3 SINE MIR 14 177 -31 1698 163 52 11 chr4 80589494 80589843 -103698819 - MER47A DNA MER2_type -1 365 3 23 78 0 0 chr4 80590411 80590462 -103698200 + AT_rich Low_complexity Low_complexity 1 51 0 274 166 16 0 chr4 80591637 80591701 -103696961 + MLT1I LTR MaLR 324 438 -12 2072 85 64 0 chr4 80592190 80592471 -103696191 - AluSc SINE Alu -10 299 1 1024 156 0 0 chr4 80593084 80593251 -103695411 - MLT1B LTR MaLR -223 167 1 578 235 13 20 chr4 80593900 80594049 -103694613 - MLT1H LTR MaLR -15 534 387 334 335 96 42 chr4 80594071 80594456 -103694206 + L2 LINE L2 1817 2222 -1092 388 341 63 42 chr4 80594828 80595209 -103693453 - L2 LINE L2 0 3313 2925 189 0 0 0 chr4 80596057 80596078 -103692584 + (TTA)n Simple_repeat Simple_repeat 1 21 0 2492 169 83 11 chr4 80596078 80596635 -103692027 - L1MC2 LINE L1 -32 6312 5716 282 206 0 16 chr4 80596734 80596797 -103691865 - MLT1K LTR MaLR -2 586 525 3926 172 54 15 chr4 80598495 80599062 -103689600 - L1PA16 LINE L1 -6 6160 5616 2169 132 0 3 chr4 80599062 80599358 -103689304 - AluSx SINE Alu -17 295 1 3926 172 54 15 chr4 80599358 80599572 -103689090 - L1PA16 LINE L1 -550 5616 5412 1970 155 3 10 chr4 80599572 80599876 -103688786 - AluJo SINE Alu -4 308 7 3926 172 54 15 chr4 80599876 80599893 -103688769 - L1PA16 LINE L1 -754 5412 5397 1957 117 14 0 chr4 80599893 80600184 -103688478 - L1PA15 LINE L1 0 6165 5871 3926 172 54 15 chr4 80600184 80600680 -103687982 - L1PA16 LINE L1 -769 5397 4820 216 329 76 0 chr4 80600695 80600774 -103687888 - MIR SINE MIR -155 107 23 31 68 0 0 chr4 80601227 80601286 -103687376 + AT_rich Low_complexity Low_complexity 1 59 0 1468 171 34 23 chr4 80601286 80601550 -103687112 - AluJb SINE Alu -45 267 1 181 376 60 8 chr4 80603229 80603346 -103685316 - L2 LINE L2 0 3272 3150 282 326 129 14 chr4 80603587 80603734 -103684928 - L2 LINE L2 0 3272 3109 367 286 0 19 chr4 80603816 80603921 -103684741 + L2 LINE L2 3207 3309 -4 1262 240 67 52 chr4 80603964 80604459 -103684203 - MLT1D LTR MaLR -3 502 1 1703 144 12 68 chr4 80604715 80605041 -103683621 - AluJb SINE Alu -1 311 4 210 349 119 16 chr4 80607229 80607355 -103681307 - L2 LINE L2 -1 3271 3133 24 32 0 0 chr4 80607787 80607818 -103680844 + AT_rich Low_complexity Low_complexity 1 31 0 336 374 112 49 chr4 80607905 80608271 -103680391 - L2 LINE L2 -39 3233 2845 1543 176 225 12 chr4 80608448 80608862 -103679800 - MLT1D LTR MaLR -3 502 1 1701 230 42 52 chr4 80608942 80609393 -103679269 + L1ME2 LINE L1 5618 6065 -99 2219 94 3 7 chr4 80609393 80609690 -103678972 + AluSc SINE Alu 1 296 -13 1701 230 42 52 chr4 80609690 80609782 -103678880 + L1ME2 LINE L1 6065 6156 -8 282 29 0 0 chr4 80610514 80610549 -103678113 + (GA)n Simple_repeat Simple_repeat 2 36 0 1246 77 0 0 chr4 80610553 80610708 -103677954 - AluY SINE Alu -38 273 119 881 112 0 0 chr4 80610735 80610860 -103677802 - AluSq/x SINE Alu -187 125 1 1235 146 24 9 chr4 80611170 80611383 -103677279 + L1PA8 LINE L1 5956 6171 -1 2287 88 3 0 chr4 80611394 80611679 -103676983 + AluSp SINE Alu 9 294 -19 598 225 70 53 chr4 80612746 80612933 -103675729 + MIR SINE MIR 69 258 -4 1175 111 16 0 chr4 80613031 80613221 -103675441 - L1MA5 LINE L1 0 6300 6108 4099 160 21 9 chr4 80613338 80614260 -103674402 - L1MA5 LINE L1 -239 6061 5132 292 188 0 0 chr4 80614250 80614319 -103674343 + L1MA5 LINE L1 5070 5138 -1008 * 971 157 0 33 chr4 80614316 80614357 -103674305 + L1 LINE L1 4849 4890 -1256 2199 144 28 17 chr4 80614357 80614717 -103673945 - THE1B LTR MaLR 0 364 1 971 157 0 33 chr4 80614717 80614885 -103673777 + L1 LINE L1 4890 5051 -1095 594 278 37 21 chr4 80614895 80615086 -103673576 - L2 LINE L2 -30 3283 3090 583 262 48 43 chr4 80616459 80616669 -103671993 + MIR SINE MIR 12 222 -40 229 329 174 13 chr4 80617240 80617389 -103671273 - MIR SINE MIR -13 249 77 407 286 95 37 chr4 80617469 80617658 -103671004 + MIR SINE MIR 20 219 -43 360 298 92 8 chr4 80617646 80617777 -103670885 + MIR SINE MIR 31 172 -90 * 340 295 67 26 chr4 80618272 80618465 -103670197 + MLT1J1 LTR MaLR 99 299 -147 22 0 0 0 chr4 80619200 80619222 -103669440 + AT_rich Low_complexity Low_complexity 1 22 0 441 233 83 0 chr4 80619958 80620091 -103668571 + Charlie4 DNA MER1_type 1818 1961 0 2234 105 0 3 chr4 80620357 80620651 -103668011 + AluSq SINE Alu 2 294 -19 370 293 78 48 chr4 80621301 80621468 -103667194 - MER5B DNA MER1_type -2 176 5 2394 95 0 0 chr4 80621981 80622285 -103666377 - AluSx SINE Alu -8 304 1 1013 210 89 28 chr4 80622358 80622734 -103665928 - LTR16A1 LTR ERVL 0 457 6 2182 116 3 3 chr4 80624468 80624769 -103663893 - AluSx SINE Alu -11 301 1 204 226 113 0 chr4 80625289 80625351 -103663311 - MIR3 SINE MIR -37 171 103 313 271 72 0 chr4 80625415 80625545 -103663117 - MIR SINE MIR -55 207 65 302 288 45 0 chr4 80625776 80625887 -103662775 + L1ME4a LINE L1 5978 6093 -28 407 252 39 0 chr4 80625890 80625993 -103662669 + MIR SINE MIR 85 191 -71 27 73 0 0 chr4 80626098 80626153 -103662509 + AT_rich Low_complexity Low_complexity 1 55 0 22 35 0 0 chr4 80628906 80628935 -103659727 + AT_rich Low_complexity Low_complexity 1 29 0 383 149 255 50 chr4 80629102 80629243 -103659419 - MER96 DNA MER1_type? -3 172 3 2189 103 0 0 chr4 80629816 80630123 -103658539 + AluSc SINE Alu 1 307 0 1986 112 29 4 chr4 80630128 80630432 -103658230 + AluSx SINE Alu 1 311 0 877 172 7 7 chr4 80630436 80630587 -103658075 + AluJo SINE Alu 1 151 -161 2118 122 3 25 chr4 80631337 80631656 -103657006 + AluSx SINE Alu 1 312 0 1070 30 22 37 chr4 80633152 80633286 -103655376 - AluY SINE Alu -179 132 1 1983 139 7 10 chr4 80633606 80633916 -103654746 - AluSg SINE Alu -1 309 1 1602 220 45 24 chr4 80634613 80635077 -103653585 - MARNA DNA Mariner -39 547 74 1315 197 59 3 chr4 80635076 80635366 -103653296 + MER58B DNA MER1_type 19 324 -17 * 653 231 44 30 chr4 80635513 80635716 -103652946 + L1ME LINE L1 5585 5790 -380 327 282 45 0 chr4 80635824 80635934 -103652728 + MIR SINE MIR 148 262 0 1683 137 34 8 chr4 80636131 80636394 -103652268 + AluJb SINE Alu 35 304 -8 1866 109 0 0 chr4 80636684 80636932 -103651730 + AluSq SINE Alu 2 249 -64 963 163 4 90 chr4 80637573 80637753 -103650909 - MLT1A1 LTR MaLR -3 362 207 1745 131 77 4 chr4 80637753 80638027 -103650635 - AluSx SINE Alu -18 294 1 963 163 4 90 chr4 80638027 80638091 -103650571 - MLT1A1 LTR MaLR -158 207 139 21 57 0 0 chr4 80639093 80639128 -103649534 + AT_rich Low_complexity Low_complexity 1 35 0 1237 155 5 50 chr4 80639380 80639599 -103649063 + AluJb SINE Alu 1 209 -103 198 217 22 0 chr4 80639767 80639813 -103648849 + L2 LINE L2 3266 3312 -1 2403 96 3 0 chr4 80639852 80640164 -103648498 - AluSq SINE Alu 0 313 1 403 260 143 61 chr4 80640180 80640261 -103648401 - L1ME4a LINE L1 -214 5907 5834 1977 144 0 3 chr4 80640261 80640566 -103648096 - AluJo SINE Alu -8 304 1 403 260 143 61 chr4 80640566 80640715 -103647947 - L1ME4a LINE L1 -287 5834 5658 1834 124 11 4 chr4 80640835 80641133 -103647529 - AluSx SINE Alu 0 306 7 401 301 22 0 chr4 80641343 80641479 -103647183 - L2 LINE L2 -913 2401 2263 211 328 15 15 chr4 80641569 80641636 -103647026 - MIR3 SINE MIR -139 69 3 1659 175 38 0 chr4 80642973 80643264 -103645398 + AluJb SINE Alu 1 302 -10 2243 180 121 8 chr4 80643450 80644068 -103644594 - Charlie1 DNA MER1_type 0 2761 2074 482 256 16 0 chr4 80644081 80644206 -103644456 - Charlie1a DNA MER1_type -1328 127 1 433 230 0 0 chr4 80645041 80645154 -103643508 + G-rich Low_complexity Low_complexity 1 113 0 211 227 0 0 chr4 80645182 80645226 -103643436 + (TG)n Simple_repeat Simple_repeat 1 44 0 302 198 54 0 chr4 80645413 80645524 -103643138 + (TA)n Simple_repeat Simple_repeat 1 117 0 460 102 0 0 chr4 80646582 80646641 -103642021 + AluSq SINE Alu 5 63 -255 1821 110 12 4 chr4 80646663 80646918 -103641744 + AluSq SINE Alu 53 309 -4 2639 186 75 75 chr4 80647433 80648259 -103640403 + LTR1B LTR ERV1 1 826 0 22 35 0 0 chr4 80648305 80648334 -103640328 + AT_rich Low_complexity Low_complexity 1 29 0 971 185 11 11 chr4 80648807 80648991 -103639671 + AluJb SINE Alu 104 287 -25 264 242 81 24 chr4 80649135 80649259 -103639403 + L1ME4a LINE L1 5990 6120 -1 1506 172 0 48 chr4 80651893 80652183 -103636479 - AluJo SINE Alu -27 285 10 191 360 79 53 chr4 80655209 80655551 -103633111 + L2 LINE L2 2919 3269 -3 184 308 0 0 chr4 80657726 80657778 -103630884 - MIR SINE MIR -75 133 82 700 288 83 21 chr4 80659194 80659434 -103629228 - MIR SINE MIR 0 262 8 501 262 46 68 chr4 80659432 80659669 -103628993 + MIR SINE MIR 31 262 0 * 431 231 47 106 chr4 80659697 80659853 -103628809 - MER112 DNA MER1_type -3 257 119 1909 92 88 0 chr4 80659853 80660165 -103628497 + AluSq SINE Alu 1 335 0 431 231 47 106 chr4 80660165 80660263 -103628399 - MER112 DNA MER1_type -141 119 17 548 145 319 0 chr4 80660295 80660433 -103628229 + MER5A DNA MER1_type 7 188 -1 2010 134 3 0 chr4 80661115 80661405 -103627257 - AluSx SINE Alu -9 303 13 1559 12 0 0 chr4 80661560 80661729 -103626933 - AluYa5 SINE Alu -142 169 1 264 170 0 0 chr4 80661745 80661792 -103626870 + LTR40a LTR ERVL 473 519 0 579 226 42 6 chr4 80661792 80661960 -103626702 - L1ME2 LINE L1 -254 5910 5737 25 31 0 0 chr4 80662445 80662477 -103626185 + AT_rich Low_complexity Low_complexity 1 32 0 859 236 65 19 chr4 80663044 80663260 -103625402 + MIR SINE MIR 11 236 -26 262 88 0 35 chr4 80664109 80664166 -103624496 + (TAG)n Simple_repeat Simple_repeat 1 55 0 363 167 0 0 chr4 80664937 80665003 -103623659 + (TA)n Simple_repeat Simple_repeat 1 66 0 2308 87 7 16 chr4 80665367 80665676 -103622986 - AluSq SINE Alu -7 306 1 737 261 50 50 chr4 80666219 80666418 -103622244 + MIR SINE MIR 2 200 -62 183 313 94 0 chr4 80666455 80666519 -103622143 + L2 LINE L2 3243 3312 -1 275 356 8 34 chr4 80666790 80666908 -103621754 - MIR3 SINE MIR -7 201 87 4805 207 103 39 chr4 80667068 80667720 -103620942 - L1MC4 LINE L1 -3 8039 7430 1762 181 3 3 chr4 80667720 80668013 -103620649 - AluJb SINE Alu -19 293 1 4805 207 103 39 chr4 80668013 80668946 -103619716 - L1MC4 LINE L1 -612 7430 6352 2951 222 64 18 chr4 80668943 80669870 -103618792 - L1ME2 LINE L1 -10 6154 5200 * 3941 134 13 6 chr4 80669878 80670511 -103618151 - L1PA15 LINE L1 -2 7601 6965 13363 219 26 9 chr4 80670511 80673172 -103615490 - L1PA15 LINE L1 -1181 6403 3671 4827 102 74 55 chr4 80673172 80673983 -103614679 - LTR12 LTR ERV1 0 826 1 13363 219 26 9 chr4 80673983 80674708 -103613954 - L1PA15 LINE L1 -3913 3671 2960 1416 88 0 52 chr4 80674808 80675002 -103613660 - AluY SINE Alu -127 184 1 5816 275 42 53 chr4 80675003 80677751 -103610911 - L1PA15 LINE L1 -4860 2721 4 328 242 97 16 chr4 80677844 80677968 -103610694 - L1ME2 LINE L1 -950 5196 5063 256 313 55 12 chr4 80678107 80678270 -103610392 - MLT1K LTR MaLR -333 255 86 1348 161 56 11 chr4 80679304 80679590 -103609072 - L1MA8 LINE L1 -6 6285 5987 267 187 220 0 chr4 80680012 80680103 -103608559 + MER117 DNA MER1_type 39 149 -48 34 42 0 0 chr4 80680262 80680310 -103608352 + AT_rich Low_complexity Low_complexity 1 48 0 216 352 55 45 chr4 80681825 80682115 -103606547 - L2 LINE L2 -90 3223 2931 * 426 339 18 32 chr4 80682110 80682331 -103606331 - L2 LINE L2 -509 2805 2588 213 132 0 0 chr4 80682444 80682482 -103606180 + (TG)n Simple_repeat Simple_repeat 1 38 0 639 231 161 12 chr4 80682970 80683212 -103605450 - LTR16A1 LTR ERVL -1 456 179 1676 191 2 65 chr4 80683271 80683670 -103604992 - MLT1A2 LTR MaLR 0 374 1 758 22 0 0 chr4 80684221 80684312 -103604350 - L1PA4 LINE L1 -260 5895 5805 * 2048 52 11 4 chr4 80684267 80684577 -103604085 + L1PA5 LINE L1 5829 6153 -1 1950 134 65 16 chr4 80684606 80684927 -103603735 - MER1B DNA MER1_type 0 337 1 414 0 0 0 chr4 80684938 80684948 -103603714 + (TA)n Simple_repeat Simple_repeat 1 56 0 414 0 0 0 chr4 80684948 80684994 -103603668 + (TA)n Simple_repeat Simple_repeat 1 46 0 1100 284 78 68 chr4 80686632 80687608 -103601054 - L2 LINE L2 0 3313 2322 228 306 194 0 chr4 80687613 80687711 -103600951 - L2 LINE L2 0 3313 3197 * 314 184 11 81 chr4 80687703 80687790 -103600872 - MIR3 SINE MIR 0 208 128 183 80 0 0 chr4 80690556 80690581 -103598081 + (A)n Simple_repeat Simple_repeat 1 25 0 296 327 65 59 chr4 80692037 80692271 -103596391 + MIR3 SINE MIR 2 255 -7 2324 106 6 0 chr4 80693012 80693360 -103595302 - AluSq SINE Alu 0 350 1 268 297 0 0 chr4 80694956 80695030 -103593632 - MIR SINE MIR -29 233 160 282 243 0 0 chr4 80695195 80695265 -103593397 + L1MC4 LINE L1 6634 6703 -1339 344 273 23 0 chr4 80695277 80695365 -103593297 + L1MC4 LINE L1 6614 6703 -1339 387 0 0 0 chr4 80695372 80695415 -103593247 + (GA)n Simple_repeat Simple_repeat 1 43 0 947 167 0 12 chr4 80699427 80699589 -103589073 - FRAM SINE Alu -2 164 5 192 77 0 0 chr4 80700005 80700031 -103588631 + (GAAAA)n Simple_repeat Simple_repeat 1 26 0 303 377 48 20 chr4 80700762 80700908 -103587754 + MIR SINE MIR 20 169 -93 2244 62 48 0 chr4 80702150 80702439 -103586223 - AluY SINE Alu -8 303 1 429 339 53 16 chr4 80703237 80703482 -103585180 - MIR SINE MIR -7 255 2 434 289 58 8 chr4 80705248 80705369 -103583293 - MIR SINE MIR -113 149 23 293 322 33 0 chr4 80705418 80705508 -103583154 - MER91A DNA MER1_type -100 96 4 245 294 0 43 chr4 80706286 80706378 -103582284 - MIR SINE MIR -5 257 170 1581 181 45 0 chr4 80706828 80707116 -103581546 + AluJb SINE Alu 1 301 -11 194 301 136 34 chr4 80709067 80709243 -103579419 - L2 LINE L2 -553 2761 2568 544 177 0 26 chr4 80709251 80709364 -103579298 + MIR SINE MIR 104 213 -49 995 173 31 71 chr4 80710222 80710448 -103578214 - MER20 DNA MER1_type -1 218 2 454 244 0 0 chr4 80711967 80712057 -103576605 + L2 LINE L2 3224 3313 0 213 327 77 45 chr4 80712401 80712557 -103576105 - MIR SINE MIR -81 181 21 252 130 0 0 chr4 80715629 80715675 -103572987 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 262 239 34 162 chr4 80716736 80716970 -103571692 - L2 LINE L2 -1 3312 3109 190 405 116 16 chr4 80717844 80717965 -103570697 - L2 LINE L2 -1 3271 3139 245 192 51 51 chr4 80719070 80719148 -103569514 - MER116 DNA Mariner 0 80 3 1576 136 40 0 chr4 80720505 80720755 -103567907 + AluSx SINE Alu 35 294 -18 34 0 0 0 chr4 80720758 80720792 -103567870 + AT_rich Low_complexity Low_complexity 1 34 0 29 0 0 0 chr4 80720884 80720913 -103567749 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr4 80720934 80720972 -103567690 + AT_rich Low_complexity Low_complexity 1 38 0 840 222 56 21 chr4 80721245 80721479 -103567183 - L1ME2 LINE L1 -17 6147 5906 924 257 109 14 chr4 80721479 80721839 -103566823 + LTR40a LTR ERVL 1 394 -68 1269 77 0 0 chr4 80721841 80722011 -103566651 - AluY SINE Alu -1 310 141 367 278 62 64 chr4 80722290 80722500 -103566162 + MER20B DNA MER1_type 3 215 -4 597 115 56 7 chr4 80723222 80723948 -103564714 + (TA)n Simple_repeat Simple_repeat 1 761 0 33 0 0 0 chr4 80723948 80723981 -103564681 + AT_rich Low_complexity Low_complexity 1 33 0 1230 88 0 6 chr4 80723981 80724151 -103564511 - AluY SINE Alu -18 293 125 229 277 34 42 chr4 80724547 80724666 -103563996 - MIR3 SINE MIR -5 203 86 904 216 0 29 chr4 80724721 80724925 -103563737 + MER105 DNA DNA 2 199 -5 212 190 35 0 chr4 80728127 80728185 -103560477 + CT-rich Low_complexity Low_complexity 2 61 0 4413 217 75 5 chr4 80728781 80729845 -103558817 - L1MC4a LINE L1 0 7808 6670 614 191 181 11 chr4 80729853 80730041 -103558621 - L1MC4a LINE L1 -1320 6488 6269 1650 93 20 8 chr4 80730219 80730466 -103558196 - L1PA8A LINE L1 0 6131 5882 1946 85 16 0 chr4 80730518 80730776 -103557886 + AluSc SINE Alu 45 306 -3 2288 77 10 0 chr4 80730886 80731184 -103557478 + AluY SINE Alu 1 301 -10 2339 74 0 7 chr4 80731411 80731721 -103556941 - AluY SINE Alu -3 308 1 224 252 68 87 chr4 80733334 80733437 -103555225 + MIR SINE MIR 44 144 -64 1901 160 7 0 chr4 80733609 80733916 -103554746 + AluSp SINE Alu 1 309 -4 214 407 0 0 chr4 80734744 80734830 -103553832 + MER5A DNA MER1_type 98 183 -6 274 300 14 0 chr4 80735268 80735338 -103553324 + MARNA DNA Mariner 431 501 -85 326 238 90 33 chr4 80735823 80735945 -103552717 + MER3 DNA MER1_type 41 122 -87 1660 163 43 11 chr4 80735963 80736331 -103552331 + MER3 DNA MER1_type 2244 2623 0 32262 83 5 7 chr4 80736787 80742947 -103545715 - L1PA6 LINE L1 -1 6153 11 28 0 0 0 chr4 80743271 80743299 -103545363 + AT_rich Low_complexity Low_complexity 1 28 0 1027 152 0 0 chr4 80743299 80743444 -103545218 - AluJb SINE Alu -20 292 148 244 354 63 0 chr4 80743444 80743571 -103545091 + L2 LINE L2 3172 3306 -7 2381 29 18 0 chr4 80745142 80745423 -103543239 + L1PA3 LINE L1 5870 6155 0 24 0 0 0 chr4 80745581 80745605 -103543057 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr4 80745876 80745912 -103542750 + AT_rich Low_complexity Low_complexity 1 36 0 240 214 0 0 chr4 80746480 80746536 -103542126 + CT-rich Low_complexity Low_complexity 2 57 0 227 274 32 6 chr4 80746549 80746706 -103541956 + CT-rich Low_complexity Low_complexity 1 161 0 393 123 0 0 chr4 80746833 80746898 -103541764 + (TCC)n Simple_repeat Simple_repeat 2 66 0 652 221 128 41 chr4 80747412 80747430 -103541232 + MIR SINE MIR 29 44 -218 1848 187 52 48 chr4 80747430 80747504 -103541158 - MLT1C LTR MaLR 0 467 395 2109 106 3 7 chr4 80747504 80747835 -103540827 - AluSp SINE Alu 0 330 1 1848 187 52 48 chr4 80747835 80748220 -103540442 - MLT1C LTR MaLR -72 395 5 652 221 128 41 chr4 80748220 80748396 -103540266 + MIR SINE MIR 44 240 -22 227 333 12 0 chr4 80749671 80749755 -103538907 - MLT1K LTR MaLR -4 584 500 460 273 52 26 chr4 80750252 80750446 -103538216 + LTR16C LTR ERVL 251 449 -42 234 0 0 0 chr4 80750888 80750914 -103537748 + (A)n Simple_repeat Simple_repeat 1 26 0 277 139 0 0 chr4 80750941 80750984 -103537678 - LTR16C LTR ERVL -16 475 433 281 236 34 56 chr4 80751127 80751216 -103537446 - L1MC4a LINE L1 -1660 6148 6062 1226 274 64 12 chr4 80751352 80751837 -103536825 - L1MC4a LINE L1 -1849 5959 5450 2211 159 46 1 chr4 80751839 80752373 -103536289 + MER6A DNA MER2_type 1 605 0 242 179 83 65 chr4 80752373 80752541 -103536121 - L1MC4a LINE L1 -2377 5431 5261 509 317 31 16 chr4 80752733 80753052 -103535610 - L1MC4a LINE L1 -1094 5052 4729 33 56 0 0 chr4 80753305 80753359 -103535303 + AT_rich Low_complexity Low_complexity 1 54 0 334 270 17 43 chr4 80753374 80753489 -103535173 - L1M LINE L1 -697 5424 5313 902 101 6 32 chr4 80754211 80754231 -103534431 + L1P5 LINE L1 5347 5366 -785 4377 116 0 1 chr4 80754231 80754886 -103533776 - L1PB1 LINE L1 -2 6149 5496 902 101 6 32 chr4 80754886 80755023 -103533639 + L1PB1 LINE L1 5366 5500 -651 209 250 33 0 chr4 80755169 80755229 -103533433 - MIR SINE MIR -110 152 91 180 263 45 128 chr4 80755643 80755776 -103532886 + L2 LINE L2 2727 2848 -466 852 92 21 7 chr4 80758596 80758737 -103529925 + (TTTC)n Simple_repeat Simple_repeat 4 146 0 21 0 0 0 chr4 80759220 80759241 -103529421 + AT_rich Low_complexity Low_complexity 1 21 0 308 341 75 12 chr4 80760005 80760178 -103528484 - MIR SINE MIR -3 259 76 307 282 57 7 chr4 80760263 80760411 -103528251 - MIR SINE MIR -33 229 70 2333 96 3 3 chr4 80761157 80761469 -103527193 - AluSx SINE Alu 0 312 1 194 167 42 21 chr4 80761705 80761753 -103526909 + L2 LINE L2 3265 3313 0 216 245 0 0 chr4 80762006 80762059 -103526603 + (TG)n Simple_repeat Simple_repeat 2 54 0 185 300 14 43 chr4 80763285 80763355 -103525307 + L2 LINE L2 3175 3242 -30 21 0 0 0 chr4 80763418 80763439 -103525223 + AT_rich Low_complexity Low_complexity 1 21 0 2398 44 10 14 chr4 80764440 80764736 -103523926 + AluY SINE Alu 1 295 -16 21 36 0 0 chr4 80765025 80765053 -103523609 + AT_rich Low_complexity Low_complexity 1 28 0 507 376 13 0 chr4 80765118 80765352 -103523310 + MIR SINE MIR 19 255 -7 38 51 0 0 chr4 80765486 80765545 -103523117 + AT_rich Low_complexity Low_complexity 1 59 0 612 266 89 29 chr4 80765577 80765861 -103522801 - MLT1J1 LTR MaLR -84 362 47 198 368 28 28 chr4 80765998 80766104 -103522558 - L2 LINE L2 -165 3107 3002 547 287 97 5 chr4 80766817 80767033 -103521629 + MIR SINE MIR 24 259 -3 1680 167 17 15 chr4 80767981 80768331 -103520331 - L1MB8 LINE L1 -290 5888 5572 24 0 0 0 chr4 80769463 80769487 -103519175 + AT_rich Low_complexity Low_complexity 1 24 0 212 299 107 75 chr4 80771596 80771742 -103516920 - MIR SINE MIR -10 252 97 7554 30 2 0 chr4 80771742 80772896 -103515766 + L1PA3 LINE L1 5000 6155 0 212 299 107 75 chr4 80772896 80772936 -103515726 - MIR SINE MIR -165 97 60 22 0 0 0 chr4 80773904 80773926 -103514736 + AT_rich Low_complexity Low_complexity 1 22 0 2169 106 0 0 chr4 80774908 80775213 -103513449 + AluSg SINE Alu 1 305 0 203 103 26 0 chr4 80776020 80776059 -103512603 + CT-rich Low_complexity Low_complexity 2 41 0 234 357 50 66 chr4 80776116 80776374 -103512288 - L2 LINE L2 -86 3186 2933 208 255 20 0 chr4 80776839 80776890 -103511772 + L2 LINE L2 3216 3267 -5 266 241 153 44 chr4 80777496 80777633 -103511029 + MIR3 SINE MIR 50 201 -7 686 143 0 34 chr4 80778444 80778619 -103510043 + (TTCC)n Simple_repeat Simple_repeat 1 169 0 2275 117 0 0 chr4 80778619 80778950 -103509712 - AluSx SINE Alu 0 312 1 1892 172 0 3 chr4 80779322 80779636 -103509026 - AluSq SINE Alu 0 313 1 401 304 98 52 chr4 80780580 80781018 -103507644 + L1ME4a LINE L1 5607 6064 -57 2012 153 3 7 chr4 80781505 80781813 -103506849 - AluSx SINE Alu -5 307 1 25 31 0 0 chr4 80781824 80781856 -103506806 + AT_rich Low_complexity Low_complexity 1 32 0 704 239 91 10 chr4 80781884 80782093 -103506569 + MIR SINE MIR 37 262 0 24 32 0 0 chr4 80782475 80782506 -103506156 + AT_rich Low_complexity Low_complexity 1 31 0 998 160 0 16 chr4 80782646 80782833 -103505829 - L1MA6 LINE L1 -4 6296 6113 1840 127 41 0 chr4 80783076 80783344 -103505318 - AluSx SINE Alu -33 279 1 21 0 0 0 chr4 80784198 80784219 -103504443 + AT_rich Low_complexity Low_complexity 1 21 0 231 262 262 0 chr4 80784282 80784389 -103504273 + MIR SINE MIR 46 180 -82 1769 166 62 16 chr4 80784407 80784780 -103503882 + MLT1B LTR MaLR 1 390 0 35 0 0 0 chr4 80784847 80784882 -103503780 + AT_rich Low_complexity Low_complexity 1 35 0 794 178 18 93 chr4 80784919 80785083 -103503579 + MER3 DNA MER1_type 1 145 -64 1667 145 0 39 chr4 80785083 80785365 -103503297 + AluSx SINE Alu 24 294 -18 794 178 18 93 chr4 80785365 80785425 -103503237 + MER3 DNA MER1_type 145 208 -1 2845 28 0 0 chr4 80786400 80786718 -103501944 - AluYb8 SINE Alu 0 318 1 211 217 29 14 chr4 80786728 80786797 -103501865 + L2 LINE L2 3118 3187 -126 653 260 101 13 chr4 80787192 80787419 -103501243 + MIR SINE MIR 1 247 -15 295 387 78 0 chr4 80787497 80787639 -103501023 + MIR3 SINE MIR 49 201 -7 331 364 19 25 chr4 80790604 80790766 -103497896 + MIR SINE MIR 12 172 -90 652 304 65 34 chr4 80790902 80791195 -103497467 + L2 LINE L2 3012 3313 0 309 26 0 0 chr4 80792172 80792210 -103496452 + (TG)n Simple_repeat Simple_repeat 1 38 0 393 331 99 0 chr4 80792454 80792626 -103496036 - MIR SINE MIR -37 225 37 325 333 31 23 chr4 80793066 80793195 -103495467 - MIR SINE MIR -62 146 17 572 262 53 67 chr4 80793550 80793775 -103494887 + MIR SINE MIR 41 262 0 464 281 263 32 chr4 80794157 80794632 -103494030 - L2 LINE L2 -241 3031 2445 39 0 0 0 chr4 80794696 80794735 -103493927 + AT_rich Low_complexity Low_complexity 1 39 0 237 33 0 0 chr4 80795998 80796028 -103492634 + (GA)n Simple_repeat Simple_repeat 2 31 0 2276 110 0 0 chr4 80796640 80796941 -103491721 - AluSc SINE Alu -8 301 1 23 33 0 0 chr4 80797176 80797206 -103491456 + AT_rich Low_complexity Low_complexity 1 30 0 1914 161 0 0 chr4 80797944 80798230 -103490432 - AluSx SINE Alu -26 286 1 186 194 0 0 chr4 80798713 80798744 -103489918 + L2 LINE L2 3271 3301 -12 976 288 57 32 chr4 80798932 80799186 -103489476 - L2 LINE L2 -606 2708 2439 728 249 88 19 chr4 80799186 80799391 -103489271 + MER20 DNA MER1_type 1 219 0 976 288 57 32 chr4 80799391 80799539 -103489123 - L2 LINE L2 -875 2439 2296 2226 103 3 0 chr4 80800691 80800993 -103487669 + AluSg SINE Alu 1 303 -7 43563 42 5 2 chr4 80801694 80807819 -103480843 - L1PA3 LINE L1 0 6155 9 227 277 36 12 chr4 80808502 80808585 -103480077 - L2 LINE L2 0 3313 3229 306 339 83 43 chr4 80808845 80809146 -103479516 - L2 LINE L2 -447 2867 2555 222 329 0 0 chr4 80809695 80809765 -103478897 + (TATG)n Simple_repeat Simple_repeat 4 73 0 470 17 0 17 chr4 80809820 80809880 -103478782 + (TA)n Simple_repeat Simple_repeat 2 60 0 374 216 36 45 chr4 80811093 80811204 -103477458 + MER5A DNA MER1_type 80 189 0 196 184 0 41 chr4 80811608 80811657 -103477005 + L2 LINE L2 3262 3308 -5 191 179 51 0 chr4 80813802 80813841 -103474821 - MIR SINE MIR -119 89 49 617 174 275 7 chr4 80813855 80814004 -103474658 - MER5A DNA MER1_type 0 189 1 284 235 25 62 chr4 80814324 80814405 -103474257 - MIR SINE MIR -165 97 20 1043 222 46 0 chr4 80817608 80817824 -103470838 + AluJo SINE Alu 86 311 -1 1771 181 3 3 chr4 80817845 80818149 -103470513 + AluJo SINE Alu 1 304 -8 2635 143 100 43 chr4 80818655 80819216 -103469446 - LTR49 LTR ERV1 0 595 3 201 345 12 12 chr4 80819943 80820027 -103468635 - L3 LINE CR1 -106 1471 1388 240 295 0 0 chr4 80820383 80820444 -103468218 - MIR SINE MIR -136 126 66 46 0 0 0 chr4 80820524 80820570 -103468092 + AT_rich Low_complexity Low_complexity 1 46 0 720 263 91 4 chr4 80821627 80821859 -103466803 - MIR SINE MIR -8 254 3 3511 157 57 41 chr4 80823368 80824125 -103464537 - L1MB1 LINE L1 -1 6167 5399 25 31 0 0 chr4 80824125 80824157 -103464505 + AT_rich Low_complexity Low_complexity 1 32 0 2492 77 0 3 chr4 80825108 80825419 -103463243 + AluY SINE Alu 1 310 -1 266 300 0 12 chr4 80825423 80825503 -103463159 - MLT1H1-int LTR MaLR -1633 102 24 1270 253 35 35 chr4 80825515 80825887 -103462775 - MLT1H1 LTR MaLR 0 555 184 287 286 33 11 chr4 80825917 80826008 -103462654 - MLT1H1 LTR MaLR -483 107 15 210 71 0 0 chr4 80826848 80826876 -103461786 + (ATG)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr4 80826889 80826910 -103461752 + AT_rich Low_complexity Low_complexity 1 21 0 12550 225 40 20 chr4 80827034 80827571 -103461091 - L1PA16 LINE L1 -9 7595 7070 2392 94 0 3 chr4 80827571 80827870 -103460792 - AluSq SINE Alu -15 298 1 12550 225 40 20 chr4 80827870 80829136 -103459526 - L1PA16 LINE L1 -534 7070 5830 1887 155 0 23 chr4 80829136 80829446 -103459216 - AluSx SINE Alu -9 303 1 12550 225 40 20 chr4 80829446 80832963 -103455699 - L1PA16 LINE L1 -1774 5830 2170 299 325 15 14 chr4 80833177 80833388 -103455274 - L1PA16 LINE L1 -5276 2298 2084 1046 319 62 16 chr4 80833534 80833983 -103454679 - L1PA16 LINE L1 -6317 1257 788 264 316 13 0 chr4 80834147 80834223 -103454439 + L2 LINE L2 3183 3259 -54 25 0 0 0 chr4 80836915 80836940 -103451722 + AT_rich Low_complexity Low_complexity 1 25 0 1202 33 20 0 chr4 80837054 80837204 -103451458 - L1PA4 LINE L1 -261 5894 5742 527 15 0 0 chr4 80837204 80837262 -103451400 + L1PA4 LINE L1 6087 6151 -4 747 265 9 33 chr4 80838320 80838528 -103450134 - MLT1A2 LTR MaLR -4 370 168 951 189 137 0 chr4 80838528 80838740 -103449922 + MSTA LTR MaLR 1 241 -187 714 124 53 0 chr4 80838748 80838861 -103449801 - MLT1A2 LTR MaLR -252 122 4 1907 131 0 28 chr4 80839077 80839360 -103449302 + AluJb SINE Alu 10 284 -28 875 230 27 78 chr4 80839378 80839674 -103448988 + L2 LINE L2 3032 3312 -1 21 0 0 0 chr4 80839718 80839739 -103448923 + AT_rich Low_complexity Low_complexity 1 21 0 604 288 66 98 chr4 80839821 80839869 -103448793 - L2 LINE L2 -743 2571 2523 2157 128 0 3 chr4 80839869 80840181 -103448481 + AluSx SINE Alu 1 311 -1 604 288 66 98 chr4 80840181 80840479 -103448183 - L2 LINE L2 -791 2523 2236 1025 116 12 17 chr4 80841035 80841207 -103447455 - L1PB2 LINE L1 -3 6148 5978 1507 204 36 33 chr4 80843164 80843526 -103445136 + MLT1A1 LTR MaLR 3 365 0 345 303 65 31 chr4 80843558 80843594 -103445068 - L1MB3 LINE L1 -50 6133 6098 1470 237 17 24 chr4 80843594 80844008 -103444654 - L1ME1 LINE L1 -80 6086 5676 22 0 0 0 chr4 80844384 80844406 -103444256 + AT_rich Low_complexity Low_complexity 1 22 0 261 235 106 12 chr4 80844506 80844591 -103444071 + L2 LINE L2 3219 3311 -2 448 313 17 0 chr4 80844790 80844966 -103443696 - MER104 DNA Tc2 0 180 2 30 27 0 0 chr4 80844990 80845027 -103443635 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr4 80845043 80845066 -103443596 + AT_rich Low_complexity Low_complexity 1 23 0 192 342 26 34 chr4 80845197 80845314 -103443348 + L3 LINE CR1 923 1038 -539 574 335 12 0 chr4 80845374 80845544 -103443118 - MIR SINE MIR -85 177 6 223 343 159 23 chr4 80845553 80845862 -103442800 + L3 LINE CR1 1071 1421 -156 2431 91 0 0 chr4 80846302 80846611 -103442051 - AluSg SINE Alu -1 309 1 1339 209 17 20 chr4 80846667 80846964 -103441698 - AluJo SINE Alu -16 296 1 22 0 0 0 chr4 80847963 80847985 -103440677 + AT_rich Low_complexity Low_complexity 1 22 0 630 308 28 24 chr4 80848069 80848322 -103440340 - MIR SINE MIR -3 259 6 210 370 36 7 chr4 80848398 80848536 -103440126 - L3 LINE CR1 -21 1556 1415 213 272 35 97 chr4 80848644 80848758 -103439904 - MIR SINE MIR -59 203 97 438 227 9 11 chr4 80848905 80849022 -103439640 - MLT1J2 LTR MaLR -298 148 34 3056 166 56 50 chr4 80849077 80851244 -103437418 + L1PA13 LINE L1 3863 6158 -5 1024 224 87 47 chr4 80852299 80852724 -103435938 - MLT1C LTR MaLR 0 467 13 1523 193 3 30 chr4 80852876 80853171 -103435491 + AluJb SINE Alu 1 287 -25 231 241 95 44 chr4 80853207 80853344 -103435318 - L1ME4a LINE L1 -3 6118 5975 211 218 91 0 chr4 80853540 80853595 -103435067 + MIR SINE MIR 201 260 -2 255 338 156 17 chr4 80853617 80853854 -103434808 + L3 LINE CR1 1306 1575 -2 301 279 87 19 chr4 80854875 80854979 -103433683 + MIR SINE MIR 110 220 -42 25 31 0 0 chr4 80855251 80855283 -103433379 + AT_rich Low_complexity Low_complexity 1 32 0 685 304 83 0 chr4 80855283 80855500 -103433162 - MIR SINE MIR -27 235 1 262 356 0 29 chr4 80855653 80855757 -103432905 + L2 LINE L2 3209 3309 -4 642 311 57 10 chr4 80856737 80856946 -103431716 - LTR33 LTR ERVL -297 224 6 22 0 0 0 chr4 80857661 80857683 -103430979 + AT_rich Low_complexity Low_complexity 1 22 0 351 0 0 0 chr4 80858510 80858549 -103430113 + (CA)n Simple_repeat Simple_repeat 2 40 0 2080 63 3 85 chr4 80858564 80858880 -103429782 + AluY SINE Alu 2 291 -20 22 35 0 0 chr4 80859008 80859037 -103429625 + AT_rich Low_complexity Low_complexity 1 29 0 1764 158 13 16 chr4 80859219 80859522 -103429140 - AluJb SINE Alu -8 304 3 442 237 40 20 chr4 80859631 80859783 -103428879 - L1ME4a LINE L1 -230 5940 5786 273 260 0 14 chr4 80860263 80860336 -103428326 - MLT1-int LTR MaLR -1294 77 6 496 252 123 0 chr4 80860659 80860814 -103427848 + MIR SINE MIR 30 203 -59 2015 140 0 0 chr4 80863060 80863353 -103425309 - AluSx SINE Alu -18 294 2 293 158 40 0 chr4 80863459 80863560 -103425102 + (TA)n Simple_repeat Simple_repeat 2 106 0 23 68 0 0 chr4 80863576 80863620 -103425042 + AT_rich Low_complexity Low_complexity 1 44 0 186 194 0 0 chr4 80863644 80863706 -103424956 + (TA)n Simple_repeat Simple_repeat 2 63 0 500 287 199 0 chr4 80864042 80864258 -103424404 - L1ME4a LINE L1 -2037 5771 5513 8530 169 118 10 chr4 80864261 80867198 -103421464 - L1MA9 LINE L1 -3 7728 4425 4927 159 5 0 chr4 80867198 80868396 -103420266 - L1PA16 LINE L1 -1 6165 4949 8530 169 118 10 chr4 80868396 80868523 -103420139 - L1MA9 LINE L1 -3306 4425 4313 43231 40 6 2 chr4 80868526 80874652 -103414010 - L1PA4 LINE L1 -3 6152 1 2707 271 46 28 chr4 80874648 80877098 -103411564 - L1MA9 LINE L1 -3233 4332 2012 * 46 33 0 0 chr4 80877144 80877204 -103411458 + AT_rich Low_complexity Low_complexity 1 60 0 246 280 0 0 chr4 80877402 80877452 -103411210 + (CA)n Simple_repeat Simple_repeat 1 50 0 189 132 0 0 chr4 80877464 80877502 -103411160 + (GA)n Simple_repeat Simple_repeat 2 39 0 534 326 125 13 chr4 80878021 80878404 -103410258 - HAL1b LINE L1 -631 717 292 731 213 67 61 chr4 80882001 80882258 -103406404 - LTR49-int LTR ERV1 -3082 1798 989 511 182 0 0 chr4 80882893 80882981 -103405681 + MIR SINE MIR 98 185 -77 219 36 0 0 chr4 80882981 80883009 -103405653 + (CA)n Simple_repeat Simple_repeat 2 29 0 204 385 103 26 chr4 80883154 80883388 -103405274 + L2 LINE L2 3021 3272 0 1279 166 30 30 chr4 80883949 80884251 -103404411 + MER33 DNA MER1_type 18 319 -5 2327 198 21 52 chr4 80886364 80886940 -103401722 + MER74A LTR ERVL 1 558 0 198 322 70 35 chr4 80886993 80887108 -103401554 - L2 LINE L2 -5 3308 3190 23 33 0 0 chr4 80887404 80887434 -103401228 + AT_rich Low_complexity Low_complexity 1 30 0 709 242 11 22 chr4 80887524 80887706 -103400956 - AluJo SINE Alu -16 296 117 1175 166 61 90 chr4 80887761 80888039 -103400623 - MLT1B LTR MaLR -2 388 119 2172 192 27 56 chr4 80888051 80888704 -103399958 - MER21A LTR ERV1 -199 508 78 1980 280 79 30 chr4 80888768 80889638 -103399024 + L2 LINE L2 2230 3124 -189 2463 66 0 0 chr4 80889665 80889983 -103398679 - AluYb8 SINE Alu 0 318 1 22 0 0 0 chr4 80889989 80890011 -103398651 + AT_rich Low_complexity Low_complexity 1 22 0 2085 137 0 3 chr4 80890356 80890669 -103397993 - AluSq SINE Alu -1 312 1 383 315 16 0 chr4 80891088 80891215 -103397447 + MIR SINE MIR 132 260 -2 458 122 0 0 chr4 80891483 80891557 -103397105 - L1MA3 LINE L1 -1 6304 6231 1096 94 0 0 chr4 80891566 80891726 -103396936 - L1M LINE L1 -887 5418 5259 6741 140 25 6 chr4 80891737 80893802 -103394860 - L1MA3 LINE L1 -76 6229 4123 262 341 0 0 chr4 80893802 80893890 -103394772 - MER117 DNA MER1_type -105 92 5 25 65 0 0 chr4 80894108 80894154 -103394508 + AT_rich Low_complexity Low_complexity 1 46 0 27 49 0 0 chr4 80896246 80896287 -103392375 + AT_rich Low_complexity Low_complexity 1 41 0 230 299 58 23 chr4 80897721 80897808 -103390854 - MIR SINE MIR -59 149 60 957 206 62 20 chr4 80898140 80898446 -103390216 - MER33 DNA MER1_type -4 320 2 277 372 44 15 chr4 80898580 80898717 -103389945 - MIR SINE MIR -117 145 5 23 86 0 0 chr4 80898985 80899043 -103389619 + AT_rich Low_complexity Low_complexity 1 58 0 22 35 0 0 chr4 80899158 80899187 -103389475 + AT_rich Low_complexity Low_complexity 1 29 0 747 304 123 40 chr4 80899187 80899816 -103388846 - L2 LINE L2 0 3313 2590 393 314 38 13 chr4 80900459 80900618 -103388044 + L2 LINE L2 3151 3313 0 812 182 166 0 chr4 80900752 80900939 -103387723 - MER20 DNA MER1_type -1 218 1 39 22 0 0 chr4 80901042 80901088 -103387574 + AT_rich Low_complexity Low_complexity 1 46 0 197 316 40 0 chr4 80903015 80903091 -103385571 - L2 LINE L2 0 3272 3194 322 283 79 26 chr4 80903742 80903894 -103384768 + L1ME4a LINE L1 5729 5888 -233 1890 136 28 11 chr4 80903915 80904202 -103384460 - AluSg SINE Alu -18 292 1 885 106 65 0 chr4 80904205 80904328 -103384334 - AluSg SINE Alu -179 131 1 322 272 107 53 chr4 80904364 80904533 -103384129 + L1ME4a LINE L1 5941 6118 -3 844 262 102 32 chr4 80904626 80905157 -103383505 + L1ME4a LINE L1 5536 6103 -18 182 194 56 0 chr4 80905437 80905473 -103383189 - L2 LINE L2 -12 3301 3264 2367 79 3 3 chr4 80905556 80905861 -103382801 + AluY SINE Alu 1 305 -6 226 289 36 60 chr4 80905893 80905976 -103382686 + MIR SINE MIR 57 137 -71 635 311 75 36 chr4 80905981 80906287 -103382375 - L2 LINE L2 0 3313 2996 353 320 86 23 chr4 80907485 80907613 -103381049 - L2 LINE L2 -3 3269 3134 2162 38 0 4 chr4 80907836 80908098 -103380564 + L1PA5 LINE L1 5886 6146 -8 785 317 195 17 chr4 80908168 80908940 -103379722 - L2 LINE L2 -791 2523 1610 2220 126 3 0 chr4 80908940 80909250 -103379412 + AluSq SINE Alu 1 311 -2 415 299 45 0 chr4 80909327 80909461 -103379201 + MIR SINE MIR 116 255 -7 196 240 0 60 chr4 80909496 80909546 -103379116 + L2 LINE L2 3266 3312 -1 222 116 0 0 chr4 80910205 80910248 -103378414 + (A)n Simple_repeat Simple_repeat 1 43 0 342 0 0 0 chr4 80912318 80912356 -103376306 + (TA)n Simple_repeat Simple_repeat 1 38 0 240 289 67 67 chr4 80913050 80913140 -103375522 + L2 LINE L2 3174 3263 -9 345 319 80 24 chr4 80914189 80914424 -103374238 - LTR16A LTR ERVL -66 391 133 622 278 33 0 chr4 80914556 80914707 -103373955 - MIR SINE MIR -29 233 78 464 127 0 0 chr4 80914713 80914784 -103373878 + AluSp SINE Alu 1 71 -241 1600 113 19 27 chr4 80914807 80915064 -103373598 + AluSp SINE Alu 47 301 -12 189 0 0 0 chr4 80916059 80916080 -103372582 + (A)n Simple_repeat Simple_repeat 1 21 0 185 105 0 26 chr4 80916196 80916234 -103372428 + (TC)n Simple_repeat Simple_repeat 2 38 0 1072 179 221 4 chr4 80917444 80917724 -103370938 - MER58B DNA MER1_type 0 341 1 188 271 0 34 chr4 80917800 80917859 -103370803 - MIR SINE MIR -193 69 13 1971 149 3 10 chr4 80918233 80918535 -103370127 - AluJb SINE Alu -12 300 1 193 213 75 100 chr4 80918726 80918806 -103369856 - MIR SINE MIR -2 260 183 378 0 0 0 chr4 80918813 80918855 -103369807 + (CA)n Simple_repeat Simple_repeat 1 42 0 228 182 0 0 chr4 80918871 80918915 -103369747 + (TATATG)n Simple_repeat Simple_repeat 4 47 0 199 253 76 38 chr4 80918929 80919008 -103369654 - MIR SINE MIR -169 93 12 367 273 188 0 chr4 80919161 80919289 -103369373 + L2 LINE L2 3121 3272 0 1533 107 19 11 chr4 80919449 80919712 -103368950 + L1MA5A LINE L1 6022 6286 -11 2190 92 13 26 chr4 80920518 80920824 -103367838 - AluSp SINE Alu -11 302 1 2464 83 0 0 chr4 80920887 80921189 -103367473 - AluY SINE Alu -9 302 1 2152 154 27 0 chr4 80921379 80921755 -103366907 - MLT1B LTR MaLR -4 386 1 189 0 0 0 chr4 80922101 80922122 -103366540 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 207 0 0 0 chr4 80922462 80922485 -103366177 + (T)n Simple_repeat Simple_repeat 1 23 0 278 368 50 20 chr4 80922819 80923020 -103365642 + L2 LINE L2 1501 1707 -1607 1127 289 88 9 chr4 80923051 80923508 -103365154 + L2 LINE L2 1661 2153 -1161 681 352 104 28 chr4 80923511 80923604 -103365058 + L2 LINE L2 2606 2690 -582 371 118 26 13 chr4 80923604 80923680 -103364982 - L1MC2 LINE L1 -11 6333 6257 681 352 104 28 chr4 80923680 80924204 -103364458 + L2 LINE L2 2690 3271 -1 183 80 0 0 chr4 80924205 80924230 -103364432 + (GGAA)n Simple_repeat Simple_repeat 2 26 0 243 0 0 0 chr4 80924944 80924971 -103363691 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1753 107 0 0 chr4 80925789 80926013 -103362649 - AluSq SINE Alu -56 257 34 1933 196 60 11 chr4 80926014 80926193 -103362469 - L1M4 LINE L1 -698 5486 5317 483 18 0 0 chr4 80926193 80926249 -103362413 + (TTA)n Simple_repeat Simple_repeat 2 57 0 1933 196 60 11 chr4 80926249 80926673 -103361989 - L1M4 LINE L1 -867 5317 4860 334 347 155 30 chr4 80927138 80927440 -103361222 + L2 LINE L2 2442 2705 -608 2831 16 0 0 chr4 80927440 80927751 -103360911 - AluY SINE Alu 0 311 1 334 347 155 30 chr4 80927751 80927995 -103360667 + L2 LINE L2 2705 3049 -264 1717 134 49 11 chr4 80928050 80928334 -103360328 - AluSx SINE Alu -17 295 1 389 230 102 66 chr4 80928729 80928925 -103359737 - MIR SINE MIR 0 262 60 221 296 0 14 chr4 80930416 80930487 -103358175 - MIR SINE MIR -75 187 118 345 193 0 0 chr4 80931152 80931209 -103357453 + AluJ/FLAM SINE Alu 1 57 -245 225 0 0 0 chr4 80931218 80931243 -103357419 + (A)n Simple_repeat Simple_repeat 1 25 0 900 173 0 0 chr4 80931255 80931405 -103357257 + AluJb SINE Alu 161 310 -2 198 0 0 0 chr4 80931849 80931871 -103356791 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 6344 52 3 0 chr4 80933866 80934649 -103354013 - L1PA5 LINE L1 0 6154 5370 221 296 0 14 chr4 80937231 80937302 -103351360 - MIR SINE MIR -75 187 118 360 0 0 0 chr4 80938035 80938075 -103350587 + (A)n Simple_repeat Simple_repeat 1 40 0 900 173 0 0 chr4 80938087 80938237 -103350425 + AluJb SINE Alu 161 310 -2 198 0 0 0 chr4 80938681 80938703 -103349959 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 585 195 0 18 chr4 80939798 80939911 -103348751 + FLAM_C SINE Alu 1 111 -32 538 100 40 33 chr4 80939935 80940085 -103348577 + (TA)n Simple_repeat Simple_repeat 2 152 0 827 205 0 19 chr4 80940085 80940246 -103348416 + FRAM SINE Alu 1 158 -18 2142 110 0 13 chr4 80941284 80941594 -103347068 - AluSg SINE Alu -4 306 1 2457 42 0 0 chr4 80942063 80942347 -103346315 + AluY SINE Alu 1 284 -27 222 37 0 0 chr4 80942350 80942377 -103346285 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 28 29 0 0 chr4 80942423 80942458 -103346204 + AT_rich Low_complexity Low_complexity 1 35 0 2199 96 20 3 chr4 80944215 80944508 -103344154 - AluSq SINE Alu -15 298 1 267 31 0 0 chr4 80944587 80944619 -103344043 + (CAG)n Simple_repeat Simple_repeat 1 32 0 410 209 80 126 chr4 80944690 80944929 -103343733 - L2 LINE L2 -38 3275 3048 2197 116 6 6 chr4 80945127 80945438 -103343224 - AluSx SINE Alu 0 312 2 441 245 115 51 chr4 80945815 80946032 -103342630 - L1MC4a LINE L1 -223 5898 5669 282 253 13 0 chr4 80946077 80946156 -103342506 - MER116 DNA Mariner 0 80 1 425 271 57 81 chr4 80947246 80947492 -103341170 + MIR SINE MIR 16 252 -10 3431 136 11 44 chr4 80948405 80949059 -103339603 - L1MA4 LINE L1 -4 6296 5665 311 349 26 32 chr4 80949414 80949603 -103339059 + MIR SINE MIR 20 207 -55 2270 78 0 0 chr4 80950261 80950572 -103338090 - AluSx SINE Alu 0 311 1 486 321 57 21 chr4 80952855 80953048 -103335614 - MIR SINE MIR -42 220 21 249 167 0 0 chr4 80953927 80953981 -103334681 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 415 202 211 9 chr4 80956784 80956898 -103331764 + MER5A DNA MER1_type 39 175 -14 1938 178 27 0 chr4 80957193 80957530 -103331132 + MER7A DNA MER2_type 1 344 -2 201 235 20 0 chr4 80957711 80957762 -103330900 + (CA)n Simple_repeat Simple_repeat 1 52 0 23 0 0 0 chr4 80958482 80958505 -103330157 + AT_rich Low_complexity Low_complexity 1 23 0 1920 91 0 122 chr4 80958789 80959118 -103329544 + AluSg SINE Alu 2 290 -10 438 181 24 0 chr4 80959149 80959232 -103329430 - MER34 LTR ERV1 0 542 458 215 250 0 0 chr4 80959843 80959895 -103328767 + (TA)n Simple_repeat Simple_repeat 2 53 0 240 163 0 0 chr4 80959948 80959991 -103328671 + CT-rich Low_complexity Low_complexity 3 45 0 1627 73 10 5 chr4 80960012 80960218 -103328444 - AluSg SINE Alu -103 207 1 516 298 2 36 chr4 80960933 80961102 -103327560 - MIR3 SINE MIR -3 205 37 3059 166 16 0 chr4 80961445 80961957 -103326705 - MLT2B1 LTR ERVL 0 520 1 2067 150 3 0 chr4 80962032 80962338 -103326324 - AluSx SINE Alu -3 309 3 24 53 0 0 chr4 80962378 80962416 -103326246 + AT_rich Low_complexity Low_complexity 1 38 0 372 308 15 0 chr4 80962559 80962689 -103325973 - MER94 DNA DNA 0 134 3 238 352 0 0 chr4 80963630 80963701 -103324961 + L2 LINE L2 2726 2796 -518 256 329 68 0 chr4 80965210 80965283 -103323379 - L2 LINE L2 0 3313 3236 345 295 52 65 chr4 80965394 80965655 -103323007 - L2 LINE L2 -119 3194 2938 2297 111 36 25 chr4 80965655 80966015 -103322647 - THE1B LTR MaLR 0 364 1 345 295 52 65 chr4 80966015 80966139 -103322523 - L2 LINE L2 -375 2938 2814 26 30 0 0 chr4 80967546 80967579 -103321083 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr4 80968142 80968166 -103320496 + AT_rich Low_complexity Low_complexity 1 24 0 506 315 50 28 chr4 80968745 80968926 -103319736 + MIR3 SINE MIR 16 200 -8 2290 103 0 6 chr4 80970492 80970803 -103317859 - AluSg SINE Alu -1 309 1 2166 130 0 9 chr4 80972083 80972398 -103316264 + AluSx SINE Alu 1 312 0 234 319 65 12 chr4 80973593 80973762 -103314900 - L1ME LINE L1 -288 5833 5656 353 254 46 75 chr4 80974809 80974982 -103313680 - MER91A DNA MER1_type -26 170 3 573 28 0 0 chr4 80975236 80975307 -103313355 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 230 297 22 22 chr4 80975488 80975579 -103313083 - MIR SINE MIR 0 262 172 219 62 21 42 chr4 80975790 80975838 -103312824 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 222 303 49 33 chr4 80976413 80976535 -103312127 - MIR3 SINE MIR -4 204 81 23 0 0 0 chr4 80976814 80976837 -103311825 + AT_rich Low_complexity Low_complexity 1 23 0 221 167 0 0 chr4 80977314 80977356 -103311306 + L2 LINE L2 3186 3227 -86 1878 236 8 20 chr4 80979259 80979653 -103309009 + MER21B LTR ERV1 12 400 -463 675 251 37 6 chr4 80980357 80980520 -103308142 - MER5A DNA MER1_type -21 168 1 789 268 136 35 chr4 80981792 80982161 -103306501 + MLT1I LTR MaLR 4 409 0 2129 127 0 0 chr4 80984836 80985135 -103303527 - AluSg SINE Alu -11 299 1 219 114 0 0 chr4 80986581 80986616 -103302046 + (CA)n Simple_repeat Simple_repeat 2 36 0 458 227 8 25 chr4 80986801 80986920 -103301742 - MLT1K LTR MaLR -8 580 464 1399 205 73 81 chr4 80986927 80987539 -103301123 - LTR41 LTR ERVL -7 766 97 2554 51 3 3 chr4 80987539 80987850 -103300812 - AluY SINE Alu 0 311 1 1399 205 73 81 chr4 80987850 80987922 -103300740 - LTR41 LTR ERVL -676 97 26 1163 234 56 70 chr4 80988599 80989117 -103299545 + L1MD2 LINE L1 5831 6341 -18 3999 237 58 20 chr4 80989373 80990633 -103298029 + L1MC4a LINE L1 6538 7803 -5 352 256 8 8 chr4 80990867 80990992 -103297670 + GA-rich Low_complexity Low_complexity 2 126 0 2193 118 3 0 chr4 80992889 80993194 -103295468 + AluSp SINE Alu 2 307 -6 213 337 112 30 chr4 80993347 80993516 -103295146 + MIR SINE MIR 64 246 -16 23 0 0 0 chr4 80994276 80994299 -103294363 + AT_rich Low_complexity Low_complexity 1 23 0 985 145 0 24 chr4 80994313 80994479 -103294183 - AluSg/x SINE Alu 0 312 151 24 32 0 0 chr4 80995084 80995115 -103293547 + AT_rich Low_complexity Low_complexity 1 31 0 28 29 0 0 chr4 80997460 80997495 -103291167 + AT_rich Low_complexity Low_complexity 1 35 0 2329 56 0 0 chr4 80997496 80997782 -103290880 - L1PA7 LINE L1 -9 6145 5860 377 293 78 91 chr4 81000273 81000505 -103288157 + MIR SINE MIR 32 260 -2 257 286 0 39 chr4 81000606 81000683 -103287979 + MIR SINE MIR 78 151 -111 405 263 0 58 chr4 81000791 81000928 -103287734 + MIR SINE MIR 1 129 -133 23 33 0 0 chr4 81001219 81001249 -103287413 + AT_rich Low_complexity Low_complexity 1 30 0 2144 120 0 0 chr4 81002271 81002588 -103286074 + AluSx SINE Alu 1 317 0 24 32 0 0 chr4 81003995 81004026 -103284636 + AT_rich Low_complexity Low_complexity 1 31 0 2714 124 70 18 chr4 81004039 81004171 -103284491 - L1MA9 LINE L1 -5 6307 6183 311 60 20 0 chr4 81004171 81004221 -103284441 + (TA)n Simple_repeat Simple_repeat 2 52 0 2714 124 70 18 chr4 81004221 81004235 -103284427 - L1MA9 LINE L1 -129 6183 6171 2034 149 36 33 chr4 81004235 81004598 -103284064 - THE1B LTR MaLR 0 364 1 11398 100 7 8 chr4 81004598 81006180 -103282482 - THE1B-int LTR MaLR 0 1580 1 2027 142 39 28 chr4 81006180 81006540 -103282122 - THE1B LTR MaLR 0 364 1 2714 124 70 18 chr4 81006540 81006891 -103281771 - L1MA9 LINE L1 -140 6172 5781 2887 155 36 17 chr4 81007016 81007865 -103280797 - L1MA9 LINE L1 -521 5791 4922 21 36 0 0 chr4 81008371 81008399 -103280263 + AT_rich Low_complexity Low_complexity 1 28 0 350 274 150 9 chr4 81009722 81009835 -103278827 - MIR SINE MIR -63 145 17 1963 94 0 4 chr4 81010014 81010268 -103278394 + AluSx SINE Alu 1 253 -59 1177 97 7 0 chr4 81010269 81010424 -103278238 + MSTA LTR MaLR 268 423 -5 3808 139 10 3 chr4 81010427 81011022 -103277640 + L1PA15 LINE L1 5560 6158 -7 311 255 120 47 chr4 81011145 81011337 -103277325 + L1ME LINE L1 5617 5822 -299 21 0 0 0 chr4 81011338 81011359 -103277303 + AT_rich Low_complexity Low_complexity 1 21 0 1417 219 0 37 chr4 81011765 81012062 -103276600 - AluJo SINE Alu -26 286 1 26 30 0 0 chr4 81012082 81012115 -103276547 + AT_rich Low_complexity Low_complexity 1 33 0 228 67 0 0 chr4 81013468 81013498 -103275164 + (TTTC)n Simple_repeat Simple_repeat 1 30 0 381 234 183 10 chr4 81013517 81013714 -103274948 - L1ME4a LINE L1 -32 6089 5859 290 240 21 0 chr4 81014177 81014273 -103274389 + CT-rich Low_complexity Low_complexity 3 100 0 2195 125 3 6 chr4 81015186 81015499 -103273163 + AluSx SINE Alu 1 312 0 297 272 74 0 chr4 81016359 81016440 -103272222 + MIR SINE MIR 128 214 -48 186 267 22 0 chr4 81017124 81017169 -103271493 - MIR SINE MIR -115 147 102 504 0 0 0 chr4 81017839 81017895 -103270767 + (TG)n Simple_repeat Simple_repeat 2 57 0 25 0 0 0 chr4 81019582 81019607 -103269055 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr4 81021550 81021575 -103267087 + AT_rich Low_complexity Low_complexity 1 25 0 1818 182 0 0 chr4 81021999 81022295 -103266367 + AluJb SINE Alu 3 298 -14 2892 179 18 7 chr4 81022335 81022887 -103265775 - MER74A LTR ERVL 0 558 1 270 310 164 0 chr4 81024264 81024380 -103264282 + MIR SINE MIR 15 149 -113 2418 41 17 10 chr4 81025654 81025949 -103262713 + AluY SINE Alu 1 297 -14 2053 116 3 0 chr4 81026175 81026467 -103262195 - AluSx SINE Alu -7 305 13 1453 203 130 28 chr4 81026760 81027184 -103261478 - MLT1C LTR MaLR 0 467 1 441 253 173 13 chr4 81027272 81027422 -103261240 + MER5A DNA MER1_type 10 183 -6 480 206 226 45 chr4 81028558 81028757 -103259905 - MIR SINE MIR -26 236 2 2381 68 0 7 chr4 81028810 81029102 -103259560 + AluY SINE Alu 1 290 -21 23 54 0 0 chr4 81029662 81029699 -103258963 + AT_rich Low_complexity Low_complexity 1 37 0 2183 84 0 0 chr4 81029947 81030222 -103258440 - AluSc SINE Alu -13 296 22 2247 95 0 52 chr4 81030333 81030659 -103258003 - AluSg SINE Alu -1 309 1 186 103 0 0 chr4 81030707 81030736 -103257926 + (CAAAA)n Simple_repeat Simple_repeat 4 32 0 525 279 201 9 chr4 81031816 81032035 -103256627 + MIR SINE MIR 2 262 0 23 33 0 0 chr4 81032352 81032382 -103256280 + AT_rich Low_complexity Low_complexity 1 30 0 414 339 40 6 chr4 81032782 81032956 -103255706 + MIR SINE MIR 22 201 -61 398 274 146 32 chr4 81033300 81033519 -103255143 - MIR SINE MIR -14 248 5 188 325 13 52 chr4 81033758 81033835 -103254827 + MIR3 SINE MIR 6 79 -129 202 304 0 0 chr4 81033853 81033899 -103254763 - MIR SINE MIR -170 92 47 45 0 0 0 chr4 81033970 81034015 -103254647 + AT_rich Low_complexity Low_complexity 1 45 0 294 343 9 9 chr4 81034781 81034886 -103253776 + L2 LINE L2 3168 3272 0 205 156 0 0 chr4 81035011 81035043 -103253619 + (CA)n Simple_repeat Simple_repeat 1 32 0 471 283 65 0 chr4 81035815 81035953 -103252709 - MIR SINE MIR -81 181 35 2319 109 3 0 chr4 81036387 81036699 -103251963 - AluSq SINE Alu 0 313 1 21 0 0 0 chr4 81036701 81036722 -103251940 + AT_rich Low_complexity Low_complexity 1 21 0 837 279 77 77 chr4 81037748 81038228 -103250434 - L2 LINE L2 -1 3312 2833 3227 66 7 0 chr4 81038685 81039095 -103249567 - L1PA6 LINE L1 -7 6147 5735 35747 87 4 9 chr4 81039097 81044105 -103244557 - L1PA6 LINE L1 -1150 4996 11 1947 104 9 87 chr4 81044141 81044476 -103244186 + AluSc SINE Alu 1 309 0 1183 138 0 6 chr4 81044480 81044661 -103244001 + AluSg/x SINE Alu 130 309 -1 1085 82 7 0 chr4 81045923 81046058 -103242604 + AluSq/x SINE Alu 3 138 -175 1607 84 101 0 chr4 81046059 81046286 -103242376 + AluSq SINE Alu 54 303 -10 26 50 0 0 chr4 81046392 81046432 -103242230 + AT_rich Low_complexity Low_complexity 1 40 0 1148 219 12 18 chr4 81046439 81046796 -103241866 - L1ME LINE L1 -437 5727 5319 21 36 0 0 chr4 81046929 81046957 -103241705 + AT_rich Low_complexity Low_complexity 1 28 0 2045 151 3 0 chr4 81046968 81047266 -103241396 - AluSx SINE Alu -13 299 1 370 213 117 11 chr4 81047601 81047695 -103240967 - L2 LINE L2 -8 3305 3202 468 128 0 0 chr4 81049662 81049740 -103238922 + (CA)n Simple_repeat Simple_repeat 1 78 0 276 30 0 0 chr4 81051493 81051526 -103237136 + (CA)n Simple_repeat Simple_repeat 1 33 0 2930 116 7 12 chr4 81052652 81053083 -103235579 - MER57B LTR ERV1 -5 429 1 702 320 140 50 chr4 81053089 81054057 -103234605 + L2 LINE L2 2230 3310 -3 3530 145 61 4 chr4 81054248 81054807 -103233855 - LTR9 LTR ERV1 -21 591 1 23 0 0 0 chr4 81055384 81055407 -103233255 + AT_rich Low_complexity Low_complexity 1 23 0 239 234 172 0 chr4 81055826 81055890 -103232772 + L2 LINE L2 2988 3062 -251 292 178 13 57 chr4 81055937 81056094 -103232568 + (TAA)n Simple_repeat Simple_repeat 1 150 0 187 368 0 0 chr4 81056677 81056753 -103231909 - MIR SINE MIR -126 136 61 410 332 42 0 chr4 81057131 81057324 -103231338 + LTR33 LTR ERVL 14 214 -307 196 321 182 38 chr4 81057558 81057717 -103230945 + MIR SINE MIR 54 235 -27 21 71 0 0 chr4 81057993 81058035 -103230627 + AT_rich Low_complexity Low_complexity 1 42 0 328 158 26 0 chr4 81058341 81058417 -103230245 + (TA)n Simple_repeat Simple_repeat 1 78 0 2861 165 31 12 chr4 81058427 81058980 -103229682 - MER4D LTR ERV1 -4 850 197 374 193 73 37 chr4 81058980 81059089 -103229573 + L1MC3 LINE L1 6914 7026 -759 * 1124 114 127 38 chr4 81059076 81059313 -103229349 + L1MC3 LINE L1 7518 7775 -10 970 229 31 31 chr4 81060378 81060636 -103228026 + MIR SINE MIR 5 262 0 1086 221 95 6 chr4 81061682 81062007 -103226655 - MER69 DNA AcHobo -1 2525 2172 747 219 53 5 chr4 81062009 81062286 -103226376 - MER69 DNA AcHobo -2206 320 2 2218 100 3 7 chr4 81062795 81063094 -103225568 - AluSx SINE Alu -14 298 1 1830 164 7 13 chr4 81063094 81063399 -103225263 - AluSx SINE Alu -8 304 2 414 322 97 22 chr4 81063618 81063845 -103224817 + MIR SINE MIR 8 251 -11 190 260 122 65 chr4 81063927 81064050 -103224612 - L2 LINE L2 -6 3266 3137 22 70 0 0 chr4 81064425 81064468 -103224194 + AT_rich Low_complexity Low_complexity 1 43 0 441 107 65 6 chr4 81065247 81065415 -103223247 + (TA)n Simple_repeat Simple_repeat 2 179 0 33 0 0 0 chr4 81065418 81065451 -103223211 + AT_rich Low_complexity Low_complexity 1 33 0 506 96 78 0 chr4 81065455 81065621 -103223041 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 47 0 0 0 chr4 81065621 81065668 -103222994 + AT_rich Low_complexity Low_complexity 1 47 0 419 109 79 0 chr4 81065668 81065833 -103222829 + (TA)n Simple_repeat Simple_repeat 2 179 0 1937 139 0 4 chr4 81065858 81066138 -103222524 - AluSx SINE Alu -33 279 1 1207 269 146 14 chr4 81066262 81066824 -103221838 - Charlie7 DNA MER1_type -1953 659 24 1835 183 0 7 chr4 81067440 81067746 -103220916 + AluJo SINE Alu 3 306 -6 278 184 13 26 chr4 81068239 81068315 -103220347 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 22 0 0 0 chr4 81068689 81068711 -103219951 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr4 81069566 81069601 -103219061 + AT_rich Low_complexity Low_complexity 1 35 0 246 178 22 0 chr4 81069715 81069760 -103218902 - Tigger7 DNA MER2_type 0 2491 2446 246 208 57 0 chr4 81069767 81069873 -103218789 + (TTTAA)n Simple_repeat Simple_repeat 5 116 0 1033 138 254 44 chr4 81069880 81070155 -103218507 - MER1B DNA MER1_type -1 336 4 1847 94 51 0 chr4 81070159 81070435 -103218227 - Tigger7 DNA MER2_type -79 2508 2219 3583 144 64 62 chr4 81070436 81070615 -103218047 - Tigger7 DNA MER2_type -1717 770 593 216 0 0 0 chr4 81070615 81070639 -103218023 + (TG)n Simple_repeat Simple_repeat 1 24 0 2114 39 0 4 chr4 81070639 81070897 -103217765 - AluY SINE Alu -33 278 22 3583 144 64 62 chr4 81070897 81071430 -103217232 - Tigger7 DNA MER2_type -1893 594 55 216 202 258 0 chr4 81071884 81071973 -103216689 - L2 LINE L2 -93 3220 3109 419 335 37 17 chr4 81072241 81072432 -103216230 + MIR SINE MIR 16 207 -55 340 347 66 18 chr4 81072544 81072711 -103215951 + MIR3 SINE MIR 32 206 -2 188 252 87 87 chr4 81073396 81073511 -103215151 - MER5B DNA MER1_type -2 176 62 186 279 23 0 chr4 81074000 81074043 -103214619 + MIR3 SINE MIR 114 157 -51 23 0 0 0 chr4 81077428 81077451 -103211211 + AT_rich Low_complexity Low_complexity 1 23 0 2287 111 3 0 chr4 81078212 81078519 -103210143 + AluSg SINE Alu 2 309 -1 3493 95 2 15 chr4 81078702 81079226 -103209436 - L1PA13 LINE L1 0 6163 5647 228 371 59 64 chr4 81080410 81080935 -103207727 - L2 LINE L2 -6 3266 2706 194 322 149 0 chr4 81080936 81081023 -103207639 + L2 LINE L2 3189 3288 -25 225 389 43 11 chr4 81081074 81081259 -103207403 - L2 LINE L2 -645 2669 2479 21406 27 0 0 chr4 81081310 81083872 -103204790 - L1P LINE L1 -1852 4294 1732 2891 18 0 0 chr4 81083873 81084205 -103204457 + L1HS LINE L1 5824 6155 0 1105 111 4 119 chr4 81084732 81084774 -103203888 + L1PB2 LINE L1 5941 5986 -165 1978 149 0 9 chr4 81084774 81085089 -103203573 + AluSx SINE Alu 1 312 0 1105 111 4 119 chr4 81085089 81085281 -103203381 + L1PB2 LINE L1 5986 6148 -3 207 100 0 0 chr4 81087530 81087560 -103201102 + (TTA)n Simple_repeat Simple_repeat 1 30 0 242 203 0 0 chr4 81088054 81088118 -103200544 - L1MC4 LINE L1 -1339 6703 6640 187 30 30 30 chr4 81088233 81088266 -103200396 + (TTA)n Simple_repeat Simple_repeat 1 33 0 2155 108 14 0 chr4 81088807 81089103 -103199559 - AluSq SINE Alu -13 300 1 673 203 0 15 chr4 81089825 81089958 -103198704 + FLAM_C SINE Alu 1 131 -12 1909 99 95 4 chr4 81090512 81090785 -103197877 - AluSq SINE Alu -15 298 1 210 154 0 0 chr4 81091430 81091469 -103197193 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2840 62 3 0 chr4 81091868 81092237 -103196425 - L1PA8 LINE L1 0 6172 5803 2164 109 0 3 chr4 81092660 81092964 -103195698 - AluSx SINE Alu -9 303 1 396 297 14 36 chr4 81093695 81093833 -103194829 - MER5B DNA MER1_type -23 155 21 1795 168 77 48 chr4 81094156 81094572 -103194090 - MSTA LTR MaLR 0 428 1 202 185 19 19 chr4 81095101 81095155 -103193507 + (TTTAA)n Simple_repeat Simple_repeat 3 56 0 218 260 0 0 chr4 81095528 81095578 -103193084 + CT-rich Low_complexity Low_complexity 3 52 0 653 201 141 5 chr4 81096444 81096628 -103192034 - MER96B DNA MER1_type? -165 252 44 26 64 0 0 chr4 81097366 81097413 -103191249 + AT_rich Low_complexity Low_complexity 1 47 0 201 226 0 0 chr4 81097632 81097685 -103190977 + (TG)n Simple_repeat Simple_repeat 2 54 0 193 365 48 39 chr4 81097749 81097853 -103190809 + L2 LINE L2 3132 3236 -36 5224 176 195 54 chr4 81099896 81101434 -103187228 - MER52A LTR ERV1 0 1755 1 22 70 0 0 chr4 81102787 81102830 -103185832 + AT_rich Low_complexity Low_complexity 1 43 0 780 299 156 35 chr4 81103078 81103674 -103184988 + L2 LINE L2 1612 2279 -1035 453 184 35 11 chr4 81103673 81103760 -103184902 + L2 LINE L2 3225 3313 0 * 190 277 0 0 chr4 81103773 81103820 -103184842 + MIR SINE MIR 160 206 -56 737 239 26 7 chr4 81104376 81104531 -103184131 - MER5A DNA MER1_type -1 188 31 6835 59 32 0 chr4 81105486 81106450 -103182212 - L1PA7 LINE L1 -3 6151 5177 298 163 0 0 chr4 81106450 81106499 -103182163 - L1P LINE L1 -3512 2634 2586 254 143 0 0 chr4 81106500 81106542 -103182120 + L1P LINE L1 2627 2668 -3478 24 0 0 0 chr4 81106564 81106588 -103182074 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4 81106905 81106927 -103181735 + AT_rich Low_complexity Low_complexity 1 22 0 6630 29 1 0 chr4 81106975 81107783 -103180879 - L1PA3 LINE L1 -3 6152 5344 278 209 101 36 chr4 81108137 81108276 -103180386 - L1ME4a LINE L1 -11 6110 5963 21 57 0 0 chr4 81108313 81108348 -103180314 + AT_rich Low_complexity Low_complexity 1 35 0 28 79 0 0 chr4 81108477 81108540 -103180122 + AT_rich Low_complexity Low_complexity 1 63 0 258 313 45 86 chr4 81110273 81110406 -103178256 - MIR SINE MIR -10 252 132 6279 81 9 21 chr4 81110406 81111617 -103177045 + L1PA13 LINE L1 4957 6161 -2 258 313 45 86 chr4 81111617 81111726 -103176936 - MIR SINE MIR -130 132 20 1672 128 7 24 chr4 81111763 81112051 -103176611 + MER1B DNA MER1_type 57 339 0 299 315 31 8 chr4 81114929 81115059 -103173603 - MER94 DNA DNA -1 133 1 2118 202 64 24 chr4 81115165 81115846 -103172816 + Tigger7 DNA MER2_type 2 2587 0 24 91 0 0 chr4 81116626 81116692 -103171970 + AT_rich Low_complexity Low_complexity 1 66 0 299 288 51 42 chr4 81116811 81116929 -103171733 - MIR3 SINE MIR -49 159 41 2231 163 13 15 chr4 81117129 81117584 -103171078 + L1MB8 LINE L1 5725 6178 0 484 178 0 23 chr4 81118275 81118404 -103170258 + CT-rich Low_complexity Low_complexity 3 128 0 2066 108 0 14 chr4 81118512 81118823 -103169839 - AluSx SINE Alu 0 307 1 221 417 0 12 chr4 81119033 81119117 -103169545 + MIR3 SINE MIR 72 154 -54 25 0 0 0 chr4 81121129 81121154 -103167508 + AT_rich Low_complexity Low_complexity 1 25 0 180 0 0 0 chr4 81122497 81122517 -103166145 + (T)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr4 81123330 81123351 -103165311 + AT_rich Low_complexity Low_complexity 1 21 0 180 111 0 0 chr4 81124568 81124595 -103164067 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2025 121 0 0 chr4 81124603 81124876 -103163786 - AluSx SINE Alu -39 273 1 180 219 0 0 chr4 81124962 81125003 -103163659 + (CA)n Simple_repeat Simple_repeat 2 42 0 450 365 77 9 chr4 81125616 81125838 -103162824 + MIR SINE MIR 6 242 -20 195 362 43 0 chr4 81126395 81126464 -103162198 - L2 LINE L2 0 3272 3201 39 60 0 0 chr4 81126614 81126681 -103161981 + AT_rich Low_complexity Low_complexity 1 67 0 221 235 20 0 chr4 81126988 81127039 -103161623 + L2 LINE L2 3261 3312 -1 203 320 13 0 chr4 81127112 81127187 -103161475 - L2 LINE L2 -557 2757 2682 349 373 126 27 chr4 81127289 81127925 -103160737 - L2 LINE L2 -814 2500 1802 727 274 29 10 chr4 81129067 81129275 -103159387 + MIR SINE MIR 29 240 -22 490 303 69 27 chr4 81129421 81129609 -103159053 + MIR SINE MIR 23 218 -44 183 365 52 0 chr4 81130053 81130149 -103158513 - L3b LINE CR1 -59 1524 1424 536 291 17 0 chr4 81131294 81131469 -103157193 + MER97b DNA MER1_type? 2 179 -874 21 36 0 0 chr4 81132954 81132982 -103155680 + AT_rich Low_complexity Low_complexity 1 28 0 245 271 113 23 chr4 81133099 81133276 -103155386 - L1ME LINE L1 -317 5804 5612 1024 191 42 9 chr4 81133308 81133523 -103155139 - MLT1A1 LTR MaLR 0 365 144 6228 45 5 1 chr4 81133525 81134325 -103154337 - L1PA7 LINE L1 -1 6153 5351 1817 83 18 0 chr4 81134425 81134703 -103153959 - L1PA7 LINE L1 -784 5362 5080 2310 104 7 0 chr4 81134900 81135207 -103153455 - AluSp SINE Alu -4 309 1 1443 150 0 5 chr4 81135207 81135427 -103153235 - AluSg/x SINE Alu -16 296 78 782 142 14 0 chr4 81135635 81135783 -103152879 - L1P LINE L1 -968 5178 5029 * 5728 145 10 1 chr4 81135781 81136778 -103151884 + L1P LINE L1 3856 4861 -1285 1711 155 41 41 chr4 81137026 81137367 -103151295 - MER7A DNA MER2_type -7 339 1 398 238 60 18 chr4 81138994 81139162 -103149500 + L1MEd LINE L1 11 185 -5934 667 155 65 26 chr4 81140451 81140606 -103148056 + Tigger3(Golem) DNA MER2_type 2868 3028 -1 387 202 45 0 chr4 81140627 81140716 -103147946 + MLT1G LTR MaLR 498 590 0 236 225 56 28 chr4 81142633 81142704 -103145958 - MIR3 SINE MIR -23 185 113 267 291 45 0 chr4 81144038 81144172 -103144490 + L1M4 LINE L1 4471 4610 -1536 187 368 26 26 chr4 81144568 81144685 -103143977 + MIR SINE MIR 7 123 -139 404 295 107 41 chr4 81144834 81145105 -103143557 - L1M4 LINE L1 -1487 4659 4371 316 230 195 0 chr4 81145212 81145299 -103143363 + L1MC4 LINE L1 6692 6795 -1247 319 258 108 54 chr4 81145324 81145491 -103143171 + L1MC4 LINE L1 6620 6795 -1247 361 270 117 12 chr4 81145520 81145683 -103142979 + L1MC4 LINE L1 6616 6795 -1247 2647 201 127 22 chr4 81145712 81146525 -103142137 + L1MC4 LINE L1 6616 7513 -529 1199 244 58 0 chr4 81146531 81146859 -103141803 + L1MC4 LINE L1 7555 7901 -141 207 278 0 0 chr4 81148566 81148620 -103140042 + MIR SINE MIR 95 148 -60 966 105 4 0 chr4 81148878 81149108 -103139554 + (TA)n Simple_repeat Simple_repeat 1 231 0 250 248 171 29 chr4 81151597 81151702 -103136960 - MIR SINE MIR -59 149 30 386 188 0 0 chr4 81152629 81152693 -103135969 + MER53 DNA DNA 3 66 -123 2355 121 25 108 chr4 81152693 81153204 -103135458 + LTR1 LTR ERV1 1 469 -316 520 329 6 30 chr4 81153417 81153584 -103135078 + L2 LINE L2 3075 3237 -35 189 107 0 0 chr4 81153630 81153658 -103135004 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 376 262 81 34 chr4 81154542 81154691 -103133971 + MLT1K LTR MaLR 421 576 -12 422 269 37 20 chr4 81155268 81155449 -103133213 - MIR3 SINE MIR -3 205 20 587 259 56 78 chr4 81155698 81155964 -103132698 + MIR SINE MIR 1 262 0 181 118 0 59 chr4 81156074 81156108 -103132554 - L2 LINE L2 -212 3060 3029 400 276 55 21 chr4 81156717 81156862 -103131800 + MIR SINE MIR 74 223 -39 716 137 40 0 chr4 81157792 81157916 -103130746 + L1MB5 LINE L1 5773 5901 -273 466 238 83 42 chr4 81160138 81160306 -103128356 + MIR3 SINE MIR 15 189 -19 854 232 50 46 chr4 81161083 81161324 -103127338 + MIR SINE MIR 21 262 0 206 220 40 0 chr4 81161350 81161400 -103127262 + L2 LINE L2 3262 3313 0 2218 97 7 3 chr4 81162793 81163092 -103125570 + AluSg SINE Alu 1 300 -10 2430 114 24 38 chr4 81163199 81163568 -103125094 - THE1B LTR MaLR 0 364 1 5848 134 3 3 chr4 81163641 81164695 -103123967 - L1PA16 LINE L1 0 6166 5105 866 168 60 0 chr4 81164724 81164873 -103123789 - MLT1A1 LTR MaLR -207 158 1 290 302 47 0 chr4 81165038 81165167 -103123495 + L1MC/D LINE L1 5679 5813 -1995 225 170 21 21 chr4 81166559 81166606 -103122056 - MLT1H-int LTR MaLR -1320 51 5 607 282 73 80 chr4 81166616 81167080 -103121582 - MLT1H LTR MaLR -6 543 83 565 265 129 116 chr4 81167145 81167524 -103121138 - L2 LINE L2 0 3313 2941 1501 185 13 36 chr4 81167524 81167827 -103120835 + AluJo SINE Alu 1 296 -16 565 265 129 116 chr4 81167827 81167977 -103120685 - L2 LINE L2 -372 2941 2790 2096 120 16 29 chr4 81167977 81168293 -103120369 - AluSx SINE Alu 0 312 1 565 265 129 116 chr4 81168293 81168401 -103120261 - L2 LINE L2 -523 2790 2685 213 222 37 28 chr4 81169226 81169334 -103119328 + (TTTAA)n Simple_repeat Simple_repeat 3 111 0 343 206 95 132 chr4 81169507 81169696 -103118966 - L1ME4a LINE L1 -218 5903 5722 222 362 71 35 chr4 81170812 81170953 -103117709 - MER5A DNA MER1_type -1 188 43 226 310 35 0 chr4 81170972 81171059 -103117603 + L2 LINE L2 3155 3244 -28 363 295 70 40 chr4 81171643 81171843 -103116819 + L2 LINE L2 3104 3309 -4 314 28 0 0 chr4 81171884 81171920 -103116742 + U6 snRNA snRNA 1 36 -71 247 0 0 0 chr4 81171965 81171992 -103116670 + U6 snRNA snRNA 10 36 -71 2299 77 0 7 chr4 81172039 81172348 -103116314 + AluSp SINE Alu 1 307 0 1163 240 28 8 chr4 81172639 81172691 -103115971 - MLT1C LTR MaLR 0 467 418 216 0 0 0 chr4 81172691 81172715 -103115947 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1163 240 28 8 chr4 81172715 81172916 -103115746 - MLT1C LTR MaLR -49 418 209 182 269 19 19 chr4 81172919 81172971 -103115691 - MER5A DNA MER1_type -136 53 2 1003 266 99 29 chr4 81173682 81173719 -103114943 + MER113 DNA MER1_type? 2 35 -486 6059 60 31 35 chr4 81173719 81174502 -103114160 - LTR17 LTR ERV1 0 780 1 1003 266 99 29 chr4 81174502 81174948 -103113714 + MER113 DNA MER1_type? 35 519 -2 324 252 54 36 chr4 81175456 81175567 -103113095 + MIR SINE MIR 66 178 -84 2907 210 98 12 chr4 81175966 81176280 -103112382 - L1MB7 LINE L1 0 6184 5898 4097 96 30 6 chr4 81176280 81176821 -103111841 - MER41A LTR ERV1 0 554 1 2907 210 98 12 chr4 81176821 81177274 -103111388 - L1MB7 LINE L1 -286 5898 5349 385 320 0 16 chr4 81177786 81177911 -103110751 + L2 LINE L2 3190 3312 -1 28 61 0 0 chr4 81179006 81179055 -103109607 + AT_rich Low_complexity Low_complexity 1 49 0 186 189 0 0 chr4 81179081 81179118 -103109544 + (CA)n Simple_repeat Simple_repeat 2 38 0 182 204 0 19 chr4 81180307 81180361 -103108301 + (TATATG)n Simple_repeat Simple_repeat 5 57 0 554 79 0 0 chr4 81181219 81181295 -103107367 - L1PA2 LINE L1 -5 6150 6075 288 243 0 29 chr4 81181438 81181508 -103107154 + MER5B DNA MER1_type 109 176 -2 2483 105 19 35 chr4 81182380 81182750 -103105912 - THE1B LTR MaLR 0 364 1 517 238 172 20 chr4 81182948 81183099 -103105563 + MER5B DNA MER1_type 1 174 -4 1339 247 35 40 chr4 81183260 81183636 -103105026 - MLT1A2 LTR MaLR 0 374 1 21 0 0 0 chr4 81184079 81184100 -103104562 + AT_rich Low_complexity Low_complexity 1 21 0 260 317 0 12 chr4 81184639 81184721 -103103941 + L2 LINE L2 3231 3311 -2 696 284 79 41 chr4 81185103 81185444 -103103218 - MER57A LTR ERV1 0 403 50 32 26 0 0 chr4 81186772 81186811 -103101851 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr4 81188273 81188294 -103100368 + AT_rich Low_complexity Low_complexity 1 21 0 2230 109 11 35 chr4 81188790 81189137 -103099525 - L1MA3 LINE L1 0 6305 5967 3476 187 74 35 chr4 81189866 81191138 -103097524 - L1MB8 LINE L1 0 6178 4854 2283 90 0 43 chr4 81191149 81191471 -103097191 - AluY SINE Alu -3 308 1 612 209 108 27 chr4 81191474 81191622 -103097040 + MER58A DNA MER1_type 40 199 -25 21 0 0 0 chr4 81192110 81192131 -103096531 + AT_rich Low_complexity Low_complexity 1 21 0 328 339 17 8 chr4 81192324 81192442 -103096220 + MIR3 SINE MIR 64 182 -26 411 301 145 0 chr4 81192599 81192785 -103095877 + MIR SINE MIR 44 256 -6 714 251 117 17 chr4 81193623 81193854 -103094808 + MIR SINE MIR 6 259 -3 2406 85 0 16 chr4 81194086 81194404 -103094258 - AluSq SINE Alu 0 313 1 189 107 0 0 chr4 81196017 81196045 -103092617 + (CA)n Simple_repeat Simple_repeat 1 28 0 745 217 140 101 chr4 81196266 81196631 -103092031 - L1MC5 LINE L1 -430 7531 7137 2012 130 46 0 chr4 81196631 81196955 -103091707 - L1MB3 LINE L1 -8 6175 5837 745 217 140 101 chr4 81196955 81197124 -103091538 - L1MC5 LINE L1 -824 7137 6976 1053 234 41 78 chr4 81197179 81197725 -103090937 - L1MC4 LINE L1 -1000 6994 6484 3251 215 66 19 chr4 81198030 81198858 -103089804 + Charlie1a DNA MER1_type 2 868 -587 216 0 0 0 chr4 81199690 81199714 -103088948 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5223 96 8 7 chr4 81200079 81200812 -103087850 - L1PA10 LINE L1 0 6168 5435 1084 83 6 12 chr4 81200812 81200981 -103087681 + L1PA10 LINE L1 5275 5442 -726 297 319 60 0 chr4 81201256 81201372 -103087290 - L2 LINE L2 0 3272 3150 2013 158 22 8 chr4 81201566 81201926 -103086736 - MLT1A1 LTR MaLR 0 365 1 2010 135 3 0 chr4 81202148 81202437 -103086225 - AluSx SINE Alu -22 290 1 3488 99 14 4 chr4 81202451 81202965 -103085697 + L1PA13 LINE L1 5645 6163 0 1931 270 82 53 chr4 81203645 81204251 -103084411 + L1ME1 LINE L1 39 693 -5703 2118 130 11 14 chr4 81204251 81204605 -103084057 + L1MC2 LINE L1 5981 6333 -11 1931 270 82 53 chr4 81204605 81205098 -103083564 + L1ME1 LINE L1 693 1170 -5226 2096 268 51 37 chr4 81205108 81206178 -103082484 + L1ME1 LINE L1 1315 2399 -3997 3517 252 86 24 chr4 81206183 81209111 -103079551 + L1ME1 LINE L1 3028 6174 -61 286 164 55 0 chr4 81209117 81209172 -103079490 + L1MC/D LINE L1 5647 5704 -2104 270 357 63 8 chr4 81210252 81210378 -103078284 + MIR SINE MIR 8 140 -122 216 247 156 13 chr4 81210487 81210564 -103078098 - MER5A DNA MER1_type -75 114 27 354 293 187 0 chr4 81210578 81210701 -103077961 + MER5A DNA MER1_type 44 189 0 1162 221 79 28 chr4 81211015 81211305 -103077357 - L1M4 LINE L1 -6230 312 8 487 320 142 0 chr4 81211531 81211756 -103076906 + MIR SINE MIR 6 262 0 376 260 169 45 chr4 81213091 81213268 -103075394 + MIR SINE MIR 64 262 0 308 247 0 0 chr4 81213412 81213485 -103075177 - L2 LINE L2 0 3313 3241 * 396 252 49 8 chr4 81213483 81213606 -103075056 - L2 LINE L2 -470 2844 2717 1003 78 36 0 chr4 81214565 81214732 -103073930 + (TAGA)n Simple_repeat Simple_repeat 2 174 0 255 152 0 0 chr4 81214819 81214865 -103073797 + (TAGG)n Simple_repeat Simple_repeat 1 46 0 1784 169 6 13 chr4 81214961 81215275 -103073387 - AluSx SINE Alu 0 312 1 606 328 19 10 chr4 81215360 81215772 -103072890 - L1MEd LINE L1 -3465 2664 2249 403 304 19 41 chr4 81215787 81216057 -103072605 - L1MEd LINE L1 -4893 1226 963 347 357 35 7 chr4 81216249 81216392 -103072270 - L1MEd LINE L1 -5932 187 41 28 0 0 0 chr4 81218491 81218519 -103070143 + AT_rich Low_complexity Low_complexity 1 28 0 238 313 47 60 chr4 81219687 81219837 -103068825 + L2 LINE L2 2286 2433 -881 371 225 159 29 chr4 81219876 81220014 -103068648 + MIR SINE MIR 40 195 -67 2379 52 0 70 chr4 81220058 81220386 -103068276 + AluY SINE Alu 1 305 -6 222 37 0 0 chr4 81220410 81220437 -103068225 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1563 137 0 17 chr4 81220458 81220699 -103067963 - AluJb SINE Alu -38 274 38 243 191 43 0 chr4 81220741 81220788 -103067874 - Alu SINE Alu -133 169 121 229 339 55 28 chr4 81221063 81221281 -103067381 + L2 LINE L2 2868 3091 -181 217 350 107 5 chr4 81221364 81221561 -103067101 + MIR SINE MIR 13 229 -33 583 321 56 0 chr4 81222383 81222598 -103066064 + MIR SINE MIR 24 250 -12 4071 296 161 31 chr4 81223922 81225907 -103062755 + L2 LINE L2 25 2525 -788 2287 99 10 0 chr4 81225907 81226210 -103062452 - AluY SINE Alu -5 306 1 4071 296 161 31 chr4 81226210 81227118 -103061544 + L2 LINE L2 2525 3313 0 33 25 0 0 chr4 81227461 81227501 -103061161 + AT_rich Low_complexity Low_complexity 1 40 0 342 0 0 0 chr4 81231620 81231658 -103057004 + (TG)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chr4 81232316 81232339 -103056323 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 81233120 81233141 -103055521 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 81233252 81233276 -103055386 + AT_rich Low_complexity Low_complexity 1 24 0 261 128 0 0 chr4 81234442 81234489 -103054173 + (TG)n Simple_repeat Simple_repeat 2 48 0 354 186 19 195 chr4 81234886 81235032 -103053630 - MER5B DNA MER1_type -5 173 73 2397 83 0 0 chr4 81235032 81235332 -103053330 - AluSc SINE Alu -8 301 2 354 186 19 195 chr4 81235332 81235395 -103053267 - MER5B DNA MER1_type -105 73 1 180 343 65 19 chr4 81236928 81237036 -103051626 - L3b LINE CR1 -367 1216 1104 2820 181 37 14 chr4 81237236 81237826 -103050836 - L1MB8 LINE L1 0 6178 5575 6420 128 134 112 chr4 81237826 81239485 -103049177 - pTR5 LTR ERV1 0 2438 743 4274 176 34 34 chr4 81239485 81239812 -103048850 - L1MB8 LINE L1 -603 5581 5255 1545 184 29 32 chr4 81239812 81240121 -103048541 - AluJo SINE Alu -4 308 1 4274 176 34 34 chr4 81240121 81241056 -103047606 - L1MB8 LINE L1 -929 5255 4323 243 0 0 0 chr4 81241125 81241152 -103047510 + (TA)n Simple_repeat Simple_repeat 1 27 0 727 277 56 0 chr4 81242380 81242575 -103046087 - MER63A DNA MER1_type -3 207 2 23 33 0 0 chr4 81243289 81243319 -103045343 + AT_rich Low_complexity Low_complexity 1 30 0 836 243 24 5 chr4 81244158 81244364 -103044298 + MER63A DNA MER1_type 1 210 0 300 356 93 31 chr4 81244980 81245205 -103043457 - L2 LINE L2 -10 3262 3024 185 312 54 43 chr4 81246700 81246793 -103041869 + L2 LINE L2 3220 3313 0 38 22 0 0 chr4 81247600 81247645 -103041017 + AT_rich Low_complexity Low_complexity 1 45 0 1784 166 0 7 chr4 81247649 81247933 -103040729 - AluJo SINE Alu -30 282 1 216 406 103 0 chr4 81249071 81249226 -103039436 - L3b LINE CR1 -34 1549 1379 336 348 67 70 chr4 81251833 81252192 -103036470 - L2 LINE L2 0 3272 2915 291 54 0 0 chr4 81252198 81252235 -103036427 + (TGG)n Simple_repeat Simple_repeat 2 38 0 2482 85 0 0 chr4 81252389 81252696 -103035966 + AluSx SINE Alu 1 307 -5 327 361 120 49 chr4 81252779 81253413 -103035249 - L2 LINE L2 -644 2670 1992 205 298 107 12 chr4 81253489 81253573 -103035089 - MER5A DNA MER1_type -18 171 80 487 246 22 22 chr4 81254036 81254170 -103034492 - MER94 DNA DNA 0 134 1 2155 95 0 0 chr4 81254559 81254833 -103033829 + AluY SINE Alu 21 294 -17 465 324 0 14 chr4 81254966 81255105 -103033557 - MIR3 SINE MIR -5 203 67 2602 262 52 43 chr4 81256411 81257263 -103031399 + L1M3e LINE L1 460 1318 -6171 3535 263 58 39 chr4 81257325 81258481 -103030181 + L1M3e LINE L1 2008 3205 -4360 6838 60 19 11 chr4 81258481 81259801 -103028861 + L1PA8 LINE L1 4840 6167 -5 3535 263 58 39 chr4 81259801 81260249 -103028413 + L1M3e LINE L1 3205 3643 -3922 217 299 279 7 chr4 81261125 81261272 -103027390 - MIR SINE MIR -56 206 20 884 154 47 12 chr4 81261574 81261743 -103026919 - MER5B DNA MER1_type -3 175 1 217 200 0 0 chr4 81262095 81262135 -103026527 + MIR SINE MIR 66 105 -103 190 214 0 0 chr4 81262645 81262687 -103025975 - L2 LINE L2 0 3313 3272 182 373 138 14 chr4 81262991 81263208 -103025454 + L2 LINE L2 2811 3054 -218 648 13 0 0 chr4 81263323 81263399 -103025263 + L1P LINE L1 4401 4476 -1670 * 2954 66 0 0 chr4 81263395 81263772 -103024890 - L1P LINE L1 -1784 4362 3986 355 24 0 0 chr4 81263767 81263809 -103024853 - L1P LINE L1 -1883 4263 4222 * 579 284 57 0 chr4 81264101 81264295 -103024367 - L2 LINE L2 0 3313 3109 236 206 32 0 chr4 81264314 81264390 -103024272 + T-rich Low_complexity Low_complexity 1 130 0 994 282 29 0 chr4 81264524 81264804 -103023858 - L2 LINE L2 -214 3099 2812 277 291 165 39 chr4 81264809 81265039 -103023623 - MER112 DNA MER1_type -1 259 1 631 281 83 53 chr4 81265041 81265343 -103023319 - L2 LINE L2 -506 2808 2498 194 361 45 60 chr4 81265446 81265579 -103023083 - L2 LINE L2 -8 3264 3134 31 68 0 0 chr4 81266648 81266707 -103021955 + AT_rich Low_complexity Low_complexity 1 59 0 289 370 100 29 chr4 81267045 81267550 -103021112 + L2 LINE L2 2555 3100 -172 196 283 141 20 chr4 81269856 81269955 -103018707 + L2 LINE L2 3150 3260 -12 1782 157 33 0 chr4 81270010 81270284 -103018378 - AluSx SINE Alu -27 285 3 21 0 0 0 chr4 81273157 81273178 -103015484 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chr4 81274060 81274090 -103014572 + AT_rich Low_complexity Low_complexity 1 30 0 1769 112 86 4 chr4 81274232 81274542 -103014120 - AluSx SINE Alu 0 312 2 270 244 0 130 chr4 81274881 81275004 -103013658 + L2 LINE L2 3207 3313 0 272 241 142 100 chr4 81275623 81275884 -103012778 + LTR33A LTR ERVL 6 277 -246 288 260 52 0 chr4 81278423 81278500 -103010162 - MIR SINE MIR -133 129 49 1732 158 10 29 chr4 81282176 81282512 -103006150 - AluJo SINE Alu 0 312 1 1174 53 0 13 chr4 81282838 81282989 -103005673 - L1PA7 LINE L1 -4 6150 6002 2132 80 43 10 chr4 81283782 81284081 -103004581 + AluY SINE Alu 1 309 -2 23 0 0 0 chr4 81284310 81284333 -103004329 + AT_rich Low_complexity Low_complexity 1 23 0 1897 115 0 34 chr4 81284452 81284747 -103003915 - AluSc SINE Alu -24 285 1 695 152 7 14 chr4 81284841 81284979 -103003683 + L1MA5 LINE L1 6164 6300 0 21 0 0 0 chr4 81285652 81285673 -103002989 + AT_rich Low_complexity Low_complexity 1 21 0 42434 36 21 1 chr4 81287693 81293723 -102994939 - L1PA2 LINE L1 0 6155 2 422 326 7 0 chr4 81295145 81295283 -102993379 + MER117 DNA MER1_type 55 193 -4 194 274 57 66 chr4 81295296 81295402 -102993260 - MER5B DNA MER1_type -2 176 72 228 35 0 0 chr4 81295908 81295937 -102992725 + (CA)n Simple_repeat Simple_repeat 2 30 0 1913 138 3 32 chr4 81296011 81296322 -102992340 + AluSp SINE Alu 1 302 -11 281 296 0 0 chr4 81296688 81296759 -102991903 + MER69 DNA AcHobo 5 75 -2451 219 354 0 24 chr4 81296860 81296942 -102991720 - MIR3 SINE MIR -13 195 116 365 348 107 0 chr4 81296968 81297212 -102991450 + L3 LINE CR1 965 1234 -343 398 299 26 8 chr4 81297301 81297418 -102991244 + L2 LINE L2 3195 3313 0 381 299 75 26 chr4 81297452 81297797 -102990865 + L1ME3A LINE L1 1266 1627 -4769 405 300 109 44 chr4 81298115 81298592 -102990070 + L1ME3A LINE L1 4596 5103 -1112 534 287 84 51 chr4 81298683 81299387 -102989275 + L1ME3A LINE L1 5240 5982 -265 315 283 39 88 chr4 81299481 81299686 -102988976 + L1ME3A LINE L1 6037 6231 -8 2482 170 38 20 chr4 81299809 81300309 -102988353 + LTR22 LTR ERVK 1 509 0 6268 174 44 16 chr4 81300440 81301591 -102987071 + L1MA1 LINE L1 15 1197 -6368 * 6447 137 28 4 chr4 81301587 81303481 -102985181 + L1MA1 LINE L1 5586 7555 -18 2529 90 11 0 chr4 81303494 81303859 -102984803 + L1MA2 LINE L1 5936 6304 0 1263 183 14 45 chr4 81305475 81305788 -102982874 - AluJo SINE Alu 0 306 3 247 361 21 10 chr4 81308179 81308276 -102980386 - L3 LINE CR1 -29 1548 1451 * 532 297 36 26 chr4 81308274 81308469 -102980193 + MIR SINE MIR 61 257 -5 28 0 0 0 chr4 81308486 81308514 -102980148 + AT_rich Low_complexity Low_complexity 1 28 0 33 25 0 0 chr4 81308539 81308579 -102980083 + AT_rich Low_complexity Low_complexity 1 40 0 251 299 94 0 chr4 81308594 81308711 -102979951 - L3 LINE CR1 -121 1456 1329 252 0 0 0 chr4 81308840 81308868 -102979794 + (T)n Simple_repeat Simple_repeat 1 28 0 183 80 0 0 chr4 81308889 81308914 -102979748 + (CAA)n Simple_repeat Simple_repeat 2 26 0 2149 119 0 0 chr4 81308980 81309274 -102979388 - AluSc SINE Alu -15 294 1 22 0 0 0 chr4 81309370 81309392 -102979270 + AT_rich Low_complexity Low_complexity 1 22 0 29 47 0 0 chr4 81310716 81310759 -102977903 + AT_rich Low_complexity Low_complexity 1 43 0 38 0 0 0 chr4 81311169 81311207 -102977455 + AT_rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr4 81313411 81313436 -102975226 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr4 81313611 81313639 -102975023 + AT_rich Low_complexity Low_complexity 1 28 0 1010 176 128 34 chr4 81314264 81314560 -102974102 - MER33 DNA MER1_type 0 324 1 1084 195 42 9 chr4 81315529 81315744 -102972918 - MLT1A1 LTR MaLR 0 365 144 6521 47 5 2 chr4 81315746 81316563 -102972099 - L1PA7 LINE L1 -1 6153 5338 1030 109 18 0 chr4 81316644 81316809 -102971853 - L1PA7 LINE L1 -784 5362 5195 10194 146 13 25 chr4 81366809 81368652 -102920010 - L1PA7 LINE L1 -2533 3613 1794 411 250 198 0 chr4 81369345 81369461 -102919201 - MER5A DNA MER1_type 0 189 51 255 187 121 42 chr4 81369884 81369960 -102918702 + MIR SINE MIR 33 114 -94 266 375 0 25 chr4 81370512 81370632 -102918030 - MIR SINE MIR -126 136 20 276 204 0 19 chr4 81370730 81370784 -102917878 - L2 LINE L2 0 3313 3261 1611 170 3 74 chr4 81371134 81371457 -102917205 - AluJo SINE Alu -12 300 1 360 320 77 0 chr4 81372029 81372185 -102916477 + MIR SINE MIR 77 244 -18 228 149 0 0 chr4 81372190 81372237 -102916425 + (TTA)n Simple_repeat Simple_repeat 2 48 0 8080 110 13 11 chr4 81372560 81373828 -102914834 + L1PA10 LINE L1 3064 4333 -1813 26402 42 1 7 chr4 81373828 81377103 -102911559 + L1PA3 LINE L1 3 3260 -2886 7620 26 5 0 chr4 81377113 81378491 -102910171 + L1PA3 LINE L1 4771 6152 -3 189 0 0 0 chr4 81378508 81378529 -102910133 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 6604 127 42 0 chr4 81378548 81380372 -102908290 + L1PA10 LINE L1 4316 6163 -5 303 289 102 8 chr4 81380442 81380570 -102908092 + MLT1J2 LTR MaLR 288 427 -23 252 241 264 0 chr4 81380577 81380664 -102907998 - L2 LINE L2 -5 3308 3199 27 0 0 0 chr4 81380873 81380900 -102907762 + AT_rich Low_complexity Low_complexity 1 27 0 2652 118 34 7 chr4 81381141 81381558 -102907104 + MSTA LTR MaLR 1 428 0 21 0 0 0 chr4 81383644 81383665 -102904997 + AT_rich Low_complexity Low_complexity 1 21 0 7005 137 25 20 chr4 81384300 81384678 -102903984 + L1MA5A LINE L1 3996 4371 -1926 2117 144 7 0 chr4 81384678 81384984 -102903678 + AluY SINE Alu 2 309 -2 7005 137 25 20 chr4 81384984 81386887 -102901775 + L1MA5A LINE L1 4371 6287 -10 184 371 32 0 chr4 81388168 81388230 -102900432 + MIR SINE MIR 27 90 -118 7585 32 0 0 chr4 81388895 81390033 -102898629 - L1PA4 LINE L1 0 6155 5018 230 311 0 14 chr4 81390084 81390158 -102898504 - MIR SINE MIR -152 110 38 1781 286 79 42 chr4 81390225 81390261 -102898401 - L2 LINE L2 0 3313 3280 2238 154 78 2 chr4 81390261 81390657 -102898005 + MSTB LTR MaLR 1 426 0 1781 286 79 42 chr4 81390657 81390718 -102897944 - L2 LINE L2 -33 3280 3223 808 226 33 42 chr4 81390718 81390930 -102897732 + MER63A DNA MER1_type 1 210 0 1781 286 79 42 chr4 81390930 81391820 -102896842 - L2 LINE L2 -90 3223 2163 1000 220 13 31 chr4 81391836 81392063 -102896599 - MIR SINE MIR -12 250 28 236 289 13 13 chr4 81392068 81392144 -102896518 - L2 LINE L2 -1157 2157 2082 287 263 61 20 chr4 81392457 81392556 -102896106 + MER94 DNA DNA 1 103 -31 1071 111 163 0 chr4 81392871 81393061 -102895601 - Tigger7 DNA MER2_type 0 2491 2271 * 1641 187 67 3 chr4 81393035 81393334 -102895328 - Tigger7 DNA MER2_type -415 318 1 12022 98 9 8 chr4 81393539 81396039 -102892623 - L1PA7 LINE L1 -14 6455 3932 12440 129 25 39 chr4 81396142 81399300 -102889362 - L1PA7 LINE L1 -3301 3160 5 26 0 0 0 chr4 81399881 81399907 -102888755 + AT_rich Low_complexity Low_complexity 1 26 0 464 261 50 45 chr4 81400408 81400607 -102888055 + L1ME LINE L1 3 202 -5917 8437 83 10 4 chr4 81400671 81402612 -102886050 - L1PA7 LINE L1 -6 6148 4194 567 336 84 33 chr4 81402941 81403168 -102885494 + L1ME LINE L1 4716 4930 -1199 2024 217 78 14 chr4 81403168 81403656 -102885006 + LTR40a LTR ERVL 1 519 0 567 336 84 33 chr4 81403656 81403799 -102884863 + L1ME LINE L1 4930 5064 -1065 34 24 0 0 chr4 81403799 81403840 -102884822 + AT_rich Low_complexity Low_complexity 1 41 0 567 336 84 33 chr4 81403840 81403913 -102884749 + L1ME LINE L1 5064 5225 -904 600 279 113 57 chr4 81403928 81404458 -102884204 + L1ME LINE L1 5241 5800 -345 1938 249 93 47 chr4 81405282 81405811 -102882851 - L1ME2 LINE L1 -9 6224 5721 3135 156 18 7 chr4 81405811 81406364 -102882298 - L1MA4 LINE L1 -6 6294 5736 1938 249 93 47 chr4 81406364 81406898 -102881764 - L1ME2 LINE L1 -512 5721 5099 947 234 53 11 chr4 81406904 81407186 -102881476 - L1ME2 LINE L1 -4305 2091 1798 325 331 38 15 chr4 81407463 81407596 -102881066 + L2 LINE L2 3136 3271 -1 446 266 11 0 chr4 81408536 81408630 -102880032 + MER58B DNA MER1_type 247 341 0 357 305 55 30 chr4 81409633 81409869 -102878793 + L1M4 LINE L1 2311 2552 -3594 477 282 107 43 chr4 81409887 81410496 -102878166 + L1M4 LINE L1 3581 4228 -1918 9710 31 0 0 chr4 81410506 81412437 -102876225 - L1PA3 LINE L1 -3 6152 4222 6936 36 1 0 chr4 81412438 81413272 -102875390 + L1PA3 LINE L1 3379 4213 -1933 833 113 0 32 chr4 81413800 81413924 -102874738 + L1ME LINE L1 37 156 -6228 * 4218 194 8 5 chr4 81413921 81414913 -102873749 + L1ME LINE L1 656 5559 -823 872 124 97 11 chr4 81414923 81415108 -102873554 + L1MA3 LINE L1 6105 6305 0 10268 209 53 27 chr4 81415127 81416724 -102871938 + L1MB4 LINE L1 789 2342 -4040 1643 162 4 15 chr4 81416724 81416995 -102871667 + AluJo SINE Alu 31 298 -14 10268 209 53 27 chr4 81416995 81420016 -102868646 + L1MB4 LINE L1 2342 5531 -851 2214 89 0 10 chr4 81420038 81420331 -102868331 + AluSc SINE Alu 1 290 -19 1866 163 0 71 chr4 81420346 81420727 -102867935 + L1MB4 LINE L1 5676 6029 -390 254 28 0 28 chr4 81420741 81420777 -102867885 + (TA)n Simple_repeat Simple_repeat 1 35 0 357 100 33 0 chr4 81420783 81420843 -102867819 + L1MB4 LINE L1 6018 6079 -340 551 149 37 9 chr4 81420846 81420953 -102867709 + L1MB4 LINE L1 6307 6416 0 332 242 37 56 chr4 81420988 81421149 -102867513 + L1ME LINE L1 5861 6018 -339 22 56 0 0 chr4 81421797 81421833 -102866829 + AT_rich Low_complexity Low_complexity 1 36 0 1725 82 165 0 chr4 81422664 81422919 -102865743 - AluY SINE Alu -14 297 1 201 39 0 0 chr4 81423627 81423653 -102865009 + (GA)n Simple_repeat Simple_repeat 1 26 0 183 42 0 0 chr4 81424793 81424817 -102863845 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1957 141 2 155 chr4 81425883 81425932 -102862730 + MSTB LTR MaLR 1 56 -370 1543 162 50 30 chr4 81425932 81426114 -102862548 - AluJb SINE Alu -8 304 112 243 0 0 0 chr4 81426114 81426141 -102862521 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1543 162 50 30 chr4 81426141 81426255 -102862407 - AluJb SINE Alu -200 112 2 1957 141 2 155 chr4 81426255 81426708 -102861954 + MSTB LTR MaLR 56 426 0 597 283 73 52 chr4 81426745 81427031 -102861631 + LTR16A LTR ERVL 25 316 -134 1747 232 61 65 chr4 81427221 81428110 -102860552 + HERVL74 LTR ERVL 1870 2818 -738 1842 158 25 30 chr4 81428110 81428471 -102860191 + LTR52 LTR ERVL 53 411 -10 353 372 86 53 chr4 81428615 81428975 -102859687 - L2 LINE L2 -5 3267 2896 196 365 42 0 chr4 81428984 81429080 -102859582 - L2 LINE L2 -558 2756 2657 2399 207 53 17 chr4 81429562 81430104 -102858558 + MER68 LTR ERV1 1 562 0 242 282 0 0 chr4 81430346 81430417 -102858245 + (CATATA)n Simple_repeat Simple_repeat 2 72 0 2467 74 0 0 chr4 81431664 81431974 -102856688 + AluY SINE Alu 1 310 -1 2066 213 38 40 chr4 81432319 81432846 -102855816 - MER74A LTR ERVL -12 546 21 254 345 54 113 chr4 81432869 81433257 -102855405 + L2 LINE L2 2907 3271 -1 1733 179 0 17 chr4 81434232 81434528 -102854134 + AluJb SINE Alu 1 291 -21 23 0 0 0 chr4 81434899 81434922 -102853740 + AT_rich Low_complexity Low_complexity 1 23 0 550 181 0 0 chr4 81435705 81435810 -102852852 - MER53 DNA DNA -83 106 2 2367 85 0 28 chr4 81435832 81436150 -102852512 + AluSc SINE Alu 1 309 0 533 208 57 0 chr4 81436239 81436345 -102852317 - MER45A DNA AcHobo -1 177 66 1032 222 28 5 chr4 81436467 81436683 -102851979 - MER58A DNA MER1_type 0 224 4 2451 71 0 0 chr4 81436834 81437131 -102851531 - AluY SINE Alu -14 297 1 209 236 227 27 chr4 81437472 81437582 -102851080 - MIR SINE MIR -44 218 87 26 64 0 0 chr4 81439482 81439529 -102849133 + AT_rich Low_complexity Low_complexity 1 47 0 201 268 0 0 chr4 81439629 81439670 -102848992 - MIR SINE MIR -58 150 110 737 204 6 31 chr4 81439816 81439978 -102848684 + L1ME3A LINE L1 6003 6160 -10 232 316 94 91 chr4 81440054 81440289 -102848373 - L2 LINE L2 -20 3252 3014 2477 171 15 59 chr4 81440289 81440817 -102847845 - MLT1D LTR MaLR 0 505 1 232 316 94 91 chr4 81440817 81440888 -102847774 - L2 LINE L2 -258 3014 2945 190 325 146 41 chr4 81440985 81441253 -102847409 - L2 LINE L2 -561 2753 2458 26216 133 19 21 chr4 81441318 81447702 -102840960 - L1PA8A LINE L1 -6 6440 4 766 251 62 81 chr4 81447798 81448354 -102840308 + L2 LINE L2 2666 3210 -103 225 269 75 43 chr4 81448358 81448451 -102840211 + L2 LINE L2 2677 2772 -542 221 179 0 0 chr4 81448458 81448497 -102840165 + L2 LINE L2 3269 3307 -6 21 36 0 0 chr4 81448883 81448911 -102839751 + AT_rich Low_complexity Low_complexity 1 28 0 1661 180 0 68 chr4 81449769 81450091 -102838571 - AluJb SINE Alu -12 300 1 364 291 55 9 chr4 81450218 81450328 -102838334 + MIR3 SINE MIR 55 169 -39 2216 93 0 0 chr4 81450607 81450920 -102837742 + AluY SINE Alu 1 313 0 619 286 124 0 chr4 81451041 81451258 -102837404 - MIR SINE MIR -5 257 14 426 258 90 12 chr4 81451914 81452081 -102836581 - L2 LINE L2 0 3313 3134 213 128 26 0 chr4 81452095 81452134 -102836528 + (TG)n Simple_repeat Simple_repeat 1 40 0 210 382 63 26 chr4 81452145 81452336 -102836326 - L2 LINE L2 -188 3084 2887 198 300 100 0 chr4 81452895 81452955 -102835707 - L2 LINE L2 -3 3269 3204 186 133 0 0 chr4 81453609 81453639 -102835023 + (CA)n Simple_repeat Simple_repeat 2 31 0 231 274 111 17 chr4 81453642 81453759 -102834903 - MLT1L LTR MaLR -13 602 475 326 328 111 18 chr4 81453797 81453968 -102834694 - MLT1L LTR MaLR -221 394 208 203 282 28 0 chr4 81454814 81454885 -102833777 - L3b LINE CR1 -86 1497 1425 310 57 38 0 chr4 81455603 81455656 -102833006 + (TTTTA)n Simple_repeat Simple_repeat 1 55 0 24325 22 2 0 chr4 81455656 81459295 -102829367 - L1PA2 LINE L1 -24 6131 2489 235 364 93 0 chr4 81460167 81460307 -102828355 + L2 LINE L2 3161 3313 0 2120 36 7 43 chr4 81461070 81461346 -102827316 - AluY SINE Alu -2 309 44 564 263 42 38 chr4 81463101 81463314 -102825348 + L2 LINE L2 2991 3204 -109 737 310 61 12 chr4 81463386 81463712 -102824950 + L2 LINE L2 2010 2351 -963 208 265 0 0 chr4 81463715 81463764 -102824898 + L2 LINE L2 763 811 -2503 565 257 142 16 chr4 81464389 81464572 -102824090 - MIR SINE MIR -35 227 22 195 100 0 0 chr4 81465157 81465187 -102823475 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 358 333 65 0 chr4 81465187 81465295 -102823367 - L2 LINE L2 -13 3259 3145 1515 218 104 13 chr4 81466401 81466766 -102821896 + MSTD LTR MaLR 1 394 -2 183 170 0 0 chr4 81466971 81467018 -102821644 + (TGAA)n Simple_repeat Simple_repeat 1 47 0 997 299 94 16 chr4 81467158 81467593 -102821069 + LTR33 LTR ERVL 1 469 -52 322 288 133 35 chr4 81467956 81468182 -102820480 + MIR SINE MIR 8 255 -7 1876 114 4 0 chr4 81469228 81469490 -102819172 - AluSc SINE Alu -8 301 39 2076 127 21 0 chr4 81469572 81469863 -102818799 + AluSx SINE Alu 1 297 -15 615 219 99 36 chr4 81470611 81470803 -102817859 + MIR SINE MIR 32 235 -27 200 229 0 16 chr4 81471157 81471218 -102817444 + (TATAA)n Simple_repeat Simple_repeat 4 63 0 1209 292 53 14 chr4 81471817 81472382 -102816280 + L2 LINE L2 2727 3304 -9 986 339 83 14 chr4 81472463 81473180 -102815482 + L2 LINE L2 2375 3169 -144 198 103 0 0 chr4 81473180 81473209 -102815453 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 986 339 83 14 chr4 81473209 81473330 -102815332 + L2 LINE L2 3169 3280 -33 27 62 0 0 chr4 81474365 81474413 -102814249 + AT_rich Low_complexity Low_complexity 1 48 0 3505 207 42 16 chr4 81474866 81475721 -102812941 - L1ME2 LINE L1 0 6164 5288 2445 103 0 22 chr4 81475784 81475906 -102812756 - L1PA16 LINE L1 -6 6160 6037 2501 97 11 29 chr4 81475906 81476288 -102812374 - THE1C LTR MaLR 0 375 1 2445 103 0 22 chr4 81476288 81476534 -102812128 - L1PA16 LINE L1 -129 6037 5800 727 271 59 7 chr4 81476545 81476880 -102811782 - L1ME2 LINE L1 -869 5277 4922 445 107 0 60 chr4 81479931 81480015 -102808647 + MADE1 DNA Mariner 1 79 -1 191 340 0 0 chr4 81480099 81480146 -102808516 + L2 LINE L2 3007 3053 -219 471 213 38 69 chr4 81481122 81481282 -102807380 - MIR SINE MIR -103 159 5 227 265 0 0 chr4 81481421 81481470 -102807192 - MER63 DNA MER1_type 0 1688 1640 679 121 0 0 chr4 81481476 81481575 -102807087 - AluSc SINE Alu -17 292 194 24 67 0 0 chr4 81481736 81481781 -102806881 + AT_rich Low_complexity Low_complexity 1 45 0 25 51 0 0 chr4 81482959 81482998 -102805664 + AT_rich Low_complexity Low_complexity 1 39 0 1877 229 81 10 chr4 81483006 81483500 -102805162 + L1MD3 LINE L1 7449 7977 -18 677 248 56 30 chr4 81483676 81483905 -102804757 + MIR SINE MIR 11 240 -22 262 271 78 31 chr4 81484188 81484271 -102804391 + LTR67 LTR ERVL 406 499 -58 5870 103 18 6 chr4 81484271 81485452 -102803210 + L1PA16 LINE L1 4964 6165 -1 262 271 78 31 chr4 81485452 81485497 -102803165 + LTR67 LTR ERVL 499 540 -17 1753 140 29 11 chr4 81485563 81485842 -102802820 + AluSx SINE Alu 3 286 -26 359 0 43 0 chr4 81485845 81485891 -102802771 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 911 252 83 51 chr4 81486895 81487268 -102801394 + MER67C LTR ERV1 1 385 -325 978 187 14 19 chr4 81487268 81487482 -102801180 + MER67C LTR ERV1 497 709 -1 367 235 118 0 chr4 81488287 81488389 -102800273 - MER103 DNA DNA -49 117 4 986 239 21 33 chr4 81488420 81488663 -102799999 - MIR SINE MIR 0 262 23 423 271 62 14 chr4 81488879 81489023 -102799639 + MIR SINE MIR 111 261 -1 2260 93 3 0 chr4 81489562 81489853 -102798809 - AluSg SINE Alu -18 292 1 2792 169 59 2 chr4 81489993 81490484 -102798178 - MLT2B1 LTR ERVL -1 519 1 1192 178 18 76 chr4 81490768 81491043 -102797619 - MIR SINE MIR 0 262 4 355 302 113 6 chr4 81492344 81492503 -102796159 + MIR3 SINE MIR 2 177 -31 1525 34 0 0 chr4 81492515 81492693 -102795969 - L1PA3 LINE L1 -3 6152 5975 809 272 154 30 chr4 81493176 81493805 -102794857 - L2 LINE L2 -2 3311 2623 319 169 61 47 chr4 81493895 81494043 -102794619 + (TTATA)n Simple_repeat Simple_repeat 5 154 0 1370 292 146 11 chr4 81494073 81494682 -102793980 - L2 LINE L2 -711 2603 1913 810 322 21 45 chr4 81494682 81495061 -102793601 + L2 LINE L2 2944 3313 0 184 454 31 8 chr4 81495265 81495395 -102793267 - L2 LINE L2 -38 3234 3102 299 282 175 0 chr4 81495521 81495624 -102793038 - L2 LINE L2 -2 3311 3191 1574 175 17 17 chr4 81496788 81497080 -102791582 + AluJo SINE Alu 15 306 -6 1201 277 60 40 chr4 81497789 81497882 -102790780 + LTR16C LTR ERVL 1 91 -400 2496 147 31 0 chr4 81497882 81498296 -102790366 - MSTA LTR MaLR 0 428 2 1201 277 60 40 chr4 81498296 81498682 -102789980 + LTR16C LTR ERVL 91 490 -1 1123 316 63 18 chr4 81498810 81499415 -102789247 + L1MEc LINE L1 37 668 -5728 1099 254 42 28 chr4 81499575 81499929 -102788733 + L2 LINE L2 2951 3309 -4 318 114 38 0 chr4 81500043 81500122 -102788540 + (TA)n Simple_repeat Simple_repeat 2 83 0 2338 111 0 0 chr4 81500232 81500539 -102788123 + AluSx SINE Alu 1 307 -5 838 189 50 0 chr4 81501289 81501469 -102787193 - MER5A DNA MER1_type 0 189 1 2183 107 0 10 chr4 81501639 81501949 -102786713 - AluSg SINE Alu -3 307 1 371 358 77 40 chr4 81502069 81502396 -102786266 + L2 LINE L2 2636 2974 -340 300 155 345 0 chr4 81502900 81502984 -102785678 + L2 LINE L2 3179 3291 -22 194 167 111 0 chr4 81502954 81502990 -102785672 + MIR SINE MIR 217 256 -6 * 1542 200 67 9 chr4 81503637 81503982 -102784680 + MLT1A1 LTR MaLR 1 365 0 2226 125 0 0 chr4 81504219 81504531 -102784131 - AluSx SINE Alu 0 312 1 784 161 63 107 chr4 81505363 81505568 -102783094 - MER20 DNA MER1_type -20 199 4 480 272 88 8 chr4 81505972 81506097 -102782565 - L2 LINE L2 -1 3312 3178 22 0 0 0 chr4 81507146 81507168 -102781494 + AT_rich Low_complexity Low_complexity 1 22 0 264 332 26 123 chr4 81507689 81507999 -102780663 - L2 LINE L2 -1 3271 2992 453 134 0 0 chr4 81508030 81508112 -102780550 - LTR37B LTR ERV1 -4 464 383 301 224 15 0 chr4 81508158 81508225 -102780437 - LTR37A LTR ERV1 -248 178 111 2624 45 0 0 chr4 81508722 81509030 -102779632 - AluY SINE Alu -3 308 1 263 218 77 0 chr4 81509318 81509396 -102779266 + L1ME LINE L1 5413 5496 -668 2221 113 0 0 chr4 81509875 81510176 -102778486 + AluSq SINE Alu 1 301 -12 1686 221 125 0 chr4 81510359 81510824 -102777838 - Charlie1b DNA MER1_type 0 523 1 298 247 13 13 chr4 81513271 81513348 -102775314 + MIR SINE MIR 185 261 -1 702 297 43 4 chr4 81513926 81514158 -102774504 + MIR SINE MIR 10 250 -12 565 79 101 0 chr4 81514245 81514334 -102774328 + MER4A LTR ERV1 1 98 -566 1664 129 167 78 chr4 81514334 81514705 -102773957 + MER4A LTR ERV1 261 664 0 315 71 0 0 chr4 81515375 81515417 -102773245 + (CA)n Simple_repeat Simple_repeat 2 43 0 669 323 91 12 chr4 81516441 81516760 -102771902 - L3 LINE CR1 -19 1558 1215 294 265 0 0 chr4 81517338 81517455 -102771207 + (TA)n Simple_repeat Simple_repeat 1 117 0 2520 245 87 29 chr4 81517462 81518603 -102770059 + L1ME3 LINE L1 4849 6076 -86 2311 124 9 6 chr4 81518603 81518951 -102769711 + THE1A LTR MaLR 3 351 -4 2520 245 87 29 chr4 81518951 81519023 -102769639 + L1ME3 LINE L1 6076 6142 -20 234 267 192 0 chr4 81519161 81519333 -102769329 - L1ME LINE L1 -192 5929 5725 2967 75 26 22 chr4 81519440 81519894 -102768768 + L1MA2 LINE L1 5849 6304 0 266 279 0 0 chr4 81521067 81521128 -102767534 - Charlie8 DNA MER1_type 0 2417 2357 278 250 151 33 chr4 81521176 81521328 -102767334 - Charlie8 DNA MER1_type -2210 207 38 194 314 0 0 chr4 81521369 81521420 -102767242 - MIR SINE MIR -89 119 69 1750 201 49 34 chr4 81522107 81522554 -102766108 - MLT1C LTR MaLR -2 465 12 21 0 0 0 chr4 81523108 81523129 -102765533 + AT_rich Low_complexity Low_complexity 1 21 0 429 287 78 18 chr4 81523129 81523296 -102765366 + MIR3 SINE MIR 11 187 -21 208 163 0 41 chr4 81524226 81524275 -102764387 + CT-rich Low_complexity Low_complexity 4 50 0 478 260 69 46 chr4 81524402 81524575 -102764087 + MIR3 SINE MIR 23 199 -9 2951 25 3 0 chr4 81524854 81525217 -102763445 - L1PA3 LINE L1 -850 5296 4933 7422 22 2 1 chr4 81525217 81526087 -102762575 + L1PA3 LINE L1 5284 6155 0 696 194 0 30 chr4 81526203 81526337 -102762325 - FLAM_C SINE Alu -3 130 1 1945 115 3 28 chr4 81527249 81527537 -102761125 + AluSx SINE Alu 17 297 -15 217 338 8 4 chr4 81527746 81527900 -102760762 - MIR SINE MIR -32 230 29 2075 116 3 29 chr4 81528465 81528776 -102759886 + AluSp SINE Alu 1 303 -10 687 270 143 9 chr4 81529588 81529818 -102758844 - MIR SINE MIR 0 262 2 286 313 135 80 chr4 81530203 81530567 -102758095 - L2 LINE L2 0 3272 2889 245 322 121 55 chr4 81530646 81530845 -102757817 - L2 LINE L2 -559 2755 2544 1676 155 4 18 chr4 81531338 81531615 -102757047 - AluJo SINE Alu -39 273 1 1921 117 3 34 chr4 81532003 81532294 -102756368 + AluSx SINE Alu 6 287 -25 1149 187 126 83 chr4 81532342 81532479 -102756183 + MLT1A1 LTR MaLR 3 133 -232 6485 81 5 2 chr4 81532479 81533369 -102755293 + L1PA8 LINE L1 5278 6169 -3 1149 187 126 83 chr4 81533369 81533579 -102755083 + MLT1A1 LTR MaLR 133 365 0 23 0 0 0 chr4 81533724 81533747 -102754915 + AT_rich Low_complexity Low_complexity 1 23 0 2556 107 13 8 chr4 81534750 81535123 -102753539 + THE1C LTR MaLR 1 375 0 26 50 0 0 chr4 81535186 81535226 -102753436 + AT_rich Low_complexity Low_complexity 1 40 0 233 216 78 0 chr4 81535311 81535362 -102753300 + L2 LINE L2 3257 3311 -2 225 0 0 0 chr4 81586511 81586536 -102702126 + (T)n Simple_repeat Simple_repeat 1 25 0 197 204 155 39 chr4 81586919 81587022 -102701640 - MIR SINE MIR -48 214 100 292 154 29 115 chr4 81587362 81587419 -102701243 + L1MB2 LINE L1 6075 6121 -50 2239 109 0 0 chr4 81587419 81587713 -102700949 + AluSq SINE Alu 1 294 -19 292 154 29 115 chr4 81587713 81587759 -102700903 + L1MB2 LINE L1 6121 6169 -2 438 263 45 15 chr4 81588715 81588913 -102699749 - L1M4 LINE L1 -1744 4402 4199 447 251 80 31 chr4 81588971 81589134 -102699528 - L1M4 LINE L1 -1949 4197 4027 2450 66 0 7 chr4 81589135 81589436 -102699226 + AluY SINE Alu 1 299 -12 198 0 0 0 chr4 81589549 81589571 -102699091 + (TG)n Simple_repeat Simple_repeat 2 23 0 341 186 54 101 chr4 81589586 81589634 -102699028 + L1MC4 LINE L1 7919 7968 -74 2342 86 0 10 chr4 81589634 81589937 -102698725 + AluY SINE Alu 1 300 -11 341 186 54 101 chr4 81589937 81590017 -102698645 + L1MC4 LINE L1 7968 8041 -1 205 250 78 0 chr4 81590111 81590175 -102698487 - MIR SINE MIR -83 179 111 201 94 0 0 chr4 81590197 81590229 -102698433 + (GGAGA)n Simple_repeat Simple_repeat 3 34 0 669 249 165 79 chr4 81591044 81591486 -102697176 + MLT1H LTR MaLR 67 546 -3 270 314 12 12 chr4 81592764 81592850 -102695812 + MER91A DNA MER1_type 33 118 -78 231 263 18 18 chr4 81592940 81592997 -102695665 + MER91A DNA MER1_type 131 187 -3 291 265 59 0 chr4 81593097 81593165 -102695497 - L2 LINE L2 -32 3240 3169 1661 212 24 19 chr4 81594087 81594459 -102694203 - MLT1A2 LTR MaLR 0 374 1 2414 57 0 7 chr4 81594538 81594837 -102693825 + AluY SINE Alu 1 297 -14 662 184 37 0 chr4 81594875 81595009 -102693653 + MER33 DNA MER1_type 10 148 -176 1709 174 165 0 chr4 81595009 81595354 -102693308 - MSTA LTR MaLR 0 428 27 570 145 116 70 chr4 81595366 81595538 -102693124 + MER33 DNA MER1_type 144 323 -1 234 0 0 0 chr4 81596339 81596365 -102692297 + (A)n Simple_repeat Simple_repeat 1 26 0 470 302 0 27 chr4 81596661 81596810 -102691852 - LTR16B LTR ERVL -318 146 2 1682 131 59 87 chr4 81597018 81597057 -102691605 - THE1C LTR MaLR 0 428 389 1899 133 7 28 chr4 81597057 81597343 -102691319 + AluSx SINE Alu 1 280 -32 1682 131 59 87 chr4 81597343 81597723 -102690939 - THE1C LTR MaLR -39 389 1 240 35 0 0 chr4 81597950 81597979 -102690683 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 568 319 31 26 chr4 81598006 81598232 -102690430 - MIR SINE MIR -15 247 21 5722 132 32 2 chr4 81598329 81599296 -102689366 - L1PA16 LINE L1 -9 6157 5149 289 259 12 25 chr4 81599362 81599443 -102689219 - L2 LINE L2 -5 3267 3188 378 61 0 0 chr4 81600138 81600187 -102688475 + (TC)n Simple_repeat Simple_repeat 1 49 0 21 36 0 0 chr4 81600594 81600622 -102688040 + AT_rich Low_complexity Low_complexity 1 28 0 898 329 20 31 chr4 81601682 81602035 -102686627 + MLT1K LTR MaLR 136 484 -104 483 288 78 0 chr4 81603142 81603295 -102685367 + MIR SINE MIR 90 254 -8 2496 63 3 3 chr4 81603384 81603687 -102684975 + AluY SINE Alu 1 303 -8 208 304 72 0 chr4 81603909 81603978 -102684684 + L2 LINE L2 3184 3257 -15 1129 117 62 64 chr4 81604356 81604549 -102684113 - LTR54 LTR ERV1 0 510 268 1771 151 0 66 chr4 81604549 81604867 -102683795 - AluJb SINE Alu -15 297 1 1129 117 62 64 chr4 81604867 81604956 -102683706 - LTR54 LTR ERV1 -242 268 180 360 64 0 0 chr4 81604962 81605009 -102683653 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 239 284 45 0 chr4 81605685 81605773 -102682889 + MIR SINE MIR 127 218 -44 1783 158 3 30 chr4 81605930 81606234 -102682428 + AluJo SINE Alu 1 296 -16 591 360 101 29 chr4 81606812 81607453 -102681209 - L2 LINE L2 -9 3263 2590 253 235 24 0 chr4 81607454 81607539 -102681123 + GA-rich Low_complexity Low_complexity 2 88 0 432 232 163 14 chr4 81607564 81607772 -102680890 + L1MC/D LINE L1 5199 5435 -749 3966 156 13 14 chr4 81607989 81608663 -102679999 - MER72 LTR ERV1 -26 696 22 1836 155 0 26 chr4 81608663 81608988 -102679674 - AluSx SINE Alu 0 312 1 3966 156 13 14 chr4 81608988 81609010 -102679652 - MER72 LTR ERV1 -700 22 1 347 225 14 0 chr4 81609010 81609081 -102679581 - LTR16A LTR ERVL -5 445 374 390 355 64 0 chr4 81609108 81609350 -102679312 + HERV16 LTR ERVL 1357 1723 -3418 351 184 11 35 chr4 81609391 81609478 -102679184 + HERV16 LTR ERVL 4814 4898 -98 558 232 29 121 chr4 81609638 81609910 -102678752 + LTR16A1 LTR ERVL 91 337 -120 899 122 0 43 chr4 81609973 81610112 -102678550 - FLAM_C SINE Alu 0 133 1 435 238 32 105 chr4 81610219 81610496 -102678166 - MER112 DNA MER1_type 0 260 4 3386 153 9 3 chr4 81610521 81611422 -102677240 + L1MA4 LINE L1 4861 5865 -435 3617 106 2 6 chr4 81611925 81612435 -102676227 + MER9 LTR ERVK 1 508 -3 2006 124 50 3 chr4 81612467 81612766 -102675896 + AluSq SINE Alu 1 313 0 405 253 41 27 chr4 81613580 81613726 -102674936 + Charlie8 DNA MER1_type 89 236 -2181 215 243 81 14 chr4 81613839 81613913 -102674749 + L2 LINE L2 2553 2631 -683 630 256 97 0 chr4 81613953 81614148 -102674514 + LTR33A LTR ERVL 2 215 -308 356 203 57 41 chr4 81614213 81614336 -102674326 - LTR33 LTR ERVL 0 521 397 949 159 87 34 chr4 81614492 81614700 -102673962 - MER20 DNA MER1_type 0 219 1 271 253 27 0 chr4 81614713 81614788 -102673874 - LTR33 LTR ERVL -424 97 21 354 337 72 42 chr4 81614794 81615129 -102673533 + L2 LINE L2 2969 3313 0 666 248 34 44 chr4 81615354 81615560 -102673102 + MIR SINE MIR 13 216 -46 24 32 0 0 chr4 81615601 81615632 -102673030 + AT_rich Low_complexity Low_complexity 1 31 0 262 214 179 0 chr4 81616686 81616770 -102671892 - L2 LINE L2 -2 3270 3172 24 0 0 0 chr4 81616789 81616813 -102671849 + AT_rich Low_complexity Low_complexity 1 24 0 570 296 173 40 chr4 81616826 81617248 -102671414 - L2 LINE L2 -346 2968 2491 41 36 0 0 chr4 81617667 81617722 -102670940 + AT_rich Low_complexity Low_complexity 1 55 0 185 394 0 0 chr4 81619160 81619226 -102669436 + L2 LINE L2 3197 3262 -10 55 29 0 0 chr4 81620505 81620574 -102668088 + AT_rich Low_complexity Low_complexity 1 69 0 201 133 0 0 chr4 81620720 81620750 -102667912 + (TG)n Simple_repeat Simple_repeat 1 30 0 24 53 0 0 chr4 81621276 81621314 -102667348 + AT_rich Low_complexity Low_complexity 1 38 0 279 254 15 0 chr4 81621380 81621447 -102667215 + L2 LINE L2 3244 3311 -2 2308 130 97 5 chr4 81621529 81621921 -102666741 + MSTA LTR MaLR 1 428 0 459 318 19 22 chr4 81622124 81622450 -102666212 + MER20B DNA MER1_type 114 505 -278 779 229 44 15 chr4 81622588 81622859 -102665803 + MER20B DNA MER1_type 505 783 0 315 330 92 0 chr4 81624116 81624225 -102664437 + L3 LINE CR1 1417 1535 -42 2220 107 7 10 chr4 81624694 81624994 -102663668 + AluSx SINE Alu 1 299 -13 359 266 25 0 chr4 81625188 81625267 -102663395 + L2 LINE L2 3191 3271 -1 2349 107 7 0 chr4 81626526 81626835 -102661827 + AluSx SINE Alu 1 311 -1 32 0 0 0 chr4 81627057 81627089 -102661573 + AT_rich Low_complexity Low_complexity 1 32 0 325 261 168 0 chr4 81627528 81627646 -102661016 + L2 LINE L2 1909 2046 -1268 824 240 58 21 chr4 81627646 81627888 -102660774 + MIR SINE MIR 2 252 -10 195 42 0 0 chr4 81627902 81627926 -102660736 + (TTA)n Simple_repeat Simple_repeat 3 26 0 608 311 212 28 chr4 81628005 81628651 -102660011 + L2 LINE L2 2213 2977 -337 206 289 39 0 chr4 81628880 81628932 -102659730 + L2 LINE L2 3134 3187 -85 25 0 0 0 chr4 81629376 81629401 -102659261 + AT_rich Low_complexity Low_complexity 1 25 0 291 301 12 0 chr4 81629502 81629585 -102659077 + CT-rich Low_complexity Low_complexity 1 84 0 1777 127 49 78 chr4 81629611 81629997 -102658665 - THE1C LTR MaLR 0 375 1 27 49 0 0 chr4 81630073 81630114 -102658548 + AT_rich Low_complexity Low_complexity 1 41 0 864 213 45 80 chr4 81630577 81630790 -102657872 + L2 LINE L2 3011 3211 -102 2446 82 3 0 chr4 81630790 81631094 -102657568 - AluY SINE Alu -6 305 1 864 213 45 80 chr4 81631094 81631194 -102657468 + L2 LINE L2 3211 3313 0 2381 168 40 25 chr4 81632090 81632566 -102656096 + LTR42 LTR ERVL 2 484 -11 232 271 83 52 chr4 81632923 81633019 -102655643 - MIR SINE MIR -72 190 92 740 270 10 20 chr4 81633619 81633819 -102654843 + MIR SINE MIR 64 261 -1 426 310 99 6 chr4 81633898 81634069 -102654593 - MIR SINE MIR -70 192 6 586 263 12 35 chr4 81634109 81634263 -102654399 - MIR SINE MIR -26 236 85 1993 139 134 11 chr4 81634263 81634644 -102654018 - MSTA LTR MaLR 0 428 1 586 263 12 35 chr4 81634644 81634660 -102654002 - MIR SINE MIR -177 85 70 201 167 0 133 chr4 81635197 81635257 -102653405 - MER91 DNA MER1_type 0 196 145 700 277 82 0 chr4 81635867 81636062 -102652600 - MIR SINE MIR -48 214 4 185 359 39 26 chr4 81637359 81637437 -102651225 - L2 LINE L2 -41 3231 3153 599 211 108 57 chr4 81637439 81637579 -102651083 - MER105 DNA DNA 0 204 50 1789 204 49 24 chr4 81637579 81638088 -102650574 + Charlie1b DNA MER1_type 2 523 0 599 211 108 57 chr4 81638088 81638141 -102650521 - MER105 DNA DNA -154 50 1 1542 158 68 0 chr4 81638154 81638419 -102650243 - AluJo SINE Alu -26 286 4 186 300 83 0 chr4 81639229 81639289 -102649373 - MIR SINE MIR -95 113 49 1449 173 59 16 chr4 81639903 81640210 -102648452 + MER2 DNA MER2_type 25 344 -1 643 206 136 60 chr4 81640244 81640443 -102648219 + MER8 DNA MER2_type 3 216 -23 1974 152 46 6 chr4 81641213 81641562 -102647100 - MLT1A1 LTR MaLR 0 365 3 583 272 87 6 chr4 81641929 81642102 -102646560 + MIR SINE MIR 76 262 0 544 301 56 119 chr4 81642147 81642718 -102645944 - L3 LINE CR1 -5 1572 1038 201 333 10 0 chr4 81642945 81643047 -102645615 + (TCTCTG)n Simple_repeat Simple_repeat 3 105 0 275 351 0 0 chr4 81643063 81643140 -102645522 - L2 LINE L2 -2 3270 3194 447 301 124 0 chr4 81643350 81643503 -102645159 - MER5A DNA MER1_type 0 189 18 2041 118 10 16 chr4 81643711 81643879 -102644783 - AluSx SINE Alu -9 303 136 2271 95 0 3 chr4 81643879 81644174 -102644488 - AluY SINE Alu -17 294 1 2041 118 10 16 chr4 81644174 81644310 -102644352 - AluSx SINE Alu -176 136 1 208 259 49 0 chr4 81644903 81644984 -102643678 + (TA)n Simple_repeat Simple_repeat 1 85 0 318 26 0 0 chr4 81645051 81645090 -102643572 + (CA)n Simple_repeat Simple_repeat 2 40 0 253 360 20 0 chr4 81645208 81645308 -102643354 + L2 LINE L2 2564 2665 -649 574 309 157 5 chr4 81645325 81645529 -102643133 + MIR SINE MIR 28 262 0 1178 276 47 32 chr4 81645546 81646161 -102642501 + L1ME3 LINE L1 5328 5951 -211 305 293 86 109 chr4 81646449 81647040 -102641622 + L2 LINE L2 2700 3272 0 292 194 0 0 chr4 81647099 81647166 -102641496 - MER116 DNA Mariner 0 80 14 189 0 0 0 chr4 81647763 81647784 -102640878 + (TG)n Simple_repeat Simple_repeat 2 22 0 221 321 29 73 chr4 81649183 81649320 -102639342 + L2 LINE L2 3172 3302 -11 205 324 14 0 chr4 81649297 81649430 -102639232 - L2 LINE L2 -4 3268 3137 * 261 0 0 0 chr4 81649704 81649733 -102638929 + (CA)n Simple_repeat Simple_repeat 1 29 0 234 0 0 0 chr4 81652953 81652979 -102635683 + (TC)n Simple_repeat Simple_repeat 2 27 0 * 387 0 0 0 chr4 81652978 81653021 -102635641 + (TG)n Simple_repeat Simple_repeat 2 44 0 297 243 0 39 chr4 81654625 81654728 -102633934 + MLT1K LTR MaLR 471 569 -19 3403 149 40 5 chr4 81655207 81655337 -102633325 + L1MA6 LINE L1 5648 5772 -528 252 59 0 0 chr4 81655337 81655371 -102633291 + (CA)n Simple_repeat Simple_repeat 1 34 0 3403 149 40 5 chr4 81655371 81655871 -102632791 + L1MA6 LINE L1 5772 6300 0 1648 249 26 33 chr4 81655920 81656757 -102631905 + L1ME2 LINE L1 4943 5770 -394 1005 211 140 19 chr4 81656767 81657075 -102631587 - MER2 DNA MER2_type 0 345 1 1074 167 65 0 chr4 81657205 81657451 -102631211 - L1MA7 LINE L1 -2 6289 6028 1733 174 3 14 chr4 81657482 81657776 -102630886 - AluJb SINE Alu -21 291 1 1379 133 0 5 chr4 81657785 81658031 -102630631 - AluJb SINE Alu 0 332 88 1784 158 4 0 chr4 81658225 81658484 -102630178 + AluSx SINE Alu 1 260 -52 2234 104 0 0 chr4 81658700 81658988 -102629674 + AluSx SINE Alu 25 312 0 1241 216 20 40 chr4 81659598 81659954 -102628708 + L1ME2 LINE L1 5820 6329 -5 387 215 0 156 chr4 81660385 81660520 -102628142 - MER81 DNA DNA 0 114 1 723 93 9 0 chr4 81661025 81661132 -102627530 - LTR47A LTR ERVL -1 451 344 188 35 35 0 chr4 81661180 81661209 -102627453 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1529 122 35 8 chr4 81661723 81661977 -102626685 - L1MC2 LINE L1 -9 6335 6075 32 26 0 0 chr4 81662788 81662827 -102625835 + AT_rich Low_complexity Low_complexity 1 39 0 478 335 28 11 chr4 81663377 81663553 -102625109 + MIR SINE MIR 81 259 -3 21 0 0 0 chr4 81663902 81663923 -102624739 + AT_rich Low_complexity Low_complexity 1 21 0 192 365 63 16 chr4 81664269 81664395 -102624267 + MIR3 SINE MIR 43 174 -34 241 270 0 0 chr4 81664711 81664774 -102623888 + (TTA)n Simple_repeat Simple_repeat 3 65 0 388 289 0 19 chr4 81664908 81665012 -102623650 - MIR SINE MIR -77 185 84 1959 109 10 26 chr4 81665113 81665424 -102623238 + L1P3 LINE L1 7 312 -6149 * 3702 80 0 106 chr4 81665420 81665763 -102622899 + L1P LINE L1 2500 2733 -3413 2082 137 3 3 chr4 81665763 81666070 -102622592 + AluSc SINE Alu 1 307 -2 3702 80 0 106 chr4 81666070 81666424 -102622238 + L1P LINE L1 2733 3123 -3023 7152 46 7 2 chr4 81666424 81667942 -102620720 + L1PA7 LINE L1 4630 6151 -3 1868 177 20 0 chr4 81668965 81669270 -102619392 + AluJb SINE Alu 1 311 -1 438 237 119 8 chr4 81671038 81671156 -102617506 + L2 LINE L2 3183 3313 0 197 286 0 0 chr4 81671222 81671271 -102617391 + L2 LINE L2 2635 2683 -631 2436 47 3 5 chr4 81671271 81671632 -102617030 - MLT2A1 LTR ERVL 0 444 1 655 120 0 0 chr4 81671781 81671881 -102616781 + HERVK9 LTR ERVK 5517 5616 -300 505 104 0 0 chr4 81671888 81671965 -102616697 + MER9 LTR ERVK 435 511 0 373 366 51 6 chr4 81671984 81672159 -102616503 + L1 LINE L1 4942 5124 -1022 477 296 109 11 chr4 81672262 81672536 -102616126 + MLT1I LTR MaLR 105 405 -4 679 208 180 0 chr4 81672556 81672734 -102615928 + LTR54B LTR ERV1 1 210 -288 2713 146 53 68 chr4 81672876 81672923 -102615739 + MER92B LTR ERV1 2 48 -588 2244 85 0 0 chr4 81672923 81673227 -102615435 - AluSc SINE Alu 0 304 1 2713 146 53 68 chr4 81673227 81673823 -102614839 + MER92B LTR ERV1 48 636 0 2362 116 0 0 chr4 81673981 81674292 -102614370 + AluSx SINE Alu 1 311 -1 415 254 95 0 chr4 81674356 81674482 -102614180 + L3 LINE CR1 1141 1278 -299 450 194 157 9 chr4 81674553 81674685 -102613977 + FRAM SINE Alu 26 173 0 377 327 203 0 chr4 81674685 81674902 -102613760 + L3 LINE CR1 1317 1577 0 21 36 0 0 chr4 81675657 81675685 -102612977 + AT_rich Low_complexity Low_complexity 1 28 0 2272 113 0 23 chr4 81676398 81676708 -102611954 + AluSg SINE Alu 1 303 -7 1295 133 14 41 chr4 81677854 81678072 -102610590 + AluJb SINE Alu 83 294 -18 2145 103 111 6 chr4 81678142 81678483 -102610179 + MER51B LTR ERV1 1 377 0 824 191 0 0 chr4 81679277 81679413 -102609249 + AluJo SINE Alu 1 136 -176 3159 60 4 22 chr4 81680180 81680630 -102608032 + LTR7 LTR ERV1 1 442 -8 14407 99 12 21 chr4 81680639 81683413 -102605249 + HERVH LTR ERV1 1 2995 -4718 5411 107 7 2 chr4 81683392 81684242 -102604420 + HERVH LTR ERV1 3140 3993 -3720 * 2790 133 0 7 chr4 81684246 81684862 -102603800 + HERVH LTR ERV1 4490 5149 -2564 1298 127 0 0 chr4 81684892 81685097 -102603565 + HERVH LTR ERV1 5615 5819 -1894 1406 85 47 219 chr4 81685097 81685568 -102603094 + HERVH LTR ERV1 7324 7713 0 3345 66 2 22 chr4 81685568 81686025 -102602637 + LTR7 LTR ERV1 1 448 -2 3803 159 35 14 chr4 81686202 81686895 -102601767 - MER39 LTR ERV1 0 707 1 201 244 0 0 chr4 81688001 81688046 -102600616 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 45 45 0 0 chr4 81689047 81689113 -102599549 + AT_rich Low_complexity Low_complexity 1 66 0 231 326 133 10 chr4 81689201 81689299 -102599363 - L2 LINE L2 -40 3232 3123 392 279 137 11 chr4 81689712 81689895 -102598767 - MIR SINE MIR 0 262 57 525 243 200 5 chr4 81689945 81690130 -102598532 + MIR SINE MIR 14 234 -28 382 265 74 56 chr4 81690156 81690318 -102598344 - MIR SINE MIR -36 226 62 347 364 42 13 chr4 81690387 81690623 -102598039 - L2 LINE L2 -639 2675 2433 26 0 0 0 chr4 81690825 81690851 -102597811 + AT_rich Low_complexity Low_complexity 1 26 0 292 294 12 12 chr4 81691051 81691136 -102597526 + L2 LINE L2 3188 3272 0 1507 189 59 24 chr4 81691291 81691666 -102596996 + MLT1B LTR MaLR 1 388 -2 878 204 6 0 chr4 81691779 81691936 -102596726 + FAM SINE Alu 1 158 -17 219 69 0 0 chr4 81691939 81691968 -102596694 + (CATA)n Simple_repeat Simple_repeat 4 32 0 647 282 28 17 chr4 81691996 81692287 -102596375 + L1MC4a LINE L1 6255 6548 -1260 * 1859 269 31 2 chr4 81692286 81692925 -102595737 + L1MC4 LINE L1 7176 7833 -209 22 0 0 0 chr4 81693505 81693527 -102595135 + AT_rich Low_complexity Low_complexity 1 22 0 730 308 39 13 chr4 81694111 81694345 -102594317 + MIR SINE MIR 8 247 -15 3113 96 16 0 chr4 81694545 81694972 -102593690 + MER57B LTR ERV1 1 434 0 2528 65 7 0 chr4 81696220 81696529 -102592133 + AluY SINE Alu 1 311 0 1343 208 58 63 chr4 81696916 81697555 -102591107 - L1MC5 LINE L1 -25 7936 7301 542 208 101 54 chr4 81699296 81699464 -102589198 + MER63A DNA MER1_type 2 177 -33 275 185 19 0 chr4 81699820 81699874 -102588788 - MER94 DNA DNA -79 55 1 552 272 121 85 chr4 81701286 81701723 -102586939 + MLT1J LTR MaLR 1 453 -58 249 214 146 29 chr4 81702285 81702388 -102586274 + MIR SINE MIR 100 214 -48 207 0 0 0 chr4 81702771 81702794 -102585868 + (A)n Simple_repeat Simple_repeat 1 23 0 207 0 0 0 chr4 81703335 81703358 -102585304 + (CA)n Simple_repeat Simple_repeat 1 23 0 557 251 78 26 chr4 81704443 81704714 -102583948 - L1M4 LINE L1 -2206 3940 3656 * 1631 276 47 29 chr4 81704708 81705368 -102583294 + L1ME3A LINE L1 5489 6160 -10 498 290 232 26 chr4 81705466 81705522 -102583140 - LTR16B LTR ERVL 0 464 421 2259 117 0 0 chr4 81705522 81705822 -102582840 + AluSq SINE Alu 1 300 -13 498 290 232 26 chr4 81705822 81706148 -102582514 - LTR16B LTR ERVL -43 421 3 204 40 0 0 chr4 81706190 81706215 -102582447 + (TTTTTA)n Simple_repeat Simple_repeat 1 25 0 2677 211 44 28 chr4 81706235 81706941 -102581721 - L1ME1 LINE L1 -17 6149 5433 1925 140 39 0 chr4 81707471 81707757 -102580905 + AluJb SINE Alu 1 297 -15 228 260 71 58 chr4 81707763 81707917 -102580745 + L1ME LINE L1 5742 5897 -224 23 33 0 0 chr4 81708188 81708218 -102580444 + AT_rich Low_complexity Low_complexity 1 30 0 403 259 43 9 chr4 81709438 81709554 -102579108 - MIR SINE MIR -61 201 82 342 175 79 26 chr4 81709849 81709963 -102578699 - L1ME3 LINE L1 -334 5828 5709 8125 143 116 75 chr4 81709988 81710718 -102577944 + L1MCa LINE L1 29 728 -5698 234 62 0 0 chr4 81710718 81710750 -102577912 + (CA)n Simple_repeat Simple_repeat 1 32 0 8125 143 116 75 chr4 81710750 81711444 -102577218 + L1MCa LINE L1 728 1392 -5034 6741 69 16 2 chr4 81711444 81712693 -102575969 + L1PA10 LINE L1 4902 6165 -3 8125 143 116 75 chr4 81712693 81713391 -102575271 + L1MCa LINE L1 1392 2238 -4188 600 174 43 0 chr4 81713501 81713616 -102575046 - AluJo SINE Alu -178 134 15 24 0 0 0 chr4 81713634 81713658 -102575004 + AT_rich Low_complexity Low_complexity 1 24 0 700 212 122 25 chr4 81713762 81714119 -102574543 - L1ME3 LINE L1 -594 5576 5192 2061 140 35 27 chr4 81714194 81714566 -102574096 + THE1C LTR MaLR 1 375 0 671 285 84 14 chr4 81715014 81715228 -102573434 + MIR SINE MIR 4 232 -30 455 261 93 42 chr4 81715276 81715728 -102572934 - L1ME3 LINE L1 -1291 4855 4381 3098 101 54 69 chr4 81715756 81716291 -102572371 - MER1A DNA MER1_type 0 527 1 319 218 0 89 chr4 81716744 81716845 -102571817 + MLT1E LTR MaLR 72 163 -430 1479 243 95 7 chr4 81716849 81717281 -102571381 + MLT1E LTR MaLR 122 591 -2 381 215 143 80 chr4 81718624 81718861 -102569801 - LTR16C LTR ERVL -15 476 225 871 265 0 0 chr4 81719080 81719261 -102569401 - MIR SINE MIR -76 186 6 242 143 20 0 chr4 81719609 81719658 -102569004 + (CA)n Simple_repeat Simple_repeat 1 50 0 21 0 0 0 chr4 81719688 81719709 -102568953 + AT_rich Low_complexity Low_complexity 1 21 0 3824 194 88 6 chr4 81719857 81720674 -102567988 + L1PB1 LINE L1 6 754 -6109 185 62 0 31 chr4 81720674 81720706 -102567956 + (CCCCCA)n Simple_repeat Simple_repeat 5 35 0 3824 194 88 6 chr4 81720706 81721405 -102567257 + L1PB1 LINE L1 754 1792 -5071 14390 167 18 14 chr4 81721507 81724352 -102564310 + L1PB1 LINE L1 2546 5435 -1432 2169 107 7 13 chr4 81724352 81724488 -102564174 + AluSp SINE Alu 1 136 -177 2369 97 0 7 chr4 81724488 81724786 -102563876 + AluSx SINE Alu 1 296 -16 2169 107 7 13 chr4 81724786 81724957 -102563705 + AluSp SINE Alu 136 306 -7 14390 167 18 14 chr4 81724957 81726396 -102562266 + L1PB1 LINE L1 5435 6866 -1 308 302 33 77 chr4 81726591 81726773 -102561889 + L1MEd LINE L1 5 178 -5941 3285 118 14 10 chr4 81726996 81727505 -102561157 + MER9 LTR ERVK 1 511 0 447 174 10 31 chr4 81727505 81727603 -102561059 + HERVK9 LTR ERVK 1 96 -5820 1298 166 41 14 chr4 81727614 81727904 -102560758 - MER4D LTR ERV1 -27 876 579 478 121 0 0 chr4 81727905 81727971 -102560691 + AluS SINE Alu 1 66 -246 3420 78 16 19 chr4 81727972 81728459 -102560203 + HERVK9 LTR ERVK 83 568 -5348 * 29264 82 6 6 chr4 81728457 81731013 -102557649 + HERVK9 LTR ERVK 1424 3982 -1934 2242 98 3 0 chr4 81731013 81731308 -102557354 + AluY SINE Alu 2 297 -14 29264 82 6 6 chr4 81731308 81732787 -102555875 + HERVK9 LTR ERVK 3981 5459 -457 23 54 0 0 chr4 81733641 81733678 -102554984 + AT_rich Low_complexity Low_complexity 1 37 0 211 339 16 50 chr4 81733702 81733823 -102554839 + MIR SINE MIR 138 254 -8 22 0 0 0 chr4 81734016 81734038 -102554624 + AT_rich Low_complexity Low_complexity 1 22 0 226 257 40 14 chr4 81734524 81734598 -102554064 + MIR SINE MIR 124 199 -63 408 248 97 9 chr4 81734972 81735085 -102553577 + MER5A DNA MER1_type 1 123 -66 1829 151 25 160 chr4 81735391 81735922 -102552740 - LTR32 LTR ERVL 0 471 13 377 329 7 20 chr4 81735922 81736068 -102552594 - MIR SINE MIR -10 252 109 241 348 57 21 chr4 81736071 81736212 -102552450 - L2 LINE L2 -1720 1594 1449 * 282 325 0 70 chr4 81736152 81736309 -102552353 - MIR SINE MIR -116 146 1 213 227 10 124 chr4 81736343 81736440 -102552222 + L2 LINE L2 3221 3306 -7 21 36 0 0 chr4 81736486 81736514 -102552148 + AT_rich Low_complexity Low_complexity 1 28 0 35322 93 8 8 chr4 81736668 81742812 -102545850 - L1PA6 LINE L1 0 6154 13 312 320 25 8 chr4 81743024 81743146 -102545516 + MLT1K LTR MaLR 102 225 -363 1160 169 14 10 chr4 81743714 81743921 -102544741 + AluJo SINE Alu 95 302 -10 410 279 178 36 chr4 81744642 81744780 -102543882 + MIR SINE MIR 2 119 -143 1582 175 90 22 chr4 81744780 81745145 -102543517 + MLT1B LTR MaLR 1 390 0 410 279 178 36 chr4 81745145 81745225 -102543437 + MIR SINE MIR 119 251 -11 357 226 82 82 chr4 81745803 81745962 -102542700 + L1ME4a LINE L1 5952 6110 -11 189 118 118 0 chr4 81746925 81746959 -102541703 + L2 LINE L2 3270 3307 -6 3106 91 54 2 chr4 81747456 81747916 -102540746 + L1PB2 LINE L1 5665 6148 -3 1810 170 7 3 chr4 81749269 81749557 -102539105 + AluJb SINE Alu 1 289 -23 2236 117 0 0 chr4 81749563 81749863 -102538799 + AluSx SINE Alu 1 300 -12 350 261 59 8 chr4 81750166 81750285 -102538377 - MER94 DNA DNA -8 126 2 292 257 95 89 chr4 81750285 81750464 -102538198 - L2 LINE L2 -229 3043 2864 207 258 32 0 chr4 81750438 81750500 -102538162 + MIR SINE MIR 20 83 -179 * 630 261 104 57 chr4 81750497 81750995 -102537667 + L2 LINE L2 2661 3250 -63 210 71 0 0 chr4 81751032 81751060 -102537602 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 303 28 0 0 chr4 81752524 81752560 -102536102 + (TA)n Simple_repeat Simple_repeat 2 37 0 1995 116 46 13 chr4 81752952 81753254 -102535408 - AluSx SINE Alu 0 312 1 601 100 0 0 chr4 81754457 81754537 -102534125 + AluS SINE Alu 4 83 -230 566 140 11 0 chr4 81804541 81804634 -102484028 - L1MC3 LINE L1 -940 6845 6752 709 207 0 36 chr4 81805793 81805933 -102482729 - FAM SINE Alu -50 135 1 10567 144 16 60 chr4 81805937 81807261 -102481401 + L1MA4 LINE L1 3202 4583 -1717 1507 196 34 3 chr4 81807261 81807552 -102481110 + AluJb SINE Alu 1 300 -12 10567 144 16 60 chr4 81807552 81807577 -102481085 + L1MA4 LINE L1 4583 4608 -1692 1869 141 0 4 chr4 81807577 81807854 -102480808 + AluSx SINE Alu 1 276 -36 207 0 0 0 chr4 81807858 81807881 -102480781 + (CAAAA)n Simple_repeat Simple_repeat 5 27 0 10567 144 16 60 chr4 81807881 81809779 -102478883 + L1MA4 LINE L1 4611 6300 0 1950 185 26 10 chr4 81809879 81810263 -102478399 - MLT1B LTR MaLR 0 390 1 55 86 0 0 chr4 81810286 81810425 -102478237 + AT_rich Low_complexity Low_complexity 1 139 0 2518 209 45 43 chr4 81810616 81811266 -102477396 - L1ME1 LINE L1 -5 6161 5511 1830 166 3 3 chr4 81811266 81811573 -102477089 + AluSx SINE Alu 1 307 -5 4443 264 82 23 chr4 81811573 81812654 -102476008 - L1ME1 LINE L1 -913 5233 4217 231 36 0 0 chr4 81812654 81812682 -102475980 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1551 164 72 4 chr4 81812685 81812948 -102475714 - AluJb SINE Alu -30 282 2 4443 264 82 23 chr4 81812948 81813435 -102475227 - L1ME1 LINE L1 -1930 4216 3464 1880 149 10 29 chr4 81813435 81813743 -102474919 + AluSx SINE Alu 1 302 -10 4443 264 82 23 chr4 81813743 81813915 -102474747 - L1ME1 LINE L1 -2682 3464 3304 262 246 237 0 chr4 81814068 81814182 -102474480 + MIR3 SINE MIR 65 205 -3 2461 86 0 6 chr4 81815120 81815434 -102473228 + AluSx SINE Alu 1 312 0 255 273 26 0 chr4 81816013 81816090 -102472572 + L1M4 LINE L1 2680 2758 -3388 849 182 68 17 chr4 81817914 81818037 -102470625 - MER5A DNA MER1_type -1 188 52 20546 28 2 1 chr4 81818037 81821284 -102467378 - L1PA3 LINE L1 -1 6154 2902 849 182 68 17 chr4 81821284 81821336 -102467326 - MER5A DNA MER1_type -137 52 4 2006 133 7 0 chr4 81821899 81822193 -102466469 - AluSx SINE Alu -16 296 1 345 412 0 8 chr4 81822211 81822330 -102466332 + L2 LINE L2 3138 3255 -17 195 129 0 0 chr4 81822468 81822499 -102466163 + (CAG)n Simple_repeat Simple_repeat 1 31 0 217 327 47 0 chr4 81823163 81823261 -102465401 + MIR SINE MIR 53 139 -69 442 103 97 131 chr4 81824684 81824769 -102463893 + L1MB7 LINE L1 6045 6125 -59 1646 184 14 3 chr4 81824769 81825063 -102463599 + AluJo SINE Alu 1 297 -15 442 103 97 131 chr4 81825063 81825122 -102463540 + L1MB7 LINE L1 6125 6184 0 313 253 24 12 chr4 81825164 81825247 -102463415 + GA-rich Low_complexity Low_complexity 3 86 0 205 211 0 0 chr4 81825907 81825945 -102462717 + (TA)n Simple_repeat Simple_repeat 1 38 0 1645 172 17 34 chr4 81827809 81828105 -102460557 + AluJo SINE Alu 1 291 -21 405 219 12 50 chr4 81828206 81828366 -102460296 + L1ME LINE L1 5045 5198 -948 2746 15 0 0 chr4 81828368 81828859 -102459803 - L1P1 LINE L1 -605 5550 5060 * 4554 19 0 4 chr4 81828837 81829371 -102459291 + L1HS LINE L1 5622 6153 -2 1495 172 58 53 chr4 81829373 81829822 -102458840 + L1ME LINE L1 5192 5660 -506 22 35 0 0 chr4 81830314 81830343 -102458319 + AT_rich Low_complexity Low_complexity 1 29 0 189 107 0 0 chr4 81830413 81830441 -102458221 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 607 261 108 20 chr4 81830612 81830815 -102457847 - MIR SINE MIR -10 252 32 342 0 0 0 chr4 81831476 81831514 -102457148 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1749 87 99 8 chr4 81831522 81831764 -102456898 - AluSx SINE Alu -48 264 1 719 159 24 0 chr4 81831832 81831958 -102456704 - FLAM_C SINE Alu -13 130 2 1510 120 105 0 chr4 81833221 81833479 -102455183 + L1PA16 LINE L1 5882 6166 0 318 87 0 0 chr4 81833865 81833911 -102454751 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 2259 99 3 3 chr4 81834687 81834981 -102453681 - AluSx SINE Alu -18 294 1 413 316 166 18 chr4 81835178 81835504 -102453158 - L1MC4a LINE L1 -1963 5845 5472 2578 58 0 0 chr4 81835537 81835846 -102452816 + AluY SINE Alu 1 309 -2 324 308 192 8 chr4 81836321 81836561 -102452101 - L1MC4a LINE L1 -1082 5064 4781 252 271 21 0 chr4 81836882 81836930 -102451732 - L2 LINE L2 -87 3185 3137 2272 112 0 10 chr4 81837006 81837319 -102451343 - AluSx SINE Alu 0 312 3 2257 84 0 29 chr4 81837852 81838160 -102450502 - AluSq SINE Alu -14 299 1 260 254 42 0 chr4 81838242 81838313 -102450349 + MIR SINE MIR 78 151 -111 3066 83 52 5 chr4 81839280 81839724 -102448938 + MER4C LTR ERV1 1 465 0 332 257 114 57 chr4 81840396 81840571 -102448091 + MLT1J1 LTR MaLR 244 428 -18 807 256 100 110 chr4 81841360 81841879 -102446783 + MER51C LTR ERV1 127 640 0 2528 65 3 0 chr4 81843241 81843548 -102445114 + AluSc SINE Alu 1 308 -1 1670 125 109 0 chr4 81843829 81844115 -102444547 + AluSx SINE Alu 2 315 0 1021 255 173 49 chr4 81844497 81845212 -102443450 + L2 LINE L2 2458 3264 -49 2858 0 0 0 chr4 81845212 81845517 -102443145 - AluYa5 SINE Alu -6 305 1 1021 255 173 49 chr4 81845517 81845574 -102443088 + L2 LINE L2 3264 3313 0 24 32 0 0 chr4 81847123 81847154 -102441508 + AT_rich Low_complexity Low_complexity 1 31 0 2123 119 24 0 chr4 81847837 81848130 -102440532 - AluSx SINE Alu -12 300 1 841 261 148 36 chr4 81848323 81848793 -102439869 + L2 LINE L2 2729 3251 -62 2236 122 0 3 chr4 81851360 81851672 -102436990 - AluSx SINE Alu -1 311 1 580 295 128 29 chr4 81852712 81852993 -102435669 - L2 LINE L2 0 3313 3005 1669 189 0 7 chr4 81853941 81854237 -102434425 - AluJb SINE Alu -18 294 1 21 0 0 0 chr4 81854246 81854267 -102434395 + AT_rich Low_complexity Low_complexity 1 21 0 423 188 26 0 chr4 81854267 81854384 -102434278 + (TA)n Simple_repeat Simple_repeat 1 120 0 351 0 0 0 chr4 81854442 81854481 -102434181 + (CA)n Simple_repeat Simple_repeat 2 40 0 1667 164 4 7 chr4 81854481 81854756 -102433906 - AluJo SINE Alu -38 274 1 311 0 26 0 chr4 81855360 81855399 -102433263 + (CA)n Simple_repeat Simple_repeat 2 41 0 348 176 0 0 chr4 81856795 81856863 -102431799 + CT-rich Low_complexity Low_complexity 2 69 0 1915 158 10 0 chr4 81856869 81857173 -102431489 - AluSx SINE Alu -5 307 1 2080 137 0 13 chr4 81857406 81857720 -102430942 + AluSx SINE Alu 1 310 -2 1457 217 14 62 chr4 81857867 81858305 -102430357 + L1ME1 LINE L1 5745 6161 -5 676 153 29 7 chr4 81858498 81858635 -102430027 - L1MB2 LINE L1 0 6171 6032 1893 153 9 12 chr4 81858636 81858977 -102429685 - L1MB2 LINE L1 -182 5986 5647 597 185 0 0 chr4 81858979 81859071 -102429591 - Tigger2 DNA MER2_type -10 2708 2617 785 179 48 0 chr4 81859079 81859224 -102429438 - L1MB2 LINE L1 -535 5648 5497 410 188 78 171 chr4 81860045 81860206 -102428456 + MLT1E3 LTR MaLR 237 473 -181 218 173 39 0 chr4 81860247 81860299 -102428363 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 860 213 30 0 chr4 81860996 81861165 -102427497 - FAM SINE Alu -1 174 1 206 224 121 0 chr4 81861728 81861786 -102426876 - L2 LINE L2 -1 3312 3248 826 276 100 32 chr4 81861791 81862131 -102426531 - L2 LINE L2 0 3313 2951 3336 158 42 6 chr4 81862135 81862721 -102425941 + Ricksha DNA DNA 1 720 -1943 1103 241 216 3 chr4 81862750 81863120 -102425542 - L2 LINE L2 -731 2583 2135 233 167 167 0 chr4 81863221 81863275 -102425387 - L1MC5 LINE L1 -383 7578 7516 248 279 0 23 chr4 81863948 81864034 -102424628 + GA-rich Low_complexity Low_complexity 1 84 0 1248 160 14 64 chr4 81864124 81864405 -102424257 - MER46C DNA MER2_type -68 270 4 1032 183 43 5 chr4 81865381 81865567 -102423095 + AluJb SINE Alu 4 196 -116 819 188 65 75 chr4 81865684 81865992 -102422670 + MER113 DNA MER1_type? 79 383 -138 189 107 0 0 chr4 81866011 81866039 -102422623 + (A)n Simple_repeat Simple_repeat 1 28 0 654 186 16 40 chr4 81866602 81866726 -102421936 - Tigger5 DNA MER2_type -2085 238 118 11303 33 6 2 chr4 81866726 81868225 -102420437 + L1P2 LINE L1 4021 5521 -634 1160 66 7 0 chr4 81868225 81868357 -102420305 + L1PA4 LINE L1 6000 6151 -4 629 167 0 9 chr4 81868367 81868481 -102420181 - Tigger5 DNA MER2_type -2210 113 1 560 168 0 26 chr4 81868491 81868604 -102420058 + MER3 DNA MER1_type 95 204 -5 856 269 70 71 chr4 81868618 81868913 -102419749 + L2 LINE L2 2611 2905 -408 2316 132 49 62 chr4 81868913 81869345 -102419317 - MSTB LTR MaLR 0 426 1 856 269 70 71 chr4 81869345 81869699 -102418963 + L2 LINE L2 2905 3307 -6 222 299 0 30 chr4 81869737 81869804 -102418858 - L2 LINE L2 -3 3310 3246 567 291 173 25 chr4 81869899 81870222 -102418440 + L3 LINE CR1 1190 1560 -17 245 167 0 0 chr4 81870436 81870478 -102418184 + MER116 DNA Mariner 1 42 -38 1283 126 101 81 chr4 81872128 81872229 -102416433 + MER68 LTR ERV1 3 100 -462 2331 84 3 0 chr4 81872229 81872527 -102416135 - AluY SINE Alu -12 299 1 1283 126 101 81 chr4 81872527 81872672 -102415990 + MER68 LTR ERV1 100 254 -308 1539 234 57 85 chr4 81872777 81873456 -102415206 - L1MEc LINE L1 -4531 1865 1206 3630 236 39 9 chr4 81873503 81874403 -102414259 - L1MEc LINE L1 -5426 970 44 771 77 109 148 chr4 81874652 81874835 -102413827 + AluSg/x SINE Alu 131 306 -6 272 250 125 9 chr4 81875365 81875477 -102413185 - L1MC/D LINE L1 -1971 5837 5713 2441 131 33 0 chr4 81875876 81876265 -102412397 + HSMAR2 DNA Mariner 900 1301 -1 2281 119 0 0 chr4 81876638 81876941 -102411721 - AluSx SINE Alu -7 305 3 1009 104 0 8 chr4 81876942 81877076 -102411586 - AluSq/x SINE Alu -179 133 1 1589 172 4 26 chr4 81877527 81877800 -102410862 - AluJo SINE Alu -45 267 1 8746 70 14 1 chr4 81878106 81880050 -102408612 - L1PA6 LINE L1 -5 6149 4190 20423 120 17 15 chr4 81880051 81883276 -102405386 - L1PA6 LINE L1 -2902 3244 11 309 263 72 40 chr4 81883636 81883788 -102404874 + L2 LINE L2 3122 3278 -35 286 206 0 55 chr4 81884212 81884285 -102404377 + LTR30 LTR ERV1 552 620 -102 481 271 0 41 chr4 81884644 81884766 -102403896 - MER45 DNA AcHobo -835 118 2 314 264 128 58 chr4 81886252 81886510 -102402152 + L1MC4a LINE L1 5736 6013 -108 2329 88 3 0 chr4 81886545 81886841 -102401821 - AluSp SINE Alu -16 297 1 2025 119 3 7 chr4 81887036 81887331 -102401331 - AluSx SINE Alu -18 294 1 26 30 0 0 chr4 81887410 81887443 -102401219 + AT_rich Low_complexity Low_complexity 1 33 0 305 301 59 7 chr4 81889868 81890021 -102398641 + MER103 DNA DNA 3 163 -3 24 32 0 0 chr4 81890382 81890413 -102398249 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 81891441 81891462 -102397200 + AT_rich Low_complexity Low_complexity 1 21 0 2214 94 0 0 chr4 81892167 81892454 -102396208 - AluSc SINE Alu -7 302 16 21 57 0 0 chr4 81893057 81893092 -102395570 + AT_rich Low_complexity Low_complexity 1 35 0 1435 232 40 30 chr4 81893167 81893692 -102394970 - L1ME1 LINE L1 -184 5982 5491 1436 126 0 81 chr4 81893788 81894035 -102394627 - AluJb SINE Alu -85 227 1 715 249 37 50 chr4 81894467 81894708 -102393954 + LTR40c LTR ERVL 31 268 -197 1754 29 0 10 chr4 81894718 81894922 -102393740 - AluY SINE Alu -13 298 97 27 0 0 0 chr4 81895227 81895254 -102393408 + AT_rich Low_complexity Low_complexity 1 27 0 1006 216 32 0 chr4 81895714 81895904 -102392758 + LTR40b LTR ERVL 261 456 -6 2315 188 42 43 chr4 81896545 81897051 -102391611 + MLT1D LTR MaLR 1 505 0 1883 153 50 36 chr4 81897242 81897601 -102391061 + MER47A DNA MER2_type 3 366 0 2259 76 0 0 chr4 81897906 81898182 -102390480 + AluSq SINE Alu 1 276 -37 195 69 0 0 chr4 81898188 81898217 -102390445 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 268 228 13 25 chr4 81898223 81898302 -102390360 + MLT1K LTR MaLR 509 586 -2 881 55 0 0 chr4 81899320 81899429 -102389233 + L1PA5 LINE L1 6038 6146 -8 189 0 0 0 chr4 81899429 81899450 -102389212 + (TA)n Simple_repeat Simple_repeat 1 21 0 190 258 81 0 chr4 81899844 81899906 -102388756 - MIR SINE MIR -106 156 90 289 266 143 19 chr4 81900423 81900577 -102388085 + L1ME4a LINE L1 5938 6110 -11 677 280 38 51 chr4 81900804 81901049 -102387613 - MIR SINE MIR -6 256 13 2046 139 3 0 chr4 81901578 81901879 -102386783 - AluSx SINE Alu -10 302 1 533 270 124 13 chr4 81903223 81903530 -102385132 - L1ME4a LINE L1 -252 5869 5529 22 70 0 0 chr4 81903741 81903784 -102384878 + AT_rich Low_complexity Low_complexity 1 43 0 807 168 0 8 chr4 81904686 81904811 -102383851 + FLAM_C SINE Alu 1 124 -19 2304 107 3 0 chr4 81905142 81905442 -102383220 + AluSx SINE Alu 1 301 -11 2168 125 0 7 chr4 81906606 81906909 -102381753 + AluSq SINE Alu 1 301 -12 1693 140 0 75 chr4 81906909 81907230 -102381432 + AluJb SINE Alu 1 298 -14 21 0 0 0 chr4 81907919 81907940 -102380722 + AT_rich Low_complexity Low_complexity 1 21 0 2322 104 0 0 chr4 81908024 81908333 -102380329 + AluSx SINE Alu 1 309 -3 25 51 0 0 chr4 81909605 81909644 -102379018 + AT_rich Low_complexity Low_complexity 1 39 0 577 224 29 58 chr4 81909748 81909922 -102378740 - MIR3 SINE MIR -6 202 34 191 228 0 18 chr4 81910228 81910285 -102378377 + CT-rich Low_complexity Low_complexity 4 59 0 1240 180 9 18 chr4 81910304 81910526 -102378136 - AluJo SINE Alu -92 220 1 1949 134 7 26 chr4 81911871 81912178 -102376484 + AluSx SINE Alu 1 301 -11 415 271 111 52 chr4 81912189 81912517 -102376145 + L1ME LINE L1 5083 5426 -750 468 288 114 10 chr4 81912573 81912872 -102375790 + L1ME LINE L1 5490 5819 -302 293 156 0 16 chr4 81912981 81913045 -102375617 + (TA)n Simple_repeat Simple_repeat 2 64 0 272 204 0 0 chr4 81913617 81913666 -102374996 + L2 LINE L2 3265 3313 0 601 285 46 22 chr4 81914277 81914518 -102374144 - MIR SINE MIR 0 262 17 271 339 128 0 chr4 81914655 81914764 -102373898 - MIR3 SINE MIR -78 130 8 26 0 0 0 chr4 81915900 81915926 -102372736 + AT_rich Low_complexity Low_complexity 1 26 0 23 54 0 0 chr4 81916037 81916074 -102372588 + AT_rich Low_complexity Low_complexity 1 37 0 272 305 93 20 chr4 81916078 81916229 -102372433 - MIR SINE MIR -61 201 40 1673 170 28 3 chr4 81916373 81916662 -102372000 - AluJo SINE Alu -14 298 3 224 170 19 19 chr4 81917829 81917882 -102370780 + A-rich Low_complexity Low_complexity 2 54 0 1943 149 0 9 chr4 81918281 81918603 -102370059 - MER47A DNA MER2_type -28 338 20 181 292 21 0 chr4 81919093 81919141 -102369521 + MIR SINE MIR 93 141 -67 1111 228 29 0 chr4 81919529 81919770 -102368892 + MIR SINE MIR 13 260 -2 228 67 0 0 chr4 81922206 81922236 -102366426 + (CA)n Simple_repeat Simple_repeat 1 30 0 1691 175 28 3 chr4 81922534 81922825 -102365837 + AluJo SINE Alu 3 300 -12 367 106 30 0 chr4 81924192 81924258 -102364404 + L1MB8 LINE L1 6110 6177 -1 291 28 0 0 chr4 81924811 81924847 -102363815 + (ATG)n Simple_repeat Simple_repeat 3 38 0 254 161 0 18 chr4 81924853 81924909 -102363753 + GA-rich Low_complexity Low_complexity 3 57 0 2421 65 7 0 chr4 81925197 81925487 -102363175 + AluY SINE Alu 1 292 -19 359 277 80 9 chr4 81926155 81926267 -102362395 + MIR3 SINE MIR 83 202 -6 220 338 14 0 chr4 81926477 81926551 -102362111 - MIR SINE MIR -106 156 82 459 92 0 0 chr4 81926556 81926621 -102362041 + (CTG)n Simple_repeat Simple_repeat 2 66 0 900 236 66 25 chr4 81926730 81926972 -102361690 - MIR SINE MIR -10 252 1 244 318 0 106 chr4 81927217 81927260 -102361402 - MER5A DNA MER1_type 0 189 143 1691 117 34 0 chr4 81927260 81927526 -102361136 + AluSq SINE Alu 39 313 0 244 318 0 106 chr4 81927526 81927633 -102361029 - MER5A DNA MER1_type -46 143 55 2290 89 0 3 chr4 81928364 81928657 -102360005 - AluSg SINE Alu -18 292 1 1778 174 67 9 chr4 81929296 81929624 -102359038 - MER7A DNA MER2_type -1 345 1 25 0 0 0 chr4 81929854 81929879 -102358783 + AT_rich Low_complexity Low_complexity 1 25 0 580 231 30 0 chr4 81930476 81930610 -102358052 + MER113 DNA MER1_type? 222 359 -162 230 346 82 19 chr4 81931061 81931220 -102357442 + L3b LINE CR1 1296 1464 -119 2100 137 76 15 chr4 81932587 81932930 -102355732 + THE1B LTR MaLR 1 364 0 11691 83 2 21 chr4 81932930 81934540 -102354122 + THE1B-int LTR MaLR 1 1580 0 2051 114 108 21 chr4 81934540 81934872 -102353790 + THE1B LTR MaLR 3 364 0 3026 207 58 39 chr4 81934878 81935176 -102353486 + L1ME1 LINE L1 4872 5163 -1003 1842 167 14 0 chr4 81935176 81935457 -102353205 + AluSx SINE Alu 6 290 -22 3026 207 58 39 chr4 81935457 81936125 -102352537 + L1ME1 LINE L1 5163 5872 -294 2182 103 7 3 chr4 81936125 81936417 -102352245 + AluSc SINE Alu 1 293 -16 3026 207 58 39 chr4 81936417 81936605 -102352057 + L1ME1 LINE L1 5872 6055 -111 905 206 131 5 chr4 81936605 81936804 -102351858 - MER58A DNA MER1_type 0 224 1 21 0 0 0 chr4 81936841 81936862 -102351800 + AT_rich Low_complexity Low_complexity 1 21 0 722 223 20 27 chr4 81936868 81937062 -102351600 - FRAM SINE Alu 0 192 1 313 141 84 0 chr4 81937071 81937142 -102351520 + L1ME1 LINE L1 6085 6161 -5 359 259 61 46 chr4 81937325 81937456 -102351206 - MIR SINE MIR -123 139 7 317 312 109 7 chr4 81938126 81938264 -102350398 + MIR SINE MIR 3 154 -108 651 377 4 4 chr4 81940038 81940282 -102348380 + MIR SINE MIR 18 261 -1 24 32 0 0 chr4 81940768 81940799 -102347863 + AT_rich Low_complexity Low_complexity 1 31 0 31 0 0 0 chr4 81941120 81941151 -102347511 + AT_rich Low_complexity Low_complexity 1 31 0 1542 199 14 0 chr4 81942218 81942499 -102346163 + AluJo SINE Alu 7 291 -21 36955 90 14 10 chr4 81943217 81949333 -102339329 + L1PA6 LINE L1 13 6154 0 198 388 71 16 chr4 81949961 81950144 -102338518 - MIR3 SINE MIR -6 202 10 477 284 103 34 chr4 81950374 81950578 -102338084 + L1ME4a LINE L1 5433 5650 -471 1730 124 131 3 chr4 81950612 81950894 -102337768 - MER1B DNA MER1_type 0 339 22 340 261 31 99 chr4 81950907 81951068 -102337594 + L1ME4a LINE L1 5706 5855 -266 446 294 124 10 chr4 81951195 81951396 -102337266 + MLT1L LTR MaLR 322 545 -70 1649 142 4 33 chr4 81952104 81952379 -102336283 + AluJb SINE Alu 1 267 -45 415 104 0 26 chr4 81952402 81952479 -102336183 + (AGGGGG)n Simple_repeat Simple_repeat 6 80 0 498 240 29 0 chr4 81952479 81952583 -102336079 + MER21B LTR ERV1 12 118 -745 533 284 88 29 chr4 81952590 81952829 -102335833 + L2 LINE L2 3059 3311 -2 6148 84 23 0 chr4 81954219 81955168 -102333494 + L1PA14 LINE L1 5190 6158 -3 2124 119 3 0 chr4 81955400 81955695 -102332967 + AluSq SINE Alu 1 296 -17 2205 112 0 0 chr4 81956674 81956961 -102331701 + AluSx SINE Alu 13 299 -13 893 226 38 24 chr4 81957779 81957991 -102330671 + MIR SINE MIR 4 218 -44 279 282 13 0 chr4 81958177 81958255 -102330407 + MER91A DNA MER1_type 3 81 -115 234 336 116 29 chr4 81958259 81958536 -102330126 + L2 LINE L2 2522 2822 -492 1003 184 0 0 chr4 81958543 81958706 -102329956 - FRAM SINE Alu -14 162 1 206 222 37 0 chr4 81958779 81958833 -102329829 + (TA)n Simple_repeat Simple_repeat 1 56 0 258 176 0 0 chr4 81958895 81958946 -102329716 + (CA)n Simple_repeat Simple_repeat 2 52 0 22 0 0 0 chr4 81958948 81958970 -102329692 + AT_rich Low_complexity Low_complexity 1 22 0 462 270 54 20 chr4 81959266 81959414 -102329248 + L2 LINE L2 3161 3313 0 202 364 101 38 chr4 81959427 81959845 -102328817 - L2 LINE L2 -1402 1912 1469 22 35 0 0 chr4 81960726 81960755 -102327907 + AT_rich Low_complexity Low_complexity 1 29 0 234 237 66 26 chr4 81962051 81962127 -102326535 - L1MC5 LINE L1 -44 7917 7839 545 125 0 0 chr4 81962850 81962930 -102325732 + AluJb SINE Alu 13 92 -220 1088 174 5 54 chr4 81963008 81963232 -102325430 + AluJb SINE Alu 94 306 -6 395 287 0 11 chr4 81964700 81964787 -102323875 - L2 LINE L2 -1 3271 3186 180 111 0 0 chr4 81964982 81965009 -102323653 + (TAGG)n Simple_repeat Simple_repeat 1 27 0 303 71 0 0 chr4 81965054 81965096 -102323566 + (TG)n Simple_repeat Simple_repeat 2 43 0 183 250 0 0 chr4 81965184 81965236 -102323426 + GA-rich Low_complexity Low_complexity 1 52 0 974 170 112 0 chr4 81965927 81966115 -102322547 - MER3 DNA MER1_type 0 209 1 24 0 0 0 chr4 81966379 81966403 -102322259 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr4 81967731 81967757 -102320905 + AT_rich Low_complexity Low_complexity 1 26 0 191 276 51 71 chr4 81967767 81967865 -102320797 - L3 LINE CR1 -27 1550 1455 354 362 81 27 chr4 81967867 81968052 -102320610 + MIR3 SINE MIR 5 199 -9 186 375 173 0 chr4 81968400 81968504 -102320158 + MIR3 SINE MIR 64 185 -23 2232 102 0 3 chr4 81968802 81969097 -102319565 - AluSc SINE Alu -15 294 1 2074 94 0 37 chr4 81969963 81970260 -102318402 - AluSp SINE Alu -27 286 1 1643 180 14 21 chr4 81970282 81970566 -102318096 - AluJo SINE Alu -30 282 1 23 0 0 0 chr4 81971207 81971230 -102317432 + AT_rich Low_complexity Low_complexity 1 23 0 273 320 90 0 chr4 81971674 81971774 -102316888 - MIR SINE MIR -118 144 36 1535 325 141 32 chr4 81974582 81974748 -102313914 + L2 LINE L2 1297 1444 -1870 2107 77 17 30 chr4 81974748 81975045 -102313617 - AluY SINE Alu -18 293 1 1535 325 141 32 chr4 81975045 81976092 -102312570 + L2 LINE L2 1444 2642 -672 192 152 0 0 chr4 81978451 81978484 -102310178 + GA-rich Low_complexity Low_complexity 2 34 0 2358 81 10 3 chr4 81979544 81979853 -102308809 - AluSq SINE Alu -2 311 1 347 208 119 83 chr4 81980012 81980180 -102308482 - MER112 DNA MER1_type -48 212 39 21 0 0 0 chr4 81980202 81980223 -102308439 + AT_rich Low_complexity Low_complexity 1 21 0 2013 112 41 14 chr4 81981058 81981353 -102307309 - AluSx SINE Alu -9 303 1 390 233 213 7 chr4 81981948 81982098 -102306564 - MIR SINE MIR -2 260 80 209 234 0 21 chr4 81982159 81982206 -102306456 - MIR SINE MIR -105 157 112 625 316 9 26 chr4 81982380 81982611 -102306051 + MIR SINE MIR 33 259 -3 1030 184 0 0 chr4 81982908 81983071 -102305591 - AluJb SINE Alu -14 298 136 190 235 0 0 chr4 81983553 81983587 -102305075 + MIR SINE MIR 113 146 -62 430 288 25 25 chr4 81983631 81983791 -102304871 - MER103 DNA DNA -3 163 4 180 156 0 0 chr4 81984706 81984738 -102303924 + MIR3 SINE MIR 175 206 -2 840 218 141 12 chr4 81985699 81985947 -102302715 + L1ME LINE L1 5360 5639 -523 400 333 116 78 chr4 81985972 81986230 -102302432 + L2 LINE L2 3001 3268 -4 887 272 151 41 chr4 81987635 81987785 -102300877 - L1MC4a LINE L1 -1758 6050 5918 1939 126 25 0 chr4 81987785 81988070 -102300592 - AluSx SINE Alu -19 293 2 887 272 151 41 chr4 81988070 81988408 -102300254 - L1MC4a LINE L1 -1890 5918 5508 1636 191 7 10 chr4 81988520 81988824 -102299838 - AluJo SINE Alu -9 303 1 1002 265 104 3 chr4 81988955 81989264 -102299398 - L2 LINE L2 -1607 1707 1368 251 282 36 73 chr4 81990018 81990128 -102298534 + L2 LINE L2 3162 3267 -5 1930 213 40 60 chr4 81990478 81990968 -102297694 + MLT2B1 LTR ERVL 1 481 -39 264 100 0 0 chr4 81990968 81991008 -102297654 + (CA)n Simple_repeat Simple_repeat 2 41 0 1930 213 40 60 chr4 81991008 81991048 -102297614 + MLT2B1 LTR ERVL 481 520 0 2309 97 6 3 chr4 81992193 81992504 -102296158 - AluSx SINE Alu 0 312 1 285 232 104 9 chr4 81992506 81992612 -102296050 - MIR SINE MIR -65 143 29 977 221 5 42 chr4 81992616 81992829 -102295833 - MER20 DNA MER1_type -13 206 2 246 81 0 0 chr4 81993098 81993135 -102295527 + (CAT)n Simple_repeat Simple_repeat 1 37 0 250 369 0 0 chr4 81993183 81993267 -102295395 + L2 LINE L2 3189 3272 0 467 43 29 0 chr4 81993734 81993803 -102294859 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 381 291 64 0 chr4 81993899 81994009 -102294653 + L2 LINE L2 3190 3306 -7 * 889 281 24 0 chr4 81993984 81994194 -102294468 - MIR SINE MIR 0 262 48 1024 185 0 5 chr4 81994553 81994737 -102293925 - MER5A DNA MER1_type -5 184 2 758 349 85 26 chr4 81994941 81995658 -102293004 - L2 LINE L2 -339 2975 2217 2323 88 0 0 chr4 81996528 81996822 -102291840 + AluSc SINE Alu 1 294 -15 363 280 109 100 chr4 81997517 81997846 -102290816 + MER102b DNA MER1_type 10 341 0 1427 91 11 0 chr4 81998068 81998277 -102290385 - AluSc SINE Alu 0 303 93 711 232 33 33 chr4 81999573 81999754 -102288908 + MIR SINE MIR 9 189 -73 302 248 129 0 chr4 82000270 82000371 -102288291 - L1ME LINE L1 -315 5806 5693 440 214 32 117 chr4 82000742 82000896 -102287766 + MIR SINE MIR 104 244 -18 22 35 0 0 chr4 82003563 82003592 -102285070 + AT_rich Low_complexity Low_complexity 1 29 0 354 313 125 21 chr4 82003983 82004175 -102284487 - MIR SINE MIR -48 214 3 33 56 0 0 chr4 82004331 82004385 -102284277 + AT_rich Low_complexity Low_complexity 1 54 0 4161 141 10 23 chr4 82004786 82004814 -102283848 - L1MB2 LINE L1 -33 6138 6111 2346 80 0 0 chr4 82004814 82005115 -102283547 - AluY SINE Alu -10 301 1 4161 141 10 23 chr4 82005115 82005795 -102282867 - L1MB2 LINE L1 -60 6111 5439 209 246 115 16 chr4 82005876 82005937 -102282725 + L2 LINE L2 3205 3271 -1 21 0 0 0 chr4 82007185 82007206 -102281456 + AT_rich Low_complexity Low_complexity 1 21 0 318 386 35 7 chr4 82007680 82007825 -102280837 + L1MC/D LINE L1 5555 5703 -2105 2111 122 3 0 chr4 82008094 82008389 -102280273 + AluSx SINE Alu 1 296 -16 222 402 34 29 chr4 82008578 82008787 -102279875 + L2 LINE L2 2827 3036 -236 1964 170 6 9 chr4 82008892 82009228 -102279434 + MER1B DNA MER1_type 3 337 0 185 306 122 0 chr4 82009285 82009334 -102279328 + L2 LINE L2 3205 3259 -13 21 0 0 0 chr4 82009754 82009775 -102278887 + AT_rich Low_complexity Low_complexity 1 21 0 1616 261 40 45 chr4 82011436 82011991 -102276671 - L2 LINE L2 -652 2662 2111 420 161 35 0 chr4 82012621 82012708 -102275954 - L1MA5 LINE L1 0 6300 6211 312 27 0 0 chr4 82012783 82012820 -102275842 + (TA)n Simple_repeat Simple_repeat 1 37 0 2222 102 0 34 chr4 82013196 82013519 -102275143 + AluSx SINE Alu 1 312 0 24 0 0 0 chr4 82013675 82013699 -102274963 + AT_rich Low_complexity Low_complexity 1 24 0 2449 161 14 77 chr4 82014978 82015487 -102273175 + LTR9 LTR ERV1 1 477 -135 199 0 65 0 chr4 82015676 82015707 -102272955 + (GA)n Simple_repeat Simple_repeat 2 34 0 634 151 58 36 chr4 82015707 82015846 -102272816 + LTR9 LTR ERV1 471 612 0 649 243 49 78 chr4 82015929 82016179 -102272483 + MIR SINE MIR 19 262 0 208 250 15 73 chr4 82017977 82018045 -102270617 + MER5B DNA MER1_type 93 156 -22 1109 242 66 50 chr4 82018475 82018964 -102269698 + MER39 LTR ERV1 1 707 0 763 151 8 16 chr4 82019083 82019209 -102269453 - FRAM SINE Alu -21 155 31 2211 133 0 0 chr4 82019479 82019787 -102268875 + AluSc SINE Alu 1 308 -1 22 0 0 0 chr4 82020097 82020119 -102268543 + AT_rich Low_complexity Low_complexity 1 22 0 893 250 68 3 chr4 82020812 82021104 -102267558 + L1ME3 LINE L1 5844 6154 -8 24 32 0 0 chr4 82021387 82021418 -102267244 + AT_rich Low_complexity Low_complexity 1 31 0 329 207 8 99 chr4 82022198 82022248 -102266414 + MER3 DNA MER1_type 45 98 -64 2204 110 0 46 chr4 82022248 82022575 -102266087 - AluSx SINE Alu 0 312 1 329 207 8 99 chr4 82022575 82022645 -102266017 + MER3 DNA MER1_type 98 154 -55 1040 203 111 3 chr4 82022653 82023003 -102265659 + MER3 DNA MER1_type 2236 2623 0 382 248 144 36 chr4 82023316 82023538 -102265124 - L1MEd LINE L1 -4884 1235 990 3149 250 68 26 chr4 82023578 82024740 -102263922 + L1M1 LINE L1 16 1893 -5672 12504 83 14 1 chr4 82024749 82026531 -102262131 + L1P LINE L1 11 1814 -4332 616 80 34 0 chr4 82076531 82076619 -102212043 + AluY SINE Alu 205 295 -16 328 309 168 0 chr4 82076619 82076768 -102211894 + MIR SINE MIR 89 262 0 1296 140 12 100 chr4 82076829 82077019 -102211643 - AluJb SINE Alu -7 305 141 2296 95 3 7 chr4 82077019 82077315 -102211347 - AluSp SINE Alu -18 295 1 1296 140 12 100 chr4 82077315 82077374 -102211288 - AluJb SINE Alu -171 141 78 1086 113 0 48 chr4 82077639 82077807 -102210855 + AluY SINE Alu 145 304 -7 836 185 63 69 chr4 82079186 82079506 -102209156 + MSTD LTR MaLR 20 385 -11 2310 122 0 0 chr4 82079506 82079818 -102208844 + AluSx SINE Alu 1 312 0 1927 180 3 0 chr4 82079859 82080165 -102208497 - AluJb SINE Alu -5 307 1 357 161 103 35 chr4 82080281 82080368 -102208294 + L1ME LINE L1 5520 5612 -509 1870 95 20 4 chr4 82080422 82080675 -102207987 - AluSc SINE Alu -39 270 14 1544 172 30 8 chr4 82080778 82081045 -102207617 + AluJo SINE Alu 31 303 -9 2337 203 2 0 chr4 82081047 82081475 -102207187 - MSTD-int LTR MaLR -1305 430 2 1932 196 14 19 chr4 82081478 82081845 -102206817 - MSTD LTR MaLR 0 396 32 323 98 0 0 chr4 82081845 82081886 -102206776 + Alu SINE Alu 1 41 -261 2049 104 45 7 chr4 82081889 82082177 -102206485 + AluSp SINE Alu 1 299 -14 259 182 0 0 chr4 82082177 82082221 -102206441 - MSTD LTR MaLR -352 44 1 685 241 68 40 chr4 82082238 82082487 -102206175 + ERVL LTR ERVL 5170 5425 -339 22 0 0 0 chr4 82082626 82082648 -102206014 + AT_rich Low_complexity Low_complexity 1 22 0 2000 125 9 22 chr4 82082648 82082968 -102205694 - L1MB3 LINE L1 -2 6181 5866 1236 215 47 6 chr4 82082973 82083317 -102205345 - LTR37A LTR ERV1 -20 406 49 654 231 38 66 chr4 82083416 82083711 -102204951 + LTR41 LTR ERVL 1 290 -505 326 239 43 104 chr4 82083780 82083943 -102204719 + LTR41 LTR ERVL 504 656 -117 842 149 0 8 chr4 82083945 82084079 -102204583 - FLAM_A SINE Alu 0 133 1 962 206 0 11 chr4 82084083 82084258 -102204404 - AluJb SINE Alu -11 301 129 2191 114 10 3 chr4 82084413 82084721 -102203941 + AluSx SINE Alu 1 310 -2 972 153 138 41 chr4 82084928 82085124 -102203538 + MER20 DNA MER1_type 1 215 -4 255 268 14 0 chr4 82085131 82085202 -102203460 - L1MC5 LINE L1 -590 7371 7300 400 147 82 50 chr4 82085225 82085355 -102203307 + L1ME3A LINE L1 6030 6162 0 195 42 0 0 chr4 82088119 82088143 -102200519 + (T)n Simple_repeat Simple_repeat 1 24 0 2198 58 7 18 chr4 82088714 82088990 -102199672 + AluY SINE Alu 35 307 -4 2556 92 8 24 chr4 82089114 82089484 -102199178 - THE1B LTR MaLR 0 364 1 400 289 82 16 chr4 82092711 82092905 -102195757 - MIR SINE MIR -6 256 50 1047 148 35 0 chr4 82093012 82093181 -102195481 + AluSg/x SINE Alu 129 303 -7 4270 187 65 63 chr4 82093216 82093440 -102195222 - Tigger6a DNA MER2_type -518 1079 857 2590 69 0 0 chr4 82093440 82093746 -102194916 - AluY SINE Alu -4 307 2 4270 187 65 63 chr4 82093746 82093764 -102194898 - Tigger6a DNA MER2_type -740 857 841 1755 128 50 75 chr4 82093764 82093945 -102194717 - AluSx SINE Alu 0 312 141 2173 109 6 16 chr4 82093945 82094257 -102194405 - AluSp SINE Alu -4 309 1 1755 128 50 75 chr4 82094257 82094395 -102194267 - AluSx SINE Alu -171 141 1 4270 187 65 63 chr4 82094395 82094418 -102194244 - Tigger6a DNA MER2_type -756 841 820 2040 158 19 11 chr4 82094418 82094627 -102194035 - MLT1A1 LTR MaLR 0 365 150 2122 113 43 10 chr4 82094627 82094927 -102193735 - AluSx SINE Alu -2 310 1 2040 158 19 11 chr4 82094927 82095079 -102193583 - MLT1A1 LTR MaLR -215 150 1 4270 187 65 63 chr4 82095079 82095833 -102192829 - Tigger6a DNA MER2_type -777 820 53 1945 154 3 7 chr4 82095833 82096138 -102192524 + AluSx SINE Alu 1 304 -8 4270 187 65 63 chr4 82096138 82096191 -102192471 - Tigger6a DNA MER2_type -1544 53 2 2095 93 0 0 chr4 82096227 82096497 -102192165 + AluY SINE Alu 38 307 -4 356 149 0 17 chr4 82096554 82096626 -102192036 - Alu SINE Alu -250 53 1 1258 244 63 89 chr4 82096768 82096996 -102191666 - L1MC4a LINE L1 -1799 6009 5777 722 219 88 12 chr4 82096996 82097156 -102191506 - FAM SINE Alu -3 172 1 1258 244 63 89 chr4 82097156 82097291 -102191371 - L1MC4a LINE L1 -2031 5777 5640 2152 122 0 0 chr4 82097291 82097577 -102191085 + AluSx SINE Alu 1 286 -26 1258 244 63 89 chr4 82097577 82097876 -102190786 - L1MC4a LINE L1 -2168 5640 5363 2223 95 7 3 chr4 82098105 82098399 -102190263 + AluSx SINE Alu 1 295 -17 433 132 0 40 chr4 82098891 82098967 -102189695 + AluJ/FRAM SINE Alu 233 305 -7 2477 92 0 0 chr4 82099020 82099324 -102189338 + AluSg SINE Alu 1 304 -6 199 271 165 0 chr4 82099528 82099613 -102189049 + L2 LINE L2 3169 3267 -5 314 258 55 70 chr4 82099716 82099844 -102188818 - L2 LINE L2 -8 3305 3180 1680 174 8 0 chr4 82100021 82100286 -102188376 + Tigger7 DNA MER2_type 1 267 -466 465 170 30 50 chr4 82100284 82100384 -102188278 + Tigger7 DNA MER2_type 2389 2486 -1 * 794 234 40 22 chr4 82100496 82100723 -102187939 - MIR SINE MIR -4 258 28 2082 131 46 3 chr4 82100724 82101053 -102187609 - L1PA15 LINE L1 -1 6164 5822 331 194 42 0 chr4 82101159 82101231 -102187431 + L1MC/D LINE L1 5735 5809 -1999 1859 139 13 36 chr4 82101252 82101554 -102187108 + AluJb SINE Alu 6 300 -12 291 305 55 23 chr4 82102507 82102635 -102186027 - MIR SINE MIR -67 195 64 189 262 0 0 chr4 82103365 82103407 -102185255 + MIR SINE MIR 220 261 -1 1869 152 10 0 chr4 82104128 82104425 -102184237 + AluSx SINE Alu 7 306 -6 4050 100 33 7 chr4 82104606 82105218 -102183444 + L1PB3 LINE L1 5527 6154 0 32 0 0 0 chr4 82105218 82105250 -102183412 + AT_rich Low_complexity Low_complexity 1 32 0 2122 130 3 0 chr4 82105250 82105551 -102183111 + AluSq SINE Alu 1 302 -11 484 206 31 0 chr4 82106187 82106284 -102182378 - FRAM SINE Alu -21 155 56 1578 178 27 7 chr4 82106756 82107049 -102181613 + AluJb SINE Alu 1 299 -13 2018 211 73 33 chr4 82107134 82107680 -102180982 + L1ME1 LINE L1 5594 6161 -5 1493 168 47 57 chr4 82107775 82107900 -102180762 + AluJb SINE Alu 9 134 -178 7909 22 0 0 chr4 82107900 82109276 -102179386 + L1PA4 LINE L1 4780 6155 0 1493 168 47 57 chr4 82109276 82109448 -102179214 + AluJb SINE Alu 134 303 -9 922 146 6 32 chr4 82109486 82109644 -102179018 - FRAM SINE Alu -30 146 1 413 309 149 37 chr4 82109654 82110091 -102178571 - L2 LINE L2 0 3313 2828 509 39 0 0 chr4 82110123 82110226 -102178436 + L1P LINE L1 730 960 -5186 579 80 11 11 chr4 82110326 82110414 -102178248 - AluSg SINE Alu -221 89 2 213 271 60 60 chr4 82110457 82110590 -102178072 + MIR SINE MIR 63 195 -67 383 279 76 19 chr4 82110628 82110786 -102177876 - MIR SINE MIR -74 188 22 180 0 0 0 chr4 82112404 82112424 -102176238 + (T)n Simple_repeat Simple_repeat 1 20 0 210 309 103 32 chr4 82112473 82112599 -102176063 - MIR3 SINE MIR -65 143 9 244 314 116 16 chr4 82112810 82112931 -102175731 + MIR SINE MIR 108 240 -22 356 0 23 0 chr4 82113198 82113242 -102175420 + (TTA)n Simple_repeat Simple_repeat 2 46 0 542 159 21 252 chr4 82113363 82113537 -102175125 + MIR SINE MIR 4 217 -45 1343 184 112 4 chr4 82113537 82113804 -102174858 - AluJb SINE Alu -5 297 2 1143 199 84 45 chr4 82113810 82114096 -102174566 - AluJb SINE Alu -5 297 1 542 159 21 252 chr4 82114096 82114247 -102174415 + MIR SINE MIR 223 259 -3 250 275 0 0 chr4 82114280 82114349 -102174313 - L1ME LINE L1 -365 5799 5731 2171 100 13 17 chr4 82114349 82114650 -102174012 - AluSq SINE Alu -13 300 1 237 143 0 0 chr4 82115385 82115427 -102173235 + L2 LINE L2 3272 3313 0 7511 38 16 0 chr4 82116449 82117443 -102171219 - L1PA5 LINE L1 -7 6147 5150 13401 30 3 1 chr4 82117442 82119014 -102169648 + L1PA5 LINE L1 3576 5151 -995 1805 180 3 3 chr4 82119112 82119417 -102169245 + AluJo SINE Alu 1 305 -7 1701 136 48 4 chr4 82119720 82119971 -102168691 - AluSx SINE Alu -50 262 1 548 250 42 18 chr4 82120009 82120177 -102168485 + MIR SINE MIR 2 173 -89 3958 141 30 12 chr4 82120707 82121366 -102167296 - LTR51 LTR ERV1 0 671 1 2299 95 0 13 chr4 82121739 82122043 -102166619 + AluSq SINE Alu 1 300 -13 25 0 0 0 chr4 82122092 82122117 -102166545 + AT_rich Low_complexity Low_complexity 1 25 0 650 211 97 46 chr4 82122120 82122295 -102166367 - AluJo SINE Alu -22 290 107 1397 242 120 14 chr4 82122387 82122667 -102165995 - L1M4c LINE L1 -4206 2178 1929 2079 131 31 0 chr4 82122667 82122957 -102165705 - AluSx SINE Alu -13 299 1 1397 242 120 14 chr4 82122957 82123251 -102165411 - L1M4c LINE L1 -4455 1929 1543 2693 214 42 72 chr4 82123431 82123472 -102165190 - L1M4c LINE L1 -4516 1787 1746 2034 156 0 9 chr4 82123472 82123787 -102164875 + AluJo SINE Alu 1 312 0 2693 214 42 72 chr4 82123787 82124668 -102163994 - L1M4c LINE L1 -4557 1746 800 650 296 75 58 chr4 82124820 82125220 -102163442 - L1M3de LINE L1 -5215 676 1 290 227 34 136 chr4 82125318 82125494 -102163168 - MER102b DNA MER1_type -39 302 145 678 227 10 67 chr4 82125563 82125757 -102162905 - L1MC5 LINE L1 -48 7913 7731 204 341 34 0 chr4 82126744 82126832 -102161830 + MIR SINE MIR 16 106 -102 1873 151 0 36 chr4 82127524 82127683 -102160979 - AluJo SINE Alu -19 293 149 2097 134 0 3 chr4 82127683 82127975 -102160687 - AluSx SINE Alu -19 293 3 1873 151 0 36 chr4 82127975 82128119 -102160543 - AluJo SINE Alu -163 149 1 2643 152 14 0 chr4 82128271 82128693 -102159969 - MSTA LTR MaLR 0 428 1 1993 137 18 0 chr4 82128715 82128993 -102159669 - AluSx SINE Alu -29 283 1 471 285 65 68 chr4 82129007 82129341 -102159321 - HAL1 LINE L1 -891 1616 1282 2358 102 0 6 chr4 82129341 82129655 -102159007 - AluSx SINE Alu 0 312 1 471 285 65 68 chr4 82129655 82129702 -102158960 - HAL1 LINE L1 -1225 1282 1236 2810 132 36 11 chr4 82129732 82130178 -102158484 - LTR32 LTR ERVL 0 471 15 542 96 0 0 chr4 82130158 82130231 -102158431 - LTR32 LTR ERVL -383 88 16 * 499 135 0 0 chr4 82130212 82130286 -102158376 - LTR32 LTR ERVL -383 88 15 * 1092 182 17 0 chr4 82130404 82130580 -102158082 + MER58A DNA MER1_type 44 222 -2 509 170 140 10 chr4 82130713 82130813 -102157849 + FLAM_C SINE Alu 2 114 -29 231 36 0 0 chr4 82130816 82130844 -102157818 + (TTTTTG)n Simple_repeat Simple_repeat 5 32 0 2268 83 10 23 chr4 82130989 82131291 -102157371 + AluSq SINE Alu 1 298 -15 216 314 95 0 chr4 82131466 82131571 -102157091 + MIR SINE MIR 1 115 -147 689 230 43 101 chr4 82131760 82132017 -102156645 - LTR33A LTR ERVL -255 268 27 180 0 0 0 chr4 82132018 82132038 -102156624 + (ACTAG)n Simple_repeat Simple_repeat 5 24 0 216 231 26 77 chr4 82132341 82132419 -102156243 + CT-rich Low_complexity Low_complexity 2 75 0 1418 216 68 86 chr4 82132575 82133123 -102155539 - MLT1E LTR MaLR -1 592 1 197 396 9 0 chr4 82133400 82133511 -102155151 - L2 LINE L2 -955 2359 2248 241 349 97 31 chr4 82133827 82134022 -102154640 + MIR SINE MIR 9 216 -46 195 318 156 28 chr4 82134505 82134684 -102153978 + L2 LINE L2 2661 2862 -452 1615 203 3 0 chr4 82134874 82135174 -102153488 - AluJo SINE Alu -11 301 1 2633 62 0 0 chr4 82135231 82135535 -102153127 + AluY SINE Alu 2 305 -6 2325 87 3 3 chr4 82135543 82135842 -102152820 + AluSp SINE Alu 3 301 -12 208 258 155 21 chr4 82136743 82136840 -102151822 + L2 LINE L2 3160 3269 -44 491 286 119 31 chr4 82137874 82138101 -102150561 + MIR SINE MIR 15 261 -1 34 0 0 0 chr4 82138597 82138631 -102150031 + AT_rich Low_complexity Low_complexity 1 34 0 1934 249 68 68 chr4 82138657 82138826 -102149836 - HAL1 LINE L1 -105 2402 2234 2370 105 0 0 chr4 82138826 82139131 -102149531 - AluSx SINE Alu -7 305 1 1934 249 68 68 chr4 82139131 82139251 -102149411 - HAL1 LINE L1 -273 2234 2115 1359 157 54 135 chr4 82139251 82139658 -102149004 - MLT1A2 LTR MaLR 0 374 1 1934 249 68 68 chr4 82139658 82140242 -102148420 - HAL1 LINE L1 -392 2115 1525 2269 123 0 0 chr4 82140242 82140552 -102148110 - AluSx SINE Alu -2 310 1 1934 249 68 68 chr4 82140552 82140703 -102147959 - HAL1 LINE L1 -981 1526 1376 664 284 90 9 chr4 82140709 82140931 -102147731 + MIR SINE MIR 2 241 -21 835 245 126 43 chr4 82140960 82141429 -102147233 - HAL1 LINE L1 -1136 1371 864 232 342 95 22 chr4 82141545 82141767 -102146895 - L2 LINE L2 -818 2496 2259 2219 106 0 3 chr4 82141944 82142237 -102146425 - AluSg SINE Alu -18 292 1 1122 80 0 7 chr4 82142237 82142375 -102146287 - AluSq/x SINE Alu -175 137 1 1838 174 3 19 chr4 82142507 82142824 -102145838 - AluSx SINE Alu 0 312 1 837 205 0 0 chr4 82144121 82144272 -102144390 - FRAM SINE Alu -15 161 11 844 276 105 21 chr4 82144318 82144698 -102143964 + L2 LINE L2 2395 2806 -508 24 0 0 0 chr4 82144702 82144726 -102143936 + AT_rich Low_complexity Low_complexity 1 24 0 34914 32 4 0 chr4 82144726 82149671 -102138991 - L1PA3 LINE L1 -4 6151 1198 1788 164 0 26 chr4 82149896 82150061 -102138601 - AluJo SINE Alu -15 297 129 207 0 0 0 chr4 82150061 82150084 -102138578 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1989 122 14 35 chr4 82150085 82150373 -102138289 - AluSx SINE Alu -30 282 1 1788 164 0 26 chr4 82150373 82150510 -102138152 - AluJo SINE Alu -182 130 1 630 164 91 0 chr4 82150510 82150620 -102138042 - MLT1B LTR MaLR -270 120 1 588 244 0 0 chr4 82150732 82150851 -102137811 - FLAM_A SINE Alu -14 119 1 1112 71 0 0 chr4 82150858 82150999 -102137663 - AluSc SINE Alu -5 304 164 740 226 38 45 chr4 82150999 82151287 -102137375 + pTR5 LTR ERV1 743 1028 -1410 3047 134 11 89 chr4 82151372 82152054 -102136608 + LTR12 LTR ERV1 1 2293 -145 1217 92 0 35 chr4 82152066 82152239 -102136423 - AluSc SINE Alu -142 167 1 324 282 64 48 chr4 82152332 82152520 -102136142 - L1ME3A LINE L1 -15 6155 5965 428 238 5 184 chr4 82152578 82152856 -102135806 - L2 LINE L2 -73 3240 2914 1236 190 89 124 chr4 82152856 82153017 -102135645 - MLT1C LTR MaLR 0 467 302 2058 131 20 13 chr4 82153017 82153323 -102135339 - AluJo SINE Alu -2 310 3 1236 190 89 124 chr4 82153323 82153645 -102135017 - MLT1C LTR MaLR -165 302 1 428 238 5 184 chr4 82153645 82153753 -102134909 - L2 LINE L2 -399 2914 2788 2349 66 0 14 chr4 82153753 82154073 -102134589 + AluY SINE Alu 1 316 0 428 238 5 184 chr4 82154073 82154182 -102134480 - L2 LINE L2 -525 2788 2759 2166 125 10 0 chr4 82154182 82154478 -102134184 + AluSx SINE Alu 1 299 -13 428 238 5 184 chr4 82154478 82154562 -102134100 - L2 LINE L2 -554 2759 2662 251 267 0 58 chr4 82154608 82154694 -102133968 - MIR SINE MIR -176 86 6 1163 141 19 28 chr4 82154893 82155106 -102133556 - MLT1B LTR MaLR -179 211 1 2265 99 10 0 chr4 82155132 82155425 -102133237 + AluSx SINE Alu 2 297 -15 1429 199 10 36 chr4 82155621 82155922 -102132740 - AluJo SINE Alu -18 294 2 32 26 0 0 chr4 82156040 82156079 -102132583 + AT_rich Low_complexity Low_complexity 1 39 0 814 174 39 39 chr4 82156364 82156519 -102132143 - FRAM SINE Alu -11 155 1 916 185 0 0 chr4 82156626 82156783 -102131879 - FAM SINE Alu -10 175 19 25 31 0 0 chr4 82156899 82156931 -102131731 + AT_rich Low_complexity Low_complexity 1 32 0 752 129 9 0 chr4 82156931 82157047 -102131615 - AluJb SINE Alu -194 118 2 1994 152 0 0 chr4 82157058 82157354 -102131308 - AluSx SINE Alu -16 296 1 352 213 13 13 chr4 82157990 82158065 -102130597 + MIR SINE MIR 31 105 -157 2047 155 0 0 chr4 82158088 82158385 -102130277 - AluJb SINE Alu -15 297 1 205 321 84 59 chr4 82158529 82158816 -102129846 - L2 LINE L2 -847 2467 2174 297 295 0 0 chr4 82159661 82159739 -102128923 + (CAGAGA)n Simple_repeat Simple_repeat 6 83 0 1921 201 97 48 chr4 82160073 82160135 -102128527 - MLT1F1 LTR MaLR -7 560 503 1891 142 7 20 chr4 82160135 82160430 -102128232 - AluJb SINE Alu -17 295 5 1921 201 97 48 chr4 82160430 82160809 -102127853 - MLT1F1 LTR MaLR -64 503 97 183 156 0 0 chr4 82161126 82161158 -102127504 + (TA)n Simple_repeat Simple_repeat 1 32 0 2440 43 0 3 chr4 82161267 82161574 -102127088 + AluY SINE Alu 1 306 0 1136 139 89 0 chr4 82161674 82161854 -102126808 + MSTC LTR MaLR 233 428 0 2420 88 0 0 chr4 82161887 82162181 -102126481 + AluY SINE Alu 1 294 -17 2207 103 40 3 chr4 82162233 82162533 -102126129 + AluSp SINE Alu 1 311 -2 284 322 168 5 chr4 82162562 82162764 -102125898 + L3 LINE CR1 1307 1541 -36 182 321 44 22 chr4 82163448 82163585 -102125077 + MER5A DNA MER1_type 1 140 -49 1958 155 7 10 chr4 82163585 82163895 -102124767 + AluSx SINE Alu 1 309 -3 2249 118 0 13 chr4 82163897 82164210 -102124452 + AluSx SINE Alu 1 309 -3 248 276 72 92 chr4 82164279 82164431 -102124231 + MER5A DNA MER1_type 7 155 -34 963 73 61 67 chr4 82164492 82164657 -102124005 + L1PA12 LINE L1 6005 6168 0 1926 123 68 3 chr4 82164834 82165127 -102123535 + AluSx SINE Alu 1 312 0 465 19 0 0 chr4 82165304 82165358 -102123304 + (CA)n Simple_repeat Simple_repeat 2 55 0 281 186 14 0 chr4 82165739 82165809 -102122853 + CT-rich Low_complexity Low_complexity 1 71 0 216 304 76 0 chr4 82165816 82165895 -102122767 - L2 LINE L2 -2 3311 3227 394 225 162 21 chr4 82165906 82166048 -102122614 - MLT2E LTR ERVL -83 545 384 228 282 39 29 chr4 82166062 82166165 -102122497 - MLT2E LTR ERVL -350 278 175 557 201 14 58 chr4 82166225 82166364 -102122298 - MLT2E LTR ERVL -485 143 11 216 0 0 0 chr4 82167033 82167057 -102121605 + (A)n Simple_repeat Simple_repeat 1 24 0 1755 116 109 14 chr4 82167299 82167574 -102121088 + AluSx SINE Alu 1 301 -11 2140 101 0 60 chr4 82167923 82168241 -102120421 + AluSc SINE Alu 1 299 -10 195 69 0 0 chr4 82168803 82168832 -102119830 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 1562 142 25 115 chr4 82168833 82169009 -102119653 - AluJb SINE Alu -18 294 159 2241 88 0 49 chr4 82169009 82169314 -102119348 - AluSp SINE Alu -23 290 1 1562 142 25 115 chr4 82169314 82169460 -102119202 - AluJb SINE Alu -153 159 1 306 250 69 56 chr4 82169473 82169617 -102119045 - MIR SINE MIR -105 157 12 495 282 13 13 chr4 82169734 82169883 -102118779 - L1MC4 LINE L1 -1242 6800 6652 379 234 89 33 chr4 82169899 82170063 -102118599 - L1MC4 LINE L1 -1191 6617 6502 1108 45 30 0 chr4 82170965 82171098 -102117564 - AluY SINE Alu -9 302 166 2402 87 0 7 chr4 82171531 82171840 -102116822 - AluSg SINE Alu -3 307 1 358 189 31 71 chr4 82172058 82172185 -102116477 - L1MD3 LINE L1 -1434 6561 6440 1894 199 29 19 chr4 82172518 82172641 -102116021 + MLT1C LTR MaLR 53 173 -294 2334 103 3 13 chr4 82172641 82172953 -102115709 + AluSp SINE Alu 1 309 -4 1894 199 29 19 chr4 82172953 82173240 -102115422 + MLT1C LTR MaLR 173 467 0 2617 274 49 27 chr4 82173243 82174061 -102114601 + ERVL LTR ERVL 3833 4668 -1096 387 159 14 0 chr4 82174061 82174130 -102114532 - MLT1A1 LTR MaLR 0 365 296 1572 196 7 10 chr4 82174137 82174433 -102114229 + AluJo SINE Alu 1 295 -17 706 200 17 8 chr4 82174442 82174804 -102113858 + GA-rich Low_complexity Low_complexity 1 365 0 1345 213 66 36 chr4 82174807 82175141 -102113521 - MER7A DNA MER2_type -1 345 4 * 1360 167 19 33 chr4 82175141 82175406 -102113256 - MLT1A1 LTR MaLR -104 261 1 1356 307 18 18 chr4 82175451 82175897 -102112765 + ERVL LTR ERVL 4712 5157 -607 2181 147 48 8 chr4 82175897 82175934 -102112728 - MLT2B3 LTR ERVL 0 554 520 308 24 24 0 chr4 82175934 82175975 -102112687 + (TG)n Simple_repeat Simple_repeat 1 42 0 2181 147 48 8 chr4 82175975 82176259 -102112403 - MLT2B3 LTR ERVL -34 520 215 270 0 0 0 chr4 82176259 82176289 -102112373 + (GA)n Simple_repeat Simple_repeat 1 30 0 2181 147 48 8 chr4 82176289 82176320 -102112342 - MLT2B3 LTR ERVL -339 215 187 535 159 32 79 chr4 82176320 82176446 -102112216 - MLT-int LTR MaLR -1078 657 538 814 196 0 6 chr4 82176455 82176618 -102112044 - AluSg/x SINE Alu -5 305 144 22 35 0 0 chr4 82176978 82177007 -102111655 + GC_rich Low_complexity Low_complexity 1 29 0 1688 174 3 13 chr4 82179285 82179476 -102109186 - AluJo SINE Alu -17 295 107 198 0 0 0 chr4 82179476 82179498 -102109164 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 1688 174 3 13 chr4 82179498 82179604 -102109058 - AluJo SINE Alu -205 107 1 2246 128 0 0 chr4 82179866 82180178 -102108484 + AluSx SINE Alu 1 312 0 189 295 9 86 chr4 82180755 82180860 -102107802 - L2 LINE L2 -22 3291 3195 219 261 84 25 chr4 82180867 82180986 -102107676 - MIR SINE MIR -41 221 96 720 227 49 27 chr4 82181429 82181614 -102107048 - MER5A DNA MER1_type 0 189 1 429 214 41 0 chr4 82181616 82181714 -102106948 + MIR SINE MIR 4 105 -157 732 174 0 8 chr4 82181738 82181859 -102106803 + FLAM_C SINE Alu 4 123 -10 868 221 137 49 chr4 82181871 82182111 -102106551 - LTR40b LTR ERVL -9 453 179 2155 112 11 3 chr4 82182111 82182398 -102106264 - AluSx SINE Alu -23 289 1 868 221 137 49 chr4 82182398 82182464 -102106198 - LTR40b LTR ERVL -283 179 120 2112 121 0 20 chr4 82182504 82182801 -102105861 + AluSx SINE Alu 1 291 -21 645 199 38 90 chr4 82182806 82182927 -102105735 - LTR40a LTR ERVL -319 200 93 1483 191 10 44 chr4 82182927 82183074 -102105588 + AluJo SINE Alu 1 136 -176 1979 109 25 4 chr4 82183074 82183389 -102105273 + AluSx SINE Alu 1 321 0 1483 191 10 44 chr4 82183389 82183538 -102105124 + AluJo SINE Alu 136 288 -24 645 199 38 90 chr4 82183538 82183627 -102105035 - LTR40a LTR ERVL -426 93 1 225 318 65 0 chr4 82183678 82183785 -102104877 + MIR SINE MIR 149 262 0 288 283 167 32 chr4 82184425 82184676 -102103986 + MLT1J LTR MaLR 227 511 0 244 284 39 10 chr4 82184723 82184825 -102103837 - L2 LINE L2 -225 3088 2984 1435 121 12 96 chr4 82185321 82185379 -102103283 + AluJb SINE Alu 78 139 -173 2324 81 7 7 chr4 82185379 82185675 -102102987 + AluSp SINE Alu 1 296 -17 1435 121 12 96 chr4 82185675 82185865 -102102797 + AluJb SINE Alu 139 305 -7 289 278 173 46 chr4 82185933 82186075 -102102587 - MIR SINE MIR -7 255 86 1766 97 112 8 chr4 82186075 82186342 -102102320 - AluY SINE Alu -16 295 1 289 278 173 46 chr4 82186342 82186372 -102102290 - MIR SINE MIR -176 86 61 191 303 117 35 chr4 82186791 82186936 -102101726 - MIR SINE MIR -27 235 79 1011 200 0 0 chr4 82187015 82187190 -102101472 - AluJb SINE Alu -1 311 137 1738 153 44 7 chr4 82187199 82187493 -102101169 - AluJo SINE Alu -7 305 1 287 276 231 25 chr4 82187833 82188062 -102100600 + L2 LINE L2 2958 3259 -54 1214 164 40 121 chr4 82188062 82188385 -102100277 - AluJo SINE Alu -15 297 1 287 276 231 25 chr4 82188385 82188441 -102100221 + L2 LINE L2 3259 3302 -11 231 219 58 117 chr4 82189775 82189912 -102098750 + MIR SINE MIR 112 240 -22 21 0 0 0 chr4 82190862 82190883 -102097779 + AT_rich Low_complexity Low_complexity 1 21 0 949 115 15 0 chr4 82190883 82191013 -102097649 - AluSx SINE Alu -18 291 160 697 92 0 0 chr4 82191013 82191111 -102097551 - AluSx SINE Alu -209 104 7 205 164 27 14 chr4 82191184 82191257 -102097405 + T-rich Low_complexity Low_complexity 2 75 0 1998 114 32 0 chr4 82191891 82192172 -102096490 - AluSq SINE Alu -23 290 1 2368 83 23 0 chr4 82193314 82193616 -102095046 - AluSc SINE Alu 0 309 1 564 46 0 287 chr4 82194204 82194378 -102094284 + L1PA8 LINE L1 6048 6171 -1 1706 95 24 139 chr4 82194390 82194727 -102093935 - AluSg SINE Alu -11 299 2 636 244 122 43 chr4 82195351 82195412 -102093250 - L1ME3A LINE L1 -5 6165 6110 2326 80 36 7 chr4 82195412 82195713 -102092949 - AluSq SINE Alu -3 310 1 636 244 122 43 chr4 82195713 82195905 -102092757 - L1ME3A LINE L1 -60 6110 5892 1092 135 140 5 chr4 82195935 82196142 -102092520 - Tigger2 DNA MER2_type -1 2717 2483 1391 117 62 89 chr4 82196147 82196404 -102092258 + AluJb SINE Alu 6 255 -57 1855 179 122 5 chr4 82197236 82197316 -102091346 - L1MB8 LINE L1 -6 6172 6093 879 278 191 2 chr4 82197316 82197730 -102090932 - L1MD1 LINE L1 -152 6090 5599 22 0 0 0 chr4 82197852 82197874 -102090788 + AT_rich Low_complexity Low_complexity 1 22 0 2312 107 3 0 chr4 82198329 82198629 -102090033 - AluSx SINE Alu -11 301 1 305 279 117 7 chr4 82198697 82198851 -102089811 - L1MC5 LINE L1 -167 7794 7624 2115 140 0 7 chr4 82199301 82199609 -102089053 + AluSx SINE Alu 1 306 -6 221 289 0 103 chr4 82200107 82200204 -102088458 + L2 LINE L2 2945 3031 -241 1581 176 3 73 chr4 82200204 82200534 -102088128 - AluJb SINE Alu -3 309 3 2088 122 27 3 chr4 82200538 82200833 -102087829 - AluSc SINE Alu -7 302 1 2378 84 7 0 chr4 82200854 82201152 -102087510 - AluSp SINE Alu -13 300 1 347 198 30 50 chr4 82201158 82201259 -102087403 + LTR41 LTR ERVL 669 767 -6 195 129 0 0 chr4 82202468 82202499 -102086163 + (T)n Simple_repeat Simple_repeat 1 31 0 319 321 153 52 chr4 82203595 82204547 -102084115 - L2 LINE L2 -217 3055 1959 2282 106 0 3 chr4 82205617 82205919 -102082743 + AluY SINE Alu 3 303 -8 2397 70 0 0 chr4 82206017 82206316 -102082346 + AluY SINE Alu 1 299 -12 27 62 0 0 chr4 82206497 82206545 -102082117 + AT_rich Low_complexity Low_complexity 1 48 0 711 183 0 36 chr4 82206625 82206762 -102081900 + FLAM_C SINE Alu 2 133 -10 774 282 75 19 chr4 82206887 82207521 -102081141 - L2 LINE L2 -5 3308 2642 204 370 72 36 chr4 82208014 82208263 -102080399 - L2 LINE L2 -9 3263 3006 1790 171 20 3 chr4 82208274 82208579 -102080083 + AluJb SINE Alu 2 311 -1 970 202 92 25 chr4 82208746 82208956 -102079706 + MER33 DNA MER1_type 1 219 -2366 1893 166 0 13 chr4 82208956 82209258 -102079404 - AluSx SINE Alu -14 298 1 970 202 92 25 chr4 82209258 82209362 -102079300 + MER33 DNA MER1_type 219 315 -9 369 195 9 35 chr4 82210125 82210238 -102078424 + CT-rich Low_complexity Low_complexity 3 112 0 1987 119 7 16 chr4 82210565 82210868 -102077794 - AluSq SINE Alu -13 300 1 1005 172 0 0 chr4 82211665 82211828 -102076834 - AluJb SINE Alu -8 304 142 501 47 0 0 chr4 82212123 82212187 -102076475 + (TTTAA)n Simple_repeat Simple_repeat 4 67 0 2079 107 7 14 chr4 82212187 82212468 -102076194 - AluSx SINE Alu -31 281 1 550 234 112 57 chr4 82212552 82212953 -102075709 + L1MC5 LINE L1 7273 7695 -266 1106 175 90 14 chr4 82212970 82213193 -102075469 - AluJo SINE Alu -23 289 50 2119 113 28 0 chr4 82213770 82214061 -102074601 + AluSx SINE Alu 1 299 -13 217 35 0 0 chr4 82214102 82214131 -102074531 - MER5A DNA MER1_type -68 121 93 2064 139 47 30 chr4 82214131 82214533 -102074129 - L1MA4 LINE L1 0 6300 5892 7019 74 18 1 chr4 82214559 82216288 -102072374 + L1PA7 LINE L1 4411 6160 0 799 169 0 22 chr4 82216298 82216434 -102072228 + FLAM_C SINE Alu 1 133 0 26 0 0 0 chr4 82216889 82216915 -102071747 + AT_rich Low_complexity Low_complexity 1 26 0 2274 95 44 0 chr4 82216967 82217263 -102071399 + AluSq SINE Alu 1 309 -4 2382 74 0 3 chr4 82217265 82217562 -102071100 + AluY SINE Alu 6 301 -10 180 0 0 0 chr4 82217932 82217952 -102070710 + (T)n Simple_repeat Simple_repeat 1 20 0 513 304 112 13 chr4 82218242 82218466 -102070196 + MIR SINE MIR 4 249 -13 379 306 43 81 chr4 82219717 82219780 -102068882 - MER5A DNA MER1_type -2 187 123 2194 111 0 7 chr4 82219780 82220068 -102068594 + AluSg SINE Alu 1 286 -24 379 306 43 81 chr4 82220068 82220190 -102068472 - MER5A DNA MER1_type -66 123 9 214 324 35 64 chr4 82220793 82220966 -102067696 - L2 LINE L2 -219 3053 2886 1796 165 28 3 chr4 82221055 82221340 -102067322 + AluJb SINE Alu 1 292 -20 7476 40 13 10 chr4 82221377 82222845 -102065817 + SVA Other Other 1 1392 0 880 136 91 7 chr4 82222848 82223002 -102065660 + MSTC LTR MaLR 28 194 -234 2344 88 0 0 chr4 82223015 82223309 -102065353 - AluSx SINE Alu -18 294 1 245 136 114 0 chr4 82223310 82223354 -102065308 + MSTC LTR MaLR 181 229 -199 1431 152 44 22 chr4 82223467 82223737 -102064925 + AluSp SINE Alu 35 310 -3 365 275 185 19 chr4 82223767 82223978 -102064684 + L3 LINE CR1 1307 1552 -25 237 302 126 14 chr4 82224031 82224246 -102064416 - L1ME4a LINE L1 -4 6117 5879 1477 189 34 6 chr4 82225481 82225809 -102062853 + L1MD3 LINE L1 6771 7107 -888 950 211 127 27 chr4 82225866 82226210 -102062452 + L1MD3 LINE L1 7417 7995 0 324 0 0 0 chr4 82226217 82226253 -102062409 + (TG)n Simple_repeat Simple_repeat 1 36 0 293 228 0 0 chr4 82226454 82226511 -102062151 - Charlie2a DNA MER1_type 0 2862 2806 265 258 32 0 chr4 82226512 82226574 -102062088 - Charlie2a DNA MER1_type -1298 1564 1501 342 174 197 122 chr4 82226719 82226819 -102061843 - Charlie2a DNA MER1_type -2473 309 218 2407 71 0 3 chr4 82226819 82227127 -102061535 - AluSc SINE Alu -2 307 1 342 174 197 122 chr4 82227127 82227239 -102061423 - Charlie2a DNA MER1_type -2564 218 81 1656 154 56 36 chr4 82227701 82228007 -102060655 - AluJo SINE Alu 0 312 1 1953 127 81 0 chr4 82228037 82228320 -102060342 - AluSx SINE Alu -6 306 1 1504 198 47 13 chr4 82228867 82229165 -102059497 - AluJo SINE Alu -4 308 1 439 291 20 34 chr4 82229614 82229762 -102058900 - MER5A DNA MER1_type -1 188 43 4460 134 119 164 chr4 82229920 82230628 -102058034 - Charlie1a DNA MER1_type -1354 1407 799 1484 160 122 11 chr4 82230628 82230890 -102057772 - AluSx SINE Alu -21 291 1 4460 134 119 164 chr4 82230890 82231655 -102057007 - Charlie1a DNA MER1_type -1962 799 1 1197 227 107 37 chr4 82234169 82234600 -102054062 + Charlie4a DNA MER1_type 48 508 0 494 247 82 39 chr4 82234729 82234948 -102053714 - MIR SINE MIR -17 245 19 2311 60 40 13 chr4 82236416 82236718 -102051944 + AluY SINE Alu 1 310 -1 518 65 0 0 chr4 82237859 82237921 -102050741 - AluSq/x SINE Alu -189 124 63 2383 69 13 0 chr4 82238637 82238943 -102049719 - AluSp SINE Alu -3 310 1 379 277 18 9 chr4 82239370 82239482 -102049180 - MER5A DNA MER1_type 0 189 77 2052 96 0 0 chr4 82241503 82241764 -102046898 + AluSq SINE Alu 1 261 -52 1877 72 0 8 chr4 82241936 82242171 -102046491 + AluY SINE Alu 64 296 -15 1182 195 105 151 chr4 82242176 82242807 -102045855 - L1MB7 LINE L1 -16 6168 5567 241 247 0 82 chr4 82243834 82243907 -102044755 - L2 LINE L2 -82 3190 3124 507 169 0 0 chr4 82244128 82244205 -102044457 - FRAM SINE Alu -23 153 77 21 0 0 0 chr4 82244321 82244342 -102044320 + AT_rich Low_complexity Low_complexity 1 21 0 4525 138 136 33 chr4 82244822 82245665 -102042997 + MER21A LTR ERV1 2 931 0 1983 130 4 0 chr4 82246087 82246388 -102042274 - AluY SINE Alu 0 304 3 2242 101 0 13 chr4 82247528 82247836 -102040826 + AluSx SINE Alu 1 304 -8 310 275 9 37 chr4 82248152 82248261 -102040401 + L1MC4 LINE L1 6614 6719 -1323 420 221 7 15 chr4 82248261 82248397 -102040265 + (TA)n Simple_repeat Simple_repeat 2 136 0 37 0 0 0 chr4 82248480 82248517 -102040145 + AT_rich Low_complexity Low_complexity 1 37 0 1553 166 30 23 chr4 82248525 82248790 -102039872 - AluJo SINE Alu -44 268 2 194 273 172 23 chr4 82249603 82249731 -102038931 - MIR SINE MIR -2 260 114 2014 103 14 20 chr4 82250192 82250484 -102038178 - AluSx SINE Alu -22 290 1 438 272 101 25 chr4 82250826 82250984 -102037678 - MIR SINE MIR 0 262 93 934 149 35 50 chr4 82251153 82251354 -102037308 + MER20 DNA MER1_type 3 200 -19 323 286 36 0 chr4 82251572 82251656 -102037006 - MIR SINE MIR -156 106 20 890 102 126 0 chr4 82251671 82251825 -102036837 + AluSp SINE Alu 142 311 0 1019 129 0 7 chr4 82251842 82251989 -102036673 - AluSq/x SINE Alu -166 146 1 227 175 0 0 chr4 82253319 82253359 -102035303 + MER46A DNA MER2_type 25 64 -172 1091 108 17 40 chr4 82253376 82253552 -102035110 - AluSg/x SINE Alu -6 306 135 843 181 69 53 chr4 82253552 82253740 -102034922 + MER46A DNA MER2_type 46 236 0 351 240 91 0 chr4 82253899 82254009 -102034653 - L1ME2 LINE L1 0 6162 6044 1332 209 0 4 chr4 82255776 82256001 -102032661 - MER58A DNA MER1_type 0 224 1 216 267 17 0 chr4 82256867 82256927 -102031735 + L2 LINE L2 2976 3036 -236 1800 153 34 7 chr4 82258457 82258752 -102029910 + AluJo SINE Alu 1 303 -9 396 276 105 44 chr4 82259801 82260029 -102028633 - L2 LINE L2 -397 2917 2676 232 288 171 27 chr4 82260496 82260607 -102028055 - L2 LINE L2 -5 3267 3141 2428 77 0 0 chr4 82260874 82261172 -102027490 + AluY SINE Alu 1 298 -13 198 296 12 25 chr4 82261211 82261292 -102027370 - L2 LINE L2 -569 2745 2666 903 184 6 6 chr4 82262439 82262597 -102026065 - AluSc SINE Alu -23 286 129 2203 109 0 3 chr4 82262915 82263208 -102025454 - AluSx SINE Alu -20 292 1 2041 92 35 18 chr4 82265480 82265784 -102022878 - AluSx SINE Alu 0 312 1 2117 104 0 26 chr4 82266154 82266462 -102022200 - AluSq SINE Alu -13 300 1 1957 103 21 7 chr4 82266462 82266751 -102021911 - AluSx SINE Alu -8 304 11 696 91 0 0 chr4 82266852 82266940 -102021722 - AluS SINE Alu -224 89 2 354 188 78 62 chr4 82266950 82267078 -102021584 + MIR SINE MIR 110 239 -23 525 233 98 0 chr4 82267171 82267304 -102021358 + MER5A DNA MER1_type 43 188 -1 2156 115 17 0 chr4 82267497 82267793 -102020869 + AluSx SINE Alu 1 301 -11 2265 100 3 3 chr4 82269551 82269860 -102018802 - AluSc SINE Alu 0 309 1 333 269 59 0 chr4 82273574 82273693 -102014969 - L1ME2 LINE L1 -19 6145 6020 23 68 0 0 chr4 82275738 82275782 -102012880 + AT_rich Low_complexity Low_complexity 1 44 0 223 313 169 50 chr4 82276815 82276975 -102011687 - MIR3 SINE MIR -1 207 29 2180 109 0 29 chr4 82277190 82277503 -102011159 - AluSc SINE Alu -5 304 1 583 291 77 37 chr4 82277503 82277881 -102010781 - L2 LINE L2 -11 3302 2910 1205 188 23 35 chr4 82277886 82278147 -102010515 + AluJb SINE Alu 26 283 -29 1074 291 78 58 chr4 82278183 82278877 -102009785 - L2 LINE L2 -414 2900 2193 535 266 74 71 chr4 82279387 82279752 -102008910 - L2 LINE L2 -9 3304 2939 271 167 0 19 chr4 82279846 82279906 -102008756 - MER5B DNA MER1_type -6 172 122 923 208 16 16 chr4 82280752 82280944 -102007718 - AluJo SINE Alu -35 277 86 690 281 60 23 chr4 82282586 82282803 -102005859 - MIR SINE MIR -24 238 14 277 236 0 65 chr4 82283163 82283257 -102005405 + MIR SINE MIR 81 169 -39 246 241 94 52 chr4 82283820 82284003 -102004659 - MIR SINE MIR -50 212 17 627 334 140 35 chr4 82284345 82285411 -102003251 + L2 LINE L2 1603 2780 -534 2431 84 13 0 chr4 82286315 82286624 -102002038 + AluSq SINE Alu 1 313 0 388 247 280 21 chr4 82287277 82287463 -102001199 + MER102b DNA MER1_type 85 318 -23 1728 225 19 19 chr4 82287888 82288253 -102000409 - MLT1A1 LTR MaLR 0 365 1 374 338 60 30 chr4 82288676 82288910 -101999752 + MIR SINE MIR 5 245 -17 2108 98 9 19 chr4 82289004 82289320 -101999342 - AluSp SINE Alu 0 313 1 1761 143 28 14 chr4 82290241 82290378 -101998284 + AluJb SINE Alu 1 135 -177 2212 105 24 3 chr4 82290378 82290673 -101997989 + AluSq SINE Alu 2 302 -11 1761 143 28 14 chr4 82290673 82290822 -101997840 + AluJb SINE Alu 135 291 -21 2205 100 88 20 chr4 82290870 82291211 -101997451 - THE1B LTR MaLR 0 364 1 252 222 102 46 chr4 82291299 82291407 -101997255 - MER113 DNA MER1_type? -407 114 1 1224 211 4 23 chr4 82292124 82292390 -101996272 + AluJo SINE Alu 44 304 -8 204 179 0 71 chr4 82293006 82293062 -101995600 - MIR SINE MIR -14 248 197 189 0 0 0 chr4 82295051 82295072 -101993590 + (T)n Simple_repeat Simple_repeat 1 21 0 472 203 32 20 chr4 82295184 82295442 -101993220 + CT-rich Low_complexity Low_complexity 1 261 0 2090 93 3 75 chr4 82295594 82295777 -101992885 - AluSg SINE Alu -12 298 146 2100 121 3 0 chr4 82295777 82296075 -101992587 - AluSg SINE Alu -9 301 3 2090 93 3 75 chr4 82296075 82296212 -101992450 - AluSg SINE Alu -164 146 1 21 0 0 0 chr4 82296949 82296970 -101991692 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 82297281 82297302 -101991360 + AT_rich Low_complexity Low_complexity 1 21 0 2459 60 0 3 chr4 82297855 82298156 -101990506 + AluY SINE Alu 1 300 -11 27 0 0 0 chr4 82298278 82298305 -101990357 + AT_rich Low_complexity Low_complexity 1 27 0 1903 121 3 37 chr4 82298305 82298602 -101990060 - AluSx SINE Alu -25 287 1 270 0 0 0 chr4 82299051 82299081 -101989581 + (A)n Simple_repeat Simple_repeat 1 30 0 198 167 0 0 chr4 82299733 82299769 -101988893 + (TG)n Simple_repeat Simple_repeat 2 37 0 274 250 26 0 chr4 82301094 82301170 -101987492 + (TA)n Simple_repeat Simple_repeat 2 79 0 213 329 165 24 chr4 82301694 82301864 -101986798 - L2 LINE L2 -4 3268 3075 193 224 0 20 chr4 82302802 82302851 -101985811 - MIR SINE MIR -54 208 161 1385 265 98 38 chr4 82303298 82303954 -101984708 - L1MC4a LINE L1 -1692 6116 5422 316 306 44 44 chr4 82304713 82304873 -101983789 - MIR SINE MIR -68 194 35 216 312 0 39 chr4 82305399 82305476 -101983186 + MIR SINE MIR 61 134 -128 22 0 0 0 chr4 82305476 82305498 -101983164 + AT_rich Low_complexity Low_complexity 1 22 0 241 178 96 27 chr4 82305529 82305602 -101983060 + MIR SINE MIR 123 200 -62 21 0 0 0 chr4 82305801 82305822 -101982840 + AT_rich Low_complexity Low_complexity 1 21 0 669 169 76 17 chr4 82306311 82306429 -101982233 + FLAM_A SINE Alu 1 125 -8 734 209 62 58 chr4 82306712 82306911 -101981751 + L1MC4 LINE L1 7817 8019 -23 2324 82 7 3 chr4 82306911 82307215 -101981447 - AluY SINE Alu -6 305 1 734 209 62 58 chr4 82307215 82307240 -101981422 + L1MC4 LINE L1 8019 8042 0 39 0 0 0 chr4 82308276 82308315 -101980347 + AT_rich Low_complexity Low_complexity 1 39 0 977 135 0 0 chr4 82308341 82308482 -101980180 - AluJo SINE Alu -171 141 1 183 80 0 0 chr4 82309111 82309136 -101979526 + (TATG)n Simple_repeat Simple_repeat 2 26 0 1058 157 0 17 chr4 82309561 82309733 -101978929 - AluJb SINE Alu -57 255 87 1759 133 0 38 chr4 82310010 82310365 -101978297 + AluSx SINE Alu 1 344 0 2008 116 35 0 chr4 82311504 82311789 -101976873 - AluSx SINE Alu -17 295 1 415 233 10 37 chr4 82312343 82312470 -101976192 + MIR3 SINE MIR 66 188 -20 261 291 264 0 chr4 82312953 82313063 -101975599 - L2 LINE L2 0 3272 3134 313 323 8 16 chr4 82313117 82313244 -101975418 - L2 LINE L2 -311 2961 2836 1002 122 58 6 chr4 82314354 82314510 -101974152 - AluSg/x SINE Alu -13 299 136 1482 121 132 19 chr4 82314512 82314797 -101973865 - AluSg1 SINE Alu 0 309 1 186 318 93 19 chr4 82314848 82314955 -101973707 + MIR3 SINE MIR 68 182 -26 1941 147 7 33 chr4 82316486 82316793 -101971869 + AluJb SINE Alu 1 299 -13 23 54 0 0 chr4 82316824 82316861 -101971801 + AT_rich Low_complexity Low_complexity 1 37 0 2367 88 0 7 chr4 82316871 82317178 -101971484 + AluSc SINE Alu 1 305 -4 1874 150 7 0 chr4 82317751 82318044 -101970618 + AluJb SINE Alu 1 295 -17 455 224 12 0 chr4 82318291 82318376 -101970286 + MER58A DNA MER1_type 18 103 -4 313 231 15 0 chr4 82318383 82318448 -101970214 + MER58A DNA MER1_type 159 224 0 196 358 111 33 chr4 82319579 82319822 -101968840 + L2 LINE L2 2565 2826 -488 248 361 183 20 chr4 82320009 82320211 -101968451 + L2 LINE L2 3038 3272 0 2034 136 7 3 chr4 82320864 82321166 -101967496 - AluSq SINE Alu -10 303 1 463 82 0 0 chr4 82322044 82322105 -101966557 - Alu SINE Alu -11 301 241 839 171 0 0 chr4 82322132 82322272 -101966390 - FLAM_C SINE Alu -3 140 1 844 185 40 29 chr4 82322282 82322455 -101966207 - FAM SINE Alu 0 175 1 735 172 9 9 chr4 82322526 82322642 -101966020 - FLAM_A SINE Alu -21 121 6 1952 147 7 3 chr4 82325150 82325449 -101963213 - AluSx SINE Alu -12 300 1 226 295 0 16 chr4 82325451 82325512 -101963150 - L2 LINE L2 -29 3243 3184 194 271 0 0 chr4 82325615 82325663 -101962999 - L2 LINE L2 -252 3061 3014 323 198 170 38 chr4 82326332 82326438 -101962224 + L2 LINE L2 3175 3294 -19 1573 179 10 28 chr4 82327045 82327336 -101961326 + AluJb SINE Alu 14 299 -13 1647 164 57 0 chr4 82329865 82330146 -101958516 + AluJb SINE Alu 1 297 -15 291 197 33 0 chr4 82330844 82330905 -101957757 - MIR SINE MIR -16 246 184 2339 90 0 0 chr4 82331841 82332129 -101956533 + AluSx SINE Alu 1 288 -24 961 216 108 10 chr4 82333407 82333611 -101955051 - MER58A DNA MER1_type 0 224 1 2169 107 119 3 chr4 82335945 82336170 -101952492 - L1MA3 LINE L1 -3 6302 6022 437 34 17 0 chr4 82336170 82336229 -101952433 + (TTTTG)n Simple_repeat Simple_repeat 4 63 0 2169 107 119 3 chr4 82336229 82336348 -101952314 - L1MA3 LINE L1 -283 6022 5918 2787 6 0 31 chr4 82336739 82337057 -101951605 - AluY SINE Alu -3 308 1 23 0 0 29 chr4 82337067 82337083 -101951579 + AT_rich Low_complexity Low_complexity 1 16 -17 2455 97 0 0 chr4 82337083 82337394 -101951268 - AluSx SINE Alu -1 311 1 23 0 0 29 chr4 82337394 82337411 -101951251 + AT_rich Low_complexity Low_complexity 16 33 0 1562 160 56 4 chr4 82339031 82339300 -101949362 - AluJo SINE Alu -20 292 10 902 155 7 0 chr4 82339479 82339621 -101949041 + FRAM SINE Alu 20 162 -14 1773 147 7 26 chr4 82341349 82341656 -101947006 - AluJb SINE Alu -11 301 1 204 40 0 0 chr4 82342571 82342596 -101946066 + (TG)n Simple_repeat Simple_repeat 1 25 0 246 250 331 22 chr4 82343155 82343291 -101945371 - MER5B DNA MER1_type 0 178 1 22 0 0 0 chr4 82344215 82344237 -101944425 + AT_rich Low_complexity Low_complexity 1 22 0 1308 144 136 0 chr4 82344265 82344501 -101944161 - AluJo SINE Alu -23 289 22 1178 167 124 45 chr4 82344503 82344864 -101943798 - MER51A LTR ERV1 -11 623 1 260 146 236 0 chr4 82344864 82344905 -101943757 - AluSp SINE Alu -121 182 129 1747 164 27 0 chr4 82345036 82345328 -101943334 + AluJo SINE Alu 1 300 -12 224 295 26 0 chr4 82346124 82346202 -101942460 - MIR3 SINE MIR 0 208 129 407 165 13 0 chr4 82348522 82348601 -101940061 - Charlie5 DNA MER1_type -29 2583 2504 234 0 0 0 chr4 82348621 82348647 -101940015 + (A)n Simple_repeat Simple_repeat 1 26 0 2041 129 11 0 chr4 82348647 82348934 -101939728 - AluSx SINE Alu -22 290 1 352 326 49 21 chr4 82351158 82351302 -101937360 - MIR SINE MIR -96 166 19 2202 95 3 11 chr4 82352921 82353204 -101935458 - AluSx SINE Alu -31 281 1 256 267 0 33 chr4 82353214 82353304 -101935358 + CT-rich Low_complexity Low_complexity 3 89 0 482 248 17 17 chr4 82354822 82354939 -101933723 - MER94 DNA DNA 0 134 18 2222 129 7 0 chr4 82355704 82356014 -101932648 - AluSx SINE Alu 0 312 1 2065 114 0 17 chr4 82358420 82358737 -101929925 - AluSx SINE Alu 0 312 1 441 229 101 0 chr4 82359307 82359416 -101929246 - L2 LINE L2 -2 3311 3192 246 360 12 0 chr4 82359640 82359726 -101928936 - L2 LINE L2 0 3313 3227 341 253 0 0 chr4 82359822 82359897 -101928765 + L2 LINE L2 3197 3271 -1 197 349 0 0 chr4 82361074 82361137 -101927525 - L2 LINE L2 -23 3290 3228 257 179 60 0 chr4 82361245 82361312 -101927350 + T-rich Low_complexity Low_complexity 2 72 0 216 0 0 0 chr4 82364230 82364254 -101924408 + (TG)n Simple_repeat Simple_repeat 2 25 0 261 0 0 0 chr4 82365077 82365106 -101923556 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 205 216 0 0 chr4 82366076 82366113 -101922549 + (TATG)n Simple_repeat Simple_repeat 2 38 0 180 0 0 0 chr4 82366205 82366225 -101922437 + (TTATA)n Simple_repeat Simple_repeat 5 24 0 22 35 0 0 chr4 82366728 82366757 -101921905 + AT_rich Low_complexity Low_complexity 1 29 0 339 352 101 13 chr4 82367171 82367398 -101921264 + MIR SINE MIR 13 259 -3 329 295 202 0 chr4 82368010 82368312 -101920350 - L1MC4 LINE L1 -62 7980 7618 1786 141 74 3 chr4 82368342 82368626 -101920036 - AluJb SINE Alu -8 304 1 226 228 18 0 chr4 82368817 82368874 -101919788 - L1MC5 LINE L1 -734 7227 7170 2488 54 0 7 chr4 82368932 82369230 -101919432 + AluY SINE Alu 1 296 -15 1111 205 98 46 chr4 82370773 82371100 -101917562 - MER2 DNA MER2_type 0 345 2 459 226 52 91 chr4 82371257 82371484 -101917178 - L1MC5 LINE L1 -2000 5808 5590 2088 87 7 68 chr4 82371484 82371793 -101916869 + AluSc SINE Alu 1 290 -19 459 226 52 91 chr4 82371793 82371817 -101916845 - L1MC5 LINE L1 -2218 5590 5567 325 281 104 8 chr4 82371840 82372025 -101916637 - L1MC5 LINE L1 -721 5430 5277 1723 128 46 49 chr4 82373067 82373412 -101915250 + MER2 DNA MER2_type 1 344 0 224 225 38 62 chr4 82374210 82374290 -101914372 + MIR3 SINE MIR 89 166 -42 2269 117 0 0 chr4 82374481 82374790 -101913872 + AluSg SINE Alu 1 309 -1 2339 84 3 3 chr4 82375050 82375348 -101913314 + AluSp SINE Alu 1 298 -15 22 0 0 0 chr4 82375975 82375997 -101912665 + AT_rich Low_complexity Low_complexity 1 22 0 2225 218 66 32 chr4 82376649 82377360 -101911302 + L1ME1 LINE L1 5427 6161 -5 1707 155 11 0 chr4 82377925 82378196 -101910466 + AluJo SINE Alu 21 294 -18 2134 143 3 20 chr4 82378216 82378559 -101910103 - MER1B DNA MER1_type 0 337 1 358 308 84 28 chr4 82378675 82378889 -101909773 + L1MEd LINE L1 10 235 -5884 676 249 65 34 chr4 82378934 82379259 -101909403 + L1MEd LINE L1 545 879 -5240 * 6032 139 33 26 chr4 82379254 82381231 -101907431 + L1MA4A LINE L1 4125 6110 -193 506 165 0 0 chr4 82381242 82381333 -101907329 + L1MA4A LINE L1 6189 6279 -24 213 288 0 17 chr4 82381454 82381489 -101907173 + GA-rich Low_complexity Low_complexity 1 36 -22 1946 150 3 7 chr4 82381489 82381783 -101906879 + AluJo SINE Alu 1 293 -19 213 288 0 17 chr4 82381783 82381806 -101906856 + GA-rich Low_complexity Low_complexity 36 58 0 341 274 103 33 chr4 82381838 82381878 -101906784 + L1ME LINE L1 4624 4660 -1486 1038 190 130 7 chr4 82381878 82382147 -101906515 + AluJo SINE Alu 1 302 0 341 274 103 33 chr4 82382147 82382561 -101906101 + L1ME LINE L1 4660 5109 -1037 326 189 250 0 chr4 82382670 82382802 -101905860 + L1ME LINE L1 5256 5420 -2388 534 263 132 38 chr4 82382837 82383126 -101905536 + L1ME LINE L1 5408 5723 -447 186 43 0 0 chr4 82383126 82383149 -101905513 + (A)n Simple_repeat Simple_repeat 1 23 0 1339 99 0 0 chr4 82383228 82383400 -101905262 - AluSg/x SINE Alu -11 299 128 215 329 24 12 chr4 82384961 82385046 -101903616 - MER5A DNA MER1_type 0 189 104 242 325 77 8 chr4 82385120 82385237 -101903425 + MIR SINE MIR 134 258 -4 192 224 90 0 chr4 82385243 82385310 -101903352 - MIR SINE MIR -106 156 84 317 330 11 11 chr4 82385517 82385611 -101903051 - MIR SINE MIR -141 121 28 1733 164 11 11 chr4 82385998 82386299 -101902363 + AluJb SINE Alu 1 301 0 501 169 0 113 chr4 82387024 82387148 -101901514 - FLAM_A SINE Alu -32 110 1 343 183 14 0 chr4 82387520 82387591 -101901071 - MER58 DNA MER1_type -6 2414 2343 205 309 96 70 chr4 82388153 82388454 -101900208 + L2 LINE L2 2349 2657 -657 233 230 81 69 chr4 82388746 82388833 -101899829 - MIR SINE MIR -105 103 16 252 0 0 0 chr4 82390472 82390500 -101898162 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1604 157 107 4 chr4 82390536 82390816 -101897846 - AluJb SINE Alu -1 311 3 21 57 0 0 chr4 82391053 82391088 -101897574 + AT_rich Low_complexity Low_complexity 1 35 0 315 121 0 17 chr4 82392031 82392089 -101896573 - Alu SINE Alu 0 302 246 2146 65 75 17 chr4 82392189 82392481 -101896181 + AluY SINE Alu 2 310 -1 2270 109 0 0 chr4 82392684 82392997 -101895665 + AluSx SINE Alu 1 313 0 780 128 0 0 chr4 82392998 82393139 -101895523 + AluSg/x SINE Alu 178 318 0 268 256 163 0 chr4 82393580 82393666 -101894996 + MARNA DNA Mariner 49 148 -438 427 279 76 25 chr4 82393795 82393992 -101894670 - MARNA DNA Mariner -302 284 78 2287 109 6 3 chr4 82395227 82395538 -101893124 - AluSq SINE Alu -1 312 1 24 32 0 0 chr4 82396442 82396473 -101892189 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr4 82396563 82396592 -101892070 + AT_rich Low_complexity Low_complexity 1 29 0 2344 43 0 7 chr4 82398590 82398872 -101889790 + AluY SINE Alu 1 280 -31 2097 147 0 3 chr4 82399168 82399468 -101889194 + AluSx SINE Alu 1 299 -13 1681 168 7 29 chr4 82399726 82400035 -101888627 + AluJo SINE Alu 1 302 -10 290 197 49 0 chr4 82400934 82400995 -101887667 - MER91B DNA MER1_type -107 83 20 336 183 24 24 chr4 82401457 82401539 -101887123 + MIR SINE MIR 181 262 0 266 361 100 6 chr4 82401811 82401991 -101886671 + L2 LINE L2 1960 2156 -1158 238 155 0 121 chr4 82402135 82402193 -101886469 + MLT1E2 LTR MaLR 1 51 -603 1456 243 152 0 chr4 82402237 82402657 -101886005 + MLT1E2 LTR MaLR 143 626 0 442 355 44 44 chr4 82402702 82403043 -101885619 + L2 LINE L2 2394 2734 -580 23 33 0 0 chr4 82403043 82403073 -101885589 + AT_rich Low_complexity Low_complexity 1 30 0 272 309 24 24 chr4 82403379 82403502 -101885160 + L2 LINE L2 3121 3243 -70 197 174 0 22 chr4 82404374 82404420 -101884242 + (TA)n Simple_repeat Simple_repeat 2 46 0 2357 95 0 0 chr4 82404430 82404725 -101883937 - AluSq SINE Alu -18 295 1 265 339 77 23 chr4 82405095 82405225 -101883437 - L3 LINE CR1 -341 1236 1100 247 146 34 22 chr4 82405250 82405339 -101883323 - Charlie7 DNA MER1_type -71 2541 2452 418 293 159 62 chr4 82405401 82405872 -101882790 - L3 LINE CR1 -502 1075 559 354 289 41 23 chr4 82406016 82406205 -101882457 + L1M4 LINE L1 3988 4178 -1968 * 388 192 160 0 chr4 82406199 82406324 -101882338 + L1MD3 LINE L1 7773 7917 -78 567 178 126 22 chr4 82406406 82406541 -101882121 - MER20 DNA MER1_type -31 188 40 21 36 0 0 chr4 82406836 82406864 -101881798 + AT_rich Low_complexity Low_complexity 1 28 0 1965 118 43 4 chr4 82407137 82407439 -101881223 + AluSq SINE Alu 1 313 0 195 100 0 0 chr4 82407465 82407495 -101881167 + (CA)n Simple_repeat Simple_repeat 1 30 0 1621 175 0 0 chr4 82407519 82407770 -101880892 - AluJo SINE Alu -20 292 42 2169 57 14 14 chr4 82408002 82408304 -101880358 + AluY SINE Alu 1 302 0 365 328 36 21 chr4 82408514 82408706 -101879956 + L2 LINE L2 2897 3091 -181 1366 136 122 0 chr4 82409312 82409525 -101879137 + AluJb SINE Alu 1 239 -73 1496 165 0 16 chr4 82410145 82410400 -101878262 + AluJo SINE Alu 49 299 -13 1538 174 43 60 chr4 82410430 82410780 -101877882 + MER7A DNA MER2_type 1 342 -4 264 211 53 0 chr4 82411397 82411454 -101877208 + MIR SINE MIR 75 134 -128 447 157 0 9 chr4 82411455 82411539 -101877123 - MER58A DNA MER1_type -10 97 15 431 279 284 10 chr4 82411660 82411857 -101876805 + MIR SINE MIR 12 262 0 564 222 0 16 chr4 82412076 82412202 -101876460 + MIR SINE MIR 75 198 -64 405 0 0 0 chr4 82412218 82412263 -101876399 + (TA)n Simple_repeat Simple_repeat 1 45 0 525 267 77 15 chr4 82412278 82412473 -101876189 - MIR SINE MIR -49 213 7 2065 149 0 0 chr4 82412593 82412901 -101875761 - AluSx SINE Alu -4 308 1 417 204 97 0 chr4 82414723 82414826 -101873836 - MIR SINE MIR -97 165 53 21 0 0 0 chr4 82414976 82414997 -101873665 + AT_rich Low_complexity Low_complexity 1 21 0 1728 163 0 41 chr4 82415154 82415448 -101873214 - AluJb SINE Alu -30 282 1 730 141 30 44 chr4 82415453 82415588 -101873074 - FLAM_C SINE Alu 0 133 1 1042 156 151 0 chr4 82415798 82416010 -101872652 + L1MC1 LINE L1 6085 6328 -5 1987 84 77 7 chr4 82416045 82416319 -101872343 - AluSc SINE Alu -16 293 1 2331 93 0 7 chr4 82416538 82416839 -101871823 - AluSx SINE Alu -13 299 1 24 85 0 0 chr4 82417726 82417785 -101870877 + GC_rich Low_complexity Low_complexity 1 59 0 22 35 0 0 chr4 82418351 82418380 -101870282 + GC_rich Low_complexity Low_complexity 1 29 0 2360 86 3 0 chr4 82418918 82419220 -101869442 + AluSc SINE Alu 1 303 -6 2414 179 90 14 chr4 82419747 82420333 -101868329 + LTR48B LTR ERV1 1 631 -13 2428 99 0 0 chr4 82420374 82420686 -101867976 - AluSq SINE Alu -1 312 1 1467 167 67 19 chr4 82420744 82420923 -101867739 - AluJb SINE Alu 0 311 112 275 0 29 0 chr4 82420923 82420958 -101867704 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 1467 167 67 19 chr4 82420958 82421076 -101867586 - AluJb SINE Alu -199 112 1 386 231 104 22 chr4 82421232 82421366 -101867296 - L2 LINE L2 0 3313 3169 1002 103 0 22 chr4 82421864 82422000 -101866662 - AluSg/x SINE Alu -15 295 163 346 62 20 0 chr4 82422002 82422059 -101866603 - Alu SINE Alu -252 50 1 21 71 0 0 chr4 82422261 82422303 -101866359 + AT_rich Low_complexity Low_complexity 1 42 0 26 74 0 0 chr4 82422493 82422547 -101866115 + AT_rich Low_complexity Low_complexity 1 54 0 230 232 36 36 chr4 82423271 82423383 -101865279 + L2 LINE L2 2279 2390 -924 439 44 0 132 chr4 82423593 82423630 -101865032 + L1MB3 LINE L1 6105 6128 -55 1862 163 0 7 chr4 82423630 82423936 -101864726 + AluJo SINE Alu 1 304 -8 439 44 0 132 chr4 82423936 82423986 -101864676 + L1MB3 LINE L1 6128 6183 0 869 142 26 26 chr4 82423996 82424151 -101864511 - MER5A DNA MER1_type -18 171 17 245 250 59 15 chr4 82424421 82424489 -101864173 + L2 LINE L2 3242 3312 -1 * 286 380 27 79 chr4 82424486 82424815 -101863847 + L2 LINE L2 2961 3272 0 1580 164 31 31 chr4 82424908 82425200 -101863462 + AluJo SINE Alu 11 302 -10 1247 183 88 7 chr4 82425283 82425556 -101863106 + AluSx SINE Alu 1 295 -17 247 275 75 12 chr4 82425563 82425643 -101863019 - MIR SINE MIR -75 133 49 276 281 156 0 chr4 82425750 82425886 -101862776 + MIR SINE MIR 34 189 -67 2446 52 13 16 chr4 82426084 82426389 -101862273 + AluY SINE Alu 1 304 -7 22 0 0 0 chr4 82426697 82426719 -101861943 + AT_rich Low_complexity Low_complexity 1 22 0 207 324 72 36 chr4 82426931 82427042 -101861620 - L2 LINE L2 -12 3260 3146 22 0 0 0 chr4 82427188 82427210 -101861452 + AT_rich Low_complexity Low_complexity 1 22 0 228 265 0 0 chr4 82428001 82428050 -101860612 - MARNA DNA Mariner -75 511 463 479 202 0 40 chr4 82428187 82428286 -101860376 + MER31A LTR ERV1 353 447 -38 272 202 24 48 chr4 82428734 82428818 -101859844 + GA-rich Low_complexity Low_complexity 4 85 0 21 57 0 0 chr4 82429038 82429073 -101859589 + AT_rich Low_complexity Low_complexity 1 35 0 2041 129 0 30 chr4 82430183 82430485 -101858177 - AluSx SINE Alu -19 293 1 510 210 38 70 chr4 82430564 82430619 -101858043 - MIR SINE MIR 0 262 207 1990 148 3 3 chr4 82430619 82430917 -101857745 - AluJb SINE Alu -14 298 1 510 210 38 70 chr4 82430917 82431018 -101857644 - MIR SINE MIR -55 207 111 400 271 14 7 chr4 82431145 82431289 -101857373 - L1ME LINE L1 -365 5756 5612 195 42 0 0 chr4 82431365 82431389 -101857273 + (TTG)n Simple_repeat Simple_repeat 3 26 0 678 157 0 0 chr4 82431396 82431498 -101857164 - AluJ/FLAM SINE Alu -210 102 1 2260 168 10 0 chr4 82433096 82433483 -101855179 - MER57A LTR ERV1 -5 398 8 519 113 12 0 chr4 82433733 82433813 -101854849 + MER51A LTR ERV1 470 550 -84 2175 74 10 42 chr4 82433882 82434194 -101854468 + AluSc SINE Alu 1 302 -7 682 88 0 0 chr4 82434500 82434591 -101854071 + AluS SINE Alu 1 91 -221 1746 133 12 0 chr4 82434694 82434943 -101853719 + AluSx SINE Alu 48 299 -13 1017 223 33 0 chr4 82434952 82435163 -101853499 - MLT1A1 LTR MaLR -4 361 144 1726 178 24 0 chr4 82435469 82435756 -101852906 + AluJb SINE Alu 1 294 -18 36 40 0 0 chr4 82435819 82435869 -101852793 + AT_rich Low_complexity Low_complexity 1 50 0 5074 149 6 20 chr4 82435873 82436730 -101851932 - L1PA16 LINE L1 0 6166 5322 793 168 69 17 chr4 82436730 82436903 -101851759 + Tigger3(Golem) DNA MER2_type 2762 2943 -86 6258 132 47 60 chr4 82436912 82438159 -101850503 - Tigger3b DNA MER2_type 0 1231 2 1088 192 35 118 chr4 82438339 82438677 -101849985 + MLT1A1 LTR MaLR 1 310 -55 1185 156 24 33 chr4 82438678 82438889 -101849773 + AluJo SINE Alu 7 215 -97 207 385 77 0 chr4 82439118 82439248 -101849414 - MIR3 SINE MIR -56 152 13 736 178 0 15 chr4 82440262 82440397 -101848265 - FLAM_C SINE Alu 0 133 1 372 271 240 0 chr4 82440703 82440832 -101847830 + MIR SINE MIR 29 188 -74 304 260 71 95 chr4 82441043 82441212 -101847450 + MIR SINE MIR 61 225 -37 2137 244 58 8 chr4 82441439 82441956 -101846706 + MLT1E LTR MaLR 51 593 0 591 101 8 78 chr4 82442067 82442109 -101846553 + L1ME1 LINE L1 2179 2222 -4174 783 183 78 104 chr4 82442109 82442235 -101846427 - MER58A DNA MER1_type -2196 224 96 288 0 0 0 chr4 82442235 82442267 -101846395 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 783 183 78 104 chr4 82442267 82442319 -101846343 - MER58A DNA MER1_type -2324 96 51 2111 132 0 3 chr4 82442319 82442623 -101846039 + AluSx SINE Alu 1 303 -9 783 183 78 104 chr4 82442623 82442673 -101845989 - MER58A DNA MER1_type -2369 51 1 591 101 8 78 chr4 82442673 82442759 -101845903 + L1ME1 LINE L1 2222 2298 -4098 1841 152 120 113 chr4 82442761 82443319 -101845343 + L1MD2 LINE L1 5796 6357 -2 403 183 22 66 chr4 82443314 82443451 -101845211 + L1ME1 LINE L1 2286 2416 -3980 * 1442 166 21 149 chr4 82443555 82443990 -101844672 + L1MB2 LINE L1 4930 5419 -727 696 190 0 29 chr4 82443990 82444127 -101844535 + FLAM_A SINE Alu 1 133 0 1442 166 21 149 chr4 82444127 82444147 -101844515 + L1MB2 LINE L1 5419 5315 -831 1950 148 26 3 chr4 82444147 82444451 -101844211 + AluJo SINE Alu 2 312 0 1442 166 21 149 chr4 82444451 82444512 -101844150 + L1MB2 LINE L1 5314 5381 -765 1111 161 5 57 chr4 82444513 82444724 -101843938 + MER2 DNA MER2_type 2 201 -144 290 288 0 0 chr4 82444758 82444824 -101843838 + MER2 DNA MER2_type 280 345 0 3949 161 64 5 chr4 82444825 82445571 -101843091 + L1MB2 LINE L1 5381 6170 -1 1874 223 30 45 chr4 82445562 82446225 -101842437 + L1ME1 LINE L1 2453 3105 -3110 * 1158 94 29 18 chr4 82446235 82446406 -101842256 + AluY SINE Alu 127 299 -12 297 199 114 36 chr4 82446409 82446575 -101842087 + L1ME1 LINE L1 3114 3292 -2923 1070 71 0 0 chr4 82446575 82446702 -101841960 - AluSq/x SINE Alu -186 127 1 1756 241 93 15 chr4 82446706 82447319 -101841343 + L1ME1 LINE L1 3285 3945 -2270 417 226 176 0 chr4 82447379 82447538 -101841124 + L1ME1 LINE L1 4196 4382 -1833 2170 92 34 7 chr4 82447538 82447833 -101840829 + AluY SINE Alu 1 303 -8 37 23 0 0 chr4 82447931 82447975 -101840687 + AT_rich Low_complexity Low_complexity 1 44 0 1191 207 95 2 chr4 82447979 82448354 -101840308 + L1ME1 LINE L1 5088 5497 -738 765 156 96 37 chr4 82448361 82448496 -101840166 + FAM SINE Alu 2 144 -41 2797 232 13 50 chr4 82448526 82449273 -101839389 + L1ME1 LINE L1 5496 6215 -20 1735 184 0 0 chr4 82449407 82449695 -101838967 + AluJo SINE Alu 1 288 -24 243 0 0 0 chr4 82449695 82449722 -101838940 + (CA)n Simple_repeat Simple_repeat 2 28 0 366 163 65 22 chr4 82449752 82449844 -101838818 - MIR SINE MIR -28 234 139 975 302 123 16 chr4 82550146 82550576 -101738086 - MLT1J LTR MaLR -35 476 1 252 292 0 0 chr4 82550949 82551021 -101737641 + (TAG)n Simple_repeat Simple_repeat 1 72 0 1890 155 0 3 chr4 82551045 82551336 -101737326 + AluJb SINE Alu 3 292 -20 2424 165 42 24 chr4 82551346 82551801 -101736861 + L1MB3 LINE L1 5440 5902 -281 629 291 62 98 chr4 82552002 82552133 -101736529 - L2 LINE L2 0 3313 3179 2076 113 3 29 chr4 82552133 82552443 -101736219 + AluSx SINE Alu 1 302 -10 2334 94 17 0 chr4 82552447 82552746 -101735916 + AluSx SINE Alu 1 304 -8 629 291 62 98 chr4 82552746 82552841 -101735821 - L2 LINE L2 -137 3176 3079 847 152 134 101 chr4 82552841 82553058 -101735604 - MER58A DNA MER1_type 0 224 1 629 291 62 98 chr4 82553058 82553292 -101735370 - L2 LINE L2 -234 3079 2864 1178 99 0 0 chr4 82554109 82554270 -101734392 + L1P4 LINE L1 5600 5760 -401 22 0 0 0 chr4 82554278 82554300 -101734362 + AT_rich Low_complexity Low_complexity 1 22 0 2180 94 43 3 chr4 82554300 82554599 -101734063 - AluY SINE Alu 0 311 1 8569 102 5 0 chr4 82554723 82555963 -101732699 - L1P LINE L1 -2597 3549 2304 189 0 0 0 chr4 82555963 82555984 -101732678 + (T)n Simple_repeat Simple_repeat 1 21 0 743 99 0 10 chr4 82556158 82556259 -101732403 - AluSq/x SINE Alu -176 137 38 432 0 0 0 chr4 82556452 82556500 -101732162 + (TG)n Simple_repeat Simple_repeat 1 48 0 343 265 176 27 chr4 82556801 82556969 -101731693 - MIR3 SINE MIR -56 152 4 493 278 94 28 chr4 82557361 82557541 -101731121 + MIR3 SINE MIR 16 207 -1 28 29 0 0 chr4 82557627 82557662 -101731000 + AT_rich Low_complexity Low_complexity 1 35 0 1791 179 6 13 chr4 82557862 82558175 -101730487 - AluJo SINE Alu -1 311 1 585 273 74 51 chr4 82558237 82558254 -101730408 + MIR SINE MIR 1 16 -246 1454 113 9 27 chr4 82558254 82558476 -101730186 - MER20 DNA MER1_type -1 218 1 585 273 74 51 chr4 82558476 82558619 -101730043 + MIR SINE MIR 16 172 -90 2389 174 95 48 chr4 82558619 82559075 -101729587 + MLT2B1 LTR ERVL 1 483 -37 617 76 11 0 chr4 82559075 82559167 -101729495 + (TCTA)n Simple_repeat Simple_repeat 2 94 0 2389 174 95 48 chr4 82559167 82559205 -101729457 + MLT2B1 LTR ERVL 483 518 -2 585 273 74 51 chr4 82559205 82559299 -101729363 + MIR SINE MIR 172 262 0 3583 158 37 93 chr4 82559859 82560533 -101728129 - MER21A LTR ERV1 -7 924 301 1330 205 64 14 chr4 82560533 82560816 -101727846 - AluJo SINE Alu -15 297 1 3583 158 37 93 chr4 82560816 82560949 -101727713 - MER21A LTR ERV1 -630 301 162 1778 95 0 0 chr4 82561095 82561336 -101727326 + L1PA13 LINE L1 5923 6163 0 431 271 78 8 chr4 82561673 82561802 -101726860 + L2 LINE L2 3134 3271 -1 37 23 0 0 chr4 82561972 82562016 -101726646 + AT_rich Low_complexity Low_complexity 1 44 0 2436 92 0 0 chr4 82562033 82562339 -101726323 - AluSx SINE Alu -6 306 1 1617 153 11 36 chr4 82563291 82563572 -101725090 + AluJb SINE Alu 5 278 -34 818 159 6 16 chr4 82563573 82563755 -101724907 + GA-rich Low_complexity Low_complexity 1 180 0 829 129 0 43 chr4 82563772 82563958 -101724704 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 1284 16 11 27 chr4 82563969 82564152 -101724510 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 186 297 169 25 chr4 82564433 82564551 -101724111 - L2 LINE L2 -220 3052 2918 202 319 17 35 chr4 82564677 82564793 -101723869 - L2 LINE L2 -557 2757 2644 533 252 171 36 chr4 82564835 82565057 -101723605 + Charlie8 DNA MER1_type 35 286 -2131 228 237 26 13 chr4 82565118 82565194 -101723468 + Charlie8 DNA MER1_type 2335 2411 -6 748 208 6 25 chr4 82565669 82565828 -101722834 + MER106B DNA MER1_type 904 1059 0 8132 26 0 5 chr4 82566703 82567659 -101721003 - L1PA3 LINE L1 -3 6152 5197 602 40 0 0 chr4 82567659 82567735 -101720927 + L1P LINE L1 4870 4945 -1201 452 111 0 0 chr4 82567835 82567898 -101720764 - AluJ/FLAM SINE Alu -245 67 5 689 149 17 114 chr4 82567900 82568075 -101720587 + L1MB3 LINE L1 6026 6183 0 181 319 112 0 chr4 82568107 82568223 -101720439 - MIR SINE MIR -14 248 120 785 190 0 0 chr4 82568225 82568346 -101720316 + AluJb SINE Alu 3 123 -189 223 305 0 0 chr4 82568380 82568439 -101720223 - MIR SINE MIR -73 135 77 1989 144 7 3 chr4 82568474 82568773 -101719889 + AluSq SINE Alu 1 300 -13 538 266 203 0 chr4 82568828 82568986 -101719676 - MIR SINE MIR -38 224 35 1991 159 93 0 chr4 82569591 82569925 -101718737 - MER47A DNA MER2_type -1 365 1 2347 101 0 3 chr4 82569990 82570298 -101718364 - AluSx SINE Alu -5 307 1 1015 259 34 86 chr4 82570409 82570955 -101717707 - L2 LINE L2 -41 3272 2754 2031 125 16 13 chr4 82571164 82571475 -101717187 + AluSx SINE Alu 1 312 0 27 0 0 0 chr4 82571877 82571904 -101716758 + AT_rich Low_complexity Low_complexity 1 27 0 844 146 77 118 chr4 82572557 82572777 -101715885 - MER20 DNA MER1_type 0 219 9 12962 113 12 12 chr4 82573507 82576130 -101712532 - L1P3 LINE L1 -3828 2633 1 705 276 20 15 chr4 82576177 82576380 -101712282 - MLT1I LTR MaLR -196 213 10 475 295 0 64 chr4 82576578 82576734 -101711928 + MER5B DNA MER1_type 2 147 -31 1876 166 3 43 chr4 82578404 82578729 -101709933 + AluJb SINE Alu 1 312 0 2255 100 0 0 chr4 82578737 82579026 -101709636 + AluSx SINE Alu 21 309 -3 196 276 26 40 chr4 82579505 82579581 -101709081 - L2 LINE L2 -8 3264 3190 354 344 90 0 chr4 82579674 82579796 -101708866 + LTR16C LTR ERVL 71 203 -288 204 125 0 0 chr4 82580339 82580371 -101708291 + (CAT)n Simple_repeat Simple_repeat 1 32 0 2283 86 0 23 chr4 82582223 82582527 -101706135 + AluSq SINE Alu 1 297 -16 54 29 0 0 chr4 82582763 82582831 -101705831 + AT_rich Low_complexity Low_complexity 1 68 0 1587 165 16 0 chr4 82582936 82583184 -101705478 - AluJb SINE Alu -60 252 1 2068 119 6 44 chr4 82583529 82583847 -101704815 - AluSx SINE Alu -6 306 1 1651 165 14 17 chr4 82584427 82584724 -101703938 - AluJb SINE Alu -16 296 1 2302 81 0 7 chr4 82585545 82585841 -101702821 - AluSx SINE Alu -18 294 1 405 313 119 0 chr4 82586721 82586922 -101701740 + Charlie8 DNA MER1_type 13 237 -2180 237 281 0 0 chr4 82586999 82587056 -101701606 - MIR SINE MIR -57 151 95 238 220 0 0 chr4 82587326 82587385 -101701277 - HAL1 LINE L1 -140 2367 2309 204 206 0 0 chr4 82587438 82587472 -101701190 + (CACG)n Simple_repeat Simple_repeat 3 36 0 2971 269 76 68 chr4 82587472 82588635 -101700027 - HAL1 LINE L1 -285 2222 1069 786 187 0 8 chr4 82588635 82588769 -101699893 - FLAM_C SINE Alu 0 133 1 2971 269 76 68 chr4 82588769 82588822 -101699840 - HAL1 LINE L1 -1438 1069 1018 2062 124 88 22 chr4 82588822 82589232 -101699430 - L1MA5A LINE L1 0 6297 5861 2971 269 76 68 chr4 82589232 82590206 -101698456 - HAL1 LINE L1 -1489 1018 14 2783 214 94 25 chr4 82591199 82592039 -101696623 + L1MD2 LINE L1 5448 6345 -14 2383 100 13 0 chr4 82593186 82593495 -101695167 - AluSq SINE Alu 0 313 1 513 362 31 16 chr4 82594070 82594454 -101694208 - ERVL LTR ERVL -1459 4305 3916 1396 208 69 31 chr4 82594454 82594844 -101693818 + MLT1C LTR MaLR 1 405 -62 873 179 0 0 chr4 82594844 82594978 -101693684 - AluJo SINE Alu -178 134 1 485 293 24 0 chr4 82595044 82595208 -101693454 - ERVL LTR ERVL -1396 3600 3433 1175 253 48 39 chr4 82595239 82595918 -101692744 + L1ME LINE L1 5135 5822 -348 1683 33 0 0 chr4 82596008 82596218 -101692444 - L1HS LINE L1 -2196 3950 3741 * 11805 13 0 0 chr4 82596208 82598405 -101690257 + L1HS LINE L1 3960 6155 0 186 43 0 0 chr4 82598405 82598428 -101690234 + (A)n Simple_repeat Simple_repeat 1 23 0 222 118 0 0 chr4 82598673 82598707 -101689955 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 298 279 114 43 chr4 82599141 82599281 -101689381 - L2 LINE L2 0 3313 3164 33 25 0 0 chr4 82599895 82599935 -101688727 + AT_rich Low_complexity Low_complexity 1 40 0 556 275 151 9 chr4 82600227 82600445 -101688217 - MIR SINE MIR -13 249 1 246 347 74 0 chr4 82601530 82601625 -101687037 + MER5B DNA MER1_type 3 104 -74 1579 185 153 20 chr4 82601745 82602160 -101686502 - MER69 DNA AcHobo -3 2523 2026 2264 147 10 8 chr4 82602160 82602549 -101686113 - MLT1B LTR MaLR 0 390 1 1579 185 153 20 chr4 82602549 82602642 -101686020 - MER69 DNA AcHobo -500 2026 1947 297 182 30 0 chr4 82602750 82602849 -101685813 + (TA)n Simple_repeat Simple_repeat 1 102 0 785 274 39 43 chr4 82602930 82603185 -101685477 - MIR SINE MIR -1 261 8 182 329 26 40 chr4 82603199 82603275 -101685387 - L2 LINE L2 -221 3051 2977 253 276 0 0 chr4 82603511 82603569 -101685093 + (TG)n Simple_repeat Simple_repeat 1 58 0 1342 215 99 23 chr4 82603722 82604011 -101684651 - MER63B DNA MER1_type -637 425 97 2453 177 265 48 chr4 82604011 82604849 -101683813 + LTR28 LTR ERV1 1 1020 0 1342 215 99 23 chr4 82604849 82604954 -101683708 - MER63B DNA MER1_type -965 97 1 483 309 196 57 chr4 82604972 82605701 -101682961 - L2 LINE L2 -783 2531 1670 2261 109 0 13 chr4 82605701 82606012 -101682650 - AluSx SINE Alu -5 307 1 483 309 196 57 chr4 82606012 82606119 -101682543 - L2 LINE L2 -1644 1670 1579 414 266 168 44 chr4 82606128 82606492 -101682170 + MLT1H LTR MaLR 97 505 -44 322 305 92 15 chr4 82607122 82607253 -101681409 + MIR SINE MIR 8 148 -114 2198 107 21 0 chr4 82607656 82607947 -101680715 + AluSx SINE Alu 1 297 -15 307 301 121 69 chr4 82608917 82609090 -101679572 + MIR SINE MIR 9 190 -72 1264 262 96 3 chr4 82609646 82610078 -101678584 + MLT1H1 LTR MaLR 1 517 -38 225 254 18 0 chr4 82610243 82610298 -101678364 - MIR SINE MIR -11 251 196 459 278 69 6 chr4 82610957 82611119 -101677543 + MER69A DNA AcHobo 5 176 -1 633 121 0 0 chr4 82612058 82612149 -101676513 + FRAM/FAM SINE Alu 1 90 -86 2260 108 3 3 chr4 82612819 82613116 -101675546 - AluSx SINE Alu -15 297 1 2160 113 0 26 chr4 82613702 82614012 -101674650 + AluSx SINE Alu 1 302 -10 27 49 0 0 chr4 82614927 82614968 -101673694 + AT_rich Low_complexity Low_complexity 1 41 0 243 272 120 0 chr4 82616231 82616356 -101672306 + L2 LINE L2 2839 2978 -335 456 19 0 0 chr4 82616385 82616438 -101672224 + (CA)n Simple_repeat Simple_repeat 2 54 0 2104 128 3 3 chr4 82616723 82617019 -101671643 + AluSx SINE Alu 1 296 -16 23 68 0 0 chr4 82617456 82617500 -101671162 + AT_rich Low_complexity Low_complexity 1 44 0 2239 178 57 5 chr4 82618109 82618547 -101670115 + LOR1b LTR ERV1 1 461 0 241 244 203 32 chr4 82618566 82618630 -101670032 - MIR SINE MIR -2 260 208 2005 158 0 0 chr4 82618630 82618921 -101669741 + AluSx SINE Alu 6 296 -16 241 244 203 32 chr4 82618921 82618979 -101669683 - MIR SINE MIR -54 208 117 711 273 107 9 chr4 82618996 82619212 -101669450 - MIR SINE MIR -21 241 5 698 269 44 32 chr4 82620169 82620418 -101668244 - MIR SINE MIR -9 253 2 674 250 98 15 chr4 82620559 82620763 -101667899 - MIR SINE MIR -1 261 41 294 95 0 0 chr4 82621918 82621960 -101666702 + (TTTTC)n Simple_repeat Simple_repeat 4 45 0 313 241 83 28 chr4 82623738 82623846 -101664816 - MIR SINE MIR -11 251 138 791 279 22 60 chr4 82623853 82624122 -101664540 + MIR SINE MIR 3 261 -1 207 317 106 0 chr4 82624116 82624220 -101664442 - MIR SINE MIR -111 151 37 * 231 286 114 0 chr4 82624305 82624375 -101664287 + L2 LINE L2 3155 3232 -40 203 0 0 36 chr4 82624406 82624434 -101664228 + (TTTAA)n Simple_repeat Simple_repeat 2 28 0 217 154 58 0 chr4 82624463 82624515 -101664147 + A-rich Low_complexity Low_complexity 1 55 0 245 363 19 19 chr4 82624558 82624715 -101663947 - MIR SINE MIR -47 215 59 2144 133 39 26 chr4 82626233 82626618 -101662044 - MLT1B LTR MaLR 0 390 1 21 36 0 0 chr4 82627085 82627113 -101661549 + AT_rich Low_complexity Low_complexity 1 28 0 201 59 29 0 chr4 82627203 82627237 -101661425 + (TTTTA)n Simple_repeat Simple_repeat 2 180 0 1994 83 72 0 chr4 82627237 82627502 -101661160 - AluSx SINE Alu -28 284 1 893 297 88 10 chr4 82627613 82627919 -101660743 - MLT1I LTR MaLR -22 387 58 1685 211 39 43 chr4 82628235 82628700 -101659962 - MLT1C LTR MaLR 0 467 5 1297 184 76 113 chr4 82628704 82629139 -101659523 - MLT1C-int LTR MaLR 0 1371 953 2005 168 60 3 chr4 82629192 82629561 -101659101 - MLT1B LTR MaLR 0 390 1 1176 148 155 11 chr4 82629578 82629849 -101658813 + MER4A LTR ERV1 1 310 -354 508 213 250 17 chr4 82629919 82630159 -101658503 + MER4C LTR ERV1 152 447 -18 1779 193 0 6 chr4 82630180 82630491 -101658171 - AluJb SINE Alu -2 310 2 4555 169 16 19 chr4 82630563 82631342 -101657320 - MLT1C-int LTR MaLR -491 880 103 2083 144 3 0 chr4 82631342 82631647 -101657015 + AluSx SINE Alu 1 306 -6 4555 169 16 19 chr4 82631647 82631750 -101656912 - MLT1C-int LTR MaLR -1268 103 1 520 267 20 13 chr4 82631750 82631900 -101656762 - MLT1C LTR MaLR 0 467 317 752 256 23 23 chr4 82632302 82632517 -101656145 + MIR SINE MIR 36 250 -12 307 68 0 0 chr4 82632559 82632603 -101656059 - L1P LINE L1 -946 5200 5157 1879 180 0 3 chr4 82632712 82633018 -101655644 - AluJb SINE Alu -7 305 1 807 207 55 37 chr4 82633018 82633346 -101655316 - MER69 DNA AcHobo -722 1804 1471 2641 214 48 24 chr4 82633416 82634044 -101654618 - MER69 DNA AcHobo -1846 680 34 919 55 86 0 chr4 82634044 82634172 -101654490 - MER85 DNA T2_type 0 139 1 2641 214 48 24 chr4 82634172 82634207 -101654455 - MER69 DNA AcHobo -2492 34 1 330 159 29 0 chr4 82634573 82634642 -101654020 - MLT1A1 LTR MaLR -4 361 291 32 0 0 0 chr4 82634644 82634676 -101653986 + AT_rich Low_complexity Low_complexity 1 32 0 2519 70 0 3 chr4 82634676 82635004 -101653658 - L1PB1 LINE L1 -1 6150 5824 1244 170 38 75 chr4 82635008 82635326 -101653336 - MLT1A1 LTR MaLR -59 306 1 2341 88 3 7 chr4 82635400 82635707 -101652955 - AluSg SINE Alu -4 306 1 266 250 120 20 chr4 82635710 82635810 -101652852 - MLT1J2 LTR MaLR -299 151 42 918 188 200 57 chr4 82635969 82636487 -101652175 - MLT1E3 LTR MaLR -1 623 1 6704 60 26 0 chr4 82637157 82638107 -101650555 + L1PA7 LINE L1 5175 6146 -8 2746 164 44 11 chr4 82638141 82638666 -101649996 - MER34 LTR ERV1 0 542 1 185 95 63 32 chr4 82639362 82639425 -101649237 + A-rich Low_complexity Low_complexity 6 70 0 2971 246 57 29 chr4 82639428 82640473 -101648189 - L1MC4 LINE L1 -49 7993 6919 1482 104 0 14 chr4 82640481 82640701 -101647961 - AluY SINE Alu -12 299 83 1019 95 36 42 chr4 82640717 82640885 -101647777 - AluSc SINE Alu -142 167 1 2431 57 0 3 chr4 82640898 82641196 -101647466 - AluY SINE Alu -14 297 1 440 197 25 167 chr4 82641197 82641395 -101647267 - L1MC4 LINE L1 -1116 6926 6757 811 278 63 0 chr4 82641403 82641608 -101647054 + MIR SINE MIR 45 262 0 2112 103 7 20 chr4 82641838 82642138 -101646524 - AluSx SINE Alu -15 297 2 227 309 12 12 chr4 82643850 82643931 -101644731 - MIR SINE MIR -108 154 74 287 273 0 0 chr4 82643942 82644008 -101644654 - MIR SINE MIR -1 261 196 2468 58 0 3 chr4 82644010 82644318 -101644344 - AluY SINE Alu -4 307 1 22 0 0 0 chr4 82644890 82644912 -101643750 + AT_rich Low_complexity Low_complexity 1 22 0 247 290 83 47 chr4 82644990 82645159 -101643503 - MER117 DNA MER1_type -9 188 14 1153 116 0 26 chr4 82645160 82645349 -101643313 + L1MD2 LINE L1 6175 6358 -1 235 240 40 100 chr4 82645437 82645512 -101643150 - MIR3 SINE MIR -17 191 121 2388 39 4 0 chr4 82645512 82645835 -101642827 + AluY SINE Alu 1 324 0 235 240 40 100 chr4 82645835 82645858 -101642804 - MIR3 SINE MIR -87 121 98 215 258 76 30 chr4 82645916 82645982 -101642680 - L2 LINE L2 -12 3260 3192 723 44 0 0 chr4 82646316 82646407 -101642255 + (CTATT)n Simple_repeat Simple_repeat 5 95 0 256 231 0 0 chr4 82646420 82646472 -101642190 + MER112 DNA MER1_type 201 252 -8 195 239 22 0 chr4 82646994 82647040 -101641622 - MIR SINE MIR -99 163 117 281 320 20 0 chr4 82647223 82647323 -101641339 - MIR SINE MIR -12 250 149 402 296 82 38 chr4 82647722 82647881 -101640781 - MER5A DNA MER1_type 0 189 13 2125 134 0 3 chr4 82648019 82648317 -101640345 + AluSx SINE Alu 1 297 -15 9016 91 3 11 chr4 82648429 82649784 -101638878 + L1PA8 LINE L1 3404 4747 -1399 456 252 0 0 chr4 82649784 82649907 -101638755 + (CACTA)n Simple_repeat Simple_repeat 3 125 0 6963 62 9 0 chr4 82649907 82651351 -101637311 + L1PA8 LINE L1 4716 6170 -2 792 279 88 24 chr4 82651487 82651817 -101636845 + MLT1J2 LTR MaLR 67 417 -33 280 230 125 72 chr4 82652436 82652588 -101636074 - MER112 DNA MER1_type -5 255 96 461 202 149 0 chr4 82652621 82652735 -101635927 + MER82 DNA MER2_type 2 132 -521 1895 118 46 52 chr4 82652745 82653229 -101635433 + LTR26 LTR ERV1 2 600 -3 2062 186 30 71 chr4 82653232 82653289 -101635373 + MER82 DNA MER2_type 138 196 -457 233 56 0 28 chr4 82653289 82653325 -101635337 + (TA)n Simple_repeat Simple_repeat 2 36 0 2062 186 30 71 chr4 82653325 82653804 -101634858 + MER82 DNA MER2_type 196 652 -1 1235 208 83 3 chr4 82653829 82654141 -101634521 - MER2 DNA MER2_type -6 339 3 297 0 0 0 chr4 82654144 82654177 -101634485 + (CA)n Simple_repeat Simple_repeat 2 34 0 230 261 0 43 chr4 82654180 82654249 -101634413 - MER112 DNA MER1_type -193 67 2 5622 151 22 22 chr4 82654554 82656623 -101632039 + L1MA4A LINE L1 4270 6296 -7 2270 90 3 0 chr4 82657302 82657592 -101631070 - AluSc SINE Alu -18 291 1 818 71 0 0 chr4 82657813 82657925 -101630737 + L1PB1 LINE L1 6040 6151 0 1886 175 80 10 chr4 82658212 82658624 -101630038 - L1MA4 LINE L1 0 6300 5860 11786 167 11 11 chr4 82658668 82662246 -101626416 - L1PB2 LINE L1 0 6151 2569 6214 118 88 11 chr4 82662244 82663592 -101625070 + L1PBb LINE L1 740 2189 -4015 * 1699 175 34 20 chr4 82663607 82663956 -101624706 + MLT1A1 LTR MaLR 1 354 -11 21 36 0 0 chr4 82664007 82664035 -101624627 + AT_rich Low_complexity Low_complexity 1 28 0 1089 258 25 34 chr4 82665554 82665876 -101622786 - MLT2D LTR ERVL 0 414 96 636 168 42 48 chr4 82666479 82666495 -101622167 - L1MA10 LINE L1 0 6334 6319 538 246 50 64 chr4 82666495 82666715 -101621947 - L1ME1 LINE L1 -5 6161 5945 801 224 151 5 chr4 82666724 82666943 -101621719 + MLT1E1 LTR MaLR 1 251 -403 3228 201 45 181 chr4 82666944 82667569 -101621093 - L1M4 LINE L1 -1443 4703 3995 229 149 0 90 chr4 82667569 82667636 -101621026 + HSMAR1 DNA Mariner 1 61 -1226 230 83 21 42 chr4 82667643 82667656 -101621006 - MADE1 DNA Mariner -28 52 40 3854 18 11 0 chr4 82667656 82668108 -101620554 + L1PA4 LINE L1 5699 6155 0 230 83 21 42 chr4 82668108 82668142 -101620520 - MADE1 DNA Mariner -40 40 6 3228 201 45 181 chr4 82668142 82668327 -101620335 - L1M4 LINE L1 -2157 3989 3780 2343 92 6 13 chr4 82668327 82668641 -101620021 - AluSx SINE Alu 0 312 1 3228 201 45 181 chr4 82668641 82668870 -101619792 - L1M4 LINE L1 -2366 3780 3522 2501 48 0 0 chr4 82668870 82669162 -101619500 - AluY SINE Alu -14 297 6 3228 201 45 181 chr4 82669162 82669490 -101619172 - L1M4 LINE L1 -2624 3522 3151 236 111 0 0 chr4 82669490 82669526 -101619136 - tRNA-Gly-GGG tRNA tRNA -38 36 1 3228 201 45 181 chr4 82669526 82670516 -101618146 - L1M4 LINE L1 -2995 3151 2529 203 356 69 0 chr4 82673281 82673382 -101615280 - L2 LINE L2 -49 3223 3116 344 296 158 13 chr4 82673496 82673648 -101615014 - MIR SINE MIR -77 185 12 435 149 0 0 chr4 82674252 82674326 -101614336 + (TG)n Simple_repeat Simple_repeat 2 75 0 198 0 0 0 chr4 82675235 82675257 -101613405 + (TG)n Simple_repeat Simple_repeat 1 22 0 273 354 0 0 chr4 82677536 82677711 -101610951 + (TAG)n Simple_repeat Simple_repeat 1 175 0 438 295 0 0 chr4 82677800 82677992 -101610670 + (CAG)n Simple_repeat Simple_repeat 1 192 0 326 329 0 0 chr4 82677959 82678044 -101610618 + (TAG)n Simple_repeat Simple_repeat 1 85 0 * 189 286 0 0 chr4 82678046 82678109 -101610553 + (CAG)n Simple_repeat Simple_repeat 1 63 0 480 299 0 0 chr4 82678121 82678298 -101610364 + (CAG)n Simple_repeat Simple_repeat 1 177 0 402 318 0 0 chr4 82678329 82678508 -101610154 + (CAG)n Simple_repeat Simple_repeat 2 180 0 291 308 0 0 chr4 82678529 82678649 -101610013 + (CAG)n Simple_repeat Simple_repeat 1 120 0 534 299 0 0 chr4 82678662 82679339 -101609323 + (CAG)n Simple_repeat Simple_repeat 1 677 0 432 301 0 0 chr4 82679352 82679518 -101609144 + (CAG)n Simple_repeat Simple_repeat 2 167 0 2283 82 7 0 chr4 82680530 82680824 -101607838 + AluSc SINE Alu 7 302 -7 460 278 8 0 chr4 82681161 82681294 -101607368 + MER94 DNA DNA 1 134 0 23 78 0 0 chr4 82682010 82682061 -101606601 + AT_rich Low_complexity Low_complexity 1 51 0 229 315 50 28 chr4 82682260 82682441 -101606221 - L1MC/D LINE L1 -1899 5909 5725 433 220 90 86 chr4 82682788 82683043 -101605619 - MER112 DNA MER1_type 0 256 1 191 36 36 0 chr4 82683149 82683177 -101605485 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 22 70 0 0 chr4 82683482 82683525 -101605137 + AT_rich Low_complexity Low_complexity 1 43 0 2532 199 87 16 chr4 82684580 82685202 -101603460 - LTR65 LTR ERV1 -3 666 1 1920 154 21 24 chr4 82685274 82685612 -101603050 - MER1B DNA MER1_type 0 337 1 2869 106 30 0 chr4 82686183 82686619 -101602043 - L1PA16 LINE L1 -10 6156 5708 504 207 50 65 chr4 82687170 82687270 -101601392 + MER5C DNA MER1_type 1 101 -223 2151 116 7 3 chr4 82687270 82687572 -101601090 - AluSx SINE Alu -9 303 1 504 207 50 65 chr4 82687572 82687733 -101600929 + MER5C DNA MER1_type 101 321 -3 2241 146 7 53 chr4 82687754 82688171 -101600491 + MER57A LTR ERV1 2 399 -4 569 228 53 53 chr4 82689242 82689431 -101599231 - MER5A DNA MER1_type 0 189 1 1853 167 9 89 chr4 82689826 82689985 -101598677 + MLT2D LTR ERVL 1 171 -243 2119 109 21 64 chr4 82689985 82690182 -101598480 - THE1B LTR MaLR -2 362 187 2209 87 27 3 chr4 82690182 82690481 -101598181 - AluSc SINE Alu -3 306 1 2119 109 21 64 chr4 82690481 82690660 -101598002 - THE1B LTR MaLR -177 187 2 1853 167 9 89 chr4 82690660 82690948 -101597714 + MLT2D LTR ERVL 171 412 -2 246 289 9 26 chr4 82691071 82691185 -101597477 - MER103 DNA DNA -52 114 3 307 244 106 14 chr4 82691461 82691617 -101597045 + MLT1F1 LTR MaLR 323 508 -59 414 0 0 0 chr4 82691617 82691663 -101596999 + (TAA)n Simple_repeat Simple_repeat 3 48 0 307 244 106 14 chr4 82691663 82691695 -101596967 + MLT1F1 LTR MaLR 508 536 -31 878 158 15 41 chr4 82691696 82691892 -101596770 + MLT1A1 LTR MaLR 1 191 -174 317 309 111 0 chr4 82691896 82692022 -101596640 + L2 LINE L2 3133 3272 0 2506 66 3 3 chr4 82692120 82692423 -101596239 + AluSq SINE Alu 1 303 -10 41 0 0 0 chr4 82692423 82692464 -101596198 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr4 82692683 82692708 -101595954 + AT_rich Low_complexity Low_complexity 1 25 0 1738 86 0 9 chr4 82692928 82693181 -101595481 + AluSc SINE Alu 71 309 0 2055 130 7 3 chr4 82693197 82693497 -101595165 + AluJb SINE Alu 1 301 -11 918 133 0 0 chr4 82693877 82694005 -101594657 + AluSq/x SINE Alu 1 128 -185 195 42 0 0 chr4 82694005 82694029 -101594633 + (TAA)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chr4 82694191 82694219 -101594443 + AT_rich Low_complexity Low_complexity 1 28 0 810 172 0 2 chr4 82694314 82694549 -101594113 + AluJ SINE Alu 1 291 -21 292 237 26 0 chr4 82695636 82695712 -101592950 - MER3 DNA MER1_type -131 78 1 618 277 12 6 chr4 82696256 82696422 -101592240 + MIR SINE MIR 53 219 -43 26 30 0 0 chr4 82697516 82697549 -101591113 + AT_rich Low_complexity Low_complexity 1 33 0 1700 170 4 7 chr4 82697704 82697981 -101590681 - AluJo SINE Alu -24 288 13 4374 121 4 17 chr4 82698002 82698705 -101589957 - L1MA2 LINE L1 0 6304 5611 454 260 40 6 chr4 82698788 82698961 -101589701 - L1MC5 LINE L1 -33 7928 7750 664 124 0 0 chr4 82698984 82699081 -101589581 - L1PA8 LINE L1 -6359 102 6 28299 109 29 27 chr4 82699085 82701116 -101587546 + L1PA8 LINE L1 100 2127 -4360 590 60 0 0 chr4 82701116 82701200 -101587462 - L1PA3 LINE L1 -4 6151 6068 28299 109 29 27 chr4 82701200 82705505 -101583157 + L1PA8 LINE L1 2127 6487 0 829 150 7 0 chr4 82705509 82705649 -101583013 + L1PA16 LINE L1 6023 6163 -3 742 209 37 54 chr4 82705663 82705960 -101582702 - L1MC5 LINE L1 -270 7691 7400 566 185 139 12 chr4 82705969 82706142 -101582520 - L1MC5 LINE L1 -777 7184 6990 363 23 0 0 chr4 82706160 82706204 -101582458 + (TG)n Simple_repeat Simple_repeat 1 44 0 1755 152 70 0 chr4 82706243 82706513 -101582149 + AluJo SINE Alu 1 289 -23 247 306 30 32 chr4 82706539 82706747 -101581915 - L1ME3 LINE L1 0 6170 5961 706 239 67 62 chr4 82706836 82707224 -101581438 - L1MC5 LINE L1 -428 7533 7141 2038 120 0 3 chr4 82707224 82707507 -101581155 - AluSg SINE Alu -28 282 1 706 239 67 62 chr4 82707507 82707524 -101581138 - L1MC5 LINE L1 -820 7141 7126 244 178 20 33 chr4 82707665 82707817 -101580845 + (TA)n Simple_repeat Simple_repeat 1 150 0 2786 172 6 23 chr4 82707817 82708361 -101580301 - MLT2B3 LTR ERVL -34 506 1 890 229 137 67 chr4 82708362 82708839 -101579823 - L1MC5 LINE L1 -832 7129 6680 1847 112 4 8 chr4 82708944 82709204 -101579458 - AluJb SINE Alu -21 291 33 616 314 36 36 chr4 82709575 82709996 -101578666 - HAL1b LINE L1 -708 640 220 317 313 120 42 chr4 82710034 82710293 -101578369 - HAL1 LINE L1 -1235 1272 994 22 0 0 0 chr4 82710403 82710425 -101578237 + AT_rich Low_complexity Low_complexity 1 22 0 305 246 79 8 chr4 82711056 82711258 -101577404 + MLT1G1 LTR MaLR 87 362 -233 260 230 0 0 chr4 82711319 82711393 -101577269 + MLT1G1 LTR MaLR 475 548 -7 182 242 0 132 chr4 82711596 82711687 -101576975 - L2 LINE L2 -478 2836 2758 267 311 101 42 chr4 82711935 82712054 -101576608 - L2 LINE L2 0 3272 3147 22 35 0 0 chr4 82713475 82713504 -101575158 + AT_rich Low_complexity Low_complexity 1 29 0 29 60 0 0 chr4 82713662 82713712 -101574950 + AT_rich Low_complexity Low_complexity 1 50 0 36 53 0 0 chr4 82714217 82714274 -101574388 + AT_rich Low_complexity Low_complexity 1 57 0 217 193 53 35 chr4 82714364 82714421 -101574241 + L2 LINE L2 3256 3313 0 315 0 0 0 chr4 82716058 82716093 -101572569 + (TA)n Simple_repeat Simple_repeat 1 35 0 1069 175 0 0 chr4 82716094 82716265 -101572397 - AluJb SINE Alu -21 291 121 482 267 27 13 chr4 82716282 82716432 -101572230 - MER5B DNA MER1_type -26 152 1 3957 135 20 5 chr4 82716455 82717092 -101571570 - MER39B LTR ERV1 -2 651 5 1945 168 47 54 chr4 82717108 82717784 -101570878 - MER4A LTR ERV1 0 695 1 339 65 0 0 chr4 82718328 82718374 -101570288 + (TG)n Simple_repeat Simple_repeat 1 46 0 2172 181 12 5 chr4 82718618 82719044 -101569618 - L1MB8 LINE L1 -11 6167 5739 954 222 0 0 chr4 82719423 82719603 -101569059 + MER5A DNA MER1_type 1 180 -9 25 0 0 0 chr4 82719762 82719787 -101568875 + AT_rich Low_complexity Low_complexity 1 25 0 873 256 32 9 chr4 82720187 82720406 -101568256 - MIR SINE MIR -34 228 5 330 298 8 53 chr4 82721274 82721405 -101567257 - MIR SINE MIR -46 216 92 428 231 0 0 chr4 82721413 82721491 -101567171 + MER81 DNA DNA 1 78 -36 216 0 0 0 chr4 82723211 82723235 -101565427 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1872 96 56 46 chr4 82723689 82723871 -101564791 - AluSc SINE Alu -3 306 118 2322 71 6 6 chr4 82723871 82724182 -101564480 - AluY SINE Alu 0 311 1 1872 96 56 46 chr4 82724182 82724302 -101564360 - AluSc SINE Alu -191 118 1 272 288 0 50 chr4 82726253 82726333 -101562329 - L2 LINE L2 0 3313 3238 2034 128 37 0 chr4 82727517 82727814 -101560848 + AluSq SINE Alu 1 308 -5 360 274 37 58 chr4 82727894 82727916 -101560746 - MER5A DNA MER1_type -32 146 125 351 0 0 0 chr4 82727916 82727955 -101560707 + (TG)n Simple_repeat Simple_repeat 2 40 0 360 274 37 58 chr4 82727955 82728069 -101560593 - MER5A DNA MER1_type -53 125 18 1799 130 13 5 chr4 82728748 82729190 -101559472 - MER1A DNA MER1_type 0 529 46 1038 140 0 6 chr4 82729819 82729997 -101558665 - L1MA5A LINE L1 -10 6287 6111 300 241 48 12 chr4 82729997 82730080 -101558582 - L1MC4 LINE L1 -1343 6699 6614 2133 70 0 14 chr4 82730113 82730400 -101558262 - L1PA13 LINE L1 -1 6162 5880 3699 99 28 0 chr4 82730407 82730974 -101557688 - L1MA5A LINE L1 -182 6115 5533 186 305 54 78 chr4 82731296 82731463 -101557199 - L2 LINE L2 -337 2977 2815 186 364 23 0 chr4 82731623 82731711 -101556951 - MIR SINE MIR -125 137 48 * 193 281 47 0 chr4 82731690 82731754 -101556908 - L2 LINE L2 -529 2785 2719 29 28 0 0 chr4 82733252 82733288 -101555374 + AT_rich Low_complexity Low_complexity 1 36 0 616 277 16 21 chr4 82733321 82733509 -101555153 + MLT1J LTR MaLR 1 187 -324 7195 184 19 14 chr4 82733844 82735535 -101553127 + L1PB4 LINE L1 3022 4721 -1425 1982 118 47 94 chr4 82735535 82735917 -101552745 - THE1B LTR MaLR 0 364 1 10376 100 43 1 chr4 82735923 82737433 -101551229 - THE1B-int LTR MaLR -6 1574 1 2055 113 49 29 chr4 82737440 82737785 -101550877 - THE1B LTR MaLR -12 352 1 2377 193 34 27 chr4 82737785 82738092 -101550570 + L1PB4 LINE L1 4717 5020 -1143 2231 120 0 0 chr4 82738092 82738391 -101550271 + AluSc SINE Alu 1 299 -10 2377 193 34 27 chr4 82738391 82738719 -101549943 + L1PB4 LINE L1 5020 5358 -805 2748 141 31 14 chr4 82738833 82739345 -101549317 + L1PB4 LINE L1 5367 5887 -269 300 288 36 18 chr4 82739448 82739559 -101549103 - L1MEc LINE L1 -3276 2939 2827 258 213 13 0 chr4 82739568 82739643 -101549019 - L1M4 LINE L1 -1663 4483 4408 2087 123 0 0 chr4 82739680 82739987 -101548675 + AluSx SINE Alu 1 307 0 249 277 0 0 chr4 82739987 82740052 -101548610 - L1MEc LINE L1 -3358 2857 2793 1364 234 79 39 chr4 82740058 82740769 -101547893 - L1MEc LINE L1 -3476 2739 2043 537 223 151 7 chr4 82741088 82741227 -101547435 - MER5B DNA MER1_type -3 175 17 3028 163 15 0 chr4 82743852 82744386 -101544276 + MER34 LTR ERV1 1 542 0 2222 114 3 7 chr4 82744640 82744948 -101543714 - AluSp SINE Alu -6 307 1 2139 233 77 21 chr4 82746854 82747416 -101541246 - MLT1E LTR MaLR 0 593 1 333 324 84 36 chr4 82747658 82747933 -101540729 + L2 LINE L2 1327 1614 -1700 1649 173 0 85 chr4 82748044 82748385 -101540277 - AluJb SINE Alu 0 312 1 2903 256 121 53 chr4 82748438 82749939 -101538723 + L2 LINE L2 1686 3284 -29 1983 113 7 3 chr4 82750114 82750396 -101538266 - AluSx SINE Alu -8 304 22 278 358 65 32 chr4 82750536 82750782 -101537880 + L2 LINE L2 2286 2539 -775 202 333 95 0 chr4 82750882 82750966 -101537696 + L2 LINE L2 2686 2777 -537 327 368 71 74 chr4 82751077 82751181 -101537481 + L2 LINE L2 2893 2996 -276 2010 134 3 0 chr4 82751181 82751487 -101537175 - AluSx SINE Alu 0 307 1 327 368 71 74 chr4 82751487 82751745 -101536917 + L2 LINE L2 2996 3255 -17 2187 118 0 3 chr4 82753153 82753450 -101535212 - AluSg SINE Alu -14 296 1 398 278 83 65 chr4 82753609 82753825 -101534837 - MIR SINE MIR -37 225 6 201 231 0 0 chr4 82753895 82753934 -101534728 + (TG)n Simple_repeat Simple_repeat 2 40 0 514 288 24 33 chr4 82753952 82754164 -101534498 - LTR33 LTR ERVL -7 514 305 1803 140 16 38 chr4 82754225 82754539 -101534123 + MER1B DNA MER1_type 33 339 0 458 322 7 0 chr4 82754541 82754684 -101533978 - ERVL LTR ERVL -2256 3508 3365 2105 146 30 25 chr4 82754688 82755050 -101533612 + THE1B LTR MaLR 1 364 0 10190 83 8 93 chr4 82755050 82755430 -101533232 + THE1B-int LTR MaLR 1 412 -1168 992 140 0 0 chr4 82755430 82755566 -101533096 + AluSq/x SINE Alu 1 136 -177 2310 119 6 0 chr4 82755566 82755877 -101532785 + AluSq SINE Alu 1 313 0 10190 83 8 93 chr4 82755877 82757086 -101531576 + THE1B-int LTR MaLR 410 1580 0 2219 127 30 22 chr4 82757086 82757447 -101531215 + THE1B LTR MaLR 1 364 0 404 223 19 10 chr4 82758742 82758845 -101529817 - LTR33 LTR ERVL -4 517 414 1835 114 34 4 chr4 82758851 82759113 -101529549 + AluSq SINE Alu 1 270 -43 1038 69 25 6 chr4 82759118 82759278 -101529384 + (GAAA)n Simple_repeat Simple_repeat 3 165 0 298 138 0 31 chr4 82759413 82759478 -101529184 + (GGGA)n Simple_repeat Simple_repeat 4 66 0 502 261 118 37 chr4 82759478 82759750 -101528912 - LTR33 LTR ERVL -102 419 126 709 200 22 87 chr4 82761073 82761303 -101527359 - L1ME2 LINE L1 -2 6162 5948 4296 135 55 75 chr4 82761303 82762332 -101526330 - MER52C LTR ERV1 0 1278 270 541 125 0 0 chr4 82762333 82762421 -101526241 - MER52C LTR ERV1 -1176 102 15 1268 181 101 127 chr4 82762423 82762666 -101525996 - L1ME2 LINE L1 -215 5949 5701 848 206 14 73 chr4 82762666 82762885 -101525777 - MER63A DNA MER1_type -4 206 1 1268 181 101 127 chr4 82762885 82763431 -101525231 - L1ME2 LINE L1 -463 5701 5170 466 219 115 115 chr4 82763431 82763769 -101524893 - L1ME2 LINE L1 -1401 4745 4408 440 270 39 45 chr4 82763799 82764136 -101524526 - L1ME2 LINE L1 -2833 3313 2979 2489 113 25 0 chr4 82764292 82764647 -101524015 + THE1B LTR MaLR 1 364 0 10383 92 6 61 chr4 82764647 82766311 -101522351 + THE1B-int LTR MaLR 1 1572 -8 2146 154 31 0 chr4 82766319 82766670 -101521992 + THE1B LTR MaLR 3 364 0 334 238 46 53 chr4 82767708 82767730 -101520932 + MER103 DNA DNA 8 29 -137 1771 196 44 23 chr4 82767730 82768118 -101520544 - MSTD LTR MaLR 0 396 1 334 238 46 53 chr4 82768118 82768246 -101520416 + MER103 DNA DNA 29 157 -9 203 365 26 17 chr4 82768799 82768914 -101519748 + MER5A DNA MER1_type 52 167 -22 406 298 169 19 chr4 82769167 82769486 -101519176 + L2 LINE L2 2173 2539 -775 506 258 23 0 chr4 82770072 82770204 -101518458 + L1ME1 LINE L1 5980 6114 -52 422 259 25 49 chr4 82771608 82771634 -101517028 - L2 LINE L2 0 3313 3288 1642 217 10 0 chr4 82771634 82771924 -101516738 + AluJo SINE Alu 1 293 -19 422 259 25 49 chr4 82771924 82772059 -101516603 - L2 LINE L2 -25 3288 3156 84 65 0 0 chr4 82772080 82772234 -101516428 + AT_rich Low_complexity Low_complexity 1 154 0 1197 138 45 63 chr4 82772265 82772534 -101516128 + MLT1C LTR MaLR 1 264 -203 1936 154 53 8 chr4 82772851 82773208 -101515454 - THE1C LTR MaLR 0 375 3 199 364 114 0 chr4 82773240 82773372 -101515290 + L2 LINE L2 3125 3271 -1 254 238 133 48 chr4 82773579 82773684 -101514978 + MIR SINE MIR 114 227 -35 620 313 89 37 chr4 82773771 82774415 -101514247 - L2 LINE L2 -55 3217 2549 276 279 190 13 chr4 82774535 82774693 -101513969 - L2 LINE L2 -962 2352 2167 932 113 0 8 chr4 82776626 82776759 -101511903 + FLAM_C SINE Alu 2 133 0 2236 82 0 0 chr4 82777697 82777976 -101510686 - AluSc SINE Alu -30 279 1 250 281 16 0 chr4 82778072 82778136 -101510526 + L2 LINE L2 3174 3238 -34 2076 37 30 4 chr4 82778880 82779151 -101509511 - L1PA2 LINE L1 0 6155 5878 4839 133 14 4 chr4 82779151 82779943 -101508719 - L1MA3 LINE L1 -8 6297 5495 631 276 68 74 chr4 82780479 82781063 -101507599 + HAL1b LINE L1 256 836 -512 1514 237 53 38 chr4 82781159 82781741 -101506921 + L1MCa LINE L1 1062 1652 -4774 827 142 0 77 chr4 82781741 82781896 -101506766 + FLAM_C SINE Alu 1 143 0 1643 262 44 22 chr4 82781906 82782915 -101505747 + L1MCa LINE L1 1834 2835 -3591 226 212 127 110 chr4 82783121 82783239 -101505423 + MLT1K LTR MaLR 301 420 -168 717 292 37 120 chr4 82783296 82783417 -101505245 - L2 LINE L2 -43 3270 3141 183 80 0 0 chr4 82783417 82783442 -101505220 + (TG)n Simple_repeat Simple_repeat 1 25 0 717 292 37 120 chr4 82783442 82783779 -101504883 - L2 LINE L2 -172 3141 2850 747 81 0 0 chr4 82783802 82783901 -101504761 - HY3 scRNA scRNA -1 100 2 750 257 18 22 chr4 82783974 82784196 -101504466 - L1MC/D LINE L1 -2091 5717 5497 634 250 80 19 chr4 82784230 82784442 -101504220 - MIR SINE MIR -26 236 12 323 206 0 14 chr4 82784838 82784911 -101503751 - MER52A LTR ERV1 0 1755 1684 * 2920 181 89 140 chr4 82784903 82786055 -101502607 - MER52A LTR ERV1 -559 1196 103 3721 194 33 58 chr4 82786160 82787154 -101501508 - LTR5 LTR ERVK 0 969 1 297 281 144 14 chr4 82787254 82787400 -101501262 - L2 LINE L2 -1648 1666 1502 879 206 0 0 chr4 82787406 82787561 -101501101 + AluJb SINE Alu 136 290 -22 524 268 39 20 chr4 82787567 82787720 -101500942 - L2 LINE L2 -1805 1509 1354 898 296 29 7 chr4 82787742 82788185 -101500477 + L1MC4a LINE L1 2548 3000 -3426 722 281 42 5 chr4 82788190 82788596 -101500066 + L1MC4a LINE L1 3069 3489 -2937 1521 120 16 4 chr4 82789109 82789351 -101499311 - Tigger3(Golem) DNA MER2_type -14 3015 2771 517 144 67 0 chr4 82789346 82789436 -101499226 - Tigger3(Golem) DNA MER2_type -2885 144 49 * 1973 156 0 0 chr4 82789734 82790023 -101498639 - AluJb SINE Alu -22 290 2 539 327 0 6 chr4 82790215 82790377 -101498285 + MER45A DNA AcHobo 5 165 -13 369 325 49 28 chr4 82791191 82791477 -101497185 + L1MC4a LINE L1 4598 4889 -1537 1856 165 24 38 chr4 82791780 82792149 -101496513 - THE1B LTR MaLR 0 364 1 6908 159 17 36 chr4 82792151 82793413 -101495249 - THE1B-int LTR MaLR -2 1578 341 11100 37 4 0 chr4 82793413 82793550 -101495112 - L1PA5 LINE L1 -3 6151 6016 189 0 0 0 chr4 82793550 82793571 -101495091 + (CCCCCT)n Simple_repeat Simple_repeat 2 22 0 11100 37 4 0 chr4 82793571 82795531 -101493131 - L1PA5 LINE L1 -138 6016 4033 1204 107 52 56 chr4 82795531 82795764 -101492898 - THE1C LTR MaLR -143 232 1 27 49 0 0 chr4 82795803 82795844 -101492818 + AT_rich Low_complexity Low_complexity 1 41 0 242 265 49 20 chr4 82796101 82796203 -101492459 + L1MC4a LINE L1 5661 5765 -874 420 317 79 93 chr4 82796213 82796772 -101491890 + L1MC4a LINE L1 5823 6373 -1715 2294 120 29 0 chr4 82796807 82797189 -101491473 - L1PA16 LINE L1 -283 5883 5491 771 204 53 11 chr4 82797191 82797420 -101491242 + L1PA16 LINE L1 5903 6163 0 24 67 0 0 chr4 82797450 82797495 -101491167 + AT_rich Low_complexity Low_complexity 1 45 0 789 151 25 13 chr4 82797737 82797896 -101490766 + L1MB5 LINE L1 6014 6174 0 237 269 26 0 chr4 82801191 82801269 -101487393 + L1MA9 LINE L1 6041 6120 -192 355 260 94 0 chr4 82801433 82801529 -101487133 - MIR SINE MIR -50 212 108 27 29 0 0 chr4 82801866 82801900 -101486762 + AT_rich Low_complexity Low_complexity 1 34 0 2542 140 16 50 chr4 82802034 82802519 -101486143 + Cheshire DNA MER1_type 1701 2169 -251 5566 99 24 19 chr4 82802616 82803362 -101485300 + L1MA3 LINE L1 5391 6144 -161 7035 63 0 0 chr4 82803362 82804451 -101484211 + L1PA7 LINE L1 5062 6151 -3 5566 99 24 19 chr4 82804451 82804611 -101484051 + L1MA3 LINE L1 6144 6302 -3 326 270 115 43 chr4 82804637 82805055 -101483607 - L1MCa LINE L1 -4080 2527 2080 784 269 74 57 chr4 82805084 82805155 -101483507 - L1MCa LINE L1 -4452 1974 1906 1767 108 50 0 chr4 82805155 82805432 -101483230 - L1PA13 LINE L1 0 6163 5873 784 269 74 57 chr4 82805432 82806257 -101482405 - L1MCa LINE L1 -4520 1906 879 991 258 45 15 chr4 82806615 82806949 -101481713 + LTR16A LTR ERVL 14 357 -93 2276 101 3 3 chr4 82807071 82807368 -101481294 - AluSc SINE Alu -12 297 1 378 288 48 7 chr4 82807648 82807919 -101480743 - L1MEc LINE L1 -4620 2024 1743 433 274 48 50 chr4 82808042 82808410 -101480252 - L1MEc LINE L1 -4925 1617 1270 462 299 46 25 chr4 82808428 82808752 -101479910 - L1MEc LINE L1 -5472 1353 1023 294 384 29 24 chr4 82808876 82809287 -101479375 - L1MEc LINE L1 -5947 878 466 398 260 47 8 chr4 82809655 82809782 -101478880 - MLT1J LTR MaLR -377 134 3 213 121 0 0 chr4 82810238 82810271 -101478391 + (TC)n Simple_repeat Simple_repeat 2 34 0 2187 137 0 6 chr4 82810516 82810868 -101477794 - AluSx SINE Alu 0 350 1 235 324 98 0 chr4 82811365 82811467 -101477195 + L2 LINE L2 3134 3245 -27 844 192 124 56 chr4 82811476 82811904 -101476758 - MLT1D LTR MaLR 0 505 49 33 0 0 0 chr4 82812789 82812822 -101475840 + AT_rich Low_complexity Low_complexity 1 33 0 244 300 0 0 chr4 82813271 82813331 -101475331 - MER117 DNA MER1_type -54 143 84 304 300 0 0 chr4 82813836 82813926 -101474736 + MIR SINE MIR 172 261 -1 198 71 0 0 chr4 82813943 82813971 -101474691 + (CAT)n Simple_repeat Simple_repeat 3 30 0 280 284 59 29 chr4 82814140 82814242 -101474420 - MIR SINE MIR -40 222 118 205 255 0 0 chr4 82814464 82814511 -101474151 + CT-rich Low_complexity Low_complexity 5 51 0 1666 171 45 0 chr4 82815268 82815555 -101473107 + AluJo SINE Alu 2 301 -11 21 0 0 0 chr4 82815664 82815685 -101472977 + AT_rich Low_complexity Low_complexity 1 21 0 40767 34 22 1 chr4 82816147 82822173 -101466489 + L1PA2 LINE L1 1 6152 -3 22 0 0 0 chr4 82822173 82822195 -101466467 + AT_rich Low_complexity Low_complexity 1 22 0 1145 261 29 51 chr4 82823952 82824362 -101464300 - LTR16C LTR ERVL 0 491 91 1026 269 35 12 chr4 82824500 82824846 -101463816 + L1MC4 LINE L1 7238 7591 -451 2261 236 37 82 chr4 82824859 82825690 -101462972 - MER21B LTR ERV1 -54 809 16 198 0 0 0 chr4 82825699 82825721 -101462941 + (TA)n Simple_repeat Simple_repeat 1 22 0 189 0 0 0 chr4 82825720 82825741 -101462921 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 217 132 0 0 chr4 82825742 82825780 -101462882 + (TA)n Simple_repeat Simple_repeat 1 38 0 1064 210 74 13 chr4 82825780 82826089 -101462573 + L1MC4 LINE L1 7566 7893 -149 249 219 0 2 chr4 82826100 82826162 -101462500 + L1MC4 LINE L1 7926 8040 -2 522 139 0 0 chr4 82826660 82826746 -101461916 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 1724 144 40 22 chr4 82826748 82827026 -101461636 - AluJb SINE Alu -8 304 22 1607 163 42 25 chr4 82827243 82827526 -101461136 - AluJo SINE Alu -24 288 1 2388 75 0 3 chr4 82828663 82828958 -101459704 - AluY SINE Alu -2 309 16 216 0 0 0 chr4 82931128 82931152 -101357510 + (TG)n Simple_repeat Simple_repeat 1 24 0 216 270 14 27 chr4 82933015 82933089 -101355573 - MIR SINE MIR -46 216 144 181 188 0 0 chr4 82933565 82933597 -101355065 - L2 LINE L2 -2 3270 3239 666 260 57 0 chr4 82934422 82934599 -101354063 + MIR SINE MIR 76 262 0 285 170 0 0 chr4 82934637 82934684 -101353978 - U6 snRNA snRNA -60 47 1 243 0 0 0 chr4 82935491 82935518 -101353144 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 274 281 175 19 chr4 82935527 82935687 -101352975 - MLT1L LTR MaLR 0 615 431 483 108 0 0 chr4 82935948 82936022 -101352640 + FLAM_C SINE Alu 70 143 0 2434 85 0 0 chr4 82936413 82936718 -101351944 + AluY SINE Alu 1 305 -6 249 316 104 30 chr4 82938187 82939017 -101349645 + L1ME LINE L1 4872 5776 -345 1366 268 154 47 chr4 82939037 82939938 -101348724 + L2 LINE L2 2203 3289 -24 2194 103 7 0 chr4 82939938 82940228 -101348434 - AluSx SINE Alu -20 292 1 1366 268 154 47 chr4 82940228 82940256 -101348406 + L2 LINE L2 3289 3313 0 3697 157 17 6 chr4 82940791 82941441 -101347221 - L1MB8 LINE L1 0 6178 5522 2293 104 3 0 chr4 82941471 82941769 -101346893 + AluSg SINE Alu 1 299 -11 617 198 0 0 chr4 82941780 82941896 -101346766 + MIR SINE MIR 147 262 0 230 272 141 41 chr4 82941952 82942105 -101346557 - MER5A DNA MER1_type -11 178 1 230 252 25 134 chr4 82942306 82942425 -101346237 + L2 LINE L2 3001 3106 -166 7099 223 79 49 chr4 82942620 82945037 -101343625 - L1ME1 LINE L1 -5 6161 3820 716 199 8 0 chr4 82945037 82945168 -101343494 - FLAM_A SINE Alu -1 132 1 7099 223 79 49 chr4 82945168 82945300 -101343362 - L1ME1 LINE L1 -2346 3820 3694 481 126 63 0 chr4 82945300 82945395 -101343267 - L1MA9 LINE L1 0 6312 6212 7099 223 79 49 chr4 82945395 82946076 -101342586 - L1ME1 LINE L1 -2472 3694 3035 1370 179 91 46 chr4 82946076 82946405 -101342257 - MER2 DNA MER2_type 0 344 1 7099 223 79 49 chr4 82946405 82946443 -101342219 - L1ME1 LINE L1 -3131 3035 3000 2254 113 0 3 chr4 82946443 82946744 -101341918 + AluSq SINE Alu 1 300 -13 7099 223 79 49 chr4 82946744 82947347 -101341315 - L1ME1 LINE L1 -3166 3000 2146 1597 152 64 0 chr4 82947706 82947991 -101340671 + AluSx SINE Alu 1 302 0 511 252 135 51 chr4 82948007 82948340 -101340322 - L1ME4a LINE L1 -11 6110 5750 288 295 18 0 chr4 82948348 82948460 -101340202 - L1ME4a LINE L1 -458 5663 5550 2184 118 10 7 chr4 82949991 82950288 -101338374 + AluSx SINE Alu 1 298 -14 225 310 0 0 chr4 82950702 82950773 -101337889 + L1ME1 LINE L1 523 593 -5937 3615 230 132 13 chr4 82951154 82952758 -101335904 + L1ME1 LINE L1 1016 2814 -3726 2582 154 52 2 chr4 82952762 82953241 -101335421 + L1PA8 LINE L1 1 503 -5372 25212 142 14 19 chr4 82953247 82955673 -101332989 + L1PA8 LINE L1 772 3209 -3278 1935 142 24 0 chr4 82955673 82955961 -101332701 + AluSx SINE Alu 1 295 -17 2238 89 0 3 chr4 82955963 82956265 -101332397 + AluY SINE Alu 1 301 0 25212 142 14 19 chr4 82956265 82959565 -101329097 + L1PA8 LINE L1 3210 6485 -2 2943 244 35 40 chr4 82959560 82960655 -101328007 + L1ME1 LINE L1 2801 3891 -2649 * 2069 117 3 41 chr4 82960655 82960972 -101327690 + AluSx SINE Alu 1 305 -7 2943 244 35 40 chr4 82960972 82961057 -101327605 + L1ME1 LINE L1 3891 3975 -2565 3355 244 46 40 chr4 82961087 82961283 -101327379 + L1ME1 LINE L1 4262 4455 -2085 1537 206 25 25 chr4 82961283 82961642 -101327020 - MLT1A1 LTR MaLR -2 363 5 3355 244 46 40 chr4 82961642 82962718 -101325944 + L1ME1 LINE L1 4455 5541 -999 2895 220 60 33 chr4 82962747 82963591 -101325071 + L1ME1 LINE L1 5677 6543 -17 654 143 0 0 chr4 82964327 82964425 -101324237 - Tigger7 DNA MER2_type -1 2586 2489 * 1501 176 23 0 chr4 82964423 82964684 -101323978 - Tigger7 DNA MER2_type -2220 267 1 405 241 169 42 chr4 82964853 82965019 -101323643 + MIR SINE MIR 1 187 -75 441 214 110 64 chr4 82966564 82966937 -101321725 - HAL1 LINE L1 -72 2435 2046 2099 235 129 48 chr4 82967086 82968168 -101320494 - HAL1 LINE L1 -703 1804 635 488 293 88 10 chr4 82970176 82970381 -101318281 + MIR SINE MIR 9 229 -33 1548 92 5 14 chr4 82970499 82970706 -101317956 - AluSx SINE Alu -107 205 1 588 266 298 19 chr4 82971950 82972776 -101315886 - L2 LINE L2 -3 3310 2264 354 164 49 0 chr4 82973167 82973289 -101315373 + (TA)n Simple_repeat Simple_repeat 1 128 0 30 45 0 0 chr4 82973327 82973371 -101315291 + AT_rich Low_complexity Low_complexity 1 44 0 2536 146 14 14 chr4 82975034 82975460 -101313202 - MSTB LTR MaLR 0 426 1 487 267 58 17 chr4 82975573 82975740 -101312922 - MIR SINE MIR -62 146 12 266 365 43 0 chr4 82976030 82976145 -101312517 + L2 LINE L2 3149 3268 -4 194 248 124 29 chr4 82976527 82976632 -101312030 - L2 LINE L2 -234 3038 2924 23 0 0 0 chr4 82977012 82977035 -101311627 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr4 82977494 82977527 -101311135 + AT_rich Low_complexity Low_complexity 1 33 0 2203 101 3 10 chr4 82978999 82979296 -101309366 - AluSx SINE Alu -17 295 1 222 91 0 0 chr4 82979507 82979540 -101309122 + (TG)n Simple_repeat Simple_repeat 2 34 0 913 152 79 0 chr4 82979568 82979733 -101308929 - MER5B DNA MER1_type 0 178 1 775 237 88 12 chr4 82980759 82981008 -101307654 - LTR16A LTR ERVL -8 442 175 309 277 43 0 chr4 82982222 82982316 -101306346 + MIR3 SINE MIR 102 199 -9 893 208 0 7 chr4 82983035 82983189 -101305473 + FAM SINE Alu 15 167 -18 31 0 0 0 chr4 82983526 82983557 -101305105 + AT_rich Low_complexity Low_complexity 1 31 0 2829 174 29 6 chr4 82983956 82984480 -101304182 - MLT2B3 LTR ERVL -17 537 2 1067 159 62 10 chr4 82984687 82984895 -101303767 + MER20 DNA MER1_type 1 219 0 373 285 32 8 chr4 82986465 82986588 -101302074 + L2 LINE L2 3186 3311 -2 332 241 66 80 chr4 82987877 82988089 -101300573 - L1MC5 LINE L1 -31 7930 7722 479 232 116 28 chr4 82989250 82989285 -101299377 + Charlie8 DNA MER1_type 68 98 -2319 1357 140 12 16 chr4 82989285 82989528 -101299134 + L1MB2 LINE L1 5930 6171 0 479 232 116 28 chr4 82989528 82989673 -101298989 + Charlie8 DNA MER1_type 98 264 -2153 2029 141 0 0 chr4 82990323 82990614 -101298048 - AluJb SINE Alu -21 291 1 236 344 172 18 chr4 82990771 82990934 -101297728 - MIR3 SINE MIR -3 205 18 545 284 133 27 chr4 82991397 82991622 -101297040 + MIR SINE MIR 4 252 -10 209 321 104 28 chr4 82991623 82991729 -101296933 - L2 LINE L2 -9 3263 3150 26 30 0 0 chr4 82992530 82992563 -101296099 + AT_rich Low_complexity Low_complexity 1 33 0 186 43 0 0 chr4 82994589 82994612 -101294050 + (TG)n Simple_repeat Simple_repeat 2 24 0 1266 202 29 48 chr4 82995430 82995654 -101293008 - MER58B DNA MER1_type -2114 306 88 2106 111 21 0 chr4 82995654 82995942 -101292720 + AluSg SINE Alu 2 295 -15 1266 202 29 48 chr4 82995942 82996029 -101292633 - MER58B DNA MER1_type -2332 88 1 24 67 0 0 chr4 82996093 82996138 -101292524 + AT_rich Low_complexity Low_complexity 1 45 0 282 306 0 0 chr4 82997415 82997477 -101291185 + L2 LINE L2 3244 3305 -8 365 204 176 0 chr4 82997884 82997992 -101290670 + MIR SINE MIR 112 238 -24 2231 81 14 3 chr4 82998315 82998610 -101290052 - AluSq SINE Alu -15 298 1 763 237 5 0 chr4 82999523 82999713 -101288949 - MER3 DNA MER1_type -18 191 1 670 224 7 13 chr4 83000312 83000464 -101288198 + MER8 DNA MER2_type 11 161 -78 1140 186 60 0 chr4 83000481 83000750 -101287912 - L1MA4 LINE L1 -3 6297 6013 302 246 0 0 chr4 83000756 83000821 -101287841 + MER2 DNA MER2_type 281 345 0 1274 146 49 8 chr4 83000829 83001075 -101287587 - L1M4 LINE L1 -360 5818 5563 26 0 0 0 chr4 83001084 83001110 -101287552 + AT_rich Low_complexity Low_complexity 1 26 0 6909 35 4 0 chr4 83001117 83001999 -101286663 - L1PA4 LINE L1 -2 6153 5268 942 151 26 0 chr4 83002586 83002738 -101285924 - MER30B DNA MER1_type 0 230 75 7042 47 5 27 chr4 83002738 83003639 -101285023 + L1PA8 LINE L1 4467 5331 -845 978 9 0 0 chr4 83003639 83003746 -101284916 - U6 snRNA snRNA 0 107 1 7042 47 5 27 chr4 83003746 83004575 -101284087 + L1PA8 LINE L1 5331 6176 0 618 71 0 0 chr4 83004950 83005034 -101283628 - MER30B DNA MER1_type -106 84 1 22 35 0 0 chr4 83006159 83006188 -101282474 + AT_rich Low_complexity Low_complexity 1 29 0 476 252 79 34 chr4 83006253 83006452 -101282210 + MIR SINE MIR 16 212 -50 263 261 46 0 chr4 83006486 83006551 -101282111 + L2 LINE L2 3246 3313 0 249 224 179 0 chr4 83006744 83006811 -101281851 - L2 LINE L2 -4 3268 3190 400 301 236 36 chr4 83007103 83007488 -101281174 - L2 LINE L2 -571 2743 2282 1625 164 3 86 chr4 83008014 83008338 -101280324 + AluJb SINE Alu 1 297 -15 2271 108 0 0 chr4 83008371 83008667 -101279995 - AluSx SINE Alu -16 296 1 277 316 0 0 chr4 83009513 83009611 -101279051 + CT-rich Low_complexity Low_complexity 1 98 0 809 213 34 38 chr4 83010144 83010379 -101278283 - MLT1A1 LTR MaLR -12 353 120 518 186 264 67 chr4 83011424 83011617 -101277045 - MIR SINE MIR -10 252 22 727 78 29 0 chr4 83012336 83012438 -101276224 + L1MB5 LINE L1 6062 6166 -8 209 256 0 0 chr4 83012441 83012484 -101276178 + (TG)n Simple_repeat Simple_repeat 1 43 0 329 287 76 53 chr4 83013452 83013773 -101274889 - L1M4 LINE L1 -1537 4609 4223 884 246 18 14 chr4 83014462 83014682 -101273980 - MIR SINE MIR 0 262 42 417 122 0 0 chr4 83016069 83016143 -101272519 + (TCC)n Simple_repeat Simple_repeat 1 74 0 186 103 0 0 chr4 83016474 83016503 -101272159 + (CCG)n Simple_repeat Simple_repeat 2 30 0 570 309 181 31 chr4 83017066 83017419 -101271243 - MER115 DNA AcHobo -277 416 11 468 313 0 22 chr4 83017589 83017768 -101270894 + C-rich Low_complexity Low_complexity 2 176 0 225 294 0 0 chr4 83017789 83018119 -101270543 + CT-rich Low_complexity Low_complexity 1 330 0 207 160 13 80 chr4 83018174 83018324 -101270338 + (CCCA)n Simple_repeat Simple_repeat 1 140 0 346 219 0 86 chr4 83018340 83018491 -101270171 + C-rich Low_complexity Low_complexity 6 143 0 249 283 70 29 chr4 83018610 83018772 -101269890 - MIR SINE MIR -60 202 34 1492 253 117 7 chr4 83018951 83019497 -101269165 - L1ME1 LINE L1 -6 6160 5555 683 217 7 0 chr4 83019605 83019757 -101268905 - MLT1-int LTR MaLR -1218 153 1 2255 149 7 47 chr4 83019762 83020186 -101268476 - MLT2D LTR ERVL -7 407 1 200 207 317 0 chr4 83020378 83020460 -101268202 - MIR SINE MIR -119 143 36 1922 144 31 0 chr4 83020911 83021202 -101267460 - AluJo SINE Alu -12 300 1 773 224 31 15 chr4 83021326 83021522 -101267140 - MIR SINE MIR 0 262 64 321 250 44 70 chr4 83021612 83021940 -101266722 - L1ME2 LINE L1 -283 5881 5559 2913 149 54 17 chr4 83021970 83022507 -101266155 + MER89 LTR ERV1 1 557 -2 334 282 55 25 chr4 83022533 83022696 -101265966 - L1ME2 LINE L1 -568 5553 5386 2290 114 0 19 chr4 83023978 83024294 -101264368 - AluSx SINE Alu -2 310 1 1119 157 130 8 chr4 83024448 83024710 -101263952 - L1MB8 LINE L1 -1 6177 5884 229 308 15 30 chr4 83026997 83027130 -101261532 + CT-rich Low_complexity Low_complexity 2 132 0 186 43 0 0 chr4 83028388 83028411 -101260251 + (A)n Simple_repeat Simple_repeat 1 23 0 441 234 28 28 chr4 83028606 83028713 -101259949 + MIR3 SINE MIR 97 203 -5 442 198 143 0 chr4 83029127 83029253 -101259409 + MER58C DNA MER1_type 56 199 -16 1031 192 57 0 chr4 83029557 83029750 -101258912 + MIR SINE MIR 43 246 -16 259 283 0 0 chr4 83030136 83030196 -101258466 + MER20B DNA MER1_type 98 157 -626 2028 171 40 3 chr4 83030227 83030579 -101258083 + MLT1A1 LTR MaLR 1 365 0 12359 154 44 61 chr4 83030705 83032234 -101256428 - L1MA4 LINE L1 -5 6499 4945 2466 77 3 0 chr4 83032234 83032534 -101256128 - AluY SINE Alu -10 301 1 12359 154 44 61 chr4 83032534 83033249 -101255413 - L1MA4 LINE L1 -1559 4945 4219 1141 177 0 16 chr4 83033249 83033435 -101255227 - AluJb SINE Alu -30 282 100 12359 154 44 61 chr4 83033435 83034663 -101253999 - L1MA4 LINE L1 -2285 4219 2929 2478 74 7 0 chr4 83034663 83034972 -101253690 + AluY SINE Alu 1 311 0 12359 154 44 61 chr4 83034972 83036072 -101252590 - L1MA4 LINE L1 -3575 2929 1812 867 174 0 0 chr4 83036072 83036204 -101252458 - AluSq/x SINE Alu -181 132 1 1968 247 37 18 chr4 83036204 83036995 -101251667 - L1MA4 LINE L1 -4080 1270 1020 752 316 55 40 chr4 83037477 83037879 -101250783 - L1MA4 LINE L1 -5873 408 1 854 224 83 8 chr4 83037881 83038122 -101250540 - L1MD3 LINE L1 -9 7986 7728 847 143 25 17 chr4 83038523 83038888 -101249774 + CT-rich Low_complexity Low_complexity 1 368 0 188 307 264 0 chr4 83041366 83041506 -101247156 - MIR SINE MIR -7 255 79 317 247 24 0 chr4 83041657 83041742 -101246920 + MER5A DNA MER1_type 10 96 -93 183 304 0 22 chr4 83042756 83042802 -101245860 + MIR SINE MIR 30 74 -188 21 0 0 0 chr4 83044782 83044803 -101243859 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr4 83044875 83044904 -101243758 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 83046675 83046697 -101241965 + AT_rich Low_complexity Low_complexity 1 22 0 200 222 0 0 chr4 83047400 83047436 -101241226 + (TG)n Simple_repeat Simple_repeat 1 36 0 325 312 71 0 chr4 83048357 83048498 -101240164 - MIR SINE MIR -18 244 94 2220 106 7 3 chr4 83049530 83049833 -101238829 - AluSx SINE Alu -8 304 1 826 200 20 0 chr4 83049952 83050102 -101238560 - FRAM SINE Alu -21 155 3 21 36 0 0 chr4 83050979 83051007 -101237655 + AT_rich Low_complexity Low_complexity 1 28 0 274 250 171 0 chr4 83052788 83052876 -101235786 + L2 LINE L2 3160 3262 -10 208 171 49 0 chr4 83053051 83053092 -101235570 + MIR SINE MIR 204 246 -16 * 214 136 91 23 chr4 83053064 83053108 -101235554 + L2 LINE L2 3264 3310 -3 252 308 92 23 chr4 83053200 83053330 -101235332 + L3 LINE CR1 247 385 -1192 780 341 87 28 chr4 83053409 83053739 -101234923 + L3 LINE CR1 558 867 -710 1040 181 27 41 chr4 83053739 83053960 -101234702 + MER20 DNA MER1_type 1 218 -1 780 341 87 28 chr4 83053960 83054368 -101234294 + L3 LINE CR1 867 1339 -238 21 71 0 0 chr4 83054441 83054483 -101234179 + AT_rich Low_complexity Low_complexity 1 42 0 288 271 14 0 chr4 83054605 83054675 -101233987 + L3 LINE CR1 1480 1550 -27 258 256 8 53 chr4 83056278 83056411 -101232251 + A-rich Low_complexity Low_complexity 2 128 0 1670 274 35 14 chr4 83158198 83158708 -101129954 - LTR33 LTR ERVL 0 521 1 659 277 69 36 chr4 83158788 83159091 -101129571 + L1ME LINE L1 5479 5791 -330 1062 169 28 5 chr4 83159104 83159320 -101129342 + MER33 DNA MER1_type 1 210 -97 254 246 8 102 chr4 83159592 83159710 -101128952 - MER34 LTR ERV1 -395 147 41 395 229 137 0 chr4 83159770 83159901 -101128761 + MIR SINE MIR 77 225 -37 264 137 0 0 chr4 83160054 83160105 -101128557 + (T)n Simple_repeat Simple_repeat 1 51 0 328 239 15 30 chr4 83160678 83160812 -101127850 - L2 LINE L2 -211 3061 2930 1146 175 29 19 chr4 83161299 83161687 -101126975 + L1M4 LINE L1 5092 5482 -696 1395 229 117 51 chr4 83161857 83162110 -101126552 + MLT2B1 LTR ERVL 1 236 -284 297 0 0 0 chr4 83162110 83162143 -101126519 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1395 229 117 51 chr4 83162143 83162330 -101126332 + MLT2B1 LTR ERVL 236 478 -42 306 0 0 0 chr4 83162330 83162364 -101126298 + (CA)n Simple_repeat Simple_repeat 2 35 0 1395 229 117 51 chr4 83162364 83162410 -101126252 + MLT2B1 LTR ERVL 478 520 0 222 243 65 19 chr4 83163068 83163175 -101125487 - MIR3 SINE MIR -21 187 76 1899 154 51 0 chr4 83164328 83164620 -101124042 - AluJb SINE Alu -5 307 1 459 321 23 0 chr4 83164834 83164965 -101123697 + MER94 DNA DNA 1 134 0 1227 135 5 16 chr4 83165019 83165211 -101123451 - AluSg/x SINE Alu -8 301 112 2882 3 0 0 chr4 83165819 83166121 -101122541 + AluYa5 SINE Alu 3 304 -7 1789 169 13 13 chr4 83167253 83167561 -101121101 - AluJb SINE Alu -3 309 2 595 283 25 29 chr4 83167561 83167801 -101120861 - LTR16A1 LTR ERVL -6 451 213 197 255 20 0 chr4 83168032 83168083 -101120579 - L3 LINE CR1 -204 1373 1322 274 292 28 0 chr4 83168362 83168434 -101120228 - LTR67 LTR ERVL -370 187 114 759 214 60 0 chr4 83168983 83169151 -101119511 + MER5B DNA MER1_type 1 178 0 292 244 44 37 chr4 83169214 83169349 -101119313 + L2 LINE L2 2871 3006 -266 2848 3 0 7 chr4 83169438 83169743 -101118919 + AluYa5 SINE Alu 1 303 -8 189 121 0 0 chr4 83169866 83169899 -101118763 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 185 308 75 19 chr4 83170221 83170328 -101118334 - L2 LINE L2 -1 3271 3159 14483 68 13 7 chr4 83173538 83175827 -101112835 - L1P3 LINE L1 -404 5750 3459 431 254 54 15 chr4 83176848 83176978 -101111684 + MIR SINE MIR 45 179 -83 1461 163 19 11 chr4 83177923 83178187 -101110475 - L1P LINE L1 -2088 4058 3793 338 256 146 15 chr4 83178187 83178324 -101110338 + MIR SINE MIR 101 255 -7 522 212 114 8 chr4 83178398 83178530 -101110132 + MER5A DNA MER1_type 1 146 -43 1839 253 48 23 chr4 83178530 83179008 -101109654 + MLT1F LTR MaLR 1 490 -52 7053 43 1 1 chr4 83179021 83179861 -101108801 - L1PA5 LINE L1 -4 6150 5311 421 138 0 0 chr4 83179876 83179941 -101108721 + MLT1F LTR MaLR 501 565 -2 244 235 0 0 chr4 83179943 83179994 -101108668 + MER5A DNA MER1_type 139 189 0 1128 152 5 11 chr4 83180077 83180261 -101108401 + AluSq SINE Alu 1 183 -130 380 292 50 0 chr4 83180566 83180686 -101107976 + L2 LINE L2 3147 3272 0 1037 135 0 19 chr4 83182073 83182229 -101106433 - MER4B LTR ERV1 -457 153 1 643 189 91 14 chr4 83182229 83182371 -101106291 + MER46C DNA MER2_type 186 338 0 1874 141 65 83 chr4 83182441 83182838 -101105824 + MLT1B LTR MaLR 1 390 0 4618 90 3 2 chr4 83182854 83183453 -101105209 - MER4A LTR ERV1 0 600 1 1269 180 152 4 chr4 83183511 83183755 -101104907 + AluJo SINE Alu 2 281 -31 227 31 31 0 chr4 83183760 83183792 -101104870 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 346 114 29 14 chr4 83183903 83183973 -101104689 + CT-rich Low_complexity Low_complexity 1 71 0 420 227 132 35 chr4 83184073 83184260 -101104402 + MLT1G1 LTR MaLR 6 167 -388 3122 99 49 57 chr4 83184339 83184865 -101103797 - L1PA11 LINE L1 0 6174 5653 1363 145 0 84 chr4 83184868 83185130 -101103532 - AluSc SINE Alu -14 295 56 2856 96 6 24 chr4 83185130 83185663 -101102999 - L1PA11 LINE L1 -512 5662 5137 353 257 106 39 chr4 83185767 83185946 -101102716 + MLT1G1 LTR MaLR 346 536 -6 24 32 0 0 chr4 83186558 83186589 -101102073 + AT_rich Low_complexity Low_complexity 1 31 0 36542 42 1 1 chr4 83187437 83192234 -101096428 + L1P LINE L1 221 5017 -1129 2649 189 89 108 chr4 83192334 83193565 -101095097 + L1MDa LINE L1 314 1677 -4863 416 237 112 56 chr4 83194408 83194657 -101094005 - MLT1H LTR MaLR -27 522 260 1786 276 69 26 chr4 83195039 83195939 -101092723 - L2 LINE L2 0 3313 2375 1051 297 32 19 chr4 83195992 83196366 -101092296 + LTR16C LTR ERVL 24 402 -89 864 279 55 46 chr4 83196437 83196763 -101091899 - L2 LINE L2 -954 2360 2032 288 217 280 28 chr4 83197359 83197382 -101091280 - MARNA DNA Mariner -19 567 551 2240 117 0 0 chr4 83197382 83197681 -101090981 - AluSx SINE Alu -13 299 1 288 217 280 28 chr4 83197681 83197800 -101090862 - MARNA DNA Mariner -35 551 389 2849 181 8 6 chr4 83198006 83198520 -101090142 + MLT2B2 LTR ERVL 1 515 0 533 214 34 0 chr4 83198571 83198688 -101089974 - MER45 DNA AcHobo -2 1579 1459 * 599 242 25 12 chr4 83198682 83198843 -101089819 - MER45 DNA AcHobo -847 193 31 1427 116 1 4 chr4 83199475 83199717 -101088945 - pTR5 LTR ERV1 -2046 392 49 301 219 0 12 chr4 83199717 83199799 -101088863 - LTR30 LTR ERV1 -98 624 544 4920 116 29 34 chr4 83199803 83200954 -101087708 - pTR5 LTR ERV1 -417 2021 733 1942 134 72 6 chr4 83201030 83201350 -101087312 - MER61A LTR ERV1 -2 341 1 6715 51 6 2 chr4 83202350 83203197 -101085465 + L1PA4 LINE L1 5306 6155 0 361 291 16 0 chr4 83203335 83203462 -101085200 + L1ME3 LINE L1 5554 5682 -439 21 0 0 0 chr4 83203554 83203575 -101085087 + AT_rich Low_complexity Low_complexity 1 21 0 245 229 37 55 chr4 83203688 83203797 -101084865 + L1ME4a LINE L1 5968 6074 -47 24 0 0 0 chr4 83203825 83203849 -101084813 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr4 83203974 83203998 -101084664 + AT_rich Low_complexity Low_complexity 1 24 0 1809 165 0 14 chr4 83203998 83204295 -101084367 - AluJb SINE Alu -17 295 3 189 0 0 0 chr4 83205299 83205320 -101083342 + (TTTAA)n Simple_repeat Simple_repeat 3 23 0 2959 76 59 0 chr4 83205320 83205726 -101082936 - L1PA10 LINE L1 -19 6149 5720 207 256 0 0 chr4 83206170 83206209 -101082453 - MIR SINE MIR -6 256 218 777 254 44 26 chr4 83206209 83206481 -101082181 + MLT1J1 LTR MaLR 15 291 -155 212 212 15 0 chr4 83206792 83206858 -101081804 + (TA)n Simple_repeat Simple_repeat 2 68 0 1342 263 57 2 chr4 83207337 83207797 -101080865 + L1ME3 LINE L1 5678 6162 0 423 0 0 0 chr4 83208665 83208712 -101079950 + (TGGA)n Simple_repeat Simple_repeat 3 49 0 395 235 158 54 chr4 83212911 83213132 -101075530 + L2 LINE L2 3070 3313 0 1990 119 0 34 chr4 83213199 83213518 -101075144 + AluSx SINE Alu 1 309 0 2491 128 3 3 chr4 83214185 83214569 -101074093 - HERVH LTR ERV1 -2764 4949 4566 1159 258 56 23 chr4 83214659 83215054 -101073608 - ERVL LTR ERVL -1456 4308 3901 991 293 140 35 chr4 83215103 83216333 -101072329 - ERVL LTR ERVL -1707 3778 2447 25 0 0 0 chr4 83216349 83216374 -101072288 + AT_rich Low_complexity Low_complexity 1 25 0 194 226 0 0 chr4 83217468 83217499 -101071163 - MIR SINE MIR -90 118 88 360 0 0 0 chr4 83217774 83217814 -101070848 + (A)n Simple_repeat Simple_repeat 1 40 0 1842 141 32 0 chr4 83217918 83218201 -101070461 - AluJb SINE Alu -16 296 5 6277 100 10 23 chr4 83219017 83220362 -101068300 + L1P3 LINE L1 839 2172 -4289 380 119 0 0 chr4 83220422 83220481 -101068181 + L1PA5 LINE L1 6088 6146 -8 24 32 0 0 chr4 83220481 83220512 -101068150 + AT_rich Low_complexity Low_complexity 1 31 0 1311 217 83 23 chr4 83221001 83221388 -101067274 + MER63B DNA MER1_type 1 410 -26 211 353 133 0 chr4 83221450 83221600 -101067062 + L2 LINE L2 3103 3272 0 230 163 0 0 chr4 83221778 83221827 -101066835 + L1MA9 LINE L1 6229 6277 -35 1036 289 108 31 chr4 83221884 83222405 -101066257 - L2 LINE L2 0 3313 2756 243 0 0 0 chr4 83222461 83222488 -101066174 + (TG)n Simple_repeat Simple_repeat 1 27 0 2411 55 0 0 chr4 83223309 83223601 -101065061 - AluY SINE Alu -19 292 1 266 311 11 0 chr4 83223954 83224044 -101064618 - MLT1G1 LTR MaLR -82 485 395 903 204 35 118 chr4 83224118 83224456 -101064206 - MLT1G1 LTR MaLR -285 310 1 1330 170 37 89 chr4 83224504 83224887 -101063775 - MLT1A1 LTR MaLR -2 363 1 508 284 37 6 chr4 83224920 83225082 -101063580 - MIR SINE MIR -1 261 95 1638 184 0 30 chr4 83226036 83226341 -101062321 + AluJb SINE Alu 1 296 -16 550 228 39 0 chr4 83226636 83226763 -101061899 + MIR SINE MIR 53 184 -78 304 278 127 40 chr4 83227853 83228026 -101060636 + MIR SINE MIR 54 241 -21 1775 146 0 18 chr4 83228503 83228783 -101059879 + AluJb SINE Alu 25 299 -13 1860 154 20 66 chr4 83228932 83229340 -101059322 + MLT1B LTR MaLR 1 389 -1 1594 135 43 29 chr4 83229893 83230174 -101058488 - AluJb SINE Alu -7 305 21 206 152 0 22 chr4 83231438 83231484 -101057178 + GA-rich Low_complexity Low_complexity 2 46 0 1681 163 14 14 chr4 83231484 83231766 -101056896 - AluJb SINE Alu -30 282 1 256 226 65 32 chr4 83231770 83231863 -101056799 + L2 LINE L2 3152 3247 -66 435 298 27 58 chr4 83232515 83232740 -101055922 + L2 LINE L2 2851 3068 -245 212 143 0 41 chr4 83235362 83235379 -101053283 + (TAAAAA)n Simple_repeat Simple_repeat 6 22 -30 6666 64 3 7 chr4 83235379 83236518 -101052144 + L1PA8A LINE L1 4992 6128 -3 212 143 0 41 chr4 83236518 83236549 -101052113 + (TAAAAA)n Simple_repeat Simple_repeat 22 52 0 23 33 0 0 chr4 83236806 83236836 -101051826 + AT_rich Low_complexity Low_complexity 1 30 0 232 196 20 0 chr4 83237877 83237928 -101050734 + (TATG)n Simple_repeat Simple_repeat 1 52 0 586 211 173 73 chr4 83237932 83238301 -101050361 - L1ME3 LINE L1 -85 6077 5672 584 325 32 0 chr4 83238858 83239046 -101049616 + MIR SINE MIR 56 249 -13 660 233 24 68 chr4 83239082 83239288 -101049374 + MIR SINE MIR 12 208 -54 319 331 23 15 chr4 83239911 83240044 -101048618 - MIR SINE MIR -105 157 24 2022 150 0 0 chr4 83240193 83240512 -101048150 + AluJo SINE Alu 1 319 0 2408 88 0 0 chr4 83240596 83240902 -101047760 + AluY SINE Alu 1 306 -5 183 224 47 47 chr4 83241091 83241176 -101047486 + L2 LINE L2 1596 1680 -1634 2176 122 0 13 chr4 83244353 83244665 -101043997 - AluSx SINE Alu -4 308 1 454 333 4 13 chr4 83244767 83244995 -101043667 - MARNA DNA Mariner -13 573 348 387 313 74 56 chr4 83246315 83246601 -101042061 + MARNA DNA Mariner 5 305 -281 1996 141 31 0 chr4 83246601 83246891 -101041771 - AluSx SINE Alu -12 300 2 387 313 74 56 chr4 83246891 83247102 -101041560 + MARNA DNA Mariner 305 511 -75 1243 188 31 0 chr4 83247118 83247342 -101041320 - AluJb SINE Alu -81 231 1 22 70 0 0 chr4 83247802 83247845 -101040817 + AT_rich Low_complexity Low_complexity 1 43 0 1268 204 48 74 chr4 83248653 83249033 -101039629 - MLT1C LTR MaLR -2 465 96 2100 129 7 0 chr4 83249033 83249327 -101039335 + AluSp SINE Alu 2 297 -16 1268 204 48 74 chr4 83249327 83249367 -101039295 - MLT1C LTR MaLR -371 96 56 320 314 66 7 chr4 83249820 83249957 -101038705 - L2 LINE L2 -8 3305 3161 455 165 186 0 chr4 83250137 83250234 -101038428 - FLAM_C SINE Alu -28 115 1 246 334 143 48 chr4 83250409 83250954 -101037708 + L2 LINE L2 2380 2976 -338 338 177 0 0 chr4 83250965 83251027 -101037635 - MLT1D LTR MaLR 0 505 444 1518 91 0 0 chr4 83251031 83251228 -101037434 + AluYb8 SINE Alu 1 197 -121 556 40 0 0 chr4 83251228 83251304 -101037358 + AluY SINE Alu 230 305 -4 1318 216 108 32 chr4 83251317 83251725 -101036937 - MLT1D LTR MaLR -66 439 1 604 209 0 0 chr4 83251858 83251963 -101036699 + MER81 DNA DNA 10 114 0 184 306 42 42 chr4 83254248 83254320 -101034342 - MER5C DNA MER1_type -252 72 1 289 331 65 50 chr4 83254320 83254459 -101034203 - MIR3 SINE MIR -48 160 20 30 45 0 0 chr4 83254619 83254663 -101033999 + AT_rich Low_complexity Low_complexity 1 44 0 393 195 13 0 chr4 83255864 83255941 -101032721 + Tigger5 DNA MER2_type 2 79 -2244 401 164 0 0 chr4 83255943 83256010 -101032652 - Tigger5 DNA MER2_type -6 2317 2251 383 188 0 0 chr4 83256014 83256083 -101032579 + Tigger5 DNA MER2_type 2255 2323 0 550 244 30 18 chr4 83256092 83256260 -101032402 - MLT1K LTR MaLR -25 563 394 921 318 94 16 chr4 83256280 83256780 -101031882 - LTR67 LTR ERVL -13 544 6 411 315 70 21 chr4 83256813 83257054 -101031608 - MLT1K LTR MaLR -234 354 102 222 171 0 0 chr4 83257413 83257454 -101031208 + (TATG)n Simple_repeat Simple_repeat 3 43 0 632 267 75 5 chr4 83257454 83257641 -101031021 - MIR SINE MIR -58 204 5 232 345 36 0 chr4 83257649 83257733 -101030929 + L3 LINE CR1 1426 1512 -65 2083 84 17 9 chr4 83258827 83259220 -101029442 + LTR7 LTR ERV1 1 442 -8 237 161 36 18 chr4 83259564 83259620 -101029042 + MLT1J LTR MaLR 112 168 -343 245 313 91 0 chr4 83259641 83259740 -101028922 + MLT1L LTR MaLR 287 394 -221 302 98 20 0 chr4 83259763 83259814 -101028848 + (GGA)n Simple_repeat Simple_repeat 2 53 0 1471 177 71 122 chr4 83260272 83260974 -101027688 + MER4A LTR ERV1 1 872 0 463 199 260 56 chr4 83261886 83262082 -101026580 - MER106A DNA MER1_type 0 236 1 535 201 94 81 chr4 83262918 83263385 -101025277 + LTR48 LTR ERV1 157 628 -16 2219 114 0 10 chr4 83263406 83263704 -101024958 - AluSq SINE Alu -18 295 1 25 51 0 0 chr4 83263840 83263879 -101024783 + AT_rich Low_complexity Low_complexity 1 39 0 2471 91 0 0 chr4 83265179 83265486 -101023176 - AluSg SINE Alu -3 307 1 252 216 0 0 chr4 83265735 83265786 -101022876 + L3 LINE CR1 909 959 -618 292 265 99 7 chr4 83265875 83266026 -101022636 + L3 LINE CR1 1178 1342 -235 29 84 0 0 chr4 83267438 83267509 -101021153 + AT_rich Low_complexity Low_complexity 1 71 0 371 325 21 28 chr4 83267572 83267855 -101020807 - L1MC4a LINE L1 -1953 5855 5575 454 205 35 64 chr4 83268206 83268377 -101020285 + L1MC5 LINE L1 7160 7325 -636 1160 189 104 28 chr4 83268427 83268510 -101020152 + L1MC5 LINE L1 7452 7527 -434 2235 162 42 26 chr4 83268510 83268937 -101019725 - Tigger2a DNA MER2_type 0 434 1 1160 189 104 28 chr4 83268937 83269286 -101019376 + L1MC5 LINE L1 7527 7917 -44 4502 215 93 51 chr4 83270667 83271010 -101017652 + L1MDa LINE L1 3 330 -6210 1842 166 0 29 chr4 83271010 83271317 -101017345 - AluJb SINE Alu -14 298 1 4502 215 93 51 chr4 83271317 83272496 -101016166 + L1MDa LINE L1 330 1588 -4952 307 286 194 0 chr4 83273114 83273212 -101015450 + L2 LINE L2 3155 3271 -1 285 274 12 0 chr4 83273212 83273296 -101015366 + GA-rich Low_complexity Low_complexity 4 88 0 23 33 0 0 chr4 83273485 83273515 -101015147 + AT_rich Low_complexity Low_complexity 1 30 0 222 37 0 0 chr4 83273621 83273648 -101015014 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 406 158 49 0 chr4 83273648 83273730 -101014932 + L1MDa LINE L1 1592 1677 -4863 329 277 17 17 chr4 83273778 83273955 -101014707 + (TA)n Simple_repeat Simple_repeat 2 178 0 447 359 15 36 chr4 83274115 83274310 -101014352 - MIR SINE MIR -71 191 1 231 301 131 17 chr4 83274404 83274523 -101014139 - MIR SINE MIR -28 180 35 780 271 26 15 chr4 83275018 83275261 -101013401 - MIR SINE MIR -3 205 10 656 279 132 5 chr4 83275322 83275526 -101013136 - MIR SINE MIR 0 262 33 26 0 0 0 chr4 83275533 83275559 -101013103 + AT_rich Low_complexity Low_complexity 1 26 0 1415 69 128 0 chr4 83275645 83275849 -101012813 + L1PA11 LINE L1 5942 6171 -3 746 142 24 8 chr4 83275864 83275991 -101012671 + FLAM_C SINE Alu 1 129 -14 458 194 0 10 chr4 83275993 83276096 -101012566 + GA-rich Low_complexity Low_complexity 3 104 0 933 157 61 0 chr4 83276151 83276298 -101012364 - AluSg/x SINE Alu -20 292 137 186 343 78 0 chr4 83277688 83277790 -101010872 + MIR SINE MIR 100 209 -53 2011 148 120 30 chr4 83277799 83278018 -101010644 - MSTA LTR MaLR 0 428 230 2198 113 0 3 chr4 83278018 83278320 -101010342 - AluSq SINE Alu -12 301 1 2011 148 120 30 chr4 83278320 83278493 -101010169 - MSTA LTR MaLR -198 230 1 458 261 24 101 chr4 83282291 83282498 -101006164 + MIR SINE MIR 48 238 -24 517 251 30 36 chr4 83282522 83282689 -101005973 - MIR SINE MIR -37 225 60 329 261 72 9 chr4 83282699 83282810 -101005852 + MIR SINE MIR 126 243 -19 10119 103 5 122 chr4 83282877 83283189 -101005473 + L1P LINE L1 3126 3473 -2673 6246 111 47 28 chr4 83283189 83284238 -101004424 - MER11C LTR ERVK -2 1069 1 10119 103 5 122 chr4 83284238 83284279 -101004383 + L1P LINE L1 3473 3517 -2629 594 87 8 110 chr4 83284279 83284406 -101004256 + MER11B LTR ERVK 1123 1236 0 10119 103 5 122 chr4 83284406 83286055 -101002607 + L1P LINE L1 3517 5006 -1140 287 281 7 20 chr4 83286829 83286975 -101001687 + GA-rich Low_complexity Low_complexity 1 144 0 1739 186 32 22 chr4 83288146 83288516 -101000146 + MLT1A2 LTR MaLR 1 374 0 615 138 81 8 chr4 83288705 83288828 -100999834 + MER106B DNA MER1_type 3 134 -925 761 336 119 48 chr4 83289320 83290846 -100997816 - L2 LINE L2 -3 3269 1611 4826 174 21 7 chr4 83292190 83292612 -100996050 + L1MB1 LINE L1 5186 5601 -567 2274 109 54 6 chr4 83292612 83292961 -100995701 - MER47A DNA MER2_type 0 366 1 4826 174 21 7 chr4 83292961 83293509 -100995153 + L1MB1 LINE L1 5601 6167 -1 211 350 72 39 chr4 83293601 83293781 -100994881 - L2 LINE L2 -640 2674 2489 622 224 142 80 chr4 83294222 83294819 -100993843 - L1MC5 LINE L1 -53 7908 7275 276 306 105 40 chr4 83294859 83294983 -100993679 - MIR SINE MIR -57 151 20 238 362 158 36 chr4 83295062 83295479 -100993183 + L2 LINE L2 2413 2880 -434 375 336 29 15 chr4 83295522 83295659 -100993003 + MIR SINE MIR 12 150 -112 22729 26 0 0 chr4 83296351 83299836 -100988826 + L1PA3 LINE L1 2666 6153 -2 28 48 0 0 chr4 83302291 83302333 -100986329 + AT_rich Low_complexity Low_complexity 1 42 0 453 90 0 0 chr4 83302741 83302808 -100985854 + (CA)n Simple_repeat Simple_repeat 1 67 0 1540 196 63 0 chr4 83302919 83303205 -100985457 - AluJb SINE Alu -6 306 3 21 36 0 0 chr4 83305419 83305447 -100983215 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr4 83306597 83306635 -100982027 + AT_rich Low_complexity Low_complexity 1 38 0 231 350 98 14 chr4 83306926 83307069 -100981593 + MIR3 SINE MIR 46 200 -8 2092 145 0 0 chr4 83308001 83308305 -100980357 + AluSx SINE Alu 9 312 0 2434 71 0 0 chr4 83309455 83309749 -100978913 - AluY SINE Alu -15 296 3 1967 224 113 26 chr4 83309762 83310426 -100978236 - L1ME3A LINE L1 -9 6161 5440 2063 115 30 0 chr4 83311222 83311518 -100977144 + AluSc SINE Alu 3 307 -2 195 218 0 0 chr4 83312677 83312732 -100975930 + GA-rich Low_complexity Low_complexity 1 55 0 611 111 12 146 chr4 83313924 83314095 -100974567 - MER53 DNA DNA 0 189 42 2094 110 0 14 chr4 83314108 83314398 -100974264 - AluSx SINE Alu -26 286 1 14561 192 42 26 chr4 83314899 83315250 -100973412 - L1PB1 LINE L1 -4 6863 6519 495 0 0 0 chr4 83315250 83315305 -100973357 + (TA)n Simple_repeat Simple_repeat 1 55 0 14561 192 42 26 chr4 83315305 83321554 -100967108 - L1PB1 LINE L1 -348 6519 6 351 0 0 0 chr4 83321564 83321603 -100967059 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2008 143 0 0 chr4 83321605 83321885 -100966777 - AluSx SINE Alu -32 280 1 304 220 110 10 chr4 83321899 83321999 -100966663 - L1MC4 LINE L1 0 8042 7933 2242 85 3 3 chr4 83322013 83322295 -100966367 - AluSg SINE Alu -23 287 6 420 286 89 6 chr4 83322354 83322522 -100966140 + LTR16C LTR ERVL 307 488 -3 836 327 44 65 chr4 83323754 83324280 -100964382 - REP3 LTR ERV -44 518 4 307 237 0 0 chr4 83325435 83325494 -100963168 - MER58A DNA MER1_type 0 224 166 1079 188 12 0 chr4 83325721 83325891 -100962771 - MER58A DNA MER1_type -50 174 3 414 229 25 74 chr4 83327079 83327201 -100961461 - MIR SINE MIR -116 146 31 4081 91 2 0 chr4 83327348 83327900 -100960762 + L1PA14 LINE L1 5600 6152 -9 22 0 0 0 chr4 83328286 83328308 -100960354 + AT_rich Low_complexity Low_complexity 1 22 0 1529 290 111 12 chr4 83328428 83329032 -100959630 + L2 LINE L2 2312 2975 -339 849 199 101 128 chr4 83329057 83329464 -100959198 - MSTD LTR MaLR 0 396 1 788 220 68 68 chr4 83329464 83329760 -100958902 + L2 LINE L2 3011 3306 -7 956 283 12 4 chr4 83331078 83331322 -100957340 + MIR SINE MIR 15 260 -2 513 236 132 29 chr4 83334331 83334643 -100954019 - LTR33A LTR ERVL -124 399 3 909 194 0 0 chr4 83335835 83335995 -100952667 + HERVH LTR ERV1 4990 5149 -2564 * 1400 114 23 9 chr4 83335992 83336212 -100952450 + HERVH LTR ERV1 5597 5819 -1894 * 2544 76 45 13 chr4 83336210 83336590 -100952072 + HERVH LTR ERV1 7322 7713 0 3578 40 5 2 chr4 83336590 83337037 -100951625 + LTR7 LTR ERV1 1 448 -2 241 154 0 0 chr4 83337159 83337198 -100951464 - L2 LINE L2 0 3313 3275 316 98 0 0 chr4 83337198 83337239 -100951423 - MER50 LTR ERV1 0 734 694 298 266 25 0 chr4 83337249 83337328 -100951334 - L2 LINE L2 -34 3279 3199 21 36 0 0 chr4 83338286 83338314 -100950348 + AT_rich Low_complexity Low_complexity 1 28 0 1635 93 22 4 chr4 83338400 83338626 -100950036 - MER30 DNA MER1_type 0 230 1 5979 212 20 10 chr4 83338712 83339563 -100949099 + L1 LINE L1 3371 4243 -1903 3998 148 2 2 chr4 83339563 83340197 -100948465 - MER41B LTR ERV1 0 635 2 5979 212 20 10 chr4 83340197 83340791 -100947871 + L1 LINE L1 4243 4830 -1316 2172 199 35 22 chr4 83340793 83341538 -100947124 - L1M4 LINE L1 -600 5574 4848 603 119 104 0 chr4 83341542 83341676 -100946986 + L1MB2 LINE L1 6021 6168 -3 766 254 223 11 chr4 83341680 83342035 -100946627 - L1ME3A LINE L1 -116 6054 5625 470 125 12 0 chr4 83342139 83342219 -100946443 + (TCCC)n Simple_repeat Simple_repeat 4 84 0 5521 63 7 0 chr4 83342550 83343251 -100945411 + L1PA7 LINE L1 5449 6154 0 2253 183 23 28 chr4 83343877 83344444 -100944218 - L1MA8 LINE L1 -3 6288 5725 1691 158 53 26 chr4 83344660 83344777 -100943885 + AluJb SINE Alu 1 113 -199 300 27 0 0 chr4 83344777 83344814 -100943848 + (CA)n Simple_repeat Simple_repeat 2 38 0 1691 158 53 26 chr4 83344814 83345000 -100943662 + AluJb SINE Alu 113 312 0 1052 88 11 22 chr4 83345011 83345193 -100943469 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 291 140 0 0 chr4 83345203 83345253 -100943409 + (GGAA)n Simple_repeat Simple_repeat 4 53 0 339 335 101 13 chr4 83345379 83345661 -100943001 - L2 LINE L2 -245 3068 2719 370 318 109 10 chr4 83345711 83345912 -100942750 - LTR33 LTR ERVL 0 521 301 338 210 194 0 chr4 83346014 83346138 -100942524 - LTR33 LTR ERVL -373 148 1 775 300 94 32 chr4 83346335 83346889 -100941773 - ERVL LTR ERVL -396 5368 4781 658 58 0 0 chr4 83346962 83347049 -100941613 - HERVH LTR ERV1 -3139 4574 4488 3186 117 0 6 chr4 83347051 83347556 -100941106 - HERVH LTR ERV1 -3720 3993 3492 856 147 7 0 chr4 83347546 83347696 -100940966 - HERVH LTR ERV1 -4423 3290 3140 * 19503 88 10 21 chr4 83347675 83350703 -100937959 - HERVH LTR ERV1 -4718 2995 1 3633 40 2 7 chr4 83350705 83351155 -100937507 - LTR7 LTR ERV1 -2 448 1 186 359 100 12 chr4 83352843 83353013 -100935649 - L2 LINE L2 -4 3309 3125 538 272 40 64 chr4 83354277 83354479 -100934183 - MIR SINE MIR -35 227 31 548 294 141 41 chr4 83354717 83355129 -100933533 + L3 LINE CR1 920 1372 -205 224 279 51 0 chr4 83355464 83355543 -100933119 + L2 LINE L2 2577 2659 -655 222 37 0 0 chr4 83356904 83356931 -100931731 + (GA)n Simple_repeat Simple_repeat 2 28 0 28 29 0 0 chr4 83357239 83357274 -100931388 + AT_rich Low_complexity Low_complexity 1 35 0 549 236 170 0 chr4 83360331 83360496 -100928166 - MIR SINE MIR -68 194 2 329 289 8 31 chr4 83360512 83360640 -100928022 + (TATATG)n Simple_repeat Simple_repeat 2 126 0 408 99 127 0 chr4 83362851 83362922 -100925740 + MADE1 DNA Mariner 1 80 0 228 337 33 11 chr4 83363029 83363121 -100925541 - MER5B DNA MER1_type -83 95 2 1941 154 0 3 chr4 83363314 83363612 -100925050 + AluSx SINE Alu 1 297 -15 1938 34 0 0 chr4 83363967 83364201 -100924461 + L1PA2 LINE L1 5922 6155 0 28 48 0 0 chr4 83364647 83364689 -100923973 + AT_rich Low_complexity Low_complexity 1 42 0 259 247 47 0 chr4 83364837 83364922 -100923740 - L1MC/D LINE L1 -2010 5798 5710 * 280 284 17 68 chr4 83364891 83364929 -100923733 - L1ME LINE L1 -262 5859 5821 332 64 0 0 chr4 83364929 83364976 -100923686 - L1MA9 LINE L1 0 6312 6266 280 284 17 68 chr4 83364976 83365160 -100923502 - L1ME LINE L1 -300 5821 5635 386 301 75 20 chr4 83365348 83365494 -100923168 - MER5B DNA MER1_type -24 154 1 22 0 0 0 chr4 83365653 83365675 -100922987 + AT_rich Low_complexity Low_complexity 1 22 0 496 274 22 30 chr4 83366002 83366137 -100922525 - L3 LINE CR1 -18 1559 1426 314 355 24 8 chr4 83366281 83366405 -100922257 - L3 LINE CR1 -496 1081 956 373 253 118 56 chr4 83366643 83366821 -100921841 - L3 LINE CR1 -820 757 569 2223 4 0 0 chr4 83366821 83367060 -100921602 - AluYb8 SINE Alu -13 305 67 4552 206 39 19 chr4 83417060 83417264 -100871398 - L1 LINE L1 -2910 3236 3038 2516 84 0 0 chr4 83417264 83417575 -100871087 - AluY SINE Alu 0 311 1 4552 206 39 19 chr4 83417575 83418460 -100870202 - L1 LINE L1 -3108 3038 2125 2165 105 7 3 chr4 83418913 83419209 -100869453 - AluSg SINE Alu -13 297 1 338 286 13 0 chr4 83419773 83419850 -100868812 + MER58 DNA MER1_type 1 78 -308 543 172 45 52 chr4 83419850 83419984 -100868678 - FRAM SINE Alu -1 175 43 1853 119 0 0 chr4 83420094 83420362 -100868300 + AluSx SINE Alu 39 306 0 24 0 0 0 chr4 83420576 83420600 -100868062 + AT_rich Low_complexity Low_complexity 1 24 0 38 61 0 0 chr4 83420978 83421044 -100867618 + AT_rich Low_complexity Low_complexity 1 66 0 2352 88 0 3 chr4 83421088 83421382 -100867280 + AluSx SINE Alu 1 293 -19 2130 127 3 19 chr4 83421382 83421698 -100866964 + AluSx SINE Alu 1 311 -1 1274 249 63 10 chr4 83421708 83421895 -100866767 - L1MB8 LINE L1 -6 6172 5996 1758 139 0 36 chr4 83421895 83422176 -100866486 - AluSx SINE Alu -5 307 37 1274 249 63 10 chr4 83422176 83422401 -100866261 - L1MB8 LINE L1 -182 5996 5738 1808 218 121 62 chr4 83422620 83422859 -100865803 + L1MC4 LINE L1 6660 6883 -1159 1480 182 4 0 chr4 83422859 83423106 -100865556 + AluJo SINE Alu 43 290 -22 1808 218 121 62 chr4 83423106 83423126 -100865536 + L1MC4 LINE L1 6883 6900 -1142 2054 108 18 4 chr4 83423126 83423455 -100865207 + AluSq SINE Alu 1 333 0 1808 218 121 62 chr4 83423455 83423889 -100864773 + L1MC4 LINE L1 6900 7396 -646 366 261 37 64 chr4 83424046 83424234 -100864428 + L1MC4 LINE L1 7794 7976 -66 1406 202 51 20 chr4 83424265 83424557 -100864105 + AluJo SINE Alu 1 301 -11 977 178 0 0 chr4 83425439 83425596 -100863066 + FRAM SINE Alu 1 157 -9 4181 158 14 11 chr4 83425826 83426524 -100862138 - MER50 LTR ERV1 -23 711 12 189 273 227 52 chr4 83426528 83426722 -100861940 + MIR SINE MIR 26 253 -9 2844 188 16 40 chr4 83427092 83427697 -100860965 + L1MCa LINE L1 373 963 -5463 1650 157 0 25 chr4 83427713 83427999 -100860663 + AluJb SINE Alu 29 307 -5 825 213 12 0 chr4 83428004 83428164 -100860498 + FRAM SINE Alu 1 156 -20 1611 117 17 0 chr4 83428167 83428398 -100860264 + AluSg/x SINE Alu 65 299 -11 2168 100 31 3 chr4 83428410 83428700 -100859962 + AluSx SINE Alu 1 298 -14 1156 212 0 0 chr4 83428702 83428914 -100859748 + AluJo SINE Alu 1 212 -100 1716 107 0 53 chr4 83429014 83429095 -100859567 + AluSx SINE Alu 64 148 -164 2550 52 0 0 chr4 83429095 83429400 -100859262 + AluYa5 SINE Alu 1 305 -6 1716 107 0 53 chr4 83429400 83429580 -100859082 + AluSx SINE Alu 148 311 -1 2340 94 3 35 chr4 83429580 83429788 -100858874 + L1MA3 LINE L1 5978 6172 -133 2258 117 0 0 chr4 83429788 83430088 -100858574 + AluSx SINE Alu 1 300 -12 2340 94 3 35 chr4 83430088 83430218 -100858444 + L1MA3 LINE L1 6172 6305 0 227 326 42 0 chr4 83430384 83430479 -100858183 + MER20B DNA MER1_type 43 141 -642 2853 225 24 58 chr4 83430490 83430844 -100857818 - L1M4 LINE L1 -1042 5104 4739 690 175 79 32 chr4 83430844 83430970 -100857692 - FLAM_C SINE Alu -1 132 1 2853 225 24 58 chr4 83430970 83431195 -100857467 - L1M4 LINE L1 -1407 4739 4558 1879 150 3 3 chr4 83431195 83431488 -100857174 + AluJb SINE Alu 7 299 -13 2853 225 24 58 chr4 83431488 83431717 -100856945 - L1M4 LINE L1 -1588 4558 4323 1345 183 43 0 chr4 83431742 83432022 -100856640 + AluJo SINE Alu 44 333 0 1544 210 54 11 chr4 83432022 83432394 -100856268 - L1M4 LINE L1 -1816 4330 3943 484 129 47 0 chr4 83433126 83433211 -100855451 + L1M4 LINE L1 5182 5270 -876 21 0 0 0 chr4 83433274 83433295 -100855367 + AT_rich Low_complexity Low_complexity 1 21 0 389 138 35 46 chr4 83433321 83433408 -100855254 + L1M4 LINE L1 5245 5330 -816 1506 82 0 44 chr4 83433412 83433618 -100855044 + AluY SINE Alu 1 197 -114 2381 99 0 3 chr4 83434677 83434990 -100853672 - AluSq SINE Alu 0 313 2 431 234 49 102 chr4 83435816 83435892 -100852770 - L2 LINE L2 -557 2757 2678 1997 148 17 0 chr4 83435892 83436183 -100852479 + AluSx SINE Alu 1 296 -16 431 234 49 102 chr4 83436183 83436311 -100852351 - L2 LINE L2 -636 2678 2564 2127 127 3 3 chr4 83436628 83436928 -100851734 - AluSx SINE Alu -12 300 1 827 199 23 11 chr4 83436950 83437126 -100851536 + AluJb SINE Alu 130 307 -5 657 181 9 4 chr4 83437133 83437364 -100851298 + GA-rich Low_complexity Low_complexity 1 232 0 551 158 105 0 chr4 83437441 83437536 -100851126 + FLAM_A SINE Alu 18 122 -20 326 182 18 0 chr4 83438333 83438388 -100850274 + Tigger2 DNA MER2_type 1 56 -2662 576 202 0 0 chr4 83438392 83438491 -100850171 - MER8 DNA MER2_type -96 143 45 522 232 184 0 chr4 83438996 83439164 -100849498 - L1ME1 LINE L1 -27 6139 5941 1067 164 10 29 chr4 83439270 83439478 -100849184 + AluJo SINE Alu 109 312 0 192 315 54 54 chr4 83439706 83439798 -100848864 + MIR SINE MIR 51 142 -66 2280 90 3 0 chr4 83439804 83440092 -100848570 + AluSp SINE Alu 1 289 -24 294 184 122 92 chr4 83440108 83440206 -100848456 - L2 LINE L2 -17 3296 3196 1770 156 0 7 chr4 83440267 83440537 -100848125 + AluSx SINE Alu 1 268 -44 574 248 163 50 chr4 83440588 83440796 -100847866 - L2 LINE L2 -378 2936 2678 1391 94 139 0 chr4 83440796 83440998 -100847664 + MER30 DNA MER1_type 1 230 0 574 248 163 50 chr4 83440998 83441108 -100847554 - L2 LINE L2 -636 2678 2582 2438 63 0 3 chr4 83441691 83441991 -100846671 + AluY SINE Alu 1 299 -12 2786 80 119 5 chr4 83442561 83442963 -100845699 - LTR7 LTR ERV1 -2 448 1 2524 80 48 13 chr4 83442963 83443340 -100845322 - HERVH LTR ERV1 0 7713 7324 1370 126 23 0 chr4 83443340 83443555 -100845107 - HERVH LTR ERV1 -1894 5819 5600 5502 122 6 0 chr4 83443556 83444336 -100844326 - HERVH LTR ERV1 -2564 5149 4365 824 111 0 0 chr4 83444436 83444544 -100844118 - AluSg SINE Alu -202 108 1 462 291 51 0 chr4 83444549 83444724 -100843938 - L1ME1 LINE L1 -262 5908 5725 2501 77 0 0 chr4 83445031 83445330 -100843332 + AluSx SINE Alu 3 301 -11 345 199 5 140 chr4 83445332 83445601 -100843061 + LTR38B LTR ERV1 27 194 -362 349 253 47 72 chr4 83445690 83446004 -100842658 + LTR38B LTR ERV1 302 611 0 2887 91 13 69 chr4 83446032 83446484 -100842178 + L1PA14 LINE L1 5735 6161 0 234 241 80 9 chr4 83446735 83446847 -100841815 - L1MEd LINE L1 -5222 897 778 955 220 0 12 chr4 83447038 83447211 -100841451 + FAM SINE Alu 1 171 -4 2315 85 7 0 chr4 83447214 83447509 -100841153 + AluSq SINE Alu 1 297 -16 1907 113 53 3 chr4 83447511 83447795 -100840867 + AluSx SINE Alu 2 299 -13 26 30 0 0 chr4 83447795 83447828 -100840834 + AT_rich Low_complexity Low_complexity 1 33 0 338 295 142 65 chr4 83447833 83448094 -100840568 - L1MEd LINE L1 -5571 548 268 254 291 64 21 chr4 83448184 83448325 -100840337 - L1MEd LINE L1 -5971 148 2 378 255 112 31 chr4 83448350 83448511 -100840151 - L1MC5 LINE L1 -31 7930 7757 369 264 92 37 chr4 83448563 83448726 -100839936 - L1MC5 LINE L1 -554 7407 7236 238 212 30 50 chr4 83448719 83448818 -100839844 - L1MC5 LINE L1 -212 7749 7653 * 293 175 35 126 chr4 83448866 83448917 -100839745 - L1MC5 LINE L1 -311 7650 7596 902 165 0 0 chr4 83448917 83449050 -100839612 + FLAM_C SINE Alu 1 133 0 293 175 35 126 chr4 83449050 83449141 -100839521 - L1MC5 LINE L1 -365 7596 7521 841 178 25 0 chr4 83449197 83449354 -100839308 + MLT1B LTR MaLR 1 161 -229 3047 82 15 0 chr4 83449354 83449743 -100838919 - L1PA8 LINE L1 0 6172 5778 1109 74 7 27 chr4 83449743 83449892 -100838770 - AluSp SINE Alu -167 146 1 2489 67 3 0 chr4 83449892 83450220 -100838442 - L1PA8 LINE L1 -956 5190 4862 425 108 81 0 chr4 83450262 83450336 -100838326 + MLT1B LTR MaLR 311 390 0 1849 231 79 46 chr4 83450375 83451071 -100837591 - L1MC5 LINE L1 -554 7407 6689 915 165 0 0 chr4 83451362 83451495 -100837167 - FLAM_C SINE Alu 0 133 1 1468 206 7 42 chr4 83451678 83451988 -100836674 - AluJo SINE Alu -9 303 5 477 263 108 36 chr4 83452121 83452291 -100836371 + HAL1b LINE L1 546 745 -603 2391 64 6 16 chr4 83452291 83452605 -100836057 + AluY SINE Alu 1 311 0 477 263 108 36 chr4 83452605 83452712 -100835950 + HAL1b LINE L1 745 843 -505 * 20973 133 28 21 chr4 83452702 83455654 -100833008 + L1MA3 LINE L1 16 2947 -4618 1314 190 9 83 chr4 83455654 83455991 -100832671 + AluJo SINE Alu 1 312 0 20973 133 28 21 chr4 83455991 83456321 -100832341 + L1MA3 LINE L1 2947 3273 -4292 2433 85 7 0 chr4 83456321 83456627 -100832035 + AluSg SINE Alu 1 308 -2 20973 133 28 21 chr4 83456627 83456649 -100832013 + L1MA3 LINE L1 3273 3293 -4272 1635 199 0 0 chr4 83456649 83456935 -100831727 + AluJo SINE Alu 1 286 -26 20973 133 28 21 chr4 83456935 83456991 -100831671 + L1MA3 LINE L1 3293 3400 -4165 10850 156 15 19 chr4 83457091 83458759 -100829903 + L1MA3 LINE L1 4754 6427 -1292 2096 120 7 3 chr4 83458759 83459051 -100829611 + AluSq SINE Alu 5 297 -16 10850 156 15 19 chr4 83459051 83460028 -100828634 + L1MA3 LINE L1 6427 7406 -313 728 174 35 9 chr4 83460028 83460143 -100828519 + FLAM_C SINE Alu 1 118 -15 10850 156 15 19 chr4 83460143 83460177 -100828485 + L1MA3 LINE L1 7406 7439 -280 2110 111 0 44 chr4 83460177 83460312 -100828350 + AluSx SINE Alu 10 149 -163 2876 3 0 0 chr4 83460312 83460617 -100828045 + AluYa5 SINE Alu 1 305 -6 2110 111 0 44 chr4 83460617 83460796 -100827866 + AluSx SINE Alu 149 310 -2 10850 156 15 19 chr4 83460796 83461006 -100827656 + L1MA3 LINE L1 7439 7601 -118 782 122 0 17 chr4 83461011 83461126 -100827536 + AluSq/x SINE Alu 5 117 -196 22297 169 34 33 chr4 83461228 83462014 -100826648 - L1 LINE L1 -1693 5872 5088 1286 178 0 17 chr4 83462014 83462250 -100826412 - AluJb SINE Alu 0 312 81 22297 169 34 33 chr4 83462250 83467260 -100821402 - L1 LINE L1 -2477 5088 12 1513 179 33 40 chr4 83467264 83467566 -100821096 - AluJo SINE Alu -12 300 1 802 181 0 0 chr4 83467772 83467888 -100820774 - FLAM_A SINE Alu -17 116 1 2155 126 0 7 chr4 83467972 83468303 -100820359 - AluSx SINE Alu 0 312 1 1800 224 41 70 chr4 83468909 83469467 -100819195 + MER34 LTR ERV1 1 542 0 254 308 94 16 chr4 83469547 83469746 -100818916 + L1MB8 LINE L1 5723 5930 -248 183 100 0 0 chr4 83469748 83469778 -100818884 + (CA)n Simple_repeat Simple_repeat 2 31 0 1666 135 76 17 chr4 83470058 83470158 -100818504 + AluJb SINE Alu 1 94 -218 4376 186 128 125 chr4 83470158 83471908 -100816754 + MER52A LTR ERV1 1 1755 0 1666 135 76 17 chr4 83471908 83472095 -100816567 + AluJb SINE Alu 94 305 -7 991 305 58 20 chr4 83472233 83472627 -100816035 + L2 LINE L2 2884 3292 -21 1576 189 37 17 chr4 83472941 83473237 -100815425 - AluJo SINE Alu -10 302 1 466 118 29 0 chr4 83473266 83473334 -100815328 - FLAM SINE Alu -24 119 50 2381 89 0 0 chr4 83474056 83474359 -100814303 - AluSc SINE Alu -6 303 1 2418 83 3 0 chr4 83474853 83475154 -100813508 + AluY SINE Alu 1 302 -9 24 53 0 0 chr4 83478653 83478691 -100809971 + AT_rich Low_complexity Low_complexity 1 38 0 297 238 41 0 chr4 83480138 83480260 -100808402 + (TA)n Simple_repeat Simple_repeat 1 127 0 443 48 0 16 chr4 83480275 83480338 -100808324 + (TAGA)n Simple_repeat Simple_repeat 2 63 0 1484 179 57 10 chr4 83480458 83480755 -100807907 + AluJo SINE Alu 1 311 -1 875 186 49 59 chr4 83481777 83481849 -100806813 + AluJb SINE Alu 85 156 -167 2196 99 0 23 chr4 83481849 83482152 -100806510 + AluSx SINE Alu 3 298 -14 875 186 49 59 chr4 83482152 83482320 -100806342 + AluJb SINE Alu 156 323 0 332 285 88 35 chr4 83482422 83482650 -100806012 + L2 LINE L2 1838 2077 -1237 368 123 0 14 chr4 83482666 83482739 -100805923 + L1MA8 LINE L1 6220 6291 0 1383 202 46 38 chr4 83483169 83483536 -100805126 + MLT1A2 LTR MaLR 1 505 0 2349 94 0 7 chr4 83483945 83484254 -100804408 + AluSg SINE Alu 1 307 -3 750 259 0 24 chr4 83484537 83484707 -100803955 - FRAM SINE Alu 0 166 1 2917 177 83 26 chr4 83485076 83485727 -100802935 - L1MA7 LINE L1 -4 6287 5600 938 192 0 23 chr4 83486127 83486304 -100802358 + L1PA8 LINE L1 5993 6165 -7 624 179 0 0 chr4 83486335 83486430 -100802232 + FRAM SINE Alu 65 159 -17 1242 173 12 16 chr4 83487291 83487539 -100801123 + L1MB3 LINE L1 5111 5357 -789 1183 181 19 5 chr4 83487545 83487761 -100800901 + L1MB3 LINE L1 5462 5680 -503 1175 124 0 12 chr4 83487763 83487932 -100800730 - AluJo SINE Alu -10 302 136 2429 162 30 12 chr4 83487934 83488365 -100800297 + L1MB3 LINE L1 5676 6114 -69 25 0 0 0 chr4 83489151 83489176 -100799486 + AT_rich Low_complexity Low_complexity 1 25 0 943 119 6 63 chr4 83489641 83489800 -100798862 + AluSq/x SINE Alu 1 150 -163 369 168 32 11 chr4 83489938 83490033 -100798629 + MER58B DNA MER1_type 98 194 -147 643 187 8 60 chr4 83490047 83490069 -100798593 - AluJo SINE Alu -175 127 105 2105 116 0 3 chr4 83490069 83490363 -100798299 + AluSx SINE Alu 1 293 -19 643 187 8 60 chr4 83490363 83490474 -100798188 - AluJo SINE Alu -197 105 1 713 224 7 7 chr4 83490487 83490630 -100798032 + MER58B DNA MER1_type 184 326 -15 278 239 42 56 chr4 83491102 83491244 -100797418 + MARNA DNA Mariner 317 456 -130 201 196 0 0 chr4 83491302 83491348 -100797314 + (TA)n Simple_repeat Simple_repeat 1 46 0 1954 138 17 0 chr4 83491618 83491909 -100796753 + AluJo SINE Alu 1 296 -16 367 252 103 94 chr4 83492129 83492470 -100796192 + L2 LINE L2 2966 3309 -4 1924 155 0 3 chr4 83492637 83492927 -100795735 + AluJo SINE Alu 1 289 -23 2314 104 0 10 chr4 83493490 83493799 -100794863 + AluSg SINE Alu 1 306 -4 785 197 0 0 chr4 83493830 83493962 -100794700 + FLAM_C SINE Alu 1 132 -1 2096 130 0 3 chr4 83494154 83494454 -100794208 + AluSx SINE Alu 1 299 -13 225 0 0 0 chr4 83495042 83495067 -100793595 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 252 0 0 0 chr4 83495066 83495094 -100793568 + (TA)n Simple_repeat Simple_repeat 1 28 0 2061 148 0 0 chr4 83495095 83495393 -100793269 - AluSx SINE Alu -14 298 1 216 97 0 0 chr4 83495431 83495462 -100793200 + (A)n Simple_repeat Simple_repeat 1 31 0 1741 187 0 0 chr4 83495723 83496007 -100792655 + AluSx SINE Alu 2 285 -27 180 0 0 0 chr4 83496011 83496031 -100792631 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2333 94 7 0 chr4 83496468 83496766 -100791896 - AluSp SINE Alu -13 300 1 705 204 8 0 chr4 83496774 83496906 -100791756 - FLAM_A SINE Alu 0 133 1 1979 123 10 16 chr4 83496918 83497228 -100791434 - AluSx SINE Alu -4 308 1 271 221 58 12 chr4 83497537 83497623 -100791039 - MIR SINE MIR -81 181 92 302 0 26 0 chr4 83497673 83497711 -100790951 + (TTG)n Simple_repeat Simple_repeat 1 39 0 770 225 7 0 chr4 83497713 83497864 -100790798 - FRAM SINE Alu -14 152 1 21 36 0 0 chr4 83498002 83498030 -100790632 + AT_rich Low_complexity Low_complexity 1 28 0 1792 177 13 10 chr4 83498036 83498207 -100790455 - AluSx SINE Alu -9 303 129 2347 83 0 3 chr4 83498207 83498495 -100790167 - AluSc SINE Alu -22 287 1 1792 177 13 10 chr4 83498495 83498623 -100790039 - AluSx SINE Alu -183 129 3 388 306 86 73 chr4 83499427 83499495 -100789167 - L2 LINE L2 -19 3253 3187 2306 109 0 3 chr4 83499495 83499798 -100788864 + AluSg SINE Alu 1 302 -8 388 306 86 73 chr4 83499798 83500043 -100788619 - L2 LINE L2 -85 3187 2936 2147 123 29 59 chr4 83500066 83500108 -100788554 - THE1B LTR MaLR 0 364 322 2443 92 10 0 chr4 83500108 83500414 -100788248 + AluSc SINE Alu 1 309 0 2147 123 29 59 chr4 83500414 83500746 -100787916 - THE1B LTR MaLR -42 322 1 498 325 155 14 chr4 83501001 83501588 -100787074 - L2 LINE L2 -842 2472 1803 2268 116 0 0 chr4 83502216 83502518 -100786144 + AluSx SINE Alu 1 302 -10 1605 147 88 21 chr4 83502703 83502988 -100785674 + AluJo SINE Alu 1 304 -8 1444 239 25 40 chr4 83503019 83503420 -100785242 + LTR16A LTR ERVL 56 450 0 1711 132 0 0 chr4 83503584 83503827 -100784835 - AluSx SINE Alu -69 243 1 742 178 11 122 chr4 83503981 83504086 -100784576 + MER45A DNA AcHobo 2 80 -1501 1712 169 10 30 chr4 83504086 83504382 -100784280 - AluJb SINE Alu -16 296 7 742 178 11 122 chr4 83504382 83504456 -100784206 + MER45A DNA AcHobo 80 161 -17 2366 109 0 0 chr4 83504983 83505285 -100783377 - AluSx SINE Alu -10 302 1 26 50 0 0 chr4 83506075 83506115 -100782547 + AT_rich Low_complexity Low_complexity 1 40 0 2291 71 28 0 chr4 83506122 83506404 -100782258 + AluSc SINE Alu 5 294 -15 1308 96 0 27 chr4 83506553 83506565 -100782097 + AluSc SINE Alu 123 134 -175 2430 86 0 6 chr4 83506565 83506879 -100781783 + AluSx SINE Alu 1 312 0 1308 96 0 27 chr4 83506879 83507054 -100781608 + AluSc SINE Alu 134 305 -4 438 169 0 24 chr4 83507595 83507678 -100780984 + AluJ/FRAM SINE Alu 223 303 -9 2181 106 3 7 chr4 83507812 83508115 -100780547 - AluSq SINE Alu -11 302 1 2173 104 0 71 chr4 83509444 83509781 -100778881 - AluSq SINE Alu 0 313 1 185 343 27 0 chr4 83510794 83510867 -100777795 + MIR SINE MIR 186 260 -2 711 147 0 0 chr4 83510981 83511090 -100777572 - FLAM_C SINE Alu -24 119 11 571 144 144 40 chr4 83511100 83511195 -100777467 + L1MCa LINE L1 1823 1907 -4519 1831 129 0 0 chr4 83511195 83511443 -100777219 - AluY SINE Alu -63 248 1 571 144 144 40 chr4 83511443 83511520 -100777142 + L1MCa LINE L1 1907 2013 -4413 1485 236 31 72 chr4 83511520 83512265 -100776397 + L1MCa LINE L1 3199 3912 -2514 182 103 0 0 chr4 83512300 83512329 -100776333 + MER5A DNA MER1_type 41 69 -120 681 151 0 9 chr4 83512335 83512441 -100776221 + U6 snRNA snRNA 1 105 -2 352 177 38 0 chr4 83512599 83512678 -100775984 - MER5B DNA MER1_type -78 100 19 1481 188 33 33 chr4 83512869 83512983 -100775679 + AluJo SINE Alu 9 122 -190 243 61 0 0 chr4 83512983 83513016 -100775646 + (TA)n Simple_repeat Simple_repeat 1 33 0 1481 188 33 33 chr4 83513016 83513038 -100775624 + AluJo SINE Alu 122 143 -169 1630 170 92 9 chr4 83513038 83513355 -100775307 - MER61A LTR ERV1 0 343 1 1481 188 33 33 chr4 83513355 83513520 -100775142 + AluJo SINE Alu 142 311 -1 22 35 0 0 chr4 83513654 83513683 -100774979 + AT_rich Low_complexity Low_complexity 1 29 0 2201 89 58 0 chr4 83514121 83514412 -100774250 + AluSq SINE Alu 1 308 -5 2203 86 0 4 chr4 83514772 83515079 -100773583 + AluSc SINE Alu 1 306 0 2319 75 0 3 chr4 83516297 83516613 -100772049 - AluSc SINE Alu 0 315 1 703 149 58 0 chr4 83516809 83516930 -100771732 + FLAM_C SINE Alu 1 128 -5 813 65 219 0 chr4 83517449 83517572 -100771090 - LTR12 LTR ERV1 -560 154 5 1059 136 0 7 chr4 83517572 83517727 -100770935 - AluSq SINE Alu -159 154 1 1826 176 3 3 chr4 83518175 83518476 -100770186 - AluJo SINE Alu -11 301 1 1155 224 121 62 chr4 83518797 83519327 -100769335 - MER68 LTR ERV1 -1 561 1 675 83 21 0 chr4 83519554 83519650 -100769012 + AluSg/x SINE Alu 201 298 -12 2118 132 10 0 chr4 83519663 83519966 -100768696 + AluSx SINE Alu 1 306 -6 2103 118 23 7 chr4 83520014 83520318 -100768344 + AluSx SINE Alu 1 309 -3 189 0 0 0 chr4 83520654 83520675 -100767987 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 345 47 0 0 chr4 83520817 83520860 -100767802 + (CA)n Simple_repeat Simple_repeat 2 44 0 597 198 26 0 chr4 83520868 83520984 -100767678 - FLAM_A SINE Alu -14 119 1 1265 162 48 13 chr4 83521217 83521445 -100767217 - AluJo SINE Alu -6 306 71 803 206 0 12 chr4 83521580 83521745 -100766917 + FAM SINE Alu 1 44 -5 727 259 32 0 chr4 83521856 83522045 -100766617 - L1PA16 LINE L1 -16 6150 5956 2021 132 0 10 chr4 83522045 83522349 -100766313 - AluY SINE Alu -10 301 1 3024 211 113 93 chr4 83522885 83523535 -100765127 + L2 LINE L2 513 1149 -2165 1670 176 0 17 chr4 83523535 83523825 -100764837 - AluJo SINE Alu -16 296 12 3024 211 113 93 chr4 83523825 83524315 -100764347 + L2 LINE L2 1149 1628 -1686 2155 107 3 10 chr4 83524315 83524615 -100764047 - AluSc SINE Alu -11 298 1 2025 129 7 0 chr4 83524615 83524894 -100763768 - AluJo SINE Alu -7 305 25 3024 211 113 93 chr4 83524894 83525061 -100763601 + L2 LINE L2 1627 1848 -1466 361 122 60 48 chr4 83525061 83525144 -100763518 + MLT1G1 LTR MaLR 466 595 0 755 157 33 0 chr4 83525210 83525331 -100763331 + AluJ SINE Alu 1 125 -187 924 216 53 0 chr4 83525343 83525412 -100763250 - AluJo SINE Alu -112 200 136 186 43 0 0 chr4 83525412 83525435 -100763227 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 924 216 53 0 chr4 83525435 83525555 -100763107 - AluJo SINE Alu -176 136 1 * 955 164 11 48 chr4 83525555 83525743 -100762919 + AluJ SINE Alu 117 297 -15 304 374 32 12 chr4 83525798 83526047 -100762615 + HERV16 LTR ERVL 915 1168 -3828 451 367 54 6 chr4 83526236 83526552 -100762110 + HERV16 LTR ERVL 1492 1822 -3942 372 181 24 24 chr4 83526589 83526672 -100761990 - MER20 DNA MER1_type 0 219 137 2351 290 75 36 chr4 83526752 83527382 -100761280 + HERV16 LTR ERVL 3769 4450 -1314 2382 85 0 3 chr4 83527382 83527677 -100760985 + AluSx SINE Alu 3 296 -16 2351 290 75 36 chr4 83527677 83527990 -100760672 + HERV16 LTR ERVL 4450 4749 -1015 2137 134 0 3 chr4 83528011 83528309 -100760353 + AluSx SINE Alu 1 297 -15 1553 182 28 7 chr4 83528334 83528625 -100760037 + AluJo SINE Alu 11 307 -5 1129 251 94 32 chr4 83528660 83529066 -100759596 + L2 LINE L2 2868 3298 -15 1805 113 48 27 chr4 83529084 83529377 -100759285 - L1PB1 LINE L1 -1 6150 5852 752 193 15 0 chr4 83529475 83529610 -100759052 - MER58B DNA MER1_type -4 337 201 314 325 251 4 chr4 83529879 83530150 -100758512 - L2 LINE L2 -9 3304 2967 1663 90 4 37 chr4 83530261 83530506 -100758156 - AluY SINE Alu -54 257 21 3598 135 72 2 chr4 83530514 83531123 -100757539 - L1MB3 LINE L1 -52 6131 5480 2545 97 13 56 chr4 83531288 83531624 -100757038 + THE1C LTR MaLR 1 319 -56 1988 153 10 0 chr4 83531624 83531931 -100756731 + AluSq SINE Alu 1 310 -3 2545 97 13 56 chr4 83531931 83531986 -100756676 + THE1C LTR MaLR 319 375 0 10184 105 33 49 chr4 83531986 83532968 -100755694 + THE1C-int LTR MaLR 1 950 -630 1985 108 96 35 chr4 83532968 83533311 -100755351 + THE1B LTR MaLR 1 364 0 10184 105 33 49 chr4 83533311 83533933 -100754729 + THE1C-int LTR MaLR 950 1580 0 2684 96 22 3 chr4 83533935 83534301 -100754361 + THE1C LTR MaLR 3 375 0 1238 146 56 7 chr4 83534509 83534804 -100753858 - L1MB3 LINE L1 -690 5490 5178 1655 163 48 10 chr4 83534805 83535094 -100753568 + AluJb SINE Alu 1 300 -12 1208 142 0 0 chr4 83535127 83535296 -100753366 - AluJb SINE Alu -10 302 134 2118 169 50 12 chr4 83535332 83535752 -100752910 - L1MB3 LINE L1 -984 5162 4727 1090 200 18 27 chr4 83535780 83536005 -100752657 - MER58A DNA MER1_type 0 224 2 195 250 0 0 chr4 83536161 83536205 -100752457 - L2 LINE L2 -3 3310 3267 2153 113 35 57 chr4 83536358 83536730 -100751932 - THE1B LTR MaLR 0 364 1 417 368 35 13 chr4 83536730 83536961 -100751701 + L2 LINE L2 2579 2814 -500 667 199 26 13 chr4 83537179 83537335 -100751327 - MIR SINE MIR -67 195 38 683 119 30 0 chr4 83537364 83537465 -100751197 + U6 snRNA snRNA 2 105 -2 1565 187 42 0 chr4 83537479 83537762 -100750900 + AluJb SINE Alu 13 307 -5 1895 115 7 15 chr4 83537764 83538061 -100750601 + AluSq SINE Alu 17 311 0 571 296 17 6 chr4 83538146 83538325 -100750337 + MER5A DNA MER1_type 8 188 -1 262 290 54 47 chr4 83538528 83538738 -100749924 + MIR SINE MIR 16 220 -42 262 250 0 0 chr4 83539278 83539330 -100749332 + LTR30 LTR ERV1 1 52 -670 1431 135 385 3 chr4 83539330 83539657 -100749005 + pTR5 LTR ERV1 1555 2006 -432 359 265 26 0 chr4 83539657 83539774 -100748888 + LTR30 LTR ERV1 524 643 -79 685 167 0 0 chr4 83539774 83539876 -100748786 + LTR12 LTR ERV1 613 714 0 934 130 0 0 chr4 83539994 83540125 -100748537 + FLAM_C SINE Alu 1 131 -2 2059 128 0 4 chr4 83540616 83540928 -100747734 - AluSq SINE Alu 0 314 4 192 185 0 0 chr4 83540929 83540983 -100747679 + (TA)n Simple_repeat Simple_repeat 1 54 0 244 33 0 0 chr4 83540983 83541013 -100747649 - Alu SINE Alu -14 286 257 222 262 187 0 chr4 83541427 83541534 -100747128 + MER5A DNA MER1_type 61 187 -2 207 0 0 0 chr4 83542510 83542533 -100746129 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 297 0 0 0 chr4 83542532 83542565 -100746097 + (TG)n Simple_repeat Simple_repeat 2 34 0 790 167 0 0 chr4 83542565 83542691 -100745971 - FLAM_C SINE Alu -17 126 1 321 164 2 0 chr4 83542691 83542750 -100745912 - Alu SINE Alu -3 299 248 811 181 48 0 chr4 83543126 83543292 -100745370 - L1MB4 LINE L1 -2 6178 6005 1078 136 0 75 chr4 83543300 83543325 -100745337 - AluSg/x SINE Alu -9 301 276 1163 92 25 0 chr4 83543325 83543488 -100745174 - L1MA3 LINE L1 0 6305 6139 210 37 0 0 chr4 83543491 83543518 -100745144 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1078 136 0 75 chr4 83543518 83543687 -100744975 - AluSg/x SINE Alu -36 274 118 5963 129 12 9 chr4 83543687 83543992 -100744670 - L1MA2 LINE L1 -173 6131 5829 2063 96 54 0 chr4 83543992 83544272 -100744390 - AluY SINE Alu -16 295 1 5963 129 12 9 chr4 83544272 83545158 -100743504 - L1MA2 LINE L1 -475 5829 4931 1614 167 30 0 chr4 83545258 83545522 -100743140 + AluJb SINE Alu 28 299 -13 2172 98 3 20 chr4 83545537 83545842 -100742820 + AluY SINE Alu 2 301 -10 473 272 20 20 chr4 83546665 83546812 -100741850 + MER5A DNA MER1_type 40 186 -3 436 261 116 51 chr4 83546911 83547126 -100741536 - MIR SINE MIR 0 262 34 2358 142 34 0 chr4 83547177 83547529 -100741133 + THE1B LTR MaLR 1 364 0 10749 110 53 30 chr4 83547529 83549074 -100739588 + THE1B-int LTR MaLR 1 1580 0 292 77 0 0 chr4 83549075 83549114 -100739548 + THE1B LTR MaLR 13 51 -377 219 219 56 125 chr4 83550007 83550167 -100738495 - MIR SINE MIR -1 261 113 31392 98 14 28 chr4 83550211 83553196 -100735466 + L1PA7 LINE L1 164 3190 -3279 2402 85 0 0 chr4 83553196 83553489 -100735173 + AluY SINE Alu 1 293 -18 31392 98 14 28 chr4 83553489 83553512 -100735150 + L1PA7 LINE L1 3190 3212 -3257 2424 97 0 0 chr4 83553512 83553821 -100734841 + AluY SINE Alu 1 309 -2 31392 98 14 28 chr4 83553821 83557095 -100731567 + L1PA7 LINE L1 3212 6446 -23 264 309 43 32 chr4 83558071 83558165 -100730497 + L2 LINE L2 3164 3258 -14 3362 117 45 0 chr4 83558327 83558799 -100729863 + MER1A DNA MER1_type 37 529 0 205 279 0 44 chr4 83560615 83560683 -100727979 + L2 LINE L2 3237 3301 -12 843 135 23 23 chr4 83560975 83561108 -100727554 + FLAM_C SINE Alu 1 133 0 2385 104 0 0 chr4 83561901 83562209 -100726453 + AluSx SINE Alu 1 308 -4 1415 170 0 4 chr4 83563186 83563415 -100725247 - AluSc SINE Alu -81 228 1 660 230 17 46 chr4 83563425 83563599 -100725063 + L1ME LINE L1 5561 5729 -437 1739 105 0 0 chr4 83564279 83564508 -100724154 + AluSg/x SINE Alu 76 304 -6 437 115 33 0 chr4 83565531 83565592 -100723070 + MER57B LTR ERV1 316 378 -56 24 32 0 0 chr4 83565595 83565626 -100723036 + AT_rich Low_complexity Low_complexity 1 31 0 271 184 9 114 chr4 83565802 83565916 -100722746 + L1MEc LINE L1 1268 1369 -5238 465 232 75 61 chr4 83565968 83566248 -100722414 + L1MEc LINE L1 1181 1649 -4958 1897 166 11 61 chr4 83566454 83566527 -100722135 - MER2 DNA MER2_type 0 344 269 1763 175 0 7 chr4 83566527 83566818 -100721844 + AluJb SINE Alu 1 289 -23 1897 166 11 61 chr4 83566818 83567106 -100721556 - MER2 DNA MER2_type -75 269 1 6205 110 22 7 chr4 83567331 83568658 -100720004 - HERVH LTR ERV1 -3171 4562 3140 478 130 0 6 chr4 83568702 83568833 -100719829 - LTR7 LTR ERV1 -231 219 1 2041 113 24 14 chr4 83568907 83569200 -100719462 + AluSx SINE Alu 1 296 -16 2972 217 123 49 chr4 83569211 83569379 -100719283 + L1MC4a LINE L1 6165 6319 -1489 2234 101 16 3 chr4 83569379 83569685 -100718977 + AluSx SINE Alu 3 312 0 2972 217 123 49 chr4 83569685 83570111 -100718551 + L1MC4a LINE L1 6319 6712 -1096 2106 95 18 3 chr4 83570111 83570394 -100718268 + AluSq SINE Alu 5 291 -22 2972 217 123 49 chr4 83570394 83570861 -100717801 + L1MC4a LINE L1 6712 7808 0 22 35 0 0 chr4 83573055 83573084 -100715578 + AT_rich Low_complexity Low_complexity 1 29 0 2059 112 10 3 chr4 83573247 83573543 -100715119 + AluSx SINE Alu 1 298 -14 24 0 0 0 chr4 83573604 83573628 -100715034 + AT_rich Low_complexity Low_complexity 1 24 0 2270 112 3 0 chr4 83573853 83574157 -100714505 + AluSx SINE Alu 1 305 -7 1169 175 18 31 chr4 83574179 83574402 -100714260 + AluJo SINE Alu 1 220 -92 239 150 0 0 chr4 83574403 83574443 -100714219 + AluJo SINE Alu 87 126 -176 7900 8 0 0 chr4 83574456 83575328 -100713334 - L1HS LINE L1 0 6155 5284 694 202 0 24 chr4 83575328 83575452 -100713210 + AluJo SINE Alu 117 237 -75 23 78 0 0 chr4 83575559 83575610 -100713052 + AT_rich Low_complexity Low_complexity 1 51 0 204 264 73 73 chr4 83575984 83576094 -100712568 - MIR3 SINE MIR -12 196 87 231 348 53 37 chr4 83576570 83576757 -100711905 - L2 LINE L2 -1504 1810 1621 21 0 0 0 chr4 83577294 83577315 -100711347 + AT_rich Low_complexity Low_complexity 1 21 0 2934 80 13 13 chr4 83577321 83577358 -100711304 + THE1C LTR MaLR 1 37 -338 2237 103 7 0 chr4 83577358 83577650 -100711012 - AluSx SINE Alu -18 294 1 2934 80 13 13 chr4 83577650 83577987 -100710675 + THE1C LTR MaLR 36 375 0 2089 148 0 3 chr4 83578053 83578364 -100710298 - AluSx SINE Alu -2 310 1 1847 150 104 112 chr4 83578511 83578892 -100709770 - MLT1D LTR MaLR -2 503 125 2340 89 0 0 chr4 83578892 83579184 -100709478 + AluSg SINE Alu 14 305 -5 1847 150 104 112 chr4 83579184 83579309 -100709353 - MLT1D LTR MaLR -380 125 1 251 202 22 67 chr4 83579370 83579459 -100709203 + MER34B LTR ERV1 31 115 -450 318 148 99 59 chr4 83579751 83579852 -100708810 + MER34 LTR ERV1 433 537 -5 284 296 100 65 chr4 83580153 83580268 -100708394 - L2 LINE L2 -2427 887 777 1977 213 92 50 chr4 83580268 83580655 -100708007 - MLT1E3 LTR MaLR 0 624 202 2322 89 3 10 chr4 83580655 83580958 -100707704 - AluSx SINE Alu -9 303 3 1977 213 92 50 chr4 83580958 83581166 -100707496 - MLT1E3 LTR MaLR -422 202 4 284 296 100 65 chr4 83581166 83581371 -100707291 - L2 LINE L2 -2537 777 556 190 216 0 0 chr4 83581382 83581419 -100707243 + MIR SINE MIR 19 55 -207 2167 107 7 0 chr4 83581491 83581780 -100706882 + AluSc SINE Alu 1 291 -18 2322 87 0 3 chr4 83631780 83632091 -100656571 - AluSx SINE Alu 0 310 1 1319 145 50 0 chr4 83632658 83632900 -100655762 - L1MA9 LINE L1 0 6312 6059 820 174 0 22 chr4 83632931 83633069 -100655593 - FLAM_C SINE Alu -7 136 2 230 283 19 75 chr4 83633558 83633664 -100654998 - L2 LINE L2 -1 3312 3213 2452 87 3 0 chr4 83634347 83634658 -100654004 - AluSp SINE Alu -1 312 1 1414 96 61 0 chr4 83634737 83634962 -100653700 + AluSg/x SINE Alu 76 312 0 255 77 0 0 chr4 83635033 83635072 -100653590 - MER41B LTR ERV1 -86 549 511 904 56 38 10 chr4 83635809 83636203 -100652459 + (TA)n Simple_repeat Simple_repeat 1 405 0 2223 77 3 3 chr4 83636212 83636497 -100652165 + AluSc SINE Alu 1 285 -24 30 0 0 0 chr4 83636498 83636528 -100652134 + AT_rich Low_complexity Low_complexity 1 30 0 851 283 60 12 chr4 83636562 83636965 -100651697 - L1ME4a LINE L1 -67 6054 5633 841 271 62 62 chr4 83636965 83637322 -100651340 - MER34 LTR ERV1 0 542 183 2291 110 3 0 chr4 83637322 83637631 -100651031 - AluSg SINE Alu 0 310 1 841 271 62 62 chr4 83637631 83637760 -100650902 - MER34 LTR ERV1 -358 184 56 1812 150 15 85 chr4 83638387 83638786 -100649876 - MER93b LTR ERV1 -2 371 1 279 209 108 108 chr4 83639177 83639252 -100649410 - L2 LINE L2 -1 3271 3194 2041 137 0 16 chr4 83639252 83639567 -100649095 + AluSx SINE Alu 1 310 -2 279 209 108 108 chr4 83639567 83639620 -100649042 - L2 LINE L2 -77 3195 3143 2257 102 3 10 chr4 83639732 83640035 -100648627 - AluSg SINE Alu -9 301 1 2192 207 0 3 chr4 83640194 83640556 -100648106 + MLT1A1 LTR MaLR 1 361 -4 24 32 0 0 chr4 83640894 83640925 -100647737 + AT_rich Low_complexity Low_complexity 1 31 0 869 195 39 163 chr4 83641166 83641674 -100646988 - MER65A LTR ERV1 0 445 1 1448 109 106 141 chr4 83641738 83642050 -100646612 + AluJb SINE Alu 1 301 -1 350 165 41 25 chr4 83642074 83642195 -100646467 + G-rich Low_complexity Low_complexity 4 126 0 433 289 41 66 chr4 83642424 83642621 -100646041 - MLT1H LTR MaLR -222 327 136 3983 178 49 5 chr4 83642625 83643377 -100645285 - MER52A LTR ERV1 -1 1754 970 2464 228 36 58 chr4 83643369 83644063 -100644599 - MER52A LTR ERV1 -1076 679 1 * 901 213 166 78 chr4 83644066 83644530 -100644132 + MLT1H LTR MaLR 1 549 0 520 250 205 10 chr4 83644783 83644983 -100643679 + MLT1H1 LTR MaLR 32 270 -285 2867 135 49 5 chr4 83645025 83645454 -100643208 + MER83 LTR ERV1 1 448 0 954 194 6 0 chr4 83645503 83645678 -100642984 - L1M4 LINE L1 -400 5784 5609 960 149 0 0 chr4 83645722 83645863 -100642799 - FLAM_C SINE Alu -2 141 1 2317 82 3 0 chr4 83646003 83646297 -100642365 + AluSg SINE Alu 1 295 -15 363 318 184 7 chr4 83646298 83646581 -100642081 + L2 LINE L2 2977 3309 -4 1515 173 63 0 chr4 83647009 83647280 -100641382 - AluJb SINE Alu -24 288 1 2236 114 3 0 chr4 83647526 83647825 -100640837 - AluSq SINE Alu -13 300 1 356 155 14 0 chr4 83648015 83648086 -100640576 + L1MB4 LINE L1 6106 6177 -3 2414 82 0 13 chr4 83648129 83648444 -100640218 - AluY SINE Alu 0 311 1 925 184 31 66 chr4 83648561 83648757 -100639905 - MER5A DNA MER1_type 0 189 1 1955 318 187 28 chr4 83648968 83649412 -100639250 + L2 LINE L2 315 687 -2627 1185 194 9 65 chr4 83649412 83649644 -100639018 - MER20 DNA MER1_type 0 219 1 1955 318 187 28 chr4 83649644 83650397 -100638265 + L2 LINE L2 687 1319 -1995 2528 65 7 0 chr4 83650397 83650704 -100637958 - AluSg SINE Alu -1 309 1 1955 318 187 28 chr4 83650704 83650963 -100637699 + L2 LINE L2 1319 2003 -1311 1687 135 7 38 chr4 83650963 83651251 -100637411 - Tigger7 DNA MER2_type 0 2587 2309 930 205 30 0 chr4 83651252 83651418 -100637244 - Tigger7 DNA MER2_type -2316 171 1 1634 157 67 0 chr4 83651420 83651723 -100636939 + AluJo SINE Alu 1 321 0 745 311 101 44 chr4 83651848 83652130 -100636532 + L2 LINE L2 2832 3151 -162 2085 111 10 3 chr4 83652130 83652428 -100636234 - AluSx SINE Alu -12 300 1 745 311 101 44 chr4 83652428 83652599 -100636063 + L2 LINE L2 3151 3311 -2 686 289 66 4 chr4 83652909 83653151 -100635511 + MIR SINE MIR 2 258 -4 2140 107 4 0 chr4 83654019 83654327 -100634335 + AluSx SINE Alu 1 309 0 2599 159 12 7 chr4 83654336 83654745 -100633917 + LTR57 LTR ERVL 1 411 0 1141 250 26 20 chr4 83654745 83655049 -100633613 - L1ME3 LINE L1 -22 6140 5835 982 145 0 14 chr4 83655083 83655228 -100633434 - FRAM SINE Alu -16 160 18 21 0 0 0 chr4 83656083 83656104 -100632558 + AT_rich Low_complexity Low_complexity 1 21 0 624 320 134 22 chr4 83656173 83656711 -100631951 + L1MC/D LINE L1 4725 5322 -824 1808 209 23 98 chr4 83656733 83657292 -100631370 + LTR26E LTR ERV1 3 610 -12 438 261 118 20 chr4 83657309 83657512 -100631150 + L1MC/D LINE L1 5344 5566 -2242 339 265 39 4 chr4 83657607 83657721 -100630941 + L1MC/D LINE L1 5561 5674 -469 2192 112 0 10 chr4 83658072 83658375 -100630287 + AluSx SINE Alu 1 300 -12 302 233 0 0 chr4 83658375 83658435 -100630227 + MER116 DNA Mariner 21 80 0 29 47 0 0 chr4 83659285 83659328 -100629334 + AT_rich Low_complexity Low_complexity 1 43 0 1199 231 67 93 chr4 83659420 83659529 -100629133 - MER34 LTR ERV1 -6 536 426 2448 100 0 0 chr4 83659529 83659840 -100628822 - AluSx SINE Alu -1 311 1 1199 231 67 93 chr4 83659840 83660280 -100628382 - MER34 LTR ERV1 -116 426 1 615 321 11 42 chr4 83660351 83660449 -100628213 - MIR SINE MIR -4 258 159 1852 181 0 0 chr4 83660449 83660752 -100627910 + AluJo SINE Alu 1 303 -9 615 321 11 42 chr4 83660752 83660918 -100627744 - MIR SINE MIR -103 159 2 534 260 75 17 chr4 83660966 83661139 -100627523 + MIR SINE MIR 67 249 -13 913 76 93 0 chr4 83661485 83661603 -100627059 + AluSq/x SINE Alu 1 129 -183 2259 113 3 0 chr4 83661603 83661904 -100626758 + AluSx SINE Alu 1 302 -10 599 149 44 18 chr4 83661904 83662018 -100626644 - LTR49 LTR ERV1 -66 529 413 * 1865 132 28 0 chr4 83662017 83662306 -100626356 - LTR49 LTR ERV1 -292 303 7 1338 244 153 26 chr4 83662325 83662986 -100625676 - L2 LINE L2 -203 3110 2370 2829 123 51 33 chr4 83663106 83663229 -100625433 + L1MA9 LINE L1 5815 5934 -378 2294 109 3 6 chr4 83663229 83663540 -100625122 + AluSx SINE Alu 1 310 -2 2829 123 51 33 chr4 83663540 83663905 -100624757 + L1MA9 LINE L1 5934 6312 0 780 188 11 54 chr4 83664303 83664347 -100624315 + MER5B DNA MER1_type 1 45 -133 1966 189 42 71 chr4 83664347 83664867 -100623795 - MLT1D LTR MaLR 0 505 1 780 188 11 54 chr4 83664867 83665008 -100623654 + MER5B DNA MER1_type 45 178 0 186 43 0 0 chr4 83665245 83665268 -100623394 + (TTTCC)n Simple_repeat Simple_repeat 3 25 0 453 142 9 38 chr4 83665268 83665374 -100623288 + C-rich Low_complexity Low_complexity 3 105 0 282 192 39 77 chr4 83665484 83665588 -100623074 + L1MC4a LINE L1 5820 5919 -1889 1582 157 33 59 chr4 83665724 83665803 -100622859 - AluJo SINE Alu -15 297 217 4085 113 13 2 chr4 83665803 83666351 -100622311 + MER41A LTR ERV1 1 554 0 1582 157 33 59 chr4 83666351 83666576 -100622086 - AluJo SINE Alu -95 217 1 1285 201 82 34 chr4 83666592 83667057 -100621605 + LTR48B LTR ERV1 1 528 -94 22 0 0 0 chr4 83668129 83668151 -100620511 + AT_rich Low_complexity Low_complexity 1 22 0 1276 188 53 12 chr4 83668197 83668442 -100620220 - AluJo SINE Alu -57 255 1 288 269 146 70 chr4 83668524 83668695 -100619967 - MIR SINE MIR -10 252 69 953 284 92 45 chr4 83668726 83669152 -100619510 + MLT1J2 LTR MaLR 3 448 -2 236 266 161 24 chr4 83669350 83669474 -100619188 + MER103 DNA DNA 10 150 -16 1134 152 33 5 chr4 83670090 83670264 -100618398 + MLT1A1 LTR MaLR 1 179 -186 670 91 10 20 chr4 83670264 83670363 -100618299 + MER4A LTR ERV1 1 98 -566 1933 140 6 22 chr4 83670363 83670714 -100617948 + MER4A LTR ERV1 261 664 0 1007 144 25 6 chr4 83670714 83670874 -100617788 + MLT1A1 LTR MaLR 176 338 -27 3599 150 49 46 chr4 83671370 83672062 -100616600 + LTR8A LTR ERV1 34 727 0 1345 205 95 44 chr4 83672550 83672960 -100615702 + MER110A LTR ERV1 1 431 -37 1545 173 3 37 chr4 83673056 83673351 -100615311 + AluJo SINE Alu 2 286 -26 180 0 0 0 chr4 83673364 83673384 -100615278 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2121 123 0 10 chr4 83673386 83673696 -100614966 + AluSx SINE Alu 2 308 -4 2005 110 11 11 chr4 83673707 83674028 -100614634 + AluSx SINE Alu 1 321 0 196 260 42 52 chr4 83675516 83675612 -100613050 + L2 LINE L2 3215 3309 -4 2138 145 33 38 chr4 83676109 83676282 -100612380 + L1MB4 LINE L1 5652 5824 -356 2263 95 17 3 chr4 83676282 83676576 -100612086 + AluSq SINE Alu 6 303 -10 2138 145 33 38 chr4 83676576 83676822 -100611840 + L1MB4 LINE L1 5824 6069 -111 326 270 124 13 chr4 83677005 83677253 -100611409 + L1ME LINE L1 5352 5629 -492 1719 171 10 33 chr4 83677253 83677557 -100611105 - AluJb SINE Alu -15 297 1 400 219 0 0 chr4 83677575 83677648 -100611014 - FRAM/FAM SINE Alu -105 71 1 662 262 58 16 chr4 83678298 83678489 -100610173 + MIR SINE MIR 7 205 -57 188 183 283 17 chr4 83678516 83678576 -100610086 + MIR SINE MIR 187 262 0 2964 91 8 0 chr4 83679064 83679425 -100609237 + THE1B LTR MaLR 1 364 0 372 262 113 28 chr4 83679700 83679841 -100608821 + MIR SINE MIR 12 164 -98 200 273 0 18 chr4 83679842 83679897 -100608765 + L2 LINE L2 3259 3312 -1 203 209 23 76 chr4 83680183 83680355 -100608307 + (ATGGTG)n Simple_repeat Simple_repeat 5 167 0 268 174 22 87 chr4 83680750 83680934 -100607728 + (ATGGTG)n Simple_repeat Simple_repeat 1 172 0 358 273 124 68 chr4 83681333 83681821 -100606841 + MER34B LTR ERV1 1 565 0 2186 61 4 0 chr4 83682188 83682450 -100606212 + AluY SINE Alu 37 299 -12 21 0 0 0 chr4 83686646 83686667 -100601995 + AT_rich Low_complexity Low_complexity 1 21 0 2235 171 48 139 chr4 83687000 83687210 -100601452 + LTR9 LTR ERV1 1 229 -383 2185 124 7 0 chr4 83687210 83687517 -100601145 + AluSp SINE Alu 1 309 -4 2235 171 48 139 chr4 83687517 83687980 -100600682 + LTR9 LTR ERV1 229 612 0 318 286 41 20 chr4 83688212 83688310 -100600352 - L2 LINE L2 -9 3263 3164 28 91 0 0 chr4 83688734 83688811 -100599851 + AT_rich Low_complexity Low_complexity 1 77 0 718 136 29 0 chr4 83689016 83689119 -100599543 - U6 snRNA snRNA 0 107 2 200 242 358 0 chr4 83689918 83690013 -100598649 + MIR3 SINE MIR 15 143 -65 271 296 91 11 chr4 83691195 83691283 -100597379 - L2 LINE L2 -16 3297 3203 246 176 0 0 chr4 83692486 83692537 -100596125 + GA-rich Low_complexity Low_complexity 2 52 0 364 256 44 0 chr4 83692802 83692892 -100595770 - MER5A DNA MER1_type -83 106 13 784 185 8 0 chr4 83693921 83694051 -100594611 - FLAM_C SINE Alu -11 132 2 1477 184 124 0 chr4 83694294 83694560 -100594102 + AluJo SINE Alu 1 299 -3 623 200 0 27 chr4 83694560 83694670 -100593992 + AluJb SINE Alu 183 289 -23 24 0 0 0 chr4 83695182 83695206 -100593456 + AT_rich Low_complexity Low_complexity 1 24 0 1880 128 35 0 chr4 83696927 83697216 -100591446 - AluJb SINE Alu -13 299 1 310 307 110 40 chr4 83697755 83697983 -100590679 + L1M2 LINE L1 1087 1330 -5519 636 334 119 32 chr4 83698900 83699631 -100589031 - L2 LINE L2 0 3313 2507 2014 153 7 0 chr4 83699812 83700119 -100588543 - AluJb SINE Alu -2 310 2 1622 238 52 6 chr4 83700141 83700607 -100588055 - L1ME3A LINE L1 -9 6161 5674 1554 164 11 8 chr4 83701135 83701397 -100587265 + AluJb SINE Alu 1 263 -49 2334 34 4 0 chr4 83701397 83701663 -100586999 + AluY SINE Alu 32 298 -13 528 140 0 32 chr4 83701668 83701761 -100586901 + L1PA15 LINE L1 6067 6156 -9 1027 190 25 0 chr4 83701959 83702122 -100586540 - FAM SINE Alu -8 167 1 1814 162 0 20 chr4 83702495 83702797 -100585865 + AluJo SINE Alu 9 304 -8 2255 120 0 0 chr4 83702930 83703230 -100585432 + AluSx SINE Alu 1 300 -12 589 305 136 26 chr4 83703458 83703766 -100584896 + MLT1I LTR MaLR 1 342 -67 327 322 0 34 chr4 83703901 83704019 -100584643 - L2 LINE L2 0 3313 3200 249 290 62 0 chr4 83704195 83704313 -100584349 + MIR SINE MIR 37 163 -67 1170 180 45 0 chr4 83705795 83706017 -100582645 - MLT2D LTR ERVL -182 232 1 1165 213 28 28 chr4 83706017 83706266 -100582396 - MIR SINE MIR -8 254 6 459 253 97 19 chr4 83706392 83706546 -100582116 - MIR SINE MIR -78 184 19 838 188 12 35 chr4 83706603 83706773 -100581889 + FRAM SINE Alu 1 166 -10 2200 110 0 0 chr4 83706978 83707270 -100581392 - AluSx SINE Alu -20 292 1 468 0 0 0 chr4 83707364 83707416 -100581246 + (TA)n Simple_repeat Simple_repeat 1 52 0 643 288 145 49 chr4 83707635 83708000 -100580662 + MLT1J LTR MaLR 1 400 -111 3012 147 21 6 chr4 83708000 83708483 -100580179 - MER39 LTR ERV1 -3 704 215 2236 75 58 0 chr4 83708500 83708793 -100579869 + AluY SINE Alu 1 310 -1 982 209 80 29 chr4 83708880 83709119 -100579543 + AluJo SINE Alu 1 251 -61 2486 61 0 3 chr4 83709233 83709529 -100579133 - AluY SINE Alu -16 295 1 953 143 17 6 chr4 83709543 83709718 -100578944 + L1MB8 LINE L1 5321 5497 -681 540 173 43 2 chr4 83709724 83709894 -100578768 + MER21B LTR ERV1 5 217 -646 1018 185 169 0 chr4 83709914 83710035 -100578627 + MER21B LTR ERV1 572 671 -192 192 40 0 0 chr4 83710035 83710060 -100578602 + (AATTG)n Simple_repeat Simple_repeat 2 26 0 1018 185 169 0 chr4 83710060 83710187 -100578475 + MER21B LTR ERV1 671 862 -1 3272 159 31 60 chr4 83710197 83710384 -100578278 + L1MB8 LINE L1 5495 5686 -492 1240 205 65 45 chr4 83710384 83710721 -100577941 - MER2 DNA MER2_type 0 344 1 3272 159 31 60 chr4 83710721 83710860 -100577802 + L1MB8 LINE L1 5686 5827 -351 2089 119 40 7 chr4 83710860 83711162 -100577500 + AluSx SINE Alu 1 312 0 3272 159 31 60 chr4 83711162 83711537 -100577125 + L1MB8 LINE L1 5827 6177 -1 1348 162 96 44 chr4 83711557 83711657 -100577005 + AluJo SINE Alu 17 110 -202 2357 119 24 34 chr4 83711657 83712036 -100576626 - THE1C LTR MaLR 0 375 1 1348 162 96 44 chr4 83712036 83712207 -100576455 + AluJo SINE Alu 110 302 -10 340 383 9 39 chr4 83712210 83712547 -100576115 + L1ME3A LINE L1 5611 5937 -233 1563 174 9 59 chr4 83712555 83712877 -100575785 + AluJo SINE Alu 1 306 -6 2430 158 43 40 chr4 83713527 83713971 -100574691 - MER65A LTR ERV1 0 445 1 322 273 0 0 chr4 83713971 83714048 -100574614 - MER65A-int LTR ERV1 0 4871 4795 1543 215 11 101 chr4 83714078 83714374 -100574288 - MER65A-int LTR ERV1 -60 4811 4569 2332 89 7 3 chr4 83714374 83714676 -100573986 + AluSc SINE Alu 5 307 -2 1543 215 11 101 chr4 83714676 83714835 -100573827 - MER65A-int LTR ERV1 -302 4569 4397 641 177 0 40 chr4 83714881 83715005 -100573657 + AluJb SINE Alu 172 290 -22 192 40 0 0 chr4 83715006 83715031 -100573631 + (CATA)n Simple_repeat Simple_repeat 4 28 0 6385 205 23 67 chr4 83715074 83715551 -100573111 - L1 LINE L1 -1801 4345 3849 213 39 0 0 chr4 83715551 83715577 -100573085 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1469 188 25 14 chr4 83715582 83715858 -100572804 - AluJo SINE Alu -32 280 2 6385 205 23 67 chr4 83715858 83716801 -100571861 - L1 LINE L1 -2301 3845 2957 1042 166 6 12 chr4 83716801 83716970 -100571692 - AluJb SINE Alu -27 285 118 6385 205 23 67 chr4 83716970 83717544 -100571118 - L1 LINE L1 -3189 2957 2359 * 6525 210 7 5 chr4 83717539 83718917 -100569745 - L1 LINE L1 -2608 4957 3578 288 178 0 0 chr4 83718915 83718960 -100569702 - L1 LINE L1 -6504 1061 1017 * 758 160 0 0 chr4 83718966 83719085 -100569577 - L1MC1 LINE L1 -135 6198 6080 8421 97 107 96 chr4 83719123 83720799 -100567863 - pTR5 LTR ERV1 0 2438 743 1111 230 80 75 chr4 83720799 83721252 -100567410 + MSTB2 LTR MaLR 3 457 0 363 290 134 29 chr4 83721401 83721677 -100566985 + L1ME LINE L1 5313 5617 -2191 628 212 28 92 chr4 83721703 83721812 -100566850 + L1MC5 LINE L1 7674 7788 -173 2172 118 0 3 chr4 83721812 83722108 -100566554 + AluSx SINE Alu 1 295 -17 628 212 28 92 chr4 83722108 83722248 -100566414 + L1MC5 LINE L1 7788 7907 -54 242 271 24 24 chr4 83722302 83722387 -100566275 + L1ME LINE L1 5617 5701 -420 5232 152 33 14 chr4 83722675 83723523 -100565139 + MER6 DNA MER2_type 2 865 0 1602 206 21 0 chr4 83723556 83723732 -100564930 - AluJo SINE Alu -9 303 117 267 79 0 0 chr4 83723732 83723770 -100564892 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1602 206 21 0 chr4 83723770 83723880 -100564782 - AluJo SINE Alu -195 117 11 1540 167 62 14 chr4 83723929 83724205 -100564457 + MLT1A1 LTR MaLR 1 289 -76 1284 92 0 49 chr4 83724398 83724582 -100564080 + AluSq SINE Alu 1 175 -138 917 131 0 0 chr4 83724745 83724875 -100563787 + AluSg/x SINE Alu 171 300 -10 1418 205 4 4 chr4 83724900 83725168 -100563494 - AluJo SINE Alu -40 272 5 216 394 30 10 chr4 83725173 83725272 -100563390 - L2 LINE L2 -16 3297 3197 377 259 99 8 chr4 83725322 83725453 -100563209 - MIR SINE MIR -57 205 63 3543 116 41 5 chr4 83725499 83726093 -100562569 + MER4B LTR ERV1 1 779 0 234 387 77 54 chr4 83726137 83726473 -100562189 - L2 LINE L2 -2 3270 2927 2766 151 108 38 chr4 83726649 83727204 -100561458 - LTR49 LTR ERV1 0 595 2 590 255 16 57 chr4 83727527 83727719 -100560943 - MIR SINE MIR -38 224 41 2344 104 0 0 chr4 83728383 83728682 -100559980 - AluSg SINE Alu -11 299 1 255 229 220 8 chr4 83728853 83728971 -100559691 - L1ME4a LINE L1 -9 6112 5970 2070 180 27 16 chr4 83729388 83729837 -100558825 - LTR56 LTR ERV1 -1 436 8 1300 159 76 23 chr4 83730023 83730044 -100558618 - L1MD3 LINE L1 -6 7989 7971 2269 102 7 3 chr4 83730044 83730338 -100558324 - AluSc SINE Alu -14 295 1 1300 159 76 23 chr4 83730338 83730580 -100558082 - L1MD3 LINE L1 -24 7971 7712 3130 133 60 60 chr4 83730663 83730742 -100557920 + LTR49 LTR ERV1 1 79 -516 1828 116 23 36 chr4 83730742 83731043 -100557619 + AluJb SINE Alu 1 297 -15 3130 133 60 60 chr4 83731043 83731558 -100557104 + LTR49 LTR ERV1 78 595 0 1992 98 0 8 chr4 83731682 83731947 -100556715 + AluSq SINE Alu 50 312 -1 496 304 56 60 chr4 83732182 83732432 -100556230 + MLT1K LTR MaLR 13 261 -327 702 202 0 0 chr4 83732453 83732567 -100556095 + FLAM_C SINE Alu 6 119 -24 270 0 0 0 chr4 83732567 83732597 -100556065 + (CA)n Simple_repeat Simple_repeat 2 31 0 784 235 78 23 chr4 83732640 83732857 -100555805 + MLT1K LTR MaLR 353 581 -7 188 167 28 0 chr4 83733102 83733138 -100555524 + L2 LINE L2 3022 3058 -214 2548 147 35 28 chr4 83733223 83733653 -100555009 + Tigger2a DNA MER2_type 1 433 -1 458 319 81 0 chr4 83733991 83734176 -100554486 + L3 LINE CR1 1066 1265 -312 207 416 26 32 chr4 83734235 83734389 -100554273 + L3 LINE CR1 1375 1527 -50 2955 9 0 0 chr4 83734442 83734760 -100553902 + AluYb8 SINE Alu 1 318 0 22 0 0 0 chr4 83734810 83734832 -100553830 + AT_rich Low_complexity Low_complexity 1 22 0 200 189 0 0 chr4 83735045 83735082 -100553580 + (TG)n Simple_repeat Simple_repeat 2 38 0 535 283 40 0 chr4 83735164 83735316 -100553346 + MER5A DNA MER1_type 12 169 -20 3966 150 51 116 chr4 83735484 83736428 -100552234 - MER21A LTR ERV1 -22 909 26 435 119 0 0 chr4 83736428 83736495 -100552167 + (TG)n Simple_repeat Simple_repeat 2 68 0 3966 150 51 116 chr4 83736495 83736509 -100552153 - MER21A LTR ERV1 -905 26 13 23 24 0 24 chr4 83736580 83736600 -100552062 + AT_rich Low_complexity Low_complexity 1 20 -20 1729 162 0 37 chr4 83736600 83736897 -100551765 + AluJb SINE Alu 1 286 -26 23 24 0 24 chr4 83736897 83736917 -100551745 + AT_rich Low_complexity Low_complexity 20 40 0 810 159 0 38 chr4 83736917 83737039 -100551623 + FLAM_C SINE Alu 1 119 -193 288 0 0 0 chr4 83737039 83737071 -100551591 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 27 87 0 0 chr4 83737081 83737150 -100551512 + AT_rich Low_complexity Low_complexity 1 69 0 753 99 0 10 chr4 83737268 83737369 -100551293 - HY3 scRNA scRNA -1 100 1 422 291 71 20 chr4 83737370 83737624 -100551038 - L1ME4a LINE L1 -178 5943 5677 307 245 21 11 chr4 83738011 83738105 -100550557 + LTR33 LTR ERVL 3 97 -424 624 295 87 43 chr4 83738135 83738457 -100550205 + LTR33 LTR ERVL 172 507 -14 2475 128 71 94 chr4 83739075 83739705 -100548957 - MER4B LTR ERV1 0 779 1 392 156 0 13 chr4 83739779 83739856 -100548806 + CT-rich Low_complexity Low_complexity 1 76 0 1027 123 0 11 chr4 83739856 83740035 -100548627 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 583 171 86 0 chr4 83740037 83740142 -100548520 - AluJb SINE Alu -197 115 2 1791 63 0 5 chr4 83740217 83740438 -100548224 + L1PB1 LINE L1 5929 6148 -3 2105 124 3 0 chr4 83740546 83740857 -100547805 - AluSq SINE Alu 0 312 1 497 304 96 64 chr4 83740994 83741424 -100547238 + L2 LINE L2 2135 2597 -717 2148 133 0 7 chr4 83741424 83741724 -100546938 - AluSx SINE Alu -14 298 1 497 304 96 64 chr4 83741724 83741980 -100546682 + L2 LINE L2 2597 2843 -471 707 241 80 32 chr4 83741982 83742169 -100546493 + MIR SINE MIR 57 252 -10 2455 137 60 0 chr4 83742244 83742647 -100546015 - MSTB1 LTR MaLR 0 432 6 2208 104 7 3 chr4 83742647 83742944 -100545718 + AluSx SINE Alu 1 298 -14 470 278 73 94 chr4 83743045 83743333 -100545329 + L2 LINE L2 3031 3312 -1 1672 204 0 28 chr4 83743442 83743760 -100544902 + AluJb SINE Alu 1 309 -3 276 77 0 0 chr4 83743769 83743808 -100544854 + (GGAA)n Simple_repeat Simple_repeat 3 41 0 1018 192 0 0 chr4 83744103 83744275 -100544387 - FRAM SINE Alu -1 175 4 534 325 39 48 chr4 83744333 83744600 -100544062 - MIR SINE MIR 0 262 3 232 132 19 57 chr4 83744796 83744849 -100543813 + L2 LINE L2 3263 3313 0 198 386 63 8 chr4 83745517 83745644 -100543018 - MIR SINE MIR -58 150 17 336 292 92 0 chr4 83745652 83745772 -100542890 - L1ME LINE L1 -296 5825 5695 1953 161 25 3 chr4 83745849 83746166 -100542496 - MLT1A1 LTR MaLR -2 363 40 667 201 24 59 chr4 83746202 83746371 -100542291 + MER58B DNA MER1_type 1 163 -178 3875 168 36 106 chr4 83746399 83746597 -100542065 - MER21B LTR ERV1 -58 805 595 2238 121 0 3 chr4 83746597 83746910 -100541752 + AluSq SINE Alu 1 312 -1 3875 168 36 106 chr4 83746910 83747061 -100541601 - MER21B LTR ERV1 -268 595 435 1948 131 17 13 chr4 83747061 83747359 -100541303 + AluSx SINE Alu 1 299 -13 3875 168 36 106 chr4 83747359 83747860 -100540802 - MER21B LTR ERV1 -428 435 13 839 196 76 0 chr4 83747879 83748037 -100540625 + MER58B DNA MER1_type 172 341 0 1432 127 0 23 chr4 83748902 83749123 -100539539 + MSTB1 LTR MaLR 1 216 -216 1224 144 20 0 chr4 83749127 83749329 -100539333 + HERVH LTR ERV1 5811 6016 -1697 * 3813 91 25 9 chr4 83749322 83749870 -100538792 + HERVH LTR ERV1 7157 7713 0 2663 108 60 21 chr4 83749870 83750303 -100538359 + LTR7 LTR ERV1 1 450 0 2821 190 20 34 chr4 83750307 83750869 -100537793 + Tigger7 DNA MER2_type 22 575 -1912 20753 132 10 13 chr4 83751253 83755870 -100532792 - HERVH LTR ERV1 -1774 5317 1 2750 108 60 21 chr4 83755870 83756303 -100532359 - LTR7 LTR ERV1 0 450 1 1326 173 4 13 chr4 83756386 83756611 -100532051 - MER4B LTR ERV1 0 610 388 394 168 17 13 chr4 83756656 83756777 -100531885 - MER4A LTR ERV1 -223 441 261 573 83 42 21 chr4 83756777 83756873 -100531789 - MER4A LTR ERV1 -566 98 1 * 1057 198 34 53 chr4 83756873 83757129 -100531533 + MER82 DNA MER2_type 39 289 -364 1005 111 129 9 chr4 83757140 83757328 -100531334 + LTR8A LTR ERV1 2 199 -342 999 170 68 163 chr4 83757338 83757464 -100531198 - LTR8 LTR ERV1 -435 256 182 1902 144 206 11 chr4 83757464 83757819 -100530843 + MSTA LTR MaLR 5 428 0 999 170 68 163 chr4 83757819 83757986 -100530676 - LTR8 LTR ERV1 -509 182 1 699 307 53 9 chr4 83758828 83759056 -100529606 + MIR SINE MIR 20 257 -5 3258 125 108 16 chr4 83759214 83759759 -100528903 - LTR49 LTR ERV1 0 595 1 2606 108 43 5 chr4 83759759 83760157 -100528505 - LTR49-int LTR ERV1 0 6331 5919 * 10409 162 59 67 chr4 83760144 83761479 -100527183 - LTR49-int LTR ERV1 -942 5389 4046 2055 134 3 0 chr4 83761479 83761770 -100526892 + AluSx SINE Alu 1 292 -20 10409 162 59 67 chr4 83761770 83762627 -100526035 - LTR49-int LTR ERV1 -2285 4046 3218 1932 113 0 0 chr4 83762627 83762919 -100525743 - AluSg SINE Alu 0 328 37 10409 162 59 67 chr4 83762919 83763491 -100525171 - LTR49-int LTR ERV1 -3113 3218 2643 5947 148 89 40 chr4 83763506 83763789 -100524873 - LTR49-int LTR ERV1 -5049 1282 1014 1499 182 10 36 chr4 83763789 83764091 -100524571 + AluJo SINE Alu 6 299 -13 5947 148 89 40 chr4 83764091 83764945 -100523717 - LTR49-int LTR ERV1 -5317 1014 90 1217 107 0 6 chr4 83764951 83765137 -100523525 + AluSq SINE Alu 128 312 0 638 180 0 0 chr4 83765138 83765238 -100523424 - LTR49-int LTR ERV1 -6231 100 1 1846 125 130 25 chr4 83765240 83765593 -100523069 - LTR49 LTR ERV1 0 595 206 * 2188 138 24 0 chr4 83765583 83765923 -100522739 + MSTA LTR MaLR 81 428 0 227 222 0 0 chr4 83765958 83766003 -100522659 + (TA)n Simple_repeat Simple_repeat 1 45 0 275 130 0 104 chr4 83766003 83766080 -100522582 + LTR66 LTR ERVL 395 463 -147 391 115 26 39 chr4 83766086 83766164 -100522498 + LTR49-int LTR ERV1 1701 1777 -4554 490 107 116 107 chr4 83766193 83766314 -100522348 - LTR49 LTR ERV1 -473 122 1 2724 98 29 54 chr4 83766642 83767050 -100521612 + MER48 LTR ERV1 1 398 0 1172 198 45 4 chr4 83767102 83767343 -100521319 - MER45B DNA AcHobo 0 1040 790 584 206 79 0 chr4 83767343 83767469 -100521193 + MER34C LTR ERV1 1 136 -449 709 174 0 71 chr4 83767470 83767625 -100521037 + pTR5 LTR ERV1 781 924 -1514 3300 32 5 0 chr4 83767625 83767995 -100520667 + L1PA4 LINE L1 5784 6155 0 3540 92 246 2 chr4 83768313 83768866 -100519796 + LTR12 LTR ERV1 1 688 0 2286 160 42 29 chr4 83768866 83769346 -100519316 + MER34C LTR ERV1 96 581 -4 2014 175 37 33 chr4 83769346 83769774 -100518888 - MER45B DNA AcHobo -244 796 367 1886 152 34 3 chr4 83769774 83770070 -100518592 + AluSx SINE Alu 1 305 -7 2089 155 55 32 chr4 83770080 83770481 -100518181 - LTR49 LTR ERV1 -185 410 1 676 287 108 59 chr4 83770550 83770596 -100518066 + MLT1J LTR MaLR 1 43 -468 922 121 15 23 chr4 83770596 83770728 -100517934 - FLAM_C SINE Alu -2 131 1 676 287 108 59 chr4 83770728 83771068 -100517594 + MLT1J LTR MaLR 43 406 -105 4617 64 23 31 chr4 83771068 83772118 -100516544 - MER11A LTR ERVK 0 1266 1 293 265 39 10 chr4 83772118 83772220 -100516442 + MLT1J LTR MaLR 401 505 -6 2308 95 0 7 chr4 83772270 83772565 -100516097 - AluSq SINE Alu -20 293 1 2405 75 3 0 chr4 83772576 83772871 -100515791 - AluY SINE Alu -15 296 1 23 33 0 0 chr4 83773101 83773131 -100515531 + AT_rich Low_complexity Low_complexity 1 30 0 195 114 0 0 chr4 83773393 83773428 -100515234 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 320 259 15 67 chr4 83773841 83773976 -100514686 + MIR SINE MIR 50 177 -85 1932 168 0 13 chr4 83774442 83774757 -100513905 - AluSx SINE Alu -1 311 1 2840 77 19 22 chr4 83774842 83775207 -100513455 - THE1B LTR MaLR 0 364 1 1939 159 3 3 chr4 83775295 83775603 -100513059 + AluJo SINE Alu 5 312 0 1764 177 3 0 chr4 83776142 83776442 -100512220 - AluJo SINE Alu -11 301 1 2196 113 3 13 chr4 83776626 83776926 -100511736 + AluSx SINE Alu 1 297 -15 348 287 9 52 chr4 83776926 83777041 -100511621 + MIR SINE MIR 65 174 -88 514 265 93 114 chr4 83777179 83777511 -100511151 + MLT1K LTR MaLR 183 507 -81 681 298 85 18 chr4 83777526 83777798 -100510864 - MLT1I LTR MaLR -22 387 98 308 217 14 14 chr4 83777859 83777928 -100510734 + MLT1K LTR MaLR 508 576 -12 1462 119 5 23 chr4 83777928 83778146 -100510516 - AluSg/x SINE Alu -14 298 85 273 247 0 65 chr4 83778321 83778398 -100510264 - L2 LINE L2 0 3272 3201 12823 146 47 43 chr4 83778508 83779929 -100508733 + L1MA4 LINE L1 2697 4112 -2188 2170 129 0 0 chr4 83779929 83780232 -100508430 - AluSx SINE Alu -9 303 1 12823 146 47 43 chr4 83780232 83780614 -100508048 + L1MA4 LINE L1 4112 4491 -1809 1861 156 0 0 chr4 83780614 83780890 -100507772 + AluSx SINE Alu 1 276 -36 12823 146 47 43 chr4 83780890 83781395 -100507267 + L1MA4 LINE L1 4491 4993 -1307 2353 107 0 0 chr4 83781395 83781705 -100506957 + AluSq SINE Alu 1 310 -3 12823 146 47 43 chr4 83781705 83782882 -100505780 + L1MA4 LINE L1 4993 6195 -105 2026 119 30 23 chr4 83782882 83783184 -100505478 - AluJb SINE Alu -8 304 1 12823 146 47 43 chr4 83783184 83783286 -100505376 + L1MA4 LINE L1 6195 6295 -5 2218 117 0 0 chr4 83783293 83783584 -100505078 + AluSx SINE Alu 1 291 -21 1352 272 129 19 chr4 83783968 83784002 -100504660 + L2 LINE L2 1885 1914 -1400 1798 141 25 4 chr4 83784002 83784306 -100504356 + AluSq SINE Alu 1 310 0 1352 272 129 19 chr4 83784306 83784982 -100503680 + L2 LINE L2 1914 2754 -560 381 285 146 50 chr4 83784990 83785250 -100503412 + L2 LINE L2 2967 3251 -62 2024 100 7 7 chr4 83785250 83785568 -100503094 + AluSx SINE Alu 1 318 0 355 315 97 35 chr4 83785629 83785826 -100502836 - MIR SINE MIR -36 226 15 881 69 24 26 chr4 83786714 83787322 -100501340 + (TA)n Simple_repeat Simple_repeat 1 606 0 13573 78 6 18 chr4 83887322 83889120 -100399542 - HERVK11 LTR ERVK -6177 1776 1 5143 49 5 10 chr4 83889120 83890151 -100398511 - MER11A LTR ERVK 0 1266 1 4327 60 4 7 chr4 83890151 83890674 -100397988 - LTR10C LTR ERV1 -70 521 1 2106 92 0 4 chr4 83891790 83892093 -100396569 + AluY SINE Alu 11 312 0 26 0 0 0 chr4 83892858 83892884 -100395778 + AT_rich Low_complexity Low_complexity 1 26 0 701 254 45 5 chr4 83892918 83893119 -100395543 + MER20 DNA MER1_type 10 218 -1 1791 198 59 34 chr4 83894124 83894564 -100394098 - MLT2B2 LTR ERVL -64 451 1 2031 129 0 24 chr4 83894814 83895132 -100393530 - AluSx SINE Alu 0 312 1 245 269 108 48 chr4 83895205 83895391 -100393271 + L1ME LINE L1 5507 5703 -418 2077 125 0 3 chr4 83895542 83895838 -100392824 - AluSc SINE Alu -14 295 1 2040 158 0 0 chr4 83895867 83896171 -100392491 + AluSx SINE Alu 1 304 -8 317 251 24 78 chr4 83896296 83896463 -100392199 - L2 LINE L2 -4 3309 3152 2230 249 93 31 chr4 83896479 83897292 -100391370 - L1ME3 LINE L1 -2 6160 5297 230 208 0 0 chr4 83897334 83897382 -100391280 + MLT1G LTR MaLR 462 509 -81 259 216 54 27 chr4 83897387 83897461 -100391201 - HERV9 LTR ERV1 -5666 2733 2658 193 343 178 29 chr4 83997668 83998349 -100290313 + L2 LINE L2 1810 2609 -705 2283 103 7 0 chr4 83998349 83998649 -100290013 + AluSx SINE Alu 1 302 -10 193 343 178 29 chr4 83998649 83998698 -100289964 + L2 LINE L2 2609 2649 -665 666 260 57 0 chr4 83999927 84000104 -100288558 + MIR SINE MIR 76 262 0 285 170 0 0 chr4 84000142 84000189 -100288473 - U6 snRNA snRNA -60 47 1 243 0 0 0 chr4 84001001 84001028 -100287634 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 274 281 175 19 chr4 84001037 84001197 -100287465 - MLT1L LTR MaLR 0 615 431 483 108 0 0 chr4 84001458 84001532 -100287130 + FLAM_C SINE Alu 70 143 0 1886 152 20 7 chr4 84002378 84002681 -100285981 - AluJb SINE Alu -5 307 1 327 254 48 40 chr4 84002746 84002872 -100285790 + L1M LINE L1 5298 5424 -2384 227 77 0 26 chr4 84003047 84003086 -100285576 + (TTTC)n Simple_repeat Simple_repeat 1 38 0 2048 137 0 28 chr4 84003088 84003409 -100285253 - AluJo SINE Alu 0 312 1 21 95 0 0 chr4 84004791 84004854 -100283808 + AT_rich Low_complexity Low_complexity 1 63 0 193 167 0 0 chr4 84004854 84004884 -100283778 - L2 LINE L2 -19 3294 3265 1545 166 72 4 chr4 84005042 84005320 -100283342 + AluJo SINE Alu 1 297 -15 2215 105 0 0 chr4 84005322 84005616 -100283046 + AluSg SINE Alu 1 294 -16 27 49 0 0 chr4 84005674 84005715 -100282947 + AT_rich Low_complexity Low_complexity 1 41 0 2048 107 23 20 chr4 84005857 84006156 -100282506 + AluSx SINE Alu 1 300 -12 2010 133 0 26 chr4 84006697 84007005 -100281657 - AluSx SINE Alu -11 301 2 70 0 0 0 chr4 84007013 84007083 -100281579 + AT_rich Low_complexity Low_complexity 1 70 0 666 182 145 13 chr4 84008949 84009108 -100279554 + MLT1A2 LTR MaLR 195 374 0 3794 200 70 19 chr4 84009119 84009979 -100278683 + L1ME1 LINE L1 5258 6161 -5 252 0 0 0 chr4 84010229 84010257 -100278405 + (TG)n Simple_repeat Simple_repeat 1 28 0 26 50 0 0 chr4 84010698 84010738 -100277924 + AT_rich Low_complexity Low_complexity 1 40 0 2309 88 0 0 chr4 84010853 84011147 -100277515 - AluY SINE Alu -17 294 1 630 196 0 110 chr4 84011315 84011488 -100277174 - AluSg/x SINE Alu -3 309 156 447 281 59 25 chr4 84011850 84012053 -100276609 - MIR SINE MIR -1 261 50 644 227 135 22 chr4 84013253 84013482 -100275180 - MIR SINE MIR -3 259 5 480 228 10 127 chr4 84014747 84014879 -100273783 + MER5B DNA MER1_type 5 108 -70 443 177 186 9 chr4 84014879 84014992 -100273670 - FLAM_A SINE Alu 0 133 1 480 228 10 127 chr4 84014992 84015056 -100273606 + MER5B DNA MER1_type 108 178 0 288 188 14 29 chr4 84015330 84015399 -100273263 + L1ME4a LINE L1 5986 6053 -68 23 0 0 0 chr4 84016113 84016136 -100272526 + AT_rich Low_complexity Low_complexity 1 23 0 623 251 146 10 chr4 84017810 84018009 -100270653 - MIR SINE MIR -31 231 6 2147 92 3 36 chr4 84018127 84018432 -100270230 - AluJb SINE Alu -17 295 1 1411 228 69 18 chr4 84018743 84019077 -100269585 + L1M4b LINE L1 11 361 -6498 386 254 118 41 chr4 84019261 84019481 -100269181 + L1M4b LINE L1 2471 2707 -4431 2160 119 7 0 chr4 84019536 84019838 -100268824 - AluSx SINE Alu -8 304 1 3341 171 16 48 chr4 84019887 84020431 -100268231 + L1MB8 LINE L1 5523 6044 -134 1684 121 14 57 chr4 84020431 84020712 -100267950 + AluJo SINE Alu 34 302 -10 3341 171 16 48 chr4 84020712 84020839 -100267823 + L1MB8 LINE L1 6044 6173 -5 188 371 22 0 chr4 84020875 84020964 -100267698 - MIR SINE MIR -84 124 34 2374 64 0 7 chr4 84021484 84021780 -100266882 - AluY SINE Alu 0 311 18 1201 23 0 0 chr4 84021780 84021905 -100266757 - AluY SINE Alu -183 128 1 198 311 54 0 chr4 84022382 84022456 -100266206 - L2 LINE L2 -339 2975 2898 2765 133 118 8 chr4 84022464 84022962 -100265700 + MER7C DNA MER2_type 2 554 -48 64 0 0 0 chr4 84023130 84023194 -100265468 + AT_rich Low_complexity Low_complexity 1 64 0 591 144 52 0 chr4 84023202 84023299 -100265363 - FLAM_C SINE Alu -40 103 2 287 329 13 0 chr4 84023617 84023693 -100264969 + LTR67 LTR ERVL 114 190 -367 252 252 8 73 chr4 84023921 84024044 -100264618 + LTR33A LTR ERVL 406 520 -3 199 250 147 0 chr4 84024047 84024115 -100264547 + MIR SINE MIR 159 236 -26 2597 166 18 36 chr4 84024128 84024634 -100264028 - MLT2B1 LTR ERVL -23 497 1 2064 163 44 31 chr4 84024848 84025391 -100263271 - MLT2A2 LTR ERVL 0 554 1 405 269 144 12 chr4 84026005 84026165 -100262497 - MER5A DNA MER1_type 0 189 9 1079 177 84 5 chr4 84026181 84026384 -100262278 + MER20 DNA MER1_type 1 219 0 214 309 125 0 chr4 84027438 84027590 -100261072 + L2 LINE L2 2330 2500 -814 553 207 45 81 chr4 84027615 84027813 -100260849 - MLT1A2 LTR MaLR -183 191 1 414 350 46 89 chr4 84028026 84028421 -100260241 + L2 LINE L2 2723 3091 -181 180 0 0 0 chr4 84028421 84028441 -100260221 + (CTCA)n Simple_repeat Simple_repeat 2 21 0 414 350 46 89 chr4 84028441 84028613 -100260049 + L2 LINE L2 3091 3269 -3 2203 206 102 52 chr4 84028874 84029570 -100259092 - L1MC4 LINE L1 -17 8025 7295 1658 128 46 36 chr4 84030299 84030501 -100258161 - MLT1B LTR MaLR -2 388 180 2499 66 7 0 chr4 84030501 84030804 -100257858 - AluY SINE Alu -6 305 1 1658 128 46 36 chr4 84030804 84030907 -100257755 - MLT1B LTR MaLR -210 180 80 38263 89 13 8 chr4 84030914 84037017 -100251645 + L1PA6 LINE L1 11 6146 -8 515 160 21 11 chr4 84037017 84037111 -100251551 - MLT1B LTR MaLR -295 95 1 558 71 0 47 chr4 84037152 84037237 -100251425 + L1MA1 LINE L1 6222 6302 0 23 33 0 0 chr4 84037242 84037272 -100251390 + AT_rich Low_complexity Low_complexity 1 30 0 1273 223 44 20 chr4 84037389 84037685 -100250977 - AluJo SINE Alu -7 305 3 385 200 56 0 chr4 84037962 84038052 -100250610 - MLT1I LTR MaLR -2 407 313 257 257 0 0 chr4 84038052 84038122 -100250540 + MER116 DNA Mariner 1 70 -10 496 271 186 32 chr4 84038134 84038381 -100250281 - MLT1I LTR MaLR -97 312 28 315 122 0 0 chr4 84038445 84038494 -100250168 + (TTCC)n Simple_repeat Simple_repeat 2 50 0 950 138 0 14 chr4 84038496 84038641 -100250021 - AluJb SINE Alu -37 275 133 4502 165 29 57 chr4 84039301 84039615 -100249047 - L1MB8 LINE L1 -5 6173 5852 1890 172 0 0 chr4 84039615 84039917 -100248745 - AluSx SINE Alu -10 302 1 4502 165 29 57 chr4 84039917 84040621 -100248041 - L1MB8 LINE L1 -326 5852 5184 2313 90 0 3 chr4 84040621 84040922 -100247740 - AluY SINE Alu -11 300 1 4502 165 29 57 chr4 84040922 84041191 -100247471 - L1MB8 LINE L1 -994 5184 4909 1998 168 42 6 chr4 84041297 84041654 -100247008 - L1PA16 LINE L1 -20 6146 5777 842 145 0 0 chr4 84041654 84041785 -100246877 - AluSx SINE Alu 0 310 180 12140 18 5 0 chr4 84042178 84044255 -100244407 + L1PA3 LINE L1 4073 6155 0 1250 161 0 0 chr4 84044328 84044514 -100244148 - AluSx SINE Alu -126 186 1 292 102 0 61 chr4 84044514 84044563 -100244099 - L1PA16 LINE L1 -386 5780 5735 1126 122 12 12 chr4 84045631 84045795 -100242867 - AluSc SINE Alu -145 164 1 487 68 0 0 chr4 84045830 84045889 -100242773 + AluSg/x SINE Alu 190 248 -62 2036 119 7 7 chr4 84046027 84046320 -100242342 + AluSc SINE Alu 6 298 -11 2425 82 10 0 chr4 84046961 84047267 -100241395 + AluSc SINE Alu 1 309 0 187 395 58 9 chr4 84048538 84048761 -100239901 + L2 LINE L2 2572 2805 -509 578 195 0 26 chr4 84048761 84048874 -100239788 - FLAM_C SINE Alu -6 137 28 232 288 0 0 chr4 84049040 84049099 -100239563 + CT-rich Low_complexity Low_complexity 5 63 0 212 291 0 0 chr4 84049465 84049520 -100239142 + (TA)n Simple_repeat Simple_repeat 2 56 0 4784 92 1 29 chr4 84049627 84049732 -100238930 + L1PB2 LINE L1 5506 5612 -539 2307 92 0 43 chr4 84049732 84050058 -100238604 + AluSp SINE Alu 2 313 0 4784 92 1 29 chr4 84050058 84050614 -100238048 + L1PB2 LINE L1 5612 6149 -2 2453 59 0 16 chr4 84050638 84050942 -100237720 + AluY SINE Alu 1 299 -12 4378 190 26 29 chr4 84050980 84051064 -100237598 - L1MA9 LINE L1 -38 6274 6191 1128 23 78 0 chr4 84051064 84051192 -100237470 + MER85 DNA T2_type 2 139 0 4378 190 26 29 chr4 84051192 84051910 -100236752 - L1MA9 LINE L1 -121 6191 5473 2458 95 0 0 chr4 84051910 84052216 -100236446 - AluSx SINE Alu -6 306 1 4378 190 26 29 chr4 84052216 84053106 -100235556 - L1MA9 LINE L1 -839 5473 4588 21 0 0 0 chr4 84053263 84053284 -100235378 + AT_rich Low_complexity Low_complexity 1 21 0 15999 152 35 13 chr4 84053327 84055616 -100233046 - L1MA3 LINE L1 -5 7719 5287 2309 84 7 7 chr4 84055616 84055914 -100232748 - AluSq SINE Alu -15 298 1 15999 152 35 13 chr4 84055914 84057724 -100230938 - L1MA3 LINE L1 -2437 5287 3519 506 125 0 0 chr4 84057724 84057796 -100230866 + L1M1 LINE L1 2915 2986 -4579 * 13889 149 30 35 chr4 84057792 84057928 -100230734 - L1MA3 LINE L1 -4057 3508 3373 2149 72 7 0 chr4 84057928 84058204 -100230458 - L1PA13 LINE L1 -3 6160 5883 13889 149 30 35 chr4 84058204 84058752 -100229910 - L1MA3 LINE L1 -4192 3373 2824 1768 188 3 0 chr4 84058752 84059044 -100229618 - AluJb SINE Alu -19 293 1 13889 149 30 35 chr4 84059044 84061509 -100227153 - L1MA3 LINE L1 -4741 2824 17 290 290 140 0 chr4 84062493 84062593 -100226069 - L2 LINE L2 -1 3312 3199 371 230 81 106 chr4 84062601 84062706 -100225956 - MIR SINE MIR -5 257 151 1991 78 68 18 chr4 84062706 84063013 -100225649 - AluY SINE Alu 0 311 1 953 221 0 12 chr4 84063018 84063190 -100225472 - FAM SINE Alu -5 170 1 371 230 81 106 chr4 84063190 84063239 -100225423 - MIR SINE MIR -115 147 101 1877 124 7 0 chr4 84063825 84064098 -100224564 + MLT1B LTR MaLR 1 275 -115 1828 159 10 16 chr4 84064098 84064406 -100224256 + AluJo SINE Alu 2 307 -5 2133 114 10 3 chr4 84064484 84064774 -100223888 + AluSc SINE Alu 1 292 -17 3386 150 36 10 chr4 84066362 84066941 -100221721 - L1MB3 LINE L1 -2 6181 5588 336 264 91 16 chr4 84067801 84067922 -100220740 - L2 LINE L2 0 3313 3184 943 278 97 42 chr4 84067928 84068554 -100220108 + L2 LINE L2 2367 3043 -229 195 184 0 0 chr4 84069537 84069575 -100219087 + (TATG)n Simple_repeat Simple_repeat 3 40 0 284 257 9 71 chr4 84069803 84069916 -100218746 - MIR3 SINE MIR -3 205 100 227 234 16 31 chr4 84069940 84070004 -100218658 - L2 LINE L2 0 3313 3251 2234 113 3 0 chr4 84070257 84070557 -100218105 + AluSq SINE Alu 1 301 -12 455 330 68 6 chr4 84070650 84070826 -100217836 - MIR SINE MIR -28 234 48 2040 117 3 21 chr4 84071058 84071190 -100217472 + AluSx SINE Alu 1 134 -178 180 0 0 0 chr4 84071190 84071210 -100217452 + (TA)n Simple_repeat Simple_repeat 2 21 0 2040 117 3 21 chr4 84071210 84071394 -100217268 + AluSx SINE Alu 134 312 0 1296 202 49 22 chr4 84071627 84072059 -100216603 + MLT1D LTR MaLR 5 503 -2 1906 120 41 14 chr4 84072202 84072494 -100216168 + AluSq SINE Alu 3 302 -11 2103 101 10 27 chr4 84073247 84073563 -100215099 - AluSq SINE Alu 0 311 1 834 127 0 0 chr4 84073591 84073709 -100214953 - AluJb SINE Alu -194 118 1 22 0 0 0 chr4 84074180 84074202 -100214460 + AT_rich Low_complexity Low_complexity 1 22 0 3589 167 81 25 chr4 84074302 84075032 -100213630 + LTR48 LTR ERV1 1 771 -16 2164 124 0 16 chr4 84075113 84075420 -100213242 + AluSc SINE Alu 1 302 -7 237 271 17 0 chr4 84075698 84075757 -100212905 - 7SK RNA RNA -1 192 133 285 286 25 42 chr4 84075802 84075921 -100212741 - 7SK RNA RNA -67 126 10 1288 179 54 5 chr4 84075967 84076190 -100212472 - MLT1C LTR MaLR 0 467 234 482 153 133 0 chr4 84076183 84076281 -100212381 - MLT1C LTR MaLR -348 119 9 * 664 197 23 25 chr4 84076425 84076622 -100212040 + MSTC LTR MaLR 1 194 -171 2155 164 14 16 chr4 84076850 84077216 -100211446 - MLT1A1 LTR MaLR 0 365 1 582 329 34 31 chr4 84077900 84078225 -100210437 + L1ME4a LINE L1 5552 5877 -244 2535 73 3 3 chr4 84078267 84078580 -100210082 - AluSp SINE Alu 0 313 1 709 167 0 0 chr4 84080868 84080970 -100207692 + FLAM_A SINE Alu 25 126 -16 315 122 0 0 chr4 84080982 84081031 -100207631 + (TG)n Simple_repeat Simple_repeat 2 50 0 1508 142 31 23 chr4 84081036 84081297 -100207365 - AluJo SINE Alu -36 276 14 253 267 207 67 chr4 84081381 84081516 -100207146 + L2 LINE L2 3117 3270 -2 2121 106 3 0 chr4 84081908 84082200 -100206462 + AluSx SINE Alu 1 293 -19 2428 64 3 13 chr4 84082202 84082514 -100206148 + AluY SINE Alu 3 311 0 2093 130 0 22 chr4 84082799 84083114 -100205548 - AluSx SINE Alu -4 308 1 22 0 0 0 chr4 84083900 84083922 -100204740 + GC_rich Low_complexity Low_complexity 1 22 0 204 225 0 0 chr4 84085158 84085198 -100203464 + (TG)n Simple_repeat Simple_repeat 2 41 0 1385 153 0 58 chr4 84086332 84086607 -100202055 - AluSx SINE Alu -21 291 33 1542 291 3 72 chr4 84086741 84087074 -100201588 + AluSx SINE Alu 1 310 -2 307 173 148 12 chr4 84087524 84087605 -100201057 + MIR SINE MIR 49 140 -68 189 254 0 34 chr4 84087608 84087667 -100200995 - MIR SINE MIR -51 211 155 193 272 37 88 chr4 84087716 84087784 -100200878 + MIR SINE MIR 16 75 -133 2141 86 6 16 chr4 84087784 84088098 -100200564 - AluY SINE Alu 0 311 1 193 272 37 88 chr4 84088098 84088165 -100200497 + MIR SINE MIR 75 144 -64 188 371 67 9 chr4 84088428 84088533 -100200129 - L2 LINE L2 -9 3263 3153 498 269 129 21 chr4 84088815 84089102 -100199560 - L1ME3 LINE L1 -184 5980 5663 960 201 21 10 chr4 84089114 84089308 -100199354 - MER3 DNA MER1_type 0 209 14 626 301 25 0 chr4 84089393 84089589 -100199073 - L1ME3 LINE L1 -510 5652 5452 379 233 167 56 chr4 84090537 84090717 -100197945 - MIR SINE MIR -6 256 57 482 232 87 36 chr4 84091937 84092075 -100196587 + MIR SINE MIR 100 244 -18 300 206 0 29 chr4 84092121 84092189 -100196473 - MLT1K LTR MaLR -2 586 521 838 226 23 0 chr4 84092228 84092405 -100196257 + MER82 DNA MER2_type 24 204 -449 762 136 24 8 chr4 84092698 84092823 -100195839 + MER82 DNA MER2_type 203 329 -324 2847 7 0 0 chr4 84093689 84093993 -100194669 + AluYa5 SINE Alu 1 304 -7 2177 117 3 7 chr4 84094033 84094341 -100194321 + AluSx SINE Alu 1 307 -5 1751 185 3 7 chr4 84094402 84094694 -100193968 - AluJo SINE Alu -21 291 1 2394 88 3 0 chr4 84095113 84095421 -100193241 - AluSq SINE Alu -4 309 1 2622 162 131 37 chr4 84095901 84095938 -100192724 - L1MB8 LINE L1 -11 6167 6135 2224 102 7 0 chr4 84095938 84096233 -100192429 - AluSp SINE Alu -16 297 1 2622 162 131 37 chr4 84096233 84096820 -100191842 - L1MB8 LINE L1 -43 6135 5484 28 0 0 0 chr4 84097670 84097698 -100190964 + AT_rich Low_complexity Low_complexity 1 28 0 1125 142 0 0 chr4 84098154 84098323 -100190339 - AluSg/x SINE Alu 0 310 142 2365 119 76 15 chr4 84098430 84098773 -100189889 - THE1B LTR MaLR 0 364 1 234 91 0 0 chr4 84099087 84099120 -100189542 + (TG)n Simple_repeat Simple_repeat 1 33 0 1590 173 3 50 chr4 84099360 84099683 -100188979 - AluSx SINE Alu -4 308 1 1541 183 37 17 chr4 84100926 84101226 -100187436 + AluJo SINE Alu 6 311 -1 23 0 0 0 chr4 84101230 84101253 -100187409 + AT_rich Low_complexity Low_complexity 1 23 0 386 331 22 0 chr4 84101391 84101527 -100187135 + MIR3 SINE MIR 7 145 -63 4314 86 9 23 chr4 84101625 84102087 -100186575 - MER41A LTR ERV1 0 554 100 2356 83 0 3 chr4 84102087 84102389 -100186273 + AluSg SINE Alu 1 301 -9 4314 86 9 23 chr4 84102389 84102487 -100186175 - MER41A LTR ERV1 -454 100 2 342 0 0 0 chr4 84104205 84104243 -100184419 + (TG)n Simple_repeat Simple_repeat 1 38 0 212 270 14 27 chr4 84106105 84106179 -100182483 - MIR SINE MIR -46 216 144 2092 134 0 0 chr4 84106696 84107001 -100181661 + AluY SINE Alu 1 305 -6 249 318 103 29 chr4 84108471 84109301 -100179361 + L1ME LINE L1 4872 5776 -345 1368 268 154 47 chr4 84109321 84110222 -100178440 + L2 LINE L2 2203 3289 -24 2194 103 7 0 chr4 84110222 84110512 -100178150 - AluSx SINE Alu -20 292 1 1368 268 154 47 chr4 84110512 84110540 -100178122 + L2 LINE L2 3289 3313 0 3713 155 17 6 chr4 84111075 84111725 -100176937 - L1MB8 LINE L1 0 6178 5522 2293 104 3 0 chr4 84111755 84112053 -100176609 + AluSg SINE Alu 1 299 -11 617 198 0 0 chr4 84112064 84112180 -100176482 + MIR SINE MIR 147 262 0 230 272 141 41 chr4 84112236 84112389 -100176273 - MER5A DNA MER1_type -11 178 1 230 252 25 134 chr4 84112590 84112709 -100175953 + L2 LINE L2 3001 3106 -166 7094 223 79 49 chr4 84112904 84115321 -100173341 - L1ME1 LINE L1 -5 6161 3820 716 199 8 0 chr4 84115321 84115452 -100173210 - FLAM_A SINE Alu -1 132 1 7094 223 79 49 chr4 84115452 84115584 -100173078 - L1ME1 LINE L1 -2346 3820 3694 508 116 63 0 chr4 84115584 84115679 -100172983 - L1MA9 LINE L1 0 6312 6212 7094 223 79 49 chr4 84115679 84116360 -100172302 - L1ME1 LINE L1 -2472 3694 3035 1370 179 91 46 chr4 84116360 84116689 -100171973 - MER2 DNA MER2_type 0 344 1 7094 223 79 49 chr4 84116689 84116727 -100171935 - L1ME1 LINE L1 -3131 3035 3000 2337 110 0 3 chr4 84116727 84117037 -100171625 + AluSq SINE Alu 1 309 -4 7094 223 79 49 chr4 84117037 84117640 -100171022 - L1ME1 LINE L1 -3166 3000 2146 1597 152 64 0 chr4 84117999 84118284 -100170378 + AluSx SINE Alu 1 302 0 472 254 142 51 chr4 84118300 84118631 -100170031 - L1ME4a LINE L1 -11 6110 5750 288 295 18 0 chr4 84118639 84118751 -100169911 - L1ME4a LINE L1 -458 5663 5550 2170 121 10 7 chr4 84120282 84120579 -100168083 + AluSx SINE Alu 1 298 -14 225 310 0 0 chr4 84120993 84121064 -100167598 + L1ME1 LINE L1 523 593 -5937 3567 231 136 13 chr4 84121445 84123045 -100165617 + L1ME1 LINE L1 1016 2814 -3726 2560 157 52 2 chr4 84123049 84123528 -100165134 + L1PA8 LINE L1 1 503 -5372 24320 151 12 23 chr4 84123534 84125960 -100162702 + L1PA8 LINE L1 772 3223 -3238 1935 142 24 0 chr4 84125960 84126248 -100162414 + AluSx SINE Alu 1 295 -17 2209 92 0 3 chr4 84126250 84126552 -100162110 + AluY SINE Alu 1 301 0 24320 151 12 23 chr4 84126552 84128940 -100159722 + L1PA8 LINE L1 3224 5556 -905 3708 115 28 2 chr4 84129040 84129640 -100159022 + L1PA8 LINE L1 5870 6485 -2 2943 246 35 39 chr4 84129641 84130730 -100157932 + L1ME1 LINE L1 2806 3891 -2649 2061 117 3 41 chr4 84130730 84131046 -100157616 + AluSx SINE Alu 1 304 -8 2943 246 35 39 chr4 84131046 84131131 -100157531 + L1ME1 LINE L1 3891 3975 -2565 3328 243 46 40 chr4 84131161 84131357 -100157305 + L1ME1 LINE L1 4262 4455 -2085 1537 206 25 25 chr4 84131357 84131716 -100156946 - MLT1A1 LTR MaLR -2 363 5 3328 243 46 40 chr4 84131716 84132791 -100155871 + L1ME1 LINE L1 4455 5541 -999 2895 220 60 33 chr4 84132820 84133664 -100154998 + L1ME1 LINE L1 5677 6543 -17 654 143 0 0 chr4 84134400 84134498 -100154164 - Tigger7 DNA MER2_type -1 2586 2489 * 1501 176 23 0 chr4 84134496 84134757 -100153905 - Tigger7 DNA MER2_type -466 267 1 405 241 169 42 chr4 84134926 84135092 -100153570 + MIR SINE MIR 1 187 -75 441 214 110 64 chr4 84136637 84137010 -100151652 - HAL1 LINE L1 -72 2435 2046 2154 234 128 48 chr4 84137159 84138242 -100150420 - HAL1 LINE L1 -703 1804 635 486 283 94 11 chr4 84140264 84140455 -100148207 + MIR SINE MIR 23 229 -33 1561 92 5 14 chr4 84140573 84140780 -100147882 - AluSx SINE Alu -107 205 1 597 268 297 19 chr4 84142024 84142850 -100145812 - L2 LINE L2 -3 3310 2265 597 134 40 0 chr4 84143243 84143392 -100145270 + (TA)n Simple_repeat Simple_repeat 1 155 0 30 45 0 0 chr4 84143430 84143474 -100145188 + AT_rich Low_complexity Low_complexity 1 44 0 2536 146 14 14 chr4 84145137 84145563 -100143099 - MSTB LTR MaLR 0 426 1 487 267 58 17 chr4 84145676 84145843 -100142819 - MIR SINE MIR -62 146 12 266 365 43 0 chr4 84146133 84146248 -100142414 + L2 LINE L2 3149 3268 -4 194 248 124 29 chr4 84146630 84146735 -100141927 - L2 LINE L2 -234 3038 2924 23 0 0 0 chr4 84147115 84147138 -100141524 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr4 84147597 84147630 -100141032 + AT_rich Low_complexity Low_complexity 1 33 0 2183 104 3 10 chr4 84149103 84149400 -100139262 - AluSx SINE Alu -17 295 1 222 91 0 0 chr4 84149611 84149644 -100139018 + (TG)n Simple_repeat Simple_repeat 2 34 0 913 152 79 0 chr4 84149672 84149837 -100138825 - MER5B DNA MER1_type 0 178 1 775 237 88 12 chr4 84150863 84151112 -100137550 - LTR16A LTR ERVL -8 442 175 309 277 43 0 chr4 84152277 84152371 -100136291 + MIR3 SINE MIR 102 199 -9 893 208 0 7 chr4 84153090 84153244 -100135418 + FAM SINE Alu 15 167 -18 31 0 0 0 chr4 84153581 84153612 -100135050 + AT_rich Low_complexity Low_complexity 1 31 0 2829 174 29 6 chr4 84154011 84154535 -100134127 - MLT2B3 LTR ERVL -17 537 2 1067 159 62 10 chr4 84154742 84154950 -100133712 + MER20 DNA MER1_type 1 219 0 373 285 32 8 chr4 84156520 84156643 -100132019 + L2 LINE L2 3186 3311 -2 332 241 66 80 chr4 84157932 84158144 -100130518 - L1MC5 LINE L1 -31 7930 7722 479 232 116 28 chr4 84159305 84159340 -100129322 + Charlie8 DNA MER1_type 79 109 -232 1327 139 12 20 chr4 84159340 84159584 -100129078 + L1MB2 LINE L1 5930 6171 0 479 232 116 28 chr4 84159584 84159729 -100128933 + Charlie8 DNA MER1_type 109 275 -66 2029 141 0 0 chr4 84160379 84160670 -100127992 - AluJb SINE Alu -21 291 1 231 344 172 18 chr4 84160827 84160990 -100127672 - MIR3 SINE MIR -3 205 18 556 293 129 22 chr4 84161453 84161678 -100126984 + MIR SINE MIR 4 252 -10 215 308 125 29 chr4 84161679 84161783 -100126879 - L2 LINE L2 -9 3263 3150 26 30 0 0 chr4 84162584 84162617 -100126045 + AT_rich Low_complexity Low_complexity 1 33 0 186 43 0 0 chr4 84164643 84164666 -100123996 + (TG)n Simple_repeat Simple_repeat 2 24 0 1245 199 29 48 chr4 84165484 84165708 -100122954 - MER58B DNA MER1_type -2114 306 88 2106 111 21 0 chr4 84165708 84165996 -100122666 + AluSg SINE Alu 2 295 -15 1245 199 29 48 chr4 84165996 84166083 -100122579 - MER58B DNA MER1_type -2332 88 1 24 67 0 0 chr4 84166147 84166192 -100122470 + AT_rich Low_complexity Low_complexity 1 45 0 215 289 0 26 chr4 84166290 84166366 -100122296 + (TCTG)n Simple_repeat Simple_repeat 2 75 0 289 286 0 14 chr4 84167470 84167540 -100121122 + L2 LINE L2 3244 3312 -1 274 197 40 0 chr4 84167932 84168008 -100120654 - L1MB4 LINE L1 0 6180 6102 264 186 0 0 chr4 84168130 84168173 -100120489 - MER5B DNA MER1_type 0 178 136 1006 312 37 44 chr4 84168392 84168828 -100119834 + HERV16 LTR ERVL 1688 2120 -2876 709 314 131 8 chr4 84168958 84169214 -100119448 - L1M4 LINE L1 -1542 4604 4381 192 77 0 0 chr4 84169214 84169240 -100119422 + (TATG)n Simple_repeat Simple_repeat 4 29 0 709 314 131 8 chr4 84169240 84169487 -100119175 - L1M4 LINE L1 -1765 4381 4039 257 232 0 0 chr4 84169586 84169642 -100119020 - MLT2B1 LTR ERVL 0 520 465 230 254 34 25 chr4 84169692 84169810 -100118852 + (TATATG)n Simple_repeat Simple_repeat 6 124 0 277 189 31 173 chr4 84169811 84169938 -100118724 - MLT2B2 LTR ERVL -51 464 356 25 31 0 0 chr4 84170335 84170367 -100118295 + AT_rich Low_complexity Low_complexity 1 32 0 2133 116 7 0 chr4 84170477 84170778 -100117884 - AluSq SINE Alu -10 303 1 502 261 112 0 chr4 84170905 84171039 -100117623 - MIR SINE MIR -74 188 40 437 137 27 0 chr4 84172336 84172409 -100116253 - AluJ/FRAM SINE Alu -18 294 220 309 277 43 0 chr4 84173374 84173468 -100115194 + MIR3 SINE MIR 102 199 -9 561 69 35 11 chr4 84174115 84174202 -100114460 - L1MB5 LINE L1 -24 6150 6062 518 186 264 67 chr4 84174922 84175115 -100113547 + MIR SINE MIR 22 252 -10 2633 33 0 0 chr4 84177303 84177610 -100111052 + AluY SINE Alu 1 307 -4 393 301 42 7 chr4 84178044 84178187 -100110475 + MIR SINE MIR 37 184 -78 320 272 29 7 chr4 84178328 84178507 -100110155 + (CACCC)n Simple_repeat Simple_repeat 1 182 0 233 290 70 29 chr4 84178600 84178762 -100109900 - MIR SINE MIR -60 202 34 1504 251 117 9 chr4 84178941 84179488 -100109174 - L1ME1 LINE L1 -6 6160 5555 668 224 7 0 chr4 84179596 84179748 -100108914 - MLT1-int LTR MaLR -1218 153 1 2255 149 7 47 chr4 84179753 84180177 -100108485 - MLT2D LTR ERVL -7 407 1 200 207 317 0 chr4 84180369 84180451 -100108211 - MIR SINE MIR -119 143 36 749 325 107 30 chr4 84183236 84183630 -100105032 - L3 LINE CR1 -866 711 288 647 201 77 115 chr4 84183730 84183964 -100104698 - MIR SINE MIR -1 261 37 305 286 80 9 chr4 84184044 84184156 -100104506 + MIR3 SINE MIR 82 201 -7 696 165 0 47 chr4 84184257 84184384 -100104278 - FLAM_A SINE Alu -12 121 1 226 213 213 0 chr4 84185167 84185247 -100103415 + MIR SINE MIR 142 238 -24 2251 78 14 3 chr4 84185570 84185865 -100102797 - AluSq SINE Alu -15 298 1 763 237 5 0 chr4 84186778 84186968 -100101694 - MER3 DNA MER1_type -18 191 1 670 224 7 13 chr4 84187567 84187719 -100100943 + MER8 DNA MER2_type 11 161 -78 1126 190 60 0 chr4 84187736 84188005 -100100657 - L1MA4 LINE L1 -3 6297 6013 302 246 0 0 chr4 84188011 84188076 -100100586 + MER2 DNA MER2_type 281 345 0 1261 150 49 8 chr4 84188084 84188330 -100100332 - L1M4 LINE L1 -360 5818 5563 26 0 0 0 chr4 84188339 84188365 -100100297 + AT_rich Low_complexity Low_complexity 1 26 0 4004 37 2 0 chr4 84188372 84188853 -100099809 - L1PA4 LINE L1 -2 6153 5672 357 304 22 72 chr4 84188960 84189141 -100099521 - MER5B DNA MER1_type 0 178 7 2245 102 0 0 chr4 84189925 84190218 -100098444 - AluSx SINE Alu -2 310 18 329 287 76 53 chr4 84197077 84197398 -100091264 - L1M4 LINE L1 -1537 4609 4223 884 246 18 14 chr4 84198087 84198307 -100090355 - MIR SINE MIR 0 262 42 417 122 0 0 chr4 84199694 84199768 -100088894 + (TCC)n Simple_repeat Simple_repeat 1 74 0 225 247 25 25 chr4 84200047 84200128 -100088534 + (CCG)n Simple_repeat Simple_repeat 2 82 0 436 318 119 17 chr4 84200691 84200927 -100087735 - MER115 DNA AcHobo -277 416 157 11456 165 49 79 chr4 84201150 84201639 -100087023 - L1M4c LINE L1 -913 5469 4967 2488 73 3 0 chr4 84201639 84201940 -100086722 - AluY SINE Alu -9 302 1 11456 165 49 79 chr4 84201940 84202656 -100086006 - L1M4c LINE L1 -1415 4967 4231 1164 172 0 16 chr4 84202656 84202842 -100085820 - AluJb SINE Alu -30 282 100 11456 165 49 79 chr4 84202842 84204071 -100084591 - L1M4c LINE L1 -2151 4231 2975 2467 74 7 0 chr4 84204071 84204380 -100084282 + AluY SINE Alu 1 311 0 11456 165 49 79 chr4 84204380 84205480 -100083182 - L1M4c LINE L1 -3407 2975 1844 877 158 0 8 chr4 84205480 84205613 -100083049 - AluSq/x SINE Alu -181 132 1 1531 276 48 25 chr4 84205648 84206402 -100082260 - L1M4c LINE L1 -4634 1750 980 623 321 55 40 chr4 84206887 84207289 -100081373 - L1M4c LINE L1 -5873 440 33 810 226 77 8 chr4 84207297 84207532 -100081130 - L1MD3 LINE L1 -17 7978 7728 788 151 14 28 chr4 84207928 84208289 -100080373 + CT-rich Low_complexity Low_complexity 1 356 0 180 311 72 48 chr4 84208839 84209006 -100079656 - L2 LINE L2 -353 2961 2791 764 345 111 16 chr4 84209091 84209514 -100079148 - L2 LINE L2 0 3313 2851 204 316 195 35 chr4 84210319 84210493 -100078169 + MIR SINE MIR 3 204 -58 342 45 0 0 chr4 84210554 84210598 -100078064 + (TTCA)n Simple_repeat Simple_repeat 3 46 0 21 0 0 0 chr4 84212246 84212267 -100076395 + AT_rich Low_complexity Low_complexity 1 21 0 334 245 128 10 chr4 84213918 84214020 -100074642 + L2 LINE L2 3155 3268 -4 205 288 0 0 chr4 84215744 84215803 -100072859 + (TA)n Simple_repeat Simple_repeat 1 59 0 221 207 0 17 chr4 84215835 84215893 -100072769 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 700 229 139 74 chr4 84216639 84216840 -100071822 + MIR SINE MIR 1 222 -40 2451 71 3 0 chr4 84216840 84217137 -100071525 + AluSc SINE Alu 5 302 -7 700 229 139 74 chr4 84217137 84217179 -100071483 + MIR SINE MIR 222 260 -2 494 217 29 109 chr4 84219891 84220066 -100068596 + MLT1J2 LTR MaLR 15 175 -275 1788 146 16 22 chr4 84220080 84220395 -100068267 - MER47A DNA MER2_type 0 366 54 1420 274 143 40 chr4 84220599 84221307 -100067355 + L2 LINE L2 1532 2312 -1002 1044 286 111 11 chr4 84221353 84221924 -100066738 + L2 LINE L2 2657 3279 -34 219 353 166 30 chr4 84222138 84222735 -100065927 - L2 LINE L2 -648 2666 1989 210 91 0 0 chr4 84222855 84222888 -100065774 + (TTGGGG)n Simple_repeat Simple_repeat 3 35 0 1557 181 7 17 chr4 84222938 84223230 -100065432 + AluJb SINE Alu 3 291 -21 245 358 138 0 chr4 84223409 84223518 -100065144 - MIR SINE MIR -119 143 20 26 30 0 0 chr4 84223598 84223631 -100065031 + AT_rich Low_complexity Low_complexity 1 33 0 629 188 119 12 chr4 84223841 84224001 -100064661 + MIR SINE MIR 56 232 -30 902 209 34 38 chr4 84224354 84224589 -100064073 + MLT1A1 LTR MaLR 120 353 -12 277 316 0 0 chr4 84225122 84225220 -100063442 + GA-rich Low_complexity Low_complexity 1 98 0 2242 112 0 0 chr4 84226066 84226362 -100062300 + AluSx SINE Alu 1 296 -16 1547 166 3 89 chr4 84226395 84226721 -100061941 - AluJb SINE Alu -14 298 1 400 301 236 36 chr4 84227247 84227632 -100061030 + L2 LINE L2 2282 2743 -571 246 224 179 0 chr4 84227924 84227991 -100060671 + L2 LINE L2 3190 3268 -4 267 261 46 0 chr4 84228184 84228249 -100060413 - L2 LINE L2 0 3313 3246 486 250 79 34 chr4 84228283 84228482 -100060180 - MIR SINE MIR -50 212 16 22 35 0 0 chr4 84228547 84228576 -100060086 + AT_rich Low_complexity Low_complexity 1 29 0 650 71 0 0 chr4 84229702 84229786 -100058876 + MER30B DNA MER1_type 1 84 -106 180 0 0 0 chr4 84230161 84230181 -100058481 + (TTA)n Simple_repeat Simple_repeat 2 21 0 7049 45 11 27 chr4 84230181 84230990 -100057672 - L1PA8 LINE L1 -16 6156 5335 973 9 0 0 chr4 84230990 84231097 -100057565 + U6 snRNA snRNA 1 107 0 7049 45 11 27 chr4 84231097 84231998 -100056664 - L1PA8 LINE L1 -837 5335 4467 996 151 26 0 chr4 84231998 84232150 -100056512 + MER30B DNA MER1_type 75 230 0 2228 86 14 4 chr4 84232740 84233079 -100055583 + L1P2 LINE L1 5268 5610 -544 188 320 88 53 chr4 84233230 84233458 -100055204 - L2 LINE L2 -1766 1548 1313 2679 256 86 81 chr4 84233717 84235190 -100053472 + L2 LINE L2 1796 3278 -35 260 215 185 0 chr4 84235432 84235497 -100053165 - MIR3 SINE MIR -6 202 126 22 0 0 0 chr4 84235962 84235984 -100052678 + AT_rich Low_complexity Low_complexity 1 22 0 33 0 0 0 chr4 84237653 84237686 -100050976 + AT_rich Low_complexity Low_complexity 1 33 0 1786 41 0 0 chr4 84237753 84237973 -100050689 + L1PA4 LINE L1 5933 6152 -3 28 0 0 0 chr4 84237973 84238001 -100050661 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr4 84238656 84238686 -100049976 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 84238869 84238897 -100049765 + AT_rich Low_complexity Low_complexity 1 28 0 1405 138 37 19 chr4 84238955 84239223 -100049439 - L1MA2 LINE L1 0 6304 6032 2081 107 48 0 chr4 84239265 84239556 -100049106 - AluSg SINE Alu -5 305 1 1807 168 43 21 chr4 84239602 84239977 -100048685 + MLT1B LTR MaLR 4 386 -4 269 169 0 34 chr4 84240738 84240797 -100047865 - L1MC5 LINE L1 -54 7907 7851 23 0 0 0 chr4 84245586 84245609 -100043053 + AT_rich Low_complexity Low_complexity 1 23 0 794 288 215 11 chr4 84246240 84246612 -100042050 - L2 LINE L2 -6 3307 2860 233 341 106 8 chr4 84246774 84246897 -100041765 + L2 LINE L2 3137 3271 -1 863 268 41 21 chr4 84248785 84249028 -100039634 - MIR SINE MIR -8 254 7 411 231 179 58 chr4 84249643 84249799 -100038863 - MER5A DNA MER1_type -1 188 14 272 325 51 57 chr4 84250231 84250388 -100038274 + MIR3 SINE MIR 32 187 -21 290 227 289 0 chr4 84252247 84252344 -100036318 - MIR SINE MIR -116 146 22 305 296 93 76 chr4 84252444 84252735 -100035927 - L1M4 LINE L1 -2703 3443 3148 241 200 20 0 chr4 84253620 84253670 -100034992 - MADE1 DNA Mariner -29 51 1 1551 192 31 17 chr4 84253957 84254248 -100034414 - AluJo SINE Alu -17 295 1 25 0 0 0 chr4 84255772 84255797 -100032865 + AT_rich Low_complexity Low_complexity 1 25 0 1637 159 20 58 chr4 84255979 84256164 -100032498 + L1M3 LINE L1 5447 5615 -568 2132 107 3 10 chr4 84256164 84256464 -100032198 - AluSc SINE Alu -9 300 3 1637 159 20 58 chr4 84256464 84256624 -100032038 + L1M3 LINE L1 5615 5779 -404 1901 145 31 0 chr4 84256937 84257227 -100031435 - AluJo SINE Alu -13 299 1 773 224 31 15 chr4 84257351 84257547 -100031115 - MIR SINE MIR 0 262 64 384 248 51 100 chr4 84257637 84257995 -100030667 - L1ME2 LINE L1 -283 5881 5581 2892 153 50 13 chr4 84257995 84258532 -100030130 + MER89 LTR ERV1 1 557 -2 384 248 51 100 chr4 84258532 84258741 -100029921 - L1ME2 LINE L1 -583 5581 5363 2247 120 0 19 chr4 84259984 84260300 -100028362 - AluSx SINE Alu -2 310 1 1119 157 130 8 chr4 84260454 84260716 -100027946 - L1MB8 LINE L1 -1 6177 5884 215 316 15 30 chr4 84263003 84263136 -100025526 + CT-rich Low_complexity Low_complexity 2 132 0 441 234 28 28 chr4 84264609 84264716 -100023946 + MIR3 SINE MIR 97 203 -5 442 198 143 0 chr4 84265130 84265256 -100023406 + MER58C DNA MER1_type 56 199 -16 1018 185 58 0 chr4 84265565 84265754 -100022908 + MIR SINE MIR 47 246 -16 259 283 0 0 chr4 84266140 84266200 -100022462 + MER20B DNA MER1_type 98 157 -626 2028 171 40 3 chr4 84266231 84266583 -100022079 + MLT1A1 LTR MaLR 1 365 0 5796 116 33 11 chr4 84266710 84267723 -100020939 - L1MA4 LINE L1 -5 6295 5261 2220 76 4 0 chr4 84270570 84270846 -100017816 + AluSg1 SINE Alu 1 277 -32 199 0 0 61 chr4 84270848 84270881 -100017781 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1898 163 3 7 chr4 84272268 84272563 -100016099 - AluJo SINE Alu -18 294 1 21 0 0 0 chr4 84272563 84272584 -100016078 + AT_rich Low_complexity Low_complexity 1 21 0 283 225 75 0 chr4 84272827 84272907 -100015755 - Charlie7 DNA MER1_type -2505 107 22 946 214 144 25 chr4 84276879 84277164 -100011498 + MLT1C LTR MaLR 1 319 -148 296 263 211 6 chr4 84277427 84277583 -100011079 + MER112 DNA MER1_type 73 260 0 2074 194 10 15 chr4 84278421 84278819 -100009843 + MSTD LTR MaLR 1 396 0 534 329 106 44 chr4 84279076 84279416 -100009246 + L2 LINE L2 2907 3267 -5 196 307 264 0 chr4 84282593 84282733 -100005929 - MIR SINE MIR -7 255 79 280 282 24 0 chr4 84282884 84282969 -100005693 + MER5A DNA MER1_type 10 96 -93 185 304 0 22 chr4 84283985 84284031 -100004631 + MIR SINE MIR 30 74 -188 21 0 0 0 chr4 84286011 84286032 -100002630 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr4 84286104 84286132 -100002530 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 84287903 84287924 -100000738 + AT_rich Low_complexity Low_complexity 1 21 0 200 222 0 0 chr4 84288627 84288663 -99999999 + (TG)n Simple_repeat Simple_repeat 1 36 0 189 0 0 0 chr4 84289427 84289448 -99999214 + (T)n Simple_repeat Simple_repeat 1 21 0 252 333 69 0 chr4 84289580 84289724 -99998938 - MIR SINE MIR -15 247 94 2223 106 7 3 chr4 84290756 84291059 -99997603 - AluSx SINE Alu -8 304 1 841 200 20 0 chr4 84291178 84291328 -99997334 - FRAM SINE Alu -21 155 3 21 36 0 0 chr4 84292205 84292233 -99996429 + AT_rich Low_complexity Low_complexity 1 28 0 271 250 171 0 chr4 84294016 84294104 -99994558 + L2 LINE L2 3160 3262 -10 209 171 49 0 chr4 84294279 84294320 -99994342 + MIR SINE MIR 204 246 -16 * 217 136 91 23 chr4 84294292 84294336 -99994326 + L2 LINE L2 3264 3310 -3 269 308 92 23 chr4 84294428 84294558 -99994104 + L3 LINE CR1 247 385 -1192 816 348 82 24 chr4 84294637 84294967 -99993695 + L3 LINE CR1 558 867 -710 950 181 27 41 chr4 84294967 84295188 -99993474 + MER20 DNA MER1_type 1 218 -1 816 348 82 24 chr4 84295188 84295596 -99993066 + L3 LINE CR1 867 1339 -238 21 71 0 0 chr4 84295669 84295711 -99992951 + AT_rich Low_complexity Low_complexity 1 42 0 289 271 14 0 chr4 84295833 84295903 -99992759 + L3 LINE CR1 1480 1550 -27 242 263 8 53 chr4 84297497 84297630 -99991032 + A-rich Low_complexity Low_complexity 2 128 0 2125 105 3 41 chr4 84299851 84300166 -99988496 + AluSx SINE Alu 1 303 -9 383 248 116 8 chr4 84300688 84300809 -99987853 + L2 LINE L2 3180 3313 0 2135 211 103 40 chr4 84301324 84302000 -99986662 + L1ME3A LINE L1 5429 6150 -20 1370 116 98 0 chr4 84302000 84302215 -99986447 + MER46A DNA MER2_type 1 236 0 2135 211 103 40 chr4 84302215 84302228 -99986434 + L1ME3A LINE L1 6150 6161 -9 229 402 0 18 chr4 84303148 84303260 -99985402 + MIR3 SINE MIR 67 176 -32 380 257 165 0 chr4 84303830 84303939 -99984723 - MIR SINE MIR -62 146 20 299 273 134 29 chr4 84305547 84305692 -99982970 - MIR SINE MIR -66 142 37 357 272 16 72 chr4 84306272 84306397 -99982265 - L2 LINE L2 -7 3265 3148 207 182 0 45 chr4 84306864 84306908 -99981754 - MIR3 SINE MIR -43 165 124 2420 42 0 11 chr4 84308246 84308551 -99980111 - AluY SINE Alu 0 302 1 21 36 0 0 chr4 84508964 84508992 -99779670 + AT_rich Low_complexity Low_complexity 1 28 0 217 196 22 0 chr4 84509237 84509283 -99779379 + (TA)n Simple_repeat Simple_repeat 2 48 0 396 40 0 0 chr4 84509283 84509333 -99779329 + (TG)n Simple_repeat Simple_repeat 1 50 0 253 344 17 0 chr4 84509338 84509518 -99779144 + L1M4c LINE L1 1265 1447 -4937 305 325 32 38 chr4 84509522 84509679 -99778983 + HAL1b LINE L1 340 495 -853 300 320 33 25 chr4 84510287 84510409 -99778253 + L2 LINE L2 2898 3020 -252 1799 171 13 16 chr4 84510423 84510727 -99777935 - AluJo SINE Alu -9 303 1 1435 274 143 40 chr4 84511251 84511959 -99776703 - L2 LINE L2 -1002 2312 1532 1759 136 16 19 chr4 84512168 84512477 -99776185 + MER47A DNA MER2_type 59 366 0 441 217 29 109 chr4 84512491 84512666 -99775996 - MLT1J2 LTR MaLR -275 175 15 995 190 19 14 chr4 84513083 84513294 -99775368 + AluSq SINE Alu 94 305 -8 6095 153 9 22 chr4 84513527 84513895 -99774767 - L1PB1 LINE L1 -1 6150 5779 2332 113 0 0 chr4 84513895 84514197 -99774465 - AluSq SINE Alu -11 302 1 6095 153 9 22 chr4 84514197 84514209 -99774453 - L1PB1 LINE L1 -372 5779 5768 2355 101 3 3 chr4 84514209 84514515 -99774147 - AluSx SINE Alu -6 306 1 6095 153 9 22 chr4 84514515 84516450 -99772212 - L1PB1 LINE L1 -383 5768 3861 222 221 33 44 chr4 84516508 84516689 -99771973 + (CACAA)n Simple_repeat Simple_repeat 1 179 0 1357 123 5 5 chr4 84516817 84517012 -99771650 + AluSp SINE Alu 107 301 -12 2236 99 3 3 chr4 84517032 84517326 -99771336 - AluSx SINE Alu -16 296 3 1162 201 82 26 chr4 84517330 84517634 -99771028 - Charlie1b DNA MER1_type -202 321 1 560 97 11 0 chr4 84517745 84517838 -99770824 - L1MB3 LINE L1 -2 6181 6088 3627 126 10 0 chr4 84518079 84518601 -99770061 + MER1A DNA MER1_type 1 527 0 272 156 94 0 chr4 84519438 84519502 -99769160 - L1MA9 LINE L1 -38 6274 6205 34 0 0 22 chr4 84519779 84519794 -99768868 + AT_rich Low_complexity Low_complexity 1 15 -29 1187 173 92 78 chr4 84519794 84520077 -99768585 + AluJb SINE Alu 2 288 -14 34 0 0 22 chr4 84520077 84520106 -99768556 + AT_rich Low_complexity Low_complexity 15 44 0 2294 110 0 0 chr4 84520109 84520401 -99768261 - AluSx SINE Alu -20 292 1 22 70 0 0 chr4 84520417 84520460 -99768202 + AT_rich Low_complexity Low_complexity 1 43 0 5819 93 57 0 chr4 84520625 84521610 -99767052 - L1PA10 LINE L1 -9 6159 5143 1865 84 0 8 chr4 84521710 84521961 -99766701 + AluSp SINE Alu 65 313 0 265 221 63 16 chr4 84521976 84522102 -99766560 + Charlie1b DNA MER1_type 355 486 -37 1708 142 68 6 chr4 84522102 84522413 -99766249 - MER2 DNA MER2_type -1 344 15 2370 47 40 7 chr4 84522666 84522966 -99765696 + AluY SINE Alu 1 310 -1 337 286 36 27 chr4 84523586 84523698 -99764964 - L2 LINE L2 -43 3270 3158 223 341 8 24 chr4 84523690 84523813 -99764849 - L2 LINE L2 -925 2389 2269 * 829 113 73 0 chr4 84523815 84523939 -99764723 + FLAM_C SINE Alu 1 133 0 350 190 165 0 chr4 84523940 84524019 -99764643 + MER45 DNA AcHobo 29 120 -58 1848 303 105 22 chr4 84524084 84524896 -99763766 - L2 LINE L2 -1021 2293 1415 3148 161 57 37 chr4 84525057 84525427 -99763235 + L1MB7 LINE L1 4855 5216 -968 2423 90 0 0 chr4 84525427 84525726 -99762936 + AluSg SINE Alu 4 302 -8 3148 161 57 37 chr4 84525726 84526432 -99762230 + L1MB7 LINE L1 5216 5955 -229 1624 133 99 3 chr4 84527508 84527802 -99760860 + MSTB-int LTR MaLR 1330 1651 0 2486 156 9 25 chr4 84527802 84528233 -99760429 + MSTB LTR MaLR 1 424 -2 713 178 0 15 chr4 84528233 84528368 -99760294 - MLT1D LTR MaLR -351 154 22 1746 157 0 7 chr4 84529889 84530176 -99758486 - AluSg SINE Alu 0 310 26 288 410 39 0 chr4 84530533 84530689 -99757973 + MIR SINE MIR 28 189 -73 480 193 35 0 chr4 84530717 84530831 -99757831 + L1ME1 LINE L1 5939 6056 -110 2343 93 0 0 chr4 84530831 84531121 -99757541 - AluSx SINE Alu -17 295 6 645 324 73 34 chr4 84531435 84531793 -99756869 - L3 LINE CR1 -836 741 370 926 165 44 13 chr4 84532546 84532704 -99755958 - FRAM SINE Alu -16 160 1 274 328 96 17 chr4 84533388 84533565 -99755097 + MIR3 SINE MIR 11 201 -7 196 263 86 101 chr4 84534056 84534254 -99754408 + L2 LINE L2 3078 3272 -41 2173 110 0 0 chr4 84535001 84535304 -99753358 + AluSx SINE Alu 1 303 0 689 163 20 7 chr4 84535356 84535503 -99753159 - L1MB8 LINE L1 -3 6175 6027 2363 86 3 0 chr4 84535509 84535813 -99752849 + AluSx SINE Alu 1 305 -7 2096 151 84 0 chr4 84535823 84536228 -99752434 - L1MB2 LINE L1 -18 6153 5715 211 195 0 0 chr4 84536706 84536747 -99751915 + (TCCA)n Simple_repeat Simple_repeat 3 43 0 2160 120 0 7 chr4 84536937 84537245 -99751417 + AluSx SINE Alu 1 306 -6 30 59 0 0 chr4 84537534 84537585 -99751077 + AT_rich Low_complexity Low_complexity 1 51 0 1066 46 0 0 chr4 84537682 84537813 -99750849 + THE1C LTR MaLR 245 375 0 2891 107 133 2 chr4 84537813 84538318 -99750344 + THE1C-int LTR MaLR 1 571 -1009 2688 146 22 6 chr4 84538322 84538814 -99749848 + Tigger3(Golem) DNA MER2_type 2495 2994 -35 183 200 111 0 chr4 84538853 84538898 -99749764 - MIR SINE MIR -128 134 85 1094 187 67 5 chr4 84538898 84539188 -99749474 - MLT1D LTR MaLR 0 505 153 1885 168 90 25 chr4 84539191 84539381 -99749281 + MSTB LTR MaLR 1 177 -249 2019 138 0 10 chr4 84539381 84539677 -99748985 + AluSx SINE Alu 1 293 -19 1885 168 90 25 chr4 84539677 84539886 -99748776 + MSTB LTR MaLR 177 426 0 5592 143 14 90 chr4 84539886 84541122 -99747540 + MSTB-int LTR MaLR 1 1142 -509 2326 113 0 3 chr4 84541559 84541870 -99746792 - AluSg SINE Alu 0 310 1 220 237 34 0 chr4 84542197 84542256 -99746406 + GA-rich Low_complexity Low_complexity 2 62 0 246 44 0 44 chr4 84542309 84542354 -99746308 + L1MA7 LINE L1 6247 6289 -2 542 215 35 7 chr4 84542971 84543115 -99745547 - MER106B DNA MER1_type -6 1053 906 1688 176 97 67 chr4 84543195 84543593 -99745069 - LTR54 LTR ERV1 -2 508 91 1817 161 13 7 chr4 84543593 84543891 -99744771 - AluSx SINE Alu -10 302 3 1688 176 97 67 chr4 84543891 84543985 -99744677 - LTR54 LTR ERV1 -419 91 1 1390 248 59 55 chr4 84543985 84544514 -99744148 - MER57-int LTR ERV1 -393 7144 6614 252 204 0 0 chr4 84544493 84544542 -99744120 - MER57-int LTR ERV1 -641 4230 4182 * 1157 252 29 19 chr4 84544608 84544973 -99743689 - LTR10C LTR ERV1 -26 529 188 393 22 0 0 chr4 84544994 84545040 -99743622 + (TA)n Simple_repeat Simple_repeat 1 46 0 369 0 0 0 chr4 84545039 84545080 -99743582 + (CA)n Simple_repeat Simple_repeat 2 42 0 * 485 158 34 23 chr4 84545109 84545286 -99743376 + (TA)n Simple_repeat Simple_repeat 1 179 0 286 217 0 0 chr4 84545388 84545448 -99743214 - MER57-int LTR ERV1 -697 4174 4115 1151 241 17 17 chr4 84545500 84545794 -99742868 - MER57-int LTR ERV1 -778 4093 3800 5082 200 142 47 chr4 84545802 84546126 -99742536 - MER57-int LTR ERV1 -531 4405 4113 2312 91 7 3 chr4 84546126 84546424 -99742238 - AluSq SINE Alu -14 299 1 5082 200 142 47 chr4 84546424 84546674 -99741988 - MER57-int LTR ERV1 -823 4113 3888 1301 216 49 31 chr4 84546674 84546961 -99741701 - AluJo SINE Alu -19 293 2 5082 200 142 47 chr4 84546961 84548232 -99740430 - MER57-int LTR ERV1 -1048 3888 2404 2209 115 0 28 chr4 84548440 84548761 -99739901 - AluSx SINE Alu 0 312 1 278 229 0 0 chr4 84548895 84548956 -99739706 - MER57-int LTR ERV1 -6919 618 558 993 236 32 71 chr4 84549100 84549455 -99739207 - MER57-int LTR ERV1 -4079 2252 1324 2319 160 61 28 chr4 84549467 84549961 -99738701 - LTR54 LTR ERV1 0 510 1 417 322 89 0 chr4 84550081 84550261 -99738401 - MLT1E-int LTR MaLR -484 887 692 942 238 50 46 chr4 84550388 84550932 -99737730 - MLT1E-int LTR MaLR -709 662 1 1869 260 34 14 chr4 84550941 84551438 -99737224 - MLT1E LTR MaLR -20 573 67 887 233 34 81 chr4 84551465 84551907 -99736755 + MLT1D LTR MaLR 3 423 -82 1316 197 18 32 chr4 84552010 84552294 -99736368 + AluJo SINE Alu 9 288 -24 26 50 0 0 chr4 84552371 84552411 -99736251 + AT_rich Low_complexity Low_complexity 1 40 0 2164 74 0 32 chr4 84552577 84552886 -99735776 - AluY SINE Alu -12 299 1 380 248 105 8 chr4 84552898 84553031 -99735631 - L1M4 LINE L1 -2931 3215 3070 326 240 115 10 chr4 84553038 84553246 -99735416 - L1M4 LINE L1 -3171 2975 2746 183 128 17 60 chr4 84553249 84553366 -99735296 + (TA)n Simple_repeat Simple_repeat 2 113 0 268 222 0 0 chr4 84553711 84553765 -99734897 - L2 LINE L2 -2 3311 3258 198 368 46 0 chr4 84553800 84553887 -99734775 - L2 LINE L2 -234 3079 2989 743 236 73 58 chr4 84553896 84554153 -99734509 + MIR SINE MIR 4 252 -10 267 343 0 0 chr4 84554167 84554237 -99734425 - L2 LINE L2 -309 2963 2894 263 277 93 0 chr4 84554463 84554570 -99734092 + MIR SINE MIR 38 152 -80 516 96 0 0 chr4 84554604 84554687 -99733975 - L1PB1 LINE L1 -1 6150 6068 204 287 81 59 chr4 84556509 84556645 -99732017 - L2 LINE L2 -47 3266 3128 * 773 260 66 4 chr4 84556621 84556863 -99731799 - MIR SINE MIR -1 261 5 321 194 0 30 chr4 84557414 84557481 -99731181 + L2 LINE L2 3208 3272 0 3072 130 60 4 chr4 84557697 84558251 -99730411 + L1MB2 LINE L1 5587 6171 0 2110 125 17 0 chr4 84558884 84559179 -99729483 + AluSx SINE Alu 1 300 -12 198 281 18 18 chr4 84559319 84559376 -99729286 + L2 LINE L2 2997 3053 -219 206 350 33 33 chr4 84559487 84559607 -99729055 + L2 LINE L2 3190 3309 -4 2301 104 0 0 chr4 84560215 84560513 -99728149 + AluSx SINE Alu 1 298 -14 317 279 82 32 chr4 84560886 84561044 -99727618 - L1ME4a LINE L1 -240 5881 5716 8036 145 55 3 chr4 84561500 84563008 -99725654 - L1MCa LINE L1 -4821 1605 20 1333 71 5 22 chr4 84563015 84563199 -99725463 - AluSg/x SINE Alu -9 300 120 208 320 0 39 chr4 84563523 84563601 -99725061 + L2 LINE L2 3239 3313 0 246 369 10 0 chr4 84563675 84563780 -99724882 - MIR SINE MIR -78 130 43 27 0 0 0 chr4 84564122 84564149 -99724513 + AT_rich Low_complexity Low_complexity 1 27 0 1211 233 78 40 chr4 84564501 84564849 -99723813 + MLT1E2 LTR MaLR 264 624 -2 314 320 31 0 chr4 84564851 84564948 -99723714 - MIR SINE MIR -116 146 47 719 205 56 0 chr4 84565372 84565533 -99723129 - MER7C DNA MER2_type -432 170 1 456 248 9 0 chr4 84565533 84565636 -99723026 + Tigger7 DNA MER2_type 2384 2487 0 243 341 61 12 chr4 84566071 84566153 -99722509 - MIR SINE MIR -103 105 20 236 140 53 53 chr4 84566596 84566746 -99721916 + (GTGTG)n Simple_repeat Simple_repeat 1 150 0 * 277 105 47 35 chr4 84566664 84566750 -99721912 + (TGG)n Simple_repeat Simple_repeat 2 88 0 232 286 90 17 chr4 84567061 84567239 -99721423 + HAL1 LINE L1 2244 2434 -73 756 196 0 14 chr4 84567242 84567380 -99721282 - FLAM_C SINE Alu -7 136 1 2095 159 0 0 chr4 84567392 84567694 -99720968 - AluSx SINE Alu -10 302 1 199 357 89 27 chr4 84568040 84568152 -99720510 - MER5B DNA MER1_type -24 154 36 2893 105 5 5 chr4 84568164 84568601 -99720061 - L1PA14 LINE L1 0 6161 5725 862 72 32 0 chr4 84568703 84568828 -99719834 - AluY SINE Alu -26 285 157 431 118 47 30 chr4 84570617 84570786 -99717876 + G-rich Low_complexity Low_complexity 2 173 0 42607 36 1 1 chr4 84570959 84576969 -99711693 - L1PA3 LINE L1 -149 6006 3 277 233 0 0 chr4 84577494 84577554 -99711108 - MLT1J2 LTR MaLR -44 406 347 1003 244 21 12 chr4 84578025 84578267 -99710395 + MIR SINE MIR 19 262 0 1455 183 138 26 chr4 84579045 84579422 -99709240 + MSTB LTR MaLR 4 422 -4 1023 290 46 30 chr4 84579515 84579908 -99708754 - L2 LINE L2 0 3313 2915 277 315 120 0 chr4 84580087 84580195 -99708467 - L2 LINE L2 -177 3136 3016 1104 172 110 0 chr4 84580267 84580476 -99708186 - MSTC LTR MaLR 0 428 197 1360 203 82 25 chr4 84580487 84580851 -99707811 - MSTB1 LTR MaLR -47 385 1 235 242 15 15 chr4 84581067 84581133 -99707529 + L2 LINE L2 2527 2592 -722 917 304 120 10 chr4 84581839 84582490 -99706172 - L2 LINE L2 -178 3135 2393 661 100 0 0 chr4 84582503 84582593 -99706069 - AluSg/x SINE Alu -7 303 214 394 273 14 36 chr4 84582635 84582774 -99705888 - L2 LINE L2 -991 2323 2188 326 290 30 10 chr4 84582838 84582938 -99705724 - L2 LINE L2 0 3272 3171 900 172 2 5 chr4 84582951 84583363 -99705299 + CT-rich Low_complexity Low_complexity 1 411 0 1121 177 36 18 chr4 84583394 84583664 -99704998 - AluJo SINE Alu 0 360 87 1483 204 138 2 chr4 84583810 84583840 -99704822 - MLT2B3 LTR ERVL -8 507 482 390 42 0 0 chr4 84583840 84583888 -99704774 + (TG)n Simple_repeat Simple_repeat 2 49 0 1483 204 138 2 chr4 84583888 84584298 -99704364 - MLT2B3 LTR ERVL -33 482 3 1729 315 126 31 chr4 84584312 84585252 -99703410 - L2 LINE L2 -1282 2032 1004 498 253 82 92 chr4 84585308 84585445 -99703217 - L2 LINE L2 0 3313 3176 2467 74 0 0 chr4 84585445 84585741 -99702921 + AluSc SINE Alu 1 296 -13 498 253 82 92 chr4 84585741 84585982 -99702680 - L2 LINE L2 -137 3176 2939 2806 151 8 30 chr4 84586469 84586608 -99702054 - L1MB7 LINE L1 -19 6165 6024 2382 91 0 0 chr4 84586608 84586906 -99701756 + AluSc SINE Alu 1 298 -11 2806 151 8 30 chr4 84586906 84587301 -99701361 - L1MB7 LINE L1 -160 6024 5643 449 288 86 7 chr4 84588445 84588584 -99700078 + MIR3 SINE MIR 58 207 -1 434 301 37 25 chr4 84588683 84588846 -99699816 + MIR SINE MIR 81 245 -17 2168 109 0 0 chr4 84590066 84590388 -99698274 - AluSx SINE Alu 0 322 1 2300 98 18 9 chr4 84590654 84590991 -99697671 + L1PA14 LINE L1 5822 6161 0 921 136 0 32 chr4 84591039 84591194 -99697468 + AluSq SINE Alu 83 232 -81 285 75 0 0 chr4 84591220 84591260 -99697402 + (CATA)n Simple_repeat Simple_repeat 1 40 0 20837 154 24 18 chr4 84591599 84596698 -99691964 - L1PA11 LINE L1 -1 6173 1054 225 94 0 0 chr4 84596875 84596907 -99691755 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 4245 92 21 57 chr4 84596909 84597298 -99691364 - L1PB1 LINE L1 -8 6143 5789 249 83 0 0 chr4 84597298 84597334 -99691328 + (CA)n Simple_repeat Simple_repeat 2 37 0 4245 92 21 57 chr4 84597334 84597648 -99691014 - L1PB1 LINE L1 -362 5789 5465 7767 20 0 0 chr4 84599958 84601025 -99687637 - L1PA3 LINE L1 0 6155 5089 226 209 0 0 chr4 84601192 84601235 -99687427 + (TAG)n Simple_repeat Simple_repeat 1 43 0 2110 131 7 0 chr4 84601570 84601867 -99686795 + AluSx SINE Alu 1 299 -13 404 270 176 82 chr4 84602102 84602443 -99686219 - L1MC/D LINE L1 -535 5631 5374 1232 45 6 56 chr4 84602544 84602723 -99685939 - AluY SINE Alu -6 305 136 408 88 0 0 chr4 84602723 84602780 -99685882 + (TTTA)n Simple_repeat Simple_repeat 3 59 0 2344 61 4 0 chr4 84602780 84603060 -99685602 - AluY SINE Alu -30 281 1 546 232 12 15 chr4 84603094 84603254 -99685408 + MLT1I LTR MaLR 278 409 0 307 262 110 30 chr4 84603355 84603519 -99685143 - L1MC/D LINE L1 -826 5320 5144 359 278 21 21 chr4 84603620 84603764 -99684898 - L1MC/D LINE L1 -1979 4167 4024 190 241 0 56 chr4 84603787 84603841 -99684821 + L2 LINE L2 3263 3313 0 2592 53 0 0 chr4 84603924 84604227 -99684435 + AluY SINE Alu 1 303 -8 1642 172 14 7 chr4 84604227 84604505 -99684157 - AluJo SINE Alu -31 281 1 671 262 94 72 chr4 84604555 84604953 -99683709 - L1MC/D LINE L1 -2111 4035 3647 1790 182 13 3 chr4 84604953 84605261 -99683401 - AluJb SINE Alu -1 311 1 671 262 94 72 chr4 84605261 84605763 -99682899 - L1MC/D LINE L1 -2499 3647 3115 202 253 126 32 chr4 84606189 84606284 -99682378 - L2 LINE L2 -50 3222 3119 299 311 148 49 chr4 84606470 84606875 -99681787 - MLT1J2 LTR MaLR -5 445 1 2364 67 0 35 chr4 84607444 84607758 -99680904 - AluY SINE Alu -8 303 1 590 103 21 21 chr4 84608571 84608668 -99679994 + AluS SINE Alu 3 99 -213 3840 178 14 0 chr4 84608822 84609579 -99679083 - L1P LINE L1 -977 5169 4402 24 0 0 0 chr4 84609607 84609631 -99679031 + AT_rich Low_complexity Low_complexity 1 24 0 220 229 203 17 chr4 84611327 84611445 -99677217 + MIR SINE MIR 5 144 -118 1101 200 16 0 chr4 84611809 84611994 -99676668 - AluJo SINE Alu -40 272 85 22 35 0 0 chr4 84612020 84612049 -99676613 + AT_rich Low_complexity Low_complexity 1 29 0 1112 278 92 5 chr4 84613357 84613757 -99674905 + L1M2 LINE L1 11 445 -6404 423 345 75 35 chr4 84613791 84613965 -99674697 + L1M2 LINE L1 587 767 -6082 3333 236 16 8 chr4 84614131 84614959 -99673703 + L1M2 LINE L1 1070 1903 -4946 1326 193 0 5 chr4 84614961 84615184 -99673478 + AluJo SINE Alu 5 226 -86 276 227 268 0 chr4 84616211 84616308 -99672354 - HAL1 LINE L1 -2381 126 4 2549 153 66 27 chr4 84616404 84616966 -99671696 - L1MB7 LINE L1 -8 6176 5593 23905 42 3 4 chr4 84617846 84621028 -99667634 + L1P LINE L1 1445 4621 -1525 195 262 0 0 chr4 84621398 84621440 -99667222 - MIR SINE MIR -171 91 50 1512 112 141 22 chr4 84622003 84622272 -99666390 + AluSg1 SINE Alu 1 301 -8 28 48 0 0 chr4 84622561 84622603 -99666059 + AT_rich Low_complexity Low_complexity 1 42 0 1066 46 0 0 chr4 84622709 84622840 -99665822 + THE1C LTR MaLR 245 375 0 2129 131 31 8 chr4 84622840 84623354 -99665308 + THE1C-int LTR MaLR 1 587 -993 302 144 93 0 chr4 84623372 84623469 -99665193 + Tigger3(Golem) DNA MER2_type 2525 2630 -399 1177 80 0 0 chr4 84623861 84624060 -99664602 + AluY SINE Alu 132 330 0 1229 40 6 57 chr4 84624060 84624236 -99664426 + AluY SINE Alu 136 302 -9 404 273 176 82 chr4 84624337 84624678 -99663984 + L1ME LINE L1 5374 5631 -535 2108 130 0 3 chr4 84624913 84625213 -99663449 - AluSx SINE Alu -13 299 1 253 286 75 30 chr4 84625213 84625412 -99663250 - HAL1b LINE L1 -849 499 292 1512 192 10 0 chr4 84625849 84626161 -99662501 - L1MB4 LINE L1 0 6180 5866 286 237 26 0 chr4 84626934 84627010 -99661652 + MER116 DNA Mariner 3 80 0 2364 65 0 0 chr4 84627434 84627726 -99660936 + AluY SINE Alu 1 292 -19 349 293 138 31 chr4 84627907 84628327 -99660335 + L1ME LINE L1 5255 5719 -402 224 229 24 84 chr4 84628332 84628415 -99660247 - MIR SINE MIR -178 84 7 * 1034 210 49 16 chr4 84628344 84628587 -99660075 + MIR SINE MIR 12 262 0 593 288 53 43 chr4 84630093 84630374 -99658288 + LTR16A LTR ERVL 161 444 -6 425 248 32 0 chr4 84630521 84630646 -99658016 + L1MC4a LINE L1 5308 5436 -2372 4050 204 39 7 chr4 84630647 84631828 -99656834 + L1MB8 LINE L1 4338 5551 -633 3093 167 16 28 chr4 84631991 84632633 -99656029 + L1MB8 LINE L1 5543 6176 -2 807 311 122 5 chr4 84632639 84633067 -99655595 + L1MC4a LINE L1 5425 5902 -1906 441 275 115 92 chr4 84633127 84633287 -99655375 + L1MC4a LINE L1 5951 6106 -1702 2273 111 0 0 chr4 84633287 84633584 -99655078 - AluSx SINE Alu -15 297 1 441 275 115 92 chr4 84633584 84633728 -99654934 + L1MC4a LINE L1 6106 6262 -1546 823 289 180 18 chr4 84634038 84634660 -99654002 + L1MC4 LINE L1 6764 7486 -556 2241 32 58 0 chr4 84634664 84634941 -99653721 + AluY SINE Alu 6 298 -13 830 104 97 0 chr4 84635100 84635234 -99653428 + L1PA10 LINE L1 6017 6163 -5 418 299 97 23 chr4 84635336 84635644 -99653018 + L1MC4 LINE L1 7595 7925 -117 354 290 84 42 chr4 84635692 84635954 -99652708 + L1M4 LINE L1 3045 3317 -2829 1433 91 10 0 chr4 84636031 84636228 -99652434 + AluSx SINE Alu 21 219 -93 761 218 144 5 chr4 84636377 84636579 -99652083 - LTR1 LTR ERV1 -555 230 1 428 269 41 41 chr4 84636579 84636606 -99652056 - MIR SINE MIR -113 149 123 1819 239 90 8 chr4 84636606 84637130 -99651532 + MLT1F1 LTR MaLR 1 567 0 428 269 41 41 chr4 84637130 84637247 -99651415 - MIR SINE MIR -138 124 5 21 0 0 0 chr4 84637630 84637651 -99651011 + AT_rich Low_complexity Low_complexity 1 21 0 1501 202 56 21 chr4 84637657 84638034 -99650628 + MLT1B LTR MaLR 1 390 0 334 296 179 31 chr4 84638036 84638259 -99650403 + MIR SINE MIR 2 257 -5 2381 159 6 65 chr4 84638619 84638906 -99649756 + LTR24 LTR ERV1 1 248 -219 3579 168 35 22 chr4 84638906 84639616 -99649046 - LTR62 LTR ERVK 0 719 1 2381 159 6 65 chr4 84639616 84639824 -99648838 + LTR24 LTR ERV1 248 467 0 2253 108 3 0 chr4 84640311 84640608 -99648054 - AluSx SINE Alu -14 298 1 792 114 13 44 chr4 84640696 84640854 -99647808 + L1MB4 LINE L1 6028 6180 0 32 0 0 0 chr4 84641018 84641050 -99647612 + AT_rich Low_complexity Low_complexity 1 32 0 276 89 25 51 chr4 84642728 84642807 -99645855 + (TA)n Simple_repeat Simple_repeat 1 77 0 1838 133 3 0 chr4 84642958 84643242 -99645420 + Tigger3(Golem) DNA MER2_type 1 285 -2744 3782 186 73 16 chr4 84643242 84643571 -99645091 + MER6 DNA MER2_type 1 310 -555 222 37 0 0 chr4 84643571 84643598 -99645064 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 3782 186 73 16 chr4 84643598 84643970 -99644692 + MER6 DNA MER2_type 310 758 -107 6366 120 42 17 chr4 84643970 84645015 -99643647 + MER11C LTR ERVK 1 1071 0 3782 186 73 16 chr4 84645015 84645129 -99643533 + MER6 DNA MER2_type 758 864 -1 248 82 61 0 chr4 84645129 84645173 -99643489 + Tigger3(Golem) DNA MER2_type 283 329 -2700 246 197 15 45 chr4 84645315 84645447 -99643215 + (CATATA)n Simple_repeat Simple_repeat 2 129 0 4480 145 29 37 chr4 84645453 84646091 -99642571 + Tigger3b DNA MER2_type 341 972 -2056 1856 173 7 0 chr4 84646091 84646397 -99642265 - AluJb SINE Alu -4 308 1 4480 145 29 37 chr4 84646397 84646656 -99642006 + Tigger3b DNA MER2_type 972 1231 0 22 56 0 0 chr4 84646920 84646956 -99641706 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr4 84647420 84647444 -99641218 + AT_rich Low_complexity Low_complexity 1 24 0 574 115 67 10 chr4 84647566 84647670 -99640992 + MLT1B LTR MaLR 1 110 -280 1360 199 41 57 chr4 84647973 84648381 -99640281 - L1M3 LINE L1 -606 5577 5182 1790 167 10 13 chr4 84648381 84648562 -99640100 - AluJo SINE Alu -7 305 124 216 0 0 0 chr4 84648562 84648586 -99640076 + (ATTG)n Simple_repeat Simple_repeat 1 24 0 1790 167 10 13 chr4 84648586 84648710 -99639952 - AluJo SINE Alu -188 124 1 1360 199 41 57 chr4 84648710 84648797 -99639865 - L1M3 LINE L1 -1001 5182 5095 2206 114 3 0 chr4 84650565 84650862 -99637800 - AluSx SINE Alu -14 298 1 848 86 86 0 chr4 84650975 84651103 -99637559 - MER85 DNA T2_type 0 139 1 1820 103 34 0 chr4 84651124 84651415 -99637247 - L1MA4A LINE L1 -6 6297 5997 1823 129 80 17 chr4 84651436 84651782 -99636880 - MLT2A2 LTR ERVL -149 304 1 1169 130 50 80 chr4 84652523 84652761 -99635901 - AluJo SINE Alu -5 307 77 585 128 0 0 chr4 84652803 84652889 -99635773 - AluJo SINE Alu -226 86 1 1138 201 34 0 chr4 84652898 84653162 -99635500 - L1MC2 LINE L1 -2 6342 6070 267 228 105 20 chr4 84653187 84653342 -99635320 - L1MC4 LINE L1 -308 7687 7508 556 244 50 113 chr4 84653427 84654091 -99634571 - L1MC4 LINE L1 -568 7474 6853 181 307 0 91 chr4 84654402 84654490 -99634172 + MIR SINE MIR 6 85 -177 1496 186 175 8 chr4 84654490 84654855 -99633807 - MSTB LTR MaLR 0 426 1 8448 173 26 18 chr4 84654855 84656486 -99632176 - MSTA-int LTR MaLR 0 1651 7 1760 149 135 6 chr4 84656589 84656938 -99631724 - MSTA LTR MaLR -34 394 1 208 195 49 0 chr4 84656981 84657022 -99631640 + polypyrimidine Low_complexity Low_complexity 2 44 0 197 86 57 0 chr4 84657022 84657057 -99631605 + T-rich Low_complexity Low_complexity 2 38 0 223 329 26 71 chr4 84657066 84657146 -99631516 + MIR SINE MIR 114 185 -77 4823 131 23 6 chr4 84657146 84657610 -99631052 - L1PA16 LINE L1 0 6166 5712 2241 105 7 0 chr4 84657610 84657905 -99630757 - AluSx SINE Alu -15 297 1 4823 131 23 6 chr4 84657905 84658691 -99629971 - L1PA16 LINE L1 -454 5712 4873 223 329 26 71 chr4 84658691 84658765 -99629897 + MIR SINE MIR 185 261 -1 467 300 69 49 chr4 84659011 84659258 -99629404 + MIR SINE MIR 11 262 0 216 0 0 0 chr4 84659346 84659370 -99629292 + (GA)n Simple_repeat Simple_repeat 2 25 0 194 388 150 7 chr4 84659931 84660078 -99628584 + MIR3 SINE MIR 40 207 -1 2257 59 0 81 chr4 84660249 84660571 -99628091 - AluY SINE Alu -15 296 1 924 249 75 0 chr4 84660911 84661152 -99627510 - MIR SINE MIR -1 261 3 23 33 0 0 chr4 84661166 84661196 -99627466 + AT_rich Low_complexity Low_complexity 1 30 0 251 281 106 12 chr4 84661799 84661959 -99626703 + MIR SINE MIR 67 241 -21 25 0 0 0 chr4 84662205 84662230 -99626432 + AT_rich Low_complexity Low_complexity 1 25 0 1037 201 20 0 chr4 84663433 84663637 -99625025 + MLT1D LTR MaLR 298 505 0 340 308 128 19 chr4 84663637 84663899 -99624763 - L1MC/D LINE L1 -743 5403 5174 354 189 32 32 chr4 84663919 84664014 -99624648 - L1MC5 LINE L1 -34 7927 7833 27 62 0 0 chr4 84664145 84664193 -99624469 + AT_rich Low_complexity Low_complexity 1 48 0 226 59 0 0 chr4 84665836 84665870 -99622792 + L1MA4A LINE L1 6250 6283 -20 34 42 0 0 chr4 84665884 84665932 -99622730 + AT_rich Low_complexity Low_complexity 1 48 0 2582 122 60 0 chr4 84666066 84666468 -99622194 + MSTB LTR MaLR 1 426 0 1384 298 72 18 chr4 84668304 84669005 -99619657 - L2 LINE L2 -16 3297 2553 355 377 48 13 chr4 84669050 84669360 -99619302 - L2 LINE L2 -2363 951 631 521 286 92 62 chr4 84669549 84669906 -99618756 - MARNA DNA Mariner -131 455 88 302 286 67 8 chr4 84670166 84670285 -99618377 - L2 LINE L2 -18 3295 3170 472 272 124 18 chr4 84670322 84670491 -99618171 - MIR SINE MIR -29 233 47 1287 279 83 14 chr4 84671061 84671481 -99617181 + L1M2 LINE L1 11 459 -6390 427 358 72 31 chr4 84671496 84671689 -99616973 + L1M2 LINE L1 587 787 -6062 7905 214 34 13 chr4 84671837 84672668 -99615994 + L1M2 LINE L1 1070 1881 -4967 1809 183 0 3 chr4 84672668 84672963 -99615699 + AluJo SINE Alu 5 298 -14 7905 214 34 13 chr4 84672963 84675235 -99613427 + L1M2 LINE L1 1881 4241 -2607 1458 227 34 22 chr4 84675212 84675626 -99613036 + L1M2 LINE L1 4816 5234 -1614 * 428 137 27 0 chr4 84675629 84675702 -99612960 + L1PB4 LINE L1 5706 5780 -376 452 143 12 0 chr4 84675741 84675825 -99612837 + L1PB4 LINE L1 6069 6153 -3 183 194 0 0 chr4 84676294 84676325 -99612337 + L2 LINE L2 3224 3254 -18 629 297 82 30 chr4 84676432 84676735 -99611927 + LTR16C LTR ERVL 154 472 -19 15213 136 91 21 chr4 84677096 84680674 -99607988 - L1PBa LINE L1 -2999 3863 35 25 0 0 0 chr4 84680718 84680743 -99607919 + AT_rich Low_complexity Low_complexity 1 25 0 183 308 90 0 chr4 84680755 84680833 -99607829 - MIR SINE MIR -18 244 160 903 291 21 55 chr4 84680838 84681257 -99607405 - MLT1I LTR MaLR -4 405 1 197 356 27 0 chr4 84681276 84681349 -99607313 - MIR SINE MIR -122 140 66 256 267 22 56 chr4 84681427 84681517 -99607145 + MIR SINE MIR 152 238 -24 2591 39 7 7 chr4 84682450 84682760 -99605902 - AluY SINE Alu -1 310 1 310 336 68 57 chr4 84683337 84683617 -99605045 - L1ME LINE L1 -356 5765 5483 24 0 0 0 chr4 84683822 84683846 -99604816 + AT_rich Low_complexity Low_complexity 1 24 0 2468 65 0 0 chr4 84683878 84684170 -99604492 + AluY SINE Alu 3 294 -17 39543 72 8 7 chr4 84684462 84690601 -99598061 - L1PA6 LINE L1 0 6154 12 21 0 0 0 chr4 84690802 84690823 -99597839 + AT_rich Low_complexity Low_complexity 1 21 0 245 350 150 36 chr4 84690996 84691382 -99597280 - L2 LINE L2 -30 3283 2854 450 324 27 23 chr4 84691440 84691703 -99596959 - L2 LINE L2 -550 2764 2413 209 255 245 32 chr4 84691693 84691787 -99596875 + MIR SINE MIR 34 147 -115 * 318 264 36 45 chr4 84691774 84691884 -99596778 - L2 LINE L2 -998 2316 2208 181 309 82 31 chr4 84692249 84692346 -99596316 - L2 LINE L2 -650 2664 2563 324 279 70 74 chr4 84692970 84693118 -99595544 - L1MB8 LINE L1 -215 5963 5815 2832 205 29 23 chr4 84693118 84693767 -99594895 - MER82 DNA MER2_type 0 653 1 324 279 70 74 chr4 84693767 84693862 -99594800 - L1MB8 LINE L1 -363 5815 5721 1831 105 60 76 chr4 84694289 84694422 -99594240 + AluSx SINE Alu 2 136 -176 1976 118 3 7 chr4 84694422 84694709 -99593953 + AluSg SINE Alu 1 286 -24 1831 105 60 76 chr4 84694709 84694890 -99593772 + AluSx SINE Alu 136 311 -1 1114 216 14 5 chr4 84694938 84695156 -99593506 + MER58A DNA MER1_type 4 223 -1 2266 88 3 3 chr4 84696062 84696358 -99592304 + AluSc SINE Alu 1 296 -13 2959 252 83 5 chr4 84696974 84697759 -99590903 - MER21B LTR ERV1 -3 860 15 361 292 96 22 chr4 84698567 84698745 -99589917 + L2 LINE L2 3120 3310 -3 735 283 35 19 chr4 84698763 84699021 -99589641 + MIR SINE MIR 1 262 0 198 375 0 0 chr4 84699118 84699174 -99589488 + L2 LINE L2 3209 3264 -8 27 29 0 0 chr4 84699257 84699291 -99589371 + AT_rich Low_complexity Low_complexity 1 34 0 2078 102 0 0 chr4 84699368 84699633 -99589029 - AluSx SINE Alu -11 301 37 412 304 82 15 chr4 84699636 84699771 -99588891 - MIR SINE MIR -71 191 48 188 314 57 0 chr4 84700815 84700885 -99587777 - L2 LINE L2 -16 3297 3224 1803 251 82 77 chr4 84700973 84701858 -99586804 + L2 LINE L2 1109 1998 -1316 2538 146 47 6 chr4 84701858 84702330 -99586332 - L1MB7 LINE L1 -9 6175 5685 358 328 8 15 chr4 84702876 84703007 -99585655 - L2 LINE L2 -2 3311 3182 2221 112 0 3 chr4 84703118 84703422 -99585240 - AluSx SINE Alu -9 303 1 1689 175 0 14 chr4 84704509 84704795 -99583867 - AluJo SINE Alu -28 284 3 21 0 0 0 chr4 84704940 84704961 -99583701 + AT_rich Low_complexity Low_complexity 1 21 0 289 301 66 14 chr4 84705488 84705701 -99582961 - L1ME LINE L1 -262 5859 5636 827 243 85 4 chr4 84705864 84706099 -99582563 + MIR SINE MIR 5 258 -4 1860 145 86 44 chr4 84706810 84707345 -99581317 - MLT2A2 LTR ERVL 0 554 1 914 103 76 22 chr4 84707595 84707779 -99580883 + L1MA8 LINE L1 6095 6288 -3 23 0 0 0 chr4 84707821 84707844 -99580818 + AT_rich Low_complexity Low_complexity 1 23 0 2079 120 0 10 chr4 84708535 84708834 -99579828 + AluSx SINE Alu 3 298 -14 187 339 0 0 chr4 84708937 84708993 -99579669 - L2 LINE L2 -305 2967 2912 2201 112 0 7 chr4 84710427 84710722 -99577940 - AluSx SINE Alu -19 293 1 27 87 0 0 chr4 84710812 84710881 -99577781 + AT_rich Low_complexity Low_complexity 1 69 0 191 317 0 0 chr4 84711110 84711170 -99577492 - L2 LINE L2 -463 2851 2792 582 334 106 28 chr4 84711193 84711627 -99577035 - L2 LINE L2 -1 3312 2845 198 279 0 0 chr4 84711840 84711883 -99576779 - L2 LINE L2 -9 3263 3221 182 337 76 87 chr4 84712008 84712388 -99576274 - L2 LINE L2 -337 2977 2602 2220 64 0 60 chr4 84713028 84713342 -99575320 - AluY SINE Alu -16 295 1 794 230 0 57 chr4 84713580 84713789 -99574873 - AluJb SINE Alu -6 306 110 23 0 0 0 chr4 84713968 84713991 -99574671 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr4 84714125 84714150 -99574512 + AT_rich Low_complexity Low_complexity 1 25 0 308 255 53 0 chr4 84714234 84714328 -99574334 + L1MB7 LINE L1 6076 6174 -10 198 224 103 60 chr4 84715618 84715734 -99572928 + L2 LINE L2 2265 2385 -929 426 298 10 8 chr4 84717943 84718124 -99570538 - MIR SINE MIR -1 261 28 237 324 122 56 chr4 84718177 84719029 -99569633 - L2 LINE L2 -1240 2074 1167 22 0 0 0 chr4 84719139 84719161 -99569501 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 84719622 84719647 -99569015 + AT_rich Low_complexity Low_complexity 1 25 0 2180 97 3 24 chr4 84719956 84720254 -99568408 + AluSx SINE Alu 2 293 -19 278 322 75 12 chr4 84720301 84720432 -99568230 + MIR SINE MIR 16 153 -66 2209 91 0 0 chr4 84720477 84720762 -99567900 + AluSx SINE Alu 15 299 -13 24 0 0 0 chr4 84721453 84721477 -99567185 + AT_rich Low_complexity Low_complexity 1 24 0 195 42 0 0 chr4 84721796 84721820 -99566842 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 343 134 10 52 chr4 84722054 84722151 -99566511 + GA-rich Low_complexity Low_complexity 2 94 0 21 36 0 0 chr4 84723370 84723398 -99565264 + AT_rich Low_complexity Low_complexity 1 28 0 381 243 92 70 chr4 84724624 84724809 -99563853 - MER5A DNA MER1_type 0 189 1 183 328 45 0 chr4 84725069 84725136 -99563526 - L2 LINE L2 -86 3186 3117 1798 132 3 65 chr4 84727173 84727483 -99561179 + AluSx SINE Alu 6 296 -16 2258 115 0 0 chr4 84727894 84728190 -99560472 - AluSx SINE Alu -16 296 1 508 93 163 0 chr4 84728200 84728286 -99560376 - L1MB8 LINE L1 0 6178 6079 1396 148 0 0 chr4 84728315 84728544 -99560118 - L1MB8 LINE L1 -264 5920 5692 316 338 21 13 chr4 84728560 84728696 -99559966 - MIR3 SINE MIR 0 208 74 237 167 0 0 chr4 84728979 84729015 -99559647 + L2 LINE L2 3229 3264 -8 1638 173 18 11 chr4 84730328 84730606 -99558056 + AluJo SINE Alu 1 280 -32 188 35 35 0 chr4 84731058 84731087 -99557575 + (TC)n Simple_repeat Simple_repeat 1 30 0 618 294 40 32 chr4 84731197 84731445 -99557217 + MIR SINE MIR 9 258 -4 519 331 108 42 chr4 84732650 84732982 -99555680 - L2 LINE L2 -5 3267 2914 2005 199 13 15 chr4 84733247 84733644 -99555018 - MSTD LTR MaLR 0 396 1 339 263 211 6 chr4 84734625 84734781 -99553881 - MER112 DNA MER1_type 0 260 73 1037 214 144 25 chr4 84735044 84735329 -99553333 - MLT1C LTR MaLR -148 319 1 304 209 154 0 chr4 84739290 84739381 -99549281 + Charlie7 DNA MER1_type 3 107 -2505 21 0 0 0 chr4 84739624 84739645 -99549017 + AT_rich Low_complexity Low_complexity 1 21 0 1869 163 3 7 chr4 84739645 84739940 -99548722 + AluJo SINE Alu 1 294 -18 199 0 0 61 chr4 84741327 84741360 -99547302 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2223 76 4 0 chr4 84741362 84741638 -99547024 - AluSg1 SINE Alu -32 277 1 2423 99 0 0 chr4 84744898 84745210 -99543452 - AluSx SINE Alu 0 312 1 3557 128 16 26 chr4 84745278 84745830 -99542832 - L1MB3 LINE L1 -1 6182 5635 2140 106 3 10 chr4 84745830 84746132 -99542530 + AluSc SINE Alu 1 300 -9 3557 128 16 26 chr4 84746132 84746187 -99542475 - L1MB3 LINE L1 -548 5635 5581 393 194 65 28 chr4 84746287 84746395 -99542267 - L1MB3 LINE L1 -613 5558 5447 25 0 0 0 chr4 84746577 84746602 -99542060 + AT_rich Low_complexity Low_complexity 1 25 0 1551 192 31 17 chr4 84748126 84748417 -99540245 + AluJo SINE Alu 1 295 -17 241 200 20 0 chr4 84748704 84748754 -99539908 + MADE1 DNA Mariner 1 51 -29 326 292 93 76 chr4 84749638 84749929 -99538733 + L1M4 LINE L1 3148 3443 -2703 290 227 289 0 chr4 84750029 84750126 -99538536 + MIR SINE MIR 22 146 -116 272 325 51 57 chr4 84751985 84752142 -99536520 - MIR3 SINE MIR -21 187 32 411 231 179 58 chr4 84752574 84752730 -99535932 + MER5A DNA MER1_type 14 188 -1 897 259 41 21 chr4 84753343 84753586 -99535076 + MIR SINE MIR 7 254 -8 233 341 106 8 chr4 84755474 84755597 -99533065 - L2 LINE L2 -1 3271 3137 812 287 212 11 chr4 84755759 84756132 -99532530 + L2 LINE L2 2860 3307 -6 23 0 0 0 chr4 84756763 84756786 -99531876 + AT_rich Low_complexity Low_complexity 1 23 0 269 169 0 34 chr4 84760867 84760926 -99527736 + L1MC5 LINE L1 7851 7907 -54 1807 168 43 21 chr4 84761687 84762062 -99526600 - MLT1B LTR MaLR -4 386 4 2081 107 48 0 chr4 84762108 84762399 -99526263 + AluSg SINE Alu 1 305 -5 1405 138 37 19 chr4 84762441 84762709 -99525953 + L1MA2 LINE L1 6032 6304 0 524 95 11 53 chr4 84762615 84762710 -99525952 + L1MA3 LINE L1 6215 6305 0 21 36 0 0 chr4 84762767 84762795 -99525867 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr4 84762978 84763008 -99525654 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr4 84763663 84763691 -99524971 + AT_rich Low_complexity Low_complexity 1 28 0 1669 55 9 0 chr4 84763691 84763909 -99524753 - L1PA3 LINE L1 -3 6152 5933 33 0 0 0 chr4 84763976 84764009 -99524653 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr4 84765678 84765700 -99522962 + AT_rich Low_complexity Low_complexity 1 22 0 258 215 185 0 chr4 84766165 84766230 -99522432 + MIR3 SINE MIR 126 202 -6 2665 257 85 82 chr4 84766472 84767947 -99520715 - L2 LINE L2 -35 3278 1796 2046 114 7 0 chr4 84768691 84768999 -99519663 - AluSq SINE Alu 0 310 1 261 349 10 5 chr4 84769008 84769203 -99519459 + L1ME LINE L1 5659 5854 -267 624 188 119 12 chr4 84769203 84769363 -99519299 - MIR SINE MIR -30 232 56 26 30 0 0 chr4 84769573 84769606 -99519056 + AT_rich Low_complexity Low_complexity 1 33 0 244 358 138 0 chr4 84769686 84769795 -99518867 + MIR SINE MIR 20 143 -119 1581 181 7 17 chr4 84769974 84770266 -99518396 - AluJo SINE Alu -21 291 3 210 91 0 0 chr4 84770316 84770349 -99518313 + (CCCCAA)n Simple_repeat Simple_repeat 3 35 0 225 353 166 30 chr4 84770469 84771066 -99517596 + L2 LINE L2 1989 2666 -648 1143 272 102 16 chr4 84771280 84771787 -99516875 - L2 LINE L2 -34 3279 2721 1527 106 35 35 chr4 84771902 84772128 -99516534 - AluSq SINE Alu -87 226 1 2227 156 27 0 chr4 84772130 84772502 -99516160 + Tigger7 DNA MER2_type 100 481 -2006 1214 234 25 38 chr4 84772508 84772824 -99515838 - AluJo SINE Alu 0 312 1 1183 112 0 5 chr4 84772825 84773012 -99515650 + Tigger7 DNA MER2_type 2402 2587 0 2073 120 11 17 chr4 84773230 84773581 -99515081 + THE1C LTR MaLR 1 349 -26 36 62 0 0 chr4 84774042 84774106 -99514556 + AT_rich Low_complexity Low_complexity 1 64 0 610 257 103 73 chr4 84774288 84774487 -99514175 - L1MC4a LINE L1 -1907 5901 5684 2851 10 0 0 chr4 84774487 84774796 -99513866 + AluYb8 SINE Alu 1 309 -9 610 257 103 73 chr4 84774796 84774966 -99513696 - L1MC4a LINE L1 -2124 5684 5521 311 302 30 65 chr4 84775083 84775252 -99513410 + MER5B DNA MER1_type 1 163 -15 270 250 0 92 chr4 84775387 84775463 -99513199 - L2 LINE L2 -10 3262 3194 1732 253 63 25 chr4 84776913 84777483 -99511179 - MLT1E LTR MaLR -1 592 1 224 336 90 57 chr4 84777663 84777785 -99510877 + L2 LINE L2 3146 3271 -1 26 30 0 0 chr4 84777793 84777826 -99510836 + AT_rich Low_complexity Low_complexity 1 33 0 700 209 32 0 chr4 84778576 84778734 -99509928 - MER69A DNA AcHobo 0 177 15 194 250 0 0 chr4 84778780 84778820 -99509842 + L2 LINE L2 3027 3066 -206 747 165 8 8 chr4 84779624 84779757 -99508905 + FLAM_C SINE Alu 1 133 0 28 29 0 0 chr4 84779802 84779837 -99508825 + AT_rich Low_complexity Low_complexity 1 35 0 2343 112 0 0 chr4 84780259 84780562 -99508100 - AluSq SINE Alu -10 303 1 1120 151 5 29 chr4 84781548 84781754 -99506908 - MLT1B LTR MaLR 0 390 190 2861 244 92 71 chr4 84781882 84782701 -99505961 - MLT1E-int LTR MaLR -13 1722 867 1354 38 0 0 chr4 84782701 84782861 -99505801 - L1PA3 LINE L1 -3 6152 5993 2861 244 92 71 chr4 84782861 84783278 -99505384 - MLT1E-int LTR MaLR -868 867 460 406 108 204 0 chr4 84783301 84783394 -99505268 + LTR48 LTR ERV1 253 364 -423 1315 183 0 4 chr4 84783417 84783658 -99505004 - MLT1E-int LTR MaLR -1252 483 244 357 102 0 0 chr4 84784653 84784712 -99503950 + (CA)n Simple_repeat Simple_repeat 1 59 0 3339 159 114 18 chr4 84784823 84785541 -99503121 + LTR48 LTR ERV1 1 787 0 10421 98 4 0 chr4 84788274 84790546 -99498116 - L1PA8A LINE L1 -85 6046 3765 2143 172 9 0 chr4 84790647 84791066 -99497596 + L1MB4 LINE L1 5758 6180 0 452 281 70 53 chr4 84791502 84791701 -99496961 + HAL1b LINE L1 292 501 -847 2469 99 0 0 chr4 84791701 84792014 -99496648 + AluSp SINE Alu 1 313 0 452 281 70 53 chr4 84792014 84792155 -99496507 + HAL1b LINE L1 501 638 -710 24 0 0 0 chr4 84792189 84792213 -99496449 + AT_rich Low_complexity Low_complexity 1 24 0 395 292 220 8 chr4 84792217 84792453 -99496209 + L3 LINE CR1 1166 1451 -126 1886 182 0 0 chr4 84792528 84792825 -99495837 + AluJo SINE Alu 1 297 -15 26 30 0 0 chr4 84792857 84792890 -99495772 + AT_rich Low_complexity Low_complexity 1 33 0 230 186 34 0 chr4 84792928 84792987 -99495675 + L1ME LINE L1 5537 5597 -524 377 367 76 26 chr4 84793405 84793669 -99494993 + L1M4b LINE L1 20 296 -6563 2960 204 100 5 chr4 84793711 84794563 -99494099 + L1MB7 LINE L1 5234 6174 -10 31 0 0 0 chr4 84794631 84794662 -99494000 + AT_rich Low_complexity Low_complexity 1 31 0 946 196 0 0 chr4 84795076 84795234 -99493428 + FRAM SINE Alu 1 158 -8 1093 129 6 6 chr4 84795620 84795783 -99492879 - AluSg/x SINE Alu -16 296 134 362 118 0 59 chr4 84796168 84796236 -99492426 - Alu SINE Alu -3 299 236 6029 122 22 9 chr4 84796336 84797405 -99491257 - L1P LINE L1 -2718 3428 2346 387 226 0 0 chr4 84798275 84798377 -99490285 - MER3 DNA MER1_type -25 184 83 341 219 0 0 chr4 84798415 84798488 -99490174 - AluJ/F(R)AM SINE Alu -95 207 135 1428 145 0 18 chr4 84798488 84798716 -99489946 - AluJb SINE Alu 0 312 89 21 110 0 0 chr4 84800410 84800501 -99488161 + GC_rich Low_complexity Low_complexity 1 91 0 17981 156 71 15 chr4 84801582 84806359 -99482303 - L1PA3 LINE L1 -70 6400 1187 189 74 0 0 chr4 84806359 84806386 -99482276 + (TTG)n Simple_repeat Simple_repeat 1 27 0 17981 156 71 15 chr4 84806386 84807127 -99481535 - L1PA3 LINE L1 -5283 1187 488 292 236 146 45 chr4 84807198 84807465 -99481197 - L1ME4a LINE L1 -220 5901 5608 770 201 5 67 chr4 84807748 84807942 -99480720 + MER57B LTR ERV1 1 182 -252 1266 117 0 0 chr4 84809273 84809453 -99479209 + AluSg/x SINE Alu 133 312 0 518 194 32 0 chr4 84809453 84809546 -99479116 + AluJb SINE Alu 129 224 -88 305 362 57 28 chr4 84810005 84810146 -99478516 - MIR3 SINE MIR -54 154 10 2152 96 41 3 chr4 84811693 84811986 -99476676 - AluSx SINE Alu -8 304 1 463 177 183 67 chr4 84812102 84812266 -99476396 - MIR SINE MIR 0 262 80 252 292 39 69 chr4 84812926 84813056 -99475606 - L2 LINE L2 -20 3293 3168 262 313 30 0 chr4 84813793 84813892 -99474770 - Tigger3(Golem) DNA MER2_type -1493 1536 1435 293 29 14 167 chr4 84815233 84815657 -99473005 + (TA)n Simple_repeat Simple_repeat 1 359 0 352 345 109 13 chr4 84815821 84816059 -99472603 - MIR SINE MIR 0 262 2 3187 169 122 9 chr4 84816514 84817194 -99471468 + L1MB7 LINE L1 5306 6062 -122 2064 182 21 0 chr4 84817287 84817627 -99471035 + MER7A DNA MER2_type 2 346 0 1509 260 74 31 chr4 84817790 84818278 -99470384 + MER90 LTR ERV1 53 561 -14 1109 179 11 0 chr4 84818350 84818540 -99470122 + AluJo SINE Alu 1 192 -120 2207 114 0 0 chr4 84818578 84818868 -99469794 + AluSq SINE Alu 1 290 -23 249 183 118 65 chr4 84818878 84818971 -99469691 + L1ME4a LINE L1 5980 6077 -44 288 269 26 13 chr4 84819081 84819159 -99469503 - MER5A DNA MER1_type -4 185 107 26 30 0 0 chr4 84819940 84819973 -99468689 + AT_rich Low_complexity Low_complexity 1 33 0 2211 142 12 24 chr4 84820083 84820422 -99468240 + MER1B DNA MER1_type 3 337 0 1878 160 3 10 chr4 84820660 84820966 -99467696 - AluJb SINE Alu -8 304 1 21 57 0 0 chr4 84821350 84821385 -99467277 + AT_rich Low_complexity Low_complexity 1 35 0 252 313 229 15 chr4 84821565 84821608 -99467054 + MIR SINE MIR 48 81 -181 1845 137 65 3 chr4 84821608 84821901 -99466761 - AluSx SINE Alu -1 311 1 252 313 229 15 chr4 84821901 84821988 -99466674 + MIR SINE MIR 81 206 -56 1662 201 133 89 chr4 84822314 84822895 -99465767 + MER21B LTR ERV1 1 606 -257 733 263 76 10 chr4 84822895 84823093 -99465569 + LTR18A LTR ERVL 1 211 -146 656 205 31 22 chr4 84823159 84823375 -99465287 + LTR18A LTR ERVL 244 357 0 1749 204 2 0 chr4 84823445 84823973 -99464689 + HERVL18 LTR ERVL 96 693 -5354 2867 116 7 10 chr4 84823973 84824425 -99464237 + HERVL18 LTR ERVL 1324 1810 -4237 * 10233 128 3 14 chr4 84824417 84825901 -99462761 + HERVL18 LTR ERVL 2113 3581 -2466 1595 126 104 26 chr4 84825901 84826085 -99462577 + HERVL18 LTR ERVL 4394 4607 -1440 2911 71 17 3 chr4 84826085 84826435 -99462227 + THE1A LTR MaLR 1 355 0 1595 126 104 26 chr4 84826435 84826519 -99462143 + HERVL18 LTR ERVL 4607 4683 -1364 595 148 0 0 chr4 84826498 84826586 -99462076 + HERVL18 LTR ERVL 5960 6047 0 * 767 267 55 10 chr4 84826587 84826789 -99461873 + LTR18A LTR ERVL 1 211 -146 486 169 186 44 chr4 84826867 84826945 -99461717 + LTR18B LTR ERVL 393 459 -155 477 0 0 0 chr4 84826945 84826998 -99461664 + (GA)n Simple_repeat Simple_repeat 2 54 0 486 169 186 44 chr4 84826998 84827102 -99461560 + LTR18B LTR ERVL 459 601 -13 445 155 14 0 chr4 84827145 84827216 -99461446 + MER21B LTR ERV1 685 756 -107 1798 161 30 10 chr4 84827307 84827612 -99461050 - L1MC1 LINE L1 0 6333 6023 1665 148 0 47 chr4 84827619 84827896 -99460766 + AluJo SINE Alu 1 264 -48 1402 207 83 13 chr4 84828041 84828355 -99460307 - LTR48B LTR ERV1 -308 336 1 207 143 0 82 chr4 84828522 84828571 -99460091 + L2 LINE L2 3269 3313 0 9029 90 46 4 chr4 84829055 84830298 -99458364 + L1P3 LINE L1 10 1304 -5157 6979 122 0 12 chr4 84830302 84831241 -99457421 + L1P3 LINE L1 1592 2518 -3943 1826 106 8 0 chr4 84831241 84831487 -99457175 + AluY SINE Alu 50 297 -14 6979 122 0 12 chr4 84831487 84831610 -99457052 + L1P3 LINE L1 2518 2641 -3820 2364 69 3 0 chr4 84831807 84832096 -99456566 + AluY SINE Alu 1 290 -21 357 93 0 40 chr4 84832097 84832172 -99456490 + (TA)n Simple_repeat Simple_repeat 1 72 0 1054 147 28 66 chr4 84832325 84832536 -99456126 - L1MC3 LINE L1 -180 7605 7403 996 254 168 35 chr4 84832859 84833280 -99455382 - MER21B LTR ERV1 -75 856 320 1508 138 24 16 chr4 84833280 84833526 -99455136 - LOR1-int LTR ERV1 -1044 7076 6829 2092 166 18 29 chr4 84833583 84833891 -99454771 + MER49 LTR ERV1 1 311 -612 2432 52 13 23 chr4 84833891 84834197 -99454465 + AluY SINE Alu 1 303 -8 2092 166 18 29 chr4 84834197 84834607 -99454055 + MER49 LTR ERV1 311 753 -170 1500 242 66 75 chr4 84835078 84835263 -99453399 + LTR38 LTR ERV1 1 186 -370 2052 70 63 46 chr4 84835263 84835565 -99453097 + AluY SINE Alu 1 307 -4 1500 242 66 75 chr4 84835565 84835940 -99452722 + LTR38 LTR ERV1 186 556 0 645 241 29 6 chr4 84835940 84836100 -99452562 - MER34 LTR ERV1 -378 164 1 207 0 0 0 chr4 84836225 84836248 -99452414 + (T)n Simple_repeat Simple_repeat 1 23 0 1249 283 83 22 chr4 84837005 84837140 -99451522 + MER45C DNA AcHobo 140 265 -688 2011 85 4 0 chr4 84837140 84837400 -99451262 - AluY SINE Alu -17 294 34 1249 283 83 22 chr4 84837400 84837720 -99450942 + MER45C DNA AcHobo 265 623 -330 1248 167 60 13 chr4 84837755 84837988 -99450674 + MER45C DNA AcHobo 710 953 0 372 283 19 0 chr4 84838911 84839017 -99449645 + LTR43 LTR ERV1 189 296 -306 227 242 111 71 chr4 84839037 84839235 -99449427 + LTR35 LTR ERV1 413 618 0 335 275 108 63 chr4 84839427 84839871 -99448791 + HAL1b LINE L1 361 824 -524 2060 145 0 0 chr4 84840058 84840362 -99448300 + AluSx SINE Alu 1 304 -8 369 277 178 40 chr4 84840363 84840717 -99447945 + L1M4 LINE L1 2218 2620 -3526 1480 168 139 38 chr4 84841474 84841813 -99446849 + MER93b LTR ERV1 1 373 0 302 320 105 28 chr4 84842668 84842849 -99445813 - L2 LINE L2 -1010 2304 2110 366 252 35 0 chr4 84843504 84843619 -99445043 + L2 LINE L2 3195 3313 0 221 258 48 0 chr4 84843818 84843880 -99444782 - L2 LINE L2 -1368 1946 1882 518 65 0 0 chr4 84843945 84844007 -99444655 + U6 snRNA snRNA 1 62 -45 225 247 65 0 chr4 84844040 84844117 -99444545 + L1MEd LINE L1 94 175 -5944 * 438 266 75 60 chr4 84844113 84844365 -99444297 + L1ME3A LINE L1 5911 6166 -4 683 313 83 47 chr4 84844384 84844912 -99443750 + L1MEd LINE L1 150 696 -5423 2167 100 7 0 chr4 84845060 84845350 -99443312 - AluSx SINE Alu -20 292 1 284 292 9 35 chr4 84845799 84845912 -99442750 + GA-rich Low_complexity Low_complexity 5 114 0 2522 92 2 37 chr4 84846615 84847161 -99441501 - MER51A LTR ERV1 -15 619 1 3395 96 68 150 chr4 84847163 84847931 -99440731 - Tigger3(Golem) DNA MER2_type -7 3022 2318 970 243 78 0 chr4 84848206 84848424 -99440238 + MIR SINE MIR 2 236 -26 347 264 79 21 chr4 84849011 84849184 -99439478 - L1M4c LINE L1 -994 1749 1367 6648 191 48 35 chr4 84849184 84850445 -99438217 + Charlie6 DNA MER1_type 1556 2844 -656 1460 106 39 10 chr4 84850445 84850653 -99438009 - L1PA11 LINE L1 -2 6172 5959 6648 191 48 35 chr4 84850653 84850975 -99437687 + Charlie6 DNA MER1_type 2844 3160 -340 821 294 90 9 chr4 84850980 84851401 -99437261 + LTR16B LTR ERVL 7 461 -3 1319 191 86 25 chr4 84851403 84851728 -99436934 + Charlie6 DNA MER1_type 3155 3499 -1 1628 133 74 35 chr4 84851889 84852174 -99436488 + AluJo SINE Alu 5 300 -12 496 206 130 111 chr4 84852433 84852473 -99436189 + MIR SINE MIR 16 54 -208 1794 174 3 3 chr4 84852473 84852777 -99435885 + AluJb SINE Alu 5 308 -4 496 206 130 111 chr4 84852777 84852969 -99435693 + MIR SINE MIR 54 248 -14 23 0 0 0 chr4 84853071 84853094 -99435568 + AT_rich Low_complexity Low_complexity 1 23 0 2474 190 23 66 chr4 84853346 84853921 -99434741 - MLT2B3 LTR ERVL -4 550 1 512 250 103 0 chr4 84854802 84854938 -99433724 - MIR SINE MIR -56 206 57 21 0 0 0 chr4 84855901 84855922 -99432740 + AT_rich Low_complexity Low_complexity 1 21 0 1896 136 124 15 chr4 84857008 84857346 -99431316 + THE1C LTR MaLR 1 375 0 6645 106 0 39 chr4 84857439 84858470 -99430192 - L1PA15 LINE L1 -4 6161 5134 6166 125 32 11 chr4 84858578 84859260 -99429402 - HSMAR2 DNA Mariner -318 984 274 2021 110 35 3 chr4 84859260 84859550 -99429112 - AluSx SINE Alu -13 299 1 6166 125 32 11 chr4 84859550 84859822 -99428840 - HSMAR2 DNA Mariner -1028 274 9 1011 274 13 0 chr4 84859984 84860221 -99428441 + MIR SINE MIR 10 249 -13 700 89 0 0 chr4 84860360 84860450 -99428212 - THE1B LTR MaLR 0 364 275 2632 183 235 35 chr4 84860450 84861450 -99427212 - MER52A LTR ERV1 -2 1276 58 242 315 0 0 chr4 84861641 84861714 -99426948 - MER52A LTR ERV1 -1682 73 1 * 2015 121 0 0 chr4 84861714 84861994 -99426668 - THE1B LTR MaLR -84 280 1 2049 179 66 35 chr4 84862104 84862557 -99426105 + MLT1C LTR MaLR 1 467 0 2314 113 0 0 chr4 84862775 84863075 -99425587 + AluSq SINE Alu 1 300 -13 21 0 0 0 chr4 84863183 84863204 -99425458 + AT_rich Low_complexity Low_complexity 1 21 0 273 321 9 19 chr4 84863264 84863370 -99425292 - MIR3 SINE MIR -1 207 103 9194 58 7 8 chr4 84863393 84864466 -99424196 + MER11C LTR ERVK 1 1071 0 1572 113 46 7 chr4 84865191 84865473 -99423189 + L1MA7 LINE L1 5999 6291 0 465 312 50 25 chr4 84865487 84865686 -99422976 - MIR SINE MIR -26 236 33 21 36 0 0 chr4 84866101 84866129 -99422533 + AT_rich Low_complexity Low_complexity 1 28 0 196 330 176 0 chr4 84866411 84866502 -99422160 - MIR SINE MIR -109 153 47 21 0 0 0 chr4 84866800 84866821 -99421841 + AT_rich Low_complexity Low_complexity 1 21 0 1290 126 40 0 chr4 84867293 84867491 -99421171 + AluSg/x SINE Alu 93 298 -12 301 98 0 0 chr4 84867737 84867778 -99420884 - MLT2F LTR ERVL 0 663 623 333 68 0 0 chr4 84867778 84867822 -99420840 + (TA)n Simple_repeat Simple_repeat 2 45 0 267 191 43 17 chr4 84867859 84867974 -99420688 + (TA)n Simple_repeat Simple_repeat 1 118 0 414 52 117 0 chr4 84868033 84868187 -99420475 + (TA)n Simple_repeat Simple_repeat 2 173 0 265 0 123 0 chr4 84868207 84868272 -99420390 + (TA)n Simple_repeat Simple_repeat 2 74 0 1219 241 68 10 chr4 84868296 84868607 -99420055 - MLT2F LTR ERVL -49 614 286 203 271 71 14 chr4 84868685 84868755 -99419907 + L2 LINE L2 3197 3270 -2 439 113 25 0 chr4 84868786 84868866 -99419796 + GA-rich Low_complexity Low_complexity 1 82 0 22 0 0 0 chr4 84869027 84869049 -99419613 + AT_rich Low_complexity Low_complexity 1 22 0 512 218 18 0 chr4 84869281 84869391 -99419271 + Charlie4 DNA MER1_type 14 125 -1836 437 331 44 34 chr4 84869662 84869955 -99418707 + MER89-int LTR ERV1 152 447 -4200 467 333 67 31 chr4 84870130 84870705 -99417957 + MER89-int LTR ERV1 2793 4066 -3825 333 355 0 0 chr4 84871107 84871200 -99417462 + MER89-int LTR ERV1 3785 3877 -2924 1361 236 84 79 chr4 84871291 84871825 -99416837 + MER89-int LTR ERV1 5285 5821 -1716 2373 106 0 3 chr4 84871854 84872165 -99416497 + AluSg SINE Alu 1 310 0 742 185 0 0 chr4 84872277 84872407 -99416255 + MER57B LTR ERV1 141 270 -164 230 156 109 16 chr4 84872413 84872477 -99416185 + MER21A LTR ERV1 480 549 -382 474 217 62 81 chr4 84872490 84872651 -99416011 + MER57A LTR ERV1 246 403 0 255 300 0 0 chr4 84872651 84872721 -99415941 + MIR SINE MIR 167 236 -26 579 336 61 42 chr4 84872920 84873280 -99415382 + MLT1J LTR MaLR 76 442 -69 503 191 0 22 chr4 84873675 84873764 -99414898 + MER21B LTR ERV1 1 87 -776 2682 207 116 33 chr4 84873780 84874514 -99414148 + MER21B LTR ERV1 8 802 -61 21 100 0 0 chr4 84874567 84874637 -99414025 + AT_rich Low_complexity Low_complexity 1 70 0 2121 109 13 3 chr4 84874789 84875093 -99413569 - AluSq SINE Alu -6 307 1 269 193 0 35 chr4 84877216 84877273 -99411389 + MER58B DNA MER1_type 4 58 -283 * 786 179 7 33 chr4 84877248 84877399 -99411263 + MER58B DNA MER1_type 195 341 0 1751 146 40 20 chr4 84878057 84878359 -99410303 + MER44D DNA MER2_type 32 609 0 2057 148 47 18 chr4 84879393 84879778 -99408884 + MSTD LTR MaLR 1 396 0 1745 182 28 27 chr4 84880068 84880519 -99408143 - LTR2B LTR ERV1 0 490 1 330 284 0 0 chr4 84880677 84880758 -99407904 - MER94 DNA DNA -18 116 36 482 265 49 39 chr4 84881060 84881347 -99407315 + L1ME LINE L1 731 1043 -5027 234 0 0 0 chr4 84881347 84881373 -99407289 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 482 265 49 39 chr4 84881373 84881499 -99407163 + L1ME LINE L1 1043 1166 -4904 2972 164 32 6 chr4 84881571 84882078 -99406584 - MLT2B1 LTR ERVL 0 520 1 714 281 26 57 chr4 84882079 84882463 -99406199 + L1ME LINE L1 1300 1671 -4590 1962 164 26 0 chr4 84883425 84883729 -99404933 + AluJb SINE Alu 1 312 0 839 295 36 13 chr4 84883936 84884241 -99404421 + AluJb SINE Alu 1 312 0 21 57 0 0 chr4 84884400 84884435 -99404227 + AT_rich Low_complexity Low_complexity 1 35 0 274 313 6 92 chr4 84885078 84885092 -99403570 + L2 LINE L2 2882 2896 -376 2577 124 69 43 chr4 84885092 84885584 -99403078 + MLT1D LTR MaLR 1 505 0 274 313 6 92 chr4 84885584 84885732 -99402930 + L2 LINE L2 2896 3030 -242 594 0 0 0 chr4 84885841 84885907 -99402755 + (TG)n Simple_repeat Simple_repeat 1 66 0 1905 148 7 3 chr4 84885922 84886213 -99402449 - AluJb SINE Alu -14 298 7 307 285 139 7 chr4 84886926 84887063 -99401599 - MIR SINE MIR -48 214 60 198 0 0 0 chr4 84887064 84887086 -99401576 + (TTA)n Simple_repeat Simple_repeat 3 24 0 21737 93 17 6 chr4 84887086 84887423 -99401239 - L1PA7 LINE L1 -18 6136 5804 2343 83 3 3 chr4 84887423 84887723 -99400939 - AluY SINE Alu -11 300 1 21737 93 17 6 chr4 84887723 84891280 -99397382 - L1PA7 LINE L1 -350 5804 2205 1836 160 7 0 chr4 84891280 84891574 -99397088 - AluJo SINE Alu -14 298 3 739 177 28 0 chr4 84891580 84891721 -99396941 - L1MC1 LINE L1 -208 6125 5981 598 293 105 31 chr4 84892431 84892856 -99395806 + MLT1H LTR MaLR 7 513 -36 1311 182 46 89 chr4 84893141 84893532 -99395130 + MLT1A2 LTR MaLR 1 374 0 574 249 90 41 chr4 84893561 84893806 -99394856 - MIR SINE MIR -4 258 2 1386 234 118 36 chr4 84895297 84895745 -99392917 - MLT1F LTR MaLR 0 542 58 1900 218 85 44 chr4 84895749 84896142 -99392520 - MLT1F LTR MaLR 0 542 122 2055 194 58 50 chr4 84896142 84896643 -99392019 - MLT1D LTR MaLR 0 505 1 1900 218 85 44 chr4 84896643 84896767 -99391895 - MLT1F LTR MaLR -420 122 4 1627 110 0 0 chr4 84896770 84896988 -99391674 - AluJb SINE Alu -12 300 83 396 303 97 20 chr4 84897134 84897329 -99391333 - MIR SINE MIR 0 262 53 227 265 189 38 chr4 84898541 84898673 -99389989 - MER117 DNA MER1_type 0 197 46 331 267 22 0 chr4 84898981 84899071 -99389591 - MIR SINE MIR -13 249 158 675 173 51 43 chr4 84899815 84899997 -99388665 + L1P4 LINE L1 5633 5812 -356 206 289 77 29 chr4 84900005 84900109 -99388553 - MIR SINE MIR -56 206 98 289 360 82 7 chr4 84900110 84900257 -99388405 + MIR3 SINE MIR 14 171 -37 205 51 51 0 chr4 84900713 84900752 -99387910 + (TA)n Simple_repeat Simple_repeat 1 41 0 2503 175 107 11 chr4 84900757 84901317 -99387345 - L1MB7 LINE L1 -20 6164 5551 21 36 0 0 chr4 84901991 84902019 -99386643 + AT_rich Low_complexity Low_complexity 1 28 0 433 129 0 0 chr4 84902636 84902698 -99385964 - FLAM_A SINE Alu -67 65 4 1185 255 179 18 chr4 84902704 84903250 -99385412 + L1MC4a LINE L1 5362 5995 -1813 409 143 0 39 chr4 84903263 84903340 -99385322 + Tigger4(Zombi) DNA MER2_type 2658 2731 0 361 328 82 0 chr4 84904794 84904928 -99383734 + MIR SINE MIR 97 241 -21 465 156 0 0 chr4 84905090 84905167 -99383495 + FLAM_A SINE Alu 66 142 0 1613 189 7 11 chr4 84905391 84905697 -99382965 - AluJo SINE Alu 0 307 3 356 250 154 15 chr4 84905871 84906007 -99382655 + MIR SINE MIR 54 208 -54 2096 85 27 24 chr4 84906832 84907127 -99381535 + AluSx SINE Alu 1 296 -16 2673 173 47 79 chr4 84907410 84908156 -99380506 + MER50 LTR ERV1 13 734 0 298 247 56 27 chr4 84909221 84909370 -99379292 + MIR3 SINE MIR 28 185 -23 305 316 126 29 chr4 84909532 84909738 -99378924 + MIR SINE MIR 36 261 -1 774 284 19 14 chr4 84909776 84909984 -99378678 + MIR SINE MIR 31 239 -23 1506 209 7 7 chr4 84910155 84910452 -99378210 - AluJo SINE Alu -15 297 1 190 176 0 0 chr4 84911308 84911342 -99377320 + MIR3 SINE MIR 160 193 -15 835 201 40 6 chr4 84911353 84911527 -99377135 - AluJb SINE Alu 0 312 133 209 304 0 0 chr4 84911922 84911978 -99376684 + L2 LINE L2 3258 3313 0 307 301 97 0 chr4 84912591 84912704 -99375958 + MIR SINE MIR 53 176 -86 432 99 14 0 chr4 84912730 84912801 -99375861 - L1MD3 LINE L1 -1 7994 7923 4962 145 24 18 chr4 84912964 84913167 -99375495 - L1MC1 LINE L1 0 6333 6133 1956 151 0 0 chr4 84913167 84913466 -99375196 - AluJo SINE Alu -11 301 3 4962 145 24 18 chr4 84913466 84914164 -99374498 - L1MC1 LINE L1 -200 6133 5426 373 260 75 81 chr4 84914384 84914527 -99374135 + MIR SINE MIR 1 144 -118 2470 62 0 7 chr4 84914527 84914831 -99373831 + AluY SINE Alu 1 302 -9 373 260 75 81 chr4 84914831 84914860 -99373802 + MIR SINE MIR 144 172 -90 5694 152 21 15 chr4 84915363 84916852 -99371810 - L1MA9 LINE L1 0 6312 4811 384 241 117 14 chr4 84917241 84917386 -99371276 - LTR33A LTR ERVL -101 422 263 510 231 19 106 chr4 84917393 84917593 -99371069 - LTR33A LTR ERVL -367 156 1 464 279 127 25 chr4 84917736 84917933 -99370729 - MIR SINE MIR -26 236 20 357 345 66 15 chr4 84918105 84918268 -99370394 + MER5A DNA MER1_type 7 188 -1 2255 92 0 0 chr4 84918310 84918618 -99370044 - AluSg SINE Alu 0 308 1 2023 115 58 144 chr4 84918778 84919195 -99369467 + Tigger2 DNA MER2_type 1 2665 -53 24815 96 10 3 chr4 84919200 84923654 -99365008 - L1PA8 LINE L1 -13 6159 1675 222 127 56 28 chr4 84923742 84923813 -99364849 + (TA)n Simple_repeat Simple_repeat 2 74 0 672 254 50 54 chr4 84923865 84924144 -99364518 - L2 LINE L2 0 3313 3036 22 0 0 0 chr4 84924455 84924477 -99364185 + AT_rich Low_complexity Low_complexity 1 22 0 2011 137 0 0 chr4 84924539 84924824 -99363838 + AluSx SINE Alu 1 285 -27 1501 157 39 25 chr4 84925435 84925715 -99362947 + AluJb SINE Alu 3 286 -26 23 0 0 0 chr4 84925716 84925739 -99362923 + AT_rich Low_complexity Low_complexity 1 23 0 2257 110 17 0 chr4 84925985 84926286 -99362376 - AluSq SINE Alu -7 306 1 1007 219 5 5 chr4 84927769 84927961 -99360701 + MIR SINE MIR 12 203 -59 249 333 12 0 chr4 84928031 84928112 -99360550 + CT-rich Low_complexity Low_complexity 1 82 0 251 250 50 75 chr4 84928567 84928687 -99359975 + MER31-int LTR ERV1 3929 4045 -891 288 254 0 0 chr4 84928746 84928801 -99359861 + MIR SINE MIR 196 250 -12 360 293 147 0 chr4 84929703 84929819 -99358843 - MIR SINE MIR -126 136 4 2249 123 123 5 chr4 84930472 84930855 -99357807 + MSTA LTR MaLR 1 428 0 1592 227 6 14 chr4 84930855 84931203 -99357459 + MLT1A1 LTR MaLR 10 354 -11 306 270 54 54 chr4 84931296 84931481 -99357181 - L1M4 LINE L1 -1534 4612 4428 27 49 0 0 chr4 84931568 84931609 -99357053 + AT_rich Low_complexity Low_complexity 1 41 0 7661 22 1 1 chr4 84931631 84933197 -99355465 - L1PA4 LINE L1 -7 6148 4583 1203 34 0 0 chr4 84933197 84933345 -99355317 + L1P LINE L1 4311 4458 -1688 236 296 12 0 chr4 84933927 84934008 -99354654 - L1M4 LINE L1 -2309 3837 3756 2616 107 8 5 chr4 84934436 84934810 -99353852 - THE1C LTR MaLR 0 375 1 24 32 0 0 chr4 84935262 84935293 -99353369 + AT_rich Low_complexity Low_complexity 1 31 0 2217 156 10 3 chr4 84935711 84936096 -99352566 + MLT1B LTR MaLR 3 390 0 391 288 36 6 chr4 84937756 84937956 -99350706 + L1ME LINE L1 5294 5493 -673 372 285 111 19 chr4 84938457 84938664 -99349998 + MLT1J1 LTR MaLR 5 230 -216 458 242 18 67 chr4 84938665 84938830 -99349832 + MLT1J2 LTR MaLR 259 415 -35 668 247 107 30 chr4 84939503 84939917 -99348745 + L2 LINE L2 2543 3084 -229 6744 74 12 3 chr4 84940042 84940945 -99347717 - L1PA8 LINE L1 -6 6166 5256 2743 171 26 0 chr4 84940975 84941467 -99347195 - L1MB2 LINE L1 -39 6132 5628 205 316 76 0 chr4 84941475 84941554 -99347108 + L2 LINE L2 3167 3251 -62 406 279 27 41 chr4 84941595 84941728 -99346934 + L2 LINE L2 3153 3285 -28 2280 142 72 36 chr4 84941728 84942144 -99346518 - MSTB1 LTR MaLR 0 432 2 406 279 27 41 chr4 84942144 84942157 -99346505 + L2 LINE L2 3285 3297 -16 1582 235 32 41 chr4 84942465 84942656 -99346006 - L1MC4 LINE L1 -120 7922 7731 1923 168 27 46 chr4 84942656 84943026 -99345636 - THE1B LTR MaLR 0 364 2 1582 235 32 41 chr4 84943026 84943370 -99345292 - L1MC4 LINE L1 -311 7731 7392 606 105 0 0 chr4 84944598 84944703 -99343959 + (TAGA)n Simple_repeat Simple_repeat 4 108 0 1804 132 111 18 chr4 84944703 84945045 -99343617 + THE1C LTR MaLR 2 375 0 868 211 35 0 chr4 84945070 84945241 -99343421 + MER45A DNA AcHobo 2 178 0 1369 249 23 80 chr4 84945246 84945644 -99343018 - LTR16A LTR ERVL 0 450 76 382 298 204 18 chr4 84945824 84946099 -99342563 + MLT1J2 LTR MaLR 1 326 -124 318 376 79 17 chr4 84946266 84946684 -99341978 + L2 LINE L2 1002 1445 -1869 507 311 142 61 chr4 84947541 84948229 -99340433 + L2 LINE L2 1564 2307 -1007 519 262 182 33 chr4 84948699 84949210 -99339452 + MLT1G1 LTR MaLR 2 595 0 272 366 49 7 chr4 84949774 84949916 -99338746 + L2 LINE L2 2293 2440 -874 395 262 7 71 chr4 84950394 84950535 -99338127 + MER5B DNA MER1_type 42 173 -5 380 318 38 114 chr4 84950539 84950828 -99337834 + L2 LINE L2 3006 3272 0 282 29 0 0 chr4 84950926 84950961 -99337701 + (T)n Simple_repeat Simple_repeat 1 35 0 2492 135 39 10 chr4 84951035 84951451 -99337211 + MSTA LTR MaLR 1 428 0 370 278 171 17 chr4 84951937 84952113 -99336549 - MIR SINE MIR -11 251 49 1939 157 41 26 chr4 84952407 84952607 -99336055 + MER7A DNA MER2_type 1 208 -2830 1826 147 51 42 chr4 84952607 84952941 -99335721 + MER1B DNA MER1_type 1 337 0 1939 157 41 26 chr4 84952941 84953083 -99335579 + MER7A DNA MER2_type 208 346 0 3116 141 28 21 chr4 84953108 84953640 -99335022 + MER34B LTR ERV1 1 536 -29 602 199 105 17 chr4 84953654 84953835 -99334827 - L1MD3 LINE L1 -45 7950 7754 943 180 60 120 chr4 84954667 84954984 -99333678 - L1MA9 LINE L1 -144 6190 5893 3510 193 49 30 chr4 84955413 84955926 -99332736 - L1MB7 LINE L1 0 6184 5645 2277 106 13 0 chr4 84955926 84956229 -99332433 + AluSx SINE Alu 1 307 -5 3510 193 49 30 chr4 84956229 84956589 -99332073 - L1MB7 LINE L1 -539 5645 5294 2073 119 20 0 chr4 84956625 84956918 -99331744 - AluSp SINE Alu -14 299 1 227 174 14 14 chr4 84956989 84957058 -99331604 - L1ME3A LINE L1 -207 5963 5895 206 269 0 90 chr4 84957650 84957717 -99330945 + MIR3 SINE MIR 13 73 -135 25 31 0 0 chr4 84957837 84957869 -99330793 + AT_rich Low_complexity Low_complexity 1 32 0 2694 116 95 0 chr4 84959446 84959879 -99328783 + MER101 LTR ERV1 1 474 0 23 33 0 0 chr4 84960514 84960544 -99328118 + AT_rich Low_complexity Low_complexity 1 30 0 763 244 63 18 chr4 84960953 84961174 -99327488 + MLT1G1 LTR MaLR 6 236 -359 22 0 0 0 chr4 84962294 84962316 -99326346 + AT_rich Low_complexity Low_complexity 1 22 0 643 116 27 18 chr4 84963078 84963190 -99325472 - L1MA9 LINE L1 0 6312 6200 22 35 0 0 chr4 84963533 84963562 -99325100 + AT_rich Low_complexity Low_complexity 1 29 0 281 304 149 60 chr4 84964176 84964344 -99324318 + MIR SINE MIR 15 197 -65 1655 95 92 83 chr4 84964344 84964681 -99323981 + THE1C LTR MaLR 1 340 -35 2180 103 8 14 chr4 84964681 84965196 -99323466 + THE1C-int LTR MaLR 80 630 -950 205 379 0 0 chr4 84965199 84965265 -99323397 + MIR SINE MIR 197 262 0 2567 95 14 22 chr4 84965313 84965680 -99322982 + THE1B LTR MaLR 1 364 0 966 321 60 18 chr4 84966072 84966570 -99322092 - LTR33 LTR ERVL -2 519 1 1641 204 156 51 chr4 84966768 84967333 -99321329 - MLT1E3 LTR MaLR 0 624 1 2226 112 27 27 chr4 84967920 84968295 -99320367 + THE1C LTR MaLR 1 375 0 2104 91 0 7 chr4 84968886 84969161 -99319501 + AluY SINE Alu 1 273 -38 257 0 30 0 chr4 84969169 84969202 -99319460 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 410 108 176 0 chr4 84969415 84969489 -99319173 + MSTB LTR MaLR 1 87 -339 181 231 0 26 chr4 84969528 84969567 -99319095 - MIR SINE MIR -141 67 30 1549 232 37 6 chr4 84970179 84970533 -99318129 + MLT1A1 LTR MaLR 1 365 0 185 65 32 0 chr4 84971409 84971440 -99317222 + (CA)n Simple_repeat Simple_repeat 2 33 0 2302 102 0 0 chr4 84972491 84972786 -99315876 - AluSx SINE Alu -17 295 1 21 0 0 0 chr4 84983203 84983224 -99305438 + AT_rich Low_complexity Low_complexity 1 21 0 340 338 59 56 chr4 84983386 84983709 -99304953 + L1MC4a LINE L1 4729 5052 -1094 303 299 75 43 chr4 84983901 84984529 -99304133 + L1MC4a LINE L1 5256 5460 -842 1899 176 0 0 chr4 84984800 84985095 -99303567 - AluJb SINE Alu -17 295 1 444 341 80 23 chr4 84985137 84985313 -99303349 + MIR3 SINE MIR 17 202 -6 213 39 0 0 chr4 84985832 84985858 -99302804 + (A)n Simple_repeat Simple_repeat 1 26 0 314 23 23 0 chr4 84986951 84986994 -99301668 + (TG)n Simple_repeat Simple_repeat 2 45 0 244 153 20 71 chr4 84987004 84987059 -99301603 + CT-rich Low_complexity Low_complexity 3 52 -43 4092 100 15 5 chr4 84987059 84987658 -99301004 - L1PA13 LINE L1 -3 6160 5556 244 153 20 71 chr4 84987658 84987700 -99300962 + CT-rich Low_complexity Low_complexity 52 95 0 309 269 101 0 chr4 84987759 84987878 -99300784 + MER102a DNA MER1_type 169 299 -31 895 236 62 16 chr4 84987963 84988205 -99300457 + MIR SINE MIR 2 254 -8 1625 172 97 40 chr4 84988242 84988643 -99300019 - MER31B LTR ERV1 0 466 43 290 213 33 0 chr4 84988858 84988919 -99299743 - MIR SINE MIR -112 150 88 24 67 0 0 chr4 84989029 84989074 -99299588 + AT_rich Low_complexity Low_complexity 1 45 0 575 292 168 0 chr4 84990292 84990501 -99298161 - MIR SINE MIR -4 258 15 824 234 140 89 chr4 84990857 84991064 -99297598 - MER34 LTR ERV1 -2 540 345 1963 131 32 0 chr4 84991064 84991347 -99297315 - AluSc SINE Alu -17 292 1 824 234 140 89 chr4 84991347 84991653 -99297009 - MER34 LTR ERV1 -197 345 1 234 280 127 34 chr4 84991702 84991820 -99296842 + MIR SINE MIR 134 262 0 1541 118 0 9 chr4 84992729 84992940 -99295722 - AluSx SINE Alu -103 209 1 758 180 72 90 chr4 84993987 84994209 -99294453 - MER20 DNA MER1_type -1 218 1 862 289 35 32 chr4 84994337 84994663 -99293999 + L1MC4a LINE L1 5513 5842 -1966 1596 160 6 50 chr4 84994663 84994981 -99293681 + AluSx SINE Alu 1 304 -8 862 289 35 32 chr4 84994981 84995027 -99293635 + L1MC4a LINE L1 5842 5886 -1922 237 216 86 17 chr4 84995181 84995297 -99293365 + L1MC4a LINE L1 6051 6174 -1634 2104 135 15 6 chr4 84996179 84996519 -99292143 + MER61A LTR ERV1 1 343 0 550 264 54 0 chr4 84996581 84996710 -99291952 - MIR SINE MIR -109 153 18 2456 139 46 5 chr4 84996914 84997324 -99291338 + MSTB1 LTR MaLR 3 429 -3 340 262 110 18 chr4 84997371 84997535 -99291127 - L2 LINE L2 -338 2976 2798 * 630 266 34 89 chr4 84997520 84997847 -99290815 + L2 LINE L2 3005 3313 0 273 146 0 0 chr4 84998548 84998596 -99290066 + (TTCC)n Simple_repeat Simple_repeat 1 48 0 378 167 0 0 chr4 84998660 84998732 -99289930 - Charlie2a DNA MER1_type -1541 1321 1250 235 328 16 16 chr4 84998941 84999066 -99289596 + L1ME4a LINE L1 5589 5713 -408 358 188 53 75 chr4 84999789 84999922 -99288740 + L1ME4a LINE L1 5928 6057 -64 325 398 88 19 chr4 85000888 85001250 -99287412 - L2 LINE L2 -505 2809 2423 647 209 93 28 chr4 85001543 85001725 -99286937 - MER63A DNA MER1_type 0 210 17 190 195 24 0 chr4 85002639 85002680 -99285982 + L2 LINE L2 3230 3271 -1 249 57 0 0 chr4 85003158 85003193 -99285469 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 546 55 33 0 chr4 85003367 85003458 -99285204 + (TA)n Simple_repeat Simple_repeat 2 95 0 735 179 14 0 chr4 85003458 85003598 -99285064 - AluJb SINE Alu -89 223 82 632 287 24 29 chr4 85003939 85004148 -99284514 - MIR SINE MIR -14 248 41 1204 194 85 20 chr4 85004231 85004525 -99284137 + MER2 DNA MER2_type 33 345 0 1770 169 51 20 chr4 85004662 85005016 -99283646 + MLT1A1 LTR MaLR 1 365 0 326 211 139 86 chr4 85005510 85005719 -99282943 + MER112 DNA MER1_type 1 220 -40 2086 100 3 24 chr4 85006240 85006554 -99282108 + AluSg SINE Alu 1 308 0 270 367 62 48 chr4 85006769 85006979 -99281683 - L2 LINE L2 -38 3234 3022 543 259 7 7 chr4 85007204 85007347 -99281315 + Charlie1a DNA MER1_type 6 148 -1307 253 237 0 17 chr4 85007468 85007527 -99281135 + MIR3 SINE MIR 103 160 -48 262 231 92 0 chr4 85007528 85007593 -99281069 - MER5A DNA MER1_type -2 187 117 315 0 0 0 chr4 85007977 85008012 -99280650 + (TG)n Simple_repeat Simple_repeat 2 36 0 216 222 22 0 chr4 85009023 85009068 -99279594 - L2 LINE L2 -3 3310 3265 23 0 0 0 chr4 85009076 85009099 -99279563 + AT_rich Low_complexity Low_complexity 1 23 0 302 290 221 11 chr4 85010596 85010858 -99277804 + L2 LINE L2 1892 2208 -1106 256 85 0 186 chr4 85010866 85010925 -99277737 - MLT1H LTR MaLR 0 549 502 840 262 63 5 chr4 85011453 85011674 -99276988 - MIR SINE MIR 0 262 29 1216 327 124 36 chr4 85012292 85013433 -99275229 + L2 LINE L2 1730 2971 -343 1728 198 38 45 chr4 85013452 85013737 -99274925 + MLT1C LTR MaLR 22 304 -163 2596 124 11 49 chr4 85013737 85013981 -99274681 - MSTA LTR MaLR 0 428 207 2218 102 0 7 chr4 85013981 85014275 -99274387 - AluSg SINE Alu -18 292 1 2596 124 11 49 chr4 85014275 85014475 -99274187 - MSTA LTR MaLR -221 207 1 1728 198 38 45 chr4 85014475 85014634 -99274028 + MLT1C LTR MaLR 304 463 -4 1075 119 67 26 chr4 85015366 85015560 -99273102 - MER30 DNA MER1_type -28 202 1 234 211 184 0 chr4 85016104 85016180 -99272482 - L2 LINE L2 -37 3235 3146 193 255 43 0 chr4 85016374 85016421 -99272241 - L2 LINE L2 -92 3221 3173 546 299 36 12 chr4 85017199 85017366 -99271296 + MIR SINE MIR 9 179 -83 2767 122 141 72 chr4 85017528 85018047 -99270615 + LTR8A LTR ERV1 1 579 -148 1141 54 54 18 chr4 85018047 85018214 -99270448 + L1PA6 LINE L1 5980 6152 -2 2767 122 141 72 chr4 85018214 85018374 -99270288 + LTR8A LTR ERV1 579 727 0 240 200 0 0 chr4 85018919 85018969 -99269693 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 1020 184 0 0 chr4 85019696 85019864 -99268798 + FAM SINE Alu 1 168 -7 310 258 84 58 chr4 85019925 85020115 -99268547 - L2 LINE L2 -8 3305 3111 196 265 73 0 chr4 85021719 85021787 -99266875 - MIR SINE MIR -70 192 120 316 246 95 95 chr4 85022403 85022529 -99266133 - MIR SINE MIR -63 145 35 224 257 14 43 chr4 85022664 85022734 -99265928 + L2 LINE L2 2690 2757 -557 1125 178 134 11 chr4 85022852 85023121 -99265541 - AluJo SINE Alu 0 302 1 210 230 58 46 chr4 85023232 85023319 -99265343 - L2 LINE L2 0 3272 3185 2039 225 83 20 chr4 85024050 85024686 -99263976 - L1ME1 LINE L1 -18 6148 5473 192 293 20 88 chr4 85024811 85024958 -99263704 + L2 LINE L2 3159 3295 -18 212 306 174 7 chr4 85025438 85025582 -99263080 - L3 LINE CR1 -3 1574 1407 898 280 100 29 chr4 85026119 85026717 -99261945 + MLT2F LTR ERVL 1 648 -15 732 192 0 15 chr4 85027115 85027245 -99261417 + FLAM_C SINE Alu 1 128 -5 235 244 81 0 chr4 85028525 85028611 -99260051 - MIR3 SINE MIR -21 187 95 234 239 0 34 chr4 85028638 85028726 -99259936 + MER113 DNA MER1_type? 22 106 -415 21 36 0 0 chr4 85028872 85028900 -99259762 + AT_rich Low_complexity Low_complexity 1 28 0 228 143 0 0 chr4 85029497 85029539 -99259123 + (TG)n Simple_repeat Simple_repeat 1 42 0 397 240 168 8 chr4 85029872 85029997 -99258665 + MIR SINE MIR 2 146 -116 252 0 0 0 chr4 85030234 85030262 -99258400 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 249 108 0 0 chr4 85031501 85031538 -99257124 + (TA)n Simple_repeat Simple_repeat 1 37 0 181 302 16 0 chr4 85033418 85033481 -99255181 - MIR SINE MIR -81 127 64 326 230 40 60 chr4 85035249 85035349 -99253313 - MER5B DNA MER1_type 0 178 81 21 0 0 0 chr4 85035706 85035727 -99252935 + AT_rich Low_complexity Low_complexity 1 21 0 267 295 0 31 chr4 85036415 85036544 -99252118 + L1MA9 LINE L1 5933 6057 -255 218 149 40 14 chr4 85036583 85036657 -99252005 + (TA)n Simple_repeat Simple_repeat 1 76 0 242 135 0 39 chr4 85036672 85036724 -99251938 + L1MA9 LINE L1 6225 6274 -38 283 215 160 95 chr4 85037177 85037377 -99251285 + MER112 DNA MER1_type 1 213 -47 24 0 0 0 chr4 85037453 85037477 -99251185 + AT_rich Low_complexity Low_complexity 1 24 0 209 339 219 17 chr4 85037973 85038330 -99250332 + L2 LINE L2 2843 3271 -1 270 282 13 0 chr4 85040000 85040078 -99248584 + (TA)n Simple_repeat Simple_repeat 1 79 0 261 0 0 0 chr4 85040121 85040150 -99248512 + (CA)n Simple_repeat Simple_repeat 1 29 0 26 0 0 0 chr4 85040724 85040750 -99247912 + GC_rich Low_complexity Low_complexity 1 26 0 213 121 0 0 chr4 85040869 85040902 -99247760 + (CGG)n Simple_repeat Simple_repeat 2 34 0 371 294 106 19 chr4 85041468 85041628 -99247034 - MIR SINE MIR -38 224 51 421 191 151 132 chr4 85041653 85041741 -99246921 - MER5A DNA MER1_type -21 168 74 2100 71 58 0 chr4 85041741 85042036 -99246626 - AluSq SINE Alu -1 312 1 421 191 151 132 chr4 85042036 85042099 -99246563 - MER5A DNA MER1_type -115 74 14 3641 51 4 0 chr4 85042099 85042550 -99246112 + L1PA5 LINE L1 5702 6154 0 304 274 20 0 chr4 85042578 85042680 -99245982 + MER117 DNA MER1_type 1 104 -93 226 331 154 0 chr4 85042910 85043040 -99245622 - MIR SINE MIR -38 224 75 1779 193 142 27 chr4 85043112 85043563 -99245099 - MLT1D LTR MaLR 0 505 3 276 30 0 0 chr4 85044468 85044501 -99244161 + (CA)n Simple_repeat Simple_repeat 1 33 0 619 261 98 58 chr4 85044516 85044792 -99243870 + L2 LINE L2 3023 3309 -4 274 301 44 18 chr4 85044797 85044910 -99243752 - MIR SINE MIR -61 147 32 22 35 0 0 chr4 85045393 85045422 -99243240 + AT_rich Low_complexity Low_complexity 1 29 0 255 244 0 0 chr4 85045794 85045872 -99242790 + CT-rich Low_complexity Low_complexity 2 79 0 862 193 77 2 chr4 85046216 85046499 -99242163 - MLT2B1 LTR ERVL 0 520 166 232 172 16 16 chr4 85046515 85046579 -99242083 + (TA)n Simple_repeat Simple_repeat 1 64 0 28 48 0 0 chr4 85046597 85046639 -99242023 + AT_rich Low_complexity Low_complexity 1 42 0 3552 169 60 34 chr4 85046662 85047478 -99241184 + L1MB8 LINE L1 5341 6177 -1 249 329 0 27 chr4 85049144 85049217 -99239445 - L2 LINE L2 -12 3260 3190 1473 285 37 43 chr4 85049498 85050006 -99238656 - L2 LINE L2 -4 3309 2805 349 291 0 18 chr4 85050017 85050127 -99238535 + MLT1J1 LTR MaLR 23 130 -316 2298 94 7 0 chr4 85050939 85051236 -99237426 - AluSp SINE Alu -10 303 5 247 263 225 0 chr4 85051300 85051380 -99237282 - L2 LINE L2 -17 3296 3199 1714 216 107 26 chr4 85051436 85051903 -99236759 - MLT1D LTR MaLR 0 505 1 256 327 13 47 chr4 85052064 85052214 -99236448 + MIR SINE MIR 52 196 -66 27 49 0 0 chr4 85053124 85053165 -99235497 + AT_rich Low_complexity Low_complexity 1 41 0 392 185 64 16 chr4 85053274 85053432 -99235230 + MER58A DNA MER1_type 3 219 -5 414 0 0 0 chr4 85054841 85054887 -99233775 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 1924 155 0 38 chr4 85054965 85055282 -99233380 + AluJb SINE Alu 1 305 -7 327 288 188 0 chr4 85056453 85056613 -99232049 + MIR SINE MIR 73 262 0 444 276 83 45 chr4 85057388 85057544 -99231118 + MIR3 SINE MIR 34 195 -13 221 289 216 10 chr4 85057617 85057714 -99230948 + MIR SINE MIR 30 146 -62 234 0 0 0 chr4 85057932 85057958 -99230704 + (TTTTTG)n Simple_repeat Simple_repeat 5 30 0 202 160 240 20 chr4 85059200 85059250 -99229412 - L2 LINE L2 -63 3250 3190 1511 48 5 0 chr4 85059315 85059503 -99229159 - L1PA8 LINE L1 0 6172 5984 1177 208 135 13 chr4 85060855 85061167 -99227495 - MLT1E2 LTR MaLR -2 624 275 729 284 126 66 chr4 85061214 85061714 -99226948 - MLT1K LTR MaLR -57 531 2 397 306 109 27 chr4 85061892 85062075 -99226587 + MIR SINE MIR 65 262 0 1511 152 130 99 chr4 85062754 85063240 -99225422 - MLT1D LTR MaLR -4 501 1 2041 177 32 3 chr4 85063621 85064000 -99224662 - MLT1B LTR MaLR 0 390 1 3284 231 118 20 chr4 85064693 85065700 -99222962 + MER69B DNA AcHobo 1 1125 -1401 1979 146 14 0 chr4 85065700 85065994 -99222668 + AluSx SINE Alu 1 298 -14 3284 231 118 20 chr4 85065994 85066082 -99222580 + MER69B DNA AcHobo 1125 1203 -23 559 290 167 0 chr4 85067006 85067192 -99221470 + MIR SINE MIR 2 218 -44 197 335 129 6 chr4 85067683 85067853 -99220809 - MIR SINE MIR -59 203 13 298 82 55 14 chr4 85069322 85069395 -99219267 + (TAAA)n Simple_repeat Simple_repeat 2 77 0 307 312 140 16 chr4 85070288 85070474 -99218188 - L3 LINE CR1 -1096 481 273 193 167 37 0 chr4 85070845 85070899 -99217763 + (ATG)n Simple_repeat Simple_repeat 2 57 0 348 252 141 22 chr4 85070906 85071041 -99217621 + L1M4 LINE L1 4882 5032 -1114 213 94 0 0 chr4 85071672 85071704 -99216958 + (TTTC)n Simple_repeat Simple_repeat 3 34 0 506 293 18 36 chr4 85071881 85072048 -99216614 + MER5A DNA MER1_type 11 174 -15 370 340 56 88 chr4 85072175 85072807 -99215855 + L2 LINE L2 2676 3306 -7 420 211 64 18 chr4 85073123 85073232 -99215430 - L2 LINE L2 -2 3311 3198 256 161 31 9 chr4 85073434 85073688 -99214974 + AluJo SINE Alu 1 296 -6 1726 167 4 14 chr4 85074449 85074730 -99213932 - AluSx SINE Alu -22 290 13 2257 134 23 10 chr4 85074753 85075149 -99213513 - L1MA8 LINE L1 0 6473 6073 244 130 0 19 chr4 85075166 85075220 -99213442 - L1MA4 LINE L1 -2 6298 6246 538 179 8 30 chr4 85075226 85075360 -99213302 - L1MA8 LINE L1 -841 5487 5357 * 13134 186 21 25 chr4 85075343 85078271 -99210391 - L1MA8 LINE L1 -1308 5020 2083 2770 154 12 2 chr4 85078271 85078693 -99209969 + MSTB LTR MaLR 1 426 0 13134 186 21 25 chr4 85078693 85078808 -99209854 - L1MA8 LINE L1 -4245 2083 1969 1639 195 0 10 chr4 85078808 85079100 -99209562 - AluJo SINE Alu -21 291 3 13134 186 21 25 chr4 85079100 85079129 -99209533 - L1MA8 LINE L1 -4359 1969 1941 2742 10 0 19 chr4 85079129 85079441 -99209221 - AluYa5 SINE Alu -5 306 1 13134 186 21 25 chr4 85079441 85081233 -99207429 - L1MA8 LINE L1 -4387 1941 193 7424 41 1 1 chr4 85081233 85082882 -99205780 - L1PA5 LINE L1 -2 6152 4504 13134 186 21 25 chr4 85082882 85083071 -99205591 - L1MA8 LINE L1 -6135 193 5 450 315 212 5 chr4 85084450 85084653 -99204009 + MIR SINE MIR 8 252 -10 6248 151 54 26 chr4 85085323 85085887 -99202775 - Tigger3b DNA MER2_type -1797 1231 684 2493 62 0 3 chr4 85085887 85086195 -99202467 + AluY SINE Alu 1 307 -4 6248 151 54 26 chr4 85086195 85086814 -99201848 - Tigger3b DNA MER2_type -2344 684 15 208 288 0 0 chr4 85087135 85087215 -99201447 + T-rich Low_complexity Low_complexity 2 81 0 328 262 168 0 chr4 85087221 85087370 -99201292 - L1M4 LINE L1 -795 5351 5178 282 256 81 35 chr4 85087504 85087590 -99201072 + MIR SINE MIR 52 141 -121 279 0 0 0 chr4 85087945 85087976 -99200686 + (CA)n Simple_repeat Simple_repeat 2 32 0 2248 110 0 3 chr4 85087997 85088306 -99200356 - AluSg SINE Alu -2 308 1 262 266 46 110 chr4 85088595 85088768 -99199894 - L1ME LINE L1 -463 5658 5497 328 295 78 6 chr4 85088919 85089085 -99199577 - L1ME LINE L1 -1337 4809 4632 799 117 22 28 chr4 85089185 85089365 -99199297 + CT-rich Low_complexity Low_complexity 1 179 0 486 128 0 23 chr4 85089366 85089452 -99199210 + (TCTCCC)n Simple_repeat Simple_repeat 5 88 0 183 222 0 0 chr4 85089957 85090002 -99198660 + (TG)n Simple_repeat Simple_repeat 2 46 0 228 67 0 0 chr4 85093260 85093290 -99195372 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 261 348 129 68 chr4 85093360 85093857 -99194805 - L3 LINE CR1 -1 1576 1050 288 319 164 0 chr4 85093992 85094108 -99194554 - L2 LINE L2 -1 3271 3137 1612 219 68 11 chr4 85094467 85094909 -99193753 - MLT1C LTR MaLR 0 467 1 22 0 0 0 chr4 85095092 85095114 -99193548 + AT_rich Low_complexity Low_complexity 1 22 0 2213 109 0 25 chr4 85095234 85095554 -99193108 - AluSx SINE Alu 0 312 1 1030 259 16 23 chr4 85095811 85096120 -99192542 + HsTC2 DNA Tc2 8 314 -1584 746 205 35 6 chr4 85096132 85096303 -99192359 + HsTC2 DNA Tc2 1723 1898 0 498 283 75 56 chr4 85096443 85097070 -99191592 + L2 LINE L2 2517 3248 -65 841 272 79 29 chr4 85097556 85097872 -99190790 - MER102b DNA MER1_type -8 333 2 15065 132 21 2 chr4 85098158 85100530 -99188132 + Tigger1 DNA MER2_type 2 2418 0 474 255 62 38 chr4 85100542 85100832 -99187830 - L1ME4a LINE L1 -217 5904 5608 452 275 75 100 chr4 85101021 85101421 -99187241 - HAL1b LINE L1 -931 417 28 887 313 20 20 chr4 85101744 85102095 -99186567 - LTR16B LTR ERVL 0 464 114 361 312 157 34 chr4 85102620 85102985 -99185677 + L2 LINE L2 2708 3114 -199 432 261 15 103 chr4 85103231 85103426 -99185236 + L2 LINE L2 3136 3313 0 681 199 107 0 chr4 85105437 85105653 -99183009 + Charlie5 DNA MER1_type 2364 2602 -10 3122 212 11 17 chr4 85105798 85106445 -99182217 - MER82 DNA MER2_type 0 653 11 1923 154 0 13 chr4 85106523 85106835 -99181827 + AluJb SINE Alu 1 308 -4 290 299 94 0 chr4 85107276 85107403 -99181259 - L2 LINE L2 -552 2762 2624 366 203 63 0 chr4 85107406 85107485 -99181177 + MIR SINE MIR 179 262 0 1880 247 52 21 chr4 85108239 85108758 -99179904 - MER87 LTR ERV1 -6 535 1 1985 166 29 4 chr4 85109014 85109545 -99179117 + LTR49 LTR ERV1 1 595 0 25 31 0 0 chr4 85109864 85109896 -99178766 + AT_rich Low_complexity Low_complexity 1 32 0 8072 133 12 1 chr4 85109912 85111196 -99177466 + HSMAR2 DNA Mariner 3 1300 -2 386 287 16 25 chr4 85111435 85111557 -99177105 + MIR SINE MIR 30 150 -58 854 293 72 46 chr4 85112308 85112755 -99175907 + L2 LINE L2 2447 2910 -404 2662 107 3 3 chr4 85112755 85113119 -99175543 - THE1B LTR MaLR 0 364 1 854 293 72 46 chr4 85113119 85113172 -99175490 + L2 LINE L2 2910 2960 -354 1122 80 23 6 chr4 85113201 85113376 -99175286 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 272 26 0 26 chr4 85113376 85113414 -99175248 + (TTCC)n Simple_repeat Simple_repeat 2 38 0 381 184 28 9 chr4 85113468 85113577 -99175085 + CT-rich Low_complexity Low_complexity 5 115 0 278 238 24 36 chr4 85113584 85113668 -99174994 + MER112 DNA MER1_type 169 251 -9 1961 187 82 16 chr4 85114989 85115427 -99173235 - MLT1C LTR MaLR 0 467 1 2043 125 0 7 chr4 85115429 85115716 -99172946 - AluSx SINE Alu -16 296 12 860 237 8 70 chr4 85116858 85117115 -99171547 + MIR SINE MIR 3 243 -19 809 292 74 36 chr4 85117271 85117799 -99170863 + MLT1H LTR MaLR 1 548 -1 206 351 24 55 chr4 85117832 85117997 -99170665 - L2 LINE L2 -180 3092 2933 280 160 40 0 chr4 85118229 85118279 -99170383 - L2 LINE L2 -8 3305 3254 1515 208 81 43 chr4 85118280 85118722 -99169940 + MLT1C LTR MaLR 8 466 -1 212 235 24 118 chr4 85118729 85118814 -99169848 - L2 LINE L2 -52 3261 3185 455 295 89 31 chr4 85118947 85119171 -99169491 + MIR SINE MIR 23 259 -3 22 0 0 0 chr4 85120891 85120913 -99167749 + AT_rich Low_complexity Low_complexity 1 22 0 728 250 90 11 chr4 85121645 85121833 -99166829 + MIR SINE MIR 39 241 -21 35557 44 2 1 chr4 85122504 85127700 -99160962 + L1PA5 LINE L1 947 6146 -8 3857 260 64 14 chr4 85127988 85129273 -99159389 - L1MEc LINE L1 -5001 1395 47 3027 300 147 37 chr4 85129613 85131798 -99156864 - L2 LINE L2 -13 3300 874 204 135 0 0 chr4 85132749 85132786 -99155876 + (CA)n Simple_repeat Simple_repeat 2 38 0 224 39 0 0 chr4 85133740 85133766 -99154896 + (TA)n Simple_repeat Simple_repeat 2 27 0 1351 109 43 24 chr4 85133766 85133976 -99154686 - AluJb SINE Alu -3 309 96 1179 168 109 43 chr4 85134239 85134543 -99154119 + MER33 DNA MER1_type 1 324 0 1295 210 66 0 chr4 85136247 85136504 -99152158 + MLT1A1 LTR MaLR 92 365 0 487 259 143 70 chr4 85136877 85137178 -99151484 + MER102b DNA MER1_type 3 325 -16 271 259 0 0 chr4 85137798 85137852 -99150810 - L2 LINE L2 -36 3236 3183 555 197 7 35 chr4 85138316 85138458 -99150204 + MER69 DNA AcHobo 2385 2522 -4 2062 267 108 69 chr4 85139345 85139378 -99149284 + L2 LINE L2 2008 2038 -1275 1467 230 16 30 chr4 85139378 85139748 -99148914 + MLT1A1 LTR MaLR 1 365 0 2062 267 108 69 chr4 85139748 85139929 -99148733 + L2 LINE L2 2038 2210 -1103 2116 217 67 46 chr4 85139929 85140542 -99148120 + MLT1E2 LTR MaLR 1 626 0 2062 267 108 69 chr4 85140542 85140622 -99148040 + L2 LINE L2 2210 2285 -1028 770 172 0 8 chr4 85140622 85140750 -99147912 + FLAM_C SINE Alu 1 127 -6 2062 267 108 69 chr4 85140750 85141719 -99146943 + L2 LINE L2 2285 3309 -4 357 344 72 10 chr4 85142266 85142461 -99146201 + MIR SINE MIR 22 228 -34 234 308 29 39 chr4 85144453 85144557 -99144105 + MER5A DNA MER1_type 4 106 -83 223 211 18 18 chr4 85144579 85144636 -99144026 - MIR SINE MIR -12 250 194 198 288 34 17 chr4 85144799 85144858 -99143804 + MER5A DNA MER1_type 128 187 -2 272 358 0 0 chr4 85144870 85144951 -99143711 + L2 LINE L2 3201 3281 -32 24 0 0 0 chr4 85144953 85144977 -99143685 + AT_rich Low_complexity Low_complexity 1 24 0 207 196 36 18 chr4 85145773 85145829 -99142833 - MIR SINE MIR -12 250 194 279 278 118 41 chr4 85145887 85146056 -99142606 - MIR SINE MIR -40 222 41 300 382 27 5 chr4 85147608 85147794 -99140868 - L2 LINE L2 -505 2809 2620 26 50 0 0 chr4 85148419 85148459 -99140203 + AT_rich Low_complexity Low_complexity 1 40 0 224 316 13 13 chr4 85148689 85148768 -99139894 - MER5B DNA MER1_type -93 85 7 481 287 75 6 chr4 85149861 85150035 -99138627 + MLT1G1 LTR MaLR 1 186 -409 1218 279 138 21 chr4 85150044 85150478 -99138184 + MLT1G1 LTR MaLR 110 594 -1 2053 161 28 3 chr4 85150964 85151318 -99137344 - MLT1A1 LTR MaLR -2 363 1 228 67 0 0 chr4 85151888 85151918 -99136744 + (CA)n Simple_repeat Simple_repeat 2 31 0 310 246 12 144 chr4 85153508 85153675 -99134987 + MIR SINE MIR 118 262 0 289 81 0 0 chr4 85153817 85153895 -99134767 + Alu SINE Alu 250 327 0 1597 165 95 7 chr4 85154160 85154433 -99134229 + AluJo SINE Alu 1 297 -15 848 167 33 22 chr4 85154577 85154757 -99133905 - MER53 DNA DNA 0 189 8 21 0 0 0 chr4 85156059 85156080 -99132582 + AT_rich Low_complexity Low_complexity 1 21 0 730 254 76 0 chr4 85156206 85156391 -99132271 + MER58A DNA MER1_type 2 200 -24 313 333 85 20 chr4 85157019 85157220 -99131442 + L2 LINE L2 3092 3305 -8 237 355 122 0 chr4 85157663 85157770 -99130892 - L2 LINE L2 -37 3235 3116 1004 263 27 20 chr4 85158326 85158619 -99130043 - LTR16A1 LTR ERVL 0 457 163 2163 168 68 3 chr4 85158956 85159337 -99129325 - MSTB LTR MaLR -20 406 1 1925 162 7 0 chr4 85160895 85161197 -99127465 + AluJb SINE Alu 1 304 -8 1259 270 149 58 chr4 85161949 85162723 -99125939 + L2 LINE L2 2479 3313 0 1819 154 6 22 chr4 85162725 85163036 -99125626 + AluJo SINE Alu 1 306 -6 317 263 92 13 chr4 85163970 85164046 -99124616 - L2 LINE L2 -50 3222 3141 2136 113 0 0 chr4 85164101 85164376 -99124286 + AluSx SINE Alu 3 277 -35 21 0 0 0 chr4 85164379 85164400 -99124262 + AT_rich Low_complexity Low_complexity 1 21 0 400 281 18 67 chr4 85164674 85164838 -99123824 + L1MEd LINE L1 948 1103 -5016 416 289 110 38 chr4 85164889 85165262 -99123400 + HAL1 LINE L1 1299 1698 -809 2003 118 45 30 chr4 85165268 85165600 -99123062 + MER1B DNA MER1_type 1 337 0 291 314 179 9 chr4 85165615 85166045 -99122617 - L2 LINE L2 -349 2965 2463 1562 176 164 6 chr4 85166368 85166709 -99121953 + MSTD LTR MaLR 2 396 0 246 214 18 0 chr4 85166751 85166807 -99121855 + L2 LINE L2 3216 3272 0 28 29 0 0 chr4 85168108 85168143 -99120519 + AT_rich Low_complexity Low_complexity 1 35 0 212 231 46 31 chr4 85168903 85168968 -99119694 + CT-rich Low_complexity Low_complexity 3 68 0 261 292 0 0 chr4 85169175 85169240 -99119422 - L2 LINE L2 -85 3228 3164 270 0 0 0 chr4 85169249 85169279 -99119383 + (TA)n Simple_repeat Simple_repeat 2 31 0 2146 91 25 0 chr4 85169279 85169554 -99119108 - AluY SINE Alu -29 282 1 319 145 304 0 chr4 85169674 85169743 -99118919 + MER20 DNA MER1_type 1 90 -129 2384 90 0 0 chr4 85169776 85170075 -99118587 - AluSx SINE Alu -11 301 3 33 56 0 0 chr4 85170153 85170207 -99118455 + AT_rich Low_complexity Low_complexity 1 54 0 198 0 0 0 chr4 85171327 85171349 -99117313 + (TG)n Simple_repeat Simple_repeat 1 22 0 330 247 74 159 chr4 85171705 85171988 -99116674 + MIR SINE MIR 4 262 0 252 241 0 0 chr4 85171993 85172047 -99116615 + (TAG)n Simple_repeat Simple_repeat 1 54 0 263 80 0 40 chr4 85173335 85173385 -99115277 - HSMAR2 DNA Mariner -1 1301 1254 7369 133 32 29 chr4 85173423 85173523 -99115139 - HSMAR2 DNA Mariner -37 1265 1167 2869 7 0 0 chr4 85173523 85173833 -99114829 - AluYa5 SINE Alu -1 310 1 7369 133 32 29 chr4 85173833 85173942 -99114720 - HSMAR2 DNA Mariner -135 1167 1060 1944 150 10 7 chr4 85173942 85174235 -99114427 - AluJb SINE Alu -18 294 1 7369 133 32 29 chr4 85174235 85175284 -99113378 - HSMAR2 DNA Mariner -242 1060 1 1477 203 182 12 chr4 85175284 85175678 -99112984 + MLT1D LTR MaLR 39 503 -2 268 292 32 81 chr4 85175697 85175882 -99112780 - MLT1K LTR MaLR -24 564 389 350 259 213 35 chr4 85176370 85176718 -99111944 + MER110A LTR ERV1 43 452 -16 2157 133 128 8 chr4 85176844 85177226 -99111436 - MSTA LTR MaLR 0 428 1 8611 173 69 2 chr4 85177231 85178772 -99109890 - MSTA-int LTR MaLR -6 1645 1 2173 143 102 15 chr4 85178774 85179166 -99109496 - MSTA LTR MaLR -2 426 1 768 202 65 0 chr4 85179676 85179844 -99108818 + MER5A DNA MER1_type 4 182 -7 23 33 0 0 chr4 85181102 85181132 -99107530 + AT_rich Low_complexity Low_complexity 1 30 0 208 344 0 0 chr4 85181442 85181503 -99107159 + GA-rich Low_complexity Low_complexity 2 62 0 186 224 140 65 chr4 85183148 85183255 -99105407 + L2 LINE L2 2950 3064 -208 696 272 51 34 chr4 85183336 85183644 -99105018 - L2 LINE L2 -231 3082 2751 2175 265 78 89 chr4 85183644 85184705 -99103957 - L2 LINE L2 -434 2880 1830 1952 137 46 34 chr4 85184705 85185093 -99103569 + L1MC2 LINE L1 5943 6335 -9 2175 265 78 89 chr4 85185093 85185137 -99103525 - L2 LINE L2 -1484 1830 1787 816 226 262 14 chr4 85185139 85185498 -99103164 + LTR50 LTR ERVL 2 449 -346 317 309 36 9 chr4 85185637 85185747 -99102915 + L2 LINE L2 3137 3249 -23 1452 218 37 78 chr4 85185791 85186277 -99102385 - MLT1C LTR MaLR -1 466 1 204 40 0 0 chr4 85186780 85186805 -99101857 + (CA)n Simple_repeat Simple_repeat 2 26 0 46 33 0 0 chr4 85187338 85187398 -99101264 + AT_rich Low_complexity Low_complexity 1 60 0 2194 100 6 31 chr4 85188061 85188382 -99100280 + AluSq SINE Alu 1 313 0 366 308 76 19 chr4 85188828 85189246 -99099416 + L1MCc LINE L1 1288 2191 -4671 670 190 61 49 chr4 85189719 85189882 -99098780 - MER21B LTR ERV1 -52 811 647 951 267 43 9 chr4 85189884 85190116 -99098546 - MER21B LTR ERV1 -537 326 87 403 222 0 0 chr4 85190165 85190237 -99098425 - MER21B LTR ERV1 -773 90 19 365 186 17 32 chr4 85190229 85190319 -99098343 - MER21B LTR ERV1 -795 68 1 * 797 331 25 25 chr4 85190394 85190760 -99097902 + MLT1K LTR MaLR 217 582 -6 1649 208 82 0 chr4 85191774 85192092 -99096570 + MER44D DNA MER2_type 1 344 -361 907 152 0 13 chr4 85192087 85192238 -99096424 + MER44D DNA MER2_type 457 605 0 * 547 240 66 83 chr4 85192354 85192596 -99096066 - MLT1J LTR MaLR -35 476 239 207 167 0 0 chr4 85193255 85193291 -99095371 + (CA)n Simple_repeat Simple_repeat 1 36 0 2321 98 0 0 chr4 85193943 85194239 -99094423 + AluSq SINE Alu 4 299 -14 221 318 15 0 chr4 85194481 85194547 -99094115 + GA-rich Low_complexity Low_complexity 2 68 0 764 186 0 8 chr4 85194777 85194906 -99093756 - FLAM_A SINE Alu -5 128 1 227 313 69 38 chr4 85194931 85195062 -99093600 + L2 LINE L2 3178 3312 -1 2841 233 58 14 chr4 85195550 85196576 -99092086 + L1MA9 LINE L1 3185 4264 -3301 347 215 31 0 chr4 85196585 85196650 -99092012 - MER44D DNA MER2_type 0 705 639 610 278 9 0 chr4 85196656 85196872 -99091790 - L1M1 LINE L1 -5037 2528 2311 1037 132 94 19 chr4 85196872 85197085 -99091577 - MER44D DNA MER2_type -73 536 38 11725 157 34 57 chr4 85197105 85197765 -99090897 + L1MA9 LINE L1 4271 4944 -2787 454 76 15 0 chr4 85197765 85197831 -99090831 - MER41B LTR ERV1 -88 547 481 11725 157 34 57 chr4 85197831 85199634 -99089028 + L1MA9 LINE L1 4944 6786 -945 2027 91 0 0 chr4 85199634 85199886 -99088776 + AluSg SINE Alu 1 252 -58 11725 157 34 57 chr4 85199886 85200843 -99087819 + L1MA9 LINE L1 6786 7693 -38 2073 134 0 0 chr4 85200843 85201133 -99087529 - AluSx SINE Alu -10 302 13 11725 157 34 57 chr4 85201133 85201166 -99087496 + L1MA9 LINE L1 7693 7725 -6 23 33 0 0 chr4 85201767 85201797 -99086865 + AT_rich Low_complexity Low_complexity 1 30 0 36 23 0 0 chr4 85201893 85201936 -99086726 + AT_rich Low_complexity Low_complexity 1 43 0 942 268 98 34 chr4 85203317 85203695 -99084967 - LTR16A LTR ERVL -4 452 52 466 118 0 0 chr4 85204118 85204186 -99084476 + AluJb SINE Alu 64 131 -181 238 261 57 45 chr4 85204309 85204397 -99084265 + MLT1J LTR MaLR 218 306 -205 343 111 32 0 chr4 85205873 85205936 -99082726 + L1M4 LINE L1 5189 5253 -893 226 233 25 141 chr4 85205928 85206091 -99082571 + MLT1-int LTR MaLR 1173 1316 -55 * 1610 214 59 15 chr4 85206098 85206505 -99082157 + L1ME1 LINE L1 5374 5798 -368 1017 277 39 24 chr4 85206505 85206837 -99081825 + LTR16B LTR ERVL 126 462 -2 440 234 30 21 chr4 85206840 85206981 -99081681 + L1ME1 LINE L1 5996 6134 -32 2195 193 172 114 chr4 85208093 85208630 -99080032 - L1MC3 LINE L1 -1 7784 7280 247 293 0 38 chr4 85208630 85208736 -99079926 - MLT1F1 LTR MaLR -420 147 46 2195 193 172 114 chr4 85208736 85209112 -99079550 - L1MC3 LINE L1 -505 7280 6707 409 285 15 66 chr4 85210385 85210569 -99078093 + MIR SINE MIR 69 247 -15 279 298 66 16 chr4 85212159 85212280 -99076382 + MIR SINE MIR 136 262 0 320 284 88 34 chr4 85212480 85212684 -99075978 - L2 LINE L2 -137 3176 2962 214 402 18 9 chr4 85213256 85213368 -99075294 + MIR SINE MIR 20 132 -76 289 295 13 0 chr4 85213372 85213450 -99075212 - L2 LINE L2 -9 3263 3185 265 226 49 0 chr4 85214689 85214769 -99073893 - MIR SINE MIR -75 133 76 2034 114 0 0 chr4 85215534 85215806 -99072856 - AluSx SINE Alu -40 272 1 25 51 0 0 chr4 85216269 85216308 -99072354 + AT_rich Low_complexity Low_complexity 1 39 0 9050 97 5 33 chr4 85216759 85218486 -99070176 + L1PA8 LINE L1 4099 5873 -299 2078 139 0 3 chr4 85218486 85218789 -99069873 + AluSg SINE Alu 1 302 -8 9050 97 5 33 chr4 85218789 85218887 -99069775 + L1PA8 LINE L1 5873 5972 -200 2541 58 0 3 chr4 85218887 85219196 -99069466 + AluY SINE Alu 1 308 -3 9050 97 5 33 chr4 85219196 85219454 -99069208 + L1PA8 LINE L1 5972 6157 -15 347 291 13 7 chr4 85219454 85219600 -99069062 + (TA)n Simple_repeat Simple_repeat 2 148 0 492 48 0 0 chr4 85221406 85221469 -99067193 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 708 278 112 105 chr4 85221481 85221528 -99067134 - L2 LINE L2 -2465 849 804 740 209 25 100 chr4 85221528 85221767 -99066895 - MER58A DNA MER1_type 0 224 4 708 278 112 105 chr4 85221767 85221963 -99066699 - L2 LINE L2 -2510 804 611 2403 113 0 0 chr4 85221963 85222274 -99066388 + AluSx SINE Alu 1 311 -1 708 278 112 105 chr4 85222274 85222733 -99065929 - L2 LINE L2 -2703 611 141 185 333 35 0 chr4 85222943 85223000 -99065662 + L2 LINE L2 3174 3232 -40 1066 278 52 6 chr4 85224110 85224455 -99064207 - MLT1F1 LTR MaLR -6 561 201 244 268 14 0 chr4 85224500 85224571 -99064091 - MIR SINE MIR -128 134 63 4678 153 40 10 chr4 85224681 85225706 -99062956 - L1PA16 LINE L1 -23 6143 5085 890 152 0 0 chr4 85225759 85225884 -99062778 - AluJb SINE Alu -187 125 1 4391 224 17 19 chr4 85225884 85227399 -99061263 - L1PA13 LINE L1 -3929 2868 1336 398 320 16 16 chr4 85227660 85227788 -99060874 - MIR SINE MIR -112 150 23 884 196 45 6 chr4 85227864 85228043 -99060619 + MLT1B LTR MaLR 192 377 -13 271 303 165 37 chr4 85228868 85229086 -99059576 + MLT1J LTR MaLR 231 531 -84 22 0 0 0 chr4 85232438 85232460 -99056202 + AT_rich Low_complexity Low_complexity 1 22 0 5696 231 125 23 chr4 85232626 85235221 -99053441 + L1M3e LINE L1 6 2535 -4571 4081 105 86 82 chr4 85235361 85236702 -99051960 + pTR5 LTR ERV1 880 2438 0 21 0 0 0 chr4 85237923 85237944 -99050718 + AT_rich Low_complexity Low_complexity 1 21 0 6400 141 62 5 chr4 85238269 85238381 -99050281 + Tigger3b DNA MER2_type 1 105 -2923 2036 197 37 71 chr4 85238381 85238955 -99049707 - MER41C LTR ERV1 0 554 1 6400 141 62 5 chr4 85238955 85239141 -99049521 + Tigger3b DNA MER2_type 105 279 -2749 210 71 0 0 chr4 85239141 85239169 -99049493 + (TA)n Simple_repeat Simple_repeat 1 28 0 6400 141 62 5 chr4 85239169 85240034 -99048628 + Tigger3b DNA MER2_type 279 1231 0 1982 179 112 17 chr4 85240484 85240959 -99047703 + MLT2B1 LTR ERVL 1 520 0 548 214 55 32 chr4 85241492 85241712 -99046950 - L1MC4 LINE L1 -133 7909 7685 838 114 0 0 chr4 85243687 85243801 -99044861 - FLAM_C SINE Alu -17 116 3 239 259 19 74 chr4 85244078 85244186 -99044476 + MIR SINE MIR 91 192 -70 1308 168 31 88 chr4 85245178 85245394 -99043268 - MER31A LTR ERV1 -120 365 179 2076 144 3 0 chr4 85245394 85245700 -99042962 + AluSx SINE Alu 1 307 -5 1308 168 31 88 chr4 85245700 85245870 -99042792 - MER31A LTR ERV1 -306 179 1 281 79 0 0 chr4 85247281 85247319 -99041343 - U2 snRNA snRNA -150 38 1 2422 53 0 13 chr4 85248861 85249161 -99039501 + AluY SINE Alu 1 296 -15 245 225 42 28 chr4 85249213 85249284 -99039378 - MER5A DNA MER1_type -32 157 86 787 224 106 8 chr4 85249995 85250241 -99038421 - L1MD3 LINE L1 -6 7989 7720 308 192 13 51 chr4 85250247 85250325 -99038337 - MLT1F1 LTR MaLR -456 111 37 1472 140 77 7 chr4 85250326 85250626 -99038036 - L1MC3 LINE L1 -687 7098 6778 479 196 188 8 chr4 85251967 85252100 -99036562 + MER5B DNA MER1_type 2 158 -20 287 360 20 34 chr4 85252115 85252262 -99036400 - MER5A DNA MER1_type 0 189 45 2145 125 38 46 chr4 85254223 85254590 -99034072 + THE1B LTR MaLR 1 364 0 302 264 46 11 chr4 85254857 85254944 -99033718 - MIR3 SINE MIR -28 180 91 365 255 164 53 chr4 85255147 85255410 -99033252 + MLT1I LTR MaLR 92 383 -26 2187 180 68 2 chr4 85255860 85256260 -99032402 + MSTB LTR MaLR 1 426 0 329 302 52 0 chr4 85256868 85256984 -99031678 + MIR SINE MIR 71 192 -70 1580 166 14 141 chr4 85256989 85257548 -99031114 + LTR22B LTR ERVK 2 489 -3 3171 180 62 128 chr4 85258126 85258668 -99029994 - L1MC3 LINE L1 -55 7730 7154 2455 74 0 13 chr4 85258668 85258977 -99029685 - AluY SINE Alu -4 307 3 3171 180 62 128 chr4 85258977 85258997 -99029665 - L1MC3 LINE L1 -631 7154 7134 226 225 14 28 chr4 85258997 85259068 -99029594 - MLT1H LTR MaLR -401 148 79 3171 180 62 128 chr4 85259068 85259144 -99029518 - L1MC3 LINE L1 -651 7134 7055 2172 118 3 10 chr4 85259144 85259450 -99029212 - AluSx SINE Alu -8 304 1 3171 180 62 128 chr4 85259450 85259567 -99029095 - L1MC3 LINE L1 -730 7055 6932 1743 198 0 10 chr4 85259567 85259865 -99028797 + AluJo SINE Alu 1 295 -17 3171 180 62 128 chr4 85259865 85260301 -99028361 - L1MC3 LINE L1 -853 6932 6549 1777 159 83 29 chr4 85260301 85260827 -99027835 + MLT2A2 LTR ERVL 1 554 0 958 200 49 0 chr4 85260827 85261052 -99027610 - L1MC3 LINE L1 -1232 6553 6318 1490 199 44 3 chr4 85261061 85261378 -99027284 + MLT1B-int LTR MaLR 412 741 -630 340 222 0 0 chr4 85261496 85261568 -99027094 + MLT1B-int LTR MaLR 686 757 -978 1766 209 49 29 chr4 85261654 85262104 -99026558 + MLT1B-int LTR MaLR 1277 1735 0 1288 192 29 107 chr4 85262106 85262527 -99026135 + MLT1B LTR MaLR 3 390 0 327 310 78 0 chr4 85263301 85263430 -99025232 - LTR33 LTR ERVL -372 149 11 197 348 11 12 chr4 85264268 85264377 -99024285 - MIR SINE MIR -67 141 46 190 307 20 40 chr4 85264486 85264587 -99024075 - L2 LINE L2 -5 3267 3169 1467 249 95 30 chr4 85266075 85266749 -99021913 + MER20B DNA MER1_type 35 752 -31 678 291 21 0 chr4 85267680 85267869 -99020793 + MER63A DNA MER1_type 2 194 -16 298 279 131 8 chr4 85268037 85268159 -99020503 - MIR SINE MIR -13 249 113 1085 239 66 19 chr4 85268525 85268957 -99019705 + LTR68 LTR ERV1 107 608 -132 5086 234 37 33 chr4 85270079 85270316 -99018346 - L1M4 LINE L1 -2155 3991 3756 2492 125 59 7 chr4 85270316 85270723 -99017939 - MSTA LTR MaLR 0 428 1 5086 234 37 33 chr4 85270723 85272354 -99016308 - L1M4 LINE L1 -2390 3756 2125 327 296 25 0 chr4 85273140 85273221 -99015441 + L2 LINE L2 3227 3309 -4 296 285 106 49 chr4 85273397 85273520 -99015142 + MIR SINE MIR 25 154 -108 203 105 53 0 chr4 85274087 85274125 -99014537 + (TG)n Simple_repeat Simple_repeat 1 40 0 204 359 66 38 chr4 85274827 85274933 -99013729 - MIR SINE MIR -75 133 25 419 299 33 49 chr4 85275094 85275278 -99013384 - MIR SINE MIR -50 212 32 2020 235 106 4 chr4 85275846 85276362 -99012300 - MLT1F1 LTR MaLR 0 590 1 236 353 69 40 chr4 85276399 85276572 -99012090 - MIR3 SINE MIR -21 187 10 23 33 0 0 chr4 85276572 85276602 -99012060 + AT_rich Low_complexity Low_complexity 1 30 0 2192 124 0 0 chr4 85278682 85278980 -99009682 + AluSx SINE Alu 3 300 -12 184 197 15 15 chr4 85279137 85279203 -99009459 + GA-rich Low_complexity Low_complexity 2 67 0 315 232 0 0 chr4 85280185 85280241 -99008421 - MER2 DNA MER2_type 0 345 290 1285 144 35 0 chr4 85280273 85280475 -99008187 - MER2 DNA MER2_type -136 209 1 427 342 120 13 chr4 85280489 85280913 -99007749 - L1ME2 LINE L1 -290 5874 5408 393 199 9 148 chr4 85282175 85282391 -99006271 + L1MB7 LINE L1 877 1062 -5480 1685 184 90 11 chr4 85282576 85282941 -99005721 + MSTD LTR MaLR 1 394 -2 3899 189 60 26 chr4 85283050 85283705 -99004957 + L1MB7 LINE L1 5294 5926 -756 1387 185 40 77 chr4 85283705 85284083 -99004579 + MLT1A1 LTR MaLR 2 365 0 3899 189 60 26 chr4 85284083 85284331 -99004331 + L1MB7 LINE L1 5926 6164 -518 2047 125 0 3 chr4 85284331 85284619 -99004043 + AluSc SINE Alu 1 287 -22 3899 189 60 26 chr4 85284619 85285045 -99003617 + L1MB7 LINE L1 6164 6673 -9 202 316 40 0 chr4 85285141 85285217 -99003445 + MIR3 SINE MIR 130 208 0 256 207 0 17 chr4 85285290 85285348 -99003314 + CT-rich Low_complexity Low_complexity 2 58 0 37 23 0 0 chr4 85285539 85285583 -99003079 + AT_rich Low_complexity Low_complexity 1 44 0 220 302 48 0 chr4 85286017 85286080 -99002582 + L2 LINE L2 3121 3186 -86 1915 244 41 41 chr4 85287134 85287746 -99000916 - L1MC4a LINE L1 -5 7803 7192 1823 199 11 8 chr4 85287747 85288104 -99000558 + MLT1A1 LTR MaLR 1 358 -7 3476 248 75 43 chr4 85288111 85288963 -98999699 - L1MD3 LINE L1 -751 7244 6330 1148 242 0 0 chr4 85288963 85289186 -98999476 + MER58A DNA MER1_type 1 223 -1 3476 248 75 43 chr4 85289186 85289689 -98998973 - L1MD3 LINE L1 -1665 6330 5845 287 140 0 20 chr4 85289693 85289743 -98998919 + MER58A DNA MER1_type 175 223 -1 2169 164 39 90 chr4 85290200 85290742 -98997920 + MLT2B2 LTR ERVL 1 514 -1 298 183 0 0 chr4 85290991 85291051 -98997611 - L1MD3 LINE L1 -302 5819 5760 752 203 0 0 chr4 85291054 85291187 -98997475 - FLAM_C SINE Alu 0 133 1 1293 112 58 40 chr4 85291752 85291808 -98996854 + MER30 DNA MER1_type 4 58 -172 3116 94 34 0 chr4 85291808 85292246 -98996416 - MLT2A2 LTR ERVL 0 453 1 1293 112 58 40 chr4 85292246 85292412 -98996250 + MER30 DNA MER1_type 58 230 0 2059 204 49 7 chr4 85292776 85293221 -98995441 + LTR53 LTR ERVL 56 519 0 731 247 122 27 chr4 85294203 85294499 -98994163 + MSTD LTR MaLR 9 332 -64 544 122 0 0 chr4 85294504 85294610 -98994052 + AluSg/x SINE Alu 198 303 0 466 246 124 4 chr4 85295939 85296182 -98992480 + L1MC4a LINE L1 5199 5468 -743 561 263 30 73 chr4 85296284 85296584 -98992078 + L1MC4a LINE L1 5668 5954 -1854 29 28 0 0 chr4 85296731 85296767 -98991895 + AT_rich Low_complexity Low_complexity 1 36 0 449 252 81 8 chr4 85297166 85297289 -98991373 - MER114 LTR ERV -516 132 1 12293 147 14 6 chr4 85297326 85299457 -98989205 + L1PA10 LINE L1 1704 3851 -2295 6364 90 13 2 chr4 85299472 85300677 -98987985 + L1PA10 LINE L1 4951 6165 -3 2654 103 25 2 chr4 85300681 85301077 -98987585 + L1PA11 LINE L1 5769 6173 -1 42 20 0 0 chr4 85301203 85301252 -98987410 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr4 85301476 85301500 -98987162 + AT_rich Low_complexity Low_complexity 1 24 0 2084 150 12 0 chr4 85302498 85302831 -98985831 + MER1B DNA MER1_type 1 337 0 2762 122 14 2 chr4 85303942 85304384 -98984278 - L1PA15 LINE L1 -1 6164 5718 327 87 0 0 chr4 85304384 85304430 -98984232 + L1P LINE L1 4594 4639 -1507 22 56 0 0 chr4 85304912 85304948 -98983714 + AT_rich Low_complexity Low_complexity 1 36 0 429 20 0 0 chr4 85305224 85305274 -98983388 + (GAA)n Simple_repeat Simple_repeat 2 51 0 277 300 0 0 chr4 85306233 85306303 -98982359 - Charlie8 DNA MER1_type -1000 1417 1348 2136 88 3 14 chr4 85306444 85306740 -98981922 + AluY SINE Alu 1 293 -18 236 307 157 6 chr4 85307450 85307616 -98981046 - L1ME LINE L1 -316 5805 5615 1249 170 62 48 chr4 85308552 85308841 -98979821 - MER61B LTR ERV1 -29 396 104 541 161 0 0 chr4 85308903 85308996 -98979666 - MER61B LTR ERV1 -305 120 28 338 152 30 0 chr4 85309007 85309073 -98979589 + pTR5 LTR ERV1 737 804 -1634 978 170 0 0 chr4 85309173 85309326 -98979336 + AluJb SINE Alu 137 289 -23 190 369 36 9 chr4 85309356 85309467 -98979195 - MIR SINE MIR -1 261 148 5923 114 9 14 chr4 85309691 85310876 -98977786 - L1PA14 LINE L1 -9 6152 4963 4320 180 12 23 chr4 85310879 85311209 -98977453 - L1MB1 LINE L1 -22 6146 5814 1850 211 6 6 chr4 85311209 85311574 -98977088 - MLT1A1 LTR MaLR 0 365 1 4320 180 12 23 chr4 85311574 85312222 -98976440 - L1MB1 LINE L1 -354 5814 5180 2250 109 0 3 chr4 85312372 85312674 -98975988 + AluSg SINE Alu 1 301 -9 3488 169 7 75 chr4 85313998 85314471 -98974191 - MER67C LTR ERV1 0 710 206 2480 114 16 5 chr4 85314471 85314840 -98973822 - THE1C LTR MaLR 0 375 3 3488 169 7 75 chr4 85314840 85314878 -98973784 - MER67C LTR ERV1 -504 206 167 1956 103 32 11 chr4 85314878 85315159 -98973503 - AluSx SINE Alu -21 291 5 3488 169 7 75 chr4 85315159 85315408 -98973254 - MER67C LTR ERV1 -543 167 1 1353 287 74 69 chr4 85317358 85318090 -98970572 + L2 LINE L2 2340 3078 -235 1558 170 15 19 chr4 85318090 85318360 -98970302 - AluJo SINE Alu -30 282 14 1353 287 74 69 chr4 85318360 85318596 -98970066 + L2 LINE L2 3078 3311 -2 568 255 26 1 chr4 85318917 85319047 -98969615 - MLT1J2 LTR MaLR -291 159 43 406 280 45 38 chr4 85319076 85319233 -98969429 - MIR SINE MIR -58 204 47 322 301 196 6 chr4 85320558 85320721 -98967941 + MIR SINE MIR 69 262 0 1828 231 57 2 chr4 85320875 85321330 -98967332 - L1ME1 LINE L1 -5 6161 5682 891 170 6 60 chr4 85321333 85321515 -98967147 - FRAM SINE Alu -5 171 1 4204 224 31 18 chr4 85321516 85322938 -98965724 - L1ME1 LINE L1 -470 5696 4261 1552 89 31 0 chr4 85322940 85323164 -98965498 - L1PA7 LINE L1 0 6154 5924 7969 94 7 18 chr4 85323165 85324739 -98963923 - L1P3 LINE L1 -4216 2245 684 2073 311 73 37 chr4 85324788 85325785 -98962877 - HERV16 LTR ERVL -2237 2759 1727 241 292 45 0 chr4 85325853 85325942 -98962720 - L1MC4 LINE L1 -26 8016 7924 366 413 108 9 chr4 85327454 85327989 -98960673 - L2 LINE L2 -422 2892 2305 1785 162 27 21 chr4 85328024 85328358 -98960304 + Tigger2a DNA MER2_type 1 336 -98 229 247 26 52 chr4 85328371 85328448 -98960214 - L2 LINE L2 -75 3238 3164 890 239 91 13 chr4 85330262 85330492 -98958170 + MIR SINE MIR 15 262 0 1533 153 227 11 chr4 85331292 85331644 -98957018 + MSTA LTR MaLR 1 428 0 4143 199 49 6 chr4 85331644 85332466 -98956196 + MSTA-int LTR MaLR 1 857 -794 2860 148 16 2 chr4 85332474 85332927 -98955735 + MSTA-int LTR MaLR 1193 1651 0 1846 111 226 11 chr4 85332930 85333280 -98955382 + MSTA LTR MaLR 4 428 0 1589 46 0 0 chr4 85333992 85334189 -98954473 - L1PA4 LINE L1 0 6155 5959 2123 112 3 3 chr4 85335534 85335829 -98952833 + AluSc SINE Alu 1 295 -14 2067 203 40 21 chr4 85335840 85336363 -98952299 - L1MC3 LINE L1 -7 7778 7246 1627 115 4 0 chr4 85336463 85336689 -98951973 + AluSp SINE Alu 86 312 -1 2551 223 29 55 chr4 85336694 85337411 -98951251 + L1M4b LINE L1 1562 2348 -4611 2140 116 0 26 chr4 85337411 85337722 -98950940 + AluSg SINE Alu 4 306 -4 2551 223 29 55 chr4 85337722 85338134 -98950528 + L1M4b LINE L1 2348 2769 -4190 239 345 27 0 chr4 85338258 85338346 -98950316 + MIR SINE MIR 68 161 -101 204 40 0 0 chr4 85338346 85338371 -98950291 + (CAT)n Simple_repeat Simple_repeat 3 27 0 239 345 27 0 chr4 85338371 85338392 -98950270 + MIR SINE MIR 161 180 -82 271 271 37 19 chr4 85338760 85338867 -98949795 + LTR67 LTR ERVL 435 543 -14 726 296 134 21 chr4 85338895 85339223 -98949439 - LTR16A LTR ERVL -10 440 76 586 347 34 49 chr4 85339457 85340054 -98948608 - ERVL LTR ERVL -381 5383 4796 211 196 13 106 chr4 85340573 85340650 -98948012 - MIR SINE MIR -66 142 71 636 253 58 58 chr4 85341311 85341554 -98947108 - MER21B LTR ERV1 -23 582 427 11185 177 91 12 chr4 85341602 85345634 -98943028 + L1PB1 LINE L1 114 4464 -2398 3713 130 3 0 chr4 85345634 85346207 -98942455 + L1PB1 LINE L1 6291 6867 0 438 242 39 109 chr4 85346208 85346601 -98942061 - MER77 LTR ERV1 -267 338 54 1691 139 54 20 chr4 85347035 85347330 -98941332 - AluJb SINE Alu -6 306 2 4237 107 27 8 chr4 85347972 85348633 -98940029 - L1MA5A LINE L1 -3 6294 5621 557 303 173 0 chr4 85349188 85349373 -98939289 + MIR SINE MIR 45 261 -1 308 324 147 0 chr4 85352098 85352234 -98936428 - MIR SINE MIR -60 202 47 200 188 0 0 chr4 85352589 85352621 -98936041 + (CA)n Simple_repeat Simple_repeat 2 33 0 200 369 57 16 chr4 85352689 85352811 -98935851 + MIR SINE MIR 14 140 -122 261 87 22 0 chr4 85352834 85352880 -98935782 - MADE1 DNA Mariner -33 47 1 386 318 107 47 chr4 85352983 85353282 -98935380 - MLT1K LTR MaLR -81 507 191 3222 288 62 20 chr4 85353338 85353395 -98935267 - L2 LINE L2 -1089 2225 2172 2631 130 28 9 chr4 85353395 85353832 -98934830 - MER65A LTR ERV1 0 445 1 3222 288 62 20 chr4 85353832 85354894 -98933768 - L2 LINE L2 -1142 2172 1060 480 355 96 41 chr4 85354898 85355324 -98933338 + L2 LINE L2 2570 3029 -243 2327 53 3 0 chr4 85355324 85355647 -98933015 + AluY SINE Alu 1 324 0 480 355 96 41 chr4 85355647 85355703 -98932959 + L2 LINE L2 3029 3080 -192 616 316 5 15 chr4 85356484 85356680 -98931982 - MIR SINE MIR -32 230 37 225 94 0 0 chr4 85358000 85358032 -98930630 + (TTTTC)n Simple_repeat Simple_repeat 3 34 0 3461 121 65 0 chr4 85358141 85358661 -98930001 + MER41C LTR ERV1 1 554 0 326 209 46 186 chr4 85358759 85359022 -98929640 + MLT1L LTR MaLR 7 232 -383 2829 22 0 0 chr4 85359244 85359560 -98929102 - AluYb8 SINE Alu -2 316 1 1638 181 283 21 chr4 85359757 85360385 -98928277 + LTR48 LTR ERV1 1 707 0 1932 123 10 17 chr4 85361237 85361538 -98927124 + AluSx SINE Alu 1 299 -13 321 243 75 19 chr4 85361664 85361771 -98926891 - LTR33 LTR ERVL -7 514 402 982 230 31 68 chr4 85361771 85362122 -98926540 + MER21B LTR ERV1 430 730 -6 407 255 23 3 chr4 85362194 85362317 -98926345 - LTR33 LTR ERVL -137 384 252 * 1824 200 46 39 chr4 85362311 85362841 -98925821 + LTR26E LTR ERV1 8 622 0 603 293 17 11 chr4 85362843 85363017 -98925645 - LTR33 LTR ERVL -278 243 69 375 211 11 11 chr4 85363304 85363394 -98925268 - MLT1J LTR MaLR -5 506 417 272 146 36 0 chr4 85364609 85364664 -98923998 + GA-rich Low_complexity Low_complexity 3 59 0 197 270 90 54 chr4 85365803 85365914 -98922748 - MIR SINE MIR -17 245 131 471 269 171 32 chr4 85366339 85366555 -98922107 - MIR SINE MIR -15 247 2 199 229 257 0 chr4 85366952 85367022 -98921640 - MIR SINE MIR 0 262 175 37 52 0 0 chr4 85367410 85367468 -98921194 + AT_rich Low_complexity Low_complexity 1 58 0 300 301 88 36 chr4 85367976 85368169 -98920493 - L1ME4a LINE L1 -238 5883 5681 392 311 43 43 chr4 85368249 85368506 -98920156 - L1ME4a LINE L1 -477 5644 5388 180 319 193 25 chr4 85369097 85369216 -98919446 - MIR3 SINE MIR -36 172 34 279 191 0 32 chr4 85369890 85369953 -98918709 - AluJo SINE Alu 0 302 242 828 188 0 32 chr4 85369953 85370107 -98918555 - AluJo SINE Alu -161 151 3 241 337 0 31 chr4 85370187 85370285 -98918377 + MIR SINE MIR 32 126 -136 258 82 16 33 chr4 85370344 85370405 -98918257 + (TA)n Simple_repeat Simple_repeat 1 60 0 190 74 0 0 chr4 85370442 85370469 -98918193 + MIR SINE MIR 224 250 -12 662 191 0 7 chr4 85371605 85371752 -98916910 + GA-rich Low_complexity Low_complexity 3 148 0 236 198 33 44 chr4 85371909 85372000 -98916662 + L1MC4 LINE L1 6614 6703 -1339 * 277 247 0 0 chr4 85371981 85372070 -98916592 - L1MC4 LINE L1 -1340 6702 6614 * 318 250 0 62 chr4 85372062 85372158 -98916504 - L1MC4 LINE L1 -1339 6703 6614 335 303 0 0 chr4 85372161 85372250 -98916412 - L1MC4 LINE L1 -1340 6702 6614 2223 89 3 10 chr4 85372257 85372550 -98916112 - AluSg SINE Alu -19 291 1 368 271 66 18 chr4 85372551 85372717 -98915945 + L1ME4a LINE L1 5604 5777 -344 1759 220 87 103 chr4 85372739 85373598 -98915064 + LTR1B LTR ERV1 1 983 -37 226 278 120 23 chr4 85373736 85373869 -98914793 + L1ME4a LINE L1 5975 6120 -1 262 283 43 11 chr4 85374930 85375022 -98913640 - MIR SINE MIR -69 139 45 481 297 206 20 chr4 85375266 85375620 -98913042 + L3 LINE CR1 427 846 -731 257 227 29 122 chr4 85376600 85376772 -98911890 - MER103 DNA DNA -9 157 2 2028 141 0 0 chr4 85377204 85377503 -98911159 + AluSx SINE Alu 1 299 -13 38 0 0 0 chr4 85378446 85378484 -98910178 + AT_rich Low_complexity Low_complexity 1 38 0 7264 42 14 0 chr4 85378484 85379574 -98909088 - L1PA5 LINE L1 -8 6146 5051 17065 48 3 1 chr4 85379574 85381728 -98906934 + L1PA5 LINE L1 2889 5048 -1098 28 0 0 0 chr4 85382497 85382525 -98906137 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr4 85382729 85382758 -98905904 + AT_rich Low_complexity Low_complexity 1 29 0 208 222 0 0 chr4 85382815 85382860 -98905802 + (TG)n Simple_repeat Simple_repeat 1 45 0 39 88 0 0 chr4 85383834 85383936 -98904726 + AT_rich Low_complexity Low_complexity 1 102 0 2075 119 18 0 chr4 85383949 85384234 -98904428 + AluSq SINE Alu 7 296 -17 21 95 0 0 chr4 85384238 85384301 -98904361 + AT_rich Low_complexity Low_complexity 1 63 0 23 54 0 0 chr4 85384961 85384998 -98903664 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr4 85386525 85386555 -98902107 + AT_rich Low_complexity Low_complexity 1 30 0 299 80 40 0 chr4 85386615 85386665 -98901997 + CT-rich Low_complexity Low_complexity 1 52 0 1711 141 34 48 chr4 85387011 85387302 -98901360 + AluSx SINE Alu 4 290 -22 226 235 0 20 chr4 85387543 85387594 -98901068 + GA-rich Low_complexity Low_complexity 2 51 0 1530 187 80 37 chr4 85387717 85388091 -98900571 - MLT1B LTR MaLR 0 390 1 24 0 0 0 chr4 85389146 85389170 -98899492 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr4 85389186 85389217 -98899445 + AT_rich Low_complexity Low_complexity 1 31 0 588 306 81 78 chr4 85391146 85391750 -98896912 + L1MDa LINE L1 1501 2106 -4434 234 212 20 81 chr4 85392108 85392207 -98896455 + L1MC4 LINE L1 7920 8012 -30 24 0 0 0 chr4 85392384 85392408 -98896254 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr4 85393104 85393128 -98895534 + AT_rich Low_complexity Low_complexity 1 24 0 303 290 38 75 chr4 85393135 85393321 -98895341 + HAL1 LINE L1 6 184 -2323 239 0 32 0 chr4 85393322 85393353 -98895309 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1551 248 46 22 chr4 85393614 85394070 -98894592 - MLT1C LTR MaLR 0 467 1 234 328 31 8 chr4 85394132 85394260 -98894402 + L1MCa LINE L1 1503 1633 -4793 26 0 0 0 chr4 85395041 85395067 -98893595 + AT_rich Low_complexity Low_complexity 1 26 0 583 247 11 23 chr4 85398314 85398488 -98890174 + MER112 DNA MER1_type 1 172 -88 2494 84 0 0 chr4 85398953 85399264 -98889398 + AluY SINE Alu 1 311 0 506 173 10 0 chr4 85399265 85399369 -98889293 + (TA)n Simple_repeat Simple_repeat 1 105 0 451 177 76 86 chr4 85399787 85399985 -98888677 - L1ME2 LINE L1 -6 6158 5963 523 169 0 0 chr4 85399991 85400080 -98888582 - LTR40b LTR ERVL -5 457 369 334 180 0 34 chr4 85400523 85400612 -98888050 + L1MA8 LINE L1 6205 6290 -1 5400 166 29 14 chr4 85400665 85401989 -98886673 - L1MA4 LINE L1 -1 6299 4962 2176 133 0 0 chr4 85401989 85402291 -98886371 - AluSg SINE Alu -8 302 1 5400 166 29 14 chr4 85402291 85402335 -98886327 - L1MA4 LINE L1 -1338 4962 4920 195 129 0 0 chr4 85402335 85402366 -98886296 + (TC)n Simple_repeat Simple_repeat 2 32 0 325 58 39 0 chr4 85402372 85402424 -98886238 + (TTTCC)n Simple_repeat Simple_repeat 5 58 0 1530 167 64 19 chr4 85402435 85402699 -98885963 - AluSx SINE Alu -36 276 1 730 154 23 0 chr4 85402702 85402832 -98885830 - L1MA4 LINE L1 -1214 4932 4800 31231 103 22 32 chr4 85403229 85407022 -98881640 + L1PA7 LINE L1 10 3841 -2628 3069 167 23 14 chr4 85407022 85407597 -98881065 - LTR22 LTR ERVK 0 580 1 31231 103 22 32 chr4 85407597 85410180 -98878482 + L1PA7 LINE L1 3841 6449 -20 249 33 0 0 chr4 85410180 85410210 -98878452 + (TG)n Simple_repeat Simple_repeat 2 31 0 270 136 0 0 chr4 85410211 85410255 -98878407 + (TA)n Simple_repeat Simple_repeat 1 44 0 23 33 0 0 chr4 85410391 85410421 -98878241 + AT_rich Low_complexity Low_complexity 1 30 0 198 103 0 0 chr4 85410582 85410611 -98878051 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 301 276 121 31 chr4 85411056 85411443 -98877219 - L1MEd LINE L1 -3519 2610 2189 4411 98 70 139 chr4 85411562 85412738 -98875924 - pTR5 LTR ERV1 0 2429 31 467 262 90 34 chr4 85413203 85413360 -98875302 - HAL1 LINE L1 -861 1646 1470 2559 110 53 12 chr4 85413360 85413777 -98874885 + MER61C LTR ERV1 1 434 0 467 262 90 34 chr4 85413777 85413852 -98874810 - HAL1 LINE L1 -1037 1470 1401 403 249 78 95 chr4 85413905 85414251 -98874411 - L1MEd LINE L1 -5036 1083 744 397 385 8 20 chr4 85414269 85414518 -98874144 - L1M4 LINE L1 -1836 4310 4065 21 36 0 0 chr4 85414743 85414771 -98873891 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 85415339 85415367 -98873295 + AT_rich Low_complexity Low_complexity 1 28 0 483 247 48 108 chr4 85417796 85417962 -98870700 - MLT1H LTR MaLR -14 535 375 844 218 120 5 chr4 85417984 85418200 -98870462 - MLT1H LTR MaLR -296 253 13 830 268 35 75 chr4 85419067 85419488 -98869174 - L2 LINE L2 -275 3038 2623 555 298 165 50 chr4 85419490 85419933 -98868729 + LTR33A LTR ERVL 4 497 -26 486 257 0 0 chr4 85419963 85420068 -98868594 - L2 LINE L2 -689 2625 2521 1688 232 22 56 chr4 85420093 85420541 -98868121 + MER21B LTR ERV1 32 464 -399 1071 274 38 35 chr4 85420542 85420910 -98867752 - L2 LINE L2 -793 2521 2153 797 222 43 48 chr4 85420973 85421040 -98867622 + MER3 DNA MER1_type 3 69 -140 2198 193 43 22 chr4 85421040 85421533 -98867129 - MLT1D LTR MaLR 0 505 3 797 222 43 48 chr4 85421533 85421672 -98866990 + MER3 DNA MER1_type 69 208 -1 245 186 0 0 chr4 85421638 85421681 -98866981 - MER3 DNA MER1_type -127 82 40 * 613 248 53 0 chr4 85421681 85421814 -98866848 - L2 LINE L2 -2011 1303 1164 2246 141 17 11 chr4 85421825 85422187 -98866475 - THE1B LTR MaLR 0 364 1 2199 96 3 7 chr4 85422350 85422642 -98866020 - AluSx SINE Alu -21 291 1 829 124 0 0 chr4 85422657 85422770 -98865892 - AluSg SINE Alu -197 113 1 351 333 17 17 chr4 85423243 85423363 -98865299 + L1MEd LINE L1 505 624 -5495 455 227 0 102 chr4 85423500 85423628 -98865034 + FLAM_A SINE Alu 2 116 -17 225 160 0 20 chr4 85424037 85424087 -98864575 + HAL1 LINE L1 2078 2126 -381 7000 98 23 0 chr4 85424094 85425099 -98863563 + L1MA2 LINE L1 5277 6304 0 22 0 0 0 chr4 85425325 85425347 -98863315 + AT_rich Low_complexity Low_complexity 1 22 0 372 283 48 21 chr4 85425415 85425560 -98863102 + HAL1 LINE L1 2249 2397 -110 332 308 105 39 chr4 85425746 85426150 -98862512 - L1 LINE L1 -3210 2936 2498 1099 230 63 55 chr4 85426360 85426739 -98861923 + L1ME LINE L1 24 405 -6137 1435 187 15 8 chr4 85426753 85427020 -98861642 - AluJo SINE Alu -26 286 18 4165 230 53 53 chr4 85427023 85428793 -98859869 + L1ME LINE L1 391 2335 -4490 22 35 0 0 chr4 85428824 85428853 -98859809 + AT_rich Low_complexity Low_complexity 1 29 0 442 298 62 92 chr4 85428922 85429359 -98859303 + L1ME LINE L1 4526 4949 -1695 944 215 51 0 chr4 85429590 85429785 -98858877 - MER3 DNA MER1_type -4 205 1 238 223 96 0 chr4 85429807 85429901 -98858761 + L1ME LINE L1 6003 6105 -514 2008 136 37 37 chr4 85430132 85430507 -98858155 + THE1C LTR MaLR 1 375 0 2408 90 3 0 chr4 85432199 85432550 -98856112 - AluSq SINE Alu 0 352 1 335 313 62 8 chr4 85432816 85432944 -98855718 + MIR3 SINE MIR 63 197 -11 824 161 29 35 chr4 85432980 85433154 -98855508 - L1MD1 LINE L1 -5 6237 6065 216 344 75 11 chr4 85433950 85434043 -98854619 - L2 LINE L2 0 3272 3174 281 221 46 8 chr4 85434048 85434179 -98854483 + (TA)n Simple_repeat Simple_repeat 2 137 0 927 248 75 92 chr4 85434330 85434754 -98853908 - MLT1G3 LTR MaLR -178 417 1 309 328 52 20 chr4 85435278 85435528 -98853134 + MIR SINE MIR 2 259 -3 218 402 69 26 chr4 85436293 85436639 -98852023 + L2 LINE L2 211 571 -2743 267 373 7 7 chr4 85436639 85436781 -98851881 - HERV16 LTR ERVL -2397 3367 3226 255 342 43 21 chr4 85436897 85437078 -98851584 - LTR40b LTR ERVL -178 341 152 1410 343 58 22 chr4 85437237 85437894 -98850768 - HERV16 LTR ERVL -1911 3085 2460 655 299 20 69 chr4 85437929 85438233 -98850429 - HERV16 LTR ERVL -3296 2358 2070 276 346 29 0 chr4 85438600 85438704 -98849958 - HERV16 LTR ERVL -3418 1578 1472 2238 92 0 0 chr4 85438720 85439027 -98849635 - AluSg1 SINE Alu 0 307 1 1702 315 63 35 chr4 85439147 85440288 -98848374 - HERV16 LTR ERVL -3609 1387 191 2003 142 0 0 chr4 85441958 85442266 -98846396 + AluSq SINE Alu 1 308 0 389 244 61 0 chr4 85445347 85445462 -98843200 - MER103 DNA DNA -2 164 43 2270 107 0 3 chr4 85446520 85446829 -98841833 - AluSg SINE Alu 0 310 3 24 0 0 0 chr4 85446913 85446937 -98841725 + AT_rich Low_complexity Low_complexity 1 24 0 304 294 124 40 chr4 85447018 85447195 -98841467 - MIR SINE MIR -34 228 37 21 0 0 0 chr4 85447210 85447231 -98841431 + AT_rich Low_complexity Low_complexity 1 21 0 1806 61 4 0 chr4 85447331 85447562 -98841100 + L1PA6 LINE L1 5921 6152 -2 21 36 0 0 chr4 85447562 85447590 -98841072 + AT_rich Low_complexity Low_complexity 1 28 0 306 0 0 0 chr4 85447758 85447792 -98840870 + (CA)n Simple_repeat Simple_repeat 2 35 0 240 35 0 0 chr4 85448033 85448062 -98840600 + (TTG)n Simple_repeat Simple_repeat 2 30 0 500 262 35 7 chr4 85452825 85452970 -98835692 - MIR SINE MIR -13 249 101 2206 106 3 7 chr4 85454131 85454433 -98834229 + AluSx SINE Alu 1 301 -11 209 235 0 10 chr4 85454439 85454541 -98834121 + (TA)n Simple_repeat Simple_repeat 2 102 0 264 77 0 0 chr4 85454543 85454582 -98834080 + (TG)n Simple_repeat Simple_repeat 2 40 0 819 265 42 0 chr4 85454781 85454996 -98833666 + MIR SINE MIR 13 236 -26 2490 219 90 65 chr4 85455301 85456105 -98832557 - MER21B LTR ERV1 -21 842 19 399 234 13 0 chr4 85456127 85456204 -98832458 - MER21B LTR ERV1 -773 90 13 24 0 0 0 chr4 85457185 85457209 -98831453 + AT_rich Low_complexity Low_complexity 1 24 0 198 0 0 0 chr4 85457419 85457441 -98831221 + (A)n Simple_repeat Simple_repeat 1 22 0 * 222 91 0 0 chr4 85457440 85457473 -98831189 + (GA)n Simple_repeat Simple_repeat 2 34 0 311 158 158 105 chr4 85457498 85457593 -98831069 + MER103 DNA DNA 22 121 -45 849 247 32 4 chr4 85457681 85457928 -98830734 + L1M4 LINE L1 2318 2571 -3575 352 353 18 47 chr4 85458977 85459147 -98829515 + MIR3 SINE MIR 37 201 -7 194 227 23 0 chr4 85459766 85459810 -98828852 + L2 LINE L2 3224 3268 -4 1777 153 14 0 chr4 85460041 85460316 -98828346 - AluSx SINE Alu -29 283 5 1113 192 14 52 chr4 85460405 85460691 -98827971 - L1M4 LINE L1 -2446 3700 3426 673 254 0 64 chr4 85461010 85461183 -98827479 - MER58C DNA MER1_type 0 215 54 1836 148 7 14 chr4 85461747 85462038 -98826624 + AluJb SINE Alu 2 290 -22 29 60 0 0 chr4 85462829 85462879 -98825783 + AT_rich Low_complexity Low_complexity 1 50 0 2418 162 25 7 chr4 85463421 85463854 -98824808 + MER6 DNA MER2_type 165 865 0 1541 109 13 4 chr4 85464113 85464376 -98824286 + AluSc SINE Alu 65 309 0 804 264 59 34 chr4 85464389 85464829 -98823833 + L1MC5 LINE L1 7309 7759 -202 1640 187 18 26 chr4 85464909 85465251 -98823411 + MER44D DNA MER2_type 1 609 0 24 0 0 0 chr4 85466444 85466468 -98822194 + AT_rich Low_complexity Low_complexity 1 24 0 182 243 14 54 chr4 85466483 85466557 -98822105 + MER5A DNA MER1_type 11 81 -108 2081 194 55 2 chr4 85466818 85467256 -98821406 - MER65C LTR ERV1 0 461 1 535 177 35 9 chr4 85467899 85468012 -98820650 + U5 snRNA snRNA 1 116 0 26 30 0 0 chr4 85468620 85468653 -98820009 + AT_rich Low_complexity Low_complexity 1 33 0 198 150 0 0 chr4 85468956 85468996 -98819666 + (CA)n Simple_repeat Simple_repeat 2 41 0 1823 173 0 10 chr4 85469451 85469752 -98818910 - AluJo SINE Alu -11 301 4 2580 55 0 3 chr4 85470564 85470875 -98817787 - AluY SINE Alu -1 310 1 418 290 43 9 chr4 85471708 85471894 -98816768 - MIR SINE MIR 0 262 3 230 147 0 103 chr4 85472107 85472175 -98816487 - L1MC4 LINE L1 -1340 6702 6642 239 54 27 0 chr4 85472401 85472438 -98816224 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 294 29 0 0 chr4 85473031 85473066 -98815596 + (TG)n Simple_repeat Simple_repeat 2 36 0 276 214 36 0 chr4 85473401 85473457 -98815205 - MIR SINE MIR -1 261 204 2174 97 3 0 chr4 85473618 85473908 -98814754 + AluSc SINE Alu 2 291 -18 1574 239 106 16 chr4 85474178 85474622 -98814040 - LTR40a LTR ERVL -4 515 32 194 295 146 84 chr4 85474631 85475384 -98813278 - L2 LINE L2 -816 2498 1699 181 361 105 8 chr4 85475676 85475809 -98812853 - MIR SINE MIR -106 156 11 2173 112 0 0 chr4 85477488 85477784 -98810878 + AluSx SINE Alu 1 296 -16 438 20 0 0 chr4 85479327 85479378 -98809284 + (CA)n Simple_repeat Simple_repeat 1 51 0 196 340 85 11 chr4 85479901 85479995 -98808667 + L2 LINE L2 3169 3269 -3 440 297 7 35 chr4 85480539 85480684 -98807978 + MER5A DNA MER1_type 35 175 -14 1879 137 17 0 chr4 85481377 85481676 -98806986 - AluSq SINE Alu -9 304 1 255 203 0 0 chr4 85482027 85482096 -98806566 + (TA)n Simple_repeat Simple_repeat 1 69 0 1759 145 3 21 chr4 85482177 85482486 -98806176 - AluSx SINE Alu 0 312 5 511 246 76 18 chr4 85482517 85482688 -98805974 + LTR37B LTR ERV1 7 187 -281 711 210 66 31 chr4 85482849 85483106 -98805556 + LTR37B LTR ERV1 198 463 -5 21 0 0 0 chr4 85484213 85484234 -98804428 + AT_rich Low_complexity Low_complexity 1 21 0 222 211 19 0 chr4 85484706 85484758 -98803904 + (TTG)n Simple_repeat Simple_repeat 2 54 0 323 348 111 32 chr4 85484793 85485046 -98803616 + L2 LINE L2 2704 2976 -338 25 0 0 0 chr4 85486477 85486502 -98802160 + AT_rich Low_complexity Low_complexity 1 25 0 38 61 0 0 chr4 85487279 85487345 -98801317 + AT_rich Low_complexity Low_complexity 1 66 0 46 54 0 0 chr4 85487693 85487767 -98800895 + AT_rich Low_complexity Low_complexity 1 74 0 2355 99 3 0 chr4 85487877 85488189 -98800473 - AluSp SINE Alu 0 313 1 1966 107 46 4 chr4 85490194 85490474 -98798188 - AluY SINE Alu -19 292 1 233 169 15 31 chr4 85490825 85490890 -98797772 - L1MA4 LINE L1 -1 6299 6236 * 442 143 49 13 chr4 85490876 85490972 -98797690 + L1M2 LINE L1 5680 5772 -399 180 111 0 0 chr4 85491927 85491954 -98796708 + (T)n Simple_repeat Simple_repeat 1 27 0 296 217 87 0 chr4 85491996 85492065 -98796597 + L2 LINE L2 3198 3272 0 401 263 195 14 chr4 85493565 85493748 -98794914 - MIR SINE MIR 0 262 49 187 283 0 17 chr4 85494291 85494351 -98794311 + L2 LINE L2 3249 3307 -6 440 286 157 11 chr4 85494932 85495117 -98793545 - MIR SINE MIR -8 254 43 203 362 87 8 chr4 85495981 85496108 -98792554 - L2 LINE L2 0 3272 3136 2310 75 10 7 chr4 85496546 85496841 -98791821 - AluSc SINE Alu -13 296 1 1392 142 0 19 chr4 85497372 85497583 -98791079 + AluSg/x SINE Alu 87 293 -19 22 0 0 0 chr4 85498491 85498513 -98790149 + AT_rich Low_complexity Low_complexity 1 22 0 3270 202 14 53 chr4 85499396 85499730 -98788932 - L1MA9 LINE L1 -24 6288 5943 2160 123 3 0 chr4 85499730 85500031 -98788631 - AluSq SINE Alu -11 302 1 3270 202 14 53 chr4 85500031 85500523 -98788139 - L1MA9 LINE L1 -369 5943 5494 1519 133 16 35 chr4 85500525 85500640 -98788022 - MER2 DNA MER2_type -95 250 134 1492 116 122 66 chr4 85500640 85500959 -98787703 - MER1B DNA MER1_type 0 337 1 1519 133 16 35 chr4 85500959 85501098 -98787564 - MER2 DNA MER2_type -211 134 1 1736 154 10 7 chr4 85501490 85501783 -98786879 - AluSx SINE Alu -18 294 1 204 225 0 0 chr4 85502012 85502052 -98786610 + (CA)n Simple_repeat Simple_repeat 2 41 0 242 292 108 39 chr4 85503864 85503994 -98784668 + LTR16C LTR ERVL 349 487 -4 209 364 11 0 chr4 85504100 85504188 -98784474 + L2 LINE L2 3184 3272 0 2027 100 0 88 chr4 85504602 85504941 -98783721 - AluSg SINE Alu -1 309 1 22 0 0 0 chr4 85505224 85505246 -98783416 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr4 85505255 85505286 -98783376 + AT_rich Low_complexity Low_complexity 1 31 0 275 284 100 113 chr4 85506341 85506651 -98782011 - L2 LINE L2 -57 3215 2910 1684 181 6 0 chr4 85506654 85506992 -98781670 + L1 LINE L1 4558 4897 -1249 14675 197 11 16 chr4 85508154 85509751 -98778911 + L1PB1 LINE L1 1551 3154 -3061 2041 129 0 0 chr4 85509751 85510066 -98778596 + AluSq SINE Alu 7 321 0 14675 197 11 16 chr4 85510066 85513086 -98775576 + L1PB1 LINE L1 3154 6210 -5 24 67 0 0 chr4 85515480 85515525 -98773137 + AT_rich Low_complexity Low_complexity 1 45 0 213 154 0 0 chr4 85515862 85515901 -98772761 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 281 265 15 15 chr4 85516396 85516464 -98772198 + MIR SINE MIR 54 121 -87 26 30 0 0 chr4 85517568 85517601 -98771061 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr4 85517843 85517871 -98770791 + AT_rich Low_complexity Low_complexity 1 28 0 30 27 0 0 chr4 85518000 85518037 -98770625 + AT_rich Low_complexity Low_complexity 1 37 0 286 331 24 8 chr4 85518195 85518319 -98770343 - MIR SINE MIR -64 144 19 273 49 0 0 chr4 85518709 85518750 -98769912 + AluY SINE Alu 262 302 0 253 363 9 9 chr4 85519484 85519597 -98769065 + L2 LINE L2 3158 3270 -2 375 285 93 26 chr4 85519647 85519798 -98768864 + MLT1J2 LTR MaLR 1 161 -289 674 273 113 18 chr4 85520048 85520178 -98768484 - L1MC4 LINE L1 -7 8035 7919 345 82 0 0 chr4 85520178 85520227 -98768435 + (TG)n Simple_repeat Simple_repeat 2 50 0 674 273 113 18 chr4 85520227 85520371 -98768291 - L1MC4 LINE L1 -123 7919 7735 180 0 0 0 chr4 85523115 85523135 -98765527 + (T)n Simple_repeat Simple_repeat 1 20 0 1638 136 71 23 chr4 85523135 85523443 -98765219 - THE1C LTR MaLR -52 323 1 589 13 0 25 chr4 85523515 85523594 -98765068 - L1PA2 LINE L1 -1 6154 6078 320 260 75 48 chr4 85523936 85524082 -98764580 - MIR3 SINE MIR -7 201 52 325 0 0 0 chr4 85524404 85524440 -98764222 + (TTG)n Simple_repeat Simple_repeat 1 180 0 2169 92 0 11 chr4 85524440 85524721 -98763941 - AluSc SINE Alu -31 278 1 808 219 122 15 chr4 85525044 85525240 -98763422 - MLT1D LTR MaLR -1 504 288 466 267 28 44 chr4 85525240 85525420 -98763242 + L2 LINE L2 3137 3313 0 264 255 166 25 chr4 85525449 85525606 -98763056 + MIR SINE MIR 84 262 0 406 293 109 6 chr4 85525627 85525801 -98762861 + L2 LINE L2 3118 3309 -4 1716 168 30 20 chr4 85527449 85527747 -98760915 - AluJb SINE Alu -10 302 2 2147 118 0 0 chr4 85528094 85528383 -98760279 + AluSx SINE Alu 1 289 -23 341 274 6 34 chr4 85528977 85528995 -98759667 - L1MA10 LINE L1 -2 6332 6315 514 233 21 63 chr4 85528995 85529184 -98759478 - L1ME2 LINE L1 -7 6159 5979 789 284 113 62 chr4 85529195 85529628 -98759034 + LTR16B LTR ERVL 4 458 -6 1090 206 97 6 chr4 85529632 85529956 -98758706 - L1ME2 LINE L1 -179 5987 5627 279 236 302 0 chr4 85529957 85530063 -98758599 - MIR SINE MIR -124 138 1 1377 148 9 9 chr4 85530673 85530903 -98757759 + MER30 DNA MER1_type 1 230 0 1067 211 69 0 chr4 85530911 85531214 -98757448 - MER33 DNA MER1_type 0 324 1 765 279 62 90 chr4 85532761 85532847 -98755815 + LTR33 LTR ERVL 1 88 -433 581 176 176 75 chr4 85532847 85533046 -98755616 - MER20 DNA MER1_type 0 219 1 765 279 62 90 chr4 85533046 85533493 -98755169 + LTR33 LTR ERVL 88 519 -2 183 253 11 99 chr4 85533917 85534008 -98754654 - L2 LINE L2 -2 3270 3188 186 197 131 0 chr4 85534114 85534175 -98754487 + L2 LINE L2 3242 3310 -3 1779 171 38 0 chr4 85534524 85534680 -98753982 - AluSx SINE Alu -14 298 125 977 62 22 34 chr4 85534680 85534859 -98753803 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 1779 171 38 0 chr4 85534859 85534989 -98753673 - AluSx SINE Alu -187 125 1 4361 161 41 13 chr4 85534989 85535675 -98752987 - L1MC2 LINE L1 -13 6331 5615 1959 134 34 47 chr4 85535675 85536055 -98752607 + THE1C LTR MaLR 1 375 0 4361 161 41 13 chr4 85536055 85536231 -98752431 - L1MC2 LINE L1 -729 5615 5445 240 266 97 37 chr4 85536609 85536736 -98751926 + MIR SINE MIR 16 147 -65 214 191 0 0 chr4 85536773 85536815 -98751847 + (TAA)n Simple_repeat Simple_repeat 1 42 0 360 231 173 19 chr4 85536998 85537154 -98751508 - MIR SINE MIR -16 246 67 819 102 8 8 chr4 85538056 85538174 -98750488 + FLAM_C SINE Alu 1 118 -25 180 0 0 0 chr4 85538175 85538195 -98750467 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 1192 285 40 44 chr4 85540577 85541051 -98747611 - L2 LINE L2 -383 2931 2460 327 65 0 0 chr4 85541584 85541630 -98747032 + (CA)n Simple_repeat Simple_repeat 2 47 0 1384 191 8 102 chr4 85542404 85542776 -98745886 + MLT1A1 LTR MaLR 29 365 0 2141 127 0 0 chr4 85543349 85543649 -98745013 - AluSx SINE Alu -12 300 1 424 200 86 43 chr4 85544053 85544193 -98744469 + MER20 DNA MER1_type 46 191 -28 576 305 106 14 chr4 85544291 85544639 -98744023 - L1ME4a LINE L1 -206 5915 5536 183 324 111 0 chr4 85546413 85546521 -98742141 - MIR SINE MIR -56 206 87 384 311 134 19 chr4 85546576 85546732 -98741930 - MIR3 SINE MIR -30 178 6 633 196 42 119 chr4 85548289 85548549 -98740113 + L1MA9 LINE L1 6036 6275 -37 369 352 7 21 chr4 85549206 85549348 -98739314 + L2 LINE L2 3128 3267 -5 212 266 16 16 chr4 85550677 85550741 -98737921 - L2 LINE L2 -2 3270 3207 236 239 45 0 chr4 85551197 85551264 -98737398 - L1 LINE L1 -3228 2918 2849 266 328 129 38 chr4 85551719 85551905 -98736757 - MIR3 SINE MIR -2 206 4 282 265 29 73 chr4 85552298 85552434 -98736228 + MIR3 SINE MIR 56 185 -23 389 318 12 61 chr4 85553080 85553325 -98735337 - L2 LINE L2 -2 3311 3079 712 145 6 25 chr4 85553325 85553484 -98735178 + GA-rich Low_complexity Low_complexity 2 157 0 261 283 0 0 chr4 85553567 85553628 -98735034 - L2 LINE L2 -357 2915 2866 2093 129 14 0 chr4 85554923 85555087 -98733575 - AluSq SINE Alu -15 298 127 189 0 0 0 chr4 85555087 85555108 -98733554 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2093 129 14 0 chr4 85555108 85555237 -98733425 - AluSq SINE Alu -186 127 1 537 114 121 68 chr4 85555582 85555714 -98732948 + L1MA6 LINE L1 5870 6008 -292 2281 67 0 3 chr4 85555866 85556182 -98732480 - AluY SINE Alu 0 315 1 24 67 0 0 chr4 85556776 85556821 -98731841 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr4 85557303 85557324 -98731338 + AT_rich Low_complexity Low_complexity 1 21 0 319 261 11 0 chr4 85558349 85558441 -98730221 + MER103 DNA DNA 3 95 -71 321 26 0 0 chr4 85558571 85558609 -98730053 + (CA)n Simple_repeat Simple_repeat 1 38 0 476 299 15 0 chr4 85559192 85559329 -98729333 - MIR SINE MIR -121 141 3 23 78 0 0 chr4 85560037 85560088 -98728574 + AT_rich Low_complexity Low_complexity 1 51 0 360 320 63 11 chr4 85560707 85560746 -98727916 - MIR SINE MIR -10 252 216 2248 89 0 7 chr4 85560746 85561069 -98727593 + AluY SINE Alu 1 321 0 360 320 63 11 chr4 85561069 85561203 -98727459 - MIR SINE MIR -46 216 69 3350 214 33 5 chr4 85561365 85562116 -98726546 - Tigger6a DNA MER2_type -308 775 4 1882 154 3 22 chr4 85562308 85562665 -98725997 + L1MA5 LINE L1 5951 6300 0 418 163 12 0 chr4 85562666 85562746 -98725916 + L1MA9 LINE L1 5594 5674 -630 368 186 0 0 chr4 85562764 85562823 -98725839 + AluJo SINE Alu 8 66 -236 * 1014 171 53 18 chr4 85562817 85563045 -98725617 - Tigger6 DNA MER2_type -154 1443 1208 1412 165 9 4 chr4 85563046 85563276 -98725386 + AluJo SINE Alu 73 303 -9 1714 228 54 36 chr4 85563276 85563834 -98724828 + L1MA9 LINE L1 5715 6282 -30 2171 114 3 19 chr4 85563853 85564161 -98724501 + AluSg SINE Alu 1 303 -7 27 0 0 0 chr4 85564186 85564213 -98724449 + AT_rich Low_complexity Low_complexity 1 27 0 327 305 37 53 chr4 85565244 85565419 -98723243 - MIR SINE MIR -78 184 11 701 250 91 14 chr4 85565419 85565558 -98723104 + MER58A DNA MER1_type 1 163 -2257 1840 148 0 20 chr4 85565558 85565863 -98722799 - AluJb SINE Alu -13 299 1 701 250 91 14 chr4 85565863 85565931 -98722731 + MER58A DNA MER1_type 163 224 0 327 305 37 53 chr4 85565931 85565942 -98722720 - MIR SINE MIR -251 11 1 938 158 0 35 chr4 85566379 85566550 -98722112 + FRAM SINE Alu 8 172 -4 23 0 0 0 chr4 85568877 85568900 -98719762 + AT_rich Low_complexity Low_complexity 1 23 0 234 105 0 0 chr4 85569249 85569287 -98719375 + (TCC)n Simple_repeat Simple_repeat 2 39 0 22 35 0 0 chr4 85570498 85570527 -98718135 + AT_rich Low_complexity Low_complexity 1 29 0 192 300 118 9 chr4 85570837 85570947 -98717715 + MIR3 SINE MIR 46 167 -41 463 241 34 79 chr4 85570958 85571223 -98717439 - L1MC5 LINE L1 -36 7925 7673 493 258 26 13 chr4 85571228 85571379 -98717283 - L1ME2 LINE L1 0 6164 6012 475 221 21 43 chr4 85571385 85571525 -98717137 - L1ME2 LINE L1 -220 5944 5808 303 262 49 23 chr4 85571835 85571970 -98716692 - MIR SINE MIR -61 201 59 430 277 87 5 chr4 85573552 85573736 -98714926 + MIR SINE MIR 64 262 0 2183 132 0 0 chr4 85574559 85574870 -98713792 + AluSx SINE Alu 1 311 -1 25 31 0 0 chr4 85575089 85575121 -98713541 + AT_rich Low_complexity Low_complexity 1 32 0 183 305 51 0 chr4 85575425 85575484 -98713178 + L3b LINE CR1 1357 1418 -165 415 208 62 0 chr4 85576192 85576288 -98712374 + L1ME LINE L1 5560 5661 -460 1637 154 23 0 chr4 85577531 85577791 -98710871 + MLT1B LTR MaLR 125 390 0 24 0 0 0 chr4 85577836 85577860 -98710802 + AT_rich Low_complexity Low_complexity 1 24 0 198 0 0 0 chr4 85578108 85578130 -98710532 + (TG)n Simple_repeat Simple_repeat 2 23 0 366 23 0 0 chr4 85578144 85578187 -98710475 + (GA)n Simple_repeat Simple_repeat 2 44 0 1350 177 99 8 chr4 85579450 85579886 -98708776 - LTR54 LTR ERV1 -2 496 1 1673 194 0 10 chr4 85580179 85580488 -98708174 + AluJb SINE Alu 1 306 -6 28 29 0 0 chr4 85580693 85580728 -98707934 + AT_rich Low_complexity Low_complexity 1 35 0 684 291 197 26 chr4 85581061 85581357 -98707305 + LTR50 LTR ERVL 1 245 -550 2179 122 33 22 chr4 85581357 85581717 -98706945 - THE1B LTR MaLR 0 364 1 11289 99 6 6 chr4 85581717 85583297 -98705365 - THE1B-int LTR MaLR 0 1580 1 2410 96 19 30 chr4 85583297 85583663 -98704999 - THE1B LTR MaLR 0 364 3 684 291 197 26 chr4 85583663 85583831 -98704831 + LTR50 LTR ERVL 244 547 -248 274 319 57 21 chr4 85583852 85583993 -98704669 + LTR50 LTR ERVL 502 647 -148 2151 107 3 7 chr4 85585271 85585571 -98703091 - AluSp SINE Alu -14 299 1 2268 165 28 25 chr4 85586534 85586965 -98701697 - MSTB1 LTR MaLR 0 432 1 1262 221 42 80 chr4 85587656 85588082 -98700580 + MER47B DNA MER2_type 9 418 0 6467 131 4 0 chr4 85588218 85589189 -98699473 + L1P LINE L1 1 975 -5171 7191 52 1 0 chr4 85589189 85590591 -98698071 + L1PA5 LINE L1 4742 6146 -8 26 30 0 0 chr4 85590681 85590714 -98697948 + AT_rich Low_complexity Low_complexity 1 33 0 385 272 15 37 chr4 85590923 85591059 -98697603 + MER94 DNA DNA 2 134 0 303 254 0 0 chr4 85591718 85591789 -98696873 + L1MCa LINE L1 1994 2064 -4362 205 298 18 0 chr4 85591874 85591931 -98696731 + L2 LINE L2 3206 3263 -9 197 268 0 18 chr4 85592046 85592102 -98696560 - L2 LINE L2 -289 2983 2929 484 198 0 10 chr4 85592626 85592722 -98695940 - MER5A DNA MER1_type -94 95 1 22 56 0 0 chr4 85592776 85592812 -98695850 + AT_rich Low_complexity Low_complexity 1 36 0 22 94 0 0 chr4 85592824 85592888 -98695774 + AT_rich Low_complexity Low_complexity 1 64 0 205 77 51 26 chr4 85593090 85593129 -98695533 + (TTAA)n Simple_repeat Simple_repeat 1 40 0 2461 130 104 9 chr4 85594004 85594436 -98694226 - MER101 LTR ERV1 0 474 2 415 281 65 7 chr4 85596097 85596236 -98692426 - L1MD3 LINE L1 -9 7986 7840 297 0 0 0 chr4 85596912 85596945 -98691717 + (GA)n Simple_repeat Simple_repeat 1 33 0 1112 268 53 43 chr4 85597058 85597473 -98691189 + MLT1J LTR MaLR 85 503 -8 923 70 78 0 chr4 85597722 85597851 -98690811 + MER30 DNA MER1_type 1 139 -91 6812 62 19 0 chr4 85597922 85598593 -98690069 - L1PA7 LINE L1 -1 6153 5496 2199 88 0 26 chr4 85598593 85598899 -98689763 - AluY SINE Alu -13 298 1 6812 62 19 0 chr4 85598899 85599742 -98688920 - L1PA7 LINE L1 -658 5496 4634 449 74 333 0 chr4 85599743 85599824 -98688838 + MER30 DNA MER1_type 123 230 0 21 36 0 0 chr4 85601834 85601862 -98686800 + AT_rich Low_complexity Low_complexity 1 28 0 425 76 0 15 chr4 85601976 85602042 -98686620 + LTR1 LTR ERV1 721 785 0 1792 246 23 19 chr4 85602570 85603171 -98685491 + L1MCa LINE L1 2177 2738 -3688 1941 231 49 8 chr4 85603171 85603683 -98684979 - MLT1E3 LTR MaLR 0 624 6 1299 235 34 8 chr4 85603689 85604046 -98684616 + L1MCa LINE L1 2735 3100 -3326 233 233 0 133 chr4 85604059 85604149 -98684513 - MER63 DNA MER1_type -307 754 677 345 115 4 21 chr4 85604695 85604763 -98683899 - AluS SINE Alu -210 92 44 659 283 22 98 chr4 85605295 85605406 -98683256 - L2 LINE L2 -56 3257 3139 1438 143 154 0 chr4 85605406 85605665 -98682997 + AluSx SINE Alu 1 299 -3 659 283 22 98 chr4 85605665 85605920 -98682742 - L2 LINE L2 -174 3139 2919 493 291 121 22 chr4 85606042 85606365 -98682297 - L1MC5 LINE L1 -53 7908 7554 27 49 0 0 chr4 85606431 85606472 -98682190 + AT_rich Low_complexity Low_complexity 1 41 0 235 364 140 7 chr4 85607845 85607988 -98680674 - MIR SINE MIR -5 257 96 488 323 154 37 chr4 85608384 85608947 -98679715 - L2 LINE L2 -3 3310 2682 2082 118 0 3 chr4 85608992 85609288 -98679374 + AluSq SINE Alu 1 295 -18 229 255 157 20 chr4 85609336 85609438 -98679224 - L2 LINE L2 -3 3310 3195 198 113 38 19 chr4 85609701 85609754 -98678908 + (TA)n Simple_repeat Simple_repeat 1 54 0 40 59 0 0 chr4 85609976 85610044 -98678618 + AT_rich Low_complexity Low_complexity 1 68 0 216 271 129 12 chr4 85610782 85610867 -98677795 - L2 LINE L2 -8 3264 3170 202 261 87 43 chr4 85611842 85611934 -98676728 + L3 LINE CR1 367 462 -1115 330 358 121 14 chr4 85612287 85612494 -98676168 + MIR SINE MIR 16 244 -18 199 287 43 32 chr4 85612862 85612956 -98675706 - MIR SINE MIR -70 138 44 25 51 0 0 chr4 85613646 85613685 -98674977 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr4 85614385 85614407 -98674255 + AT_rich Low_complexity Low_complexity 1 22 0 3992 264 62 47 chr4 85614836 85616673 -98671989 - L1ME2 LINE L1 -3 6397 4490 954 189 0 6 chr4 85616673 85616848 -98671814 - FAM SINE Alu -1 174 1 3992 264 62 47 chr4 85616848 85618094 -98670568 - L1ME2 LINE L1 -1910 4490 3264 22 0 0 0 chr4 85618094 85618116 -98670546 + AT_rich Low_complexity Low_complexity 1 22 0 788 174 0 21 chr4 85618134 85618278 -98670384 - FLAM_C SINE Alu -2 141 1 1333 256 62 0 chr4 85618321 85618790 -98669872 - L1ME2 LINE L1 -3174 3208 2711 2079 163 8 5 chr4 85618801 85619199 -98669463 - L1MA4 LINE L1 0 6300 5902 2370 127 26 0 chr4 85619215 85619600 -98669062 + L1 LINE L1 4465 4859 -1287 495 268 14 33 chr4 85619756 85619969 -98668693 - L1ME2 LINE L1 -4329 2234 2026 23 33 0 0 chr4 85619969 85619999 -98668663 + AT_rich Low_complexity Low_complexity 1 30 0 306 312 28 9 chr4 85620023 85620132 -98668530 - L1ME2 LINE L1 -5093 1291 1181 725 306 32 23 chr4 85620194 85620540 -98668122 - L1MDb LINE L1 -4583 2539 2191 558 270 70 16 chr4 85620559 85621210 -98667452 - L1MDb LINE L1 -4887 1536 1178 2530 197 28 6 chr4 85621381 85621889 -98666773 + LTR53 LTR ERVL 1 519 0 1803 223 50 53 chr4 85622167 85622691 -98665971 - L1MDb LINE L1 -6001 940 419 195 274 59 0 chr4 85623460 85623511 -98665151 - L2 LINE L2 -1 3271 3218 * 337 311 83 0 chr4 85623506 85623638 -98665024 + MIR SINE MIR 49 191 -71 181 344 104 10 chr4 85625775 85625871 -98662791 + L2 LINE L2 3168 3272 0 234 91 0 0 chr4 85625873 85625906 -98662756 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 351 309 42 79 chr4 85628133 85628349 -98660313 + MIR SINE MIR 42 247 -15 21 36 0 0 chr4 85628418 85628446 -98660216 + AT_rich Low_complexity Low_complexity 1 28 0 184 269 0 60 chr4 85628767 85628834 -98659828 - L2 LINE L2 -29 3243 3181 2310 89 0 3 chr4 85629302 85629595 -98659067 - AluSc SINE Alu -17 292 1 268 286 22 22 chr4 85629802 85629893 -98658769 - L2 LINE L2 -8 3305 3215 570 305 109 21 chr4 85630293 85630532 -98658130 - MIR SINE MIR 0 262 3 211 296 19 0 chr4 85630994 85631048 -98657614 + L2 LINE L2 3203 3257 -15 450 300 15 8 chr4 85631430 85631560 -98657102 - L2 LINE L2 0 3272 3142 391 335 219 4 chr4 85631769 85632038 -98656624 + L2 LINE L2 2393 2719 -595 314 206 273 0 chr4 85632040 85632234 -98656428 - HsTC2 DNA Tc2 0 1898 1652 * 357 212 81 71 chr4 85632233 85632332 -98656330 - HsTC2 DNA Tc2 -1764 134 35 922 308 82 17 chr4 85632379 85632794 -98655868 + L2 LINE L2 2864 3305 -8 752 296 96 12 chr4 85632804 85633139 -98655523 - L2 LINE L2 -1029 2285 1923 25 31 0 0 chr4 85633973 85634005 -98654657 + AT_rich Low_complexity Low_complexity 1 32 0 1707 20 0 0 chr4 85634227 85634426 -98654236 + L1PA2 LINE L1 5956 6154 -1 26 30 0 0 chr4 85634907 85634940 -98653722 + AT_rich Low_complexity Low_complexity 1 33 0 396 281 144 19 chr4 85635714 85635874 -98652788 - MIR SINE MIR -50 212 33 203 286 24 24 chr4 85636180 85636264 -98652398 + CT-rich Low_complexity Low_complexity 2 85 0 2183 166 100 3 chr4 85636353 85636713 -98651949 - L1MB3 LINE L1 -3 6180 5772 228 86 0 0 chr4 85636713 85636748 -98651914 + (TG)n Simple_repeat Simple_repeat 1 35 0 2183 166 100 3 chr4 85636748 85636830 -98651832 - L1MB3 LINE L1 -411 5772 5699 21 36 0 0 chr4 85638770 85638798 -98649864 + AT_rich Low_complexity Low_complexity 1 28 0 276 27 27 0 chr4 85639456 85639493 -98649169 - L1MA7 LINE L1 -71 6220 6183 430 244 219 11 chr4 85639496 85639852 -98648810 - L1MEc LINE L1 -4946 1450 1021 322 244 35 107 chr4 85639858 85640055 -98648607 - L1MEc LINE L1 -5316 889 707 414 365 77 20 chr4 85640068 85640460 -98648202 - L1MEc LINE L1 -5965 431 18 279 275 143 29 chr4 85640531 85640775 -98647887 - L1 LINE L1 -1558 4588 4317 400 323 8 0 chr4 85641622 85641746 -98646916 + MIR SINE MIR 137 261 -1 518 311 31 0 chr4 85643059 85643220 -98645442 + MIR SINE MIR 39 204 -58 195 100 0 0 chr4 85643449 85643479 -98645183 + (TC)n Simple_repeat Simple_repeat 1 30 0 21 36 0 0 chr4 85645125 85645153 -98643509 + AT_rich Low_complexity Low_complexity 1 28 0 225 65 0 0 chr4 85649181 85649212 -98639450 + (TG)n Simple_repeat Simple_repeat 1 31 0 24 67 0 0 chr4 85650236 85650281 -98638381 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr4 85650580 85650603 -98638059 + AT_rich Low_complexity Low_complexity 1 23 0 208 265 0 9 chr4 85650610 85650681 -98637981 + CT-rich Low_complexity Low_complexity 1 70 0 35 63 0 0 chr4 85651262 85651325 -98637337 + AT_rich Low_complexity Low_complexity 1 63 0 32 26 0 0 chr4 85651645 85651684 -98636978 + AT_rich Low_complexity Low_complexity 1 39 0 186 302 0 0 chr4 85652854 85652897 -98635765 - MER5B DNA MER1_type -5 173 131 468 289 10 0 chr4 85653378 85653482 -98635180 - MER5A DNA MER1_type -84 105 1 2012 120 7 13 chr4 85654161 85654189 -98634473 - AluSx SINE Alu -6 306 279 252 0 0 0 chr4 85654189 85654217 -98634445 + (ATTG)n Simple_repeat Simple_repeat 1 28 0 2012 120 7 13 chr4 85654217 85654496 -98634166 - AluSx SINE Alu -33 279 1 48 46 0 11 chr4 85656602 85656653 -98632009 + AT_rich Low_complexity Low_complexity 1 52 -34 2007 124 7 3 chr4 85656653 85656943 -98631719 + AluSc SINE Alu 1 291 -18 48 46 0 11 chr4 85656943 85656978 -98631684 + AT_rich Low_complexity Low_complexity 52 86 0 1553 93 68 8 chr4 85656979 85657227 -98631435 - L1MA2 LINE L1 0 6304 6042 198 0 0 0 chr4 85657227 85657249 -98631413 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1401 169 29 43 chr4 85657252 85657531 -98631131 - AluJb SINE Alu -30 282 8 64 14 0 0 chr4 85657560 85657631 -98631031 + AT_rich Low_complexity Low_complexity 1 71 0 1535 121 0 0 chr4 85657640 85657855 -98630807 + AluSc SINE Alu 1 215 -94 6685 157 24 8 chr4 85657855 85659840 -98628822 - L1MA2 LINE L1 -271 6033 4017 27 29 0 0 chr4 85660536 85660570 -98628092 + AT_rich Low_complexity Low_complexity 1 34 0 953 213 152 22 chr4 85660620 85661027 -98627635 - MLT1D LTR MaLR -157 469 1 2460 124 6 6 chr4 85663612 85663976 -98624686 - THE1B LTR MaLR 0 364 1 9781 120 39 30 chr4 85663976 85665536 -98623126 - THE1B-int LTR MaLR 0 1580 7 2211 128 28 14 chr4 85665559 85665918 -98622744 - THE1B LTR MaLR 0 364 1 22 35 0 0 chr4 85666331 85666360 -98622302 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr4 85666737 85666766 -98621896 + AT_rich Low_complexity Low_complexity 1 29 0 202 319 0 0 chr4 85669255 85669302 -98619360 + L2 LINE L2 3261 3307 -6 366 306 58 52 chr4 85669594 85669767 -98618895 + MIR3 SINE MIR 3 176 -32 353 39 20 0 chr4 85670569 85670620 -98618042 + (TA)n Simple_repeat Simple_repeat 2 53 0 618 272 103 22 chr4 85671544 85671768 -98616894 - MIR SINE MIR -13 249 8 403 325 88 6 chr4 85672651 85672811 -98615851 + MIR SINE MIR 15 187 -75 1736 256 44 40 chr4 85673335 85673862 -98614800 - MER68 LTR ERV1 -31 531 3 1981 122 28 0 chr4 85675800 85676087 -98612575 + AluSx SINE Alu 1 295 -17 587 276 82 16 chr4 85676241 85676484 -98612178 - L1ME LINE L1 -345 5776 5518 25 0 0 0 chr4 85676549 85676574 -98612088 + AT_rich Low_complexity Low_complexity 1 25 0 249 208 0 0 chr4 85676607 85676660 -98612002 - L1ME LINE L1 -760 5482 5430 2516 250 80 15 chr4 85676953 85677721 -98610941 - L1ME1 LINE L1 -9 6157 5350 201 261 11 33 chr4 85678506 85678598 -98610064 + A-rich Low_complexity Low_complexity 3 92 0 227 315 89 41 chr4 85678622 85678768 -98609894 - L2 LINE L2 0 3313 3161 2095 132 7 0 chr4 85679096 85679400 -98609262 + AluSx SINE Alu 3 308 -4 255 287 59 52 chr4 85679531 85679667 -98608995 - L2 LINE L2 0 3272 3136 432 329 119 74 chr4 85679907 85679942 -98608720 + L3 LINE CR1 488 520 -1057 2312 103 3 0 chr4 85679942 85680244 -98608418 - AluSx SINE Alu -9 303 1 432 329 119 74 chr4 85680244 85680789 -98607873 + L3 LINE CR1 520 1094 -483 491 306 68 44 chr4 85682264 85682692 -98605970 - L1ME4a LINE L1 -296 5825 5388 29 0 0 0 chr4 85682803 85682832 -98605830 + AT_rich Low_complexity Low_complexity 1 29 0 755 168 0 0 chr4 85682832 85682951 -98605711 - FLAM_C SINE Alu -14 119 1 305 296 210 35 chr4 85682991 85683147 -98605515 - L1ME4a LINE L1 -865 5281 5154 231 88 0 0 chr4 85683147 85683181 -98605481 + (CTTTG)n Simple_repeat Simple_repeat 1 34 0 305 296 210 35 chr4 85683181 85683429 -98605233 - L1ME4a LINE L1 -992 5154 4806 208 256 0 110 chr4 85684825 85684907 -98603755 - MIR SINE MIR -93 169 97 543 254 129 22 chr4 85686290 85686517 -98602145 - MIR SINE MIR -2 260 19 332 225 45 0 chr4 85686532 85686621 -98602041 - L1ME LINE L1 -334 5787 5695 25 0 0 0 chr4 85686682 85686707 -98601955 + AT_rich Low_complexity Low_complexity 1 25 0 260 250 28 148 chr4 85686719 85686895 -98601767 - MIR SINE MIR -49 213 59 545 260 7 7 chr4 85687076 85687222 -98601440 + L1ME LINE L1 5657 5802 -364 271 349 59 20 chr4 85687262 85687414 -98601248 - LTR16A LTR ERVL -145 305 148 1877 161 135 5 chr4 85687437 85687816 -98600846 - MSTA LTR MaLR 0 428 1 25 51 0 0 chr4 85687906 85687945 -98600717 + AT_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chr4 85688160 85688196 -98600466 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr4 85688609 85688646 -98600016 + AT_rich Low_complexity Low_complexity 1 37 0 995 181 15 49 chr4 85689587 85689792 -98598870 - MLT1A1 LTR MaLR -6 359 162 810 148 29 115 chr4 85689829 85690038 -98598624 - MLT1A1 LTR MaLR -183 191 1 741 167 8 8 chr4 85691983 85692109 -98596553 + MER49 LTR ERV1 10 135 -788 1863 192 107 111 chr4 85692109 85692938 -98595724 - LTR1B LTR ERV1 0 826 1 4386 136 45 31 chr4 85692938 85693718 -98594944 + MER49 LTR ERV1 132 922 -1 21 57 0 0 chr4 85693915 85693950 -98594712 + AT_rich Low_complexity Low_complexity 1 35 0 222 271 0 0 chr4 85694097 85694182 -98594480 + GA-rich Low_complexity Low_complexity 3 87 0 2047 125 48 6 chr4 85694195 85694531 -98594131 - Tigger2 DNA MER2_type -37 2681 2332 679 178 0 0 chr4 85694551 85694669 -98593993 + AluJb SINE Alu 1 118 -194 411 148 0 3 chr4 85694685 85694754 -98593908 - Tigger2 DNA MER2_type -2656 62 1 4779 91 7 10 chr4 85695056 85695740 -98592922 + L1PA11 LINE L1 5490 6171 -3 4474 74 88 19 chr4 85695766 85695931 -98592731 - LTR8 LTR ERV1 0 691 539 2248 86 10 13 chr4 85695931 85696232 -98592430 - AluSc SINE Alu -9 300 1 4474 74 88 19 chr4 85696232 85696712 -98591950 - LTR8 LTR ERV1 -152 539 1 2514 90 119 5 chr4 85696885 85697287 -98591375 - LTR7 LTR ERV1 -2 448 1 2289 103 47 16 chr4 85697287 85697667 -98590995 - HERVH LTR ERV1 0 7713 7322 1342 139 19 0 chr4 85697665 85697881 -98590781 - HERVH LTR ERV1 -1894 5819 5600 * 4323 148 5 1 chr4 85697882 85698552 -98590110 - HERVH LTR ERV1 -2564 5149 4478 3359 100 4 18 chr4 85698548 85699057 -98589605 - HERVH LTR ERV1 -3720 3993 3492 * 881 132 21 0 chr4 85699080 85699224 -98589438 - HERVH LTR ERV1 -4427 3286 3140 * 20177 89 24 12 chr4 85699218 85702169 -98586493 - HERVH LTR ERV1 -4726 2987 1 1955 86 282 6 chr4 85702171 85702522 -98586140 - LTR7 LTR ERV1 -2 448 1 347 225 6 26 chr4 85703686 85703873 -98584789 + CT-rich Low_complexity Low_complexity 1 183 0 26 0 0 0 chr4 85705101 85705127 -98583535 + AT_rich Low_complexity Low_complexity 1 26 0 523 303 7 7 chr4 85705493 85705648 -98583014 + MIR SINE MIR 103 257 -5 619 279 88 37 chr4 85706572 85706707 -98581955 + MIR SINE MIR 9 160 -102 13765 136 19 43 chr4 85706707 85709183 -98579479 - Tigger1 DNA MER2_type -1 2417 1 619 279 88 37 chr4 85709183 85709262 -98579400 + MIR SINE MIR 160 234 -28 2108 140 3 0 chr4 85710062 85710384 -98578278 + MER49 LTR ERV1 1 323 -600 2857 133 2 13 chr4 85710390 85710856 -98577806 + LTR44 LTR ERV1 53 513 -6 243 302 0 0 chr4 85711047 85711110 -98577552 + MIR SINE MIR 172 234 -28 34 0 0 0 chr4 85711212 85711246 -98577416 + AT_rich Low_complexity Low_complexity 1 34 0 2069 108 3 35 chr4 85711556 85711872 -98576790 - AluSg SINE Alu -4 306 1 1677 128 50 137 chr4 85713122 85713545 -98575117 + MLT1B LTR MaLR 1 386 -4 220 219 47 31 chr4 85714820 85714884 -98573778 - MIR SINE MIR -93 169 105 438 307 24 22 chr4 85715217 85715550 -98573112 + L1ME LINE L1 5185 5526 -644 1712 167 0 42 chr4 85715584 85715731 -98572931 + AluJb SINE Alu 1 130 -182 377 23 0 0 chr4 85715731 85715774 -98572888 + (TA)n Simple_repeat Simple_repeat 1 43 0 1712 167 0 42 chr4 85715774 85715937 -98572725 + AluJb SINE Alu 130 298 -14 2313 97 7 0 chr4 85716301 85716609 -98572053 - AluSg SINE Alu 0 310 1 21 82 0 0 chr4 85717027 85717076 -98571586 + AT_rich Low_complexity Low_complexity 1 49 0 310 274 64 76 chr4 85717185 85717312 -98571350 + MIR3 SINE MIR 42 168 -40 1471 234 70 31 chr4 85717312 85717796 -98570866 + MLT1D LTR MaLR 1 503 -2 310 274 64 76 chr4 85717796 85717825 -98570837 + MIR3 SINE MIR 168 196 -12 1178 336 123 24 chr4 85718048 85719114 -98569548 + L2 LINE L2 2075 3242 -71 1630 275 157 31 chr4 85719185 85720066 -98568596 - HAL1 LINE L1 -170 2337 1346 7549 132 57 0 chr4 85720282 85721547 -98567115 - L1M1 LINE L1 -4525 3040 1704 2477 54 0 0 chr4 85721930 85722224 -98566438 - AluY SINE Alu -17 294 1 1182 275 59 48 chr4 85723665 85724012 -98564650 + LTR16A LTR ERVL 6 361 -89 1498 209 64 12 chr4 85724012 85724357 -98564305 + MLT1A1 LTR MaLR 1 363 -2 1182 275 59 48 chr4 85724357 85724449 -98564213 + LTR16A LTR ERVL 361 450 0 1639 213 123 20 chr4 85725116 85725571 -98563091 + MER34 LTR ERV1 41 542 0 26 0 0 0 chr4 85725854 85725880 -98562782 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr4 85726013 85726034 -98562628 + AT_rich Low_complexity Low_complexity 1 21 0 204 320 157 66 chr4 85726082 85726279 -98562383 - L2 LINE L2 -9 3263 3049 327 113 0 0 chr4 85726464 85726517 -98562145 + (TG)n Simple_repeat Simple_repeat 2 54 0 3345 127 37 4 chr4 85726532 85727076 -98561586 - MER34B LTR ERV1 -3 562 1 193 330 57 38 chr4 85727082 85727188 -98561474 - L2 LINE L2 -471 2843 2736 753 113 61 0 chr4 85727424 85727539 -98561123 + AluJb SINE Alu 162 283 -29 261 0 0 0 chr4 85731643 85731672 -98556990 + (CA)n Simple_repeat Simple_repeat 2 30 0 2066 129 3 0 chr4 85732406 85732701 -98555961 - AluSg SINE Alu -14 296 1 1777 154 39 0 chr4 85732712 85732991 -98555671 - AluY SINE Alu -21 290 1 258 133 0 67 chr4 85733456 85733531 -98555131 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 25 31 0 0 chr4 85736278 85736310 -98552352 + AT_rich Low_complexity Low_complexity 1 32 0 216 333 0 0 chr4 85736935 85736995 -98551667 + L2 LINE L2 2594 2653 -661 963 292 95 43 chr4 85737308 85737408 -98551254 - L2 LINE L2 -1 3312 3219 2575 0 0 0 chr4 85737408 85737683 -98550979 + AluYa5 SINE Alu 37 311 0 963 292 95 43 chr4 85737683 85738142 -98550520 - L2 LINE L2 -94 3219 2746 624 342 33 23 chr4 85738277 85738578 -98550084 + L2 LINE L2 2974 3277 -36 465 150 30 80 chr4 85738668 85738768 -98549894 + MLT1A2 LTR MaLR 2 96 -278 229 270 16 0 chr4 85738768 85738831 -98549831 - MLT1H LTR MaLR -227 322 259 26 0 0 0 chr4 85739188 85739214 -98549448 + AT_rich Low_complexity Low_complexity 1 26 0 335 319 65 0 chr4 85739256 85739394 -98549268 - MIR SINE MIR -30 232 86 1105 181 5 0 chr4 85739486 85739685 -98548977 + L1PB1 LINE L1 1 200 -6663 14406 150 58 9 chr4 85739693 85743431 -98545231 + L1PB1 LINE L1 633 4189 -2678 1831 164 11 0 chr4 85743431 85743705 -98544957 + AluSx SINE Alu 1 277 -35 291 71 0 0 chr4 85743709 85743751 -98544911 + (CAA)n Simple_repeat Simple_repeat 1 42 0 14406 150 58 9 chr4 85743751 85745401 -98543261 + L1PB1 LINE L1 4191 6341 -526 2190 108 0 3 chr4 85745401 85745697 -98542965 + AluSx SINE Alu 1 295 -17 14406 150 58 9 chr4 85745697 85746191 -98542471 + L1PB1 LINE L1 6341 6810 -57 24 32 0 0 chr4 85746202 85746233 -98542429 + AT_rich Low_complexity Low_complexity 1 31 0 690 247 139 3 chr4 85746567 85746760 -98541902 - MLT1D LTR MaLR -47 458 216 214 203 0 17 chr4 85746919 85746978 -98541684 + A-rich Low_complexity Low_complexity 1 58 0 685 327 110 34 chr4 85747335 85747835 -98540827 - L2 LINE L2 -4 3309 2777 2155 124 0 3 chr4 85747974 85748273 -98540389 - AluSx SINE Alu -14 298 1 316 354 15 8 chr4 85748334 85748464 -98540198 + L2 LINE L2 3179 3309 -4 1991 157 15 33 chr4 85748700 85749095 -98539567 + MLT1B LTR MaLR 1 388 -2 487 162 0 0 chr4 85749115 85749189 -98539473 + L1MCa LINE L1 19 92 -6334 * 3743 154 123 28 chr4 85749168 85750887 -98537775 + L1MCa LINE L1 701 2681 -3745 195 303 156 18 chr4 85750967 85751076 -98537586 - MIR3 SINE MIR -11 197 74 25 31 0 0 chr4 85751243 85751275 -98537387 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr4 85752060 85752089 -98536573 + AT_rich Low_complexity Low_complexity 1 29 0 26 58 0 29 chr4 85753362 85753403 -98535259 + AT_rich Low_complexity Low_complexity 1 41 -26 1748 147 27 7 chr4 85753403 85753695 -98534967 + AluSx SINE Alu 1 298 -14 26 58 0 29 chr4 85753695 85753722 -98534940 + AT_rich Low_complexity Low_complexity 41 67 0 22 35 0 0 chr4 85755062 85755091 -98533571 + AT_rich Low_complexity Low_complexity 1 29 0 228 342 51 8 chr4 85755253 85755370 -98533292 + MIR3 SINE MIR 47 168 -40 2130 165 35 31 chr4 85755467 85756014 -98532648 - MLT2A2 LTR ERVL 0 554 1 25 31 0 0 chr4 85756395 85756427 -98532235 + AT_rich Low_complexity Low_complexity 1 32 0 180 0 0 0 chr4 85756574 85756594 -98532068 + (T)n Simple_repeat Simple_repeat 1 20 0 305 261 0 65 chr4 85756615 85756707 -98531955 + MIR3 SINE MIR 108 193 -15 220 401 21 14 chr4 85756743 85756885 -98531777 - L3 LINE CR1 -873 704 562 228 200 18 36 chr4 85759331 85759386 -98529276 + CT-rich Low_complexity Low_complexity 1 54 0 23 0 0 0 chr4 85760090 85760113 -98528549 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr4 85761306 85761328 -98527334 + AT_rich Low_complexity Low_complexity 1 22 0 639 302 23 0 chr4 85761664 85761836 -98526826 - MIR SINE MIR -16 246 71 22 35 0 0 chr4 85762064 85762093 -98526569 + AT_rich Low_complexity Low_complexity 1 29 0 561 224 204 7 chr4 85762296 85762443 -98526219 - MER45A DNA AcHobo -2 176 1 262 295 0 26 chr4 85762910 85762988 -98525674 + L3 LINE CR1 1500 1575 -2 319 328 0 48 chr4 85763623 85763748 -98524914 + MIR SINE MIR 19 137 -125 1974 188 20 0 chr4 85763812 85764168 -98524494 + MLT1A1 LTR MaLR 1 363 -2 625 239 44 6 chr4 85764409 85764568 -98524094 - MER58A DNA MER1_type -12 212 48 3796 194 70 16 chr4 85764641 85765459 -98523203 - MER21B LTR ERV1 -1 862 1 5065 79 16 3 chr4 85765767 85766466 -98522196 - L1P3 LINE L1 -1507 4639 3932 * 5244 83 10 2 chr4 85766451 85767518 -98521144 + L1P3 LINE L1 4620 5692 -462 375 287 17 29 chr4 85768088 85768262 -98520400 + GA-rich Low_complexity Low_complexity 3 174 0 21 36 0 0 chr4 85769064 85769092 -98519570 + AT_rich Low_complexity Low_complexity 1 28 0 4992 155 32 2 chr4 85769441 85770285 -98518377 - L1P LINE L1 -5240 906 38 384 301 38 54 chr4 85770386 85770572 -98518090 - MER57A LTR ERV1 -163 240 58 264 91 0 0 chr4 85770609 85770653 -98518009 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 2280 80 7 0 chr4 85770655 85770943 -98517719 - AluY SINE Alu -21 290 1 22 88 0 0 chr4 85771455 85771512 -98517150 + AT_rich Low_complexity Low_complexity 1 57 0 253 209 31 0 chr4 85771706 85771869 -98516793 + (TA)n Simple_repeat Simple_repeat 2 169 0 368 172 41 0 chr4 85771907 85772076 -98516586 + (TA)n Simple_repeat Simple_repeat 1 176 0 2247 85 7 0 chr4 85772076 85772359 -98516303 - AluSc SINE Alu -24 285 1 21 0 0 0 chr4 85772679 85772700 -98515962 + AT_rich Low_complexity Low_complexity 1 21 0 942 292 163 5 chr4 85772749 85773184 -98515478 + L1MEc LINE L1 51 554 -5842 272 70 23 0 chr4 85773696 85773739 -98514923 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 4322 65 4 0 chr4 85774539 85775097 -98513565 + L1PA7 LINE L1 5595 6154 0 204 125 0 0 chr4 85776664 85776696 -98511966 + (CATA)n Simple_repeat Simple_repeat 2 33 0 217 204 0 0 chr4 85777511 85777555 -98511107 + MIR SINE MIR 218 261 -1 891 252 41 0 chr4 85777558 85777776 -98510886 - MIR SINE MIR -34 228 2 2287 120 0 0 chr4 85777927 85778236 -98510426 + AluSx SINE Alu 1 309 -3 37 0 0 0 chr4 85778256 85778293 -98510369 + AT_rich Low_complexity Low_complexity 1 37 0 3941 182 13 47 chr4 85778439 85779285 -98509377 - LTR1B LTR ERV1 -9 817 1 26 0 0 0 chr4 85779495 85779521 -98509141 + AT_rich Low_complexity Low_complexity 1 26 0 227 217 0 0 chr4 85779873 85779919 -98508743 - L2 LINE L2 -6 3307 3262 216 281 174 30 chr4 85780474 85780641 -98508021 + MIR SINE MIR 20 210 -52 21 36 0 0 chr4 85780708 85780736 -98507926 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr4 85781774 85781799 -98506863 + AT_rich Low_complexity Low_complexity 1 25 0 213 300 0 60 chr4 85782888 85782988 -98505674 + MIR SINE MIR 46 139 -123 751 236 0 0 chr4 85784102 85784263 -98504399 + FRAM SINE Alu 3 163 -3 23 0 0 0 chr4 85785617 85785640 -98503022 + AT_rich Low_complexity Low_complexity 1 23 0 201 210 0 65 chr4 85785911 85785973 -98502689 + A-rich Low_complexity Low_complexity 5 62 0 21 82 0 0 chr4 85786039 85786088 -98502574 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr4 85787690 85787718 -98500944 + AT_rich Low_complexity Low_complexity 1 28 0 343 296 40 56 chr4 85787848 85788026 -98500636 + MER20B DNA MER1_type 36 214 -5 815 259 5 5 chr4 85788242 85788431 -98500231 + MER5A DNA MER1_type 1 189 0 2470 21 0 0 chr4 85788691 85788973 -98499689 - AluYb8 SINE Alu -2 316 35 1445 253 133 30 chr4 85788973 85789539 -98499123 - MLT1E2 LTR MaLR -2 624 1 781 247 0 0 chr4 85790579 85790741 -98497921 - FRAM SINE Alu -4 162 1 23 0 0 0 chr4 85792441 85792464 -98496198 + AT_rich Low_complexity Low_complexity 1 23 0 208 246 0 35 chr4 85793407 85793464 -98495198 + CT-rich Low_complexity Low_complexity 4 58 0 1578 206 16 21 chr4 85793515 85793888 -98494774 + MLT1A2 LTR MaLR 4 374 0 213 39 0 0 chr4 85794550 85794576 -98494086 + (T)n Simple_repeat Simple_repeat 1 26 0 2444 50 17 0 chr4 85795790 85796089 -98492573 + AluY SINE Alu 1 304 -7 418 253 76 72 chr4 85796311 85796548 -98492114 - L2 LINE L2 0 3313 3076 194 343 14 0 chr4 85796710 85796783 -98491879 + L2 LINE L2 2625 2698 -616 1354 142 138 4 chr4 85797285 85797532 -98491130 + Ricksha DNA DNA 10 289 -2957 921 185 0 0 chr4 85797530 85797687 -98490975 + Ricksha DNA DNA 1821 1977 -1269 * 3485 162 12 30 chr4 85797692 85797933 -98490729 + Ricksha DNA DNA 2594 2838 -413 1469 168 52 25 chr4 85797933 85798219 -98490443 + AluJb SINE Alu 1 294 -18 3485 162 12 30 chr4 85798219 85798671 -98489991 + Ricksha DNA DNA 2838 3238 -13 24 103 0 0 chr4 85798893 85798980 -98489682 + AT_rich Low_complexity Low_complexity 1 87 0 29 70 0 0 chr4 85800290 85800347 -98488315 + AT_rich Low_complexity Low_complexity 1 57 0 537 272 174 28 chr4 85801741 85802098 -98486564 + MLT1I LTR MaLR 1 409 0 280 328 9 35 chr4 85802260 85802376 -98486286 - MIR SINE MIR -55 207 95 1843 161 0 7 chr4 85802990 85803295 -98485367 + AluJb SINE Alu 1 303 -9 24 0 0 0 chr4 85803339 85803363 -98485299 + AT_rich Low_complexity Low_complexity 1 24 0 198 71 0 0 chr4 85804851 85804879 -98483783 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 191 310 35 0 chr4 85805328 85805386 -98483276 + MIR SINE MIR 16 75 -133 1150 49 0 0 chr4 85806269 85806412 -98482250 + L1PA3 LINE L1 6013 6155 0 5999 100 17 3 chr4 85806860 85807903 -98480759 - L1PA13 LINE L1 -4 6159 5101 1157 82 7 0 chr4 85807905 85808052 -98480610 - AluSp SINE Alu -164 149 2 1324 115 9 42 chr4 85808052 85808269 -98480393 + THE1B LTR MaLR 155 364 0 473 283 141 27 chr4 85809137 85809321 -98479341 - MIR SINE MIR 0 262 58 2268 92 0 3 chr4 85811948 85812242 -98476420 + AluSg SINE Alu 1 293 -17 34 24 0 0 chr4 85812242 85812283 -98476379 + AT_rich Low_complexity Low_complexity 1 41 0 29 47 0 0 chr4 85812911 85812954 -98475708 + AT_rich Low_complexity Low_complexity 1 43 0 1572 133 76 13 chr4 85813024 85813326 -98475336 - L1MC2 LINE L1 -12 6332 6012 2130 108 0 0 chr4 85814786 85815073 -98473589 + AluSx SINE Alu 1 287 -25 181 390 0 0 chr4 85815374 85815433 -98473229 + L2 LINE L2 3205 3263 -9 1248 237 134 26 chr4 85815500 85815926 -98472736 - MLT1E1 LTR MaLR -46 608 137 21 36 0 0 chr4 85817287 85817315 -98471347 + AT_rich Low_complexity Low_complexity 1 28 0 211 336 121 9 chr4 85817591 85817707 -98470955 - MIR SINE MIR -109 153 25 344 281 110 70 chr4 85817903 85818131 -98470531 + L2 LINE L2 3076 3312 -1 367 356 81 30 chr4 85818425 85818858 -98469804 - L2 LINE L2 -490 2824 2370 651 274 16 0 chr4 85821094 85821280 -98467382 - MER5A DNA MER1_type 0 189 1 301 338 55 28 chr4 85821314 85821459 -98467203 + L2 LINE L2 1560 1708 -1606 277 294 119 40 chr4 85821775 85821901 -98466761 + MIR SINE MIR 49 184 -78 2149 115 13 0 chr4 85822234 85822539 -98466123 + AluSq SINE Alu 1 309 -4 2191 305 58 59 chr4 85822703 85824194 -98464468 - HERV16 LTR ERVL -1906 3090 1894 1195 287 45 10 chr4 85824194 85824595 -98464067 - LTR16A LTR ERVL -29 421 7 2715 165 52 14 chr4 85824756 85825314 -98463348 - L1MB4 LINE L1 -6 6174 5596 454 273 38 62 chr4 85825507 85825716 -98462946 - MIR SINE MIR -56 206 3 192 125 0 0 chr4 85825850 85825882 -98462780 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 21 36 0 0 chr4 85825902 85825930 -98462732 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr4 85826251 85826282 -98462380 + AT_rich Low_complexity Low_complexity 1 31 0 252 305 47 0 chr4 85827059 85827187 -98461475 - MER103 DNA DNA -7 159 26 21 36 0 0 chr4 85827804 85827832 -98460830 + AT_rich Low_complexity Low_complexity 1 28 0 4803 78 3 0 chr4 85827834 85828462 -98460200 - L1PA10 LINE L1 -9 6159 5530 401 324 71 22 chr4 85829516 85829698 -98458964 + MIR SINE MIR 28 218 -44 262 348 152 0 chr4 85829759 85829851 -98458811 - L2 LINE L2 -46 3226 3121 4098 160 52 44 chr4 85830473 85830697 -98457965 - L1MB4 LINE L1 -6 6174 5953 2615 149 12 2 chr4 85830697 85831120 -98457542 - MSTA LTR MaLR -1 427 1 4098 160 52 44 chr4 85831120 85831980 -98456682 - L1MB4 LINE L1 -227 5953 5080 26 0 0 0 chr4 85833221 85833247 -98455415 + AT_rich Low_complexity Low_complexity 1 26 0 213 250 0 0 chr4 85835567 85835627 -98453035 + (TA)n Simple_repeat Simple_repeat 1 60 0 2089 207 45 24 chr4 85835635 85836104 -98452558 - MLT2B1 LTR ERVL -41 479 1 301 301 50 92 chr4 85836106 85836388 -98452274 - L2 LINE L2 -33 3280 3011 1065 202 50 101 chr4 85836395 85836771 -98451891 - MLT1A1 LTR MaLR -8 357 1 700 254 197 29 chr4 85836773 85837119 -98451543 - L2 LINE L2 -299 3014 2611 226 407 44 0 chr4 85837362 85837497 -98451165 - L2 LINE L2 -9 3263 3123 654 147 0 17 chr4 85837693 85837809 -98450853 + MLT2B3 LTR ERVL 1 114 -440 192 211 0 0 chr4 85838507 85838545 -98450117 - L2 LINE L2 -3 3310 3273 191 319 96 21 chr4 85838602 85838696 -98449966 - L2 LINE L2 -186 3086 2986 530 323 105 73 chr4 85838782 85838907 -98449755 - L2 LINE L2 -338 2976 2856 1986 177 60 133 chr4 85838907 85839691 -98448971 - LTR8A LTR ERV1 0 727 1 530 323 105 73 chr4 85839691 85840287 -98448375 - L2 LINE L2 -458 2856 2232 379 182 0 0 chr4 85840491 85840557 -98448105 + MIR SINE MIR 185 250 -12 676 176 8 30 chr4 85840668 85840799 -98447863 - AluJb SINE Alu -180 132 5 21 0 0 0 chr4 85840882 85840903 -98447759 + AT_rich Low_complexity Low_complexity 1 21 0 624 305 110 8 chr4 85842049 85842285 -98446377 + MIR SINE MIR 3 262 0 193 276 158 0 chr4 85845502 85845578 -98443084 + MIR SINE MIR 100 187 -75 26 0 0 0 chr4 85845849 85845875 -98442787 + AT_rich Low_complexity Low_complexity 1 26 0 279 0 0 0 chr4 85846946 85846977 -98441685 + (TG)n Simple_repeat Simple_repeat 2 32 0 2096 139 0 7 chr4 85847572 85847873 -98440789 + AluSx SINE Alu 1 299 -13 23 0 0 0 chr4 85847873 85847896 -98440766 + AT_rich Low_complexity Low_complexity 1 23 0 422 308 105 71 chr4 85848013 85848187 -98440475 + L2 LINE L2 2852 3019 -294 1972 172 69 15 chr4 85848187 85848593 -98440069 + MSTA LTR MaLR 1 428 0 422 308 105 71 chr4 85848593 85848857 -98439805 + L2 LINE L2 3019 3305 -8 581 260 68 11 chr4 85849078 85849255 -98439407 - MIR SINE MIR 0 262 76 220 276 23 23 chr4 85849954 85850041 -98438621 + GA-rich Low_complexity Low_complexity 3 89 0 24 0 0 0 chr4 85851625 85851649 -98437013 + AT_rich Low_complexity Low_complexity 1 24 0 1354 211 11 7 chr4 85852085 85852370 -98436292 + AluJo SINE Alu 1 286 -26 1502 194 46 7 chr4 85852473 85852809 -98435853 + MLT2B2 LTR ERVL 1 366 -48 197 224 26 9 chr4 85852834 85852950 -98435712 + (TA)n Simple_repeat Simple_repeat 2 119 0 1146 115 0 0 chr4 85852980 85853154 -98435508 + (TA)n Simple_repeat Simple_repeat 1 174 0 6860 126 53 23 chr4 85853154 85854349 -98434313 - Tigger3b DNA MER2_type 0 1231 2 8401 166 36 19 chr4 85854369 85855860 -98432802 + ERVL LTR ERVL 3670 5186 -578 1324 187 256 69 chr4 85855860 85856290 -98432372 + MLT2B1 LTR ERVL 23 537 -17 688 255 93 60 chr4 85856579 85856932 -98431730 - L2 LINE L2 -6 3307 2943 2604 280 65 7 chr4 85856952 85857727 -98430935 - L2 LINE L2 -517 2797 1978 187 288 50 0 chr4 85857753 85857833 -98430829 + L2 LINE L2 2458 2541 -773 917 315 94 32 chr4 85857837 85858452 -98430210 - MLT2F LTR ERVL -6 657 5 1050 212 162 50 chr4 85859163 85859715 -98428947 + MLT1E3 LTR MaLR 1 624 0 1482 285 45 10 chr4 85859752 85860149 -98428513 - MLT1G1 LTR MaLR -176 419 9 1506 179 19 8 chr4 85861565 85861828 -98426834 + Tigger7 DNA MER2_type 1 266 -467 213 39 0 0 chr4 85861828 85861854 -98426808 + (CA)n Simple_repeat Simple_repeat 1 26 0 201 175 0 0 chr4 85861855 85861895 -98426767 + (TATATG)n Simple_repeat Simple_repeat 6 45 0 455 223 2 0 chr4 85861910 85861997 -98426665 + Tigger7 DNA MER2_type 2415 2487 0 830 115 0 0 chr4 85862089 85862202 -98426460 + AluJo SINE Alu 12 124 -188 23 0 0 0 chr4 85862203 85862226 -98426436 + AT_rich Low_complexity Low_complexity 1 23 0 291 393 43 0 chr4 85864743 85864883 -98423779 + MIR SINE MIR 26 171 -91 216 0 0 0 chr4 85865698 85865722 -98422940 + (CA)n Simple_repeat Simple_repeat 1 24 0 207 214 0 36 chr4 85867470 85867526 -98421136 + G-rich Low_complexity Low_complexity 6 59 0 249 33 0 0 chr4 85867704 85867734 -98420928 + (TG)n Simple_repeat Simple_repeat 1 30 0 215 61 30 0 chr4 85868037 85868070 -98420592 + (TC)n Simple_repeat Simple_repeat 2 35 0 1994 130 10 0 chr4 85869836 85870135 -98418527 - AluSg SINE Alu -8 302 1 2235 100 0 10 chr4 85870207 85870517 -98418145 - AluSq SINE Alu -6 307 1 21 36 0 0 chr4 85871279 85871307 -98417355 + AT_rich Low_complexity Low_complexity 1 28 0 587 220 182 0 chr4 85872156 85872315 -98416347 + MER5A DNA MER1_type 2 189 0 279 302 35 0 chr4 85873014 85873100 -98415562 + L2 LINE L2 3221 3309 -4 21 36 0 0 chr4 85874985 85875013 -98413649 + AT_rich Low_complexity Low_complexity 1 28 0 1066 144 17 6 chr4 85875418 85875591 -98413071 + AluJo SINE Alu 133 307 -5 241 252 113 26 chr4 85877207 85877322 -98411340 + L2 LINE L2 3135 3259 -54 991 181 0 18 chr4 85877404 85877575 -98411087 - FRAM SINE Alu -11 165 1 840 47 0 0 chr4 85877919 85878026 -98410636 - L1PA5 LINE L1 0 6154 6048 195 42 0 0 chr4 85878714 85878738 -98409924 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1923 135 6 29 chr4 85878887 85879198 -98409464 + AluSx SINE Alu 1 304 -8 2315 84 0 10 chr4 85879874 85880182 -98408480 - AluSc SINE Alu -4 305 1 1781 171 106 9 chr4 85880209 85880238 -98408424 - MLT2C1 LTR ERVL -8 389 364 491 45 15 0 chr4 85880238 85880304 -98408358 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 1781 171 106 9 chr4 85880304 85880624 -98408038 - MLT2C1 LTR ERVL -33 364 6 406 347 46 92 chr4 85882430 85882710 -98405952 + L2 LINE L2 2943 3206 -66 393 22 0 0 chr4 85882710 85882756 -98405906 + (CA)n Simple_repeat Simple_repeat 2 47 0 406 347 46 92 chr4 85882756 85882821 -98405841 + L2 LINE L2 3206 3272 0 1911 149 0 17 chr4 85882913 85883208 -98405454 - AluJo SINE Alu -12 300 11 321 118 13 26 chr4 85886248 85886324 -98402338 + (TTTA)n Simple_repeat Simple_repeat 2 76 0 435 268 67 12 chr4 85886409 85886573 -98402089 - MIR SINE MIR -14 248 76 39 51 0 13 chr4 85887075 85887108 -98401554 + AT_rich Low_complexity Low_complexity 1 33 -44 1920 154 0 0 chr4 85887108 85887394 -98401268 + AluSx SINE Alu 1 286 -26 39 51 0 13 chr4 85887394 85887438 -98401224 + AT_rich Low_complexity Low_complexity 33 77 0 750 274 15 5 chr4 85888315 85888519 -98400143 - MIR SINE MIR -21 241 36 361 164 45 0 chr4 85889209 85889276 -98399386 + Tigger2 DNA MER2_type 2 71 -2647 651 253 36 18 chr4 85889310 85889476 -98399186 - MER8 DNA MER2_type -61 178 10 270 261 82 0 chr4 85891282 85891365 -98397297 - MLT1K LTR MaLR -8 607 492 218 411 35 9 chr4 85891848 85892074 -98396588 - L2 LINE L2 -385 2929 2698 4708 82 10 10 chr4 85892111 85892803 -98395859 - L1PA3 LINE L1 0 6155 5464 765 238 72 0 chr4 85893371 85893552 -98395110 + MER20 DNA MER1_type 7 200 -19 610 277 45 17 chr4 85893562 85893739 -98394923 + MER5A DNA MER1_type 1 182 -7 226 256 244 0 chr4 85894332 85894410 -98394252 - MER5A DNA MER1_type -83 106 10 29 28 0 0 chr4 85894572 85894608 -98394054 + AT_rich Low_complexity Low_complexity 1 36 0 959 98 148 44 chr4 85894673 85894778 -98393884 + MER30 DNA MER1_type 1 94 -136 324 0 0 0 chr4 85894778 85894814 -98393848 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 959 98 148 44 chr4 85894814 85894891 -98393771 + MER30 DNA MER1_type 94 202 -28 938 205 29 4 chr4 85894974 85895213 -98393449 - L1MA5 LINE L1 -2 6298 6054 43624 39 4 2 chr4 85895546 85901155 -98387507 - L1P1 LINE L1 -529 5626 7 1341 227 37 4 chr4 85901182 85901333 -98387329 - AluJo SINE Alu -30 282 117 189 0 0 0 chr4 85901333 85901354 -98387308 + (TTA)n Simple_repeat Simple_repeat 1 21 0 1341 227 37 4 chr4 85901354 85901475 -98387187 - AluJo SINE Alu -195 117 1 194 301 27 0 chr4 85901514 85901587 -98387075 - L2 LINE L2 -860 2454 2380 200 282 14 28 chr4 85901949 85902020 -98386642 - MIR SINE MIR 0 262 193 531 289 28 41 chr4 85902051 85902294 -98386368 - MIR SINE MIR -1 261 21 488 288 34 0 chr4 85903410 85903556 -98385106 - MIR SINE MIR 0 262 112 252 336 60 0 chr4 85903704 85903820 -98384842 + MIR SINE MIR 138 260 -2 21 71 0 0 chr4 85905234 85905276 -98383386 + AT_rich Low_complexity Low_complexity 1 42 0 340 305 60 6 chr4 85905671 85905838 -98382824 - MIR SINE MIR -2 260 85 295 412 68 0 chr4 85907637 85907785 -98380877 - L2 LINE L2 0 3272 3115 1797 140 60 23 chr4 85908141 85908490 -98380172 + MER47A DNA MER2_type 2 363 -3 21 0 0 0 chr4 85908945 85908966 -98379696 + AT_rich Low_complexity Low_complexity 1 21 0 10923 37 0 0 chr4 85909611 85911689 -98376973 - L1PA4 LINE L1 -7 6148 4071 3003 107 41 0 chr4 85912591 85913059 -98375603 - L1MA3 LINE L1 -225 6080 5594 1364 126 22 0 chr4 85913059 85913279 -98375383 + L1MA3 LINE L1 6071 6305 0 23 68 0 0 chr4 85913307 85913351 -98375311 + AT_rich Low_complexity Low_complexity 1 44 0 335 346 96 0 chr4 85914079 85914235 -98374427 - MIR SINE MIR -72 190 20 756 293 32 16 chr4 85914597 85914846 -98373816 - MIR SINE MIR -4 258 6 212 240 20 0 chr4 85915352 85915402 -98373260 + MER5C DNA MER1_type 2 52 -272 232 278 103 0 chr4 85915417 85915514 -98373148 + MER5C DNA MER1_type 218 324 0 1581 295 34 14 chr4 85916450 85916951 -98371711 + L1MEc LINE L1 55 565 -5831 * 2446 237 20 50 chr4 85916944 85917601 -98371061 + L1ME1 LINE L1 5448 6082 -84 1001 213 49 0 chr4 85917601 85917826 -98370836 + MER46A DNA MER2_type 1 236 0 2446 237 20 50 chr4 85917826 85917903 -98370759 + L1ME1 LINE L1 6082 6160 -6 1017 133 205 0 chr4 85920013 85920208 -98368454 + MER46A DNA MER2_type 1 235 -1 1437 156 56 35 chr4 85921517 85921805 -98366857 - AluJo SINE Alu -10 302 9 198 0 0 0 chr4 85922251 85922273 -98366389 + (TA)n Simple_repeat Simple_repeat 1 22 0 2024 136 0 0 chr4 85922437 85922731 -98365931 + AluSx SINE Alu 1 294 -18 708 306 18 27 chr4 85922997 85923216 -98365446 + MIR SINE MIR 14 230 -32 688 196 0 14 chr4 85923216 85923364 -98365298 + L1PA15 LINE L1 6020 6165 0 321 156 104 0 chr4 85923494 85923571 -98365091 + L1MB4 LINE L1 5814 5898 -282 200 136 68 0 chr4 85925028 85925072 -98363590 + (TTAAA)n Simple_repeat Simple_repeat 1 47 0 22 0 0 0 chr4 85927904 85927926 -98360736 + AT_rich Low_complexity Low_complexity 1 22 0 539 152 24 116 chr4 85929316 85929480 -98359182 + MER104 DNA Tc2 29 177 -3 22 0 0 0 chr4 85930364 85930386 -98358276 + AT_rich Low_complexity Low_complexity 1 22 0 328 316 60 8 chr4 85931435 85931568 -98357094 + L3b LINE CR1 1434 1573 -10 302 141 0 31 chr4 85931629 85931693 -98356969 + (TATG)n Simple_repeat Simple_repeat 1 62 0 321 247 23 33 chr4 85931693 85931711 -98356951 + L1MC4 LINE L1 6566 6702 -1139 2216 108 51 20 chr4 85934162 85934515 -98354147 - THE1B LTR MaLR 0 364 1 434 281 174 22 chr4 85934589 85934813 -98353849 + MIR SINE MIR 2 259 -3 329 231 65 65 chr4 85935358 85935466 -98353196 + L2 LINE L2 3164 3271 -1 418 377 46 8 chr4 85936270 85936509 -98352153 + MIR SINE MIR 15 262 0 3142 134 11 13 chr4 85937231 85937865 -98350797 + L1MC1 LINE L1 5644 6332 -1 238 211 70 14 chr4 85937979 85938050 -98350612 + L1ME LINE L1 5716 5790 -331 298 218 23 46 chr4 85938087 85938174 -98350488 + MLT1L LTR MaLR 1 85 -530 256 240 24 5 chr4 85938242 85938340 -98350322 + MLT1L LTR MaLR 124 287 -328 535 278 119 18 chr4 85938456 85938683 -98349979 + LTR16A LTR ERVL 19 268 -182 297 0 0 0 chr4 85938787 85938820 -98349842 + (CA)n Simple_repeat Simple_repeat 2 34 0 1743 170 42 12 chr4 85938990 85939326 -98349336 - MER21B LTR ERV1 -69 794 449 2211 271 21 32 chr4 85940778 85941866 -98346796 - L1P LINE L1 -2670 3476 2401 581 313 23 12 chr4 85942775 85943034 -98345628 + Tigger7 DNA MER2_type 5 266 -2221 213 39 0 0 chr4 85943034 85943060 -98345602 + (CA)n Simple_repeat Simple_repeat 1 26 0 213 178 0 0 chr4 85943060 85943105 -98345557 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 2067 130 0 10 chr4 85944917 85945217 -98343445 + AluSx SINE Alu 1 297 -15 996 170 106 7 chr4 85945707 85945990 -98342672 + MER33 DNA MER1_type 1 311 -13 297 51 0 0 chr4 85947326 85947365 -98341297 + (TG)n Simple_repeat Simple_repeat 1 39 0 219 381 31 0 chr4 85947420 85947517 -98341145 + MIR SINE MIR 6 105 -157 22 35 0 0 chr4 85948132 85948161 -98340501 + AT_rich Low_complexity Low_complexity 1 29 0 1254 208 33 68 chr4 85948983 85949320 -98339342 + MER21B LTR ERV1 1 325 -538 1606 123 44 17 chr4 85949339 85949632 -98339030 - L1MA1 LINE L1 0 6302 6002 22791 82 9 5 chr4 85949941 85953977 -98334685 - L1PA7 LINE L1 0 6469 2418 12868 92 2 3 chr4 85953982 85955711 -98332951 - L1PA7 LINE L1 -4734 1727 1 22 0 0 0 chr4 85956513 85956535 -98332127 + AT_rich Low_complexity Low_complexity 1 22 0 183 42 0 0 chr4 85956657 85956681 -98331981 + (GTTTG)n Simple_repeat Simple_repeat 1 24 0 1876 176 3 3 chr4 85957176 85957488 -98331174 - AluJo SINE Alu 0 312 1 22 0 0 0 chr4 85957613 85957635 -98331027 + AT_rich Low_complexity Low_complexity 1 22 0 335 295 56 13 chr4 85958246 85958403 -98330259 - MLT1G1 LTR MaLR -388 161 1 182 171 0 0 chr4 85958734 85958769 -98329893 - L3 LINE CR1 -304 1273 1239 4285 263 107 27 chr4 85959425 85961234 -98327428 - L2 LINE L2 -150 3163 1195 229 209 0 0 chr4 85961509 85961552 -98327110 - MIR SINE MIR -67 141 99 528 253 94 35 chr4 85962858 85963028 -98325634 + MER5A DNA MER1_type 9 188 -1 4824 192 9 45 chr4 85963299 85963938 -98324724 - L1 LINE L1 -1279 4867 4207 2182 112 0 10 chr4 85963938 85964241 -98324421 - AluSg SINE Alu -10 300 1 4824 192 9 45 chr4 85964241 85964528 -98324134 - L1 LINE L1 -1939 4207 3989 1742 183 3 19 chr4 85964528 85964840 -98323822 - AluJb SINE Alu -1 311 5 4824 192 9 45 chr4 85964840 85965081 -98323581 - L1 LINE L1 -2157 3989 3741 723 167 8 15 chr4 85965090 85965222 -98323440 + L1PA16 LINE L1 6030 6160 -6 743 185 7 15 chr4 85965482 85965617 -98323045 + AluJo SINE Alu 1 134 -178 422 347 171 9 chr4 85965707 85966151 -98322511 - L2 LINE L2 -508 2806 2291 1808 172 24 9 chr4 85966718 85967050 -98321612 + MER44D DNA MER2_type 1 607 -2 223 283 38 0 chr4 85968149 85968202 -98320460 - L2 LINE L2 -8 3264 3210 26 0 0 0 chr4 85969007 85969033 -98319629 + AT_rich Low_complexity Low_complexity 1 26 0 1856 199 68 24 chr4 85969516 85969974 -98318688 - L1MD2 LINE L1 0 6359 5882 283 266 168 26 chr4 85970633 85970746 -98317916 + L2 LINE L2 3141 3269 -3 1574 184 3 38 chr4 85971805 85972121 -98316541 - AluJb SINE Alu -7 305 1 386 275 33 0 chr4 85972222 85972342 -98316320 - MIR SINE MIR -55 207 84 767 295 139 42 chr4 85972565 85973070 -98315592 + MLT1H1 LTR MaLR 2 555 0 623 325 88 52 chr4 85973450 85973918 -98314744 + LTR16B LTR ERVL 2 446 -18 42291 38 22 1 chr4 85974354 85980378 -98308284 + L1PA3 LINE L1 1 6151 -4 2112 138 0 0 chr4 85980957 85981262 -98307400 - AluSq SINE Alu -8 305 1 531 272 19 100 chr4 85981391 85981652 -98307010 - MIR SINE MIR -15 247 8 1501 184 50 4 chr4 85982696 85982974 -98305688 - AluJb SINE Alu -21 291 1 215 204 0 23 chr4 85983587 85983631 -98305031 + (TG)n Simple_repeat Simple_repeat 2 44 0 2167 103 14 0 chr4 85985601 85985893 -98302769 - AluSq SINE Alu -17 296 1 1072 201 123 20 chr4 85986265 85986509 -98302153 - AluJo SINE Alu -30 282 14 23 0 0 0 chr4 85986674 85986697 -98301965 + AT_rich Low_complexity Low_complexity 1 23 0 649 268 16 27 chr4 85987237 85987420 -98301242 - LTR41 LTR ERVL -592 181 1 1964 127 3 3 chr4 85988770 85989075 -98299587 + AluSx SINE Alu 1 305 0 180 365 24 12 chr4 85989573 85989658 -98299004 - MIR SINE MIR -157 105 20 1547 176 0 49 chr4 85989808 85989978 -98298684 - AluJo SINE Alu -11 301 124 195 42 0 0 chr4 85989978 85990002 -98298660 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 2220 104 0 0 chr4 85990005 85990292 -98298370 - AluSg SINE Alu -23 287 1 1547 176 0 49 chr4 85990292 85990423 -98298239 - AluJo SINE Alu -190 122 11 30 0 0 0 chr4 85990540 85990570 -98298092 + AT_rich Low_complexity Low_complexity 1 30 0 2075 120 52 33 chr4 85991204 85991572 -98297090 - THE1C LTR MaLR 0 375 1 499 272 129 28 chr4 85991639 85991856 -98296806 + MIR SINE MIR 21 259 -3 376 287 32 0 chr4 85992969 85993063 -98295599 - MIR SINE MIR -116 146 50 332 293 28 19 chr4 85993318 85993424 -98295238 - L2 LINE L2 -15 3298 3192 2309 182 81 20 chr4 85993425 85994000 -98294662 - Tigger7 DNA MER2_type -96 2491 18 314 239 130 22 chr4 85994948 85995040 -98293622 + L2 LINE L2 3171 3272 0 1795 162 14 10 chr4 85995446 85995742 -98292920 - AluJb SINE Alu -15 297 1 5058 237 106 42 chr4 85996070 85998820 -98289842 - L1MB8 LINE L1 -4 6243 3671 1139 168 49 9 chr4 85998820 85999046 -98289616 - MER46A DNA MER2_type 0 236 2 5058 237 106 42 chr4 85999046 85999243 -98289419 - L1MB8 LINE L1 -2576 3671 3488 1377 109 54 0 chr4 85999243 85999464 -98289198 - L1MA2 LINE L1 0 6304 6072 5058 237 106 42 chr4 85999464 85999550 -98289112 - L1MB8 LINE L1 -2759 3488 2825 581 270 112 17 chr4 85999560 85999863 -98288799 - L1MB8 LINE L1 -3758 2468 2168 * 909 295 52 35 chr4 85999857 86000373 -98288289 - L1M4c LINE L1 -4436 2702 2027 * 4773 251 27 32 chr4 86000370 86001631 -98287031 - L1M4c LINE L1 -5548 1311 58 321 26 0 0 chr4 86001724 86001762 -98286900 + (CA)n Simple_repeat Simple_repeat 2 39 0 393 279 105 85 chr4 86002601 86002848 -98285814 - MIR SINE MIR -10 252 1 328 279 170 12 chr4 86003100 86003265 -98285397 - MIR SINE MIR -1 261 71 1431 187 54 39 chr4 86003546 86003877 -98284785 + MER44D DNA MER2_type 3 608 -1 180 125 0 0 chr4 86004012 86004044 -98284618 + (TA)n Simple_repeat Simple_repeat 1 32 0 456 72 0 0 chr4 86004329 86004398 -98284264 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 1427 214 176 28 chr4 86004448 86004845 -98283817 - MLT2B1 LTR ERVL -64 456 1 2161 103 7 0 chr4 86005035 86005327 -98283335 + AluSc SINE Alu 5 298 -11 928 149 7 0 chr4 86005507 86005661 -98283001 - L1PB2 LINE L1 -1 6150 5996 6732 192 23 10 chr4 86005661 86007107 -98281555 - L1 LINE L1 -1375 4771 3308 6334 184 39 22 chr4 86007109 86007501 -98281161 - L1PBa LINE L1 -3549 2654 2270 2139 141 0 0 chr4 86007501 86007814 -98280848 - AluSq SINE Alu 0 313 1 6334 184 39 22 chr4 86007814 86010611 -98278051 - L1PBa LINE L1 -3933 2270 1 432 252 30 0 chr4 86010658 86010793 -98277869 + L1PBa LINE L1 829 967 -5896 21 82 0 0 chr4 86012093 86012142 -98276520 + AT_rich Low_complexity Low_complexity 1 49 0 5840 207 97 13 chr4 86013233 86014701 -98273961 + L1M1 LINE L1 20 2029 -5536 * 14246 183 26 6 chr4 86014695 86018571 -98270091 + L1M1 LINE L1 2736 6691 -874 1515 162 65 84 chr4 86018571 86018625 -98270037 - THE1C LTR MaLR 0 375 322 333 0 0 0 chr4 86018625 86018662 -98270000 + (TA)n Simple_repeat Simple_repeat 2 38 0 1515 162 65 84 chr4 86018662 86018989 -98269673 - THE1C LTR MaLR -53 322 1 235 132 15 88 chr4 86018989 86019037 -98269625 + L1M LINE L1 6692 6735 -988 6038 149 25 18 chr4 86019144 86019364 -98269298 + L1MA3 LINE L1 5053 5270 -1035 1581 149 65 84 chr4 86019364 86019418 -98269244 - THE1C LTR MaLR 0 375 322 333 0 0 0 chr4 86019418 86019455 -98269207 + (TA)n Simple_repeat Simple_repeat 2 38 0 1581 149 65 84 chr4 86019455 86019782 -98268880 - THE1C LTR MaLR -53 322 1 6038 149 25 18 chr4 86019782 86020325 -98268337 + L1MA3 LINE L1 5270 5831 -474 2180 82 0 0 chr4 86020325 86020622 -98268040 + AluSx SINE Alu 13 309 0 6038 149 25 18 chr4 86020622 86021095 -98267567 + L1MA3 LINE L1 5831 6299 -6 23 33 0 0 chr4 86021564 86021594 -98267068 + AT_rich Low_complexity Low_complexity 1 30 0 277 273 0 0 chr4 86023116 86023182 -98265480 - MER45 DNA AcHobo 0 1581 1516 248 303 202 0 chr4 86023177 86023266 -98265396 - MER45 DNA AcHobo -1474 107 1 * 23 54 0 0 chr4 86023496 86023533 -98265129 + AT_rich Low_complexity Low_complexity 1 37 0 2059 117 4 0 chr4 86023779 86024238 -98264424 - AluSx SINE Alu 0 460 1 1642 203 35 28 chr4 86024352 86024752 -98263910 - L1PA16 LINE L1 -1663 4483 4081 5333 147 11 2 chr4 86024759 86026438 -98262224 + L1PA16 LINE L1 4495 6161 -5 433 293 55 17 chr4 86026583 86026764 -98261898 - MER117 DNA MER1_type -4 193 6 285 230 0 0 chr4 86027907 86027981 -98260681 + CT-rich Low_complexity Low_complexity 1 74 0 2042 120 0 102 chr4 86028702 86029094 -98259568 + L1PA15 LINE L1 5808 6159 -6 240 122 0 0 chr4 86030013 86030054 -98258608 + (TA)n Simple_repeat Simple_repeat 1 41 0 30 77 0 0 chr4 86030874 86030939 -98257723 + AT_rich Low_complexity Low_complexity 1 65 0 8078 154 18 29 chr4 86030954 86032087 -98256575 - L1MA4 LINE L1 -9 6291 5148 1924 164 3 0 chr4 86032087 86032385 -98256277 - AluJb SINE Alu -13 299 1 8078 154 18 29 chr4 86032385 86033915 -98254747 - L1MA4 LINE L1 -1152 5148 3464 25 75 0 0 chr4 86034090 86034143 -98254519 + AT_rich Low_complexity Low_complexity 1 53 0 308 294 119 40 chr4 86035563 86035740 -98252922 + L2 LINE L2 2445 2635 -679 231 359 22 0 chr4 86036063 86036155 -98252507 + L2 LINE L2 3125 3218 -54 472 309 60 37 chr4 86036217 86036515 -98252147 + Charlie2 DNA MER1_type 2 306 -2476 442 219 33 53 chr4 86036704 86036855 -98251807 + Charlie2a DNA MER1_type 1511 1658 -1204 425 266 102 80 chr4 86037359 86037585 -98251077 - MIR SINE MIR 0 262 32 673 206 62 16 chr4 86037586 86037780 -98250882 - L1MA4 LINE L1 -5 6295 6093 235 235 0 0 chr4 86039883 86039934 -98248728 + (TATATG)n Simple_repeat Simple_repeat 3 53 0 66 73 0 0 chr4 86041156 86041292 -98247370 + AT_rich Low_complexity Low_complexity 1 136 0 820 114 8 8 chr4 86041824 86041956 -98246706 + FLAM_C SINE Alu 2 133 0 33 25 0 0 chr4 86042003 86042043 -98246619 + AT_rich Low_complexity Low_complexity 1 40 0 250 315 79 0 chr4 86042692 86042819 -98245843 - L1ME LINE L1 -400 5764 5628 23 0 0 0 chr4 86042840 86042863 -98245799 + AT_rich Low_complexity Low_complexity 1 23 0 311 279 7 59 chr4 86042965 86043101 -98245561 - L1ME LINE L1 -2387 5421 5293 429 243 66 33 chr4 86043103 86043284 -98245378 - L1P5 LINE L1 -710 5441 5255 591 264 132 13 chr4 86043289 86043524 -98245138 + LTR16A1 LTR ERVL 189 451 -6 20392 31 3 0 chr4 86043894 86046371 -98242291 - L1P LINE L1 -794 5352 2868 191 317 0 17 chr4 86046372 86046432 -98242230 - MIR SINE MIR -203 59 1 22 56 0 0 chr4 86047014 86047050 -98241612 + AT_rich Low_complexity Low_complexity 1 36 0 218 294 49 20 chr4 86047967 86048069 -98240593 - MIR SINE MIR -25 237 133 1542 187 0 30 chr4 86048427 86048726 -98239936 - AluJb SINE Alu -20 292 3 1659 201 0 16 chr4 86050111 86050453 -98238209 + AluJo SINE Alu 3 312 0 21 26 0 26 chr4 86050841 86050852 -98237810 + AT_rich Low_complexity Low_complexity 1 11 -27 7571 27 5 0 chr4 86050852 86052401 -98236261 + L1PA3 LINE L1 4602 6154 -1 21 26 0 26 chr4 86052401 86052428 -98236234 + AT_rich Low_complexity Low_complexity 11 38 0 2315 74 3 3 chr4 86052507 86052806 -98235856 - AluY SINE Alu -12 299 1 4433 127 25 30 chr4 86053171 86053959 -98234703 + L1MA7 LINE L1 5508 6291 0 197 306 269 11 chr4 86054479 86054665 -98233997 + MIR SINE MIR 2 235 -27 1104 100 6 12 chr4 86054969 86055139 -98233523 + L1PA5 LINE L1 5985 6153 -1 234 306 48 0 chr4 86057652 86057714 -98230948 + MIR SINE MIR 34 98 -110 268 345 148 7 chr4 86057920 86058062 -98230600 - MIR SINE MIR -21 241 80 410 270 203 0 chr4 86058062 86058225 -98230437 - MIR SINE MIR -64 198 3 23 0 0 0 chr4 86058237 86058260 -98230402 + AT_rich Low_complexity Low_complexity 1 23 0 255 367 160 0 chr4 86058523 86058692 -98229970 - MIR SINE MIR -26 236 41 913 266 88 68 chr4 86059318 86060167 -98228495 - L2 LINE L2 0 3313 2440 1087 184 35 5 chr4 86062024 86062225 -98226437 + AluJo SINE Alu 76 282 -30 248 0 31 0 chr4 86062231 86062263 -98226399 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 2249 103 0 10 chr4 86062314 86062626 -98226036 - AluSx SINE Alu -3 309 1 1958 128 7 13 chr4 86062972 86063276 -98225386 - AluSx SINE Alu -7 305 4 550 322 13 27 chr4 86063530 86063768 -98224894 - MIR SINE MIR -1 261 30 796 274 72 41 chr4 86064765 86064807 -98223855 - MLT1I LTR MaLR 0 409 370 2020 109 3 34 chr4 86064807 86065132 -98223530 + AluSq SINE Alu 2 317 0 796 274 72 41 chr4 86065132 86065479 -98223183 - MLT1I LTR MaLR -39 370 7 2014 112 7 3 chr4 86066848 86067134 -98221528 + AluY SINE Alu 3 289 -22 4144 169 40 13 chr4 86068396 86070203 -98218459 - L1MA3 LINE L1 -4 7720 5792 515 186 59 10 chr4 86070201 86070303 -98218359 - L1MA3 LINE L1 -5745 1820 1714 * 4499 218 43 20 chr4 86070305 86071135 -98217527 - L1MA3 LINE L1 -6525 1040 182 7628 25 0 0 chr4 86071135 86072517 -98216145 - L1PA3 LINE L1 0 6155 4778 4499 218 43 20 chr4 86072517 86072688 -98215974 - L1MA3 LINE L1 -7383 182 16 2434 62 0 7 chr4 86073526 86073830 -98214832 - AluY SINE Alu -9 302 1 222 303 88 67 chr4 86074716 86075059 -98213603 + L2 LINE L2 1459 1808 -1506 1008 202 43 5 chr4 86075105 86075313 -98213349 - MER20 DNA MER1_type 0 219 4 228 243 14 54 chr4 86076749 86076823 -98211839 + MIR SINE MIR 142 212 -50 27 0 0 0 chr4 86077779 86077806 -98210856 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr4 86078379 86078408 -98210254 + AT_rich Low_complexity Low_complexity 1 29 0 183 80 0 0 chr4 86078498 86078523 -98210139 + (T)n Simple_repeat Simple_repeat 1 25 0 224 297 34 59 chr4 86078681 86078799 -98209863 - L2 LINE L2 -28 3285 3171 2004 124 3 26 chr4 86079541 86079848 -98208814 - AluSq SINE Alu -13 300 1 1918 231 79 42 chr4 86079849 86080534 -98208128 - L1MC4 LINE L1 0 8042 7333 187 30 30 30 chr4 86080719 86080752 -98207910 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 1192 230 59 31 chr4 86080962 86081353 -98207309 - LTR37B LTR ERV1 0 468 67 23 0 0 0 chr4 86081689 86081712 -98206950 + AT_rich Low_complexity Low_complexity 1 23 0 641 153 0 0 chr4 86083131 86083229 -98205433 - AluS SINE Alu -214 99 2 667 299 40 49 chr4 86084458 86084786 -98203876 - LTR16A LTR ERVL -104 346 22 290 294 0 12 chr4 86084814 86084899 -98203763 - MIR SINE MIR -79 183 100 1216 200 100 13 chr4 86084920 86085360 -98203302 - Charlie1 DNA MER1_type -1 2760 2208 1047 327 72 25 chr4 86086444 86087291 -98201371 + L2 LINE L2 2417 3297 -16 21 0 0 0 chr4 86088798 86088819 -98199843 + AT_rich Low_complexity Low_complexity 1 21 0 374 370 123 10 chr4 86090005 86090402 -98198260 + L2 LINE L2 1821 2262 -1052 266 360 12 0 chr4 86090587 86090673 -98197989 + L2 LINE L2 2553 2639 -675 1576 136 8 4 chr4 86090688 86090955 -98197707 + AluSx SINE Alu 42 309 0 3538 98 13 2 chr4 86091061 86091583 -98197079 - L1MA2 LINE L1 -2 6302 5775 452 215 0 11 chr4 86091791 86091884 -98196778 - Tigger5 DNA MER2_type 0 2323 2232 393 189 0 14 chr4 86091932 86092006 -98196656 - Tigger5 DNA MER2_type 0 2323 2251 236 214 0 36 chr4 86091975 86092031 -98196631 - Tigger5 DNA MER2_type -2269 54 1 * 259 337 83 63 chr4 86093013 86093411 -98195251 + L2 LINE L2 2567 2972 -342 34 42 0 0 chr4 86094123 86094171 -98194491 + AT_rich Low_complexity Low_complexity 1 48 0 369 0 0 0 chr4 86094624 86094665 -98193997 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 832 225 106 13 chr4 86094736 86094963 -98193699 + Tigger7 DNA MER2_type 15 262 -288 208 333 0 0 chr4 86095043 86095112 -98193550 + GA-rich Low_complexity Low_complexity 3 71 0 2698 89 0 0 chr4 86095224 86095596 -98193066 + L1PA13 LINE L1 5789 6160 -3 349 212 0 0 chr4 86096030 86096096 -98192566 + Tigger7 DNA MER2_type 2387 2452 -35 286 301 222 9 chr4 86097061 86097277 -98191385 - MIR SINE MIR 0 262 1 193 229 83 0 chr4 86097377 86097425 -98191237 + L2 LINE L2 3262 3313 0 413 298 48 53 chr4 86097659 86098015 -98190647 + L1M4 LINE L1 4056 4409 -1737 337 313 43 39 chr4 86098236 86098469 -98190193 + L1M4 LINE L1 4568 4801 -1345 2419 54 0 13 chr4 86099355 86099669 -98188993 + AluY SINE Alu 1 310 -1 2016 112 14 0 chr4 86099694 86099989 -98188673 + AluSx SINE Alu 1 299 -13 1357 271 22 0 chr4 86100718 86101032 -98187630 + L1MDb LINE L1 1 321 -6088 331 355 16 0 chr4 86101047 86101168 -98187494 + L1MDb LINE L1 384 506 -5903 * 2715 183 46 77 chr4 86101164 86101799 -98186863 + L1MA7 LINE L1 5561 6171 -120 186 103 0 0 chr4 86101799 86101828 -98186834 + (CA)n Simple_repeat Simple_repeat 2 30 0 2715 183 46 77 chr4 86101828 86101937 -98186725 + L1MA7 LINE L1 6171 6282 -9 274 62 62 0 chr4 86102721 86102769 -98185893 + GA-rich Low_complexity Low_complexity 2 52 0 449 259 36 7 chr4 86103934 86104073 -98184589 + MIR SINE MIR 71 213 -49 333 244 269 19 chr4 86105783 86105939 -98182723 + MIR SINE MIR 65 259 -3 1950 71 3 142 chr4 86106890 86107243 -98181419 + AluY SINE Alu 1 304 -7 1375 172 19 0 chr4 86108144 86108400 -98180262 - L1PA16 LINE L1 -9 6157 5897 462 260 0 10 chr4 86108443 86108547 -98180115 + LTR40a LTR ERVL 4 106 -413 1080 253 140 44 chr4 86108657 86109108 -98179554 + LTR40a LTR ERVL 26 519 0 219 266 374 0 chr4 86109831 86109970 -98178692 - MIR SINE MIR -13 249 59 21 0 0 0 chr4 86112099 86112120 -98176542 + AT_rich Low_complexity Low_complexity 1 21 0 227 146 21 0 chr4 86112182 86112230 -98176432 - L1MCa LINE L1 -4362 2064 2016 1268 140 96 20 chr4 86113209 86113501 -98175161 - L1MA7 LINE L1 -10 6281 5968 272 247 93 87 chr4 86114159 86114309 -98174353 + MIR SINE MIR 84 234 -28 698 289 78 45 chr4 86114645 86115158 -98173504 + HAL1b LINE L1 121 650 -698 1611 188 14 0 chr4 86115186 86115478 -98173184 + AluJo SINE Alu 1 296 -16 324 236 100 18 chr4 86115478 86115588 -98173074 + L2 LINE L2 3013 3131 -182 23 33 0 0 chr4 86115666 86115696 -98172966 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 86115785 86115806 -98172856 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 86115857 86115878 -98172784 + AT_rich Low_complexity Low_complexity 1 21 0 490 224 22 0 chr4 86115982 86116211 -98172451 + GA-rich Low_complexity Low_complexity 1 234 0 2045 104 24 17 chr4 86119306 86119603 -98169059 + AluSq SINE Alu 1 299 -14 1911 211 52 11 chr4 86120517 86120958 -98167704 + LTR40b LTR ERVL 4 462 0 910 268 36 42 chr4 86120959 86121265 -98167397 + HERVL40 LTR ERVL 1 304 -5226 728 251 5 20 chr4 86121266 86121461 -98167201 + HERVL40 LTR ERVL 1395 1586 -3944 * 1679 261 23 19 chr4 86121460 86121932 -98166730 + HERVL40 LTR ERVL 3616 4089 -1441 1186 285 88 63 chr4 86121922 86122469 -98166193 + HERVL40 LTR ERVL 2043 2378 -659 * 278 277 106 47 chr4 86122638 86122873 -98165789 + HERVL40 LTR ERVL 2460 2708 -329 1086 230 66 0 chr4 86123352 86123609 -98165053 + HERVL40 LTR ERVL 5242 5515 -15 1280 252 80 43 chr4 86123625 86124065 -98164597 + LTR40b LTR ERVL 7 462 0 215 354 165 0 chr4 86125186 86125313 -98163349 - MIR SINE MIR -112 150 3 345 279 42 62 chr4 86125923 86126081 -98162581 - MLT1J2 LTR MaLR -30 416 267 2523 147 21 9 chr4 86126565 86126988 -98161674 - MSTA LTR MaLR 0 428 1 23 33 0 0 chr4 86127140 86127170 -98161492 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 86128288 86128310 -98160352 + AT_rich Low_complexity Low_complexity 1 22 0 206 309 0 0 chr4 86129753 86129808 -98158854 + L2 LINE L2 3218 3272 0 220 355 0 0 chr4 86130495 86130557 -98158105 + MIR SINE MIR 53 114 -148 1233 202 6 96 chr4 86130561 86130893 -98157769 - AluJo SINE Alu 0 302 1 233 75 25 0 chr4 86130957 86130997 -98157665 + (TTTTA)n Simple_repeat Simple_repeat 1 41 0 1154 36 0 0 chr4 86130997 86131134 -98157528 - L1PA5 LINE L1 -24 6130 5994 * 1197 41 0 0 chr4 86131132 86131279 -98157383 + L1PA5 LINE L1 5834 5980 -174 185 323 108 15 chr4 86131421 86131551 -98157111 + L2 LINE L2 2776 2917 -397 5670 120 12 19 chr4 86131573 86132293 -98156369 - L1PB3 LINE L1 -2 6152 5438 1966 62 0 8 chr4 86132293 86132535 -98156127 - AluY SINE Alu -13 298 59 5670 120 12 19 chr4 86132535 86132758 -98155904 - L1PB3 LINE L1 -716 5438 5215 3521 191 33 16 chr4 86132757 86133568 -98155094 + L1PB3 LINE L1 4408 5232 -914 * 487 316 206 3 chr4 86133568 86133894 -98154768 + L2 LINE L2 2922 3313 0 1188 252 90 73 chr4 86134246 86134781 -98153881 + MER77 LTR ERV1 54 597 -8 233 299 52 0 chr4 86134787 86134864 -98153798 + MER21A LTR ERV1 688 768 -163 2082 104 14 0 chr4 86135132 86135442 -98153220 - AluSx SINE Alu 0 314 1 2102 129 0 0 chr4 86135474 86135768 -98152894 - AluSq SINE Alu -19 294 1 415 176 0 0 chr4 86136673 86136741 -98151921 - FLAM SINE Alu -22 121 54 3905 138 22 10 chr4 86137124 86137814 -98150848 - L1PA16 LINE L1 -9 6157 5460 2332 90 3 31 chr4 86137814 86138135 -98150527 + AluSx SINE Alu 1 312 0 907 68 0 0 chr4 86138147 86138265 -98150397 + L1MA3 LINE L1 6156 6273 -32 338 196 41 52 chr4 86138290 86138387 -98150275 - L1MC4 LINE L1 -1339 6703 6608 319 134 2 9 chr4 86138411 86138497 -98150165 - L1PA16 LINE L1 -689 5476 5392 21 0 0 0 chr4 86139069 86139090 -98149572 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 86140524 86140545 -98148117 + AT_rich Low_complexity Low_complexity 1 21 0 1527 173 36 46 chr4 86140605 86140912 -98147750 - AluJo SINE Alu -8 304 1 207 369 0 0 chr4 86141100 86141165 -98147497 + L2 LINE L2 3197 3261 -52 21 36 0 0 chr4 86141462 86141490 -98147172 + AT_rich Low_complexity Low_complexity 1 28 0 2019 157 42 49 chr4 86141624 86142095 -98146567 - L1MA7 LINE L1 -8 6283 5816 1934 116 7 36 chr4 86142640 86142943 -98145719 + AluSg SINE Alu 17 310 0 255 61 0 0 chr4 86143624 86143657 -98145005 + (TTTC)n Simple_repeat Simple_repeat 2 34 0 29 0 0 0 chr4 86144210 86144239 -98144423 + AT_rich Low_complexity Low_complexity 1 29 0 2030 128 22 76 chr4 86144776 86145184 -98143478 - MLT1B LTR MaLR 0 390 5 530 295 98 4 chr4 86146844 86147078 -98141584 + L1MC5 LINE L1 5613 5868 -1940 1700 186 17 0 chr4 86147079 86147375 -98141287 - AluJb SINE Alu -7 305 5 647 246 133 86 chr4 86147599 86148184 -98140478 + L1MC5 LINE L1 7317 7929 -32 29 28 0 0 chr4 86148375 86148411 -98140251 + AT_rich Low_complexity Low_complexity 1 36 0 2844 13 0 0 chr4 86148768 86149078 -98139584 + AluYa5 SINE Alu 1 310 -1 1153 148 10 0 chr4 86149380 86149576 -98139086 + L1PBa LINE L1 3 200 -6663 12921 153 74 6 chr4 86149576 86153200 -98135462 + L1PBa LINE L1 634 4504 -2358 34356 54 4 0 chr4 86153200 86157526 -98131136 + L1PA4 LINE L1 2 4343 -1803 4046 51 0 4 chr4 86157526 86158029 -98130633 + L1PA4 LINE L1 5645 6155 0 4130 198 20 49 chr4 86158091 86159134 -98129528 + L1 LINE L1 4491 5503 -1359 2273 45 41 21 chr4 86159238 86159528 -98129134 + AluY SINE Alu 16 311 0 270 0 0 0 chr4 86159529 86159559 -98129103 + (TA)n Simple_repeat Simple_repeat 2 31 0 33 25 0 0 chr4 86159726 86159766 -98128896 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr4 86160012 86160033 -98128629 + AT_rich Low_complexity Low_complexity 1 21 0 448 304 114 14 chr4 86161643 86161863 -98126799 + MIR SINE MIR 21 262 0 23 0 0 0 chr4 86161954 86161977 -98126685 + AT_rich Low_complexity Low_complexity 1 23 0 2776 69 0 3 chr4 86162121 86162485 -98126177 + L1PA8 LINE L1 5810 6172 0 25 90 0 0 chr4 86162560 86162627 -98126035 + AT_rich Low_complexity Low_complexity 1 67 0 25 0 0 0 chr4 86162718 86162743 -98125919 + AT_rich Low_complexity Low_complexity 1 25 0 530 291 84 6 chr4 86163270 86163449 -98125213 + MIR SINE MIR 3 195 -67 12297 108 10 6 chr4 86213450 86215195 -98073467 + MER52-int LTR ERV1 4537 6287 -804 22 0 0 0 chr4 86215894 86215916 -98072746 + AT_rich Low_complexity Low_complexity 1 22 0 2837 182 71 23 chr4 86215956 86216642 -98072020 + Tigger7 DNA MER2_type 1 2587 0 688 273 73 50 chr4 86216884 86217184 -98071478 + MER110 LTR ERV1 171 477 -14 3034 157 20 133 chr4 86217786 86218533 -98070129 + MER52A LTR ERV1 643 1305 -450 369 0 0 0 chr4 86218817 86218858 -98069804 + (TA)n Simple_repeat Simple_repeat 1 41 0 319 266 37 28 chr4 86219756 86219865 -98068797 - L2 LINE L2 -4 3309 3200 2226 168 70 0 chr4 86220161 86220559 -98068103 - Tigger2 DNA MER2_type -2 2716 2291 432 152 0 0 chr4 86220571 86220637 -98068025 - Tigger2 DNA MER2_type -2652 66 1 937 222 3 2 chr4 86223090 86223279 -98065383 + MLT1B LTR MaLR 173 371 -11 2127 193 41 5 chr4 86223783 86224202 -98064460 + MER65A LTR ERV1 12 445 0 1639 198 0 16 chr4 86224246 86224554 -98064108 + AluJo SINE Alu 3 305 -7 196 53 53 0 chr4 86225216 86225254 -98063408 + T-rich Low_complexity Low_complexity 2 41 0 1778 135 21 7 chr4 86225256 86225537 -98063125 - AluSg SINE Alu -25 285 1 329 0 24 0 chr4 86225738 86225779 -98062883 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 180 0 0 0 chr4 86226035 86226055 -98062607 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 513 305 115 4 chr4 86226405 86226631 -98062031 - MIR SINE MIR -1 261 11 295 367 68 29 chr4 86226925 86227132 -98061530 - MIR SINE MIR -42 220 6 275 160 0 0 chr4 86227252 86227302 -98061360 + MER4-int LTR ERV1 1111 1160 -5438 2295 55 0 49 chr4 86227430 86227738 -98060924 + AluY SINE Alu 3 295 -16 217 277 21 11 chr4 86227770 86227864 -98060798 + (TA)n Simple_repeat Simple_repeat 2 96 0 180 330 34 34 chr4 86227961 86228049 -98060613 + MIR3 SINE MIR 112 199 -9 301 341 113 35 chr4 86229709 86230048 -98058614 + L2 LINE L2 2694 3048 -224 25 51 0 0 chr4 86230519 86230558 -98058104 + AT_rich Low_complexity Low_complexity 1 39 0 540 245 0 0 chr4 86231029 86231127 -98057535 - Charlie1 DNA MER1_type -2658 103 6 952 314 112 35 chr4 86231207 86231716 -98056946 - L2 LINE L2 -791 2523 1976 515 278 0 0 chr4 86231795 86231996 -98056666 + FLAM_A SINE Alu 1 201 0 228 241 0 19 chr4 86231996 86232050 -98056612 + GA-rich Low_complexity Low_complexity 2 54 0 24 0 0 0 chr4 86233647 86233671 -98054991 + AT_rich Low_complexity Low_complexity 1 24 0 1519 174 11 51 chr4 86236288 86236644 -98052018 - L1MC2 LINE L1 -8 7777 6235 2018 179 47 26 chr4 86236697 86237122 -98051540 + Tigger2a DNA MER2_type 1 434 0 32 43 0 0 chr4 86237680 86237726 -98050936 + AT_rich Low_complexity Low_complexity 1 46 0 40 21 0 0 chr4 86237986 86238033 -98050629 + AT_rich Low_complexity Low_complexity 1 47 0 24 32 0 0 chr4 86238184 86238215 -98050447 + AT_rich Low_complexity Low_complexity 1 31 0 21042 133 20 5 chr4 86238499 86242357 -98046305 - MER52A-int LTR ERV1 -3091 4000 1 4038 209 87 22 chr4 86242357 86243839 -98044823 - MER52A LTR ERV1 0 1755 2 227 121 0 0 chr4 86243829 86243862 -98044800 - MLT1G1 LTR MaLR -562 33 1 * 1918 149 3 7 chr4 86243867 86244162 -98044500 - AluSx SINE Alu -18 294 1 275 225 17 17 chr4 86244516 86244636 -98044026 + (TA)n Simple_repeat Simple_repeat 1 120 0 187 264 49 181 chr4 86244727 86244871 -98043791 + L3 LINE CR1 1426 1550 -27 1358 159 16 83 chr4 86244926 86245240 -98043422 - MLT1B LTR MaLR -3 387 95 2635 30 3 0 chr4 86245552 86245853 -98042809 + AluY SINE Alu 1 302 -9 2729 22 0 6 chr4 86246561 86246873 -98041789 - AluYa5 SINE Alu -1 310 1 352 221 105 0 chr4 86247210 86247296 -98041366 - L2 LINE L2 -2 3270 3176 227 283 117 33 chr4 86247364 86247484 -98041178 + L2 LINE L2 3143 3272 0 780 247 84 73 chr4 86247714 86248082 -98040580 - MLT2C1 LTR ERVL -18 379 8 886 211 12 0 chr4 86248096 86248262 -98040400 + FAM SINE Alu 1 168 -7 412 261 56 21 chr4 86248270 86248412 -98040250 - MIR SINE MIR 0 262 116 22 35 0 0 chr4 86249239 86249268 -98039394 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr4 86249385 86249409 -98039253 + AT_rich Low_complexity Low_complexity 1 24 0 2077 121 0 0 chr4 86250479 86250760 -98037902 - AluSc SINE Alu -20 289 9 375 82 0 0 chr4 86250760 86250809 -98037853 - Alu SINE Alu -252 51 3 1464 112 0 5 chr4 86250824 86251030 -98037632 - AluSg/x SINE Alu -9 303 99 1962 203 2 12 chr4 86251030 86251443 -98037219 - Tigger6 DNA MER2_type -1184 413 5 268 259 0 25 chr4 86251457 86251538 -98037124 + L1ME3A LINE L1 5391 5469 -2573 1921 208 75 66 chr4 86251631 86252179 -98036483 + MLT1E2 LTR MaLR 74 626 0 1611 253 54 63 chr4 86252198 86252612 -98036050 + L1ME3A LINE L1 5477 5893 -277 2082 114 10 7 chr4 86252612 86252910 -98035752 + AluSc SINE Alu 1 299 -10 2193 100 7 7 chr4 86252911 86253221 -98035441 + AluSg SINE Alu 1 310 0 1611 253 54 63 chr4 86253221 86253469 -98035193 + L1ME3A LINE L1 5892 6135 -35 213 213 22 0 chr4 86253531 86253580 -98035082 - MIR SINE MIR -84 124 54 23 33 0 0 chr4 86254260 86254290 -98034372 + AT_rich Low_complexity Low_complexity 1 30 0 387 0 0 0 chr4 86255031 86255074 -98033588 + (CA)n Simple_repeat Simple_repeat 2 44 0 1117 179 58 0 chr4 86255329 86255552 -98033110 - MER46A DNA MER2_type 0 236 1 408 236 34 91 chr4 86255939 86256147 -98032515 - MLT1K LTR MaLR -8 580 385 183 42 0 0 chr4 86256270 86256294 -98032368 + (A)n Simple_repeat Simple_repeat 1 24 0 823 205 12 18 chr4 86256797 86256963 -98031699 + FRAM SINE Alu 2 166 0 2206 108 3 7 chr4 86257201 86257496 -98031166 + AluSq SINE Alu 1 294 -19 1414 115 107 4 chr4 86258292 86258535 -98030127 + L1PB4 LINE L1 5709 5976 -180 28 0 0 0 chr4 86258871 86258899 -98029763 + AT_rich Low_complexity Low_complexity 1 28 0 1601 86 0 0 chr4 86259553 86259750 -98028912 + AluSc SINE Alu 99 295 -14 210 291 0 0 chr4 86259822 86259877 -98028785 - L2 LINE L2 -247 3066 3012 720 224 40 17 chr4 86260099 86260273 -98028389 - MER63A DNA MER1_type -26 184 7 209 290 0 0 chr4 86260313 86260375 -98028287 - L2 LINE L2 -702 2612 2551 375 269 60 27 chr4 86261526 86261616 -98027046 + MER69A DNA AcHobo 23 121 -2405 429 54 0 0 chr4 86261616 86261672 -98026990 + (TG)n Simple_repeat Simple_repeat 2 57 0 375 269 60 27 chr4 86261672 86261730 -98026932 + MER69A DNA AcHobo 121 176 -1 250 381 108 5 chr4 86261737 86261931 -98026731 + MER115 DNA AcHobo 5 218 -475 22 0 0 0 chr4 86262711 86262733 -98025929 + AT_rich Low_complexity Low_complexity 1 22 0 26 74 0 0 chr4 86263405 86263459 -98025203 + AT_rich Low_complexity Low_complexity 1 54 0 416 287 77 14 chr4 86264075 86264218 -98024444 - MIR SINE MIR -27 235 84 2341 102 0 0 chr4 86264251 86264555 -98024107 - AluSg SINE Alu 0 310 7 42876 51 2 1 chr4 86264899 86271046 -98017616 - L1PA4 LINE L1 0 6155 1 2139 120 0 42 chr4 86271055 86271412 -98017250 - L1PA13 LINE L1 -8 6155 5814 424 276 50 65 chr4 86272064 86272325 -98016337 + MLT1L LTR MaLR 124 380 -235 2206 105 0 0 chr4 86272448 86272734 -98015928 - AluSx SINE Alu -26 286 1 209 358 74 27 chr4 86272986 86273134 -98015528 + L2 LINE L2 3154 3308 -5 201 39 0 0 chr4 86273162 86273188 -98015474 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 1970 118 15 0 chr4 86273190 86273462 -98015200 - AluSc SINE Alu -33 276 1 2052 101 0 21 chr4 86273690 86274009 -98014653 - AluSx SINE Alu 0 314 2 20622 55 3 0 chr4 86275047 86278464 -98010198 - L1PA5 LINE L1 -4 6150 2729 11955 68 2 2 chr4 86278464 86280050 -98008612 + L1PA5 LINE L1 1165 2750 -3396 2342 83 17 3 chr4 86282219 86282520 -98006142 + AluSc SINE Alu 1 305 -4 409 37 0 0 chr4 86283472 86283526 -98005136 - AluSp/q SINE Alu -16 297 244 1609 168 0 84 chr4 86283574 86283943 -98004719 - MER44D DNA MER2_type -1 608 1 390 162 0 0 chr4 86284613 86284687 -98003975 + (TG)n Simple_repeat Simple_repeat 1 74 0 1540 203 10 0 chr4 86285863 86286153 -98002509 - AluSx SINE Alu -19 293 1 219 114 0 0 chr4 86286236 86286271 -98002391 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1880 160 123 21 chr4 86287633 86288014 -98000648 - MSTA LTR MaLR -8 420 1 2226 192 30 48 chr4 86288109 86288770 -97999892 - MER66-int LTR ERV1 -2700 2180 1519 1090 212 78 51 chr4 86288803 86288936 -97999726 - MER66-int LTR ERV1 -2505 4171 4043 2993 38 5 0 chr4 86288936 86289303 -97999359 - L1PA4 LINE L1 0 6155 5787 1090 212 78 51 chr4 86289303 86289754 -97998908 - MER66-int LTR ERV1 -2633 4043 1646 1347 191 22 11 chr4 86289758 86290031 -97998631 - MER66-int LTR ERV1 -282 1504 1229 633 175 58 0 chr4 86290040 86290160 -97998502 - MER66-int LTR ERV1 -5248 1428 1302 1647 190 75 115 chr4 86290197 86290840 -97997822 - MER66-int LTR ERV1 -5527 1149 533 1906 192 24 29 chr4 86291048 86291460 -97997202 - MER41B LTR ERV1 -144 491 82 195 317 37 0 chr4 86291569 86291651 -97997011 + L2 LINE L2 3186 3270 -2 2029 143 0 7 chr4 86292003 86292310 -97996352 + AluSx SINE Alu 1 305 -7 28 29 0 0 chr4 86293423 86293458 -97995204 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr4 86294273 86294310 -97994352 + AT_rich Low_complexity Low_complexity 1 37 0 1350 259 126 88 chr4 86296463 86296661 -97992001 - L2 LINE L2 -1165 2149 1960 2249 110 0 0 chr4 86296661 86296960 -97991702 + AluSc SINE Alu 3 301 -8 1350 259 126 88 chr4 86296960 86297190 -97991472 - L2 LINE L2 -1354 1960 1740 275 149 0 0 chr4 86297190 86297237 -97991425 - U5 snRNA snRNA -69 47 1 1350 259 126 88 chr4 86297237 86297576 -97991086 - L2 LINE L2 -1574 1740 1304 438 309 115 12 chr4 86297589 86297832 -97990830 + Charlie2 DNA MER1_type 32 299 -2483 776 234 100 75 chr4 86297859 86298367 -97990295 + Charlie2 DNA MER1_type 1887 2407 -455 1326 302 57 100 chr4 86298558 86299688 -97988974 - L2 LINE L2 -2007 1307 227 2029 106 39 0 chr4 86300127 86300409 -97988253 - AluSg SINE Alu -17 293 1 566 239 86 59 chr4 86300853 86301108 -97987554 - MIR SINE MIR 0 262 1 244 356 139 58 chr4 86301179 86301488 -97987174 - L2 LINE L2 -5 3267 2934 295 341 105 39 chr4 86301540 86301901 -97986761 - LTR33 LTR ERVL -11 510 126 546 326 192 44 chr4 86302018 86302229 -97986433 - L2 LINE L2 -500 2814 2636 2330 117 17 0 chr4 86302229 86302589 -97986073 - MER47A DNA MER2_type 0 366 1 546 326 192 44 chr4 86302589 86303018 -97985644 - L2 LINE L2 -678 2636 2079 180 302 48 0 chr4 86303032 86303095 -97985567 - MIR SINE MIR -48 214 149 312 27 0 0 chr4 86304404 86304441 -97984221 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 320 238 48 79 chr4 86304442 86304568 -97984094 - L2 LINE L2 -30 3283 3162 363 338 160 9 chr4 86305203 86305428 -97983234 + MIR SINE MIR 4 262 0 29 106 0 0 chr4 86305455 86305568 -97983094 + AT_rich Low_complexity Low_complexity 1 113 0 354 219 74 75 chr4 86306048 86306170 -97982492 + FLAM_A SINE Alu 2 114 -19 295 353 188 28 chr4 86307114 86307822 -97980840 + L2 LINE L2 1966 2786 -528 214 333 0 0 chr4 86308078 86308141 -97980521 + L2 LINE L2 3245 3307 -6 223 350 134 10 chr4 86308372 86308566 -97980096 - MIR SINE MIR -15 247 30 2250 107 0 0 chr4 86309713 86310022 -97978640 - AluSc SINE Alu 0 309 1 1280 193 16 4 chr4 86311025 86311279 -97977383 - AluJo SINE Alu -55 257 1 207 286 176 11 chr4 86311636 86311727 -97976935 + MIR SINE MIR 32 137 -125 4987 64 43 0 chr4 86311743 86312400 -97976262 - L1PA7 LINE L1 -3 6151 5467 2064 88 16 3 chr4 86312400 86312768 -97975894 + L1PA7 LINE L1 5103 5473 -681 1789 165 0 46 chr4 86314544 86314871 -97973791 - AluSx SINE Alu 0 312 1 30 27 0 0 chr4 86315266 86315303 -97973359 + AT_rich Low_complexity Low_complexity 1 37 0 259 366 24 16 chr4 86315437 86315560 -97973102 - L2 LINE L2 -12 3260 3137 3027 144 26 4 chr4 86315659 86316159 -97972503 - MER41E LTR ERV1 0 512 2 183 156 0 0 chr4 86317094 86317126 -97971536 + (CATA)n Simple_repeat Simple_repeat 4 35 0 238 295 211 71 chr4 86317451 86317831 -97970831 + L2 LINE L2 1692 2124 -1190 486 248 70 0 chr4 86317861 86317990 -97970672 - MER58B DNA MER1_type -8 333 196 2414 52 3 16 chr4 86318426 86318736 -97969926 - AluY SINE Alu -5 306 1 189 211 0 0 chr4 86319123 86319175 -97969487 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 2364 67 0 0 chr4 86319470 86319768 -97968894 - AluY SINE Alu -11 300 3 432 0 0 0 chr4 86319783 86319831 -97968831 + (TG)n Simple_repeat Simple_repeat 1 48 0 430 172 249 6 chr4 86320221 86320366 -97968296 + MER5A DNA MER1_type 4 189 0 27 29 0 0 chr4 86320475 86320509 -97968153 + AT_rich Low_complexity Low_complexity 1 34 0 754 196 0 0 chr4 86320644 86320777 -97967885 + AluJb SINE Alu 1 133 -179 294 228 152 0 chr4 86320964 86321056 -97967606 + L2 LINE L2 3191 3296 -17 2276 95 0 16 chr4 86321358 86321675 -97966987 - AluSx SINE Alu 0 312 1 192 356 40 10 chr4 86322028 86322129 -97966533 + MIR SINE MIR 43 146 -62 327 328 45 35 chr4 86322278 86322677 -97965985 - HAL1b LINE L1 -887 461 59 24 0 0 0 chr4 86324204 86324228 -97964434 + AT_rich Low_complexity Low_complexity 1 24 0 29 28 0 0 chr4 86324264 86324300 -97964362 + AT_rich Low_complexity Low_complexity 1 36 0 793 191 26 10 chr4 86324444 86324638 -97964024 + Charlie4 DNA MER1_type 1764 1960 -1 260 295 158 0 chr4 86324638 86324733 -97963929 + L2 LINE L2 3187 3296 -17 271 287 198 0 chr4 86324893 86324994 -97963668 + L2 LINE L2 3188 3308 -5 415 292 159 22 chr4 86326029 86326255 -97962407 + MIR SINE MIR 6 262 0 213 301 0 2 chr4 86326809 86326877 -97961785 + MIR SINE MIR 86 153 -55 23 0 0 0 chr4 86327368 86327391 -97961271 + AT_rich Low_complexity Low_complexity 1 23 0 670 231 90 41 chr4 86329235 86329503 -97959159 - LTR40b LTR ERVL -7 455 175 1506 249 31 75 chr4 86329613 86330159 -97958503 - MER77 LTR ERV1 -5 600 79 297 216 172 52 chr4 86330268 86330384 -97958278 - LTR40a LTR ERVL -389 130 1 24 0 0 0 chr4 86330767 86330791 -97957871 + AT_rich Low_complexity Low_complexity 1 24 0 365 250 19 19 chr4 86331175 86331283 -97957379 - MER103 DNA DNA 0 166 59 185 83 28 0 chr4 86332560 86332596 -97956066 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 261 222 0 0 chr4 86334071 86334134 -97954528 + (CATATA)n Simple_repeat Simple_repeat 2 64 0 181 391 20 53 chr4 86334228 86334379 -97954283 - MER5A DNA MER1_type -40 149 4 278 130 0 0 chr4 86336088 86336134 -97952528 + L1MA9 LINE L1 6262 6307 -5 261 0 0 0 chr4 86337019 86337048 -97951614 + (TC)n Simple_repeat Simple_repeat 2 30 0 195 42 0 0 chr4 86337047 86337071 -97951591 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 400 284 74 47 chr4 86337071 86337150 -97951512 + L2 LINE L2 3121 3196 -76 1096 181 17 125 chr4 86337150 86337559 -97951103 - MLT1A1 LTR MaLR 0 365 1 400 284 74 47 chr4 86337559 86337627 -97951035 + L2 LINE L2 3196 3272 0 1490 195 8 4 chr4 86337837 86338099 -97950563 - AluSq SINE Alu -50 263 1 2098 103 14 10 chr4 86338318 86338610 -97950052 - AluSc SINE Alu -16 293 1 267 274 24 16 chr4 86339343 86339423 -97949239 + L1ME LINE L1 5682 5765 -356 1562 192 3 29 chr4 86339423 86339736 -97948926 + AluJo SINE Alu 3 307 -5 267 274 24 16 chr4 86339736 86339779 -97948883 + L1ME LINE L1 5765 5806 -315 2097 148 78 22 chr4 86341772 86342183 -97946479 - Tigger2a DNA MER2_type 0 434 1 252 170 0 0 chr4 86342183 86342236 -97946426 + (TA)n Simple_repeat Simple_repeat 2 54 0 183 300 0 0 chr4 86343955 86343995 -97944667 - L2 LINE L2 -23 3249 3210 213 193 123 0 chr4 86344355 86344412 -97944250 - MIR SINE MIR -173 89 26 694 272 88 67 chr4 86344607 86344881 -97943781 - LTR16A LTR ERVL -32 418 151 1859 128 44 7 chr4 86344881 86345178 -97943484 + AluJb SINE Alu 1 308 -4 594 235 15 8 chr4 86345180 86345312 -97943350 + FLAM_A SINE Alu 1 133 0 694 272 88 67 chr4 86345312 86345376 -97943286 - LTR16A LTR ERVL -299 151 70 26 0 0 0 chr4 86345966 86345992 -97942670 + AT_rich Low_complexity Low_complexity 1 26 0 2273 100 0 6 chr4 86347248 86347559 -97941103 + AluSq SINE Alu 1 309 -4 194 0 39 0 chr4 86347872 86347898 -97940764 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1800 171 0 0 chr4 86347900 86348180 -97940482 - AluJb SINE Alu -32 280 1 26 0 0 0 chr4 86348184 86348210 -97940452 + AT_rich Low_complexity Low_complexity 1 26 0 181 51 51 51 chr4 86348411 86348450 -97940212 + T-rich Low_complexity Low_complexity 3 41 0 2198 108 0 0 chr4 86348456 86348752 -97939910 - AluSc SINE Alu -13 296 1 3712 184 26 0 chr4 86348755 86349482 -97939180 - L1MA6 LINE L1 -258 7461 6716 401 211 0 0 chr4 86349500 86349571 -97939091 - AluJ/FRAM SINE Alu -19 293 223 699 165 8 8 chr4 86349574 86349695 -97938967 - AluJo/FLAM SINE Alu -189 123 3 12448 196 48 35 chr4 86349696 86351207 -97937455 - L1MA6 LINE L1 -821 6744 5254 1774 119 58 41 chr4 86351207 86351500 -97937162 - AluSx SINE Alu -14 298 1 12448 196 48 35 chr4 86351500 86351946 -97936716 - L1MA6 LINE L1 -2311 5254 4815 2530 47 0 0 chr4 86351946 86352244 -97936418 - AluY SINE Alu -13 298 1 12448 196 48 35 chr4 86352244 86352650 -97936012 - L1MA6 LINE L1 -2750 4815 4416 1973 103 53 0 chr4 86352650 86352932 -97935730 - AluSp SINE Alu -16 297 1 1727 173 7 20 chr4 86352937 86353237 -97935425 - AluJb SINE Alu -4 308 13 12448 196 48 35 chr4 86353237 86354102 -97934560 - L1MA6 LINE L1 -3152 4413 3464 1952 99 62 17 chr4 86354102 86354394 -97934268 - AluSx SINE Alu -7 305 1 12448 196 48 35 chr4 86354394 86354582 -97934080 - L1MA6 LINE L1 -4101 3464 3280 611 384 22 26 chr4 86354734 86355224 -97933438 + L1PA13 LINE L1 97 584 -6203 4789 147 8 18 chr4 86356282 86357111 -97931551 + L1PA16 LINE L1 5346 6166 0 2361 268 91 24 chr4 86357148 86357917 -97930745 - L1MA6 LINE L1 -4332 3233 2360 198 0 0 0 chr4 86357917 86357939 -97930723 + (TTA)n Simple_repeat Simple_repeat 3 24 0 2361 268 91 24 chr4 86357939 86358318 -97930344 - L1MA6 LINE L1 -5205 2360 2008 1515 297 73 12 chr4 86358389 86359045 -97929617 - L1MA6 LINE L1 -6320 1169 474 23 0 0 0 chr4 86359364 86359387 -97929275 + AT_rich Low_complexity Low_complexity 1 23 0 2844 16 0 0 chr4 86359595 86359911 -97928751 - AluYb8 SINE Alu -2 316 1 336 356 10 0 chr4 86359949 86360050 -97928612 + L2 LINE L2 3156 3257 -15 35 0 0 0 chr4 86360052 86360087 -97928575 + AT_rich Low_complexity Low_complexity 1 35 0 1531 216 43 38 chr4 86360494 86360888 -97927774 - MSTD LTR MaLR 0 396 1 348 268 189 25 chr4 86361134 86361526 -97927136 - HAL1 LINE L1 -931 1576 1121 5025 178 25 15 chr4 86361544 86362560 -97926102 - L1MC1 LINE L1 0 6333 5308 2069 215 6 43 chr4 86362558 86363047 -97925615 - L1MCa LINE L1 -5955 471 1 * 25 51 0 0 chr4 86363136 86363175 -97925487 + AT_rich Low_complexity Low_complexity 1 39 0 1151 255 74 48 chr4 86363510 86364099 -97924563 - MLT1D LTR MaLR 0 505 7 25 31 0 0 chr4 86364161 86364193 -97924469 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr4 86364374 86364402 -97924260 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr4 86364411 86364442 -97924220 + AT_rich Low_complexity Low_complexity 1 31 0 328 366 0 0 chr4 86365576 86365677 -97922985 + MIR SINE MIR 32 132 -130 1262 220 53 95 chr4 86365679 86366057 -97922605 - MER77 LTR ERV1 -241 364 3 189 121 0 0 chr4 86366843 86366876 -97921786 + (TG)n Simple_repeat Simple_repeat 1 33 0 22 0 0 0 chr4 86366898 86366920 -97921742 + AT_rich Low_complexity Low_complexity 1 22 0 549 226 148 78 chr4 86367446 86367689 -97920973 - MER77 LTR ERV1 -343 262 3 2188 99 3 0 chr4 86368515 86368809 -97919853 - AluSx SINE Alu -17 295 1 1442 211 85 85 chr4 86369365 86369987 -97918675 + MLT1E3 LTR MaLR 2 623 -1 1025 255 33 15 chr4 86370221 86370655 -97918007 + L1ME LINE L1 5141 5588 -576 220 328 69 15 chr4 86371181 86371312 -97917350 - MIR SINE MIR 0 262 125 1501 168 141 7 chr4 86371382 86371679 -97916983 + MER1B DNA MER1_type 1 337 -2 811 201 61 30 chr4 86371735 86371998 -97916664 - LTR37B LTR ERV1 0 468 198 1885 213 68 27 chr4 86372182 86372665 -97915997 + MLT1D LTR MaLR 1 503 -2 1617 105 5 0 chr4 86372674 86372893 -97915769 + AluSc SINE Alu 1 220 -89 3691 183 48 4 chr4 86373195 86373921 -97914741 - Tigger1 DNA MER2_type 0 2418 1661 255 133 0 0 chr4 86373925 86373970 -97914692 - Tigger1 DNA MER2_type -1609 809 765 * 1798 130 48 39 chr4 86373967 86374298 -97914364 + THE1B LTR MaLR 29 362 -2 27 62 0 0 chr4 86374680 86374728 -97913934 + AT_rich Low_complexity Low_complexity 1 48 0 1824 159 0 26 chr4 86375335 86375637 -97913025 + AluSx SINE Alu 1 294 -18 2164 118 0 0 chr4 86375641 86375937 -97912725 + AluSq SINE Alu 1 296 -17 5213 117 19 0 chr4 86375937 86376721 -97911941 - L1P LINE L1 -1289 4857 4059 5976 95 2 0 chr4 86376721 86377548 -97911114 + L1PA8 LINE L1 5328 6163 -9 1748 108 11 56 chr4 86378633 86378969 -97909693 - MER51B LTR ERV1 0 377 2 402 342 17 0 chr4 86379176 86379296 -97909366 + L2 LINE L2 3138 3259 -13 180 313 30 15 chr4 86379236 86379303 -97909359 + MIR SINE MIR 194 261 -1 * 22 56 0 0 chr4 86380311 86380347 -97908315 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr4 86381133 86381156 -97907506 + AT_rich Low_complexity Low_complexity 1 23 0 642 257 38 22 chr4 86381280 86381463 -97907199 - MER5A DNA MER1_type -2 187 2 22 103 0 0 chr4 86381569 86381647 -97907015 + AT_rich Low_complexity Low_complexity 1 78 0 22 56 0 0 chr4 86382088 86382124 -97906538 + AT_rich Low_complexity Low_complexity 1 36 0 493 244 77 0 chr4 86382725 86382881 -97905781 - L1MA10 LINE L1 0 6334 6167 3826 198 47 52 chr4 86382895 86383614 -97905048 - L1MA9 LINE L1 -38 6274 5560 1071 36 15 0 chr4 86383614 86383751 -97904911 - L1PA4 LINE L1 0 6155 6017 3826 198 47 52 chr4 86383751 86384026 -97904636 - L1MA9 LINE L1 -752 5560 5285 2150 273 50 24 chr4 86384141 86384515 -97904147 - L1M2a LINE L1 -6477 691 290 1576 173 54 40 chr4 86384515 86384885 -97903777 + THE1C LTR MaLR 1 375 0 2150 273 50 24 chr4 86384885 86385183 -97903479 - L1M2a LINE L1 -6878 290 1 2233 237 84 11 chr4 86385183 86385981 -97902681 - L1ME1 LINE L1 -136 6030 5177 2049 244 96 7 chr4 86385976 86386627 -97902035 - L1ME1 LINE L1 -1407 4739 4013 * 201 74 0 0 chr4 86386627 86386654 -97902008 + (TG)n Simple_repeat Simple_repeat 2 28 0 2049 244 96 7 chr4 86386654 86386744 -97901918 - L1ME1 LINE L1 -2133 4013 3932 2036 255 86 29 chr4 86386804 86387780 -97900882 - L1ME1 LINE L1 -2905 3241 2210 446 308 99 64 chr4 86387951 86388287 -97900375 - LTR40a LTR ERVL -60 402 114 250 250 42 14 chr4 86388369 86388441 -97900221 - LTR40a LTR ERVL -445 74 1 440 261 55 18 chr4 86388954 86389119 -97899543 - L1MC/D LINE L1 -2081 5727 5557 404 336 78 37 chr4 86389356 86389573 -97899089 - MIR SINE MIR -17 245 20 462 293 34 67 chr4 86389680 86389888 -97898774 + MIR SINE MIR 21 221 -41 2686 164 59 61 chr4 86389923 86390677 -97897985 + LTR12 LTR ERV1 31 583 -131 841 223 132 35 chr4 86391562 86391872 -97896790 - MER7A DNA MER2_type -2 344 7 2487 151 62 5 chr4 86392690 86393127 -97895535 - MLT1C LTR MaLR -2 465 4 612 266 58 21 chr4 86393503 86393691 -97894971 - MLT1E1 LTR MaLR -73 581 387 677 157 41 8 chr4 86393808 86393929 -97894733 - MLT1E1 LTR MaLR -523 131 7 25 31 0 0 chr4 86394472 86394504 -97894158 + AT_rich Low_complexity Low_complexity 1 32 0 2317 57 0 3 chr4 86395314 86395647 -97893015 + AluY SINE Alu 1 332 0 2001 110 3 64 chr4 86396215 86396542 -97892120 - AluSq SINE Alu -6 307 1 228 211 41 32 chr4 86397037 86397160 -97891502 + (TA)n Simple_repeat Simple_repeat 1 124 0 563 284 8 0 chr4 86398638 86398772 -97889890 - MER45A DNA AcHobo 0 178 44 713 88 0 0 chr4 86398909 86399000 -97889662 - Tigger1 DNA MER2_type -845 1573 1483 13507 137 49 12 chr4 86399285 86401615 -97887047 + Tigger1 DNA MER2_type 3 2418 0 1869 149 0 13 chr4 86401744 86402027 -97886635 + AluSx SINE Alu 3 283 -29 504 0 0 0 chr4 86402027 86402083 -97886579 + (CA)n Simple_repeat Simple_repeat 1 56 0 1869 149 0 13 chr4 86402083 86402100 -97886562 + AluSx SINE Alu 283 299 -13 203 235 59 0 chr4 86402276 86402327 -97886335 + MIR SINE MIR 17 70 -192 24 0 0 0 chr4 86405440 86405464 -97883198 + AT_rich Low_complexity Low_complexity 1 24 0 225 279 51 13 chr4 86405498 86405577 -97883085 - L3b LINE CR1 -209 1374 1293 222 308 214 8 chr4 86405633 86405750 -97882912 + MIR3 SINE MIR 21 161 -47 228 206 0 95 chr4 86405810 86405873 -97882789 - L2 LINE L2 -48 3224 3168 237 252 46 84 chr4 86405992 86406123 -97882539 - MLT1L LTR MaLR -5 610 485 1860 146 0 28 chr4 86406141 86406462 -97882200 - AluSx SINE Alu 0 312 1 345 221 68 46 chr4 86406764 86407114 -97881548 - L1MCc LINE L1 -4887 1536 1376 495 317 50 55 chr4 86407554 86407613 -97881049 - L2 LINE L2 -236 3077 3019 5806 46 4 1 chr4 86407613 86408337 -97880325 - L1PA5 LINE L1 -1 6153 5428 495 317 50 55 chr4 86408337 86408367 -97880295 - L2 LINE L2 -294 3019 2990 2305 74 0 23 chr4 86408367 86408677 -97879985 - AluY SINE Alu -8 303 1 495 317 50 55 chr4 86408677 86408898 -97879764 - L2 LINE L2 -323 2990 2765 22 35 0 0 chr4 86411391 86411420 -97877242 + AT_rich Low_complexity Low_complexity 1 29 0 811 279 9 5 chr4 86411989 86412208 -97876454 + MIR SINE MIR 43 262 0 400 295 9 0 chr4 86412324 86412429 -97876233 + MIR SINE MIR 157 262 0 25 0 0 0 chr4 86412619 86412644 -97876018 + AT_rich Low_complexity Low_complexity 1 25 0 26 64 0 0 chr4 86412742 86412789 -97875873 + AT_rich Low_complexity Low_complexity 1 47 0 954 92 0 0 chr4 86413050 86413170 -97875492 + AluY SINE Alu 9 128 -183 454 113 0 0 chr4 86413170 86413241 -97875421 + Alu SINE Alu 234 304 -8 416 316 30 18 chr4 86413623 86413791 -97874871 + MIR3 SINE MIR 36 205 -3 2260 123 31 17 chr4 86414624 86414983 -97873679 - THE1B LTR MaLR 0 364 1 1142 228 123 15 chr4 86415074 86415465 -97873197 - MER63B DNA MER1_type -2 434 2 24 0 0 0 chr4 86415737 86415761 -97872901 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr4 86416134 86416157 -97872505 + AT_rich Low_complexity Low_complexity 1 23 0 2267 67 0 0 chr4 86416213 86416537 -97872125 - AluY SINE Alu 0 324 1 1856 148 97 6 chr4 86417052 86417383 -97871279 + MER46B DNA MER2_type 1 236 0 30 45 0 0 chr4 86417807 86417851 -97870811 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr4 86419392 86419414 -97869248 + AT_rich Low_complexity Low_complexity 1 22 0 2926 284 116 16 chr4 86420200 86420991 -97867671 + L1M4 LINE L1 2259 2970 -3176 1340 149 41 0 chr4 86420991 86421259 -97867403 + L1MA4 LINE L1 6017 6295 -5 2926 284 116 16 chr4 86421259 86422350 -97866312 + L1M4 LINE L1 2970 4314 -1832 1736 246 68 27 chr4 86422351 86422864 -97865798 - MLT1F LTR MaLR -6 536 3 295 263 20 30 chr4 86422876 86422975 -97865687 - MLT1F-int LTR MaLR -30 1341 1244 225 303 61 48 chr4 86423231 86423396 -97865266 - MLT1F-int LTR MaLR -487 884 718 28 29 0 0 chr4 86423564 86423599 -97865063 + AT_rich Low_complexity Low_complexity 1 35 0 252 276 0 0 chr4 86423609 86423667 -97864995 + L1ME2 LINE L1 6063 6120 -44 351 286 131 30 chr4 86424186 86424385 -97864277 + MIR SINE MIR 3 221 -41 185 108 27 0 chr4 86424520 86424557 -97864105 + (TA)n Simple_repeat Simple_repeat 2 39 0 40 49 0 0 chr4 86424629 86424690 -97863972 + AT_rich Low_complexity Low_complexity 1 61 0 907 319 145 18 chr4 86424849 86425470 -97863192 - L2 LINE L2 -703 2611 1912 375 285 8 73 chr4 86425868 86425899 -97862763 + MIR SINE MIR 3 34 -228 2096 125 23 49 chr4 86425899 86426284 -97862378 + THE1C LTR MaLR 1 375 0 375 285 8 73 chr4 86426284 86426375 -97862287 + MIR SINE MIR 34 117 -145 23 33 0 0 chr4 86426476 86426506 -97862156 + AT_rich Low_complexity Low_complexity 1 30 0 1580 162 7 61 chr4 86427906 86428203 -97860459 + AluJo SINE Alu 6 286 -26 180 77 0 0 chr4 86428203 86428229 -97860433 + (CATA)n Simple_repeat Simple_repeat 2 27 0 733 227 49 11 chr4 86428497 86428682 -97859980 - MER58A DNA MER1_type -1 223 32 569 314 100 5 chr4 86428768 86428988 -97859674 + MIR SINE MIR 22 262 0 1755 149 97 0 chr4 86429468 86429797 -97858865 - MER46B DNA MER2_type 0 236 1 2257 106 34 42 chr4 86429803 86430144 -97858518 - L1PA10 LINE L1 0 6168 5829 2155 131 0 0 chr4 86430144 86430449 -97858213 + AluSq SINE Alu 1 305 -8 2257 106 34 42 chr4 86430449 86430485 -97858177 - L1PA10 LINE L1 -339 5829 5794 752 117 0 8 chr4 86433562 86433690 -97854972 + (GAAA)n Simple_repeat Simple_repeat 3 129 0 1800 161 104 3 chr4 86433809 86434163 -97854499 + MLT1B LTR MaLR 1 390 0 1585 224 19 16 chr4 86434675 86435045 -97853617 + MLT1A2 LTR MaLR 4 374 0 888 115 31 0 chr4 86435169 86435299 -97853363 + AluSg1 SINE Alu 1 134 -175 2023 101 0 7 chr4 86435299 86435601 -97853061 + AluSg SINE Alu 21 310 0 522 304 13 25 chr4 86436248 86436406 -97852256 + MIR SINE MIR 2 157 -105 3764 66 6 2 chr4 86436555 86437043 -97851619 + L1PA7 LINE L1 5665 6154 0 1160 266 62 58 chr4 86437045 86437462 -97851200 + LTR40a LTR ERVL 97 515 -4 22 35 0 0 chr4 86437496 86437525 -97851137 + AT_rich Low_complexity Low_complexity 1 29 0 2805 146 115 31 chr4 86437809 86438383 -97850279 + LTR29 LTR ERV1 1 622 0 25 0 0 0 chr4 86438870 86438895 -97849767 + AT_rich Low_complexity Low_complexity 1 25 0 1862 140 184 11 chr4 86439145 86439510 -97849152 - MSTA LTR MaLR 0 428 1 24 0 0 0 chr4 86440187 86440211 -97848451 + AT_rich Low_complexity Low_complexity 1 24 0 22 80 0 0 chr4 86440298 86440348 -97848314 + AT_rich Low_complexity Low_complexity 1 50 0 523 279 65 33 chr4 86441578 86442201 -97846461 - L1MDb LINE L1 -3569 3075 2463 270 289 12 0 chr4 86442408 86442491 -97846171 - L1MDb LINE L1 -4642 2183 2100 292 275 65 47 chr4 86442787 86443105 -97845557 - L1MDb LINE L1 -4955 1587 1321 1919 164 3 3 chr4 86443166 86443477 -97845185 + AluSx SINE Alu 1 311 -1 262 309 236 0 chr4 86444640 86444805 -97843857 + MIR SINE MIR 17 220 -42 220 274 0 0 chr4 86444834 86444885 -97843777 + (CACCAT)n Simple_repeat Simple_repeat 6 56 0 21 36 0 0 chr4 86445088 86445116 -97843546 + AT_rich Low_complexity Low_complexity 1 28 0 908 144 77 0 chr4 86445162 86445343 -97843319 - L1PB4 LINE L1 -691 5465 5271 2585 133 14 18 chr4 86445354 86445797 -97842865 + L1PB4 LINE L1 5475 5915 -241 197 233 190 17 chr4 86446203 86446319 -97842343 + MIR SINE MIR 116 251 -11 268 290 12 86 chr4 86446751 86447014 -97841648 + L3b LINE CR1 1112 1437 -146 21 0 0 0 chr4 86447249 86447270 -97841392 + AT_rich Low_complexity Low_complexity 1 21 0 2152 114 3 0 chr4 86447333 86447641 -97841021 - AluY SINE Alu -2 309 1 24 0 0 0 chr4 86448034 86448058 -97840604 + AT_rich Low_complexity Low_complexity 1 24 0 310 341 67 7 chr4 86448579 86448714 -97839948 - MIR SINE MIR -72 190 48 654 197 54 27 chr4 86448845 86448992 -97839670 - FRAM SINE Alu -25 151 1 27 49 0 0 chr4 86449862 86449903 -97838759 + AT_rich Low_complexity Low_complexity 1 41 0 2135 105 3 0 chr4 86449963 86450248 -97838414 + AluSp SINE Alu 1 286 -27 2375 73 7 0 chr4 86450664 86450965 -97837697 - AluY SINE Alu -8 303 1 194 365 0 0 chr4 86450985 86451048 -97837614 - L2 LINE L2 -336 2977 2915 1708 223 38 91 chr4 86451059 86451717 -97836945 - MLT1E2 LTR MaLR -1 625 3 234 382 87 24 chr4 86451996 86452250 -97836412 - L2 LINE L2 -2889 425 156 628 255 109 16 chr4 86452484 86452668 -97835994 + MIR SINE MIR 2 202 -60 3344 67 2 0 chr4 86452696 86453129 -97835533 - L1PA7 LINE L1 -8 6146 5713 320 252 264 16 chr4 86454380 86454626 -97834036 + L1ME4a LINE L1 5809 6115 -6 1302 223 68 31 chr4 86455595 86455977 -97832685 - LTR16A1 LTR ERVL 0 457 62 26 0 0 0 chr4 86456129 86456155 -97832507 + AT_rich Low_complexity Low_complexity 1 26 0 8370 139 30 11 chr4 86456221 86458529 -97830133 - Tigger1 DNA MER2_type 0 2418 7 2954 185 88 12 chr4 86458933 86459593 -97829069 - MER67C LTR ERV1 0 710 1 24 77 0 0 chr4 86459940 86459992 -97828670 + AT_rich Low_complexity Low_complexity 1 52 0 641 274 38 56 chr4 86460325 86460591 -97828071 + MIR SINE MIR 2 262 0 234 62 0 0 chr4 86460980 86461012 -97827650 + (T)n Simple_repeat Simple_repeat 1 32 0 209 0 0 143 chr4 86461028 86461070 -97827592 + (T)n Simple_repeat Simple_repeat 1 36 0 360 298 19 19 chr4 86461070 86461335 -97827327 - L1HS LINE L1 0 6155 5891 42971 29 21 1 chr4 86461435 86467434 -97821228 - L1HS LINE L1 -32 6123 1 290 274 34 75 chr4 86468140 86468286 -97820376 - MLT1I LTR MaLR 0 409 270 30 59 0 0 chr4 86468508 86468559 -97820103 + AT_rich Low_complexity Low_complexity 1 51 0 21 36 0 0 chr4 86468811 86468839 -97819823 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr4 86469357 86469381 -97819281 + AT_rich Low_complexity Low_complexity 1 24 0 188 290 210 0 chr4 86469955 86470079 -97818583 + MIR SINE MIR 100 249 -13 1956 114 50 53 chr4 86470339 86470700 -97817962 + THE1B LTR MaLR 1 360 -4 227 293 160 27 chr4 86470798 86470986 -97817676 - MLT1L LTR MaLR -95 520 308 226 245 20 0 chr4 86473975 86474024 -97814638 + (TG)n Simple_repeat Simple_repeat 2 51 0 652 306 27 15 chr4 86475291 86475552 -97813110 - LTR16A1 LTR ERVL -5 452 189 374 316 138 6 chr4 86476610 86476784 -97811878 + MIR SINE MIR 54 250 -12 450 253 22 39 chr4 86477087 86477269 -97811393 + (TA)n Simple_repeat Simple_repeat 2 180 0 225 233 0 17 chr4 86477280 86477340 -97811322 - L1MCa LINE L1 -4362 2064 2006 * 257 270 22 11 chr4 86477292 86477381 -97811281 + L1MC4 LINE L1 6614 6703 -1339 1434 124 5 0 chr4 86477385 86477594 -97811068 - L1PA15 LINE L1 -16 6149 5940 26 30 0 0 chr4 86477646 86477679 -97810983 + AT_rich Low_complexity Low_complexity 1 33 0 315 0 0 0 chr4 86477712 86477747 -97810915 + (TA)n Simple_repeat Simple_repeat 2 36 0 334 224 34 129 chr4 86478825 86478972 -97809690 - MIR SINE MIR -5 257 125 231 256 218 13 chr4 86479329 86479407 -97809255 + MIR SINE MIR 52 145 -63 262 219 0 24 chr4 86479534 86479616 -97809046 + GA-rich Low_complexity Low_complexity 4 83 0 305 24 24 0 chr4 86480462 86480504 -97808158 + (TG)n Simple_repeat Simple_repeat 2 44 0 291 104 0 0 chr4 86480714 86480762 -97807900 + (TA)n Simple_repeat Simple_repeat 2 49 0 242 252 93 19 chr4 86481182 86481289 -97807373 - MIR3 SINE MIR -7 201 87 27 29 0 0 chr4 86481643 86481677 -97806985 + AT_rich Low_complexity Low_complexity 1 34 0 638 261 71 24 chr4 86482335 86482546 -97806116 - MIR SINE MIR -2 260 40 330 333 40 23 chr4 86482802 86482976 -97805686 + MER5A DNA MER1_type 7 183 -6 232 103 190 17 chr4 86484381 86484439 -97804223 - LTR48 LTR ERV1 -40 747 680 1780 141 15 0 chr4 86484512 86484782 -97803880 + AluJo SINE Alu 13 286 -26 1394 194 0 4 chr4 86484860 86485097 -97803565 + AluSx SINE Alu 2 237 -75 1413 212 4 0 chr4 86485390 86485645 -97803017 + MLT1A1 LTR MaLR 1 256 -109 30160 63 4 1 chr4 86485665 86491790 -97796872 - L1PA5 LINE L1 0 6154 11 710 186 0 0 chr4 86491795 86491913 -97796749 + MLT1A1 LTR MaLR 247 364 -1 820 217 12 0 chr4 86491961 86492127 -97796535 + AluJo SINE Alu 121 288 -24 23 54 0 0 chr4 86492130 86492167 -97796495 + AT_rich Low_complexity Low_complexity 1 37 0 859 328 48 26 chr4 86492611 86492962 -97795700 + L2 LINE L2 425 783 -2531 799 274 43 72 chr4 86492980 86493356 -97795306 + L2 LINE L2 2303 2667 -647 306 217 113 67 chr4 86493371 86493496 -97795166 - MLT1E LTR MaLR -418 128 1 9994 178 10 19 chr4 86494951 86499688 -97788974 - L1PA11 LINE L1 -4 7608 2718 574 216 0 9 chr4 86499697 86499813 -97788849 - L1PA11 LINE L1 -7458 123 9 24 32 0 0 chr4 86499844 86499875 -97788787 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr4 86500676 86500699 -97787963 + AT_rich Low_complexity Low_complexity 1 23 0 706 294 156 0 chr4 86501388 86501657 -97787005 + L1MC4 LINE L1 5497 5807 -2001 201 250 0 0 chr4 86501735 86501795 -97786867 + (TA)n Simple_repeat Simple_repeat 2 61 0 1746 164 14 0 chr4 86502235 86502521 -97786141 + MER7A DNA MER2_type 58 345 -1 366 373 108 11 chr4 86502744 86503012 -97785650 - MLT1K LTR MaLR -287 301 8 242 253 0 12 chr4 86503404 86503487 -97785175 + L1MC4 LINE L1 6615 6696 -1346 3165 218 72 47 chr4 86504449 86504705 -97783957 - L1MC3 LINE L1 -1 7784 7536 3013 135 37 4 chr4 86504705 86505215 -97783447 + MER1A DNA MER1_type 1 527 0 3165 218 72 47 chr4 86505215 86506011 -97782651 - L1MC3 LINE L1 -249 7536 6705 21 0 0 0 chr4 86506019 86506040 -97782622 + AT_rich Low_complexity Low_complexity 1 21 0 33 0 0 0 chr4 86506174 86506207 -97782455 + AT_rich Low_complexity Low_complexity 1 33 0 562 56 0 0 chr4 86506220 86506291 -97782371 - LTR17 LTR ERV1 -454 326 256 24 0 0 0 chr4 86509089 86509113 -97779549 + AT_rich Low_complexity Low_complexity 1 24 0 26 74 0 0 chr4 86509480 86509534 -97779128 + AT_rich Low_complexity Low_complexity 1 54 0 24 53 0 0 chr4 86509947 86509985 -97778677 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr4 86511994 86512020 -97776642 + AT_rich Low_complexity Low_complexity 1 26 0 363 333 35 20 chr4 86512424 86512622 -97776040 + MER102b DNA MER1_type 93 293 -48 685 186 0 0 chr4 86514232 86514350 -97774312 + FLAM_C SINE Alu 1 118 -15 653 256 97 24 chr4 86514686 86514893 -97773769 + MIR SINE MIR 41 262 0 2178 78 0 3 chr4 86515273 86515589 -97773073 + AluY SINE Alu 1 315 0 1068 329 96 8 chr4 86516121 86516893 -97771769 - L2 LINE L2 -19 3294 2454 320 278 119 40 chr4 86517471 86517676 -97770986 - MLT1G LTR MaLR -22 527 327 306 0 0 0 chr4 86517707 86517741 -97770921 + (TC)n Simple_repeat Simple_repeat 1 34 0 480 220 58 42 chr4 86517765 86517970 -97770692 - MLT1G LTR MaLR -275 320 100 287 266 51 0 chr4 86517977 86518056 -97770606 - MER68 LTR ERV1 0 562 480 1011 203 25 104 chr4 86518057 86518383 -97770279 - MER68 LTR ERV1 -220 342 43 11800 182 32 24 chr4 86518396 86519811 -97768851 - L1MA3 LINE L1 -330 7394 5991 1913 91 0 0 chr4 86519811 86520064 -97768598 - AluY SINE Alu -18 293 41 11800 182 32 24 chr4 86520064 86525738 -97762924 - L1MA3 LINE L1 -1733 5991 13 22 35 0 0 chr4 86525910 86525939 -97762723 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 86526084 86526112 -97762550 + AT_rich Low_complexity Low_complexity 1 28 0 1494 163 143 51 chr4 86527472 86527828 -97760834 - MSTA LTR MaLR -39 389 1 1474 241 23 11 chr4 86527878 86528235 -97760427 + MLT1A1 LTR MaLR 1 393 -3 21 71 0 0 chr4 86528457 86528499 -97760163 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr4 86529997 86530019 -97758643 + AT_rich Low_complexity Low_complexity 1 22 0 1710 166 91 16 chr4 86530134 86530441 -97758221 + MER1B DNA MER1_type 1 330 -9 26 0 0 0 chr4 86530485 86530511 -97758151 + AT_rich Low_complexity Low_complexity 1 26 0 1504 209 34 59 chr4 86530540 86530980 -97757682 - MLT1D LTR MaLR -2 503 75 2419 56 0 34 chr4 86531217 86531538 -97757124 - AluY SINE Alu -1 310 1 200 318 24 24 chr4 86531558 86531643 -97757019 + L2 LINE L2 2969 3053 -219 208 349 37 9 chr4 86531702 86531811 -97756851 + L2 LINE L2 3169 3280 -33 935 330 74 38 chr4 86531926 86532609 -97756053 + L2 LINE L2 2591 3298 -15 614 295 46 64 chr4 86533126 86533607 -97755055 - MLT1J LTR MaLR -37 474 3 1919 142 0 7 chr4 86534280 86534575 -97754087 + AluSx SINE Alu 1 293 -19 219 404 26 26 chr4 86535055 86535169 -97753493 + L2 LINE L2 3154 3267 -5 1509 159 92 4 chr4 86535467 86535900 -97752762 - LTR54 LTR ERV1 -5 493 1 2112 100 7 0 chr4 86536265 86536556 -97752106 - AluSp SINE Alu -3 310 18 707 261 15 20 chr4 86537811 86538006 -97750656 + MER63A DNA MER1_type 7 200 -10 31 82 0 0 chr4 86538278 86538351 -97750311 + AT_rich Low_complexity Low_complexity 1 73 0 239 361 82 0 chr4 86539002 86539099 -97749563 + MIR SINE MIR 6 110 -152 401 418 16 33 chr4 86539123 86539367 -97749295 - L2 LINE L2 -53 3219 2980 2620 108 19 3 chr4 86540399 86540768 -97747894 + THE1C LTR MaLR 1 375 0 226 295 36 48 chr4 86540842 86541008 -97747654 + L2 LINE L2 2623 2786 -528 893 188 143 52 chr4 86541065 86541373 -97747289 + MLT1D LTR MaLR 1 336 -169 228 86 0 0 chr4 86544389 86544424 -97744238 + (TG)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chr4 86544776 86544800 -97743862 + AT_rich Low_complexity Low_complexity 1 24 0 879 172 57 6 chr4 86544829 86544986 -97743676 + FRAM SINE Alu 1 161 -15 1425 154 92 22 chr4 86546017 86546289 -97742373 - AluJb SINE Alu -21 291 1 1127 261 127 42 chr4 86546314 86546809 -97741853 + MLT1F LTR MaLR 1 537 -5 229 182 55 18 chr4 86546825 86546880 -97741782 + MLT1F-int LTR MaLR 15 71 -1664 750 277 40 22 chr4 86546998 86547276 -97741386 + MLT1F-int LTR MaLR 319 601 -770 608 309 60 100 chr4 86547500 86548183 -97740479 + MLT1F-int LTR MaLR 692 1347 -24 675 235 82 70 chr4 86548219 86548672 -97739990 + MLT1F LTR MaLR 22 542 0 228 67 0 0 chr4 86549902 86549932 -97738730 + (A)n Simple_repeat Simple_repeat 1 30 0 2099 118 3 0 chr4 86551295 86551582 -97737080 + AluSp SINE Alu 1 288 -25 212 330 68 34 chr4 86554281 86554399 -97734263 + MIR3 SINE MIR 38 159 -49 256 270 109 23 chr4 86554400 86554574 -97734088 - MER113 DNA MER1_type? 0 521 333 691 229 24 91 chr4 86554947 86555157 -97733505 - MIR SINE MIR -2 260 65 224 233 0 0 chr4 86555298 86555341 -97733321 + L2 LINE L2 3262 3304 -9 2293 96 7 3 chr4 86555411 86555713 -97732949 + AluSx SINE Alu 2 304 -8 324 259 42 63 chr4 86555918 86556061 -97732601 + MIR SINE MIR 78 217 -45 215 219 0 0 chr4 86556284 86556325 -97732337 + L2 LINE L2 3263 3303 -10 583 309 110 49 chr4 86558071 86558462 -97730200 + MLT1L LTR MaLR 201 615 0 2149 152 80 12 chr4 86559169 86559570 -97729092 - MSTA LTR MaLR 0 428 1 300 286 83 23 chr4 86560661 86560794 -97727868 - L2 LINE L2 0 3313 3173 2012 84 11 0 chr4 86561009 86561283 -97727379 - AluY SINE Alu -1 310 34 1473 105 0 38 chr4 86561284 86561494 -97727168 - AluSg/x SINE Alu -26 286 85 2162 256 16 76 chr4 86561521 86562294 -97726368 + L1MCb LINE L1 8 733 -5312 1577 125 49 8 chr4 86562988 86563252 -97725410 - Tigger2 DNA MER2_type 0 2718 2444 229 245 0 0 chr4 86563353 86563402 -97725260 + (CGGGG)n Simple_repeat Simple_repeat 1 49 0 10666 207 66 17 chr4 86563411 86565817 -97722845 - L1PA13 LINE L1 -4236 2561 27 665 179 9 0 chr4 86565974 86566086 -97722576 - AluJb SINE Alu -185 127 15 25 0 0 0 chr4 86566562 86566587 -97722075 + AT_rich Low_complexity Low_complexity 1 25 0 23 54 0 0 chr4 86567368 86567405 -97721257 + AT_rich Low_complexity Low_complexity 1 37 0 2081 123 3 0 chr4 86567637 86567929 -97720733 + AluSg SINE Alu 1 293 -17 295 98 33 0 chr4 86567939 86568000 -97720662 + (TA)n Simple_repeat Simple_repeat 1 63 0 22 0 0 0 chr4 86568284 86568306 -97720356 + AT_rich Low_complexity Low_complexity 1 22 0 6731 75 0 1 chr4 86568915 86570329 -97718333 - L1PA7 LINE L1 -3 6151 4737 21 95 0 0 chr4 86570664 86570727 -97717935 + AT_rich Low_complexity Low_complexity 1 63 0 864 265 91 83 chr4 86570813 86571342 -97717320 - MLT1H1 LTR MaLR -22 533 1 22 0 0 0 chr4 86571439 86571461 -97717201 + AT_rich Low_complexity Low_complexity 1 22 0 473 128 26 0 chr4 86571736 86571814 -97716848 - MADE1 DNA Mariner 0 80 1 238 204 20 0 chr4 86572557 86572606 -97716056 + CT-rich Low_complexity Low_complexity 4 53 0 220 327 12 16 chr4 86572802 86572889 -97715773 - MIR SINE MIR -88 120 38 285 291 53 0 chr4 86573158 86573240 -97715422 + FRAM/FAM SINE Alu 1 73 -93 3303 238 29 19 chr4 86573311 86574731 -97713931 + L1PB3 LINE L1 4356 5789 -365 1414 217 11 7 chr4 86574731 86575003 -97713659 + AluJb SINE Alu 1 273 -39 377 39 0 19 chr4 86575004 86575056 -97713606 + (CA)n Simple_repeat Simple_repeat 1 51 0 1992 111 105 12 chr4 86575058 86575383 -97713279 + L1PB3 LINE L1 5795 6149 -5 24 0 0 0 chr4 86575399 86575423 -97713239 + AT_rich Low_complexity Low_complexity 1 24 0 936 196 18 0 chr4 86575427 86575595 -97713067 + AluJo SINE Alu 120 290 -22 767 159 0 30 chr4 86575825 86575957 -97712705 - FLAM_C SINE Alu -5 128 1 21 0 0 0 chr4 86576104 86576125 -97712537 + AT_rich Low_complexity Low_complexity 1 21 0 10228 177 12 19 chr4 86576239 86577505 -97711157 + L1P LINE L1 3051 4300 -1846 2210 103 13 3 chr4 86577505 86577815 -97710847 - AluSq SINE Alu 0 313 1 10228 177 12 19 chr4 86577815 86578647 -97710015 + L1P LINE L1 4300 5136 -1010 2252 79 3 23 chr4 86578837 86579140 -97709522 - AluY SINE Alu -13 298 2 363 78 0 0 chr4 86579863 86579914 -97708748 - MLT2A1 LTR ERVL 0 444 394 234 91 0 0 chr4 86579914 86579947 -97708715 + (CA)n Simple_repeat Simple_repeat 1 33 0 3109 86 9 3 chr4 86579974 86580393 -97708269 - MLT2A1 LTR ERVL -40 404 1 1785 162 52 25 chr4 86580616 86580981 -97707681 - THE1C LTR MaLR 0 375 1 9367 130 11 64 chr4 86580981 86581447 -97707215 - THE1C-int LTR MaLR 0 1580 1091 2636 91 6 0 chr4 86581447 86581800 -97706862 + THE1A LTR MaLR 1 355 0 9367 130 11 64 chr4 86581800 86582998 -97705664 - THE1C-int LTR MaLR -489 1091 3 1763 138 72 36 chr4 86583000 86583362 -97705300 - THE1C LTR MaLR 0 375 1 243 61 0 0 chr4 86583517 86583550 -97705112 + (TG)n Simple_repeat Simple_repeat 2 34 0 29 28 0 0 chr4 86585642 86585678 -97702984 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr4 86586161 86586190 -97702472 + AT_rich Low_complexity Low_complexity 1 29 0 2113 132 6 6 chr4 86586268 86586579 -97702083 - AluSx SINE Alu -1 311 1 664 126 274 0 chr4 86586664 86586799 -97701863 - MER20 DNA MER1_type -47 172 1 955 219 40 114 chr4 86586952 86587373 -97701289 - MLT1B LTR MaLR 0 390 1 224 294 39 49 chr4 86588165 86588267 -97700395 + MIR SINE MIR 44 144 -64 853 218 127 82 chr4 86588277 86588654 -97700008 - MSTD LTR MaLR 0 396 3 33 43 0 0 chr4 86588711 86588758 -97699904 + AT_rich Low_complexity Low_complexity 1 47 0 21 57 0 0 chr4 86589661 86589696 -97698966 + AT_rich Low_complexity Low_complexity 1 35 0 28 29 0 0 chr4 86590066 86590101 -97698561 + AT_rich Low_complexity Low_complexity 1 35 0 2250 99 0 3 chr4 86590449 86590752 -97697910 + AluSg SINE Alu 1 302 -8 1876 240 46 45 chr4 86591105 86591216 -97697446 + MER97b DNA MER1_type? 124 233 -820 246 62 0 0 chr4 86591216 86591248 -97697414 + (CA)n Simple_repeat Simple_repeat 1 32 0 1876 240 46 45 chr4 86591248 86591868 -97696794 + MER97b DNA MER1_type? 233 856 -197 357 347 7 14 chr4 86592339 86592486 -97696176 + MIR SINE MIR 39 184 -78 377 315 111 17 chr4 86592842 86593023 -97695639 + MIR SINE MIR 4 201 -61 2033 135 0 101 chr4 86593024 86593335 -97695327 + MER47A DNA MER2_type 1 263 -2060 833 197 22 39 chr4 86593335 86593513 -97695149 - FAM SINE Alu 0 175 1 2033 135 0 101 chr4 86593513 86593608 -97695054 + MER47A DNA MER2_type 263 366 0 1204 252 85 6 chr4 86593710 86594039 -97694623 + MLT1A1 LTR MaLR 11 365 0 392 310 17 0 chr4 86594157 86594273 -97694389 + MER5B DNA MER1_type 1 118 -60 314 338 81 39 chr4 86594232 86594540 -97694122 - L2 LINE L2 -839 2475 2155 * 1706 250 47 77 chr4 86594548 86595147 -97693515 + MLT1E LTR MaLR 1 581 -12 25 0 0 0 chr4 86595199 86595224 -97693438 + AT_rich Low_complexity Low_complexity 1 25 0 251 388 98 22 chr4 86595584 86595795 -97692867 - L2 LINE L2 -1361 1953 1760 1327 202 21 108 chr4 86595795 86596306 -97692356 + MLT1C LTR MaLR 1 467 0 251 388 98 22 chr4 86596306 86596460 -97692202 - L2 LINE L2 -1554 1760 1560 266 289 133 15 chr4 86596488 86596623 -97692039 + MER5A DNA MER1_type 39 189 0 357 324 49 17 chr4 86596827 86596985 -97691677 - MER5A DNA MER1_type -5 184 15 371 240 67 101 chr4 86597050 86597229 -97691433 + L3 LINE CR1 939 1111 -466 225 154 0 0 chr4 86597688 86597727 -97690935 + CT-rich Low_complexity Low_complexity 4 42 0 251 293 121 17 chr4 86597774 86597890 -97690772 + MER5B DNA MER1_type 2 129 -49 1733 174 3 58 chr4 86599203 86599530 -97689132 - AluJb SINE Alu -1 311 3 226 309 11 11 chr4 86600645 86600739 -97687923 + MER110 LTR ERV1 386 479 -12 271 314 59 10 chr4 86602053 86602155 -97686507 + MIR SINE MIR 34 140 -122 22 0 0 0 chr4 86602163 86602185 -97686477 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr4 86602403 86602437 -97686225 + AT_rich Low_complexity Low_complexity 1 34 0 213 303 66 0 chr4 86603278 86603354 -97685308 + MIR SINE MIR 167 247 -15 188 333 16 0 chr4 86604091 86604154 -97684508 - L3 LINE CR1 -3 1574 1511 1550 217 41 27 chr4 86605129 86605498 -97683164 + MLT1A2 LTR MaLR 1 374 0 261 340 64 0 chr4 86605929 86606023 -97682639 - L2 LINE L2 -15 3257 3158 1059 268 71 19 chr4 86606226 86606551 -97682111 - LTR16C LTR ERVL 0 491 150 801 252 63 118 chr4 86606983 86607674 -97680988 + L2 LINE L2 2613 3267 -46 273 328 15 23 chr4 86607674 86607805 -97680857 - MLT1I LTR MaLR 0 409 280 304 204 143 61 chr4 86607884 86607982 -97680680 - MLT1I LTR MaLR -252 157 52 25 31 0 0 chr4 86608140 86608172 -97680490 + AT_rich Low_complexity Low_complexity 1 32 0 183 264 132 0 chr4 86608172 86608225 -97680437 + L2 LINE L2 3197 3256 -57 204 97 0 0 chr4 86608277 86608308 -97680354 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 233 250 15 0 chr4 86608374 86608442 -97680220 + (TA)n Simple_repeat Simple_repeat 1 69 0 502 354 85 0 chr4 86609203 86609426 -97679236 - MIR SINE MIR -15 247 6 241 236 0 0 chr4 86610151 86610206 -97678456 + L1MC4 LINE L1 6652 6706 -1336 488 303 32 63 chr4 86610207 86610491 -97678171 - MLT1J LTR MaLR -10 501 227 368 380 9 0 chr4 86610876 86611097 -97677565 - L1ME LINE L1 -329 5792 5570 23 0 0 0 chr4 86611696 86611719 -97676943 + AT_rich Low_complexity Low_complexity 1 23 0 350 61 0 0 chr4 86612037 86612086 -97676576 - L1MB7 LINE L1 -8 6176 6128 3164 225 34 20 chr4 86612103 86613000 -97675662 - L1MB7 LINE L1 -20 6292 5346 408 253 0 0 chr4 86613007 86613106 -97675556 - L1MB7 LINE L1 -872 5274 5176 372 163 22 11 chr4 86613124 86613216 -97675446 - L1MA9 LINE L1 0 6312 6220 7763 196 38 40 chr4 86613220 86616068 -97672594 - L1ME2 LINE L1 -10 7696 4897 2039 144 126 11 chr4 86616068 86616442 -97672220 + MSTA LTR MaLR 1 417 -11 2810 255 56 24 chr4 86616450 86617637 -97671025 - L1ME2 LINE L1 -2953 4612 3384 4405 250 71 41 chr4 86617804 86619338 -97669324 - L1M2 LINE L1 -4161 2050 467 180 0 0 0 chr4 86619338 86619358 -97669304 + (TTA)n Simple_repeat Simple_repeat 2 21 0 4405 250 71 41 chr4 86619358 86619840 -97668822 - L1M2 LINE L1 -5744 467 1 2559 236 16 16 chr4 86619814 86620106 -97668556 - L1M4 LINE L1 -947 5263 4972 * 1986 138 0 3 chr4 86620106 86620403 -97668259 - AluSx SINE Alu -16 296 1 2559 236 16 16 chr4 86620403 86620792 -97667870 - L1M4 LINE L1 -1237 4973 4582 4551 243 80 38 chr4 86620874 86622816 -97665846 - L1M4 LINE L1 -4548 2098 67 2210 84 7 23 chr4 86622816 86623124 -97665538 - AluY SINE Alu -8 303 1 4551 243 80 38 chr4 86623124 86623181 -97665481 - L1M4 LINE L1 -6579 67 14 284 312 58 7 chr4 86623330 86623468 -97665194 - L1ME LINE L1 -381 5740 5596 1690 154 46 68 chr4 86623754 86624149 -97664513 - MLT1B LTR MaLR -4 386 1 323 257 115 69 chr4 86625347 86625555 -97663107 + MIR SINE MIR 5 213 -49 198 0 0 0 chr4 86625576 86625598 -97663064 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 27 87 0 0 chr4 86625863 86625932 -97662730 + AT_rich Low_complexity Low_complexity 1 69 0 365 229 165 15 chr4 86626575 86626746 -97661916 + MIR SINE MIR 9 252 -10 357 260 123 20 chr4 86627915 86628061 -97660601 + MIR SINE MIR 88 248 -14 234 295 181 18 chr4 86628071 86628237 -97660425 + MIR SINE MIR 57 249 -13 724 210 39 0 chr4 86628473 86628654 -97660008 + LTR37B LTR ERV1 281 468 0 991 167 171 48 chr4 86628691 86628943 -97659719 - MLT1A1 LTR MaLR 0 365 83 219 274 0 24 chr4 86629832 86629916 -97658746 + (TA)n Simple_repeat Simple_repeat 1 82 0 514 76 58 29 chr4 86629921 86630092 -97658570 + (TATAA)n Simple_repeat Simple_repeat 5 180 0 2353 91 0 0 chr4 86630169 86630478 -97658184 + AluSg1 SINE Alu 1 309 0 1627 162 7 36 chr4 86630503 86630805 -97657857 + AluJo SINE Alu 13 305 -7 249 336 60 15 chr4 86631151 86631285 -97657377 - MIR SINE MIR -51 211 72 24 53 0 0 chr4 86631339 86631377 -97657285 + AT_rich Low_complexity Low_complexity 1 38 0 486 319 134 69 chr4 86631452 86631990 -97656672 - L2 LINE L2 -15 3298 2729 606 311 179 25 chr4 86632319 86632727 -97655935 - L2 LINE L2 -2 3311 2841 250 291 8 8 chr4 86633872 86633989 -97654673 + (TA)n Simple_repeat Simple_repeat 1 117 0 21 57 0 0 chr4 86634044 86634079 -97654583 + AT_rich Low_complexity Low_complexity 1 35 0 202 182 23 23 chr4 86634102 86634146 -97654516 + L2 LINE L2 3265 3308 -5 768 262 43 0 chr4 86635076 86635286 -97653376 - MER20 DNA MER1_type 0 219 1 258 192 0 0 chr4 86637021 86637073 -97651589 + (TG)n Simple_repeat Simple_repeat 2 53 0 356 322 8 0 chr4 86637629 86637747 -97650915 + MIR SINE MIR 84 202 -60 200 296 99 0 chr4 86637757 86637828 -97650834 + MIR SINE MIR 129 206 -56 * 373 308 17 8 chr4 86637821 86637938 -97650724 + L2 LINE L2 3196 3313 0 27 29 0 0 chr4 86639250 86639284 -97649378 + AT_rich Low_complexity Low_complexity 1 34 0 1015 298 24 34 chr4 86640335 86640744 -97647918 + MLT1I LTR MaLR 3 407 -2 456 304 25 104 chr4 86640783 86640928 -97647734 + MIR SINE MIR 5 119 -143 1825 151 24 0 chr4 86640928 86641220 -97647442 - AluSq SINE Alu -14 299 1 456 304 25 104 chr4 86641220 86641354 -97647308 + MIR SINE MIR 119 262 0 640 284 42 6 chr4 86641569 86641759 -97646903 + MIR SINE MIR 69 262 0 31 68 0 0 chr4 86642275 86642334 -97646328 + AT_rich Low_complexity Low_complexity 1 59 0 1970 101 14 3 chr4 86643320 86643616 -97645046 - AluSx SINE Alu -13 299 1 1663 152 0 47 chr4 86643693 86643989 -97644673 + AluJo SINE Alu 1 282 -30 327 148 46 19 chr4 86644604 86644712 -97643950 + (TA)n Simple_repeat Simple_repeat 1 111 0 1724 160 6 19 chr4 86645317 86645629 -97643033 + AluJb SINE Alu 1 308 -4 26 50 0 0 chr4 86646052 86646092 -97642570 + AT_rich Low_complexity Low_complexity 1 40 0 264 352 0 0 chr4 86646736 86646807 -97641855 + MIR SINE MIR 79 149 -113 361 178 11 11 chr4 86647215 86647305 -97641357 + GA-rich Low_complexity Low_complexity 3 92 0 26 30 0 0 chr4 86647766 86647799 -97640863 + AT_rich Low_complexity Low_complexity 1 33 0 28 29 0 0 chr4 86647852 86647887 -97640775 + AT_rich Low_complexity Low_complexity 1 35 0 209 170 57 0 chr4 86648896 86648949 -97639713 + (AAATG)n Simple_repeat Simple_repeat 2 57 0 291 28 0 0 chr4 86650053 86650089 -97638573 + (TG)n Simple_repeat Simple_repeat 2 37 0 341 324 18 96 chr4 86650312 86650593 -97638069 + L2 LINE L2 3005 3263 -50 21 36 0 0 chr4 86651353 86651381 -97637281 + AT_rich Low_complexity Low_complexity 1 28 0 227 229 83 0 chr4 86651558 86651667 -97636995 - L1ME4a LINE L1 -4 6117 6000 1576 178 120 40 chr4 86652034 86652434 -97636228 - MSTB1 LTR MaLR 0 432 1 257 128 21 0 chr4 86652503 86652550 -97636112 + (TA)n Simple_repeat Simple_repeat 2 49 0 252 59 0 0 chr4 86652607 86652641 -97636021 + (TG)n Simple_repeat Simple_repeat 1 34 0 2073 108 4 0 chr4 86652641 86652919 -97635743 - AluSp SINE Alu -33 280 2 235 267 60 43 chr4 86652971 86653087 -97635575 - L1MC5 LINE L1 -520 7441 7324 22 35 0 0 chr4 86653305 86653334 -97635328 + AT_rich Low_complexity Low_complexity 1 29 0 493 282 57 10 chr4 86653412 86653621 -97635041 - L1MC5 LINE L1 -2040 5768 5550 2229 61 14 3 chr4 86654085 86654382 -97634280 + AluY SINE Alu 3 302 -9 459 0 0 0 chr4 86654383 86654434 -97634228 + (CA)n Simple_repeat Simple_repeat 1 51 0 1336 34 23 0 chr4 86654464 86654481 -97634181 + (TTTC)n Simple_repeat Simple_repeat 1 197 0 1336 34 23 0 chr4 86654481 86654657 -97634005 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2104 122 3 0 chr4 86654717 86655020 -97633642 - AluSx SINE Alu -8 304 1 228 135 0 0 chr4 86656371 86656408 -97632254 + (TG)n Simple_repeat Simple_repeat 2 38 0 463 162 0 34 chr4 86656508 86656656 -97632006 + (TA)n Simple_repeat Simple_repeat 2 144 0 2198 84 0 37 chr4 86656924 86657247 -97631415 - AluY SINE Alu 0 311 1 1317 156 69 28 chr4 86657550 86657839 -97630823 - L1MA7 LINE L1 -2 6289 5989 26 50 0 0 chr4 86658273 86658313 -97630349 + AT_rich Low_complexity Low_complexity 1 40 0 583 261 62 96 chr4 86658855 86659177 -97629485 + L2 LINE L2 2998 3308 -5 26 0 0 0 chr4 86660136 86660162 -97628500 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr4 86661033 86661062 -97627600 + AT_rich Low_complexity Low_complexity 1 29 0 32 43 0 0 chr4 86661446 86661492 -97627170 + AT_rich Low_complexity Low_complexity 1 46 0 228 387 0 0 chr4 86662275 86662381 -97626281 + MIR3 SINE MIR 98 203 -5 22 35 0 0 chr4 86662511 86662540 -97626122 + AT_rich Low_complexity Low_complexity 1 29 0 1939 143 0 0 chr4 86662540 86662840 -97625822 + AluSx SINE Alu 1 300 -12 22 70 0 0 chr4 86663054 86663097 -97625565 + AT_rich Low_complexity Low_complexity 1 43 0 26 30 0 0 chr4 86663791 86663824 -97624838 + AT_rich Low_complexity Low_complexity 1 33 0 189 262 0 0 chr4 86665222 86665283 -97623379 + C-rich Low_complexity Low_complexity 2 62 0 24 32 0 0 chr4 86666551 86666582 -97622080 + AT_rich Low_complexity Low_complexity 1 31 0 234 406 14 38 chr4 86666970 86667182 -97621480 - L2 LINE L2 -243 3029 2823 24 0 0 0 chr4 86667945 86667969 -97620693 + AT_rich Low_complexity Low_complexity 1 24 0 246 354 81 10 chr4 86668034 86668232 -97620430 - MIR SINE MIR 0 262 51 216 0 0 0 chr4 86668454 86668478 -97620184 + (T)n Simple_repeat Simple_repeat 1 24 0 237 33 0 0 chr4 86668777 86668807 -97619855 + (TG)n Simple_repeat Simple_repeat 2 31 0 26 50 0 0 chr4 86668889 86668929 -97619733 + AT_rich Low_complexity Low_complexity 1 40 0 41229 61 2 6 chr4 86669905 86676074 -97612588 - L1PA4 LINE L1 -13 6142 1 917 274 12 12 chr4 86676455 86676700 -97611962 + MER115 DNA AcHobo 449 693 0 1599 168 132 43 chr4 86677263 86677656 -97611006 + MSTA LTR MaLR 1 428 0 1701 203 44 50 chr4 86678215 86678674 -97609988 + MLT1C LTR MaLR 12 467 0 246 351 45 30 chr4 86678674 86678808 -97609854 + L2 LINE L2 2623 2758 -556 629 234 38 29 chr4 86678808 86679017 -97609645 + MER33 DNA MER1_type 9 219 -105 247 393 14 47 chr4 86679092 86679303 -97609359 + L2 LINE L2 2768 2971 -343 291 294 47 47 chr4 86679405 86679575 -97609087 + L2 LINE L2 3143 3312 -1 25 83 0 0 chr4 86681628 86681688 -97606974 + AT_rich Low_complexity Low_complexity 1 60 0 239 0 32 0 chr4 86682183 86682214 -97606448 + (TG)n Simple_repeat Simple_repeat 1 32 0 385 351 116 21 chr4 86682250 86682637 -97606025 - L2 LINE L2 -514 2800 2377 34 79 0 0 chr4 86683572 86683648 -97605014 + AT_rich Low_complexity Low_complexity 1 76 0 1184 139 6 0 chr4 86683716 86683889 -97604773 - AluSg/x SINE Alu -15 297 124 410 261 80 34 chr4 86683982 86684072 -97604590 - L1 LINE L1 -3268 2878 2794 2577 102 3 0 chr4 86684072 86684426 -97604236 - THE1A LTR MaLR 0 355 1 410 261 80 34 chr4 86684426 86684511 -97604151 - L1 LINE L1 -3352 2794 2695 10025 250 62 24 chr4 86684598 86685403 -97603259 + L1PBb LINE L1 400 1173 -5030 203 88 29 0 chr4 86685403 86685437 -97603225 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 10025 250 62 24 chr4 86685437 86688980 -97599682 + L1PBb LINE L1 1173 5067 -1136 2047 113 22 38 chr4 86688980 86689298 -97599364 + AluSq SINE Alu 1 313 0 10025 250 62 24 chr4 86689298 86689634 -97599028 + L1PBb LINE L1 5067 5389 -814 815 267 17 0 chr4 86689773 86689953 -97598709 + MER58A DNA MER1_type 20 202 -22 909 269 40 65 chr4 86689986 86690387 -97598275 - L2 LINE L2 -76 3237 2847 294 196 59 0 chr4 86690550 86690652 -97598010 + (TCTA)n Simple_repeat Simple_repeat 4 111 0 * 332 276 24 0 chr4 86690585 86690708 -97597954 + (TA)n Simple_repeat Simple_repeat 1 126 0 21 36 0 0 chr4 86690849 86690877 -97597785 + AT_rich Low_complexity Low_complexity 1 28 0 553 276 20 55 chr4 86691542 86691741 -97596921 - MIR SINE MIR -35 227 36 2447 77 0 0 chr4 86693199 86693510 -97595152 - AluY SINE Alu 0 311 1 209 198 69 20 chr4 86694743 86694844 -97593818 + (TTATA)n Simple_repeat Simple_repeat 3 108 0 49 66 0 0 chr4 86696279 86696370 -97592292 + AT_rich Low_complexity Low_complexity 1 91 0 383 322 98 5 chr4 86696924 86697138 -97591524 + L2 LINE L2 2167 2400 -914 224 318 127 0 chr4 86697215 86697341 -97591321 - MIR SINE MIR -8 254 113 33 0 0 94 chr4 86697793 86697857 -97590805 + AT_rich Low_complexity Low_complexity 1 58 0 25 73 0 0 chr4 86697865 86697906 -97590756 + AT_rich Low_complexity Low_complexity 1 41 0 24 75 0 0 chr4 86697966 86698006 -97590656 + AT_rich Low_complexity Low_complexity 1 40 0 3015 186 34 19 chr4 86698032 86698489 -97590173 + L1PA16 LINE L1 4556 5005 -1151 2047 113 22 38 chr4 86698489 86698807 -97589855 + AluSq SINE Alu 1 313 0 3015 186 34 19 chr4 86698807 86699583 -97589079 + L1PA16 LINE L1 5005 5800 -356 1882 184 3 11 chr4 86699696 86700061 -97588601 + L1PA16 LINE L1 5788 6149 -17 334 361 32 20 chr4 86700321 86700573 -97588089 - L1ME LINE L1 -413 5708 5454 22 0 0 0 chr4 86700694 86700716 -97587946 + AT_rich Low_complexity Low_complexity 1 22 0 445 358 101 27 chr4 86700893 86701307 -97587355 + L2 LINE L2 2278 2722 -592 309 340 0 21 chr4 86702503 86702644 -97586018 + GA-rich Low_complexity Low_complexity 2 139 0 321 26 0 0 chr4 86703410 86703448 -97585214 + (CA)n Simple_repeat Simple_repeat 1 38 0 263 265 20 0 chr4 86704824 86704922 -97583740 + L1M4 LINE L1 2259 2358 -3788 29 47 0 0 chr4 86705870 86705913 -97582749 + AT_rich Low_complexity Low_complexity 1 43 0 31 44 0 0 chr4 86706141 86706186 -97582476 + AT_rich Low_complexity Low_complexity 1 45 0 375 274 56 56 chr4 86706522 86706737 -97581925 - LTR16A1 LTR ERVL -9 448 234 272 389 9 0 chr4 86707006 86707119 -97581543 - MIR3 SINE MIR -52 156 43 916 177 23 11 chr4 86707573 86707748 -97580914 - L1MB1 LINE L1 -290 5878 5702 2212 105 0 0 chr4 86709834 86710130 -97578532 - AluSc SINE Alu -13 296 1 369 276 102 0 chr4 86710994 86711092 -97577570 + MIR SINE MIR 85 192 -70 192 313 139 14 chr4 86712850 86712994 -97575668 + L2 LINE L2 1638 1799 -1515 214 246 14 29 chr4 86713293 86713362 -97575300 + (TATATG)n Simple_repeat Simple_repeat 4 71 0 23 0 0 0 chr4 86713439 86713462 -97575200 + AT_rich Low_complexity Low_complexity 1 23 0 241 344 64 55 chr4 86713968 86714186 -97574476 + L2 LINE L2 2746 2965 -349 624 319 24 0 chr4 86714572 86714779 -97573883 + MIR SINE MIR 1 212 -50 303 234 11 75 chr4 86715171 86715265 -97573397 - MIR SINE MIR -50 212 125 1677 180 0 42 chr4 86715930 86716241 -97572421 - AluJb SINE Alu -13 299 2 183 146 0 0 chr4 86716403 86716444 -97572218 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 23 0 0 0 chr4 86716669 86716692 -97571970 + AT_rich Low_complexity Low_complexity 1 23 0 1469 140 0 0 chr4 86716693 86716922 -97571740 + L1PA12 LINE L1 1 229 -7352 * 5314 124 21 2 chr4 86716921 86717734 -97570928 + L1PA12 LINE L1 1478 2305 -5276 203 277 62 71 chr4 86717834 86717946 -97570716 - L2 LINE L2 -746 2568 2458 1080 168 299 50 chr4 86717997 86718438 -97570224 + MER34B LTR ERV1 5 555 -10 554 262 133 33 chr4 86718529 86718739 -97569923 - L2 LINE L2 -930 2384 2154 368 339 121 18 chr4 86719125 86719349 -97569313 + MIR SINE MIR 3 249 -13 248 234 319 49 chr4 86720892 86721118 -97567544 + HAL1 LINE L1 195 481 -2026 * 4501 22 0 0 chr4 86721104 86721751 -97566911 + L1PA3 LINE L1 5134 5780 -375 7746 21 0 0 chr4 86721751 86723381 -97565281 + L1PA2 LINE L1 4526 6155 0 3136 31 3 13 chr4 86723381 86723769 -97564893 + L1PA3 LINE L1 5770 6155 0 285 279 27 120 chr4 86723794 86723977 -97564685 + HAL1 LINE L1 480 645 -1862 297 278 9 26 chr4 86724275 86724390 -97564272 + CT-rich Low_complexity Low_complexity 3 115 0 398 349 33 7 chr4 86724452 86724604 -97564058 + MIR SINE MIR 1 156 -106 3460 100 3 121 chr4 86725161 86725507 -97563155 + L1PA12 LINE L1 2282 2667 -4914 1000 108 0 27 chr4 86725507 86725692 -97562970 + (TTC)n Simple_repeat Simple_repeat 1 180 0 314 85 0 0 chr4 86725695 86725742 -97562920 - L1PA3 LINE L1 0 6155 6109 3460 100 3 121 chr4 86725742 86726058 -97562604 + L1PA12 LINE L1 2669 2869 -4712 592 309 82 5 chr4 86726248 86726468 -97562194 - MIR SINE MIR 0 262 26 264 139 0 0 chr4 86727382 86727418 -97561244 + tRNA-Gly-GGG tRNA tRNA 1 36 -38 203 286 0 0 chr4 86727430 86727486 -97561176 + T-rich Low_complexity Low_complexity 1 56 0 188 276 71 55 chr4 86727560 86727687 -97560975 - MIR SINE MIR -14 248 120 211 203 16 62 chr4 86728102 86728166 -97560496 + MIR3 SINE MIR 103 163 -45 2127 109 0 3 chr4 86730092 86730415 -97558247 - AluSc SINE Alu 0 322 1 269 200 62 0 chr4 86731749 86731814 -97556848 + L1MA2 LINE L1 15 83 -7482 * 13210 175 31 21 chr4 86731812 86737181 -97551481 + L1MA2 LINE L1 2299 7723 0 3020 139 6 8 chr4 86737188 86737690 -97550972 + L1MA3 LINE L1 5655 6155 -150 5735 92 36 8 chr4 86737948 86739054 -97549608 + L1PA13 LINE L1 5036 6161 -2 1966 188 19 32 chr4 86739194 86739657 -97549005 + MER74C LTR ERVL 4 460 0 2259 169 22 47 chr4 86740211 86740396 -97548266 - Tigger1 DNA MER2_type -2 2416 2228 1980 64 113 0 chr4 86740396 86740661 -97548001 - AluY SINE Alu -16 295 1 2259 169 22 47 chr4 86740661 86740924 -97547738 - Tigger1 DNA MER2_type -190 2228 1979 1899 164 56 11 chr4 86740924 86741283 -97547379 + THE1C LTR MaLR 1 375 0 1428 66 3 185 chr4 86741283 86741586 -97547076 + THE1C-int LTR MaLR 1 248 -1332 375 371 122 28 chr4 86742024 86742361 -97546301 - L2 LINE L2 -640 2674 2370 2259 111 27 46 chr4 86742361 86742732 -97545930 - THE1B LTR MaLR 0 364 1 375 371 122 28 chr4 86742732 86743202 -97545460 - L2 LINE L2 -944 2370 1671 213 39 0 0 chr4 86743202 86743228 -97545434 + (TG)n Simple_repeat Simple_repeat 2 27 0 375 371 122 28 chr4 86743228 86743364 -97545298 - L2 LINE L2 -1643 1671 1549 1486 206 99 43 chr4 86743471 86743913 -97544749 + MLT1C LTR MaLR 1 467 0 1269 136 113 23 chr4 86744819 86745076 -97543586 + MER21A LTR ERV1 1 280 -651 * 2527 171 69 34 chr4 86745056 86745581 -97543081 + MER21A LTR ERV1 381 923 -8 799 184 101 50 chr4 86747113 86747450 -97541212 - MER69 DNA AcHobo -99 2427 2074 278 280 13 13 chr4 86747763 86747838 -97540824 - MER69 DNA AcHobo -1151 75 1 2169 69 4 0 chr4 86748997 86749310 -97539352 - AluY SINE Alu 0 319 6 26 0 0 0 chr4 86749375 86749401 -97539261 + AT_rich Low_complexity Low_complexity 1 26 0 1361 185 99 48 chr4 86750265 86750638 -97538024 - MSTD LTR MaLR -2 394 3 1576 209 13 45 chr4 86750952 86751329 -97537333 + MLT1A1 LTR MaLR 1 365 0 25 31 0 0 chr4 86752144 86752176 -97536486 + AT_rich Low_complexity Low_complexity 1 32 0 235 272 216 0 chr4 86754023 86754148 -97534514 + MIR SINE MIR 84 235 -27 1343 254 112 64 chr4 86754191 86754876 -97533786 + MER50 LTR ERV1 17 734 0 233 283 264 0 chr4 86755556 86755662 -97533000 - L2 LINE L2 0 3272 3139 642 238 78 70 chr4 86756099 86756643 -97532019 + LTR48B LTR ERV1 1 644 0 295 394 65 5 chr4 86757329 86757545 -97531117 + MIR SINE MIR 34 262 0 1270 150 136 119 chr4 86757718 86758043 -97530619 + LTR54B LTR ERV1 2 339 -159 1661 109 148 0 chr4 86758043 86758300 -97530362 + AluSc SINE Alu 2 296 -3 1270 150 136 119 chr4 86758300 86758460 -97530202 + LTR54B LTR ERV1 339 495 -3 22 0 0 0 chr4 86758692 86758714 -97529948 + AT_rich Low_complexity Low_complexity 1 22 0 520 200 55 0 chr4 86759708 86759873 -97528789 + L1MA3 LINE L1 6132 6305 0 1937 186 6 0 chr4 86760216 86760550 -97528112 + MER1B DNA MER1_type 2 337 0 1875 146 140 8 chr4 86761093 86761471 -97527191 + MSTA LTR MaLR 1 428 0 1673 208 67 3 chr4 86762601 86762972 -97525690 - MSTD LTR MaLR -1 395 1 630 0 0 0 chr4 86763246 86763316 -97525346 + (TAAAA)n Simple_repeat Simple_repeat 1 70 0 268 148 23 34 chr4 86763500 86763588 -97525074 + CT-rich Low_complexity Low_complexity 4 90 0 2417 44 0 0 chr4 86764012 86764325 -97524337 + L1PA3 LINE L1 5841 6153 0 180 77 0 0 chr4 86764341 86764367 -97524295 + (A)n Simple_repeat Simple_repeat 1 26 0 198 0 0 0 chr4 86765338 86765360 -97523302 + (TA)n Simple_repeat Simple_repeat 2 23 0 211 256 122 12 chr4 86765432 86765514 -97523148 + MIR SINE MIR 102 192 -70 4111 174 32 34 chr4 86766225 86767250 -97521412 - L1MB7 LINE L1 -8 6176 5150 203 348 85 0 chr4 86769048 86769166 -97519496 - MIR SINE MIR -102 160 33 1004 254 3 21 chr4 86769244 86769528 -97519134 - L1MA9 LINE L1 -38 6274 5996 1474 234 103 60 chr4 86769699 86770183 -97518479 + MLT1F1 LTR MaLR 63 567 0 347 269 62 23 chr4 86770463 86770593 -97518069 - MIR SINE MIR -56 206 72 24 32 0 0 chr4 86771810 86771841 -97516821 + AT_rich Low_complexity Low_complexity 1 31 0 1674 137 139 61 chr4 86772072 86772467 -97516195 + MSTA LTR MaLR 3 428 0 182 119 48 0 chr4 86774147 86774189 -97514473 + T-rich Low_complexity Low_complexity 3 46 0 1733 258 69 75 chr4 86774510 86775246 -97513416 + LTR41 LTR ERVL 1 732 -41 1646 161 82 20 chr4 86776039 86776392 -97512270 - THE1C LTR MaLR 0 375 1 8794 129 62 15 chr4 86776392 86777450 -97511212 - THE1C-int LTR MaLR 0 1580 428 2402 97 0 0 chr4 86777450 86777759 -97510903 - AluY SINE Alu -2 309 1 8794 129 62 15 chr4 86777759 86778209 -97510453 - THE1C-int LTR MaLR -1152 428 1 1597 125 64 105 chr4 86778209 86778600 -97510062 - THE1C LTR MaLR 0 375 1 224 241 18 36 chr4 86779364 86779476 -97509186 + A-rich Low_complexity Low_complexity 5 114 0 1495 88 10 0 chr4 86780320 86780512 -97508150 + AluSc SINE Alu 1 194 -115 1774 148 22 3 chr4 86780512 86780830 -97507832 + L1MA4 LINE L1 5971 6294 -6 1924 135 0 7 chr4 86781889 86782193 -97506469 - AluSc SINE Alu -7 302 1 1585 232 46 3 chr4 86783328 86783716 -97504946 - L1MD2 LINE L1 -341 6018 5614 2032 186 46 76 chr4 86783716 86784216 -97504446 - MLT1D LTR MaLR 0 505 21 2138 104 3 0 chr4 86784738 86785051 -97503611 - AluSp SINE Alu 0 318 5 5625 138 3 0 chr4 86785399 86786454 -97502208 - L1PA16 LINE L1 0 6166 5106 6622 195 16 38 chr4 86786466 86786871 -97501791 - L1 LINE L1 -1007 5139 4726 729 10 10 20 chr4 86786871 86786971 -97501691 + (TATAG)n Simple_repeat Simple_repeat 1 99 0 6622 195 16 38 chr4 86786971 86788152 -97500510 - L1 LINE L1 -1420 4726 3589 8309 153 30 6 chr4 86788225 86789894 -97498768 - L1PBa LINE L1 -3788 3074 1311 4286 200 63 7 chr4 86789941 86790928 -97497734 - L1PBa LINE L1 -5816 1047 6 267 54 0 0 chr4 86792072 86792109 -97496553 + (CA)n Simple_repeat Simple_repeat 2 38 0 626 151 27 34 chr4 86792218 86792364 -97496298 - L1MB1 LINE L1 -6 6162 6018 10183 215 45 51 chr4 86792417 86793162 -97495500 - L1 LINE L1 -1150 6017 5269 2321 69 0 7 chr4 86793162 86793453 -97495209 - AluY SINE Alu -3 308 20 10183 215 45 51 chr4 86793453 86795417 -97493245 - L1 LINE L1 -1898 5269 3295 5979 71 0 16 chr4 86795417 86796210 -97492452 - LTR17 LTR ERV1 0 780 1 10183 215 45 51 chr4 86796210 86799854 -97488808 - L1 LINE L1 -3872 3295 1 1427 249 2 45 chr4 86799854 86800281 -97488381 - L1 LINE L1 -1099 5047 4638 2160 84 0 59 chr4 86800281 86800601 -97488061 - AluY SINE Alu -9 302 2 1427 249 2 45 chr4 86800601 86800619 -97488043 - L1 LINE L1 -1508 4638 4621 180 0 0 0 chr4 86800621 86800641 -97488021 + (TTG)n Simple_repeat Simple_repeat 2 21 0 33 66 0 0 chr4 86802271 86802332 -97486330 + AT_rich Low_complexity Low_complexity 1 61 0 22 35 0 0 chr4 86802903 86802932 -97485730 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr4 86802944 86802979 -97485683 + AT_rich Low_complexity Low_complexity 1 35 0 843 112 0 8 chr4 86804085 86804219 -97484443 - L1PA13 LINE L1 -1 6162 6030 279 0 0 0 chr4 86804493 86804524 -97484138 + (TG)n Simple_repeat Simple_repeat 2 32 0 533 174 110 9 chr4 86804529 86804638 -97484024 - FRAM SINE Alu -23 153 34 247 364 67 72 chr4 86805066 86805753 -97482909 + L2 LINE L2 2596 3269 -3 29 0 0 0 chr4 86805906 86805935 -97482727 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr4 86806120 86806146 -97482516 + AT_rich Low_complexity Low_complexity 1 26 0 2475 55 0 0 chr4 86807062 86807355 -97481307 + AluY SINE Alu 1 293 -18 241 226 0 0 chr4 86808319 86808372 -97480290 - L2 LINE L2 0 3313 3261 7488 30 0 0 chr4 86808686 86809743 -97478919 - L1PA4 LINE L1 -4 6151 5103 6136 32 0 1 chr4 86809743 86810488 -97478174 + L1P LINE L1 4396 5139 -1007 614 211 82 43 chr4 86810536 86810566 -97478096 + MER5C DNA MER1_type 52 79 -245 1674 141 198 25 chr4 86810566 86810929 -97477733 - MSTC LTR MaLR -2 426 1 614 211 82 43 chr4 86810929 86811106 -97477556 + MER5C DNA MER1_type 79 267 -57 36 40 0 0 chr4 86813637 86813687 -97474975 + AT_rich Low_complexity Low_complexity 1 50 0 654 168 96 30 chr4 86813798 86813965 -97474697 - MER53 DNA DNA 0 189 12 645 272 11 28 chr4 86816318 86816498 -97472164 + MIR SINE MIR 46 222 -40 22 35 0 0 chr4 86816686 86816715 -97471947 + AT_rich Low_complexity Low_complexity 1 29 0 680 249 44 6 chr4 86816962 86817143 -97471519 + MER3 DNA MER1_type 1 188 -21 25 0 0 0 chr4 86817680 86817705 -97470957 + AT_rich Low_complexity Low_complexity 1 25 0 946 225 6 0 chr4 86819592 86819774 -97468888 - MER5A DNA MER1_type -6 183 1 367 274 29 0 chr4 86819994 86820096 -97468566 - LTR33 LTR ERVL 0 521 417 439 310 71 31 chr4 86820130 86820385 -97468277 - LTR33 LTR ERVL -197 324 60 23 33 0 0 chr4 86821368 86821398 -97467264 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr4 86822454 86822483 -97466179 + AT_rich Low_complexity Low_complexity 1 29 0 294 57 0 0 chr4 86822590 86822625 -97466037 - U2 snRNA snRNA -153 35 1 299 288 56 62 chr4 86822884 86823044 -97465618 + MER20B DNA MER1_type 13 171 -612 376 309 15 60 chr4 86823211 86823412 -97465250 + L2 LINE L2 2260 2451 -863 1839 154 7 0 chr4 86823657 86823950 -97464712 + AluSx SINE Alu 1 295 -17 408 40 0 0 chr4 86824093 86824143 -97464519 + (CA)n Simple_repeat Simple_repeat 1 50 0 36 87 0 0 chr4 86824573 86824665 -97463997 + AT_rich Low_complexity Low_complexity 1 92 0 1698 136 16 66 chr4 86825886 86826203 -97462459 - AluJo SINE Alu -11 301 1 302 316 25 13 chr4 86826312 86826470 -97462192 - L1MC4a LINE L1 -1936 5872 5713 184 211 28 0 chr4 86826500 86826571 -97462091 + (TA)n Simple_repeat Simple_repeat 2 74 0 218 258 45 0 chr4 86826607 86826673 -97461989 + (CATATA)n Simple_repeat Simple_repeat 3 71 0 1884 151 26 32 chr4 86828943 86829320 -97459342 + THE1C LTR MaLR 1 375 0 421 293 101 61 chr4 86829826 86830270 -97458392 + HAL1 LINE L1 759 1220 -1287 515 263 71 44 chr4 86830385 86830441 -97458221 + L1MCa LINE L1 1488 1541 -1246 2108 117 10 3 chr4 86830441 86830748 -97457914 - AluSx SINE Alu -3 309 1 515 263 71 44 chr4 86830748 86830966 -97457696 + L1MCa LINE L1 1541 2022 -765 23 68 0 0 chr4 86832104 86832148 -97456514 + AT_rich Low_complexity Low_complexity 1 44 0 2120 80 77 6 chr4 86832650 86833012 -97455650 - LTR7 LTR ERV1 -2 448 1 239 0 32 0 chr4 86833550 86833581 -97455081 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1830 126 7 4 chr4 86833589 86833859 -97454803 - AluSc SINE Alu -22 287 17 275 227 0 136 chr4 86833859 86833983 -97454679 - MLT1J2 LTR MaLR -273 177 70 189 171 0 0 chr4 86834089 86834124 -97454538 + (CATATA)n Simple_repeat Simple_repeat 1 35 0 204 211 14 28 chr4 86835084 86835155 -97453507 + (TA)n Simple_repeat Simple_repeat 1 70 0 210 331 25 68 chr4 86836746 86836909 -97451753 + MIR SINE MIR 21 176 -86 2039 135 0 0 chr4 86837009 86837305 -97451357 + AluSx SINE Alu 1 296 -16 492 339 117 26 chr4 86838091 86838510 -97450152 + L1MC/D LINE L1 5325 5781 -2027 27 87 0 0 chr4 86838879 86838948 -97449714 + AT_rich Low_complexity Low_complexity 1 69 0 315 320 46 22 chr4 86840733 86840955 -97447707 - L1P1 LINE L1 -333 5822 5595 7621 181 33 44 chr4 86841274 86841506 -97447156 - L1M4 LINE L1 -3706 2676 2443 972 178 27 120 chr4 86841506 86841765 -97446897 - MER46A DNA MER2_type -1 235 1 7621 181 33 44 chr4 86841765 86843111 -97445551 - L1M4 LINE L1 -3939 2443 799 910 230 81 78 chr4 86843111 86843506 -97445156 - MSTD LTR MaLR 0 396 1 7621 181 33 44 chr4 86843506 86844296 -97444366 - L1M4 LINE L1 -5583 799 2 1624 90 49 0 chr4 86844874 86845118 -97443544 - L1PA13 LINE L1 -3 6160 5905 687 132 18 2 chr4 86845132 86845242 -97443420 + L1PA13 LINE L1 5776 5884 -284 285 338 22 0 chr4 86845611 86845721 -97442941 - MIR SINE MIR -52 156 45 299 127 0 18 chr4 86846156 86846211 -97442451 + (TA)n Simple_repeat Simple_repeat 1 54 0 180 0 0 0 chr4 86846315 86846335 -97442327 + (TA)n Simple_repeat Simple_repeat 1 20 0 198 91 0 0 chr4 86846473 86846506 -97442156 + (CA)n Simple_repeat Simple_repeat 1 33 0 216 0 0 0 chr4 86848386 86848410 -97440252 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 238 295 121 24 chr4 86848559 86848725 -97439937 + L2 LINE L2 3117 3298 -15 383 264 35 63 chr4 86850093 86850267 -97438395 + MIR SINE MIR 94 262 0 210 336 39 39 chr4 86850652 86850780 -97437882 - MIR SINE MIR -68 194 67 1256 259 54 60 chr4 86851117 86851668 -97436994 - MER68 LTR ERV1 -2 560 13 404 293 15 30 chr4 86853519 86853652 -97435010 + MIR3 SINE MIR 73 203 -5 245 202 134 126 chr4 86853679 86853744 -97434918 + L2 LINE L2 3194 3262 -51 2328 87 3 0 chr4 86853744 86854042 -97434620 + AluY SINE Alu 2 300 -11 245 202 134 126 chr4 86854042 86854095 -97434567 + L2 LINE L2 3262 3313 0 1812 168 7 3 chr4 86854196 86854499 -97434163 - AluJo SINE Alu -4 308 5 1916 125 70 0 chr4 86855759 86856046 -97432616 + AluSx SINE Alu 1 307 -5 303 360 9 0 chr4 86856068 86856182 -97432480 - MIR3 SINE MIR -7 201 87 657 313 70 54 chr4 86856329 86856716 -97431946 - L2 LINE L2 0 3313 2921 1975 128 3 10 chr4 86856837 86857127 -97431535 - AluY SINE Alu -8 303 16 2103 156 9 0 chr4 86857333 86857667 -97430995 + MER1B DNA MER1_type 1 337 0 839 288 103 50 chr4 86857977 86858435 -97430227 - L2 LINE L2 -1 3312 2831 484 275 54 89 chr4 86859497 86859755 -97428907 + MIR SINE MIR 3 251 -11 375 269 43 0 chr4 86861093 86861186 -97427476 + MIR SINE MIR 166 262 0 217 279 23 35 chr4 86861325 86861411 -97427251 - MIR SINE MIR -105 157 73 339 320 157 7 chr4 86861444 86861597 -97427065 + MIR3 SINE MIR 10 185 -23 22 0 0 0 chr4 86861655 86861677 -97426985 + AT_rich Low_complexity Low_complexity 1 22 0 202 333 22 0 chr4 86863420 86863510 -97425152 + MIR SINE MIR 73 164 -98 1586 289 38 44 chr4 86863596 86864389 -97424273 + L1MEc LINE L1 324 932 -5352 38816 74 13 3 chr4 86864392 86870440 -97418222 + L1PA6 LINE L1 51 6165 0 571 254 76 46 chr4 86870443 86870839 -97417823 + L1MEc LINE L1 1015 1351 -5033 1621 134 4 8 chr4 86870852 86871090 -97417572 - AluSq SINE Alu -76 237 1 540 279 35 40 chr4 86871188 86871389 -97417273 - MIR SINE MIR -32 230 31 346 132 0 0 chr4 86872162 86872215 -97416447 + MADE1 DNA Mariner 1 53 -27 2779 152 29 25 chr4 86875856 86876343 -97412319 - LTR2B LTR ERV1 0 490 2 41880 198 9 8 chr4 86876348 86883938 -97404724 - HERVE LTR ERV1 -1 7812 209 2355 84 0 0 chr4 86885403 86885699 -97402963 - AluY SINE Alu -15 296 1 4980 112 24 23 chr4 86886296 86887074 -97401588 - MER4E LTR ERV1 0 779 1 454 220 50 0 chr4 86887118 86887218 -97401444 + MIR SINE MIR 146 250 -12 186 43 0 0 chr4 86887225 86887248 -97401414 + (TTA)n Simple_repeat Simple_repeat 2 24 0 414 189 170 19 chr4 86887661 86887767 -97400895 - MER110 LTR ERV1 -11 480 359 1582 94 24 0 chr4 86888291 86888504 -97400158 + AluSg/x SINE Alu 75 292 -18 830 286 46 15 chr4 86888992 86889254 -97399408 - MER110 LTR ERV1 -6 485 216 4411 65 29 6 chr4 86890381 86891393 -97397269 + MER11A LTR ERVK 1 1266 0 1456 217 26 52 chr4 86891469 86891758 -97396904 - MLT1B LTR MaLR -3 387 109 1235 193 26 11 chr4 86891758 86892023 -97396639 - L1PB4 LINE L1 -2 6154 5886 1456 217 26 52 chr4 86892023 86892116 -97396546 - MLT1B LTR MaLR -281 109 15 2168 132 0 0 chr4 86892282 86892592 -97396070 + AluSg SINE Alu 1 310 0 879 294 18 24 chr4 86892610 86892943 -97395719 + MER46C DNA MER2_type 8 338 0 705 284 37 14 chr4 86893012 86893230 -97395432 - MIR SINE MIR -10 252 30 1781 156 0 120 chr4 86893771 86894116 -97394546 + Tigger3(Golem) DNA MER2_type 2 387 -2641 2013 108 0 11 chr4 86894116 86894395 -97394267 - AluSc SINE Alu -15 294 19 1781 156 0 120 chr4 86894395 86894440 -97394222 + Tigger3(Golem) DNA MER2_type 387 3025 -3 207 100 0 0 chr4 86894485 86894515 -97394147 + (T)n Simple_repeat Simple_repeat 1 30 0 3157 166 6 15 chr4 86895636 86896165 -97392497 + MLT2B3 LTR ERVL 1 524 -30 192 125 0 0 chr4 86896184 86896216 -97392446 + (CCTA)n Simple_repeat Simple_repeat 3 34 0 283 322 41 58 chr4 86897096 86897267 -97391395 + MIR SINE MIR 79 246 -16 343 365 82 25 chr4 86897460 86897619 -97391043 + L2 LINE L2 3102 3269 -3 22 56 0 0 chr4 86898450 86898486 -97390176 + AT_rich Low_complexity Low_complexity 1 36 0 260 200 14 0 chr4 86898663 86898733 -97389929 + A-rich Low_complexity Low_complexity 5 75 0 230 387 66 15 chr4 86899954 86900091 -97388571 + L2 LINE L2 3119 3262 -10 209 220 40 0 chr4 86900209 86900259 -97388403 - MIR SINE MIR 0 262 211 208 266 125 0 chr4 86900326 86900390 -97388272 - MIR SINE MIR -171 91 20 2490 57 0 0 chr4 86900709 86901010 -97387652 - AluY SINE Alu -10 301 1 1861 122 0 0 chr4 86902177 86902439 -97386223 - AluSg SINE Alu -4 306 45 204 40 0 0 chr4 86902659 86902684 -97385978 + (T)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr4 86902697 86902718 -97385944 + AT_rich Low_complexity Low_complexity 1 21 0 2281 56 0 0 chr4 86902718 86903003 -97385659 - L1PA5 LINE L1 -4 6150 5866 1301 26 0 0 chr4 86903003 86903155 -97385507 + L1PA5 LINE L1 5714 5865 -290 573 291 11 34 chr4 86903241 86903509 -97385153 + MIR SINE MIR 1 262 0 518 267 200 19 chr4 86904153 86904363 -97384299 + MIR SINE MIR 10 257 -5 193 290 54 43 chr4 86904564 86904657 -97384005 + MIR SINE MIR 13 106 -156 1649 190 38 0 chr4 86905143 86905433 -97383229 - AluJo SINE Alu -11 301 1 25 0 0 0 chr4 86906209 86906234 -97382428 + AT_rich Low_complexity Low_complexity 1 25 0 216 268 0 18 chr4 86906810 86906866 -97381796 - MIR3 SINE MIR -33 175 121 21 0 0 0 chr4 86910282 86910303 -97378359 + AT_rich Low_complexity Low_complexity 1 21 0 191 188 0 0 chr4 86910454 86910486 -97378176 + MIR SINE MIR 86 117 -145 354 279 84 32 chr4 86911463 86911617 -97377045 + L2 LINE L2 3152 3313 0 227 271 0 29 chr4 86914649 86914719 -97373943 - L2 LINE L2 -5 3308 3241 485 278 176 58 chr4 86915770 86916270 -97372392 - MLT1L LTR MaLR -26 589 31 184 255 98 0 chr4 86916627 86916678 -97371984 + L2 LINE L2 1652 1707 -1607 21 57 0 0 chr4 86916902 86916937 -97371725 + AT_rich Low_complexity Low_complexity 1 35 0 29 28 0 0 chr4 86917095 86917131 -97371531 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr4 86917717 86917743 -97370919 + AT_rich Low_complexity Low_complexity 1 26 0 25 31 0 0 chr4 86917830 86917862 -97370800 + AT_rich Low_complexity Low_complexity 1 32 0 568 276 32 83 chr4 86918016 86918386 -97370276 - L1MC4 LINE L1 -220 7588 7329 240 303 18 9 chr4 86918360 86918469 -97370193 + L1MC4 LINE L1 7809 7918 -124 * 240 35 0 0 chr4 86918507 86918536 -97370126 + (TAGA)n Simple_repeat Simple_repeat 1 29 0 294 211 174 18 chr4 86918561 86918670 -97369992 + L1MC4 LINE L1 7917 8042 0 201 350 36 44 chr4 86918687 86918824 -97369838 + MIR3 SINE MIR 11 146 -62 392 321 52 15 chr4 86919372 86919506 -97369156 - L2 LINE L2 0 3272 3134 296 159 0 16 chr4 86920032 86920095 -97368567 + CT-rich Low_complexity Low_complexity 4 65 0 240 213 0 0 chr4 86920098 86920145 -97368517 + T-rich Low_complexity Low_complexity 3 49 0 1208 268 100 17 chr4 86920276 86920678 -97367984 + L1MC4 LINE L1 6465 6905 -1137 2223 98 0 0 chr4 86920678 86920964 -97367698 + AluSg SINE Alu 2 287 -23 1208 268 100 17 chr4 86920964 86920982 -97367680 + L1MC4 LINE L1 6905 6920 -1122 1251 155 3 103 chr4 86921017 86921308 -97367354 + AluJo SINE Alu 49 310 -2 2048 219 129 62 chr4 86921325 86921638 -97367024 + L1MC4 LINE L1 6977 7268 -774 2292 91 0 0 chr4 86921638 86921934 -97366728 + AluSc SINE Alu 1 296 -13 2048 219 129 62 chr4 86921934 86922501 -97366161 + L1MC4 LINE L1 7268 7916 -126 315 261 43 9 chr4 86922598 86922713 -97365949 + L1MC4 LINE L1 7920 8038 -4 26 30 0 0 chr4 86923748 86923781 -97364881 + AT_rich Low_complexity Low_complexity 1 33 0 6489 9 0 0 chr4 86923871 86924605 -97364057 - L1PA2 LINE L1 -2 6153 5420 9165 22 0 0 chr4 86924605 86925724 -97362938 + L1P LINE L1 4302 5420 -735 2539 143 7 26 chr4 86925742 86926197 -97362465 - L1PA16 LINE L1 -10 6156 5711 25 31 0 0 chr4 86927161 86927193 -97361469 + AT_rich Low_complexity Low_complexity 1 32 0 12165 237 38 18 chr4 86927670 86928009 -97360653 - L1PA16 LINE L1 -9 7595 7264 2192 113 13 0 chr4 86928009 86928310 -97360352 - AluSx SINE Alu -7 305 1 12165 237 38 18 chr4 86928310 86928927 -97359735 - L1PA16 LINE L1 -340 7264 6661 2271 134 22 8 chr4 86928927 86929286 -97359376 + THE1B LTR MaLR 1 364 0 12165 237 38 18 chr4 86929286 86933758 -97354904 - L1PA16 LINE L1 -943 6661 2182 253 330 9 26 chr4 86934423 86934538 -97354124 - L1PA16 LINE L1 -5277 2297 2185 226 321 24 0 chr4 86935058 86935142 -97353520 - L3 LINE CR1 -130 1447 1362 274 344 0 0 chr4 86935146 86935236 -97353426 - L2 LINE L2 0 3313 3224 21 0 0 0 chr4 86935255 86935276 -97353386 + AT_rich Low_complexity Low_complexity 1 21 0 186 275 0 0 chr4 86935288 86935328 -97353334 - MIR SINE MIR -5 257 218 198 0 0 0 chr4 86935329 86935351 -97353311 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 38953 79 7 12 chr4 86935351 86941532 -97347130 - L1PA5 LINE L1 -8 6146 2 523 296 122 31 chr4 86941664 86941860 -97346802 - MIR SINE MIR -26 236 23 351 276 15 45 chr4 86941954 86941997 -97346665 - L2 LINE L2 -969 2345 2302 2172 120 73 6 chr4 86941997 86942338 -97346324 + THE1B LTR MaLR 1 364 0 351 276 15 45 chr4 86942338 86942428 -97346234 - L2 LINE L2 -1012 2302 2216 244 312 7 71 chr4 86942440 86942581 -97346081 - L3 LINE CR1 -228 1349 1218 27 29 0 0 chr4 86942803 86942837 -97345825 + AT_rich Low_complexity Low_complexity 1 34 0 419 226 77 77 chr4 86942860 86943068 -97345594 + L1MC5 LINE L1 7701 7908 -53 229 80 160 13 chr4 86943374 86943449 -97345213 + (TTAAA)n Simple_repeat Simple_repeat 4 89 0 301 402 67 6 chr4 86943514 86943830 -97344832 + L2 LINE L2 1408 1742 -1572 243 0 0 0 chr4 86945479 86945506 -97343156 + (TG)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr4 86946367 86946389 -97342273 + AT_rich Low_complexity Low_complexity 1 22 0 34749 93 17 11 chr4 86946761 86947590 -97341072 - L1PA6 LINE L1 -5 6149 5327 207 88 0 0 chr4 86947590 86947624 -97341038 + (TTG)n Simple_repeat Simple_repeat 3 36 0 34749 93 17 11 chr4 86947624 86952920 -97335742 - L1PA6 LINE L1 -827 5327 12 389 220 0 33 chr4 86953151 86953242 -97335420 - L2 LINE L2 -1 3312 3225 2253 111 0 0 chr4 86954044 86954342 -97334320 - AluSg1 SINE Alu -11 298 1 303 365 56 16 chr4 86954537 86954663 -97333999 - MIR SINE MIR -67 141 10 5963 109 44 48 chr4 86954720 86956077 -97332585 + SVA Other Other 432 1386 0 1987 154 0 0 chr4 86956197 86956489 -97332173 + AluSx SINE Alu 1 292 -20 21 0 0 0 chr4 86956617 86956638 -97332024 + AT_rich Low_complexity Low_complexity 1 21 0 237 283 18 35 chr4 86957016 86957129 -97331533 + MLT1J LTR MaLR 391 501 -10 230 250 0 0 chr4 86959233 86959289 -97329373 - L2 LINE L2 -300 2972 2917 2411 88 0 0 chr4 86960171 86960478 -97328184 + AluY SINE Alu 1 307 -4 24 32 0 0 chr4 86961142 86961173 -97327489 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 86961290 86961311 -97327351 + AT_rich Low_complexity Low_complexity 1 21 0 1050 72 0 0 chr4 86961311 86961449 -97327213 - L1PA8 LINE L1 -8 6164 6027 28995 63 6 1 chr4 86961681 86966467 -97322195 - L1PA5 LINE L1 0 6154 1344 20480 61 15 3 chr4 87016467 87019058 -97269604 - HERVK9 LTR ERVK -2180 3736 1114 4320 71 12 2 chr4 87019060 87019622 -97269040 - HERVK9 LTR ERVK -5348 568 1 3664 109 0 4 chr4 87019622 87020135 -97268527 - MER9 LTR ERVK 0 511 1 1652 139 56 0 chr4 87020135 87020402 -97268260 - L1PA5 LINE L1 -5864 282 1 2097 122 0 10 chr4 87020649 87020961 -97267701 - AluSq SINE Alu -4 309 1 23 33 0 0 chr4 87020970 87021000 -97267662 + AT_rich Low_complexity Low_complexity 1 30 0 39 0 0 0 chr4 87021187 87021226 -97267436 + AT_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chr4 87022916 87022952 -97265710 + AT_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr4 87022979 87023011 -97265651 + AT_rich Low_complexity Low_complexity 1 32 0 459 209 202 8 chr4 87024015 87024144 -97264518 + MIR SINE MIR 107 260 -2 220 425 8 0 chr4 87024288 87024422 -97264240 + L2 LINE L2 1528 1662 -1652 405 238 0 67 chr4 87024616 87024721 -97263941 + LTR67 LTR ERVL 80 177 -380 586 201 30 37 chr4 87024874 87025038 -97263624 + LTR67 LTR ERVL 391 553 -4 185 280 136 18 chr4 87026555 87026651 -97262011 + MIR SINE MIR 42 145 -96 1813 147 47 0 chr4 87027085 87027364 -97261298 - AluSx SINE Alu -18 294 3 189 0 0 0 chr4 87027783 87027804 -97260858 + (CA)n Simple_repeat Simple_repeat 2 22 0 678 24 0 0 chr4 87029027 87029110 -97259552 - AluY SINE Alu -211 100 18 1363 84 44 0 chr4 87029110 87029313 -97259349 + AluY SINE Alu 95 306 -5 877 204 26 0 chr4 87030553 87030744 -97257918 + Charlie5 DNA MER1_type 27 222 -2390 300 197 0 0 chr4 87030765 87030841 -97257821 + Charlie5 DNA MER1_type 2506 2581 -31 226 344 113 33 chr4 87030929 87031080 -97257582 + L2 LINE L2 3110 3272 0 759 313 81 50 chr4 87031903 87032421 -97256241 - MLT1K LTR MaLR -42 546 13 29 0 0 0 chr4 87032636 87032665 -97255997 + AT_rich Low_complexity Low_complexity 1 29 0 24 77 0 0 chr4 87033335 87033387 -97255275 + AT_rich Low_complexity Low_complexity 1 52 0 234 278 41 41 chr4 87034120 87034217 -97254445 - MIR SINE MIR -4 258 162 957 142 6 11 chr4 87036507 87036690 -97251972 - L1P2 LINE L1 -594 5561 5380 338 256 128 38 chr4 87036806 87036939 -97251723 - L2 LINE L2 -4 3309 3165 23 0 0 0 chr4 87037395 87037418 -97251244 + AT_rich Low_complexity Low_complexity 1 23 0 310 200 0 32 chr4 87039030 87039125 -97249537 + CT-rich Low_complexity Low_complexity 3 94 0 268 337 12 0 chr4 87039259 87039345 -97249317 - L2 LINE L2 -12 3260 3174 205 234 21 0 chr4 87039954 87040001 -97248661 - L2 LINE L2 -78 3235 3188 8677 183 16 6 chr4 87040633 87043240 -97245422 - L1PA13 LINE L1 -7 6156 3413 2622 272 110 21 chr4 87043250 87044398 -97244264 + L1MC4 LINE L1 6650 7899 -143 732 280 35 57 chr4 87044475 87044793 -97243869 - L2 LINE L2 -557 2757 2447 379 260 226 6 chr4 87045028 87045205 -97243457 + MIR SINE MIR 2 217 -45 2857 124 2 2 chr4 87046157 87046592 -97242070 - L1PA16 LINE L1 -9 6157 5723 230 67 0 0 chr4 87046593 87046623 -97242039 + L1M1 LINE L1 5851 5880 -422 229 330 30 10 chr4 87047966 87048066 -97240596 + L2 LINE L2 3179 3280 -33 3174 98 16 2 chr4 87048768 87049215 -97239447 - MLT2A2 LTR ERVL 0 453 1 2353 67 0 3 chr4 87049744 87050041 -97238621 - AluY SINE Alu -15 296 1 6167 133 98 116 chr4 87050375 87051958 -97236704 - pTR5 LTR ERV1 -143 2295 741 573 305 86 5 chr4 87052338 87052548 -97236114 + MLT1K LTR MaLR 321 547 -41 1926 136 41 0 chr4 87052730 87053025 -97235637 - AluSx SINE Alu -5 307 1 622 154 0 17 chr4 87054212 87054329 -97234333 + L1MA9 LINE L1 6162 6276 -36 279 405 38 0 chr4 87055130 87055261 -97233401 - L2 LINE L2 -37 3235 3100 21 36 0 0 chr4 87055346 87055374 -97233288 + AT_rich Low_complexity Low_complexity 1 28 0 950 198 20 0 chr4 87056121 87056318 -97232344 + MER3 DNA MER1_type 5 205 -4 23 54 0 0 chr4 87057697 87057734 -97230928 + AT_rich Low_complexity Low_complexity 1 37 0 1021 53 0 0 chr4 87058321 87058453 -97230209 - L1PA4 LINE L1 -3 6152 6021 500 308 76 40 chr4 87059117 87059367 -97229295 + MIR SINE MIR 4 262 0 231 88 0 0 chr4 87059748 87059782 -97228880 + (TG)n Simple_repeat Simple_repeat 1 34 0 1147 168 28 28 chr4 87059825 87060075 -97228587 - L1PA16 LINE L1 -5 6161 5912 23 33 0 0 chr4 87060687 87060717 -97227945 + AT_rich Low_complexity Low_complexity 1 30 0 22 80 0 0 chr4 87060793 87060843 -97227819 + AT_rich Low_complexity Low_complexity 1 50 0 361 313 62 39 chr4 87061648 87061821 -97226841 + HAL1b LINE L1 316 498 -850 3585 87 14 0 chr4 87061821 87062317 -97226345 + L1PA8 LINE L1 5665 6167 -5 361 313 62 39 chr4 87062317 87062402 -97226260 + HAL1b LINE L1 498 580 -768 26 30 0 0 chr4 87062999 87063032 -97225630 + AT_rich Low_complexity Low_complexity 1 33 0 376 301 56 86 chr4 87063165 87063586 -97225076 + L1MC/D LINE L1 5403 5811 -355 907 321 35 8 chr4 87064442 87064816 -97223846 + L1MC4a LINE L1 5548 5931 -1877 223 256 0 0 chr4 87065421 87065464 -97223198 + polypurine Low_complexity Low_complexity 1 43 0 21 36 0 0 chr4 87065586 87065614 -97223048 + AT_rich Low_complexity Low_complexity 1 28 0 319 333 114 22 chr4 87067015 87067243 -97221419 - L3 LINE CR1 -279 1298 1050 257 267 120 0 chr4 87067274 87067349 -97221313 + MIR SINE MIR 2 85 -177 210 295 0 0 chr4 87067391 87067452 -97221210 + MIR SINE MIR 189 249 -13 2381 73 10 3 chr4 87068522 87068825 -97219837 + AluSc SINE Alu 1 305 -4 24 32 0 0 chr4 87069698 87069729 -97218933 + AT_rich Low_complexity Low_complexity 1 31 0 203 114 23 0 chr4 87070017 87070061 -97218601 + GA-rich Low_complexity Low_complexity 1 45 0 969 261 173 33 chr4 87070355 87070886 -97217776 + MLT1E1 LTR MaLR 1 654 0 26 0 0 0 chr4 87070936 87070962 -97217700 + AT_rich Low_complexity Low_complexity 1 26 0 720 276 75 59 chr4 87071103 87071145 -97217517 - MIR SINE MIR -12 250 210 2046 115 0 7 chr4 87071145 87071441 -97217221 - AluYa5 SINE Alu -17 294 1 720 276 75 59 chr4 87071441 87071637 -97217025 - MIR SINE MIR -52 210 8 21 0 0 0 chr4 87072214 87072235 -97216427 + AT_rich Low_complexity Low_complexity 1 21 0 2417 63 0 3 chr4 87072392 87072691 -97215971 - AluY SINE Alu -13 298 1 219 340 132 54 chr4 87073055 87073393 -97215269 - L2 LINE L2 -157 3156 2796 1148 248 41 6 chr4 87073534 87073897 -97214765 + L1MB3 LINE L1 4964 5339 -807 17965 164 62 19 chr4 87073901 87076763 -97211899 + L1M1 LINE L1 15 3043 -4522 2235 104 3 0 chr4 87076763 87077061 -97211601 - AluSp SINE Alu -14 299 1 17965 164 62 19 chr4 87077061 87077539 -97211123 + L1M1 LINE L1 3043 3499 -4066 1770 43 0 17 chr4 87077539 87077770 -97210892 + L1M1 LINE L1 5581 5807 -495 595 144 0 0 chr4 87077770 87077864 -97210798 + L1MA2 LINE L1 6208 6304 0 378 61 0 0 chr4 87077874 87077923 -97210739 + (CA)n Simple_repeat Simple_repeat 1 49 0 559 196 49 7 chr4 87077924 87078067 -97210595 + L1MB3 LINE L1 5367 5515 -829 2494 54 0 3 chr4 87078085 87078382 -97210280 + AluY SINE Alu 1 296 -15 4762 167 121 60 chr4 87078384 87078652 -97210010 + L1MC3 LINE L1 6411 6661 -1124 1921 153 7 3 chr4 87078652 87078959 -97209703 + AluSx SINE Alu 1 308 -4 4762 167 121 60 chr4 87078959 87079985 -97208677 + L1MC3 LINE L1 6661 7785 0 235 81 0 0 chr4 87080177 87080214 -97208448 + L1MC3 LINE L1 7733 7769 -16 259 333 69 10 chr4 87080880 87080982 -97207680 + L2 LINE L2 3139 3246 -26 24 0 0 0 chr4 87081628 87081652 -97207010 + AT_rich Low_complexity Low_complexity 1 24 0 363 314 64 21 chr4 87082037 87082177 -97206485 - MIR SINE MIR -32 230 85 1526 192 43 26 chr4 87082183 87082532 -97206130 - MLT1A1 LTR MaLR -10 355 1 5525 161 56 41 chr4 87082958 87084109 -97204553 + L1MEd LINE L1 1296 2452 -3930 2267 157 30 25 chr4 87084109 87084541 -97204121 + Tigger2a DNA MER2_type 1 434 0 5525 161 56 41 chr4 87084541 87084703 -97203959 + L1MEd LINE L1 2452 2610 -3772 1986 128 43 9 chr4 87084752 87085129 -97203533 - MSTA LTR MaLR 0 428 1 698 204 44 17 chr4 87085186 87085367 -97203295 + L1MEd LINE L1 2779 2964 -3418 1586 226 40 3 chr4 87085408 87085784 -97202878 + L1MB3 LINE L1 5782 6171 -12 577 210 34 0 chr4 87085980 87086099 -97202563 - L1MB3 LINE L1 -181 6002 5880 273 333 222 0 chr4 87086232 87086385 -97202277 + MIR SINE MIR 10 196 -66 5038 143 42 53 chr4 87086655 87087738 -97200924 + MER11C LTR ERVK 1 1071 0 306 0 0 0 chr4 87088539 87088573 -97200089 + (CA)n Simple_repeat Simple_repeat 2 35 0 301 238 336 7 chr4 87089824 87089967 -97198695 - MIR SINE MIR -14 248 59 3536 56 5 0 chr4 87090538 87090982 -97197680 - L1PA7 LINE L1 -26 6128 5683 270 305 12 0 chr4 87091501 87091583 -97197079 - MIR SINE MIR -75 187 105 2207 70 0 11 chr4 87091813 87092133 -97196529 - AluY SINE Alu 0 317 1 493 285 14 21 chr4 87092135 87092279 -97196383 + MER5B DNA MER1_type 36 178 0 266 298 57 64 chr4 87092390 87092525 -97196137 - L3 LINE CR1 -330 1247 1114 247 350 115 27 chr4 87092525 87092708 -97195954 + MIR SINE MIR 2 200 -62 283 321 61 30 chr4 87093044 87093175 -97195487 + MIR SINE MIR 82 216 -46 394 270 221 5 chr4 87093199 87093403 -97195259 + MIR SINE MIR 14 261 -1 21 36 0 0 chr4 87093404 87093432 -97195230 + AT_rich Low_complexity Low_complexity 1 28 0 398 315 40 7 chr4 87094001 87094150 -97194512 + MIR SINE MIR 53 206 -56 23 68 0 0 chr4 87094824 87094868 -97193794 + AT_rich Low_complexity Low_complexity 1 44 0 568 159 45 0 chr4 87095752 87095840 -97192822 - 5S rRNA rRNA -29 92 1 29 47 0 0 chr4 87095937 87095980 -97192682 + AT_rich Low_complexity Low_complexity 1 43 0 2010 163 9 6 chr4 87096896 87097246 -97191416 - THE1A LTR MaLR 0 355 5 2375 63 3 19 chr4 87097305 87097621 -97191041 - AluY SINE Alu 0 311 1 23 0 0 0 chr4 87097787 87097810 -97190852 + AT_rich Low_complexity Low_complexity 1 23 0 2083 109 119 24 chr4 87099617 87100028 -97188634 - LTR7 LTR ERV1 0 450 1 648 211 201 72 chr4 87100954 87101233 -97187429 + MER46C DNA MER2_type 15 329 -9 22 0 0 0 chr4 87102130 87102152 -97186510 + AT_rich Low_complexity Low_complexity 1 22 0 2454 104 0 24 chr4 87102340 87102716 -97185946 - L1PB1 LINE L1 0 6151 5785 447 148 0 30 chr4 87102717 87102818 -97185844 + (TA)n Simple_repeat Simple_repeat 2 99 0 1669 108 4 0 chr4 87102823 87103054 -97185608 - AluSq SINE Alu -11 302 71 6767 179 13 6 chr4 87103054 87104973 -97183689 - L1PB1 LINE L1 -368 5783 3853 4944 164 15 19 chr4 87105255 87105894 -97182768 - L1MA4A LINE L1 0 6303 5663 2393 61 0 3 chr4 87105894 87106191 -97182471 + AluY SINE Alu 1 296 -15 4944 164 15 19 chr4 87106191 87107241 -97181421 - L1MA4A LINE L1 -640 5663 4641 1387 180 59 16 chr4 87107364 87107669 -97180993 + MER7A DNA MER2_type 31 346 0 25 31 0 0 chr4 87107866 87107898 -97180764 + AT_rich Low_complexity Low_complexity 1 32 0 1987 161 217 0 chr4 87108330 87108740 -97179922 - Tigger1 DNA MER2_type -341 2077 1579 6529 141 5 4 chr4 87108853 87109867 -97178795 + Harlequin LTR ERV1 5882 6896 0 3828 48 25 0 chr4 87109868 87110345 -97178317 + LTR2B LTR ERV1 2 490 0 505 278 129 27 chr4 87110360 87110694 -97177968 + L2 LINE L2 2934 3301 -12 291 246 8 31 chr4 87112652 87112782 -97175880 + C-rich Low_complexity Low_complexity 4 130 0 565 253 270 20 chr4 87112898 87113309 -97175353 + L2 LINE L2 2791 3313 0 192 77 0 0 chr4 87114335 87114361 -97174301 + (TC)n Simple_repeat Simple_repeat 2 27 0 3071 240 108 104 chr4 87115013 87117096 -97171566 - L1MC4a LINE L1 -96 7712 5621 4206 135 1 19 chr4 87117209 87117874 -97170788 - L1P LINE L1 -5491 655 3 1749 157 34 29 chr4 87117874 87118225 -97170437 + Tigger1 DNA MER2_type 2066 2418 0 552 274 0 0 chr4 87118609 87118726 -97169936 + MER58B DNA MER1_type 223 339 -2 189 0 0 0 chr4 87119354 87119375 -97169287 + (A)n Simple_repeat Simple_repeat 1 21 0 491 325 35 45 chr4 87121121 87121432 -97167230 + MLT1I LTR MaLR 74 381 -28 1114 101 28 17 chr4 87121699 87121878 -97166784 - AluSc SINE Alu -2 307 127 274 240 110 0 chr4 87122233 87122333 -97166329 + L1MC4 LINE L1 7914 8024 -18 609 165 0 0 chr4 87123081 87123172 -97165490 - AluS SINE Alu -221 91 1 1698 161 26 0 chr4 87123373 87123678 -97164984 - L1MC/D LINE L1 -652 5681 5369 645 201 25 25 chr4 87123701 87123860 -97164802 - L1MC/D LINE L1 -1356 4790 4632 5145 227 71 40 chr4 87123868 87125553 -97163109 - L1MC4a LINE L1 -780 5366 3629 258 293 0 0 chr4 87125598 87125680 -97162982 - L1MC4a LINE L1 -2521 3625 3544 10071 208 38 29 chr4 87125782 87128208 -97160454 - L1 LINE L1 -1514 5334 2856 194 0 0 37 chr4 87128208 87128235 -97160427 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 10071 208 38 29 chr4 87128235 87129262 -97159400 - L1 LINE L1 -3992 2856 1840 10231 211 32 15 chr4 87129533 87132265 -97156397 - L1M2 LINE L1 -3936 2912 2 23 0 0 0 chr4 87134059 87134082 -97154580 + AT_rich Low_complexity Low_complexity 1 23 0 1991 103 0 4 chr4 87136557 87136818 -97151844 - AluSx SINE Alu -44 268 9 2523 134 14 60 chr4 87136828 87137341 -97151321 - L1MA3 LINE L1 -163 6142 5654 8890 158 9 11 chr4 87138908 87140378 -97148284 + Tigger1 DNA MER2_type 2 1469 -949 1885 134 14 10 chr4 87140378 87140669 -97147993 + AluSx SINE Alu 1 292 -20 8890 158 9 11 chr4 87140669 87140713 -97147949 + Tigger1 DNA MER2_type 1469 1512 -906 669 262 58 9 chr4 87140818 87141043 -97147619 + MLT1C LTR MaLR 232 467 0 22 35 0 0 chr4 87141747 87141776 -97146886 + AT_rich Low_complexity Low_complexity 1 29 0 211 305 148 23 chr4 87143302 87143430 -97145232 + L2 LINE L2 2892 3035 -237 1224 172 25 8 chr4 87143704 87143942 -97144720 + MSTA LTR MaLR 3 244 -184 308 240 0 62 chr4 87147323 87147419 -97141243 + L1MC4 LINE L1 6614 6703 -1339 255 125 0 0 chr4 87147419 87147459 -97141203 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 415 310 146 36 chr4 87147471 87148006 -97140656 + L1MCa LINE L1 32 610 -5813 1728 285 56 26 chr4 87148093 87149488 -97139174 + L1MCa LINE L1 814 2696 -4246 36 40 0 0 chr4 87150306 87150356 -97138306 + AT_rich Low_complexity Low_complexity 1 50 0 2494 146 17 2 chr4 87150629 87151047 -97137615 - MSTA LTR MaLR 0 428 5 211 305 148 23 chr4 87151323 87151451 -97137211 - L2 LINE L2 -237 3035 2892 306 266 103 75 chr4 87153733 87153947 -97134715 - MLT1C LTR MaLR -226 241 22 27 49 0 0 chr4 87154607 87154648 -97134014 + AT_rich Low_complexity Low_complexity 1 41 0 377 228 14 5 chr4 87155520 87155737 -97132925 + (TA)n Simple_repeat Simple_repeat 1 219 0 27 29 0 0 chr4 87155986 87156020 -97132642 + AT_rich Low_complexity Low_complexity 1 34 0 510 17 0 0 chr4 87156436 87156495 -97132167 + (TG)n Simple_repeat Simple_repeat 2 60 0 245 204 10 102 chr4 87157978 87158076 -97130586 + MER5A DNA MER1_type 1 89 -100 417 234 22 58 chr4 87158246 87158383 -97130279 + MER5A DNA MER1_type 58 189 0 24 0 0 0 chr4 87158412 87158436 -97130226 + AT_rich Low_complexity Low_complexity 1 24 0 427 284 47 54 chr4 87158679 87158827 -97129835 - MIR SINE MIR 0 262 116 21 36 0 0 chr4 87159054 87159082 -97129580 + AT_rich Low_complexity Low_complexity 1 28 0 196 75 25 25 chr4 87160793 87160833 -97127829 + (TA)n Simple_repeat Simple_repeat 1 40 0 330 87 0 0 chr4 87161214 87161260 -97127402 + (TTCC)n Simple_repeat Simple_repeat 2 47 0 1120 314 84 41 chr4 87161368 87162079 -97126583 + L2 LINE L2 2235 2976 -338 557 311 31 10 chr4 87162127 87162320 -97126342 + L2 LINE L2 3113 3309 -4 894 166 66 17 chr4 87162593 87162774 -97125888 + L1MC3 LINE L1 7473 7662 -123 1654 194 0 28 chr4 87162776 87163095 -97125567 + AluJb SINE Alu 1 310 -2 23 0 0 0 chr4 87163228 87163251 -97125411 + AT_rich Low_complexity Low_complexity 1 23 0 258 105 0 0 chr4 87164920 87164958 -97123704 + (TG)n Simple_repeat Simple_repeat 2 39 0 2398 109 6 19 chr4 87164958 87165324 -97123338 - THE1B LTR MaLR -3 361 1 399 21 0 0 chr4 87165324 87165372 -97123290 + (TG)n Simple_repeat Simple_repeat 2 49 0 192 125 0 0 chr4 87168625 87168657 -97120005 + (TG)n Simple_repeat Simple_repeat 1 32 0 977 179 52 148 chr4 87169109 87169399 -97119263 - MLT1C LTR MaLR 0 467 129 1070 71 48 30 chr4 87169585 87169753 -97118909 + MER30 DNA MER1_type 19 189 -41 1279 81 70 5 chr4 87170054 87170239 -97118423 - MER30 DNA MER1_type -33 197 1 22 35 0 0 chr4 87170915 87170944 -97117718 + AT_rich Low_complexity Low_complexity 1 29 0 310 365 17 17 chr4 87171686 87171801 -97116861 - L2 LINE L2 -15 3257 3143 476 263 120 47 chr4 87171893 87171997 -97116665 - Charlie2 DNA MER1_type 0 2862 2767 559 192 8 8 chr4 87171997 87172117 -97116545 + L1PB4 LINE L1 6025 6144 -12 476 263 120 47 chr4 87172117 87172521 -97116141 - Charlie2 DNA MER1_type -95 2767 2317 509 247 52 107 chr4 87172841 87173112 -97115550 + MLT1H LTR MaLR 114 369 -180 206 289 180 0 chr4 87173280 87173408 -97115254 + L2 LINE L2 2295 2445 -869 1002 260 62 17 chr4 87174120 87174408 -97114254 - LTR16C LTR ERVL -5 486 186 231 125 0 0 chr4 87174419 87174459 -97114203 + (TG)n Simple_repeat Simple_repeat 2 41 0 265 266 71 35 chr4 87174632 87174745 -97113917 + L2 LINE L2 3156 3272 0 305 264 0 0 chr4 87174783 87174855 -97113807 - MIR SINE MIR -7 255 184 654 314 83 4 chr4 87175019 87175151 -97113511 + MIR SINE MIR 1 121 -141 2380 142 0 6 chr4 87175151 87175517 -97113145 + THE1B LTR MaLR 1 364 0 654 314 83 4 chr4 87175517 87175626 -97113036 + MIR SINE MIR 121 261 -1 644 271 247 23 chr4 87175843 87176092 -97112570 + L2 LINE L2 2449 2641 -672 1788 145 25 41 chr4 87176092 87176458 -97112204 + L1MA7 LINE L1 5932 6291 0 644 271 247 23 chr4 87176458 87176842 -97111820 + L2 LINE L2 2641 3298 -15 396 111 0 0 chr4 87176860 87176923 -97111739 + (TG)n Simple_repeat Simple_repeat 1 63 0 382 305 92 17 chr4 87177706 87177880 -97110782 + MIR SINE MIR 6 192 -70 180 297 94 0 chr4 87178071 87178135 -97110527 - L2 LINE L2 -6 3307 3238 2746 191 60 2 chr4 87179114 87179633 -97109029 + Tigger7 DNA MER2_type 1 549 -1938 21 36 0 0 chr4 87180938 87180966 -97107696 + AT_rich Low_complexity Low_complexity 1 28 0 222 287 30 98 chr4 87181192 87181356 -97107306 + L2 LINE L2 3161 3313 0 29 0 0 0 chr4 87181484 87181513 -97107149 + AT_rich Low_complexity Low_complexity 1 29 0 321 268 54 36 chr4 87181788 87181900 -97106762 + L2 LINE L2 3200 3313 0 188 354 51 0 chr4 87183137 87183216 -97105446 - MIR3 SINE MIR -19 189 107 464 111 0 49 chr4 87183882 87183963 -97104699 + THE1B-int LTR MaLR 1504 1580 0 767 124 175 7 chr4 87183963 87184100 -97104562 + THE1B LTR MaLR 1 160 -268 271 219 82 27 chr4 87184157 87184230 -97104432 + MER91A DNA MER1_type 119 195 -1 2097 141 126 5 chr4 87185249 87185631 -97103031 - MSTA LTR MaLR 0 428 1 7489 147 9 123 chr4 87185631 87187413 -97101249 - MSTA-int LTR MaLR 0 1580 3 2001 148 137 8 chr4 87187415 87187794 -97100868 - MSTA LTR MaLR 0 428 1 1412 206 32 3 chr4 87187997 87188307 -97100355 + THE1B LTR MaLR 1 319 -45 22 35 0 0 chr4 87188817 87188846 -97099816 + AT_rich Low_complexity Low_complexity 1 29 0 982 126 0 0 chr4 87189715 87189858 -97098804 + THE1B LTR MaLR 221 363 -1 296 301 134 5 chr4 87190006 87190192 -97098470 - L1M4 LINE L1 -1906 4240 4031 1094 199 33 48 chr4 87190237 87190508 -97098154 - MLT1A1 LTR MaLR -31 334 68 268 280 106 26 chr4 87190531 87190910 -97097752 - L1M4 LINE L1 -2797 3349 2941 1249 245 12 13 chr4 87191512 87191852 -97096810 + Tigger7 DNA MER2_type 1 2491 0 350 327 10 0 chr4 87191857 87191958 -97096704 - MIR3 SINE MIR -8 200 99 239 322 161 6 chr4 87192102 87192282 -97096380 + L2 LINE L2 2754 2961 -353 282 115 0 0 chr4 87194204 87194256 -97094406 + (CA)n Simple_repeat Simple_repeat 2 53 0 22 0 0 0 chr4 87197655 87197677 -97090985 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 87198731 87198752 -97089910 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr4 87199166 87199205 -97089457 + AT_rich Low_complexity Low_complexity 1 39 0 28572 54 2 2 chr4 87199477 87204105 -97084557 - L1P2 LINE L1 -713 5441 815 14322 111 16 12 chr4 87204205 87206360 -97082302 - Harlequin LTR ERV1 -1382 5514 3352 6886 53 25 12 chr4 87206359 87207349 -97081313 - Harlequin LTR ERV1 -4322 2574 1572 * 4131 92 29 37 chr4 87207333 87208175 -97080487 - Harlequin LTR ERV1 -5969 927 1 * 3807 45 21 6 chr4 87208175 87208658 -97080004 - LTR2B LTR ERV1 0 490 1 217 298 269 18 chr4 87209114 87209285 -97079377 - MIR SINE MIR -29 233 20 21 36 0 0 chr4 87210278 87210306 -97078356 + AT_rich Low_complexity Low_complexity 1 28 0 33 43 0 0 chr4 87210437 87210484 -97078178 + AT_rich Low_complexity Low_complexity 1 47 0 478 183 148 134 chr4 87210755 87210856 -97077806 - L1MC5 LINE L1 -81 7880 7782 2149 95 0 7 chr4 87210856 87211140 -97077522 - AluSq SINE Alu -29 284 3 478 183 148 134 chr4 87211140 87211410 -97077252 - L1MC5 LINE L1 -179 7782 7504 233 351 55 12 chr4 87211470 87211635 -97077027 - L1MC4a LINE L1 -1219 6589 6418 1125 197 17 77 chr4 87211833 87212133 -97076529 + AluJb SINE Alu 1 282 -30 1655 157 55 3 chr4 87213253 87213546 -97075116 - AluSx SINE Alu -4 308 1 590 330 19 9 chr4 87213825 87214040 -97074622 - MIR SINE MIR -41 221 5 24 32 0 0 chr4 87214652 87214683 -97073979 + AT_rich Low_complexity Low_complexity 1 31 0 22 80 0 0 chr4 87214766 87214816 -97073846 + AT_rich Low_complexity Low_complexity 1 50 0 34 24 0 0 chr4 87214950 87214991 -97073671 + AT_rich Low_complexity Low_complexity 1 41 0 891 262 93 3 chr4 87215379 87215711 -97072951 - MER113 DNA MER1_type? -155 366 5 1681 174 70 12 chr4 87215737 87216081 -97072581 + MLT1A1 LTR MaLR 1 364 -1 1905 146 16 3 chr4 87216817 87217125 -97071537 + AluSx SINE Alu 1 312 0 929 200 49 9 chr4 87217223 87217448 -97071214 - L1MC2 LINE L1 -9 6335 6102 745 136 34 0 chr4 87217549 87217667 -97070995 + AluSg/x SINE Alu 164 285 -27 186 71 0 0 chr4 87217667 87217695 -97070967 + (CTAAA)n Simple_repeat Simple_repeat 3 30 0 27 73 0 0 chr4 87218152 87218207 -97070455 + AT_rich Low_complexity Low_complexity 1 55 0 21 36 0 0 chr4 87218963 87218991 -97069671 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr4 87219177 87219215 -97069447 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr4 87219513 87219543 -97069119 + AT_rich Low_complexity Low_complexity 1 30 0 2303 229 103 42 chr4 87219828 87220699 -97067963 + L1MC2 LINE L1 1 879 -5166 * 6838 213 32 29 chr4 87220689 87220729 -97067933 + L1MC2 LINE L1 3579 3617 -3145 2114 88 7 3 chr4 87220729 87221026 -97067636 + AluY SINE Alu 1 298 -13 6838 213 32 29 chr4 87221026 87223624 -97065038 + L1MC2 LINE L1 3617 6230 -532 2001 104 32 0 chr4 87223624 87223903 -97064759 + AluSc SINE Alu 3 290 -19 6838 213 32 29 chr4 87223903 87224229 -97064433 + L1MC2 LINE L1 6230 6553 -209 219 191 32 0 chr4 87274241 87274308 -97014354 + (CCCA)n Simple_repeat Simple_repeat 1 69 0 201 237 17 0 chr4 87274540 87274599 -97014063 + (CACAC)n Simple_repeat Simple_repeat 2 61 0 447 176 0 0 chr4 87274700 87274774 -97013888 - AluJ/FLAM SINE Alu -238 74 1 645 265 36 5 chr4 87274776 87274999 -97013663 - L1M4 LINE L1 -3252 2894 2665 284 225 0 11 chr4 87275091 87275180 -97013482 + (CATATA)n Simple_repeat Simple_repeat 2 89 0 273 98 0 0 chr4 87275530 87275571 -97013091 + (CA)n Simple_repeat Simple_repeat 2 42 0 639 231 43 32 chr4 87276030 87276216 -97012446 - MER5A DNA MER1_type -1 188 1 27 49 0 0 chr4 87277546 87277587 -97011075 + AT_rich Low_complexity Low_complexity 1 41 0 205 291 157 22 chr4 87280355 87280489 -97008173 - L2 LINE L2 0 3272 3121 199 200 18 18 chr4 87280832 87280887 -97007775 - L2 LINE L2 -203 3069 3015 27 73 0 0 chr4 87280888 87280943 -97007719 + AT_rich Low_complexity Low_complexity 1 55 0 390 271 139 42 chr4 87281208 87281374 -97007288 + MIR SINE MIR 75 256 -6 29 47 0 0 chr4 87281581 87281624 -97007038 + AT_rich Low_complexity Low_complexity 1 43 0 338 303 81 52 chr4 87282729 87282940 -97005722 - HAL1 LINE L1 -2260 247 31 249 101 47 54 chr4 87284429 87284577 -97004085 + (TA)n Simple_repeat Simple_repeat 1 147 0 23163 65 2 2 chr4 87284578 87288425 -97000237 - L1PA5 LINE L1 -6 6148 2298 2388 61 3 0 chr4 87288425 87288737 -96999925 + L1P LINE L1 4934 5246 -900 * 2607 169 32 7 chr4 87288725 87289186 -96999476 - L1PA5 LINE L1 -5671 475 3 231 250 67 19 chr4 87289188 87289292 -96999370 - MIR SINE MIR -58 204 96 332 93 0 37 chr4 87289299 87289353 -96999309 + L1P LINE L1 2193 2244 -3902 1863 182 96 13 chr4 87290685 87291070 -96997592 - MSTB1 LTR MaLR -13 419 3 435 295 17 46 chr4 87291070 87291241 -96997421 - LTR16C LTR ERVL -230 261 96 1727 113 31 0 chr4 87292856 87293113 -96995549 - AluSx SINE Alu -5 307 43 29 28 0 0 chr4 87294218 87294254 -96994408 + AT_rich Low_complexity Low_complexity 1 36 0 366 23 0 0 chr4 87294657 87294700 -96993962 + (TA)n Simple_repeat Simple_repeat 1 43 0 402 198 74 41 chr4 87295014 87295135 -96993527 + MLT1E2 LTR MaLR 60 184 -442 3519 287 41 33 chr4 87295142 87296334 -96992328 + L1MA9 LINE L1 1 1182 -4852 1483 185 3 58 chr4 87296334 87296647 -96992015 + AluJo SINE Alu 1 296 -16 3519 287 41 33 chr4 87296647 87298342 -96990320 + L1MA9 LINE L1 1182 2610 -3424 * 5516 148 22 8 chr4 87298327 87299299 -96989363 - L1PA11 LINE L1 -1739 4407 3423 6027 110 23 2 chr4 87299299 87301037 -96987625 + L1PA11 LINE L1 4415 6169 -5 7877 185 42 18 chr4 87301044 87304320 -96984342 + L1MA9 LINE L1 2594 5969 -231 1859 246 93 21 chr4 87304324 87304841 -96983821 - MLT2B3 LTR ERVL 0 554 1 463 226 38 0 chr4 87304845 87304951 -96983711 + L1MA9 LINE L1 6069 6178 -22 35 24 0 0 chr4 87304951 87304993 -96983669 + AT_rich Low_complexity Low_complexity 1 42 0 1347 232 87 6 chr4 87305078 87305401 -96983261 + MLT1E2 LTR MaLR 270 618 -8 1959 135 0 14 chr4 87306317 87306614 -96982048 + AluSq SINE Alu 1 293 -20 2846 3 0 3 chr4 87307175 87307490 -96981172 - AluYb8 SINE Alu -4 314 1 664 230 103 6 chr4 87307698 87307872 -96980790 + MIR SINE MIR 70 260 -2 1183 167 31 0 chr4 87308841 87309069 -96979593 + L1MB1 LINE L1 5929 6163 -5 4624 76 3 0 chr4 87309069 87309675 -96978987 - L1PA7 LINE L1 -5 6149 5541 21 0 0 0 chr4 87309969 87309990 -96978672 + AT_rich Low_complexity Low_complexity 1 21 0 182 200 57 0 chr4 87309994 87310029 -96978633 - MIR SINE MIR -8 254 218 737 275 70 0 chr4 87310038 87310267 -96978395 - MIR SINE MIR -11 251 7 245 344 3 10 chr4 87310582 87310678 -96977984 + MIR3 SINE MIR 74 170 -38 238 263 150 0 chr4 87310763 87310843 -96977819 + MIR SINE MIR 96 187 -75 25 51 0 0 chr4 87310886 87310925 -96977737 + AT_rich Low_complexity Low_complexity 1 39 0 2234 69 0 7 chr4 87314129 87314452 -96974210 + AluY SINE Alu 1 311 0 2143 93 4 0 chr4 87314661 87314941 -96973721 - AluSp SINE Alu -32 281 1 928 295 96 28 chr4 87314949 87315110 -96973552 - L1MC4a LINE L1 -1879 5929 5780 1672 150 72 33 chr4 87315110 87315471 -96973191 + THE1C LTR MaLR 1 375 0 928 295 96 28 chr4 87315471 87315942 -96972720 - L1MC4a LINE L1 -2028 5780 5254 23 68 0 0 chr4 87315998 87316042 -96972620 + AT_rich Low_complexity Low_complexity 1 44 0 353 297 34 61 chr4 87316318 87316372 -96972290 + L2 LINE L2 3129 3183 -89 2911 166 45 40 chr4 87316372 87316970 -96971692 + MER7C DNA MER2_type 2 602 0 353 297 34 61 chr4 87316970 87317063 -96971599 + L2 LINE L2 3183 3272 0 1802 162 3 10 chr4 87318331 87318628 -96970034 + AluJb SINE Alu 1 295 -17 205 367 0 0 chr4 87319162 87319241 -96969421 + L2 LINE L2 2617 2695 -619 498 138 0 0 chr4 87319267 87319347 -96969315 + MADE1 DNA Mariner 1 80 0 214 299 0 15 chr4 87319358 87319425 -96969237 + L2 LINE L2 2840 2905 -367 287 238 0 38 chr4 87319438 87319518 -96969144 + MIR SINE MIR 175 251 -11 43551 43 3 6 chr4 87320666 87326818 -96961844 + L1HS LINE L1 3 6131 -24 220 67 0 44 chr4 87326818 87326863 -96961799 + (TAAAA)n Simple_repeat Simple_repeat 1 43 0 223 71 48 0 chr4 87326900 87326942 -96961720 + (TA)n Simple_repeat Simple_repeat 1 44 0 2154 123 0 0 chr4 87327624 87327924 -96960738 - AluSx SINE Alu -12 300 1 22 0 0 0 chr4 87328442 87328464 -96960198 + AT_rich Low_complexity Low_complexity 1 22 0 254 206 62 21 chr4 87328806 87328903 -96959759 + (TCTA)n Simple_repeat Simple_repeat 1 101 0 213 170 0 38 chr4 87329236 87329289 -96959373 + T-rich Low_complexity Low_complexity 2 52 0 180 0 0 0 chr4 87329754 87329774 -96958888 + (TG)n Simple_repeat Simple_repeat 1 20 0 237 178 55 0 chr4 87329795 87329868 -96958794 + (TA)n Simple_repeat Simple_repeat 1 77 0 26 0 0 0 chr4 87329892 87329918 -96958744 + AT_rich Low_complexity Low_complexity 1 26 0 864 279 90 45 chr4 87331928 87332304 -96956358 - L2 LINE L2 0 3313 2921 397 331 16 0 chr4 87332699 87332820 -96955842 - L1MEc LINE L1 -6106 290 168 31 0 0 0 chr4 87332864 87332895 -96955767 + AT_rich Low_complexity Low_complexity 1 31 0 2471 281 69 25 chr4 87333594 87334113 -96954549 + L1MEc LINE L1 71 566 -5830 1519 221 11 22 chr4 87334113 87334480 -96954182 - MLT1A1 LTR MaLR -2 363 1 2471 281 69 25 chr4 87334480 87334980 -96953682 + L1MEc LINE L1 566 1135 -5261 1873 191 43 60 chr4 87337289 87337803 -96950859 - MLT1D LTR MaLR 0 505 1 1467 251 3 22 chr4 87338465 87338836 -96949826 + MLT1A1 LTR MaLR 1 364 -1 1227 217 44 31 chr4 87339191 87339551 -96949111 - MLT1A1 LTR MaLR 0 365 1 22 35 0 0 chr4 87340149 87340178 -96948484 + AT_rich Low_complexity Low_complexity 1 29 0 1581 181 10 16 chr4 87340559 87340863 -96947799 + AluJo SINE Alu 1 302 -10 4002 162 42 36 chr4 87341201 87342066 -96946596 - L1 LINE L1 -1017 5129 4260 226 296 12 12 chr4 87342474 87342555 -96946107 + (TATG)n Simple_repeat Simple_repeat 4 84 0 748 290 67 24 chr4 87343437 87343692 -96944970 - MLT1J2 LTR MaLR -157 293 28 189 107 0 0 chr4 87343728 87343756 -96944906 + (ATG)n Simple_repeat Simple_repeat 2 29 0 656 260 52 106 chr4 87343756 87344218 -96944444 + LTR68 LTR ERV1 1 437 -303 723 262 42 42 chr4 87344397 87344634 -96944028 - MIR SINE MIR 0 262 26 186 298 53 11 chr4 87344888 87344982 -96943680 + L2 LINE L2 3214 3311 -2 41113 67 2 1 chr4 87345549 87351688 -96936974 + L1PA5 LINE L1 3 6152 -2 27 29 0 0 chr4 87351870 87351904 -96936758 + AT_rich Low_complexity Low_complexity 1 34 0 230 316 68 8 chr4 87352779 87352896 -96935766 - L3 LINE CR1 -976 601 478 25 0 0 0 chr4 87353579 87353604 -96935058 + AT_rich Low_complexity Low_complexity 1 25 0 276 143 0 20 chr4 87353724 87353773 -96934889 - Alu SINE Alu -255 48 1 394 284 52 8 chr4 87353774 87353908 -96934754 + MER117 DNA MER1_type 9 148 -49 1862 83 0 4 chr4 87354932 87355174 -96933488 + AluY SINE Alu 71 311 0 233 269 0 0 chr4 87356579 87356631 -96932031 + tRNA-Arg-AGG tRNA tRNA 18 69 -7 560 289 79 13 chr4 87356690 87356918 -96931744 + MIR SINE MIR 20 262 0 22 103 0 0 chr4 87357490 87357568 -96931094 + AT_rich Low_complexity Low_complexity 1 78 0 288 281 0 0 chr4 87357901 87357983 -96930679 - L1MC4 LINE L1 -1347 6695 6614 243 0 0 0 chr4 87357987 87358014 -96930648 + (CA)n Simple_repeat Simple_repeat 2 28 0 192 40 0 0 chr4 87358346 87358371 -96930291 + (TG)n Simple_repeat Simple_repeat 2 26 0 4699 152 34 5 chr4 87358784 87359609 -96929053 - L1MA4 LINE L1 -95 6205 5357 4098 169 7 31 chr4 87359607 87360463 -96928199 + L1MA4 LINE L1 4529 5363 -783 * 21 0 0 0 chr4 87360846 87360867 -96927795 + AT_rich Low_complexity Low_complexity 1 21 0 251 326 94 36 chr4 87361054 87361192 -96927470 - MIR3 SINE MIR -40 168 23 21 82 0 0 chr4 87361988 87362037 -96926625 + AT_rich Low_complexity Low_complexity 1 49 0 233 304 89 0 chr4 87362463 87362575 -96926087 + L1MC/D LINE L1 5141 5262 -884 326 271 100 61 chr4 87362584 87362864 -96925798 + L1MC/D LINE L1 5304 5594 -765 216 143 0 0 chr4 87362866 87362908 -96925754 + (T)n Simple_repeat Simple_repeat 1 42 0 6395 24 0 0 chr4 87362922 87363666 -96924996 - L1PA2 LINE L1 -6 6149 5406 450 108 0 0 chr4 87364209 87364283 -96924379 + (TCCCC)n Simple_repeat Simple_repeat 5 78 0 1878 185 10 47 chr4 87364448 87364853 -96923809 - MLT1B LTR MaLR 0 390 1 7263 41 4 13 chr4 87365038 87365384 -96923278 + L1PA5 LINE L1 5142 5490 -664 2789 22 0 0 chr4 87365384 87365696 -96922966 + AluYb8 SINE Alu 1 312 -6 7263 41 4 13 chr4 87365696 87366368 -96922294 + L1PA5 LINE L1 5490 6152 -2 2233 119 0 0 chr4 87366696 87366999 -96921663 - AluSx SINE Alu -9 303 1 208 143 0 0 chr4 87367319 87367354 -96921308 + (A)n Simple_repeat Simple_repeat 1 35 0 22 0 0 0 chr4 87367785 87367807 -96920855 + AT_rich Low_complexity Low_complexity 1 22 0 816 244 6 0 chr4 87367956 87368116 -96920546 + MER5A DNA MER1_type 1 161 -28 27 73 0 0 chr4 87369410 87369465 -96919197 + AT_rich Low_complexity Low_complexity 1 55 0 1034 159 41 10 chr4 87369896 87370091 -96918571 - MER2 DNA MER2_type -136 209 9 33 66 0 0 chr4 87371200 87371261 -96917401 + AT_rich Low_complexity Low_complexity 1 61 0 1021 295 46 62 chr4 87371632 87371701 -96916961 - L2 LINE L2 0 3313 3244 2162 141 120 5 chr4 87371701 87372083 -96916579 + MSTA LTR MaLR 1 426 -2 1021 295 46 62 chr4 87372083 87372619 -96916043 - L2 LINE L2 -69 3244 2736 1912 115 61 0 chr4 87372786 87373064 -96915598 + AluSx SINE Alu 1 295 -17 6257 130 16 21 chr4 87373098 87374137 -96914525 + L1MA3 LINE L1 5236 6269 -36 495 0 0 0 chr4 87374137 87374192 -96914470 + (TA)n Simple_repeat Simple_repeat 2 56 0 6257 130 16 21 chr4 87374192 87374229 -96914433 + L1MA3 LINE L1 6269 6305 0 219 372 176 5 chr4 87374513 87374701 -96913961 + MIR SINE MIR 39 258 -4 25 0 0 0 chr4 87376978 87377003 -96911659 + AT_rich Low_complexity Low_complexity 1 25 0 927 225 209 0 chr4 87377219 87377521 -96911141 + MLT1A1 LTR MaLR 1 365 0 202 146 24 0 chr4 87378134 87378175 -96910487 + T-rich Low_complexity Low_complexity 3 44 0 189 179 54 36 chr4 87378272 87378328 -96910334 + MIR3 SINE MIR 106 162 -46 24 32 0 0 chr4 87379068 87379099 -96909563 + AT_rich Low_complexity Low_complexity 1 31 0 316 241 38 75 chr4 87379826 87379959 -96908703 - L1MC4 LINE L1 -1344 6698 6571 747 288 37 14 chr4 87380120 87380335 -96908327 + MIR SINE MIR 1 220 -42 186 288 91 0 chr4 87381535 87381601 -96907061 + MIR SINE MIR 85 156 -106 24 85 0 0 chr4 87381634 87381693 -96906969 + AT_rich Low_complexity Low_complexity 1 59 0 267 343 36 12 chr4 87382037 87382203 -96906459 - L1MC4 LINE L1 -2067 5741 5572 21 0 0 0 chr4 87382206 87382227 -96906435 + AT_rich Low_complexity Low_complexity 1 21 0 5786 177 17 5 chr4 87382365 87383492 -96905170 - L1MC1 LINE L1 -2 6331 5187 249 268 41 16 chr4 87383519 87383642 -96905020 - L1MDa LINE L1 -3332 3208 3083 419 319 37 56 chr4 87383674 87383829 -96904833 + MIR SINE MIR 23 174 -88 525 78 0 0 chr4 87383829 87383906 -96904756 - L1PB1 LINE L1 -5 6146 6070 419 319 37 56 chr4 87383906 87383966 -96904696 + MIR SINE MIR 174 234 -28 23 33 0 0 chr4 87384162 87384192 -96904470 + AT_rich Low_complexity Low_complexity 1 30 0 234 193 111 26 chr4 87384379 87384512 -96904150 - L1MDa LINE L1 -3932 2608 2467 2346 214 66 2 chr4 87384892 87385407 -96903255 - MER67C LTR ERV1 -162 548 1 275 284 59 0 chr4 87385546 87385648 -96903014 - MIR SINE MIR -46 216 109 294 275 62 0 chr4 87385828 87385908 -96902754 + L2 LINE L2 3227 3311 -2 22 35 0 0 chr4 87386014 87386043 -96902619 + AT_rich Low_complexity Low_complexity 1 29 0 2436 65 0 0 chr4 87386117 87386424 -96902238 + AluY SINE Alu 1 307 -4 6157 89 31 20 chr4 87388002 87389656 -96899006 - L1PA10 LINE L1 -13 6155 4490 3027 206 78 4 chr4 87389711 87390478 -96898184 - L1MB7 LINE L1 -3 6181 5358 207 0 0 0 chr4 87390478 87390501 -96898161 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 713 89 0 0 chr4 87390501 87390602 -96898060 - AluY SINE Alu -28 283 183 699 258 81 24 chr4 87390606 87390939 -96897723 - L1MB7 LINE L1 -784 5362 5011 * 4328 256 56 45 chr4 87390907 87392774 -96895888 - L1MB7 LINE L1 -1769 4377 2489 274 169 15 31 chr4 87392818 87392883 -96895779 - MLT2B1 LTR ERVL -2 518 455 4792 187 39 17 chr4 87392896 87394540 -96894122 - L1PA16 LINE L1 -1 6165 4492 3144 131 46 2 chr4 87394565 87395039 -96893623 + MER1A DNA MER1_type 35 529 0 1814 193 42 34 chr4 87395166 87395726 -96892936 + MLT2A2 LTR ERVL 1 554 0 7264 244 18 6 chr4 87395726 87397679 -96890983 - L1MEc LINE L1 -1698 4684 2709 1261 262 38 51 chr4 87397682 87398152 -96890510 - MLT2B1 LTR ERVL -56 464 1 328 264 0 0 chr4 87398165 87398252 -96890410 - L1MEc LINE L1 -3992 2571 2485 6524 198 19 7 chr4 87398253 87400527 -96888135 - L1PA15 LINE L1 0 7603 5312 4903 280 48 37 chr4 87400529 87400802 -96887860 - L1PA15 LINE L1 -4855 2726 2457 360 0 0 0 chr4 87400802 87400842 -96887820 + (TG)n Simple_repeat Simple_repeat 2 41 0 4903 280 48 37 chr4 87400842 87402994 -96885668 - L1PA15 LINE L1 -5124 2457 1 773 270 51 82 chr4 87403001 87403876 -96884786 - L1MEc LINE L1 -3938 2446 1599 17248 63 5 1 chr4 87403949 87406988 -96881674 - L1PA6 LINE L1 -6 6148 3094 3479 137 38 42 chr4 87408855 87409626 -96879036 + MER4E LTR ERV1 1 766 0 1899 105 51 4 chr4 87409673 87409949 -96878713 - AluSq SINE Alu -24 289 1 252 429 72 14 chr4 87410256 87410603 -96878059 - L2 LINE L2 -395 2919 2553 1879 144 7 20 chr4 87410971 87411277 -96877385 - AluSx SINE Alu -10 302 1 21 57 0 0 chr4 87413326 87413361 -96875301 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr4 87413567 87413591 -96875071 + AT_rich Low_complexity Low_complexity 1 24 0 2250 103 3 13 chr4 87413731 87414042 -96874620 - AluSp SINE Alu -4 309 2 1265 263 33 0 chr4 87414630 87414931 -96873731 - MLT1A1 LTR MaLR 0 365 55 729 199 8 0 chr4 87414938 87415069 -96873593 - FLAM_C SINE Alu -11 132 1 1545 161 91 11 chr4 87415668 87415942 -96872720 + AluJb SINE Alu 3 298 -14 189 351 81 0 chr4 87416061 87416135 -96872527 - L2 LINE L2 0 3272 3193 220 317 0 61 chr4 87416412 87416494 -96872168 - L3 LINE CR1 -6 1571 1495 309 331 26 7 chr4 87417490 87417641 -96871021 + MIR SINE MIR 56 209 -53 243 114 23 0 chr4 87418282 87418326 -96870336 + HAL1 LINE L1 2137 2181 -326 338 318 45 40 chr4 87418687 87418863 -96869799 + HAL1 LINE L1 2300 2476 -31 887 301 80 26 chr4 87419474 87419900 -96868762 + LTR33 LTR ERVL 4 452 -69 573 322 96 0 chr4 87420134 87420373 -96868289 - MIR SINE MIR 0 262 1 21 0 0 0 chr4 87420408 87420429 -96868233 + AT_rich Low_complexity Low_complexity 1 21 0 268 82 20 20 chr4 87421719 87421768 -96866894 + (TA)n Simple_repeat Simple_repeat 1 49 0 279 300 153 45 chr4 87421937 87422224 -96866438 - L3b LINE CR1 -164 1419 1102 189 152 30 0 chr4 87422578 87422611 -96866051 + L2 LINE L2 3272 3305 -8 1241 232 24 10 chr4 87423142 87423435 -96865227 - L1MC1 LINE L1 -23 6590 6294 2787 235 41 8 chr4 87423444 87424275 -96864387 - L1MC1 LINE L1 -815 5611 4754 7115 50 6 6 chr4 87424299 87425583 -96863079 - L1PA5 LINE L1 -15 6139 4856 20732 92 7 11 chr4 87425583 87428519 -96860143 - L1P LINE L1 -3220 2926 1 8288 231 89 48 chr4 87428564 87430831 -96857831 - L1MC1 LINE L1 -1713 4713 2540 2138 112 0 22 chr4 87430831 87431145 -96857517 - AluSx SINE Alu -5 307 1 8288 231 89 48 chr4 87431145 87432611 -96856051 - L1MC1 LINE L1 -3886 2540 764 1875 144 7 0 chr4 87432611 87432902 -96855760 + AluJb SINE Alu 1 293 -19 8288 231 89 48 chr4 87432902 87433642 -96855020 - L1MC1 LINE L1 -5662 764 56 408 20 0 0 chr4 87434709 87434758 -96853904 + (CA)n Simple_repeat Simple_repeat 2 50 0 22 56 0 0 chr4 87435124 87435160 -96853502 + AT_rich Low_complexity Low_complexity 1 36 0 352 331 126 19 chr4 87435360 87435629 -96853033 - L2 LINE L2 -5 3308 3011 6052 211 42 41 chr4 87435751 87437461 -96851201 - L1 LINE L1 -1812 4334 2624 3268 201 36 14 chr4 87437458 87438225 -96850437 + L1 LINE L1 4340 5123 -1023 * 183 250 250 11 chr4 87438897 87438989 -96849673 - MIR SINE MIR -52 210 97 875 45 18 0 chr4 87439490 87439602 -96849060 + L1PA4 LINE L1 6040 6153 -2 378 369 85 41 chr4 87440452 87440815 -96847847 - L2 LINE L2 -4 3268 2890 246 256 160 67 chr4 87440896 87441314 -96847348 - Charlie7 DNA MER1_type -1 2611 2155 648 252 69 57 chr4 87441487 87441582 -96847080 - Charlie7 DNA MER1_type -1886 726 634 2681 85 6 0 chr4 87441582 87441935 -96846727 - THE1A LTR MaLR 0 355 1 648 252 69 57 chr4 87441935 87442085 -96846577 - Charlie7 DNA MER1_type -1978 634 478 246 264 123 19 chr4 87442065 87442171 -96846491 + Charlie7 DNA MER1_type 252 368 -2244 * 32 43 0 0 chr4 87442289 87442335 -96846327 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr4 87442741 87442763 -96845899 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 87442811 87442839 -96845823 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr4 87443580 87443609 -96845053 + AT_rich Low_complexity Low_complexity 1 29 0 210 274 43 111 chr4 87443612 87443729 -96844933 + L2 LINE L2 3200 3308 -5 667 351 118 17 chr4 87444114 87444761 -96843901 + L2 LINE L2 2584 3298 -15 4177 182 24 30 chr4 87446056 87446930 -96841732 + L1 LINE L1 3450 4318 -1828 17359 181 29 20 chr4 87446940 87448083 -96840579 - L1PA14 LINE L1 -2 7597 6465 486 0 0 0 chr4 87448083 87448137 -96840525 + (TG)n Simple_repeat Simple_repeat 1 54 0 17359 181 29 20 chr4 87448137 87452482 -96836180 - L1PA14 LINE L1 -1134 6465 2159 1754 155 61 22 chr4 87452482 87452843 -96835819 - THE1C LTR MaLR 0 375 1 9588 117 37 42 chr4 87452843 87454430 -96834232 - THE1C-int LTR MaLR 0 1580 1 1830 136 69 36 chr4 87454432 87454793 -96833869 - THE1C LTR MaLR -2 373 1 17359 181 29 20 chr4 87454793 87455736 -96832926 - L1PA14 LINE L1 -5440 2159 1226 850 148 0 47 chr4 87455736 87455885 -96832777 + FLAM_C SINE Alu 1 142 -1 17359 181 29 20 chr4 87455885 87456895 -96831767 - L1PA14 LINE L1 -6373 1226 1 4185 195 23 34 chr4 87456907 87457267 -96831395 + L1 LINE L1 4330 4692 -1454 4112 127 23 19 chr4 87457267 87457957 -96830705 + L1PA16 LINE L1 5463 6157 -9 4185 195 23 34 chr4 87457957 87458634 -96830028 + L1 LINE L1 4692 5356 -790 522 211 102 0 chr4 87458622 87458769 -96829893 + L1MA9 LINE L1 4559 4720 -1426 * 4515 168 38 27 chr4 87458766 87459195 -96829467 + L1MA9 LINE L1 5350 5773 -539 229 68 45 0 chr4 87459195 87459239 -96829423 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 4515 168 38 27 chr4 87459239 87459596 -96829066 + L1MA9 LINE L1 5773 6150 -162 1418 153 159 37 chr4 87459596 87459917 -96828745 - MER46B DNA MER2_type 0 236 2 4515 168 38 27 chr4 87459917 87460081 -96828581 + L1MA9 LINE L1 6150 6311 -1 938 233 18 22 chr4 87461063 87461286 -96827376 + LTR40a LTR ERVL 246 467 -52 226 286 0 0 chr4 87461318 87461374 -96827288 + LTR40b LTR ERVL 407 462 0 206 338 83 21 chr4 87461465 87461610 -96827052 + MER5A DNA MER1_type 35 188 -1 21 0 0 0 chr4 87461653 87461674 -96826988 + AT_rich Low_complexity Low_complexity 1 21 0 254 73 24 0 chr4 87462161 87462202 -96826460 + (TTA)n Simple_repeat Simple_repeat 1 42 0 676 226 60 0 chr4 87462283 87462451 -96826211 - L1PA16 LINE L1 -2 6164 5987 277 274 0 0 chr4 87463387 87463449 -96825213 - MIR SINE MIR -21 241 180 471 324 7 7 chr4 87463939 87464084 -96824578 - MIR SINE MIR -115 147 3 656 228 190 0 chr4 87464794 87464978 -96823684 - MER20 DNA MER1_type 0 219 1 212 125 21 0 chr4 87465682 87465690 -96822972 + (TCTA)n Simple_repeat Simple_repeat 3 9 -42 543 64 26 0 chr4 87465690 87465768 -96822894 + MADE1 DNA Mariner 1 80 0 212 125 21 0 chr4 87465768 87465807 -96822855 + (TCTA)n Simple_repeat Simple_repeat 9 51 0 27 29 0 0 chr4 87467096 87467130 -96821532 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr4 87467739 87467769 -96820893 + AT_rich Low_complexity Low_complexity 1 30 0 766 323 159 46 chr4 87468414 87469781 -96818881 - L2 LINE L2 -1 3312 1769 298 317 67 0 chr4 87470867 87470971 -96817691 + MIR3 SINE MIR 66 176 -32 32 26 0 0 chr4 87470982 87471021 -96817641 + AT_rich Low_complexity Low_complexity 1 39 0 180 158 0 0 chr4 87472949 87472987 -96815675 + (CA)n Simple_repeat Simple_repeat 1 38 0 180 261 22 0 chr4 87473828 87473874 -96814788 + MIR SINE MIR 191 237 -25 837 134 17 81 chr4 87474053 87474225 -96814437 + MER20 DNA MER1_type 1 161 -58 22 70 0 0 chr4 87474282 87474325 -96814337 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr4 87474453 87474482 -96814180 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr4 87474663 87474698 -96813964 + AT_rich Low_complexity Low_complexity 1 35 0 465 250 18 0 chr4 87475060 87475172 -96813490 - L2 LINE L2 -13 3300 3187 1465 129 96 13 chr4 87475177 87475469 -96813193 - THE1C LTR MaLR 0 375 1 562 290 130 7 chr4 87476196 87476496 -96812166 + HsTC2c DNA Tc2 17 353 -376 1079 61 0 0 chr4 87476537 87476668 -96811994 - AluSc SINE Alu -178 131 1 605 287 151 44 chr4 87476669 87476986 -96811676 + HsTC2c DNA Tc2 379 729 0 239 133 0 0 chr4 87477349 87477394 -96811268 - LTR66 LTR ERVL -171 439 395 307 173 0 0 chr4 87477403 87477455 -96811207 - L1MC4 LINE L1 -1339 6703 6652 * 310 307 23 0 chr4 87477415 87477503 -96811159 + L1MC4 LINE L1 6614 6703 -1339 * 355 289 0 0 chr4 87477457 87477547 -96811115 - L1MC4 LINE L1 -1339 6703 6614 271 324 124 9 chr4 87477804 87477909 -96810753 - MIR3 SINE MIR -80 128 12 260 299 37 28 chr4 87478004 87478111 -96810551 + LTR16A LTR ERVL 27 134 -316 354 248 119 17 chr4 87478252 87478426 -96810236 + LTR16A LTR ERVL 266 450 0 341 301 44 64 chr4 87478608 87478811 -96809851 - MIR SINE MIR -28 234 36 207 0 0 0 chr4 87479000 87479023 -96809639 + (A)n Simple_repeat Simple_repeat 1 23 0 1637 183 35 3 chr4 87479714 87480058 -96808604 - L1 LINE L1 -1666 5542 5188 2949 282 86 47 chr4 87480068 87481992 -96806670 - L1 LINE L1 -4434 2775 95 278 287 48 66 chr4 87482268 87482435 -96806227 - MIR SINE MIR -28 234 71 207 0 0 0 chr4 87482661 87482684 -96805978 + (A)n Simple_repeat Simple_repeat 1 23 0 333 271 135 0 chr4 87483908 87484041 -96804621 + MIR SINE MIR 111 261 -1 273 218 0 18 chr4 87484048 87484103 -96804559 - L2 LINE L2 -5 3308 3255 233 316 175 5 chr4 87484093 87484299 -96804363 - L2 LINE L2 -726 2588 2348 * 26 30 0 0 chr4 87486184 87486217 -96802445 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr4 87487053 87487074 -96801588 + AT_rich Low_complexity Low_complexity 1 21 0 2299 76 6 3 chr4 87487682 87487998 -96800664 + HERVH LTR ERV1 223 539 -7174 16524 96 19 43 chr4 87487998 87490878 -96797784 + HERVH LTR ERV1 246 2995 -4718 887 141 13 0 chr4 87490857 87491006 -96797656 + HERVH LTR ERV1 3140 3290 -4423 * 3344 108 8 0 chr4 87491005 87491495 -96797167 + HERVH LTR ERV1 3500 3993 -3720 4287 142 5 1 chr4 87491497 87492157 -96796505 + HERVH LTR ERV1 4488 5149 -2564 984 100 0 7 chr4 87492158 87492308 -96796354 + HERVH LTR ERV1 5600 5748 -1965 460 121 165 0 chr4 87492309 87492400 -96796262 + HERVH LTR ERV1 7384 7489 -224 4293 147 1 1 chr4 87492535 87493197 -96795465 - HERVH LTR ERV1 -2564 5149 4488 3353 110 0 4 chr4 87493198 87493689 -96794973 - HERVH LTR ERV1 -3719 3994 3506 19609 94 55 60 chr4 87493694 87497002 -96791660 - HERVH LTR ERV1 -4423 3290 1 3491 53 0 7 chr4 87497004 87497455 -96791207 - LTR7 LTR ERV1 -2 448 1 3164 169 12 10 chr4 87497455 87498072 -96790590 - L1PB4 LINE L1 -206 5950 5334 1212 56 11 28 chr4 87498172 87498351 -96790311 + HERVH LTR ERV1 7538 7713 0 3372 69 0 9 chr4 87498351 87498803 -96789859 + LTR7 LTR ERV1 1 448 -2 3807 217 40 2 chr4 87499030 87499984 -96788678 + L1M2 LINE L1 1910 2899 -3950 6897 214 26 15 chr4 87500032 87500610 -96788052 + L1M2 LINE L1 3162 3732 -3116 1211 226 13 59 chr4 87500610 87500916 -96787746 + AluJb SINE Alu 1 292 -10 6897 214 26 15 chr4 87500916 87502065 -96786597 + L1M2 LINE L1 3732 4908 -1940 1761 195 43 19 chr4 87502076 87502497 -96786165 + L1M2 LINE L1 5169 5599 -1249 762 316 84 67 chr4 87503420 87503970 -96784692 - L2 LINE L2 -749 2565 2007 387 236 7 64 chr4 87504967 87505107 -96783555 + MER94 DNA DNA 2 133 -1 228 361 69 51 chr4 87505182 87505517 -96783145 - L2 LINE L2 -1732 1582 1242 778 284 27 27 chr4 87505557 87505818 -96782844 - MIR SINE MIR 0 262 2 2323 194 41 27 chr4 87507065 87507946 -96780716 + L1MC3 LINE L1 5487 6341 -3 21 71 0 0 chr4 87508536 87508578 -96780084 + AT_rich Low_complexity Low_complexity 1 42 0 1953 146 0 10 chr4 87509094 87509395 -96779267 + AluSq SINE Alu 1 298 -15 340 287 113 9 chr4 87510193 87510308 -96778354 + MIR SINE MIR 27 153 -109 31 0 0 0 chr4 87510451 87510482 -96778180 + AT_rich Low_complexity Low_complexity 1 31 0 631 211 28 50 chr4 87512034 87512214 -96776448 - MER20 DNA MER1_type -43 176 1 525 103 13 0 chr4 87512954 87513032 -96775630 + MADE1 DNA Mariner 1 79 -1 1044 208 68 84 chr4 87513140 87513520 -96775142 - MLT1A2 LTR MaLR 0 374 1 2217 187 83 0 chr4 87513587 87514080 -96774582 + L1MB7 LINE L1 5636 6169 -15 193 340 56 49 chr4 87514610 87514754 -96773908 + L2 LINE L2 2748 2892 -422 233 253 101 0 chr4 87515159 87515238 -96773424 + MIR SINE MIR 120 206 -56 211 257 86 76 chr4 87516006 87516111 -96772551 - L2 LINE L2 -1003 2311 2206 257 226 0 0 chr4 87516611 87516664 -96771998 + (TCCA)n Simple_repeat Simple_repeat 2 54 0 2297 304 54 51 chr4 87516664 87518109 -96770553 - L2 LINE L2 0 3313 1875 2588 153 17 11 chr4 87518507 87518976 -96769686 - L1MA5A LINE L1 -10 6287 5816 198 0 0 0 chr4 87519258 87519280 -96769382 + (TTTAG)n Simple_repeat Simple_repeat 3 24 0 28 0 0 0 chr4 87520055 87520083 -96768579 + AT_rich Low_complexity Low_complexity 1 28 0 261 311 56 22 chr4 87520245 87520335 -96768327 + MLT1J LTR MaLR 103 195 -316 850 206 23 73 chr4 87520513 87520732 -96767930 - MER58A DNA MER1_type -6 218 11 25 31 0 0 chr4 87520777 87520809 -96767853 + AT_rich Low_complexity Low_complexity 1 32 0 693 279 50 14 chr4 87520958 87521255 -96767407 - L1M4 LINE L1 -1572 4574 4267 238 156 31 0 chr4 87521260 87521324 -96767338 + (TA)n Simple_repeat Simple_repeat 1 66 0 652 125 0 0 chr4 87521334 87521430 -96767232 - L1M2 LINE L1 -511 5789 5694 3793 205 33 20 chr4 87521536 87522030 -96766632 - L1M2 LINE L1 -889 5257 4744 2074 206 30 68 chr4 87522030 87522602 -96766060 + MLT2B3 LTR ERVL 1 550 -4 3793 205 33 20 chr4 87522602 87523047 -96765615 - L1M2 LINE L1 -1402 4744 4306 973 232 0 0 chr4 87523047 87523258 -96765404 - L1PB4 LINE L1 0 6156 5946 3412 53 0 9 chr4 87523260 87523712 -96764950 - LTR7 LTR ERV1 -2 448 1 21 36 0 0 chr4 87525349 87525377 -96763285 + AT_rich Low_complexity Low_complexity 1 28 0 1339 202 116 18 chr4 87526679 87527016 -96761646 - MLT1A2 LTR MaLR -4 370 1 215 219 207 12 chr4 87527059 87527141 -96761521 - MIR SINE MIR -85 177 80 23 33 0 0 chr4 87527788 87527818 -96760844 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr4 87529021 87529045 -96759617 + AT_rich Low_complexity Low_complexity 1 24 0 1171 186 0 0 chr4 87530208 87530423 -96758239 + AluJb SINE Alu 88 302 -10 352 241 128 28 chr4 87531267 87531408 -96757254 + MIR SINE MIR 34 188 -74 180 365 0 24 chr4 87532497 87532582 -96756080 - L2 LINE L2 0 3272 3190 183 156 0 0 chr4 87532606 87532638 -96756024 + (TA)n Simple_repeat Simple_repeat 1 32 0 441 266 83 52 chr4 87532697 87532889 -96755773 - MIR SINE MIR 0 262 65 281 358 25 30 chr4 87533066 87533267 -96755395 + MIR SINE MIR 7 206 -56 219 139 0 0 chr4 87533775 87533811 -96754851 + (TC)n Simple_repeat Simple_repeat 1 36 0 2199 103 0 23 chr4 87533811 87534113 -96754549 - AluSg SINE Alu -15 295 1 229 265 115 32 chr4 87534113 87534366 -96754296 + L1 LINE L1 3695 3968 -2178 3385 222 67 168 chr4 87534412 87535845 -96752817 + L1MCa LINE L1 3 1196 -4849 1685 221 75 85 chr4 87536871 87537988 -96750674 + L1 LINE L1 1545 2701 -4467 992 146 8 13 chr4 87537992 87538167 -96750495 + MSTB1 LTR MaLR 257 432 0 274 188 0 0 chr4 87538167 87538215 -96750447 + L1 LINE L1 5438 5485 -1682 283 164 16 0 chr4 87538258 87538319 -96750343 - L1 LINE L1 -2819 3327 3266 322 258 0 41 chr4 87538340 87538437 -96750225 - MSTC LTR MaLR -333 95 3 337 119 0 34 chr4 87538439 87538498 -96750164 + L1MA8 LINE L1 5924 5980 -311 282 186 68 0 chr4 87538500 87538559 -96750103 + L1MCa LINE L1 1472 1534 -5030 1351 230 14 30 chr4 87538660 87539025 -96749637 - Charlie6 DNA MER1_type -2173 1327 969 8770 176 40 28 chr4 87539030 87541845 -96746817 + L1MA4 LINE L1 3455 6297 -3 1843 333 39 63 chr4 87541845 87542115 -96746547 - Charlie6 DNA MER1_type -2533 967 692 568 179 16 0 chr4 87542115 87542238 -96746424 - L1MB7 LINE L1 0 6184 6060 1843 333 39 63 chr4 87542238 87542948 -96745714 - Charlie6 DNA MER1_type -2808 692 11 216 294 24 87 chr4 87543387 87543513 -96745149 - L2 LINE L2 -14 3299 3182 471 308 118 43 chr4 87543807 87544129 -96744533 - MLT1J2 LTR MaLR -9 437 92 1611 175 164 44 chr4 87544133 87544590 -96744072 + MLT2B2 LTR ERVL 4 515 0 2153 129 3 0 chr4 87544980 87545283 -96743379 - AluSq SINE Alu -8 305 2 1823 264 73 19 chr4 87545999 87546629 -96742033 + L1M2 LINE L1 1224 1887 -4962 3361 62 2 7 chr4 87546630 87547080 -96741582 + LTR7 LTR ERV1 1 448 -2 1214 74 6 0 chr4 87547082 87547245 -96741417 + HERVH LTR ERV1 1 164 -7549 733 183 167 57 chr4 87597246 87597492 -96691170 + MLT1A1 LTR MaLR 87 359 -6 1653 193 56 24 chr4 87597670 87598048 -96690614 - MLT1B LTR MaLR 0 390 1 243 292 10 10 chr4 87598293 87598389 -96690273 - LTR33A LTR ERVL -6 517 422 254 231 110 66 chr4 87598689 87598780 -96689882 - LTR33A LTR ERVL -363 160 66 24 32 0 0 chr4 87599095 87599126 -96689536 + AT_rich Low_complexity Low_complexity 1 31 0 346 329 14 68 chr4 87601685 87601907 -96686755 + L1MEd LINE L1 1040 1249 -4870 2013 180 70 16 chr4 87602194 87602621 -96686041 + MLT1C LTR MaLR 1 450 -17 2475 144 31 7 chr4 87602971 87603388 -96685274 - MSTA LTR MaLR -1 427 1 191 59 0 29 chr4 87603695 87603729 -96684933 + (TA)n Simple_repeat Simple_repeat 2 34 0 1841 156 64 12 chr4 87605749 87606095 -96682567 + THE1B LTR MaLR 1 364 0 3210 175 137 133 chr4 87606097 87606382 -96682280 + THE1B-int LTR MaLR 3 285 -1366 588 39 0 0 chr4 87606382 87606459 -96682203 - L1PA5 LINE L1 0 6154 6078 3210 175 137 133 chr4 87606459 87607250 -96681412 + THE1B-int LTR MaLR 285 1083 -568 849 135 30 0 chr4 87607250 87607383 -96681279 + THE1B LTR MaLR 228 364 0 186 267 0 0 chr4 87607655 87607745 -96680917 + (TA)n Simple_repeat Simple_repeat 2 91 0 322 243 14 0 chr4 87607779 87607919 -96680743 + (TA)n Simple_repeat Simple_repeat 2 143 0 2728 184 21 58 chr4 87607964 87608027 -96680635 - MER6A DNA MER2_type -260 605 541 1353 209 3 66 chr4 87608027 87608347 -96680315 + AluJo SINE Alu 1 300 -2 2728 184 21 58 chr4 87608347 87608909 -96679753 - MER6A DNA MER2_type -324 541 3 1155 232 58 32 chr4 87608917 87609297 -96679365 - L1MA10 LINE L1 -13 6321 5932 1753 193 78 5 chr4 87609299 87609699 -96678963 - L1MA10 LINE L1 -582 5730 5302 1685 232 26 5 chr4 87609690 87610117 -96678545 - L1MA10 LINE L1 -1799 4347 3912 * 2055 169 16 32 chr4 87610121 87610493 -96678169 - MER83C LTR ERV1 -7 366 1 2040 181 0 6 chr4 87610501 87610838 -96677824 - MER83C-int LTR ERV1 -19 4861 4527 554 323 38 25 chr4 87610825 87611425 -96677237 - MER83C-int LTR ERV1 -255 8371 6257 * 2714 318 27 40 chr4 87612223 87612812 -96675850 - MER83C-int LTR ERV1 -1051 3903 3307 2188 141 9 3 chr4 87612812 87613160 -96675502 - THE1A LTR MaLR -2 353 4 10812 114 15 5 chr4 87613163 87614179 -96674483 - THE1A-int LTR MaLR 0 1580 541 2307 106 3 0 chr4 87614179 87614482 -96674180 - AluY SINE Alu -7 304 1 10812 114 15 5 chr4 87614482 87615028 -96673634 - THE1A-int LTR MaLR -1039 541 2 2164 140 8 11 chr4 87615029 87615385 -96673277 - THE1A LTR MaLR 0 355 1 2714 318 27 40 chr4 87615385 87616397 -96672265 - MER83C-int LTR ERV1 -1648 3306 2318 308 304 0 0 chr4 87616539 87616631 -96672031 - MER83C-int LTR ERV1 -2775 2179 2088 654 303 45 61 chr4 87616859 87617700 -96670962 - MER83C-int LTR ERV1 -3505 1449 1067 3347 238 50 22 chr4 87617862 87618810 -96669852 - MER83C-int LTR ERV1 -3872 1008 209 461 281 46 26 chr4 87619085 87619238 -96669424 - MER83C-int LTR ERV1 -4681 199 44 1933 157 32 40 chr4 87619251 87619627 -96669035 - MER83C LTR ERV1 0 373 1 1851 235 23 6 chr4 87619628 87620105 -96668557 - L1MA10 LINE L1 -2228 3918 3434 233 341 35 0 chr4 87620214 87620299 -96668363 + MIR3 SINE MIR 114 201 -7 24 67 0 0 chr4 87621442 87621487 -96667175 + AT_rich Low_complexity Low_complexity 1 45 0 974 298 88 13 chr4 87622284 87622670 -96665992 + L1ME1 LINE L1 37 451 -5945 864 295 125 23 chr4 87622691 87623436 -96665226 + L1ME1 LINE L1 3114 3934 -2281 1635 331 55 50 chr4 87623461 87624161 -96664501 + L1ME1 LINE L1 4202 4910 -1305 798 89 0 0 chr4 87624161 87624273 -96664389 + (TA)n Simple_repeat Simple_repeat 2 113 0 1635 331 55 50 chr4 87624273 87624663 -96663999 + L1ME1 LINE L1 4910 5297 -918 2073 249 89 29 chr4 87624731 87625447 -96663215 + L1ME1 LINE L1 5394 6163 -72 188 35 35 0 chr4 87625447 87625476 -96663186 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 2073 249 89 29 chr4 87625476 87625549 -96663113 + L1ME1 LINE L1 6163 6230 -5 237 316 51 75 chr4 87626115 87626368 -96662294 - L2 LINE L2 -261 3052 2806 313 321 9 9 chr4 87627071 87627183 -96661479 - MER81 DNA DNA -2 112 1 227 324 14 0 chr4 87627667 87627741 -96660921 - MIR SINE MIR -3 259 185 42392 36 21 2 chr4 87627751 87633774 -96654888 - L1PA2 LINE L1 -2 6153 13 270 228 41 152 chr4 87633811 87633982 -96654680 - MIR SINE MIR -99 163 12 272 264 33 33 chr4 87633995 87634116 -96654546 - L1ME LINE L1 -363 5801 5681 323 307 63 17 chr4 87634168 87634406 -96654256 - L1ME LINE L1 -665 5577 5329 1109 38 0 0 chr4 87634458 87634589 -96654073 - AluY SINE Alu -12 299 169 2398 73 3 0 chr4 87636412 87636727 -96651935 - L1PA7 LINE L1 0 6154 5839 4283 73 3 0 chr4 87636727 87637316 -96651346 - L1PA7 LINE L1 -985 5161 4571 24 85 0 0 chr4 87637481 87637540 -96651122 + AT_rich Low_complexity Low_complexity 1 59 0 1425 173 62 0 chr4 87638389 87638649 -96650013 + AluJb SINE Alu 5 280 -32 362 346 142 47 chr4 87638970 87639572 -96649090 - L2 LINE L2 -93 3179 2507 504 333 116 28 chr4 87639602 87639956 -96648706 - L2 LINE L2 -954 2360 1976 4173 87 128 2 chr4 87640230 87640841 -96647821 + LTR12 LTR ERV1 1 688 0 181 298 184 19 chr4 87640967 87641125 -96647537 + L2 LINE L2 3128 3311 -2 212 312 159 29 chr4 87641176 87641346 -96647316 + L3 LINE CR1 1313 1504 -73 233 98 24 0 chr4 87641652 87641693 -96646969 + (TC)n Simple_repeat Simple_repeat 2 43 0 248 253 25 25 chr4 87642967 87643046 -96645616 + MIR SINE MIR 169 247 -15 27 62 0 0 chr4 87643058 87643106 -96645556 + AT_rich Low_complexity Low_complexity 1 48 0 13910 151 24 6 chr4 87643536 87645883 -96642779 + Tigger1 DNA MER2_type 30 2418 0 535 308 66 50 chr4 87645884 87646498 -96642164 - L2 LINE L2 0 3313 2638 30 27 0 0 chr4 87647512 87647549 -96641113 + AT_rich Low_complexity Low_complexity 1 37 0 1209 145 28 9 chr4 87647604 87647818 -96640844 - L1PA16 LINE L1 0 6166 5949 2003 169 6 6 chr4 87647850 87648206 -96640456 - L1MA5 LINE L1 -450 5850 5495 22 70 0 0 chr4 87649161 87649204 -96639458 + AT_rich Low_complexity Low_complexity 1 43 0 4603 216 35 12 chr4 87649253 87650350 -96638312 - L1MA5 LINE L1 -1132 5014 3893 4207 154 56 65 chr4 87650361 87651432 -96637230 + L1PA16 LINE L1 5061 6119 -47 2715 101 3 3 chr4 87651432 87651807 -96636855 - THE1C LTR MaLR 0 375 1 4207 154 56 65 chr4 87651807 87651855 -96636807 + L1PA16 LINE L1 6119 6166 0 305 61 0 20 chr4 87652300 87652320 -96636342 + (TAA)n Simple_repeat Simple_repeat 2 21 -28 1983 139 0 11 chr4 87652320 87652607 -96636055 + AluSg SINE Alu 1 284 -26 305 61 0 20 chr4 87652607 87652635 -96636027 + (TAA)n Simple_repeat Simple_repeat 21 49 0 369 0 0 0 chr4 87652635 87652676 -96635986 + (GAA)n Simple_repeat Simple_repeat 2 42 0 702 123 33 123 chr4 87653162 87653374 -96635288 + L1MA7 LINE L1 6094 6286 -5 335 266 152 55 chr4 87654033 87654528 -96634134 - L1ME LINE L1 -341 5829 5304 450 340 60 53 chr4 87654539 87654857 -96633805 - L1MEd LINE L1 -5548 571 252 241 228 0 35 chr4 87654980 87655037 -96633625 + A-rich Low_complexity Low_complexity 1 55 0 1610 191 3 29 chr4 87655665 87655974 -96632688 - AluJo SINE Alu -9 303 3 214 280 13 0 chr4 87657110 87657185 -96631477 + (TA)n Simple_repeat Simple_repeat 2 77 0 623 314 83 31 chr4 87657228 87657588 -96631074 + L2 LINE L2 2587 2965 -349 825 217 75 8 chr4 87657696 87657936 -96630726 - L1ME3A LINE L1 0 6170 5915 4247 181 18 33 chr4 87657964 87658989 -96629673 - L1MB1 LINE L1 -2 6402 5392 207 0 0 0 chr4 87658989 87659012 -96629650 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4247 181 18 33 chr4 87659012 87659157 -96629505 - L1M1 LINE L1 -1012 5392 5246 1915 121 21 6 chr4 87659167 87659590 -96629072 + L1M1 LINE L1 5368 5794 -743 * 7886 215 56 12 chr4 87659587 87661633 -96627029 - L1MB1 LINE L1 -1118 5264 3130 242 95 0 0 chr4 87661646 87661688 -96626974 - L1MA2 LINE L1 0 6304 6263 2038 97 125 12 chr4 87661688 87662007 -96626655 - THE1A LTR MaLR 0 355 1 9845 116 67 1 chr4 87662017 87663488 -96625174 - THE1A-int LTR MaLR -11 1569 1 2304 100 3 21 chr4 87663548 87663888 -96624774 - THE1A LTR MaLR -20 335 2 1676 157 31 16 chr4 87663889 87664207 -96624455 - L1MA1 LINE L1 -37 6265 5943 3301 159 19 5 chr4 87664217 87664789 -96623873 + LTR22 LTR ERVK 1 580 0 847 225 0 0 chr4 87664853 87665040 -96623622 - L1MB1 LINE L1 -3246 3136 2950 1759 194 60 33 chr4 87665040 87665581 -96623081 - MLT2A2 LTR ERVL 0 554 1 2547 270 55 33 chr4 87665586 87665646 -96623016 - L1MB1 LINE L1 -3457 2925 2868 405 0 0 0 chr4 87665646 87665691 -96622971 + (TATAG)n Simple_repeat Simple_repeat 3 47 0 2547 270 55 33 chr4 87665691 87667693 -96620969 - L1MB1 LINE L1 -3514 2868 810 243 257 19 76 chr4 87667828 87667933 -96620729 - L1M3de LINE L1 -5193 2293 2195 500 346 31 50 chr4 87668109 87668527 -96620135 - L1M3de LINE L1 -5213 2273 1600 1197 266 54 63 chr4 87668532 87669178 -96619484 - L1ME3 LINE L1 -268 5894 5255 1998 141 0 0 chr4 87669404 87669695 -96618967 + AluSx SINE Alu 1 291 -21 28 48 0 0 chr4 87669703 87669745 -96618917 + AT_rich Low_complexity Low_complexity 1 42 0 32 43 0 0 chr4 87670236 87670282 -96618380 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr4 87671181 87671204 -96617458 + AT_rich Low_complexity Low_complexity 1 23 0 562 363 16 8 chr4 87671583 87671831 -96616831 - MIR SINE MIR -6 256 7 250 137 41 27 chr4 87671981 87672054 -96616608 + (TA)n Simple_repeat Simple_repeat 2 75 0 4080 221 19 24 chr4 87672289 87673197 -96615465 - L1M3de LINE L1 -6656 909 7 601 272 88 37 chr4 87673432 87673862 -96614800 + L1ME1 LINE L1 3919 4370 -1776 1418 192 24 38 chr4 87673927 87674219 -96614443 - AluJb SINE Alu -24 288 1 6804 160 15 8 chr4 87674220 87674812 -96613850 - L1PA15-16 LINE L1 -3857 2992 2405 1723 176 72 16 chr4 87674812 87675131 -96613531 - MER1B DNA MER1_type 0 337 1 6804 160 15 8 chr4 87675131 87675792 -96612870 - L1PA15-16 LINE L1 -4444 2405 1731 1039 286 24 9 chr4 87675798 87676137 -96612525 - L1PA15-16 LINE L1 -5254 1595 1252 267 318 80 77 chr4 87676510 87676784 -96611878 - L1M2 LINE L1 -5782 1067 793 245 296 14 0 chr4 87676854 87676925 -96611737 - L1M2 LINE L1 -6023 826 755 1348 146 26 0 chr4 87676957 87677183 -96611479 + L1PA16 LINE L1 5934 6165 -1 1246 236 208 16 chr4 87677236 87677879 -96610783 + L1ME1 LINE L1 4442 5208 -938 2018 239 110 44 chr4 87677895 87678696 -96609966 + L1ME1 LINE L1 5304 6157 -9 22 56 0 0 chr4 87678764 87678800 -96609862 + AT_rich Low_complexity Low_complexity 1 36 0 198 215 0 138 chr4 87679111 87679176 -96609486 + L2 LINE L2 3254 3309 -4 217 345 9 9 chr4 87679409 87679522 -96609140 - L3b LINE CR1 -151 1432 1320 225 226 19 0 chr4 87680223 87680276 -96608386 + MER69 DNA AcHobo 2334 2387 -139 607 272 0 25 chr4 87680291 87680449 -96608213 + MER110 LTR ERV1 193 346 -145 3871 183 57 30 chr4 87680459 87681403 -96607259 + L1MC2 LINE L1 5366 6335 -9 479 141 121 0 chr4 87681404 87681503 -96607159 - MER97a DNA MER1_type? -306 588 478 363 164 0 14 chr4 87681577 87681650 -96607012 - MER97a DNA MER1_type? -578 316 245 33 80 0 0 chr4 87681670 87681745 -96606917 + AT_rich Low_complexity Low_complexity 1 75 0 434 188 68 74 chr4 87681767 87681943 -96606719 - MER97a DNA MER1_type? -640 254 80 5053 166 10 31 chr4 87682834 87683797 -96604865 + L1PA13 LINE L1 4326 5265 -898 2167 119 0 0 chr4 87683797 87684083 -96604579 - AluSx SINE Alu -24 288 3 5053 166 10 31 chr4 87684083 87684248 -96604414 + L1PA13 LINE L1 5265 5432 -731 1325 128 84 8 chr4 87684248 87684492 -96604170 + L1PA13 LINE L1 5896 6163 0 208 366 30 20 chr4 87684824 87684925 -96603737 - MER5A DNA MER1_type -44 145 44 256 294 0 0 chr4 87685413 87685481 -96603181 + (TA)n Simple_repeat Simple_repeat 2 69 0 273 57 0 0 chr4 87685555 87685590 -96603072 + (TTA)n Simple_repeat Simple_repeat 3 37 0 834 357 53 28 chr4 87688177 87689008 -96599654 + HERV16 LTR ERVL 870 1798 -3433 1232 311 67 28 chr4 87689059 87689669 -96598993 + HERV16 LTR ERVL 1953 2586 -3178 523 370 102 22 chr4 87690563 87691014 -96597648 + LTR16C LTR ERVL 3 489 -2 387 315 47 23 chr4 87691356 87691889 -96596773 - L1ME LINE L1 -456 5714 5166 27 0 0 0 chr4 87691913 87691940 -96596722 + AT_rich Low_complexity Low_complexity 1 27 0 186 43 0 0 chr4 87692283 87692306 -96596356 + (TTA)n Simple_repeat Simple_repeat 1 23 0 339 246 16 24 chr4 87692452 87692578 -96596084 + L1M4 LINE L1 2873 2997 -3149 491 259 46 27 chr4 87692981 87693240 -96595422 - L1ME LINE L1 -2210 3936 3673 1124 267 3 28 chr4 87693494 87693820 -96594842 + L1PA13 LINE L1 1331 1648 -5139 4816 177 32 12 chr4 87693826 87695235 -96593427 + L1PA16 LINE L1 4729 6166 0 477 321 60 0 chr4 87695620 87695804 -96592858 + MIR SINE MIR 64 258 -4 24 0 0 0 chr4 87696988 87697012 -96591650 + AT_rich Low_complexity Low_complexity 1 24 0 1706 147 0 19 chr4 87698493 87698759 -96589903 - AluSx SINE Alu -22 290 30 1855 109 36 4 chr4 87699133 87699431 -96589231 + AluY SINE Alu 1 307 0 21 0 0 0 chr4 87699542 87699563 -96589099 + AT_rich Low_complexity Low_complexity 1 21 0 302 207 24 0 chr4 87699986 87700068 -96588594 + (TATATG)n Simple_repeat Simple_repeat 6 89 0 42635 49 6 0 chr4 87700081 87706192 -96582470 - L1PA4 LINE L1 -11 6144 1 1920 172 0 3 chr4 87706520 87706822 -96581840 - AluSx SINE Alu -11 301 1 759 343 54 20 chr4 87707274 87707682 -96580980 + LTR16B LTR ERVL 34 455 -9 502 204 0 10 chr4 87708154 87708257 -96580405 - L1PA15 LINE L1 -1 6164 6063 379 319 128 20 chr4 87709733 87709937 -96578725 + MLT1H LTR MaLR 321 546 -3 229 384 47 0 chr4 87711584 87711670 -96576992 + L2 LINE L2 3134 3223 -49 1402 180 47 11 chr4 87714164 87714442 -96574220 + AluJo SINE Alu 1 288 -24 28 0 0 0 chr4 87714450 87714478 -96574184 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr4 87715279 87715310 -96573352 + AT_rich Low_complexity Low_complexity 1 31 0 1308 104 5 10 chr4 87715310 87715511 -96573151 - L1PB2 LINE L1 -2 6149 5950 24 32 0 0 chr4 87715727 87715758 -96572904 + AT_rich Low_complexity Low_complexity 1 31 0 352 298 85 0 chr4 87715795 87715936 -96572726 + LTR33 LTR ERVL 5 157 -364 22 80 0 0 chr4 87716152 87716202 -96572460 + AT_rich Low_complexity Low_complexity 1 50 0 2001 144 33 30 chr4 87716358 87716720 -96571942 + THE1B LTR MaLR 1 363 -1 1154 124 0 0 chr4 87716779 87716940 -96571722 + THE1B LTR MaLR 1 161 -203 879 143 0 0 chr4 87716940 87717066 -96571596 + THE1-int LTR MaLR 531 656 -924 1158 167 30 0 chr4 87717066 87717264 -96571398 + THE1B LTR MaLR 161 364 0 6576 200 41 61 chr4 87717266 87718949 -96569713 + THE1B-int LTR MaLR 3 1651 0 2091 107 16 66 chr4 87718951 87719392 -96569270 + THE1B LTR MaLR 3 375 0 268 320 114 13 chr4 87720230 87720458 -96568204 - L1ME LINE L1 -511 5651 5401 3634 157 39 3 chr4 87720522 87721190 -96567472 - L1PA16 LINE L1 -10 6156 5465 3897 191 23 25 chr4 87721191 87722108 -96566554 + L1 LINE L1 3885 4799 -1347 1220 201 19 42 chr4 87722404 87722753 -96565909 - L1MD1 LINE L1 -246 6390 2081 4601 172 20 12 chr4 87722763 87723623 -96565039 - L1MC2 LINE L1 -41 6303 5437 3939 224 54 27 chr4 87723613 87725259 -96563403 - L1MD1 LINE L1 -4444 2096 321 * 23 54 0 0 chr4 87726562 87726599 -96562063 + AT_rich Low_complexity Low_complexity 1 37 0 245 177 13 51 chr4 87726600 87726679 -96561983 + T-rich Low_complexity Low_complexity 4 79 0 188 149 21 0 chr4 87727287 87727334 -96561328 + T-rich Low_complexity Low_complexity 5 52 0 22 35 0 0 chr4 87727742 87727771 -96560891 + AT_rich Low_complexity Low_complexity 1 29 0 385 316 0 0 chr4 87728321 87728419 -96560243 - MIR SINE MIR -123 139 42 253 275 38 0 chr4 87729265 87729345 -96559317 - LTR67 LTR ERVL -1 556 474 2813 113 8 2 chr4 87730445 87730842 -96557820 + MLT2A1 LTR ERVL 5 403 -41 204 254 0 0 chr4 87730842 87730901 -96557761 + (CATATA)n Simple_repeat Simple_repeat 1 59 0 24 32 0 0 chr4 87730905 87730936 -96557726 + AT_rich Low_complexity Low_complexity 1 31 0 295 125 36 18 chr4 87730936 87730992 -96557670 + MLT2A1 LTR ERVL 388 444 0 3111 89 0 0 chr4 87730992 87731409 -96557253 + HERVL-A1 LTR ERVL 1 417 -5237 4955 25 0 0 chr4 87731421 87731993 -96556669 - L1PA3 LINE L1 -3 6152 5581 627 14 0 0 chr4 87731995 87732069 -96556593 - L1PA3 LINE L1 -759 5396 5323 * 2911 29 0 0 chr4 87732065 87732412 -96556250 + L1P LINE L1 4253 4599 -1547 8188 76 12 0 chr4 87732412 87733475 -96555187 + HERVL LTR ERVL 2562 3637 -2017 2751 74 0 0 chr4 87733479 87733829 -96554833 - HERVL LTR ERVL -2743 2911 2562 496 51 0 0 chr4 87733829 87733888 -96554774 - L1P LINE L1 -1547 4599 4541 6712 114 6 0 chr4 87733888 87734829 -96553833 + HERVL LTR ERVL 3638 4584 -1070 402 74 0 0 chr4 87734938 87734992 -96553670 + (TA)n Simple_repeat Simple_repeat 2 55 0 1476 291 23 31 chr4 87734992 87735696 -96552966 - L1M4 LINE L1 -1319 4827 4130 532 279 57 26 chr4 87735718 87735947 -96552715 - L1M4 LINE L1 -2281 3865 3630 180 152 0 0 chr4 87736664 87736697 -96551965 + (CA)n Simple_repeat Simple_repeat 2 34 0 25 31 0 0 chr4 87736750 87736782 -96551880 + AT_rich Low_complexity Low_complexity 1 32 0 217 273 15 15 chr4 87736887 87736953 -96551709 + (CATATA)n Simple_repeat Simple_repeat 1 66 0 22 35 0 0 chr4 87737271 87737300 -96551362 + AT_rich Low_complexity Low_complexity 1 29 0 199 286 98 45 chr4 87737380 87737492 -96551170 - MIR SINE MIR -13 249 132 29 47 0 0 chr4 87737960 87738003 -96550659 + AT_rich Low_complexity Low_complexity 1 43 0 794 140 0 0 chr4 87738175 87738311 -96550351 - L1PA7 LINE L1 0 6154 6019 32 0 0 0 chr4 87738526 87738558 -96550104 + AT_rich Low_complexity Low_complexity 1 32 0 350 352 7 0 chr4 87738811 87738953 -96549709 + L2 LINE L2 3163 3305 -8 283 288 27 9 chr4 87738987 87739098 -96549564 + ERVL LTR ERVL 2273 2385 -3379 5716 162 14 82 chr4 87739222 87739890 -96548772 - THE1-int LTR MaLR -62 1518 919 643 63 63 0 chr4 87739890 87739985 -96548677 - AluY SINE Alu -2 309 209 5716 162 14 82 chr4 87739985 87740483 -96548179 - THE1-int LTR MaLR -661 919 389 4018 147 47 62 chr4 87740587 87741391 -96547271 + THE1-int LTR MaLR 61 852 -728 562 99 66 0 chr4 87741393 87741484 -96547178 + AluY SINE Alu 210 306 -5 479 186 0 62 chr4 87741484 87741597 -96547065 + THE1-int LTR MaLR 853 958 -622 273 355 7 35 chr4 87741774 87742044 -96546618 + L1M3c LINE L1 155 918 -5213 1082 296 41 49 chr4 87742461 87743119 -96545543 + L1M3c LINE L1 916 1568 -4563 467 169 27 123 chr4 87743271 87743490 -96545172 - L1MA7 LINE L1 0 6291 6094 315 0 0 0 chr4 87743978 87744013 -96544649 + (TTC)n Simple_repeat Simple_repeat 2 36 0 270 0 0 0 chr4 87744013 87744043 -96544619 + (TAA)n Simple_repeat Simple_repeat 3 32 0 1630 178 0 11 chr4 87744043 87744324 -96544338 - AluSg SINE Alu -28 282 5 212 100 33 33 chr4 87744585 87744645 -96544017 + (TA)n Simple_repeat Simple_repeat 2 61 0 3244 262 18 25 chr4 87744885 87745791 -96542871 - L1M1 LINE L1 -6660 905 7 400 218 115 45 chr4 87746227 87746383 -96542279 - ERVL LTR ERVL -3645 2119 1953 442 233 0 10 chr4 87749265 87749368 -96539294 + L1PA15 LINE L1 6063 6164 -1 1475 222 21 18 chr4 87750085 87750423 -96538239 - MER7A DNA MER2_type 0 346 10 641 112 0 0 chr4 87750483 87750581 -96538081 - AluY SINE Alu -17 294 197 392 284 173 42 chr4 87750723 87751012 -96537650 + HAL1 LINE L1 1467 1793 -714 25 31 0 0 chr4 87751243 87751275 -96537387 + AT_rich Low_complexity Low_complexity 1 32 0 257 169 52 13 chr4 87751380 87751457 -96537205 + HAL1 LINE L1 2282 2361 -146 9014 76 6 30 chr4 87752391 87753025 -96535637 + HERVL-A1 LTR ERVL 4423 5014 -640 2395 125 6 0 chr4 87753025 87753378 -96535284 - THE1A LTR MaLR 0 355 1 9014 76 6 30 chr4 87753378 87754005 -96534657 + HERVL-A1 LTR ERVL 5014 5654 0 2669 95 5 31 chr4 87754005 87754396 -96534266 + MLT2A1 LTR ERVL 1 381 -63 195 42 0 0 chr4 87754396 87754420 -96534242 + (TC)n Simple_repeat Simple_repeat 2 25 0 359 168 35 18 chr4 87754420 87754433 -96534229 + (TTATA)n Simple_repeat Simple_repeat 1 12 -182 297 0 0 0 chr4 87754433 87754466 -96534196 + (TG)n Simple_repeat Simple_repeat 2 34 0 359 168 35 18 chr4 87754466 87754611 -96534051 + (TTATA)n Simple_repeat Simple_repeat 12 194 0 284 149 52 23 chr4 87754615 87754789 -96533873 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 328 86 0 52 chr4 87754821 87754879 -96533783 + MLT2A1 LTR ERVL 390 444 0 255 335 82 47 chr4 87755581 87755751 -96532911 + L2 LINE L2 2920 3095 -177 21 36 0 0 chr4 87755845 87755873 -96532789 + AT_rich Low_complexity Low_complexity 1 28 0 1677 256 128 8 chr4 87755892 87756502 -96532160 + L1MEc LINE L1 213 895 -5501 240 211 14 14 chr4 87756559 87756630 -96532032 + L1MEc LINE L1 825 895 -5501 1583 258 49 43 chr4 87756643 87757381 -96531281 + L1MEc LINE L1 1781 2522 -3874 2722 275 86 42 chr4 87757471 87759524 -96529138 + L1MEc LINE L1 2492 4627 -1588 471 274 16 79 chr4 87759549 87759801 -96528861 + L1ME1 LINE L1 5908 6143 -23 1853 172 0 0 chr4 87762530 87762826 -96525836 + AluSx SINE Alu 4 299 -13 29 47 0 0 chr4 87765404 87765447 -96523215 + AT_rich Low_complexity Low_complexity 1 43 0 1037 71 0 0 chr4 87765619 87765759 -96522903 - L1PA7 LINE L1 0 6154 6015 32 0 0 0 chr4 87765970 87766002 -96522660 + AT_rich Low_complexity Low_complexity 1 32 0 451 310 7 0 chr4 87766255 87766397 -96522265 + L2 LINE L2 3163 3305 -8 366 274 82 7 chr4 87766407 87766542 -96522120 + ERVL LTR ERVL 2241 2385 -3379 369 325 66 0 chr4 87766648 87766799 -96521863 + ERVL LTR ERVL 3387 3547 -2217 389 281 82 76 chr4 87766942 87767270 -96521392 + ERVL LTR ERVL 3646 3975 -1789 1104 223 62 26 chr4 87767871 87768280 -96520382 - MLT2B1 LTR ERVL -57 463 1 268 224 13 13 chr4 87768665 87768741 -96519921 + LTR67 LTR ERVL 442 517 -40 1922 105 18 7 chr4 87768744 87769020 -96519642 + AluSq SINE Alu 3 281 -32 228 35 0 0 chr4 87769023 87769052 -96519610 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 375 309 40 20 chr4 87769353 87769502 -96519160 + L3 LINE CR1 1287 1438 -139 197 377 47 28 chr4 87769495 87769601 -96519061 + MIR SINE MIR 34 141 -121 * 563 161 51 17 chr4 87769618 87769736 -96518926 + LTR37B LTR ERV1 347 468 0 447 281 128 40 chr4 87770157 87770495 -96518167 + MLT1H LTR MaLR 12 408 -147 180 152 0 0 chr4 87771873 87771906 -96516756 + (CA)n Simple_repeat Simple_repeat 2 34 0 25 31 0 0 chr4 87771959 87771991 -96516671 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr4 87772479 87772508 -96516154 + AT_rich Low_complexity Low_complexity 1 29 0 186 298 116 41 chr4 87772588 87772709 -96515953 - MIR SINE MIR -13 249 120 280 323 26 49 chr4 87772938 87773164 -96515498 + L2 LINE L2 3087 3307 -6 25 31 0 0 chr4 87773634 87773666 -96514996 + AT_rich Low_complexity Low_complexity 1 32 0 312 294 35 0 chr4 87774095 87774180 -96514482 - L2 LINE L2 -211 3061 2974 364 291 55 36 chr4 87774572 87774737 -96513925 - MLT1J LTR MaLR -51 460 293 485 294 7 7 chr4 87774806 87774949 -96513713 - MLT1J LTR MaLR -318 193 51 770 271 79 97 chr4 87774956 87775178 -96513484 - L2 LINE L2 -5 3308 3084 629 289 50 10 chr4 87775178 87775379 -96513283 + MER63A DNA MER1_type 2 210 0 770 271 79 97 chr4 87775379 87776019 -96512643 - L2 LINE L2 -229 3084 2421 1075 179 205 20 chr4 87776058 87776355 -96512307 + L1MA9 LINE L1 5938 6289 -23 368 332 99 49 chr4 87778369 87778592 -96510070 - MIR SINE MIR -19 243 10 794 228 58 106 chr4 87778633 87779028 -96509634 + MLT1D LTR MaLR 1 376 -129 302 209 44 0 chr4 87779378 87779469 -96509193 - L1MB3 LINE L1 -2 6181 6087 5816 213 46 14 chr4 87779481 87782378 -96506284 - L1MA4 LINE L1 -289 6011 2926 1618 241 10 19 chr4 87782359 87782769 -96505893 + L1 LINE L1 2219 2624 -3522 * 249 239 28 18 chr4 87782889 87782998 -96505664 - L1M4 LINE L1 -2919 3227 3118 4204 213 79 17 chr4 87783175 87784504 -96504158 - L1MC3 LINE L1 -23 7762 6311 1021 139 23 33 chr4 87784508 87784723 -96503939 - L1MA6 LINE L1 -5 6295 6083 227 88 0 0 chr4 87784728 87784762 -96503900 + L1MA6 LINE L1 6006 6039 -261 2394 190 33 20 chr4 87784762 87785533 -96503129 + MER52A LTR ERV1 401 1278 0 4103 248 59 55 chr4 87785533 87787379 -96501283 - L1MCa LINE L1 -767 5659 3807 934 161 22 59 chr4 87787379 87787669 -96500993 - MLT1A1 LTR MaLR 0 365 1 3207 270 28 47 chr4 87787683 87788216 -96500446 - L1MCa LINE L1 -2629 3797 3255 2143 155 61 10 chr4 87788216 87788623 -96500039 + MSTA LTR MaLR 1 428 0 3207 270 28 47 chr4 87788623 87789616 -96499046 - L1MCa LINE L1 -3171 3255 2304 1298 206 76 3 chr4 87789616 87789907 -96498755 - AluJb SINE Alu 0 312 1 3207 270 28 47 chr4 87789907 87790105 -96498557 - L1MCa LINE L1 -4122 2304 2104 288 261 18 18 chr4 87790862 87790975 -96497687 - L1MCa LINE L1 -861 1926 1708 2391 90 0 3 chr4 87791214 87791526 -96497136 - AluY SINE Alu 0 311 1 522 211 37 3 chr4 87791674 87791815 -96496847 - L1PB4 LINE L1 -3 6153 6023 2051 125 0 33 chr4 87792281 87792586 -96496076 + AluSx SINE Alu 1 295 -17 403 308 85 33 chr4 87792643 87792942 -96495720 + MLT1H1 LTR MaLR 49 412 -183 532 336 131 26 chr4 87793100 87793490 -96495172 - HAL1 LINE L1 -937 1570 1140 234 308 8 51 chr4 87793498 87793615 -96495047 - HAL1 LINE L1 -1642 865 754 3689 208 74 51 chr4 87794238 87794508 -96494154 - L1MCb LINE L1 -4498 2066 1804 2197 94 7 23 chr4 87794508 87794816 -96493846 - AluSc SINE Alu -6 303 1 3689 208 74 51 chr4 87794816 87795341 -96493321 - L1MCb LINE L1 -4760 1804 1292 2321 177 64 6 chr4 87795341 87795822 -96492840 - LTR22 LTR ERVK 0 509 1 3689 208 74 51 chr4 87795822 87796959 -96491703 - L1MCb LINE L1 -5272 1292 3 186 133 0 0 chr4 87797670 87797700 -96490962 + (A)n Simple_repeat Simple_repeat 1 30 0 5151 229 37 30 chr4 87797747 87799255 -96489407 + L1 LINE L1 2168 3685 -2461 469 248 17 0 chr4 87799958 87800075 -96488587 - MER103 DNA DNA -46 120 2 1705 179 114 39 chr4 87800792 87801315 -96487347 - MLT2A2 LTR ERVL 0 554 1 1612 314 154 43 chr4 87803037 87803221 -96485441 - L2 LINE L2 -6 3307 3145 2272 88 3 0 chr4 87803221 87803515 -96485147 - AluY SINE Alu -16 295 1 1612 314 154 43 chr4 87803515 87804052 -96484610 - L2 LINE L2 -168 3145 2669 2274 69 3 35 chr4 87804052 87804371 -96484291 + AluSc SINE Alu 1 309 0 1612 314 154 43 chr4 87804371 87804930 -96483732 - L2 LINE L2 -644 2669 1783 260 257 167 22 chr4 87805991 87806213 -96482449 - HAL1 LINE L1 -146 2361 2108 510 282 191 29 chr4 87806435 87806853 -96481809 - HAL1 LINE L1 -714 1793 1308 758 65 0 49 chr4 87806862 87806985 -96481677 + AluY SINE Alu 195 311 0 1859 172 18 15 chr4 87807022 87807360 -96481302 + MER7A DNA MER2_type 10 346 0 383 296 55 0 chr4 87807362 87807582 -96481080 - HAL1 LINE L1 -1222 1285 1054 1643 283 85 32 chr4 87807632 87808328 -96480334 - L1ME3A LINE L1 -15 6549 5817 322 331 89 32 chr4 87808510 87808758 -96479904 - L1ME3A LINE L1 -4712 1828 1567 1915 247 126 25 chr4 87808838 87809738 -96478924 - L1ME1 LINE L1 -76 6090 5099 1484 179 43 21 chr4 87810159 87810439 -96478223 + AluJo SINE Alu 2 287 -25 224 146 0 21 chr4 87810448 87810496 -96478166 + (TA)n Simple_repeat Simple_repeat 1 47 0 239 217 33 0 chr4 87810543 87810603 -96478059 + L1MC4 LINE L1 6638 6699 -1343 731 150 19 50 chr4 87810811 87810943 -96477719 + L1MA3 LINE L1 6151 6279 -26 2252 139 17 3 chr4 87810943 87811302 -96477360 + THE1B LTR MaLR 1 364 0 731 150 19 50 chr4 87811302 87811329 -96477333 + L1MA3 LINE L1 6279 6305 0 2401 56 7 3 chr4 87812294 87812596 -96476066 - AluY SINE Alu -8 303 1 21 0 0 0 chr4 87812717 87812738 -96475924 + AT_rich Low_complexity Low_complexity 1 21 0 1873 235 81 53 chr4 87813544 87814499 -96474163 - L1ME1 LINE L1 -223 5943 5016 1659 164 7 14 chr4 87814499 87814791 -96473871 - AluJb SINE Alu -5 307 18 1873 235 81 53 chr4 87814791 87814979 -96473683 - L1ME1 LINE L1 -1150 5016 4835 1382 173 48 48 chr4 87814979 87815268 -96473394 - AluJb SINE Alu -13 289 1 1873 235 81 53 chr4 87815268 87815394 -96473268 - L1ME1 LINE L1 -1331 4835 4639 941 144 34 0 chr4 87815398 87815544 -96473118 - Tigger5 DNA MER2_type 0 2323 2173 4690 171 35 1 chr4 87815599 87816452 -96472210 + L1PA16 LINE L1 5285 6166 0 237 204 0 0 chr4 87816459 87816508 -96472154 + L1MB8 LINE L1 6124 6172 -6 1080 180 10 0 chr4 87817149 87817343 -96471319 + MLT2B1 LTR ERVL 3 198 -322 547 264 52 32 chr4 87817325 87817480 -96471182 + MLT2B3 LTR ERVL 397 554 0 * 10806 222 31 13 chr4 87817503 87819756 -96468906 + ERVL-B3 LTR ERVL 22 2314 -3450 358 148 19 0 chr4 87819756 87819810 -96468852 + Tigger5 DNA MER2_type 1 55 -2268 * 373 192 14 14 chr4 87819779 87819852 -96468810 + Tigger5 DNA MER2_type 2251 2323 0 5684 202 13 43 chr4 87819852 87821025 -96467637 + ERVL-B3 LTR ERVL 2313 3450 -2314 21 0 0 0 chr4 87821285 87821306 -96467356 + AT_rich Low_complexity Low_complexity 1 21 0 201 94 0 0 chr4 87821524 87821556 -96467106 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 236 328 0 0 chr4 87822521 87822588 -96466074 - MIR SINE MIR -7 255 189 261 128 0 0 chr4 87823508 87823555 -96465107 + (TG)n Simple_repeat Simple_repeat 1 47 0 738 36 89 5 chr4 87823997 87824210 -96464452 + (TA)n Simple_repeat Simple_repeat 2 232 0 288 274 163 53 chr4 87824830 87825020 -96463642 + LTR16A1 LTR ERVL 1 211 -246 469 297 55 72 chr4 87825252 87825542 -96463120 + ERVL LTR ERVL 2305 2589 -3175 284 206 162 0 chr4 87825652 87825720 -96462942 + ERVL LTR ERVL 2680 2758 -2238 1424 46 97 0 chr4 87825838 87826034 -96462628 - L1PA8 LINE L1 -5 6167 5953 720 73 0 0 chr4 87826281 87826377 -96462285 - L1 LINE L1 -1341 4805 4710 19020 23 0 0 chr4 87826847 87829682 -96458980 + L1HS LINE L1 3125 5959 -196 239 53 0 0 chr4 87829783 87829821 -96458841 + L1MC3 LINE L1 7734 7771 -14 25 0 0 0 chr4 87830201 87830226 -96458436 + AT_rich Low_complexity Low_complexity 1 25 0 9703 176 38 55 chr4 87830231 87831864 -96456798 - L1MA4 LINE L1 -9 7710 6051 1036 110 0 0 chr4 87831864 87832000 -96456662 + AluSq/x SINE Alu 1 136 -177 9703 176 38 55 chr4 87832000 87833835 -96454827 - L1MA4 LINE L1 -1668 6051 4173 1335 226 95 4 chr4 87833860 87834286 -96454376 - L1MD3 LINE L1 -27 6139 5685 317 135 0 0 chr4 87834308 87834360 -96454302 + Alu SINE Alu 251 302 0 993 156 6 12 chr4 87834381 87834554 -96454108 + AluJb SINE Alu 121 292 -20 7857 226 94 21 chr4 87834554 87835219 -96453443 - L1MA4 LINE L1 -3397 4168 3553 684 89 0 0 chr4 87835219 87835320 -96453342 + (TTCC)n Simple_repeat Simple_repeat 4 104 0 7857 226 94 21 chr4 87835320 87837869 -96450793 - L1MA4 LINE L1 -4012 3553 13 755 368 10 15 chr4 87837869 87837965 -96450697 + ERVL LTR ERVL 4714 4809 -955 2162 139 19 8 chr4 87837965 87838325 -96450337 + THE1B LTR MaLR 1 364 0 755 368 10 15 chr4 87838325 87838625 -96450037 + ERVL LTR ERVL 4809 5108 -656 402 121 0 48 chr4 87838869 87838952 -96449710 + L1PA13 LINE L1 6081 6159 -4 1073 247 125 20 chr4 87839054 87839358 -96449304 + LTR40a LTR ERVL 184 519 0 24023 43 42 2 chr4 87839667 87842733 -96445929 + L1P LINE L1 1 3189 -2957 467 107 13 0 chr4 87842963 87843038 -96445624 + (TA)n Simple_repeat Simple_repeat 1 76 0 705 280 52 5 chr4 87843518 87843729 -96444933 - LTR16C LTR ERVL -19 472 252 522 238 87 6 chr4 87843738 87843910 -96444752 - L1M4 LINE L1 -2009 4137 3952 2244 91 7 0 chr4 87844252 87844549 -96444113 - AluSp SINE Alu -14 299 1 245 272 168 69 chr4 87844549 87844751 -96443911 - MIR SINE MIR -39 223 2 433 324 102 35 chr4 87844954 87845156 -96443506 + L1M4 LINE L1 4074 4261 -1885 1778 229 0 5 chr4 87845156 87845523 -96443139 - MLT1A1 LTR MaLR 0 365 1 433 324 102 35 chr4 87845523 87845694 -96442968 + L1M4 LINE L1 4261 4472 -1674 268 214 29 0 chr4 87846912 87846982 -96441680 - MER116 DNA Mariner 0 80 9 204 40 0 0 chr4 87847780 87847805 -96440857 + (A)n Simple_repeat Simple_repeat 1 25 0 4546 248 64 53 chr4 87847999 87848520 -96440142 + L1MB7 LINE L1 23 537 -6107 2576 106 8 0 chr4 87848520 87848878 -96439784 + THE1B LTR MaLR 2 362 -2 4546 248 64 53 chr4 87848878 87851587 -96437075 + L1MB7 LINE L1 537 3396 -3248 4467 227 65 18 chr4 87851586 87851604 -96437058 + L1MB7 LINE L1 4401 4417 -2265 * 2373 65 0 20 chr4 87851604 87851910 -96436752 + AluY SINE Alu 1 300 -11 4467 227 65 18 chr4 87851910 87852576 -96436086 + L1MB7 LINE L1 4417 5050 -1632 1908 170 0 0 chr4 87852576 87852876 -96435786 + AluSx SINE Alu 1 300 -12 4467 227 65 18 chr4 87852876 87852923 -96435739 + L1MB7 LINE L1 5050 5093 -1589 2201 144 28 17 chr4 87852923 87853283 -96435379 - THE1B LTR MaLR 0 364 1 4467 227 65 18 chr4 87853283 87854722 -96433940 + L1MB7 LINE L1 5093 6681 -1 24 0 0 0 chr4 87854754 87854778 -96433884 + AT_rich Low_complexity Low_complexity 1 24 0 583 123 0 0 chr4 87854778 87854859 -96433803 + AluSg/x SINE Alu 216 296 -14 859 172 105 5 chr4 87855168 87855377 -96433285 + ORSL DNA AcHobo 45 274 -1 591 37 92 18 chr4 87857131 87857295 -96431367 + (TA)n Simple_repeat Simple_repeat 1 176 0 424 242 40 0 chr4 87857504 87857628 -96431034 + L1M1 LINE L1 2878 3006 -4559 1185 323 46 17 chr4 87857632 87858151 -96430511 + L1M3a LINE L1 11 727 -5228 346 368 0 0 chr4 87858447 87858583 -96430079 + L1MB7 LINE L1 1231 1366 -5343 * 895 198 4 21 chr4 87858582 87858819 -96429843 + L1MB7 LINE L1 1788 2020 -4769 1920 135 29 55 chr4 87858822 87859207 -96429455 - THE1C LTR MaLR 0 375 1 4467 201 56 8 chr4 87859209 87860646 -96428016 + L1MB7 LINE L1 5321 6825 -1 24 0 0 0 chr4 87860678 87860702 -96427960 + AT_rich Low_complexity Low_complexity 1 24 0 587 123 0 0 chr4 87860702 87860783 -96427879 + AluSg/x SINE Alu 216 296 -14 859 172 105 5 chr4 87861092 87861301 -96427361 + ORSL DNA AcHobo 45 274 -1 672 0 94 0 chr4 87863055 87863183 -96425479 + (TA)n Simple_repeat Simple_repeat 1 140 0 217 233 44 0 chr4 87863194 87863284 -96425378 + (TA)n Simple_repeat Simple_repeat 1 94 0 406 106 28 67 chr4 87863288 87863467 -96425195 + (TTATA)n Simple_repeat Simple_repeat 5 176 0 213 108 14 68 chr4 87863487 87863561 -96425101 + (TA)n Simple_repeat Simple_repeat 1 70 0 264 324 10 20 chr4 87863706 87863808 -96424854 + MLT2E LTR ERVL 35 135 -493 1847 178 0 0 chr4 87864917 87865210 -96423452 + AluJb SINE Alu 11 303 -9 374 282 8 16 chr4 87865251 87865375 -96423287 + MLT1H LTR MaLR 43 165 -384 503 299 52 0 chr4 87865375 87865509 -96423153 - MIR SINE MIR -120 142 2 13329 200 43 36 chr4 87865556 87869454 -96419208 + L1P3 LINE L1 10 4040 -2421 1326 92 0 38 chr4 87870536 87870896 -96417766 - AluY SINE Alu 0 456 104 583 237 188 54 chr4 87871572 87872020 -96416642 - Charlie4a DNA MER1_type 0 508 1 2853 91 20 5 chr4 87872948 87873342 -96415320 + MLT2A1 LTR ERVL 1 400 -44 384 178 0 0 chr4 87873359 87873432 -96415230 + (TA)n Simple_repeat Simple_repeat 1 73 0 254 114 0 0 chr4 87873432 87873476 -96415186 + MLT2A1 LTR ERVL 357 400 -44 423 125 21 10 chr4 87873478 87873574 -96415088 + (TA)n Simple_repeat Simple_repeat 2 98 0 455 98 0 0 chr4 87873574 87873635 -96415027 - MLT2A1 LTR ERVL -115 329 269 365 109 0 0 chr4 87873666 87873721 -96414941 + MLT2A2 LTR ERVL 399 453 0 1182 280 88 14 chr4 87874433 87874990 -96413672 - HAL1 LINE L1 -590 1917 1320 4952 135 13 0 chr4 87875352 87876608 -96412054 - L1PA16 LINE L1 0 6166 4873 3253 207 11 8 chr4 87876626 87877364 -96411298 + L1 LINE L1 3672 4411 -1735 1989 157 11 136 chr4 87877399 87877958 -96410704 - LTR22B LTR ERVK -3 489 1 698 182 7 0 chr4 87877958 87878101 -96410561 + L1 LINE L1 4405 4548 -1598 194 325 169 24 chr4 87878328 87878583 -96410079 + L2 LINE L2 2595 2886 -428 203 179 0 0 chr4 87878772 87878811 -96409851 + T-rich Low_complexity Low_complexity 1 39 0 355 273 21 7 chr4 87878845 87878988 -96409674 + MER31-int LTR ERV1 1682 1826 -3110 462 284 35 76 chr4 87879263 87879460 -96409202 + MER92C LTR ERV1 1 189 -365 350 115 0 0 chr4 87879519 87879571 -96409091 + MER92C LTR ERV1 503 554 0 4253 192 50 57 chr4 87879887 87880946 -96407716 + L1MC2 LINE L1 4488 5533 -811 2265 65 0 31 chr4 87880946 87881274 -96407388 - AluY SINE Alu 0 319 1 4253 192 50 57 chr4 87881274 87882072 -96406590 + L1MC2 LINE L1 5533 6335 -9 180 231 88 88 chr4 87882107 87882198 -96406464 + L3 LINE CR1 230 320 -1257 2468 247 36 69 chr4 87882874 87882983 -96405679 + MER31-int LTR ERV1 3171 3282 -1654 198 0 0 0 chr4 87882983 87883005 -96405657 + (CAA)n Simple_repeat Simple_repeat 2 23 0 2468 247 36 69 chr4 87883005 87883784 -96404878 + MER31-int LTR ERV1 3282 4022 -914 1477 199 57 80 chr4 87883784 87884297 -96404365 - MLT1D LTR MaLR -4 501 1 2468 247 36 69 chr4 87884297 87884455 -96404207 + MER31-int LTR ERV1 4022 4184 -752 293 238 127 123 chr4 87884539 87884783 -96403879 + LTR37A LTR ERV1 1 245 -181 318 226 86 0 chr4 87884832 87884925 -96403737 + MER31-int LTR ERV1 4370 4470 -466 258 247 0 39 chr4 87884990 87885067 -96403595 + MER31-int LTR ERV1 4482 4555 -381 314 206 0 0 chr4 87885669 87885737 -96402925 + MER92C LTR ERV1 487 554 0 855 280 34 8 chr4 87885824 87886063 -96402599 - MIR SINE MIR -16 246 2 25 0 0 0 chr4 87886261 87886286 -96402376 + AT_rich Low_complexity Low_complexity 1 25 0 585 326 48 13 chr4 87886339 87886569 -96402093 + MIR SINE MIR 8 245 -17 223 147 59 15 chr4 87886875 87886943 -96401719 + (TA)n Simple_repeat Simple_repeat 2 72 0 311 253 111 37 chr4 87887292 87887454 -96401208 - HAL1 LINE L1 -134 2373 2200 2425 141 3 0 chr4 87887463 87887826 -96400836 - THE1B LTR MaLR 0 364 1 9423 123 53 35 chr4 87887826 87889379 -96399283 - THE1B-int LTR MaLR 0 1580 1 261 150 0 0 chr4 87889379 87889419 -96399243 - THE1B LTR MaLR 0 364 325 1459 162 228 18 chr4 87889420 87889754 -96398908 - MER4A LTR ERV1 0 664 261 361 197 0 13 chr4 87889754 87889830 -96398832 - MER4A LTR ERV1 -566 98 24 1880 117 60 104 chr4 87889830 87890299 -96398363 + LTR7 LTR ERV1 1 448 -2 8420 144 32 40 chr4 87890301 87892033 -96396629 + HERVH LTR ERV1 1 1287 -5242 19179 71 6 4 chr4 87892067 87894751 -96393911 + HERVH LTR ERV1 1945 7713 0 1885 115 62 105 chr4 87894751 87895219 -96393443 + LTR7 LTR ERV1 1 448 -2 15751 112 50 22 chr4 87895252 87897938 -96390724 - MER4A-int LTR ERV1 -2 6596 3837 3324 138 68 45 chr4 87897991 87898548 -96390114 - MER4A-int LTR ERV1 -3065 3533 2951 2275 106 0 0 chr4 87898548 87898840 -96389822 - AluSq SINE Alu -19 294 3 3324 138 68 45 chr4 87898840 87899074 -96389588 - MER4A-int LTR ERV1 -3647 2951 2724 1943 108 26 31 chr4 87899079 87899431 -96389231 - MER4A-int LTR ERV1 -4493 2105 1756 4899 138 93 50 chr4 87899439 87899452 -96389210 - MER4A-int LTR ERV1 -417 1369 1358 219 114 0 0 chr4 87899452 87899487 -96389175 + (CA)n Simple_repeat Simple_repeat 2 36 0 4899 138 93 50 chr4 87899487 87900426 -96388236 - MER4A-int LTR ERV1 -428 1358 170 1303 244 42 7 chr4 87900479 87900786 -96387876 - MER4A-int LTR ERV1 -4170 2161 1844 2840 88 150 66 chr4 87900809 87901503 -96387159 - MER4A-int LTR ERV1 -5745 853 1 1787 141 10 17 chr4 87901514 87901804 -96386858 - MER4A LTR ERV1 -6 658 371 556 135 31 10 chr4 87901855 87901951 -96386711 - MER4A LTR ERV1 -566 98 1 * 2197 132 15 0 chr4 87901951 87902273 -96386389 - THE1B LTR MaLR -37 327 1 23 92 0 0 chr4 87902273 87902338 -96386324 + AT_rich Low_complexity Low_complexity 1 65 0 28 61 0 0 chr4 87902356 87902405 -96386257 + AT_rich Low_complexity Low_complexity 1 49 0 265 177 16 0 chr4 87902423 87902485 -96386177 - L1MA4 LINE L1 -26 6274 6212 1452 239 57 36 chr4 87902486 87902716 -96385946 - LTR2 LTR ERV1 0 449 225 252 0 0 0 chr4 87902716 87902744 -96385918 + (CAGAA)n Simple_repeat Simple_repeat 2 29 0 1452 239 57 36 chr4 87902744 87902953 -96385709 - LTR2 LTR ERV1 -224 225 1 51038 72 26 20 chr4 87902953 87909340 -96379322 - Harlequin LTR ERV1 0 6896 463 2489 76 0 0 chr4 87909340 87909644 -96379018 - AluY SINE Alu -7 304 1 51038 72 26 20 chr4 87909644 87910110 -96378552 - Harlequin LTR ERV1 -6433 463 1 1919 180 93 32 chr4 87910110 87910572 -96378090 - LTR2B LTR ERV1 0 490 1 840 206 5 0 chr4 87910572 87910756 -96377906 - L1MA4 LINE L1 -86 6214 6030 799 273 108 35 chr4 87910760 87911215 -96377447 - HAL1 LINE L1 -417 2090 1603 222 91 0 0 chr4 87911647 87911680 -96376982 + (TC)n Simple_repeat Simple_repeat 1 33 0 299 252 221 15 chr4 87911741 87911872 -96376790 - LTR41 LTR ERVL -615 158 1 613 222 30 161 chr4 87911903 87912371 -96376291 - HAL1 LINE L1 -945 1562 1158 296 281 8 78 chr4 87912432 87912560 -96376102 + L2 LINE L2 3191 3309 -4 418 257 46 33 chr4 87912576 87912817 -96375845 - HAL1 LINE L1 -1424 1083 840 281 307 37 37 chr4 87913357 87913546 -96375116 - L2 LINE L2 -848 2466 2278 259 232 0 0 chr4 87914142 87914198 -96374464 - MLT1D LTR MaLR -2 503 448 18620 175 32 16 chr4 87914201 87916689 -96371973 + L1MA1 LINE L1 16 2464 -5257 1992 118 6 46 chr4 87916689 87917012 -96371650 + AluSg SINE Alu 1 310 0 18620 175 32 16 chr4 87917012 87917925 -96370737 + L1MA1 LINE L1 2464 3361 -4360 222 37 0 0 chr4 87917925 87917952 -96370710 + (GAAA)n Simple_repeat Simple_repeat 1 27 0 18620 175 32 16 chr4 87917952 87920012 -96368650 + L1MA1 LINE L1 3361 5387 -2334 1893 144 0 45 chr4 87920012 87920324 -96368338 + AluSx SINE Alu 3 300 -12 18620 175 32 16 chr4 87920324 87922329 -96366333 + L1MA1 LINE L1 5387 7615 -106 905 282 91 30 chr4 87922330 87922692 -96365970 - MLT1D LTR MaLR -62 443 60 1247 225 58 7 chr4 87922749 87923025 -96365637 - AluJo SINE Alu -20 292 3 3577 183 62 26 chr4 87924494 87925252 -96363410 - LTR1 LTR ERV1 0 785 1 387 297 36 46 chr4 87925544 87925699 -96362963 + L1MCb LINE L1 46 201 -6060 3370 79 25 0 chr4 87925699 87926141 -96362521 + MLT2A2 LTR ERVL 1 453 0 387 297 36 46 chr4 87926141 87926317 -96362345 + L1MCb LINE L1 201 559 -5702 1729 190 15 54 chr4 87926466 87926872 -96361790 - MLT1B LTR MaLR 0 390 1 1466 277 62 50 chr4 87927021 87928004 -96360658 + L1MCb LINE L1 572 1698 -4866 258 32 0 0 chr4 87928004 87928035 -96360627 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1466 277 62 50 chr4 87928035 87928321 -96360341 + L1MCb LINE L1 1698 1979 -4585 1195 325 46 17 chr4 87928351 87928870 -96359792 + L1M3a LINE L1 11 727 -5228 353 368 0 0 chr4 87929166 87929302 -96359360 + L1MA9 LINE L1 1231 1366 -5343 * 872 198 4 21 chr4 87929301 87929538 -96359124 + L1MA9 LINE L1 1788 2020 -4769 1962 129 29 57 chr4 87929541 87929927 -96358735 - THE1C LTR MaLR 0 375 1 2480 207 33 25 chr4 87929927 87930619 -96358043 - L1M2 LINE L1 -4320 2848 2146 253 369 0 0 chr4 87930618 87930721 -96357941 - L1M2 LINE L1 -5343 1745 1643 * 433 100 0 0 chr4 87930811 87930871 -96357791 + THE1-int LTR MaLR 258 317 -1263 6982 216 65 25 chr4 87930888 87933076 -96355586 + L1MA9 LINE L1 3806 6081 -743 2401 173 14 16 chr4 87933078 87933507 -96355155 + MSTA LTR MaLR 1 428 0 5606 203 46 4 chr4 87933507 87934614 -96354048 + MSTA-int LTR MaLR 1 1154 -497 1641 151 59 19 chr4 87934629 87934953 -96353709 - THE1C LTR MaLR -37 338 2 9409 139 40 4 chr4 87934954 87936478 -96352184 - THE1C-int LTR MaLR 0 1580 2 1688 157 58 25 chr4 87936479 87936842 -96351820 - THE1C LTR MaLR 0 375 1 2494 203 10 8 chr4 87936842 87937095 -96351567 + MSTA-int LTR MaLR 1158 1414 -237 207 0 0 0 chr4 87937095 87937118 -96351544 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2494 203 10 8 chr4 87937118 87937357 -96351305 + MSTA-int LTR MaLR 1414 1651 0 2148 153 32 39 chr4 87937357 87937788 -96350874 + MSTA LTR MaLR 1 428 0 3690 173 38 60 chr4 87937794 87938136 -96350526 + L1MA9 LINE L1 6085 6433 -521 261 0 0 0 chr4 87938136 87938165 -96350497 + (TG)n Simple_repeat Simple_repeat 1 29 0 3690 173 38 60 chr4 87938165 87938711 -96349951 + L1MA9 LINE L1 6433 6954 0 237 33 0 0 chr4 87939736 87939766 -96348896 + (CA)n Simple_repeat Simple_repeat 1 30 0 1402 123 12 29 chr4 87940431 87940674 -96347988 + MER21A LTR ERV1 19 257 -674 * 2772 174 70 24 chr4 87940672 87941212 -96347450 + MER21A LTR ERV1 367 931 0 29963 117 15 58 chr4 87942738 87949180 -96339482 + L1PA7 LINE L1 2 6154 0 221 50 0 75 chr4 87949805 87949845 -96338817 + (GGAAA)n Simple_repeat Simple_repeat 3 39 0 292 221 52 26 chr4 87950245 87950322 -96338340 - L2 LINE L2 -11 3302 3224 1664 201 153 43 chr4 87951128 87951591 -96337071 + MER67D LTR ERV1 1 514 0 3024 180 85 20 chr4 87951882 87952565 -96336097 + LTR8A LTR ERV1 1 727 0 243 233 0 17 chr4 87952856 87952916 -96335746 + L2 LINE L2 884 942 -2372 889 168 6 6 chr4 87952935 87953102 -96335560 - MER41C LTR ERV1 0 554 388 358 87 0 0 chr4 87953103 87953149 -96335513 - MER41B LTR ERV1 0 635 590 2914 126 54 15 chr4 87953150 87953668 -96334994 - MER41A-int LTR ERV1 -2370 3576 3039 2476 131 61 41 chr4 87953670 87954185 -96334477 - MER41A-int LTR ERV1 -3845 3971 1359 947 181 7 6 chr4 87954217 87954393 -96334269 - MER41A-int LTR ERV1 -4563 3253 930 * 4212 137 45 11 chr4 87954377 87955184 -96333478 - MER41A-int LTR ERV1 -5241 705 1 4025 89 9 5 chr4 87955249 87955801 -96332861 - MER41A LTR ERV1 0 554 1 1154 257 112 121 chr4 87955806 87956964 -96331698 + L2 LINE L2 966 2113 -1201 560 283 28 39 chr4 87956968 87957148 -96331514 - MER5B DNA MER1_type 0 178 1 1166 325 89 34 chr4 87957655 87958690 -96329972 + L2 LINE L2 2200 3310 -3 883 149 0 6 chr4 87961123 87961284 -96327378 + L1MA4 LINE L1 6130 6289 -11 480 246 108 10 chr4 87961874 87962069 -96326593 - MLT2F LTR ERVL -28 635 422 479 285 139 0 chr4 87962227 87962392 -96326270 - MLT2F LTR ERVL -470 193 6 812 118 43 12 chr4 87962411 87962536 -96326126 - L1P LINE L1 -768 5378 5245 * 4631 44 14 0 chr4 87962534 87963106 -96325556 + L1PA4 LINE L1 5449 6028 -127 4953 100 11 0 chr4 87962536 87963241 -96325421 + L1PA8 LINE L1 5449 6163 -9 812 118 43 12 chr4 87963241 87963276 -96325386 - L1P LINE L1 -901 5245 5213 * 814 279 10 47 chr4 87963265 87963652 -96325010 - MLT1B-int LTR MaLR -1118 533 161 3446 194 62 26 chr4 87964082 87964840 -96323822 - LTR1 LTR ERV1 0 785 1 309 325 33 20 chr4 87965131 87965282 -96323380 + L1MCb LINE L1 46 198 -5847 3303 91 18 0 chr4 87965286 87965726 -96322936 + MLT2A2 LTR ERVL 1 448 -5 308 271 17 42 chr4 87965762 87965880 -96322782 + L1MCb LINE L1 229 343 -5702 1247 235 20 57 chr4 87966053 87966458 -96322204 - MLT1B LTR MaLR 0 390 1 1250 281 52 33 chr4 87966605 87967346 -96321316 + L1MCb LINE L1 570 1322 -4851 833 244 68 28 chr4 87967459 87967845 -96320817 - L1 LINE L1 -1800 4346 3919 2480 50 0 10 chr4 87967845 87968148 -96320514 - AluY SINE Alu -11 300 1 24 53 0 0 chr4 87968331 87968369 -96320293 + AT_rich Low_complexity Low_complexity 1 38 0 30 0 0 0 chr4 87968571 87968601 -96320061 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr4 87968824 87968862 -96319800 + AT_rich Low_complexity Low_complexity 1 38 0 317 295 39 47 chr4 87969337 87969466 -96319196 + MIR SINE MIR 86 213 -49 209 222 16 0 chr4 87969750 87969813 -96318849 + (TA)n Simple_repeat Simple_repeat 1 64 0 34 24 0 0 chr4 87970255 87970296 -96318366 + AT_rich Low_complexity Low_complexity 1 41 0 31 0 0 0 chr4 87972176 87972207 -96316455 + AT_rich Low_complexity Low_complexity 1 31 0 28 79 0 0 chr4 87974260 87974323 -96314339 + AT_rich Low_complexity Low_complexity 1 63 0 451 169 0 12 chr4 87975033 87975116 -96313546 + THE1B LTR MaLR 1 82 -346 186 94 19 38 chr4 87975140 87975193 -96313469 + (TTTAA)n Simple_repeat Simple_repeat 5 56 0 1346 161 18 48 chr4 87975219 87975492 -96313170 + THE1B LTR MaLR 98 362 -2 9010 127 18 82 chr4 87975496 87976069 -96312593 + THE1C-int LTR MaLR 3 611 -969 12907 139 11 7 chr4 87976069 87979039 -96309623 - L1PA10 LINE L1 -5 6163 3178 9010 127 18 82 chr4 87979039 87980151 -96308511 + THE1C-int LTR MaLR 611 1580 0 1672 186 52 27 chr4 87980151 87980517 -96308145 + THE1C LTR MaLR 1 375 0 1797 159 14 0 chr4 87983006 87983295 -96305367 - AluSx SINE Alu -13 299 7 223 365 19 10 chr4 87984417 87984521 -96304141 - L2 LINE L2 -271 3042 2938 23 33 0 0 chr4 87984526 87984556 -96304106 + AT_rich Low_complexity Low_complexity 1 30 0 39 22 0 0 chr4 87984771 87984817 -96303845 + AT_rich Low_complexity Low_complexity 1 46 0 329 277 183 35 chr4 87984987 87985189 -96303473 + MLT1H LTR MaLR 121 352 -197 1814 169 0 0 chr4 87985231 87985510 -96303152 - AluSx SINE Alu -30 282 4 323 194 0 0 chr4 87985519 87985581 -96303081 + MLT1H LTR MaLR 488 549 0 183 42 0 0 chr4 87986300 87986324 -96302338 + (CAA)n Simple_repeat Simple_repeat 2 25 0 333 0 0 0 chr4 87986370 87986407 -96302255 + (TA)n Simple_repeat Simple_repeat 1 37 0 22 56 0 0 chr4 87987218 87987254 -96301408 + AT_rich Low_complexity Low_complexity 1 36 0 240 314 12 12 chr4 87987343 87987429 -96301233 + L2 LINE L2 3222 3307 -6 8259 222 70 35 chr4 87987789 87988583 -96300079 + L1M2b LINE L1 1 766 -6443 3537 151 10 34 chr4 87988583 87989199 -96299463 - LTR26 LTR ERV1 0 603 3 8259 222 70 35 chr4 87989199 87991458 -96297204 + L1M2b LINE L1 766 3257 -3952 2269 82 0 47 chr4 87991458 87991776 -96296886 + AluY SINE Alu 1 303 -8 249 159 0 0 chr4 87991776 87991820 -96296842 + (TA)n Simple_repeat Simple_repeat 1 44 0 3854 212 20 6 chr4 87991845 87992796 -96295866 + L1M2b LINE L1 3275 4238 -2970 6142 30 8 0 chr4 87992796 87993509 -96295153 + L1PA3 LINE L1 5417 6155 0 189 0 0 0 chr4 87995861 87995882 -96292780 + (T)n Simple_repeat Simple_repeat 1 21 0 688 263 83 65 chr4 87996596 87996660 -96292002 - MLT1J1 LTR MaLR 0 446 385 1873 174 41 93 chr4 87996660 87997153 -96291509 - MLT1C LTR MaLR 0 467 1 688 263 83 65 chr4 87997153 87997346 -96291316 - MLT1J1 LTR MaLR -61 385 176 2328 88 3 0 chr4 87997346 87997651 -96291011 + AluSp SINE Alu 1 306 -7 688 263 83 65 chr4 87997651 87997802 -96290860 - MLT1J1 LTR MaLR -270 176 29 304 264 14 71 chr4 87997892 87998032 -96290630 - MER94 DNA DNA -2 132 1 1233 163 12 133 chr4 87998408 87998739 -96289923 - AluJb SINE Alu -11 291 1 1253 193 63 79 chr4 87998900 87999270 -96289392 - MLT1A1 LTR MaLR 0 457 2 26 0 0 0 chr4 87999587 87999613 -96289049 + AT_rich Low_complexity Low_complexity 1 26 0 193 194 16 16 chr4 88000165 88000227 -96288435 + GA-rich Low_complexity Low_complexity 3 64 0 186 159 45 23 chr4 88001176 88001217 -96287445 - L2 LINE L2 -17 3296 3255 239 281 39 124 chr4 88001217 88001370 -96287292 + MIR3 SINE MIR 3 142 -66 11298 182 39 23 chr4 88002143 88002716 -96285946 + L1MA4A LINE L1 2597 3159 -3144 6396 15 4 1 chr4 88002716 88003433 -96285229 + L1PA3 LINE L1 5417 6155 0 11298 182 39 23 chr4 88003433 88006335 -96282327 + L1MA4A LINE L1 3159 6127 -176 3498 114 48 0 chr4 88006339 88006883 -96281779 - L1PA13 LINE L1 -3 6160 5591 965 128 23 0 chr4 88006883 88007054 -96281608 + L1MA4 LINE L1 6119 6294 -6 1899 56 122 70 chr4 88007478 88007764 -96280898 - AluY SINE Alu -10 301 1 2284 126 14 22 chr4 88008281 88008647 -96280015 - THE1B LTR MaLR 0 364 2 461 316 11 17 chr4 88008822 88008996 -96279666 - MIR SINE MIR -21 241 69 295 359 41 46 chr4 88010090 88010285 -96278377 - MIR3 SINE MIR -9 199 6 1422 198 28 88 chr4 88010613 88011077 -96277585 - MER63B DNA MER1_type 0 436 1 6337 180 43 9 chr4 88011199 88012422 -96276240 + ERVL-D LTR ERVL 4493 5757 -7 1065 202 35 127 chr4 88012422 88012878 -96275784 + MLT2D LTR ERVL 1 414 0 374 162 15 0 chr4 88012996 88013064 -96275598 - ERVL LTR ERVL -693 5071 5003 22 80 0 0 chr4 88014605 88014655 -96274007 + AT_rich Low_complexity Low_complexity 1 50 0 11902 210 26 27 chr4 88015931 88017810 -96270852 + L1PA7 LINE L1 2131 4019 -2137 11890 92 3 1 chr4 88017810 88020250 -96268412 + L1PA7 LINE L1 3706 6152 -2 11902 210 26 27 chr4 88020250 88021924 -96266738 + L1PA7 LINE L1 4019 5692 -464 1065 275 34 42 chr4 88021947 88021998 -96266664 - L1ME LINE L1 -380 5784 5734 4522 103 7 10 chr4 88021998 88022680 -96265982 - L1PB2 LINE L1 0 6151 5472 1065 275 34 42 chr4 88022680 88022799 -96265863 - L1ME LINE L1 -430 5734 5616 979 214 91 5 chr4 88022799 88023019 -96265643 + MER8 DNA MER2_type 1 239 0 1065 275 34 42 chr4 88023019 88023216 -96265446 - L1ME LINE L1 -548 5616 5419 2346 82 0 10 chr4 88023216 88023520 -96265142 + AluY SINE Alu 7 307 -4 306 0 0 0 chr4 88023520 88023554 -96265108 + (TA)n Simple_repeat Simple_repeat 2 35 0 1065 275 34 42 chr4 88023554 88023590 -96265072 - L1ME LINE L1 -743 5421 5381 23 108 0 0 chr4 88023759 88023852 -96264810 + AT_rich Low_complexity Low_complexity 1 93 0 24 53 0 0 chr4 88023904 88023942 -96264720 + AT_rich Low_complexity Low_complexity 1 38 0 1304 178 107 4 chr4 88024196 88024347 -96264315 - AluJo SINE Alu -12 300 166 305 23 0 23 chr4 88024347 88024390 -96264272 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1304 178 107 4 chr4 88024390 88024508 -96264154 - AluJo SINE Alu -146 166 3 217 245 0 20 chr4 88024865 88024914 -96263748 - L3b LINE CR1 -8 1575 1528 6143 175 20 13 chr4 88024988 88026189 -96262473 - L1MA8 LINE L1 -967 5179 3971 4719 156 25 33 chr4 88026180 88026612 -96262050 + L1MA8 LINE L1 5163 5597 -694 * 1794 127 4 0 chr4 88026612 88026865 -96261797 - AluSx SINE Alu -12 300 47 4719 156 25 33 chr4 88026865 88027509 -96261153 + L1MA8 LINE L1 5597 6230 -61 215 130 0 22 chr4 88027517 88027563 -96261099 + (TA)n Simple_repeat Simple_repeat 2 46 0 285 178 14 27 chr4 88027574 88027647 -96261015 + L1MA8 LINE L1 6217 6288 -3 201 333 58 14 chr4 88027745 88027814 -96260848 - MIR3 SINE MIR -131 77 6 22 0 0 0 chr4 88028116 88028138 -96260524 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr4 88028405 88028438 -96260224 + AT_rich Low_complexity Low_complexity 1 33 0 1717 181 3 3 chr4 88028438 88028730 -96259932 - AluJb SINE Alu -15 297 6 22 56 0 0 chr4 88028822 88028858 -96259804 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr4 88029074 88029095 -96259567 + AT_rich Low_complexity Low_complexity 1 21 0 211 309 18 0 chr4 88029245 88029300 -96259362 + L2 LINE L2 3249 3304 -9 238 239 202 28 chr4 88029398 88029507 -96259155 - MIR SINE MIR -132 130 3 342 0 0 0 chr4 88030890 88030928 -96257734 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 2732 99 0 0 chr4 88031280 88031644 -96257018 - THE1B LTR MaLR 0 364 1 507 359 63 33 chr4 88031664 88032162 -96256500 - L2 LINE L2 -275 3038 2526 21 0 0 0 chr4 88032303 88032324 -96256338 + AT_rich Low_complexity Low_complexity 1 21 0 235 345 12 0 chr4 88032331 88032415 -96256247 + L1M2 LINE L1 10 94 -6755 11883 234 30 11 chr4 88033646 88034194 -96254468 + L1PA16 LINE L1 777 1313 -4910 1958 139 78 23 chr4 88034194 88034539 -96254123 - THE1B LTR MaLR 0 364 1 11883 234 30 11 chr4 88034539 88039278 -96249384 + L1PA16 LINE L1 1313 6218 -5 1466 284 56 31 chr4 88039685 88040330 -96248332 - MLT2F LTR ERVL -2 661 1 21 0 0 0 chr4 88040748 88040769 -96247893 + AT_rich Low_complexity Low_complexity 1 21 0 1667 288 82 26 chr4 88041849 88042889 -96245773 - L1ME3A LINE L1 -23 6147 5001 3833 112 26 0 chr4 88042889 88043454 -96245208 - LTR19B LTR ERV1 0 580 1 1667 288 82 26 chr4 88043454 88043803 -96244859 - L1ME3A LINE L1 -1169 5001 4673 22 0 0 0 chr4 88045067 88045089 -96243573 + AT_rich Low_complexity Low_complexity 1 22 0 2768 130 2 19 chr4 88045238 88045670 -96242992 - MER61B LTR ERV1 0 425 1 445 266 81 40 chr4 88045865 88046038 -96242624 - MIR SINE MIR -13 249 70 307 316 77 34 chr4 88046178 88046295 -96242367 + MLT1K LTR MaLR 111 232 -356 294 203 0 16 chr4 88046541 88046605 -96242057 + MLT1K LTR MaLR 523 585 -3 288 0 0 0 chr4 88046944 88046976 -96241686 + (TG)n Simple_repeat Simple_repeat 1 32 0 429 290 74 37 chr4 88047933 88048150 -96240512 - L2 LINE L2 0 3313 3089 254 366 0 57 chr4 88048248 88048371 -96240291 - MIR SINE MIR -67 141 26 10173 156 28 15 chr4 88049024 88050966 -96237696 + L1MA2 LINE L1 3379 5375 -929 2323 97 0 0 chr4 88050966 88051264 -96237398 + AluSg SINE Alu 2 299 -11 10173 156 28 15 chr4 88051264 88051976 -96236686 + L1MA2 LINE L1 5375 6076 -228 1555 106 4 8 chr4 88054110 88054345 -96234317 + L1MA2 LINE L1 6071 6304 0 22 0 0 0 chr4 88054358 88054380 -96234282 + AT_rich Low_complexity Low_complexity 1 22 0 910 257 83 90 chr4 88054748 88055204 -96233458 - LTR40b LTR ERVL -9 453 1 1557 88 60 0 chr4 88055586 88055803 -96232859 + MER30 DNA MER1_type 1 230 0 33 43 0 0 chr4 88055891 88055938 -96232724 + AT_rich Low_complexity Low_complexity 1 47 0 306 246 54 149 chr4 88056413 88056741 -96231921 - MLT1H LTR MaLR -136 413 136 1747 162 19 77 chr4 88056741 88057155 -96231507 - MLT1B LTR MaLR 0 390 1 306 246 54 149 chr4 88057155 88057270 -96231392 - MLT1H LTR MaLR -413 136 12 457 240 103 25 chr4 88057285 88057386 -96231276 - L1MDa LINE L1 -4550 1990 1898 1767 147 4 0 chr4 88057386 88057652 -96231010 - AluSx SINE Alu -45 267 1 457 240 103 25 chr4 88057652 88057858 -96230804 - L1MDa LINE L1 -4642 1898 1696 478 128 54 0 chr4 88058466 88058615 -96230047 + (TA)n Simple_repeat Simple_repeat 2 158 0 26 0 0 0 chr4 88058618 88058644 -96230018 + AT_rich Low_complexity Low_complexity 1 26 0 2040 84 10 27 chr4 88058644 88058940 -96229722 - AluSx SINE Alu -21 291 1 1768 160 24 103 chr4 88059374 88059829 -96228833 - MSTB1 LTR MaLR -13 419 1 2381 274 105 59 chr4 88060003 88061216 -96227446 + L2 LINE L2 1457 2724 -590 2130 236 61 17 chr4 88061216 88061694 -96226968 + MLT2B3 LTR ERVL 10 508 -46 435 87 0 0 chr4 88061695 88061764 -96226898 + (TAGA)n Simple_repeat Simple_repeat 1 69 0 486 50 12 25 chr4 88061765 88061845 -96226817 + (GAAA)n Simple_repeat Simple_repeat 3 81 0 541 358 57 16 chr4 88061930 88062176 -96226486 + L2 LINE L2 2825 3080 -233 * 812 319 44 7 chr4 88062170 88062443 -96226219 + L2 LINE L2 2423 2705 -609 206 170 21 0 chr4 88062445 88062492 -96226170 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 620 260 77 86 chr4 88062536 88062874 -96225788 - MLT1B LTR MaLR -53 337 3 356 244 63 24 chr4 88062902 88063029 -96225633 + L2 LINE L2 3158 3289 -24 353 336 119 31 chr4 88063038 88063356 -96225306 + L1ME4a LINE L1 5539 5884 -237 22 0 0 0 chr4 88063463 88063485 -96225177 + AT_rich Low_complexity Low_complexity 1 22 0 400 257 113 69 chr4 88064147 88064555 -96224107 + L1ME4a LINE L1 4488 4913 -1233 632 315 90 25 chr4 88064959 88065280 -96223382 + LTR16A LTR ERVL 16 357 -93 319 243 44 132 chr4 88065312 88065584 -96223078 + L1ME4a LINE L1 5637 5884 -237 1517 161 45 14 chr4 88065591 88065882 -96222780 + L1MC1 LINE L1 6026 6325 -8 33 25 0 0 chr4 88066050 88066090 -96222572 + AT_rich Low_complexity Low_complexity 1 40 0 303 71 0 0 chr4 88066302 88066344 -96222318 + (TA)n Simple_repeat Simple_repeat 1 42 0 213 39 0 0 chr4 88066343 88066369 -96222293 + (CA)n Simple_repeat Simple_repeat 2 27 0 * 2231 257 80 21 chr4 88066610 88068781 -96219881 - L1MD3 LINE L1 -12 7983 5582 1031 112 19 25 chr4 88068780 88068941 -96219721 - L1PA13 LINE L1 -36 6127 5968 * 639 249 42 59 chr4 88069050 88069287 -96219375 - L1MD3 LINE L1 -569 5597 5365 364 130 0 0 chr4 88069288 88069342 -96219320 - THE1C LTR MaLR 0 364 311 386 103 31 21 chr4 88069343 88069440 -96219222 + T-rich Low_complexity Low_complexity 2 99 0 26808 30 3 0 chr4 88069444 88073464 -96215198 - L1PA3 LINE L1 -4 6151 2121 2086 94 43 27 chr4 88073464 88073792 -96214870 - THE1C LTR MaLR -42 333 1 839 271 76 28 chr4 88073793 88074255 -96214407 - L1MD3 LINE L1 -788 5358 4896 496 207 63 9 chr4 88074255 88074366 -96214296 + LTR40a LTR ERVL 403 519 0 669 317 96 35 chr4 88074368 88074760 -96213902 - L1MCc LINE L1 -5150 1273 844 3520 142 26 81 chr4 88074760 88075491 -96213171 - LTR8 LTR ERV1 0 691 1 669 317 96 35 chr4 88075491 88075590 -96213072 - L1MCc LINE L1 -5579 844 752 262 312 0 0 chr4 88079006 88079099 -96209563 + MER94 DNA DNA 7 99 -35 252 341 22 11 chr4 88079166 88079257 -96209405 - MIR SINE MIR -124 138 47 24 0 0 0 chr4 88079278 88079302 -96209360 + AT_rich Low_complexity Low_complexity 1 24 0 266 168 67 101 chr4 88079386 88079505 -96209157 + L1ME4a LINE L1 5974 6088 -33 23 33 0 0 chr4 88079574 88079604 -96209058 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 88079810 88079832 -96208830 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr4 88079915 88079948 -96208714 + AT_rich Low_complexity Low_complexity 1 33 0 271 258 21 11 chr4 88080548 88080641 -96208021 + MIR SINE MIR 113 206 -56 23 0 0 0 chr4 88080744 88080767 -96207895 + AT_rich Low_complexity Low_complexity 1 23 0 3222 163 25 2 chr4 88080903 88081456 -96207206 + L1PA6 LINE L1 11 576 -5570 22510 65 5 1 chr4 88081456 88085249 -96203413 + L1PA6 LINE L1 2318 6148 -6 210 250 0 0 chr4 88085462 88085518 -96203144 + GA-rich Low_complexity Low_complexity 1 56 0 4843 45 0 2 chr4 88087786 88088364 -96200298 + MER11D LTR ERVK 1 577 -320 1328 189 75 43 chr4 88088534 88088883 -96199779 + MLT1A1 LTR MaLR 1 360 -5 230 200 0 0 chr4 88089059 88089104 -96199558 - L1MA9 LINE L1 -268 6044 6000 1515 140 14 11 chr4 88089104 88089383 -96199279 + L1MA9 LINE L1 6028 6307 -5 378 0 0 0 chr4 88090614 88090656 -96198006 + (TA)n Simple_repeat Simple_repeat 2 43 0 23 0 0 0 chr4 88092770 88092793 -96195869 + AT_rich Low_complexity Low_complexity 1 23 0 2228 113 3 0 chr4 88093223 88093533 -96195129 - AluSx SINE Alu 0 312 2 23 0 0 0 chr4 88095055 88095078 -96193584 + AT_rich Low_complexity Low_complexity 1 23 0 259 337 109 0 chr4 88095082 88095174 -96193488 - L2 LINE L2 -13 3300 3199 238 260 71 47 chr4 88095214 88095341 -96193321 + MIR SINE MIR 118 247 -15 2171 129 0 0 chr4 88096186 88096488 -96192174 - AluSg SINE Alu -8 302 1 30 45 0 0 chr4 88096586 88096630 -96192032 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr4 88097519 88097548 -96191114 + AT_rich Low_complexity Low_complexity 1 29 0 233 169 46 15 chr4 88097611 88097676 -96190986 + (TA)n Simple_repeat Simple_repeat 1 67 0 3054 140 6 10 chr4 88098292 88098792 -96189870 + L1PA16 LINE L1 5668 6165 -1 572 178 20 46 chr4 88100843 88100995 -96187667 - LTR37B LTR ERV1 -8 460 313 626 198 60 6 chr4 88101126 88101293 -96187369 + L1MB1 LINE L1 6013 6188 -1 183 289 0 0 chr4 88101441 88101486 -96187176 + MER5A DNA MER1_type 143 187 -2 828 272 124 60 chr4 88101886 88102400 -96186262 + MLT1K LTR MaLR 15 561 -27 328 272 212 21 chr4 88103947 88104219 -96184443 - L1M4 LINE L1 -585 5589 5261 509 291 109 33 chr4 88105326 88105536 -96183126 - MIR SINE MIR -34 228 3 210 37 0 0 chr4 88107219 88107246 -96181416 + (T)n Simple_repeat Simple_repeat 1 27 0 278 314 59 0 chr4 88108231 88108333 -96180329 - L2 LINE L2 -5 3308 3201 183 253 212 40 chr4 88108336 88108435 -96180227 + L2 LINE L2 1773 1888 -1426 3014 153 94 0 chr4 88108474 88109025 -96179637 + LTR26 LTR ERV1 1 603 0 1081 257 29 72 chr4 88109074 88109374 -96179288 - MLT1C LTR MaLR 0 467 194 1909 165 3 0 chr4 88109374 88109683 -96178979 + AluSx SINE Alu 1 310 -2 1081 257 29 72 chr4 88109683 88109868 -96178794 - MLT1C LTR MaLR -273 194 3 356 0 23 0 chr4 88110575 88110619 -96178043 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 477 175 10 48 chr4 88110714 88110817 -96177845 - MER20 DNA MER1_type -120 99 1 516 259 121 35 chr4 88110826 88111058 -96177604 - MIR SINE MIR 0 262 11 240 343 98 83 chr4 88111430 88111826 -96176836 + L2 LINE L2 2870 3271 -1 194 321 36 73 chr4 88112295 88112432 -96176230 + MIR3 SINE MIR 14 145 -63 201 74 0 0 chr4 88113112 88113139 -96175523 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 1769 244 84 54 chr4 88113954 88114800 -96173862 - L1ME3A LINE L1 -34 6136 5266 829 244 53 5 chr4 88114800 88115009 -96173653 + MER20 DNA MER1_type 1 219 0 22 56 0 0 chr4 88115024 88115060 -96173602 + AT_rich Low_complexity Low_complexity 1 36 0 238 118 0 0 chr4 88115233 88115267 -96173395 + Charlie5 DNA MER1_type 2551 2584 -28 832 271 84 66 chr4 88115267 88115620 -96173042 - L1ME3A LINE L1 -1103 5043 4698 1822 166 3 10 chr4 88115620 88115963 -96172699 - AluJb SINE Alu 0 341 1 832 271 84 66 chr4 88115963 88116952 -96171710 - L1ME3A LINE L1 -1448 4698 3675 4731 212 42 16 chr4 88116973 88117547 -96171115 - L1 LINE L1 -1909 4939 4382 417 123 96 0 chr4 88117547 88117620 -96171042 - MADE1 DNA Mariner 0 80 1 4731 212 42 16 chr4 88117620 88118244 -96170418 - L1 LINE L1 -2466 4382 3709 1001 216 24 68 chr4 88118340 88118648 -96170014 + LTR29 LTR ERV1 137 481 -163 1677 206 60 29 chr4 88118648 88119095 -96169567 - L1 LINE L1 -4338 2511 2051 189 0 0 0 chr4 88119097 88119118 -96169544 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 12162 126 15 3 chr4 88119118 88121881 -96166781 - L1PA10 LINE L1 -21 6147 3358 2072 131 60 20 chr4 88121884 88122234 -96166428 - THE1B LTR MaLR 0 364 1 7256 118 3 0 chr4 88122234 88123245 -96165417 - THE1B-int LTR MaLR 0 1580 567 5174 226 28 16 chr4 88123241 88124525 -96164137 - L1P3 LINE L1 -4735 1140 8 * 28 0 0 0 chr4 88124526 88124554 -96164108 + AT_rich Low_complexity Low_complexity 1 28 0 1882 258 55 56 chr4 88124590 88126585 -96162077 - L1 LINE L1 -4787 2062 10 36 23 0 0 chr4 88126585 88126628 -96162034 + AT_rich Low_complexity Low_complexity 1 43 0 903 245 67 46 chr4 88126693 88127064 -96161598 - L1MEc LINE L1 -4367 2029 1651 2088 173 64 7 chr4 88127357 88127762 -96160900 - MSTA LTR MaLR 0 428 1 5587 52 0 0 chr4 88128233 88128921 -96159741 - L1PA6 LINE L1 -4 6150 5463 23 0 0 0 chr4 88129555 88129578 -96159084 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr4 88129906 88129937 -96158725 + AT_rich Low_complexity Low_complexity 1 31 0 382 343 22 8 chr4 88130002 88130136 -96158526 + L2 LINE L2 3137 3272 0 198 103 0 0 chr4 88133980 88134009 -96154653 + (ATG)n Simple_repeat Simple_repeat 3 31 0 351 290 72 7 chr4 88134819 88134957 -96153705 - MLT1L LTR MaLR -136 479 333 254 279 80 55 chr4 88135041 88135242 -96153420 - MLT1L LTR MaLR -409 206 1 1225 228 67 42 chr4 88135550 88135997 -96152665 + LTR37B LTR ERV1 11 468 0 22 70 0 0 chr4 88136269 88136312 -96152350 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr4 88137186 88137208 -96151454 + AT_rich Low_complexity Low_complexity 1 22 0 378 263 32 0 chr4 88138331 88138426 -96150236 + MER5A DNA MER1_type 9 106 -83 428 295 37 55 chr4 88138659 88138930 -96149732 - L2 LINE L2 0 3313 3048 330 325 95 30 chr4 88139426 88139626 -96149036 - LTR16A LTR ERVL -1 449 237 775 300 78 43 chr4 88139727 88140074 -96148588 - LTR16B LTR ERVL 0 464 106 3465 56 5 5 chr4 88140550 88140998 -96147664 - LTR7 LTR ERV1 -2 448 1 2523 79 45 13 chr4 88140998 88141378 -96147284 - HERVH LTR ERV1 0 7713 7322 1399 124 18 5 chr4 88141376 88141593 -96147069 - HERVH LTR ERV1 -1894 5819 5600 * 4109 154 9 1 chr4 88141594 88142251 -96146411 - HERVH LTR ERV1 -2564 5149 4488 3343 111 4 8 chr4 88142253 88142757 -96145905 - HERVH LTR ERV1 -3720 3993 3492 855 123 22 0 chr4 88142757 88142895 -96145767 - HERVH LTR ERV1 -4433 3280 3140 * 15812 107 22 22 chr4 88142874 88145430 -96143232 - HERVH LTR ERV1 -4718 2995 483 5001 125 40 0 chr4 88145447 88146254 -96142408 - HERVH LTR ERV1 -6874 839 1 3381 71 0 7 chr4 88146256 88146707 -96141955 - LTR7 LTR ERV1 -2 448 1 278 360 85 24 chr4 88146859 88147070 -96141592 + LTR16C LTR ERVL 266 489 -2 23 33 0 0 chr4 88148249 88148279 -96140383 + AT_rich Low_complexity Low_complexity 1 30 0 2134 132 3 3 chr4 88149250 88149560 -96139102 - AluSg SINE Alu 0 310 1 315 241 152 0 chr4 88150258 88150337 -96138325 + L2 LINE L2 3189 3279 -34 2272 81 0 13 chr4 88150398 88150696 -96137966 + AluSc SINE Alu 1 294 -15 597 236 45 17 chr4 88151560 88151738 -96136924 + L1ME3A LINE L1 5762 5944 -226 * 2395 300 19 28 chr4 88151736 88152479 -96136183 + L1M3b LINE L1 10 745 -5536 361 271 94 68 chr4 88152758 88152950 -96135712 - MIR SINE MIR 0 262 66 2256 123 3 0 chr4 88153462 88153772 -96134890 - AluSx SINE Alu -1 311 1 25 51 0 0 chr4 88154237 88154276 -96134386 + AT_rich Low_complexity Low_complexity 1 39 0 5466 162 33 25 chr4 88154912 88156318 -96132344 - L1MA5 LINE L1 -2 7000 5607 2151 136 16 27 chr4 88156318 88156685 -96131977 - THE1B LTR MaLR -1 363 1 9619 104 57 45 chr4 88156685 88158247 -96130415 - THE1B-int LTR MaLR 0 1580 1 1720 169 66 26 chr4 88158247 88158597 -96130065 - THE1B LTR MaLR 0 364 1 5466 162 33 25 chr4 88158597 88158970 -96129692 - L1MA5 LINE L1 -1394 5608 5192 2783 189 75 56 chr4 88158980 88159877 -96128785 - L1MA5 LINE L1 -2336 4512 3599 1393 228 102 25 chr4 88159867 88160036 -96128626 - L1MA5 LINE L1 -5099 1750 1596 * 2066 144 21 37 chr4 88160036 88160417 -96128245 + THE1C LTR MaLR 1 375 0 1393 228 102 25 chr4 88160417 88160647 -96128015 - L1MA5 LINE L1 -5253 1596 1320 2072 59 66 66 chr4 88162006 88162311 -96126351 + AluY SINE Alu 1 305 -6 253 0 54 0 chr4 88162312 88162349 -96126313 + (TA)n Simple_repeat Simple_repeat 1 39 0 30 45 0 0 chr4 88162673 88162717 -96125945 + AT_rich Low_complexity Low_complexity 1 44 0 2529 282 71 67 chr4 88163352 88163576 -96125086 - L1MCc LINE L1 -4887 1536 1314 7287 37 7 0 chr4 88163576 88164880 -96123782 - L1PA4 LINE L1 -2 6153 4836 2529 282 71 67 chr4 88164880 88166293 -96122369 - L1MCc LINE L1 -5109 1314 19 351 314 19 13 chr4 88166588 88166744 -96121918 + MER103 DNA DNA 9 165 -1 24 0 0 0 chr4 88167350 88167374 -96121288 + AT_rich Low_complexity Low_complexity 1 24 0 439 179 15 30 chr4 88168853 88168987 -96119675 + GA-rich Low_complexity Low_complexity 2 133 0 34 24 0 0 chr4 88170429 88170470 -96118192 + AT_rich Low_complexity Low_complexity 1 41 0 373 275 90 30 chr4 88170694 88170861 -96117801 - MER5B DNA MER1_type 0 178 2 191 203 0 141 chr4 88170989 88171053 -96117609 + L3b LINE CR1 1526 1580 -3 199 280 19 75 chr4 88173557 88173664 -96114998 + L2 LINE L2 3212 3312 -1 224 233 29 29 chr4 88173932 88174035 -96114627 + (CATATA)n Simple_repeat Simple_repeat 2 104 0 1814 142 63 116 chr4 88174048 88174253 -96114409 - Tigger2a DNA MER2_type -2274 434 220 2089 118 0 0 chr4 88174253 88174540 -96114122 - AluSq SINE Alu -26 287 1 1814 142 63 116 chr4 88174540 88174791 -96113871 - Tigger2a DNA MER2_type -2488 220 2 27 49 0 0 chr4 88174791 88174832 -96113830 + AT_rich Low_complexity Low_complexity 1 41 0 759 290 175 18 chr4 88175117 88175552 -96113110 - MLT1G1 LTR MaLR 0 595 93 1795 133 7 10 chr4 88175560 88175854 -96112808 - L1PB2 LINE L1 -5 6146 5854 2629 103 39 0 chr4 88175854 88176242 -96112420 - L1PB2 LINE L1 -225 5926 5524 1563 174 37 7 chr4 88177028 88177322 -96111340 - AluJb SINE Alu -9 303 1 220 182 0 36 chr4 88177557 88177612 -96111050 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 22 56 0 0 chr4 88178502 88178538 -96110124 + AT_rich Low_complexity Low_complexity 1 36 0 1397 205 7 37 chr4 88178632 88178930 -96109732 - AluJo SINE Alu -23 289 1 46 33 0 0 chr4 88180203 88180263 -96108399 + AT_rich Low_complexity Low_complexity 1 60 0 331 333 35 29 chr4 88180439 88180610 -96108052 - L1ME3A LINE L1 0 6170 5999 265 289 36 48 chr4 88181051 88181217 -96107445 - HAL1b LINE L1 -1075 273 110 3777 159 13 7 chr4 88181323 88182010 -96106652 - L1MB8 LINE L1 0 6178 5488 5915 140 29 4 chr4 88182030 88183001 -96105661 - L1MA5 LINE L1 -1 6299 5296 266 0 29 0 chr4 88183001 88183035 -96105627 + (TTA)n Simple_repeat Simple_repeat 3 37 0 5915 140 29 4 chr4 88183035 88183222 -96105440 - L1MA5 LINE L1 -1004 5296 5115 1036 191 11 48 chr4 88183202 88183475 -96105187 - L1MB8 LINE L1 -659 5521 5259 * 1599 283 120 86 chr4 88183490 88185142 -96103520 - L1M4 LINE L1 -4833 1709 2 21 36 0 0 chr4 88186178 88186206 -96102456 + AT_rich Low_complexity Low_complexity 1 28 0 204 40 0 0 chr4 88186730 88186755 -96101907 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 21 0 0 0 chr4 88186886 88186907 -96101755 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr4 88187082 88187110 -96101552 + AT_rich Low_complexity Low_complexity 1 28 0 321 297 5 38 chr4 88187234 88187419 -96101243 + (TA)n Simple_repeat Simple_repeat 2 180 0 22 35 0 0 chr4 88188114 88188143 -96100519 + AT_rich Low_complexity Low_complexity 1 29 0 22 80 0 0 chr4 88188482 88188532 -96100130 + AT_rich Low_complexity Low_complexity 1 50 0 21 36 0 0 chr4 88189051 88189079 -96099583 + AT_rich Low_complexity Low_complexity 1 28 0 231 36 0 0 chr4 88191390 88191418 -96097244 + (CCTCG)n Simple_repeat Simple_repeat 5 32 0 223 191 24 0 chr4 88191886 88191928 -96096734 + (CA)n Simple_repeat Simple_repeat 1 43 0 21 0 0 0 chr4 88192896 88192917 -96095745 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 88193590 88193611 -96095051 + AT_rich Low_complexity Low_complexity 1 21 0 1353 327 119 31 chr4 88197653 88198620 -96090042 - L2 LINE L2 0 3313 2115 4061 138 22 9 chr4 88198620 88198955 -96089707 + L1PB1 LINE L1 5452 5781 -370 372 43 0 0 chr4 88198955 88199001 -96089661 + (TG)n Simple_repeat Simple_repeat 1 46 0 4061 138 22 9 chr4 88199001 88199353 -96089309 + L1PB1 LINE L1 5781 6148 -3 1353 327 119 31 chr4 88199353 88199822 -96088840 - L2 LINE L2 -1198 2115 1689 1477 164 109 21 chr4 88200395 88200724 -96087938 + MER46B DNA MER2_type 4 236 0 2369 89 3 6 chr4 88201562 88201876 -96086786 + AluSq SINE Alu 1 313 0 32 26 0 0 chr4 88202808 88202847 -96085815 + AT_rich Low_complexity Low_complexity 1 39 0 225 94 0 0 chr4 88204151 88204183 -96084479 + (TA)n Simple_repeat Simple_repeat 2 33 0 1406 158 158 0 chr4 88204381 88204646 -96084016 - AluSx SINE Alu -5 307 1 2112 128 0 10 chr4 88206347 88206651 -96082011 - AluSx SINE Alu -11 301 1 23 33 0 0 chr4 88206835 88206865 -96081797 + AT_rich Low_complexity Low_complexity 1 30 0 300 91 0 0 chr4 88209480 88209524 -96079138 + (CA)n Simple_repeat Simple_repeat 2 45 0 242 290 43 87 chr4 88210038 88210245 -96078417 + MIR SINE MIR 59 256 -6 414 337 30 12 chr4 88211478 88211647 -96077015 - MIR SINE MIR 0 262 91 180 0 0 0 chr4 88212226 88212246 -96076416 + (TG)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr4 88212552 88212575 -96076087 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr4 88213820 88213857 -96074805 + AT_rich Low_complexity Low_complexity 1 37 0 188 289 11 100 chr4 88214512 88214602 -96074060 - L2 LINE L2 -55 3217 3136 279 162 61 0 chr4 88214779 88214878 -96073784 + GA-rich Low_complexity Low_complexity 2 106 0 258 356 59 15 chr4 88214878 88215013 -96073649 - L2 LINE L2 -384 2930 2790 21 0 0 0 chr4 88215590 88215611 -96073051 + AT_rich Low_complexity Low_complexity 1 21 0 237 293 26 52 chr4 88215823 88215939 -96072723 - L2 LINE L2 -4 3309 3197 1461 216 91 6 chr4 88216974 88217336 -96071326 - MSTD LTR MaLR -2 394 2 4172 241 109 49 chr4 88217337 88218588 -96070074 - MSTD-int LTR MaLR 0 1735 409 1219 235 26 11 chr4 88218618 88218890 -96069772 - AluJo SINE Alu -36 276 1 2033 218 0 0 chr4 88218891 88219290 -96069372 - MSTD-int LTR MaLR -1309 426 28 1636 218 18 18 chr4 88219290 88219630 -96069032 - MSTD LTR MaLR -56 340 1 406 257 73 62 chr4 88219682 88219861 -96068801 + MLT1K LTR MaLR 374 554 -34 463 341 62 5 chr4 88220246 88220457 -96068205 + MIR SINE MIR 40 262 0 511 300 90 105 chr4 88221173 88221424 -96067238 + L2 LINE L2 2311 2564 -749 275 111 0 0 chr4 88221424 88221460 -96067202 - U2 snRNA snRNA -152 36 1 511 300 90 105 chr4 88221460 88221913 -96066749 + L2 LINE L2 2564 3048 -265 250 143 0 0 chr4 88222403 88222438 -96066224 - U2 snRNA snRNA -153 35 1 342 358 46 42 chr4 88222463 88222723 -96065939 + L2 LINE L2 2578 2838 -476 189 0 0 0 chr4 88222933 88222954 -96065708 + (T)n Simple_repeat Simple_repeat 1 21 0 259 325 36 12 chr4 88223033 88223116 -96065546 + L2 LINE L2 3139 3223 -49 315 254 60 45 chr4 88223180 88223314 -96065348 - L1ME LINE L1 -287 5834 5699 598 205 16 0 chr4 88223344 88223471 -96065191 - LTR16A1 LTR ERVL -5 452 324 1071 156 84 47 chr4 88223471 88223775 -96064887 - THE1C LTR MaLR 0 428 1 351 320 80 0 chr4 88223775 88223925 -96064737 - LTR16A1 LTR ERVL -129 328 167 374 316 147 9 chr4 88225448 88225666 -96062996 - MIR SINE MIR -12 250 3 27 49 0 0 chr4 88226062 88226103 -96062559 + AT_rich Low_complexity Low_complexity 1 41 0 218 339 113 41 chr4 88226432 88226653 -96062009 + L2 LINE L2 2848 3084 -188 2220 58 34 10 chr4 88227617 88227908 -96060754 + AluY SINE Alu 1 298 -13 362 242 133 8 chr4 88228004 88228124 -96060538 - L2 LINE L2 0 3313 3179 257 296 69 97 chr4 88229013 88229260 -96059402 + MIR SINE MIR 19 258 -4 305 386 109 20 chr4 88230136 88230439 -96058223 - L2 LINE L2 -14 3258 2929 323 335 39 13 chr4 88230729 88230884 -96057778 - MIR SINE MIR -14 248 90 752 300 58 22 chr4 88231727 88232144 -96056518 - MARNA DNA Mariner -9 577 146 21 0 0 0 chr4 88232177 88232198 -96056464 + AT_rich Low_complexity Low_complexity 1 21 0 262 277 0 98 chr4 88232790 88232902 -96055760 + MER5A DNA MER1_type 9 109 -80 1708 153 0 4 chr4 88233511 88233779 -96054883 - AluSx SINE Alu -12 300 34 3415 185 63 8 chr4 88234699 88235169 -96053493 + L1MA7 LINE L1 5508 6035 -256 273 29 0 0 chr4 88235169 88235203 -96053459 + (TGG)n Simple_repeat Simple_repeat 2 35 0 3415 185 63 8 chr4 88235203 88235473 -96053189 + L1MA7 LINE L1 6035 6289 -2 517 263 155 30 chr4 88235494 88235726 -96052936 + MIR SINE MIR 2 262 0 205 260 27 27 chr4 88235843 88235916 -96052746 - MIR SINE MIR -122 140 68 380 220 113 69 chr4 88236062 88236221 -96052441 + MIR SINE MIR 97 262 0 232 303 55 37 chr4 88236230 88236339 -96052323 + MARNA DNA Mariner 102 212 -374 959 207 33 25 chr4 88236345 88236620 -96052042 + L1 LINE L1 4970 5246 -900 650 231 74 20 chr4 88236647 88236989 -96051673 - L1MC4 LINE L1 -384 7658 7082 342 252 141 7 chr4 88237338 88237473 -96051189 - L2 LINE L2 -517 2797 2645 258 283 167 0 chr4 88237626 88237746 -96050916 - L2 LINE L2 -2710 604 465 21 0 0 0 chr4 88238068 88238089 -96050573 + AT_rich Low_complexity Low_complexity 1 21 0 305 312 21 0 chr4 88238326 88238419 -96050243 + L3 LINE CR1 1478 1572 -5 23 33 0 0 chr4 88238838 88238868 -96049794 + AT_rich Low_complexity Low_complexity 1 30 0 12858 148 16 68 chr4 88239650 88240061 -96048601 + Tigger1 DNA MER2_type 1 432 -1986 1451 104 0 5 chr4 88240061 88240262 -96048400 + AluSg SINE Alu 1 200 -110 12858 148 16 68 chr4 88240262 88242399 -96046263 + Tigger1 DNA MER2_type 432 2418 0 21 0 0 0 chr4 88242551 88242572 -96046090 + AT_rich Low_complexity Low_complexity 1 21 0 2271 228 64 3 chr4 88242624 88243203 -96045459 - MER90 LTR ERV1 0 614 1 222 340 0 0 chr4 88243305 88243355 -96045307 + L2 LINE L2 3134 3183 -89 809 290 16 28 chr4 88243410 88243665 -96044997 - MIR SINE MIR 0 262 11 2702 139 19 43 chr4 88243697 88244324 -96044338 + MER4E LTR ERV1 1 766 0 21 57 0 0 chr4 88244869 88244904 -96043758 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr4 88245787 88245811 -96042851 + AT_rich Low_complexity Low_complexity 1 24 0 1339 122 0 5 chr4 88245812 88246008 -96042654 + AluY SINE Alu 94 288 -23 9342 100 6 0 chr4 88246012 88247278 -96041384 - THE1B-int LTR MaLR -307 1273 1 1934 144 69 26 chr4 88247281 88247628 -96041034 - THE1B LTR MaLR -2 362 1 294 268 71 18 chr4 88247739 88247851 -96040811 - MIR3 SINE MIR -2 206 89 21 0 0 0 chr4 88248551 88248572 -96040090 + AT_rich Low_complexity Low_complexity 1 21 0 29 90 0 0 chr4 88248622 88248700 -96039962 + AT_rich Low_complexity Low_complexity 1 78 0 186 289 227 0 chr4 88250039 88250136 -96038526 + MIR SINE MIR 73 191 -71 502 278 68 12 chr4 88250774 88250936 -96037726 - MIR SINE MIR -27 235 65 2531 131 38 21 chr4 88251265 88251686 -96036976 - MSTA LTR MaLR 0 428 1 207 246 0 0 chr4 88252070 88252127 -96036535 + CT-rich Low_complexity Low_complexity 1 57 0 291 122 0 0 chr4 88252531 88252580 -96036082 + (TG)n Simple_repeat Simple_repeat 1 49 0 308 283 10 50 chr4 88252599 88252698 -96035964 + L2 LINE L2 3190 3284 -29 695 31 98 0 chr4 88252848 88253109 -96035553 + (TA)n Simple_repeat Simple_repeat 1 286 0 22 0 0 0 chr4 88253448 88253470 -96035192 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr4 88253616 88253653 -96035009 + AT_rich Low_complexity Low_complexity 1 37 0 27 0 0 0 chr4 88253834 88253861 -96034801 + AT_rich Low_complexity Low_complexity 1 27 0 33 0 0 0 chr4 88254030 88254063 -96034599 + AT_rich Low_complexity Low_complexity 1 33 0 225 186 17 0 chr4 88254271 88254330 -96034332 + L1MC4 LINE L1 6644 6703 -1339 284 311 61 20 chr4 88257319 88257467 -96031195 - MER103 DNA DNA -1 165 12 878 316 40 67 chr4 88258053 88258534 -96030128 + L3 LINE CR1 425 892 -685 257 304 87 22 chr4 88258576 88258760 -96029902 - MIR SINE MIR -1 261 66 542 337 95 22 chr4 88258815 88259174 -96029488 + L3 LINE CR1 997 1381 -196 586 320 30 10 chr4 88259183 88259383 -96029279 + L2 LINE L2 3109 3312 -1 2165 122 3 0 chr4 88311715 88312019 -95976643 + AluSx SINE Alu 1 305 -7 21 36 0 0 chr4 88312484 88312512 -95976150 + AT_rich Low_complexity Low_complexity 1 28 0 247 70 70 0 chr4 88313682 88313725 -95974937 + MADE1 DNA Mariner 1 46 -34 21 0 0 0 chr4 88313862 88313883 -95974779 + AT_rich Low_complexity Low_complexity 1 21 0 26 64 0 0 chr4 88314550 88314597 -95974065 + AT_rich Low_complexity Low_complexity 1 47 0 23 0 0 0 chr4 88315034 88315057 -95973605 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr4 88315217 88315238 -95973424 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 289 313 39 31 chr4 88315549 88315677 -95972985 + MER94 DNA DNA 2 130 -4 21 36 0 0 chr4 88315734 88315762 -95972900 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 88316323 88316345 -95972317 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 88317663 88317688 -95970974 + AT_rich Low_complexity Low_complexity 1 25 0 2098 135 0 6 chr4 88318471 88318783 -95969879 - AluSx SINE Alu -2 310 1 191 222 0 44 chr4 88320198 88320243 -95968419 - MIR SINE MIR -11 251 209 2070 130 0 0 chr4 88321574 88321867 -95966795 - AluSg SINE Alu 0 310 18 225 337 29 41 chr4 88325863 88326035 -95962627 + L2 LINE L2 1721 1890 -1424 243 330 54 61 chr4 88326108 88326284 -95962378 + L2 LINE L2 2241 2416 -898 270 56 0 0 chr4 88326284 88326320 -95962342 + (TG)n Simple_repeat Simple_repeat 1 36 0 243 330 54 61 chr4 88326320 88326422 -95962240 + L2 LINE L2 2416 2517 -797 29 28 0 0 chr4 88326422 88326458 -95962204 + AT_rich Low_complexity Low_complexity 1 36 0 226 340 21 21 chr4 88326984 88327078 -95961584 + L2 LINE L2 3174 3267 -5 699 315 157 0 chr4 88327336 88327808 -95960854 - L2 LINE L2 -238 3075 2524 734 146 0 0 chr4 88327824 88327934 -95960728 + FRAM SINE Alu 36 145 -31 183 114 0 0 chr4 88327940 88327975 -95960687 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 299 327 36 0 chr4 88327978 88328088 -95960574 - L2 LINE L2 -808 2506 2393 361 267 138 0 chr4 88328106 88328222 -95960440 + L2 LINE L2 3162 3293 -20 1979 330 81 26 chr4 88328296 88329438 -95959224 - L2 LINE L2 -1 3312 2086 1350 201 37 0 chr4 88329438 88329737 -95958925 + L1MA6 LINE L1 5991 6300 0 1979 330 81 26 chr4 88329737 88329869 -95958793 - L2 LINE L2 -1227 2086 1963 428 273 23 45 chr4 88329876 88329899 -95958763 + MER94 DNA DNA 3 25 -109 2547 172 5 2 chr4 88329899 88330324 -95958338 - MSTB LTR MaLR 0 426 1 428 273 23 45 chr4 88330324 88330432 -95958230 + MER94 DNA DNA 25 131 -3 477 315 116 0 chr4 88330435 88330651 -95958011 - L2 LINE L2 -1353 1961 1721 2063 179 18 126 chr4 88330664 88331268 -95957394 - L1MB3 LINE L1 -3 6180 5642 392 311 21 37 chr4 88332463 88332653 -95956009 + L2 LINE L2 3123 3309 -4 25 0 0 0 chr4 88335774 88335799 -95952863 + AT_rich Low_complexity Low_complexity 1 25 0 201 254 16 16 chr4 88336144 88336207 -95952455 + (TTCA)n Simple_repeat Simple_repeat 4 66 0 189 94 0 0 chr4 88336767 88336799 -95951863 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 267 302 0 0 chr4 88336978 88337041 -95951621 + polypyrimidine Low_complexity Low_complexity 2 64 0 1265 168 86 8 chr4 88337316 88337572 -95951090 + L1MB2 LINE L1 5894 6169 -2 23 33 0 0 chr4 88338010 88338040 -95950622 + AT_rich Low_complexity Low_complexity 1 30 0 1390 212 105 59 chr4 88338410 88338929 -95949733 - MLT2B2 LTR ERVL -12 508 1 3265 210 64 63 chr4 88338929 88339821 -95948841 - HERVL-B2 LTR ERVL 0 5654 4762 22 56 0 0 chr4 88339956 88339992 -95948670 + AT_rich Low_complexity Low_complexity 1 36 0 1743 331 36 26 chr4 88340753 88341757 -95946905 - L2 LINE L2 -1 3312 2283 350 340 128 47 chr4 88341785 88342757 -95945905 - L2 LINE L2 -557 2757 1708 1073 227 65 93 chr4 88343103 88343566 -95945096 - MLT1D LTR MaLR 0 505 56 229 239 0 0 chr4 88343622 88343668 -95944994 - MLT1D LTR MaLR -436 69 24 464 366 77 38 chr4 88343994 88344732 -95943930 - L2 LINE L2 -2345 969 203 285 185 0 0 chr4 88344981 88345046 -95943616 + GA-rich Low_complexity Low_complexity 3 67 0 2053 128 3 3 chr4 88345206 88345510 -95943152 - AluSq SINE Alu -9 304 1 246 105 0 0 chr4 88345591 88345629 -95943033 + (CA)n Simple_repeat Simple_repeat 1 38 0 225 263 0 0 chr4 88345652 88345709 -95942953 + Tigger5 DNA MER2_type 23 79 -2244 302 186 17 17 chr4 88345711 88345770 -95942892 - Tigger5 DNA MER2_type -6 2317 2259 271 217 0 0 chr4 88345774 88345820 -95942842 + Tigger5 DNA MER2_type 2277 2322 -1 200 98 0 24 chr4 88347142 88347183 -95941479 + (TA)n Simple_repeat Simple_repeat 2 41 0 189 0 0 0 chr4 88347687 88347708 -95940954 + (A)n Simple_repeat Simple_repeat 1 21 0 181 387 66 19 chr4 88348043 88348149 -95940513 - L2 LINE L2 -21 3292 3182 349 363 61 22 chr4 88348272 88348659 -95940003 - L2 LINE L2 -211 3061 2660 388 223 141 22 chr4 88348926 88349106 -95939556 + L1MC4 LINE L1 7025 7224 -741 250 275 25 0 chr4 88349262 88349342 -95939320 + L1MC5 LINE L1 7303 7384 -577 1839 136 7 31 chr4 88349486 88349772 -95938890 + AluSg SINE Alu 1 279 -31 246 294 87 35 chr4 88349810 88350041 -95938621 + L1MC5 LINE L1 7611 7853 -108 1154 288 108 15 chr4 88350740 88351317 -95937345 + MER69 DNA AcHobo 7 676 -550 410 215 63 103 chr4 88351500 88351668 -95936994 + MER69 DNA AcHobo 2220 2378 -148 1559 152 45 48 chr4 88351668 88351957 -95936705 + AluJo SINE Alu 12 299 -13 410 215 63 103 chr4 88351957 88352011 -95936651 + MER69 DNA AcHobo 2378 2433 -93 366 23 0 0 chr4 88352313 88352356 -95936306 + (CATA)n Simple_repeat Simple_repeat 4 46 0 3777 126 168 21 chr4 88354571 88355291 -95933371 - LTR12 LTR ERV1 0 826 1 414 0 0 0 chr4 88356651 88356697 -95931965 + (TG)n Simple_repeat Simple_repeat 2 47 0 209 284 75 67 chr4 88356747 88356881 -95931781 - L3b LINE CR1 -140 1443 1309 208 355 56 9 chr4 88357516 88357623 -95931039 + L2 LINE L2 3161 3272 0 1856 74 0 0 chr4 88357694 88357925 -95930737 + AluY SINE Alu 68 298 -13 24 0 0 0 chr4 88358343 88358367 -95930295 + AT_rich Low_complexity Low_complexity 1 24 0 7380 35 6 0 chr4 88358743 88360169 -95928493 + L1PA4 LINE L1 4722 6152 -3 525 194 0 0 chr4 88361066 88361159 -95927503 + FRAM SINE Alu 34 126 -50 2294 97 11 33 chr4 88361291 88361651 -95927011 + L1PB1 LINE L1 5798 6149 -2 267 122 20 20 chr4 88362126 88362175 -95926487 - MIR SINE MIR -152 110 62 198 0 0 0 chr4 88362521 88362543 -95926119 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 456 248 30 0 chr4 88362814 88362915 -95925747 - MER63 DNA MER1_type -58 778 675 1048 258 110 14 chr4 88363033 88363478 -95925184 + MER20B DNA MER1_type 236 723 -60 299 270 27 0 chr4 88363487 88363561 -95925101 - MIR3 SINE MIR -52 156 81 296 216 23 23 chr4 88364713 88364801 -95923861 + MER103 DNA DNA 67 154 -12 200 340 0 41 chr4 88367080 88367177 -95921485 + L2 LINE L2 3162 3254 -18 1787 181 81 34 chr4 88367217 88367268 -95921394 - MSTA LTR MaLR 0 428 381 2027 113 31 0 chr4 88367268 88367559 -95921103 - AluSx SINE Alu -12 300 1 1787 181 81 34 chr4 88367559 88367916 -95920746 - MSTA LTR MaLR -47 381 1 181 340 160 0 chr4 88369987 88370087 -95918575 - MIR SINE MIR -99 163 48 315 0 0 0 chr4 88370121 88370156 -95918506 + (TG)n Simple_repeat Simple_repeat 2 36 0 198 340 107 0 chr4 88370270 88370373 -95918289 + MIR SINE MIR 54 167 -95 284 275 25 12 chr4 88370447 88370527 -95918135 - L2 LINE L2 0 3272 3192 203 314 35 0 chr4 88370855 88370941 -95917721 - L2 LINE L2 -915 2399 2311 253 312 87 14 chr4 88371196 88371334 -95917328 - L2 LINE L2 -1366 1948 1801 23 54 0 0 chr4 88372382 88372419 -95916243 + AT_rich Low_complexity Low_complexity 1 37 0 2033 121 10 3 chr4 88372519 88372816 -95915846 - AluSg SINE Alu -11 299 1 21 0 0 0 chr4 88375323 88375344 -95913318 + AT_rich Low_complexity Low_complexity 1 21 0 1146 244 104 10 chr4 88375348 88375805 -95912857 - MLT1F LTR MaLR 0 542 2 45 55 0 0 chr4 88376153 88376226 -95912436 + AT_rich Low_complexity Low_complexity 1 73 0 192 97 0 0 chr4 88376497 88376528 -95912134 + (TA)n Simple_repeat Simple_repeat 2 32 0 192 385 10 0 chr4 88376597 88376693 -95911969 - MIR3 SINE MIR -28 180 84 221 320 45 83 chr4 88377010 88377166 -95911496 - L2 LINE L2 -604 2710 2561 186 351 0 39 chr4 88377611 88377688 -95910974 + L2 LINE L2 3198 3271 -1 24 0 0 0 chr4 88377991 88378015 -95910647 + AT_rich Low_complexity Low_complexity 1 24 0 1172 164 80 0 chr4 88378202 88378415 -95910247 - MER46A DNA MER2_type -6 230 1 23 0 0 0 chr4 88378752 88378775 -95909887 + AT_rich Low_complexity Low_complexity 1 23 0 199 349 24 80 chr4 88379424 88379577 -95909085 + L2 LINE L2 2895 3034 -238 2124 114 0 3 chr4 88379577 88379874 -95908788 - AluSq SINE Alu -17 296 1 199 349 24 80 chr4 88379874 88379932 -95908730 + L2 LINE L2 3034 3094 -178 296 291 0 39 chr4 88380022 88380125 -95908537 - MER103 DNA DNA -51 115 17 201 204 102 20 chr4 88381551 88381600 -95907062 + MIR SINE MIR 20 72 -190 24 0 0 0 chr4 88383674 88383698 -95904964 + AT_rich Low_complexity Low_complexity 1 24 0 212 356 68 48 chr4 88384438 88384584 -95904078 + L2 LINE L2 3123 3271 -1 824 190 49 0 chr4 88384696 88384859 -95903803 - MLT1E3 LTR MaLR 0 624 454 1147 347 32 18 chr4 88386667 88387232 -95901430 - L2 LINE L2 0 3313 2741 2708 100 3 0 chr4 88387437 88387826 -95900836 - L1PA13 LINE L1 -5 6158 5769 * 7646 178 18 1 chr4 88387823 88390126 -95898536 - L1PA11 LINE L1 -1 7611 5277 2444 36 0 0 chr4 88390128 88390429 -95898233 + L1P LINE L1 2368 2668 -3478 4218 38 2 4 chr4 88390529 88391060 -95897602 + L1P LINE L1 3174 3703 -2443 * 12560 215 49 31 chr4 88391058 88395332 -95893330 - L1PA11 LINE L1 -2292 5292 139 547 333 43 16 chr4 88395333 88395636 -95893026 + L2 LINE L2 2132 2442 -872 305 392 66 30 chr4 88395855 88396187 -95892475 - L2 LINE L2 -2628 686 343 699 12 0 0 chr4 88396503 88396583 -95892079 + (TTC)n Simple_repeat Simple_repeat 2 81 0 2805 42 0 0 chr4 88396584 88396920 -95891742 - L1PA3 LINE L1 -5 6150 5815 438 172 69 11 chr4 88397065 88397152 -95891510 + AluJ/FLAM SINE Alu 6 97 -215 417 20 0 0 chr4 88397178 88397228 -95891434 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 303 333 49 28 chr4 88397995 88398139 -95890523 + MIR SINE MIR 1 147 -115 355 126 53 0 chr4 88398379 88398474 -95890188 + (TA)n Simple_repeat Simple_repeat 1 100 0 189 121 0 0 chr4 88398500 88398533 -95890129 + (TA)n Simple_repeat Simple_repeat 1 33 0 205 228 134 55 chr4 88400389 88400516 -95888146 + MIR SINE MIR 81 217 -45 31 26 0 0 chr4 88400650 88400688 -95887974 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 71 chr4 88401031 88401073 -95887589 + AT_rich Low_complexity Low_complexity 1 39 0 31 26 0 0 chr4 88401101 88401139 -95887523 + AT_rich Low_complexity Low_complexity 1 38 0 1311 192 0 80 chr4 88401147 88401449 -95887213 + AluJb SINE Alu 5 282 -30 260 233 19 4 chr4 88401598 88401713 -95886949 + MIR SINE MIR 74 229 -33 262 138 35 0 chr4 88402118 88402176 -95886486 + (TA)n Simple_repeat Simple_repeat 1 60 0 230 299 37 0 chr4 88402203 88402310 -95886352 + (TA)n Simple_repeat Simple_repeat 2 112 0 240 269 39 0 chr4 88402314 88402418 -95886244 - L1MC4 LINE L1 -1339 6703 6596 207 231 0 0 chr4 88403154 88403193 -95885469 + (TA)n Simple_repeat Simple_repeat 1 39 0 247 349 54 24 chr4 88403262 88403428 -95885234 + MIR3 SINE MIR 17 187 -21 222 191 0 0 chr4 88403596 88403638 -95885024 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr4 88404719 88404740 -95883922 + AT_rich Low_complexity Low_complexity 1 21 0 450 36 0 0 chr4 88404818 88404874 -95883788 + (CA)n Simple_repeat Simple_repeat 2 57 0 387 0 0 0 chr4 88405561 88405604 -95883058 + (TG)n Simple_repeat Simple_repeat 2 44 0 28 29 0 0 chr4 88406755 88406790 -95881872 + AT_rich Low_complexity Low_complexity 1 35 0 2361 71 0 10 chr4 88406857 88407166 -95881496 + AluY SINE Alu 1 306 -5 1948 128 0 10 chr4 88407283 88407573 -95881089 + AluSx SINE Alu 1 287 -25 217 395 73 0 chr4 88407797 88407906 -95880756 - MIR SINE MIR -140 122 6 1815 204 0 16 chr4 88409504 88409869 -95878793 + MLT1A1 LTR MaLR 7 502 -3 22 0 0 0 chr4 88410460 88410482 -95878180 + AT_rich Low_complexity Low_complexity 1 22 0 313 291 13 95 chr4 88412458 88412616 -95876046 - MIR3 SINE MIR -48 160 16 302 306 0 41 chr4 88412798 88412919 -95875743 + MIR3 SINE MIR 86 201 -7 26 30 0 0 chr4 88413884 88413917 -95874745 + AT_rich Low_complexity Low_complexity 1 33 0 414 57 0 0 chr4 88414684 88414737 -95873925 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 21 0 0 0 chr4 88415219 88415240 -95873422 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr4 88415557 88415582 -95873080 + (TTTTTA)n Simple_repeat Simple_repeat 4 28 0 753 139 0 0 chr4 88415585 88415693 -95872969 - THE1C LTR MaLR -49 326 219 410 287 55 61 chr4 88417012 88417176 -95871486 + MIR SINE MIR 18 180 -82 201 74 0 0 chr4 88417489 88417516 -95871146 + (T)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr4 88418187 88418208 -95870454 + AT_rich Low_complexity Low_complexity 1 21 0 1861 136 0 11 chr4 88418211 88418487 -95870175 + AluSc SINE Alu 1 278 -31 222 37 0 0 chr4 88418487 88418514 -95870148 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 369 0 0 0 chr4 88418513 88418554 -95870108 + (TA)n Simple_repeat Simple_repeat 2 42 0 1861 136 0 11 chr4 88418514 88418563 -95870099 + AluSc SINE Alu 278 283 -26 2193 213 25 93 chr4 88419026 88419638 -95869024 - L1P3 LINE L1 -4743 1132 654 14725 149 20 10 chr4 88419638 88423157 -95865505 + L1PA10 LINE L1 2627 6157 -11 1897 154 23 47 chr4 88423284 88423668 -95864994 + THE1C LTR MaLR 1 375 0 391 285 48 42 chr4 88424676 88424841 -95863821 - MIR SINE MIR 0 262 97 950 47 94 0 chr4 88425554 88425681 -95862981 + MER85 DNA T2_type 1 139 0 21 0 0 0 chr4 88425697 88425718 -95862944 + AT_rich Low_complexity Low_complexity 1 21 0 194 305 12 61 chr4 88427338 88427420 -95861242 - L2 LINE L2 0 3313 3236 809 279 130 12 chr4 88427739 88428069 -95860593 - L2 LINE L2 -1 3312 2944 31 0 0 0 chr4 88428077 88428108 -95860554 + AT_rich Low_complexity Low_complexity 1 31 0 379 277 195 44 chr4 88428476 88428794 -95859868 + MLT1J LTR MaLR 38 403 -108 212 224 41 0 chr4 88428994 88429043 -95859619 + CT-rich Low_complexity Low_complexity 4 54 0 1134 258 121 7 chr4 88429045 88429491 -95859171 - L1MB7 LINE L1 -14 6668 6172 447 202 0 0 chr4 88429491 88429590 -95859072 + (TG)n Simple_repeat Simple_repeat 2 100 0 6386 263 110 26 chr4 88429590 88429629 -95859033 - L1MB7 LINE L1 -486 6190 6156 1325 209 32 60 chr4 88429629 88430030 -95858632 - MLT1B LTR MaLR 0 390 1 6386 263 110 26 chr4 88430030 88432368 -95856294 - L1MB7 LINE L1 -520 6156 4017 1965 157 21 8 chr4 88432368 88432744 -95855918 - L1MA5A LINE L1 -4 6293 5913 6386 263 110 26 chr4 88432744 88433472 -95855190 - L1MB7 LINE L1 -2659 4017 3352 898 232 35 123 chr4 88433472 88433895 -95854767 - MLT1B LTR MaLR -4 386 1 6386 263 110 26 chr4 88433895 88435044 -95853618 - L1MB7 LINE L1 -3324 3352 1705 219 93 23 23 chr4 88435076 88435119 -95853543 + (TTTTTG)n Simple_repeat Simple_repeat 2 44 0 1311 148 112 59 chr4 88435377 88435682 -95852980 - L1MA5A LINE L1 -12 6783 6463 1727 174 57 13 chr4 88435682 88436067 -95852595 - L1PA8 LINE L1 -9 6163 5762 5110 224 47 40 chr4 88436103 88436325 -95852337 - L1MA5A LINE L1 -743 5901 5682 180 0 0 0 chr4 88436325 88436345 -95852317 + (TTG)n Simple_repeat Simple_repeat 1 20 0 5110 224 47 40 chr4 88436345 88437962 -95850700 - L1MA5A LINE L1 -962 5682 498 267 238 53 102 chr4 88438141 88438347 -95850315 - L1MB7 LINE L1 -6335 207 12 1511 49 0 0 chr4 88439217 88439422 -95849240 + L1PA4 LINE L1 5953 6157 0 987 128 34 0 chr4 88439513 88439662 -95849000 - L1PA11 LINE L1 -4 6170 6017 613 207 36 21 chr4 88439992 88440132 -95848530 + FRAM SINE Alu 12 153 -23 238 182 148 68 chr4 88441229 88441317 -95847345 + MIR SINE MIR 86 180 -82 31 26 0 0 chr4 88441593 88441631 -95847031 + AT_rich Low_complexity Low_complexity 1 38 0 664 271 89 4 chr4 88442556 88442792 -95845870 - MIR SINE MIR -1 261 6 440 323 18 18 chr4 88443765 88443932 -95844730 - MIR3 SINE MIR -10 198 32 670 313 53 13 chr4 88443985 88444212 -95844450 + MIR SINE MIR 1 236 -26 332 252 42 17 chr4 88444457 88444576 -95844086 + L1MEd LINE L1 11 132 -5987 227 239 42 0 chr4 88444703 88444774 -95843888 - L1MB1 LINE L1 -4 6164 6091 490 319 78 49 chr4 88444950 88445625 -95843037 + L1MEd LINE L1 404 1098 -5021 2219 218 118 44 chr4 88445818 88446665 -95841997 + MER63C DNA MER1_type 1 910 -20 380 310 53 90 chr4 88446682 88446816 -95841846 - HAL1 LINE L1 -2007 500 363 267 79 0 0 chr4 88446816 88446854 -95841808 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 380 310 53 90 chr4 88446854 88446867 -95841795 - HAL1 LINE L1 -2144 363 351 1825 94 8 4 chr4 88446867 88447122 -95841540 - AluSx SINE Alu -56 256 1 380 310 53 90 chr4 88447122 88447386 -95841276 - HAL1 LINE L1 -2156 351 103 23 33 0 0 chr4 88448157 88448187 -95840475 + AT_rich Low_complexity Low_complexity 1 30 0 235 120 76 33 chr4 88448325 88448417 -95840245 + (TTATA)n Simple_repeat Simple_repeat 1 96 0 26 30 0 0 chr4 88449892 88449925 -95838737 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr4 88450010 88450036 -95838626 + AT_rich Low_complexity Low_complexity 1 26 0 1611 194 10 0 chr4 88450819 88451118 -95837544 + AluSx SINE Alu 3 304 -8 400 125 0 62 chr4 88451118 88451246 -95837416 + (GGAA)n Simple_repeat Simple_repeat 1 120 0 1107 152 57 33 chr4 88452479 88452690 -95835972 + MER30 DNA MER1_type 1 216 -14 228 67 0 0 chr4 88453197 88453227 -95835435 + (T)n Simple_repeat Simple_repeat 1 30 0 372 88 0 0 chr4 88453316 88453373 -95835289 + (GA)n Simple_repeat Simple_repeat 2 58 0 35 92 0 0 chr4 88455465 88455563 -95833099 + AT_rich Low_complexity Low_complexity 1 98 0 328 296 59 7 chr4 88456743 88456878 -95831784 + MIR SINE MIR 21 162 -100 252 123 86 0 chr4 88456890 88456971 -95831691 + (TA)n Simple_repeat Simple_repeat 1 88 0 41 21 0 0 chr4 88457216 88457264 -95831398 + AT_rich Low_complexity Low_complexity 1 48 0 270 373 103 0 chr4 88457957 88458083 -95830579 + MIR SINE MIR 48 186 -76 612 258 53 0 chr4 88458104 88458255 -95830407 + L1PB4 LINE L1 5996 6154 -2 220 246 35 0 chr4 88458283 88458340 -95830322 + MIR SINE MIR 176 234 -28 209 309 21 43 chr4 88459185 88459279 -95829383 + MIR3 SINE MIR 110 201 -7 262 258 0 16 chr4 88459448 88459510 -95829152 + GA-rich Low_complexity Low_complexity 4 64 0 25 51 0 0 chr4 88459693 88459732 -95828930 + AT_rich Low_complexity Low_complexity 1 39 0 576 186 144 66 chr4 88459769 88459936 -95828726 - AluJo SINE Alu -23 289 110 434 201 108 36 chr4 88459985 88460124 -95828538 + L1MA9 LINE L1 5980 6128 -184 4506 170 76 29 chr4 88460139 88461779 -95826883 - L1PA16 LINE L1 -12 6154 4439 1417 203 25 3 chr4 88461775 88462090 -95826572 + L1PA16 LINE L1 4111 4432 -1714 * 22 0 0 30 chr4 88462092 88462107 -95826555 + AT_rich Low_complexity Low_complexity 1 15 -17 515 222 51 8 chr4 88462107 88462224 -95826438 - AluJo SINE Alu -180 122 1 22 0 0 30 chr4 88462224 88462241 -95826421 + AT_rich Low_complexity Low_complexity 15 32 0 310 246 78 88 chr4 88463435 88463846 -95824816 - L1MC5 LINE L1 -215 7746 7340 564 263 90 53 chr4 88463961 88464809 -95823853 - L1ME2 LINE L1 -9 6155 5255 246 323 58 26 chr4 88464864 88465019 -95823643 - L1ME2 LINE L1 -974 5172 5013 204 97 0 0 chr4 88465350 88465381 -95823281 + (T)n Simple_repeat Simple_repeat 1 31 0 488 302 66 11 chr4 88465579 88465761 -95822901 + MIR SINE MIR 71 262 0 302 341 76 8 chr4 88466935 88467067 -95821595 - L2 LINE L2 -11 3302 3162 26 82 0 0 chr4 88467336 88467397 -95821265 + AT_rich Low_complexity Low_complexity 1 61 0 21 0 0 0 chr4 88467868 88467889 -95820773 + AT_rich Low_complexity Low_complexity 1 21 0 306 50 0 0 chr4 88467967 88468007 -95820655 + (CA)n Simple_repeat Simple_repeat 2 41 0 405 0 0 0 chr4 88468694 88468739 -95819923 + (TG)n Simple_repeat Simple_repeat 2 46 0 28 29 0 0 chr4 88469890 88469925 -95818737 + AT_rich Low_complexity Low_complexity 1 35 0 2325 75 0 10 chr4 88469992 88470298 -95818364 + AluY SINE Alu 2 303 -8 1922 131 0 10 chr4 88470415 88470705 -95817957 + AluSx SINE Alu 1 287 -25 217 395 73 0 chr4 88470929 88471038 -95817624 - MIR SINE MIR -140 122 6 1815 204 0 16 chr4 88472636 88473001 -95815661 + MLT1A1 LTR MaLR 7 502 -3 22 0 0 0 chr4 88473592 88473614 -95815048 + AT_rich Low_complexity Low_complexity 1 22 0 313 291 13 95 chr4 88475590 88475748 -95812914 - MIR3 SINE MIR -48 160 16 302 306 0 41 chr4 88475930 88476051 -95812611 + MIR3 SINE MIR 86 201 -7 26 30 0 0 chr4 88477016 88477049 -95811613 + AT_rich Low_complexity Low_complexity 1 33 0 378 61 0 0 chr4 88477816 88477865 -95810797 + (TTCA)n Simple_repeat Simple_repeat 1 49 0 21 0 0 0 chr4 88478347 88478368 -95810294 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr4 88478685 88478710 -95809952 + (TTTTTA)n Simple_repeat Simple_repeat 4 28 0 753 139 0 0 chr4 88478713 88478821 -95809841 - THE1C LTR MaLR -49 326 219 410 287 55 61 chr4 88480140 88480304 -95808358 + MIR SINE MIR 18 180 -82 201 74 0 0 chr4 88480617 88480644 -95808018 + (T)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr4 88481315 88481336 -95807326 + AT_rich Low_complexity Low_complexity 1 21 0 1861 136 0 11 chr4 88481339 88481615 -95807047 + AluSc SINE Alu 1 278 -31 204 40 0 0 chr4 88481615 88481640 -95807022 + (TG)n Simple_repeat Simple_repeat 2 26 0 * 405 0 0 0 chr4 88481639 88481684 -95806978 + (TA)n Simple_repeat Simple_repeat 1 45 0 1861 136 0 11 chr4 88481640 88481693 -95806969 + AluSc SINE Alu 278 283 -26 2193 213 25 93 chr4 88482156 88482768 -95805894 - L1P3 LINE L1 -4743 1132 654 11543 150 15 21 chr4 88482768 88484865 -95803797 + L1P LINE L1 2627 4711 -1435 340 266 117 13 chr4 88484870 88485024 -95803638 + MER20B DNA MER1_type 372 541 -242 1955 208 81 9 chr4 88485328 88485761 -95802901 - MLT2B1 LTR ERVL -56 464 1 1161 180 28 0 chr4 88485769 88485986 -95802676 - ERVL-B1 LTR ERVL -23 5741 5519 280 245 29 78 chr4 88485987 88486089 -95802573 - Tigger5 DNA MER2_type -1 2322 2226 * 387 149 45 0 chr4 88486065 88486132 -95802530 + Tigger5 DNA MER2_type 2251 2320 -3 * 493 190 0 0 chr4 88486132 88486210 -95802452 - Tigger5 DNA MER2_type -2245 78 1 12386 166 16 3 chr4 88486216 88488288 -95800374 - ERVL-B1 LTR ERVL -250 5514 3417 1375 138 5 0 chr4 88488301 88488511 -95800151 - MLT2B2 LTR ERVL -304 211 1 1264 215 39 28 chr4 88488534 88488818 -95799844 + AluJb SINE Alu 1 287 -25 527 153 0 63 chr4 88488829 88488940 -95799722 + AluSg SINE Alu 1 104 -206 200 74 0 0 chr4 88488947 88488974 -95799688 + (TA)n Simple_repeat Simple_repeat 2 28 0 26 0 0 0 chr4 88488974 88489000 -95799662 + AT_rich Low_complexity Low_complexity 1 26 0 306 264 69 0 chr4 88489000 88489087 -95799575 + L1MC4 LINE L1 6613 6705 -1337 350 145 0 0 chr4 88489087 88489156 -95799506 + (TA)n Simple_repeat Simple_repeat 1 69 0 1845 107 46 11 chr4 88489157 88489438 -95799224 - AluSg1 SINE Alu -18 291 1 252 77 0 0 chr4 88489461 88489500 -95799162 + (TG)n Simple_repeat Simple_repeat 2 40 0 1332 218 92 17 chr4 88490222 88490570 -95798092 - MLT1A2 LTR MaLR 0 374 1 5542 190 61 26 chr4 88490673 88492217 -95796445 - L1M1 LINE L1 -745 5401 3940 938 176 19 46 chr4 88492217 88492433 -95796229 - L1M2 LINE L1 -675 5616 5407 26 0 0 0 chr4 88493680 88493706 -95794956 + AT_rich Low_complexity Low_complexity 1 26 0 24 53 0 0 chr4 88493858 88493896 -95794766 + AT_rich Low_complexity Low_complexity 1 38 0 234 156 0 0 chr4 88494919 88494964 -95793698 - LTR66 LTR ERVL -172 438 394 187 154 19 19 chr4 88494978 88495030 -95793632 + (TATATG)n Simple_repeat Simple_repeat 5 56 0 26 0 0 0 chr4 88499137 88499163 -95789499 + AT_rich Low_complexity Low_complexity 1 26 0 272 289 44 11 chr4 88499706 88499766 -95788896 - L1M1 LINE L1 -2932 3214 3157 1671 186 26 13 chr4 88499766 88500152 -95788510 - L1MB3 LINE L1 -8 6175 5785 272 289 44 11 chr4 88500152 88500271 -95788391 - L1M1 LINE L1 -2989 3157 3029 275 151 0 0 chr4 88500296 88500349 -95788313 - L1M4c LINE L1 -5300 1084 1032 7727 215 43 21 chr4 88500362 88503429 -95785233 - L1M4 LINE L1 -3140 3242 5 188 209 104 15 chr4 88506650 88506717 -95781945 + MIR SINE MIR 135 207 -55 653 301 96 25 chr4 88506797 88507036 -95781626 - MIR SINE MIR -2 260 5 2028 120 150 8 chr4 88507148 88507522 -95781140 - MSTA LTR MaLR 0 428 2 25 31 0 0 chr4 88508172 88508204 -95780458 + AT_rich Low_complexity Low_complexity 1 32 0 808 188 81 69 chr4 88508229 88508549 -95780113 - L1MC5 LINE L1 -25 7936 7613 782 238 24 17 chr4 88508570 88508827 -95779835 - L1MEc LINE L1 -3826 2399 2167 1707 210 44 5 chr4 88508829 88509238 -95779424 - L1MA4 LINE L1 -4 6296 5872 1154 268 69 84 chr4 88509308 88509895 -95778767 - L1MEc LINE L1 -4306 2090 1496 1761 53 0 9 chr4 88509895 88510123 -95778539 + L1PA5 LINE L1 5928 6153 -1 1154 268 69 84 chr4 88510123 88510667 -95777995 - L1MEc LINE L1 -4900 1496 983 2177 87 0 30 chr4 88510667 88510965 -95777697 - AluSg1 SINE Alu -20 289 1 1154 268 69 84 chr4 88510965 88511284 -95777378 - L1MEc LINE L1 -5413 983 661 2270 93 0 13 chr4 88511688 88511990 -95776672 - AluY SINE Alu -13 298 1 2333 74 3 3 chr4 88512307 88512616 -95776046 - AluY SINE Alu -2 309 1 3033 171 36 2 chr4 88512848 88513437 -95775225 + L1MB3 LINE L1 5574 6182 -1 865 326 75 34 chr4 88513614 88514536 -95774126 + L2 LINE L2 2277 3311 -2 291 348 25 69 chr4 88514873 88515077 -95773585 - MIR SINE MIR -10 252 58 778 244 18 14 chr4 88517282 88517503 -95771159 + L1ME1 LINE L1 5889 6110 -56 * 1193 42 0 0 chr4 88517501 88517645 -95771017 - L1PA4 LINE L1 -210 5945 5802 1577 51 5 0 chr4 88517645 88517836 -95770826 + L1PA4 LINE L1 5956 6152 -3 251 284 137 20 chr4 88518387 88518489 -95770173 + MLT1L LTR MaLR 46 159 -456 310 221 14 40 chr4 88518489 88518615 -95770047 + MER5A DNA MER1_type 5 189 0 415 340 50 14 chr4 88518770 88518819 -95769843 + MLT1L LTR MaLR 322 368 -247 297 0 0 0 chr4 88518819 88518852 -95769810 + (CA)n Simple_repeat Simple_repeat 1 33 0 415 340 50 14 chr4 88518852 88519084 -95769578 + MLT1L LTR MaLR 368 613 -2 2211 96 0 0 chr4 88519154 88519447 -95769215 + AluY SINE Alu 1 293 -18 305 291 99 13 chr4 88519674 88519825 -95768837 + L1MC5 LINE L1 7772 7935 -26 25 31 0 0 chr4 88520176 88520208 -95768454 + AT_rich Low_complexity Low_complexity 1 32 0 24 85 0 0 chr4 88521246 88521305 -95767357 + AT_rich Low_complexity Low_complexity 1 59 0 229 279 93 23 chr4 88521530 88521616 -95767046 - L2 LINE L2 -210 3062 2971 29 0 0 0 chr4 88522449 88522478 -95766184 + AT_rich Low_complexity Low_complexity 1 29 0 45 55 0 0 chr4 88522821 88522894 -95765768 + AT_rich Low_complexity Low_complexity 1 73 0 7651 149 50 32 chr4 88523493 88523684 -95764978 - Tigger1 DNA MER2_type -10 2408 2222 2183 92 3 0 chr4 88523684 88523976 -95764686 + AluY SINE Alu 1 293 -18 7651 149 50 32 chr4 88523976 88524173 -95764489 - Tigger1 DNA MER2_type -196 2222 2030 2274 106 0 0 chr4 88524173 88524485 -95764177 - AluSq SINE Alu -1 312 1 7651 149 50 32 chr4 88524485 88525560 -95763102 - Tigger1 DNA MER2_type -388 2030 918 1601 166 102 19 chr4 88525560 88525873 -95762789 + MER1B DNA MER1_type 1 339 0 4871 164 24 29 chr4 88525882 88526807 -95761855 - Tigger1 DNA MER2_type -1498 920 1 24 0 0 0 chr4 88527345 88527369 -95761293 + AT_rich Low_complexity Low_complexity 1 24 0 256 233 68 0 chr4 88527466 88527539 -95761123 - LTR33 LTR ERVL -21 500 423 181 182 68 0 chr4 88527765 88527809 -95760853 + MER5A DNA MER1_type 101 147 -42 22 35 0 0 chr4 88528477 88528506 -95760156 + AT_rich Low_complexity Low_complexity 1 29 0 2145 133 7 0 chr4 88528877 88529186 -95759476 + AluSx SINE Alu 2 312 0 23 33 0 0 chr4 88529204 88529234 -95759428 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 88529419 88529440 -95759222 + AT_rich Low_complexity Low_complexity 1 21 0 249 250 19 58 chr4 88529673 88529777 -95758885 - MIR SINE MIR -65 197 98 198 337 23 12 chr4 88530562 88530648 -95758014 - MIR SINE MIR -165 97 11 1889 162 3 0 chr4 88531104 88531401 -95757261 - AluJb SINE Alu -14 298 1 29 0 0 0 chr4 88531403 88531432 -95757230 + AT_rich Low_complexity Low_complexity 1 29 0 186 279 33 16 chr4 88534495 88534556 -95754106 + MIR SINE MIR 105 166 -96 22 56 0 0 chr4 88534589 88534625 -95754037 + AT_rich Low_complexity Low_complexity 1 36 0 26 30 0 0 chr4 88534818 88534851 -95753811 + AT_rich Low_complexity Low_complexity 1 33 0 219 296 21 56 chr4 88535482 88535615 -95753047 + MIR SINE MIR 14 146 -62 2345 67 0 7 chr4 88536846 88537146 -95751516 + AluY SINE Alu 1 298 -13 524 268 113 24 chr4 88537217 88537385 -95751277 + MIR SINE MIR 64 246 -16 23 0 0 0 chr4 88537533 88537556 -95751106 + AT_rich Low_complexity Low_complexity 1 23 0 208 203 54 14 chr4 88538789 88538863 -95749799 + (TATAG)n Simple_repeat Simple_repeat 3 79 0 201 390 62 37 chr4 88538883 88539155 -95749507 - L3 LINE CR1 -1297 280 2 380 329 136 9 chr4 88539629 88539753 -95748909 + MIR SINE MIR 20 127 -135 252 0 0 0 chr4 88539753 88539781 -95748881 + (TA)n Simple_repeat Simple_repeat 1 28 0 380 329 136 9 chr4 88539781 88539869 -95748793 + MIR SINE MIR 127 259 -3 2270 62 0 10 chr4 88540129 88540417 -95748245 + AluY SINE Alu 1 285 -26 180 0 0 0 chr4 88540837 88540857 -95747805 + (TC)n Simple_repeat Simple_repeat 1 20 0 195 42 0 0 chr4 88540976 88541000 -95747662 + (TCCC)n Simple_repeat Simple_repeat 4 27 0 322 328 76 0 chr4 88541547 88541666 -95746996 - L2 LINE L2 -2 3311 3184 1272 269 154 27 chr4 88542730 88543406 -95745256 + MER20B DNA MER1_type 2 763 -20 253 353 60 0 chr4 88543639 88543755 -95744907 - L2 LINE L2 -13 3259 3137 250 322 11 0 chr4 88544586 88544673 -95743989 - MER5C DNA MER1_type -236 88 1 * 376 254 55 0 chr4 88544673 88544776 -95743886 + MIR SINE MIR 30 138 -124 1170 159 48 0 chr4 88544936 88545143 -95743519 + AluSp SINE Alu 83 299 -14 547 265 113 25 chr4 88545185 88545389 -95743273 + MLT1J LTR MaLR 266 487 -24 205 365 47 0 chr4 88545511 88545596 -95743066 - L2 LINE L2 0 3272 3184 186 43 0 0 chr4 88545799 88545822 -95742840 + (TA)n Simple_repeat Simple_repeat 1 23 0 22 0 0 0 chr4 88546219 88546241 -95742421 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr4 88547195 88547236 -95741426 + AT_rich Low_complexity Low_complexity 1 41 0 941 266 95 50 chr4 88547507 88547830 -95740832 - MLT1E2 LTR MaLR -111 515 165 1962 162 0 0 chr4 88547830 88548126 -95740536 + AluJb SINE Alu 1 296 -16 941 266 95 50 chr4 88548126 88548245 -95740417 - MLT1E2 LTR MaLR -461 165 53 21 36 0 0 chr4 88548544 88548572 -95740090 + AT_rich Low_complexity Low_complexity 1 28 0 1531 43 0 0 chr4 88549206 88549394 -95739268 - L1PA4 LINE L1 -1 6154 5967 468 77 0 0 chr4 88549661 88549726 -95738936 + (TA)n Simple_repeat Simple_repeat 2 66 0 2264 139 31 17 chr4 88549760 88550119 -95738543 - THE1B LTR MaLR 0 364 1 10834 112 9 6 chr4 88550119 88551694 -95736968 - THE1B-int LTR MaLR 0 1580 1 1931 153 54 20 chr4 88551694 88552046 -95736616 - THE1B LTR MaLR 0 364 1 192 375 42 0 chr4 88553245 88553317 -95735345 + L2 LINE L2 3236 3310 -3 22 70 0 0 chr4 88554603 88554646 -95734016 + AT_rich Low_complexity Low_complexity 1 43 0 28 29 0 0 chr4 88554655 88554690 -95733972 + AT_rich Low_complexity Low_complexity 1 35 0 1460 184 47 30 chr4 88554692 88554991 -95733671 + AluJo SINE Alu 1 304 -8 1903 156 3 3 chr4 88555199 88555494 -95733168 - AluSx SINE Alu -17 295 1 198 0 0 0 chr4 88556740 88556762 -95731900 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 2656 176 31 16 chr4 88556994 88557541 -95731121 + L1MB3 LINE L1 5626 6180 -3 609 274 20 7 chr4 88560851 88561004 -95727658 + MIR SINE MIR 66 220 -42 1742 157 11 14 chr4 88561226 88561513 -95727149 + AluSx SINE Alu 1 286 -26 955 220 11 5 chr4 88562482 88562668 -95725994 - Tigger3(Golem) DNA MER2_type -2841 188 2 21 0 0 0 chr4 88563510 88563531 -95725131 + AT_rich Low_complexity Low_complexity 1 21 0 198 216 196 41 chr4 88563969 88564066 -95724596 - MIR SINE MIR -31 231 120 1244 217 152 60 chr4 88564447 88564894 -95723768 - MLT1F1 LTR MaLR -11 556 69 213 39 0 0 chr4 88565159 88565185 -95723477 + (TTTTTA)n Simple_repeat Simple_repeat 5 30 0 201 74 0 0 chr4 88567439 88567466 -95721196 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 25 31 0 0 chr4 88568461 88568493 -95720169 + AT_rich Low_complexity Low_complexity 1 32 0 248 289 79 44 chr4 88568554 88568668 -95719994 - L2 LINE L2 0 3272 3155 258 81 0 0 chr4 88568922 88568959 -95719703 + (TCTA)n Simple_repeat Simple_repeat 1 37 0 187 212 0 0 chr4 88569116 88569149 -95719513 + L2 LINE L2 3213 3245 -27 23 108 0 0 chr4 88570362 88570455 -95718207 + AT_rich Low_complexity Low_complexity 1 93 0 1497 198 29 19 chr4 88570482 88570790 -95717872 - AluJo SINE Alu -1 311 1 1610 199 7 3 chr4 88570978 88571280 -95717382 - AluJb SINE Alu -4 308 6 1636 191 36 6 chr4 88571407 88571736 -95716926 - MER44D DNA MER2_type 0 609 1 21 0 0 0 chr4 88572089 88572110 -95716552 + AT_rich Low_complexity Low_complexity 1 21 0 1647 253 38 26 chr4 88572179 88572677 -95715985 + MLT1D LTR MaLR 2 505 0 1123 102 25 20 chr4 88574295 88574492 -95714170 - L1P2 LINE L1 -665 5490 5293 1217 174 32 84 chr4 88574850 88575161 -95713501 - AluJo SINE Alu -4 308 14 818 20 10 0 chr4 88576879 88576979 -95711683 + (TAGA)n Simple_repeat Simple_repeat 4 104 0 1599 144 37 26 chr4 88576979 88577250 -95711412 - AluSx SINE Alu -38 274 1 520 327 54 22 chr4 88577283 88577506 -95711156 + MIR SINE MIR 2 231 -31 1777 181 0 0 chr4 88579201 88579489 -95709173 + AluJb SINE Alu 1 288 -24 27 0 0 0 chr4 88579741 88579768 -95708894 + AT_rich Low_complexity Low_complexity 1 27 0 2275 92 14 0 chr4 88580418 88580713 -95707949 + AluSg SINE Alu 1 299 -11 245 302 16 0 chr4 88582918 88582981 -95705681 + MIR SINE MIR 57 120 -88 25 51 0 0 chr4 88583412 88583451 -95705211 + AT_rich Low_complexity Low_complexity 1 39 0 1867 125 11 7 chr4 88584839 88585157 -95703505 - AluSx SINE Alu 0 329 11 189 0 0 0 chr4 88585195 88585216 -95703446 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1958 77 21 45 chr4 88585219 88585505 -95703157 - AluSc SINE Alu -30 279 1 2141 61 0 4 chr4 88585517 88585781 -95702881 - AluSc SINE Alu -8 301 39 366 183 0 12 chr4 88585942 88586024 -95702638 + L1MA4A LINE L1 6016 6096 -207 261 0 0 0 chr4 88586060 88586089 -95702573 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1977 116 4 0 chr4 88586092 88586367 -95702295 - AluSp SINE Alu -37 276 1 236 256 56 22 chr4 88589877 88589967 -95698695 + L3b LINE CR1 1135 1227 -356 567 258 12 24 chr4 88590683 88590850 -95697812 + MIR SINE MIR 98 262 0 690 340 79 37 chr4 88591491 88592024 -95696638 - L2 LINE L2 -40 3273 2719 5221 162 44 24 chr4 88592039 88593404 -95695258 - L1MA4A LINE L1 -6 6297 4906 979 318 47 53 chr4 88593693 88594263 -95694399 - L2 LINE L2 -997 2317 1751 459 316 52 48 chr4 88594290 88594521 -95694141 - L2 LINE L2 -1811 1503 1272 242 351 14 0 chr4 88594768 88594842 -95693820 + MIR SINE MIR 32 106 -156 1693 129 13 79 chr4 88595814 88596132 -95692530 - AluSq SINE Alu -16 297 1 1843 114 8 0 chr4 88596211 88596473 -95692189 + AluSg SINE Alu 46 309 -1 796 304 73 36 chr4 88596509 88596920 -95691742 + LTR16A LTR ERVL 18 443 -7 25 31 0 0 chr4 88598084 88598116 -95690546 + AT_rich Low_complexity Low_complexity 1 32 0 1901 120 55 0 chr4 88598127 88598419 -95690243 - AluSc SINE Alu -1 308 1 29 28 0 0 chr4 88598485 88598521 -95690141 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr4 88598648 88598676 -95689986 + AT_rich Low_complexity Low_complexity 1 28 0 345 299 35 35 chr4 88599403 88599547 -95689115 - L2 LINE L2 -9 3304 3161 745 235 135 31 chr4 88599580 88599840 -95688822 - MER2 DNA MER2_type 0 345 59 628 254 138 5 chr4 88599971 88600160 -95688502 - L2 LINE L2 -439 2875 2662 332 286 165 0 chr4 88600201 88600334 -95688328 - MLT1J LTR MaLR -102 409 255 410 305 93 37 chr4 88600745 88601014 -95687648 + L2 LINE L2 3029 3312 -1 2307 86 3 0 chr4 88602463 88602764 -95685898 + AluY SINE Alu 1 302 -9 596 236 112 93 chr4 88603217 88603582 -95685080 + MLT1J LTR MaLR 114 425 -21 190 306 65 59 chr4 88603605 88603705 -95684957 + MIR SINE MIR 88 186 -76 1618 134 0 8 chr4 88603705 88603943 -95684719 + AluSx SINE Alu 33 268 -44 190 306 65 59 chr4 88603943 88603967 -95684695 + MIR SINE MIR 186 208 -54 911 186 23 6 chr4 88603967 88604139 -95684523 + FAM SINE Alu 1 175 0 190 306 65 59 chr4 88604139 88604183 -95684479 + MIR SINE MIR 208 258 -4 2237 128 8 35 chr4 88604752 88605126 -95683536 - THE1B LTR MaLR 0 364 1 11218 107 10 1 chr4 88605126 88606691 -95681971 - THE1B-int LTR MaLR 0 1580 1 2320 117 3 38 chr4 88606699 88607067 -95681595 - THE1B LTR MaLR -8 356 2 258 182 76 0 chr4 88607281 88607347 -95681315 - MER103 DNA DNA -77 89 19 200 284 95 0 chr4 88608752 88608826 -95679836 - MIR SINE MIR -67 195 115 27 87 0 0 chr4 88609773 88609842 -95678820 + AT_rich Low_complexity Low_complexity 1 69 0 23 0 0 0 chr4 88610106 88610129 -95678533 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr4 88610232 88610269 -95678393 + AT_rich Low_complexity Low_complexity 1 37 0 1662 148 0 46 chr4 88610779 88611063 -95677599 - AluJb SINE Alu -2 310 40 454 387 12 6 chr4 88613230 88613403 -95675259 + L3 LINE CR1 1402 1575 -2 1868 159 35 61 chr4 88613757 88614152 -95674510 + MLT1B LTR MaLR 6 390 0 295 213 13 13 chr4 88614233 88614308 -95674354 + MER20 DNA MER1_type 90 164 -55 294 29 0 0 chr4 88615393 88615428 -95673234 + (TG)n Simple_repeat Simple_repeat 2 36 0 357 295 135 33 chr4 88615639 88615883 -95672779 - MLT1J LTR MaLR -19 492 224 22 35 0 0 chr4 88616720 88616749 -95671913 + AT_rich Low_complexity Low_complexity 1 29 0 1991 116 0 4 chr4 88617196 88617472 -95671190 + AluSg SINE Alu 25 299 -11 327 218 0 0 chr4 88618004 88618087 -95670575 + L1ME3A LINE L1 6088 6169 -1 244 326 42 11 chr4 88618169 88618264 -95670398 + L2 LINE L2 3211 3308 -5 2563 102 5 8 chr4 88618706 88619090 -95669572 + L1PA8 LINE L1 5789 6171 -1 5412 145 10 7 chr4 88619096 88620047 -95668615 + L1PA15 LINE L1 5318 6300 0 1479 197 3 20 chr4 88621573 88621872 -95666790 + AluJo SINE Alu 1 294 -8 24 77 0 0 chr4 88622372 88622424 -95666238 + AT_rich Low_complexity Low_complexity 1 52 0 24 0 0 0 chr4 88622499 88622523 -95666139 + AT_rich Low_complexity Low_complexity 1 24 0 34 0 0 0 chr4 88623343 88623377 -95665285 + AT_rich Low_complexity Low_complexity 1 34 0 27 0 0 0 chr4 88624228 88624255 -95664407 + AT_rich Low_complexity Low_complexity 1 27 0 1681 297 197 22 chr4 88625102 88626418 -95662244 - L2 LINE L2 0 3313 1760 595 285 32 35 chr4 88626420 88626704 -95661958 - L1ME LINE L1 -523 5622 5340 514 310 70 53 chr4 88626923 88627924 -95660738 - L1MEd LINE L1 -891 1599 568 336 261 0 0 chr4 88628061 88628191 -95660471 + (TA)n Simple_repeat Simple_repeat 2 131 0 1580 204 3 7 chr4 88628398 88628687 -95659975 - AluJo SINE Alu -24 288 1 531 287 65 30 chr4 88628848 88629078 -95659584 + MIR SINE MIR 23 260 -2 455 342 54 8 chr4 88629178 88629418 -95659244 + MIR SINE MIR 12 262 0 432 0 0 0 chr4 88630426 88630474 -95658188 + (CA)n Simple_repeat Simple_repeat 2 49 0 21 36 0 0 chr4 88630809 88630837 -95657825 + AT_rich Low_complexity Low_complexity 1 28 0 1267 93 6 0 chr4 88631350 88631533 -95657129 + L1PA13 LINE L1 5980 6163 0 569 207 103 0 chr4 88632084 88632229 -95656433 - FRAM SINE Alu -9 167 8 225 154 0 0 chr4 88632329 88632368 -95656294 + (TA)n Simple_repeat Simple_repeat 2 40 0 13711 189 31 35 chr4 88632684 88632844 -95655818 - Tigger2 DNA MER2_type 0 2718 2559 288 0 0 0 chr4 88632844 88632876 -95655786 + (TA)n Simple_repeat Simple_repeat 1 32 0 189 0 0 0 chr4 88632875 88632896 -95655766 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 13711 189 31 35 chr4 88632876 88633136 -95655526 - Tigger2 DNA MER2_type -159 2559 2300 2492 105 3 0 chr4 88633136 88633487 -95655175 + THE1A LTR MaLR 1 352 -3 13711 189 31 35 chr4 88633487 88635812 -95652850 - Tigger2 DNA MER2_type -418 2300 2 1517 182 11 115 chr4 88636886 88636938 -95651724 - MLT1B LTR MaLR 0 390 334 2230 137 190 24 chr4 88636938 88637390 -95651272 - MER1A DNA MER1_type 0 527 1 1517 182 11 115 chr4 88637390 88637772 -95650890 - MLT1B LTR MaLR -56 334 1 290 260 27 0 chr4 88637903 88637976 -95650686 + L2 LINE L2 3198 3272 0 21 36 0 0 chr4 88638086 88638114 -95650548 + AT_rich Low_complexity Low_complexity 1 28 0 346 326 28 33 chr4 88638857 88639038 -95649624 + MIR SINE MIR 56 235 -27 21 36 0 0 chr4 88639606 88639634 -95649028 + AT_rich Low_complexity Low_complexity 1 28 0 758 294 19 5 chr4 88639712 88639926 -95648736 - MIR SINE MIR -21 241 25 1772 180 6 12 chr4 88640104 88640448 -95648214 - L1MC1 LINE L1 -15 6318 5977 414 282 7 13 chr4 88640618 88640767 -95647895 - L1M4 LINE L1 -1289 4857 4710 748 241 30 25 chr4 88641745 88641948 -95646714 - MLT1C LTR MaLR 0 467 264 636 243 20 7 chr4 88642067 88642219 -95646443 - MLT1C LTR MaLR -170 220 67 500 253 68 26 chr4 88642995 88643185 -95645477 - MIR SINE MIR -1 261 64 21 36 0 0 chr4 88643291 88643319 -95645343 + AT_rich Low_complexity Low_complexity 1 28 0 230 190 279 0 chr4 88643402 88643481 -95645181 - MER103 DNA DNA -7 159 59 699 247 18 12 chr4 88643658 88643824 -95644838 + FRAM SINE Alu 1 163 -13 414 0 0 0 chr4 88644177 88644223 -95644439 + (CA)n Simple_repeat Simple_repeat 2 47 0 24 0 0 0 chr4 88645384 88645408 -95643254 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr4 88645561 88645589 -95643073 + AT_rich Low_complexity Low_complexity 1 28 0 228 222 0 0 chr4 88645810 88645855 -95642807 + (TG)n Simple_repeat Simple_repeat 2 46 0 1858 225 81 4 chr4 88645895 88646362 -95642300 + MLT1D LTR MaLR 1 503 -2 21 0 0 0 chr4 88647256 88647277 -95641385 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 88647462 88647483 -95641179 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 88647583 88647604 -95641058 + AT_rich Low_complexity Low_complexity 1 21 0 319 297 90 27 chr4 88647859 88647970 -95640692 - L3 LINE CR1 -5 1572 1455 620 205 0 0 chr4 88648707 88648819 -95639843 + L1PB3 LINE L1 6038 6149 -5 1868 151 31 0 chr4 88649129 88649420 -95639242 - AluSx SINE Alu -12 300 1 21 0 0 0 chr4 88650036 88650057 -95638605 + AT_rich Low_complexity Low_complexity 1 21 0 890 267 140 6 chr4 88651520 88651842 -95636820 - MLT1A1 LTR MaLR 0 365 1 246 136 0 0 chr4 88651981 88652025 -95636637 + (CA)n Simple_repeat Simple_repeat 2 45 0 864 259 99 68 chr4 88652560 88652954 -95635708 - LTR41 LTR ERVL -6 767 362 657 286 25 5 chr4 88653194 88653393 -95635269 - LTR41 LTR ERVL -570 203 1 1752 176 19 26 chr4 88653969 88654282 -95634380 + AluJb SINE Alu 1 311 -1 2053 133 3 13 chr4 88654372 88654680 -95633982 + AluSp SINE Alu 1 305 -8 190 188 47 47 chr4 88655063 88655127 -95633535 + MIR SINE MIR 128 191 -71 211 309 73 63 chr4 88655301 88655492 -95633170 + L2 LINE L2 2342 2534 -780 723 186 8 0 chr4 88656041 88656170 -95632492 - FLAM_C SINE Alu -13 130 1 239 275 43 0 chr4 88656221 88656290 -95632372 - MIR SINE MIR -131 131 60 491 235 27 77 chr4 88657542 88657725 -95630937 + MER5B DNA MER1_type 5 178 0 341 240 53 0 chr4 88657826 88657901 -95630761 + MIR SINE MIR 71 149 -113 198 0 0 0 chr4 88660607 88660629 -95628033 + (GCATG)n Simple_repeat Simple_repeat 4 25 0 24 91 0 0 chr4 88662831 88662897 -95625765 + AT_rich Low_complexity Low_complexity 1 66 0 241 0 59 0 chr4 88663340 88663374 -95625288 + L1PA7 LINE L1 6114 6149 -5 303 324 6 106 chr4 88663527 88663697 -95624965 - MER91A DNA MER1_type 0 196 44 337 278 10 0 chr4 88664205 88664302 -95624360 + MLT1L LTR MaLR 513 610 -5 1008 285 62 32 chr4 88664302 88664964 -95623698 + L2 LINE L2 2645 3313 0 605 234 156 10 chr4 88665276 88665481 -95623181 + Charlie1 DNA MER1_type 2216 2450 -311 285 267 0 0 chr4 88665701 88665776 -95622886 + Charlie1 DNA MER1_type 2672 2746 -15 211 220 20 0 chr4 88666080 88666130 -95622532 + (TGAA)n Simple_repeat Simple_repeat 3 53 0 3519 75 0 2 chr4 88667189 88667671 -95620991 - L1PA8 LINE L1 -798 5348 4868 5816 91 9 0 chr4 88667671 88668480 -95620182 + L1PA8 LINE L1 5355 6172 0 201 282 71 47 chr4 88668572 88668657 -95620005 - MIR SINE MIR -64 144 58 246 343 34 68 chr4 88669794 88669940 -95618722 + MIR SINE MIR 2 142 -120 1497 196 0 21 chr4 88669943 88670228 -95618434 + AluJb SINE Alu 3 281 -31 23 54 0 0 chr4 88670231 88670268 -95618394 + AT_rich Low_complexity Low_complexity 1 37 0 188 133 0 22 chr4 88670515 88670529 -95618133 + (TAAAAA)n Simple_repeat Simple_repeat 4 17 -30 1683 123 13 80 chr4 88670529 88670739 -95617923 + AluSx SINE Alu 3 189 -123 2050 119 0 7 chr4 88670739 88671063 -95617599 - AluSx SINE Alu 0 312 1 1683 123 13 80 chr4 88671063 88671154 -95617508 + AluSx SINE Alu 189 284 -28 188 133 0 22 chr4 88671154 88671184 -95617478 + (TAAAAA)n Simple_repeat Simple_repeat 17 47 0 397 300 50 0 chr4 88672901 88673001 -95615661 - L2 LINE L2 -27 3245 3141 21 57 0 0 chr4 88673769 88673804 -95614858 + AT_rich Low_complexity Low_complexity 1 35 0 217 329 55 41 chr4 88673913 88674059 -95614603 + MER5A DNA MER1_type 36 183 -6 500 195 8 70 chr4 88674322 88674391 -95614271 - Charlie1 DNA MER1_type -13 2748 2689 986 246 18 0 chr4 88674391 88674611 -95614051 + MER58A DNA MER1_type 1 224 0 500 195 8 70 chr4 88674611 88674669 -95613993 - Charlie1 DNA MER1_type -72 2689 2629 * 694 123 204 12 chr4 88674663 88674825 -95613837 - Charlie1 DNA MER1_type -2524 237 45 226 236 55 0 chr4 88674847 88674902 -95613760 + L2 LINE L2 3256 3313 0 1958 170 110 7 chr4 88675345 88675762 -95612900 - LOR1b LTR ERV1 -1 460 1 23 0 0 0 chr4 88676671 88676694 -95611968 + AT_rich Low_complexity Low_complexity 1 23 0 1584 65 23 0 chr4 88677644 88677858 -95610804 - L1PA3 LINE L1 0 6155 5937 24 77 0 0 chr4 88677858 88677910 -95610752 + AT_rich Low_complexity Low_complexity 1 52 0 3174 211 12 15 chr4 88677912 88678848 -95609814 - L1 LINE L1 -3218 4347 3412 261 98 0 24 chr4 88681111 88681152 -95607510 - AluSp SINE Alu -135 168 129 254 214 36 0 chr4 88681146 88681202 -95607460 + Charlie1a DNA MER1_type 482 539 -916 * 1611 198 3 13 chr4 88681328 88681642 -95607020 + AluJb SINE Alu 1 311 -1 3094 206 85 21 chr4 88681717 88682627 -95606035 - Charlie1a DNA MER1_type -6 1449 482 1947 121 7 4 chr4 88682629 88682910 -95605752 + AluSx SINE Alu 1 282 -30 531 100 0 0 chr4 88683027 88683107 -95605555 + Alu SINE Alu 231 310 0 1139 236 44 62 chr4 88683170 88683555 -95605107 - Charlie1a DNA MER1_type -1077 378 1 218 311 0 0 chr4 88683744 88683805 -95604857 - L2 LINE L2 -2 3311 3251 22 0 0 0 chr4 88683902 88683924 -95604738 + AT_rich Low_complexity Low_complexity 1 22 0 2021 153 31 6 chr4 88684539 88684892 -95603770 - L1PA16 LINE L1 -9 6157 5796 292 281 248 0 chr4 88685187 88685340 -95603322 - MIR SINE MIR -52 210 20 24 85 0 0 chr4 88686197 88686256 -95602406 + AT_rich Low_complexity Low_complexity 1 59 0 1030 219 72 32 chr4 88686366 88686645 -95602017 - MER63B DNA MER1_type -145 291 2 1372 176 26 65 chr4 88687111 88687452 -95601210 + MLT1B LTR MaLR 63 390 0 266 356 79 11 chr4 88691259 88691436 -95597226 + L2 LINE L2 2841 3029 -243 362 291 154 6 chr4 88691619 88691794 -95596868 + MIR SINE MIR 23 223 -39 23 0 0 0 chr4 88692150 88692173 -95596489 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr4 88692183 88692212 -95596450 + AT_rich Low_complexity Low_complexity 1 29 0 1449 158 14 18 chr4 88692284 88692563 -95596099 + L1PA16 LINE L1 5889 6166 0 273 118 0 0 chr4 88693079 88693130 -95595532 + (TG)n Simple_repeat Simple_repeat 2 52 0 26 50 0 0 chr4 88693303 88693343 -95595319 + AT_rich Low_complexity Low_complexity 1 40 0 31 44 0 0 chr4 88693911 88693956 -95594706 + AT_rich Low_complexity Low_complexity 1 45 0 12890 153 32 14 chr4 88695342 88697098 -95591564 + Tigger1 DNA MER2_type 1 1813 -605 2229 105 3 0 chr4 88697098 88697403 -95591259 - AluY SINE Alu -5 306 1 12890 153 32 14 chr4 88697403 88698017 -95590645 + Tigger1 DNA MER2_type 1813 2414 -4 746 249 107 0 chr4 88698364 88698561 -95590101 - MER20 DNA MER1_type -1 218 1 252 295 166 29 chr4 88698593 88698732 -95589930 - MIR SINE MIR -51 211 54 341 310 7 39 chr4 88699218 88699373 -95589289 + L2 LINE L2 3159 3308 -5 567 144 30 6 chr4 88699696 88699807 -95588855 - MLT1E3 LTR MaLR 0 624 434 410 236 141 29 chr4 88699806 88699994 -95588668 - MLT1E1 LTR MaLR -420 204 3 * 371 371 24 24 chr4 88700106 88700273 -95588389 + L2 LINE L2 3106 3272 0 285 312 134 29 chr4 88700343 88700619 -95588043 + L2 LINE L2 3008 3312 -1 2207 65 3 29 chr4 88705092 88705398 -95583264 - AluY SINE Alu -13 298 1 182 177 81 81 chr4 88706414 88706476 -95582186 - MIR SINE MIR -64 144 83 668 59 20 0 chr4 88706564 88706665 -95581997 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 216 0 0 0 chr4 88707254 88707278 -95581384 + (TG)n Simple_repeat Simple_repeat 2 25 0 395 314 97 82 chr4 88708195 88708459 -95580203 + L2 LINE L2 2833 3092 -221 1611 182 10 33 chr4 88708459 88708766 -95579896 + AluJo SINE Alu 1 300 -12 395 314 97 82 chr4 88708766 88708815 -95579847 + L2 LINE L2 3092 3139 -174 234 0 0 0 chr4 88708815 88708841 -95579821 + (CA)n Simple_repeat Simple_repeat 2 27 0 395 314 97 82 chr4 88708841 88709000 -95579662 + L2 LINE L2 3139 3313 0 28 29 0 0 chr4 88709105 88709140 -95579522 + AT_rich Low_complexity Low_complexity 1 35 0 25 83 0 0 chr4 88709752 88709812 -95578850 + AT_rich Low_complexity Low_complexity 1 60 0 183 204 61 41 chr4 88709812 88709861 -95578801 + L3 LINE CR1 1525 1574 -3 213 108 0 0 chr4 88710548 88710585 -95578077 + (TG)n Simple_repeat Simple_repeat 1 37 0 1827 112 0 4 chr4 88763111 88763379 -95525283 - AluSx SINE Alu -45 267 1 22 80 0 0 chr4 88764039 88764089 -95524573 + AT_rich Low_complexity Low_complexity 1 50 0 12016 154 16 7 chr4 88764804 88766839 -95521823 - Tigger1 DNA MER2_type 0 2418 366 21 0 0 0 chr4 88768279 88768300 -95520362 + AT_rich Low_complexity Low_complexity 1 21 0 1449 222 30 12 chr4 88768337 88768675 -95519987 - Tigger1 DNA MER2_type -2073 345 2 213 65 0 0 chr4 88768773 88768804 -95519858 + (TTTAA)n Simple_repeat Simple_repeat 2 32 0 2296 76 0 0 chr4 88768810 88769101 -95519561 - AluY SINE Alu -20 291 1 24 77 0 0 chr4 88770492 88770544 -95518118 + AT_rich Low_complexity Low_complexity 1 52 0 8718 96 7 6 chr4 88771429 88773450 -95515212 + L1PA7 LINE L1 4126 6149 -5 285 298 24 36 chr4 88773490 88773574 -95515088 - L2 LINE L2 -15 3257 3175 1714 95 0 0 chr4 88774229 88774461 -95514201 - AluSq SINE Alu -2 311 80 25 51 0 0 chr4 88774847 88774886 -95513776 + AT_rich Low_complexity Low_complexity 1 39 0 501 312 38 27 chr4 88775565 88775751 -95512911 + MIR3 SINE MIR 3 190 -18 428 344 188 41 chr4 88776232 88776919 -95511743 + L3 LINE CR1 386 1173 -404 189 0 0 0 chr4 88777561 88777582 -95511080 + (TA)n Simple_repeat Simple_repeat 2 22 0 224 319 11 22 chr4 88777691 88777782 -95510880 + L3 LINE CR1 1333 1422 -155 279 279 265 15 chr4 88777882 88778018 -95510644 - MIR SINE MIR -25 237 68 2144 113 3 0 chr4 88778918 88779220 -95509442 - AluSx SINE Alu -9 303 1 222 306 20 20 chr4 88779255 88779353 -95509309 + MIR SINE MIR 92 189 -73 211 256 44 0 chr4 88781394 88781484 -95507178 + (TTTG)n Simple_repeat Simple_repeat 2 95 0 250 351 219 14 chr4 88782148 88782427 -95506235 - L2 LINE L2 -337 2977 2642 3942 166 35 29 chr4 88782451 88782727 -95505935 - L1PB4 LINE L1 -8 6148 5875 2372 77 0 13 chr4 88782727 88783037 -95505625 + AluY SINE Alu 1 306 -5 3942 166 35 29 chr4 88783037 88783798 -95504864 - L1PB4 LINE L1 -281 5875 5023 1574 246 40 103 chr4 88783796 88784002 -95504660 - L1PB4 LINE L1 -2251 3895 3678 * 189 0 0 0 chr4 88784002 88784023 -95504639 + (TG)n Simple_repeat Simple_repeat 2 22 0 1574 246 40 103 chr4 88784023 88784234 -95504428 - L1PB4 LINE L1 -2468 3678 3455 491 108 14 0 chr4 88784234 88784308 -95504354 - MADE1 DNA Mariner -5 75 1 1574 246 40 103 chr4 88784308 88784657 -95504005 - L1PB4 LINE L1 -2691 3455 3108 * 2418 214 12 90 chr4 88784632 88785399 -95503263 - L1 LINE L1 -952 5194 4488 48 53 0 0 chr4 88786500 88786576 -95502086 + AT_rich Low_complexity Low_complexity 1 76 0 691 217 11 39 chr4 88787713 88787893 -95500769 + MER3 DNA MER1_type 32 206 -3 1071 114 0 0 chr4 88788795 88788944 -95499718 - AluSg/x SINE Alu -10 300 152 440 216 10 0 chr4 88789050 88789147 -95499515 + MER5A DNA MER1_type 9 106 -83 25 31 0 0 chr4 88789351 88789383 -95499279 + AT_rich Low_complexity Low_complexity 1 32 0 2031 121 7 0 chr4 88789599 88789889 -95498773 - AluSp SINE Alu -21 292 1 2085 126 3 0 chr4 88789921 88790222 -95498440 + AluSq SINE Alu 1 302 -11 806 94 0 0 chr4 88790654 88790760 -95497902 + AluY SINE Alu 195 300 -11 376 303 0 0 chr4 88791699 88791788 -95496874 - MER81 DNA DNA -22 92 4 21 0 0 0 chr4 88792035 88792056 -95496606 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 88792381 88792406 -95496256 + AT_rich Low_complexity Low_complexity 1 25 0 214 185 22 130 chr4 88792424 88792516 -95496146 - MER5A DNA MER1_type -25 164 83 1550 180 76 3 chr4 88792832 88793121 -95495541 + MER2 DNA MER2_type 11 320 -25 23 0 0 0 chr4 88796108 88796131 -95492531 + AT_rich Low_complexity Low_complexity 1 23 0 3165 130 8 4 chr4 88796596 88797110 -95491552 - L1PA13 LINE L1 -5 6158 5643 1629 158 28 22 chr4 88797110 88797427 -95491235 - THE1C LTR MaLR -4 371 53 489 239 65 13 chr4 88797497 88797652 -95491010 + L1ME3A LINE L1 5952 6114 -56 402 91 0 45 chr4 88797675 88797741 -95490921 - THE1C LTR MaLR -312 63 1 2478 151 10 9 chr4 88797741 88798484 -95490178 - L1P4 LINE L1 -512 5651 4905 41983 55 5 1 chr4 88798538 88804664 -95483998 - L1PA4 LINE L1 -5 6150 1 1410 268 49 19 chr4 88804760 88805230 -95483432 + L1ME3A LINE L1 5679 6162 -8 4922 43 3 0 chr4 88805976 88806583 -95482079 + L1PA4 LINE L1 5547 6155 0 949 200 105 12 chr4 88808849 88809164 -95479498 - MSTD LTR MaLR 0 365 3 1012 228 137 44 chr4 88809446 88809832 -95478830 - LTR40a LTR ERVL 0 519 98 1013 197 5 5 chr4 88810017 88810210 -95478452 - MER46A DNA MER2_type -43 193 1 475 237 8 25 chr4 88810210 88810313 -95478349 - LTR40b LTR ERVL -361 101 1 22 35 0 0 chr4 88810476 88810505 -95478157 + AT_rich Low_complexity Low_complexity 1 29 0 235 287 201 23 chr4 88811939 88812113 -95476549 + MIR SINE MIR 47 251 -11 340 282 27 27 chr4 88812315 88812425 -95476237 - MIR SINE MIR -122 140 31 24 32 0 0 chr4 88812556 88812587 -95476075 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr4 88812607 88812630 -95476032 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr4 88812796 88812817 -95475845 + (T)n Simple_repeat Simple_repeat 1 21 0 1358 276 88 29 chr4 88813026 88813819 -95474843 + L1ME2 LINE L1 3425 4264 -1882 189 0 0 0 chr4 88813841 88813862 -95474800 + (CA)n Simple_repeat Simple_repeat 2 22 0 1856 252 100 69 chr4 88813874 88815313 -95473349 + L1ME2 LINE L1 4667 6154 -10 191 114 29 0 chr4 88815360 88815395 -95473267 + (TA)n Simple_repeat Simple_repeat 1 36 0 2653 39 12 0 chr4 88816347 88816678 -95471984 - L1PA3 LINE L1 -1590 4556 4222 7540 28 5 0 chr4 88816678 88818263 -95470399 + L1PA3 LINE L1 4564 6152 -3 2924 207 37 47 chr4 88819076 88820051 -95468611 - L1M3 LINE L1 -693 5487 4528 1444 274 2 2 chr4 88820055 88820474 -95468188 - L1M3 LINE L1 -1988 4158 3740 38606 54 8 1 chr4 88820781 88825518 -95463144 - L1PA4 LINE L1 0 6155 1365 187 31 62 0 chr4 88825518 88825550 -95463112 + (CATTT)n Simple_repeat Simple_repeat 5 38 0 38606 54 8 1 chr4 88825550 88826912 -95461750 - L1PA4 LINE L1 -4790 1365 13 526 269 55 48 chr4 88827392 88827682 -95460980 - HAL1 LINE L1 -829 1678 1387 22 0 0 0 chr4 88828305 88828327 -95460335 + AT_rich Low_complexity Low_complexity 1 22 0 594 315 11 0 chr4 88828955 88829139 -95459523 - MER5A DNA MER1_type -3 186 1 183 129 0 0 chr4 88829916 88829947 -95458715 + (TG)n Simple_repeat Simple_repeat 2 32 0 250 209 30 0 chr4 88830132 88830199 -95458463 - L1ME LINE L1 -242 5879 5811 273 29 0 0 chr4 88831350 88831384 -95457278 + (TG)n Simple_repeat Simple_repeat 1 34 0 30 69 0 0 chr4 88831466 88831524 -95457138 + AT_rich Low_complexity Low_complexity 1 58 0 988 56 0 0 chr4 88831534 88831660 -95457002 - L1PA4 LINE L1 -6 6149 6024 1177 193 100 8 chr4 88833551 88833845 -95454817 - AluJb SINE Alu 0 318 1 847 311 76 22 chr4 88834023 88834470 -95454192 - L1MC4a LINE L1 -1902 5906 5436 1478 220 67 29 chr4 88835011 88835461 -95453201 - MLT1C LTR MaLR 0 467 1 315 213 0 0 chr4 88836419 88836499 -95452163 + (CATATA)n Simple_repeat Simple_repeat 5 84 0 2068 87 11 31 chr4 88836631 88836832 -95451830 - AluY SINE Alu 0 312 118 7722 19 0 0 chr4 88836832 88838119 -95450543 - L1PA3 LINE L1 0 6155 4868 2068 87 11 31 chr4 88838119 88838233 -95450429 - AluY SINE Alu -194 118 3 10108 206 55 40 chr4 88838293 88841703 -95446959 - L1MC1 LINE L1 -18 6595 3020 3980 74 4 2 chr4 88841703 88842232 -95446430 + L1PA7 LINE L1 5624 6153 -1 10108 206 55 40 chr4 88842232 88845101 -95443561 - L1MC1 LINE L1 -3593 3020 196 13497 155 24 16 chr4 88845105 88846555 -95442107 - Tigger1 DNA MER2_type 0 2418 942 1392 103 40 0 chr4 88846555 88846778 -95441884 + L1PA8 LINE L1 5940 6171 -1 13497 155 24 16 chr4 88846778 88847673 -95440989 - Tigger1 DNA MER2_type -1476 942 55 279 0 0 0 chr4 88847673 88847704 -95440958 + (A)n Simple_repeat Simple_repeat 1 31 0 23 0 0 0 chr4 88848680 88848703 -95439959 + GC_rich Low_complexity Low_complexity 1 23 0 306 0 0 0 chr4 88849073 88849107 -95439555 + (A)n Simple_repeat Simple_repeat 1 34 0 266 217 0 17 chr4 88849107 88849167 -95439495 - Tigger1 DNA MER2_type -2358 60 2 757 235 24 0 chr4 88849168 88849338 -95439324 - L1MC1 LINE L1 -6233 193 20 227 367 33 8 chr4 88849711 88849831 -95438831 - L2 LINE L2 -12 3301 3179 2071 154 34 3 chr4 88850089 88850440 -95438222 + THE1B LTR MaLR 1 362 -2 340 328 77 21 chr4 88850556 88850698 -95437964 - MIR SINE MIR -64 144 19 24 0 0 0 chr4 88851114 88851138 -95437524 + AT_rich Low_complexity Low_complexity 1 24 0 213 261 87 22 chr4 88851539 88851631 -95437031 + L2 LINE L2 3134 3231 -82 203 148 185 0 chr4 88851829 88851883 -95436779 - MIR SINE MIR -76 186 123 24 0 0 0 chr4 88851888 88851912 -95436750 + AT_rich Low_complexity Low_complexity 1 24 0 713 169 177 68 chr4 88852228 88852465 -95436197 - L1MB8 LINE L1 -50 6128 5866 372 245 21 0 chr4 88853150 88853244 -95435418 - MIR SINE MIR -4 258 163 290 100 0 0 chr4 88854028 88854068 -95434594 + MADE1 DNA Mariner 41 80 0 215 170 21 0 chr4 88854543 88854590 -95434072 + (CATATA)n Simple_repeat Simple_repeat 4 51 0 21 0 0 0 chr4 88854628 88854649 -95434013 + AT_rich Low_complexity Low_complexity 1 21 0 521 217 0 0 chr4 88854662 88854754 -95433908 - AluJ/FLAM SINE Alu -218 94 3 5146 154 23 10 chr4 88855032 88855955 -95432707 - L1MA5 LINE L1 0 6300 5366 3938 92 5 3 chr4 88856221 88856786 -95431876 - L1PA13 LINE L1 0 6163 5598 512 96 27 0 chr4 88856787 88856860 -95431802 + L1PA13 LINE L1 5547 5621 -542 6540 74 7 3 chr4 88857451 88858468 -95430194 + L1PA7 LINE L1 5132 6152 -2 2390 70 0 0 chr4 88858496 88858798 -95429864 + AluY SINE Alu 1 302 -9 250 270 54 39 chr4 88860514 88860633 -95428029 - MIR SINE MIR -63 145 49 1316 353 98 16 chr4 88860786 88861808 -95426854 - L2 LINE L2 -177 3136 2037 313 307 102 15 chr4 88861953 88862090 -95426572 + L2 LINE L2 3160 3308 -5 1580 183 43 7 chr4 88862370 88862671 -95425991 + AluJo SINE Alu 1 312 0 867 216 103 0 chr4 88862684 88862966 -95425696 + MER33 DNA MER1_type 3 313 -11 273 309 218 0 chr4 88863058 88863168 -95425494 + MER5A DNA MER1_type 56 189 0 23 68 0 0 chr4 88863944 88863988 -95424674 + AT_rich Low_complexity Low_complexity 1 44 0 185 324 44 0 chr4 88864584 88864652 -95424010 - MIR SINE MIR -114 148 78 315 71 0 0 chr4 88865643 88865685 -95422977 + (A)n Simple_repeat Simple_repeat 1 42 0 735 221 182 65 chr4 88866797 88867104 -95421558 - MLT1A1 LTR MaLR -22 343 1 381 350 0 8 chr4 88867585 88867702 -95420960 + MIR3 SINE MIR 69 184 -24 1043 263 138 42 chr4 88868278 88868829 -95419833 - L1MC4a LINE L1 -150 7658 7055 2127 53 0 46 chr4 88868854 88869157 -95419505 - AluY SINE Alu -22 289 1 621 244 18 0 chr4 88870186 88870350 -95418312 + L1MD3 LINE L1 7829 7995 0 26 64 0 0 chr4 88870368 88870415 -95418247 + AT_rich Low_complexity Low_complexity 1 47 0 1220 25 6 19 chr4 88871056 88871214 -95417448 + L1PA4 LINE L1 5987 6142 -13 229 148 19 19 chr4 88871214 88871263 -95417399 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 207 191 0 21 chr4 88871615 88871662 -95417000 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 1442 264 58 62 chr4 88871673 88872174 -95416488 - MLT1F1 LTR MaLR -2 565 67 2318 75 10 3 chr4 88872618 88872923 -95415739 + AluY SINE Alu 1 307 -4 225 220 33 22 chr4 88872924 88873015 -95415647 + L1MCa LINE L1 1979 2070 -4356 468 0 0 0 chr4 88873819 88873871 -95414791 + (TG)n Simple_repeat Simple_repeat 1 52 0 302 173 0 74 chr4 88873871 88873952 -95414710 + L1MC4 LINE L1 6616 6690 -1352 1522 126 83 54 chr4 88873953 88874231 -95414431 - AluSx SINE Alu -22 290 5 236 358 52 29 chr4 88874636 88874809 -95413853 - MIR SINE MIR -31 231 55 197 319 11 66 chr4 88877360 88877451 -95411211 - L2 LINE L2 0 3313 3228 1656 116 116 0 chr4 88877962 88878240 -95410422 - AluSq SINE Alu 0 311 5 634 204 221 0 chr4 88878484 88878656 -95410006 - MER63A DNA MER1_type 0 210 1 2074 137 0 16 chr4 88879628 88879942 -95408720 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr4 88879976 88879997 -95408665 + AT_rich Low_complexity Low_complexity 1 21 0 218 309 0 0 chr4 88881290 88881345 -95407317 + MIR SINE MIR 93 147 -61 * 239 297 0 77 chr4 88881332 88881423 -95407239 + MIR SINE MIR 5 88 -174 22 35 0 0 chr4 88882441 88882470 -95406192 + AT_rich Low_complexity Low_complexity 1 29 0 464 217 8 67 chr4 88882945 88883065 -95405597 - MER81 DNA DNA 0 114 2 334 320 19 0 chr4 88883383 88883486 -95405176 - L1ME LINE L1 -490 5631 5527 23 0 0 0 chr4 88883918 88883941 -95404721 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr4 88884236 88884273 -95404389 + AT_rich Low_complexity Low_complexity 1 37 0 993 125 90 50 chr4 88884376 88884576 -95404086 + L1PA16 LINE L1 5943 6150 -16 25 0 0 0 chr4 88884835 88884860 -95403802 + AT_rich Low_complexity Low_complexity 1 25 0 185 388 69 0 chr4 88885360 88885476 -95403186 - MIR SINE MIR -71 191 68 241 306 83 39 chr4 88885614 88885794 -95402868 - L1ME LINE L1 -440 5681 5494 1514 216 132 27 chr4 88886350 88886798 -95401864 - MLT1D LTR MaLR -8 497 3 257 250 14 14 chr4 88887342 88887414 -95401248 + MER103 DNA DNA 88 159 -7 515 212 8 38 chr4 88887603 88887735 -95400927 + MER46C DNA MER2_type 135 262 -76 1362 342 142 28 chr4 88887940 88889120 -95399542 + L2 LINE L2 1391 2705 -609 1547 208 30 1 chr4 88889135 88889485 -95399177 + L1MB5 LINE L1 5608 5966 -208 347 349 60 30 chr4 88889506 88889741 -95398921 + L2 LINE L2 2835 3076 -237 21 0 0 0 chr4 88890597 88890618 -95398044 + AT_rich Low_complexity Low_complexity 1 21 0 292 338 15 45 chr4 88890921 88891122 -95397540 + HAL1b LINE L1 306 500 -848 1969 133 27 0 chr4 88891381 88891674 -95396988 + AluSx SINE Alu 3 303 -9 234 156 44 0 chr4 88892075 88892120 -95396542 + CT-rich Low_complexity Low_complexity 2 48 0 180 0 0 0 chr4 88893289 88893309 -95395353 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 217 256 0 0 chr4 88893927 88893970 -95394692 + (TATATG)n Simple_repeat Simple_repeat 3 45 0 601 250 61 33 chr4 88893977 88894157 -95394505 - MER21B LTR ERV1 -328 535 351 244 326 109 31 chr4 88894198 88894492 -95394170 - HAL1b LINE L1 -863 485 169 23 0 0 0 chr4 88894712 88894735 -95393927 + AT_rich Low_complexity Low_complexity 1 23 0 204 140 20 40 chr4 88894741 88894791 -95393871 + T-rich Low_complexity Low_complexity 5 53 0 1140 269 20 35 chr4 88894926 88895268 -95393394 - MER21B LTR ERV1 -526 337 1 268 222 0 28 chr4 88896470 88896542 -95392120 + (TA)n Simple_repeat Simple_repeat 1 70 0 585 152 0 0 chr4 88897764 88897856 -95390806 - MLT1A1 LTR MaLR 0 365 274 436 228 10 0 chr4 88897860 88897961 -95390701 - MLT1A1 LTR MaLR -272 102 1 182 40 0 0 chr4 88898103 88898128 -95390534 + L3b LINE CR1 1256 1280 -303 578 316 52 17 chr4 88898958 88899189 -95389473 + MIR SINE MIR 1 239 -23 199 227 167 0 chr4 88899200 88899266 -95389396 - MIR SINE MIR -37 225 149 273 29 0 0 chr4 88899671 88899705 -95388957 + (TG)n Simple_repeat Simple_repeat 2 35 0 200 354 20 0 chr4 88899724 88899823 -95388839 - L2 LINE L2 -1609 1705 1605 248 308 0 0 chr4 88899965 88900030 -95388632 - MIR SINE MIR -10 252 188 1600 153 66 33 chr4 88901152 88901453 -95387209 + AluSx SINE Alu 1 311 -1 198 191 0 0 chr4 88902818 88902860 -95385802 + (CATATA)n Simple_repeat Simple_repeat 5 46 0 347 134 90 0 chr4 88903438 88903505 -95385157 + L1MA4 LINE L1 6222 6294 -6 600 296 12 12 chr4 88903554 88903726 -95384936 + MIR SINE MIR 6 177 -85 2117 104 10 10 chr4 88904371 88904678 -95383984 + AluSx SINE Alu 1 307 -5 31 88 0 0 chr4 88905001 88905081 -95383581 + AT_rich Low_complexity Low_complexity 1 80 0 44 56 0 0 chr4 88905141 88905213 -95383449 + AT_rich Low_complexity Low_complexity 1 72 0 376 167 77 6 chr4 88905221 88905451 -95383211 + (TA)n Simple_repeat Simple_repeat 1 246 0 30 59 0 0 chr4 88905465 88905516 -95383146 + AT_rich Low_complexity Low_complexity 1 51 0 352 113 0 0 chr4 88905574 88905627 -95383035 + MADE1 DNA Mariner 1 53 -27 210 241 0 0 chr4 88905750 88905804 -95382858 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 204 158 0 0 chr4 88905811 88905849 -95382813 + (CA)n Simple_repeat Simple_repeat 1 38 0 231 264 9 82 chr4 88906003 88906113 -95382549 - L1MC/D LINE L1 -2012 5796 5695 474 49 0 0 chr4 88906714 88906775 -95381887 + (TG)n Simple_repeat Simple_repeat 2 62 0 348 260 77 10 chr4 88906974 88907078 -95381584 - MER103 DNA DNA -43 123 13 21 36 0 0 chr4 88908202 88908230 -95380432 + AT_rich Low_complexity Low_complexity 1 28 0 386 254 53 0 chr4 88908240 88908354 -95380308 + L1ME2 LINE L1 6044 6163 -1 223 226 32 48 chr4 88908646 88908708 -95379954 + L2 LINE L2 3252 3312 -1 242 161 0 36 chr4 88908731 88908787 -95379875 + GA-rich Low_complexity Low_complexity 2 55 0 24 32 0 0 chr4 88909231 88909262 -95379400 + AT_rich Low_complexity Low_complexity 1 31 0 28 71 0 0 chr4 88911507 88911563 -95377099 + AT_rich Low_complexity Low_complexity 1 56 0 527 298 30 0 chr4 88911692 88911823 -95376839 - L2 LINE L2 0 3272 3138 241 370 37 7 chr4 88911966 88912101 -95376561 - L2 LINE L2 -377 2937 2799 226 137 0 219 chr4 88912222 88912295 -95376367 - L1MA5 LINE L1 -48 6252 6196 427 284 20 0 chr4 88912296 88912398 -95376264 + MER45A DNA AcHobo 61 164 -14 229 316 0 0 chr4 88913850 88913907 -95374755 + polypyrimidine Low_complexity Low_complexity 4 60 0 2033 147 0 0 chr4 88914005 88914305 -95374357 - AluSx SINE Alu -12 300 1 195 181 29 38 chr4 88914406 88914511 -95374151 + GA-rich Low_complexity Low_complexity 5 108 0 2119 109 0 29 chr4 88914653 88914964 -95373698 - AluSg SINE Alu -8 302 1 2114 106 75 29 chr4 88915088 88915436 -95373226 + THE1B LTR MaLR 1 364 0 1254 268 38 26 chr4 88916814 88917182 -95371480 - MER77 LTR ERV1 -4 601 253 1551 172 3 29 chr4 88918725 88919033 -95369629 - AluSx SINE Alu -12 300 1 1147 289 71 43 chr4 88919050 88919604 -95369058 - MLT1F1 LTR MaLR 0 567 1 32 67 0 0 chr4 88920092 88920152 -95368510 + AT_rich Low_complexity Low_complexity 1 60 0 6580 92 2 20 chr4 88920959 88921939 -95366723 - L1P LINE L1 -893 5253 4292 6673 56 0 15 chr4 88921939 88922128 -95366534 + L1PA7 LINE L1 5299 5489 -665 2404 74 0 3 chr4 88922128 88922425 -95366237 + AluY SINE Alu 1 296 -15 6673 56 0 15 chr4 88922425 88923091 -95365571 + L1PA7 LINE L1 5489 6145 -9 223 137 20 20 chr4 88923091 88923142 -95365520 + (TA)n Simple_repeat Simple_repeat 1 51 0 302 195 346 13 chr4 88923335 88923494 -95365168 + MIR SINE MIR 40 251 -11 23 0 0 0 chr4 88924720 88924743 -95363919 + AT_rich Low_complexity Low_complexity 1 23 0 325 100 20 0 chr4 88925445 88925495 -95363167 + MADE1 DNA Mariner 4 54 -26 2214 94 0 3 chr4 88925537 88925825 -95362837 - AluY SINE Alu -24 287 1 33 0 0 0 chr4 88925837 88925870 -95362792 + AT_rich Low_complexity Low_complexity 1 33 0 456 19 0 0 chr4 88925870 88925923 -95362739 + (TC)n Simple_repeat Simple_repeat 2 54 0 180 0 0 0 chr4 88925922 88925942 -95362720 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 412 71 0 0 chr4 88925943 88925999 -95362663 + L1PA6 LINE L1 6086 6141 -13 227 177 113 0 chr4 88926001 88926063 -95362599 - L1MC4 LINE L1 -1340 6702 6634 243 231 0 0 chr4 88926230 88926295 -95362367 + CT-rich Low_complexity Low_complexity 2 66 0 1667 52 4 26 chr4 88926557 88926789 -95361873 + L1PA5 LINE L1 5921 6147 -7 24 0 0 0 chr4 88926789 88926813 -95361849 + AT_rich Low_complexity Low_complexity 1 24 0 2614 189 188 15 chr4 88929687 88930337 -95358325 + L1MC3 LINE L1 7004 7752 -33 27 0 0 0 chr4 88932457 88932484 -95356178 + AT_rich Low_complexity Low_complexity 1 27 0 461 17 17 0 chr4 88933379 88933437 -95355225 + (TG)n Simple_repeat Simple_repeat 1 59 0 259 351 14 29 chr4 88934362 88934503 -95354159 - MIR SINE MIR -58 150 45 23 33 0 0 chr4 88935028 88935058 -95353604 + AT_rich Low_complexity Low_complexity 1 30 0 1537 182 43 40 chr4 88935200 88935547 -95353115 - MER7A DNA MER2_type 0 346 1 657 294 44 0 chr4 88936019 88936199 -95352463 + MER5A DNA MER1_type 1 188 -1 1035 16 16 16 chr4 88938271 88938424 -95350238 + L1PA3 LINE L1 6026 6155 0 345 62 0 0 chr4 88940008 88940056 -95348606 + (TG)n Simple_repeat Simple_repeat 2 49 0 292 259 12 24 chr4 88940308 88940393 -95348269 - MLT1L LTR MaLR -216 399 316 21 0 0 0 chr4 88941008 88941029 -95347633 + AT_rich Low_complexity Low_complexity 1 21 0 36 53 0 0 chr4 88941598 88941655 -95347007 + AT_rich Low_complexity Low_complexity 1 57 0 779 236 47 19 chr4 88942207 88942419 -95346243 - MER20 DNA MER1_type -1 218 1 1896 152 0 0 chr4 88943688 88944012 -95344650 + AluSx SINE Alu 1 324 0 335 255 25 50 chr4 88944285 88944406 -95344256 - MLT1H LTR MaLR -273 161 51 23 0 0 0 chr4 88946870 88946893 -95341769 + AT_rich Low_complexity Low_complexity 1 23 0 241 114 0 0 chr4 88947018 88947053 -95341609 + MADE1 DNA Mariner 1 35 -45 22 0 0 0 chr4 88947962 88947984 -95340678 + AT_rich Low_complexity Low_complexity 1 22 0 822 305 37 29 chr4 88948766 88949012 -95339650 - MIR SINE MIR 0 262 15 390 304 11 0 chr4 88949369 88949461 -95339201 - Tigger7 DNA MER2_type 0 2491 2399 2544 184 46 25 chr4 88949525 88950002 -95338660 - Tigger7 DNA MER2_type -2000 487 1 1274 174 113 58 chr4 88950149 88950442 -95338220 - MLT1A1 LTR MaLR -2 363 55 770 165 5 124 chr4 88950551 88950745 -95337917 - AluJo SINE Alu -141 171 1 616 267 50 30 chr4 88950766 88950968 -95337694 + MIR SINE MIR 54 259 -3 260 312 64 8 chr4 88951354 88951479 -95337183 + MIR SINE MIR 126 257 -5 2742 10 0 0 chr4 88951576 88951875 -95336787 + AluY SINE Alu 13 311 0 578 239 58 0 chr4 88951927 88952065 -95336597 + MER20 DNA MER1_type 74 219 0 183 262 0 0 chr4 88952408 88952450 -95336212 - L2 LINE L2 -2 3311 3270 2610 144 14 0 chr4 88953489 88953911 -95334751 - MSTA LTR MaLR 0 428 1 283 212 24 0 chr4 88953926 88954011 -95334651 + (TA)n Simple_repeat Simple_repeat 2 88 0 313 352 19 37 chr4 88954390 88954552 -95334110 - MIR3 SINE MIR -27 181 23 185 231 26 0 chr4 88955630 88955669 -95332993 - L2 LINE L2 -9 3263 3224 675 285 153 21 chr4 88956009 88956342 -95332320 - L2 LINE L2 -2 3311 2935 21 57 0 0 chr4 88956534 88956569 -95332093 + AT_rich Low_complexity Low_complexity 1 35 0 3715 153 49 43 chr4 88956926 88957663 -95330999 + Tigger2 DNA MER2_type 4 744 -1974 1160 202 58 0 chr4 88957728 88957971 -95330691 + Tigger2 DNA MER2_type 2451 2707 -11 1797 245 124 29 chr4 88958104 88958870 -95329792 + L1MCc LINE L1 697 1535 -4888 * 2605 241 48 20 chr4 88958865 88960230 -95328432 + L1M4 LINE L1 2979 4543 -1603 24 0 0 0 chr4 88961884 88961908 -95326754 + AT_rich Low_complexity Low_complexity 1 24 0 208 237 34 17 chr4 88962386 88962445 -95326217 - L2 LINE L2 -243 3070 3011 1754 142 59 9 chr4 88962484 88962822 -95325840 + THE1C LTR MaLR 1 355 -20 1595 162 59 101 chr4 88962834 88963241 -95325421 - MLT1B LTR MaLR 0 390 1 180 234 195 26 chr4 88963241 88963318 -95325344 - L2 LINE L2 -894 2420 2331 726 287 32 5 chr4 88963382 88963598 -95325064 - MIR SINE MIR -25 237 16 259 321 86 0 chr4 88963735 88963816 -95324846 - L2 LINE L2 -44 3228 3141 302 317 118 11 chr4 88963951 88964137 -95324525 - L2 LINE L2 -218 3054 2849 342 80 0 0 chr4 88965260 88965310 -95323352 + (TG)n Simple_repeat Simple_repeat 1 50 0 29 0 0 0 chr4 88965408 88965437 -95323225 + AT_rich Low_complexity Low_complexity 1 29 0 192 40 0 0 chr4 88965581 88965606 -95323056 + (CA)n Simple_repeat Simple_repeat 2 26 0 2080 128 42 31 chr4 88965756 88966116 -95322546 - THE1B LTR MaLR 0 364 1 681 202 8 2 chr4 88966946 88967197 -95321465 - MER82 DNA MER2_type -360 293 3 308 290 9 9 chr4 88967221 88967328 -95321334 - HAL1 LINE L1 -865 1642 1536 1922 245 52 14 chr4 88967599 88968185 -95320477 - MER82 DNA MER2_type 0 653 6 926 117 26 13 chr4 88970034 88970180 -95318482 - L1P LINE L1 -790 5356 5206 5820 63 1 42 chr4 88970180 88970856 -95317806 + L1PA8 LINE L1 5392 6033 -139 2402 77 0 0 chr4 88970856 88971156 -95317506 + AluY SINE Alu 3 302 -9 5820 63 1 42 chr4 88971156 88971289 -95317373 + L1PA8 LINE L1 6033 6170 -2 1708 238 136 30 chr4 88971408 88972131 -95316531 - L1ME3A LINE L1 -39 6131 5333 667 266 87 21 chr4 88972156 88972491 -95316171 - L1ME3A LINE L1 -856 5290 4934 198 0 0 0 chr4 88973073 88973095 -95315567 + (T)n Simple_repeat Simple_repeat 1 22 0 192 241 63 51 chr4 88973636 88973715 -95314947 - L2 LINE L2 0 3313 3234 21 0 0 0 chr4 88974043 88974064 -95314598 + AT_rich Low_complexity Low_complexity 1 21 0 1390 30 0 0 chr4 88974139 88974303 -95314359 + L1HS LINE L1 5992 6155 0 26 50 0 0 chr4 88975563 88975603 -95313059 + AT_rich Low_complexity Low_complexity 1 40 0 698 203 58 0 chr4 88976579 88976717 -95311945 - MER20 DNA MER1_type 0 219 74 2488 34 17 0 chr4 88976769 88977064 -95311598 - AluY SINE Alu 0 311 12 655 258 16 5 chr4 88977297 88977483 -95311179 - L1MC4a LINE L1 0 7808 7621 216 0 0 0 chr4 88977488 88977512 -95311150 + (T)n Simple_repeat Simple_repeat 1 24 0 894 215 4 57 chr4 88977640 88977889 -95310773 + AluJo SINE Alu 79 314 0 23 0 0 0 chr4 88978889 88978912 -95309750 + AT_rich Low_complexity Low_complexity 1 23 0 210 37 0 0 chr4 88979178 88979205 -95309457 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1584 191 0 14 chr4 88979993 88980287 -95308375 + AluJb SINE Alu 6 295 -17 212 246 0 18 chr4 88980504 88980561 -95308101 + L2 LINE L2 3175 3230 -83 2170 119 0 0 chr4 88980976 88981279 -95307383 - AluSc SINE Alu -3 306 4 21 36 0 0 chr4 88981355 88981383 -95307279 + AT_rich Low_complexity Low_complexity 1 28 0 52 0 0 0 chr4 88981405 88981457 -95307205 + AT_rich Low_complexity Low_complexity 1 52 0 802 157 0 13 chr4 88981457 88981610 -95307052 - L1MA4 LINE L1 -1 6299 6149 23 33 0 0 chr4 88981885 88981915 -95306747 + AT_rich Low_complexity Low_complexity 1 30 0 212 328 64 32 chr4 88981980 88982105 -95306557 + L2 LINE L2 3173 3301 -12 206 162 0 0 chr4 88983858 88983895 -95304767 + L2 LINE L2 2609 2645 -669 483 286 138 24 chr4 88985832 88986042 -95302620 - MIR SINE MIR -28 234 1 423 0 0 0 chr4 88986063 88986110 -95302552 + (TG)n Simple_repeat Simple_repeat 2 48 0 369 0 0 0 chr4 88987733 88987774 -95300888 + (TG)n Simple_repeat Simple_repeat 2 42 0 22 35 0 0 chr4 88987968 88987997 -95300665 + AT_rich Low_complexity Low_complexity 1 29 0 1866 173 0 7 chr4 88988930 88989237 -95299425 + AluJb SINE Alu 1 305 -7 230 322 48 34 chr4 88990028 88990174 -95298488 + L2 LINE L2 2686 2833 -481 456 289 61 49 chr4 88990244 88990507 -95298155 - LTR33 LTR ERVL 0 521 256 336 64 0 0 chr4 88990939 88990986 -95297676 + (CA)n Simple_repeat Simple_repeat 2 48 0 185 302 38 0 chr4 88991538 88991591 -95297071 - MER5A DNA MER1_type -74 115 61 737 194 57 10 chr4 88991592 88991818 -95296844 - L1PA16 LINE L1 0 6166 5900 1773 202 24 87 chr4 88991901 88991983 -95296679 - MLT1D LTR MaLR 0 505 419 7541 30 2 0 chr4 88991983 88993210 -95295452 - L1PA3 LINE L1 -3 6152 4925 1773 202 24 87 chr4 88993210 88993666 -95294996 - MLT1D LTR MaLR -86 419 1 1760 127 91 4 chr4 88994019 88994294 -95294368 - AluSx SINE Alu -11 301 3 1434 134 183 0 chr4 88994875 88995121 -95293541 - AluSx SINE Alu -21 291 1 226 351 191 22 chr4 88995211 88995706 -95292956 + L2 LINE L2 2726 3313 0 2260 105 0 3 chr4 88995952 88996257 -95292405 - AluSg SINE Alu -6 304 1 319 264 0 23 chr4 88996280 88996367 -95292295 - MER5B DNA MER1_type -93 85 1 24 0 0 0 chr4 88999029 88999053 -95289609 + AT_rich Low_complexity Low_complexity 1 24 0 208 237 34 17 chr4 88999531 88999590 -95289072 - L2 LINE L2 -243 3070 3011 1754 142 59 9 chr4 88999629 88999967 -95288695 + THE1C LTR MaLR 1 355 -20 1595 162 59 101 chr4 88999979 89000386 -95288276 - MLT1B LTR MaLR 0 390 1 180 234 195 26 chr4 89000386 89000463 -95288199 - L2 LINE L2 -894 2420 2331 726 287 32 5 chr4 89000527 89000743 -95287919 - MIR SINE MIR -25 237 16 259 321 86 0 chr4 89000880 89000961 -95287701 - L2 LINE L2 -44 3228 3141 302 317 118 11 chr4 89001096 89001282 -95287380 - L2 LINE L2 -218 3054 2849 336 64 0 0 chr4 89002405 89002452 -95286210 + (TG)n Simple_repeat Simple_repeat 2 48 0 21 36 0 0 chr4 89002544 89002572 -95286090 + AT_rich Low_complexity Low_complexity 1 28 0 483 351 91 19 chr4 89003044 89003363 -95285299 - LTR16A LTR ERVL -6 444 103 220 385 95 40 chr4 89004236 89004384 -95284278 + MIR3 SINE MIR 2 157 -51 309 246 119 40 chr4 89004635 89004777 -95283885 + L1M4 LINE L1 4254 4383 -1763 282 56 0 0 chr4 89004777 89004813 -95283849 + (CA)n Simple_repeat Simple_repeat 1 36 0 309 246 119 40 chr4 89004813 89004947 -95283715 + L1M4 LINE L1 4383 4552 -1594 723 246 82 48 chr4 89005382 89005735 -95282927 + LTR52 LTR ERVL 3 367 -54 21 57 0 0 chr4 89005960 89005995 -95282667 + AT_rich Low_complexity Low_complexity 1 35 0 1084 243 111 22 chr4 89006449 89006811 -95281851 + MSTD LTR MaLR 1 394 -2 5574 250 47 50 chr4 89006815 89007424 -95281238 + MSTD-int LTR MaLR 2 611 -1124 1846 120 40 4 chr4 89007424 89007698 -95280964 + AluSc SINE Alu 4 287 -22 5574 250 47 50 chr4 89007698 89008826 -95279836 + MSTD-int LTR MaLR 611 1735 0 1038 242 128 25 chr4 89008826 89009185 -95279477 + MSTD LTR MaLR 1 396 0 1795 157 29 13 chr4 89012242 89012548 -95276114 - AluJo SINE Alu -1 311 1 182 289 0 0 chr4 89012550 89012595 -95276067 + L3b LINE CR1 1447 1491 -92 722 294 23 23 chr4 89013431 89013649 -95275013 - MIR SINE MIR 0 262 45 9125 145 29 8 chr4 89014086 89015616 -95273046 - Tigger1 DNA MER2_type -77 2341 781 682 164 29 14 chr4 89016493 89016633 -95272029 + MER5A DNA MER1_type 47 188 -1 203 241 24 84 chr4 89017168 89017251 -95271411 - L2 LINE L2 0 3313 3236 230 357 66 28 chr4 89017342 89017555 -95271107 - MIR SINE MIR -31 231 11 207 0 0 0 chr4 89018136 89018159 -95270503 + (A)n Simple_repeat Simple_repeat 1 23 0 2140 119 0 0 chr4 89018230 89018532 -95270130 + AluSg SINE Alu 1 302 -8 5533 43 9 3 chr4 89019379 89020070 -95268592 - L1PA6 LINE L1 -4 6150 5456 362 273 87 68 chr4 89020092 89020459 -95268203 - HAL1 LINE L1 -1 2506 2133 1830 186 25 25 chr4 89020459 89020824 -95267838 - MLT1A1 LTR MaLR 0 365 1 6524 208 72 38 chr4 89020824 89020902 -95267760 - MLT1A1-int LTR MaLR 0 1735 1661 1858 162 7 10 chr4 89020902 89021205 -95267457 - AluSx SINE Alu -9 303 2 6524 208 72 38 chr4 89021205 89022804 -95265858 - MLT1A1-int LTR MaLR -74 1661 1 1746 205 8 24 chr4 89022804 89023175 -95265487 - MLT1A1 LTR MaLR 0 365 1 388 0 39 0 chr4 89023367 89023419 -95265243 + (CA)n Simple_repeat Simple_repeat 1 54 0 21 36 0 0 chr4 89023653 89023681 -95264981 + AT_rich Low_complexity Low_complexity 1 28 0 23 78 0 0 chr4 89024485 89024536 -95264126 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr4 89024706 89024728 -95263934 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 89025066 89025094 -95263568 + AT_rich Low_complexity Low_complexity 1 28 0 25 75 0 0 chr4 89025107 89025160 -95263502 + AT_rich Low_complexity Low_complexity 1 53 0 2164 100 7 23 chr4 89026065 89026375 -95262287 + AluSq SINE Alu 3 307 -6 2809 64 13 11 chr4 89026886 89027260 -95261402 + THE1C LTR MaLR 1 375 0 242 276 41 51 chr4 89028177 89028275 -95260387 + L2 LINE L2 3155 3251 -21 864 206 27 0 chr4 89028352 89028536 -95260126 + MER5A DNA MER1_type 1 189 0 953 270 29 22 chr4 89028782 89029093 -95259569 - LTR16C LTR ERVL 0 491 179 242 231 0 106 chr4 89030772 89030876 -95257786 + MIR SINE MIR 166 258 -4 307 320 163 6 chr4 89030988 89031160 -95257502 - MIR SINE MIR -18 244 46 26 0 0 0 chr4 89031321 89031347 -95257315 + AT_rich Low_complexity Low_complexity 1 26 0 685 296 161 23 chr4 89031505 89031890 -95256772 - L2 LINE L2 -20 3293 2856 2550 11 0 0 chr4 89033649 89033964 -95254698 + AluY SINE Alu 1 315 0 298 323 199 0 chr4 89034330 89034491 -95254171 - MIR SINE MIR -65 197 5 21 57 0 0 chr4 89034519 89034554 -95254108 + AT_rich Low_complexity Low_complexity 1 35 0 305 333 10 0 chr4 89034558 89034657 -95254005 - MER103 DNA DNA -64 102 3 4176 29 0 0 chr4 89035986 89036477 -95252185 - L1P2 LINE L1 -345 5810 5320 569 68 0 0 chr4 89036477 89036592 -95252070 + L1PA4 LINE L1 6065 6179 0 971 185 32 36 chr4 89037232 89037491 -95251171 - MLT1J2 LTR MaLR -187 259 1 21 0 0 0 chr4 89038648 89038669 -95249993 + AT_rich Low_complexity Low_complexity 1 21 0 1310 67 0 0 chr4 89038754 89038919 -95249743 - L1PA4 LINE L1 -163 5992 5828 1435 220 30 7 chr4 89039173 89039478 -95249184 + AluJo SINE Alu 1 312 0 22 0 0 0 chr4 89040060 89040082 -95248580 + AT_rich Low_complexity Low_complexity 1 22 0 506 274 118 28 chr4 89040333 89040545 -95248117 + MIR SINE MIR 31 261 -1 2014 132 0 0 chr4 89042391 89042700 -95245962 + AluSx SINE Alu 2 310 0 1256 224 37 22 chr4 89042703 89043025 -95245637 + L1MD2 LINE L1 5468 5794 -565 1160 215 111 20 chr4 89043025 89043378 -95245284 - MLT1B LTR MaLR 0 390 6 2110 223 58 10 chr4 89043421 89043919 -95244743 + L1MD2 LINE L1 5836 6357 -2 1540 167 42 11 chr4 89043937 89044224 -95244438 + AluJo SINE Alu 1 296 -16 252 143 0 0 chr4 89044406 89044448 -95244214 + (TTCC)n Simple_repeat Simple_repeat 4 45 0 2165 112 0 3 chr4 89045245 89045550 -95243112 - AluSg SINE Alu -6 304 1 1159 305 150 26 chr4 89046283 89047151 -95241511 - L2 LINE L2 -77 3236 2243 1772 170 0 7 chr4 89047477 89047771 -95240891 + AluSq SINE Alu 1 292 -21 28 29 0 0 chr4 89048086 89048121 -95240541 + AT_rich Low_complexity Low_complexity 1 35 0 531 160 0 0 chr4 89048360 89048454 -95240208 + CT-rich Low_complexity Low_complexity 1 94 0 1663 172 7 33 chr4 89048454 89048757 -95239905 - AluSx SINE Alu -17 295 1 713 223 37 34 chr4 89048814 89049083 -95239579 - L1MC5 LINE L1 -219 7742 7473 251 319 203 26 chr4 89049140 89049450 -95239212 + L3 LINE CR1 1096 1460 -117 632 289 96 17 chr4 89051506 89051745 -95236917 - MIR SINE MIR -3 259 2 788 157 0 0 chr4 89053108 89053223 -95235439 + FLAM_C SINE Alu 4 118 -15 497 57 0 14 chr4 89053242 89053312 -95235350 + (TA)n Simple_repeat Simple_repeat 1 69 0 268 227 10 93 chr4 89053312 89053403 -95235259 - L1ME4a LINE L1 -62 6059 5977 430 257 257 0 chr4 89055760 89055896 -95232766 - MER5A DNA MER1_type -5 184 14 1205 236 22 18 chr4 89058684 89058959 -95229703 + MER45B DNA AcHobo 65 340 -700 * 2143 209 47 8 chr4 89058949 89059460 -95229202 + MER45B DNA AcHobo 510 1040 0 539 346 95 33 chr4 89059785 89060354 -95228308 + L2 LINE L2 2156 2759 -555 272 226 0 32 chr4 89060481 89060543 -95228119 - MIR SINE MIR -28 234 175 1834 160 9 6 chr4 89060543 89060881 -95227781 - L1MA3 LINE L1 0 6305 5967 290 169 119 0 chr4 89062729 89062788 -95225874 - tRNA-Glu-GAG tRNA tRNA -9 66 1 226 24 24 48 chr4 89063032 89063039 -95225623 + (TTTTTG)n Simple_repeat Simple_repeat 2 8 -34 207 0 0 0 chr4 89063039 89063062 -95225600 + (TGG)n Simple_repeat Simple_repeat 1 23 0 226 24 24 48 chr4 89063062 89063096 -95225566 + (TTTTTG)n Simple_repeat Simple_repeat 8 42 0 21 0 0 0 chr4 89063224 89063245 -95225417 + AT_rich Low_complexity Low_complexity 1 21 0 705 140 0 0 chr4 89063881 89063995 -95224667 + L1MB1 LINE L1 6054 6167 -1 392 289 50 19 chr4 89064229 89064388 -95224274 - MLT1J1 LTR MaLR -281 165 2 261 303 116 42 chr4 89064661 89064902 -95223760 - L3 LINE CR1 -747 830 572 2103 114 26 7 chr4 89065609 89065915 -95222747 - AluSx SINE Alu 0 312 1 250 389 61 27 chr4 89066497 89066793 -95221869 - L3 LINE CR1 -24 1553 1248 419 315 0 8 chr4 89066824 89066951 -95221711 + AluJb SINE Alu 1 126 -176 498 249 196 16 chr4 89066997 89067186 -95221476 - AluJo SINE Alu -83 229 7 200 327 73 45 chr4 89067686 89067796 -95220866 - MER5A DNA MER1_type -34 155 43 212 239 0 71 chr4 89067931 89068086 -95220576 + A-rich Low_complexity Low_complexity 4 147 0 346 333 26 0 chr4 89068842 89068956 -95219706 - L2 LINE L2 -5 3308 3192 241 373 68 0 chr4 89069396 89069514 -95219148 - MIR SINE MIR -94 168 43 307 324 10 39 chr4 89069639 89069741 -95218921 - L2 LINE L2 0 3272 3174 228 357 57 0 chr4 89070774 89070844 -95217818 + L2 LINE L2 3240 3313 0 22 56 0 0 chr4 89070958 89070994 -95217668 + AT_rich Low_complexity Low_complexity 1 36 0 280 176 29 0 chr4 89071031 89071099 -95217563 + CT-rich Low_complexity Low_complexity 2 71 0 294 29 0 0 chr4 89071805 89071840 -95216822 + (TG)n Simple_repeat Simple_repeat 1 35 0 1419 151 18 115 chr4 89071898 89072272 -95216390 + AluSq SINE Alu 2 343 0 323 309 0 12 chr4 89072334 89072415 -95216247 - L2 LINE L2 0 3313 3234 294 392 0 0 chr4 89072523 89072653 -95216009 - L2 LINE L2 -312 3001 2872 21 0 0 0 chr4 89072893 89072914 -95215748 + AT_rich Low_complexity Low_complexity 1 21 0 401 294 73 7 chr4 89073172 89073308 -95215354 + MIR SINE MIR 17 161 -101 774 190 92 0 chr4 89073435 89073598 -95215064 + MER5A DNA MER1_type 2 179 -10 882 289 139 15 chr4 89074499 89074838 -95213824 + LTR40a LTR ERVL 139 519 0 1317 248 52 6 chr4 89075006 89075353 -95213309 + MLT1A1 LTR MaLR 3 365 0 1245 188 132 4 chr4 89075394 89075660 -95213002 - AluJb SINE Alu -2 300 1 21 0 0 0 chr4 89076575 89076596 -95212066 + AT_rich Low_complexity Low_complexity 1 21 0 448 321 84 9 chr4 89077173 89077388 -95211274 + MIR SINE MIR 1 231 -31 184 400 20 0 chr4 89077889 89077989 -95210673 - MIR SINE MIR -108 154 53 191 59 0 29 chr4 89078013 89078047 -95210615 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 5559 124 34 14 chr4 89078051 89079497 -95209165 - L1PA13 LINE L1 -19 6144 4686 501 104 0 3 chr4 89079427 89079504 -95209158 - L1P LINE L1 -1391 4755 4681 21 36 0 0 chr4 89079664 89079692 -95208970 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 89080055 89080076 -95208586 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr4 89080263 89080299 -95208363 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr4 89080319 89080356 -95208306 + AT_rich Low_complexity Low_complexity 1 37 0 2235 110 7 0 chr4 89081705 89082013 -95206649 - AluSq SINE Alu -3 310 1 260 341 62 8 chr4 89083946 89084075 -95204587 + MIR SINE MIR 126 261 -1 263 160 0 0 chr4 89085215 89085265 -95203397 + MER4-int LTR ERV1 1112 1161 -5437 1607 171 7 37 chr4 89087160 89087459 -95201203 + AluJb SINE Alu 1 290 -22 2084 140 77 3 chr4 89087663 89088012 -95200650 - THE1C LTR MaLR 0 375 1 349 287 158 29 chr4 89089087 89089296 -95199366 + L3 LINE CR1 259 494 -1083 1012 319 154 10 chr4 89089715 89090327 -95198335 + L3 LINE CR1 585 1284 -293 184 373 0 0 chr4 89091012 89091079 -95197583 - L2 LINE L2 -1 3312 3246 27 0 0 0 chr4 89091387 89091414 -95197248 + AT_rich Low_complexity Low_complexity 1 27 0 970 50 0 0 chr4 89091414 89091535 -95197127 - L1PA5 LINE L1 -8 6146 6026 21 36 0 0 chr4 89091814 89091842 -95196820 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 89092059 89092087 -95196575 + AT_rich Low_complexity Low_complexity 1 28 0 223 146 24 0 chr4 89092289 89092330 -95196332 - L2 LINE L2 0 3313 3272 182 324 113 78 chr4 89092521 89092752 -95195910 - L2 LINE L2 -341 2973 2751 2199 119 0 0 chr4 89092752 89093081 -95195581 - AluSx SINE Alu 0 329 1 182 324 113 78 chr4 89093081 89093370 -95195292 - L2 LINE L2 -563 2751 2434 211 250 0 0 chr4 89093972 89094016 -95194646 + (TA)n Simple_repeat Simple_repeat 1 44 0 22 56 0 0 chr4 89094664 89094700 -95193962 + AT_rich Low_complexity Low_complexity 1 36 0 566 319 106 0 chr4 89096373 89096599 -95192063 - MIR SINE MIR -1 261 12 23 68 0 0 chr4 89096694 89096738 -95191924 + AT_rich Low_complexity Low_complexity 1 44 0 256 333 83 23 chr4 89097508 89097640 -95191022 + MIR3 SINE MIR 44 183 -25 25 51 0 0 chr4 89098199 89098238 -95190424 + AT_rich Low_complexity Low_complexity 1 39 0 331 168 0 58 chr4 89098564 89098754 -95189908 + (TA)n Simple_repeat Simple_repeat 2 180 0 342 45 0 0 chr4 89098767 89098811 -95189851 + (TCTA)n Simple_repeat Simple_repeat 4 47 0 844 293 97 31 chr4 89099306 89100247 -95188415 - L1ME3A LINE L1 -222 5948 4944 332 241 64 49 chr4 89100307 89100571 -95188091 - L1ME3 LINE L1 -77 6085 5782 332 274 102 10 chr4 89100577 89100774 -95187888 - L1ME3 LINE L1 -1769 4377 4163 629 354 51 58 chr4 89101300 89102046 -95186616 - L2 LINE L2 -1598 1716 976 206 198 0 66 chr4 89103929 89104111 -95184551 + (TTAA)n Simple_repeat Simple_repeat 4 173 0 382 289 134 0 chr4 89104536 89104678 -95183984 + L2 LINE L2 3153 3313 0 400 305 20 69 chr4 89105067 89105270 -95183392 + MIR SINE MIR 12 204 -58 2372 100 0 0 chr4 89105745 89106056 -95182606 + AluY SINE Alu 1 311 0 2336 169 16 112 chr4 89106665 89107239 -95181423 + MLT2B1 LTR ERVL 1 519 -1 3729 103 0 4 chr4 89108511 89109052 -95179610 - L1P LINE L1 -1193 4953 4415 6871 63 8 0 chr4 89109052 89109939 -95178723 + L1PA7 LINE L1 5254 6150 -4 458 182 36 6 chr4 89110076 89110241 -95178421 + (TA)n Simple_repeat Simple_repeat 1 170 0 3610 104 69 7 chr4 89110943 89111511 -95177151 - L1PA12 LINE L1 -1 6167 5565 4425 166 12 9 chr4 89111513 89112327 -95176335 - L1PA12 LINE L1 -1000 5146 4330 2316 80 0 22 chr4 89112407 89112718 -95175944 + AluY SINE Alu 1 304 -7 25 99 0 0 chr4 89112846 89112927 -95175735 + AT_rich Low_complexity Low_complexity 1 81 0 2012 166 96 28 chr4 89114900 89115328 -95173334 + MSTB2 LTR MaLR 1 457 0 24 32 0 0 chr4 89117337 89117368 -95171294 + AT_rich Low_complexity Low_complexity 1 31 0 284 158 18 0 chr4 89117382 89117439 -95171223 + (TA)n Simple_repeat Simple_repeat 2 59 0 261 0 0 0 chr4 89117439 89117468 -95171194 + (CA)n Simple_repeat Simple_repeat 2 30 0 181 323 92 28 chr4 89117660 89117877 -95170785 + L3 LINE CR1 780 1010 -567 257 254 0 15 chr4 89118862 89118929 -95169733 + L1MA10 LINE L1 6203 6268 -66 46 33 0 0 chr4 89119831 89119891 -95168771 + AT_rich Low_complexity Low_complexity 1 60 0 262 373 0 37 chr4 89120549 89120683 -95167979 - MER5A DNA MER1_type -6 183 55 314 163 198 0 chr4 89121216 89121302 -95167360 - MER58C DNA MER1_type -1 214 112 203 143 0 24 chr4 89121303 89121345 -95167317 + (TATG)n Simple_repeat Simple_repeat 2 42 0 225 267 163 12 chr4 89121348 89121434 -95167228 - MER58C DNA MER1_type -116 99 1 33 43 0 0 chr4 89121489 89121536 -95167126 + AT_rich Low_complexity Low_complexity 1 47 0 304 85 24 37 chr4 89124150 89124232 -95164430 + (TA)n Simple_repeat Simple_repeat 1 81 0 2221 104 0 0 chr4 89124232 89124521 -95164141 - AluSc SINE Alu -20 289 1 27 0 0 0 chr4 89124526 89124553 -95164109 + AT_rich Low_complexity Low_complexity 1 27 0 4829 156 31 4 chr4 89124881 89125722 -95162940 - MER6 DNA MER2_type -1 864 1 896 71 0 9 chr4 89126024 89126137 -95162525 - AluSq/x SINE Alu -183 130 19 1463 145 34 7 chr4 89126344 89126613 -95162049 - L1PB4 LINE L1 -112 6044 5769 911 9 0 0 chr4 89126631 89126736 -95161926 - L1PA2 LINE L1 -2 6153 6049 771 345 70 46 chr4 89126829 89127702 -95160960 - L1PA15-16 LINE L1 -5951 898 5 806 184 70 35 chr4 89127731 89127932 -95160730 - MLT1A2 LTR MaLR -166 208 1 426 257 86 40 chr4 89128624 89128776 -95159886 - MER5B DNA MER1_type 0 178 20 474 18 0 0 chr4 89129647 89129702 -95158960 + (CA)n Simple_repeat Simple_repeat 1 55 0 2280 122 0 0 chr4 89130059 89130371 -95158291 - AluSx SINE Alu 0 312 1 185 253 69 46 chr4 89131343 89131430 -95157232 - MIR SINE MIR -56 206 118 478 261 82 39 chr4 89131576 89131783 -95156879 - L2 LINE L2 0 3313 3098 538 274 21 103 chr4 89131882 89132222 -95156440 - L2 LINE L2 -414 2900 2589 357 247 59 96 chr4 89132431 89132702 -95155960 + L2 LINE L2 3049 3309 -4 955 253 74 68 chr4 89132883 89133389 -95155273 + MLT1E2 LTR MaLR 1 411 -94 4124 211 40 21 chr4 89134330 89134867 -95153795 - L1MB7 LINE L1 -2 6182 5657 222 37 0 0 chr4 89134867 89134894 -95153768 + (TA)n Simple_repeat Simple_repeat 1 27 0 4124 211 40 21 chr4 89134894 89136221 -95152441 - L1MB7 LINE L1 -527 5657 4289 24 32 0 0 chr4 89138294 89138325 -95150337 + AT_rich Low_complexity Low_complexity 1 31 0 195 45 0 68 chr4 89138384 89138428 -95150234 + (TCTCCC)n Simple_repeat Simple_repeat 2 42 0 21 0 0 0 chr4 89138514 89138535 -95150127 + AT_rich Low_complexity Low_complexity 1 21 0 31 58 0 0 chr4 89138656 89138708 -95149954 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr4 89139935 89139956 -95148706 + AT_rich Low_complexity Low_complexity 1 21 0 562 238 69 144 chr4 89140306 89140927 -95147735 - L2 LINE L2 0 3313 2737 1704 242 18 10 chr4 89141739 89142132 -95146530 - MSTD LTR MaLR 0 396 1 2188 154 51 10 chr4 89142138 89142547 -95146115 - MSTB LTR MaLR 0 426 1 254 300 36 43 chr4 89142852 89142992 -95145670 + MER5A DNA MER1_type 9 147 -42 1455 81 5 9 chr4 89143752 89143963 -95144699 + L1PA13 LINE L1 5948 6157 -6 36 0 0 0 chr4 89143963 89143999 -95144663 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr4 89144128 89144151 -95144511 + AT_rich Low_complexity Low_complexity 1 23 0 233 231 19 0 chr4 89144319 89144371 -95144291 + L2 LINE L2 3261 3313 0 369 75 0 0 chr4 89146115 89146168 -95142494 + (TG)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr4 89149009 89149030 -95139632 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 89149814 89149842 -95138820 + AT_rich Low_complexity Low_complexity 1 28 0 2333 73 13 0 chr4 89150316 89150616 -95138046 - AluY SINE Alu -7 304 1 26 0 0 0 chr4 89150626 89150652 -95138010 + AT_rich Low_complexity Low_complexity 1 26 0 260 309 175 36 chr4 89150731 89150925 -95137737 + MIR SINE MIR 21 241 -21 1063 136 35 0 chr4 89151226 89151424 -95137238 - L1MA8 LINE L1 0 6291 6087 1472 294 73 76 chr4 89153242 89154017 -95134645 - L2 LINE L2 0 3313 2553 2098 105 0 7 chr4 89154017 89154302 -95134360 - AluSx SINE Alu -27 285 3 1472 294 73 76 chr4 89154302 89154841 -95133821 - L2 LINE L2 -760 2553 2014 645 267 90 37 chr4 89154842 89155293 -95133369 - MLT2C1 LTR ERVL 0 464 1 245 274 307 28 chr4 89155310 89155418 -95133244 - L2 LINE L2 -1322 1992 1915 1009 238 135 53 chr4 89155418 89155885 -95132777 - MLT1D LTR MaLR 0 505 1 245 274 307 28 chr4 89155885 89155988 -95132674 - L2 LINE L2 -1399 1915 1722 266 226 16 16 chr4 89156659 89156721 -95131941 + L2 LINE L2 3252 3313 0 265 337 134 16 chr4 89156968 89157155 -95131507 + MIR SINE MIR 27 235 -27 261 343 47 76 chr4 89157391 89157666 -95130996 + L2 LINE L2 2210 2467 -847 1566 204 22 30 chr4 89157666 89158034 -95130628 - MLT1A1 LTR MaLR 0 365 1 261 343 47 76 chr4 89158034 89158230 -95130432 + L2 LINE L2 2467 2667 -647 281 284 39 0 chr4 89158341 89158443 -95130219 - MER112 DNA MER1_type -7 253 148 415 318 9 0 chr4 89158476 89158586 -95130076 - LTR16C LTR ERVL -110 381 271 1751 37 0 5 chr4 89158932 89159147 -95129515 + L1PA4 LINE L1 5931 6144 -11 771 221 7 0 chr4 89159356 89159501 -95129161 + MER2 DNA MER2_type 7 152 -193 539 191 36 9 chr4 89159575 89159685 -95128977 - FLAM_A SINE Alu -29 113 1 243 297 16 16 chr4 89159721 89159785 -95128877 + MER2 DNA MER2_type 280 343 -2 1186 185 45 35 chr4 89159789 89160075 -95128587 - Charlie1a DNA MER1_type -1127 328 40 3995 42 17 0 chr4 89160106 89160588 -95128074 - LTR2B LTR ERV1 0 490 1 2241 109 125 13 chr4 89162341 89162726 -95125936 - MSTA LTR MaLR 0 428 1 204 224 0 0 chr4 89163142 89163209 -95125453 + (TCCA)n Simple_repeat Simple_repeat 3 69 0 25 0 0 0 chr4 89163519 89163544 -95125118 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr4 89163702 89163725 -95124937 + (TA)n Simple_repeat Simple_repeat 1 23 0 2334 87 0 19 chr4 89166363 89166674 -95121988 + AluSg SINE Alu 1 305 -5 21 0 0 0 chr4 89166922 89166943 -95121719 + AT_rich Low_complexity Low_complexity 1 21 0 507 267 11 89 chr4 89168418 89168699 -95119963 + L2 LINE L2 3055 3313 0 1795 166 3 13 chr4 89168701 89169030 -95119632 + AluSx SINE Alu 1 312 0 1985 109 3 38 chr4 89169686 89170004 -95118658 + AluSx SINE Alu 1 308 0 469 257 75 27 chr4 89170074 89170261 -95118401 - MER110 LTR ERV1 -7 484 289 235 223 209 65 chr4 89170410 89170549 -95118113 - L2 LINE L2 -981 2333 2175 1027 276 42 32 chr4 89170564 89170966 -95117696 - LTR38 LTR ERV1 -14 542 137 476 324 121 30 chr4 89171012 89171383 -95117279 - L2 LINE L2 -1108 2206 1802 2209 119 3 0 chr4 89173471 89173781 -95114881 + AluSx SINE Alu 1 311 -1 273 342 62 48 chr4 89173796 89174118 -95114544 + L2 LINE L2 2771 3109 -204 1094 188 18 118 chr4 89174125 89174386 -95114276 - L1MA9 LINE L1 -6 6306 6097 1564 189 35 35 chr4 89174386 89174761 -95113901 - THE1C LTR MaLR 0 375 1 1094 188 18 118 chr4 89174761 89174899 -95113763 - L1MA9 LINE L1 -215 6097 5947 637 220 28 110 chr4 89174900 89175155 -95113507 + L2 LINE L2 3080 3313 0 1017 72 17 28 chr4 89175699 89175880 -95112782 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 378 0 0 0 chr4 89177452 89177494 -95111168 + (TA)n Simple_repeat Simple_repeat 2 43 0 306 134 18 0 chr4 89178097 89178161 -95110501 - L1MB8 LINE L1 0 6184 6118 488 297 24 42 chr4 89178388 89178600 -95110062 + MER63A DNA MER1_type 2 209 -1 2031 208 88 47 chr4 89178909 89179514 -95109148 + MLT1E2 LTR MaLR 3 626 0 308 278 52 35 chr4 89179849 89180022 -95108640 + MER5B DNA MER1_type 2 177 -1 386 308 77 0 chr4 89180345 89180475 -95108187 - LTR16A LTR ERVL 0 450 311 259 359 23 16 chr4 89180573 89180701 -95107961 - LTR16A LTR ERVL -300 150 22 264 253 27 13 chr4 89181114 89181189 -95107473 + L2 LINE L2 1972 2047 -1267 230 287 35 11 chr4 89181290 89181377 -95107285 + L2 LINE L2 1972 2060 -1254 33 25 0 0 chr4 89181556 89181596 -95107066 + AT_rich Low_complexity Low_complexity 1 40 0 2374 66 0 0 chr4 89181694 89181997 -95106665 - L1PA5 LINE L1 0 6154 5852 18707 59 5 0 chr4 89181696 89184904 -95103758 - L1PA5 LINE L1 -2 6152 2932 724 276 49 69 chr4 89184936 89185585 -95103077 - L1MEd LINE L1 -4864 1255 620 1245 294 42 73 chr4 89186615 89187175 -95101487 + L2 LINE L2 2023 2564 -750 1985 145 30 16 chr4 89187175 89187540 -95101122 + L1PB4 LINE L1 5781 6150 -6 1245 294 42 73 chr4 89187540 89187598 -95101064 + L2 LINE L2 2564 2622 -692 307 51 0 0 chr4 89187679 89187718 -95100944 + AluSp SINE Alu 1 39 -263 460 92 0 0 chr4 89187718 89187794 -95100868 + Alu SINE Alu 234 309 -1 327 350 90 6 chr4 89187819 89187996 -95100666 + L2 LINE L2 2697 2888 -426 367 346 71 32 chr4 89188022 89188302 -95100360 + L2 LINE L2 2948 3238 -75 531 31 0 0 chr4 89188334 89188399 -95100263 + (TGGA)n Simple_repeat Simple_repeat 4 68 0 231 294 35 35 chr4 89188611 89188696 -95099966 + L2 LINE L2 3229 3313 0 303 335 26 36 chr4 89188716 89188910 -95099752 - L2 LINE L2 -1225 2089 1898 22 0 0 0 chr4 89189652 89189674 -95098988 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr4 89190204 89190247 -95098415 + AT_rich Low_complexity Low_complexity 1 43 0 369 264 11 0 chr4 89190520 89190611 -95098051 - LTR16B LTR ERVL -365 99 8 750 288 43 105 chr4 89190611 89191310 -95097352 + L2 LINE L2 2654 3313 0 191 309 36 0 chr4 89191594 89191649 -95097013 + L2 LINE L2 2739 2795 -519 420 20 0 0 chr4 89191899 89191948 -95096714 + (TG)n Simple_repeat Simple_repeat 1 49 0 234 0 0 0 chr4 89191947 89191973 -95096689 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 235 229 29 29 chr4 89192074 89192144 -95096518 + MLT1K LTR MaLR 507 576 -12 379 315 203 0 chr4 89192851 89192994 -95095668 - MER5A DNA MER1_type -6 183 12 2055 82 0 8 chr4 89194332 89194599 -95094063 + AluSp SINE Alu 39 303 -10 21 71 0 0 chr4 89195248 89195290 -95093372 + AT_rich Low_complexity Low_complexity 1 42 0 1642 155 40 33 chr4 89195327 89195631 -95093031 - AluJb SINE Alu -3 309 4 493 323 37 15 chr4 89196095 89196359 -95092303 - L1MC/D LINE L1 -511 5655 5482 30 77 0 0 chr4 89196511 89196576 -95092086 + AT_rich Low_complexity Low_complexity 1 65 0 1780 236 70 60 chr4 89196883 89197383 -95091279 - LTR40a LTR ERVL -12 507 3 2273 254 56 5 chr4 89197687 89198332 -95090330 + MER63C DNA MER1_type 253 930 0 276 286 61 0 chr4 89198334 89198432 -95090230 - HAL1 LINE L1 -159 2348 2245 1191 220 81 7 chr4 89198455 89198728 -95089934 + MLT1F LTR MaLR 1 293 -249 252 226 68 75 chr4 89198739 89198829 -95089833 - HAL1b LINE L1 -875 473 383 2023 184 32 19 chr4 89198829 89199290 -95089372 + MLT1C LTR MaLR 1 467 0 252 226 68 75 chr4 89199290 89199332 -95089330 - HAL1b LINE L1 -965 383 342 2033 120 29 47 chr4 89199332 89199714 -95088948 - THE1C LTR MaLR 0 375 1 411 294 112 69 chr4 89199715 89200292 -95088370 - HAL1 LINE L1 -1075 1432 811 305 360 59 20 chr4 89200471 89200624 -95088038 - HAL1 LINE L1 -1898 609 451 1894 145 7 3 chr4 89200975 89201271 -95087391 - AluSx SINE Alu -15 297 1 269 320 65 12 chr4 89201361 89201515 -95087147 + MIR3 SINE MIR 38 199 -9 265 373 115 38 chr4 89201694 89202279 -95086383 + L2 LINE L2 2652 3272 0 351 0 0 0 chr4 89202790 89202829 -95085833 + (TG)n Simple_repeat Simple_repeat 2 40 0 28 29 0 0 chr4 89202862 89202897 -95085765 + AT_rich Low_complexity Low_complexity 1 35 0 5134 159 27 40 chr4 89203698 89204254 -95084408 - L1MA9 LINE L1 -6 6306 5744 360 0 0 0 chr4 89204254 89204294 -95084368 + (TG)n Simple_repeat Simple_repeat 2 41 0 5134 159 27 40 chr4 89204294 89205443 -95083219 - L1MA9 LINE L1 -568 5744 4621 680 257 39 23 chr4 89206865 89207122 -95081540 - MIR SINE MIR 0 262 2 180 0 0 0 chr4 89208233 89208253 -95080409 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 236 330 42 17 chr4 89208837 89208955 -95079707 - MIR3 SINE MIR -2 206 86 193 300 217 8 chr4 89209931 89210051 -95078611 - MIR SINE MIR -73 189 45 2375 104 31 6 chr4 89210096 89210451 -95078211 - THE1B LTR MaLR 0 364 1 399 344 97 21 chr4 89210927 89211113 -95077549 - MIR SINE MIR -32 230 31 277 308 103 8 chr4 89211252 89211369 -95077293 - MIR SINE MIR -67 195 68 567 276 35 11 chr4 89211716 89211890 -95076772 - MIR SINE MIR -57 205 28 186 71 0 0 chr4 89212056 89212084 -95076578 + (TTG)n Simple_repeat Simple_repeat 3 30 0 255 103 0 0 chr4 89213277 89213316 -95075346 + (CA)n Simple_repeat Simple_repeat 2 40 0 316 314 39 32 chr4 89213316 89213472 -95075190 - MIR SINE MIR -32 230 74 197 277 96 60 chr4 89213447 89213530 -95075132 - L3 LINE CR1 -1165 412 327 * 21 57 0 0 chr4 89213542 89213577 -95075085 + AT_rich Low_complexity Low_complexity 1 35 0 396 0 0 0 chr4 89213944 89213988 -95074674 + (TG)n Simple_repeat Simple_repeat 2 45 0 221 57 29 0 chr4 89213994 89214029 -95074633 + (TATATG)n Simple_repeat Simple_repeat 5 40 0 240 118 44 0 chr4 89214045 89214113 -95074549 + (TA)n Simple_repeat Simple_repeat 1 71 0 295 319 0 18 chr4 89214319 89214430 -95074232 - MLT1I LTR MaLR -49 360 252 722 328 78 30 chr4 89214430 89214955 -95073707 - MLT1H1 LTR MaLR 0 555 6 385 312 35 45 chr4 89214956 89215155 -95073507 - MLT1I LTR MaLR -154 255 59 216 241 37 0 chr4 89215420 89215474 -95073188 - L2 LINE L2 -1 3271 3216 325 312 64 8 chr4 89216396 89216521 -95072141 - L1MC/D LINE L1 -2233 6370 6239 25 0 0 0 chr4 89216626 89216651 -95072011 + AT_rich Low_complexity Low_complexity 1 25 0 354 284 97 13 chr4 89216665 89216820 -95071842 - L1MC/D LINE L1 -890 6051 5884 474 308 110 29 chr4 89217148 89217421 -95071241 - L1MC/D LINE L1 -1331 5610 5316 445 261 144 69 chr4 89218236 89218527 -95070135 - MLT1H LTR MaLR -42 507 195 2841 84 46 2 chr4 89218563 89218978 -95069684 - L1MA1 LINE L1 -3 6299 5867 807 297 96 60 chr4 89219386 89220328 -95068334 - L1MC/D LINE L1 -2857 4084 3110 748 265 52 44 chr4 89220340 89220589 -95068073 - MIR SINE MIR -1 261 11 1841 256 75 33 chr4 89220662 89220733 -95067929 - L1MCc LINE L1 -4894 1529 1462 297 0 0 0 chr4 89220733 89220766 -95067896 + (TTA)n Simple_repeat Simple_repeat 2 34 0 1841 256 75 33 chr4 89220766 89221090 -95067572 - L1MCc LINE L1 -4961 1462 1153 1243 94 25 25 chr4 89221090 89221291 -95067371 - L1PA10 LINE L1 0 6168 5968 1841 256 75 33 chr4 89221291 89221699 -95066963 - L1MCc LINE L1 -5270 1153 799 576 325 45 49 chr4 89221837 89222083 -95066579 - L1MCc LINE L1 -5842 581 337 559 285 26 42 chr4 89222135 89222203 -95066459 - L1MCc LINE L1 -6090 333 265 1936 159 10 0 chr4 89222203 89222499 -95066163 + AluSx SINE Alu 1 299 -13 559 285 26 42 chr4 89222499 89222739 -95065923 - L1MCc LINE L1 -6158 265 30 383 281 75 100 chr4 89223139 89223631 -95065031 - HAL1b LINE L1 -613 735 256 1421 228 0 35 chr4 89223732 89224044 -95064618 - AluJo SINE Alu -1 301 1 8696 53 2 2 chr4 89225041 89226112 -95062550 + MER11C LTR ERVK 1 1071 0 21 0 0 0 chr4 89226188 89226209 -95062453 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr4 89226450 89226483 -95062179 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr4 89226687 89226716 -95061946 + AT_rich Low_complexity Low_complexity 1 29 0 435 309 51 60 chr4 89226773 89227109 -95061553 + L3 LINE CR1 280 612 -965 1546 64 0 10 chr4 89227672 89227876 -95060786 - L1PA5 LINE L1 -4 6150 5949 181 226 119 83 chr4 89228195 89228279 -95060383 - L2 LINE L2 -2 3311 3225 1140 256 148 26 chr4 89228302 89228727 -95059935 - MLT1D LTR MaLR -28 477 1 1673 190 3 0 chr4 89228759 89229054 -95059608 - AluJo SINE Alu -16 296 1 915 106 0 0 chr4 89229630 89229781 -95058881 + (CA)n Simple_repeat Simple_repeat 2 152 0 227 391 75 69 chr4 89229841 89230176 -95058486 + L2 LINE L2 2932 3268 -4 624 305 54 66 chr4 89230438 89230880 -95057782 - MLT1K LTR MaLR -2 586 150 23 0 0 0 chr4 89230906 89230929 -95057733 + AT_rich Low_complexity Low_complexity 1 23 0 2339 101 0 0 chr4 89231003 89231311 -95057351 - AluSg SINE Alu -2 308 1 914 193 11 0 chr4 89232941 89233117 -95055545 + MER105 DNA DNA 27 204 0 2288 99 3 10 chr4 89234463 89234775 -95053887 - AluSg SINE Alu 0 310 1 1138 242 115 67 chr4 89234985 89235110 -95053552 + L1MC5 LINE L1 7068 7185 -776 1475 206 73 25 chr4 89235110 89235478 -95053184 - MLT1B LTR MaLR 0 390 5 1138 242 115 67 chr4 89235478 89235892 -95052770 + L1MC5 LINE L1 7185 7661 -300 2529 94 3 11 chr4 89235892 89236254 -95052408 + L1PA10 LINE L1 5801 6159 -9 1138 242 115 67 chr4 89236254 89236519 -95052143 + L1MC5 LINE L1 7661 7912 -49 211 278 111 14 chr4 89238926 89238998 -95049664 - L2 LINE L2 -56 3216 3138 936 242 67 45 chr4 89239305 89239729 -95048933 + MLT1C LTR MaLR 24 460 -7 481 288 142 44 chr4 89240023 89240249 -95048413 - MLT1G1 LTR MaLR 0 595 348 1775 175 46 8 chr4 89240321 89240687 -95047975 - L1MB3 LINE L1 -4 6179 5800 8872 187 57 13 chr4 89240687 89242876 -95045786 - L1M4c LINE L1 -4017 2367 15 384 324 62 7 chr4 89243062 89243207 -95045455 - MLT1G1 LTR MaLR -288 261 109 1249 231 81 36 chr4 89243208 89243541 -95045121 - MLT1A1 LTR MaLR 0 365 18 482 286 23 8 chr4 89244749 89244882 -95043780 - L2 LINE L2 0 3313 3179 616 279 26 60 chr4 89245458 89245691 -95042971 + MIR SINE MIR 27 251 -11 2712 211 48 16 chr4 89245715 89246380 -95042282 - MER76 LTR ERV 0 688 3 2267 114 0 0 chr4 89246812 89247119 -95041543 + AluSx SINE Alu 1 307 -5 22 56 0 0 chr4 89247299 89247335 -95041327 + AT_rich Low_complexity Low_complexity 1 36 0 639 251 11 38 chr4 89247554 89247737 -95040925 - MER5B DNA MER1_type 0 178 1 394 348 68 49 chr4 89247749 89248117 -95040545 - L2 LINE L2 -385 2929 2555 23 33 0 0 chr4 89248564 89248594 -95040068 + AT_rich Low_complexity Low_complexity 1 30 0 200 345 11 81 chr4 89248796 89248883 -95039779 - L2 LINE L2 -20 3252 3172 2298 97 13 0 chr4 89249045 89249353 -95039309 - AluSx SINE Alu 0 312 1 768 225 0 78 chr4 89249370 89249561 -95039101 - MER5B DNA MER1_type 0 178 3 687 292 106 0 chr4 89249653 89249889 -95038773 - MIR SINE MIR 0 262 2 420 200 0 0 chr4 89250032 89250137 -95038525 + (TA)n Simple_repeat Simple_repeat 1 105 0 490 158 0 0 chr4 89251871 89251947 -95036715 + AluJ/FLAM SINE Alu 3 78 -234 404 329 171 0 chr4 89252112 89252282 -95036380 + MIR SINE MIR 54 252 -10 224 366 62 27 chr4 89255452 89255564 -95033098 - L2 LINE L2 -9 3304 3189 521 129 0 0 chr4 89255589 89255659 -95033003 - Tigger7 DNA MER2_type 0 2487 2418 1136 213 9 9 chr4 89255691 89255921 -95032741 - Tigger7 DNA MER2_type -475 230 1 1070 193 25 5 chr4 89256931 89257133 -95031529 + MER2 DNA MER2_type 3 208 -137 283 193 11 136 chr4 89257160 89257248 -95031414 + MER2 DNA MER2_type 269 345 0 467 258 78 8 chr4 89257250 89257378 -95031284 - MIR SINE MIR -25 237 101 195 184 0 0 chr4 89257379 89257417 -95031245 + (TA)n Simple_repeat Simple_repeat 2 39 0 324 262 0 0 chr4 89257443 89257504 -95031158 + MIR SINE MIR 32 92 -170 5273 209 6 5 chr4 89257607 89258728 -95029934 + L1 LINE L1 3861 4983 -1163 412 262 37 0 chr4 89258879 89258986 -95029676 - MER81 DNA DNA -3 111 1 682 309 16 0 chr4 89259326 89259572 -95029090 - L1ME3A LINE L1 -272 5898 5649 516 206 0 0 chr4 89259579 89259676 -95028986 + MER5A DNA MER1_type 14 110 -79 1449 88 0 10 chr4 89260190 89260394 -95028268 + L1PA5 LINE L1 5949 6150 -4 180 0 0 0 chr4 89261168 89261188 -95027474 + (A)n Simple_repeat Simple_repeat 1 20 0 434 175 0 0 chr4 89261563 89261643 -95027019 - MADE1 DNA Mariner 0 80 1 300 250 125 22 chr4 89262247 89262383 -95026279 + L1ME LINE L1 5587 5736 -434 5361 98 3 5 chr4 89262483 89263242 -95025420 + MER11C LTR ERVK 315 1071 0 21 0 0 0 chr4 89263318 89263339 -95025323 + AT_rich Low_complexity Low_complexity 1 21 0 911 343 25 23 chr4 89263845 89264516 -95024146 + L1MCa LINE L1 1681 2462 -4145 444 212 10 0 chr4 89264512 89264611 -95024051 + L1MCa LINE L1 2698 2797 -3629 * 1032 177 13 35 chr4 89264773 89265005 -95023657 + AluY SINE Alu 83 309 -2 290 260 10 73 chr4 89265431 89265527 -95023135 - MIR SINE MIR -172 90 1 632 333 87 31 chr4 89266529 89267010 -95021652 - LTR33 LTR ERVL -12 509 2 527 324 67 18 chr4 89267010 89267235 -95021427 - MIR SINE MIR -20 242 7 1790 144 60 0 chr4 89267928 89268212 -95020450 - AluJo SINE Alu -7 305 5 24 67 0 0 chr4 89268332 89268377 -95020285 + AT_rich Low_complexity Low_complexity 1 45 0 454 261 45 23 chr4 89268416 89268592 -95020070 + MER104 DNA MER2_type 1 180 0 22 35 0 0 chr4 89269186 89269215 -95019447 + AT_rich Low_complexity Low_complexity 1 29 0 268 319 20 56 chr4 89269304 89269526 -95019136 + MIR SINE MIR 21 232 -30 397 224 13 0 chr4 89270423 89270499 -95018163 + L1M4b LINE L1 5 81 -6778 3982 175 39 54 chr4 89270549 89271520 -95017142 + L1MB8 LINE L1 5220 6178 0 647 231 60 50 chr4 89271536 89271735 -95016927 + MIR SINE MIR 39 239 -23 203 364 65 19 chr4 89271772 89271926 -95016736 - L2 LINE L2 -179 3093 2933 371 328 73 37 chr4 89273223 89273687 -95014975 + L1M4b LINE L1 782 1262 -5876 1239 74 0 0 chr4 89274799 89274975 -95013687 + (TCC)n Simple_repeat Simple_repeat 3 178 0 372 181 23 44 chr4 89276206 89276323 -95012339 - MER34 LTR ERV1 -5 775 449 290 307 45 23 chr4 89276824 89276912 -95011750 + MIR SINE MIR 2 91 -171 225 336 139 0 chr4 89277181 89277303 -95011359 + MIR SINE MIR 100 238 -24 2078 110 4 0 chr4 89277674 89277979 -95010683 - AluSp SINE Alu 0 306 1 255 318 111 8 chr4 89278292 89278418 -95010244 + MIR SINE MIR 124 262 0 2095 103 3 27 chr4 89278528 89278828 -95009834 - AluSg SINE Alu -17 293 1 213 94 0 0 chr4 89279038 89279070 -95009592 + (A)n Simple_repeat Simple_repeat 1 32 0 1135 217 94 22 chr4 89279230 89279506 -95009156 + AluJb SINE Alu 1 296 -6 236 319 88 0 chr4 89279506 89279666 -95008996 - L1ME LINE L1 -355 5766 5593 6504 85 3 8 chr4 89279677 89280573 -95008089 - L1PA8 LINE L1 0 6172 5281 370 351 23 12 chr4 89280557 89280728 -95007934 - L1ME LINE L1 -536 5585 5413 * 1268 270 99 48 chr4 89281183 89281782 -95006880 + L2 LINE L2 2467 3167 -146 189 0 0 0 chr4 89281782 89281803 -95006859 + (TA)n Simple_repeat Simple_repeat 1 21 0 1268 270 99 48 chr4 89281803 89281916 -95006746 + L2 LINE L2 3167 3273 -40 27 0 0 0 chr4 89282833 89282860 -95005802 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr4 89282898 89282926 -95005736 + AT_rich Low_complexity Low_complexity 1 28 0 232 319 108 13 chr4 89284514 89284671 -95003991 - L1ME3A LINE L1 -12 6158 5987 923 233 69 35 chr4 89284765 89285113 -95003549 - L1ME3A LINE L1 -224 5946 5587 666 299 74 75 chr4 89285332 89285717 -95002945 - L1MEd LINE L1 -5010 1109 724 497 138 0 0 chr4 89285717 89285797 -95002865 + MADE1 DNA Mariner 1 80 0 666 299 74 75 chr4 89285797 89285967 -95002695 - L1MEd LINE L1 -5395 724 555 210 71 0 0 chr4 89286165 89286193 -95002469 + (T)n Simple_repeat Simple_repeat 1 28 0 2031 82 8 0 chr4 89287801 89288122 -95000540 - AluY SINE Alu 0 350 28 359 221 122 64 chr4 89288306 89288478 -95000184 - MLT1J LTR MaLR -319 192 11 1804 53 4 4 chr4 89290433 89290661 -94998001 - AluY SINE Alu -1 310 83 543 168 10 0 chr4 89290821 89290922 -94997740 - L1ME LINE L1 -3627 2453 2352 * 1682 294 71 32 chr4 89290918 89292399 -94996263 - L1ME LINE L1 -4145 2116 529 834 306 68 36 chr4 89292671 89293112 -94995550 - L1ME LINE L1 -5610 460 6 363 359 13 0 chr4 89294027 89294183 -94994479 - L2 LINE L2 -1207 2107 1950 1129 253 157 25 chr4 89295286 89295899 -94992763 + Charlie2 DNA MER1_type 2029 2722 -140 260 319 0 35 chr4 89295908 89296024 -94992638 - LTR33A LTR ERVL 0 523 412 356 246 34 134 chr4 89296241 89296420 -94992242 - LTR33A LTR ERVL -362 161 1 253 276 78 0 chr4 89296438 89296554 -94992108 + Charlie2 DNA MER1_type 2729 2853 -9 2090 135 0 0 chr4 89297265 89297577 -94991085 - AluSx SINE Alu 0 312 1 539 365 116 39 chr4 89297684 89299463 -94989199 - L2 LINE L2 -15 3257 1064 1441 117 142 86 chr4 89299689 89299876 -94988786 + L1MC2 LINE L1 5989 6203 -141 1558 170 7 31 chr4 89299876 89300165 -94988497 + AluJo SINE Alu 1 282 -30 1441 117 142 86 chr4 89300165 89300301 -94988361 + L1MC2 LINE L1 6203 6330 -14 215 342 27 9 chr4 89300323 89300434 -94988228 - L2 LINE L2 -2597 717 605 195 333 13 13 chr4 89301117 89301195 -94987467 + MIR SINE MIR 71 148 -114 186 206 191 0 chr4 89301321 89301384 -94987278 - L2 LINE L2 -766 2548 2474 319 67 67 0 chr4 89301389 89301434 -94987228 - L1PA6 LINE L1 -277 5877 5830 1028 29 0 36 chr4 89301434 89301564 -94987098 + L1PA5 LINE L1 6023 6154 0 201 39 0 0 chr4 89301640 89301666 -94986996 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 741 295 159 22 chr4 89301678 89302321 -94986341 + L2 LINE L2 2550 3281 -32 706 298 47 9 chr4 89302683 89302898 -94985764 - MIR SINE MIR -36 226 4 418 261 23 31 chr4 89302898 89303021 -94985641 - L2 LINE L2 -988 2326 2205 964 309 78 37 chr4 89303221 89303681 -94984981 - MLT1K LTR MaLR -106 482 4 667 291 96 13 chr4 89304242 89304472 -94984190 - MIR SINE MIR -7 255 7 207 189 0 0 chr4 89305058 89305095 -94983567 + GA-rich Low_complexity Low_complexity 2 38 0 496 286 47 104 chr4 89305183 89305480 -94983182 - L2 LINE L2 0 3272 2993 4846 41 0 0 chr4 89305781 89306367 -94982295 - L1PA4 LINE L1 -3 6152 5567 187 358 119 9 chr4 89309583 89309692 -94978970 - L2 LINE L2 -7 3265 3145 233 67 0 44 chr4 89309693 89309738 -94978924 + (CAGAGA)n Simple_repeat Simple_repeat 4 46 0 1568 270 80 44 chr4 89309756 89310442 -94978220 + L2 LINE L2 2147 2857 -457 195 312 11 65 chr4 89310631 89310724 -94977938 + MIR SINE MIR 61 148 -114 214 216 122 40 chr4 89311741 89311815 -94976847 - L2 LINE L2 -5 3308 3229 1185 288 82 36 chr4 89312004 89312470 -94976192 + MLT1J LTR MaLR 1 487 -24 588 294 65 52 chr4 89313236 89313545 -94975117 - MLT1H LTR MaLR -225 324 12 36 40 0 0 chr4 89313953 89314003 -94974659 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr4 89315362 89315383 -94973279 + AT_rich Low_complexity Low_complexity 1 21 0 355 275 91 48 chr4 89315563 89315872 -94972790 + L1M4 LINE L1 2675 2996 -3150 195 42 0 0 chr4 89315881 89315905 -94972757 + (TTCCC)n Simple_repeat Simple_repeat 5 28 0 284 276 20 31 chr4 89316005 89316103 -94972559 + CT-rich Low_complexity Low_complexity 1 97 0 593 356 106 23 chr4 89316562 89317166 -94971496 + L3 LINE CR1 376 1029 -548 240 316 41 66 chr4 89317190 89317386 -94971276 + L3 LINE CR1 1214 1404 -173 225 250 96 0 chr4 89317437 89317489 -94971173 + MIR SINE MIR 194 250 -12 30 27 0 0 chr4 89317739 89317776 -94970886 + AT_rich Low_complexity Low_complexity 1 37 0 23 86 0 0 chr4 89317800 89317858 -94970804 + AT_rich Low_complexity Low_complexity 1 58 0 460 354 150 33 chr4 89318128 89319334 -94969328 - L2 LINE L2 0 3313 1910 2187 30 4 0 chr4 89319927 89320194 -94968468 - L1PA4 LINE L1 -2 6153 5886 404 36 0 18 chr4 89320342 89320397 -94968265 + (GA)n Simple_repeat Simple_repeat 2 55 0 26 93 0 0 chr4 89320687 89320762 -94967900 + AT_rich Low_complexity Low_complexity 1 75 0 503 333 46 9 chr4 89321354 89321573 -94967089 + MIR SINE MIR 2 228 -34 250 300 64 124 chr4 89324045 89324295 -94964367 - L2 LINE L2 -4 3268 3034 752 330 69 56 chr4 89324468 89325217 -94963445 - L2 LINE L2 -520 2794 2036 567 215 193 47 chr4 89325332 89325565 -94963097 - MLT1G3 LTR MaLR -106 424 158 208 179 105 74 chr4 89325645 89325740 -94962922 + MIR SINE MIR 155 252 -10 2119 103 30 0 chr4 89325943 89326244 -94962418 + AluSq SINE Alu 1 310 -3 984 339 68 64 chr4 89326633 89327747 -94960915 + L2 LINE L2 2159 3268 -4 213 229 21 0 chr4 89329121 89329169 -94959493 - L2 LINE L2 -1 3312 3264 258 322 58 0 chr4 89329211 89329298 -94959364 - L2 LINE L2 -9 3263 3172 2459 64 0 0 chr4 89330744 89331042 -94957620 + AluY SINE Alu 1 298 -13 198 333 30 0 chr4 89332066 89332132 -94956530 - L2 LINE L2 -69 3203 3136 563 273 86 16 chr4 89332469 89332656 -94956006 + MIR SINE MIR 41 240 -22 2419 166 40 17 chr4 89333325 89333800 -94954862 - MER66B LTR ERV1 0 486 1 21 82 0 0 chr4 89334266 89334315 -94954347 + AT_rich Low_complexity Low_complexity 1 49 0 688 308 83 22 chr4 89335264 89335405 -94953257 - L2 LINE L2 -6 3307 3176 198 0 0 0 chr4 89335405 89335427 -94953235 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 688 308 83 22 chr4 89335427 89335793 -94952869 - L2 LINE L2 -137 3176 2717 37 39 0 0 chr4 89336463 89336514 -94952148 + AT_rich Low_complexity Low_complexity 1 51 0 29 47 0 0 chr4 89338125 89338168 -94950494 + AT_rich Low_complexity Low_complexity 1 43 0 2281 86 3 3 chr4 89338735 89339036 -94949626 - AluSp SINE Alu -12 301 1 2212 93 7 0 chr4 89339079 89339369 -94949293 + AluSp SINE Alu 1 292 -21 231 292 148 42 chr4 89340148 89340364 -94948298 - L1ME LINE L1 -295 5826 5588 22 56 0 0 chr4 89341115 89341151 -94947511 + AT_rich Low_complexity Low_complexity 1 36 0 309 244 23 35 chr4 89341866 89341952 -94946710 + MIR SINE MIR 165 249 -13 1289 248 29 66 chr4 89344001 89344412 -94944250 - MSTD LTR MaLR 0 396 1 42 104 0 0 chr4 89345580 89345734 -94942928 + AT_rich Low_complexity Low_complexity 1 154 0 292 191 29 0 chr4 89346005 89346052 -94942610 - MLT2B3 LTR ERVL 0 554 506 1261 156 5 9 chr4 89346052 89346270 -94942392 - Tigger1 DNA MER2_type -1 2417 2201 632 179 58 58 chr4 89346258 89346414 -94942248 - Tigger1 DNA MER2_type -2261 157 2 * 2236 188 76 42 chr4 89346435 89346937 -94941725 - MLT2B3 LTR ERVL -41 508 5 245 303 62 17 chr4 89347064 89347242 -94941420 + L1ME LINE L1 5635 5820 -301 347 264 130 67 chr4 89347782 89348081 -94940581 - ERVL LTR ERVL -4323 1441 1124 413 308 88 0 chr4 89348830 89349012 -94939650 - L2 LINE L2 -2303 1011 814 3935 68 8 0 chr4 89349216 89349758 -94938904 + L1PA8 LINE L1 5634 6179 0 24 32 0 0 chr4 89350417 89350448 -94938214 + AT_rich Low_complexity Low_complexity 1 31 0 477 265 105 35 chr4 89351276 89351533 -94937129 - L1ME3A LINE L1 -2 6102 5828 2371 159 3 0 chr4 89351623 89352000 -94936662 - MER57A LTR ERV1 0 403 26 3611 269 102 35 chr4 89352000 89354716 -94933946 - L1ME3A LINE L1 -403 5701 2813 239 198 22 154 chr4 89354980 89355071 -94933591 - L1ME3A LINE L1 -5989 81 3 21 0 0 0 chr4 89355404 89355425 -94933237 + AT_rich Low_complexity Low_complexity 1 21 0 1750 196 42 24 chr4 89355799 89356182 -94932480 - MLT1B LTR MaLR 0 390 1 1510 311 110 35 chr4 89356313 89357338 -94931324 - L2 LINE L2 -211 3102 2014 613 304 89 8 chr4 89359374 89359611 -94929051 - MIR SINE MIR 0 262 7 516 135 0 0 chr4 89359901 89359990 -94928672 - L1MA9 LINE L1 -22 6290 6202 1556 135 29 0 chr4 89359999 89360243 -94928419 - L1MA9 LINE L1 -231 6081 5831 632 304 70 9 chr4 89360467 89360697 -94927965 - MIR SINE MIR 0 262 19 4056 214 53 70 chr4 89363422 89365263 -94923399 - L1MD2 LINE L1 -11 6231 4459 1326 207 16 70 chr4 89365263 89365649 -94923013 - MLT1A1 LTR MaLR 0 365 1 4056 214 53 70 chr4 89365649 89366248 -94922414 - L1MD2 LINE L1 -1783 4459 3851 205 341 36 72 chr4 89366803 89366941 -94921721 + L2 LINE L2 3133 3265 -7 * 630 271 0 0 chr4 89366922 89367062 -94921600 - MIR SINE MIR -6 256 117 271 305 85 14 chr4 89367309 89367450 -94921212 + MIR SINE MIR 28 178 -84 194 285 102 51 chr4 89369314 89369451 -94919211 + MIR3 SINE MIR 2 145 -63 299 25 25 0 chr4 89369887 89369927 -94918735 + (CA)n Simple_repeat Simple_repeat 1 41 0 223 308 131 31 chr4 89370404 89370495 -94918167 + MIR3 SINE MIR 3 112 -96 2772 36 0 0 chr4 89370495 89370828 -94917834 - L1PA4 LINE L1 0 6155 5823 223 308 131 31 chr4 89370828 89370866 -94917796 + MIR3 SINE MIR 112 145 -63 26 0 0 0 chr4 89370996 89371022 -94917640 + AT_rich Low_complexity Low_complexity 1 26 0 330 376 26 29 chr4 89371444 89371784 -94916878 + L3 LINE CR1 526 864 -713 278 348 18 37 chr4 89372005 89372169 -94916493 + L3b LINE CR1 1162 1322 -261 40 79 0 29 chr4 89372750 89372890 -94915772 + AT_rich Low_complexity Low_complexity 1 136 0 1702 45 5 9 chr4 89375121 89375343 -94913319 + L1PA4 LINE L1 5935 6155 0 2021 108 13 7 chr4 89375359 89375665 -94912997 - AluSc SINE Alu -1 308 1 22 70 0 0 chr4 89377678 89377721 -94910941 + AT_rich Low_complexity Low_complexity 1 43 0 275 296 83 0 chr4 89377766 89377874 -94910788 - L3 LINE CR1 -1 1576 1460 21 0 0 0 chr4 89378076 89378097 -94910565 + AT_rich Low_complexity Low_complexity 1 21 0 2139 132 0 0 chr4 89378103 89378407 -94910255 - AluSx SINE Alu -8 304 1 2130 125 10 16 chr4 89378944 89379257 -94909405 - AluSq SINE Alu -2 311 1 226 256 244 0 chr4 89381225 89381303 -94907359 - MER5A DNA MER1_type -83 106 10 29 28 0 0 chr4 89381465 89381501 -94907161 + AT_rich Low_complexity Low_complexity 1 36 0 959 98 148 44 chr4 89381566 89381671 -94906991 + MER30 DNA MER1_type 1 94 -136 324 0 0 0 chr4 89381671 89381707 -94906955 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 959 98 148 44 chr4 89381707 89381784 -94906878 + MER30 DNA MER1_type 94 202 -28 575 115 83 19 chr4 89381867 89382023 -94906639 - L1MA5 LINE L1 -2 6298 6133 765 238 72 0 chr4 89382563 89382744 -94905918 + MER20 DNA MER1_type 7 200 -19 592 255 46 7 chr4 89382754 89382907 -94905755 + MER5A DNA MER1_type 1 159 -30 611 163 0 27 chr4 89383210 89383357 -94905305 + (TA)n Simple_repeat Simple_repeat 2 144 0 1344 251 62 59 chr4 89383707 89384222 -94904440 - L2 LINE L2 0 3313 2800 479 255 161 13 chr4 89384229 89384378 -94904284 + MER5A DNA MER1_type 11 181 -8 527 279 82 0 chr4 89384391 89384574 -94904088 - L2 LINE L2 -510 2804 2607 1105 274 97 47 chr4 89385408 89385922 -94902740 - L2 LINE L2 -4 3309 2780 322 326 74 30 chr4 89385902 89386037 -94902625 - MER5B DNA MER1_type -37 141 1 * 4467 282 102 89 chr4 89386037 89388537 -94900125 - L2 LINE L2 -504 2810 269 416 292 31 0 chr4 89388537 89388667 -94899995 - MER94 DNA DNA 0 134 1 4467 282 102 89 chr4 89388667 89388908 -94899754 - L2 LINE L2 -3045 269 33 21 0 0 0 chr4 89389751 89389772 -94898890 + AT_rich Low_complexity Low_complexity 1 21 0 615 92 0 0 chr4 89390015 89390102 -94898560 + (TA)n Simple_repeat Simple_repeat 2 88 0 206 195 0 0 chr4 89390312 89390353 -94898309 - L2 LINE L2 0 3272 3232 180 359 65 69 chr4 89390396 89390658 -94898004 - L2 LINE L2 -176 3096 2836 22 0 0 0 chr4 89391241 89391263 -94897399 + AT_rich Low_complexity Low_complexity 1 22 0 1704 175 52 27 chr4 89391303 89391669 -94896993 + THE1C LTR MaLR 1 375 0 2454 87 3 0 chr4 89391774 89392085 -94896577 + AluSp SINE Alu 1 312 -1 21 0 0 0 chr4 89392613 89392634 -94896028 + AT_rich Low_complexity Low_complexity 1 21 0 37 23 0 0 chr4 89392907 89392951 -94895711 + AT_rich Low_complexity Low_complexity 1 44 0 2019 157 29 8 chr4 89392951 89393327 -94895335 - L1MB3 LINE L1 -15 6168 5785 237 211 0 0 chr4 89393327 89393379 -94895283 + (TATATG)n Simple_repeat Simple_repeat 4 55 0 239 152 106 15 chr4 89393400 89393466 -94895196 - L1MC4 LINE L1 -1339 6703 6632 * 1401 190 145 31 chr4 89393434 89393779 -94894883 - L1MB3 LINE L1 -393 5790 5412 584 319 11 21 chr4 89394112 89394303 -94894359 - MIR3 SINE MIR 0 208 20 432 321 27 27 chr4 89394371 89394558 -94894104 - MER5A DNA MER1_type -1 188 2 647 289 11 0 chr4 89394593 89394780 -94893882 + MER5A DNA MER1_type 1 189 0 332 399 63 23 chr4 89395086 89395485 -94893177 + L2 LINE L2 2283 2697 -617 977 202 38 32 chr4 89396435 89396739 -94891923 + MER96B DNA MER1_type? 10 406 -11 182 61 0 30 chr4 89397084 89397117 -94891545 + (TTTTTA)n Simple_repeat Simple_repeat 2 33 0 1147 288 178 22 chr4 89398298 89398479 -94890183 + L2 LINE L2 2292 2443 -870 947 133 0 12 chr4 89398479 89398645 -94890017 + (TTCC)n Simple_repeat Simple_repeat 3 166 0 1660 142 28 56 chr4 89398648 89398936 -94889726 - AluSx SINE Alu -32 280 1 1147 288 178 22 chr4 89398936 89399513 -94889149 + L2 LINE L2 2444 3166 -147 810 194 36 9 chr4 89399516 89399722 -94888940 - L1MA9 LINE L1 0 6291 6088 522 262 14 14 chr4 89399724 89399865 -94888797 + L2 LINE L2 3173 3313 0 5297 154 24 10 chr4 89399984 89400463 -94888199 - L1ME1 LINE L1 -33 6263 5792 462 36 0 0 chr4 89400463 89400519 -94888143 + (CA)n Simple_repeat Simple_repeat 2 57 0 5297 154 24 10 chr4 89400519 89401215 -94887447 - L1ME1 LINE L1 -504 5792 5084 2932 206 40 1 chr4 89401234 89401880 -94886782 + L1ME1 LINE L1 4420 5090 -1056 453 275 60 0 chr4 89401908 89402108 -94886554 - Charlie7 DNA MER1_type -316 2296 2085 22 35 0 0 chr4 89403036 89403065 -94885597 + AT_rich Low_complexity Low_complexity 1 29 0 2231 187 126 62 chr4 89403341 89403710 -94884952 + L1MD3 LINE L1 6715 7059 -936 291 185 65 76 chr4 89403710 89403802 -94884860 + MLT1F1 LTR MaLR 35 125 -442 2231 187 126 62 chr4 89403802 89404345 -94884317 + L1MD3 LINE L1 7059 7994 -1 711 243 120 28 chr4 89404359 89404717 -94883945 - HAL1 LINE L1 -198 2309 1919 1440 262 112 43 chr4 89404750 89405715 -94882947 - HAL1 LINE L1 -687 1820 790 211 354 7 56 chr4 89405738 89405882 -94882780 - L2 LINE L2 -337 2977 2841 240 208 0 21 chr4 89406125 89406173 -94882489 - MIR3 SINE MIR -46 162 116 284 235 63 140 chr4 89407304 89407525 -94881137 + L2 LINE L2 3105 3308 -5 21 0 0 0 chr4 89408590 89408611 -94880051 + AT_rich Low_complexity Low_complexity 1 21 0 399 68 0 0 chr4 89408937 89408996 -94879666 + (GA)n Simple_repeat Simple_repeat 2 60 0 243 341 98 0 chr4 89409332 89409455 -94879207 + MIR SINE MIR 20 154 -108 276 326 15 44 chr4 89409714 89409746 -94878916 - MIR SINE MIR -111 151 120 2341 113 0 0 chr4 89409746 89410057 -94878605 + AluSp SINE Alu 3 313 0 276 326 15 44 chr4 89410057 89410159 -94878503 - MIR SINE MIR -142 120 21 887 298 94 31 chr4 89410306 89410783 -94877879 - L2 LINE L2 0 3313 2807 598 250 0 0 chr4 89410828 89410940 -94877722 - MER63A DNA MER1_type -1 209 98 388 243 28 0 chr4 89410940 89411047 -94877615 + L1ME3 LINE L1 6052 6161 -1 238 261 101 14 chr4 89411070 89411208 -94877454 + L1MEd LINE L1 687 836 -5283 849 314 141 2 chr4 89411314 89411734 -94876928 - L2 LINE L2 -769 2545 2068 283 298 136 37 chr4 89412822 89413013 -94875649 - MIR SINE MIR -29 233 24 2175 116 0 7 chr4 89413144 89413454 -94875208 + AluSx SINE Alu 1 308 -4 234 316 53 60 chr4 89413602 89413735 -94874927 + MIR3 SINE MIR 14 145 -63 249 365 107 28 chr4 89415098 89415276 -94873386 + MIR SINE MIR 1 192 -70 631 162 22 66 chr4 89415356 89415492 -94873170 - FLAM_A SINE Alu -3 130 1 495 332 169 14 chr4 89415680 89416029 -94872633 - L3 LINE CR1 -134 1443 1041 565 299 126 4 chr4 89416174 89416405 -94872257 + MIR SINE MIR 2 260 -2 605 290 71 52 chr4 89416438 89416841 -94871821 - L2 LINE L2 -122 3191 2782 321 300 50 17 chr4 89416925 89416952 -94871710 - L3 LINE CR1 -547 1030 1005 574 100 0 0 chr4 89416952 89417032 -94871630 - MADE1 DNA Mariner 0 80 1 321 300 50 17 chr4 89417032 89417124 -94871538 - L3 LINE CR1 -572 1005 907 6414 30 1 3 chr4 89417127 89417892 -94870770 - L1PA4 LINE L1 0 6155 5392 5507 73 6 0 chr4 89417892 89418616 -94870046 - L1PA6 LINE L1 -9 6145 5418 453 312 197 27 chr4 89418720 89419162 -94869500 - L3 LINE CR1 -850 727 211 673 167 20 27 chr4 89419692 89419842 -94868820 - L1MA3 LINE L1 0 6305 6157 670 221 43 7 chr4 89419868 89420008 -94868654 - FRAM SINE Alu -30 146 2 248 186 0 0 chr4 89420012 89420055 -94868607 - MSTB LTR MaLR -4 424 382 21014 115 10 25 chr4 89420056 89424367 -94864295 + L1PA7 LINE L1 1 4336 -2125 6813 68 10 0 chr4 89424367 89425490 -94863172 + L1PA7 LINE L1 5337 6469 0 1931 157 74 11 chr4 89425506 89425857 -94862805 - MSTB LTR MaLR -27 399 27 775 206 6 31 chr4 89425857 89426017 -94862645 - AluJo SINE Alu -144 168 13 57 28 0 0 chr4 89426150 89426221 -94862441 + AT_rich Low_complexity Low_complexity 1 71 0 508 235 10 98 chr4 89426317 89426521 -94862141 + L1MC5 LINE L1 7744 7929 -32 6101 175 20 14 chr4 89426614 89428208 -94860454 - L1MC1 LINE L1 -1 6332 4728 334 169 0 0 chr4 89428222 89428281 -94860381 - L1MC1 LINE L1 -1392 4754 4696 207 0 0 0 chr4 89429547 89429570 -94859092 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 242 204 38 76 chr4 89430329 89430461 -94858201 - HAL1b LINE L1 -305 1043 917 * 972 182 87 16 chr4 89430454 89430696 -94857966 + L1MD2 LINE L1 6101 6359 0 397 347 80 0 chr4 89431187 89431363 -94857299 - MLT1J2 LTR MaLR -44 406 217 1179 246 74 32 chr4 89431369 89431733 -94856929 + L1ME1 LINE L1 5732 6111 -73 1836 152 6 25 chr4 89431733 89432048 -94856614 + AluSx SINE Alu 1 309 -3 1179 246 74 32 chr4 89432048 89432125 -94856537 + L1ME1 LINE L1 6111 6183 -1 442 242 84 84 chr4 89432230 89432408 -94856254 + MER5A DNA MER1_type 12 189 0 23 54 0 0 chr4 89432702 89432739 -94855923 + AT_rich Low_complexity Low_complexity 1 37 0 411 299 51 62 chr4 89433253 89433448 -94855214 + MIR SINE MIR 8 198 -50 453 289 88 29 chr4 89433578 89433782 -94854880 + MER20 DNA MER1_type 4 219 0 598 291 69 79 chr4 89434108 89434603 -94854059 + LTR16A1 LTR ERVL 2 457 0 595 284 147 54 chr4 89434603 89435369 -94853293 + L2 LINE L2 2461 3312 -1 237 270 104 52 chr4 89435381 89435496 -94853166 - MIR SINE MIR -63 145 25 452 123 9 104 chr4 89435842 89435948 -94852714 + L1MA5A LINE L1 6197 6292 -5 214 143 0 48 chr4 89436210 89436252 -94852410 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 248 330 93 0 chr4 89436278 89436375 -94852287 - L2 LINE L2 -175 3097 2992 23 0 0 0 chr4 89437693 89437716 -94850946 + AT_rich Low_complexity Low_complexity 1 23 0 374 262 19 10 chr4 89438218 89438321 -94850341 + L2 LINE L2 3178 3281 -32 260 284 28 49 chr4 89439515 89439639 -94849023 + MIR3 SINE MIR 38 160 -48 2184 116 53 28 chr4 89439641 89439996 -94848666 - THE1B LTR MaLR 0 364 1 354 273 127 30 chr4 89440054 89440340 -94848322 - MLT1H1 LTR MaLR 0 595 185 273 264 9 38 chr4 89440372 89440478 -94848184 - MLT1H1 LTR MaLR -471 122 20 719 243 58 16 chr4 89440747 89440936 -94847726 + MIR SINE MIR 59 255 -7 24 32 0 0 chr4 89441085 89441116 -94847546 + AT_rich Low_complexity Low_complexity 1 31 0 267 316 74 21 chr4 89442845 89442940 -94845722 - L2 LINE L2 -19 3253 3154 554 146 6 128 chr4 89443609 89443773 -94844889 - MER69 DNA AcHobo -6 2520 2377 3807 125 7 27 chr4 89443915 89444393 -94844269 + THE1-int LTR MaLR 775 1240 -340 1919 168 3 0 chr4 89444393 89444690 -94843972 - AluSx SINE Alu -12 300 3 3807 125 7 27 chr4 89444690 89444809 -94843853 + THE1-int LTR MaLR 1240 1360 -220 411 54 0 18 chr4 89445357 89445413 -94843249 + HERVH48 LTR ERV1 6600 6654 0 2402 126 31 10 chr4 89445413 89445803 -94842859 + MER48 LTR ERV1 1 398 0 1664 164 4 0 chr4 89445803 89446066 -94842596 + HERVH48 LTR ERV1 1 264 -6390 * 3537 125 63 11 chr4 89446049 89446663 -94841999 + HERVH48 LTR ERV1 445 1090 -5564 2234 57 0 0 chr4 89446763 89447028 -94841634 - AluY SINE Alu -46 265 1 1132 191 45 23 chr4 89447036 89447345 -94841317 - MER69 DNA AcHobo -213 2313 1998 * 1394 251 15 56 chr4 89447322 89447789 -94840873 - MER69 DNA AcHobo -1949 577 130 1968 74 4 15 chr4 89449087 89449358 -94839304 - L1PA7 LINE L1 -9 6145 5878 21 0 0 0 chr4 89449597 89449618 -94839044 + AT_rich Low_complexity Low_complexity 1 21 0 367 356 96 0 chr4 89449691 89449868 -94838794 - MIR3 SINE MIR -11 197 4 2166 213 51 16 chr4 89450140 89450628 -94838034 - MLT1D LTR MaLR 0 505 1 21 0 0 0 chr4 89450844 89450865 -94837797 + AT_rich Low_complexity Low_complexity 1 21 0 1265 226 113 28 chr4 89450984 89451409 -94837253 - MLT1C LTR MaLR 0 467 7 479 297 71 39 chr4 89451630 89451873 -94836789 - MIR SINE MIR -15 247 3 8047 124 38 3 chr4 89452738 89453990 -94834672 - HSMAR2 DNA Mariner -3 1299 5 372 355 33 51 chr4 89454062 89454338 -94834324 + L2 LINE L2 2124 2394 -920 527 333 32 51 chr4 89454646 89454862 -94833800 - MIR SINE MIR -22 240 29 1435 210 75 10 chr4 89455342 89455727 -94832935 - Charlie4a DNA MER1_type -81 427 18 267 264 8 70 chr4 89456950 89457079 -94831583 + Charlie8 DNA MER1_type 138 258 -2159 22 0 0 0 chr4 89457167 89457189 -94831473 + AT_rich Low_complexity Low_complexity 1 22 0 42439 38 22 1 chr4 89457189 89463216 -94825446 - L1PA3 LINE L1 -3 6152 1 617 249 44 39 chr4 89463532 89463737 -94824925 + MIR SINE MIR 57 262 0 442 313 75 26 chr4 89464002 89464229 -94824433 - MIR SINE MIR -5 257 20 2370 84 3 0 chr4 89464433 89464742 -94823920 + AluY SINE Alu 1 310 -1 263 247 32 75 chr4 89466261 89466354 -94822308 - MIR SINE MIR -155 107 19 246 301 12 0 chr4 89466464 89466547 -94822115 + CT-rich Low_complexity Low_complexity 2 85 0 23 0 0 0 chr4 89467031 89467054 -94821608 + AT_rich Low_complexity Low_complexity 1 23 0 556 303 35 64 chr4 89467814 89468237 -94820425 + L1ME LINE L1 122 532 -5538 1464 234 67 20 chr4 89468330 89469291 -94819371 + L1MB5 LINE L1 5118 6145 -19 14088 138 40 17 chr4 89470490 89471068 -94817594 + Tigger1 DNA MER2_type 7 570 -1848 2212 100 0 0 chr4 89471068 89471379 -94817283 + AluSq SINE Alu 5 315 0 14088 138 40 17 chr4 89471379 89473156 -94815506 + Tigger1 DNA MER2_type 570 2417 -1 1042 186 5 14 chr4 89473300 89473510 -94815152 - MER3 DNA MER1_type -1 208 1 325 318 12 122 chr4 89473780 89474117 -94814545 - L2 LINE L2 -4 3268 2969 1996 154 0 0 chr4 89474121 89474426 -94814236 + AluSx SINE Alu 1 305 -7 668 299 116 39 chr4 89475427 89475972 -94812690 - L1ME3A LINE L1 -248 5922 5336 283 270 0 0 chr4 89476206 89476295 -94812367 + L1MC4 LINE L1 6614 6702 -1340 262 281 22 0 chr4 89476216 89476305 -94812357 - L1MC4 LINE L1 -1339 6703 6613 * 21 0 0 0 chr4 89476379 89476400 -94812262 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr4 89476423 89476446 -94812216 + (T)n Simple_repeat Simple_repeat 1 23 0 42952 35 22 1 chr4 89476448 89482475 -94806187 - L1HS LINE L1 -1 6154 1 34 93 0 0 chr4 89482625 89482722 -94805940 + AT_rich Low_complexity Low_complexity 1 97 0 1092 104 7 0 chr4 89483588 89483742 -94804920 - L1P2 LINE L1 -472 5682 5528 1601 185 4 11 chr4 89484398 89484679 -94803983 + AluSx SINE Alu 1 279 -33 80 0 0 0 chr4 89484690 89484770 -94803892 + AT_rich Low_complexity Low_complexity 1 80 0 1748 75 13 13 chr4 89484914 89485142 -94803520 + AluY SINE Alu 68 295 -16 226 273 65 0 chr4 89486167 89486244 -94802418 + MER81 DNA DNA 33 114 0 292 325 191 16 chr4 89488135 89488323 -94800339 + MIR SINE MIR 41 261 -1 446 316 42 30 chr4 89490533 89490701 -94797961 - MER5A DNA MER1_type -19 170 1 25 0 0 0 chr4 89491084 89491109 -94797553 + AT_rich Low_complexity Low_complexity 1 25 0 2213 55 74 16 chr4 89491291 89491603 -94797059 - L1PA7 LINE L1 0 6154 5825 1547 67 0 0 chr4 89491604 89491799 -94796863 + L1PA7 LINE L1 5623 5817 -337 331 314 93 52 chr4 89491904 89492311 -94796351 - L1M4 LINE L1 -1329 4817 4394 1328 176 79 39 chr4 89493710 89493835 -94794827 - MER2 DNA MER2_type 0 344 225 2429 46 0 0 chr4 89493835 89494144 -94794518 + AluY SINE Alu 1 309 0 1328 176 79 39 chr4 89494144 89494347 -94794315 - MER2 DNA MER2_type -119 225 2 457 328 30 38 chr4 89495812 89496074 -94792588 - MLT1I LTR MaLR -107 302 43 1691 140 0 0 chr4 89496093 89496328 -94792334 + AluSx SINE Alu 1 235 -77 28 61 0 0 chr4 89496541 89496590 -94792072 + AT_rich Low_complexity Low_complexity 1 49 0 2206 107 0 3 chr4 89496969 89497267 -94791395 - AluSq SINE Alu -15 298 2 25 83 0 0 chr4 89497941 89498001 -94790661 + AT_rich Low_complexity Low_complexity 1 60 0 739 275 16 5 chr4 89499166 89499355 -94789307 - MIR SINE MIR -70 192 2 8392 49 0 0 chr4 89499418 89501241 -94787421 - L1PA5 LINE L1 0 6154 4331 24 53 0 0 chr4 89501430 89501468 -94787194 + AT_rich Low_complexity Low_complexity 1 38 0 202 368 0 0 chr4 89501668 89501736 -94786926 + L2 LINE L2 3245 3312 -1 324 263 190 15 chr4 89502657 89502794 -94785868 - MIR SINE MIR -42 220 60 31 26 0 0 chr4 89503364 89503402 -94785260 + AT_rich Low_complexity Low_complexity 1 38 0 185 65 32 0 chr4 89503597 89503628 -94785034 + (TA)n Simple_repeat Simple_repeat 2 33 0 270 136 0 0 chr4 89504624 89504668 -94783994 + (CA)n Simple_repeat Simple_repeat 2 45 0 281 326 68 21 chr4 89504950 89505140 -94783522 - MIR3 SINE MIR -9 199 1 818 314 5 0 chr4 89505404 89505624 -94783038 - MIR SINE MIR 0 262 42 42985 30 21 1 chr4 89506511 89512542 -94776120 - L1HS LINE L1 0 6155 2 463 262 25 16 chr4 89513155 89513277 -94775385 + L2 LINE L2 3191 3313 0 216 351 74 49 chr4 89513400 89513725 -94774937 - L2 LINE L2 -835 2479 2147 1098 328 73 45 chr4 89514219 89515237 -94773425 - L2 LINE L2 0 3313 2260 364 278 89 47 chr4 89515474 89515643 -94773019 - MLT1L LTR MaLR -15 600 425 200 33 0 33 chr4 89515945 89515975 -94772687 + (CTATA)n Simple_repeat Simple_repeat 2 30 0 877 263 67 4 chr4 89516058 89516298 -94772364 - MIR SINE MIR -3 259 5 728 185 84 28 chr4 89516795 89516973 -94771689 - MER5A DNA MER1_type 0 189 2 22 56 0 0 chr4 89517591 89517627 -94771035 + AT_rich Low_complexity Low_complexity 1 36 0 363 299 30 85 chr4 89517818 89518019 -94770643 - MIR3 SINE MIR -1 207 18 404 326 80 6 chr4 89519977 89520152 -94768510 - L2 LINE L2 -1 3312 3125 2036 137 29 17 chr4 89520270 89520555 -94768107 + MLT1B LTR MaLR 36 327 -63 2018 160 33 3 chr4 89520555 89520892 -94767770 + MER7A DNA MER2_type 1 345 -1 2036 137 29 17 chr4 89520892 89520957 -94767705 + MLT1B LTR MaLR 327 390 0 243 0 0 0 chr4 89520989 89521016 -94767646 + (A)n Simple_repeat Simple_repeat 1 27 0 446 302 68 82 chr4 89521022 89521376 -94767286 - L2 LINE L2 -412 2902 2554 21 0 0 0 chr4 89524108 89524129 -94764533 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr4 89524235 89524270 -94764392 + AT_rich Low_complexity Low_complexity 1 35 0 25 65 0 0 chr4 89524308 89524354 -94764308 + AT_rich Low_complexity Low_complexity 1 46 0 25 0 0 0 chr4 89524480 89524505 -94764157 + AT_rich Low_complexity Low_complexity 1 25 0 2609 55 0 0 chr4 89524753 89525061 -94763601 + AluY SINE Alu 1 308 -3 22 70 0 0 chr4 89526570 89526613 -94762049 + AT_rich Low_complexity Low_complexity 1 43 0 547 230 168 53 chr4 89526632 89526841 -94761821 - MIR SINE MIR -24 238 6 22 70 0 0 chr4 89528802 89528845 -94759817 + AT_rich Low_complexity Low_complexity 1 43 0 1463 201 133 36 chr4 89528845 89529318 -94759344 - LTR40a LTR ERVL 0 519 1 2950 220 23 8 chr4 89529327 89529969 -94758693 - MER82 DNA MER2_type -1 652 1 1056 249 45 68 chr4 89529993 89530649 -94758013 + L2 LINE L2 2639 3269 -44 246 81 0 0 chr4 89531710 89531747 -94756915 + (TG)n Simple_repeat Simple_repeat 2 38 0 1645 262 118 20 chr4 89532164 89532902 -94755760 - L2 LINE L2 -180 3133 2332 448 288 39 26 chr4 89532941 89533094 -94755568 + MIR SINE MIR 64 218 -44 205 359 142 0 chr4 89534219 89534325 -94754337 + L2 LINE L2 3143 3263 -9 237 261 212 73 chr4 89534437 89534602 -94754060 - L2 LINE L2 -1 3312 3125 187 281 35 0 chr4 89534717 89534774 -94753888 + L2 LINE L2 3251 3309 -4 276 331 47 91 chr4 89535215 89535469 -94753193 - L2 LINE L2 -2 3270 3028 24 0 0 0 chr4 89536351 89536375 -94752287 + AT_rich Low_complexity Low_complexity 1 24 0 262 342 58 71 chr4 89536678 89536833 -94751829 - L2 LINE L2 -4 3268 3116 479 217 64 70 chr4 89539655 89539839 -94748823 + MIR SINE MIR 21 207 -55 1929 149 3 22 chr4 89539892 89540208 -94748454 + AluSx SINE Alu 1 310 -2 966 337 41 17 chr4 89540227 89540639 -94748023 + MER115 DNA AcHobo 11 432 -261 382 265 88 0 chr4 89540660 89540762 -94747900 + Zaphod DNA AcHobo 3909 4019 -12 26 30 0 0 chr4 89541517 89541550 -94747112 + AT_rich Low_complexity Low_complexity 1 33 0 225 204 23 0 chr4 89541963 89542007 -94746655 - Charlie8 DNA MER1_type 0 2417 2373 25 51 0 0 chr4 89542606 89542645 -94746017 + AT_rich Low_complexity Low_complexity 1 39 0 621 289 132 25 chr4 89543655 89543890 -94744772 - MIR SINE MIR -2 260 1 476 18 0 0 chr4 89544841 89544896 -94743766 - L1PA4 LINE L1 -190 5965 5911 327 64 0 0 chr4 89544896 89544988 -94743674 + L1PA3 LINE L1 6106 6201 0 43494 42 1 1 chr4 89545004 89551150 -94737512 + L1PA3 LINE L1 12 6155 0 823 121 0 0 chr4 89552068 89552192 -94736470 - MER31A LTR ERV1 0 485 362 363 255 52 46 chr4 89552256 89552409 -94736253 + L1ME4a LINE L1 5927 6080 -41 1498 151 104 9 chr4 89552778 89553096 -94735566 - MER31A LTR ERV1 -137 348 1 337 339 102 75 chr4 89553543 89553797 -94734865 + L2 LINE L2 2994 3254 -18 240 368 16 8 chr4 89553833 89553958 -94734704 + L2 LINE L2 2164 2289 -1025 258 246 0 18 chr4 89553963 89554020 -94734642 + MIR SINE MIR 19 74 -188 209 241 9 61 chr4 89554071 89554194 -94734468 + MIR SINE MIR 88 259 -3 3224 271 158 34 chr4 89554619 89556369 -94732293 - L2 LINE L2 -5 3308 1339 395 335 63 33 chr4 89556586 89556800 -94731862 - MIR SINE MIR -27 235 16 181 267 17 17 chr4 89556885 89556945 -94731717 + L2 LINE L2 3254 3313 0 254 275 204 49 chr4 89556950 89557092 -94731570 - MIR SINE MIR -71 191 28 2300 167 3 3 chr4 89557100 89557490 -94731172 + MLT1B LTR MaLR 1 390 0 312 219 83 0 chr4 89558112 89558208 -94730454 - L1ME4a LINE L1 -41 6080 5977 617 270 6 0 chr4 89558613 89558772 -94729890 - L1ME4a LINE L1 -406 5715 5556 336 227 38 8 chr4 89559034 89559166 -94729496 + (TTATA)n Simple_repeat Simple_repeat 5 140 0 314 257 19 95 chr4 89559696 89559801 -94728861 + MIR SINE MIR 47 143 -119 28 71 0 0 chr4 89560055 89560111 -94728551 + AT_rich Low_complexity Low_complexity 1 56 0 1165 252 41 63 chr4 89560168 89560580 -94728082 - L2 LINE L2 0 3313 2911 488 208 10 10 chr4 89560597 89560698 -94727964 + MIR SINE MIR 162 262 0 24 53 0 0 chr4 89560718 89560756 -94727906 + AT_rich Low_complexity Low_complexity 1 38 0 2107 100 7 0 chr4 89563097 89563396 -94725266 + AluSx SINE Alu 1 301 -11 317 280 59 53 chr4 89563908 89564104 -94724558 + MIR SINE MIR 5 211 -51 471 73 0 0 chr4 89564764 89564832 -94723830 - L1PA4 LINE L1 -3 6152 6085 1308 135 34 60 chr4 89565848 89566115 -94722547 + L1MA8 LINE L1 5995 6254 -37 533 372 10 5 chr4 89567038 89567245 -94721417 + MIR SINE MIR 16 223 -39 486 280 53 15 chr4 89567692 89567824 -94720838 - MIR SINE MIR -79 183 47 682 227 0 0 chr4 89569918 89570037 -94718625 + FLAM_A SINE Alu 3 121 -12 21 71 0 0 chr4 89570116 89570158 -94718504 + AT_rich Low_complexity Low_complexity 1 42 0 266 332 35 26 chr4 89570542 89570570 -94718092 - L1MB4 LINE L1 -274 5906 5879 725 300 68 17 chr4 89570570 89570923 -94717739 - L1ME3A LINE L1 -287 5883 5513 859 276 59 13 chr4 89570927 89571231 -94717431 - L2 LINE L2 0 3313 2996 1473 145 4 0 chr4 89571466 89571714 -94716948 - L1MA3 LINE L1 -3 7721 7473 * 7416 34 0 0 chr4 89571702 89572762 -94715900 - L1PA4 LINE L1 0 6155 5097 4587 120 25 16 chr4 89572773 89573523 -94715139 - L1MA3 LINE L1 -256 7468 6709 1219 137 0 5 chr4 89573527 89573717 -94714945 - AluSg/x SINE Alu 0 310 122 19176 176 52 13 chr4 89573717 89580191 -94708471 - L1MA3 LINE L1 -819 6746 18 367 279 82 50 chr4 89580210 89580429 -94708233 - L1ME3A LINE L1 -843 5303 5078 243 241 43 64 chr4 89580439 89580580 -94708082 - L1 LINE L1 -1098 5048 4911 28 71 0 0 chr4 89580706 89580762 -94707900 + AT_rich Low_complexity Low_complexity 1 56 0 270 0 0 0 chr4 89581637 89581667 -94706995 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 515 246 156 27 chr4 89581672 89581896 -94706766 - L2 LINE L2 -14 3299 3047 8131 154 3 0 chr4 89582139 89584264 -94704398 - L1PA11 LINE L1 -1 6173 4026 184 185 15 15 chr4 89584808 89584873 -94703789 + (TA)n Simple_repeat Simple_repeat 1 65 0 1110 61 0 0 chr4 89586182 89586314 -94702348 + AluY SINE Alu 1 132 -179 481 295 0 0 chr4 89586729 89586841 -94701821 + L2 LINE L2 3199 3310 -3 24 67 0 0 chr4 89587239 89587284 -94701378 + AT_rich Low_complexity Low_complexity 1 45 0 190 348 0 0 chr4 89588723 89588769 -94699893 - L2 LINE L2 -13 3259 3214 186 133 0 0 chr4 89589102 89589132 -94699530 + (TTG)n Simple_repeat Simple_repeat 2 31 0 600 332 65 0 chr4 89589698 89589915 -94698747 + MIR SINE MIR 32 262 0 2232 114 13 3 chr4 89590118 89590425 -94698237 - AluSx SINE Alu -2 310 1 182 333 164 30 chr4 89590443 89590608 -94698054 - MIR SINE MIR -27 235 49 307 325 109 37 chr4 89590726 89591129 -94697533 + L2 LINE L2 2358 2789 -525 29 0 0 0 chr4 89592666 89592695 -94695967 + AT_rich Low_complexity Low_complexity 1 29 0 1393 120 0 15 chr4 89592988 89593188 -94695474 - AluSg SINE Alu -11 301 105 27379 33 1 0 chr4 89593196 89597291 -94691371 - L1PA4 LINE L1 -3 6152 2056 800 149 0 0 chr4 89597291 89597405 -94691257 - AluSg SINE Alu -196 114 1 1483 103 5 0 chr4 89597757 89597951 -94690711 - AluSq SINE Alu -14 299 105 377 215 37 56 chr4 89598117 89598224 -94690438 + L2 LINE L2 3151 3255 -17 239 54 27 0 chr4 89598233 89598270 -94690392 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 363 349 21 10 chr4 89598277 89598469 -94690193 - L2 LINE L2 -980 2334 2141 2833 232 30 21 chr4 89598613 89599290 -94689372 - MER76 LTR ERV -5 683 1 192 262 0 0 chr4 89599290 89599332 -94689330 + MIR SINE MIR 95 136 -126 283 363 42 0 chr4 89599453 89599646 -94689016 - L2 LINE L2 -1357 1957 1757 213 235 0 0 chr4 89601124 89601175 -94687487 + A-rich Low_complexity Low_complexity 1 51 0 180 0 0 0 chr4 89601865 89601885 -94686777 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 406 345 26 22 chr4 89602223 89602449 -94686213 + MIR SINE MIR 26 252 -10 24 0 0 0 chr4 89602733 89602757 -94685905 + AT_rich Low_complexity Low_complexity 1 24 0 677 299 43 17 chr4 89604488 89604722 -94683940 - MIR SINE MIR -21 241 2 361 282 183 25 chr4 89605173 89605375 -94683287 + MIR SINE MIR 23 256 -6 671 231 0 0 chr4 89605649 89605783 -94682879 + AluJo SINE Alu 1 134 -178 457 259 45 0 chr4 89606158 89606270 -94682392 + MLT1I LTR MaLR 58 174 -235 830 326 133 30 chr4 89606277 89607150 -94681512 - L2 LINE L2 -251 3021 2067 2033 134 61 3 chr4 89608222 89608550 -94680112 + MER7A DNA MER2_type 2 346 0 207 0 0 0 chr4 89609366 89609389 -94679273 + (TA)n Simple_repeat Simple_repeat 2 24 0 497 303 143 0 chr4 89609469 89609707 -94678955 + L1MC/D LINE L1 5544 5815 -1993 2251 94 13 3 chr4 89609818 89610116 -94678546 + AluSx SINE Alu 1 301 -11 237 202 126 109 chr4 89610364 89610483 -94678179 - L2 LINE L2 -1 3312 3192 * 349 339 63 11 chr4 89610450 89610624 -94678038 + MIR SINE MIR 75 257 -5 5708 136 45 20 chr4 89610629 89611598 -94677064 + Tigger1 DNA MER2_type 1 993 -1425 2337 157 75 0 chr4 89611598 89612000 -94676662 - MSTB1 LTR MaLR 0 432 1 7774 133 81 5 chr4 89612003 89613329 -94675333 + Tigger1 DNA MER2_type 992 2418 0 203 159 45 0 chr4 89613979 89614023 -94674639 + T-rich Low_complexity Low_complexity 2 47 0 242 366 37 37 chr4 89615588 89615722 -94672940 + L2 LINE L2 3134 3267 -5 26 30 0 0 chr4 89616464 89616497 -94672165 + AT_rich Low_complexity Low_complexity 1 33 0 447 288 41 18 chr4 89618001 89618171 -94670491 + MIR SINE MIR 78 251 -11 219 362 47 16 chr4 89618248 89618375 -94670287 - L2 LINE L2 -5 3267 3137 309 149 37 103 chr4 89618452 89618559 -94670103 + MER5B DNA MER1_type 2 101 -77 2150 82 46 0 chr4 89618667 89618949 -94669713 + AluY SINE Alu 1 295 -16 231 310 122 28 chr4 89620345 89620523 -94668139 - MIR SINE MIR -16 246 38 2150 96 0 0 chr4 89620540 89620857 -94667805 - AluY SINE Alu 0 317 1 3513 60 2 0 chr4 89621531 89621979 -94666683 - L1PA5 LINE L1 0 6154 5706 1781 175 54 3 chr4 89622090 89622421 -94666241 - MER7A DNA MER2_type 0 346 1 1389 226 3 54 chr4 89624543 89624932 -94663730 - MLT1A2 LTR MaLR -2 372 4 278 356 33 56 chr4 89625494 89625764 -94662898 + L2 LINE L2 2852 3115 -157 2151 137 0 3 chr4 89625861 89626174 -94662488 + AluSx SINE Alu 1 312 0 29 0 0 0 chr4 89626382 89626411 -94662251 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 89627334 89627355 -94661307 + AT_rich Low_complexity Low_complexity 1 21 0 473 271 65 19 chr4 89628132 89628287 -94660375 + MIR SINE MIR 20 181 -81 207 238 123 90 chr4 89629403 89629525 -94659137 + MIR SINE MIR 20 145 -63 899 215 118 0 chr4 89629571 89629766 -94658896 + MER58A DNA MER1_type 6 223 -1 280 272 54 33 chr4 89631782 89631874 -94656788 + MIR SINE MIR 20 113 -95 216 182 0 0 chr4 89633113 89633157 -94655505 + (CA)n Simple_repeat Simple_repeat 1 44 0 227 77 0 26 chr4 89633797 89633836 -94654826 + (TA)n Simple_repeat Simple_repeat 2 39 0 1964 102 105 14 chr4 89634382 89634726 -94653936 - THE1C LTR MaLR 0 375 1 788 179 19 2 chr4 89634966 89635140 -94653522 - L1MB1 LINE L1 -3 6165 6006 518 187 28 0 chr4 89635331 89635438 -94653224 + MER103 DNA DNA 9 118 -48 1301 287 138 10 chr4 89635986 89636567 -94652095 - MER115 DNA AcHobo 0 693 39 202 135 0 27 chr4 89637121 89637158 -94651504 + (GAA)n Simple_repeat Simple_repeat 3 38 0 * 205 295 16 0 chr4 89637135 89637196 -94651466 + GA-rich Low_complexity Low_complexity 4 65 0 448 136 0 0 chr4 89640092 89640158 -94648504 + L2 LINE L2 3247 3312 -1 200 341 23 0 chr4 89640814 89640902 -94647760 + CT-rich Low_complexity Low_complexity 1 90 0 197 159 23 0 chr4 89641407 89641451 -94647211 + (TA)n Simple_repeat Simple_repeat 1 45 0 22 35 0 0 chr4 89643320 89643349 -94645313 + AT_rich Low_complexity Low_complexity 1 29 0 259 309 52 10 chr4 89643389 89643486 -94645176 - MIR3 SINE MIR -16 192 92 202 274 250 0 chr4 89643655 89643739 -94644923 - MIR3 SINE MIR -43 165 61 183 275 0 50 chr4 89644617 89644697 -94643965 - L2 LINE L2 -4 3309 3234 2199 128 0 3 chr4 89646580 89646885 -94641777 - AluSx SINE Alu -8 304 1 1472 300 32 23 chr4 89648123 89648715 -94639947 - L2 LINE L2 0 3313 2719 214 254 66 0 chr4 89649518 89649640 -94639022 + (CGGTG)n Simple_repeat Simple_repeat 3 132 0 1749 139 45 39 chr4 89649720 89650057 -94638605 + MER2 DNA MER2_type 7 345 0 231 36 0 0 chr4 89651078 89651106 -94637556 + (CA)n Simple_repeat Simple_repeat 1 28 0 475 316 65 47 chr4 89651355 89651570 -94637092 - MIR SINE MIR -24 238 20 2875 7 0 0 chr4 89651973 89652283 -94636379 + AluYa5 SINE Alu 1 310 -1 324 0 0 0 chr4 89652829 89652865 -94635797 + (CA)n Simple_repeat Simple_repeat 2 37 0 228 317 78 39 chr4 89653153 89653333 -94635329 - L2 LINE L2 -229 3043 2857 357 398 71 11 chr4 89653454 89653723 -94634939 - L2 LINE L2 -106 3166 2882 262 341 71 28 chr4 89653845 89654056 -94634606 - L2 LINE L2 -557 2757 2538 774 345 165 17 chr4 89654252 89655072 -94633590 - L2 LINE L2 -1261 2053 1113 917 201 75 0 chr4 89655231 89655430 -94633232 - MLT1J2 LTR MaLR -142 308 95 204 333 152 14 chr4 89655465 89655603 -94633059 - L2 LINE L2 -665 2649 2493 746 315 15 15 chr4 89655674 89655947 -94632715 + L2 LINE L2 3041 3313 0 2387 73 3 3 chr4 89656224 89656526 -94632136 + AluSx SINE Alu 1 302 -10 248 113 148 87 chr4 89656595 89656710 -94631952 + L1MA7 LINE L1 6144 6265 -26 1694 126 42 0 chr4 89658004 89658267 -94630395 + MER1B DNA MER1_type 1 274 -65 361 146 10 52 chr4 89658292 89658388 -94630274 + MER1B DNA MER1_type 242 333 0 470 129 0 0 chr4 89658740 89658810 -94629852 - AluSc SINE Alu -14 295 226 25 51 0 0 chr4 89658810 89658849 -94629813 + AT_rich Low_complexity Low_complexity 1 39 0 708 292 49 16 chr4 89658950 89659193 -94629469 + MIR SINE MIR 12 262 0 25 31 0 0 chr4 89663535 89663567 -94625095 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr4 89663715 89663744 -94624918 + AT_rich Low_complexity Low_complexity 1 29 0 23 78 0 0 chr4 89663780 89663831 -94624831 + AT_rich Low_complexity Low_complexity 1 51 0 998 233 133 47 chr4 89664100 89664567 -94624095 - MLT1E3 LTR MaLR -117 507 1 192 350 168 0 chr4 89664578 89664721 -94623941 - L2 LINE L2 -168 3145 2979 1933 115 17 24 chr4 89664727 89665037 -94623625 - AluSx SINE Alu 0 308 1 1761 155 81 0 chr4 89665087 89665409 -94623253 - MER7A DNA MER2_type 0 346 1 2257 126 0 0 chr4 89666062 89666372 -94622290 + AluSp SINE Alu 1 310 -3 388 349 0 0 chr4 89667172 89667298 -94621364 + MIR SINE MIR 17 142 -66 194 162 0 0 chr4 89667459 89667496 -94621166 - L2 LINE L2 -7 3306 3270 261 242 81 0 chr4 89667522 89667584 -94621078 + MIR3 SINE MIR 110 176 -32 23 33 0 0 chr4 89667739 89667769 -94620893 + AT_rich Low_complexity Low_complexity 1 30 0 28 48 0 0 chr4 89669675 89669717 -94618945 + AT_rich Low_complexity Low_complexity 1 42 0 246 95 0 0 chr4 89670558 89670600 -94618062 + (TG)n Simple_repeat Simple_repeat 1 42 0 204 40 0 0 chr4 89670602 89670627 -94618035 + (GA)n Simple_repeat Simple_repeat 2 26 0 2182 117 0 0 chr4 89671633 89671931 -94616731 + AluSg SINE Alu 1 298 -12 1782 196 0 17 chr4 89672442 89672794 -94615868 - MER7A DNA MER2_type -1 345 2 341 246 67 0 chr4 89673415 89673549 -94615113 + MER103 DNA DNA 4 146 -20 1984 155 20 0 chr4 89673885 89674189 -94614473 + AluSx SINE Alu 1 310 -2 23 0 0 0 chr4 89674262 89674285 -94614377 + AT_rich Low_complexity Low_complexity 1 23 0 465 325 88 0 chr4 89675839 89675999 -94612663 - L2 LINE L2 -2 3270 3097 428 314 67 52 chr4 89676287 89676481 -94612181 + MIR SINE MIR 16 212 -50 320 326 94 78 chr4 89679715 89680034 -94608628 - L2 LINE L2 0 3272 2949 571 256 22 17 chr4 89680742 89680922 -94607740 - HAL1 LINE L1 -2185 322 142 278 236 112 25 chr4 89681057 89681218 -94607444 - L1M LINE L1 -2379 5429 5255 49 71 0 0 chr4 89681295 89681393 -94607269 + AT_rich Low_complexity Low_complexity 1 98 0 353 43 0 0 chr4 89681562 89681608 -94607054 - MADE1 DNA Mariner 0 80 35 1998 198 37 30 chr4 89682733 89683162 -94605500 + MSTB1 LTR MaLR 1 432 0 504 362 38 32 chr4 89683221 89683696 -94604966 + HERV16 LTR ERVL 1051 1528 -3468 1911 183 42 69 chr4 89683719 89684206 -94604456 + MLT1D LTR MaLR 1 475 -30 2094 188 8 13 chr4 89684206 89684604 -94604058 + MLT2C1 LTR ERVL 2 397 0 1911 183 42 69 chr4 89684604 89684635 -94604027 + MLT1D LTR MaLR 475 505 0 736 364 33 25 chr4 89684887 89685376 -94603286 + HERV16 LTR ERVL 1989 2481 -3283 370 299 58 45 chr4 89685655 89685809 -94602853 + HERV16 LTR ERVL 2557 2712 -2284 512 253 130 55 chr4 89685897 89686150 -94602512 + LTR47A LTR ERVL 1 272 -180 261 93 0 0 chr4 89686251 89686343 -94602319 + L1PA3 LINE L1 6110 6201 0 7956 65 110 6 chr4 89686359 89687530 -94601132 + L1P LINE L1 12 1304 -4842 21 0 0 0 chr4 89687697 89687718 -94600944 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr4 89687741 89687764 -94600898 + (T)n Simple_repeat Simple_repeat 1 23 0 6103 38 0 0 chr4 89687766 89688529 -94600133 - L1HS LINE L1 -1 6154 5392 3856 149 9 9 chr4 89688529 89689241 -94599421 - L1PA6 LINE L1 -9 6145 5436 41989 36 22 1 chr4 89689341 89695054 -94593608 - L1PA3 LINE L1 -129 6026 192 1671 281 68 63 chr4 89745206 89746351 -94542311 - L2 LINE L2 0 3313 2177 217 194 45 104 chr4 89746359 89746426 -94542236 - L2 LINE L2 -3166 148 86 1423 52 0 0 chr4 89748194 89748368 -94540294 - AluY SINE Alu -1 310 137 2241 85 0 23 chr4 89748588 89748895 -94539767 - AluSg SINE Alu -10 300 1 1465 175 32 6 chr4 89751676 89751991 -94536671 + MER33 DNA MER1_type 1 323 -1 674 215 52 41 chr4 89752072 89752244 -94536418 + MIR SINE MIR 16 189 -73 1989 182 83 2 chr4 89752452 89752848 -94535814 + MSTA LTR MaLR 1 428 0 872 189 18 83 chr4 89754144 89754361 -94534301 + MER20 DNA MER1_type 2 204 -15 2284 94 3 7 chr4 89754396 89754703 -94533959 + AluSx SINE Alu 1 306 -6 328 345 95 0 chr4 89754884 89755052 -94533610 + MIR SINE MIR 48 231 -31 384 340 94 19 chr4 89755111 89755429 -94533233 + L2 LINE L2 1880 2221 -1093 331 314 25 25 chr4 89755545 89755666 -94532996 + L2 LINE L2 3102 3222 -50 2269 84 13 0 chr4 89755808 89756106 -94532556 - AluSp SINE Alu -11 302 1 241 287 11 69 chr4 89756210 89756297 -94532365 + L2 LINE L2 3189 3270 -2 186 103 0 0 chr4 89758069 89758098 -94530564 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 22 35 0 0 chr4 89758214 89758243 -94530419 + AT_rich Low_complexity Low_complexity 1 29 0 836 293 23 5 chr4 89758265 89758480 -94530182 - MIR SINE MIR -40 222 4 401 221 38 113 chr4 89758608 89758821 -94529841 + MER112 DNA MER1_type 41 237 -23 295 313 125 21 chr4 89758821 89758965 -94529697 + MER5B DNA MER1_type 19 177 -1 7345 150 19 1 chr4 89759320 89761381 -94527281 - L1PA11 LINE L1 -2 6172 4091 2087 140 138 5 chr4 89761477 89761855 -94526807 + MSTA LTR MaLR 1 428 0 1513 192 134 0 chr4 89761855 89762160 -94526502 - MER7A DNA MER2_type 0 346 1 34 0 0 0 chr4 89762447 89762481 -94526181 + AT_rich Low_complexity Low_complexity 1 34 0 668 101 52 9 chr4 89762593 89762941 -94525721 + (TA)n Simple_repeat Simple_repeat 1 363 0 651 107 48 0 chr4 89762959 89763406 -94525256 + (TA)n Simple_repeat Simple_repeat 1 468 0 195 126 58 11 chr4 89763418 89763505 -94525157 + (TA)n Simple_repeat Simple_repeat 2 92 0 734 197 163 6 chr4 89764432 89764610 -94524052 - MER20 DNA MER1_type -13 206 1 2287 130 28 6 chr4 89764959 89765313 -94523349 + THE1B LTR MaLR 1 362 -2 315 331 84 19 chr4 89765517 89765780 -94522882 - MLT1J1 LTR MaLR -9 437 158 712 344 66 5 chr4 89765780 89766161 -94522501 + ERVL LTR ERVL 4626 5029 -735 882 144 0 0 chr4 89767067 89767192 -94521470 + FLAM_C SINE Alu 3 127 -6 304 221 0 36 chr4 89767232 89767372 -94521290 + T-rich Low_complexity Low_complexity 1 135 0 1884 230 138 7 chr4 89767582 89767766 -94520896 + L1MC4 LINE L1 6460 6619 -1423 456 91 0 0 chr4 89767766 89767832 -94520830 + (TG)n Simple_repeat Simple_repeat 1 66 0 1884 230 138 7 chr4 89767832 89768204 -94520458 + L1MC4 LINE L1 6619 7089 -953 2464 223 45 12 chr4 89768206 89768601 -94520061 + L1MC4 LINE L1 7240 7666 -376 797 143 8 15 chr4 89768601 89768734 -94519928 + FLAM_A SINE Alu 1 132 -1 2464 223 45 12 chr4 89768734 89768980 -94519682 + L1MC4 LINE L1 7666 7902 -140 4380 129 15 4 chr4 89769181 89769861 -94518801 - L1PA15 LINE L1 -19 6146 5460 1160 294 26 39 chr4 89769885 89770345 -94518317 + ERVL LTR ERVL 2185 2638 -3126 240 279 66 59 chr4 89770590 89770726 -94517936 + MLT1J2 LTR MaLR 232 368 -222 929 276 29 32 chr4 89770835 89771176 -94517486 - MER58B DNA MER1_type 0 341 2 501 326 46 15 chr4 89771179 89771375 -94517287 - MLT1J2 LTR MaLR -8 442 241 445 147 0 53 chr4 89772171 89772266 -94516396 - L1MB4 LINE L1 -2 6178 6089 309 285 62 54 chr4 89772565 89772695 -94515967 + MLT1I LTR MaLR 106 236 -173 249 227 11 57 chr4 89772757 89772845 -94515817 + MLT1J2 LTR MaLR 367 450 0 31 26 0 0 chr4 89773080 89773118 -94515544 + AT_rich Low_complexity Low_complexity 1 38 0 449 305 89 16 chr4 89773179 89773425 -94515237 - L1ME LINE L1 -529 5592 5329 2859 88 0 75 chr4 89773445 89773913 -94514749 - L1PA7 LINE L1 -2 6152 5720 3281 69 6 0 chr4 89773913 89774651 -94514011 + L1P3 LINE L1 4933 5674 -480 25 63 0 38 chr4 89774685 89774764 -94513898 + AT_rich Low_complexity Low_complexity 1 76 0 11214 127 39 2 chr4 89775348 89777114 -94511548 + L1MA2 LINE L1 1359 3189 -4376 9734 113 24 20 chr4 89777124 89777899 -94510763 - L1PA7 LINE L1 -15 6454 5684 243 0 0 0 chr4 89777899 89777926 -94510736 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9734 113 24 20 chr4 89777926 89783243 -94505419 - L1PA7 LINE L1 -785 5684 8 16418 158 7 15 chr4 89783250 89783356 -94505306 + L1MA2 LINE L1 3175 3280 -4443 1249 136 54 23 chr4 89783356 89783577 -94505085 + MER30 DNA MER1_type 3 230 0 16418 158 7 15 chr4 89783577 89788050 -94500612 + L1MA2 LINE L1 3280 7722 -1 25 31 0 0 chr4 89788051 89788083 -94500579 + AT_rich Low_complexity Low_complexity 1 32 0 416 343 34 17 chr4 89788094 89788272 -94500390 - MIR3 SINE MIR -7 201 21 5652 141 20 15 chr4 89790280 89791452 -94497210 - L1PA16 LINE L1 0 6166 4987 4724 199 11 39 chr4 89791451 89792623 -94496039 + L1PA16 LINE L1 3836 4974 -1172 * 786 281 26 4 chr4 89793480 89793708 -94494954 - MIR SINE MIR -28 234 2 5088 90 21 7 chr4 89795168 89795880 -94492782 + L1PA11 LINE L1 5448 6169 -5 277 294 169 7 chr4 89796736 89796872 -94491790 - MER5A DNA MER1_type -24 165 8 31 26 0 0 chr4 89797227 89797265 -94491397 + AT_rich Low_complexity Low_complexity 1 38 0 227 348 51 43 chr4 89797471 89797609 -94491053 - L2 LINE L2 -19 3253 3115 5888 178 36 13 chr4 89797918 89800129 -94488533 + L1PA16 LINE L1 3895 6163 -3 2235 109 26 0 chr4 89800227 89800531 -94488131 + AluSx SINE Alu 1 312 0 1620 183 118 6 chr4 89800730 89801086 -94487576 + MSTD LTR MaLR 1 396 0 1126 261 43 7 chr4 89801288 89801568 -94487094 + L1MB1 LINE L1 1 290 -5601 10271 214 36 22 chr4 89801572 89805074 -94483588 + L1MB1 LINE L1 2292 5685 -307 2220 92 0 4 chr4 89805080 89805400 -94483262 - AluY SINE Alu 0 319 1 324 252 108 18 chr4 89805407 89805518 -94483144 - HAL1 LINE L1 -1036 1471 1351 1775 190 52 3 chr4 89805778 89806126 -94482536 + MLT1A1 LTR MaLR 1 365 0 359 293 98 68 chr4 89806129 89806395 -94482267 - HAL1 LINE L1 -2199 308 35 1706 146 125 0 chr4 89806461 89806782 -94481880 - MER46B DNA MER2_type 0 236 1 430 245 20 40 chr4 89807230 89807393 -94481269 - MLT1J LTR MaLR -22 470 268 4914 66 0 0 chr4 89807696 89808318 -94480344 + L1PA7 LINE L1 5533 6154 0 21 71 0 0 chr4 89809554 89809596 -94479066 + AT_rich Low_complexity Low_complexity 1 42 0 279 238 12 38 chr4 89809737 89809817 -94478845 - MIR SINE MIR -66 196 119 186 43 0 0 chr4 89810744 89810767 -94477895 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 314 241 204 0 chr4 89811902 89812010 -94476652 + MIR SINE MIR 4 133 -129 271 397 16 8 chr4 89812084 89812210 -94476452 + MER5A DNA MER1_type 52 178 -11 571 224 0 0 chr4 89812488 89812595 -94476067 - FLAM_A SINE Alu -35 107 1 677 93 0 21 chr4 89812627 89812762 -94475900 + AluSg/x SINE Alu 198 312 0 246 128 0 0 chr4 89812777 89812824 -94475838 + Alu SINE Alu 256 302 0 197 214 186 29 chr4 89813042 89813112 -94475550 - L2 LINE L2 -6 3307 3227 1094 236 31 20 chr4 89813167 89813460 -94475202 + L1MD3 LINE L1 7699 7994 -1 1401 151 5 0 chr4 89813503 89813708 -94474954 - AluJo SINE Alu -21 291 86 331 305 8 51 chr4 89814222 89814340 -94474322 - L2 LINE L2 -1 3312 3200 183 156 0 0 chr4 89814362 89814394 -94474268 + T-rich Low_complexity Low_complexity 4 35 0 2864 147 8 10 chr4 89815638 89816136 -94472526 - L1MA4 LINE L1 -6 6294 5798 2161 116 0 3 chr4 89816158 89816460 -94472202 - AluSx SINE Alu -11 301 1 534 117 0 0 chr4 89816460 89816537 -94472125 - L1MA4 LINE L1 -614 5686 5610 1552 197 24 14 chr4 89817104 89817399 -94471263 - AluJo SINE Alu -14 298 1 180 292 15 15 chr4 89817484 89817549 -94471113 + L2 LINE L2 3167 3231 -82 2119 234 11 35 chr4 89817674 89818222 -94470440 - L1MC4a LINE L1 -1 7807 7273 219 353 36 36 chr4 89818527 89818694 -94469968 - L2 LINE L2 -247 3025 2859 270 0 0 0 chr4 89818816 89818846 -94469816 + (TC)n Simple_repeat Simple_repeat 1 30 0 180 0 0 0 chr4 89818845 89818865 -94469797 + (CA)n Simple_repeat Simple_repeat 1 20 0 * 1336 261 20 45 chr4 89819648 89820050 -94468612 + MLT1E LTR MaLR 200 591 -2 900 270 306 2 chr4 89820053 89820205 -94468457 + MLT1E-int LTR MaLR 14 119 -1252 1838 142 33 10 chr4 89820205 89820508 -94468154 + AluJb SINE Alu 1 310 -2 900 270 306 2 chr4 89820508 89820810 -94467852 + MLT1E-int LTR MaLR 119 606 -765 361 340 6 19 chr4 89821021 89821180 -94467482 + MLT1E-int LTR MaLR 692 848 -523 779 251 51 115 chr4 89821416 89821851 -94466811 + MLT1E-int LTR MaLR 961 1367 -4 527 178 195 34 chr4 89821854 89821972 -94466690 + MLT1E LTR MaLR 1 137 -456 1426 164 137 4 chr4 89822931 89823193 -94465469 + AluJo SINE Alu 1 297 -5 225 0 0 0 chr4 89823433 89823458 -94465204 + (TTA)n Simple_repeat Simple_repeat 1 25 0 988 194 106 38 chr4 89823577 89823870 -94464792 + Charlie4a DNA MER1_type 174 486 -22 998 227 227 15 chr4 89823968 89824492 -94464170 - L1ME LINE L1 -2677 3403 2769 1534 231 97 73 chr4 89824496 89825153 -94463509 - L1ME LINE L1 -4634 1446 749 1693 154 3 68 chr4 89825153 89825464 -94463198 + AluJb SINE Alu 1 291 -21 1534 231 97 73 chr4 89825464 89825894 -94462768 - L1ME LINE L1 -5331 749 331 1803 217 76 9 chr4 89825895 89826328 -94462334 - MLT1C LTR MaLR 0 467 6 782 270 53 50 chr4 89826336 89826477 -94462185 - L1ME LINE L1 -5738 332 193 369 0 0 0 chr4 89826477 89826518 -94462144 + (TA)n Simple_repeat Simple_repeat 2 42 0 782 270 53 50 chr4 89826518 89826695 -94461967 - L1ME LINE L1 -5877 193 13 2311 123 36 25 chr4 89826696 89827055 -94461607 + THE1B LTR MaLR 2 364 0 12143 86 2 1 chr4 89827055 89828633 -94460029 + THE1B-int LTR MaLR 1 1580 0 2379 131 28 14 chr4 89828633 89828992 -94459670 + THE1B LTR MaLR 1 364 0 484 226 60 70 chr4 89829202 89829401 -94459261 - MIR SINE MIR 0 262 66 198 118 0 0 chr4 89829820 89829854 -94458808 + (TG)n Simple_repeat Simple_repeat 1 34 0 447 309 124 27 chr4 89831477 89831849 -94456813 - LTR33 LTR ERVL 0 521 114 560 305 47 21 chr4 89832506 89832696 -94455966 - MIR3 SINE MIR -1 207 13 228 167 0 0 chr4 89834060 89834108 -94454554 + (TG)n Simple_repeat Simple_repeat 2 49 0 960 214 93 37 chr4 89834349 89834507 -94454155 + MLT1A2 LTR MaLR 1 149 -225 1708 118 76 45 chr4 89834507 89834796 -94453866 + AluSx SINE Alu 1 298 -14 960 214 93 37 chr4 89834796 89834828 -94453834 + MLT1A2 LTR MaLR 149 178 -196 1066 100 11 11 chr4 89834828 89835008 -94453654 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 960 214 93 37 chr4 89835008 89835238 -94453424 + MLT1A2 LTR MaLR 178 374 0 486 300 88 0 chr4 89836029 89836189 -94452473 + MER96 DNA MER1_type? 1 174 -1 1415 191 229 3 chr4 89836659 89837026 -94451636 + MSTB2 LTR MaLR 1 450 -7 724 326 83 11 chr4 89837038 89837400 -94451262 - LTR16B LTR ERVL -76 388 1 275 301 139 46 chr4 89837401 89837747 -94450915 + L2 LINE L2 401 778 -2536 357 267 42 61 chr4 89837835 89838000 -94450662 + L2 LINE L2 3151 3312 -1 201 74 0 0 chr4 89838036 89838063 -94450599 + (AATTG)n Simple_repeat Simple_repeat 3 29 0 1678 139 20 37 chr4 89838269 89838564 -94450098 - AluJo SINE Alu -18 294 5 202 226 12 36 chr4 89838837 89838921 -94449741 + T-rich Low_complexity Low_complexity 1 82 0 255 122 0 0 chr4 89839461 89839510 -94449152 + (TA)n Simple_repeat Simple_repeat 1 49 0 237 185 0 0 chr4 89839559 89839624 -94449038 + (TA)n Simple_repeat Simple_repeat 2 66 0 877 349 38 26 chr4 89839628 89840130 -94448532 + L2 LINE L2 2198 2705 -609 6523 51 2 0 chr4 89840153 89840956 -94447706 - L1PA6 LINE L1 -11 6143 5339 * 13751 100 24 15 chr4 89840955 89842073 -94446589 - L1P LINE L1 -3617 2529 1423 2324 92 3 0 chr4 89842073 89842368 -94446294 - AluY SINE Alu -15 296 1 13751 100 24 15 chr4 89842368 89843748 -94444914 - L1P LINE L1 -4723 1423 11 191 103 26 0 chr4 89843802 89843841 -94444821 + A-rich Low_complexity Low_complexity 1 40 0 2022 100 52 0 chr4 89843960 89844251 -94444411 - AluSx SINE Alu 0 305 1 242 272 97 3 chr4 89844444 89844547 -94444115 - MIR SINE MIR -77 131 44 315 371 60 0 chr4 89844869 89844985 -94443677 + L2 LINE L2 3134 3256 -16 306 0 0 0 chr4 89845284 89845318 -94443344 + (CA)n Simple_repeat Simple_repeat 2 35 0 14556 134 27 8 chr4 89845719 89848090 -94440572 + Tigger1 DNA MER2_type 1 2417 -1 326 362 95 23 chr4 89848215 89848436 -94440226 + MIR SINE MIR 20 256 -6 2164 109 76 25 chr4 89848759 89849116 -94439546 + THE1C LTR MaLR 1 375 0 430 260 0 143 chr4 89849126 89849322 -94439340 + MER5B DNA MER1_type 1 168 -10 25 0 0 0 chr4 89849442 89849467 -94439195 + AT_rich Low_complexity Low_complexity 1 25 0 203 184 0 0 chr4 89850613 89850651 -94438011 + T-rich Low_complexity Low_complexity 1 38 0 215 179 18 18 chr4 89852233 89852289 -94436373 + A-rich Low_complexity Low_complexity 2 57 0 26 0 0 0 chr4 89852502 89852528 -94436134 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr4 89853176 89853198 -94435464 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 89854171 89854194 -94434468 + AT_rich Low_complexity Low_complexity 1 23 0 718 271 18 37 chr4 89854313 89854531 -94434131 - MIR SINE MIR -38 224 11 2125 122 3 0 chr4 89854550 89854846 -94433816 - AluSg SINE Alu -13 297 1 1575 164 10 69 chr4 89856353 89856658 -94432004 - AluSx SINE Alu -17 295 9 303 333 8 26 chr4 89856721 89856838 -94431824 + L1MC4 LINE L1 6589 6703 -1339 676 148 0 57 chr4 89856854 89856976 -94431686 - FLAM_A SINE Alu -22 120 6 253 0 54 0 chr4 89856988 89857025 -94431637 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 29 0 0 0 chr4 89857153 89857182 -94431480 + AT_rich Low_complexity Low_complexity 1 29 0 278 314 49 41 chr4 89857321 89857479 -94431183 + MIR SINE MIR 16 173 -58 6388 30 10 5 chr4 89857850 89858630 -94430032 - L1PA3 LINE L1 -1443 4703 3920 7696 23 0 1 chr4 89858632 89860088 -94428574 + L1PA3 LINE L1 4698 6152 -3 1165 220 51 104 chr4 89861502 89861809 -94426853 - MLT1C LTR MaLR -2 465 191 1951 136 3 11 chr4 89861809 89862128 -94426534 - AluSx SINE Alu 0 317 1 1165 220 51 104 chr4 89862128 89862310 -94426352 - MLT1C LTR MaLR -276 191 1 22 0 0 0 chr4 89864465 89864487 -94424175 + AT_rich Low_complexity Low_complexity 1 22 0 233 146 18 36 chr4 89864710 89864765 -94423897 - LTR33A LTR ERVL -3 520 467 2064 123 17 0 chr4 89865823 89866116 -94422546 + AluSx SINE Alu 1 298 -14 249 378 74 0 chr4 89866238 89866386 -94422276 - L2 LINE L2 -5 3267 3109 530 271 160 37 chr4 89866612 89866881 -94421781 - MER102b DNA MER1_type -39 302 1 1916 100 0 115 chr4 89867331 89867466 -94421196 + AluSx SINE Alu 2 151 -151 2302 76 0 3 chr4 89867466 89867755 -94420907 + AluY SINE Alu 1 288 -23 1916 100 0 115 chr4 89867755 89867958 -94420704 + AluSx SINE Alu 151 301 -1 21 36 0 0 chr4 89869279 89869307 -94419355 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr4 89869554 89869578 -94419084 + AT_rich Low_complexity Low_complexity 1 24 0 437 303 207 10 chr4 89870742 89870950 -94417712 + MIR SINE MIR 11 259 -3 273 139 0 0 chr4 89871377 89871426 -94417236 - MLT2B1 LTR ERVL -8 546 408 1438 211 36 35 chr4 89871476 89871849 -94416813 - MLT2B1 LTR ERVL -53 361 1 502 55 0 0 chr4 89872013 89872086 -94416576 - Alu SINE Alu -2 307 235 258 61 0 0 chr4 89872086 89872119 -94416543 - Alu SINE Alu -267 33 1 24 32 0 0 chr4 89872170 89872201 -94416461 + AT_rich Low_complexity Low_complexity 1 31 0 580 223 0 0 chr4 89872875 89873007 -94415655 + FLAM_A SINE Alu 3 134 0 434 273 94 16 chr4 89873627 89873755 -94414907 - L2 LINE L2 0 3313 3176 188 308 46 0 chr4 89873843 89873908 -94414754 + L2 LINE L2 3166 3233 -39 1436 193 29 11 chr4 89874016 89874290 -94414372 + AluJo SINE Alu 1 279 -33 246 32 0 0 chr4 89874290 89874321 -94414341 + (GGGAA)n Simple_repeat Simple_repeat 2 32 0 437 95 40 0 chr4 89874345 89874419 -94414243 + A-rich Low_complexity Low_complexity 5 81 0 636 293 99 43 chr4 89874420 89874602 -94414060 - MLT1G LTR MaLR -27 563 393 1176 117 10 25 chr4 89874602 89874799 -94413863 - L1PA16 LINE L1 -9 6157 5964 636 293 99 43 chr4 89874799 89875152 -94413510 - MLT1G LTR MaLR -197 393 26 1571 164 7 115 chr4 89875152 89875561 -94413101 - MLT1A1 LTR MaLR 0 365 1 636 293 99 43 chr4 89875561 89875589 -94413073 - MLT1G LTR MaLR -564 26 1 7623 26 1 0 chr4 89877188 89878852 -94409810 + L1PA4 LINE L1 4491 6155 0 2245 263 54 31 chr4 89878902 89879950 -94408712 + L1MC4 LINE L1 6760 7831 -211 302 112 0 0 chr4 89879957 89880012 -94408650 + Alu SINE Alu 1 41 -261 581 224 53 53 chr4 89880048 89880218 -94408444 - MIR SINE MIR -91 171 2 1887 134 16 23 chr4 89880285 89880590 -94408072 + AluSx SINE Alu 1 303 -9 1949 88 38 69 chr4 89882153 89882473 -94406189 + L1PA11 LINE L1 5865 6174 0 394 345 41 18 chr4 89882672 89882843 -94405819 + MIR SINE MIR 49 223 -39 549 224 53 53 chr4 89883231 89883401 -94405261 - MIR SINE MIR -91 171 2 591 280 76 6 chr4 89883680 89883837 -94404825 - MER5A DNA MER1_type 0 189 22 397 218 100 0 chr4 89886468 89886578 -94402084 - MIR SINE MIR -29 233 113 2669 112 0 6 chr4 89886858 89887224 -94401438 + THE1B LTR MaLR 1 364 0 2724 165 12 4 chr4 89887234 89887743 -94400919 - L1MC2 LINE L1 -24 6320 5808 209 288 68 27 chr4 89887787 89887860 -94400802 - L2 LINE L2 -47 3225 3150 1143 214 115 33 chr4 89887879 89888244 -94400418 - MSTD LTR MaLR -1 395 1 196 293 0 80 chr4 89888335 89888410 -94400252 - L2 LINE L2 -190 3082 3014 350 189 209 71 chr4 89888528 89888724 -94399938 + L2 LINE L2 3091 3313 0 3110 143 91 15 chr4 89888899 89889286 -94399376 - MER7C DNA MER2_type -2439 589 146 2303 94 0 0 chr4 89889286 89889583 -94399079 - AluSg1 SINE Alu -6 303 7 3110 143 91 15 chr4 89889583 89889742 -94398920 - MER7C DNA MER2_type -2882 146 1 6291 123 15 32 chr4 89890303 89891412 -94397250 - L1MA3 LINE L1 0 6305 5217 2389 298 133 42 chr4 89891434 89892760 -94395902 + L2 LINE L2 720 1923 -1390 1366 108 59 22 chr4 89892760 89892982 -94395680 + MER30 DNA MER1_type 1 230 0 2389 298 133 42 chr4 89892982 89893969 -94394693 + L2 LINE L2 1923 3252 -61 244 146 24 0 chr4 89894312 89894353 -94394309 + L1MB5 LINE L1 6079 6120 -54 23 33 0 0 chr4 89894644 89894674 -94393988 + AT_rich Low_complexity Low_complexity 1 30 0 1825 151 7 21 chr4 89894703 89895016 -94393646 + AluJo SINE Alu 1 309 0 745 237 50 7 chr4 89895016 89895345 -94393317 + MSTD LTR MaLR 16 396 0 2150 127 0 7 chr4 89895612 89895911 -94392751 + AluSx SINE Alu 1 297 -15 388 264 31 8 chr4 89896736 89896865 -94391797 + L1M4 LINE L1 3588 3719 -2427 282 203 89 101 chr4 89896865 89896951 -94391711 + L1M4 LINE L1 3154 3239 -2907 1586 178 20 24 chr4 89896951 89897243 -94391419 + AluJo SINE Alu 3 293 -19 282 203 89 101 chr4 89897243 89897314 -94391348 + L1M4 LINE L1 3239 3309 -2837 2651 103 28 0 chr4 89897314 89897710 -94390952 + L1PA10 LINE L1 5750 6156 -12 1141 153 0 0 chr4 89897718 89897894 -94390768 + AluJb SINE Alu 129 304 -8 7517 172 12 27 chr4 89897896 89900795 -94387867 + L1PA3 LINE L1 3301 6155 0 2543 197 25 5 chr4 89900795 89901678 -94386984 + L1M4 LINE L1 4747 5644 -534 531 108 54 11 chr4 89901678 89901768 -94386894 + L1PA13 LINE L1 6061 6157 -6 189 74 0 0 chr4 89901829 89901856 -94386806 + (TC)n Simple_repeat Simple_repeat 2 28 0 7709 22 0 0 chr4 89902154 89903611 -94385051 - L1PA3 LINE L1 -2 6153 4698 6388 30 10 5 chr4 89903613 89904393 -94384269 + L1PA3 LINE L1 3920 4703 -1443 278 314 49 41 chr4 89904764 89904922 -94383740 - MIR SINE MIR -58 150 16 29 0 0 0 chr4 89905061 89905090 -94383572 + AT_rich Low_complexity Low_complexity 1 29 0 253 0 54 0 chr4 89905218 89905255 -94383407 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 676 148 0 57 chr4 89905267 89905389 -94383273 + FLAM_A SINE Alu 6 120 -22 303 333 8 26 chr4 89905405 89905522 -94383140 - L1MC4 LINE L1 -1339 6703 6589 1575 164 10 69 chr4 89905585 89905890 -94382772 + AluSx SINE Alu 9 295 -17 2090 121 3 3 chr4 89907397 89907694 -94380968 + AluSg SINE Alu 1 297 -13 702 275 18 37 chr4 89907713 89907931 -94380731 + MIR SINE MIR 11 224 -38 23 0 0 0 chr4 89908050 89908073 -94380589 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr4 89909046 89909068 -94379594 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr4 89909716 89909742 -94378920 + AT_rich Low_complexity Low_complexity 1 26 0 215 179 18 18 chr4 89909955 89910011 -94378651 + T-rich Low_complexity Low_complexity 2 57 0 203 184 0 0 chr4 89911593 89911631 -94377031 + A-rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr4 89912779 89912804 -94375858 + AT_rich Low_complexity Low_complexity 1 25 0 430 260 0 143 chr4 89912924 89913120 -94375542 - MER5B DNA MER1_type -10 168 1 2164 109 76 25 chr4 89913130 89913487 -94375175 - THE1C LTR MaLR 0 375 1 326 362 95 23 chr4 89913810 89914031 -94374631 - MIR SINE MIR -6 256 20 14508 135 27 8 chr4 89914156 89916527 -94372135 - Tigger1 DNA MER2_type -1 2417 1 270 0 0 0 chr4 89916928 89916958 -94371704 + (TG)n Simple_repeat Simple_repeat 2 31 0 315 371 60 0 chr4 89917257 89917373 -94371289 - L2 LINE L2 -16 3256 3134 242 272 97 3 chr4 89917695 89917798 -94370864 + MIR SINE MIR 44 153 -77 2023 100 52 0 chr4 89917991 89918282 -94370380 + AluSx SINE Alu 1 305 0 191 103 26 0 chr4 89918401 89918440 -94370222 + T-rich Low_complexity Low_complexity 1 40 0 15647 115 31 24 chr4 89918494 89919874 -94368788 + L1P LINE L1 11 1380 -4766 2333 91 3 0 chr4 89919874 89920170 -94368492 + AluY SINE Alu 1 297 -14 15647 115 31 24 chr4 89920170 89921287 -94367375 + L1P LINE L1 1380 2529 -3617 6495 51 2 0 chr4 89921287 89922089 -94366573 + L1PA6 LINE L1 5339 6143 -11 15647 115 31 24 chr4 89922089 89922107 -94366555 + L1P LINE L1 2529 2545 -3601 877 343 48 36 chr4 89922112 89922614 -94366048 - L2 LINE L2 -609 2705 2198 237 185 0 0 chr4 89922618 89922683 -94365979 + (TA)n Simple_repeat Simple_repeat 1 65 0 255 122 0 0 chr4 89922732 89922781 -94365881 + (TA)n Simple_repeat Simple_repeat 1 49 0 337 323 67 54 chr4 89923300 89923523 -94365139 - L3 LINE CR1 -95 1482 1257 330 26 0 0 chr4 89923523 89923562 -94365100 + (TG)n Simple_repeat Simple_repeat 2 40 0 2029 266 102 10 chr4 89923846 89924552 -94364110 + L1MEc LINE L1 380 1150 -5571 5798 191 9 23 chr4 89924552 89925825 -94362837 + L1MB2 LINE L1 4104 5336 -835 1905 154 0 16 chr4 89925825 89926131 -94362531 + AluSx SINE Alu 4 304 -8 5798 191 9 23 chr4 89926131 89926956 -94361706 + L1MB2 LINE L1 5336 6171 0 673 230 54 21 chr4 89926951 89927190 -94361472 + L1MEc LINE L1 1135 1381 -5340 * 438 269 83 59 chr4 89927197 89927376 -94361286 + L1MEc LINE L1 1657 1830 -4752 1986 67 7 60 chr4 89927376 89927658 -94361004 - AluY SINE Alu -16 295 29 438 269 83 59 chr4 89927658 89927701 -94360961 + L1MEc LINE L1 1830 1870 -4712 180 0 0 0 chr4 89927701 89927721 -94360941 + (CATAT)n Simple_repeat Simple_repeat 2 21 0 438 269 83 59 chr4 89927721 89927807 -94360855 + L1MEc LINE L1 1870 2021 -4561 228 318 101 50 chr4 89928298 89928477 -94360185 - L3 LINE CR1 -778 799 612 2086 96 0 4 chr4 89928785 89929056 -94359606 + AluSx SINE Alu 42 311 -1 26 74 0 0 chr4 89929905 89929959 -94358703 + AT_rich Low_complexity Low_complexity 1 54 0 2148 121 16 0 chr4 89930041 89930346 -94358316 - AluSq SINE Alu -3 310 1 4158 21 0 0 chr4 89930634 89931112 -94357550 - L1PA3 LINE L1 -1 6154 5677 282 204 32 0 chr4 89931594 89931687 -94356975 + CT-rich Low_complexity Low_complexity 2 97 0 221 220 0 34 chr4 89932260 89932319 -94356343 + L2 LINE L2 2714 2770 -544 23 33 0 0 chr4 89933088 89933118 -94355544 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 89933170 89933198 -94355464 + AT_rich Low_complexity Low_complexity 1 28 0 574 308 32 27 chr4 89933681 89933902 -94354760 + MIR SINE MIR 9 230 -32 318 318 220 23 chr4 89934388 89934602 -94354060 - MIR SINE MIR 0 262 7 462 267 0 0 chr4 89935621 89935722 -94352940 - L2 LINE L2 -4 3309 3209 466 326 30 49 chr4 89937988 89938252 -94350410 - MIR SINE MIR 0 262 4 21 36 0 0 chr4 89939045 89939073 -94349589 + AT_rich Low_complexity Low_complexity 1 28 0 348 344 91 36 chr4 89939099 89939407 -94349255 + L1MEd LINE L1 103 427 -5692 539 267 71 63 chr4 89939687 89940505 -94348157 + L1MEd LINE L1 697 1597 -893 313 292 59 27 chr4 89940505 89940813 -94347849 + L1MC4 LINE L1 7347 7672 -296 1833 142 10 19 chr4 89940896 89941205 -94347457 - AluSx SINE Alu -6 306 1 27 49 0 0 chr4 89941892 89941933 -94346729 + AT_rich Low_complexity Low_complexity 1 41 0 605 199 78 179 chr4 89942218 89942565 -94346097 + L1MD2 LINE L1 5929 6355 -2 4382 146 99 68 chr4 89942880 89943931 -94344731 + Tigger6a DNA MER2_type 1 1083 0 27 92 0 0 chr4 89944891 89944967 -94343695 + AT_rich Low_complexity Low_complexity 1 76 0 207 139 0 0 chr4 89945777 89945813 -94342849 + (A)n Simple_repeat Simple_repeat 1 36 0 1967 126 55 0 chr4 89945954 89946247 -94342415 + AluSx SINE Alu 1 309 -3 23 33 0 0 chr4 89946247 89946277 -94342385 + AT_rich Low_complexity Low_complexity 1 30 0 41 48 0 0 chr4 89946648 89946710 -94341952 + AT_rich Low_complexity Low_complexity 1 62 0 242 178 14 0 chr4 89946889 89946918 -94341744 + (TA)n Simple_repeat Simple_repeat 2 29 -46 745 212 68 86 chr4 89946918 89947140 -94341522 - MER20 DNA MER1_type -1 218 1 242 178 14 0 chr4 89947140 89947183 -94341479 + (TA)n Simple_repeat Simple_repeat 29 75 0 235 286 28 52 chr4 89947286 89947499 -94341163 + L1ME LINE L1 5659 5866 -255 23 54 0 0 chr4 89947672 89947709 -94340953 + AT_rich Low_complexity Low_complexity 1 37 0 273 291 42 61 chr4 89948555 89948992 -94339670 - L1ME2 LINE L1 -233 5931 5502 22 35 0 0 chr4 89950335 89950364 -94338298 + AT_rich Low_complexity Low_complexity 1 29 0 1247 55 12 6 chr4 89950638 89950803 -94337859 + AluY SINE Alu 146 311 0 792 248 171 58 chr4 89951274 89951690 -94336972 - MLT1J LTR MaLR -33 478 16 1521 227 75 94 chr4 89951719 89952597 -94336065 - L1MEc LINE L1 -4123 2273 1413 758 188 6 12 chr4 89952635 89952800 -94335862 - AluY SINE Alu 0 311 148 2438 54 6 25 chr4 89952911 89953228 -94335434 - AluY SINE Alu 0 311 1 363 272 76 27 chr4 89953246 89953470 -94335192 - L1MEc LINE L1 -5023 1373 1139 5788 159 13 19 chr4 89953480 89955298 -94333364 - L1MA6 LINE L1 0 6300 4492 1441 148 54 14 chr4 89955322 89955333 -94333329 + L1PB3 LINE L1 3885 3894 -2252 10312 112 36 10 chr4 89955333 89956873 -94331789 - THE1B-int LTR MaLR 0 1580 1 2478 127 3 3 chr4 89956873 89957236 -94331426 - THE1B LTR MaLR 0 364 2 1441 148 54 14 chr4 89957236 89957501 -94331161 + L1PB3 LINE L1 3893 4173 -1973 1835 120 87 75 chr4 89957501 89957667 -94330995 - THE1B LTR MaLR 0 364 201 1555 138 0 0 chr4 89957667 89957885 -94330777 + AluSg/x SINE Alu 85 302 -10 1835 120 87 75 chr4 89957885 89958076 -94330586 - THE1B LTR MaLR -163 201 3 8818 104 4 0 chr4 89958078 89959271 -94329391 - THE1B-int LTR MaLR 0 1580 383 207 108 27 0 chr4 89959273 89959310 -94329352 + T-rich Low_complexity Low_complexity 2 39 0 3033 72 0 17 chr4 89959316 89959733 -94328929 - LTR7 LTR ERV1 -40 410 1 2481 82 48 13 chr4 89959733 89960112 -94328550 - HERVH LTR ERV1 0 7713 7322 1406 111 23 9 chr4 89960110 89960327 -94328335 - HERVH LTR ERV1 -1894 5819 5600 * 4245 147 3 1 chr4 89960328 89960989 -94327673 - HERVH LTR ERV1 -2564 5149 4488 3393 115 0 6 chr4 89960991 89961496 -94327166 - HERVH LTR ERV1 -3720 3993 3492 953 133 7 0 chr4 89961486 89961636 -94327026 - HERVH LTR ERV1 -4423 3290 3140 * 19092 87 65 9 chr4 89961615 89964454 -94324208 - HERVH LTR ERV1 -4718 2995 1 723 86 0 19 chr4 89964456 89964561 -94324101 - LTR7 LTR ERV1 -2 448 346 2812 87 3 0 chr4 89964561 89964952 -94323710 - THE1B-int LTR MaLR -1188 392 1 2056 118 88 18 chr4 89964952 89965292 -94323370 - THE1B LTR MaLR 0 364 1 5696 160 19 8 chr4 89965292 89966895 -94321767 + L1PB3 LINE L1 4169 5791 -363 2011 128 50 37 chr4 89966955 89967331 -94321331 + L1PB3 LINE L1 5767 6147 -7 8365 197 58 64 chr4 89967350 89968729 -94319933 - L1MEc LINE L1 -1812 5753 4367 6633 166 16 7 chr4 89968729 89970769 -94317893 - L1PA13 LINE L1 -4 6159 4102 8365 197 58 64 chr4 89970769 89970998 -94317664 - L1MEc LINE L1 -3198 4367 4138 719 122 19 0 chr4 89970998 89971105 -94317557 - AluSg/x SINE Alu -17 293 185 8365 197 58 64 chr4 89971105 89971298 -94317364 - L1MEc LINE L1 -3427 4138 3945 1783 179 6 13 chr4 89971298 89971611 -94317051 - AluJb SINE Alu 0 312 2 8365 197 58 64 chr4 89971611 89972465 -94316197 - L1MEc LINE L1 -3620 3945 2999 2672 259 113 18 chr4 89972532 89973479 -94315183 - L1MEc LINE L1 -5321 2425 1389 44004 36 4 2 chr4 89973574 89979717 -94308945 + L1PA3 LINE L1 1 6152 -3 1165 220 51 104 chr4 89981131 89981438 -94307224 - MLT1C LTR MaLR -2 465 191 1951 136 3 11 chr4 89981438 89981757 -94306905 - AluSx SINE Alu 0 317 1 1165 220 51 104 chr4 89981757 89981939 -94306723 - MLT1C LTR MaLR -276 191 1 216 0 0 0 chr4 89983124 89983148 -94305514 + (TTG)n Simple_repeat Simple_repeat 2 25 0 374 300 82 54 chr4 89983400 89983648 -94305014 + L1MC/D LINE L1 5484 5743 -432 1580 216 43 43 chr4 89983648 89984115 -94304547 + MLT1C LTR MaLR 1 467 0 374 300 82 54 chr4 89984115 89984165 -94304497 + L1MC/D LINE L1 5743 5790 -385 237 277 12 12 chr4 89984258 89984341 -94304321 + (TA)n Simple_repeat Simple_repeat 1 83 0 264 149 0 0 chr4 89984349 89984396 -94304266 + (CA)n Simple_repeat Simple_repeat 2 48 0 1902 142 3 35 chr4 89984500 89984811 -94303851 + AluSx SINE Alu 1 301 -11 1900 236 55 2 chr4 89984900 89985353 -94303309 + L1MC3 LINE L1 6291 6767 -1018 1228 214 4 11 chr4 89985347 89985623 -94303039 - L1M4 LINE L1 -1231 4915 4642 * 244 182 0 0 chr4 89985623 89985678 -94302984 + L1MC3 LINE L1 7730 7784 -1 38 39 0 0 chr4 89985678 89985730 -94302932 + AT_rich Low_complexity Low_complexity 1 52 0 680 295 58 15 chr4 89985749 89986136 -94302526 - L1MC4a LINE L1 -303 5818 5420 2477 84 0 3 chr4 89986731 89987040 -94301622 + AluSx SINE Alu 1 308 -4 26 82 0 0 chr4 89987042 89987103 -94301559 + AT_rich Low_complexity Low_complexity 1 61 0 581 241 21 55 chr4 89987210 89987446 -94301216 + L1MC4 LINE L1 7447 7674 -368 585 188 23 17 chr4 89987446 89987622 -94301040 + GA-rich Low_complexity Low_complexity 4 180 0 569 286 20 5 chr4 89987629 89987828 -94300834 + L1MC4 LINE L1 7692 7893 -149 211 132 26 0 chr4 89989655 89989693 -94298969 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 22 80 0 0 chr4 89990734 89990784 -94297878 + AT_rich Low_complexity Low_complexity 1 50 0 198 0 0 0 chr4 89992464 89992486 -94296176 + (T)n Simple_repeat Simple_repeat 1 22 0 386 294 72 83 chr4 89993042 89993307 -94295355 - MIR SINE MIR 0 262 1 262 274 39 49 chr4 89993443 89993545 -94295117 + MIR3 SINE MIR 73 173 -35 480 269 77 116 chr4 89993545 89994080 -94294582 - MLT1H LTR MaLR 0 549 39 1427 218 11 46 chr4 89994263 89994635 -94294027 - MLT1A1 LTR MaLR -6 359 1 436 271 59 62 chr4 89995233 89995357 -94293305 - Charlie8 DNA MER1_type -68 273 150 2276 98 7 0 chr4 89995357 89995662 -94293000 + AluSp SINE Alu 1 307 -6 436 271 59 62 chr4 89995662 89995810 -94292852 - Charlie8 DNA MER1_type -191 150 2 1044 243 39 3 chr4 89995913 89996197 -94292465 - MLT1E3 LTR MaLR 0 624 331 1124 178 0 27 chr4 89996198 89996423 -94292239 - AluSg SINE Alu -47 263 45 1835 113 4 8 chr4 89996523 89996770 -94291892 + AluSc SINE Alu 4 249 -60 30 0 0 0 chr4 89998264 89998294 -94290368 + AT_rich Low_complexity Low_complexity 1 30 0 1382 70 0 0 chr4 89998449 89998620 -94290042 - AluSg SINE Alu -11 298 128 616 27 0 0 chr4 89998623 89998698 -94289964 - AluSg SINE Alu -243 75 1 22 0 0 0 chr4 90000401 90000423 -94288239 + AT_rich Low_complexity Low_complexity 1 22 0 2398 99 0 0 chr4 90002558 90002860 -94285802 + AluSx SINE Alu 1 302 -10 363 337 79 6 chr4 90003153 90003331 -94285331 + L1ME LINE L1 5594 5784 -337 2238 118 0 6 chr4 90003659 90003972 -94284690 + AluSx SINE Alu 1 311 -1 217 274 32 0 chr4 90004095 90004157 -94284505 + GA-rich Low_complexity Low_complexity 2 65 0 607 151 141 18 chr4 90004304 90004420 -94284242 + MER39 LTR ERV1 2 102 -605 198 0 0 0 chr4 90004420 90004442 -94284220 + (GAAAA)n Simple_repeat Simple_repeat 3 24 0 607 151 141 18 chr4 90004442 90004509 -94284153 + MER39 LTR ERV1 102 374 -333 327 114 136 125 chr4 90004509 90004597 -94284065 - AluJb SINE Alu -7 295 207 * 2047 138 3 11 chr4 90004593 90004941 -94283721 + MER39 LTR ERV1 363 707 0 2655 180 23 36 chr4 90005024 90005580 -94283082 - MER44D DNA MER2_type -1 604 1 799 253 44 40 chr4 90005601 90005850 -94282812 - MIR SINE MIR 0 262 13 1555 139 20 0 chr4 90005911 90006163 -94282499 + MER7C DNA MER2_type 1 257 -345 1937 125 52 86 chr4 90006163 90006344 -94282318 + MSTA LTR MaLR 1 187 -241 1662 179 7 16 chr4 90006344 90006651 -94282011 + AluJo SINE Alu 6 309 -3 1937 125 52 86 chr4 90006651 90006876 -94281786 + MSTA LTR MaLR 187 393 -35 1695 187 0 0 chr4 90006982 90007260 -94281402 - AluJb SINE Alu -34 278 1 293 296 117 0 chr4 90007262 90007441 -94281221 + L1MC/D LINE L1 5554 5753 -2055 3595 103 12 25 chr4 90007497 90008058 -94280604 + MER41A LTR ERV1 1 554 0 295 238 0 0 chr4 90008328 90008391 -94280271 - MIR SINE MIR -187 75 13 2266 74 10 3 chr4 90009421 90009718 -94278944 - AluY SINE Alu -12 299 1 3748 33 0 2 chr4 90010264 90010713 -94277949 - LTR7 LTR ERV1 -2 448 1 2264 99 3 3 chr4 90011116 90011418 -94277244 - AluSq SINE Alu -11 302 1 399 327 56 25 chr4 90011699 90011861 -94276801 - MIR SINE MIR -75 187 21 21 0 0 0 chr4 90012074 90012095 -94276567 + AT_rich Low_complexity Low_complexity 1 21 0 2296 44 41 17 chr4 90012178 90012473 -94276189 + AluY SINE Alu 1 302 -9 196 402 0 0 chr4 90012619 90012701 -94275961 + MER5B DNA MER1_type 1 82 -96 217 237 13 53 chr4 90012790 90012866 -94275796 + MIR SINE MIR 180 252 -10 739 134 9 5 chr4 90012958 90013082 -94275580 + MSTA LTR MaLR 1 128 -227 3337 143 175 43 chr4 90013082 90014435 -94274227 + pTR5 LTR ERV1 744 2606 0 1143 167 29 87 chr4 90014444 90014720 -94273942 + MSTA LTR MaLR 150 409 -19 1802 98 0 4 chr4 90015370 90015604 -94273058 + AluSq SINE Alu 68 300 -13 22 99 0 0 chr4 90015771 90015842 -94272820 + AT_rich Low_complexity Low_complexity 1 71 0 865 133 26 72 chr4 90016106 90016301 -94272361 + MSTB2 LTR MaLR 264 449 -8 1949 126 0 44 chr4 90016470 90016788 -94271874 + AluSc SINE Alu 1 304 -5 245 244 0 12 chr4 90016947 90017029 -94271633 + GA-rich Low_complexity Low_complexity 4 84 0 1249 213 34 74 chr4 90017056 90017436 -94271226 + MLT1A1 LTR MaLR 1 365 0 311 369 36 0 chr4 90017484 90017595 -94271067 - L2 LINE L2 0 3272 3158 2259 97 3 10 chr4 90017916 90018214 -94270448 + AluSx SINE Alu 1 296 -16 21 0 0 0 chr4 90018506 90018527 -94270135 + AT_rich Low_complexity Low_complexity 1 21 0 1830 149 7 4 chr4 90020062 90020338 -94268324 + AluSx SINE Alu 5 281 -31 227 239 60 0 chr4 90020379 90020446 -94268216 - MER92C LTR ERV1 0 554 484 1784 126 7 11 chr4 90020559 90020830 -94267832 - AluSx SINE Alu -8 304 35 444 214 27 36 chr4 90020860 90020972 -94267690 - MER92C LTR ERV1 -443 111 1 483 233 0 33 chr4 90021617 90021737 -94266925 - MER31-int LTR ERV1 -462 4474 4359 639 202 117 42 chr4 90021789 90022002 -94266660 - LTR37A LTR ERV1 -197 229 1 2004 134 7 20 chr4 90022042 90022341 -94266321 - AluSx SINE Alu -17 295 1 879 178 0 0 chr4 90022350 90022485 -94266177 - FLAM_A SINE Alu 0 142 8 1568 186 29 0 chr4 90022510 90022789 -94265873 - AluJb SINE Alu 0 312 26 2796 222 15 70 chr4 90022791 90023722 -94264940 - MER31-int LTR ERV1 -727 4209 3330 473 195 8 41 chr4 90023798 90023921 -94264741 - MER31-int LTR ERV1 -1648 3288 3170 266 209 0 105 chr4 90024408 90024494 -94264168 - MER31-int LTR ERV1 -1870 3066 2990 235 238 69 89 chr4 90024571 90024672 -94263990 - L2 LINE L2 -35 3237 3139 1990 131 44 0 chr4 90024971 90025268 -94263394 + AluSx SINE Alu 1 310 -2 2319 112 0 0 chr4 90025948 90026252 -94262410 - AluSx SINE Alu -8 304 1 2025 151 54 24 chr4 90026393 90026818 -94261844 + L1MB7 LINE L1 5747 6184 0 3128 37 0 0 chr4 90027269 90027668 -94260994 + L1PA4 LINE L1 5764 6162 0 375 354 146 24 chr4 90027792 90028168 -94260494 - L2 LINE L2 0 3272 2851 231 333 54 0 chr4 90028573 90028702 -94259960 + L1ME1 LINE L1 5766 5901 -1907 190 71 24 48 chr4 90028734 90028776 -94259886 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 361 148 25 0 chr4 90028842 90028923 -94259739 + (TA)n Simple_repeat Simple_repeat 2 84 0 747 214 0 19 chr4 90028924 90029078 -94259584 - AluSg/x SINE Alu -27 285 135 2158 115 0 3 chr4 90029078 90029382 -94259280 - AluSx SINE Alu -3 309 7 397 264 62 6 chr4 90029537 90029710 -94258952 - LTR16A LTR ERVL 0 450 166 500 33 0 0 chr4 90029879 90029940 -94258722 - AluY SINE Alu -15 294 234 826 247 9 27 chr4 90030092 90030315 -94258347 + MLT1F LTR MaLR 1 219 -323 766 243 68 15 chr4 90030365 90030571 -94258091 + MLT1F LTR MaLR 351 567 0 25 51 0 0 chr4 90030855 90030894 -94257768 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr4 90031806 90031831 -94256831 + AT_rich Low_complexity Low_complexity 1 25 0 1607 105 14 0 chr4 90031859 90032069 -94256593 - AluSq SINE Alu -100 213 1 226 314 154 45 chr4 90032828 90033140 -94255522 - L2 LINE L2 -99 3173 2828 21 0 0 0 chr4 90033253 90033274 -94255388 + AT_rich Low_complexity Low_complexity 1 21 0 341 319 72 75 chr4 90033493 90033800 -94254862 + L2 LINE L2 2937 3242 -30 622 221 100 0 chr4 90033811 90033951 -94254711 + FAM SINE Alu 4 157 -18 499 215 8 126 chr4 90033958 90034204 -94254458 + L1ME1 LINE L1 5945 6161 -5 1883 172 0 3 chr4 90034665 90034967 -94253695 + AluSx SINE Alu 3 303 -9 346 282 0 7 chr4 90035265 90035407 -94253255 - L1MC4 LINE L1 -225 7817 7677 244 305 38 67 chr4 90035572 90035677 -94252985 + MIR SINE MIR 49 150 -58 215 204 74 0 chr4 90035991 90036045 -94252617 - MIR SINE MIR -111 151 94 2024 113 0 28 chr4 90036137 90036419 -94252243 + AluSx SINE Alu 1 274 -38 381 283 74 77 chr4 90036552 90036849 -94251813 + L2 LINE L2 2338 2633 -681 344 271 60 60 chr4 90036899 90037032 -94251630 - L1MC4 LINE L1 -30 8012 7880 1937 142 3 14 chr4 90037074 90037369 -94251293 - AluSx SINE Alu -20 292 1 759 284 60 80 chr4 90037371 90037770 -94250892 - L1MC4 LINE L1 -149 7893 7487 1832 167 0 7 chr4 90037770 90038069 -94250593 - AluJo SINE Alu -15 297 1 759 284 60 80 chr4 90038069 90038201 -94250461 - L1MC4 LINE L1 -555 7487 7354 2169 155 8 32 chr4 90038201 90038422 -94250240 - MLT1B LTR MaLR 0 390 182 2207 124 0 0 chr4 90038422 90038713 -94249949 - AluSx SINE Alu -21 291 1 2169 155 8 32 chr4 90038713 90038891 -94249771 - MLT1B LTR MaLR -208 182 1 759 284 60 80 chr4 90038891 90039182 -94249480 - L1MC4 LINE L1 -688 7354 7087 234 0 0 0 chr4 90039294 90039320 -94249342 + (TTG)n Simple_repeat Simple_repeat 2 27 0 183 80 0 0 chr4 90039344 90039369 -94249293 + (TCC)n Simple_repeat Simple_repeat 3 27 0 354 306 49 27 chr4 90040085 90040268 -94248394 + L2 LINE L2 3127 3313 0 1028 99 39 11 chr4 90040376 90040558 -94248104 - L1MA8 LINE L1 -4 6287 6101 488 241 198 11 chr4 90040647 90040834 -94247828 - MIR SINE MIR 0 262 41 1898 145 10 17 chr4 90041556 90041853 -94246809 + AluSx SINE Alu 5 299 -13 2278 92 0 10 chr4 90042041 90042334 -94246328 + AluSg SINE Alu 1 290 -20 21 0 0 0 chr4 90042411 90042432 -94246230 + AT_rich Low_complexity Low_complexity 1 21 0 1719 179 23 3 chr4 90043286 90043588 -94245074 + AluJo SINE Alu 5 312 0 526 197 86 8 chr4 90044078 90044195 -94244467 - MLT1H1 LTR MaLR 0 555 430 1457 259 31 60 chr4 90044199 90044989 -94243673 - L1MC5 LINE L1 -803 7158 6411 318 263 42 34 chr4 90045236 90045354 -94243308 - HAL1b LINE L1 -747 601 483 281 298 61 53 chr4 90045363 90045608 -94243054 - HAL1b LINE L1 -977 371 125 21 82 0 0 chr4 90045610 90045659 -94243003 + AT_rich Low_complexity Low_complexity 1 49 0 284 154 19 0 chr4 90045925 90045977 -94242685 - L2 LINE L2 0 3313 3261 293 246 82 27 chr4 90045984 90046094 -94242568 + MLT1H LTR MaLR 434 549 0 1085 133 24 0 chr4 90046691 90046856 -94241806 - AluSc SINE Alu -11 298 130 587 257 46 7 chr4 90046876 90047028 -94241634 + MLT1C LTR MaLR 310 467 0 878 353 68 0 chr4 90047117 90047412 -94241250 + MER115 DNA AcHobo 6 320 -373 709 170 33 0 chr4 90047454 90047607 -94241055 + MER53 DNA DNA 12 169 -20 431 141 169 42 chr4 90047819 90047961 -94240701 + MER115 DNA AcHobo 507 666 -27 1378 156 5 0 chr4 90048239 90048451 -94240211 + AluJb SINE Alu 84 296 -16 748 171 0 0 chr4 90048452 90048569 -94240093 - AluJo/FLAM SINE Alu -185 117 1 1455 134 5 0 chr4 90048939 90049148 -94239514 - AluJb SINE Alu -16 296 87 370 146 0 0 chr4 90049148 90049203 -94239459 - AluJb SINE Alu -247 55 1 2295 56 35 0 chr4 90049215 90049500 -94239162 - AluY SINE Alu -16 295 1 3914 96 38 47 chr4 90049546 90050035 -94238627 + L1MA3 LINE L1 5645 6128 -177 2142 103 0 7 chr4 90050035 90050327 -94238335 - AluSg SINE Alu -20 290 1 3914 96 38 47 chr4 90050327 90050504 -94238158 + L1MA3 LINE L1 6128 6305 0 32 0 0 0 chr4 90050504 90050536 -94238126 + AT_rich Low_complexity Low_complexity 1 32 0 182 231 77 0 chr4 90050670 90050722 -94237940 + MIR SINE MIR 165 220 -42 22 35 0 0 chr4 90051104 90051133 -94237529 + AT_rich Low_complexity Low_complexity 1 29 0 1491 161 16 99 chr4 90052681 90053004 -94235658 - AluJb SINE Alu -16 296 1 217 299 11 46 chr4 90053062 90053149 -94235513 - L3 LINE CR1 -264 1313 1230 194 263 42 63 chr4 90053207 90053302 -94235360 + L2 LINE L2 1356 1448 -1866 296 374 55 32 chr4 90053546 90053926 -94234736 + L2 LINE L2 1853 2241 -1073 923 210 35 15 chr4 90053932 90054132 -94234530 + MER20 DNA MER1_type 16 219 0 457 240 48 53 chr4 90054132 90054340 -94234322 + L1MC4a LINE L1 5734 5940 -1868 346 259 132 23 chr4 90054392 90054566 -94234096 + L1MC4a LINE L1 6059 6251 -1557 548 259 92 6 chr4 90055058 90055232 -94233430 + MIR SINE MIR 74 262 0 444 195 0 0 chr4 90055331 90055418 -94233244 + AluJ/FRAM SINE Alu 226 312 0 316 282 16 48 chr4 90055620 90055744 -94232918 - L2 LINE L2 0 3313 3194 11536 102 24 8 chr4 90055918 90057691 -94230971 - HERVH LTR ERV1 -5208 2505 520 254 271 185 26 chr4 90058288 90058439 -94230223 - MIR SINE MIR -59 203 29 368 330 94 24 chr4 90059017 90059229 -94229433 + MIR SINE MIR 28 254 -8 3452 106 27 14 chr4 90059385 90059943 -94228719 + HERVH LTR ERV1 2423 2987 -4726 912 135 20 0 chr4 90059937 90060085 -94228577 + HERVH LTR ERV1 3140 3290 -4423 * 3240 120 6 2 chr4 90060075 90060575 -94228087 + HERVH LTR ERV1 3492 3993 -3720 1829 166 6 6 chr4 90060566 90060880 -94227782 + HERVH LTR ERV1 4478 4791 -2922 * 1793 190 8 32 chr4 90062740 90062961 -94225701 - MLT1B LTR MaLR 0 390 182 1606 192 0 3 chr4 90062961 90063253 -94225409 - AluSx SINE Alu -21 291 1 1793 190 8 32 chr4 90063253 90063431 -94225231 - MLT1B LTR MaLR -208 182 1 587 262 79 28 chr4 90063470 90063722 -94224940 - L1MC4 LINE L1 -691 7351 7087 234 0 0 0 chr4 90063834 90063860 -94224802 + (TTG)n Simple_repeat Simple_repeat 2 27 0 183 80 0 0 chr4 90063884 90063909 -94224753 + (TCC)n Simple_repeat Simple_repeat 3 27 0 344 308 95 40 chr4 90064901 90065154 -94223508 - HAL1 LINE L1 -1807 700 434 345 242 100 132 chr4 90065237 90065518 -94223144 - HAL1 LINE L1 -2214 293 22 1621 113 0 8 chr4 90065698 90065936 -94222726 - AluY SINE Alu -34 277 42 1270 200 108 98 chr4 90066275 90066416 -94222246 + L1ME3 LINE L1 5601 5739 -423 1713 177 10 3 chr4 90066416 90066726 -94221936 + AluJb SINE Alu 1 312 0 1270 200 108 98 chr4 90066726 90067138 -94221524 + L1ME3 LINE L1 5739 6160 -2 1415 203 53 37 chr4 90067199 90067579 -94221083 + MLT1B LTR MaLR 1 386 -4 223 301 135 37 chr4 90067627 90067790 -94220872 - MIR SINE MIR -54 208 30 311 237 95 84 chr4 90068315 90068505 -94220157 + L1ME4a LINE L1 5930 6121 0 1677 138 14 0 chr4 90068872 90069148 -94219514 + HERVH LTR ERV1 3714 3993 -3720 * 4027 162 9 6 chr4 90069144 90069812 -94218850 + HERVH LTR ERV1 4480 5149 -2564 2490 97 47 29 chr4 90069809 90070402 -94218260 + HERVH LTR ERV1 5597 7713 0 * 1315 168 88 61 chr4 90070402 90070778 -94217884 + LTR7 LTR ERV1 1 386 -64 360 0 0 0 chr4 90070796 90070836 -94217826 + (CA)n Simple_repeat Simple_repeat 1 40 0 2118 171 46 9 chr4 90070836 90071269 -94217393 + L1MC/D LINE L1 5273 5721 -612 1889 91 16 0 chr4 90071410 90071664 -94216998 + AluSq SINE Alu 1 258 -55 2136 67 52 6 chr4 90071771 90072100 -94216562 + HERVH LTR ERV1 7370 7713 0 1567 149 88 59 chr4 90072100 90072475 -94216187 + LTR7 LTR ERV1 1 386 -64 360 0 0 0 chr4 90072493 90072533 -94216129 + (CA)n Simple_repeat Simple_repeat 1 40 0 2214 162 46 7 chr4 90072533 90072965 -94215697 + L1MC/D LINE L1 5273 5721 -612 2030 93 22 0 chr4 90073106 90073407 -94215255 + AluSx SINE Alu 1 307 0 186 43 0 0 chr4 90074591 90074614 -94214048 + (CAA)n Simple_repeat Simple_repeat 2 24 0 23 68 0 0 chr4 90074972 90075016 -94213646 + AT_rich Low_complexity Low_complexity 1 44 0 24 32 0 0 chr4 90076345 90076376 -94212286 + AT_rich Low_complexity Low_complexity 1 31 0 1779 89 4 4 chr4 90078038 90078275 -94210387 + AluY SINE Alu 41 277 -34 344 259 113 101 chr4 90078455 90078702 -94209960 + HAL1 LINE L1 22 271 -2236 284 319 94 43 chr4 90078819 90079073 -94209589 + HAL1 LINE L1 434 700 -1807 1906 79 0 24 chr4 90080513 90080765 -94207897 - AluY SINE Alu -65 246 1 2262 74 0 3 chr4 90080977 90081261 -94207401 - AluY SINE Alu -28 283 1 23 0 0 0 chr4 90082440 90082463 -94206199 + AT_rich Low_complexity Low_complexity 1 23 0 545 186 72 64 chr4 90082586 90082822 -94205840 + L1MC5 LINE L1 7701 7938 -23 2236 128 0 0 chr4 90082837 90083149 -94205513 + AluSq SINE Alu 1 312 -1 772 230 112 0 chr4 90083286 90083482 -94205180 - MER58A DNA MER1_type -1 223 6 1498 165 71 0 chr4 90083568 90083835 -94204827 + AluJb SINE Alu 7 292 -20 2391 79 0 3 chr4 90085418 90085723 -94202939 + AluY SINE Alu 1 304 -7 1931 121 38 0 chr4 90086898 90087187 -94201475 + AluSx SINE Alu 1 300 -12 21 0 0 0 chr4 90087187 90087208 -94201454 + AT_rich Low_complexity Low_complexity 1 21 0 1203 206 107 96 chr4 90088350 90088491 -94200171 + L1ME3 LINE L1 5601 5739 -423 1484 210 10 3 chr4 90088491 90088801 -94199861 + AluJb SINE Alu 1 312 0 1203 206 107 96 chr4 90088801 90089213 -94199449 + L1ME3 LINE L1 5739 6160 -2 645 200 77 94 chr4 90089891 90090126 -94198536 - MIR SINE MIR -20 242 12 23 0 0 0 chr4 90090494 90090517 -94198145 + AT_rich Low_complexity Low_complexity 1 23 0 531 321 116 19 chr4 90091185 90091496 -94197166 + L3 LINE CR1 741 1081 -496 22 70 0 0 chr4 90091767 90091810 -94196852 + AT_rich Low_complexity Low_complexity 1 43 0 307 256 38 23 chr4 90092908 90093041 -94195621 - L1ME LINE L1 -299 5822 5688 39632 57 1 4 chr4 90094889 90100230 -94188432 - L1P LINE L1 -821 5325 1 394 188 94 10 chr4 90100228 90100324 -94188338 - L1MC/D LINE L1 -2029 5779 5676 * 293 214 116 27 chr4 90100533 90100645 -94188017 + L1MB8 LINE L1 6055 6176 -2 231 301 186 6 chr4 90102037 90102193 -94186469 - MIR SINE MIR -6 256 73 216 97 0 0 chr4 90102302 90102333 -94186329 + (T)n Simple_repeat Simple_repeat 1 31 0 406 320 278 10 chr4 90102673 90103298 -94185364 - L2 LINE L2 -557 2757 1965 1727 166 14 3 chr4 90103314 90103610 -94185052 + AluJo SINE Alu 1 299 -13 23 0 0 0 chr4 90104326 90104349 -94184313 + AT_rich Low_complexity Low_complexity 1 23 0 1010 205 137 92 chr4 90104434 90104594 -94184068 + L1MC5 LINE L1 7008 7159 -802 1772 134 37 8 chr4 90104594 90104886 -94183776 + AluSx SINE Alu 7 306 0 1010 205 137 92 chr4 90104886 90105499 -94183163 + L1MC5 LINE L1 7159 7817 -144 324 220 170 38 chr4 90105870 90106029 -94182633 - MLT1J LTR MaLR -12 499 320 399 197 137 43 chr4 90106068 90106185 -94182477 - MLT1J LTR MaLR -306 205 78 211 281 234 8 chr4 90106428 90106556 -94182106 - MIR SINE MIR -72 190 34 1132 271 119 45 chr4 90106578 90106796 -94181866 + HAL1 LINE L1 1701 1902 -605 1916 135 7 0 chr4 90106796 90107077 -94181585 + AluSx SINE Alu 25 307 -5 1132 271 119 45 chr4 90107077 90107607 -94181055 + HAL1 LINE L1 1902 2504 -3 2023 132 0 10 chr4 90108566 90108880 -94179782 + AluSq SINE Alu 3 313 0 21 36 0 0 chr4 90109391 90109419 -94179243 + AT_rich Low_complexity Low_complexity 1 28 0 211 174 0 43 chr4 90110903 90110949 -94177713 + GA-rich Low_complexity Low_complexity 2 45 0 22 35 0 0 chr4 90111114 90111143 -94177519 + AT_rich Low_complexity Low_complexity 1 29 0 2342 99 0 0 chr4 90113079 90113383 -94175279 + AluSg SINE Alu 1 304 -6 1261 222 140 41 chr4 90113651 90114188 -94174474 - HsTC2 DNA Tc2 -41 1857 1268 2294 102 0 3 chr4 90115624 90115928 -94172734 + AluSg SINE Alu 2 304 -6 1264 229 106 43 chr4 90115992 90116503 -94172159 - HsTC2 DNA Tc2 -15 1883 1341 502 166 33 84 chr4 90119441 90119584 -94169078 + L1MB5 LINE L1 5742 5890 -288 1864 173 14 8 chr4 90119584 90119936 -94168726 + L1PA16 LINE L1 5812 6165 -1 502 166 33 84 chr4 90119936 90119952 -94168710 + L1MB5 LINE L1 5890 5905 -273 1541 184 14 0 chr4 90119971 90120254 -94168408 + L1MB5 LINE L1 5880 6166 -8 1881 302 117 31 chr4 90120467 90121357 -94167305 + ERVL LTR ERVL 2110 3108 -2656 2235 112 0 3 chr4 90121357 90121662 -94167000 + AluSg SINE Alu 1 304 -6 1881 302 117 31 chr4 90121662 90121836 -94166826 + ERVL LTR ERVL 3108 3266 -2498 21 0 0 0 chr4 90123597 90123618 -94165044 + AT_rich Low_complexity Low_complexity 1 21 0 1625 299 92 69 chr4 90124810 90125132 -94163530 + ERVL LTR ERVL 3329 3642 -2122 1602 141 126 0 chr4 90125132 90125401 -94163261 + AluSx SINE Alu 1 303 -9 1625 299 92 69 chr4 90125401 90125455 -94163207 + ERVL LTR ERVL 3642 3693 -2071 1581 174 7 44 chr4 90125455 90125749 -94162913 - AluJo SINE Alu -29 283 1 1625 299 92 69 chr4 90125749 90126026 -94162636 + ERVL LTR ERVL 3693 3962 -1802 2017 122 6 34 chr4 90126026 90126346 -94162316 + AluSx SINE Alu 1 311 -1 1625 299 92 69 chr4 90126346 90126795 -94161867 + ERVL LTR ERVL 3962 4459 -1305 1084 149 86 18 chr4 90126795 90127017 -94161645 + MLT1C LTR MaLR 1 237 -230 481 268 52 20 chr4 90127842 90127995 -94160667 - MIR SINE MIR -6 256 99 1991 149 3 7 chr4 90128499 90128808 -94159854 + AluJb SINE Alu 1 308 -4 343 258 16 48 chr4 90129402 90129526 -94159136 + L2 LINE L2 3194 3313 0 412 121 0 0 chr4 90129727 90129815 -94158847 - AluJ/FRAM SINE Alu 0 313 226 589 253 92 6 chr4 90129914 90130088 -94158574 - MIR SINE MIR 0 262 74 180 0 0 0 chr4 90133422 90133442 -94155220 + (A)n Simple_repeat Simple_repeat 1 20 0 258 257 50 69 chr4 90133612 90133713 -94154949 + MER102b DNA MER1_type 11 109 -232 852 203 164 49 chr4 90133722 90134008 -94154654 + L1MB8 LINE L1 5834 6152 -26 505 302 79 26 chr4 90134037 90134226 -94154436 + MER102b DNA MER1_type 125 323 -18 234 307 10 0 chr4 90134292 90134371 -94154291 - MIR SINE MIR -73 135 55 334 239 47 0 chr4 90134529 90134633 -94154029 - MER20B DNA MER1_type -35 184 74 193 292 174 42 chr4 90134899 90135043 -94153619 + MIR3 SINE MIR 25 187 -21 1560 156 3 98 chr4 90136088 90136415 -94152247 - AluJb SINE Alu -16 296 1 222 264 23 58 chr4 90136473 90136560 -94152102 - L3 LINE CR1 -264 1313 1230 232 277 32 43 chr4 90136618 90136712 -94151950 + L2 LINE L2 1356 1448 -1866 2077 142 0 3 chr4 90136923 90137233 -94151429 + AluSx SINE Alu 1 309 -3 191 274 42 74 chr4 90137862 90137957 -94150705 - L2 LINE L2 -35 3278 3187 417 355 58 35 chr4 90138009 90138355 -94150307 + L2 LINE L2 1853 2206 -1108 993 183 31 54 chr4 90138368 90138592 -94150070 + MER20 DNA MER1_type 1 219 0 2557 232 161 80 chr4 90138592 90140283 -94148379 + L1MC4a LINE L1 5734 7562 -246 276 242 42 32 chr4 90140309 90140404 -94148258 + MER5C DNA MER1_type 2 97 -227 502 191 7 59 chr4 90140541 90140693 -94147969 + L1MC4 LINE L1 7688 7831 -211 2285 262 103 59 chr4 90140974 90142082 -94146580 + L2 LINE L2 1937 3098 -215 816 167 0 0 chr4 90142082 90142214 -94146448 + FLAM_C SINE Alu 2 133 0 2285 262 103 59 chr4 90142214 90142431 -94146231 + L2 LINE L2 3098 3304 -9 222 37 0 0 chr4 90142668 90142695 -94145967 + (A)n Simple_repeat Simple_repeat 1 27 0 484 289 60 0 chr4 90143318 90143467 -94145195 + MIR SINE MIR 104 261 -1 617 149 75 37 chr4 90143479 90143613 -94145049 + MLT1B LTR MaLR 4 142 -248 1264 189 72 26 chr4 90143615 90143922 -94144740 + MLT1B LTR MaLR 68 388 -2 281 279 136 0 chr4 90144208 90144355 -94144307 - MIR SINE MIR -55 207 41 808 147 85 2 chr4 90144452 90144745 -94143917 + MER46B DNA MER2_type 1 236 0 2249 111 0 0 chr4 90145014 90145311 -94143351 - AluSg SINE Alu -13 297 1 226 186 0 0 chr4 90145336 90145379 -94143283 + tRNA-Cys-TGC tRNA tRNA 1 43 -32 2197 111 0 3 chr4 90145537 90145843 -94142819 - AluSx SINE Alu -7 305 1 388 207 183 18 chr4 90146124 90146271 -94142391 - Charlie1a DNA MER1_type -24 1431 1258 529 282 71 88 chr4 90146271 90146793 -94141869 + MER34 LTR ERV1 1 513 -29 4902 195 111 11 chr4 90146831 90147974 -94140688 - Charlie1a DNA MER1_type -197 1258 1 2156 140 0 0 chr4 90147976 90148283 -94140379 + AluSx SINE Alu 1 307 -5 2194 115 0 0 chr4 90149412 90149698 -94138964 + AluSx SINE Alu 1 286 -26 1737 132 3 35 chr4 90149955 90150242 -94138420 + AluSx SINE Alu 25 302 -10 537 232 67 71 chr4 90150512 90150766 -94137896 + MER112 DNA MER1_type 1 253 -3 363 272 31 113 chr4 90150817 90151074 -94137588 + L1M4 LINE L1 2676 2911 -3235 4005 156 57 10 chr4 90151355 90152071 -94136591 + L1MB2 LINE L1 5415 6164 -7 1511 173 85 51 chr4 90152217 90152570 -94136092 + MLT1A1 LTR MaLR 1 365 0 1870 170 0 7 chr4 90152898 90153187 -94135475 - AluJo SINE Alu -25 287 1 213 284 30 30 chr4 90153508 90153575 -94135087 - MIR SINE MIR -77 131 65 2213 91 13 19 chr4 90153958 90154266 -94134396 + AluY SINE Alu 1 306 -5 217 324 89 65 chr4 90154321 90154692 -94133970 + L2 LINE L2 1804 2183 -1131 201 330 34 11 chr4 90154739 90154827 -94133835 + L2 LINE L2 2384 2473 -841 2253 121 0 0 chr4 90155743 90156041 -94132621 + AluSx SINE Alu 6 303 -9 1862 163 6 13 chr4 90156050 90156363 -94132299 + AluSx SINE Alu 1 311 -1 958 288 75 59 chr4 90156417 90156872 -94131790 - L2 LINE L2 -19 3294 2833 2286 113 3 0 chr4 90157224 90157534 -94131128 - AluSp SINE Alu -2 311 1 2089 103 35 0 chr4 90157574 90157864 -94130798 - AluSx SINE Alu -6 306 7 215 271 0 55 chr4 90158482 90158573 -94130089 - MIR3 SINE MIR -48 160 74 334 294 189 0 chr4 90159119 90159299 -94129363 + MIR SINE MIR 31 244 -18 32 0 0 0 chr4 90161395 90161427 -94127235 + AT_rich Low_complexity Low_complexity 1 32 0 1220 78 67 6 chr4 90161427 90161606 -94127056 - L1MA3 LINE L1 0 6305 6116 425 176 0 0 chr4 90161606 90161674 -94126988 + AluS SINE Alu 2 69 -241 1611 70 20 0 chr4 90161776 90161976 -94126686 - AluSx SINE Alu -108 204 1 553 125 0 57 chr4 90162879 90162967 -94125695 - FLAM_A SINE Alu -12 130 48 5613 67 0 0 chr4 90162970 90163640 -94125022 + L1PA8 LINE L1 5503 6172 0 393 351 97 21 chr4 90163687 90163843 -94124819 + L2 LINE L2 2670 2813 -459 2084 123 0 22 chr4 90163843 90164159 -94124503 - AluSx SINE Alu -3 309 1 393 351 97 21 chr4 90164159 90164384 -94124278 + L2 LINE L2 2813 3078 -194 184 328 17 17 chr4 90165521 90165579 -94123083 + MIR SINE MIR 21 78 -184 4689 131 13 8 chr4 90165628 90166332 -94122330 - HERVL-B3 LTR ERVL -237 5417 4711 1276 233 49 32 chr4 90166332 90166638 -94122024 + MLT2B3 LTR ERVL 1 278 -276 5598 66 32 40 chr4 90166638 90167889 -94120773 - SVA Other Other -518 1040 11 1276 233 49 32 chr4 90167889 90168124 -94120538 + MLT2B3 LTR ERVL 278 508 -46 12947 121 33 2 chr4 90168129 90169972 -94118690 - HERVL-B3 LTR ERVL -1040 4724 2825 2432 69 0 16 chr4 90169978 90170281 -94118381 - AluY SINE Alu -13 298 1 15811 135 15 19 chr4 90170281 90171707 -94116955 - HERVL-B3 LTR ERVL -3096 2558 1147 1902 149 3 13 chr4 90171707 90172009 -94116653 + AluSx SINE Alu 1 299 -13 15811 135 15 19 chr4 90172009 90173039 -94115623 - HERVL-B3 LTR ERVL -4507 1147 114 6540 88 1 1 chr4 90173039 90173917 -94114745 - L1PA8 LINE L1 -1635 4511 3634 4634 108 1 77 chr4 90173913 90174719 -94113943 + L1PA8 LINE L1 4508 5252 -894 * 7049 91 7 0 chr4 90174720 90175632 -94113030 + L1PA8 LINE L1 5254 6171 -1 785 142 0 8 chr4 90175634 90175761 -94112901 - HERVL-B3 LTR ERVL -5528 126 1 2042 213 42 87 chr4 90175765 90176339 -94112323 - MLT2B3 LTR ERVL -4 550 3 399 248 28 28 chr4 90176339 90176480 -94112182 - L1M4 LINE L1 -769 5377 5237 30548 96 5 17 chr4 90176497 90180838 -94107824 + L1P LINE L1 11 4299 -1847 4435 247 44 60 chr4 90180838 90183044 -94105618 - L1PBb LINE L1 -2582 4626 2387 1605 150 88 0 chr4 90183044 90183317 -94105345 - AluSg SINE Alu -13 297 1 4435 247 44 60 chr4 90183317 90183999 -94104663 - L1PBb LINE L1 -4821 2387 1695 1199 304 13 45 chr4 90183985 90184466 -94104196 - L1PBb LINE L1 -5286 1922 1366 * 414 312 68 47 chr4 90184626 90184905 -94103757 - L1PBb LINE L1 -5869 1340 1056 * 855 351 75 24 chr4 90184893 90185608 -94103054 - L1PBb LINE L1 -6437 772 21 3183 259 99 90 chr4 90185706 90186338 -94102324 - L1 LINE L1 -1068 5078 4453 1962 107 29 61 chr4 90186338 90186648 -94102014 - AluSg SINE Alu -10 300 1 3183 259 99 90 chr4 90186648 90186831 -94101831 - L1 LINE L1 -1693 4453 4273 219 114 0 0 chr4 90186831 90186866 -94101796 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 3183 259 99 90 chr4 90186866 90187608 -94101054 - L1 LINE L1 -1873 4273 3539 2066 157 0 0 chr4 90187608 90187920 -94100742 - AluSx SINE Alu 0 312 1 3183 259 99 90 chr4 90187920 90188478 -94100184 - L1 LINE L1 -2607 3539 2988 1726 174 30 7 chr4 90188478 90188783 -94099879 - AluJb SINE Alu 0 312 1 3183 259 99 90 chr4 90188783 90188976 -94099686 - L1 LINE L1 -3158 2988 2798 1015 202 0 17 chr4 90188976 90189154 -94099508 - FAM SINE Alu 0 175 1 3183 259 99 90 chr4 90189154 90189623 -94099039 - L1 LINE L1 -3348 2798 2267 2005 142 0 43 chr4 90189623 90189947 -94098715 - AluSx SINE Alu -2 310 1 3183 259 99 90 chr4 90189947 90190052 -94098610 - L1 LINE L1 -3879 2267 2164 575 194 134 22 chr4 90190118 90190252 -94098410 - MER5A DNA MER1_type -37 152 4 2168 138 43 11 chr4 90191219 90191558 -94097104 - Tigger3(Golem) DNA MER2_type -1 3028 2679 290 122 0 0 chr4 90191558 90191599 -94097063 - MSTB LTR MaLR 0 426 386 1051 98 0 0 chr4 90191599 90191732 -94096930 + AluSx SINE Alu 1 133 -179 2384 54 0 4 chr4 90191735 90192015 -94096647 + AluY SINE Alu 1 279 -32 1034 155 0 6 chr4 90192040 90192201 -94096461 + AluSx SINE Alu 121 280 -32 11493 106 30 22 chr4 90192301 90194706 -94093956 - HERVH LTR ERV1 -5221 2492 1 752 76 0 19 chr4 90194708 90194813 -94093849 - LTR7 LTR ERV1 -2 448 346 557 164 10 0 chr4 90194814 90194918 -94093744 - L1M4 LINE L1 -857 5289 5185 2623 184 79 21 chr4 90194918 90195487 -94093175 - Tigger6a DNA MER2_type -481 602 1 710 290 222 13 chr4 90196825 90197221 -94091441 - L2 LINE L2 -4 3309 2831 511 227 131 20 chr4 90197512 90197710 -94090952 - L1MC5 LINE L1 -635 7326 7107 225 273 38 53 chr4 90197766 90197898 -94090764 - L1MC4a LINE L1 -1220 6588 6459 22 0 0 0 chr4 90198193 90198215 -94090447 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 90199071 90199101 -94089561 + AT_rich Low_complexity Low_complexity 1 30 0 1293 157 30 4 chr4 90199482 90199712 -94088950 + MER46A DNA MER2_type 1 236 0 226 294 73 0 chr4 90200540 90200608 -94088054 - MIR SINE MIR -118 144 72 388 251 241 21 chr4 90201339 90201530 -94087132 - MIR SINE MIR -1 261 29 383 316 43 7 chr4 90201899 90202038 -94086624 + MIR SINE MIR 13 156 -106 484 297 93 21 chr4 90202083 90202319 -94086343 + MIR SINE MIR 4 256 -6 419 265 88 0 chr4 90202323 90202459 -94086203 - L2 LINE L2 -2 3311 3164 741 256 195 29 chr4 90202550 90202929 -94085733 + HAL1 LINE L1 1 442 -2065 1350 267 184 20 chr4 90202934 90203642 -94085020 + HAL1 LINE L1 1056 1879 -628 543 255 160 28 chr4 90203720 90204183 -94084479 + HAL1 LINE L1 1689 2212 -295 1523 161 84 0 chr4 90204220 90204519 -94084143 - MER46B DNA MER2_type 0 236 38 298 292 105 47 chr4 90204622 90204785 -94083877 + HAL1 LINE L1 2075 2227 -280 1667 163 68 0 chr4 90204785 90205123 -94083539 - MER46B DNA MER2_type 0 236 1 298 292 105 47 chr4 90205123 90205360 -94083302 + HAL1 LINE L1 2227 2498 -9 234 0 0 0 chr4 90205861 90205887 -94082775 + (T)n Simple_repeat Simple_repeat 1 26 0 2472 41 0 35 chr4 90205931 90206269 -94082393 - L1PA5 LINE L1 0 6154 5829 1920 142 6 6 chr4 90257331 90257669 -94030993 - L1PA5 LINE L1 -487 5669 5332 1848 173 12 3 chr4 90257770 90258116 -94030546 - L1M2b LINE L1 -6860 349 1 360 301 86 53 chr4 90258383 90258592 -94030070 - L1ME4a LINE L1 -176 5945 5730 209 286 71 0 chr4 90258767 90258823 -94029839 - L2 LINE L2 -38 3275 3216 510 283 59 23 chr4 90258924 90259141 -94029521 - MIR SINE MIR -32 230 10 485 332 35 25 chr4 90259125 90259327 -94029335 + L3 LINE CR1 1079 1282 -295 * 528 299 64 15 chr4 90259445 90259649 -94029013 - L2 LINE L2 -2 3311 3098 1432 154 0 4 chr4 90260961 90261195 -94027467 - L1P3 LINE L1 -6219 242 10 * 6199 209 80 45 chr4 90261193 90262995 -94025667 - L1M2 LINE L1 -4309 2900 1037 401 297 0 8 chr4 90262987 90263105 -94025557 - L1M2 LINE L1 -6570 639 523 * 1168 39 26 0 chr4 90263205 90263359 -94025303 + Tigger1 DNA MER2_type 1760 1917 -501 7168 106 16 3 chr4 90263404 90264510 -94024152 - Tigger1 DNA MER2_type -128 2290 1170 2530 91 136 5 chr4 90264510 90264906 -94023756 - LTR7 LTR ERV1 -2 448 1 2644 57 7 44 chr4 90264906 90265311 -94023351 - HERVH LTR ERV1 0 7713 7324 346 150 67 0 chr4 90265311 90265371 -94023291 - HERVH LTR ERV1 -1894 5819 5756 436 133 13 27 chr4 90265477 90265552 -94023110 + Charlie3 DNA MER1_type 2638 2711 0 * 1627 184 54 30 chr4 90265552 90265920 -94022742 + MSTD LTR MaLR 20 396 0 510 300 63 47 chr4 90266119 90266309 -94022353 + MIR SINE MIR 70 262 0 509 358 51 24 chr4 90266363 90266659 -94022003 - L2 LINE L2 -1 3312 3009 24 0 0 0 chr4 90266857 90266881 -94021781 + AT_rich Low_complexity Low_complexity 1 24 0 334 320 96 8 chr4 90266991 90267116 -94021546 + MIR SINE MIR 16 151 -57 1874 124 1 0 chr4 90267720 90268175 -94020487 + L1P5 LINE L1 5078 5533 -618 566 146 0 27 chr4 90268242 90268352 -94020310 + L1 LINE L1 3287 3393 -2753 1962 143 0 7 chr4 90269228 90269535 -94019127 + AluSx SINE Alu 1 305 -7 2391 106 0 0 chr4 90269539 90269850 -94018812 + AluSx SINE Alu 1 311 -1 7848 106 1 1 chr4 90270481 90271636 -94017026 - HERVH LTR ERV1 -2576 5137 3994 3242 109 0 6 chr4 90271690 90272194 -94016468 - HERVH LTR ERV1 -3721 3992 3492 810 136 27 0 chr4 90272184 90272331 -94016331 - HERVH LTR ERV1 -4423 3290 3140 * 8096 112 2 9 chr4 90272325 90273608 -94015054 - HERVH LTR ERV1 -4726 2987 1715 17466 89 4 4 chr4 90273713 90276366 -94012296 + L1P3 LINE L1 1211 3864 -2597 783 175 0 0 chr4 90276658 90276784 -94011878 - FLAM_A SINE Alu -6 127 2 344 262 93 0 chr4 90277768 90277875 -94010787 - L2 LINE L2 0 3313 3197 742 149 0 34 chr4 90278655 90278803 -94009859 + L1MB4 LINE L1 6037 6179 -1 21 0 0 0 chr4 90279582 90279603 -94009059 + AT_rich Low_complexity Low_complexity 1 21 0 290 286 11 11 chr4 90280029 90280120 -94008542 - MIR SINE MIR -25 237 147 202 212 15 30 chr4 90280121 90280187 -94008475 + (TTA)n Simple_repeat Simple_repeat 1 65 0 517 275 84 7 chr4 90280188 90280330 -94008332 - MIR SINE MIR -105 157 5 225 265 15 15 chr4 90280769 90280837 -94007825 - MIR3 SINE MIR -130 78 11 198 346 81 71 chr4 90280823 90281382 -94007280 - L2 LINE L2 -94 3178 2599 * 236 367 18 9 chr4 90281509 90281618 -94007044 - L2 LINE L2 -980 2334 2225 334 338 42 21 chr4 90281619 90281761 -94006901 - L2 LINE L2 -2 3270 3126 510 259 7 34 chr4 90282021 90282168 -94006494 - MIR SINE MIR -11 251 109 308 157 0 0 chr4 90282650 90282701 -94005961 - L2 LINE L2 -1 3312 3262 1418 193 84 11 chr4 90282701 90282976 -94005686 - AluJb SINE Alu -9 303 9 745 326 127 58 chr4 90282983 90283827 -94004835 - L2 LINE L2 -42 3271 2361 1764 172 31 26 chr4 90284973 90285356 -94003306 - L1ME1 LINE L1 -43 6123 5739 842 216 75 35 chr4 90285416 90285612 -94003050 - L1MEc LINE L1 -4157 2239 2021 1636 162 30 0 chr4 90285612 90285883 -94002779 - AluJo SINE Alu -23 289 11 842 216 75 35 chr4 90285883 90286033 -94002629 - L1MEc LINE L1 -4375 2021 1879 312 313 60 15 chr4 90286543 90286677 -94001985 - MIR3 SINE MIR -11 197 58 321 253 0 22 chr4 90286924 90287015 -94001647 + MIR SINE MIR 171 259 -3 544 291 122 17 chr4 90287552 90287782 -94000880 - MIR SINE MIR -8 254 1 253 310 50 0 chr4 90288362 90288462 -94000200 - MIR SINE MIR -12 250 146 2242 90 0 0 chr4 90288533 90288821 -93999841 - AluSc SINE Alu -21 288 1 340 247 25 0 chr4 90288821 90288902 -93999760 + L2 LINE L2 3231 3313 0 * 348 214 26 0 chr4 90288898 90288983 -93999679 - MIR SINE MIR -56 152 60 324 265 88 29 chr4 90289503 90289605 -93999057 + MIR SINE MIR 40 147 -115 5634 86 2 36 chr4 90290120 90290959 -93997703 + L1PB2 LINE L1 5287 6096 -55 1950 139 24 3 chr4 90290959 90291247 -93997415 + AluSx SINE Alu 1 294 -18 5634 86 2 36 chr4 90291247 90291298 -93997364 + L1PB2 LINE L1 6096 6147 -4 189 114 0 0 chr4 90291359 90291372 -93997290 + (GAAAA)n Simple_repeat Simple_repeat 5 17 -22 623 188 0 76 chr4 90291372 90291516 -93997146 + AluJ SINE Alu 1 133 -169 189 114 0 0 chr4 90291516 90291537 -93997125 + (GAAAA)n Simple_repeat Simple_repeat 16 39 0 566 189 11 149 chr4 90291537 90291712 -93996950 + AluJ SINE Alu 129 279 -33 261 0 0 0 chr4 90291712 90291741 -93996921 + (CAAT)n Simple_repeat Simple_repeat 3 31 0 27 0 0 0 chr4 90291805 90291832 -93996830 + AT_rich Low_complexity Low_complexity 1 27 0 1498 188 82 17 chr4 90291832 90292175 -93996487 - MSTD LTR MaLR -32 396 1 1088 219 75 39 chr4 90292639 90292999 -93995663 + MER39 LTR ERV1 288 660 -47 2569 58 0 0 chr4 90293739 90294048 -93994614 + AluY SINE Alu 1 309 -2 2339 96 0 6 chr4 90294472 90294816 -93993846 - AluSx SINE Alu 0 342 1 1440 152 4 45 chr4 90295177 90295441 -93993221 + AluJo SINE Alu 60 312 0 704 202 8 0 chr4 90295932 90296056 -93992606 - FLAM_A SINE Alu -8 125 1 323 221 53 91 chr4 90296060 90296268 -93992394 - L1MEc LINE L1 -4766 1449 1250 6480 182 30 33 chr4 90296302 90297104 -93991558 - L1PA16 LINE L1 -16 6150 5347 2103 157 0 0 chr4 90297104 90297409 -93991253 - AluSx SINE Alu -7 305 1 6480 182 30 33 chr4 90297409 90297590 -93991072 - L1PA16 LINE L1 -819 5347 5167 1772 196 3 0 chr4 90297590 90297886 -93990776 - AluJo SINE Alu -15 297 1 6480 182 30 33 chr4 90297886 90299754 -93988908 - L1PA16 LINE L1 -999 5167 3287 3582 264 44 15 chr4 90299767 90301108 -93987554 - L1MEc LINE L1 -4951 1344 36 611 291 33 29 chr4 90301522 90301732 -93986930 + MIR SINE MIR 23 233 -29 4970 202 11 15 chr4 90301836 90303022 -93985640 + L1 LINE L1 3987 5167 -979 2040 78 4 7 chr4 90303022 90303292 -93985370 + AluSg SINE Alu 34 302 -8 652 190 0 0 chr4 90303294 90303431 -93985231 - Charlie5 DNA MER1_type -2475 137 1 654 304 70 41 chr4 90306437 90306851 -93981811 + L3 LINE CR1 771 1196 -381 301 314 102 15 chr4 90307148 90307285 -93981377 + L3 LINE CR1 1227 1375 -202 545 229 102 8 chr4 90307288 90307533 -93981129 - HAL1 LINE L1 -1220 1287 1020 2796 117 7 2 chr4 90307533 90307959 -93980703 - MER57B LTR ERV1 0 434 7 1267 271 156 35 chr4 90307966 90308536 -93980126 - HAL1 LINE L1 -1485 1022 522 2739 184 225 53 chr4 90308536 90309406 -93979256 + LTR28 LTR ERV1 1 1020 0 1267 271 156 35 chr4 90309406 90309745 -93978917 - HAL1 LINE L1 -1985 522 3 469 299 203 16 chr4 90309883 90310204 -93978458 + MLT1J LTR MaLR 1 381 -130 213 211 0 0 chr4 90310317 90310355 -93978307 + L3 LINE CR1 1532 1569 -8 323 363 27 12 chr4 90310803 90310954 -93977708 + MIR SINE MIR 33 184 -24 183 259 188 9 chr4 90312236 90312348 -93976314 + MIR SINE MIR 90 221 -41 1619 76 5 0 chr4 90312623 90312821 -93975841 + AluSx SINE Alu 1 199 -113 2105 119 0 3 chr4 90312980 90313275 -93975387 + AluSx SINE Alu 1 294 -18 472 282 19 14 chr4 90313398 90313607 -93975055 + L1M4 LINE L1 3956 4165 -1981 364 215 41 33 chr4 90313697 90313818 -93974844 + L1M4 LINE L1 4630 4751 -1395 1497 124 51 36 chr4 90314561 90314836 -93973826 + THE1B LTR MaLR 1 279 -85 1803 120 0 23 chr4 90314836 90315094 -93973568 - AluSc SINE Alu -57 252 1 492 62 0 0 chr4 90315099 90315163 -93973499 + (TTTC)n Simple_repeat Simple_repeat 2 65 0 2600 55 0 0 chr4 90315165 90315476 -93973186 - AluY SINE Alu 0 311 1 1299 106 0 0 chr4 90315488 90315668 -93972994 - AluSp SINE Alu -5 308 129 2264 70 33 3 chr4 90315671 90315973 -93972689 - AluSx SINE Alu -1 311 1 442 119 0 0 chr4 90315979 90316046 -93972616 + THE1B LTR MaLR 309 375 0 803 207 12 6 chr4 90317619 90317783 -93970879 - FRAM SINE Alu -12 164 1 267 376 35 35 chr4 90318265 90318435 -93970227 + L2 LINE L2 2631 2800 -514 715 255 69 44 chr4 90318521 90318882 -93969780 - Charlie7 DNA MER1_type -1923 689 320 960 75 15 0 chr4 90319107 90319241 -93969421 - L1MA3 LINE L1 0 6305 6170 289 230 0 17 chr4 90319445 90319543 -93969119 - MLT1E LTR MaLR -211 443 307 544 120 50 0 chr4 90319579 90319679 -93968983 - L1M1 LINE L1 -7432 133 29 5563 123 21 23 chr4 90319701 90321190 -93967472 - L1MA3 LINE L1 -121 6184 4695 814 174 0 12 chr4 90321195 90321356 -93967306 - L1M1 LINE L1 -7405 160 2 806 282 81 57 chr4 90321401 90322343 -93966319 + L1MEd LINE L1 310 1166 -4861 597 246 78 18 chr4 90322564 90322731 -93965931 + MIR SINE MIR 65 241 -21 199 279 0 33 chr4 90322895 90322956 -93965706 - L2 LINE L2 -5 3308 3250 672 231 49 24 chr4 90322994 90323244 -93965418 + MLT1J1 LTR MaLR 1 256 -194 245 211 0 16 chr4 90323270 90323341 -93965321 + MLT1J1 LTR MaLR 339 402 -44 272 286 14 0 chr4 90323382 90323452 -93965210 + L2 LINE L2 3201 3271 -1 236 170 19 0 chr4 90323455 90323508 -93965154 + GA-rich Low_complexity Low_complexity 2 55 0 219 268 0 0 chr4 90324814 90324870 -93963792 + (TA)n Simple_repeat Simple_repeat 1 56 0 1799 127 0 0 chr4 90325333 90325609 -93963053 - L1PB1 LINE L1 -8 6143 5868 1009 168 0 5 chr4 90325610 90325818 -93962844 - L1 LINE L1 -1409 4737 4531 258 175 53 0 chr4 90325819 90325876 -93962786 - L1M4 LINE L1 -1241 4905 4846 568 214 14 0 chr4 90325879 90326019 -93962643 - L1M4 LINE L1 -1443 4703 4562 25 31 0 0 chr4 90326624 90326656 -93962006 + AT_rich Low_complexity Low_complexity 1 32 0 215 246 46 0 chr4 90326691 90326756 -93961906 + (TA)n Simple_repeat Simple_repeat 2 69 0 1885 125 13 58 chr4 90326881 90327059 -93961603 - AluSq SINE Alu -15 298 138 2422 82 0 3 chr4 90327059 90327365 -93961297 - AluY SINE Alu -6 305 1 1885 125 13 58 chr4 90327365 90327497 -93961165 - AluSq SINE Alu -175 138 2 565 370 139 34 chr4 90327627 90328931 -93959731 + L2 LINE L2 228 1668 -1646 6655 131 49 6 chr4 90329449 90329884 -93958778 + Tigger1 DNA MER2_type 5 420 -1998 1750 206 0 10 chr4 90329884 90330195 -93958467 - AluJo SINE Alu -3 309 2 6655 131 49 6 chr4 90330195 90330873 -93957789 + Tigger1 DNA MER2_type 420 1166 -1252 2431 99 145 5 chr4 90330874 90331267 -93957395 + LTR7 LTR ERV1 1 448 -2 8540 103 3 56 chr4 90331269 90332805 -93955857 + HERVH LTR ERV1 1 1455 -6258 2316 53 0 0 chr4 90333039 90333323 -93955339 + L1PA6 LINE L1 5865 6148 -6 25 0 0 0 chr4 90334701 90334726 -93953936 + AT_rich Low_complexity Low_complexity 1 25 0 258 250 78 17 chr4 90334949 90335065 -93953597 + HAL1 LINE L1 1 123 -2384 2276 94 7 0 chr4 90335111 90335408 -93953254 + AluSx SINE Alu 1 299 -13 400 252 46 55 chr4 90336176 90336330 -93952332 - MIR SINE MIR -67 141 38 397 251 164 21 chr4 90337785 90338087 -93950575 - L1MC/D LINE L1 -419 5702 5341 232 186 291 0 chr4 90338379 90338465 -93950197 + MLT1G LTR MaLR 464 574 -16 1285 183 40 126 chr4 90338759 90339212 -93949450 - MLT2D LTR ERVL 0 414 1 1749 217 217 17 chr4 90339364 90340023 -93948639 - LTR50 LTR ERVL -4 791 1 481 226 62 14 chr4 90340030 90340176 -93948486 + Charlie7 DNA MER1_type 5 157 -2455 2199 119 0 0 chr4 90340400 90340695 -93947967 + AluSx SINE Alu 1 295 -17 218 385 31 0 chr4 90341313 90341409 -93947253 - L2 LINE L2 -538 2776 2678 1000 167 72 5 chr4 90341889 90342110 -93946552 - ORSL DNA AcHobo -28 247 12 340 268 146 34 chr4 90342127 90342332 -93946330 - MLT1K LTR MaLR -358 230 3 1937 138 3 28 chr4 90342753 90343073 -93945589 + AluSx SINE Alu 1 312 0 2143 91 0 10 chr4 90343290 90343586 -93945076 - AluY SINE Alu -18 293 1 393 357 34 48 chr4 90343928 90344019 -93944643 + L2 LINE L2 2001 2092 -1222 2588 158 21 0 chr4 90344019 90344438 -93944224 - MSTA LTR MaLR 0 428 1 393 357 34 48 chr4 90344438 90344524 -93944138 + L2 LINE L2 2092 2178 -1136 1871 144 58 0 chr4 90344524 90344815 -93943847 - AluSx SINE Alu -4 308 1 393 357 34 48 chr4 90344815 90344930 -93943732 + L2 LINE L2 2178 2290 -1024 450 316 112 75 chr4 90344944 90345753 -93942909 + L2 LINE L2 2422 3272 0 854 193 73 0 chr4 90345941 90346091 -93942571 - FAM SINE Alu -13 162 2 5217 123 6 7 chr4 90347997 90348840 -93939822 - L1PA14 LINE L1 0 6161 5320 1955 150 23 13 chr4 90348882 90349189 -93939473 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr4 90349256 90349277 -93939385 + AT_rich Low_complexity Low_complexity 1 21 0 337 226 146 67 chr4 90349488 90349652 -93939010 - MLT1H LTR MaLR -52 497 321 228 163 0 20 chr4 90349902 90349951 -93938711 - MLT1H LTR MaLR -488 61 14 680 287 142 24 chr4 90350683 90351014 -93937648 - L3 LINE CR1 -290 1287 918 204 40 0 0 chr4 90351117 90351142 -93937520 + (TA)n Simple_repeat Simple_repeat 2 26 0 1723 182 0 3 chr4 90351893 90352190 -93936472 + AluJo SINE Alu 1 296 -16 322 203 0 0 chr4 90352191 90352255 -93936407 - L1MC4 LINE L1 -1339 6703 6640 26 64 0 0 chr4 90354009 90354056 -93934606 + AT_rich Low_complexity Low_complexity 1 47 0 323 316 188 0 chr4 90354496 90354629 -93934033 - MIR3 SINE MIR -20 188 31 226 210 140 80 chr4 90354819 90354919 -93933743 + L3 LINE CR1 568 673 -904 302 313 0 70 chr4 90355293 90355421 -93933241 - MER117 DNA MER1_type -78 119 1 338 135 0 0 chr4 90356748 90356800 -93931862 + U6 snRNA snRNA 8 59 -48 735 130 14 7 chr4 90356805 90356943 -93931719 + GA-rich Low_complexity Low_complexity 2 140 0 35 41 0 0 chr4 90357061 90357110 -93931552 + AT_rich Low_complexity Low_complexity 1 49 0 2193 112 37 0 chr4 90357353 90357649 -93931013 - AluSq SINE Alu -2 311 5 180 227 68 0 chr4 90359355 90359399 -93929263 + L3 LINE CR1 642 688 -889 1495 183 65 42 chr4 90360206 90360562 -93928100 + MLT1A1 LTR MaLR 2 365 0 1490 260 100 55 chr4 90361374 90361883 -93926779 + Charlie2b DNA MER1_type 36 578 -2204 1829 173 31 0 chr4 90361883 90362172 -93926490 + AluJb SINE Alu 3 300 -12 1490 260 100 55 chr4 90362172 90362262 -93926400 + Charlie2b DNA MER1_type 578 662 -2120 433 205 8 87 chr4 90362262 90362389 -93926273 + L2 LINE L2 731 847 -2467 342 279 64 7 chr4 90362390 90362530 -93926132 + L2 LINE L2 1445 1592 -1722 418 136 0 0 chr4 90362537 90362596 -93926066 + AluJ/FRAM SINE Alu 224 282 -30 2310 269 210 16 chr4 90362627 90362820 -93925842 + L2 LINE L2 1609 1763 -1550 2247 110 23 0 chr4 90362820 90363121 -93925541 - AluSx SINE Alu -4 308 1 2310 269 210 16 chr4 90363121 90363535 -93925127 + L2 LINE L2 1763 2095 -1218 258 32 0 0 chr4 90363535 90363566 -93925096 + (CA)n Simple_repeat Simple_repeat 2 32 0 2310 269 210 16 chr4 90363566 90364391 -93924271 + L2 LINE L2 2095 3313 0 2124 138 0 6 chr4 90364806 90365118 -93923544 + AluJb SINE Alu 1 310 -2 981 287 52 9 chr4 90366341 90366669 -93921993 + L3b LINE CR1 1146 1487 -96 219 235 91 17 chr4 90367635 90367695 -93920967 - MIR SINE MIR -103 105 41 182 114 0 29 chr4 90367779 90367814 -93920848 + (TTCCC)n Simple_repeat Simple_repeat 2 35 0 826 233 114 0 chr4 90367818 90368063 -93920599 + L1MC4 LINE L1 7434 7706 -336 331 324 28 9 chr4 90368119 90368227 -93920435 + HERVL40 LTR ERVL 2009 2118 -3412 1718 200 32 21 chr4 90368231 90368606 -93920056 + LTR40b LTR ERVL 84 462 0 32 26 0 0 chr4 90369209 90369248 -93919414 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr4 90369282 90369310 -93919352 + AT_rich Low_complexity Low_complexity 1 28 0 995 96 22 0 chr4 90369691 90369827 -93918835 + AluSc SINE Alu 155 293 -16 626 303 63 21 chr4 90369879 90370117 -93918545 + MIR SINE MIR 15 262 0 274 212 80 26 chr4 90370243 90370356 -93918306 - L1ME4a LINE L1 -11 6110 5992 2256 90 3 7 chr4 90371317 90371607 -93917055 + AluSc SINE Alu 1 289 -20 392 240 10 10 chr4 90371945 90372045 -93916617 - LTR33 LTR ERVL 0 521 422 193 290 20 70 chr4 90372068 90372168 -93916494 + L3 LINE CR1 588 682 -895 3382 135 19 11 chr4 90372402 90372922 -93915740 + Tigger7 DNA MER2_type 2 525 -208 418 228 11 11 chr4 90372916 90373008 -93915654 + Tigger7 DNA MER2_type 2496 2587 0 * 313 299 158 49 chr4 90374462 90374646 -93914016 + MIR SINE MIR 23 226 -36 354 284 52 15 chr4 90374724 90374858 -93913804 - MIR SINE MIR -4 258 120 320 290 99 87 chr4 90374940 90375102 -93913560 - MER5A DNA MER1_type -1 177 25 943 110 76 141 chr4 90375720 90375760 -93912902 - Charlie5 DNA MER1_type -2 2622 2581 1409 190 48 3 chr4 90375760 90376050 -93912612 - AluJo SINE Alu -9 303 1 943 110 76 141 chr4 90376050 90376135 -93912527 - Charlie5 DNA MER1_type -43 2581 2492 2286 92 0 0 chr4 90376135 90376427 -93912235 - AluSx SINE Alu -20 292 1 943 110 76 141 chr4 90376427 90376590 -93912072 - Charlie5 DNA MER1_type -132 2492 2352 2278 86 3 3 chr4 90376632 90376934 -93911728 + AluSx SINE Alu 3 304 -8 693 190 0 0 chr4 90376936 90377073 -93911589 - Charlie5 DNA MER1_type -2475 137 1 21 57 0 0 chr4 90380310 90380345 -93908317 + AT_rich Low_complexity Low_complexity 1 35 0 187 114 29 29 chr4 90382031 90382066 -93906596 - MIR SINE MIR -13 249 215 388 249 95 75 chr4 90382148 90382192 -93906470 - L1MC4a LINE L1 -1869 5939 5897 2341 86 3 0 chr4 90382192 90382482 -93906180 - AluSp SINE Alu -22 291 1 388 249 95 75 chr4 90382482 90382678 -93905984 - L1MC4a LINE L1 -1911 5897 5694 213 284 68 0 chr4 90382816 90382890 -93905772 - MIR SINE MIR -50 212 134 22 35 0 0 chr4 90384367 90384396 -93904266 + AT_rich Low_complexity Low_complexity 1 29 0 913 217 0 0 chr4 90386459 90386625 -93902037 + FRAM SINE Alu 1 166 0 1888 107 8 8 chr4 90387888 90388151 -93900511 - AluSg SINE Alu -47 263 1 383 209 165 43 chr4 90388316 90388546 -93900116 - L1MC4a LINE L1 -1872 5936 5679 589 261 143 35 chr4 90388561 90388791 -93899871 - L1MC4a LINE L1 -2059 5749 5495 2633 143 29 16 chr4 90389222 90389668 -93898994 - Tigger2 DNA MER2_type 0 2718 2267 528 101 0 0 chr4 90389652 90389721 -93898941 - Tigger2 DNA MER2_type -2649 69 1 * 803 241 9 66 chr4 90391278 90391378 -93897284 - MIR SINE MIR -8 254 150 1894 113 35 35 chr4 90391378 90391687 -93896975 - AluSg SINE Alu 0 309 1 803 241 9 66 chr4 90391687 90391813 -93896849 - MIR SINE MIR -112 150 40 327 85 0 0 chr4 90391891 90391938 -93896724 + (TG)n Simple_repeat Simple_repeat 2 48 0 1690 189 0 19 chr4 90391942 90392254 -93896408 - AluJb SINE Alu -4 308 3 220 342 60 47 chr4 90392347 90392496 -93896166 + MER5A DNA MER1_type 18 168 -21 2344 94 0 0 chr4 90393303 90393600 -93895062 - AluSg1 SINE Alu -12 297 1 459 338 72 22 chr4 90393721 90394041 -93894621 - L3 LINE CR1 -200 1377 1042 1578 152 86 4 chr4 90394150 90394419 -93894243 - AluJo SINE Alu -20 292 2 188 261 0 0 chr4 90394830 90394876 -93893786 - L2 LINE L2 -6 3307 3262 1073 271 56 54 chr4 90395098 90395623 -93893039 - L2 LINE L2 -2 3311 2781 312 333 95 0 chr4 90395724 90395850 -93892812 - MARNA DNA Mariner -381 205 68 2230 103 7 0 chr4 90395949 90396251 -93892411 - AluY SINE Alu -7 304 1 2603 74 25 22 chr4 90396800 90397163 -93891499 - THE1B LTR MaLR 0 364 1 814 275 47 13 chr4 90397580 90397813 -93890849 + MIR SINE MIR 12 252 -10 258 105 0 0 chr4 90398137 90398175 -93890487 + (CA)n Simple_repeat Simple_repeat 2 39 0 225 0 0 0 chr4 90398375 90398400 -93890262 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chr4 90398741 90398769 -93889893 + AT_rich Low_complexity Low_complexity 1 28 0 1150 258 164 17 chr4 90398826 90399241 -93889421 - L2 LINE L2 0 3313 2838 2362 98 0 0 chr4 90399241 90399547 -93889115 - AluSg SINE Alu -4 306 1 2189 119 0 0 chr4 90400228 90400538 -93888124 - AluSx SINE Alu -2 310 1 22 0 0 0 chr4 90400626 90400648 -93888014 + AT_rich Low_complexity Low_complexity 1 22 0 1313 219 36 7 chr4 90400660 90400939 -93887723 - AluJo SINE Alu -25 287 1 825 129 40 84 chr4 90401550 90401753 -93886909 + L1MB2 LINE L1 5936 6132 -39 27 62 0 0 chr4 90402381 90402429 -93886233 + AT_rich Low_complexity Low_complexity 1 48 0 691 274 44 10 chr4 90402736 90402940 -93885722 + MIR SINE MIR 18 228 -34 412 188 0 0 chr4 90403649 90403718 -93884944 + Tigger2 DNA MER2_type 1 69 -2649 * 2339 140 48 43 chr4 90403716 90403963 -93884699 + Tigger2 DNA MER2_type 2280 2531 -187 2416 83 0 0 chr4 90403963 90404264 -93884398 + AluSg SINE Alu 1 301 -9 2339 140 48 43 chr4 90404264 90404453 -93884209 + Tigger2 DNA MER2_type 2531 2718 0 21 0 0 0 chr4 90404453 90404474 -93884188 + AT_rich Low_complexity Low_complexity 1 21 0 2029 145 3 3 chr4 90404878 90405182 -93883480 - AluJb SINE Alu -8 304 1 1820 155 7 20 chr4 90405313 90405616 -93883046 - AluJb SINE Alu -13 299 1 1184 272 54 38 chr4 90406295 90406795 -93881867 - LTR33A LTR ERVL -3 520 13 2185 83 28 0 chr4 90407276 90407564 -93881098 - AluSg SINE Alu -14 296 1 2274 94 0 3 chr4 90407580 90407888 -93880774 - AluY SINE Alu 0 311 5 907 182 6 28 chr4 90408152 90408328 -93880334 - AluJo SINE Alu -14 298 127 1744 174 26 3 chr4 90408597 90408902 -93879760 + AluJo SINE Alu 1 312 0 22 0 0 0 chr4 90409308 90409330 -93879332 + AT_rich Low_complexity Low_complexity 1 22 0 411 230 12 61 chr4 90409426 90409591 -93879071 - L1MC5 LINE L1 -353 7608 7452 307 273 83 45 chr4 90410514 90410646 -93878016 - MIR SINE MIR -56 206 70 222 364 55 18 chr4 90410680 90410790 -93877872 + MIR3 SINE MIR 13 126 -82 2188 102 3 55 chr4 90411537 90411862 -93876800 + AluSg SINE Alu 1 308 -2 1938 143 3 19 chr4 90412705 90413013 -93875649 + AluJo SINE Alu 1 303 -9 291 331 76 7 chr4 90413839 90413984 -93874678 + MER5A DNA MER1_type 35 189 0 26 0 0 0 chr4 90415537 90415563 -93873099 + AT_rich Low_complexity Low_complexity 1 26 0 853 137 0 8 chr4 90415629 90415753 -93872909 + FLAM_C SINE Alu 1 123 -20 180 0 0 0 chr4 90415758 90415778 -93872884 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1371 151 42 3 chr4 90417756 90418040 -93870622 - L1MA7 LINE L1 -6 6285 5991 4324 173 67 10 chr4 90418369 90419303 -93869359 - L1MB5 LINE L1 0 6174 5183 1142 187 5 23 chr4 90419304 90419523 -93869139 - AluJb SINE Alu -19 293 79 366 276 19 0 chr4 90419650 90419755 -93868907 - L1ME LINE L1 -461 5660 5554 1500 210 0 26 chr4 90419948 90420253 -93868409 - AluJo SINE Alu -15 297 1 2289 118 0 0 chr4 90420405 90420718 -93867944 - AluSq SINE Alu 0 313 1 1905 127 14 7 chr4 90420739 90421023 -93867639 - AluSg SINE Alu -24 286 1 285 252 126 47 chr4 90421520 90421647 -93867015 - L2 LINE L2 -211 3102 2966 216 67 0 0 chr4 90422454 90422484 -93866178 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1704 175 0 11 chr4 90422486 90422771 -93865891 - AluJb SINE Alu -30 282 1 182 274 143 12 chr4 90424575 90424659 -93864003 + L2 LINE L2 3219 3313 0 848 142 0 0 chr4 90425492 90425626 -93863036 - MER2 DNA MER2_type -139 206 73 2089 105 3 100 chr4 90425627 90425997 -93862665 + MER1B DNA MER1_type 6 339 0 450 181 0 0 chr4 90425999 90426071 -93862591 - MER2 DNA MER2_type -264 81 10 243 0 0 0 chr4 90426750 90426777 -93861885 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1671 173 14 0 chr4 90426779 90427056 -93861606 - AluJb SINE Alu -31 281 1 1701 163 27 36 chr4 90427056 90427357 -93861305 - AluJb SINE Alu -14 298 1 1081 135 149 21 chr4 90427393 90427674 -93860988 + MER5C DNA MER1_type 4 320 -4 345 287 0 19 chr4 90427977 90428085 -93860577 + CT-rich Low_complexity Low_complexity 2 107 0 765 251 35 30 chr4 90428388 90428568 -93860094 + MIR SINE MIR 10 193 -69 2199 117 0 7 chr4 90428568 90428868 -93859794 + AluSx SINE Alu 1 298 -14 765 251 35 30 chr4 90428868 90428890 -93859772 + MIR SINE MIR 193 213 -49 2261 92 3 0 chr4 90430263 90430558 -93858104 - AluSc SINE Alu -13 296 1 269 294 49 68 chr4 90430712 90430875 -93857787 - L3 LINE CR1 -99 1478 1319 4687 163 45 6 chr4 90431010 90431238 -93857424 - MER21B LTR ERV1 -11 852 634 2007 141 7 10 chr4 90431238 90431535 -93857127 - AluSx SINE Alu -16 296 1 4687 163 45 6 chr4 90431535 90432126 -93856536 - MER21B LTR ERV1 -229 634 1 1549 202 24 24 chr4 90432311 90432652 -93856010 - MLT1A1 LTR MaLR -24 341 1 2164 187 18 93 chr4 90432663 90433262 -93855400 + MLT2B3 LTR ERVL 1 554 0 1540 126 18 0 chr4 90433262 90433485 -93855177 - MLT1A1-int LTR MaLR -6 1729 1503 390 148 0 0 chr4 90434733 90434794 -93853868 + MADE1 DNA Mariner 20 80 0 980 252 49 62 chr4 90435128 90435513 -93853149 + L2 LINE L2 2934 3313 0 3501 50 18 2 chr4 90435531 90435968 -93852694 - MLT2A1 LTR ERVL 0 444 1 215 264 0 19 chr4 90436002 90436055 -93852607 + L2 LINE L2 3221 3272 0 1130 112 0 13 chr4 90436698 90436850 -93851812 + AluSq/x SINE Alu 1 150 -162 449 289 49 21 chr4 90437004 90437146 -93851516 - MIR3 SINE MIR -21 187 42 10493 140 31 18 chr4 90437297 90437992 -93850670 - L1MA2 LINE L1 0 6304 5620 2225 96 0 3 chr4 90437992 90438285 -93850377 - AluSc SINE Alu -17 292 1 10493 140 31 18 chr4 90438285 90440095 -93848567 - L1MA2 LINE L1 -684 5620 3749 2398 89 0 0 chr4 90440095 90440398 -93848264 - AluY SINE Alu -8 303 1 10493 140 31 18 chr4 90440398 90440868 -93847794 - L1MA2 LINE L1 -2555 3749 3287 1688 144 4 29 chr4 90442508 90442786 -93845876 - AluJo SINE Alu -37 275 5 517 298 30 18 chr4 90445314 90445482 -93843180 - MIR SINE MIR -71 191 22 296 302 36 58 chr4 90445424 90445563 -93843099 + MIR SINE MIR 8 143 -119 * 219 408 47 0 chr4 90446722 90446891 -93841771 + L3b LINE CR1 1136 1312 -271 299 221 0 105 chr4 90448013 90448108 -93840554 - MIR3 SINE MIR -13 195 111 644 132 11 109 chr4 90448278 90448331 -93840331 - L1MB4 LINE L1 0 6180 6123 2045 93 0 11 chr4 90448331 90448599 -93840063 - AluSx SINE Alu -12 300 36 644 132 11 109 chr4 90448599 90448719 -93839943 - L1MB4 LINE L1 -57 6123 6024 2117 111 3 0 chr4 90450066 90450354 -93838308 + AluJo SINE Alu 21 309 -3 294 294 184 15 chr4 90450669 90450805 -93837857 + MER5B DNA MER1_type 20 178 0 2114 108 4 0 chr4 90451096 90451375 -93837287 + AluSx SINE Alu 1 280 -32 2194 110 0 10 chr4 90452686 90452994 -93835668 - AluSx SINE Alu -7 305 1 2308 110 0 3 chr4 90453007 90453317 -93835345 - AluSc SINE Alu 0 309 1 1072 222 64 92 chr4 90453491 90453959 -93834703 - LTR16A1 LTR ERVL 0 457 3 726 270 0 56 chr4 90454557 90454772 -93833890 - L2 LINE L2 0 3313 3111 301 251 25 83 chr4 90454874 90455049 -93833613 - L2 LINE L2 -319 2953 2788 23 33 0 0 chr4 90455776 90455806 -93832856 + AT_rich Low_complexity Low_complexity 1 30 0 272 304 87 0 chr4 90456069 90456161 -93832501 + MIR3 SINE MIR 78 177 -31 207 0 0 0 chr4 90456473 90456496 -93832166 + (TA)n Simple_repeat Simple_repeat 2 24 0 1473 124 50 0 chr4 90457371 90457589 -93831073 + MER30 DNA MER1_type 2 230 0 271 171 0 0 chr4 90458108 90458149 -93830513 - LTR3b LTR ERVK 0 500 460 3355 109 12 32 chr4 90458150 90458656 -93830006 - LTR3b LTR ERVK -4 496 1 2046 117 3 20 chr4 90458664 90458963 -93829699 + AluSx SINE Alu 1 294 -18 445 341 153 0 chr4 90459475 90459645 -93829017 + MIR SINE MIR 23 218 -44 302 305 219 8 chr4 90460981 90461237 -93827425 - L2 LINE L2 -566 2748 2439 202 361 71 24 chr4 90461337 90461506 -93827156 + L2 LINE L2 2309 2485 -829 189 0 0 0 chr4 90461784 90461805 -93826857 + (T)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr4 90463424 90463445 -93825217 + AT_rich Low_complexity Low_complexity 1 21 0 304 302 164 8 chr4 90463629 90463802 -93824860 - MIR SINE MIR -49 213 14 296 333 111 66 chr4 90465426 90465931 -93822731 - L2 LINE L2 -18 3254 2736 22 0 0 0 chr4 90465940 90465962 -93822700 + AT_rich Low_complexity Low_complexity 1 22 0 658 255 101 24 chr4 90465966 90466075 -93822587 - MIR SINE MIR -2 260 161 2181 62 52 10 chr4 90466075 90466364 -93822298 - AluY SINE Alu -10 301 1 658 255 101 24 chr4 90466364 90466462 -93822200 - MIR SINE MIR -101 161 37 2140 113 0 0 chr4 90467976 90468251 -93820411 + AluSx SINE Alu 1 275 -37 275 70 0 23 chr4 90468254 90468297 -93820365 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 1211 208 61 90 chr4 90469056 90469252 -93819410 - MLT1C LTR MaLR -2 465 265 4171 123 97 1 chr4 90469252 90469725 -93818937 - L1MA8 LINE L1 -3 6288 5719 423 0 0 0 chr4 90469725 90469772 -93818890 + (TG)n Simple_repeat Simple_repeat 2 48 0 4171 123 97 1 chr4 90469772 90470029 -93818633 - L1MA8 LINE L1 -572 5719 5488 1211 208 61 90 chr4 90470029 90470308 -93818354 - MLT1C LTR MaLR -202 265 4 502 125 38 0 chr4 90470336 90470416 -93818246 - MER51A LTR ERV1 -81 553 471 1028 136 0 0 chr4 90470620 90470760 -93817902 - AluSg/x SINE Alu -40 272 133 212 278 153 0 chr4 90470949 90471021 -93817641 + MIR SINE MIR 50 132 -130 23 0 0 0 chr4 90471098 90471121 -93817541 + AT_rich Low_complexity Low_complexity 1 23 0 1963 184 53 63 chr4 90473082 90473592 -93815070 - MLT1D LTR MaLR 0 505 1 277 314 97 16 chr4 90474089 90474215 -93814447 - MIR SINE MIR -54 154 13 492 321 127 0 chr4 90475343 90475611 -93813051 + L1MC4a LINE L1 5609 5910 -1898 863 69 121 0 chr4 90475747 90475863 -93812799 + AluSg/x SINE Alu 165 294 -18 1743 146 60 0 chr4 90479044 90479342 -93809320 - AluSx SINE Alu 0 314 1 227 200 77 0 chr4 90479432 90479497 -93809165 - HAL1 LINE L1 -333 2174 2105 23 33 0 0 chr4 90480020 90480050 -93808612 + AT_rich Low_complexity Low_complexity 1 30 0 180 217 0 0 chr4 90480382 90480428 -93808234 + (CATA)n Simple_repeat Simple_repeat 3 48 0 212 217 17 17 chr4 90480696 90480756 -93807906 + (TATATG)n Simple_repeat Simple_repeat 2 61 0 1592 106 59 33 chr4 90480761 90480993 -93807669 + Tigger5 DNA MER2_type 4 229 -2094 2156 106 10 3 chr4 90480993 90481286 -93807376 - AluSx SINE Alu -17 295 1 1592 106 59 33 chr4 90481286 90481369 -93807293 + Tigger5 DNA MER2_type 229 2323 0 423 237 61 0 chr4 90481700 90481814 -93806848 - MIR SINE MIR -56 206 86 32 0 0 0 chr4 90481814 90481846 -93806816 + AT_rich Low_complexity Low_complexity 1 32 0 12657 47 0 0 chr4 90481846 90484176 -93804486 - L1PA5 LINE L1 -8 6146 3816 181 262 0 0 chr4 90484302 90484344 -93804318 - MIR SINE MIR -109 153 112 529 256 70 1 chr4 90486457 90486589 -93802073 - MIR SINE MIR -36 172 33 2143 79 11 4 chr4 90486657 90486959 -93801703 - AluY SINE Alu 0 304 1 24 0 0 0 chr4 90488247 90488271 -93800391 + AT_rich Low_complexity Low_complexity 1 24 0 615 213 16 0 chr4 90488385 90488507 -93800155 + MER5C DNA MER1_type 1 124 -200 2202 122 0 6 chr4 90489884 90490195 -93798467 - AluSg SINE Alu -1 309 1 795 254 172 50 chr4 90490206 90490590 -93798072 + L2 LINE L2 2752 3236 -77 2322 82 7 3 chr4 90490590 90490893 -93797769 - AluY SINE Alu -7 304 1 795 254 172 50 chr4 90490893 90490982 -93797680 + L2 LINE L2 3236 3313 0 242 219 41 0 chr4 90491807 90491880 -93796782 + (TA)n Simple_repeat Simple_repeat 1 76 0 390 323 127 5 chr4 90492096 90492285 -93796377 + MIR SINE MIR 39 250 -12 351 306 54 0 chr4 90492446 90492557 -93796105 - MIR SINE MIR -24 238 122 2105 70 4 4 chr4 90492921 90493192 -93795470 - AluY SINE Alu -2 309 39 853 227 86 0 chr4 90494100 90494298 -93794364 + MER58A DNA MER1_type 2 216 -8 309 51 0 0 chr4 90495249 90495288 -93793374 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1890 114 0 12 chr4 90495300 90495555 -93793107 - AluSx SINE Alu -57 255 4 330 274 92 39 chr4 90495559 90495712 -93792950 + MIR SINE MIR 102 262 0 27 73 0 0 chr4 90496010 90496065 -93792597 + AT_rich Low_complexity Low_complexity 1 55 0 236 267 99 10 chr4 90498345 90498446 -93790216 + MIR SINE MIR 88 197 -65 275 268 175 21 chr4 90498614 90498711 -93789951 - L2 LINE L2 -21 3251 3140 189 107 0 0 chr4 90499252 90499280 -93789382 + (T)n Simple_repeat Simple_repeat 1 28 0 1004 174 108 0 chr4 90499867 90500080 -93788582 + MER46A DNA MER2_type 1 236 0 2146 129 0 3 chr4 90500151 90500453 -93788209 + AluSx SINE Alu 1 301 -11 266 186 0 51 chr4 90500552 90500611 -93788051 - tRNA-Cys-TGC tRNA tRNA -19 56 1 22 0 0 0 chr4 90501317 90501339 -93787323 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr4 90503516 90503538 -93785124 + (T)n Simple_repeat Simple_repeat 1 22 0 2876 0 0 0 chr4 90503757 90504064 -93784598 - AluYa5 SINE Alu -4 307 1 33 25 0 0 chr4 90504738 90504778 -93783884 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr4 90506157 90506178 -93782484 + AT_rich Low_complexity Low_complexity 1 21 0 275 353 12 0 chr4 90506648 90506733 -93781929 - MIR SINE MIR -150 112 27 194 368 46 11 chr4 90506938 90507112 -93781550 - MIR SINE MIR -46 216 37 22 0 0 0 chr4 90508967 90508989 -93779673 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 90509051 90509081 -93779581 + AT_rich Low_complexity Low_complexity 1 30 0 304 271 136 29 chr4 90509770 90509910 -93778752 - MIR SINE MIR -26 236 82 2271 102 0 0 chr4 90511021 90511324 -93777338 - AluY SINE Alu -8 303 1 26 93 0 0 chr4 90511410 90511485 -93777177 + AT_rich Low_complexity Low_complexity 1 75 0 1968 129 7 0 chr4 90511824 90512131 -93776531 + AluSg SINE Alu 1 309 0 2336 67 3 0 chr4 90514216 90514541 -93774121 + AluSp SINE Alu 1 326 0 276 57 19 38 chr4 90515641 90515694 -93772968 + (TTTTC)n Simple_repeat Simple_repeat 3 54 0 2053 126 3 25 chr4 90515696 90516013 -93772649 - AluSx SINE Alu -2 310 1 251 253 69 23 chr4 90516352 90516439 -93772223 - L2 LINE L2 0 3272 3182 1048 250 67 67 chr4 90517351 90517799 -93770863 + LTR16A LTR ERVL 1 448 -2 324 275 0 0 chr4 90518427 90518507 -93770155 + MER20 DNA MER1_type 121 200 -19 1674 146 60 0 chr4 90518553 90518846 -93769816 - AluJb SINE Alu 0 309 1 1438 169 43 110 chr4 90519252 90519671 -93768991 - MLT1B LTR MaLR 0 396 1 1840 146 148 13 chr4 90520816 90521193 -93767469 - MSTA LTR MaLR 0 428 1 396 345 150 43 chr4 90523576 90524069 -93764593 + L3 LINE CR1 51 596 -981 21 0 0 0 chr4 90524520 90524541 -93764121 + AT_rich Low_complexity Low_complexity 1 21 0 1080 324 89 9 chr4 90524597 90525279 -93763383 - L2 LINE L2 -98 3215 2475 345 338 109 62 chr4 90525385 90525870 -93762792 - L2 LINE L2 -2424 890 383 269 321 31 37 chr4 90525885 90526047 -93762615 - L2 LINE L2 -3057 257 97 239 91 0 0 chr4 90526073 90526106 -93762556 + L2 LINE L2 3190 3222 -91 191 86 0 29 chr4 90526175 90526210 -93762452 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 1914 159 31 23 chr4 90527020 90527372 -93761290 - MLT1A1 LTR MaLR 0 365 11 2196 105 0 10 chr4 90528396 90528690 -93759972 - AluSx SINE Alu -21 291 1 423 331 14 99 chr4 90528954 90529368 -93759294 - L2 LINE L2 -376 2938 2560 2040 129 28 84 chr4 90529388 90529815 -93758847 - LTR57 LTR ERVL -7 404 2 268 310 101 19 chr4 90529911 90530069 -93758593 - L2 LINE L2 -1019 2295 2125 393 132 0 26 chr4 90530167 90530243 -93758419 + L1MB2 LINE L1 5872 5945 -226 2248 102 0 0 chr4 90530286 90530579 -93758083 + AluSx SINE Alu 1 293 -19 1214 143 40 13 chr4 90530580 90530804 -93757858 + L1MB2 LINE L1 5935 6164 -7 475 287 205 8 chr4 90530806 90531074 -93757588 - L2 LINE L2 -1365 1949 1629 40 0 0 0 chr4 90531873 90531913 -93756749 + AT_rich Low_complexity Low_complexity 1 40 0 399 268 40 31 chr4 90532268 90532496 -93756166 - L2 LINE L2 -195 3077 2848 222 278 69 0 chr4 90532553 90532625 -93756037 - L2 LINE L2 -567 2747 2671 1349 182 66 48 chr4 90532639 90532974 -93755688 - MER58B DNA MER1_type 0 341 1 319 300 22 0 chr4 90533601 90533691 -93754971 + MIR SINE MIR 40 131 -131 26 0 0 0 chr4 90535348 90535374 -93753288 + AT_rich Low_complexity Low_complexity 1 26 0 2277 109 0 6 chr4 90537918 90538230 -93750432 + AluSg SINE Alu 1 310 0 40 94 0 0 chr4 90538843 90538960 -93749702 + AT_rich Low_complexity Low_complexity 1 117 0 23 33 0 0 chr4 90539762 90539792 -93748870 + AT_rich Low_complexity Low_complexity 1 30 0 2449 73 0 0 chr4 90539943 90540243 -93748419 - AluSc SINE Alu -9 300 1 855 172 8 0 chr4 90540263 90540397 -93748265 - AluJo SINE Alu -177 135 1 546 234 42 48 chr4 90541016 90541183 -93747479 - MIR SINE MIR -13 249 84 201 241 51 25 chr4 90541180 90541259 -93747403 - L2 LINE L2 -84 3229 3149 * 421 282 120 45 chr4 90541680 90541946 -93746716 - L3 LINE CR1 -106 1471 1186 355 326 35 14 chr4 90542339 90542480 -93746182 - MIR SINE MIR -27 235 92 938 191 6 6 chr4 90542816 90542978 -93745684 - MER68 LTR ERV1 -1 561 400 618 94 0 0 chr4 90542981 90543066 -93745596 - AluS SINE Alu -227 85 1 289 252 84 37 chr4 90543378 90543485 -93745177 + L2 LINE L2 3202 3313 0 771 179 0 8 chr4 90543507 90543641 -93745021 + FLAM_C SINE Alu 1 133 0 360 301 77 56 chr4 90544644 90544840 -93743822 + MIR3 SINE MIR 6 205 -3 183 80 0 0 chr4 90545322 90545347 -93743315 + (T)n Simple_repeat Simple_repeat 1 25 0 2405 60 0 0 chr4 90545348 90545633 -93743029 + AluY SINE Alu 8 292 -19 1207 200 85 41 chr4 90545635 90545905 -93742757 - AluJo SINE Alu -30 282 1 1539 139 0 25 chr4 90546289 90546533 -93742129 + AluJb SINE Alu 56 293 -19 32 43 0 0 chr4 90546636 90546682 -93741980 + AT_rich Low_complexity Low_complexity 1 46 0 2165 99 0 43 chr4 90546758 90547081 -93741581 + AluY SINE Alu 1 309 -2 1086 98 7 0 chr4 90547520 90547663 -93740999 - AluSc SINE Alu -165 144 1 565 250 49 11 chr4 90547665 90547849 -93740813 - HAL1b LINE L1 -764 584 394 1037 248 130 31 chr4 90547933 90548209 -93740453 - HAL1b LINE L1 -686 662 415 351 96 0 0 chr4 90548209 90548261 -93740401 + (TG)n Simple_repeat Simple_repeat 2 53 0 1037 248 130 31 chr4 90548261 90548493 -93740169 - HAL1b LINE L1 -933 415 104 203 179 0 0 chr4 90548620 90548659 -93740003 + T-rich Low_complexity Low_complexity 1 39 0 2143 116 3 0 chr4 90549182 90549474 -93739188 - AluSx SINE Alu -19 293 1 2336 74 0 0 chr4 90549486 90549793 -93738869 - AluY SINE Alu 0 307 1 654 268 126 17 chr4 90549826 90550057 -93738605 + MIR SINE MIR 2 257 -5 32 43 0 0 chr4 90551115 90551161 -93737501 + AT_rich Low_complexity Low_complexity 1 46 0 2051 115 0 50 chr4 90551237 90551560 -93737102 + AluSc SINE Alu 1 307 -2 22 80 0 0 chr4 90552314 90552364 -93736298 + AT_rich Low_complexity Low_complexity 1 50 0 449 125 0 12 chr4 90553080 90553160 -93735502 + (TCCC)n Simple_repeat Simple_repeat 2 80 0 2143 89 0 4 chr4 90553160 90553430 -93735232 - AluSc SINE Alu -40 269 1 278 336 106 70 chr4 90553718 90554132 -93734530 + L2 LINE L2 2827 3255 -17 1511 179 3 30 chr4 90554490 90554787 -93733875 + AluJo SINE Alu 1 289 -23 365 289 155 64 chr4 90555147 90555521 -93733141 - L2 LINE L2 -340 2974 2567 2504 54 0 3 chr4 90555917 90556214 -93732448 - AluY SINE Alu -15 296 1 22 0 0 0 chr4 90556803 90556825 -93731837 + AT_rich Low_complexity Low_complexity 1 22 0 299 237 70 70 chr4 90556946 90557060 -93731602 + L3 LINE CR1 1441 1554 -23 1066 178 16 5 chr4 90558015 90558200 -93730462 + MER58A DNA MER1_type 27 213 -11 229 301 150 40 chr4 90558294 90558467 -93730195 + L2 LINE L2 3122 3313 0 398 262 133 17 chr4 90558507 90558707 -93729955 - MIR SINE MIR 0 262 40 23 0 0 0 chr4 90559270 90559293 -93729369 + AT_rich Low_complexity Low_complexity 1 23 0 226 237 0 0 chr4 90559367 90559426 -93729236 + T-rich Low_complexity Low_complexity 1 59 0 2023 123 48 0 chr4 90559530 90559823 -93728839 + AluSc SINE Alu 1 307 -2 2033 128 3 3 chr4 90560847 90561136 -93727526 - AluSx SINE Alu -23 289 1 1425 190 26 8 chr4 90561396 90561664 -93726998 - AluJo SINE Alu -39 273 1 1039 176 28 0 chr4 90562714 90562896 -93725766 - MER5A DNA MER1_type 0 189 3 580 247 46 17 chr4 90562919 90563093 -93725569 - MER5A DNA MER1_type -6 183 5 416 253 187 30 chr4 90563327 90563493 -93725169 - HAL1 LINE L1 -1909 598 407 2156 83 0 4 chr4 90563505 90563783 -93724879 - AluY SINE Alu -34 277 1 439 314 26 7 chr4 90563982 90564135 -93724527 - L1ME LINE L1 -481 5640 5485 1582 171 53 4 chr4 90564262 90564543 -93724119 + AluSx SINE Alu 1 295 -17 466 260 199 22 chr4 90564546 90564727 -93723935 + MIR SINE MIR 29 241 -21 359 304 15 29 chr4 90565219 90565567 -93723095 + CT-rich Low_complexity Low_complexity 1 342 0 1760 118 19 8 chr4 90566164 90566426 -93722236 - AluSx SINE Alu -42 270 6 590 231 114 90 chr4 90566967 90567399 -93721263 - HAL1b LINE L1 -1 1347 896 1529 171 10 56 chr4 90567399 90567703 -93720959 + AluJo SINE Alu 5 294 -18 590 231 114 90 chr4 90567703 90567849 -93720813 - HAL1b LINE L1 -452 896 755 356 339 12 58 chr4 90568011 90568051 -93720611 + L3 LINE CR1 1343 1383 -194 2207 106 3 3 chr4 90568051 90568352 -93720310 + AluSx SINE Alu 1 301 -11 356 339 12 58 chr4 90568352 90568482 -93720180 + L3 LINE CR1 1383 1505 -72 342 246 118 41 chr4 90568559 90568754 -93719908 - L1ME4a LINE L1 -6 6115 5906 * 6362 156 80 37 chr4 90568734 90569208 -93719454 + L1MA4 LINE L1 3992 4444 -1856 2073 132 24 0 chr4 90569208 90569496 -93719166 - AluSq SINE Alu -18 295 1 6362 156 80 37 chr4 90569496 90570385 -93718277 + L1MA4 LINE L1 4444 5294 -1006 1997 142 7 10 chr4 90570385 90570688 -93717974 + AluSx SINE Alu 1 302 -10 6362 156 80 37 chr4 90570688 90571527 -93717135 + L1MA4 LINE L1 5294 6300 0 239 298 268 26 chr4 90571795 90572023 -93716639 + L2 LINE L2 2008 2290 -1024 225 300 25 0 chr4 90572061 90572141 -93716521 + L2 LINE L2 3186 3267 -5 347 350 117 0 chr4 90572174 90572311 -93716351 + L2 LINE L2 3106 3258 -14 221 303 91 0 chr4 90572326 90572425 -93716237 + MIR SINE MIR 81 188 -74 360 93 0 19 chr4 90572485 90572539 -93716123 + Alu SINE Alu 244 296 -6 1331 213 131 52 chr4 90572581 90573046 -93715616 + MLT1D LTR MaLR 1 502 -3 522 210 112 45 chr4 90573063 90573287 -93715375 + L1MC5 LINE L1 7611 7849 -112 * 981 188 45 115 chr4 90573281 90573638 -93715024 - L1MC5 LINE L1 -911 7050 6719 1347 253 96 22 chr4 90573662 90574359 -93714303 - L2 LINE L2 0 3313 2555 953 78 124 0 chr4 90575942 90576071 -93712591 - AluY SINE Alu -166 145 1 1919 118 69 0 chr4 90576239 90576528 -93712134 - AluSq SINE Alu -4 309 1 747 137 24 95 chr4 90576533 90576701 -93711961 + MSTB2 LTR MaLR 302 457 0 248 296 87 0 chr4 90577021 90577136 -93711526 - L1M4 LINE L1 -3359 2787 2663 2167 98 0 38 chr4 90577188 90577504 -93711158 - AluSq SINE Alu -9 304 1 730 368 35 45 chr4 90577577 90577688 -93710974 + L2 LINE L2 2265 2376 -938 2334 95 3 0 chr4 90577688 90577993 -93710669 - AluY SINE Alu -5 306 1 730 368 35 45 chr4 90577993 90578416 -93710246 + L2 LINE L2 2376 2794 -520 296 174 76 87 chr4 90578441 90578533 -93710129 - MIR SINE MIR -79 183 93 1555 257 77 12 chr4 90578541 90579050 -93709612 - MLT2E LTR ERVL -17 611 1 280 183 42 56 chr4 90579050 90579121 -93709541 - MIR SINE MIR -167 95 26 352 310 163 47 chr4 90579142 90579529 -93709133 + L2 LINE L2 2804 3235 -37 28 0 0 0 chr4 90580525 90580553 -93708109 + AT_rich Low_complexity Low_complexity 1 28 0 867 259 78 8 chr4 90580566 90580809 -93707853 - MLT1F LTR MaLR -113 429 170 198 0 0 0 chr4 90580829 90580851 -93707811 + (T)n Simple_repeat Simple_repeat 1 22 0 355 298 0 29 chr4 90580851 90580955 -93707707 - MLT1F1 LTR MaLR -401 166 66 1774 81 8 16 chr4 90580955 90581203 -93707459 + AluSc SINE Alu 1 246 -63 518 62 0 0 chr4 90581230 90581294 -93707368 - Alu SINE Alu -15 297 234 358 169 0 15 chr4 90581296 90581361 -93707301 - MLT1F1 LTR MaLR -502 65 2 375 291 16 44 chr4 90581371 90581553 -93707109 - L1ME LINE L1 -466 5655 5479 614 298 6 28 chr4 90581555 90581736 -93706926 - MER91A DNA MER1_type -18 178 2 25 51 0 0 chr4 90581865 90581904 -93706758 + AT_rich Low_complexity Low_complexity 1 39 0 248 176 39 0 chr4 90584507 90584558 -93704104 + L2 LINE L2 3216 3268 -4 272 214 98 89 chr4 90584826 90584938 -93703724 - MER91C DNA MER1_type 0 140 28 200 182 0 0 chr4 90585366 90585399 -93703263 + (TGAG)n Simple_repeat Simple_repeat 1 33 0 750 85 55 12 chr4 90586049 90586213 -93702449 + CT-rich Low_complexity Low_complexity 2 172 0 4298 172 89 5 chr4 90586515 90587277 -93701385 + LTR1B LTR ERV1 1 826 0 733 260 56 69 chr4 90587355 90587763 -93700899 + MLT1I LTR MaLR 3 405 -4 192 407 41 35 chr4 90587920 90588065 -93700597 + L2 LINE L2 3125 3270 -2 1512 121 133 15 chr4 90588321 90588585 -93700077 - AluSc SINE Alu -14 295 1 312 213 85 32 chr4 90588670 90588764 -93699898 - L2 LINE L2 -1 3312 3214 1340 244 111 60 chr4 90588999 90589265 -93699397 + MER20B DNA MER1_type 56 307 -476 2042 152 0 0 chr4 90589265 90589562 -93699100 - AluSx SINE Alu -15 297 1 1340 244 111 60 chr4 90589562 90589962 -93698700 + MER20B DNA MER1_type 307 756 -27 401 286 53 15 chr4 90589963 90590096 -93698566 - HERV16 LTR ERVL -2464 3021 2884 2191 130 3 3 chr4 90590181 90590488 -93698174 - AluSx SINE Alu -5 307 1 409 260 30 10 chr4 90590560 90590660 -93698002 - HERV16 LTR ERVL -4332 664 563 1008 275 72 12 chr4 90591140 90591475 -93697187 - LTR16A LTR ERVL -6 444 90 222 333 13 13 chr4 90591720 90591798 -93696864 + MIR SINE MIR 20 97 -165 714 230 63 67 chr4 90591836 90591971 -93696691 - MIR SINE MIR -12 250 115 2014 154 0 0 chr4 90591971 90592276 -93696386 + AluSx SINE Alu 1 305 -7 714 230 63 67 chr4 90592276 90592379 -93696283 - MIR SINE MIR -147 115 13 549 228 11 19 chr4 90592702 90592877 -93695785 + L1ME1 LINE L1 6028 6177 -1 216 0 0 0 chr4 90593744 90593768 -93694894 + (T)n Simple_repeat Simple_repeat 1 24 0 2066 104 40 10 chr4 90593871 90594168 -93694494 - AluSg SINE Alu -4 306 1 388 299 110 24 chr4 90594369 90594533 -93694129 - MIR3 SINE MIR -26 182 5 352 297 52 52 chr4 90594569 90594724 -93693938 - L2 LINE L2 0 3313 3159 241 272 76 76 chr4 90595109 90595293 -93693369 + MIR3 SINE MIR 2 185 -23 2270 117 0 13 chr4 90595342 90595658 -93693004 - AluSx SINE Alu 0 312 1 653 216 70 42 chr4 90595661 90595874 -93692788 - L1PB4 LINE L1 -2 6154 5936 228 67 0 0 chr4 90596993 90597023 -93691639 + (TC)n Simple_repeat Simple_repeat 1 30 0 333 0 0 0 chr4 90597298 90597335 -93691327 + (CA)n Simple_repeat Simple_repeat 1 37 0 417 263 30 23 chr4 90597703 90597836 -93690826 - L2 LINE L2 0 3313 3180 377 244 180 23 chr4 90598162 90598369 -93690293 - L2 LINE L2 -297 3016 2764 2280 90 0 0 chr4 90598817 90599107 -93689555 - AluSg SINE Alu -16 294 5 1473 167 93 4 chr4 90600920 90601190 -93687472 - AluJo SINE Alu -18 294 1 190 362 95 9 chr4 90601195 90601311 -93687351 - MIR SINE MIR -117 145 20 242 0 0 0 chr4 90601311 90601337 -93687325 + L1PB2 LINE L1 5912 5937 -214 2123 101 3 11 chr4 90601337 90601678 -93686984 + AluSx SINE Alu 1 339 0 1252 165 30 13 chr4 90601678 90601914 -93686748 + L1PA16 LINE L1 5924 6163 -3 2506 82 0 0 chr4 90602314 90602620 -93686042 - AluSq SINE Alu -7 306 1 2113 111 3 39 chr4 90602687 90602993 -93685669 - AluSx SINE Alu -17 295 1 253 311 57 19 chr4 90603301 90603407 -93685255 - MIR3 SINE MIR -18 190 81 2135 109 26 3 chr4 90603529 90603831 -93684831 - AluSc SINE Alu 0 309 1 216 174 44 35 chr4 90605293 90605363 -93683299 - MIR SINE MIR -71 137 61 341 313 20 53 chr4 90605493 90605643 -93683019 + MIR SINE MIR 28 172 -90 283 181 0 42 chr4 90605849 90605921 -93682741 + LTR30 LTR ERV1 552 620 -102 207 0 0 0 chr4 90605934 90605957 -93682705 + (A)n Simple_repeat Simple_repeat 1 23 0 1003 165 24 53 chr4 90605957 90606163 -93682499 - AluJo SINE Alu -31 281 82 2003 108 0 89 chr4 90607427 90607751 -93680911 - AluSx SINE Alu -17 295 1 311 265 59 53 chr4 90607759 90607929 -93680733 + L1M4 LINE L1 4770 4940 -1206 2156 101 10 7 chr4 90608243 90608541 -93680121 + AluSq SINE Alu 1 299 -14 655 157 37 0 chr4 90608696 90608804 -93679858 - FRAM SINE Alu -25 151 40 618 252 31 19 chr4 90609285 90609444 -93679218 - MIR SINE MIR -29 233 73 233 149 43 0 chr4 90609548 90609595 -93679067 + MADE1 DNA Mariner 31 79 -1 1780 139 64 13 chr4 90609754 90610129 -93678533 + Tigger2 DNA MER2_type 1 394 -2324 202 323 31 0 chr4 90610131 90610196 -93678466 - MIR SINE MIR -123 139 73 1901 178 22 3 chr4 90610310 90610670 -93677992 + Tigger2 DNA MER2_type 391 757 -1961 916 160 98 10 chr4 90610720 90610914 -93677748 + Tigger2 DNA MER2_type 2461 2671 -47 5789 62 37 3 chr4 90611733 90612487 -93676175 + LTR17 LTR ERV1 1 780 0 2180 116 7 0 chr4 90612618 90612912 -93675750 - AluSq SINE Alu -15 298 3 1828 177 64 20 chr4 90613101 90613491 -93675171 + MLT2D LTR ERVL 1 407 -7 2385 79 3 0 chr4 90613554 90613858 -93674804 - AluY SINE Alu -6 305 1 294 272 88 65 chr4 90614394 90614561 -93674101 - L1M4 LINE L1 -2715 3431 3269 2198 126 0 0 chr4 90614561 90614862 -93673800 - AluSx SINE Alu -11 301 1 294 272 88 65 chr4 90614862 90615748 -93672914 - L1M4 LINE L1 -2877 3269 2354 256 235 73 15 chr4 90616214 90616282 -93672380 - MIR SINE MIR -174 88 17 180 0 0 0 chr4 90617004 90617024 -93671638 + (T)n Simple_repeat Simple_repeat 1 20 0 316 282 0 13 chr4 90617508 90617586 -93671076 + MIR SINE MIR 21 97 -111 2179 133 3 0 chr4 90617764 90618065 -93670597 - AluSq SINE Alu -11 302 1 737 152 8 16 chr4 90620403 90620528 -93668134 - AluJb SINE Alu -15 297 174 2120 223 109 32 chr4 90621058 90621606 -93667056 - L1MC4a LINE L1 -1 7807 7190 711 204 0 0 chr4 90621606 90621738 -93666924 + FLAM_A SINE Alu 1 132 -1 2120 223 109 32 chr4 90621738 90621903 -93666759 - L1MC4a LINE L1 -618 7190 7039 2320 121 0 0 chr4 90621904 90622211 -93666451 + AluSx SINE Alu 1 307 -5 781 171 31 0 chr4 90622225 90622354 -93666308 + AluJ SINE Alu 1 133 -169 224 182 0 18 chr4 90622360 90622415 -93666247 + G-rich Low_complexity Low_complexity 2 55 0 1091 147 0 6 chr4 90622421 90622591 -93666071 + AluJ SINE Alu 138 306 -6 2164 92 10 0 chr4 90622814 90623106 -93665556 + AluSg SINE Alu 1 295 -15 183 362 67 0 chr4 90623701 90623806 -93664856 + MIR SINE MIR 136 247 -15 283 289 72 10 chr4 90623865 90623962 -93664700 + MIR3 SINE MIR 102 204 -4 4089 15 2 0 chr4 90624121 90624590 -93664072 - L1PA2 LINE L1 -4 6151 5682 318 50 0 0 chr4 90625230 90625270 -93663392 + (TG)n Simple_repeat Simple_repeat 2 41 0 433 348 44 19 chr4 90625620 90625936 -93662726 + L1MEd LINE L1 450 773 -5346 2053 151 3 0 chr4 90626080 90626385 -93662277 - AluSq SINE Alu -7 306 1 23 0 0 0 chr4 90626468 90626491 -93662171 + AT_rich Low_complexity Low_complexity 1 23 0 2700 164 31 21 chr4 90627821 90628679 -93659983 + L1MA8 LINE L1 4821 5680 -611 1563 168 9 35 chr4 90628679 90628845 -93659817 + L1MA8 LINE L1 5958 6119 -172 2384 89 0 0 chr4 90628845 90629136 -93659526 + AluSc SINE Alu 1 291 -18 1563 168 9 35 chr4 90629136 90629302 -93659360 + L1MA8 LINE L1 6119 6288 -3 1538 78 18 0 chr4 90629830 90630049 -93658613 + L1PA13 LINE L1 5940 6162 -1 2175 96 7 3 chr4 90630050 90630332 -93658330 + AluSx SINE Alu 1 283 -29 628 243 143 0 chr4 90630912 90631101 -93657561 + MIR SINE MIR 47 262 0 1812 122 83 0 chr4 90631448 90631726 -93656936 - AluSx SINE Alu -11 301 1 31 0 0 0 chr4 90631997 90632028 -93656634 + AT_rich Low_complexity Low_complexity 1 31 0 221 288 0 45 chr4 90632191 90632257 -93656405 - L2 LINE L2 -6 3307 3245 2519 77 0 0 chr4 90632266 90632579 -93656083 + AluSq SINE Alu 1 313 0 2399 82 0 10 chr4 90634193 90634498 -93654164 - AluY SINE Alu -9 302 1 1434 158 37 26 chr4 90634498 90634770 -93653892 - AluJo SINE Alu -1 311 37 27 29 0 0 chr4 90635065 90635099 -93653563 + AT_rich Low_complexity Low_complexity 1 34 0 2014 159 0 0 chr4 90635101 90635397 -93653265 + AluSx SINE Alu 1 296 -16 29 0 0 0 chr4 90635478 90635507 -93653155 + AT_rich Low_complexity Low_complexity 1 29 0 303 275 107 54 chr4 90635554 90635703 -93652959 - L3 LINE CR1 -9 1568 1412 2181 122 0 7 chr4 90636088 90636392 -93652270 + AluSx SINE Alu 1 302 -10 613 268 82 8 chr4 90636412 90636655 -93652007 + MIR SINE MIR 2 262 0 541 178 89 0 chr4 90637380 90637481 -93651181 - FLAM_A SINE Alu -32 110 1 352 356 137 12 chr4 90637568 90638026 -93650636 + L2 LINE L2 2572 3090 -182 22 0 0 0 chr4 90638354 90638376 -93650286 + AT_rich Low_complexity Low_complexity 1 22 0 200 227 0 0 chr4 90640910 90640954 -93647708 + (TA)n Simple_repeat Simple_repeat 1 44 0 228 192 0 39 chr4 90641100 90641152 -93647510 + (TTCA)n Simple_repeat Simple_repeat 2 51 0 418 288 101 118 chr4 90641155 90641579 -93647083 - L2 LINE L2 -42 3230 2814 1852 84 8 0 chr4 90642113 90642350 -93646312 + AluSp SINE Alu 60 298 -15 24 0 0 0 chr4 90642496 90642520 -93646142 + AT_rich Low_complexity Low_complexity 1 24 0 277 356 0 0 chr4 90643036 90643123 -93645539 - MIR3 SINE MIR -3 205 119 365 239 128 26 chr4 90643795 90644029 -93644633 - L1ME4a LINE L1 0 6121 5864 241 321 0 0 chr4 90644121 90644174 -93644488 + L2 LINE L2 3205 3257 -15 21 0 0 0 chr4 90645203 90645224 -93643438 + AT_rich Low_complexity Low_complexity 1 21 0 203 51 26 51 chr4 90645347 90645386 -93643276 + (TTTTA)n Simple_repeat Simple_repeat 4 41 0 595 354 62 21 chr4 90646423 90646663 -93641999 - MIR SINE MIR -1 261 12 446 321 34 87 chr4 90646790 90646837 -93641825 - MIR SINE MIR 0 262 214 2163 96 0 55 chr4 90646837 90647149 -93641513 - AluY SINE Alu -16 295 1 446 321 34 87 chr4 90647149 90647230 -93641432 - MIR SINE MIR -48 214 130 3502 93 10 2 chr4 90647230 90647734 -93640928 - L1PB1 LINE L1 -1 6150 5643 446 321 34 87 chr4 90647734 90647869 -93640793 - MIR SINE MIR -132 130 12 346 212 0 81 chr4 90647853 90647952 -93640710 - L2 LINE L2 0 3313 3223 * 226 239 33 33 chr4 90647964 90648056 -93640606 + L1ME4a LINE L1 5963 6054 -67 1998 153 79 14 chr4 90648464 90648830 -93639832 + MLT1B LTR MaLR 1 390 0 803 269 14 72 chr4 90649099 90649378 -93639284 + L2 LINE L2 1141 1403 -1911 4000 220 25 18 chr4 90649390 90650605 -93638057 + L1MEc LINE L1 2173 3355 -2860 1901 122 72 0 chr4 90650628 90650907 -93637755 - AluSx SINE Alu -13 299 1 1491 201 139 39 chr4 90650911 90651269 -93637393 - MLT1E1 LTR MaLR -71 583 166 2305 115 0 6 chr4 90651269 90651583 -93637079 - AluSx SINE Alu 0 312 1 1491 201 139 39 chr4 90651583 90651692 -93636970 - MLT1E1 LTR MaLR -488 166 69 490 306 61 50 chr4 90651692 90651989 -93636673 + L2 LINE L2 3014 3313 0 221 283 85 38 chr4 90652859 90652965 -93635697 + MIR SINE MIR 81 191 -71 22 0 0 0 chr4 90655032 90655054 -93633608 + AT_rich Low_complexity Low_complexity 1 22 0 269 334 79 46 chr4 90655463 90655706 -93632956 + MIR3 SINE MIR 3 257 -5 1217 112 0 0 chr4 90655917 90656095 -93632567 + L1MB1 LINE L1 5990 6167 -1 287 255 57 19 chr4 90658370 90658527 -93630135 - L1ME4a LINE L1 -12 6109 5947 197 128 50 57 chr4 90658834 90658935 -93629727 + (TTATA)n Simple_repeat Simple_repeat 2 103 -38 2479 75 0 0 chr4 90658935 90659241 -93629421 - AluY SINE Alu -5 306 1 197 128 50 57 chr4 90659241 90659280 -93629382 + (TTATA)n Simple_repeat Simple_repeat 103 141 0 2004 111 38 0 chr4 90660015 90660303 -93628359 - AluSp SINE Alu -14 299 1 284 62 0 21 chr4 90661197 90661245 -93627417 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 945 312 79 63 chr4 90661462 90661793 -93626869 + L2 LINE L2 2371 2695 -618 456 19 0 0 chr4 90661793 90661846 -93626816 + (TG)n Simple_repeat Simple_repeat 2 54 0 2380 60 0 4 chr4 90661853 90662134 -93626528 - AluY SINE Alu -31 280 1 945 312 79 63 chr4 90662134 90662207 -93626455 + L2 LINE L2 2700 2770 -543 2216 91 3 7 chr4 90662207 90662504 -93626158 - AluSx SINE Alu -16 296 1 945 312 79 63 chr4 90662504 90663011 -93625651 + L2 LINE L2 2770 3310 -3 1369 128 0 47 chr4 90663180 90663414 -93625248 + AluSg/x SINE Alu 84 306 -6 1467 165 36 42 chr4 90663418 90663727 -93624935 + AluJo SINE Alu 1 307 -5 2340 84 7 3 chr4 90664126 90664425 -93624237 - AluSc SINE Alu -9 300 1 22 35 0 0 chr4 90664953 90664982 -93623680 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr4 90665193 90665222 -93623440 + AT_rich Low_complexity Low_complexity 1 29 0 22 70 0 0 chr4 90666419 90666462 -93622200 + AT_rich Low_complexity Low_complexity 1 43 0 2321 92 0 0 chr4 90666941 90667233 -93621429 + AluSx SINE Alu 1 292 -20 2303 98 3 7 chr4 90667555 90667860 -93620802 + AluSc SINE Alu 1 304 -5 1947 146 33 9 chr4 90669654 90669989 -93618673 - MER2 DNA MER2_type 0 344 2 972 174 32 73 chr4 90671102 90671320 -93617342 - L1PB4 LINE L1 -20 6136 5928 * 1799 134 11 3 chr4 90671297 90671581 -93617081 - L1PA15 LINE L1 -85 6080 5795 1576 141 110 0 chr4 90671594 90671748 -93616914 - AluSx SINE Alu -2 310 174 285 29 0 0 chr4 90671748 90671782 -93616880 + (TG)n Simple_repeat Simple_repeat 2 35 0 1576 141 110 0 chr4 90671782 90671890 -93616772 - AluSx SINE Alu -138 174 19 426 307 120 51 chr4 90671941 90672316 -93616346 - MLT1L LTR MaLR -10 605 205 830 202 0 33 chr4 90672345 90672528 -93616134 - MER5B DNA MER1_type 0 178 2 745 309 66 47 chr4 90672620 90672940 -93615722 - MLT1K LTR MaLR -230 358 33 202 94 0 0 chr4 90672960 90672992 -93615670 + L2 LINE L2 3282 3313 0 1665 175 36 26 chr4 90673467 90673776 -93614886 + AluJb SINE Alu 1 312 0 2306 91 7 10 chr4 90673978 90674287 -93614375 + AluSp SINE Alu 1 308 -5 200 238 0 0 chr4 90675860 90675902 -93612760 + T-rich Low_complexity Low_complexity 1 42 0 292 207 90 54 chr4 90676540 90676651 -93612011 - LTR41 LTR ERVL -7 766 652 285 220 173 60 chr4 90677058 90677226 -93611436 - LTR41 LTR ERVL -585 188 2 226 312 119 0 chr4 90677848 90677957 -93610705 - MIR SINE MIR -89 173 52 21 36 0 0 chr4 90679189 90679217 -93609445 + AT_rich Low_complexity Low_complexity 1 28 0 325 336 25 72 chr4 90680953 90681271 -93607391 + L2 LINE L2 2967 3269 -3 192 299 49 69 chr4 90681361 90681505 -93607157 - MIR3 SINE MIR -10 198 58 459 0 0 0 chr4 90681863 90681914 -93606748 + (TG)n Simple_repeat Simple_repeat 2 52 0 746 270 198 26 chr4 90682611 90683236 -93605426 - L2 LINE L2 -3 3310 2575 294 222 32 0 chr4 90683782 90683845 -93604817 + L2 LINE L2 3195 3259 -13 567 305 140 7 chr4 90684586 90684871 -93603791 + LTR33 LTR ERVL 1 323 -198 211 133 0 0 chr4 90685287 90685317 -93603345 - L2 LINE L2 -42 3230 3201 853 227 76 13 chr4 90686310 90686535 -93602127 + MIR SINE MIR 2 240 -22 33 0 0 0 chr4 90687111 90687144 -93601518 + AT_rich Low_complexity Low_complexity 1 33 0 181 299 181 8 chr4 90687369 90687496 -93601166 + L3 LINE CR1 1403 1551 -26 24 0 0 0 chr4 90688359 90688383 -93600279 + AT_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr4 90688810 90688830 -93599832 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2344 88 3 0 chr4 90689778 90690075 -93598587 + AluSq SINE Alu 1 298 -15 180 0 0 0 chr4 90691328 90691348 -93597314 + (A)n Simple_repeat Simple_repeat 1 20 0 222 177 0 65 chr4 90691652 90691714 -93596948 - MIR SINE MIR -102 160 103 23 33 0 0 chr4 90692928 90692958 -93595704 + AT_rich Low_complexity Low_complexity 1 30 0 365 235 169 9 chr4 90695507 90695669 -93592993 + MIR SINE MIR 28 262 0 2269 101 3 0 chr4 90696248 90696556 -93592106 + AluY SINE Alu 1 309 -2 322 260 62 34 chr4 90697207 90697353 -93591309 - L1ME4a LINE L1 -9 6112 5963 252 381 62 0 chr4 90698007 90698167 -93590495 - MIR3 SINE MIR -20 188 19 2385 88 0 0 chr4 90698186 90698480 -93590182 + AluSq SINE Alu 1 294 -19 667 268 125 60 chr4 90698747 90699855 -93588807 - L1ME4a LINE L1 -227 5943 4757 529 246 75 96 chr4 90699842 90699994 -93588668 - L1ME4a LINE L1 -2001 4145 3991 * 2162 116 0 10 chr4 90699994 90700296 -93588366 + AluSx SINE Alu 4 302 -10 529 246 75 96 chr4 90700296 90700583 -93588079 - L1ME4a LINE L1 -2155 3991 3715 3529 204 18 21 chr4 90700606 90701126 -93587536 - L1MB7 LINE L1 -171 6824 6304 2473 73 0 0 chr4 90701126 90701428 -93587234 - AluY SINE Alu -9 302 1 3529 204 18 21 chr4 90701428 90701851 -93586811 - L1MB7 LINE L1 -691 6304 5882 2241 94 10 7 chr4 90701851 90702150 -93586512 - AluSg SINE Alu -10 300 1 3529 204 18 21 chr4 90702150 90702178 -93586484 - L1MB7 LINE L1 -1113 5882 5855 * 7534 210 51 34 chr4 90702174 90702778 -93585884 - L1MB7 LINE L1 -4726 2233 1640 1715 165 4 4 chr4 90702778 90703045 -93585617 - AluJb SINE Alu -45 267 1 7534 210 51 34 chr4 90703045 90704648 -93584014 - L1MB7 LINE L1 -5319 1640 8 821 163 0 15 chr4 90704962 90705097 -93583565 - FLAM_C SINE Alu 0 133 1 1474 199 23 52 chr4 90706810 90706970 -93581692 - AluJo SINE Alu -14 298 135 210 37 0 0 chr4 90706970 90706997 -93581665 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2253 80 0 21 chr4 90706997 90707284 -93581378 - AluY SINE Alu -30 281 1 1474 199 23 52 chr4 90707284 90707429 -93581233 - AluJo SINE Alu -175 137 1 705 213 66 108 chr4 90707838 90708233 -93580429 + MER39 LTR ERV1 325 579 -6 264 299 165 0 chr4 90708246 90708373 -93580289 + ERVL LTR ERVL 4456 4603 -882 748 339 41 32 chr4 90708480 90709052 -93579610 + ERVL LTR ERVL 4746 5326 -159 3983 115 53 3 chr4 90709574 90710201 -93578461 - HSMAR1 DNA Mariner -629 658 1 2422 149 25 30 chr4 90710251 90710687 -93577975 + Tigger2a DNA MER2_type 1 434 0 230 31 0 0 chr4 90711166 90711198 -93577464 - L1MC2 LINE L1 -16 6328 6297 2195 112 7 10 chr4 90711422 90711726 -93576936 - AluSx SINE Alu -9 303 1 22 80 0 0 chr4 90711989 90712039 -93576623 + AT_rich Low_complexity Low_complexity 1 50 0 210 71 0 0 chr4 90712912 90712940 -93575722 + (CA)n Simple_repeat Simple_repeat 2 29 0 13816 27 0 0 chr4 90713457 90715857 -93572805 - L1PA3 LINE L1 0 6155 3756 2197 98 4 0 chr4 90715917 90716194 -93572468 - AluSx SINE Alu -24 288 11 2152 128 0 10 chr4 90716401 90716705 -93571957 - AluSx SINE Alu -11 301 1 2585 88 11 6 chr4 90717418 90717771 -93570891 - THE1A LTR MaLR 0 355 1 216 360 0 10 chr4 90718162 90718262 -93570400 - MER5B DNA MER1_type -78 100 2 300 333 40 10 chr4 90718541 90718640 -93570022 - MIR SINE MIR -146 116 15 2224 94 3 7 chr4 90719744 90720042 -93568620 - AluSc SINE Alu -12 297 1 2167 136 3 0 chr4 90720122 90720430 -93568232 - AluSx SINE Alu -3 309 1 180 0 0 0 chr4 90720888 90720908 -93567754 + (T)n Simple_repeat Simple_repeat 1 20 0 262 288 12 43 chr4 90721018 90721170 -93567492 + MIR SINE MIR 44 143 -65 185 311 0 0 chr4 90721412 90721473 -93567189 - L2 LINE L2 -217 3055 2995 243 318 68 62 chr4 90721972 90722148 -93566514 - MIR SINE MIR -34 228 52 2444 85 0 0 chr4 90724310 90724615 -93564047 - AluY SINE Alu -6 305 1 240 250 0 60 chr4 90724765 90724849 -93563813 - MER103 DNA DNA -47 119 41 180 0 0 0 chr4 90725028 90725048 -93563614 + (T)n Simple_repeat Simple_repeat 1 20 0 233 283 61 30 chr4 90726898 90726997 -93561665 + MIR SINE MIR 124 225 -37 696 193 19 0 chr4 90727144 90727305 -93561357 + MER53 DNA DNA 23 186 -3 25 65 0 0 chr4 90727365 90727411 -93561251 + AT_rich Low_complexity Low_complexity 1 46 0 24 0 0 0 chr4 90727436 90727460 -93561202 + AT_rich Low_complexity Low_complexity 1 24 0 1690 176 11 4 chr4 90727541 90727819 -93560843 - AluSx SINE Alu -20 292 13 1894 144 3 10 chr4 90728133 90728425 -93560237 - AluSx SINE Alu -22 290 1 253 313 38 19 chr4 90728841 90729052 -93559610 - L1ME LINE L1 -303 5818 5604 2158 118 0 0 chr4 90729213 90729501 -93559161 + AluSg SINE Alu 1 288 -22 201 138 0 0 chr4 90731334 90731363 -93557299 + (TG)n Simple_repeat Simple_repeat 2 30 0 698 270 85 35 chr4 90731598 90731917 -93556745 - MLT1J2 LTR MaLR -64 386 52 216 233 0 0 chr4 90732547 90732590 -93556072 - L2 LINE L2 -2 3311 3269 688 203 46 0 chr4 90837144 90837297 -93451365 - MER5B DNA MER1_type -18 160 1 1921 148 17 7 chr4 90838518 90838816 -93449846 + AluJo SINE Alu 1 301 -11 624 314 78 15 chr4 90839782 90840053 -93448609 - L3b LINE CR1 -176 1407 1120 1535 172 10 17 chr4 90841357 90841647 -93447015 + AluSx SINE Alu 1 288 -24 202 300 14 14 chr4 90843388 90843458 -93445204 + GA-rich Low_complexity Low_complexity 2 71 0 238 248 159 0 chr4 90843481 90843626 -93445036 + L1MEd LINE L1 715 882 -5237 497 152 133 57 chr4 90844085 90844204 -93444458 - MLT1E2 LTR MaLR -444 182 47 1923 160 0 3 chr4 90844204 90844498 -93444164 + AluJb SINE Alu 3 295 -17 497 152 133 57 chr4 90844498 90844536 -93444126 - MLT1E2 LTR MaLR -579 47 13 27 73 0 0 chr4 90844536 90844591 -93444071 + AT_rich Low_complexity Low_complexity 1 55 0 356 40 20 0 chr4 90845306 90845356 -93443306 + (CA)n Simple_repeat Simple_repeat 2 52 0 453 201 151 78 chr4 90845777 90845956 -93442706 + MIR SINE MIR 36 227 -35 305 254 0 0 chr4 90845954 90846009 -93442653 - MIR SINE MIR -197 65 11 * 181 276 123 41 chr4 90846105 90846275 -93442387 - L2 LINE L2 -12 3301 3118 513 331 30 0 chr4 90850209 90850375 -93438287 - MIR3 SINE MIR -35 173 3 6700 25 6 8 chr4 90853535 90854372 -93434290 - L1PA3 LINE L1 0 6155 5321 3442 34 0 0 chr4 90854373 90854816 -93433846 + L1PA3 LINE L1 4873 5315 -831 838 51 0 8 chr4 90855643 90855760 -93432902 + L1PA4 LINE L1 6039 6154 -1 2076 117 3 13 chr4 90856182 90856480 -93432182 - AluSx SINE Alu -9 303 9 185 259 74 37 chr4 90856726 90856807 -93431855 + L2 LINE L2 2312 2395 -919 341 169 59 37 chr4 90857832 90857968 -93430694 + (TATAA)n Simple_repeat Simple_repeat 2 140 0 232 285 106 19 chr4 90859264 90859381 -93429281 - MIR SINE MIR -63 145 22 6943 62 13 25 chr4 90859434 90860033 -93428629 + L1PA7 LINE L1 4883 5488 -666 2205 105 3 7 chr4 90860033 90860338 -93428324 + AluSq SINE Alu 1 304 -9 6943 62 13 25 chr4 90860338 90861015 -93427647 + L1PA7 LINE L1 5488 6152 -2 304 295 63 38 chr4 90861496 90861664 -93426998 + MIR SINE MIR 10 193 -15 488 307 18 24 chr4 90862189 90862355 -93426307 - MER91B DNA MER1_type -6 184 20 200 333 77 0 chr4 90862403 90862481 -93426181 + MIR3 SINE MIR 83 166 -42 21 36 0 0 chr4 90862659 90862687 -93425975 + AT_rich Low_complexity Low_complexity 1 28 0 1922 132 10 35 chr4 90862695 90863006 -93425656 + AluJo SINE Alu 1 303 -9 346 294 28 39 chr4 90863195 90863382 -93425280 - MER20B DNA MER1_type -29 190 8 494 236 151 0 chr4 90863715 90863900 -93424762 - MIR SINE MIR -12 250 39 47 0 0 0 chr4 90864484 90864531 -93424131 + AT_rich Low_complexity Low_complexity 1 47 0 28 0 0 0 chr4 90864541 90864569 -93424093 + AT_rich Low_complexity Low_complexity 1 28 0 279 281 178 66 chr4 90864676 90864789 -93423873 + L2 LINE L2 2651 2750 -563 2022 123 0 0 chr4 90864789 90865066 -93423596 + AluSx SINE Alu 1 277 -35 279 281 178 66 chr4 90865066 90865423 -93423239 + L2 LINE L2 2750 3184 -129 317 194 0 30 chr4 90869113 90869180 -93419482 + L2 LINE L2 3182 3246 -67 309 339 8 23 chr4 90871147 90871277 -93417385 - L1ME4a LINE L1 -264 5857 5730 772 201 41 6 chr4 90872025 90872194 -93416468 + MER5A DNA MER1_type 15 189 0 369 291 90 36 chr4 90874928 90875110 -93413552 - MIR SINE MIR -62 146 2 181 231 19 19 chr4 90876267 90876319 -93412343 - L2 LINE L2 -2910 404 353 297 319 17 17 chr4 90878021 90878140 -93410522 + MIR SINE MIR 72 190 -72 1379 259 22 14 chr4 90879667 90880030 -93408632 - LTR40b LTR ERVL -7 455 90 739 317 100 85 chr4 90880222 90881336 -93407326 + L3 LINE CR1 444 1573 -4 372 147 21 32 chr4 90882665 90882736 -93405926 + (TA)n Simple_repeat Simple_repeat 1 72 -22 2221 102 0 0 chr4 90882736 90883021 -93405641 + AluSg SINE Alu 11 295 -15 372 147 21 32 chr4 90883021 90883044 -93405618 + (TA)n Simple_repeat Simple_repeat 72 94 0 235 311 107 39 chr4 90884239 90884342 -93404320 - L2 LINE L2 -1 3271 3162 711 244 37 81 chr4 90884420 90884691 -93403971 + MER102a DNA MER1_type 72 330 0 1604 177 22 0 chr4 90885261 90885532 -93403130 + AluSx SINE Alu 1 277 -35 197 32 0 32 chr4 90885538 90885569 -93403093 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 207 292 112 68 chr4 90886939 90887100 -93401562 - L2 LINE L2 -181 3091 2924 2343 91 0 3 chr4 90887121 90887418 -93401244 + AluY SINE Alu 1 296 -15 193 323 48 16 chr4 90887481 90887605 -93401057 - L2 LINE L2 -509 2805 2678 1624 166 75 66 chr4 90887820 90888182 -93400480 - MLT1A1 LTR MaLR 0 365 1 722 261 80 9 chr4 90888383 90888609 -93400053 - MIR SINE MIR 0 262 21 396 306 70 27 chr4 90888891 90889077 -93399585 - L2 LINE L2 -639 2675 2482 23 68 0 0 chr4 90889381 90889425 -93399237 + AT_rich Low_complexity Low_complexity 1 44 0 476 291 73 0 chr4 90889950 90890115 -93398547 - MER5B DNA MER1_type 0 178 2 245 370 7 14 chr4 90890548 90890686 -93397976 + L2 LINE L2 768 904 -2410 2297 92 0 10 chr4 90890734 90891039 -93397623 + AluSx SINE Alu 3 304 -8 399 121 57 7 chr4 90891866 90892007 -93396655 + (TA)n Simple_repeat Simple_repeat 2 149 0 522 99 74 0 chr4 90892024 90892186 -93396476 + (TA)n Simple_repeat Simple_repeat 2 175 0 1726 232 52 52 chr4 90894054 90894559 -93394103 + MLT1D LTR MaLR 1 505 0 261 284 14 0 chr4 90895930 90896004 -93392658 + GA-rich Low_complexity Low_complexity 2 76 0 410 221 0 58 chr4 90896142 90896332 -93392330 + GA-rich Low_complexity Low_complexity 1 179 0 437 210 8 47 chr4 90896351 90896719 -93391943 + GA-rich Low_complexity Low_complexity 1 353 0 301 360 6 17 chr4 90896725 90896900 -93391762 + G-rich Low_complexity Low_complexity 5 177 0 * 434 218 9 59 chr4 90896773 90897329 -93391333 + GA-rich Low_complexity Low_complexity 1 528 0 1489 173 34 8 chr4 90898278 90898400 -93390262 + AluJo SINE Alu 1 118 -194 7874 40 3 0 chr4 90898400 90899439 -93389223 - L1PA5 LINE L1 -7 6147 5107 1489 173 34 8 chr4 90899439 90899582 -93389080 + AluJo SINE Alu 118 273 -39 210 290 80 74 chr4 90899967 90900129 -93388533 + L2 LINE L2 3107 3269 -3 23 33 0 0 chr4 90900830 90900860 -93387802 + AT_rich Low_complexity Low_complexity 1 30 0 180 39 0 39 chr4 90903460 90903486 -93385176 + L3 LINE CR1 945 969 -608 508 311 77 18 chr4 90904940 90905162 -93383500 - MIR SINE MIR -20 242 8 805 252 51 5 chr4 90905556 90905770 -93382892 + MIR SINE MIR 5 228 -34 21 0 0 0 chr4 90906178 90906199 -93382463 + AT_rich Low_complexity Low_complexity 1 21 0 381 248 70 51 chr4 90908655 90908812 -93379850 + MIR SINE MIR 93 252 -10 2327 102 3 0 chr4 90909129 90909432 -93379230 - AluSx SINE Alu -5 307 4 24 0 0 0 chr4 90909552 90909576 -93379086 + AT_rich Low_complexity Low_complexity 1 24 0 1590 174 0 29 chr4 90910888 90911164 -93377498 + AluJo SINE Alu 1 268 -44 43365 38 25 3 chr4 90911640 90917652 -93371010 + L1PA5 LINE L1 14 6154 0 534 325 30 0 chr4 90920816 90920982 -93367680 + MIR3 SINE MIR 3 173 -35 708 196 46 0 chr4 90926540 90926693 -93361969 - MER5B DNA MER1_type -18 160 1 1908 155 16 7 chr4 90927914 90928253 -93360409 + AluJo SINE Alu 1 468 -72 817 81 8 8 chr4 90928253 90928377 -93360285 + (GGGA)n Simple_repeat Simple_repeat 1 124 0 1908 155 16 7 chr4 90928377 90928451 -93360211 + AluJo SINE Alu 468 540 0 195 259 203 61 chr4 90928460 90928657 -93360005 - MIR SINE MIR -9 253 29 235 62 83 0 chr4 90929374 90929422 -93359240 + T-rich Low_complexity Low_complexity 4 55 0 204 324 81 40 chr4 90929457 90929605 -93359057 + L2 LINE L2 1045 1198 -2116 287 327 18 18 chr4 90929636 90929749 -93358913 - MIR SINE MIR -27 235 123 231 88 0 0 chr4 90929847 90929881 -93358781 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 280 252 54 45 chr4 90929974 90930085 -93358577 - MIR SINE MIR -146 116 5 464 330 63 11 chr4 90930093 90930363 -93358299 + L2 LINE L2 1229 1512 -1802 297 0 0 0 chr4 90930378 90930411 -93358251 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 234 156 0 0 chr4 90931235 90931280 -93357382 + (TA)n Simple_repeat Simple_repeat 1 45 0 288 0 0 0 chr4 90933377 90933409 -93355253 + (A)n Simple_repeat Simple_repeat 1 32 0 1764 163 33 3 chr4 90935017 90935318 -93353344 - AluSx SINE Alu -2 310 1 219 69 0 0 chr4 90936253 90936282 -93352380 + (TTA)n Simple_repeat Simple_repeat 2 30 0 540 302 26 5 chr4 90937910 90938102 -93350560 - MIR SINE MIR -15 247 52 624 214 0 23 chr4 90938411 90938542 -93350120 - FLAM_C SINE Alu 0 143 16 395 283 133 0 chr4 90938902 90939082 -93349580 - MIR SINE MIR 0 262 59 767 174 0 23 chr4 90940345 90940477 -93348185 + FLAM_A SINE Alu 11 139 -3 193 235 29 44 chr4 90941051 90941119 -93347543 + MIR SINE MIR 178 244 -18 180 193 70 18 chr4 90944216 90944273 -93344389 + L2 LINE L2 99 158 -3156 22 0 0 0 chr4 90944384 90944406 -93344256 + AT_rich Low_complexity Low_complexity 1 22 0 1981 140 0 14 chr4 90944406 90944698 -93343964 + AluJb SINE Alu 1 288 -24 451 118 71 12 chr4 90945543 90945628 -93343034 - MER97c DNA MER1_type? -912 178 89 252 235 0 37 chr4 90946279 90946360 -93342302 + A-rich Low_complexity Low_complexity 3 80 0 248 275 108 17 chr4 90947698 90947818 -93340844 - MIR3 SINE MIR -8 200 70 180 286 36 48 chr4 90947936 90948020 -93340642 - L3 LINE CR1 -7 1570 1488 41113 66 7 13 chr4 90948814 90955006 -93333656 + L1PA5 LINE L1 2 6152 -2 1779 184 7 0 chr4 90955015 90955314 -93333348 + AluJb SINE Alu 1 301 -11 600 321 78 15 chr4 90956280 90956551 -93332111 - L3b LINE CR1 -176 1407 1120 2185 138 3 0 chr4 90957855 90958166 -93330496 + AluSx SINE Alu 1 312 0 251 157 20 0 chr4 90959468 90959519 -93329143 + GA-rich Low_complexity Low_complexity 4 55 0 202 300 14 14 chr4 90959885 90959955 -93328707 + GA-rich Low_complexity Low_complexity 2 71 0 283 248 159 0 chr4 90959978 90960123 -93328539 + L1MEd LINE L1 715 882 -5237 547 152 133 57 chr4 90960582 90960701 -93327961 - MLT1E2 LTR MaLR -444 182 47 1876 160 0 3 chr4 90960701 90960995 -93327667 + AluJb SINE Alu 3 295 -17 547 152 133 57 chr4 90960995 90961033 -93327629 - MLT1E2 LTR MaLR -579 47 13 27 73 0 0 chr4 90961033 90961088 -93327574 + AT_rich Low_complexity Low_complexity 1 55 0 248 53 26 0 chr4 90961802 90961840 -93326822 + (CA)n Simple_repeat Simple_repeat 2 40 0 437 201 151 78 chr4 90962261 90962440 -93326222 + MIR SINE MIR 36 227 -35 307 254 0 0 chr4 90962438 90962493 -93326169 - MIR SINE MIR -197 65 11 * 193 276 123 41 chr4 90962589 90962759 -93325903 - L2 LINE L2 -12 3301 3118 642 122 106 16 chr4 90966401 90966524 -93322138 - L1MA5A LINE L1 -51 6246 6113 1701 163 28 0 chr4 90966535 90966823 -93321839 - AluSx SINE Alu -16 296 1 493 306 42 0 chr4 90966931 90967124 -93321538 - L1ME LINE L1 -392 5729 5529 397 156 23 250 chr4 90967139 90967447 -93321215 - L1MC4 LINE L1 -3 8039 7802 287 175 31 21 chr4 90967448 90967528 -93321134 + L1MA1 LINE L1 6173 6252 -50 1045 188 18 0 chr4 90967559 90967777 -93320885 - L1 LINE L1 -1606 4540 4319 2091 112 3 0 chr4 90967777 90968063 -93320599 + AluSx SINE Alu 1 287 -25 577 174 31 10 chr4 90968071 90968274 -93320388 + GA-rich Low_complexity Low_complexity 1 207 0 1176 163 27 5 chr4 90968287 90968508 -93320154 - L1 LINE L1 -1821 4325 4100 * 2489 144 119 8 chr4 90968506 90968984 -93319678 + L1PA16 LINE L1 5636 6166 0 1530 201 10 20 chr4 90971090 90971383 -93317279 - AluJo SINE Alu -22 290 1 438 319 22 0 chr4 90971512 90971647 -93317015 + MIR SINE MIR 67 204 -58 251 358 109 29 chr4 90971721 90971995 -93316667 + L2 LINE L2 2980 3275 -38 1024 138 12 6 chr4 90972095 90972262 -93316400 + AluJo SINE Alu 127 294 -18 387 0 0 0 chr4 90972419 90972462 -93316200 + (TG)n Simple_repeat Simple_repeat 1 43 0 1673 190 29 29 chr4 90973610 90973957 -93314705 - MER7A DNA MER2_type 0 346 2 270 73 0 0 chr4 90974197 90974238 -93314424 + (TG)n Simple_repeat Simple_repeat 2 42 0 465 278 37 19 chr4 90974512 90974674 -93313988 - MIR SINE MIR -77 185 21 462 310 63 11 chr4 90974961 90975135 -93313527 - MIR SINE MIR -71 191 9 1859 38 0 13 chr4 90978924 90979184 -93309478 + L1PA4 LINE L1 5906 6162 0 692 256 153 4 chr4 90980608 90980889 -93307773 + MER5C DNA MER1_type 2 324 0 247 301 130 14 chr4 90981181 90981327 -93307335 + MIR SINE MIR 94 256 -6 271 283 198 45 chr4 90981489 90981666 -93306996 + L2 LINE L2 1836 2039 -1275 538 276 129 72 chr4 90982141 90982838 -93305824 + L2 LINE L2 2235 2971 -343 212 227 239 0 chr4 90983161 90983249 -93305413 + MIR SINE MIR 96 204 -58 243 0 0 0 chr4 90983947 90983974 -93304688 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 297 323 105 38 chr4 90984786 90984919 -93303743 - MIR SINE MIR -89 173 32 317 296 44 44 chr4 90985152 90985311 -93303351 + MIR SINE MIR 9 167 -95 340 313 8 38 chr4 90985913 90986044 -93302618 - MER5A DNA MER1_type -61 128 2 245 282 129 8 chr4 90986766 90986890 -93301772 + L1ME LINE L1 5735 5873 -248 2727 269 189 42 chr4 90987266 90989183 -93299479 + HAL1 LINE L1 204 2402 -105 192 152 0 0 chr4 90989256 90989289 -93299373 + (TG)n Simple_repeat Simple_repeat 1 33 0 2284 91 0 0 chr4 90989868 90990166 -93298496 + AluY SINE Alu 1 298 -13 287 45 0 0 chr4 90990286 90990330 -93298332 + L1PA3 LINE L1 6112 6155 0 2214 96 0 0 chr4 90991048 90991355 -93297307 + AluSc SINE Alu 1 307 0 211 344 0 0 chr4 90991596 90991657 -93297005 + CT-rich Low_complexity Low_complexity 2 62 0 512 200 20 7 chr4 90991730 90992198 -93296464 + (TA)n Simple_repeat Simple_repeat 1 474 0 35 24 0 0 chr4 90992762 90992804 -93295858 + AT_rich Low_complexity Low_complexity 1 42 0 24 32 0 0 chr4 90992990 90993021 -93295641 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr4 90993605 90993633 -93295029 + AT_rich Low_complexity Low_complexity 1 28 0 28 48 0 0 chr4 90993829 90993871 -93294791 + AT_rich Low_complexity Low_complexity 1 42 0 24 32 0 0 chr4 90993907 90993938 -93294724 + AT_rich Low_complexity Low_complexity 1 31 0 288 313 199 0 chr4 90994177 90994343 -93294319 + MIR SINE MIR 49 247 -15 321 301 26 20 chr4 90994390 90994543 -93294119 + CT-rich Low_complexity Low_complexity 2 155 0 360 181 0 0 chr4 90997577 90997660 -93291002 + A-rich Low_complexity Low_complexity 1 83 0 22 35 0 0 chr4 90998031 90998060 -93290602 + AT_rich Low_complexity Low_complexity 1 29 0 36 40 0 0 chr4 90998569 90998619 -93290043 + AT_rich Low_complexity Low_complexity 1 50 0 26 0 0 0 chr4 91000852 91000878 -93287784 + AT_rich Low_complexity Low_complexity 1 26 0 1917 169 0 3 chr4 91001123 91001436 -93287226 - AluJb SINE Alu 0 312 1 22 0 0 0 chr4 91001558 91001580 -93287082 + AT_rich Low_complexity Low_complexity 1 22 0 1507 93 4 93 chr4 91001632 91001889 -93286773 + AluSg/x SINE Alu 74 307 -3 258 81 0 0 chr4 91002872 91002909 -93285753 + (CA)n Simple_repeat Simple_repeat 2 38 0 319 223 18 0 chr4 91004502 91004614 -93284048 + (CATATA)n Simple_repeat Simple_repeat 3 116 0 264 207 23 11 chr4 91004623 91004710 -93283952 + (TA)n Simple_repeat Simple_repeat 2 89 0 22 56 0 0 chr4 91004990 91005026 -93283636 + AT_rich Low_complexity Low_complexity 1 36 0 267 220 22 77 chr4 91005742 91005821 -93282841 + MIR3 SINE MIR 119 194 -14 2618 43 0 0 chr4 91005821 91006124 -93282538 - AluY SINE Alu -4 307 5 267 220 22 77 chr4 91006124 91006135 -93282527 + MIR3 SINE MIR 194 204 -4 296 271 161 0 chr4 91006218 91006336 -93282326 + MIR SINE MIR 56 192 -70 272 312 80 34 chr4 91006363 91006549 -93282113 - MIR SINE MIR -56 206 19 2088 194 132 25 chr4 91006552 91006698 -93281964 - Charlie1 DNA MER1_type 0 2761 2632 1702 30 5 0 chr4 91006698 91006901 -93281761 + L1PA3 LINE L1 5951 6154 -1 2088 194 132 25 chr4 91006901 91007361 -93281301 - Charlie1 DNA MER1_type -129 2632 2090 1679 182 156 60 chr4 91007367 91007578 -93281084 - Charlie1 DNA MER1_type -786 1975 1786 2611 102 11 8 chr4 91007578 91007952 -93280710 - THE1C LTR MaLR 0 375 1 1679 182 156 60 chr4 91007952 91008239 -93280423 - Charlie1 DNA MER1_type -975 1786 1429 1970 128 4 0 chr4 91008350 91008624 -93280038 + AluSx SINE Alu 1 275 -37 330 87 0 0 chr4 91008625 91008671 -93279991 + (CATA)n Simple_repeat Simple_repeat 3 48 0 418 333 0 0 chr4 91009459 91009573 -93279089 + L2 LINE L2 3190 3303 -10 1884 173 0 3 chr4 91009832 91010138 -93278524 + AluJb SINE Alu 6 310 -2 624 265 26 48 chr4 91010289 91010478 -93278184 + MIR SINE MIR 72 256 -6 200 269 143 50 chr4 91011435 91011554 -93277108 - MIR SINE MIR -16 246 117 486 209 0 0 chr4 91012244 91012330 -93276332 + MIR SINE MIR 76 161 -101 561 302 69 5 chr4 91014530 91014719 -93273943 - MIR SINE MIR -33 229 29 35 41 0 0 chr4 91016034 91016083 -93272579 + AT_rich Low_complexity Low_complexity 1 49 0 1394 226 66 70 chr4 91016493 91017011 -93271651 + MLT2B1 LTR ERVL 1 516 -4 324 211 0 0 chr4 91017203 91017279 -93271383 + (CATATA)n Simple_repeat Simple_repeat 1 76 0 440 312 42 89 chr4 91018295 91018744 -93269918 + L2 LINE L2 2261 2688 -626 243 0 0 0 chr4 91018755 91018782 -93269880 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2231 80 4 0 chr4 91018803 91019078 -93269584 - AluSp SINE Alu -37 276 1 919 319 102 9 chr4 91019106 91019567 -93269095 - L2 LINE L2 0 3313 2810 703 266 13 0 chr4 91019592 91019750 -93268912 - L2 LINE L2 -622 2692 2533 556 189 42 0 chr4 91019750 91019845 -93268817 + MER6B DNA MER2_type 2 100 -176 626 164 19 0 chr4 91019921 91020025 -93268637 + MER6B DNA MER2_type 105 210 0 266 248 46 65 chr4 91020040 91020193 -93268469 - LTR16C LTR ERVL -2 489 340 273 286 99 0 chr4 91020575 91020666 -93267996 - L2 LINE L2 -828 2486 2387 274 337 52 47 chr4 91020671 91020991 -93267671 + L2 LINE L2 2715 3034 -238 751 243 57 23 chr4 91022050 91022227 -93266435 - MER5A DNA MER1_type 0 189 7 21 36 0 0 chr4 91023033 91023061 -93265601 + AT_rich Low_complexity Low_complexity 1 28 0 787 188 17 11 chr4 91023421 91023602 -93265060 - L1MB8 LINE L1 -1 6177 5996 2866 195 56 7 chr4 91023604 91024334 -93264328 - L1MB8 LINE L1 -234 5944 5172 1751 189 9 15 chr4 91024334 91024673 -93263989 - MER1B DNA MER1_type 0 337 1 2866 195 56 7 chr4 91024673 91024761 -93263901 - L1MB8 LINE L1 -1006 5172 5090 375 241 97 37 chr4 91024821 91025107 -93263555 - L1P4 LINE L1 -580 5581 5268 368 329 54 7 chr4 91025311 91025460 -93263202 + MIR SINE MIR 7 162 -100 2037 139 124 18 chr4 91026715 91027102 -93261560 - MSTA LTR MaLR 0 428 1 239 369 0 39 chr4 91027186 91027316 -93261346 + MIR SINE MIR 33 157 -105 401 0 20 0 chr4 91027678 91027727 -93260935 + (TG)n Simple_repeat Simple_repeat 2 51 0 2090 77 0 8 chr4 91031381 91031642 -93257020 + AluSc SINE Alu 32 290 -19 361 353 141 27 chr4 91031760 91032080 -93256582 - L2 LINE L2 -31 3241 2858 236 30 30 0 chr4 91032080 91032113 -93256549 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 361 353 141 27 chr4 91032113 91032260 -93256402 - L2 LINE L2 -414 2858 2729 939 230 60 5 chr4 91035321 91035538 -93253124 - MIR SINE MIR -27 235 7 432 0 0 0 chr4 91035571 91035619 -93253043 + (CA)n Simple_repeat Simple_repeat 1 48 0 183 294 0 112 chr4 91035660 91035803 -93252859 + MIR3 SINE MIR 82 208 0 195 372 116 20 chr4 91039193 91039392 -93249270 - L2 LINE L2 -251 3021 2804 342 0 0 0 chr4 91039434 91039472 -93249190 + (A)n Simple_repeat Simple_repeat 1 38 0 1410 195 28 28 chr4 91039479 91039766 -93248896 + AluJo SINE Alu 2 288 -24 5374 119 19 17 chr4 91040220 91041093 -93247569 + L1PA16 LINE L1 5283 6157 -9 237 187 13 40 chr4 91041116 91041191 -93247471 + L1MC3 LINE L1 7025 7097 -688 285 275 0 12 chr4 91041205 91041285 -93247377 + MLT1F1 LTR MaLR 46 124 -443 1971 212 75 29 chr4 91041285 91041846 -93246816 + L1MC3 LINE L1 7199 7785 0 260 327 209 0 chr4 91042340 91042493 -93246169 + MIR SINE MIR 75 259 -3 603 204 0 61 chr4 91042680 91042812 -93245850 + FLAM_A SINE Alu 1 124 -9 497 320 61 76 chr4 91043008 91043516 -93245146 - L2 LINE L2 -5 3267 2750 2950 6 0 0 chr4 91045680 91045998 -93242664 - AluYb8 SINE Alu 0 318 1 2408 146 36 2 chr4 91046267 91046684 -93241978 - Tigger4(Zombi) DNA MER2_type 0 2731 2301 484 147 37 64 chr4 91046678 91046736 -93241926 - Tigger4(Zombi) DNA MER2_type -2625 106 51 * 2389 71 0 7 chr4 91046736 91047031 -93241631 + AluY SINE Alu 1 293 -18 484 147 37 64 chr4 91047031 91047081 -93241581 - Tigger4(Zombi) DNA MER2_type -2680 51 1 279 208 69 0 chr4 91047081 91047153 -93241509 - MIR SINE MIR -65 197 121 22 0 0 0 chr4 91047522 91047544 -93241118 + AT_rich Low_complexity Low_complexity 1 22 0 1526 173 0 8 chr4 91047546 91047795 -93240867 + AluJo SINE Alu 3 249 -63 1071 143 91 19 chr4 91049017 91049227 -93239435 + MER30 DNA MER1_type 1 225 -5 23 0 0 0 chr4 91050225 91050248 -93238414 + AT_rich Low_complexity Low_complexity 1 23 0 934 283 90 39 chr4 91050570 91051077 -93237585 + L2 LINE L2 2777 3304 -9 516 319 70 38 chr4 91051749 91051962 -93236700 + LTR67 LTR ERVL 97 316 -241 4421 119 53 17 chr4 91052003 91052757 -93235905 + L1MA3 LINE L1 5484 6264 -41 5595 167 8 5 chr4 91052757 91054600 -93234062 + L1PB2 LINE L1 4302 6146 -5 367 85 0 0 chr4 91054604 91054663 -93233999 + L1MA3 LINE L1 6247 6305 0 585 313 39 10 chr4 91054685 91054893 -93233769 + LTR67 LTR ERVL 341 554 -3 227 314 114 46 chr4 91054905 91055080 -93233582 + L2 LINE L2 3035 3221 -51 1898 237 102 20 chr4 91055315 91056369 -93232293 + L1MC4 LINE L1 4869 5388 -758 * 2528 157 29 39 chr4 91056009 91056398 -93232264 + L1MB2 LINE L1 5654 6038 -133 1484 180 2 109 chr4 91056398 91056613 -93232049 + MLT1A2 LTR MaLR 5 157 -217 192 40 0 0 chr4 91056613 91056638 -93232024 + (TC)n Simple_repeat Simple_repeat 1 25 0 1484 180 2 109 chr4 91056638 91056834 -93231828 + MLT1A2 LTR MaLR 157 372 -2 2528 157 29 39 chr4 91056834 91056955 -93231707 + L1MB2 LINE L1 6038 6159 -12 813 188 6 55 chr4 91056955 91057136 -93231526 - AluJo SINE Alu -21 291 120 1052 182 12 0 chr4 91057268 91057433 -93231229 + FAM SINE Alu 1 167 -8 6038 30 3 0 chr4 91057703 91058427 -93230235 - L1PA3 LINE L1 -1336 4810 4085 7396 33 0 20 chr4 91058427 91059795 -93228867 + L1PA3 LINE L1 4806 6155 0 194 0 39 0 chr4 91059801 91059827 -93228835 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 29 47 0 0 chr4 91060027 91060070 -93228592 + AT_rich Low_complexity Low_complexity 1 43 0 21 57 0 0 chr4 91061613 91061648 -93227014 + AT_rich Low_complexity Low_complexity 1 35 0 1478 191 18 21 chr4 91061831 91062114 -93226548 + AluJo SINE Alu 1 282 -30 366 175 0 0 chr4 91062133 91062213 -93226449 + G-rich Low_complexity Low_complexity 1 80 0 476 32 0 16 chr4 91062724 91062787 -93225875 + (GAAA)n Simple_repeat Simple_repeat 4 65 0 523 337 81 37 chr4 91063345 91063775 -93224887 + L2 LINE L2 2513 2961 -353 2089 101 47 0 chr4 91063777 91064055 -93224607 - AluSc SINE Alu -18 291 1 306 289 96 6 chr4 91064111 91064277 -93224385 + L2 LINE L2 3095 3275 -38 1679 193 0 22 chr4 91065189 91065505 -93223157 + AluJo SINE Alu 1 309 -3 21 0 0 0 chr4 91066015 91066036 -93222626 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 91066209 91066231 -93222431 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 91066279 91066309 -93222353 + AT_rich Low_complexity Low_complexity 1 30 0 1605 165 6 67 chr4 91067860 91068188 -93220474 + AluJo SINE Alu 1 308 -4 1053 174 18 80 chr4 91068229 91068279 -93220383 - MER20 DNA MER1_type -4 215 163 2325 88 0 3 chr4 91068279 91068573 -93220089 - AluSc SINE Alu -14 295 3 1053 174 18 80 chr4 91068573 91068746 -93219916 - MER20 DNA MER1_type -56 163 6 21 0 0 0 chr4 91068906 91068927 -93219735 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 91070733 91070754 -93217908 + AT_rich Low_complexity Low_complexity 1 21 0 252 65 0 0 chr4 91070836 91070867 -93217795 + U2 snRNA snRNA 1 31 -157 189 268 18 18 chr4 91071345 91071401 -93217261 - MER5A DNA MER1_type -99 90 35 379 299 30 37 chr4 91071453 91071617 -93217045 + MER115 DNA AcHobo 371 533 -160 395 198 12 12 chr4 91071940 91072021 -93216641 + Zaphod DNA AcHobo 2806 2886 -1145 * 761 217 16 11 chr4 91072009 91072193 -93216469 + Zaphod DNA AcHobo 3842 4026 -5 2958 235 62 50 chr4 91072312 91072877 -93215785 - Charlie1a DNA MER1_type -1724 1037 481 2357 82 3 0 chr4 91072877 91073169 -93215493 + AluSc SINE Alu 1 293 -16 1505 173 8 11 chr4 91073179 91073445 -93215217 + AluJo SINE Alu 1 265 -47 2958 235 62 50 chr4 91073445 91073892 -93214770 - Charlie1a DNA MER1_type -2288 473 1 249 283 98 11 chr4 91074725 91074817 -93213845 - L2 LINE L2 0 3313 3214 612 294 81 76 chr4 91076764 91076801 -93211861 + MLT1J LTR MaLR 1 36 -475 2047 156 0 0 chr4 91076801 91077131 -93211531 - AluSx SINE Alu 0 312 1 612 294 81 76 chr4 91077131 91077501 -93211161 + MLT1J LTR MaLR 36 410 -101 1815 110 60 0 chr4 91077502 91077784 -93210878 + L1PA14 LINE L1 5862 6160 -1 479 297 14 7 chr4 91079012 91079150 -93209512 - MIR SINE MIR -123 139 1 973 299 54 24 chr4 91079318 91079780 -93208882 - L1ME3A LINE L1 -249 5921 5446 683 251 0 37 chr4 91079796 91079959 -93208703 - AluJo SINE Alu -19 293 137 255 209 44 22 chr4 91079964 91080055 -93208607 - L1P5 LINE L1 -716 5440 5348 402 315 87 36 chr4 91080129 91080405 -93208257 - L1ME3A LINE L1 -929 5217 4928 30 27 0 0 chr4 91080916 91080953 -93207709 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chr4 91081789 91081821 -93206841 + AT_rich Low_complexity Low_complexity 1 32 0 2203 98 7 3 chr4 91082027 91082323 -93206339 + AluSg SINE Alu 1 297 -13 418 293 35 11 chr4 91082323 91082472 -93206190 + MIR SINE MIR 40 191 -62 851 116 16 0 chr4 91082475 91082604 -93206058 - AluJo SINE Alu -171 131 1 1861 110 0 0 chr4 91082629 91082875 -93205787 - AluSg SINE Alu -63 247 2 26 50 0 0 chr4 91083582 91083622 -93205040 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr4 91083890 91083911 -93204751 + AT_rich Low_complexity Low_complexity 1 21 0 1760 115 0 0 chr4 91084833 91085067 -93203595 + AluSg/x SINE Alu 75 308 -4 364 344 58 7 chr4 91085068 91085222 -93203440 + MIR SINE MIR 26 187 -75 180 111 0 0 chr4 91085226 91085253 -93203409 + (CATATA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr4 91085858 91085879 -93202783 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr4 91085917 91085954 -93202708 + AT_rich Low_complexity Low_complexity 1 37 0 3843 125 21 5 chr4 91086263 91086885 -93201777 + L1PA16 LINE L1 5526 6157 -9 824 90 8 30 chr4 91087630 91087763 -93200899 + L1PA6 LINE L1 6018 6147 -7 804 148 7 0 chr4 91088328 91088463 -93200199 - AluSc SINE Alu 0 309 174 21 0 0 0 chr4 91088853 91088874 -93199788 + AT_rich Low_complexity Low_complexity 1 21 0 240 35 0 0 chr4 91089409 91089438 -93199224 + (CA)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr4 91089465 91089489 -93199173 + AT_rich Low_complexity Low_complexity 1 24 0 2294 105 3 0 chr4 91090188 91090484 -93198178 + AluSp SINE Alu 1 297 -16 24 0 0 0 chr4 91090653 91090677 -93197985 + AT_rich Low_complexity Low_complexity 1 24 0 21 82 0 0 chr4 91093602 91093651 -93195011 + AT_rich Low_complexity Low_complexity 1 49 0 471 317 42 12 chr4 91093845 91094012 -93194650 - MIR3 SINE MIR -21 187 16 921 236 67 35 chr4 91094708 91095074 -93193588 - Charlie2 DNA MER1_type -18 2844 2460 2143 143 0 3 chr4 91095074 91095381 -93193281 - AluSx SINE Alu -6 306 1 921 236 67 35 chr4 91095381 91095447 -93193215 - Charlie2 DNA MER1_type -402 2460 2398 604 259 167 0 chr4 91095445 91095619 -93193043 - Charlie2 DNA MER1_type -2510 272 70 * 1015 137 97 115 chr4 91095622 91095664 -93192998 + L1MC2 LINE L1 5868 5909 -435 1356 163 41 82 chr4 91095664 91095958 -93192704 + AluJo SINE Alu 1 282 -30 1015 137 97 115 chr4 91095958 91096193 -93192469 + L1MC2 LINE L1 5909 6140 -204 441 335 41 16 chr4 91096243 91096437 -93192225 - MIR SINE MIR -27 235 37 265 274 26 98 chr4 91096773 91096926 -93191736 - L2 LINE L2 -913 2401 2260 700 306 118 33 chr4 91096964 91097511 -93191151 + L2 LINE L2 2633 3309 -4 438 154 33 0 chr4 91097807 91097898 -93190764 + L1MB7 LINE L1 6090 6183 -1 937 36 0 0 chr4 91098040 91098186 -93190476 + L1PA4 LINE L1 6030 6175 0 284 246 231 8 chr4 91098197 91098331 -93190331 + MIR SINE MIR 8 171 -91 1124 198 37 21 chr4 91098332 91098487 -93190175 - L1MB8 LINE L1 -344 5834 5683 2223 103 3 13 chr4 91098487 91098787 -93189875 - AluSg SINE Alu -13 297 1 1124 198 37 21 chr4 91098787 91098988 -93189674 - L1MB8 LINE L1 -495 5683 5350 186 103 0 0 chr4 91099105 91099134 -93189528 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 2362 99 0 0 chr4 91099450 91099754 -93188908 - AluSc SINE Alu -5 304 1 21 0 0 0 chr4 91100685 91100706 -93187956 + AT_rich Low_complexity Low_complexity 1 21 0 549 83 70 18 chr4 91101583 91101799 -93186863 + (TA)n Simple_repeat Simple_repeat 1 227 0 2424 56 0 0 chr4 91101799 91102087 -93186575 - AluY SINE Alu -21 290 3 29 28 0 0 chr4 91102090 91102126 -93186536 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr4 91102490 91102510 -93186152 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 260 409 7 0 chr4 91103025 91103162 -93185500 - MIR SINE MIR -114 148 11 315 0 0 0 chr4 91103290 91103325 -93185337 + (CA)n Simple_repeat Simple_repeat 2 36 0 344 276 200 72 chr4 91104888 91105138 -93183524 - L2 LINE L2 -5 3267 2986 900 348 50 5 chr4 91105416 91105816 -93182846 - L2 LINE L2 0 3313 2896 2351 62 26 10 chr4 91105818 91106124 -93182538 - AluY SINE Alu 0 311 1 817 249 6 6 chr4 91106207 91106384 -93182278 + MER5B DNA MER1_type 1 177 -1 204 293 17 0 chr4 91106388 91106446 -93182216 - L2 LINE L2 -517 2797 2739 984 154 6 24 chr4 91107458 91107627 -93181035 + FRAM SINE Alu 1 160 -16 234 191 0 0 chr4 91107810 91107857 -93180805 + (TG)n Simple_repeat Simple_repeat 2 48 0 1092 122 0 0 chr4 91107857 91108005 -93180657 - AluSg/x SINE Alu -32 278 131 2186 204 20 10 chr4 91108058 91108460 -93180202 - MER6 DNA MER2_type -459 406 1 1528 126 43 138 chr4 91109633 91109870 -93178792 + THE1C LTR MaLR 1 184 -191 309 51 0 0 chr4 91109870 91109909 -93178753 + (TG)n Simple_repeat Simple_repeat 1 39 0 1528 126 43 138 chr4 91109909 91110085 -93178577 + THE1C LTR MaLR 184 375 0 640 254 94 60 chr4 91110085 91110656 -93178006 + MLT1F LTR MaLR 24 590 0 306 309 73 26 chr4 91110805 91110996 -93177666 + MLT1G-int LTR MaLR 296 495 -876 2040 106 0 0 chr4 91111006 91111271 -93177391 - AluSg SINE Alu -45 265 1 297 270 56 127 chr4 91112066 91112388 -93176274 + MLT1G-int LTR MaLR 1073 1371 0 700 231 102 117 chr4 91112388 91112944 -93175718 + MLT1G LTR MaLR 1 540 -2 1744 131 22 73 chr4 91113178 91113491 -93175171 + AluJb SINE Alu 13 309 -3 264 280 68 68 chr4 91114036 91114168 -93174494 - L2 LINE L2 -7 3265 3134 546 277 71 41 chr4 91114686 91114953 -93173709 + L1ME4a LINE L1 5384 5658 -463 1826 193 111 144 chr4 91115094 91116016 -93172646 + LTR28 LTR ERV1 1 1020 0 22 35 0 0 chr4 91116021 91116050 -93172612 + AT_rich Low_complexity Low_complexity 1 29 0 273 275 183 17 chr4 91116057 91116177 -93172485 - MIR SINE MIR -112 150 11 274 282 47 24 chr4 91116364 91116534 -93172128 + L1ME4a LINE L1 5946 6119 -2 29 60 0 0 chr4 91117171 91117221 -93171441 + AT_rich Low_complexity Low_complexity 1 50 0 321 259 74 19 chr4 91117745 91117907 -93170755 - MER104 DNA Tc2 -6 174 4 1191 148 22 13 chr4 91117978 91118207 -93170455 + L1MA4 LINE L1 6069 6299 -1 1899 119 11 4 chr4 91118236 91118513 -93170149 + AluSq SINE Alu 1 279 -34 705 39 10 19 chr4 91118514 91118617 -93170045 + (GAGAA)n Simple_repeat Simple_repeat 4 105 0 637 256 29 29 chr4 91119009 91119216 -93169446 - L2 LINE L2 -10 3303 3097 21 0 0 0 chr4 91119274 91119295 -93169367 + AT_rich Low_complexity Low_complexity 1 21 0 2230 97 0 7 chr4 91119522 91119821 -93168841 + AluSc SINE Alu 4 300 -9 2279 108 3 3 chr4 91121071 91121377 -93167285 + AluSx SINE Alu 1 306 -6 261 83 0 0 chr4 91121380 91121416 -93167246 + (GGAGA)n Simple_repeat Simple_repeat 2 37 0 204 344 0 0 chr4 91124033 91124094 -93164568 - MIR SINE MIR -118 144 84 6762 149 24 28 chr4 91124391 91126435 -93162227 + L1MA4 LINE L1 4014 6070 -230 1734 159 14 0 chr4 91126435 91126712 -93161950 + AluSx SINE Alu 21 301 -11 267 31 0 0 chr4 91126712 91126744 -93161918 + (GGAA)n Simple_repeat Simple_repeat 1 32 0 1181 188 39 32 chr4 91126744 91127053 -93161609 + L1MA4 LINE L1 5989 6299 -1 808 248 79 33 chr4 91127448 91127662 -93161000 - MER58A DNA MER1_type 0 224 1 963 264 52 18 chr4 91127688 91128018 -93160644 - MLT1J LTR MaLR 0 511 171 24 0 0 0 chr4 91128118 91128142 -93160520 + AT_rich Low_complexity Low_complexity 1 24 0 244 299 58 46 chr4 91129724 91129898 -93158764 + L2 LINE L2 2749 2924 -390 1628 186 46 41 chr4 91130154 91130542 -93158120 + MLT1B LTR MaLR 1 390 0 298 333 184 15 chr4 91130542 91130743 -93157919 - MIR SINE MIR -25 237 3 285 229 36 12 chr4 91131013 91131096 -93157566 + HsTC2 DNA Tc2 1 85 -1813 210 256 0 0 chr4 91131312 91131355 -93157307 + A-rich Low_complexity Low_complexity 5 47 0 255 61 0 0 chr4 91131491 91131524 -93157138 + (A)n Simple_repeat Simple_repeat 1 33 0 620 136 0 29 chr4 91132524 91132627 -93156035 + AluJo SINE Alu 37 136 -176 379 257 28 83 chr4 91132857 91132926 -93155736 + MIR SINE MIR 125 183 -79 2160 104 3 10 chr4 91132926 91133223 -93155439 + AluSx SINE Alu 1 295 -17 379 257 28 83 chr4 91133223 91133297 -93155365 + MIR SINE MIR 183 260 -2 682 256 26 89 chr4 91134011 91134280 -93154382 - MIR SINE MIR -3 259 8 227 257 48 76 chr4 91134315 91134420 -93154242 - MER91C DNA MER1_type -37 103 2 27731 93 11 5 chr4 91134714 91139242 -93149420 + L1PA7 LINE L1 1268 5826 -328 2786 19 0 0 chr4 91139242 91139552 -93149110 + AluYb8 SINE Alu 1 310 -8 27731 93 11 5 chr4 91139552 91139880 -93148782 + L1PA7 LINE L1 5826 6150 -4 218 284 15 15 chr4 91140149 91140216 -93148446 - MIR SINE MIR -123 139 73 205 272 198 0 chr4 91140819 91140900 -93147762 + MIR SINE MIR 161 257 -5 1909 143 0 3 chr4 91141802 91142089 -93146573 - AluSx SINE Alu -26 286 1 1544 186 24 14 chr4 91143128 91143423 -93145239 + AluJo SINE Alu 6 303 -9 22 56 0 0 chr4 91144510 91144546 -93144116 + AT_rich Low_complexity Low_complexity 1 36 0 1838 115 88 3 chr4 91144610 91144941 -93143721 - MER46B DNA MER2_type -1 235 2 229 317 99 20 chr4 91145088 91145189 -93143473 + MIR3 SINE MIR 67 175 -33 725 278 51 28 chr4 91145250 91145437 -93143225 - MIR SINE MIR 0 262 66 2130 69 65 0 chr4 91145437 91145714 -93142948 + AluSp SINE Alu 4 298 -15 725 278 51 28 chr4 91145714 91145781 -93142881 - MIR SINE MIR -196 66 2 22 70 0 0 chr4 91147308 91147351 -93141311 + AT_rich Low_complexity Low_complexity 1 43 0 2121 114 3 7 chr4 91147405 91147704 -93140958 - AluSq SINE Alu -9 304 7 1589 97 26 9 chr4 91148428 91148654 -93140008 + MER30 DNA MER1_type 1 230 0 1209 161 4 38 chr4 91149818 91150054 -93138608 - AluJo SINE Alu -4 308 81 851 228 26 16 chr4 91150335 91150353 -93138309 + L1MDa LINE L1 34 50 -6490 1718 143 0 0 chr4 91150353 91150605 -93138057 - AluSg SINE Alu -20 290 39 851 228 26 16 chr4 91150605 91150779 -93137883 + L1MDa LINE L1 50 228 -6312 303 49 0 0 chr4 91151109 91151150 -93137512 + (TG)n Simple_repeat Simple_repeat 2 42 0 198 231 0 0 chr4 91153038 91153077 -93135585 - L2 LINE L2 -16 3256 3218 491 318 48 48 chr4 91153171 91153482 -93135180 + L2 LINE L2 3000 3310 -3 413 217 58 131 chr4 91155415 91155844 -93132818 + L1ME4a LINE L1 5628 6025 -96 220 363 73 63 chr4 91158257 91158557 -93130105 - L2 LINE L2 0 3272 2970 818 332 102 37 chr4 91158687 91159471 -93129191 - L2 LINE L2 -633 2681 1847 838 201 0 18 chr4 91160541 91160710 -93127952 + FRAM SINE Alu 11 176 0 183 298 18 44 chr4 91160794 91160908 -93127754 + L2 LINE L2 2352 2462 -852 445 177 0 66 chr4 91162721 91162902 -93125760 + GA-rich Low_complexity Low_complexity 2 170 0 272 278 41 21 chr4 91163958 91164055 -93124607 - MLT1K LTR MaLR -43 545 447 214 279 63 0 chr4 91165528 91165607 -93123055 + MIR SINE MIR 82 165 -97 22 56 0 0 chr4 91166184 91166220 -93122442 + AT_rich Low_complexity Low_complexity 1 36 0 1387 209 25 7 chr4 91166583 91166860 -93121802 + AluJo SINE Alu 1 282 -30 2463 167 9 2 chr4 91167109 91167534 -93121128 + MSTA LTR MaLR 1 428 0 22 0 0 0 chr4 91168481 91168503 -93120159 + AT_rich Low_complexity Low_complexity 1 22 0 499 255 12 37 chr4 91169378 91169539 -93119123 - MER112 DNA MER1_type -103 157 1 27 0 0 0 chr4 91169930 91169957 -93118705 + AT_rich Low_complexity Low_complexity 1 27 0 1798 162 3 27 chr4 91170162 91170459 -93118203 - AluJo SINE Alu -18 294 5 1860 175 118 0 chr4 91170686 91171051 -93117611 - MSTA LTR MaLR -20 408 1 10018 159 12 2 chr4 91171056 91172681 -93115981 - MSTA-int LTR MaLR -6 1645 5 2045 207 67 0 chr4 91172685 91173086 -93115576 - MSTA LTR MaLR 0 428 1 190 344 117 43 chr4 91174051 91174333 -93114329 + L2 LINE L2 721 1023 -2291 358 359 79 13 chr4 91174470 91174788 -93113874 + L2 LINE L2 2292 2630 -684 938 193 35 5 chr4 91174893 91175095 -93113567 - MER3 DNA MER1_type 0 209 2 307 266 43 32 chr4 91175096 91175190 -93113472 + L2 LINE L2 3148 3242 -30 671 319 51 0 chr4 91176237 91176494 -93112168 + MLT1J1 LTR MaLR 64 333 -113 1967 132 39 39 chr4 91176584 91176948 -93111714 + THE1B LTR MaLR 1 364 0 182 295 103 0 chr4 91177639 91177717 -93110945 + L2 LINE L2 3228 3313 0 1722 151 11 25 chr4 91177947 91178232 -93110430 - AluJo SINE Alu -31 281 1 617 286 29 6 chr4 91179293 91179464 -93109198 - MIR SINE MIR -28 234 60 1372 242 53 8 chr4 91179643 91179998 -93108664 + MLT1C LTR MaLR 97 467 0 316 345 84 13 chr4 91180240 91180478 -93108184 - L2 LINE L2 -1070 2244 1990 207 69 0 0 chr4 91180751 91180780 -93107882 + (T)n Simple_repeat Simple_repeat 1 29 0 951 201 6 0 chr4 91180780 91180954 -93107708 - FAM SINE Alu 0 175 1 227 298 22 84 chr4 91181200 91181378 -93107284 - L2 LINE L2 -174 3098 2932 1055 89 0 0 chr4 91182188 91182334 -93106328 - L1PA8 LINE L1 0 6172 6027 2007 158 65 3 chr4 91184880 91185247 -93103415 - MLT1B LTR MaLR 0 390 1 375 206 187 0 chr4 91185819 91185926 -93102736 - L2 LINE L2 0 3313 3187 22 0 0 0 chr4 91186118 91186140 -93102522 + AT_rich Low_complexity Low_complexity 1 22 0 405 0 0 0 chr4 91186563 91186608 -93102054 + (TC)n Simple_repeat Simple_repeat 2 46 0 306 0 0 0 chr4 91186607 91186641 -93102021 + (TG)n Simple_repeat Simple_repeat 1 34 0 * 369 0 0 0 chr4 91186770 91186811 -93101851 + (CA)n Simple_repeat Simple_repeat 1 41 0 403 279 140 53 chr4 91186972 91187237 -93101425 - L1ME LINE L1 -462 5702 5415 609 203 52 13 chr4 91187538 91187691 -93100971 + MER112 DNA MER1_type 90 248 -12 25 51 0 0 chr4 91189349 91189388 -93099274 + AT_rich Low_complexity Low_complexity 1 39 0 268 132 0 0 chr4 91189388 91189441 -93099221 + L1MC4 LINE L1 6651 6703 -1339 1518 236 80 33 chr4 91189524 91189973 -93098689 + MLT1D LTR MaLR 36 505 0 2280 140 13 5 chr4 91190150 91190522 -93098140 - THE1C LTR MaLR 0 375 1 1748 157 7 20 chr4 91190616 91190922 -93097740 + AluJo SINE Alu 11 312 0 479 336 21 21 chr4 91190923 91191262 -93097400 + L1ME4a LINE L1 5574 5912 -209 225 65 0 0 chr4 91194388 91194419 -93094243 + (TC)n Simple_repeat Simple_repeat 2 32 0 207 0 0 0 chr4 91195060 91195083 -93093579 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 255 224 109 0 chr4 91195855 91195940 -93092722 - MIR SINE MIR -62 146 99 192 355 32 0 chr4 91196180 91196242 -93092420 + L2 LINE L2 3003 3066 -206 379 271 215 14 chr4 91196476 91196620 -93092042 - MER5A DNA MER1_type -6 183 11 267 298 70 9 chr4 91196902 91197016 -93091646 + L2 LINE L2 3193 3313 0 1656 215 16 21 chr4 91197934 91198310 -93090352 + MLT1A2 LTR MaLR 1 374 0 697 285 65 5 chr4 91200143 91200357 -93088305 + MIR SINE MIR 15 241 -21 357 307 107 58 chr4 91200551 91201160 -93087502 - HAL1b LINE L1 -641 707 69 183 162 0 0 chr4 91201417 91201454 -93087208 + T-rich Low_complexity Low_complexity 1 37 0 339 298 81 42 chr4 91202444 91202914 -93085748 - L1MEc LINE L1 -3576 2570 2110 1727 236 62 67 chr4 91203590 91204140 -93084522 - MLT1H LTR MaLR -2 547 1 2143 125 0 0 chr4 91204318 91204614 -93084048 - AluSx SINE Alu -16 296 1 370 365 16 60 chr4 91204660 91204909 -93083753 - L2 LINE L2 -537 2777 2540 193 298 0 35 chr4 91204950 91205007 -93083655 - L2 LINE L2 -22 3291 3237 22 70 0 0 chr4 91205228 91205271 -93083391 + AT_rich Low_complexity Low_complexity 1 43 0 435 38 0 0 chr4 91205850 91205903 -93082759 + (CA)n Simple_repeat Simple_repeat 2 54 0 488 321 5 21 chr4 91206175 91206362 -93082300 + MIR SINE MIR 37 220 -42 24 0 0 0 chr4 91206651 91206675 -93081987 + AT_rich Low_complexity Low_complexity 1 24 0 260 261 172 38 chr4 91206767 91206924 -93081738 + MER5B DNA MER1_type 1 178 0 249 292 65 65 chr4 91206997 91207093 -93081569 - MIR3 SINE MIR -21 187 89 2092 111 24 0 chr4 91207093 91207382 -93081280 + AluSx SINE Alu 1 296 -16 249 292 65 65 chr4 91207382 91207439 -93081223 - MIR3 SINE MIR -118 90 34 286 245 53 0 chr4 91207452 91207546 -93081116 + L1MC4 LINE L1 7444 7542 -500 981 191 71 0 chr4 91207599 91207824 -93080838 + L1MB3 LINE L1 5941 6181 -2 2067 137 10 0 chr4 91207922 91208222 -93080440 + AluSx SINE Alu 1 303 -9 1676 181 13 19 chr4 91208233 91208547 -93080115 + AluJo SINE Alu 1 312 0 23 78 0 0 chr4 91208776 91208827 -93079835 + AT_rich Low_complexity Low_complexity 1 51 0 1615 162 4 11 chr4 91209225 91209503 -93079159 - AluJo SINE Alu 0 312 37 267 329 25 0 chr4 91209607 91209686 -93078976 + MIR SINE MIR 3 83 -179 1111 86 0 0 chr4 91209702 91209854 -93078808 + L1PA4 LINE L1 6001 6152 -3 303 280 40 32 chr4 91209979 91210104 -93078558 + L1ME LINE L1 5262 5387 -2421 1579 192 118 37 chr4 91210131 91210590 -93078072 + LTR54B LTR ERV1 1 496 -2 388 236 28 9 chr4 91210671 91210777 -93077885 + L1ME LINE L1 5555 5662 -459 237 227 0 0 chr4 91210881 91210925 -93077737 + (CA)n Simple_repeat Simple_repeat 1 44 0 23 33 0 0 chr4 91211022 91211052 -93077610 + AT_rich Low_complexity Low_complexity 1 30 0 509 319 38 7 chr4 91212174 91212392 -93076270 + MIR SINE MIR 25 248 -14 2411 75 0 0 chr4 91213162 91213455 -93075207 - AluY SINE Alu -18 293 1 2211 71 0 20 chr4 91213857 91214152 -93074510 - AluY SINE Alu -22 289 1 22 56 0 0 chr4 91214327 91214363 -93074299 + AT_rich Low_complexity Low_complexity 1 36 0 2961 128 20 67 chr4 91214499 91215084 -93073578 + L1MB2 LINE L1 5600 6157 -14 2338 80 0 10 chr4 91215150 91215450 -93073212 + AluSc SINE Alu 1 297 -12 520 206 8 24 chr4 91216131 91216257 -93072405 - FLAM_A SINE Alu -18 124 1 701 290 61 19 chr4 91217628 91217842 -93070820 + MIR SINE MIR 2 224 -38 432 0 0 0 chr4 91219714 91219762 -93068900 + (TG)n Simple_repeat Simple_repeat 2 49 0 193 200 36 18 chr4 91220168 91220223 -93068439 + L2 LINE L2 2925 2980 -333 1899 148 3 10 chr4 91220400 91220691 -93067971 + AluSx SINE Alu 14 302 -10 1447 170 22 74 chr4 91220695 91221007 -93067655 + AluJb SINE Alu 1 296 -16 208 292 79 34 chr4 91221488 91221577 -93067085 - L2 LINE L2 -923 2391 2299 194 308 90 0 chr4 91221808 91221886 -93066776 - L2 LINE L2 -2 3311 3227 2240 104 3 0 chr4 91221976 91222284 -93066378 + AluSc SINE Alu 1 309 0 250 379 80 30 chr4 91222502 91222803 -93065859 - L2 LINE L2 -1807 1507 1192 2223 96 0 13 chr4 91223167 91223469 -93065193 + AluSg SINE Alu 1 298 -12 1821 145 4 0 chr4 91223588 91223857 -93064805 + AluSg SINE Alu 38 307 -3 801 179 49 6 chr4 91223993 91224155 -93064507 - MER2 DNA MER2_type -25 320 152 1301 117 53 0 chr4 91225516 91225722 -93062940 - L1PA15 LINE L1 -9 6156 5940 2028 90 13 40 chr4 91225734 91225890 -93062772 - AluSq SINE Alu -22 291 145 2627 43 0 0 chr4 91225890 91226194 -93062468 - AluY SINE Alu -7 304 1 2028 90 13 40 chr4 91226194 91226336 -93062326 - AluSq SINE Alu -168 145 1 2129 119 3 3 chr4 91226407 91226709 -93061953 + AluSx SINE Alu 1 302 -10 890 240 35 31 chr4 91227516 91227745 -93060917 - MIR SINE MIR -30 232 3 23 33 0 0 chr4 91228213 91228243 -93060419 + AT_rich Low_complexity Low_complexity 1 30 0 2493 64 0 16 chr4 91230608 91230921 -93057741 + AluY SINE Alu 1 308 -3 260 247 37 0 chr4 91231082 91231163 -93057499 + MER103 DNA DNA 33 116 -50 306 272 43 86 chr4 91231559 91231791 -93056871 - L1MC/D LINE L1 -2314 5494 5273 344 164 0 0 chr4 91232904 91232971 -93055691 - L1MA6 LINE L1 0 6300 6234 24 0 0 0 chr4 91233075 91233099 -93055563 + AT_rich Low_complexity Low_complexity 1 24 0 743 287 45 20 chr4 91233424 91233668 -93054994 + MIR SINE MIR 13 262 0 1532 258 66 57 chr4 91234010 91234665 -93053997 + MER20B DNA MER1_type 1 661 -122 328 332 47 47 chr4 91234721 91234914 -93053748 + L3b LINE CR1 1221 1413 -170 423 325 9 0 chr4 91236872 91236986 -93051676 - L2 LINE L2 -3 3269 3155 196 268 0 0 chr4 91237060 91237101 -93051561 - MIR SINE MIR -21 241 201 23 0 0 0 chr4 91237128 91237151 -93051511 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr4 91237176 91237213 -93051449 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr4 91237271 91237295 -93051367 + AT_rich Low_complexity Low_complexity 1 24 0 1648 203 71 39 chr4 91238174 91238666 -93049996 + Charlie4a DNA MER1_type 1 508 0 3162 254 168 32 chr4 91238987 91239036 -93049626 + L2 LINE L2 1351 1392 -1922 252 0 0 0 chr4 91239036 91239064 -93049598 + (CA)n Simple_repeat Simple_repeat 2 29 0 3162 254 168 32 chr4 91239064 91240446 -93048216 + L2 LINE L2 1392 2977 -337 6229 135 44 10 chr4 91240780 91242076 -93046586 - L1MA3 LINE L1 0 6305 4975 3386 49 8 76 chr4 91242077 91242548 -93046114 - MLT2A1 LTR ERVL 0 444 6 1873 152 0 3 chr4 91242555 91242864 -93045798 - L1MA3 LINE L1 -1166 4980 4673 2547 60 0 0 chr4 91243216 91243517 -93045145 + AluY SINE Alu 1 301 -10 21 0 0 0 chr4 91243721 91243742 -93044920 + AT_rich Low_complexity Low_complexity 1 21 0 306 0 0 0 chr4 91244600 91244634 -93044028 + (CA)n Simple_repeat Simple_repeat 1 34 0 1201 164 25 10 chr4 91244673 91244921 -93043741 - L1MA9 LINE L1 -141 6171 5923 496 279 221 11 chr4 91245636 91245826 -93042836 + MIR SINE MIR 6 235 -27 216 97 0 0 chr4 91245917 91245948 -93042714 + (CATA)n Simple_repeat Simple_repeat 4 34 0 577 123 0 0 chr4 91246216 91246297 -93042365 + AluSg/x SINE Alu 213 293 -17 42533 34 22 2 chr4 91247072 91253099 -93035563 + L1PA3 LINE L1 1 6155 0 25 65 0 0 chr4 91253207 91253253 -93035409 + AT_rich Low_complexity Low_complexity 1 46 0 605 209 52 0 chr4 91253524 91253639 -93035023 + FLAM_A SINE Alu 1 121 -12 29 47 0 0 chr4 91253644 91253687 -93034975 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr4 91253886 91253915 -93034747 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr4 91254002 91254036 -93034626 + AT_rich Low_complexity Low_complexity 1 34 0 206 331 102 31 chr4 91255386 91255513 -93033149 - L2 LINE L2 -438 2876 2741 494 226 111 138 chr4 91255528 91255646 -93033016 - MIR SINE MIR -2 260 140 1556 148 8 23 chr4 91255646 91255909 -93032753 - AluJo SINE Alu -11 301 43 494 226 111 138 chr4 91255909 91256051 -93032611 - MIR SINE MIR -122 140 7 2103 131 0 3 chr4 91256061 91256358 -93032304 - AluSx SINE Alu -16 296 1 6294 122 91 29 chr4 91256499 91256658 -93032004 - Tigger3b DNA MER2_type -1797 1231 1083 3285 135 35 16 chr4 91256658 91257175 -93031487 - MER1A DNA MER1_type 0 527 1 6294 122 91 29 chr4 91257175 91258174 -93030488 - Tigger3b DNA MER2_type -1945 1083 1 25 31 0 0 chr4 91258415 91258447 -93030215 + AT_rich Low_complexity Low_complexity 1 32 0 322 333 0 34 chr4 91259176 91259293 -93029369 + L2 LINE L2 3151 3263 -9 1266 180 46 0 chr4 91259293 91259510 -93029152 + AluJo SINE Alu 1 227 -85 646 144 253 0 chr4 91260017 91260163 -93028499 - MER5A DNA MER1_type 0 189 7 434 257 59 0 chr4 91260214 91260366 -93028296 - MER103 DNA DNA -3 163 3 22 0 0 0 chr4 91261098 91261120 -93027542 + AT_rich Low_complexity Low_complexity 1 22 0 208 237 194 11 chr4 91261280 91261373 -93027289 + L2 LINE L2 3195 3304 -9 21 0 0 0 chr4 91261922 91261943 -93026719 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr4 91263005 91263042 -93025620 + AT_rich Low_complexity Low_complexity 1 37 0 344 252 92 0 chr4 91263195 91263314 -93025348 + MLT1L LTR MaLR 169 298 -317 216 0 0 0 chr4 91263322 91263346 -93025316 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1709 182 0 7 chr4 91263349 91263635 -93025027 - AluJo SINE Alu -26 286 3 27 0 0 0 chr4 91264043 91264070 -93024592 + AT_rich Low_complexity Low_complexity 1 27 0 2353 81 3 0 chr4 91264812 91265107 -93023555 + AluY SINE Alu 1 296 -15 7251 46 5 0 chr4 91266026 91267187 -93021475 + L1PA5 LINE L1 5038 6202 0 523 290 75 23 chr4 91267337 91267449 -93021213 - L1ME LINE L1 -316 5805 5700 1294 203 94 19 chr4 91267449 91267769 -93020893 + MER2 DNA MER2_type 1 344 0 523 290 75 23 chr4 91267769 91267963 -93020699 - L1ME LINE L1 -421 5700 5483 1795 106 35 0 chr4 91268310 91268565 -93020097 + AluSc SINE Alu 3 266 -43 427 244 39 70 chr4 91269167 91269396 -93019266 - L1MEd LINE L1 -5002 1117 896 1042 156 2 0 chr4 91369609 91370289 -92918373 - ALR/Alpha Satellite centromeric 0 681 1 908 166 12 0 chr4 91370302 91370808 -92917854 - ALR/Alpha Satellite centromeric 0 512 1 1068 152 0 0 chr4 91370911 91371879 -92916783 - ALR/Alpha Satellite centromeric 0 968 1 1066 159 4 0 chr4 91371892 91373914 -92914748 - ALR/Alpha Satellite centromeric 0 2029 1 957 169 9 0 chr4 91373927 91374589 -92914073 - ALR/Alpha Satellite centromeric 0 667 1 1066 154 2 0 chr4 91374602 91375949 -92912713 - ALR/Alpha Satellite centromeric 0 1349 1 957 169 9 0 chr4 91375962 91376624 -92912038 - ALR/Alpha Satellite centromeric 0 667 1 1068 154 2 0 chr4 91376637 91377984 -92910678 - ALR/Alpha Satellite centromeric 0 1349 1 1066 159 1 0 chr4 91377997 91378948 -92909714 - ALR/Alpha Satellite centromeric 0 952 1 868 193 33 5 chr4 91478948 91479161 -92809501 - Charlie5 DNA MER1_type 0 2621 2403 300 70 0 0 chr4 91479161 91479204 -92809458 + (TG)n Simple_repeat Simple_repeat 2 44 0 521 137 0 0 chr4 91479204 91479277 -92809385 - AluJ SINE Alu -27 285 213 942 166 0 7 chr4 91479279 91479430 -92809232 - AluJ SINE Alu -162 150 1 682 191 11 56 chr4 91479430 91479541 -92809121 - Charlie5 DNA MER1_type -221 2403 2301 1828 156 0 17 chr4 91479541 91479836 -92808826 + AluSx SINE Alu 1 290 -22 682 191 11 56 chr4 91479836 91479902 -92808760 - Charlie5 DNA MER1_type -323 2301 2234 366 228 49 41 chr4 91479904 91480027 -92808635 - MER3 DNA MER1_type -41 168 45 1225 157 80 13 chr4 91480343 91480643 -92808019 + MER33 DNA MER1_type 1 320 -4 1563 139 7 61 chr4 91480807 91481087 -92807575 + AluJo SINE Alu 44 308 -4 767 348 99 14 chr4 91481122 91481547 -92807115 + L2 LINE L2 2834 3294 -19 285 314 26 13 chr4 91481982 91482135 -92806527 - L1M4 LINE L1 -1917 4229 4075 3518 152 13 13 chr4 91482146 91482763 -92805899 - L1PB4 LINE L1 -2 6154 5538 26 50 0 0 chr4 91483041 91483081 -92805581 + AT_rich Low_complexity Low_complexity 1 40 0 9212 32 1 0 chr4 91483194 91485034 -92803628 + L1PA3 LINE L1 4287 6127 -28 302 250 15 0 chr4 91485376 91485444 -92803218 + MIR SINE MIR 160 228 -34 205 234 64 0 chr4 91485626 91485684 -92802978 + (TA)n Simple_repeat Simple_repeat 2 55 -96 2289 116 0 3 chr4 91485684 91485995 -92802667 + AluSx SINE Alu 1 310 -2 205 234 64 0 chr4 91485995 91486077 -92802585 + (TA)n Simple_repeat Simple_repeat 55 151 0 * 348 204 29 29 chr4 91485998 91486135 -92802527 + (TATAA)n Simple_repeat Simple_repeat 4 140 0 24 32 0 0 chr4 91486138 91486169 -92802493 + AT_rich Low_complexity Low_complexity 1 31 0 687 181 0 9 chr4 91486854 91486970 -92801692 + FLAM_A SINE Alu 1 115 -18 191 36 36 0 chr4 91486973 91487001 -92801661 + (TAAAA)n Simple_repeat Simple_repeat 4 32 0 206 259 61 102 chr4 91487694 91487841 -92800821 - MIR SINE MIR -71 191 51 1643 123 4 40 chr4 91487891 91488143 -92800519 - AluJb SINE Alu -60 252 10 32 26 0 0 chr4 91488206 91488245 -92800417 + AT_rich Low_complexity Low_complexity 1 39 0 643 286 80 38 chr4 91490079 91490317 -92798345 + MIR SINE MIR 2 249 -13 537 294 125 40 chr4 91491614 91491910 -92796752 + L2 LINE L2 2531 2851 -463 502 304 14 7 chr4 91492010 91492148 -92796514 + MIR SINE MIR 86 224 -38 884 232 99 10 chr4 91492182 91492475 -92796187 + MER33 DNA MER1_type 6 324 0 616 287 121 5 chr4 91493051 91493274 -92795388 - MIR SINE MIR -12 250 2 1735 167 13 16 chr4 91494041 91494353 -92794309 + AluSx SINE Alu 1 311 -1 21 57 0 0 chr4 91495071 91495106 -92793556 + AT_rich Low_complexity Low_complexity 1 35 0 596 280 67 83 chr4 91495139 91495571 -92793091 + LTR16A LTR ERVL 16 440 -10 262 371 57 0 chr4 91495668 91495773 -92792889 - L2 LINE L2 -5 3308 3198 1166 247 97 69 chr4 91495934 91496265 -92792397 + L2 LINE L2 2434 2754 -559 1570 186 3 14 chr4 91496265 91496576 -92792086 + AluJb SINE Alu 1 308 0 1166 247 97 69 chr4 91496576 91497085 -92791577 + L2 LINE L2 2754 3313 0 2168 153 0 56 chr4 91497270 91497683 -92790979 + MLT1B LTR MaLR 1 390 0 2172 117 67 6 chr4 91497766 91498109 -92790553 - THE1B LTR MaLR 0 364 1 338 274 43 0 chr4 91498511 91498628 -92790034 - MER103 DNA DNA -42 124 3 2331 104 16 8 chr4 91498973 91499338 -92789324 + L1MA2 LINE L1 5937 6304 0 2534 53 7 0 chr4 91499434 91499733 -92788929 - AluY SINE Alu -10 301 1 271 344 74 0 chr4 91500988 91501110 -92787552 - L2 LINE L2 0 3313 3183 991 203 5 0 chr4 91501414 91501601 -92787061 + MER5A DNA MER1_type 1 188 -1 2181 106 3 0 chr4 91501634 91501916 -92786746 + AluSx SINE Alu 3 285 -27 237 196 0 0 chr4 91502028 91502079 -92786583 + (TG)n Simple_repeat Simple_repeat 2 52 0 2420 85 0 0 chr4 91504432 91504737 -92783925 - AluY SINE Alu -3 308 4 31 76 0 0 chr4 91505479 91505545 -92783117 + AT_rich Low_complexity Low_complexity 1 66 0 9143 156 22 51 chr4 91505656 91506819 -92781843 + L1MA8 LINE L1 3419 4614 -1677 2359 103 3 0 chr4 91506819 91507130 -92781532 + AluSx SINE Alu 1 312 0 9143 156 22 51 chr4 91507130 91508911 -92779751 + L1MA8 LINE L1 4614 6269 -22 353 245 0 53 chr4 91510014 91510108 -92778554 - L2 LINE L2 -2 3311 3223 1675 204 0 10 chr4 91510115 91510419 -92778243 + AluJo SINE Alu 6 306 -6 278 284 86 0 chr4 91510649 91510730 -92777932 + L2 LINE L2 3185 3272 0 225 368 92 23 chr4 91510851 91511025 -92777637 - MIR SINE MIR -70 192 7 435 254 8 25 chr4 91511053 91511175 -92777487 - MER103 DNA DNA 0 166 47 32 0 0 0 chr4 91511755 91511787 -92776875 + AT_rich Low_complexity Low_complexity 1 32 0 218 307 107 40 chr4 91512227 91512377 -92776285 + MIR SINE MIR 57 216 -46 22 0 0 0 chr4 91513396 91513418 -92775244 + AT_rich Low_complexity Low_complexity 1 22 0 288 204 0 0 chr4 91513488 91513537 -92775125 - L2 LINE L2 0 3313 3265 208 246 0 0 chr4 91515323 91515380 -92773282 + A-rich Low_complexity Low_complexity 1 57 0 216 158 0 0 chr4 91515775 91515813 -92772849 + (TG)n Simple_repeat Simple_repeat 2 39 0 573 175 22 66 chr4 91516269 91516406 -92772256 + MLT1D LTR MaLR 1 131 -374 815 203 199 35 chr4 91516504 91516790 -92771872 + MLT1D LTR MaLR 126 458 -47 472 299 12 18 chr4 91517499 91517666 -92770996 + MER5B DNA MER1_type 4 169 -9 2258 105 0 3 chr4 91518496 91518800 -92769862 + AluSq SINE Alu 11 313 0 230 208 19 0 chr4 91520881 91520934 -92767728 + (TA)n Simple_repeat Simple_repeat 1 54 0 2134 140 3 0 chr4 91521004 91521312 -92767350 + AluSx SINE Alu 1 309 -3 378 315 18 0 chr4 91521542 91521653 -92767009 - L2 LINE L2 -1 3312 3200 258 303 77 72 chr4 91521667 91521862 -92766800 + L3 LINE CR1 1203 1398 -179 2296 88 0 0 chr4 91522103 91522412 -92766250 + AluSg SINE Alu 1 309 0 3022 114 140 0 chr4 91522457 91522921 -92765741 + MER1A DNA MER1_type 1 529 0 1762 158 57 17 chr4 91522935 91523284 -92765378 + MLT1A1 LTR MaLR 1 363 -2 610 310 14 23 chr4 91524345 91524561 -92764101 + MIR SINE MIR 16 229 -33 22 0 0 0 chr4 91525118 91525140 -92763522 + AT_rich Low_complexity Low_complexity 1 22 0 878 209 134 81 chr4 91526063 91526383 -92762279 + LTR1B LTR ERV1 314 650 -176 213 39 0 0 chr4 91526385 91526411 -92762251 + (T)n Simple_repeat Simple_repeat 1 26 0 6410 18 0 0 chr4 91526415 91527148 -92761514 - L1HS LINE L1 0 6155 5423 321 83 0 0 chr4 91527149 91527197 -92761465 + L1P LINE L1 3656 3703 -2443 610 193 40 27 chr4 91527239 91527389 -92761273 + LTR1B LTR ERV1 675 826 0 1653 152 11 7 chr4 91527389 91527659 -92761003 + AluJo SINE Alu 31 301 -11 281 286 57 0 chr4 91527724 91527864 -92760798 - L1ME LINE L1 -438 5683 5536 231 114 0 0 chr4 91528254 91528289 -92760373 + (ATG)n Simple_repeat Simple_repeat 2 36 0 224 369 143 16 chr4 91529494 91529738 -92758924 - L3b LINE CR1 -1 1582 1308 377 238 202 36 chr4 91530762 91530930 -92757732 - MIR SINE MIR -18 244 49 23 0 0 0 chr4 91531266 91531289 -92757373 + AT_rich Low_complexity Low_complexity 1 23 0 240 294 156 9 chr4 91533647 91533756 -92754906 + L2 LINE L2 3189 3313 0 619 232 113 0 chr4 91533873 91534033 -92754629 - MER45A DNA AcHobo 0 178 1 21 0 0 0 chr4 91534601 91534622 -92754040 + AT_rich Low_complexity Low_complexity 1 21 0 458 282 73 23 chr4 91535824 91536044 -92752618 + L1ME LINE L1 5485 5715 -406 594 108 18 18 chr4 91536283 91536394 -92752268 + (GAAA)n Simple_repeat Simple_repeat 3 113 0 228 67 0 0 chr4 91536393 91536423 -92752239 + (GGGA)n Simple_repeat Simple_repeat 2 31 0 * 21581 157 43 13 chr4 91536425 91543148 -92745514 + L1M1 LINE L1 16 6960 -743 2218 113 0 3 chr4 91544006 91544297 -92744365 + AluSc SINE Alu 1 290 -19 1001 211 14 5 chr4 91544577 91544790 -92743872 + MLT2C1 LTR ERVL 1 215 -182 345 169 15 0 chr4 91544784 91544849 -92743813 - MLT2C1 LTR ERVL -313 84 19 * 209 336 19 19 chr4 91544999 91545106 -92743556 + L2 LINE L2 3167 3273 -40 764 229 0 24 chr4 91545336 91545506 -92743156 + FRAM SINE Alu 1 166 0 467 340 97 33 chr4 91545912 91546381 -92742281 + L2 LINE L2 2723 3237 -76 23 0 0 0 chr4 91547140 91547163 -92741499 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr4 91547210 91547241 -92741421 + AT_rich Low_complexity Low_complexity 1 31 0 251 371 202 5 chr4 91547807 91548217 -92740445 + L2 LINE L2 2437 2927 -387 1830 162 0 29 chr4 91548282 91548597 -92740065 - AluJo SINE Alu -6 306 1 208 389 77 10 chr4 91548879 91549009 -92739653 + MIR SINE MIR 3 142 -66 199 335 103 16 chr4 91549188 91549373 -92739289 + L2 LINE L2 2929 3129 -143 1824 160 0 14 chr4 91549734 91550027 -92738635 + AluJo SINE Alu 18 306 -6 257 366 45 15 chr4 91550666 91550800 -92737862 - MIR3 SINE MIR -34 174 37 1765 153 19 25 chr4 91550920 91551234 -92737428 - AluJo SINE Alu 0 312 1 1543 170 6 35 chr4 91551301 91551612 -92737050 + AluJo SINE Alu 3 304 -8 213 325 44 44 chr4 91553394 91553508 -92735154 - MIR SINE MIR -57 151 38 680 263 42 5 chr4 91553623 91553813 -92734849 - MIR SINE MIR 0 262 66 21 82 0 0 chr4 91555732 91555781 -92732881 + AT_rich Low_complexity Low_complexity 1 49 0 241 220 0 0 chr4 91555877 91555927 -92732735 + MIR SINE MIR 97 146 -62 895 260 82 45 chr4 91556047 91556451 -92732211 + MLT1K LTR MaLR 164 582 -6 242 317 97 28 chr4 91556571 91556716 -92731946 - L2 LINE L2 -1 3271 3117 317 250 59 0 chr4 91556768 91556836 -92731826 + MER91C DNA MER1_type 34 105 -35 182 37 37 0 chr4 91557480 91557507 -92731155 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 997 175 0 35 chr4 91558391 91558591 -92730071 + AluJo SINE Alu 120 312 0 1408 200 153 75 chr4 91558939 91559187 -92729475 - MLT1E LTR MaLR 0 593 366 2528 58 7 0 chr4 91559187 91559496 -92729166 + AluY SINE Alu 1 311 0 1408 200 153 75 chr4 91559496 91559737 -92728925 - MLT1E LTR MaLR -227 366 66 495 304 116 50 chr4 91559901 91560445 -92728217 - L2 LINE L2 -36 3277 2709 303 28 0 0 chr4 91561418 91561454 -92727208 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 183 237 0 0 chr4 91562888 91562926 -92725736 + L2 LINE L2 3219 3256 -16 408 291 29 0 chr4 91562930 91563033 -92725629 + MIR SINE MIR 101 206 -56 634 168 38 193 chr4 91563134 91563398 -92725264 - MER52A LTR ERV1 -847 173 5 228 35 0 0 chr4 91563398 91563427 -92725235 + (CAT)n Simple_repeat Simple_repeat 2 30 0 266 340 28 9 chr4 91563537 91563643 -92725019 - MIR3 SINE MIR -32 176 69 492 259 68 6 chr4 91563973 91564135 -92724527 + MER45A DNA AcHobo 4 175 -3 216 0 0 0 chr4 91565203 91565227 -92723435 + (CA)n Simple_repeat Simple_repeat 1 24 0 27 0 0 0 chr4 91566006 91566033 -92722629 + AT_rich Low_complexity Low_complexity 1 27 0 24 53 0 0 chr4 91567030 91567068 -92721594 + AT_rich Low_complexity Low_complexity 1 38 0 1638 164 0 48 chr4 91567143 91567454 -92721208 + AluJo SINE Alu 1 296 -16 1482 172 75 0 chr4 91567817 91568084 -92720578 - AluJb SINE Alu -19 293 7 671 176 0 8 chr4 91567972 91568091 -92720571 - AluJo/FLAM SINE Alu -184 118 1 180 0 0 0 chr4 91568107 91568127 -92720535 + (T)n Simple_repeat Simple_repeat 1 20 0 1503 159 0 50 chr4 91568511 91568631 -92720031 + AluJo SINE Alu 28 153 -159 2517 119 6 3 chr4 91568631 91568992 -92719670 - THE1B LTR MaLR -2 362 1 1503 159 0 50 chr4 91568992 91569148 -92719514 + AluJo SINE Alu 153 290 -22 184 245 128 78 chr4 91569241 91569343 -92719319 - MIR3 SINE MIR -6 202 96 1585 158 48 13 chr4 91569911 91570285 -92718377 - Charlie5 DNA MER1_type 0 2620 2234 473 198 0 0 chr4 91570293 91570399 -92718263 - Charlie5 DNA MER1_type -2490 122 17 562 275 179 5 chr4 91571022 91571229 -92717433 + MIR SINE MIR 1 243 -19 1697 174 0 3 chr4 91572457 91572745 -92715917 + AluJb SINE Alu 11 297 -15 180 158 0 0 chr4 91572745 91572783 -92715879 + GA-rich Low_complexity Low_complexity 1 38 0 1385 35 0 0 chr4 91573499 91573668 -92714994 + L1PA2 LINE L1 5987 6155 0 229 293 177 15 chr4 91575493 91575691 -92712971 + L2 LINE L2 3079 3308 -5 216 0 0 0 chr4 91576594 91576618 -92712044 + (TG)n Simple_repeat Simple_repeat 2 25 0 255 275 0 25 chr4 91577375 91577407 -92711255 + MER69 DNA AcHobo 2449 2480 -46 1725 163 50 0 chr4 91577407 91577689 -92710973 - AluJb SINE Alu -16 296 1 255 275 0 25 chr4 91577689 91577736 -92710926 + MER69 DNA AcHobo 2480 2526 0 21 36 0 0 chr4 91578285 91578313 -92710349 + AT_rich Low_complexity Low_complexity 1 28 0 762 147 31 0 chr4 91579305 91579434 -92709228 + FLAM_C SINE Alu 1 133 0 236 269 0 0 chr4 91581235 91581287 -92707375 - L2 LINE L2 0 3313 3262 319 215 9 9 chr4 91583611 91583718 -92704944 + (TA)n Simple_repeat Simple_repeat 2 108 0 2085 54 92 0 chr4 91583804 91584087 -92704575 - AluY SINE Alu 0 307 1 1466 305 118 8 chr4 91585219 91585711 -92702951 + MER115 DNA AcHobo 148 693 0 421 275 104 42 chr4 91586189 91586382 -92702280 - L2 LINE L2 0 3313 3109 25 65 0 0 chr4 91588307 91588353 -92700309 + AT_rich Low_complexity Low_complexity 1 46 0 232 245 35 126 chr4 91589251 91589370 -92699292 + MIR3 SINE MIR 68 174 -34 3721 187 59 18 chr4 91589370 91590163 -92698499 + LTR1B LTR ERV1 1 826 0 232 245 35 126 chr4 91590163 91590186 -92698476 + MIR3 SINE MIR 174 197 -11 284 338 81 7 chr4 91590337 91590485 -92698177 - MIR3 SINE MIR -9 199 41 845 293 62 5 chr4 91590507 91590879 -92697783 + MER113 DNA MER1_type? 7 399 -122 265 207 134 0 chr4 91591784 91591866 -92696796 + HAL1 LINE L1 51 143 -2364 895 308 71 48 chr4 91591944 91592736 -92695926 + HAL1 LINE L1 1579 2388 -119 181 325 70 26 chr4 91594846 91594960 -92693702 - MIR SINE MIR -51 211 93 213 337 90 67 chr4 91596577 91596998 -92691664 + L2 LINE L2 2545 2975 -339 367 280 53 45 chr4 91597173 91597305 -92691357 + L2 LINE L2 3181 3313 0 183 269 0 75 chr4 91601579 91601646 -92687016 + L2 LINE L2 3248 3309 -4 309 292 217 0 chr4 91601718 91601838 -92686824 - MIR SINE MIR -70 192 47 23 0 0 0 chr4 91605273 91605296 -92683366 + AT_rich Low_complexity Low_complexity 1 23 0 205 338 0 28 chr4 91605649 91605720 -92682942 + MIR SINE MIR 12 80 -182 288 0 0 0 chr4 91606367 91606399 -92682263 + (CA)n Simple_repeat Simple_repeat 2 33 0 2204 100 0 7 chr4 91609280 91609590 -92679072 - AluY SINE Alu 0 311 4 259 118 0 78 chr4 91609590 91609641 -92679021 - MIR SINE MIR -117 145 99 247 337 95 21 chr4 91609899 91610089 -92678573 - L3 LINE CR1 -11 1566 1363 2200 57 46 4 chr4 91610099 91610379 -92678283 - AluY SINE Alu -19 292 1 6513 134 9 0 chr4 91610829 91611816 -92676846 + Tigger1 DNA MER2_type 51 1046 -1372 5010 113 25 8 chr4 91611817 91612570 -92676092 + Tigger1 DNA MER2_type 1649 2414 -4 695 304 68 66 chr4 91612710 91613121 -92675541 - L3 LINE CR1 -295 1282 871 189 94 0 0 chr4 91614045 91614077 -92674585 + (A)n Simple_repeat Simple_repeat 1 32 0 3136 121 8 14 chr4 91614600 91615098 -92673564 + L1MC1 LINE L1 5820 6314 -19 486 337 23 11 chr4 91616042 91616217 -92672445 + MER5A DNA MER1_type 12 188 -1 275 200 15 0 chr4 91618459 91618524 -92670138 - L1ME2 LINE L1 -20 6144 6079 250 322 219 32 chr4 91618561 91618971 -92669691 + L2 LINE L2 2808 3294 -19 230 216 20 0 chr4 91619108 91619159 -92669503 - L2 LINE L2 0 3313 3262 26 0 0 0 chr4 91620848 91620874 -92667788 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr4 91621053 91621076 -92667586 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 91621749 91621777 -92666885 + AT_rich Low_complexity Low_complexity 1 28 0 29 60 0 0 chr4 91621989 91622039 -92666623 + AT_rich Low_complexity Low_complexity 1 50 0 491 239 0 0 chr4 91623373 91623465 -92665197 + Tigger7 DNA MER2_type 2395 2486 -1 21 0 0 0 chr4 91626154 91626175 -92662487 + AT_rich Low_complexity Low_complexity 1 21 0 222 182 55 0 chr4 91626386 91626441 -92662221 + (TATATG)n Simple_repeat Simple_repeat 5 62 0 620 303 54 0 chr4 91626446 91626631 -92662031 - MIR SINE MIR -57 205 11 1713 162 3 18 chr4 91626943 91627263 -92661399 - AluJo SINE Alu 0 319 4 682 132 9 0 chr4 91627267 91627373 -92661289 - FLAM_A SINE Alu -20 122 16 225 65 0 0 chr4 91627576 91627607 -92661055 + (CA)n Simple_repeat Simple_repeat 2 32 0 235 333 83 0 chr4 91627677 91627761 -92660901 - L2 LINE L2 -40 3273 3183 269 314 62 95 chr4 91627879 91628121 -92660541 - L2 LINE L2 -342 2972 2739 2351 54 0 3 chr4 91629089 91629386 -92659276 - AluY SINE Alu -15 296 1 191 0 103 0 chr4 91630719 91630758 -92657904 + A-rich Low_complexity Low_complexity 1 43 0 392 269 14 14 chr4 91631202 91631343 -92657319 + L1ME1 LINE L1 5910 6050 -116 374 143 45 98 chr4 91631426 91631538 -92657124 + L1ME1 LINE L1 6043 6148 -18 394 304 130 16 chr4 91632052 91632236 -92656426 - MIR SINE MIR -12 250 46 2062 110 4 0 chr4 91632249 91632556 -92656106 - AluSx SINE Alu 0 308 1 294 50 0 0 chr4 91632945 91632985 -92655677 + (TG)n Simple_repeat Simple_repeat 1 40 0 * 330 26 0 0 chr4 91632984 91633023 -92655639 + (GA)n Simple_repeat Simple_repeat 1 39 0 316 270 6 119 chr4 91633118 91633277 -92655385 + MIR SINE MIR 94 234 -28 1179 196 73 51 chr4 91634987 91635262 -92653400 - AluJo SINE Alu -31 281 1 256 290 75 11 chr4 91635572 91635665 -92652997 - L2 LINE L2 -6 3266 3168 192 254 63 16 chr4 91635700 91635763 -92652899 + MIR SINE MIR 195 260 -2 300 200 0 0 chr4 91638217 91638282 -92650380 + A-rich Low_complexity Low_complexity 1 65 0 1044 198 33 4 chr4 91638697 91638939 -92649723 + L1MB5 LINE L1 5926 6174 0 32 43 0 0 chr4 91639638 91639684 -92648978 + AT_rich Low_complexity Low_complexity 1 46 0 679 170 20 15 chr4 91640143 91640411 -92648251 + AluJo SINE Alu 1 309 0 210 71 0 0 chr4 91642430 91642458 -92646204 + (GA)n Simple_repeat Simple_repeat 1 28 0 221 283 0 0 chr4 91642458 91642511 -92646151 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 560 245 75 27 chr4 91642536 91642724 -92645938 + MLT1E3 LTR MaLR 356 552 -72 274 303 13 0 chr4 91643510 91643586 -92645076 - MIR SINE MIR -54 208 132 771 251 28 28 chr4 91645114 91645136 -92643526 - MLT1E1 LTR MaLR -439 215 194 2032 152 30 25 chr4 91645136 91645498 -92643164 + THE1B LTR MaLR 1 364 0 771 251 28 28 chr4 91645498 91645690 -92642972 - MLT1E1 LTR MaLR -459 195 1 195 303 31 164 chr4 91646898 91647185 -92641477 - L2 LINE L2 -8 3264 3016 318 316 105 8 chr4 91648298 91648431 -92640231 - L2 LINE L2 0 3272 3127 182 255 78 0 chr4 91649945 91649996 -92638666 + MIR3 SINE MIR 135 189 -19 463 245 14 48 chr4 91650752 91650899 -92637763 - L2 LINE L2 0 3313 3172 223 247 10 93 chr4 91651160 91651257 -92637405 - L2 LINE L2 -17 3296 3208 1880 186 151 32 chr4 91651352 91651857 -92636805 + MLT1F1 LTR MaLR 3 567 0 15809 147 20 8 chr4 91652222 91654909 -92633753 - Tigger2 DNA MER2_type 0 2718 1 21 82 0 0 chr4 91656739 91656788 -92631874 + AT_rich Low_complexity Low_complexity 1 49 0 181 247 0 72 chr4 91657397 91657494 -92631168 + MER5C DNA MER1_type 217 306 -18 2119 109 10 0 chr4 91658848 91659142 -92629520 - AluSx SINE Alu -15 297 1 620 233 29 24 chr4 91659285 91659491 -92629171 - L1ME3A LINE L1 -41 6129 5923 302 282 0 26 chr4 91659912 91659990 -92628672 + MIR SINE MIR 116 191 -71 267 133 0 0 chr4 91660075 91660120 -92628542 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 394 258 168 13 chr4 91661320 91661475 -92627187 - MIR SINE MIR -70 192 14 610 267 186 19 chr4 91662391 91662601 -92626061 + MIR SINE MIR 18 262 0 2007 213 55 0 chr4 91663292 91663696 -92624966 + MSTB LTR MaLR 1 426 0 1537 252 73 9 chr4 91664301 91664726 -92623936 + MLT2B1 LTR ERVL 5 456 -64 277 236 19 0 chr4 91664728 91664834 -92623828 + (TA)n Simple_repeat Simple_repeat 2 109 0 272 170 0 0 chr4 91664847 91664900 -92623762 + MLT2B1 LTR ERVL 466 518 -2 13678 26 0 7 chr4 91665184 91667628 -92621034 + L1PA3 LINE L1 3758 6155 0 523 224 132 54 chr4 91668491 91668696 -92619966 - L2 LINE L2 0 3313 3093 490 303 59 7 chr4 91668757 91668909 -92619753 - L2 LINE L2 -510 2804 2645 398 281 87 70 chr4 91668969 91669325 -92619337 + MLT1I LTR MaLR 40 401 -8 427 250 120 0 chr4 91669333 91669441 -92619221 - L2 LINE L2 -678 2636 2516 1586 179 134 6 chr4 91671383 91671734 -92616928 + MSTD LTR MaLR 1 396 0 228 328 15 0 chr4 91671784 91671851 -92616811 + L2 LINE L2 3204 3271 -1 394 209 9 9 chr4 91673619 91673729 -92614933 + GA-rich Low_complexity Low_complexity 3 112 0 843 299 105 70 chr4 91673833 91674783 -92613879 - L2 LINE L2 -363 2951 1968 21 0 0 0 chr4 91674962 91674983 -92613679 + AT_rich Low_complexity Low_complexity 1 21 0 280 241 223 18 chr4 91675493 91675605 -92613057 + L2 LINE L2 3138 3272 0 181 288 15 61 chr4 91677568 91677634 -92611028 - L2 LINE L2 -12 3301 3239 27 49 0 0 chr4 91679460 91679501 -92609161 + AT_rich Low_complexity Low_complexity 1 41 0 505 307 23 45 chr4 91680112 91680324 -92608338 - MIR SINE MIR -55 207 2 3353 70 46 19 chr4 91681245 91681719 -92606943 - L1PB2 LINE L1 -2 6149 5663 1285 121 72 0 chr4 91681819 91682026 -92606636 - MER46B DNA MER2_type -139 97 1 872 153 51 0 chr4 91682033 91682209 -92606453 + MER53 DNA DNA 3 187 -2 3822 88 24 0 chr4 91682922 91683458 -92605204 - L1PB2 LINE L1 -94 6057 5509 267 256 45 13 chr4 91684158 91684259 -92604403 + MIR SINE MIR 91 199 -9 21 0 0 0 chr4 91684756 91684777 -92603885 + AT_rich Low_complexity Low_complexity 1 21 0 276 325 26 35 chr4 91686447 91686561 -92602101 + L2 LINE L2 3181 3293 -20 1352 184 3 25 chr4 91688415 91688697 -92599965 - AluJo SINE Alu -22 290 15 1743 188 102 8 chr4 91689184 91689546 -92599116 + MSTD LTR MaLR 1 396 0 22 0 0 0 chr4 91691036 91691058 -92597604 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 91692909 91692930 -92595732 + AT_rich Low_complexity Low_complexity 1 21 0 24 67 0 0 chr4 91693029 91693074 -92595588 + AT_rich Low_complexity Low_complexity 1 45 0 597 235 150 51 chr4 91694281 91694515 -92594147 + MIR SINE MIR 6 262 0 363 200 138 15 chr4 91694886 91695016 -92593646 - MER103 DNA DNA -10 156 11 22 0 0 0 chr4 91695266 91695288 -92593374 + AT_rich Low_complexity Low_complexity 1 22 0 212 196 22 0 chr4 91696596 91696642 -92592020 - L2 LINE L2 -5 3308 3262 184 302 36 50 chr4 91700633 91700772 -92587890 + L2 LINE L2 3080 3216 -97 290 129 16 0 chr4 91700774 91700836 -92587826 + (TA)n Simple_repeat Simple_repeat 1 63 0 2126 110 0 3 chr4 91700836 91701126 -92587536 - AluSg SINE Alu -21 289 1 25 65 0 0 chr4 91701360 91701406 -92587256 + AT_rich Low_complexity Low_complexity 1 46 0 340 325 89 6 chr4 91701414 91701583 -92587079 - MIR SINE MIR -53 209 27 216 200 0 20 chr4 91702093 91702143 -92586519 + (TATG)n Simple_repeat Simple_repeat 2 50 0 183 129 32 0 chr4 91703179 91703210 -92585452 + MIR SINE MIR 120 151 -111 300 167 0 19 chr4 91706231 91706285 -92582377 - MIR SINE MIR -75 133 81 2351 63 3 7 chr4 91706751 91707053 -92581609 - AluY SINE Alu -10 301 1 1185 176 85 88 chr4 91707153 91707358 -92581304 - MLT1A2 LTR MaLR 0 374 169 2383 86 3 3 chr4 91707358 91707671 -92580991 - AluSq SINE Alu 0 313 1 1185 176 85 88 chr4 91707671 91707840 -92580822 - MLT1A2 LTR MaLR -205 169 1 25 0 0 0 chr4 91708394 91708419 -92580243 + AT_rich Low_complexity Low_complexity 1 25 0 219 140 18 70 chr4 91708579 91708636 -92580026 + GA-rich Low_complexity Low_complexity 1 54 0 561 260 36 35 chr4 91709151 91709537 -92579125 - LTR16A1 LTR ERVL 0 457 4 23 68 0 0 chr4 91709733 91709777 -92578885 + AT_rich Low_complexity Low_complexity 1 44 0 323 282 159 18 chr4 91710342 91710505 -92578157 + MIR SINE MIR 16 201 -61 522 236 93 84 chr4 91710656 91710881 -92577781 + MER102b DNA MER1_type 115 341 0 402 212 133 18 chr4 91710959 91711072 -92577590 + MIR SINE MIR 17 142 -66 196 146 49 0 chr4 91711106 91711147 -92577515 + MIR SINE MIR 95 137 -71 261 0 0 0 chr4 91711753 91711782 -92576880 + (A)n Simple_repeat Simple_repeat 1 29 0 21 0 0 0 chr4 91714257 91714278 -92574384 + AT_rich Low_complexity Low_complexity 1 21 0 308 154 77 0 chr4 91715437 91715502 -92573160 + L1MCa LINE L1 1995 2064 -4362 * 314 285 44 82 chr4 91715444 91715602 -92573060 - L1MC4 LINE L1 -1340 6702 6551 1752 171 3 3 chr4 91715608 91715900 -92572762 + AluJb SINE Alu 1 292 -20 24 0 0 0 chr4 91715903 91715927 -92572735 + AT_rich Low_complexity Low_complexity 1 24 0 43 49 0 12 chr4 91719269 91719289 -92569373 + AT_rich Low_complexity Low_complexity 1 20 -61 2003 112 17 10 chr4 91719289 91719584 -92569078 + AluSq SINE Alu 11 307 -6 43 49 0 12 chr4 91719584 91719645 -92569017 + AT_rich Low_complexity Low_complexity 20 81 0 293 309 64 0 chr4 91721622 91721732 -92566930 - MIR SINE MIR 0 262 146 261 83 0 0 chr4 91722211 91722247 -92566415 + (TA)n Simple_repeat Simple_repeat 2 37 0 2186 110 7 3 chr4 91722247 91722539 -92566123 - AluSx SINE Alu -19 293 1 27 0 0 0 chr4 91723318 91723345 -92565317 + AT_rich Low_complexity Low_complexity 1 27 0 1325 178 100 8 chr4 91727287 91727528 -92561134 + Tigger7 DNA MER2_type 2 264 -469 513 218 0 10 chr4 91727528 91727629 -92561033 + Tigger7 DNA MER2_type 2392 2491 0 26 0 0 0 chr4 91727788 91727814 -92560848 + AT_rich Low_complexity Low_complexity 1 26 0 462 233 8 33 chr4 91730287 91730407 -92558255 - MIR SINE MIR -104 158 42 279 133 0 0 chr4 91731915 91731960 -92556702 + (CA)n Simple_repeat Simple_repeat 1 45 0 204 103 77 0 chr4 91732424 91732463 -92556199 + GA-rich Low_complexity Low_complexity 5 46 0 32 0 0 0 chr4 91734707 91734739 -92553923 + AT_rich Low_complexity Low_complexity 1 32 0 204 238 0 0 chr4 91734827 91734869 -92553793 + GA-rich Low_complexity Low_complexity 1 42 0 240 86 0 0 chr4 91735418 91735453 -92553209 + (TGGGGG)n Simple_repeat Simple_repeat 2 36 0 469 262 87 7 chr4 91736631 91736780 -92551882 + MIR3 SINE MIR 41 201 -7 504 295 66 11 chr4 91736967 91737150 -92551512 + MIR SINE MIR 20 212 -50 658 220 144 0 chr4 91737220 91737393 -92551269 + MER3 DNA MER1_type 1 198 -11 407 249 54 65 chr4 91737522 91737707 -92550955 + L2 LINE L2 3121 3303 -10 693 242 33 97 chr4 91738162 91738492 -92550170 + L2 LINE L2 3005 3313 0 443 223 19 0 chr4 91739352 91739455 -92549207 - MLT1K LTR MaLR -2 586 482 760 171 97 23 chr4 91739469 91739644 -92549018 - MIR SINE MIR 0 262 75 642 283 145 31 chr4 91739729 91740047 -92548615 - MLT1K LTR MaLR -165 423 70 931 154 0 0 chr4 91741057 91741206 -92547456 - FAM SINE Alu -1 48 1 278 230 7 20 chr4 91741378 91741530 -92547132 + GA-rich Low_complexity Low_complexity 3 152 0 234 240 123 39 chr4 91742770 91742900 -92545762 + MLT1H LTR MaLR 285 533 -16 384 235 111 62 chr4 91743324 91743486 -92545176 - MIR SINE MIR -1 261 92 184 366 134 26 chr4 91743622 91743816 -92544846 - L2 LINE L2 -544 2770 2556 201 302 0 0 chr4 91744135 91744198 -92544464 + L2 LINE L2 3251 3313 0 539 317 11 65 chr4 91745576 91745838 -92542824 + MIR SINE MIR 13 260 -2 2113 133 12 12 chr4 91745935 91746267 -92542395 + MER7A DNA MER2_type 2 331 -15 696 122 0 0 chr4 91747801 91747908 -92540754 - L1PA13 LINE L1 -8 6155 6049 1396 104 5 5 chr4 91747910 91748111 -92540551 + L1PA12 LINE L1 5747 5947 -221 1571 154 121 0 chr4 91748466 91748771 -92539891 + MER2 DNA MER2_type 2 343 -1 240 100 0 0 chr4 91749088 91749128 -92539534 + (CA)n Simple_repeat Simple_repeat 2 41 0 263 245 0 0 chr4 91749352 91749405 -92539257 - MIR SINE MIR -66 142 90 312 337 16 33 chr4 91749505 91749689 -92538973 + MIR SINE MIR 66 246 -16 18972 170 47 64 chr4 91751061 91751419 -92537243 - L1MA5 LINE L1 0 7719 7356 1973 167 111 10 chr4 91751419 91751808 -92536854 + MSTA LTR MaLR 1 428 0 18972 170 47 64 chr4 91751808 91756092 -92532570 - L1MA5 LINE L1 -363 7356 2999 1383 236 11 3 chr4 91756092 91756376 -92532286 - AluJb SINE Alu -26 286 1 855 163 0 0 chr4 91756383 91756512 -92532150 - FLAM_C SINE Alu -14 129 1 18972 170 47 64 chr4 91756512 91759584 -92529078 - L1MA5 LINE L1 -4726 2993 19 6650 191 25 7 chr4 91759585 91761073 -92527589 - L1 LINE L1 -1769 5079 3565 6778 95 15 13 chr4 91761073 91767155 -92521507 - L1PA6 LINE L1 -2 6152 11 3179 217 16 33 chr4 91767166 91767297 -92521365 - L1 LINE L1 -3277 3571 3439 2428 67 0 3 chr4 91767297 91767596 -92521066 + AluY SINE Alu 1 298 -13 3179 217 16 33 chr4 91767596 91768872 -92519790 - L1 LINE L1 -3409 3439 2186 3166 143 13 6 chr4 91768900 91769433 -92519229 - L1PA16 LINE L1 -18 6148 5612 2013 159 56 8 chr4 91769446 91770088 -92518574 + L1PA16 LINE L1 4920 5598 -568 * 3233 193 34 50 chr4 91770080 91770929 -92517733 - L1 LINE L1 -4667 2182 1347 2181 117 0 7 chr4 91771104 91771404 -92517258 - AluSc SINE Alu -7 302 5 25 0 0 0 chr4 91772324 91772349 -92516313 + AT_rich Low_complexity Low_complexity 1 25 0 234 208 0 0 chr4 91772399 91772452 -92516210 + CT-rich Low_complexity Low_complexity 3 55 0 1121 188 80 16 chr4 91772454 91772704 -92515958 - AluJo SINE Alu 0 312 47 385 326 112 31 chr4 91772910 91773168 -92515494 + L3 LINE CR1 143 421 -1156 381 252 55 105 chr4 91773721 91773959 -92514703 + Charlie2 DNA MER1_type 98 323 -2459 1984 222 61 15 chr4 91773963 91774774 -92513888 + Charlie2 DNA MER1_type 1856 2862 0 30 69 0 0 chr4 91775185 91775243 -92513419 + AT_rich Low_complexity Low_complexity 1 58 0 214 387 0 0 chr4 91776273 91776348 -92512314 + L3 LINE CR1 1005 1079 -498 535 341 104 15 chr4 91776453 91776790 -92511872 + L3 LINE CR1 1095 1461 -116 242 326 54 16 chr4 91776979 91777108 -92511554 - L2 LINE L2 0 3272 3139 628 312 68 25 chr4 91777243 91777666 -92510996 + L2 LINE L2 2560 2997 -275 424 275 0 18 chr4 91777711 91777820 -92510842 - L2 LINE L2 -3 3310 3204 215 129 14 71 chr4 91778092 91778162 -92510500 + (TATATG)n Simple_repeat Simple_repeat 4 69 0 221 0 35 0 chr4 91778190 91778219 -92510443 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 7603 18 0 0 chr4 91778221 91779881 -92508781 - L1PA2 LINE L1 -15 6140 4481 21 0 0 0 chr4 91779948 91779969 -92508693 + AT_rich Low_complexity Low_complexity 1 21 0 287 223 80 54 chr4 91781799 91781911 -92506751 + L2 LINE L2 3199 3313 0 4981 146 10 39 chr4 91782287 91783185 -92505477 + L1PA16 LINE L1 5294 6165 -1 255 218 18 0 chr4 91783278 91783333 -92505329 + CT-rich Low_complexity Low_complexity 1 56 0 23 0 0 0 chr4 91785115 91785138 -92503524 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr4 91785188 91785214 -92503448 + AT_rich Low_complexity Low_complexity 1 26 0 393 391 42 5 chr4 91786926 91787115 -92501547 - MIR SINE MIR -48 214 19 394 195 180 23 chr4 91787296 91787424 -92501238 + MIR SINE MIR 90 237 -25 562 303 68 9 chr4 91787887 91788108 -92500554 - MIR SINE MIR 0 262 29 351 0 0 0 chr4 91788946 91788985 -92499677 + (TG)n Simple_repeat Simple_repeat 2 40 0 300 248 50 58 chr4 91790203 91790324 -92498338 + L2 LINE L2 3186 3305 -8 2274 102 0 0 chr4 91790894 91791189 -92497473 - AluSx SINE Alu -17 295 1 22 0 0 0 chr4 91792177 91792199 -92496463 + AT_rich Low_complexity Low_complexity 1 22 0 210 37 0 0 chr4 91792469 91792496 -92496166 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2303 67 0 7 chr4 91792521 91792818 -92495844 - AluY SINE Alu -16 295 1 1365 247 73 85 chr4 91793499 91793682 -92494980 - Zaphod DNA AcHobo -2097 1934 1750 1723 137 56 51 chr4 91793682 91794055 -92494607 + THE1C LTR MaLR 1 375 0 1365 247 73 85 chr4 91794055 91794156 -92494506 - Zaphod DNA AcHobo -2281 1750 1649 921 114 0 132 chr4 91794156 91794326 -92494336 + L1MB3 LINE L1 5986 6122 -61 2371 78 0 0 chr4 91794326 91794621 -92494041 + AluY SINE Alu 5 299 -12 921 114 0 132 chr4 91794621 91794670 -92493992 + L1MB3 LINE L1 6122 6176 -7 1365 247 73 85 chr4 91794670 91795205 -92493457 - Zaphod DNA AcHobo -2382 1649 1124 527 192 29 0 chr4 91795218 91795322 -92493340 - FLAM_A SINE Alu -12 130 24 502 210 22 65 chr4 91795342 91795571 -92493091 - Zaphod DNA AcHobo -2925 1106 888 407 304 76 49 chr4 91795708 91795932 -92492730 + ERVL LTR ERVL 4793 5022 -742 554 268 0 14 chr4 91796106 91796244 -92492418 + ERVL LTR ERVL 5197 5332 -432 1044 269 171 26 chr4 91796449 91796951 -92491711 + LTR50 LTR ERVL 213 787 -8 1734 249 91 36 chr4 91796988 91797773 -92490889 - Zaphod DNA AcHobo -3162 869 3 25 51 0 0 chr4 91798745 91798784 -92489878 + AT_rich Low_complexity Low_complexity 1 39 0 26 0 0 0 chr4 91798879 91798905 -92489757 + AT_rich Low_complexity Low_complexity 1 26 0 2475 43 0 10 chr4 91799127 91799428 -92489234 - AluY SINE Alu -13 298 1 522 297 36 31 chr4 91800570 91800765 -92487897 + MIR SINE MIR 2 197 -65 667 229 45 25 chr4 91801019 91801176 -92487486 - FRAM SINE Alu -6 160 1 23 33 0 0 chr4 91801531 91801561 -92487101 + AT_rich Low_complexity Low_complexity 1 30 0 1054 154 50 23 chr4 91801630 91801850 -92486812 - L1MB8 LINE L1 -10 6168 5943 344 305 120 37 chr4 91801988 91802339 -92486323 - L1M4 LINE L1 -3650 2496 2117 22 0 0 0 chr4 91802697 91802719 -92485943 + AT_rich Low_complexity Low_complexity 1 22 0 338 200 217 17 chr4 91802920 91803040 -92485622 + MIR SINE MIR 17 160 -102 229 343 119 43 chr4 91803204 91803531 -92485131 + L2 LINE L2 2027 2378 -936 180 0 0 0 chr4 91803543 91803563 -92485099 + (TTG)n Simple_repeat Simple_repeat 2 21 0 974 161 0 0 chr4 91803565 91803708 -92484954 - FRAM SINE Alu -30 146 4 4779 133 54 42 chr4 91803744 91804623 -92484039 + L1PA15 LINE L1 4448 5347 -818 1862 155 44 0 chr4 91804623 91804920 -92483742 + AluSg SINE Alu 1 310 0 4779 133 54 42 chr4 91804920 91805750 -92482912 + L1PA15 LINE L1 5347 6165 0 193 275 75 50 chr4 91806550 91806630 -92482032 - MIR SINE MIR -83 179 98 235 286 33 0 chr4 91807610 91807701 -92480961 + (TA)n Simple_repeat Simple_repeat 2 95 0 1123 175 49 22 chr4 91807721 91807944 -92480718 + AluJo SINE Alu 74 302 -10 21 36 0 0 chr4 91807963 91807991 -92480671 + AT_rich Low_complexity Low_complexity 1 28 0 407 132 0 92 chr4 91808016 91808092 -92480570 - LTR33 LTR ERVL -8 513 445 798 304 8 17 chr4 91808205 91808445 -92480217 - LTR33 LTR ERVL -283 238 1 1515 237 66 72 chr4 91809811 91810356 -92478306 - MLT1F1 LTR MaLR 0 567 1 217 282 68 26 chr4 91810358 91810475 -92478187 + L2 LINE L2 2292 2413 -901 222 37 0 0 chr4 91810511 91810538 -92478124 + (TG)n Simple_repeat Simple_repeat 1 27 0 752 309 57 9 chr4 91812546 91812942 -92475720 + L2 LINE L2 1233 1706 -1608 277 282 13 0 chr4 91813630 91813708 -92474954 + MIR3 SINE MIR 125 203 -5 593 279 70 25 chr4 91813765 91813966 -92474696 - MIR SINE MIR -38 224 15 887 347 107 36 chr4 91815609 91816576 -92472086 + L2 LINE L2 2269 3308 -5 610 204 134 0 chr4 91816783 91816955 -92471707 + L1MA9 LINE L1 6074 6268 -44 373 314 55 55 chr4 91817553 91817808 -92470854 - L2 LINE L2 -1 3312 3058 785 200 38 6 chr4 91817815 91817975 -92470687 - MLT1C LTR MaLR -3 464 300 720 326 135 20 chr4 91818118 91818517 -92470145 - MLT1J LTR MaLR -64 447 3 25 105 0 0 chr4 91819109 91819204 -92469458 + AT_rich Low_complexity Low_complexity 1 95 0 273 294 163 12 chr4 91819405 91819565 -92469097 - MIR SINE MIR 0 262 79 270 331 60 8 chr4 91820762 91820895 -92467767 + L2 LINE L2 3158 3297 -16 337 305 38 30 chr4 91821143 91821274 -92467388 + MIR SINE MIR 10 141 -121 977 304 36 18 chr4 91822541 91822877 -92465785 + LTR16C LTR ERVL 150 491 0 258 200 18 0 chr4 91822952 91823007 -92465655 + (TTCA)n Simple_repeat Simple_repeat 3 58 0 1907 166 0 25 chr4 91823073 91823393 -92465269 + AluSx SINE Alu 1 312 0 24 32 0 0 chr4 91824036 91824067 -92464595 + AT_rich Low_complexity Low_complexity 1 31 0 180 256 47 0 chr4 91824222 91824265 -92464397 - L3 LINE CR1 -30 1547 1503 27 0 0 0 chr4 91825187 91825214 -92463448 + AT_rich Low_complexity Low_complexity 1 27 0 2484 67 0 0 chr4 91825435 91825735 -92462927 - AluY SINE Alu -11 300 1 182 206 0 0 chr4 91826091 91826125 -92462537 - MIR SINE MIR -12 250 217 215 246 62 0 chr4 91827104 91827169 -92461493 - MIR SINE MIR -80 182 114 236 333 99 18 chr4 91827825 91827996 -92460666 + MIR SINE MIR 71 255 -7 249 311 54 0 chr4 91828059 91828133 -92460529 + L2 LINE L2 3171 3248 -24 325 329 36 50 chr4 91828145 91828364 -92460298 + L2 LINE L2 2837 3052 -261 201 121 0 0 chr4 91828368 91828401 -92460261 + (CA)n Simple_repeat Simple_repeat 2 34 0 1270 211 163 88 chr4 91828416 91828999 -92459663 + MER76 LTR ERV 4 630 -58 432 299 24 30 chr4 91829023 91829190 -92459472 + L2 LINE L2 3128 3293 -20 1605 158 0 0 chr4 91829543 91829790 -92458872 - AluSx SINE Alu -24 288 42 918 199 90 20 chr4 91829924 91830125 -92458537 + MER58C DNA MER1_type 1 215 0 2623 283 91 41 chr4 91830737 91831380 -92457282 - L2 LINE L2 -7 3306 2696 2293 140 42 15 chr4 91831380 91831780 -92456882 + LTR57 LTR ERVL 1 411 0 2623 283 91 41 chr4 91831780 91832505 -92456157 - L2 LINE L2 -617 2696 1858 690 301 168 8 chr4 91833053 91833435 -92455227 - L2 LINE L2 -1558 1756 1314 2332 98 0 16 chr4 91833821 91834138 -92454524 + AluSx SINE Alu 1 312 0 259 307 35 44 chr4 91835098 91835212 -92453450 + MIR3 SINE MIR 91 203 -5 536 286 75 51 chr4 91835441 91835600 -92453062 - L2 LINE L2 0 3313 3142 351 0 0 0 chr4 91835600 91835639 -92453023 + (TG)n Simple_repeat Simple_repeat 2 40 0 536 286 75 51 chr4 91835639 91835773 -92452889 - L2 LINE L2 -171 3142 3013 197 226 0 19 chr4 91835872 91835925 -92452737 - L2 LINE L2 -103 3210 3159 380 333 12 37 chr4 91835947 91836109 -92452553 + MIR SINE MIR 38 195 -67 21 71 0 0 chr4 91836405 91836447 -92452215 + AT_rich Low_complexity Low_complexity 1 42 0 185 71 0 0 chr4 91838781 91838809 -92449853 + L2 LINE L2 3285 3312 -1 381 345 78 17 chr4 91839072 91839304 -92449358 + MLT1H LTR MaLR 127 372 -177 249 290 0 0 chr4 91839410 91839472 -92449190 + CT-rich Low_complexity Low_complexity 4 65 0 208 200 0 22 chr4 91839478 91839523 -92449139 - MIR SINE MIR 0 262 219 376 179 21 0 chr4 91840010 91840022 -92448640 + (TA)n Simple_repeat Simple_repeat 1 11 -86 2361 78 0 0 chr4 91840022 91840317 -92448345 + AluY SINE Alu 1 295 -16 376 179 21 0 chr4 91840317 91840399 -92448263 + (TA)n Simple_repeat Simple_repeat 11 97 0 1138 235 133 26 chr4 91840405 91841095 -92447567 - L1MC5 LINE L1 -49 7912 7149 7821 196 35 12 chr4 91841103 91843736 -92444926 - L1PA16 LINE L1 -9 6157 3452 1828 152 3 50 chr4 91843736 91844058 -92444604 - AluSx SINE Alu -5 307 1 7821 196 35 12 chr4 91844058 91844254 -92444408 - L1PA16 LINE L1 -2714 3452 3262 8349 202 24 15 chr4 91844432 91844957 -92443705 - L1PA15-16 LINE L1 -2147 4702 4183 1958 134 3 50 chr4 91844957 91845278 -92443384 - AluSx SINE Alu -6 306 1 8349 202 24 15 chr4 91845278 91847889 -92440773 - L1PA15-16 LINE L1 -2666 4183 1532 1131 215 92 65 chr4 91847947 91848455 -92440207 - L1MC5 LINE L1 -866 7095 6559 771 269 31 0 chr4 91848934 91849127 -92439535 + MLT1F LTR MaLR 24 222 -320 578 364 45 15 chr4 91849310 91849714 -92438948 - ERVL LTR ERVL -4587 1177 762 449 288 128 8 chr4 91850299 91850556 -92438106 - LTR50 LTR ERVL -8 787 500 545 241 119 41 chr4 91850639 91850864 -92437798 - LTR50 LTR ERVL -307 216 1 1501 248 58 21 chr4 91851494 91851524 -92437138 - L1M4 LINE L1 -544 5640 5613 1605 184 0 70 chr4 91851524 91851840 -92436822 - AluJo SINE Alu -18 294 1 1501 248 58 21 chr4 91851840 91852571 -92436091 - L1M4 LINE L1 -571 5613 4846 43704 41 1 4 chr4 91852571 91858734 -92429928 + L1PA3 LINE L1 3 6150 -5 4884 225 71 20 chr4 91858740 91860392 -92428270 - L1M4 LINE L1 -1286 4860 3125 271 247 94 0 chr4 91860571 91860656 -92428006 - Tigger5 DNA MER2_type 0 2323 2231 379 336 87 0 chr4 91861075 91861224 -92427438 - MIR SINE MIR -49 213 52 212 184 0 0 chr4 91862256 91862294 -92426368 + A-rich Low_complexity Low_complexity 1 38 0 1497 185 61 12 chr4 91863814 91864254 -92424408 - MLT2B2 LTR ERVL 0 515 1 218 328 82 16 chr4 91864440 91864562 -92424100 + MIR SINE MIR 83 212 -50 562 261 105 0 chr4 91865109 91865262 -92423400 - LTR67 LTR ERVL -2 555 387 728 300 93 13 chr4 91866273 91866573 -92422089 + L2 LINE L2 2928 3251 -62 868 185 130 0 chr4 91866583 91866767 -92421895 + MER3 DNA MER1_type 2 209 0 318 50 0 0 chr4 91867592 91867632 -92421030 + (CA)n Simple_repeat Simple_repeat 1 40 0 402 57 0 0 chr4 91868557 91868610 -92420052 + (TG)n Simple_repeat Simple_repeat 2 54 0 1138 201 124 55 chr4 91868696 91869059 -92419603 - MLT1B LTR MaLR -2 388 1 22 0 0 0 chr4 91869410 91869432 -92419230 + AT_rich Low_complexity Low_complexity 1 22 0 2826 217 51 45 chr4 91869684 91870455 -92418207 - L1MA9 LINE L1 -40 6272 5498 4346 172 66 26 chr4 91870457 91871475 -92417187 - L1MA9 LINE L1 -789 5357 4300 29 47 0 0 chr4 91872499 91872542 -92416120 + AT_rich Low_complexity Low_complexity 1 43 0 899 213 79 74 chr4 91873017 91873383 -92415279 + MLT1D LTR MaLR 3 370 -135 556 309 96 21 chr4 91873358 91873660 -92415002 - MLT1E1 LTR MaLR -248 345 1 * 2449 59 0 26 chr4 91874186 91874490 -92414172 + AluY SINE Alu 2 297 -14 1741 160 110 38 chr4 91875529 91875733 -92412929 + MSTA LTR MaLR 1 189 -239 225 83 0 0 chr4 91875733 91875769 -92412893 + (TCTG)n Simple_repeat Simple_repeat 2 37 0 1741 160 110 38 chr4 91875769 91875963 -92412699 + MSTA LTR MaLR 189 428 0 1038 241 41 14 chr4 91876666 91876960 -92411702 - MER33 DNA MER1_type -22 302 1 3785 244 133 57 chr4 91876997 91878940 -92409722 - L1MDa LINE L1 -4413 2127 37 229 347 14 0 chr4 91880832 91880904 -92407758 - L2 LINE L2 0 3313 3241 218 244 0 33 chr4 91881323 91881413 -92407249 + T-rich Low_complexity Low_complexity 1 87 0 438 20 0 0 chr4 91881483 91881534 -92407128 + (TG)n Simple_repeat Simple_repeat 2 52 0 24 0 0 0 chr4 91881638 91881662 -92407000 + AT_rich Low_complexity Low_complexity 1 24 0 320 257 78 20 chr4 91881961 91882105 -92406557 + MLT1G1 LTR MaLR 214 330 -212 247 209 81 23 chr4 91882176 91882262 -92406400 + MLT1G1 LTR MaLR 465 555 0 799 338 24 12 chr4 91882542 91882691 -92405971 + LTR16B LTR ERVL 3 149 -315 1437 202 60 14 chr4 91882691 91883038 -92405624 - MLT1A1 LTR MaLR 0 365 3 799 338 24 12 chr4 91883038 91883222 -92405440 + LTR16B LTR ERVL 149 340 -124 222 297 40 14 chr4 91883568 91883642 -92405020 - L2 LINE L2 -558 2756 2681 322 335 26 39 chr4 91883830 91883985 -92404677 - MIR SINE MIR -98 164 12 260 120 200 40 chr4 91884245 91884320 -92404342 - L2 LINE L2 -5 3308 3222 1525 186 43 11 chr4 91884320 91884600 -92404062 + AluJo SINE Alu 1 289 -23 854 276 178 35 chr4 91886503 91887250 -92401412 + L1MC4 LINE L1 7189 8042 0 501 308 40 82 chr4 91888072 91888137 -92400525 + L1M4 LINE L1 3790 3856 -2290 1761 181 16 30 chr4 91888137 91888507 -92400155 + MLT1A1 LTR MaLR 1 365 0 501 308 40 82 chr4 91888507 91888943 -92399719 + L1M4 LINE L1 3856 4271 -1875 1570 200 7 0 chr4 91888943 91889223 -92399439 - AluJb SINE Alu -22 290 9 501 308 40 82 chr4 91889223 91889243 -92399419 + L1M4 LINE L1 4271 4290 -1856 263 197 99 0 chr4 91889296 91889367 -92399295 + L1ME LINE L1 5725 5802 -319 1105 236 51 51 chr4 91889554 91889944 -92398718 + MLT1B LTR MaLR 1 390 0 318 296 25 0 chr4 91890039 91890120 -92398542 + L2 LINE L2 1522 1604 -1710 1275 319 56 6 chr4 91890144 91890660 -92398002 + L2 LINE L2 2518 3055 -258 423 198 35 0 chr4 91890663 91890749 -92397913 + MLT1C LTR MaLR 1 89 -378 261 111 0 0 chr4 91890894 91890930 -92397732 + (T)n Simple_repeat Simple_repeat 1 36 0 33573 38 32 2 chr4 91891059 91895214 -92393448 - L1P LINE L1 -1866 4280 1 25 31 0 0 chr4 91895215 91895247 -92393415 + AT_rich Low_complexity Low_complexity 1 32 0 2936 9 0 0 chr4 91895568 91895886 -92392776 + AluYb8 SINE Alu 1 318 0 220 189 11 56 chr4 91898129 91898219 -92390443 + (TA)n Simple_repeat Simple_repeat 2 87 0 209 316 84 14 chr4 91898652 91898845 -92389817 - L2 LINE L2 -213 3059 2854 1661 178 58 12 chr4 91898963 91899289 -92389373 + MER61A LTR ERV1 3 343 0 180 234 109 31 chr4 91903139 91903203 -92385459 - MIR SINE MIR -113 149 81 206 341 152 15 chr4 91903539 91903671 -92384991 - L2 LINE L2 -28 3244 3095 201 336 88 9 chr4 91903833 91903946 -92384716 - MIR SINE MIR -129 133 12 1795 160 0 0 chr4 91905057 91905320 -92383342 + AluSx SINE Alu 1 263 -49 243 0 0 0 chr4 91905332 91905359 -92383303 + (CA)n Simple_repeat Simple_repeat 2 28 0 183 80 0 0 chr4 91906344 91906369 -92382293 + (TGGA)n Simple_repeat Simple_repeat 1 25 0 21 57 0 0 chr4 91906909 91906944 -92381718 + AT_rich Low_complexity Low_complexity 1 35 0 1067 220 9 7 chr4 91907023 91907335 -92381327 + MER65C LTR ERV1 1 347 -114 312 326 100 43 chr4 91907451 91907515 -92381147 - L1ME LINE L1 -382 5739 5680 2040 122 14 3 chr4 91907515 91907802 -92380860 + AluSx SINE Alu 13 302 -10 312 326 100 43 chr4 91907802 91907967 -92380695 - L1ME LINE L1 -441 5680 5497 3301 128 70 26 chr4 91908581 91909165 -92379497 + MER4B LTR ERV1 1 610 0 505 264 182 14 chr4 91909418 91909566 -92379096 - MER5A DNA MER1_type -6 183 11 227 204 0 0 chr4 91910775 91910824 -92377838 + T-rich Low_complexity Low_complexity 1 49 0 182 292 42 0 chr4 91911307 91911355 -92377307 + L2 LINE L2 3159 3208 -64 1736 171 113 99 chr4 91911656 91911703 -92376959 + LTR36 LTR ERV1 1 46 -565 1758 165 0 44 chr4 91911703 91912024 -92376638 - AluJb SINE Alu -5 307 1 1736 171 113 99 chr4 91912024 91912579 -92376083 + LTR36 LTR ERV1 46 611 0 253 324 70 76 chr4 91912602 91912787 -92375875 - MLT1K LTR MaLR -391 197 14 21 0 0 0 chr4 91913214 91913235 -92375427 + AT_rich Low_complexity Low_complexity 1 21 0 236 240 0 0 chr4 91913737 91913787 -92374875 + MER94 DNA DNA 1 50 -84 238 217 17 17 chr4 91915092 91915152 -92373510 + GA-rich Low_complexity Low_complexity 2 61 0 481 317 96 67 chr4 91915186 91915349 -92373313 + L2 LINE L2 2564 2721 -592 1832 136 98 14 chr4 91915349 91915695 -92372967 - THE1C LTR MaLR 0 375 1 481 317 96 67 chr4 91915695 91916256 -92372406 + L2 LINE L2 2721 3303 -10 266 247 13 0 chr4 91916424 91916501 -92372161 - L1MC/D LINE L1 -2024 5784 5707 464 268 62 46 chr4 91916509 91916703 -92371959 - L2 LINE L2 -14 3299 3103 238 250 130 9 chr4 91917093 91917201 -92371461 - HAL1 LINE L1 -1275 1232 1112 649 295 95 14 chr4 91917681 91918541 -92370121 + L1MEc LINE L1 990 1959 -4586 394 257 10 10 chr4 91918663 91918764 -92369898 + MIR SINE MIR 69 169 -93 529 248 122 22 chr4 91918880 91919102 -92369560 + HAL1b LINE L1 404 647 -701 1533 184 22 11 chr4 91919190 91919468 -92369194 + AluJo SINE Alu 1 281 -31 318 50 0 0 chr4 91919497 91919537 -92369125 + (TCTA)n Simple_repeat Simple_repeat 1 40 0 625 254 79 55 chr4 91919703 91920046 -92368616 - L1M4 LINE L1 -5302 1240 890 883 239 30 13 chr4 91920060 91920290 -92368372 + MER46A DNA MER2_type 2 235 -1 1113 68 0 0 chr4 91920320 91920335 -92368327 + L1PA6 LINE L1 5681 5695 -459 303 85 0 0 chr4 91920335 91920382 -92368280 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 1113 68 0 0 chr4 91920382 91920518 -92368144 + L1PA6 LINE L1 5694 5832 -322 831 55 9 0 chr4 91920518 91920627 -92368035 + L1PA6 LINE L1 6039 6148 -6 21 0 0 0 chr4 91920627 91920648 -92368014 + AT_rich Low_complexity Low_complexity 1 21 0 371 91 55 9 chr4 91920648 91920758 -92367904 + (TTAAA)n Simple_repeat Simple_repeat 5 119 0 720 264 99 71 chr4 91920820 91921316 -92367346 + L1M4 LINE L1 371 880 -5662 222 233 0 0 chr4 91921374 91921507 -92367155 + (TA)n Simple_repeat Simple_repeat 1 133 0 2059 175 6 3 chr4 91922661 91923026 -92365636 - MER47A DNA MER2_type 0 366 1 329 232 14 0 chr4 91923088 91923157 -92365505 + L2 LINE L2 3242 3311 -2 21 36 0 0 chr4 91923719 91923747 -92364915 + AT_rich Low_complexity Low_complexity 1 28 0 312 297 72 57 chr4 91923936 91924145 -92364517 + MIR SINE MIR 14 225 -37 222 267 137 20 chr4 91925456 91925602 -92363060 + MIR SINE MIR 100 262 0 24 67 0 0 chr4 91925644 91925689 -92362973 + AT_rich Low_complexity Low_complexity 1 45 0 410 379 59 50 chr4 91925814 91926609 -92362053 - L2 LINE L2 0 3272 2464 * 906 291 11 11 chr4 91926594 91926855 -92361807 - MIR SINE MIR 0 262 2 1004 343 64 21 chr4 91926989 91927151 -92361511 - L2 LINE L2 -904 2410 2256 1150 55 0 0 chr4 91927151 91927296 -92361366 + L1PA5 LINE L1 6004 6148 -6 1004 343 64 21 chr4 91927296 91927807 -92360855 - L2 LINE L2 -1058 2256 1708 2655 235 102 28 chr4 91927807 91929080 -92359582 + L1ME2 LINE L1 4794 6164 0 2136 268 33 50 chr4 91929090 91929876 -92358786 + L1MC4 LINE L1 6373 7145 -897 7788 221 53 77 chr4 91930450 91931172 -92357490 - L1MD2 LINE L1 -1 6618 5880 1576 206 71 3 chr4 91931172 91931536 -92357126 - MLT1B LTR MaLR 0 390 2 7788 221 53 77 chr4 91931536 91935332 -92353330 - L1MD2 LINE L1 -739 5880 2210 2769 216 112 41 chr4 91935354 91936469 -92352193 - L1MD2 LINE L1 -4738 1668 515 2064 264 36 42 chr4 91936542 91937159 -92351503 - L1MD2 LINE L1 -5789 620 8 362 296 53 30 chr4 91938809 91938941 -92349721 + MIR3 SINE MIR 26 160 -48 705 244 23 0 chr4 91938966 91939138 -92349524 + MER58A DNA MER1_type 46 221 -3 829 276 22 4 chr4 91940100 91940325 -92348337 + MLT1H LTR MaLR 1 229 -320 1078 285 74 11 chr4 91940367 91940746 -92347916 + MLT1F LTR MaLR 58 460 -82 325 232 14 0 chr4 91941339 91941408 -92347254 - L2 LINE L2 -2 3311 3242 1961 183 8 8 chr4 91941470 91941836 -92346826 + MER47A DNA MER2_type 1 366 0 302 255 49 39 chr4 91942977 91943079 -92345583 - L1MC4 LINE L1 -1321 6721 6619 725 264 99 71 chr4 91943181 91943677 -92344985 - L1M4 LINE L1 -5662 880 371 615 98 51 0 chr4 91943739 91943953 -92344709 + (TTTAA)n Simple_repeat Simple_repeat 1 225 0 47 19 0 0 chr4 91943953 91944007 -92344655 + AT_rich Low_complexity Low_complexity 1 54 0 831 55 9 0 chr4 91944007 91944116 -92344546 - L1PA6 LINE L1 -6 6148 6039 499 287 0 0 chr4 91944120 91944252 -92344410 - L1MC2 LINE L1 -516 5828 5694 303 85 0 0 chr4 91944252 91944299 -92344363 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 499 287 0 0 chr4 91944299 91944323 -92344339 - L1MC2 LINE L1 -649 5695 5672 886 239 30 13 chr4 91944344 91944574 -92344088 - MER46A DNA MER2_type -1 235 2 706 250 78 57 chr4 91944588 91944972 -92343690 + L1MB8 LINE L1 890 1281 -5261 553 154 0 0 chr4 91944975 91945066 -92343596 + U6 snRNA snRNA 17 107 0 6589 244 93 32 chr4 91945075 91945950 -92342712 + L1MB8 LINE L1 1195 2016 -4660 2249 114 114 5 chr4 91945950 91946335 -92342327 - MSTA LTR MaLR -1 427 1 6589 244 93 32 chr4 91946335 91950476 -92338186 + L1MB8 LINE L1 2016 6661 -15 265 333 77 8 chr4 91951818 91951935 -92336727 - MIR SINE MIR -126 136 12 386 157 19 57 chr4 91952090 91952249 -92336413 + (TA)n Simple_repeat Simple_repeat 1 153 0 2410 69 0 3 chr4 91952257 91952562 -92336100 + AluY SINE Alu 1 304 -7 246 200 33 33 chr4 91952768 91952828 -92335834 + MIR3 SINE MIR 109 168 -40 25 0 0 0 chr4 91953135 91953160 -92335502 + AT_rich Low_complexity Low_complexity 1 25 0 247 289 94 16 chr4 91953163 91953291 -92335371 - L1P LINE L1 -1101 5045 4908 336 256 83 2 chr4 91953441 91953568 -92335094 + L1MC/D LINE L1 5373 5508 -613 4440 210 81 25 chr4 91953663 91954947 -92333715 + Charlie1a DNA MER1_type 17 1407 -48 272 301 34 96 chr4 91955302 91955448 -92333214 + MLT1J LTR MaLR 5 141 -370 578 254 164 0 chr4 91955487 91955652 -92333010 + MLT1J LTR MaLR 257 448 -63 1102 215 177 46 chr4 91955879 91956500 -92332162 + LTR48 LTR ERV1 1 595 0 396 0 0 0 chr4 91956623 91956667 -92331995 + (CA)n Simple_repeat Simple_repeat 2 45 0 4638 98 8 16 chr4 91956792 91957462 -92331200 + MER4A LTR ERV1 1 664 0 2228 113 0 3 chr4 91957496 91957798 -92330864 + AluSq SINE Alu 1 301 -12 376 136 0 25 chr4 91957976 91958057 -92330605 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 24 0 0 0 chr4 91959168 91959192 -92329470 + AT_rich Low_complexity Low_complexity 1 24 0 2648 186 58 6 chr4 91959926 91960200 -92328462 - L1MC3 LINE L1 -8 7777 7519 3675 120 39 20 chr4 91960200 91960841 -92327821 + MER39B LTR ERV1 1 653 0 2648 186 58 6 chr4 91960841 91961116 -92327546 - L1MC3 LINE L1 -266 7519 7199 243 286 44 11 chr4 91961117 91961208 -92327454 - MLT1F1 LTR MaLR -438 129 36 407 172 46 0 chr4 91961209 91961296 -92327366 - L1MC3 LINE L1 -688 7097 7007 208 333 87 27 chr4 91964427 91964577 -92324085 - MIR SINE MIR 0 262 104 371 340 103 6 chr4 91966427 91966583 -92322079 - MIR SINE MIR -71 191 21 1364 298 47 11 chr4 91967431 91967964 -92320698 - MLT1H1 LTR MaLR 0 555 4 589 317 84 36 chr4 91968150 91968399 -92320263 + MIR SINE MIR 2 262 0 2507 102 16 11 chr4 91968405 91968776 -92319886 + THE1C LTR MaLR 1 373 -2 209 281 0 35 chr4 91968783 91968840 -92319822 + MIR SINE MIR 68 122 -86 616 216 0 0 chr4 91968896 91969012 -92319650 - MER77 LTR ERV1 -86 519 404 759 214 32 7 chr4 91969059 91969213 -92319449 - MER77 LTR ERV1 -442 163 6 408 200 29 29 chr4 91969218 91969323 -92319339 + L1MC3 LINE L1 7659 7763 -22 1483 170 165 17 chr4 91969491 91969897 -92318765 + L1MB7 LINE L1 5698 6164 -16 24 67 0 0 chr4 91969904 91969949 -92318713 + AT_rich Low_complexity Low_complexity 1 45 0 225 0 0 0 chr4 91974581 91974606 -92314056 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 26 30 0 0 chr4 91980497 91980530 -92308132 + AT_rich Low_complexity Low_complexity 1 33 0 359 328 27 27 chr4 91980663 91980849 -92307813 - L1ME4a LINE L1 -217 5904 5719 419 339 33 29 chr4 91981582 91981824 -92306838 - MIR SINE MIR -2 260 18 300 293 205 10 chr4 91982967 91983172 -92305490 - MIR SINE MIR 0 262 18 8033 51 16 2 chr4 91984353 91986160 -92302502 - L1PA6 LINE L1 0 6154 4330 27 0 0 0 chr4 91986489 91986516 -92302146 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr4 91986808 91986829 -92301833 + AT_rich Low_complexity Low_complexity 1 21 0 210 287 26 52 chr4 91986893 91987008 -92301654 + L2 LINE L2 3127 3238 -75 217 171 24 0 chr4 91988234 91988275 -92300387 + A-rich Low_complexity Low_complexity 5 46 0 995 204 23 36 chr4 91988455 91988675 -92299987 + MER20 DNA MER1_type 1 217 -2 432 270 97 26 chr4 91988928 91989266 -92299396 + LTR33 LTR ERVL 17 400 -121 557 317 40 62 chr4 91990242 91990595 -92298067 - MLT1J LTR MaLR -141 370 26 1688 185 0 20 chr4 91991079 91991382 -92297280 + AluJo SINE Alu 1 297 -15 22 88 0 0 chr4 91992693 91992750 -92295912 + AT_rich Low_complexity Low_complexity 1 57 0 1888 107 0 80 chr4 91993275 91993311 -92295351 - AluSg SINE Alu -1 309 272 261 0 0 0 chr4 91993311 91993340 -92295322 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1888 107 0 80 chr4 91993340 91993639 -92295023 - AluSg SINE Alu -38 272 1 240 35 0 0 chr4 91993784 91993813 -92294849 + (TG)n Simple_repeat Simple_repeat 2 30 0 256 231 204 46 chr4 91994983 91995091 -92293571 - L2 LINE L2 -462 2852 2728 28 29 0 0 chr4 91995131 91995166 -92293496 + AT_rich Low_complexity Low_complexity 1 35 0 1965 101 11 21 chr4 91995199 91995486 -92293176 + AluSc SINE Alu 26 309 0 412 353 133 54 chr4 91996038 91996924 -92291738 - L2 LINE L2 -404 2910 1955 24 0 0 0 chr4 91997548 91997572 -92291090 + AT_rich Low_complexity Low_complexity 1 24 0 240 228 25 13 chr4 92000892 92000971 -92287691 + CT-rich Low_complexity Low_complexity 2 81 0 524 287 7 22 chr4 92001244 92001380 -92287282 - MER91A DNA MER1_type 0 196 63 1845 103 28 44 chr4 92001910 92002203 -92286459 - MER4E LTR ERV1 0 766 477 2209 113 6 0 chr4 92002203 92002514 -92286148 - AluSp SINE Alu 0 313 1 1845 103 28 44 chr4 92002514 92002541 -92286121 - MER4E LTR ERV1 -289 477 451 1078 126 162 10 chr4 92002532 92002730 -92285932 - MER4B LTR ERV1 -382 228 1 * 599 186 0 0 chr4 92003152 92003249 -92285413 + FLAM_A SINE Alu 18 114 -28 328 272 85 77 chr4 92004049 92004295 -92284367 - MIR SINE MIR -3 259 12 1927 237 52 19 chr4 92004790 92005313 -92283349 + MLT1F LTR MaLR 1 540 -2 2042 325 118 25 chr4 92005443 92007003 -92281659 + L2 LINE L2 1617 3312 -1 270 307 88 26 chr4 92007011 92007125 -92281537 + L2 LINE L2 3152 3272 0 2330 68 3 0 chr4 92008736 92009030 -92279632 - AluY SINE Alu -16 295 1 192 336 164 39 chr4 92009261 92009389 -92279273 - MIR3 SINE MIR -58 150 7 856 78 0 0 chr4 92010863 92010979 -92277683 + L1PA10 LINE L1 6048 6163 -5 1668 127 35 13 chr4 92011135 92011451 -92277211 + L1MA5 LINE L1 5978 6300 0 2358 93 0 0 chr4 92013017 92013319 -92275343 + AluY SINE Alu 1 302 -9 244 204 395 33 chr4 92013838 92013990 -92274672 + MER39 LTR ERV1 4 210 -497 1525 199 35 32 chr4 92014034 92014411 -92274251 + MER39 LTR ERV1 330 707 0 1123 296 22 27 chr4 92014541 92014943 -92273719 - LTR16C LTR ERVL 0 491 92 284 233 0 47 chr4 92016133 92016219 -92272443 - MLT1G1 LTR MaLR -2 547 466 41322 63 8 1 chr4 92016228 92022333 -92266329 - L1PA5 LINE L1 0 6154 11 927 309 73 29 chr4 92022412 92022820 -92265842 - MLT1G1 LTR MaLR -168 427 2 4536 120 26 46 chr4 92023034 92023800 -92264862 + MER4E LTR ERV1 18 768 -11 510 322 78 25 chr4 92025079 92025362 -92263300 - MLT1J LTR MaLR -97 414 117 2338 88 3 10 chr4 92025823 92026130 -92262532 + AluY SINE Alu 1 305 -6 21 0 0 0 chr4 92026771 92026792 -92261870 + AT_rich Low_complexity Low_complexity 1 21 0 194 325 38 12 chr4 92026892 92026972 -92261690 + L2 LINE L2 3232 3313 0 3183 164 26 33 chr4 92027068 92027677 -92260985 + MER6A DNA MER2_type 1 605 0 21 0 0 0 chr4 92027810 92027831 -92260831 + AT_rich Low_complexity Low_complexity 1 21 0 2325 86 0 3 chr4 92028497 92028799 -92259863 + AluY SINE Alu 1 301 -10 415 282 73 0 chr4 92028864 92028988 -92259674 + MIR SINE MIR 29 161 -101 21 57 0 0 chr4 92032009 92032044 -92256618 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr4 92032694 92032714 -92255948 + (T)n Simple_repeat Simple_repeat 1 20 0 297 344 0 0 chr4 92033410 92033506 -92255156 - MIR SINE MIR -119 143 48 765 244 122 4 chr4 92033527 92033789 -92254873 - L1ME3A LINE L1 -9 6161 5869 253 370 172 16 chr4 92033853 92034226 -92254436 - L2 LINE L2 -2560 754 324 22 0 0 0 chr4 92034670 92034692 -92253970 + AT_rich Low_complexity Low_complexity 1 22 0 250 301 53 18 chr4 92034999 92035112 -92253550 - MLT1I LTR MaLR 0 409 293 254 316 123 9 chr4 92035209 92035323 -92253339 - MLT1J2 LTR MaLR -282 168 42 344 208 0 0 chr4 92035433 92035510 -92253152 - L1MB8 LINE L1 -1 6177 6101 6118 175 17 23 chr4 92035701 92037510 -92251152 - L1PB4 LINE L1 0 6156 4338 3440 70 2 4 chr4 92037510 92037968 -92250694 - L1PA10 LINE L1 -3 6165 5709 6118 175 17 23 chr4 92037968 92038233 -92250429 - L1PB4 LINE L1 -1818 4338 4092 2340 95 0 3 chr4 92038233 92038538 -92250124 + AluY SINE Alu 1 304 -7 6118 175 17 23 chr4 92038538 92038611 -92250051 - L1PB4 LINE L1 -2064 4092 4020 1222 191 27 57 chr4 92038603 92038974 -92249688 - L1MB8 LINE L1 -233 5951 5592 * 756 273 86 14 chr4 92038970 92039369 -92249293 - L1M4 LINE L1 -3655 2989 2607 * 22 70 0 0 chr4 92039382 92039425 -92249237 + AT_rich Low_complexity Low_complexity 1 43 0 541 179 93 113 chr4 92039480 92039538 -92249124 + L1M4 LINE L1 2137 2195 -3951 2387 84 3 0 chr4 92039538 92039836 -92248826 - AluY SINE Alu -12 299 1 541 179 93 113 chr4 92039836 92040141 -92248521 + L1M4 LINE L1 2195 2493 -3653 328 245 29 10 chr4 92040137 92040239 -92248423 + L1ME LINE L1 5590 5693 -473 * 5987 80 19 8 chr4 92040236 92041070 -92247592 + L1PA8A LINE L1 5286 6128 -3 822 273 39 36 chr4 92041085 92041470 -92247192 - L1M4 LINE L1 -4480 2345 1960 21 0 0 0 chr4 92041474 92041495 -92247167 + AT_rich Low_complexity Low_complexity 1 21 0 8857 158 27 24 chr4 92041512 92041621 -92247041 - L1MA3 LINE L1 -67 7657 7550 4881 128 35 9 chr4 92041621 92042381 -92246281 - LTR17 LTR ERV1 0 780 1 8857 158 27 24 chr4 92042381 92043672 -92244990 - L1MA3 LINE L1 -174 7550 6265 1167 168 157 27 chr4 92043672 92043934 -92244728 + AluSg SINE Alu 1 296 -4 8857 158 27 24 chr4 92043934 92045098 -92243564 - L1MA3 LINE L1 -1459 6265 5086 189 0 0 0 chr4 92045098 92045119 -92243543 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 8857 158 27 24 chr4 92045119 92045357 -92243305 - L1MA3 LINE L1 -2638 5086 4850 13356 186 39 14 chr4 92045871 92050262 -92238400 - L1MA3 LINE L1 -2705 4860 5 1737 231 93 53 chr4 92050265 92050975 -92237687 - L1M4 LINE L1 -4836 1810 1065 1956 137 3 3 chr4 92050975 92051260 -92237402 + AluSx SINE Alu 1 285 -27 1737 231 93 53 chr4 92051260 92051423 -92237239 - L1M4 LINE L1 -5581 1065 910 235 275 50 90 chr4 92051873 92052073 -92236589 - L1M4 LINE L1 -6335 207 16 449 238 25 138 chr4 92052320 92052527 -92236135 + MLT1K LTR MaLR 331 499 -89 2130 134 73 14 chr4 92052527 92052871 -92235791 - THE1B LTR MaLR 0 364 1 449 238 25 138 chr4 92052871 92052945 -92235717 + MLT1K LTR MaLR 499 580 -8 306 296 52 17 chr4 92053956 92054071 -92234591 - L2 LINE L2 -6 3307 3189 310 240 35 41 chr4 92055739 92055844 -92232818 - MIR SINE MIR -32 176 68 21 0 0 0 chr4 92056405 92056426 -92232236 + AT_rich Low_complexity Low_complexity 1 21 0 419 264 51 39 chr4 92056579 92056757 -92231905 - MER5A DNA MER1_type -4 185 6 21 0 0 0 chr4 92057442 92057463 -92231199 + AT_rich Low_complexity Low_complexity 1 21 0 293 254 0 0 chr4 92058108 92058171 -92230491 - L2 LINE L2 0 3313 3251 3176 220 50 40 chr4 92058360 92059302 -92229360 - L1MC3 LINE L1 0 7785 6835 9373 36 0 0 chr4 92059471 92060625 -92228037 - L1P LINE L1 -2287 3859 2706 7204 33 18 3 chr4 92060625 92062019 -92226643 + L1PA5 LINE L1 4743 6149 -5 2179 118 10 0 chr4 92062827 92063132 -92225530 + AluSg1 SINE Alu 1 308 -1 272 287 220 20 chr4 92063437 92063587 -92225075 + MIR SINE MIR 24 203 -59 2793 235 69 33 chr4 92063666 92064424 -92224238 - MER21B LTR ERV1 -60 803 19 32 26 0 0 chr4 92064510 92064549 -92224113 + AT_rich Low_complexity Low_complexity 1 39 0 342 277 30 20 chr4 92064921 92065022 -92223640 - HERV16 LTR ERVL -2157 2839 2738 30 27 0 0 chr4 92065119 92065156 -92223506 + AT_rich Low_complexity Low_complexity 1 37 0 383 95 16 0 chr4 92067147 92067210 -92221452 + L1PA3 LINE L1 6092 6155 0 2121 133 51 20 chr4 92068137 92068490 -92220172 - THE1B LTR MaLR 0 364 1 11437 92 13 6 chr4 92068490 92070058 -92218604 - THE1B-int LTR MaLR 0 1580 1 1815 143 12 100 chr4 92070058 92070457 -92218205 - THE1B LTR MaLR 0 364 1 1471 291 135 49 chr4 92071246 92072229 -92216433 - L2 LINE L2 0 3313 2181 1626 171 24 24 chr4 92072229 92072521 -92216141 - AluSx SINE Alu -20 292 1 1471 291 135 49 chr4 92072521 92072925 -92215737 - L2 LINE L2 -1132 2181 1813 245 361 78 30 chr4 92073068 92073234 -92215428 - MER5A DNA MER1_type 0 189 16 26 0 0 0 chr4 92074377 92074403 -92214259 + AT_rich Low_complexity Low_complexity 1 26 0 309 335 138 5 chr4 92074425 92074643 -92214019 + MIR SINE MIR 2 248 -14 21 57 0 0 chr4 92075169 92075204 -92213458 + AT_rich Low_complexity Low_complexity 1 35 0 219 337 122 6 chr4 92075593 92075774 -92212888 - MIR SINE MIR -12 250 49 217 395 0 0 chr4 92075917 92075993 -92212669 + MIR3 SINE MIR 85 160 -48 15100 149 20 36 chr4 92076662 92078611 -92210051 + Tigger2 DNA MER2_type 4 1898 -820 7155 48 9 3 chr4 92078611 92079634 -92209028 + L1PA7 LINE L1 5127 6154 0 15100 149 20 36 chr4 92079634 92080399 -92208263 + Tigger2 DNA MER2_type 1898 2674 -44 750 272 88 4 chr4 92081656 92081895 -92206767 - MIR SINE MIR 0 262 4 226 324 29 81 chr4 92081895 92081969 -92206693 + MIR SINE MIR 84 150 -112 525 219 67 18 chr4 92082085 92082249 -92206413 - LTR33A LTR ERVL -25 498 327 375 215 118 0 chr4 92082287 92082380 -92206282 - LTR33A LTR ERVL -283 240 137 1098 237 157 94 chr4 92083170 92083947 -92204715 + LTR1B LTR ERV1 1 826 0 1078 281 60 26 chr4 92084047 92084431 -92204231 - LTR16A LTR ERVL -2 448 52 1152 290 47 62 chr4 92084623 92084796 -92203866 + MLT1E LTR MaLR 3 177 -416 2223 104 0 3 chr4 92084796 92085095 -92203567 + AluSc SINE Alu 1 298 -11 1152 290 47 62 chr4 92085095 92085517 -92203145 + MLT1E LTR MaLR 177 589 -4 224 300 25 0 chr4 92086868 92086948 -92201714 + (TATATG)n Simple_repeat Simple_repeat 4 85 0 1911 134 3 7 chr4 92088613 92088896 -92199766 - AluSx SINE Alu -30 282 1 291 326 33 11 chr4 92089426 92089518 -92199144 + L2 LINE L2 3188 3281 -32 632 286 28 42 chr4 92090518 92090735 -92197927 - MIR SINE MIR -2 260 47 909 272 34 73 chr4 92091538 92091976 -92196686 + MLT1J1 LTR MaLR 1 421 -25 715 332 25 27 chr4 92092099 92092466 -92196196 + LTR16B LTR ERVL 3 368 -96 2662 158 27 2 chr4 92092656 92093106 -92195556 - MLT1C LTR MaLR -5 462 2 1720 200 126 19 chr4 92093419 92093848 -92194814 + MLT2B1 LTR ERVL 1 486 -34 192 77 0 0 chr4 92093848 92093874 -92194788 + (TCTA)n Simple_repeat Simple_repeat 4 29 0 1720 200 126 19 chr4 92093874 92093914 -92194748 + MLT2B1 LTR ERVL 486 520 0 1321 219 86 20 chr4 92093937 92094288 -92194374 + ERVL-B1 LTR ERVL 22 395 -5369 282 350 49 0 chr4 92094340 92094463 -92194199 - MIR SINE MIR -10 252 124 5369 199 53 0 chr4 92094470 92095456 -92193206 + ERVL-B1 LTR ERVL 417 1454 -4310 887 240 10 29 chr4 92095456 92095660 -92193002 + MER8 DNA MER2_type 1 200 -39 475 125 28 0 chr4 92095669 92095741 -92192921 - Tigger2 DNA MER2_type -2644 74 1 15984 181 30 28 chr4 92095742 92097866 -92190796 + ERVL-B1 LTR ERVL 1454 3590 -2174 2342 163 26 9 chr4 92097866 92098289 -92190373 - MSTB1 LTR MaLR -2 430 1 15984 181 30 28 chr4 92098289 92099164 -92189498 + ERVL-B1 LTR ERVL 3590 4461 -1303 368 230 0 0 chr4 92099167 92099241 -92189421 + AluJ/FRAM SINE Alu 225 298 -4 18115 99 7 2 chr4 92099280 92102731 -92185931 + L1PA7 LINE L1 2676 6152 -2 24 67 0 0 chr4 92102840 92102885 -92185777 + AT_rich Low_complexity Low_complexity 1 45 0 258 231 0 0 chr4 92103358 92103423 -92185239 + GA-rich Low_complexity Low_complexity 4 68 0 205 303 53 13 chr4 92104281 92104357 -92184305 + MIR SINE MIR 1 79 -183 25 0 0 0 chr4 92104367 92104392 -92184270 + AT_rich Low_complexity Low_complexity 1 25 0 2106 36 4 0 chr4 92104404 92104656 -92184006 - L1PA3 LINE L1 -5 6150 5898 379 293 24 37 chr4 92104671 92104777 -92183885 + MIR SINE MIR 99 204 -58 961 196 53 19 chr4 92104777 92104986 -92183676 - MER20 DNA MER1_type 0 219 4 379 293 24 37 chr4 92104986 92105043 -92183619 + MIR SINE MIR 204 260 -2 282 29 0 0 chr4 92105236 92105271 -92183391 + (CA)n Simple_repeat Simple_repeat 2 36 0 851 159 146 30 chr4 92106239 92106472 -92182190 + L1MB8 LINE L1 5916 6175 -3 2299 208 24 28 chr4 92106492 92106997 -92181665 - LTR40a LTR ERVL -14 505 3 270 0 0 0 chr4 92107451 92107481 -92181181 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 1477 192 8 0 chr4 92107482 92107737 -92180925 - AluJo SINE Alu -55 257 1 2175 110 3 7 chr4 92108671 92108979 -92179683 - AluSq SINE Alu 0 313 7 3994 176 19 3 chr4 92109745 92110563 -92178099 + L1MA9 LINE L1 5197 6027 -285 332 287 73 53 chr4 92110724 92110816 -92177846 + L2 LINE L2 3161 3259 -54 2209 127 6 12 chr4 92110816 92111155 -92177507 - MER1B DNA MER1_type 0 337 1 332 287 73 53 chr4 92111155 92111212 -92177450 + L2 LINE L2 3259 3313 0 329 266 32 76 chr4 92111967 92112125 -92176537 + L1MC3 LINE L1 4292 4442 -1704 3519 222 66 27 chr4 92112142 92113742 -92174920 + L1MC3 LINE L1 4581 5371 -775 15580 30 1 0 chr4 92113845 92115714 -92172948 + L1P LINE L1 3432 5302 -844 2500 208 37 46 chr4 92115905 92116579 -92172083 - L1MA9 LINE L1 -39 6273 5606 2430 174 77 14 chr4 92116848 92117331 -92171331 + LTR64 LTR ERVK 1 513 0 14174 135 11 27 chr4 92117934 92120281 -92168381 + Tigger1 DNA MER2_type 1 2310 -108 287 288 83 22 chr4 92120384 92120613 -92168049 - L1M4 LINE L1 -2196 3950 3708 342 313 23 9 chr4 92121148 92121362 -92167300 - L1M4 LINE L1 -3660 2486 2270 2162 116 3 13 chr4 92122283 92122594 -92166068 + AluSc SINE Alu 1 308 -1 2392 70 0 10 chr4 92123347 92123661 -92165001 + AluY SINE Alu 1 311 0 788 201 0 52 chr4 92125074 92125248 -92163414 + FAM SINE Alu 1 165 -10 751 198 115 5 chr4 92125452 92125743 -92162919 + MSTD LTR MaLR 1 391 -5 908 136 7 0 chr4 92125865 92126005 -92162657 + L1PB4 LINE L1 6011 6151 -5 818 215 17 17 chr4 92126267 92126444 -92162218 - MER5B DNA MER1_type -1 177 1 329 322 148 20 chr4 92126461 92126610 -92162052 + MER5B DNA MER1_type 2 169 -9 319 167 0 83 chr4 92126921 92127029 -92161633 - L1MCa LINE L1 -1749 4677 4579 554 229 25 0 chr4 92127149 92127271 -92161391 - L1MCa LINE L1 -2299 4127 4003 1077 212 22 9 chr4 92127272 92127494 -92161168 - THE1C LTR MaLR -150 225 1 1763 236 81 6 chr4 92127495 92128200 -92160462 - L1MCa LINE L1 -2521 3905 3148 255 260 26 0 chr4 92128211 92128288 -92160374 - L1MCa LINE L1 -3549 2877 2799 825 241 100 35 chr4 92128334 92128607 -92160055 - L1MCa LINE L1 -3876 2731 2477 1541 193 67 52 chr4 92128607 92128995 -92159667 + MSTD LTR MaLR 3 396 0 825 241 100 35 chr4 92128995 92129251 -92159411 - L1MCa LINE L1 -4130 2477 2128 1657 154 6 19 chr4 92129471 92129821 -92158841 - MER4A LTR ERV1 0 664 261 559 124 21 10 chr4 92129821 92129918 -92158744 - MER4A LTR ERV1 -566 98 1 14092 118 62 21 chr4 92129940 92131911 -92156751 - MER4A-int LTR ERV1 -7 6591 4483 2378 44 41 0 chr4 92131911 92132206 -92156456 - AluY SINE Alu -4 307 1 14092 118 62 21 chr4 92132206 92132881 -92155781 - MER4A-int LTR ERV1 -2115 4483 3837 3472 158 62 46 chr4 92132880 92133808 -92154854 - MER4A-int LTR ERV1 -2917 3681 2739 * 973 195 113 0 chr4 92133809 92134040 -92154622 + LTR8 LTR ERV1 1 257 -434 7425 111 75 11 chr4 92134040 92135452 -92153210 - MER4A-int LTR ERV1 -4103 2495 994 351 98 0 0 chr4 92135451 92135502 -92153160 - MER4A-int LTR ERV1 -5712 886 836 * 401 124 93 17 chr4 92135621 92135769 -92152893 - MER4A-int LTR ERV1 -5785 813 586 1453 97 14 0 chr4 92135769 92135976 -92152686 + L1PA8 LINE L1 5939 6148 -24 4238 57 35 20 chr4 92135976 92136997 -92151665 - MER11A LTR ERVK 0 1266 1 2659 103 181 30 chr4 92137018 92137544 -92151118 - MER4A-int LTR ERV1 -5993 605 1 1917 131 3 19 chr4 92137547 92137898 -92150764 - MER4A LTR ERV1 0 664 261 537 134 21 10 chr4 92137898 92137995 -92150667 - MER4A LTR ERV1 -566 98 1 2372 245 42 80 chr4 92138027 92139268 -92149394 - L1MCb LINE L1 -4851 1194 1 1664 204 39 30 chr4 92139696 92140127 -92148535 + MER31B LTR ERV1 1 435 -31 403 138 0 0 chr4 92140252 92140310 -92148352 - FRAM SINE Alu -50 126 69 282 333 106 24 chr4 92140725 92140932 -92147730 - MIR SINE MIR -33 229 6 28 0 0 0 chr4 92141095 92141123 -92147539 + AT_rich Low_complexity Low_complexity 1 28 0 24 103 0 0 chr4 92141545 92141632 -92147030 + AT_rich Low_complexity Low_complexity 1 87 0 35 0 0 0 chr4 92142100 92142135 -92146527 + AT_rich Low_complexity Low_complexity 1 35 0 8047 35 1 0 chr4 92142139 92143884 -92144778 - L1PA2 LINE L1 0 6155 4410 7587 108 46 86 chr4 92143986 92145421 -92143241 - THE1C-int LTR MaLR -202 1378 1 2380 133 19 3 chr4 92145421 92145790 -92142872 - THE1C LTR MaLR 0 375 1 2178 320 45 32 chr4 92145800 92147098 -92141564 + HERV16 LTR ERVL 261 1574 -3422 809 347 94 18 chr4 92147119 92147932 -92140730 + HERV16 LTR ERVL 1927 2801 -2195 305 344 42 16 chr4 92147930 92148122 -92140540 + HERV16 LTR ERVL 3272 3468 -2296 * 340 266 53 0 chr4 92148124 92148218 -92140444 + LTR16B LTR ERVL 364 462 -2 298 270 117 18 chr4 92148290 92148401 -92140261 + L2 LINE L2 3191 3312 -1 21 0 0 0 chr4 92149300 92149321 -92139341 + AT_rich Low_complexity Low_complexity 1 21 0 207 69 0 0 chr4 92150691 92150720 -92137942 + (TG)n Simple_repeat Simple_repeat 1 29 0 687 237 56 5 chr4 92150854 92151052 -92137610 - MER3 DNA MER1_type -1 208 1 396 293 102 22 chr4 92152514 92152739 -92135923 + MIR SINE MIR 4 246 -16 320 320 82 21 chr4 92153232 92153426 -92135236 + L1M4 LINE L1 4201 4406 -1740 205 169 34 56 chr4 92153457 92153546 -92135116 + (TTATA)n Simple_repeat Simple_repeat 3 89 0 333 203 0 13 chr4 92156167 92156246 -92132416 + MLT1I LTR MaLR 65 142 -267 288 162 54 162 chr4 92156403 92156551 -92132111 + MLT1H LTR MaLR 408 526 -23 378 75 0 0 chr4 92157336 92157389 -92131273 - MADE1 DNA Mariner 0 80 28 220 352 46 46 chr4 92157627 92157846 -92130816 + L2 LINE L2 2393 2611 -703 1032 158 43 34 chr4 92158074 92158301 -92130361 - MER21B LTR ERV1 -26 837 609 606 231 31 0 chr4 92158301 92158431 -92130231 - Tigger3(Golem) DNA MER2_type 0 3029 2896 2442 150 133 0 chr4 92158514 92158966 -92129696 + MER41E LTR ERV1 1 512 0 758 94 31 24 chr4 92158966 92159093 -92129569 - Tigger3(Golem) DNA MER2_type -131 2898 2771 410 212 106 38 chr4 92159091 92159223 -92129439 - Tigger3(Golem) DNA MER2_type -2888 141 1 * 2231 190 61 7 chr4 92159227 92159748 -92128914 - MER21B LTR ERV1 -255 608 1 206 323 0 0 chr4 92159836 92159932 -92128730 + A-rich Low_complexity Low_complexity 1 96 0 309 256 0 0 chr4 92160180 92160271 -92128391 + MER34 LTR ERV1 6 96 -446 619 185 48 16 chr4 92160348 92160802 -92127860 + LTR49 LTR ERV1 115 595 0 21 36 0 0 chr4 92160884 92160912 -92127750 + AT_rich Low_complexity Low_complexity 1 28 0 2203 206 98 90 chr4 92160926 92161746 -92126916 + LTR1B LTR ERV1 1 826 0 3665 180 55 24 chr4 92162657 92163522 -92125140 - L1MB3 LINE L1 -3 6180 5289 2436 64 0 3 chr4 92163538 92163835 -92124827 - AluY SINE Alu -15 296 1 211 269 171 56 chr4 92163841 92163893 -92124769 + L2 LINE L2 2698 2743 -571 1952 153 33 17 chr4 92163893 92164252 -92124410 - MLT1A1 LTR MaLR 0 365 1 211 269 171 56 chr4 92164252 92164433 -92124229 + L2 LINE L2 2743 2958 -356 216 296 85 74 chr4 92164506 92164695 -92123967 + L2 LINE L2 3109 3299 -14 212 283 0 0 chr4 92166183 92166229 -92122433 + MIR SINE MIR 208 253 -9 1040 298 31 26 chr4 92166916 92167332 -92121330 - LTR16A LTR ERVL -17 433 16 45 19 0 0 chr4 92167362 92167414 -92121248 + AT_rich Low_complexity Low_complexity 1 52 0 2068 38 0 0 chr4 92167584 92167824 -92120838 + AluY SINE Alu 1 240 -71 1781 139 37 17 chr4 92169143 92169438 -92119224 + AluSx SINE Alu 1 301 -11 319 327 55 30 chr4 92169662 92169827 -92118835 + MER5B DNA MER1_type 9 177 -1 3799 90 2 6 chr4 92170078 92170591 -92118071 + MER9 LTR ERVK 1 511 0 553 299 34 29 chr4 92170613 92170817 -92117845 - MIR SINE MIR -26 236 32 188 98 0 49 chr4 92171310 92171351 -92117311 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 433 206 21 0 chr4 92171694 92171785 -92116877 - LTR16A LTR ERVL -5 445 353 251 193 18 0 chr4 92171785 92171842 -92116820 + MER52A LTR ERV1 1 58 -1697 6468 192 59 49 chr4 92172372 92173954 -92114708 + MER52A LTR ERV1 56 1755 0 347 225 45 11 chr4 92173973 92174062 -92114600 - LTR16A LTR ERVL -159 291 200 286 306 37 56 chr4 92174290 92174398 -92114264 + MER5A DNA MER1_type 84 189 0 622 167 45 91 chr4 92175094 92175292 -92113370 - MER4A LTR ERV1 -475 189 1 2494 193 123 52 chr4 92175406 92176177 -92112485 - LTR1B LTR ERV1 0 826 1 482 62 0 0 chr4 92176853 92176918 -92111744 + MADE1 DNA Mariner 16 80 0 195 114 0 0 chr4 92177573 92177608 -92111054 + (GA)n Simple_repeat Simple_repeat 1 35 0 358 339 0 8 chr4 92180038 92180168 -92108494 + LTR16C LTR ERVL 363 491 0 837 214 42 23 chr4 92181035 92181250 -92107412 - L1MB5 LINE L1 -2 6172 5954 229 273 40 20 chr4 92181346 92181445 -92107217 - MER46C DNA MER2_type -1 337 237 3147 173 39 3 chr4 92181490 92182108 -92106554 - L1MB1 LINE L1 -1 6167 5528 1445 164 9 24 chr4 92182111 92182287 -92106375 - L1MB1 LINE L1 -717 5451 5274 2588 113 3 0 chr4 92182287 92182650 -92106012 - THE1B LTR MaLR 0 364 1 1445 164 9 24 chr4 92182650 92182865 -92105797 - L1MB1 LINE L1 -894 5274 5066 * 1789 210 46 2 chr4 92182864 92183360 -92105302 + L1 LINE L1 2990 3507 -2639 22 0 0 0 chr4 92183676 92183698 -92104964 + AT_rich Low_complexity Low_complexity 1 22 0 2235 234 87 65 chr4 92184377 92185240 -92103422 + MER97a DNA MER1_type? 13 894 0 1089 222 67 77 chr4 92185527 92185706 -92102956 + LTR52 LTR ERVL 2 181 -240 2526 58 0 3 chr4 92185706 92186018 -92102644 + AluY SINE Alu 1 311 0 1089 222 67 77 chr4 92186018 92186243 -92102419 + LTR52 LTR ERVL 181 402 -19 30 45 0 0 chr4 92186424 92186468 -92102194 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr4 92186882 92186904 -92101758 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr4 92187193 92187222 -92101440 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4 92187873 92187896 -92100766 + AT_rich Low_complexity Low_complexity 1 23 0 240 282 42 46 chr4 92188186 92188445 -92100217 + L1M4 LINE L1 2131 2388 -3758 263 185 43 0 chr4 92188541 92188633 -92100029 + (TA)n Simple_repeat Simple_repeat 1 96 0 542 204 72 60 chr4 92188633 92188800 -92099862 - MLT1A2 LTR MaLR -179 195 27 368 261 139 57 chr4 92189020 92189300 -92099362 + L1M4 LINE L1 2782 3084 -3062 334 350 25 0 chr4 92189366 92189523 -92099139 + MER20 DNA MER1_type 38 198 -21 625 295 43 64 chr4 92189599 92189947 -92098715 + L1MA4A LINE L1 5515 5802 -360 1359 197 45 71 chr4 92190196 92190577 -92098085 - MLT1A2 LTR MaLR 0 374 4 1826 144 58 19 chr4 92191033 92191394 -92097268 - THE1C LTR MaLR 0 375 1 2248 118 39 34 chr4 92191394 92191776 -92096886 - THE1C-int LTR MaLR 0 1580 1197 1089 72 0 209 chr4 92191774 92192037 -92096625 - THE1C-int LTR MaLR -1372 208 1 * 1074 160 80 30 chr4 92192037 92192274 -92096388 - THE1C LTR MaLR 0 375 127 4739 111 7 1 chr4 92192274 92192988 -92095674 + L1PB1 LINE L1 5434 6151 0 39 22 0 0 chr4 92192988 92193034 -92095628 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr4 92194387 92194416 -92094246 + AT_rich Low_complexity Low_complexity 1 29 0 201 277 0 0 chr4 92194895 92194942 -92093720 + L2 LINE L2 1758 1804 -1510 225 291 105 0 chr4 92195013 92195099 -92093563 + L2 LINE L2 936 1030 -2284 347 346 16 5 chr4 92195135 92195320 -92093342 + L2 LINE L2 1957 2143 -1171 333 334 87 61 chr4 92195367 92195825 -92092837 + L2 LINE L2 2840 3309 -4 37 23 0 0 chr4 92196623 92196667 -92091995 + AT_rich Low_complexity Low_complexity 1 44 0 585 281 94 67 chr4 92197308 92198769 -92089893 - L1MEc LINE L1 -2171 4044 2545 306 331 24 24 chr4 92198829 92198953 -92089709 + L2 LINE L2 3189 3312 -1 374 262 229 45 chr4 92199013 92199414 -92089248 - L1MEc LINE L1 -3913 2483 2009 315 427 23 0 chr4 92199569 92199789 -92088873 - L1MEc LINE L1 -4573 1823 1599 369 39 20 0 chr4 92199796 92199847 -92088815 + MADE1 DNA Mariner 1 52 -28 491 127 13 0 chr4 92199857 92199936 -92088726 + MADE1 DNA Mariner 1 80 0 234 261 29 14 chr4 92199944 92200013 -92088649 - HAL1 LINE L1 -937 1570 1501 2018 109 3 51 chr4 92200198 92200511 -92088151 - AluSx SINE Alu -14 298 1 212 393 48 40 chr4 92201737 92201989 -92086673 - L2 LINE L2 -208 3064 2811 22 35 0 0 chr4 92202013 92202042 -92086620 + AT_rich Low_complexity Low_complexity 1 29 0 2119 108 7 0 chr4 92202046 92202333 -92086329 - AluSq SINE Alu -21 292 4 1242 40 0 0 chr4 92202673 92202856 -92085806 + AluY SINE Alu 132 314 0 1664 183 3 10 chr4 92203367 92203841 -92084821 + AluJb SINE Alu 1 472 0 237 65 0 0 chr4 92203841 92203872 -92084790 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 733 323 95 15 chr4 92203893 92204293 -92084369 + MLT1J2 LTR MaLR 3 434 -16 1505 230 99 33 chr4 92204435 92204922 -92083740 - LTR40a LTR ERVL 0 519 1 296 315 40 27 chr4 92204956 92205105 -92083557 - MIR3 SINE MIR -1 207 57 185 384 29 43 chr4 92205307 92205445 -92083217 + L2 LINE L2 3051 3186 -86 2110 135 0 3 chr4 92205502 92205806 -92082856 + AluSx SINE Alu 1 303 -9 25 51 0 0 chr4 92206518 92206557 -92082105 + AT_rich Low_complexity Low_complexity 1 39 0 2403 163 24 5 chr4 92206749 92207167 -92081495 - MSTB LTR MaLR 0 426 1 1575 236 30 47 chr4 92207250 92207741 -92080921 + MLT1D LTR MaLR 21 503 -2 399 297 44 57 chr4 92207880 92208246 -92080416 + MLT1H LTR MaLR 76 543 -6 274 371 8 8 chr4 92209088 92209212 -92079450 + L2 LINE L2 3182 3305 -8 192 77 0 0 chr4 92210507 92210533 -92078129 + (CAAT)n Simple_repeat Simple_repeat 2 27 0 443 325 26 31 chr4 92210551 92210779 -92077883 - L2 LINE L2 -19 3294 3068 1844 270 89 56 chr4 92210946 92212002 -92076660 + L1ME1 LINE L1 945 2035 -4361 321 175 0 0 chr4 92212503 92212566 -92076096 + HSMAR1 DNA Mariner 1 63 -1224 5777 95 15 4 chr4 92212575 92213362 -92075300 + HSMAR1 DNA Mariner 492 1287 0 2951 318 56 30 chr4 92213363 92214811 -92073851 + ERVL LTR ERVL 1001 2486 -3278 3795 303 24 53 chr4 92214856 92216047 -92072615 + ERVL LTR ERVL 3879 5016 -748 1718 163 3 23 chr4 92216047 92216347 -92072315 + AluJo SINE Alu 1 294 -18 3795 303 24 53 chr4 92216347 92216724 -92071938 + ERVL LTR ERVL 5016 5402 -362 312 291 86 51 chr4 92217070 92217245 -92071417 + LTR41 LTR ERVL 6 186 -587 337 161 36 71 chr4 92217788 92217900 -92070762 + LTR41 LTR ERVL 660 767 -6 1794 247 35 40 chr4 92217908 92218563 -92070099 + L1ME1 LINE L1 3930 4581 -1634 23 0 0 0 chr4 92218632 92218655 -92070007 + AT_rich Low_complexity Low_complexity 1 23 0 1134 214 41 41 chr4 92218656 92218997 -92069665 + L1ME1 LINE L1 5033 5373 -842 413 225 69 44 chr4 92219030 92219190 -92069472 + L1ME1 LINE L1 5349 5509 -726 435 92 0 31 chr4 92219190 92219255 -92069407 + THE1C LTR MaLR 1 63 -312 982 232 97 28 chr4 92219274 92219615 -92069047 + L1ME1 LINE L1 5723 6086 -161 2339 136 83 5 chr4 92219925 92220322 -92068340 - MSTA LTR MaLR 0 428 1 1440 204 19 7 chr4 92220776 92221045 -92067617 + AluJo SINE Alu 1 272 -40 222 37 0 0 chr4 92221045 92221072 -92067590 + (TC)n Simple_repeat Simple_repeat 2 28 0 409 107 0 27 chr4 92221098 92221173 -92067489 + (TA)n Simple_repeat Simple_repeat 2 74 0 251 232 0 0 chr4 92221462 92221518 -92067144 + (TA)n Simple_repeat Simple_repeat 2 57 0 402 147 0 0 chr4 92221518 92221586 -92067076 + MLT2A2 LTR ERVL 386 453 0 252 316 94 17 chr4 92221777 92221894 -92066768 + MIR SINE MIR 18 143 -65 21 57 0 0 chr4 92222308 92222343 -92066319 + AT_rich Low_complexity Low_complexity 1 35 0 2689 73 0 0 chr4 92223979 92224335 -92064327 - L1PA8 LINE L1 -13 6159 5804 7456 32 0 0 chr4 92224548 92226120 -92062542 + L1PA4 LINE L1 4558 6129 -26 275 48 0 24 chr4 92226122 92226164 -92062498 + (TAAAA)n Simple_repeat Simple_repeat 1 41 0 2027 165 64 57 chr4 92227945 92228369 -92060293 + MLT2B2 LTR ERVL 89 515 0 683 328 12 8 chr4 92228369 92228610 -92060052 + MIR SINE MIR 21 262 0 483 203 16 65 chr4 92228831 92228954 -92059708 - L2 LINE L2 0 3313 3197 501 319 117 17 chr4 92229056 92229354 -92059308 - L2 LINE L2 -340 2974 2647 1503 224 103 5 chr4 92233107 92233532 -92055130 + MLT1C LTR MaLR 1 467 0 259 374 146 0 chr4 92234200 92234323 -92054339 - MIR SINE MIR -120 142 2 632 201 0 0 chr4 92234975 92235109 -92053553 - L1 LINE L1 -3691 2455 2322 2751 169 55 6 chr4 92235109 92235650 -92053012 + L1PA16 LINE L1 5590 6159 -7 404 287 44 0 chr4 92235768 92235904 -92052758 - MLT1I LTR MaLR -256 153 12 534 281 15 15 chr4 92236136 92236271 -92052391 - MLT1J2 LTR MaLR -244 206 72 242 301 84 21 chr4 92237611 92237754 -92050908 - MIR SINE MIR -83 179 28 247 359 48 0 chr4 92238321 92238424 -92050238 + MIR3 SINE MIR 92 199 -9 308 289 20 86 chr4 92238811 92238876 -92049786 + MIR3 SINE MIR 58 126 -82 1378 226 27 0 chr4 92238876 92239173 -92049489 + AluJo SINE Alu 1 305 -7 308 289 20 86 chr4 92239173 92239259 -92049403 + MIR3 SINE MIR 126 199 -9 1819 146 55 6 chr4 92239934 92240277 -92048385 - L1MA6 LINE L1 0 6300 5941 3889 146 15 16 chr4 92240277 92241226 -92047436 + L1MA6 LINE L1 4991 5941 -359 225 0 0 0 chr4 92242566 92242591 -92046071 + (CA)n Simple_repeat Simple_repeat 2 26 0 448 97 0 58 chr4 92242949 92243052 -92045610 + (TTTC)n Simple_repeat Simple_repeat 4 100 0 224 407 111 31 chr4 92244193 92244581 -92044081 + L2 LINE L2 2854 3272 0 300 295 82 41 chr4 92244609 92244731 -92043931 - L1ME LINE L1 -521 5600 5474 23 68 0 0 chr4 92244742 92244786 -92043876 + AT_rich Low_complexity Low_complexity 1 44 0 1585 185 78 0 chr4 92244974 92245293 -92043369 - L1MC2 LINE L1 -13 6331 5988 234 143 0 0 chr4 92245298 92245333 -92043329 + tRNA-Tyr-TAC tRNA tRNA 1 35 -41 2211 103 0 19 chr4 92245400 92245712 -92042950 - AluY SINE Alu -5 306 1 260 421 23 37 chr4 92246275 92246489 -92042173 + L2 LINE L2 3032 3242 -30 231 280 84 28 chr4 92247084 92247191 -92041471 - MIR SINE MIR -16 246 134 1545 227 99 108 chr4 92247196 92248142 -92040520 + LTR1B LTR ERV1 1 1020 0 745 257 59 13 chr4 92248519 92248756 -92039906 + MIR SINE MIR 15 262 0 372 159 0 0 chr4 92249466 92249529 -92039133 - L1PA16 LINE L1 -9 6157 6095 607 278 17 28 chr4 92249661 92249837 -92038825 + MIR SINE MIR 88 261 -1 583 263 74 0 chr4 92249938 92250181 -92038481 - MER20B DNA MER1_type -1 782 522 2060 118 0 14 chr4 92251567 92251855 -92036807 - AluSx SINE Alu -19 293 10 411 298 144 5 chr4 92253795 92253983 -92034679 + MIR SINE MIR 31 244 -18 195 129 0 0 chr4 92253986 92254017 -92034645 + (ATG)n Simple_repeat Simple_repeat 3 33 0 705 198 0 0 chr4 92254300 92254421 -92034241 - FLAM_A SINE Alu -11 122 2 879 186 0 42 chr4 92254442 92254609 -92034053 + FRAM SINE Alu 1 160 -16 1547 182 54 54 chr4 92254795 92255168 -92033494 + MLT1A2 LTR MaLR 1 373 -1 398 302 71 80 chr4 92256666 92256977 -92031685 + L3 LINE CR1 282 589 -988 2148 116 3 0 chr4 92257333 92257618 -92031044 - AluSc SINE Alu -22 287 2 273 286 102 0 chr4 92257633 92257731 -92030931 - MIR SINE MIR -5 257 150 2346 114 22 19 chr4 92258547 92258908 -92029754 - THE1B LTR MaLR 0 364 3 9911 121 25 27 chr4 92258910 92260493 -92028169 - THE1B-int LTR MaLR 0 1580 1 2273 104 71 6 chr4 92260497 92260834 -92027828 - THE1B LTR MaLR -5 359 1 23 33 0 0 chr4 92261576 92261606 -92027056 + AT_rich Low_complexity Low_complexity 1 30 0 197 161 0 0 chr4 92262715 92262746 -92025916 - L2 LINE L2 -95 3218 3188 370 369 106 28 chr4 92262996 92263467 -92025195 - L2 LINE L2 -475 2839 2332 1434 225 98 23 chr4 92263474 92264041 -92024621 + L1ME2 LINE L1 5448 6075 -89 337 266 0 13 chr4 92264045 92264124 -92024538 - MER2 DNA MER2_type -1 344 267 955 207 0 0 chr4 92264214 92264378 -92024284 - MER2 DNA MER2_type -180 165 2 406 343 123 36 chr4 92264464 92265149 -92023513 - L2 LINE L2 -1039 2275 1532 245 209 0 0 chr4 92265329 92265372 -92023290 - MER2 DNA MER2_type -1 344 302 897 194 12 0 chr4 92265497 92265657 -92023005 - MER2 DNA MER2_type -183 162 1 1039 254 79 55 chr4 92266114 92266606 -92022056 - MLT1D LTR MaLR 0 505 2 207 0 0 0 chr4 92266701 92266724 -92021938 + (CA)n Simple_repeat Simple_repeat 1 23 0 303 290 250 10 chr4 92267279 92267479 -92021183 - MIR SINE MIR -2 260 13 1464 181 129 6 chr4 92267586 92267911 -92020751 + MLT1A1 LTR MaLR 1 365 0 36 94 0 0 chr4 92267920 92268026 -92020636 + AT_rich Low_complexity Low_complexity 1 106 0 22 35 0 0 chr4 92268090 92268119 -92020543 + AT_rich Low_complexity Low_complexity 1 29 0 252 122 0 0 chr4 92268283 92268324 -92020338 + (TG)n Simple_repeat Simple_repeat 2 42 0 21 36 0 0 chr4 92268939 92268967 -92019695 + AT_rich Low_complexity Low_complexity 1 28 0 921 198 160 78 chr4 92268971 92269315 -92019347 - MLT1B LTR MaLR -16 374 3 1014 324 64 23 chr4 92270077 92270558 -92018104 - L2 LINE L2 0 3313 2813 1452 312 53 11 chr4 92273076 92273828 -92014834 + L1MD2 LINE L1 145 955 -5588 1477 244 68 21 chr4 92273830 92274363 -92014299 + L1MD2 LINE L1 1608 2165 -4375 574 239 77 35 chr4 92274443 92274577 -92014085 + L1MD2 LINE L1 2327 2454 -4086 6936 61 6 0 chr4 92274577 92275746 -92012916 + L1PA7 LINE L1 4976 6154 0 574 239 77 35 chr4 92275746 92275871 -92012791 + L1MD2 LINE L1 2454 2597 -3943 2983 221 22 96 chr4 92275894 92276377 -92012285 + L1MD2 LINE L1 4866 5383 -1370 298 233 0 0 chr4 92276377 92276450 -92012212 + LTR30 LTR ERV1 552 624 -98 2983 221 22 96 chr4 92276450 92277940 -92010722 + L1MD2 LINE L1 5383 6751 -2 39 60 0 0 chr4 92278199 92278266 -92010396 + AT_rich Low_complexity Low_complexity 1 67 0 618 265 41 41 chr4 92278803 92279022 -92009640 - MER20 DNA MER1_type 0 219 1 300 27 0 0 chr4 92279664 92279701 -92008961 + (TG)n Simple_repeat Simple_repeat 2 38 0 23 78 0 0 chr4 92279823 92279874 -92008788 + AT_rich Low_complexity Low_complexity 1 51 0 2847 181 42 8 chr4 92279876 92280502 -92008160 + L1MA4 LINE L1 3914 4560 -1586 670 156 39 117 chr4 92280503 92280708 -92007954 - MER51C LTR ERV1 0 640 452 3240 173 10 14 chr4 92280959 92282398 -92006264 + L1MA4 LINE L1 4542 6020 -280 330 209 35 0 chr4 92282402 92282488 -92006174 + L1MB3 LINE L1 6087 6175 -8 364 288 27 0 chr4 92282709 92282820 -92005842 - MER103 DNA DNA -22 144 31 261 83 0 0 chr4 92283337 92283373 -92005289 + (TG)n Simple_repeat Simple_repeat 2 37 0 201 175 0 0 chr4 92283414 92283454 -92005208 + (TTA)n Simple_repeat Simple_repeat 2 41 0 278 309 29 57 chr4 92284564 92284739 -92003923 + MIR SINE MIR 30 199 -63 950 319 98 3 chr4 92284834 92285169 -92003493 + MLT1J LTR MaLR 28 394 -117 237 286 0 0 chr4 92285279 92285335 -92003327 - L2 LINE L2 -75 3238 3183 23 54 0 0 chr4 92286375 92286412 -92002250 + AT_rich Low_complexity Low_complexity 1 37 0 341 355 46 24 chr4 92286501 92286740 -92001922 + L2 LINE L2 2825 3066 -247 255 274 32 63 chr4 92286816 92286911 -92001751 + L2 LINE L2 3222 3313 0 219 247 0 43 chr4 92288105 92288198 -92000464 + A-rich Low_complexity Low_complexity 4 92 0 520 207 8 8 chr4 92289468 92289589 -91999073 - L1MC5 LINE L1 -36 7925 7805 242 93 0 23 chr4 92289719 92289762 -91998900 + (CA)n Simple_repeat Simple_repeat 2 43 0 306 365 127 0 chr4 92291253 92291434 -91997228 + MIR SINE MIR 59 262 0 21 36 0 0 chr4 92291526 92291554 -91997108 + AT_rich Low_complexity Low_complexity 1 28 0 1061 126 30 40 chr4 92292528 92292726 -91995936 - THE1C LTR MaLR 0 375 180 3418 140 78 19 chr4 92292735 92293312 -91995350 + THE1C-int LTR MaLR 970 1580 0 796 105 53 111 chr4 92293312 92293483 -91995179 + THE1C LTR MaLR 1 161 -214 2103 125 0 0 chr4 92293483 92293772 -91994890 - AluSg SINE Alu -21 289 1 360 87 0 0 chr4 92293772 92293818 -91994844 + MSTA LTR MaLR 383 428 0 27 62 0 0 chr4 92295204 92295252 -91993410 + AT_rich Low_complexity Low_complexity 1 48 0 375 294 96 40 chr4 92296072 92296327 -91992335 + L1ME3 LINE L1 5703 5969 -209 28 0 0 0 chr4 92296327 92296355 -91992307 + AT_rich Low_complexity Low_complexity 1 28 0 2131 78 0 0 chr4 92296355 92296624 -91992038 - AluY SINE Alu -27 284 16 443 286 38 8 chr4 92296745 92296878 -91991784 - MIR SINE MIR -101 161 25 192 40 0 0 chr4 92297067 92297092 -91991570 + (TA)n Simple_repeat Simple_repeat 2 26 0 564 289 43 36 chr4 92297532 92297785 -91990877 - MIR SINE MIR -2 260 6 576 135 22 0 chr4 92297872 92297961 -91990701 - MLT1B LTR MaLR 0 390 300 2637 247 39 18 chr4 92298155 92298928 -91989734 - L1ME2 LINE L1 -15 6149 5361 13913 151 22 9 chr4 92298937 92301301 -91987361 + Tigger1 DNA MER2_type 26 2418 0 595 272 48 16 chr4 92301301 92301614 -91987048 - L1ME2 LINE L1 -784 5362 5040 180 77 0 0 chr4 92301627 92301653 -91987009 + (TAGA)n Simple_repeat Simple_repeat 1 26 0 1756 241 17 39 chr4 92301653 92302114 -91986548 - MLT2B1 LTR ERVL -69 451 1 422 219 38 0 chr4 92302114 92302219 -91986443 - L1ME2 LINE L1 -1217 4929 4821 352 246 123 18 chr4 92302397 92302511 -91986151 - MER58C DNA MER1_type 0 215 90 2060 122 3 0 chr4 92303542 92303836 -91984826 - AluSc SINE Alu -14 295 1 328 269 62 23 chr4 92304249 92304379 -91984283 - MIR SINE MIR -60 202 68 1769 133 34 88 chr4 92306277 92306662 -91982000 - THE1B LTR MaLR 0 364 1 547 285 136 14 chr4 92308144 92308365 -91980297 - MIR SINE MIR -12 250 3 466 342 52 21 chr4 92309604 92310004 -91978658 - L1MC/D LINE L1 -743 5403 5122 214 278 14 143 chr4 92310755 92310873 -91977789 - MIR SINE MIR -55 207 127 2228 93 3 0 chr4 92310873 92311164 -91977498 + AluSp SINE Alu 6 297 -16 214 278 14 143 chr4 92311164 92311261 -91977401 - MIR SINE MIR -135 127 19 1363 283 84 17 chr4 92311419 92311885 -91976777 + MLT1G1 LTR MaLR 73 569 -26 241 385 22 22 chr4 92312020 92312199 -91976463 - MIR SINE MIR -36 226 48 2520 155 21 0 chr4 92313416 92313835 -91974827 + MSTA LTR MaLR 1 428 0 352 0 0 0 chr4 92314141 92314183 -91974479 - L1PA3 LINE L1 -180 5975 5934 210 303 110 9 chr4 92314200 92314309 -91974353 - L2 LINE L2 -1458 1856 1737 778 147 28 12 chr4 92314394 92314794 -91973868 + (TA)n Simple_repeat Simple_repeat 1 406 0 658 272 94 30 chr4 92314802 92315195 -91973467 - L2 LINE L2 -1640 1674 1257 469 323 112 54 chr4 92315209 92315377 -91973285 - L2 LINE L2 -2940 374 217 2443 41 3 3 chr4 92315377 92315668 -91972994 + AluY SINE Alu 1 291 -20 469 323 112 54 chr4 92315668 92315830 -91972832 - L2 LINE L2 -3097 217 25 628 336 44 29 chr4 92315890 92316205 -91972457 + LTR16C LTR ERVL 4 323 -168 21 36 0 0 chr4 92316268 92316296 -91972366 + AT_rich Low_complexity Low_complexity 1 28 0 471 277 158 18 chr4 92316394 92316722 -91971940 + HAL1 LINE L1 2023 2396 -111 3636 99 154 3 chr4 92316878 92317476 -91971186 - LTR12 LTR ERV1 0 688 1 408 193 147 68 chr4 92317555 92317820 -91970842 - pTR5 LTR ERV1 -1410 1028 743 286 303 0 22 chr4 92317848 92317937 -91970725 + GA-rich Low_complexity Low_complexity 3 89 0 552 149 0 0 chr4 92318311 92318405 -91970257 + (TCCC)n Simple_repeat Simple_repeat 3 96 0 285 69 35 35 chr4 92318723 92318781 -91969881 + (TTTCC)n Simple_repeat Simple_repeat 3 60 0 779 169 0 0 chr4 92319076 92319206 -91969456 - L1MB4 LINE L1 -37 6143 6014 198 295 33 0 chr4 92319486 92319547 -91969115 - L2 LINE L2 -1381 1933 1871 2152 136 3 0 chr4 92319731 92320039 -91968623 + AluSx SINE Alu 1 309 -3 2573 38 0 3 chr4 92320191 92320506 -91968156 - L1P2 LINE L1 -540 5614 5301 1048 173 35 31 chr4 92320531 92320757 -91967905 + L1M1 LINE L1 924 1150 -6415 * 3375 193 7 49 chr4 92320751 92321439 -91967223 - L1M1 LINE L1 -6788 777 119 31 88 0 0 chr4 92321677 92321757 -91966905 + AT_rich Low_complexity Low_complexity 1 80 0 285 29 0 0 chr4 92322596 92322630 -91966032 + (CA)n Simple_repeat Simple_repeat 2 35 0 838 292 63 68 chr4 92323015 92323721 -91964941 + L2 LINE L2 2593 3306 -7 24 32 0 0 chr4 92327162 92327193 -91961469 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr4 92327349 92327371 -91961291 + AT_rich Low_complexity Low_complexity 1 22 0 230 200 0 18 chr4 92327934 92327989 -91960673 + T-rich Low_complexity Low_complexity 5 58 0 791 245 20 5 chr4 92328018 92328218 -91960444 + L1MEc LINE L1 40 242 -6154 1890 249 98 28 chr4 92328229 92328552 -91960110 + L1MEc LINE L1 470 769 -5627 1742 205 25 3 chr4 92328552 92328908 -91959754 + MLT1A1 LTR MaLR 1 364 -1 1890 249 98 28 chr4 92328908 92329298 -91959364 + L1MEc LINE L1 769 1233 -5163 875 186 6 12 chr4 92329371 92329532 -91959130 + FRAM SINE Alu 1 159 -17 263 259 134 45 chr4 92330481 92330593 -91958069 - MIR SINE MIR -44 218 97 268 277 72 12 chr4 92330649 92330732 -91957930 - MIR SINE MIR -97 111 24 21 0 0 0 chr4 92330942 92330963 -91957699 + AT_rich Low_complexity Low_complexity 1 21 0 1876 108 32 11 chr4 92331370 92331741 -91956921 + AluSx SINE Alu 1 377 0 683 329 24 4 chr4 92333621 92333870 -91954792 + L2 LINE L2 1984 2237 -1077 216 0 0 0 chr4 92333877 92333901 -91954761 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 923 291 67 70 chr4 92333902 92334719 -91953943 + L2 LINE L2 2512 3312 -1 637 300 94 14 chr4 92335174 92335397 -91953265 + MIR SINE MIR 20 260 -2 953 342 57 20 chr4 92336295 92336783 -91951879 + L2 LINE L2 2807 3312 -1 21 82 0 0 chr4 92336800 92336849 -91951813 + AT_rich Low_complexity Low_complexity 1 49 0 1756 162 55 28 chr4 92336871 92337235 -91951427 - THE1C LTR MaLR 0 375 2 1044 308 59 18 chr4 92338732 92339170 -91949492 + LTR16B LTR ERVL 1 456 -8 204 40 0 0 chr4 92339305 92339330 -91949332 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 188 351 9 35 chr4 92339581 92339695 -91948967 + L2 LINE L2 2964 3074 -198 195 346 19 0 chr4 92340075 92340127 -91948535 - L2 LINE L2 -109 3163 3111 2129 137 42 8 chr4 92340363 92340512 -91948150 + L1MA5 LINE L1 5886 6028 -272 2359 63 0 22 chr4 92340512 92340830 -91947832 + AluY SINE Alu 1 311 0 2129 137 42 8 chr4 92340830 92341081 -91947581 + L1MA5 LINE L1 6028 6300 0 202 316 35 0 chr4 92341344 92341401 -91947261 - L2 LINE L2 -8 3305 3247 28 86 0 0 chr4 92341513 92341583 -91947079 + AT_rich Low_complexity Low_complexity 1 70 0 22 35 0 0 chr4 92342357 92342386 -91946276 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr4 92342791 92342827 -91945835 + AT_rich Low_complexity Low_complexity 1 36 0 2162 237 63 43 chr4 92343938 92344262 -91944400 - L1MC/D LINE L1 -743 5403 5087 889 38 0 0 chr4 92344262 92344367 -91944295 - U6 snRNA snRNA -2 105 1 2162 237 63 43 chr4 92344367 92345116 -91943546 - L1MC/D LINE L1 -1059 5087 4431 * 4077 267 58 81 chr4 92345115 92346727 -91941935 + L1MC3 LINE L1 5531 7201 -584 531 229 25 0 chr4 92346727 92346849 -91941813 + MLT1F1 LTR MaLR 1 125 -442 4077 267 58 81 chr4 92346849 92347412 -91941250 + L1MC3 LINE L1 7201 7775 -10 1331 206 102 53 chr4 92348367 92348760 -91939902 + MLT1C LTR MaLR 1 412 -55 288 238 60 0 chr4 92349140 92349224 -91939438 + L1ME LINE L1 5561 5649 -472 306 341 6 60 chr4 92349380 92349562 -91939100 - L2 LINE L2 -258 3055 2884 342 0 0 0 chr4 92349610 92349648 -91939014 + (CA)n Simple_repeat Simple_repeat 2 39 0 288 0 0 0 chr4 92349920 92349952 -91938710 + (CA)n Simple_repeat Simple_repeat 1 32 0 1192 243 59 51 chr4 92350435 92350826 -91937836 - MSTD LTR MaLR 0 396 3 620 286 42 14 chr4 92351115 92351332 -91937330 - MIR SINE MIR 0 262 40 26 0 0 0 chr4 92351371 92351397 -91937265 + AT_rich Low_complexity Low_complexity 1 26 0 2289 42 7 11 chr4 92353419 92353706 -91934956 + AluY SINE Alu 23 308 -3 252 0 0 0 chr4 92355382 92355410 -91933252 + (TG)n Simple_repeat Simple_repeat 2 29 0 214 171 0 0 chr4 92355410 92355445 -91933217 + (CATA)n Simple_repeat Simple_repeat 2 36 0 1186 214 42 93 chr4 92355532 92356004 -91932658 - MER39 LTR ERV1 -1 706 259 247 244 294 56 chr4 92358393 92358573 -91930089 - MIR SINE MIR -11 251 29 244 271 25 25 chr4 92358980 92359098 -91929564 + HAL1 LINE L1 1343 1460 -1047 237 65 0 0 chr4 92359255 92359286 -91929376 + (CA)n Simple_repeat Simple_repeat 2 32 0 1589 157 51 34 chr4 92359479 92359772 -91928890 + AluJb SINE Alu 1 298 -14 194 328 17 0 chr4 92360472 92360530 -91928132 - MIR SINE MIR -110 152 94 234 0 0 0 chr4 92360557 92360583 -91928079 + (TTTTC)n Simple_repeat Simple_repeat 5 30 0 1735 173 0 14 chr4 92360586 92360870 -91927792 - AluJo SINE Alu -29 283 4 871 316 70 50 chr4 92361639 92361743 -91926919 + MER45C DNA AcHobo 1 101 -852 2275 73 0 0 chr4 92361743 92362123 -91926539 - AluY SINE Alu 0 380 1 871 316 70 50 chr4 92362123 92362573 -91926089 + MER45C DNA AcHobo 101 568 -385 307 200 0 0 chr4 92362598 92362653 -91926009 + MER45C DNA AcHobo 899 953 0 380 271 97 69 chr4 92362654 92362914 -91925748 + L1MC4a LINE L1 5398 5573 -548 1829 120 7 10 chr4 92362914 92363213 -91925449 + AluY SINE Alu 1 298 -13 380 271 97 69 chr4 92363213 92363466 -91925196 + L1MC4a LINE L1 5573 5817 -304 808 226 185 10 chr4 92363679 92363971 -91924691 - MER2 DNA MER2_type -1 344 2 366 147 0 0 chr4 92363971 92364039 -91924623 + (TA)n Simple_repeat Simple_repeat 2 69 0 2215 84 3 7 chr4 92364171 92364470 -91924192 - AluSg1 SINE Alu -11 298 1 201 197 0 0 chr4 92367382 92367443 -91921219 + (TA)n Simple_repeat Simple_repeat 1 61 0 227 270 40 0 chr4 92367493 92367567 -91921095 - Charlie7 DNA MER1_type -2504 108 32 297 218 0 0 chr4 92368127 92368182 -91920480 - L2 LINE L2 0 3313 3259 403 301 87 47 chr4 92369132 92369385 -91919277 - MIR SINE MIR -1 261 2 2148 170 19 17 chr4 92369731 92370149 -91918513 + L1MA7 LINE L1 5848 6266 -25 267 374 38 15 chr4 92371095 92371226 -91917436 - L2 LINE L2 -1 3271 3138 21 36 0 0 chr4 92371609 92371637 -91917025 + AT_rich Low_complexity Low_complexity 1 28 0 793 184 0 20 chr4 92372264 92372411 -91916251 - LTR39 LTR ERV1 -63 720 577 4924 158 24 12 chr4 92372416 92373318 -91915344 - L1PA16 LINE L1 0 6166 5254 1119 267 78 42 chr4 92374037 92374397 -91914265 + MLT1E2 LTR MaLR 162 534 -92 785 321 25 4 chr4 92374496 92374736 -91913926 + MIR SINE MIR 15 259 -3 399 290 10 0 chr4 92375315 92375415 -91913247 - MER5A DNA MER1_type -83 106 6 363 296 11 40 chr4 92377071 92377247 -91911415 + CT-rich Low_complexity Low_complexity 3 173 0 417 209 58 29 chr4 92377481 92377620 -91911042 - MER69 DNA AcHobo 0 2526 2384 334 182 0 0 chr4 92377772 92377827 -91910835 - MER69 DNA AcHobo -122 55 1 1085 137 65 92 chr4 92377890 92378182 -91910480 - L1MA8 LINE L1 -4 6287 6004 5297 183 47 44 chr4 92379351 92380699 -91907963 - L1MC1 LINE L1 -5 6328 4960 1695 191 3 3 chr4 92380699 92381008 -91907654 - AluJo SINE Alu -3 309 1 5297 183 47 44 chr4 92381008 92381895 -91906767 - L1MC1 LINE L1 -1373 4960 4077 1515 138 44 51 chr4 92381866 92381907 -91906755 - L1P4 LINE L1 -404 5759 5719 * 1472 94 5 5 chr4 92381907 92382120 -91906542 - L1PA13 LINE L1 -19 6144 5932 1515 138 44 51 chr4 92382120 92382374 -91906288 - L1P4 LINE L1 -444 5719 5466 2317 103 0 0 chr4 92382374 92382686 -91905976 + AluSx SINE Alu 1 312 0 4173 189 27 10 chr4 92382687 92383602 -91905060 + L1P LINE L1 2820 3750 -2396 1742 204 41 37 chr4 92383596 92384058 -91904604 - L1MC1 LINE L1 -2062 4084 3621 * 217 282 61 69 chr4 92384146 92384277 -91904385 - MIR SINE MIR -11 251 122 721 300 48 28 chr4 92384805 92385055 -91903607 - MIR SINE MIR -5 257 3 266 274 124 54 chr4 92385650 92385817 -91902845 + MIR SINE MIR 85 262 0 28 61 0 0 chr4 92385824 92385873 -91902789 + AT_rich Low_complexity Low_complexity 1 49 0 38 0 0 0 chr4 92385916 92385954 -91902708 + AT_rich Low_complexity Low_complexity 1 38 0 2305 63 10 7 chr4 92387916 92388217 -91900445 + AluSc SINE Alu 1 302 -7 185 256 0 0 chr4 92388444 92388483 -91900179 + L2 LINE L2 3259 3297 -16 302 267 52 26 chr4 92389295 92389411 -91899251 + MLT1L LTR MaLR 362 480 -135 1701 124 27 119 chr4 92389441 92389812 -91898850 - MER1B DNA MER1_type 0 337 1 312 306 48 48 chr4 92391811 92391935 -91896727 + MIR SINE MIR 95 218 -44 288 277 64 0 chr4 92393477 92393571 -91895091 + L2 LINE L2 3173 3272 0 189 321 18 0 chr4 92393752 92393808 -91894854 - MER5A DNA MER1_type -1 188 132 351 279 85 16 chr4 92394107 92394236 -91894426 - MER5A DNA MER1_type -38 151 14 643 288 68 14 chr4 92394389 92394502 -91894160 + MIR SINE MIR 11 116 -146 198 0 0 0 chr4 92394502 92394524 -91894138 + (TG)n Simple_repeat Simple_repeat 2 23 0 643 288 68 14 chr4 92394524 92394629 -91894033 + MIR SINE MIR 116 241 -21 277 340 28 21 chr4 92395290 92395431 -91893231 - L2 LINE L2 -13 3300 3159 2560 39 0 6 chr4 92395526 92395837 -91892825 - AluY SINE Alu -2 309 1 391 292 20 105 chr4 92396577 92396882 -91891780 - L2 LINE L2 0 3313 3035 493 347 84 32 chr4 92398415 92398826 -91889836 + LTR16A LTR ERVL 17 452 -5 22 0 0 0 chr4 92399557 92399579 -91889083 + AT_rich Low_complexity Low_complexity 1 22 0 1607 190 7 7 chr4 92399583 92399878 -91888784 + AluJo SINE Alu 3 297 -15 24 53 0 0 chr4 92400041 92400079 -91888583 + AT_rich Low_complexity Low_complexity 1 38 0 24 53 0 0 chr4 92400119 92400157 -91888505 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr4 92400350 92400380 -91888282 + AT_rich Low_complexity Low_complexity 1 30 0 422 305 72 27 chr4 92400500 92400723 -91887939 - L1ME3A LINE L1 -222 5948 5716 2396 74 3 0 chr4 92400802 92401099 -91887563 + AluSp SINE Alu 3 300 -13 22 35 0 0 chr4 92401368 92401397 -91887265 + AT_rich Low_complexity Low_complexity 1 29 0 222 265 24 12 chr4 92401415 92401498 -91887164 + CT-rich Low_complexity Low_complexity 2 85 0 479 278 61 19 chr4 92402073 92402285 -91886377 - L1ME LINE L1 -303 5818 5598 34 72 0 0 chr4 92402317 92402386 -91886276 + AT_rich Low_complexity Low_complexity 1 69 0 3112 210 91 40 chr4 92402505 92403497 -91885165 - Charlie1a DNA MER1_type -5 1450 409 247 334 204 22 chr4 92403560 92404233 -91884429 - L2 LINE L2 -673 2641 1847 243 170 0 0 chr4 92405121 92405168 -91883494 + CT-rich Low_complexity Low_complexity 4 50 0 1208 269 26 10 chr4 92405688 92405993 -91882669 - Charlie1a DNA MER1_type -1139 316 7 465 327 34 24 chr4 92407962 92408170 -91880492 - L2 LINE L2 -1 3312 3103 272 207 298 8 chr4 92408352 92408473 -91880189 + MIR SINE MIR 52 207 -55 222 91 0 0 chr4 92409788 92409821 -91878841 + (TG)n Simple_repeat Simple_repeat 1 33 0 24 67 0 0 chr4 92410625 92410670 -91877992 + AT_rich Low_complexity Low_complexity 1 45 0 213 39 0 0 chr4 92411229 92411255 -91877407 + (TG)n Simple_repeat Simple_repeat 2 27 0 285 339 46 9 chr4 92411948 92412057 -91876605 + L3 LINE CR1 1460 1572 -5 357 323 8 0 chr4 92412265 92412392 -91876270 - MIR SINE MIR -3 259 132 291 316 45 38 chr4 92412607 92412740 -91875922 - L2 LINE L2 0 3313 3180 225 243 97 19 chr4 92413619 92413722 -91874940 + L1ME4a LINE L1 5940 6050 -71 180 111 0 0 chr4 92414502 92414529 -91874133 + (TC)n Simple_repeat Simple_repeat 2 28 0 1748 278 86 14 chr4 92414986 92415649 -91873013 + L2 LINE L2 2134 2844 -470 850 278 22 4 chr4 92415797 92416027 -91872635 + MIR SINE MIR 2 235 -27 384 326 111 33 chr4 92416058 92416328 -91872334 + L2 LINE L2 3023 3313 0 3085 221 36 24 chr4 92417524 92418450 -91870212 + L1ME1 LINE L1 5186 6119 -47 524 261 92 7 chr4 92418338 92418491 -91870171 + L1MA10 LINE L1 6169 6334 0 * 201 74 0 0 chr4 92419191 92419218 -91869444 + (T)n Simple_repeat Simple_repeat 1 27 0 2250 243 80 60 chr4 92419537 92420401 -91868261 + L1MCb LINE L1 250 1137 -5356 1804 172 16 53 chr4 92420401 92420778 -91867884 - MLT1A1 LTR MaLR -2 363 1 2250 243 80 60 chr4 92420778 92421295 -91867367 + L1MCb LINE L1 1137 1642 -4851 495 188 69 69 chr4 92421297 92421499 -91867163 + L1MCb LINE L1 2383 2584 -3980 * 789 218 26 50 chr4 92421495 92421766 -91866896 + L1MC3 LINE L1 1471 1775 -4653 180 0 0 0 chr4 92421766 92421786 -91866876 + (A)n Simple_repeat Simple_repeat 1 20 0 774 172 0 8 chr4 92421793 92421927 -91866735 + FLAM_C SINE Alu 1 133 -10 1248 208 169 37 chr4 92421938 92422481 -91866181 + L1MC3 LINE L1 1839 2309 -4117 183 80 0 0 chr4 92422481 92422506 -91866156 + (CG)n Simple_repeat Simple_repeat 1 25 0 180 0 0 0 chr4 92422505 92422525 -91866137 + (CA)n Simple_repeat Simple_repeat 1 20 0 * 1248 208 169 37 chr4 92422506 92422533 -91866129 + L1MC3 LINE L1 2309 2492 -3934 8421 223 71 58 chr4 92422546 92427318 -91861344 + L1MC3 LINE L1 2553 7477 -588 288 286 22 22 chr4 92427318 92427409 -91861253 + MLT1F1 LTR MaLR 35 125 -442 8421 223 71 58 chr4 92427409 92427990 -91860672 + L1MC3 LINE L1 7477 8049 -16 2777 116 17 2 chr4 92428120 92428542 -91860120 + MSTA LTR MaLR 1 428 0 9296 182 17 4 chr4 92428542 92430141 -91858521 + MSTA-int LTR MaLR 1 1619 -32 2487 146 46 2 chr4 92430141 92430551 -91858111 + MSTA LTR MaLR 1 428 0 246 305 73 60 chr4 92433114 92433265 -91855397 - MIR SINE MIR -75 187 35 1979 185 3 14 chr4 92433413 92433780 -91854882 + MLT1A1 LTR MaLR 1 363 -2 241 310 40 10 chr4 92433950 92434050 -91854612 - L2 LINE L2 -1 3312 3210 471 325 175 42 chr4 92434216 92434770 -91853892 - L2 LINE L2 -353 2961 2334 24 0 0 0 chr4 92435014 92435038 -91853624 + AT_rich Low_complexity Low_complexity 1 24 0 392 278 116 30 chr4 92435049 92435247 -91853415 - L2 LINE L2 -995 2319 2105 421 263 175 12 chr4 92435896 92436056 -91852606 - MER5A DNA MER1_type 0 189 4 26 30 0 0 chr4 92438008 92438041 -91850621 + AT_rich Low_complexity Low_complexity 1 33 0 22 70 0 0 chr4 92438582 92438625 -91850037 + AT_rich Low_complexity Low_complexity 1 43 0 1339 218 56 66 chr4 92439088 92439555 -91849107 - MLT1C LTR MaLR -1 466 5 3413 151 68 52 chr4 92440648 92441399 -91847263 + L1MA6 LINE L1 5532 6294 -6 24 32 0 0 chr4 92442289 92442320 -91846342 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 92442478 92442499 -91846163 + AT_rich Low_complexity Low_complexity 1 21 0 1246 277 81 46 chr4 92442739 92443350 -91845312 + MLT1G LTR MaLR 1 590 0 23 54 0 0 chr4 92443672 92443709 -91844953 + AT_rich Low_complexity Low_complexity 1 37 0 213 246 18 18 chr4 92444072 92444129 -91844533 - MIR SINE MIR -93 169 113 1906 141 73 17 chr4 92444200 92444555 -91844107 + THE1C LTR MaLR 1 375 0 203 140 40 20 chr4 92447650 92447700 -91840962 + (CAA)n Simple_repeat Simple_repeat 2 52 0 1459 232 95 6 chr4 92447755 92448091 -91840571 + LTR32 LTR ERVL 106 471 0 762 324 11 4 chr4 92448126 92448398 -91840264 - L2 LINE L2 -583 2731 2458 346 269 88 60 chr4 92448469 92448594 -91840068 - L1ME3A LINE L1 -254 5912 5780 1482 223 44 102 chr4 92448594 92449145 -91839517 - LTR40a LTR ERVL 0 519 1 346 269 88 60 chr4 92449145 92449238 -91839424 - L1ME3A LINE L1 -386 5780 5691 706 194 0 0 chr4 92449246 92449370 -91839292 - FLAM_C SINE Alu -19 124 1 249 385 14 0 chr4 92449444 92449587 -91839075 - L1ME3A LINE L1 -2252 5556 5412 342 279 86 68 chr4 92449647 92449927 -91838735 - L1ME3A LINE L1 -820 5326 5042 215 271 94 42 chr4 92450526 92450622 -91838040 + L2 LINE L2 2594 2694 -620 261 0 0 0 chr4 92450863 92450892 -91837770 + (CA)n Simple_repeat Simple_repeat 1 29 0 409 139 28 74 chr4 92451554 92451662 -91837000 - MER53 DNA DNA -29 160 58 244 223 31 8 chr4 92451759 92451889 -91836773 + (TA)n Simple_repeat Simple_repeat 1 133 0 505 169 99 42 chr4 92451922 92452064 -91836598 + MER53 DNA DNA 37 186 -3 1341 227 47 4 chr4 92452404 92452826 -91835836 - MER89 LTR ERV1 -19 540 1 23 33 0 0 chr4 92452919 92452949 -91835713 + AT_rich Low_complexity Low_complexity 1 30 0 701 191 0 62 chr4 92454061 92454223 -91834439 - LTR32 LTR ERVL -1 470 319 1819 176 33 9 chr4 92454279 92454609 -91834053 - LTR32 LTR ERVL -119 352 15 257 219 31 42 chr4 92456034 92456130 -91832532 + LTR16A1 LTR ERVL 265 359 -98 22 0 0 0 chr4 92456911 92456933 -91831729 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 92457668 92457689 -91830973 + AT_rich Low_complexity Low_complexity 1 21 0 1812 152 3 40 chr4 92458424 92458746 -91829916 - AluSx SINE Alu -2 310 1 700 190 29 27 chr4 92458746 92458913 -91829749 - LTR19C LTR ERV1 0 779 637 594 213 13 40 chr4 92458917 92459067 -91829595 - LTR9 LTR ERV1 -466 146 1 26 64 0 0 chr4 92460489 92460536 -91828126 + AT_rich Low_complexity Low_complexity 1 47 0 446 262 149 8 chr4 92460611 92460876 -91827786 - L1ME LINE L1 -569 5593 5293 423 343 101 47 chr4 92461059 92461575 -91827087 - LTR67 LTR ERVL -12 545 2 211 333 52 21 chr4 92462054 92462150 -91826512 - L2 LINE L2 0 3272 3174 28 48 0 0 chr4 92462202 92462244 -91826418 + AT_rich Low_complexity Low_complexity 1 42 0 227 388 50 21 chr4 92462269 92462509 -91826153 - L2 LINE L2 -632 2682 2436 523 259 108 26 chr4 92462699 92462931 -91825731 - LTR41 LTR ERVL -17 756 506 282 281 0 0 chr4 92463426 92463490 -91825172 - LTR41 LTR ERVL -597 176 113 2452 78 0 0 chr4 92463506 92463815 -91824847 + AluSc SINE Alu 1 309 0 370 284 110 18 chr4 92464191 92464409 -91824253 - ERVL LTR ERVL -261 5503 5266 22 35 0 0 chr4 92464544 92464573 -91824089 + AT_rich Low_complexity Low_complexity 1 29 0 552 344 77 20 chr4 92464676 92465133 -91823529 + ERVL LTR ERVL 3150 3632 -2132 241 396 57 23 chr4 92465181 92465446 -91823216 - L2 LINE L2 -429 2885 2612 621 249 140 31 chr4 92465527 92465784 -91822878 - MER2 DNA MER2_type -3 342 58 3713 184 14 44 chr4 92465786 92466666 -91821996 + L1 LINE L1 3055 3907 -2239 2520 174 63 11 chr4 92466668 92467144 -91821518 - L1M1 LINE L1 -7054 511 11 1252 246 24 63 chr4 92467317 92467780 -91820882 - L1ME1 LINE L1 -4 6162 5718 24 53 0 0 chr4 92467816 92467854 -91820808 + AT_rich Low_complexity Low_complexity 1 38 0 600 224 63 27 chr4 92468047 92468270 -91820392 + L1ME1 LINE L1 4885 5115 -1031 351 113 0 0 chr4 92468274 92468327 -91820335 + (CA)n Simple_repeat Simple_repeat 1 53 0 2520 257 39 26 chr4 92468342 92468684 -91819978 + L1ME1 LINE L1 5134 5470 -696 195 114 0 0 chr4 92468684 92468719 -91819943 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 2520 257 39 26 chr4 92468719 92469372 -91819290 + L1ME1 LINE L1 5470 6141 -25 21 0 0 0 chr4 92469372 92469393 -91819269 + AT_rich Low_complexity Low_complexity 1 21 0 519 358 136 33 chr4 92469393 92470181 -91818481 + L2 LINE L2 1893 2761 -553 1874 202 3 6 chr4 92470228 92470569 -91818093 - MLT1A1 LTR MaLR -25 340 1 306 347 51 56 chr4 92470651 92471100 -91817562 + L2 LINE L2 2833 3279 -34 21 0 0 0 chr4 92474484 92474505 -91814157 + AT_rich Low_complexity Low_complexity 1 21 0 184 352 23 11 chr4 92475381 92475469 -91813193 - L2 LINE L2 -88 3225 3137 1153 199 37 45 chr4 92475727 92475973 -91812689 - AluJo SINE Alu 0 312 69 404 203 195 17 chr4 92475973 92476091 -91812571 + MER5A DNA MER1_type 30 168 -21 21 0 0 0 chr4 92476565 92476586 -91812076 + AT_rich Low_complexity Low_complexity 1 21 0 234 423 44 0 chr4 92477626 92477808 -91810854 - MIR SINE MIR -51 211 22 212 149 21 0 chr4 92478313 92478360 -91810302 + (TA)n Simple_repeat Simple_repeat 2 49 0 405 0 0 0 chr4 92478361 92478406 -91810256 + (TAGA)n Simple_repeat Simple_repeat 3 47 0 243 321 122 41 chr4 92478458 92478679 -91809983 + MIR SINE MIR 23 261 -1 2201 86 4 0 chr4 92479491 92479770 -91808892 + AluSp SINE Alu 4 283 -30 362 332 10 49 chr4 92480498 92480728 -91807934 - MIR SINE MIR -41 221 7 205 261 0 45 chr4 92480955 92481043 -91807619 + GA-rich Low_complexity Low_complexity 1 84 0 600 364 16 10 chr4 92481525 92481833 -91806829 + MLT1K LTR MaLR 208 517 -71 287 291 83 39 chr4 92482707 92482937 -91805725 - L1MEc LINE L1 -4652 1744 1505 3788 194 61 30 chr4 92483089 92483980 -91804682 - MER49 LTR ERV1 -1 922 5 204 172 69 0 chr4 92484077 92484135 -91804527 + (TTATA)n Simple_repeat Simple_repeat 5 66 0 301 261 0 0 chr4 92484150 92484215 -91804447 - Tigger5 DNA MER2_type 0 2323 2259 1517 150 88 86 chr4 92484295 92484669 -91803993 - MSTA LTR MaLR 0 409 1 256 267 238 18 chr4 92484808 92485085 -91803577 - HAL1b LINE L1 -678 670 333 302 248 83 16 chr4 92485097 92485218 -91803444 - HAL1b LINE L1 -162 1186 1058 205 186 62 31 chr4 92485226 92485355 -91803307 + A-rich Low_complexity Low_complexity 1 133 0 508 275 69 87 chr4 92485563 92485999 -91802663 - MLT1H LTR MaLR -3 546 119 21 0 0 0 chr4 92486671 92486692 -91801970 + AT_rich Low_complexity Low_complexity 1 21 0 192 332 80 57 chr4 92488258 92488607 -91800055 + L2 LINE L2 2349 2705 -609 201 276 35 0 chr4 92488733 92488791 -91799871 - MIR SINE MIR -148 114 55 207 212 35 0 chr4 92489585 92489670 -91798992 + (TA)n Simple_repeat Simple_repeat 1 88 0 511 252 97 31 chr4 92490015 92490202 -91798460 + LTR37B LTR ERV1 194 404 -64 1787 256 52 39 chr4 92490202 92490820 -91797842 + MLT1E2 LTR MaLR 1 626 0 511 252 97 31 chr4 92490820 92490890 -91797772 + LTR37B LTR ERV1 404 468 0 252 0 0 0 chr4 92491797 92491825 -91796837 + (CA)n Simple_repeat Simple_repeat 2 29 0 2418 68 0 3 chr4 92492088 92492399 -91796263 + AluY SINE Alu 1 310 -1 223 181 28 0 chr4 92493062 92493134 -91795528 + GA-rich Low_complexity Low_complexity 1 74 0 303 329 62 7 chr4 92494288 92494434 -91794228 - MIR SINE MIR -57 205 52 2013 138 14 0 chr4 92495899 92496195 -91792467 + AluSq SINE Alu 1 300 -13 668 175 48 8 chr4 92498303 92498429 -91790233 + AluJb SINE Alu 6 136 -176 1249 100 0 0 chr4 92498522 92498706 -91789956 + AluSg/x SINE Alu 123 306 0 2108 120 50 31 chr4 92499171 92499528 -91789134 + THE1B LTR MaLR 1 364 0 10647 114 17 2 chr4 92499528 92501084 -91787578 + THE1B-int LTR MaLR 1 1580 0 1996 135 53 31 chr4 92501084 92501440 -91787222 + THE1B LTR MaLR 1 364 0 198 227 0 23 chr4 92501475 92501519 -91787143 + MIR SINE MIR 116 158 -104 270 81 0 0 chr4 92501807 92501844 -91786818 + (TA)n Simple_repeat Simple_repeat 1 37 0 263 294 65 41 chr4 92502068 92502238 -91786424 - MIR SINE MIR -15 247 74 37 69 0 0 chr4 92502664 92502736 -91785926 + AT_rich Low_complexity Low_complexity 1 72 0 187 280 161 0 chr4 92502964 92503057 -91785605 - MIR SINE MIR -54 208 101 31 44 0 0 chr4 92503309 92503354 -91785308 + AT_rich Low_complexity Low_complexity 1 45 0 231 195 0 0 chr4 92504443 92504484 -91784178 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 24 0 0 0 chr4 92505544 92505568 -91783094 + AT_rich Low_complexity Low_complexity 1 24 0 300 287 28 9 chr4 92505722 92505830 -91782832 - L1ME LINE L1 -391 5730 5621 254 218 218 68 chr4 92505840 92505973 -91782689 - MIR SINE MIR -31 231 79 1038 253 49 52 chr4 92507757 92508204 -91780458 + LTR16A1 LTR ERVL 12 457 0 23 54 0 0 chr4 92510397 92510434 -91778228 + AT_rich Low_complexity Low_complexity 1 37 0 336 299 134 22 chr4 92510630 92510764 -91777898 + MIR SINE MIR 81 229 -33 186 362 38 19 chr4 92510858 92510963 -91777699 + MIR SINE MIR 28 134 -128 1957 104 17 20 chr4 92511017 92511314 -91777348 + AluSx SINE Alu 1 296 -16 1401 211 3 16 chr4 92511385 92511707 -91776955 - AluJb SINE Alu 0 312 4 22 35 0 0 chr4 92511800 92511829 -91776833 + AT_rich Low_complexity Low_complexity 1 29 0 235 345 63 21 chr4 92512973 92513115 -91775547 - MLT1K LTR MaLR -218 370 223 703 261 79 30 chr4 92513613 92514007 -91774655 - L1MC5 LINE L1 -428 7533 7121 438 231 8 8 chr4 92514093 92514210 -91774452 - L1MC5 LINE L1 -851 7110 6994 573 254 121 59 chr4 92514211 92514518 -91774144 + MLT2C1 LTR ERVL 1 326 -71 24 0 0 0 chr4 92514563 92514587 -91774075 + AT_rich Low_complexity Low_complexity 1 24 0 339 222 47 18 chr4 92514612 92514783 -91773879 + (TTATA)n Simple_repeat Simple_repeat 5 180 0 21 0 0 0 chr4 92514808 92514829 -91773833 + AT_rich Low_complexity Low_complexity 1 21 0 997 335 43 14 chr4 92514913 92515424 -91773238 + ERVL LTR ERVL 34 574 -5101 1928 122 0 0 chr4 92515426 92515688 -91772974 + AluSg SINE Alu 4 265 -45 1682 88 8 29 chr4 92515688 92515927 -91772735 - THE1A LTR MaLR -121 234 1 14666 241 44 22 chr4 92515932 92518523 -91770139 + ERVL LTR ERVL 826 3525 -2239 393 39 0 0 chr4 92518523 92518574 -91770088 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 14666 241 44 22 chr4 92518574 92519734 -91768928 + ERVL LTR ERVL 3525 4658 -1106 27 29 0 0 chr4 92520074 92520108 -91768554 + AT_rich Low_complexity Low_complexity 1 34 0 21 57 0 0 chr4 92520230 92520265 -91768397 + AT_rich Low_complexity Low_complexity 1 35 0 2358 87 0 3 chr4 92520352 92520662 -91768000 + AluY SINE Alu 1 309 -2 4571 255 14 16 chr4 92521139 92522706 -91765956 + L1PA11 LINE L1 1749 3313 -3536 6427 162 81 30 chr4 92522725 92524262 -91764400 + L1PA11 LINE L1 4389 6104 -773 1827 140 0 14 chr4 92524262 92524540 -91764122 + AluSg SINE Alu 37 310 0 6427 162 81 30 chr4 92524540 92525355 -91763307 + L1PA11 LINE L1 6104 6876 -1 229 372 23 8 chr4 92525358 92525487 -91763175 - L1MEd LINE L1 -5701 418 288 221 0 0 33 chr4 92525717 92525747 -91762915 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1392 121 9 0 chr4 92525747 92525962 -91762700 - L1PB1 LINE L1 -6 6145 5929 25 0 0 0 chr4 92526341 92526366 -91762296 + AT_rich Low_complexity Low_complexity 1 25 0 4812 156 27 90 chr4 92526378 92527420 -91761242 - L1MA4 LINE L1 -49 6251 5230 549 155 10 0 chr4 92527418 92527515 -91761147 + L1 LINE L1 4141 4238 -1908 * 17755 31 4 0 chr4 92527511 92530443 -91758219 + L1PA3 LINE L1 3223 6167 0 4337 179 64 7 chr4 92530447 92531374 -91757288 + L1 LINE L1 4235 5214 -932 245 406 24 6 chr4 92531386 92531551 -91757111 + L1MC1 LINE L1 157 324 -5746 3779 154 9 2 chr4 92531575 92532205 -91756457 + L1PA15 LINE L1 5531 6165 0 254 188 0 16 chr4 92532257 92532321 -91756341 + L1 LINE L1 4478 4540 -1606 2357 213 19 13 chr4 92532386 92532855 -91755807 - MER70A LTR ERVL 0 472 1 348 309 71 5 chr4 92532875 92533085 -91755577 + L1MC1 LINE L1 3348 3571 -2509 21 0 0 0 chr4 92534321 92534342 -91754320 + AT_rich Low_complexity Low_complexity 1 21 0 460 308 62 0 chr4 92534702 92534832 -91753830 + MLT1J2 LTR MaLR 26 163 -287 2923 152 42 24 chr4 92534833 92535374 -91753288 + MER34C LTR ERV1 35 585 0 805 209 99 21 chr4 92535803 92535994 -91752668 + LTR40a LTR ERVL 314 519 0 267 255 53 43 chr4 92536253 92536347 -91752315 - MIR SINE MIR -28 234 140 252 0 0 0 chr4 92536638 92536666 -91751996 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 3413 217 15 13 chr4 92538219 92539099 -91749563 + L1MC1 LINE L1 4751 5633 -634 3984 167 68 3 chr4 92539099 92539834 -91748828 - LTR39 LTR ERV1 0 783 1 3413 217 15 13 chr4 92539834 92540074 -91748588 + L1MC1 LINE L1 5633 5871 -396 226 270 108 36 chr4 92540435 92540546 -91748116 + MLT1L LTR MaLR 149 267 -348 541 59 0 0 chr4 92540707 92540775 -91747887 - 7SK RNA RNA 0 193 126 718 158 0 16 chr4 92540818 92540945 -91747717 - 7SK RNA RNA -68 125 1 195 69 0 0 chr4 92541261 92541290 -91747372 + (A)n Simple_repeat Simple_repeat 1 29 0 198 0 0 0 chr4 92541722 92541744 -91746918 + (T)n Simple_repeat Simple_repeat 1 22 0 1133 272 104 43 chr4 92542053 92542542 -91746120 - MLT1E LTR MaLR 0 593 75 21 0 0 0 chr4 92542767 92542788 -91745874 + AT_rich Low_complexity Low_complexity 1 21 0 460 219 61 55 chr4 92543080 92543244 -91745418 - LTR43 LTR ERV1 -259 343 179 271 329 93 29 chr4 92543489 92543629 -91745033 + L2 LINE L2 2883 3031 -282 27 29 0 0 chr4 92543689 92543723 -91744939 + AT_rich Low_complexity Low_complexity 1 34 0 230 222 278 19 chr4 92545066 92545174 -91743488 - L2 LINE L2 -20 3293 3158 965 110 19 0 chr4 92545376 92545531 -91743131 - L1MA5 LINE L1 -2 6298 6141 334 283 72 7 chr4 92547368 92547520 -91741142 - L1ME LINE L1 -351 5770 5609 3143 158 30 2 chr4 92548373 92548912 -91739750 + MER41C LTR ERV1 1 554 0 30 45 0 0 chr4 92550497 92550541 -91738121 + AT_rich Low_complexity Low_complexity 1 44 0 24 32 0 0 chr4 92550918 92550949 -91737713 + AT_rich Low_complexity Low_complexity 1 31 0 238 193 35 0 chr4 92550959 92551016 -91737646 + L1M4 LINE L1 5183 5241 -905 33 43 0 0 chr4 92551192 92551239 -91737423 + AT_rich Low_complexity Low_complexity 1 47 0 239 225 0 42 chr4 92551846 92551917 -91736745 - MLT1L LTR MaLR -342 273 206 295 282 0 13 chr4 92551997 92552075 -91736587 - MLT1J LTR MaLR -433 78 2 2898 76 20 10 chr4 92552535 92552931 -91735731 + MLT2A1 LTR ERVL 1 400 -44 629 330 76 13 chr4 92553329 92553632 -91735030 - MLT1I LTR MaLR -1 408 87 3641 202 61 14 chr4 92554230 92555431 -91733231 + L1MB7 LINE L1 4864 6129 -55 2686 3 0 3 chr4 92555431 92555727 -91732935 + AluYb8 SINE Alu 24 318 0 3641 202 61 14 chr4 92555727 92555776 -91732886 + L1MB7 LINE L1 6129 6174 -10 418 234 112 73 chr4 92555886 92556041 -91732621 + L1MB7 LINE L1 5962 6128 -56 1812 145 0 3 chr4 92556041 92556337 -91732325 + AluYb8 SINE Alu 24 318 0 418 234 112 73 chr4 92556337 92556386 -91732276 + L1MB7 LINE L1 6128 6174 -10 183 42 0 0 chr4 92556415 92556439 -91732223 + (TA)n Simple_repeat Simple_repeat 1 24 0 28 61 0 0 chr4 92557561 92557610 -91731052 + AT_rich Low_complexity Low_complexity 1 49 0 28 29 0 0 chr4 92559190 92559225 -91729437 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr4 92559393 92559428 -91729234 + AT_rich Low_complexity Low_complexity 1 35 0 724 200 0 0 chr4 92559429 92559549 -91729113 - FLAM_C SINE Alu -12 121 2 3855 141 32 6 chr4 92559561 92560254 -91728408 - L1PB4 LINE L1 0 6872 6162 3414 211 19 8 chr4 92560264 92561010 -91727652 - L1PB4 LINE L1 -1830 5032 4279 469 207 67 7 chr4 92561006 92561141 -91727521 - L1PB4 LINE L1 -3682 3180 3038 * 427 210 30 0 chr4 92561127 92561227 -91727435 - L1PB4 LINE L1 -3710 3152 3050 * 4181 261 42 30 chr4 92561210 92563228 -91725434 - L1PB4 LINE L1 -3697 3165 1256 505 300 53 60 chr4 92563199 92563629 -91725033 - L1PB4 LINE L1 -5461 1402 976 * 22 0 0 0 chr4 92564293 92564315 -91724347 + AT_rich Low_complexity Low_complexity 1 22 0 357 314 49 54 chr4 92564686 92564890 -91723772 + L3 LINE CR1 511 713 -864 294 362 76 34 chr4 92565092 92565501 -91723161 + L2 LINE L2 2813 3238 -75 1318 239 79 52 chr4 92565751 92566232 -91722430 + MLT1D LTR MaLR 12 505 0 337 169 0 0 chr4 92566255 92566314 -91722348 + MLT1E2 LTR MaLR 568 626 0 324 186 0 0 chr4 92566337 92566396 -91722266 + MLT1D LTR MaLR 447 505 0 324 194 11 7 chr4 92566396 92566478 -91722184 + MLT1D LTR MaLR 451 505 0 324 186 0 0 chr4 92566501 92566560 -91722102 + MLT1D LTR MaLR 447 505 0 515 353 60 15 chr4 92566574 92566840 -91721822 + L3 LINE CR1 727 1004 -573 896 273 155 3 chr4 92567323 92567678 -91720984 + MLT1I LTR MaLR 1 409 0 1872 111 0 4 chr4 92569227 92569488 -91719174 + AluSg SINE Alu 43 302 -8 6404 144 59 9 chr4 92569729 92570902 -91717760 - Tigger3b DNA MER2_type 0 1231 1 8630 56 2 1 chr4 92573056 92574126 -91714536 - MER11C LTR ERVK 0 1071 1 1889 153 3 45 chr4 92574490 92574842 -91713820 - MER1B DNA MER1_type 0 337 1 459 275 31 88 chr4 92575330 92575523 -91713139 - L2 LINE L2 0 3272 3091 3555 128 63 55 chr4 92575672 92576358 -91712304 - LTR8 LTR ERV1 0 691 1 2642 35 0 6 chr4 92576456 92576769 -91711893 + AluY SINE Alu 1 311 0 2159 133 0 3 chr4 92576904 92577213 -91711449 + AluSg SINE Alu 1 308 -2 25 65 0 0 chr4 92577664 92577710 -91710952 + AT_rich Low_complexity Low_complexity 1 46 0 503 212 252 0 chr4 92578498 92578649 -91710013 + MER5A DNA MER1_type 1 189 0 213 321 45 22 chr4 92578735 92578869 -91709793 + L2 LINE L2 3170 3306 -7 403 260 6 94 chr4 92579696 92579823 -91708839 - MER115 DNA AcHobo 0 693 585 2199 103 0 3 chr4 92579823 92580115 -91708547 - AluSc SINE Alu -18 291 1 403 260 6 94 chr4 92580115 92580168 -91708494 - MER115 DNA AcHobo -108 585 529 500 354 24 14 chr4 92580355 92580564 -91708098 - MER115 DNA AcHobo -449 244 34 1007 306 89 39 chr4 92582615 92582849 -91705813 - MLT2F LTR ERVL -11 652 431 2589 137 26 0 chr4 92582849 92583264 -91705398 + MSTA LTR MaLR 1 426 -2 1007 306 89 39 chr4 92583264 92583601 -91705061 - MLT2F LTR ERVL -232 431 52 1480 252 37 35 chr4 92784220 92784676 -91503986 + LTR16A1 LTR ERVL 1 457 0 569 201 121 11 chr4 92784941 92785115 -91503547 + L1MD3 LINE L1 5285 5477 -2331 805 290 51 44 chr4 92785701 92785994 -91502668 + MLT1I LTR MaLR 99 393 -16 2204 122 0 3 chr4 92786123 92786427 -91502235 + AluSx SINE Alu 1 303 -9 282 250 29 0 chr4 92786579 92786647 -91502015 + L1MD3 LINE L1 6446 6515 -1480 512 68 0 27 chr4 92786649 92786723 -91501939 + L1P LINE L1 4852 4923 -1223 1035 195 15 24 chr4 92787018 92787223 -91501439 - MLT1B LTR MaLR -187 203 1 1128 303 145 45 chr4 92787229 92787863 -91500799 - L2 LINE L2 -954 2360 1790 2489 78 0 19 chr4 92787863 92788182 -91500480 + AluSq SINE Alu 1 313 0 1128 303 145 45 chr4 92788182 92788632 -91500030 - L2 LINE L2 -1524 1790 1168 1092 254 61 57 chr4 92788644 92789069 -91499593 - MLT1J2 LTR MaLR -22 428 2 493 271 25 0 chr4 92789089 92789207 -91499455 - MIR SINE MIR -132 130 10 1787 151 54 0 chr4 92789308 92789587 -91499075 + AluJo SINE Alu 1 294 -18 1009 188 38 28 chr4 92789600 92789813 -91498849 + MLT1A1 LTR MaLR 99 313 -52 592 258 53 47 chr4 92789831 92790021 -91498641 + MIR SINE MIR 2 192 -70 456 19 0 0 chr4 92790520 92790573 -91498089 + (TCCA)n Simple_repeat Simple_repeat 4 56 0 23 33 0 0 chr4 92790652 92790682 -91497980 + AT_rich Low_complexity Low_complexity 1 30 0 234 0 0 0 chr4 92790934 92790960 -91497702 + (T)n Simple_repeat Simple_repeat 1 26 0 327 301 44 22 chr4 92791241 92791377 -91497285 + MIR SINE MIR 3 141 -121 * 354 184 204 31 chr4 92791376 92791474 -91497188 - L2 LINE L2 -5 3308 3194 284 216 162 0 chr4 92792097 92792171 -91496491 + MIR SINE MIR 116 201 -61 187 407 25 0 chr4 92792230 92792311 -91496351 - L2 LINE L2 -196 3076 2994 277 296 58 85 chr4 92792422 92792910 -91495752 - L2 LINE L2 -25 3247 2764 1673 260 82 10 chr4 92793278 92793802 -91494860 - MLT1F1 LTR MaLR 0 567 5 469 258 50 50 chr4 92793819 92794001 -91494661 - Charlie8 DNA MER1_type -2235 182 1 254 252 171 18 chr4 92794722 92794833 -91493829 - L2 LINE L2 -5 3308 3181 3301 175 54 9 chr4 92795304 92795950 -91492712 + L1MB8 LINE L1 5501 6175 -3 439 234 48 24 chr4 92797022 92797146 -91491516 - MIR SINE MIR -34 228 102 1673 153 7 68 chr4 92797261 92797568 -91491094 - AluJb SINE Alu -24 288 1 2029 130 3 7 chr4 92797693 92797993 -91490669 + AluSx SINE Alu 1 299 -13 795 282 59 65 chr4 92798404 92799090 -91489572 - L1ME3A LINE L1 -218 5952 5269 791 201 7 0 chr4 92800068 92800207 -91488455 + FLAM_C SINE Alu 2 141 -2 2298 92 0 13 chr4 92800466 92800769 -91487893 + AluY SINE Alu 1 299 -12 210 71 0 0 chr4 92800901 92800929 -91487733 + (ATG)n Simple_repeat Simple_repeat 3 30 0 281 238 59 30 chr4 92801092 92801193 -91487469 + L1ME4a LINE L1 6017 6120 -1 956 264 85 92 chr4 92801282 92801727 -91486935 + L1ME4a LINE L1 5295 5733 -388 1802 179 0 10 chr4 92801727 92802040 -91486622 + AluJb SINE Alu 3 312 0 956 264 85 92 chr4 92802040 92802427 -91486235 + L1ME4a LINE L1 5733 6121 0 233 311 119 13 chr4 92802530 92802681 -91485981 + MIR SINE MIR 26 192 -70 1109 256 67 31 chr4 92802696 92803114 -91485548 - Zaphod DNA AcHobo -2 4029 3597 461 157 69 74 chr4 92803116 92803332 -91485330 - Zaphod DNA AcHobo -3043 988 774 5366 113 41 0 chr4 92803332 92804113 -91484549 - L1PA16 LINE L1 -15 6151 5339 451 194 48 86 chr4 92804113 92804229 -91484433 - Zaphod DNA AcHobo -3214 817 709 2299 99 3 0 chr4 92804229 92804523 -91484139 + AluSx SINE Alu 2 296 -16 451 194 48 86 chr4 92804523 92804592 -91484070 - Zaphod DNA AcHobo -3322 709 639 837 239 56 7 chr4 92804602 92804941 -91483721 - Charlie1 DNA MER1_type -6 2755 3 * 1298 219 25 0 chr4 92804941 92805205 -91483457 - Zaphod DNA AcHobo -3417 614 344 21 0 0 0 chr4 92807440 92807461 -91481201 + AT_rich Low_complexity Low_complexity 1 21 0 1218 199 79 38 chr4 92808144 92808435 -91480227 + AluJo SINE Alu 1 303 -9 22 0 0 0 chr4 92809012 92809034 -91479628 + AT_rich Low_complexity Low_complexity 1 22 0 3345 143 83 24 chr4 92809360 92809659 -91479003 + MER50 LTR ERV1 1 281 -453 2506 99 39 14 chr4 92809659 92810023 -91478639 - THE1C LTR MaLR 0 375 3 3345 143 83 24 chr4 92810023 92810359 -91478303 + MER50 LTR ERV1 281 674 -60 513 283 7 29 chr4 92810785 92810923 -91477739 + MIR3 SINE MIR 24 158 -50 417 86 0 0 chr4 92811003 92811061 -91477601 + (TTC)n Simple_repeat Simple_repeat 3 60 0 1485 153 66 24 chr4 92811063 92811228 -91477434 - AluJo SINE Alu -13 299 115 207 0 0 0 chr4 92811228 92811251 -91477411 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1485 153 66 24 chr4 92811251 92811372 -91477290 - AluJo SINE Alu -197 115 1 340 230 50 10 chr4 92811886 92811986 -91476676 - MER104 DNA Tc2 -62 118 15 1620 177 3 26 chr4 92812731 92813036 -91475626 - AluJo SINE Alu -14 298 1 431 253 99 39 chr4 92813174 92813356 -91475306 - MLT1L LTR MaLR -290 325 133 200 328 0 0 chr4 92813689 92813753 -91474909 + L2 LINE L2 2694 2757 -557 260 241 147 52 chr4 92813834 92813950 -91474712 + L2 LINE L2 2933 3059 -213 443 322 72 14 chr4 92814000 92814208 -91474454 + L2 LINE L2 2611 2830 -484 215 282 0 51 chr4 92814260 92814338 -91474324 + L2 LINE L2 2914 2987 -285 2163 219 47 90 chr4 92814655 92815377 -91473285 - LTR8 LTR ERV1 0 691 1 438 292 67 0 chr4 92816189 92816309 -91472353 - MER94 DNA DNA 0 134 7 322 179 64 0 chr4 92818367 92818445 -91470217 - L1ME2 LINE L1 0 6164 6082 22 70 0 0 chr4 92818463 92818506 -91470156 + AT_rich Low_complexity Low_complexity 1 43 0 510 197 7 44 chr4 92818556 92818693 -91469969 + L1MEd LINE L1 965 1096 -5023 4075 162 24 86 chr4 92818696 92819686 -91468976 + L1MB7 LINE L1 5256 6184 0 230 236 28 14 chr4 92819811 92819883 -91468779 + L1M4 LINE L1 5131 5203 -943 * 12926 41 8 0 chr4 92819879 92821467 -91467195 - L1P LINE L1 -796 5350 3750 2402 183 55 30 chr4 92822260 92822753 -91465909 + MLT1D LTR MaLR 1 505 0 21 0 0 0 chr4 92823664 92823685 -91464977 + AT_rich Low_complexity Low_complexity 1 21 0 2243 109 0 3 chr4 92823695 92823997 -91464665 + AluSq SINE Alu 1 301 -12 544 186 12 106 chr4 92824034 92824195 -91464467 + MER69B DNA AcHobo 2 147 -1079 599 228 111 25 chr4 92824210 92824372 -91464290 - AluSg/x SINE Alu 0 309 134 4086 215 94 10 chr4 92824372 92825382 -91463280 + MER69B DNA AcHobo 131 1225 -1 1463 191 7 24 chr4 92825477 92825771 -91462891 - AluJo SINE Alu -15 297 9 1488 156 47 40 chr4 92825944 92826355 -91462307 - MLT1C LTR MaLR 0 467 1 389 304 0 24 chr4 92826503 92826628 -91462034 + L2 LINE L2 3192 3313 0 242 273 71 60 chr4 92827074 92827257 -91461405 + L2 LINE L2 3117 3301 -12 198 118 0 0 chr4 92827276 92827310 -91461352 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 24 0 0 0 chr4 92827912 92827936 -91460726 + AT_rich Low_complexity Low_complexity 1 24 0 1745 155 9 32 chr4 92828135 92828451 -91460211 + AluJo SINE Alu 1 309 -3 232 294 70 28 chr4 92828843 92828986 -91459676 - L1P LINE L1 -1097 5049 4901 2001 264 87 63 chr4 92829421 92830259 -91458403 + L2 LINE L2 1996 2911 -402 2469 86 0 6 chr4 92830259 92830572 -91458090 - AluSp SINE Alu 0 313 3 2001 264 87 63 chr4 92830572 92830978 -91457684 + L2 LINE L2 2911 3306 -7 386 342 86 61 chr4 92830998 92831233 -91457429 - L1 LINE L1 -1577 4569 4341 231 114 0 0 chr4 92831233 92831268 -91457394 + (TA)n Simple_repeat Simple_repeat 1 35 0 386 342 86 61 chr4 92831268 92831839 -91456823 - L1 LINE L1 -1805 4341 3743 1836 155 24 3 chr4 92831858 92832148 -91456514 - AluJb SINE Alu -16 296 1 580 249 80 84 chr4 92832487 92832724 -91455938 - MIR SINE MIR -7 255 20 2419 38 55 0 chr4 92833587 92833755 -91454907 - AluY SINE Alu -2 309 117 185 0 40 0 chr4 92833755 92833780 -91454882 + (TA)n Simple_repeat Simple_repeat 2 27 0 2419 38 55 0 chr4 92833780 92833904 -91454758 - AluY SINE Alu -194 117 1 263 298 172 20 chr4 92833957 92834108 -91454554 + MER5B DNA MER1_type 1 174 -4 2096 104 7 3 chr4 92835696 92835984 -91452678 + AluSx SINE Alu 4 292 -20 225 163 41 0 chr4 92836049 92836098 -91452564 + (TA)n Simple_repeat Simple_repeat 2 52 0 685 285 25 30 chr4 92836914 92837149 -91451513 - MIR SINE MIR -18 244 11 360 248 68 139 chr4 92837287 92837584 -91451078 - MLT1E LTR MaLR -277 290 1 199 229 0 0 chr4 92837585 92837633 -91451029 + L2 LINE L2 2658 2705 -609 1626 193 7 0 chr4 92837693 92837968 -91450694 + AluJo SINE Alu 6 282 -30 52 14 0 14 chr4 92837968 92838000 -91450662 + AT_rich Low_complexity Low_complexity 1 32 -37 1629 180 11 0 chr4 92838000 92838283 -91450379 - AluJo SINE Alu -26 286 1 52 14 0 14 chr4 92838283 92838320 -91450342 + AT_rich Low_complexity Low_complexity 32 69 0 908 255 122 21 chr4 92838322 92838863 -91449799 + L2 LINE L2 2702 3296 -17 21 0 0 0 chr4 92838928 92838949 -91449713 + AT_rich Low_complexity Low_complexity 1 21 0 350 312 32 0 chr4 92839917 92840042 -91448620 + MIR SINE MIR 105 233 -29 801 178 0 8 chr4 92840344 92840473 -91448189 + FLAM_A SINE Alu 1 128 -5 525 238 136 22 chr4 92840595 92841130 -91447532 - L1MC4a LINE L1 -1868 5940 5313 378 338 19 19 chr4 92841224 92841384 -91447278 + MIR SINE MIR 83 242 -20 191 289 0 0 chr4 92841937 92841989 -91446673 + L2 LINE L2 3242 3293 -20 295 177 38 25 chr4 92843904 92843983 -91444679 - L1P LINE L1 -900 5246 5167 284 153 51 0 chr4 92844031 92844090 -91444572 - MLT1F-int LTR MaLR -1308 63 2 1780 247 77 10 chr4 92844093 92844587 -91444075 - MLT1F LTR MaLR -2 540 14 389 276 84 50 chr4 92844643 92844830 -91443832 + L1ME4a LINE L1 5871 6069 -52 333 0 0 0 chr4 92844830 92844867 -91443795 + (TG)n Simple_repeat Simple_repeat 2 38 0 389 276 84 50 chr4 92844867 92844918 -91443744 + L1ME4a LINE L1 6069 6117 -4 1409 269 38 59 chr4 92846051 92846509 -91442153 - L1MEc LINE L1 -4447 1949 1512 2070 118 7 26 chr4 92846509 92846814 -91441848 - AluSx SINE Alu -13 299 1 1409 269 38 59 chr4 92846814 92847113 -91441549 - L1MEc LINE L1 -4884 1512 1208 258 319 74 0 chr4 92847185 92847320 -91441342 + MIR SINE MIR 117 261 -1 278 105 0 0 chr4 92847321 92847359 -91441303 - MLT1H LTR MaLR 0 549 512 3116 240 28 31 chr4 92847614 92847987 -91440675 - L1MA8 LINE L1 0 6291 5919 7634 119 43 24 chr4 92847987 92849139 -91439523 - HSMAR2 DNA Mariner -3 1299 119 1953 124 11 0 chr4 92849139 92849422 -91439240 - AluSg SINE Alu -5 305 20 7634 119 43 24 chr4 92849422 92849544 -91439118 - HSMAR2 DNA Mariner -1183 119 1 3116 240 28 31 chr4 92849544 92849911 -91438751 - L1MA8 LINE L1 -372 5919 5553 198 0 0 0 chr4 92850509 92850531 -91438131 + (A)n Simple_repeat Simple_repeat 1 22 0 743 164 0 0 chr4 92850715 92850831 -91437831 - AluJb SINE Alu -196 116 1 2122 145 0 10 chr4 92851270 92851580 -91437082 - AluSx SINE Alu -5 307 1 277 309 10 0 chr4 92851580 92851677 -91436985 - MIR3 SINE MIR -8 200 103 1197 182 57 71 chr4 92852078 92852358 -91436304 - AluJo SINE Alu -36 276 1 563 267 163 32 chr4 92852897 92853329 -91435333 + MLT1J LTR MaLR 2 426 -20 1094 241 49 63 chr4 92854293 92854799 -91433863 + LTR33 LTR ERVL 23 521 0 205 73 24 24 chr4 92855061 92855102 -91433560 + (TC)n Simple_repeat Simple_repeat 1 41 0 180 111 0 0 chr4 92855102 92855129 -91433533 + (TG)n Simple_repeat Simple_repeat 2 28 0 2858 254 82 46 chr4 92855142 92855492 -91433170 - L1MC4 LINE L1 -124 7918 7582 785 123 43 0 chr4 92855492 92855630 -91433032 - L1MC1 LINE L1 0 6333 6190 2858 254 82 46 chr4 92855630 92856740 -91431922 - L1MC4 LINE L1 -460 7582 6405 2339 137 16 58 chr4 92856757 92857189 -91431473 - MLT2D LTR ERVL 0 414 1 303 71 0 0 chr4 92858067 92858109 -91430553 + (CA)n Simple_repeat Simple_repeat 2 43 0 301 350 115 0 chr4 92858617 92858860 -91429802 + L2 LINE L2 2825 3095 -177 226 190 86 0 chr4 92859379 92859437 -91429225 + L2 LINE L2 3210 3272 0 25 0 0 0 chr4 92859581 92859606 -91429056 + AT_rich Low_complexity Low_complexity 1 25 0 473 214 34 0 chr4 92859850 92859967 -91428695 + L1ME LINE L1 5435 5555 -611 1113 212 150 23 chr4 92859988 92860374 -91428288 + MSTB2 LTR MaLR 23 457 0 303 296 55 19 chr4 92860466 92860723 -91427939 + L1M4 LINE L1 3883 4148 -1998 1316 159 39 0 chr4 92860723 92860931 -91427731 - AluJb SINE Alu -11 301 86 21 0 0 0 chr4 92860942 92860963 -91427699 + AT_rich Low_complexity Low_complexity 1 21 0 1103 294 43 17 chr4 92860964 92861302 -91427360 + L1M4 LINE L1 4160 4488 -1658 1511 172 80 25 chr4 92861302 92861628 -91427034 - MER2 DNA MER2_type 0 344 1 1103 294 43 17 chr4 92861628 92861945 -91426717 + L1M4 LINE L1 4488 4832 -1314 378 109 94 0 chr4 92862039 92862103 -91426559 - AluJb SINE Alu -147 155 86 290 305 8 8 chr4 92862126 92862257 -91426405 + L1M4 LINE L1 4151 4281 -1865 924 98 8 15 chr4 92862734 92862867 -91425795 + AluSq/x SINE Alu 1 132 -181 679 341 15 8 chr4 92863147 92863414 -91425248 - L3b LINE CR1 -205 1378 1110 1816 168 3 29 chr4 92863969 92864278 -91424384 - AluJo SINE Alu -11 301 1 7634 20 0 0 chr4 92864300 92865339 -91423323 - L1PA3 LINE L1 0 6155 5113 2182 134 0 0 chr4 92865954 92866261 -91422401 + AluSx SINE Alu 3 309 -3 921 175 30 86 chr4 92867243 92867512 -91421150 + MER112 DNA MER1_type 2 255 -1 859 255 153 20 chr4 92867782 92868174 -91420488 - MLT1L LTR MaLR -9 606 163 913 235 8 47 chr4 92868218 92868473 -91420189 + L2 LINE L2 2438 2682 -632 322 302 63 11 chr4 92868484 92868673 -91419989 - MLT1K LTR MaLR -135 453 255 248 320 33 47 chr4 92868712 92868862 -91419800 + MIR SINE MIR 113 260 -2 486 326 33 11 chr4 92869033 92869214 -91419448 + MIR SINE MIR 14 198 -64 187 310 35 17 chr4 92869256 92869314 -91419348 + L2 LINE L2 3196 3254 -18 2036 141 118 18 chr4 92869807 92870196 -91418466 + MSTA LTR MaLR 1 428 0 1759 145 52 24 chr4 92870830 92871119 -91417543 + AluJb SINE Alu 1 297 -15 320 254 14 0 chr4 92871267 92871338 -91417324 - MIR SINE MIR -112 150 79 383 359 78 22 chr4 92871780 92871924 -91416738 + MIR SINE MIR 13 176 -86 2184 119 10 0 chr4 92871924 92872218 -91416444 - AluSx SINE Alu -15 297 1 383 359 78 22 chr4 92872218 92872304 -91416358 + MIR SINE MIR 176 256 -6 12048 157 52 19 chr4 92873565 92875390 -91413272 + L1M4c LINE L1 27 1972 -4410 2174 102 7 3 chr4 92875390 92875685 -91412977 + AluSp SINE Alu 1 296 -17 12048 157 52 19 chr4 92875685 92876498 -91412164 + L1M4c LINE L1 1972 2757 -3625 509 303 28 39 chr4 92876499 92876677 -91411985 - MIR SINE MIR -86 176 1 2786 157 34 19 chr4 92877292 92877815 -91410847 + MLT2B3 LTR ERVL 4 534 -20 313 175 0 0 chr4 92877834 92877891 -91410771 + MLT2C2 LTR ERVL 408 464 0 446 276 66 0 chr4 92877937 92878073 -91410589 + LTR33 LTR ERVL 25 159 -362 2162 110 26 45 chr4 92878464 92878567 -91410095 + THE1C LTR MaLR 1 104 -271 2015 135 19 53 chr4 92878567 92878944 -91409718 - THE1B LTR MaLR 0 364 1 11479 99 8 7 chr4 92878944 92880523 -91408139 - THE1B-int LTR MaLR 0 1580 1 1870 151 24 40 chr4 92880523 92880893 -91407769 - THE1B LTR MaLR 0 364 1 2162 110 26 45 chr4 92880893 92881169 -91407493 + THE1C LTR MaLR 101 375 0 3959 121 55 9 chr4 92881179 92881871 -91406791 - L1MB3 LINE L1 0 6183 5460 342 293 228 13 chr4 92881883 92882367 -91406295 - L2 LINE L2 -9 3304 2712 774 322 9 4 chr4 92882493 92882720 -91405942 + MIR SINE MIR 9 236 -26 633 319 82 67 chr4 92882847 92883668 -91404994 - L2 LINE L2 0 3272 2422 535 273 82 14 chr4 92883717 92883937 -91404725 + LTR16A LTR ERVL 36 270 -180 466 317 28 22 chr4 92884011 92884191 -91404471 - L2 LINE L2 -926 2388 2208 920 219 26 91 chr4 92884191 92884533 -91404129 + MER46C DNA MER2_type 4 323 -15 384 344 78 30 chr4 92884551 92884923 -91403739 - L2 LINE L2 -1112 2202 1813 2329 112 9 0 chr4 92885236 92885584 -91403078 - MER4D LTR ERV1 0 872 522 5578 88 21 1 chr4 92885584 92886336 -91402326 + L1PA10 LINE L1 5400 6166 -2 1634 81 129 16 chr4 92886507 92886750 -91401912 - MER4D LTR ERV1 -334 538 268 3727 71 31 10 chr4 92886750 92887240 -91401422 - LTR3b LTR ERVK 0 500 1 1988 74 22 4 chr4 92887240 92887510 -91401152 - MER4D LTR ERV1 -597 275 1 231 291 184 51 chr4 92887539 92887773 -91400889 - L2 LINE L2 -1890 1424 1160 510 320 30 47 chr4 92887941 92888238 -91400424 + LTR16C LTR ERVL 80 371 -120 657 272 110 12 chr4 92888238 92888701 -91399961 + MLT1G LTR MaLR 1 555 0 402 272 24 48 chr4 92888702 92888780 -91399882 + LTR16C LTR ERVL 368 443 -48 1884 152 14 10 chr4 92888780 92889077 -91399585 - AluJb SINE Alu -14 298 1 402 272 24 48 chr4 92889077 92889123 -91399539 + LTR16C LTR ERVL 443 489 -2 361 267 78 26 chr4 92889125 92889316 -91399346 + L1ME4a LINE L1 5919 6119 -2 398 239 126 12 chr4 92890039 92890206 -91398456 - MIR SINE MIR -46 216 31 8093 34 0 0 chr4 92890567 92891761 -91396901 + L1PA5 LINE L1 4961 6154 0 242 268 39 0 chr4 92891773 92891850 -91396812 + L1MC4 LINE L1 6503 6599 -1241 1648 167 59 83 chr4 92891954 92892326 -91396336 + MLT1A1 LTR MaLR 3 365 0 2126 94 20 24 chr4 92892406 92892704 -91395958 + AluY SINE Alu 2 298 -13 1287 123 0 0 chr4 92892704 92892883 -91395779 + AluSp SINE Alu 134 312 -1 27 29 0 0 chr4 92892915 92892949 -91395713 + AT_rich Low_complexity Low_complexity 1 34 0 457 106 0 220 chr4 92892985 92893117 -91395545 - FRAM SINE Alu 0 176 74 440 258 40 53 chr4 92893428 92893470 -91395192 - MIR SINE MIR -73 189 148 2008 110 40 27 chr4 92893470 92893769 -91394893 - AluSx SINE Alu -9 303 1 440 258 40 53 chr4 92893769 92893877 -91394785 - MIR SINE MIR -114 148 41 216 0 0 0 chr4 92894736 92894760 -91393902 + (T)n Simple_repeat Simple_repeat 1 24 0 1431 206 24 7 chr4 92895038 92895325 -91393337 + MLT1A1 LTR MaLR 74 365 0 198 0 0 0 chr4 92895854 92895876 -91392786 + (TG)n Simple_repeat Simple_repeat 1 22 0 199 299 253 32 chr4 92895964 92896063 -91392599 + L3b LINE CR1 1193 1269 -314 1616 150 61 14 chr4 92896063 92896343 -91392319 + AluSx SINE Alu 1 293 -19 199 299 253 32 chr4 92896343 92896464 -91392198 + L3b LINE CR1 1269 1462 -121 1729 139 45 7 chr4 92896705 92896993 -91391669 + AluSx SINE Alu 1 299 -13 1941 130 14 3 chr4 92897118 92897410 -91391252 - AluSc SINE Alu -14 295 1 1618 145 107 15 chr4 92897534 92897871 -91390791 - L1MA9 LINE L1 -9 7263 6896 2359 130 6 0 chr4 92897871 92898230 -91390432 + L1PA14 LINE L1 5820 6180 0 6058 190 46 55 chr4 92898438 92898755 -91389907 - L1MA9 LINE L1 -363 6909 6591 3443 39 5 0 chr4 92898755 92899141 -91389521 - L1PA7 LINE L1 -3 6151 5764 6058 190 46 55 chr4 92899141 92899391 -91389271 - L1MA9 LINE L1 -681 6591 6340 1851 214 25 30 chr4 92899391 92899789 -91388873 - MSTD LTR MaLR 0 396 1 6058 190 46 55 chr4 92899789 92900530 -91388132 - L1MA9 LINE L1 -932 6340 5594 3495 69 7 16 chr4 92900530 92900977 -91387685 + L1PA10 LINE L1 5726 6168 0 6058 190 46 55 chr4 92900977 92901301 -91387361 - L1MA9 LINE L1 -1678 5594 5269 333 0 0 0 chr4 92901301 92901338 -91387324 + (TG)n Simple_repeat Simple_repeat 1 37 0 6058 190 46 55 chr4 92901338 92901457 -91387205 - L1MA9 LINE L1 -2003 5269 5151 1473 180 3 35 chr4 92901457 92901740 -91386922 - AluJo SINE Alu -38 274 1 6058 190 46 55 chr4 92901740 92901984 -91386678 - L1MA9 LINE L1 -2121 5151 4957 1837 224 70 10 chr4 92901998 92902484 -91386178 - L1MA9 LINE L1 -6514 516 2 1471 201 52 87 chr4 92902597 92902676 -91385986 - MER39 LTR ERV1 0 707 627 1467 120 50 27 chr4 92902676 92902935 -91385727 + L1MA4A LINE L1 6039 6303 0 1471 201 52 87 chr4 92902935 92903367 -91385295 - MER39 LTR ERV1 -80 627 9 581 308 86 6 chr4 92903392 92903707 -91384955 + L1ME4a LINE L1 5537 5876 -245 256 300 210 0 chr4 92904860 92904960 -91383702 + MIR SINE MIR 29 149 -113 473 230 152 12 chr4 92905006 92905176 -91383486 - MIR SINE MIR -52 210 17 660 294 84 14 chr4 92906065 92906279 -91382383 + MIR SINE MIR 6 234 -28 637 35 94 0 chr4 92906476 92906561 -91382101 - L1PA4 LINE L1 0 6155 6063 1559 181 0 48 chr4 92907798 92908091 -91380571 + AluJo SINE Alu 1 279 -33 452 255 19 43 chr4 92908133 92908321 -91380341 - MER34 LTR ERV1 -411 131 1 456 327 88 79 chr4 92909043 92909486 -91379176 + L2 LINE L2 2826 3272 0 37326 61 3 1 chr4 92909853 92914504 -91374158 - L1P LINE L1 -1471 4675 15 270 81 0 0 chr4 92914564 92914601 -91374061 + (TG)n Simple_repeat Simple_repeat 1 37 0 21 0 0 0 chr4 92914812 92914833 -91373829 + AT_rich Low_complexity Low_complexity 1 21 0 312 259 194 0 chr4 92915475 92915583 -91373079 + L2 LINE L2 3143 3271 -1 415 354 58 49 chr4 92915674 92916002 -91372660 + L2 LINE L2 2934 3264 -8 989 90 0 64 chr4 92916373 92916402 -91372260 + L1PA16 LINE L1 6017 6046 -120 3523 73 18 2 chr4 92916402 92916838 -91371824 - MLT2A1 LTR ERVL -1 443 1 989 90 0 64 chr4 92916838 92916964 -91371698 + L1PA16 LINE L1 6046 6162 -4 447 240 41 126 chr4 92916981 92917252 -91371410 - L1ME3 LINE L1 -310 5852 5602 398 234 0 0 chr4 92917287 92917364 -91371298 + L1ME LINE L1 5480 5556 -610 7157 29 1 0 chr4 92917931 92918751 -91369911 - L1PA3 LINE L1 0 6155 5335 4497 44 3 7 chr4 92918750 92919322 -91369340 + L1P LINE L1 3248 3817 -2329 * 323 313 20 34 chr4 92920614 92920761 -91367901 + MER5A DNA MER1_type 40 184 -5 866 106 0 24 chr4 92921452 92921575 -91367087 + AluSq/x SINE Alu 1 120 -192 21 0 0 0 chr4 92922215 92922236 -91366426 + AT_rich Low_complexity Low_complexity 1 21 0 228 118 0 0 chr4 92922348 92922382 -91366280 - tRNA-Gly-GGA tRNA tRNA -21 54 21 286 217 84 12 chr4 92973884 92973967 -91314695 + MIR3 SINE MIR 101 189 -19 198 136 0 0 chr4 92974147 92974191 -91314471 + (A)n Simple_repeat Simple_repeat 1 44 0 2006 115 4 4 chr4 92974195 92974502 -91314160 + AluSc SINE Alu 1 307 0 22 0 0 0 chr4 92974599 92974621 -91314041 + AT_rich Low_complexity Low_complexity 1 22 0 420 216 157 103 chr4 92975030 92975309 -91313353 - MLT1G1 LTR MaLR 0 595 258 493 279 108 0 chr4 92975364 92975522 -91313140 - MLT1G1 LTR MaLR -416 179 5 224 254 0 0 chr4 92976641 92976696 -91311966 - MIR SINE MIR -111 151 97 290 312 80 56 chr4 92977074 92977179 -91311483 + L2 LINE L2 3145 3255 -17 1852 122 75 30 chr4 92977179 92977474 -91311188 + AluJb SINE Alu 1 308 -4 290 312 80 56 chr4 92977474 92977493 -91311169 + L2 LINE L2 3255 3272 0 1940 230 110 2 chr4 92977748 92978347 -91310315 - L1MC4 LINE L1 -141 7901 7238 1541 198 198 8 chr4 92978352 92978873 -91309789 - L1MC4 LINE L1 -963 7079 6460 330 320 33 8 chr4 92979127 92979249 -91309413 - L3 LINE CR1 -264 1313 1189 224 254 0 0 chr4 92979304 92979359 -91309303 - MIR SINE MIR -111 151 97 206 329 40 34 chr4 92979417 92979566 -91309096 - L3 LINE CR1 -409 1168 1019 272 271 116 33 chr4 92979602 92979783 -91308879 + MIR SINE MIR 65 260 -2 * 406 271 50 81 chr4 92979759 92980017 -91308645 - L3 LINE CR1 -561 1016 767 315 225 77 153 chr4 92982237 92982475 -91306187 + MIR SINE MIR 3 220 -42 380 271 10 0 chr4 92983825 92983921 -91304741 - MER5A DNA MER1_type -83 106 10 592 232 200 22 chr4 92983948 92984318 -91304344 + MER113 DNA MER1_type? 85 520 -1 839 43 35 17 chr4 92984718 92984834 -91303828 + L1PA3 LINE L1 6038 6155 0 3833 111 88 7 chr4 92985927 92986623 -91302039 - Tigger3(Golem) DNA MER2_type -1 3028 2277 521 192 81 0 chr4 92986615 92986714 -91301948 - Tigger3(Golem) DNA MER2_type -2922 107 1 * 450 306 101 10 chr4 92988264 92988463 -91300199 + MIR SINE MIR 5 221 -41 1676 178 0 14 chr4 92989717 92990003 -91298659 + AluJo SINE Alu 1 282 -30 228 35 0 0 chr4 92990003 92990032 -91298630 + (ATTAG)n Simple_repeat Simple_repeat 4 32 0 2077 179 92 25 chr4 92990202 92990638 -91298024 + LTR40c LTR ERVL 1 465 0 725 154 103 45 chr4 92990643 92990799 -91297863 + MER21A LTR ERV1 414 578 -353 259 207 305 0 chr4 92992025 92992107 -91296555 + MER91C DNA MER1_type 2 108 -32 23 33 0 0 chr4 92992718 92992748 -91295914 + AT_rich Low_complexity Low_complexity 1 30 0 516 271 45 13 chr4 92993001 92993156 -91295506 + LTR40b LTR ERVL 143 302 -160 182 270 54 54 chr4 92993252 92993326 -91295336 + MIR SINE MIR 152 225 -37 206 293 129 9 chr4 92994029 92994145 -91294517 + L2 LINE L2 3143 3272 0 24 0 0 0 chr4 92994703 92994727 -91293935 + AT_rich Low_complexity Low_complexity 1 24 0 2411 83 3 0 chr4 92995229 92995541 -91293121 - AluSp SINE Alu 0 313 1 447 256 8 16 chr4 92996775 92996900 -91291762 - MER94 DNA DNA -8 126 3 205 176 0 0 chr4 92999490 92999524 -91289138 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 592 214 0 29 chr4 92999911 93000051 -91288611 - MIR SINE MIR -33 229 94 253 270 45 95 chr4 93000596 93000818 -91287844 - MER102b DNA MER1_type -2 339 129 290 197 13 26 chr4 93001921 93001997 -91286665 - L1MC4 LINE L1 0 8042 7968 748 234 107 0 chr4 93002009 93002216 -91286446 - L1MC4 LINE L1 -174 7728 7418 868 242 113 56 chr4 93002352 93003004 -91285658 - L2 LINE L2 0 3313 2630 180 333 0 15 chr4 93003076 93003142 -91285520 - MER5A DNA MER1_type 0 189 125 441 268 163 38 chr4 93003926 93004065 -91284597 + MIR SINE MIR 25 200 -62 991 63 79 0 chr4 93004065 93004191 -91284471 + MER85 DNA T2_type 2 137 -2 441 268 163 38 chr4 93004191 93004260 -91284402 + MIR SINE MIR 200 259 -3 186 133 0 0 chr4 93004277 93004307 -91284355 + (TTA)n Simple_repeat Simple_repeat 3 32 0 194 357 98 0 chr4 93005089 93005201 -91283461 + MIR SINE MIR 81 203 -59 414 300 134 32 chr4 93006445 93006722 -91281940 + L2 LINE L2 2066 2370 -944 3120 131 85 57 chr4 93006792 93006962 -91281700 + L1MB5 LINE L1 5522 5686 -488 1911 162 10 0 chr4 93006962 93007252 -91281410 + AluSx SINE Alu 1 293 -19 3120 131 85 57 chr4 93007252 93007671 -91280991 + L1MB5 LINE L1 5686 6092 -82 2411 76 0 3 chr4 93007671 93007974 -91280688 + AluY SINE Alu 1 302 -9 2419 194 38 2 chr4 93007980 93008429 -91280233 - MLT1C LTR MaLR -2 465 1 3120 131 85 57 chr4 93008429 93008466 -91280196 + L1MB5 LINE L1 6096 6174 0 2244 227 113 4 chr4 93008771 93009300 -91279362 - MLT1G LTR MaLR 0 590 4 1740 188 69 3 chr4 93009311 93009646 -91279016 + MLT1A1 LTR MaLR 1 357 -8 295 266 0 0 chr4 93009739 93009803 -91278859 + L2 LINE L2 3174 3237 -35 587 269 109 21 chr4 93010626 93010864 -91277798 + MIR SINE MIR 2 260 -2 493 278 0 0 chr4 93011947 93012062 -91276600 + MIR3 SINE MIR 49 163 -45 1340 143 5 5 chr4 93012237 93012440 -91276222 + AluJb SINE Alu 23 225 -87 249 33 0 0 chr4 93012817 93012847 -91275815 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1459 108 0 10 chr4 93013608 93013802 -91274860 - AluSx SINE Alu -120 192 1 21 0 0 0 chr4 93016181 93016202 -91272460 + AT_rich Low_complexity Low_complexity 1 21 0 445 301 78 43 chr4 93016243 93016639 -91272023 - L2 LINE L2 -51 3262 2853 290 202 0 12 chr4 93017066 93017150 -91271512 + CT-rich Low_complexity Low_complexity 2 84 0 434 277 23 57 chr4 93017350 93017527 -91271135 + MER91A DNA MER1_type 1 171 -25 221 283 0 0 chr4 93018012 93018072 -91270590 - MIR SINE MIR -113 149 90 296 287 36 80 chr4 93018312 93018525 -91270137 - MLT1J LTR MaLR -273 194 13 202 274 53 80 chr4 93018702 93018815 -91269847 - L2 LINE L2 -1 3271 3162 1003 226 90 38 chr4 93018931 93019276 -91269386 + MLT1A1 LTR MaLR 1 363 -2 396 313 11 68 chr4 93019999 93020175 -91268487 - MER5B DNA MER1_type -8 170 5 2366 91 0 0 chr4 93021329 93021627 -91267035 + AluSq SINE Alu 1 298 -15 34 24 0 0 chr4 93024289 93024330 -91264332 + AT_rich Low_complexity Low_complexity 1 41 0 393 285 152 0 chr4 93024436 93024587 -91264075 + MIR SINE MIR 79 252 -10 234 156 0 0 chr4 93026394 93026439 -91262223 + Tigger1 DNA MER2_type 163 207 -2211 16027 113 42 13 chr4 93027020 93029370 -91259292 + Tigger1 DNA MER2_type 1 2418 0 2357 188 55 17 chr4 93029398 93029916 -91258746 + L1ME1 LINE L1 5639 6332 -2 1050 167 0 0 chr4 93030036 93030204 -91258458 + FRAM SINE Alu 1 168 -8 1857 130 10 40 chr4 93030573 93030874 -91257788 + AluJb SINE Alu 1 292 -20 43778 32 22 1 chr4 93030877 93036905 -91251757 + L1HS LINE L1 1 6155 0 661 202 10 7 chr4 93036933 93037125 -91251537 - LTR54B LTR ERV1 -274 224 1 1519 233 60 7 chr4 93037127 93037543 -91251119 - L1M4 LINE L1 -1140 5006 4569 1216 137 61 96 chr4 93037545 93037888 -91250774 - MER33 DNA MER1_type -6 318 1 810 219 34 26 chr4 93037982 93038251 -91250411 - L1M4 LINE L1 -1689 4457 4187 207 114 0 0 chr4 93038251 93038286 -91250376 + (A)n Simple_repeat Simple_repeat 1 35 0 433 284 68 99 chr4 93038534 93038617 -91250045 + MIR SINE MIR 34 118 -144 2369 78 7 0 chr4 93038617 93038912 -91249750 - AluY SINE Alu -14 297 1 433 284 68 99 chr4 93038912 93039050 -91249612 + MIR SINE MIR 118 248 -14 381 242 43 38 chr4 93040242 93040410 -91248252 + MIR SINE MIR 16 176 -65 22 0 0 0 chr4 93040809 93040831 -91247831 + AT_rich Low_complexity Low_complexity 1 22 0 2068 115 0 4 chr4 93041419 93041733 -91246929 - AluSc SINE Alu 0 313 1 428 273 53 0 chr4 93043456 93043588 -91245074 - MIR3 SINE MIR -31 177 39 1631 155 33 75 chr4 93043591 93043731 -91244931 + L1PB4 LINE L1 5835 5979 -177 2048 134 7 0 chr4 93043731 93044021 -91244641 + AluSx SINE Alu 1 292 -20 1631 155 33 75 chr4 93044021 93044215 -91244447 + L1PB4 LINE L1 5979 6155 -1 732 168 0 24 chr4 93045101 93045226 -91243436 + FLAM_A SINE Alu 1 122 -11 299 323 45 13 chr4 93045522 93045677 -91242985 - MIR SINE MIR -46 216 57 1412 94 94 5 chr4 93045851 93046064 -91242598 + L1PA13 LINE L1 5928 6159 -4 259 336 164 9 chr4 93046493 93046603 -91242059 - L2 LINE L2 -77 3195 3069 2358 188 34 9 chr4 93047017 93047464 -91241198 - LTR32 LTR ERVL 0 471 14 192 197 66 33 chr4 93048376 93048437 -91240225 - L2 LINE L2 -1559 1755 1693 2154 109 20 3 chr4 93050620 93050913 -91237749 + AluSx SINE Alu 1 298 -14 567 282 101 48 chr4 93051411 93051659 -91237003 - MIR SINE MIR 0 262 2 2200 118 0 3 chr4 93052280 93052584 -91236078 + AluSx SINE Alu 1 303 -9 1317 152 148 23 chr4 93052632 93052889 -91235773 - AluJo SINE Alu -23 289 1 2161 105 3 3 chr4 93053266 93053551 -91235111 - AluSc SINE Alu -24 285 1 21 36 0 0 chr4 93054100 93054128 -91234534 + AT_rich Low_complexity Low_complexity 1 28 0 815 130 46 8 chr4 93055804 93055935 -91232727 + AluJb SINE Alu 1 136 -176 405 200 110 10 chr4 93056837 93056937 -91231725 + L2 LINE L2 3195 3304 -9 1801 113 36 29 chr4 93057076 93057378 -91231284 + AluSx SINE Alu 7 310 0 227 347 71 0 chr4 93057395 93057493 -91231169 + L2 LINE L2 3116 3220 -52 668 140 0 0 chr4 93058314 93058407 -91230255 - AluSg/x SINE Alu -15 295 203 337 225 234 45 chr4 93059375 93059486 -91229176 + L2 LINE L2 3137 3268 -4 1997 106 0 0 chr4 93060815 93061080 -91227582 - AluY SINE Alu -46 265 1 224 260 96 0 chr4 93061154 93061227 -91227435 + MIR SINE MIR 110 189 -73 422 224 122 0 chr4 93061314 93061412 -91227250 - MIR SINE MIR -48 214 105 736 95 19 9 chr4 93064543 93064648 -91224014 + AluY SINE Alu 198 303 -8 1032 210 27 27 chr4 93065362 93065581 -91223081 - MER20 DNA MER1_type 0 219 1 584 288 25 6 chr4 93066159 93066319 -91222343 - MER91B DNA MER1_type -27 163 1 355 332 87 20 chr4 93066323 93066519 -91222143 + L2 LINE L2 2181 2389 -925 2237 89 0 0 chr4 93066640 93066960 -91221702 - AluSc SINE Alu 0 320 1 400 234 45 36 chr4 93067227 93067338 -91221324 - L2 LINE L2 -14 3299 3188 310 273 15 0 chr4 93067555 93067621 -91221041 + L2 LINE L2 3201 3267 -5 278 312 52 0 chr4 93067853 93067930 -91220732 - L2 LINE L2 -3 3310 3230 1019 56 8 8 chr4 93067935 93068060 -91220602 - AluSp SINE Alu -175 138 14 648 215 63 24 chr4 93068152 93068357 -91220305 - MLT1J2 LTR MaLR -237 213 1 661 291 145 14 chr4 93068413 93068702 -91219960 + L2 LINE L2 2948 3274 -39 182 291 151 35 chr4 93068753 93068839 -91219823 - L2 LINE L2 -9 3263 3168 225 263 186 39 chr4 93070283 93070439 -91218223 + MIR SINE MIR 23 201 -61 487 178 44 0 chr4 93070975 93071065 -91217597 - L1MC3 LINE L1 -23 7762 7669 329 118 0 132 chr4 93071065 93071133 -91217529 - LTR10C LTR ERV1 0 591 533 * 575 122 0 0 chr4 93071131 93071213 -91217449 + LTR10C LTR ERV1 510 591 0 2809 157 89 25 chr4 93071214 93071775 -91216887 - L1MC3 LINE L1 -113 7672 7076 394 176 0 20 chr4 93073275 93073377 -91215285 + (TG)n Simple_repeat Simple_repeat 1 100 0 452 321 162 23 chr4 93073691 93074118 -91214544 - L2 LINE L2 -2 3311 2826 371 232 12 0 chr4 93074144 93074226 -91214436 - L1ME3A LINE L1 -55 6115 6033 2322 104 0 7 chr4 93075249 93075556 -91213106 - AluSx SINE Alu -7 305 1 729 300 77 14 chr4 93076495 93076792 -91211870 - MLT1K LTR MaLR -128 460 145 11616 166 25 30 chr4 93076926 93077541 -91211121 + L1PB4 LINE L1 2924 3541 -2615 2317 95 0 25 chr4 93077541 93077857 -91210805 + AluY SINE Alu 1 308 -3 11616 166 25 30 chr4 93077857 93079740 -91208922 + L1PB4 LINE L1 3541 5432 -724 2128 128 16 10 chr4 93079740 93080046 -91208616 + AluSg SINE Alu 1 308 -2 11616 166 25 30 chr4 93080046 93080418 -91208244 + L1PB4 LINE L1 5432 5782 -374 306 0 0 0 chr4 93080418 93080452 -91208210 + (CA)n Simple_repeat Simple_repeat 2 35 0 11616 166 25 30 chr4 93080452 93080826 -91207836 + L1PB4 LINE L1 5782 6156 0 2260 98 6 22 chr4 93081299 93081615 -91207047 - AluSx SINE Alu -1 311 1 536 270 142 26 chr4 93082719 93082945 -91205717 + MER112 DNA MER1_type 3 254 -2 435 256 65 65 chr4 93083089 93083288 -91205374 + MIR SINE MIR 3 201 -61 1973 145 0 7 chr4 93083508 93083804 -91204858 + AluJb SINE Alu 1 294 -18 1116 266 92 44 chr4 93083905 93084383 -91204279 - MLT1K LTR MaLR -6 582 82 216 0 0 0 chr4 93085136 93085160 -91203502 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 1907 147 0 11 chr4 93085160 93085445 -91203217 - AluJo SINE Alu -30 282 1 2286 93 0 13 chr4 93085620 93085920 -91202742 + AluSx SINE Alu 1 296 -16 202 205 0 0 chr4 93085940 93085979 -91202683 + (TATG)n Simple_repeat Simple_repeat 2 40 0 1801 165 7 19 chr4 93086598 93086907 -91201755 - AluJo SINE Alu -7 305 1 504 271 45 34 chr4 93087158 93087335 -91201327 - MIR SINE MIR -44 218 40 229 266 166 53 chr4 93087470 93087639 -91201023 - MIR3 SINE MIR -6 202 15 2208 109 7 7 chr4 93087645 93087948 -91200714 - AluSx SINE Alu -9 303 1 386 382 30 0 chr4 93088214 93088379 -91200283 - MIR SINE MIR -92 170 1 214 318 75 9 chr4 93088402 93088509 -91200153 - L3b LINE CR1 -184 1399 1286 2332 88 0 3 chr4 93088703 93088997 -91199665 + AluSx SINE Alu 1 293 -19 1639 210 135 60 chr4 93089154 93089658 -91199004 - MLT1F LTR MaLR 0 542 1 409 325 121 0 chr4 93091703 93091869 -91196793 + MIR SINE MIR 72 257 -5 27640 104 17 80 chr4 93091895 93095491 -91193171 + L1PA7 LINE L1 12 3219 -2927 2597 62 0 0 chr4 93095491 93095797 -91192865 + AluY SINE Alu 1 306 -5 27640 104 17 80 chr4 93095797 93097114 -91191548 + L1PA7 LINE L1 3219 4617 -1529 7338 59 16 0 chr4 93097114 93098268 -91190394 + L1PA7 LINE L1 4989 6153 -1 1136 182 10 112 chr4 93098289 93098585 -91190077 + AluJo SINE Alu 21 286 -26 212 83 0 28 chr4 93098587 93098623 -91190039 + (TG)n Simple_repeat Simple_repeat 2 36 0 194 385 115 0 chr4 93098627 93098723 -91189939 + MIR3 SINE MIR 81 187 -21 272 203 188 53 chr4 93098920 93099053 -91189609 + MIR SINE MIR 111 261 -1 517 296 62 22 chr4 93099674 93099900 -91188762 + MIR SINE MIR 28 262 0 675 222 122 6 chr4 93100260 93100440 -91188222 + MIR SINE MIR 8 208 -54 384 290 40 0 chr4 93102153 93102277 -91186385 + MIR SINE MIR 92 220 -42 1264 106 41 37 chr4 93103447 93103665 -91184997 - MER6 DNA MER2_type 0 865 647 688 142 0 18 chr4 93103665 93103778 -91184884 + AluSg/x SINE Alu 200 310 0 1754 153 99 46 chr4 93103778 93104160 -91184502 - MER6A DNA MER2_type -546 59 -45 338 297 213 20 chr4 93105303 93105505 -91183157 - MIR SINE MIR 0 262 22 2127 112 0 14 chr4 93105601 93105896 -91182766 + AluSx SINE Alu 1 291 -21 1713 218 47 31 chr4 93107710 93108120 -91180542 - LTR40b LTR ERVL 0 462 46 2231 78 0 0 chr4 93108120 93108388 -91180274 + AluSg SINE Alu 11 278 -32 243 190 131 20 chr4 93108671 93108801 -91179861 - MIR SINE MIR -96 166 21 652 278 38 38 chr4 93109333 93109542 -91179120 - MIR SINE MIR -25 237 29 306 318 26 123 chr4 93109587 93109814 -91178848 + L2 LINE L2 2305 2458 -856 1423 178 45 57 chr4 93109814 93110128 -91178534 - AluJo SINE Alu 0 312 3 306 318 26 123 chr4 93110128 93110403 -91178259 + L2 LINE L2 2458 2758 -556 811 179 54 18 chr4 93110470 93110638 -91178024 - MER5A DNA MER1_type 0 189 16 494 331 91 58 chr4 93110656 93111052 -91177610 + L2 LINE L2 2858 3266 -6 503 104 0 39 chr4 93111144 93111221 -91177441 + AluJ/FLAM SINE Alu 3 76 -236 2762 152 4 42 chr4 93112287 93112761 -91175901 - MSTB2 LTR MaLR -1 456 1 240 35 0 0 chr4 93113798 93113827 -91174835 + (GA)n Simple_repeat Simple_repeat 1 29 0 186 317 89 32 chr4 93113983 93114106 -91174556 - MIR SINE MIR -34 228 99 * 571 284 64 75 chr4 93114102 93114607 -91174055 + L2 LINE L2 2737 3312 -1 432 0 0 0 chr4 93115430 93115478 -91173184 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 31 26 0 0 chr4 93115513 93115551 -91173111 + AT_rich Low_complexity Low_complexity 1 38 0 619 273 80 105 chr4 93115735 93116584 -91172078 + L2 LINE L2 2442 3272 0 347 293 69 52 chr4 93117012 93117103 -91171559 + MIR SINE MIR 8 96 -166 2517 76 0 0 chr4 93117103 93117407 -91171255 - AluSc SINE Alu -5 304 1 347 293 69 52 chr4 93117407 93117489 -91171173 + MIR SINE MIR 96 184 -78 963 181 105 13 chr4 93117498 93117736 -91170926 - Charlie5 DNA MER1_type -27 2585 2326 2231 137 58 0 chr4 93117741 93118069 -91170593 + MER7A DNA MER2_type 2 346 0 686 294 25 15 chr4 93119082 93119283 -91169379 + MIR SINE MIR 52 254 -8 435 198 0 31 chr4 93120391 93120487 -91168175 - MER104 DNA Tc2 -87 93 1 2000 163 0 0 chr4 93120517 93120823 -91167839 + AluJb SINE Alu 3 308 -4 7340 49 0 1 chr4 93172788 93173681 -91114981 - L1PA5 LINE L1 -1 6153 5262 395 280 11 0 chr4 93173786 93173879 -91114783 + Tigger2 DNA MER2_type 2622 2715 -3 876 130 58 32 chr4 93173880 93174034 -91114628 - MER46A DNA MER2_type -73 163 6 2286 99 0 3 chr4 93174493 93174787 -91113875 - AluSg SINE Alu -17 293 1 334 241 0 13 chr4 93175121 93175200 -91113462 + L1ME LINE L1 5603 5680 -441 6682 64 22 0 chr4 93175229 93176452 -91112210 + L1PA7 LINE L1 4891 6134 -20 1823 136 52 73 chr4 93176516 93176899 -91111763 - THE1C LTR MaLR 0 375 1 724 204 0 0 chr4 93176937 93177079 -91111583 - Charlie1 DNA MER1_type 0 2761 2620 591 188 80 45 chr4 93177063 93177239 -91111423 - Charlie1 DNA MER1_type -2522 239 58 * 768 166 0 41 chr4 93177478 93177533 -91111129 - FLAM_C SINE Alu -173 139 83 3496 73 9 0 chr4 93177533 93177973 -91110689 + MLT2A1 LTR ERVL 1 444 0 768 166 0 41 chr4 93177973 93178062 -91110600 - FLAM_C SINE Alu -229 83 1 438 280 40 8 chr4 93178262 93178387 -91110275 + MER5A DNA MER1_type 8 136 -53 322 280 9 19 chr4 93179128 93179235 -91109427 + MIR SINE MIR 117 222 -40 2372 70 0 3 chr4 93179787 93180111 -91108551 - AluY SINE Alu 0 323 1 2863 195 28 60 chr4 93180470 93180839 -91107823 + L1MB7 LINE L1 4468 4848 -1298 1865 176 0 20 chr4 93180839 93181145 -91107517 + AluJo SINE Alu 1 300 -12 2863 195 28 60 chr4 93181145 93181171 -91107491 + L1MB7 LINE L1 4848 4873 -1273 1820 152 28 0 chr4 93181171 93181454 -91107208 + AluJb SINE Alu 1 291 -21 2863 195 28 60 chr4 93181454 93181820 -91106842 + L1MB7 LINE L1 4873 5205 -941 651 164 141 57 chr4 93181870 93182047 -91106615 + AluJo SINE Alu 118 309 -3 4255 181 34 8 chr4 93182048 93182100 -91106562 + L1MB7 LINE L1 5322 5371 -813 2454 4 4 0 chr4 93182100 93182362 -91106300 + AluYb8 SINE Alu 44 306 -12 4255 181 34 8 chr4 93182362 93183131 -91105531 + L1MB7 LINE L1 5371 6164 -20 928 194 5 16 chr4 93185502 93185693 -91102969 - MER5A DNA MER1_type 0 189 1 250 246 164 36 chr4 93185851 93185961 -91102701 + MER5A DNA MER1_type 43 166 -23 1420 155 48 52 chr4 93187387 93187658 -91101004 + AluJo SINE Alu 13 282 -30 3388 104 34 0 chr4 93188757 93189226 -91099436 + MER41A LTR ERV1 1 485 -69 1350 169 12 31 chr4 93189226 93189481 -91099181 + AluJo SINE Alu 56 305 -7 2354 90 3 0 chr4 93189486 93189786 -91098876 + AluY SINE Alu 1 301 -10 188 235 0 73 chr4 93190048 93190116 -91098546 - MIR SINE MIR 0 262 200 216 208 62 0 chr4 93190424 93190472 -91098190 + L2 LINE L2 3216 3266 -6 2346 138 25 0 chr4 93190521 93190876 -91097786 - THE1B LTR MaLR 0 364 1 1680 208 13 6 chr4 93190946 93191264 -91097398 + MLT1A1 LTR MaLR 41 360 -5 648 167 80 14 chr4 93191429 93191567 -91097095 + MLT1A2 LTR MaLR 228 374 0 2296 101 3 0 chr4 93191681 93191979 -91096683 + AluSc SINE Alu 1 299 -10 183 80 0 0 chr4 93192014 93192039 -91096623 + (TG)n Simple_repeat Simple_repeat 2 26 0 2130 101 42 33 chr4 93192039 93192355 -91096307 - AluSg SINE Alu 0 319 1 1541 152 219 17 chr4 93192457 93192813 -91095849 + MSTA LTR MaLR 1 428 0 1617 122 11 8 chr4 93193150 93193412 -91095250 - L1PA14 LINE L1 0 6161 5899 5513 95 41 24 chr4 93193474 93194502 -91094160 - L1PB1 LINE L1 -7 6144 5100 8268 203 13 20 chr4 93194514 93195204 -91093458 + L1 LINE L1 2248 2941 -3205 2412 84 0 0 chr4 93195204 93195501 -91093161 + AluY SINE Alu 1 297 -14 8268 203 13 20 chr4 93195501 93196819 -91091843 + L1 LINE L1 2941 4242 -1904 382 239 15 16 chr4 93197425 93197528 -91091134 - MER5B DNA MER1_type -2 184 85 1025 194 0 0 chr4 93197538 93197703 -91090959 - AluJb SINE Alu -17 295 131 194 350 44 33 chr4 93197871 93198054 -91090608 + L2 LINE L2 2292 2476 -838 1955 211 46 18 chr4 93198107 93198610 -91090052 - LTR40a LTR ERVL -2 517 1 238 191 48 0 chr4 93198975 93199017 -91089645 + L2 LINE L2 3215 3258 -14 449 279 126 9 chr4 93200649 93200864 -91087798 - MER102a DNA MER1_type -3 327 88 212 194 0 0 chr4 93200876 93200912 -91087750 + T-rich Low_complexity Low_complexity 1 36 0 2317 75 0 0 chr4 93200923 93201231 -91087431 + AluY SINE Alu 1 308 0 315 254 29 87 chr4 93201964 93202044 -91086618 + L1ME4a LINE L1 5725 5795 -326 1228 201 90 24 chr4 93202044 93202332 -91086330 + AluJo SINE Alu 5 311 -1 315 254 29 87 chr4 93202332 93202389 -91086273 + L1ME4a LINE L1 5795 5854 -267 2048 140 0 0 chr4 93203498 93203783 -91084879 - AluSx SINE Alu -15 297 13 464 293 49 18 chr4 93203947 93204111 -91084551 - MIR SINE MIR -74 188 20 1934 111 4 0 chr4 93204168 93204420 -91084242 + AluSx SINE Alu 19 271 -41 306 232 134 0 chr4 93205563 93205645 -91083017 - L2 LINE L2 0 3313 3221 207 0 0 0 chr4 93206485 93206508 -91082154 + (A)n Simple_repeat Simple_repeat 1 23 0 28 61 0 0 chr4 93207695 93207744 -91080918 + AT_rich Low_complexity Low_complexity 1 49 0 765 212 7 7 chr4 93207752 93207898 -91080764 - FRAM SINE Alu -25 151 6 717 200 18 0 chr4 93208347 93208517 -91080145 + L1MB3 LINE L1 4612 4784 -1362 2027 85 92 0 chr4 93208531 93208802 -91079860 + AluSp SINE Alu 1 296 -17 180 0 0 0 chr4 93208813 93208833 -91079829 + (CAA)n Simple_repeat Simple_repeat 1 20 0 4258 155 28 28 chr4 93208845 93209711 -91078951 + L1MB3 LINE L1 5318 6183 0 2980 176 111 26 chr4 93209706 93210608 -91078054 + L1ME LINE L1 783 1755 -4325 * 2160 110 0 26 chr4 93210623 93210933 -91077729 + AluSx SINE Alu 1 302 -10 198 0 0 0 chr4 93210934 93210956 -91077706 + (TA)n Simple_repeat Simple_repeat 2 23 0 714 143 200 4 chr4 93210962 93211233 -91077429 + L1ME LINE L1 1937 2302 -3892 1200 249 48 2 chr4 93211280 93211674 -91076988 + L1ME LINE L1 2249 2660 -3420 2109 112 14 7 chr4 93211716 93212012 -91076650 - AluSx SINE Alu -14 298 1 462 225 48 0 chr4 93212186 93212314 -91076348 + L1MA6 LINE L1 6055 6192 -108 274 256 131 28 chr4 93212835 93213011 -91075651 - L1MC5 LINE L1 -36 7925 7732 1550 245 2 29 chr4 93213020 93213424 -91075238 + L1M4 LINE L1 4580 4994 -1152 198 0 0 0 chr4 93213424 93213446 -91075216 + (TA)n Simple_repeat Simple_repeat 2 23 0 2363 44 0 0 chr4 93213446 93213720 -91074942 - AluY SINE Alu -21 290 17 1550 245 2 29 chr4 93213720 93213791 -91074871 + L1M4 LINE L1 4992 5043 -1103 319 149 184 0 chr4 93213784 93213871 -91074791 + L1M LINE L1 5260 5362 -880 * 1597 135 64 34 chr4 93213871 93214198 -91074464 + Tigger2a DNA MER2_type 1 337 -97 333 155 28 14 chr4 93214198 93214269 -91074393 + L1MA4A LINE L1 6186 6257 -46 2156 113 7 13 chr4 93214604 93214906 -91073756 + AluSx SINE Alu 1 300 -12 1648 154 57 7 chr4 93215946 93216226 -91072436 + AluJo SINE Alu 1 294 -18 296 296 83 0 chr4 93216476 93216608 -91072054 + MIR SINE MIR 86 228 -34 29 60 0 0 chr4 93216728 93216778 -91071884 + AT_rich Low_complexity Low_complexity 1 50 0 1511 58 0 0 chr4 93217402 93217592 -91071070 + L1PA5 LINE L1 5964 6153 -1 657 281 48 35 chr4 93217736 93217964 -91070698 - MIR SINE MIR -14 248 18 250 169 17 17 chr4 93218869 93218928 -91069734 + MER103 DNA DNA 4 62 -104 22 0 0 0 chr4 93219491 93219513 -91069149 + AT_rich Low_complexity Low_complexity 1 22 0 520 127 13 0 chr4 93219787 93219866 -91068796 - MER30 DNA MER1_type -33 197 118 13066 211 29 8 chr4 93219874 93220243 -91068419 - L1PB1 LINE L1 -5 6146 5786 2287 98 3 0 chr4 93220243 93220549 -91068113 - AluY SINE Alu -4 307 1 13066 211 29 8 chr4 93220549 93221885 -91066777 - L1PB1 LINE L1 -365 5786 4479 189 0 0 0 chr4 93221885 93221906 -91066756 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 13066 211 29 8 chr4 93221906 93224727 -91063935 - L1PB1 LINE L1 -1672 4479 1549 2352 88 3 28 chr4 93224730 93225049 -91063613 - AluSx SINE Alu -1 311 1 773 99 38 8 chr4 93225099 93225230 -91063432 - MER30 DNA MER1_type -95 135 1 245 129 143 57 chr4 93225511 93225581 -91063081 - MER116 DNA Mariner -4 76 1 371 354 60 37 chr4 93225582 93225685 -91062977 + L2 LINE L2 2577 2676 -596 2373 89 3 16 chr4 93225685 93226000 -91062662 + AluSp SINE Alu 1 311 -2 371 354 60 37 chr4 93226000 93226383 -91062279 + L2 LINE L2 2676 3084 -188 2335 101 0 0 chr4 93227013 93227310 -91061352 + AluSg SINE Alu 1 297 -13 2302 81 0 10 chr4 93227315 93227612 -91061050 - AluY SINE Alu -16 295 2 21 36 0 0 chr4 93227622 93227650 -91061012 + AT_rich Low_complexity Low_complexity 1 28 0 299 318 37 0 chr4 93227944 93228051 -91060611 - MIR SINE MIR 0 262 152 1782 154 21 7 chr4 93228867 93229210 -91059452 + AluSx SINE Alu 1 347 0 1751 175 7 10 chr4 93230175 93230467 -91058195 + AluJo SINE Alu 1 291 -21 257 218 13 26 chr4 93231256 93231334 -91057328 - L1MC5 LINE L1 -54 7907 7831 239 184 0 0 chr4 93232409 93232447 -91056215 - L3 LINE CR1 -294 1283 1246 2483 73 0 13 chr4 93232879 93233194 -91055468 + AluY SINE Alu 1 311 0 954 188 0 18 chr4 93233430 93233621 -91055041 + AluJo SINE Alu 122 309 0 5460 83 153 31 chr4 93233984 93234456 -91054206 + MER11A LTR ERVK 1 414 -852 9098 26 7 0 chr4 93234456 93236307 -91052355 + L1PA2 LINE L1 4297 6153 -2 5460 83 153 31 chr4 93236307 93236879 -91051783 + MER11A LTR ERVK 414 1266 0 2074 132 0 14 chr4 93237002 93237298 -91051364 - AluJo SINE Alu -20 292 1 21 36 0 0 chr4 93237300 93237328 -91051334 + AT_rich Low_complexity Low_complexity 1 28 0 843 143 8 0 chr4 93238069 93238195 -91050467 - FLAM_C SINE Alu -6 127 1 256 276 51 45 chr4 93238479 93238635 -91050027 - L1ME3A LINE L1 -25 6643 6487 1235 226 161 24 chr4 93238717 93239407 -91049255 - L1ME3A LINE L1 -208 6460 5650 686 181 16 8 chr4 93239408 93239535 -91049127 - AluJo SINE Alu -178 134 7 377 201 103 43 chr4 93239539 93239723 -91048939 - L1ME3A LINE L1 -978 5666 5472 1086 269 80 16 chr4 93240405 93241030 -91047632 - L1ME3A LINE L1 -1892 4752 4088 1882 104 0 94 chr4 93241096 93241424 -91047238 + AluSx SINE Alu 1 297 -15 271 298 89 18 chr4 93241438 93241606 -91047056 - L1ME3A LINE L1 -2768 3876 3697 2307 109 60 21 chr4 93241690 93242037 -91046625 - L1PB3 LINE L1 0 6154 5785 207 0 0 0 chr4 93242037 93242060 -91046602 + (TG)n Simple_repeat Simple_repeat 2 24 0 2307 109 60 21 chr4 93242060 93242128 -91046534 - L1PB3 LINE L1 -369 5785 5721 750 174 37 0 chr4 93242240 93242401 -91046261 + L1 LINE L1 3215 3381 -2765 1750 267 112 16 chr4 93242431 93243417 -91045245 - L1M4 LINE L1 -3038 3606 2566 579 276 74 54 chr4 93243806 93244382 -91044280 - L1M4 LINE L1 -4832 1710 1148 747 325 77 10 chr4 93245709 93246204 -91042458 + L2 LINE L2 2035 2562 -752 510 229 169 60 chr4 93246206 93246507 -91042155 - HAL1 LINE L1 -544 1963 1630 370 319 14 35 chr4 93246631 93246772 -91041890 + L2 LINE L2 3134 3271 -1 1895 167 3 0 chr4 93247157 93247462 -91041200 + AluSx SINE Alu 1 306 -6 364 250 181 12 chr4 93247949 93248197 -91040465 - HAL1 LINE L1 -72 2435 2146 1119 240 140 31 chr4 93248211 93248669 -91039993 - HAL1 LINE L1 -443 2064 1557 4927 132 67 35 chr4 93248684 93249358 -91039304 - L1MA5A LINE L1 -8 6289 5575 1714 164 7 27 chr4 93249358 93249656 -91039006 - AluJb SINE Alu -20 292 1 4927 132 67 35 chr4 93249656 93249922 -91038740 - L1MA5A LINE L1 -722 5575 5319 286 161 0 2 chr4 93249938 93250163 -91038499 + AluJb SINE Alu 4 278 -24 1093 201 48 0 chr4 93250164 93250432 -91038230 - L1MA5A LINE L1 -853 5293 5013 2726 162 39 4 chr4 93250432 93250944 -91037718 - L1MA5A LINE L1 -1483 4663 4134 685 264 111 23 chr4 93250943 93251250 -91037412 - HAL1 LINE L1 -940 1567 1234 * 465 211 113 88 chr4 93251414 93251608 -91037054 - HAL1 LINE L1 -1618 889 691 483 276 299 28 chr4 93251609 93252001 -91036661 - HAL1 LINE L1 -1894 613 116 374 132 19 123 chr4 93252034 93252140 -91036522 - FLAM SINE Alu 0 133 39 2339 148 62 12 chr4 93253272 93253678 -91034984 + MSTB LTR MaLR 1 426 0 299 244 165 31 chr4 93254527 93254654 -91034008 - MER112 DNA MER1_type -116 144 1 24 0 0 0 chr4 93254709 93254733 -91033929 + AT_rich Low_complexity Low_complexity 1 24 0 1107 152 109 46 chr4 93255558 93255861 -91032801 - MER33 DNA MER1_type 0 324 3 1693 162 50 0 chr4 93256812 93257090 -91031572 - AluJb SINE Alu -14 298 7 24 0 0 0 chr4 93258045 93258069 -91030593 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr4 93258154 93258191 -91030471 + AT_rich Low_complexity Low_complexity 1 37 0 1152 208 66 27 chr4 93260312 93260768 -91027894 + Charlie1a DNA MER1_type 38 1455 0 2148 106 0 0 chr4 93260799 93261082 -91027580 - AluSx SINE Alu -25 287 5 24 0 0 0 chr4 93267219 93267243 -91021419 + AT_rich Low_complexity Low_complexity 1 24 0 922 264 100 89 chr4 93269092 93269642 -91019020 + Charlie8 DNA MER1_type 1 556 -1861 998 182 108 43 chr4 93271393 93271698 -91016964 - MER33 DNA MER1_type -7 317 1 207 0 0 0 chr4 93271878 93271901 -91016761 + (CA)n Simple_repeat Simple_repeat 2 24 0 23 33 0 0 chr4 93272926 93272956 -91015706 + AT_rich Low_complexity Low_complexity 1 30 0 219 288 27 27 chr4 93273700 93273773 -91014889 + L2 LINE L2 3234 3306 -7 1947 182 79 29 chr4 93274072 93274517 -91014145 + MLT1C LTR MaLR 1 467 0 1483 250 89 82 chr4 93274643 93275405 -91013257 + L1MCc LINE L1 956 1711 -5230 2299 194 88 12 chr4 93275405 93275916 -91012746 + MER44D DNA MER2_type 1 605 0 1483 250 89 82 chr4 93275916 93276538 -91012124 + L1MCc LINE L1 1711 2327 -4614 1657 179 0 17 chr4 93276538 93276828 -91011834 + AluJo SINE Alu 1 285 -27 1483 250 89 82 chr4 93276828 93277061 -91011601 + L1MCc LINE L1 2327 2557 -4384 1976 144 0 13 chr4 93277061 93277367 -91011295 + AluSx SINE Alu 1 302 -10 1483 250 89 82 chr4 93277367 93277770 -91010892 + L1MCc LINE L1 2557 2956 -3985 1888 131 60 0 chr4 93277770 93278053 -91010609 + AluSg SINE Alu 1 300 -10 1483 250 89 82 chr4 93278053 93278132 -91010530 + L1MCc LINE L1 2956 3033 -3908 1725 136 21 18 chr4 93278132 93278412 -91010250 + AluSx SINE Alu 19 299 -13 1483 250 89 82 chr4 93278412 93278519 -91010143 + L1MCc LINE L1 3033 3331 -3610 236 289 31 72 chr4 93278544 93278641 -91010021 - L2 LINE L2 -55 3217 3125 2256 83 7 23 chr4 93278657 93278959 -91009703 + AluSx SINE Alu 1 297 -15 207 302 143 0 chr4 93279336 93279399 -91009263 - L2 LINE L2 -20 3293 3222 1574 227 70 15 chr4 93279666 93280181 -91008481 - L1ME1 LINE L1 -5 6161 5601 2434 112 20 3 chr4 93280259 93280615 -91008047 + THE1B LTR MaLR 1 362 -2 2169 115 60 20 chr4 93281165 93281514 -91007148 - THE1B LTR MaLR -1 363 1 11335 94 14 1 chr4 93281514 93283074 -91005588 - THE1B-int LTR MaLR 0 1580 1 2134 114 60 26 chr4 93283074 93283426 -91005236 - THE1B LTR MaLR 0 364 1 1807 152 0 26 chr4 93283893 93284195 -91004467 - AluJb SINE Alu -18 294 1 1745 140 38 17 chr4 93284490 93284783 -91003879 - AluJo SINE Alu -13 299 1 421 294 29 22 chr4 93285088 93285224 -91003438 + MIR3 SINE MIR 44 180 -28 481 296 153 63 chr4 93285529 93286022 -91002640 + L2 LINE L2 2395 2842 -471 1769 163 30 0 chr4 93286022 93286322 -91002340 - AluJo SINE Alu -3 309 1 481 296 153 63 chr4 93286322 93286654 -91002008 + L2 LINE L2 2842 3309 -4 1449 196 26 0 chr4 93287051 93287322 -91001340 - AluJo SINE Alu -26 286 9 25 0 0 0 chr4 93288221 93288246 -91000416 + AT_rich Low_complexity Low_complexity 1 25 0 195 129 0 0 chr4 93288290 93288321 -91000341 + (TATATG)n Simple_repeat Simple_repeat 6 36 0 1643 150 86 18 chr4 93288434 93288588 -91000074 - AluSx SINE Alu -13 299 157 192 40 0 0 chr4 93288588 93288613 -91000049 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1643 150 86 18 chr4 93288613 93288738 -90999924 - AluSx SINE Alu -155 157 1 1096 205 18 40 chr4 93290039 93290312 -90998350 - L1MD2 LINE L1 -12 6347 6081 32 26 0 0 chr4 93291209 93291248 -90997414 + AT_rich Low_complexity Low_complexity 1 39 0 24 77 0 0 chr4 93292003 93292055 -90996607 + AT_rich Low_complexity Low_complexity 1 52 0 293 56 0 0 chr4 93293440 93293476 -90995186 - U2 snRNA snRNA -152 36 1 2741 16 7 0 chr4 93294624 93294931 -90993731 + AluYb8 SINE Alu 1 309 -9 23 33 0 0 chr4 93295062 93295092 -90993570 + AT_rich Low_complexity Low_complexity 1 30 0 219 152 0 0 chr4 93296951 93296997 -90991665 + (TA)n Simple_repeat Simple_repeat 1 46 0 1500 192 0 52 chr4 93297962 93298137 -90990525 - AluJo SINE Alu -19 293 139 2173 114 0 0 chr4 93298137 93298426 -90990236 - AluSg SINE Alu -21 289 1 1500 192 0 52 chr4 93298426 93298557 -90990105 - AluJo SINE Alu -173 139 3 7959 44 1 0 chr4 93299172 93300169 -90988493 + L1P LINE L1 4309 5306 -840 2236 80 35 3 chr4 93300965 93301254 -90987408 + AluSg SINE Alu 1 298 -12 713 171 48 64 chr4 93301658 93301845 -90986817 - MER5A DNA MER1_type -2 187 4 1911 147 3 29 chr4 93302676 93302989 -90985673 + AluJb SINE Alu 1 305 -7 23 0 0 0 chr4 93304202 93304225 -90984437 + AT_rich Low_complexity Low_complexity 1 23 0 297 260 45 102 chr4 93305699 93305964 -90982698 - MER112 DNA MER1_type -10 250 1 4271 104 26 69 chr4 93306765 93307047 -90981615 - L1PA15 LINE L1 0 6165 5873 1831 149 0 45 chr4 93307047 93307355 -90981307 - AluSx SINE Alu -17 295 2 4271 104 26 69 chr4 93307355 93307830 -90980832 - L1PA15 LINE L1 -292 5873 5440 1366 134 5 0 chr4 93307830 93308039 -90980623 - L1P4 LINE L1 -506 5659 5450 263 326 191 52 chr4 93309365 93310099 -90978563 + L2 LINE L2 2174 3004 -268 2131 113 3 0 chr4 93310618 93310937 -90977725 + AluSq SINE Alu 4 323 0 270 261 104 30 chr4 93311730 93311864 -90976798 + MER103 DNA DNA 3 146 -20 1270 121 76 48 chr4 93312292 93312541 -90976121 + MER65A LTR ERV1 3 258 -187 3352 209 45 57 chr4 93312541 93313549 -90975113 + MER65A-int LTR ERV1 590 1585 -3286 2965 191 65 34 chr4 93313538 93314377 -90974285 + MER65A-int LTR ERV1 1747 2525 -2346 * 1550 168 68 87 chr4 93314345 93315079 -90973583 + MER65A-int LTR ERV1 1516 2407 -4351 * 657 169 50 80 chr4 93315315 93315516 -90973146 + MER65A-int LTR ERV1 3536 3730 -2868 3571 200 103 134 chr4 93315599 93316451 -90972211 + MER65A-int LTR ERV1 2493 3370 -1501 7817 67 87 125 chr4 93316451 93317890 -90970772 + SVA Other Other 1 1384 -2 277 169 17 0 chr4 93317890 93317949 -90970713 + L1MC4a LINE L1 5931 5990 -1818 3571 200 103 134 chr4 93317949 93318000 -90970662 + MER65A-int LTR ERV1 3369 3420 -1451 2319 105 0 3 chr4 93318000 93318304 -90970358 - AluSg SINE Alu -7 303 1 3571 200 103 134 chr4 93318304 93319018 -90969644 + MER65A-int LTR ERV1 3420 3764 -1107 701 111 0 0 chr4 93319018 93319117 -90969545 + AluSg/x SINE Alu 190 288 -24 3571 200 103 134 chr4 93319117 93320192 -90968470 + MER65A-int LTR ERV1 3764 4871 0 2280 119 67 44 chr4 93320195 93320625 -90968037 + MER65A LTR ERV1 5 444 -1 37604 31 27 1 chr4 93321880 93327313 -90961349 - L1PA2 LINE L1 -2 6153 580 839 20 0 0 chr4 93327282 93327380 -90961282 - L1PA2 LINE L1 -6048 98 1 * 2344 117 61 5 chr4 93327587 93327963 -90960699 - Tigger2 DNA MER2_type -49 2669 2273 296 152 0 0 chr4 93327953 93327999 -90960663 - Tigger2 DNA MER2_type -2649 69 24 * 2136 136 7 0 chr4 93328004 93328313 -90960349 - AluSx SINE Alu -1 311 1 304 367 108 7 chr4 93328566 93328705 -90959957 - L2 LINE L2 -4 3268 3116 3625 159 27 58 chr4 93328834 93329546 -90959116 + MER44D DNA MER2_type 1 690 -15 2282 119 0 3 chr4 93329671 93329982 -90958680 + AluSx SINE Alu 3 312 0 254 375 34 24 chr4 93332074 93332277 -90956385 + L2 LINE L2 2768 2973 -299 207 203 62 16 chr4 93332406 93332470 -90956192 - L2 LINE L2 -1082 2232 2166 196 414 50 0 chr4 93332493 93332592 -90956070 - L2 LINE L2 -62 3210 3107 1780 164 0 10 chr4 93333957 93334250 -90954412 - AluJb SINE Alu -22 290 1 1432 216 52 31 chr4 93334372 93334714 -90953948 + MLT2D LTR ERVL 3 355 -59 2404 94 0 0 chr4 93334714 93335023 -90953639 - AluY SINE Alu -2 309 1 1432 216 52 31 chr4 93335023 93335064 -90953598 + MLT2D LTR ERVL 355 394 -20 233 283 0 0 chr4 93335067 93335127 -90953535 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 261 150 0 0 chr4 93335128 93335168 -90953494 + MLT2D LTR ERVL 350 389 -8 257 360 84 17 chr4 93335331 93335509 -90953153 + L3 LINE CR1 1232 1421 -156 1472 196 7 14 chr4 93335880 93336160 -90952502 + AluJo SINE Alu 9 286 -26 180 200 0 0 chr4 93336163 93336203 -90952459 + (CATATA)n Simple_repeat Simple_repeat 6 45 0 714 276 22 0 chr4 93336677 93336858 -90951804 + MER5A DNA MER1_type 4 188 -1 539 147 0 18 chr4 93336871 93336980 -90951682 - MER33 DNA MER1_type -4 320 214 348 199 250 15 chr4 93336969 93337113 -90951549 - MER33 DNA MER1_type -270 54 1 * 243 139 0 0 chr4 93337431 93337467 -90951195 + U2 snRNA snRNA 1 36 -152 210 151 132 57 chr4 93337576 93337629 -90951033 + L2 LINE L2 3257 3313 0 183 80 0 0 chr4 93337911 93337936 -90950726 + (TA)n Simple_repeat Simple_repeat 2 26 0 28 71 0 0 chr4 93338617 93338673 -90949989 + AT_rich Low_complexity Low_complexity 1 56 0 782 223 70 0 chr4 93339319 93339476 -90949186 - AluJo SINE Alu -8 304 137 313 296 11 0 chr4 93339482 93339570 -90949092 + L1MC4 LINE L1 6614 6702 -1340 363 154 0 0 chr4 93339601 93339666 -90948996 + (CA)n Simple_repeat Simple_repeat 2 66 0 649 215 0 8 chr4 93339670 93339800 -90948862 - AluJo SINE Alu -183 129 1 256 315 30 24 chr4 93339805 93339970 -90948692 + L1M4 LINE L1 3983 4148 -1998 327 266 130 35 chr4 93340149 93340573 -90948089 + L1M4 LINE L1 4363 4826 -1320 25 65 0 0 chr4 93340711 93340757 -90947905 + AT_rich Low_complexity Low_complexity 1 46 0 1167 189 101 96 chr4 93341273 93341628 -90947034 + MLT1A1 LTR MaLR 1 357 -8 6492 77 18 2 chr4 93342445 93344108 -90944554 + L1PA10 LINE L1 4459 6155 -13 360 0 0 0 chr4 93344147 93344187 -90944475 + (TTATA)n Simple_repeat Simple_repeat 2 41 0 772 210 11 17 chr4 93344363 93344555 -90944107 - MER33 DNA MER1_type -259 65 1 559 300 88 48 chr4 93344556 93344739 -90943923 - HAL1b LINE L1 -743 605 431 2173 138 0 0 chr4 93344739 93345051 -90943611 - AluSx SINE Alu 0 312 1 559 300 88 48 chr4 93345051 93345370 -90943292 - HAL1b LINE L1 -917 431 83 3556 131 32 86 chr4 93346976 93347114 -90941548 - Tigger1 DNA MER2_type -1 2417 2273 2164 117 0 3 chr4 93347114 93347412 -90941250 + AluSx SINE Alu 1 297 -15 3556 131 32 86 chr4 93347412 93347896 -90940766 - Tigger1 DNA MER2_type -145 2273 1837 1868 144 47 7 chr4 93347896 93348194 -90940468 + AluSg SINE Alu 1 310 0 3556 131 32 86 chr4 93348194 93348293 -90940369 - Tigger1 DNA MER2_type -581 1837 1734 314 227 23 23 chr4 93348483 93348571 -90940091 + L1ME LINE L1 4769 4856 -1290 1756 236 4 13 chr4 93348578 93349010 -90939652 + L1ME LINE L1 5159 5584 -580 2026 108 3 17 chr4 93349010 93349490 -90939172 - AluSx SINE Alu 0 312 1 1756 236 4 13 chr4 93349490 93349582 -90939080 + L1ME LINE L1 5584 5675 -489 761 208 36 0 chr4 93349702 93349870 -90938792 + MLT1A1 LTR MaLR 192 365 0 1695 180 7 10 chr4 93350298 93350598 -90938064 + AluJo SINE Alu 1 299 -13 1046 244 84 51 chr4 93350804 93351218 -90937444 + L1M4 LINE L1 14 441 -6101 413 251 12 55 chr4 93351274 93351437 -90937225 + L1M4 LINE L1 2242 2397 -4249 279 323 50 5 chr4 93351453 93351651 -90937011 - L1M4c LINE L1 -4071 2313 2107 2340 191 28 148 chr4 93351673 93351793 -90936869 + L1M4 LINE L1 2586 2719 -3925 2407 70 3 3 chr4 93351793 93352093 -90936569 + AluY SINE Alu 1 300 -11 2340 191 28 148 chr4 93352093 93352326 -90936336 + L1M4 LINE L1 2719 2978 -3666 997 108 0 0 chr4 93352326 93352455 -90936207 + AluSq/x SINE Alu 1 129 -183 2340 191 28 148 chr4 93352455 93353036 -90935626 + L1M4 LINE L1 2978 3522 -3122 185 222 0 22 chr4 93353419 93353464 -90935198 - L2 LINE L2 -2627 687 644 10355 122 48 27 chr4 93353985 93355566 -90933096 + Tigger1 DNA MER2_type 2 1626 -792 3860 60 2 0 chr4 93355566 93356051 -90932611 - L1PA6 LINE L1 -4 6150 5665 10355 122 48 27 chr4 93356051 93356262 -90932400 + Tigger1 DNA MER2_type 1626 1831 -587 2025 95 0 0 chr4 93356262 93356524 -90932138 - AluY SINE Alu 0 311 50 21 36 0 0 chr4 93356663 93356691 -90931971 + AT_rich Low_complexity Low_complexity 1 28 0 497 303 111 5 chr4 93358406 93358604 -90930058 - MIR SINE MIR -16 246 28 2530 150 28 28 chr4 93359116 93359583 -90929079 - Tigger1 DNA MER2_type -1950 468 2 300 27 0 0 chr4 93360848 93360885 -90927777 + (TTG)n Simple_repeat Simple_repeat 2 38 0 313 283 88 0 chr4 93361330 93361443 -90927219 + MIR SINE MIR 120 242 -20 583 233 132 0 chr4 93362131 93362290 -90926372 + MER3 DNA MER1_type 1 180 -29 1977 173 47 39 chr4 93364101 93364337 -90924325 - Charlie1 DNA MER1_type -22 2739 2506 735 131 33 0 chr4 93364337 93364459 -90924203 - L1PA7 LINE L1 0 6154 6029 1977 173 47 39 chr4 93364459 93364483 -90924179 - Charlie1 DNA MER1_type -255 2506 2484 1740 175 0 29 chr4 93364483 93364798 -90923864 + AluJo SINE Alu 3 308 -4 1977 173 47 39 chr4 93364798 93365046 -90923616 - Charlie1 DNA MER1_type -277 2484 2226 343 309 194 23 chr4 93365707 93366011 -90922651 + L2 LINE L2 1804 2159 -1155 231 88 0 0 chr4 93367330 93367364 -90921298 + (T)n Simple_repeat Simple_repeat 1 34 0 275 125 25 0 chr4 93367910 93367950 -90920712 + Tigger7 DNA MER2_type 2447 2487 0 6738 40 0 1 chr4 93368057 93368884 -90919778 + L1PA4 LINE L1 5330 6155 0 2386 97 0 3 chr4 93370001 93370311 -90918351 - AluSq SINE Alu -4 309 1 1674 185 7 3 chr4 93370632 93370930 -90917732 - AluJo SINE Alu -13 299 1 49 18 0 0 chr4 93370958 93371014 -90917648 + AT_rich Low_complexity Low_complexity 1 56 0 181 49 49 86 chr4 93371015 93371096 -90917566 + (TTTA)n Simple_repeat Simple_repeat 3 80 0 27 18 0 70 chr4 93371096 93371153 -90917509 + AT_rich Low_complexity Low_complexity 1 53 0 1612 237 72 59 chr4 93371802 93372391 -90916271 - MLT1G LTR MaLR -22 572 2 835 96 27 48 chr4 93372540 93372686 -90915976 + L1PA16 LINE L1 6018 6160 -6 336 304 137 30 chr4 93372713 93372881 -90915781 - MIR SINE MIR -57 205 20 200 342 25 25 chr4 93373121 93373200 -90915462 + L2 LINE L2 3192 3270 -2 20459 51 1 0 chr4 93373906 93377287 -90911375 + L1PA6 LINE L1 2764 6137 -17 44 56 0 0 chr4 93377475 93377547 -90911115 + AT_rich Low_complexity Low_complexity 1 72 0 2339 70 0 7 chr4 93377665 93377973 -90910689 - AluY SINE Alu 0 306 1 217 290 26 24 chr4 93378249 93378342 -90910320 - MIR SINE MIR -93 115 36 26 50 0 0 chr4 93378459 93378499 -90910163 + AT_rich Low_complexity Low_complexity 1 40 0 1492 146 108 0 chr4 93378701 93378961 -90909701 - AluSx SINE Alu -16 296 9 317 326 34 56 chr4 93379840 93380018 -90908644 + MIR3 SINE MIR 16 189 -19 707 282 92 53 chr4 93380044 93380424 -90908238 + Charlie8 DNA MER1_type 99 493 -1924 2011 189 6 6 chr4 93380571 93380936 -90907726 + MLT1A1 LTR MaLR 1 365 0 192 279 63 45 chr4 93381123 93381234 -90907428 - L2 LINE L2 -849 2465 2353 7461 195 110 56 chr4 93381348 93381855 -90906807 + Cheshire DNA MER1_type 71 549 -1871 327 25 0 0 chr4 93381855 93381895 -90906767 + (CA)n Simple_repeat Simple_repeat 1 40 0 7461 195 110 56 chr4 93381895 93383518 -90905144 + Cheshire DNA MER1_type 549 2315 -105 7672 92 18 22 chr4 93383540 93384746 -90903916 + HSMAR1 DNA Mariner 1 1287 0 465 247 0 0 chr4 93384746 93384835 -90903827 + Cheshire DNA MER1_type 2332 2420 0 698 175 63 21 chr4 93384862 93385005 -90903657 + MER5A DNA MER1_type 41 189 0 335 213 181 52 chr4 93385033 93385188 -90903474 + MIR SINE MIR 84 258 -4 1338 200 150 5 chr4 93385193 93385573 -90903089 - MER63B DNA MER1_type 0 436 2 2158 117 99 56 chr4 93385757 93386183 -90902479 - Tigger2 DNA MER2_type -2 2716 2273 394 151 0 55 chr4 93386173 93386246 -90902416 - Tigger2 DNA MER2_type -2649 69 1 * 1065 195 66 71 chr4 93386627 93386991 -90901671 + MLT1A1 LTR MaLR 4 365 0 1336 145 34 26 chr4 93387038 93387272 -90901390 - MER46A DNA MER2_type 0 236 1 7696 169 23 21 chr4 93387277 93388818 -90899844 - L1 LINE L1 -837 5309 3766 4645 110 4 52 chr4 93388822 93389597 -90899065 + L1PA16 LINE L1 5420 6157 -9 1057 159 24 5 chr4 93389601 93389809 -90898853 + L1 LINE L1 3559 3770 -2376 44 35 0 0 chr4 93390774 93390832 -90897830 + AT_rich Low_complexity Low_complexity 1 58 0 244 267 95 38 chr4 93391412 93391517 -90897145 - L2 LINE L2 -1 3312 3202 258 339 97 48 chr4 93391709 93392019 -90896643 + L2 LINE L2 2560 2884 -430 2130 61 0 19 chr4 93392508 93392771 -90895891 - AluSq SINE Alu -22 291 34 21 57 0 0 chr4 93395098 93395133 -90893529 + GC_rich Low_complexity Low_complexity 1 35 0 241 126 58 48 chr4 93395463 93395606 -90893056 + (CGCGG)n Simple_repeat Simple_repeat 1 144 0 1899 157 106 8 chr4 93397066 93397462 -90891200 - MLT1C LTR MaLR -3 464 30 355 82 0 33 chr4 93397464 93397525 -90891137 + AluSg/x SINE Alu 81 139 -161 2159 113 3 31 chr4 93397525 93397843 -90890819 + AluSx SINE Alu 1 309 -3 699 291 79 14 chr4 93398467 93398745 -90889917 + L2 LINE L2 3003 3298 -15 604 231 0 0 chr4 93398745 93398862 -90889800 + FLAM_C SINE Alu 2 118 -15 2573 59 3 0 chr4 93399745 93400052 -90888610 + AluY SINE Alu 1 308 -3 2397 99 0 6 chr4 93400278 93400591 -90888071 + AluSx SINE Alu 1 311 -1 31 58 0 0 chr4 93400801 93400853 -90887809 + AT_rich Low_complexity Low_complexity 1 52 0 2372 101 7 0 chr4 93400865 93401173 -90887489 - AluSg SINE Alu 0 310 1 494 322 126 58 chr4 93401259 93401877 -90886785 - L2 LINE L2 -116 3156 2485 261 317 79 12 chr4 93401902 93402066 -90886596 - MIR SINE MIR -60 202 28 199 268 31 126 chr4 93402580 93402707 -90885955 + MIR SINE MIR 27 141 -67 309 361 14 28 chr4 93403048 93403192 -90885470 - MIR3 SINE MIR -64 144 3 276 232 0 0 chr4 93403452 93403508 -90885154 + Tigger2 DNA MER2_type 1 56 -2662 570 196 47 47 chr4 93403528 93403676 -90884986 + Tigger2 DNA MER2_type 2571 2718 0 2241 154 68 45 chr4 93404096 93404584 -90884078 - MLT1D LTR MaLR 0 505 7 200 172 17 35 chr4 93404642 93404700 -90883962 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 2405 76 0 0 chr4 93404867 93405170 -90883492 - AluY SINE Alu -8 303 1 877 304 98 34 chr4 93405422 93405899 -90882763 - L2 LINE L2 0 3313 2806 638 356 101 10 chr4 93406427 93406812 -90881850 - L2 LINE L2 -509 2805 2386 843 330 167 20 chr4 93406812 93407494 -90881168 - L2 LINE L2 -1362 1952 1171 418 312 197 0 chr4 93407503 93407721 -90880941 - L2 LINE L2 -2363 951 691 318 302 54 34 chr4 93407729 93407878 -90880784 - L2 LINE L2 -2866 448 297 1028 234 121 94 chr4 93407878 93408127 -90880535 - MLT1H1 LTR MaLR -7 548 307 180 0 0 0 chr4 93408127 93408147 -90880515 + (TC)n Simple_repeat Simple_repeat 1 20 0 1028 234 121 94 chr4 93408147 93408418 -90880244 - MLT1H1 LTR MaLR -248 307 1 205 392 77 5 chr4 93408418 93408612 -90880050 - L2 LINE L2 -3010 304 97 3505 203 78 34 chr4 93408620 93408730 -90879932 - Charlie7 DNA MER1_type 0 2612 2508 2044 139 0 3 chr4 93408730 93409032 -90879630 + AluSx SINE Alu 1 301 -11 3505 203 78 34 chr4 93409032 93410057 -90878605 - Charlie7 DNA MER1_type -104 2508 1427 2515 78 3 0 chr4 93410588 93410894 -90877768 - AluSc SINE Alu -2 307 1 1185 306 145 39 chr4 93411726 93412047 -90876615 + L2 LINE L2 2088 2374 -939 2096 133 7 0 chr4 93412047 93412340 -90876322 - AluSq SINE Alu -18 295 1 1185 306 145 39 chr4 93412340 93412641 -90876021 + L2 LINE L2 2374 2642 -671 2242 175 70 8 chr4 93412641 93413042 -90875620 + MSTB LTR MaLR 1 426 0 1185 306 145 39 chr4 93413042 93413495 -90875167 + L2 LINE L2 2642 3273 -40 22 56 0 0 chr4 93413559 93413595 -90875067 + AT_rich Low_complexity Low_complexity 1 36 0 2675 175 9 41 chr4 93413906 93414471 -90874191 - MER44D DNA MER2_type 0 605 4 443 362 130 17 chr4 93415105 93415519 -90873143 - L2 LINE L2 -457 2857 2397 2209 80 3 3 chr4 93415541 93415827 -90872835 - AluSc SINE Alu -22 287 2 2096 62 25 14 chr4 93416116 93416417 -90872245 + AluSg SINE Alu 1 304 0 842 253 18 18 chr4 93416822 93417043 -90871619 - MER58A DNA MER1_type -1 223 3 206 231 108 0 chr4 93417656 93417721 -90870941 - L2 LINE L2 0 3272 3201 354 289 55 8 chr4 93417779 93417907 -90870755 - L2 LINE L2 -1314 2000 1867 1028 236 162 56 chr4 93418061 93418561 -90870101 - LTR67 LTR ERVL 0 557 5 297 233 47 23 chr4 93419327 93419413 -90869249 + Charlie8 DNA MER1_type 3 90 -2327 901 212 17 0 chr4 93421233 93421412 -90867250 + MER3 DNA MER1_type 1 182 -27 809 181 46 97 chr4 93421458 93421717 -90866945 + L1MA4 LINE L1 6051 6296 -4 373 273 54 41 chr4 93422029 93422223 -90866439 + MIR SINE MIR 18 211 -51 649 250 242 4 chr4 93422328 93422588 -90866074 - MER5C DNA MER1_type -2 322 1 1611 157 28 24 chr4 93423554 93423841 -90864821 + AluJb SINE Alu 1 288 -24 332 239 146 8 chr4 93424049 93424179 -90864483 - L1MC4 LINE L1 -2 8040 7893 393 221 332 5 chr4 93424390 93424589 -90864073 + MLT1J LTR MaLR 78 341 -170 231 231 51 26 chr4 93424558 93424636 -90864026 + MLT1J1 LTR MaLR 247 326 -120 * 430 271 78 31 chr4 93424771 93425026 -90863636 - L1ME3A LINE L1 -223 5947 5681 409 250 58 5 chr4 93425028 93425169 -90863493 - L1M4 LINE L1 -448 5722 5593 335 331 89 16 chr4 93425630 93425878 -90862784 - L1M4 LINE L1 -1086 5060 4795 2477 50 0 3 chr4 93425929 93426226 -90862436 + AluY SINE Alu 2 297 -14 686 243 38 15 chr4 93426234 93426497 -90862165 - L1M4 LINE L1 -1415 4731 4463 276 283 76 40 chr4 93426729 93426769 -90861893 - L1M4 LINE L1 -2982 3164 3127 2269 82 6 35 chr4 93426769 93427084 -90861578 - AluSp SINE Alu -7 306 1 276 283 76 40 chr4 93427084 93427397 -90861265 - L1M4 LINE L1 -3019 3127 2798 625 311 114 27 chr4 93427399 93427924 -90860738 - L1M4 LINE L1 -3400 2746 2176 1191 133 6 6 chr4 93428299 93428507 -90860155 - AluSq SINE Alu 0 310 103 26 30 0 0 chr4 93428538 93428571 -90860091 + AT_rich Low_complexity Low_complexity 1 33 0 357 314 126 0 chr4 93428620 93428897 -90859765 - HAL1 LINE L1 -790 1717 1406 1951 237 97 29 chr4 93428905 93429501 -90859161 - L1ME1 LINE L1 -11 6153 5514 1925 162 0 0 chr4 93429528 93429860 -90858802 - AluSx SINE Alu 0 332 1 297 0 0 0 chr4 93430092 93430125 -90858537 + (CA)n Simple_repeat Simple_repeat 2 34 0 1864 183 0 0 chr4 93431098 93431388 -90857274 + AluJo SINE Alu 3 292 -20 2519 151 31 29 chr4 93431728 93432184 -90856478 - LTR32 LTR ERVL -2 469 13 1903 202 58 18 chr4 93432175 93432625 -90856037 - MLT1D LTR MaLR -12 493 26 * 268 235 31 0 chr4 93432952 93433050 -90855612 + L1M4 LINE L1 5204 5304 -842 2136 84 64 17 chr4 93433405 93433701 -90854961 + AluY SINE Alu 1 310 -1 2362 75 17 0 chr4 93435131 93435296 -90853366 - AluSx SINE Alu -13 299 125 189 0 0 0 chr4 93435296 93435317 -90853345 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2362 75 17 0 chr4 93435317 93435445 -90853217 - AluSx SINE Alu -187 125 1 2229 97 3 0 chr4 93435447 93435736 -90852926 - AluSx SINE Alu -22 290 1 21 57 0 0 chr4 93435738 93435773 -90852889 + AT_rich Low_complexity Low_complexity 1 35 0 2003 161 0 3 chr4 93436405 93436710 -90851952 - AluJb SINE Alu -7 305 2 268 279 197 0 chr4 93437189 93437311 -90851351 + L2 LINE L2 3127 3272 0 187 406 30 44 chr4 93437352 93437650 -90851012 + L2 LINE L2 2332 2625 -689 1513 211 61 23 chr4 93437806 93438459 -90850203 + MER20B DNA MER1_type 2 743 -40 620 252 52 70 chr4 93438813 93439099 -90849563 + L2 LINE L2 2170 2450 -864 1968 134 21 0 chr4 93439125 93439415 -90849247 - AluSx SINE Alu -16 296 1 274 309 102 81 chr4 93439966 93440025 -90848637 + L2 LINE L2 2810 2866 -406 1907 141 41 0 chr4 93440025 93440315 -90848347 - AluSx SINE Alu -10 302 1 274 309 102 81 chr4 93440315 93440491 -90848171 + L2 LINE L2 2866 3050 -222 1107 179 0 0 chr4 93440566 93440734 -90847928 - AluJo/FRAM SINE Alu -11 301 134 1812 133 3 88 chr4 93440734 93440920 -90847742 - AluSq SINE Alu -10 303 156 2386 87 3 0 chr4 93440920 93441220 -90847442 - AluSp SINE Alu -12 301 1 1812 133 3 88 chr4 93441220 93441364 -90847298 - AluSq SINE Alu -157 156 1 1683 211 62 24 chr4 93442330 93442780 -90845882 + MLT1C LTR MaLR 1 467 0 327 274 68 34 chr4 93443082 93443199 -90845463 + MER91C DNA MER1_type 1 121 -19 370 372 59 21 chr4 93443389 93443728 -90844934 + L2 LINE L2 2440 2791 -523 510 97 14 0 chr4 93444133 93444205 -90844457 - AluJ/FRAM SINE Alu -24 288 216 2455 48 10 0 chr4 93444313 93444608 -90844054 + AluY SINE Alu 1 298 -13 1718 166 0 59 chr4 93444673 93444809 -90843853 + AluJb SINE Alu 1 143 -169 2157 95 0 11 chr4 93444809 93445117 -90843545 + AluSg SINE Alu 1 305 0 1718 166 0 59 chr4 93445117 93445286 -90843376 + AluJb SINE Alu 143 289 -23 183 80 0 0 chr4 93445466 93445491 -90843171 + (T)n Simple_repeat Simple_repeat 1 25 0 265 159 0 0 chr4 93445491 93445535 -90843127 - MER57A LTR ERV1 -67 336 293 48 32 0 0 chr4 93445769 93445831 -90842831 + AT_rich Low_complexity Low_complexity 1 62 0 1953 148 10 10 chr4 93447063 93447374 -90841288 + AluJo SINE Alu 1 311 -1 27 29 0 0 chr4 93447813 93447847 -90840815 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr4 93447999 93448029 -90840633 + AT_rich Low_complexity Low_complexity 1 30 0 200 56 83 0 chr4 93448080 93448116 -90840546 + A-rich Low_complexity Low_complexity 3 41 0 353 272 91 30 chr4 93448347 93448612 -90840050 - L1MC4a LINE L1 -1913 5895 5615 919 194 0 0 chr4 93448612 93448772 -90839890 - AluJb SINE Alu -17 295 136 1895 161 14 0 chr4 93448817 93449108 -90839554 + AluJo SINE Alu 1 295 -17 1675 173 17 7 chr4 93449115 93449410 -90839252 + AluJb SINE Alu 1 298 -14 327 78 0 0 chr4 93449430 93449481 -90839181 + (GA)n Simple_repeat Simple_repeat 2 52 0 388 292 60 26 chr4 93449481 93449714 -90838948 - L1MC4a LINE L1 -2217 5591 5351 1000 271 57 21 chr4 93449726 93450159 -90838503 + L2 LINE L2 2707 3159 -154 1139 150 72 14 chr4 93450159 93450366 -90838296 + MER20 DNA MER1_type 1 219 0 1000 271 57 21 chr4 93450366 93450402 -90838260 + L2 LINE L2 3159 3192 -121 508 292 104 64 chr4 93450966 93451531 -90837131 - L1MC4a LINE L1 -1202 4944 4357 2292 100 3 0 chr4 93451845 93452154 -90836508 - AluSp SINE Alu -3 310 1 1702 180 156 33 chr4 93454067 93454555 -90834107 - LTR10A LTR ERV1 -61 548 1 30 0 0 0 chr4 93454561 93454591 -90834071 + AT_rich Low_complexity Low_complexity 1 30 0 467 317 40 35 chr4 93454856 93455058 -90833604 - LTR16C LTR ERVL -9 482 280 2638 161 37 35 chr4 93455068 93455615 -90833047 - MER89 LTR ERV1 0 559 12 180 0 0 0 chr4 93455617 93455637 -90833025 + (GA)n Simple_repeat Simple_repeat 2 21 0 387 120 103 94 chr4 93455849 93455889 -90832773 - MLT1C LTR MaLR -344 123 85 2366 99 0 10 chr4 93455889 93456202 -90832460 - AluSg SINE Alu 0 310 1 387 120 103 94 chr4 93456202 93456278 -90832384 - MLT1C LTR MaLR -382 85 6 2648 48 0 0 chr4 93456846 93457156 -90831506 - AluY SINE Alu -1 310 1 443 266 11 49 chr4 93457177 93457361 -90831301 - LTR67 LTR ERVL -29 528 352 401 286 25 70 chr4 93457596 93457795 -90830867 - LTR67 LTR ERVL -364 193 4 374 341 8 23 chr4 93457815 93457944 -90830718 - MIR SINE MIR -117 145 19 225 0 0 0 chr4 93458099 93458124 -90830538 + (T)n Simple_repeat Simple_repeat 1 25 0 600 291 55 55 chr4 93458141 93458395 -90830267 + MLT1K LTR MaLR 21 274 -314 1989 212 63 37 chr4 93458413 93458904 -90829758 + MLT1D LTR MaLR 1 504 -1 24 0 0 0 chr4 93459193 93459217 -90829445 + AT_rich Low_complexity Low_complexity 1 24 0 798 341 0 0 chr4 93460035 93460264 -90828398 - MIR SINE MIR -11 251 23 435 313 60 74 chr4 93460565 93460853 -90827809 + L2 LINE L2 2099 2380 -934 1950 152 7 3 chr4 93460853 93461155 -90827507 - AluJb SINE Alu -9 303 1 435 313 60 74 chr4 93461155 93461313 -90827349 + L2 LINE L2 2380 2539 -775 3431 148 74 24 chr4 93461499 93462160 -90826502 - MER72 LTR ERV1 -28 694 1 1599 198 44 11 chr4 93462160 93462523 -90826139 - MER72-int LTR ERV1 0 6758 6384 276 180 22 79 chr4 93462601 93462690 -90825972 - MER72-int LTR ERV1 -415 6343 6260 2896 154 30 48 chr4 93462693 93463316 -90825346 + LTR10E LTR ERV1 1 612 -21 2315 104 7 0 chr4 93463608 93463915 -90824747 + AluSp SINE Alu 1 309 -4 881 136 0 0 chr4 93464129 93464254 -90824408 + FLAM_C SINE Alu 1 125 -18 25 31 0 0 chr4 93464254 93464286 -90824376 + AT_rich Low_complexity Low_complexity 1 32 0 895 213 24 0 chr4 93464514 93464678 -90823984 + AluJo SINE Alu 1 168 -144 2006 120 45 0 chr4 93464707 93464998 -90823664 + AluSg SINE Alu 1 304 -6 1768 194 0 7 chr4 93465049 93465359 -90823303 - AluJo SINE Alu -4 308 1 578 315 71 20 chr4 93465387 93466047 -90822615 + L1MEc LINE L1 1046 1813 -4750 289 285 26 13 chr4 93466028 93466179 -90822483 + L1ME3 LINE L1 4981 5133 -1013 * 23 33 0 0 chr4 93466210 93466240 -90822422 + AT_rich Low_complexity Low_complexity 1 30 0 2043 224 93 7 chr4 93466333 93466935 -90821727 + L1ME3 LINE L1 5457 6110 -52 332 271 34 17 chr4 93466938 93467115 -90821547 + L1MEc LINE L1 1811 1990 -4573 1246 177 26 116 chr4 93467171 93467481 -90821181 + AluJo SINE Alu 1 282 -30 186 43 0 0 chr4 93467484 93467507 -90821155 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 402 199 89 16 chr4 93467583 93467717 -90820945 - MER33 DNA MER1_type -259 65 1 924 213 4 52 chr4 93467718 93467948 -90820714 + MER20 DNA MER1_type 1 219 0 442 258 129 52 chr4 93467948 93468181 -90820481 + L1MEc LINE L1 2224 2474 -4089 2257 97 3 0 chr4 93468182 93468470 -90820192 + AluSx SINE Alu 1 289 -23 263 287 53 0 chr4 93468519 93468669 -90819993 + L1MEc LINE L1 2506 2663 -3719 236 396 55 27 chr4 93468701 93469036 -90819626 + L2 LINE L2 2715 3057 -215 657 311 33 25 chr4 93469838 93470082 -90818580 + MIR SINE MIR 5 250 -12 1630 189 11 11 chr4 93470170 93470489 -90818173 - AluJb SINE Alu 0 322 4 337 329 93 6 chr4 93470502 93470663 -90817999 - MIR SINE MIR -15 247 73 260 282 168 13 chr4 93470921 93471070 -90817592 + MLT1J LTR MaLR 9 180 -331 327 252 84 32 chr4 93471211 93471366 -90817296 + MLT1L LTR MaLR 453 615 0 21 0 0 0 chr4 93471452 93471473 -90817189 + AT_rich Low_complexity Low_complexity 1 21 0 884 286 112 14 chr4 93471505 93471861 -90816801 + MLT1L LTR MaLR 4 394 -221 2284 105 3 0 chr4 93471944 93472248 -90816414 + AluSp SINE Alu 1 305 -8 867 315 95 34 chr4 93472323 93472931 -90815731 - L2 LINE L2 -5 3308 2656 357 214 48 71 chr4 93473195 93473321 -90815341 - MLT1J LTR MaLR -313 198 76 2230 125 0 6 chr4 93473352 93473665 -90814997 + AluY SINE Alu 1 311 0 1183 282 35 14 chr4 93473711 93474080 -90814582 - L2 LINE L2 -655 2659 2283 2082 127 3 3 chr4 93474103 93474395 -90814267 - AluSp SINE Alu -21 292 1 2732 199 34 0 chr4 93474577 93475109 -90813553 + MER68 LTR ERV1 7 556 -6 22 56 0 0 chr4 93475239 93475275 -90813387 + AT_rich Low_complexity Low_complexity 1 36 0 2093 107 31 10 chr4 93475474 93475765 -90812897 + AluSx SINE Alu 1 297 -15 1139 211 176 15 chr4 93475878 93476219 -90812443 - MSTD LTR MaLR 0 396 1 207 0 0 0 chr4 93477198 93477221 -90811441 + (TC)n Simple_repeat Simple_repeat 1 23 0 369 58 0 0 chr4 93477222 93477274 -90811388 + (CA)n Simple_repeat Simple_repeat 1 52 0 1444 251 38 103 chr4 93477451 93478287 -90810375 + MER20B DNA MER1_type 2 783 0 457 225 0 18 chr4 93479585 93479754 -90808908 + GA-rich Low_complexity Low_complexity 1 166 0 3294 64 23 0 chr4 93481331 93481767 -90806895 - MLT2A2 LTR ERVL -7 446 1 407 235 178 87 chr4 93481844 93482138 -90806524 + MLT1J LTR MaLR 99 428 -83 4568 85 58 2 chr4 93482138 93482763 -90805899 + PABL_A LTR ERV1 1 660 0 407 235 178 87 chr4 93482763 93482800 -90805862 + MLT1J LTR MaLR 428 460 -51 23 33 0 0 chr4 93482979 93483009 -90805653 + AT_rich Low_complexity Low_complexity 1 30 0 664 108 0 0 chr4 93483017 93483110 -90805552 - HY4 scRNA scRNA 0 93 1 2530 58 0 3 chr4 93483652 93483964 -90804698 - AluY SINE Alu 0 311 1 39 50 0 0 chr4 93484205 93484265 -90804397 + AT_rich Low_complexity Low_complexity 1 60 0 274 231 77 44 chr4 93484298 93484389 -90804273 - MIR SINE MIR -4 258 165 328 229 49 49 chr4 93484423 93484545 -90804117 - MER92C LTR ERV1 -5 549 428 273 243 74 88 chr4 93484567 93484667 -90803995 - MER92C LTR ERV1 -389 165 66 2189 112 7 3 chr4 93484667 93484971 -90803691 - AluSc SINE Alu -4 305 1 273 243 74 88 chr4 93484971 93485018 -90803644 - MER92C LTR ERV1 -488 66 20 308 322 0 53 chr4 93486069 93486240 -90802422 - L2 LINE L2 -580 2734 2573 1671 147 37 11 chr4 93487333 93487605 -90801057 + AluJo SINE Alu 1 279 -33 180 77 0 0 chr4 93487612 93487638 -90801024 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 1122 204 60 39 chr4 93488613 93488810 -90799852 + L1MC4 LINE L1 7188 7396 -646 3556 186 113 20 chr4 93488810 93489600 -90799062 - MER21B LTR ERV1 0 863 1 1122 204 60 39 chr4 93489600 93489736 -90798926 + L1MC4 LINE L1 7396 7528 -514 * 6740 189 26 7 chr4 93489724 93490991 -90797671 + L1M1 LINE L1 11 1301 -6264 909 227 28 24 chr4 93490991 93491210 -90797452 + MLT2D LTR ERVL 157 379 -35 492 32 0 0 chr4 93491210 93491272 -90797390 + (CA)n Simple_repeat Simple_repeat 2 63 0 909 227 28 24 chr4 93491272 93491303 -90797359 + MLT2D LTR ERVL 379 408 -6 3769 103 18 14 chr4 93493836 93494409 -90794253 - LTR8 LTR ERV1 -116 575 1 22923 121 27 48 chr4 93494409 93494802 -90793860 - HUERS-P1 LTR ERV1 0 6263 5863 185 0 40 0 chr4 93494802 93494827 -90793835 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 22923 121 27 48 chr4 93494827 93495066 -90793596 - HUERS-P1 LTR ERV1 -400 5863 5620 2213 98 3 17 chr4 93495066 93495363 -90793299 - AluSx SINE Alu -19 293 1 22923 121 27 48 chr4 93495363 93496782 -90791880 - HUERS-P1 LTR ERV1 -643 5620 4172 2071 114 7 0 chr4 93496782 93497062 -90791600 + AluSx SINE Alu 2 328 0 340 44 0 0 chr4 93497062 93497107 -90791555 + (CAAAA)n Simple_repeat Simple_repeat 2 95 0 22923 121 27 48 chr4 93497107 93498110 -90790552 - HUERS-P1 LTR ERV1 -2091 4172 3149 2255 103 3 13 chr4 93498110 93498421 -90790241 - AluSp SINE Alu -5 308 1 22923 121 27 48 chr4 93498421 93500111 -90788551 - HUERS-P1 LTR ERV1 -3114 3149 1424 276 53 0 0 chr4 93500111 93500149 -90788513 + (CA)n Simple_repeat Simple_repeat 2 39 0 240 35 0 0 chr4 93500149 93500178 -90788484 + (GA)n Simple_repeat Simple_repeat 1 29 0 22923 121 27 48 chr4 93500178 93501394 -90787268 - HUERS-P1 LTR ERV1 -4837 1426 86 1942 166 12 63 chr4 93501492 93501903 -90786759 - MLT1B LTR MaLR 0 390 1 214 248 40 20 chr4 93502138 93502239 -90786423 + (TATTG)n Simple_repeat Simple_repeat 2 104 0 664 120 11 0 chr4 93502354 93502446 -90786216 - HUERS-P1 LTR ERV1 -6170 93 1 1104 98 14 0 chr4 93502446 93502589 -90786073 - LTR8 LTR ERV1 0 691 547 1884 166 0 3 chr4 93502597 93502899 -90785763 - AluJo SINE Alu -11 301 1 209 276 81 0 chr4 93502907 93502994 -90785668 + L2 LINE L2 2199 2292 -1022 223 302 0 0 chr4 93503484 93503537 -90785125 + L2 LINE L2 3134 3186 -86 1967 161 12 66 chr4 93503547 93503957 -90784705 + MLT1B LTR MaLR 3 390 0 471 328 17 6 chr4 93504455 93504629 -90784033 - MIR SINE MIR -14 248 73 342 240 32 14 chr4 93504743 93504881 -90783781 - MLT1L LTR MaLR -3 611 447 328 194 0 14 chr4 93505168 93505240 -90783422 - MLT1E3 LTR MaLR 0 624 554 5837 221 49 62 chr4 93505341 93506541 -90782121 - L1P3 LINE L1 -3991 2470 1255 180 77 0 0 chr4 93506541 93506567 -90782095 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5837 221 49 62 chr4 93506567 93507871 -90780791 - L1P3 LINE L1 -5206 1255 3 739 231 75 27 chr4 93507877 93508120 -90780542 + L1MC4 LINE L1 7809 7995 0 36 40 0 0 chr4 93508225 93508275 -90780387 + AT_rich Low_complexity Low_complexity 1 50 0 734 234 146 10 chr4 93509128 93509492 -90779170 + MLT1J2 LTR MaLR 1 449 -1 2164 129 0 13 chr4 93509893 93510202 -90778460 - AluSx SINE Alu -7 305 1 379 245 60 40 chr4 93510576 93510727 -90777935 + L1ME4a LINE L1 5850 6003 -118 26 0 0 0 chr4 93510791 93510817 -90777845 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr4 93510827 93510857 -90777805 + AT_rich Low_complexity Low_complexity 1 30 0 2291 95 0 10 chr4 93511022 93511326 -90777336 - AluSq SINE Alu -10 303 3 1959 132 0 24 chr4 93511362 93511651 -90777011 - AluSx SINE Alu -30 282 1 2636 52 0 0 chr4 93511809 93512119 -90776543 + AluY SINE Alu 1 310 -1 193 279 49 16 chr4 93512529 93512590 -90776072 + L2 LINE L2 3242 3304 -9 24 32 0 0 chr4 93513239 93513270 -90775392 + AT_rich Low_complexity Low_complexity 1 31 0 216 0 0 0 chr4 93514117 93514141 -90774521 + (A)n Simple_repeat Simple_repeat 1 24 0 28 48 0 0 chr4 93515360 93515402 -90773260 + AT_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr4 93515798 93515824 -90772838 + AT_rich Low_complexity Low_complexity 1 26 0 227 259 35 0 chr4 93516821 93516879 -90771783 + GA-rich Low_complexity Low_complexity 4 63 0 716 198 103 34 chr4 93517115 93517378 -90771284 + L1MEc LINE L1 812 1092 -5304 2120 216 62 28 chr4 93517390 93517433 -90771229 + L1MEc LINE L1 1813 1853 -4362 2031 155 22 11 chr4 93517433 93517794 -90770868 - MER47A DNA MER2_type -1 365 1 2120 216 62 28 chr4 93517794 93518473 -90770189 + L1MEc LINE L1 1853 2516 -3699 234 240 53 53 chr4 93519124 93519199 -90769463 + L2 LINE L2 3192 3266 -47 231 281 193 59 chr4 93519234 93519369 -90769293 - L2 LINE L2 -2 3270 3118 252 242 16 0 chr4 93519532 93519594 -90769068 - L2 LINE L2 -926 2388 2326 228 371 119 42 chr4 93521229 93521515 -90767147 - L2 LINE L2 -36 3236 2929 347 353 134 48 chr4 93521592 93522114 -90766548 - L2 LINE L2 -465 2849 2283 5764 62 14 9 chr4 93522369 93523131 -90765531 + MER4E LTR ERV1 1 766 0 185 250 125 50 chr4 93523205 93523285 -90765377 - L2 LINE L2 -7 3306 3221 195 204 0 0 chr4 93525320 93525374 -90763288 + A-rich Low_complexity Low_complexity 1 54 0 235 65 0 0 chr4 93525967 93525998 -90762664 + L1PB1 LINE L1 5933 5963 -188 709 158 22 50 chr4 93526900 93527039 -90761623 + AluJo SINE Alu 1 135 -177 491 202 0 0 chr4 93527065 93527149 -90761513 + FRAM SINE Alu 72 155 -21 1775 33 0 0 chr4 93527155 93527368 -90761294 + L1PA5 LINE L1 5941 6153 -1 467 116 35 0 chr4 93527904 93527990 -90760672 + L1MC3 LINE L1 7553 7641 -144 453 212 0 12 chr4 93528036 93528121 -90760541 - FRAM SINE Alu -22 154 71 279 191 45 45 chr4 93528136 93528225 -90760437 + L1MC3 LINE L1 7681 7769 -16 519 364 49 10 chr4 93528251 93528636 -90760026 + L1M4 LINE L1 3526 3925 -2221 231 97 0 0 chr4 93528636 93528667 -90759995 - Alu SINE Alu -237 65 35 491 316 40 90 chr4 93528679 93528898 -90759764 + L1M4 LINE L1 3912 4141 -2005 232 100 0 0 chr4 93528898 93528928 -90759734 + U6 snRNA snRNA 2 31 -76 491 316 40 90 chr4 93528928 93529211 -90759451 + L1M4 LINE L1 4141 4416 -1730 311 276 0 0 chr4 93529437 93529524 -90759138 + L1M4 LINE L1 4743 4829 -1317 564 167 56 0 chr4 93529573 93529699 -90758963 - MER58 DNA MER1_type -2217 203 71 2082 148 33 14 chr4 93530226 93530592 -90758070 + L1MB2 LINE L1 5797 6169 -2 205 225 0 0 chr4 93530741 93530781 -90757881 - L2 LINE L2 -12 3301 3262 21 0 0 0 chr4 93531152 93531173 -90757489 + AT_rich Low_complexity Low_complexity 1 21 0 187 265 20 41 chr4 93532323 93532372 -90756290 + MIR3 SINE MIR 112 159 -49 2350 80 13 0 chr4 93533261 93533563 -90755099 - AluY SINE Alu -5 306 1 333 229 14 0 chr4 93533895 93533965 -90754697 + MLT1L LTR MaLR 153 223 -392 1735 224 134 33 chr4 93533965 93534504 -90754158 + MLT1E2 LTR MaLR 1 593 -33 2027 106 7 3 chr4 93534605 93534887 -90753775 - AluSc SINE Alu -25 284 2 962 150 6 25 chr4 93534899 93535059 -90753603 + FRAM SINE Alu 1 151 -25 1000 291 74 3 chr4 93535188 93535484 -90753178 + MLT1H1 LTR MaLR 5 321 -234 378 174 138 37 chr4 93535453 93535562 -90753100 + MLT1H1 LTR MaLR 435 554 -1 * 260 70 23 0 chr4 93536682 93536725 -90751937 + (TA)n Simple_repeat Simple_repeat 1 44 0 2272 89 0 0 chr4 93536759 93537041 -90751621 - AluY SINE Alu -17 294 13 1452 216 70 172 chr4 93537062 93537247 -90751415 - L1MC4 LINE L1 0 8042 7840 333 0 0 0 chr4 93537247 93537284 -90751378 + (CA)n Simple_repeat Simple_repeat 2 38 0 1452 216 70 172 chr4 93537284 93537909 -90750753 - L1MC4 LINE L1 -202 7840 7153 2299 166 35 21 chr4 93537909 93538336 -90750326 + Tigger2a DNA MER2_type 2 434 0 1452 216 70 172 chr4 93538336 93539026 -90749636 - L1MC4 LINE L1 -889 7153 6407 1760 170 49 0 chr4 93539026 93539314 -90749348 - AluSx SINE Alu -7 305 4 1452 216 70 172 chr4 93539314 93539568 -90749094 - L1MC4 LINE L1 -1635 6407 6129 464 281 24 43 chr4 93539644 93539808 -90748854 + MER63A DNA MER1_type 50 210 0 400 294 49 7 chr4 93539823 93539966 -90748696 - L1MC4a LINE L1 -1769 6039 5891 505 270 22 117 chr4 93540089 93540296 -90748366 + MER5B DNA MER1_type 4 178 0 21 0 0 0 chr4 93540653 93540674 -90747988 + AT_rich Low_complexity Low_complexity 1 21 0 309 242 0 0 chr4 93540781 93540872 -90747790 + (CA)n Simple_repeat Simple_repeat 2 92 0 329 322 75 17 chr4 93540880 93541054 -90747608 + L2 LINE L2 2379 2562 -752 1357 273 132 16 chr4 93542620 93542916 -90745746 + L2 LINE L2 2499 2759 -554 342 0 0 0 chr4 93542916 93542954 -90745708 + (CA)n Simple_repeat Simple_repeat 1 38 0 1357 273 132 16 chr4 93542954 93543386 -90745276 + L2 LINE L2 2759 3313 0 1716 147 13 37 chr4 93543501 93543801 -90744861 - AluSx SINE Alu -19 293 1 2478 211 148 6 chr4 93544234 93544875 -90743787 - MER44D DNA MER2_type 0 605 2 317 313 121 12 chr4 93545341 93545507 -90743155 + MER5A DNA MER1_type 4 187 -2 2595 82 30 3 chr4 93545805 93546170 -90742492 - L1PB1 LINE L1 0 6151 5777 259 222 0 91 chr4 93546175 93546274 -90742388 + L1MC4 LINE L1 6614 6703 -1339 247 29 0 29 chr4 93546284 93546318 -90742344 + L1P5 LINE L1 5776 5808 -348 270 0 0 0 chr4 93546318 93546348 -90742314 + (TG)n Simple_repeat Simple_repeat 2 31 0 996 94 25 6 chr4 93546359 93546518 -90742144 - L1P5 LINE L1 -360 5791 5630 11436 129 27 23 chr4 93546649 93548541 -90740121 + L1PA10 LINE L1 2425 4307 -1861 2120 108 0 0 chr4 93548541 93548818 -90739844 + AluSc SINE Alu 1 277 -32 11436 129 27 23 chr4 93548818 93550181 -90738481 + L1PA10 LINE L1 4307 5700 -468 2238 126 0 0 chr4 93550181 93550491 -90738171 + AluSg SINE Alu 1 310 0 11436 129 27 23 chr4 93550491 93550952 -90737710 + L1PA10 LINE L1 5700 6158 -10 3928 215 155 25 chr4 93550944 93552207 -90736455 - L1MC4 LINE L1 -219 7823 6397 * 4217 220 70 12 chr4 93552203 93553560 -90735102 + L1M4 LINE L1 657 2107 -4539 505 210 25 25 chr4 93554056 93554175 -90734487 + MIR SINE MIR 34 152 -110 315 0 0 0 chr4 93555767 93555802 -90732860 + (CA)n Simple_repeat Simple_repeat 2 36 0 195 114 0 0 chr4 93556860 93556895 -90731767 + (TAA)n Simple_repeat Simple_repeat 1 35 0 3112 169 37 17 chr4 93558017 93558057 -90730605 - MLT2B3 LTR ERVL 0 554 516 1659 186 11 63 chr4 93558057 93558423 -90730239 - MER7A DNA MER2_type 0 346 2 3112 169 37 17 chr4 93558423 93558925 -90729737 - MLT2B3 LTR ERVL -38 516 1 3744 152 57 9 chr4 93559756 93560429 -90728233 - MER50 LTR ERV1 -29 705 1 1203 75 6 0 chr4 93561523 93561682 -90726980 - L1PA7 LINE L1 -4 6150 5991 596 329 40 22 chr4 93561699 93561927 -90726735 - MIR SINE MIR -30 232 1 257 330 96 26 chr4 93562390 93562505 -90726157 - L2 LINE L2 -1 3271 3149 358 269 59 8 chr4 93563732 93563851 -90724811 - MIR SINE MIR 0 262 138 247 329 49 63 chr4 93563858 93564001 -90724661 - MIR3 SINE MIR -54 154 14 234 246 77 0 chr4 93564749 93564814 -90723848 - L3 LINE CR1 -88 1489 1420 2682 130 9 30 chr4 93564836 93565268 -90723394 - MER57B-int LTR ERV1 -7114 423 1 2513 132 19 0 chr4 93565268 93565638 -90723024 - MER57B LTR ERV1 0 434 58 23 0 0 0 chr4 93566238 93566261 -90722401 + AT_rich Low_complexity Low_complexity 1 23 0 237 311 208 9 chr4 93566540 93566862 -90721800 - L2 LINE L2 -943 2371 1986 2252 91 3 0 chr4 93566874 93567198 -90721464 - AluSp SINE Alu 0 325 1 293 227 103 10 chr4 93567307 93567404 -90721258 + L1ME4a LINE L1 5991 6096 -25 23 33 0 0 chr4 93567618 93567648 -90721014 + AT_rich Low_complexity Low_complexity 1 30 0 202 128 28 64 chr4 93567652 93567761 -90720901 + (TTATA)n Simple_repeat Simple_repeat 5 109 0 912 236 61 5 chr4 93568079 93568291 -90720371 - MER58A DNA MER1_type 0 224 1 2313 105 0 3 chr4 93569579 93569892 -90718770 + AluSx SINE Alu 1 312 0 1491 97 18 0 chr4 93570514 93570741 -90717921 - L1MA2 LINE L1 -4 6300 6070 16077 162 24 12 chr4 93570780 93574139 -90714523 - L1MA1 LINE L1 0 7721 4295 1949 152 3 13 chr4 93574139 93574442 -90714220 - AluJo SINE Alu -12 300 1 16077 162 24 12 chr4 93574442 93575617 -90713045 - L1MA1 LINE L1 -3426 4295 3135 3804 190 35 17 chr4 93575690 93577078 -90711584 - L1MA1 LINE L1 -6102 1463 16 602 291 50 50 chr4 93578591 93578849 -90709813 + MIR SINE MIR 5 262 0 345 357 155 59 chr4 93578847 93579169 -90709493 - L2 LINE L2 -6 3266 2914 * 182 315 0 14 chr4 93579423 93579496 -90709166 - L2 LINE L2 -803 2511 2440 225 139 0 0 chr4 93579561 93579604 -90709058 + (TG)n Simple_repeat Simple_repeat 2 44 0 5816 152 11 7 chr4 93579833 93581496 -90707166 + L1PB2 LINE L1 4488 6151 0 197 143 0 20 chr4 93581720 93581769 -90706893 + (TGGA)n Simple_repeat Simple_repeat 4 51 0 180 0 0 0 chr4 93581862 93581882 -90706780 + (T)n Simple_repeat Simple_repeat 1 20 0 30 45 0 0 chr4 93581987 93582031 -90706631 + AT_rich Low_complexity Low_complexity 1 44 0 208 401 33 33 chr4 93582318 93582530 -90706132 + L2 LINE L2 2809 3020 -252 2539 52 0 0 chr4 93582695 93583002 -90705660 + AluY SINE Alu 1 307 -4 189 0 0 0 chr4 93583867 93583888 -90704774 + (T)n Simple_repeat Simple_repeat 1 21 0 394 201 216 29 chr4 93584203 93584342 -90704320 + MIR SINE MIR 23 187 -75 3255 223 93 21 chr4 93584780 93585401 -90703261 + L1ME1 LINE L1 4254 4829 -1337 180 0 0 0 chr4 93585401 93585421 -90703241 + (CAAAC)n Simple_repeat Simple_repeat 2 21 0 3255 223 93 21 chr4 93585421 93586412 -90702250 + L1ME1 LINE L1 4829 6005 -161 1234 187 59 24 chr4 93586412 93586701 -90701961 + AluJo SINE Alu 1 299 -3 3255 223 93 21 chr4 93586701 93586860 -90701802 + L1ME1 LINE L1 6005 6151 -15 209 282 0 77 chr4 93586869 93586947 -90701715 + L2 LINE L2 3192 3263 -50 317 283 109 54 chr4 93587388 93587572 -90701090 - L2 LINE L2 -421 2893 2700 331 303 54 91 chr4 93587670 93587803 -90700859 - L2 LINE L2 -508 2806 2683 2194 86 30 3 chr4 93587803 93588106 -90700556 + AluY SINE Alu 1 311 0 331 303 54 91 chr4 93588106 93588193 -90700469 - L2 LINE L2 -631 2683 2594 192 77 0 0 chr4 93589962 93589988 -90698674 + (TATG)n Simple_repeat Simple_repeat 2 27 0 695 191 0 8 chr4 93590156 93590282 -90698380 + FLAM_A SINE Alu 1 125 -8 23 33 0 0 chr4 93591414 93591444 -90697218 + AT_rich Low_complexity Low_complexity 1 30 0 588 162 35 78 chr4 93592962 93593013 -90695649 - Charlie1 DNA MER1_type -6 2755 2703 1952 98 25 0 chr4 93593013 93593323 -90695339 + AluY SINE Alu 1 317 0 588 162 35 78 chr4 93593323 93593412 -90695250 - Charlie1 DNA MER1_type -58 2703 2620 513 250 16 0 chr4 93593432 93593556 -90695106 - Charlie1 DNA MER1_type -2631 130 5 2477 67 0 0 chr4 93594288 93594586 -90694076 - AluY SINE Alu -13 298 1 263 285 56 56 chr4 93594851 93594995 -90693667 + L1ME LINE L1 348 491 -5925 715 297 59 17 chr4 93595873 93596382 -90692280 + L1ME LINE L1 1113 1789 -4748 2148 117 0 3 chr4 93596775 93597105 -90691557 - AluSq SINE Alu 0 329 1 394 246 100 9 chr4 93597547 93597657 -90691005 - MIR SINE MIR -72 190 71 300 357 24 8 chr4 93597790 93597916 -90690746 - LTR40a LTR ERVL -141 378 251 453 36 0 0 chr4 93597923 93597978 -90690684 + (TTTTA)n Simple_repeat Simple_repeat 4 58 0 6174 111 18 14 chr4 93597979 93600599 -90688063 - L1PA11 LINE L1 -3 6171 3553 420 211 94 55 chr4 93600808 93600936 -90687726 - LTR40a LTR ERVL -386 133 1 26 30 0 0 chr4 93601148 93601181 -90687481 + AT_rich Low_complexity Low_complexity 1 33 0 2298 134 12 0 chr4 93601537 93601881 -90686781 + MER7A DNA MER2_type 1 346 0 658 375 56 18 chr4 93602070 93602411 -90686251 - L2 LINE L2 -4 3268 2915 21 0 0 0 chr4 93603625 93603646 -90685016 + AT_rich Low_complexity Low_complexity 1 21 0 1946 120 0 0 chr4 93603937 93604203 -90684459 - AluSx SINE Alu -7 305 40 22 35 0 0 chr4 93604427 93604456 -90684206 + AT_rich Low_complexity Low_complexity 1 29 0 27 49 0 0 chr4 93604536 93604577 -90684085 + AT_rich Low_complexity Low_complexity 1 41 0 274 296 131 40 chr4 93604674 93604873 -90683789 - MLT1K LTR MaLR -26 562 346 24 53 0 0 chr4 93605198 93605236 -90683426 + AT_rich Low_complexity Low_complexity 1 38 0 229 295 70 31 chr4 93605307 93605436 -90683226 - L1M4 LINE L1 -1990 4156 4023 1022 179 0 0 chr4 93605479 93605652 -90683010 + FRAM SINE Alu 1 167 -9 22 0 0 0 chr4 93605664 93605686 -90682976 + AT_rich Low_complexity Low_complexity 1 22 0 1008 153 0 31 chr4 93606626 93606789 -90681873 - AluJo SINE Alu -152 160 3 2135 117 0 0 chr4 93607090 93607380 -90681282 - AluSc SINE Alu -19 290 1 887 135 0 0 chr4 93607499 93607625 -90681037 + AluJb SINE Alu 1 126 -186 367 51 0 322 chr4 93607756 93607874 -90680788 + MADE1 DNA Mariner 1 80 0 26 30 0 0 chr4 93607874 93607907 -90680755 + AT_rich Low_complexity Low_complexity 1 33 0 10051 167 11 15 chr4 93608082 93608963 -90679699 - L1PA14 LINE L1 0 6812 5928 1891 158 142 16 chr4 93608963 93609343 -90679319 + MSTA LTR MaLR 1 428 0 10051 167 11 15 chr4 93609343 93611199 -90677463 - L1PA14 LINE L1 -884 5928 4086 7489 209 85 17 chr4 93611233 93613496 -90675166 - L1PA14 LINE L1 -2684 4113 1283 1961 156 115 23 chr4 93613496 93613888 -90674774 - MSTA LTR MaLR 0 428 1 7489 209 85 17 chr4 93613888 93615265 -90673397 - L1PA14 LINE L1 -5514 1283 1 416 291 9 0 chr4 93615280 93615390 -90673272 + MER45A DNA AcHobo 67 177 -1 33 0 0 0 chr4 93615692 93615725 -90672937 + AT_rich Low_complexity Low_complexity 1 33 0 22 56 0 0 chr4 93615950 93615986 -90672676 + AT_rich Low_complexity Low_complexity 1 36 0 233 231 13 51 chr4 93618036 93618114 -90670548 + L1ME4a LINE L1 5949 6023 -98 1832 138 59 0 chr4 93618436 93618726 -90669936 - AluSq SINE Alu -5 308 2 773 246 76 73 chr4 93618835 93619205 -90669457 - MLT1A2 LTR MaLR 0 374 4 290 191 16 16 chr4 93619451 93619514 -90669148 - L1M3b LINE L1 -6215 66 4 2606 58 0 0 chr4 93619515 93619825 -90668837 - AluY SINE Alu -1 310 1 21 0 0 0 chr4 93620091 93620112 -90668550 + AT_rich Low_complexity Low_complexity 1 21 0 2332 226 110 42 chr4 93620138 93621166 -90667496 - L1MC5 LINE L1 -64 7897 6800 320 373 0 0 chr4 93621184 93621286 -90667376 - MIR SINE MIR -113 149 48 5090 243 61 75 chr4 93622807 93624821 -90663841 + L1M3de LINE L1 307 1933 -4720 204 40 0 0 chr4 93624821 93624846 -90663816 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 5090 243 61 75 chr4 93624846 93625049 -90663613 + L1M3de LINE L1 1933 2137 -4516 287 353 0 0 chr4 93626199 93626369 -90662293 + L1M3de LINE L1 2150 2319 -4413 1936 131 0 10 chr4 93626472 93626785 -90661877 + L1PA14 LINE L1 5852 6161 0 12991 199 32 24 chr4 93626884 93630858 -90657804 + L1P5 LINE L1 2017 6027 -365 712 182 121 0 chr4 93630881 93631013 -90657649 - L1PB4 LINE L1 -18 6138 5991 250 247 31 10 chr4 93631014 93631111 -90657551 + (TA)n Simple_repeat Simple_repeat 2 100 0 529 296 127 22 chr4 93631168 93632012 -90656650 - L1MD2 LINE L1 -355 5807 4964 249 246 29 0 chr4 93632143 93632212 -90656450 - L1MD2 LINE L1 -1314 4832 4762 787 164 8 15 chr4 93632375 93632509 -90656153 + FLAM_A SINE Alu 1 133 0 506 306 50 19 chr4 93632561 93632819 -90655843 - L1MD2 LINE L1 -1608 4538 4273 233 267 185 29 chr4 93632922 93633203 -90655459 - L1MD2 LINE L1 -1954 4192 3868 353 305 116 18 chr4 93633292 93633577 -90655085 - L1MD2 LINE L1 -2415 3731 3419 22 35 0 0 chr4 93633678 93633707 -90654955 + AT_rich Low_complexity Low_complexity 1 29 0 4763 99 4 3 chr4 93633724 93634409 -90654253 - L1PA13 LINE L1 -2 6161 5476 20162 86 4 5 chr4 93634441 93638086 -90650576 - L1PA7 LINE L1 0 6154 2508 269 119 0 34 chr4 93638128 93638187 -90650475 - L1PB1 LINE L1 -1 6150 6094 * 3805 147 13 9 chr4 93638184 93638839 -90649823 - L1P5 LINE L1 -359 5792 5130 2148 102 0 32 chr4 93638839 93639152 -90649510 - AluSc SINE Alu -6 303 1 3805 147 13 9 chr4 93639152 93639659 -90649003 - L1P5 LINE L1 -1021 5130 4627 2454 193 11 4 chr4 93639634 93640112 -90648550 - L1P LINE L1 -1127 5019 4539 * 817 299 12 12 chr4 93640139 93640390 -90648272 + ERVL LTR ERVL 2300 2550 -3214 * 1740 286 60 12 chr4 93640358 93640924 -90647738 + ERVL LTR ERVL 2691 3283 -2371 2404 250 43 21 chr4 93640931 93641822 -90646840 + L1M4 LINE L1 2200 3109 -3037 1587 227 21 26 chr4 93641964 93642409 -90646253 + MLT1D-int LTR MaLR 218 603 -768 799 267 26 22 chr4 93642461 93642693 -90645969 + MLT1D-int LTR MaLR 661 893 -478 1408 193 27 108 chr4 93642815 93643224 -90645438 + MLT1D-int LTR MaLR 982 1357 -14 600 160 47 0 chr4 93643237 93643343 -90645319 + MLT1D LTR MaLR 1 111 -394 314 162 27 0 chr4 93643335 93643409 -90645253 + MLT1D LTR MaLR 429 504 -1 * 24 32 0 0 chr4 93643611 93643642 -90645020 + AT_rich Low_complexity Low_complexity 1 31 0 321 211 66 13 chr4 93643795 93643871 -90644791 - LTR41 LTR ERVL -188 585 506 469 213 71 71 chr4 93644024 93644207 -90644455 - LTR41 LTR ERVL -589 184 2 247 267 93 70 chr4 93645564 93645736 -90642926 + MLT1L LTR MaLR 427 602 -13 409 162 32 19 chr4 93646296 93646405 -90642257 - THE1C LTR MaLR 0 428 311 33218 43 1 2 chr4 93646405 93652527 -90636135 + L1PA4 LINE L1 40 6152 -3 1549 163 31 35 chr4 93652542 93652861 -90635801 - THE1C LTR MaLR -57 318 1 1082 226 38 0 chr4 93652862 93653101 -90635561 + L1MA9 LINE L1 42 289 -6741 2626 260 62 36 chr4 93653114 93654336 -90634326 + L1MA9 LINE L1 1310 2461 -4646 7080 57 0 7 chr4 93654336 93655488 -90633174 - L1PA7 LINE L1 -5 6149 4998 2626 260 62 36 chr4 93655488 93655970 -90632692 + L1MA9 LINE L1 2461 2929 -4178 1133 129 5 21 chr4 93655998 93656191 -90632471 + L1PA8 LINE L1 7 196 -5679 16828 115 17 0 chr4 93656213 93659587 -90629075 + L1PA8 LINE L1 3101 6481 -6 959 253 21 45 chr4 93659598 93660209 -90628453 + L1M4c LINE L1 2054 2665 -3717 * 2056 192 47 13 chr4 93660197 93660729 -90627933 + L1M4c LINE L1 3128 3677 -2705 * 3337 223 85 14 chr4 93660721 93661730 -90626932 + L1MA9 LINE L1 3356 4436 -2670 4309 256 37 37 chr4 93661731 93664464 -90624198 - L1PA15-16 LINE L1 -3918 2931 2 3087 206 37 0 chr4 93664464 93665119 -90623543 + L1MA9 LINE L1 4424 5102 -2004 1998 139 7 3 chr4 93665137 93665447 -90623215 + MLT2A2 LTR ERVL 1 311 -142 5528 142 49 11 chr4 93665455 93666495 -90622167 + L1MA9 LINE L1 6048 7133 -139 204 40 0 0 chr4 93666495 93666520 -90622142 + (CA)n Simple_repeat Simple_repeat 1 25 0 5528 142 49 11 chr4 93666520 93666666 -90621996 + L1MA9 LINE L1 7133 7272 0 433 324 171 18 chr4 93668599 93668874 -90619788 + MER102b DNA MER1_type 14 330 -11 446 287 39 83 chr4 93670543 93670797 -90617865 + L2 LINE L2 2143 2385 -929 2109 125 14 0 chr4 93670800 93671095 -90617567 - AluSx SINE Alu -13 299 1 307 246 46 4 chr4 93671346 93671449 -90617213 - MLT1H1 LTR MaLR 0 595 443 344 280 293 19 chr4 93672044 93672355 -90616307 - MLT1H1 LTR MaLR -126 429 34 298 361 8 15 chr4 93672456 93672586 -90616076 + L2 LINE L2 2580 2708 -606 4883 144 28 38 chr4 93672587 93672891 -90615771 - L1PA15 LINE L1 -16 6149 5843 2398 163 44 5 chr4 93672891 93673303 -90615359 + MSTA LTR MaLR 1 428 0 4883 144 28 38 chr4 93673303 93674623 -90614039 - L1PA15 LINE L1 -322 5843 4447 639 132 28 9 chr4 93674625 93674731 -90613931 - MSTA LTR MaLR -319 109 2 1299 223 0 9 chr4 93674759 93674983 -90613679 - L1PA13 LINE L1 -6564 223 2 1147 166 5 0 chr4 93675042 93675241 -90613421 + L1P5 LINE L1 1 200 -6663 2686 125 74 40 chr4 93675243 93676000 -90612662 + L1P5 LINE L1 636 1568 -5295 * 10829 200 67 7 chr4 93675997 93676428 -90612234 + L1P5 LINE L1 3315 3719 -3148 185 0 40 0 chr4 93676428 93676453 -90612209 + (CAA)n Simple_repeat Simple_repeat 2 27 0 10829 200 67 7 chr4 93676453 93678790 -90609872 + L1P5 LINE L1 3719 6251 -616 313 269 16 127 chr4 93678917 93679170 -90609492 - MLT1H1-int LTR MaLR -186 1185 961 3598 111 20 0 chr4 93679775 93680318 -90608344 - L1PA13 LINE L1 -2 6161 5608 252 219 151 42 chr4 93680566 93680685 -90607977 - MLT1H1-int LTR MaLR -1225 146 15 694 305 31 0 chr4 93680689 93680912 -90607750 + MLT1H1 LTR MaLR 25 254 -301 3143 124 117 2 chr4 93680940 93681505 -90607157 - LTR24C LTR ERV1 0 635 6 311 345 9 26 chr4 93682652 93682768 -90605894 - MIR3 SINE MIR -48 160 47 1303 250 55 8 chr4 93683153 93683611 -90605051 - L1ME1 LINE L1 -7 6159 5607 2388 123 28 14 chr4 93683611 93683970 -90604692 - THE1B LTR MaLR 0 364 1 10778 93 61 1 chr4 93683970 93685460 -90603202 - THE1B-int LTR MaLR 0 1580 1 2210 126 36 36 chr4 93685460 93685824 -90602838 - THE1B LTR MaLR 0 364 1 295 247 45 11 chr4 93685824 93685913 -90602749 - L1ME1 LINE L1 -555 5611 5520 460 216 50 22 chr4 93686235 93686416 -90602246 + L1MEc LINE L1 889 1074 -5322 327 239 108 91 chr4 93686422 93686598 -90602064 + L3 LINE CR1 1128 1306 -271 25 31 0 0 chr4 93686609 93686641 -90602021 + AT_rich Low_complexity Low_complexity 1 32 0 14865 58 7 4 chr4 93686642 93688838 -90599824 - L1PA6 LINE L1 0 6154 3943 6724 74 31 0 chr4 93688838 93689708 -90598954 - MER11D LTR ERVK 0 897 1 14865 58 7 4 chr4 93689708 93690208 -90598454 - L1PA6 LINE L1 -2211 3943 3446 20959 124 15 18 chr4 93690209 93693581 -90595081 - L1PA6 LINE L1 -2774 3372 11 226 310 0 0 chr4 93693607 93693665 -90594997 + L3 LINE CR1 1323 1380 -197 1215 211 146 39 chr4 93693993 93694405 -90594257 + LTR40b LTR ERVL 3 458 -4 22 70 0 0 chr4 93694516 93694559 -90594103 + AT_rich Low_complexity Low_complexity 1 43 0 354 177 0 26 chr4 93694694 93694799 -90593863 + (TA)n Simple_repeat Simple_repeat 2 105 -6 1338 204 29 14 chr4 93694799 93695078 -90593584 - AluJb SINE Alu -27 285 3 354 177 0 26 chr4 93695078 93695085 -90593577 + (TA)n Simple_repeat Simple_repeat 105 111 0 22 56 0 0 chr4 93695093 93695129 -90593533 + AT_rich Low_complexity Low_complexity 1 36 0 2151 117 0 0 chr4 93695260 93695576 -90593086 - AluSg SINE Alu 0 316 1 656 281 158 0 chr4 93695618 93695839 -90592823 + MIR SINE MIR 7 262 0 14343 199 25 9 chr4 93696087 93700118 -90588544 - L1PB1 LINE L1 0 6867 2702 1924 161 0 6 chr4 93700118 93700429 -90588233 - AluSx SINE Alu -3 309 1 14343 199 25 9 chr4 93700429 93701275 -90587387 - L1PB1 LINE L1 -4165 2702 1871 270 178 0 65 chr4 93701282 93701389 -90587273 + (TA)n Simple_repeat Simple_repeat 2 101 0 * 2547 166 6 21 chr4 93701387 93701862 -90586800 - L1PB1 LINE L1 -5004 1859 1392 839 211 19 10 chr4 93701839 93702048 -90586614 - L1PB1 LINE L1 -6647 216 6 * 33 43 0 0 chr4 93702095 93702142 -90586520 + AT_rich Low_complexity Low_complexity 1 47 0 773 261 92 60 chr4 93702383 93702941 -90585721 - L1ME LINE L1 -4506 1646 1107 2269 103 0 3 chr4 93702941 93703242 -90585420 + AluY SINE Alu 1 300 -11 773 261 92 60 chr4 93703242 93703702 -90584960 - L1ME LINE L1 -5045 1107 561 1270 288 28 7 chr4 93704487 93704910 -90583752 + L1PB3 LINE L1 3 434 -6429 12476 203 28 61 chr4 93704943 93707095 -90581567 + L1PB3 LINE L1 546 2768 -4102 3939 115 26 81 chr4 93707095 93707826 -90580836 - LTR8 LTR ERV1 0 691 1 12476 203 28 61 chr4 93707826 93712505 -90576157 + L1PB3 LINE L1 2768 6128 -742 1823 183 0 0 chr4 93712505 93712790 -90575872 - AluJb SINE Alu -23 289 5 12476 203 28 61 chr4 93712790 93713508 -90575154 + L1PB3 LINE L1 6128 6868 -2 34 42 0 0 chr4 93714188 93714236 -90574426 + AT_rich Low_complexity Low_complexity 1 48 0 1943 172 34 6 chr4 93715269 93715624 -90573038 + MLT1A1 LTR MaLR 1 365 0 274 195 23 0 chr4 93716383 93716470 -90572192 + (TA)n Simple_repeat Simple_repeat 2 90 0 33 25 0 0 chr4 93716834 93716874 -90571788 + AT_rich Low_complexity Low_complexity 1 40 0 403 310 30 55 chr4 93717209 93717570 -90571092 + HAL1 LINE L1 1316 1667 -840 7134 243 14 5 chr4 93717875 93719654 -90569008 + L1P4 LINE L1 1248 3041 -3105 24577 167 11 21 chr4 93719654 93726232 -90562430 + L1PA10 LINE L1 1 6483 0 10876 187 7 20 chr4 93726225 93728378 -90560284 + L1P4 LINE L1 3025 5130 -1033 * 1951 139 4 4 chr4 93728378 93728682 -90559980 + AluSc SINE Alu 1 304 0 10876 187 7 20 chr4 93728682 93729331 -90559331 + L1P4 LINE L1 5130 5786 -377 5729 121 12 0 chr4 93729435 93729674 -90558988 + L1PA14 LINE L1 4895 5130 -1031 2078 123 7 0 chr4 93729674 93729967 -90558695 + AluSc SINE Alu 1 295 -14 5729 121 12 0 chr4 93729967 93730990 -90557672 + L1PA14 LINE L1 5130 6160 -1 349 268 354 6 chr4 93731990 93732154 -90556508 - MIR SINE MIR 0 262 42 29 47 0 0 chr4 93732674 93732717 -90555945 + AT_rich Low_complexity Low_complexity 1 43 0 502 314 98 15 chr4 93732761 93732965 -90555697 + MIR SINE MIR 18 238 -24 966 238 148 22 chr4 93733787 93734111 -90554551 - LTR50 LTR ERVL -3 792 428 26 30 0 0 chr4 93734460 93734493 -90554169 + AT_rich Low_complexity Low_complexity 1 33 0 1299 57 57 0 chr4 93735568 93735744 -90552918 - LTR12 LTR ERV1 0 714 529 325 223 20 95 chr4 93735744 93735892 -90552770 - LTR30 LTR ERV1 -42 680 544 3893 84 453 36 chr4 93735892 93736799 -90551863 - pTR5 LTR ERV1 -413 2025 741 503 182 336 0 chr4 93737111 93737254 -90551408 - LTR50 LTR ERVL -593 202 12 2449 176 74 13 chr4 93737551 93738090 -90550572 - L1MA9 LINE L1 0 6312 5741 1571 191 99 16 chr4 93738091 93738537 -90550125 - L1M3c LINE L1 -4523 2514 2032 1546 189 23 77 chr4 93738527 93738966 -90549696 - L1M3c LINE L1 -6615 415 1 * 2034 312 63 23 chr4 93739083 93740005 -90548657 - ERVL LTR ERVL -385 5379 4421 985 260 108 38 chr4 93740006 93740879 -90547783 - L1M4 LINE L1 -2454 3692 2759 2527 100 6 3 chr4 93740901 93741262 -90547400 - L1PB1 LINE L1 -5 6146 5785 241 196 36 0 chr4 93741265 93741321 -90547341 - L1MC4 LINE L1 -1340 6702 6645 252 59 0 0 chr4 93741393 93741427 -90547235 + (TG)n Simple_repeat Simple_repeat 1 34 0 297 296 83 8 chr4 93743535 93743667 -90544995 + L2 LINE L2 2333 2474 -840 463 214 152 0 chr4 93743689 93743801 -90544861 + MER94 DNA DNA 6 134 0 272 309 75 53 chr4 93743895 93744083 -90544579 + L2 LINE L2 2595 2786 -528 482 254 207 23 chr4 93744376 93744593 -90544069 + MIR SINE MIR 1 257 -5 284 322 87 26 chr4 93744615 93744730 -90543932 + L2 LINE L2 3143 3264 -8 1451 97 40 0 chr4 93744788 93745015 -90543647 + L1MB3 LINE L1 5731 5966 -217 1385 133 60 0 chr4 93745015 93745233 -90543429 + MER46A DNA MER2_type 1 231 -5 895 172 73 0 chr4 93745244 93745448 -90543214 + L1MB3 LINE L1 5964 6182 -1 344 248 53 26 chr4 93746375 93746488 -90542174 + L2 LINE L2 2238 2353 -961 248 203 43 72 chr4 93747010 93747079 -90541583 - MER5B DNA MER1_type 0 178 112 4314 233 41 56 chr4 93747081 93749013 -90539649 - L1P3 LINE L1 -4565 1886 1 1112 268 22 8 chr4 93749016 93749385 -90539277 - L1MDb LINE L1 -5279 1130 757 228 175 16 48 chr4 93749404 93749467 -90539195 - L1MDb LINE L1 -5575 834 774 272 281 56 0 chr4 93749639 93749728 -90538934 - L1MDb LINE L1 -5559 850 757 230 183 17 33 chr4 93749747 93749807 -90538855 - L1MDb LINE L1 -5575 834 776 1059 296 121 20 chr4 93750162 93751049 -90537613 - L1M4 LINE L1 -1885 4261 3286 225 0 0 0 chr4 93751075 93751100 -90537562 + (TTTTTG)n Simple_repeat Simple_repeat 4 28 0 306 0 0 0 chr4 93751161 93751195 -90537467 + (TTA)n Simple_repeat Simple_repeat 3 36 0 20066 32 3 0 chr4 93751195 93754423 -90534239 - L1PA3 LINE L1 -18 6137 2903 16569 56 63 5 chr4 93754398 93756607 -90532055 - L1PA3 LINE L1 -3807 2339 1 * 1814 190 24 31 chr4 93756813 93757235 -90531427 - L1MA9 LINE L1 0 6312 5894 6404 180 33 9 chr4 93757236 93759029 -90529633 - L1MA9 LINE L1 -478 5813 3980 6053 145 10 8 chr4 93759273 93761272 -90527390 - L1PA14 LINE L1 -9 6152 4104 21 82 0 0 chr4 93761333 93761382 -90527280 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr4 93761430 93761451 -90527211 + AT_rich Low_complexity Low_complexity 1 21 0 317 283 7 29 chr4 93761872 93761928 -90526734 - L1ME4a LINE L1 -12 6109 6053 6620 87 6 0 chr4 93761928 93763306 -90525356 + L1PA13 LINE L1 4778 6163 0 317 283 7 29 chr4 93763306 93763387 -90525275 - L1ME4a LINE L1 -68 6053 5975 27 29 0 0 chr4 93763477 93763511 -90525151 + AT_rich Low_complexity Low_complexity 1 34 0 380 266 73 68 chr4 93764239 93764416 -90524246 + MER5B DNA MER1_type 1 178 0 271 297 217 14 chr4 93766360 93766498 -90522164 + MLT1J LTR MaLR 7 172 -339 668 249 23 23 chr4 93766638 93766815 -90521847 + MLT1J LTR MaLR 297 473 -38 595 262 106 18 chr4 93767327 93767602 -90521060 - LTR43 LTR ERV1 -124 478 180 231 369 29 29 chr4 93767982 93768085 -90520577 - MIR SINE MIR -158 104 2 550 294 36 24 chr4 93769038 93769286 -90519376 - HAL1 LINE L1 -7 2500 2250 21 57 0 0 chr4 93769288 93769323 -90519339 + AT_rich Low_complexity Low_complexity 1 35 0 1355 154 29 11 chr4 93769382 93769654 -90519008 - L1MA4 LINE L1 -11 6289 6013 38 0 0 0 chr4 93769717 93769755 -90518907 + AT_rich Low_complexity Low_complexity 1 38 0 31 0 0 0 chr4 93769832 93769863 -90518799 + AT_rich Low_complexity Low_complexity 1 31 0 3415 176 33 30 chr4 93770329 93771058 -90517604 - L1MA8 LINE L1 -93 6198 5468 1984 158 118 5 chr4 93771061 93771442 -90517220 - MSTA LTR MaLR 0 428 5 8623 186 29 3 chr4 93771453 93773062 -90515600 - MSTA-int LTR MaLR -1 1650 1 2239 163 38 12 chr4 93773062 93773479 -90515183 - MSTA LTR MaLR 0 428 1 504 322 37 34 chr4 93773706 93774116 -90514546 - HAL1b LINE L1 -734 614 204 973 262 17 4 chr4 93774387 93774620 -90514042 + MER8 DNA MER2_type 1 236 -3 1740 187 18 45 chr4 93775560 93775961 -90512701 - MLT1B LTR MaLR 0 390 1 883 242 108 50 chr4 93776276 93776797 -90511865 - L1MCa LINE L1 -5019 1922 1372 949 186 0 29 chr4 93776800 93776972 -90511690 - AluJ SINE Alu -14 298 132 235 190 0 0 chr4 93776972 93777030 -90511632 + L1MC4 LINE L1 6646 6703 -1339 836 130 8 0 chr4 93777049 93777172 -90511490 - AluJ SINE Alu -188 124 1 326 107 18 0 chr4 93777193 93777249 -90511413 + (TG)n Simple_repeat Simple_repeat 2 58 0 701 230 65 68 chr4 93777264 93777573 -90511089 - L1MCa LINE L1 -5080 1343 1036 491 318 142 54 chr4 93777791 93778332 -90510330 - L1MCa LINE L1 -5824 599 11 313 308 0 19 chr4 93778814 93778921 -90509741 - MIR3 SINE MIR -6 202 98 182 351 39 13 chr4 93778905 93778982 -90509680 + L3 LINE CR1 1462 1540 -37 * 3492 167 27 15 chr4 93779960 93780521 -90508141 - L1MA7 LINE L1 -349 5942 5389 2035 141 39 30 chr4 93780521 93780882 -90507780 + THE1B LTR MaLR 1 364 0 11176 99 6 8 chr4 93780882 93782465 -90506197 + THE1B-int LTR MaLR 1 1580 0 2104 147 36 25 chr4 93782465 93782825 -90505837 + THE1B LTR MaLR 1 364 0 3492 167 27 15 chr4 93782825 93782927 -90505735 - L1MA7 LINE L1 -901 5390 5269 1473 118 108 46 chr4 93782934 93783257 -90505405 + L1MA7 LINE L1 5949 6291 0 27 49 0 0 chr4 93783505 93783546 -90505116 + AT_rich Low_complexity Low_complexity 1 41 0 227 255 21 0 chr4 93784561 93784608 -90504054 - L2 LINE L2 -31 3241 3194 22 35 0 0 chr4 93784684 93784713 -90503949 + AT_rich Low_complexity Low_complexity 1 29 0 900 193 39 81 chr4 93784911 93785196 -90503466 + L1ME1 LINE L1 5554 5826 -340 739 208 68 18 chr4 93785199 93785504 -90503158 - MLT1A2 LTR MaLR 0 374 3 980 226 43 27 chr4 93785523 93785864 -90502798 + L1ME1 LINE L1 5832 6334 0 1384 233 133 88 chr4 93786780 93787466 -90501196 + L1MC4 LINE L1 6342 7058 -984 23 0 0 0 chr4 93787494 93787517 -90501145 + AT_rich Low_complexity Low_complexity 1 23 0 838 309 80 50 chr4 93787567 93789731 -90498931 - L1M4 LINE L1 -1632 4514 2286 228 222 139 14 chr4 93790247 93790319 -90498343 + MIR SINE MIR 23 103 -105 22 0 0 0 chr4 93790693 93790715 -90497947 + AT_rich Low_complexity Low_complexity 1 22 0 189 309 91 45 chr4 93790807 93790917 -90497745 + MIR SINE MIR 37 151 -111 1305 328 70 34 chr4 93791233 93791977 -90496685 + L1MEd LINE L1 3 773 -5346 360 303 24 42 chr4 93792169 93792334 -90496328 + MLT1J LTR MaLR 1 162 -349 366 306 101 5 chr4 93792405 93792614 -90496048 + MLT1J LTR MaLR 314 593 -22 551 287 47 37 chr4 93792649 93793003 -90495659 + L1MEd LINE L1 990 1387 -4889 3156 124 21 13 chr4 93793808 93794341 -90494321 - L1MA3 LINE L1 0 6305 5769 1917 74 4 0 chr4 93794357 93794614 -90494048 - L1PA5 LINE L1 -8 6146 5889 29056 47 4 7 chr4 93794614 93798575 -90490087 - L1PA5 LINE L1 -504 5651 1701 3302 126 13 16 chr4 93798573 93799304 -90489358 - L1MA3 LINE L1 -527 5778 5053 * 5131 200 18 26 chr4 93799309 93799678 -90488984 + L1PB2 LINE L1 4027 4397 -1764 530 0 31 0 chr4 93799678 93799743 -90488919 + (TAAAA)n Simple_repeat Simple_repeat 4 70 0 5131 200 18 26 chr4 93799743 93800465 -90488197 + L1PB2 LINE L1 4397 5123 -1038 2073 106 3 3 chr4 93800465 93800758 -90487904 + AluSg SINE Alu 17 309 -1 5131 200 18 26 chr4 93800758 93801815 -90486847 + L1PB2 LINE L1 5123 6161 0 4239 138 7 0 chr4 93801816 93802539 -90486123 - L1M1 LINE L1 -4726 2839 2112 12726 156 14 2 chr4 93802548 93804834 -90483828 + L1PA11 LINE L1 3136 5444 -730 4195 109 12 17 chr4 93804838 93805481 -90483181 + L1PA11 LINE L1 5535 6174 0 231 197 0 45 chr4 93805499 93805565 -90483097 - L1M4 LINE L1 -3962 2184 2122 29 84 0 0 chr4 93805699 93805770 -90482892 + AT_rich Low_complexity Low_complexity 1 71 0 645 234 113 67 chr4 93805770 93806009 -90482653 - MIR SINE MIR 0 262 13 698 179 0 0 chr4 93806103 93806220 -90482442 + AluJ SINE Alu 15 131 -181 1025 182 0 0 chr4 93806263 93806433 -90482229 + AluJ SINE Alu 131 300 -12 539 43 0 0 chr4 93806781 93806851 -90481811 - L1PA8 LINE L1 -6 6166 6097 2277 70 40 7 chr4 93806949 93807250 -90481412 + AluY SINE Alu 1 311 0 243 296 43 52 chr4 93808900 93809015 -90479647 - L2 LINE L2 0 3272 3159 365 271 50 55 chr4 93809310 93809491 -90479171 + MLT1J LTR MaLR 1 180 -331 209 222 0 0 chr4 93809828 93809873 -90478789 + T-rich Low_complexity Low_complexity 1 45 0 279 0 0 0 chr4 93809888 93809919 -90478743 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 6502 30 0 0 chr4 93809921 93810932 -90477730 - L1PA2 LINE L1 -137 6018 5008 5595 26 0 0 chr4 93810930 93811588 -90477074 + L1PA2 LINE L1 4365 5022 -1124 * 21 57 0 0 chr4 93812804 93812839 -90475823 + AT_rich Low_complexity Low_complexity 1 35 0 2397 83 3 0 chr4 93813572 93813872 -90474790 - AluSg SINE Alu -7 303 3 295 258 76 50 chr4 93814563 93814761 -90473901 + L1M4 LINE L1 2325 2527 -3619 337 266 109 43 chr4 93814807 93814991 -90473671 + L1M4 LINE L1 3206 3401 -2745 1545 249 47 31 chr4 93815013 93815824 -90472838 + L1M4b LINE L1 1331 2250 -4709 895 286 18 0 chr4 93818325 93818545 -90470117 - MIR SINE MIR -37 225 2 25 0 0 0 chr4 93818735 93818760 -90469902 + AT_rich Low_complexity Low_complexity 1 25 0 1070 172 16 26 chr4 93819517 93819709 -90468953 - MER6B DNA MER2_type -20 190 1 22 35 0 0 chr4 93820028 93820057 -90468605 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr4 93820108 93820134 -90468528 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr4 93821720 93821751 -90466911 + AT_rich Low_complexity Low_complexity 1 31 0 479 258 79 22 chr4 93822824 93823002 -90465660 + L1ME LINE L1 5469 5656 -465 269 290 159 0 chr4 93823202 93823309 -90465353 - L2 LINE L2 -1 3312 3189 187 91 50 71 chr4 93823309 93823408 -90465254 + (TTAA)n Simple_repeat Simple_repeat 1 97 0 6541 139 22 6 chr4 93823638 93824729 -90463933 - Tigger1 DNA MER2_type -1 2417 1310 2128 114 32 8 chr4 93824737 93825234 -90463428 - MER41A LTR ERV1 -88 547 1 1479 91 19 0 chr4 93825238 93825446 -90463216 - MER41A-int LTR ERV1 -6 5940 5729 * 1701 89 66 4 chr4 93825443 93825702 -90462960 - MER41A-int LTR ERV1 -461 5485 5211 31535 108 12 54 chr4 93825707 93832124 -90456538 - L1PA7 LINE L1 -7 6147 12 9677 133 20 31 chr4 93832134 93832686 -90455976 - MER41A-int LTR ERV1 -614 4401 3844 2452 74 0 0 chr4 93832686 93832984 -90455678 + AluY SINE Alu 1 298 -13 9677 133 20 31 chr4 93832984 93835129 -90453533 - MER41A-int LTR ERV1 -1171 3844 2167 2307 127 24 3 chr4 93835125 93835851 -90452811 - MER41A-int LTR ERV1 -3929 2017 1104 * 4091 130 21 11 chr4 93835919 93836548 -90452114 - MER41A-int LTR ERV1 -5311 635 1 1042 105 7 0 chr4 93836548 93836701 -90451961 - MER41A LTR ERV1 0 635 482 * 3938 141 25 6 chr4 93836699 93837352 -90451310 - Tigger1 DNA MER2_type -1085 1333 669 1676 210 109 3 chr4 93837334 93837700 -90450962 + MSTA LTR MaLR 24 428 0 * 8181 185 59 10 chr4 93837700 93839268 -90449394 + MSTA-int LTR MaLR 1 1646 -5 1486 198 98 12 chr4 93839308 93839646 -90449016 + MSTA LTR MaLR 60 426 -2 3671 155 6 49 chr4 93839646 93840322 -90448340 - Tigger1 DNA MER2_type -1771 647 1 64 75 0 0 chr4 93840423 93840557 -90448105 + AT_rich Low_complexity Low_complexity 1 134 0 264 123 41 0 chr4 93841224 93841297 -90447365 + (TA)n Simple_repeat Simple_repeat 1 76 0 1846 171 12 15 chr4 93841654 93841993 -90446669 + MER44D DNA MER2_type 1 608 -1 355 372 47 9 chr4 93842377 93842592 -90446070 + L3 LINE CR1 1321 1543 -34 28 29 0 0 chr4 93842938 93842973 -90445689 + AT_rich Low_complexity Low_complexity 1 35 0 531 279 98 22 chr4 93842975 93843158 -90445504 - MIR SINE MIR -58 204 8 361 133 0 0 chr4 93843173 93843233 -90445429 - MLT2B1 LTR ERVL 0 520 461 188 191 48 0 chr4 93843235 93843319 -90445343 + (TA)n Simple_repeat Simple_repeat 2 89 0 539 249 0 11 chr4 93843337 93843518 -90445144 + GA-rich Low_complexity Low_complexity 2 180 0 1173 169 13 42 chr4 93843522 93843700 -90444962 - MLT2B1 LTR ERVL -291 229 58 5160 58 0 0 chr4 93843700 93844340 -90444322 + L1PA7 LINE L1 5515 6154 0 1173 169 13 42 chr4 93844340 93844397 -90444265 - MLT2B1 LTR ERVL -462 58 1 3001 172 48 17 chr4 93844397 93844707 -90443955 - ERVL-B1 LTR ERVL -7 5757 5458 1357 147 4 41 chr4 93844707 93844952 -90443710 + MER46A DNA MER2_type 1 236 0 3001 172 48 17 chr4 93844952 93845245 -90443417 - ERVL-B1 LTR ERVL -306 5458 5135 3237 74 53 0 chr4 93845245 93845675 -90442987 - MLT2A2 LTR ERVL 0 453 1 1282 143 0 0 chr4 93845711 93845900 -90442762 + AluSg/x SINE Alu 120 308 -4 209 302 36 94 chr4 93846258 93846450 -90442212 + MIR SINE MIR 26 206 -56 26 74 0 0 chr4 93846450 93846504 -90442158 + AT_rich Low_complexity Low_complexity 1 54 0 606 223 0 29 chr4 93846515 93846654 -90442008 - FLAM_A SINE Alu 0 142 8 41173 66 4 1 chr4 93847234 93853366 -90435296 + L1PA5 LINE L1 2 6152 -2 25 51 0 0 chr4 93854574 93854613 -90434049 + AT_rich Low_complexity Low_complexity 1 39 0 26 0 0 0 chr4 93854862 93854888 -90433774 + AT_rich Low_complexity Low_complexity 1 26 0 297 0 0 0 chr4 93855080 93855161 -90433501 + (TG)n Simple_repeat Simple_repeat 1 114 0 297 0 0 0 chr4 93855161 93855194 -90433468 + (TG)n Simple_repeat Simple_repeat 2 34 0 1384 282 121 26 chr4 93855222 93855412 -90433250 - L2 LINE L2 -91 3222 3051 1898 117 35 7 chr4 93855412 93855695 -90432967 - AluSx SINE Alu -21 291 1 1384 282 121 26 chr4 93855695 93856340 -90432322 - L2 LINE L2 -262 3051 2324 445 291 92 24 chr4 93856375 93856581 -90432081 - L1MEc LINE L1 -4742 1654 1435 1955 227 38 49 chr4 93857635 93858264 -90430398 + MLT1E2 LTR MaLR 5 626 0 261 285 73 44 chr4 93858349 93858486 -90430176 - L2 LINE L2 -15 3298 3158 21 36 0 0 chr4 93859231 93859259 -90429403 + AT_rich Low_complexity Low_complexity 1 28 0 286 291 190 13 chr4 93859359 93859517 -90429145 - MIR SINE MIR -75 187 2 1160 269 72 42 chr4 93859771 93859830 -90428832 + L1M4 LINE L1 3282 3338 -2808 5503 102 11 2 chr4 93859830 93860634 -90428028 + L1MA3 LINE L1 5495 6305 0 1160 269 72 42 chr4 93860634 93861527 -90427135 + L1M4 LINE L1 3338 4354 -1792 1864 205 46 68 chr4 93861527 93862089 -90426573 - MER44D DNA MER2_type 0 605 1 1160 269 72 42 chr4 93862089 93862390 -90426272 + L1M4 LINE L1 4354 4644 -1502 491 185 173 44 chr4 93862391 93862553 -90426109 + L1ME1 LINE L1 5987 6164 0 205 73 24 24 chr4 93862865 93862906 -90425756 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 339 143 0 0 chr4 93863685 93863734 -90424928 + THE1B LTR MaLR 316 364 0 25 0 0 0 chr4 93864322 93864347 -90424315 + AT_rich Low_complexity Low_complexity 1 25 0 40418 69 6 4 chr4 93864486 93870639 -90418023 - L1PA5 LINE L1 0 6154 1 620 233 12 37 chr4 93872160 93872323 -90416339 + MIR SINE MIR 15 173 -89 1810 167 21 0 chr4 93872505 93872786 -90415876 + AluSx SINE Alu 1 287 -25 372 343 28 9 chr4 93872991 93873099 -90415563 + L2 LINE L2 3149 3258 -14 212 224 30 0 chr4 93873101 93873168 -90415494 + T-rich Low_complexity Low_complexity 2 70 0 945 44 0 0 chr4 93873168 93873282 -90415380 + L1PA5 LINE L1 6011 6124 -30 288 0 0 0 chr4 93874541 93874573 -90414089 + (CA)n Simple_repeat Simple_repeat 2 33 0 609 242 0 0 chr4 93874579 93874699 -90413963 - FLAM_A SINE Alu -13 120 1 21 36 0 0 chr4 93874820 93874848 -90413814 + AT_rich Low_complexity Low_complexity 1 28 0 1393 234 29 0 chr4 93874956 93875254 -90413408 + AluJo SINE Alu 1 306 0 717 215 21 32 chr4 93876371 93876557 -90412105 + LTR41 LTR ERVL 5 188 -585 340 283 96 42 chr4 93877111 93877351 -90411311 + LTR41 LTR ERVL 510 762 -11 1113 278 171 52 chr4 93877544 93878333 -90410329 + L2 LINE L2 2232 3166 -147 1977 142 0 0 chr4 93878333 93878636 -90410026 - AluSx SINE Alu 0 305 3 1113 278 171 52 chr4 93878636 93878785 -90409877 + L2 LINE L2 3166 3296 -17 217 302 8 23 chr4 93878787 93878916 -90409746 + (TA)n Simple_repeat Simple_repeat 1 127 0 234 295 200 0 chr4 93879250 93879345 -90409317 - MLT1I LTR MaLR -227 322 209 3539 143 70 52 chr4 93879372 93879643 -90409019 + MER72 LTR ERV1 13 278 -444 1538 146 0 0 chr4 93879643 93879862 -90408800 + AluSg/x SINE Alu 77 295 -15 3539 143 70 52 chr4 93879862 93880266 -90408396 + MER72 LTR ERV1 278 700 -22 2333 68 3 7 chr4 93880386 93880682 -90407980 - AluY SINE Alu -16 295 1 28 0 0 0 chr4 93881711 93881739 -90406923 + AT_rich Low_complexity Low_complexity 1 28 0 693 361 48 17 chr4 93882427 93882842 -90405820 - L3 LINE CR1 -36 1541 1114 291 305 32 0 chr4 93883054 93883149 -90405513 - MLT1I LTR MaLR -253 156 59 329 338 61 7 chr4 93883245 93883393 -90405269 - L3 LINE CR1 -442 1135 980 433 309 48 6 chr4 93883911 93884079 -90404583 - L3 LINE CR1 -705 872 698 306 386 76 4 chr4 93884093 93884357 -90404305 - L2 LINE L2 -16 3297 3015 390 154 0 0 chr4 93884383 93884461 -90404201 + (TG)n Simple_repeat Simple_repeat 1 78 0 291 341 101 6 chr4 93884481 93884660 -90404002 - L2 LINE L2 -341 2973 2778 1061 146 6 17 chr4 93884979 93885157 -90403505 + MER46A DNA MER2_type 61 236 0 195 129 0 0 chr4 93885173 93885204 -90403458 + (CA)n Simple_repeat Simple_repeat 1 31 0 1313 181 4 13 chr4 93885213 93885450 -90403212 - ERVL LTR ERVL -395 5369 5135 3237 74 53 0 chr4 93885450 93885880 -90402782 - MLT2A2 LTR ERVL 0 453 1 1041 155 6 11 chr4 93885917 93886091 -90402571 + AluSg/x SINE Alu 120 292 -20 209 302 36 94 chr4 93886465 93886657 -90402005 + MIR SINE MIR 26 206 -56 26 74 0 0 chr4 93886657 93886711 -90401951 + AT_rich Low_complexity Low_complexity 1 54 0 850 181 0 0 chr4 93886718 93886851 -90401811 - FLAM_A SINE Alu 0 133 1 421 172 75 0 chr4 93886860 93886953 -90401709 - L1MA8 LINE L1 -57 6234 6135 243 263 0 0 chr4 93886955 93887012 -90401650 + MIR SINE MIR 200 256 -6 639 202 8 0 chr4 93887032 93887151 -90401511 - L1PA16 LINE L1 -25 6141 6022 23 0 0 0 chr4 93887151 93887174 -90401488 + AT_rich Low_complexity Low_complexity 1 23 0 1154 282 111 26 chr4 93887244 93887783 -90400879 - L2 LINE L2 -654 2660 2076 23 33 0 0 chr4 93888927 93888957 -90399705 + AT_rich Low_complexity Low_complexity 1 30 0 250 218 0 18 chr4 93889732 93889787 -90398875 - L2 LINE L2 0 3272 3219 220 289 165 0 chr4 93889781 93889878 -90398784 + L2 LINE L2 3154 3266 -6 * 2395 87 0 0 chr4 93889929 93890228 -90398434 - AluSc SINE Alu -10 299 1 1870 247 87 39 chr4 93890502 93891090 -90397572 - MLT1E3 LTR MaLR -8 616 1 309 279 224 9 chr4 93891342 93891561 -90397101 - L1MEc LINE L1 -3526 2689 2424 602 271 126 49 chr4 93891589 93892911 -90395751 - L1MEc LINE L1 -3939 2457 1035 32 0 0 0 chr4 93893224 93893256 -90395406 + AT_rich Low_complexity Low_complexity 1 32 0 213 39 0 0 chr4 93893654 93893680 -90394982 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 4799 130 8 25 chr4 93893881 93894656 -90394006 - L1PA16 LINE L1 -4 6162 5401 904 219 22 0 chr4 93894648 93894876 -90393786 + L1PA16 LINE L1 5154 5386 -760 * 2096 102 3 17 chr4 93894901 93895194 -90393468 + AluSx SINE Alu 1 289 -23 3545 143 90 38 chr4 93895348 93896062 -90392600 - Tigger3(Golem) DNA MER2_type -2 3027 2277 618 215 0 0 chr4 93896054 93896161 -90392501 - Tigger3(Golem) DNA MER2_type -2922 107 1 * 2141 116 0 3 chr4 93896571 93896855 -90391807 + AluSx SINE Alu 1 283 -29 410 236 34 54 chr4 93896856 93897004 -90391658 + MLT1J1 LTR MaLR 237 381 -65 2003 128 0 0 chr4 93897641 93897922 -90390740 + AluSq SINE Alu 1 281 -32 895 209 21 11 chr4 93898275 93898462 -90390200 + MER5A DNA MER1_type 1 189 0 41252 65 5 1 chr4 93899082 93905215 -90383447 + L1PA5 LINE L1 2 6154 0 25 0 0 0 chr4 93905354 93905379 -90383283 + AT_rich Low_complexity Low_complexity 1 25 0 339 143 0 0 chr4 93905967 93906016 -90382646 - THE1B LTR MaLR 0 364 316 711 270 125 50 chr4 93907803 93909128 -90379534 + L1MEc LINE L1 1033 2457 -3939 530 289 119 58 chr4 93909620 93909823 -90378839 + L2 LINE L2 2805 2994 -319 1864 117 35 7 chr4 93909823 93910106 -90378556 + AluSx SINE Alu 1 291 -21 530 289 119 58 chr4 93910106 93910296 -90378366 + L2 LINE L2 2994 3222 -91 259 250 17 26 chr4 93910296 93910330 -90378332 + (TA)n Simple_repeat Simple_repeat 2 35 -81 189 0 0 0 chr4 93910330 93910351 -90378311 + (CA)n Simple_repeat Simple_repeat 2 22 0 259 250 17 26 chr4 93910351 93910432 -90378230 + (TA)n Simple_repeat Simple_repeat 35 116 0 26 0 0 0 chr4 93910624 93910650 -90378012 + AT_rich Low_complexity Low_complexity 1 26 0 25 51 0 0 chr4 93910899 93910938 -90377724 + AT_rich Low_complexity Low_complexity 1 39 0 40217 70 5 4 chr4 93912144 93918297 -90370365 - L1PA5 LINE L1 0 6154 1 625 233 12 37 chr4 93919816 93919979 -90368683 + MIR SINE MIR 15 173 -89 1769 171 21 0 chr4 93920161 93920442 -90368220 + AluSx SINE Alu 1 287 -25 377 343 28 9 chr4 93920647 93920755 -90367907 + L2 LINE L2 3149 3258 -14 201 139 47 0 chr4 93920761 93920804 -90367858 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 942 44 0 0 chr4 93920824 93920938 -90367724 + L1PA5 LINE L1 6011 6124 -30 324 0 0 0 chr4 93922196 93922232 -90366430 + (CA)n Simple_repeat Simple_repeat 2 37 0 596 242 0 0 chr4 93922238 93922358 -90366304 - FLAM_A SINE Alu -13 120 1 21 36 0 0 chr4 93922479 93922507 -90366155 + AT_rich Low_complexity Low_complexity 1 28 0 1372 234 29 0 chr4 93922615 93922913 -90365749 + AluJo SINE Alu 1 306 0 713 215 21 32 chr4 93924030 93924216 -90364446 + LTR41 LTR ERVL 5 188 -585 339 291 87 37 chr4 93924770 93925011 -90363651 + LTR41 LTR ERVL 510 762 -11 1092 279 172 53 chr4 93925204 93925993 -90362669 + L2 LINE L2 2232 3166 -147 1946 142 0 0 chr4 93925993 93926296 -90362366 - AluSx SINE Alu 0 305 3 1092 279 172 53 chr4 93926296 93926445 -90362217 + L2 LINE L2 3166 3296 -17 217 302 8 23 chr4 93926447 93926576 -90362086 + (TA)n Simple_repeat Simple_repeat 1 127 0 232 295 200 0 chr4 93926910 93927005 -90361657 - MLT1I LTR MaLR -227 322 209 3521 146 69 51 chr4 93927024 93927303 -90361359 + MER72 LTR ERV1 5 278 -444 1516 146 0 0 chr4 93927303 93927522 -90361140 + AluSg/x SINE Alu 77 295 -15 3521 146 69 51 chr4 93927522 93927926 -90360736 + MER72 LTR ERV1 278 700 -22 2329 68 3 3 chr4 93928046 93928341 -90360321 - AluY SINE Alu -16 295 1 28 0 0 0 chr4 93929370 93929398 -90359264 + AT_rich Low_complexity Low_complexity 1 28 0 704 361 48 17 chr4 93930086 93930501 -90358161 - L3 LINE CR1 -36 1541 1114 293 305 32 0 chr4 93930713 93930808 -90357854 - MLT1I LTR MaLR -253 156 59 332 338 61 7 chr4 93930904 93931052 -90357610 - L3 LINE CR1 -442 1135 980 412 316 48 6 chr4 93931570 93931738 -90356924 - L3 LINE CR1 -705 872 698 312 386 76 4 chr4 93931752 93932016 -90356646 - L2 LINE L2 -16 3297 3015 426 146 0 0 chr4 93932042 93932124 -90356538 + (TG)n Simple_repeat Simple_repeat 1 82 0 289 341 101 6 chr4 93932144 93932323 -90356339 - L2 LINE L2 -341 2973 2778 365 172 0 0 chr4 93933168 93933232 -90355430 + MLT1D LTR MaLR 435 498 -7 1938 195 42 40 chr4 93934550 93934625 -90354037 + MLT1D LTR MaLR 1 74 -431 1990 196 39 30 chr4 93934625 93935088 -90353574 - MLT1C LTR MaLR 0 467 1 1938 195 42 40 chr4 93935088 93935520 -90353142 + MLT1D LTR MaLR 74 500 -5 199 398 0 31 chr4 93935656 93935784 -90352878 - L3 LINE CR1 -1 1576 1453 291 341 31 31 chr4 93935882 93936011 -90352651 - L2 LINE L2 -1 3271 3143 402 343 81 6 chr4 93936200 93936372 -90352290 - L2 LINE L2 -523 2791 2607 432 268 32 37 chr4 93936903 93937094 -90351568 + MER92C LTR ERV1 1 189 -365 313 132 19 0 chr4 93937158 93937211 -90351451 + MER92C LTR ERV1 500 553 -1 3846 65 0 8 chr4 93937430 93937939 -90350723 - L1PA8 LINE L1 -6 6166 5662 21 0 0 0 chr4 93938219 93938240 -90350422 + AT_rich Low_complexity Low_complexity 1 21 0 2147 87 0 14 chr4 93939605 93939930 -90348732 + AluSq SINE Alu 1 321 0 251 200 0 15 chr4 93940120 93940185 -90348477 + GA-rich Low_complexity Low_complexity 2 65 0 339 306 0 27 chr4 93941308 93941419 -90347243 + MLT1E LTR MaLR 1 92 -501 620 289 103 0 chr4 93941419 93941623 -90347039 - L2 LINE L2 -1848 1466 1242 1273 158 40 6 chr4 93941689 93942122 -90346540 - LTR54 LTR ERV1 0 510 3 3103 216 159 18 chr4 93942122 93942348 -90346314 + L1MB2 LINE L1 5005 5198 -973 186 71 0 0 chr4 93942348 93942376 -90346286 + (CAA)n Simple_repeat Simple_repeat 1 28 0 3103 216 159 18 chr4 93942376 93943175 -90345487 + L1MB2 LINE L1 5198 6169 -2 344 303 45 0 chr4 93943175 93943264 -90345398 - L2 LINE L2 -2063 1251 1159 188 377 59 18 chr4 93943387 93943607 -90345055 - L2 LINE L2 -222 3050 2822 498 255 40 21 chr4 93943797 93944005 -90344657 + MIR3 SINE MIR 44 256 -6 284 247 14 14 chr4 93944730 93944803 -90343859 - MER94 DNA DNA -61 73 1 1362 252 19 13 chr4 93944835 93945152 -90343510 - MER77 LTR ERV1 0 605 287 395 154 0 0 chr4 93945160 93945225 -90343437 - MER77 LTR ERV1 -538 67 3 195 308 13 51 chr4 93945333 93945411 -90343251 - MIR SINE MIR -22 240 166 204 239 0 0 chr4 93945448 93945494 -90343168 + T-rich Low_complexity Low_complexity 4 49 0 406 270 87 0 chr4 93945772 93945898 -90342764 + L1MEd LINE L1 11 147 -5972 1108 303 77 20 chr4 93945988 93946480 -90342182 + L1MEd LINE L1 304 823 -5296 1320 239 23 29 chr4 93947328 93947671 -90340991 + MER58B DNA MER1_type 1 341 0 408 326 64 4 chr4 93948054 93948287 -90340375 - MLT1L LTR MaLR -149 466 220 278 335 76 15 chr4 93948820 93949017 -90339645 + MIR SINE MIR 8 216 -46 283 247 0 79 chr4 93949279 93949368 -90339294 - L2 LINE L2 0 3313 3232 216 345 59 25 chr4 93949781 93949900 -90338762 + L3 LINE CR1 1443 1565 -12 204 67 0 0 chr4 93950956 93950986 -90337676 + (T)n Simple_repeat Simple_repeat 1 30 0 1424 170 42 10 chr4 93951363 93951651 -90337011 + MER44D DNA MER2_type 1 567 -42 225 384 71 0 chr4 93952596 93952708 -90335954 - L2 LINE L2 -4 3268 3149 30 0 0 0 chr4 93953669 93953699 -90334963 + AT_rich Low_complexity Low_complexity 1 30 0 1020 238 61 21 chr4 93953896 93954224 -90334438 + MER110 LTR ERV1 151 491 0 2191 117 3 0 chr4 93954327 93954626 -90334036 - AluSx SINE Alu -12 300 1 23 0 0 0 chr4 93955098 93955121 -90333541 + AT_rich Low_complexity Low_complexity 1 23 0 1210 191 9 0 chr4 93956225 93956440 -90332222 - MER1B DNA MER1_type -80 217 1 22 56 0 0 chr4 93956778 93956814 -90331848 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr4 93956879 93956909 -90331753 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 93957270 93957292 -90331370 + AT_rich Low_complexity Low_complexity 1 22 0 6660 53 4 43 chr4 93958392 93959538 -90329124 + L1PA7 LINE L1 5032 6141 -13 22 0 0 0 chr4 93960888 93960910 -90327752 + AT_rich Low_complexity Low_complexity 1 22 0 1190 190 18 18 chr4 93961558 93961779 -90326883 + MER46A DNA MER2_type 2 222 -14 314 286 36 18 chr4 93962022 93962134 -90326528 + MER5A DNA MER1_type 16 129 -60 181 357 98 0 chr4 93962822 93962934 -90325728 + MIR SINE MIR 47 169 -93 25 31 0 0 chr4 93964651 93964683 -90323979 + AT_rich Low_complexity Low_complexity 1 32 0 2117 73 0 54 chr4 93965455 93965771 -90322891 - AluY SINE Alu -12 299 1 752 224 36 0 chr4 93965967 93966132 -90322530 + L1PA16 LINE L1 5973 6143 -23 830 321 77 24 chr4 93966157 93966280 -90322382 - L1M4 LINE L1 -1088 5058 4943 1701 166 70 17 chr4 93966280 93966636 -90322026 - THE1C LTR MaLR 0 375 1 830 321 77 24 chr4 93966636 93967447 -90321215 - L1M4 LINE L1 -1203 4943 4074 731 288 135 57 chr4 93968022 93968657 -90320005 + HAL1 LINE L1 861 1545 -962 303 293 60 35 chr4 93968722 93968838 -90319824 + HAL1 LINE L1 1814 1932 -575 1256 119 82 26 chr4 93968855 93969123 -90319539 + L1MB3 LINE L1 5894 6176 -7 24 32 0 0 chr4 93969690 93969721 -90318941 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr4 93969928 93969963 -90318699 + AT_rich Low_complexity Low_complexity 1 35 0 10036 44 0 0 chr4 93970492 93972552 -90316110 + L1PA3 LINE L1 4115 6152 -3 22 0 0 0 chr4 93972552 93972574 -90316088 + AT_rich Low_complexity Low_complexity 1 22 0 2563 191 70 10 chr4 93972574 93972697 -90315965 + L1MA9 LINE L1 5652 5766 -546 441 0 0 0 chr4 93972697 93972746 -90315916 + (TG)n Simple_repeat Simple_repeat 2 50 0 2563 191 70 10 chr4 93972746 93973210 -90315452 + L1MA9 LINE L1 5766 6274 -38 21 71 0 0 chr4 93974404 93974446 -90314216 + AT_rich Low_complexity Low_complexity 1 42 0 28 29 0 0 chr4 93974652 93974687 -90313975 + AT_rich Low_complexity Low_complexity 1 35 0 1118 129 6 6 chr4 93974723 93974901 -90313761 - Tigger7 DNA MER2_type -3 2584 2407 388 227 156 14 chr4 93975684 93975825 -90312837 + MER103 DNA DNA 3 163 -3 21 0 0 0 chr4 93975870 93975891 -90312771 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 93975934 93975956 -90312706 + AT_rich Low_complexity Low_complexity 1 22 0 204 158 0 0 chr4 93976984 93977022 -90311640 + (TG)n Simple_repeat Simple_repeat 1 38 0 * 378 204 0 0 chr4 93977021 93977124 -90311538 + GA-rich Low_complexity Low_complexity 1 103 0 360 0 0 0 chr4 93977170 93977210 -90311452 + (TC)n Simple_repeat Simple_repeat 1 40 0 388 106 0 181 chr4 93977419 93977513 -90311149 - MADE1 DNA Mariner -3 77 1 916 162 22 5 chr4 93977924 93978109 -90310553 - L1 LINE L1 -1720 4426 4239 * 2885 230 44 24 chr4 93978091 93978110 -90310552 - L1PA13 LINE L1 -4555 2232 2215 3660 142 8 2 chr4 93978110 93978709 -90309953 - L1PA16 LINE L1 -2 6164 5562 2885 230 44 24 chr4 93978709 93979574 -90309088 - L1PA13 LINE L1 -4572 2215 1394 244 304 13 13 chr4 93979866 93979945 -90308717 - L1PA13 LINE L1 -5400 1394 1316 * 253 269 13 13 chr4 93979922 93980000 -90308662 - L1PA13 LINE L1 -5276 1511 1434 564 291 35 48 chr4 93980073 93980389 -90308273 - L1PA13 LINE L1 -6175 612 301 959 211 4 13 chr4 93980390 93980622 -90308040 - L1 LINE L1 -1086 5060 4831 5101 151 19 18 chr4 93980639 93981704 -90306958 + L1PB3 LINE L1 5096 6152 -2 1045 306 10 19 chr4 93981715 93982029 -90306633 - L1PA13 LINE L1 -6475 312 2 1976 173 4 92 chr4 93982032 93982378 -90306284 - L1 LINE L1 -1907 4239 3945 1690 104 4 4 chr4 93982378 93982628 -90306034 - L1PA13 LINE L1 -5 6158 5909 1976 173 4 92 chr4 93982628 93982760 -90305902 - L1 LINE L1 -2201 3945 3803 586 249 0 58 chr4 93982781 93982902 -90305760 + L1M2 LINE L1 5052 5158 -988 2215 92 0 3 chr4 93982902 93983197 -90305465 + AluY SINE Alu 1 294 -17 586 249 0 58 chr4 93983197 93983280 -90305382 + L1M2 LINE L1 5158 5244 -902 260 224 10 0 chr4 93983291 93983389 -90305273 + (TA)n Simple_repeat Simple_repeat 2 100 0 1369 174 12 0 chr4 93983393 93983635 -90305027 + L1PB3 LINE L1 5874 6118 -36 304 244 93 0 chr4 93983654 93983740 -90304922 - L1MC4 LINE L1 -1335 6707 6614 326 320 20 0 chr4 93983740 93983893 -90304769 + (TA)n Simple_repeat Simple_repeat 2 157 0 2456 146 12 0 chr4 93983916 93984326 -90304336 + L1M2 LINE L1 5254 5668 -644 43341 43 1 4 chr4 93984335 93990501 -90298161 + L1PA3 LINE L1 6 6152 -3 30 0 0 0 chr4 93990517 93990547 -90298115 + AT_rich Low_complexity Low_complexity 1 30 0 460 301 96 75 chr4 93991231 93991607 -90297055 - MLT1J LTR MaLR -9 502 119 21 0 0 0 chr4 93992316 93992337 -90296325 + AT_rich Low_complexity Low_complexity 1 21 0 522 335 16 16 chr4 93992342 93992536 -90296126 - MIR3 SINE MIR -12 196 3 381 93 0 0 chr4 93992538 93992592 -90296070 + (TTCC)n Simple_repeat Simple_repeat 1 54 0 292 109 18 67 chr4 93993002 93993167 -90295495 + (TA)n Simple_repeat Simple_repeat 1 157 0 300 202 24 48 chr4 93993173 93993257 -90295405 - L1MC4 LINE L1 -1340 6702 6621 204 182 0 0 chr4 93993426 93993470 -90295192 + (CA)n Simple_repeat Simple_repeat 1 44 0 285 263 127 8 chr4 93993514 93993632 -90295030 - ERVL LTR ERVL -2629 3135 3004 213 367 0 75 chr4 93993772 93993827 -90294835 - MIR3 SINE MIR -3 205 147 2233 98 3 0 chr4 93993827 93994123 -90294539 + AluSp SINE Alu 1 297 -16 213 367 0 75 chr4 93994123 93994255 -90294407 - MIR3 SINE MIR -61 147 32 21 71 0 0 chr4 93995654 93995696 -90292966 + AT_rich Low_complexity Low_complexity 1 42 0 2341 99 0 13 chr4 93996654 93996966 -90291696 + AluSp SINE Alu 3 310 -3 311 312 0 0 chr4 93997104 93997181 -90291481 + (CAG)n Simple_repeat Simple_repeat 2 78 0 443 331 12 25 chr4 93997310 93997470 -90291192 - MIR SINE MIR -79 183 26 186 273 0 0 chr4 93997470 93997514 -90291148 + L2 LINE L2 3268 3311 -2 22 56 0 0 chr4 93999048 93999084 -90289578 + AT_rich Low_complexity Low_complexity 1 36 0 2756 10 3 0 chr4 93999306 93999614 -90289048 - AluYb8 SINE Alu -9 309 1 394 132 26 0 chr4 94000427 94000503 -90288159 + CT-rich Low_complexity Low_complexity 3 80 0 281 369 129 13 chr4 94000612 94000845 -90287817 + L2 LINE L2 2598 2857 -457 316 274 116 33 chr4 94001029 94001270 -90287392 - L1ME3 LINE L1 -239 5923 5663 260 363 10 0 chr4 94001901 94002003 -90286659 - MER5A DNA MER1_type -2 187 85 336 227 0 0 chr4 94002112 94002200 -90286462 + (TGG)n Simple_repeat Simple_repeat 1 88 0 441 306 208 7 chr4 94002261 94002470 -90286192 + MIR SINE MIR 14 261 -1 7807 187 115 16 chr4 94002802 94004398 -90284264 + MER52A LTR ERV1 1 1755 0 193 200 100 57 chr4 94004669 94004739 -90283923 + MIR SINE MIR 96 168 -94 713 289 29 20 chr4 94004775 94005021 -90283641 + MIR SINE MIR 2 249 -13 22 35 0 0 chr4 94005763 94005792 -90282870 + AT_rich Low_complexity Low_complexity 1 29 0 246 333 42 0 chr4 94005895 94006015 -90282647 - MIR SINE MIR 0 262 138 23 0 0 0 chr4 94006164 94006187 -90282475 + AT_rich Low_complexity Low_complexity 1 23 0 3425 181 124 6 chr4 94006187 94007101 -90281561 - L1PA13 LINE L1 -7 6156 5132 469 136 0 0 chr4 94007107 94007188 -90281474 + L1 LINE L1 4265 4345 -1801 330 271 66 16 chr4 94007729 94007851 -90280811 - MIR SINE MIR -75 187 60 711 287 10 5 chr4 94008275 94008470 -90280192 + MIR SINE MIR 57 252 -10 2430 63 7 0 chr4 94008827 94009130 -90279532 + AluY SINE Alu 1 305 -6 580 199 38 0 chr4 94009988 94010119 -90278543 - Charlie1 DNA MER1_type -16 2745 2610 1164 205 91 17 chr4 94011570 94011868 -90276794 - Zaphod DNA AcHobo 0 4031 3712 491 117 19 10 chr4 94011995 94012098 -90276564 - Zaphod DNA AcHobo -331 3700 3597 3089 232 63 28 chr4 94012111 94013056 -90275606 - Zaphod DNA AcHobo -3051 980 2 404 274 114 8 chr4 94014026 94014271 -90274391 - L1ME4a LINE L1 -53 6068 5798 499 282 49 75 chr4 94014386 94014652 -90274010 - L2 LINE L2 -4 3309 3051 303 314 89 0 chr4 94014652 94014776 -90273886 - L1ME4a LINE L1 -483 5638 5504 22 0 0 0 chr4 94014788 94014810 -90273852 + AT_rich Low_complexity Low_complexity 1 22 0 958 320 61 11 chr4 94014994 94015372 -90273290 + LTR16C LTR ERVL 76 472 -19 180 111 0 0 chr4 94015773 94015800 -90272862 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 472 56 28 0 chr4 94016103 94016175 -90272487 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 4762 122 61 5 chr4 94018205 94018943 -90269719 + MER4E LTR ERV1 1 779 0 3636 128 6 2 chr4 94018963 94019487 -90269175 + MER1A DNA MER1_type 2 527 0 221 83 28 0 chr4 94020615 94020651 -90268011 + (CCTA)n Simple_repeat Simple_repeat 3 39 0 268 214 0 18 chr4 94020679 94020735 -90267927 + L2 LINE L2 3257 3311 -2 233 245 0 0 chr4 94023961 94024014 -90264648 - L2 LINE L2 -3 3310 3258 250 261 0 0 chr4 94024787 94024856 -90263806 - HsTC2b DNA Tc2 -30 888 820 235 308 231 11 chr4 94024850 94025032 -90263630 - HsTC2b DNA Tc2 -693 222 1 * 1279 196 52 70 chr4 94025472 94025909 -90262753 + MLT2B1 LTR ERVL 1 413 -1 26 0 0 0 chr4 94026242 94026268 -90262394 + AT_rich Low_complexity Low_complexity 1 26 0 262 274 107 30 chr4 94026619 94026853 -90261809 + L1M4 LINE L1 4183 4434 -1712 239 220 20 0 chr4 94026907 94026957 -90261705 + GA-rich Low_complexity Low_complexity 1 51 0 295 346 135 0 chr4 94027201 94027357 -90261305 - L2 LINE L2 -217 3055 2879 28 0 0 0 chr4 94027450 94027478 -90261184 + AT_rich Low_complexity Low_complexity 1 28 0 293 298 9 44 chr4 94027890 94028004 -90260658 - MLT1J1 LTR MaLR -307 143 34 1760 124 14 22 chr4 94028005 94028280 -90260382 + AluSg SINE Alu 1 273 -37 840 266 143 0 chr4 94028443 94028695 -90259967 - MLT1B LTR MaLR -3 387 100 4194 107 20 2 chr4 94028695 94029684 -90258978 + L1PA10 LINE L1 4854 5861 -307 12346 54 80 5 chr4 94030153 94031859 -90256803 + L1P LINE L1 1 1834 -4312 272 230 40 40 chr4 94032291 94032365 -90256297 - L2 LINE L2 -1 3312 3239 305 268 154 32 chr4 94033413 94033536 -90255126 - MIR SINE MIR -118 144 7 249 242 192 50 chr4 94034645 94034765 -90253897 - MIR3 SINE MIR -25 183 47 231 200 22 0 chr4 94037556 94037601 -90251061 + L2 LINE L2 3227 3272 0 186 250 83 0 chr4 94037678 94037738 -90250924 - L2 LINE L2 0 3313 3249 183 42 0 0 chr4 94038492 94038516 -90250146 + (TTTTTA)n Simple_repeat Simple_repeat 6 29 0 732 294 82 10 chr4 94039328 94039693 -90248969 - L1M4 LINE L1 -1747 4399 4005 28 29 0 0 chr4 94039968 94040003 -90248659 + AT_rich Low_complexity Low_complexity 1 35 0 305 159 0 14 chr4 94040812 94040881 -90247781 + (TTA)n Simple_repeat Simple_repeat 3 70 0 18885 46 0 0 chr4 94041196 94044328 -90244334 - L1PA3 LINE L1 0 6155 3018 237 225 14 14 chr4 94044494 94044565 -90244097 + (CGGG)n Simple_repeat Simple_repeat 4 74 0 1733 120 18 7 chr4 94044709 94044983 -90243679 + L1PA10 LINE L1 5880 6156 -12 13449 202 29 7 chr4 94045002 94048139 -90240523 - L1P4 LINE L1 -642 5519 2324 269 390 125 0 chr4 94048356 94048492 -90240170 - L2 LINE L2 -4 3268 3116 2431 77 0 3 chr4 94048498 94048809 -90239853 + AluY SINE Alu 1 310 -1 249 139 0 0 chr4 94049354 94049397 -90239265 + (CA)n Simple_repeat Simple_repeat 2 44 0 685 270 133 36 chr4 94050136 94050609 -90238053 - MLT1G1 LTR MaLR -8 534 5 292 237 0 17 chr4 94051397 94051456 -90237206 - L2 LINE L2 -52 3261 3204 213 39 0 0 chr4 94051471 94051497 -90237165 + (CA)n Simple_repeat Simple_repeat 2 27 0 531 69 0 0 chr4 94052520 94052592 -90236070 + (TA)n Simple_repeat Simple_repeat 2 73 0 1952 132 11 4 chr4 94052592 94052873 -90235789 - AluSx SINE Alu -18 294 12 503 232 0 0 chr4 94053081 94053176 -90235486 + FLAM_A SINE Alu 28 122 -20 7942 124 30 13 chr4 94053289 94054567 -90234095 + HSMAR2 DNA Mariner 2 1300 -2 1342 204 107 62 chr4 94054692 94055100 -90233562 + L1MC3 LINE L1 6715 7146 -639 471 78 0 0 chr4 94055100 94055164 -90233498 + (CA)n Simple_repeat Simple_repeat 2 65 0 1342 204 107 62 chr4 94055164 94055205 -90233457 + L1MC3 LINE L1 7146 7184 -601 2204 176 57 21 chr4 94055205 94055682 -90232980 + L1MD3 LINE L1 7500 7993 -2 36 23 0 0 chr4 94055710 94055753 -90232909 + AT_rich Low_complexity Low_complexity 1 43 0 544 311 72 9 chr4 94055911 94056133 -90232529 + MLT1J2 LTR MaLR 1 236 -214 421 291 165 39 chr4 94056465 94056980 -90231682 - L1M4 LINE L1 -757 5389 4810 22 0 0 0 chr4 94057609 94057631 -90231031 + AT_rich Low_complexity Low_complexity 1 22 0 312 271 26 103 chr4 94057804 94057959 -90230703 + L2 LINE L2 3122 3264 -8 22 35 0 0 chr4 94058105 94058134 -90230528 + AT_rich Low_complexity Low_complexity 1 29 0 197 65 32 0 chr4 94059174 94059205 -90229457 + (CATATA)n Simple_repeat Simple_repeat 2 33 0 328 344 136 24 chr4 94060753 94061084 -90227578 - L1M2 LINE L1 -5612 1237 870 189 107 0 0 chr4 94062647 94062675 -90225987 + (GA)n Simple_repeat Simple_repeat 2 29 0 24 53 0 0 chr4 94064353 94064391 -90224271 + AT_rich Low_complexity Low_complexity 1 38 0 4693 165 23 30 chr4 94065929 94066960 -90221702 - L1MB2 LINE L1 -2 6169 5145 500 333 6 45 chr4 94067216 94067552 -90221110 + L1 LINE L1 3871 4193 -1953 448 272 174 25 chr4 94067718 94068236 -90220426 + L1 LINE L1 4182 4776 -1370 289 172 0 16 chr4 94068311 94068375 -90220287 + L1 LINE L1 4960 5022 -1124 4108 59 0 0 chr4 94068558 94069080 -90219582 - L1P LINE L1 -1784 4362 3841 5691 41 4 4 chr4 94069619 94070328 -90218334 - L1PA3 LINE L1 0 6155 5447 199 289 51 58 chr4 94070525 94070681 -90217981 - L2 LINE L2 -124 3189 3035 2549 48 0 7 chr4 94071137 94071447 -90217215 + AluY SINE Alu 1 308 -3 27 0 0 0 chr4 94071714 94071741 -90216921 + AT_rich Low_complexity Low_complexity 1 27 0 808 250 120 11 chr4 94071791 94072075 -90216587 - L1MC4 LINE L1 -172 7870 7556 1178 184 131 68 chr4 94073196 94073533 -90215129 - MER93b LTR ERV1 0 373 16 32 26 0 0 chr4 94074189 94074228 -90214434 + AT_rich Low_complexity Low_complexity 1 39 0 535 302 64 0 chr4 94074329 94074501 -90214161 + MER97a DNA MER1_type? 9 191 -703 1606 171 70 17 chr4 94074638 94074982 -90213680 - L1MC1 LINE L1 -6 6327 5966 7773 78 8 11 chr4 94075017 94076078 -90212584 - MER11C LTR ERVK -14 1057 1 1692 116 27 67 chr4 94076078 94076406 -90212256 - L1MC1 LINE L1 -358 5975 5661 * 2408 188 45 4 chr4 94076398 94076862 -90211800 - L1MCa LINE L1 -5901 525 43 810 184 23 52 chr4 94077638 94077812 -90210850 + Tigger7 DNA MER2_type 1 169 -381 1114 288 51 13 chr4 94077916 94078308 -90210354 - LTR16A LTR ERVL -37 413 7 9350 94 8 0 chr4 94078624 94081257 -90207405 - L1PA7 LINE L1 -3 6151 3332 184 29 29 29 chr4 94081304 94081338 -90207324 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7166 52 1 0 chr4 94081928 94083335 -90205327 + L1PA5 LINE L1 4740 6148 -6 25 31 0 0 chr4 94083465 94083497 -90205165 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr4 94084093 94084116 -90204546 + AT_rich Low_complexity Low_complexity 1 23 0 5790 123 16 2 chr4 94084374 94085727 -90202935 - L1PA14 LINE L1 -10 6151 4784 31 0 0 0 chr4 94085997 94086028 -90202634 + AT_rich Low_complexity Low_complexity 1 31 0 1830 155 49 30 chr4 94086123 94086490 -90202172 + MLT1C LTR MaLR 94 467 0 34 55 0 0 chr4 94086770 94086825 -90201837 + AT_rich Low_complexity Low_complexity 1 55 0 4085 216 24 13 chr4 94086922 94087968 -90200694 + L1MB5 LINE L1 4275 5331 -815 912 337 56 45 chr4 94088049 94089014 -90199648 - LTR57-int LTR ERVL -2345 2998 2023 2394 174 2 28 chr4 94089621 94090087 -90198575 + L1MB5 LINE L1 5685 6138 -36 219 154 0 0 chr4 94090171 94090210 -90198452 + A-rich Low_complexity Low_complexity 1 39 0 288 0 0 0 chr4 94092249 94092281 -90196381 + (TAAAA)n Simple_repeat Simple_repeat 1 32 0 2355 189 11 19 chr4 94092489 94092960 -90195702 - MLT1C LTR MaLR 0 467 1 476 322 23 38 chr4 94093733 94093974 -90194688 - MLT1I LTR MaLR -137 272 58 350 148 0 0 chr4 94094387 94094441 -90194221 - MSTB LTR MaLR -372 54 1 757 263 201 10 chr4 94094697 94094986 -90193676 + MLT1J2 LTR MaLR 104 447 -3 2419 111 5 22 chr4 94095561 94095931 -90192731 - THE1B LTR MaLR 0 364 1 2302 109 0 0 chr4 94096013 94096325 -90192337 + AluSx SINE Alu 1 312 0 25 99 0 0 chr4 94096330 94096411 -90192251 + AT_rich Low_complexity Low_complexity 1 81 0 214 192 14 27 chr4 94096491 94096564 -90192098 + CT-rich Low_complexity Low_complexity 3 74 0 1446 147 47 89 chr4 94096827 94096957 -90191705 - L1MA9 LINE L1 -2 6310 6176 2202 102 0 3 chr4 94096957 94097250 -90191412 + AluY SINE Alu 1 292 -19 1446 147 47 89 chr4 94097250 94097479 -90191183 - L1MA9 LINE L1 -136 6176 5966 5258 134 24 6 chr4 94097525 94098430 -90190232 - L1MA8 LINE L1 -102 6189 5271 195 42 0 0 chr4 94098773 94098797 -90189865 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chr4 94099044 94099066 -90189596 + AT_rich Low_complexity Low_complexity 1 22 0 4512 173 51 5 chr4 94099180 94100084 -90188578 - L1MB3 LINE L1 -3 6180 5236 973 227 70 7 chr4 94100084 94100370 -90188292 - L1M4 LINE L1 -830 5316 5013 235 306 0 0 chr4 94100374 94100436 -90188226 + (CATATA)n Simple_repeat Simple_repeat 5 66 0 17311 35 1 0 chr4 94100836 94102951 -90185711 + L1P LINE L1 3217 5333 -813 2230 114 27 163 chr4 94103051 94103578 -90185084 + Tigger7 DNA MER2_type 2032 2486 -1 250 298 99 19 chr4 94104408 94104569 -90184093 + L2 LINE L2 2262 2435 -879 23 86 0 0 chr4 94106728 94106786 -90181876 + AT_rich Low_complexity Low_complexity 1 58 0 284 345 9 26 chr4 94107576 94107692 -90180970 - MIR SINE MIR -138 124 11 316 295 74 88 chr4 94107976 94108164 -90180498 + L1MEd LINE L1 586 768 -5351 1389 216 65 3 chr4 94108164 94108488 -90180174 - MER2 DNA MER2_type 0 344 1 316 295 74 88 chr4 94108488 94108638 -90180024 + L1MEd LINE L1 768 919 -5200 779 272 109 42 chr4 94108646 94109095 -90179567 + L1MCb LINE L1 1 479 -5566 1561 131 45 0 chr4 94109380 94109602 -90179060 + AluSx SINE Alu 38 269 -43 485 133 24 0 chr4 94109701 94109784 -90178878 + MER2 DNA MER2_type 118 202 -143 1400 201 18 7 chr4 94109865 94110144 -90178518 + L1MC3 LINE L1 5585 5866 -1919 851 214 25 61 chr4 94110123 94110300 -90178362 + L1MC3 LINE L1 7508 7673 -112 * 1984 169 0 0 chr4 94110300 94110613 -90178049 + AluSq SINE Alu 1 313 0 851 214 25 61 chr4 94110613 94110715 -90177947 + L1MC3 LINE L1 7673 7777 -8 1127 279 145 32 chr4 94110899 94112155 -90176507 + L1M4 LINE L1 3807 5204 -942 671 91 0 0 chr4 94112258 94112346 -90176316 + MER4E LTR ERV1 679 766 0 703 283 120 52 chr4 94112393 94112760 -90175902 + MLT1K LTR MaLR 194 585 -3 744 240 10 21 chr4 94113092 94113284 -90175378 - MER4C LTR ERV1 0 465 276 1820 137 57 60 chr4 94113308 94113785 -90174877 - MER4A LTR ERV1 -240 424 1 240 283 87 58 chr4 94113798 94113936 -90174726 + MIR SINE MIR 49 190 -72 552 303 67 0 chr4 94113995 94114160 -90174502 + MER5A DNA MER1_type 11 186 -3 595 300 31 27 chr4 94115934 94116157 -90172505 - MIR SINE MIR -6 256 33 405 0 0 0 chr4 94116169 94116214 -90172448 + (TG)n Simple_repeat Simple_repeat 2 46 0 2310 105 0 0 chr4 94116514 94116810 -90171852 - AluSx SINE Alu -16 296 1 12024 104 7 4 chr4 94116851 94118530 -90170132 + L1P3 LINE L1 5 1689 -4772 2287 84 13 10 chr4 94118649 94118959 -90169703 - AluY SINE Alu 0 311 1 1059 232 38 33 chr4 94118965 94119029 -90169633 - L1M4 LINE L1 -840 5306 5244 1749 150 127 60 chr4 94119029 94119430 -90169232 + MSTA LTR MaLR 1 428 0 1059 232 38 33 chr4 94119430 94119586 -90169076 - L1M4 LINE L1 -902 5244 5090 4193 162 22 22 chr4 94119586 94120371 -90168291 - LTR1 LTR ERV1 0 785 1 1059 232 38 33 chr4 94120371 94120593 -90168069 - L1M4 LINE L1 -1056 5090 4730 2778 31 0 0 chr4 94121024 94121341 -90167321 - AluYb8 SINE Alu 0 318 2 27 29 0 0 chr4 94121456 94121490 -90167172 + AT_rich Low_complexity Low_complexity 1 34 0 5864 169 174 97 chr4 94122031 94123661 -90165001 - MER52A LTR ERV1 0 1755 1 342 67 0 0 chr4 94124117 94124162 -90164500 + (TCTCC)n Simple_repeat Simple_repeat 5 49 0 29 28 0 0 chr4 94124592 94124628 -90164034 + AT_rich Low_complexity Low_complexity 1 36 0 418 356 66 61 chr4 94124834 94125275 -90163387 + L2 LINE L2 2829 3271 -1 23 0 0 0 chr4 94125374 94125397 -90163265 + AT_rich Low_complexity Low_complexity 1 23 0 195 250 0 0 chr4 94126192 94126236 -90162426 + L2 LINE L2 3270 3313 0 36 53 0 0 chr4 94126451 94126508 -90162154 + AT_rich Low_complexity Low_complexity 1 57 0 22 88 0 0 chr4 94126581 94126638 -90162024 + AT_rich Low_complexity Low_complexity 1 57 0 1992 123 63 36 chr4 94126817 94127182 -90161480 - THE1C LTR MaLR 0 375 1 8814 144 75 12 chr4 94127182 94128667 -90159995 - THE1C-int LTR MaLR 0 1580 3 1916 145 53 28 chr4 94128670 94129029 -90159633 - THE1C LTR MaLR -7 368 1 1456 181 22 3 chr4 94129864 94130178 -90158484 + MER33 DNA MER1_type 5 324 0 22 35 0 0 chr4 94130388 94130417 -90158245 + AT_rich Low_complexity Low_complexity 1 29 0 2201 86 0 27 chr4 94130512 94130804 -90157858 - AluY SINE Alu -27 284 1 743 297 103 22 chr4 94130826 94131715 -90156947 - L1MDb LINE L1 -4584 2003 1003 25 51 0 0 chr4 94133550 94133589 -90155073 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr4 94135435 94135463 -90153199 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 94135853 94135876 -90152786 + AT_rich Low_complexity Low_complexity 1 23 0 192 152 0 0 chr4 94135933 94135966 -90152696 + (TA)n Simple_repeat Simple_repeat 1 33 0 26 0 0 0 chr4 94136022 94136048 -90152614 + AT_rich Low_complexity Low_complexity 1 26 0 949 159 47 6 chr4 94136702 94136872 -90151790 - MSTB LTR MaLR 0 426 250 7172 100 172 93 chr4 94136872 94138445 -90150217 + pTR5 LTR ERV1 743 2438 0 226 217 0 0 chr4 94138493 94138539 -90150123 - MSTB LTR MaLR -301 131 86 325 292 195 0 chr4 94138664 94138859 -90149803 + L1 LINE L1 4615 4847 -1299 426 132 0 0 chr4 94138882 94138950 -90149712 + L1 LINE L1 4955 5022 -1124 305 349 47 12 chr4 94138959 94139128 -90149534 + L1M4 LINE L1 4881 5055 -1091 304 278 70 79 chr4 94139164 94139405 -90149257 + HAL1 LINE L1 1195 1433 -1074 198 71 0 0 chr4 94139815 94139843 -90148819 + (TG)n Simple_repeat Simple_repeat 1 28 0 194 309 73 36 chr4 94140121 94140231 -90148431 + L2 LINE L2 3199 3312 -1 13790 196 29 28 chr4 94140256 94140656 -90148006 - L1PA15 LINE L1 -7 6809 6411 2375 87 0 3 chr4 94140656 94140967 -90147695 - AluY SINE Alu -1 310 1 13790 196 29 28 chr4 94140967 94144887 -90143775 - L1PA15 LINE L1 -405 6411 2494 6363 34 4 3 chr4 94144899 94145665 -90142997 - L1PA5 LINE L1 0 6154 5388 4877 237 46 31 chr4 94145662 94147970 -90140692 - L1PA15 LINE L1 -4301 2496 1 * 24 85 0 0 chr4 94148325 94148384 -90140278 + AT_rich Low_complexity Low_complexity 1 59 0 31 44 0 0 chr4 94149238 94149283 -90139379 + AT_rich Low_complexity Low_complexity 1 45 0 408 55 0 0 chr4 94149834 94149889 -90138773 + (TG)n Simple_repeat Simple_repeat 2 56 0 2481 151 77 2 chr4 94149889 94150305 -90138357 + LTR47A LTR ERVL 6 452 0 276 329 0 0 chr4 94150417 94150487 -90138175 + MER58A DNA MER1_type 1 70 -37 * 724 186 186 23 chr4 94150484 94150661 -90138001 - Tigger3(Golem) DNA MER2_type -9 3020 2815 608 171 43 7 chr4 94150761 94150901 -90137761 - Tigger3(Golem) DNA MER2_type -188 2841 2697 635 234 8 0 chr4 94150962 94151086 -90137576 + MER58A DNA MER1_type 100 224 0 29 28 0 0 chr4 94151220 94151256 -90137406 + AT_rich Low_complexity Low_complexity 1 36 0 445 316 133 9 chr4 94151565 94151783 -90136879 + MIR SINE MIR 18 262 0 458 330 83 18 chr4 94151797 94152262 -90136400 - L1MC/D LINE L1 -514 5642 5265 748 154 9 0 chr4 94152420 94152530 -90136132 - AluSq/x SINE Alu -194 118 8 3342 240 65 32 chr4 94153651 94155346 -90133316 - L1MDb LINE L1 -4375 2031 328 6112 231 19 13 chr4 94155358 94157009 -90131653 - L1 LINE L1 -2254 3892 2232 22 80 0 0 chr4 94158728 94158778 -90129884 + AT_rich Low_complexity Low_complexity 1 50 0 290 267 67 57 chr4 94159418 94159523 -90129139 + MIR SINE MIR 12 117 -145 566 233 176 0 chr4 94159537 94159713 -90128949 + MER3 DNA MER1_type 3 209 0 279 180 0 0 chr4 94159670 94159720 -90128942 - MER3 DNA MER1_type -119 90 41 * 255 122 0 0 chr4 94160218 94160267 -90128395 + (GA)n Simple_repeat Simple_repeat 1 49 0 24 77 0 0 chr4 94160447 94160499 -90128163 + AT_rich Low_complexity Low_complexity 1 52 0 935 267 19 31 chr4 94162189 94162447 -90126215 - MER21B LTR ERV1 -78 785 531 1208 165 0 14 chr4 94162484 94162696 -90125966 + AluSg/x SINE Alu 104 312 0 8286 198 30 5 chr4 94163039 94165885 -90122777 - L1PA16 LINE L1 -3 6163 3251 1255 227 163 23 chr4 94165958 94166530 -90122132 + MER39 LTR ERV1 4 565 0 470 224 10 10 chr4 94166663 94166761 -90121901 + MLT1D LTR MaLR 1 98 -407 * 1975 81 0 0 chr4 94166746 94167005 -90121657 - PABL_B LTR ERV1 -408 259 1 37 76 0 0 chr4 94167203 94167282 -90121380 + AT_rich Low_complexity Low_complexity 1 79 0 21 0 0 0 chr4 94167900 94167921 -90120741 + AT_rich Low_complexity Low_complexity 1 21 0 2808 141 25 9 chr4 94168919 94169506 -90119156 - MER4E LTR ERV1 0 766 3 41 21 0 0 chr4 94169640 94169688 -90118974 + AT_rich Low_complexity Low_complexity 1 48 0 2270 147 12 37 chr4 94169840 94170247 -90118415 - MER34B LTR ERV1 -49 516 120 615 196 105 7 chr4 94170274 94170417 -90118245 - MER34B LTR ERV1 -408 157 1 3781 242 73 121 chr4 94170488 94171245 -90117417 - L1MC4a LINE L1 -97 7711 6919 3438 151 46 2 chr4 94171245 94171853 -90116809 + MER41B LTR ERV1 1 635 0 3781 242 73 121 chr4 94171853 94173326 -90115336 - L1MC4a LINE L1 -889 6919 5603 231 103 0 0 chr4 94173326 94173365 -90115297 + (TA)n Simple_repeat Simple_repeat 1 39 0 3781 242 73 121 chr4 94173365 94173541 -90115121 - L1MC4a LINE L1 -2205 5603 5420 303 28 0 0 chr4 94173562 94173598 -90115064 + (TG)n Simple_repeat Simple_repeat 2 37 0 3879 35 0 0 chr4 94173745 94174205 -90114457 - L1PA3 LINE L1 -3 6152 5693 42671 52 2 2 chr4 94174206 94180344 -90108318 + L1PA5 LINE L1 9 6147 -7 30 0 0 0 chr4 94180344 94180374 -90108288 + AT_rich Low_complexity Low_complexity 1 30 0 202 303 247 11 chr4 94181041 94181130 -90107532 - MER5A DNA MER1_type -28 161 52 337 280 0 0 chr4 94182281 94182356 -90106306 - MER5A DNA MER1_type -108 81 7 262 287 20 10 chr4 94183301 94183402 -90105260 - L1ME LINE L1 -384 5737 5636 252 330 22 11 chr4 94183420 94183511 -90105151 + L2 LINE L2 1525 1616 -1698 1383 311 78 49 chr4 94184219 94184386 -90104276 + L2 LINE L2 1220 1381 -1933 1766 171 14 7 chr4 94184386 94184679 -90103983 - AluJb SINE Alu -17 295 1 1383 311 78 49 chr4 94184679 94185308 -90103354 + L2 LINE L2 1381 2039 -1275 1484 172 109 7 chr4 94185309 94185612 -90103050 - MLT1A1 LTR MaLR 0 365 32 34 24 0 0 chr4 94186162 94186203 -90102459 + AT_rich Low_complexity Low_complexity 1 41 0 315 159 0 0 chr4 94186243 94186287 -90102375 + Alu SINE Alu 1 44 -258 1945 151 0 3 chr4 94186294 94186592 -90102070 + AluSx SINE Alu 1 297 -15 210 200 0 0 chr4 94186692 94186732 -90101930 - L2 LINE L2 -309 2963 2924 24 32 0 0 chr4 94186941 94186972 -90101690 + AT_rich Low_complexity Low_complexity 1 31 0 3001 82 2 27 chr4 94187691 94188105 -90100557 + MLT2A1 LTR ERVL 1 404 -40 267 103 0 0 chr4 94188107 94188146 -90100516 + (CA)n Simple_repeat Simple_repeat 2 40 0 384 67 47 53 chr4 94188160 94188310 -90100352 + (TA)n Simple_repeat Simple_repeat 2 150 0 445 54 16 92 chr4 94188327 94188511 -90100151 + (TA)n Simple_repeat Simple_repeat 1 170 0 411 56 0 0 chr4 94188516 94188570 -90100092 + MLT2A1 LTR ERVL 400 453 0 39928 81 9 2 chr4 94188570 94193793 -90094869 + HERVL-A1 LTR ERVL 1 5262 -392 3103 134 14 10 chr4 94193796 94194305 -90094357 - MER9 LTR ERVK 0 511 1 2531 126 10 6 chr4 94194308 94195044 -90093618 - HERVK9 LTR ERVK -2 8032 5273 12488 172 70 19 chr4 94195052 94197073 -90091589 - L1P5 LINE L1 -670 6197 4281 2422 85 0 16 chr4 94197073 94197389 -90091273 - AluY SINE Alu 0 311 1 12488 172 70 19 chr4 94197389 94197688 -90090974 - L1P5 LINE L1 -2586 4281 3999 207 48 48 24 chr4 94197688 94197730 -90090932 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 12488 172 70 19 chr4 94197730 94200675 -90087987 - L1P5 LINE L1 -2868 3999 636 1245 135 0 0 chr4 94200694 94200887 -90087775 - L1P5 LINE L1 -6667 196 4 24 0 0 0 chr4 94203065 94203089 -90085573 + AT_rich Low_complexity Low_complexity 1 24 0 1783 91 0 4 chr4 94203299 94203550 -90085112 + AluY SINE Alu 51 300 0 23 0 0 0 chr4 94204123 94204146 -90084516 + AT_rich Low_complexity Low_complexity 1 23 0 2146 113 0 50 chr4 94204276 94204595 -90084067 + AluSx SINE Alu 1 303 -9 2281 42 0 52 chr4 94204666 94204993 -90083669 + AluY SINE Alu 1 311 0 21 0 0 0 chr4 94205062 94205083 -90083579 + AT_rich Low_complexity Low_complexity 1 21 0 567 244 86 117 chr4 94205327 94205790 -90082872 + HAL1 LINE L1 574 1022 -1485 244 268 14 0 chr4 94205919 94205990 -90082672 - MER116 DNA Mariner -8 72 1 4919 202 60 17 chr4 94206046 94208407 -90080255 - L1MC2 LINE L1 0 6344 3878 633 224 7 20 chr4 94208747 94208899 -90079763 + LTR40c LTR ERVL 303 452 -13 384 281 8 47 chr4 94208901 94209029 -90079633 + Charlie8 DNA MER1_type 162 284 -2133 707 316 48 20 chr4 94209079 94209329 -90079333 + MIR SINE MIR 6 262 0 24 32 0 0 chr4 94210447 94210478 -90078184 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr4 94210685 94210720 -90077942 + AT_rich Low_complexity Low_complexity 1 35 0 10494 27 5 2 chr4 94211249 94212840 -90075822 + L1P1 LINE L1 4115 5707 -448 195 256 0 0 chr4 94213830 94213873 -90074789 + L2 LINE L2 3263 3305 -8 1300 255 128 26 chr4 94214884 94215421 -90073241 - MLT1E LTR MaLR 0 593 2 21 0 0 0 chr4 94215535 94215556 -90073106 + AT_rich Low_complexity Low_complexity 1 21 0 2147 96 10 0 chr4 94216547 94216838 -90071824 - AluSc SINE Alu -15 294 1 239 205 0 0 chr4 94218026 94218065 -90070597 + MIR SINE MIR 218 256 -6 2505 164 86 34 chr4 94218341 94218897 -90069765 - MER34C LTR ERV1 0 585 1 794 259 103 8 chr4 94219189 94219620 -90069042 + L1M3d LINE L1 99 581 -5310 23 33 0 0 chr4 94221059 94221089 -90067573 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 94221369 94221391 -90067271 + AT_rich Low_complexity Low_complexity 1 22 0 517 250 77 13 chr4 94221391 94221547 -90067115 - MIR SINE MIR -10 252 87 342 349 48 58 chr4 94221549 94221841 -90066821 - L3 LINE CR1 -509 1068 780 181 365 19 0 chr4 94222052 94222104 -90066558 - MIR SINE MIR -113 95 43 5095 66 38 3 chr4 94222474 94223139 -90065523 + LTR12 LTR ERV1 1 688 0 21 0 0 0 chr4 94223720 94223741 -90064921 + AT_rich Low_complexity Low_complexity 1 21 0 1165 240 108 35 chr4 94223798 94224232 -90064430 - MLT1C LTR MaLR 0 467 2 319 304 67 59 chr4 94224422 94224636 -90064026 - MIR SINE MIR -10 252 39 372 291 34 0 chr4 94225469 94225586 -90063076 - L2 LINE L2 -17 3296 3176 2104 96 4 0 chr4 94225834 94226145 -90062517 - AluSp SINE Alu 0 312 1 217 346 119 33 chr4 94226178 94226504 -90062158 + L2 LINE L2 2410 2797 -517 2450 67 0 0 chr4 94226504 94226801 -90061861 + AluY SINE Alu 1 297 -14 217 346 119 33 chr4 94226801 94226986 -90061676 + L2 LINE L2 2797 2965 -349 185 405 45 0 chr4 94227142 94227231 -90061431 + L2 LINE L2 3147 3239 -33 23 54 0 0 chr4 94227773 94227810 -90060852 + AT_rich Low_complexity Low_complexity 1 37 0 31 0 0 0 chr4 94228310 94228341 -90060321 + AT_rich Low_complexity Low_complexity 1 31 0 208 305 85 0 chr4 94228737 94228796 -90059866 + MER5A DNA MER1_type 43 106 -83 315 293 0 0 chr4 94228872 94228947 -90059715 + MER5A DNA MER1_type 7 81 -108 202 303 247 11 chr4 94230098 94230187 -90058475 + MER5A DNA MER1_type 52 161 -28 30 0 0 0 chr4 94230854 94230884 -90057778 + AT_rich Low_complexity Low_complexity 1 30 0 20316 66 3 2 chr4 94230884 94236945 -90051717 - L1PA5 LINE L1 -7 6147 11 1351 192 61 19 chr4 94237460 94237773 -90050889 - THE1C LTR MaLR -49 326 1 711 314 54 54 chr4 94237814 94237876 -90050786 + L1MEc LINE L1 1095 1156 -5240 663 269 6 18 chr4 94237876 94238043 -90050619 + FAM SINE Alu 3 167 -8 711 314 54 54 chr4 94238043 94238668 -90049994 + L1MEc LINE L1 1155 1782 -4614 2407 253 21 18 chr4 94238723 94239391 -90049271 + L1ME1 LINE L1 5493 6162 -4 821 218 98 19 chr4 94239408 94239674 -90048988 + L1ME2 LINE L1 4806 5092 -1054 1735 238 92 81 chr4 94239702 94240583 -90048079 + L1ME2 LINE L1 5265 6155 -9 21 0 0 0 chr4 94240722 94240743 -90047919 + AT_rich Low_complexity Low_complexity 1 21 0 2283 93 3 0 chr4 94240833 94241134 -90047528 + AluY SINE Alu 1 302 -9 6655 105 16 16 chr4 94242000 94243045 -90045617 - L1MA2 LINE L1 -6 6298 5254 1312 216 90 29 chr4 94243045 94243388 -90045274 - L1M1 LINE L1 -7126 439 76 228 35 0 0 chr4 94243486 94243515 -90045147 + (CA)n Simple_repeat Simple_repeat 2 30 0 536 254 45 108 chr4 94243776 94243984 -90044678 + MLT1J2 LTR MaLR 232 428 -18 218 164 0 36 chr4 94244031 94244086 -90044576 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 12524 90 17 82 chr4 94244201 94245865 -90042797 + L1PA7 LINE L1 3315 4812 -1342 6859 61 7 2 chr4 94245865 94247264 -90041398 + L1PA7 LINE L1 4753 6154 0 12524 90 17 82 chr4 94247264 94247816 -90040846 + L1PA7 LINE L1 4812 5398 -756 665 78 29 7 chr4 94248347 94248473 -90040189 + L1P3 LINE L1 5315 5443 -711 686 306 61 40 chr4 94248474 94248951 -90039711 - L1MEc LINE L1 -5411 985 499 37 39 0 0 chr4 94249047 94249098 -90039564 + AT_rich Low_complexity Low_complexity 1 51 0 219 304 0 43 chr4 94250412 94250481 -90038181 + L2 LINE L2 3230 3295 -18 289 268 126 24 chr4 94250835 94250962 -90037700 - MIR SINE MIR -6 256 117 24 67 0 0 chr4 94252078 94252123 -90036539 + AT_rich Low_complexity Low_complexity 1 45 0 589 256 0 0 chr4 94252310 94252435 -90036227 - FLAM_A SINE Alu -8 125 1 21 36 0 0 chr4 94253330 94253358 -90035304 + AT_rich Low_complexity Low_complexity 1 28 0 757 274 32 5 chr4 94254193 94254383 -90034279 - MIR SINE MIR -53 209 15 279 265 20 20 chr4 94254404 94254502 -90034160 + CT-rich Low_complexity Low_complexity 2 99 0 24 0 0 0 chr4 94255128 94255152 -90033510 + AT_rich Low_complexity Low_complexity 1 24 0 24 67 0 0 chr4 94256591 94256636 -90032026 + AT_rich Low_complexity Low_complexity 1 45 0 186 404 53 9 chr4 94256799 94256913 -90031749 + L2 LINE L2 3133 3251 -21 594 180 36 0 chr4 94256913 94257024 -90031638 - FLAM_A SINE Alu -20 122 8 22 0 0 54 chr4 94257038 94257056 -90031606 + AT_rich Low_complexity Low_complexity 1 18 -17 2073 128 0 0 chr4 94257056 94257344 -90031318 + AluSx SINE Alu 1 288 -24 22 0 0 54 chr4 94257344 94257362 -90031300 + AT_rich Low_complexity Low_complexity 18 35 0 1830 124 0 47 chr4 94257425 94257723 -90030939 - AluSx SINE Alu -28 284 1 23 0 0 0 chr4 94257723 94257746 -90030916 + AT_rich Low_complexity Low_complexity 1 23 0 254 294 0 0 chr4 94258414 94258482 -90030180 + (CATA)n Simple_repeat Simple_repeat 3 70 0 202 401 49 7 chr4 94260120 94260262 -90028400 + L2 LINE L2 1783 1930 -1384 430 320 34 17 chr4 94260433 94260608 -90028054 + MIR SINE MIR 38 215 -47 4371 182 24 26 chr4 94260649 94261484 -90027178 + MER21B LTR ERV1 16 848 -15 410 305 16 0 chr4 94261582 94261710 -90026952 + CT-rich Low_complexity Low_complexity 2 131 0 286 292 32 78 chr4 94261679 94261960 -90026702 + L2 LINE L2 2148 2415 -899 * 199 404 15 44 chr4 94262050 94262320 -90026342 + L2 LINE L2 2596 2857 -457 989 295 39 29 chr4 94262561 94263291 -90025371 - L1MEc LINE L1 -3426 2789 2099 782 206 0 0 chr4 94263297 94263443 -90025219 - FRAM SINE Alu -30 146 1 1359 113 5 21 chr4 94263522 94263716 -90024946 + MER1B DNA MER1_type 149 339 0 522 136 12 0 chr4 94264234 94264315 -90024347 - Charlie3 DNA MER1_type 0 2712 2631 24 0 0 0 chr4 94265518 94265542 -90023120 + AT_rich Low_complexity Low_complexity 1 24 0 532 263 38 77 chr4 94265687 94266078 -90022584 - L1MEc LINE L1 -3183 3032 2657 1483 260 118 60 chr4 94266119 94266772 -90021890 + MER21B LTR ERV1 24 714 -149 586 244 118 68 chr4 94266809 94267096 -90021566 - L1MEc LINE L1 -3578 2637 2366 659 195 41 0 chr4 94267096 94267219 -90021443 - FLAM_A SINE Alu -4 129 2 586 244 118 68 chr4 94267219 94267552 -90021110 - L1MEc LINE L1 -3849 2366 2023 366 280 40 40 chr4 94267716 94267891 -90020771 - L1MEc LINE L1 -4633 1763 1589 243 0 0 0 chr4 94268218 94268245 -90020417 + (T)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr4 94268390 94268411 -90020251 + AT_rich Low_complexity Low_complexity 1 21 0 186 323 95 32 chr4 94269278 94269436 -90019226 + MIR SINE MIR 70 237 -25 309 269 95 89 chr4 94269928 94270319 -90018343 + L1ME4a LINE L1 5576 5968 -153 262 242 32 0 chr4 94270331 94270455 -90018207 + (TA)n Simple_repeat Simple_repeat 2 129 0 359 161 6 18 chr4 94270589 94270697 -90017965 + Alu SINE Alu 2 47 -254 487 234 58 32 chr4 94270905 94271059 -90017603 + MER63A DNA MER1_type 52 209 -1 615 214 44 15 chr4 94271061 94271267 -90017395 + L1MC5 LINE L1 6995 7206 -755 915 269 83 68 chr4 94271357 94272251 -90016411 - HAL1b LINE L1 -414 934 28 1386 162 88 39 chr4 94272497 94272781 -90015881 - AluJb SINE Alu -14 298 1 3116 258 93 80 chr4 94273054 94274852 -90013810 + L2 LINE L2 1502 3313 0 22 0 0 0 chr4 94277200 94277222 -90011440 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr4 94278378 94278401 -90010261 + (TTTTA)n Simple_repeat Simple_repeat 1 23 0 331 214 29 0 chr4 94279358 94279428 -90009234 - MLT1G1 LTR MaLR -504 91 20 274 281 0 12 chr4 94280760 94280842 -90007820 - MLT1G1-int LTR MaLR -1286 85 5 369 253 10 46 chr4 94280845 94280994 -90007668 - MLT1G1 LTR MaLR 0 595 485 697 286 57 8 chr4 94281090 94281369 -90007293 - MLT1G1 LTR MaLR -303 252 3 921 239 61 36 chr4 94281495 94282084 -90006578 - MER67C LTR ERV1 -6 704 5 235 300 114 36 chr4 94282281 94282421 -90006241 + L2 LINE L2 2623 2773 -541 182 350 82 50 chr4 94282473 94282693 -90005969 + L2 LINE L2 2825 3051 -221 232 337 76 54 chr4 94283737 94284013 -90004649 - L2 LINE L2 -1234 2080 1799 654 285 38 62 chr4 94284158 94284498 -90004164 - LTR68 LTR ERV1 -1 739 408 242 244 139 9 chr4 94284762 94284877 -90003785 + LTR40c LTR ERVL 274 403 -62 199 155 0 52 chr4 94284879 94284911 -90003751 + (TCTA)n Simple_repeat Simple_repeat 3 32 -25 2221 128 16 25 chr4 94284911 94285278 -90003384 - THE1B LTR MaLR 0 364 1 199 155 0 52 chr4 94285278 94285303 -90003359 + (TCTA)n Simple_repeat Simple_repeat 32 57 0 263 149 0 21 chr4 94285309 94285356 -90003306 + LTR40b LTR ERVL 416 461 -1 524 302 69 8 chr4 94285363 94285599 -90003063 + MLT1J1 LTR MaLR 59 308 -138 559 250 203 0 chr4 94285732 94285924 -90002738 + MIR SINE MIR 6 236 -26 26 30 0 0 chr4 94286273 94286306 -90002356 + AT_rich Low_complexity Low_complexity 1 33 0 466 218 78 7 chr4 94286528 94286670 -90001992 - MER104 DNA Tc2 0 180 29 25 31 0 0 chr4 94286781 94286813 -90001849 + AT_rich Low_complexity Low_complexity 1 32 0 380 276 109 6 chr4 94286851 94287007 -90001655 - L1ME1 LINE L1 -114 6050 5876 14397 194 32 8 chr4 94287017 94287313 -90001349 - L1PA15 LINE L1 -71 6810 6523 336 24 0 0 chr4 94287313 94287354 -90001308 + (TG)n Simple_repeat Simple_repeat 2 42 0 14397 194 32 8 chr4 94287354 94291907 -89996755 - L1PA15 LINE L1 -358 6523 1863 3670 274 75 12 chr4 94291917 94293532 -89995130 + L1M4 LINE L1 3688 5403 -743 27684 103 9 7 chr4 94293640 94295002 -89993660 + L1PA7 LINE L1 978 2335 -3811 302 0 26 0 chr4 94295002 94295040 -89993622 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 27684 103 9 7 chr4 94295040 94297824 -89990838 + L1PA7 LINE L1 2335 5135 -1011 6511 75 25 1 chr4 94297825 94298768 -89989894 + L1PA7 LINE L1 5191 6154 0 830 240 87 68 chr4 94298942 94299425 -89989237 - L1M4 LINE L1 -2457 3689 3198 479 324 27 5 chr4 94299565 94299750 -89988912 - L1MEc LINE L1 -6174 222 34 183 42 0 0 chr4 94300290 94300314 -89988348 + (TG)n Simple_repeat Simple_repeat 2 25 0 25 31 0 0 chr4 94300369 94300401 -89988261 + AT_rich Low_complexity Low_complexity 1 32 0 423 0 0 0 chr4 94300533 94300580 -89988082 + (CA)n Simple_repeat Simple_repeat 2 48 0 2315 72 0 44 chr4 94301664 94301984 -89986678 + AluY SINE Alu 1 306 -5 314 283 9 66 chr4 94302425 94302531 -89986131 + L2 LINE L2 2221 2320 -994 688 342 93 27 chr4 94302642 94303341 -89985321 + L1M4 LINE L1 3848 4592 -1554 931 324 62 20 chr4 94303355 94303850 -89984812 - L2 LINE L2 0 3313 2800 283 118 66 0 chr4 94303926 94304002 -89984660 + (TA)n Simple_repeat Simple_repeat 2 82 0 400 271 140 31 chr4 94304178 94304407 -89984255 - L1MCc LINE L1 -4974 1449 1196 20917 122 9 8 chr4 94305198 94309415 -89979247 - L1PA10 LINE L1 -4 6164 1949 749 244 68 24 chr4 94311317 94311522 -89977140 - MIR SINE MIR -5 257 44 367 296 33 13 chr4 94311723 94311875 -89976787 - MER103 DNA DNA -2 164 10 486 363 19 14 chr4 94312521 94312736 -89975926 + MIR SINE MIR 13 228 -34 2028 131 7 0 chr4 94312812 94313117 -89975545 + AluSx SINE Alu 1 307 -5 927 159 13 0 chr4 94313119 94313270 -89975392 - MER5A DNA MER1_type -36 153 1 294 344 60 13 chr4 94315217 94315368 -89973294 - MER5B DNA MER1_type 0 178 21 1138 234 67 13 chr4 94315370 94315686 -89972976 - MLT1C LTR MaLR 0 467 135 1206 253 96 71 chr4 94315823 94316345 -89972317 - MLT1F LTR MaLR -7 535 1 493 272 218 0 chr4 94316397 94316544 -89972118 + MER5A DNA MER1_type 10 188 -1 306 195 103 46 chr4 94316573 94316660 -89972002 - MARNA DNA Mariner -83 503 412 567 284 63 29 chr4 94316962 94317081 -89971581 + L1MCc LINE L1 1127 1241 -5331 1752 155 158 13 chr4 94317081 94317455 -89971207 + MSTA LTR MaLR 1 428 0 567 284 63 29 chr4 94317455 94317885 -89970777 + L1MCc LINE L1 1241 1685 -4887 815 276 58 3 chr4 94317888 94318182 -89970480 + L1M4 LINE L1 3715 4024 -2122 * 1044 281 53 8 chr4 94318170 94318569 -89970093 + L1M4 LINE L1 3690 4106 -2040 245 200 109 0 chr4 94318747 94318802 -89969860 - L2 LINE L2 0 3313 3253 446 348 56 30 chr4 94319443 94319713 -89968949 - L2 LINE L2 -556 2758 2482 381 228 124 23 chr4 94320428 94320594 -89968068 - L2 LINE L2 -318 2995 2824 876 251 156 48 chr4 94320632 94321095 -89967567 + MLT1G1 LTR MaLR 75 587 -8 439 272 215 11 chr4 94321126 94321391 -89967271 - L2 LINE L2 -508 2806 2488 402 73 0 0 chr4 94321780 94321835 -89966827 - MLT2A1 LTR ERVL 0 444 390 193 146 42 0 chr4 94321835 94321883 -89966779 + (TA)n Simple_repeat Simple_repeat 1 50 0 1186 92 0 18 chr4 94321921 94322085 -89966577 - MLT2A1 LTR ERVL -46 398 238 35448 73 14 2 chr4 94322085 94326659 -89962003 - HERVL-A1 LTR ERVL -1024 4630 2 926 88 0 88 chr4 94326662 94326822 -89961840 - MLT2A1 LTR ERVL 0 444 299 684 63 0 0 chr4 94326923 94327018 -89961644 - MLT2A1 LTR ERVL -349 95 1 23 0 0 0 chr4 94327075 94327098 -89961564 + AT_rich Low_complexity Low_complexity 1 23 0 191 309 95 0 chr4 94328097 94328181 -89960481 + MIR SINE MIR 51 142 -66 207 167 0 0 chr4 94328869 94328905 -89959757 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 192 222 0 0 chr4 94328907 94328952 -89959710 - L2 LINE L2 0 3313 3269 320 310 0 0 chr4 94329051 94329122 -89959540 - L2 LINE L2 -232 3081 3011 334 260 55 39 chr4 94329126 94329253 -89959409 + MIR SINE MIR 133 261 -1 * 558 248 23 52 chr4 94329249 94329446 -89959216 - MIR SINE MIR -57 205 17 182 197 33 0 chr4 94329482 94329543 -89959119 + (TCCA)n Simple_repeat Simple_repeat 3 65 0 1870 182 34 51 chr4 94329559 94329804 -89958858 - MLT2D LTR ERVL 0 414 177 1565 238 46 0 chr4 94329804 94330153 -89958509 + MLT1A1 LTR MaLR 1 365 0 1870 182 34 51 chr4 94330153 94330319 -89958343 - MLT2D LTR ERVL -237 177 10 634 106 28 28 chr4 94330324 94330466 -89958196 + CT-rich Low_complexity Low_complexity 4 145 0 586 208 25 8 chr4 94331368 94331488 -89957174 + FLAM_A SINE Alu 1 122 -11 29 28 0 0 chr4 94331503 94331539 -89957123 + AT_rich Low_complexity Low_complexity 1 36 0 353 346 53 57 chr4 94332297 94332768 -89955894 + L2 LINE L2 1891 2359 -955 1761 199 32 3 chr4 94332790 94333137 -89955525 - MLT1A1 LTR MaLR -7 358 2 219 300 64 79 chr4 94333263 94333403 -89955259 + L2 LINE L2 2564 2701 -613 2056 148 77 0 chr4 94333519 94333857 -89954805 + THE1B LTR MaLR 1 364 0 32 67 0 0 chr4 94334105 94334165 -89954497 + AT_rich Low_complexity Low_complexity 1 60 0 2412 115 5 35 chr4 94335042 94335417 -89953245 - THE1B LTR MaLR 0 364 1 515 352 91 122 chr4 94335417 94336091 -89952571 - MER21B LTR ERV1 -204 659 7 3642 198 27 51 chr4 94336426 94336836 -89951826 + L1MB4 LINE L1 4987 5406 -774 1764 199 19 17 chr4 94336836 94337198 -89951464 - MLT1A1 LTR MaLR 0 365 3 3642 198 27 51 chr4 94337198 94337997 -89950665 + L1MB4 LINE L1 5406 6167 -13 2296 225 18 64 chr4 94338323 94338977 -89949685 + MLT1E2 LTR MaLR 3 626 0 1980 218 70 44 chr4 94339603 94340177 -89948485 - MLT1E LTR MaLR -2 591 3 409 317 74 30 chr4 94340276 94340478 -89948184 + MIR SINE MIR 11 221 -41 23 86 0 0 chr4 94340722 94340780 -89947882 + AT_rich Low_complexity Low_complexity 1 58 0 641 66 11 0 chr4 94341248 94341339 -89947323 + (TAGA)n Simple_repeat Simple_repeat 4 95 0 200 321 24 12 chr4 94341609 94341693 -89946969 + MIR SINE MIR 63 147 -115 10863 82 2 2 chr4 94341969 94343472 -89945190 + L1P LINE L1 3652 5154 -992 2214 178 34 2 chr4 94343579 94343990 -89944672 - LTR22B LTR ERVK -61 431 8 6820 62 11 1 chr4 94343992 94344952 -89943710 + L1PA7 LINE L1 5183 6151 -3 28 0 0 0 chr4 94345139 94345167 -89943495 + AT_rich Low_complexity Low_complexity 1 28 0 1851 276 107 42 chr4 94346826 94347921 -89940741 - L2 LINE L2 -1 3312 2136 2033 137 17 25 chr4 94348421 94348779 -89939883 + THE1A LTR MaLR 1 355 0 11262 92 15 22 chr4 94348779 94350370 -89938292 + THE1A-int LTR MaLR 1 1580 0 2421 113 8 6 chr4 94350370 94350724 -89937938 + THE1A LTR MaLR 1 355 0 2092 108 31 0 chr4 94351134 94351422 -89937240 - AluSc SINE Alu -10 299 3 629 161 73 40 chr4 94351976 94352100 -89936562 + FLAM_C SINE Alu 4 131 -2 248 238 95 32 chr4 94352663 94352726 -89935936 + L2 LINE L2 3247 3313 0 1321 154 35 0 chr4 94352894 94353121 -89935541 - MER46A DNA MER2_type 0 236 2 3360 167 20 5 chr4 94353202 94353795 -89934867 - MER7C DNA MER2_type 0 602 1 21 0 0 0 chr4 94353990 94354011 -89934651 + AT_rich Low_complexity Low_complexity 1 21 0 203 271 0 0 chr4 94354175 94354223 -89934439 + L2 LINE L2 3265 3312 -1 325 313 106 26 chr4 94354702 94354967 -89933695 - L1ME4a LINE L1 -65 6056 5771 2739 212 10 4 chr4 94355167 94355672 -89932990 + MLT2B1 LTR ERVL 1 508 -12 362 333 107 6 chr4 94355836 94355995 -89932667 - MIR SINE MIR -1 261 87 261 0 0 0 chr4 94357414 94357443 -89931219 + (TG)n Simple_repeat Simple_repeat 2 30 0 1545 277 58 20 chr4 94357502 94358004 -89930658 - MER74B LTR ERVL -18 604 84 1842 160 79 36 chr4 94358162 94358757 -89929905 + MER39 LTR ERV1 6 707 0 410 297 58 7 chr4 94358757 94358895 -89929767 + MIR SINE MIR 89 233 -29 24 32 0 0 chr4 94358911 94358942 -89929720 + AT_rich Low_complexity Low_complexity 1 31 0 1633 265 63 15 chr4 94360127 94360547 -89928115 - L1MEc LINE L1 -3248 2967 2518 2081 92 34 3 chr4 94360547 94360840 -89927822 - AluY SINE Alu -9 302 1 1633 265 63 15 chr4 94360840 94361143 -89927519 - L1MEc LINE L1 -3697 2518 2231 1238 113 0 0 chr4 94361144 94361303 -89927359 - AluSc SINE Alu -32 277 119 923 63 0 0 chr4 94361303 94361414 -89927248 + AluSc SINE Alu 15 125 -184 492 241 148 19 chr4 94361427 94361684 -89926978 - L1MEc LINE L1 -4140 2256 1967 22 35 0 0 chr4 94361756 94361785 -89926877 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 94361870 94361891 -89926771 + AT_rich Low_complexity Low_complexity 1 21 0 1118 289 48 31 chr4 94361928 94362568 -89926094 - L1MEc LINE L1 -4587 1703 1078 1122 108 0 0 chr4 94562571 94562710 -89725952 + AluSg/x SINE Alu 157 295 -17 1839 141 0 28 chr4 94563015 94563299 -89725363 + AluJb SINE Alu 12 287 -25 1584 175 28 21 chr4 94563305 94563631 -89725031 - L1MC1 LINE L1 -11 6322 5995 593 224 20 0 chr4 94564323 94564470 -89724192 - MER103 DNA DNA 0 166 17 266 271 114 57 chr4 94564515 94564655 -89724007 - MIR3 SINE MIR -45 163 16 2226 92 14 0 chr4 94564820 94565115 -89723547 + AluSx SINE Alu 1 299 -13 2381 95 3 0 chr4 94565121 94565426 -89723236 + AluSp SINE Alu 1 306 -7 650 261 22 0 chr4 94565526 94565710 -89722952 + L1PA16 LINE L1 5977 6164 -2 297 327 94 45 chr4 94565828 94566030 -89722632 + L2 LINE L2 3102 3313 0 2034 124 0 7 chr4 94566408 94566729 -89721933 + AluSx SINE Alu 3 321 0 268 293 10 30 chr4 94567014 94567113 -89721549 + MIR3 SINE MIR 111 207 -1 229 279 33 107 chr4 94567911 94568033 -89720629 + MIR SINE MIR 25 137 -71 1957 168 60 19 chr4 94568071 94568487 -89720175 - L1MB8 LINE L1 -5 6173 5741 1475 272 47 83 chr4 94568692 94569003 -89719659 + L2 LINE L2 784 1105 -2209 210 37 0 0 chr4 94569003 94569030 -89719632 + (CAT)n Simple_repeat Simple_repeat 1 27 0 1475 272 47 83 chr4 94569030 94569480 -89719182 + L2 LINE L2 1105 1518 -1796 209 271 0 0 chr4 94569594 94569642 -89719020 + L2 LINE L2 1533 1580 -1734 382 197 86 0 chr4 94569659 94569776 -89718886 + HAL1 LINE L1 2051 2177 -330 338 164 75 0 chr4 94569779 94569846 -89718816 - HAL1 LINE L1 -214 2293 2222 636 122 24 8 chr4 94569979 94570102 -89718560 + A-rich Low_complexity Low_complexity 2 126 0 3011 243 64 29 chr4 94570102 94570957 -89717705 - HERVL40 LTR ERVL -873 4657 3773 548 250 35 0 chr4 94570964 94571108 -89717554 - LTR40a LTR ERVL -351 168 20 234 250 0 0 chr4 94571162 94571234 -89717428 + (TA)n Simple_repeat Simple_repeat 2 73 0 2229 129 3 0 chr4 94571259 94571568 -89717094 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr4 94571576 94571597 -89717065 + AT_rich Low_complexity Low_complexity 1 21 0 1844 217 58 45 chr4 94571618 94572240 -89716422 + L1MC4 LINE L1 7413 8042 0 395 300 79 26 chr4 94572257 94572447 -89716215 + L1MC4a LINE L1 4399 4598 -1548 1013 174 0 6 chr4 94572622 94572638 -89716024 - FRAM SINE Alu -136 166 151 393 22 0 0 chr4 94572638 94572684 -89715978 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 1013 174 0 6 chr4 94572684 94572834 -89715828 - FRAM SINE Alu -151 151 1 660 268 37 16 chr4 94572835 94573078 -89715584 + L1MC4a LINE L1 5616 5863 -1945 24 32 0 0 chr4 94573744 94573775 -89714887 + AT_rich Low_complexity Low_complexity 1 31 0 1904 173 3 0 chr4 94574011 94574306 -89714356 + AluJo SINE Alu 1 296 -16 277 162 29 0 chr4 94574735 94574803 -89713859 + (TA)n Simple_repeat Simple_repeat 1 70 0 396 0 0 0 chr4 94574842 94574886 -89713776 + (TG)n Simple_repeat Simple_repeat 2 45 0 1749 133 0 54 chr4 94575669 94575963 -89712699 - AluSx SINE Alu -34 278 1 586 198 38 0 chr4 94576329 94576435 -89712227 + FLAM_C SINE Alu 4 113 -30 2188 117 0 0 chr4 94576637 94576936 -89711726 + AluSq SINE Alu 1 299 -14 21 57 0 0 chr4 94577375 94577410 -89711252 + AT_rich Low_complexity Low_complexity 1 35 0 528 211 260 20 chr4 94578454 94578658 -89710004 + MER5C DNA MER1_type 1 253 -71 424 182 0 0 chr4 94578672 94578748 -89709914 + AluJ/FLAM SINE Alu 1 69 -233 732 169 0 8 chr4 94578748 94578866 -89709796 + AluJo/FRAM SINE Alu 173 289 -23 760 271 67 0 chr4 94578936 94579161 -89709501 + MIR SINE MIR 22 261 -1 200 245 0 19 chr4 94579202 94579255 -89709407 - L2 LINE L2 -7 3306 3255 26 0 0 0 chr4 94579282 94579308 -89709354 + AT_rich Low_complexity Low_complexity 1 26 0 205 228 18 35 chr4 94579906 94579963 -89708699 + MIR SINE MIR 85 140 -122 305 253 42 32 chr4 94581040 94581135 -89707527 - MER94 DNA DNA -34 100 5 632 161 0 81 chr4 94582695 94582846 -89705816 - FLAM_A SINE Alu 0 142 2 2241 99 0 10 chr4 94583193 94583487 -89705175 + AluSg SINE Alu 2 292 -18 371 307 113 70 chr4 94583727 94584052 -89704610 - L2 LINE L2 -914 2400 2040 2140 97 0 42 chr4 94584052 94584361 -89704301 + AluSq SINE Alu 2 297 -16 371 307 113 70 chr4 94584361 94584592 -89704070 - L2 LINE L2 -1274 2040 1820 22 56 0 0 chr4 94585049 94585085 -89703577 + AT_rich Low_complexity Low_complexity 1 36 0 567 291 152 48 chr4 94585835 94586336 -89702326 - L1MC4a LINE L1 -1968 5840 5288 2464 177 40 103 chr4 94586672 94586975 -89701687 - Charlie1a DNA MER1_type -1306 1455 1134 1799 88 131 4 chr4 94586975 94587235 -89701427 - AluSg SINE Alu -17 293 1 2464 177 40 103 chr4 94587235 94587840 -89700822 - Charlie1a DNA MER1_type -1627 1134 605 984 201 106 53 chr4 94587933 94587981 -89700681 - Charlie1a DNA MER1_type -2442 319 275 2139 113 20 0 chr4 94587981 94588273 -89700389 - AluSq SINE Alu -15 298 1 984 201 106 53 chr4 94588273 94588527 -89700135 - Charlie1a DNA MER1_type -2486 275 1 1196 191 99 18 chr4 94588593 94588865 -89699797 - AluJb SINE Alu -7 295 2 1330 196 0 65 chr4 94588865 94589156 -89699506 - AluJo SINE Alu -1 311 40 1548 184 0 48 chr4 94589192 94589336 -89699326 - AluJo SINE Alu -32 280 153 2345 65 0 0 chr4 94589336 94589646 -89699016 - AluSc SINE Alu 0 310 1 1548 184 0 48 chr4 94589646 94589793 -89698869 - AluJo SINE Alu -159 153 1 13506 130 34 14 chr4 94590242 94592591 -89696071 + Tigger1 DNA MER2_type 21 2417 -1 2176 121 0 10 chr4 94592858 94593165 -89695497 - AluSx SINE Alu -8 304 1 1998 104 91 0 chr4 94593210 94593497 -89695165 - AluSp SINE Alu 0 313 1 1604 166 92 40 chr4 94593759 94594239 -89694423 - L1MB2 LINE L1 -27 6144 5640 692 194 22 15 chr4 94594932 94595066 -89693596 + AluJo SINE Alu 1 135 -177 2444 68 3 0 chr4 94596390 94596683 -89691979 - AluSg SINE Alu -16 294 1 199 370 22 11 chr4 94596951 94597043 -89691619 + MER5A DNA MER1_type 46 138 -51 270 0 0 0 chr4 94597210 94597240 -89691422 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 243 241 37 120 chr4 94598133 94598241 -89690421 - MIR SINE MIR -152 110 12 1603 190 7 14 chr4 94598840 94599130 -89689532 - AluJo SINE Alu -24 288 1 229 318 118 0 chr4 94599284 94599369 -89689293 + L2 LINE L2 3200 3294 -19 1057 138 38 0 chr4 94599400 94599559 -89689103 - FRAM SINE Alu -15 161 1 710 96 6 121 chr4 94599653 94599810 -89688852 + L1MB2 LINE L1 6032 6170 -1 1764 176 0 14 chr4 94599823 94600118 -89688544 + AluJb SINE Alu 14 304 -8 1807 160 0 17 chr4 94600832 94601141 -89687521 - AluSx SINE Alu 0 304 1 1709 184 14 3 chr4 94601508 94601796 -89686866 - AluJb SINE Alu -15 297 7 1331 218 4 4 chr4 94601984 94602259 -89686403 + AluSp SINE Alu 39 313 0 26 82 0 0 chr4 94602638 94602699 -89685963 + AT_rich Low_complexity Low_complexity 1 61 0 234 0 0 0 chr4 94602849 94602875 -89685787 + (CA)n Simple_repeat Simple_repeat 2 27 0 2002 79 76 3 chr4 94603058 94603373 -89685289 + HSMAR1 DNA Mariner 2 339 -948 * 2983 97 0 0 chr4 94603364 94603767 -89684895 + HSMAR1 DNA Mariner 595 997 -290 1124 106 34 0 chr4 94603768 94603947 -89684715 + HSMAR1 DNA Mariner 1102 1286 -1 1582 239 54 24 chr4 94604148 94604614 -89684048 + MLT1E2 LTR MaLR 1 475 -151 400 292 84 43 chr4 94604641 94604848 -89683814 - L1MEc LINE L1 -2168 4047 3830 2095 107 45 0 chr4 94604848 94605138 -89683524 - AluSp SINE Alu -8 305 3 400 292 84 43 chr4 94605138 94605237 -89683425 - L1MEc LINE L1 -2385 3830 3736 660 224 58 37 chr4 94605245 94605545 -89683117 - L1MEc LINE L1 -3799 2416 2152 * 1535 266 85 34 chr4 94605539 94605955 -89682707 - L1ME LINE L1 -689 5473 5080 2832 65 8 0 chr4 94605955 94606307 -89682355 + THE1A LTR MaLR 1 355 0 11604 90 17 1 chr4 94606307 94607862 -89680800 + THE1A-int LTR MaLR 1 1580 0 2668 72 6 17 chr4 94607862 94608221 -89680441 + THE1A LTR MaLR 1 355 0 1535 266 85 34 chr4 94608221 94608937 -89679725 - L1ME LINE L1 -1081 5081 4280 939 281 51 7 chr4 94608947 94609378 -89679284 - L1ME LINE L1 -1922 4224 3775 3592 117 2 2 chr4 94609381 94609928 -89678734 - MER41B LTR ERV1 -88 547 1 17942 99 25 12 chr4 94609930 94612788 -89675874 - MER41B-int LTR ERV1 -3 5943 3051 400 159 0 0 chr4 94612788 94612851 -89675811 + AluS SINE Alu 1 63 -255 745 119 14 70 chr4 94612851 94612994 -89675668 - MER41B-int LTR ERV1 -4622 2915 2781 * 937 95 12 54 chr4 94612993 94613161 -89675501 - MER41B-int LTR ERV1 -4159 2104 1944 * 2021 151 15 0 chr4 94613156 94613494 -89675168 - MER41B-int LTR ERV1 -5189 2348 2006 4507 108 22 19 chr4 94613496 94614184 -89674478 - MER41B-int LTR ERV1 -5256 690 1 929 112 26 7 chr4 94614184 94614336 -89674326 - MER41B LTR ERV1 0 635 481 895 271 58 63 chr4 94614338 94614394 -89674268 - L1ME LINE L1 -2352 3794 3739 2462 63 3 3 chr4 94614394 94614695 -89673967 + AluSp SINE Alu 1 301 -12 895 271 58 63 chr4 94614695 94615473 -89673189 - L1ME LINE L1 -2407 3739 2965 661 199 45 19 chr4 94615513 94615669 -89672993 + L2 LINE L2 3153 3312 -1 901 145 8 0 chr4 94615686 94615817 -89672845 + FRAM SINE Alu 18 149 -27 1126 91 6 6 chr4 94615817 94615992 -89672670 + (GGAA)n Simple_repeat Simple_repeat 3 177 0 629 134 14 28 chr4 94616027 94616169 -89672493 + GA-rich Low_complexity Low_complexity 1 140 0 888 275 95 38 chr4 94616181 94616692 -89671970 - L2 LINE L2 -176 3137 2597 306 279 214 7 chr4 94616692 94616846 -89671816 - L2 LINE L2 -1492 1822 1637 648 201 7 14 chr4 94617397 94617536 -89671126 - MER20 DNA MER1_type 0 219 82 392 100 0 17 chr4 94617609 94617669 -89670993 - MER20 DNA MER1_type -160 59 1 2092 118 17 0 chr4 94617697 94617993 -89670669 + AluSx SINE Alu 1 301 -11 1862 264 102 33 chr4 94618381 94618864 -89669798 + L1ME3 LINE L1 4648 5096 -1066 829 144 0 0 chr4 94618864 94618982 -89669680 + FLAM_C SINE Alu 1 118 -15 1862 264 102 33 chr4 94618982 94619231 -89669431 + L1ME3 LINE L1 5096 5326 -836 1864 148 7 3 chr4 94619231 94619521 -89669141 + AluSq SINE Alu 1 291 -22 1862 264 102 33 chr4 94619521 94619630 -89669032 + L1ME3 LINE L1 5326 5426 -736 1478 64 11 0 chr4 94619630 94619817 -89668845 + AluSp SINE Alu 122 310 -3 1862 264 102 33 chr4 94619817 94620296 -89668366 + L1ME3 LINE L1 5426 6051 -111 518 114 0 0 chr4 94620408 94620478 -89668184 - AluSq SINE Alu -110 203 134 2123 94 20 24 chr4 94620478 94620776 -89667886 - AluY SINE Alu -13 298 2 1530 164 56 83 chr4 94620856 94621229 -89667433 - MLT1A1 LTR MaLR 0 365 3 317 220 14 142 chr4 94621345 94621422 -89667240 - L1MC4a LINE L1 -1241 6567 6514 7590 34 0 2 chr4 94621422 94622726 -89665936 - L1PA5 LINE L1 0 6154 4852 317 220 14 142 chr4 94622726 94622789 -89665873 - L1MC4a LINE L1 -1294 6514 6445 2211 122 0 3 chr4 94622948 94623252 -89665410 - AluSx SINE Alu -9 303 1 703 307 48 41 chr4 94623381 94623674 -89664988 - MLT1I LTR MaLR -16 393 99 487 207 121 11 chr4 94624260 94624434 -89664228 - L1MC4a LINE L1 -2331 5477 5285 1310 250 37 35 chr4 94624700 94625156 -89663506 - LTR16A1 LTR ERVL 0 457 1 2199 110 0 0 chr4 94626007 94626299 -89662363 + AluSx SINE Alu 1 292 -20 225 163 41 0 chr4 94626364 94626413 -89662249 + (TA)n Simple_repeat Simple_repeat 2 52 0 685 285 25 30 chr4 94627231 94627466 -89661196 - MIR SINE MIR -18 244 11 360 248 68 139 chr4 94627604 94627901 -89660761 - MLT1E LTR MaLR -277 290 1 199 229 0 0 chr4 94627902 94627950 -89660712 + L2 LINE L2 2658 2705 -609 1626 193 7 0 chr4 94628010 94628285 -89660377 + AluJo SINE Alu 6 282 -30 52 14 0 14 chr4 94628285 94628317 -89660345 + AT_rich Low_complexity Low_complexity 1 32 -37 1722 183 3 0 chr4 94628317 94628602 -89660060 - AluJb SINE Alu -26 286 1 52 14 0 14 chr4 94628602 94628639 -89660023 + AT_rich Low_complexity Low_complexity 32 69 0 908 255 122 21 chr4 94628641 94629182 -89659480 + L2 LINE L2 2702 3296 -17 21 0 0 0 chr4 94629247 94629268 -89659394 + AT_rich Low_complexity Low_complexity 1 21 0 350 312 32 0 chr4 94630238 94630363 -89658299 + MIR SINE MIR 105 233 -29 801 178 0 8 chr4 94630665 94630794 -89657868 + FLAM_A SINE Alu 1 128 -5 1066 237 194 22 chr4 94630916 94631452 -89657210 - L1MC4a LINE L1 -1868 5940 5313 378 338 19 19 chr4 94631546 94631706 -89656956 + MIR SINE MIR 83 242 -20 191 289 0 0 chr4 94632259 94632311 -89656351 + L2 LINE L2 3242 3293 -20 295 177 38 25 chr4 94634226 94634305 -89654357 - L1P LINE L1 -900 5246 5167 284 153 51 0 chr4 94634353 94634412 -89654250 - MLT1F-int LTR MaLR -1308 63 2 1780 247 77 10 chr4 94634415 94634909 -89653753 - MLT1F LTR MaLR -2 540 14 389 276 84 50 chr4 94634965 94635152 -89653510 + L1ME4a LINE L1 5871 6069 -52 333 0 0 0 chr4 94635152 94635189 -89653473 + (TG)n Simple_repeat Simple_repeat 2 38 0 389 276 84 50 chr4 94635189 94635240 -89653422 + L1ME4a LINE L1 6069 6117 -4 1409 269 38 59 chr4 94636373 94636831 -89651831 - L1MEc LINE L1 -4447 1949 1512 2070 118 7 26 chr4 94636831 94637136 -89651526 - AluSx SINE Alu -13 299 1 1409 269 38 59 chr4 94637136 94637435 -89651227 - L1MEc LINE L1 -4884 1512 1208 258 319 74 0 chr4 94637507 94637642 -89651020 + MIR SINE MIR 117 261 -1 323 258 274 16 chr4 94637643 94637891 -89650771 - MLT1H LTR MaLR 0 549 238 4150 121 16 27 chr4 94637936 94638309 -89650353 - L1MA8 LINE L1 0 6291 5928 7598 121 43 24 chr4 94638309 94639461 -89649201 - HSMAR2 DNA Mariner -3 1299 119 2045 116 7 0 chr4 94639461 94639745 -89648917 - AluSg SINE Alu -5 305 20 7598 121 43 24 chr4 94639745 94639867 -89648795 - HSMAR2 DNA Mariner -1183 119 1 4150 121 16 27 chr4 94639867 94640240 -89648422 - L1MA8 LINE L1 -363 5928 5553 198 0 0 0 chr4 94640838 94640860 -89647802 + (A)n Simple_repeat Simple_repeat 1 22 0 743 164 0 0 chr4 94641044 94641160 -89647502 - AluJb SINE Alu -196 116 1 2122 145 0 10 chr4 94641599 94641909 -89646753 - AluSx SINE Alu -5 307 1 277 309 10 0 chr4 94641909 94642006 -89646656 - MIR3 SINE MIR -8 200 103 1186 182 57 71 chr4 94642410 94642690 -89645972 - AluJo SINE Alu -36 276 1 1919 118 13 32 chr4 94643101 94643414 -89645248 - AluSc SINE Alu 0 309 3 507 276 84 11 chr4 94643616 94643877 -89644785 - L1MC4a LINE L1 -1888 5920 5641 2210 114 19 3 chr4 94644054 94644361 -89644301 - AluSq SINE Alu 0 313 2 1908 133 36 0 chr4 94644370 94644649 -89644013 - AluSx SINE Alu -23 289 1 459 0 0 0 chr4 94645308 94645359 -89643303 + (TG)n Simple_repeat Simple_repeat 2 52 0 915 278 133 33 chr4 94645447 94645965 -89642697 - HAL1 LINE L1 -629 1878 1309 359 191 0 0 chr4 94646148 94646232 -89642430 - HAL1 LINE L1 -1447 1060 977 2215 98 0 0 chr4 94646243 94646520 -89642142 - AluSx SINE Alu -21 291 15 1856 111 80 14 chr4 94646772 94647061 -89641601 - AluSg SINE Alu -2 308 1 362 269 32 0 chr4 94647331 94647424 -89641238 + MIR3 SINE MIR 107 202 -6 2774 16 3 6 chr4 94647573 94647891 -89640771 + AluYb8 SINE Alu 1 317 -1 1994 138 0 29 chr4 94648086 94648397 -89640265 - AluSx SINE Alu -10 302 1 24 32 0 0 chr4 94648606 94648637 -89640025 + AT_rich Low_complexity Low_complexity 1 31 0 2439 81 3 0 chr4 94648882 94649180 -89639482 - AluSc SINE Alu -10 299 1 195 42 0 0 chr4 94649219 94649243 -89639419 + (TCC)n Simple_repeat Simple_repeat 2 25 0 238 188 21 0 chr4 94649282 94649330 -89639332 + CT-rich Low_complexity Low_complexity 3 51 0 217 337 56 0 chr4 94649609 94649698 -89638964 - L2 LINE L2 -181 3091 2998 1853 132 3 24 chr4 94649761 94650099 -89638563 + AluY SINE Alu 1 332 0 765 282 101 45 chr4 94650161 94650625 -89638037 + LTR33 LTR ERVL 24 513 -8 299 375 66 35 chr4 94650860 94651119 -89637543 - L2 LINE L2 -494 2820 2554 428 192 0 0 chr4 94651324 94651397 -89637265 - FLAM SINE Alu -17 126 54 834 141 0 56 chr4 94651452 94651594 -89637068 + AluJo SINE Alu 1 134 -178 301 165 82 62 chr4 94651606 94651703 -89636959 + L1MC5 LINE L1 7843 7941 -20 382 239 239 0 chr4 94651918 94652052 -89636610 - MIR SINE MIR -8 254 89 2364 105 0 19 chr4 94652054 94652368 -89636294 + AluSc SINE Alu 1 308 -1 22 0 0 0 chr4 94652901 94652923 -89635739 + AT_rich Low_complexity Low_complexity 1 22 0 1546 192 3 42 chr4 94652924 94653232 -89635430 + AluJo SINE Alu 1 296 -16 192 131 33 16 chr4 94653244 94653305 -89635357 + (TA)n Simple_repeat Simple_repeat 1 62 0 25 31 0 0 chr4 94653305 94653337 -89635325 + AT_rich Low_complexity Low_complexity 1 32 0 1918 153 62 13 chr4 94653345 94653730 -89634932 - MER65A LTR ERV1 -41 404 1 2317 119 0 0 chr4 94653837 94654139 -89634523 + AluSx SINE Alu 1 302 -10 760 250 0 0 chr4 94654143 94654299 -89634363 - FAM SINE Alu -19 156 1 4842 217 68 83 chr4 94654301 94654724 -89633938 - MER65A-int LTR ERV1 -53 4818 4390 2245 116 0 0 chr4 94654724 94655034 -89633628 - AluSx SINE Alu -2 310 1 4842 217 68 83 chr4 94655034 94655229 -89633433 - MER65A-int LTR ERV1 -481 4390 4194 240 35 0 0 chr4 94655229 94655258 -89633404 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 4842 217 68 83 chr4 94655258 94655661 -89633001 - MER65A-int LTR ERV1 -677 4194 3787 2300 77 42 0 chr4 94655661 94655948 -89632714 - AluSc SINE Alu -10 299 1 4842 217 68 83 chr4 94655948 94656338 -89632324 - MER65A-int LTR ERV1 -1084 3787 3393 1873 173 7 0 chr4 94656338 94656645 -89632017 - AluJb SINE Alu -1 311 3 4842 217 68 83 chr4 94656645 94656731 -89631931 - MER65A-int LTR ERV1 -1478 3393 3307 2330 96 0 0 chr4 94656731 94657024 -89631638 - AluSg SINE Alu -17 293 1 4842 217 68 83 chr4 94657024 94657133 -89631529 - MER65A-int LTR ERV1 -1564 3307 3198 2185 90 3 10 chr4 94657133 94657459 -89631203 - AluSq SINE Alu 0 324 1 4842 217 68 83 chr4 94657459 94657894 -89630768 - MER65A-int LTR ERV1 -1673 3198 3387 712 191 0 23 chr4 94657894 94658025 -89630637 - FLAM_C SINE Alu -1 132 5 4842 217 68 83 chr4 94658025 94658930 -89629732 - MER65A-int LTR ERV1 -1483 3388 2471 863 150 17 100 chr4 94659011 94659251 -89629411 - MER65A-int LTR ERV1 -2866 3732 3513 253 244 70 12 chr4 94659514 94659600 -89629062 - MER65A-int LTR ERV1 -3936 4184 4094 230 281 0 0 chr4 94659604 94659693 -89628969 + (TA)n Simple_repeat Simple_repeat 1 89 0 269 108 0 0 chr4 94659719 94659756 -89628906 + U2 snRNA snRNA 1 37 -151 1043 204 19 120 chr4 94659756 94660370 -89628292 - MER65A-int LTR ERV1 -521 4359 1552 1711 144 9 81 chr4 94660458 94660791 -89627871 + AluSp SINE Alu 1 309 -4 893 166 49 6 chr4 94660794 94660957 -89627705 + AluJb SINE Alu 129 298 -14 2273 88 20 0 chr4 94660957 94661252 -89627410 + AluSq SINE Alu 1 301 -12 2529 177 51 86 chr4 94661290 94661663 -89626999 - MER65A-int LTR ERV1 -2377 2494 2109 1578 191 69 0 chr4 94661663 94661940 -89626722 + AluJb SINE Alu 1 296 -16 2234 106 14 0 chr4 94661943 94662235 -89626427 + AluSp SINE Alu 1 296 -17 2529 177 51 86 chr4 94662235 94662246 -89626416 - MER65A-int LTR ERV1 -2764 2107 2097 3011 99 21 7 chr4 94662246 94662285 -89626377 - MLT2A1 LTR ERVL 0 444 407 320 62 0 21 chr4 94662285 94662333 -89626329 + (CATA)n Simple_repeat Simple_repeat 2 48 0 3011 99 21 7 chr4 94662333 94662729 -89625933 - MLT2A1 LTR ERVL -37 407 3 2529 177 51 86 chr4 94662729 94663185 -89625477 - MER65A-int LTR ERV1 -2774 2097 1689 718 248 43 65 chr4 94663331 94663702 -89624960 - MER65A-int LTR ERV1 -4493 378 16 1918 161 86 51 chr4 94663715 94664143 -89624519 - MER65A LTR ERV1 0 445 3 496 335 102 50 chr4 94664145 94664213 -89624449 + L1MC4a LINE L1 5416 5479 -2329 2138 103 11 0 chr4 94664213 94664495 -89624167 + AluSx SINE Alu 1 285 -27 496 335 102 50 chr4 94664495 94664615 -89624047 + L1MC4a LINE L1 5479 5591 -2217 2164 120 3 7 chr4 94664615 94664916 -89623746 - AluSx SINE Alu -9 303 4 496 335 102 50 chr4 94664916 94665207 -89623455 + L1MC4a LINE L1 5591 5921 -1887 1004 226 20 0 chr4 94665573 94665768 -89622894 + MER20 DNA MER1_type 1 199 -20 2019 132 3 0 chr4 94666121 94666408 -89622254 + AluSx SINE Alu 1 288 -24 39 22 0 0 chr4 94666680 94666726 -89621936 + AT_rich Low_complexity Low_complexity 1 46 0 643 175 0 0 chr4 94666726 94666823 -89621839 - AluJ/FLAM SINE Alu -212 100 4 279 0 0 0 chr4 94667764 94667795 -89620867 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 1602 108 5 0 chr4 94667795 94668002 -89620660 - AluSc SINE Alu -21 288 78 1496 214 117 57 chr4 94668020 94668533 -89620129 - LTR10B LTR ERV1 -3 544 1 701 61 0 0 chr4 94668533 94668615 -89620047 - AluSc SINE Alu -226 83 2 449 189 0 14 chr4 94668784 94668858 -89619804 - Tigger2 DNA MER2_type -11 2707 2635 1946 124 15 0 chr4 94668887 94669160 -89619502 - AluSx SINE Alu -20 292 16 1106 153 35 3 chr4 94669162 94669454 -89619208 - Tigger2 DNA MER2_type -55 2663 1 1330 248 43 76 chr4 94669526 94669890 -89618772 - HERV16 LTR ERVL -2954 2042 1696 684 158 92 8 chr4 94669890 94670010 -89618652 - FLAM_C SINE Alu -3 130 1 1330 248 43 76 chr4 94670010 94670129 -89618533 - HERV16 LTR ERVL -3300 1696 1575 2068 122 10 3 chr4 94670196 94670492 -89618170 - AluSx SINE Alu -14 298 1 259 237 54 11 chr4 94670513 94670606 -89618056 + L1MC4 LINE L1 7943 8039 -3 295 330 0 0 chr4 94670888 94670985 -89617677 + L1MC/D LINE L1 5712 5808 -2000 309 236 0 0 chr4 94671000 94671055 -89617607 + L1MC4 LINE L1 7419 7473 -569 676 215 38 48 chr4 94671065 94671251 -89617411 + L1MC4 LINE L1 7712 7895 -147 1590 197 13 10 chr4 94671465 94671764 -89616898 + AluJo SINE Alu 1 300 -12 231 111 28 0 chr4 94671893 94671929 -89616733 + tRNA-Met-e tRNA tRNA 1 37 -38 24 0 0 0 chr4 94671966 94671990 -89616672 + AT_rich Low_complexity Low_complexity 1 24 0 1564 94 75 0 chr4 94672122 94672334 -89616328 + AluSg SINE Alu 8 235 -75 470 282 43 38 chr4 94672427 94672636 -89616026 - L2 LINE L2 -108 3205 2996 1996 82 82 0 chr4 94673277 94673557 -89615105 - AluY SINE Alu -8 303 1 1639 161 11 14 chr4 94673713 94673992 -89614670 + AluJo SINE Alu 1 278 -34 366 23 0 0 chr4 94674002 94674045 -89614617 + (GGAA)n Simple_repeat Simple_repeat 3 45 0 608 145 8 0 chr4 94674064 94674181 -89614481 + G-rich Low_complexity Low_complexity 2 119 0 2363 94 0 0 chr4 94674344 94674643 -89614019 - AluSx SINE Alu -13 299 1 328 337 21 17 chr4 94675374 94675521 -89613141 - MIR SINE MIR -61 147 30 180 0 0 0 chr4 94676180 94676200 -89612462 + (A)n Simple_repeat Simple_repeat 1 20 0 2558 68 3 0 chr4 94677812 94678122 -89610540 - AluSx SINE Alu 0 312 2 2384 71 3 0 chr4 94678941 94679236 -89609426 - AluSp SINE Alu -17 296 1 1723 158 4 4 chr4 94679335 94679613 -89609049 - AluJo SINE Alu -34 278 1 21 36 0 0 chr4 94680152 94680180 -89608482 + AT_rich Low_complexity Low_complexity 1 28 0 2240 100 10 7 chr4 94680603 94680913 -89607749 + AluSx SINE Alu 2 312 0 2323 104 0 3 chr4 94681120 94681427 -89607235 + AluSg SINE Alu 1 306 -4 1759 172 17 0 chr4 94681886 94682188 -89606474 + AluJb SINE Alu 1 307 -5 2296 98 6 13 chr4 94682346 94682661 -89606001 + AluSp SINE Alu 1 313 0 389 292 241 41 chr4 94682867 94682920 -89605742 - MIR SINE MIR -21 241 200 2417 80 7 0 chr4 94682920 94683222 -89605440 - AluSg SINE Alu -6 304 1 389 292 241 41 chr4 94683222 94683363 -89605299 - MIR SINE MIR -62 200 8 1010 142 0 0 chr4 94683941 94684082 -89604580 + AluSq SINE Alu 113 253 -60 379 113 38 88 chr4 94684404 94684484 -89604178 - LTR10A LTR ERV1 -61 548 473 450 154 0 111 chr4 94684852 94684903 -89603759 - Charlie4 DNA MER1_type -37 1924 1892 2214 111 24 0 chr4 94684903 94685201 -89603461 + AluSq SINE Alu 1 305 -8 450 154 0 111 chr4 94685201 94685266 -89603396 - Charlie4 DNA MER1_type -69 1892 1821 783 204 81 11 chr4 94685428 94685614 -89603048 + MER3 DNA MER1_type 6 204 -5 2409 97 0 0 chr4 94685639 94685948 -89602714 + AluSx SINE Alu 1 309 -3 183 42 0 0 chr4 94686140 94686164 -89602498 + (T)n Simple_repeat Simple_repeat 1 24 0 1029 122 55 0 chr4 94686278 94686442 -89602220 - L1PB4 LINE L1 -174 5982 5810 272 226 6 6 chr4 94686439 94686512 -89602150 + L1M4c LINE L1 2425 2497 -3887 * 203 280 160 33 chr4 94686521 94686671 -89601991 - L2 LINE L2 -196 3076 2908 657 255 147 10 chr4 94686955 94687159 -89601503 + MIR SINE MIR 11 242 -20 2232 137 0 6 chr4 94687523 94687865 -89600797 + L1MA2 LINE L1 5965 6304 0 480 35 0 0 chr4 94688478 94688536 -89600126 + (CA)n Simple_repeat Simple_repeat 1 58 0 218 287 96 37 chr4 94689498 94689634 -89599028 + MIR SINE MIR 117 260 -2 24 96 0 0 chr4 94689634 94689707 -89598955 + AT_rich Low_complexity Low_complexity 1 73 0 3648 152 91 43 chr4 94689889 94690273 -89598389 - L1MC3 LINE L1 -280 7505 7141 2101 170 42 52 chr4 94690273 94690673 -89597989 - MSTD LTR MaLR 0 396 1 3648 152 91 43 chr4 94690673 94691050 -89597612 - L1MC3 LINE L1 -644 7141 6708 2521 176 92 2 chr4 94691048 94691572 -89597090 - L1M4 LINE L1 -834 5312 4742 * 3513 66 21 26 chr4 94691621 94692090 -89596572 - MER41A LTR ERV1 -87 467 1 12885 100 32 35 chr4 94692090 94692841 -89595821 - MER41A-int LTR ERV1 -2 6093 5341 2086 137 0 0 chr4 94692841 94693126 -89595536 - AluSx SINE Alu -27 285 1 12885 100 32 35 chr4 94693126 94694541 -89594121 - MER41A-int LTR ERV1 -754 5341 3923 2206 119 0 0 chr4 94694541 94694834 -89593828 - AluSg SINE Alu -15 295 3 12885 100 32 35 chr4 94694834 94694881 -89593781 - MER41A-int LTR ERV1 -2172 3923 3877 240 59 0 0 chr4 94694881 94694915 -89593747 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 12885 100 32 35 chr4 94694915 94695078 -89593584 - MER41A-int LTR ERV1 -2218 3877 3715 2514 73 0 0 chr4 94695078 94695380 -89593282 - AluY SINE Alu -9 302 1 12885 100 32 35 chr4 94695380 94696046 -89592616 - MER41A-int LTR ERV1 -2380 3715 2167 776 101 17 17 chr4 94696042 94696161 -89592501 - MER41A-int LTR ERV1 -4908 2629 2511 * 2235 149 45 3 chr4 94696162 94696518 -89592144 - MER41A-int LTR ERV1 -4184 1762 1392 4787 118 10 17 chr4 94696519 94697214 -89591448 - MER41A-int LTR ERV1 -5256 690 1 1097 136 61 30 chr4 94697214 94697412 -89591250 - MER41A LTR ERV1 0 554 351 717 178 13 33 chr4 94698004 94698156 -89590506 + L1MCb LINE L1 220 368 -5677 * 2658 225 82 3 chr4 94698153 94698883 -89589779 + L1MCb LINE L1 2565 3352 -3212 1224 161 21 57 chr4 94699336 94699615 -89589047 - AluSx SINE Alu 0 312 44 1771 186 0 16 chr4 94699700 94700017 -89588645 - AluJb SINE Alu 0 312 1 2313 113 0 0 chr4 94700186 94700497 -89588165 + AluSx SINE Alu 1 311 -1 23 68 0 0 chr4 94700585 94700629 -89588033 + AT_rich Low_complexity Low_complexity 1 44 0 747 207 0 15 chr4 94700817 94700952 -89587710 - FLAM_C SINE Alu 0 133 1 299 103 0 0 chr4 94701432 94701471 -89587191 - L1MCa LINE L1 -5444 982 944 3360 53 25 1 chr4 94701472 94701984 -89586678 + LTR10C LTR ERV1 1 591 0 4774 197 43 6 chr4 94701984 94702896 -89585766 - L1MCa LINE L1 -5480 946 1 733 305 110 79 chr4 94703011 94703240 -89585422 - L2 LINE L2 -346 2968 2748 207 0 0 0 chr4 94703240 94703263 -89585399 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 733 305 110 79 chr4 94703263 94703807 -89584855 - L2 LINE L2 -566 2748 2171 1998 100 3 61 chr4 94703954 94704265 -89584397 + AluSx SINE Alu 1 293 -19 206 282 12 71 chr4 94705352 94705437 -89583225 - MIR SINE MIR -96 112 33 248 183 263 51 chr4 94705557 94705694 -89582968 - MIR SINE MIR -62 200 35 2189 78 7 3 chr4 94706321 94706605 -89582057 - AluSq SINE Alu -28 285 1 191 275 46 92 chr4 94706677 94706739 -89581923 - MIR SINE MIR 0 262 208 2434 56 13 0 chr4 94706739 94707042 -89581620 - AluY SINE Alu -4 307 1 191 275 46 92 chr4 94707042 94707110 -89581552 - MIR SINE MIR -54 208 138 771 191 105 59 chr4 94707412 94707649 -89581013 - MER33 DNA MER1_type -2267 318 62 2074 106 3 7 chr4 94707649 94707966 -89580696 - AluSg SINE Alu 0 316 1 771 191 105 59 chr4 94707966 94708031 -89580631 - MER33 DNA MER1_type -2523 62 1 344 252 0 48 chr4 94708103 94708206 -89580456 + MER5A DNA MER1_type 17 114 -75 4162 148 11 13 chr4 94708961 94709597 -89579065 - MER41B LTR ERV1 0 635 1 2376 104 0 0 chr4 94710095 94710403 -89578259 - AluSx SINE Alu -4 308 1 2152 110 0 7 chr4 94710745 94711036 -89577626 + AluSg SINE Alu 1 289 -21 617 151 65 29 chr4 94711377 94711516 -89577146 - MER104 DNA Tc2 -36 144 1 3303 113 19 2 chr4 94712397 94712876 -89575786 - LTR15 LTR ERV1 -6 487 1 210 200 187 40 chr4 94712949 94713024 -89575638 - MIR SINE MIR -71 191 106 1912 229 111 35 chr4 94714066 94714669 -89573993 - L1ME3 LINE L1 0 6162 5514 1628 174 14 3 chr4 94715011 94715299 -89573363 + AluJb SINE Alu 1 291 -21 589 62 394 119 chr4 94715472 94715632 -89573030 + AluJo SINE Alu 86 289 -23 494 308 132 9 chr4 94715658 94715885 -89572777 - MIR SINE MIR -3 259 5 1458 179 109 7 chr4 94716198 94716472 -89572190 - AluJo SINE Alu -10 302 1 388 245 168 21 chr4 94717668 94717792 -89570870 + MIR SINE MIR 1 150 -112 1146 126 122 19 chr4 94717792 94718006 -89570656 + MER46A DNA MER2_type 1 236 0 388 245 168 21 chr4 94718006 94718024 -89570638 + MIR SINE MIR 150 164 -98 22 35 0 0 chr4 94718147 94718176 -89570486 + AT_rich Low_complexity Low_complexity 1 29 0 1798 134 55 3 chr4 94718206 94718498 -89570164 + AluSx SINE Alu 1 307 -5 23 0 0 0 chr4 94719490 94719513 -89569149 + AT_rich Low_complexity Low_complexity 1 23 0 2370 79 0 0 chr4 94720237 94720527 -89568135 + AluY SINE Alu 1 290 -21 213 315 79 11 chr4 94721795 94721884 -89566778 + L2 LINE L2 3169 3263 -9 301 244 226 30 chr4 94722216 94722446 -89566216 - L1ME LINE L1 -337 5825 5551 370 221 120 17 chr4 94722458 94722725 -89565937 - L1M3 LINE L1 -722 5458 5159 1475 183 30 40 chr4 94723668 94723969 -89564693 + AluJb SINE Alu 1 298 -14 649 141 0 0 chr4 94724142 94724241 -89564421 + AluJb SINE Alu 198 296 -16 2304 83 14 0 chr4 94724308 94724598 -89564064 - AluSx SINE Alu -18 294 1 1932 94 80 11 chr4 94724683 94724958 -89563704 + AluSx SINE Alu 2 295 -17 892 153 49 6 chr4 94725047 94725230 -89563432 - L1MA4 LINE L1 -4 6296 6106 1455 182 28 0 chr4 94726704 94726957 -89561705 + AluJb SINE Alu 1 260 -52 180 0 0 0 chr4 94726958 94726978 -89561684 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6940 37 11 0 chr4 94727482 94728318 -89560344 + L1PA5 LINE L1 5310 6154 0 753 227 187 57 chr4 94728757 94729025 -89559637 + L1MC4 LINE L1 7313 7545 -497 1118 113 73 0 chr4 94729025 94729202 -89559460 + MER30B DNA MER1_type 1 190 0 753 227 187 57 chr4 94729202 94729223 -89559439 + L1MC4 LINE L1 7545 7562 -480 2038 95 21 7 chr4 94729223 94729508 -89559154 + AluSq SINE Alu 3 291 -22 753 227 187 57 chr4 94729508 94729693 -89558969 + L1MC4 LINE L1 7562 7850 -192 388 198 74 8 chr4 94729731 94729852 -89558810 + L1MC4 LINE L1 7914 8042 0 22 0 0 0 chr4 94729859 94729881 -89558781 + AT_rich Low_complexity Low_complexity 1 22 0 977 158 32 0 chr4 94730243 94730401 -89558261 - FRAM SINE Alu 0 166 4 364 96 0 0 chr4 94732870 94732922 -89555740 + L1MA5A LINE L1 6225 6276 -21 1546 167 6 40 chr4 94732951 94733040 -89555622 + L1MB3 LINE L1 5821 5911 -272 2447 76 0 0 chr4 94733040 94733342 -89555320 + AluY SINE Alu 1 302 -9 1546 167 6 40 chr4 94733342 94733576 -89555086 + L1MB3 LINE L1 5911 6133 -50 456 210 83 18 chr4 94734886 94735043 -89553619 + MLT1E LTR MaLR 3 168 -399 335 267 91 57 chr4 94735329 94735505 -89553157 + MIR SINE MIR 22 203 -59 1981 111 14 27 chr4 94736533 94736830 -89551832 + AluSx SINE Alu 1 293 -19 2328 57 7 0 chr4 94736833 94737172 -89551490 + AluY SINE Alu 1 341 0 493 253 97 0 chr4 94737935 94738089 -89550573 + MER33 DNA MER1_type 1 169 -155 14078 121 35 49 chr4 94738224 94738281 -89550381 + Tigger1 DNA MER2_type 1 57 -2361 2066 145 3 3 chr4 94738281 94738592 -89550070 - AluSx SINE Alu -1 311 1 14078 121 35 49 chr4 94738592 94740148 -89548514 + Tigger1 DNA MER2_type 57 1634 -784 1816 161 0 13 chr4 94740148 94740453 -89548209 + AluJb SINE Alu 1 301 -11 14078 121 35 49 chr4 94740453 94740983 -89547679 + Tigger1 DNA MER2_type 1634 2108 -310 2153 132 81 34 chr4 94740983 94741392 -89547270 + MSTA LTR MaLR 1 428 0 14078 121 35 49 chr4 94741392 94741699 -89546963 + Tigger1 DNA MER2_type 2108 2418 0 1744 176 3 3 chr4 94742010 94742299 -89546363 + AluJb SINE Alu 1 289 -23 2128 117 3 64 chr4 94742800 94743159 -89545503 - MER1B DNA MER1_type 0 337 1 224 378 61 13 chr4 94743200 94743430 -89545232 + L2 LINE L2 2551 2791 -523 383 234 86 61 chr4 94743622 94743819 -89544843 + MIR SINE MIR 2 203 -59 482 224 46 66 chr4 94743832 94743984 -89544678 - MIR SINE MIR -10 252 104 807 269 89 49 chr4 94744312 94744717 -89543945 + MLT1J1 LTR MaLR 1 421 -25 1767 174 23 7 chr4 94745033 94745332 -89543330 + AluJb SINE Alu 3 306 -6 207 212 329 24 chr4 94745385 94745470 -89543192 - MIR SINE MIR -117 145 35 656 220 23 45 chr4 94746340 94746517 -89542145 + MER20 DNA MER1_type 46 218 -1 291 93 0 0 chr4 94746729 94746772 -89541890 + (T)n Simple_repeat Simple_repeat 1 43 0 2029 120 62 0 chr4 94747278 94747570 -89541092 - AluSx SINE Alu -2 310 1 324 218 127 68 chr4 94747685 94747973 -89540689 + L1MB7 LINE L1 5708 6016 -105 1729 157 30 7 chr4 94749474 94749779 -89538883 + AluJb SINE Alu 1 312 0 1285 150 40 4 chr4 94750696 94750923 -89537739 + MER46A DNA MER2_type 1 235 -1 812 248 62 33 chr4 94751506 94751748 -89536914 + MIR SINE MIR 11 259 -3 327 267 30 30 chr4 94751824 94751959 -89536703 - L1ME LINE L1 -508 5613 5479 45 62 0 0 chr4 94752765 94752845 -89535817 + AT_rich Low_complexity Low_complexity 1 80 0 1122 147 8 109 chr4 94752988 94753226 -89535436 + AluJo SINE Alu 82 295 -17 1045 76 0 0 chr4 94753676 94753807 -89534855 + AluSq/x SINE Alu 3 133 -179 2380 85 0 10 chr4 94753809 94754115 -89534547 + AluSg SINE Alu 1 303 -7 186 268 0 0 chr4 94754567 94754608 -89534054 - MIR SINE MIR -6 256 216 249 281 180 70 chr4 94754750 94754978 -89533684 - MER112 DNA MER1_type -7 253 1 295 277 62 25 chr4 94755069 94755269 -89533393 + L1MC4a LINE L1 3685 3891 -2255 1731 281 75 40 chr4 94755354 94757139 -89531523 + L1MC4a LINE L1 4086 5399 -747 251 304 0 0 chr4 94757491 94757570 -89531092 + MER116 DNA Mariner 2 80 0 646 228 17 33 chr4 94757607 94757787 -89530875 + MIR SINE MIR 86 262 0 182 191 21 0 chr4 94757794 94757841 -89530821 + (CAT)n Simple_repeat Simple_repeat 1 48 0 314 225 117 0 chr4 94758613 94758733 -89529929 + L1ME4a LINE L1 5984 6117 -4 444 140 0 112 chr4 94758972 94759077 -89529585 - MER2 DNA MER2_type -147 92 1 303 326 0 0 chr4 94760500 94760586 -89528076 - MIR3 SINE MIR -5 203 118 1714 160 7 18 chr4 94761173 94761489 -89527173 + AluJb SINE Alu 4 316 0 306 232 37 12 chr4 94762023 94762105 -89526557 - MIR SINE MIR -15 247 164 207 0 0 0 chr4 94762576 94762599 -89526063 + (A)n Simple_repeat Simple_repeat 1 23 0 765 242 47 0 chr4 94762674 94762889 -89525773 + L1M4 LINE L1 3511 3735 -2411 345 278 35 17 chr4 94765273 94765388 -89523274 + L2 LINE L2 3150 3266 -6 395 143 0 153 chr4 94766047 94766145 -89522517 + MLT1D LTR MaLR 3 85 -420 1415 190 138 16 chr4 94766165 94766549 -89522113 + LTR48B LTR ERV1 206 636 -8 3662 104 65 55 chr4 94767498 94768102 -89520560 - MER4B LTR ERV1 0 610 1 303 280 19 47 chr4 94768119 94768226 -89520436 + MER5B DNA MER1_type 3 106 -72 3185 110 10 103 chr4 94768334 94768510 -89520152 + LTR8 LTR ERV1 1 192 -499 2059 132 3 80 chr4 94768510 94768874 -89519788 + MER1B DNA MER1_type 1 336 -1 3185 110 10 103 chr4 94768874 94769287 -89519375 + LTR8 LTR ERV1 192 535 -156 2012 196 68 25 chr4 94769289 94769729 -89518933 - LTR2B LTR ERV1 0 490 32 1008 120 25 25 chr4 94769748 94769906 -89518756 + LTR8 LTR ERV1 534 691 0 336 238 113 78 chr4 94770322 94770578 -89518084 + L1ME LINE L1 5592 5824 -297 1190 226 56 31 chr4 94771854 94772173 -89516489 + LTR10C LTR ERV1 244 570 -21 482 275 80 40 chr4 94772190 94772441 -89516221 + HERVI LTR ERV1 1 261 -7524 19424 283 43 39 chr4 94772641 94779728 -89508934 + HERVI LTR ERV1 613 7729 -56 1127 220 61 35 chr4 94779935 94780248 -89508414 + LTR10C LTR ERV1 244 564 -27 272 227 141 16 chr4 94780536 94780664 -89507998 + L1MB2 LINE L1 2832 2975 -3171 2154 171 11 3 chr4 94780664 94781021 -89507641 + MER4D LTR ERV1 517 876 -27 414 232 78 32 chr4 94781023 94781125 -89507537 + L1MB2 LINE L1 2942 3038 -3108 2207 112 0 13 chr4 94781125 94781429 -89507233 + AluSx SINE Alu 1 300 -12 414 232 78 32 chr4 94781429 94781529 -89507133 + L1MB2 LINE L1 3038 3154 -2992 356 253 0 21 chr4 94781537 94781632 -89507030 + AluSq/x SINE Alu 41 133 -169 235 164 55 0 chr4 94781637 94781692 -89506970 + L1MB2 LINE L1 3219 3276 -2870 2264 88 3 0 chr4 94781727 94782040 -89506622 - AluSp SINE Alu 0 314 1 7194 196 43 21 chr4 94782042 94783232 -89505430 + L1MB2 LINE L1 3628 4790 -1381 1899 165 0 7 chr4 94783232 94783529 -89505133 - AluJo SINE Alu -17 295 1 7194 196 43 21 chr4 94783529 94784815 -89503847 + L1MB2 LINE L1 4790 6162 -9 546 281 113 25 chr4 94784909 94785147 -89503515 - MIR SINE MIR 0 262 4 1294 250 82 112 chr4 94785717 94786444 -89502218 + L1MC4 LINE L1 6730 7400 -642 1879 136 20 10 chr4 94786444 94786738 -89501924 + AluJo SINE Alu 1 297 -15 1294 250 82 112 chr4 94786738 94787363 -89501299 + L1MC4 LINE L1 7400 8042 0 249 229 14 0 chr4 94787585 94787655 -89501007 + L1ME3A LINE L1 5459 5529 -641 2862 130 24 11 chr4 94787679 94788580 -89500082 - L1PB3 LINE L1 -55 6099 5128 1063 245 42 32 chr4 94788583 94788963 -89499699 + L1ME3A LINE L1 5557 5940 -230 438 20 0 0 chr4 94789187 94789238 -89499424 + (TG)n Simple_repeat Simple_repeat 2 52 0 2731 144 90 53 chr4 94789243 94789993 -89498669 + MER21A LTR ERV1 32 931 0 1744 130 43 14 chr4 94790591 94790892 -89497770 - AluSx SINE Alu 0 309 1 1546 195 23 10 chr4 94792685 94792993 -89495669 + AluJb SINE Alu 1 312 0 24 0 0 0 chr4 94793003 94793027 -89495635 + AT_rich Low_complexity Low_complexity 1 24 0 254 293 121 17 chr4 94793633 94793749 -89494913 - L2 LINE L2 -25 3288 3161 2294 91 0 7 chr4 94793877 94794174 -89494488 + AluSg SINE Alu 6 300 -10 642 246 129 9 chr4 94794230 94794454 -89494208 - MIR SINE MIR 0 262 12 256 337 11 22 chr4 94794442 94794531 -89494131 - L2 LINE L2 0 3272 3185 * 2328 82 14 0 chr4 94794576 94794869 -89493793 + AluSp SINE Alu 1 297 -16 2310 115 0 0 chr4 94795130 94795442 -89493220 - AluSx SINE Alu 0 312 1 230 196 0 103 chr4 94796458 94796565 -89492097 + T-rich Low_complexity Low_complexity 4 99 0 262 263 44 70 chr4 94796670 94796784 -89491878 - MIR SINE MIR -89 173 63 24 32 0 0 chr4 94797579 94797610 -89491052 + GC_rich Low_complexity Low_complexity 1 31 0 243 0 0 0 chr4 94798101 94798128 -89490534 + (CCCCCG)n Simple_repeat Simple_repeat 3 29 0 25 51 0 0 chr4 94798143 94798182 -89490480 + GC_rich Low_complexity Low_complexity 1 39 0 1460 156 3 101 chr4 94799018 94799344 -89489318 + AluJb SINE Alu 1 294 -18 24 0 0 0 chr4 94799464 94799488 -89489174 + AT_rich Low_complexity Low_complexity 1 24 0 360 167 33 0 chr4 94799567 94799627 -89489035 - AluJb SINE Alu -11 291 230 6006 121 24 21 chr4 94799628 94801186 -89487476 + pTR5 LTR ERV1 733 2438 0 1345 166 4 13 chr4 94801189 94801418 -89487244 - AluJb SINE Alu -79 233 7 605 250 60 5 chr4 94801420 94801620 -89487042 - L1ME4a LINE L1 -262 5859 5649 216 0 0 0 chr4 94801621 94801645 -89487017 + (TA)n Simple_repeat Simple_repeat 2 25 0 797 100 0 33 chr4 94801645 94801765 -89486897 - FLAM_C SINE Alu -14 129 14 1896 211 42 35 chr4 94801868 94802494 -89486168 + L1MC4 LINE L1 7180 7807 -1 21 36 0 0 chr4 94802534 94802562 -89486100 + AT_rich Low_complexity Low_complexity 1 28 0 344 337 31 25 chr4 94802694 94802890 -89485772 + L2 LINE L2 2897 3093 -179 524 241 142 60 chr4 94802938 94802974 -89485688 - MIR SINE MIR -10 252 220 1952 175 17 26 chr4 94802974 94803323 -89485339 + MER7A DNA MER2_type 2 345 -1 524 241 142 60 chr4 94803323 94803518 -89485144 - MIR SINE MIR -42 220 2 348 306 25 33 chr4 94803530 94803651 -89485011 + L2 LINE L2 3138 3257 -15 1645 175 0 57 chr4 94803651 94803779 -89484883 + AluJo SINE Alu 1 135 -177 2391 72 10 0 chr4 94803779 94804072 -89484590 - AluSp SINE Alu -17 296 1 1645 175 0 57 chr4 94804072 94804258 -89484404 + AluJo SINE Alu 135 297 -15 1204 208 79 14 chr4 94804431 94804710 -89483952 - AluJo SINE Alu -11 301 5 773 127 0 9 chr4 94804803 94804913 -89483749 + AluJo SINE Alu 22 130 -182 1910 88 84 0 chr4 94804913 94805175 -89483487 + AluSg SINE Alu 1 284 -26 29 28 0 0 chr4 94805177 94805213 -89483449 + AT_rich Low_complexity Low_complexity 1 36 0 642 187 130 0 chr4 94805222 94805345 -89483317 + AluJo SINE Alu 130 268 -44 392 305 110 24 chr4 94805349 94805700 -89482962 - LTR33 LTR ERVL -104 417 5 315 286 31 64 chr4 94805862 94806118 -89482544 - L1ME3A LINE L1 -250 5920 5673 247 289 125 19 chr4 94806209 94806313 -89482349 + MIR SINE MIR 28 142 -66 2069 115 0 20 chr4 94806329 94806633 -89482029 + AluSx SINE Alu 1 298 -14 353 280 13 89 chr4 94806701 94806825 -89481837 + L2 LINE L2 3169 3280 -33 1058 288 124 7 chr4 94806825 94807228 -89481434 - MLT1J2 LTR MaLR 0 450 1 353 280 13 89 chr4 94807228 94807260 -89481402 + L2 LINE L2 3280 3313 0 1822 167 0 10 chr4 94807440 94807745 -89480917 + AluJo SINE Alu 1 302 -10 395 279 73 18 chr4 94808362 94808581 -89480081 - L1ME3A LINE L1 -1233 4913 4683 426 169 0 0 chr4 94809229 94809288 -89479374 + AluS SINE Alu 3 61 -257 909 169 0 0 chr4 94809290 94809438 -89479224 + AluJb SINE Alu 163 310 -2 3269 91 7 15 chr4 94809452 94809915 -89478747 + MER11C LTR ERVK 590 1048 -23 440 206 40 103 chr4 94809942 94810117 -89478545 + L1MC4 LINE L1 6912 7075 -967 1714 194 55 11 chr4 94810133 94810515 -89478147 + L1MC4 LINE L1 7207 7605 -437 1439 198 14 75 chr4 94810523 94810871 -89477791 + MLT1A1 LTR MaLR 1 327 -38 884 234 58 69 chr4 94810886 94811177 -89477485 + L1MC4 LINE L1 7612 7899 -143 267 154 19 0 chr4 94811179 94811231 -89477431 + L1MC4 LINE L1 7984 8036 -6 1224 161 21 57 chr4 94812091 94812370 -89476292 - AluSx SINE Alu 0 312 44 1771 186 0 16 chr4 94812455 94812772 -89475890 - AluJb SINE Alu 0 312 1 2153 106 0 0 chr4 94812941 94813309 -89475353 + AluSx SINE Alu 1 368 0 23 68 0 0 chr4 94813369 94813413 -89475249 + AT_rich Low_complexity Low_complexity 1 44 0 897 163 0 15 chr4 94813601 94813736 -89474926 - FLAM_C SINE Alu 0 133 1 22 35 0 0 chr4 94813986 94814015 -89474647 + AT_rich Low_complexity Low_complexity 1 29 0 391 228 118 52 chr4 94814032 94814168 -89474494 - L2 LINE L2 -4 3309 3165 300 217 29 0 chr4 94814203 94814272 -89474390 + L1MB7 LINE L1 4774 4844 -1302 2248 161 19 22 chr4 94814295 94814448 -89474214 + MLT1A1 LTR MaLR 1 153 -212 1725 120 4 0 chr4 94814448 94814681 -89473981 + AluSg SINE Alu 64 297 -13 2248 161 19 22 chr4 94814681 94814893 -89473769 + MLT1A1 LTR MaLR 153 365 0 957 141 25 12 chr4 94814951 94815114 -89473548 - L1PA15 LINE L1 0 6165 6001 1914 174 73 16 chr4 94815114 94815499 -89473163 + L1MB7 LINE L1 5759 6165 -19 437 265 21 18 chr4 94815722 94815905 -89472757 - L1M4c LINE L1 -4907 1477 1315 2136 130 0 9 chr4 94815935 94816250 -89472412 + AluSx SINE Alu 1 312 0 1746 168 0 4 chr4 94816301 94816581 -89472081 - AluJo SINE Alu -33 279 1 2118 129 0 0 chr4 94817096 94817398 -89471264 + AluSx SINE Alu 1 302 -10 230 179 179 0 chr4 94817447 94817514 -89471148 - MIR SINE MIR 0 262 184 195 42 0 0 chr4 94817549 94817573 -89471089 + (T)n Simple_repeat Simple_repeat 1 24 0 273 209 139 0 chr4 94817672 94817758 -89470904 - L1MB3 LINE L1 -1 6182 6085 * 543 201 18 37 chr4 94817750 94817914 -89470748 - L1M4 LINE L1 -840 5306 5146 * 3957 164 31 35 chr4 94817911 94818775 -89469887 + L1MA7 LINE L1 4456 5316 -837 800 196 55 12 chr4 94818776 94818792 -89469870 + AluJo SINE Alu 121 135 -177 2610 56 0 0 chr4 94818792 94819098 -89469564 + AluY SINE Alu 1 306 -5 800 196 55 12 chr4 94819098 94819244 -89469418 + AluJo SINE Alu 135 290 -22 5112 159 40 15 chr4 94819249 94820185 -89468477 + L1MA7 LINE L1 5323 6281 -10 240 395 22 0 chr4 94820542 94820676 -89467986 - HAL1 LINE L1 -2370 137 1 314 306 60 48 chr4 94820797 94821065 -89467597 + L1ME4a LINE L1 5629 5899 -222 637 232 0 16 chr4 94821087 94821212 -89467450 + FLAM_A SINE Alu 1 123 -10 24 0 0 0 chr4 94821212 94821236 -89467426 + AT_rich Low_complexity Low_complexity 1 24 0 2200 108 7 0 chr4 94821278 94821575 -89467087 + AluSx SINE Alu 1 299 -13 1746 154 18 3 chr4 94821735 94822021 -89466641 + AluJb SINE Alu 1 290 -22 588 121 0 0 chr4 94822042 94822133 -89466529 + L1MA5 LINE L1 6208 6298 -2 24 0 0 0 chr4 94823944 94823968 -89464694 + AT_rich Low_complexity Low_complexity 1 24 0 2093 104 101 9 chr4 94823969 94824306 -89464356 - L1MA3 LINE L1 -11 6294 5927 624 217 179 38 chr4 94824825 94825037 -89463625 + MIR SINE MIR 21 262 0 2094 117 10 0 chr4 94825104 94825394 -89463268 + AluSx SINE Alu 1 293 -19 22 0 0 0 chr4 94826718 94826740 -89461922 + AT_rich Low_complexity Low_complexity 1 22 0 286 157 20 0 chr4 94826829 94826880 -89461782 + U7 snRNA snRNA 2 53 -10 819 188 0 0 chr4 94826904 94827037 -89461625 + FLAM_C SINE Alu 1 133 -10 1879 149 44 7 chr4 94828211 94828506 -89460156 - AluJo SINE Alu -6 306 1 2260 154 47 20 chr4 94828508 94828723 -89459939 - MSTB1 LTR MaLR -12 420 212 2510 83 0 0 chr4 94828723 94829025 -89459637 - AluSx SINE Alu -9 303 2 2260 154 47 20 chr4 94829025 94829218 -89459444 - MSTB1 LTR MaLR -220 212 1 2030 128 3 3 chr4 94830465 94830775 -89457887 + AluSx SINE Alu 1 310 0 235 264 46 46 chr4 94830775 94830851 -89457811 + MIR SINE MIR 153 232 -30 978 149 35 29 chr4 94831154 94831310 -89457352 - AluSg/x SINE Alu -17 293 134 2085 128 7 0 chr4 94831310 94831607 -89457055 - AluSq SINE Alu -2 311 13 978 149 35 29 chr4 94831607 94831624 -89457038 - AluSg/x SINE Alu -176 134 119 1834 150 29 64 chr4 94832036 94832410 -89456252 - MLT1A1 LTR MaLR -4 361 1 239 200 36 0 chr4 94832434 94832489 -89456173 + Charlie8 DNA MER1_type 1351 1407 -1010 2361 100 0 3 chr4 94832572 94832882 -89455780 + AluY SINE Alu 1 309 -2 348 298 84 26 chr4 94832917 94833108 -89455554 - L1M4 LINE L1 -2085 4061 3860 2284 113 0 7 chr4 94833162 94833472 -89455190 - AluSx SINE Alu -4 308 1 234 301 163 23 chr4 94834276 94834438 -89454224 - L1ME4a LINE L1 -4 6117 5979 2223 80 45 0 chr4 94834438 94834726 -89453936 + AluSp SINE Alu 1 301 -12 234 301 163 23 chr4 94834726 94834869 -89453793 - L1ME4a LINE L1 -142 5979 5769 1902 108 80 10 chr4 94834966 94835254 -89453408 - AluSg SINE Alu -2 308 1 352 253 35 0 chr4 94835530 94835617 -89453045 + MIR3 SINE MIR 113 202 -6 2892 12 0 6 chr4 94835766 94836086 -89452576 + AluYb8 SINE Alu 1 318 0 1985 138 0 29 chr4 94836281 94836592 -89452070 - AluSx SINE Alu -10 302 1 24 32 0 0 chr4 94836801 94836832 -89451830 + AT_rich Low_complexity Low_complexity 1 31 0 2476 81 0 0 chr4 94837077 94837375 -89451287 - AluSc SINE Alu -11 298 1 195 42 0 0 chr4 94837414 94837438 -89451224 + (TCC)n Simple_repeat Simple_repeat 2 25 0 238 188 21 0 chr4 94837477 94837525 -89451137 + CT-rich Low_complexity Low_complexity 3 51 0 213 337 56 0 chr4 94837804 94837893 -89450769 - L2 LINE L2 -181 3091 2998 1829 135 3 28 chr4 94837956 94838291 -89450371 + AluY SINE Alu 1 328 0 898 278 101 45 chr4 94838353 94838817 -89449845 + LTR33 LTR ERVL 24 513 -8 249 391 39 39 chr4 94839078 94839311 -89449351 - L2 LINE L2 -528 2786 2554 458 192 0 0 chr4 94839516 94839589 -89449073 - FLAM SINE Alu -17 126 54 822 141 0 56 chr4 94839644 94839786 -89448876 + AluJo SINE Alu 1 134 -178 907 49 27 3 chr4 94839803 94840013 -89448649 - LTR10C LTR ERV1 -309 282 1 1431 159 37 0 chr4 94840014 94840415 -89448247 + L1MCa LINE L1 944 1390 -5036 4428 239 33 11 chr4 94840420 94841548 -89447114 + L1M4 LINE L1 3502 4654 -1492 726 172 93 0 chr4 94841564 94841715 -89446947 - LTR43 LTR ERV1 -83 519 355 42564 55 13 0 chr4 94841716 94847786 -89440876 - L1PA5 LINE L1 -4 6150 1 269 143 0 0 chr4 94848990 94849032 -89439630 - MSTB2 LTR MaLR 0 457 416 * 348 175 0 0 chr4 94849025 94849082 -89439580 - MSTC LTR MaLR -251 145 89 1060 135 12 0 chr4 94849082 94849245 -89439417 - FRAM SINE Alu -12 164 1 405 217 54 0 chr4 94849246 94849338 -89439324 - MSTC LTR MaLR -331 97 1 345 329 83 48 chr4 94850298 94850587 -89438075 + LTR67 LTR ERVL 238 536 -21 267 355 8 16 chr4 94851107 94851228 -89437434 + HERVL LTR ERVL 561 680 -5084 258 317 33 71 chr4 94851494 94851860 -89436802 + HERVL LTR ERVL 997 1348 -4306 180 0 0 0 chr4 94852162 94852182 -89436480 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2301 78 0 60 chr4 94852183 94852530 -89436132 - LTR17 LTR ERV1 -454 326 1 2307 68 3 3 chr4 94852530 94852822 -89435840 - HERV17 LTR ERV1 0 8626 8335 322 26 0 0 chr4 94852812 94852851 -89435811 - HERV17 LTR ERV1 -1078 7548 7510 * 5214 33 2 0 chr4 94852844 94853456 -89435206 - HERV17 LTR ERV1 -2607 6019 5407 * 10724 62 7 5 chr4 94853437 94854760 -89433902 - HERV17 LTR ERV1 -4872 3754 2430 9797 74 7 16 chr4 94854743 94856018 -89432644 - HERV17 LTR ERV1 -6610 2016 753 * 5115 82 16 26 chr4 94856179 94856872 -89431790 - HERV17 LTR ERV1 -7939 687 2 3756 113 6 4 chr4 94856872 94857392 -89431270 - LTR17 LTR ERV1 0 780 260 1273 243 147 47 chr4 94857400 94857890 -89430772 - MLT1L LTR MaLR -61 554 16 309 299 52 0 chr4 94857902 94857999 -89430663 + HERVL LTR ERVL 3002 3103 -2551 2373 92 3 16 chr4 94858070 94858386 -89430276 - AluSp SINE Alu 0 313 2 590 283 0 14 chr4 94858513 94858658 -89430004 + HERVL LTR ERVL 3371 3513 -2251 216 0 0 0 chr4 94858671 94858695 -89429967 + (TC)n Simple_repeat Simple_repeat 2 25 0 327 192 0 0 chr4 94858698 94858771 -89429891 + (TA)n Simple_repeat Simple_repeat 1 73 0 249 225 100 0 chr4 94858772 94858852 -89429810 + L1MC4 LINE L1 6615 6702 -1340 * 256 207 46 23 chr4 94858818 94858905 -89429757 - L1MC4 LINE L1 -1340 6702 6614 225 250 12 38 chr4 94858860 94858910 -89429752 + L1MCa LINE L1 2006 2055 -4371 * 474 18 0 0 chr4 94858910 94858965 -89429697 + (CA)n Simple_repeat Simple_repeat 2 56 0 225 250 12 38 chr4 94858965 94858994 -89429668 + L1MCa LINE L1 2055 2083 -4343 1624 295 66 24 chr4 94859065 94859824 -89428838 + HERVL LTR ERVL 3595 4434 -1220 2318 75 0 0 chr4 94860590 94860895 -89427767 - AluY SINE Alu 0 305 1 23 33 0 0 chr4 94860945 94860975 -89427687 + AT_rich Low_complexity Low_complexity 1 30 0 237 266 124 18 chr4 94860975 94861088 -89427574 + L3 LINE CR1 871 995 -582 290 220 231 19 chr4 94861198 94861407 -89427255 + L3 LINE CR1 1220 1527 -50 319 241 78 0 chr4 94861432 94861548 -89427114 - L1MC4 LINE L1 0 8042 7918 198 0 0 0 chr4 94861548 94861570 -89427092 + (CA)n Simple_repeat Simple_repeat 1 22 0 30685 47 0 3 chr4 94861574 94865313 -89423349 - L1P LINE L1 -2413 3733 5 417 219 38 29 chr4 94865317 94865422 -89423240 - L1MC4 LINE L1 -135 7907 7802 240 100 0 0 chr4 94865751 94865791 -89422871 + (CAAAA)n Simple_repeat Simple_repeat 3 42 0 1906 139 13 28 chr4 94866574 94866891 -89421771 + AluSx SINE Alu 1 312 0 1714 174 0 42 chr4 94867013 94867324 -89421338 - AluJo SINE Alu -14 298 1 4672 151 48 11 chr4 94867526 94868323 -89420339 + LTR1B LTR ERV1 1 826 0 3103 69 35 0 chr4 94869151 94869573 -89419089 - L1PA11 LINE L1 0 6174 5738 5504 93 17 4 chr4 94869845 94870612 -89418050 + L1PA11 LINE L1 5397 6173 -1 281 200 9 26 chr4 94870858 94870973 -89417689 + (TA)n Simple_repeat Simple_repeat 2 114 0 1703 66 33 0 chr4 94871055 94871297 -89417365 - L1MA2 LINE L1 0 6304 6055 1732 85 13 0 chr4 94871300 94871536 -89417126 - L1PA11 LINE L1 -8 6166 5928 494 238 0 48 chr4 94871536 94871725 -89416937 - L1MC5 LINE L1 -48 7913 7734 186 261 65 0 chr4 94874259 94874305 -89414357 + L2 LINE L2 3264 3312 -1 22 70 0 0 chr4 94874377 94874420 -89414242 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr4 94874528 94874550 -89414112 + AT_rich Low_complexity Low_complexity 1 22 0 2063 121 0 13 chr4 94875040 94875338 -89413324 + AluSx SINE Alu 3 296 -16 2957 166 95 71 chr4 94875338 94875645 -89413017 + LOR1-int LTR ERV1 1037 1335 -4996 2075 121 7 3 chr4 94875645 94875935 -89412727 + AluSx SINE Alu 1 291 -21 2957 166 95 71 chr4 94875935 94876304 -89412358 + LOR1-int LTR ERV1 1335 1694 -4637 1756 181 7 0 chr4 94876304 94876592 -89412070 - AluJo SINE Alu -22 290 1 2957 166 95 71 chr4 94876592 94877772 -89410890 + LOR1-int LTR ERV1 1694 4183 -2148 253 191 0 0 chr4 94877903 94877950 -89410712 + LOR1-int LTR ERV1 3787 3833 -4287 203 279 0 0 chr4 94878284 94878327 -89410335 - MER5B DNA MER1_type -129 49 7 24 0 0 0 chr4 94878365 94878389 -89410273 + AT_rich Low_complexity Low_complexity 1 24 0 455 162 202 3 chr4 94881168 94881285 -89407377 + L1MA7 LINE L1 5627 5767 -395 2776 149 34 11 chr4 94881407 94881938 -89406724 + L1MA7 LINE L1 5748 6290 -1 23 0 0 0 chr4 94882182 94882205 -89406457 + AT_rich Low_complexity Low_complexity 1 23 0 361 288 144 25 chr4 94882467 94882647 -89406015 - L2 LINE L2 0 3313 3156 1901 163 0 0 chr4 94882647 94882935 -89405727 + AluJo SINE Alu 9 296 -16 361 288 144 25 chr4 94882935 94883039 -89405623 - L2 LINE L2 -157 3156 2995 279 312 65 0 chr4 94883816 94883893 -89404769 - MIR SINE MIR -148 114 33 238 180 0 60 chr4 94884389 94884439 -89404223 - Alu SINE Alu -10 165 119 2096 88 0 75 chr4 94884446 94884628 -89404034 - AluSp SINE Alu -18 295 146 2292 86 0 0 chr4 94884628 94884918 -89403744 - AluSg SINE Alu -20 290 1 2096 88 0 75 chr4 94884918 94885054 -89403608 - AluSp SINE Alu -167 146 1 306 227 15 0 chr4 94885058 94885124 -89403538 - MIR SINE MIR -6 256 190 804 213 9 56 chr4 94885142 94885358 -89403304 - L1MC5 LINE L1 -48 7913 7708 907 220 42 45 chr4 94885380 94885734 -89402928 - L1MC5 LINE L1 -436 7525 7173 376 271 0 0 chr4 94885737 94885822 -89402840 - MIR SINE MIR -65 197 113 419 266 48 24 chr4 94885919 94886043 -89402619 + MIR SINE MIR 8 134 -128 719 306 36 22 chr4 94886191 94886551 -89402111 - L1ME3A LINE L1 -284 5886 5522 702 264 10 39 chr4 94887138 94887346 -89401316 - MIR SINE MIR -1 261 60 1989 147 7 0 chr4 94887786 94888078 -89400584 + AluSx SINE Alu 3 296 -16 2391 89 3 0 chr4 94888080 94888382 -89400280 + AluSx SINE Alu 3 305 -7 1979 161 6 6 chr4 94888388 94888729 -89399933 - L1PA13 LINE L1 -13 6150 5810 427 221 105 11 chr4 94890706 94890801 -89397861 + MER5A DNA MER1_type 9 112 -77 21 0 0 0 chr4 94890879 94890900 -89397762 + AT_rich Low_complexity Low_complexity 1 21 0 337 310 110 0 chr4 94891317 94891472 -89397190 - L1ME4a LINE L1 -196 5925 5754 22 0 0 0 chr4 94891476 94891498 -89397164 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr4 94891958 94892003 -89396659 + AT_rich Low_complexity Low_complexity 1 45 0 442 271 90 4 chr4 94892195 94892439 -89396223 - L1ME3A LINE L1 -240 5930 5666 584 272 129 5 chr4 94892870 94893094 -89395568 - L1ME3A LINE L1 -529 5641 5390 377 179 81 24 chr4 94893150 94893340 -89395322 + L1MA5 LINE L1 6171 6367 0 25 0 0 0 chr4 94894443 94894468 -89394194 + AT_rich Low_complexity Low_complexity 1 25 0 197 301 24 36 chr4 94894475 94894558 -89394104 + L2 LINE L2 2305 2386 -928 2303 78 0 35 chr4 94894558 94894877 -89393785 - AluY SINE Alu -3 308 1 637 168 63 0 chr4 94894937 94895080 -89393582 + MER104 DNA Tc2 13 164 -16 2199 120 7 0 chr4 94895141 94895441 -89393221 - AluSx SINE Alu -10 302 1 801 188 107 42 chr4 94895518 94895624 -89393038 - L1MB7 LINE L1 -19 6165 6067 2268 112 0 0 chr4 94895624 94895920 -89392742 - AluSx SINE Alu -16 296 1 801 188 107 42 chr4 94895920 94896053 -89392609 - L1MB7 LINE L1 -117 6067 5910 972 107 0 0 chr4 94896100 94896231 -89392431 + MER41D LTR ERV1 1 131 -426 391 256 102 7 chr4 94896430 94896567 -89392095 + L1ME LINE L1 5491 5640 -481 2152 131 0 0 chr4 94896930 94897227 -89391435 - AluSx SINE Alu -15 297 1 2136 114 4 0 chr4 94897281 94897627 -89391035 + AluSp SINE Alu 3 349 0 288 369 85 46 chr4 94897685 94897945 -89390717 + L2 LINE L2 2969 3238 -34 1125 143 113 0 chr4 94898667 94898870 -89389792 - L1MC1 LINE L1 -340 5993 5768 2169 93 10 22 chr4 94898910 94899221 -89389441 - AluSg SINE Alu -3 307 1 25 0 0 0 chr4 94899428 94899453 -89389209 + AT_rich Low_complexity Low_complexity 1 25 0 1388 171 107 18 chr4 94899696 94899976 -89388686 + AluJo SINE Alu 4 308 -4 2376 81 0 3 chr4 94900078 94900374 -89388288 - AluSx SINE Alu -16 296 2 2023 134 7 3 chr4 94900699 94901005 -89387657 - AluSc SINE Alu -2 307 1 2152 123 10 0 chr4 94901017 94901327 -89387335 - AluSq SINE Alu 0 313 1 2356 62 0 17 chr4 94901599 94901891 -89386771 - AluY SINE Alu -24 287 1 194 397 86 0 chr4 94901899 94902015 -89386647 + L2 LINE L2 2779 2904 -410 283 283 9 28 chr4 94902453 94902559 -89386103 + L2 LINE L2 3140 3243 -70 21 71 0 0 chr4 94902565 94902607 -89386055 + AT_rich Low_complexity Low_complexity 1 42 0 512 56 0 0 chr4 94905395 94905467 -89383195 - AluY SINE Alu -6 303 232 1366 94 6 11 chr4 94905467 94905647 -89383015 - AluY SINE Alu -132 179 1 256 267 53 19 chr4 94905823 94905969 -89382693 - MIR SINE MIR -30 232 31 1370 196 116 13 chr4 94906198 94906509 -89382153 + MER7A DNA MER2_type 2 342 -4 776 178 0 7 chr4 94906914 94907049 -89381613 + AluJo SINE Alu 1 134 -178 212 219 31 16 chr4 94907052 94907116 -89381546 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 277 298 75 0 chr4 94907619 94907713 -89380949 - L2 LINE L2 -13 3300 3200 2318 98 3 0 chr4 94907747 94908044 -89380618 + AluSx SINE Alu 1 298 -14 1109 306 48 99 chr4 94908148 94908462 -89380200 - AluSc SINE Alu -1 298 1 2252 110 0 7 chr4 94908937 94909247 -89379415 + AluSx SINE Alu 1 308 -4 2068 108 17 17 chr4 94909462 94909759 -89378903 + AluSg SINE Alu 1 297 -13 2267 89 20 0 chr4 94910208 94910512 -89378150 - AluSp SINE Alu -3 310 1 5129 76 17 0 chr4 94910987 94911682 -89376980 - L1PA13 LINE L1 -1 6162 5456 777 195 41 35 chr4 94911692 94911861 -89376801 + MER58B DNA MER1_type 168 337 -4 606 313 48 26 chr4 94912701 94912931 -89375731 + MIR SINE MIR 20 254 -8 706 258 210 49 chr4 94913381 94913928 -89374734 - MER20B DNA MER1_type 0 783 149 324 287 0 32 chr4 94914082 94914176 -89374486 - MER5A DNA MER1_type -94 95 5 757 82 8 33 chr4 94914186 94914308 -89374354 - L1MA5 LINE L1 -20 6280 6162 786 139 192 0 chr4 94914353 94914525 -89374137 - MER3 DNA MER1_type 0 209 5 538 290 0 27 chr4 94914752 94914938 -89373724 + MER112 DNA MER1_type 2 182 -78 945 184 7 0 chr4 94914939 94915091 -89373571 - FAM SINE Alu -23 162 10 180 111 0 0 chr4 94915094 94915121 -89373541 + (TTC)n Simple_repeat Simple_repeat 2 28 0 265 277 223 0 chr4 94915753 94915847 -89372815 - L2 LINE L2 0 3313 3199 253 308 37 19 chr4 94915886 94915993 -89372669 - L2 LINE L2 -20 3293 3185 1199 182 5 5 chr4 94916049 94916252 -89372410 - AluJo SINE Alu -106 206 4 2403 55 10 0 chr4 94916582 94916905 -89371757 - AluY SINE Alu 0 326 1 1032 166 47 130 chr4 94916941 94916993 -89371669 - L1MC4 LINE L1 -8 8034 7979 2279 103 0 0 chr4 94916993 94917284 -89371378 - AluSp SINE Alu -21 292 2 1032 166 47 130 chr4 94917284 94917358 -89371304 - L1MC4 LINE L1 -63 7979 7900 678 191 15 37 chr4 94917358 94917494 -89371168 - FLAM_C SINE Alu 0 133 1 1032 166 47 130 chr4 94917494 94917614 -89371048 - L1MC4 LINE L1 -142 7900 7824 2236 94 0 7 chr4 94917614 94917912 -89370750 - AluSc SINE Alu -13 296 1 1032 166 47 130 chr4 94917912 94918025 -89370637 - L1MC4 LINE L1 -218 7824 7703 736 187 32 0 chr4 94918201 94918324 -89370338 - AluJb SINE Alu -185 127 1 2195 92 41 0 chr4 94918379 94918671 -89369991 + AluSp SINE Alu 1 304 -9 1534 164 99 29 chr4 94919026 94919458 -89369204 - LTR10A LTR ERV1 0 609 97 214 223 11 43 chr4 94919700 94919794 -89368868 + T-rich Low_complexity Low_complexity 4 94 0 578 139 93 9 chr4 94919803 94919911 -89368751 - FLAM_C SINE Alu -15 118 2 2187 114 0 29 chr4 94920247 94920562 -89368100 - AluSp SINE Alu -7 306 1 21 0 0 0 chr4 94920710 94920731 -89367931 + AT_rich Low_complexity Low_complexity 1 21 0 1774 152 0 54 chr4 94920872 94921188 -89367474 - AluJb SINE Alu -13 299 1 248 224 48 80 chr4 94921234 94921359 -89367303 - MLT1L LTR MaLR -3 612 492 312 276 87 41 chr4 94921411 94921607 -89367055 - MLT1L LTR MaLR -221 394 190 259 227 0 45 chr4 94921664 94921730 -89366932 - MLT1L LTR MaLR -552 63 1 434 288 78 41 chr4 94921906 94922177 -89366485 - L1MC4a LINE L1 -1876 5932 5652 773 241 167 72 chr4 94922348 94922842 -89365820 - L2 LINE L2 -1 3312 2776 402 259 63 92 chr4 94922866 94923074 -89365588 - L1MC4a LINE L1 -701 5463 5265 807 189 89 6 chr4 94923276 94923456 -89365206 + MIR SINE MIR 63 257 -5 411 335 107 29 chr4 94923752 94924062 -89364600 - HAL1 LINE L1 -1058 1449 1116 2100 120 0 3 chr4 94924584 94924884 -89363778 - AluSx SINE Alu 0 312 14 259 306 22 55 chr4 94925175 94925358 -89363304 - HAL1b LINE L1 -736 612 436 733 197 97 97 chr4 94925368 94925466 -89363196 - Zaphod DNA AcHobo 0 4031 3934 1832 165 23 3 chr4 94925466 94925769 -89362893 + AluJb SINE Alu 1 309 -3 733 197 97 97 chr4 94925769 94925969 -89362693 - Zaphod DNA AcHobo -96 3935 3733 2380 82 3 0 chr4 94926077 94926382 -89362280 - AluSp SINE Alu -7 306 1 369 0 0 0 chr4 94926470 94926511 -89362151 + (TG)n Simple_repeat Simple_repeat 2 42 0 763 110 9 0 chr4 94926512 94926621 -89362041 - FRAM SINE Alu -24 152 43 777 183 133 22 chr4 94926663 94927030 -89361632 - Zaphod DNA AcHobo -3059 972 565 227 263 53 9 chr4 94927192 94927306 -89361356 - L1MC5 LINE L1 -579 7382 7264 291 243 47 19 chr4 94927334 94927441 -89361221 - L1MC4 LINE L1 -658 7384 7275 303 203 76 0 chr4 94927741 94927820 -89360842 + L1MC4a LINE L1 6048 6132 -1676 405 310 75 0 chr4 94928088 94928262 -89360400 + L1MC4a LINE L1 6480 6666 -1142 732 296 164 16 chr4 94928322 94928694 -89359968 + L2 LINE L2 1105 1531 -1783 269 264 69 0 chr4 94928705 94928777 -89359885 + L2 LINE L2 1727 1803 -1511 1503 251 58 6 chr4 94928782 94929279 -89359383 - L1ME3 LINE L1 -83 6079 5557 198 0 0 0 chr4 94929288 94929310 -89359352 + (T)n Simple_repeat Simple_repeat 1 22 0 554 260 122 37 chr4 94929562 94929941 -89358721 + MLT1J LTR MaLR 79 426 -20 1094 241 49 63 chr4 94930905 94931411 -89357251 + LTR33 LTR ERVL 23 521 0 205 73 24 24 chr4 94931675 94931716 -89356946 + (TC)n Simple_repeat Simple_repeat 1 41 0 180 111 0 0 chr4 94931716 94931743 -89356919 + (TG)n Simple_repeat Simple_repeat 2 28 0 2858 254 82 46 chr4 94931756 94932106 -89356556 - L1MC4 LINE L1 -124 7918 7582 785 123 43 0 chr4 94932106 94932244 -89356418 - L1MC1 LINE L1 0 6333 6190 2858 254 82 46 chr4 94932244 94933354 -89355308 - L1MC4 LINE L1 -460 7582 6405 2339 137 16 58 chr4 94933371 94933803 -89354859 - MLT2D LTR ERVL 0 414 1 303 71 0 0 chr4 94934681 94934723 -89353939 + (CA)n Simple_repeat Simple_repeat 2 43 0 301 350 115 0 chr4 94935231 94935474 -89353188 + L2 LINE L2 2825 3095 -177 226 190 86 0 chr4 94935993 94936051 -89352611 + L2 LINE L2 3210 3272 0 25 0 0 0 chr4 94936195 94936220 -89352442 + AT_rich Low_complexity Low_complexity 1 25 0 473 214 34 0 chr4 94936464 94936581 -89352081 + L1ME LINE L1 5435 5555 -611 1113 212 150 23 chr4 94936602 94936988 -89351674 + MSTB2 LTR MaLR 23 457 0 303 296 55 19 chr4 94937080 94937337 -89351325 + L1M4 LINE L1 3883 4148 -1998 1316 159 39 0 chr4 94937337 94937545 -89351117 - AluJb SINE Alu -11 301 86 21 0 0 0 chr4 94937556 94937577 -89351085 + AT_rich Low_complexity Low_complexity 1 21 0 1103 294 43 17 chr4 94937578 94937916 -89350746 + L1M4 LINE L1 4160 4488 -1658 1511 172 80 25 chr4 94937916 94938242 -89350420 - MER2 DNA MER2_type 0 344 1 1103 294 43 17 chr4 94938242 94938559 -89350103 + L1M4 LINE L1 4488 4832 -1314 370 125 94 0 chr4 94938653 94938717 -89349945 - AluJb SINE Alu -147 155 86 284 313 8 8 chr4 94938740 94938871 -89349791 + L1M4 LINE L1 4151 4281 -1865 2055 119 6 10 chr4 94939349 94939660 -89349002 + AluSq SINE Alu 1 310 -3 2180 95 7 0 chr4 94939699 94940003 -89348659 - AluY SINE Alu -5 306 1 224 278 172 15 chr4 94940394 94940592 -89348070 - MIR SINE MIR 0 262 34 509 283 7 29 chr4 94940989 94941127 -89347535 + MIR3 SINE MIR 24 158 -50 417 86 0 0 chr4 94941207 94941265 -89347397 + (TTC)n Simple_repeat Simple_repeat 3 60 0 1517 164 56 14 chr4 94941267 94941433 -89347229 - AluJo SINE Alu -13 299 115 207 0 0 0 chr4 94941433 94941456 -89347206 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1517 164 56 14 chr4 94941456 94941576 -89347086 - AluJo SINE Alu -197 115 1 297 227 52 10 chr4 94942094 94942191 -89346471 - MER104 DNA Tc2 -65 115 15 1765 168 3 23 chr4 94942935 94943239 -89345423 - AluJo SINE Alu -14 298 1 357 264 93 33 chr4 94943377 94943559 -89345103 - MLT1L LTR MaLR -290 325 133 206 328 0 0 chr4 94943892 94943956 -89344706 + L2 LINE L2 2694 2757 -557 278 241 138 43 chr4 94944037 94944153 -89344509 + L2 LINE L2 2933 3059 -213 450 322 72 14 chr4 94944203 94944411 -89344251 + L2 LINE L2 2611 2830 -484 217 282 0 51 chr4 94944463 94944541 -89344121 + L2 LINE L2 2914 2987 -285 1884 218 47 90 chr4 94944858 94945580 -89343082 - LTR8 LTR ERV1 0 691 1 392 292 67 0 chr4 94946514 94946634 -89342028 - MER94 DNA DNA 0 134 7 286 179 64 0 chr4 94948692 94948770 -89339892 - L1ME2 LINE L1 0 6164 6082 22 70 0 0 chr4 94948788 94948831 -89339831 + AT_rich Low_complexity Low_complexity 1 43 0 458 197 7 44 chr4 94948881 94949018 -89339644 + L1MEd LINE L1 965 1096 -5023 3647 162 24 86 chr4 94949021 94950011 -89338651 + L1MB7 LINE L1 5256 6184 0 16623 33 1 0 chr4 94950204 94952305 -89336357 - L1PA3 LINE L1 -796 5350 3248 7026 29 0 0 chr4 94952305 94953125 -89335537 + L1PA3 LINE L1 5335 6155 0 364 234 0 0 chr4 94953694 94953771 -89334891 - L1ME LINE L1 -610 5556 5480 374 321 37 5 chr4 94953862 94954077 -89334585 + L1ME4a LINE L1 5631 5852 -310 953 83 0 70 chr4 94954094 94954220 -89334442 - L1PA16 LINE L1 -4 6162 6048 3361 65 18 2 chr4 94954220 94954654 -89334008 + MLT2A1 LTR ERVL 1 441 -3 953 83 0 70 chr4 94954654 94954684 -89333978 - L1PA16 LINE L1 -118 6048 6017 942 195 15 24 chr4 94955003 94955208 -89333454 - MLT1B LTR MaLR -187 203 1 1151 304 145 45 chr4 94955214 94955848 -89332814 - L2 LINE L2 -954 2360 1790 2486 78 0 19 chr4 94955848 94956167 -89332495 + AluSq SINE Alu 1 313 0 1151 304 145 45 chr4 94956167 94956617 -89332045 - L2 LINE L2 -1524 1790 1168 934 258 59 56 chr4 94956629 94957055 -89331607 - MLT1J2 LTR MaLR -22 428 2 486 271 25 0 chr4 94957075 94957193 -89331469 - MIR SINE MIR -132 130 10 1876 143 50 0 chr4 94957294 94957574 -89331088 + AluJo SINE Alu 1 294 -18 941 192 33 28 chr4 94957587 94957801 -89330861 + MLT1A1 LTR MaLR 99 313 -52 599 258 53 47 chr4 94957819 94958009 -89330653 + MIR SINE MIR 2 192 -70 456 19 0 0 chr4 94958508 94958561 -89330101 + (TCCA)n Simple_repeat Simple_repeat 4 56 0 23 33 0 0 chr4 94958640 94958670 -89329992 + AT_rich Low_complexity Low_complexity 1 30 0 1846 149 0 77 chr4 94958933 94959269 -89329393 - AluJb SINE Alu -2 310 1 1997 130 3 10 chr4 94959394 94959695 -89328967 + AluSx SINE Alu 1 299 -13 594 276 69 58 chr4 94960124 94960793 -89327869 - L1ME3A LINE L1 -237 5933 5268 736 200 7 0 chr4 94961769 94961909 -89326753 + FLAM_C SINE Alu 1 141 -2 2290 92 0 13 chr4 94962168 94962471 -89326191 + AluY SINE Alu 1 299 -12 210 71 0 0 chr4 94962603 94962631 -89326031 + (ATG)n Simple_repeat Simple_repeat 3 30 0 233 238 59 30 chr4 94962794 94962895 -89325767 + L1ME4a LINE L1 6017 6120 -1 693 280 108 36 chr4 94962984 94963427 -89325235 + L1ME4a LINE L1 5295 5769 -352 1827 179 0 10 chr4 94963429 94963742 -89324920 + AluJb SINE Alu 3 312 0 21 36 0 0 chr4 94963800 94963828 -89324834 + AT_rich Low_complexity Low_complexity 1 28 0 311 263 46 103 chr4 94963935 94964129 -89324533 + L1ME4a LINE L1 5939 6121 0 244 311 119 13 chr4 94964232 94964383 -89324279 + MIR SINE MIR 26 192 -70 245 261 29 0 chr4 94964398 94964467 -89324195 - MER115 DNA AcHobo -2 691 621 * 895 230 6 76 chr4 94964459 94964816 -89323846 - Zaphod DNA AcHobo -103 3928 3597 360 157 69 74 chr4 94964818 94965034 -89323628 - Zaphod DNA AcHobo -3043 988 774 5004 112 41 0 chr4 94965034 94965819 -89322843 - L1PA16 LINE L1 -15 6151 5335 387 204 25 80 chr4 94965839 94965931 -89322731 - Zaphod DNA AcHobo -3240 791 710 2394 88 0 0 chr4 94965931 94966226 -89322436 + AluSx SINE Alu 2 296 -16 387 204 25 80 chr4 94966226 94966295 -89322367 - Zaphod DNA AcHobo -3321 710 639 736 237 57 7 chr4 94966305 94966644 -89322018 - Charlie1 DNA MER1_type -6 2755 3 * 1172 219 25 0 chr4 94966644 94966908 -89321754 - Zaphod DNA AcHobo -3417 614 344 21 0 0 0 chr4 94968982 94969003 -89319659 + AT_rich Low_complexity Low_complexity 1 21 0 181 68 45 45 chr4 94969200 94969244 -89319418 + A-rich Low_complexity Low_complexity 4 47 0 2372 50 0 3 chr4 94970556 94970876 -89317786 + AluY SINE Alu 1 319 0 424 311 24 24 chr4 94971391 94971555 -89317107 + MIR3 SINE MIR 42 205 -3 234 291 18 73 chr4 94972879 94972989 -89315673 + L2 LINE L2 3169 3272 0 396 328 85 8 chr4 94973022 94973269 -89315393 - L1ME LINE L1 -470 5651 5386 235 188 21 0 chr4 94973274 94973322 -89315340 + (TA)n Simple_repeat Simple_repeat 1 49 0 677 279 81 48 chr4 94973438 94974079 -89314583 - L1ME LINE L1 -1829 4317 3656 1034 143 51 11 chr4 94974542 94974717 -89313945 + MSTD LTR MaLR 215 396 0 209 204 0 37 chr4 94974974 94975028 -89313634 + CT-rich Low_complexity Low_complexity 3 54 0 3218 105 53 4 chr4 94975893 94976368 -89312294 - L1PA13 LINE L1 -219 5942 5445 1282 142 32 20 chr4 94976368 94976595 -89312067 + L1PA13 LINE L1 5914 6163 0 212 234 109 0 chr4 94978170 94978234 -89310428 - MIR SINE MIR -126 136 66 392 309 72 19 chr4 94979850 94980057 -89308605 - MIR SINE MIR 0 262 45 272 293 109 13 chr4 94980374 94980613 -89308049 - L1ME4a LINE L1 -14 6107 5846 634 296 57 10 chr4 94980643 94980940 -89307722 - L1ME4a LINE L1 -344 5777 5467 201 237 0 0 chr4 94981085 94981123 -89307539 + (ATG)n Simple_repeat Simple_repeat 2 39 0 540 0 0 0 chr4 94981147 94981207 -89307455 + (TA)n Simple_repeat Simple_repeat 1 60 0 383 331 50 6 chr4 94981270 94981451 -89307211 + MIR SINE MIR 53 241 -21 2310 174 27 12 chr4 94981776 94982184 -89306478 + MER41D LTR ERV1 130 543 -14 2835 3 0 0 chr4 94982184 94982489 -89306173 - AluYa5 SINE Alu -6 305 1 266 310 0 0 chr4 94982695 94982766 -89305896 + MER41D-int LTR ERV1 317 387 -7369 1460 135 29 33 chr4 94982903 94983177 -89305485 + MER41D-int LTR ERV1 941 1213 -573 831 137 14 0 chr4 94983172 94983311 -89305351 + MER41D-int LTR ERV1 1506 1646 -6474 * 2553 174 62 66 chr4 94983835 94985070 -89303592 + MER41D-int LTR ERV1 1722 4175 -2156 401 217 39 106 chr4 94985205 94985385 -89303277 + MER4D-int LTR ERV1 3786 3953 -4167 483 196 105 0 chr4 94985465 94985593 -89303069 + MER4D-int LTR ERV1 4167 6134 -624 1133 197 61 67 chr4 94985598 94985928 -89302734 + MER4D-int LTR ERV1 6384 6711 -47 768 205 37 70 chr4 94985969 94986184 -89302478 + MER4D LTR ERV1 10 217 -686 4709 97 35 10 chr4 94986209 94986924 -89301738 - L1PB2 LINE L1 -2 6149 5417 240 35 0 0 chr4 94986926 94986955 -89301707 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2208 105 0 3 chr4 94986955 94987241 -89301421 - AluSx SINE Alu -27 285 1 564 122 12 0 chr4 94987242 94987324 -89301338 + MER49 LTR ERV1 208 290 -633 * 639 140 28 0 chr4 94987303 94987410 -89301252 + MER49 LTR ERV1 610 719 -204 1069 180 22 31 chr4 94987420 94987642 -89301020 + MER41D-int LTR ERV1 4609 4828 -1848 2403 223 12 16 chr4 94988095 94988597 -89300065 + MER41D-int LTR ERV1 6121 6620 -56 259 163 0 0 chr4 94988659 94988702 -89299960 + MER41D-int LTR ERV1 7111 7153 -52 * 327 123 164 0 chr4 94988665 94988738 -89299924 + HERVK14 LTR ERVK 5671 5755 -190 568 78 0 0 chr4 94988739 94988816 -89299846 + MER41D LTR ERV1 1 77 -480 30 59 0 0 chr4 94989022 94989073 -89299589 + AT_rich Low_complexity Low_complexity 1 51 0 563 0 15 0 chr4 94989841 94989908 -89298754 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 269 274 162 17 chr4 94990540 94990657 -89298005 - MIR SINE MIR -6 256 123 206 329 29 14 chr4 94991065 94991135 -89297527 + L2 LINE L2 3008 3078 -194 231 135 0 0 chr4 94991660 94991697 -89296965 + U3 snRNA snRNA 3 39 -178 451 279 30 55 chr4 94991773 94991974 -89296688 + L2 LINE L2 3115 3310 -3 2515 57 3 0 chr4 94992088 94992387 -89296275 + AluY SINE Alu 3 302 -9 355 23 0 0 chr4 94992732 94992776 -89295886 + L1PA6 LINE L1 6105 6148 -6 799 202 66 14 chr4 94993412 94993625 -89295037 - MER5C DNA MER1_type 0 324 101 2006 206 83 7 chr4 94994691 94995127 -89293535 + MLT1F LTR MaLR 72 540 -2 1040 213 91 89 chr4 94995237 94995598 -89293064 - MSTD LTR MaLR 0 396 35 774 330 56 43 chr4 94996174 94996265 -89292397 - HERV16 LTR ERVL -2995 2001 1913 1718 182 0 11 chr4 94996265 94996584 -89292078 + AluJo SINE Alu 1 316 0 774 330 56 43 chr4 94996584 94997530 -89291132 - HERV16 LTR ERVL -3083 1913 880 5898 144 8 12 chr4 94997685 94998700 -89289962 - L1MA3 LINE L1 0 6305 5296 455 99 0 0 chr4 94998710 94998781 -89289881 - L1PB3 LINE L1 -2 6209 6139 3039 149 45 4 chr4 94998790 94999299 -89289363 - MER41B LTR ERV1 -88 547 18 7123 99 5 22 chr4 94999323 95000378 -89288284 - MER41B-int LTR ERV1 0 5946 4910 10879 185 16 14 chr4 95000378 95003150 -89285512 - L1PB3 LINE L1 -161 6050 3278 2150 137 13 0 chr4 95003150 95003456 -89285206 - AluSx SINE Alu -2 310 1 10879 185 16 14 chr4 95003456 95003884 -89284778 - L1PB3 LINE L1 -2933 3278 2852 6834 39 1 0 chr4 95003866 95004682 -89283980 - L1PA5 LINE L1 0 6154 5338 * 35847 66 31 1 chr4 95004673 95009473 -89279189 - L1PA5 LINE L1 -764 5382 439 6505 158 44 25 chr4 95009528 95010142 -89278520 - L1PB3 LINE L1 -3357 2846 2245 1886 160 3 0 chr4 95010142 95010429 -89278233 - AluJb SINE Alu -24 288 1 6505 158 44 25 chr4 95010429 95012591 -89276071 - L1PB3 LINE L1 -3958 2245 1 3784 296 38 22 chr4 95012599 95014077 -89274585 - L1PBa LINE L1 -5360 1503 3 1838 196 10 7 chr4 95014089 95014497 -89274165 - L1 LINE L1 -813 5333 4925 1324 227 0 0 chr4 95014498 95014758 -89273904 - AluJb SINE Alu -15 297 38 708 111 7 78 chr4 95014763 95014858 -89273804 - L1PA15 LINE L1 0 6165 6084 266 24 73 0 chr4 95014858 95014899 -89273763 + (TTATA)n Simple_repeat Simple_repeat 5 48 0 708 111 7 78 chr4 95014899 95014956 -89273706 - L1PA15 LINE L1 -81 6084 6024 * 6985 71 8 11 chr4 95014951 95016613 -89272049 - L1PA8 LINE L1 -3 6169 4511 1797 69 0 4 chr4 95016620 95016853 -89271809 - L1PA6 LINE L1 -11 6143 5912 3174 93 9 2 chr4 95016853 95017302 -89271360 - L1PA8 LINE L1 -1623 4523 4072 * 6301 185 21 25 chr4 95017297 95018516 -89270146 - L1PA15 LINE L1 -126 6039 4816 2060 189 57 68 chr4 95018516 95019076 -89269586 + MLT2B3 LTR ERVL 1 554 0 6301 185 21 25 chr4 95019076 95019743 -89268919 - L1PA15 LINE L1 -1349 4816 4027 2405 94 3 0 chr4 95019743 95020042 -89268620 - AluSp SINE Alu -13 300 1 6301 185 21 25 chr4 95020042 95020169 -89268493 - L1PA15 LINE L1 -2138 4027 3901 3544 107 4 6 chr4 95020169 95020681 -89267981 - MER9 LTR ERVK 0 511 1 7181 103 6 9 chr4 95020683 95022114 -89266548 - HERVK9 LTR ERVK -2 8033 4583 2536 65 0 0 chr4 95022115 95022455 -89266207 - HERVK9 LTR ERVK -1976 3940 3601 * 8087 70 0 0 chr4 95022452 95023512 -89265150 - HERVK9 LTR ERVK -3433 2483 1424 3508 103 34 21 chr4 95023510 95024071 -89264591 - HERVK9 LTR ERVK -5348 568 1 * 3693 100 2 4 chr4 95024071 95024583 -89264079 - MER9 LTR ERVK 0 511 1 2888 219 0 4 chr4 95024584 95025266 -89263396 - L1PA15 LINE L1 -2241 3905 3227 14145 75 4 2 chr4 95025287 95027188 -89261474 - HERVL LTR ERVL -1934 3720 1817 1697 101 19 26 chr4 95027188 95027456 -89261206 - AluY SINE Alu -4 307 42 1186 97 113 21 chr4 95027457 95027643 -89261019 - AluSp SINE Alu -106 207 5 539 217 101 8 chr4 95027669 95027798 -89260864 - FRAM SINE Alu -8 168 28 790 162 21 7 chr4 95027799 95027941 -89260721 - MER30 DNA MER1_type 0 230 87 642 158 44 9 chr4 95027949 95028063 -89260599 - FLAM_C SINE Alu -15 118 1 1442 161 110 0 chr4 95028096 95028351 -89260311 - AluJb SINE Alu -9 303 21 1506 228 29 40 chr4 95028352 95028800 -89259862 - L1ME LINE L1 -449 5717 5275 2102 110 0 0 chr4 95028824 95029115 -89259547 - AluSg SINE Alu -19 291 1 1923 171 0 9 chr4 95029136 95029451 -89259211 + AluJb SINE Alu 1 312 0 500 156 13 0 chr4 95029566 95029643 -89259019 - FRAM/FAM SINE Alu -99 77 1 517 214 122 20 chr4 95029647 95029843 -89258819 - L1ME LINE L1 -1742 4404 4189 13347 78 5 0 chr4 95029853 95031654 -89257008 - HERVL-A2 LTR ERVL -3844 1810 1 3280 75 11 39 chr4 95031654 95031720 -89256942 - MLT2A2 LTR ERVL 0 453 387 222 37 0 0 chr4 95031720 95031747 -89256915 + (CA)n Simple_repeat Simple_repeat 2 28 0 3280 75 11 39 chr4 95031747 95032146 -89256516 - MLT2A2 LTR ERVL -66 387 1 2699 211 4 0 chr4 95032146 95032796 -89255866 - L1PA15 LINE L1 -3820 2326 1674 2082 175 86 2 chr4 95032796 95033191 -89255471 - MSTA LTR MaLR 0 428 1 1686 164 0 3 chr4 95033191 95033484 -89255178 - MSTA-int LTR MaLR 0 1651 1360 310 305 19 35 chr4 95033544 95033780 -89254882 - LTR16C LTR ERVL -135 356 73 1129 170 9 49 chr4 95034025 95034249 -89254413 - AluJo SINE Alu -12 300 86 265 245 151 9 chr4 95039202 95039308 -89249354 - MER20 DNA MER1_type 0 219 99 233 361 197 0 chr4 95040639 95040847 -89247815 + MIR SINE MIR 2 250 -12 229 278 0 0 chr4 95040849 95040921 -89247741 + (TAA)n Simple_repeat Simple_repeat 2 73 0 201 39 0 0 chr4 95042329 95042355 -89246307 + (TC)n Simple_repeat Simple_repeat 1 26 0 277 291 345 5 chr4 95042605 95042811 -89245851 + L2 LINE L2 3037 3312 -1 29 0 0 0 chr4 95044183 95044212 -89244450 + AT_rich Low_complexity Low_complexity 1 29 0 293 232 30 10 chr4 95044351 95044450 -89244212 - L1MC4a LINE L1 -1889 5919 5819 2068 212 71 58 chr4 95044556 95045164 -89243498 + MLT1E2 LTR MaLR 11 626 0 496 328 43 23 chr4 95045164 95045396 -89243266 - L1MC4a LINE L1 -2144 5664 5423 1340 156 68 14 chr4 95045396 95045691 -89242971 - L1MA7 LINE L1 0 6291 5981 496 328 43 23 chr4 95045691 95045760 -89242902 - L1MC4a LINE L1 -2385 5423 5357 180 176 0 0 chr4 95045760 95045794 -89242868 + (TA)n Simple_repeat Simple_repeat 2 35 0 272 321 22 16 chr4 95046017 95046201 -89242461 - L1MC4a LINE L1 -1059 5087 4903 1790 185 0 10 chr4 95047150 95047458 -89241204 + AluJo SINE Alu 1 305 -7 332 265 22 0 chr4 95047622 95047723 -89240939 + MIR SINE MIR 39 141 -67 691 201 7 65 chr4 95048444 95048598 -89240064 + MER5B DNA MER1_type 28 172 -6 463 195 11 0 chr4 95048601 95048688 -89239974 - AluJo SINE Alu -224 88 1 329 185 217 0 chr4 95048716 95048808 -89239854 + MIR3 SINE MIR 77 188 -20 22 0 0 0 chr4 95048933 95048955 -89239707 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr4 95049177 95049200 -89239462 + (T)n Simple_repeat Simple_repeat 1 23 0 2328 96 3 0 chr4 95049606 95049897 -89238765 + AluSg SINE Alu 1 292 -18 2648 138 25 20 chr4 95049897 95050075 -89238587 - L1MA4A LINE L1 -26 6277 6101 2493 63 0 3 chr4 95050075 95050377 -89238285 - AluY SINE Alu -10 301 1 2648 138 25 20 chr4 95050377 95050789 -89237873 - L1MA4A LINE L1 -202 6101 5623 297 353 104 20 chr4 95050999 95051248 -89237414 + L2 LINE L2 2123 2392 -922 192 351 125 58 chr4 95051594 95051939 -89236723 + L2 LINE L2 2819 3186 -86 1486 244 102 36 chr4 95052914 95053267 -89235395 - L1M4 LINE L1 -2222 4160 3832 1841 196 0 0 chr4 95053267 95053568 -89235094 - AluJb SINE Alu -11 301 1 1486 244 102 36 chr4 95053568 95053813 -89234849 - L1M4 LINE L1 -2550 3832 3604 2143 119 0 7 chr4 95053813 95054115 -89234547 - AluSq SINE Alu -13 300 1 1486 244 102 36 chr4 95054115 95054309 -89234353 - L1M4 LINE L1 -2778 3604 3315 2199 122 0 7 chr4 95054622 95054918 -89233744 + AluSx SINE Alu 1 294 -18 284 325 60 8 chr4 95054955 95055072 -89233590 + MIR3 SINE MIR 75 197 -11 14371 34 1 1 chr4 95056121 95058633 -89230029 - L1PA3 LINE L1 -3 6152 3641 4530 178 19 23 chr4 95058637 95058680 -89229982 - L1M2 LINE L1 -707 5584 5542 2168 77 0 28 chr4 95058680 95058965 -89229697 + AluY SINE Alu 20 296 -15 4530 178 19 23 chr4 95058965 95060194 -89228468 - L1M2 LINE L1 -749 5542 4316 * 23347 103 12 3 chr4 95060189 95064653 -89224009 - L1PA7 LINE L1 -2 6152 1657 6691 51 30 0 chr4 95064653 95065515 -89223147 + MER11D LTR ERVK 3 890 -7 1465 157 7 0 chr4 95065515 95065789 -89222873 - L1PA7 LINE L1 -4489 1657 1382 * 2049 265 33 46 chr4 95065758 95066330 -89222332 - L1M4 LINE L1 -3179 2967 2389 2162 111 0 13 chr4 95066330 95066628 -89222034 - AluSq SINE Alu -19 294 1 2049 265 33 46 chr4 95066628 95067221 -89221441 - L1M4 LINE L1 -3757 2389 1799 263 93 23 0 chr4 95067307 95067350 -89221312 + Alu SINE Alu 1 44 -259 258 370 0 19 chr4 95067376 95067484 -89221178 + MIR3 SINE MIR 89 194 -14 287 367 0 10 chr4 95067880 95067978 -89220684 - MER5A DNA MER1_type -1 188 92 285 271 106 72 chr4 95068790 95069127 -89219535 - L1MC4a LINE L1 -83 6038 5689 345 367 84 53 chr4 95069149 95069599 -89219063 + L2 LINE L2 2804 3267 -5 236 186 128 23 chr4 95069627 95069713 -89218949 - L1MC4a LINE L1 -466 5655 5561 321 269 103 47 chr4 95069720 95069970 -89218692 - L1MC4a LINE L1 -654 5520 5255 13896 107 7 16 chr4 95070234 95072784 -89215878 - L1P LINE L1 -3619 2527 11 2401 165 29 5 chr4 95073098 95073516 -89215146 - MSTA LTR MaLR 0 428 1 321 234 298 16 chr4 95073523 95073711 -89214951 - L1ME4a LINE L1 -1 6120 5880 6419 134 6 6 chr4 95073726 95075130 -89213532 - L1MA2 LINE L1 0 6304 4899 27793 122 12 57 chr4 95075271 95081714 -89206948 - L1PA7 LINE L1 -6 6148 2 339 300 70 35 chr4 95081719 95081935 -89206727 - L1ME4a LINE L1 -323 5798 5573 492 56 111 0 chr4 95082050 95082122 -89206540 - MADE1 DNA Mariner 0 80 1 2206 125 0 3 chr4 95082148 95082461 -89206201 - AluSq SINE Alu -1 312 1 393 323 129 43 chr4 95082461 95082828 -89205834 - L1ME4a LINE L1 -694 5427 5093 2102 137 0 13 chr4 95082828 95083134 -89205528 - AluSq SINE Alu -11 302 1 393 323 129 43 chr4 95083134 95083408 -89205254 - L1ME4a LINE L1 -1028 5093 4733 2016 135 20 3 chr4 95083691 95084040 -89204622 + L1MA2 LINE L1 5950 6304 0 335 291 177 27 chr4 95084085 95084282 -89204380 - L1ME4a LINE L1 -3 6118 5883 1903 162 146 8 chr4 95084282 95084658 -89204004 - MSTA LTR MaLR 0 428 1 335 291 177 27 chr4 95084658 95084680 -89203982 - L1ME4a LINE L1 -238 5883 5866 328 287 30 0 chr4 95084716 95084817 -89203845 - L1ME4a LINE L1 -2010 5798 5695 2249 163 66 0 chr4 95084842 95085234 -89203428 - MER47B DNA MER2_type 0 418 1 759 307 27 23 chr4 95086563 95086820 -89201842 + MIR SINE MIR 5 262 0 484 299 25 70 chr4 95087090 95087149 -89201513 + L2 LINE L2 1159 1219 -2095 1328 193 93 25 chr4 95087149 95087470 -89201192 + MER2 DNA MER2_type 1 343 -1 484 299 25 70 chr4 95087470 95087654 -89201008 + L2 LINE L2 1219 1391 -1923 315 219 164 62 chr4 95087761 95087889 -89200773 + L2 LINE L2 3173 3313 0 5346 43 1 38 chr4 95088033 95088738 -89199924 - L1PA7 LINE L1 0 6154 5476 5928 74 1 5 chr4 95088744 95089567 -89199095 - L1PA7 LINE L1 -18 6136 5317 301 329 33 47 chr4 95089722 95089935 -89198727 - L2 LINE L2 -219 3053 2844 471 307 245 7 chr4 95090052 95090462 -89198200 - L2 LINE L2 -26 3287 2781 196 250 0 0 chr4 95090462 95090502 -89198160 - L2 LINE L2 -499 2815 2776 28699 115 9 62 chr4 95090503 95093592 -89195070 - L1PA6 LINE L1 0 6154 3597 1797 174 0 22 chr4 95093592 95093903 -89194759 - AluY SINE Alu -7 304 1 28699 115 9 62 chr4 95093903 95097309 -89191353 - L1PA6 LINE L1 -2557 3597 12 667 163 5 10 chr4 95097873 95098009 -89190653 + MLT1C LTR MaLR 237 467 0 1280 133 0 0 chr4 95098314 95098494 -89190168 - AluSx SINE Alu -132 180 1 396 318 16 16 chr4 95098780 95098906 -89189756 - MIR SINE MIR -109 153 28 346 198 129 0 chr4 95098973 95099074 -89189588 - MIR SINE MIR -2 260 147 485 299 55 46 chr4 95100971 95101186 -89187476 + MIR SINE MIR 44 262 0 1544 185 43 4 chr4 95101476 95101757 -89186905 - AluJb SINE Alu -20 292 1 13139 105 14 5 chr4 95101807 95103774 -89184888 - L1P LINE L1 -4160 1986 1 1671 201 0 3 chr4 95104316 95104620 -89184042 - AluJb SINE Alu -9 303 1 245 343 79 17 chr4 95104725 95104903 -89183759 - L1MC/D LINE L1 -2092 5716 5528 371 316 65 0 chr4 95104905 95105060 -89183602 - L1MC/D LINE L1 -780 5462 5298 2277 114 0 7 chr4 95105082 95105389 -89183273 + AluSc SINE Alu 1 305 -4 207 0 0 0 chr4 95105556 95105579 -89183083 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2081 124 0 0 chr4 95105582 95105864 -89182798 - AluSx SINE Alu -23 289 8 1436 193 67 6 chr4 95106229 95106560 -89182102 + MLT1A1 LTR MaLR 15 365 0 911 268 99 30 chr4 95106563 95107108 -89181554 + MLT1E3 LTR MaLR 3 624 0 740 225 68 45 chr4 95107801 95108145 -89180517 + MSTD LTR MaLR 1 396 0 210 37 0 0 chr4 95108263 95108290 -89180372 + (TC)n Simple_repeat Simple_repeat 2 28 0 424 123 0 0 chr4 95108290 95108355 -89180307 - AluS SINE Alu -20 292 228 211 234 0 0 chr4 95108646 95108693 -89179969 + (TA)n Simple_repeat Simple_repeat 2 48 0 24 0 0 0 chr4 95109192 95109216 -89179446 + AT_rich Low_complexity Low_complexity 1 24 0 368 302 89 15 chr4 95110008 95110210 -89178452 - MIR SINE MIR -1 261 45 24 0 0 0 chr4 95110483 95110507 -89178155 + AT_rich Low_complexity Low_complexity 1 24 0 826 261 104 31 chr4 95110546 95111093 -89177569 - L1ME4a LINE L1 -51 6070 5484 285 151 0 0 chr4 95111256 95111309 -89177353 + (ATG)n Simple_repeat Simple_repeat 2 54 0 407 315 61 17 chr4 95111409 95111590 -89177072 + MIR SINE MIR 53 241 -21 224 271 66 49 chr4 95113404 95113526 -89175136 + L2 LINE L2 3149 3272 0 903 209 0 0 chr4 95114500 95114658 -89174004 + FRAM SINE Alu 1 158 -18 361 231 11 33 chr4 95114659 95114750 -89173912 - MIR SINE MIR -11 251 163 228 200 0 163 chr4 95115753 95115807 -89172855 + MIR3 SINE MIR 108 147 -61 599 203 144 7 chr4 95115807 95115960 -89172702 + MER5B DNA MER1_type 2 175 -3 228 200 0 163 chr4 95115960 95115985 -89172677 + MIR3 SINE MIR 147 174 -34 225 0 0 0 chr4 95116514 95116539 -89172123 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 390 249 80 1 chr4 95116678 95116775 -89171887 + MIR SINE MIR 53 146 -62 230 255 94 75 chr4 95117042 95117148 -89171514 + L2 LINE L2 3202 3309 -4 258 105 18 97 chr4 95118569 95118683 -89169979 + (TTA)n Simple_repeat Simple_repeat 1 105 0 2307 65 0 0 chr4 95118803 95119082 -89169580 + AluY SINE Alu 23 301 -10 24 53 0 0 chr4 95119085 95119123 -89169539 + AT_rich Low_complexity Low_complexity 1 38 0 417 325 9 0 chr4 95119579 95119693 -89168969 + L2 LINE L2 3149 3263 -9 262 203 0 51 chr4 95119772 95119831 -89168831 + MIR SINE MIR 78 133 -75 30 0 0 0 chr4 95120453 95120483 -89168179 + AT_rich Low_complexity Low_complexity 1 30 0 188 373 67 0 chr4 95120756 95120831 -89167831 + L2 LINE L2 3173 3252 -20 21 0 0 0 chr4 95120857 95120878 -89167784 + AT_rich Low_complexity Low_complexity 1 21 0 321 26 0 0 chr4 95121377 95121415 -89167247 + (TG)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chr4 95121841 95121864 -89166798 + AT_rich Low_complexity Low_complexity 1 23 0 2900 110 15 15 chr4 95121864 95122319 -89166343 - L1PB2 LINE L1 -1 6150 5696 285 272 22 88 chr4 95122319 95122455 -89166207 - MIR SINE MIR -59 203 77 382 308 7 35 chr4 95122545 95122688 -89165974 - MIR SINE MIR 0 262 124 308 237 13 13 chr4 95124556 95124632 -89164030 - L2 LINE L2 -11 3261 3186 269 323 30 39 chr4 95124686 95124821 -89163841 + MIR SINE MIR 44 184 -59 255 303 46 28 chr4 95124851 95124960 -89163702 + MIR SINE MIR 152 262 0 319 265 60 0 chr4 95126192 95126275 -89162387 + L2 LINE L2 3184 3271 -1 1033 182 0 0 chr4 95126371 95126563 -89162099 + L1PB1 LINE L1 8 199 -6664 14007 190 42 9 chr4 95126563 95132445 -89156217 + L1PB1 LINE L1 633 6867 0 941 196 31 36 chr4 95133156 95133380 -89155282 + MLT1D LTR MaLR 3 225 -280 296 70 0 23 chr4 95133415 95133458 -89155204 - MLT1E1 LTR MaLR 0 654 613 616 256 114 28 chr4 95134465 95134676 -89153986 - MIR SINE MIR -4 258 30 386 286 8 32 chr4 95134690 95134816 -89153846 - MIR SINE MIR 0 262 140 386 280 103 21 chr4 95134970 95135213 -89153449 - HAL1 LINE L1 -603 1904 1642 907 265 102 33 chr4 95135258 95135707 -89152955 + HAL1 LINE L1 594 1073 -1434 2302 48 7 27 chr4 95135712 95136006 -89152656 + AluY SINE Alu 4 291 -20 1943 9 0 0 chr4 95136254 95136466 -89152196 - AluYa5 SINE Alu -3 308 97 235 219 0 31 chr4 95136995 95137059 -89151603 - L1MC4a LINE L1 -1875 5933 5872 1796 179 0 3 chr4 95137100 95137391 -89151271 - AluJb SINE Alu -20 292 3 2492 40 7 3 chr4 95137429 95137729 -89150933 + AluY SINE Alu 1 301 -10 343 309 86 0 chr4 95137999 95138151 -89150511 - L1MC4a LINE L1 -2580 5462 5298 204 40 0 0 chr4 95138541 95138566 -89150096 + (TA)n Simple_repeat Simple_repeat 2 26 0 2118 119 7 0 chr4 95138962 95139257 -89149405 - AluSq SINE Alu -11 302 6 216 182 0 0 chr4 95139785 95139829 -89148833 + (TA)n Simple_repeat Simple_repeat 2 45 0 183 80 0 0 chr4 95140992 95141017 -89147645 + (TTTTC)n Simple_repeat Simple_repeat 1 25 0 510 258 106 10 chr4 95141153 95141351 -89147311 - MIR SINE MIR -1 261 45 248 230 100 10 chr4 95141669 95141685 -89146977 - HAL1b LINE L1 -8 1340 1325 929 243 121 60 chr4 95141685 95141824 -89146838 - L1ME4a LINE L1 -51 6070 5941 960 18 0 0 chr4 95141824 95141934 -89146728 + L1PA3 LINE L1 6043 6152 -3 929 243 121 60 chr4 95141934 95142363 -89146299 - L1ME4a LINE L1 -180 5941 1232 226 226 0 19 chr4 95142514 95142567 -89146095 + (ATG)n Simple_repeat Simple_repeat 3 54 0 304 348 61 19 chr4 95142615 95142847 -89145815 + MIR SINE MIR 3 241 -21 204 295 66 49 chr4 95144697 95144819 -89143843 + L2 LINE L2 3149 3272 0 998 190 0 0 chr4 95145663 95145826 -89142836 + FRAM SINE Alu 1 163 -13 378 262 10 29 chr4 95145829 95145932 -89142730 - MIR SINE MIR -6 256 156 1480 98 0 25 chr4 95145973 95146177 -89142485 - AluSg/x SINE Alu -2 308 110 241 203 68 68 chr4 95146194 95146268 -89142394 - L2 LINE L2 -4 3268 3195 21 36 0 0 chr4 95146487 95146515 -89142147 + AT_rich Low_complexity Low_complexity 1 28 0 220 175 0 163 chr4 95147166 95147220 -89141442 + MIR3 SINE MIR 108 147 -61 555 188 149 19 chr4 95147220 95147374 -89141288 + MER5B DNA MER1_type 2 175 -3 220 175 0 163 chr4 95147374 95147399 -89141263 + MIR3 SINE MIR 147 174 -34 218 243 52 184 chr4 95148055 95148191 -89140471 + MIR SINE MIR 29 146 -62 229 242 100 75 chr4 95148453 95148573 -89140089 + L2 LINE L2 3187 3309 -4 24 91 0 0 chr4 95149572 95149638 -89139024 + AT_rich Low_complexity Low_complexity 1 66 0 21 36 0 0 chr4 95150136 95150164 -89138498 + AT_rich Low_complexity Low_complexity 1 28 0 408 316 9 0 chr4 95150691 95150805 -89137857 + L2 LINE L2 3149 3263 -9 31 0 0 0 chr4 95151567 95151598 -89137064 + AT_rich Low_complexity Low_complexity 1 31 0 207 100 0 0 chr4 95152517 95152547 -89136115 + (TG)n Simple_repeat Simple_repeat 2 31 0 1925 113 7 3 chr4 95153009 95153309 -89135353 - L1PB2 LINE L1 -1 6150 5850 254 235 71 35 chr4 95154880 95154965 -89133697 - L2 LINE L2 -23 3249 3162 529 294 94 29 chr4 95154968 95155213 -89133449 + MIR SINE MIR 2 262 0 282 324 49 0 chr4 95156413 95156515 -89132147 + L2 LINE L2 3206 3312 -1 944 207 27 36 chr4 95157204 95157426 -89131236 + MLT1D LTR MaLR 1 220 -285 308 93 0 0 chr4 95157466 95157509 -89131153 - MLT1E2 LTR MaLR 0 626 584 25 31 0 0 chr4 95158493 95158525 -89130137 + AT_rich Low_complexity Low_complexity 1 32 0 573 272 99 10 chr4 95158547 95158749 -89129913 - MIR SINE MIR -10 252 33 443 182 30 30 chr4 95158799 95158898 -89129764 - MIR SINE MIR -30 232 134 449 266 91 33 chr4 95159070 95159311 -89129351 - HAL1 LINE L1 -603 1904 1650 916 277 73 33 chr4 95159363 95159789 -89128873 - HAL1 LINE L1 -1471 1036 594 22 0 0 0 chr4 95160136 95160158 -89128504 + AT_rich Low_complexity Low_complexity 1 22 0 1369 199 18 29 chr4 95160527 95160705 -89127957 - AluJb SINE Alu -22 290 115 3596 100 2 17 chr4 95160705 95161224 -89127438 - MER9 LTR ERVK 0 511 1 1369 199 18 29 chr4 95161224 95161321 -89127341 - AluJb SINE Alu -197 115 18 287 333 62 21 chr4 95161415 95161607 -89127055 - L1MC/D LINE L1 -2081 5727 5528 1554 180 72 12 chr4 95162329 95162663 -89125999 + MLT1A1 LTR MaLR 1 354 -11 1082 253 134 60 chr4 95162676 95163226 -89125436 + MLT1E3 LTR MaLR 3 624 0 2101 116 0 7 chr4 95163846 95164147 -89124515 - AluSc SINE Alu 0 309 11 1117 206 144 39 chr4 95164247 95164342 -89124320 + MSTD LTR MaLR 5 89 -307 1763 122 48 4 chr4 95164342 95164613 -89124049 + AluSx SINE Alu 1 283 -29 441 0 0 0 chr4 95164615 95164664 -89123998 + (CATA)n Simple_repeat Simple_repeat 2 50 0 1117 206 144 39 chr4 95164664 95164920 -89123742 + MSTD LTR MaLR 89 396 0 3206 107 53 4 chr4 95166075 95166550 -89122112 - L1PA13 LINE L1 -219 5942 5445 1282 142 32 20 chr4 95166550 95166777 -89121885 + L1PA13 LINE L1 5914 6163 0 228 241 52 0 chr4 95168352 95168410 -89120252 - MIR SINE MIR -71 137 77 397 309 72 19 chr4 95170032 95170239 -89118423 - MIR SINE MIR 0 262 45 272 293 109 13 chr4 95170556 95170795 -89117867 - L1ME4a LINE L1 -14 6107 5846 634 296 57 10 chr4 95170825 95171122 -89117540 - L1ME4a LINE L1 -344 5777 5467 201 237 0 0 chr4 95171267 95171305 -89117357 + (ATG)n Simple_repeat Simple_repeat 2 39 0 450 0 0 0 chr4 95171329 95171379 -89117283 + (TA)n Simple_repeat Simple_repeat 1 50 0 423 309 54 17 chr4 95171390 95171611 -89117051 + MIR SINE MIR 3 229 -33 1932 153 17 20 chr4 95173059 95173360 -89115302 + AluSx SINE Alu 1 300 -12 23 0 0 0 chr4 95173389 95173412 -89115250 + AT_rich Low_complexity Low_complexity 1 23 0 256 319 34 34 chr4 95173722 95173841 -89114821 + L2 LINE L2 3149 3267 -5 806 213 19 0 chr4 95174800 95174981 -89113681 + AluJb SINE Alu 142 312 0 231 336 9 36 chr4 95174987 95175097 -89113565 - MIR SINE MIR -6 256 150 203 302 103 40 chr4 95175136 95175262 -89113400 - L2 LINE L2 -3 3310 3177 21 82 0 0 chr4 95175410 95175459 -89113203 + AT_rich Low_complexity Low_complexity 1 49 0 576 208 174 7 chr4 95176163 95176312 -89112350 + MER5B DNA MER1_type 2 175 -3 23 0 0 0 chr4 95176596 95176619 -89112043 + AT_rich Low_complexity Low_complexity 1 23 0 197 330 66 66 chr4 95177011 95177117 -89111545 + MIR SINE MIR 41 146 -62 203 245 104 85 chr4 95177392 95177498 -89111164 + L2 LINE L2 3202 3309 -4 21 0 0 0 chr4 95178996 95179017 -89109645 + AT_rich Low_complexity Low_complexity 1 21 0 25 95 0 0 chr4 95179210 95179284 -89109378 + AT_rich Low_complexity Low_complexity 1 74 0 374 297 11 0 chr4 95179617 95179708 -89108954 + L2 LINE L2 3149 3240 -32 276 252 187 19 chr4 95179759 95179866 -89108796 + MIR3 SINE MIR 10 134 -74 23 33 0 0 chr4 95180500 95180530 -89108132 + AT_rich Low_complexity Low_complexity 1 30 0 182 382 73 0 chr4 95180823 95180891 -89107771 + L2 LINE L2 3173 3245 -27 237 83 0 0 chr4 95181021 95181057 -89107605 + (TTTTA)n Simple_repeat Simple_repeat 3 38 0 7826 17 0 0 chr4 95181062 95182307 -89106355 - L1PA2 LINE L1 -5 6150 4906 252 59 0 0 chr4 95182723 95182757 -89105905 + (TG)n Simple_repeat Simple_repeat 1 34 0 27 0 0 0 chr4 95183177 95183204 -89105458 + AT_rich Low_complexity Low_complexity 1 27 0 2748 103 71 0 chr4 95183204 95183629 -89105033 - L1PB2 LINE L1 -1 6150 5696 2050 141 7 0 chr4 95183784 95184088 -89104574 + AluSx SINE Alu 1 306 -6 523 312 13 0 chr4 95184153 95184310 -89104352 - MIR SINE MIR 0 262 104 25 31 0 0 chr4 95185491 95185523 -89103139 + AT_rich Low_complexity Low_complexity 1 32 0 256 289 13 26 chr4 95186225 95186301 -89102361 - L2 LINE L2 -11 3261 3187 345 284 164 0 chr4 95186325 95186459 -89102203 + MIR SINE MIR 2 157 -105 2579 92 171 110 chr4 95186468 95187208 -89101454 - LTR12 LTR ERV1 -42 2396 1 1801 123 25 33 chr4 95187213 95187891 -89100771 + Harlequin LTR ERV1 706 4405 -3380 1033 44 0 0 chr4 95187868 95188005 -89100657 + Harlequin LTR ERV1 1584 1720 -5176 * 4315 82 21 0 chr4 95188000 95188619 -89100043 + Harlequin LTR ERV1 7757 8388 -11 235 250 143 27 chr4 95188619 95188630 -89100032 + MIR SINE MIR 138 146 -116 5135 57 84 119 chr4 95188630 95189486 -89099176 + LTR12 LTR ERV1 1 826 0 235 250 143 27 chr4 95189486 95189586 -89099076 + MIR SINE MIR 146 262 0 424 313 35 0 chr4 95190335 95190479 -89098183 - MIR SINE MIR -2 260 112 238 250 83 0 chr4 95190854 95190926 -89097736 - MIR SINE MIR -173 89 12 23 0 0 0 chr4 95191103 95191126 -89097536 + AT_rich Low_complexity Low_complexity 1 23 0 37 0 0 0 chr4 95191607 95191644 -89097018 + AT_rich Low_complexity Low_complexity 1 37 0 1817 136 52 35 chr4 95191700 95192067 -89096595 + THE1C LTR MaLR 1 373 -2 252 256 213 19 chr4 95192166 95192326 -89096336 - MIR SINE MIR 0 262 72 6663 131 82 118 chr4 95192376 95194135 -89094527 + pTR5 LTR ERV1 743 2438 0 827 263 91 13 chr4 95194140 95194372 -89094290 - MIR SINE MIR 0 262 13 684 233 7 0 chr4 95195174 95195324 -89093338 + MIR SINE MIR 112 262 0 418 225 135 45 chr4 95195571 95195749 -89092913 + LTR50 LTR ERVL 9 202 -593 214 178 0 22 chr4 95196186 95196231 -89092431 + CT-rich Low_complexity Low_complexity 1 44 0 9649 159 18 10 chr4 95196660 95197491 -89091171 - L1MA2 LINE L1 0 7723 6901 1972 157 3 3 chr4 95197491 95197785 -89090877 + AluSc SINE Alu 1 294 -15 9649 159 18 10 chr4 95197785 95199926 -89088736 - L1MA2 LINE L1 -822 6901 4725 3230 116 15 44 chr4 95199926 95200452 -89088210 + MER9 LTR ERVK 1 511 0 3697 95 19 18 chr4 95200452 95201019 -89087643 + HERVK9 LTR ERVK 1 568 -5348 * 31861 91 5 5 chr4 95201017 95205508 -89083154 + HERVK9 LTR ERVK 1424 5916 0 3126 127 20 10 chr4 95205508 95206014 -89082648 + MER9 LTR ERVK 1 511 0 5620 158 54 10 chr4 95206014 95207321 -89081341 - L1MA2 LINE L1 -2835 4730 3293 2102 134 0 0 chr4 95207321 95207611 -89081051 - AluSg SINE Alu -20 290 1 5620 158 54 10 chr4 95207611 95208313 -89080349 - L1MA2 LINE L1 -4272 3293 2623 2173 108 24 14 chr4 95208325 95208620 -89080042 - AluSc SINE Alu -11 298 1 1072 188 55 110 chr4 95208693 95208948 -89079714 - MLT1D LTR MaLR -4 501 223 916 241 53 49 chr4 95208974 95209447 -89079215 - HAL1 LINE L1 -1053 1454 980 281 234 13 13 chr4 95209447 95209524 -89079138 + (TA)n Simple_repeat Simple_repeat 2 78 0 2011 116 21 85 chr4 95209546 95209935 -89078727 + THE1B LTR MaLR 1 364 0 314 319 181 0 chr4 95209955 95210137 -89078525 - HAL1 LINE L1 -1706 801 587 2262 97 7 13 chr4 95210461 95210761 -89077901 - AluSq SINE Alu -12 301 4 23 78 0 0 chr4 95210977 95211028 -89077634 + AT_rich Low_complexity Low_complexity 1 51 0 1918 141 0 0 chr4 95211098 95211374 -89077288 + AluSx SINE Alu 28 303 -9 3422 181 44 63 chr4 95211398 95211547 -89077115 + L1M2 LINE L1 1923 2073 -4775 3432 117 36 48 chr4 95211547 95212154 -89076508 - MER4A LTR ERV1 0 600 1 3422 181 44 63 chr4 95212154 95213187 -89075475 + L1M2 LINE L1 2073 3085 -3763 1506 144 35 3 chr4 95213173 95213458 -89075204 + L1MA5 LINE L1 5808 6101 -199 * 456 278 6 28 chr4 95213584 95213760 -89074902 + L1M2 LINE L1 3256 3427 -3421 253 264 14 0 chr4 95214158 95214230 -89074432 + MER94 DNA DNA 1 73 -61 191 146 244 61 chr4 95214895 95214977 -89073685 - MIR SINE MIR -99 163 67 208 352 56 24 chr4 95217808 95217933 -89070729 - MIR3 SINE MIR -45 163 35 430 251 150 0 chr4 95219534 95219677 -89068985 + MER5A DNA MER1_type 4 171 -18 3072 183 4 2 chr4 95219703 95220228 -89068434 + MER1A DNA MER1_type 1 526 -1 2322 171 42 6 chr4 95221971 95222493 -89066169 + L1MB2 LINE L1 4084 4624 -1522 * 3503 225 49 60 chr4 95222492 95223432 -89065230 - MLT1A1-int LTR MaLR -752 983 52 2438 95 0 0 chr4 95223432 95223736 -89064926 - AluY SINE Alu -7 304 1 3503 225 49 60 chr4 95223736 95223786 -89064876 - MLT1A1-int LTR MaLR -1683 52 3 749 231 218 44 chr4 95223788 95224104 -89064558 - MLT1A1 LTR MaLR 0 374 4 4488 196 17 8 chr4 95224171 95225658 -89063004 + L1MB2 LINE L1 4662 6163 -8 1060 278 189 8 chr4 95225661 95226280 -89062382 + L1MEc LINE L1 1015 1745 -4651 336 269 109 45 chr4 95226266 95226467 -89062195 + L1ME1 LINE L1 5936 6149 -17 * 3856 70 6 15 chr4 95226491 95227018 -89061644 - L1PA8 LINE L1 0 6172 5651 2747 59 0 0 chr4 95227018 95227524 -89061138 + L1P3 LINE L1 5104 5609 -563 638 224 13 0 chr4 95227832 95227988 -89060674 - L1MB2 LINE L1 -1 6170 6013 320 268 45 36 chr4 95228162 95228274 -89060388 - MER94 DNA DNA -1 133 21 2551 185 17 17 chr4 95228274 95228738 -89059924 + L1MA3 LINE L1 20 483 -7082 * 5109 144 36 26 chr4 95228736 95229684 -89058978 + L1MA3 LINE L1 1573 2593 -4972 11087 155 23 6 chr4 95229684 95230876 -89057786 + L1MA3 LINE L1 4616 5786 -1938 180 0 0 0 chr4 95230876 95230896 -89057766 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 11087 155 23 6 chr4 95230896 95232245 -89056417 + L1MA3 LINE L1 5786 7222 -502 1504 170 34 81 chr4 95232245 95232568 -89056094 + AluJo SINE Alu 1 308 -4 11087 155 23 6 chr4 95232568 95233080 -89055582 + L1MA3 LINE L1 7222 7724 0 670 348 29 32 chr4 95233550 95233924 -89054738 + MLT1K LTR MaLR 3 375 -213 275 275 70 18 chr4 95234034 95234159 -89054503 - MIR SINE MIR -66 142 36 1019 163 0 6 chr4 95234909 95235075 -89053587 - MLT1A1 LTR MaLR -3 362 198 1379 184 4 0 chr4 95235078 95235306 -89053356 - AluJo SINE Alu -83 229 1 806 175 0 44 chr4 95235309 95235469 -89053193 - MLT1A1 LTR MaLR -212 153 1 703 278 68 12 chr4 95237645 95237897 -89050765 + LTR33 LTR ERVL 256 521 0 202 226 38 38 chr4 95238451 95238504 -89050158 + L2 LINE L2 1370 1422 -1892 1909 88 92 3 chr4 95238644 95238928 -89049734 + L1PB1 LINE L1 5843 6151 0 216 97 0 0 chr4 95238986 95239017 -89049645 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 186 382 33 33 chr4 95239173 95239325 -89049337 - L2 LINE L2 -215 3057 2906 2076 118 48 40 chr4 95240144 95240516 -89048146 - THE1C LTR MaLR 0 375 1 1198 40 0 13 chr4 95241619 95241771 -89046891 - L1PA8 LINE L1 -6 6166 6017 21 0 0 0 chr4 95242369 95242390 -89046272 + AT_rich Low_complexity Low_complexity 1 21 0 456 314 47 60 chr4 95242692 95243010 -89045652 + L2 LINE L2 2874 3187 -126 4614 153 8 16 chr4 95243012 95243751 -89044911 - MER52A LTR ERV1 0 1755 1023 377 308 25 0 chr4 95243760 95243880 -89044782 + L2 LINE L2 3188 3310 -3 26 0 0 0 chr4 95244216 95244242 -89044420 + AT_rich Low_complexity Low_complexity 1 26 0 523 27 27 0 chr4 95244598 95244671 -89043991 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 23 54 0 0 chr4 95245144 95245181 -89043481 + AT_rich Low_complexity Low_complexity 1 37 0 193 289 72 31 chr4 95246231 95246328 -89042334 - L2 LINE L2 -244 3028 2928 197 421 51 13 chr4 95246629 95246864 -89041798 - L2 LINE L2 -703 2611 2368 213 189 0 75 chr4 95247266 95247319 -89041343 + L2 LINE L2 3264 3312 -1 194 299 213 16 chr4 95247519 95247646 -89041016 + MIR SINE MIR 20 171 -91 2215 118 24 37 chr4 95247832 95248212 -89040450 + THE1C LTR MaLR 1 375 0 3048 263 68 71 chr4 95248565 95248664 -89039998 + L2 LINE L2 1606 1704 -1609 2915 52 0 0 chr4 95248664 95249026 -89039636 + L1PA8 LINE L1 5803 6164 -8 3048 263 68 71 chr4 95249026 95250655 -89038007 + L2 LINE L2 1704 3313 0 198 348 125 38 chr4 95250848 95251032 -89037630 + MIR SINE MIR 20 219 -43 7081 94 1 6 chr4 95253755 95255521 -89033141 + L1PA8A LINE L1 4363 6125 -6 25 65 0 0 chr4 95255713 95255759 -89032903 + AT_rich Low_complexity Low_complexity 1 46 0 11581 31 3 0 chr4 95255759 95257907 -89030755 - L1PA3 LINE L1 -1 6154 4003 16494 38 1 1 chr4 95257907 95259956 -89028706 + L1PA3 LINE L1 1954 4003 -2143 269 368 49 0 chr4 95262635 95262779 -89025883 - MIR3 SINE MIR -11 197 47 196 297 99 22 chr4 95263067 95263158 -89025504 + L2 LINE L2 3153 3250 -22 22 0 0 0 chr4 95263369 95263391 -89025271 + AT_rich Low_complexity Low_complexity 1 22 0 2042 118 7 13 chr4 95263673 95263979 -89024683 - AluSc SINE Alu -5 304 1 5946 123 9 0 chr4 95264093 95265362 -89023300 + L1PA15 LINE L1 4877 6159 -6 587 215 8 8 chr4 95265735 95265856 -89022806 - FLAM_A SINE Alu -9 124 4 256 175 97 58 chr4 95266311 95266381 -89022281 + L1ME4a LINE L1 6015 6092 -29 2354 125 40 3 chr4 95266381 95266757 -89021905 + MLT1B LTR MaLR 1 390 0 256 175 97 58 chr4 95266757 95266789 -89021873 + L1ME4a LINE L1 6092 6121 0 303 373 44 19 chr4 95266969 95267127 -89021535 + L3 LINE CR1 1404 1565 -12 26 50 0 0 chr4 95267556 95267596 -89021066 + AT_rich Low_complexity Low_complexity 1 40 0 221 391 0 11 chr4 95268801 95268888 -89019774 + MER91A DNA MER1_type 1 86 -110 488 255 19 0 chr4 95270582 95270688 -89017974 + MER81 DNA DNA 6 113 -1 403 60 179 0 chr4 95272813 95272880 -89015782 + MADE1 DNA Mariner 2 80 0 278 293 164 14 chr4 95273515 95273655 -89015007 - MIR SINE MIR -28 234 74 5954 99 19 0 chr4 95273692 95275609 -89013053 + L1PA13 LINE L1 4201 6144 -19 237 313 38 0 chr4 95275620 95275700 -89012962 - MIR SINE MIR -133 129 47 210 307 13 13 chr4 95276029 95276104 -89012558 + MER5B DNA MER1_type 2 76 -102 828 225 192 4 chr4 95276198 95276226 -89012436 + MER5C DNA MER1_type 1 22 -302 225 0 0 0 chr4 95276226 95276251 -89012411 + (TTA)n Simple_repeat Simple_repeat 1 25 0 828 225 192 4 chr4 95276251 95276493 -89012169 + MER5C DNA MER1_type 22 322 -2 214 263 158 0 chr4 95277536 95277631 -89011031 - MIR SINE MIR -65 197 88 25 31 0 0 chr4 95277865 95277897 -89010765 + AT_rich Low_complexity Low_complexity 1 32 0 257 320 50 21 chr4 95278344 95278462 -89010200 + MIR SINE MIR 45 170 -59 467 325 19 43 chr4 95278494 95278703 -89009959 + MIR SINE MIR 59 262 0 2003 196 42 22 chr4 95278988 95279441 -89009221 + MLT1C LTR MaLR 6 467 0 180 224 0 177 chr4 95280541 95280688 -89007974 + L3b LINE CR1 1202 1322 -261 1689 137 18 62 chr4 95280794 95280835 -89007827 + MER65A LTR ERV1 1 42 -403 207 0 0 0 chr4 95280835 95280858 -89007804 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1689 137 18 62 chr4 95280858 95281153 -89007509 + MER65A LTR ERV1 42 322 -123 17412 171 26 5 chr4 95281153 95288304 -89000358 - L1PA14 LINE L1 -21 7578 2 935 125 0 25 chr4 95288304 95288464 -89000198 + MER65A LTR ERV1 290 445 0 307 264 129 26 chr4 95288978 95289133 -88999529 + MIR SINE MIR 22 192 -70 234 0 0 0 chr4 95289334 95289360 -88999302 + (TG)n Simple_repeat Simple_repeat 2 27 0 269 303 86 43 chr4 95289444 95289678 -88998984 - MLT1L LTR MaLR -198 417 174 767 203 26 65 chr4 95289816 95290048 -88998614 + MER90 LTR ERV1 5 227 -348 1349 200 195 15 chr4 95290073 95290539 -88998123 + MLT1F1 LTR MaLR 13 562 -5 1375 230 12 12 chr4 95290545 95290875 -88997787 + MER90 LTR ERV1 275 604 -10 831 293 45 8 chr4 95290971 95291213 -88997449 - MIR SINE MIR 0 262 12 224 338 14 0 chr4 95293020 95293094 -88995568 + MIR SINE MIR 50 124 -138 285 139 23 12 chr4 95293255 95293341 -88995321 + (TA)n Simple_repeat Simple_repeat 2 88 0 2162 128 0 0 chr4 95293345 95293634 -88995028 - AluSx SINE Alu -23 289 1 262 221 55 116 chr4 95293701 95293882 -88994780 + LTR33 LTR ERVL 50 219 -302 639 282 46 37 chr4 95294253 95294494 -88994168 + MIR SINE MIR 20 262 0 202 271 65 4 chr4 95294715 95294842 -88993820 - MER5B DNA MER1_type -6 183 4 389 222 56 130 chr4 95296826 95297096 -88991566 + MLT1C LTR MaLR 6 255 -135 1457 192 47 26 chr4 95297096 95297302 -88991360 - L1M2 LINE L1 -681 7050 6850 2169 110 0 13 chr4 95297302 95297602 -88991060 - AluSx SINE Alu -14 298 3 1457 192 47 26 chr4 95297602 95297898 -88990764 - L1M2 LINE L1 -881 6850 6544 4500 174 92 7 chr4 95297904 95298949 -88989713 - L1M2 LINE L1 -1215 6350 5217 252 248 103 0 chr4 95298950 95299067 -88989595 - L1M2 LINE L1 -4385 3180 3052 902 175 183 4 chr4 95299067 95299307 -88989355 - MER33 DNA MER1_type -34 290 8 23 54 0 0 chr4 95299347 95299384 -88989278 + AT_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chr4 95299451 95299484 -88989178 + AT_rich Low_complexity Low_complexity 1 33 0 707 169 57 0 chr4 95299568 95299692 -88988970 + FLAM_C SINE Alu 1 131 -2 339 44 0 0 chr4 95300020 95300065 -88988597 + (TG)n Simple_repeat Simple_repeat 2 46 0 237 221 15 44 chr4 95301922 95301990 -88986672 + L3 LINE CR1 1497 1562 -15 2417 123 3 14 chr4 95302029 95302395 -88986267 - THE1B LTR MaLR 0 364 3 919 143 38 33 chr4 95305162 95305372 -88983290 + L1M4b LINE L1 1350 1560 -5299 1335 176 126 56 chr4 95305372 95305713 -88982949 - MLT1A1 LTR MaLR 0 365 1 2297 242 5 7 chr4 95305717 95306297 -88982365 - MLT1A1-int LTR MaLR -4 1731 1064 226 255 0 0 chr4 95306357 95306408 -88982254 + L1MB8 LINE L1 5500 5550 -571 2127 186 34 40 chr4 95306444 95306975 -88981687 + L1MB8 LINE L1 5647 6174 -4 208 161 32 0 chr4 95307946 95308008 -88980654 + (TA)n Simple_repeat Simple_repeat 2 65 0 1180 273 126 22 chr4 95308036 95308480 -88980182 + L2 LINE L2 2319 2808 -506 1002 110 104 0 chr4 95308572 95308735 -88979927 - L1PA13 LINE L1 0 6163 5984 4158 101 16 5 chr4 95308741 95309382 -88979280 + L1PA13 LINE L1 5341 5988 -180 283 336 66 7 chr4 95309390 95309527 -88979135 + L2 LINE L2 3167 3311 -2 2581 11 0 0 chr4 95309799 95310080 -88978582 + AluYb8 SINE Alu 32 312 -6 716 137 0 17 chr4 95310464 95310581 -88978081 - AluJo SINE Alu -177 135 21 3348 206 67 16 chr4 95310953 95311775 -88976887 + ERVL-C1 LTR ERVL 4828 5691 -73 9476 196 31 15 chr4 95311776 95312585 -88976077 - L1PA15 LINE L1 -6 7597 6803 3595 63 13 0 chr4 95312585 95313032 -88975630 + MLT2A2 LTR ERVL 1 453 0 9476 196 31 15 chr4 95313032 95315207 -88973455 - L1PA15 LINE L1 -800 6803 4566 6054 226 19 12 chr4 95315213 95317981 -88970681 - L1PA15 LINE L1 -3121 4463 1674 1079 288 31 36 chr4 95317971 95318360 -88970302 - L1PA15 LINE L1 -7185 396 10 * 1414 189 9 31 chr4 95318437 95318503 -88970159 + MLT2C1 LTR ERVL 1 67 -330 1695 201 78 16 chr4 95318503 95318876 -88969786 + MSTD LTR MaLR 1 396 0 1414 189 9 31 chr4 95318876 95319132 -88969530 + MLT2C1 LTR ERVL 67 316 -81 3363 123 18 6 chr4 95319272 95319777 -88968885 - MER9 LTR ERVK 0 511 1 2220 60 0 0 chr4 95319777 95320059 -88968603 - HERVK9 LTR ERVK 0 5916 5635 13758 83 7 4 chr4 95320155 95322074 -88966588 - HERVK9 LTR ERVK -282 5634 3711 1006 52 0 8 chr4 95322074 95322208 -88966454 - HERVK9 LTR ERVK -3130 2786 2654 * 16257 88 31 27 chr4 95322207 95323855 -88964807 - HERVK9 LTR ERVK -3447 2469 752 187 241 0 93 chr4 95323855 95323909 -88964753 - MER5B DNA MER1_type -72 106 58 16257 88 31 27 chr4 95323909 95324665 -88963997 - HERVK9 LTR ERVK -5164 752 1 2141 105 3 32 chr4 95324665 95325009 -88963653 - MER9 LTR ERVK 0 511 178 41125 51 2 0 chr4 95325013 95331160 -88957502 + L1PA4 LINE L1 1 6155 0 1346 80 5 0 chr4 95331163 95331351 -88957311 - MER9 LTR ERVK -322 189 1 393 333 116 9 chr4 95332629 95332854 -88955808 - MIR SINE MIR -11 251 3 230 374 52 7 chr4 95333056 95333211 -88955451 + MIR3 SINE MIR 2 163 -45 1754 220 57 26 chr4 95333324 95333672 -88954990 + L1ME1 LINE L1 5603 5975 -191 1863 168 61 3 chr4 95333672 95334017 -88954645 - MLT1A1 LTR MaLR 0 365 1 1754 220 57 26 chr4 95334017 95334209 -88954453 + L1ME1 LINE L1 5975 6160 -6 1111 262 78 14 chr4 95334236 95334671 -88953991 + L1ME3A LINE L1 5433 5895 -275 280 340 124 16 chr4 95335126 95335311 -88953351 - MIR SINE MIR -37 225 21 342 254 156 18 chr4 95335485 95335656 -88953006 + MIR SINE MIR 23 219 -43 5461 241 20 22 chr4 95336428 95338966 -88949696 - L1PBa LINE L1 -5224 1639 3 585 252 134 31 chr4 95338983 95339273 -88949389 - L1M4c LINE L1 -4788 1596 1277 439 219 8 8 chr4 95339274 95339397 -88949265 + CT-rich Low_complexity Low_complexity 1 123 0 267 247 55 14 chr4 95339411 95339427 -88949235 - FAM SINE Alu -156 155 141 1019 93 6 22 chr4 95339427 95339610 -88949052 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 267 247 55 14 chr4 95339610 95339666 -88948996 - FAM SINE Alu -170 141 102 501 336 40 62 chr4 95339737 95340187 -88948475 - L1M4c LINE L1 -5698 615 176 720 205 0 8 chr4 95340533 95340660 -88948002 - FLAM_C SINE Alu -17 126 1 1216 203 93 38 chr4 95340845 95341285 -88947377 - MLT1E1 LTR MaLR -133 521 1 698 203 0 0 chr4 95341669 95341807 -88946855 - MLT1B LTR MaLR 0 390 253 1471 210 13 54 chr4 95341807 95342197 -88946465 - MLT1A2 LTR MaLR 0 374 1 442 289 45 69 chr4 95342917 95343163 -88945499 + MLT1J LTR MaLR 272 511 0 267 442 14 14 chr4 95344406 95344553 -88944109 - MIR3 SINE MIR -47 161 15 252 227 18 18 chr4 95346488 95346598 -88942064 + CT-rich Low_complexity Low_complexity 4 113 0 5600 106 13 5 chr4 95347072 95348099 -88940563 + L1PB2 LINE L1 5074 6108 -43 3561 85 4 10 chr4 95348099 95348604 -88940058 + L1PA13 LINE L1 5660 6162 -1 401 51 17 0 chr4 95348604 95348657 -88940005 + L1PB2 LINE L1 6090 6149 -2 38 0 0 0 chr4 95348657 95348695 -88939967 + AT_rich Low_complexity Low_complexity 1 38 0 402 294 29 44 chr4 95349014 95349150 -88939512 - L2 LINE L2 -5 3308 3175 314 291 45 89 chr4 95349147 95349326 -88939336 - L2 LINE L2 -946 2368 2198 * 235 232 18 0 chr4 95349333 95349389 -88939273 + (TTCA)n Simple_repeat Simple_repeat 3 59 0 337 340 14 14 chr4 95349691 95349838 -88938824 + L2 LINE L2 1780 1926 -1388 257 323 82 36 chr4 95349839 95350034 -88938628 - MLT1K LTR MaLR -64 524 321 1350 302 58 59 chr4 95350367 95351145 -88937517 + L2 LINE L2 1936 2712 -602 457 192 0 0 chr4 95351156 95351234 -88937428 + AluS SINE Alu 1 78 -235 1046 121 30 18 chr4 95351234 95351400 -88937262 + AluJo/FRAM SINE Alu 145 312 0 243 0 0 0 chr4 95351403 95351430 -88937232 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 510 46 0 0 chr4 95351429 95351494 -88937168 + (GA)n Simple_repeat Simple_repeat 2 66 0 366 308 141 33 chr4 95351503 95351793 -88936869 + L2 LINE L2 2730 3060 -212 872 279 80 21 chr4 95351871 95352217 -88936445 - LTR16A LTR ERVL -28 426 59 344 250 86 9 chr4 95352335 95352451 -88936211 + L2 LINE L2 3184 3308 -5 233 329 75 31 chr4 95352564 95352725 -88935937 - L2 LINE L2 -611 2703 2536 2342 79 0 20 chr4 95352974 95353279 -88935383 - AluY SINE Alu -12 299 1 2041 122 0 10 chr4 95353976 95354270 -88934392 + AluSg SINE Alu 1 291 -19 327 271 188 36 chr4 95354336 95354613 -88934049 - L2 LINE L2 -111 3202 2884 301 255 37 99 chr4 95355952 95356113 -88932549 + L2 LINE L2 3121 3271 -1 225 273 39 13 chr4 95356318 95356395 -88932267 - MIR SINE MIR -12 250 172 2141 53 0 8 chr4 95356863 95357127 -88931535 - AluY SINE Alu -9 302 41 477 269 27 0 chr4 95357573 95357588 -88931074 - L1MA10 LINE L1 -2 6332 6318 2451 308 65 3 chr4 95357588 95358381 -88930281 - L1ME2 LINE L1 -11 6153 5288 1886 85 8 23 chr4 95358381 95358641 -88930021 + AluSc SINE Alu 38 293 -16 2451 308 65 3 chr4 95358641 95358788 -88929874 - L1ME2 LINE L1 -876 5288 5152 4240 221 100 27 chr4 95358799 95360275 -88928387 - L1ME2 LINE L1 -1962 4184 2602 1594 119 0 36 chr4 95360292 95360545 -88928117 - MER1B DNA MER1_type -35 304 61 900 224 28 8 chr4 95360576 95360831 -88927831 - L1ME2 LINE L1 -3539 2607 2348 457 221 144 71 chr4 95360838 95361373 -88927289 - L1M4 LINE L1 -2685 3461 2888 1616 160 57 21 chr4 95361399 95361731 -88926931 - THE1C LTR MaLR -31 344 1 410 135 79 22 chr4 95361731 95361820 -88926842 + MER6 DNA MER2_type 51 865 0 549 277 64 76 chr4 95363852 95364166 -88924496 + L2 LINE L2 3004 3313 0 350 311 0 29 chr4 95364420 95364523 -88924139 + L2 LINE L2 3189 3288 -25 3300 178 11 11 chr4 95364908 95365537 -88923125 + L1PA16 LINE L1 5523 6151 -15 410 341 62 29 chr4 95365833 95366041 -88922621 - L2 LINE L2 -409 2905 2691 503 342 35 15 chr4 95366165 95366504 -88922158 + L1MEc LINE L1 77 422 -5974 5652 77 13 1 chr4 95366803 95367558 -88921104 - L1PA11 LINE L1 -2 6172 5409 4938 224 31 54 chr4 95367558 95369478 -88919184 - L1PA12 LINE L1 -3979 3605 885 3200 165 23 3 chr4 95369660 95370229 -88918433 + LTR22 LTR ERVK 1 580 0 540 265 0 0 chr4 95371157 95371274 -88917388 - MER5A DNA MER1_type -72 117 1 2310 69 45 0 chr4 95375564 95375853 -88912809 + AluY SINE Alu 1 302 -9 572 248 7 14 chr4 95376009 95376154 -88912508 - MIR SINE MIR -7 255 112 441 286 177 27 chr4 95376246 95376366 -88912296 - MLT1J2 LTR MaLR -121 329 228 1882 201 46 44 chr4 95376366 95376869 -88911793 - MLT1D LTR MaLR -1 504 1 441 286 177 27 chr4 95376869 95376968 -88911694 - MLT1J2 LTR MaLR -222 228 77 429 263 120 54 chr4 95377151 95377851 -88910811 - L1M4 LINE L1 -2504 3642 2897 287 297 11 19 chr4 95378836 95378930 -88909732 - MIR SINE MIR -57 151 64 1519 214 50 31 chr4 95379800 95380258 -88908404 + MLT1C LTR MaLR 1 467 0 25 0 0 0 chr4 95380261 95380286 -88908376 + AT_rich Low_complexity Low_complexity 1 25 0 24 53 0 0 chr4 95380627 95380665 -88907997 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr4 95381767 95381788 -88906874 + AT_rich Low_complexity Low_complexity 1 21 0 420 262 157 38 chr4 95382879 95383019 -88905643 + L1ME4a LINE L1 5671 5793 -328 1743 175 0 29 chr4 95383019 95383327 -88905335 - AluJb SINE Alu -13 299 1 420 262 157 38 chr4 95383327 95383577 -88905085 + L1ME4a LINE L1 5793 6106 -15 275 367 87 0 chr4 95384017 95384167 -88904495 - MIR3 SINE MIR -43 165 3 6770 120 52 40 chr4 95384191 95385408 -88903254 + Tigger3b DNA MER2_type 1 1231 0 616 160 173 7 chr4 95385912 95386062 -88902600 - MER3 DNA MER1_type 0 209 35 792 270 42 49 chr4 95386273 95386536 -88902126 + MIR SINE MIR 2 262 0 2343 96 0 6 chr4 95387272 95387584 -88901078 + AluSg SINE Alu 1 310 0 1304 144 33 52 chr4 95388296 95388601 -88900061 - MER33 DNA MER1_type -7 317 19 242 224 0 0 chr4 95390664 95390713 -88897949 + (CATA)n Simple_repeat Simple_repeat 3 51 0 346 186 0 43 chr4 95391132 95391202 -88897460 - MER116 DNA Mariner 0 80 14 850 257 104 42 chr4 95392361 95392793 -88895869 + L1ME4a LINE L1 5491 5949 -172 28 61 0 0 chr4 95392829 95392878 -88895784 + AT_rich Low_complexity Low_complexity 1 49 0 316 359 18 18 chr4 95393352 95393519 -88895143 + L1M4 LINE L1 2972 3138 -3008 2149 89 0 51 chr4 95393783 95394096 -88894566 - AluSg SINE Alu -13 297 1 195 69 0 0 chr4 95394260 95394289 -88894373 + (CAT)n Simple_repeat Simple_repeat 3 31 0 741 124 0 0 chr4 95394739 95394852 -88893810 + AluSg/x SINE Alu 186 298 -14 234 0 0 0 chr4 95394867 95394893 -88893769 + (TG)n Simple_repeat Simple_repeat 1 26 0 2459 58 0 7 chr4 95395181 95395490 -88893172 - AluSc SINE Alu -2 307 1 2155 95 3 0 chr4 95395490 95395786 -88892876 - AluSq SINE Alu -16 297 1 228 333 121 23 chr4 95398199 95398331 -88890331 - L2 LINE L2 0 3313 3169 253 318 30 90 chr4 95398547 95398673 -88889989 - L2 LINE L2 -821 2493 2382 2438 68 0 0 chr4 95398673 95398984 -88889678 + AluY SINE Alu 1 311 0 253 318 30 90 chr4 95398984 95399058 -88889604 - L2 LINE L2 -932 2382 2305 574 319 156 3 chr4 95399133 95399421 -88889241 - MER102b DNA MER1_type 0 341 10 4582 195 85 33 chr4 95400809 95402256 -88886406 + L1MC3 LINE L1 4109 7782 -3 820 323 18 35 chr4 95402755 95403222 -88885440 - L1MEc LINE L1 -4600 1796 1338 1788 202 73 43 chr4 95403222 95403712 -88884950 + MLT1D LTR MaLR 1 505 0 820 323 18 35 chr4 95403712 95403789 -88884873 - L1MEc LINE L1 -5058 1338 1261 2774 7 0 0 chr4 95409079 95409384 -88879278 + AluYa5 SINE Alu 1 305 -6 245 215 46 0 chr4 95409499 95409564 -88879098 - MER69 DNA AcHobo -9 2517 2450 * 536 165 94 31 chr4 95409561 95409688 -88878974 - MER69 DNA AcHobo -2379 147 13 1595 122 5 0 chr4 95409989 95410211 -88878451 + AluSp SINE Alu 1 223 -90 470 234 151 103 chr4 95411812 95412269 -88876393 + L2 LINE L2 2713 3207 -106 1932 158 7 0 chr4 95412340 95412650 -88876012 + AluJb SINE Alu 1 312 0 322 301 11 0 chr4 95412670 95412763 -88875899 + L2 LINE L2 3220 3313 0 867 223 14 56 chr4 95412821 95412882 -88875780 + MIR SINE MIR 5 67 -195 2268 114 16 0 chr4 95412882 95413188 -88875474 + AluSx SINE Alu 1 311 -1 867 223 14 56 chr4 95413188 95413341 -88875321 + MIR SINE MIR 67 210 -52 182 37 37 0 chr4 95414293 95414320 -88874342 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 262 349 133 8 chr4 95414887 95415136 -88873526 + L3 LINE CR1 1046 1325 -252 654 309 86 8 chr4 95417759 95418002 -88870660 - MIR SINE MIR 0 262 1 363 192 0 0 chr4 95421271 95421349 -88867313 + (TA)n Simple_repeat Simple_repeat 2 79 0 326 267 47 0 chr4 95421349 95421435 -88867227 - L1MC4 LINE L1 -1339 6703 6614 326 267 47 0 chr4 95421461 95421547 -88867115 - L1MC4 LINE L1 -1339 6703 6614 269 206 22 43 chr4 95421585 95421677 -88866985 - L1MC4 LINE L1 -1339 6703 6614 267 140 0 0 chr4 95421683 95421733 -88866929 + (TA)n Simple_repeat Simple_repeat 2 51 0 383 228 35 26 chr4 95422644 95422758 -88865904 - MER5A DNA MER1_type 0 189 75 357 308 16 81 chr4 95422646 95422763 -88865899 + MER5A DNA MER1_type 17 119 -70 * 2310 71 21 0 chr4 95422763 95423046 -88865616 - AluSx SINE Alu -21 291 3 357 308 16 81 chr4 95423046 95423113 -88865549 + MER5A DNA MER1_type 119 189 0 190 300 100 14 chr4 95423114 95423184 -88865478 - MIR3 SINE MIR -49 159 84 287 25 25 0 chr4 95423456 95423496 -88865166 + (CA)n Simple_repeat Simple_repeat 2 42 0 204 97 0 0 chr4 95424484 95424515 -88864147 + (TG)n Simple_repeat Simple_repeat 2 32 0 6415 144 41 30 chr4 95424515 95425731 -88862931 - Tigger3b DNA MER2_type -1 1230 1 254 320 86 23 chr4 95425731 95425859 -88862803 + L2 LINE L2 3173 3308 -5 32 26 0 0 chr4 95426415 95426454 -88862208 + AT_rich Low_complexity Low_complexity 1 39 0 818 257 60 14 chr4 95426607 95426976 -88861686 - MLT1G LTR MaLR -196 359 13 324 80 20 0 chr4 95429001 95429051 -88859611 + MADE1 DNA Mariner 1 51 -29 24 53 0 0 chr4 95430990 95431028 -88857634 + AT_rich Low_complexity Low_complexity 1 38 0 2449 81 7 0 chr4 95431350 95431660 -88857002 - AluSp SINE Alu -1 312 1 320 151 0 0 chr4 95431674 95431727 -88856935 + MIR SINE MIR 101 153 -109 538 278 78 48 chr4 95432046 95432276 -88856386 + MIR SINE MIR 15 251 -11 * 590 230 30 7 chr4 95432239 95432374 -88856288 - MIR SINE MIR 0 262 125 24 32 0 0 chr4 95432942 95432973 -88855689 + AT_rich Low_complexity Low_complexity 1 31 0 234 148 0 56 chr4 95434038 95434092 -88854570 - Charlie4 DNA MER1_type -1910 51 1 457 292 60 56 chr4 95434500 95434716 -88853946 + L2 LINE L2 3097 3313 0 26 0 0 0 chr4 95435369 95435395 -88853267 + AT_rich Low_complexity Low_complexity 1 26 0 655 355 75 45 chr4 95435509 95436504 -88852158 - L2 LINE L2 -4 3268 2243 602 214 75 27 chr4 95437127 95437314 -88851348 - L1MC4 LINE L1 -8 8034 7839 2849 271 103 21 chr4 95437315 95438496 -88850166 - L1MC4a LINE L1 -1131 6677 5385 378 74 0 0 chr4 95438563 95438617 -88850045 + (TG)n Simple_repeat Simple_repeat 1 54 0 215 309 36 0 chr4 95438761 95438816 -88849846 - MIR SINE MIR -132 76 20 256 259 0 0 chr4 95438899 95438953 -88849709 + L2 LINE L2 3210 3263 -9 328 356 0 9 chr4 95440158 95440273 -88848389 + MIR SINE MIR 10 123 -139 931 188 39 14 chr4 95440473 95440680 -88847982 + L1MC1 LINE L1 6122 6333 0 264 195 98 49 chr4 95440783 95440865 -88847797 - MLT1I LTR MaLR 0 409 324 2306 93 0 0 chr4 95440866 95441156 -88847506 + AluSg SINE Alu 1 290 -20 344 286 57 21 chr4 95441223 95441363 -88847299 - MLT1J2 LTR MaLR -240 210 66 694 325 121 9 chr4 95442752 95443084 -88845578 - L3 LINE CR1 -3 1574 1206 26 0 0 0 chr4 95444461 95444487 -88844175 + AT_rich Low_complexity Low_complexity 1 26 0 428 275 154 0 chr4 95445281 95445430 -88843232 + MIR SINE MIR 20 191 -71 285 220 127 93 chr4 95445845 95445963 -88842699 - L2 LINE L2 0 3313 3192 337 324 23 0 chr4 95446852 95446987 -88841675 + MIR SINE MIR 46 185 -23 523 261 113 83 chr4 95447154 95447552 -88841110 - MLT1J LTR MaLR -2 509 100 1228 201 9 0 chr4 95447862 95448081 -88840581 - MER58A DNA MER1_type -3 221 1 1939 146 0 19 chr4 95448813 95449121 -88839541 + AluJb SINE Alu 1 302 -10 290 282 122 8 chr4 95449172 95449303 -88839359 + MIR SINE MIR 111 256 -6 1194 201 53 47 chr4 95450673 95451012 -88837650 - MER2 DNA MER2_type 0 344 4 949 206 22 0 chr4 95451214 95451394 -88837268 - MER5A DNA MER1_type -5 184 1 184 313 0 31 chr4 95451915 95451979 -88836683 - MIR3 SINE MIR -6 202 141 320 303 49 49 chr4 95452104 95452266 -88836396 - L3b LINE CR1 -240 1343 1182 546 300 67 42 chr4 95457718 95457835 -88830827 - MIR SINE MIR -6 256 143 1274 209 35 13 chr4 95457835 95458151 -88830511 - MER33 DNA MER1_type 0 324 2 546 300 67 42 chr4 95458151 95458273 -88830389 - MIR SINE MIR -119 143 11 2212 102 0 0 chr4 95458388 95458681 -88829981 - AluY SINE Alu -17 294 2 3059 185 31 5 chr4 95458740 95459351 -88829311 - L1MB8 LINE L1 -105 6073 5447 4086 221 61 24 chr4 95459375 95459387 -88829275 - L1MB8 LINE L1 -807 5339 5329 1811 154 3 29 chr4 95459387 95459693 -88828969 + AluJo SINE Alu 1 298 -14 4086 221 61 24 chr4 95459693 95460901 -88827761 - L1MB8 LINE L1 -817 5329 4089 1142 118 24 0 chr4 95461034 95461204 -88827458 + MER2 DNA MER2_type 1 174 -171 271 233 14 55 chr4 95461287 95461360 -88827302 + MER2 DNA MER2_type 267 336 -9 438 244 172 22 chr4 95461594 95461774 -88826888 + MIR SINE MIR 46 252 -10 369 225 251 42 chr4 95461993 95462184 -88826478 + MIR SINE MIR 32 262 0 197 208 79 89 chr4 95462649 95462750 -88825912 + L2 LINE L2 1863 1962 -1352 390 248 47 60 chr4 95462763 95462912 -88825750 - LTR33 LTR ERVL -7 514 368 542 303 145 4 chr4 95462972 95463200 -88825462 - LTR33 LTR ERVL -258 263 4 1165 128 46 5 chr4 95464188 95464384 -88824278 + AluSg/x SINE Alu 99 302 -10 711 256 40 40 chr4 95464533 95464760 -88823902 - MIR SINE MIR -5 257 31 311 236 45 96 chr4 95465522 95465679 -88822983 - MIR SINE MIR -77 185 37 602 220 73 28 chr4 95465729 95465906 -88822756 - MER5A DNA MER1_type 0 189 5 600 306 48 11 chr4 95466252 95466523 -88822139 + L1ME4a LINE L1 5567 5847 -274 2333 135 26 0 chr4 95466540 95466888 -88821774 + LTR18A LTR ERVL 1 357 0 25 31 0 0 chr4 95467037 95467069 -88821593 + AT_rich Low_complexity Low_complexity 1 32 0 1200 248 79 46 chr4 95467508 95468003 -88820659 + MLT1G1 LTR MaLR 12 555 0 710 102 0 0 chr4 95469015 95469113 -88819549 + MLT1D LTR MaLR 406 503 -2 21 0 0 0 chr4 95473711 95473732 -88814930 + AT_rich Low_complexity Low_complexity 1 21 0 372 245 104 43 chr4 95475884 95476047 -88812615 - MIR SINE MIR -18 244 72 450 0 0 0 chr4 95476447 95476497 -88812165 + (CA)n Simple_repeat Simple_repeat 2 51 0 186 224 383 19 chr4 95476820 95476927 -88811735 + MIR SINE MIR 19 164 -98 328 152 76 0 chr4 95477722 95477788 -88810874 + FAM SINE Alu 102 172 -3 306 267 158 50 chr4 95477798 95477918 -88810744 + MIR3 SINE MIR 43 175 -33 204 40 0 0 chr4 95478112 95478137 -88810525 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr4 95478724 95478745 -88809917 + AT_rich Low_complexity Low_complexity 1 21 0 340 284 84 45 chr4 95479246 95479401 -88809261 + MIR3 SINE MIR 5 165 -43 233 313 80 28 chr4 95480456 95480632 -88808030 - MIR SINE MIR -58 204 20 210 171 0 0 chr4 95480725 95480766 -88807896 + T-rich Low_complexity Low_complexity 4 44 0 306 0 0 0 chr4 95481256 95481290 -88807372 + (TG)n Simple_repeat Simple_repeat 2 35 0 338 260 106 88 chr4 95482586 95482859 -88805803 - L1M2 LINE L1 -5914 935 658 285 128 0 0 chr4 95486327 95486374 -88802288 + (TCC)n Simple_repeat Simple_repeat 3 49 0 260 284 0 14 chr4 95488850 95488924 -88799738 + GA-rich Low_complexity Low_complexity 3 75 0 2080 137 3 6 chr4 95488968 95489281 -88799381 - AluSx SINE Alu 0 312 1 719 265 122 38 chr4 95489314 95489552 -88799110 - MIR SINE MIR -4 258 1 332 330 60 5 chr4 95491284 95491469 -88797193 - MIR SINE MIR -20 242 48 309 281 30 44 chr4 95492829 95492964 -88795698 + L1ME3A LINE L1 5681 5813 -1995 2196 74 3 71 chr4 95493062 95493387 -88795275 + AluY SINE Alu 1 303 -8 28 0 0 0 chr4 95493587 95493615 -88795047 + AT_rich Low_complexity Low_complexity 1 28 0 491 290 58 39 chr4 95493724 95493879 -88794783 - MIR3 SINE MIR -49 159 2 1289 213 39 36 chr4 95493994 95494045 -88794617 + L1ME3A LINE L1 5817 5866 -304 2543 47 0 0 chr4 95494045 95494344 -88794318 - AluY SINE Alu -12 299 1 1289 213 39 36 chr4 95494344 95494626 -88794036 + L1ME3A LINE L1 5866 6151 -19 448 274 183 19 chr4 95494827 95495035 -88793627 + MIR SINE MIR 18 259 -3 228 338 42 28 chr4 95495730 95495872 -88792790 + L2 LINE L2 3168 3311 -2 930 302 125 36 chr4 95495881 95496487 -88792175 + L2 LINE L2 2163 2822 -492 310 366 88 34 chr4 95496573 95496868 -88791794 + L2 LINE L2 2957 3267 -46 291 274 24 12 chr4 95496914 95496998 -88791664 + L2 LINE L2 3219 3303 -10 240 231 141 0 chr4 95499495 95499573 -88789089 + MIR SINE MIR 133 221 -41 255 278 0 0 chr4 95499866 95499920 -88788742 - MIR3 SINE MIR -46 162 109 265 93 37 0 chr4 95500549 95500603 -88788059 + (CAT)n Simple_repeat Simple_repeat 1 56 0 300 341 109 44 chr4 95500611 95500652 -88788010 - MIR SINE MIR -13 249 212 204 40 0 0 chr4 95500652 95500677 -88787985 + (CA)n Simple_repeat Simple_repeat 2 26 0 * 216 0 0 0 chr4 95500676 95500700 -88787962 + (TA)n Simple_repeat Simple_repeat 2 25 0 2257 99 0 10 chr4 95500677 95500997 -88787665 - AluY SINE Alu -17 294 1 300 341 109 44 chr4 95500997 95501009 -88787653 - MIR SINE MIR -50 212 202 3199 168 6 6 chr4 95501009 95501504 -88787158 - LTR42 LTR ERVL 0 495 1 300 341 109 44 chr4 95501504 95501682 -88786980 - MIR SINE MIR -60 202 6 2463 176 109 40 chr4 95501855 95502360 -88786302 - MLT1F LTR MaLR 0 542 3 23737 179 19 19 chr4 95503405 95509645 -88779017 + L1PA11 LINE L1 10 7612 0 2434 263 154 26 chr4 95509735 95511063 -88777599 + L2 LINE L2 1837 3313 0 194 354 20 27 chr4 95511062 95511209 -88777453 - L2 LINE L2 -600 2714 2569 * 234 319 53 44 chr4 95511508 95511621 -88777041 + L2 LINE L2 3139 3252 -20 340 279 91 45 chr4 95513766 95513920 -88774742 + MIR SINE MIR 59 219 -43 229 260 0 123 chr4 95513924 95513997 -88774665 - L2 LINE L2 0 3272 3209 221 299 60 0 chr4 95514781 95514848 -88773814 - MER91C DNA MER1_type -31 109 39 2243 101 3 0 chr4 95514848 95515136 -88773526 + AluSp SINE Alu 1 289 -24 23 0 0 0 chr4 95515137 95515160 -88773502 + AT_rich Low_complexity Low_complexity 1 23 0 687 298 76 46 chr4 95515368 95515803 -88772859 + L2 LINE L2 2535 3043 -270 2053 118 10 3 chr4 95515830 95516119 -88772543 + AluSc SINE Alu 1 291 -18 2862 83 11 0 chr4 95517038 95517387 -88771275 + THE1A LTR MaLR 3 355 0 12496 103 2 1 chr4 95517387 95518965 -88769697 + THE1A-int LTR MaLR 1 1580 0 2792 64 20 25 chr4 95518965 95519322 -88769340 + THE1A LTR MaLR 1 355 0 1165 151 10 0 chr4 95520808 95521007 -88767655 - L1MA9 LINE L1 -5 6307 6107 1243 121 0 0 chr4 95521007 95521180 -88767482 + AluY SINE Alu 126 298 -13 2901 134 33 47 chr4 95521180 95521625 -88767037 - L1MA9 LINE L1 -194 6118 5679 1460 186 3 90 chr4 95521625 95521959 -88766703 + AluSq SINE Alu 1 305 -8 2901 134 33 47 chr4 95521959 95522027 -88766635 - L1MA9 LINE L1 -633 5679 5612 * 2953 257 64 32 chr4 95522024 95522376 -88766286 - L1 LINE L1 -3618 3488 3149 2183 122 0 0 chr4 95522376 95522700 -88765962 - AluSx SINE Alu 0 324 1 2953 257 64 32 chr4 95522700 95524946 -88763716 - L1 LINE L1 -3957 3149 1 2478 195 7 58 chr4 95525666 95526215 -88762447 + MER74A LTR ERVL 38 558 0 433 286 97 71 chr4 95526302 95526683 -88761979 + L2 LINE L2 2920 3310 -3 243 242 0 0 chr4 95526846 95526908 -88761754 + L1ME LINE L1 5766 5827 -294 283 250 32 57 chr4 95526926 95527050 -88761612 + L1ME4a LINE L1 5774 5894 -227 226 316 96 0 chr4 95527114 95527250 -88761412 - MIR SINE MIR -22 240 92 27 49 0 0 chr4 95527288 95527329 -88761333 + AT_rich Low_complexity Low_complexity 1 41 0 26 88 0 0 chr4 95527349 95527417 -88761245 + AT_rich Low_complexity Low_complexity 1 68 0 3504 174 28 10 chr4 95527424 95528835 -88759827 - L1PA16 LINE L1 -8 6158 4550 280 296 0 45 chr4 95529934 95530022 -88758640 + L2 LINE L2 3189 3272 0 291 271 171 7 chr4 95530629 95530769 -88757893 - MIR SINE MIR -11 251 89 217 213 43 0 chr4 95531036 95531083 -88757579 + GA-rich Low_complexity Low_complexity 2 50 0 29241 117 12 54 chr4 95531466 95531866 -88756796 + L1PA7 LINE L1 12 427 -5727 195 42 0 0 chr4 95531866 95531890 -88756772 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 29241 117 12 54 chr4 95531890 95537909 -88750753 + L1PA7 LINE L1 427 6149 -5 4494 237 79 38 chr4 95538248 95539026 -88749636 + L1M4 LINE L1 3374 4118 -2028 854 185 133 20 chr4 95539026 95539221 -88749441 + MER20 DNA MER1_type 1 217 -2 4494 237 79 38 chr4 95539221 95539336 -88749326 + L1M4 LINE L1 4118 4227 -1919 2171 120 3 0 chr4 95539336 95539654 -88749008 - AluSx SINE Alu 0 312 1 4494 237 79 38 chr4 95539654 95540648 -88748014 + L1M4 LINE L1 4227 5340 -806 1235 177 44 0 chr4 95540741 95540967 -88747695 - MER46A DNA MER2_type 0 236 1 602 287 103 44 chr4 95541126 95541555 -88747107 + HAL1 LINE L1 10 463 -2044 898 156 49 27 chr4 95541560 95541785 -88746877 + Charlie1 DNA MER1_type 1903 2132 -629 307 278 0 9 chr4 95541872 95541980 -88746682 - L1MD3 LINE L1 -1441 6554 6448 337 273 31 16 chr4 95542182 95542428 -88746234 - L1M4 LINE L1 -992 5154 4902 29 28 0 0 chr4 95542428 95542464 -88746198 + AT_rich Low_complexity Low_complexity 1 36 0 212 111 44 44 chr4 95543759 95543804 -88744858 + (CAAAG)n Simple_repeat Simple_repeat 5 49 0 306 73 0 0 chr4 95544354 95544395 -88744267 + (CA)n Simple_repeat Simple_repeat 2 42 0 2892 166 57 42 chr4 95546135 95546817 -88741845 + LTR8A LTR ERV1 35 726 -1 3115 159 22 6 chr4 95546822 95547370 -88741292 - MER89 LTR ERV1 0 559 3 1573 229 118 68 chr4 95547736 95548485 -88740177 + LTR1B LTR ERV1 1 983 -37 1212 196 128 108 chr4 95548688 95549459 -88739203 + LTR48 LTR ERV1 1 787 0 327 293 61 20 chr4 95599619 95599766 -88688896 - HAL1 LINE L1 -1465 1042 890 244 326 22 44 chr4 95599800 95599981 -88688681 - HAL1 LINE L1 -1674 833 657 16048 37 0 3 chr4 95600664 95603396 -88685266 + L1PA3 LINE L1 3428 6155 0 1144 175 90 15 chr4 95603410 95603678 -88684984 + MLT1D LTR MaLR 130 417 -88 1705 186 58 13 chr4 95603678 95604054 -88684608 - MSTB LTR MaLR 0 426 34 23453 45 43 2 chr4 95604154 95607278 -88681384 - L1P LINE L1 -2893 3253 4 431 177 7 99 chr4 95607280 95607421 -88681241 - MLT1E2 LTR MaLR -498 128 1 593 215 82 118 chr4 95607901 95608171 -88680491 - MIR SINE MIR 0 262 3 3495 88 0 8 chr4 95608471 95608960 -88679702 - MER41A LTR ERV1 -69 485 1 19222 143 98 55 chr4 95608960 95610395 -88678267 - MER41A-int LTR ERV1 -3 5943 4572 2416 112 0 0 chr4 95610395 95610707 -88677955 - AluSp SINE Alu -1 312 1 19222 143 98 55 chr4 95610707 95613211 -88675451 - MER41A-int LTR ERV1 -1374 4572 2179 1979 88 88 0 chr4 95613211 95613484 -88675178 + AluY SINE Alu 1 297 -14 19222 143 98 55 chr4 95613484 95614105 -88674557 - MER41A-int LTR ERV1 -3767 2179 1587 1728 88 176 0 chr4 95614105 95614355 -88674307 + AluSp SINE Alu 1 294 -19 19222 143 98 55 chr4 95614355 95615403 -88673259 - MER41A-int LTR ERV1 -4359 1587 1 256 84 313 84 chr4 95615413 95615465 -88673197 - MER41A-int LTR ERV1 -7654 102 63 5676 139 30 33 chr4 95615465 95616539 -88672123 - MER11C LTR ERVK 0 1071 1 256 84 313 84 chr4 95616539 95616569 -88672093 - MER41A-int LTR ERV1 -7693 63 1 4314 81 0 0 chr4 95616655 95617209 -88671453 - MER41A LTR ERV1 0 554 1 455 323 26 36 chr4 95617343 95617538 -88671124 - MIR SINE MIR -38 224 32 803 244 68 10 chr4 95617661 95617866 -88670796 - MER20 DNA MER1_type -2 217 1 667 270 20 31 chr4 95618233 95618429 -88670233 + MIR3 SINE MIR 13 206 -2 626 283 68 22 chr4 95618431 95618753 -88669909 - MER46C DNA MER2_type -1 337 1 21 0 0 0 chr4 95618858 95618879 -88669783 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr4 95619642 95619662 -88669000 + (GA)n Simple_repeat Simple_repeat 1 20 0 394 323 82 39 chr4 95619835 95619917 -88668745 - L2 LINE L2 -33 3280 3203 1934 128 3 27 chr4 95619917 95620245 -88668417 - L1MA5 LINE L1 -9 6291 5972 394 323 82 39 chr4 95620245 95620444 -88668218 - L2 LINE L2 -110 3203 2987 1767 223 134 11 chr4 95621516 95621992 -88666670 - MLT1F LTR MaLR -3 539 5 194 308 206 19 chr4 95622291 95622398 -88666264 - L2 LINE L2 -1 3312 3186 2384 104 3 0 chr4 95623353 95623661 -88665001 + AluSc SINE Alu 1 309 0 599 306 16 11 chr4 95623809 95623992 -88664670 - MER5A DNA MER1_type 0 189 6 664 298 88 17 chr4 95624013 95624251 -88664411 + MIR SINE MIR 7 261 -1 251 330 169 8 chr4 95624823 95624941 -88663721 - MIR3 SINE MIR -60 148 12 1987 125 4 4 chr4 95624971 95625299 -88663363 + AluSg SINE Alu 1 328 0 344 303 135 14 chr4 95625642 95625850 -88662812 - MIR SINE MIR -12 250 18 219 319 0 0 chr4 95626020 95626089 -88662573 + L2 LINE L2 2456 2524 -790 817 222 79 34 chr4 95626190 95626629 -88662033 + MLT1E LTR MaLR 17 565 -2 224 336 28 9 chr4 95626673 95626780 -88661882 + L2 LINE L2 2682 2790 -524 1951 150 33 41 chr4 95626824 95627190 -88661472 - THE1B LTR MaLR -1 363 1 33 25 0 0 chr4 95627844 95627884 -88660778 + AT_rich Low_complexity Low_complexity 1 40 0 225 0 0 0 chr4 95627907 95627932 -88660730 + (TTCTCC)n Simple_repeat Simple_repeat 5 29 0 1777 166 39 0 chr4 95627936 95628220 -88660442 - AluJb SINE Alu -6 306 12 1158 210 198 29 chr4 95628781 95629200 -88659462 + L1ME3A LINE L1 5323 5812 -358 935 249 17 41 chr4 95629211 95629252 -88659410 + L1ME3A LINE L1 5862 5902 -268 1930 196 47 18 chr4 95629252 95629635 -88659027 - MSTD LTR MaLR 0 396 3 935 249 17 41 chr4 95629635 95629886 -88658776 + L1ME3A LINE L1 5902 6147 -23 935 217 54 51 chr4 95629986 95630387 -88658275 + MLT1A1 LTR MaLR 1 415 -13 217 178 22 22 chr4 95630420 95630465 -88658197 + L2 LINE L2 3188 3232 -81 721 281 14 28 chr4 95630682 95630899 -88657763 + MIR SINE MIR 49 262 0 445 269 0 50 chr4 95631026 95631167 -88657495 + MIR3 SINE MIR 67 200 -8 225 188 35 35 chr4 95631389 95631474 -88657188 + (CTAGT)n Simple_repeat Simple_repeat 4 88 0 567 315 60 20 chr4 95632662 95632964 -88655698 + L1ME4a LINE L1 5554 5867 -254 394 235 176 77 chr4 95633012 95633044 -88655618 - MIR SINE MIR -13 249 222 2163 163 6 6 chr4 95633044 95633388 -88655274 - MER2 DNA MER2_type 0 344 1 394 235 176 77 chr4 95633388 95633454 -88655208 - MIR SINE MIR -40 222 164 7356 117 58 19 chr4 95633454 95633893 -88654769 - Tigger3b DNA MER2_type -1797 1231 811 2067 114 0 0 chr4 95633893 95634166 -88654496 - AluSg SINE Alu -2 308 36 7356 117 58 19 chr4 95634166 95634910 -88653752 - Tigger3b DNA MER2_type -2217 811 2 394 235 176 77 chr4 95634910 95634980 -88653682 - MIR SINE MIR -98 164 63 321 308 65 101 chr4 95636458 95636705 -88651957 + MIR SINE MIR 20 257 -5 216 0 0 0 chr4 95636748 95636772 -88651890 + (TA)n Simple_repeat Simple_repeat 1 24 0 200 247 62 99 chr4 95637364 95637445 -88651217 - L2 LINE L2 -10 3262 3185 240 364 67 41 chr4 95638705 95638758 -88649904 - L2 LINE L2 -427 2887 2837 300 133 67 40 chr4 95638758 95638833 -88649829 + MER116 DNA Mariner 1 77 -3 240 364 67 41 chr4 95638833 95638974 -88649688 - L2 LINE L2 -477 2837 2688 386 328 113 21 chr4 95639054 95639389 -88649273 - L2 LINE L2 -704 2610 2245 2055 112 0 14 chr4 95639498 95639794 -88648868 - AluSc SINE Alu -17 292 1 445 263 0 0 chr4 95640035 95640130 -88648532 + MER58A DNA MER1_type 2 96 -11 1929 143 24 0 chr4 95640172 95640466 -88648196 - AluSx SINE Alu -11 301 1 508 82 0 0 chr4 95640542 95640615 -88648047 - L1MA6 LINE L1 0 6300 6228 589 227 30 0 chr4 95640615 95640747 -88647915 + MER58A DNA MER1_type 88 223 -1 272 306 186 8 chr4 95640747 95640871 -88647791 - MIR3 SINE MIR -47 161 16 1781 191 3 0 chr4 95641134 95641432 -88647230 + AluJb SINE Alu 1 299 -13 253 183 0 70 chr4 95642574 95642645 -88646017 - MIR SINE MIR -10 252 187 6054 76 7 0 chr4 95642976 95643728 -88644934 - L1PA8 LINE L1 -2 6170 5414 863 92 0 0 chr4 95643729 95643849 -88644813 - L1PA8 LINE L1 -921 5225 5106 363 261 8 67 chr4 95644459 95644578 -88644084 - L2 LINE L2 0 3313 3202 499 262 16 8 chr4 95644651 95644777 -88643885 - MLT1E LTR MaLR -466 127 1 291 214 27 125 chr4 95644782 95644827 -88643835 + MIR SINE MIR 162 210 -52 2133 134 3 0 chr4 95644827 95645133 -88643529 + AluSx SINE Alu 1 307 -5 291 214 27 125 chr4 95645133 95645199 -88643463 + MIR SINE MIR 210 262 0 198 143 0 0 chr4 95646523 95646558 -88642104 + (CATA)n Simple_repeat Simple_repeat 1 35 0 1630 136 112 41 chr4 95646616 95646955 -88641707 + THE1C LTR MaLR 1 363 -12 285 258 15 1 chr4 95647123 95647304 -88641358 + AluSp/q SINE Alu 166 303 0 235 287 124 39 chr4 95647562 95647691 -88640971 - MIR SINE MIR -6 256 117 314 252 168 0 chr4 95647738 95647845 -88640817 - MIR SINE MIR -56 206 82 9784 174 24 25 chr4 95648075 95650624 -88638038 + L1PA10 LINE L1 10 2561 -3922 2151 122 3 0 chr4 95650624 95650912 -88637750 + AluSx SINE Alu 5 293 -19 9784 174 24 25 chr4 95650912 95653548 -88635114 + L1PA10 LINE L1 2561 5363 -1120 2130 94 4 0 chr4 95653548 95653825 -88634837 + AluY SINE Alu 18 295 -16 9784 174 24 25 chr4 95653825 95654943 -88633719 + L1PA10 LINE L1 5363 6481 -2 458 196 0 11 chr4 95655019 95655111 -88633551 + Charlie4 DNA MER1_type 1818 1908 -53 478 261 9 0 chr4 95655226 95655341 -88633321 - Charlie8 DNA MER1_type -2227 190 75 1789 182 3 0 chr4 95655727 95656029 -88632633 + AluSx SINE Alu 1 303 -9 335 293 51 19 chr4 95656467 95656624 -88632038 - L1MC4a LINE L1 -1963 5845 5684 400 167 0 0 chr4 95656624 95656702 -88631960 + MER34C LTR ERV1 11 78 -464 1171 101 0 0 chr4 95656706 95656854 -88631808 + AluSq SINE Alu 116 263 -50 1467 203 107 40 chr4 95656860 95657309 -88631353 + MER34B LTR ERV1 87 565 0 312 334 113 34 chr4 95657309 95657662 -88631000 - L1MC4a LINE L1 -2121 5687 5307 311 304 10 0 chr4 95657725 95657827 -88630835 + LTR48B LTR ERV1 1 103 -541 * 1144 223 54 71 chr4 95657798 95658253 -88630409 + MER39 LTR ERV1 260 565 0 1143 268 71 49 chr4 95658641 95658845 -88629817 + L2 LINE L2 2450 2648 -665 1881 178 10 79 chr4 95658845 95659261 -88629401 + MLT1B LTR MaLR 1 387 -3 1143 268 71 49 chr4 95659261 95659891 -88628771 + L2 LINE L2 2648 3313 0 269 256 0 4 chr4 95659967 95660071 -88628591 - MER52A LTR ERV1 -4 1751 1601 690 285 100 90 chr4 95660077 95660874 -88627788 - MER52A LTR ERV1 -285 1470 666 2990 165 56 59 chr4 95660947 95661638 -88627024 + LTR8A LTR ERV1 1 689 -38 2397 86 0 0 chr4 95661661 95661965 -88626697 - AluY SINE Alu -7 304 1 21 71 0 0 chr4 95662185 95662227 -88626435 + AT_rich Low_complexity Low_complexity 1 42 0 344 193 0 0 chr4 95662355 95662434 -88626228 - AluJ/FRAM SINE Alu 0 304 226 807 203 7 0 chr4 95662514 95662662 -88626000 + AluJo SINE Alu 1 149 -163 538 120 0 0 chr4 95662662 95662737 -88625925 + LTR8 LTR ERV1 3 77 -614 5143 105 23 4 chr4 95662737 95663775 -88624887 - L1MA3 LINE L1 -132 7441 3253 275 167 0 0 chr4 95663775 95663823 -88624839 + L1M1 LINE L1 3017 3064 -4501 * 3774 125 10 14 chr4 95663815 95664408 -88624254 - L1M1 LINE L1 -5119 2446 1856 205 357 30 30 chr4 95664949 95665117 -88623545 - L2 LINE L2 -178 3094 2927 2153 141 0 0 chr4 95666161 95666460 -88622202 + AluSx SINE Alu 1 299 -13 42555 56 8 1 chr4 95667146 95673258 -88615404 - L1PA5 LINE L1 -1 6153 1 231 196 0 0 chr4 95674314 95674360 -88614302 + (TG)n Simple_repeat Simple_repeat 1 46 0 2854 102 64 79 chr4 95675583 95676205 -88612457 - MER4B LTR ERV1 0 779 4 186 344 16 47 chr4 95676588 95676716 -88611946 + MIR SINE MIR 107 230 -32 2220 225 45 26 chr4 95677185 95677713 -88610949 - MER34 LTR ERV1 0 542 5 518 208 221 13 chr4 95678926 95679080 -88609582 + MER5A DNA MER1_type 4 189 0 1309 173 63 116 chr4 95679187 95679488 -88609174 + AluJo SINE Alu 1 285 -17 299 25 25 0 chr4 95679488 95679528 -88609134 + (CAAGG)n Simple_repeat Simple_repeat 2 42 0 1525 190 7 29 chr4 95680146 95680456 -88608206 - AluJo SINE Alu -9 303 1 230 330 46 18 chr4 95681620 95681729 -88606933 - MER5B DNA MER1_type -2 176 65 746 187 0 8 chr4 95682042 95682165 -88606497 + FLAM_C SINE Alu 3 124 -9 255 335 104 52 chr4 95683344 95683517 -88605145 + MIR3 SINE MIR 11 192 -16 276 341 0 0 chr4 95684389 95684471 -88604191 - L3 LINE CR1 -3 1574 1493 1776 186 0 3 chr4 95684545 95684857 -88603805 + AluJb SINE Alu 1 311 -1 439 239 0 0 chr4 95684879 95684971 -88603691 + MER97a DNA MER1_type? 88 179 -715 1858 172 9 12 chr4 95685007 95685333 -88603329 + MLT1A1 LTR MaLR 10 334 -31 259 265 66 46 chr4 95685740 95685891 -88602771 + LTR50 LTR ERVL 1 154 -641 207 0 0 0 chr4 95685911 95685934 -88602728 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 235 245 0 0 chr4 95686077 95686126 -88602536 + LTR33A LTR ERVL 475 523 0 501 189 156 0 chr4 95686912 95687034 -88601628 - MER20 DNA MER1_type -18 201 61 326 150 17 0 chr4 95687093 95687150 -88601512 - MLT2D LTR ERVL 0 397 349 396 111 0 0 chr4 95687156 95687228 -88601434 + (TG)n Simple_repeat Simple_repeat 2 73 0 1387 203 16 98 chr4 95687237 95687616 -88601046 - MLT2D LTR ERVL -64 350 3 204 164 91 55 chr4 95687618 95687673 -88600989 - L2 LINE L2 -66 3206 3150 1770 226 47 33 chr4 95687697 95687720 -88600942 - MLT1G LTR MaLR 0 590 569 2496 102 28 25 chr4 95687720 95688083 -88600579 - THE1B LTR MaLR 0 364 1 1770 226 47 33 chr4 95688083 95688628 -88600034 - MLT1G LTR MaLR -21 569 42 454 93 23 0 chr4 95688650 95688736 -88599926 + (TCTA)n Simple_repeat Simple_repeat 3 90 0 538 277 44 6 chr4 95688808 95688967 -88599695 + L1MB7 LINE L1 6011 6175 -9 2399 103 0 0 chr4 95689041 95689351 -88599311 - AluY SINE Alu -1 310 1 249 139 0 0 chr4 95690171 95690214 -88598448 + (GA)n Simple_repeat Simple_repeat 2 44 0 1633 131 127 4 chr4 95690427 95690695 -88597967 + AluSx SINE Alu 1 301 -11 390 329 0 15 chr4 95692350 95692487 -88596175 - MIR SINE MIR -79 183 49 367 240 219 20 chr4 95693310 95693456 -88595206 + MER5B DNA MER1_type 4 178 0 621 211 14 14 chr4 95693592 95693739 -88594923 - L1MB8 LINE L1 -4 6174 6028 441 202 0 32 chr4 95693810 95693904 -88594758 + MER63 DNA MER1_type 675 765 -297 1339 219 79 6 chr4 95695153 95695468 -88593194 - MER58B DNA MER1_type 0 341 4 373 327 83 15 chr4 95695683 95695888 -88592774 - MIR SINE MIR -13 249 31 588 272 88 35 chr4 95695946 95696174 -88592488 - MIR SINE MIR 0 262 23 403 221 105 79 chr4 95697533 95697800 -88590862 + L1MC4 LINE L1 7767 8040 -2 375 285 77 39 chr4 95697809 95698016 -88590646 - L1ME4a LINE L1 -14 6107 5893 211 273 0 45 chr4 95698615 95698681 -88589981 - MIR SINE MIR -119 143 81 208 319 110 11 chr4 95698697 95698788 -88589874 + L2 LINE L2 3157 3256 -16 197 300 43 14 chr4 95698797 95698867 -88589795 - MIR3 SINE MIR -127 81 10 218 208 21 97 chr4 95699677 95699821 -88588841 + (TCTCTG)n Simple_repeat Simple_repeat 4 136 0 337 274 81 16 chr4 95700627 95700751 -88587911 + MER117 DNA MER1_type 66 197 0 256 335 83 24 chr4 95701109 95701363 -88587299 + L2 LINE L2 2812 3080 -192 2380 63 33 0 chr4 95701755 95702056 -88586606 + AluY SINE Alu 1 311 0 576 335 136 36 chr4 95702075 95702606 -88586056 + L3 LINE CR1 891 1474 -103 348 93 130 0 chr4 95702647 95702701 -88585961 - MER5A DNA MER1_type -120 69 9 430 260 80 68 chr4 95702714 95702964 -88585698 - MER112 DNA MER1_type -6 254 2 2295 114 0 0 chr4 95703691 95703989 -88584673 + AluSq SINE Alu 1 298 -15 1362 162 152 8 chr4 95704145 95704539 -88584123 + MER69 DNA AcHobo 2064 2514 -12 2038 146 0 0 chr4 95704594 95704889 -88583773 + AluSx SINE Alu 1 295 -17 195 289 72 54 chr4 95705015 95705181 -88583481 + L2 LINE L2 2788 2956 -358 360 64 0 0 chr4 95705249 95705296 -88583366 + (TC)n Simple_repeat Simple_repeat 1 47 0 413 247 24 57 chr4 95705793 95705948 -88582714 - MER20B DNA MER1_type -23 196 43 686 290 97 22 chr4 95705986 95706348 -88582314 - L1P4 LINE L1 -379 5784 5394 556 335 20 16 chr4 95708345 95708590 -88580072 - MIR SINE MIR -2 260 15 21 0 0 0 chr4 95708680 95708701 -88579961 + AT_rich Low_complexity Low_complexity 1 21 0 1699 158 55 99 chr4 95709214 95709506 -88579156 - MLT1B LTR MaLR 0 390 119 2239 112 3 0 chr4 95709506 95709802 -88578860 - AluSq SINE Alu -16 297 1 1699 158 55 99 chr4 95709802 95709913 -88578749 - MLT1B LTR MaLR -271 119 5 379 313 78 30 chr4 95710428 95710594 -88578068 - MIR3 SINE MIR -19 189 16 2071 192 90 66 chr4 95711227 95711836 -88576826 - MLT1E3 LTR MaLR 0 624 1 22 0 0 0 chr4 95711975 95711997 -88576665 + AT_rich Low_complexity Low_complexity 1 22 0 2895 150 40 2 chr4 95712137 95712589 -88576073 - MER1A DNA MER1_type 0 529 61 1957 124 131 0 chr4 95712944 95713242 -88575420 - MER1B DNA MER1_type 0 337 1 338 357 63 36 chr4 95713334 95713583 -88575079 - L2 LINE L2 -146 3126 2871 688 229 34 46 chr4 95713583 95713758 -88574904 + MER5A DNA MER1_type 1 173 -16 410 108 12 0 chr4 95713842 95713925 -88574737 + (TA)n Simple_repeat Simple_repeat 2 85 0 2071 126 0 0 chr4 95714273 95714559 -88574103 + AluSx SINE Alu 1 286 -26 26 30 0 0 chr4 95714562 95714595 -88574067 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr4 95714736 95714764 -88573898 + AT_rich Low_complexity Low_complexity 1 28 0 241 329 18 59 chr4 95716315 95716485 -88572177 - L3b LINE CR1 -305 1278 1116 970 27 0 0 chr4 95717338 95717450 -88571212 - AluY SINE Alu -5 306 195 401 209 52 72 chr4 95718175 95718328 -88570334 + L2 LINE L2 3108 3257 -56 1540 135 142 21 chr4 95718544 95718826 -88569836 - MER61A LTR ERV1 0 343 28 586 282 98 26 chr4 95719545 95719779 -88568883 - MIR SINE MIR -6 256 6 284 275 77 22 chr4 95720536 95720627 -88568035 - MIR3 SINE MIR -6 202 107 584 331 57 32 chr4 95720785 95721033 -88567629 + MIR SINE MIR 5 258 -4 2277 72 4 0 chr4 95722293 95722604 -88566058 - AluSc SINE Alu 0 312 1 2246 87 0 13 chr4 95722724 95723022 -88565640 - AluSc SINE Alu -15 294 1 189 74 0 0 chr4 95723868 95723895 -88564767 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 2013 193 59 45 chr4 95724128 95724621 -88564041 + MLT1D LTR MaLR 1 500 -5 2236 105 0 0 chr4 95724621 95724915 -88563747 + AluSx SINE Alu 1 294 -18 2252 85 3 50 chr4 95726028 95726346 -88562316 - AluSc SINE Alu -6 303 1 689 254 93 41 chr4 95726448 95726739 -88561923 + L2 LINE L2 3004 3309 -4 202 343 85 76 chr4 95727242 95727583 -88561079 + L2 LINE L2 2913 3256 -16 1795 152 25 14 chr4 95728033 95728316 -88560346 + AluJb SINE Alu 1 286 -26 26 30 0 0 chr4 95728474 95728507 -88560155 + AT_rich Low_complexity Low_complexity 1 33 0 1015 303 131 22 chr4 95730571 95731030 -88557632 - L2 LINE L2 0 3313 2805 1720 251 51 24 chr4 95731132 95731582 -88557080 - LTR40b LTR ERVL 0 462 1 330 264 185 28 chr4 95731703 95731881 -88556781 - L2 LINE L2 -805 2509 2304 230 290 91 13 chr4 95732131 95732195 -88556467 - L1ME4a LINE L1 -121 6000 5942 315 0 0 0 chr4 95732195 95732230 -88556432 + (CA)n Simple_repeat Simple_repeat 2 36 0 230 290 91 13 chr4 95732230 95732396 -88556266 - L1ME4a LINE L1 -179 5942 5752 293 138 17 0 chr4 95732409 95732467 -88556195 - L1MC4 LINE L1 0 8042 7984 4222 230 101 21 chr4 95732470 95733390 -88555272 - L1MC4 LINE L1 -143 7899 6841 1585 151 3 78 chr4 95733390 95733709 -88554953 - AluJb SINE Alu -17 295 1 4222 230 101 21 chr4 95733709 95734108 -88554554 - L1MC4 LINE L1 -1201 6841 6475 457 244 35 0 chr4 95735616 95735731 -88552931 - MER103 DNA DNA -44 122 4 264 316 123 9 chr4 95736970 95737084 -88551578 + MIR SINE MIR 118 244 -18 21 36 0 0 chr4 95737310 95737338 -88551324 + AT_rich Low_complexity Low_complexity 1 28 0 213 65 0 0 chr4 95737463 95737494 -88551168 + (TG)n Simple_repeat Simple_repeat 2 32 0 237 163 82 0 chr4 95738673 95738722 -88549940 + MER91B DNA MER1_type 78 130 -60 639 254 102 11 chr4 95738803 95739078 -88549584 - L1MC4 LINE L1 -1 8041 7742 235 280 0 0 chr4 95739078 95739128 -88549534 + MER91B DNA MER1_type 133 182 -8 512 0 80 0 chr4 95740394 95740482 -88548180 + (TA)n Simple_repeat Simple_repeat 2 96 0 2170 131 0 0 chr4 95741251 95741563 -88547099 - AluSx SINE Alu 0 312 1 1401 225 26 0 chr4 95741920 95742231 -88546431 + L1ME LINE L1 5428 5746 -416 2072 123 0 0 chr4 95744141 95744463 -88544199 + AluSx SINE Alu 1 322 0 24 0 0 0 chr4 95744649 95744673 -88543989 + AT_rich Low_complexity Low_complexity 1 24 0 237 132 0 0 chr4 95744824 95744862 -88543800 + (TA)n Simple_repeat Simple_repeat 2 39 0 321 218 0 0 chr4 95745341 95745396 -88543266 + Tigger5 DNA MER2_type 1 55 -2268 520 200 0 0 chr4 95745403 95745493 -88543169 + Tigger5 DNA MER2_type 2234 2323 0 1016 180 138 24 chr4 95745864 95746153 -88542509 - MER5C DNA MER1_type 0 324 3 404 162 14 0 chr4 95746671 95746745 -88541917 + ERVL-C1 LTR ERVL 2111 2185 -3579 13320 118 59 52 chr4 95746746 95747544 -88541118 - Tigger1 DNA MER2_type 0 2418 1627 1783 160 4 0 chr4 95747544 95747848 -88540814 - AluSg SINE Alu 0 305 1 13320 118 59 52 chr4 95747848 95748881 -88539781 - Tigger1 DNA MER2_type -791 1627 562 2173 81 0 52 chr4 95748881 95749190 -88539472 + AluY SINE Alu 2 294 -17 13320 118 59 52 chr4 95749190 95749757 -88538905 - Tigger1 DNA MER2_type -1856 562 1 5123 153 14 11 chr4 95750166 95751017 -88537645 + ERVL-C1 LTR ERVL 2185 3038 -2726 4141 194 30 6 chr4 95751029 95751829 -88536833 + ERVL-C1 LTR ERVL 4568 5386 -378 210 213 21 0 chr4 95751829 95751876 -88536786 + (TA)n Simple_repeat Simple_repeat 1 48 0 681 180 145 95 chr4 95751887 95752134 -88536528 + ERVL-C1 LTR ERVL 5460 5724 -40 2206 115 0 0 chr4 95752134 95752439 -88536223 + AluSx SINE Alu 1 305 -7 681 180 145 95 chr4 95752439 95752474 -88536188 + ERVL-C1 LTR ERVL 5724 5756 -8 1808 203 40 13 chr4 95752474 95752853 -88535809 + MLT2C1 LTR ERVL 1 389 -8 23 33 0 0 chr4 95752894 95752924 -88535738 + AT_rich Low_complexity Low_complexity 1 30 0 314 253 91 32 chr4 95753074 95753228 -88535434 - L1MC4a LINE L1 -1837 5971 5809 443 246 79 0 chr4 95753255 95753369 -88535293 + MER94 DNA DNA 12 134 0 604 258 52 31 chr4 95753378 95753607 -88535055 - L1MC4a LINE L1 -372 5749 5516 275 235 148 0 chr4 95753935 95754050 -88534612 - L1P LINE L1 -1906 4240 4109 874 174 27 49 chr4 95754116 95754300 -88534362 - MER7A DNA MER2_type 0 336 157 254 48 0 119 chr4 95754300 95754342 -88534320 - MER7A DNA MER2_type -119 227 191 * 458 154 161 63 chr4 95754309 95754553 -88534109 - MER7A DNA MER2_type -98 248 1 1820 167 0 16 chr4 95754804 95755116 -88533546 + AluSx SINE Alu 1 307 -5 212 200 100 0 chr4 95755142 95755202 -88533460 + MER91C DNA MER1_type 33 98 -42 * 215 185 0 93 chr4 95755197 95755251 -88533411 - MER91C DNA MER1_type -59 81 33 505 119 48 0 chr4 95755449 95755533 -88533129 - AluSg/x SINE Alu -9 301 214 23 33 0 0 chr4 95755698 95755728 -88532934 + AT_rich Low_complexity Low_complexity 1 30 0 1213 187 78 0 chr4 95756701 95756920 -88531742 - MER46A DNA MER2_type 0 236 1 28 48 0 0 chr4 95757264 95757306 -88531356 + AT_rich Low_complexity Low_complexity 1 42 0 332 264 0 11 chr4 95757681 95757768 -88530894 - MIR3 SINE MIR -3 205 120 265 389 42 18 chr4 95758300 95758467 -88530195 - MIR SINE MIR -60 202 32 26 0 0 0 chr4 95758496 95758522 -88530140 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr4 95759145 95759173 -88529489 + AT_rich Low_complexity Low_complexity 1 28 0 2095 130 0 3 chr4 95759177 95759478 -88529184 + AluSx SINE Alu 1 300 -12 21 0 0 0 chr4 95760389 95760410 -88528252 + AT_rich Low_complexity Low_complexity 1 21 0 255 241 164 69 chr4 95760681 95760797 -88527865 - MIR3 SINE MIR -11 197 71 225 310 58 23 chr4 95760792 95760879 -88527783 + MIR3 SINE MIR 8 97 -111 * 216 390 11 0 chr4 95761067 95761162 -88527500 + MIR3 SINE MIR 111 206 -2 180 176 0 0 chr4 95761411 95761445 -88527217 + (TA)n Simple_repeat Simple_repeat 1 34 0 44 35 0 0 chr4 95761866 95761924 -88526738 + AT_rich Low_complexity Low_complexity 1 58 0 248 327 109 38 chr4 95762192 95762531 -88526131 - L2 LINE L2 -5 3308 2946 445 270 126 4 chr4 95762587 95762817 -88525845 + MIR SINE MIR 3 260 -2 1955 120 31 3 chr4 95763417 95763708 -88524954 + AluSx SINE Alu 1 299 -13 472 262 59 55 chr4 95763816 95764018 -88524644 + L1MC4a LINE L1 5702 5904 -1904 21 57 0 0 chr4 95764527 95764562 -88524100 + AT_rich Low_complexity Low_complexity 1 35 0 2980 167 70 46 chr4 95765767 95766436 -88522226 + Tigger6a DNA MER2_type 1 685 -398 291 299 15 52 chr4 95766676 95766810 -88521852 + MIR SINE MIR 74 202 -60 2421 74 0 3 chr4 95767179 95767478 -88521184 - AluSq SINE Alu -15 298 1 1164 173 23 14 chr4 95767583 95767803 -88520859 - AluJo SINE Alu -82 230 9 241 167 30 15 chr4 95769027 95769093 -88519569 + (CCCCG)n Simple_repeat Simple_repeat 5 71 0 234 257 10 89 chr4 95769582 95769599 -88519063 + L2 LINE L2 1698 1715 -1599 1389 127 76 29 chr4 95769599 95769875 -88518787 + AluJo SINE Alu 3 291 -21 234 257 10 89 chr4 95769875 95769958 -88518704 + L2 LINE L2 1715 1790 -1524 530 303 135 38 chr4 95769979 95770702 -88517960 + L2 LINE L2 2479 3313 0 183 129 0 0 chr4 95771700 95771731 -88516931 + (TA)n Simple_repeat Simple_repeat 2 32 0 22 0 0 0 chr4 95776058 95776080 -88512582 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 95776096 95776126 -88512536 + AT_rich Low_complexity Low_complexity 1 30 0 191 304 43 14 chr4 95776424 95776493 -88512169 - L3b LINE CR1 -70 1513 1443 202 325 150 3 chr4 95776600 95776705 -88511957 - MIR SINE MIR -72 136 20 817 149 25 56 chr4 95776723 95776884 -88511778 - MER20 DNA MER1_type -32 187 32 266 227 204 11 chr4 95777124 95777212 -88511450 - MIR SINE MIR -1 261 157 881 227 130 5 chr4 95777217 95777450 -88511212 + MIR SINE MIR 13 262 0 340 256 186 8 chr4 95777462 95777591 -88511071 - MIR SINE MIR -110 152 1 484 213 63 16 chr4 95777856 95777983 -88510679 + MER104 DNA Tc2 48 180 0 193 281 62 16 chr4 95778016 95778080 -88510582 - MIR SINE MIR 0 262 196 867 135 0 35 chr4 95778509 95778650 -88510012 + Tigger4(Zombi) DNA MER2_type 1 136 -2595 * 3299 101 72 23 chr4 95778627 95779153 -88509509 + Tigger4(Zombi) DNA MER2_type 2179 2730 -1 215 308 92 15 chr4 95780561 95780626 -88508036 - MIR3 SINE MIR -125 83 14 415 310 146 34 chr4 95780787 95781026 -88507636 - L3 LINE CR1 -2 1575 1310 21 36 0 0 chr4 95781186 95781214 -88507448 + AT_rich Low_complexity Low_complexity 1 28 0 403 284 25 31 chr4 95781444 95781606 -88507056 - L1MC4a LINE L1 -1919 5889 5729 1743 156 3 39 chr4 95781888 95782196 -88506466 + AluJo SINE Alu 2 298 -14 626 154 86 44 chr4 95782401 95782596 -88506066 + MER6 DNA MER2_type -65 865 0 321 286 0 0 chr4 95783779 95783849 -88504813 - MIR SINE MIR -107 155 86 338 298 58 10 chr4 95783964 95784068 -88504594 + L2 LINE L2 3187 3295 -18 5609 217 38 34 chr4 95785359 95786981 -88501681 - L1MD1 LINE L1 -59 6577 4935 2232 108 3 0 chr4 95786981 95787277 -88501385 - AluSp SINE Alu -16 297 1 5609 217 38 34 chr4 95787277 95788343 -88500319 - L1MD1 LINE L1 -1701 4935 3874 2287 136 109 3 chr4 95788356 95788731 -88499931 - MSTB2 LTR MaLR 0 457 43 3369 41 2 0 chr4 95788734 95789147 -88499515 + L1PA5 LINE L1 5733 6146 -8 180 97 0 0 chr4 95789154 95789185 -88499477 + (TAAAAA)n Simple_repeat Simple_repeat 6 36 0 7942 191 77 114 chr4 95789210 95789706 -88498956 - L1MD1 LINE L1 -2672 3868 3356 1807 87 0 0 chr4 95789706 95789935 -88498727 - AluY SINE Alu -82 229 1 7942 191 77 114 chr4 95789935 95790645 -88498017 - L1MD1 LINE L1 -3184 3356 2622 1723 174 7 10 chr4 95790645 95790933 -88497729 - AluJb SINE Alu -20 292 6 7942 191 77 114 chr4 95790933 95791351 -88497311 - L1MD1 LINE L1 -3918 2622 2190 2070 90 14 11 chr4 95791351 95791652 -88497010 + AluSc SINE Alu 1 302 0 7942 191 77 114 chr4 95791652 95791788 -88496874 - L1MD1 LINE L1 -4350 2190 2051 988 178 30 3 chr4 95791788 95792056 -88496606 - MLT1A1 LTR MaLR 0 365 15 7942 191 77 114 chr4 95792056 95793801 -88494861 - L1MD1 LINE L1 -4489 2051 225 2095 116 0 7 chr4 95793801 95794112 -88494550 + AluSg1 SINE Alu 1 309 0 7942 191 77 114 chr4 95794112 95794313 -88494349 - L1MD1 LINE L1 -6315 225 18 199 305 114 67 chr4 95794540 95794645 -88494017 + MIR SINE MIR 81 190 -72 23 0 0 0 chr4 95795078 95795101 -88493561 + AT_rich Low_complexity Low_complexity 1 23 0 27 62 0 0 chr4 95796098 95796146 -88492516 + AT_rich Low_complexity Low_complexity 1 48 0 22 70 0 0 chr4 95796895 95796938 -88491724 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr4 95797034 95797062 -88491600 + AT_rich Low_complexity Low_complexity 1 28 0 719 204 0 22 chr4 95798199 95798336 -88490326 - AluJo SINE Alu -178 134 1 273 282 35 12 chr4 95798811 95798896 -88489766 + L2 LINE L2 3184 3270 -2 357 305 25 8 chr4 95799073 95799191 -88489471 - L2 LINE L2 -1 3312 3193 980 185 51 102 chr4 95799270 95799538 -88489124 + MER46C DNA MER2_type 1 248 -90 1381 214 74 19 chr4 95799538 95799861 -88488801 + MER2 DNA MER2_type 3 343 -1 980 185 51 102 chr4 95799861 95799944 -88488718 + MER46C DNA MER2_type 248 334 -4 321 298 143 1 chr4 95799949 95800106 -88488556 - MIR SINE MIR -42 220 43 * 615 323 70 8 chr4 95800094 95800351 -88488311 - L2 LINE L2 0 3313 3041 324 361 74 13 chr4 95802654 95802884 -88485778 + L2 LINE L2 1244 1487 -1827 22 0 0 0 chr4 95803241 95803263 -88485399 + AT_rich Low_complexity Low_complexity 1 22 0 2051 125 0 0 chr4 95803585 95803888 -88484774 - AluSx SINE Alu 0 305 3 491 365 95 11 chr4 95805379 95805757 -88482905 + L1MEc LINE L1 1408 1817 -4579 325 245 31 88 chr4 95805780 95805972 -88482690 + L1MC5 LINE L1 7755 7935 -26 320 291 72 46 chr4 95805977 95806451 -88482211 + L1MEc LINE L1 2558 3043 -3172 4023 186 47 30 chr4 95806453 95807670 -88480992 + L1MB8 LINE L1 4921 6168 -10 1934 106 65 20 chr4 95807802 95808095 -88480567 - AluSq SINE Alu -7 306 1 27 0 0 0 chr4 95808386 95808413 -88480249 + AT_rich Low_complexity Low_complexity 1 27 0 336 270 175 66 chr4 95808930 95809010 -88479652 + HAL1b LINE L1 64 134 -1214 2226 110 13 0 chr4 95809010 95809318 -88479344 + AluSx SINE Alu 1 312 0 336 270 175 66 chr4 95809318 95809717 -88478945 + HAL1b LINE L1 134 329 -1019 439 264 118 34 chr4 95809720 95810069 -88478593 + HAL1b LINE L1 365 742 -606 2064 120 21 0 chr4 95810284 95810575 -88478087 + AluSx SINE Alu 1 297 -15 3535 210 112 83 chr4 95810730 95811534 -88477128 + L1MC4 LINE L1 6489 7268 -774 2274 77 3 3 chr4 95811534 95811820 -88476842 + AluY SINE Alu 2 287 -24 3535 210 112 83 chr4 95811820 95811941 -88476721 + L1MC4 LINE L1 7268 7384 -658 1797 158 21 3 chr4 95811941 95812225 -88476437 + AluJb SINE Alu 1 289 -23 3535 210 112 83 chr4 95812225 95812297 -88476365 + L1MC4 LINE L1 7384 7452 -590 921 107 0 50 chr4 95812297 95812437 -88476225 + FLAM_C SINE Alu 1 133 0 3535 210 112 83 chr4 95812437 95812474 -88476188 + L1MC4 LINE L1 7452 7486 -556 1451 89 48 97 chr4 95812474 95812722 -88475940 + AluSx SINE Alu 1 236 -76 3535 210 112 83 chr4 95812722 95813086 -88475576 + L1MC4 LINE L1 7486 7931 -111 361 41 0 0 chr4 95813225 95813274 -88475388 + L1MC4 LINE L1 7989 8037 -5 490 217 72 24 chr4 95813348 95813514 -88475148 + L1MC5 LINE L1 6981 7154 -807 2206 118 0 0 chr4 95813578 95813866 -88474796 + AluSx SINE Alu 1 288 -24 201 74 0 0 chr4 95813873 95813900 -88474762 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 2187 120 7 0 chr4 95814809 95815118 -88473544 + AluSx SINE Alu 1 311 -1 27 0 0 0 chr4 95815225 95815252 -88473410 + AT_rich Low_complexity Low_complexity 1 27 0 272 252 130 0 chr4 95815272 95815423 -88473239 - L1MC/D LINE L1 -297 5824 5718 24 0 0 0 chr4 95815436 95815460 -88473202 + AT_rich Low_complexity Low_complexity 1 24 0 492 248 32 24 chr4 95816096 95816221 -88472441 + L2 LINE L2 3187 3312 -1 378 273 91 0 chr4 95816222 95816310 -88472352 - MIR SINE MIR -117 145 50 25 31 0 0 chr4 95816587 95816619 -88472043 + AT_rich Low_complexity Low_complexity 1 32 0 265 356 96 5 chr4 95817557 95817765 -88470897 - MIR SINE MIR -6 256 30 767 213 120 37 chr4 95818014 95818230 -88470432 - MIR SINE MIR -7 255 22 4503 138 45 44 chr4 95818322 95819059 -88469603 + L1MB2 LINE L1 5080 5822 -349 2331 82 0 16 chr4 95819059 95819375 -88469287 - AluSx SINE Alu -1 311 1 4503 138 45 44 chr4 95819375 95819725 -88468937 + L1MB2 LINE L1 5822 6170 -1 464 271 40 99 chr4 95819959 95820232 -88468430 + MIR SINE MIR 6 262 0 401 285 118 94 chr4 95820620 95820992 -88467670 - L1M2 LINE L1 -5543 1306 757 230 238 10 30 chr4 95821114 95821215 -88467447 + (CGG)n Simple_repeat Simple_repeat 2 100 0 22 35 0 0 chr4 95821253 95821282 -88467380 + GC_rich Low_complexity Low_complexity 1 29 0 304 324 117 75 chr4 95824295 95824576 -88464086 + L1M2 LINE L1 586 878 -5971 2163 86 11 0 chr4 95826026 95826304 -88462358 + AluSg SINE Alu 2 282 -28 556 287 109 13 chr4 95826683 95826913 -88461749 + MIR SINE MIR 11 262 0 1486 171 32 0 chr4 95827337 95827589 -88461073 + AluJo SINE Alu 40 299 -13 211 238 95 76 chr4 95828043 95828148 -88460514 + MIR SINE MIR 69 175 -87 1359 136 22 173 chr4 95828648 95828739 -88459923 - MER2 DNA MER2_type 0 344 241 2078 131 0 0 chr4 95828739 95829030 -88459632 + AluSx SINE Alu 1 291 -21 1359 136 22 173 chr4 95829030 95829052 -88459610 - MER2 DNA MER2_type -103 241 217 1561 170 22 29 chr4 95829052 95829328 -88459334 + AluJo SINE Alu 5 278 -34 1359 136 22 173 chr4 95829328 95829618 -88459044 - MER2 DNA MER2_type -127 217 1 1843 154 0 4 chr4 95830054 95830333 -88458329 + AluSx SINE Alu 1 278 -34 207 0 0 0 chr4 95830337 95830360 -88458302 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 1268 171 22 121 chr4 95830540 95830944 -88457718 - MLT1A1 LTR MaLR 0 365 2 856 226 175 36 chr4 95830962 95831294 -88457368 + MLT1J LTR MaLR 128 505 -6 1936 110 44 110 chr4 95831506 95831673 -88456989 + THE1B LTR MaLR 1 178 -186 1903 114 37 44 chr4 95831673 95831970 -88456692 - AluSx SINE Alu -17 295 1 1936 110 44 110 chr4 95831970 95832192 -88456470 + THE1B LTR MaLR 178 364 0 5221 58 27 1 chr4 95832527 95833198 -88455464 + L1PA5 LINE L1 5467 6154 0 27 62 0 0 chr4 95833198 95833246 -88455416 + AT_rich Low_complexity Low_complexity 1 48 0 5581 142 32 6 chr4 95833816 95835054 -88453608 + L1PB2 LINE L1 4890 6148 -3 2328 101 7 0 chr4 95835914 95836220 -88452442 - AluSg SINE Alu -2 308 1 22 88 0 0 chr4 95836516 95836573 -88452089 + AT_rich Low_complexity Low_complexity 1 57 0 2244 112 3 0 chr4 95836770 95837065 -88451597 - AluSx SINE Alu -14 298 3 2317 101 0 0 chr4 95837320 95837617 -88451045 - AluSq SINE Alu -16 297 1 724 278 13 9 chr4 95838347 95838574 -88450088 + L1MC4 LINE L1 5682 5909 -1899 22 35 0 0 chr4 95838636 95838665 -88449997 + AT_rich Low_complexity Low_complexity 1 29 0 268 227 13 13 chr4 95838683 95838758 -88449904 + L1MC4 LINE L1 6938 7012 -1030 262 224 26 40 chr4 95838813 95838889 -88449773 + GA-rich Low_complexity Low_complexity 2 76 0 1069 178 182 12 chr4 95838970 95839217 -88449445 + AluJo SINE Alu 1 289 -13 392 245 7 36 chr4 95839224 95839363 -88449299 + L1MC5 LINE L1 7026 7160 -801 486 251 63 93 chr4 95839558 95840096 -88448566 + L1MC5 LINE L1 7261 7782 -179 21 0 0 0 chr4 95840318 95840339 -88448323 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr4 95840840 95840878 -88447784 + AT_rich Low_complexity Low_complexity 1 38 0 2026 134 3 3 chr4 95841688 95841987 -88446675 - AluSq SINE Alu -14 299 1 198 296 80 70 chr4 95842386 95842585 -88446077 + L2 LINE L2 2919 3119 -194 530 280 7 21 chr4 95842845 95842988 -88445674 + MER5B DNA MER1_type 38 178 0 721 292 127 3 chr4 95843143 95843530 -88445132 + L2 LINE L2 1729 2163 -1151 1688 139 110 0 chr4 95843611 95843920 -88444742 + MER2 DNA MER2_type 1 343 -1 21 57 0 0 chr4 95844410 95844445 -88444217 + AT_rich Low_complexity Low_complexity 1 35 0 28 0 0 0 chr4 95844691 95844719 -88443943 + AT_rich Low_complexity Low_complexity 1 28 0 1770 151 7 25 chr4 95844726 95845011 -88443651 - AluJb SINE Alu -23 289 10 18753 186 25 9 chr4 95845473 95850679 -88437983 + L1PA13 LINE L1 1 5327 -1487 2143 88 0 56 chr4 95850679 95850985 -88437677 + AluSc SINE Alu 1 289 -20 18753 186 25 9 chr4 95850985 95852493 -88436169 + L1PA13 LINE L1 5327 6809 -5 2043 207 85 11 chr4 95852534 95853190 -88435472 - Zaphod DNA AcHobo -45 3986 3282 579 261 90 65 chr4 95853185 95853430 -88435232 - Zaphod DNA AcHobo -3364 667 417 * 714 263 75 62 chr4 95854229 95854537 -88434125 - L2 LINE L2 0 3313 3002 240 185 5 37 chr4 95854539 95854612 -88434050 - L1MC4 LINE L1 0 8042 7925 2719 211 214 55 chr4 95854616 95855719 -88432943 - L1MC4 LINE L1 -144 7898 6596 2402 83 0 0 chr4 95855719 95856019 -88432643 + AluY SINE Alu 1 300 -11 2719 211 214 55 chr4 95856019 95856088 -88432574 - L1MC4 LINE L1 -1446 6596 6539 200 190 0 69 chr4 95856863 95856921 -88431741 + GA-rich Low_complexity Low_complexity 4 57 0 27 0 0 0 chr4 95856926 95856953 -88431709 + AT_rich Low_complexity Low_complexity 1 27 0 354 278 78 9 chr4 95857469 95857584 -88431078 + MIR3 SINE MIR 77 199 -9 1753 181 45 17 chr4 95858189 95858761 -88429901 - L1M3 LINE L1 -568 5600 5015 50 18 0 0 chr4 95858782 95858839 -88429823 + AT_rich Low_complexity Low_complexity 1 57 0 1911 159 56 41 chr4 95858938 95859452 -88429210 - L1MA9 LINE L1 0 6323 5842 1078 149 37 47 chr4 95859468 95859485 -88429177 + L1MB1 LINE L1 5619 5635 -533 2074 180 14 6 chr4 95859485 95859847 -88428815 + MLT1A1 LTR MaLR 1 365 0 1078 149 37 47 chr4 95859847 95860044 -88428618 + L1MB1 LINE L1 5635 5831 -337 866 170 15 68 chr4 95860046 95860252 -88428410 + L1MB1 LINE L1 5973 6167 -1 2286 88 0 13 chr4 95860389 95860694 -88427968 + AluY SINE Alu 1 301 -10 1204 124 0 0 chr4 95860694 95860863 -88427799 + AluSg/x SINE Alu 134 302 -10 200 436 21 0 chr4 95860968 95861108 -88427554 - MIR3 SINE MIR -65 143 1 * 356 243 29 66 chr4 95861108 95861226 -88427436 + MIR SINE MIR 61 173 -89 587 245 0 43 chr4 95861336 95861499 -88427163 + L1MA10 LINE L1 6121 6276 -58 1205 117 15 46 chr4 95861519 95861716 -88426946 + MER2 DNA MER2_type 20 210 -135 600 188 312 0 chr4 95862361 95862531 -88426131 + MER58A DNA MER1_type 1 223 -1 180 0 0 0 chr4 95863260 95863280 -88425382 + (TTA)n Simple_repeat Simple_repeat 2 21 0 769 219 37 6 chr4 95863283 95863447 -88425215 - AluJo SINE Alu -29 283 115 27 0 0 0 chr4 95863639 95863666 -88424996 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr4 95863783 95863812 -88424850 + AT_rich Low_complexity Low_complexity 1 29 0 2772 137 33 6 chr4 95863915 95864397 -88424265 - L1MB3 LINE L1 -7 6176 5682 180 0 0 0 chr4 95864413 95864433 -88424229 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2377 86 0 0 chr4 95864794 95865084 -88423578 - AluSp SINE Alu -23 290 1 290 288 0 0 chr4 95866008 95866074 -88422588 - L2 LINE L2 -6 3307 3242 210 253 161 35 chr4 95866590 95866677 -88421985 + MIR SINE MIR 94 191 -71 340 343 241 6 chr4 95867031 95867346 -88421316 - L3 LINE CR1 -222 1355 967 1759 88 94 67 chr4 95867533 95867830 -88420832 - AluSx SINE Alu -7 305 1 332 254 25 59 chr4 95868311 95868429 -88420233 + MIR3 SINE MIR 81 194 -14 22 56 0 0 chr4 95868868 95868904 -88419758 + AT_rich Low_complexity Low_complexity 1 36 0 402 285 46 7 chr4 95869202 95869353 -88419309 - L1MC4a LINE L1 -1892 5916 5760 759 315 17 17 chr4 95869364 95869656 -88419006 - L1MC4a LINE L1 -2102 5706 5415 282 180 377 8 chr4 95870024 95870146 -88418516 - LTR67 LTR ERVL -4 553 387 2129 148 5 58 chr4 95870978 95871390 -88417272 - MLT1B LTR MaLR 0 390 1 691 211 37 2 chr4 95872170 95872337 -88416325 - MER8 DNA MER2_type 0 239 28 208 0 62 0 chr4 95873062 95873094 -88415568 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 1119 326 59 14 chr4 95873326 95873472 -88415190 - MLT1K LTR MaLR -128 460 322 2209 101 0 0 chr4 95873472 95873760 -88414902 + AluSg SINE Alu 6 293 -17 1119 326 59 14 chr4 95873760 95874052 -88414610 - MLT1K LTR MaLR -266 322 2 346 281 138 19 chr4 95874479 95874639 -88414023 + MER5A DNA MER1_type 7 185 -4 194 350 150 0 chr4 95874899 95874979 -88413683 - MIR3 SINE MIR -21 187 96 43011 32 21 1 chr4 95875024 95881053 -88407609 - L1PA2 LINE L1 0 6155 4 526 209 61 0 chr4 95881244 95881357 -88407305 - MIR SINE MIR -55 207 88 539 263 154 6 chr4 95881357 95881513 -88407149 - MER5A DNA MER1_type 0 189 11 24 0 0 0 chr4 95881970 95881994 -88406668 + AT_rich Low_complexity Low_complexity 1 24 0 2817 113 141 0 chr4 95882853 95883313 -88405349 - MER1A DNA MER1_type -2 525 1 525 217 0 9 chr4 95883423 95883529 -88405133 + FLAM_C SINE Alu 19 123 -20 186 118 0 0 chr4 95884302 95884336 -88404326 + (CA)n Simple_repeat Simple_repeat 2 35 0 1920 175 0 3 chr4 95884538 95884835 -88403827 - AluJo SINE Alu -16 296 1 2914 243 68 39 chr4 95886184 95887447 -88401215 - HAL1 LINE L1 0 2507 1208 181 354 53 26 chr4 95887776 95887889 -88400773 - L2 LINE L2 -1 3312 3197 214 322 152 39 chr4 95888106 95888488 -88400174 - L2 LINE L2 -806 2508 2084 193 318 23 91 chr4 95888579 95888711 -88399951 - MIR SINE MIR -56 206 84 2081 119 3 17 chr4 95888717 95889010 -88399652 + AluSc SINE Alu 1 289 -20 688 276 15 20 chr4 95889112 95889308 -88399354 - MIR SINE MIR -19 243 49 367 253 71 32 chr4 95889434 95889588 -88399074 - MIR SINE MIR -3 259 100 279 125 0 0 chr4 95889588 95889636 -88399026 + L1MA4 LINE L1 6218 6265 -35 244 143 0 0 chr4 95889647 95889689 -88398973 + L1MA4A LINE L1 6250 6291 -12 254 204 11 57 chr4 95889739 95889827 -88398835 + CT-rich Low_complexity Low_complexity 4 87 0 21 0 0 0 chr4 95890200 95890221 -88398441 + AT_rich Low_complexity Low_complexity 1 21 0 2251 119 3 0 chr4 95890303 95890606 -88398056 - AluSq SINE Alu -9 304 1 2014 147 10 3 chr4 95891078 95891370 -88397292 - AluJo SINE Alu -13 299 6 468 276 213 14 chr4 95892424 95892772 -88395890 - Charlie7 DNA MER1_type -2161 451 35 238 291 30 67 chr4 95892863 95892997 -88395665 + L2 LINE L2 2738 2866 -448 25 31 0 0 chr4 95893262 95893294 -88395368 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr4 95893344 95893374 -88395288 + AT_rich Low_complexity Low_complexity 1 30 0 199 119 17 85 chr4 95893553 95893612 -88395050 + (TA)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr4 95893724 95893745 -88394917 + AT_rich Low_complexity Low_complexity 1 21 0 1283 238 46 0 chr4 95893790 95894071 -88394591 - AluJo SINE Alu -18 294 1 2640 260 64 19 chr4 95894160 95895189 -88393473 - L1MC4 LINE L1 -178 7864 6790 618 259 70 92 chr4 95895220 95895253 -88393409 - L1MC4 LINE L1 -1196 6846 6814 2234 125 0 0 chr4 95895253 95895557 -88393105 - AluSx SINE Alu -8 304 1 618 259 70 92 chr4 95895557 95895756 -88392906 - L1MC4 LINE L1 -1228 6814 6612 276 30 0 0 chr4 95895756 95895789 -88392873 + (TG)n Simple_repeat Simple_repeat 2 34 0 618 259 70 92 chr4 95895789 95895845 -88392817 - L1MC4 LINE L1 -1430 6612 6556 1978 143 10 3 chr4 95895845 95896153 -88392509 - AluJo SINE Alu -2 310 1 618 259 70 92 chr4 95896153 95896233 -88392429 - L1MC4 LINE L1 -1486 6556 6484 347 211 11 0 chr4 95896235 95896325 -88392337 + CT-rich Low_complexity Low_complexity 1 91 0 568 276 0 0 chr4 95896326 95896442 -88392220 - FLAM_A SINE Alu -17 116 1 600 267 62 0 chr4 95896442 95896603 -88392059 + L2 LINE L2 2616 2786 -528 1359 218 32 35 chr4 95896655 95897003 -88391659 - MLT1A1 LTR MaLR 0 365 19 1071 261 52 24 chr4 95897095 95897425 -88391237 + L2 LINE L2 2467 2805 -509 973 212 139 56 chr4 95897425 95897784 -88390878 - MLT1F LTR MaLR 0 542 154 377 339 10 57 chr4 95897788 95897980 -88390682 + L2 LINE L2 3112 3294 -19 290 68 0 0 chr4 95899655 95899699 -88388963 - MADE1 DNA Mariner -36 44 1 1417 133 8 33 chr4 95899884 95900125 -88388537 - MER46A DNA MER2_type 0 236 2 354 181 319 9 chr4 95900474 95900590 -88388072 - MER5B DNA MER1_type -10 168 17 356 273 0 30 chr4 95900814 95900913 -88387749 + MER5A DNA MER1_type 14 109 -80 818 215 40 5 chr4 95900944 95901144 -88387518 - MER3 DNA MER1_type -1 208 2 1300 108 38 16 chr4 95901374 95901559 -88387103 - AluSx SINE Alu -16 296 108 3352 77 18 5 chr4 95901561 95902004 -88386658 - MLT2A2 LTR ERVL -4 449 1 40991 75 13 13 chr4 95902004 95907658 -88381004 - HERVL-A2 LTR ERVL 0 5654 1 2904 91 61 0 chr4 95907658 95907704 -88380958 - MLT2A2 LTR ERVL 0 453 411 303 28 0 0 chr4 95907704 95907740 -88380922 + (TG)n Simple_repeat Simple_repeat 1 36 0 2904 91 61 0 chr4 95907740 95908120 -88380542 - MLT2A2 LTR ERVL -42 411 1 713 171 9 0 chr4 95908120 95908231 -88380431 - AluSx SINE Alu -201 112 1 2212 114 55 17 chr4 95909600 95909961 -88378701 - THE1C LTR MaLR 0 375 1 10259 116 37 4 chr4 95909961 95911491 -88377171 - THE1C-int LTR MaLR 0 1580 1 2331 133 11 16 chr4 95911491 95911868 -88376794 - THE1C LTR MaLR 0 375 1 550 265 51 89 chr4 95912733 95912806 -88375856 - MIR SINE MIR -1 261 187 1998 143 0 0 chr4 95912806 95913092 -88375570 - AluSq SINE Alu -27 286 1 550 265 51 89 chr4 95913092 95913275 -88375387 - MIR SINE MIR -75 187 15 22 35 0 0 chr4 95914696 95914725 -88373937 + AT_rich Low_complexity Low_complexity 1 29 0 2225 218 75 34 chr4 95914735 95915445 -88373217 - L1ME3 LINE L1 -25 6137 5399 396 300 77 24 chr4 95916845 95917015 -88371647 + MIR SINE MIR 58 236 -26 1063 273 106 15 chr4 95917159 95917566 -88371096 + MER69 DNA AcHobo 133 576 -650 910 211 68 72 chr4 95917557 95918016 -88370646 + MER69 DNA AcHobo 2011 2467 -59 * 39548 36 34 2 chr4 95918021 95923975 -88364687 - L1PA3 LINE L1 0 6155 1 407 298 192 0 chr4 95925228 95925379 -88363283 + MER5A DNA MER1_type 10 189 0 2135 146 17 3 chr4 95925522 95925872 -88362790 - THE1A LTR MaLR 0 355 1 11481 100 10 0 chr4 95925875 95927437 -88361225 - THE1A-int LTR MaLR -3 1577 1 2297 114 17 8 chr4 95927437 95927789 -88360873 - THE1A LTR MaLR 0 355 1 526 286 53 12 chr4 95927789 95927960 -88360702 + MIR SINE MIR 84 261 -1 2063 138 17 0 chr4 95928154 95928450 -88360212 - AluSx SINE Alu -11 301 1 792 211 7 0 chr4 95928471 95928623 -88360039 - FRAM SINE Alu -23 153 1 337 325 34 0 chr4 95979720 95979837 -88308825 - L2 LINE L2 0 3313 3193 286 356 34 34 chr4 95980060 95980237 -88308425 + MER5B DNA MER1_type 2 178 0 545 291 6 22 chr4 95980891 95981070 -88307592 - MER5B DNA MER1_type 0 178 3 21 0 0 0 chr4 95981430 95981451 -88307211 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr4 95981618 95981654 -88307008 + AT_rich Low_complexity Low_complexity 1 36 0 1087 164 125 69 chr4 95981853 95982101 -88306561 + MSTD LTR MaLR 73 306 -90 2092 92 8 0 chr4 95982101 95982362 -88306300 + AluSx SINE Alu 29 291 -21 225 83 0 0 chr4 95982370 95982406 -88306256 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1087 164 125 69 chr4 95982406 95982453 -88306209 + MSTD LTR MaLR 312 394 -2 6105 218 70 53 chr4 95982453 95982667 -88305995 + MSTD-int LTR MaLR 2 211 -1524 2337 121 0 0 chr4 95982667 95982972 -88305690 - AluSx SINE Alu -5 307 3 6105 218 70 53 chr4 95982972 95984458 -88304204 + MSTD-int LTR MaLR 211 1730 -5 1411 197 130 20 chr4 95984462 95984817 -88303845 + MSTD LTR MaLR 1 394 -2 252 200 0 18 chr4 95987004 95987059 -88301603 - MLT1K LTR MaLR -348 240 187 1918 131 0 0 chr4 95987157 95987417 -88301245 - AluSq SINE Alu -53 260 1 23 0 0 0 chr4 95988979 95989002 -88299660 + AT_rich Low_complexity Low_complexity 1 23 0 337 209 12 23 chr4 95990769 95990855 -88297807 - Charlie1a DNA MER1_type 0 1455 1371 * 1765 142 27 30 chr4 95990851 95991049 -88297613 - MER44D DNA MER2_type -1884 607 410 2342 137 28 14 chr4 95991049 95991408 -88297254 + THE1B LTR MaLR 1 364 0 1765 142 27 30 chr4 95991408 95991547 -88297115 - MER44D DNA MER2_type -2081 410 1 * 3884 188 84 70 chr4 95991547 95992183 -88296479 - Charlie1a DNA MER1_type -1404 1357 732 16324 92 2 0 chr4 95992183 95995265 -88293397 - L1PA7 LINE L1 -12 6142 3067 3884 188 84 70 chr4 95995265 95995966 -88292696 - Charlie1a DNA MER1_type -2029 732 1 28 29 0 0 chr4 95996336 95996371 -88292291 + AT_rich Low_complexity Low_complexity 1 35 0 401 154 0 13 chr4 95996566 95996644 -88292018 + CT-rich Low_complexity Low_complexity 4 80 0 1497 173 4 33 chr4 95996684 95996955 -88291707 + AluJo SINE Alu 9 271 -41 310 276 292 10 chr4 95997220 95997412 -88291250 + MIR SINE MIR 17 262 0 331 313 35 17 chr4 95999117 95999232 -88289430 + MIR SINE MIR 40 156 -106 * 570 272 125 12 chr4 95999224 95999440 -88289222 - MIR SINE MIR -1 261 18 741 217 60 0 chr4 95999487 95999653 -88289009 - MIR SINE MIR -86 176 1 339 289 0 0 chr4 95999653 95999739 -88288923 + MIR SINE MIR 163 248 -14 897 212 78 93 chr4 96000243 96000742 -88287920 - LTR8A LTR ERV1 0 727 106 243 284 0 49 chr4 96000742 96000844 -88287818 - LTR8A LTR ERV1 -444 283 187 267 250 70 30 chr4 96000898 96000998 -88287664 - LTR8 LTR ERV1 -587 104 1 322 317 49 12 chr4 96001160 96001324 -88287338 + MIR SINE MIR 73 242 -20 22 56 0 0 chr4 96001346 96001382 -88287280 + AT_rich Low_complexity Low_complexity 1 36 0 275 341 126 11 chr4 96001774 96001956 -88286706 - L3 LINE CR1 -12 1565 1363 293 307 100 33 chr4 96004176 96004326 -88284336 - L3 LINE CR1 -186 1391 1232 189 420 40 0 chr4 96004355 96004529 -88284133 - L3 LINE CR1 -1194 383 203 2302 96 14 39 chr4 96004766 96005130 -88283532 - THE1A LTR MaLR 0 355 1 675 220 145 7 chr4 96005191 96005388 -88283274 - MIR SINE MIR -32 230 13 248 314 149 29 chr4 96005808 96005983 -88282679 + MIR SINE MIR 49 244 -18 195 283 0 0 chr4 96005949 96005995 -88282667 + L2 LINE L2 3256 3301 -12 * 184 267 190 35 chr4 96006879 96006995 -88281667 - MER5A DNA MER1_type -24 165 32 23 54 0 0 chr4 96007041 96007078 -88281584 + AT_rich Low_complexity Low_complexity 1 37 0 186 43 0 0 chr4 96007524 96007547 -88281115 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 656 317 23 19 chr4 96008835 96008918 -88279744 + HERV16 LTR ERVL 1695 1776 -3220 14286 132 21 37 chr4 96008918 96010020 -88278642 - Tigger1 DNA MER2_type 0 2418 1300 2192 124 16 0 chr4 96010020 96010327 -88278335 - AluSx SINE Alu 0 312 1 14286 132 21 37 chr4 96010327 96010763 -88277899 - Tigger1 DNA MER2_type -1118 1300 859 2070 109 3 0 chr4 96010763 96011073 -88277589 - AluSq SINE Alu 0 311 1 14286 132 21 37 chr4 96011073 96011988 -88276674 - Tigger1 DNA MER2_type -1559 859 2 656 317 23 19 chr4 96011988 96012163 -88276499 + HERV16 LTR ERVL 1776 1954 -3042 860 200 17 51 chr4 96012170 96012405 -88276257 + MLT2D LTR ERVL 15 241 -173 2359 158 15 8 chr4 96012405 96012805 -88275857 + MER57A LTR ERV1 1 403 0 456 19 0 0 chr4 96012811 96012864 -88275798 + (CA)n Simple_repeat Simple_repeat 2 54 0 308 248 139 23 chr4 96012904 96013033 -88275629 + HERV16 LTR ERVL 1944 2087 -2909 685 258 60 93 chr4 96013180 96013633 -88275029 + LTR16A LTR ERVL 7 444 -6 195 42 0 0 chr4 96013865 96013889 -88274773 + (TTA)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr4 96013992 96014016 -88274646 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 96014311 96014332 -88274330 + AT_rich Low_complexity Low_complexity 1 21 0 279 79 0 0 chr4 96014491 96014529 -88274133 + (TA)n Simple_repeat Simple_repeat 1 38 0 362 294 55 11 chr4 96014621 96014968 -88273694 - L1M4 LINE L1 -2800 3346 2985 347 172 0 0 chr4 96014992 96015050 -88273612 + LTR47A LTR ERVL 9 66 -386 342 183 197 0 chr4 96015050 96015121 -88273541 + LTR47A LTR ERVL 366 450 -2 231 154 0 0 chr4 96015179 96015218 -88273444 + LTR47B LTR ERVL 66 104 -339 1032 207 24 5 chr4 96015274 96015487 -88273175 + LTR47A LTR ERVL 236 452 0 372 256 133 50 chr4 96015487 96015983 -88272679 - L1M4 LINE L1 -3156 2990 2454 408 261 51 42 chr4 96015986 96016304 -88272358 - MLT1I LTR MaLR -1 408 1 452 311 3 0 chr4 96016461 96016805 -88271857 + (TA)n Simple_repeat Simple_repeat 1 345 0 308 291 47 0 chr4 96016806 96016892 -88271770 - L1MC4 LINE L1 -1339 6703 6614 265 231 0 22 chr4 96016900 96016991 -88271671 + L1MC4 LINE L1 6615 6703 -1339 1610 188 124 31 chr4 96017048 96017468 -88271194 + LTR40b LTR ERVL 4 462 0 1725 189 0 3 chr4 96018076 96018372 -88270290 - AluJo SINE Alu -16 296 2 619 122 0 56 chr4 96018851 96018903 -88269759 - HY3 scRNA scRNA 0 101 56 2007 147 0 16 chr4 96018903 96019210 -88269452 + AluJb SINE Alu 1 302 -10 619 122 0 56 chr4 96019210 96019264 -88269398 - HY3 scRNA scRNA -45 56 1 292 189 15 22 chr4 96019283 96019377 -88269285 - L1ME LINE L1 -350 5820 5727 802 290 47 44 chr4 96019437 96019754 -88268908 + Charlie2 DNA MER1_type 1 318 -2544 2308 133 24 10 chr4 96019792 96020175 -88268487 + MLT1B LTR MaLR 3 390 0 1286 186 77 138 chr4 96020182 96020521 -88268141 + Charlie2 DNA MER1_type 1887 2245 -617 1477 180 0 0 chr4 96020521 96020760 -88267902 + AluJo SINE Alu 36 274 -38 1286 186 77 138 chr4 96020760 96021383 -88267279 + Charlie2 DNA MER1_type 2245 2790 -72 1730 181 0 33 chr4 96021391 96021694 -88266968 + AluJb SINE Alu 1 293 -19 429 257 64 42 chr4 96021804 96022146 -88266516 - L1ME LINE L1 -656 5508 5160 354 304 96 2 chr4 96022153 96022354 -88266308 - L1ME LINE L1 -1037 5109 4880 4319 166 33 33 chr4 96022365 96023223 -88265439 - MER21B LTR ERV1 -1 862 5 2764 184 63 24 chr4 96023318 96023953 -88264709 - MER21B-int LTR ERV1 -56 4135 3476 318 251 88 76 chr4 96026524 96026695 -88261967 + L1ME4a LINE L1 5943 6115 -6 200 323 55 10 chr4 96027227 96027324 -88261338 - MIR SINE MIR -56 152 48 717 203 120 48 chr4 96027428 96027719 -88260943 + L1ME2 LINE L1 5798 6109 -55 302 311 232 42 chr4 96028362 96028716 -88259946 + L1M2 LINE L1 591 1011 -5838 183 133 0 0 chr4 96031509 96031539 -88257123 + MIR SINE MIR 163 192 -70 450 218 145 0 chr4 96032999 96033123 -88255539 + MIR SINE MIR 6 147 -115 1332 143 35 116 chr4 96033160 96033504 -88255158 - Charlie3 DNA MER1_type 0 2712 24 4205 118 228 86 chr4 96033512 96035183 -88253479 - pTR5 LTR ERV1 -9 2429 375 1386 111 21 90 chr4 96035215 96035504 -88253158 + L1MA5A LINE L1 6026 6294 -3 325 200 15 0 chr4 96035527 96035592 -88253070 + MIR SINE MIR 136 201 -61 277 405 65 22 chr4 96035749 96035934 -88252728 - L2 LINE L2 0 3272 3080 402 269 159 7 chr4 96035992 96036137 -88252525 + MER5A DNA MER1_type 4 170 -19 242 200 0 20 chr4 96036222 96036272 -88252390 - L2 LINE L2 -12 3301 3253 311 282 254 29 chr4 96037019 96037228 -88251434 + MIR SINE MIR 3 258 -4 259 318 12 12 chr4 96037355 96037440 -88251222 + MIR SINE MIR 16 100 -108 21 36 0 0 chr4 96038397 96038425 -88250237 + AT_rich Low_complexity Low_complexity 1 28 0 442 327 13 20 chr4 96038520 96038673 -88249989 - L1MC/D LINE L1 -2163 5645 5494 1128 190 57 7 chr4 96039293 96039596 -88249066 + MER33 DNA MER1_type 1 303 -21 2155 131 0 6 chr4 96039612 96039924 -88248738 + AluSx SINE Alu 1 310 -2 1875 251 54 18 chr4 96040064 96040619 -88248043 - L1ME1 LINE L1 -5 6161 5587 870 199 6 0 chr4 96040619 96040775 -88247887 + AluJb SINE Alu 130 286 -26 5050 224 46 63 chr4 96040784 96042172 -88246490 - L1ME1 LINE L1 -743 5403 4257 2489 44 0 0 chr4 96042172 96042469 -88246193 + AluY SINE Alu 1 297 -14 5050 224 46 63 chr4 96042469 96043152 -88245510 - L1ME1 LINE L1 -1889 4257 3564 298 316 180 8 chr4 96043162 96043412 -88245250 + L2 LINE L2 3021 3313 0 2158 174 26 0 chr4 96044161 96044547 -88244115 + MER57A LTR ERV1 1 396 -7 304 342 75 0 chr4 96044649 96044769 -88243893 - L2 LINE L2 -1 3271 3143 560 249 83 58 chr4 96044996 96045201 -88243461 - MIR SINE MIR 0 262 53 386 161 123 0 chr4 96046072 96046108 -88242554 - MLT2B3 LTR ERVL 0 554 524 474 88 0 0 chr4 96046108 96046176 -88242486 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 386 161 123 0 chr4 96046176 96046220 -88242442 - MLT2B3 LTR ERVL -30 524 464 24 0 0 0 chr4 96046575 96046599 -88242063 + AT_rich Low_complexity Low_complexity 1 24 0 1193 209 25 4 chr4 96047022 96047257 -88241405 + MER21B LTR ERV1 1 240 -623 866 154 19 25 chr4 96047276 96047438 -88241224 - MER21A LTR ERV1 -17 914 754 2594 173 42 62 chr4 96047456 96048023 -88240639 + MER21A LTR ERV1 359 914 -17 257 333 32 32 chr4 96048635 96048758 -88239904 - MIR3 SINE MIR -35 173 51 826 149 15 67 chr4 96048940 96049135 -88239527 - L1MA6 LINE L1 -3 6297 6113 221 264 94 57 chr4 96100132 96100238 -88188424 + L2 LINE L2 3199 3308 -5 271 204 19 0 chr4 96100460 96100514 -88188148 - L2 LINE L2 -2 3270 3216 315 0 0 0 chr4 96101074 96101109 -88187553 + (TG)n Simple_repeat Simple_repeat 1 35 0 287 247 52 0 chr4 96101602 96101699 -88186963 + (TA)n Simple_repeat Simple_repeat 2 103 0 2125 86 86 10 chr4 96102253 96102543 -88186119 + AluSx SINE Alu 1 312 0 183 80 0 0 chr4 96103265 96103290 -88185372 + (T)n Simple_repeat Simple_repeat 1 25 0 585 268 270 0 chr4 96103770 96104277 -88184385 - L1ME4a LINE L1 -6 6115 5472 1500 156 10 21 chr4 96105458 96105747 -88182915 + L1MB3 LINE L1 5891 6176 -7 252 233 0 0 chr4 96105898 96105941 -88182721 + MER57A LTR ERV1 295 337 -66 1783 126 4 0 chr4 96106096 96106365 -88182297 - L1PB3 LINE L1 0 6154 5885 338 253 54 108 chr4 96106548 96106564 -88182098 + L2 LINE L2 2204 2219 -1095 8353 111 30 3 chr4 96106564 96107831 -88180831 + HSMAR2 DNA Mariner 1 1301 -1 338 253 54 108 chr4 96107831 96107980 -88180682 + L2 LINE L2 2219 2360 -954 294 50 0 0 chr4 96108186 96108226 -88180436 + (CA)n Simple_repeat Simple_repeat 1 40 0 823 85 15 8 chr4 96108406 96108536 -88180126 + (TTTCC)n Simple_repeat Simple_repeat 1 131 0 3287 243 66 10 chr4 96108638 96109623 -88179039 + L1PBa LINE L1 6 1045 -5818 5511 160 29 2 chr4 96109627 96110716 -88177946 + L1PBa LINE L1 1093 2354 -4509 12888 25 5 0 chr4 96110719 96113011 -88175651 + L1PA4 LINE L1 3860 6155 0 2066 108 6 6 chr4 96113013 96113336 -88175326 + L1PB1 LINE L1 5469 5791 -360 31 26 0 0 chr4 96113336 96113374 -88175288 + AT_rich Low_complexity Low_complexity 1 38 0 2341 128 0 13 chr4 96113377 96113751 -88174911 + L1PB1 LINE L1 5783 6151 0 564 143 0 0 chr4 96115075 96115173 -88173489 - L1PA16 LINE L1 -1 6165 6068 753 210 131 17 chr4 96115466 96115756 -88172906 + MER33 DNA MER1_type 2 324 0 336 309 88 64 chr4 96116471 96116801 -88171861 - HAL1 LINE L1 0 2507 2170 28 0 0 0 chr4 96116820 96116848 -88171814 + AT_rich Low_complexity Low_complexity 1 28 0 182 349 15 0 chr4 96118154 96118220 -88170442 - MIR SINE MIR -29 233 167 197 33 33 0 chr4 96118556 96118586 -88170076 + (ATG)n Simple_repeat Simple_repeat 2 32 0 360 0 0 0 chr4 96119340 96119380 -88169282 + (CA)n Simple_repeat Simple_repeat 2 41 0 1286 150 44 137 chr4 96120214 96120279 -88168383 - MLT1B LTR MaLR -8 382 313 2209 100 3 0 chr4 96120279 96120570 -88168092 + AluSx SINE Alu 4 295 -17 1286 150 44 137 chr4 96120570 96120870 -88167792 - MLT1B LTR MaLR -77 313 51 4061 238 89 41 chr4 96120949 96123375 -88165287 - L1ME1 LINE L1 -4 6231 3690 300 332 26 60 chr4 96123398 96123850 -88164812 - L1ME1 LINE L1 -5507 889 453 311 343 104 47 chr4 96123920 96124238 -88164424 - L1ME1 LINE L1 -6027 369 34 279 208 19 0 chr4 96124238 96124291 -88164371 - MIR SINE MIR -113 149 96 * 395 319 50 85 chr4 96124284 96124544 -88164118 + MIR SINE MIR 7 257 -5 1673 122 0 0 chr4 96126041 96126279 -88162383 - AluSg/x SINE Alu 0 310 73 189 214 0 0 chr4 96126421 96126463 -88162199 + T-rich Low_complexity Low_complexity 2 43 0 270 0 0 0 chr4 96127891 96127921 -88160741 + (CAA)n Simple_repeat Simple_repeat 1 30 0 531 331 50 50 chr4 96128025 96128481 -88160181 + L2 LINE L2 2309 2764 -550 1101 102 82 15 chr4 96129278 96129474 -88159188 - L1PA15 LINE L1 -1 6164 5956 287 273 40 0 chr4 96129622 96129721 -88158941 - MER5C DNA MER1_type 0 324 222 221 333 65 111 chr4 96129807 96130068 -88158594 + L2 LINE L2 2935 3183 -89 1199 213 81 51 chr4 96130704 96131038 -88157624 - MER2 DNA MER2_type 0 344 1 14769 223 30 46 chr4 96132579 96138463 -88150199 - L1PA15 LINE L1 0 7603 1520 207 0 0 0 chr4 96138726 96138749 -88149913 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 24 32 0 0 chr4 96142788 96142819 -88145843 + AT_rich Low_complexity Low_complexity 1 31 0 261 0 0 0 chr4 96143859 96143888 -88144774 + (T)n Simple_repeat Simple_repeat 1 29 0 1906 107 38 14 chr4 96144418 96144707 -88143955 - AluSx SINE Alu -16 296 1 233 176 0 106 chr4 96145545 96145630 -88143032 + L1MC4 LINE L1 6628 6703 -1339 21 0 0 0 chr4 96146773 96146794 -88141868 + AT_rich Low_complexity Low_complexity 1 21 0 5133 104 28 4 chr4 96147774 96148560 -88140102 - L1MA2 LINE L1 -3 6301 5497 181 340 0 0 chr4 96149628 96149675 -88138987 - L2 LINE L2 -8 3264 3218 916 141 146 28 chr4 96150104 96150317 -88138345 + L1MC3 LINE L1 7548 7785 0 291 93 0 0 chr4 96151511 96151554 -88137108 + (TTCC)n Simple_repeat Simple_repeat 4 46 0 32 67 0 0 chr4 96152075 96152135 -88136527 + AT_rich Low_complexity Low_complexity 1 60 0 270 193 0 0 chr4 96152291 96152348 -88136314 + T-rich Low_complexity Low_complexity 1 57 0 23 0 0 0 chr4 96153531 96153554 -88135108 + AT_rich Low_complexity Low_complexity 1 23 0 324 0 0 0 chr4 96154660 96154696 -88133966 + (CA)n Simple_repeat Simple_repeat 1 36 0 876 209 39 10 chr4 96154947 96155153 -88133509 + MIR SINE MIR 5 216 -46 27 29 0 0 chr4 96155162 96155196 -88133466 + AT_rich Low_complexity Low_complexity 1 34 0 837 320 81 21 chr4 96155682 96156104 -88132558 + LTR16B LTR ERVL 1 447 -17 337 91 0 0 chr4 96156536 96156580 -88132082 + Alu SINE Alu 1 44 -258 1525 271 179 46 chr4 96156638 96156785 -88131877 + L2 LINE L2 1963 2089 -1224 1493 188 3 55 chr4 96156785 96157094 -88131568 - AluJo SINE Alu -16 296 4 1525 271 179 46 chr4 96157094 96158146 -88130516 + L2 LINE L2 2089 3312 -1 213 347 81 40 chr4 96158264 96158388 -88130274 - L2 LINE L2 -2 3270 3142 252 279 138 36 chr4 96159269 96159461 -88129201 - MIR SINE MIR -38 224 10 682 255 165 0 chr4 96159637 96159837 -88128825 - MIR SINE MIR -28 234 2 1397 238 103 46 chr4 96160795 96161272 -88127390 + MLT2B1 LTR ERVL 1 534 -20 275 133 0 17 chr4 96161278 96161338 -88127324 + (TC)n Simple_repeat Simple_repeat 1 59 0 287 132 75 0 chr4 96161338 96161391 -88127271 + MLT2D LTR ERVL 358 414 0 30 27 0 0 chr4 96162328 96162365 -88126297 + AT_rich Low_complexity Low_complexity 1 37 0 7543 231 44 66 chr4 96162365 96163039 -88125623 - L1MA9 LINE L1 -38 7295 6608 2133 130 13 0 chr4 96163039 96163346 -88125316 - AluSx SINE Alu -1 311 1 7543 231 44 66 chr4 96163346 96163427 -88125235 - L1MA9 LINE L1 -725 6608 6527 14009 136 23 16 chr4 96163427 96166565 -88122097 + L1PA11 LINE L1 3030 6173 -1 7543 231 44 66 chr4 96166565 96167655 -88121007 - L1MA9 LINE L1 -806 6527 5415 322 188 58 14 chr4 96167655 96167724 -88120938 + Tigger5 DNA MER2_type 2252 2323 0 7543 231 44 66 chr4 96167724 96167773 -88120889 - L1MA9 LINE L1 -1918 5415 5366 514 189 11 0 chr4 96167773 96167863 -88120799 + Tigger5 DNA MER2_type 2231 2321 -2 7543 231 44 66 chr4 96167863 96168867 -88119795 - L1MA9 LINE L1 -1967 5366 4342 236 54 54 0 chr4 96168867 96168904 -88119758 + T-rich Low_complexity Low_complexity 2 40 0 7543 231 44 66 chr4 96168904 96169755 -88118907 - L1MA9 LINE L1 -2991 4342 3474 3061 168 8 2 chr4 96169755 96170124 -88118538 - L1PB3 LINE L1 -1 6153 5779 185 62 0 31 chr4 96170124 96170156 -88118506 + (TA)n Simple_repeat Simple_repeat 2 32 0 3061 168 8 2 chr4 96170156 96170316 -88118346 - L1PB3 LINE L1 -375 5779 5621 7543 231 44 66 chr4 96170316 96170340 -88118322 - L1MA9 LINE L1 -3859 3474 3451 2053 103 0 11 chr4 96170340 96170613 -88118049 + AluY SINE Alu 25 294 -17 7543 231 44 66 chr4 96170613 96172354 -88116308 - L1MA9 LINE L1 -3882 3451 2148 2115 153 0 0 chr4 96172354 96172662 -88116000 - AluSx SINE Alu -4 308 1 7543 231 44 66 chr4 96172662 96174761 -88113901 - L1MA9 LINE L1 -5185 2148 5 24 32 0 0 chr4 96176019 96176050 -88112612 + AT_rich Low_complexity Low_complexity 1 31 0 1764 129 0 0 chr4 96176100 96176372 -88112290 - L1PA14 LINE L1 -3 6158 5887 848 223 61 0 chr4 96177282 96177479 -88111183 - MER58A DNA MER1_type -15 209 1 608 339 108 16 chr4 96177840 96178156 -88110506 + L2 LINE L2 2286 2630 -684 474 49 0 0 chr4 96178309 96178370 -88110292 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 333 323 109 20 chr4 96178370 96178618 -88110044 + L2 LINE L2 2989 3258 -55 1224 254 77 34 chr4 96180353 96180822 -88107840 - MER113 DNA MER1_type? -1 520 32 274 331 135 6 chr4 96181156 96181319 -88107343 + MIR SINE MIR 3 186 -76 608 305 57 16 chr4 96181329 96181575 -88107087 - MIR SINE MIR 0 262 7 24 0 0 0 chr4 96181787 96181811 -88106851 + AT_rich Low_complexity Low_complexity 1 24 0 7616 27 0 1 chr4 96182238 96183699 -88104963 + L1PA4 LINE L1 4688 6155 0 562 263 121 33 chr4 96184303 96185304 -88103358 - L1MEc LINE L1 -3887 2509 1266 1734 174 3 19 chr4 96185304 96185614 -88103048 - AluJb SINE Alu -7 305 1 562 263 121 33 chr4 96185614 96185776 -88102886 - L1MEc LINE L1 -5130 1266 1120 939 285 119 41 chr4 96185796 96186702 -88101960 - L1M4 LINE L1 -2953 3193 2217 234 0 0 0 chr4 96186706 96186732 -88101930 + (TG)n Simple_repeat Simple_repeat 1 26 0 2853 220 28 24 chr4 96186742 96187352 -88101310 - L1 LINE L1 -1909 4237 3622 2035 125 7 0 chr4 96187352 96187641 -88101021 + AluSg1 SINE Alu 1 291 -18 2853 220 28 24 chr4 96187641 96187772 -88100890 - L1 LINE L1 -2524 3622 3493 346 143 16 48 chr4 96187975 96188038 -88100624 + Tigger4(Zombi) DNA MER2_type 2671 2731 0 30 69 0 0 chr4 96188058 96188116 -88100546 + AT_rich Low_complexity Low_complexity 1 58 0 392 0 0 20 chr4 96188684 96188733 -88099929 + (TC)n Simple_repeat Simple_repeat 2 49 0 5859 154 6 15 chr4 96188807 96189874 -88098788 - L1MA8 LINE L1 -27 6264 5210 2527 110 6 3 chr4 96189874 96190237 -88098425 - THE1B LTR MaLR 0 364 1 5859 154 6 15 chr4 96190237 96190431 -88098231 - L1MA8 LINE L1 -1081 5210 5016 843 325 79 11 chr4 96190431 96190977 -88097685 + L2 LINE L2 2699 3278 -35 1183 222 31 28 chr4 96192985 96193305 -88095357 - L1MB7 LINE L1 -13 6171 5851 4412 231 57 20 chr4 96193306 96194654 -88094008 - L1MB7 LINE L1 -1382 4764 3367 338 313 67 33 chr4 96195250 96195400 -88093262 - MIR SINE MIR -62 200 46 2544 36 0 13 chr4 96196895 96197201 -88091461 + AluY SINE Alu 1 302 -9 3245 178 24 63 chr4 96198159 96198979 -88089683 + L1 LINE L1 4406 5193 -953 1386 177 112 3 chr4 96198972 96199277 -88089385 - L1P LINE L1 -1214 4932 4595 * 4550 120 26 15 chr4 96199274 96200184 -88088478 + L1PA13 LINE L1 5051 5967 -196 * 6059 239 24 35 chr4 96200181 96202152 -88086510 + L1MB7 LINE L1 2891 4838 -1308 592 135 0 0 chr4 96202152 96202248 -88086414 + HSMAR1 DNA Mariner 1 96 -1191 228 111 48 0 chr4 96202286 96202349 -88086313 + (TA)n Simple_repeat Simple_repeat 1 66 0 2068 106 3 40 chr4 96202349 96202650 -88086012 - AluSx SINE Alu -19 293 4 4198 110 52 44 chr4 96202653 96203364 -88085298 + HSMAR1 DNA Mariner 87 803 -484 4590 178 36 7 chr4 96203370 96204328 -88084334 + L1MB7 LINE L1 5171 6159 -25 23 54 0 0 chr4 96204584 96204621 -88084041 + AT_rich Low_complexity Low_complexity 1 37 0 394 43 0 0 chr4 96204627 96204673 -88083989 + (CA)n Simple_repeat Simple_repeat 1 46 0 2266 58 26 23 chr4 96205001 96205311 -88083351 - AluY SINE Alu 0 311 1 629 158 8 0 chr4 96205497 96205617 -88083045 + CT-rich Low_complexity Low_complexity 1 121 0 680 258 0 12 chr4 96205619 96205786 -88082876 - FRAM SINE Alu -1 165 1 23 33 0 0 chr4 96205869 96205899 -88082763 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 96207152 96207174 -88081488 + AT_rich Low_complexity Low_complexity 1 22 0 287 234 69 28 chr4 96207715 96207860 -88080802 + L1MC5 LINE L1 7627 7777 -184 192 125 0 0 chr4 96208196 96208228 -88080434 + (TG)n Simple_repeat Simple_repeat 2 33 0 21 0 0 0 chr4 96209650 96209671 -88078991 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr4 96209832 96209871 -88078791 + AT_rich Low_complexity Low_complexity 1 39 0 297 167 0 0 chr4 96209879 96209933 -88078729 + (TA)n Simple_repeat Simple_repeat 1 54 0 21 71 0 0 chr4 96210278 96210320 -88078342 + AT_rich Low_complexity Low_complexity 1 42 0 628 78 17 26 chr4 96211181 96211297 -88077365 + (TTCC)n Simple_repeat Simple_repeat 2 116 0 519 223 58 73 chr4 96211473 96211733 -88076929 - MER112 DNA MER1_type 0 256 1 521 356 62 4 chr4 96212457 96212682 -88075980 - MIR SINE MIR -16 246 9 572 207 0 17 chr4 96213762 96213878 -88074784 - FLAM_A SINE Alu -17 125 12 22 56 0 0 chr4 96214630 96214666 -88073996 + AT_rich Low_complexity Low_complexity 1 36 0 216 210 16 0 chr4 96214929 96214991 -88073671 + A-rich Low_complexity Low_complexity 5 67 0 1868 174 11 50 chr4 96216844 96217223 -88071439 + THE1B LTR MaLR 1 364 0 386 258 114 8 chr4 96217406 96217538 -88071124 + MIR3 SINE MIR 63 208 0 379 306 60 49 chr4 96218326 96218509 -88070153 - MIR SINE MIR -57 205 21 587 129 0 0 chr4 96218678 96218771 -88069891 - L1M2 LINE L1 -668 5623 5531 1602 175 40 0 chr4 96218772 96219046 -88069616 + Tigger3b DNA MER2_type 2 286 -945 722 266 13 6 chr4 96219082 96219240 -88069422 - MER8 DNA MER2_type -80 159 1 5019 139 75 6 chr4 96219243 96220125 -88068537 + Tigger3b DNA MER2_type 289 1231 0 1391 182 24 3 chr4 96220129 96220580 -88068082 - L1M2 LINE L1 -744 5402 5068 355 230 0 0 chr4 96220578 96220652 -88068010 - L1M2 LINE L1 -1327 4819 4746 * 3975 248 35 58 chr4 96220701 96222058 -88066604 + L1M3b LINE L1 603 1908 -4443 494 299 108 10 chr4 96222159 96222353 -88066309 + MIR SINE MIR 4 216 -46 222 304 33 11 chr4 96224876 96224968 -88063694 + L3 LINE CR1 334 427 -1150 243 250 78 0 chr4 96225117 96225181 -88063481 + L2 LINE L2 3238 3306 -7 349 288 172 19 chr4 96225916 96226183 -88062479 + MER113 DNA MER1_type? 189 496 -25 21 0 0 0 chr4 96226581 96226602 -88062060 + AT_rich Low_complexity Low_complexity 1 21 0 2313 76 3 3 chr4 96226710 96227014 -88061648 - AluY SINE Alu -7 304 1 1647 72 176 0 chr4 96227830 96228080 -88060582 - AluSx SINE Alu -8 294 1 283 175 32 32 chr4 96228129 96228192 -88060470 - L2 LINE L2 -1 3271 3209 234 260 67 29 chr4 96229704 96229808 -88058854 - L1ME3A LINE L1 -28 6142 6035 295 274 20 20 chr4 96230082 96230184 -88058478 - L1ME3A LINE L1 -366 5796 5695 1052 275 52 57 chr4 96230236 96230916 -88057746 - L1ME3A LINE L1 -823 5323 4648 362 272 101 4 chr4 96230972 96231200 -88057462 - L1ME3A LINE L1 -1643 4503 4254 1787 238 63 62 chr4 96231257 96231855 -88056807 - LTR9 LTR ERV1 -13 599 1 1160 285 95 43 chr4 96231866 96232906 -88055756 - L1ME3A LINE L1 -1930 4216 3123 1079 189 58 5 chr4 96232916 96233122 -88055540 - AluJb SINE Alu -11 301 85 23 54 0 0 chr4 96233147 96233184 -88055478 + AT_rich Low_complexity Low_complexity 1 37 0 7939 58 12 3 chr4 96233691 96234689 -88053973 + LTR13 LTR ERVK 1 1007 0 23 33 0 0 chr4 96235980 96236010 -88052652 + AT_rich Low_complexity Low_complexity 1 30 0 28 29 0 0 chr4 96236707 96236742 -88051920 + AT_rich Low_complexity Low_complexity 1 35 0 436 254 58 53 chr4 96237445 96237634 -88051028 - MIR3 SINE MIR -11 197 8 199 350 103 8 chr4 96239336 96239453 -88049209 - MIR SINE MIR -60 148 21 740 233 38 119 chr4 96239886 96240122 -88048540 - MIR SINE MIR -14 248 32 2317 106 0 3 chr4 96241861 96242163 -88046499 + AluSq SINE Alu 1 301 -12 249 256 218 32 chr4 96243167 96243323 -88045339 - L2 LINE L2 0 3313 3129 205 327 80 0 chr4 96243492 96243605 -88045057 + L2 LINE L2 2286 2407 -907 264 30 0 0 chr4 96245175 96245208 -88043454 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 231 293 0 0 chr4 96248155 96248213 -88040449 + tRNA-Ile-ATT tRNA tRNA 17 74 -3 280 323 0 0 chr4 96249175 96249274 -88039388 + (TA)n Simple_repeat Simple_repeat 1 99 0 318 322 95 23 chr4 96249440 96249744 -88038918 + L1ME LINE L1 5000 5325 -821 242 254 28 99 chr4 96249908 96250050 -88038612 + L1ME LINE L1 5553 5684 -437 452 243 0 7 chr4 96250150 96250294 -88038368 + (TA)n Simple_repeat Simple_repeat 2 144 0 340 248 19 112 chr4 96251017 96251178 -88037484 + MIR SINE MIR 47 192 -70 309 324 108 22 chr4 96251934 96252119 -88036543 - L3 LINE CR1 -1 1576 1376 395 267 64 38 chr4 96253382 96253644 -88035018 + MLT1J2 LTR MaLR 91 403 -47 207 0 0 0 chr4 96253651 96253674 -88034988 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 972 101 0 7 chr4 96253674 96253805 -88034857 - L1PA10 LINE L1 -18 6150 6019 2074 129 0 20 chr4 96253805 96254147 -88034515 + L1P LINE L1 4706 5040 -1106 225 200 0 20 chr4 96254147 96254197 -88034465 + MLT1I LTR MaLR 354 402 -7 2000 125 3 7 chr4 96254231 96254518 -88034144 - AluSq SINE Alu -25 288 3 285 335 46 36 chr4 96255388 96255556 -88033106 - MER5A DNA MER1_type -8 181 1 328 172 23 0 chr4 96255578 96255665 -88032997 + (TA)n Simple_repeat Simple_repeat 2 90 0 6214 64 0 0 chr4 96256714 96257507 -88031155 - L1PA6 LINE L1 0 6469 5677 16397 84 8 21 chr4 96257511 96259904 -88028758 - L1PA6 LINE L1 -2939 3522 1162 580 149 0 0 chr4 96259902 96259989 -88028673 - L1PA6 LINE L1 -6365 96 10 * 21 36 0 0 chr4 96260749 96260777 -88027885 + AT_rich Low_complexity Low_complexity 1 28 0 287 331 54 43 chr4 96260973 96261157 -88027505 + MER5A DNA MER1_type 2 187 -2 276 30 0 0 chr4 96261167 96261200 -88027462 + (TG)n Simple_repeat Simple_repeat 2 34 0 2305 261 140 47 chr4 96262169 96263275 -88025387 + MER69B DNA AcHobo 1 1209 -17 5379 211 15 32 chr4 96264174 96265328 -88023334 + L1MA1 LINE L1 15 1148 -6417 5976 156 19 11 chr4 96265330 96266539 -88022123 + L1MA1 LINE L1 5636 6859 -746 5096 101 11 4 chr4 96266540 96267295 -88021367 + L1MA1 LINE L1 6962 7721 0 346 347 107 48 chr4 96267403 96267882 -88020780 - L2 LINE L2 -2 3311 2805 664 295 76 0 chr4 96268383 96268620 -88020042 - MIR SINE MIR -1 261 7 1372 333 86 55 chr4 96268732 96269864 -88018798 - L2 LINE L2 0 3313 2111 1148 203 98 49 chr4 96269864 96270190 -88018472 + MER2 DNA MER2_type 1 342 -2 1372 333 86 55 chr4 96270190 96270569 -88018093 - L2 LINE L2 -1202 2111 1745 808 330 88 40 chr4 96270613 96270821 -88017841 - L2 LINE L2 -811 2503 2306 1451 154 3 111 chr4 96270821 96271153 -88017509 + AluJb SINE Alu 1 296 -6 808 330 88 40 chr4 96271153 96271661 -88017001 - L2 LINE L2 -1008 2306 1753 223 268 35 106 chr4 96272367 96272565 -88016097 - L2 LINE L2 -1586 1728 1545 551 342 25 4 chr4 96272575 96272818 -88015844 - MIR SINE MIR -14 248 1 1156 266 106 38 chr4 96272996 96273683 -88014979 + L2 LINE L2 2596 3313 0 207 343 101 10 chr4 96274508 96274607 -88014055 + MER5A DNA MER1_type 63 170 -19 24 0 0 0 chr4 96275147 96275171 -88013491 + AT_rich Low_complexity Low_complexity 1 24 0 389 205 48 0 chr4 96275437 96275520 -88013142 + MER5A DNA MER1_type 26 112 -77 2525 221 99 32 chr4 96275880 96276601 -88012061 - L1ME2 LINE L1 -11 6153 5482 270 0 0 0 chr4 96276601 96276631 -88012031 + (TG)n Simple_repeat Simple_repeat 1 30 0 2525 221 99 32 chr4 96276631 96276676 -88011986 - L1ME2 LINE L1 -682 5482 5441 1207 261 115 65 chr4 96276676 96276767 -88011895 + MLT1G1 LTR MaLR 1 86 -509 2027 117 3 60 chr4 96276767 96277084 -88011578 - AluSg SINE Alu -11 299 1 1207 261 115 65 chr4 96277084 96277559 -88011103 + MLT1G1 LTR MaLR 86 595 0 660 246 48 0 chr4 96277828 96277995 -88010667 - MER58B DNA MER1_type 0 341 167 2219 162 111 12 chr4 96278004 96278418 -88010244 + MSTB2 LTR MaLR 3 457 0 414 271 45 85 chr4 96278457 96278634 -88010028 + MLT1G1-int LTR MaLR 436 605 -766 1591 174 25 59 chr4 96278737 96279058 -88009604 - AluJo SINE Alu -2 310 1 272 308 90 13 chr4 96279366 96279522 -88009140 + MLT1G1-int LTR MaLR 1563 1730 -5 1201 284 96 29 chr4 96279528 96280049 -88008613 + MLT1G1 LTR MaLR 1 595 0 1663 277 85 8 chr4 96280049 96280515 -88008147 - L1ME2 LINE L1 -810 5336 4785 2325 74 7 3 chr4 96280515 96280813 -88007849 + AluSp SINE Alu 1 299 -14 1663 277 85 8 chr4 96280813 96281122 -88007540 - L1ME2 LINE L1 -1361 4785 4501 3110 280 110 20 chr4 96281131 96282844 -88005818 - L1ME2 LINE L1 -2045 4101 2234 1629 133 3 5 chr4 96283644 96283923 -88004739 - L1PA8A LINE L1 -299 5832 5551 1410 113 13 4 chr4 96283923 96284144 -88004518 + L1MA2 LINE L1 6074 6304 0 215 269 20 128 chr4 96284256 96284405 -88004257 + L2 LINE L2 2950 3082 -190 286 346 23 31 chr4 96284778 96284908 -88003754 + L2 LINE L2 3126 3254 -18 573 254 0 8 chr4 96286745 96286867 -88001795 - MIR SINE MIR -111 151 31 14010 198 43 9 chr4 96287241 96290771 -87997891 + L1PB1 LINE L1 6 3414 -3453 186 43 0 0 chr4 96290771 96290794 -87997868 + (CAA)n Simple_repeat Simple_repeat 2 24 0 14010 198 43 9 chr4 96290794 96293717 -87994945 + L1PB1 LINE L1 3414 6867 0 554 258 139 79 chr4 96293888 96294306 -87994356 + MLT1J2 LTR MaLR 1 443 -7 203 184 26 0 chr4 96296061 96296099 -87992563 - MIR SINE MIR -6 256 218 * 265 365 35 0 chr4 96296092 96296207 -87992455 - L2 LINE L2 0 3313 3195 281 338 15 38 chr4 96296258 96296391 -87992271 - MIR SINE MIR -58 150 21 677 292 111 47 chr4 96296820 96296870 -87991792 + L3 LINE CR1 519 564 -1013 1721 194 3 25 chr4 96296870 96297189 -87991473 + AluJb SINE Alu 1 312 0 677 292 111 47 chr4 96297189 96297564 -87991098 + L3 LINE CR1 564 977 -600 2193 80 0 35 chr4 96297564 96297878 -87990784 + AluY SINE Alu 1 303 -8 677 292 111 47 chr4 96297878 96297903 -87990759 + L3 LINE CR1 977 999 -578 347 286 0 0 chr4 96297996 96298087 -87990575 + L2 LINE L2 3223 3313 0 201 350 142 8 chr4 96298125 96298371 -87990291 + L3 LINE CR1 1210 1488 -89 424 322 41 0 chr4 96298877 96298998 -87989664 + L2 LINE L2 3141 3266 -6 250 337 29 81 chr4 96299332 96299382 -87989280 - L2 LINE L2 -40 3232 3181 2179 125 0 3 chr4 96299382 96299693 -87988969 + AluSg SINE Alu 1 310 0 250 337 29 81 chr4 96299693 96299814 -87988848 - L2 LINE L2 -91 3181 3070 337 304 80 0 chr4 96300066 96300191 -87988471 - MIR SINE MIR -111 151 17 537 301 92 21 chr4 96300888 96301127 -87987535 + MIR SINE MIR 7 262 0 719 236 0 36 chr4 96301725 96301890 -87986772 + FRAM SINE Alu 1 159 -7 422 273 108 17 chr4 96301957 96302188 -87986474 - MER97c DNA MER1_type? -1 1089 838 362 241 45 9 chr4 96302272 96302384 -87986278 - MER97b DNA MER1_type? -491 562 447 623 260 25 59 chr4 96302420 96302624 -87986038 - MER63A DNA MER1_type -11 199 3 430 273 52 32 chr4 96302630 96302784 -87985878 - MER97a DNA MER1_type? -454 440 284 248 265 0 0 chr4 96302814 96302882 -87985780 - MER97c DNA MER1_type? -938 152 85 1627 263 42 28 chr4 96302934 96303550 -87985112 - L1ME1 LINE L1 -54 6112 5488 441 277 50 19 chr4 96304348 96304507 -87984155 + MER97b DNA MER1_type? 888 1051 -2 776 203 6 40 chr4 96304565 96304742 -87983920 - FRAM SINE Alu -2 174 4 243 88 0 0 chr4 96304955 96304989 -87983673 + (CA)n Simple_repeat Simple_repeat 1 34 0 376 261 26 59 chr4 96305045 96305198 -87983464 + L2 LINE L2 3158 3305 -8 469 262 0 0 chr4 96305239 96305342 -87983320 + L2 LINE L2 3207 3309 -4 544 278 107 67 chr4 96306134 96306246 -87982416 - L2 LINE L2 -549 2765 2659 1481 190 32 64 chr4 96306246 96306620 -87982042 - MLT1A1 LTR MaLR 0 365 4 544 278 107 67 chr4 96306620 96306957 -87981705 - L2 LINE L2 -655 2659 2298 486 335 74 26 chr4 96306933 96307163 -87981499 - MIR SINE MIR -18 244 4 * 943 249 148 20 chr4 96307185 96307591 -87981071 - MER69 DNA AcHobo -5 2521 2064 282 362 16 0 chr4 96307622 96307749 -87980913 - MER69 DNA AcHobo -1096 130 2 1446 151 106 90 chr4 96309068 96309425 -87979237 + MLT1A1 LTR MaLR 1 363 -2 367 164 16 0 chr4 96309564 96309625 -87979037 + MLT-int LTR MaLR 680 741 -994 2465 203 15 15 chr4 96309706 96310178 -87978484 + MLT1A1-int LTR MaLR 1263 1734 -1 1861 194 20 3 chr4 96310186 96310536 -87978126 + MLT1A1 LTR MaLR 10 365 0 478 183 17 0 chr4 96311187 96311302 -87977360 + CT-rich Low_complexity Low_complexity 4 120 0 1184 229 60 0 chr4 96311306 96311572 -87977090 - AluJo SINE Alu -30 282 1 459 283 21 0 chr4 96311812 96311957 -87976705 - HAL1b LINE L1 -550 798 651 22 0 0 0 chr4 96312077 96312099 -87976563 + AT_rich Low_complexity Low_complexity 1 22 0 287 293 141 0 chr4 96313349 96313448 -87975214 + MIR SINE MIR 92 204 -58 195 162 27 0 chr4 96313435 96313472 -87975190 - L2 LINE L2 0 3313 3276 * 549 370 52 9 chr4 96313472 96313702 -87974960 - L2 LINE L2 -175 3138 2899 1126 223 28 53 chr4 96313930 96314249 -87974413 - MLT1A1 LTR MaLR 0 365 55 1330 219 121 32 chr4 96314261 96314608 -87974054 + MSTD LTR MaLR 19 396 0 262 182 0 36 chr4 96314608 96314663 -87973999 - MLT1A1 LTR MaLR -375 53 1 705 278 11 0 chr4 96315288 96315475 -87973187 + MER5A DNA MER1_type 1 189 0 217 352 39 16 chr4 96315569 96315697 -87972965 + MIR SINE MIR 110 240 -22 212 217 65 0 chr4 96315696 96315742 -87972920 - L2 LINE L2 -3 3269 3221 * 277 245 113 9 chr4 96315982 96316088 -87972574 - L2 LINE L2 -745 2569 2453 1091 290 113 36 chr4 96317822 96318535 -87970127 + L2 LINE L2 2441 3199 -114 228 35 0 0 chr4 96318696 96318725 -87969937 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 214 306 20 0 chr4 96321533 96321582 -87967080 - L2 LINE L2 -20 3293 3244 358 207 12 0 chr4 96321803 96321885 -87966777 - MER53 DNA DNA -106 83 1 587 316 93 30 chr4 96322710 96323042 -87965620 + MLT1L LTR MaLR 263 615 0 329 380 41 4 chr4 96323177 96323419 -87965243 - LTR16A LTR ERVL -177 273 23 195 254 0 0 chr4 96323438 96323501 -87965161 + (CATA)n Simple_repeat Simple_repeat 3 65 0 583 333 45 0 chr4 96324514 96324712 -87963950 + HERVL LTR ERVL 4134 4340 -1314 403 373 20 35 chr4 96324879 96325225 -87963437 + HERVL LTR ERVL 5011 5351 -413 278 107 5 21 chr4 96325714 96325774 -87962888 - Alu SINE Alu -260 42 1 512 266 53 36 chr4 96325779 96326136 -87962526 - L1M4 LINE L1 -825 5557 5195 298 227 25 25 chr4 96326142 96326260 -87962402 - L1MDa LINE L1 -4902 1480 1285 1820 147 58 0 chr4 96326350 96326740 -87961922 - L1MC/D LINE L1 -743 5403 5187 2702 148 45 0 chr4 96326741 96327206 -87961456 - L1MB3 LINE L1 -41 6142 5657 1627 181 47 49 chr4 96327954 96328319 -87960343 + MLT1A1 LTR MaLR 1 364 -1 212 273 0 73 chr4 96328336 96328391 -87960271 + L2 LINE L2 3126 3176 -96 2417 56 7 3 chr4 96329801 96330107 -87958555 + AluY SINE Alu 1 307 -4 29 28 0 0 chr4 96330277 96330313 -87958349 + AT_rich Low_complexity Low_complexity 1 36 0 314 343 53 6 chr4 96330611 96330780 -87957882 + MIR SINE MIR 86 262 0 35 41 0 0 chr4 96331433 96331482 -87957180 + AT_rich Low_complexity Low_complexity 1 49 0 2361 103 3 0 chr4 96331885 96332197 -87956465 - AluSp SINE Alu 0 313 1 260 347 47 74 chr4 96332491 96333119 -87955543 + L2 LINE L2 2707 3312 -1 7501 183 25 36 chr4 96333624 96334082 -87954580 + HERVL LTR ERVL 2619 3081 -2683 2486 219 26 0 chr4 96334082 96334589 -87954073 + MLT2B1 LTR ERVL 1 520 0 7501 183 25 36 chr4 96334589 96335529 -87953133 + HERVL LTR ERVL 3081 4001 -1763 1774 205 74 5 chr4 96335762 96336153 -87952509 + L1M3 LINE L1 1 418 -6612 10766 216 52 28 chr4 96336185 96336830 -87951832 + L1M3 LINE L1 3164 3792 -3351 2318 71 7 7 chr4 96336830 96337127 -87951535 - AluY SINE Alu -14 297 1 10766 216 52 28 chr4 96337127 96338901 -87949761 + L1M3 LINE L1 3792 5738 -1405 387 93 0 0 chr4 96338901 96338955 -87949707 - MADE1 DNA Mariner 0 80 27 10766 216 52 28 chr4 96338955 96339698 -87948964 + L1M3 LINE L1 5738 6461 -682 1345 202 12 4 chr4 96339859 96340111 -87948551 - ERVL-B1 LTR ERVL -3276 2488 2235 809 259 10 21 chr4 96340091 96340602 -87948060 - ERVL-B1 LTR ERVL -5177 587 1 * 183 204 0 0 chr4 96340677 96340731 -87947931 + (TA)n Simple_repeat Simple_repeat 1 54 0 1648 226 41 72 chr4 96340803 96341298 -87947364 - MLT2B1 LTR ERVL -35 464 1 26 50 0 0 chr4 96341666 96341706 -87946956 + AT_rich Low_complexity Low_complexity 1 40 0 2076 108 3 35 chr4 96342783 96343125 -87945537 - L1MA1 LINE L1 -65 7656 7326 * 6369 167 24 3 chr4 96343116 96344105 -87944557 - L1MA1 LINE L1 -605 7118 6075 180 0 0 0 chr4 96344105 96344125 -87944537 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 6369 167 24 3 chr4 96344125 96344743 -87943919 - L1MA1 LINE L1 -1648 6075 5472 215 100 0 25 chr4 96344744 96344784 -87943878 + (TTTTC)n Simple_repeat Simple_repeat 1 39 0 777 123 8 0 chr4 96344786 96344908 -87943754 - AluSg/x SINE Alu 0 309 187 17829 183 45 18 chr4 96344909 96347154 -87941508 - L1MA1 LINE L1 -2887 4678 2495 212 57 0 29 chr4 96347154 96347189 -87941473 + (TTTTG)n Simple_repeat Simple_repeat 5 38 0 17829 183 45 18 chr4 96347189 96349297 -87939365 - L1MA1 LINE L1 -5070 2495 210 2232 105 3 3 chr4 96349889 96350193 -87938469 - AluSx SINE Alu -8 304 1 2077 138 38 58 chr4 96351610 96352008 -87936654 - MLT1B LTR MaLR 0 390 1 2096 235 79 71 chr4 96352008 96353351 -87935311 - MLT1B-int LTR MaLR -1 1370 1 1759 158 45 65 chr4 96353351 96353749 -87934913 - MLT1B LTR MaLR 0 390 1 347 292 140 17 chr4 96353875 96354111 -87934551 + L1ME4a LINE L1 5850 6114 -7 27 0 0 0 chr4 96354111 96354138 -87934524 + AT_rich Low_complexity Low_complexity 1 27 0 378 192 0 39 chr4 96355544 96355674 -87932988 + (TA)n Simple_repeat Simple_repeat 1 125 0 24 32 0 0 chr4 96355689 96355720 -87932942 + AT_rich Low_complexity Low_complexity 1 31 0 403 148 0 49 chr4 96356067 96356148 -87932514 + MLT1B LTR MaLR 145 221 -169 951 274 55 63 chr4 96356561 96357050 -87931612 + MLT1D LTR MaLR 21 505 0 335 290 84 30 chr4 96357185 96357316 -87931346 + MIR SINE MIR 76 213 -49 3847 155 12 91 chr4 96357328 96358347 -87930315 - pTR5 LTR ERV1 0 2606 1524 2634 166 33 28 chr4 96358353 96358963 -87929699 - pTR5 LTR ERV1 -1085 1353 741 2385 184 40 19 chr4 96359649 96360360 -87928302 - L1M3 LINE L1 -682 5501 4775 3181 138 26 41 chr4 96360468 96361002 -87927660 - LTR9B LTR ERV1 -87 557 30 2428 91 0 0 chr4 96361002 96361310 -87927352 - AluY SINE Alu -3 308 1 3181 138 26 41 chr4 96361310 96361340 -87927322 - LTR9B LTR ERV1 -614 30 1 17213 106 50 32 chr4 96361341 96363992 -87924670 - HUERS-P3b LTR ERV1 -7 7411 4713 320 67 22 0 chr4 96363983 96364028 -87924634 - HUERS-P3b LTR ERV1 -3544 3874 3829 * 6630 71 1 1 chr4 96364028 96364882 -87923780 - L1PA7 LINE L1 -26 6128 5275 692 103 10 0 chr4 96364889 96364986 -87923676 + L1PA13 LINE L1 3763 3860 -2286 7836 171 6 77 chr4 96365205 96366758 -87921904 + L1PA13 LINE L1 3865 5526 -637 1894 125 24 28 chr4 96366758 96367046 -87921616 + AluSx SINE Alu 5 291 -21 7836 171 6 77 chr4 96367046 96367139 -87921523 + L1PA13 LINE L1 5526 5624 -539 2064 106 7 7 chr4 96367139 96367423 -87921239 + AluSx SINE Alu 5 288 -24 7836 171 6 77 chr4 96367423 96368121 -87920541 + L1PA13 LINE L1 5624 6162 -1 348 379 48 16 chr4 96368360 96368611 -87920051 + L2 LINE L2 2183 2441 -873 21 36 0 0 chr4 96368680 96368708 -87919954 + AT_rich Low_complexity Low_complexity 1 28 0 263 328 222 23 chr4 96369076 96369247 -87919415 - L2 LINE L2 -222 3091 2887 559 160 17 34 chr4 96370550 96370669 -87917993 + L1M4 LINE L1 5636 5752 -426 372 94 3 30 chr4 96370681 96370748 -87917914 - MLT2D LTR ERVL -358 56 5 638 223 54 6 chr4 96370751 96370917 -87917745 - ERVL-D LTR ERVL -6 5758 5585 2342 101 17 6 chr4 96370917 96371262 -87917400 + THE1C LTR MaLR 1 349 -26 328 333 21 0 chr4 96371884 96371980 -87916682 + L2 LINE L2 3205 3302 -11 228 248 26 0 chr4 96372374 96372491 -87916171 + CT-rich Low_complexity Low_complexity 58 177 0 300 111 0 0 chr4 96372518 96372563 -87916099 + (TC)n Simple_repeat Simple_repeat 2 46 0 195 146 0 0 chr4 96372562 96372603 -87916059 + (TA)n Simple_repeat Simple_repeat 1 41 0 * 307 293 52 9 chr4 96372614 96372730 -87915932 - L1MC4 LINE L1 -1336 6706 6586 927 141 11 11 chr4 96372730 96373084 -87915578 + (TA)n Simple_repeat Simple_repeat 2 355 0 1224 158 38 29 chr4 96373199 96373439 -87915223 - L1PA15 LINE L1 0 6165 5924 270 0 0 0 chr4 96373812 96373842 -87914820 + (T)n Simple_repeat Simple_repeat 1 30 0 483 312 40 28 chr4 96374366 96374619 -87914043 - L1MC4 LINE L1 -2013 5795 5540 198 277 0 21 chr4 96379507 96379554 -87909108 + MIR SINE MIR 31 76 -132 2412 70 0 7 chr4 96379662 96379960 -87908702 - AluSc SINE Alu -13 296 1 22 0 0 0 chr4 96381447 96381469 -87907193 + AT_rich Low_complexity Low_complexity 1 22 0 303 313 164 10 chr4 96381796 96381991 -87906671 + MIR SINE MIR 32 256 -6 294 318 127 8 chr4 96382129 96382255 -87906407 + MIR SINE MIR 110 250 -12 930 287 56 59 chr4 96383243 96383866 -87904796 - L2 LINE L2 -13 3300 2680 286 231 111 34 chr4 96384045 96384162 -87904500 - L2 LINE L2 -671 2643 2518 199 302 0 19 chr4 96385424 96385477 -87903185 - MIR SINE MIR -196 66 15 35 71 0 0 chr4 96385993 96386063 -87902599 + AT_rich Low_complexity Low_complexity 1 70 0 229 286 0 0 chr4 96386780 96386836 -87901826 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 478 333 12 30 chr4 96387434 96387602 -87901060 + L3 LINE CR1 1042 1206 -371 202 357 14 63 chr4 96387575 96387718 -87900944 + MIR SINE MIR 6 141 -121 * 27 0 0 0 chr4 96387802 96387829 -87900833 + AT_rich Low_complexity Low_complexity 1 27 0 543 345 64 29 chr4 96387875 96388188 -87900474 + L3 LINE CR1 1249 1572 -5 661 316 82 17 chr4 96388753 96389044 -87899618 + L3 LINE CR1 971 1280 -297 187 414 0 11 chr4 96389081 96389168 -87899494 + L3 LINE CR1 1385 1470 -107 214 260 0 0 chr4 96389299 96389349 -87899313 + L3 LINE CR1 1069 1118 -459 2304 254 79 14 chr4 96390062 96390857 -87897805 - L1ME3A LINE L1 -6 6164 5318 434 198 17 0 chr4 96390872 96390988 -87897674 - L1ME3A LINE L1 -923 5223 5106 361 177 0 21 chr4 96392975 96393071 -87895591 + (TA)n Simple_repeat Simple_repeat 1 94 0 407 333 160 9 chr4 96393592 96393910 -87894752 + L2 LINE L2 2610 2975 -339 19529 38 2 1 chr4 96394080 96396503 -87892159 - L1PA4 LINE L1 -983 5163 2740 7236 38 10 0 chr4 96396503 96397495 -87891167 + L1PA4 LINE L1 5155 6155 0 217 260 0 0 chr4 96398199 96398249 -87890413 + L2 LINE L2 3264 3313 0 492 274 109 39 chr4 96398911 96399141 -87889521 - MIR SINE MIR 0 262 17 391 185 0 25 chr4 96399416 96399497 -87889165 - MER116 DNA Mariner 0 80 2 295 242 6 157 chr4 96400392 96400570 -87888092 - MIR SINE MIR -32 230 80 1317 173 24 147 chr4 96401241 96401664 -87886998 - MLT1A2 LTR MaLR 0 374 4 22 56 0 0 chr4 96402620 96402656 -87886006 + AT_rich Low_complexity Low_complexity 1 36 0 846 133 25 107 chr4 96403143 96403295 -87885367 + LTR46 LTR ERV1 1 135 -325 2269 107 0 0 chr4 96403295 96403605 -87885057 - AluSg SINE Alu 0 310 1 846 133 25 107 chr4 96403605 96403648 -87885014 + LTR46 LTR ERV1 135 180 -280 * 1991 125 12 18 chr4 96403637 96403973 -87884689 + LTR46 LTR ERV1 127 460 0 210 105 0 0 chr4 96404263 96404301 -87884361 + (T)n Simple_repeat Simple_repeat 1 38 0 4906 4 0 0 chr4 96404326 96404874 -87883788 - L1PA2 LINE L1 -2 6153 5606 21 0 0 0 chr4 96404900 96404921 -87883741 + AT_rich Low_complexity Low_complexity 1 21 0 1584 222 14 24 chr4 96405351 96405720 -87882942 - MLT1A1 LTR MaLR 0 365 1 237 311 49 66 chr4 96405988 96406171 -87882491 + LTR67 LTR ERVL 347 526 -31 326 323 52 32 chr4 96406480 96406635 -87882027 - L2 LINE L2 0 3272 3115 840 264 21 0 chr4 96406639 96406832 -87881830 - MER82 DNA MER2_type -1 652 456 200 364 38 15 chr4 96407289 96407421 -87881241 - L2 LINE L2 -439 2875 2741 2205 68 4 0 chr4 96407673 96408001 -87880661 + AluY SINE Alu 1 329 0 216 169 24 60 chr4 96408046 96408129 -87880533 + (TTAA)n Simple_repeat Simple_repeat 3 82 0 39 50 0 0 chr4 96408178 96408238 -87880424 + AT_rich Low_complexity Low_complexity 1 60 0 21 71 0 0 chr4 96408456 96408498 -87880164 + AT_rich Low_complexity Low_complexity 1 42 0 398 260 130 35 chr4 96408527 96408727 -87879935 - L1ME1 LINE L1 -98 6068 5850 906 299 36 46 chr4 96408795 96409317 -87879345 - L1MEc LINE L1 -5522 874 358 3902 127 58 61 chr4 96409545 96410332 -87878330 + LTR1 LTR ERV1 1 785 0 251 295 39 16 chr4 96410332 96410461 -87878201 - L1MEc LINE L1 -6191 205 74 2261 252 34 18 chr4 96410509 96411246 -87877416 - L1M4c LINE L1 -4536 2423 1675 * 5833 168 31 11 chr4 96411245 96413274 -87875388 + L1PA16 LINE L1 4085 6157 -9 24 77 0 0 chr4 96413274 96413326 -87875336 + AT_rich Low_complexity Low_complexity 1 52 0 742 212 0 6 chr4 96413366 96413531 -87875131 - L1M4c LINE L1 -5200 1659 1496 367 188 0 0 chr4 96413528 96413597 -87875065 - L1M4 LINE L1 -1319 4891 4823 * 714 191 69 0 chr4 96413618 96413822 -87874840 - L1M4 LINE L1 -1637 4573 4356 293 109 0 0 chr4 96414145 96414191 -87874471 + L1PA12 LINE L1 5866 5911 -257 * 6937 218 50 5 chr4 96414188 96416007 -87872655 - L1M4 LINE L1 -1818 4392 2493 3049 255 37 13 chr4 96416002 96416872 -87871790 - L1M4 LINE L1 -5200 941 1 * 26 50 0 0 chr4 96416912 96416952 -87871710 + AT_rich Low_complexity Low_complexity 1 40 0 874 248 30 47 chr4 96417008 96417242 -87871420 + MIR SINE MIR 8 237 -25 21 57 0 0 chr4 96417247 96417282 -87871380 + AT_rich Low_complexity Low_complexity 1 35 0 199 347 13 0 chr4 96417376 96417451 -87871211 - MIR SINE MIR -135 127 52 581 215 7 37 chr4 96417512 96417532 -87871130 + AluJb SINE Alu 117 136 -176 1953 162 3 0 chr4 96417532 96417835 -87870827 + AluSx SINE Alu 1 304 -8 581 215 7 37 chr4 96417835 96417949 -87870713 + AluJb SINE Alu 136 247 -65 459 100 40 3 chr4 96418546 96418798 -87869864 + AluY SINE Alu 2 335 0 307 214 107 9 chr4 96419301 96419413 -87869249 - L1ME4a LINE L1 -74 6047 5925 291 309 19 8 chr4 96420397 96420535 -87868127 - L1ME4a LINE L1 -485 5679 5539 586 241 14 70 chr4 96420555 96420686 -87867976 - L1ME LINE L1 -303 5818 5710 2035 131 73 15 chr4 96420686 96421029 -87867633 + THE1B LTR MaLR 1 363 -1 586 241 14 70 chr4 96421029 96421183 -87867479 - L1ME LINE L1 -411 5710 5549 227 361 0 12 chr4 96421211 96421294 -87867368 - L2 LINE L2 -5 3308 3227 27 49 0 0 chr4 96423029 96423070 -87865592 + AT_rich Low_complexity Low_complexity 1 41 0 412 299 0 0 chr4 96423234 96423321 -87865341 - L2 LINE L2 0 3272 3186 1461 184 10 16 chr4 96424658 96424962 -87863700 + MER33 DNA MER1_type 1 302 -22 344 161 0 0 chr4 96425068 96425124 -87863538 - MLT2A2 LTR ERVL 0 453 398 2425 131 32 25 chr4 96425179 96425681 -87862981 - MLT2A2 LTR ERVL -40 514 1 429 300 88 44 chr4 96425714 96425964 -87862698 + MIR SINE MIR 2 262 0 308 321 66 0 chr4 96426036 96426142 -87862520 + L2 LINE L2 3201 3313 0 203 311 0 94 chr4 96426180 96426286 -87862376 - MIR SINE MIR -118 144 49 25 31 0 0 chr4 96426342 96426374 -87862288 + AT_rich Low_complexity Low_complexity 1 32 0 1968 216 49 5 chr4 96427492 96427917 -87860745 - MLT1C LTR MaLR -6 461 18 211 184 0 0 chr4 96428314 96428352 -87860310 + (CA)n Simple_repeat Simple_repeat 1 38 0 285 29 0 0 chr4 96429161 96429195 -87859467 + (CA)n Simple_repeat Simple_repeat 2 35 0 369 0 0 0 chr4 96429195 96429236 -87859426 + (GA)n Simple_repeat Simple_repeat 1 41 0 31 0 0 0 chr4 96431303 96431334 -87857328 + AT_rich Low_complexity Low_complexity 1 31 0 1988 179 3 3 chr4 96431795 96432130 -87856532 - MLT1A1 LTR MaLR 0 365 31 1449 152 19 46 chr4 96432132 96432330 -87856332 + AluJb SINE Alu 46 237 -75 4096 84 9 0 chr4 96432330 96432877 -87855785 - MER41A LTR ERV1 -2 552 1 1449 152 19 46 chr4 96432877 96432941 -87855721 + AluJb SINE Alu 237 301 -11 341 219 0 14 chr4 96433468 96433541 -87855121 + L2 LINE L2 3188 3259 -54 199 195 0 0 chr4 96434110 96434151 -87854511 + L2 LINE L2 3273 3313 0 475 225 83 0 chr4 96435497 96435617 -87853045 + FLAM_C SINE Alu 3 132 -1 217 300 0 0 chr4 96436403 96436453 -87852209 + L2 LINE L2 2694 2743 -571 27 0 0 0 chr4 96436850 96436877 -87851785 + AT_rich Low_complexity Low_complexity 1 27 0 210 336 146 18 chr4 96437318 96437428 -87851234 + L2 LINE L2 3149 3272 0 192 40 0 0 chr4 96437512 96437537 -87851125 + (CA)n Simple_repeat Simple_repeat 1 25 0 1522 126 30 15 chr4 96437911 96438180 -87850482 - L1PA16 LINE L1 -7 6159 5887 239 361 82 22 chr4 96438979 96439248 -87849414 - LTR16B LTR ERVL -160 304 20 1461 169 8 0 chr4 96439260 96439502 -87849160 - AluSg/x SINE Alu 0 312 69 770 304 56 11 chr4 96439581 96439936 -87848726 - L1MC/D LINE L1 -2061 5747 5377 543 259 111 14 chr4 96439959 96440248 -87848414 + L1MC4a LINE L1 5747 6063 -1745 389 275 55 10 chr4 96440277 96440477 -87848185 - L1MC/D LINE L1 -2346 5462 5254 508 311 90 74 chr4 96440481 96441276 -87847386 - L1MC/D LINE L1 -893 5253 4435 1728 132 21 0 chr4 96441276 96441563 -87847099 - L1MA4 LINE L1 -5 6295 6003 508 311 90 74 chr4 96441563 96441734 -87846928 - L1MC/D LINE L1 -1711 4435 4268 803 289 84 52 chr4 96441770 96442619 -87846043 - L1MC/D LINE L1 -1938 4208 3333 21 71 0 0 chr4 96442713 96442755 -87845907 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr4 96443019 96443049 -87845613 + AT_rich Low_complexity Low_complexity 1 30 0 2888 201 28 10 chr4 96443208 96443826 -87844836 - Tigger6 DNA MER2_type 0 1597 969 4383 174 33 12 chr4 96444390 96445419 -87843243 - L1MA9 LINE L1 0 6312 5126 1200 221 7 30 chr4 96445419 96445737 -87842925 + L1 LINE L1 3889 4195 -1951 201 222 0 0 chr4 96445737 96445773 -87842889 + polypurine Low_complexity Low_complexity 1 36 0 717 167 0 32 chr4 96445773 96445959 -87842703 + GA-rich Low_complexity Low_complexity 1 180 0 478 292 50 9 chr4 96446094 96446313 -87842349 - Tigger6 DNA MER2_type -1299 298 71 2156 96 3 43 chr4 96446391 96446715 -87841947 - AluY SINE Alu 0 311 1 571 252 0 0 chr4 96446839 96446954 -87841708 - FAM SINE Alu -70 115 1 3406 15 0 0 chr4 96447228 96447821 -87840841 - L1PA2 LINE L1 -576 5579 4987 5182 7 0 0 chr4 96447821 96448403 -87840259 + L1PA2 LINE L1 5571 6152 -3 2222 104 64 0 chr4 96448989 96449334 -87839328 - L1PB1 LINE L1 -1 6150 5784 438 176 11 0 chr4 96449334 96449412 -87839250 + L1MB1 LINE L1 6077 6168 0 342 307 100 0 chr4 96451636 96451776 -87836886 + MIR SINE MIR 87 240 -22 695 316 32 9 chr4 96451912 96452130 -87836532 + MIR SINE MIR 30 252 -10 3308 258 98 79 chr4 96452357 96452945 -87835717 + L1ME LINE L1 98 674 -5406 2390 84 0 0 chr4 96452945 96453255 -87835407 + AluY SINE Alu 1 310 -1 3308 258 98 79 chr4 96453255 96455213 -87833449 + L1ME LINE L1 674 2594 -3486 1822 195 53 82 chr4 96455213 96455740 -87832922 + MLT2B2 LTR ERVL 4 515 0 3308 258 98 79 chr4 96455740 96456518 -87832144 + L1ME LINE L1 2594 3356 -2724 2014 128 7 13 chr4 96456518 96456822 -87831840 + AluSx SINE Alu 1 302 -10 3308 258 98 79 chr4 96456822 96457616 -87831046 + L1ME LINE L1 3356 4511 -1569 1594 196 66 43 chr4 96457616 96458131 -87830531 - Charlie1 DNA MER1_type 0 2761 2235 2831 188 30 6 chr4 96458593 96459129 -87829533 + MER44D DNA MER2_type 1 604 -1 27 29 0 0 chr4 96459448 96459482 -87829180 + AT_rich Low_complexity Low_complexity 1 34 0 203 229 33 0 chr4 96460379 96460440 -87828222 + (TATATG)n Simple_repeat Simple_repeat 4 66 0 495 231 70 13 chr4 96461603 96461759 -87826903 - MER3 DNA MER1_type 0 209 45 2029 219 37 15 chr4 96462611 96463068 -87825594 + MLT1C LTR MaLR 1 467 0 433 294 68 85 chr4 96463385 96463984 -87824678 + HAL1b LINE L1 14 602 -746 1708 38 0 0 chr4 96464075 96464285 -87824377 + L1PA4 LINE L1 5941 6150 -5 197 33 33 0 chr4 96464679 96464709 -87823953 + (TC)n Simple_repeat Simple_repeat 1 31 0 342 0 0 0 chr4 96464710 96464748 -87823914 + (CA)n Simple_repeat Simple_repeat 1 38 0 183 42 0 0 chr4 96466008 96466032 -87822630 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 198 0 0 0 chr4 96467711 96467733 -87820929 + (A)n Simple_repeat Simple_repeat 1 22 0 971 255 14 0 chr4 96468150 96468366 -87820296 + MER20 DNA MER1_type 1 219 0 332 304 51 14 chr4 96468538 96468557 -87820105 + L2 LINE L2 3171 3188 -125 194 0 39 0 chr4 96468557 96468583 -87820079 + (CCCCCA)n Simple_repeat Simple_repeat 3 29 0 332 304 51 14 chr4 96468583 96468701 -87819961 + L2 LINE L2 3188 3313 0 1026 239 4 32 chr4 96468990 96469237 -87819425 + MIR SINE MIR 15 254 -8 21 0 0 0 chr4 96469737 96469758 -87818904 + AT_rich Low_complexity Low_complexity 1 21 0 715 226 124 0 chr4 96470174 96470360 -87818302 + MER3 DNA MER1_type 1 209 0 249 167 0 0 chr4 96470455 96470509 -87818153 + CT-rich Low_complexity Low_complexity 1 54 0 300 137 0 0 chr4 96470516 96470567 -87818095 + (CA)n Simple_repeat Simple_repeat 1 51 0 240 349 34 0 chr4 96472907 96473053 -87815609 - MER103 DNA DNA -13 153 3 956 261 41 32 chr4 96473140 96473485 -87815177 + MLT1I LTR MaLR 39 386 -23 956 236 5 0 chr4 96474576 96474779 -87813883 - MER3 DNA MER1_type 0 209 6 1664 111 0 0 chr4 96474845 96475061 -87813601 + AluSg/x SINE Alu 73 288 -22 11044 184 16 5 chr4 96475141 96476929 -87811733 + L1PA15-16 LINE L1 633 2561 -4288 551 0 0 0 chr4 96476929 96477021 -87811641 + L1PA3 LINE L1 6082 6173 0 11044 184 16 5 chr4 96477021 96477311 -87811351 + L1PA15-16 LINE L1 2561 2846 -4003 6553 118 71 44 chr4 96477312 96479195 -87809467 + MER4-int LTR ERV1 1439 4858 -1740 1669 162 55 4 chr4 96479195 96479497 -87809165 - AluSx SINE Alu 0 316 1 6553 118 71 44 chr4 96479497 96479674 -87808988 + MER4-int LTR ERV1 4858 5029 -1569 3436 164 62 21 chr4 96479675 96481017 -87807645 + L1MCa LINE L1 1054 2545 -3881 10752 146 30 4 chr4 96481017 96482793 -87805869 + Tigger1 DNA MER2_type 2 1823 -595 7113 142 16 8 chr4 96482806 96483026 -87805636 + L1MA1 LINE L1 3979 4196 -2106 1759 77 0 0 chr4 96483026 96483246 -87805416 - AluY SINE Alu -9 302 83 7113 142 16 8 chr4 96483246 96485329 -87803333 + L1MA1 LINE L1 4196 6301 -1 667 253 48 0 chr4 96485317 96485546 -87803116 + L1MCa LINE L1 3833 4072 -2354 * 2018 178 39 30 chr4 96485546 96486088 -87802574 - MLT2A2 LTR ERVL 0 554 1 5323 237 28 6 chr4 96486099 96487546 -87801116 + L1MCa LINE L1 4078 5557 -869 15784 157 49 6 chr4 96487568 96490900 -87797762 + L1PB1 LINE L1 2 3476 -3386 22 35 0 0 chr4 96492491 96492520 -87796142 + AT_rich Low_complexity Low_complexity 1 29 0 10992 185 15 16 chr4 96492775 96496162 -87792500 + L1PB1 LINE L1 3462 6846 -21 1625 114 6 111 chr4 96496195 96496511 -87792151 + L1MC1 LINE L1 6050 6332 -1 471 330 73 21 chr4 96496689 96497265 -87791397 + L1 LINE L1 4200 4552 -2310 315 334 55 26 chr4 96497365 96497787 -87790875 + L1M4 LINE L1 3685 4118 -2028 328 105 18 70 chr4 96497810 96497867 -87790795 + tRNA-Gly-GGG tRNA tRNA 4 57 -17 397 331 20 25 chr4 96497871 96498116 -87790546 + L1M4 LINE L1 4150 4393 -1753 226 256 12 12 chr4 96498118 96498204 -87790458 + (TA)n Simple_repeat Simple_repeat 2 87 0 390 42 0 0 chr4 96498478 96498526 -87790136 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 3966 180 67 21 chr4 96498526 96499313 -87789349 + L1 LINE L1 4163 4999 -1147 1673 191 3 13 chr4 96499313 96499617 -87789045 + AluJo SINE Alu 3 303 -9 3966 180 67 21 chr4 96499617 96499744 -87788918 + L1 LINE L1 4999 5119 -1027 12565 216 26 16 chr4 96499752 96503390 -87785272 - L1PA15-16 LINE L1 -1437 5412 1809 2004 139 7 0 chr4 96503390 96503684 -87784978 - AluSx SINE Alu -16 296 1 12565 216 26 16 chr4 96503684 96504379 -87784283 - L1PA15-16 LINE L1 -5040 1809 1021 1279 153 150 34 chr4 96504379 96504705 -87783957 - THE1B LTR MaLR 0 364 1 12565 216 26 16 chr4 96504705 96504986 -87783676 - L1PA15-16 LINE L1 -5828 1021 744 5852 235 23 53 chr4 96504989 96506384 -87782278 - L1PA15-16 LINE L1 -5586 1263 1 2169 155 80 2 chr4 96506544 96506957 -87781705 + MER65A LTR ERV1 1 445 0 506 301 54 21 chr4 96507220 96507459 -87781203 + L1ME LINE L1 5551 5797 -373 576 270 71 105 chr4 96508852 96508961 -87779701 - MLT1J2 LTR MaLR 0 450 339 4056 21 4 0 chr4 96508961 96509435 -87779227 - L1PA4 LINE L1 -3 6152 5677 576 270 71 105 chr4 96509435 96509791 -87778871 - MLT1J2 LTR MaLR -111 339 1 437 243 183 12 chr4 96510083 96510252 -87778410 + MIR SINE MIR 29 226 -36 513 71 0 0 chr4 96510262 96510332 -87778330 + (CAT)n Simple_repeat Simple_repeat 2 71 0 198 0 0 0 chr4 96510764 96510786 -87777876 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 260 111 22 0 chr4 96511412 96511457 -87777205 + MADE1 DNA Mariner 1 46 -34 532 309 25 33 chr4 96511498 96511579 -87777083 + L1MC/D LINE L1 5527 5607 -2201 2244 101 0 3 chr4 96511579 96511877 -87776785 + AluSg SINE Alu 1 297 -13 532 309 25 33 chr4 96511877 96512070 -87776592 + L1MC/D LINE L1 5607 5799 -2009 568 201 6 79 chr4 96512093 96512257 -87776405 - L2 LINE L2 0 3313 3162 21 57 0 0 chr4 96512714 96512749 -87775913 + AT_rich Low_complexity Low_complexity 1 35 0 289 333 130 6 chr4 96513546 96513708 -87774954 - MIR3 SINE MIR -5 203 22 702 264 41 51 chr4 96514109 96514401 -87774261 - LTR16A1 LTR ERVL -9 448 160 250 306 9 9 chr4 96514738 96514849 -87773813 + (TA)n Simple_repeat Simple_repeat 1 111 0 32 57 0 0 chr4 96515426 96515479 -87773183 + AT_rich Low_complexity Low_complexity 1 53 0 517 292 65 11 chr4 96515862 96516047 -87772615 + MER91A DNA MER1_type 2 196 0 423 68 0 0 chr4 96516229 96516288 -87772374 + (CA)n Simple_repeat Simple_repeat 2 60 0 223 167 0 0 chr4 96517041 96517083 -87771579 + (CA)n Simple_repeat Simple_repeat 1 42 0 1656 149 87 12 chr4 96518933 96519255 -87769407 - MER7A DNA MER2_type 0 346 3 649 324 102 30 chr4 96519424 96519795 -87768867 + LTR33 LTR ERVL 122 519 -2 595 305 30 25 chr4 96519799 96519996 -87768666 - MIR3 SINE MIR -10 198 1 216 378 17 41 chr4 96520395 96520567 -87768095 + MIR3 SINE MIR 38 205 -3 21 57 0 0 chr4 96520610 96520645 -87768017 + AT_rich Low_complexity Low_complexity 1 35 0 385 272 133 33 chr4 96521012 96521192 -87767470 + MIR SINE MIR 23 220 -42 305 279 58 19 chr4 96521178 96521282 -87767380 + L2 LINE L2 3202 3309 -4 * 872 331 48 15 chr4 96521639 96522032 -87766630 - MLT1I LTR MaLR 0 409 4 261 83 0 0 chr4 96522130 96522166 -87766496 + (T)n Simple_repeat Simple_repeat 1 36 0 217 222 16 79 chr4 96522171 96522297 -87766365 + GA-rich Low_complexity Low_complexity 5 122 0 184 333 58 0 chr4 96522497 96522566 -87766096 - MIR SINE MIR -90 172 100 273 196 0 0 chr4 96524078 96524134 -87764528 + (TA)n Simple_repeat Simple_repeat 1 56 0 496 255 168 12 chr4 96524156 96524317 -87764345 + MER5A DNA MER1_type 1 186 -3 394 262 285 0 chr4 96524601 96524773 -87763889 - MIR SINE MIR -5 257 37 319 65 22 0 chr4 96524895 96524941 -87763721 - MADE1 DNA Mariner -28 52 6 2300 109 0 10 chr4 96525451 96525762 -87762900 - AluSx SINE Alu -4 308 1 22 0 0 0 chr4 96526693 96526715 -87761947 + AT_rich Low_complexity Low_complexity 1 22 0 390 294 27 39 chr4 96527110 96527349 -87761313 + L2 LINE L2 2792 3029 -284 540 277 7 19 chr4 96527791 96527946 -87760716 + MIR SINE MIR 110 262 0 454 278 0 0 chr4 96528325 96528440 -87760222 + MLT1I LTR MaLR 293 407 -2 364 209 16 93 chr4 96528661 96528843 -87759819 - MER20B DNA MER1_type -74 709 542 988 69 0 0 chr4 96528917 96529047 -87759615 + L1PA5 LINE L1 6022 6151 -3 894 251 53 50 chr4 96529343 96529724 -87758938 + L1ME1 LINE L1 5785 6104 -62 1409 189 44 31 chr4 96529731 96529773 -87758889 - MLT2D LTR ERVL 0 414 374 306 0 0 0 chr4 96529773 96529807 -87758855 + (TG)n Simple_repeat Simple_repeat 2 35 0 1409 189 44 31 chr4 96529807 96530112 -87758550 - MLT2D LTR ERVL -40 374 65 274 167 21 0 chr4 96530488 96530536 -87758126 - Tigger6 DNA MER2_type -1028 55 7 894 250 18 5 chr4 96530602 96530826 -87757836 - MER20B DNA MER1_type -284 499 273 238 257 46 46 chr4 96530824 96530933 -87757729 - MER20B DNA MER1_type -658 125 17 * 4338 144 32 31 chr4 96532834 96533618 -87755044 - LTR1 LTR ERV1 0 785 1 450 276 54 44 chr4 96534601 96534804 -87753858 - MIR SINE MIR -24 238 34 412 313 40 0 chr4 96536702 96536852 -87751810 - MER115 DNA AcHobo -96 597 442 24 0 0 0 chr4 96537287 96537311 -87751351 + AT_rich Low_complexity Low_complexity 1 24 0 2282 107 3 0 chr4 96537314 96537622 -87751040 - AluSc SINE Alu 0 309 1 255 301 177 30 chr4 96539056 96539259 -87749403 - MIR SINE MIR -10 252 20 180 125 0 0 chr4 96540165 96540197 -87748465 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 256 320 197 16 chr4 96540359 96540481 -87748181 - L2 LINE L2 0 3272 3129 369 306 109 58 chr4 96540623 96540917 -87747745 - L2 LINE L2 -663 2651 2343 461 274 25 64 chr4 96541140 96541297 -87747365 + LTR67 LTR ERVL 76 226 -331 359 339 98 0 chr4 96541330 96541504 -87747158 + LTR67 LTR ERVL 352 542 -15 21 0 0 0 chr4 96541545 96541566 -87747096 + AT_rich Low_complexity Low_complexity 1 21 0 225 231 144 40 chr4 96543103 96543203 -87745459 - MIR SINE MIR -69 139 44 821 261 9 27 chr4 96543766 96543988 -87744674 + MER58A DNA MER1_type 2 219 -5 1230 193 27 151 chr4 96544723 96544801 -87743861 - Charlie4a DNA MER1_type -1454 507 421 2136 122 7 0 chr4 96544801 96545095 -87743567 - AluSx SINE Alu -16 296 1 1230 193 27 151 chr4 96545095 96545533 -87743129 - Charlie4a DNA MER1_type -1540 421 55 370 338 57 62 chr4 96546150 96546360 -87742302 + MIR SINE MIR 50 258 -4 336 299 110 16 chr4 96548764 96548891 -87739771 + MIR SINE MIR 3 141 -121 225 0 0 0 chr4 96548907 96548932 -87739730 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 282 337 0 20 chr4 96548934 96549035 -87739627 - L2 LINE L2 -15 3298 3200 218 283 115 18 chr4 96548998 96549111 -87739551 + MIR SINE MIR 137 260 -2 * 303 296 10 10 chr4 96549189 96549287 -87739375 + MIR SINE MIR 153 250 -12 2159 130 0 9 chr4 96549520 96549835 -87738827 + AluSx SINE Alu 1 312 0 2670 85 3 0 chr4 96601254 96601608 -87687054 + THE1A LTR MaLR 1 355 0 356 275 46 0 chr4 96601669 96601778 -87686884 - MIR SINE MIR -12 250 137 226 269 15 0 chr4 96603194 96603261 -87685401 + (CA)n Simple_repeat Simple_repeat 1 68 0 258 106 0 0 chr4 96603956 96604003 -87684659 + (A)n Simple_repeat Simple_repeat 1 47 0 464 313 171 5 chr4 96604342 96604553 -87684109 + MIR SINE MIR 7 252 -10 477 266 14 14 chr4 96604596 96604739 -87683923 + HAL1 LINE L1 1469 1611 -896 1141 219 62 119 chr4 96604749 96605225 -87683437 - MER90 LTR ERV1 -4 610 109 210 37 0 0 chr4 96605225 96605252 -87683410 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1935 127 7 0 chr4 96605254 96605529 -87683133 - AluSx SINE Alu -29 283 7 1141 219 62 119 chr4 96605529 96605579 -87683083 - MER90 LTR ERV1 -452 162 111 428 320 13 0 chr4 96605631 96605784 -87682878 + HAL1 LINE L1 1611 1765 -742 312 262 27 81 chr4 96606061 96606210 -87682452 + HAL1b LINE L1 737 877 -471 314 216 0 62 chr4 96606409 96606506 -87682156 + HAL1 LINE L1 2305 2395 -112 1531 152 48 0 chr4 96608709 96608978 -87679684 + L1MA9 LINE L1 5504 5785 -515 622 154 0 0 chr4 96608978 96609082 -87679580 + AluSp/q SINE Alu 207 310 -3 2379 171 32 24 chr4 96609083 96609581 -87679081 + L1MA9 LINE L1 5770 6271 -41 225 174 43 0 chr4 96609840 96609886 -87678776 - L1P LINE L1 -1242 4904 4857 * 5037 147 33 1 chr4 96609883 96610729 -87677933 + L1PA16 LINE L1 5293 6165 -1 2004 117 4 0 chr4 96611975 96612256 -87676406 + AluY SINE Alu 16 297 -14 242 330 28 9 chr4 96613846 96613955 -87674707 - L2 LINE L2 -2 3270 3160 243 259 0 0 chr4 96614140 96614194 -87674468 + MIR SINE MIR 197 250 -12 23 0 0 0 chr4 96616151 96616174 -87672488 + AT_rich Low_complexity Low_complexity 1 23 0 192 125 0 0 chr4 96616617 96616649 -87672013 + (CA)n Simple_repeat Simple_repeat 1 32 0 241 253 25 13 chr4 96617131 96617210 -87671452 + MLT1L LTR MaLR 195 274 -341 225 271 153 24 chr4 96617360 96617445 -87671217 + MLT1J LTR MaLR 321 416 -95 2203 120 27 27 chr4 96617459 96617834 -87670828 + THE1C LTR MaLR 1 375 0 23 0 0 0 chr4 96618803 96618826 -87669836 + AT_rich Low_complexity Low_complexity 1 23 0 2640 194 55 78 chr4 96618883 96619642 -87669020 - L1MA9 LINE L1 -81 6231 5490 311 206 30 36 chr4 96619708 96619873 -87668789 + (TATAA)n Simple_repeat Simple_repeat 3 166 0 396 222 103 0 chr4 96619949 96620066 -87668596 + MER103 DNA DNA 3 131 -35 31 68 0 0 chr4 96620186 96620245 -87668417 + AT_rich Low_complexity Low_complexity 1 59 0 253 347 30 6 chr4 96620245 96620412 -87668250 - HAL1b LINE L1 -606 742 572 728 231 5 0 chr4 96620631 96620817 -87667845 - L1ME1 LINE L1 -267 5899 5713 2066 130 10 0 chr4 96620948 96621247 -87667415 + AluSq SINE Alu 6 307 -6 553 251 32 23 chr4 96621926 96622139 -87666523 - L1MB5 LINE L1 -168 6708 6517 249 83 0 0 chr4 96622140 96622176 -87666486 + (T)n Simple_repeat Simple_repeat 1 36 0 3571 221 45 45 chr4 96622212 96623955 -87664707 - L1MB5 LINE L1 -351 6517 4788 282 318 32 0 chr4 96623951 96624077 -87664585 - L1MB5 LINE L1 -2535 4313 4184 * 1700 178 77 27 chr4 96624082 96624448 -87664214 + L1MC1 LINE L1 5937 6320 -13 25 51 0 0 chr4 96624464 96624503 -87664159 + AT_rich Low_complexity Low_complexity 1 39 0 1976 246 50 12 chr4 96624552 96625236 -87663426 - L1MB5 LINE L1 -2784 4064 3355 * 8712 232 77 22 chr4 96625229 96628614 -87660048 - L1M4c LINE L1 -832 5572 1273 35972 99 11 11 chr4 96628667 96634810 -87653852 - L1PA6 LINE L1 0 6154 10 4276 229 50 16 chr4 96634827 96636152 -87652510 - L1MB5 LINE L1 -4995 1854 649 227 358 11 28 chr4 96636471 96636647 -87652015 - L1MB5 LINE L1 -6674 175 3 * 267 367 42 8 chr4 96636634 96636754 -87651908 - L1PA15-16 LINE L1 -5419 1443 1320 690 332 76 47 chr4 96636773 96637525 -87651137 - L1PA15-16 LINE L1 -5485 1378 605 1105 233 12 92 chr4 96637582 96638059 -87650603 - L1MEc LINE L1 -3486 2729 2330 243 341 44 11 chr4 96639465 96639556 -87649106 - L2 LINE L2 -5 3308 3215 379 341 66 82 chr4 96639731 96640291 -87648371 - L2 LINE L2 -341 2973 2423 206 327 55 9 chr4 96640320 96640430 -87648232 - L2 LINE L2 -975 2339 2225 602 313 76 5 chr4 96640853 96641077 -87647585 - LTR16C LTR ERVL -5 486 247 1084 245 130 119 chr4 96641242 96641949 -87646713 - MER21B LTR ERV1 -128 735 21 1627 164 57 35 chr4 96643885 96644252 -87644410 - THE1C LTR MaLR 0 375 1 256 316 177 45 chr4 96644420 96644686 -87643976 - L2 LINE L2 -454 2860 2560 329 266 18 64 chr4 96644758 96644867 -87643795 - L2 LINE L2 -34 3279 3176 422 284 150 45 chr4 96644921 96645280 -87643382 + LTR16A LTR ERVL 61 457 0 3143 305 98 58 chr4 96645280 96647535 -87641127 + HERV16 LTR ERVL 1 2346 -2650 15112 162 26 13 chr4 96649100 96653586 -87635076 - L1MA3 LINE L1 0 7724 3174 28 0 0 0 chr4 96654078 96654106 -87634556 + AT_rich Low_complexity Low_complexity 1 28 0 681 198 62 17 chr4 96655013 96655190 -87633472 + MER53 DNA DNA 5 189 0 307 327 30 0 chr4 96655495 96655596 -87633066 + L1MEd LINE L1 521 624 -5495 249 350 49 8 chr4 96655617 96655740 -87632922 + MLT1I LTR MaLR 3 130 -279 366 246 254 22 chr4 96656317 96656451 -87632211 + MLT1I LTR MaLR 1 165 -244 517 275 36 58 chr4 96656841 96657205 -87631457 - L1M4 LINE L1 -3314 2832 2477 447 207 59 18 chr4 96657339 96657508 -87631154 + L1M4 LINE L1 2865 3040 -3106 613 274 159 18 chr4 96657699 96657925 -87630737 - MIR SINE MIR 0 262 5 2353 50 0 3 chr4 96659365 96659676 -87628986 + AluY SINE Alu 1 310 0 249 311 179 0 chr4 96661035 96661186 -87627476 + MIR SINE MIR 82 259 -3 364 341 89 17 chr4 96661572 96661751 -87626911 - MIR SINE MIR -51 211 20 1836 173 0 3 chr4 96661837 96662126 -87626536 - AluJo SINE Alu -24 288 1 231 36 0 0 chr4 96662190 96662218 -87626444 + (CA)n Simple_repeat Simple_repeat 1 28 0 183 337 12 23 chr4 96662632 96662718 -87625944 - L2 LINE L2 0 3272 3188 384 357 33 17 chr4 96663040 96663280 -87625382 - MIR SINE MIR -19 243 5 318 311 19 0 chr4 96663314 96663420 -87625242 - LTR16A LTR ERVL -8 442 335 431 331 47 12 chr4 96663472 96663644 -87625018 - LTR16A LTR ERVL -252 198 21 405 222 170 104 chr4 96664851 96664988 -87623674 + Charlie7 DNA MER1_type 227 384 -2228 902 83 8 0 chr4 96664988 96665120 -87623542 + L1PA14 LINE L1 6025 6157 -4 405 222 170 104 chr4 96665120 96665194 -87623468 + Charlie7 DNA MER1_type 384 452 -2160 2250 258 51 26 chr4 96665200 96666037 -87622625 + Charlie7 DNA MER1_type 735 1592 -1020 30435 110 18 59 chr4 96666046 96672463 -87616199 + L1PA7 LINE L1 10 6154 0 1726 218 201 19 chr4 96672572 96673438 -87615224 + Charlie7 DNA MER1_type 1583 2606 -6 273 314 128 13 chr4 96673845 96674001 -87614661 + MIR SINE MIR 13 186 -76 183 188 0 0 chr4 96674163 96674211 -87614451 + CT-rich Low_complexity Low_complexity 2 49 0 8350 253 77 19 chr4 96674250 96676408 -87612254 - L1ME1 LINE L1 -10 6225 4193 285 75 0 0 chr4 96676408 96676448 -87612214 + (TG)n Simple_repeat Simple_repeat 2 41 0 8350 253 77 19 chr4 96676448 96676916 -87611746 - L1ME1 LINE L1 -2042 4193 3753 237 65 0 0 chr4 96676916 96676947 -87611715 + (TA)n Simple_repeat Simple_repeat 1 31 0 8350 253 77 19 chr4 96676947 96678024 -87610638 - L1ME1 LINE L1 -2482 3753 2740 2027 88 4 0 chr4 96678024 96678296 -87610366 + L1PA11 LINE L1 5902 6174 0 8350 253 77 19 chr4 96678296 96678405 -87610257 - L1ME1 LINE L1 -3495 2740 2639 691 241 92 10 chr4 96678405 96678600 -87610062 + MER58C DNA MER1_type 3 213 -2 8350 253 77 19 chr4 96678600 96678794 -87609868 - L1ME1 LINE L1 -3596 2639 1993 1166 294 56 33 chr4 96678810 96679516 -87609146 - L1ME1 LINE L1 -4435 1961 1199 1610 173 44 35 chr4 96679518 96679722 -87608940 + MER2 DNA MER2_type 1 211 -134 1863 127 101 3 chr4 96679722 96680029 -87608633 + MER1B DNA MER1_type 1 337 0 1610 173 44 35 chr4 96680029 96680166 -87608496 + MER2 DNA MER2_type 211 345 0 252 276 23 0 chr4 96680189 96680276 -87608386 - L1ME1 LINE L1 -5219 1177 1089 2559 213 32 22 chr4 96680283 96680836 -87607826 - MER82 DNA MER2_type 0 653 95 1028 222 179 101 chr4 96680836 96681170 -87607492 + MLT1A1 LTR MaLR 1 372 -56 1653 193 3 13 chr4 96681170 96681471 -87607191 - AluJo SINE Alu 0 312 15 1028 222 179 101 chr4 96681471 96681532 -87607130 + MLT1A1 LTR MaLR 372 427 -1 1418 216 40 8 chr4 96681631 96682010 -87606652 - L1ME1 LINE L1 -5334 1062 672 262 313 25 0 chr4 96682170 96682250 -87606412 - L1ME1 LINE L1 -6034 362 281 * 41578 76 9 3 chr4 96682248 96689876 -87598786 + L1PA4 LINE L1 193 6155 0 5688 164 34 1 chr4 96689739 96690753 -87597909 + L1MA6 LINE L1 5254 6300 0 * 198 0 0 0 chr4 96692298 96692320 -87596342 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 227 315 138 15 chr4 96694175 96694305 -87594357 - MIR3 SINE MIR -16 192 47 352 297 25 0 chr4 96694427 96694545 -87594117 + HsTC2 DNA Tc2 1 121 -1777 780 126 0 30 chr4 96694603 96694738 -87593924 + FRAM SINE Alu 41 171 -5 671 242 47 5 chr4 96694742 96694932 -87593730 + HsTC2 DNA Tc2 1528 1725 -173 1995 210 19 93 chr4 96695007 96695597 -87593065 - MLT2B3 LTR ERVL -8 546 1 2171 172 29 22 chr4 96695620 96696032 -87592630 + MSTC LTR MaLR 14 428 0 504 341 6 30 chr4 96696408 96696572 -87592090 + MER91A DNA MER1_type 1 160 -36 2136 92 3 11 chr4 96697470 96697786 -87590876 + AluSc SINE Alu 1 314 0 658 103 0 0 chr4 96697855 96697952 -87590710 + AluSc SINE Alu 213 309 0 201 132 0 0 chr4 96698893 96698931 -87589731 + (CA)n Simple_repeat Simple_repeat 1 38 0 1259 194 44 88 chr4 96700293 96700701 -87587961 - MLT1B LTR MaLR 0 390 1 293 245 177 54 chr4 96701116 96701263 -87587399 + MER20B DNA MER1_type 6 170 -613 223 355 64 43 chr4 96701591 96701784 -87586878 - L2 LINE L2 -222 3050 2844 2134 112 27 0 chr4 96701784 96702079 -87586583 + AluSx SINE Alu 1 303 -9 223 355 64 43 chr4 96702079 96702208 -87586454 - L2 LINE L2 -428 2844 2719 805 295 25 0 chr4 96703612 96703853 -87584809 - MIR SINE MIR -13 249 3 675 204 82 35 chr4 96703962 96704193 -87584469 - L1MD3 LINE L1 0 7995 7754 * 690 233 138 5 chr4 96704170 96704359 -87584303 - L1MC4 LINE L1 -1132 6910 6697 969 192 20 0 chr4 96704368 96704566 -87584096 + L1PBa LINE L1 2 203 -6660 * 3246 145 9 13 chr4 96704561 96705092 -87583570 + L1PBa LINE L1 634 1162 -5701 712 112 0 0 chr4 96705093 96705200 -87583462 + L1PBa LINE L1 1313 1419 -5444 * 1399 237 0 0 chr4 96705198 96705544 -87583118 + L1PB1 LINE L1 4955 5300 -846 478 87 0 0 chr4 96705542 96705611 -87583051 - L1P LINE L1 -742 5409 5341 * 3562 79 4 0 chr4 96705681 96706164 -87582498 + L1PB1 LINE L1 5306 5790 -361 258 148 37 56 chr4 96706165 96706273 -87582389 + (TA)n Simple_repeat Simple_repeat 2 107 0 2556 91 8 11 chr4 96706285 96706659 -87582003 + L1PB1 LINE L1 5779 6151 0 1258 216 71 17 chr4 96706747 96707146 -87581516 - L1MC4a LINE L1 -1191 6617 6266 5208 187 24 16 chr4 96707596 96709453 -87579209 - L1PA16 LINE L1 -3 6163 4289 463 241 0 0 chr4 96709451 96709563 -87579099 - L1M4 LINE L1 -1114 5032 4921 * 972 247 53 4 chr4 96710317 96710544 -87578118 - MER8 DNA MER2_type 0 239 2 1893 249 88 14 chr4 96711067 96711658 -87577004 + L1ME3 LINE L1 5440 6074 -88 876 229 61 8 chr4 96711673 96711917 -87576745 + MER57A LTR ERV1 1 272 -131 418 139 0 14 chr4 96711971 96712043 -87576619 + LTR54 LTR ERV1 435 505 -5 24 32 0 0 chr4 96712666 96712697 -87575965 + AT_rich Low_complexity Low_complexity 1 31 0 738 254 29 0 chr4 96713412 96713585 -87575077 + MER5A DNA MER1_type 1 178 -11 247 229 14 57 chr4 96714014 96714084 -87574578 + MLT1J2 LTR MaLR 97 163 -287 973 220 0 0 chr4 96714161 96714334 -87574328 - MER5A DNA MER1_type 0 189 17 235 311 68 20 chr4 96714349 96714497 -87574165 + MLT1J2 LTR MaLR 258 412 -38 210 333 0 0 chr4 96714842 96714893 -87573769 + L2 LINE L2 3185 3235 -37 360 224 68 102 chr4 96715028 96715175 -87573487 - L2 LINE L2 -4 3309 3168 513 32 0 0 chr4 96715962 96716025 -87572637 + (TGGA)n Simple_repeat Simple_repeat 2 64 0 226 284 8 30 chr4 96716278 96716412 -87572250 + L1ME LINE L1 5704 5834 -287 315 0 0 0 chr4 96716481 96716516 -87572146 + (TG)n Simple_repeat Simple_repeat 1 35 0 207 0 0 0 chr4 96716515 96716538 -87572124 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 191 114 29 0 chr4 96717147 96717182 -87571480 + (TA)n Simple_repeat Simple_repeat 2 37 0 29 0 0 0 chr4 96717209 96717238 -87571424 + AT_rich Low_complexity Low_complexity 1 29 0 663 97 0 4 chr4 96717445 96717663 -87570999 - AluY SINE Alu -10 301 2 1781 144 61 0 chr4 96718861 96719139 -87569523 + AluSx SINE Alu 1 295 -17 21 57 0 0 chr4 96719372 96719407 -87569255 + AT_rich Low_complexity Low_complexity 1 35 0 470 289 66 20 chr4 96720691 96720888 -87567774 - MIR SINE MIR -9 253 48 184 262 0 0 chr4 96721470 96721512 -87567150 - MIR3 SINE MIR -16 192 151 191 256 0 0 chr4 96721722 96721761 -87566901 - MIR SINE MIR -57 151 113 207 321 36 36 chr4 96722311 96722423 -87566239 + MIR3 SINE MIR 5 116 -92 3975 44 0 0 chr4 96722918 96723400 -87565262 - L1PA3 LINE L1 0 6155 5674 24 0 0 0 chr4 96723400 96723424 -87565238 + AT_rich Low_complexity Low_complexity 1 24 0 597 181 163 6 chr4 96725143 96725303 -87563359 + MER53 DNA DNA 2 186 -3 276 264 190 37 chr4 96725332 96725361 -87563301 - MIR SINE MIR -74 188 165 201 39 0 0 chr4 96725361 96725387 -87563275 + (TTA)n Simple_repeat Simple_repeat 3 28 0 276 264 190 37 chr4 96725387 96725505 -87563157 - MIR SINE MIR -97 165 12 1790 181 24 9 chr4 96725505 96725842 -87562820 + MER2 DNA MER2_type 2 343 -1 276 264 190 37 chr4 96725842 96725856 -87562806 - MIR SINE MIR -250 12 1 228 143 0 0 chr4 96726011 96726053 -87562609 + (TCTA)n Simple_repeat Simple_repeat 2 43 0 303 306 76 49 chr4 96727267 96727411 -87561251 + MER117 DNA MER1_type 50 197 0 1245 179 10 13 chr4 96727598 96727888 -87560774 + MLT1A1 LTR MaLR 1 365 0 370 336 154 0 chr4 96728730 96728873 -87559789 + MER91A DNA MER1_type 30 194 -2 3140 95 2 13 chr4 96729804 96729895 -87558767 + L1PB1 LINE L1 5701 5791 -360 315 49 0 0 chr4 96729895 96729936 -87558726 + (TG)n Simple_repeat Simple_repeat 2 42 0 3140 95 2 13 chr4 96729936 96730295 -87558367 + L1PB1 LINE L1 5791 6146 -5 306 311 205 41 chr4 96731102 96731612 -87557050 - L2 LINE L2 -56 3257 2642 210 225 67 34 chr4 96731624 96731713 -87556949 - L2 LINE L2 -831 2483 2392 353 300 171 31 chr4 96732087 96732374 -87556288 - HAL1b LINE L1 -989 359 33 2183 126 0 0 chr4 96732462 96732771 -87555891 - AluSq SINE Alu 0 313 5 1398 163 0 0 chr4 96732927 96733136 -87555526 - AluJb SINE Alu -101 211 3 387 318 131 21 chr4 96733137 96733420 -87555242 + L2 LINE L2 2192 2505 -809 2012 153 30 0 chr4 96733848 96734181 -87554481 + MER7A DNA MER2_type 5 345 -1 23 0 0 0 chr4 96734293 96734316 -87554346 + AT_rich Low_complexity Low_complexity 1 23 0 191 239 0 0 chr4 96734447 96734493 -87554169 + L2 LINE L2 3263 3308 -5 2350 66 27 3 chr4 96734529 96734830 -87553832 + AluY SINE Alu 2 309 -2 2393 86 3 13 chr4 96735418 96735733 -87552929 + AluSp SINE Alu 2 313 0 2394 87 0 0 chr4 96737504 96737815 -87550847 + AluY SINE Alu 1 311 0 35 24 0 0 chr4 96738068 96738110 -87550552 + AT_rich Low_complexity Low_complexity 1 42 0 1306 277 70 30 chr4 96738908 96739371 -87549291 + L1ME3A LINE L1 2659 3171 -2975 2295 107 0 7 chr4 96739371 96739680 -87548982 + AluSx SINE Alu 3 309 -3 1306 277 70 30 chr4 96739680 96740050 -87548612 + L1ME3A LINE L1 3171 3525 -2621 929 238 30 78 chr4 96740065 96740464 -87548198 + L1ME3A LINE L1 5254 5633 -529 1152 284 60 14 chr4 96740625 96741040 -87547622 + L1ME3A LINE L1 5696 6129 -41 26 0 0 0 chr4 96741839 96741865 -87546797 + AT_rich Low_complexity Low_complexity 1 26 0 876 208 124 69 chr4 96741899 96741952 -87546710 - MSTC LTR MaLR -5 391 342 2272 97 3 0 chr4 96741952 96742260 -87546402 - AluY SINE Alu -2 309 1 876 208 124 69 chr4 96742260 96742585 -87546077 - MSTC LTR MaLR -54 342 1 2019 139 0 7 chr4 96742833 96743134 -87545528 + AluJb SINE Alu 1 299 -13 501 309 73 0 chr4 96744827 96744992 -87543670 + MER5B DNA MER1_type 2 178 0 1827 142 3 80 chr4 96746477 96746815 -87541847 - AluJb SINE Alu 0 312 1 308 216 14 0 chr4 96746881 96746955 -87541707 - MER116 DNA Mariner -5 75 1 255 287 178 20 chr4 96747069 96747170 -87541492 - MIR SINE MIR -114 148 32 229 369 0 0 chr4 96750234 96750318 -87538344 + L1MC4a LINE L1 5582 5665 -2143 597 271 41 8 chr4 96750330 96750574 -87538088 + L1MC4a LINE L1 5704 5955 -1853 270 289 72 47 chr4 96750948 96751183 -87537479 + L1MC4a LINE L1 6414 6654 -1154 277 239 0 15 chr4 96751210 96751277 -87537385 - MER63 DNA MER1_type -1 1060 995 240 214 12 133 chr4 96751375 96751548 -87537114 + L1MC5 LINE L1 6892 7043 -918 1729 196 87 116 chr4 96751565 96751772 -87536890 + LTR1B LTR ERV1 1 212 -614 1945 124 4 4 chr4 96751772 96752047 -87536615 + AluSq SINE Alu 9 283 -30 1729 196 87 116 chr4 96752047 96752606 -87536056 + LTR1B LTR ERV1 212 745 -81 477 256 8 8 chr4 96752685 96752806 -87535856 + LTR28 LTR ERV1 900 1020 0 277 233 58 0 chr4 96752811 96752897 -87535765 + L1MC5 LINE L1 7114 7204 -757 2112 233 94 40 chr4 96753057 96753740 -87534922 - MER21B LTR ERV1 -124 739 20 401 228 0 0 chr4 96753760 96753839 -87534823 - MER21B LTR ERV1 -773 90 12 318 252 46 26 chr4 96753854 96754005 -87534657 + L1MC5 LINE L1 7339 7492 -469 596 213 49 68 chr4 96754105 96754368 -87534294 + L1MC5 LINE L1 7520 7777 -184 291 227 0 15 chr4 96754430 96754496 -87534166 + MER5A DNA MER1_type 28 92 -97 403 264 14 0 chr4 96755767 96755907 -87532755 - L1MA10 LINE L1 -11 6323 6182 1947 239 43 13 chr4 96755984 96756590 -87532072 - L1ME1 LINE L1 -247 5919 5296 1644 212 28 0 chr4 96756585 96756976 -87531686 - L1MA8 LINE L1 -1955 4191 3790 * 1947 148 146 0 chr4 96756976 96757441 -87531221 + L1MA8 LINE L1 4201 4733 -1413 691 172 14 0 chr4 96757430 96757575 -87531087 + L1MA8 LINE L1 5062 5208 -938 * 2463 105 128 5 chr4 96757575 96757974 -87530688 - LTR7 LTR ERV1 -2 448 1 2293 93 48 13 chr4 96757974 96758351 -87530311 - HERVH LTR ERV1 0 7713 7324 1313 108 25 0 chr4 96758351 96758554 -87530108 - HERVH LTR ERV1 -1894 5819 5612 1132 159 0 0 chr4 96758568 96758757 -87529905 - HERVH LTR ERV1 -2564 5149 4961 * 3965 119 6 4 chr4 96758756 96759394 -87529268 - HERVH LTR ERV1 -3092 4621 3994 3169 154 26 7 chr4 96759404 96759990 -87528672 - HERVH LTR ERV1 -3977 3736 3140 * 16225 127 32 30 chr4 96759969 96762959 -87525703 - HERVH LTR ERV1 -4718 2995 1 1975 99 6 7 chr4 96762967 96763358 -87525304 - LTR7 LTR ERV1 -8 442 1 2634 172 10 1 chr4 96763359 96763943 -87524719 + L1MA8 LINE L1 5203 5793 -498 189 125 54 0 chr4 96763948 96764004 -87524658 + (TA)n Simple_repeat Simple_repeat 2 60 0 226 165 41 52 chr4 96764008 96764105 -87524557 + (TTATA)n Simple_repeat Simple_repeat 5 100 0 204 138 88 6 chr4 96764124 96764283 -87524379 + (TA)n Simple_repeat Simple_repeat 2 173 0 2044 161 74 7 chr4 96764329 96764775 -87523887 + L1MA8 LINE L1 5816 6291 0 183 42 0 0 chr4 96764844 96764868 -87523794 + (TTA)n Simple_repeat Simple_repeat 1 24 0 473 228 59 0 chr4 96764868 96764969 -87523693 - FRAM SINE Alu -30 146 40 6953 176 37 11 chr4 96764989 96766976 -87521686 - L1MA5 LINE L1 -2 6298 4232 1962 115 4 0 chr4 96766976 96767236 -87521426 - AluSq SINE Alu -15 298 38 6953 176 37 11 chr4 96767236 96767706 -87520956 - L1MA5 LINE L1 -2068 4232 3776 1300 248 62 42 chr4 96767701 96767845 -87520817 - L1MEc LINE L1 -3873 2523 2383 * 1153 195 183 12 chr4 96767845 96768102 -87520560 - AluJo SINE Alu -1 301 1 1300 248 62 42 chr4 96768102 96768672 -87519990 - L1MEc LINE L1 -4013 2383 1795 1504 300 21 27 chr4 96768673 96769186 -87519476 + LTR40a LTR ERVL 3 512 -7 1246 270 75 19 chr4 96769189 96769968 -87518694 - L1MEc LINE L1 -4593 1803 982 339 250 21 52 chr4 96770004 96770100 -87518562 - MER96 DNA MER1_type? -3 172 80 1148 251 12 45 chr4 96770117 96770463 -87518199 - L1MEc LINE L1 -5457 939 583 1916 162 125 8 chr4 96770463 96770846 -87517816 + MSTA LTR MaLR 1 428 0 9264 138 9 42 chr4 96770848 96772480 -87516182 + MSTA-int LTR MaLR 3 1580 0 1383 152 128 114 chr4 96772480 96772902 -87515760 + MSTA LTR MaLR 1 428 0 1148 251 12 45 chr4 96772902 96772953 -87515709 - L1MEc LINE L1 -5812 584 551 505 289 34 60 chr4 96772936 96773076 -87515586 - L1MEc LINE L1 -6129 267 133 * 2196 114 0 0 chr4 96773076 96773387 -87515275 + AluSg SINE Alu 1 311 0 505 289 34 60 chr4 96773387 96773480 -87515182 - L1MEc LINE L1 -6263 133 39 21 0 0 0 chr4 96773646 96773667 -87514995 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 96773999 96774029 -87514633 + AT_rich Low_complexity Low_complexity 1 30 0 290 241 9 62 chr4 96774106 96774218 -87514444 - L1MC4 LINE L1 -1 8041 7936 2168 111 7 3 chr4 96774271 96774569 -87514093 - AluSc SINE Alu -4 305 7 1498 164 77 17 chr4 96774569 96774856 -87513806 - AluJo SINE Alu -8 304 1 226 344 16 0 chr4 96776001 96776062 -87512600 + L2 LINE L2 3164 3225 -47 189 107 0 0 chr4 96776087 96776115 -87512547 + (A)n Simple_repeat Simple_repeat 1 28 0 303 360 39 13 chr4 96776459 96776612 -87512050 + L2 LINE L2 3116 3272 0 193 265 8 26 chr4 96776693 96776810 -87511852 + GA-rich Low_complexity Low_complexity 2 116 0 228 114 0 0 chr4 96778268 96778303 -87510359 - L2 LINE L2 0 3313 3279 2235 77 7 7 chr4 96779268 96779555 -87509107 + AluY SINE Alu 24 310 -1 22 80 0 0 chr4 96780630 96780680 -87507982 + AT_rich Low_complexity Low_complexity 1 50 0 706 262 30 15 chr4 96780691 96780958 -87507704 - L1ME1 LINE L1 -18 6148 5878 1987 162 0 10 chr4 96781154 96781468 -87507194 - AluSx SINE Alu -1 311 1 2578 50 0 0 chr4 96781488 96781789 -87506873 - AluY SINE Alu -10 301 1 1061 201 79 8 chr4 96781795 96782049 -87506613 + LTR40a LTR ERVL 244 515 -4 2537 223 70 38 chr4 96782053 96782110 -87506552 - L1ME1 LINE L1 -284 5882 5828 1896 208 44 18 chr4 96782110 96782563 -87506099 - MLT1C LTR MaLR 0 467 3 2537 223 70 38 chr4 96782563 96782856 -87505806 - L1ME1 LINE L1 -338 5828 5546 2556 68 0 0 chr4 96782856 96783164 -87505498 - AluY SINE Alu -3 308 1 2537 223 70 38 chr4 96783164 96784214 -87504448 - L1ME1 LINE L1 -620 5546 4457 324 287 46 59 chr4 96784295 96784426 -87504236 + MER110A LTR ERV1 198 329 -139 2537 58 3 6 chr4 96784426 96784738 -87503924 + AluY SINE Alu 1 311 0 324 287 46 59 chr4 96784738 96784878 -87503784 + MER110A LTR ERV1 329 466 -2 410 244 170 26 chr4 96784893 96785122 -87503540 + MLT1L LTR MaLR 337 598 -17 571 324 23 32 chr4 96785483 96785702 -87502960 - MIR SINE MIR 0 262 46 180 0 0 0 chr4 96786386 96786406 -87502256 + (CAA)n Simple_repeat Simple_repeat 2 21 0 181 116 188 87 chr4 96786651 96786720 -87501942 + MER5B DNA MER1_type 7 82 -96 205 286 142 36 chr4 96787078 96787245 -87501417 - L2 LINE L2 -315 2957 2778 235 300 25 12 chr4 96787586 96787666 -87500996 - L3 LINE CR1 -11 1566 1486 210 118 0 0 chr4 96791168 96791202 -87497460 + (T)n Simple_repeat Simple_repeat 1 34 0 261 0 0 0 chr4 96791703 96791732 -87496930 + (A)n Simple_repeat Simple_repeat 1 29 0 315 214 0 43 chr4 96794316 96794386 -87494276 + L2 LINE L2 3203 3269 -3 285 29 0 0 chr4 96795230 96795264 -87493398 + (A)n Simple_repeat Simple_repeat 1 34 0 394 276 71 0 chr4 96797357 96797484 -87491178 - MER3 DNA MER1_type 0 209 74 34 42 0 0 chr4 96798371 96798419 -87490243 + AT_rich Low_complexity Low_complexity 1 48 0 26 0 0 0 chr4 96798939 96798965 -87489697 + AT_rich Low_complexity Low_complexity 1 26 0 186 250 0 0 chr4 96799099 96799155 -87489507 + (TA)n Simple_repeat Simple_repeat 1 56 0 444 19 0 0 chr4 96799158 96799211 -87489451 + (CA)n Simple_repeat Simple_repeat 2 54 0 634 284 121 15 chr4 96799224 96799488 -87489174 + L2 LINE L2 2281 2572 -742 1212 185 73 24 chr4 96799499 96799786 -87488876 - L1MB8 LINE L1 -5 6173 5873 707 288 39 97 chr4 96799786 96800516 -87488146 + L2 LINE L2 2590 3312 -1 1960 117 7 11 chr4 96800864 96801175 -87487487 + AluSx SINE Alu 1 310 0 288 309 128 0 chr4 96801398 96801492 -87487170 + MIR SINE MIR 86 191 -71 186 335 113 53 chr4 96801595 96801851 -87486811 + L2 LINE L2 1851 2090 -1224 1306 206 22 6 chr4 96801851 96802166 -87486496 + MER33 DNA MER1_type 1 320 -4 186 335 113 53 chr4 96802166 96802280 -87486382 + L2 LINE L2 2090 2196 -1118 2366 90 0 3 chr4 96802280 96802592 -87486070 - AluY SINE Alu 0 311 1 186 335 113 53 chr4 96802592 96802823 -87485839 + L2 LINE L2 2196 2489 -825 468 320 121 48 chr4 96802828 96803309 -87485353 - LTR67 LTR ERVL -2 555 40 30 27 0 0 chr4 96803464 96803501 -87485161 + AT_rich Low_complexity Low_complexity 1 37 0 215 339 95 18 chr4 96803849 96804017 -87484645 + MIR SINE MIR 68 248 -14 2398 82 0 0 chr4 96804245 96804548 -87484114 - AluSg SINE Alu -7 303 1 201 344 0 0 chr4 96804600 96804661 -87484001 + L2 LINE L2 3243 3303 -10 448 317 96 18 chr4 96804965 96805246 -87483416 + L2 LINE L2 2833 3135 -178 28 86 0 0 chr4 96807152 96807222 -87481440 + AT_rich Low_complexity Low_complexity 1 70 0 2183 106 13 10 chr4 96807310 96807613 -87481049 - AluSx SINE Alu -6 306 3 180 0 0 0 chr4 96808055 96808075 -87480587 + (T)n Simple_repeat Simple_repeat 1 20 0 204 40 0 0 chr4 96808679 96808704 -87479958 + (T)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr4 96809433 96809454 -87479208 + AT_rich Low_complexity Low_complexity 1 21 0 2200 92 7 7 chr4 96809474 96809768 -87478894 + AluSp SINE Alu 1 294 -19 662 285 32 0 chr4 96811164 96811322 -87477340 - MER63A DNA MER1_type 0 210 48 230 318 24 8 chr4 96811715 96811841 -87476821 + L1MC4 LINE L1 7914 8041 -1 27 62 0 0 chr4 96812371 96812419 -87476243 + AT_rich Low_complexity Low_complexity 1 48 0 628 230 128 25 chr4 96813258 96813493 -87475169 - Charlie2 DNA MER1_type -106 2756 2498 478 189 42 0 chr4 96813522 96813617 -87475045 - FLAM_A SINE Alu -28 114 16 325 176 25 142 chr4 96813647 96813886 -87474776 - Charlie2 DNA MER1_type -421 2441 2231 840 246 94 44 chr4 96813899 96814240 -87474422 - Charlie2 DNA MER1_type -2504 358 1 261 0 0 0 chr4 96814391 96814420 -87474242 + (A)n Simple_repeat Simple_repeat 1 29 0 30 0 0 0 chr4 96816013 96816043 -87472619 + AT_rich Low_complexity Low_complexity 1 30 0 501 305 21 0 chr4 96816263 96816404 -87472258 + MIR SINE MIR 2 145 -117 373 263 125 13 chr4 96816401 96816553 -87472109 - MIR SINE MIR -38 224 56 * 254 305 0 0 chr4 96818905 96818964 -87469698 + L2 LINE L2 3147 3205 -67 23 54 0 0 chr4 96820005 96820042 -87468620 + AT_rich Low_complexity Low_complexity 1 37 0 292 230 40 14 chr4 96821726 96821874 -87466788 + (TTATA)n Simple_repeat Simple_repeat 4 155 0 537 235 98 22 chr4 96821963 96822146 -87466516 + MIR SINE MIR 18 214 -48 1911 146 7 7 chr4 96822945 96823240 -87465422 - AluSx SINE Alu -16 296 2 256 220 0 0 chr4 96824717 96824767 -87463895 + L2 LINE L2 3264 3313 0 1195 129 62 14 chr4 96825765 96825974 -87462688 + MER2 DNA MER2_type 127 345 0 1323 201 90 0 chr4 96825980 96826248 -87462414 - AluJo SINE Alu -20 292 1 1134 124 18 32 chr4 96829715 96829932 -87458730 - L1MA5A LINE L1 0 6297 6084 785 323 15 15 chr4 96830318 96830581 -87458081 - L3 LINE CR1 -356 1221 959 377 305 51 46 chr4 96831184 96831366 -87457296 - MIR SINE MIR -61 147 3 387 294 135 6 chr4 96831646 96831809 -87456853 - MIR SINE MIR -13 249 66 354 280 120 20 chr4 96831949 96832099 -87456563 + MIR3 SINE MIR 23 187 -21 1227 39 7 0 chr4 96833339 96833524 -87455138 + L1PA4 LINE L1 5983 6168 0 22 0 0 0 chr4 96834433 96834455 -87454207 + AT_rich Low_complexity Low_complexity 1 22 0 186 318 32 16 chr4 96834644 96834707 -87453955 + L2 LINE L2 3191 3254 -18 1101 148 0 18 chr4 96834713 96834882 -87453780 - FRAM SINE Alu -11 165 1 2456 150 7 40 chr4 96835287 96835733 -87452929 + Tigger2a DNA MER2_type 3 433 -1 265 354 10 10 chr4 96836144 96836240 -87452422 + MIR SINE MIR 56 151 -111 296 349 103 35 chr4 96837196 96837428 -87451234 + L3 LINE CR1 1329 1576 -1 625 254 51 35 chr4 96838057 96838313 -87450349 + MIR SINE MIR 3 262 0 1365 73 0 0 chr4 96838425 96838590 -87450072 + AluY SINE Alu 89 253 -58 234 0 0 0 chr4 96838800 96838826 -87449836 + (TG)n Simple_repeat Simple_repeat 2 27 0 2012 104 0 0 chr4 96838851 96839119 -87449543 - AluSg SINE Alu -15 295 28 2373 126 22 0 chr4 96840425 96840781 -87447881 - THE1B LTR MaLR 0 364 1 470 349 27 7 chr4 96841426 96841575 -87447087 + L2 LINE L2 3121 3272 0 200 270 0 0 chr4 96842533 96842570 -87446092 - MIR SINE MIR -131 77 41 1955 60 0 12 chr4 96844945 96845195 -87443467 - AluY SINE Alu -7 304 58 364 307 47 56 chr4 96845433 96845685 -87442977 + MIR SINE MIR 3 250 -12 280 321 9 37 chr4 96845848 96845957 -87442705 + MER5B DNA MER1_type 1 106 -72 2254 93 0 7 chr4 96849930 96850232 -87438430 + AluSq SINE Alu 1 300 -13 200 35 35 0 chr4 96850606 96850635 -87438027 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 207 0 0 0 chr4 96851407 96851430 -87437232 + (CA)n Simple_repeat Simple_repeat 2 24 0 252 59 0 0 chr4 96851430 96851464 -87437198 + (GA)n Simple_repeat Simple_repeat 1 34 0 33 25 0 0 chr4 96851659 96851699 -87436963 + AT_rich Low_complexity Low_complexity 1 40 0 1779 229 98 4 chr4 96852898 96853430 -87435232 - L1ME3A LINE L1 -5 6165 5584 194 400 0 8 chr4 96853515 96853635 -87435027 + L2 LINE L2 2935 3053 -219 243 303 79 73 chr4 96853772 96853875 -87434787 + L2 LINE L2 3107 3213 -59 2471 87 0 0 chr4 96853875 96854186 -87434476 + AluY SINE Alu 1 311 0 243 303 79 73 chr4 96854186 96854247 -87434415 + L2 LINE L2 3213 3272 0 257 343 39 10 chr4 96855072 96855174 -87433488 - MIR3 SINE MIR -14 194 90 2330 88 3 13 chr4 96855928 96856235 -87432427 + AluSx SINE Alu 1 304 -8 282 225 63 0 chr4 96856341 96856452 -87432210 + (TA)n Simple_repeat Simple_repeat 2 119 0 22 0 0 0 chr4 96856902 96856924 -87431738 + AT_rich Low_complexity Low_complexity 1 22 0 387 0 0 0 chr4 96857273 96857316 -87431346 + (TAA)n Simple_repeat Simple_repeat 1 43 0 253 67 22 22 chr4 96857316 96857361 -87431301 + (GGA)n Simple_repeat Simple_repeat 2 46 0 24 0 0 0 chr4 96857620 96857644 -87431018 + AT_rich Low_complexity Low_complexity 1 24 0 4421 73 0 40 chr4 96857883 96858511 -87430151 - L1PA7 LINE L1 0 6154 5552 1953 117 7 27 chr4 96858629 96858929 -87429733 + Tigger1 DNA MER2_type 2125 2418 0 189 175 0 0 chr4 96858953 96858993 -87429669 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 226 274 0 36 chr4 96859392 96859476 -87429186 + CT-rich Low_complexity Low_complexity 6 86 0 2212 107 0 0 chr4 96861009 96861300 -87427362 - AluSg SINE Alu -19 291 1 33 0 0 0 chr4 96865078 96865111 -87423551 + AT_rich Low_complexity Low_complexity 1 33 0 561 255 103 0 chr4 96866993 96867197 -87421465 - L1ME3 LINE L1 0 6162 5938 391 174 0 31 chr4 96867566 96867664 -87420998 + GA-rich Low_complexity Low_complexity 3 97 0 255 146 0 21 chr4 96867666 96867714 -87420948 + (GA)n Simple_repeat Simple_repeat 2 48 0 183 196 36 54 chr4 96869883 96869939 -87418723 + MIR SINE MIR 50 104 -158 2332 108 3 0 chr4 96870506 96870813 -87417849 - AluSc SINE Alu 0 309 2 210 254 0 0 chr4 96870920 96870979 -87417683 + A-rich Low_complexity Low_complexity 1 59 0 182 283 75 19 chr4 96871230 96871283 -87417379 + L2 LINE L2 3182 3237 -76 21 0 0 0 chr4 96871346 96871367 -87417295 + AT_rich Low_complexity Low_complexity 1 21 0 1282 184 9 0 chr4 96871414 96871637 -87417025 + AluJo SINE Alu 24 248 -64 428 176 0 0 chr4 96871643 96871711 -87416951 + AluJ/FRAM SINE Alu 216 283 -29 632 13 0 13 chr4 96871715 96871793 -87416869 + (GAAA)n Simple_repeat Simple_repeat 2 78 0 813 284 80 44 chr4 96871985 96872348 -87416314 + MLT1J LTR MaLR 135 510 -1 2193 102 3 13 chr4 96873835 96874139 -87414523 + AluSx SINE Alu 2 302 -10 320 394 35 6 chr4 96874482 96874652 -87414010 - MIR3 SINE MIR -1 207 33 216 97 0 0 chr4 96874659 96874690 -87413972 + (A)n Simple_repeat Simple_repeat 1 31 0 422 163 49 78 chr4 96874939 96875082 -87413580 - HsTC2 DNA Tc2 -3 1895 29 300 346 39 26 chr4 96875253 96875406 -87413256 - MIR SINE MIR -102 160 6 213 240 0 0 chr4 96875416 96875466 -87413196 + (TA)n Simple_repeat Simple_repeat 2 51 0 23 68 0 0 chr4 96875991 96876035 -87412627 + AT_rich Low_complexity Low_complexity 1 44 0 922 283 4 8 chr4 96876731 96876968 -87411694 + MIR SINE MIR 18 253 -9 491 314 114 20 chr4 96877752 96878058 -87410604 + L2 LINE L2 2968 3302 -11 294 265 0 78 chr4 96878301 96878403 -87410259 - MER5A DNA MER1_type -2 187 94 1755 51 9 0 chr4 96878602 96878818 -87409844 + AluY SINE Alu 83 300 -11 2239 80 7 0 chr4 96879102 96879390 -87409272 - AluSx SINE Alu -17 295 6 262 253 22 33 chr4 96879405 96879496 -87409166 + CT-rich Low_complexity Low_complexity 1 90 0 600 135 0 0 chr4 96879816 96879905 -87408757 + AluJ/FLAM SINE Alu 4 92 -220 26 30 0 0 chr4 96882061 96882094 -87406568 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr4 96883534 96883556 -87405106 + AT_rich Low_complexity Low_complexity 1 22 0 23 78 0 0 chr4 96884212 96884263 -87404399 + AT_rich Low_complexity Low_complexity 1 51 0 28 48 0 0 chr4 96884506 96884548 -87404114 + AT_rich Low_complexity Low_complexity 1 42 0 549 305 25 35 chr4 96884794 96884991 -87403671 + MIR SINE MIR 2 196 -66 180 0 0 0 chr4 96885068 96885088 -87403574 + (TTC)n Simple_repeat Simple_repeat 1 20 0 207 0 0 0 chr4 96885527 96885550 -87403112 + (T)n Simple_repeat Simple_repeat 1 23 0 261 0 0 0 chr4 96886073 96886102 -87402560 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 26 50 0 0 chr4 96887107 96887147 -87401515 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr4 96889569 96889590 -87399072 + AT_rich Low_complexity Low_complexity 1 21 0 600 219 16 16 chr4 96889730 96889853 -87398809 + L2 LINE L2 3190 3312 -1 249 366 0 36 chr4 96889920 96890032 -87398630 - L2 LINE L2 -226 3046 2939 842 165 0 0 chr4 96890119 96890252 -87398410 + AluJb SINE Alu 1 133 -179 189 326 105 0 chr4 96890379 96890474 -87398188 + MIR SINE MIR 94 198 -64 1865 116 60 18 chr4 96890909 96891371 -87397291 + AluSx SINE Alu 1 474 0 322 262 116 52 chr4 96891940 96892112 -87396550 - MLT1K LTR MaLR -263 325 143 1596 199 86 29 chr4 96893829 96894271 -87394391 + MLT1C LTR MaLR 1 467 0 195 42 0 0 chr4 96894317 96894341 -87394321 + (CAA)n Simple_repeat Simple_repeat 3 26 0 711 251 92 10 chr4 96894343 96894550 -87394112 - MIR SINE MIR -18 244 21 1420 102 35 35 chr4 96894739 96894993 -87393669 + L1MA5A LINE L1 6038 6291 -6 22 0 0 0 chr4 96894993 96895015 -87393647 + AT_rich Low_complexity Low_complexity 1 22 0 21547 110 14 46 chr4 96895025 96897513 -87391149 + L1PA7 LINE L1 12 2578 -3576 1802 143 3 34 chr4 96897513 96897849 -87390813 + AluSq SINE Alu 1 327 0 21547 110 14 46 chr4 96897849 96901800 -87386862 + L1PA7 LINE L1 2578 6154 0 624 309 70 72 chr4 96901951 96902353 -87386309 + L3 LINE CR1 1077 1477 -100 316 297 124 28 chr4 96902439 96902584 -87386078 + MIR SINE MIR 30 188 -74 359 236 118 0 chr4 96902710 96902837 -87385825 - HsTC2 DNA Tc2 -215 1683 1542 2018 111 0 0 chr4 96902850 96903120 -87385542 + AluSx SINE Alu 24 293 -19 1238 239 132 30 chr4 96903189 96903653 -87385009 - HsTC2 DNA Tc2 -1385 513 3 360 342 110 13 chr4 96904796 96905024 -87383638 + MIR SINE MIR 13 262 0 1250 175 18 9 chr4 96905025 96905253 -87383409 - MER46A DNA MER2_type 0 236 7 403 234 78 58 chr4 96905122 96905276 -87383386 + MER46A DNA MER2_type 10 166 -70 * 2292 79 3 16 chr4 96905631 96905934 -87382728 + AluY SINE Alu 1 299 -12 222 62 0 0 chr4 96906252 96906284 -87382378 + (T)n Simple_repeat Simple_repeat 1 32 0 642 314 135 12 chr4 96907638 96907682 -87380980 + L2 LINE L2 2722 2759 -554 1933 129 0 0 chr4 96907682 96907954 -87380708 + AluSx SINE Alu 29 300 -12 642 314 135 12 chr4 96907954 96908437 -87380225 + L2 LINE L2 2759 3313 0 238 318 0 0 chr4 96909031 96909119 -87379543 - MIR SINE MIR -1 261 174 729 184 0 8 chr4 96909142 96909267 -87379395 - FLAM_A SINE Alu -9 124 1 245 345 101 37 chr4 96909747 96910184 -87378478 + L2 LINE L2 1483 1947 -1367 550 323 96 74 chr4 96910272 96911267 -87377395 + L2 LINE L2 2178 3217 -55 297 314 68 24 chr4 96911450 96911698 -87376964 + MER112 DNA MER1_type 1 259 -1 3633 109 24 4 chr4 96911727 96912268 -87376394 + L1MA3 LINE L1 5517 6068 -237 224 283 200 72 chr4 96912822 96913002 -87375660 - MIR SINE MIR -6 256 54 2360 89 0 0 chr4 96913013 96913306 -87375356 - AluSg SINE Alu -17 293 1 896 266 48 4 chr4 96913306 96913365 -87375297 - MIR SINE MIR -3 259 204 905 141 283 0 chr4 96913365 96913549 -87375113 - MER46A DNA MER2_type 0 236 1 896 266 48 4 chr4 96913549 96913737 -87374925 - MIR SINE MIR -58 204 1 192 97 0 0 chr4 96914275 96914306 -87374356 + (CA)n Simple_repeat Simple_repeat 2 32 0 24 67 0 0 chr4 96914828 96914873 -87373789 + AT_rich Low_complexity Low_complexity 1 45 0 637 311 25 20 chr4 96916389 96916633 -87372029 - MIR SINE MIR -15 247 3 24 0 0 0 chr4 96917571 96917595 -87371067 + AT_rich Low_complexity Low_complexity 1 24 0 2214 102 10 0 chr4 96917848 96918142 -87370520 + AluSg1 SINE Alu 1 297 -12 2395 97 0 0 chr4 96918213 96918522 -87370140 - AluY SINE Alu -2 309 1 257 363 12 0 chr4 96919482 96919562 -87369100 - L2 LINE L2 -218 3054 2974 2437 81 0 3 chr4 96921375 96921682 -87366980 - AluSc SINE Alu -3 306 1 261 310 60 10 chr4 96921766 96921866 -87366796 + L2 LINE L2 3168 3272 0 21 71 0 0 chr4 96922322 96922364 -87366298 + AT_rich Low_complexity Low_complexity 1 42 0 432 250 265 20 chr4 96922476 96922676 -87365986 - MIR SINE MIR -6 256 8 2230 96 36 0 chr4 96922964 96923266 -87365396 + AluSp SINE Alu 1 313 0 207 0 0 0 chr4 96924431 96924454 -87364208 + (A)n Simple_repeat Simple_repeat 1 23 0 214 265 143 31 chr4 96925495 96925593 -87363069 - MIR SINE MIR -117 145 37 * 583 213 23 52 chr4 96925587 96925761 -87362901 - MIR SINE MIR -66 196 28 229 382 20 0 chr4 96926890 96926992 -87361670 + MIR3 SINE MIR 89 192 -16 1804 169 17 39 chr4 96927527 96927882 -87360780 + MER7A DNA MER2_type 1 345 -1 2118 106 3 0 chr4 96928522 96928815 -87359847 + AluSx SINE Alu 1 294 -18 2154 101 0 0 chr4 96928815 96929092 -87359570 + AluSg1 SINE Alu 1 277 -32 288 0 0 0 chr4 96929093 96929125 -87359537 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 306 258 9 94 chr4 96929447 96929591 -87359071 + LTR33A LTR ERVL 60 162 -361 627 180 0 16 chr4 96930523 96930645 -87358017 - FRAM SINE Alu -2 174 55 722 282 52 55 chr4 96930647 96930994 -87357668 + L2 LINE L2 2960 3305 -8 185 354 38 13 chr4 96931558 96931637 -87357025 - L3 LINE CR1 -26 1551 1471 1715 292 103 31 chr4 96933985 96935269 -87353393 - L2 LINE L2 -13 3300 1921 237 223 143 36 chr4 96937365 96937477 -87351185 - L2 LINE L2 0 3313 3190 370 341 83 7 chr4 96937736 96937897 -87350765 + MER5B DNA MER1_type 6 188 -1 568 231 143 37 chr4 96938012 96938228 -87350434 - MIR SINE MIR -2 260 22 307 344 91 16 chr4 96938328 96938514 -87350148 + L2 LINE L2 3112 3311 -2 226 314 105 9 chr4 96938798 96938903 -87349759 + MIR SINE MIR 37 151 -57 187 318 0 16 chr4 96938924 96938987 -87349675 + L2 LINE L2 3234 3295 -18 1627 188 0 14 chr4 96940325 96940636 -87348026 + AluJo SINE Alu 5 312 0 478 199 298 0 chr4 96941356 96941517 -87347145 - MIR SINE MIR -23 239 31 333 234 0 25 chr4 96941944 96942033 -87346629 - MIR SINE MIR -65 143 56 234 311 143 6 chr4 96942979 96943140 -87345522 + MIR3 SINE MIR 17 199 -9 219 260 68 27 chr4 96943874 96943947 -87344715 - MIR3 SINE MIR -11 197 122 22 88 0 0 chr4 96944228 96944285 -87344377 + AT_rich Low_complexity Low_complexity 1 57 0 224 312 96 45 chr4 96944546 96944703 -87343959 - MIR SINE MIR -2 260 96 24 53 0 0 chr4 96946264 96946302 -87342360 + AT_rich Low_complexity Low_complexity 1 38 0 494 280 0 0 chr4 96946706 96946838 -87341824 - MER94 DNA DNA 0 134 3 1511 154 26 82 chr4 96947305 96947636 -87341026 + AluJo SINE Alu 1 314 0 26 50 0 0 chr4 96947647 96947687 -87340975 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr4 96947767 96947788 -87340874 + AT_rich Low_complexity Low_complexity 1 21 0 271 341 57 81 chr4 96948737 96948983 -87339679 - L2 LINE L2 -15 3257 3018 2129 130 48 22 chr4 96949254 96949609 -87339053 + THE1B LTR MaLR 1 364 0 868 324 84 13 chr4 96949639 96950019 -87338643 - MLT1J LTR MaLR -35 476 70 1325 188 40 3 chr4 96950944 96951247 -87337415 + MER33 DNA MER1_type 6 319 -5 286 294 127 24 chr4 96951248 96951374 -87337288 + MIR SINE MIR 124 262 0 188 146 24 24 chr4 96952295 96952336 -87336326 + MIR SINE MIR 19 59 -203 369 313 117 10 chr4 96952348 96952533 -87336129 + MIR SINE MIR 20 231 -31 207 365 19 0 chr4 96953556 96953663 -87334999 - MIR SINE MIR -112 150 42 21 0 0 0 chr4 96954070 96954091 -87334571 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 96955453 96955474 -87333188 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 96955525 96955555 -87333107 + AT_rich Low_complexity Low_complexity 1 30 0 636 296 32 0 chr4 96956055 96956241 -87332421 + MIR SINE MIR 37 228 -34 29 0 0 0 chr4 96957365 96957394 -87331268 + AT_rich Low_complexity Low_complexity 1 29 0 255 336 44 22 chr4 96957540 96957643 -87331019 + MIR SINE MIR 1 109 -153 921 201 27 0 chr4 96957643 96957827 -87330835 + MER5A DNA MER1_type 1 189 0 255 336 44 22 chr4 96957827 96957860 -87330802 + MIR SINE MIR 109 140 -122 2122 137 0 0 chr4 96961120 96961419 -87327243 - AluSx SINE Alu -13 299 1 23 0 0 0 chr4 96961520 96961543 -87327119 + AT_rich Low_complexity Low_complexity 1 23 0 2061 109 20 0 chr4 96961543 96961836 -87326826 + AluSq SINE Alu 1 299 -14 951 147 26 37 chr4 96961901 96962092 -87326570 - MER5A DNA MER1_type 0 189 1 469 253 79 28 chr4 96963993 96964171 -87324491 + MIR SINE MIR 12 198 -64 210 292 0 0 chr4 96964176 96964224 -87324438 - MIR SINE MIR 0 262 215 325 282 46 56 chr4 96964286 96964458 -87324204 - MIR SINE MIR -39 169 3 210 318 0 0 chr4 96966964 96967027 -87321635 - MER5B DNA MER1_type 0 178 116 331 323 23 15 chr4 96967312 96967442 -87321220 - MIR3 SINE MIR -48 160 30 1046 220 40 20 chr4 96967467 96967771 -87320891 + MER33 DNA MER1_type 12 321 -3 540 256 73 30 chr4 96967885 96968049 -87320613 - MER5B DNA MER1_type -7 171 1 28 29 0 0 chr4 96968734 96968769 -87319893 + AT_rich Low_complexity Low_complexity 1 35 0 2063 100 0 4 chr4 96969767 96970070 -87318592 + AluSc SINE Alu 1 302 0 202 224 0 0 chr4 96970168 96970217 -87318445 + (TA)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chr4 96970513 96970535 -87318127 + AT_rich Low_complexity Low_complexity 1 22 0 1610 136 0 114 chr4 96970535 96970859 -87317803 - AluJo SINE Alu -15 287 1 2401 75 0 0 chr4 96970907 96971212 -87317450 + AluY SINE Alu 1 305 -6 27 87 0 0 chr4 96971347 96971416 -87317246 + AT_rich Low_complexity Low_complexity 1 69 0 34 0 0 0 chr4 96971864 96971898 -87316764 + AT_rich Low_complexity Low_complexity 1 34 0 2061 110 13 0 chr4 96974099 96974399 -87314263 + AluSx SINE Alu 1 304 -8 24 0 0 0 chr4 96976413 96976437 -87312225 + AT_rich Low_complexity Low_complexity 1 24 0 354 317 196 27 chr4 96976890 96977114 -87311548 + MIR SINE MIR 1 262 0 217 305 34 0 chr4 96977425 96977484 -87311178 - MIR3 SINE MIR -38 170 110 200 333 0 0 chr4 96977525 96977585 -87311077 + MIR SINE MIR 184 243 -19 540 297 55 6 chr4 96977592 96977774 -87310888 - MIR SINE MIR -66 196 6 208 294 18 64 chr4 96977789 96977898 -87310764 - MIR3 SINE MIR -102 106 3 404 294 68 12 chr4 96978458 96978621 -87310041 + MIR SINE MIR 73 244 -18 2236 109 14 14 chr4 96978845 96979194 -87309468 + L1PA11 LINE L1 5824 6172 -2 458 319 49 35 chr4 96980157 96980383 -87308279 - MIR SINE MIR -31 231 3 632 251 150 24 chr4 96980745 96980893 -87307769 + MIR SINE MIR 29 212 -50 180 0 0 0 chr4 96980893 96980913 -87307749 + (TAA)n Simple_repeat Simple_repeat 1 20 0 632 251 150 24 chr4 96980913 96980971 -87307691 + MIR SINE MIR 212 261 -1 34 24 0 0 chr4 96981692 96981733 -87306929 + AT_rich Low_complexity Low_complexity 1 41 0 1405 207 62 0 chr4 96983084 96983252 -87305410 - AluJb SINE Alu -4 308 113 218 32 32 0 chr4 96983252 96983283 -87305379 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1405 207 62 0 chr4 96983283 96983404 -87305258 - AluJb SINE Alu -199 113 1 473 310 86 11 chr4 96983773 96983940 -87304722 - MIR SINE MIR -67 141 9 305 320 0 3 chr4 96984089 96984192 -87304470 + MIR SINE MIR 58 157 -63 210 203 62 47 chr4 96984361 96984425 -87304237 + MER91A DNA MER1_type 16 80 -116 245 265 15 29 chr4 96985550 96985618 -87303044 - L2 LINE L2 -1 3271 3205 195 42 0 0 chr4 96988121 96988145 -87300517 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 211 353 39 20 chr4 96989965 96990067 -87298595 - MIR SINE MIR -84 124 21 624 197 15 15 chr4 96990659 96990791 -87297871 + MER94 DNA DNA 3 134 0 1037 275 121 42 chr4 96991362 96991913 -87296749 + L2 LINE L2 2721 3313 0 354 45 0 0 chr4 96993662 96993706 -87294956 + (CATA)n Simple_repeat Simple_repeat 3 46 0 2742 107 20 29 chr4 96994117 96994567 -87294095 - L1PA15 LINE L1 -1 6164 5719 35 0 0 0 chr4 96994947 96994982 -87293680 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr4 96996884 96996926 -87291736 + AT_rich Low_complexity Low_complexity 1 42 0 324 185 0 15 chr4 96997015 96997144 -87291518 + AluJ/FRAM SINE Alu 219 346 0 545 252 149 37 chr4 96997550 96997792 -87290870 + Charlie2 DNA MER1_type 40 308 -2474 578 208 57 19 chr4 96997989 96998148 -87290514 + Charlie2a DNA MER1_type 1482 1646 -1216 380 236 8 89 chr4 96999799 96999922 -87288740 + MER81 DNA DNA 1 113 -1 4948 124 49 29 chr4 97000294 97001154 -87287508 - L1PA13 LINE L1 0 6163 5287 243 61 0 0 chr4 97001981 97002014 -87286648 + (CA)n Simple_repeat Simple_repeat 2 34 0 292 308 93 19 chr4 97002106 97002213 -87286449 + L2 LINE L2 3141 3255 -17 682 332 130 23 chr4 97002565 97003149 -87285513 - L2 LINE L2 -40 3273 2631 392 298 167 6 chr4 97003427 97003595 -87285067 + MIR SINE MIR 54 248 -14 232 338 14 14 chr4 97004212 97004286 -87284376 + L2 LINE L2 3139 3212 -60 534 264 126 6 chr4 97004476 97004650 -87284012 + LTR16A LTR ERVL 238 432 -18 23 54 0 0 chr4 97004961 97004998 -87283664 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr4 97007287 97007309 -87281353 + AT_rich Low_complexity Low_complexity 1 22 0 1449 173 122 0 chr4 97007449 97007727 -87280935 - AluJo SINE Alu 0 312 1 205 139 0 0 chr4 97007994 97008030 -87280632 + L2 LINE L2 3277 3312 -1 24 0 0 0 chr4 97008078 97008102 -87280560 + AT_rich Low_complexity Low_complexity 1 24 0 289 274 120 26 chr4 97008131 97008248 -87280414 - MIR SINE MIR 0 262 135 198 319 223 0 chr4 97008295 97008389 -87280273 - MIR SINE MIR -136 126 12 1553 148 37 19 chr4 97009210 97009480 -87279182 + AluJo SINE Alu 1 275 -37 1629 192 39 9 chr4 97009970 97010304 -87278358 - MER2 DNA MER2_type 0 344 1 337 343 42 6 chr4 97010308 97010468 -87278194 + MIR3 SINE MIR 15 184 -24 234 185 62 74 chr4 97013226 97013307 -87275355 - L1MC4 LINE L1 -1349 6693 6614 2011 124 7 0 chr4 97013712 97014002 -87274660 - AluSx SINE Alu 0 312 21 330 265 66 33 chr4 97014222 97014373 -87274289 - LTR33A LTR ERVL 0 523 368 235 301 189 13 chr4 97014609 97014762 -87273900 + MIR3 SINE MIR 20 199 -9 21 36 0 0 chr4 97015032 97015060 -87273602 + AT_rich Low_complexity Low_complexity 1 28 0 2697 32 0 0 chr4 97015439 97015752 -87272910 + AluYb8 SINE Alu 1 313 -5 31 44 0 0 chr4 97015881 97015926 -87272736 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr4 97016395 97016418 -87272244 + AT_rich Low_complexity Low_complexity 1 23 0 199 379 39 0 chr4 97016682 97016785 -87271877 - MIR3 SINE MIR -14 194 88 302 247 82 59 chr4 97016825 97016995 -87271667 + MIR SINE MIR 28 201 -61 27 0 0 0 chr4 97018256 97018283 -87270379 + AT_rich Low_complexity Low_complexity 1 27 0 443 319 88 0 chr4 97018638 97018798 -87269864 - MIR SINE MIR -88 174 1 22 35 0 0 chr4 97021106 97021135 -87267527 + AT_rich Low_complexity Low_complexity 1 29 0 186 43 0 0 chr4 97021596 97021619 -87267043 + (A)n Simple_repeat Simple_repeat 1 23 0 36 53 0 0 chr4 97022104 97022161 -87266501 + AT_rich Low_complexity Low_complexity 1 57 0 344 335 60 30 chr4 97023373 97023573 -87265089 - MIR SINE MIR -6 256 51 250 224 0 0 chr4 97023608 97023657 -87265005 + MIR SINE MIR 81 129 -79 22 0 0 0 chr4 97024048 97024070 -87264592 + AT_rich Low_complexity Low_complexity 1 22 0 325 257 37 37 chr4 97024070 97024179 -87264483 + MIR SINE MIR 154 262 0 508 333 73 0 chr4 97027597 97027789 -87260873 - MIR SINE MIR -1 261 56 24 85 0 0 chr4 97028919 97028978 -87259684 + AT_rich Low_complexity Low_complexity 1 59 0 423 283 40 46 chr4 97029077 97029250 -87259412 - MIR3 SINE MIR -19 189 18 487 312 0 16 chr4 97029801 97029926 -87258736 + MER5B DNA MER1_type 1 123 -55 422 320 64 75 chr4 97030217 97030498 -87258164 - L3 LINE CR1 -950 627 350 201 273 0 0 chr4 97030996 97031051 -87257611 + A-rich Low_complexity Low_complexity 1 55 0 1437 172 41 4 chr4 97031689 97031957 -87256705 - AluJo SINE Alu -34 278 1 21 0 0 0 chr4 97032652 97032673 -87255989 + AT_rich Low_complexity Low_complexity 1 21 0 248 385 148 7 chr4 97033904 97034039 -87254623 - L2 LINE L2 -9 3263 3110 1124 202 0 5 chr4 97034524 97034727 -87253935 + AluJo SINE Alu 88 289 -23 317 262 107 19 chr4 97036073 97036102 -87252560 + L2 LINE L2 3193 3218 -95 414 0 0 0 chr4 97036102 97036148 -87252514 + (TG)n Simple_repeat Simple_repeat 2 47 0 317 262 107 19 chr4 97036148 97036221 -87252441 + L2 LINE L2 3218 3304 -9 406 121 289 12 chr4 97037504 97037587 -87251075 - FRAM SINE Alu -17 149 44 283 296 177 15 chr4 97038736 97038939 -87249723 - MIR SINE MIR 0 262 27 581 187 106 0 chr4 97039164 97039287 -87249375 + MIR SINE MIR 102 237 -25 24 32 0 0 chr4 97039811 97039842 -87248820 + AT_rich Low_complexity Low_complexity 1 31 0 1909 94 0 110 chr4 97039843 97040171 -87248491 - AluSg1 SINE Alu -17 292 1 24 67 0 0 chr4 97040448 97040493 -87248169 + AT_rich Low_complexity Low_complexity 1 45 0 2043 112 7 26 chr4 97040570 97040875 -87247787 + AluSx SINE Alu 1 299 -13 186 379 43 50 chr4 97041625 97041905 -87246757 + L2 LINE L2 2819 3096 -176 1655 179 13 7 chr4 97042345 97042741 -87245921 - AluJo SINE Alu 0 398 1 25 31 0 0 chr4 97042937 97042969 -87245693 + AT_rich Low_complexity Low_complexity 1 32 0 3162 167 38 57 chr4 97043252 97043966 -87244696 - L1MC2 LINE L1 -13 6331 5632 198 179 26 0 chr4 97044282 97044321 -87244341 - L2 LINE L2 -10 3303 3264 225 0 0 0 chr4 97044669 97044694 -87243968 + (A)n Simple_repeat Simple_repeat 1 25 0 906 286 200 16 chr4 97046576 97046961 -87241701 - L2 LINE L2 -5 3308 2853 * 1946 282 99 30 chr4 97046952 97047086 -87241576 - L2 LINE L2 -940 2374 2251 2243 108 0 0 chr4 97047086 97047383 -87241279 + AluSx SINE Alu 3 299 -13 1946 282 99 30 chr4 97047383 97048018 -87240644 - L2 LINE L2 -1063 2251 1552 811 198 6 18 chr4 97050483 97050650 -87238012 - MER3 DNA MER1_type -41 168 4 367 261 27 36 chr4 97050895 97051006 -87237656 - MIR3 SINE MIR -3 205 96 546 16 0 0 chr4 97052138 97052201 -87236461 + (TG)n Simple_repeat Simple_repeat 2 64 0 1792 150 30 35 chr4 97052506 97052845 -87235817 - MER1B DNA MER1_type 0 337 1 196 158 35 0 chr4 97055068 97055125 -87233537 + G-rich Low_complexity Low_complexity 3 61 0 183 129 0 0 chr4 97055401 97055432 -87233230 + (CA)n Simple_repeat Simple_repeat 2 32 0 326 259 213 43 chr4 97055645 97055950 -87232712 - L1ME4a LINE L1 -11 6110 5754 411 21 0 0 chr4 97056417 97056465 -87232197 + (TG)n Simple_repeat Simple_repeat 2 49 0 520 261 98 20 chr4 97057081 97057284 -87231378 - L2 LINE L2 -1 3312 3094 272 348 119 27 chr4 97057406 97057699 -87230963 + MLT1K LTR MaLR 183 502 -86 247 192 0 19 chr4 97057849 97057901 -87230761 + MLT1K LTR MaLR 526 576 -12 1369 178 9 4 chr4 97058398 97058628 -87230034 + AluJb SINE Alu 1 231 -81 450 0 0 0 chr4 97058633 97058683 -87229979 + (CA)n Simple_repeat Simple_repeat 2 51 0 216 320 58 39 chr4 97060220 97060323 -87228339 + MIR SINE MIR 22 126 -82 911 189 47 0 chr4 97061219 97061388 -87227274 - MER20 DNA MER1_type 0 219 43 30 0 0 0 chr4 97061416 97061446 -87227216 + AT_rich Low_complexity Low_complexity 1 30 0 2910 9 0 0 chr4 97061571 97061887 -87226775 + AluYb8 SINE Alu 1 316 -2 198 0 0 0 chr4 97064891 97064913 -87223749 + (TA)n Simple_repeat Simple_repeat 2 23 0 2356 130 27 123 chr4 97064915 97065393 -87223269 + Tigger2 DNA MER2_type 1 2716 -2 405 0 0 0 chr4 97065393 97065438 -87223224 + (TG)n Simple_repeat Simple_repeat 2 46 0 684 157 19 0 chr4 97065441 97065549 -87223113 - Tigger3(Golem) DNA MER2_type -1 3028 2919 883 132 0 22 chr4 97065668 97065804 -87222858 - FLAM_C SINE Alu 0 133 1 625 181 121 0 chr4 97065942 97066058 -87222604 - FLAM_A SINE Alu -3 130 1 472 167 13 0 chr4 97066067 97066145 -87222517 - Tigger3(Golem) DNA MER2_type -2950 79 1 197 337 116 0 chr4 97066451 97066537 -87222125 - L2 LINE L2 -3 3269 3174 21 36 0 0 chr4 97067025 97067053 -87221609 + AT_rich Low_complexity Low_complexity 1 28 0 1756 150 11 11 chr4 97067064 97067344 -87221318 + AluSx SINE Alu 1 280 -32 248 101 79 0 chr4 97067957 97068046 -87220616 + (TA)n Simple_repeat Simple_repeat 1 96 0 2169 112 3 3 chr4 97068047 97068342 -87220320 - AluSg SINE Alu -15 295 1 35 0 0 0 chr4 97068366 97068401 -87220261 + AT_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chr4 97068432 97068476 -87220186 + AT_rich Low_complexity Low_complexity 1 44 0 301 288 144 0 chr4 97068772 97068897 -87219765 + MIR3 SINE MIR 55 197 -11 1046 93 7 0 chr4 97069085 97069224 -87219438 - AluSp/q SINE Alu -16 297 158 239 226 105 40 chr4 97069988 97070112 -87218550 - L1ME LINE L1 -213 5908 5777 1441 175 89 0 chr4 97075008 97075277 -87213385 - AluJo SINE Alu -19 293 1 1124 187 5 5 chr4 97075482 97075709 -87212953 + AluJb SINE Alu 88 314 0 1344 188 28 0 chr4 97076970 97077220 -87211442 + AluJo SINE Alu 21 277 -35 410 318 46 12 chr4 97077797 97077970 -87210692 - MIR SINE MIR -6 256 78 1821 154 0 0 chr4 97078050 97078317 -87210345 + AluSx SINE Alu 1 267 -45 283 282 13 0 chr4 97078568 97078646 -87210016 - MIR SINE MIR -1 261 183 300 237 0 13 chr4 97078823 97078899 -87209763 - Tigger5 DNA MER2_type 0 2323 2249 26 30 0 0 chr4 97078961 97078994 -87209668 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr4 97079035 97079059 -87209603 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr4 97079161 97079184 -87209478 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr4 97079250 97079280 -87209382 + AT_rich Low_complexity Low_complexity 1 30 0 699 226 0 0 chr4 97079746 97079879 -87208783 - FLAM_C SINE Alu 0 133 1 2139 60 4 4 chr4 97080878 97081145 -87207517 + AluY SINE Alu 44 310 -1 1790 209 29 6 chr4 97081563 97081912 -87206750 + MLT1A1 LTR MaLR 9 365 0 353 256 11 11 chr4 97081920 97082010 -87206652 - MIR SINE MIR -117 145 56 584 265 31 25 chr4 97082160 97082322 -87206340 - MLT1J LTR MaLR -1 510 348 1152 118 51 0 chr4 97082325 97082503 -87206159 + MER107 DNA MER1_type 1 187 -10 746 279 125 22 chr4 97082496 97082808 -87205854 - MLT1J LTR MaLR -167 344 1 * 363 23 0 0 chr4 97083806 97083850 -87204812 + (CA)n Simple_repeat Simple_repeat 2 45 0 659 316 45 16 chr4 97084330 97084574 -87204088 + MIR SINE MIR 12 262 0 21 0 0 0 chr4 97085584 97085605 -87203057 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 97085973 97085994 -87202668 + AT_rich Low_complexity Low_complexity 1 21 0 221 250 0 0 chr4 97086690 97086734 -87201928 + (CA)n Simple_repeat Simple_repeat 1 44 0 273 119 0 0 chr4 97087005 97087047 -87201615 + (TATG)n Simple_repeat Simple_repeat 3 44 0 189 74 0 0 chr4 97087046 97087073 -87201589 + (CA)n Simple_repeat Simple_repeat 2 28 0 * 819 194 176 73 chr4 97088755 97088959 -87199703 + MLT1A1 LTR MaLR 2 254 -111 2184 109 3 7 chr4 97088959 97089261 -87199401 - AluSx SINE Alu -11 301 1 819 194 176 73 chr4 97089261 97089386 -87199276 + MLT1A1 LTR MaLR 254 365 0 198 320 48 29 chr4 97089605 97089708 -87198954 + MIR3 SINE MIR 104 208 0 791 224 38 68 chr4 97090239 97090382 -87198280 - MIR SINE MIR -1 261 115 1869 108 37 15 chr4 97090382 97090650 -87198012 + AluSx SINE Alu 1 274 -38 871 68 14 27 chr4 97090652 97090800 -87197862 + (GGAA)n Simple_repeat Simple_repeat 3 148 0 791 224 38 68 chr4 97090800 97090890 -87197772 - MIR SINE MIR -148 114 32 207 291 25 63 chr4 97091536 97091615 -87197047 - MER5B DNA MER1_type -16 162 87 385 290 28 0 chr4 97091641 97091748 -87196914 - MER5B DNA MER1_type -58 120 11 557 239 194 13 chr4 97091775 97091930 -87196732 - MER5A DNA MER1_type -6 183 1 334 312 21 0 chr4 97092080 97092173 -87196489 + MIR SINE MIR 165 259 -3 1698 148 11 4 chr4 97092430 97092693 -87195969 + AluSx SINE Alu 25 289 -23 276 336 82 8 chr4 97092821 97092955 -87195707 + MIR SINE MIR 48 191 -71 10857 140 49 15 chr4 97095125 97096996 -87191666 + Tigger1 DNA MER2_type 1 1935 -483 1331 156 21 25 chr4 97097006 97097244 -87191418 + Tigger1 DNA MER2_type 2182 2418 0 288 255 53 21 chr4 97097728 97097822 -87190840 + MIR SINE MIR 11 107 -155 244 309 134 10 chr4 97097980 97098077 -87190585 - L2 LINE L2 -37 3235 3127 205 338 25 70 chr4 97098482 97098639 -87190023 - L2 LINE L2 -591 2723 2574 190 306 131 59 chr4 97098742 97098964 -87189698 - L2 LINE L2 -1023 2291 2054 307 266 85 40 chr4 97099193 97099441 -87189221 - MIR SINE MIR -3 259 1 302 343 14 41 chr4 97099441 97099587 -87189075 + L3 LINE CR1 1436 1577 0 1761 152 9 73 chr4 97099647 97099976 -87188686 - AluJo SINE Alu -4 308 1 213 320 77 0 chr4 97100091 97100169 -87188493 + L2 LINE L2 3189 3272 0 2084 129 3 0 chr4 97100689 97100984 -87187678 - AluSq SINE Alu -17 296 1 648 342 106 16 chr4 97102399 97102473 -87186189 + L3 LINE CR1 1095 1161 -416 2097 118 0 53 chr4 97102473 97102794 -87185868 + AluSq SINE Alu 1 304 -9 648 342 106 16 chr4 97102794 97102839 -87185823 + L3 LINE CR1 1161 1201 -376 2225 109 10 10 chr4 97102839 97103151 -87185511 + AluSx SINE Alu 1 312 0 648 342 106 16 chr4 97103151 97103463 -87185199 + L3 LINE CR1 1201 1566 -11 181 286 0 0 chr4 97103576 97103618 -87185044 + MIR3 SINE MIR 161 202 -6 444 269 155 30 chr4 97103645 97104006 -87184656 - L3b LINE CR1 -76 1507 1102 329 343 66 73 chr4 97105006 97105280 -87183382 - L2 LINE L2 -1 3271 3000 194 320 13 13 chr4 97106238 97106313 -87182349 - L2 LINE L2 0 3272 3198 518 157 294 0 chr4 97107764 97107866 -87180796 - FLAM_C SINE Alu -1 132 1 25 0 0 0 chr4 97112648 97112673 -87175989 + GC_rich Low_complexity Low_complexity 1 25 0 219 88 0 0 chr4 97112736 97112770 -87175892 + (AGGGGG)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr4 97113110 97113131 -87175531 + GC_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr4 97113430 97113457 -87175205 + (CCG)n Simple_repeat Simple_repeat 3 29 0 224 214 18 0 chr4 97113526 97113582 -87175080 + (CCG)n Simple_repeat Simple_repeat 1 57 0 415 256 78 126 chr4 97113823 97114299 -87174363 + L1M2 LINE L1 662 1114 -5735 315 0 0 0 chr4 97115524 97115559 -87173103 + (CA)n Simple_repeat Simple_repeat 2 36 0 185 222 77 128 chr4 97115863 97115980 -87172682 - L2 LINE L2 -4 3309 3199 2199 157 3 3 chr4 97116707 97117044 -87171618 - MER1B DNA MER1_type 0 337 1 23 0 0 0 chr4 97118152 97118175 -87170487 + AT_rich Low_complexity Low_complexity 1 23 0 2294 121 0 0 chr4 97118291 97118596 -87170066 + AluSg SINE Alu 1 305 -5 274 261 11 65 chr4 97119164 97119256 -87169406 + L2 LINE L2 3223 3309 -4 423 0 0 0 chr4 97119370 97119417 -87169245 + (CA)n Simple_repeat Simple_repeat 2 48 0 2108 139 3 0 chr4 97120027 97120321 -87168341 + AluSx SINE Alu 1 295 -17 1822 284 133 39 chr4 97120328 97120463 -87168199 - L2 LINE L2 -18 3295 3174 207 0 0 0 chr4 97120463 97120486 -87168176 + (CA)n Simple_repeat Simple_repeat 2 24 0 1822 284 133 39 chr4 97120486 97120570 -87168092 - L2 LINE L2 -139 3174 3099 1797 191 12 3 chr4 97120570 97120910 -87167752 - MER2 DNA MER2_type -1 343 1 1822 284 133 39 chr4 97120910 97121957 -87166705 - L2 LINE L2 -214 3099 1884 468 271 57 61 chr4 97121970 97122217 -87166445 + L2 LINE L2 3059 3304 -9 311 271 65 52 chr4 97123763 97123918 -87164744 - MLT1I LTR MaLR -243 166 10 180 111 0 0 chr4 97124045 97124072 -87164590 + (CA)n Simple_repeat Simple_repeat 2 28 0 24 32 0 0 chr4 97124083 97124114 -87164548 + AT_rich Low_complexity Low_complexity 1 31 0 579 304 98 21 chr4 97124232 97124669 -87163993 - LTR16C LTR ERVL -18 473 3 4034 124 3 0 chr4 97125545 97126152 -87162510 + L1MC1 LINE L1 5711 6319 -14 278 278 14 0 chr4 97126393 97126465 -87162197 + Charlie2a DNA MER1_type 248 320 -2462 581 205 32 37 chr4 97126654 97126844 -87161818 + Charlie2a DNA MER1_type 1467 1655 -1207 723 226 71 22 chr4 97127367 97127593 -87161069 - LTR16A1 LTR ERVL -26 431 195 2413 86 0 6 chr4 97127768 97128082 -87160580 + AluSp SINE Alu 1 312 -1 198 429 0 10 chr4 97128109 97128207 -87160455 - MIR SINE MIR -73 135 39 334 321 68 0 chr4 97128338 97128500 -87160162 + MIR SINE MIR 84 256 -6 1230 187 0 0 chr4 97128570 97128779 -87159883 + AluSg/x SINE Alu 102 310 0 323 196 34 135 chr4 97128780 97128928 -87159734 - L1ME3A LINE L1 -124 6046 5914 1543 169 99 7 chr4 97128950 97129234 -87159428 + AluJb SINE Alu 3 312 0 40 21 0 0 chr4 97129341 97129388 -87159274 + AT_rich Low_complexity Low_complexity 1 47 0 999 299 67 14 chr4 97129436 97130474 -87158188 - L1ME3A LINE L1 -410 5760 4674 1045 123 60 86 chr4 97130506 97130775 -87157887 + L1MA4 LINE L1 6028 6289 -11 24 0 0 0 chr4 97130776 97130800 -87157862 + AT_rich Low_complexity Low_complexity 1 24 0 336 271 139 7 chr4 97130805 97130949 -87157713 - L1ME3A LINE L1 -1527 4619 4457 2666 104 3 3 chr4 97130965 97131340 -87157322 + THE1C LTR MaLR 1 375 0 21 71 0 0 chr4 97131649 97131691 -87156971 + AT_rich Low_complexity Low_complexity 1 42 0 379 299 90 14 chr4 97131691 97132099 -87156563 - L1ME3A LINE L1 -223 5947 5511 413 289 0 35 chr4 97132126 97132323 -87156339 + L1M4 LINE L1 2497 2686 -3460 983 281 100 16 chr4 97132456 97132910 -87155752 + MLT2E LTR ERVL 10 549 -79 1359 199 87 51 chr4 97133319 97133395 -87155267 + L1MCa LINE L1 1 73 -6353 2177 81 39 26 chr4 97133395 97133702 -87154960 + AluY SINE Alu 1 311 0 1359 199 87 51 chr4 97133702 97134016 -87154646 + L1MCa LINE L1 73 405 -6021 3993 195 60 30 chr4 97134019 97134618 -87154044 + L1MCa LINE L1 486 1066 -5360 1804 194 0 25 chr4 97134618 97134938 -87153724 + AluJo SINE Alu 1 312 0 3993 195 60 30 chr4 97134938 97137009 -87151653 + L1MCa LINE L1 1066 3321 -3105 1053 138 12 100 chr4 97137009 97137249 -87151413 + AluJo SINE Alu 85 303 -9 471 135 10 0 chr4 97137262 97137366 -87151296 + L1MCa LINE L1 3414 3518 -2908 272 188 0 0 chr4 97137369 97137417 -87151245 + L1M1 LINE L1 1423 1470 -6095 300 158 0 0 chr4 97137431 97137488 -87151174 + CT-rich Low_complexity Low_complexity 2 58 0 1967 118 9 50 chr4 97137488 97137810 -87150852 - AluSx SINE Alu -1 311 3 7919 142 14 4 chr4 97137842 97138343 -87150319 - L1MA1 LINE L1 -10 6292 5798 288 0 0 0 chr4 97138343 97138375 -87150287 + (TG)n Simple_repeat Simple_repeat 2 33 0 7919 142 14 4 chr4 97138375 97140363 -87148299 - L1MA1 LINE L1 -504 5798 3776 9366 139 22 9 chr4 97140401 97140694 -87147968 + L1M1 LINE L1 1461 1749 -5816 489 17 0 0 chr4 97140694 97140752 -87147910 + (CA)n Simple_repeat Simple_repeat 2 59 0 9366 139 22 9 chr4 97140752 97142070 -87146592 + L1M1 LINE L1 1749 3094 -4471 2076 127 3 10 chr4 97142215 97142529 -87146133 + AluSx SINE Alu 1 312 0 568 300 58 13 chr4 97142534 97142981 -87145681 + L1ME3A LINE L1 4643 5109 -1037 669 333 62 6 chr4 97143059 97143579 -87145083 + L1ME3A LINE L1 5295 5843 -327 9427 206 18 16 chr4 97144336 97145483 -87143179 - L1PA16 LINE L1 0 6166 5023 1760 194 0 0 chr4 97145483 97145790 -87142872 - AluJb SINE Alu 0 307 1 9427 206 18 16 chr4 97145790 97147557 -87141105 - L1PA16 LINE L1 -1143 5023 3234 2330 74 7 0 chr4 97147557 97147866 -87140796 - AluY SINE Alu 0 311 1 9427 206 18 16 chr4 97147866 97148366 -87140296 - L1PA16 LINE L1 -2932 3234 2737 521 279 24 94 chr4 97148395 97148682 -87139980 - L1MEd LINE L1 -2000 4129 3863 694 313 129 15 chr4 97148764 97149243 -87139419 - L1MEd LINE L1 -3393 2736 2203 228 261 0 43 chr4 97149332 97149424 -87139238 + T-rich Low_complexity Low_complexity 6 93 0 1603 79 5 0 chr4 97149545 97149761 -87138901 - L1PA7 LINE L1 0 6154 5938 384 292 64 48 chr4 97150109 97150359 -87138303 - L1MEd LINE L1 -4501 1628 1375 2115 70 0 19 chr4 97150375 97150645 -87138017 + AluY SINE Alu 33 297 -14 9610 170 22 21 chr4 97150645 97151109 -87137553 - L1PB1 LINE L1 -6 6861 6399 2062 139 0 3 chr4 97151109 97151403 -87137259 - AluSg SINE Alu -17 293 1 9610 170 22 21 chr4 97151403 97153154 -87135508 - L1PB1 LINE L1 -468 6399 4652 2445 81 0 3 chr4 97153154 97153451 -87135211 - AluY SINE Alu -14 297 2 9610 170 22 21 chr4 97153451 97156676 -87131986 - L1PB1 LINE L1 -2215 4652 1392 741 204 16 11 chr4 97156673 97156864 -87131798 - L1PB1 LINE L1 -6666 197 6 * 5681 164 13 5 chr4 97156968 97158987 -87129675 + L1PB3 LINE L1 4124 6154 0 1003 309 85 48 chr4 97159013 97160121 -87128541 - L1MEd LINE L1 -4870 1249 101 1262 211 36 41 chr4 97160377 97160817 -87127845 - Charlie1 DNA MER1_type -35 2726 2289 264 59 0 0 chr4 97162522 97162556 -87126106 + (TA)n Simple_repeat Simple_repeat 1 34 0 737 211 61 28 chr4 97163363 97163543 -87125119 + MER5A DNA MER1_type 2 187 -2 571 314 6 0 chr4 97164166 97164335 -87124327 + MIR SINE MIR 80 249 -13 2419 87 3 0 chr4 97164459 97164768 -87123894 + AluSp SINE Alu 1 310 -3 2139 148 3 0 chr4 97165113 97165423 -87123239 - AluSx SINE Alu -1 311 1 264 222 0 14 chr4 97165482 97165554 -87123108 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 1295 196 79 42 chr4 97167918 97168301 -87120361 + MLT1B LTR MaLR 1 374 0 5956 75 1 0 chr4 97168301 97169106 -87119556 + L1PA10 LINE L1 5363 6168 0 36 77 0 0 chr4 97169504 97169582 -87119080 + AT_rich Low_complexity Low_complexity 1 78 0 2050 149 0 10 chr4 97169622 97169757 -87118905 + AluSx SINE Alu 1 136 -176 2369 91 0 3 chr4 97169757 97170055 -87118607 + AluY SINE Alu 1 297 -14 2050 149 0 10 chr4 97170055 97170220 -87118442 + AluSx SINE Alu 136 298 -14 27 29 0 0 chr4 97170264 97170298 -87118364 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chr4 97170360 97170384 -87118278 + AT_rich Low_complexity Low_complexity 1 24 0 1803 227 76 16 chr4 97170389 97170878 -87117784 + LTR40a LTR ERVL 1 518 -1 243 0 0 0 chr4 97170881 97170908 -87117754 + (CA)n Simple_repeat Simple_repeat 2 28 0 1564 193 47 0 chr4 97171259 97171386 -87117276 + AluJb SINE Alu 1 121 -191 1858 154 20 0 chr4 97171386 97171679 -87116983 + AluSx SINE Alu 1 299 -13 1564 193 47 0 chr4 97171679 97171847 -87116815 + AluJb SINE Alu 121 310 -2 40472 36 22 1 chr4 97172220 97178248 -87110414 - L1PA2 LINE L1 -3 6152 1 223 256 47 35 chr4 97179215 97179301 -87109361 + MIR SINE MIR 40 126 -136 4574 61 11 2 chr4 97179478 97180104 -87108558 + L1PA7 LINE L1 5325 5956 -198 1505 93 10 0 chr4 97180104 97180298 -87108364 + AluSc SINE Alu 95 290 -19 860 168 103 0 chr4 97181171 97181385 -87107277 + L1MA8 LINE L1 6052 6287 -4 2452 77 0 3 chr4 97181394 97181693 -87106969 + AluY SINE Alu 5 302 -9 1425 170 0 8 chr4 97181809 97182062 -87106600 - L1PB1 LINE L1 -3 6148 5898 813 58 0 0 chr4 97182062 97182163 -87106499 + L1PA2 LINE L1 6051 6154 -1 2130 111 3 10 chr4 97182342 97182639 -87106023 - AluSc SINE Alu -14 295 1 1018 170 65 0 chr4 97183048 97183248 -87105414 + MER2 DNA MER2_type 2 214 -131 1369 169 74 18 chr4 97183250 97183534 -87105128 - MER1B DNA MER1_type -2 337 38 22 0 0 0 chr4 97183748 97183770 -87104892 + AT_rich Low_complexity Low_complexity 1 22 0 252 334 61 25 chr4 97183779 97183902 -87104760 - MIR SINE MIR -66 142 25 769 268 21 24 chr4 97183994 97184272 -87104390 + MLT1H LTR MaLR 1 320 -229 739 273 0 11 chr4 97184681 97184868 -87103794 - MLT1A2 LTR MaLR 0 374 190 1903 138 17 3 chr4 97185109 97185399 -87103263 - AluSx SINE Alu -18 294 1 24 67 0 0 chr4 97185558 97185603 -87103059 + AT_rich Low_complexity Low_complexity 1 45 0 1741 139 30 0 chr4 97185725 97186026 -87102636 - THE1C LTR MaLR 0 375 66 6054 57 10 18 chr4 97186126 97187164 -87101498 - L1P2 LINE L1 -604 5550 4524 3585 77 13 0 chr4 97187301 97188003 -87100659 - L1PA8A LINE L1 -364 5767 5059 3591 110 9 7 chr4 97188003 97188577 -87100085 + L1PA8A LINE L1 4500 5074 -1072 1849 116 0 0 chr4 97189135 97189412 -87099250 + L1PA14 LINE L1 2444 2720 -4861 4822 135 14 5 chr4 97189413 97190796 -87097866 + L1PA14 LINE L1 6022 7414 -185 3409 35 0 0 chr4 97190896 97191299 -87097363 + L1PA3 LINE L1 5753 6155 0 365 88 70 0 chr4 97191299 97191356 -87097306 - Tigger2 DNA MER2_type -2657 61 1 272 236 86 121 chr4 97191534 97191636 -87097026 - MIR SINE MIR -28 234 139 2280 114 0 0 chr4 97191636 97191943 -87096719 + AluY SINE Alu 1 307 -4 272 236 86 121 chr4 97191943 97192014 -87096648 - MIR SINE MIR -123 139 67 558 271 109 6 chr4 97192844 97193165 -87095497 - L1MC4a LINE L1 -1856 5952 5599 23 0 0 0 chr4 97193495 97193518 -87095144 + AT_rich Low_complexity Low_complexity 1 23 0 1428 197 35 62 chr4 97193987 97194358 -87094304 + MLT1A1 LTR MaLR 5 365 0 890 167 0 39 chr4 97194491 97194671 -87093991 - MER49 LTR ERV1 0 923 751 666 172 0 0 chr4 97195522 97195650 -87093012 + GA-rich Low_complexity Low_complexity 3 130 0 1290 170 97 86 chr4 97195747 97196118 -87092544 + THE1C LTR MaLR 1 375 0 6806 181 89 22 chr4 97196422 97197981 -87090681 - MER52A LTR ERV1 0 1755 1 260 233 125 17 chr4 97198119 97198239 -87090423 + L1ME4a LINE L1 5784 5916 -205 205 337 0 0 chr4 97198271 97198354 -87090308 + (CATA)n Simple_repeat Simple_repeat 3 85 0 16653 52 1 1 chr4 97198456 97200671 -87087991 - L1P LINE L1 -1826 4320 2105 9107 146 17 7 chr4 97200696 97202212 -87086450 + L1PA12 LINE L1 903 2434 -5147 393 134 0 52 chr4 97204329 97204426 -87084236 + (TTCC)n Simple_repeat Simple_repeat 3 94 0 195 253 149 23 chr4 97204468 97204555 -87084107 + MIR SINE MIR 116 213 -49 21 0 0 0 chr4 97204737 97204758 -87083904 + AT_rich Low_complexity Low_complexity 1 21 0 228 204 41 51 chr4 97205161 97205259 -87083403 - L1MC5 LINE L1 -54 7907 7811 3187 158 17 12 chr4 97205603 97206197 -87082465 - L1MA4A LINE L1 -11 6292 5696 1012 306 97 10 chr4 97206432 97207115 -87081547 + ERVL LTR ERVL 2656 3454 -2310 204 135 0 0 chr4 97207475 97207512 -87081150 + (TG)n Simple_repeat Simple_repeat 2 38 0 230 311 0 0 chr4 97207556 97207646 -87081016 + L1MC4 LINE L1 6614 6703 -1339 324 279 47 0 chr4 97207670 97207756 -87080906 - L1MC4 LINE L1 -1339 6703 6614 1032 156 0 0 chr4 97207775 97207955 -87080707 + (TA)n Simple_repeat Simple_repeat 1 180 0 1097 297 66 21 chr4 97208222 97208646 -87080016 + ERVL LTR ERVL 4103 4545 -1219 518 306 76 25 chr4 97208681 97209069 -87079593 + ERVL LTR ERVL 4872 5325 -368 7711 99 14 3 chr4 97209135 97210165 -87078497 + THE1B-int LTR MaLR 540 1580 0 2267 107 51 25 chr4 97210165 97210520 -87078142 + THE1B LTR MaLR 1 364 0 3823 92 2 6 chr4 97210520 97211061 -87077601 + THE1B-int LTR MaLR 1 539 -1041 572 215 54 48 chr4 97211637 97211823 -87076839 + LTR33A LTR ERVL 335 521 -2 602 254 56 136 chr4 97212474 97213097 -87075565 - HAL1 LINE L1 -1932 575 3 1761 162 18 0 chr4 97213944 97214222 -87074440 + AluSx SINE Alu 14 296 -16 1052 45 0 0 chr4 97214348 97214481 -87074181 + L1PA4 LINE L1 6023 6155 0 212 0 36 0 chr4 97214517 97214545 -87074117 + (TAAAA)n Simple_repeat Simple_repeat 1 29 0 8018 239 49 25 chr4 97214580 97217946 -87070716 - L1MCa LINE L1 -868 5558 2112 9267 268 34 21 chr4 97217946 97220865 -87067797 + L1PA12 LINE L1 2799 5679 -1905 2193 100 20 3 chr4 97220865 97221166 -87067496 - AluY SINE Alu -5 306 1 9267 268 34 21 chr4 97221166 97221264 -87067398 + L1PA12 LINE L1 5679 5774 -1810 288 53 0 0 chr4 97221264 97221302 -87067360 + (CA)n Simple_repeat Simple_repeat 1 38 0 9267 268 34 21 chr4 97221302 97221524 -87067138 + L1PA12 LINE L1 5774 6084 -1500 1277 275 121 37 chr4 97222422 97223343 -87065319 - HAL1 LINE L1 -11 2496 1499 355 242 75 8 chr4 97223353 97223473 -87065189 - L1MD2 LINE L1 -11 6348 6221 337 258 68 80 chr4 97223476 97223639 -87065023 - HAL1 LINE L1 -1007 1500 1340 1231 208 16 49 chr4 97223821 97224129 -87064533 - AluJo SINE Alu -14 298 1 329 272 59 65 chr4 97224137 97224306 -87064356 - HAL1 LINE L1 -1470 1037 870 216 0 0 0 chr4 97224331 97224355 -87064307 + (T)n Simple_repeat Simple_repeat 1 24 0 27 0 0 0 chr4 97224853 97224880 -87063782 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chr4 97224916 97224953 -87063709 + AT_rich Low_complexity Low_complexity 1 37 0 1645 159 33 74 chr4 97224980 97225371 -87063291 + THE1C LTR MaLR 1 375 0 340 325 102 23 chr4 97225403 97225668 -87062994 - L1M4 LINE L1 -1992 4154 3869 324 69 293 0 chr4 97225678 97225736 -87062926 + MADE1 DNA Mariner 2 76 -4 200 205 0 0 chr4 97227238 97227277 -87061385 + T-rich Low_complexity Low_complexity 2 40 0 288 0 0 0 chr4 97228076 97228108 -87060554 + (TG)n Simple_repeat Simple_repeat 1 32 0 316 294 75 42 chr4 97228309 97228523 -87060139 + HERV16 LTR ERVL 2060 2280 -2716 441 248 83 0 chr4 97228570 97228679 -87059983 - MLT1H LTR MaLR -316 233 116 1358 293 71 17 chr4 97228869 97229666 -87058996 - L1M4 LINE L1 -1451 4695 3826 296 306 87 27 chr4 97230374 97230557 -87058105 - MER117 DNA MER1_type -2 195 2 26 0 0 0 chr4 97230577 97230603 -87058059 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr4 97230698 97230720 -87057942 + AT_rich Low_complexity Low_complexity 1 22 0 561 320 81 54 chr4 97230957 97231285 -87057377 - L2 LINE L2 0 3272 2925 4146 209 36 38 chr4 97231285 97232325 -87056337 - MER45B DNA AcHobo 0 1040 2 561 320 81 54 chr4 97232325 97232586 -87056076 - L2 LINE L2 -347 2925 2673 902 200 40 6 chr4 97232586 97232905 -87055757 + MSTD LTR MaLR 1 389 -7 412 338 85 20 chr4 97232915 97233208 -87055454 - L2 LINE L2 -706 2608 2297 1833 198 132 77 chr4 97234111 97234817 -87053845 + LTR1B LTR ERV1 1 745 -81 219 165 253 51 chr4 97235104 97235183 -87053479 - MIR SINE MIR -6 202 107 1955 111 0 0 chr4 97235256 97235509 -87053153 + AluSg SINE Alu 1 253 -57 932 157 20 0 chr4 97236467 97236620 -87052042 - LOR1a LTR ERV1 0 497 342 2763 88 13 2 chr4 97236721 97237118 -87051544 + L1PA8 LINE L1 5771 6171 -1 302 116 0 0 chr4 97237139 97237182 -87051480 + LTR8 LTR ERV1 546 588 -103 225 0 0 0 chr4 97237575 97237600 -87051062 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 420 279 114 51 chr4 97237730 97237967 -87050695 - MIR SINE MIR -2 260 9 277 274 73 48 chr4 97239960 97240084 -87048578 + MIR SINE MIR 25 151 -111 319 274 75 9 chr4 97240239 97240345 -87048317 + L2 LINE L2 3197 3309 -4 1668 177 0 33 chr4 97240867 97241166 -87047496 + AluJb SINE Alu 3 291 -21 1109 301 48 31 chr4 97241616 97242034 -87046628 + L2 LINE L2 2541 2965 -349 1691 81 17 0 chr4 97242137 97242372 -87046290 + L1PA7 LINE L1 5799 6037 -117 25 0 0 0 chr4 97243333 97243358 -87045304 + AT_rich Low_complexity Low_complexity 1 25 0 246 62 0 0 chr4 97243661 97243693 -87044969 + (TTCTCC)n Simple_repeat Simple_repeat 4 35 0 2179 118 7 0 chr4 97245701 97245997 -87042665 + AluSx SINE Alu 1 298 -14 278 365 0 0 chr4 97246927 97247012 -87041650 - MIR3 SINE MIR -11 197 113 271 296 183 36 chr4 97247439 97247779 -87040883 + MLT1J LTR MaLR 43 489 -22 828 280 14 0 chr4 97248089 97248303 -87040359 - MIR SINE MIR -28 234 18 4745 34 0 3 chr4 97249068 97249920 -87038742 - L1P2 LINE L1 -498 5657 4809 4323 181 32 60 chr4 97249917 97250713 -87037949 + L1MC1 LINE L1 5327 6144 -189 * 1681 162 99 17 chr4 97250713 97251058 -87037604 + THE1C LTR MaLR 3 375 0 4323 181 32 60 chr4 97251058 97251078 -87037584 + L1MC1 LINE L1 6144 6163 -170 2181 123 0 0 chr4 97251078 97251370 -87037292 + AluSx SINE Alu 1 292 -20 4323 181 32 60 chr4 97251370 97251486 -87037176 + L1MC1 LINE L1 6163 6231 -102 360 0 0 0 chr4 97251486 97251526 -87037136 + (TG)n Simple_repeat Simple_repeat 1 40 0 4323 181 32 60 chr4 97251526 97251622 -87037040 + L1MC1 LINE L1 6231 6328 -5 198 0 0 0 chr4 97252251 97252273 -87036389 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1604 217 19 29 chr4 97252613 97252991 -87035671 - MLT1A2 LTR MaLR 0 374 1 324 298 32 0 chr4 97252991 97253085 -87035577 - MIR SINE MIR -78 184 88 1980 163 45 55 chr4 97253389 97253789 -87034873 + MER61B LTR ERV1 1 396 -29 1399 140 51 89 chr4 97253910 97254108 -87034554 - AluJo SINE Alu -30 282 97 1593 152 83 47 chr4 97254108 97254470 -87034192 - THE1C LTR MaLR 0 375 1 1399 140 51 89 chr4 97254470 97254564 -87034098 - AluJo SINE Alu -215 97 1 274 286 0 20 chr4 97254671 97254769 -87033893 + (TA)n Simple_repeat Simple_repeat 1 96 0 2309 91 0 19 chr4 97255249 97255557 -87033105 + AluSc SINE Alu 1 302 -7 195 42 0 0 chr4 97255808 97255832 -87032830 + (A)n Simple_repeat Simple_repeat 1 24 0 244 379 23 11 chr4 97257707 97257794 -87030868 + L2 LINE L2 3153 3240 -32 344 77 19 0 chr4 97257830 97257882 -87030780 + (CA)n Simple_repeat Simple_repeat 1 53 0 360 320 90 30 chr4 97258315 97258515 -87030147 + MIR SINE MIR 24 235 -27 196 352 0 0 chr4 97258870 97258924 -87029738 + MER5B DNA MER1_type 1 54 -124 2093 104 4 0 chr4 97259032 97259311 -87029351 + AluY SINE Alu 1 280 -31 251 259 98 140 chr4 97259391 97259534 -87029128 + MER5A DNA MER1_type 3 139 -50 2159 113 0 10 chr4 97259663 97259963 -87028699 + AluSg SINE Alu 1 297 -13 3254 134 28 4 chr4 97260386 97260930 -87027732 + L1MA4A LINE L1 5736 6292 -11 2012 157 0 0 chr4 97261227 97261539 -87027123 + AluSx SINE Alu 1 312 0 1259 240 5 45 chr4 97262400 97262800 -87025862 - L1M4 LINE L1 -919 5227 4844 2050 219 63 23 chr4 97262802 97263281 -87025381 - MLT1D LTR MaLR -2 503 6 669 183 0 0 chr4 97263296 97263422 -87025240 - L1M4 LINE L1 -1308 4838 4713 5720 174 10 7 chr4 97263556 97263644 -87025018 - L1PB1 LINE L1 -270 5881 5795 288 70 0 0 chr4 97263644 97263687 -87024975 + (TG)n Simple_repeat Simple_repeat 2 44 0 5720 174 10 7 chr4 97263687 97263702 -87024960 - L1PB1 LINE L1 -356 5795 5782 1997 131 0 3 chr4 97263702 97264007 -87024655 - AluSg1 SINE Alu 0 304 1 5720 174 10 7 chr4 97264007 97265664 -87022998 - L1PB1 LINE L1 -369 5782 4118 312 365 28 7 chr4 97266204 97266349 -87022313 + MIR3 SINE MIR 16 163 -45 13061 167 28 13 chr4 97266858 97269118 -87019544 + L1PB1 LINE L1 998 3224 -3643 2268 109 0 3 chr4 97269118 97269429 -87019233 + AluY SINE Alu 1 310 -1 13061 167 28 13 chr4 97269429 97269681 -87018981 + L1PB1 LINE L1 3224 3471 -3396 252 0 0 0 chr4 97269681 97269709 -87018953 + (CAA)n Simple_repeat Simple_repeat 2 29 0 13061 167 28 13 chr4 97269709 97272460 -87016202 + L1PB1 LINE L1 3471 6664 -203 22796 27 1 1 chr4 97272561 97275610 -87013052 - L1P1 LINE L1 -464 5691 2641 270 115 64 77 chr4 97275610 97275688 -87012974 + Tigger2a DNA MER2_type 36 112 -322 319 239 9 28 chr4 97275700 97275809 -87012853 - L1MC/D LINE L1 -2037 5771 5665 1283 273 96 45 chr4 97277314 97278143 -87010519 + L2 LINE L2 2414 3294 -19 428 351 54 22 chr4 97278361 97278546 -87010116 + MIR SINE MIR 32 222 -40 288 260 102 47 chr4 97281074 97281201 -87007461 + MIR SINE MIR 111 244 -18 830 307 111 10 chr4 97282227 97282615 -87006047 + LTR33 LTR ERVL 15 441 -80 2140 311 86 27 chr4 97283810 97284802 -87003860 + ERVL LTR ERVL 1997 3046 -2718 837 269 73 7 chr4 97284782 97285073 -87003589 + ERVL LTR ERVL 4155 4449 -1036 * 336 340 0 0 chr4 97285155 97285252 -87003410 + ERVL LTR ERVL 4602 4698 -1066 212 182 0 18 chr4 97285291 97285346 -87003316 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 348 302 68 11 chr4 97285486 97285608 -87003054 - ERVL LTR ERVL -2738 2747 2637 333 178 0 41 chr4 97286016 97286028 -87002634 + AluSp/q SINE Alu 233 244 -59 1580 96 0 0 chr4 97286028 97286227 -87002435 + AluSx SINE Alu 2 200 -112 333 178 0 41 chr4 97286227 97286287 -87002375 + AluSp/q SINE Alu 244 302 -1 1777 183 7 3 chr4 97288363 97288653 -87000009 + AluJb SINE Alu 1 291 -21 989 242 127 40 chr4 97288793 97289234 -86999428 + MER66A LTR ERV1 97 478 0 219 286 175 63 chr4 97289367 97289636 -86999026 + L2 LINE L2 2202 2500 -814 237 282 0 107 chr4 97289782 97289885 -86998777 + L2 LINE L2 3177 3268 -4 221 347 165 11 chr4 97290072 97290248 -86998414 + MIR SINE MIR 2 204 -58 257 262 16 0 chr4 97290672 97290733 -86997929 - L2 LINE L2 -1059 2255 2194 282 303 215 25 chr4 97290733 97291017 -86997645 - L2 LINE L2 -2327 987 650 225 224 0 17 chr4 97291842 97291900 -86996762 + (TA)n Simple_repeat Simple_repeat 1 57 0 1832 137 69 141 chr4 97291988 97292542 -86996120 - MER67D LTR ERV1 0 514 1 2306 167 7 35 chr4 97295106 97295536 -86993126 - MER47B DNA MER2_type 0 418 1 484 273 32 126 chr4 97295623 97295997 -86992665 - MER102b DNA MER1_type -1 340 2 1089 166 62 53 chr4 97296012 97296332 -86992330 - MER33 DNA MER1_type 0 324 2 219 399 35 0 chr4 97296559 97296702 -86991960 - L3 LINE CR1 -60 1517 1370 256 290 196 9 chr4 97296816 97296923 -86991739 + L3 LINE CR1 1370 1496 -81 614 265 59 9 chr4 97297072 97297440 -86991222 - L1MC/D LINE L1 -743 5403 5060 705 209 111 27 chr4 97297537 97297762 -86990900 + LTR54B LTR ERV1 3 246 -252 353 238 71 8 chr4 97297766 97297892 -86990770 - L1MC/D LINE L1 -2171 3975 3842 1336 239 60 21 chr4 97298128 97298599 -86990063 - L1MD3 LINE L1 0 8041 7563 * 5019 207 78 71 chr4 97298596 97299591 -86989071 - L1 LINE L1 -1755 4391 3405 2198 87 0 10 chr4 97299591 97299880 -86988782 - AluY SINE Alu -23 288 3 5019 207 78 71 chr4 97299880 97300255 -86988407 - L1 LINE L1 -2741 3405 3004 985 170 25 0 chr4 97300255 97300414 -86988248 - FRAM SINE Alu -2 164 2 5019 207 78 71 chr4 97300414 97300746 -86987916 - L1 LINE L1 -3142 3004 2676 889 143 36 14 chr4 97300860 97301000 -86987662 + AluJo SINE Alu 1 143 -169 397 329 13 60 chr4 97301328 97301437 -86987225 + ERVL LTR ERVL 5064 5158 -606 2283 98 3 13 chr4 97301437 97301742 -86986920 + AluSg SINE Alu 1 302 -8 397 329 13 60 chr4 97301742 97301866 -86986796 + ERVL LTR ERVL 5158 5286 -478 927 171 0 23 chr4 97302180 97302356 -86986306 - L1MA4 LINE L1 -437 5863 5692 22 35 0 0 chr4 97303225 97303254 -86985408 + AT_rich Low_complexity Low_complexity 1 29 0 2111 155 12 0 chr4 97303254 97303596 -86985066 + MER7A DNA MER2_type 2 345 -1 220 348 22 0 chr4 97303631 97303723 -86984939 + L2 LINE L2 3220 3313 0 391 241 160 32 chr4 97304231 97304418 -86984244 - MER112 DNA MER1_type -48 212 2 349 266 75 70 chr4 97304432 97304465 -86984197 - L2 LINE L2 -1212 2102 2071 2320 90 0 26 chr4 97304465 97304777 -86983885 + AluY SINE Alu 1 304 -7 349 266 75 70 chr4 97304777 97304984 -86983678 - L2 LINE L2 -1243 2071 1861 207 186 0 0 chr4 97305144 97305187 -86983475 + (CACCAT)n Simple_repeat Simple_repeat 2 44 0 339 229 108 0 chr4 97305461 97305544 -86983118 - MIR SINE MIR -17 245 154 2520 65 0 0 chr4 97305667 97305977 -86982685 + AluY SINE Alu 1 310 -1 414 0 0 0 chr4 97305986 97306032 -86982630 + (GA)n Simple_repeat Simple_repeat 1 46 0 834 296 82 44 chr4 97307756 97308232 -86980430 + MLT1G1 LTR MaLR 102 595 0 248 306 93 9 chr4 97308576 97308684 -86979978 + L2 LINE L2 3141 3257 -15 2182 99 14 0 chr4 97308955 97309123 -86979539 - AluY SINE Alu -11 300 125 183 42 0 0 chr4 97309123 97309147 -86979515 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2182 99 14 0 chr4 97309147 97309272 -86979390 - AluY SINE Alu -186 125 3 2539 53 0 0 chr4 97309532 97309832 -86978830 - AluY SINE Alu -11 300 1 277 244 61 24 chr4 97310199 97310281 -86978381 + LTR33 LTR ERVL 1 85 -436 680 67 0 0 chr4 97310281 97310371 -86978291 - AluY SINE Alu -9 302 213 564 309 5 43 chr4 97310371 97310578 -86978084 + LTR33 LTR ERVL 70 268 -253 1940 72 0 0 chr4 97311022 97311284 -86977378 + L1P LINE L1 5012 5273 -873 4931 80 37 19 chr4 97311625 97312301 -86976361 + LTR12 LTR ERV1 1 688 0 198 0 0 0 chr4 97312481 97312503 -86976159 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 711 235 249 5 chr4 97312510 97312614 -86976048 - AluJb SINE Alu -31 281 204 216 0 0 0 chr4 97312614 97312638 -86976024 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 711 235 249 5 chr4 97312638 97312754 -86975908 - AluJb SINE Alu -108 204 7 1975 123 3 32 chr4 97312775 97313083 -86975579 - AluSx SINE Alu -13 299 1 412 219 83 53 chr4 97313370 97313539 -86975123 - L1ME3A LINE L1 0 6170 5997 236 170 0 0 chr4 97313581 97313628 -86975034 - L1ME3A LINE L1 -489 5855 5809 301 276 54 24 chr4 97313640 97313866 -86974796 - L1ME3A LINE L1 -689 5489 5259 329 341 16 43 chr4 97313869 97314124 -86974538 - L1ME3A LINE L1 -891 5255 5008 869 109 0 121 chr4 97314917 97315091 -86973571 - THE1-int LTR MaLR -1113 467 315 758 199 50 79 chr4 97315088 97315329 -86973333 - L1MA4 LINE L1 -163 6137 5904 * 4101 151 3 18 chr4 97315336 97316462 -86972200 - L1MA4 LINE L1 -525 5775 4659 1976 199 17 29 chr4 97316493 97316904 -86971758 + MLT2D LTR ERVL 7 412 -2 28 71 0 0 chr4 97316997 97317053 -86971609 + AT_rich Low_complexity Low_complexity 1 56 0 22 0 0 0 chr4 97317159 97317181 -86971481 + AT_rich Low_complexity Low_complexity 1 22 0 485 86 0 0 chr4 97317296 97317366 -86971296 - L1PA7 LINE L1 -5 6149 6080 337 294 60 40 chr4 97317563 97317815 -86970847 + L1ME LINE L1 5521 5777 -344 22 0 0 0 chr4 97318072 97318094 -86970568 + AT_rich Low_complexity Low_complexity 1 22 0 310 284 12 42 chr4 97318456 97318606 -86970056 + GA-rich Low_complexity Low_complexity 3 253 0 201 176 0 0 chr4 97318953 97318987 -86969675 + (TA)n Simple_repeat Simple_repeat 2 35 0 1902 108 71 0 chr4 97319007 97319276 -86969386 - AluSg1 SINE Alu -21 288 1 3712 167 60 10 chr4 97319287 97320001 -86968661 - L1MC1 LINE L1 -20 6313 5564 * 9158 192 88 48 chr4 97319999 97321740 -86966922 - L1MCa LINE L1 -3193 3233 1310 180 0 0 0 chr4 97321740 97321760 -86966902 + (TTA)n Simple_repeat Simple_repeat 3 22 0 9158 192 88 48 chr4 97321760 97323125 -86965537 - L1MCa LINE L1 -5116 1310 1 711 116 16 25 chr4 97323415 97323536 -86965126 - AluSp/q SINE Alu -4 309 190 787 243 147 28 chr4 97424410 97424797 -86863865 + MER113 DNA MER1_type? 1 433 -88 523 300 65 1 chr4 97424896 97425070 -86863592 - MIR SINE MIR -33 229 49 2185 81 13 20 chr4 97425070 97425368 -86863294 + AluSx SINE Alu 1 296 -16 26 0 0 0 chr4 97425375 97425401 -86863261 + AT_rich Low_complexity Low_complexity 1 26 0 186 262 0 0 chr4 97425401 97425443 -86863219 - MIR SINE MIR -210 52 11 5916 99 31 0 chr4 97425824 97426762 -86861900 + L1PB2 LINE L1 5184 6147 -4 22 0 0 0 chr4 97426762 97426784 -86861878 + AT_rich Low_complexity Low_complexity 1 22 0 1754 224 33 51 chr4 97427119 97427633 -86861029 + MLT1D LTR MaLR 1 505 0 14647 49 8 0 chr4 97428181 97430797 -86857865 + L1PA5 LINE L1 3516 6153 -1 387 335 36 48 chr4 97431557 97431805 -86856857 + MIR SINE MIR 18 262 0 2008 237 155 20 chr4 97432301 97433189 -86855473 - L1ME2 LINE L1 -9 6155 5158 19448 61 2 0 chr4 97434030 97436572 -86852090 - L1P LINE L1 -2707 3439 895 2278 111 0 0 chr4 97436565 97436881 -86851781 - L1P LINE L1 -5826 320 5 * 1672 107 0 0 chr4 97437638 97437863 -86850799 - AluY SINE Alu -6 305 81 1669 152 98 20 chr4 97438940 97439288 -86849374 + THE1C LTR MaLR 1 375 0 245 349 74 0 chr4 97439483 97439632 -86849030 - L2 LINE L2 -731 2583 2424 244 371 0 17 chr4 97439895 97440011 -86848651 + L2 LINE L2 2917 3030 -242 22 35 0 0 chr4 97440254 97440283 -86848379 + AT_rich Low_complexity Low_complexity 1 29 0 4978 213 19 25 chr4 97441211 97442267 -86846395 - L1PA15-16 LINE L1 -3871 3713 2665 1818 160 73 18 chr4 97442267 97442610 -86846052 + THE1B LTR MaLR 1 362 -2 4978 213 19 25 chr4 97442610 97442809 -86845853 - L1PA15-16 LINE L1 -4919 2665 2466 689 147 19 8 chr4 97442792 97442942 -86845720 - L1M4 LINE L1 -353 5821 5668 * 1366 312 43 75 chr4 97443136 97444343 -86844319 - L1PA15-16 LINE L1 -6407 1174 6 2149 179 45 33 chr4 97444363 97444854 -86843808 - L1MB7 LINE L1 -9 6175 5679 246 62 0 0 chr4 97445525 97445557 -86843105 + (TG)n Simple_repeat Simple_repeat 1 32 0 391 86 14 14 chr4 97445557 97445627 -86843035 + (TA)n Simple_repeat Simple_repeat 1 70 0 2142 168 54 126 chr4 97445685 97446282 -86842380 - MLT2B3 LTR ERVL 0 554 1 1043 129 90 0 chr4 97446282 97446460 -86842202 - ERVL-B3 LTR ERVL -7 5757 5564 256 274 202 0 chr4 97446936 97447020 -86841642 + L2 LINE L2 3172 3272 0 2628 51 0 0 chr4 97447280 97447591 -86841071 + AluY SINE Alu 1 311 0 2136 178 95 5 chr4 97448023 97448467 -86840195 - MLT1D LTR MaLR -1 504 21 25 31 0 0 chr4 97449309 97449341 -86839321 + AT_rich Low_complexity Low_complexity 1 32 0 180 111 0 0 chr4 97449382 97449409 -86839253 + (TG)n Simple_repeat Simple_repeat 1 27 0 368 262 284 6 chr4 97449651 97449834 -86838828 + MIR SINE MIR 15 248 -14 21 0 0 0 chr4 97449979 97450000 -86838662 + AT_rich Low_complexity Low_complexity 1 21 0 205 351 36 18 chr4 97450215 97450326 -86838336 - MIR SINE MIR -73 135 23 243 257 14 0 chr4 97451332 97451402 -86837260 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 338 310 124 61 chr4 97451632 97452042 -86836620 - L1M2 LINE L1 -5514 1335 900 21 36 0 0 chr4 97452582 97452610 -86836052 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 97452877 97452898 -86835764 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr4 97453410 97453433 -86835229 + (TG)n Simple_repeat Simple_repeat 2 24 0 296 272 76 0 chr4 97453489 97453581 -86835081 - MIR3 SINE MIR -33 175 77 21 0 0 0 chr4 97453954 97453975 -86834687 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 97454035 97454063 -86834599 + AT_rich Low_complexity Low_complexity 1 28 0 390 344 12 57 chr4 97454565 97454812 -86833850 + MIR SINE MIR 26 261 -1 23 33 0 0 chr4 97455195 97455225 -86833437 + AT_rich Low_complexity Low_complexity 1 30 0 1087 333 127 24 chr4 97456980 97457856 -86830806 - L2 LINE L2 -545 2769 1804 5767 43 0 2 chr4 97458098 97459056 -86829606 - L1PA5 LINE L1 -532 5622 4666 3896 53 2 52 chr4 97459056 97459199 -86829463 + L1PA5 LINE L1 5638 5787 -367 2358 74 0 0 chr4 97459199 97459505 -86829157 + AluY SINE Alu 1 306 0 3896 53 2 52 chr4 97459505 97459900 -86828762 + L1PA5 LINE L1 5787 6152 -2 230 303 11 11 chr4 97459927 97460016 -86828646 + CT-rich Low_complexity Low_complexity 2 90 0 184 365 115 39 chr4 97460095 97460303 -86828359 + L2 LINE L2 980 1203 -2111 1820 137 0 0 chr4 97460375 97460631 -86828031 - AluSq SINE Alu -24 289 34 1231 203 45 7 chr4 97460703 97460994 -86827668 + MER33 DNA MER1_type 1 302 -22 330 312 78 0 chr4 97461213 97461354 -86827308 - L1MC/D LINE L1 -2592 5450 5299 1484 102 43 17 chr4 97461545 97461780 -86826882 - LTR1 LTR ERV1 -544 241 1 204 293 16 81 chr4 97462260 97462383 -86826279 + MIR SINE MIR 63 177 -85 227 303 30 20 chr4 97462610 97462709 -86825953 - MER103 DNA DNA -64 102 3 4245 146 31 16 chr4 97463174 97463322 -86825340 + Tigger2 DNA MER2_type 1 145 -2573 2790 7 0 3 chr4 97463322 97463628 -86825034 + AluYa5 SINE Alu 1 305 -6 4245 146 31 16 chr4 97463628 97464213 -86824449 + Tigger2 DNA MER2_type 145 745 -1973 1383 152 57 0 chr4 97464281 97464525 -86824137 + Tigger2 DNA MER2_type 2451 2708 -10 296 186 76 0 chr4 97465158 97465276 -86823386 + (TA)n Simple_repeat Simple_repeat 1 127 0 23 68 0 0 chr4 97465666 97465710 -86822952 + AT_rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr4 97466171 97466199 -86822463 + AT_rich Low_complexity Low_complexity 1 28 0 2944 210 24 26 chr4 97466199 97466842 -86821820 - L1MC2 LINE L1 -59 6285 5642 1944 122 4 0 chr4 97466842 97467121 -86821541 + AluSx SINE Alu 33 312 0 2944 210 24 26 chr4 97467121 97467181 -86821481 - L1MC2 LINE L1 -702 5642 5583 348 291 80 48 chr4 97467179 97467492 -86821170 - L1MEc LINE L1 -4783 1613 1291 * 243 0 0 0 chr4 97467792 97467819 -86820843 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2325 80 7 0 chr4 97469295 97469581 -86819081 + AluSp SINE Alu 1 288 -25 212 0 36 0 chr4 97469588 97469616 -86819046 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 246 306 81 75 chr4 97469882 97470068 -86818594 - MIR SINE MIR -48 214 28 310 270 14 0 chr4 97470339 97470413 -86818249 - L2 LINE L2 0 3313 3239 228 260 126 24 chr4 97471007 97471134 -86817528 + L1ME LINE L1 5560 5699 -422 779 261 62 18 chr4 97471716 97471988 -86816674 - MLT1J1 LTR MaLR -160 286 3 483 242 90 36 chr4 97472343 97472530 -86816132 - MLT1J2 LTR MaLR -184 225 37 21 0 0 0 chr4 97472617 97472638 -86816024 + AT_rich Low_complexity Low_complexity 1 21 0 328 254 107 8 chr4 97472929 97473051 -86815611 - L1MEc LINE L1 -5974 231 98 1765 135 80 39 chr4 97473104 97473397 -86815265 - L1MA8 LINE L1 -10 6281 5967 2412 65 0 13 chr4 97473397 97473705 -86814957 - AluY SINE Alu -7 304 1 1765 135 80 39 chr4 97473705 97473797 -86814865 - L1MA8 LINE L1 -324 5967 5880 940 148 0 0 chr4 97473797 97473946 -86814716 + L1MA7 LINE L1 5719 5867 -424 1984 81 42 0 chr4 97474014 97474274 -86814388 - AluSq SINE Alu -12 301 31 1818 158 21 3 chr4 97474516 97474844 -86813818 - L1MA8 LINE L1 -483 5817 5484 362 44 0 0 chr4 97474862 97474907 -86813755 + MADE1 DNA Mariner 34 78 -2 495 115 0 11 chr4 97474907 97474994 -86813668 - L1MA8 LINE L1 -811 5489 5404 2643 163 24 0 chr4 97474994 97475457 -86813205 + L1MA6 LINE L1 5819 6294 -6 998 244 9 0 chr4 97476514 97476731 -86811931 - MER20 DNA MER1_type 0 219 1 621 275 36 26 chr4 97476835 97477028 -86811634 + MIR SINE MIR 40 234 -28 2435 54 0 3 chr4 97477296 97477593 -86811069 + AluY SINE Alu 1 296 -15 291 28 0 0 chr4 97477593 97477629 -86811033 + (TA)n Simple_repeat Simple_repeat 2 37 0 250 241 19 0 chr4 97477824 97477878 -86810784 + MIR3 SINE MIR 128 182 -26 25 0 0 0 chr4 97478545 97478570 -86810092 + AT_rich Low_complexity Low_complexity 1 25 0 602 111 0 0 chr4 97478574 97478655 -86810007 - U6 snRNA snRNA 0 107 27 1775 172 56 0 chr4 97479975 97480278 -86808384 + MER7A DNA MER2_type 28 345 -1 29800 176 41 7 chr4 97480283 97480362 -86808300 - ERVL-B3 LTR ERVL -240 5524 5449 2489 68 64 160 chr4 97480362 97480863 -86807799 + MLT2A2 LTR ERVL 1 453 0 29800 176 41 7 chr4 97480863 97486124 -86802538 - ERVL-B3 LTR ERVL -315 5449 2 2811 188 12 50 chr4 97486125 97486168 -86802494 - MLT2B3 LTR ERVL 0 554 511 694 41 20 0 chr4 97486168 97486266 -86802396 + (TAGA)n Simple_repeat Simple_repeat 2 101 0 2811 188 12 50 chr4 97486266 97486798 -86801864 - MLT2B3 LTR ERVL -43 511 1 231 61 0 0 chr4 97487583 97487616 -86801046 + (CA)n Simple_repeat Simple_repeat 1 33 0 22 0 0 0 chr4 97487703 97487725 -86800937 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr4 97487991 97488027 -86800635 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr4 97489216 97489253 -86799409 + AT_rich Low_complexity Low_complexity 1 37 0 848 91 43 27 chr4 97489253 97489729 -86798933 + (TA)n Simple_repeat Simple_repeat 1 483 0 24 0 0 0 chr4 97489729 97489753 -86798909 + AT_rich Low_complexity Low_complexity 1 24 0 28 0 0 0 chr4 97489907 97489935 -86798727 + AT_rich Low_complexity Low_complexity 1 28 0 570 232 163 28 chr4 97490342 97490631 -86798031 - HAL1b LINE L1 -697 651 324 1959 134 3 23 chr4 97490727 97491033 -86797629 - AluSx SINE Alu -12 300 1 34 24 0 0 chr4 97491072 97491113 -86797549 + AT_rich Low_complexity Low_complexity 1 41 0 7332 37 1 0 chr4 97491113 97492562 -86796100 - L1PA5 LINE L1 -8 6146 4698 1664 131 6 105 chr4 97492733 97493076 -86795586 - AluJo SINE Alu -3 309 1 213 245 19 0 chr4 97493599 97493652 -86795010 - L2 LINE L2 -780 2534 2481 231 36 0 0 chr4 97495706 97495734 -86792928 + (TG)n Simple_repeat Simple_repeat 1 28 0 518 317 64 59 chr4 97496754 97497639 -86791023 + MER70-int LTR ERVL 885 3013 -2641 638 330 45 43 chr4 97497646 97498198 -86790464 + MER70-int LTR ERVL 2045 2597 -2426 315 0 0 0 chr4 97499397 97499432 -86789230 + (TG)n Simple_repeat Simple_repeat 1 35 0 2464 75 0 3 chr4 97500606 97500914 -86787748 - AluY SINE Alu -4 307 1 3935 153 53 9 chr4 97501101 97501800 -86786862 - L1PBa LINE L1 -6080 783 54 2136 330 57 38 chr4 97502149 97503421 -86785241 - HERV16 LTR ERVL -3700 1296 1 917 335 56 8 chr4 97503421 97503794 -86784868 - LTR16A LTR ERVL 0 450 60 1546 154 141 0 chr4 97504189 97504488 -86784174 - L1PA16 LINE L1 -3 6163 5823 308 305 0 0 chr4 97505072 97505154 -86783508 + MIR3 SINE MIR 123 204 -4 22 0 0 0 chr4 97505656 97505678 -86782984 + AT_rich Low_complexity Low_complexity 1 22 0 373 326 28 50 chr4 97506657 97506939 -86781723 + L2 LINE L2 1916 2191 -1123 661 337 65 57 chr4 97506967 97507289 -86781373 + L2 LINE L2 2367 2685 -628 2153 94 3 28 chr4 97507289 97507607 -86781055 - AluSq SINE Alu -3 310 1 661 337 65 57 chr4 97507607 97507981 -86780681 + L2 LINE L2 2685 3063 -250 1428 182 13 132 chr4 97508106 97508501 -86780161 - MER7A DNA MER2_type 0 346 1 255 259 49 25 chr4 97508501 97508582 -86780080 + L2 LINE L2 3227 3309 -4 525 253 121 64 chr4 97509285 97509566 -86779096 + MLT1J LTR MaLR 13 309 -202 240 155 42 56 chr4 97509623 97509694 -86778968 + MLT1J LTR MaLR 439 508 -3 24 32 0 0 chr4 97509708 97509739 -86778923 + AT_rich Low_complexity Low_complexity 1 31 0 1050 162 35 0 chr4 97512808 97513006 -86775656 + AluSc SINE Alu 83 287 -22 294 196 47 27 chr4 97513007 97513155 -86775507 + (TA)n Simple_repeat Simple_repeat 1 151 0 618 177 41 27 chr4 97513202 97513349 -86775313 - MER33 DNA MER1_type -175 149 1 638 0 0 0 chr4 97513813 97513885 -86774777 - tRNA-Pro-CCG tRNA tRNA -3 72 1 423 127 14 0 chr4 97514906 97514977 -86773685 + tRNA-Pro-CCA tRNA tRNA 1 72 -3 720 134 18 0 chr4 97515472 97515584 -86773078 + AluSc SINE Alu 144 257 -52 3955 73 19 40 chr4 97515584 97516724 -86771938 - MER11A LTR ERVK -6 1260 1 1247 142 10 5 chr4 97516728 97516933 -86771729 + AluJb SINE Alu 85 290 -22 264 288 98 23 chr4 97517864 97517996 -86770666 + L2 LINE L2 2526 2667 -647 481 304 128 43 chr4 97518019 97518480 -86770182 + L2 LINE L2 2805 3304 -9 24 0 0 0 chr4 97519533 97519557 -86769105 + AT_rich Low_complexity Low_complexity 1 24 0 405 153 0 0 chr4 97519559 97519618 -86769044 + AluS SINE Alu 2 60 -258 6514 37 14 44 chr4 97519719 97520636 -86768026 + L1PA4 LINE L1 5265 6154 -1 328 254 170 12 chr4 97520665 97520751 -86767911 - MER58C DNA MER1_type -2229 191 120 266 87 22 0 chr4 97520751 97520797 -86767865 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 328 254 170 12 chr4 97520797 97520875 -86767787 - MER58C DNA MER1_type -2300 120 1 2049 112 17 7 chr4 97520959 97521246 -86767416 + AluSg SINE Alu 3 292 -18 1674 134 42 56 chr4 97521485 97521791 -86766871 - AluJb SINE Alu -10 302 1 2316 157 99 8 chr4 97522195 97524016 -86764646 - SATR1 Satellite Satellite -2 1986 1 285 257 5 43 chr4 97524020 97524207 -86764455 + (TAA)n Simple_repeat Simple_repeat 1 180 0 21 0 0 0 chr4 97524242 97524263 -86764399 + AT_rich Low_complexity Low_complexity 1 21 0 621 213 32 0 chr4 97524289 97524444 -86764218 + SATR1 Satellite Satellite 192 351 -119 977 61 0 0 chr4 97524544 97524659 -86764003 + AluSg/x SINE Alu 181 295 -15 228 189 57 0 chr4 97526940 97526993 -86761669 + L1M3 LINE L1 5433 5488 -683 700 174 0 0 chr4 97527013 97527122 -86761540 + FLAM_C SINE Alu 5 113 -30 1334 205 40 20 chr4 97527234 97527536 -86761126 + MSTD LTR MaLR 89 396 0 726 224 6 19 chr4 97527536 97527696 -86760966 - Charlie1a DNA MER1_type -1297 158 1 514 327 44 22 chr4 97527761 97528079 -86760583 + L2 LINE L2 1671 1995 -1319 546 289 88 10 chr4 97528085 97528289 -86760373 - MIR SINE MIR -32 230 11 504 331 86 35 chr4 97528633 97528923 -86759739 + L2 LINE L2 2968 3272 0 369 301 51 13 chr4 97529402 97529558 -86759104 - MER5A DNA MER1_type 0 189 28 442 216 123 43 chr4 97529634 97529796 -86758866 + MLT1B LTR MaLR 1 175 -215 1075 241 9 0 chr4 97529987 97530219 -86758443 - Charlie1a DNA MER1_type -1204 251 18 276 273 13 0 chr4 97530264 97530341 -86758321 + L1ME4a LINE L1 5970 6047 -74 26 64 0 0 chr4 97530357 97530404 -86758258 + AT_rich Low_complexity Low_complexity 1 47 0 552 143 17 50 chr4 97530780 97530899 -86757763 + Charlie5 DNA MER1_type 1 115 -2497 1287 178 95 3 chr4 97530907 97531266 -86757396 + Charlie5 DNA MER1_type 2233 2624 0 240 337 22 0 chr4 97533405 97533494 -86755168 + MIR SINE MIR 165 255 -7 265 280 20 50 chr4 97533617 97533717 -86754945 - MIR SINE MIR -109 153 57 225 182 52 13 chr4 97536732 97536809 -86751853 - L1ME1 LINE L1 -7 6159 6080 826 357 66 15 chr4 97537316 97538081 -86750581 - HERVL LTR ERVL -1838 3816 2971 3568 113 11 6 chr4 97538104 97538633 -86750029 + L1PA11 LINE L1 5643 6174 0 1148 86 81 21 chr4 97538689 97538875 -86749787 - MER30 DNA MER1_type -33 197 1 27 49 0 0 chr4 97539009 97539050 -86749612 + AT_rich Low_complexity Low_complexity 1 41 0 1051 304 83 64 chr4 97539091 97539462 -86749200 - HERVL LTR ERVL -3059 2705 2342 1629 174 48 33 chr4 97539462 97539796 -86748866 + MER44D DNA MER2_type 1 609 0 1051 304 83 64 chr4 97539796 97540330 -86748332 - HERVL LTR ERVL -3422 2342 1783 414 305 11 11 chr4 97540742 97540916 -86747746 + MER58C DNA MER1_type 2 175 -40 280 351 59 34 chr4 97540936 97541377 -86747285 - HERVL LTR ERVL -4493 1271 820 5951 91 9 5 chr4 97541393 97542560 -86746102 - L1PA14 LINE L1 -3 6158 4968 207 69 0 0 chr4 97542572 97542601 -86746061 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 1673 141 42 56 chr4 97542996 97543302 -86745360 + AluSx SINE Alu 1 302 -10 2251 101 0 0 chr4 97543541 97543838 -86744824 - AluY SINE Alu -14 297 1 755 73 9 0 chr4 97543838 97543948 -86744714 - L1P4 LINE L1 -379 5782 5672 454 180 0 0 chr4 97543945 97544045 -86744617 - L1P LINE L1 -939 5207 5108 * 22 56 0 0 chr4 97544171 97544207 -86744455 + AT_rich Low_complexity Low_complexity 1 36 0 273 313 62 7 chr4 97544373 97544517 -86744145 - MIR SINE MIR -2 260 109 508 340 49 38 chr4 97544851 97545198 -86743464 - LTR16C LTR ERVL -41 450 100 21 0 0 0 chr4 97545952 97545973 -86742689 + AT_rich Low_complexity Low_complexity 1 21 0 334 305 46 23 chr4 97546604 97546735 -86741927 - HAL1b LINE L1 -1 1347 1214 22 88 0 0 chr4 97546793 97546850 -86741812 + AT_rich Low_complexity Low_complexity 1 57 0 452 271 93 9 chr4 97546887 97547208 -86741454 - HAL1b LINE L1 -378 970 623 646 296 94 40 chr4 97547354 97547706 -86740956 - HAL1 LINE L1 -144 2363 1993 879 257 112 3 chr4 97547850 97548188 -86740474 - L1ME3 LINE L1 -7 6155 5781 228 251 65 101 chr4 97548223 97548363 -86740299 - HAL1b LINE L1 -898 450 307 2352 97 0 0 chr4 97548363 97548663 -86739999 - AluY SINE Alu -10 301 2 228 251 65 101 chr4 97548663 97548860 -86739802 - HAL1b LINE L1 -1041 307 125 2024 147 0 0 chr4 97550966 97551258 -86737404 - AluSx SINE Alu -4 308 17 658 249 86 0 chr4 97551267 97551476 -86737186 - MLT1F LTR MaLR 0 542 316 308 244 98 80 chr4 97551693 97551980 -86736682 - HAL1b LINE L1 -969 379 88 375 228 0 0 chr4 97552332 97552424 -86736238 + CT-rich Low_complexity Low_complexity 1 92 0 2278 107 3 0 chr4 97552478 97552778 -86735884 - AluSp SINE Alu -12 301 1 2251 110 3 0 chr4 97555698 97556008 -86732654 + AluSx SINE Alu 2 312 0 551 211 0 100 chr4 97556159 97556339 -86732323 + L1MC4 LINE L1 7454 7615 -427 28 86 0 0 chr4 97557112 97557182 -86731480 + AT_rich Low_complexity Low_complexity 1 70 0 411 67 53 13 chr4 97557379 97557454 -86731208 + CT-rich Low_complexity Low_complexity 3 80 0 1966 149 10 7 chr4 97557456 97557757 -86730905 - AluSx SINE Alu -10 302 1 22 25 0 25 chr4 97559415 97559437 -86729225 + AT_rich Low_complexity Low_complexity 1 23 -16 2877 6 0 0 chr4 97559437 97559748 -86728914 - AluYa5 SINE Alu 0 311 1 22 25 0 25 chr4 97559748 97559765 -86728897 + AT_rich Low_complexity Low_complexity 23 39 0 28 29 0 0 chr4 97559814 97559849 -86728813 + AT_rich Low_complexity Low_complexity 1 35 0 3120 116 60 6 chr4 97559849 97560334 -86728328 + MER9 LTR ERVK 1 511 0 1482 173 16 4 chr4 97560356 97560605 -86728057 - AluSg SINE Alu -58 252 1 539 231 28 21 chr4 97560641 97560784 -86727878 - L1ME4a LINE L1 -3 6118 5975 198 0 0 0 chr4 97561097 97561119 -86727543 + (TTA)n Simple_repeat Simple_repeat 3 24 0 2179 12 0 0 chr4 97561119 97561364 -86727298 - L1PA3 LINE L1 -18 6137 5893 264 311 90 11 chr4 97561825 97562002 -86726660 - MIR SINE MIR -2 260 70 2090 117 0 23 chr4 97563110 97563417 -86725245 + AluSg SINE Alu 1 300 -10 184 107 0 0 chr4 97563530 97563558 -86725104 - L2 LINE L2 -20 3293 3266 318 288 124 77 chr4 97564040 97564273 -86724389 + MIR SINE MIR 3 246 -16 638 124 0 0 chr4 97564627 97564724 -86723938 + L1MA2 LINE L1 6208 6304 0 2056 51 0 0 chr4 97565341 97565595 -86723067 - L1PA4 LINE L1 -2 6153 5900 1751 34 0 0 chr4 97565595 97565802 -86722860 + L1PA4 LINE L1 5688 5894 -261 345 284 43 28 chr4 97565905 97565919 -86722743 + MIR SINE MIR 1 13 -249 1395 138 65 126 chr4 97565919 97566317 -86722345 - THE1C LTR MaLR 0 375 2 345 284 43 28 chr4 97566317 97566443 -86722219 + MIR SINE MIR 13 143 -119 294 355 139 17 chr4 97566453 97566625 -86722037 + L2 LINE L2 3075 3267 -5 454 273 31 0 chr4 97566625 97566673 -86721989 + MIR SINE MIR 131 176 -86 339 25 0 0 chr4 97566673 97566713 -86721949 + (TG)n Simple_repeat Simple_repeat 2 41 0 454 273 31 0 chr4 97566713 97566792 -86721870 + MIR SINE MIR 176 262 0 2340 140 44 7 chr4 97566862 97567206 -86721456 - L1PB1 LINE L1 -2 6149 5786 231 36 0 0 chr4 97567206 97567234 -86721428 + (CA)n Simple_repeat Simple_repeat 1 28 0 2340 140 44 7 chr4 97567234 97567302 -86721360 - L1PB1 LINE L1 -365 5786 5722 1281 276 53 13 chr4 97567315 97567840 -86720822 - L1PBa LINE L1 -6312 551 6 231 114 0 0 chr4 97568957 97568992 -86719670 + (CA)n Simple_repeat Simple_repeat 2 36 0 258 313 19 12 chr4 97568993 97569153 -86719509 + (TA)n Simple_repeat Simple_repeat 2 162 0 2056 119 0 33 chr4 97569694 97570040 -86718622 - AluSx SINE Alu 0 336 1 4862 134 10 1 chr4 97570040 97570765 -86717897 + Tigger1 DNA MER2_type 20 750 -1668 336 254 0 0 chr4 97570856 97570923 -86717739 - L2 LINE L2 -11 3302 3236 23 0 0 0 chr4 97571846 97571869 -86716793 + AT_rich Low_complexity Low_complexity 1 23 0 367 257 93 68 chr4 97571878 97571928 -86716734 - L1ME4a LINE L1 -83 6038 5991 312 91 0 0 chr4 97571928 97571972 -86716690 + (TA)n Simple_repeat Simple_repeat 1 44 0 367 257 93 68 chr4 97571972 97572306 -86716356 - L1ME4a LINE L1 -130 5991 5644 201 147 0 0 chr4 97572515 97572549 -86716113 + (GA)n Simple_repeat Simple_repeat 1 34 0 1087 241 20 4 chr4 97572878 97573131 -86715531 - MER90 LTR ERV1 0 614 358 485 269 0 0 chr4 97573162 97573266 -86715396 + MER81 DNA DNA 7 110 -4 1203 244 88 3 chr4 97573272 97573592 -86715070 - MER90 LTR ERV1 -267 347 1 270 221 0 15 chr4 97573850 97573918 -86714744 - MER103 DNA DNA -47 119 53 814 156 0 0 chr4 97574710 97574832 -86713830 - FLAM_C SINE Alu -21 122 1 291 296 63 7 chr4 97574838 97574980 -86713682 + L2 LINE L2 3160 3309 -4 870 214 33 38 chr4 97577750 97577960 -86710702 + MER20 DNA MER1_type 2 210 -9 290 260 10 60 chr4 97578872 97578972 -86709690 - MER5B DNA MER1_type -2 176 82 673 241 72 0 chr4 97579735 97579901 -86708761 - MER45A DNA AcHobo 0 178 1 2319 109 0 0 chr4 97580001 97580312 -86708350 - AluSx SINE Alu -1 311 1 195 100 0 0 chr4 97581243 97581273 -86707389 + (TG)n Simple_repeat Simple_repeat 2 31 0 385 209 9 52 chr4 97583963 97584078 -86704584 + MER112 DNA MER1_type 8 117 -143 262 238 75 25 chr4 97584109 97584189 -86704473 + L1MCc LINE L1 -313 4294967066 -6276 2086 189 94 23 chr4 97584199 97584809 -86703853 - MER39 LTR ERV1 -13 694 1 2654 237 83 132 chr4 97584809 97586274 -86702388 + L1MCc LINE L1 109 1678 -4886 * 4838 9 0 4 chr4 97586257 97586809 -86701853 + L1HS LINE L1 5606 6155 0 1619 217 111 38 chr4 97586816 97587381 -86701281 + L1MCc LINE L1 1657 2316 -4248 245 27 54 0 chr4 97587381 97587418 -86701244 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1619 217 111 38 chr4 97587418 97587744 -86700918 + L1MCc LINE L1 2316 2617 -3947 291 20 0 100 chr4 97587766 97587816 -86700846 - MADE1 DNA Mariner -2 78 34 591 305 13 4 chr4 97587910 97588146 -86700516 + L1MCc LINE L1 2713 2950 -3614 207 98 0 98 chr4 97588462 97588513 -86700149 + (TTTTTA)n Simple_repeat Simple_repeat 1 46 0 1965 173 0 3 chr4 97590907 97591219 -86697443 + AluSx SINE Alu 1 311 -1 6327 175 64 23 chr4 97593176 97593523 -86695139 + L1M1 LINE L1 12 343 -7222 1825 125 78 42 chr4 97593523 97593883 -86694779 - THE1C LTR MaLR 0 375 3 6327 175 64 23 chr4 97593883 97595837 -86692825 + L1M1 LINE L1 343 2214 -5351 1891 122 0 0 chr4 97595837 97596100 -86692562 + AluSx SINE Alu 37 299 -13 6327 175 64 23 chr4 97596100 97597596 -86691066 + L1M1 LINE L1 2214 4853 -2712 243 200 25 25 chr4 97598136 97598216 -86690446 + MER113 DNA MER1_type? 1 80 -441 217 216 0 0 chr4 97598219 97598256 -86690406 + (TG)n Simple_repeat Simple_repeat 2 38 0 256 175 0 0 chr4 97598384 97598424 -86690238 + MER113 DNA MER1_type? 454 493 -28 503 345 90 31 chr4 97598837 97599092 -86689570 + MER115 DNA AcHobo 164 433 -260 1444 167 117 11 chr4 97599312 97599594 -86689068 + AluJo SINE Alu 1 312 0 812 154 0 0 chr4 97600299 97600429 -86688233 - FLAM_C SINE Alu -2 131 2 976 253 62 22 chr4 97600660 97600933 -86687729 + MLT1H1 LTR MaLR 10 293 -262 1719 101 151 32 chr4 97601047 97601549 -86687113 + MER51A LTR ERV1 1 634 0 718 234 34 6 chr4 97601704 97601879 -86686783 + MLT1H1 LTR MaLR 411 590 0 2275 94 7 3 chr4 97601951 97602250 -86686412 + AluSx SINE Alu 3 302 -10 627 269 39 16 chr4 97604696 97604878 -86683784 + MIR SINE MIR 60 245 -17 2356 67 3 0 chr4 97605042 97605349 -86683313 - AluY SINE Alu 0 308 1 2096 203 92 9 chr4 97605716 97607436 -86681226 - SATR1 Satellite Satellite 0 1862 1 1877 170 9 3 chr4 97607505 97607846 -86680816 - L1 LINE L1 -1270 4876 4534 236 189 14 54 chr4 97608030 97608104 -86680558 + MIR SINE MIR 191 261 -1 708 262 38 15 chr4 97608668 97608931 -86679731 - L1PBa LINE L1 -6589 274 6 202 324 11 39 chr4 97610046 97610228 -86678434 + (TA)n Simple_repeat Simple_repeat 2 178 0 203 171 0 0 chr4 97610791 97610832 -86677830 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1450 158 26 74 chr4 97610835 97611145 -86677517 - AluSx SINE Alu -17 295 1 338 287 116 0 chr4 97611149 97611278 -86677384 - MLT1H1 LTR MaLR -353 202 59 372 139 14 14 chr4 97611378 97611450 -86677212 - L1P5 LINE L1 -415 5736 5665 2070 171 85 15 chr4 97611729 97612198 -86676464 - MLT1D LTR MaLR 0 505 4 186 43 0 0 chr4 97612309 97612332 -86676330 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 655 204 9 0 chr4 97612334 97612447 -86676215 - FLAM_A SINE Alu -19 114 1 424 267 85 18 chr4 97613065 97613230 -86675432 - MIR SINE MIR -66 196 21 2068 66 30 0 chr4 97613444 97613715 -86674947 - L1PA7 LINE L1 0 6154 5876 316 220 209 0 chr4 97614001 97614092 -86674570 + L2 LINE L2 3202 3311 -2 258 258 39 96 chr4 97614481 97614565 -86674097 - LTR33 LTR ERVL -2 519 432 2123 135 0 0 chr4 97614565 97614862 -86673800 + AluSx SINE Alu 2 298 -14 258 258 39 96 chr4 97614862 97615006 -86673656 - LTR33 LTR ERVL -89 432 304 249 348 77 70 chr4 97615023 97615282 -86673380 + L2 LINE L2 3012 3272 0 1592 211 10 3 chr4 97615428 97615731 -86672931 + AluJo SINE Alu 1 305 -7 208 303 226 7 chr4 97616029 97616184 -86672478 + MIR SINE MIR 71 259 -3 556 225 33 0 chr4 97616324 97616444 -86672218 + AluSg/x SINE Alu 138 261 -51 978 48 79 0 chr4 97616455 97616581 -86672081 + MER85 DNA T2_type 1 136 -3 2256 117 14 0 chr4 97617653 97618011 -86670651 - L1MA3 LINE L1 -1 6304 5942 * 6840 62 26 0 chr4 97618006 97619065 -86669597 - L1PA7 LINE L1 0 6154 5086 5152 81 3 3 chr4 97619069 97619826 -86668836 + L1PA7 LINE L1 4327 5083 -1063 477 275 42 78 chr4 97619942 97620251 -86668411 + L2 LINE L2 2815 3112 -201 1433 173 7 0 chr4 97620548 97620819 -86667843 + L1MD1 LINE L1 5555 5827 -415 365 232 48 24 chr4 97621194 97621319 -86667343 - LTR33A LTR ERVL -336 187 60 2742 106 0 11 chr4 97621537 97621916 -86666746 - THE1C LTR MaLR 0 375 1 9949 111 33 45 chr4 97621916 97623515 -86665147 - THE1C-int LTR MaLR 0 1580 1 1996 121 52 30 chr4 97623516 97623879 -86664783 - THE1C LTR MaLR -1 374 4 262 304 112 8 chr4 97624827 97624952 -86663710 - L2 LINE L2 -306 2966 2829 440 251 126 37 chr4 97625431 97625622 -86663040 - MIR SINE MIR -40 222 15 593 328 77 47 chr4 97625946 97626613 -86662049 - L2 LINE L2 -597 2717 2031 1493 169 45 9 chr4 97626727 97627058 -86661604 + L1MB3 LINE L1 5793 6135 -48 2139 101 0 7 chr4 97627063 97627351 -86661311 + AluSc SINE Alu 5 290 -19 260 109 18 18 chr4 97627399 97627454 -86661208 + L1MB2 LINE L1 6115 6169 -2 282 236 14 0 chr4 97627609 97627681 -86660981 - MER116 DNA Mariner -7 73 1 290 394 30 18 chr4 97628235 97628400 -86660262 - MER5A DNA MER1_type -11 178 12 389 79 0 16 chr4 97628685 97628748 -86659914 + (GGA)n Simple_repeat Simple_repeat 1 62 0 230 328 103 0 chr4 97629381 97629497 -86659165 - L3b LINE CR1 -167 1416 1289 758 311 94 48 chr4 97630719 97631268 -86657394 - L2 LINE L2 0 3313 2733 1790 151 37 48 chr4 97631274 97631651 -86657011 - THE1C LTR MaLR 0 375 3 5901 165 65 27 chr4 97631662 97633605 -86655057 + L1M1 LINE L1 382 3353 -4212 1900 122 0 0 chr4 97633605 97633868 -86654794 + AluSx SINE Alu 37 299 -13 5901 165 65 27 chr4 97633868 97633959 -86654703 + L1M1 LINE L1 3353 3439 -4126 21 36 0 0 chr4 97634811 97634839 -86653823 + AT_rich Low_complexity Low_complexity 1 28 0 753 231 29 0 chr4 97638338 97638511 -86650151 - MER45A DNA AcHobo 0 178 1 799 198 37 6 chr4 97639885 97640047 -86648615 + MER5B DNA MER1_type 1 167 -11 26 0 0 0 chr4 97640214 97640240 -86648422 + AT_rich Low_complexity Low_complexity 1 26 0 22 56 0 0 chr4 97640382 97640418 -86648244 + AT_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr4 97640723 97640755 -86647907 + AT_rich Low_complexity Low_complexity 1 32 0 203 243 0 0 chr4 97641940 97641977 -86646685 + polypurine Low_complexity Low_complexity 4 40 0 290 272 108 42 chr4 97642393 97642606 -86646056 - L2 LINE L2 0 3313 3087 * 933 324 173 23 chr4 97642602 97643297 -86645365 - L2 LINE L2 -555 2759 1961 2474 87 0 0 chr4 97643999 97644309 -86644353 - AluY SINE Alu -1 310 1 21 0 0 0 chr4 97644649 97644670 -86643992 + AT_rich Low_complexity Low_complexity 1 21 0 29265 71 16 12 chr4 97644970 97648279 -86640383 - HERVK9 LTR ERVK -1766 4150 753 225 217 0 87 chr4 97648279 97648348 -86640314 - MER5B DNA MER1_type -61 117 55 29265 71 16 12 chr4 97648348 97649104 -86639558 - HERVK9 LTR ERVK -5163 753 1 3258 102 7 56 chr4 97649104 97649436 -86639226 - MER9 LTR ERVK 0 511 213 13246 40 17 0 chr4 97649436 97651790 -86636872 + L1PA5 LINE L1 3772 6140 -14 3258 102 7 56 chr4 97651790 97651994 -86636668 - MER9 LTR ERVK -298 213 1 325 161 12 0 chr4 97651994 97652075 -86636587 + L1MA9 LINE L1 6231 6312 0 710 216 50 22 chr4 97652346 97652527 -86636135 - MER5A DNA MER1_type -3 186 1 2341 76 3 38 chr4 97652649 97652964 -86635698 + AluSp SINE Alu 1 304 -9 622 237 187 5 chr4 97653230 97653428 -86635234 - MIR SINE MIR -1 261 28 22 0 0 0 chr4 97653814 97653836 -86634826 + AT_rich Low_complexity Low_complexity 1 22 0 222 37 0 0 chr4 97654290 97654317 -86634345 + (CA)n Simple_repeat Simple_repeat 2 28 0 181 141 0 31 chr4 97654847 97654911 -86633751 + (TAAA)n Simple_repeat Simple_repeat 1 62 0 3001 197 47 3 chr4 97656758 97657377 -86631285 + MER82 DNA MER2_type 1 646 -7 224 348 33 66 chr4 97657422 97657603 -86631059 - MIR SINE MIR -86 176 2 496 257 113 0 chr4 97658425 97658563 -86630099 - MIR SINE MIR -55 153 1 21 36 0 0 chr4 97659722 97659750 -86628912 + AT_rich Low_complexity Low_complexity 1 28 0 2310 76 0 0 chr4 97662004 97662306 -86626356 + L1PA5 LINE L1 5846 6147 -7 224 256 12 0 chr4 97662850 97662936 -86625726 + GA-rich Low_complexity Low_complexity 3 89 0 423 0 0 0 chr4 97663939 97663986 -86624676 + (TG)n Simple_repeat Simple_repeat 1 47 0 765 238 72 0 chr4 97667249 97667430 -86621232 + MER20 DNA MER1_type 7 200 -19 641 278 40 11 chr4 97667440 97667616 -86621046 + MER5A DNA MER1_type 1 181 -8 21 0 0 0 chr4 97668375 97668396 -86620266 + AT_rich Low_complexity Low_complexity 1 21 0 211 291 73 0 chr4 97669243 97669298 -86619364 - L2 LINE L2 0 3272 3214 1028 184 34 24 chr4 97669597 97669804 -86618858 - MER6B DNA MER2_type 0 210 2 261 57 0 0 chr4 97669827 97669862 -86618800 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 26 74 0 0 chr4 97670086 97670140 -86618522 + AT_rich Low_complexity Low_complexity 1 54 0 226 256 244 0 chr4 97671054 97671132 -86617530 - MER5A DNA MER1_type -83 106 10 29 28 0 0 chr4 97671294 97671330 -86617332 + AT_rich Low_complexity Low_complexity 1 36 0 959 98 148 44 chr4 97671395 97671500 -86617162 + MER30 DNA MER1_type 1 94 -136 324 0 0 0 chr4 97671500 97671536 -86617126 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 959 98 148 44 chr4 97671536 97671613 -86617049 + MER30 DNA MER1_type 94 202 -28 722 178 17 11 chr4 97671696 97671870 -86616792 - L1MA5 LINE L1 -2 6298 6124 1216 313 77 52 chr4 97673528 97674081 -86614581 - L2 LINE L2 0 3313 2715 1790 159 37 42 chr4 97674081 97674458 -86614204 - THE1C LTR MaLR 0 375 1 1216 313 77 52 chr4 97674458 97674896 -86613766 - L2 LINE L2 -598 2715 2290 632 280 11 6 chr4 97674896 97675078 -86613584 - L2 LINE L2 -1224 2090 1908 24 0 0 0 chr4 97676439 97676463 -86612199 + AT_rich Low_complexity Low_complexity 1 24 0 184 217 65 130 chr4 97676781 97676873 -86611789 - L2 LINE L2 -100 3213 3128 24 32 0 0 chr4 97676875 97676906 -86611756 + AT_rich Low_complexity Low_complexity 1 31 0 27 29 0 0 chr4 97677035 97677069 -86611593 + AT_rich Low_complexity Low_complexity 1 34 0 239 337 174 0 chr4 97677168 97677260 -86611402 + L2 LINE L2 3139 3246 -26 226 265 0 0 chr4 97677283 97677332 -86611330 + (TG)n Simple_repeat Simple_repeat 2 50 0 251 277 198 0 chr4 97677387 97677488 -86611174 - L2 LINE L2 -21 3292 3172 615 203 55 0 chr4 97677699 97677827 -86610835 - MIR SINE MIR -111 151 17 1811 220 55 41 chr4 97678185 97678698 -86609964 + MLT2B1 LTR ERVL 1 520 0 231 366 142 0 chr4 97679069 97679203 -86609459 + MER20B DNA MER1_type 26 178 -605 195 275 101 64 chr4 97679509 97679618 -86609044 + L3 LINE CR1 1367 1479 -98 523 247 16 103 chr4 97681949 97682192 -86606470 + L2 LINE L2 3014 3235 -78 2154 171 36 11 chr4 97682777 97683216 -86605446 + L1 LINE L1 4823 5272 -874 224 193 11 34 chr4 97683218 97683306 -86605356 + (TA)n Simple_repeat Simple_repeat 2 87 0 227 280 0 43 chr4 97683307 97683400 -86605262 - L1MC4 LINE L1 -1340 6702 6614 353 230 17 22 chr4 97683424 97683602 -86605060 + (TA)n Simple_repeat Simple_repeat 1 177 0 4306 107 25 1 chr4 97683619 97684267 -86604395 + L1MA3 LINE L1 5266 5928 -376 6981 58 3 4 chr4 97684267 97685282 -86603380 + L1PA7 LINE L1 5141 6154 0 2291 117 14 0 chr4 97685282 97685635 -86603027 + L1MA3 LINE L1 5942 6304 -1 398 292 32 49 chr4 97686447 97686721 -86601941 - MLT1I LTR MaLR -95 351 66 3842 172 104 109 chr4 97687313 97687933 -86600729 - L1MC3 LINE L1 0 7785 7083 287 233 33 22 chr4 97687933 97688023 -86600639 - MLT1I LTR MaLR -456 111 21 3842 172 104 109 chr4 97688023 97688468 -86600194 - L1MC3 LINE L1 -702 7083 6637 241 333 0 12 chr4 97688716 97688800 -86599862 + (CATATA)n Simple_repeat Simple_repeat 3 85 0 230 326 12 23 chr4 97689851 97689937 -86598725 - L2 LINE L2 -5 3308 3224 377 370 126 23 chr4 97690035 97690703 -86597959 - L2 LINE L2 -245 3027 2289 301 325 156 28 chr4 97690830 97691042 -86597620 + MIR SINE MIR 10 248 -14 237 33 0 0 chr4 97691042 97691072 -86597590 + (TG)n Simple_repeat Simple_repeat 1 30 0 324 64 0 0 chr4 97691072 97691119 -86597543 + (GA)n Simple_repeat Simple_repeat 2 48 0 272 300 67 17 chr4 97692388 97692508 -86596154 - MIR SINE MIR -10 252 127 410 323 23 15 chr4 97692667 97692797 -86595865 + L2 LINE L2 3183 3313 0 229 333 103 83 chr4 97693796 97694000 -86594662 + L3 LINE CR1 196 403 -1174 202 56 56 0 chr4 97694316 97694352 -86594310 + (TA)n Simple_repeat Simple_repeat 2 39 0 275 244 35 12 chr4 97695747 97695833 -86592829 - MLT1H LTR MaLR -6 549 462 972 198 43 22 chr4 97695839 97696071 -86592591 - MER96B DNA MER1_type? -180 237 1 279 246 186 68 chr4 97696078 97696196 -86592466 - MLT1H LTR MaLR -135 414 283 493 286 48 0 chr4 97696463 97696610 -86592052 + MIR SINE MIR 109 262 0 261 139 0 0 chr4 97697036 97697079 -86591583 + (TG)n Simple_repeat Simple_repeat 1 43 0 3109 184 44 17 chr4 97697643 97698279 -86590383 + L1MC3 LINE L1 7133 7785 0 26 74 0 0 chr4 97698786 97698840 -86589822 + AT_rich Low_complexity Low_complexity 1 54 0 261 57 0 0 chr4 97699065 97699100 -86589562 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 1028 184 34 24 chr4 97699123 97699330 -86589332 + MER6B DNA MER2_type 2 210 0 211 291 73 0 chr4 97699629 97699684 -86588978 + L2 LINE L2 3214 3272 0 215 260 192 19 chr4 97699733 97699837 -86588825 - MIR SINE MIR -127 135 14 1895 217 44 22 chr4 97700882 97701339 -86587323 - MLT1C LTR MaLR 0 467 1 232 296 38 91 chr4 97702860 97702992 -86585670 + MIR SINE MIR 123 247 -15 242 265 231 17 chr4 97703192 97703309 -86585353 + L3 LINE CR1 1435 1576 -1 217 272 66 81 chr4 97703846 97703982 -86584680 - MIR3 SINE MIR -62 146 13 2386 75 0 7 chr4 97704838 97705146 -86583516 - AluY SINE Alu -5 306 1 395 372 91 26 chr4 97705187 97705418 -86583244 - MIR SINE MIR -12 250 5 24 32 0 0 chr4 97705465 97705496 -86583166 + AT_rich Low_complexity Low_complexity 1 31 0 2242 104 0 10 chr4 97706131 97706438 -86582224 - AluSg SINE Alu -6 304 1 21 0 0 0 chr4 97706823 97706844 -86581818 + AT_rich Low_complexity Low_complexity 1 21 0 216 325 36 12 chr4 97706988 97707071 -86581591 - MIR3 SINE MIR -18 190 106 411 350 77 0 chr4 97707810 97707953 -86580709 + MIR3 SINE MIR 24 177 -31 24 0 0 0 chr4 97709758 97709782 -86578880 + AT_rich Low_complexity Low_complexity 1 24 0 352 303 72 55 chr4 97710096 97710443 -86578219 - L1M4 LINE L1 -1338 4808 4456 34 0 0 0 chr4 97711489 97711523 -86577139 + AT_rich Low_complexity Low_complexity 1 34 0 3324 16 0 0 chr4 97711765 97712145 -86576517 - L1PA3 LINE L1 0 6155 5776 23 0 0 0 chr4 97713412 97713435 -86575227 + AT_rich Low_complexity Low_complexity 1 23 0 680 281 63 52 chr4 97714165 97714396 -86574266 - MIR SINE MIR -14 248 19 220 288 144 36 chr4 97714608 97714719 -86573943 - MIR SINE MIR -67 141 19 282 220 0 0 chr4 97717056 97717115 -86571547 + MIR SINE MIR 77 135 -73 4100 169 57 62 chr4 97718449 97719459 -86569203 - L1 LINE L1 -937 5209 4205 1400 163 106 78 chr4 97719900 97720298 -86568364 + L1MA7 LINE L1 5878 6286 -5 354 328 90 5 chr4 97720316 97720505 -86568157 - MIR SINE MIR -56 206 2 196 311 0 0 chr4 97721030 97721075 -86567587 + L2 LINE L2 3217 3261 -11 25 75 0 0 chr4 97721095 97721148 -86567514 + AT_rich Low_complexity Low_complexity 1 53 0 1756 93 0 37 chr4 97721728 97721974 -86566688 + AluSq SINE Alu 63 299 -14 802 228 64 32 chr4 97722448 97722698 -86565964 + MIR SINE MIR 4 261 -1 797 222 213 41 chr4 97724079 97724422 -86564240 - MLT1I LTR MaLR 0 409 8 936 98 0 0 chr4 97724948 97725101 -86563561 - AluSg/x SINE Alu 0 316 164 321 292 67 0 chr4 97725242 97725331 -86563331 - MIR3 SINE MIR -6 202 108 211 299 52 13 chr4 97725393 97725470 -86563192 + MIR SINE MIR 183 262 0 366 294 117 48 chr4 97726722 97727055 -86561607 - L1MC/D LINE L1 -2198 5610 5255 623 319 88 33 chr4 97727128 97728523 -86560139 - L1MC/D LINE L1 -979 5167 3696 22 0 0 0 chr4 97728624 97728646 -86560016 + AT_rich Low_complexity Low_complexity 1 22 0 48 43 0 0 chr4 97729226 97729295 -86559367 + AT_rich Low_complexity Low_complexity 1 69 0 22 0 0 0 chr4 97730200 97730222 -86558440 + AT_rich Low_complexity Low_complexity 1 22 0 752 246 67 54 chr4 97730314 97730538 -86558124 + MIR SINE MIR 2 228 -34 330 324 58 46 chr4 97731614 97731855 -86556807 + L3b LINE CR1 1326 1569 -14 1933 209 89 14 chr4 97731967 97732450 -86556212 - MLT2B1 LTR ERVL 0 520 2 194 301 151 11 chr4 97732988 97733081 -86555581 - L2 LINE L2 -5 3308 3203 261 311 135 7 chr4 97733462 97733610 -86555052 + MIR SINE MIR 96 262 0 333 256 47 0 chr4 97733780 97733866 -86554796 - L1MC4 LINE L1 -1339 6703 6614 * 365 278 0 0 chr4 97733826 97733916 -86554746 + L1MC4 LINE L1 6614 6703 -1339 697 266 44 32 chr4 97734230 97734476 -86554186 - MIR SINE MIR 0 262 19 774 323 54 6 chr4 97734753 97735106 -86553556 + MLT1I LTR MaLR 1 370 -39 349 176 33 22 chr4 97735883 97735974 -86552688 - L1MD3 LINE L1 -29 7966 7875 407 200 143 38 chr4 97736044 97736149 -86552513 + FLAM_A SINE Alu 1 116 -17 2172 79 41 3 chr4 97736164 97736454 -86552208 + AluSg SINE Alu 1 301 -9 1669 227 48 16 chr4 97736479 97736919 -86551743 - L1MC4a LINE L1 -121 7687 7234 647 228 60 0 chr4 97737800 97737949 -86550713 + MIR SINE MIR 91 248 -14 537 315 31 8 chr4 97737971 97738225 -86550437 - MIR SINE MIR 0 262 3 206 290 29 0 chr4 97738778 97738847 -86549815 + (TATATG)n Simple_repeat Simple_repeat 6 76 0 282 408 7 20 chr4 97739039 97739191 -86549471 - MIR3 SINE MIR -57 151 2 380 247 12 12 chr4 97739882 97739967 -86548695 + MER81 DNA DNA 4 88 -26 427 299 78 19 chr4 97740972 97741126 -86547536 + MIR3 SINE MIR 38 200 -8 435 183 24 0 chr4 97741587 97741669 -86546993 - MIR3 SINE MIR 0 208 125 20068 101 15 2 chr4 97741953 97745719 -86542943 - L1PA7 LINE L1 -4 6150 2342 237 287 21 11 chr4 97745756 97745850 -86542812 - HAL1 LINE L1 -111 2396 2302 792 256 34 23 chr4 97745858 97746124 -86542538 - HAL1 LINE L1 -721 1786 1518 349 165 8 124 chr4 97746262 97746383 -86542279 - MLT1D LTR MaLR -176 329 223 486 349 95 66 chr4 97746543 97746982 -86541680 - L2 LINE L2 0 3272 2804 366 188 0 175 chr4 97746982 97747039 -86541623 + MER94 DNA DNA 3 68 -66 2161 117 3 13 chr4 97747039 97747346 -86541316 + AluSx SINE Alu 3 306 -6 366 188 0 175 chr4 97747346 97747448 -86541214 + MER94 DNA DNA 68 134 0 486 349 95 66 chr4 97747448 97747836 -86540826 - L2 LINE L2 -468 2804 2429 2042 84 4 0 chr4 97748319 97748582 -86540080 + AluSc SINE Alu 1 264 -45 634 280 48 36 chr4 97749238 97749488 -86539174 + MIR SINE MIR 10 262 0 369 0 0 0 chr4 97749544 97749585 -86539077 + (CA)n Simple_repeat Simple_repeat 2 42 0 220 214 119 36 chr4 97749620 97749704 -86538958 - MIR SINE MIR -150 112 22 1550 151 57 0 chr4 97749811 97750056 -86538606 - AluSx SINE Alu -53 259 1 1548 276 77 21 chr4 97750222 97750744 -86537918 - MLT1G1 LTR MaLR -7 588 38 248 217 0 12 chr4 97750757 97750840 -86537822 + (TA)n Simple_repeat Simple_repeat 2 83 0 230 250 48 0 chr4 97750872 97750956 -86537706 + L1MC4 LINE L1 6616 6703 -1339 230 302 47 0 chr4 97750914 97751000 -86537662 - L1MC4 LINE L1 -1339 6703 6614 749 252 109 4 chr4 97751012 97751242 -86537420 + L2 LINE L2 3060 3313 0 22 0 0 0 chr4 97752315 97752337 -86536325 + AT_rich Low_complexity Low_complexity 1 22 0 801 270 27 27 chr4 97752653 97752912 -86535750 - MIR SINE MIR -1 261 3 223 325 132 0 chr4 97753160 97753274 -86535388 - MIR SINE MIR -126 136 8 679 233 11 23 chr4 97753276 97753452 -86535210 - MER5B DNA MER1_type -3 175 2 607 85 39 0 chr4 97754035 97754165 -86534497 + (TA)n Simple_repeat Simple_repeat 2 136 0 234 350 146 8 chr4 97755190 97755313 -86533349 + MIR SINE MIR 47 186 -76 694 229 67 17 chr4 97756623 97756802 -86531860 + MIR SINE MIR 75 262 0 21 57 0 0 chr4 97756802 97756837 -86531825 + AT_rich Low_complexity Low_complexity 1 35 0 193 369 12 12 chr4 97756878 97756962 -86531700 + L2 LINE L2 3189 3272 0 2333 57 3 0 chr4 97756979 97757296 -86531366 + AluY SINE Alu 1 318 0 2210 115 0 0 chr4 97757382 97757686 -86530976 - AluSq SINE Alu -8 305 2 500 274 108 27 chr4 97760889 97761112 -86527550 - MIR SINE MIR -13 249 9 183 255 28 132 chr4 97761794 97761900 -86526762 + L2 LINE L2 2122 2216 -1098 29 0 0 0 chr4 97762166 97762195 -86526467 + AT_rich Low_complexity Low_complexity 1 29 0 296 367 68 28 chr4 97763470 97763794 -86524868 + L2 LINE L2 1758 2094 -1220 1986 86 8 4 chr4 97765802 97766069 -86522593 - AluSx SINE Alu -1 311 44 284 295 52 69 chr4 97766137 97766310 -86522352 + L2 LINE L2 3144 3313 0 745 285 59 5 chr4 97766376 97766616 -86522046 - MIR SINE MIR -11 251 2 22 0 0 0 chr4 97768403 97768425 -86520237 + AT_rich Low_complexity Low_complexity 1 22 0 193 93 0 47 chr4 97768604 97768647 -86520015 + (TA)n Simple_repeat Simple_repeat 1 41 0 405 242 22 11 chr4 97768915 97769006 -86519656 + MIR3 SINE MIR 117 208 0 225 156 0 0 chr4 97769057 97769102 -86519560 + LTR66 LTR ERVL 394 438 -172 931 259 37 31 chr4 97769173 97769498 -86519164 + L2 LINE L2 2298 2624 -690 352 256 74 25 chr4 97769543 97769664 -86518998 + MER20 DNA MER1_type 44 170 -49 394 288 250 28 chr4 97769774 97770170 -86518492 + L2 LINE L2 2820 3303 -10 206 312 37 55 chr4 97770635 97770744 -86517918 + MER5B DNA MER1_type 72 178 0 22 35 0 0 chr4 97771371 97771400 -86517262 + AT_rich Low_complexity Low_complexity 1 29 0 351 136 0 0 chr4 97772707 97772766 -86515896 + (TTCC)n Simple_repeat Simple_repeat 2 60 0 2211 81 27 3 chr4 97773538 97773833 -86514829 + AluSq SINE Alu 1 302 -11 199 81 108 0 chr4 97773979 97774016 -86514646 - L2 LINE L2 0 3313 3273 1187 203 79 0 chr4 97775894 97776160 -86512502 - AluJo SINE Alu 0 312 26 344 156 66 8 chr4 97776493 97776615 -86512047 + (TA)n Simple_repeat Simple_repeat 1 129 0 183 250 0 0 chr4 97777032 97777084 -86511578 + GA-rich Low_complexity Low_complexity 2 53 0 6861 65 9 3 chr4 97777426 97778508 -86510154 - L1PA7 LINE L1 0 6154 5076 558 286 102 75 chr4 97779276 97779586 -86509076 - HAL1 LINE L1 -1385 1122 822 2131 117 7 7 chr4 97779586 97779895 -86508767 + AluSx SINE Alu 1 309 -3 558 286 102 75 chr4 97779895 97780345 -86508317 - HAL1 LINE L1 -1685 822 341 334 319 56 6 chr4 97781325 97781485 -86507177 + MIR SINE MIR 78 245 -17 406 302 34 20 chr4 97781682 97781831 -86506831 - MIR SINE MIR -76 186 36 409 295 54 36 chr4 97781862 97782028 -86506634 + L2 LINE L2 3137 3305 -8 2557 40 0 0 chr4 97782351 97782647 -86506015 + AluY SINE Alu 1 296 -15 930 236 43 0 chr4 97784096 97784304 -86504358 + MER20 DNA MER1_type 2 218 -1 349 296 100 65 chr4 97784576 97784806 -86503856 + MIR SINE MIR 2 239 -23 292 319 21 0 chr4 97787785 97787879 -86500783 - MIR3 SINE MIR -6 202 107 357 290 43 82 chr4 97789852 97790059 -86498603 + MIR3 SINE MIR 2 200 -8 184 246 0 72 chr4 97790208 97790277 -86498385 + MIR SINE MIR 129 192 -70 7746 22 2 2 chr4 97791012 97792178 -86496484 - L1PA3 LINE L1 0 6155 4990 9467 27 0 2 chr4 97792178 97793309 -86495353 + L1P LINE L1 3896 5024 -1122 4325 145 16 7 chr4 97796567 97797271 -86491391 + MER50 LTR ERV1 2 711 -23 254 367 13 0 chr4 97797342 97797421 -86491241 + MER5B DNA MER1_type 1 80 -98 2379 89 0 0 chr4 97799090 97799394 -86489268 - AluSc SINE Alu 0 309 6 310 333 72 52 chr4 97800443 97800791 -86487871 + HAL1b LINE L1 448 802 -546 225 132 0 0 chr4 97800925 97800963 -86487699 + (TA)n Simple_repeat Simple_repeat 2 39 0 196 317 0 17 chr4 97801172 97801232 -86487430 - MIR SINE MIR -113 95 37 400 286 18 18 chr4 97801334 97801445 -86487217 - MIR SINE MIR -50 212 101 987 202 86 14 chr4 97801539 97801975 -86486687 - MER34 LTR ERV1 0 542 27 366 274 57 30 chr4 97802383 97802601 -86486061 + L1ME4a LINE L1 4047 4269 -1877 736 296 116 23 chr4 97803136 97803652 -86485010 + L1ME4a LINE L1 5515 6078 -43 1881 128 4 0 chr4 97803709 97803974 -86484688 + AluSx SINE Alu 3 268 -44 229 49 0 49 chr4 97803981 97804022 -86484640 + (CAAAA)n Simple_repeat Simple_repeat 1 39 0 249 33 0 0 chr4 97804151 97804181 -86484481 + (TC)n Simple_repeat Simple_repeat 1 30 0 1451 159 116 0 chr4 97804183 97804459 -86484203 - AluJb SINE Alu -2 310 3 213 276 51 10 chr4 97804517 97804615 -86484047 + (GTATG)n Simple_repeat Simple_repeat 1 102 0 237 278 41 0 chr4 97804778 97804875 -86483787 - L1ME4a LINE L1 -176 5945 5845 229 216 0 0 chr4 97805633 97805684 -86482978 + A-rich Low_complexity Low_complexity 1 51 0 229 365 19 65 chr4 97805893 97806107 -86482555 - L3 LINE CR1 -355 1222 1019 237 191 43 0 chr4 97806668 97806715 -86481947 - MIR SINE MIR -10 252 204 30 0 0 0 chr4 97808687 97808717 -86479945 + AT_rich Low_complexity Low_complexity 1 30 0 549 308 50 20 chr4 97809518 97809716 -86478946 + MIR SINE MIR 48 251 -11 450 315 69 43 chr4 97809908 97810140 -86478522 + MIR SINE MIR 6 243 -19 21 36 0 0 chr4 97810164 97810192 -86478470 + AT_rich Low_complexity Low_complexity 1 28 0 1913 131 24 7 chr4 97810283 97810581 -86478081 + AluSx SINE Alu 1 303 -9 28 61 0 0 chr4 97811101 97811150 -86477512 + AT_rich Low_complexity Low_complexity 1 49 0 386 265 197 7 chr4 97811199 97811346 -86477316 - MIR SINE MIR -79 183 9 395 387 70 29 chr4 97811439 97811780 -86476882 + L1ME1 LINE L1 437 791 -5930 960 276 98 38 chr4 97812218 97812998 -86475664 + L1ME1 LINE L1 1015 1928 -4793 2495 57 0 3 chr4 97812998 97813298 -86475364 - AluY SINE Alu -12 299 1 960 276 98 38 chr4 97813298 97813695 -86474967 + L1ME1 LINE L1 1928 2300 -4421 2508 235 50 77 chr4 97813829 97815286 -86473376 + L1ME1 LINE L1 2358 3728 -2812 2219 111 0 3 chr4 97815286 97815583 -86473079 + AluSx SINE Alu 1 296 -16 2508 235 50 77 chr4 97815583 97815689 -86472973 + L1ME1 LINE L1 3728 3835 -2705 465 227 59 0 chr4 97815705 97815824 -86472838 + L1MC4a LINE L1 6099 6224 -1584 * 957 214 14 82 chr4 97815809 97816089 -86472573 + L1MC4a LINE L1 6446 6706 -1102 1542 194 84 112 chr4 97816091 97816699 -86471963 + L1ME1 LINE L1 5759 6349 -209 2867 192 41 92 chr4 97816729 97817488 -86471174 - MER50 LTR ERV1 -7 727 8 447 284 62 5 chr4 97817496 97817690 -86470972 + L1ME1 LINE L1 6351 6555 -5 447 235 75 31 chr4 97818256 97818444 -86470218 + MIR SINE MIR 30 229 -33 250 65 22 22 chr4 97819972 97820018 -86468644 + (TA)n Simple_repeat Simple_repeat 2 47 0 314 51 0 0 chr4 97821524 97821563 -86467099 + U2 snRNA snRNA 1 39 -149 846 198 90 0 chr4 97822340 97822507 -86466155 + MER20 DNA MER1_type 38 219 0 184 301 72 0 chr4 97823185 97823268 -86465394 + MIR SINE MIR 118 206 -56 403 305 61 18 chr4 97823284 97823448 -86465214 + MIR SINE MIR 18 188 -74 400 295 8 16 chr4 97823467 97823589 -86465073 + MER94 DNA DNA 14 134 0 344 203 105 68 chr4 97824138 97824271 -86464391 + MER117 DNA MER1_type 57 194 -3 2759 3 0 10 chr4 97824710 97825018 -86463644 - AluYa5 SINE Alu -6 305 1 207 154 19 19 chr4 97825894 97825946 -86462716 + (TA)n Simple_repeat Simple_repeat 2 53 0 388 235 68 62 chr4 97826150 97826312 -86462350 + MIR SINE MIR 36 198 -64 22 56 0 0 chr4 97826329 97826365 -86462297 + AT_rich Low_complexity Low_complexity 1 36 0 380 321 151 34 chr4 97826374 97826956 -86461706 - L2 LINE L2 -41 3272 2618 1599 230 75 65 chr4 97826991 97827574 -86461088 - MLT1E LTR MaLR -1 592 4 2101 113 7 0 chr4 97827659 97827959 -86460703 - AluY SINE Alu -9 302 1 677 158 12 28 chr4 97828248 97828498 -86460164 + GA-rich Low_complexity Low_complexity 1 246 0 1643 186 14 17 chr4 97828627 97828922 -86459740 + AluJo SINE Alu 5 298 -14 3148 102 7 18 chr4 97828927 97829377 -86459285 - MLT2A2 LTR ERVL -8 445 1 715 243 51 63 chr4 97829791 97830046 -86458616 - L2 LINE L2 -41 3272 3021 896 166 13 7 chr4 97830046 97830197 -86458465 + AluSx SINE Alu 3 154 -158 2007 108 7 0 chr4 97830200 97830469 -86458193 + AluSg1 SINE Alu 23 293 -16 2236 117 3 7 chr4 97830994 97831303 -86457359 - AluSx SINE Alu -4 308 1 425 291 129 52 chr4 97831383 97831692 -86456970 - MLT1H LTR MaLR -182 367 35 354 324 63 27 chr4 97831837 97832059 -86456603 + L1MC/D LINE L1 5259 5488 -2320 342 281 194 20 chr4 97832139 97832335 -86456327 + L2 LINE L2 2936 3165 -148 593 51 0 0 chr4 97832335 97832414 -86456248 - L1P LINE L1 -768 5404 5326 624 92 0 0 chr4 97832414 97832499 -86456163 + L1PA7 LINE L1 6063 6149 -5 463 281 68 7 chr4 97832533 97832679 -86455983 + L2 LINE L2 3159 3313 0 223 294 0 0 chr4 97832872 97832923 -86455739 - L2 LINE L2 0 3272 3222 23 33 0 0 chr4 97833235 97833265 -86455397 + AT_rich Low_complexity Low_complexity 1 30 0 1254 210 105 59 chr4 97834502 97834775 -86453887 + MLT1C LTR MaLR 1 303 -164 2107 152 57 14 chr4 97834775 97835124 -86453538 + THE1B LTR MaLR 1 364 0 1254 210 105 59 chr4 97835124 97835289 -86453373 + MLT1C LTR MaLR 303 459 -8 2007 111 4 0 chr4 97837045 97837325 -86451337 + AluSg1 SINE Alu 1 281 -28 234 0 0 0 chr4 97837325 97837351 -86451311 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 23 0 0 0 chr4 97837351 97837374 -86451288 + AT_rich Low_complexity Low_complexity 1 23 0 262 127 109 0 chr4 97839011 97839066 -86449596 + MLT1A1 LTR MaLR 1 61 -304 1482 179 55 0 chr4 97839168 97839441 -86449221 + MLT1A1 LTR MaLR 61 348 -17 844 317 21 18 chr4 97839584 97839918 -86448744 + LTR16B LTR ERVL 124 458 -6 813 208 24 0 chr4 97840030 97840198 -86448464 - MSTD LTR MaLR -222 174 3 200 358 102 15 chr4 97841191 97841328 -86447334 - MIR SINE MIR -61 201 53 2344 143 36 24 chr4 97841856 97842277 -86446385 + MSTB1 LTR MaLR 7 432 0 698 259 29 35 chr4 97843108 97843424 -86445238 + L1M4 LINE L1 4454 4767 -1379 * 1333 269 40 35 chr4 97843417 97843645 -86445017 + L1ME1 LINE L1 4632 4857 -1289 1991 215 33 73 chr4 97843645 97844222 -86444440 + MLT2B3 LTR ERVL 1 554 0 1333 269 40 35 chr4 97844222 97844600 -86444062 + L1ME1 LINE L1 4857 5241 -905 2495 232 61 15 chr4 97844614 97845407 -86443255 + L1ME1 LINE L1 5298 6158 -8 227 343 81 25 chr4 97845798 97845996 -86442666 - Charlie8 DNA MER1_type -2199 218 10 29 28 0 0 chr4 97846079 97846115 -86442547 + AT_rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr4 97846377 97846411 -86442251 + AT_rich Low_complexity Low_complexity 1 34 0 21 95 0 0 chr4 97846486 97846549 -86442113 + AT_rich Low_complexity Low_complexity 1 63 0 31 44 0 0 chr4 97846903 97846948 -86441714 + AT_rich Low_complexity Low_complexity 1 45 0 398 326 203 4 chr4 97848900 97849183 -86439479 - L2 LINE L2 -186 3127 2791 242 182 0 0 chr4 97850818 97850862 -86437800 + L1MCa LINE L1 277 320 -6106 1403 232 102 5 chr4 97850880 97851272 -86437390 + L1M4 LINE L1 3952 4381 -1765 7328 163 19 21 chr4 97851281 97852465 -86436197 + L1M3f LINE L1 3 1189 -4433 2050 121 0 45 chr4 97852465 97852779 -86435883 + AluSg SINE Alu 1 300 -10 7328 163 19 21 chr4 97852779 97853111 -86435551 + L1M3f LINE L1 1189 1529 -4093 3154 44 91 2 chr4 97853111 97853551 -86435111 + L1PA7 LINE L1 5693 6168 0 7328 163 19 21 chr4 97853551 97853574 -86435088 + L1M3f LINE L1 1529 1551 -4071 2748 110 0 0 chr4 97853896 97854260 -86434402 + THE1B LTR MaLR 1 364 0 2802 25 0 0 chr4 97854835 97855158 -86433504 + L1PA4 LINE L1 5827 6149 -6 506 384 62 30 chr4 97855301 97856062 -86432600 - L2 LINE L2 -1694 1620 836 351 259 165 19 chr4 97857505 97857663 -86430999 + LTR67 LTR ERVL 375 555 -2 25 31 0 0 chr4 97859241 97859273 -86429389 + AT_rich Low_complexity Low_complexity 1 32 0 423 0 0 0 chr4 97859621 97859668 -86428994 + (CA)n Simple_repeat Simple_repeat 2 48 0 543 319 46 0 chr4 97859840 97860056 -86428606 + MIR SINE MIR 22 247 -15 429 316 33 0 chr4 97860109 97860261 -86428401 + MIR SINE MIR 37 193 -69 2219 153 85 18 chr4 97860684 97861082 -86427580 - MSTB LTR MaLR 0 426 2 427 273 38 8 chr4 97861811 97861943 -86426719 - L2 LINE L2 0 3313 3178 515 277 94 19 chr4 97862708 97862964 -86425698 + MLT1L LTR MaLR 105 379 -236 385 231 82 15 chr4 97863008 97863142 -86425520 + MLT1L LTR MaLR 473 615 0 566 326 72 25 chr4 97863142 97863378 -86425284 + MIR SINE MIR 14 260 -2 252 257 43 0 chr4 97863601 97863671 -86424991 + Charlie8 DNA MER1_type 47 119 -2298 2526 47 0 0 chr4 97863950 97864247 -86424415 + AluY SINE Alu 1 297 -14 527 210 154 25 chr4 97864467 97864651 -86424011 + MIR SINE MIR 51 256 -6 522 0 0 0 chr4 97864878 97864936 -86423726 + (TAAAA)n Simple_repeat Simple_repeat 4 61 0 491 242 18 3 chr4 97865229 97865572 -86423090 + GA-rich Low_complexity Low_complexity 1 348 0 1071 153 0 12 chr4 97865718 97865888 -86422774 - AluJb SINE Alu -143 169 2 11416 154 34 33 chr4 97866213 97867075 -86421587 - L1MA9 LINE L1 -2 6310 5451 2349 91 3 0 chr4 97867075 97867382 -86421280 - AluSg SINE Alu -2 308 1 11416 154 34 33 chr4 97867382 97867739 -86420923 - L1MA9 LINE L1 -861 5451 5096 2264 89 7 7 chr4 97867739 97868032 -86420630 - AluSq SINE Alu -20 293 1 11416 154 34 33 chr4 97868032 97870258 -86418404 - L1MA9 LINE L1 -1216 5096 2860 23 33 0 0 chr4 97870685 97870715 -86417947 + AT_rich Low_complexity Low_complexity 1 30 0 2412 39 13 35 chr4 97871979 97872291 -86416371 - AluY SINE Alu -6 305 1 180 0 0 0 chr4 97873036 97873056 -86415606 + (TATAA)n Simple_repeat Simple_repeat 5 24 0 1041 74 0 0 chr4 97873395 97873530 -86415132 - AluSc SINE Alu -3 306 172 194 307 119 50 chr4 97873535 97873838 -86414824 + L2 LINE L2 1384 1707 -1607 332 266 92 9 chr4 97874521 97874630 -86414032 - MIR SINE MIR -76 186 69 510 285 188 7 chr4 97874632 97874920 -86413742 + L2 LINE L2 2198 2537 -777 1485 198 95 43 chr4 97876295 97876433 -86412229 + L1MB7 LINE L1 5686 5815 -369 2105 110 6 28 chr4 97876433 97876751 -86411911 + AluSx SINE Alu 2 312 0 1485 198 95 43 chr4 97876751 97877077 -86411585 + L1MB7 LINE L1 5815 6174 -10 1840 137 2 117 chr4 97877708 97878109 -86410553 - MLT1A1 LTR MaLR -10 355 1 1058 230 171 29 chr4 97878637 97879011 -86409651 - MLT1G LTR MaLR -144 446 20 256 379 54 49 chr4 97879517 97879720 -86408942 - L2 LINE L2 -12 3260 3057 421 356 88 56 chr4 97879977 97880445 -86408217 - L2 LINE L2 -4 3268 2770 1957 130 37 3 chr4 97880445 97880745 -86407917 - AluSx SINE Alu -2 310 1 421 356 88 56 chr4 97880745 97881018 -86407644 - L2 LINE L2 -502 2770 2507 405 86 0 0 chr4 97882706 97882764 -86405898 + (TCCA)n Simple_repeat Simple_repeat 2 59 0 462 232 152 0 chr4 97882768 97882880 -86405782 - L2 LINE L2 0 3272 3144 411 259 130 31 chr4 97882880 97883042 -86405620 - MER5B DNA MER1_type 0 178 1 24 0 0 0 chr4 97883073 97883097 -86405565 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr4 97883217 97883245 -86405417 + AT_rich Low_complexity Low_complexity 1 28 0 2379 94 0 0 chr4 97883503 97883812 -86404850 - AluSc SINE Alu 0 309 1 533 306 107 15 chr4 97884336 97884663 -86403999 + MLT1J LTR MaLR 63 419 -31 261 338 52 66 chr4 97884757 97884893 -86403769 + L2 LINE L2 2918 3051 -221 438 293 48 84 chr4 97884979 97885084 -86403578 - MIR SINE MIR -14 248 141 1400 186 19 62 chr4 97885084 97885407 -86403255 - AluJo SINE Alu -3 309 1 438 293 48 84 chr4 97885407 97885550 -86403112 - MIR SINE MIR -121 141 9 1620 160 91 22 chr4 97885855 97886217 -86402445 - MLT1B LTR MaLR -3 387 1 625 276 79 22 chr4 97886293 97886521 -86402141 + MIR SINE MIR 8 248 -14 24 0 0 0 chr4 97886539 97886563 -86402099 + AT_rich Low_complexity Low_complexity 1 24 0 194 299 19 96 chr4 97887304 97887461 -86401201 + MIR SINE MIR 68 212 -50 2095 126 64 14 chr4 97887604 97887961 -86400701 + THE1C LTR MaLR 1 375 0 196 51 26 26 chr4 97887994 97888033 -86400629 + (TTTTTA)n Simple_repeat Simple_repeat 2 40 0 4485 59 19 2 chr4 97888074 97888650 -86400012 - L1PA5 LINE L1 -6 6148 5563 414 308 47 35 chr4 97888826 97888995 -86399667 + MIR SINE MIR 20 190 -72 207 209 0 0 chr4 97889035 97889078 -86399584 + (TTA)n Simple_repeat Simple_repeat 2 44 0 191 170 21 0 chr4 97889230 97889277 -86399385 + GA-rich Low_complexity Low_complexity 2 49 0 252 0 0 0 chr4 97889555 97889583 -86399079 + (TG)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr4 97890114 97890136 -86398526 + AT_rich Low_complexity Low_complexity 1 22 0 1430 204 35 84 chr4 97890495 97890807 -86397855 - L1ME1 LINE L1 -5 6161 5878 1597 188 32 0 chr4 97890807 97891089 -86397573 - AluJb SINE Alu -20 292 2 1430 204 35 84 chr4 97891089 97891238 -86397424 - L1ME1 LINE L1 -288 5878 5723 264 276 157 15 chr4 97891332 97891466 -86397196 + L2 LINE L2 3161 3313 0 196 167 33 33 chr4 97892436 97892556 -86396106 + (TA)n Simple_repeat Simple_repeat 1 120 0 245 183 0 13 chr4 97892584 97892661 -86396001 + L1MC4 LINE L1 2006 6981 -1341 232 308 0 22 chr4 97892651 97892742 -86395920 - L1MC4 LINE L1 -1340 6702 6614 * 447 250 0 0 chr4 97892743 97892875 -86395787 + (TA)n Simple_repeat Simple_repeat 1 132 0 536 264 4 0 chr4 97892962 97893225 -86395437 + (TA)n Simple_repeat Simple_repeat 1 264 0 227 267 0 47 chr4 97893226 97893312 -86395350 + L1MC4 LINE L1 6614 6695 -1347 531 268 0 0 chr4 97893315 97893588 -86395074 + (TA)n Simple_repeat Simple_repeat 1 273 0 708 222 0 0 chr4 97893601 97893781 -86394881 + (TA)n Simple_repeat Simple_repeat 1 180 0 256 223 0 53 chr4 97893803 97893897 -86394765 - L1MC4 LINE L1 -1339 6703 6615 243 233 35 0 chr4 97894127 97894213 -86394449 + L1MC4 LINE L1 6615 6703 -1339 3147 104 22 2 chr4 97894249 97894709 -86393953 - L1PB2 LINE L1 -2 6149 5681 230 289 92 0 chr4 97894733 97894809 -86393853 + MIR SINE MIR 79 161 -101 424 273 57 8 chr4 97894862 97895016 -86393646 - MIR SINE MIR -36 172 17 272 27 27 0 chr4 97896762 97896799 -86391863 + (TG)n Simple_repeat Simple_repeat 2 39 0 323 225 139 47 chr4 97897089 97897218 -86391444 - MIR SINE MIR 0 262 122 1835 158 39 99 chr4 97897352 97897788 -86390874 + MLT2D LTR ERVL 1 410 -4 2243 122 0 0 chr4 97898012 97898324 -86390338 - AluSp SINE Alu -1 312 1 2078 117 0 0 chr4 97899330 97899613 -86389049 + AluSx SINE Alu 1 283 -29 351 0 0 0 chr4 97899616 97899655 -86389007 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 230 91 0 0 chr4 97899883 97899916 -86388746 - tRNA-Arg-AGA tRNA tRNA -42 34 2 222 37 0 0 chr4 97900057 97900084 -86388578 + (TTCC)n Simple_repeat Simple_repeat 2 28 0 1638 273 109 2 chr4 97900185 97900690 -86387972 + Zaphod DNA AcHobo 30 588 -3443 1082 239 31 24 chr4 97900687 97900980 -86387682 + Zaphod DNA AcHobo 3737 4031 0 * 232 280 60 20 chr4 97901145 97901245 -86387417 - L1ME LINE L1 -376 5786 5683 242 340 81 25 chr4 97901263 97901460 -86387202 - L1ME LINE L1 -537 5584 5377 450 332 101 12 chr4 97901472 97902213 -86386449 - L1ME LINE L1 -842 5304 4498 472 282 69 75 chr4 97902278 97902640 -86386022 - HAL1 LINE L1 -1245 1262 903 567 339 54 17 chr4 97902747 97903194 -86385468 - L2 LINE L2 -142 3171 2709 245 240 80 10 chr4 97903211 97903311 -86385351 - L1MC4a LINE L1 0 7808 7702 1943 135 24 0 chr4 97903459 97903748 -86384914 - AluJb SINE Alu -16 296 1 1805 249 75 18 chr4 97903771 97904334 -86384328 - L1ME2 LINE L1 -19 6145 5551 2067 129 0 0 chr4 97904678 97904958 -86383704 - AluSc SINE Alu -29 280 1 2928 89 25 0 chr4 97904983 97905375 -86383287 - MLT2A1 LTR ERVL -2 442 41 17624 68 4 5 chr4 97905489 97907714 -86380948 - HERVL-A1 LTR ERVL -75 5579 3358 3098 67 20 0 chr4 97907725 97908115 -86380547 - MLT2A1 LTR ERVL -44 400 3 1384 142 9 5 chr4 97908338 97908550 -86380112 - AluJb SINE Alu -15 297 85 1545 234 89 27 chr4 97908633 97909151 -86379511 - L1MC5 LINE L1 -449 7512 6963 973 170 259 8 chr4 97910712 97910971 -86377691 + MER5C DNA MER1_type 1 324 0 4788 193 40 26 chr4 97911062 97913131 -86375531 - L1MB7 LINE L1 -19 6165 4067 273 361 76 6 chr4 97913567 97913725 -86374937 - L3 LINE CR1 -2 1575 1407 13973 147 20 104 chr4 97917597 97920675 -86367987 + L1PA8 LINE L1 2 2738 -3408 2227 132 0 0 chr4 97920675 97920985 -86367677 + AluSg SINE Alu 1 310 0 13973 147 20 104 chr4 97920985 97921474 -86367188 + L1PA8 LINE L1 2738 3267 -2879 * 41818 45 1 4 chr4 97921471 97927641 -86361021 + L1PA4 LINE L1 2 6155 0 13360 87 13 18 chr4 97927624 97928605 -86360057 + L1PA8 LINE L1 3248 4232 -1946 * 2122 119 3 0 chr4 97928605 97928900 -86359762 + AluSp SINE Alu 1 296 -17 13360 87 13 18 chr4 97928900 97930094 -86358568 + L1PA8 LINE L1 4232 5412 -766 2138 103 0 7 chr4 97930094 97930404 -86358258 + AluY SINE Alu 1 308 0 13360 87 13 18 chr4 97930404 97931168 -86357494 + L1PA8 LINE L1 5412 6178 0 855 226 21 45 chr4 97931169 97931456 -86357206 + L1ME1 LINE L1 5606 5885 -281 231 36 0 0 chr4 97931565 97931593 -86357069 + (TG)n Simple_repeat Simple_repeat 1 28 0 10476 152 33 43 chr4 97931738 97932274 -86356388 + Ricksha_c DNA DNA 26 566 -2700 1978 121 38 3 chr4 97932274 97932564 -86356098 - AluSx SINE Alu -12 300 1 10476 152 33 43 chr4 97932564 97933588 -86355074 + Ricksha_c DNA DNA 566 1599 -1667 2379 97 0 0 chr4 97933588 97933887 -86354775 + AluSg SINE Alu 1 299 -11 10476 152 33 43 chr4 97933887 97934009 -86354653 + Ricksha_c DNA DNA 1599 1721 -1545 6759 170 13 12 chr4 97934009 97936123 -86352539 - L1PA14 LINE L1 -9 6152 4041 10476 152 33 43 chr4 97936123 97936146 -86352516 + Ricksha_c DNA DNA 1721 1743 -1523 207 100 0 0 chr4 97936146 97936176 -86352486 + (TCTG)n Simple_repeat Simple_repeat 4 33 0 2189 101 3 0 chr4 97936176 97936462 -86352200 - AluSx SINE Alu -25 287 1 10476 152 33 43 chr4 97936462 97936633 -86352029 + Ricksha_c DNA DNA 1742 1835 -1431 1648 158 48 4 chr4 97936633 97936906 -86351756 + AluSx SINE Alu 1 285 -27 10476 152 33 43 chr4 97936906 97937115 -86351547 + Ricksha_c DNA DNA 1835 2045 -13 2652 179 46 36 chr4 97937185 97937817 -86350845 - L1MC2 LINE L1 -3 6341 5704 1284 113 33 0 chr4 97938125 97938338 -86350324 - L1MA2 LINE L1 -85 6219 6000 298 275 88 0 chr4 97938344 97938424 -86350238 + L2 LINE L2 3226 3312 -1 22 56 0 0 chr4 97939617 97939653 -86349009 + AT_rich Low_complexity Low_complexity 1 36 0 182 322 51 0 chr4 97939660 97939719 -86348943 - L2 LINE L2 0 3313 3252 361 359 81 40 chr4 97939809 97940416 -86348246 - L2 LINE L2 -183 3089 2455 555 275 39 83 chr4 97940416 97940754 -86347908 - LTR16C LTR ERVL -2 489 167 532 304 116 40 chr4 97940948 97941065 -86347597 - L2 LINE L2 -979 2335 2228 2047 133 67 29 chr4 97941065 97941441 -86347221 - MLT1B LTR MaLR 0 390 1 532 304 116 40 chr4 97941441 97941701 -86346961 - L2 LINE L2 -1086 2228 1929 359 314 32 39 chr4 97943444 97943600 -86345062 - L2 LINE L2 -1420 1894 1740 665 269 116 59 chr4 97943600 97943699 -86344963 - L2 LINE L2 -1476 1838 1746 2076 163 53 31 chr4 97943699 97944154 -86344508 - MLT1C LTR MaLR -2 465 1 665 269 116 59 chr4 97944154 97944478 -86344184 - L2 LINE L2 -1568 1746 1391 761 148 30 12 chr4 97944482 97944651 -86344011 + CT-rich Low_complexity Low_complexity 1 172 0 276 149 0 0 chr4 97944683 97944730 -86343932 + (TTCC)n Simple_repeat Simple_repeat 4 50 0 1712 192 3 16 chr4 97944744 97945052 -86343610 - AluJo SINE Alu -8 304 1 302 259 49 0 chr4 97945202 97945283 -86343379 - MIR SINE MIR -11 251 167 21 57 0 0 chr4 97946835 97946870 -86341792 + AT_rich Low_complexity Low_complexity 1 35 0 209 184 26 0 chr4 97949150 97949188 -86339474 + GA-rich Low_complexity Low_complexity 5 43 0 2339 92 0 3 chr4 97949780 97950074 -86338588 + AluSx SINE Alu 1 293 -19 204 404 9 0 chr4 97950645 97950754 -86337908 + MIR3 SINE MIR 78 187 -21 272 245 19 85 chr4 97950945 97951051 -86337611 - MIR SINE MIR -56 206 108 180 314 76 51 chr4 97951391 97951509 -86337153 + L2 LINE L2 2916 3036 -236 1483 228 25 23 chr4 97951957 97952181 -86336481 - L1MC4a LINE L1 -972 6836 6614 576 0 0 0 chr4 97952181 97952245 -86336417 + (TC)n Simple_repeat Simple_repeat 2 65 0 243 0 0 0 chr4 97952244 97952271 -86336391 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 1483 228 25 23 chr4 97952245 97952440 -86336222 - L1MC4a LINE L1 -1194 6614 6442 240 326 11 11 chr4 97953380 97953472 -86335190 - MIR3 SINE MIR -26 182 91 24 53 0 0 chr4 97953587 97953625 -86335037 + AT_rich Low_complexity Low_complexity 1 38 0 1569 164 40 43 chr4 97953686 97953990 -86334672 + 7SLRNA srpRNA srpRNA 1 303 -17 186 43 0 0 chr4 97953990 97954013 -86334649 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1158 114 5 10 chr4 97954034 97954227 -86334435 - Tigger4(Zombi) DNA MER2_type -17 2714 2523 677 156 25 8 chr4 97954221 97954343 -86334319 - Tigger4(Zombi) DNA MER2_type -2607 124 1 * 2005 147 3 0 chr4 97954630 97954922 -86333740 - AluSx SINE Alu -19 293 1 505 273 165 57 chr4 97955259 97955684 -86332978 - L3 LINE CR1 -14 1563 1093 2702 90 2 24 chr4 97955761 97956173 -86332489 - MER4A LTR ERV1 -1 663 261 500 172 0 10 chr4 97956173 97956272 -86332390 - MER4A LTR ERV1 -566 98 1 204 238 0 48 chr4 97956941 97957025 -86331637 + (CAGAGA)n Simple_repeat Simple_repeat 3 82 0 * 206 222 0 0 chr4 97956983 97957028 -86331634 + (CAGA)n Simple_repeat Simple_repeat 3 47 0 2139 107 10 0 chr4 97959870 97960159 -86328503 - AluSp SINE Alu -21 292 1 316 305 106 20 chr4 97961695 97961846 -86326816 + L2 LINE L2 2689 2852 -462 228 333 121 20 chr4 97961905 97962004 -86326658 + L2 LINE L2 3008 3116 -156 209 292 15 15 chr4 97962164 97962229 -86326433 + L2 LINE L2 3205 3269 -3 251 297 0 31 chr4 97962264 97962328 -86326334 - L2 LINE L2 -99 3173 3112 1011 39 78 0 chr4 97962360 97962488 -86326174 + MER85 DNA T2_type 1 138 -1 746 262 78 0 chr4 97963511 97963717 -86324945 - MIR SINE MIR 0 262 41 2490 73 0 0 chr4 97963952 97964255 -86324407 + AluY SINE Alu 1 303 -8 482 319 17 62 chr4 97966031 97966272 -86322390 + MIR SINE MIR 3 232 -30 212 303 13 40 chr4 97966226 97966302 -86322360 - MIR SINE MIR 0 262 189 * 230 266 47 0 chr4 97966365 97966429 -86322233 + MIR SINE MIR 195 261 -1 460 335 63 8 chr4 97967454 97967693 -86320969 - MIR SINE MIR 0 262 11 600 323 84 45 chr4 97968301 97968989 -86319673 + L2 LINE L2 1802 2516 -798 386 317 35 0 chr4 97969011 97969153 -86319509 + MIR SINE MIR 100 246 -16 18657 96 12 4 chr4 97969264 97972787 -86315875 - L1PA7 LINE L1 -3 6151 2612 2169 130 0 0 chr4 97972799 97973100 -86315562 - AluSx SINE Alu -11 301 1 389 314 24 118 chr4 97973173 97973397 -86315265 + L2 LINE L2 2926 3101 -171 2384 67 0 10 chr4 97973397 97973697 -86314965 - AluY SINE Alu -14 297 1 389 314 24 118 chr4 97973697 97973854 -86314808 + L2 LINE L2 3101 3271 -1 488 293 7 0 chr4 97974106 97974246 -86314416 - L2 LINE L2 -1367 1947 1807 1627 157 86 8 chr4 97975173 97975441 -86313221 - AluJb SINE Alu -23 289 1 853 179 22 0 chr4 97975682 97975861 -86312801 - Charlie1 DNA MER1_type -4 2757 2575 2457 60 0 0 chr4 97975861 97976161 -86312501 - AluY SINE Alu -11 300 1 401 206 19 9 chr4 97976709 97976816 -86311846 - L1ME4a LINE L1 -22 6099 5992 321 207 0 0 chr4 97976988 97977070 -86311592 + (TG)n Simple_repeat Simple_repeat 2 83 0 282 143 0 0 chr4 97977333 97977382 -86311280 + (TA)n Simple_repeat Simple_repeat 1 49 0 249 184 20 0 chr4 97977891 97977940 -86310722 + L2 LINE L2 3264 3313 0 2242 108 0 0 chr4 97978131 97978428 -86310234 - AluSc SINE Alu -12 297 1 779 144 23 0 chr4 97978432 97978564 -86310098 - L1PB4 LINE L1 -1 6155 6021 259 362 183 27 chr4 97979099 97979323 -86309339 + L2 LINE L2 3014 3272 0 181 300 0 0 chr4 97979616 97979666 -86308996 + MIR SINE MIR 45 94 -114 579 271 26 36 chr4 97980120 97980312 -86308350 - MLT1K LTR MaLR 0 588 399 1683 134 19 31 chr4 97980889 97981231 -86307431 - MER61B LTR ERV1 0 425 1 342 102 0 0 chr4 97981704 97981753 -86306909 - MLT2B1 LTR ERVL -7 513 465 285 157 0 63 chr4 97981805 97981996 -86306666 + (TA)n Simple_repeat Simple_repeat 1 179 0 605 236 3 0 chr4 97982015 97982366 -86306296 + (TA)n Simple_repeat Simple_repeat 1 352 0 1567 185 121 62 chr4 97982366 97982819 -86305843 - MLT2B1 LTR ERVL -40 480 1 1475 127 154 61 chr4 97982848 97983178 -86305484 - MER31B LTR ERV1 -105 361 1 665 291 29 16 chr4 97984438 97984682 -86303980 + MER112 DNA MER1_type 3 249 -11 181 296 9 104 chr4 97984705 97984820 -86303842 - MIR3 SINE MIR -2 206 103 1719 167 40 35 chr4 97985428 97985800 -86302862 - MLT1A2 LTR MaLR 0 374 1 21 57 0 0 chr4 97986191 97986226 -86302436 + AT_rich Low_complexity Low_complexity 1 35 0 1304 270 78 56 chr4 97987692 97988777 -86299885 - L2 LINE L2 0 3313 2201 1803 165 7 0 chr4 97988777 97989074 -86299588 + AluJo SINE Alu 1 299 -13 1304 270 78 56 chr4 97989074 97989125 -86299537 - L2 LINE L2 -1112 2201 2153 885 230 60 25 chr4 97989263 97989498 -86299164 - MIR SINE MIR -1 261 19 867 237 109 5 chr4 97989742 97989953 -86298709 + MIR SINE MIR 1 233 -29 469 177 282 0 chr4 97990525 97990649 -86298013 + MIR SINE MIR 79 237 -25 298 341 125 17 chr4 97991101 97991277 -86297385 - MIR3 SINE MIR -5 203 9 834 296 78 0 chr4 97991334 97991577 -86297085 - MIR SINE MIR 0 262 1 604 202 32 0 chr4 97991659 97991783 -86296879 + MIR SINE MIR 124 251 -11 309 328 104 79 chr4 97992189 97992592 -86296070 - L2 LINE L2 -4 3268 2856 198 150 0 0 chr4 97993408 97993448 -86295214 + (TG)n Simple_repeat Simple_repeat 1 40 0 803 294 61 0 chr4 97993651 97993879 -86294783 + MIR SINE MIR 1 242 -20 186 289 167 11 chr4 97994150 97994240 -86294422 - MIR SINE MIR -55 153 50 * 231 167 0 37 chr4 97994239 97994293 -86294369 - L2 LINE L2 0 3313 3262 198 0 0 0 chr4 97995546 97995568 -86293094 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 226 206 27 41 chr4 97995863 97995936 -86292726 + GA-rich Low_complexity Low_complexity 4 75 0 343 373 17 18 chr4 97996165 97996347 -86292315 - MIR3 SINE MIR -34 174 31 21 82 0 0 chr4 97996349 97996398 -86292264 + AT_rich Low_complexity Low_complexity 1 49 0 285 284 28 18 chr4 97998806 97998915 -86289747 - MIR SINE MIR -2 260 151 337 286 12 0 chr4 97999407 97999491 -86289171 - MIR SINE MIR -115 147 63 375 329 92 4 chr4 97999818 98000058 -86288604 - MIR SINE MIR 0 262 2 448 319 183 7 chr4 98001040 98001319 -86287343 - L2 LINE L2 0 3313 2986 597 251 85 5 chr4 98001321 98001520 -86287142 + HAL1 LINE L1 1415 1629 -878 3329 203 47 9 chr4 98001622 98002494 -86286168 + Zaphod DNA AcHobo 3117 4021 -10 271 295 0 0 chr4 98003132 98003193 -86285469 - L2 LINE L2 -4 3309 3249 233 229 0 100 chr4 98003360 98003430 -86285232 - HAL1 LINE L1 -1679 828 766 825 316 126 40 chr4 98003495 98004068 -86284594 - HAL1 LINE L1 -1883 624 3 1701 177 13 16 chr4 98004725 98005030 -86283632 - AluJo SINE Alu -8 304 1 884 233 44 31 chr4 98005206 98005434 -86283228 - MIR SINE MIR -30 232 2 27 29 0 0 chr4 98005577 98005611 -86283051 + AT_rich Low_complexity Low_complexity 1 34 0 417 210 12 0 chr4 98005620 98005701 -86282961 - FRAM SINE Alu -84 92 11 251 411 50 5 chr4 98005969 98006188 -86282474 + MIR SINE MIR 23 251 -11 614 125 20 145 chr4 98006969 98007121 -86281541 + FLAM_C SINE Alu 1 133 0 318 149 126 58 chr4 98007483 98007570 -86281092 - L1MC4 LINE L1 -1338 6704 6612 515 231 72 66 chr4 98007596 98007919 -86280743 - L1ME LINE L1 -537 5625 5299 1696 172 38 123 chr4 98007919 98008449 -86280213 - MER31A LTR ERV1 0 485 1 515 231 72 66 chr4 98008449 98008613 -86280049 - L1ME LINE L1 -863 5299 5137 347 261 251 57 chr4 98008620 98008954 -86279708 - L1ME LINE L1 -1208 4938 4540 442 318 90 11 chr4 98009001 98009356 -86279306 - L1ME LINE L1 -1709 4437 4055 332 270 189 7 chr4 98009670 98009818 -86278844 + MIR SINE MIR 33 207 -55 2393 167 38 36 chr4 98010329 98010862 -86277800 - L1MA7 LINE L1 -10 6281 5748 14824 135 24 5 chr4 98012279 98014629 -86274033 - Tigger1 DNA MER2_type -23 2395 1 334 344 62 31 chr4 98015538 98015733 -86272929 - MIR SINE MIR -39 223 23 21 0 0 0 chr4 98016638 98016659 -86272003 + AT_rich Low_complexity Low_complexity 1 21 0 252 86 0 0 chr4 98017001 98017036 -86271626 + (CA)n Simple_repeat Simple_repeat 1 35 0 255 328 17 42 chr4 98018177 98018296 -86270366 - L2 LINE L2 -19 3253 3138 1125 203 54 8 chr4 98018314 98018556 -86270106 + L1PB4 LINE L1 5901 6153 -3 531 365 20 4 chr4 98018582 98018826 -86269836 - L2 LINE L2 -201 3112 2865 436 277 80 7 chr4 98019335 98019472 -86269190 + MIR SINE MIR 24 170 -92 2151 110 0 0 chr4 98019639 98019944 -86268718 + AluY SINE Alu 1 305 0 24 0 0 0 chr4 98020049 98020073 -86268589 + AT_rich Low_complexity Low_complexity 1 24 0 252 273 109 36 chr4 98020391 98020501 -86268161 - L2 LINE L2 0 3272 3155 821 210 68 6 chr4 98020522 98020698 -86267964 + MIR SINE MIR 51 237 -25 651 324 125 11 chr4 98022308 98022749 -86265913 - LTR33 LTR ERVL -23 498 8 941 330 35 24 chr4 98022959 98023504 -86265158 - ERVL LTR ERVL -365 5399 4849 31030 108 6 34 chr4 98023506 98029461 -86259201 - L1PA7 LINE L1 0 6154 377 227 343 81 25 chr4 98029572 98029770 -86258892 - Charlie8 DNA MER1_type -2199 218 10 30 27 0 0 chr4 98029853 98029890 -86258772 + AT_rich Low_complexity Low_complexity 1 37 0 27 29 0 0 chr4 98030151 98030185 -86258477 + AT_rich Low_complexity Low_complexity 1 34 0 21 95 0 0 chr4 98030260 98030323 -86258339 + AT_rich Low_complexity Low_complexity 1 63 0 31 44 0 0 chr4 98030677 98030722 -86257940 + AT_rich Low_complexity Low_complexity 1 45 0 429 319 203 4 chr4 98032673 98032956 -86255706 - L2 LINE L2 -186 3127 2791 242 182 0 0 chr4 98034591 98034635 -86254027 + L1MCa LINE L1 277 320 -6106 1403 232 102 5 chr4 98034653 98035045 -86253617 + L1M4 LINE L1 3952 4381 -1765 14032 183 30 21 chr4 98035054 98036238 -86252424 + L1MA4 LINE L1 3 1175 -5307 2027 124 0 45 chr4 98036238 98036552 -86252110 + AluSg SINE Alu 1 300 -10 14032 183 30 21 chr4 98036552 98036883 -86251779 + L1MA4 LINE L1 1175 1501 -4981 3162 47 91 0 chr4 98036883 98037322 -86251340 + L1PA7 LINE L1 5693 6168 0 14032 183 30 21 chr4 98037322 98037633 -86251029 + L1MA4 LINE L1 1501 1808 -4674 2863 122 16 0 chr4 98037633 98038069 -86250593 - L1PA13 LINE L1 -1 6162 5720 14032 183 30 21 chr4 98038069 98042629 -86246033 + L1MA4 LINE L1 1808 6471 -11 30 45 0 0 chr4 98042629 98042673 -86245989 + AT_rich Low_complexity Low_complexity 1 44 0 1111 243 11 0 chr4 98042684 98042964 -86245698 + L1M4 LINE L1 4405 4687 -1459 2305 86 0 0 chr4 98042965 98043266 -86245396 - AluY SINE Alu -10 301 1 264 30 0 0 chr4 98045588 98045621 -86243041 + (CA)n Simple_repeat Simple_repeat 1 33 0 250 183 127 42 chr4 98046212 98046283 -86242379 - L2 LINE L2 -7 3306 3230 16438 150 32 13 chr4 98046406 98050240 -86238422 - L1MA3 LINE L1 0 7724 3966 2501 68 0 0 chr4 98050240 98050547 -86238115 - AluY SINE Alu -4 307 1 16438 150 32 13 chr4 98050547 98051908 -86236754 - L1MA3 LINE L1 -3758 3966 2633 3474 34 2 0 chr4 98051908 98052326 -86236336 - L1PA3 LINE L1 0 6155 5737 16438 150 32 13 chr4 98052326 98053610 -86235052 - L1MA3 LINE L1 -5091 2633 1109 649 157 35 9 chr4 98053616 98053731 -86234931 - L1MA3 LINE L1 -7432 133 16 998 171 9 46 chr4 98053784 98054000 -86234662 + MER3 DNA MER1_type 1 208 -1 470 240 248 7 chr4 98054575 98054790 -86233872 + MIR SINE MIR 2 262 0 1834 190 50 18 chr4 98055344 98055728 -86232934 + MSTD LTR MaLR 1 396 0 553 333 31 31 chr4 98056194 98056422 -86232240 + MIR SINE MIR 1 228 -34 323 276 45 30 chr4 98056588 98056787 -86231875 + HAL1 LINE L1 1350 1551 -956 569 138 0 0 chr4 98056833 98056920 -86231742 + AluSg/x SINE Alu 216 302 -7 328 387 7 13 chr4 98056920 98057070 -86231592 + HAL1 LINE L1 1590 1738 -769 251 325 66 10 chr4 98057485 98057682 -86230980 + L1M4 LINE L1 2144 2351 -3795 2075 174 78 2 chr4 98057775 98058171 -86230491 + MSTB LTR MaLR 1 426 0 8921 187 13 4 chr4 98058171 98059807 -86228855 + MSTB-int LTR MaLR 1 1651 0 2150 166 64 12 chr4 98059808 98060212 -86228450 + MSTB LTR MaLR 2 426 0 1846 143 7 0 chr4 98060347 98060652 -86228010 + AluSx SINE Alu 1 307 0 3264 275 129 8 chr4 98060687 98061886 -86226776 + L2 LINE L2 1700 3041 -272 2572 65 3 0 chr4 98061946 98062256 -86226406 + AluY SINE Alu 1 311 0 915 234 121 7 chr4 98062277 98062559 -86226103 + MER110 LTR ERV1 166 479 -12 233 311 66 33 chr4 98062560 98062743 -86225919 + L1P LINE L1 3561 3749 -2397 598 300 131 14 chr4 98063038 98063632 -86225030 + L1M4 LINE L1 4060 4723 -1423 490 344 86 0 chr4 98063663 98063849 -86224813 + MIR SINE MIR 61 262 0 285 196 36 0 chr4 98064330 98064386 -86224276 + MIR SINE MIR 96 153 -109 290 247 90 11 chr4 98066962 98067051 -86221611 + L2 LINE L2 3205 3300 -13 423 331 74 6 chr4 98067098 98067273 -86221389 + MIR SINE MIR 60 246 -16 287 343 57 61 chr4 98067678 98067923 -86220739 + MIR SINE MIR 3 246 -16 192 305 42 21 chr4 98069473 98069568 -86219094 + MIR SINE MIR 110 206 -56 316 312 88 24 chr4 98070420 98070590 -86218072 - L2 LINE L2 -215 3057 2877 25 65 0 0 chr4 98071363 98071409 -86217253 + AT_rich Low_complexity Low_complexity 1 46 0 238 216 0 20 chr4 98072378 98072429 -86216233 - MIR SINE MIR 0 262 213 2294 76 0 0 chr4 98072458 98072749 -86215913 - AluY SINE Alu -20 291 1 636 229 69 73 chr4 98072749 98072967 -86215695 - MIR SINE MIR -28 234 18 345 280 100 10 chr4 98072980 98073080 -86215582 - MIR SINE MIR -63 145 37 5195 148 40 5 chr4 98074123 98075227 -86213435 - L1PA16 LINE L1 -1 6165 5031 457 336 80 8 chr4 98075516 98075754 -86212908 - MIR SINE MIR -2 260 6 186 143 0 0 chr4 98075919 98075954 -86212708 + (TC)n Simple_repeat Simple_repeat 2 36 0 471 252 16 0 chr4 98075988 98076111 -86212551 + MER69 DNA AcHobo 12 136 -2390 21 0 0 0 chr4 98076740 98076761 -86211901 + AT_rich Low_complexity Low_complexity 1 21 0 589 254 14 59 chr4 98076762 98076982 -86211680 - L2 LINE L2 0 3313 3104 4370 133 17 4 chr4 98077009 98077709 -86210953 + L1PB3 LINE L1 5441 6149 -5 4080 107 10 3 chr4 98079004 98079621 -86209041 - L1MA2 LINE L1 0 6304 5684 250 125 21 42 chr4 98079869 98079917 -86208745 + L2 LINE L2 3263 3309 -4 298 342 9 9 chr4 98080377 98080491 -86208171 - MIR3 SINE MIR -39 169 56 1928 140 30 7 chr4 98080720 98081020 -86207642 + AluSx SINE Alu 1 307 -5 21 57 0 0 chr4 98081048 98081083 -86207579 + AT_rich Low_complexity Low_complexity 1 35 0 241 327 58 0 chr4 98082726 98082830 -86205832 - MIR SINE MIR -150 112 3 737 267 71 43 chr4 98083762 98083893 -86204769 - L2 LINE L2 -1035 2279 2153 2430 87 3 3 chr4 98083893 98084203 -86204459 + AluSg SINE Alu 1 310 0 737 267 71 43 chr4 98084203 98084393 -86204269 - L2 LINE L2 -1161 2153 1949 228 146 24 0 chr4 98085010 98085051 -86203611 - L2 LINE L2 -1375 1939 1898 2475 68 3 3 chr4 98085176 98085487 -86203175 + AluY SINE Alu 1 311 0 267 31 0 0 chr4 98085672 98085704 -86202958 + (CA)n Simple_repeat Simple_repeat 1 32 0 200 330 0 66 chr4 98085719 98085756 -86202906 + L3 LINE CR1 918 956 -621 304 58 19 19 chr4 98085756 98085808 -86202854 + (TA)n Simple_repeat Simple_repeat 2 53 0 2266 90 3 0 chr4 98085808 98086097 -86202565 - AluY SINE Alu -21 290 1 200 330 0 66 chr4 98086097 98086164 -86202498 + L3 LINE CR1 954 1016 -561 307 280 32 115 chr4 98086591 98086692 -86201970 + MER5A DNA MER1_type 20 105 -73 1695 172 42 25 chr4 98086692 98087047 -86201615 + MLT1A1 LTR MaLR 5 365 0 307 280 32 115 chr4 98087047 98087102 -86201560 + MER5A DNA MER1_type 105 163 -15 2444 77 0 10 chr4 98087280 98087629 -86201033 + AluSc SINE Alu 1 346 0 2045 156 12 3 chr4 98087686 98088019 -86200643 - MER1B DNA MER1_type -1 336 1 563 166 360 14 chr4 98088161 98088300 -86200362 + MER5A DNA MER1_type 1 187 -2 500 96 0 36 chr4 98088657 98088740 -86199922 + MADE1 DNA Mariner 1 80 0 598 177 20 95 chr4 98088919 98089066 -86199596 + FLAM_A SINE Alu 7 142 0 1664 198 30 25 chr4 98090476 98090839 -86197823 + MLT1A1 LTR MaLR 1 365 0 475 208 287 37 chr4 98092140 98092356 -86196306 - MLT1J LTR MaLR -15 496 227 2367 74 0 3 chr4 98092359 98092698 -86195964 + AluY SINE Alu 1 311 0 750 185 14 104 chr4 98092728 98092840 -86195822 + MSTD LTR MaLR 1 87 -309 3646 118 89 27 chr4 98092840 98093468 -86195194 - PABL_B LTR ERV1 0 667 1 750 185 14 104 chr4 98093468 98093566 -86195096 + MSTD LTR MaLR 87 192 -204 422 47 70 128 chr4 98093585 98093671 -86194991 - PABL_B LTR ERV1 -414 253 173 281 93 19 74 chr4 98093655 98093709 -86194953 - PABL_B LTR ERV1 -616 51 1 * 317 256 0 11 chr4 98093711 98093801 -86194861 + MSTD LTR MaLR 95 183 -213 602 98 57 90 chr4 98093826 98093948 -86194714 - PABL_B LTR ERV1 -414 253 136 816 186 83 0 chr4 98093979 98094135 -86194527 + MSTD LTR MaLR 228 396 0 6166 234 48 47 chr4 98094139 98094290 -86194372 + MSTD-int LTR MaLR 4 153 -1582 2200 109 0 0 chr4 98094290 98094597 -86194065 - AluY SINE Alu 0 307 1 1942 91 0 0 chr4 98094602 98094844 -86193818 - AluY SINE Alu -69 242 1 6166 234 48 47 chr4 98094844 98096415 -86192247 + MSTD-int LTR MaLR 156 1735 0 1785 190 58 13 chr4 98096415 98096794 -86191868 + MSTD LTR MaLR 1 396 0 341 311 113 0 chr4 98096797 98096948 -86191714 - MLT1J LTR MaLR -306 205 38 348 225 189 0 chr4 98096951 98097062 -86191600 + MER94 DNA DNA 1 132 -2 270 323 108 20 chr4 98097141 98097336 -86191326 - MIR SINE MIR -31 231 20 762 247 42 21 chr4 98097357 98097640 -86191022 + L1ME1 LINE L1 5824 6112 -54 295 397 23 11 chr4 98098224 98098398 -86190264 - L2 LINE L2 -573 2741 2566 210 162 0 0 chr4 98098877 98098914 -86189748 + T-rich Low_complexity Low_complexity 1 37 0 603 268 109 6 chr4 98099764 98099947 -86188715 + MIR SINE MIR 36 237 -25 283 160 40 23 chr4 98100944 98101119 -86187543 + (TA)n Simple_repeat Simple_repeat 1 178 0 194 316 132 9 chr4 98101502 98101582 -86187080 + L3b LINE CR1 1106 1205 -378 2191 102 0 20 chr4 98101582 98101886 -86186776 + AluSg1 SINE Alu 1 298 -11 194 316 132 9 chr4 98101886 98101919 -86186743 + L3b LINE CR1 1205 1233 -350 368 322 125 7 chr4 98101953 98102105 -86186557 + MIR SINE MIR 31 200 -62 2148 253 43 30 chr4 98102314 98102718 -86185944 + L1ME1 LINE L1 5409 5829 -337 279 0 0 0 chr4 98102718 98102749 -86185913 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2148 253 43 30 chr4 98102749 98103087 -86185575 + L1ME1 LINE L1 5829 6161 -5 239 148 0 37 chr4 98103180 98103234 -86185428 + FAM SINE Alu 126 177 -2 929 203 0 16 chr4 98103234 98103416 -86185246 + AluJb SINE Alu 120 298 -14 405 293 50 20 chr4 98103514 98103814 -86184848 + L1M4 LINE L1 3138 3446 -2700 2180 97 37 0 chr4 98103830 98104129 -86184533 - AluSx SINE Alu -2 310 1 25 0 0 0 chr4 98104178 98104203 -86184459 + AT_rich Low_complexity Low_complexity 1 25 0 1326 254 142 19 chr4 98104297 98104813 -86183849 + MLT1E LTR MaLR 15 593 0 685 289 32 58 chr4 98104885 98105349 -86183313 + L1M4 LINE L1 3689 4164 -1982 2378 79 0 32 chr4 98105349 98105665 -86182997 - AluY SINE Alu -5 306 1 685 289 32 58 chr4 98105665 98105704 -86182958 + L1M4 LINE L1 4164 4202 -1944 746 223 213 5 chr4 98105704 98105901 -86182761 - MER8 DNA MER2_type 0 239 2 685 289 32 58 chr4 98105901 98106087 -86182575 + L1M4 LINE L1 4202 4361 -1785 911 293 66 27 chr4 98106117 98106482 -86182180 - LTR16A LTR ERVL -9 441 63 507 265 75 36 chr4 98106545 98106729 -86181933 + L1M4 LINE L1 4420 4595 -1551 285 29 0 0 chr4 98106729 98106763 -86181899 + (TG)n Simple_repeat Simple_repeat 2 35 0 507 265 75 36 chr4 98106763 98106936 -86181726 + L1M4 LINE L1 4595 4791 -1355 3989 265 129 60 chr4 98106960 98108998 -86179664 + L2 LINE L2 723 2936 -377 775 212 0 0 chr4 98108998 98109130 -86179532 - FLAM_A SINE Alu -1 132 1 3989 265 129 60 chr4 98109130 98109357 -86179305 + L2 LINE L2 2936 3146 -167 413 307 24 12 chr4 98109443 98109609 -86179053 + L2 LINE L2 3146 3313 0 1925 155 0 31 chr4 98111188 98111510 -86177152 + AluSx SINE Alu 1 312 0 1913 215 60 19 chr4 98112149 98112632 -86176030 + MLT1D LTR MaLR 1 503 -2 297 303 8 8 chr4 98112641 98112763 -86175899 - MLT1L LTR MaLR -4 611 490 237 279 51 0 chr4 98113030 98113109 -86175553 - MLT1L LTR MaLR -415 200 118 302 208 6 164 chr4 98113148 98113200 -86175462 + MER94 DNA DNA 1 60 -74 3413 97 2 6 chr4 98113200 98113696 -86174966 + L1PB1 LINE L1 5658 6151 0 302 208 6 164 chr4 98113696 98113802 -86174860 + MER94 DNA DNA 60 134 0 2160 105 3 32 chr4 98113889 98114202 -86174460 + AluY SINE Alu 1 304 -7 1801 151 17 91 chr4 98114377 98114795 -86173867 - MLT1B LTR MaLR -3 387 1 193 330 55 0 chr4 98114825 98114916 -86173746 + L3 LINE CR1 1144 1239 -338 353 58 19 0 chr4 98115401 98115453 -86173209 + (CA)n Simple_repeat Simple_repeat 1 53 0 1595 296 56 42 chr4 98115554 98116405 -86172257 - ERVL-F LTR ERVL -4089 1675 813 1381 143 48 15 chr4 98116431 98116703 -86171959 + L1PB4 LINE L1 5876 6156 0 21 36 0 0 chr4 98116764 98116792 -86171870 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 98116844 98116872 -86171790 + AT_rich Low_complexity Low_complexity 1 28 0 2304 119 0 0 chr4 98116878 98117189 -86171473 + AluSx SINE Alu 1 311 -1 2209 98 0 7 chr4 98117391 98117710 -86170952 - AluSg SINE Alu 0 317 1 269 297 35 21 chr4 98117847 98117992 -86170670 - ERVL-F LTR ERVL -5325 439 293 964 290 113 26 chr4 98118062 98118558 -86170104 - MLT2F LTR ERVL -122 541 3 347 290 0 19 chr4 98118759 98118866 -86169796 + (TATG)n Simple_repeat Simple_repeat 2 106 0 22 70 0 0 chr4 98118881 98118924 -86169738 + AT_rich Low_complexity Low_complexity 1 43 0 211 194 0 0 chr4 98120021 98120057 -86168605 + (CATA)n Simple_repeat Simple_repeat 2 37 0 1511 283 170 29 chr4 98120833 98120941 -86167721 + L2 LINE L2 583 674 -2640 379 217 48 106 chr4 98120941 98121003 -86167659 + MER5B DNA MER1_type 1 65 -113 2319 70 0 3 chr4 98121003 98121301 -86167361 + AluY SINE Alu 1 297 -14 379 217 48 106 chr4 98121301 98121427 -86167235 + MER5B DNA MER1_type 65 178 0 1511 283 170 29 chr4 98121427 98121528 -86167134 + L2 LINE L2 674 759 -2555 526 14 159 0 chr4 98121528 98121597 -86167065 + MADE1 DNA Mariner 1 80 0 1511 283 170 29 chr4 98121597 98122192 -86166470 + L2 LINE L2 759 1502 -1812 192 303 0 45 chr4 98122188 98122254 -86166408 + L2 LINE L2 3246 3308 -5 * 1878 185 0 3 chr4 98122485 98122798 -86165864 - AluJb SINE Alu 0 312 1 585 280 6 42 chr4 98123333 98123501 -86165161 - MIR SINE MIR -70 192 31 22 0 0 0 chr4 98124247 98124269 -86164393 + AT_rich Low_complexity Low_complexity 1 22 0 2095 289 17 10 chr4 98125164 98125819 -86162843 - L2 LINE L2 -729 2585 1888 1673 231 38 38 chr4 98125870 98126368 -86162294 + MLT1D LTR MaLR 1 498 -7 2420 87 0 0 chr4 98126750 98127048 -86161614 + AluSg SINE Alu 1 298 -12 689 352 85 38 chr4 98127227 98127670 -86160992 + L2 LINE L2 2383 2804 -468 2382 65 7 0 chr4 98127670 98127963 -86160699 - AluY SINE Alu -16 295 1 689 352 85 38 chr4 98127963 98128356 -86160306 + L2 LINE L2 2804 3263 -9 2020 165 11 37 chr4 98128472 98128847 -86159815 - MLT1A1 LTR MaLR 0 365 1 279 266 101 0 chr4 98130775 98130854 -86157808 - MER91B DNA MER1_type -8 182 96 640 281 22 22 chr4 98131441 98131665 -86156997 - L1M4 LINE L1 -6300 242 19 28 48 0 0 chr4 98132000 98132042 -86156620 + AT_rich Low_complexity Low_complexity 1 42 0 869 174 16 5 chr4 98132355 98132545 -86156117 - L1P LINE L1 -869 5277 5086 712 169 0 8 chr4 98132606 98132730 -86155932 + AluSg/x SINE Alu 174 296 -16 4909 145 5 8 chr4 98132731 98133573 -86155089 + L1PA16 LINE L1 5308 6146 -20 312 208 14 153 chr4 98134053 98134197 -86154465 - MER94 DNA DNA 0 134 11 982 119 57 57 chr4 98134380 98134573 -86154089 - THE1B LTR MaLR 0 364 172 188 83 0 28 chr4 98134573 98134609 -86154053 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 41043 33 21 1 chr4 98134629 98140657 -86148005 - L1PA2 LINE L1 -4 6151 1 1290 91 0 11 chr4 98140657 98140843 -86147819 - THE1B LTR MaLR -180 184 1 2192 123 7 3 chr4 98141273 98141581 -86147081 - AluSg SINE Alu -1 309 1 486 86 14 0 chr4 98142044 98142114 -86146548 + L1PA16 LINE L1 5836 5906 -260 383 339 48 16 chr4 98143379 98143568 -86145094 + MIR SINE MIR 7 201 -61 2358 108 0 3 chr4 98144105 98144412 -86144250 - AluSx SINE Alu -2 310 5 440 317 74 15 chr4 98144946 98145217 -86143445 + MLT1J1 LTR MaLR 155 441 -5 388 300 114 30 chr4 98146116 98146350 -86142312 + MIR SINE MIR 9 262 0 229 302 190 9 chr4 98146986 98147102 -86141560 - MIR SINE MIR -81 181 45 590 282 71 50 chr4 98147203 98147583 -86141079 - LTR16C LTR ERVL -2 489 102 683 271 62 5 chr4 98147905 98148115 -86140547 + MIR SINE MIR 23 244 -18 389 247 48 38 chr4 98148948 98149134 -86139528 + MER5A DNA MER1_type 1 188 -1 3783 272 119 52 chr4 98149554 98150383 -86138279 - L2 LINE L2 0 3313 2541 7839 17 0 0 chr4 98150383 98151418 -86137244 + L1PA2 LINE L1 5121 6155 0 3783 272 119 52 chr4 98151418 98152573 -86136089 - L2 LINE L2 -772 2541 1201 479 298 99 25 chr4 98154024 98154266 -86134396 + MIR SINE MIR 3 262 0 201 180 100 0 chr4 98154345 98154395 -86134267 + MIR SINE MIR 96 150 -112 1436 75 0 0 chr4 98154452 98154626 -86134036 + AluY SINE Alu 44 217 -94 23 33 0 0 chr4 98154638 98154668 -86133994 + AT_rich Low_complexity Low_complexity 1 30 0 2037 165 28 40 chr4 98154673 98155068 -86133594 - MLT1B LTR MaLR 0 390 1 44 35 0 0 chr4 98155342 98155400 -86133262 + AT_rich Low_complexity Low_complexity 1 58 0 5273 105 7 4 chr4 98155402 98156212 -86132450 - L1PA8 LINE L1 -1004 5142 4330 6931 64 6 3 chr4 98156213 98157213 -86131449 + L1PA8 LINE L1 5157 6159 -13 132 43 0 0 chr4 98157213 98157401 -86131261 + AT_rich Low_complexity Low_complexity 1 188 0 359 303 64 21 chr4 98157543 98157731 -86130931 + MLT1L LTR MaLR 3 198 -417 501 204 31 6 chr4 98157918 98158137 -86130525 + MER34 LTR ERV1 12 278 -264 690 180 100 0 chr4 98158208 98158358 -86130304 + MER34 LTR ERV1 378 542 0 2207 188 10 0 chr4 98158397 98158801 -86129861 - LOR1b LTR ERV1 0 461 54 289 266 223 0 chr4 98159524 98159618 -86129044 + L2 LINE L2 3199 3313 0 734 297 33 6 chr4 98160841 98161094 -86127568 + MIR SINE MIR 6 262 0 444 251 71 86 chr4 98161102 98161593 -86127069 - L1ME4a LINE L1 -78 6043 5560 1587 183 37 16 chr4 98161784 98162161 -86126501 + MER58D DNA MER1_type 1 385 -1 31 26 0 0 chr4 98162170 98162208 -86126454 + AT_rich Low_complexity Low_complexity 1 38 0 366 271 130 31 chr4 98163398 98163590 -86125072 - MIR SINE MIR -23 239 29 1329 107 0 0 chr4 98163697 98163866 -86124796 + AluSg/x SINE Alu 71 239 -71 4950 139 76 90 chr4 98163866 98165452 -86123210 + pTR5 LTR ERV1 743 2438 0 27247 90 4 4 chr4 98165455 98169543 -86119119 + HERV9 LTR ERV1 1 4092 -4307 6401 40 4 0 chr4 98169556 98170312 -86118350 - L1PA5 LINE L1 0 6154 5396 16979 103 11 12 chr4 98170312 98175163 -86113499 + HERV9 LTR ERV1 504 8399 0 5402 95 15 0 chr4 98175179 98175853 -86112809 + LTR12 LTR ERV1 5 688 0 487 227 70 0 chr4 98176019 98176147 -86112515 + MER103 DNA DNA 23 159 -7 199 307 133 66 chr4 98176597 98176763 -86111899 + MIR SINE MIR 86 262 0 401 266 209 6 chr4 98177237 98177414 -86111248 - MIR SINE MIR -18 244 32 1773 143 17 17 chr4 98177643 98177937 -86110725 - AluJo SINE Alu -18 294 1 23 0 0 0 chr4 98177999 98178022 -86110640 + AT_rich Low_complexity Low_complexity 1 23 0 2367 86 0 10 chr4 98178365 98178669 -86109993 - AluY SINE Alu -10 301 1 2042 85 41 34 chr4 98178681 98178974 -86109688 - AluY SINE Alu -16 295 1 7659 126 179 23 chr4 98179081 98180549 -86108113 - pTR5 LTR ERV1 0 2438 743 1244 91 30 91 chr4 98180757 98180987 -86107675 - L1MA5A LINE L1 -3 6294 6079 2082 204 85 35 chr4 98181173 98181689 -86106973 - MER34 LTR ERV1 0 542 1 437 256 46 51 chr4 98182245 98182440 -86106222 - MLT1L LTR MaLR -42 573 380 2501 173 59 2 chr4 98182440 98182862 -86105800 - MLT1C LTR MaLR 0 467 22 310 242 242 0 chr4 98182904 98183082 -86105580 - MLT1L LTR MaLR -231 384 164 334 287 110 34 chr4 98183342 98183579 -86105083 - L1ME4a LINE L1 0 6121 5867 206 319 186 9 chr4 98183956 98184069 -86104593 + L2 LINE L2 3140 3272 0 243 235 15 0 chr4 98184926 98184994 -86103668 - MLT1K LTR MaLR 0 588 520 406 261 30 64 chr4 98186488 98186691 -86101971 - LTR33 LTR ERVL -22 499 304 336 241 78 85 chr4 98186694 98186835 -86101827 + MER5C DNA MER1_type 21 160 -164 1127 148 22 0 chr4 98186845 98187027 -86101635 - AluSg/x SINE Alu -4 308 123 435 191 32 56 chr4 98187028 98187154 -86101508 + MER5C DNA MER1_type 198 320 -4 316 200 0 0 chr4 98187302 98187362 -86101300 - LTR33 LTR ERVL -431 90 31 645 265 55 0 chr4 98187463 98187644 -86101018 + LTR41 LTR ERVL 1 191 -582 1248 65 0 0 chr4 98187796 98187949 -86100713 - AluY SINE Alu -5 306 154 1009 248 44 81 chr4 98189956 98190387 -86098275 + MLT1J LTR MaLR 26 440 -71 226 224 61 0 chr4 98190433 98190482 -86098180 - HsTC2 DNA Tc2 -611 1287 1236 15191 148 21 9 chr4 98192959 98195347 -86093315 - Tigger1 DNA MER2_type -1 2417 1 244 269 0 13 chr4 98196296 98196316 -86092346 + (CA)n Simple_repeat Simple_repeat 2 21 -57 2394 69 0 0 chr4 98196316 98196604 -86092058 - AluSc SINE Alu -21 288 1 244 269 0 13 chr4 98196604 98196661 -86092001 + (CA)n Simple_repeat Simple_repeat 21 78 0 252 250 192 17 chr4 98198190 98198310 -86090352 + MIR3 SINE MIR 23 163 -45 193 344 65 54 chr4 98198723 98198816 -86089846 - L2 LINE L2 -17 3255 3162 380 316 61 17 chr4 98198865 98199096 -86089566 - MARNA DNA Mariner -48 538 298 599 273 53 0 chr4 98199204 98199354 -86089308 - MIR SINE MIR -21 241 84 381 238 0 0 chr4 98200725 98200868 -86087794 + GA-rich Low_complexity Low_complexity 2 144 0 250 296 0 12 chr4 98200881 98200962 -86087700 + GA-rich Low_complexity Low_complexity 2 81 0 1136 319 90 42 chr4 98201039 98201755 -86086907 + ERVL LTR ERVL 4055 4812 -952 1201 181 120 11 chr4 98201755 98201885 -86086777 + AluJo SINE Alu 1 115 -197 1923 91 14 22 chr4 98201885 98202160 -86086502 + AluY SINE Alu 36 308 -3 1201 181 120 11 chr4 98202160 98202305 -86086357 + AluJo SINE Alu 115 306 -6 1136 319 90 42 chr4 98202305 98202354 -86086308 + ERVL LTR ERVL 4812 4857 -907 5457 123 16 0 chr4 98202354 98203148 -86085514 + L1P3 LINE L1 3 809 -5652 518 40 122 0 chr4 98303148 98303222 -85985440 - MER30B DNA MER1_type -110 80 1 2302 74 10 0 chr4 98303279 98303577 -85985085 - AluSg SINE Alu -9 301 1 29 0 0 0 chr4 98303739 98303768 -85984894 + AT_rich Low_complexity Low_complexity 1 29 0 27 73 0 0 chr4 98304162 98304217 -85984445 + GC_rich Low_complexity Low_complexity 1 55 0 321 278 116 116 chr4 98305171 98305682 -85982980 + L3 LINE CR1 1055 1565 -12 24 0 0 0 chr4 98305726 98305750 -85982912 + AT_rich Low_complexity Low_complexity 1 24 0 2028 109 41 3 chr4 98307286 98307579 -85981083 - AluSx SINE Alu -8 304 1 22 56 0 0 chr4 98307889 98307925 -85980737 + AT_rich Low_complexity Low_complexity 1 36 0 2382 126 21 16 chr4 98308066 98308438 -85980224 - THE1C LTR MaLR -1 374 1 1632 179 0 27 chr4 98308483 98308784 -85979878 - AluJb SINE Alu -19 293 1 450 220 20 0 chr4 98308859 98308959 -85979703 + FLAM_A SINE Alu 35 136 -6 2096 133 0 25 chr4 98309051 98309368 -85979294 + AluSx SINE Alu 1 309 -3 2170 138 34 0 chr4 98309369 98309696 -85978966 + L1PA16 LINE L1 5820 6157 -9 623 181 25 131 chr4 98309714 98309913 -85978749 + MLT1C LTR MaLR 167 421 -46 364 397 42 32 chr4 98310300 98310678 -85977984 + L2 LINE L2 2854 3235 -37 837 295 58 31 chr4 98311074 98311433 -85977229 + L2 LINE L2 2943 3311 -2 218 329 66 0 chr4 98311528 98311604 -85977058 - L2 LINE L2 -20 3252 3172 1868 145 82 57 chr4 98311632 98311677 -85976985 - THE1C LTR MaLR 0 375 333 2113 129 0 7 chr4 98311677 98311971 -85976691 + AluSc SINE Alu 1 292 -17 1868 145 82 57 chr4 98311971 98312291 -85976371 - THE1C LTR MaLR -42 333 1 9611 116 83 33 chr4 98312291 98313365 -85975297 - THE1C-int LTR MaLR 0 1580 408 1981 106 18 7 chr4 98313365 98313639 -85975023 - AluSc SINE Alu -32 277 1 9611 116 83 33 chr4 98313639 98314069 -85974593 - THE1C-int LTR MaLR -1172 408 1 1816 148 70 9 chr4 98314111 98314441 -85974221 - THE1C LTR MaLR -25 350 1 37 52 0 0 chr4 98314449 98314507 -85974155 + AT_rich Low_complexity Low_complexity 1 58 0 394 254 63 24 chr4 98314568 98314694 -85973968 + L1ME2 LINE L1 5985 6115 -49 2117 110 31 0 chr4 98314710 98315000 -85973662 + AluSg SINE Alu 1 299 -11 261 250 62 0 chr4 98315063 98315127 -85973535 - L2 LINE L2 -38 3234 3167 2162 122 0 6 chr4 98315141 98315453 -85973209 - AluSx SINE Alu -2 310 1 249 211 11 78 chr4 98315496 98315586 -85973076 + L1ME LINE L1 5804 5887 -234 1081 146 12 12 chr4 98315729 98315900 -85972762 + AluSg/x SINE Alu 125 295 -17 2120 104 17 10 chr4 98315920 98316218 -85972444 + AluSx SINE Alu 1 300 -12 2243 135 46 23 chr4 98316397 98316790 -85971872 + L1MA4 LINE L1 5895 6296 -4 1905 157 3 0 chr4 98317121 98317414 -85971248 + AluSq SINE Alu 3 296 -17 201 204 111 0 chr4 98317520 98317574 -85971088 - L2 LINE L2 -7 3265 3206 835 198 34 23 chr4 98317772 98317949 -85970713 + MER3 DNA MER1_type 2 180 -29 2097 104 0 7 chr4 98317949 98318251 -85970411 - AluSg SINE Alu 0 304 5 2214 193 63 41 chr4 98318258 98318767 -85969895 + MER74B LTR ERVL 56 575 -47 206 361 16 0 chr4 98318919 98318980 -85969682 - L2 LINE L2 -62 3251 3190 385 322 26 20 chr4 98319304 98319456 -85969206 + MIR SINE MIR 24 176 -86 234 282 42 0 chr4 98321248 98321319 -85967343 + L1ME LINE L1 5696 5769 -352 2275 86 7 13 chr4 98321416 98321720 -85966942 + AluSg SINE Alu 1 302 -8 1784 180 3 16 chr4 98321809 98322120 -85966542 - AluSx SINE Alu 0 312 6 23 33 0 0 chr4 98322179 98322209 -85966453 + AT_rich Low_complexity Low_complexity 1 30 0 282 29 0 0 chr4 98323259 98323294 -85965368 + (TG)n Simple_repeat Simple_repeat 2 36 0 957 184 28 90 chr4 98323484 98323739 -85964923 + MER8 DNA MER2_type 1 239 0 482 182 25 66 chr4 98323862 98323983 -85964679 + FLAM_A SINE Alu 1 116 -17 226 260 26 39 chr4 98324207 98324284 -85964378 - MIR SINE MIR 0 262 187 1708 172 7 10 chr4 98325768 98326064 -85962598 + AluJb SINE Alu 1 295 -17 1789 154 3 7 chr4 98327283 98327568 -85961094 - AluJo SINE Alu -26 286 3 2239 114 3 13 chr4 98328207 98328522 -85960140 + AluSx SINE Alu 1 312 0 359 286 116 49 chr4 98328568 98328852 -85959810 + L1 LINE L1 3370 3634 -2512 1917 112 105 0 chr4 98328852 98329129 -85959533 + AluSx SINE Alu 1 306 -6 359 286 116 49 chr4 98329129 98329574 -85959088 + L1 LINE L1 3634 4148 -1998 338 301 237 19 chr4 98329729 98329885 -85958777 + L1 LINE L1 4335 4456 -1690 1448 161 98 11 chr4 98329885 98330159 -85958503 + AluJb SINE Alu 1 298 -14 338 301 237 19 chr4 98330159 98330268 -85958394 + L1 LINE L1 4456 4658 -1488 245 288 45 0 chr4 98330855 98330921 -85957741 - L2 LINE L2 -1393 1921 1853 2137 192 40 24 chr4 98331072 98331571 -85957091 + LTR55 LTR ERV 5 511 -37 398 252 37 15 chr4 98331619 98331754 -85956908 + L1M4 LINE L1 2441 2578 -3568 1194 92 27 22 chr4 98331759 98331943 -85956719 - MER61B LTR ERV1 -240 185 1 21 0 0 0 chr4 98333662 98333683 -85954979 + AT_rich Low_complexity Low_complexity 1 21 0 1849 99 41 73 chr4 98333933 98334247 -85954415 - AluY SINE Alu -7 304 1 54 40 0 0 chr4 98334300 98334375 -85954287 + AT_rich Low_complexity Low_complexity 1 75 0 36 0 0 21 chr4 98334604 98334636 -85954026 + AT_rich Low_complexity Low_complexity 1 33 -13 2285 94 0 0 chr4 98334636 98334922 -85953740 - AluSg SINE Alu -24 286 1 36 0 0 21 chr4 98334922 98334936 -85953726 + AT_rich Low_complexity Low_complexity 33 46 0 24 32 0 0 chr4 98335675 98335706 -85952956 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr4 98336142 98336168 -85952494 + AT_rich Low_complexity Low_complexity 1 26 0 487 316 116 5 chr4 98337002 98337217 -85951445 + MIR SINE MIR 5 243 -19 361 302 9 9 chr4 98337805 98337921 -85950741 - MIR SINE MIR 0 262 147 24 32 0 0 chr4 98338153 98338184 -85950478 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 98338244 98338265 -85950397 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 98338514 98338544 -85950118 + AT_rich Low_complexity Low_complexity 1 30 0 663 274 55 30 chr4 98338560 98338797 -85949865 - MIR SINE MIR -3 259 17 301 233 85 93 chr4 98339008 98339137 -85949525 - L2 LINE L2 -7 3265 3138 1997 148 3 7 chr4 98339273 98339570 -85949092 - AluJb SINE Alu -16 296 1 1695 191 0 25 chr4 98339772 98339912 -85948750 + AluJo SINE Alu 1 143 -169 2373 96 0 7 chr4 98339912 98340215 -85948447 + AluSx SINE Alu 3 303 -9 1695 191 0 25 chr4 98340215 98340394 -85948268 + AluJo SINE Alu 143 312 0 816 137 17 0 chr4 98340416 98340568 -85948094 - AluSg/x SINE Alu 0 315 162 21 0 0 0 chr4 98341133 98341154 -85947508 + AT_rich Low_complexity Low_complexity 1 21 0 2034 125 14 0 chr4 98341154 98341442 -85947220 - AluSx SINE Alu -20 292 1 31 76 0 0 chr4 98341661 98341727 -85946935 + AT_rich Low_complexity Low_complexity 1 66 0 1656 176 26 17 chr4 98341931 98342233 -85946429 - AluJo SINE Alu -7 305 1 311 258 8 33 chr4 98343201 98343321 -85945341 + L1MC/D LINE L1 4590 4706 -1440 228 184 0 0 chr4 98343568 98343617 -85945045 + (TA)n Simple_repeat Simple_repeat 1 49 0 238 220 34 0 chr4 98343669 98343728 -85944934 + (TATG)n Simple_repeat Simple_repeat 2 62 0 391 254 79 118 chr4 98343730 98344045 -85944617 + L1MC/D LINE L1 4960 5262 -884 471 219 143 84 chr4 98344055 98344392 -85944270 + L1MC/D LINE L1 5281 5597 -787 778 188 0 0 chr4 98344392 98344520 -85944142 + FLAM_C SINE Alu 2 129 -4 471 219 143 84 chr4 98344520 98344552 -85944110 + L1MC/D LINE L1 5597 5626 -758 2018 122 0 0 chr4 98344552 98344823 -85943839 + AluSq SINE Alu 22 292 -21 471 219 143 84 chr4 98344823 98344910 -85943752 + L1MC/D LINE L1 5626 5766 -618 1714 126 61 29 chr4 98345047 98345325 -85943337 - AluSq SINE Alu -26 287 1 26 93 0 0 chr4 98345346 98345421 -85943241 + AT_rich Low_complexity Low_complexity 1 75 0 24 53 0 0 chr4 98345813 98345851 -85942811 + AT_rich Low_complexity Low_complexity 1 38 0 2051 141 0 0 chr4 98347063 98347362 -85941300 + AluSx SINE Alu 3 301 -11 23 33 0 0 chr4 98347632 98347662 -85941000 + AT_rich Low_complexity Low_complexity 1 30 0 1522 150 98 7 chr4 98347808 98348094 -85940568 + AluJo SINE Alu 1 312 0 378 325 51 36 chr4 98348105 98348388 -85940274 + L1 LINE L1 173 692 -5611 4563 241 63 26 chr4 98348637 98349108 -85939554 + L1 LINE L1 798 1250 -5132 2947 176 19 74 chr4 98349108 98349839 -85938823 - LTR8 LTR ERV1 0 691 1 4563 241 63 26 chr4 98349839 98350591 -85938071 + L1 LINE L1 1250 1973 -4409 1694 179 46 13 chr4 98350591 98350893 -85937769 - AluJo SINE Alu 0 312 1 4563 241 63 26 chr4 98350893 98352033 -85936629 + L1 LINE L1 1973 3112 -3270 1819 225 24 111 chr4 98352053 98352629 -85936033 + MLT2B3 LTR ERVL 5 486 -34 226 226 0 0 chr4 98352630 98352683 -85935979 + (TATATG)n Simple_repeat Simple_repeat 4 56 0 344 141 0 5 chr4 98352683 98352751 -85935911 + MLT2B2 LTR ERVL 455 515 0 1662 247 109 3 chr4 98352753 98353004 -85935658 + L1 LINE L1 3129 3352 -3030 2174 94 9 28 chr4 98353004 98353323 -85935339 + AluSp SINE Alu 1 313 0 1662 247 109 3 chr4 98353323 98353649 -85935013 + L1 LINE L1 3352 3767 -2615 455 169 92 56 chr4 98353631 98353727 -85934935 + L1 LINE L1 5466 5570 -812 * 1735 198 25 8 chr4 98353727 98354086 -85934576 + MLT1A1 LTR MaLR 1 365 0 455 169 92 56 chr4 98354086 98354131 -85934531 + L1 LINE L1 5570 5612 -770 2630 143 26 85 chr4 98354142 98354647 -85934015 - THE1-int LTR MaLR -755 825 351 38192 84 10 7 chr4 98354647 98360779 -85927883 + L1PA6 LINE L1 2 6152 -2 13216 64 7 7 chr4 98360930 98363458 -85925204 + L1PA6 LINE L1 3606 6153 -1 2321 144 3 0 chr4 98363458 98363826 -85924836 - THE1-int LTR MaLR -1206 374 6 1824 182 30 44 chr4 98363830 98364391 -85924271 - MLT2A2 LTR ERVL 0 554 1 513 253 50 4 chr4 98364483 98364626 -85924036 + MIR SINE MIR 3 148 -60 2036 134 7 3 chr4 98364739 98365038 -85923624 - AluSx SINE Alu -12 300 1 365 282 168 33 chr4 98365251 98365645 -85923017 + L1ME LINE L1 5283 5729 -392 1883 119 61 14 chr4 98365648 98365925 -85922737 - AluSx SINE Alu -22 290 1 28 0 0 0 chr4 98365925 98365953 -85922709 + AT_rich Low_complexity Low_complexity 1 28 0 2404 80 0 7 chr4 98366159 98366459 -85922203 + AluY SINE Alu 1 298 -13 342 32 63 32 chr4 98366512 98366575 -85922087 + GA-rich Low_complexity Low_complexity 1 65 0 637 228 96 77 chr4 98368311 98368635 -85920027 + LTR16A1 LTR ERVL 1 330 -127 235 154 0 0 chr4 98368635 98368674 -85919988 - MER5B DNA MER1_type 0 178 140 869 220 273 3 chr4 98368675 98368961 -85919701 - MLT1F LTR MaLR 0 542 180 24 53 0 0 chr4 98369028 98369066 -85919596 + AT_rich Low_complexity Low_complexity 1 38 0 1127 128 0 0 chr4 98369131 98369287 -85919375 - AluSq SINE Alu -157 156 1 296 180 98 66 chr4 98369288 98369410 -85919252 + L1M4 LINE L1 4533 4658 -1488 333 311 138 48 chr4 98369469 98369733 -85918929 + L1M4 LINE L1 4747 5063 -1083 1717 124 124 0 chr4 98369733 98370000 -85918662 + AluSg SINE Alu 1 300 -10 333 311 138 48 chr4 98370000 98370147 -85918515 + L1M4 LINE L1 5063 5195 -951 623 288 65 54 chr4 98370356 98370724 -85917938 + L1M4 LINE L1 5292 5626 -495 241 250 60 35 chr4 98370756 98370872 -85917790 + L1M4 LINE L1 5768 5886 -288 14333 212 28 46 chr4 98371107 98372319 -85916343 + L1P4 LINE L1 1225 2457 -4359 2116 134 0 0 chr4 98372319 98372617 -85916045 - AluSg SINE Alu -12 298 1 14333 212 28 46 chr4 98372617 98372661 -85916001 + L1P4 LINE L1 2457 2500 -4316 2343 93 3 0 chr4 98372661 98372962 -85915700 + AluSc SINE Alu 1 302 -7 14333 212 28 46 chr4 98372962 98376733 -85911929 + L1P4 LINE L1 2500 6166 -650 1028 121 0 0 chr4 98376737 98376878 -85911784 + AluSg/x SINE Alu 164 304 -8 6089 148 18 27 chr4 98376897 98377283 -85911379 + L1PB1 LINE L1 4012 4400 -1751 266 0 29 0 chr4 98377283 98377317 -85911345 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6089 148 18 27 chr4 98377317 98378726 -85909936 + L1PB1 LINE L1 4400 5786 -365 288 0 0 0 chr4 98378726 98378758 -85909904 + (CA)n Simple_repeat Simple_repeat 2 33 0 6089 148 18 27 chr4 98378758 98379121 -85909541 + L1PB1 LINE L1 5786 6151 0 472 94 0 0 chr4 98379120 98379184 -85909478 + L1PA15 LINE L1 5724 5787 -379 * 2535 138 5 5 chr4 98379214 98379620 -85909042 + L1PA15 LINE L1 5760 6165 0 212 242 117 101 chr4 98379760 98380008 -85908654 - L2 LINE L2 -1377 1937 1686 192 125 0 0 chr4 98380050 98380082 -85908580 + (CATATA)n Simple_repeat Simple_repeat 2 33 0 35 0 0 0 chr4 98380740 98380775 -85907887 + AT_rich Low_complexity Low_complexity 1 35 0 1281 99 6 6 chr4 98381524 98381705 -85906957 - AluSg/x SINE Alu -6 306 126 274 320 147 25 chr4 98382111 98382444 -85906218 - L2 LINE L2 -298 2974 2597 1492 167 86 4 chr4 98382603 98382872 -85905790 - AluJo SINE Alu -21 291 1 3433 152 9 2 chr4 98382904 98383464 -85905198 - MER6 DNA MER2_type 0 865 302 770 199 165 10 chr4 98383465 98383542 -85905120 + L1 LINE L1 3599 3663 -2483 384 22 0 0 chr4 98383542 98383587 -85905075 + (CA)n Simple_repeat Simple_repeat 1 45 0 770 199 165 10 chr4 98383587 98383715 -85904947 + L1 LINE L1 3663 3836 -2310 2656 155 43 2 chr4 98383718 98384183 -85904479 + L1PA16 LINE L1 5663 6146 -20 29 0 0 0 chr4 98384232 98384261 -85904401 + AT_rich Low_complexity Low_complexity 1 29 0 2250 103 3 7 chr4 98384897 98385207 -85903455 + AluSx SINE Alu 1 309 -3 1227 296 76 48 chr4 98385878 98385931 -85902731 + L1MEd LINE L1 324 374 -5745 2005 136 0 3 chr4 98385931 98386261 -85902401 + AluSq SINE Alu 1 329 0 1227 296 76 48 chr4 98386261 98387113 -85901549 + L1MEd LINE L1 374 1256 -4863 189 0 0 0 chr4 98387180 98387201 -85901461 + (T)n Simple_repeat Simple_repeat 1 21 0 4450 123 13 9 chr4 98387203 98387950 -85900712 - L1HS LINE L1 -4 6151 5402 13690 39 1 6 chr4 98389314 98391309 -85897353 - L1P1 LINE L1 -389 5766 3784 207 100 0 0 chr4 98441323 98441353 -85847309 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 831 202 43 93 chr4 98441749 98441818 -85846844 + MER34B LTR ERV1 12 83 -482 2299 105 0 16 chr4 98441818 98442132 -85846530 + AluSg SINE Alu 1 309 -1 831 202 43 93 chr4 98442132 98442364 -85846298 + MER34B LTR ERV1 83 298 -267 1291 108 6 0 chr4 98442464 98442640 -85846022 + AluSq SINE Alu 132 308 -5 2406 61 10 0 chr4 98442643 98442937 -85845725 + AluY SINE Alu 1 297 -14 1791 182 7 0 chr4 98443775 98444072 -85844590 + AluSx SINE Alu 6 304 -8 582 236 130 6 chr4 98444582 98444743 -85843919 + MER5A DNA MER1_type 1 181 -8 418 156 62 0 chr4 98444888 98444978 -85843684 + AluJ/FRAM SINE Alu 217 310 0 3868 174 28 7 chr4 98444978 98445727 -85842935 - L1MB3 LINE L1 -7 6176 5412 48 53 0 0 chr4 98445729 98445805 -85842857 + AT_rich Low_complexity Low_complexity 1 76 0 342 86 99 12 chr4 98445805 98445967 -85842695 + (TA)n Simple_repeat Simple_repeat 1 176 0 1884 166 0 3 chr4 98446264 98446559 -85842103 + AluJb SINE Alu 1 294 -18 290 146 64 0 chr4 98446559 98446669 -85841993 + (TA)n Simple_repeat Simple_repeat 2 118 0 23 78 0 0 chr4 98447037 98447088 -85841574 + AT_rich Low_complexity Low_complexity 1 51 0 294 167 0 0 chr4 98447318 98447366 -85841296 - HERVL40 LTR ERVL -2961 2569 2522 348 222 51 68 chr4 98447519 98447636 -85841026 - HERVL40 LTR ERVL -4103 1427 1313 1577 91 10 0 chr4 98448015 98448224 -85840438 - AluSp SINE Alu -16 297 87 324 70 0 0 chr4 98448224 98448267 -85840395 - AluSp SINE Alu -258 43 1 867 238 17 38 chr4 98448296 98448531 -85840131 - HERVL40 LTR ERVL -4664 866 637 30 0 0 0 chr4 98448699 98448729 -85839933 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr4 98448783 98448817 -85839845 + AT_rich Low_complexity Low_complexity 1 34 0 773 256 33 47 chr4 98449030 98449245 -85839417 + MIR SINE MIR 13 224 -38 961 234 117 81 chr4 98449436 98449592 -85839070 - MLT1D LTR MaLR 0 505 356 806 154 0 22 chr4 98449592 98449728 -85838934 - FLAM_C SINE Alu 0 133 1 961 234 117 81 chr4 98449728 98450040 -85838622 - MLT1D LTR MaLR -149 356 20 213 159 65 47 chr4 98450231 98450338 -85838324 + (TATAA)n Simple_repeat Simple_repeat 2 110 0 338 313 106 5 chr4 98450371 98450588 -85838074 + L1M4 LINE L1 3622 3860 -2286 1976 117 28 3 chr4 98450787 98451078 -85837584 - AluSx SINE Alu -14 298 1 916 147 0 0 chr4 98451541 98451670 -85836992 - FLAM_C SINE Alu -3 130 2 2225 99 0 16 chr4 98451756 98452060 -85836602 + AluSg SINE Alu 1 299 -11 313 270 66 15 chr4 98452163 98452300 -85836362 - L1MB8 LINE L1 -1 6177 6034 2190 110 0 26 chr4 98452321 98452630 -85836032 - AluSx SINE Alu -11 301 1 2242 74 32 0 chr4 98453591 98453874 -85834788 - AluSc SINE Alu -17 292 1 279 180 16 0 chr4 98454046 98454107 -85834555 - AluJ/FLAM SINE Alu -240 62 1 365 294 55 0 chr4 98454616 98454725 -85833937 - L2 LINE L2 -4 3309 3195 600 187 148 84 chr4 98455828 98456031 -85832631 - MIR SINE MIR -32 230 15 1815 131 39 14 chr4 98456372 98456655 -85832007 - AluJo SINE Alu -22 290 1 492 182 149 25 chr4 98456916 98457037 -85831625 + FLAM_C SINE Alu 3 138 -5 305 197 26 0 chr4 98457164 98457240 -85831422 + L1MC5 LINE L1 7701 7778 -183 190 291 0 0 chr4 98457355 98457410 -85831252 + MIR SINE MIR 152 206 -56 315 287 23 0 chr4 98457652 98457739 -85830923 + L1MC4 LINE L1 6615 6703 -1339 513 225 0 0 chr4 98457740 98457860 -85830802 + (TA)n Simple_repeat Simple_repeat 1 120 0 333 303 0 0 chr4 98457864 98457953 -85830709 + L1MC4 LINE L1 6615 6703 -1339 2463 83 0 0 chr4 98458075 98458375 -85830287 - AluSg SINE Alu -10 300 1 21 36 0 0 chr4 98458563 98458591 -85830071 + AT_rich Low_complexity Low_complexity 1 28 0 247 249 41 96 chr4 98459054 98459251 -85829411 - L1M4 LINE L1 -785 5361 5176 1617 109 0 0 chr4 98459267 98459502 -85829160 - AluSg/x SINE Alu 0 311 77 1800 134 34 4 chr4 98460171 98460433 -85828229 + AluSx SINE Alu 1 270 -42 874 124 0 0 chr4 98460442 98460563 -85828099 + AluSg/x SINE Alu 174 294 -16 852 39 0 0 chr4 98461133 98461237 -85827425 + (TC)n Simple_repeat Simple_repeat 2 105 0 2236 101 3 0 chr4 98461237 98461525 -85827137 - AluSq SINE Alu -24 289 1 319 320 58 68 chr4 98461700 98461994 -85826668 - L1MC/D LINE L1 -2108 5677 5387 344 281 0 0 chr4 98462967 98463049 -85825613 + (CCA)n Simple_repeat Simple_repeat 3 84 0 181 258 16 16 chr4 98463211 98463273 -85825389 + L2 LINE L2 1355 1416 -1898 186 43 0 0 chr4 98463345 98463368 -85825294 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 2295 106 0 0 chr4 98463372 98463675 -85824987 - AluSx SINE Alu -9 303 1 290 73 0 0 chr4 98463863 98463904 -85824758 - Alu SINE Alu -259 41 1 2051 141 3 0 chr4 98463905 98464204 -85824458 - AluSx SINE Alu -12 300 1 2182 99 7 0 chr4 98464425 98464717 -85823945 + AluSx SINE Alu 1 294 -18 469 203 25 6 chr4 98465081 98465239 -85823423 + GA-rich Low_complexity Low_complexity 2 162 0 977 122 7 0 chr4 98466521 98466668 -85821994 + MLT1B LTR MaLR 243 390 0 353 200 56 11 chr4 98466833 98466923 -85821739 + MER58B DNA MER1_type 247 340 -1 1117 79 7 0 chr4 98467932 98468071 -85820591 + AluSg/x SINE Alu 159 298 -12 183 360 0 0 chr4 98468198 98468248 -85820414 + MIR SINE MIR 205 254 -8 1210 110 0 0 chr4 98468822 98468977 -85819685 + AluSq SINE Alu 1 155 -158 1393 200 24 89 chr4 98469322 98469779 -85818883 - MLT1C LTR MaLR 0 467 43 2097 116 10 7 chr4 98469779 98470080 -85818582 - AluSx SINE Alu -10 302 1 1393 200 24 89 chr4 98470080 98470116 -85818546 - MLT1C LTR MaLR -424 43 6 31 76 0 0 chr4 98470151 98470217 -85818445 + AT_rich Low_complexity Low_complexity 1 66 0 201 189 57 19 chr4 98470451 98470504 -85818158 - MIR3 SINE MIR -45 163 109 633 215 33 0 chr4 98470554 98470675 -85817987 - FLAM_A SINE Alu -8 125 1 1061 194 13 84 chr4 98470925 98471224 -85817438 + AluJo SINE Alu 20 297 -15 21 36 0 0 chr4 98472585 98472613 -85816049 + AT_rich Low_complexity Low_complexity 1 28 0 5814 149 24 26 chr4 98473161 98474275 -85814387 - L1MC1 LINE L1 -6 6327 5215 214 134 74 20 chr4 98474375 98474524 -85814138 + (TA)n Simple_repeat Simple_repeat 1 157 0 504 249 0 0 chr4 98474655 98475301 -85813361 + (TA)n Simple_repeat Simple_repeat 1 646 0 246 250 48 0 chr4 98475302 98475386 -85813276 + L1MC4 LINE L1 6615 6702 -1340 345 188 0 0 chr4 98475397 98475477 -85813185 + (TA)n Simple_repeat Simple_repeat 1 80 0 238 209 75 0 chr4 98475478 98475545 -85813117 + L1MCa LINE L1 1997 2068 -4358 395 258 31 13 chr4 98475625 98475784 -85812878 + (TA)n Simple_repeat Simple_repeat 2 163 0 221 274 0 0 chr4 98475865 98475916 -85812746 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 292 331 25 42 chr4 98476616 98476783 -85811879 + MIR SINE MIR 19 192 -62 283 280 101 63 chr4 98478205 98478473 -85810189 - L1MC/D LINE L1 -2216 5592 5315 2198 145 38 3 chr4 98478475 98478847 -85809815 - L1PA15 LINE L1 0 6165 5781 910 207 0 5 chr4 98478858 98479061 -85809601 - L1PA15 LINE L1 -1248 4898 4697 * 2388 115 30 0 chr4 98479058 98479422 -85809240 - L1P4 LINE L1 -346 5819 5445 565 181 30 30 chr4 98479406 98479539 -85809123 + L1P4 LINE L1 5535 5667 -507 * 545 59 0 0 chr4 98479639 98479707 -85808955 + AluSg/x SINE Alu 68 135 -175 2244 91 0 7 chr4 98479709 98480005 -85808657 + AluSg SINE Alu 4 297 -13 2022 113 58 113 chr4 98480005 98480394 -85808268 + Tigger3(Golem) DNA MER2_type 202 611 -2418 2273 88 0 26 chr4 98480394 98480702 -85807960 + AluSx SINE Alu 1 300 -12 2022 113 58 113 chr4 98480702 98480990 -85807672 + Tigger3(Golem) DNA MER2_type 611 2642 -387 1270 151 0 0 chr4 98483726 98483912 -85804750 + AluJo SINE Alu 1 186 -126 1610 101 10 0 chr4 98484013 98484221 -85804441 + AluSg/x SINE Alu 65 274 -36 1780 147 3 21 chr4 98485058 98485344 -85803318 - AluJb SINE Alu -30 282 2 595 26 39 0 chr4 98485648 98485725 -85802937 - AluY SINE Alu -14 297 218 21 36 0 0 chr4 98486516 98486544 -85802118 + AT_rich Low_complexity Low_complexity 1 28 0 2057 133 7 0 chr4 98486954 98487247 -85801415 - AluSx SINE Alu -15 297 3 365 288 90 61 chr4 98487277 98487555 -85801107 - L1ME LINE L1 -457 5664 5379 2121 153 81 85 chr4 98487700 98488132 -85800530 - L1M3 LINE L1 -366 5817 5385 1391 193 58 7 chr4 98488132 98488407 -85800255 - AluJo SINE Alu -23 289 1 2121 153 81 85 chr4 98488407 98488464 -85800198 - L1M3 LINE L1 -798 5385 5329 2044 148 0 0 chr4 98488464 98488761 -85799901 - AluSx SINE Alu -15 297 1 2121 153 81 85 chr4 98488761 98488854 -85799808 - L1M3 LINE L1 -854 5329 5240 700 158 68 8 chr4 98490996 98491129 -85797533 + MER5A DNA MER1_type 49 189 0 2424 41 3 3 chr4 98491843 98492138 -85796524 - AluY SINE Alu -16 295 1 416 164 21 7 chr4 98492207 98492347 -85796315 + (TA)n Simple_repeat Simple_repeat 1 142 0 2217 84 18 0 chr4 98492347 98492631 -85796031 - AluSq SINE Alu -24 289 1 449 257 73 39 chr4 98492980 98493159 -85795503 - MER63A DNA MER1_type 0 210 26 1361 164 75 20 chr4 98493289 98493581 -85795081 + AluJo SINE Alu 1 308 -4 1891 103 60 18 chr4 98494051 98494332 -85794330 - AluSg SINE Alu -17 293 1 1119 112 0 35 chr4 98494611 98494780 -85793882 - AluSg/x SINE Alu -20 290 128 213 154 0 0 chr4 98495122 98495161 -85793501 + G-rich Low_complexity Low_complexity 4 42 0 360 157 12 48 chr4 98496469 98496552 -85792110 + L1ME2 LINE L1 6085 6164 0 249 198 188 20 chr4 98496655 98496756 -85791906 + L1MC4 LINE L1 7916 8033 -9 2253 99 7 0 chr4 98496870 98497163 -85791499 - AluSq SINE Alu -18 295 1 2040 71 4 0 chr4 98498688 98498956 -85789706 + L1P2 LINE L1 5408 5676 -479 500 191 0 0 chr4 98499822 98499916 -85788746 - L1MC1 LINE L1 -1 6332 6239 4808 87 6 3 chr4 98499916 98500633 -85788029 + L1PA11 LINE L1 5205 5923 -251 5708 161 12 7 chr4 98500740 98501829 -85786833 + L1MC1 LINE L1 5158 6251 -82 3073 153 33 0 chr4 98501830 98502373 -85786289 - L1PA11 LINE L1 0 6174 5614 1732 190 0 7 chr4 98503140 98503450 -85785212 + AluJo SINE Alu 1 308 -4 213 154 0 0 chr4 98503572 98503611 -85785051 + A-rich Low_complexity Low_complexity 1 39 0 200 173 0 135 chr4 98503757 98503809 -85784853 + L2 LINE L2 3267 3311 -2 4094 44 0 0 chr4 98504082 98504585 -85784077 - L1PA4 LINE L1 0 6155 5653 1815 43 9 0 chr4 98504585 98504817 -85783845 + L1P LINE L1 5137 5370 -776 304 217 141 0 chr4 98504920 98505012 -85783650 + MER5C DNA MER1_type 34 138 -186 694 135 0 0 chr4 98505075 98505186 -85783476 + L1PA13 LINE L1 6042 6152 -11 240 169 0 51 chr4 98505199 98505258 -85783404 + MER5C DNA MER1_type 268 323 -1 33 73 0 0 chr4 98505388 98505456 -85783206 + AT_rich Low_complexity Low_complexity 1 68 0 22 0 0 0 chr4 98505653 98505675 -85782987 + AT_rich Low_complexity Low_complexity 1 22 0 2487 77 3 0 chr4 98505910 98506221 -85782441 - AluSp SINE Alu -1 312 1 905 111 0 15 chr4 98506704 98506839 -85781823 - AluSp SINE Alu -180 133 1 1201 320 146 45 chr4 98506842 98507983 -85780679 + L2 LINE L2 2013 3265 -7 236 183 0 83 chr4 98508111 98508171 -85780491 - L2 LINE L2 0 3313 3259 470 152 0 0 chr4 98508386 98508465 -85780197 + L1PB4 LINE L1 6066 6144 -12 6606 230 59 32 chr4 98509061 98509614 -85779048 - L1MEc LINE L1 -1873 4667 4130 2012 93 48 0 chr4 98509614 98509907 -85778755 - AluSg SINE Alu 0 306 1 6606 230 59 32 chr4 98509907 98511611 -85777051 - L1MEc LINE L1 -2410 4130 2389 327 180 90 0 chr4 98515193 98515282 -85773380 - L1M4 LINE L1 -1641 4505 4409 1854 196 90 17 chr4 98515287 98515700 -85772962 + MSTB2 LTR MaLR 15 457 0 4996 210 48 111 chr4 98515700 98517462 -85771200 + MSTB2-int LTR MaLR 1 1651 0 1792 182 89 56 chr4 98517466 98517894 -85770768 + MSTB2 LTR MaLR 16 457 0 2701 250 69 32 chr4 98517895 98519072 -85769590 - L1M4 LINE L1 -1741 4405 3186 1821 159 0 17 chr4 98519173 98519469 -85769193 - AluJb SINE Alu -21 291 1 1821 151 17 17 chr4 98519550 98519841 -85768821 + AluJo SINE Alu 1 291 -21 300 233 133 89 chr4 98520585 98520765 -85767897 - L1MEc LINE L1 -4550 1990 1803 235 259 29 94 chr4 98521247 98521384 -85767278 + L1M4b LINE L1 91 216 -6643 2433 73 50 6 chr4 98521384 98521724 -85766938 + THE1A LTR MaLR 1 355 0 235 259 29 94 chr4 98521724 98521756 -85766906 + L1M4b LINE L1 216 249 -6610 775 86 0 0 chr4 98521998 98522212 -85766450 + L1PA8 LINE L1 6066 6279 0 21 57 0 0 chr4 98522378 98522413 -85766249 + AT_rich Low_complexity Low_complexity 1 35 0 760 29 10 39 chr4 98524320 98524424 -85764238 + L1PA7 LINE L1 6050 6150 -4 248 159 0 63 chr4 98524484 98524547 -85764115 + GA-rich Low_complexity Low_complexity 3 61 0 249 208 139 0 chr4 98524647 98524719 -85763943 - MER5C DNA MER1_type -209 115 34 249 198 60 86 chr4 98525018 98525134 -85763528 - MIR SINE MIR -55 207 95 237 178 0 0 chr4 98525185 98525230 -85763432 + (TG)n Simple_repeat Simple_repeat 2 46 0 309 238 87 16 chr4 98525243 98525472 -85763190 - L1M4c LINE L1 -3897 3062 2847 2320 78 0 7 chr4 98525513 98525809 -85762853 - AluY SINE Alu -17 294 1 1037 219 9 42 chr4 98525835 98525974 -85762688 - AluJo SINE Alu -66 246 115 2427 126 78 0 chr4 98525974 98526371 -85762291 - MSTA LTR MaLR 0 428 1 1037 219 9 42 chr4 98526371 98526446 -85762216 - AluJo SINE Alu -197 115 39 321 89 0 0 chr4 98526644 98526689 -85761973 + (CA)n Simple_repeat Simple_repeat 2 46 0 2172 226 116 10 chr4 98526691 98527752 -85760910 - L1M4c LINE L1 -4550 2409 1267 1738 156 73 0 chr4 98527881 98528195 -85760467 + MER1B DNA MER1_type 1 337 0 484 251 148 36 chr4 98529109 98529332 -85759330 + MIR SINE MIR 5 252 -10 1617 136 44 4 chr4 98529756 98530029 -85758633 - AluJb SINE Alu -28 284 1 22 70 0 0 chr4 98530620 98530663 -85757999 + AT_rich Low_complexity Low_complexity 1 43 0 469 123 0 0 chr4 98531072 98531145 -85757517 + MLT1A2 LTR MaLR 302 374 0 390 311 89 0 chr4 98531222 98531357 -85757305 - L2 LINE L2 -4 3309 3163 292 263 44 136 chr4 98532024 98532252 -85756410 + L2 LINE L2 2986 3192 -80 2316 75 7 0 chr4 98535070 98535362 -85753300 - AluSx SINE Alu -18 294 1 800 122 8 0 chr4 98536190 98536313 -85752349 - L1MB3 LINE L1 -9 6174 6051 859 143 0 14 chr4 98536314 98536454 -85752208 - FRAM SINE Alu -5 171 34 594 173 8 8 chr4 98536454 98536581 -85752081 - L1MB2 LINE L1 -114 6057 5931 231 274 0 16 chr4 98537000 98537062 -85751600 - MIR SINE MIR -46 216 156 23 68 0 0 chr4 98537268 98537312 -85751350 + AT_rich Low_complexity Low_complexity 1 44 0 181 286 33 66 chr4 98538042 98538133 -85750529 - MER5A DNA MER1_type 0 189 102 717 195 16 43 chr4 98538431 98538616 -85750046 - MER58A DNA MER1_type -1 223 44 279 254 16 0 chr4 98540613 98540676 -85747986 - L2 LINE L2 -5 3308 3245 8562 237 40 28 chr4 98540999 98543076 -85745586 - L1MCa LINE L1 -1127 5299 3250 1734 181 7 4 chr4 98543076 98543386 -85745276 - AluJb SINE Alu 0 311 1 8562 237 40 28 chr4 98543386 98543830 -85744832 - L1MCa LINE L1 -3176 3250 2813 616 200 58 0 chr4 98543830 98543950 -85744712 - FLAM_A SINE Alu -6 127 1 8562 237 40 28 chr4 98543950 98544500 -85744162 - L1MCa LINE L1 -3613 2813 2271 2129 105 34 3 chr4 98544500 98544795 -85743867 - AluSq SINE Alu -9 304 1 8562 237 40 28 chr4 98544795 98545647 -85743015 - L1MCa LINE L1 -4155 2271 1180 675 187 32 0 chr4 98545940 98546063 -85742599 - FLAM_A SINE Alu -6 127 1 281 302 104 38 chr4 98546803 98547015 -85741647 + L2 LINE L2 2252 2477 -837 2484 65 3 10 chr4 98547073 98547380 -85741282 + AluY SINE Alu 1 305 -6 655 343 82 50 chr4 98547538 98548474 -85740188 + L2 LINE L2 1795 2760 -554 185 290 178 37 chr4 98548591 98548698 -85739964 + L2 LINE L2 3127 3248 -24 785 172 40 0 chr4 98548992 98549143 -85739519 + ERVL LTR ERVL 916 1072 -4692 389 207 24 0 chr4 98549144 98549226 -85739436 + L1M3de LINE L1 2048 2131 -4522 251 235 59 0 chr4 98549913 98549981 -85738681 + MIR3 SINE MIR 112 183 -25 27 49 0 0 chr4 98551200 98551241 -85737421 + AT_rich Low_complexity Low_complexity 1 41 0 408 165 134 41 chr4 98551558 98551655 -85737007 + FLAM_A SINE Alu 1 106 -36 505 329 157 30 chr4 98552112 98552865 -85735797 + L2 LINE L2 2451 3313 0 28 0 0 0 chr4 98553610 98553638 -85735024 + AT_rich Low_complexity Low_complexity 1 28 0 580 368 108 19 chr4 98553993 98554550 -85734112 + L2 LINE L2 2413 3015 -257 401 148 193 0 chr4 98554560 98554648 -85734014 - Tigger1 DNA MER2_type -1 2417 2313 195 345 17 0 chr4 98555911 98555969 -85732693 - L2 LINE L2 0 3272 3214 291 340 70 13 chr4 98556295 98556451 -85732211 - MIR3 SINE MIR -4 204 40 187 331 61 54 chr4 98557266 98557414 -85731248 + L2 LINE L2 3119 3267 -5 485 251 102 44 chr4 98557580 98557745 -85730917 + MIR SINE MIR 6 176 -65 190 309 71 12 chr4 98557741 98557825 -85730837 + L2 LINE L2 2918 3006 -307 * 521 335 25 5 chr4 98557880 98558083 -85730579 + L2 LINE L2 3105 3311 -2 932 220 0 0 chr4 98558679 98558852 -85729810 + FRAM SINE Alu 1 173 -3 278 127 36 0 chr4 98560177 98560232 -85728430 - L1MA9 LINE L1 -1 6311 6255 23 54 0 0 chr4 98560632 98560669 -85727993 + AT_rich Low_complexity Low_complexity 1 37 0 278 118 98 7 chr4 98560669 98560822 -85727840 + (TA)n Simple_repeat Simple_repeat 2 168 0 39 0 0 0 chr4 98560837 98560876 -85727786 + AT_rich Low_complexity Low_complexity 1 39 0 641 137 10 0 chr4 98561271 98561373 -85727289 + MER33 DNA MER1_type 25 127 -197 1369 138 71 44 chr4 98561377 98561674 -85726988 + L1MA9 LINE L1 6007 6311 -1 770 132 86 5 chr4 98561746 98561943 -85726719 + MER33 DNA MER1_type 150 362 -1 2333 117 0 0 chr4 98563617 98563926 -85724736 - AluSq SINE Alu -4 309 1 379 239 137 17 chr4 98564199 98564316 -85724346 - MIR3 SINE MIR -41 167 37 378 226 83 105 chr4 98564554 98564820 -85723842 - MLT1J LTR MaLR -140 371 112 198 320 126 18 chr4 98565134 98565356 -85723306 - L2 LINE L2 -562 2752 2507 959 271 65 21 chr4 98565526 98565954 -85722708 + LTR16B LTR ERVL 18 464 0 326 269 118 0 chr4 98567208 98567327 -85721335 + MLT1J LTR MaLR 305 437 -74 280 254 71 100 chr4 98567734 98568014 -85720648 + MLT1J LTR MaLR 100 371 -140 579 259 99 21 chr4 98568110 98568353 -85720309 + MIR SINE MIR 1 262 0 358 197 0 0 chr4 98568876 98568937 -85719725 + L2 LINE L2 3250 3310 -3 1940 172 122 5 chr4 98568993 98569418 -85719244 + MLT2B2 LTR ERVL 1 475 -40 25 0 0 0 chr4 98569418 98569443 -85719219 + AT_rich Low_complexity Low_complexity 1 25 0 1587 163 57 115 chr4 98569443 98569879 -85718783 - MER47B DNA MER2_type -7 411 1 268 159 0 0 chr4 98569879 98569918 -85718744 + MLT2B2 LTR ERVL 474 512 -8 2945 201 105 41 chr4 98569923 98570047 -85718615 + ERVL-B2 LTR ERVL 2 117 -5647 1175 181 173 0 chr4 98570047 98570290 -85718372 - AluJo SINE Alu -17 285 1 2945 201 105 41 chr4 98570290 98570432 -85718230 + ERVL-B2 LTR ERVL 117 248 -5516 2336 92 3 0 chr4 98570432 98570727 -85717935 - AluSg SINE Alu -14 296 1 2945 201 105 41 chr4 98570727 98571093 -85717569 + ERVL-B2 LTR ERVL 248 701 -5063 1889 144 27 3 chr4 98571093 98571391 -85717271 - AluJb SINE Alu -7 305 1 2945 201 105 41 chr4 98571391 98571565 -85717097 + ERVL-B2 LTR ERVL 701 862 -4902 716 164 48 7 chr4 98571669 98571815 -85716847 - MLT1A1 LTR MaLR -213 152 1 595 186 0 0 chr4 98571911 98572008 -85716654 + AluJ/FLAM SINE Alu 3 99 -213 703 112 41 0 chr4 98572008 98572106 -85716556 + AluJo/FRAM SINE Alu 178 279 -33 24 32 0 0 chr4 98572555 98572586 -85716076 + AT_rich Low_complexity Low_complexity 1 31 0 294 320 29 19 chr4 98573008 98573111 -85715551 + MIR3 SINE MIR 74 177 -31 1318 235 100 15 chr4 98575004 98575395 -85713267 - MLT1J2 LTR MaLR -21 429 6 1979 120 0 0 chr4 98575474 98575740 -85712922 + AluSx SINE Alu 37 302 -10 304 299 86 26 chr4 98575844 98575961 -85712701 + L2 LINE L2 3149 3272 0 480 259 56 7 chr4 98576501 98576644 -85712018 - MLT1L LTR MaLR 0 615 466 901 70 86 0 chr4 98577003 98577131 -85711531 - MER85 DNA T2_type 0 139 1 1115 37 0 0 chr4 98578464 98578600 -85710062 + L1PA4 LINE L1 6017 6152 -3 180 0 0 0 chr4 98578647 98578667 -85709995 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 848 123 8 0 chr4 98578672 98578794 -85709868 - FLAM_C SINE Alu -10 123 1 25 0 0 0 chr4 98579077 98579102 -85709560 + AT_rich Low_complexity Low_complexity 1 25 0 268 333 0 10 chr4 98579405 98579501 -85709161 + MLT1J LTR MaLR 3 97 -414 21 0 0 0 chr4 98579697 98579718 -85708944 + AT_rich Low_complexity Low_complexity 1 21 0 583 265 106 6 chr4 98581492 98581662 -85707000 - MIR SINE MIR -2 260 74 238 311 78 0 chr4 98581840 98581943 -85706719 - L2 LINE L2 -933 2381 2271 248 297 117 59 chr4 98582129 98582402 -85706260 - L2 LINE L2 -1320 1994 1706 28 29 0 0 chr4 98582402 98582437 -85706225 + AT_rich Low_complexity Low_complexity 1 35 0 1925 118 86 0 chr4 98582442 98582756 -85705906 - L1MB2 LINE L1 -3 6168 5828 472 272 46 23 chr4 98583921 98584094 -85704568 - L1MC4a LINE L1 -1929 5879 5703 1246 268 118 25 chr4 98584154 98584829 -85703833 + LTR41 LTR ERVL 2 763 -10 468 111 40 71 chr4 98585052 98585151 -85703511 + L1P LINE L1 4016 4111 -2035 1996 118 68 0 chr4 98585387 98585725 -85702937 + MER46B DNA MER2_type 1 236 0 604 310 63 37 chr4 98586993 98587293 -85701369 + MLT1J LTR MaLR 97 404 -107 248 286 121 0 chr4 98587465 98587556 -85701106 - L2 LINE L2 -8 3264 3163 223 235 29 0 chr4 98587712 98587780 -85700882 + (TA)n Simple_repeat Simple_repeat 1 70 0 284 212 45 0 chr4 98588097 98588163 -85700499 + MIR SINE MIR 96 164 -98 1996 118 3 3 chr4 98589125 98589412 -85699250 - AluSx SINE Alu -25 287 1 1978 135 3 10 chr4 98589868 98590042 -85698620 - AluSx SINE Alu 0 307 134 2235 95 20 20 chr4 98590042 98590348 -85698314 - AluSc SINE Alu -3 306 1 1978 135 3 10 chr4 98590348 98590482 -85698180 - AluSx SINE Alu -173 134 1 207 348 83 28 chr4 98590507 98590688 -85697974 - L3b LINE CR1 -110 1473 1283 2135 94 17 0 chr4 98590728 98591026 -85697636 - AluSq SINE Alu -10 303 1 1134 201 31 128 chr4 98591470 98591884 -85696778 + MLT1A2 LTR MaLR 1 374 0 2352 98 0 0 chr4 98593968 98594273 -85694389 - AluSq SINE Alu -8 305 1 2223 58 4 7 chr4 98594567 98594844 -85693818 - AluY SINE Alu -9 302 27 234 0 0 0 chr4 98595091 98595117 -85693545 + (CA)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chr4 98595308 98595336 -85693326 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr4 98595530 98595565 -85693097 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr4 98595776 98595807 -85692855 + AT_rich Low_complexity Low_complexity 1 31 0 4589 186 110 3 chr4 98596002 98596457 -85692205 - L1MC2 LINE L1 -22 6322 5917 2211 116 3 3 chr4 98596457 98596767 -85691895 - AluSx SINE Alu -2 310 1 4589 186 110 3 chr4 98596767 98597640 -85691022 - L1MC2 LINE L1 -427 5917 4873 685 224 151 119 chr4 98597642 98598187 -85690475 + L2 LINE L2 2752 3312 -1 282 310 30 10 chr4 98598300 98598400 -85690262 - L1MC2 LINE L1 -1978 4168 4067 23 0 0 0 chr4 98598780 98598803 -85689859 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr4 98598941 98598963 -85689699 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 512 186 0 0 chr4 98599583 98599669 -85688993 - AluSg/x SINE Alu -20 290 205 180 0 0 0 chr4 98599848 98599868 -85688794 + (CA)n Simple_repeat Simple_repeat 2 21 0 2292 103 0 0 chr4 98600488 98600778 -85687884 - AluSx SINE Alu -18 294 5 304 265 4 136 chr4 98601178 98601283 -85687379 - L1M4 LINE L1 -1148 4998 4945 1607 178 10 49 chr4 98601283 98601587 -85687075 - AluJb SINE Alu 0 312 21 304 265 4 136 chr4 98601587 98601738 -85686924 - L1M4 LINE L1 -1201 4945 4776 4256 160 65 3 chr4 98602879 98603603 -85685059 + Tigger7 DNA MER2_type 2 770 -1717 1398 130 46 0 chr4 98603603 98603841 -85684821 + Tigger7 DNA MER2_type 2218 2466 -121 377 209 91 9 chr4 98603952 98604062 -85684600 + Tigger7 DNA MER2_type 2335 2453 -38 2643 184 62 25 chr4 98605408 98605479 -85683183 + L1MCa LINE L1 2 69 -6357 2267 76 3 20 chr4 98605479 98605781 -85682881 + AluSc SINE Alu 4 300 -9 2643 184 62 25 chr4 98605781 98606301 -85682361 + L1MCa LINE L1 69 615 -5811 4618 158 110 34 chr4 98606334 98607567 -85681095 + L1MCa LINE L1 728 2139 -4287 1178 87 130 11 chr4 98607670 98607854 -85680808 + AluSc SINE Alu 96 301 -8 258 32 0 0 chr4 98607854 98607885 -85680777 + (TA)n Simple_repeat Simple_repeat 1 31 0 399 324 0 9 chr4 98608006 98608111 -85680551 - LTR67 LTR ERVL -405 152 49 1533 181 10 38 chr4 98608133 98608447 -85680215 + AluJo SINE Alu 1 305 -7 1505 275 92 35 chr4 98608507 98609175 -85679487 - L1MDa LINE L1 -2364 4176 3548 2204 113 0 13 chr4 98609175 98609484 -85679178 - AluSx SINE Alu -3 309 5 1505 275 92 35 chr4 98609484 98610074 -85678588 - L1MDa LINE L1 -2992 3548 2846 285 229 68 0 chr4 98610255 98610373 -85678289 - L1MDa LINE L1 -3931 2609 2484 30 0 0 0 chr4 98610523 98610553 -85678109 + AT_rich Low_complexity Low_complexity 1 30 0 763 279 20 12 chr4 98610651 98610895 -85677767 - L1ME1 LINE L1 -5 6161 5916 1232 117 45 0 chr4 98610896 98611075 -85677587 + AluSq SINE Alu 1 187 -126 26354 93 22 10 chr4 98611075 98614892 -85673770 - L1P LINE L1 -2281 3865 2 2323 226 46 10 chr4 98614912 98615540 -85673122 - L1ME1 LINE L1 -969 5177 4527 24 0 0 0 chr4 98616143 98616167 -85672495 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr4 98617282 98617318 -85671344 + AT_rich Low_complexity Low_complexity 1 36 0 1362 142 183 22 chr4 98617788 98618111 -85670551 - THE1C LTR MaLR 0 375 1 9963 106 53 14 chr4 98618111 98619632 -85669030 - THE1C-int LTR MaLR 0 1580 1 1878 98 74 57 chr4 98619632 98619998 -85668664 - THE1C LTR MaLR -3 372 1 204 255 52 105 chr4 98620164 98620317 -85668345 - L2 LINE L2 0 3313 3169 212 315 56 22 chr4 98620363 98620452 -85668210 - L2 LINE L2 -280 3033 2942 277 277 91 6 chr4 98620718 98620879 -85667783 + MIR SINE MIR 23 198 -64 694 234 5 49 chr4 98620884 98621068 -85667594 - MIR SINE MIR -34 228 53 2695 250 79 34 chr4 98621090 98621823 -85666839 - L1ME LINE L1 -650 5581 4763 1715 166 20 27 chr4 98621823 98622118 -85666544 - AluJo SINE Alu -19 293 1 2695 250 79 34 chr4 98622118 98622688 -85665974 - L1ME LINE L1 -1468 4763 4220 231 196 22 0 chr4 98622711 98622757 -85665905 - L1ME LINE L1 -644 5522 5476 * 481 259 90 13 chr4 98622754 98622999 -85665663 - L1MDa LINE L1 -4549 1666 1460 4565 154 38 56 chr4 98623031 98623889 -85664773 - L1MB3 LINE L1 -10 6173 5329 1347 165 124 0 chr4 98623889 98624156 -85664506 - AluJo SINE Alu -11 301 2 4565 154 38 56 chr4 98624156 98624468 -85664194 - L1MB3 LINE L1 -854 5329 5013 1676 149 39 82 chr4 98624849 98625238 -85663424 - THE1C LTR MaLR 0 375 4 708 71 18 27 chr4 98625241 98625353 -85663309 - THE1C-int LTR MaLR 0 1580 1470 433 34 34 0 chr4 98625454 98625513 -85663149 - THE1C-int LTR MaLR -85 1566 1506 9073 133 60 7 chr4 98625513 98626975 -85661687 - THE1C-int LTR MaLR -38 1542 3 1829 139 39 75 chr4 98626977 98627366 -85661296 - THE1C LTR MaLR 0 375 1 343 270 45 36 chr4 98627427 98627538 -85661124 - MIR SINE MIR -150 112 1 429 326 169 64 chr4 98627897 98628706 -85659956 + L2 LINE L2 231 1124 -2190 11791 225 29 26 chr4 98628716 98632582 -85656080 + L1PA13 LINE L1 1228 5173 -1624 181 194 56 0 chr4 98632633 98632669 -85655993 + MIR SINE MIR 75 112 -150 1607 126 49 27 chr4 98632676 98632939 -85655723 - AluJo SINE Alu -6 306 38 1372 158 150 4 chr4 98633507 98633767 -85654895 - AluSx SINE Alu -14 298 1 274 195 62 97 chr4 98633795 98633878 -85654784 + MIR3 SINE MIR 100 180 -28 2374 79 3 0 chr4 98633878 98634182 -85654480 - AluY SINE Alu -6 305 1 274 195 62 97 chr4 98634182 98634211 -85654451 + MIR3 SINE MIR 180 208 0 217 273 30 30 chr4 98634670 98634736 -85653926 - MIR SINE MIR -188 74 9 194 279 0 0 chr4 98634740 98634783 -85653879 + L2 LINE L2 3268 3310 -3 1070 186 100 86 chr4 98635214 98635574 -85653088 - MLT1A1 LTR MaLR 0 365 1 1586 160 12 113 chr4 98635575 98635981 -85652681 - MLT1A1 LTR MaLR 0 365 1 8015 196 38 36 chr4 98635981 98637712 -85650950 - MLT1A1-int LTR MaLR 0 1735 1 1385 177 25 122 chr4 98637712 98638112 -85650550 - MLT1A1 LTR MaLR -2 363 1 1174 344 95 26 chr4 98638467 98639408 -85649254 + L2 LINE L2 2050 3054 -218 223 244 0 0 chr4 98639503 98639548 -85649114 - L2 LINE L2 -8 3305 3261 475 278 63 0 chr4 98639890 98640016 -85648646 + MIR SINE MIR 7 140 -122 262 300 25 0 chr4 98640610 98640690 -85647972 + MIR3 SINE MIR 96 177 -31 1855 161 3 7 chr4 98640804 98641102 -85647560 - AluSx SINE Alu -15 297 1 410 359 60 16 chr4 98641992 98642176 -85646486 - MIR SINE MIR -70 192 1 239 233 155 39 chr4 98642302 98642405 -85646257 - MIR SINE MIR -145 117 3 2274 94 3 3 chr4 98642588 98642887 -85645775 - AluSg SINE Alu -11 299 1 275 281 52 59 chr4 98642904 98643039 -85645623 + MIR SINE MIR 58 191 -71 284 240 131 3 chr4 98643598 98643740 -85644922 + L1ME LINE L1 5321 5478 -821 689 211 102 0 chr4 98643756 98643922 -85644740 + MER5A DNA MER1_type 1 183 -6 579 253 121 48 chr4 98643933 98644206 -85644456 + L1ME LINE L1 5498 5790 -331 403 260 136 30 chr4 98644712 98644881 -85643781 + MIR SINE MIR 5 191 -71 24 32 0 0 chr4 98645176 98645207 -85643455 + AT_rich Low_complexity Low_complexity 1 31 0 486 263 167 35 chr4 98645399 98645746 -85642916 + L1MC/D LINE L1 5277 5577 -2231 452 185 166 19 chr4 98645746 98645903 -85642759 + MER104 DNA MER2_type 1 180 0 486 263 167 35 chr4 98645903 98646075 -85642587 + L1MC/D LINE L1 5577 5904 -1904 248 331 162 14 chr4 98646665 98646813 -85641849 + MIR SINE MIR 20 189 -73 593 248 7 15 chr4 98647056 98647193 -85641469 + MIR SINE MIR 20 155 -107 317 221 39 13 chr4 98647231 98647308 -85641354 + MER3 DNA MER1_type 1 79 -130 262 125 50 0 chr4 98647279 98647319 -85641343 - MER33 DNA MER1_type -276 48 7 * 201 74 0 0 chr4 98647348 98647375 -85641287 + (TATG)n Simple_repeat Simple_repeat 2 28 0 489 170 53 11 chr4 98647375 98647469 -85641193 - FLAM_A SINE Alu -25 117 20 21 0 0 0 chr4 98648130 98648151 -85640511 + AT_rich Low_complexity Low_complexity 1 21 0 240 256 50 0 chr4 98648457 98648528 -85640134 - MER5A DNA MER1_type -37 141 76 488 280 8 8 chr4 98648722 98648840 -85639822 - MER5B DNA MER1_type -60 118 1 374 89 18 0 chr4 98649299 98649355 -85639307 + U2 snRNA snRNA 4 60 -128 3336 30 0 2 chr4 98650338 98650742 -85637920 - L1PA4 LINE L1 0 6155 5753 1016 245 14 0 chr4 98651120 98651328 -85637334 - MIR SINE MIR -21 241 31 672 222 71 52 chr4 98652111 98652323 -85636339 - MIR SINE MIR -40 222 7 2306 108 0 3 chr4 98652675 98652982 -85635680 + AluSx SINE Alu 1 306 -6 23 33 0 0 chr4 98653510 98653540 -85635122 + AT_rich Low_complexity Low_complexity 1 30 0 764 173 0 0 chr4 98653864 98653991 -85634671 - FLAM_C SINE Alu -2 131 5 712 192 5 114 chr4 98654728 98654851 -85633811 + MER5B DNA MER1_type 1 136 -42 1950 91 0 8 chr4 98654851 98655114 -85633548 - AluSc SINE Alu -11 298 38 712 192 5 114 chr4 98655114 98655144 -85633518 + MER5B DNA MER1_type 136 134 -44 1452 160 46 43 chr4 98655144 98655448 -85633214 + AluJo SINE Alu 1 305 0 712 192 5 114 chr4 98655448 98655485 -85633177 + MER5B DNA MER1_type 133 172 -6 273 245 274 0 chr4 98655521 98655623 -85633039 + MER5A DNA MER1_type 59 188 -1 784 209 43 0 chr4 98655633 98655796 -85632866 - MER58B DNA MER1_type 0 341 172 5784 31 3 1 chr4 98655861 98656548 -85632114 + L1PA4 LINE L1 5466 6153 -2 2457 66 0 3 chr4 98656950 98657253 -85631409 - AluY SINE Alu -9 302 1 2327 114 0 0 chr4 98657390 98657697 -85630965 - AluSq SINE Alu -6 307 1 1064 146 86 193 chr4 98657719 98658138 -85630524 + MER63 DNA MER1_type 1 504 -556 1068 177 86 108 chr4 98658147 98658423 -85630239 + MER63 DNA MER1_type 676 956 -105 312 102 0 0 chr4 98658423 98658472 -85630190 + (CA)n Simple_repeat Simple_repeat 2 50 0 1848 143 25 11 chr4 98658474 98658754 -85629908 - AluJb SINE Alu -26 286 3 1068 177 86 108 chr4 98658754 98658846 -85629816 + MER63 DNA MER1_type 957 1039 -22 837 100 8 0 chr4 98759146 98759266 -85529396 - L1PA13 LINE L1 -297 5871 5751 1983 86 21 0 chr4 98759272 98759551 -85529111 + L1PA13 LINE L1 5867 6151 -12 415 241 97 46 chr4 98759977 98760172 -85528490 + LTR33 LTR ERVL 317 521 0 234 180 100 20 chr4 98761137 98761187 -85527475 + MIR SINE MIR 85 138 -124 243 196 0 0 chr4 98761208 98761254 -85527408 + L2 LINE L2 3252 3297 -16 279 304 51 57 chr4 98762213 98762371 -85526291 - MIR SINE MIR -71 191 35 2251 66 0 57 chr4 98762455 98762772 -85525890 - AluY SINE Alu -12 299 1 235 295 48 19 chr4 98764002 98764107 -85524555 + L1ME1 LINE L1 5942 6049 -117 265 62 77 0 chr4 98764156 98764221 -85524441 + (TA)n Simple_repeat Simple_repeat 1 70 0 296 74 130 0 chr4 98764325 98764379 -85524283 + AluSc SINE Alu 239 299 0 1827 143 30 36 chr4 98765444 98765745 -85522917 + AluSx SINE Alu 1 299 -13 992 283 91 27 chr4 98766787 98766944 -85521718 - MLT1L LTR MaLR -8 607 461 2269 101 3 0 chr4 98766944 98767240 -85521422 - AluSg SINE Alu -13 297 1 992 283 91 27 chr4 98767240 98767521 -85521141 - MLT1L LTR MaLR -154 461 141 835 184 13 0 chr4 98767686 98767838 -85520824 - MER20 DNA MER1_type 0 219 66 1149 121 12 0 chr4 98768843 98769071 -85519591 + AluY SINE Alu 136 365 0 547 306 21 5 chr4 98769296 98769482 -85519180 + MIR SINE MIR 70 258 -4 285 97 0 48 chr4 98769800 98769862 -85518800 + (TA)n Simple_repeat Simple_repeat 1 59 0 2064 121 19 3 chr4 98769910 98770217 -85518445 - AluSx SINE Alu 0 312 1 750 285 104 33 chr4 98770369 98770708 -85517954 - L1ME3A LINE L1 -234 6330 6016 2633 88 6 0 chr4 98770708 98771060 -85517602 + THE1A LTR MaLR 1 354 -1 750 285 104 33 chr4 98771060 98771319 -85517343 - L1ME3A LINE L1 -548 6016 5671 237 285 57 74 chr4 98771469 98771848 -85516814 + MLT1H LTR MaLR 53 533 -16 1077 291 80 33 chr4 98772215 98773203 -85515459 - L1ME3A LINE L1 -1353 5187 4154 2490 150 10 0 chr4 98773205 98773604 -85515058 + MER57A LTR ERV1 1 403 0 6180 132 6 19 chr4 98773604 98774546 -85514116 + MER57A-int LTR ERV1 1 930 -6607 * 13963 125 36 32 chr4 98774532 98776889 -85511773 + MER57A-int LTR ERV1 225 2571 -4966 2270 81 34 0 chr4 98776889 98777185 -85511477 + AluY SINE Alu 1 306 -5 13963 125 36 32 chr4 98777185 98778611 -85510051 + MER57A-int LTR ERV1 2571 3989 -3548 2112 138 0 0 chr4 98778611 98778908 -85509754 + AluSg1 SINE Alu 1 297 -12 13963 125 36 32 chr4 98778908 98779009 -85509653 + MER57A-int LTR ERV1 3989 4088 -3449 1918 158 0 7 chr4 98779009 98779306 -85509356 - AluSx SINE Alu -17 295 1 13963 125 36 32 chr4 98779306 98780864 -85507798 + MER57A-int LTR ERV1 4088 6413 -1124 2431 80 0 0 chr4 98780864 98781165 -85507497 - AluSq SINE Alu -12 301 1 13963 125 36 32 chr4 98781165 98781651 -85507011 + MER57A-int LTR ERV1 6413 6895 -642 207 186 0 0 chr4 98781653 98781696 -85506966 + (TAA)n Simple_repeat Simple_repeat 3 45 0 1884 85 42 0 chr4 98781696 98781956 -85506706 + MER57A-int LTR ERV1 6876 7146 -391 751 122 24 8 chr4 98781956 98782079 -85506583 + LTR54B LTR ERV1 3 127 -371 1390 122 94 8 chr4 98782079 98782324 -85506338 + MER57A-int LTR ERV1 7272 7537 0 2071 141 92 0 chr4 98782324 98782693 -85505969 + MER57A LTR ERV1 1 403 0 709 304 34 11 chr4 98782698 98783079 -85505583 - L1ME3A LINE L1 -2414 4126 3737 312 280 0 30 chr4 98783324 98783424 -85505238 - L1ME3A LINE L1 -3979 2561 2465 1723 126 4 0 chr4 98783696 98783942 -85504720 - AluSp SINE Alu -1 312 66 13713 185 21 14 chr4 98784216 98788392 -85500270 + L1PB2 LINE L1 2598 6866 -1 2272 201 9 14 chr4 98788548 98788742 -85499920 + MER89 LTR ERV1 4 197 -362 3986 97 9 0 chr4 98788742 98789291 -85499371 - MER41A LTR ERV1 0 554 1 2272 201 9 14 chr4 98789291 98789540 -85499122 + MER89 LTR ERV1 197 445 -114 401 240 0 50 chr4 98789561 98789661 -85499001 + L2 LINE L2 3219 3313 0 2163 120 3 13 chr4 98789955 98790271 -85498391 + AluSp SINE Alu 1 313 0 186 43 0 0 chr4 98791068 98791091 -85497571 + (CA)n Simple_repeat Simple_repeat 2 24 0 3989 145 20 1 chr4 98791778 98792460 -85496202 - L1MA4A LINE L1 0 7005 6311 376 164 0 0 chr4 98792461 98792534 -85496128 - L1MA4A LINE L1 -1776 5072 5000 1896 189 16 8 chr4 98792538 98793212 -85495450 - L1M1 LINE L1 -704 5596 4915 2679 175 40 44 chr4 98793218 98793894 -85494768 - L1M1 LINE L1 -1426 4720 4048 * 5460 170 16 26 chr4 98793862 98794890 -85493772 + L1P LINE L1 11 1027 -5119 2054 96 3 31 chr4 98794927 98795266 -85493396 + AluY SINE Alu 1 331 0 7058 53 8 1 chr4 98795272 98796412 -85492250 + L1PA6 LINE L1 5004 6149 -5 8114 211 34 20 chr4 98796413 98796447 -85492215 - L1MA4A LINE L1 -2040 4808 4776 2056 97 35 3 chr4 98796447 98796737 -85491925 - AluSc SINE Alu -10 299 1 8114 211 34 20 chr4 98796737 98797717 -85490945 - L1MA4A LINE L1 -2072 4776 3811 2074 105 28 0 chr4 98797717 98798002 -85490660 - AluSc SINE Alu -16 293 1 8114 211 34 20 chr4 98798002 98800609 -85488053 - L1MA4A LINE L1 -3037 3811 1130 221 342 20 34 chr4 98801093 98801242 -85487420 + MIR SINE MIR 78 224 -38 262 220 85 93 chr4 98801421 98801539 -85487123 - MER94 DNA DNA -16 118 2 1610 243 123 36 chr4 98801867 98802605 -85486057 + Charlie2a DNA MER1_type 1472 2285 -577 1984 94 70 30 chr4 98802605 98802904 -85485758 - AluY SINE Alu 0 311 1 1610 243 123 36 chr4 98802904 98802959 -85485703 + Charlie2a DNA MER1_type 2285 2334 -528 333 172 0 103 chr4 98803163 98803194 -85485468 - L1MA9 LINE L1 -38 6274 6241 1394 213 13 17 chr4 98803194 98803495 -85485167 - AluJo SINE Alu -12 300 1 333 172 0 103 chr4 98803495 98803579 -85485083 - L1MA9 LINE L1 -71 6241 6171 239 349 13 74 chr4 98804111 98804260 -85484402 + L2 LINE L2 2945 3084 -188 603 276 133 18 chr4 98804759 98805321 -85483341 + L1M4 LINE L1 2898 3524 -2622 2295 77 7 0 chr4 98805614 98805901 -85482761 + AluY SINE Alu 1 289 -22 1414 211 154 50 chr4 98805991 98806271 -85482391 - L1ME2 LINE L1 -164 6000 5751 198 0 0 0 chr4 98806271 98806293 -85482369 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 1414 211 154 50 chr4 98806293 98806577 -85482085 - L1ME2 LINE L1 -413 5751 5377 22 70 0 0 chr4 98807331 98807374 -85481288 + AT_rich Low_complexity Low_complexity 1 43 0 25 65 0 0 chr4 98807505 98807551 -85481111 + AT_rich Low_complexity Low_complexity 1 46 0 2163 96 14 0 chr4 98807810 98808090 -85480572 - AluSp SINE Alu -27 286 3 1030 67 0 0 chr4 98808521 98808655 -85480007 - L1MA1 LINE L1 -4 6298 6165 1785 110 4 0 chr4 98809299 98809544 -85479118 - AluSp SINE Alu -2 311 66 409 301 26 25 chr4 98809704 98809902 -85478760 - L1MEc LINE L1 -904 1883 1662 847 145 0 0 chr4 98809909 98810033 -85478629 + AluJb SINE Alu 1 124 -188 27 0 0 0 chr4 98810036 98810063 -85478599 + AT_rich Low_complexity Low_complexity 1 27 0 252 340 56 28 chr4 98810135 98810420 -85478242 - L1MEc LINE L1 -4862 1554 1262 1793 165 13 3 chr4 98810498 98810814 -85477848 - L1MC1 LINE L1 0 6333 6015 795 152 23 0 chr4 98810814 98810946 -85477716 + L1MC1 LINE L1 6199 6333 0 2169 153 20 22 chr4 98810957 98811363 -85477299 - L1MC1 LINE L1 -336 5997 5593 2071 128 7 3 chr4 98811364 98811661 -85477001 + AluSx SINE Alu 1 298 -14 2413 183 53 64 chr4 98811683 98812263 -85476399 - L1MEc LINE L1 -5834 592 19 567 310 69 72 chr4 98812273 98813211 -85475451 - L1MEd LINE L1 -5156 963 29 28 29 0 0 chr4 98813989 98814024 -85474638 + AT_rich Low_complexity Low_complexity 1 35 0 518 288 73 58 chr4 98814132 98814514 -85474148 + MLT1I LTR MaLR 21 408 -1 28 61 0 0 chr4 98815497 98815546 -85473116 + AT_rich Low_complexity Low_complexity 1 49 0 282 320 64 24 chr4 98815960 98816085 -85472577 - L2 LINE L2 -1 3312 3183 232 369 25 16 chr4 98818617 98818739 -85469923 + MIR SINE MIR 16 138 -70 199 260 0 78 chr4 98820682 98820759 -85467903 - MIR SINE MIR -81 181 111 * 223 236 18 0 chr4 98820714 98820769 -85467893 + MIR SINE MIR 126 181 -81 1625 181 0 11 chr4 98820820 98821097 -85467565 - AluJo SINE Alu -38 274 1 289 252 215 0 chr4 98821432 98821539 -85467123 + L2 LINE L2 2380 2509 -805 2132 114 3 7 chr4 98824340 98824646 -85464016 - AluSx SINE Alu -7 305 1 211 259 71 47 chr4 98824958 98825043 -85463619 - L2 LINE L2 -43 3270 3184 293 333 59 7 chr4 98825475 98825610 -85463052 - MIR3 SINE MIR -7 201 60 395 252 84 8 chr4 98827315 98827434 -85461228 - L3 LINE CR1 -1 1576 1449 241 301 138 35 chr4 98827473 98827676 -85460986 - MIR SINE MIR -10 252 29 489 304 178 5 chr4 98827867 98828081 -85460581 - MIR SINE MIR -10 252 2 26 0 0 0 chr4 98828570 98828596 -85460066 + AT_rich Low_complexity Low_complexity 1 26 0 242 261 261 0 chr4 98828596 98828711 -85459951 - MIR SINE MIR -1 261 117 206 328 109 35 chr4 98828827 98829056 -85459606 - L2 LINE L2 -937 2377 2132 1044 269 34 77 chr4 98829466 98829989 -85458673 + L2 LINE L2 2650 3140 -173 534 249 35 0 chr4 98829989 98830158 -85458504 - MER104 DNA MER2_type -3 177 3 1044 269 34 77 chr4 98830158 98830322 -85458340 + L2 LINE L2 3140 3309 -4 497 160 64 0 chr4 98830542 98830636 -85458026 - MLT1F1 LTR MaLR -3 564 465 686 294 20 40 chr4 98830641 98830893 -85457769 - MLT1E LTR MaLR -346 247 1 292 382 0 6 chr4 98833148 98833305 -85455357 + T-rich Low_complexity Low_complexity 3 158 0 571 286 156 3 chr4 98833350 98833633 -85455029 + MER46C DNA MER2_type 12 337 -1 6713 119 51 28 chr4 98833669 98834871 -85453791 - Tigger3b DNA MER2_type -2 1229 1 646 239 0 0 chr4 98835052 98835207 -85453455 + L1MA10 LINE L1 6167 6321 -13 351 357 52 26 chr4 98835555 98835827 -85452835 - L1MC/D LINE L1 -2150 5658 5380 24 32 0 0 chr4 98836149 98836180 -85452482 + AT_rich Low_complexity Low_complexity 1 31 0 2454 172 38 0 chr4 98836308 98836751 -85451911 + LOR1b LTR ERV1 2 461 0 21 36 0 0 chr4 98836968 98836996 -85451666 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr4 98837008 98837052 -85451610 + AT_rich Low_complexity Low_complexity 1 44 0 32 26 0 0 chr4 98837112 98837151 -85451511 + AT_rich Low_complexity Low_complexity 1 39 0 1024 328 43 3 chr4 98837386 98837731 -85450931 - MLT1I LTR MaLR -9 400 42 2396 168 40 17 chr4 98837873 98838392 -85450270 + L1MB8 LINE L1 5643 6173 -5 728 282 36 20 chr4 98838572 98838867 -85449795 + L1ME LINE L1 5349 5642 -528 233 330 62 6 chr4 98838971 98839146 -85449516 - L1M4 LINE L1 -3323 2823 2635 1901 157 3 3 chr4 98839224 98839517 -85449145 + AluSx SINE Alu 1 293 -19 2189 133 0 0 chr4 98839568 98839876 -85448786 - AluSx SINE Alu -4 308 1 371 134 31 55 chr4 98840142 98840269 -85448393 + (TA)n Simple_repeat Simple_repeat 2 125 0 235 336 9 0 chr4 98840372 98840479 -85448183 - L1M4 LINE L1 -3905 2241 2134 22 0 0 0 chr4 98840631 98840653 -85448009 + AT_rich Low_complexity Low_complexity 1 22 0 668 282 97 15 chr4 98840735 98840941 -85447721 + LTR16A LTR ERVL 228 450 0 1458 127 122 28 chr4 98841052 98841339 -85447323 - L1PA16 LINE L1 0 6166 5852 211 250 133 0 chr4 98843118 98843178 -85445484 - L2 LINE L2 -5 3267 3200 207 273 0 0 chr4 98843201 98843256 -85445406 + (TATATG)n Simple_repeat Simple_repeat 4 58 0 517 279 60 16 chr4 98844033 98844216 -85444446 - L1ME2 LINE L1 -276 5888 5698 5207 213 67 25 chr4 98844218 98845040 -85443622 + L1 LINE L1 1134 1920 -4869 2372 103 3 0 chr4 98845040 98845352 -85443310 + AluSp SINE Alu 1 313 0 5207 213 67 25 chr4 98845352 98846131 -85442531 + L1 LINE L1 1920 2795 -3994 1167 212 24 24 chr4 98846198 98846448 -85442214 + AluJo SINE Alu 33 282 -30 3175 221 45 7 chr4 98846481 98847309 -85441353 + L1 LINE L1 2788 3646 -3142 4027 179 6 18 chr4 98847337 98848177 -85440485 + L1 LINE L1 5143 5972 -816 1633 178 25 0 chr4 98848178 98848459 -85440203 - MSTB2 LTR MaLR 0 457 170 497 19 93 0 chr4 98848577 98848684 -85439978 + (TA)n Simple_repeat Simple_repeat 1 117 0 422 285 95 40 chr4 98848718 98848971 -85439691 + LTR16C LTR ERVL 215 481 -10 821 226 6 6 chr4 98849512 98849680 -85438982 - MER63A DNA MER1_type -4 206 39 219 392 91 7 chr4 98849808 98849951 -85438711 - MIR3 SINE MIR -21 187 33 2189 189 116 0 chr4 98851221 98851686 -85436976 - MLT2B1 LTR ERVL -1 519 1 565 325 4 44 chr4 98852743 98852992 -85435670 + MIR SINE MIR 4 242 -20 264 295 156 8 chr4 98853015 98853137 -85435525 + MIR3 SINE MIR 12 151 -57 502 212 78 134 chr4 98853191 98853221 -85435441 - MIR SINE MIR -1 261 231 1827 116 105 14 chr4 98853221 98853506 -85435156 + AluSx SINE Alu 2 312 0 502 212 78 134 chr4 98853506 98853692 -85434970 - MIR SINE MIR -31 231 57 6481 141 52 12 chr4 98853766 98854928 -85433734 + Tigger3b DNA MER2_type 1 1208 -23 1765 138 72 47 chr4 98854943 98854985 -85433677 - THE1C LTR MaLR 0 375 336 2306 107 0 0 chr4 98854985 98855293 -85433369 + AluSx SINE Alu 1 308 -4 1765 138 72 47 chr4 98855293 98855612 -85433050 - THE1C LTR MaLR -39 336 5 27 29 0 0 chr4 98855764 98855798 -85432864 + AT_rich Low_complexity Low_complexity 1 34 0 202 318 0 15 chr4 98855800 98855866 -85432796 + MIR3 SINE MIR 138 202 -6 198 0 0 0 chr4 98857583 98857605 -85431057 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 273 167 21 0 chr4 98857905 98857953 -85430709 - L2 LINE L2 0 3313 3265 2348 83 0 3 chr4 98858093 98858395 -85430267 + AluY SINE Alu 1 301 -10 22 0 0 0 chr4 98858479 98858501 -85430161 + AT_rich Low_complexity Low_complexity 1 22 0 419 167 146 0 chr4 98858998 98859094 -85429568 + LOR1a LTR ERV1 1 110 -387 504 131 0 4 chr4 98859094 98859253 -85429409 + AluSg/x SINE Alu 75 291 -19 2054 126 56 36 chr4 98859285 98859642 -85429020 + THE1B LTR MaLR 1 364 0 10646 122 17 1 chr4 98859642 98861198 -85427464 + THE1B-int LTR MaLR 1 1580 0 1996 143 44 41 chr4 98861198 98861561 -85427101 + THE1B LTR MaLR 1 364 0 514 95 274 0 chr4 98861577 98861672 -85426990 + LOR1-int LTR ERV1 443 563 -7557 968 110 0 0 chr4 98861681 98861808 -85426854 - AluY SINE Alu -184 127 1 21040 110 48 26 chr4 98861810 98865378 -85423284 + LOR1-int LTR ERV1 569 4219 -3901 2055 117 3 3 chr4 98865378 98865660 -85423002 + AluSx SINE Alu 1 282 -30 21040 110 48 26 chr4 98865660 98865725 -85422937 + LOR1-int LTR ERV1 4219 4281 -3839 6008 110 18 38 chr4 98865732 98866349 -85422313 + LOR1-int LTR ERV1 4507 5135 -2985 1738 168 18 0 chr4 98866349 98866634 -85422028 + AluSx SINE Alu 1 290 -22 6008 110 18 38 chr4 98866634 98866984 -85421678 + LOR1-int LTR ERV1 5135 5454 -2666 2478 79 0 0 chr4 98866984 98867288 -85421374 + AluY SINE Alu 1 304 -7 6008 110 18 38 chr4 98867288 98867341 -85421321 + LOR1-int LTR ERV1 5454 5507 -2613 3402 77 7 5 chr4 98867341 98867784 -85420878 - MLT2A1 LTR ERVL 0 444 1 33902 81 11 6 chr4 98867784 98868211 -85420451 - HERVL-A1 LTR ERVL 0 5654 5231 183 42 0 0 chr4 98868211 98868235 -85420427 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 33902 81 11 6 chr4 98868235 98869625 -85419037 - HERVL-A1 LTR ERVL -423 5231 3850 2303 79 0 48 chr4 98869625 98869941 -85418721 - AluY SINE Alu -10 301 1 33902 81 11 6 chr4 98869941 98872577 -85416085 - HERVL-A1 LTR ERVL -1804 3850 1176 1959 61 0 12 chr4 98872578 98872823 -85415839 + AluY SINE Alu 65 306 -5 21 0 0 0 chr4 98873166 98873187 -85415475 + AT_rich Low_complexity Low_complexity 1 21 0 246 220 0 0 chr4 98873802 98873861 -85414801 + (TG)n Simple_repeat Simple_repeat 2 60 0 21 36 0 0 chr4 98874435 98874463 -85414199 + AT_rich Low_complexity Low_complexity 1 28 0 2644 202 41 76 chr4 98874495 98874857 -85413805 - MER31-int LTR ERV1 -877 5285 4912 2321 92 0 0 chr4 98874857 98875152 -85413510 - AluSc SINE Alu -11 298 4 2644 202 41 76 chr4 98875152 98875573 -85413089 - MER31-int LTR ERV1 -1250 4912 3324 1299 213 91 5 chr4 98875568 98875943 -85412719 - MER31-int LTR ERV1 -1803 3133 2727 * 26 50 0 0 chr4 98876440 98876480 -85412182 + AT_rich Low_complexity Low_complexity 1 40 0 316 291 36 18 chr4 98876618 98876728 -85411934 - MER110 LTR ERV1 0 491 380 707 243 88 49 chr4 98877101 98877406 -85411256 + MER110 LTR ERV1 166 482 -9 * 860 214 125 30 chr4 98877405 98877700 -85410962 - MER110 LTR ERV1 -110 381 59 773 223 116 35 chr4 98877763 98878081 -85410581 - LTR37B LTR ERV1 -114 354 11 341 376 174 3 chr4 98878987 98879349 -85409313 - L2 LINE L2 -663 2651 2228 5335 209 28 18 chr4 98879885 98881155 -85407507 - L1PB2 LINE L1 -883 5263 3982 * 5936 115 6 1 chr4 98881153 98882023 -85406639 + L1PB2 LINE L1 5278 6151 0 708 130 20 0 chr4 98883019 98883119 -85405543 - AluJ SINE Alu -21 291 190 5703 65 3 27 chr4 98883119 98883824 -85404838 - LTR12 LTR ERV1 0 688 1 4760 74 30 0 chr4 98883824 98884449 -85404213 - HERV9 LTR ERV1 0 8399 7756 1958 155 68 35 chr4 98884443 98885179 -85403483 - HERV17 LTR ERV1 -5176 1720 735 * 29310 89 10 12 chr4 98885182 98889982 -85398680 - HERV17 LTR ERV1 -3457 4942 58 5515 89 3 26 chr4 98890006 98890710 -85397952 - LTR12 LTR ERV1 0 688 1 922 201 35 0 chr4 98890710 98890884 -85397778 - AluJ SINE Alu -119 193 14 182 337 76 43 chr4 98891355 98891447 -85397215 + MIR SINE MIR 21 115 -147 2142 114 0 19 chr4 98892223 98892531 -85396131 - AluSc SINE Alu -7 302 1 239 276 5 0 chr4 98892898 98892964 -85395698 - MIR SINE MIR -51 157 89 351 312 91 35 chr4 98894014 98894213 -85394449 + MIR SINE MIR 52 261 -1 418 272 29 22 chr4 98894680 98894816 -85393846 - MIR3 SINE MIR -46 162 26 31 26 0 0 chr4 98897547 98897585 -85391077 + AT_rich Low_complexity Low_complexity 1 38 0 342 266 110 19 chr4 98897753 98897907 -85390755 + MIR SINE MIR 78 245 -17 443 302 12 65 chr4 98898246 98898414 -85390248 - L2 LINE L2 0 3313 3160 1632 164 7 14 chr4 98898414 98898700 -85389962 + AluJb SINE Alu 1 284 -28 443 302 12 65 chr4 98898700 98898776 -85389886 - L2 LINE L2 -153 3160 3082 * 524 296 83 67 chr4 98898753 98899006 -85389656 - L2 LINE L2 -440 2874 2618 365 0 22 0 chr4 98899614 98899659 -85389003 + (TG)n Simple_repeat Simple_repeat 1 46 0 647 57 11 0 chr4 98899927 98899952 -85388710 + (GGAA)n Simple_repeat Simple_repeat 1 114 0 647 57 11 0 chr4 98899952 98900040 -85388622 + (GGAA)n Simple_repeat Simple_repeat 3 91 0 208 235 0 25 chr4 98901411 98901492 -85387170 + GA-rich Low_complexity Low_complexity 3 81 0 21 0 0 0 chr4 98902085 98902106 -85386556 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr4 98903778 98903803 -85384859 + (T)n Simple_repeat Simple_repeat 1 25 0 1243 113 0 0 chr4 98903821 98903981 -85384681 - AluSc SINE Alu -149 160 1 2300 100 7 7 chr4 98904724 98905033 -85383629 + AluSc SINE Alu 1 309 0 335 250 108 0 chr4 98905250 98905370 -85383292 - MIR SINE MIR -10 252 120 222 195 0 0 chr4 98905973 98906014 -85382648 + (TG)n Simple_repeat Simple_repeat 2 42 0 1975 137 7 0 chr4 98906052 98906345 -85382317 + AluSq SINE Alu 1 295 -18 2219 78 4 4 chr4 98906345 98906671 -85381991 + AluY SINE Alu 1 326 0 1501 243 130 44 chr4 98907406 98907905 -85380757 - MLT1F LTR MaLR 0 542 1 1753 143 50 7 chr4 98908595 98908874 -85379788 - AluSx SINE Alu -21 291 1 2259 93 0 10 chr4 98909150 98909450 -85379212 + AluY SINE Alu 1 297 -14 1754 169 3 10 chr4 98909971 98910266 -85378396 - AluJo SINE Alu -19 293 1 180 271 149 9 chr4 98910859 98910966 -85377696 - MIR SINE MIR -59 203 82 302 322 249 0 chr4 98911594 98911799 -85376863 + L2 LINE L2 2709 2964 -350 327 73 0 0 chr4 98912161 98912202 -85376460 + Alu SINE Alu 1 41 -267 7188 116 18 6 chr4 99012797 99014353 -85274309 + L1MA1 LINE L1 4724 6302 0 913 153 27 131 chr4 99014467 99014689 -85273973 - MER70B LTR ERVL 0 472 274 1456 226 61 40 chr4 99014794 99015204 -85273458 + L1M1 LINE L1 2375 2801 -4764 5283 55 20 6 chr4 99015204 99015911 -85272751 + L1PA7 LINE L1 5447 6163 0 1456 226 61 40 chr4 99015911 99015970 -85272692 + L1M1 LINE L1 2801 2857 -4708 7400 184 69 10 chr4 99015989 99017894 -85270768 + L1M1 LINE L1 3220 5242 -2323 186 189 0 0 chr4 99018571 99018608 -85270054 + (TG)n Simple_repeat Simple_repeat 2 38 0 271 290 122 28 chr4 99018886 99018993 -85269669 + L2 LINE L2 3193 3309 -4 23 33 0 0 chr4 99019201 99019231 -85269431 + AT_rich Low_complexity Low_complexity 1 30 0 2437 108 0 3 chr4 99020487 99020839 -85267823 - L1PB1 LINE L1 0 6151 5801 25 51 0 0 chr4 99020941 99020980 -85267682 + AT_rich Low_complexity Low_complexity 1 39 0 1219 336 17 23 chr4 99021060 99021664 -85266998 + L1M3a LINE L1 2 782 -5173 948 239 83 14 chr4 99022375 99022664 -85265998 + L1M1 LINE L1 2019 2327 -5238 390 251 207 39 chr4 99023297 99023476 -85265186 + MIR SINE MIR 41 249 -13 238 356 52 17 chr4 99023594 99023709 -85264953 + L3 LINE CR1 1390 1508 -69 235 333 147 0 chr4 99023750 99023852 -85264810 - L2 LINE L2 -22 3291 3175 * 1208 264 123 18 chr4 99023847 99024334 -85264328 + L2 LINE L2 2506 3048 -265 864 159 0 0 chr4 99024905 99025037 -85263625 + FLAM_C SINE Alu 1 132 -1 295 254 210 14 chr4 99026842 99026980 -85261682 - L1MC/D LINE L1 -2002 5806 5642 720 234 79 11 chr4 99027429 99027878 -85260784 - L1ME3 LINE L1 -8 6154 5539 345 262 121 82 chr4 99028297 99028579 -85260083 - L1MC/D LINE L1 -1985 5823 5531 2164 116 13 3 chr4 99028911 99029214 -85259448 + AluSc SINE Alu 1 306 -3 433 281 78 51 chr4 99029736 99030071 -85258591 - L1MC4a LINE L1 -1897 5911 5568 2197 81 0 0 chr4 99030096 99030419 -85258243 - AluY SINE Alu 0 323 1 505 337 135 41 chr4 99032463 99033242 -85255420 - L2 LINE L2 -23 3249 2364 22 70 0 0 chr4 99033276 99033319 -85255343 + AT_rich Low_complexity Low_complexity 1 43 0 319 75 0 0 chr4 99033861 99033901 -85254761 - Alu SINE Alu -255 44 5 444 297 51 51 chr4 99034466 99034661 -85254001 + L2 LINE L2 3119 3313 0 1303 224 135 24 chr4 99035468 99035884 -85252778 + MLT1C LTR MaLR 6 467 0 1930 159 0 9 chr4 99036211 99036526 -85252136 + AluJo SINE Alu 1 312 0 442 274 47 0 chr4 99036781 99036887 -85251775 + L2 LINE L2 3162 3272 0 936 240 124 0 chr4 99037998 99038215 -85250447 - MIR SINE MIR 0 262 19 24 0 0 0 chr4 99039419 99039443 -85249219 + AT_rich Low_complexity Low_complexity 1 24 0 1876 150 0 10 chr4 99039996 99040290 -85248372 - AluJb SINE Alu -14 298 8 4804 181 29 15 chr4 99040605 99042441 -85246221 + L1MB2 LINE L1 4313 6171 0 24 32 0 0 chr4 99044506 99044537 -85244125 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr4 99046294 99046318 -85242344 + AT_rich Low_complexity Low_complexity 1 24 0 250 256 45 30 chr4 99046521 99046654 -85242008 + L1M LINE L1 5284 5418 -2390 21 0 0 0 chr4 99046703 99046724 -85241938 + AT_rich Low_complexity Low_complexity 1 21 0 288 270 30 20 chr4 99047041 99047141 -85241521 + MER113 DNA MER1_type? 377 477 -44 1670 141 53 3 chr4 99047259 99047543 -85241119 - AluJb SINE Alu -14 298 1 363 254 36 27 chr4 99047631 99047741 -85240921 + MIR SINE MIR 127 237 -25 246 62 0 0 chr4 99048293 99048325 -85240337 + (A)n Simple_repeat Simple_repeat 1 32 0 869 154 151 109 chr4 99049175 99049486 -85239176 - MER33 DNA MER1_type 0 324 1 302 186 0 68 chr4 99049605 99049664 -85238998 - 5S rRNA rRNA -65 56 2 21 0 0 0 chr4 99049969 99049990 -85238672 + AT_rich Low_complexity Low_complexity 1 21 0 188 270 99 63 chr4 99050004 99050115 -85238547 + L2 LINE L2 452 566 -2748 780 147 0 8 chr4 99050386 99050515 -85238147 + FLAM_C SINE Alu 1 128 -5 234 91 0 0 chr4 99050564 99050597 -85238065 + (A)n Simple_repeat Simple_repeat 1 33 0 276 265 88 29 chr4 99050852 99050954 -85237708 - MIR3 SINE MIR -13 195 88 334 329 0 0 chr4 99050990 99051066 -85237596 - MIR SINE MIR -180 82 7 4739 179 55 39 chr4 99052104 99054469 -85234193 + L1MA8 LINE L1 3821 6290 -1 1152 106 24 12 chr4 99056394 99056564 -85232098 - AluSq SINE Alu -23 290 119 237 299 51 70 chr4 99057128 99057342 -85231320 + L2 LINE L2 1239 1448 -1866 783 289 164 43 chr4 99057438 99058115 -85230547 + L2 LINE L2 1836 2594 -720 615 280 63 34 chr4 99058418 99058657 -85230005 - MIR SINE MIR -2 260 15 223 395 12 12 chr4 99058952 99059038 -85229624 + MER5A DNA MER1_type 83 168 -21 235 221 29 29 chr4 99060843 99060911 -85227751 - MER113 DNA MER1_type? -47 474 407 1735 80 4 0 chr4 99060937 99061162 -85227500 - AluSp SINE Alu -4 309 84 871 216 60 40 chr4 99061166 99061467 -85227195 - MER113 DNA MER1_type? -209 312 6 770 263 82 45 chr4 99062582 99062962 -85225700 - L1MC4a LINE L1 -1741 6067 5674 290 225 70 93 chr4 99062968 99063097 -85225565 - MLT1H LTR MaLR 0 549 424 511 295 56 63 chr4 99063496 99063877 -85224785 - L1MC4a LINE L1 -1302 4844 4467 2195 123 0 0 chr4 99063877 99064179 -85224483 + AluSx SINE Alu 1 302 -10 511 295 56 63 chr4 99064179 99064401 -85224261 - L1MC4a LINE L1 -1679 4467 4245 626 300 110 54 chr4 99065401 99065964 -85222698 - L2 LINE L2 -2 3311 2720 1256 49 6 0 chr4 99065968 99066130 -85222532 - L1PA5 LINE L1 -4540 1606 1444 * 30447 38 3 2 chr4 99066129 99070662 -85218000 + L1PA5 LINE L1 1614 6152 -2 360 304 0 7 chr4 99070731 99070869 -85217793 - L2 LINE L2 -614 2700 2564 184 354 24 37 chr4 99070897 99070979 -85217683 + L2 LINE L2 3186 3266 -6 352 306 234 35 chr4 99071342 99071714 -85216948 - L2 LINE L2 -657 2657 2212 26 0 0 0 chr4 99071770 99071796 -85216866 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr4 99072231 99072266 -85216396 + AT_rich Low_complexity Low_complexity 1 35 0 225 0 0 0 chr4 99075112 99075137 -85213525 + (CAA)n Simple_repeat Simple_repeat 2 26 0 191 253 51 114 chr4 99076398 99076556 -85212106 + L2 LINE L2 3090 3237 -76 202 286 26 0 chr4 99076824 99076901 -85211761 - MIR3 SINE MIR -16 192 114 2087 108 0 10 chr4 99077746 99078053 -85210609 - AluSx SINE Alu -8 304 1 1351 144 18 126 chr4 99078151 99078492 -85210170 - AluJo SINE Alu -8 304 1 205 289 0 0 chr4 99078981 99079033 -85209629 - MIR SINE MIR -11 251 200 572 254 34 140 chr4 99079062 99079230 -85209432 - L2 LINE L2 -5 3308 3124 405 0 0 0 chr4 99079230 99079275 -85209387 + (CA)n Simple_repeat Simple_repeat 2 46 0 572 254 34 140 chr4 99079275 99079752 -85208910 - L2 LINE L2 -189 3124 2722 529 292 150 11 chr4 99079784 99080051 -85208611 + L2 LINE L2 1390 1693 -1621 1570 266 96 42 chr4 99080052 99080978 -85207684 + L2 LINE L2 2312 3297 -16 2535 70 3 0 chr4 99081306 99081634 -85207028 + L1PB1 LINE L1 5777 6105 -46 205 214 35 48 chr4 99081634 99081680 -85206982 + (TAAA)n Simple_repeat Simple_repeat 2 47 -97 1773 128 3 53 chr4 99081680 99081796 -85206866 + L1PB4 LINE L1 5843 5963 -193 1826 135 55 19 chr4 99081796 99082158 -85206504 - THE1C LTR MaLR 0 375 1 1773 128 3 53 chr4 99082158 99082362 -85206300 + L1PB4 LINE L1 5963 6147 -9 205 214 35 48 chr4 99082362 99082460 -85206202 + (TAAA)n Simple_repeat Simple_repeat 47 144 0 1472 148 37 0 chr4 99082955 99083199 -85205463 - L1PA16 LINE L1 -53 6113 5861 416 318 47 14 chr4 99083365 99083513 -85205149 + MIR3 SINE MIR 46 198 -10 766 96 109 6 chr4 99083537 99083693 -85204969 + L1MA8 LINE L1 6118 6289 -2 352 186 72 10 chr4 99083815 99083912 -85204750 + MLT1J1 LTR MaLR 1 103 -343 220 301 60 60 chr4 99083969 99084268 -85204394 + L2 LINE L2 1320 1618 -1696 617 273 59 70 chr4 99084543 99084619 -85204043 - L1ME LINE L1 -302 5819 5744 2233 123 0 0 chr4 99084619 99084928 -85203734 - AluSx SINE Alu -3 309 1 617 273 59 70 chr4 99084928 99085324 -85203338 - L1ME LINE L1 -377 5744 5352 22 0 0 0 chr4 99085689 99085711 -85202951 + AT_rich Low_complexity Low_complexity 1 22 0 334 304 154 0 chr4 99086073 99086227 -85202435 - MLT1H1 LTR MaLR -292 263 91 359 276 86 26 chr4 99086269 99086421 -85202241 + MLT1H1 LTR MaLR 331 491 -64 2554 231 59 29 chr4 99086433 99087728 -85200934 - L1ME1 LINE L1 -50 6116 4782 234 207 0 0 chr4 99087729 99087788 -85200874 + MLT1H1 LTR MaLR 493 549 -6 831 247 21 30 chr4 99087806 99088041 -85200621 - LTR40a LTR ERVL 0 519 287 184 325 0 0 chr4 99088258 99088298 -85200364 + L2 LINE L2 3137 3176 -96 2028 128 7 20 chr4 99088784 99089089 -85199573 - AluSp SINE Alu -12 301 1 23 33 0 0 chr4 99089144 99089174 -85199488 + AT_rich Low_complexity Low_complexity 1 30 0 466 239 19 63 chr4 99089637 99089842 -85198820 + HAL1 LINE L1 2312 2507 0 287 353 48 16 chr4 99090869 99091056 -85197606 - L3 LINE CR1 -982 595 403 275 244 73 24 chr4 99091059 99091141 -85197521 - L2 LINE L2 -21 3292 3207 441 0 0 0 chr4 99091237 99091286 -85197376 + (CA)n Simple_repeat Simple_repeat 2 50 0 1055 170 0 5 chr4 99091995 99092183 -85196479 - MER70A LTR ERVL -285 187 1 696 270 28 69 chr4 99092289 99092863 -85195799 + L1MEd LINE L1 990 1630 -860 15154 211 24 29 chr4 99092989 99099581 -85189081 + L1PA13 LINE L1 1 6563 -1021 1714 188 76 28 chr4 99099598 99100034 -85188628 + LTR2B LTR ERV1 34 490 0 48563 66 22 24 chr4 99100034 99106943 -85181719 + Harlequin LTR ERV1 1 6896 0 1758 178 75 39 chr4 99106964 99107403 -85181259 + LTR2B LTR ERV1 34 488 -2 2297 110 24 1 chr4 99107405 99107888 -85180774 + L1PA13 LINE L1 6556 7046 -553 10200 98 11 3 chr4 99107988 99109465 -85179197 + THE1B-int LTR MaLR 92 1580 0 1999 147 72 20 chr4 99109465 99109811 -85178851 + THE1B LTR MaLR 1 364 0 2273 138 3 8 chr4 99109925 99110308 -85178354 + L1PA13 LINE L1 7219 7599 -2 223 250 0 0 chr4 99111093 99111137 -85177525 + (TG)n Simple_repeat Simple_repeat 1 44 0 279 289 10 0 chr4 99111436 99111533 -85177129 + L1MEd LINE L1 2415 2512 -3617 253 271 14 0 chr4 99111736 99111806 -85176856 + (CTA)n Simple_repeat Simple_repeat 1 71 0 590 169 8 8 chr4 99111968 99112092 -85176570 + L1MA8 LINE L1 6168 6291 0 3254 160 92 46 chr4 99112217 99112604 -85176058 + L1MD2 LINE L1 5513 5881 -478 2140 109 3 3 chr4 99112604 99112898 -85175764 + AluSg SINE Alu 1 294 -16 3254 160 92 46 chr4 99112898 99113107 -85175555 + L1MD2 LINE L1 5881 6079 -280 327 49 0 0 chr4 99113107 99113148 -85175514 + (CA)n Simple_repeat Simple_repeat 1 41 0 3254 160 92 46 chr4 99113148 99113348 -85175314 + L1MD2 LINE L1 6079 6346 -13 252 0 0 0 chr4 99113585 99113613 -85175049 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 39258 64 3 2 chr4 99113631 99119779 -85168883 - L1PA5 LINE L1 -2 6152 1 2309 86 0 20 chr4 99120354 99120655 -85168007 - AluY SINE Alu -16 295 1 477 217 16 23 chr4 99120790 99120919 -85167743 + L1ME3A LINE L1 5642 5769 -401 233 289 103 32 chr4 99120956 99121112 -85167550 + L2 LINE L2 3065 3231 -82 278 341 16 32 chr4 99121270 99121396 -85167266 - MER45C DNA AcHobo -511 442 319 1150 261 27 21 chr4 99121450 99121779 -85166883 - MER45C DNA AcHobo -622 331 1 207 209 0 0 chr4 99121784 99121827 -85166835 + A-rich Low_complexity Low_complexity 3 45 0 796 238 93 14 chr4 99121867 99122157 -85166505 + L1ME3A LINE L1 5808 6120 -50 1630 221 6 0 chr4 99122448 99122774 -85165888 - MER58B DNA MER1_type -13 328 1 335 283 91 61 chr4 99123901 99124131 -85164531 - MER20B DNA MER1_type -546 237 1 2519 105 3 3 chr4 99124434 99124796 -85163866 - L1PB3 LINE L1 -7 6147 5786 210 143 0 0 chr4 99124799 99124834 -85163828 + (TATATG)n Simple_repeat Simple_repeat 5 39 0 242 215 22 30 chr4 99124897 99125032 -85163630 + (TA)n Simple_repeat Simple_repeat 2 135 0 562 130 70 0 chr4 99125072 99125172 -85163490 - L1PB3 LINE L1 -373 5781 5675 650 229 40 15 chr4 99125186 99125387 -85163275 - LTR37B LTR ERV1 -59 409 204 40348 38 22 1 chr4 99125822 99131848 -85156814 - L1PA2 LINE L1 0 6155 2 866 66 8 0 chr4 99131848 99131969 -85156693 - L1P5 LINE L1 -466 5688 5567 240 203 72 0 chr4 99132013 99132082 -85156580 + L1MC5 LINE L1 7696 7769 -192 788 30 10 0 chr4 99132892 99132991 -85155671 + (TTTC)n Simple_repeat Simple_repeat 4 103 0 249 242 48 0 chr4 99133864 99133926 -85154736 + MIR SINE MIR 125 189 -73 213 376 165 16 chr4 99133971 99134293 -85154369 + L2 LINE L2 2273 2642 -672 566 302 69 43 chr4 99134538 99135120 -85153542 - L1M4 LINE L1 -2201 3945 3349 2250 114 0 0 chr4 99135474 99135780 -85152882 - AluY SINE Alu -5 306 1 10939 184 43 14 chr4 99135888 99139421 -85149241 - L1P5 LINE L1 -610 6257 2267 2132 106 3 0 chr4 99139421 99139738 -85148924 + AluSx SINE Alu 1 318 0 10939 184 43 14 chr4 99139738 99141420 -85147242 - L1P5 LINE L1 -4600 2267 635 1035 179 15 0 chr4 99141421 99141617 -85147045 - L1P5 LINE L1 -6663 200 2 423 178 55 0 chr4 99141778 99141851 -85146811 + MER20 DNA MER1_type 143 219 0 27 0 0 0 chr4 99141943 99141970 -85146692 + AT_rich Low_complexity Low_complexity 1 27 0 1393 147 155 12 chr4 99141970 99142221 -85146441 - AluSg1 SINE Alu -20 289 3 23 33 0 0 chr4 99142233 99142263 -85146399 + AT_rich Low_complexity Low_complexity 1 30 0 1735 197 67 94 chr4 99142355 99142889 -85145773 - MLT2B1 LTR ERVL 0 520 1 27591 194 31 22 chr4 99142891 99143026 -85145636 - ERVL LTR ERVL -9 5755 5623 1947 187 11 6 chr4 99143026 99143389 -85145273 - MLT1A1 LTR MaLR 0 365 1 27591 194 31 22 chr4 99143389 99145876 -85142786 - ERVL LTR ERVL -141 5623 3158 7289 36 8 0 chr4 99145876 99147368 -85141294 + L1PA4 LINE L1 4710 6208 0 27591 194 31 22 chr4 99147368 99148277 -85140385 - ERVL LTR ERVL -2606 3158 2258 1826 151 28 3 chr4 99148277 99148562 -85140100 - AluSx SINE Alu -20 292 1 27591 194 31 22 chr4 99148562 99149432 -85139230 - ERVL LTR ERVL -3506 2258 1397 2381 95 0 0 chr4 99149432 99149736 -85138926 - AluY SINE Alu -7 304 1 27591 194 31 22 chr4 99149736 99150762 -85137900 - ERVL LTR ERVL -4367 1397 279 415 182 0 0 chr4 99150785 99150862 -85137800 - AluJo SINE Alu -4 308 232 819 193 14 0 chr4 99150864 99151004 -85137658 - AluJo SINE Alu -170 142 1 536 199 271 17 chr4 99151004 99151209 -85137453 - ERVL LTR ERVL -5419 252 4 268 228 0 0 chr4 99151209 99151260 -85137402 - Ricksha DNA DNA -2340 906 856 2593 60 0 6 chr4 99151407 99151740 -85136922 - L1PA5 LINE L1 0 6154 5824 2612 54 6 0 chr4 99151740 99152073 -85136589 + L1P LINE L1 4704 5038 -1108 * 9072 52 3 0 chr4 99152072 99153233 -85135429 + L1P LINE L1 2007 3171 -2975 21 0 0 0 chr4 99153427 99153448 -85135214 + AT_rich Low_complexity Low_complexity 1 21 0 377 265 10 0 chr4 99153448 99153546 -85135116 + L1MDa LINE L1 15 113 -6427 591 207 9 0 chr4 99153546 99153657 -85135005 + AluJb SINE Alu 179 290 -22 5004 226 79 25 chr4 99153779 99156501 -85132161 + L1MDa LINE L1 1743 4617 -1923 369 225 81 19 chr4 99156531 99156691 -85131971 + L1MB1 LINE L1 5197 5366 -780 1095 214 0 10 chr4 99156726 99156927 -85131735 + Tigger7 DNA MER2_type 66 264 -2223 502 188 0 40 chr4 99156929 99157030 -85131632 + Tigger7 DNA MER2_type 2390 2486 -1 3054 166 22 73 chr4 99157066 99157754 -85130908 + L1MB1 LINE L1 5479 6131 -37 2169 117 52 26 chr4 99157755 99158098 -85130564 + THE1B LTR MaLR 1 352 -12 1154 65 7 0 chr4 99158105 99158258 -85130404 + THE1B-int LTR MaLR 1 154 -1426 10705 118 10 0 chr4 99158258 99159774 -85128888 + THE1B-int LTR MaLR 50 1580 0 2160 113 54 25 chr4 99159774 99160128 -85128534 + THE1B LTR MaLR 1 364 0 368 304 18 0 chr4 99160662 99160774 -85127888 + L3 LINE CR1 1318 1431 -146 1981 143 10 7 chr4 99160839 99161146 -85127516 + AluSg SINE Alu 1 308 -2 1664 252 42 59 chr4 99161292 99161753 -85126909 - L2 LINE L2 0 3313 2874 938 158 20 0 chr4 99161753 99161949 -85126713 + L1MA7 LINE L1 6091 6290 -1 1664 252 42 59 chr4 99161949 99162392 -85126270 - L2 LINE L2 -439 2874 2425 667 268 28 75 chr4 99163971 99164225 -85124437 + MIR SINE MIR 2 243 -19 208 326 137 0 chr4 99165083 99165178 -85123484 - L3 LINE CR1 -74 1503 1396 21 0 0 0 chr4 99166312 99166333 -85122329 + AT_rich Low_complexity Low_complexity 1 21 0 725 141 0 8 chr4 99166449 99166570 -85122092 - L1PB3 LINE L1 -9 6145 6026 30 45 0 0 chr4 99166659 99166703 -85121959 + AT_rich Low_complexity Low_complexity 1 44 0 494 289 113 39 chr4 99166807 99167091 -85121571 - MLT1L LTR MaLR 0 615 311 205 296 42 14 chr4 99168143 99168214 -85120448 + L2 LINE L2 3161 3233 -39 614 283 14 80 chr4 99168692 99168968 -85119694 - MIR SINE MIR -3 259 2 4091 42 1 2 chr4 99169290 99170162 -85118500 + L1P2 LINE L1 4879 5748 -406 5275 127 18 35 chr4 99170721 99171608 -85117054 - Tigger1 DNA MER2_type 0 2418 1547 497 296 87 66 chr4 99172372 99172707 -85115955 + LTR67 LTR ERVL 216 557 0 383 289 47 23 chr4 99172860 99172988 -85115674 - L2 LINE L2 -1 3271 3141 778 169 0 0 chr4 99173179 99173309 -85115353 + FLAM_C SINE Alu 13 142 -1 44 80 0 0 chr4 99174371 99174471 -85114191 + AT_rich Low_complexity Low_complexity 1 100 0 196 317 84 7 chr4 99174496 99174638 -85114024 - MIR SINE MIR -46 216 64 423 0 0 0 chr4 99176484 99176531 -85112131 + (T)n Simple_repeat Simple_repeat 1 47 0 39 0 0 0 chr4 99176556 99176595 -85112067 + GC_rich Low_complexity Low_complexity 1 39 0 9318 147 11 4 chr4 99176796 99177151 -85111511 - L1PA13 LINE L1 -19 6144 5793 2401 93 0 6 chr4 99177151 99177463 -85111199 - AluY SINE Alu -1 310 1 9318 147 11 4 chr4 99177463 99179456 -85109206 - L1PA13 LINE L1 -370 5793 3764 636 345 183 20 chr4 99179661 99179974 -85108688 - L3 LINE CR1 -818 759 498 2204 122 0 0 chr4 99179974 99180269 -85108393 + AluSx SINE Alu 1 295 -17 636 345 183 20 chr4 99180269 99180567 -85108095 - L3 LINE CR1 -1079 498 48 190 114 23 23 chr4 99180631 99180675 -85107987 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 2293 105 0 3 chr4 99181772 99182076 -85106586 + AluSc SINE Alu 1 303 -6 390 156 31 0 chr4 99182606 99182670 -85105992 + MLT1B LTR MaLR 1 66 -324 437 266 8 23 chr4 99182823 99182951 -85105711 - LTR16B LTR ERVL 0 464 339 3995 222 24 13 chr4 99182960 99184046 -85104616 - L1PA12 LINE L1 -2685 4899 3802 * 4110 257 156 28 chr4 99184040 99185775 -85102887 - L1PA12 LINE L1 -4285 3299 1788 1242 261 48 73 chr4 99185775 99186403 -85102259 - LTR9 LTR ERV1 0 612 1 4110 257 156 28 chr4 99186403 99187569 -85101093 - L1PA12 LINE L1 -5796 1788 7 225 0 0 0 chr4 99187628 99187653 -85101009 + (A)n Simple_repeat Simple_repeat 1 25 0 1689 295 49 30 chr4 99188757 99189750 -85098912 - L2 LINE L2 0 3313 2307 728 226 40 85 chr4 99189881 99190129 -85098533 - L2 LINE L2 -1382 1932 1696 4949 93 22 1 chr4 99190142 99191006 -85097656 + L1PA14 LINE L1 5108 5988 -173 572 190 9 4 chr4 99191110 99191240 -85097422 - L1M3 LINE L1 -583 5588 5461 344 227 0 15 chr4 99191240 99191306 -85097356 + AluS SINE Alu 2 66 -237 2167 116 10 3 chr4 99191532 99191833 -85096829 - AluSq SINE Alu -10 303 1 208 27 54 27 chr4 99191839 99191876 -85096786 + (TTTAA)n Simple_repeat Simple_repeat 3 40 0 5370 90 8 0 chr4 99191876 99192600 -85096062 - L1PA10 LINE L1 -19 6149 5420 487 164 0 0 chr4 99192600 99192673 -85095989 + AluJb SINE Alu 209 281 -31 1692 203 29 29 chr4 99192674 99193180 -85095482 - L1M4 LINE L1 -3853 3104 2593 1170 174 5 5 chr4 99193182 99193377 -85095285 - MLT1A1 LTR MaLR 0 365 171 335 288 194 0 chr4 99193379 99193482 -85095180 + MLT2B2 LTR ERVL 339 421 -133 234 0 0 0 chr4 99193482 99193508 -85095154 + (CAAT)n Simple_repeat Simple_repeat 4 29 0 335 288 194 0 chr4 99193508 99193543 -85095119 + MLT2B2 LTR ERVL 421 554 0 2689 244 33 25 chr4 99193558 99194581 -85094081 - L1M4 LINE L1 -4470 2489 1486 1211 228 13 78 chr4 99194603 99194989 -85093673 - MLT1A2 LTR MaLR -13 361 1 540 238 0 112 chr4 99194989 99195212 -85093450 - L1M3d LINE L1 -5018 873 676 183 162 0 0 chr4 99195556 99195593 -85093069 + CT-rich Low_complexity Low_complexity 2 38 0 555 306 144 36 chr4 99195853 99196186 -85092476 - L1M4 LINE L1 -5514 1364 996 352 284 24 31 chr4 99196205 99196332 -85092330 - MLT1J LTR MaLR -295 216 91 8348 134 19 6 chr4 99196724 99198037 -85090625 - Tigger1 DNA MER2_type -1059 1359 30 303 203 14 14 chr4 99199477 99199551 -85089111 - Charlie8 DNA MER1_type -2227 190 117 972 231 24 12 chr4 99199911 99200162 -85088500 - L1MB8 LINE L1 -73 6105 5852 335 256 83 24 chr4 99200153 99200321 -85088341 - L1M4 LINE L1 -6680 179 2 * 27 0 0 0 chr4 99201937 99201964 -85086698 + AT_rich Low_complexity Low_complexity 1 27 0 294 246 15 0 chr4 99202546 99202611 -85086051 - MER5A DNA MER1_type 0 189 124 1884 170 3 0 chr4 99203594 99203905 -85084757 + AluJb SINE Alu 1 312 0 223 338 26 13 chr4 99204960 99205037 -85083625 + MER5A DNA MER1_type 3 80 -109 461 308 157 20 chr4 99205378 99205576 -85083086 + MIR SINE MIR 38 262 0 5486 106 15 0 chr4 99206493 99207293 -85081369 - L1PA13 LINE L1 0 6163 5352 4101 273 68 25 chr4 99207761 99209473 -85079189 + L1ME1 LINE L1 37 1822 -4574 1485 244 51 89 chr4 99209472 99210144 -85078518 + L1ME1 LINE L1 5580 6225 -10 * 24 0 0 0 chr4 99210151 99210175 -85078487 + AT_rich Low_complexity Low_complexity 1 24 0 1444 153 27 147 chr4 99210555 99210744 -85077918 - MLT1B LTR MaLR 0 390 282 1940 141 3 7 chr4 99210744 99211206 -85077456 - AluSx SINE Alu 0 470 10 1444 153 27 147 chr4 99211206 99211458 -85077204 - MLT1B LTR MaLR -108 282 1 554 138 9 0 chr4 99211505 99211614 -85077048 + CT-rich Low_complexity Low_complexity 3 112 0 1714 271 70 145 chr4 99211646 99212692 -85075970 - L2 LINE L2 -33 3280 2285 236 309 88 17 chr4 99212692 99212873 -85075789 - LTR33A LTR ERVL -5 518 325 1714 271 70 145 chr4 99212873 99213790 -85074872 - L2 LINE L2 -1028 2285 1301 1535 239 81 55 chr4 99213822 99214478 -85074184 + MER97c DNA MER1_type? 13 685 -405 384 223 21 21 chr4 99214492 99214586 -85074076 + MER97b DNA MER1_type? 960 1053 0 477 215 32 0 chr4 99215140 99215233 -85073429 + MLT1A1 LTR MaLR 1 96 -269 3311 176 11 9 chr4 99216491 99217135 -85071527 + L1 LINE L1 4664 5308 -838 656 203 132 26 chr4 99217146 99217373 -85071289 + L1MC4a LINE L1 6162 6412 -1396 188 259 35 52 chr4 99218031 99218089 -85070573 - MER5B DNA MER1_type -4 174 118 1122 299 132 18 chr4 99218103 99218594 -85070068 - MLT1H1 LTR MaLR -8 547 1 510 229 46 9 chr4 99218595 99218704 -85069958 + MER5B DNA MER1_type 66 178 0 275 354 50 0 chr4 99219338 99219437 -85069225 - L2 LINE L2 -186 3086 2983 1290 279 77 20 chr4 99219438 99219882 -85068780 - MLT1J LTR MaLR -31 480 12 280 317 135 23 chr4 99220614 99220961 -85067701 - L1ME4a LINE L1 -82 6039 5654 401 335 93 42 chr4 99220999 99221235 -85067427 - L1ME4a LINE L1 -2244 5564 5317 4131 147 14 63 chr4 99221355 99221821 -85066841 - L1MA6 LINE L1 -92 6208 5800 293 0 27 0 chr4 99221821 99221858 -85066804 + (CA)n Simple_repeat Simple_repeat 1 38 0 4131 147 14 63 chr4 99221858 99222228 -85066434 - L1MA6 LINE L1 -500 5800 5413 2359 162 16 2 chr4 99222525 99222951 -85065711 + L1MA9 LINE L1 5856 6287 -25 645 242 114 5 chr4 99223478 99223697 -85064965 - LTR16A1 LTR ERVL -1 456 214 285 336 137 16 chr4 99223848 99224104 -85064558 + L2 LINE L2 3014 3300 -13 288 256 51 0 chr4 99224481 99224559 -85064103 - MLT1H LTR MaLR 0 549 468 250 328 50 34 chr4 99224792 99224911 -85063751 - L2 LINE L2 -203 3069 2949 646 281 50 15 chr4 99224918 99225117 -85063545 - MLT1J LTR MaLR -4 507 302 2196 164 61 15 chr4 99225210 99225619 -85063043 + MSTA LTR MaLR 1 428 0 434 329 84 27 chr4 99225912 99226137 -85062525 + L2 LINE L2 3074 3311 -2 33 25 0 0 chr4 99226637 99226677 -85061985 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr4 99226857 99226885 -85061777 + AT_rich Low_complexity Low_complexity 1 28 0 4329 154 38 1 chr4 99227153 99227943 -85060719 - L1MA4 LINE L1 -5 6295 5477 744 140 44 0 chr4 99227948 99228084 -85060578 - L1MA3 LINE L1 -1 6304 6163 854 128 20 149 chr4 99228084 99228445 -85060217 - L1MA4 LINE L1 -798 5348 5178 340 301 0 67 chr4 99228693 99228902 -85059760 - L1ME3A LINE L1 -7 6163 5969 572 271 44 8 chr4 99229385 99229730 -85058932 + L1ME LINE L1 679 1033 -5047 649 186 116 35 chr4 99229782 99229991 -85058671 + MLT1G1 LTR MaLR 244 549 -46 1937 288 61 21 chr4 99229994 99231436 -85057226 + L1ME LINE L1 1120 2598 -3482 1617 191 93 11 chr4 99231436 99231802 -85056860 - MSTD LTR MaLR 0 396 1 1937 288 61 21 chr4 99231802 99231888 -85056774 + L1ME LINE L1 2598 2679 -3401 976 193 42 0 chr4 99231888 99232080 -85056582 + MLT1D LTR MaLR 299 498 -7 1167 210 44 33 chr4 99232736 99233008 -85055654 - MLT1A1 LTR MaLR 0 365 91 523 234 32 13 chr4 99233157 99233315 -85055347 - L1MB8 LINE L1 0 6178 6018 1362 181 31 100 chr4 99233319 99233738 -85054924 - L1M4 LINE L1 -1267 4879 4490 1821 155 163 19 chr4 99233897 99234265 -85054397 + MSTA LTR MaLR 6 426 -2 8928 180 25 3 chr4 99234267 99235880 -85052782 + MSTA-int LTR MaLR 1 1649 -2 5945 160 7 16 chr4 99234880 99235882 -85052780 + MSTA-int LTR MaLR 588 1580 0 1899 104 197 25 chr4 99235882 99236247 -85052415 + MSTA LTR MaLR 1 428 0 682 226 10 108 chr4 99236469 99236783 -85051879 - TAR1 Satellite telomeric -1819 292 10 * 1211 211 64 32 chr4 99236597 99236939 -85051723 - LTR60 LTR ERV1 -6 580 228 1245 138 0 119 chr4 99236942 99237254 -85051408 - LTR60 LTR ERV1 -311 275 1 40 21 0 0 chr4 99237680 99237727 -85050935 + AT_rich Low_complexity Low_complexity 1 47 0 23 33 0 0 chr4 99237872 99237902 -85050760 + AT_rich Low_complexity Low_complexity 1 30 0 669 43 0 0 chr4 99237955 99238047 -85050615 - AluY SINE Alu 0 312 221 1199 57 0 13 chr4 99238741 99238900 -85049762 - L1PA8 LINE L1 0 6172 6016 735 185 45 13 chr4 99239136 99239293 -85049369 - L1M3e LINE L1 -6868 162 1 817 196 0 0 chr4 99239387 99239535 -85049127 + FRAM SINE Alu 26 173 -3 2880 171 95 6 chr4 99239700 99240245 -85048417 - LTR26E LTR ERV1 -27 595 2 277 195 104 26 chr4 99240504 99240581 -85048081 - HsTC2 DNA Tc2 -1 1897 1815 2167 177 13 98 chr4 99240602 99240640 -85048022 - MLT2B3 LTR ERVL -2 552 512 186 43 0 0 chr4 99240640 99240663 -85047999 + (TAGA)n Simple_repeat Simple_repeat 2 24 0 2167 177 13 98 chr4 99240663 99241156 -85047506 - MLT2B3 LTR ERVL -42 512 66 240 228 165 0 chr4 99241784 99241863 -85046799 - L2 LINE L2 -2 3311 3220 1487 272 74 38 chr4 99241895 99242336 -85046326 - L2 LINE L2 -287 3026 2552 4848 110 45 11 chr4 99242336 99243089 -85045573 + MER4E LTR ERV1 1 779 0 1487 272 74 38 chr4 99243089 99243307 -85045355 - L2 LINE L2 -761 2552 2343 2014 138 28 64 chr4 99243307 99243417 -85045245 + MLT2A2 LTR ERVL 1 113 -441 2260 118 0 0 chr4 99243417 99243730 -85044932 + AluSq SINE Alu 1 313 0 2014 138 28 64 chr4 99243730 99244178 -85044484 + MLT2A2 LTR ERVL 113 552 -2 22 0 0 0 chr4 99244838 99244860 -85043802 + AT_rich Low_complexity Low_complexity 1 22 0 2349 73 0 3 chr4 99245347 99245649 -85043013 - AluY SINE Alu -10 301 1 997 230 34 0 chr4 99245649 99245858 -85042804 - MER58A DNA MER1_type -8 216 1 186 318 45 0 chr4 99246079 99246145 -85042517 - L2 LINE L2 -1 3271 3203 686 169 8 0 chr4 99246315 99246433 -85042229 - L1PA16 LINE L1 -9 6157 6039 668 111 8 8 chr4 99246439 99246556 -85042106 + L1PB4 LINE L1 5284 5400 -766 3767 128 37 2 chr4 99246849 99247473 -85041189 + L1PB4 LINE L1 5389 6034 -122 * 14202 159 34 46 chr4 99247470 99249272 -85039390 + L1M1 LINE L1 1102 2925 -4640 2027 129 0 4 chr4 99249272 99249551 -85039111 + AluSx SINE Alu 3 280 -32 14202 159 34 46 chr4 99249551 99252430 -85036232 + L1M1 LINE L1 2925 5726 -1839 1679 141 34 4 chr4 99252430 99252510 -85036152 + AluSc SINE Alu 39 115 -194 297 0 0 0 chr4 99252510 99252543 -85036119 + (CA)n Simple_repeat Simple_repeat 2 34 0 1679 141 34 4 chr4 99252543 99252725 -85035937 + AluSc SINE Alu 115 309 0 14202 159 34 46 chr4 99252725 99252793 -85035869 + L1M1 LINE L1 5726 5793 -1772 401 0 20 0 chr4 99253558 99253607 -85035055 + (TTATA)n Simple_repeat Simple_repeat 4 53 0 294 216 40 56 chr4 99253656 99253781 -85034881 + L1ME3A LINE L1 5751 5873 -297 844 255 102 62 chr4 99254581 99255032 -85033630 - MLT1H LTR MaLR -9 540 1 185 425 85 0 chr4 99255246 99255352 -85033310 - L2 LINE L2 -40 3232 3118 476 251 5 103 chr4 99255737 99255932 -85032730 + L2 LINE L2 3132 3307 -6 718 108 58 0 chr4 99256229 99256349 -85032313 + MLT2B2 LTR ERVL 1 127 -388 2832 129 143 12 chr4 99256349 99256845 -85031817 + LTR59 LTR ERV1 30 590 -7 263 317 114 0 chr4 99257330 99257453 -85031209 - MIR SINE MIR -4 258 122 12994 95 6 64 chr4 99257685 99259847 -85028815 - L1P LINE L1 -1620 4526 2491 797 158 0 0 chr4 99259847 99259974 -85028688 + THE1B LTR MaLR 237 363 -1 3203 126 19 6 chr4 99259974 99260492 -85028170 + L1PA13 LINE L1 5637 6161 -2 254 184 0 0 chr4 99261279 99261328 -85027334 + MER4-int LTR ERV1 1111 1159 -5439 229 303 42 17 chr4 99261599 99261718 -85026944 + L1M4 LINE L1 2408 2529 -3617 267 257 14 0 chr4 99261921 99261991 -85026671 + (CTA)n Simple_repeat Simple_repeat 1 71 0 534 192 8 8 chr4 99262155 99262275 -85026387 + L1MA8 LINE L1 6169 6288 -3 3465 159 84 54 chr4 99262394 99262793 -85025869 + L1MD2 LINE L1 5505 5890 -469 2157 105 0 3 chr4 99262793 99263087 -85025575 + AluSg SINE Alu 4 296 -14 3465 159 84 54 chr4 99263087 99263296 -85025366 + L1MD2 LINE L1 5890 6091 -268 207 100 0 0 chr4 99263296 99263326 -85025336 + (CA)n Simple_repeat Simple_repeat 1 30 0 3465 159 84 54 chr4 99263326 99263533 -85025129 + L1MD2 LINE L1 6091 6346 -13 38 0 0 0 chr4 99263766 99263804 -85024858 + AT_rich Low_complexity Low_complexity 1 38 0 252 0 0 0 chr4 99263826 99263854 -85024808 + (TTA)n Simple_repeat Simple_repeat 3 30 0 34197 94 7 52 chr4 99263854 99270274 -85018388 - L1PA5 LINE L1 -18 6136 12 328 158 0 0 chr4 99270283 99270340 -85018322 - L1 LINE L1 -1774 4372 4316 1229 213 26 18 chr4 99270349 99270534 -85018128 - AluSc SINE Alu 0 309 120 243 0 0 0 chr4 99270534 99270561 -85018101 + (TG)n Simple_repeat Simple_repeat 1 27 0 1229 213 26 18 chr4 99270561 99270647 -85018015 - AluSc SINE Alu -189 120 36 265 217 12 24 chr4 99270663 99270746 -85017916 - L1 LINE L1 -1840 4306 4225 3901 26 2 0 chr4 99270852 99271314 -85017348 - L1P LINE L1 -1793 4353 3891 * 4350 131 3 1 chr4 99271313 99271962 -85016700 + L1P LINE L1 7 656 -5490 8642 121 10 19 chr4 99272062 99273408 -85015254 - L1P3 LINE L1 -4994 1467 134 233 256 244 0 chr4 99274013 99274091 -85014571 - MER5A DNA MER1_type -83 106 10 29 28 0 0 chr4 99274253 99274289 -85014373 + AT_rich Low_complexity Low_complexity 1 36 0 968 98 148 44 chr4 99274354 99274459 -85014203 + MER30 DNA MER1_type 1 94 -136 324 0 0 0 chr4 99274459 99274495 -85014167 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 968 98 148 44 chr4 99274495 99274572 -85014090 + MER30 DNA MER1_type 94 202 -28 753 112 48 37 chr4 99274654 99274842 -85013820 - L1MA5 LINE L1 -2 6298 6109 440 98 0 0 chr4 99275024 99275147 -85013515 + Alu SINE Alu 220 342 0 4295 181 26 66 chr4 99275147 99275454 -85013208 + Tigger6a DNA MER2_type 68 386 -1211 754 238 0 0 chr4 99275454 99275601 -85013061 + FRAM SINE Alu 2 148 -18 4295 181 26 66 chr4 99275601 99276351 -85012311 + Tigger6a DNA MER2_type 386 1083 0 315 0 0 0 chr4 99276786 99276821 -85011841 + (CA)n Simple_repeat Simple_repeat 2 36 0 2505 121 62 9 chr4 99276843 99277265 -85011397 - Tigger2 DNA MER2_type -2 2716 2273 429 138 15 0 chr4 99277255 99277320 -85011342 - Tigger2 DNA MER2_type -2649 69 4 * 499 191 46 20 chr4 99277660 99277812 -85010850 - L1M4 LINE L1 -3708 2438 2283 2119 162 58 112 chr4 99277880 99278504 -85010158 - LTR38B LTR ERV1 -20 590 1 325 341 67 0 chr4 99279056 99279220 -85009442 + L1ME LINE L1 5510 5684 -437 793 229 70 53 chr4 99279965 99280306 -85008356 - L1M4 LINE L1 -3513 2633 2287 1845 251 75 32 chr4 99280406 99280445 -85008217 - L1ME1 LINE L1 -19 6958 6922 3514 115 2 8 chr4 99280445 99280959 -85007703 - MER9 LTR ERVK 0 511 1 1845 251 75 32 chr4 99280959 99281571 -85007091 - L1ME1 LINE L1 -55 6922 6279 444 205 82 8 chr4 99281622 99281744 -85006918 - L1MA8 LINE L1 -4 6287 6157 946 215 103 84 chr4 99281774 99282296 -85006366 - L1ME1 LINE L1 -3378 3579 3048 * 1787 256 90 78 chr4 99282287 99282974 -85005688 - L1ME1 LINE L1 -4588 2371 1693 213 39 0 0 chr4 99282974 99283000 -85005662 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1787 256 90 78 chr4 99283000 99283119 -85005543 - L1ME1 LINE L1 -5266 1693 1577 15727 31 0 2 chr4 99283119 99285771 -85002891 - L1PA3 LINE L1 0 6155 3507 1787 256 90 78 chr4 99285771 99286681 -85001981 - L1ME1 LINE L1 -5382 1577 650 321 281 110 2 chr4 99286690 99286862 -85001800 - L1ME1 LINE L1 -6360 495 11 3354 265 47 24 chr4 99286866 99287499 -85001163 - L1M4 LINE L1 -848 5298 4681 1451 164 82 15 chr4 99287499 99287816 -85000846 - AluSx SINE Alu 0 335 1 3354 265 47 24 chr4 99287816 99288564 -85000098 - L1M4 LINE L1 -1465 4681 3883 292 61 45 30 chr4 99288651 99288717 -84999945 + CT-rich Low_complexity Low_complexity 1 67 0 1193 236 119 38 chr4 99288734 99289424 -84999238 - L1M4 LINE L1 -2512 3634 2889 742 259 37 23 chr4 99289426 99289858 -84998804 + MLT1E LTR MaLR 1 532 -61 632 236 6 38 chr4 99289862 99289895 -84998767 + FRAM SINE Alu 1 34 -278 2222 111 32 22 chr4 99289895 99290266 -84998396 + THE1C LTR MaLR 1 375 0 632 236 6 38 chr4 99290266 99290389 -84998273 + FRAM SINE Alu 34 152 -24 23 0 0 0 chr4 99290445 99290468 -84998194 + AT_rich Low_complexity Low_complexity 1 23 0 1350 260 56 4 chr4 99290531 99290997 -84997665 - L1M4 LINE L1 -3255 2891 2402 321 325 0 33 chr4 99291933 99292053 -84996609 - L1MC4 LINE L1 -1313 6729 6614 * 367 247 45 0 chr4 99291977 99292066 -84996596 + L1MC4 LINE L1 6614 6706 -1336 24 0 0 0 chr4 99292601 99292625 -84996037 + AT_rich Low_complexity Low_complexity 1 24 0 207 342 13 0 chr4 99293922 99294001 -84994661 + L2 LINE L2 3223 3302 -11 180 111 0 0 chr4 99294002 99294029 -84994633 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 6461 102 17 0 chr4 99294709 99296061 -84992601 - L1PA11 LINE L1 0 6174 4809 201 148 19 37 chr4 99296219 99296273 -84992389 + (TTATG)n Simple_repeat Simple_repeat 2 54 0 410 314 21 27 chr4 99296990 99297178 -84991484 + LTR33 LTR ERVL 334 520 -1 2291 94 0 0 chr4 99297747 99298046 -84990616 + AluSc SINE Alu 1 299 -10 204 312 88 48 chr4 99298145 99298270 -84990392 - L3 LINE CR1 -11 1566 1437 193 287 85 11 chr4 99298409 99298503 -84990159 - L3 LINE CR1 -294 1283 1183 9205 147 27 7 chr4 99298803 99300679 -84987983 + Tigger1 DNA MER2_type 1 1983 -435 6621 157 45 40 chr4 99300780 99302535 -84986127 + L1MA4 LINE L1 3972 5785 -515 327 65 0 0 chr4 99302535 99302581 -84986081 + MADE1 DNA Mariner 1 46 -34 6621 157 45 40 chr4 99302581 99302730 -84985932 + L1MA4 LINE L1 5785 5932 -368 838 177 0 49 chr4 99302731 99302905 -84985757 + L1MA4 LINE L1 6102 6266 -34 2202 117 0 3 chr4 99302905 99303203 -84985459 - AluSx SINE Alu -15 297 1 838 177 0 49 chr4 99303203 99303231 -84985431 + L1MA4 LINE L1 6266 6294 -6 1997 148 24 0 chr4 99303279 99303611 -84985051 + Tigger1 DNA MER2_type 2079 2418 0 1437 185 65 11 chr4 99303651 99303927 -84984735 + AluSx SINE Alu 1 291 -21 264 210 12 25 chr4 99304039 99304120 -84984542 - L1PB4 LINE L1 -9 6147 6068 1235 187 20 37 chr4 99304137 99304437 -84984225 - L1MA4 LINE L1 -9 6291 5997 2111 117 3 0 chr4 99304481 99304793 -84983869 - AluSx SINE Alu 0 313 1 195 200 164 0 chr4 99305179 99305234 -84983428 + MIR SINE MIR 180 243 -19 28 71 0 0 chr4 99305243 99305299 -84983363 + AT_rich Low_complexity Low_complexity 1 56 0 194 384 109 24 chr4 99305321 99305532 -84983130 + L2 LINE L2 2829 3057 -215 334 377 15 0 chr4 99306135 99306265 -84982397 + L2 LINE L2 3141 3272 0 258 273 0 0 chr4 99306451 99306528 -84982134 + (TA)n Simple_repeat Simple_repeat 1 77 0 1423 178 33 46 chr4 99306656 99306960 -84981702 + AluJo SINE Alu 1 300 -2 1989 143 0 0 chr4 99308260 99308553 -84980109 - AluSx SINE Alu -15 297 5 1636 191 77 20 chr4 99308797 99309237 -84979425 - MLT1C LTR MaLR 0 467 3 2248 90 7 3 chr4 99309250 99309550 -84979112 + AluSx SINE Alu 1 301 -11 314 224 63 127 chr4 99309733 99309938 -84978724 + L2 LINE L2 3122 3313 0 359 353 19 6 chr4 99310711 99310867 -84977795 + MIR SINE MIR 48 205 -57 1399 173 109 6 chr4 99311065 99311205 -84977457 - L1MA10 LINE L1 -7 6323 6199 212 59 29 0 chr4 99311205 99311239 -84977423 + (TG)n Simple_repeat Simple_repeat 2 36 0 1399 173 109 6 chr4 99311239 99311457 -84977205 - L1MA10 LINE L1 -131 6199 5906 241 61 0 0 chr4 99311454 99311487 -84977175 + L1MA10 LINE L1 5874 5906 -274 * 255 289 164 65 chr4 99312455 99312521 -84976141 - MIR SINE MIR -6 256 198 3069 139 15 26 chr4 99312521 99313054 -84975608 + MER1A DNA MER1_type 1 527 0 255 289 164 65 chr4 99313054 99313219 -84975443 - MIR SINE MIR -64 198 2 30 27 0 0 chr4 99314151 99314188 -84974474 + AT_rich Low_complexity Low_complexity 1 37 0 185 0 40 0 chr4 99314527 99314552 -84974110 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chr4 99314624 99314652 -84974010 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr4 99314793 99314822 -84973840 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7476 29 2 0 chr4 99317062 99318271 -84970391 - L1PA4 LINE L1 -3 6152 4942 24 0 0 0 chr4 99318766 99318790 -84969872 + AT_rich Low_complexity Low_complexity 1 24 0 8234 189 28 27 chr4 99319105 99320721 -84967941 + L1MA3 LINE L1 17 1633 -5932 420 37 102 20 chr4 99320724 99320960 -84967702 + (TA)n Simple_repeat Simple_repeat 1 255 0 679 56 39 39 chr4 99320975 99321155 -84967507 + (TA)n Simple_repeat Simple_repeat 1 180 0 212 97 32 65 chr4 99321166 99321228 -84967434 + T-rich Low_complexity Low_complexity 3 62 0 233 118 20 0 chr4 99321228 99321279 -84967383 + (TA)n Simple_repeat Simple_repeat 1 52 0 1025 55 0 0 chr4 99321279 99321406 -84967256 - L1PA5 LINE L1 -9 6145 6019 5276 135 32 11 chr4 99321406 99322267 -84966395 + L1MA3 LINE L1 1627 2506 -5059 6326 122 35 7 chr4 99322275 99323566 -84965096 + L1MA3 LINE L1 6393 7718 -6 23 68 0 0 chr4 99324764 99324808 -84963854 + AT_rich Low_complexity Low_complexity 1 44 0 2287 33 0 0 chr4 99324863 99325158 -84963504 + L1PA4 LINE L1 5870 6164 0 1794 236 50 23 chr4 99325166 99326394 -84962268 + L1MB7 LINE L1 1532 2889 -3493 267 167 0 0 chr4 99326394 99326436 -84962226 - Tigger7 DNA MER2_type -297 42 1 * 423 167 90 0 chr4 99326436 99326505 -84962157 + MLT2B1 LTR ERVL 354 429 -91 3303 199 23 41 chr4 99326515 99327304 -84961358 + L1MB7 LINE L1 5646 6420 0 27 0 0 0 chr4 99327666 99327693 -84960969 + AT_rich Low_complexity Low_complexity 1 27 0 1620 167 4 11 chr4 99327716 99327979 -84960683 - AluJo SINE Alu -35 277 17 618 310 57 81 chr4 99328006 99328464 -84960198 - LTR67 LTR ERVL -106 451 5 1982 88 4 11 chr4 99329833 99330107 -84958555 - AluY SINE Alu -1 310 39 21 36 0 0 chr4 99330496 99330524 -84958138 + AT_rich Low_complexity Low_complexity 1 28 0 2105 118 20 0 chr4 99331919 99332224 -84956438 + AluSp SINE Alu 3 313 0 438 20 0 0 chr4 99332226 99332277 -84956385 + (GGAA)n Simple_repeat Simple_repeat 3 53 0 1393 28 17 0 chr4 99332277 99332454 -84956208 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 403 329 63 25 chr4 99337823 99337981 -84950681 - MIR SINE MIR -87 175 12 2294 94 7 3 chr4 99338160 99338469 -84950193 - AluY SINE Alu -1 310 1 22 0 0 0 chr4 99338762 99338784 -84949878 + AT_rich Low_complexity Low_complexity 1 22 0 228 327 125 10 chr4 99339031 99339135 -84949527 - L2 LINE L2 -220 3052 2937 21 0 0 0 chr4 99339498 99339519 -84949143 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 99340417 99340442 -84948220 + AT_rich Low_complexity Low_complexity 1 25 0 566 350 89 28 chr4 99340442 99340836 -84947826 - L2 LINE L2 -19 3294 2877 1033 252 175 11 chr4 99341147 99341588 -84947074 + L2 LINE L2 1859 2371 -943 1060 275 132 28 chr4 99341591 99342060 -84946602 + LTR53 LTR ERVL 2 519 0 521 381 138 15 chr4 99342060 99342890 -84945772 + L2 LINE L2 2372 3313 0 5784 191 16 15 chr4 99343538 99344755 -84943907 - L1P LINE L1 -2792 3354 2137 943 255 160 5 chr4 99345086 99345455 -84943207 - L1ME LINE L1 -359 5811 5386 2381 265 77 24 chr4 99345562 99346775 -84941887 - L1ME LINE L1 -747 5399 4146 350 202 0 43 chr4 99346816 99346910 -84941752 - L1MA8 LINE L1 -10 6281 6192 4743 207 27 3 chr4 99346925 99348679 -84939983 - L1MA9 LINE L1 -232 6080 4295 2887 179 41 16 chr4 99348673 99349286 -84939376 + L1MA9 LINE L1 3652 4279 -1867 * 993 209 11 6 chr4 99349331 99349513 -84939149 + Tigger2 DNA MER2_type 2535 2717 -1 896 94 0 8 chr4 99350170 99350297 -84938365 + LTR7 LTR ERV1 1 126 -324 236 213 51 19 chr4 99350397 99350471 -84938191 - MIR SINE MIR -62 146 70 243 0 0 0 chr4 99350557 99350584 -84938078 + (TC)n Simple_repeat Simple_repeat 2 28 0 235 162 0 0 chr4 99350584 99350621 -84938041 - Alu SINE Alu -14 285 249 924 192 24 29 chr4 99350685 99350893 -84937769 + MER3 DNA MER1_type 1 207 -2 2968 124 15 25 chr4 99351054 99351580 -84937082 - L1MA4 LINE L1 -10 6290 5770 5179 110 18 63 chr4 99351701 99352653 -84936009 - L1MA7 LINE L1 -5 6286 5378 3261 173 11 23 chr4 99352653 99353149 -84935513 + L1 LINE L1 4697 5183 -983 1688 87 13 9 chr4 99353149 99353378 -84935284 + MER30 DNA MER1_type 1 230 0 3261 173 11 23 chr4 99353378 99353617 -84935045 + L1 LINE L1 5183 5423 -743 23 33 0 0 chr4 99353881 99353911 -84934751 + AT_rich Low_complexity Low_complexity 1 30 0 700 317 75 4 chr4 99354086 99354326 -84934336 - MIR SINE MIR -4 258 2 18868 30 1 1 chr4 99354410 99357469 -84931193 - L1PA4 LINE L1 -1 6154 3096 765 238 72 0 chr4 99358026 99358207 -84930455 + MER20 DNA MER1_type 7 200 -19 581 250 57 17 chr4 99358217 99358393 -84930269 + MER5A DNA MER1_type 1 183 -6 254 234 0 0 chr4 99358836 99358883 -84929779 - L2 LINE L2 -8 3264 3218 1770 155 13 7 chr4 99360844 99361154 -84927508 + L1PB1 LINE L1 5837 6148 -3 24 0 0 0 chr4 99361154 99361178 -84927484 + AT_rich Low_complexity Low_complexity 1 24 0 206 284 137 0 chr4 99361325 99361427 -84927235 - MIR SINE MIR -38 224 109 25 0 0 0 chr4 99361531 99361556 -84927106 + AT_rich Low_complexity Low_complexity 1 25 0 2866 87 0 22 chr4 99361890 99362303 -84926359 - L1PA8A LINE L1 0 6131 5728 212 262 0 0 chr4 99362741 99362783 -84925879 + L2 LINE L2 3186 3227 -45 * 318 335 102 18 chr4 99362777 99362944 -84925718 - MIR3 SINE MIR -17 191 11 23 0 0 0 chr4 99363093 99363116 -84925546 + AT_rich Low_complexity Low_complexity 1 23 0 22280 57 7 18 chr4 99363239 99367012 -84921650 - L1PA6 LINE L1 -6 6148 2405 1616 159 3 41 chr4 99367016 99367329 -84921333 - AluSx SINE Alu 0 312 11 2042 129 0 28 chr4 99367362 99367679 -84920983 - AluSg SINE Alu -2 308 1 1973 183 24 5 chr4 99368446 99368824 -84919838 - MLT1B LTR MaLR -5 385 1 234 326 0 12 chr4 99369537 99369623 -84919039 + CT-rich Low_complexity Low_complexity 2 86 0 21 36 0 0 chr4 99371406 99371434 -84917228 + AT_rich Low_complexity Low_complexity 1 28 0 1807 69 9 0 chr4 99371890 99372122 -84916540 - AluY SINE Alu -77 234 1 532 318 128 57 chr4 99372266 99373182 -84915480 + L2 LINE L2 1776 2756 -558 4734 155 44 19 chr4 99373667 99374677 -84913985 - L1PA16 LINE L1 0 6166 5134 2125 245 6 2 chr4 99374706 99375082 -84913580 + L1P LINE L1 3807 4187 -1959 2189 103 7 0 chr4 99375082 99375372 -84913290 + AluSx SINE Alu 1 292 -20 2125 245 6 2 chr4 99375372 99375476 -84913186 + L1P LINE L1 4187 4289 -1857 4178 210 11 23 chr4 99375481 99376477 -84912185 + L1 LINE L1 4152 5135 -1011 350 266 83 9 chr4 99377270 99377505 -84911157 - L1M4b LINE L1 -4887 1536 1300 21 36 0 0 chr4 99377592 99377620 -84911042 + AT_rich Low_complexity Low_complexity 1 28 0 1676 188 0 3 chr4 99377620 99377907 -84910755 - AluJb SINE Alu -26 286 1 286 241 28 35 chr4 99378083 99378228 -84910434 + (TA)n Simple_repeat Simple_repeat 2 145 0 198 71 0 0 chr4 99378246 99378274 -84910388 + (CA)n Simple_repeat Simple_repeat 2 29 0 285 29 0 0 chr4 99379137 99379171 -84909491 + (TC)n Simple_repeat Simple_repeat 1 34 0 225 0 0 0 chr4 99379170 99379195 -84909467 + (CA)n Simple_repeat Simple_repeat 1 25 0 * 2552 46 0 7 chr4 99379379 99379686 -84908976 + AluY SINE Alu 4 308 -3 243 256 12 49 chr4 99379879 99379961 -84908701 + MIR SINE MIR 60 138 -70 494 265 81 8 chr4 99380464 99380648 -84908014 + MLT1B LTR MaLR 1 187 -187 258 211 0 18 chr4 99380648 99380705 -84907957 + CT-rich Low_complexity Low_complexity 1 56 0 800 241 18 0 chr4 99380730 99380900 -84907762 + MLT1B LTR MaLR 207 379 -11 1584 109 4 38 chr4 99380950 99381189 -84907473 + AluSg SINE Alu 7 237 -73 306 295 208 38 chr4 99381197 99381380 -84907282 - MIR SINE MIR -48 214 1 702 356 110 21 chr4 99381665 99381763 -84906899 - L2 LINE L2 0 3313 3225 1933 117 23 13 chr4 99381763 99382071 -84906591 + AluSx SINE Alu 1 311 -1 702 356 110 21 chr4 99382071 99382840 -84905822 - L2 LINE L2 -88 3225 2365 183 333 0 13 chr4 99382982 99383060 -84905602 + MIR SINE MIR 176 252 -10 5583 162 5 9 chr4 99383136 99384561 -84904101 + L1M2 LINE L1 4338 5761 -539 266 339 102 17 chr4 99384753 99384930 -84903732 + L2 LINE L2 2028 2219 -1095 53 30 0 0 chr4 99385100 99385167 -84903495 + AT_rich Low_complexity Low_complexity 1 67 0 848 39 0 0 chr4 99385462 99385564 -84903098 - L1PA3 LINE L1 -2242 3904 3803 12048 31 8 0 chr4 99385564 99387782 -84900880 + L1PA3 LINE L1 3927 6155 0 6543 83 12 1 chr4 99387796 99388749 -84899913 - L1P LINE L1 -734 5420 4459 3050 41 0 0 chr4 99388749 99389114 -84899548 + L1PA7 LINE L1 5465 5829 -325 24245 24 4 0 chr4 99389115 99391387 -84897275 + L1PA4 LINE L1 49 2303 -3852 24245 39 3 0 chr4 99391387 99395152 -84893510 + L1PA4 LINE L1 2386 6152 -3 24245 24 4 0 chr4 99395152 99395174 -84893488 + L1PA4 LINE L1 2303 6152 -3 6224 31 4 0 chr4 99395261 99396003 -84892659 + L1PA4 LINE L1 5408 6152 -3 180 0 0 0 chr4 99396035 99396055 -84892607 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 6415 25 0 0 chr4 99396112 99396860 -84891802 + L1PA3 LINE L1 5408 6155 0 21 36 0 0 chr4 99397778 99397806 -84890856 + AT_rich Low_complexity Low_complexity 1 28 0 2234 101 0 7 chr4 99398137 99398433 -84890229 + AluSg SINE Alu 1 294 -16 670 318 113 18 chr4 99398633 99399013 -84889649 - L2 LINE L2 -5 3308 2893 23 0 0 0 chr4 99399139 99399162 -84889500 + AT_rich Low_complexity Low_complexity 1 23 0 341 355 74 0 chr4 99400044 99400165 -84888497 - L2 LINE L2 -2 3270 3141 222 37 0 0 chr4 99404614 99404641 -84884021 + (CA)n Simple_repeat Simple_repeat 2 28 0 314 290 105 40 chr4 99406892 99407092 -84881570 + MIR SINE MIR 40 252 -10 927 301 46 65 chr4 99407108 99407685 -84880977 + L2 LINE L2 2648 3221 -92 23 68 0 0 chr4 99407788 99407832 -84880830 + AT_rich Low_complexity Low_complexity 1 44 0 2326 29 0 0 chr4 99407887 99408182 -84880480 + L1PA4 LINE L1 5870 6164 0 2561 230 118 16 chr4 99408190 99409418 -84879244 + L1MB7 LINE L1 1532 2889 -3493 268 167 0 0 chr4 99409418 99409460 -84879202 - Tigger7 DNA MER2_type -297 42 1 * 427 167 90 0 chr4 99409460 99409529 -84879133 + MLT2B1 LTR ERVL 354 429 -91 3243 200 23 41 chr4 99409539 99410328 -84878334 + L1MB7 LINE L1 5646 6420 0 27 0 0 0 chr4 99410690 99410717 -84877945 + AT_rich Low_complexity Low_complexity 1 27 0 1640 167 4 11 chr4 99410740 99411003 -84877659 - AluJo SINE Alu -35 277 17 621 310 57 81 chr4 99411030 99411488 -84877174 - LTR67 LTR ERVL -106 451 5 2008 88 4 11 chr4 99412857 99413131 -84875531 - AluY SINE Alu -1 310 39 205 301 27 0 chr4 99413214 99413287 -84875375 + (CATCC)n Simple_repeat Simple_repeat 2 76 0 21 36 0 0 chr4 99413508 99413536 -84875126 + AT_rich Low_complexity Low_complexity 1 28 0 2088 121 20 0 chr4 99414931 99415408 -84873254 + AluSp SINE Alu 3 485 0 1039 112 11 11 chr4 99415229 99415443 -84873219 + (GAAA)n Simple_repeat Simple_repeat 2 215 0 396 329 63 25 chr4 99420795 99420953 -84867709 - MIR SINE MIR -87 175 12 2280 100 7 3 chr4 99421132 99421441 -84867221 - AluY SINE Alu -1 310 1 22 0 0 0 chr4 99421734 99421756 -84866906 + AT_rich Low_complexity Low_complexity 1 22 0 226 327 125 10 chr4 99422003 99422107 -84866555 - L2 LINE L2 -220 3052 2937 21 0 0 0 chr4 99422470 99422491 -84866171 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 99423389 99423414 -84865248 + AT_rich Low_complexity Low_complexity 1 25 0 592 333 96 35 chr4 99423414 99423808 -84864854 - L2 LINE L2 -19 3294 2877 1036 256 175 11 chr4 99424119 99424560 -84864102 + L2 LINE L2 1859 2371 -943 1073 275 132 28 chr4 99424563 99425032 -84863630 + LTR53 LTR ERVL 2 519 0 520 380 138 15 chr4 99425032 99425862 -84862800 + L2 LINE L2 2372 3313 0 5736 189 17 14 chr4 99426510 99427713 -84860949 - L1P LINE L1 -2792 3354 2149 948 252 160 5 chr4 99428053 99428422 -84860240 - L1ME LINE L1 -359 5811 5386 2214 265 77 26 chr4 99428529 99429744 -84858918 - L1ME LINE L1 -747 5399 4146 344 202 0 43 chr4 99429785 99429879 -84858783 - L1MA8 LINE L1 -10 6281 6192 4609 205 30 3 chr4 99429894 99431642 -84857020 - L1MA9 LINE L1 -232 6080 4295 2877 178 41 16 chr4 99431636 99432249 -84856413 + L1MA9 LINE L1 3652 4279 -1867 * 974 214 11 6 chr4 99432294 99432476 -84856186 + Tigger2 DNA MER2_type 2535 2717 -1 2508 104 58 21 chr4 99433133 99433565 -84855097 + LTR7 LTR ERV1 1 448 -2 20588 93 18 7 chr4 99433567 99436531 -84852131 + HERVH LTR ERV1 1 2995 -4718 915 133 7 0 chr4 99436510 99436660 -84852002 + HERVH LTR ERV1 3140 3290 -4423 * 3229 115 10 0 chr4 99436659 99437146 -84851516 + HERVH LTR ERV1 3500 3991 -3722 * 4202 152 8 1 chr4 99437145 99437810 -84850852 + HERVH LTR ERV1 4481 5149 -2564 1391 124 17 17 chr4 99437795 99438028 -84850634 + HERVH LTR ERV1 5587 5819 -1894 * 2406 90 48 13 chr4 99438028 99438405 -84850257 + HERVH LTR ERV1 7324 7713 0 2358 121 60 21 chr4 99438405 99438836 -84849826 + LTR7 LTR ERV1 1 448 -2 1389 209 134 0 chr4 99439094 99439414 -84849248 - MER47A DNA MER2_type 0 366 4 819 149 43 0 chr4 99439416 99439577 -84849085 - L1MA8 LINE L1 -28 6263 6096 261 367 0 9 chr4 99439882 99439991 -84848671 + MIR SINE MIR 100 207 -55 2141 131 0 16 chr4 99440426 99440739 -84847923 - AluSx SINE Alu -4 308 1 21 0 0 0 chr4 99440748 99440769 -84847893 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 99441053 99441078 -84847584 + AT_rich Low_complexity Low_complexity 1 25 0 314 273 10 50 chr4 99441461 99441560 -84847102 + MLT1H LTR MaLR 61 155 -394 322 217 253 24 chr4 99441727 99441893 -84846769 + MLT1H LTR MaLR 320 523 -26 230 162 0 0 chr4 99442013 99442050 -84846612 + MER57A LTR ERV1 2 38 -365 1441 150 0 9 chr4 99442076 99442303 -84846359 + MER4E LTR ERV1 555 779 0 1854 179 21 0 chr4 99443909 99444245 -84844417 - MER2 DNA MER2_type 0 344 2 1663 224 151 52 chr4 99444366 99445023 -84843639 + MER50 LTR ERV1 1 722 -12 319 316 10 0 chr4 99445037 99445135 -84843527 - MIR SINE MIR -7 255 157 657 192 0 0 chr4 99445136 99445240 -84843422 + LTR18A LTR ERVL 1 104 -253 3906 151 23 0 chr4 99445244 99445848 -84842814 + HERVL18 LTR ERVL 5430 6047 0 1258 218 149 37 chr4 99445849 99446071 -84842591 + LTR18A LTR ERVL 1 271 -86 2562 50 3 0 chr4 99446071 99446374 -84842288 - AluY SINE Alu -7 304 1 1258 218 149 37 chr4 99446374 99446472 -84842190 + LTR18A LTR ERVL 271 357 0 199 273 23 0 chr4 99446479 99446523 -84842139 - MIR SINE MIR -203 59 15 388 149 35 0 chr4 99446928 99447015 -84841647 - L1PA13 LINE L1 -3 6160 6071 234 319 86 0 chr4 99448131 99448247 -84840415 - MER94 DNA DNA 0 134 9 23 0 0 0 chr4 99448286 99448309 -84840353 + AT_rich Low_complexity Low_complexity 1 23 0 1711 211 86 25 chr4 99448534 99449047 -84839615 + Charlie1 DNA MER1_type 2 545 -2216 4788 107 0 0 chr4 99449059 99450101 -84838561 - L1PA8A LINE L1 0 6131 5188 7711 150 17 5 chr4 99450104 99451432 -84837230 + L1P LINE L1 3679 5023 -1123 582 164 18 0 chr4 99451532 99451642 -84837020 + MER2 DNA MER2_type 128 239 -106 1074 157 94 11 chr4 99451916 99452107 -84836555 - MER61C LTR ERV1 0 434 228 7132 140 15 26 chr4 99452116 99452967 -84835695 + THE1C-int LTR MaLR 427 1263 -317 2191 131 0 0 chr4 99452967 99453272 -84835390 + AluSx SINE Alu 7 311 -1 7132 140 15 26 chr4 99453272 99453587 -84835075 + THE1C-int LTR MaLR 1263 1580 0 1639 145 61 90 chr4 99453587 99453928 -84834734 + THE1C LTR MaLR 1 332 -43 1896 139 7 4 chr4 99453928 99454229 -84834433 - AluSq SINE Alu 0 302 1 1639 145 61 90 chr4 99454229 99454265 -84834397 + THE1C LTR MaLR 332 368 -7 333 210 154 91 chr4 99455062 99455205 -84833457 + MER110 LTR ERV1 317 468 -23 396 296 28 81 chr4 99455246 99455268 -84833394 - L2 LINE L2 -493 2821 2799 2018 171 43 3 chr4 99455268 99455643 -84833019 + MLT1B LTR MaLR 1 390 0 396 296 28 81 chr4 99455643 99455904 -84832758 - L2 LINE L2 -515 2799 2553 630 264 102 27 chr4 99455995 99456375 -84832287 - MLT1J LTR MaLR -7 504 57 2098 97 14 4 chr4 99456375 99456654 -84832008 - AluY SINE Alu -8 303 22 630 264 102 27 chr4 99456654 99456690 -84831972 - MLT1J LTR MaLR -454 57 25 1237 134 14 37 chr4 99456945 99457160 -84831502 - THE1B LTR MaLR 0 364 155 1730 211 86 29 chr4 99457160 99457706 -84830956 - LTR14C LTR ERVK 0 587 11 984 113 99 7 chr4 99457709 99457860 -84830802 - THE1B LTR MaLR -199 165 1 6281 73 0 2 chr4 99457866 99458663 -84829999 - THE1B-int LTR MaLR -5 1575 781 303 351 45 0 chr4 99458873 99459007 -84829655 - L2 LINE L2 0 3272 3133 24 85 0 0 chr4 99459303 99459362 -84829300 + AT_rich Low_complexity Low_complexity 1 59 0 186 350 17 0 chr4 99459469 99459529 -84829133 + MIR SINE MIR 81 141 -67 405 59 0 0 chr4 99459750 99459801 -84828861 + THE1C LTR MaLR 1 51 -324 4926 42 2 0 chr4 99460411 99461001 -84827661 + LTR10C LTR ERV1 1 591 0 234 276 10 41 chr4 99461054 99461152 -84827510 + GA-rich Low_complexity Low_complexity 2 96 0 1154 262 77 6 chr4 99461281 99461647 -84827015 + MER63B DNA MER1_type 43 434 -2 237 167 109 132 chr4 99461818 99461992 -84826670 + HAL1 LINE L1 61 230 -2277 387 0 0 0 chr4 99462096 99462139 -84826523 + (TG)n Simple_repeat Simple_repeat 1 43 0 257 351 106 45 chr4 99462544 99462793 -84825869 - L2 LINE L2 -252 3020 2757 220 262 16 0 chr4 99463583 99463644 -84825018 + (TG)n Simple_repeat Simple_repeat 2 63 0 233 73 122 0 chr4 99464622 99464663 -84823999 - MER53 DNA DNA -8 181 136 277 338 77 18 chr4 99465018 99465240 -84823422 + MIR SINE MIR 26 260 -2 271 198 62 49 chr4 99466422 99466503 -84822159 + MLT1K LTR MaLR 484 565 -23 1608 220 34 34 chr4 99466980 99467393 -84821269 + MLT1C LTR MaLR 55 467 0 281 322 11 11 chr4 99468047 99468137 -84820525 + L2 LINE L2 3183 3272 0 1654 137 88 18 chr4 99468614 99468898 -84819764 + AluSx SINE Alu 1 304 -8 294 206 0 62 chr4 99469732 99469829 -84818833 + L1P LINE L1 4283 4373 -1773 278 321 45 18 chr4 99470405 99470517 -84818145 - MER5A DNA MER1_type -24 165 51 * 321 357 29 7 chr4 99470417 99470557 -84818105 + MER5A DNA MER1_type 47 189 0 350 297 92 20 chr4 99471166 99471361 -84817301 - MLT1L LTR MaLR -47 568 360 222 91 0 0 chr4 99471409 99471442 -84817220 + (T)n Simple_repeat Simple_repeat 1 33 0 801 339 11 8 chr4 99471875 99472135 -84816527 + MIR SINE MIR 2 262 0 21 0 0 0 chr4 99472457 99472478 -84816184 + AT_rich Low_complexity Low_complexity 1 21 0 375 350 37 18 chr4 99474279 99474442 -84814220 - MIR SINE MIR -51 211 46 340 239 14 0 chr4 99474678 99474749 -84813913 - L2 LINE L2 0 3313 3242 197 123 62 0 chr4 99474749 99474814 -84813848 + (TA)n Simple_repeat Simple_repeat 2 70 0 492 356 61 26 chr4 99474814 99475126 -84813536 - L2 LINE L2 -67 3246 2924 192 40 0 0 chr4 99475501 99475526 -84813136 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 510 320 69 27 chr4 99476262 99476668 -84811994 - MARNA DNA Mariner -89 497 75 30 0 0 0 chr4 99476913 99476943 -84811719 + AT_rich Low_complexity Low_complexity 1 30 0 519 248 113 100 chr4 99477360 99477812 -84810850 - LTR16B LTR ERVL -6 458 1 23 86 0 0 chr4 99478388 99478446 -84810216 + AT_rich Low_complexity Low_complexity 1 58 0 2425 65 0 0 chr4 99479869 99480162 -84808500 - AluY SINE Alu -15 296 4 729 160 32 0 chr4 99480348 99480473 -84808189 - FLAM_C SINE Alu -12 131 3 2573 40 0 0 chr4 99480484 99480785 -84807877 - AluY SINE Alu -10 301 1 591 338 33 17 chr4 99480970 99481210 -84807452 - MIR SINE MIR 0 262 19 231 246 164 52 chr4 99481493 99481627 -84807035 - MER5A DNA MER1_type -1 188 40 724 219 110 9 chr4 99483028 99483247 -84805415 - L1MD3 LINE L1 -935 7060 6820 2464 58 3 3 chr4 99484186 99484496 -84804166 - AluY SINE Alu -1 310 1 360 247 0 0 chr4 99484537 99484610 -84804052 + L2 LINE L2 3241 3313 0 189 206 64 170 chr4 99485314 99485455 -84803207 - MIR SINE MIR -63 145 20 661 104 55 0 chr4 99485522 99485727 -84802935 + (TA)n Simple_repeat Simple_repeat 1 216 0 1740 149 3 62 chr4 99486330 99486651 -84802011 + AluJo SINE Alu 1 302 -10 1082 139 24 32 chr4 99486736 99486872 -84801790 - L1MA7 LINE L1 -258 6033 5897 273 75 0 0 chr4 99486872 99486912 -84801750 + (TA)n Simple_repeat Simple_repeat 1 40 0 1082 139 24 32 chr4 99486912 99487072 -84801590 - L1MA7 LINE L1 -394 5897 5616 1235 87 52 35 chr4 99487098 99487327 -84801335 + L1MA7 LINE L1 6059 6291 0 203 136 45 0 chr4 99487491 99487535 -84801127 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 387 330 82 24 chr4 99488598 99488804 -84799858 - L3b LINE CR1 -264 1319 1102 181 233 150 0 chr4 99489371 99489431 -84799231 + L2 LINE L2 3204 3272 0 290 154 37 154 chr4 99489953 99490089 -84798573 + MIR SINE MIR 118 237 -25 651 131 8 15 chr4 99490340 99490470 -84798192 + (TTCC)n Simple_repeat Simple_repeat 1 129 0 277 290 0 9 chr4 99490526 99490633 -84798029 + (TCTA)n Simple_repeat Simple_repeat 2 107 0 1460 176 58 77 chr4 99490636 99491000 -84797662 - MLT1A2 LTR MaLR -11 363 7 2022 165 3 6 chr4 99491504 99491856 -84796806 + Tigger3b DNA MER2_type 15 365 -866 920 120 0 0 chr4 99491856 99491981 -84796681 + AluSq/x SINE Alu 1 125 -187 2238 145 55 30 chr4 99492007 99492166 -84796496 + Tigger3b DNA MER2_type 350 503 -2525 396 59 0 0 chr4 99492166 99492217 -84796445 + (TG)n Simple_repeat Simple_repeat 2 52 0 1634 177 3 7 chr4 99492217 99492500 -84796162 - AluJb SINE Alu -27 285 4 2238 145 55 30 chr4 99492500 99492805 -84795857 + Tigger3b DNA MER2_type 502 827 -404 660 173 62 53 chr4 99492805 99493017 -84795645 - LTR45B LTR ERV1 0 609 344 2338 158 33 5 chr4 99493320 99493718 -84794944 + Tigger3b DNA MER2_type 822 1230 -1 510 251 102 12 chr4 99494176 99494343 -84794319 + MIR SINE MIR 51 232 -30 794 257 57 12 chr4 99495133 99495378 -84793284 + MIR SINE MIR 3 258 -4 26 50 0 0 chr4 99496806 99496846 -84791816 + AT_rich Low_complexity Low_complexity 1 40 0 715 262 35 15 chr4 99496939 99497141 -84791521 + MIR SINE MIR 32 237 -25 276 263 92 72 chr4 99498153 99498305 -84790357 - L2 LINE L2 -9 3304 3150 29 70 0 0 chr4 99498333 99498390 -84790272 + AT_rich Low_complexity Low_complexity 1 57 0 406 244 158 8 chr4 99498585 99498712 -84789950 - L2 LINE L2 -1 3312 3167 1917 297 174 53 chr4 99499006 99500547 -84788115 + L2 LINE L2 1348 3076 -237 647 258 21 58 chr4 99500677 99500917 -84787745 - L2 LINE L2 0 3313 3083 185 283 17 17 chr4 99501073 99501133 -84787529 - MIR SINE MIR -64 144 85 508 265 81 50 chr4 99501205 99501488 -84787174 - MER97c DNA MER1_type? 0 1090 799 1234 211 66 76 chr4 99501497 99501891 -84786771 + MLT1B LTR MaLR 1 390 0 2203 232 26 32 chr4 99502209 99502327 -84786335 - MER97b DNA MER1_type? -448 605 488 4383 118 14 18 chr4 99502327 99503046 -84785616 - L1PA13 LINE L1 0 6163 5448 2203 232 26 32 chr4 99503046 99503496 -84785166 - MER97b DNA MER1_type? -565 488 40 5407 133 9 9 chr4 99503717 99505181 -84783481 + L1PA16 LINE L1 4692 6157 -9 2151 77 34 27 chr4 99506599 99506896 -84781766 - AluY SINE Alu -12 299 1 2821 107 18 5 chr4 99507307 99507747 -84780915 + L1MA3 LINE L1 5726 6171 -134 9662 146 20 32 chr4 99507747 99508553 -84780109 - Tigger1 DNA MER2_type -764 1654 839 2007 140 0 3 chr4 99508553 99508853 -84779809 - AluSx SINE Alu -13 299 1 9662 146 20 32 chr4 99508853 99509569 -84779093 - Tigger1 DNA MER2_type -1579 839 116 279 0 0 0 chr4 99509569 99509600 -84779062 + (TTA)n Simple_repeat Simple_repeat 3 33 0 1548 57 0 0 chr4 99509600 99509792 -84778870 - L1PA3 LINE L1 -18 6137 5946 9662 146 20 32 chr4 99509792 99509942 -84778720 - Tigger1 DNA MER2_type -2300 118 1 2840 29 12 0 chr4 99510713 99511054 -84777608 + L1PA3 LINE L1 5811 6155 0 936 330 126 9 chr4 99512520 99512972 -84775690 - L2 LINE L2 0 3313 2809 466 313 44 16 chr4 99513000 99513182 -84775480 + L2 LINE L2 1057 1243 -2071 * 2018 302 119 22 chr4 99513176 99514061 -84774601 - L2 LINE L2 -932 2382 1383 4661 160 68 8 chr4 99514061 99514913 -84773749 - MER4D LTR ERV1 0 903 1 2018 302 119 22 chr4 99514913 99515052 -84773610 - L2 LINE L2 -1931 1383 1259 314 376 20 40 chr4 99515075 99515325 -84773337 - L2 LINE L2 -2690 624 380 2197 93 0 0 chr4 99515360 99515649 -84773013 - AluY SINE Alu 0 311 23 443 207 0 63 chr4 99515982 99516093 -84772569 + L1M1 LINE L1 28 131 -7434 192 393 54 9 chr4 99516121 99516233 -84772429 + L2 LINE L2 3156 3272 0 212 139 47 0 chr4 99516311 99516354 -84772308 + (TA)n Simple_repeat Simple_repeat 1 45 0 347 332 109 36 chr4 99516530 99516804 -84771858 + L2 LINE L2 1697 1990 -1324 434 329 65 56 chr4 99517956 99518388 -84770274 - L2 LINE L2 -412 2902 2467 292 378 33 65 chr4 99518387 99518694 -84769968 + L2 LINE L2 2969 3265 -7 * 1494 205 87 6 chr4 99519415 99519737 -84768925 + MER7A DNA MER2_type 1 346 0 337 176 15 44 chr4 99520376 99520444 -84768218 - L1MC/D LINE L1 -2235 5550 5485 2277 190 89 26 chr4 99520459 99521117 -84767545 - Tigger7 DNA MER2_type -21 2566 1 1138 233 42 42 chr4 99521117 99521640 -84767022 - L1MC/D LINE L1 -762 5384 4969 311 266 110 40 chr4 99521641 99521814 -84766848 - L2 LINE L2 -855 2459 2275 549 196 38 38 chr4 99522093 99522226 -84766436 + AluJo SINE Alu 122 254 -58 228 217 0 22 chr4 99522295 99522341 -84766321 + L2 LINE L2 3210 3254 -18 678 349 24 7 chr4 99522855 99523150 -84765512 + L2 LINE L2 2185 2484 -830 809 251 80 70 chr4 99523244 99523659 -84765003 - MLT1J1 LTR MaLR -27 419 1 190 319 11 33 chr4 99523721 99523812 -84764850 + L2 LINE L2 2914 3002 -270 368 299 120 8 chr4 99523892 99524009 -84764653 + L2 LINE L2 3134 3263 -9 2659 163 13 2 chr4 99524115 99524593 -84764069 - MER31A LTR ERV1 0 485 3 239 298 26 61 chr4 99524929 99525043 -84763619 - MIR SINE MIR -122 140 31 420 202 12 0 chr4 99526199 99526283 -84762379 + MER67C LTR ERV1 1 85 -429 1375 217 54 52 chr4 99526328 99526809 -84761853 + MER67C LTR ERV1 68 514 0 376 249 53 112 chr4 99527081 99527278 -84761384 + MIR SINE MIR 45 234 -28 21 57 0 0 chr4 99527379 99527414 -84761248 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr4 99527607 99527634 -84761028 + AT_rich Low_complexity Low_complexity 1 27 0 270 193 398 0 chr4 99528140 99528228 -84760434 + MLT2B1 LTR ERVL 398 520 0 318 123 0 0 chr4 99528946 99529003 -84759659 + (TA)n Simple_repeat Simple_repeat 2 58 0 252 191 22 11 chr4 99529006 99529095 -84759567 - L1MC4 LINE L1 -1339 6703 6614 298 275 47 34 chr4 99529243 99529392 -84759270 + MLT1L LTR MaLR 354 504 -111 352 271 43 29 chr4 99531920 99532060 -84756602 + L1ME LINE L1 5596 5737 -384 30861 105 10 26 chr4 99532540 99539039 -84749623 + L1PA7 LINE L1 5 6490 0 2147 95 3 3 chr4 99540576 99540884 -84747778 + AluY SINE Alu 1 308 0 1277 183 28 17 chr4 99541676 99542083 -84746579 + LTR32 LTR ERVL 27 466 -5 2566 100 17 8 chr4 99543901 99544262 -84744400 + THE1B LTR MaLR 1 364 0 608 215 69 0 chr4 99547324 99547468 -84741194 - MER20 DNA MER1_type 0 219 66 1820 194 11 11 chr4 99548030 99548391 -84740271 + MLT1A1 LTR MaLR 5 365 0 1378 239 69 9 chr4 99548503 99548850 -84739812 + MLT1F LTR MaLR 175 542 0 2722 84 3 0 chr4 99549523 99549868 -84738794 + THE1A LTR MaLR 1 346 -9 11866 86 2 18 chr4 99549868 99551457 -84737205 + THE1A-int LTR MaLR 16 1580 0 2612 99 0 0 chr4 99551457 99551812 -84736850 + THE1A LTR MaLR 1 355 0 261 295 13 26 chr4 99552657 99552735 -84735927 + MLT1K LTR MaLR 327 403 -185 * 352 141 66 99 chr4 99552731 99552852 -84735810 + MLT1F LTR MaLR 17 133 -460 244 220 20 0 chr4 99552875 99552925 -84735737 + CT-rich Low_complexity Low_complexity 1 51 0 394 217 301 29 chr4 99552931 99552942 -84735720 + MLT1F LTR MaLR 163 170 -372 231 36 0 0 chr4 99552942 99552970 -84735692 + (TTCTCC)n Simple_repeat Simple_repeat 1 28 0 394 217 301 29 chr4 99552970 99553230 -84735432 + MLT1F LTR MaLR 170 508 -34 318 245 216 0 chr4 99554092 99554231 -84734431 + L1ME LINE L1 717 885 -5185 22 70 0 0 chr4 99555548 99555591 -84733071 + AT_rich Low_complexity Low_complexity 1 43 0 2299 145 55 2 chr4 99556370 99556785 -84731877 + L1PA16 LINE L1 5728 6164 -2 1040 193 84 0 chr4 99556922 99557135 -84731527 + LOR1b LTR ERV1 1 231 -230 1680 237 57 3 chr4 99557139 99557527 -84731135 - MLT2B1 LTR ERVL -94 426 18 2504 135 5 10 chr4 99557527 99557934 -84730728 - L1PA16 LINE L1 -313 5853 5449 863 249 54 23 chr4 99557934 99558155 -84730507 - MER97c DNA MER1_type? -598 492 265 894 60 22 8 chr4 99558287 99558321 -84730341 + (TTCC)n Simple_repeat Simple_repeat 1 170 0 894 60 22 8 chr4 99558321 99558455 -84730207 + (TTCC)n Simple_repeat Simple_repeat 4 139 0 2279 202 49 34 chr4 99558491 99559205 -84729457 - L1M3 LINE L1 -694 5489 4767 267 267 63 5 chr4 99559263 99559469 -84729193 - L1M3 LINE L1 -2792 3354 3137 1954 211 49 5 chr4 99560618 99561026 -84727636 - MSTB LTR MaLR 0 426 1 219 157 0 59 chr4 99561876 99561927 -84726735 + (CATATA)n Simple_repeat Simple_repeat 1 48 0 7905 37 0 3 chr4 99562305 99563299 -84725363 - L1PA4 LINE L1 -2634 3512 2522 15303 41 6 0 chr4 99563299 99565946 -84722716 + L1PA4 LINE L1 3499 6154 -1 23 33 0 0 chr4 99567882 99567912 -84720750 + AT_rich Low_complexity Low_complexity 1 30 0 300 256 12 119 chr4 99568701 99568861 -84719801 + MIR SINE MIR 70 212 -50 2492 74 0 3 chr4 99569488 99569800 -84718862 + AluY SINE Alu 1 311 0 500 379 24 16 chr4 99569865 99570113 -84718549 + MIR SINE MIR 8 257 -5 1910 217 84 135 chr4 99570770 99571303 -84717359 - L1MC3 LINE L1 -10 7807 7248 421 265 7 52 chr4 99571303 99571439 -84717223 - MLT1F1 LTR MaLR -437 130 1 1910 217 84 135 chr4 99571439 99572368 -84716294 - L1MC3 LINE L1 -569 7248 6273 180 0 0 0 chr4 99572368 99572388 -84716274 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1910 217 84 135 chr4 99572388 99572477 -84716185 - L1MC3 LINE L1 -1544 6273 6181 10951 34 0 1 chr4 99572477 99574563 -84714099 - L1PA4 LINE L1 0 6155 4068 1910 217 84 135 chr4 99574563 99575426 -84713236 - L1MC3 LINE L1 -1636 6181 5489 770 164 46 82 chr4 99575447 99575666 -84712996 - Charlie1 DNA MER1_type -1848 913 703 707 122 8 16 chr4 99575701 99575824 -84712838 - L1P LINE L1 -999 5147 5026 568 244 23 0 chr4 99575924 99576055 -84712607 - MLT2B1 LTR ERVL -369 151 18 15013 220 32 13 chr4 99576055 99580359 -84708303 - L1PA15 LINE L1 -312 6504 2069 2132 137 0 19 chr4 99580359 99580673 -84707989 - AluSx SINE Alu -2 310 3 15013 220 32 13 chr4 99580673 99581247 -84707415 - L1PA15 LINE L1 -4747 2069 1507 2314 311 48 21 chr4 99581329 99582176 -84706486 - L1PA15 LINE L1 -5916 871 2 28 29 0 0 chr4 99582427 99582462 -84706200 + AT_rich Low_complexity Low_complexity 1 35 0 279 167 0 0 chr4 99583047 99583089 -84705573 + Alu SINE Alu 1 42 -258 234 349 0 0 chr4 99583356 99583439 -84705223 + (CATATA)n Simple_repeat Simple_repeat 4 86 0 291 271 0 0 chr4 99583440 99583510 -84705152 + L2 LINE L2 3244 3313 0 1920 132 35 0 chr4 99583905 99584192 -84704470 - AluSx SINE Alu -15 297 1 351 163 11 22 chr4 99584231 99584323 -84704339 + C-rich Low_complexity Low_complexity 3 93 0 3263 274 48 8 chr4 99584699 99585998 -84702664 - L1ME LINE L1 -1959 4121 2772 1118 258 78 63 chr4 99586040 99586882 -84701780 - L1ME LINE L1 -3418 2662 1832 1585 301 78 33 chr4 99586971 99588053 -84700609 - L1ME LINE L1 -4981 1089 6 243 202 36 0 chr4 99588171 99588255 -84700407 + (TA)n Simple_repeat Simple_repeat 2 88 0 354 276 29 6 chr4 99588310 99588484 -84700178 + (TA)n Simple_repeat Simple_repeat 1 178 0 919 292 62 29 chr4 99588568 99589161 -84699501 - L1M4 LINE L1 -2019 4127 3515 2256 51 0 7 chr4 99589201 99589507 -84699155 + AluY SINE Alu 10 313 0 3276 181 18 24 chr4 99589567 99590237 -84698425 - L1MB3 LINE L1 -40 6143 5478 489 179 24 8 chr4 99590239 99590362 -84698300 + CT-rich Low_complexity Low_complexity 4 128 0 493 131 12 0 chr4 99791511 99791595 -84497067 + AluS SINE Alu 1 85 -228 316 329 93 14 chr4 99792199 99792339 -84496323 - L2 LINE L2 -1 3312 3162 1205 156 6 0 chr4 99793055 99793234 -84495428 - AluSx SINE Alu -132 180 1 36 77 0 0 chr4 99793274 99793352 -84495310 + AT_rich Low_complexity Low_complexity 1 78 0 6314 75 1 0 chr4 99793750 99794567 -84494095 - L1PA10 LINE L1 0 6168 5351 1404 197 78 44 chr4 99794577 99794938 -84493724 - MLT1B LTR MaLR -17 373 1 22 25 0 25 chr4 99795421 99795432 -84493230 + AT_rich Low_complexity Low_complexity 1 11 -28 769 99 25 0 chr4 99795432 99795553 -84493109 + L1MB3 LINE L1 6052 6175 -8 22 25 0 25 chr4 99795553 99795581 -84493081 + AT_rich Low_complexity Low_complexity 11 39 0 204 111 0 0 chr4 99795697 99795733 -84492929 + (TTTTA)n Simple_repeat Simple_repeat 1 36 0 7406 32 0 0 chr4 99795735 99796841 -84491821 - L1PA4 LINE L1 -26 6129 5024 339 307 71 90 chr4 99797440 99797652 -84491010 + MIR SINE MIR 37 244 -18 557 280 121 8 chr4 99798404 99798678 -84489984 - MLT1G3 LTR MaLR -14 581 187 239 270 73 29 chr4 99799819 99800021 -84488641 + L1ME3 LINE L1 5429 5648 -536 1161 150 45 38 chr4 99800134 99800421 -84488241 - THE1C LTR MaLR 0 375 1 346 329 73 12 chr4 99800429 99800593 -84488069 + L1ME3 LINE L1 5783 5956 -206 26 30 0 0 chr4 99800599 99800632 -84488030 + AT_rich Low_complexity Low_complexity 1 33 0 849 245 89 19 chr4 99800944 99801201 -84487461 - MLT1C LTR MaLR 0 467 193 279 329 25 0 chr4 99801276 99801355 -84487307 - MLT1C LTR MaLR -424 81 1 416 250 58 8 chr4 99802847 99802967 -84485695 + LTR16C LTR ERVL 366 491 0 1624 184 144 8 chr4 99803111 99803486 -84485176 + MSTB LTR MaLR 1 426 0 1499 223 78 43 chr4 99803678 99804166 -84484496 + MLT1D LTR MaLR 1 505 0 336 341 83 33 chr4 99804166 99804442 -84484220 + L2 LINE L2 3024 3313 0 10180 26 2 0 chr4 99804772 99805981 -84482681 - L1P LINE L1 -1148 4998 3788 614 239 18 93 chr4 99806371 99806597 -84482065 - MER63A DNA MER1_type 0 210 2 313 379 17 0 chr4 99806609 99806725 -84481937 - L2 LINE L2 0 3313 3196 2056 290 80 16 chr4 99806730 99807596 -84481066 + L2 LINE L2 2237 3227 -86 1007 159 4 31 chr4 99807728 99807955 -84480707 - L1MA4 LINE L1 -2 6298 6078 625 161 66 15 chr4 99807956 99808093 -84480569 - L1MA4 LINE L1 -310 5995 5852 23 33 0 0 chr4 99808171 99808201 -84480461 + AT_rich Low_complexity Low_complexity 1 30 0 4468 178 25 74 chr4 99808912 99808956 -84479706 + Tigger6a DNA MER2_type 34 79 -1518 2270 71 0 0 chr4 99808956 99809296 -84479366 + AluY SINE Alu 1 340 0 4468 178 25 74 chr4 99809296 99809603 -84479059 + Tigger6a DNA MER2_type 79 399 -1198 737 238 0 0 chr4 99809603 99809750 -84478912 + FRAM SINE Alu 2 148 -18 4468 178 25 74 chr4 99809750 99810500 -84478162 + Tigger6a DNA MER2_type 399 1083 0 297 0 0 0 chr4 99810935 99810968 -84477694 + (CA)n Simple_repeat Simple_repeat 2 34 0 2510 121 62 9 chr4 99810992 99811414 -84477248 - Tigger2 DNA MER2_type -2 2716 2273 430 138 15 0 chr4 99811404 99811469 -84477193 - Tigger2 DNA MER2_type -2649 69 4 * 517 191 46 20 chr4 99811809 99811961 -84476701 - L1M4 LINE L1 -3708 2438 2283 2105 162 58 112 chr4 99812029 99812653 -84476009 - LTR38B LTR ERV1 -20 590 1 335 341 67 0 chr4 99813205 99813369 -84475293 + L1ME LINE L1 5510 5684 -437 824 229 70 53 chr4 99814114 99814455 -84474207 - L1M4 LINE L1 -3513 2633 2287 1878 251 75 32 chr4 99814555 99814594 -84474068 - L1ME1 LINE L1 -19 6958 6922 3464 117 2 8 chr4 99814594 99815108 -84473554 - MER9 LTR ERVK 0 511 1 1878 251 75 32 chr4 99815108 99815720 -84472942 - L1ME1 LINE L1 -55 6922 6279 459 205 82 8 chr4 99815771 99815893 -84472769 - L1MA8 LINE L1 -4 6287 6157 994 220 100 81 chr4 99815923 99816445 -84472217 - L1ME1 LINE L1 -3378 3579 3048 * 1850 261 91 77 chr4 99816436 99817123 -84471539 - L1ME1 LINE L1 -4588 2371 1695 213 39 0 0 chr4 99817123 99817149 -84471513 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1850 261 91 77 chr4 99817149 99817268 -84471394 - L1ME1 LINE L1 -5264 1695 1579 15687 31 0 2 chr4 99817268 99819920 -84468742 - L1PA3 LINE L1 0 6155 3507 1850 261 91 77 chr4 99819920 99820830 -84467832 - L1ME1 LINE L1 -5380 1579 650 321 281 110 2 chr4 99820839 99821011 -84467651 - L1ME1 LINE L1 -6360 495 11 3354 265 47 24 chr4 99821015 99821648 -84467014 - L1M4 LINE L1 -848 5298 4681 1451 164 82 15 chr4 99821648 99821961 -84466701 - AluSx SINE Alu 0 331 1 3354 265 47 24 chr4 99821961 99822709 -84465953 - L1M4 LINE L1 -1465 4681 3883 292 61 45 30 chr4 99822796 99822862 -84465800 + CT-rich Low_complexity Low_complexity 1 67 0 1176 238 119 38 chr4 99822879 99823569 -84465093 - L1M4 LINE L1 -2512 3634 2889 742 259 37 23 chr4 99823571 99824003 -84464659 + MLT1E LTR MaLR 1 532 -61 628 236 6 38 chr4 99824007 99824040 -84464622 + FRAM SINE Alu 1 34 -278 2222 111 32 22 chr4 99824040 99824411 -84464251 + THE1C LTR MaLR 1 375 0 628 236 6 38 chr4 99824411 99824534 -84464128 + FRAM SINE Alu 34 152 -24 23 0 0 0 chr4 99824590 99824613 -84464049 + AT_rich Low_complexity Low_complexity 1 23 0 1350 260 56 4 chr4 99824676 99825142 -84463520 - L1M4 LINE L1 -3255 2891 2402 236 287 10 0 chr4 99826122 99826223 -84462439 + L1MC4 LINE L1 6614 6715 -1327 24 0 0 0 chr4 99826748 99826772 -84461890 + AT_rich Low_complexity Low_complexity 1 24 0 207 342 13 0 chr4 99828006 99828085 -84460577 + L2 LINE L2 3223 3302 -11 180 111 0 0 chr4 99828086 99828113 -84460549 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 6461 102 17 0 chr4 99828793 99830145 -84458517 - L1PA11 LINE L1 0 6174 4809 201 148 19 37 chr4 99830303 99830357 -84458305 + (TTATG)n Simple_repeat Simple_repeat 2 54 0 410 314 21 27 chr4 99831074 99831262 -84457400 + LTR33 LTR ERVL 334 520 -1 2291 94 0 0 chr4 99831831 99832130 -84456532 + AluSc SINE Alu 1 299 -10 204 312 88 48 chr4 99832229 99832354 -84456308 - L3 LINE CR1 -11 1566 1437 193 287 85 11 chr4 99832493 99832587 -84456075 - L3 LINE CR1 -294 1283 1183 11698 144 60 6 chr4 99832887 99834864 -84453798 + Tigger1 DNA MER2_type 1 2083 -335 9947 168 44 29 chr4 99834866 99837447 -84451215 + L1MA4 LINE L1 2967 5957 -343 327 65 0 0 chr4 99837447 99837493 -84451169 + MADE1 DNA Mariner 1 46 -34 9947 168 44 29 chr4 99837493 99837817 -84450845 + L1MA4 LINE L1 5957 6275 -25 825 177 0 49 chr4 99837643 99837817 -84450845 + L1MA4 LINE L1 6102 6266 -34 2231 117 0 3 chr4 99837817 99838115 -84450547 - AluSx SINE Alu -15 297 1 825 177 0 49 chr4 99838115 99838143 -84450519 + L1MA4 LINE L1 6266 6294 -6 1429 113 31 0 chr4 99838191 99838413 -84450249 + Tigger1 DNA MER2_type 2079 2307 -111 1469 168 36 40 chr4 99838683 99838957 -84449705 + AluJo SINE Alu 1 273 -39 366 159 63 0 chr4 99840038 99840101 -84448561 + AluS SINE Alu 224 290 -11 259 210 12 25 chr4 99840213 99840294 -84448368 - L1PB4 LINE L1 -9 6147 6068 1219 187 20 37 chr4 99840311 99840611 -84448051 - L1MA4 LINE L1 -9 6291 5997 2142 117 3 0 chr4 99840655 99840967 -84447695 - AluSx SINE Alu 0 313 1 191 200 164 0 chr4 99841353 99841408 -84447254 + MIR SINE MIR 180 243 -19 28 71 0 0 chr4 99841417 99841473 -84447189 + AT_rich Low_complexity Low_complexity 1 56 0 200 384 109 24 chr4 99841495 99841706 -84446956 + L2 LINE L2 2829 3057 -215 328 377 15 0 chr4 99842309 99842439 -84446223 + L2 LINE L2 3141 3272 0 2020 143 0 0 chr4 99842987 99843280 -84445382 - AluSx SINE Alu -15 297 5 1644 191 77 20 chr4 99843524 99843964 -84444698 - MLT1C LTR MaLR 0 467 3 2281 90 7 3 chr4 99843977 99844277 -84444385 + AluSx SINE Alu 1 301 -11 308 224 63 127 chr4 99844460 99844665 -84443997 + L2 LINE L2 3122 3313 0 348 353 19 6 chr4 99845438 99845594 -84443068 + MIR SINE MIR 48 205 -57 1381 173 109 6 chr4 99845792 99845932 -84442730 - L1MA10 LINE L1 -7 6323 6199 212 59 29 0 chr4 99845932 99845966 -84442696 + (TG)n Simple_repeat Simple_repeat 2 36 0 1381 173 109 6 chr4 99845966 99846184 -84442478 - L1MA10 LINE L1 -131 6199 5906 240 61 0 0 chr4 99846181 99846214 -84442448 + L1MA10 LINE L1 5874 5906 -274 * 2158 142 26 0 chr4 99848007 99848317 -84440345 - LTR18A LTR ERVL -39 318 1 7241 178 32 0 chr4 99848318 99849521 -84439141 - HERVL18 LTR ERVL 0 6047 4806 2584 103 3 0 chr4 99849521 99849870 -84438792 - THE1A LTR MaLR 0 355 6 10741 148 11 1 chr4 99849870 99851488 -84437174 - HERVL18 LTR ERVL -1237 4810 3177 1009 275 142 48 chr4 99852419 99852901 -84435761 + L1MCa LINE L1 64 482 -5563 25 31 0 0 chr4 99852959 99852991 -84435671 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr4 99853011 99853041 -84435621 + AT_rich Low_complexity Low_complexity 1 30 0 773 172 93 179 chr4 99853224 99853643 -84435019 - LOR1a LTR ERV1 0 497 115 466 221 11 0 chr4 99853670 99853765 -84434897 - LOR1a-int LTR ERV1 0 8120 8025 3118 198 50 19 chr4 99853768 99854543 -84434119 - LOR1a-int LTR ERV1 -422 7698 4773 896 167 18 24 chr4 99854546 99854714 -84433948 - MER49 LTR ERV1 -753 170 4 1472 169 93 4 chr4 99854717 99855041 -84433621 - MER49-int LTR ERV1 -1 7097 6381 1513 152 89 11 chr4 99855064 99855393 -84433269 - MER49-int LTR ERV1 -599 6159 3777 496 167 44 26 chr4 99855384 99855498 -84433164 - LOR1a-int LTR ERV1 -2189 4142 4027 * 972 128 45 0 chr4 99855687 99855843 -84432819 - LOR1a-int LTR ERV1 -4342 3778 3616 12907 128 80 60 chr4 99855850 99856226 -84432436 - LOR1a-int LTR ERV1 -5237 2883 2516 3954 39 8 0 chr4 99856226 99856711 -84431951 - L1PA3 LINE L1 0 6155 5667 12907 128 80 60 chr4 99856711 99856752 -84431910 - LOR1a-int LTR ERV1 -5604 2516 2477 279 0 0 0 chr4 99856752 99856783 -84431879 + (CA)n Simple_repeat Simple_repeat 2 32 0 12907 128 80 60 chr4 99856783 99858643 -84430019 - LOR1a-int LTR ERV1 -5643 2477 495 281 178 0 0 chr4 99858643 99858688 -84429974 - 5S rRNA rRNA -70 51 7 12907 128 80 60 chr4 99858688 99859107 -84429555 - LOR1a-int LTR ERV1 -7625 495 86 25 31 0 0 chr4 99859684 99859716 -84428946 + AT_rich Low_complexity Low_complexity 1 32 0 3028 61 8 2 chr4 99859801 99860195 -84428467 - L1PA7 LINE L1 -1 6153 5758 2605 49 6 0 chr4 99860195 99860519 -84428143 + L1P3 LINE L1 5337 5662 -492 21 0 0 0 chr4 99860793 99860814 -84427848 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 99861367 99861389 -84427273 + AT_rich Low_complexity Low_complexity 1 22 0 1182 191 9 123 chr4 99861834 99862174 -84426488 + AluJo SINE Alu 2 302 0 343 262 90 26 chr4 99862596 99862863 -84425799 - L1MC5 LINE L1 -195 7766 7483 338 294 134 48 chr4 99863250 99863706 -84424956 - HAL1b LINE L1 -800 548 54 262 179 125 0 chr4 99864081 99864137 -84424525 - ERVL LTR ERVL -1197 4567 4505 447 316 86 60 chr4 99865068 99865798 -84422864 - ERVL LTR ERVL -2016 3469 2721 424 296 17 40 chr4 99866250 99866426 -84422236 - MER21-int LTR ERV1 -2314 1877 1706 26 82 0 0 chr4 99868435 99868496 -84420166 + AT_rich Low_complexity Low_complexity 1 61 0 360 304 159 0 chr4 99868630 99868768 -84419894 + MIR SINE MIR 2 161 -101 1675 103 0 0 chr4 99868871 99869103 -84419559 - LOR1a LTR ERV1 -265 232 1 450 112 4 0 chr4 99869274 99869343 -84419319 - THE1A LTR MaLR 0 355 294 26 30 0 0 chr4 99869824 99869857 -84418805 + AT_rich Low_complexity Low_complexity 1 33 0 1152 150 33 0 chr4 99870333 99870513 -84418149 - AluSg SINE Alu -2 310 125 268 271 47 0 chr4 99870549 99870634 -84418028 - L1MC4 LINE L1 -1339 6703 6615 236 272 0 33 chr4 99870629 99870721 -84417941 - L1MC4 LINE L1 -1339 6703 6615 * 357 148 37 0 chr4 99870723 99870804 -84417858 + (TA)n Simple_repeat Simple_repeat 1 84 0 755 88 132 0 chr4 99870804 99870918 -84417744 - AluSg SINE Alu -181 129 1 195 42 0 0 chr4 99872266 99872290 -84416372 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 532 297 41 38 chr4 99872322 99872689 -84415973 - HAL1b LINE L1 -755 593 226 777 238 61 39 chr4 99872712 99872943 -84415719 - L1M4 LINE L1 -6300 242 7 26 0 0 0 chr4 99873155 99873181 -84415481 + AT_rich Low_complexity Low_complexity 1 26 0 1943 182 93 19 chr4 99873767 99874184 -84414478 + MSTB2 LTR MaLR 10 457 0 604 290 55 47 chr4 99874685 99874940 -84413722 + MIR SINE MIR 6 262 0 1948 211 11 61 chr4 99875793 99876233 -84412429 + MLT1C-int LTR MaLR 954 1371 0 1611 213 40 67 chr4 99876234 99876713 -84411949 + MLT1C LTR MaLR 2 467 0 226 185 49 74 chr4 99876715 99876796 -84411866 - L2 LINE L2 -1340 1974 1896 209 381 0 8 chr4 99877154 99877280 -84411382 - L2 LINE L2 -1876 1438 1314 624 105 79 0 chr4 99878588 99878702 -84409960 - L1MA5A LINE L1 0 6297 6175 279 0 0 0 chr4 99878803 99878834 -84409828 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1481 225 5 30 chr4 99878835 99879208 -84409454 + L1M4 LINE L1 3746 4109 -2037 11079 55 11 13 chr4 99879215 99880604 -84408058 - SVA Other Other 0 1386 1 216 398 48 0 chr4 99880681 99880784 -84407878 + L2 LINE L2 3188 3295 -18 1435 138 29 112 chr4 99881636 99881976 -84406686 + AluJo SINE Alu 1 312 0 21 0 0 0 chr4 99885981 99886002 -84402660 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chr4 99887011 99887052 -84401610 + (CA)n Simple_repeat Simple_repeat 2 42 0 237 276 153 31 chr4 99887149 99887247 -84401415 - MIR SINE MIR -147 115 6 24 0 0 0 chr4 99887720 99887744 -84400918 + AT_rich Low_complexity Low_complexity 1 24 0 2439 130 43 10 chr4 99887778 99888192 -84400470 - MSTA LTR MaLR 0 428 1 389 354 157 3 chr4 99889291 99889655 -84399007 + L2 LINE L2 1789 2208 -1106 14835 42 12 1 chr4 99889729 99892335 -84396327 - L1PA4 LINE L1 -8 6147 3518 24155 80 6 2 chr4 99892439 99895684 -84392978 - L1PA4 LINE L1 -2879 3267 11 268 176 154 22 chr4 99896618 99896709 -84391953 + L1MC4 LINE L1 6550 6708 -1133 542 322 78 30 chr4 99896813 99897338 -84391324 + L2 LINE L2 2146 2787 -527 355 352 58 56 chr4 99897377 99897823 -84390839 + L2 LINE L2 2867 3313 0 248 310 69 28 chr4 99898044 99898260 -84390402 + L1ME LINE L1 5608 5832 -289 1815 182 32 16 chr4 99898461 99898830 -84389832 + THE1C LTR MaLR 1 375 0 1155 151 0 0 chr4 99899075 99899260 -84389402 - AluY SINE Alu 0 311 127 30 27 0 0 chr4 99900179 99900216 -84388446 + AT_rich Low_complexity Low_complexity 1 37 0 185 0 40 0 chr4 99900555 99900580 -84388082 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chr4 99900652 99900680 -84387982 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr4 99900821 99900850 -84387812 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7476 29 2 0 chr4 99903090 99904299 -84384363 - L1PA4 LINE L1 -3 6152 4942 24 0 0 0 chr4 99904794 99904818 -84383844 + AT_rich Low_complexity Low_complexity 1 24 0 8234 189 28 27 chr4 99905133 99906749 -84381913 + L1MA3 LINE L1 17 1633 -5932 420 37 102 20 chr4 99906752 99906988 -84381674 + (TA)n Simple_repeat Simple_repeat 1 255 0 679 55 33 44 chr4 99907002 99907183 -84381479 + (TA)n Simple_repeat Simple_repeat 2 180 0 212 97 32 65 chr4 99907194 99907256 -84381406 + T-rich Low_complexity Low_complexity 3 62 0 352 122 24 0 chr4 99907256 99907338 -84381324 + (TA)n Simple_repeat Simple_repeat 1 84 0 1025 55 0 0 chr4 99907338 99907465 -84381197 - L1PA5 LINE L1 -9 6145 6019 5202 139 32 11 chr4 99907465 99908326 -84380336 + L1MA3 LINE L1 1627 2506 -5059 6326 122 35 7 chr4 99908336 99909625 -84379037 + L1MA3 LINE L1 6395 7718 -6 23 33 0 0 chr4 99911323 99911353 -84377309 + AT_rich Low_complexity Low_complexity 1 30 0 361 371 72 8 chr4 99911469 99911706 -84376956 + L3 LINE CR1 408 659 -918 309 252 34 68 chr4 99914112 99914259 -84374403 - MIR SINE MIR -51 211 70 243 0 0 0 chr4 99914345 99914372 -84374290 + (TC)n Simple_repeat Simple_repeat 2 28 0 235 162 0 0 chr4 99914372 99914409 -84374253 - Alu SINE Alu -14 285 249 924 192 24 29 chr4 99914473 99914681 -84373981 + MER3 DNA MER1_type 1 207 -2 2968 124 15 25 chr4 99914842 99915368 -84373294 - L1MA4 LINE L1 -10 6290 5770 5179 110 18 63 chr4 99915489 99916441 -84372221 - L1MA7 LINE L1 -5 6286 5378 3261 173 11 23 chr4 99916441 99916937 -84371725 + L1 LINE L1 4697 5183 -983 1688 87 13 9 chr4 99916937 99917166 -84371496 + MER30 DNA MER1_type 1 230 0 3261 173 11 23 chr4 99917166 99917405 -84371257 + L1 LINE L1 5183 5423 -743 23 33 0 0 chr4 99917669 99917699 -84370963 + AT_rich Low_complexity Low_complexity 1 30 0 700 317 75 4 chr4 99917874 99918114 -84370548 - MIR SINE MIR -4 258 2 18868 30 1 1 chr4 99918198 99921257 -84367405 - L1PA4 LINE L1 -1 6154 3096 194 146 0 24 chr4 99921807 99921848 -84366814 + (GGGAGA)n Simple_repeat Simple_repeat 3 42 0 254 234 0 0 chr4 99922065 99922112 -84366550 - L2 LINE L2 -8 3264 3218 1770 155 13 7 chr4 99924073 99924383 -84364279 + L1PB1 LINE L1 5837 6148 -3 24 0 0 0 chr4 99924383 99924407 -84364255 + AT_rich Low_complexity Low_complexity 1 24 0 206 284 137 0 chr4 99924554 99924656 -84364006 - MIR SINE MIR -38 224 109 25 0 0 0 chr4 99924760 99924785 -84363877 + AT_rich Low_complexity Low_complexity 1 25 0 2866 87 0 22 chr4 99925119 99925532 -84363130 - L1PA8A LINE L1 0 6131 5728 212 262 0 0 chr4 99925970 99926012 -84362650 + L2 LINE L2 3186 3227 -45 * 318 335 102 18 chr4 99926006 99926173 -84362489 - MIR3 SINE MIR -17 191 11 23 0 0 0 chr4 99926322 99926345 -84362317 + AT_rich Low_complexity Low_complexity 1 23 0 22280 57 7 18 chr4 99926468 99930241 -84358421 - L1PA6 LINE L1 -6 6148 2405 1577 172 3 41 chr4 99930245 99930256 -84358406 - AluSx SINE Alu 0 312 302 184 42 0 0 chr4 99930256 99930280 -84358382 + (TTTA)n Simple_repeat Simple_repeat 2 152 0 1577 172 3 41 chr4 99930280 99930558 -84358104 - AluSx SINE Alu -10 302 11 2079 129 0 28 chr4 99930591 99930909 -84357753 - AluSg SINE Alu -1 309 1 1976 177 26 8 chr4 99931676 99932054 -84356608 - MLT1B LTR MaLR -5 385 1 234 326 0 12 chr4 99932767 99932853 -84355809 + CT-rich Low_complexity Low_complexity 2 86 0 21 36 0 0 chr4 99934637 99934665 -84353997 + AT_rich Low_complexity Low_complexity 1 28 0 1844 69 9 0 chr4 99935121 99935353 -84353309 - AluY SINE Alu -77 234 1 501 312 133 62 chr4 99935497 99936413 -84352249 + L2 LINE L2 1776 2756 -558 4711 155 44 19 chr4 99936898 99937908 -84350754 - L1PA16 LINE L1 0 6166 5134 2109 245 6 2 chr4 99937937 99938313 -84350349 + L1P LINE L1 3807 4187 -1959 2222 103 7 0 chr4 99938313 99938603 -84350059 + AluSx SINE Alu 1 292 -20 2109 245 6 2 chr4 99938603 99938707 -84349955 + L1P LINE L1 4187 4289 -1857 4214 212 11 11 chr4 99938712 99939696 -84348966 + L1 LINE L1 4152 5135 -1011 329 291 67 48 chr4 99940438 99940603 -84348059 - L1ME LINE L1 -5178 1769 1602 339 246 27 9 chr4 99940614 99940724 -84347938 - L1ME LINE L1 -5417 1442 1331 21 36 0 0 chr4 99940811 99940839 -84347823 + AT_rich Low_complexity Low_complexity 1 28 0 1705 188 0 3 chr4 99940839 99941126 -84347536 - AluJb SINE Alu -26 286 1 286 241 28 35 chr4 99941302 99941447 -84347215 + (TA)n Simple_repeat Simple_repeat 2 145 0 198 71 0 0 chr4 99941465 99941493 -84347169 + (CA)n Simple_repeat Simple_repeat 2 29 0 303 28 0 0 chr4 99942356 99942392 -84346270 + (TC)n Simple_repeat Simple_repeat 1 36 0 207 0 0 0 chr4 99942391 99942414 -84346248 + (CA)n Simple_repeat Simple_repeat 1 23 0 * 2595 45 0 7 chr4 99942598 99942906 -84345756 + AluY SINE Alu 4 309 -2 241 256 12 49 chr4 99943099 99943181 -84345481 + MIR SINE MIR 60 138 -70 469 271 81 8 chr4 99943684 99943868 -84344794 + MLT1B LTR MaLR 1 187 -187 258 211 0 18 chr4 99943868 99943925 -84344737 + CT-rich Low_complexity Low_complexity 1 56 0 799 241 18 0 chr4 99943950 99944120 -84344542 + MLT1B LTR MaLR 207 379 -11 1613 109 4 38 chr4 99944170 99944409 -84344253 + AluSg SINE Alu 7 237 -73 301 295 208 38 chr4 99944417 99944600 -84344062 - MIR SINE MIR -48 214 1 265 291 44 73 chr4 99944885 99944983 -84343679 - L2 LINE L2 0 3313 3214 1964 117 23 13 chr4 99944983 99945291 -84343371 + AluSx SINE Alu 1 311 -1 265 291 44 73 chr4 99945291 99945398 -84343264 - L2 LINE L2 -99 3214 3114 21 36 0 0 chr4 99945919 99945947 -84342715 + AT_rich Low_complexity Low_complexity 1 28 0 2234 101 0 7 chr4 99946278 99946574 -84342088 + AluSg SINE Alu 1 294 -16 670 318 113 18 chr4 99946774 99947154 -84341508 - L2 LINE L2 -5 3308 2893 23 0 0 0 chr4 99947280 99947303 -84341359 + AT_rich Low_complexity Low_complexity 1 23 0 341 355 74 0 chr4 99948185 99948306 -84340356 - L2 LINE L2 -2 3270 3141 222 37 0 0 chr4 99952755 99952782 -84335880 + (CA)n Simple_repeat Simple_repeat 2 28 0 314 290 105 40 chr4 99955033 99955233 -84333429 + MIR SINE MIR 40 252 -10 927 320 42 33 chr4 99955249 99955660 -84333002 + L2 LINE L2 2648 3074 -239 1751 236 45 23 chr4 99955769 99956800 -84331862 + L1MB7 LINE L1 1743 2889 -3493 268 167 0 0 chr4 99956800 99956842 -84331820 - Tigger7 DNA MER2_type -297 42 1 * 427 167 90 0 chr4 99956842 99956911 -84331751 + MLT2B1 LTR ERVL 354 429 -91 3265 199 23 41 chr4 99956921 99957710 -84330952 + L1MB7 LINE L1 5646 6420 0 27 0 0 0 chr4 99958072 99958099 -84330563 + AT_rich Low_complexity Low_complexity 1 27 0 1640 167 4 11 chr4 99958122 99958385 -84330277 - AluJo SINE Alu -35 277 17 621 310 57 81 chr4 99958412 99958870 -84329792 - LTR67 LTR ERVL -106 451 5 548 357 129 25 chr4 99959742 99960255 -84328407 - L2 LINE L2 -384 2930 2365 182 333 0 13 chr4 99960398 99960476 -84328186 + MIR SINE MIR 176 252 -10 5497 165 17 19 chr4 99960552 99962515 -84326147 + L1MA6 LINE L1 4338 6300 0 183 262 33 16 chr4 99963033 99963094 -84325568 - L2 LINE L2 0 3313 3252 485 321 168 20 chr4 99963299 99963431 -84325231 + L2 LINE L2 1645 1756 -1558 3138 148 18 0 chr4 99963431 99963939 -84324723 - L1PA16 LINE L1 -16 6150 5634 485 321 168 20 chr4 99963939 99964307 -84324355 + L2 LINE L2 1756 2219 -1095 53 30 0 0 chr4 99964477 99964544 -84324118 + AT_rich Low_complexity Low_complexity 1 67 0 849 39 0 0 chr4 99964839 99964941 -84323721 - L1PA3 LINE L1 -2242 3904 3803 12073 31 8 1 chr4 99964941 99967160 -84321502 + L1PA3 LINE L1 3927 6155 0 6543 83 12 1 chr4 99967174 99968127 -84320535 - L1PA16 LINE L1 -734 5420 4459 3050 41 0 0 chr4 99968127 99968492 -84320170 + L1PA7 LINE L1 5465 5829 -325 24245 24 4 0 chr4 99968493 99970765 -84317897 + L1PA4 LINE L1 49 2303 -3852 24245 39 3 0 chr4 99970765 99974530 -84314132 + L1PA4 LINE L1 2386 6152 -3 24245 24 4 0 chr4 99974530 99974552 -84314110 + L1PA4 LINE L1 2303 6152 -3 6224 31 4 0 chr4 99974639 99975381 -84313281 + L1PA4 LINE L1 5408 6152 -3 180 0 0 0 chr4 99975413 99975433 -84313229 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 6415 25 0 0 chr4 99975490 99976238 -84312424 + L1PA3 LINE L1 5408 6155 0 860 236 58 27 chr4 100177344 100177636 -84111026 - L1MEc LINE L1 -2502 4455 4155 17217 194 33 91 chr4 100177677 100179834 -84108828 - L1MB8 LINE L1 -61 6117 3837 1486 208 3 23 chr4 100179834 100180137 -84108525 - AluJo SINE Alu -15 297 1 17217 194 33 91 chr4 100180137 100184155 -84104507 - L1MB8 LINE L1 -2341 3837 297 699 80 0 0 chr4 100184138 100184226 -84104436 - L1P3 LINE L1 -6363 98 11 * 382 315 19 0 chr4 100184206 100184368 -84104294 - L1MEc LINE L1 -3750 3207 3043 * 2740 163 10 2 chr4 100184361 100184851 -84103811 - L1MA7 LINE L1 -429 5862 5369 1829 188 10 34 chr4 100184851 100185259 -84103403 + L1MA7 LINE L1 5885 6290 -1 624 204 210 6 chr4 100185286 100185448 -84103214 + MER58 DNA MER1_type 2 196 -2224 486 296 42 34 chr4 100185610 100185992 -84102670 - L1MEc LINE L1 -4091 3047 2663 621 289 93 15 chr4 100186410 100186776 -84101886 - L1MEc LINE L1 -4596 2472 1959 2506 180 40 72 chr4 100186810 100187378 -84101284 - MLT2B3 LTR ERVL 0 554 5 1544 292 72 23 chr4 100187383 100187762 -84100900 - L1MEc LINE L1 -6078 781 367 189 74 0 0 chr4 100187762 100187789 -84100873 + (TG)n Simple_repeat Simple_repeat 1 27 0 1544 292 72 23 chr4 100187789 100187937 -84100725 - L1MEc LINE L1 -6492 367 228 552 265 17 0 chr4 100187982 100188099 -84100563 - MIR SINE MIR -142 120 2 207 220 0 0 chr4 100188943 100188993 -84099669 + CT-rich Low_complexity Low_complexity 3 52 0 1857 219 7 5 chr4 100189184 100189609 -84099053 + L1P LINE L1 4455 4880 -1266 7888 11 0 0 chr4 100190428 100191819 -84096843 - L1PA2 LINE L1 0 6155 4765 248 281 35 18 chr4 100191916 100192030 -84096632 + L1MEc LINE L1 1905 2020 -4376 438 300 125 0 chr4 100192050 100192330 -84096332 + L1MEc LINE L1 2101 2415 -3981 887 266 140 16 chr4 100192366 100192809 -84095853 + L1M4 LINE L1 3908 4405 -1741 546 252 20 14 chr4 100192828 100192975 -84095687 + L1M4 LINE L1 23 170 -6372 311 189 0 14 chr4 100194588 100194662 -84094000 + (TA)n Simple_repeat Simple_repeat 2 74 0 1020 199 99 78 chr4 100194978 100195360 -84093302 - Charlie4a DNA MER1_type 0 508 119 1144 250 18 14 chr4 100195414 100195463 -84093199 - L1MB8 LINE L1 -117 6061 6013 1507 241 51 13 chr4 100195463 100196254 -84092408 - L1MC4 LINE L1 -449 5735 5147 266 215 63 0 chr4 100196258 100196337 -84092325 - L1MC4 LINE L1 -1060 5086 5003 2159 103 13 0 chr4 100197064 100197364 -84091298 - AluSx SINE Alu -6 306 3 1388 258 84 93 chr4 100197787 100198003 -84090659 + MLT1E LTR MaLR 3 219 -374 1345 50 0 39 chr4 100198003 100198185 -84090477 - L1PA3 LINE L1 0 6155 5981 1388 258 84 93 chr4 100198185 100198562 -84090100 + MLT1E LTR MaLR 219 591 -2 789 300 13 4 chr4 100199615 100199845 -84088817 + MIR SINE MIR 6 237 -25 202 28 28 28 chr4 100199874 100199910 -84088752 + (TTA)n Simple_repeat Simple_repeat 3 38 0 38689 40 0 1 chr4 100199910 100205430 -84083232 - L1PA4 LINE L1 -18 6137 623 655 134 0 0 chr4 100205428 100205525 -84083137 - L1PA4 LINE L1 -6048 98 2 * 2107 130 0 0 chr4 100205602 100205894 -84082768 - AluSc SINE Alu -17 292 1 6096 103 14 6 chr4 100205929 100207382 -84081280 - L1PA11 LINE L1 -17 6157 4701 2736 10 3 0 chr4 100207864 100208169 -84080493 + AluYa5 SINE Alu 1 306 -5 2098 124 3 3 chr4 100208178 100208485 -84080177 + AluSx SINE Alu 1 307 -5 219 327 30 20 chr4 100209048 100209149 -84079513 - MIR SINE MIR -4 258 157 249 274 53 42 chr4 100209695 100209790 -84078872 + MIR SINE MIR 80 175 -87 378 42 0 0 chr4 100210200 100210248 -84078414 + (TG)n Simple_repeat Simple_repeat 2 49 0 548 289 47 55 chr4 100210268 100210797 -84077865 - L1MC5 LINE L1 -48 7913 7389 2630 26 3 3 chr4 100210905 100211215 -84077447 + AluY SINE Alu 2 311 0 374 333 81 4 chr4 100211752 100211986 -84076676 + MIR SINE MIR 1 252 -10 860 313 97 28 chr4 100213495 100213961 -84074701 + MLT1J LTR MaLR 3 500 -11 270 0 0 0 chr4 100214106 100214136 -84074526 + (TA)n Simple_repeat Simple_repeat 2 31 0 2070 116 35 27 chr4 100214235 100214607 -84074055 + THE1C LTR MaLR 1 375 0 240 280 102 70 chr4 100214844 100215001 -84073661 + MER5B DNA MER1_type 17 178 0 821 240 236 66 chr4 100217610 100218119 -84070543 - MLT1G LTR MaLR -41 549 6 10161 120 7 1 chr4 100219308 100220928 -84067734 + L1PA8 LINE L1 2334 3963 -2183 4254 55 14 65 chr4 100220928 100221500 -84067162 + MER11A LTR ERVK 1 601 -665 7896 77 5 18 chr4 100221500 100222585 -84066077 - MER11C LTR ERVK 0 1071 1 4254 55 14 65 chr4 100222585 100223107 -84065555 + MER11A LTR ERVK 601 1262 -4 9893 95 13 2 chr4 100223112 100225330 -84063332 + L1PA8 LINE L1 3958 6197 0 195 100 0 0 chr4 100225380 100225410 -84063252 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 49 0 0 0 chr4 100225455 100225504 -84063158 + AT_rich Low_complexity Low_complexity 1 49 0 38 51 0 0 chr4 100226147 100226206 -84062456 + AT_rich Low_complexity Low_complexity 1 59 0 22 70 0 0 chr4 100226322 100226365 -84062297 + AT_rich Low_complexity Low_complexity 1 43 0 399 340 107 27 chr4 100226811 100227111 -84061551 + L2 LINE L2 2194 2517 -797 466 361 62 30 chr4 100228020 100228458 -84060204 + ERVL LTR ERVL 3176 3627 -2137 776 98 8 0 chr4 100229241 100229364 -84059298 - L1MA4 LINE L1 -11 6289 6166 412 292 40 40 chr4 100229516 100229718 -84058944 + ERVL LTR ERVL 4115 4316 -1338 498 146 0 0 chr4 100229947 100230043 -84058619 + (TG)n Simple_repeat Simple_repeat 1 96 0 26 64 0 0 chr4 100230185 100230232 -84058430 + AT_rich Low_complexity Low_complexity 1 47 0 29 70 0 0 chr4 100230779 100230836 -84057826 + AT_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr4 100231149 100231170 -84057492 + AT_rich Low_complexity Low_complexity 1 21 0 207 69 0 0 chr4 100232356 100232385 -84056277 + (TC)n Simple_repeat Simple_repeat 2 30 0 288 0 0 0 chr4 100232394 100232426 -84056236 + (TG)n Simple_repeat Simple_repeat 1 32 0 34 42 0 0 chr4 100232437 100232485 -84056177 + AT_rich Low_complexity Low_complexity 1 48 0 3405 121 24 65 chr4 100233317 100233792 -84054870 + MER4B LTR ERV1 2 446 -164 1621 182 0 0 chr4 100233792 100234050 -84054612 + AluJb SINE Alu 1 258 -54 3405 121 24 65 chr4 100234050 100234202 -84054460 + MER4B LTR ERV1 446 603 -7 2164 144 84 22 chr4 100234206 100234609 -84054053 + MSTA LTR MaLR 1 428 0 276 213 80 0 chr4 100235039 100235114 -84053548 + L1ME LINE L1 5741 5821 -349 25 0 0 0 chr4 100235447 100235472 -84053190 + AT_rich Low_complexity Low_complexity 1 25 0 1632 147 7 11 chr4 100235669 100235911 -84052751 - L1M2 LINE L1 -577 5735 5493 1956 171 94 5 chr4 100235911 100236304 -84052358 - MSTA LTR MaLR 0 428 1 1632 147 7 11 chr4 100236304 100236346 -84052316 - L1M2 LINE L1 -819 5493 5452 1429 244 44 37 chr4 100236336 100236906 -84051756 - L1M4 LINE L1 -1421 4725 4152 * 16014 171 14 6 chr4 100236916 100240783 -84047879 - L1PA13 LINE L1 0 7601 3703 5417 167 35 8 chr4 100240783 100240990 -84047672 - L1PA13 LINE L1 -6626 955 755 189 0 0 0 chr4 100240990 100241011 -84047651 + (CTGTG)n Simple_repeat Simple_repeat 1 21 0 5417 167 35 8 chr4 100241011 100241732 -84046930 - L1PA13 LINE L1 -6826 755 1 216 273 0 0 chr4 100243456 100243548 -84045114 + (TA)n Simple_repeat Simple_repeat 1 92 0 24 32 0 0 chr4 100243620 100243651 -84045011 + AT_rich Low_complexity Low_complexity 1 31 0 31 0 0 0 chr4 100244197 100244228 -84044434 + AT_rich Low_complexity Low_complexity 1 31 0 182 37 37 0 chr4 100244466 100244493 -84044169 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 296 357 14 34 chr4 100244540 100244822 -84043840 - L2 LINE L2 -232 3081 2741 1143 156 4 66 chr4 100244990 100245233 -84043429 - L1PA16 LINE L1 -16 6150 5923 396 70 14 28 chr4 100245308 100245379 -84043283 + (GAAA)n Simple_repeat Simple_repeat 2 71 0 264 265 60 24 chr4 100245428 100245511 -84043151 - L2 LINE L2 -1114 2200 2115 2276 95 3 0 chr4 100246793 100247087 -84041575 + AluSc SINE Alu 1 295 -14 714 178 16 0 chr4 100247319 100247448 -84041214 - L1PA16 LINE L1 -6 6160 6030 1606 199 49 30 chr4 100247994 100248360 -84040302 - MLT1B LTR MaLR -10 380 8 588 247 18 12 chr4 100248361 100248527 -84040135 - MER3 DNA MER1_type -80 129 10 853 277 86 14 chr4 100248613 100249057 -84039605 - L1M4 LINE L1 -3390 2992 2493 1620 124 20 24 chr4 100249057 100249355 -84039307 - L1MA4 LINE L1 -4 6296 6000 853 277 86 14 chr4 100249355 100249477 -84039185 - L1M4 LINE L1 -3889 2493 2381 2262 143 38 12 chr4 100249507 100249933 -84038729 - L1MA3 LINE L1 -12 6293 5857 182 343 101 24 chr4 100251009 100251257 -84037405 + L2 LINE L2 2638 2904 -410 6876 67 8 0 chr4 100251357 100252711 -84035951 + L1PA7 LINE L1 4789 6154 0 23 54 0 0 chr4 100252977 100253014 -84035648 + AT_rich Low_complexity Low_complexity 1 37 0 236 365 26 77 chr4 100253189 100253345 -84035317 - L2 LINE L2 -53 3219 3072 1898 161 3 0 chr4 100253479 100253778 -84034884 - AluSx SINE Alu -12 300 1 238 259 96 82 chr4 100253929 100254064 -84034598 + MIR SINE MIR 82 218 -44 279 114 0 0 chr4 100254248 100254292 -84034370 + (TG)n Simple_repeat Simple_repeat 2 45 0 270 191 0 0 chr4 100254939 100254986 -84033676 + MLT2C1 LTR ERVL 351 397 0 27 62 0 0 chr4 100255667 100255715 -84032947 + AT_rich Low_complexity Low_complexity 1 48 0 2115 127 39 23 chr4 100255744 100256129 -84032533 - L1MA2 LINE L1 0 6304 5914 3608 104 0 6 chr4 100256129 100256649 -84032013 + L1MA2 LINE L1 5388 5904 -401 23 0 0 0 chr4 100256668 100256691 -84031971 + AT_rich Low_complexity Low_complexity 1 23 0 207 156 0 0 chr4 100257198 100257230 -84031432 + (TG)n Simple_repeat Simple_repeat 2 33 0 253 272 26 44 chr4 100258036 100258150 -84030512 - Zaphod DNA AcHobo -3556 475 364 1151 163 29 12 chr4 100258160 100258405 -84030257 - L1MA4 LINE L1 -12 6288 6040 977 168 66 10 chr4 100258947 100259143 -84029519 + L1MC1 LINE L1 6122 6328 -5 665 188 0 39 chr4 100260360 100260514 -84028148 - L1PB4 LINE L1 -9 6147 6000 1051 245 98 39 chr4 100260514 100260902 -84027760 - L1MA4 LINE L1 -35 6265 5855 375 41 0 0 chr4 100261470 100261519 -84027143 + (CA)n Simple_repeat Simple_repeat 2 50 0 606 116 411 0 chr4 100261586 100261732 -84026930 + THE1C LTR MaLR 1 206 -169 2120 56 45 0 chr4 100261814 100262082 -84026580 + AluY SINE Alu 21 300 -11 586 274 8 66 chr4 100262283 100262524 -84026138 + L1M4 LINE L1 3646 3872 -2274 233 109 22 0 chr4 100262528 100262574 -84026088 - LTR66 LTR ERVL -166 444 398 344 229 37 9 chr4 100262582 100262691 -84025971 + L1M4 LINE L1 3899 4010 -2136 259 368 74 21 chr4 100262769 100263011 -84025651 + MIR SINE MIR 3 257 -5 6536 27 1 0 chr4 100263014 100263794 -84024868 + L1PA4 LINE L1 5374 6154 -1 1929 127 18 0 chr4 100265203 100265512 -84023150 + AluSx SINE Alu 1 314 0 1802 168 0 7 chr4 100265575 100265861 -84022801 + AluJo SINE Alu 5 288 -24 31 0 0 0 chr4 100265866 100265897 -84022765 + AT_rich Low_complexity Low_complexity 1 31 0 384 22 0 0 chr4 100266711 100266756 -84021906 + (CA)n Simple_repeat Simple_repeat 2 46 0 23 0 0 0 chr4 100266774 100266797 -84021865 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chr4 100268165 100268200 -84020462 + AT_rich Low_complexity Low_complexity 1 35 0 1709 210 12 0 chr4 100268408 100268751 -84019911 - L1P LINE L1 -1282 4864 4518 2358 183 47 6 chr4 100268751 100269237 -84019425 + L1P LINE L1 4845 5350 -796 832 282 8 0 chr4 100269241 100269503 -84019159 + L1PBa LINE L1 915 1178 -5685 6124 193 10 14 chr4 100269576 100271031 -84017631 + L1PB3 LINE L1 660 1717 -5146 11297 211 88 17 chr4 100271035 100273327 -84015335 + L1PB3 LINE L1 1679 3807 -3063 2460 48 0 3 chr4 100273327 100273621 -84015041 + AluY SINE Alu 1 293 -18 11297 211 88 17 chr4 100273621 100275545 -84013117 + L1PB3 LINE L1 3807 6301 -569 2272 121 22 25 chr4 100275545 100275910 -84012752 - THE1B LTR MaLR 0 364 1 11297 211 88 17 chr4 100275910 100276523 -84012139 + L1PB3 LINE L1 6301 6869 -1 21 36 0 0 chr4 100276787 100276815 -84011847 + AT_rich Low_complexity Low_complexity 1 28 0 2114 119 0 0 chr4 100277016 100277310 -84011352 + AluSc SINE Alu 1 294 -15 22 70 0 0 chr4 100279364 100279407 -84009255 + AT_rich Low_complexity Low_complexity 1 43 0 2081 87 3 29 chr4 100279471 100279783 -84008879 - AluY SINE Alu -7 304 1 26 30 0 0 chr4 100280327 100280360 -84008302 + AT_rich Low_complexity Low_complexity 1 33 0 724 262 28 73 chr4 100280473 100280759 -84007903 + LTR68 LTR ERV1 1 273 -467 417 305 71 101 chr4 100280776 100281252 -84007410 - L1ME LINE L1 -5580 490 29 21 0 0 0 chr4 100281442 100281463 -84007199 + AT_rich Low_complexity Low_complexity 1 21 0 420 325 126 18 chr4 100282132 100282474 -84006188 - L1M4 LINE L1 -1128 5018 4640 561 278 82 34 chr4 100282555 100282933 -84005729 - L1ME LINE L1 -367 5803 5408 36671 39 0 1 chr4 100282934 100288241 -84000421 + L1PA4 LINE L1 873 6173 0 789 300 13 4 chr4 100288270 100288500 -84000162 - MIR SINE MIR -25 237 6 1388 258 84 93 chr4 100289553 100289930 -83998732 - MLT1E LTR MaLR -2 591 219 1345 50 0 39 chr4 100289930 100290112 -83998550 + L1PA3 LINE L1 5981 6155 0 1388 258 84 93 chr4 100290112 100290328 -83998334 - MLT1E LTR MaLR -374 219 3 2159 103 13 0 chr4 100290751 100291051 -83997611 + AluSx SINE Alu 3 306 -6 266 215 63 0 chr4 100291778 100291857 -83996805 + L1MC4 LINE L1 5003 5086 -1060 1507 241 51 13 chr4 100291861 100292652 -83996010 + L1MC4 LINE L1 5147 5735 -449 1144 250 18 14 chr4 100292421 100292701 -83995961 + L1MB8 LINE L1 5781 6061 -117 * 1020 199 99 78 chr4 100292755 100293137 -83995525 + Charlie4a DNA MER1_type 119 508 0 296 186 0 14 chr4 100293455 100293525 -83995137 + (TATATG)n Simple_repeat Simple_repeat 4 72 0 546 252 20 14 chr4 100295138 100295285 -83993377 - L1M4 LINE L1 -6372 170 23 887 266 140 16 chr4 100295304 100295747 -83992915 - L1M4 LINE L1 -1741 4405 3908 438 300 125 0 chr4 100295783 100296063 -83992599 - L1MEc LINE L1 -3981 2415 2101 248 281 35 18 chr4 100296083 100296197 -83992465 - L1MEc LINE L1 -4376 2020 1905 7888 11 0 0 chr4 100296294 100297685 -83990977 + L1PA2 LINE L1 4765 6155 0 1857 219 7 5 chr4 100298504 100298929 -83989733 - L1P LINE L1 -1266 4880 4455 207 220 0 0 chr4 100299120 100299170 -83989492 + GA-rich Low_complexity Low_complexity 3 52 0 552 265 17 0 chr4 100300014 100300131 -83988531 + MIR SINE MIR 2 120 -142 1544 292 72 23 chr4 100300176 100300324 -83988338 + L1M4b LINE L1 228 367 -6492 189 74 0 0 chr4 100300324 100300351 -83988311 + (CA)n Simple_repeat Simple_repeat 1 27 0 1544 292 72 23 chr4 100300351 100300730 -83987932 + L1M4b LINE L1 367 781 -6078 2506 180 40 72 chr4 100300735 100301303 -83987359 + MLT2B3 LTR ERVL 5 554 0 621 289 93 15 chr4 100301337 100301703 -83986959 + L1M4b LINE L1 1959 2472 -4596 486 296 42 34 chr4 100302121 100302503 -83986159 + L1M4b LINE L1 2663 3047 -4091 624 204 210 6 chr4 100302665 100302827 -83985835 - MER58 DNA MER1_type -2224 196 2 1829 188 10 34 chr4 100302854 100303270 -83985392 - L1MA7 LINE L1 -1 6290 5885 2709 160 10 2 chr4 100303270 100303752 -83984910 + L1MA7 LINE L1 5377 5862 -429 382 315 19 0 chr4 100303745 100303907 -83984755 + L1M4b LINE L1 3043 3207 -3750 * 699 80 0 0 chr4 100303887 100303975 -83984687 + L1P3 LINE L1 11 98 -6363 * 17203 194 33 91 chr4 100303958 100307976 -83980686 + L1MB8 LINE L1 297 3837 -2341 1486 208 3 23 chr4 100307976 100308279 -83980383 + AluJo SINE Alu 1 297 -15 17203 194 33 91 chr4 100308279 100310436 -83978226 + L1MB8 LINE L1 3837 6117 -61 860 236 58 27 chr4 100310477 100310769 -83977893 + L1M4b LINE L1 4155 4455 -2502 215 381 0 0 chr4 100311396 100311480 -83977182 + MIR SINE MIR 159 242 -20 1639 222 98 42 chr4 100311902 100312380 -83976282 + MLT1D LTR MaLR 1 505 0 324 302 19 25 chr4 100312672 100312831 -83975831 - L1ME LINE L1 -375 5746 5589 25 83 0 0 chr4 100312982 100313042 -83975620 + AT_rich Low_complexity Low_complexity 1 60 0 190 255 0 43 chr4 100313124 100313171 -83975491 - L2 LINE L2 -76 3237 3193 455 182 94 20 chr4 100313202 100313298 -83975364 + MLT1D LTR MaLR 259 334 -56 208 243 29 86 chr4 100313766 100313836 -83974826 + L2 LINE L2 3236 3301 -12 354 256 64 0 chr4 100314487 100314565 -83974097 - MLT1D LTR MaLR -421 84 2 7049 185 23 22 chr4 100314812 100316483 -83972179 + L1MA4 LINE L1 4692 6371 -740 2177 104 10 0 chr4 100316483 100316790 -83971872 + AluSg SINE Alu 1 310 0 7049 185 23 22 chr4 100316790 100317526 -83971136 + L1MA4 LINE L1 6371 7105 -6 21 0 0 0 chr4 100317656 100317677 -83970985 + AT_rich Low_complexity Low_complexity 1 21 0 396 104 0 0 chr4 100317886 100317953 -83970709 + (TC)n Simple_repeat Simple_repeat 2 68 0 775 201 14 0 chr4 100317954 100318098 -83970564 - FRAM SINE Alu -29 147 2 29 28 0 0 chr4 100318280 100318316 -83970346 + AT_rich Low_complexity Low_complexity 1 36 0 426 264 89 73 chr4 100318725 100319028 -83969634 + L1MC/D LINE L1 5319 5626 -2182 406 109 54 0 chr4 100319037 100319129 -83969533 + (TA)n Simple_repeat Simple_repeat 2 98 0 205 319 22 44 chr4 100319325 100319416 -83969246 - MIR SINE MIR -66 142 54 21 0 0 0 chr4 100319644 100319665 -83968997 + AT_rich Low_complexity Low_complexity 1 21 0 464 341 22 0 chr4 100319940 100320166 -83968496 + L1MC1 LINE L1 5500 5730 -391 5008 128 31 9 chr4 100320417 100321079 -83967583 - L1PB2 LINE L1 -1 6150 5465 186 43 0 0 chr4 100321079 100321102 -83967560 + (TTA)n Simple_repeat Simple_repeat 2 24 0 5008 128 31 9 chr4 100321102 100321249 -83967413 - L1PB2 LINE L1 -686 5465 5323 6685 72 0 4 chr4 100321250 100322232 -83966430 - L1PA7 LINE L1 -4 6150 5166 21608 105 20 9 chr4 100322232 100325391 -83963271 - HUERS-P3b LTR ERV1 -1153 6265 3073 2371 192 33 2 chr4 100325391 100325819 -83962843 + LTR8 LTR ERV1 1 441 -250 15232 111 18 50 chr4 100325819 100326182 -83962480 - HUERS-P3 LTR ERV1 -4776 2642 2269 453 19 0 0 chr4 100326182 100326236 -83962426 + (TA)n Simple_repeat Simple_repeat 2 55 0 15232 111 18 50 chr4 100326236 100326387 -83962275 - HUERS-P3 LTR ERV1 -5149 2269 2115 2270 119 0 3 chr4 100326387 100326698 -83961964 - AluSq SINE Alu -3 310 1 15232 111 18 50 chr4 100326698 100329204 -83959458 - HUERS-P3 LTR ERV1 -5303 2115 18 4238 105 10 19 chr4 100329222 100329840 -83958822 - LTR9 LTR ERV1 0 612 1 1571 121 30 0 chr4 100329842 100330106 -83958556 + L1MA2 LINE L1 6027 6298 -6 218 345 207 9 chr4 100330235 100330351 -83958311 - MER5B DNA MER1_type -29 149 11 208 286 0 0 chr4 100331307 100331370 -83957292 + MIR SINE MIR 141 203 -59 317 318 194 9 chr4 100331508 100331683 -83956979 + MIR SINE MIR 6 230 -32 2166 113 0 7 chr4 100331683 100331985 -83956677 + AluSc SINE Alu 1 300 -9 317 318 194 9 chr4 100331985 100332026 -83956636 + MIR SINE MIR 230 262 0 11712 163 50 28 chr4 100332331 100332383 -83956279 + Tigger1 DNA MER2_type 1 50 -2368 270 0 0 0 chr4 100332383 100332413 -83956249 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 11712 163 50 28 chr4 100332413 100334724 -83953938 + Tigger1 DNA MER2_type 50 2417 -1 2249 89 10 0 chr4 100336477 100336770 -83951892 + AluSg1 SINE Alu 9 304 -5 2102 176 15 7 chr4 100336786 100337195 -83951467 + L1MC1 LINE L1 5922 6333 0 940 192 39 34 chr4 100338265 100338499 -83950163 - MIR SINE MIR -24 238 4 513 280 86 71 chr4 100338721 100339046 -83949616 - L1MC/D LINE L1 -1984 5824 5495 1451 191 96 7 chr4 100339911 100340214 -83948448 + MER57A LTR ERV1 74 403 0 497 307 34 30 chr4 100340753 100341020 -83947642 + L1MCc LINE L1 1167 1434 -4989 275 288 114 42 chr4 100341040 100341373 -83947289 + L1MCc LINE L1 1999 2355 -4767 233 191 0 0 chr4 100341459 100341501 -83947161 + MSTA LTR MaLR 374 415 -13 2084 119 144 6 chr4 100341519 100341881 -83946781 - MSTA LTR MaLR -14 414 3 571 243 207 0 chr4 100342325 100342494 -83946168 + MIR SINE MIR 56 259 -3 239 325 127 16 chr4 100343936 100344062 -83944600 + L2 LINE L2 2934 3073 -199 8863 216 33 17 chr4 100344108 100346407 -83942255 + L1MA10 LINE L1 2658 4992 -1154 4694 174 68 36 chr4 100346409 100347489 -83941173 + L1MA10 LINE L1 5230 6157 -9 680 132 50 25 chr4 100347882 100348003 -83940659 + L1PB4 LINE L1 6028 6151 -5 225 348 36 54 chr4 100348903 100349015 -83939647 + L2 LINE L2 3163 3272 0 24 0 0 0 chr4 100350210 100350234 -83938428 + AT_rich Low_complexity Low_complexity 1 24 0 339 307 71 90 chr4 100351213 100351425 -83937237 + MIR SINE MIR 37 244 -18 568 280 121 8 chr4 100352177 100352451 -83936211 - MLT1G3 LTR MaLR -14 581 187 256 262 73 29 chr4 100353588 100353790 -83934872 + L1ME3 LINE L1 5429 5648 -536 1161 150 45 38 chr4 100353903 100354190 -83934472 - THE1C LTR MaLR 0 375 1 346 329 73 12 chr4 100354198 100354362 -83934300 + L1ME3 LINE L1 5783 5956 -206 26 30 0 0 chr4 100354368 100354401 -83934261 + AT_rich Low_complexity Low_complexity 1 33 0 872 241 89 19 chr4 100354713 100354970 -83933692 - MLT1C LTR MaLR 0 467 193 279 329 25 0 chr4 100355045 100355124 -83933538 - MLT1C LTR MaLR -424 81 1 416 250 58 8 chr4 100356616 100356736 -83931926 + LTR16C LTR ERVL 366 491 0 1625 184 144 8 chr4 100356880 100357255 -83931407 + MSTB LTR MaLR 1 426 0 1485 225 78 43 chr4 100357447 100357935 -83930727 + MLT1D LTR MaLR 1 505 0 354 337 83 33 chr4 100357935 100358211 -83930451 + L2 LINE L2 3024 3313 0 2136 142 26 0 chr4 100359399 100359709 -83928953 - LTR18A LTR ERVL -39 318 1 7137 178 32 0 chr4 100359710 100360913 -83927749 - HERVL18 LTR ERVL 0 6047 4806 2573 103 3 0 chr4 100360913 100361262 -83927400 - THE1A LTR MaLR 0 355 6 10628 148 11 1 chr4 100361262 100362880 -83925782 - HERVL18 LTR ERVL -1237 4810 3177 1016 280 143 42 chr4 100363811 100364293 -83924369 + L1MCa LINE L1 64 482 -5563 25 31 0 0 chr4 100364351 100364383 -83924279 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr4 100364403 100364433 -83924229 + AT_rich Low_complexity Low_complexity 1 30 0 771 172 93 179 chr4 100364616 100365035 -83923627 - LOR1a LTR ERV1 0 497 115 468 221 11 0 chr4 100365062 100365157 -83923505 - LOR1a-int LTR ERV1 0 8120 8025 3085 199 50 19 chr4 100365160 100365935 -83922727 - LOR1a-int LTR ERV1 -422 7698 4773 891 167 18 24 chr4 100365938 100366106 -83922556 - MER49 LTR ERV1 -753 170 4 1433 171 93 4 chr4 100366109 100366433 -83922229 - MER49-int LTR ERV1 -1 7097 6381 1507 152 89 11 chr4 100366456 100366785 -83921877 - MER49-int LTR ERV1 -599 6159 3777 508 167 44 26 chr4 100366776 100366890 -83921772 - LOR1a-int LTR ERV1 -2189 4142 4027 * 979 128 45 0 chr4 100367079 100367235 -83921427 - LOR1a-int LTR ERV1 -4342 3778 3616 12874 130 75 66 chr4 100367242 100367619 -83921043 - LOR1a-int LTR ERV1 -5237 2883 2511 3901 43 8 0 chr4 100367619 100368104 -83920558 - L1PA3 LINE L1 0 6155 5667 12874 130 75 66 chr4 100368104 100370035 -83918627 - LOR1a-int LTR ERV1 -5609 2511 500 297 156 0 0 chr4 100370035 100370080 -83918582 - 5S rRNA rRNA -70 51 7 12874 130 75 66 chr4 100370080 100370499 -83918163 - LOR1a-int LTR ERV1 -7620 500 86 25 31 0 0 chr4 100371076 100371108 -83917554 + AT_rich Low_complexity Low_complexity 1 32 0 3012 61 8 2 chr4 100371193 100371587 -83917075 - L1PA7 LINE L1 -1 6153 5758 2603 49 6 0 chr4 100371587 100371911 -83916751 + L1P3 LINE L1 5337 5662 -492 21 0 0 0 chr4 100372185 100372206 -83916456 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 100372759 100372781 -83915881 + AT_rich Low_complexity Low_complexity 1 22 0 1158 191 9 123 chr4 100373226 100373566 -83915096 + AluJo SINE Alu 2 302 0 372 262 90 26 chr4 100373988 100374255 -83914407 - L1MC5 LINE L1 -195 7766 7483 381 294 134 48 chr4 100374642 100375098 -83913564 - HAL1b LINE L1 -800 548 54 477 316 86 60 chr4 100376459 100377189 -83911473 - MERVL LTR ERVL -2016 3469 2721 429 296 17 40 chr4 100377641 100377817 -83910845 - MER21-int LTR ERV1 -2314 1877 1706 26 82 0 0 chr4 100379826 100379887 -83908775 + AT_rich Low_complexity Low_complexity 1 61 0 360 304 159 0 chr4 100380021 100380159 -83908503 + MIR SINE MIR 2 161 -101 1675 103 0 0 chr4 100380262 100380494 -83908168 - LOR1a LTR ERV1 -265 232 1 450 112 4 0 chr4 100380665 100380734 -83907928 - THE1A LTR MaLR 0 355 294 26 30 0 0 chr4 100381215 100381248 -83907414 + AT_rich Low_complexity Low_complexity 1 33 0 1152 150 33 0 chr4 100381724 100381904 -83906758 - AluSg SINE Alu -2 310 125 268 271 47 0 chr4 100381940 100382025 -83906637 - L1MC4 LINE L1 -1339 6703 6615 236 272 0 33 chr4 100382020 100382112 -83906550 - L1MC4 LINE L1 -1339 6703 6615 * 357 148 37 0 chr4 100382114 100382195 -83906467 + (TA)n Simple_repeat Simple_repeat 1 84 0 755 88 132 0 chr4 100382195 100382309 -83906353 - AluSg SINE Alu -181 129 1 195 42 0 0 chr4 100383657 100383681 -83904981 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 532 297 41 38 chr4 100383713 100384080 -83904582 - HAL1b LINE L1 -755 593 226 777 238 61 39 chr4 100384103 100384334 -83904328 - L1M4 LINE L1 -6300 242 7 26 0 0 0 chr4 100384546 100384572 -83904090 + AT_rich Low_complexity Low_complexity 1 26 0 1943 182 93 19 chr4 100385158 100385575 -83903087 + MSTB2 LTR MaLR 10 457 0 604 290 55 47 chr4 100386076 100386331 -83902331 + MIR SINE MIR 6 262 0 1948 211 11 61 chr4 100387184 100387624 -83901038 + MLT1C-int LTR MaLR 954 1371 0 1611 213 40 67 chr4 100387625 100388104 -83900558 + MLT1C LTR MaLR 2 467 0 226 185 49 74 chr4 100388106 100388187 -83900475 - L2 LINE L2 -1340 1974 1896 209 381 0 8 chr4 100388545 100388671 -83899991 - L2 LINE L2 -1876 1438 1314 624 105 79 0 chr4 100389979 100390093 -83898569 - L1MA5A LINE L1 0 6297 6175 279 0 0 0 chr4 100390194 100390225 -83898437 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1481 225 5 30 chr4 100390226 100390599 -83898063 + L1M4 LINE L1 3746 4109 -2037 11073 55 11 13 chr4 100390606 100391995 -83896667 - SVA Other Other 0 1386 1 216 398 48 0 chr4 100392072 100392175 -83896487 + L2 LINE L2 3188 3295 -18 1435 138 29 112 chr4 100393027 100393367 -83895295 + AluJo SINE Alu 1 312 0 21 0 0 0 chr4 100397372 100397393 -83891269 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chr4 100398402 100398443 -83890219 + (CA)n Simple_repeat Simple_repeat 2 42 0 241 276 153 31 chr4 100398540 100398638 -83890024 - MIR SINE MIR -147 115 6 24 0 0 0 chr4 100399023 100399047 -83889615 + AT_rich Low_complexity Low_complexity 1 24 0 2482 128 43 10 chr4 100399081 100399495 -83889167 - MSTA LTR MaLR 0 428 1 386 343 162 8 chr4 100400594 100400958 -83887704 + L2 LINE L2 1789 2208 -1106 41102 63 7 1 chr4 100401032 100407133 -83881529 - L1PA4 LINE L1 -8 6147 11 256 221 0 0 chr4 100408089 100408157 -83880505 + L1MC4 LINE L1 6641 6708 -1334 535 327 73 22 chr4 100408337 100408787 -83879875 + L2 LINE L2 2223 2787 -527 329 341 67 65 chr4 100408826 100409272 -83879390 + L2 LINE L2 2867 3313 0 230 306 65 23 chr4 100409493 100409709 -83878953 + L1ME LINE L1 5608 5832 -289 1834 182 32 16 chr4 100409910 100410279 -83878383 + THE1C LTR MaLR 1 375 0 2384 79 0 13 chr4 100410525 100410840 -83877822 - AluY SINE Alu 0 311 1 22 25 0 25 chr4 100411306 100411317 -83877345 + AT_rich Low_complexity Low_complexity 1 11 -28 765 99 25 0 chr4 100411317 100411438 -83877224 + L1MB3 LINE L1 6052 6175 -8 22 25 0 25 chr4 100411438 100411466 -83877196 + AT_rich Low_complexity Low_complexity 11 39 0 204 111 0 0 chr4 100411582 100411618 -83877044 + (TTTTA)n Simple_repeat Simple_repeat 1 36 0 13494 29 1 0 chr4 100411620 100413960 -83874702 - L1PA4 LINE L1 -26 6129 3788 615 239 18 93 chr4 100414350 100414576 -83874086 - MER63A DNA MER1_type 0 210 2 308 379 17 0 chr4 100414588 100414704 -83873958 - L2 LINE L2 0 3313 3196 2061 287 72 16 chr4 100414709 100415575 -83873087 + L2 LINE L2 2237 3227 -86 996 159 4 31 chr4 100415707 100415934 -83872728 - L1MA4 LINE L1 -2 6298 6078 619 161 66 15 chr4 100415935 100416072 -83872590 - L1MA4 LINE L1 -310 5995 5852 23 33 0 0 chr4 100416150 100416180 -83872482 + AT_rich Low_complexity Low_complexity 1 30 0 4415 178 25 74 chr4 100416891 100416935 -83871727 + Tigger6a DNA MER2_type 34 79 -1518 2312 71 0 0 chr4 100416935 100417275 -83871387 + AluY SINE Alu 1 340 0 4415 178 25 74 chr4 100417275 100417582 -83871080 + Tigger6a DNA MER2_type 79 399 -1198 754 238 0 0 chr4 100417582 100417729 -83870933 + FRAM SINE Alu 2 148 -18 4415 178 25 74 chr4 100417729 100418479 -83870183 + Tigger6a DNA MER2_type 399 1083 0 297 0 0 0 chr4 100418914 100418947 -83869715 + (CA)n Simple_repeat Simple_repeat 2 34 0 2505 121 62 9 chr4 100418971 100419393 -83869269 - Tigger2 DNA MER2_type -2 2716 2273 429 138 15 0 chr4 100419383 100419448 -83869214 - Tigger2 DNA MER2_type -2649 69 4 * 499 191 46 20 chr4 100419788 100419940 -83868722 - L1M4 LINE L1 -3708 2438 2283 2119 162 58 112 chr4 100420008 100420632 -83868030 - LTR38B LTR ERV1 -20 590 1 325 341 67 0 chr4 100421184 100421348 -83867314 + L1ME LINE L1 5510 5684 -437 793 229 70 53 chr4 100422093 100422434 -83866228 - L1M4 LINE L1 -3513 2633 2287 1845 251 75 32 chr4 100422534 100422573 -83866089 - L1ME1 LINE L1 -19 6958 6922 3514 115 2 8 chr4 100422573 100423087 -83865575 - MER9 LTR ERVK 0 511 1 1845 251 75 32 chr4 100423087 100423699 -83864963 - L1ME1 LINE L1 -55 6922 6279 444 205 82 8 chr4 100423750 100423872 -83864790 - L1MA8 LINE L1 -4 6287 6157 946 215 103 84 chr4 100423902 100424424 -83864238 - L1ME1 LINE L1 -3378 3579 3048 * 1787 255 88 75 chr4 100424415 100425102 -83863560 - L1ME1 LINE L1 -4588 2371 1694 213 39 0 0 chr4 100425102 100425128 -83863534 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1787 255 88 75 chr4 100425128 100425247 -83863415 - L1ME1 LINE L1 -5265 1694 1578 15727 31 0 2 chr4 100425247 100427899 -83860763 - L1PA3 LINE L1 0 6155 3507 1787 255 88 75 chr4 100427899 100428809 -83859853 - L1ME1 LINE L1 -5381 1578 650 310 281 110 2 chr4 100428818 100428990 -83859672 - L1ME1 LINE L1 -6360 495 11 2644 264 48 28 chr4 100428996 100429627 -83859035 - L1M4 LINE L1 -850 5296 4679 397 0 0 0 chr4 100429627 100429671 -83858991 + (TTTA)n Simple_repeat Simple_repeat 1 164 0 1480 164 82 15 chr4 100429671 100429940 -83858722 - AluSx SINE Alu -1 330 1 2644 264 48 28 chr4 100429940 100430688 -83857974 - L1M4 LINE L1 -1466 4680 3883 292 61 45 30 chr4 100430775 100430841 -83857821 + CT-rich Low_complexity Low_complexity 1 67 0 1178 237 119 39 chr4 100430858 100431549 -83857113 - L1M4 LINE L1 -2512 3634 2889 742 259 37 23 chr4 100431551 100431983 -83856679 + MLT1E LTR MaLR 1 532 -61 632 236 6 38 chr4 100431987 100432020 -83856642 + FRAM SINE Alu 1 34 -278 2222 111 32 22 chr4 100432020 100432391 -83856271 + THE1C LTR MaLR 1 375 0 632 236 6 38 chr4 100432391 100432514 -83856148 + FRAM SINE Alu 34 152 -24 23 0 0 0 chr4 100432570 100432593 -83856069 + AT_rich Low_complexity Low_complexity 1 23 0 1350 260 56 4 chr4 100432656 100433122 -83855540 - L1M4 LINE L1 -3255 2891 2402 321 325 0 33 chr4 100434058 100434178 -83854484 - L1MC4 LINE L1 -1313 6729 6614 * 367 247 45 0 chr4 100434102 100434191 -83854471 + L1MC4 LINE L1 6614 6706 -1336 24 0 0 0 chr4 100434726 100434750 -83853912 + AT_rich Low_complexity Low_complexity 1 24 0 207 342 13 0 chr4 100435984 100436063 -83852599 + L2 LINE L2 3223 3302 -11 180 111 0 0 chr4 100436064 100436091 -83852571 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 6461 102 17 0 chr4 100436771 100438123 -83850539 - L1PA11 LINE L1 0 6174 4809 201 148 19 37 chr4 100438281 100438335 -83850327 + (TTATG)n Simple_repeat Simple_repeat 2 54 0 410 314 21 27 chr4 100439052 100439240 -83849422 + LTR33 LTR ERVL 334 520 -1 2291 94 0 0 chr4 100439809 100440108 -83848554 + AluSc SINE Alu 1 299 -10 204 312 88 48 chr4 100440207 100440332 -83848330 - L3 LINE CR1 -11 1566 1437 193 287 85 11 chr4 100440471 100440565 -83848097 - L3 LINE CR1 -294 1283 1183 11698 144 60 6 chr4 100440865 100442842 -83845820 + Tigger1 DNA MER2_type 1 2083 -335 9947 166 46 33 chr4 100442844 100445425 -83843237 + L1MA4 LINE L1 2967 5786 -514 327 65 0 0 chr4 100445425 100445471 -83843191 + MADE1 DNA Mariner 1 46 -34 9947 166 46 33 chr4 100445471 100445620 -83843042 + L1MA4 LINE L1 5786 5932 -368 838 177 0 49 chr4 100445621 100445795 -83842867 + L1MA4 LINE L1 6102 6266 -34 2202 117 0 3 chr4 100445795 100446093 -83842569 - AluSx SINE Alu -15 297 1 838 177 0 49 chr4 100446093 100446121 -83842541 + L1MA4 LINE L1 6266 6294 -6 1439 112 31 0 chr4 100446169 100446392 -83842270 + Tigger1 DNA MER2_type 2079 2308 -110 3285 37 2 0 chr4 100496396 100496829 -83791833 + L1PA4 LINE L1 5746 6179 0 2140 108 12 0 chr4 100496830 100497163 -83791499 - L1P5 LINE L1 -559 5592 5256 6554 25 0 0 chr4 100497188 100497951 -83790711 - L1PA2 LINE L1 -1 6154 5392 2667 219 7 0 chr4 100497982 100498602 -83790060 - L1 LINE L1 -904 5242 4619 308 203 23 175 chr4 100498600 100498817 -83789845 + L1ME1 LINE L1 4764 4947 -1199 * 318 241 61 40 chr4 100498832 100499187 -83789475 + L1ME1 LINE L1 5764 6159 -7 248 217 0 0 chr4 100500663 100500709 -83787953 - LTR40a LTR ERVL 0 519 474 522 243 24 25 chr4 100500772 100500948 -83787714 - L1MA9 LINE L1 -202 6110 5937 6324 108 10 0 chr4 100500948 100502701 -83785961 - L1PA8 LINE L1 -4 6483 4722 1635 97 11 30 chr4 100502710 100502928 -83785734 - L1PA8 LINE L1 -4826 1635 1421 5433 157 20 30 chr4 100502928 100504010 -83784652 + MER11C LTR ERVK 1 1071 0 1635 97 11 30 chr4 100504010 100504060 -83784602 - L1PA8 LINE L1 -5040 1421 1372 1154 78 0 0 chr4 100504442 100504583 -83784079 + AluSg SINE Alu 1 141 -169 4737 196 38 3 chr4 100504686 100506317 -83782345 + L1PB3 LINE L1 4213 5903 -251 294 354 150 31 chr4 100506600 100506894 -83781768 + L3 LINE CR1 843 1171 -406 279 259 130 38 chr4 100506903 100507034 -83781628 - L2 LINE L2 -3 3310 3168 3334 202 34 15 chr4 100507137 100507672 -83780990 - L1 LINE L1 -2098 4048 3525 216 0 0 0 chr4 100507672 100507696 -83780966 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1871 122 0 7 chr4 100507698 100507968 -83780694 - AluSg SINE Alu -18 292 25 3334 202 34 15 chr4 100507968 100508487 -83780175 - L1 LINE L1 -2621 3525 2869 442 220 30 0 chr4 100508488 100508588 -83780074 + L1PB4 LINE L1 4085 4187 -1959 422 158 0 0 chr4 100508585 100508661 -83780001 - L1 LINE L1 -1286 4860 4785 * 2450 65 15 9 chr4 100508661 100508988 -83779674 + L1PA10 LINE L1 5831 6168 0 4850 190 31 58 chr4 100508999 100510697 -83777965 + L1PB4 LINE L1 4175 5820 -336 330 26 0 0 chr4 100510697 100510736 -83777926 + (CA)n Simple_repeat Simple_repeat 1 39 0 4850 190 31 58 chr4 100510736 100511065 -83777597 + L1PB4 LINE L1 5820 6156 0 536 353 22 24 chr4 100511065 100511369 -83777293 - L2 LINE L2 -247 3066 2762 243 239 30 0 chr4 100511569 100511636 -83777026 - MLT1L LTR MaLR -158 457 389 1667 201 54 3 chr4 100511649 100511983 -83776679 + MLT1A1 LTR MaLR 15 365 0 327 274 75 27 chr4 100512144 100512290 -83776372 - MLT1J LTR MaLR -331 180 28 984 300 80 80 chr4 100512327 100512437 -83776225 - L2 LINE L2 -674 2640 2531 2058 119 0 3 chr4 100512437 100512730 -83775932 + AluSx SINE Alu 5 296 -16 984 300 80 80 chr4 100512730 100512743 -83775919 - L2 LINE L2 -783 2531 2519 2233 105 0 0 chr4 100512743 100513039 -83775623 + AluSq SINE Alu 1 296 -17 984 300 80 80 chr4 100513039 100513663 -83774999 - L2 LINE L2 -794 2520 1892 200 219 0 14 chr4 100514719 100514792 -83773870 + (TA)n Simple_repeat Simple_repeat 2 73 0 349 66 33 0 chr4 100514848 100514909 -83773753 + (CA)n Simple_repeat Simple_repeat 2 64 0 376 150 80 35 chr4 100516284 100516397 -83772265 + MER53 DNA DNA 1 118 -71 283 121 182 0 chr4 100516435 100516501 -83772161 + MER53 DNA DNA 112 189 0 7574 32 0 3 chr4 100518037 100519717 -83768945 - L1PA3 LINE L1 0 6155 4479 30 27 0 0 chr4 100520327 100520364 -83768298 + AT_rich Low_complexity Low_complexity 1 37 0 186 222 0 0 chr4 100520377 100520431 -83768231 + (TA)n Simple_repeat Simple_repeat 2 55 0 327 308 0 39 chr4 100520661 100520791 -83767871 + MIR SINE MIR 112 236 -26 10423 172 27 28 chr4 100521051 100522643 -83766019 - L1M2 LINE L1 -637 5654 4066 2341 130 8 3 chr4 100522643 100523004 -83765658 + THE1B LTR MaLR 1 363 -1 10423 172 27 28 chr4 100523004 100524059 -83764603 - L1M2 LINE L1 -2225 4066 3011 1360 278 117 32 chr4 100524389 100525173 -83763489 - L1ME3A LINE L1 -4 6166 5316 683 308 58 11 chr4 100525213 100525664 -83762998 - L1ME3A LINE L1 -869 5277 4806 797 270 86 34 chr4 100525683 100526209 -83762453 - L1ME3A LINE L1 -1382 4764 4212 234 196 54 0 chr4 100526577 100526633 -83762029 + MER53 DNA DNA 47 105 -84 30 59 0 0 chr4 100526917 100526968 -83761694 + AT_rich Low_complexity Low_complexity 1 51 0 256 312 148 30 chr4 100526973 100527087 -83761575 - MIR SINE MIR -17 245 146 2045 144 18 37 chr4 100527087 100527469 -83761193 - THE1C LTR MaLR 0 375 1 256 312 148 30 chr4 100527469 100527556 -83761106 - MIR SINE MIR -116 146 20 204 40 0 0 chr4 100527807 100527832 -83760830 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 1065 321 62 29 chr4 100528804 100529421 -83759241 + HsTC2 DNA Tc2 1 637 -1261 3782 139 35 1 chr4 100529421 100530294 -83758368 - L1P4 LINE L1 -557 5604 4691 294 29 0 0 chr4 100530294 100530329 -83758333 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3782 139 35 1 chr4 100530329 100530426 -83758236 - L1P4 LINE L1 -1470 4691 4599 3418 118 2 2 chr4 100530424 100530925 -83757737 + L1PA14 LINE L1 5612 6112 -49 * 3593 110 2 18 chr4 100530426 100530928 -83757734 + L1PA14 LINE L1 5614 6108 -53 3371 195 21 79 chr4 100530928 100531956 -83756706 - LTR5 LTR ERVK 0 969 1 3593 110 2 18 chr4 100531956 100532008 -83756654 + L1PA14 LINE L1 6108 6159 -2 378 250 33 17 chr4 100532008 100532128 -83756534 + HsTC2 DNA Tc2 625 746 -1152 * 630 244 173 50 chr4 100532098 100532521 -83756141 + HsTC2 DNA Tc2 1250 1900 0 204 259 69 60 chr4 100532521 100532637 -83756025 - MIR SINE MIR -67 195 79 236 333 21 0 chr4 100532715 100532808 -83755854 + MIR3 SINE MIR 107 201 -7 24 77 0 0 chr4 100533114 100533166 -83755496 + AT_rich Low_complexity Low_complexity 1 52 0 761 227 0 12 chr4 100534336 100534508 -83754154 + L1ME1 LINE L1 5417 5586 -578 1210 233 69 29 chr4 100534508 100534856 -83753806 - MLT1A1 LTR MaLR 0 365 4 1317 225 13 49 chr4 100534897 100535284 -83753378 + L1ME1 LINE L1 5626 5998 -168 2027 137 0 3 chr4 100535381 100535674 -83752988 - AluSx SINE Alu -20 292 1 776 178 0 0 chr4 100536370 100536499 -83752163 + FLAM_C SINE Alu 5 133 0 21 0 0 0 chr4 100538286 100538307 -83750355 + AT_rich Low_complexity Low_complexity 1 21 0 1193 208 67 101 chr4 100539421 100539796 -83748866 + MER57A LTR ERV1 42 403 0 1379 261 126 41 chr4 100539797 100540446 -83748216 - Charlie2a DNA MER1_type -33 2829 2236 2243 58 0 4 chr4 100540446 100540722 -83747940 + AluY SINE Alu 23 297 -14 1379 261 126 41 chr4 100540722 100541312 -83747350 - Charlie2a DNA MER1_type -626 2236 1465 657 38 0 0 chr4 100541348 100541428 -83747234 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 730 300 76 17 chr4 100541441 100541798 -83746864 - Charlie2b DNA MER1_type -2113 669 292 783 236 99 72 chr4 100541845 100542412 -83746250 - L1MC5 LINE L1 -64 7897 7316 184 197 15 30 chr4 100542412 100542478 -83746184 + CT-rich Low_complexity Low_complexity 2 66 0 237 212 18 62 chr4 100542541 100542654 -83746008 - L1MC5 LINE L1 -722 7239 7132 * 5376 188 35 33 chr4 100542631 100543932 -83744730 - L1 LINE L1 -1662 4484 3181 1612 176 39 8 chr4 100544113 100544476 -83744186 - L1MA9 LINE L1 0 6312 5939 246 350 86 7 chr4 100544538 100544678 -83743984 - L2 LINE L2 -578 2736 2586 1823 133 43 87 chr4 100544788 100545180 -83743482 + THE1C LTR MaLR 1 375 0 570 262 35 0 chr4 100546305 100546477 -83742185 - L1ME2 LINE L1 -278 5886 5709 303 231 75 37 chr4 100546482 100546537 -83742125 - L1ME2 LINE L1 -966 5180 5129 747 139 54 0 chr4 100546537 100546703 -83741959 - L1MA7 LINE L1 0 6291 6117 303 231 75 37 chr4 100546703 100546781 -83741881 - L1ME2 LINE L1 -1017 5129 5042 405 256 62 31 chr4 100546902 100547062 -83741600 - L1ME2 LINE L1 -1260 4886 4722 1364 229 83 23 chr4 100547207 100547722 -83740940 - L1ME2 LINE L1 -1808 4338 3793 6121 151 76 14 chr4 100547730 100548774 -83739888 - Tigger3b DNA MER2_type -1797 1231 106 1885 147 155 11 chr4 100548774 100549148 -83739514 - MSTA LTR MaLR 0 428 1 6121 151 76 14 chr4 100549148 100549262 -83739400 - Tigger3b DNA MER2_type -2922 106 1 622 286 43 51 chr4 100549847 100549907 -83738755 + MIR SINE MIR 29 88 -174 2259 116 0 0 chr4 100549907 100550208 -83738454 + AluSq SINE Alu 1 301 -12 622 286 43 51 chr4 100550208 100550381 -83738281 + MIR SINE MIR 88 260 -2 225 0 0 0 chr4 100551229 100551254 -83737408 + (CA)n Simple_repeat Simple_repeat 2 26 0 1962 139 0 3 chr4 100552549 100552858 -83735804 - AluSg SINE Alu -2 308 1 304 265 103 52 chr4 100552974 100553110 -83735552 - L1ME4a LINE L1 -1 6120 5978 768 243 27 32 chr4 100553322 100553507 -83735155 + L1MDb LINE L1 20 203 -6206 * 2014 247 63 11 chr4 100553500 100554337 -83734325 + L1MDb LINE L1 788 1694 -4712 * 2610 288 42 2 chr4 100554335 100555395 -83733267 + L1MDb LINE L1 2966 4067 -2339 2708 168 30 13 chr4 100555412 100555942 -83732720 + L1MC1 LINE L1 5457 5995 -338 1122 149 5 51 chr4 100555944 100556158 -83732504 + L1MC1 LINE L1 6117 6320 -13 2949 172 3 24 chr4 100556161 100556782 -83731880 - L1PB4 LINE L1 -1447 4699 4092 * 4420 189 30 3 chr4 100556781 100558218 -83730444 + L1PB4 LINE L1 4678 6148 -8 1589 277 55 30 chr4 100558260 100559064 -83729598 + L1MDb LINE L1 4122 4945 -1461 422 83 0 0 chr4 100559061 100559133 -83729529 + L1M1 LINE L1 3157 3228 -4337 * 1712 153 0 43 chr4 100559135 100559417 -83729245 + AluSx SINE Alu 4 273 -39 553 113 10 10 chr4 100559428 100559525 -83729137 + (GGGA)n Simple_repeat Simple_repeat 3 99 0 10498 170 25 43 chr4 100559533 100560902 -83727760 + L1M1 LINE L1 3210 4498 -3067 1993 152 0 0 chr4 100560902 100561205 -83727457 + AluSx SINE Alu 7 309 -3 10498 170 25 43 chr4 100561205 100562612 -83726050 + L1M1 LINE L1 4498 5929 -1636 327 259 173 51 chr4 100563019 100563216 -83725446 + MLT1J2 LTR MaLR 97 317 -133 316 319 56 50 chr4 100563634 100563794 -83724868 + L3 LINE CR1 1412 1572 -5 23 54 0 0 chr4 100563812 100563849 -83724813 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr4 100564957 100564994 -83723668 + AT_rich Low_complexity Low_complexity 1 37 0 917 53 0 0 chr4 100565160 100565274 -83723388 - L1PA5 LINE L1 -3 6151 6038 23137 50 2 3 chr4 100565274 100568870 -83719792 + L1PA6 LINE L1 2436 6028 -126 185 364 52 26 chr4 100568895 100568972 -83719690 + L2 LINE L2 3157 3235 -37 25 31 0 0 chr4 100569884 100569916 -83718746 + AT_rich Low_complexity Low_complexity 1 32 0 200 128 26 0 chr4 100570324 100570363 -83718299 + T-rich Low_complexity Low_complexity 5 44 0 36 77 0 0 chr4 100570412 100570490 -83718172 + AT_rich Low_complexity Low_complexity 1 78 0 293 394 44 10 chr4 100571013 100571216 -83717446 + MIR SINE MIR 13 222 -40 324 338 219 24 chr4 100571346 100571811 -83716851 - L3 LINE CR1 -698 879 324 211 399 61 7 chr4 100571850 100571998 -83716664 - L2 LINE L2 -1 3271 3116 849 74 0 0 chr4 100572516 100572638 -83716024 + (TCTA)n Simple_repeat Simple_repeat 3 124 0 1977 174 23 48 chr4 100572638 100573034 -83715628 + MLT1B LTR MaLR 5 390 0 333 0 0 0 chr4 100573035 100573072 -83715590 + (TG)n Simple_repeat Simple_repeat 2 38 0 1140 220 42 81 chr4 100574535 100574966 -83713696 - MLT2D LTR ERVL 0 414 1 482 287 66 82 chr4 100575227 100575882 -83712780 - L1M4 LINE L1 -1319 4827 4184 5452 98 18 0 chr4 100577284 100578082 -83710580 - L1MA1 LINE L1 -6 6296 5485 23 0 0 0 chr4 100578227 100578250 -83710412 + AT_rich Low_complexity Low_complexity 1 23 0 7143 170 13 9 chr4 100578327 100579702 -83708960 - L1P LINE L1 -2027 4119 2740 3294 77 11 7 chr4 100579702 100580155 -83708507 + L1PA13 LINE L1 5401 5855 -308 511 56 0 0 chr4 100580155 100580224 -83708438 + L1PA13 LINE L1 6093 6163 0 5739 164 32 63 chr4 100580519 100581030 -83707632 - L1MA6 LINE L1 0 6300 5774 363 44 0 0 chr4 100581030 100581075 -83707587 + (TG)n Simple_repeat Simple_repeat 2 46 0 180 0 0 0 chr4 100581074 100581094 -83707568 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 5739 164 32 63 chr4 100581075 100583083 -83705579 - L1MA6 LINE L1 -526 5774 3899 22 0 0 0 chr4 100585200 100585222 -83703440 + AT_rich Low_complexity Low_complexity 1 22 0 239 186 129 0 chr4 100585607 100585677 -83702985 + MER116 DNA Mariner 2 80 0 2118 154 25 6 chr4 100587091 100587448 -83701214 + THE1B LTR MaLR 1 364 0 10165 120 37 4 chr4 100587448 100588972 -83699690 + THE1B-int LTR MaLR 1 1574 -6 2144 147 25 6 chr4 100588979 100589334 -83699328 + THE1B LTR MaLR 3 364 0 1645 236 97 58 chr4 100589335 100589851 -83698811 + MLT2B3 LTR ERVL 19 554 0 1486 154 79 11 chr4 100590802 100591069 -83697593 + AluJb SINE Alu 20 304 -8 208 178 27 55 chr4 100593306 100593379 -83695283 + T-rich Low_complexity Low_complexity 5 75 0 9703 197 31 21 chr4 100593411 100594987 -83693675 - L1PB3 LINE L1 0 6154 4595 1669 184 146 8 chr4 100594987 100595363 -83693299 - MSTA LTR MaLR 0 428 1 8027 156 40 42 chr4 100595363 100596945 -83691717 - MSTA-int LTR MaLR 0 1580 3 1949 162 141 8 chr4 100596947 100597324 -83691338 - MSTA LTR MaLR 0 428 2 9703 197 31 21 chr4 100597324 100598209 -83690453 - L1PB3 LINE L1 -1559 4595 3720 207 0 0 0 chr4 100598209 100598232 -83690430 + (TTG)n Simple_repeat Simple_repeat 2 24 0 9703 197 31 21 chr4 100598232 100599108 -83689554 - L1PB3 LINE L1 -2434 3720 2780 381 345 55 25 chr4 100599446 100599681 -83688981 - HAL1b LINE L1 -629 719 478 30 45 0 0 chr4 100599916 100599960 -83688702 + AT_rich Low_complexity Low_complexity 1 44 0 203 305 34 0 chr4 100600050 100600109 -83688553 + L2 LINE L2 3009 3069 -244 245 175 119 32 chr4 100600114 100600240 -83688422 + Charlie1 DNA MER1_type 2493 2629 -132 22 35 0 0 chr4 100600250 100600279 -83688383 + AT_rich Low_complexity Low_complexity 1 29 0 2422 76 0 3 chr4 100600385 100600686 -83687976 - AluY SINE Alu -11 300 1 17089 190 24 17 chr4 100601507 100602130 -83686532 - L1PA15 LINE L1 0 7603 6986 2123 150 19 6 chr4 100602130 100602489 -83686173 - THE1B LTR MaLR 0 364 1 9008 117 67 43 chr4 100602489 100602568 -83686094 - THE1B-int LTR MaLR 0 1580 1504 1928 168 7 0 chr4 100602568 100602866 -83685796 - AluSx SINE Alu -12 300 1 9008 117 67 43 chr4 100602866 100604329 -83684333 - THE1B-int LTR MaLR -76 1504 1 2150 158 17 8 chr4 100604329 100604690 -83683972 - THE1B LTR MaLR 0 364 1 17089 190 24 17 chr4 100604690 100611086 -83677576 - L1PA15 LINE L1 -616 6987 1 1783 254 37 4 chr4 100611155 100611695 -83676967 - L1MD3 LINE L1 -12 7983 7318 343 171 7 18 chr4 100611695 100611768 -83676894 - MLT1F1 LTR MaLR -442 125 66 4967 239 84 21 chr4 100611811 100612962 -83675700 + MER45R DNA AcHobo 41 1303 -278 1719 168 10 0 chr4 100612962 100613259 -83675403 + AluJb SINE Alu 1 300 -12 4967 239 84 21 chr4 100613259 100613557 -83675105 + MER45R DNA AcHobo 1303 1581 0 273 196 0 0 chr4 100613571 100613627 -83675035 + (CA)n Simple_repeat Simple_repeat 2 57 0 2457 149 32 2 chr4 100614634 100615076 -83673586 + L1MA9 LINE L1 5852 6306 -6 22 0 0 0 chr4 100615173 100615195 -83673467 + AT_rich Low_complexity Low_complexity 1 22 0 354 290 121 48 chr4 100615474 100615681 -83672981 - MIR SINE MIR -13 249 28 228 224 0 0 chr4 100615875 100615924 -83672738 + GA-rich Low_complexity Low_complexity 2 50 0 244 173 19 0 chr4 100616224 100616276 -83672386 + MER91B DNA MER1_type 78 130 -60 1066 198 21 8 chr4 100617169 100617407 -83671255 + L1MC2 LINE L1 5348 5588 -2454 1368 82 0 6 chr4 100617409 100617714 -83670948 + (TTC)n Simple_repeat Simple_repeat 1 483 0 6586 72 12 0 chr4 100617714 100618607 -83670055 - L1PA6 LINE L1 -26 6128 5227 864 55 0 0 chr4 100618611 100618720 -83669942 - L1PA6 LINE L1 -1339 4807 4699 * 3153 176 49 56 chr4 100618715 100619225 -83669437 + L1MC2 LINE L1 5588 6093 -251 1844 152 3 16 chr4 100619225 100619540 -83669122 + AluSq SINE Alu 1 311 -2 3153 176 49 56 chr4 100619540 100619779 -83668883 + L1MC2 LINE L1 6093 6332 -12 29 60 0 0 chr4 100620551 100620601 -83668061 + AT_rich Low_complexity Low_complexity 1 50 0 22 80 0 0 chr4 100620672 100620722 -83667940 + AT_rich Low_complexity Low_complexity 1 50 0 24 0 0 0 chr4 100620768 100620792 -83667870 + AT_rich Low_complexity Low_complexity 1 24 0 407 260 128 30 chr4 100620914 100621059 -83667603 - L1MB8 LINE L1 -14 6164 6035 3767 146 34 3 chr4 100621059 100621729 -83666933 - L1MA4 LINE L1 -5 6295 5605 407 260 128 30 chr4 100621729 100621848 -83666814 - L1MB8 LINE L1 -143 6035 5874 * 3077 229 22 55 chr4 100621840 100622786 -83665876 - L1MA4 LINE L1 -1 6299 5385 613 232 19 77 chr4 100622797 100623056 -83665606 - L1MB8 LINE L1 -978 5168 4925 183 337 22 22 chr4 100623252 100623341 -83665321 + L2 LINE L2 3184 3272 0 433 266 135 23 chr4 100623391 100623597 -83665065 + MIR SINE MIR 3 244 -18 200 258 32 0 chr4 100623620 100623682 -83664980 - MIR3 SINE MIR -52 156 93 776 229 60 5 chr4 100623695 100623910 -83664752 + MIR SINE MIR 27 256 -6 1537 266 38 8 chr4 100623949 100624456 -83664206 - L1MB8 LINE L1 -1217 4929 4408 2280 122 28 6 chr4 100624499 100624859 -83663803 - L1PB1 LINE L1 -1 6150 5783 218 227 0 0 chr4 100624860 100624904 -83663758 + (TA)n Simple_repeat Simple_repeat 1 44 0 357 231 12 6 chr4 100624930 100625099 -83663563 + (TA)n Simple_repeat Simple_repeat 1 170 0 3451 101 38 1 chr4 100625144 100625738 -83662924 - L1PB1 LINE L1 -359 5792 5179 2593 203 4 5 chr4 100625738 100626301 -83662361 + L1PB1 LINE L1 4628 5189 -957 1851 252 77 28 chr4 100626370 100627203 -83661459 - L1MB8 LINE L1 -2982 3164 2291 2285 98 3 0 chr4 100627444 100627750 -83660912 - AluY SINE Alu -4 307 1 380 311 113 11 chr4 100627914 100628131 -83660531 - L2 LINE L2 -255 3017 2784 263 296 23 0 chr4 100628490 100628578 -83660084 + MLT1K LTR MaLR 497 586 -2 200 403 0 16 chr4 100629134 100629258 -83659404 + L2 LINE L2 2228 2349 -965 371 366 55 24 chr4 100629341 100629633 -83659029 + L2 LINE L2 2562 2862 -452 254 111 0 0 chr4 100630897 100630942 -83657720 - LTR66 LTR ERVL -172 438 394 191 167 24 0 chr4 100631137 100631179 -83657483 + GA-rich Low_complexity Low_complexity 2 44 0 21 0 0 0 chr4 100631879 100631900 -83656762 + AT_rich Low_complexity Low_complexity 1 21 0 2330 58 0 26 chr4 100633311 100633622 -83655040 + AluY SINE Alu 1 303 -8 216 200 0 0 chr4 100634826 100634881 -83653781 + (TA)n Simple_repeat Simple_repeat 1 55 0 21 0 0 0 chr4 100634976 100634997 -83653665 + AT_rich Low_complexity Low_complexity 1 21 0 245 285 61 0 chr4 100635059 100635224 -83653438 - L1M4c LINE L1 -3617 3340 3166 225 0 0 0 chr4 100635386 100635411 -83653251 + (CA)n Simple_repeat Simple_repeat 2 26 0 436 49 49 12 chr4 100635444 100635525 -83653137 + (TA)n Simple_repeat Simple_repeat 1 84 0 797 275 37 46 chr4 100635621 100637092 -83651570 - L1M4c LINE L1 -4053 3085 1190 185 0 40 0 chr4 100637101 100637126 -83651536 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 408 71 0 0 chr4 100637244 100637300 -83651362 + (TG)n Simple_repeat Simple_repeat 2 57 0 322 332 97 22 chr4 100637667 100637893 -83650769 - L1M4c LINE L1 -6606 253 11 208 180 60 0 chr4 100639856 100639906 -83648756 + T-rich Low_complexity Low_complexity 1 53 0 8170 96 9 0 chr4 100640214 100642175 -83646487 + L1PA7 LINE L1 4153 6151 -3 25 31 0 0 chr4 100642183 100642215 -83646447 + AT_rich Low_complexity Low_complexity 1 32 0 1243 197 0 0 chr4 100642912 100643166 -83645496 + L1MA4 LINE L1 6043 6296 -4 25 65 0 0 chr4 100643199 100643245 -83645417 + AT_rich Low_complexity Low_complexity 1 46 0 1754 144 100 5 chr4 100643447 100643837 -83644825 - L1MA7 LINE L1 0 6291 5865 22 80 0 0 chr4 100644017 100644067 -83644595 + AT_rich Low_complexity Low_complexity 1 50 0 740 321 84 29 chr4 100644148 100644625 -83644037 + MLT1J LTR MaLR 1 503 -8 21 0 0 0 chr4 100646345 100646366 -83642296 + AT_rich Low_complexity Low_complexity 1 21 0 486 200 33 25 chr4 100647900 100648020 -83640642 + FLAM_A SINE Alu 2 122 -11 39 50 0 0 chr4 100648190 100648250 -83640412 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr4 100648885 100648906 -83639756 + AT_rich Low_complexity Low_complexity 1 21 0 3212 263 47 11 chr4 100649637 100650660 -83638002 + L1MEc LINE L1 36 947 -5270 204 288 24 106 chr4 100650707 100650877 -83637785 + MIR SINE MIR 106 261 -1 182 310 50 30 chr4 100650872 100650972 -83637690 + L2 LINE L2 2716 2817 -497 * 1421 191 69 74 chr4 100651094 100651486 -83637176 + MLT1B LTR MaLR 1 390 0 202 311 22 56 chr4 100652641 100652731 -83635931 + L2 LINE L2 3200 3286 -27 252 226 19 0 chr4 100652813 100652866 -83635796 + CT-rich Low_complexity Low_complexity 1 54 0 210 150 0 0 chr4 100652962 100653002 -83635660 + (TTCTCC)n Simple_repeat Simple_repeat 3 42 0 185 196 22 0 chr4 100653032 100653078 -83635584 + (TTG)n Simple_repeat Simple_repeat 2 48 0 1196 276 38 45 chr4 100654136 100654585 -83634077 + LTR16A1 LTR ERVL 11 456 -1 279 167 0 0 chr4 100654692 100654740 -83633922 + MIR SINE MIR 105 152 -110 329 284 28 18 chr4 100654822 100654931 -83633731 - L2 LINE L2 0 3313 3204 213 393 45 18 chr4 100655042 100655154 -83633508 - MIR SINE MIR -56 152 38 218 200 0 0 chr4 100655926 100655976 -83632686 + A-rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr4 100656070 100656092 -83632570 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr4 100658581 100658620 -83630042 + AT_rich Low_complexity Low_complexity 1 39 0 1165 281 102 58 chr4 100659507 100660006 -83628656 - MLT1F1 LTR MaLR -8 559 14 2268 108 3 0 chr4 100661975 100662282 -83626380 + AluSp SINE Alu 1 308 -5 234 211 96 0 chr4 100662335 100662387 -83626275 + L2 LINE L2 3216 3272 0 256 221 0 21 chr4 100662404 100662499 -83626163 + GA-rich Low_complexity Low_complexity 3 95 0 1070 325 70 40 chr4 100662549 100662640 -83626022 + L2 LINE L2 1994 2081 -1233 231 36 0 0 chr4 100662640 100662668 -83625994 + (TC)n Simple_repeat Simple_repeat 1 28 0 1070 325 70 40 chr4 100662668 100663223 -83625439 + L2 LINE L2 2081 2659 -655 240 240 0 0 chr4 100663224 100663274 -83625388 - LTR33A LTR ERVL 0 523 474 361 393 41 12 chr4 100663652 100663894 -83624768 + L2 LINE L2 2698 2946 -368 402 267 157 16 chr4 100663993 100664184 -83624478 + L2 LINE L2 3095 3312 -1 844 370 33 17 chr4 100664504 100664964 -83623698 - L3 LINE CR1 -5 1572 1106 572 247 146 11 chr4 100664978 100665156 -83623506 - MLT1H LTR MaLR -2 547 346 2028 304 41 12 chr4 100665372 100666106 -83622556 - ERVL LTR ERVL -455 5309 4555 517 301 72 4 chr4 100666104 100666340 -83622322 - ERVL LTR ERVL -2791 2973 2722 * 1233 209 114 19 chr4 100666349 100666515 -83622147 - L1M3f LINE L1 -4980 348 199 387 0 0 0 chr4 100666515 100666558 -83622104 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1233 209 114 19 chr4 100666558 100666706 -83621956 - L1M3f LINE L1 -5129 199 4 14129 28 0 0 chr4 100668996 100671443 -83617219 - L1PA4 LINE L1 -3 6152 3706 495 275 36 7 chr4 100671694 100671832 -83616830 - MIR SINE MIR -2 260 119 772 253 55 13 chr4 100671847 100672159 -83616503 + HsTC2 DNA Tc2 1572 1896 -2 226 313 111 39 chr4 100672558 100672766 -83615896 + L2 LINE L2 3086 3308 -5 584 328 48 12 chr4 100672873 100673123 -83615539 + MIR SINE MIR 2 260 -2 843 318 62 44 chr4 100673146 100673533 -83615129 - LTR33 LTR ERVL -3 518 125 8407 32 0 0 chr4 100673594 100674627 -83614035 - L1P LINE L1 -2208 3938 2906 269 51 26 0 chr4 100675187 100675226 -83613436 + (TC)n Simple_repeat Simple_repeat 1 40 0 27 49 0 0 chr4 100675754 100675795 -83612867 + AT_rich Low_complexity Low_complexity 1 41 0 1130 170 41 9 chr4 100677279 100677497 -83611165 - L1PB4 LINE L1 0 6156 5932 30 0 0 0 chr4 100679358 100679388 -83609274 + AT_rich Low_complexity Low_complexity 1 30 0 7485 31 0 0 chr4 100679388 100680442 -83608220 - L1PA3 LINE L1 0 6155 5109 238 296 113 0 chr4 100680514 100680629 -83608033 - L2 LINE L2 -691 2623 2496 305 155 17 0 chr4 100681101 100681159 -83607503 - L1PB4 LINE L1 0 6156 6098 668 261 143 20 chr4 100681736 100682093 -83606569 - HAL1 LINE L1 -81 2426 2026 250 266 40 89 chr4 100682288 100682412 -83606250 - HAL1 LINE L1 -580 1927 1810 266 234 135 81 chr4 100682472 100683040 -83605622 - HAL1 LINE L1 -837 1670 1063 2224 115 0 0 chr4 100683207 100683503 -83605159 + AluSc SINE Alu 1 296 -13 386 366 63 21 chr4 100683671 100683955 -83604707 - HAL1 LINE L1 -1766 741 446 680 332 42 26 chr4 100684018 100684401 -83604261 - MLT1I LTR MaLR 0 409 21 23 54 0 0 chr4 100686779 100686816 -83601846 + AT_rich Low_complexity Low_complexity 1 37 0 198 143 0 0 chr4 100688260 100688295 -83600367 + (TG)n Simple_repeat Simple_repeat 2 36 0 2635 198 14 10 chr4 100688594 100689094 -83599568 - MER89 LTR ERV1 0 559 58 598 200 0 0 chr4 100689103 100689223 -83599439 - FLAM_A SINE Alu -13 129 10 351 172 0 0 chr4 100689262 100689320 -83599342 - MER89 LTR ERV1 -500 59 2 2163 114 0 10 chr4 100690656 100690963 -83597699 + AluSx SINE Alu 1 304 -8 471 300 72 11 chr4 100691853 100692033 -83596629 - MIR SINE MIR -14 248 58 207 285 85 23 chr4 100692039 100692169 -83596493 + L2 LINE L2 3112 3249 -64 3118 173 5 5 chr4 100692788 100693377 -83595285 - L1MA5 LINE L1 0 6300 5712 25 75 0 0 chr4 100693414 100693467 -83595195 + AT_rich Low_complexity Low_complexity 1 53 0 23 33 0 0 chr4 100693932 100693962 -83594700 + AT_rich Low_complexity Low_complexity 1 30 0 328 338 22 29 chr4 100694330 100694469 -83594193 - L2 LINE L2 0 3313 3176 22 0 0 0 chr4 100694583 100694605 -83594057 + AT_rich Low_complexity Low_complexity 1 22 0 317 333 51 0 chr4 100695474 100695591 -83593071 - L2 LINE L2 0 3313 3191 2393 62 3 7 chr4 100695645 100695951 -83592711 + AluY SINE Alu 1 305 -6 369 0 0 0 chr4 100697203 100697244 -83591418 + (CA)n Simple_repeat Simple_repeat 1 41 0 320 376 30 0 chr4 100697615 100697748 -83590914 + MIR SINE MIR 66 202 -60 279 0 0 0 chr4 100697930 100697961 -83590701 + (CA)n Simple_repeat Simple_repeat 2 32 0 25 0 0 0 chr4 100698437 100698462 -83590200 + AT_rich Low_complexity Low_complexity 1 25 0 565 279 89 75 chr4 100699837 100700274 -83588388 - LTR16A1 LTR ERVL -12 445 3 23 0 0 0 chr4 100700353 100700376 -83588286 + AT_rich Low_complexity Low_complexity 1 23 0 261 130 0 0 chr4 100700457 100700503 -83588159 - MADE1 DNA Mariner 0 80 35 3134 105 24 105 chr4 100700685 100701316 -83587346 - L1PB1 LINE L1 -2 6149 5570 544 45 0 0 chr4 100701316 100701383 -83587279 + L1P1 LINE L1 5591 5657 -498 2031 192 36 2 chr4 100701483 100701895 -83586767 - L1 LINE L1 -1980 4166 3741 812 254 60 76 chr4 100701895 100702277 -83586385 + MER20B DNA MER1_type 44 419 -364 253 325 51 0 chr4 100702302 100702419 -83586243 - MER20B DNA MER1_type -1 782 660 23 0 0 0 chr4 100702584 100702607 -83586055 + AT_rich Low_complexity Low_complexity 1 23 0 17827 109 8 10 chr4 100702779 100705199 -83583463 - L1P LINE L1 -2230 3916 1500 2008 114 3 46 chr4 100705199 100705523 -83583139 - AluSg SINE Alu 0 310 1 17827 109 8 10 chr4 100705523 100705846 -83582816 - L1P LINE L1 -4646 1500 1178 10168 91 24 2 chr4 100705848 100708045 -83580617 + L1PA7 LINE L1 3931 6151 -3 187 216 39 20 chr4 100708071 100708122 -83580540 + L2 LINE L2 3184 3235 -78 433 360 33 21 chr4 100708291 100708624 -83580038 - ERVL LTR ERVL -384 5380 5044 24 0 0 0 chr4 100709108 100709132 -83579530 + AT_rich Low_complexity Low_complexity 1 24 0 2509 159 57 19 chr4 100709854 100710325 -83578337 - LTR45B LTR ERV1 0 489 1 1016 189 20 134 chr4 100711214 100711627 -83577035 + MLT1A1 LTR MaLR 2 426 0 210 286 221 13 chr4 100712051 100712128 -83576534 - L2 LINE L2 -32 3240 3148 21 36 0 0 chr4 100712168 100712196 -83576466 + AT_rich Low_complexity Low_complexity 1 28 0 211 328 72 40 chr4 100712230 100712355 -83576307 + L2 LINE L2 3144 3272 0 24 67 0 0 chr4 100712357 100712402 -83576260 + AT_rich Low_complexity Low_complexity 1 45 0 340 330 33 10 chr4 100712680 100712881 -83575781 + L1ME2 LINE L1 5439 5644 -477 292 281 82 7 chr4 100712975 100713110 -83575552 + L1ME2 LINE L1 5755 5899 -222 2139 98 0 3 chr4 100714077 100714383 -83574279 - AluSx SINE Alu 0 305 1 414 249 41 71 chr4 100714532 100714701 -83573961 + L1ME2 LINE L1 5956 6119 -45 1185 227 68 0 chr4 100714820 100715098 -83573564 - L1MB4 LINE L1 -61 6119 5823 1679 174 25 30 chr4 100715111 100715473 -83573189 - L1MC1 LINE L1 -14 6319 5960 251 103 0 0 chr4 100715481 100715520 -83573142 - L1MA5 LINE L1 -4 6296 6258 3190 192 14 55 chr4 100715525 100715692 -83572970 - L1MC1 LINE L1 -373 5960 5788 3015 111 7 4 chr4 100715692 100716142 -83572520 - L1PA13 LINE L1 -3 6160 5710 3190 192 14 55 chr4 100716142 100716756 -83571906 - L1MC1 LINE L1 -545 5788 5211 22 0 0 0 chr4 100717594 100717616 -83571046 + AT_rich Low_complexity Low_complexity 1 22 0 346 331 147 46 chr4 100717781 100718158 -83570504 - L2 LINE L2 -277 3036 2616 291 224 0 0 chr4 100718158 100718234 -83570428 + GA-rich Low_complexity Low_complexity 2 77 0 258 322 35 0 chr4 100718846 100718961 -83569701 - L1MC4 LINE L1 -156 7886 7768 825 244 99 78 chr4 100718964 100719410 -83569252 - L1MC4 LINE L1 -1138 6904 6450 4353 76 13 18 chr4 100719585 100720201 -83568461 + L1PA7 LINE L1 5529 6141 -13 306 299 92 98 chr4 100720725 100721083 -83567579 + MLT1K LTR MaLR 43 398 -190 695 69 10 0 chr4 100721121 100721223 -83567439 + (TAGA)n Simple_repeat Simple_repeat 2 104 0 260 284 95 59 chr4 100721604 100721773 -83566889 - L2 LINE L2 -846 2468 2294 * 568 295 59 30 chr4 100721763 100722000 -83566662 + MIR SINE MIR 19 262 0 * 3454 295 61 25 chr4 100721997 100723367 -83565295 - L2 LINE L2 -730 2584 1165 2327 174 65 33 chr4 100723482 100723905 -83564757 + MLT2B2 LTR ERVL 37 478 -37 338 0 24 0 chr4 100723905 100723947 -83564715 + (CA)n Simple_repeat Simple_repeat 1 43 0 2327 174 65 33 chr4 100723947 100723982 -83564680 + MLT2B2 LTR ERVL 478 510 -5 207 0 0 0 chr4 100724242 100724265 -83564397 + (CA)n Simple_repeat Simple_repeat 2 24 0 34 24 0 0 chr4 100724334 100724375 -83564287 + AT_rich Low_complexity Low_complexity 1 41 0 2054 141 3 0 chr4 100725534 100725832 -83562830 - AluSq SINE Alu -14 299 1 971 292 105 33 chr4 100726251 100726899 -83561763 + L2 LINE L2 2601 3313 0 643 313 134 26 chr4 100727283 100728477 -83560185 - L1ME3A LINE L1 -97 6007 4682 338 281 35 0 chr4 100728579 100728693 -83559969 - L1ME3A LINE L1 -1572 4508 4391 608 304 86 32 chr4 100729151 100729983 -83558679 - L1ME LINE L1 -4791 1291 537 421 325 152 12 chr4 100730012 100730341 -83558321 - L1ME LINE L1 -5630 440 66 708 264 50 46 chr4 100730398 100730815 -83557847 - L1MCc LINE L1 -4899 1524 1129 207 0 0 0 chr4 100730971 100730994 -83557668 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 39 64 0 18 chr4 100731862 100731893 -83556769 + AT_rich Low_complexity Low_complexity 1 31 -77 512 124 11 0 chr4 100731893 100731982 -83556680 - L1PB1 LINE L1 -5 6146 6057 39 64 0 18 chr4 100731982 100732002 -83556660 + AT_rich Low_complexity Low_complexity 31 50 -58 2976 154 27 8 chr4 100732002 100732527 -83556135 - L1PA13 LINE L1 -7 6156 5622 604 219 101 36 chr4 100732337 100732556 -83556106 - L1MB8 LINE L1 -353 5825 5593 39 64 0 18 chr4 100732527 100732584 -83556078 + AT_rich Low_complexity Low_complexity 50 108 0 * 21 36 0 0 chr4 100732916 100732944 -83555718 + AT_rich Low_complexity Low_complexity 1 28 0 281 254 131 8 chr4 100733075 100733197 -83555465 + LTR41 LTR ERVL 1 137 -636 425 268 58 107 chr4 100733243 100733571 -83555091 + LTR41 LTR ERVL 351 662 -111 198 233 19 10 chr4 100734496 100734599 -83554063 + (TA)n Simple_repeat Simple_repeat 2 105 0 208 250 36 107 chr4 100734923 100735007 -83553655 - L2 LINE L2 0 3272 3195 21 36 0 0 chr4 100735153 100735181 -83553481 + AT_rich Low_complexity Low_complexity 1 28 0 365 302 10 0 chr4 100736268 100736364 -83552298 + MER5A DNA MER1_type 13 109 -80 215 250 56 83 chr4 100736798 100736870 -83551792 + MIR SINE MIR 34 103 -105 22 0 0 0 chr4 100736946 100736968 -83551694 + AT_rich Low_complexity Low_complexity 1 22 0 295 57 0 0 chr4 100737407 100737442 -83551220 - L1P LINE L1 -1182 4964 4930 1207 45 0 13 chr4 100737446 100737603 -83551059 + L1PA5 LINE L1 6000 6154 0 1203 276 46 42 chr4 100737889 100738364 -83550298 + L3b LINE CR1 1102 1578 -5 264 122 0 0 chr4 100739385 100739426 -83549236 + (T)n Simple_repeat Simple_repeat 1 41 0 475 297 130 5 chr4 100739980 100740165 -83548497 + MIR SINE MIR 41 248 -14 342 318 132 54 chr4 100741213 100741654 -83547008 + L2 LINE L2 2838 3312 -1 21 0 0 0 chr4 100741851 100741872 -83546790 + AT_rich Low_complexity Low_complexity 1 21 0 2136 59 0 7 chr4 100742226 100742521 -83546141 + AluY SINE Alu 23 311 0 285 29 0 0 chr4 100742970 100743004 -83545658 + (TC)n Simple_repeat Simple_repeat 2 35 0 * 324 0 0 0 chr4 100743003 100743039 -83545623 + (TG)n Simple_repeat Simple_repeat 1 36 0 198 0 0 0 chr4 100743038 100743060 -83545602 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 229 338 169 10 chr4 100743070 100743271 -83545391 + MIR SINE MIR 9 241 -21 261 0 0 0 chr4 100743367 100743396 -83545266 + (CA)n Simple_repeat Simple_repeat 2 30 0 218 245 0 0 chr4 100744127 100744180 -83544482 + (TGG)n Simple_repeat Simple_repeat 3 55 0 28 29 0 0 chr4 100745073 100745108 -83543554 + AT_rich Low_complexity Low_complexity 1 35 0 196 89 22 44 chr4 100746054 100746099 -83542563 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 15625 211 23 16 chr4 100746178 100747895 -83540767 - L1PA15 LINE L1 -4 6812 5109 2481 11 0 14 chr4 100747895 100748182 -83540480 - AluYb8 SINE Alu -3 315 33 15625 211 23 16 chr4 100748182 100752006 -83536656 - L1PA15 LINE L1 -1707 5109 1224 2458 308 66 29 chr4 100751977 100752919 -83535743 - L1PA15 LINE L1 -5810 977 1 * 6372 240 42 60 chr4 100752920 100755615 -83533047 + L1 LINE L1 2753 5398 -748 28952 123 14 13 chr4 100755617 100760303 -83528359 + L1P LINE L1 667 5358 -788 931 167 28 0 chr4 100760303 100760480 -83528182 + L1MA1 LINE L1 6118 6302 0 5433 213 48 14 chr4 100760497 100762585 -83526077 + L1MC1 LINE L1 4154 6316 -17 250 276 9 19 chr4 100762586 100762691 -83525971 + (TA)n Simple_repeat Simple_repeat 2 105 0 24 32 0 0 chr4 100762927 100762958 -83525704 + AT_rich Low_complexity Low_complexity 1 31 0 24 77 0 0 chr4 100763006 100763058 -83525604 + AT_rich Low_complexity Low_complexity 1 52 0 23 33 0 0 chr4 100763132 100763162 -83525500 + AT_rich Low_complexity Low_complexity 1 30 0 324 297 20 27 chr4 100763540 100763688 -83524974 + L1ME LINE L1 5296 5442 -722 325 295 0 31 chr4 100763764 100763893 -83524769 + L1ME LINE L1 5505 5629 -492 2156 121 0 3 chr4 100764290 100764624 -83524038 + AluSx SINE Alu 1 333 0 221 325 15 42 chr4 100766393 100766494 -83522168 + MER5A DNA MER1_type 45 136 -42 268 291 202 41 chr4 100766516 100766808 -83521854 + L2 LINE L2 2140 2478 -836 1961 182 6 0 chr4 100767827 100768162 -83520500 + MER1B DNA MER1_type 1 337 0 1209 288 67 23 chr4 100768358 100769085 -83519577 - L1ME3 LINE L1 -283 6273 5521 24 32 0 0 chr4 100769164 100769195 -83519467 + AT_rich Low_complexity Low_complexity 1 31 0 337 275 12 0 chr4 100769342 100769422 -83519240 - L2 LINE L2 -4 3309 3229 787 295 147 39 chr4 100769446 100769642 -83519020 - L1ME3 LINE L1 -1319 5221 5048 381 22 0 0 chr4 100769642 100769688 -83518974 + (CA)n Simple_repeat Simple_repeat 2 47 0 787 295 147 39 chr4 100769688 100770608 -83518054 - L1ME3 LINE L1 -1492 5048 3984 2211 204 29 57 chr4 100770757 100771247 -83517415 - MER70B LTR ERVL -102 476 1 263 197 7 80 chr4 100771305 100771442 -83517220 + T-rich Low_complexity Low_complexity 6 132 0 569 307 80 7 chr4 100771459 100771908 -83516754 - L1ME3 LINE L1 -2970 3570 3089 454 358 80 7 chr4 100772013 100772315 -83516347 - L1ME3 LINE L1 -3582 2958 2635 854 0 95 0 chr4 100772749 100772875 -83515787 + CT-rich Low_complexity Low_complexity 5 142 0 2204 82 3 0 chr4 100772875 100773157 -83515505 - AluSp SINE Alu -30 283 1 456 323 99 42 chr4 100773284 100773744 -83514918 - L1ME3 LINE L1 -868 2033 1634 261 183 124 44 chr4 100773746 100773883 -83514779 - L1ME3 LINE L1 -5195 1335 1188 21 89 0 0 chr4 100775133 100775189 -83513473 + AT_rich Low_complexity Low_complexity 1 56 0 2272 168 26 2 chr4 100775347 100775765 -83512897 - MSTA LTR MaLR 0 428 1 21 0 0 0 chr4 100775878 100775899 -83512763 + AT_rich Low_complexity Low_complexity 1 21 0 187 330 11 55 chr4 100776656 100776747 -83511915 - MIR SINE MIR -120 142 56 21 36 0 0 chr4 100777354 100777382 -83511280 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr4 100777482 100777521 -83511141 + AT_rich Low_complexity Low_complexity 1 39 0 326 322 166 0 chr4 100777810 100778009 -83510653 - MIR SINE MIR -13 249 18 327 166 0 23 chr4 100778622 100778839 -83509823 + AluJo SINE Alu 3 302 0 235 342 13 0 chr4 100779416 100779495 -83509167 - L2 LINE L2 -5 3267 3188 29 0 0 0 chr4 100779583 100779612 -83509050 + AT_rich Low_complexity Low_complexity 1 29 0 1309 243 35 68 chr4 100779966 100780709 -83507953 + L1 LINE L1 3735 4411 -1735 3797 186 70 18 chr4 100780710 100781140 -83507522 + L1MB8 LINE L1 5186 5592 -586 575 86 0 12 chr4 100781140 100781221 -83507441 + MADE1 DNA Mariner 1 80 0 3797 186 70 18 chr4 100781221 100781749 -83506913 + L1MB8 LINE L1 5592 6178 0 2095 323 167 13 chr4 100782135 100784043 -83504619 + L2 LINE L2 602 2796 -518 185 365 104 17 chr4 100787027 100787142 -83501520 + MIR SINE MIR 20 144 -64 1408 202 54 16 chr4 100787340 100787657 -83501005 - L1MB7 LINE L1 -13 6171 5843 23 33 0 0 chr4 100787985 100788015 -83500647 + AT_rich Low_complexity Low_complexity 1 30 0 280 212 15 0 chr4 100789944 100790010 -83498652 + L1 LINE L1 4408 4474 -1672 4505 190 61 4 chr4 100790154 100790635 -83498027 - L1MA7 LINE L1 -6 6285 5833 279 0 0 0 chr4 100790635 100790666 -83497996 + (TG)n Simple_repeat Simple_repeat 2 32 0 4505 190 61 4 chr4 100790666 100791380 -83497282 - L1MA7 LINE L1 -458 5833 5038 * 6624 189 29 7 chr4 100791371 100792758 -83495904 + L1MA7 LINE L1 3620 5036 -1110 675 314 147 13 chr4 100793062 100793518 -83495144 + L2 LINE L2 1756 2272 -1042 320 421 22 11 chr4 100793575 100793846 -83494816 + L2 LINE L2 2461 2734 -580 1659 246 48 19 chr4 100793854 100794338 -83494324 - MLT1D LTR MaLR -1 504 7 307 398 17 13 chr4 100794345 100794657 -83494005 + L2 LINE L2 2757 3068 -245 762 196 47 79 chr4 100795125 100795436 -83493226 + MER31B LTR ERV1 9 417 -49 320 337 12 0 chr4 100795652 100795738 -83492924 + L2 LINE L2 3225 3311 -2 198 0 0 0 chr4 100796355 100796377 -83492285 + (T)n Simple_repeat Simple_repeat 1 22 0 276 368 61 31 chr4 100796681 100797007 -83491655 + L2 LINE L2 1064 1399 -1915 1954 119 6 53 chr4 100797709 100798027 -83490635 - AluSx SINE Alu -9 303 1 200 156 0 22 chr4 100798093 100798138 -83490524 + L2 LINE L2 2220 2263 -1051 831 266 35 0 chr4 100798461 100798664 -83489998 + MER58A DNA MER1_type 1 210 -14 198 434 20 20 chr4 100798735 100798984 -83489678 - L2 LINE L2 -672 2642 2394 5221 119 50 11 chr4 100799693 100800711 -83487951 - L1PA13 LINE L1 0 6163 5110 2166 327 153 33 chr4 100800711 100802827 -83485835 - L2 LINE L2 -11 3302 923 367 333 29 10 chr4 100802841 100803045 -83485617 + L1MC3 LINE L1 1 208 -5837 1616 249 44 49 chr4 100803057 100803443 -83485219 + L1MC3 LINE L1 948 1329 -5235 381 22 0 0 chr4 100803443 100803489 -83485173 + (CA)n Simple_repeat Simple_repeat 2 47 0 1616 249 44 49 chr4 100803489 100803878 -83484784 + L1MC3 LINE L1 1329 1719 -4845 * 4950 166 45 11 chr4 100803863 100804371 -83484291 + L1MA9 LINE L1 5263 5752 -560 261 0 0 0 chr4 100804371 100804400 -83484262 + (TG)n Simple_repeat Simple_repeat 1 29 0 4950 166 45 11 chr4 100804400 100804906 -83483756 + L1MA9 LINE L1 5752 6312 0 567 256 108 51 chr4 100804945 100805297 -83483365 + L1MC3 LINE L1 1702 2084 -4491 * 638 264 99 20 chr4 100805294 100805695 -83482967 + L1MC3 LINE L1 2296 2764 -3947 2089 173 38 63 chr4 100805722 100806197 -83482465 + MER101 LTR ERV1 12 474 0 849 276 51 26 chr4 100806201 100806553 -83482109 + L1MC3 LINE L1 2863 3223 -3341 * 4877 257 40 35 chr4 100806538 100808519 -83480143 + L1MC3 LINE L1 3729 5720 -844 687 204 60 6 chr4 100808514 100808681 -83479981 + L1MC3 LINE L1 6097 6272 -1931 * 5784 101 36 9 chr4 100808679 100809634 -83479028 - L1PB1 LINE L1 -12 6139 5161 3070 238 22 5 chr4 100809627 100810403 -83478259 + L1MC3 LINE L1 6258 7046 -1157 * 338 292 44 9 chr4 100810400 100810513 -83478149 - L1MC3 LINE L1 -1078 6707 6591 * 254 160 0 0 chr4 100810513 100810563 -83478099 - LTR66 LTR ERVL -171 439 390 503 237 82 31 chr4 100810606 100810800 -83477862 + L1M4 LINE L1 5 208 -6334 * 4874 198 42 35 chr4 100810793 100811970 -83476692 + L1MC3 LINE L1 7018 8203 0 1475 159 78 4 chr4 100812102 100812373 -83476289 - MSTA LTR MaLR 0 428 138 247 410 8 0 chr4 100812817 100812934 -83475728 - LTR16A LTR ERVL -225 225 108 1632 263 93 102 chr4 100813073 100814551 -83474111 + L1M4c LINE L1 926 2390 -5073 3453 229 16 45 chr4 100814557 100815387 -83473275 + L1M4 LINE L1 22 827 -6738 2813 228 15 0 chr4 100815381 100816030 -83472632 + L1M4 LINE L1 3814 4472 -3093 * 2692 148 22 15 chr4 100816013 100817250 -83471412 + L1MA2 LINE L1 4920 6304 0 * 1191 259 71 55 chr4 100817259 100817331 -83471331 + L1M4c LINE L1 2468 2537 -5030 2312 65 3 17 chr4 100817331 100817624 -83471038 + AluY SINE Alu 3 291 -20 1191 259 71 55 chr4 100817624 100818409 -83470253 + L1M4c LINE L1 2537 3430 -4137 465 260 0 0 chr4 100818433 100818533 -83470129 + L1MB2 LINE L1 5688 5787 -384 1645 193 8 45 chr4 100818533 100818886 -83469776 - MER47A DNA MER2_type 0 366 27 1066 230 47 4 chr4 100818903 100819181 -83469481 + L1MB2 LINE L1 5804 6093 -78 353 162 0 0 chr4 100819180 100819248 -83469414 + L1P LINE L1 5266 5333 -823 * 5723 102 15 8 chr4 100819241 100820093 -83468569 + L1PB1 LINE L1 5280 6137 -14 2724 150 67 22 chr4 100820093 100820587 -83468075 - L1PB3 LINE L1 -133 6021 5506 1054 152 34 11 chr4 100820587 100820765 -83467897 + THE1B LTR MaLR 2 183 -181 758 119 8 8 chr4 100820774 100820900 -83467762 + L1PB3 LINE L1 6028 6153 -1 218 32 32 0 chr4 100822063 100822094 -83466568 + (ATG)n Simple_repeat Simple_repeat 1 32 0 265 339 61 9 chr4 100823660 100823775 -83464887 + MIR SINE MIR 10 130 -132 293 362 28 18 chr4 100824218 100824500 -83464162 + HsTC2 DNA Tc2 578 862 -1036 43130 42 4 3 chr4 100824514 100830658 -83458004 - L1PA4 LINE L1 -3 6152 4 906 301 47 31 chr4 100831117 100831439 -83457223 - LTR16A LTR ERVL -108 342 16 1081 224 75 22 chr4 100831532 100831854 -83456808 + L1MA10 LINE L1 5996 6334 0 746 294 26 38 chr4 100832347 100832420 -83456242 + MIR SINE MIR 1 73 -189 1954 181 59 33 chr4 100832420 100832841 -83455821 + MSTB1 LTR MaLR 1 432 0 746 294 26 38 chr4 100832841 100833032 -83455630 + MIR SINE MIR 73 262 0 346 317 92 64 chr4 100833410 100834022 -83454640 - L1MEc LINE L1 -5746 650 22 558 341 118 0 chr4 100834044 100834299 -83454363 + L2 LINE L2 1927 2211 -1103 1423 268 4 60 chr4 100834317 100834780 -83453882 + MLT2B1 LTR ERVL 44 480 -40 296 143 0 0 chr4 100834809 100834858 -83453804 + MLT2D LTR ERVL 366 414 0 573 302 115 22 chr4 100834859 100835137 -83453525 + L2 LINE L2 2225 2528 -786 1310 279 102 27 chr4 100835365 100836033 -83452629 - L1ME3 LINE L1 -22 6140 5424 2111 153 19 3 chr4 100836121 100836499 -83452163 + L1P LINE L1 2196 2579 -3567 10776 173 23 10 chr4 100836503 100838578 -83450084 + L1P LINE L1 3066 5167 -979 491 266 64 44 chr4 100838638 100838980 -83449682 - L1ME3 LINE L1 -1102 5044 4696 478 151 11 21 chr4 100839015 100839108 -83449554 + MLT2B2 LTR ERVL 422 513 -2 8668 192 34 8 chr4 100839193 100841889 -83446773 - L1PA15 LINE L1 -108 6057 3290 284 314 25 0 chr4 100841892 100842013 -83446649 + L1MD1 LINE L1 6092 6215 -27 22 0 0 0 chr4 100842057 100842079 -83446583 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr4 100842247 100842276 -83446386 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr4 100843485 100843517 -83445145 + AT_rich Low_complexity Low_complexity 1 32 0 37 90 0 0 chr4 100843543 100843643 -83445019 + AT_rich Low_complexity Low_complexity 1 100 0 1003 199 0 0 chr4 100843791 100843967 -83444695 - FAM SINE Alu 0 49 1 184 343 0 0 chr4 100844567 100844637 -83444025 - MIR SINE MIR -44 218 149 378 287 121 19 chr4 100845026 100845183 -83443479 - MIR SINE MIR -56 206 34 189 178 0 0 chr4 100846035 100846080 -83442582 + (TG)n Simple_repeat Simple_repeat 1 45 0 308 311 59 17 chr4 100847131 100847250 -83441412 + L2 LINE L2 3149 3272 0 5295 166 102 167 chr4 100847384 100849260 -83439402 + MER52A LTR ERV1 1 1755 0 384 242 23 70 chr4 100849885 100849923 -83438739 - MER5C DNA MER1_type -202 122 84 2017 131 3 29 chr4 100849923 100850236 -83438426 - AluSq SINE Alu -5 308 4 384 242 23 70 chr4 100850236 100850325 -83438337 - MER5C DNA MER1_type -240 84 1 229 191 43 0 chr4 100850599 100850646 -83438016 + L1MEd LINE L1 4 52 -6067 33 0 0 0 chr4 100850703 100850736 -83437926 + AT_rich Low_complexity Low_complexity 1 33 0 235 180 16 33 chr4 100850756 100850817 -83437845 + L1MC4 LINE L1 6660 6719 -1323 * 438 355 114 20 chr4 100850814 100851364 -83437298 + L1MEd LINE L1 112 713 -5406 1509 216 0 7 chr4 100853197 100853470 -83435192 + AluJb SINE Alu 12 282 -30 21 0 0 0 chr4 100853482 100853503 -83435159 + AT_rich Low_complexity Low_complexity 1 21 0 1149 314 199 35 chr4 100853910 100854729 -83433933 + L1MA3 LINE L1 18 970 -5893 377 295 38 59 chr4 100855051 100855475 -83433187 + L1MA3 LINE L1 764 1178 -5685 4524 242 42 26 chr4 100855564 100857201 -83431461 + L1MA3 LINE L1 1349 3086 -3776 4313 211 21 29 chr4 100857614 100858105 -83430557 + L1MA3 LINE L1 3044 3538 -3324 1542 130 153 0 chr4 100858105 100858359 -83430303 + AluSg SINE Alu 2 294 -6 4313 211 21 29 chr4 100858359 100858615 -83430047 + L1MA3 LINE L1 3538 3795 -3067 509 234 73 0 chr4 100858615 100858739 -83429923 + FLAM_C SINE Alu 1 133 0 4313 211 21 29 chr4 100858739 100859199 -83429463 + L1MA3 LINE L1 3795 4242 -2620 2912 107 0 0 chr4 100859200 100859582 -83429080 + MLT2A1 LTR ERVL 1 385 -59 180 0 0 0 chr4 100859582 100859602 -83429060 + (TA)n Simple_repeat Simple_repeat 2 21 0 231 239 0 0 chr4 100859603 100859649 -83429013 - AluJ/monomer SINE Alu -256 46 1 * 660 208 7 7 chr4 100859654 100859803 -83428859 - L1 LINE L1 -3071 3075 2927 489 76 0 0 chr4 100859803 100859869 -83428793 + (TA)n Simple_repeat Simple_repeat 2 67 0 255 28 111 0 chr4 100859869 100859905 -83428757 + MLT2A1 LTR ERVL 405 444 0 8998 158 23 11 chr4 100859905 100862651 -83426011 + L1MA3 LINE L1 4239 7019 -2 1720 137 77 21 chr4 100862684 100862969 -83425693 + AluSx SINE Alu 1 301 -11 4045 132 48 1 chr4 100863174 100863858 -83424804 + L1PB4 LINE L1 5428 6143 -13 24 53 0 0 chr4 100863886 100863924 -83424738 + AT_rich Low_complexity Low_complexity 1 38 0 1182 209 34 49 chr4 100864911 100865344 -83423318 + Charlie5 DNA MER1_type 1 417 -2195 260 211 0 0 chr4 100865349 100865401 -83423261 - MLT1F1 LTR MaLR 0 567 516 645 250 0 0 chr4 100865436 100865560 -83423102 - FLAM_A SINE Alu -9 124 1 1248 201 169 5 chr4 100865566 100865954 -83422708 + L1MD2 LINE L1 4759 5213 -933 235 182 26 52 chr4 100865962 100866039 -83422623 + L1MD2 LINE L1 5872 5946 -413 609 258 79 11 chr4 100866050 100866228 -83422434 + MER58A DNA MER1_type 1 190 -34 572 229 27 33 chr4 100866290 100866513 -83422149 + L1MA10 LINE L1 5954 6334 0 561 249 39 0 chr4 100866516 100866697 -83421965 + Charlie5 DNA MER1_type 732 919 -1693 824 354 16 31 chr4 100866709 100867005 -83421657 + L1PA13 LINE L1 788 1078 -6496 1945 135 128 13 chr4 100867005 100867389 -83421273 + MSTA LTR MaLR 1 428 0 824 354 16 31 chr4 100867389 100867476 -83421186 + L1PA13 LINE L1 1078 1165 -6409 365 286 26 22 chr4 100867610 100867794 -83420868 + L1PA13 LINE L1 2086 2298 -5276 3124 252 34 12 chr4 100868027 100869174 -83419488 + L1PA13 LINE L1 2182 3351 -4233 * 3162 174 44 2 chr4 100869172 100869930 -83418732 + L1PA15 LINE L1 4992 5783 -382 679 80 90 0 chr4 100869930 100870027 -83418635 + L1PA10 LINE L1 6056 6164 -4 2515 118 7 32 chr4 100870035 100870441 -83418221 + L1PA15 LINE L1 5769 6164 -1 21 71 0 0 chr4 100870491 100870533 -83418129 + AT_rich Low_complexity Low_complexity 1 42 0 1282 213 53 15 chr4 100870553 100870947 -83417715 + Charlie5 DNA MER1_type 2211 2619 0 189 94 0 0 chr4 100872581 100872613 -83416049 + (T)n Simple_repeat Simple_repeat 1 32 0 379 319 72 33 chr4 100873162 100873438 -83415224 + MER102b DNA MER1_type 40 326 -15 632 270 58 58 chr4 100874079 100874300 -83414362 + MLT1J LTR MaLR 2 225 -286 2035 163 102 0 chr4 100874300 100874692 -83413970 - MSTB1 LTR MaLR 0 432 1 632 270 58 58 chr4 100874692 100874748 -83413914 + MLT1J LTR MaLR 224 279 -232 28 0 0 0 chr4 100924987 100925015 -83363647 + AT_rich Low_complexity Low_complexity 1 28 0 2109 297 97 27 chr4 100925798 100926797 -83361865 + L2 LINE L2 2118 3171 -142 2140 100 40 0 chr4 100927013 100927132 -83361530 + AluY SINE Alu 1 114 -197 244 44 67 0 chr4 100927132 100927177 -83361485 + A-rich Low_complexity Low_complexity 2 49 0 2140 100 40 0 chr4 100927177 100927356 -83361306 + AluY SINE Alu 114 311 0 207 373 0 0 chr4 100927420 100927495 -83361167 - L2 LINE L2 -257 3015 2941 780 155 16 0 chr4 100927497 100927626 -83361036 + FRAM SINE Alu 1 129 -47 539 345 74 26 chr4 100927728 100928038 -83360624 - L2 LINE L2 -411 2903 2579 244 317 106 49 chr4 100928233 100928375 -83360287 + L2 LINE L2 3121 3270 -2 217 341 0 0 chr4 100928916 100928998 -83359664 + (CATATA)n Simple_repeat Simple_repeat 2 83 0 1616 85 48 22 chr4 100929878 100930150 -83358512 + L1PA13 LINE L1 5885 6163 0 21 71 0 0 chr4 100931286 100931328 -83357334 + AT_rich Low_complexity Low_complexity 1 42 0 180 77 0 0 chr4 100931465 100931491 -83357171 + (T)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr4 100931774 100931795 -83356867 + AT_rich Low_complexity Low_complexity 1 21 0 192 184 0 0 chr4 100933215 100933264 -83355398 + A-rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr4 100934518 100934539 -83354123 + AT_rich Low_complexity Low_complexity 1 21 0 213 178 0 0 chr4 100935225 100935270 -83353392 + T-rich Low_complexity Low_complexity 1 45 0 204 303 30 0 chr4 100937682 100937781 -83350881 + (CATATA)n Simple_repeat Simple_repeat 1 102 0 * 208 269 0 0 chr4 100937730 100937782 -83350880 + (TA)n Simple_repeat Simple_repeat 2 53 0 34 24 0 0 chr4 100939226 100939267 -83349395 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr4 100940551 100940581 -83348081 + AT_rich Low_complexity Low_complexity 1 30 0 28 61 0 0 chr4 100940770 100940819 -83347843 + AT_rich Low_complexity Low_complexity 1 49 0 230 221 0 12 chr4 100942008 100942094 -83346568 + (TA)n Simple_repeat Simple_repeat 2 86 0 532 171 0 16 chr4 100942794 100942917 -83345745 + CT-rich Low_complexity Low_complexity 4 124 0 21 0 0 0 chr4 100943038 100943059 -83345603 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 100943621 100943645 -83345017 + AT_rich Low_complexity Low_complexity 1 24 0 666 167 0 0 chr4 100943894 100944026 -83344636 + CT-rich Low_complexity Low_complexity 1 132 0 1932 153 0 10 chr4 100944323 100944631 -83344031 + AluSx SINE Alu 1 305 -7 215 200 0 33 chr4 100944742 100944802 -83343860 + (TATG)n Simple_repeat Simple_repeat 1 58 0 673 241 38 69 chr4 100945060 100945321 -83343341 + MER112 DNA MER1_type 2 254 -2 24 53 0 0 chr4 100946297 100946335 -83342327 + AT_rich Low_complexity Low_complexity 1 38 0 257 194 15 30 chr4 100947512 100947579 -83341083 - L1MA8 LINE L1 -4 6287 6222 264 59 0 0 chr4 100952587 100952621 -83336041 + (CCG)n Simple_repeat Simple_repeat 1 34 0 237 98 0 0 chr4 100952636 100952677 -83335985 + (GGA)n Simple_repeat Simple_repeat 2 42 0 454 235 10 27 chr4 100952835 100953417 -83335245 + CT-rich Low_complexity Low_complexity 1 572 0 456 274 102 27 chr4 100953543 100953729 -83334933 + L2 LINE L2 1276 1475 -1839 336 334 74 29 chr4 100954609 100954815 -83333847 + MIR SINE MIR 19 230 -32 241 326 31 20 chr4 100954896 100954994 -83333668 + L2 LINE L2 2174 2272 -1042 862 262 102 43 chr4 100955787 100956207 -83332455 - LTR33 LTR ERVL -20 501 57 375 323 77 73 chr4 100957262 100957522 -83331140 + MIR SINE MIR 2 262 0 2158 113 3 0 chr4 100957633 100957933 -83330729 + AluSq SINE Alu 1 301 -12 41 0 0 0 chr4 100957933 100957974 -83330688 + AT_rich Low_complexity Low_complexity 1 41 0 180 228 0 105 chr4 100958291 100958348 -83330314 + L2 LINE L2 3263 3313 0 205 104 0 62 chr4 100958684 100958732 -83329930 + (TTTTTA)n Simple_repeat Simple_repeat 3 47 0 655 361 45 0 chr4 100959284 100959528 -83329134 - MIR SINE MIR -6 256 2 189 314 0 0 chr4 100959880 100959931 -83328731 + L2 LINE L2 3228 3278 -35 315 306 16 48 chr4 100960115 100960239 -83328423 - L2 LINE L2 -16 3256 3137 503 291 103 19 chr4 100960883 100961096 -83327566 - MIR SINE MIR 0 262 32 2000 175 216 27 chr4 100961099 100961527 -83327135 - LTR48 LTR ERV1 0 787 441 258 32 0 0 chr4 100961527 100961558 -83327104 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2000 175 216 27 chr4 100961558 100961791 -83326871 - LTR48 LTR ERV1 -346 441 1 394 308 87 20 chr4 100961960 100962155 -83326507 - MIR SINE MIR -49 213 6 2070 113 3 10 chr4 100962205 100962682 -83325980 + AluY SINE Alu 1 475 0 1899 124 0 11 chr4 100962694 100963005 -83325657 + AluSx SINE Alu 3 310 0 910 307 131 15 chr4 100963007 100963404 -83325258 + LTR16B LTR ERVL 18 460 -4 365 332 80 35 chr4 100963649 100963935 -83324727 + HERV16 LTR ERVL 320 618 -4378 476 290 0 70 chr4 100963971 100964157 -83324505 + HERV16 LTR ERVL 858 1030 -3966 2306 85 0 0 chr4 100964196 100964490 -83324172 - AluY SINE Alu -17 294 1 469 238 185 21 chr4 100964500 100964689 -83323973 + LTR16B LTR ERVL 245 464 0 23 33 0 0 chr4 100965466 100965496 -83323166 + AT_rich Low_complexity Low_complexity 1 30 0 208 135 0 0 chr4 100966638 100966675 -83321987 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 928 320 84 29 chr4 100966738 100967284 -83321378 + MLT1K LTR MaLR 2 577 -11 566 231 98 22 chr4 100967709 100967934 -83320728 - L1MCc LINE L1 -5232 1709 1468 378 242 54 20 chr4 100967985 100968148 -83320514 - L1MCc LINE L1 -5889 533 22 772 325 47 10 chr4 100968216 100968622 -83320040 + Tigger8 DNA MER2_type 158 578 -88 32 43 0 0 chr4 100969830 100969876 -83318786 + AT_rich Low_complexity Low_complexity 1 46 0 22 56 0 0 chr4 100969952 100969988 -83318674 + AT_rich Low_complexity Low_complexity 1 36 0 30 45 0 0 chr4 100970500 100970544 -83318118 + AT_rich Low_complexity Low_complexity 1 44 0 2054 111 3 38 chr4 100970626 100970941 -83317721 + AluSx SINE Alu 1 304 -8 24 32 0 0 chr4 100971749 100971780 -83316882 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr4 100973706 100973728 -83314934 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 100974280 100974310 -83314352 + AT_rich Low_complexity Low_complexity 1 30 0 195 333 0 18 chr4 100975894 100975951 -83312711 + MER5A DNA MER1_type 122 177 -12 282 364 85 17 chr4 100976718 100977012 -83311650 + L1MEc LINE L1 91 404 -5992 647 262 43 0 chr4 100977393 100977557 -83311105 + MER58A DNA MER1_type 37 207 -17 1810 291 61 35 chr4 100977581 100979669 -83308993 + L1MEc LINE L1 591 2860 -3355 716 235 20 95 chr4 100979746 100980052 -83308610 + L1MEc LINE L1 4113 4395 -1820 21 36 0 0 chr4 100980246 100980274 -83308388 + AT_rich Low_complexity Low_complexity 1 28 0 1062 110 0 19 chr4 100980648 100980827 -83307835 + AluY SINE Alu 129 304 0 5160 177 39 21 chr4 100981510 100982550 -83306112 - L1MC1 LINE L1 0 6751 5694 350 242 99 0 chr4 100982566 100982657 -83306005 + L1MEc LINE L1 4356 4455 -1760 340 240 62 10 chr4 100982665 100982761 -83305901 - L1MC1 LINE L1 -1556 5008 4908 737 213 6 22 chr4 100982865 100983048 -83305614 - L1MC1 LINE L1 -5245 1319 1140 1481 107 5 0 chr4 100983050 100983266 -83305396 + L1MC1 LINE L1 2374 2590 -4991 * 3420 223 37 76 chr4 100983262 100984371 -83304291 - L1MC1 LINE L1 -4971 2094 1029 247 81 0 0 chr4 100984789 100984826 -83303836 + (TTTA)n Simple_repeat Simple_repeat 2 96 0 2233 84 0 3 chr4 100984826 100985110 -83303552 - AluY SINE Alu -1 319 1 287 298 66 16 chr4 100985440 100985561 -83303101 - MLT1J LTR MaLR -72 439 313 627 303 9 24 chr4 100985587 100985798 -83302864 - MLT1J LTR MaLR -295 216 9 240 333 26 0 chr4 100985804 100985882 -83302780 + MIR SINE MIR 68 147 -115 24 77 0 0 chr4 100986392 100986444 -83302218 + AT_rich Low_complexity Low_complexity 1 52 0 26 30 0 0 chr4 100989822 100989855 -83298807 + AT_rich Low_complexity Low_complexity 1 33 0 1033 304 72 41 chr4 100992741 100993426 -83295236 - L2 LINE L2 0 3313 2464 29 28 0 0 chr4 100993922 100993958 -83294704 + AT_rich Low_complexity Low_complexity 1 36 0 27 49 0 0 chr4 100994319 100994360 -83294302 + AT_rich Low_complexity Low_complexity 1 41 0 601 294 47 39 chr4 100996134 100996389 -83292273 - MIR SINE MIR -5 257 1 208 173 39 19 chr4 100996421 100996473 -83292189 + (TATAA)n Simple_repeat Simple_repeat 1 53 0 487 319 74 63 chr4 100996526 100997107 -83291555 + L2 LINE L2 2657 3313 0 252 328 126 22 chr4 100997281 100997464 -83291198 + MIR SINE MIR 40 241 -21 24 53 0 0 chr4 100998582 100998620 -83290042 + AT_rich Low_complexity Low_complexity 1 38 0 218 189 0 0 chr4 100999495 100999532 -83289130 + CT-rich Low_complexity Low_complexity 2 38 0 1351 180 82 19 chr4 101001467 101001768 -83286894 - AluJo SINE Alu 0 318 1 25 0 0 0 chr4 101002721 101002746 -83285916 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr4 101002824 101002848 -83285814 + AT_rich Low_complexity Low_complexity 1 24 0 219 250 0 0 chr4 101004629 101004681 -83283981 + CT-rich Low_complexity Low_complexity 2 53 0 208 130 0 65 chr4 101004738 101004784 -83283878 + (TGGGGG)n Simple_repeat Simple_repeat 2 44 0 200 182 0 0 chr4 101005738 101005771 -83282891 + CT-rich Low_complexity Low_complexity 3 35 0 23 0 0 0 chr4 101006745 101006768 -83281894 + AT_rich Low_complexity Low_complexity 1 23 0 2292 115 36 36 chr4 101007833 101008197 -83280465 + THE1B LTR MaLR 1 364 0 321 109 0 0 chr4 101008235 101008281 -83280381 + MADE1 DNA Mariner 1 46 -34 193 253 13 76 chr4 101008348 101008427 -83280235 - L2 LINE L2 -91 3222 3149 338 282 5 87 chr4 101008531 101008726 -83279936 - LTR33A LTR ERVL -5 518 340 296 291 80 40 chr4 101008954 101009129 -83279533 - LTR50 LTR ERVL -593 202 21 23 54 0 0 chr4 101009278 101009315 -83279347 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr4 101009581 101009602 -83279060 + AT_rich Low_complexity Low_complexity 1 21 0 2685 102 0 3 chr4 101010733 101011105 -83277557 - THE1C LTR MaLR 0 375 5 2522 95 17 0 chr4 101012687 101013035 -83275627 - L1PA10 LINE L1 -11 6157 5804 1117 116 6 0 chr4 101013035 101013207 -83275455 + L1P LINE L1 5190 5362 -784 396 309 1 10 chr4 101014208 101014395 -83274267 + MLT1J LTR MaLR 29 212 -197 245 331 107 75 chr4 101014583 101014967 -83273695 + L2 LINE L2 2893 3288 -25 451 278 12 58 chr4 101015030 101015203 -83273459 - L2 LINE L2 0 3313 3149 21 0 0 0 chr4 101016610 101016631 -83272031 + AT_rich Low_complexity Low_complexity 1 21 0 2872 143 19 37 chr4 101016697 101016798 -83271864 + L1MA8 LINE L1 5217 5318 -973 1486 176 55 17 chr4 101016798 101017088 -83271574 + AluJb SINE Alu 1 301 -11 2872 143 19 37 chr4 101017088 101017557 -83271105 + L1MA8 LINE L1 5318 5789 -502 227 190 17 17 chr4 101017562 101017620 -83271042 - LTR66 LTR ERVL -171 439 382 212 0 0 35 chr4 101017620 101017631 -83271031 + (GA)n Simple_repeat Simple_repeat 2 12 -17 2047 173 57 19 chr4 101017631 101018104 -83270558 + L1MA8 LINE L1 5797 6287 -4 212 0 0 35 chr4 101018104 101018121 -83270541 + (GA)n Simple_repeat Simple_repeat 12 29 0 1219 48 0 0 chr4 101018692 101018839 -83269823 - L1PA3 LINE L1 -4 6151 6005 24520 27 0 0 chr4 101018839 101022178 -83266484 + L1P1 LINE L1 2440 5778 -377 213 328 62 0 chr4 101022218 101022282 -83266380 + MER91A DNA MER1_type 117 184 -12 24 0 0 0 chr4 101022679 101022703 -83265959 + AT_rich Low_complexity Low_complexity 1 24 0 788 325 79 21 chr4 101023201 101023580 -83265082 + L2 LINE L2 883 1283 -2031 183 329 94 27 chr4 101023768 101023917 -83264745 + L2 LINE L2 3154 3312 -1 2093 119 0 26 chr4 101023921 101024223 -83264439 - AluSg SINE Alu -16 294 1 974 320 69 14 chr4 101024446 101024809 -83263853 - LTR16A LTR ERVL -8 442 60 180 77 0 0 chr4 101025118 101025144 -83263518 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 531 323 156 23 chr4 101025696 101026185 -83262477 - L2 LINE L2 -15 3298 2751 286 194 31 39 chr4 101026195 101026324 -83262338 + HAL1 LINE L1 973 1100 -1407 * 2366 166 105 43 chr4 101026316 101026921 -83261741 + L1MA9 LINE L1 5156 5929 -362 22149 44 18 0 chr4 101026921 101030447 -83258215 + L1PA5 LINE L1 2605 6146 -8 2366 166 105 43 chr4 101030447 101030815 -83257847 + L1MA9 LINE L1 5929 6272 -19 352 259 153 73 chr4 101030818 101031255 -83257407 + HAL1 LINE L1 1073 1544 -963 261 266 16 0 chr4 101031257 101031321 -83257341 - MLT1J2 LTR MaLR 0 450 386 1086 291 99 19 chr4 101031616 101032431 -83256231 + HAL1 LINE L1 1544 2461 -46 2139 189 20 52 chr4 101033158 101033401 -83255261 - MER44D DNA MER2_type -1882 605 326 3261 31 0 0 chr4 101033401 101033785 -83254877 + L1PA3 LINE L1 5767 6150 -5 2139 189 20 52 chr4 101033785 101033986 -83254676 - MER44D DNA MER2_type -2161 326 120 2229 132 8 19 chr4 101034157 101034536 -83254126 - THE1C LTR MaLR 0 375 1 25 65 0 0 chr4 101034789 101034835 -83253827 + AT_rich Low_complexity Low_complexity 1 46 0 578 175 94 50 chr4 101036449 101036609 -83252053 - MLT1A2 LTR MaLR -207 167 1 1795 271 79 30 chr4 101036639 101037008 -83251654 - L1ME3A LINE L1 -59 6111 5762 1779 126 0 0 chr4 101037008 101037278 -83251384 - L1PA13 LINE L1 -3 6160 5891 1795 271 79 30 chr4 101037278 101038824 -83249838 - L1ME3A LINE L1 -408 5762 4055 363 251 153 12 chr4 101038855 101039018 -83249644 - L1ME3A LINE L1 -2167 3979 3794 233 291 39 0 chr4 101039094 101039197 -83249465 - L1ME3A LINE L1 -2497 3649 3543 365 120 0 13 chr4 101039832 101039907 -83248755 + (CCG)n Simple_repeat Simple_repeat 2 75 0 183 42 0 0 chr4 101039977 101040001 -83248661 + (CGG)n Simple_repeat Simple_repeat 3 26 0 219 302 21 0 chr4 101040281 101040377 -83248285 + G-rich Low_complexity Low_complexity 4 101 0 21 36 0 0 chr4 101041502 101041530 -83247132 + AT_rich Low_complexity Low_complexity 1 28 0 219 238 0 16 chr4 101043150 101043213 -83245449 + GA-rich Low_complexity Low_complexity 2 63 0 208 53 53 0 chr4 101043337 101043375 -83245287 + CT-rich Low_complexity Low_complexity 1 40 0 210 118 0 0 chr4 101043800 101043834 -83244828 + (TG)n Simple_repeat Simple_repeat 2 35 0 552 341 53 12 chr4 101045480 101045726 -83242936 - MIR SINE MIR 0 262 7 402 317 116 47 chr4 101046411 101046818 -83241844 - MLT1J1 LTR MaLR -10 436 2 23 0 0 0 chr4 101047642 101047665 -83240997 + AT_rich Low_complexity Low_complexity 1 23 0 22 70 0 0 chr4 101047856 101047899 -83240763 + AT_rich Low_complexity Low_complexity 1 43 0 549 256 225 6 chr4 101051029 101051189 -83237473 + MER91A DNA MER1_type 1 195 -1 569 304 91 62 chr4 101052083 101052547 -83236115 - MLT1L LTR MaLR -133 482 6 218 213 0 21 chr4 101053585 101053632 -83235030 - L2 LINE L2 -79 3234 3189 180 0 0 0 chr4 101054548 101054568 -83234094 + (A)n Simple_repeat Simple_repeat 1 20 0 3233 284 214 38 chr4 101055023 101057117 -83231545 + L2 LINE L2 19 2481 -833 2679 153 37 20 chr4 101057117 101057573 -83231089 + MLT2B1 LTR ERVL 1 464 -56 203 330 114 0 chr4 101058150 101058238 -83230424 - MIR SINE MIR -75 187 90 23 97 0 0 chr4 101058392 101058464 -83230198 + AT_rich Low_complexity Low_complexity 1 72 0 355 348 77 39 chr4 101059037 101059218 -83229444 + L2 LINE L2 2899 3086 -227 751 295 50 28 chr4 101059303 101059625 -83229037 + LTR16A LTR ERVL 18 346 -104 3064 285 86 23 chr4 101060057 101062166 -83226496 + HERV16 LTR ERVL 385 2687 -2309 228 280 60 30 chr4 101062287 101062387 -83226275 + LTR16A LTR ERVL 335 437 -13 8094 50 0 0 chr4 101062443 101064222 -83224440 - L1PA5 LINE L1 0 6154 4378 1593 21 0 0 chr4 101064222 101064409 -83224253 + L1PA5 LINE L1 4189 4375 -1771 354 292 21 35 chr4 101064415 101064559 -83224103 + L2 LINE L2 3168 3309 -4 1571 173 47 0 chr4 101064755 101065033 -83223629 + AluSx SINE Alu 1 291 -21 1035 304 89 14 chr4 101065388 101065802 -83222860 + LTR16A LTR ERVL 1 445 -5 359 312 41 52 chr4 101065807 101066076 -83222586 - L1ME4a LINE L1 -203 5918 5653 363 322 109 6 chr4 101066425 101066608 -83222054 + MIR SINE MIR 48 249 -13 202 188 0 0 chr4 101066649 101066681 -83221981 + (TG)n Simple_repeat Simple_repeat 2 33 0 9308 100 11 2 chr4 101066777 101068050 -83220612 - HSMAR1 DNA Mariner 0 1287 3 214 70 116 0 chr4 101068224 101068267 -83220395 + A-rich Low_complexity Low_complexity 3 50 0 249 311 25 25 chr4 101069095 101069214 -83219448 + MER20B DNA MER1_type 2 120 -663 5348 41 1 8 chr4 101070571 101071230 -83217432 - L1PA4 LINE L1 0 6155 5501 209 301 233 8 chr4 101071563 101071696 -83216966 + MIR3 SINE MIR 36 198 -10 1487 316 148 37 chr4 101072057 101073906 -83214756 + L2 LINE L2 1255 3309 -4 319 281 75 34 chr4 101074010 101074156 -83214506 + L2 LINE L2 2256 2407 -907 1655 179 3 14 chr4 101074473 101074785 -83213877 - AluJo SINE Alu 0 309 1 219 139 0 0 chr4 101075087 101075123 -83213539 + (TATATG)n Simple_repeat Simple_repeat 5 40 0 4428 95 72 23 chr4 101075476 101076181 -83212481 - L1PA11 LINE L1 0 6174 5435 1047 263 123 33 chr4 101076462 101076884 -83211778 - LTR16B LTR ERVL -2 462 3 392 297 81 22 chr4 101077256 101077478 -83211184 - MLT1H LTR MaLR -314 235 1 196 237 51 17 chr4 101077492 101077551 -83211111 - L2 LINE L2 -71 3242 3182 389 336 116 39 chr4 101077562 101078003 -83210659 - L2 LINE L2 -1047 2267 1793 471 344 49 0 chr4 101078314 101078538 -83210124 - MIR SINE MIR -7 255 21 29 70 0 0 chr4 101080378 101080435 -83208227 + AT_rich Low_complexity Low_complexity 1 57 0 234 0 0 0 chr4 101080881 101080907 -83207755 + (CA)n Simple_repeat Simple_repeat 2 27 0 1030 158 0 0 chr4 101082906 101083058 -83205604 + AluSg/x SINE Alu 140 291 -21 24 0 0 0 chr4 101083101 101083125 -83205537 + AT_rich Low_complexity Low_complexity 1 24 0 1355 174 19 11 chr4 101083146 101083411 -83205251 + L1 LINE L1 4677 4943 -1203 4961 163 41 14 chr4 101083418 101085108 -83203554 - L1MA6 LINE L1 -143 6157 4410 2220 94 3 0 chr4 101085108 101085396 -83203266 - AluSx SINE Alu 0 312 24 4961 163 41 14 chr4 101085396 101085555 -83203107 - L1MA6 LINE L1 -1890 4410 4257 400 326 21 63 chr4 101085569 101085854 -83202808 - L1ME4a LINE L1 -287 5834 5562 231 181 78 43 chr4 101085899 101086015 -83202647 + (TTTAA)n Simple_repeat Simple_repeat 1 120 0 514 207 0 0 chr4 101086197 101086308 -83202354 - L1PB4 LINE L1 -1 6155 6045 310 237 161 25 chr4 101086595 101086713 -83201949 - L2 LINE L2 0 3313 3180 387 0 0 0 chr4 101086791 101086834 -83201828 + (TG)n Simple_repeat Simple_repeat 2 44 0 1732 238 113 6 chr4 101086874 101087353 -83201309 - L2 LINE L2 -1974 1340 811 253 246 203 0 chr4 101087353 101087422 -83201240 + MER96 DNA MER1_type? 91 173 -2 669 290 118 4 chr4 101087427 101087665 -83200997 - L2 LINE L2 -2611 703 439 11067 100 9 2 chr4 101088271 101090663 -83197999 - L1PA7 LINE L1 0 6154 3747 1799 92 15 0 chr4 101090665 101090927 -83197735 + L1P3 LINE L1 1364 1629 -4832 * 6615 97 0 5 chr4 101090918 101091861 -83196801 + L1P3 LINE L1 1841 2778 -3683 37 39 0 0 chr4 101091940 101091991 -83196671 + AT_rich Low_complexity Low_complexity 1 51 0 29 28 0 0 chr4 101092448 101092484 -83196178 + AT_rich Low_complexity Low_complexity 1 36 0 233 326 129 71 chr4 101093012 101093392 -83195270 + L2 LINE L2 1699 2100 -1214 499 265 120 14 chr4 101093451 101093802 -83194860 - L1ME4a LINE L1 -3 6118 5731 344 315 81 51 chr4 101093940 101094213 -83194449 - HAL1b LINE L1 -791 557 277 418 340 13 19 chr4 101094531 101094690 -83193972 - MIR SINE MIR -73 189 32 22 35 0 0 chr4 101095188 101095217 -83193445 + AT_rich Low_complexity Low_complexity 1 29 0 1020 274 37 4 chr4 101095531 101095801 -83192861 - LTR40b LTR ERVL -179 283 5 217 148 12 49 chr4 101096458 101096539 -83192123 + (TA)n Simple_repeat Simple_repeat 2 79 0 298 220 52 35 chr4 101096555 101096728 -83191934 + (TA)n Simple_repeat Simple_repeat 2 177 0 289 326 28 14 chr4 101099109 101099253 -83189409 + L3 LINE CR1 584 729 -848 1130 212 183 70 chr4 101100990 101101433 -83187229 - MLT1H LTR MaLR 0 549 57 1647 256 126 8 chr4 101101436 101101999 -83186663 - MLT1G LTR MaLR 0 590 5 254 273 105 105 chr4 101102004 101102213 -83186449 - MLT1G-int LTR MaLR -1 1370 1162 441 257 20 0 chr4 101102448 101102549 -83186113 - MLT1H LTR MaLR -492 103 1 1365 304 108 5 chr4 101102635 101103434 -83185228 - L2 LINE L2 -13 3300 2424 316 270 72 27 chr4 101105369 101105480 -83183182 + L2 LINE L2 3192 3307 -6 225 94 0 0 chr4 101105481 101105513 -83183149 + (TGGA)n Simple_repeat Simple_repeat 1 32 0 182 314 128 0 chr4 101105631 101105717 -83182945 + MIR3 SINE MIR 110 206 -2 364 296 26 46 chr4 101105814 101106003 -83182659 - MIR SINE MIR -48 214 34 376 319 37 30 chr4 101106871 101107006 -83181656 - L2 LINE L2 -27 3245 3110 * 769 282 16 49 chr4 101106990 101107235 -83181427 - MIR SINE MIR 0 262 26 286 297 122 27 chr4 101107402 101107550 -83181112 + MIR SINE MIR 101 262 0 255 300 65 111 chr4 101107601 101107908 -83180754 - L2 LINE L2 -173 3099 2807 2637 137 83 21 chr4 101108327 101108845 -83179817 - L1PA16 LINE L1 0 6166 5617 202 195 0 0 chr4 101108901 101108942 -83179720 + (TG)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr4 101109926 101109947 -83178715 + AT_rich Low_complexity Low_complexity 1 21 0 253 385 61 8 chr4 101110002 101110249 -83178413 - L3 LINE CR1 -807 770 511 28776 121 14 65 chr4 101110557 101117039 -83171623 - L1PA7 LINE L1 0 6154 13 1152 94 0 0 chr4 101117057 101117206 -83171456 - AluSp/q SINE Alu -5 308 160 246 229 138 9 chr4 101117670 101117779 -83170883 + MLT1L LTR MaLR 157 279 -336 279 265 91 71 chr4 101117865 101118118 -83170544 + MLT1K LTR MaLR 326 583 -5 403 244 0 0 chr4 101118285 101118367 -83170295 - MIR SINE MIR -166 96 15 192 97 0 0 chr4 101118451 101118482 -83170180 + (GA)n Simple_repeat Simple_repeat 2 32 0 22 0 0 0 chr4 101118655 101118677 -83169985 + AT_rich Low_complexity Low_complexity 1 22 0 468 88 0 121 chr4 101118860 101118951 -83169711 - MADE1 DNA Mariner 0 80 1 711 94 16 8 chr4 101118951 101119079 -83169583 + (TCTA)n Simple_repeat Simple_repeat 1 129 0 323 303 72 53 chr4 101119402 101119554 -83169108 + MIR SINE MIR 32 186 -76 529 228 232 82 chr4 101119885 101120337 -83168325 + LTR33A LTR ERVL 2 521 -2 240 352 0 0 chr4 101120399 101120487 -83168175 - Charlie8 DNA MER1_type -2186 231 144 225 349 55 18 chr4 101120851 101120960 -83167702 - MIR SINE MIR -79 129 17 305 169 56 14 chr4 101121566 101121637 -83167025 - MIR SINE MIR -57 205 132 2010 156 28 57 chr4 101121642 101122212 -83166450 - MLT2A2 LTR ERVL -4 550 1 368 287 10 0 chr4 101122212 101122313 -83166349 - MIR SINE MIR -127 135 34 243 316 154 26 chr4 101122629 101122712 -83165950 - MIR SINE MIR -87 175 78 781 257 16 0 chr4 101122712 101122895 -83165767 + MER5A DNA MER1_type 2 187 -2 195 100 0 0 chr4 101125130 101125160 -83163502 + (TG)n Simple_repeat Simple_repeat 1 30 0 677 254 12 82 chr4 101126314 101126558 -83162104 - LTR33 LTR ERVL -286 235 9 303 237 53 122 chr4 101126958 101127089 -83161573 - MLT1H LTR MaLR -18 531 410 470 274 100 22 chr4 101127155 101127385 -83161277 - MLT1H LTR MaLR -297 252 5 317 299 108 36 chr4 101129171 101129422 -83159240 - MLT1H LTR MaLR -242 307 39 2089 108 3 26 chr4 101129668 101129973 -83158689 + AluSc SINE Alu 1 298 -11 709 141 124 54 chr4 101130037 101130222 -83158440 + pTR5 LTR ERV1 741 938 -1500 3846 124 46 30 chr4 101130334 101131178 -83157484 + pTR5 LTR ERV1 848 2021 -417 322 235 31 20 chr4 101131182 101131280 -83157382 + LTR30 LTR ERV1 544 642 -80 1480 126 5 5 chr4 101131283 101131506 -83157156 + pTR5 LTR ERV1 172 394 -2044 689 231 89 0 chr4 101131775 101132000 -83156662 + L1M4 LINE L1 4398 4642 -1504 212 243 214 0 chr4 101132027 101132097 -83156565 + MIR SINE MIR 3 87 -175 338 260 62 10 chr4 101132322 101132418 -83156244 + MIR SINE MIR 158 258 -4 1053 307 37 43 chr4 101132607 101133070 -83155592 - MLT2F LTR ERVL -2 661 202 211 310 131 65 chr4 101133261 101133490 -83155172 - MIR SINE MIR -15 247 4 25 0 0 0 chr4 101133514 101133539 -83155123 + AT_rich Low_complexity Low_complexity 1 25 0 216 373 0 0 chr4 101134386 101134445 -83154217 - L2 LINE L2 -2 3270 3212 576 255 88 95 chr4 101135234 101135634 -83153028 - HAL1 LINE L1 -36 2471 2075 1031 270 35 27 chr4 101135669 101136036 -83152626 - HAL1 LINE L1 -710 1797 1428 662 298 111 46 chr4 101136239 101136870 -83151792 - HAL1 LINE L1 -1334 1173 502 261 57 0 0 chr4 101137860 101137895 -83150767 + (TC)n Simple_repeat Simple_repeat 1 35 0 220 315 45 0 chr4 101138596 101138685 -83149977 + MIR SINE MIR 98 190 -72 518 231 112 0 chr4 101139089 101139223 -83149439 - MIR SINE MIR -1 261 113 340 267 17 43 chr4 101139334 101139450 -83149212 - L3 LINE CR1 -5 1572 1460 249 33 0 0 chr4 101140778 101140808 -83147854 + (CA)n Simple_repeat Simple_repeat 1 30 0 270 266 43 54 chr4 101144533 101144650 -83144012 + MIR SINE MIR 40 153 -67 1538 145 107 13 chr4 101144805 101145115 -83143547 + MER44D DNA MER2_type 1 609 0 35 88 0 0 chr4 101145578 101145669 -83142993 + AT_rich Low_complexity Low_complexity 1 91 0 237 105 26 0 chr4 101146297 101146335 -83142327 - MLT1A2 LTR MaLR 0 374 336 1128 166 5 40 chr4 101146335 101146534 -83142128 + AluJo SINE Alu 40 231 -81 187 348 25 76 chr4 101146535 101146653 -83142009 - MIR SINE MIR -57 151 40 23 0 0 0 chr4 101146855 101146878 -83141784 + AT_rich Low_complexity Low_complexity 1 23 0 236 277 153 15 chr4 101147175 101147312 -83141350 + MIR SINE MIR 9 164 -98 23 0 0 0 chr4 101147400 101147423 -83141239 + AT_rich Low_complexity Low_complexity 1 23 0 5250 217 31 76 chr4 101147423 101147546 -83141116 - L1MA9 LINE L1 -22 6178 6051 1598 137 78 70 chr4 101147546 101147918 -83140744 + THE1C LTR MaLR 1 375 0 381 22 0 0 chr4 101147922 101147968 -83140694 + (TG)n Simple_repeat Simple_repeat 2 47 0 5250 217 31 76 chr4 101147968 101148791 -83139871 - L1MA9 LINE L1 -152 6048 5190 2054 148 0 0 chr4 101148791 101149102 -83139560 - AluSx SINE Alu -1 311 1 5250 217 31 76 chr4 101149102 101150590 -83138072 - L1MA9 LINE L1 -1010 5190 3637 1632 195 3 13 chr4 101150590 101150903 -83137759 - AluJo SINE Alu -2 310 1 5250 217 31 76 chr4 101150903 101152501 -83136161 - L1MA9 LINE L1 -2563 3637 2509 2352 90 0 3 chr4 101152501 101152802 -83135860 + AluY SINE Alu 1 300 -11 5250 217 31 76 chr4 101152802 101152970 -83135692 - L1MA9 LINE L1 -3691 2509 2335 336 200 0 0 chr4 101152970 101153040 -83135622 + (TA)n Simple_repeat Simple_repeat 2 71 0 229 149 0 0 chr4 101153040 101153087 -83135575 + LTR66 LTR ERVL 398 444 -166 2541 282 73 16 chr4 101153089 101154919 -83133743 - L1MA9 LINE L1 -4253 1782 12 1184 221 13 96 chr4 101155172 101155570 -83133092 - MLT1A1 LTR MaLR 0 365 1 268 171 40 79 chr4 101155747 101155823 -83132839 + L3 LINE CR1 1203 1275 -302 774 271 80 91 chr4 101155824 101156386 -83132276 - LTR67 LTR ERVL 0 557 2 280 318 83 32 chr4 101156393 101156610 -83132052 + L3 LINE CR1 1275 1502 -75 263 207 26 43 chr4 101156911 101157027 -83131635 + (TA)n Simple_repeat Simple_repeat 2 115 0 4052 190 18 8 chr4 101157290 101158122 -83130540 - Tigger1 DNA MER2_type 0 2418 1579 15074 167 22 19 chr4 101158139 101160430 -83128232 - L1MA2 LINE L1 -4 7719 5437 2179 98 0 3 chr4 101160430 101160743 -83127919 - AluY SINE Alu 0 312 1 15074 167 22 19 chr4 101160743 101165502 -83123160 - L1MA2 LINE L1 -2286 5437 13 8742 149 56 9 chr4 101165507 101167012 -83121650 - Tigger1 DNA MER2_type -842 1576 2 271 371 62 6 chr4 101167013 101167191 -83121471 - MIR SINE MIR -62 200 13 26 50 0 0 chr4 101168010 101168050 -83120612 + AT_rich Low_complexity Low_complexity 1 40 0 586 351 16 16 chr4 101168236 101168484 -83120178 + HERV16 LTR ERVL 1251 1498 -3498 515 353 24 56 chr4 101168541 101168762 -83119900 + HERV16 LTR ERVL 1598 1824 -3268 2065 107 101 18 chr4 101168762 101169098 -83119564 - THE1B LTR MaLR 0 364 1 11083 109 8 4 chr4 101169098 101170672 -83117990 - THE1B-int LTR MaLR 0 1580 1 2036 119 104 21 chr4 101170672 101171008 -83117654 - THE1B LTR MaLR 0 364 1 515 353 24 56 chr4 101171008 101171110 -83117552 + HERV16 LTR ERVL 1821 1921 -3171 * 2037 348 65 36 chr4 101171095 101172026 -83116636 + HERV16 LTR ERVL 3658 4648 -1116 1577 99 36 5 chr4 101172026 101172249 -83116413 + MER30 DNA MER1_type 1 230 0 2037 348 65 36 chr4 101172249 101172782 -83115880 + HERV16 LTR ERVL 4648 5164 -600 283 214 0 0 chr4 101173077 101173133 -83115529 + LTR16A1 LTR ERVL 45 100 -357 1560 175 99 6 chr4 101173467 101173821 -83114841 + MLT1B LTR MaLR 1 387 -3 1334 295 59 43 chr4 101174452 101174991 -83113671 + MER77 LTR ERV1 54 601 -4 2868 172 24 8 chr4 101175651 101176157 -83112505 - MLT2B1 LTR ERVL -6 514 1 33 25 0 0 chr4 101176523 101176563 -83112099 + AT_rich Low_complexity Low_complexity 1 40 0 270 0 0 0 chr4 101177774 101177804 -83110858 + (A)n Simple_repeat Simple_repeat 1 30 0 205 321 93 76 chr4 101177818 101178279 -83110383 - L2 LINE L2 -18 3295 2827 216 0 0 0 chr4 101178776 101178800 -83109862 + (CA)n Simple_repeat Simple_repeat 1 24 0 250 300 80 33 chr4 101178835 101178985 -83109677 + L2 LINE L2 3151 3307 -6 21 0 0 0 chr4 101179478 101179499 -83109163 + AT_rich Low_complexity Low_complexity 1 21 0 1288 198 117 24 chr4 101179869 101180203 -83108459 - MLT1A1 LTR MaLR 0 365 1 206 333 197 26 chr4 101182357 101182474 -83106188 - MIR SINE MIR -56 152 16 192 40 0 0 chr4 101183350 101183375 -83105287 + (CAA)n Simple_repeat Simple_repeat 2 26 0 1513 188 17 17 chr4 101183638 101183930 -83104732 + AluJo SINE Alu 6 297 -15 525 362 99 27 chr4 101184373 101184961 -83103701 + L2 LINE L2 2022 2651 -663 27 49 0 0 chr4 101185268 101185309 -83103353 + AT_rich Low_complexity Low_complexity 1 41 0 248 271 0 59 chr4 101185620 101185705 -83102957 - MIR SINE MIR -97 165 86 457 231 9 19 chr4 101185711 101185819 -83102843 + L2 LINE L2 2219 2325 -989 203 313 100 0 chr4 101186564 101186644 -83102018 + MIR SINE MIR 56 143 -119 304 361 101 13 chr4 101187507 101187745 -83100917 + MIR SINE MIR 4 262 0 207 0 0 0 chr4 101187897 101187920 -83100742 + (CA)n Simple_repeat Simple_repeat 1 23 0 378 375 72 47 chr4 101187976 101188339 -83100323 + L2 LINE L2 2900 3271 -1 287 232 137 21 chr4 101188373 101188468 -83100194 + L2 LINE L2 3166 3271 -1 269 258 30 0 chr4 101188468 101188534 -83100128 + GA-rich Low_complexity Low_complexity 3 70 0 21 0 0 0 chr4 101188898 101188919 -83099743 + AT_rich Low_complexity Low_complexity 1 21 0 229 228 35 0 chr4 101189646 101189703 -83098959 + L2 LINE L2 3213 3271 -1 207 224 118 26 chr4 101190749 101190825 -83097837 + MIR3 SINE MIR 87 169 -39 440 301 118 20 chr4 101192135 101192338 -83096324 - MIR SINE MIR -38 224 2 234 330 97 16 chr4 101192535 101192720 -83095942 + MIR SINE MIR 57 256 -6 1960 131 7 0 chr4 101193136 101193419 -83095243 + AluSx SINE Alu 1 285 -27 291 266 232 21 chr4 101193647 101194057 -83094605 - MLT1G1 LTR MaLR -6 589 88 855 187 46 17 chr4 101195778 101196106 -83092556 + L1MCa LINE L1 1464 1892 -4534 5031 228 66 61 chr4 101196111 101197673 -83090989 + L1MA7 LINE L1 3008 4561 -2010 1629 178 10 13 chr4 101197673 101197971 -83090691 + AluJb SINE Alu 1 297 -15 5031 228 66 61 chr4 101197971 101200094 -83088568 + L1MA7 LINE L1 4561 6570 -1 4565 255 57 9 chr4 101200182 101201678 -83086984 + L1M4 LINE L1 2230 3797 -2349 957 249 46 15 chr4 101201678 101202020 -83086642 - MSTD LTR MaLR -2 394 1 1784 243 60 24 chr4 101202026 101202614 -83086048 + L1M4 LINE L1 3797 4405 -1741 24 0 0 0 chr4 101202635 101202659 -83086003 + AT_rich Low_complexity Low_complexity 1 24 0 901 311 50 23 chr4 101202710 101203351 -83085311 + L1ME3A LINE L1 3507 4167 -1979 186 171 0 0 chr4 101203370 101203411 -83085251 + GA-rich Low_complexity Low_complexity 2 42 0 1271 274 82 69 chr4 101203473 101204755 -83083907 + L1ME3A LINE L1 4146 5439 -725 430 224 112 0 chr4 101204754 101204870 -83083792 + L1ME3A LINE L1 6034 6162 -8 * 2000 122 69 28 chr4 101205109 101205469 -83083193 - THE1C LTR MaLR 0 375 1 470 315 97 38 chr4 101205771 101205974 -83082688 + MIR SINE MIR 1 221 -41 1735 162 133 16 chr4 101205974 101206357 -83082305 + MSTA LTR MaLR 1 428 0 470 315 97 38 chr4 101206357 101206391 -83082271 + MIR SINE MIR 221 252 -10 220 391 58 29 chr4 101206849 101207092 -83081570 - L2 LINE L2 -126 3146 2897 2181 99 0 7 chr4 101207495 101207789 -83080873 - AluSc SINE Alu -17 292 1 471 311 87 44 chr4 101210325 101210706 -83077956 - MER115 DNA AcHobo -263 430 10 2469 34 3 0 chr4 101210905 101211203 -83077459 + L1PA5 LINE L1 5853 6151 -3 404 355 13 13 chr4 101211237 101211389 -83077273 - L2 LINE L2 -2 3311 3160 356 310 78 85 chr4 101211544 101211582 -83077080 - L2 LINE L2 -466 2848 2811 2167 62 38 14 chr4 101211582 101211873 -83076789 + AluY SINE Alu 1 298 -13 356 310 78 85 chr4 101211873 101212007 -83076655 - L2 LINE L2 -503 2811 2676 1368 208 29 43 chr4 101212007 101212199 -83076463 - MLT1A2 LTR MaLR -4 370 184 189 0 0 0 chr4 101212199 101212220 -83076442 + (GA)n Simple_repeat Simple_repeat 1 21 0 1368 208 29 43 chr4 101212220 101212402 -83076260 - MLT1A2 LTR MaLR -190 184 1 356 310 78 85 chr4 101212402 101212486 -83076176 - L2 LINE L2 -638 2676 2593 602 328 89 23 chr4 101214543 101214936 -83073726 + L2 LINE L2 88 506 -2808 630 151 34 8 chr4 101215025 101215144 -83073518 - MER46A DNA MER2_type -1 235 114 572 312 27 0 chr4 101215187 101215373 -83073289 - MIR SINE MIR -70 192 2 2102 96 114 18 chr4 101215420 101215752 -83072910 - THE1B LTR MaLR 0 364 1 11593 91 6 2 chr4 101215752 101217326 -83071336 - THE1B-int LTR MaLR 0 1580 1 1989 97 122 21 chr4 101217328 101217381 -83071281 - THE1B LTR MaLR -2 362 316 459 0 0 0 chr4 101217381 101217432 -83071230 + (CA)n Simple_repeat Simple_repeat 2 52 0 1989 97 122 21 chr4 101217432 101217707 -83070955 - THE1B LTR MaLR -48 316 1 952 334 198 5 chr4 101217707 101218471 -83070191 + L2 LINE L2 632 1542 -1772 12432 187 24 15 chr4 101219056 101222638 -83066024 - L1PB1 LINE L1 -1 6150 2539 918 147 0 0 chr4 101222628 101222771 -83065891 - L1PA16 LINE L1 -176 5990 5848 * 4129 140 14 9 chr4 101222772 101223581 -83065081 - L1PA16 LINE L1 -252 5914 5106 343 96 0 0 chr4 101223591 101223643 -83065019 - L1PA16 LINE L1 -9 6157 6106 200 250 50 0 chr4 101224632 101224692 -83063970 + L2 LINE L2 3251 3313 0 250 261 0 31 chr4 101224958 101225023 -83063639 - MIR3 SINE MIR -21 187 125 188 311 183 22 chr4 101225266 101225446 -83063216 - L3 LINE CR1 -206 1371 1163 231 357 184 14 chr4 101225488 101225852 -83062810 - MLT1K LTR MaLR -8 580 155 346 308 70 14 chr4 101225854 101225997 -83062665 - MLT1K LTR MaLR -377 211 61 1372 322 87 58 chr4 101226033 101227065 -83061597 - L3 LINE CR1 -495 1082 21 558 330 49 75 chr4 101227290 101227639 -83061023 + L2 LINE L2 2932 3271 -1 23 54 0 0 chr4 101228808 101228845 -83059817 + AT_rich Low_complexity Low_complexity 1 37 0 28 29 0 0 chr4 101228972 101229007 -83059655 + AT_rich Low_complexity Low_complexity 1 35 0 324 360 0 0 chr4 101229034 101229123 -83059539 + MIR SINE MIR 37 125 -83 253 171 14 14 chr4 101229294 101229364 -83059298 + (TGAA)n Simple_repeat Simple_repeat 3 72 0 2222 112 3 0 chr4 101229476 101229771 -83058891 + AluSg SINE Alu 1 296 -14 186 43 0 0 chr4 101230768 101230791 -83057871 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 63 26 0 0 chr4 101230905 101230982 -83057680 + AT_rich Low_complexity Low_complexity 1 77 0 211 102 0 51 chr4 101230982 101231041 -83057621 + (TAAAAA)n Simple_repeat Simple_repeat 1 56 0 40 49 0 0 chr4 101231041 101231102 -83057560 + AT_rich Low_complexity Low_complexity 1 61 0 832 316 59 30 chr4 101231275 101231768 -83056894 + L1MEd LINE L1 269 775 -5344 720 294 52 36 chr4 101231818 101232124 -83056538 - LTR16A1 LTR ERVL 0 457 147 364 218 65 39 chr4 101232396 101232596 -83056066 - L1MEd LINE L1 -3865 2675 2480 485 329 79 51 chr4 101232883 101233725 -83054937 - L1MEd LINE L1 -4465 2075 1112 13544 24 0 0 chr4 101235451 101237688 -83050974 - L1PA2 LINE L1 -140 6015 3778 42343 39 28 1 chr4 101237790 101243056 -83045606 - L1P LINE L1 -743 5403 1 202 326 68 23 chr4 101243356 101243488 -83045174 - L2 LINE L2 -203 3069 2932 35 24 0 0 chr4 101243677 101243719 -83044943 + AT_rich Low_complexity Low_complexity 1 42 0 1256 164 0 0 chr4 101243720 101243945 -83044717 - L1MA4 LINE L1 -9 6291 6067 1557 184 19 56 chr4 101243963 101244470 -83044192 - L1P4 LINE L1 -662 5506 5044 227 140 20 0 chr4 101244490 101244540 -83044122 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 264 77 0 0 chr4 101244559 101244598 -83044064 + (CA)n Simple_repeat Simple_repeat 2 40 0 2085 122 0 10 chr4 101246895 101247190 -83041472 + AluSx SINE Alu 3 294 -18 27 29 0 0 chr4 101247375 101247409 -83041253 + AT_rich Low_complexity Low_complexity 1 34 0 577 309 101 23 chr4 101248594 101248901 -83039761 + MLT1J2 LTR MaLR 1 331 -119 21 0 0 0 chr4 101249040 101249061 -83039601 + AT_rich Low_complexity Low_complexity 1 21 0 367 323 37 18 chr4 101249370 101249534 -83039128 - MIR3 SINE MIR -7 201 35 195 203 0 0 chr4 101250191 101250255 -83038407 + (TA)n Simple_repeat Simple_repeat 2 65 0 514 320 59 42 chr4 101250400 101250511 -83038151 + L1ME4a LINE L1 5270 5378 -743 2620 14 0 0 chr4 101250511 101250799 -83037863 + AluYa5 SINE Alu 24 311 0 514 320 59 42 chr4 101250799 101251096 -83037566 + L1ME4a LINE L1 5378 5685 -436 298 269 51 13 chr4 101251336 101251492 -83037170 + L1ME4a LINE L1 5767 5928 -193 4373 148 31 5 chr4 101251573 101252311 -83036351 + Tigger4(Zombi) DNA MER2_type 1 757 -1974 2795 10 0 0 chr4 101252524 101252829 -83035833 - AluYa5 SINE Alu -6 305 1 580 269 79 75 chr4 101255719 101255972 -83032690 - MIR SINE MIR -2 260 7 726 308 94 45 chr4 101256129 101256713 -83031949 - L2 LINE L2 -2 3311 2689 29237 123 19 58 chr4 101256715 101263132 -83025530 + L1PA7 LINE L1 9 6171 0 409 348 56 6 chr4 101263134 101263312 -83025350 - L2 LINE L2 -623 2691 2505 * 822 330 79 19 chr4 101263310 101263689 -83024973 - L3 LINE CR1 -201 1376 975 276 297 95 69 chr4 101265903 101266135 -83022527 - L2 LINE L2 -2 3311 3074 261 0 0 0 chr4 101266254 101266283 -83022379 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 291 246 35 0 chr4 101266863 101267005 -83021657 + (TA)n Simple_repeat Simple_repeat 1 147 0 6203 252 110 18 chr4 101267026 101268419 -83020243 + L1MD3 LINE L1 2774 4038 -3957 2181 116 0 0 chr4 101268419 101268711 -83019951 - AluSx SINE Alu -12 300 9 6203 252 110 18 chr4 101268711 101270071 -83018591 + L1MD3 LINE L1 4038 5272 -2723 1292 129 176 29 chr4 101270071 101270343 -83018319 + AluSx SINE Alu 1 312 0 6203 252 110 18 chr4 101270343 101271923 -83016739 + L1MD3 LINE L1 5272 7667 -328 3264 65 2 33 chr4 101271923 101272381 -83016281 + L1PA8 LINE L1 5729 6172 0 6203 252 110 18 chr4 101272381 101272733 -83015929 + L1MD3 LINE L1 7667 7985 -10 1835 267 31 44 chr4 101272740 101273417 -83015245 + L1ME3A LINE L1 5494 6161 -9 336 265 10 41 chr4 101273430 101273528 -83015134 - L2 LINE L2 -604 2710 2616 369 284 107 55 chr4 101273942 101274718 -83013944 + L1M4 LINE L1 2211 3026 -3120 27 29 0 0 chr4 101274746 101274780 -83013882 + AT_rich Low_complexity Low_complexity 1 34 0 307 387 65 24 chr4 101274978 101275226 -83013436 - L2 LINE L2 -2842 472 215 2598 55 0 0 chr4 101275569 101275877 -83012785 + AluY SINE Alu 2 309 -2 22 0 0 0 chr4 101276088 101276110 -83012552 + AT_rich Low_complexity Low_complexity 1 22 0 399 302 119 74 chr4 101276555 101276866 -83011796 - L2 LINE L2 0 3272 2948 180 301 60 36 chr4 101278170 101278253 -83010409 - MIR3 SINE MIR -6 202 118 299 331 39 8 chr4 101280115 101280242 -83008420 - MIR SINE MIR -84 178 48 370 385 87 23 chr4 101280635 101281071 -83007591 - L2 LINE L2 -427 2887 2424 1942 129 25 0 chr4 101281268 101281554 -83007108 + AluSx SINE Alu 1 293 -19 388 308 13 50 chr4 101281588 101281747 -83006915 + L2 LINE L2 3159 3311 -2 610 233 74 6 chr4 101283152 101283328 -83005334 + MER115 DNA AcHobo 505 692 -1 366 221 81 7 chr4 101283960 101284096 -83004566 + MER103 DNA DNA 13 158 -8 247 314 168 43 chr4 101284332 101284517 -83004145 + L3b LINE CR1 1246 1453 -130 281 250 102 11 chr4 101286171 101286259 -83002403 + L2 LINE L2 3169 3264 -8 38 0 0 0 chr4 101289393 101289431 -82999231 + AT_rich Low_complexity Low_complexity 1 38 0 331 378 74 14 chr4 101289634 101289782 -82998880 + L2 LINE L2 3115 3271 -1 1799 189 31 3 chr4 101289842 101290197 -82998465 + MLT1A1 LTR MaLR 1 365 0 253 337 89 10 chr4 101290543 101290644 -82998018 - MIR SINE MIR -64 144 36 400 305 16 47 chr4 101290882 101291010 -82997652 + MIR SINE MIR 48 171 -91 684 306 37 12 chr4 101291074 101291319 -82997343 - MIR SINE MIR -10 252 2 605 284 222 8 chr4 101291467 101291706 -82996956 + L2 LINE L2 2645 2934 -380 184 261 50 124 chr4 101291715 101291876 -82996786 + L2 LINE L2 3036 3184 -129 229 322 89 22 chr4 101291949 101292039 -82996623 + L2 LINE L2 3194 3289 -24 480 301 62 21 chr4 101292893 101293086 -82995576 + MIR SINE MIR 7 207 -55 180 77 0 0 chr4 101293144 101293170 -82995492 + (CAAAAA)n Simple_repeat Simple_repeat 5 30 0 288 316 0 20 chr4 101294539 101294637 -82994025 - MIR SINE MIR -57 151 56 2326 95 3 0 chr4 101294972 101295276 -82993386 - AluSp SINE Alu -5 308 4 283 344 44 0 chr4 101296151 101296241 -82992421 - L2 LINE L2 -28 3244 3151 186 383 90 25 chr4 101296407 101296608 -82992054 - L2 LINE L2 -234 3038 2825 253 368 0 0 chr4 101296823 101296910 -82991752 - L2 LINE L2 -535 2779 2693 1296 244 96 24 chr4 101296940 101297432 -82991230 + MER20B DNA MER1_type 2 528 -255 475 270 20 85 chr4 101297630 101297830 -82990832 - MER5A DNA MER1_type 0 189 3 195 200 25 0 chr4 101297837 101297877 -82990785 + MIR3 SINE MIR 165 205 -3 196 204 23 0 chr4 101298893 101298937 -82989725 + MIR SINE MIR 159 203 -59 501 318 0 8 chr4 101299881 101300013 -82988649 + MIR SINE MIR 16 146 -62 242 29 29 0 chr4 101300911 101300946 -82987716 + (CAA)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr4 101301281 101301303 -82987359 + AT_rich Low_complexity Low_complexity 1 22 0 283 326 0 0 chr4 101301422 101301508 -82987154 - L2 LINE L2 0 3313 3228 209 200 0 0 chr4 101303238 101303273 -82985389 + polypyrimidine Low_complexity Low_complexity 2 36 0 2198 114 0 0 chr4 101303566 101303863 -82984799 - AluSx SINE Alu -15 297 1 4989 92 18 4 chr4 101303932 101304667 -82983995 - L1MA2 LINE L1 0 6304 5560 1818 237 18 20 chr4 101305514 101306003 -82982659 + L1ME1 LINE L1 5646 6133 -33 373 279 12 0 chr4 101306216 101306302 -82982360 - L2 LINE L2 0 3272 3186 180 0 0 0 chr4 101306527 101306547 -82982115 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 220 404 107 9 chr4 101307118 101307343 -82981319 - L2 LINE L2 -351 2963 2717 1401 100 0 0 chr4 101307485 101307700 -82980962 + AluSg/x SINE Alu 105 319 0 885 243 24 57 chr4 101308600 101308958 -82979704 + LTR40a LTR ERVL 164 517 -2 201 147 0 0 chr4 101309438 101309472 -82979190 + (A)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr4 101310527 101310548 -82978114 + AT_rich Low_complexity Low_complexity 1 21 0 2462 77 0 0 chr4 101311925 101312236 -82976426 + AluY SINE Alu 1 311 0 452 280 104 8 chr4 101315900 101316025 -82972637 - MER20 DNA MER1_type -82 137 1 21 57 0 0 chr4 101317454 101317489 -82971173 + AT_rich Low_complexity Low_complexity 1 35 0 249 297 129 0 chr4 101317489 101317590 -82971072 + L2 LINE L2 3199 3312 -1 22 0 0 0 chr4 101317644 101317666 -82970996 + AT_rich Low_complexity Low_complexity 1 22 0 286 364 63 0 chr4 101317875 101318018 -82970644 + MIR SINE MIR 87 238 -24 328 323 81 37 chr4 101318146 101318307 -82970355 + MIR3 SINE MIR 35 202 -6 686 357 33 15 chr4 101318537 101318870 -82969792 + LTR16C LTR ERVL 151 489 -2 2493 67 0 0 chr4 101319246 101319544 -82969118 + AluY SINE Alu 1 298 -13 702 314 30 63 chr4 101319851 101320185 -82968477 + ERVL LTR ERVL 2882 3204 -2560 273 324 97 7 chr4 101321572 101321625 -82967037 - MIR SINE MIR -1 261 214 441 0 0 0 chr4 101321625 101321674 -82966988 + (TG)n Simple_repeat Simple_repeat 2 50 0 273 324 97 7 chr4 101321674 101321765 -82966897 - MIR SINE MIR -48 214 104 198 320 13 26 chr4 101322007 101322085 -82966577 - L2 LINE L2 0 3313 3237 258 283 232 10 chr4 101322112 101322211 -82966451 + L2 LINE L2 3184 3304 -9 362 320 99 33 chr4 101322437 101322740 -82965922 - L1MEd LINE L1 -822 5324 5002 426 251 74 55 chr4 101322951 101323314 -82965348 - L1MEd LINE L1 -1511 4635 4266 394 312 99 32 chr4 101323303 101324088 -82964574 - L1MEd LINE L1 -2184 3962 3125 * 410 227 106 0 chr4 101324143 101324275 -82964387 + LTR52 LTR ERVL 230 375 -46 550 351 39 26 chr4 101324276 101324658 -82964004 - L1MEd LINE L1 -3107 3039 2653 1418 215 52 33 chr4 101324697 101325065 -82963597 - LTR52 LTR ERVL -46 375 1 236 232 12 12 chr4 101325825 101325907 -82962755 - L1M4 LINE L1 -1452 4694 4613 4740 179 60 5 chr4 101325924 101326885 -82961777 - L1MA6 LINE L1 -7 6995 5982 7192 210 62 28 chr4 101326909 101326956 -82961706 - L1MA6 LINE L1 -1865 4983 4939 207 0 0 0 chr4 101326956 101326979 -82961683 + (CA)n Simple_repeat Simple_repeat 2 24 0 7192 210 62 28 chr4 101326979 101330669 -82957993 - L1MA6 LINE L1 -1909 4939 1119 28 48 0 0 chr4 101330728 101330770 -82957892 + AT_rich Low_complexity Low_complexity 1 42 0 24 32 0 0 chr4 101331004 101331035 -82957627 + AT_rich Low_complexity Low_complexity 1 31 0 408 275 81 102 chr4 101331217 101331784 -82956878 - L1MEd LINE L1 -1126 1381 827 235 287 315 0 chr4 101332564 101332707 -82955955 + MIR SINE MIR 75 262 0 21 71 0 0 chr4 101332707 101332749 -82955913 + AT_rich Low_complexity Low_complexity 1 42 0 201 383 43 49 chr4 101333709 101334056 -82954606 + L2 LINE L2 925 1269 -2045 573 216 11 88 chr4 101334063 101334244 -82954418 + MER5B DNA MER1_type 1 167 -11 561 251 74 12 chr4 101334253 101334416 -82954246 - MER5B DNA MER1_type -5 173 1 230 350 171 35 chr4 101334430 101335145 -82953517 + L2 LINE L2 1336 2147 -1167 202 282 84 0 chr4 101335718 101335789 -82952873 + MIR SINE MIR 183 259 -3 24 53 0 0 chr4 101335820 101335858 -82952804 + AT_rich Low_complexity Low_complexity 1 38 0 231 336 35 9 chr4 101336016 101336132 -82952530 + MIR3 SINE MIR 83 201 -7 1735 190 18 3 chr4 101336548 101336885 -82951777 - MER2 DNA MER2_type -1 343 2 411 113 0 0 chr4 101336886 101336948 -82951714 + (TG)n Simple_repeat Simple_repeat 1 62 0 254 326 51 7 chr4 101337005 101337143 -82951519 - L1MDa LINE L1 -2507 4033 3890 34991 35 11 1 chr4 101337143 101343171 -82945491 + L1PA2 LINE L1 4 6155 0 356 291 41 12 chr4 101343171 101343343 -82945319 - L1MDa LINE L1 -2643 3897 3721 21 82 0 0 chr4 101345116 101345165 -82943497 + AT_rich Low_complexity Low_complexity 1 49 0 212 260 0 0 chr4 101345261 101345311 -82943351 + GA-rich Low_complexity Low_complexity 2 51 0 540 113 0 0 chr4 101346290 101346370 -82942292 + MADE1 DNA Mariner 1 80 0 1216 188 5 5 chr4 101346383 101346606 -82942056 - AluJo SINE Alu -3 309 87 189 0 0 0 chr4 101346704 101346725 -82941937 + (T)n Simple_repeat Simple_repeat 1 21 0 1702 114 51 24 chr4 101346773 101347105 -82941557 - L1MA2 LINE L1 0 6304 5964 231 36 0 0 chr4 101347114 101347142 -82941520 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2163 96 0 0 chr4 101347143 101347424 -82941238 - AluSq SINE Alu -32 281 1 225 0 0 0 chr4 101347531 101347556 -82941106 + (TG)n Simple_repeat Simple_repeat 2 26 0 228 230 141 42 chr4 101347573 101347764 -82940898 - L1MDa LINE L1 -2986 3554 3345 405 304 52 67 chr4 101347766 101347960 -82940702 + LTR16B LTR ERVL 3 193 -271 1430 104 0 0 chr4 101348008 101348201 -82940461 - AluSq SINE Alu -13 300 108 827 262 43 9 chr4 101348201 101348434 -82940228 + LTR16B LTR ERVL 222 462 -2 267 274 49 39 chr4 101348831 101349035 -82939627 - L1MDa LINE L1 -3894 2646 2441 256 305 92 8 chr4 101349528 101349659 -82939003 - L1MDa LINE L1 -5974 556 415 1266 287 51 17 chr4 101349687 101350275 -82938387 + Charlie7 DNA MER1_type 121 728 -1884 9749 196 29 17 chr4 101350282 101352441 -82936221 + L1MA3 LINE L1 2278 4461 -1685 6982 32 0 1 chr4 101352425 101353261 -82935401 + L1PA4 LINE L1 3500 4334 -1812 * 6813 5 0 5 chr4 101353271 101354045 -82934617 - L1HS LINE L1 0 6155 5386 * 8043 30 0 6 chr4 101354042 101355002 -82933660 + L1HS LINE L1 4413 5368 -778 8734 40 0 0 chr4 101355002 101356843 -82931819 + L1PA4 LINE L1 4315 6155 0 8043 30 0 6 chr4 101356843 101356872 -82931790 + L1PA4 LINE L1 5368 5396 -750 3819 174 24 15 chr4 101356850 101357657 -82931005 + L1MA3 LINE L1 4493 5306 -840 * 2386 69 0 31 chr4 101357684 101358001 -82930661 - AluY SINE Alu -4 307 1 1869 138 0 0 chr4 101358001 101358277 -82930385 - AluSx SINE Alu -36 276 1 6500 125 14 2 chr4 101358305 101359530 -82929132 + L1PB1 LINE L1 4916 6151 0 259 188 31 56 chr4 101359553 101359713 -82928949 + (TTATA)n Simple_repeat Simple_repeat 2 157 0 352 227 55 27 chr4 101359738 101359848 -82928814 + L1MC5 LINE L1 7823 7935 -26 * 4114 123 23 13 chr4 101359839 101360542 -82928120 + L1MA3 LINE L1 5290 5991 -314 573 333 33 11 chr4 101360591 101360861 -82927801 - L3b LINE CR1 -181 1402 1127 2175 135 28 8 chr4 101362195 101362551 -82926111 - THE1B LTR MaLR -1 363 1 1444 195 18 82 chr4 101363295 101363345 -82925317 + MLT1A1 LTR MaLR 1 53 -312 6696 74 8 20 chr4 101363345 101364286 -82924376 + L1PA8 LINE L1 4542 5469 -703 2152 117 0 3 chr4 101364286 101364586 -82924076 + AluSx SINE Alu 1 299 -13 6696 74 8 20 chr4 101364586 101365282 -82923380 + L1PA8 LINE L1 5469 6172 0 1444 195 18 82 chr4 101365282 101365621 -82923041 + MLT1A1 LTR MaLR 53 365 0 189 0 0 0 chr4 101366870 101366891 -82921771 + (CA)n Simple_repeat Simple_repeat 2 22 0 1042 247 123 87 chr4 101367114 101367791 -82920871 - L1ME3 LINE L1 -28 6134 5434 1115 198 28 8 chr4 101367796 101368048 -82920614 + L1PB4 LINE L1 5900 6156 0 1264 107 11 0 chr4 101368426 101368613 -82920049 - L1PA8 LINE L1 -13 6159 5971 619 269 16 11 chr4 101369499 101369681 -82918981 - L1PB4 LINE L1 -4 6152 5970 1100 58 0 0 chr4 101370051 101370190 -82918472 - L1PA4 LINE L1 -2102 4044 3906 11140 32 0 0 chr4 101370190 101372299 -82916363 + L1PA4 LINE L1 4040 6155 0 189 0 0 0 chr4 101372982 101373003 -82915659 + (T)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr4 101373144 101373165 -82915497 + AT_rich Low_complexity Low_complexity 1 21 0 339 263 110 76 chr4 101374058 101374294 -82914368 - HAL1 LINE L1 -1043 1464 1221 1423 83 14 18 chr4 101374303 101374520 -82914142 + L1PA13 LINE L1 5941 6156 -7 378 219 106 13 chr4 101374729 101374880 -82913782 - L1MEd LINE L1 -5273 846 682 2301 237 49 19 chr4 101374883 101375634 -82913028 - L1MEd LINE L1 -3242 2887 2114 1406 100 4 62 chr4 101375653 101375894 -82912768 - L1PA14 LINE L1 -1 6160 5934 335 343 90 10 chr4 101376014 101376215 -82912447 - L1MEd LINE L1 -5650 469 253 23 97 0 0 chr4 101376231 101376303 -82912359 + AT_rich Low_complexity Low_complexity 1 72 0 723 281 153 40 chr4 101377067 101377466 -82911196 + MLT1J1 LTR MaLR 3 446 0 216 86 0 0 chr4 101379084 101379119 -82909543 + (A)n Simple_repeat Simple_repeat 1 35 0 225 0 0 0 chr4 101379119 101379144 -82909518 + (CA)n Simple_repeat Simple_repeat 2 26 0 513 319 73 52 chr4 101379277 101379794 -82908868 + L2 LINE L2 1182 1709 -1605 238 322 82 7 chr4 101380495 101380641 -82908021 + L2 LINE L2 1861 2017 -1297 21 0 0 0 chr4 101380673 101380694 -82907968 + AT_rich Low_complexity Low_complexity 1 21 0 567 74 0 0 chr4 101381257 101381338 -82907324 + (TA)n Simple_repeat Simple_repeat 1 81 0 209 245 0 0 chr4 101382202 101382251 -82906411 + L2 LINE L2 3265 3313 0 530 397 74 31 chr4 101382897 101383840 -82904822 - L2 LINE L2 0 3272 2198 370 270 63 16 chr4 101386088 101386214 -82902448 - L2 LINE L2 -208 3064 2933 203 246 0 0 chr4 101386310 101386358 -82902304 + T-rich Low_complexity Low_complexity 1 51 -6 730 115 23 15 chr4 101386358 101386488 -82902174 - L1PA15 LINE L1 0 6165 6035 893 60 0 0 chr4 101386497 101386613 -82902049 - L1PA5 LINE L1 -1 6153 6038 1460 230 53 3 chr4 101387118 101387546 -82901116 - L1MD3 LINE L1 -10 7985 7446 1429 222 92 72 chr4 101387562 101388169 -82900493 + L1MC4a LINE L1 6745 7363 -445 26 0 0 0 chr4 101388171 101388197 -82900465 + AT_rich Low_complexity Low_complexity 1 26 0 501 311 101 19 chr4 101388277 101388693 -82899969 - L1MC/D LINE L1 -755 5391 5223 2375 153 44 2 chr4 101388910 101389321 -82899341 + MSTA LTR MaLR 1 428 0 249 360 161 27 chr4 101389736 101390319 -82898343 - L2 LINE L2 -443 2871 2211 362 283 91 71 chr4 101390447 101390492 -82898170 + L2 LINE L2 3000 3043 -270 2571 101 3 6 chr4 101390492 101390848 -82897814 - THE1A LTR MaLR 0 355 1 11510 99 5 2 chr4 101390848 101392423 -82896239 - THE1A-int LTR MaLR 0 1580 1 2248 114 22 31 chr4 101392423 101392781 -82895881 - THE1A LTR MaLR 0 355 1 362 283 91 71 chr4 101392781 101393041 -82895621 + L2 LINE L2 3042 3313 0 7166 119 52 3 chr4 101394097 101395269 -82893393 + Tigger3b DNA MER2_type 2 1231 0 219 272 0 0 chr4 101395276 101395368 -82893294 + (TA)n Simple_repeat Simple_repeat 2 93 0 198 0 0 0 chr4 101395726 101395748 -82892914 + (TG)n Simple_repeat Simple_repeat 2 23 0 341 222 40 40 chr4 101396728 101396827 -82891835 - Charlie7 DNA MER1_type 0 2612 2514 244 331 169 7 chr4 101397463 101397611 -82891051 - MER5A DNA MER1_type -14 175 4 774 240 65 109 chr4 101397653 101398148 -82890514 - L1MC4 LINE L1 0 8042 7570 709 79 26 132 chr4 101398154 101398306 -82890356 - AluSg/x SINE Alu -11 301 166 1978 106 3 59 chr4 101398395 101398716 -82889946 - AluSx SINE Alu -9 303 1 739 175 58 0 chr4 101398739 101398876 -82889786 - MER44D DNA MER2_type 0 605 461 509 177 123 62 chr4 101398862 101398992 -82889670 - MER44D DNA MER2_type -201 408 1 * 1922 221 128 0 chr4 101399003 101399542 -82889120 - L1MC4 LINE L1 -502 7540 6933 1576 198 7 7 chr4 101399567 101399855 -82888807 + AluJb SINE Alu 1 288 -24 2111 151 204 114 chr4 101399871 101400395 -82888267 - L1MC3 LINE L1 -24 7761 7285 271 299 0 0 chr4 101400395 101400462 -82888200 - MLT1F1 LTR MaLR -465 102 36 2111 151 204 114 chr4 101400462 101400600 -82888062 - L1MC3 LINE L1 -500 7285 7161 2422 93 29 3 chr4 101400600 101400945 -82887717 - L1PA10 LINE L1 -12 6156 5803 2111 151 204 114 chr4 101400945 101401010 -82887652 - L1MC3 LINE L1 -624 7161 6896 240 221 268 17 chr4 101401039 101401274 -82887388 - L1MCa LINE L1 -3011 3553 3260 567 207 0 55 chr4 101401291 101401411 -82887251 + L1MCa LINE L1 2347 2498 -3993 2229 114 0 0 chr4 101401411 101401709 -82886953 + AluSx SINE Alu 1 298 -14 567 207 0 55 chr4 101401709 101401754 -82886908 + L1MCa LINE L1 2498 2544 -3947 * 1674 274 40 26 chr4 101401750 101402781 -82885881 - L1MCa LINE L1 -3310 3254 2186 1542 220 40 31 chr4 101402821 101403298 -82885364 - L1MCa LINE L1 -4907 1657 1177 336 258 54 0 chr4 101403287 101403380 -82885282 - L1P LINE L1 -2090 4056 3959 * 556 189 18 0 chr4 101403426 101403537 -82885125 + L1 LINE L1 4978 5090 -1056 * 881 263 35 9 chr4 101403534 101403762 -82884900 - L1MCa LINE L1 -5242 803 570 2636 39 7 0 chr4 101403846 101404154 -82884508 + AluY SINE Alu 1 310 -1 791 284 93 16 chr4 101404185 101404498 -82884164 - L1MCa LINE L1 -5480 565 229 709 293 168 0 chr4 101404498 101404795 -82883867 + LTR16B LTR ERVL 114 460 -4 314 155 155 21 chr4 101404804 101404901 -82883761 - L1ME LINE L1 -3594 2486 2377 1058 271 74 44 chr4 101404926 101405775 -82882887 - L1ME LINE L1 -4441 1639 760 333 229 12 0 chr4 101405763 101405846 -82882816 - L1MA9 LINE L1 -38 6274 6191 * 315 254 26 61 chr4 101405961 101406075 -82882587 - L1ME LINE L1 -5955 115 6 291 262 32 63 chr4 101406420 101406546 -82882116 + MLT1L LTR MaLR 166 287 -328 233 305 0 29 chr4 101406717 101406822 -82881840 + MLT1L LTR MaLR 512 613 -2 264 261 15 0 chr4 101407675 101407740 -82880922 + G-rich Low_complexity Low_complexity 5 70 0 730 62 0 10 chr4 101458207 101458303 -82830359 + L1P LINE L1 1509 1603 -4543 24 0 0 0 chr4 101458327 101458351 -82830311 + AT_rich Low_complexity Low_complexity 1 24 0 9506 195 40 16 chr4 101458351 101460619 -82828043 + L1 LINE L1 2942 5263 -883 293 314 94 6 chr4 101462094 101462253 -82826409 - L1MC/D LINE L1 -2033 5775 5603 650 157 209 11 chr4 101462270 101462461 -82826201 - L1MA3 LINE L1 0 6305 6077 2114 128 7 7 chr4 101462664 101462969 -82825693 - AluSc SINE Alu -4 305 1 372 314 64 5 chr4 101462990 101463194 -82825468 - L1MC/D LINE L1 -842 5304 5089 243 345 149 6 chr4 101467549 101467717 -82820945 + L2 LINE L2 2437 2628 -686 628 276 117 0 chr4 101467775 101467971 -82820691 - MLT1J2 LTR MaLR -41 409 191 211 267 0 0 chr4 101468412 101468457 -82820205 + CT-rich Low_complexity Low_complexity 2 46 0 4787 171 47 27 chr4 101468721 101468894 -82819768 + Charlie1a DNA MER1_type 1 169 -2592 2232 119 36 30 chr4 101468894 101469256 -82819406 - THE1B LTR MaLR 0 364 1 4787 171 47 27 chr4 101469256 101470058 -82818604 + Charlie1a DNA MER1_type 169 996 -459 285 143 131 12 chr4 101470163 101470247 -82818415 + Charlie1a DNA MER1_type 1173 1266 -189 3957 108 45 93 chr4 101470247 101471051 -82817611 + L1MA5A LINE L1 5511 6275 -22 534 202 118 0 chr4 101471071 101471249 -82817413 + Charlie1a DNA MER1_type 1257 1455 0 885 232 31 45 chr4 101471259 101471483 -82817179 + MER58A DNA MER1_type 4 224 0 368 242 7 118 chr4 101471508 101471661 -82817001 - MER5B DNA MER1_type -42 136 1 839 284 130 11 chr4 101471890 101472203 -82816459 - MLT1J2 LTR MaLR -24 426 63 2206 121 0 7 chr4 101472203 101472508 -82816154 + AluSx SINE Alu 1 303 -9 839 284 130 11 chr4 101472508 101472556 -82816106 - MLT1J2 LTR MaLR -387 63 22 1794 206 46 28 chr4 101472628 101473124 -82815538 + MLT1D LTR MaLR 1 505 0 270 333 26 18 chr4 101473220 101473334 -82815328 - L2 LINE L2 0 3272 3158 21 0 0 0 chr4 101474717 101474738 -82813924 + AT_rich Low_complexity Low_complexity 1 21 0 323 277 72 30 chr4 101475556 101475720 -82812942 - MLT1L LTR MaLR -8 607 340 860 250 99 8 chr4 101475939 101476191 -82812471 + MER90 LTR ERV1 2 276 -338 28619 53 7 10 chr4 101477221 101481000 -82807662 + L1PA6 LINE L1 1696 5449 -705 2617 49 0 3 chr4 101481000 101481308 -82807354 + AluYa5 SINE Alu 1 307 -4 28619 53 7 10 chr4 101481308 101482008 -82806654 + L1PA6 LINE L1 5449 6150 -4 23 0 0 0 chr4 101482010 101482033 -82806629 + AT_rich Low_complexity Low_complexity 1 23 0 259 313 48 7 chr4 101482511 101482658 -82806004 + L1MCc LINE L1 1226 1378 -5045 613 310 34 16 chr4 101482682 101483005 -82805657 + L1MCc LINE L1 2306 2634 -4488 10704 156 86 22 chr4 101483030 101483394 -82805268 + L1M1 LINE L1 796 1135 -6430 1892 164 0 7 chr4 101483394 101483711 -82804951 - AluSx SINE Alu 0 315 1 10704 156 86 22 chr4 101483711 101485318 -82803344 + L1M1 LINE L1 1135 2894 -4671 18399 184 34 17 chr4 101485341 101488839 -82799823 + L1M1 LINE L1 152 3760 -3805 1796 115 73 31 chr4 101488839 101489127 -82799535 + AluSg SINE Alu 1 300 -10 18399 184 34 17 chr4 101489127 101490603 -82798059 + L1M1 LINE L1 3760 5210 -2355 * 22586 95 21 5 chr4 101490602 101494726 -82793936 + L1PA7 LINE L1 1973 6154 0 6788 173 16 53 chr4 101494718 101496739 -82791923 + L1M1 LINE L1 5194 7133 -588 * 306 236 75 9 chr4 101496845 101496951 -82791711 + MER74B LTR ERVL 436 548 -74 454 239 87 43 chr4 101497013 101497151 -82791511 - MIR SINE MIR -87 175 32 313 271 14 0 chr4 101499068 101499138 -82789524 - MIR SINE MIR -116 92 22 195 330 32 21 chr4 101499249 101499343 -82789319 - MIR3 SINE MIR -3 205 111 1634 179 5 93 chr4 101500190 101500599 -82788063 + MLT1A2 LTR MaLR 1 373 -1 210 257 191 9 chr4 101500927 101501032 -82787630 + L2 LINE L2 3182 3305 -8 246 307 57 0 chr4 101501169 101501257 -82787405 + L2 LINE L2 3221 3313 0 231 291 18 0 chr4 101501487 101501542 -82787120 + MIR SINE MIR 61 116 -146 1591 311 66 3 chr4 101501553 101502157 -82786505 + MLT2F LTR ERVL 18 625 -3 24 0 0 0 chr4 101502173 101502197 -82786465 + AT_rich Low_complexity Low_complexity 1 24 0 213 236 109 73 chr4 101502197 101502307 -82786355 + MIR SINE MIR 147 260 -2 24 32 0 0 chr4 101502308 101502339 -82786323 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr4 101503375 101503397 -82785265 + AT_rich Low_complexity Low_complexity 1 22 0 2184 120 0 0 chr4 101505115 101505407 -82783255 - AluSg SINE Alu -18 292 1 190 319 128 14 chr4 101505734 101505875 -82782787 - L3 LINE CR1 -245 1332 1176 717 207 174 45 chr4 101505894 101506172 -82782490 - MLT1A1 LTR MaLR 0 365 1 397 219 316 0 chr4 101506226 101506381 -82782281 + MIR SINE MIR 57 260 -2 180 0 0 0 chr4 101506714 101506734 -82781928 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 840 262 59 68 chr4 101506743 101507236 -82781426 - MER21B LTR ERV1 -105 758 98 459 233 0 0 chr4 101507283 101507369 -82781293 - MER21B LTR ERV1 -773 90 5 307 292 146 23 chr4 101508470 101508641 -82780021 + L3 LINE CR1 1384 1575 -2 419 235 0 0 chr4 101508883 101508964 -82779698 + MIR SINE MIR 73 153 -109 2239 146 48 54 chr4 101509208 101509688 -82778974 - L1MA8 LINE L1 -7 6284 5808 1529 121 17 0 chr4 101509723 101509962 -82778700 - L1MA8 LINE L1 -456 5835 5593 1725 184 159 11 chr4 101509964 101510399 -82778263 - L1MA4A LINE L1 -23 6280 5782 336 272 0 22 chr4 101510406 101510498 -82778164 + L1MC4 LINE L1 6614 6703 -1339 * 354 235 49 0 chr4 101510431 101510512 -82778150 - L1MC4 LINE L1 -1344 6698 6614 7609 142 38 26 chr4 101510623 101511918 -82776744 - L1P LINE L1 -4835 1311 2 3044 210 74 1 chr4 101511915 101512886 -82775776 - L1 LINE L1 -3172 3676 2642 * 5451 275 41 55 chr4 101512884 101514794 -82773868 - L1 LINE L1 -4964 1885 2 3461 147 33 20 chr4 101514795 101515691 -82772971 - L1M2 LINE L1 -704 5608 4693 357 260 206 2 chr4 101516734 101516885 -82771777 - MIR3 SINE MIR -24 184 9 501 116 113 14 chr4 101517396 101517508 -82771154 + L1M2 LINE L1 5482 5605 -551 490 44 0 0 chr4 101517510 101517578 -82771084 + L1PA13 LINE L1 6096 6163 0 2209 107 3 3 chr4 101517586 101517885 -82770777 + AluSq SINE Alu 1 299 -14 24 32 0 0 chr4 101517914 101517945 -82770717 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 101518437 101518458 -82770204 + AT_rich Low_complexity Low_complexity 1 21 0 579 357 83 21 chr4 101518570 101519052 -82769610 - L3 LINE CR1 -222 1355 844 245 224 0 0 chr4 101519971 101520020 -82768642 - MER5B DNA MER1_type -6 172 124 279 0 0 0 chr4 101520113 101520144 -82768518 + (T)n Simple_repeat Simple_repeat 1 31 0 3590 111 21 7 chr4 101520355 101520914 -82767748 + L1MA1 LINE L1 5736 6302 0 15042 175 18 12 chr4 101520918 101522647 -82766015 + L1MA3 LINE L1 3167 4884 -2840 2452 73 0 3 chr4 101522647 101522948 -82765714 + AluY SINE Alu 1 300 -11 15042 175 18 12 chr4 101522948 101525752 -82762910 + L1MA3 LINE L1 4884 7723 -1 680 249 99 53 chr4 101525813 101526336 -82762326 + L1MEc LINE L1 1975 2521 -3875 1906 262 47 8 chr4 101526797 101527502 -82761160 + L1M2 LINE L1 2557 3399 -4167 563 355 93 48 chr4 101527526 101527833 -82760829 - MERVL LTR ERVL -1204 4281 3989 2475 60 0 0 chr4 101527833 101528134 -82760528 - AluY SINE Alu -10 301 1 563 355 93 48 chr4 101528134 101528774 -82759888 - MERVL LTR ERVL -1496 3989 3291 1165 72 0 0 chr4 101528884 101529036 -82759626 - L1PA8 LINE L1 -2 6170 6019 361 261 11 91 chr4 101529061 101529325 -82759337 - L1MEd LINE L1 -4910 1209 967 326 291 28 56 chr4 101529422 101529601 -82759061 - L1MEd LINE L1 -5365 754 581 2160 97 3 14 chr4 101531719 101532045 -82756617 - AluSq SINE Alu 0 313 1 219 248 38 166 chr4 101532242 101532399 -82756263 + MIR SINE MIR 17 153 -109 * 226 289 59 44 chr4 101532398 101532533 -82756129 + L2 LINE L2 3171 3307 -6 483 289 30 78 chr4 101532690 101532834 -82755828 + L1MEc LINE L1 1311 1460 -4936 1750 181 20 0 chr4 101532834 101533127 -82755535 + AluJb SINE Alu 9 307 -5 483 289 30 78 chr4 101533127 101533518 -82755144 + L1MEc LINE L1 1460 1820 -4576 852 156 0 0 chr4 101533610 101533738 -82754924 + FLAM_C SINE Alu 5 132 -1 5919 231 25 10 chr4 101533765 101535034 -82753628 + L1PA12 LINE L1 10 1297 -6284 220 271 0 0 chr4 101535189 101535237 -82753425 - MER5B DNA MER1_type -6 172 125 279 0 0 0 chr4 101535332 101535363 -82753299 + (T)n Simple_repeat Simple_repeat 1 31 0 28 48 0 0 chr4 101535958 101536000 -82752662 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr4 101537525 101537553 -82751109 + AT_rich Low_complexity Low_complexity 1 28 0 192 379 0 0 chr4 101537593 101537680 -82750982 + L2 LINE L2 2666 2752 -562 23 0 0 0 chr4 101539380 101539403 -82749259 + AT_rich Low_complexity Low_complexity 1 23 0 521 174 35 0 chr4 101539899 101539985 -82748677 + U6 snRNA snRNA 13 101 -6 1727 260 3 15 chr4 101539985 101540377 -82748285 + L1M1 LINE L1 185 571 -6994 954 173 50 0 chr4 101542578 101542757 -82745905 - MER5A DNA MER1_type -1 188 1 426 267 186 18 chr4 101542932 101543153 -82745509 + MIR SINE MIR 5 262 0 218 306 94 55 chr4 101543198 101543453 -82745209 + L2 LINE L2 2493 2757 -557 13848 168 34 17 chr4 101544017 101548868 -82739794 + L1M1 LINE L1 1195 6126 -1439 6100 97 19 6 chr4 101548866 101549752 -82738910 + L1PA11 LINE L1 5276 6173 -1 * 1028 136 24 0 chr4 101549758 101549927 -82738735 + L1M1 LINE L1 6892 7064 -660 1125 134 39 47 chr4 101549929 101550161 -82738501 - THE1C LTR MaLR -2 373 144 510 229 11 117 chr4 101550242 101550421 -82738241 + MER5B DNA MER1_type 16 175 -3 748 179 93 0 chr4 101551645 101551785 -82736877 + MER5B DNA MER1_type 7 159 -19 593 261 69 11 chr4 101552600 101552788 -82735874 + MIR SINE MIR 51 249 -13 476 344 53 33 chr4 101553780 101554141 -82734521 - MLT1J2 LTR MaLR -18 432 65 271 185 31 15 chr4 101554398 101554463 -82734199 + MLT2F LTR ERVL 37 102 -561 344 239 69 64 chr4 101554843 101555031 -82733631 - L2 LINE L2 -9 3304 3116 292 301 136 10 chr4 101555918 101556021 -82732641 - L2 LINE L2 0 3313 3198 357 366 71 28 chr4 101556225 101556577 -82732085 - L2 LINE L2 -350 2964 2598 562 181 9 9 chr4 101556640 101556745 -82731917 - AluJb SINE Alu -7 305 201 4698 135 9 4 chr4 101557194 101558003 -82730659 - L1PA16 LINE L1 -2 6164 5317 5035 72 5 0 chr4 101558749 101559412 -82729250 - L1PB1 LINE L1 -1 6150 5485 4687 213 12 30 chr4 101559513 101560727 -82727935 - L1PB1 LINE L1 -819 5327 4135 1384 37 0 0 chr4 101560877 101561041 -82727621 - L1PA8 LINE L1 -2 6170 6007 7802 206 39 10 chr4 101562014 101563791 -82724871 - L1 LINE L1 -840 5306 3477 504 336 60 9 chr4 101564136 101564368 -82724294 - MIR SINE MIR -13 249 6 265 108 0 0 chr4 101564584 101564621 -82724041 + MER117 DNA MER1_type 82 118 -79 957 212 87 6 chr4 101564624 101564945 -82723717 + Charlie5 DNA MER1_type 2238 2584 -28 453 240 164 29 chr4 101565113 101565321 -82723341 - MER106A DNA MER1_type 0 236 1 323 297 97 56 chr4 101566710 101566905 -82721757 - MLT1K LTR MaLR -9 579 377 2296 107 0 7 chr4 101566910 101567219 -82721443 - AluSx SINE Alu -5 307 1 730 303 88 38 chr4 101567249 101567668 -82720994 + LTR16A LTR ERVL 1 440 -10 203 320 90 0 chr4 101567905 101567983 -82720679 + L2 LINE L2 2654 2738 -576 248 250 0 57 chr4 101568226 101568314 -82720348 - MLT1J LTR MaLR -193 318 236 663 279 47 49 chr4 101568402 101568767 -82719895 - L2 LINE L2 -2236 1078 715 627 304 53 28 chr4 101569063 101569310 -82719352 - MIR SINE MIR 0 262 10 1959 146 7 0 chr4 101569346 101569640 -82719022 + AluJb SINE Alu 1 296 -16 522 181 21 0 chr4 101570363 101570457 -82718205 + MER68 LTR ERV1 3 98 -464 2045 237 41 32 chr4 101570557 101570808 -82717854 + MER68 LTR ERV1 22 269 -293 2060 104 0 21 chr4 101570808 101571131 -82717531 - AluSg SINE Alu 0 317 1 2045 237 41 32 chr4 101571131 101571414 -82717248 + MER68 LTR ERV1 269 562 0 287 339 55 67 chr4 101571436 101571550 -82717112 - L2 LINE L2 -4 3268 3155 702 176 59 143 chr4 101571550 101571788 -82716874 + MER20 DNA MER1_type 2 219 0 287 339 55 67 chr4 101571788 101571838 -82716824 - L2 LINE L2 -117 3155 3106 241 288 50 0 chr4 101571931 101572011 -82716651 + L2 LINE L2 967 1050 -2264 1586 188 16 6 chr4 101572021 101572335 -82716327 + L1 LINE L1 3814 4130 -2016 1029 178 52 0 chr4 101572361 101572591 -82716071 + L1 LINE L1 4305 4546 -1600 13231 148 21 18 chr4 101572592 101573801 -82714861 - L1P LINE L1 -743 5403 4199 2256 97 3 28 chr4 101573801 101574120 -82714542 - AluY SINE Alu 0 311 1 13231 148 21 18 chr4 101574120 101575395 -82713267 - L1P LINE L1 -1947 4199 2944 4534 184 8 26 chr4 101575495 101576445 -82712217 - L1P LINE L1 -2609 3537 2605 27 0 0 0 chr4 101577472 101577499 -82711163 + AT_rich Low_complexity Low_complexity 1 27 0 257 287 92 11 chr4 101578050 101578137 -82710525 + MIR3 SINE MIR 13 106 -102 289 314 51 36 chr4 101578154 101578291 -82710371 - MIR SINE MIR -80 182 44 24 32 0 0 chr4 101578421 101578452 -82710210 + AT_rich Low_complexity Low_complexity 1 31 0 303 297 29 14 chr4 101579185 101579323 -82709339 + L1ME4a LINE L1 5757 5896 -225 414 174 83 9 chr4 101579397 101579506 -82709156 + L1ME4a LINE L1 6002 6118 -3 423 290 34 77 chr4 101580245 101580452 -82708210 - MIR SINE MIR -64 198 1 254 179 0 60 chr4 101581635 101581702 -82706960 - MLT1A2 LTR MaLR 0 374 312 1260 123 123 0 chr4 101581873 101582077 -82706585 + MER30 DNA MER1_type 2 230 0 369 0 0 0 chr4 101583589 101583630 -82705032 + (CA)n Simple_repeat Simple_repeat 1 41 0 180 111 0 0 chr4 101584778 101584805 -82703857 + (GGAA)n Simple_repeat Simple_repeat 3 29 0 1783 190 0 0 chr4 101585114 101585393 -82703269 + AluJo SINE Alu 1 279 -33 308 163 33 22 chr4 101585394 101585486 -82703176 + GA-rich Low_complexity Low_complexity 1 93 0 398 260 67 130 chr4 101587271 101587540 -82701122 + MLT1L LTR MaLR 218 577 -38 18918 100 26 15 chr4 101587540 101593806 -82694856 + L1PA7 LINE L1 6 6456 -13 21510 182 27 14 chr4 101594295 101599789 -82688873 + L1PA11 LINE L1 1229 7604 -8 319 298 97 0 chr4 101599952 101600076 -82688586 + L1ME3A LINE L1 6027 6162 -8 370 263 58 6 chr4 101600416 101600572 -82688090 - MER103 DNA DNA 0 166 3 2202 103 0 3 chr4 101600590 101600882 -82687780 + AluSx SINE Alu 6 296 -16 400 281 180 11 chr4 101600915 101601093 -82687569 - L2 LINE L2 -1 3312 3105 943 274 25 61 chr4 101602876 101603238 -82685424 - L2 LINE L2 -5 3308 2960 236 353 24 0 chr4 101603835 101603920 -82684742 - L2 LINE L2 0 3272 3186 2392 87 3 10 chr4 101603966 101604278 -82684384 + AluSg SINE Alu 1 310 0 2324 97 3 0 chr4 101606159 101606458 -82682204 + AluSq SINE Alu 1 300 -13 186 340 0 0 chr4 101606458 101606508 -82682154 - L2 LINE L2 -20 3293 3244 234 326 83 28 chr4 101607269 101607450 -82681212 - MIR3 SINE MIR -1 207 17 23 54 0 0 chr4 101608061 101608098 -82680564 + AT_rich Low_complexity Low_complexity 1 37 0 266 279 76 93 chr4 101608233 101608405 -82680257 - HERV16 LTR ERVL -1605 3391 3223 354 329 90 0 chr4 101608439 101608594 -82680068 - HERV16 LTR ERVL -2262 3502 3334 591 351 64 33 chr4 101608808 101609290 -82679372 - HERV16 LTR ERVL -4493 503 7 464 315 25 6 chr4 101609298 101609460 -82679202 - LTR16B LTR ERVL -2 462 298 414 287 92 23 chr4 101609937 101610111 -82678551 - MIR SINE MIR -1 261 76 24 32 0 0 chr4 101610216 101610247 -82678415 + AT_rich Low_complexity Low_complexity 1 31 0 1613 106 0 13 chr4 101610928 101611154 -82677508 + AluSg/x SINE Alu 88 310 0 835 205 107 19 chr4 101611241 101611456 -82677206 + MIR SINE MIR 15 248 -14 21 0 0 0 chr4 101612483 101612504 -82676158 + AT_rich Low_complexity Low_complexity 1 21 0 314 376 40 0 chr4 101613156 101613305 -82675357 + MIR SINE MIR 58 212 -50 194 191 0 16 chr4 101613359 101613422 -82675240 + (TAA)n Simple_repeat Simple_repeat 3 64 0 945 295 69 57 chr4 101614181 101614541 -82674121 + MLT2E LTR ERVL 10 377 -251 2951 59 50 57 chr4 101614541 101615019 -82673643 - L1MA1 LINE L1 0 6302 5828 945 295 69 57 chr4 101615019 101615095 -82673567 + MLT2E LTR ERVL 377 451 -177 734 328 47 19 chr4 101615270 101615633 -82673029 + L1MEd LINE L1 407 779 -5340 490 304 57 22 chr4 101615817 101616047 -82672615 + L1MEd LINE L1 1011 1248 -4871 2131 120 10 3 chr4 101616136 101616468 -82672194 - AluSq SINE Alu 0 313 2 561 240 0 8 chr4 101616544 101616669 -82671993 + MER96 DNA MER1_type? 51 174 -1 769 220 99 22 chr4 101616792 101617024 -82671638 - L1ME1 LINE L1 -19 6147 5898 2333 68 24 0 chr4 101617223 101617515 -82671147 + AluSp SINE Alu 1 299 -14 22 56 0 0 chr4 101617854 101617890 -82670772 + AT_rich Low_complexity Low_complexity 1 36 0 376 202 46 144 chr4 101618411 101618584 -82670078 + LTR33A LTR ERVL 41 196 -327 1081 269 123 20 chr4 101618589 101618974 -82669688 - MLT1H LTR MaLR -175 420 4 287 247 129 0 chr4 101619026 101619119 -82669543 + LTR33A LTR ERVL 369 473 -50 208 288 0 30 chr4 101619289 101619355 -82669307 + L2 LINE L2 2328 2391 -923 941 168 12 6 chr4 101619418 101619579 -82669083 + MER58B DNA MER1_type 180 341 0 275 336 80 7 chr4 101619662 101619799 -82668863 + L2 LINE L2 2607 2753 -561 216 319 116 14 chr4 101619953 101620022 -82668640 + L2 LINE L2 3208 3283 -30 432 268 61 43 chr4 101620707 101620871 -82667791 - MER63A DNA MER1_type 0 210 44 243 192 0 0 chr4 101620894 101620967 -82667695 + (TA)n Simple_repeat Simple_repeat 2 74 0 191 313 0 0 chr4 101621034 101621101 -82667561 - MIR SINE MIR -1 261 195 1100 194 30 5 chr4 101621103 101621304 -82667358 - MER63A DNA MER1_type -4 206 1 1394 173 62 111 chr4 101621569 101621985 -82666677 - MSTD LTR MaLR 0 396 1 2449 110 72 12 chr4 101623316 101623716 -82664946 - MSTA LTR MaLR -4 424 1 23341 39 3 0 chr4 101623939 101627581 -82661081 - L1PA4 LINE L1 -3 6152 2503 18264 129 52 5 chr4 101628051 101630936 -82657726 - Tigger3(Golem) DNA MER2_type -5 3024 2 324 70 0 0 chr4 101631276 101631319 -82657343 + (TG)n Simple_repeat Simple_repeat 2 44 0 260 207 49 37 chr4 101631647 101631729 -82656933 + GA-rich Low_complexity Low_complexity 2 84 0 375 335 157 51 chr4 101632824 101633296 -82655366 + L2 LINE L2 1752 2273 -1041 292 210 67 59 chr4 101633565 101633684 -82654978 + LTR16C LTR ERVL 319 438 -53 3685 145 11 14 chr4 101633698 101634347 -82654315 - L1MC1 LINE L1 0 6333 5687 1114 162 105 32 chr4 101634356 101634432 -82654230 + THE1C LTR MaLR 111 180 -195 222 37 0 0 chr4 101634432 101634459 -82654203 + (TC)n Simple_repeat Simple_repeat 1 27 0 1114 162 105 32 chr4 101634459 101634629 -82654033 + THE1C LTR MaLR 180 375 0 289 98 49 66 chr4 101634629 101634690 -82653972 - L1MC1 LINE L1 -687 5646 5587 810 135 0 0 chr4 101634697 101634808 -82653854 - AluJb SINE Alu -196 116 6 1633 143 29 4 chr4 101634817 101635097 -82653565 - L1MC1 LINE L1 -728 5605 5319 1360 153 10 0 chr4 101635295 101635504 -82653158 + AluSg/x SINE Alu 80 290 -20 515 165 17 35 chr4 101635889 101636004 -82652658 + L1PA8 LINE L1 6049 6161 -11 21 36 0 0 chr4 101636004 101636032 -82652630 + AT_rich Low_complexity Low_complexity 1 28 0 643 363 47 17 chr4 101636147 101636569 -82652093 + HERV16 LTR ERVL 709 1143 -3853 463 385 7 25 chr4 101636597 101636883 -82651779 + HERV16 LTR ERVL 1215 1495 -3501 1580 309 87 48 chr4 101636944 101638197 -82650465 + HERV16 LTR ERVL 1688 2962 -2239 454 327 63 15 chr4 101638205 101638500 -82650162 + LTR16C LTR ERVL 1 344 -147 1117 250 62 40 chr4 101638511 101638951 -82649711 + L1MB7 LINE L1 2968 3423 -2723 1718 181 17 3 chr4 101638951 101639249 -82649413 + AluJb SINE Alu 7 308 -4 1117 250 62 40 chr4 101639249 101639336 -82649326 + L1MB7 LINE L1 3423 3507 -2639 1010 196 39 15 chr4 101639357 101639561 -82649101 + AluJb SINE Alu 87 295 -17 5848 234 43 10 chr4 101639563 101641196 -82647466 + L1MB7 LINE L1 3520 5205 -941 1711 227 25 6 chr4 101641199 101641556 -82647106 + MLT2D LTR ERVL 3 366 -48 2245 96 6 16 chr4 101641557 101641869 -82646793 + AluSc SINE Alu 1 309 0 9398 129 17 22 chr4 101641925 101643083 -82645579 - Tigger1 DNA MER2_type -9 2409 1260 2120 127 3 29 chr4 101643083 101643391 -82645271 + AluSq SINE Alu 2 301 -12 9398 129 17 22 chr4 101643391 101643849 -82644813 - Tigger1 DNA MER2_type -1158 1260 801 924 86 7 36 chr4 101644203 101644343 -82644319 - AluSg/x SINE Alu -1 311 176 6003 93 12 1 chr4 101644529 101645410 -82643252 + L1PA11 LINE L1 5284 6174 0 26 0 0 0 chr4 101645519 101645545 -82643117 + AT_rich Low_complexity Low_complexity 1 26 0 4617 144 20 12 chr4 101647883 101648691 -82639971 - Tigger1 DNA MER2_type -1602 816 3 207 0 0 0 chr4 101648691 101648714 -82639948 + (TG)n Simple_repeat Simple_repeat 2 24 0 2268 159 42 68 chr4 101648750 101648863 -82639799 + L1MB7 LINE L1 5202 5316 -868 3677 52 9 0 chr4 101648863 101649324 -82639338 - L1PA6 LINE L1 -6 6148 5684 2268 159 42 68 chr4 101649324 101649849 -82638813 + L1MB7 LINE L1 5316 5832 -352 1190 180 0 60 chr4 101650161 101650444 -82638218 + L1MB7 LINE L1 5811 6076 -108 390 42 0 0 chr4 101652155 101652203 -82636459 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 27 29 0 0 chr4 101652267 101652301 -82636361 + AT_rich Low_complexity Low_complexity 1 34 0 1301 179 111 23 chr4 101652474 101652736 -82635926 + AluJb SINE Alu 1 285 -27 6202 114 69 31 chr4 101653961 101655106 -82633556 + SVA Other Other 196 1383 -3 589 182 0 23 chr4 101655128 101655274 -82633388 + L1ME1 LINE L1 5700 5827 -339 225 342 2 16 chr4 101655559 101655645 -82633017 + MIR SINE MIR 71 156 -52 780 247 123 4 chr4 101655675 101655902 -82632760 + MIR SINE MIR 1 254 -8 397 259 163 24 chr4 101656062 101656228 -82632434 + MIR3 SINE MIR 5 193 -15 21 0 0 0 chr4 101656793 101656814 -82631848 + AT_rich Low_complexity Low_complexity 1 21 0 460 214 125 125 chr4 101657007 101657503 -82631159 + L1MC4 LINE L1 7547 8042 0 30 0 0 0 chr4 101657854 101657884 -82630778 + AT_rich Low_complexity Low_complexity 1 30 0 384 274 0 0 chr4 101658234 101658336 -82630326 + L1ME LINE L1 5522 5623 -498 252 322 11 11 chr4 101658348 101658438 -82630224 + GA-rich Low_complexity Low_complexity 5 94 0 2206 113 7 3 chr4 101658731 101659031 -82629631 - AluSg SINE Alu -9 301 1 896 259 18 14 chr4 101659434 101659654 -82629008 + MIR SINE MIR 16 236 -26 180 390 110 0 chr4 101660322 101660458 -82628204 - L2 LINE L2 -5 3267 3117 1970 129 11 11 chr4 101661355 101661642 -82627020 + AluSx SINE Alu 1 287 -25 186 321 0 0 chr4 101661713 101661766 -82626896 + L2 LINE L2 3216 3268 -4 430 211 32 21 chr4 101661890 101661985 -82626677 + MER5A DNA MER1_type 11 106 -83 2377 88 7 3 chr4 101662033 101662340 -82626322 + AluSq SINE Alu 1 308 -5 205 146 188 0 chr4 101662517 101662565 -82626097 + MIR SINE MIR 84 140 -122 1314 266 74 21 chr4 101663374 101663901 -82624761 + MLT1H1 LTR MaLR 1 555 0 216 318 73 45 chr4 101665033 101665143 -82623519 + L2 LINE L2 2949 3061 -252 815 207 30 18 chr4 101665143 101665354 -82623308 + MLT1E LTR MaLR 3 203 -421 266 169 17 0 chr4 101665354 101665413 -82623249 + L1MA8 LINE L1 5430 5489 -811 1886 158 14 0 chr4 101665413 101665705 -82622957 + AluSx SINE Alu 1 296 -16 1089 176 34 4 chr4 101665705 101665943 -82622719 + L1MA8 LINE L1 6043 6287 -4 2170 125 3 3 chr4 101665988 101666301 -82622361 + AluSq SINE Alu 1 313 0 955 216 176 0 chr4 101666325 101666668 -82621994 + MLT1E LTR MaLR 222 590 -3 43 35 0 0 chr4 101666745 101666802 -82621860 + AT_rich Low_complexity Low_complexity 1 57 0 801 159 0 8 chr4 101667000 101667126 -82621536 + FLAM_C SINE Alu 1 125 -8 2810 16 0 0 chr4 101667148 101667458 -82621204 + AluY SINE Alu 1 310 -1 23 0 0 0 chr4 101667642 101667665 -82620997 + AT_rich Low_complexity Low_complexity 1 23 0 294 320 16 8 chr4 101667801 101667923 -82620739 + LTR33 LTR ERVL 15 137 -384 615 147 0 0 chr4 101667947 101668063 -82620599 + (ATATG)n Simple_repeat Simple_repeat 2 117 0 38 68 0 0 chr4 101668066 101668139 -82620523 + AT_rich Low_complexity Low_complexity 1 73 0 431 185 205 26 chr4 101668205 101668400 -82620262 - MER33 DNA MER1_type -94 230 1 274 257 74 57 chr4 101668455 101668746 -82619916 + LTR33 LTR ERVL 186 518 -3 2027 107 7 4 chr4 101669041 101669312 -82619350 - AluSq SINE Alu -22 291 20 2270 77 42 0 chr4 101669436 101669723 -82618939 - AluSp SINE Alu -14 299 1 1360 202 79 0 chr4 101669731 101669998 -82618664 - AluJo SINE Alu -23 289 2 517 335 88 48 chr4 101672182 101672728 -82615934 - MLT1K LTR MaLR -10 578 11 612 296 109 89 chr4 101673997 101674431 -82614231 - MLT1K LTR MaLR -6 582 133 1730 138 34 41 chr4 101674431 101674722 -82613940 + AluSx SINE Alu 1 289 -23 612 296 109 89 chr4 101674722 101674848 -82613814 - MLT1K LTR MaLR -455 133 11 314 335 109 28 chr4 101674870 101675164 -82613498 + L2 LINE L2 2790 3093 -179 1888 143 3 31 chr4 101675612 101675906 -82612756 - AluSx SINE Alu -26 286 1 245 284 88 10 chr4 101675906 101676008 -82612654 + MIR SINE MIR 72 181 -81 14158 137 28 10 chr4 101676023 101677537 -82611125 - Tigger1 DNA MER2_type 0 2418 843 2461 81 0 3 chr4 101677537 101677847 -82610815 - AluSc SINE Alu 0 309 1 14158 137 28 10 chr4 101677847 101678705 -82609957 - Tigger1 DNA MER2_type -1575 843 2 2367 97 3 3 chr4 101678856 101679164 -82609498 + AluSq SINE Alu 1 308 -5 463 216 0 0 chr4 101679339 101679427 -82609235 + Tigger1 DNA MER2_type 2318 2405 -13 1313 326 116 35 chr4 101679610 101680736 -82607926 + L2 LINE L2 1606 2821 -493 406 321 43 59 chr4 101680809 101680996 -82607666 + L2 LINE L2 2897 3080 -192 423 0 0 0 chr4 101682400 101682447 -82606215 + (CA)n Simple_repeat Simple_repeat 2 48 0 208 171 24 0 chr4 101682451 101682492 -82606170 + CT-rich Low_complexity Low_complexity 1 42 0 230 235 173 12 chr4 101682874 101682955 -82605707 + MIR SINE MIR 47 140 -122 181 301 12 36 chr4 101682986 101683069 -82605593 + MIR SINE MIR 132 212 -50 246 32 0 0 chr4 101683549 101683580 -82605082 + (TG)n Simple_repeat Simple_repeat 2 32 0 283 234 30 144 chr4 101684680 101684847 -82603815 + MER5B DNA MER1_type 1 148 -30 245 320 0 48 chr4 101685501 101685604 -82603058 + MIR SINE MIR 152 249 -13 624 161 0 51 chr4 101686317 101686435 -82602227 - FRAM SINE Alu -12 164 53 32 75 0 0 chr4 101686540 101686607 -82602055 + AT_rich Low_complexity Low_complexity 1 67 0 35 41 0 0 chr4 101686697 101686746 -82601916 + AT_rich Low_complexity Low_complexity 1 49 0 400 102 0 0 chr4 101687070 101687129 -82601533 + AluSg SINE Alu 24 82 -228 868 118 8 0 chr4 101687131 101687258 -82601404 + AluSg/x SINE Alu 185 312 0 332 252 69 30 chr4 101688335 101688466 -82600196 - MIR SINE MIR -126 136 1 2056 77 84 0 chr4 101688533 101688818 -82599844 + AluSg SINE Alu 1 309 -1 224 250 0 75 chr4 101689948 101690068 -82598594 + G-rich Low_complexity Low_complexity 4 114 0 312 306 157 48 chr4 101690331 101690625 -82598037 - L1M2 LINE L1 -5848 1001 676 263 154 33 44 chr4 101691822 101691905 -82596757 + CT-rich Low_complexity Low_complexity 1 84 -6 255 61 0 0 chr4 101691905 101691938 -82596724 + (CA)n Simple_repeat Simple_repeat 1 33 0 1592 184 3 7 chr4 101694896 101695178 -82593484 + AluJo SINE Alu 5 285 -27 37 62 0 0 chr4 101695313 101695378 -82593284 + AT_rich Low_complexity Low_complexity 1 65 0 549 152 136 32 chr4 101695424 101695549 -82593113 + FLAM_C SINE Alu 1 138 -5 1519 107 0 0 chr4 101695647 101695852 -82592810 + AluSx SINE Alu 1 205 -107 1928 135 3 14 chr4 101695852 101696148 -82592514 + AluSx SINE Alu 3 295 -17 2070 136 3 0 chr4 101696441 101696749 -82591913 - AluSx SINE Alu -1 311 3 938 175 34 112 chr4 101696936 101697205 -82591457 - L1MD2 LINE L1 -3 6356 6109 821 229 16 31 chr4 101697412 101697604 -82591058 - MIR SINE MIR -71 191 3 2235 197 73 0 chr4 101697676 101698168 -82590494 + L1MB7 LINE L1 5657 6184 0 428 151 151 0 chr4 101698302 101698375 -82590287 + AluJ/FLAM SINE Alu 17 100 -212 1720 175 0 0 chr4 101698599 101698890 -82589772 + AluJb SINE Alu 3 293 -19 28 29 0 0 chr4 101701164 101701199 -82587463 + AT_rich Low_complexity Low_complexity 1 35 0 2002 133 10 0 chr4 101701522 101701830 -82586832 - AluSx SINE Alu -1 311 1 2247 92 3 9 chr4 101703094 101703409 -82585253 - AluSp SINE Alu 0 313 1 2139 66 37 0 chr4 101703598 101703871 -82584791 + AluSc SINE Alu 11 293 -16 225 83 0 0 chr4 101704613 101704649 -82584013 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1929 97 0 0 chr4 101704651 101704910 -82583752 - AluSg1 SINE Alu -32 277 19 399 286 23 23 chr4 101707218 101707351 -82581311 - MIR3 SINE MIR -1 207 75 439 329 49 6 chr4 101707362 101707526 -82581136 - MIR SINE MIR 0 262 92 441 0 0 0 chr4 101707661 101707710 -82580952 + (GA)n Simple_repeat Simple_repeat 1 49 0 306 0 0 0 chr4 101707709 101707743 -82580919 + (TG)n Simple_repeat Simple_repeat 2 35 0 * 1997 113 68 53 chr4 101707743 101708141 -82580521 - L1MA9 LINE L1 -4 6308 5905 504 348 14 19 chr4 101708148 101708358 -82580304 + MIR SINE MIR 48 256 -6 2146 115 0 3 chr4 101708947 101709251 -82579411 + AluSx SINE Alu 1 303 -9 286 306 24 47 chr4 101709749 101709919 -82578743 - HAL1b LINE L1 -437 911 746 206 254 0 28 chr4 101710390 101710461 -82578201 + T-rich Low_complexity Low_complexity 2 70 0 739 283 113 30 chr4 101710508 101711099 -82577563 - HAL1 LINE L1 -849 1658 1019 397 191 57 14 chr4 101711216 101711357 -82577305 + (TATATG)n Simple_repeat Simple_repeat 5 151 0 1380 317 15 26 chr4 101711807 101712389 -82576273 + L2 LINE L2 2495 3067 -246 6382 144 10 3 chr4 101712444 101713998 -82574664 - L1PB1 LINE L1 0 6151 4586 486 221 38 46 chr4 101714044 101714175 -82574487 + L2 LINE L2 3175 3304 -9 858 191 0 7 chr4 101714214 101714361 -82574301 + FAM SINE Alu 22 167 -18 384 243 47 0 chr4 101715011 101715118 -82573544 + L2 LINE L2 3199 3310 -3 230 297 0 54 chr4 101715874 101715948 -82572714 + MIR3 SINE MIR 118 187 -21 2582 147 14 25 chr4 101716014 101716451 -82572211 - Tigger2a DNA MER2_type 0 434 3 1991 110 0 48 chr4 101717092 101717401 -82571261 + AluSg SINE Alu 1 294 -16 6983 189 52 42 chr4 101718270 101719973 -82568689 + L1MC1 LINE L1 76 1987 -4620 5531 193 39 21 chr4 101719976 101721655 -82567007 + L1MC1 LINE L1 4244 5981 -632 2058 131 0 16 chr4 101721655 101721969 -82566693 + AluSx SINE Alu 1 309 -3 5531 193 39 21 chr4 101721969 101722577 -82566085 + L1MC1 LINE L1 5981 6576 -37 326 0 0 0 chr4 101722601 101722642 -82566020 + L1PA3 LINE L1 6112 6152 -3 1897 122 68 49 chr4 101722696 101723064 -82565598 - THE1C LTR MaLR 0 375 1 182 218 92 58 chr4 101723578 101723665 -82564997 + L3 LINE CR1 1034 1123 -454 2046 128 10 0 chr4 101724497 101724793 -82563869 - AluSx SINE Alu -13 299 1 34 55 0 0 chr4 101725815 101725870 -82562792 + AT_rich Low_complexity Low_complexity 1 55 0 229 392 94 6 chr4 101727335 101727516 -82561146 - MIR3 SINE MIR -1 207 11 26 30 0 0 chr4 101728050 101728083 -82560579 + AT_rich Low_complexity Low_complexity 1 33 0 213 94 0 0 chr4 101728575 101728607 -82560055 + (TG)n Simple_repeat Simple_repeat 2 33 0 2324 77 3 0 chr4 101729355 101729653 -82559009 + AluY SINE Alu 3 301 -10 1886 161 0 10 chr4 101729799 101730109 -82558553 + AluJb SINE Alu 1 307 -5 2205 105 13 3 chr4 101730323 101730627 -82558035 - AluSx SINE Alu -5 307 1 3895 176 7 17 chr4 101731660 101732406 -82556256 + L1MB4 LINE L1 5443 6180 0 1955 192 31 48 chr4 101732416 101732895 -82555767 + L1MB7 LINE L1 5694 6164 -20 337 291 190 13 chr4 101732955 101733037 -82555625 + MIR SINE MIR 52 118 -144 240 111 0 0 chr4 101733037 101733073 -82555589 + (TAA)n Simple_repeat Simple_repeat 2 37 0 337 291 190 13 chr4 101733073 101733148 -82555514 + MIR SINE MIR 118 237 -25 221 387 40 16 chr4 101733602 101733726 -82554936 + L2 LINE L2 3134 3260 -12 245 286 264 0 chr4 101733772 101733912 -82554750 + MER5B DNA MER1_type 2 178 0 642 198 0 0 chr4 101734923 101735039 -82553623 - FLAM_A SINE Alu -16 117 2 224 300 169 12 chr4 101736248 101736408 -82552254 + MIR SINE MIR 71 255 -7 805 316 58 29 chr4 101736464 101736840 -82551822 - L2 LINE L2 -4 3309 2923 227 307 156 22 chr4 101737381 101737606 -82551056 - L2 LINE L2 -686 2628 2374 374 296 72 7 chr4 101737800 101737952 -82550710 - MIR3 SINE MIR -4 204 43 21 0 0 0 chr4 101737973 101737994 -82550668 + AT_rich Low_complexity Low_complexity 1 21 0 193 230 138 23 chr4 101738990 101739077 -82549585 + MIR SINE MIR 88 184 -78 2001 163 15 15 chr4 101739305 101739648 -82549014 + MER2 DNA MER2_type 1 343 -1 275 343 71 6 chr4 101740546 101740715 -82547947 + L2 LINE L2 3111 3290 -23 22 0 0 0 chr4 101741715 101741737 -82546925 + AT_rich Low_complexity Low_complexity 1 22 0 2060 113 3 0 chr4 101741909 101742191 -82546471 + AluSq SINE Alu 1 283 -30 914 88 0 0 chr4 101742078 101742191 -82546471 + AluSp/q SINE Alu 171 319 0 243 28 0 28 chr4 101742191 101742227 -82546435 + (TAAA)n Simple_repeat Simple_repeat 3 180 0 264 333 11 32 chr4 101742556 101742649 -82546013 - L3 LINE CR1 -57 1520 1430 446 337 33 25 chr4 101743106 101743349 -82545313 - L3 LINE CR1 -562 1015 771 6350 78 72 4 chr4 101743390 101744243 -82544419 - L1PA13 LINE L1 -2 6161 5276 189 0 0 0 chr4 101744243 101744264 -82544398 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 6350 78 72 4 chr4 101744264 101744429 -82544233 - L1PA13 LINE L1 -887 5276 5124 2213 129 0 0 chr4 101744504 101744813 -82543849 - AluSc SINE Alu 0 309 1 1351 246 30 12 chr4 101745278 101745611 -82543051 - MER74B LTR ERVL -283 339 1 230 306 15 13 chr4 101746268 101746343 -82542319 + MIR SINE MIR 30 105 -103 577 245 45 7 chr4 101746588 101746743 -82541919 + MIR SINE MIR 102 262 0 306 0 0 0 chr4 101748023 101748057 -82540605 + (TG)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr4 101748058 101748082 -82540580 + AT_rich Low_complexity Low_complexity 1 24 0 626 302 94 71 chr4 101748278 101749046 -82539616 + L1M4 LINE L1 4371 5166 -980 1581 91 9 9 chr4 101749046 101749316 -82539346 + AluSc SINE Alu 61 330 0 626 302 94 71 chr4 101749316 101749449 -82539213 + L1M4 LINE L1 5166 5294 -852 1326 300 73 23 chr4 101749742 101750222 -82538440 - MLT1K LTR MaLR -62 526 23 2883 181 27 14 chr4 101750227 101750819 -82537843 - L1MD1 LINE L1 -14 6228 5629 1372 131 14 33 chr4 101751733 101751940 -82536722 + AluJo SINE Alu 11 215 -97 764 164 0 0 chr4 101751940 101752056 -82536606 - AluJo/FLAM SINE Alu -186 116 1 2393 62 7 3 chr4 101752063 101752352 -82536310 - AluY SINE Alu -20 291 2 936 133 12 18 chr4 101752788 101752953 -82535709 - AluSg/x SINE Alu -16 294 131 180 0 0 0 chr4 101753079 101753099 -82535563 + (A)n Simple_repeat Simple_repeat 1 20 0 334 360 34 6 chr4 101753960 101754135 -82534527 - L2 LINE L2 -676 2638 2459 627 312 102 33 chr4 101754500 101754862 -82533800 + LTR67 LTR ERVL 113 499 -58 848 182 14 0 chr4 101754881 101755029 -82533633 - FRAM SINE Alu -16 150 1 2129 120 3 0 chr4 101755044 101755336 -82533326 - AluSx SINE Alu -17 295 3 28 29 0 0 chr4 101755340 101755375 -82533287 + AT_rich Low_complexity Low_complexity 1 35 0 2524 49 3 3 chr4 101755375 101755682 -82532980 - AluY SINE Alu 0 311 5 675 173 68 0 chr4 101755743 101755898 -82532764 + MER67D LTR ERV1 1 165 -359 21 0 0 0 chr4 101756121 101756142 -82532520 + AT_rich Low_complexity Low_complexity 1 21 0 182 195 16 55 chr4 101757091 101757219 -82531443 + (TATATG)n Simple_repeat Simple_repeat 4 126 0 870 128 0 0 chr4 101757468 101757585 -82531077 - AluSg/x SINE Alu -49 261 145 2189 106 3 3 chr4 101757587 101757889 -82530773 - AluSp SINE Alu -11 302 1 2177 99 33 3 chr4 101757891 101758195 -82530467 - AluSq SINE Alu 0 313 1 1057 137 68 119 chr4 101758841 101759005 -82529657 + MER21A LTR ERV1 1 147 -784 1538 152 11 26 chr4 101759005 101759269 -82529393 - AluJb SINE Alu -7 305 46 1057 137 68 119 chr4 101759269 101759382 -82529280 + MER21A LTR ERV1 147 264 -667 2570 171 94 27 chr4 101759388 101759909 -82528753 + MER21A LTR ERV1 376 931 0 5635 195 74 18 chr4 101760095 101761549 -82527113 + L1 LINE L1 3199 4734 -1412 189 262 0 0 chr4 101762728 101762789 -82525873 + (TA)n Simple_repeat Simple_repeat 2 62 0 1912 161 0 7 chr4 101763834 101764144 -82524518 - AluJb SINE Alu -4 308 1 228 347 73 8 chr4 101764441 101764565 -82524097 - MIR SINE MIR -61 147 16 21 0 0 0 chr4 101764849 101764870 -82523792 + AT_rich Low_complexity Low_complexity 1 21 0 287 246 0 0 chr4 101765157 101765214 -82523448 + L2 LINE L2 3214 3270 -2 224 263 41 23 chr4 101765572 101765743 -82522919 + (CATTA)n Simple_repeat Simple_repeat 4 177 0 27 29 0 0 chr4 101765872 101765906 -82522756 + AT_rich Low_complexity Low_complexity 1 34 0 2294 97 10 6 chr4 101766020 101766331 -82522331 + AluSx SINE Alu 1 312 0 360 64 0 0 chr4 101766336 101766383 -82522279 + (CA)n Simple_repeat Simple_repeat 2 48 0 3568 17 0 0 chr4 101766484 101766895 -82521767 + L1HS LINE L1 5745 6155 0 27 49 0 0 chr4 101767193 101767234 -82521428 + AT_rich Low_complexity Low_complexity 1 41 0 699 254 53 14 chr4 101768229 101768438 -82520224 + MIR SINE MIR 44 260 -2 565 168 88 0 chr4 101768806 101768931 -82519731 - L1MC1 LINE L1 -156 6177 6042 28 0 0 0 chr4 101769085 101769113 -82519549 + AT_rich Low_complexity Low_complexity 1 28 0 1887 184 13 29 chr4 101771824 101771925 -82516737 - L1MB2 LINE L1 -267 5904 5803 1758 129 85 19 chr4 101771925 101772242 -82516420 - MER44D DNA MER2_type 0 609 2 1887 184 13 29 chr4 101772242 101772520 -82516142 - L1MB2 LINE L1 -368 5803 5531 768 286 12 62 chr4 101772910 101773232 -82515430 - L2 LINE L2 0 3313 3008 290 359 16 16 chr4 101774325 101774453 -82514209 + MIR3 SINE MIR 78 205 -3 960 265 64 0 chr4 101775007 101775226 -82513436 + Tigger7 DNA MER2_type 2 234 -2253 459 193 0 83 chr4 101775232 101775341 -82513321 + Tigger7 DNA MER2_type 2388 2487 0 2201 110 3 7 chr4 101775357 101775666 -82512996 - AluSx SINE Alu -4 308 1 3035 161 57 45 chr4 101775680 101776210 -82512452 - L1MA4A LINE L1 -243 6060 5538 2465 58 7 10 chr4 101776210 101776519 -82512143 + AluY SINE Alu 1 308 -3 3035 161 57 45 chr4 101776519 101776554 -82512108 - L1MA4A LINE L1 -765 5538 5505 186 43 0 0 chr4 101776554 101776577 -82512085 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 3035 161 57 45 chr4 101776577 101776695 -82511967 - L1MA4A LINE L1 -798 5505 5368 2545 202 30 5 chr4 101776760 101777335 -82511327 - L1MA4A LINE L1 -760 5386 4798 363 96 0 0 chr4 101777335 101777387 -82511275 + (TA)n Simple_repeat Simple_repeat 1 52 0 2192 106 13 7 chr4 101778471 101778773 -82509889 - AluSp SINE Alu -9 304 1 518 320 73 12 chr4 101780642 101780889 -82507773 - L2 LINE L2 -785 2529 2268 270 0 0 0 chr4 101781226 101781256 -82507406 + (TA)n Simple_repeat Simple_repeat 2 31 0 28 0 0 0 chr4 101782819 101782847 -82505815 + AT_rich Low_complexity Low_complexity 1 28 0 693 311 118 19 chr4 101785763 101786178 -82502484 - L2 LINE L2 -627 2687 2232 1525 336 103 18 chr4 101786238 101787394 -82501268 + L2 LINE L2 2052 3310 -3 21 71 0 0 chr4 101788604 101788646 -82500016 + AT_rich Low_complexity Low_complexity 1 42 0 2225 111 3 0 chr4 101788648 101788945 -82499717 + AluSx SINE Alu 1 298 -14 191 268 116 36 chr4 101789683 101789795 -82498867 + L2 LINE L2 3175 3295 -18 1523 148 44 0 chr4 101789810 101790060 -82498602 - AluSx SINE Alu -23 289 29 2425 63 20 0 chr4 101791090 101791393 -82497269 - AluSp SINE Alu -4 309 1 21 0 0 0 chr4 101791426 101791447 -82497215 + AT_rich Low_complexity Low_complexity 1 21 0 2337 98 3 0 chr4 101791836 101792133 -82496529 - AluSx SINE Alu -14 298 1 21 36 0 0 chr4 101792209 101792237 -82496425 + AT_rich Low_complexity Low_complexity 1 28 0 1571 132 35 0 chr4 101792499 101792726 -82495936 - AluSq SINE Alu -78 235 1 451 241 57 24 chr4 101793576 101793788 -82494874 - L1MC5 LINE L1 -42 7919 7701 340 249 32 54 chr4 101794015 101794200 -82494462 - L1MC5 LINE L1 -444 7517 7337 2272 122 0 0 chr4 101794213 101794525 -82494137 - AluSx SINE Alu 0 312 1 10608 28 0 0 chr4 101794724 101796113 -82492549 - L1P2 LINE L1 -687 5467 4079 1083 73 0 0 chr4 101796110 101796261 -82492401 - L1P LINE L1 -1222 4924 4774 * 321 40 60 0 chr4 101799323 101799373 -82489289 - L1M2 LINE L1 -534 5757 5705 361 259 204 14 chr4 101800014 101800161 -82488501 - MIR3 SINE MIR -3 205 31 1608 162 18 11 chr4 101800585 101800863 -82487799 - AluJb SINE Alu -3 309 30 566 136 0 0 chr4 101800883 101800964 -82487698 - AluJ/FLAM SINE Alu -225 87 7 3711 108 69 12 chr4 101801516 101801991 -82486671 - L1MA4A LINE L1 0 6303 5779 270 81 0 0 chr4 101801991 101802028 -82486634 + (TG)n Simple_repeat Simple_repeat 2 38 0 3711 108 69 12 chr4 101802028 101802208 -82486454 - L1MA4A LINE L1 -524 5779 5611 296 259 220 28 chr4 101802226 101802508 -82486154 - L1M2b LINE L1 -5746 1463 1128 2918 50 0 0 chr4 101803164 101803522 -82485140 - L1PA4 LINE L1 -5 6150 5793 331 301 108 75 chr4 101803855 101804134 -82484528 - L2 LINE L2 0 3272 2985 291 316 184 0 chr4 101804255 101804413 -82484249 - L2 LINE L2 -450 2864 2678 6568 119 65 11 chr4 101807203 101808318 -82480344 + Tigger1 DNA MER2_type 1 1175 -1243 36792 52 3 2 chr4 101808418 101813720 -82474942 + L1P1 LINE L1 476 5781 -374 517 281 50 25 chr4 101815085 101815245 -82473417 + MIR SINE MIR 12 175 -87 283 194 0 65 chr4 101815742 101815804 -82472858 + MIR SINE MIR 176 233 -29 2278 120 0 0 chr4 101816105 101816414 -82472248 - AluSx SINE Alu -3 309 1 393 325 101 42 chr4 101817512 101817749 -82470913 + L2 LINE L2 2249 2499 -815 242 116 23 0 chr4 101817750 101817793 -82470869 + CT-rich Low_complexity Low_complexity 1 44 0 2094 135 3 0 chr4 101817809 101818113 -82470549 - AluSx SINE Alu -7 305 1 23 54 0 0 chr4 101818365 101818402 -82470260 + AT_rich Low_complexity Low_complexity 1 37 0 496 243 158 26 chr4 101818469 101818621 -82470041 - MER5A DNA MER1_type -6 183 12 1535 110 16 4 chr4 101819212 101819466 -82469196 - L1MA5A LINE L1 -5 6292 6036 198 167 0 0 chr4 101819553 101819589 -82469073 + (TG)n Simple_repeat Simple_repeat 2 37 0 204 354 0 0 chr4 101819746 101819825 -82468837 - MIR SINE MIR -4 258 180 400 371 60 35 chr4 101820403 101820805 -82467857 + L2 LINE L2 2553 2964 -350 285 227 146 36 chr4 101820807 101820917 -82467745 + L2 LINE L2 3148 3269 -3 25 0 0 0 chr4 101821151 101821176 -82467486 + AT_rich Low_complexity Low_complexity 1 25 0 8982 222 56 44 chr4 101821833 101822481 -82466181 - L1 LINE L1 -3087 3761 3122 5423 77 23 4 chr4 101822481 101823220 -82465442 + L1PA8 LINE L1 5418 6170 -2 8982 222 56 44 chr4 101823220 101824371 -82464291 - L1 LINE L1 -3726 3122 1985 1849 135 10 55 chr4 101824371 101824683 -82463979 - AluSx SINE Alu -14 298 1 8982 222 56 44 chr4 101824683 101826426 -82462236 - L1 LINE L1 -4863 1985 178 1553 166 55 7 chr4 101826745 101827052 -82461610 - MER2 DNA MER2_type -23 322 1 206 212 221 18 chr4 101827112 101827225 -82461437 + MIR SINE MIR 127 262 0 28 29 0 0 chr4 101827731 101827766 -82460896 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr4 101827914 101827940 -82460722 + AT_rich Low_complexity Low_complexity 1 26 0 387 303 86 45 chr4 101828344 101828588 -82460074 + MIR SINE MIR 6 259 -3 944 217 35 88 chr4 101828662 101829035 -82459627 + L1ME3A LINE L1 5813 6165 -5 334 258 0 45 chr4 101829103 101829192 -82459470 - L2 LINE L2 0 3313 3229 1392 45 0 23 chr4 101829203 101829380 -82459282 + L1PA3 LINE L1 5983 6155 0 213 39 0 0 chr4 101829410 101829436 -82459226 + (A)n Simple_repeat Simple_repeat 1 26 0 1507 196 14 0 chr4 101829715 101829991 -82458671 + 7SLRNA srpRNA srpRNA 13 292 -28 332 297 138 96 chr4 101830278 101830915 -82457747 + L1M4 LINE L1 2 665 -5877 453 84 0 0 chr4 101832192 101832263 -82456399 + (TTTTA)n Simple_repeat Simple_repeat 1 71 0 6866 47 6 1 chr4 101832263 101833270 -82455392 - L1PA5 LINE L1 -24 6130 5119 10651 30 4 0 chr4 101833309 101835347 -82453315 - L1PA3 LINE L1 -2 6153 4110 991 253 113 48 chr4 101835456 101835993 -82452669 - MER114 LTR ERV 0 648 65 2020 134 7 3 chr4 101835993 101836291 -82452371 + AluSg SINE Alu 1 299 -11 991 253 113 48 chr4 101836291 101836361 -82452301 - MER114 LTR ERV -583 65 1 21 71 0 0 chr4 101836385 101836427 -82452235 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr4 101836498 101836527 -82452135 + AT_rich Low_complexity Low_complexity 1 29 0 3101 201 19 11 chr4 101836599 101837296 -82451366 - L1MB4 LINE L1 -3 6177 5476 324 264 0 0 chr4 101837297 101837388 -82451274 + T-rich Low_complexity Low_complexity 1 94 -12 1641 158 0 0 chr4 101837388 101837628 -82451034 - AluJb SINE Alu -72 240 1 324 264 0 0 chr4 101837628 101837642 -82451020 + T-rich Low_complexity Low_complexity 93 106 0 296 167 0 0 chr4 101837653 101837709 -82450953 - L1MB4 LINE L1 -693 5481 5426 454 302 52 86 chr4 101837810 101838273 -82450389 - L2 LINE L2 -642 2672 2226 2283 166 32 7 chr4 101838328 101838738 -82449924 - MSTB LTR MaLR -4 422 3 1098 156 86 4 chr4 101839049 101839306 -82449356 - MER45B DNA AcHobo -7 1033 756 602 290 94 79 chr4 101839577 101839905 -82448757 - MER45C DNA AcHobo -810 143 439 12440 89 13 13 chr4 101840011 101842627 -82446035 - L1PA8 LINE L1 -112 6060 3451 464 216 239 11 chr4 101842754 101842930 -82445732 - MIR SINE MIR -26 236 21 2623 141 7 0 chr4 101843444 101843884 -82444778 + L1P LINE L1 1 443 -5703 22 0 0 0 chr4 101845877 101845899 -82442763 + AT_rich Low_complexity Low_complexity 1 22 0 651 217 28 28 chr4 101846001 101846144 -82442518 - MER5A DNA MER1_type 0 189 47 1691 223 97 62 chr4 101846144 101846744 -82441918 + MLT1E2 LTR MaLR 1 623 -3 239 250 0 0 chr4 101846748 101846796 -82441866 - MER5A DNA MER1_type -141 48 1 198 349 0 0 chr4 101846910 101846973 -82441689 + MIR SINE MIR 184 246 -16 703 304 58 5 chr4 101847016 101847223 -82441439 - MIR SINE MIR -34 228 11 347 107 0 0 chr4 101847334 101847390 -82441272 - AluSg SINE Alu -4 298 243 773 112 53 22 chr4 101847788 101847951 -82440711 + L1MA4A LINE L1 5683 5848 -337 1886 114 0 4 chr4 101847951 101848206 -82440456 - AluSg SINE Alu -56 254 1 189 377 14 0 chr4 101848256 101848325 -82440337 - L2 LINE L2 -2 3311 3242 579 146 111 23 chr4 101848494 101848665 -82439997 + MER53 DNA DNA 4 189 0 437 184 139 51 chr4 101849848 101850006 -82438656 - LTR40b LTR ERVL 0 462 304 254 143 0 36 chr4 101850157 101850213 -82438449 + L1ME LINE L1 5772 5825 -296 2016 100 42 14 chr4 101850359 101850648 -82438014 + AluSq SINE Alu 1 297 -16 487 215 0 8 chr4 101850754 101850875 -82437787 + MLT1B LTR MaLR 56 175 -215 1938 110 37 4 chr4 101851187 101851487 -82437175 - AluSq SINE Alu 0 309 1 2408 153 69 6 chr4 101851772 101852263 -82436399 - L1MA4A LINE L1 -57 6246 5725 371 175 47 117 chr4 101852513 101852684 -82435978 + L1M4c LINE L1 779 937 -5447 1971 166 21 126 chr4 101852691 101852832 -82435830 + L1MB7 LINE L1 5300 5454 -729 2026 152 3 0 chr4 101852832 101853129 -82435533 + AluSx SINE Alu 1 298 -14 1971 166 21 126 chr4 101853129 101854030 -82434632 + L1MB7 LINE L1 5454 6183 0 348 236 114 8 chr4 101854044 101854167 -82434495 + L1M4c LINE L1 964 1099 -5181 28301 111 12 74 chr4 101854182 101860729 -82427933 + L1PA7 LINE L1 12 6142 -12 967 221 76 3 chr4 101860737 101861040 -82427622 + L1M4c LINE L1 1082 1406 -4978 539 193 9 0 chr4 101861046 101861155 -82427507 + L1M4c LINE L1 1492 1601 -4783 388 179 13 0 chr4 101862546 101862633 -82426029 - MLT2B3 LTR ERVL -205 310 223 226 180 160 0 chr4 101862813 101862863 -82425799 - MLT1K LTR MaLR -1 587 530 250 294 145 9 chr4 101863225 101863446 -82425216 + L2 LINE L2 2232 2482 -832 503 311 132 5 chr4 101863474 101863686 -82424976 - MIR SINE MIR 0 262 24 2016 108 7 17 chr4 101863692 101864004 -82424658 - AluSx SINE Alu 0 309 1 1872 162 7 10 chr4 101864258 101864554 -82424108 - AluJb SINE Alu -17 295 1 210 37 0 0 chr4 101864558 101864585 -82424077 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 594 243 135 41 chr4 101864956 101865429 -82423233 + MLT1E LTR MaLR 1 593 0 21 0 0 0 chr4 101867112 101867133 -82421529 + AT_rich Low_complexity Low_complexity 1 21 0 5234 76 138 1 chr4 101868286 101869013 -82419649 + LTR12 LTR ERV1 1 826 0 23 0 0 0 chr4 101869565 101869588 -82419074 + AT_rich Low_complexity Low_complexity 1 23 0 183 250 36 36 chr4 101870021 101870077 -82418585 - L2 LINE L2 -86 3227 3172 1178 266 94 27 chr4 101871271 101871909 -82416753 + L2 LINE L2 2633 3309 -4 279 224 131 37 chr4 101872557 101872664 -82415998 + MER5A DNA MER1_type 50 166 -23 279 298 53 18 chr4 101872571 101872685 -82415977 - MER5A DNA MER1_type -58 131 14 23 68 0 0 chr4 101873367 101873411 -82415251 + AT_rich Low_complexity Low_complexity 1 44 0 1287 151 42 67 chr4 101873466 101873750 -82414912 - MSTB LTR MaLR 0 426 150 2155 135 16 39 chr4 101873750 101874095 -82414567 + THE1C LTR MaLR 1 338 -37 2426 71 10 3 chr4 101874095 101874403 -82414259 - AluY SINE Alu -1 310 1 2155 135 16 39 chr4 101874403 101874441 -82414221 + THE1C LTR MaLR 338 375 0 9699 112 35 6 chr4 101874448 101875967 -82412695 + THE1C-int LTR MaLR 18 1580 0 1950 173 30 16 chr4 101875967 101876337 -82412325 + THE1C LTR MaLR 1 375 0 343 93 0 19 chr4 101876360 101876414 -82412248 - MSTB LTR MaLR -373 53 1 315 265 20 65 chr4 101876788 101877010 -82411652 + MIR SINE MIR 20 256 -6 248 315 0 0 chr4 101877033 101877087 -82411575 + L2 LINE L2 3242 3295 -18 21 36 0 0 chr4 101878527 101878555 -82410107 + AT_rich Low_complexity Low_complexity 1 28 0 7696 22 0 0 chr4 101879180 101880562 -82408100 - L1PA3 LINE L1 -3 6152 4771 28 71 0 0 chr4 101880798 101880854 -82407808 + AT_rich Low_complexity Low_complexity 1 56 0 399 21 0 0 chr4 101882148 101882196 -82406466 + (TC)n Simple_repeat Simple_repeat 1 48 0 225 0 0 0 chr4 101882649 101882674 -82405988 + (TG)n Simple_repeat Simple_repeat 1 25 0 221 214 0 0 chr4 101883735 101883777 -82404885 + MIR3 SINE MIR 119 160 -48 1723 129 79 148 chr4 101883872 101884330 -82404332 + MSTB LTR MaLR 1 426 0 22 0 0 0 chr4 101884473 101884495 -82404167 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr4 101885993 101886037 -82402625 + AT_rich Low_complexity Low_complexity 1 44 0 897 181 113 15 chr4 101886407 101886706 -82401956 - MER33 DNA MER1_type -6 318 1 2306 86 0 0 chr4 101886782 101887072 -82401590 - AluSc SINE Alu -19 290 1 1074 287 68 28 chr4 101887267 101887517 -82401145 - L1MC4a LINE L1 -582 5584 5616 1939 152 0 7 chr4 101887517 101887807 -82400855 - AluSx SINE Alu -24 288 1 1074 287 68 28 chr4 101887807 101888170 -82400492 - L1MC4a LINE L1 -549 5617 5270 526 296 156 50 chr4 101888232 101889131 -82399531 - L1MC4a LINE L1 -1007 5139 4146 3427 129 46 11 chr4 101889363 101889974 -82398688 - L1PA15 LINE L1 -25 6140 5509 219 394 101 0 chr4 101889991 101890189 -82398473 - L2 LINE L2 -212 3060 2843 2382 98 0 0 chr4 101890569 101890865 -82397797 + AluSx SINE Alu 5 300 -12 225 0 0 0 chr4 101891297 101891322 -82397340 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 6570 127 43 32 chr4 101895441 101896578 -82392084 - Tigger1 DNA MER2_type 0 2418 1269 4400 230 94 23 chr4 101897106 101897499 -82391163 - L1MB7 LINE L1 -19 6165 5801 2008 137 11 0 chr4 101897499 101897784 -82390878 - AluSx SINE Alu -24 288 1 4400 230 94 23 chr4 101897784 101898856 -82389806 - L1MB7 LINE L1 -383 5801 4806 720 187 8 15 chr4 101898856 101898990 -82389672 - FLAM_C SINE Alu 0 133 1 4400 230 94 23 chr4 101898990 101899156 -82389506 - L1MB7 LINE L1 -1378 4806 4653 1827 130 46 7 chr4 101899156 101899441 -82389221 - AluSx SINE Alu -16 296 1 4400 230 94 23 chr4 101899441 101900321 -82388341 - L1MB7 LINE L1 -1531 4653 3494 3522 182 44 3 chr4 101900326 101901025 -82387637 - L1MC1 LINE L1 0 6831 6104 4913 255 158 24 chr4 101901027 101902879 -82385783 - L1MC1 LINE L1 -917 5727 4125 1717 178 0 7 chr4 101902879 101903172 -82385490 - AluJo SINE Alu -21 291 1 4913 255 158 24 chr4 101903172 101905609 -82383053 - L1MC1 LINE L1 -2519 4125 1035 851 166 0 0 chr4 101905611 101905750 -82382912 + FLAM_C SINE Alu 1 139 -4 3963 213 60 38 chr4 101905750 101906759 -82381903 - L1MC1 LINE L1 -5506 1036 5 373 254 69 15 chr4 101906760 101906890 -82381772 - L1MC5 LINE L1 -782 7179 7043 389 271 117 48 chr4 101906921 101907212 -82381450 - L1MC4a LINE L1 -1084 6724 6414 547 218 84 67 chr4 101907337 101907562 -82381100 + L1ME3A LINE L1 5720 5948 -222 757 171 0 0 chr4 101907573 101907690 -82380972 + FLAM_A SINE Alu 10 126 -16 475 219 151 39 chr4 101907703 101907908 -82380754 + L1ME3A LINE L1 5934 6161 -9 282 271 0 0 chr4 101908827 101908886 -82379776 - Tigger5 DNA MER2_type -1 2322 2264 222 311 0 40 chr4 101910948 101911022 -82377640 - L2 LINE L2 -11 3261 3191 2250 105 3 0 chr4 101911058 101911354 -82377308 + AluSp SINE Alu 2 298 -15 569 240 167 0 chr4 101911361 101911511 -82377151 + FRAM SINE Alu 1 172 -4 713 223 103 16 chr4 101913621 101913805 -82374857 + MER3 DNA MER1_type 9 208 -1 4796 256 120 18 chr4 101914135 101916273 -82372389 + L1ME1 LINE L1 28 2383 -4013 2851 214 90 55 chr4 101916316 101917149 -82371513 + L1ME1 LINE L1 3951 4832 -1383 1915 138 3 7 chr4 101917149 101917445 -82371217 + AluSx SINE Alu 3 297 -15 2851 214 90 55 chr4 101917445 101917693 -82370969 + L1ME1 LINE L1 4832 5070 -1145 468 271 177 0 chr4 101917686 101917867 -82370795 + L1ME1 LINE L1 5977 6189 -46 * 2699 90 11 0 chr4 101918239 101918593 -82370069 - THE1B LTR MaLR -6 358 1 225 0 0 0 chr4 101919038 101919063 -82369599 + (TA)n Simple_repeat Simple_repeat 2 26 0 804 252 9 23 chr4 101919373 101919591 -82369071 - MER58C DNA MER1_type 0 215 1 1062 100 158 37 chr4 101921289 101921479 -82367183 - L1PA11 LINE L1 -21 6153 5941 187 315 37 0 chr4 101921871 101921925 -82366737 - L2 LINE L2 -823 2491 2436 239 263 0 0 chr4 101923361 101923441 -82365221 + (CAG)n Simple_repeat Simple_repeat 3 82 0 21 0 0 0 chr4 102024975 102024996 -82263666 + AT_rich Low_complexity Low_complexity 1 21 0 425 278 43 9 chr4 102025117 102025232 -82263430 - MIR SINE MIR -93 169 51 867 101 17 0 chr4 102025281 102025400 -82263262 - AluSg/x SINE Alu -18 291 171 478 331 25 0 chr4 102025700 102025857 -82262805 + L2 LINE L2 2045 2205 -1109 1687 55 0 0 chr4 102025857 102026077 -82262585 - L1P LINE L1 -869 5277 5058 1715 263 69 16 chr4 102027230 102027910 -82260752 + L1M4 LINE L1 4490 5205 -941 23 0 0 0 chr4 102028393 102028416 -82260246 + AT_rich Low_complexity Low_complexity 1 23 0 302 223 7 159 chr4 102028796 102029097 -82259565 - MER112 DNA MER1_type 0 256 2 200 338 26 0 chr4 102030741 102030818 -82257844 + L2 LINE L2 2551 2629 -685 5086 124 13 66 chr4 102030848 102031132 -82257530 - L1MA2 LINE L1 0 6304 6007 1931 138 10 3 chr4 102031132 102031423 -82257239 - AluSx SINE Alu -19 293 1 5086 124 13 66 chr4 102031423 102032119 -82256543 - L1MA2 LINE L1 -297 6007 5376 10613 31 2 0 chr4 102032219 102033503 -82255159 + L1P LINE L1 1425 2710 -3436 3721 188 5 4 chr4 102033609 102034417 -82254245 - L1M1 LINE L1 -743 5403 4621 434 321 80 44 chr4 102034418 102034783 -82253879 + L2 LINE L2 2623 3001 -271 336 102 0 0 chr4 102034783 102034832 -82253830 + (TG)n Simple_repeat Simple_repeat 2 50 0 434 321 80 44 chr4 102034832 102034937 -82253725 + L2 LINE L2 3001 3101 -171 4370 158 17 5 chr4 102035051 102035808 -82252854 + HSMAR2 DNA Mariner 350 1115 -187 360 0 0 0 chr4 102036012 102036052 -82252610 + (TTA)n Simple_repeat Simple_repeat 3 42 0 3280 40 2 2 chr4 102036052 102036452 -82252210 - L1PA4 LINE L1 -18 6137 5738 1088 163 5 0 chr4 102036464 102036648 -82252014 + HSMAR2 DNA Mariner 1115 1299 -3 2072 75 61 31 chr4 102037646 102037940 -82250722 + AluY SINE Alu 1 303 -8 360 238 119 7 chr4 102038308 102038451 -82250211 - MIR SINE MIR 0 262 104 601 278 106 20 chr4 102038492 102038690 -82249972 - MIR SINE MIR -13 249 35 267 347 21 35 chr4 102038903 102039047 -82249615 + MIR SINE MIR 1 142 -120 368 316 124 10 chr4 102039086 102039279 -82249383 - MIR SINE MIR -3 259 45 1650 95 26 4 chr4 102039301 102039532 -82249130 + AluSq SINE Alu 1 236 -77 316 296 90 36 chr4 102039648 102039871 -82248791 + L1M4 LINE L1 4072 4306 -1840 2302 125 11 19 chr4 102039998 102040365 -82248297 + THE1B LTR MaLR 1 364 0 369 198 108 108 chr4 102040730 102040887 -82247775 - MLT1J2 LTR MaLR -12 438 282 347 247 0 21 chr4 102040973 102041066 -82247596 - MLT1J2 LTR MaLR -323 127 37 205 253 27 53 chr4 102041284 102041359 -82247303 + MIR SINE MIR 184 256 -6 180 0 0 0 chr4 102041890 102041910 -82246752 + (T)n Simple_repeat Simple_repeat 1 20 0 1831 178 66 31 chr4 102042080 102042482 -82246180 + L1MC1 LINE L1 5899 6316 -17 27017 64 5 16 chr4 102042821 102048843 -82239819 - L1PA5 LINE L1 0 6154 1 219 274 221 9 chr4 102049032 102049145 -82239517 - L3b LINE CR1 -171 1412 1276 345 329 89 0 chr4 102049484 102049630 -82239032 + MIR SINE MIR 75 233 -29 186 43 0 0 chr4 102049839 102049862 -82238800 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 734 167 24 0 chr4 102051799 102051925 -82236737 - FLAM_A SINE Alu -1 132 4 21 36 0 0 chr4 102052472 102052500 -82236162 + AT_rich Low_complexity Low_complexity 1 28 0 614 254 16 8 chr4 102052919 102053074 -82235588 - MIR SINE MIR -61 147 5 1369 128 92 0 chr4 102053857 102054075 -82234587 - AluJb SINE Alu -14 298 61 374 222 108 29 chr4 102054131 102054324 -82234338 - MLT1L LTR MaLR -341 274 1 205 235 20 0 chr4 102054455 102054506 -82234156 + (TA)n Simple_repeat Simple_repeat 2 53 0 218 293 50 40 chr4 102055434 102055533 -82233129 + MIR3 SINE MIR 95 194 -14 296 282 0 21 chr4 102055558 102055649 -82233013 - MER5A DNA MER1_type -16 165 76 41 78 0 0 chr4 102055781 102055871 -82232791 + AT_rich Low_complexity Low_complexity 1 90 0 2312 118 90 20 chr4 102056044 102056444 -82232218 - MSTA LTR MaLR 0 428 1 224 286 16 16 chr4 102056480 102056543 -82232119 + MER5A DNA MER1_type 102 164 -25 248 309 44 39 chr4 102056609 102056649 -82232013 - LTR33 LTR ERVL -6 515 477 1390 202 35 38 chr4 102056649 102057015 -82231647 - MLT1A1 LTR MaLR 0 365 1 248 309 44 39 chr4 102057015 102057155 -82231507 - LTR33 LTR ERVL -44 477 334 180 0 0 0 chr4 102059215 102059235 -82229427 + (A)n Simple_repeat Simple_repeat 1 20 0 235 307 54 32 chr4 102060001 102060281 -82228381 + L1M4 LINE L1 3404 3689 -2457 28 0 0 0 chr4 102060305 102060333 -82228329 + AT_rich Low_complexity Low_complexity 1 28 0 2377 44 0 0 chr4 102060424 102060696 -82227966 + AluY SINE Alu 21 292 -19 384 283 59 0 chr4 102060835 102061022 -82227640 + L1M4 LINE L1 4511 4708 -1438 200 118 29 0 chr4 102061402 102061436 -82227226 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 1778 167 15 0 chr4 102061437 102061706 -82226956 - AluJo SINE Alu -34 278 6 210 323 76 38 chr4 102061738 102061896 -82226766 + L3b LINE CR1 1345 1508 -75 225 0 0 0 chr4 102062757 102062782 -82225880 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 40655 50 4 1 chr4 102062782 102068887 -82219775 - L1PA4 LINE L1 -16 6139 11 307 207 0 0 chr4 102068995 102069053 -82219609 - L2 LINE L2 -2 3311 3254 245 336 28 9 chr4 102069135 102069242 -82219420 - L3b LINE CR1 -256 1327 1219 183 139 0 0 chr4 102069274 102069310 -82219352 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 500 242 97 16 chr4 102069350 102069474 -82219188 - L2 LINE L2 -18 3295 3162 28355 117 18 63 chr4 102070156 102072561 -82216101 + L1PA7 LINE L1 12 2525 -3629 2148 118 23 7 chr4 102072561 102072865 -82215797 + AluSc SINE Alu 1 309 0 28355 117 18 63 chr4 102072865 102076893 -82211769 + L1PA7 LINE L1 2525 6146 -8 281 297 47 40 chr4 102077481 102077629 -82211033 + L1ME2 LINE L1 5437 5585 -2223 1200 182 95 4 chr4 102077743 102077985 -82210677 + Tigger7 DNA MER2_type 4 267 -2220 471 200 0 11 chr4 102077984 102078074 -82210588 + Tigger7 DNA MER2_type 2493 2581 -6 * 626 358 58 0 chr4 102078291 102078601 -82210061 + MLT1I LTR MaLR 74 401 -8 545 229 61 108 chr4 102078608 102078839 -82209823 + MIR SINE MIR 38 257 -5 836 170 0 7 chr4 102078853 102078994 -82209668 + FLAM_C SINE Alu 1 140 -3 1776 145 57 7 chr4 102079143 102079425 -82209237 + AluJb SINE Alu 1 296 -16 2148 133 0 3 chr4 102080122 102080424 -82208238 - AluSx SINE Alu -11 301 1 1698 239 130 24 chr4 102080675 102081454 -82207208 + L1M4 LINE L1 4389 5249 -897 408 207 41 8 chr4 102081462 102081583 -82207079 + L1ME2 LINE L1 6038 6162 -2 2146 90 55 10 chr4 102082059 102082349 -82206313 + AluSq SINE Alu 1 303 -10 593 135 25 3 chr4 102082622 102082880 -82205782 - AluJb SINE Alu 0 331 2 2019 180 42 10 chr4 102085224 102085608 -82203054 + MSTD LTR MaLR 1 396 0 416 337 92 15 chr4 102086108 102086304 -82202358 + MIR SINE MIR 14 224 -38 1801 122 16 55 chr4 102087154 102087465 -82201197 - AluSx SINE Alu -13 299 1 2192 101 3 35 chr4 102087668 102087984 -82200678 - AluSg SINE Alu -4 306 1 290 167 17 0 chr4 102089299 102089359 -82199303 + T-rich Low_complexity Low_complexity 5 65 0 1901 154 3 20 chr4 102089370 102089662 -82199000 - AluSx SINE Alu -23 289 3 455 203 0 0 chr4 102090351 102090430 -82198232 + LTR40a LTR ERVL 3 81 -438 666 228 5 57 chr4 102090434 102090645 -82198017 + MER58C DNA MER1_type 5 204 -11 774 195 34 23 chr4 102090645 102090949 -82197713 + LTR40b LTR ERVL 68 459 -3 2285 177 134 14 chr4 102091437 102091935 -82196727 - MER74A LTR ERVL 0 558 1 5742 144 12 153 chr4 102092298 102092827 -82195835 + MER52A LTR ERV1 454 1056 -699 198 0 0 0 chr4 102092827 102092849 -82195813 + (AGATG)n Simple_repeat Simple_repeat 5 26 0 5742 144 12 153 chr4 102092849 102092974 -82195688 + MER52A LTR ERV1 1056 1197 -558 198 0 0 0 chr4 102092974 102092996 -82195666 + (AGATG)n Simple_repeat Simple_repeat 5 26 0 5742 144 12 153 chr4 102092996 102093855 -82194807 + MER52A LTR ERV1 1197 1755 0 665 241 153 0 chr4 102093880 102094096 -82194566 - MIR SINE MIR -11 251 3 350 302 44 57 chr4 102094841 102095000 -82193662 + MIR SINE MIR 56 212 -50 2338 75 7 0 chr4 102095540 102095834 -82192828 - AluSp SINE Alu -16 297 2 428 245 150 35 chr4 102096239 102096439 -82192223 - MIR SINE MIR -6 256 34 289 341 7 7 chr4 102096803 102096938 -82191724 + L1P LINE L1 4878 5012 -1134 1346 134 0 0 chr4 102097054 102097256 -82191406 - AluSq SINE Alu -3 310 109 388 250 79 0 chr4 102097333 102097485 -82191177 + L1ME4a LINE L1 5254 5417 -2391 400 284 108 14 chr4 102097607 102097755 -82190907 + MIR3 SINE MIR 32 193 -15 340 286 0 0 chr4 102098028 102098133 -82190529 - HAL1 LINE L1 -169 2338 2234 2590 280 99 61 chr4 102098286 102099273 -82189389 - HAL1 LINE L1 -538 1969 886 2765 86 6 0 chr4 102099273 102099635 -82189027 + THE1B LTR MaLR 1 364 0 2590 280 99 61 chr4 102099635 102100396 -82188266 - HAL1 LINE L1 -1621 886 155 27 0 0 0 chr4 102101103 102101130 -82187532 + AT_rich Low_complexity Low_complexity 1 27 0 235 200 22 0 chr4 102102217 102102262 -82186400 + L1ME4a LINE L1 5558 5603 -518 337 274 137 25 chr4 102102373 102102570 -82186092 + L1ME4a LINE L1 5903 6121 0 189 107 0 0 chr4 102102846 102102874 -82185788 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 2074 136 0 0 chr4 102103588 102103871 -82184791 + AluSx SINE Alu 1 286 -26 408 91 0 0 chr4 102103871 102103937 -82184725 + (CCAA)n Simple_repeat Simple_repeat 2 67 0 2074 136 0 0 chr4 102103937 102103954 -82184708 + AluSx SINE Alu 285 301 -11 384 231 55 122 chr4 102104040 102104295 -82184367 - L2 LINE L2 -230 3042 2805 229 279 25 13 chr4 102104335 102104414 -82184248 - L2 LINE L2 -643 2671 2592 195 42 0 0 chr4 102106170 102106194 -82182468 + (CATA)n Simple_repeat Simple_repeat 1 24 0 200 216 0 0 chr4 102107042 102107079 -82181583 + T-rich Low_complexity Low_complexity 4 40 0 27 49 0 0 chr4 102107124 102107165 -82181497 + AT_rich Low_complexity Low_complexity 1 41 0 298 291 8 17 chr4 102107283 102107400 -82181262 - L1ME4a LINE L1 -254 5867 5752 287 272 39 10 chr4 102107666 102107769 -82180893 - L1MC4 LINE L1 -17 8025 7920 199 301 11 97 chr4 102109496 102109589 -82179073 - L2 LINE L2 -31 3282 3198 331 367 73 32 chr4 102110394 102110655 -82178007 + L2 LINE L2 2720 2987 -285 180 231 0 0 chr4 102110996 102111035 -82177627 + L2 LINE L2 3230 3268 -4 403 296 26 74 chr4 102112012 102112242 -82176420 - MIR SINE MIR -24 238 20 525 294 28 0 chr4 102113765 102113908 -82174754 + MLT1G1 LTR MaLR 438 584 -11 2215 102 16 0 chr4 102114382 102114687 -82173975 - AluSx SINE Alu -2 310 1 552 328 193 17 chr4 102114997 102115354 -82173308 - L2 LINE L2 -1 3312 2893 1811 135 90 15 chr4 102115390 102115724 -82172938 - MER46B DNA MER2_type -2 234 1 555 310 97 9 chr4 102115773 102115989 -82172673 - MIR SINE MIR -16 246 12 742 190 7 0 chr4 102116518 102116660 -82172002 + FLAM_C SINE Alu 1 143 0 323 342 99 21 chr4 102116903 102117146 -82171516 + L2 LINE L2 2186 2447 -867 308 373 30 42 chr4 102117234 102117325 -82171337 + L2 LINE L2 2695 2786 -486 1601 36 0 0 chr4 102117325 102117520 -82171142 - L1PA3 LINE L1 -2 6153 5959 308 373 30 42 chr4 102117520 102117694 -82170968 + L2 LINE L2 2786 2966 -306 453 281 33 7 chr4 102117787 102117940 -82170722 - MER103 DNA DNA 0 166 10 21 0 0 0 chr4 102119004 102119025 -82169637 + AT_rich Low_complexity Low_complexity 1 21 0 982 246 149 21 chr4 102119313 102119642 -82169020 - L2 LINE L2 -5 3308 2938 4194 175 21 4 chr4 102119642 102120363 -82168299 - MER44D DNA MER2_type 0 605 1 323 340 11 0 chr4 102120383 102120477 -82168185 - L2 LINE L2 -465 2849 2755 896 289 31 4 chr4 102120499 102120727 -82167935 - L2 LINE L2 -668 2646 2413 909 264 163 0 chr4 102120743 102121020 -82167642 - L2 LINE L2 -1163 2151 1830 2315 260 49 45 chr4 102121020 102121910 -82166752 + L1MC4 LINE L1 7117 8010 -32 472 267 317 10 chr4 102121944 102122348 -82166314 - L2 LINE L2 -1480 1834 1307 203 397 0 0 chr4 102122418 102122491 -82166171 - MIR3 SINE MIR -23 185 113 234 330 32 48 chr4 102122581 102122769 -82165893 - MIR SINE MIR 0 262 78 534 163 144 65 chr4 102123870 102124019 -82164643 - MER20B DNA MER1_type -6 777 604 2397 96 30 8 chr4 102124019 102124384 -82164278 + L1PA11 LINE L1 5800 6172 -2 534 163 144 65 chr4 102124384 102124449 -82164213 - MER20B DNA MER1_type -179 604 546 24 32 0 0 chr4 102124752 102124783 -82163879 + AT_rich Low_complexity Low_complexity 1 31 0 591 255 91 6 chr4 102125176 102125442 -82163220 - L1ME3 LINE L1 -202 5968 5681 340 257 143 0 chr4 102125893 102125998 -82162664 + MIR SINE MIR 70 189 -73 418 246 156 6 chr4 102126627 102126806 -82161856 + HAL1b LINE L1 358 563 -785 200 193 261 57 chr4 102126859 102126947 -82161715 - MIR SINE MIR -31 231 126 304 302 29 29 chr4 102126993 102127132 -82161530 - MIR SINE MIR -110 152 14 3063 174 36 70 chr4 102127633 102128307 -82160355 - MER82 DNA MER2_type 0 653 3 2398 102 22 19 chr4 102128581 102128944 -82159718 + THE1B LTR MaLR 1 364 0 824 136 3 3 chr4 102129017 102129145 -82159517 - L1PA15 LINE L1 -144 6021 5895 14201 130 37 14 chr4 102129145 102131031 -82157631 + Tigger1 DNA MER2_type 31 1983 -435 1544 112 31 5 chr4 102131031 102131255 -82157407 + AluSg/x SINE Alu 81 310 0 14201 130 37 14 chr4 102131255 102131699 -82156963 + Tigger1 DNA MER2_type 1983 2415 -3 417 39 0 0 chr4 102131920 102131971 -82156691 + (CA)n Simple_repeat Simple_repeat 2 52 0 385 240 31 0 chr4 102132110 102132206 -82156456 - MER69 DNA AcHobo -885 341 243 356 285 41 24 chr4 102132211 102132334 -82156328 - Charlie8 DNA MER1_type -2291 126 2 2394 115 5 40 chr4 102132609 102132984 -82155678 + THE1B LTR MaLR 3 364 0 257 243 14 40 chr4 102133341 102133415 -82155247 - Charlie8 DNA MER1_type -2195 222 151 300 295 0 36 chr4 102133673 102133785 -82154877 + L1M4 LINE L1 2932 3039 -3107 2124 99 7 7 chr4 102133852 102134123 -82154539 + AluSx SINE Alu 11 284 -28 618 14 0 0 chr4 102134123 102134194 -82154468 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 2124 99 7 7 chr4 102134194 102134224 -82154438 + AluSx SINE Alu 283 312 0 2160 156 19 27 chr4 102134422 102134833 -82153829 - L1MC1 LINE L1 -7 6326 5919 384 163 44 59 chr4 102135519 102135654 -82153008 - L1MC5 LINE L1 -185 7776 7644 303 211 14 14 chr4 102136271 102136342 -82152320 - L3 LINE CR1 -19 1558 1488 2094 233 60 2 chr4 102136704 102137202 -82151460 + MER119 DNA MER1_type 57 583 0 582 327 126 7 chr4 102137236 102137505 -82151157 - L2 LINE L2 0 3313 3013 2673 36 0 0 chr4 102137601 102137906 -82150756 - AluY SINE Alu -6 305 1 1486 164 75 21 chr4 102138360 102138641 -82150021 - AluJo SINE Alu -16 296 1 432 272 47 65 chr4 102139118 102139206 -82149456 + MIR3 SINE MIR 31 116 -92 1658 251 66 33 chr4 102139206 102139780 -82148882 + MLT1E LTR MaLR 1 593 0 432 272 47 65 chr4 102139780 102139860 -82148802 + MIR3 SINE MIR 116 196 -12 487 268 37 16 chr4 102140353 102140543 -82148119 + L1MEc LINE L1 2023 2216 -4180 313 318 179 3 chr4 102140587 102140756 -82147906 + MIR3 SINE MIR 1 202 -6 392 295 29 29 chr4 102141487 102141626 -82147036 + MER5A DNA MER1_type 12 150 -39 237 331 66 13 chr4 102141514 102141665 -82146997 - MER5A DNA MER1_type -26 163 5 * 659 278 51 6 chr4 102141660 102141836 -82146826 + MER5A DNA MER1_type 6 189 0 295 97 97 65 chr4 102141844 102141906 -82146756 - Charlie7 DNA MER1_type 0 2612 2549 2081 210 45 4 chr4 102141972 102142469 -82146193 - L1M4 LINE L1 -472 5702 5157 1850 137 0 34 chr4 102142469 102142790 -82145872 - AluSx SINE Alu -2 310 1 2081 210 45 4 chr4 102142790 102142999 -82145663 - L1M4 LINE L1 -1017 5157 4958 1698 222 64 99 chr4 102142999 102143775 -82144887 - L1M4 LINE L1 -1734 4412 3664 * 3861 218 130 38 chr4 102143770 102144453 -82144209 + L1MC4 LINE L1 6383 7002 -1040 1862 178 47 23 chr4 102144453 102144840 -82143822 + MSTD LTR MaLR 1 396 0 3861 218 130 38 chr4 102144840 102145586 -82143076 + L1MC4 LINE L1 7002 8042 0 1365 143 15 0 chr4 102146221 102146424 -82142238 + AluSg/x SINE Alu 87 292 -20 199 0 0 0 chr4 102146502 102146524 -82142138 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 1835 151 22 0 chr4 102146524 102146802 -82141860 - AluJo SINE Alu -28 284 1 24 67 0 0 chr4 102147276 102147321 -82141341 + AT_rich Low_complexity Low_complexity 1 45 0 1535 169 10 36 chr4 102147472 102147773 -82140889 + AluJo SINE Alu 11 303 -9 269 310 171 0 chr4 102147904 102148033 -82140629 - MIR SINE MIR -35 227 77 22 0 0 0 chr4 102148286 102148308 -82140354 + AT_rich Low_complexity Low_complexity 1 22 0 2524 186 57 39 chr4 102149629 102150247 -82138415 + L1MC4 LINE L1 7414 8042 0 36 0 0 0 chr4 102151130 102151166 -82137496 + AT_rich Low_complexity Low_complexity 1 36 0 670 323 58 9 chr4 102151173 102151399 -82137263 - MIR SINE MIR -13 249 13 203 372 58 0 chr4 102152105 102152191 -82136471 - MIR3 SINE MIR -15 193 103 31179 109 13 54 chr4 102152226 102158645 -82130017 + L1PA7 LINE L1 12 6154 0 1628 191 7 16 chr4 102158959 102159263 -82129399 + AluJo SINE Alu 1 301 -11 195 204 0 0 chr4 102159428 102159472 -82129190 - L2 LINE L2 -349 2964 2921 387 60 0 0 chr4 102159743 102159793 -82128869 + (TG)n Simple_repeat Simple_repeat 2 51 0 22 99 0 0 chr4 102159797 102159868 -82128794 + AT_rich Low_complexity Low_complexity 1 71 0 181 286 20 0 chr4 102160525 102160574 -82128088 + MIR3 SINE MIR 138 187 -21 2218 55 28 10 chr4 102160688 102160979 -82127683 + AluY SINE Alu 1 296 -15 2076 144 9 66 chr4 102161626 102162050 -82126612 + MER57A LTR ERV1 3 402 -1 225 0 0 0 chr4 102162105 102162130 -82126532 + (A)n Simple_repeat Simple_repeat 1 25 0 1460 253 111 11 chr4 102162508 102162978 -82125684 + LTR33A LTR ERVL 5 521 -2 2521 114 5 13 chr4 102163006 102163384 -82125278 - THE1C LTR MaLR 0 375 1 269 194 46 176 chr4 102163760 102164044 -82124618 - MER112 DNA MER1_type -10 250 4 1643 217 47 6 chr4 102164232 102164591 -82124071 + MLT1B LTR MaLR 1 374 -16 619 281 104 13 chr4 102165445 102165676 -82122986 + MIR SINE MIR 1 252 -10 21 36 0 0 chr4 102167481 102167509 -82121153 + AT_rich Low_complexity Low_complexity 1 28 0 2140 134 0 0 chr4 102167722 102168021 -82120641 + AluSx SINE Alu 9 307 -5 21 36 0 0 chr4 102168158 102168186 -82120476 + AT_rich Low_complexity Low_complexity 1 28 0 198 118 0 0 chr4 102168831 102168865 -82119797 + (T)n Simple_repeat Simple_repeat 1 34 0 25 0 0 0 chr4 102169269 102169294 -82119368 + AT_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr4 102169686 102169707 -82118955 + (TAA)n Simple_repeat Simple_repeat 1 21 0 348 286 98 31 chr4 102170089 102170313 -82118349 + L1ME LINE L1 5386 5624 -497 2306 146 77 17 chr4 102170332 102170736 -82117926 - MSTA LTR MaLR 0 428 1 246 358 49 12 chr4 102170738 102170900 -82117762 + L1ME LINE L1 5655 5822 -299 21 36 0 0 chr4 102171980 102172008 -82116654 + AT_rich Low_complexity Low_complexity 1 28 0 200 250 0 0 chr4 102172218 102172262 -82116400 + MIR3 SINE MIR 156 199 -9 257 221 0 0 chr4 102172416 102172484 -82116178 - L1MC4 LINE L1 -1339 6703 6636 312 27 0 0 chr4 102172490 102172527 -82116135 + (TG)n Simple_repeat Simple_repeat 1 37 0 1909 247 85 26 chr4 102172531 102173070 -82115592 + MER21B LTR ERV1 25 595 -268 808 189 67 9 chr4 102173344 102173558 -82115104 + MER21B LTR ERV1 593 862 -1 245 250 31 0 chr4 102173569 102173633 -82115029 + LTR33 LTR ERVL 142 207 -314 269 153 0 17 chr4 102173656 102173715 -82114947 + CT-rich Low_complexity Low_complexity 4 61 0 225 175 0 0 chr4 102173736 102173776 -82114886 + CT-rich Low_complexity Low_complexity 3 42 0 1517 146 17 96 chr4 102173776 102174078 -82114584 - AluJb SINE Alu -32 280 3 1761 139 52 0 chr4 102175283 102175571 -82113091 + MER2 DNA MER2_type 1 303 -42 3918 221 92 32 chr4 102177739 102178533 -82110129 - L1MD2 LINE L1 -10 6349 5604 2478 63 13 0 chr4 102178533 102178836 -82109826 - AluSp SINE Alu -6 307 1 3918 221 92 32 chr4 102178836 102179722 -82108940 - L1MD2 LINE L1 -755 5604 4557 25 90 0 0 chr4 102179754 102179821 -82108841 + AT_rich Low_complexity Low_complexity 1 67 0 204 40 0 0 chr4 102180681 102180706 -82107956 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2083 147 0 0 chr4 102180745 102181045 -82107617 - AluSx SINE Alu -12 300 1 741 235 41 0 chr4 102181543 102181713 -82106949 + MER5A DNA MER1_type 7 183 -6 2125 132 86 3 chr4 102182632 102182980 -82105682 + Tigger2 DNA MER2_type 2342 2718 0 3887 220 158 40 chr4 102183755 102185059 -82103603 + L1MC4 LINE L1 6347 7826 -216 2339 75 13 7 chr4 102185059 102185367 -82103295 + AluY SINE Alu 1 310 -1 3887 220 158 40 chr4 102185367 102185451 -82103211 + L1MC4 LINE L1 7826 7899 -143 191 281 70 0 chr4 102185467 102185524 -82103138 - L3b LINE CR1 -340 1243 1183 236 371 0 0 chr4 102185657 102185719 -82102943 - L2 LINE L2 -96 3176 3115 2396 78 0 3 chr4 102185768 102186075 -82102587 + AluY SINE Alu 1 306 -5 1304 179 0 5 chr4 102186086 102186310 -82102352 + AluJo SINE Alu 85 307 -5 558 300 80 0 chr4 102186391 102186591 -82102071 - MIR SINE MIR -16 246 31 22 35 0 0 chr4 102187710 102187739 -82100923 + AT_rich Low_complexity Low_complexity 1 29 0 612 300 58 66 chr4 102187989 102188399 -82100263 + L1MEd LINE L1 44 450 -5669 3025 230 46 79 chr4 102188457 102189463 -82099199 + L1MA5 LINE L1 45 962 -6206 6641 147 51 27 chr4 102189464 102190813 -82097849 + L1MA5 LINE L1 4478 5858 -1309 2287 166 44 10 chr4 102190814 102191224 -82097438 - MSTB1 LTR MaLR 0 432 9 2082 196 46 4 chr4 102191231 102191689 -82096973 + L1MA5 LINE L1 5854 6330 -837 4882 141 45 11 chr4 102191690 102192551 -82096111 + L1MA5 LINE L1 6426 7316 -5 21 36 0 0 chr4 102192556 102192584 -82096078 + AT_rich Low_complexity Low_complexity 1 28 0 736 283 76 23 chr4 102192584 102192980 -82095682 + L1MEd LINE L1 534 950 -5169 33084 54 16 1 chr4 102193187 102199274 -82089388 + L1PA5 LINE L1 2 6154 0 304 286 17 0 chr4 102199386 102199505 -82089157 + L1MEd LINE L1 940 1060 -5059 22 0 0 0 chr4 102199750 102199772 -82088890 + AT_rich Low_complexity Low_complexity 1 22 0 201 154 0 0 chr4 102200302 102200341 -82088321 + (TA)n Simple_repeat Simple_repeat 2 40 0 272 263 79 44 chr4 102200570 102200672 -82087990 + L2 LINE L2 2826 2934 -338 562 174 19 45 chr4 102200672 102200827 -82087835 - L1MB7 LINE L1 0 6184 6034 272 263 79 44 chr4 102200827 102200838 -82087824 + L2 LINE L2 2934 2943 -329 313 111 0 0 chr4 102201300 102201345 -82087317 - Alu SINE Alu -5 297 253 1944 165 0 3 chr4 102201461 102201764 -82086898 - AluSx SINE Alu -10 302 1 21 71 0 0 chr4 102202436 102202478 -82086184 + AT_rich Low_complexity Low_complexity 1 42 0 3079 215 53 13 chr4 102202482 102203272 -82085390 - L1ME1 LINE L1 -7 6159 5338 2786 126 70 10 chr4 102203314 102203800 -82084862 + L1MC/D LINE L1 5285 5799 -545 191 304 101 13 chr4 102205019 102205098 -82083564 + L2 LINE L2 3169 3254 -18 321 188 271 0 chr4 102205148 102205244 -82083418 - MER112 DNA MER1_type -5 255 134 33 73 0 0 chr4 102205255 102205323 -82083339 + AT_rich Low_complexity Low_complexity 1 68 0 1910 151 35 18 chr4 102205343 102205681 -82082981 + MER2 DNA MER2_type 1 344 0 189 74 0 0 chr4 102206805 102206832 -82081830 + (TG)n Simple_repeat Simple_repeat 2 28 0 1845 99 4 8 chr4 102207778 102208031 -82080631 + AluSg SINE Alu 49 300 -10 207 186 0 0 chr4 102208783 102208826 -82079836 + (TG)n Simple_repeat Simple_repeat 2 44 0 767 279 42 9 chr4 102209211 102209426 -82079236 - MIR SINE MIR 0 262 41 2360 160 44 12 chr4 102210404 102210817 -82077845 - MSTB LTR MaLR 0 426 1 23 0 0 0 chr4 102211913 102211936 -82076726 + AT_rich Low_complexity Low_complexity 1 23 0 350 216 78 43 chr4 102211943 102212059 -82076603 + L2 LINE L2 2310 2429 -885 817 250 146 54 chr4 102212080 102212245 -82076417 + L2 LINE L2 2737 2885 -428 1831 176 9 20 chr4 102212245 102212586 -82076076 - MER1B DNA MER1_type 0 337 1 817 250 146 54 chr4 102212586 102212888 -82075774 + L2 LINE L2 2885 3246 -67 33 0 0 0 chr4 102214399 102214432 -82074230 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chr4 102215147 102215180 -82073482 + AT_rich Low_complexity Low_complexity 1 33 0 241 228 228 10 chr4 102215322 102215423 -82073239 - MIR SINE MIR -14 248 126 1696 251 187 21 chr4 102215660 102215784 -82072878 + L2 LINE L2 2057 2159 -1154 627 246 95 4 chr4 102215784 102216016 -82072646 + MER112 DNA MER1_type 4 256 0 1696 251 187 21 chr4 102216016 102216833 -82071829 + L2 LINE L2 2159 3155 -158 426 299 99 50 chr4 102217209 102217410 -82071252 + MIR SINE MIR 5 215 -47 180 0 0 0 chr4 102217904 102217924 -82070738 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr4 102218398 102218419 -82070243 + AT_rich Low_complexity Low_complexity 1 21 0 1803 104 61 30 chr4 102218473 102218770 -82069892 + AluSx SINE Alu 1 306 -6 435 215 168 0 chr4 102221201 102221308 -82067354 - L2 LINE L2 -1 3312 3188 735 362 107 22 chr4 102221969 102222465 -82066197 - L2 LINE L2 -517 2797 2214 1630 134 57 28 chr4 102222465 102222748 -82065914 + AluJo SINE Alu 13 303 -9 735 362 107 22 chr4 102222748 102223008 -82065654 - L2 LINE L2 -1100 2214 1977 413 333 31 8 chr4 102223012 102223141 -82065521 - L2 LINE L2 -4 3268 3137 341 221 0 0 chr4 102223385 102223453 -82065209 - MIR SINE MIR -1 261 194 2933 122 70 5 chr4 102223467 102223910 -82064752 - MER1A DNA MER1_type 0 529 58 449 338 155 47 chr4 102224012 102224461 -82064201 - L2 LINE L2 -634 2680 2281 799 246 51 6 chr4 102224461 102224636 -82064026 - MER5A DNA MER1_type 0 189 7 449 338 155 47 chr4 102224636 102225526 -82063136 - L2 LINE L2 -1033 2281 1003 27 61 0 15 chr4 102226533 102226567 -82062095 + AT_rich Low_complexity Low_complexity 1 35 -30 2573 48 0 3 chr4 102226567 102226876 -82061786 + AluY SINE Alu 1 308 -3 27 61 0 15 chr4 102226876 102226907 -82061755 + AT_rich Low_complexity Low_complexity 35 65 0 21 0 0 0 chr4 102227534 102227555 -82061107 + AT_rich Low_complexity Low_complexity 1 21 0 333 0 0 0 chr4 102228257 102228294 -82060368 + (TG)n Simple_repeat Simple_repeat 2 38 0 430 254 109 7 chr4 102229720 102229858 -82058804 - MIR SINE MIR -1 261 110 320 303 56 42 chr4 102229870 102230012 -82058650 + MIR SINE MIR 119 262 0 304 125 0 71 chr4 102230671 102230727 -82057935 - MER5A DNA MER1_type 0 189 138 1124 184 75 15 chr4 102230741 102230925 -82057737 + MER63C DNA MER1_type 253 459 -601 1826 184 0 0 chr4 102230925 102231230 -82057432 - AluJb SINE Alu -4 308 4 1124 184 75 15 chr4 102231230 102231298 -82057364 + MER63C DNA MER1_type 459 521 -409 752 235 54 0 chr4 102231298 102231464 -82057198 - MER58B DNA MER1_type 0 341 167 3030 191 39 25 chr4 102231837 102232608 -82056054 + L1ME1 LINE L1 5188 5972 -194 761 166 0 55 chr4 102232731 102232850 -82055812 + L1MA10 LINE L1 6176 6285 -49 1898 132 10 16 chr4 102232850 102233153 -82055509 + AluSx SINE Alu 1 301 -11 761 166 0 55 chr4 102233153 102233196 -82055466 + L1MA10 LINE L1 6285 6329 -5 1659 151 7 21 chr4 102233806 102234085 -82054577 + AluJb SINE Alu 35 309 -3 1873 145 0 17 chr4 102234370 102234667 -82053995 + AluSx SINE Alu 1 292 -20 519 258 122 87 chr4 102234667 102235128 -82053534 - L1ME2 LINE L1 -236 5928 5451 249 302 117 45 chr4 102236069 102236248 -82052414 - L2 LINE L2 0 3313 3122 2221 128 0 0 chr4 102236494 102236799 -82051863 - AluSx SINE Alu -7 305 1 24 0 0 0 chr4 102238063 102238087 -82050575 + AT_rich Low_complexity Low_complexity 1 24 0 2008 143 0 10 chr4 102239080 102239380 -82049282 - AluJb SINE Alu -15 297 1 461 290 65 53 chr4 102240832 102241022 -82047640 - MIR SINE MIR 0 262 67 2256 95 0 28 chr4 102241022 102241339 -82047323 - AluSq SINE Alu -5 308 1 461 290 65 53 chr4 102241339 102241393 -82047269 - MIR SINE MIR -195 67 15 1965 113 0 80 chr4 102242612 102242938 -82045724 + AluSq SINE Alu 1 300 -13 22 0 0 0 chr4 102243320 102243342 -82045320 + AT_rich Low_complexity Low_complexity 1 22 0 21 89 0 0 chr4 102243778 102243834 -82044828 + AT_rich Low_complexity Low_complexity 1 56 0 500 321 62 21 chr4 102245232 102245572 -82043090 - MARNA DNA Mariner -200 386 33 731 103 103 0 chr4 102247224 102247350 -82041312 + MER85 DNA T2_type 1 139 0 463 230 22 37 chr4 102247355 102247490 -82041172 - LTR40a LTR ERVL -1 518 386 344 219 225 50 chr4 102248483 102248643 -82040019 + L2 LINE L2 3126 3313 0 182 333 0 0 chr4 102248808 102248859 -82039803 + MIR SINE MIR 23 73 -135 204 135 0 0 chr4 102250168 102250205 -82038457 + (A)n Simple_repeat Simple_repeat 1 37 0 390 156 16 0 chr4 102250206 102250270 -82038392 - MER4B LTR ERV1 -545 65 1 581 243 221 17 chr4 102250270 102250451 -82038211 + MIR SINE MIR 44 261 -1 236 265 31 10 chr4 102250563 102250661 -82038001 + (TA)n Simple_repeat Simple_repeat 2 101 0 385 275 87 106 chr4 102251413 102251737 -82036925 + L1ME4a LINE L1 5498 5814 -307 2394 68 0 3 chr4 102251737 102252044 -82036618 + AluSg SINE Alu 1 306 -4 385 275 87 106 chr4 102252044 102252144 -82036518 + L1ME4a LINE L1 5814 5914 -207 31 0 0 0 chr4 102252244 102252275 -82036387 + AT_rich Low_complexity Low_complexity 1 31 0 194 333 0 0 chr4 102252488 102252545 -82036117 - L2 LINE L2 0 3313 3257 1872 185 28 3 chr4 102253009 102253365 -82035297 + MLT1A1 LTR MaLR 1 365 0 23 0 0 0 chr4 102254033 102254056 -82034606 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr4 102254203 102254239 -82034423 + AT_rich Low_complexity Low_complexity 1 36 0 194 331 36 72 chr4 102254735 102254901 -82033761 - L3 LINE CR1 -575 1002 843 240 35 0 0 chr4 102255206 102255235 -82033427 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 281 118 20 0 chr4 102255262 102255313 -82033349 + CT-rich Low_complexity Low_complexity 1 52 0 2436 194 34 76 chr4 102255737 102256418 -82032244 + MLT1E1 LTR MaLR 3 654 0 3699 198 27 42 chr4 102258416 102259406 -82029256 + L1MB7 LINE L1 5213 6184 0 442 296 71 37 chr4 102259470 102259794 -82028868 + L1MC4a LINE L1 5548 5882 -1926 189 74 0 0 chr4 102259923 102259950 -82028712 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1596 179 11 4 chr4 102259955 102260234 -82028428 - AluJb SINE Alu -31 281 1 491 0 17 0 chr4 102260274 102260333 -82028329 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 31 0 0 0 chr4 102260356 102260387 -82028275 + AT_rich Low_complexity Low_complexity 1 31 0 1727 92 0 18 chr4 102260591 102260820 -82027842 + AluSg/x SINE Alu 80 304 -6 205 333 92 17 chr4 102262262 102262382 -82026280 + MIR3 SINE MIR 37 165 -43 499 226 14 104 chr4 102262396 102262608 -82026054 - L2 LINE L2 -6 3307 3115 243 271 131 0 chr4 102262971 102263078 -82025584 + HAL1 LINE L1 37 157 -2350 228 229 114 14 chr4 102263177 102263247 -82025415 + MLT1F1 LTR MaLR 1 77 -490 1013 247 5 0 chr4 102263260 102263479 -82025183 + AluJo SINE Alu 1 220 -92 21 0 0 0 chr4 102263502 102263523 -82025139 + AT_rich Low_complexity Low_complexity 1 21 0 1876 100 0 15 chr4 102263523 102263783 -82024879 - AluSc SINE Alu -53 256 1 31 26 0 0 chr4 102263789 102263827 -82024835 + AT_rich Low_complexity Low_complexity 1 38 0 959 162 0 13 chr4 102263827 102264005 -82024657 + AluJb SINE Alu 130 305 0 643 334 111 31 chr4 102264009 102264398 -82024264 + LTR33 LTR ERVL 102 521 0 1025 244 52 41 chr4 102264406 102264771 -82023891 + HAL1 LINE L1 2139 2507 0 2930 140 44 50 chr4 102264791 102264998 -82023664 + L1MB2 LINE L1 5587 5794 -377 2150 131 0 3 chr4 102264998 102265310 -82023352 - AluSp SINE Alu -2 311 1 2930 140 44 50 chr4 102265310 102265688 -82022974 + L1MB2 LINE L1 5794 6169 -2 193 302 161 40 chr4 102265689 102265838 -82022824 - MIR3 SINE MIR -39 169 3 560 157 26 17 chr4 102265853 102265968 -82022694 + L1MD2 LINE L1 6234 6349 -10 1087 272 103 10 chr4 102266345 102267391 -82021271 + L1ME3 LINE L1 4901 6156 -6 1938 223 68 11 chr4 102267406 102267474 -82021188 + L1MC4 LINE L1 5402 4995 -1185 393 22 0 0 chr4 102267474 102267520 -82021142 + (TAA)n Simple_repeat Simple_repeat 3 48 0 1938 223 68 11 chr4 102267520 102268026 -82020636 + L1MC4 LINE L1 4994 5469 -711 * 3440 177 33 11 chr4 102267521 102268181 -82020481 + L1MB8 LINE L1 5504 6178 0 556 235 174 49 chr4 102268180 102268255 -82020407 + L1MC4a LINE L1 5755 5819 -1989 * 2206 104 0 26 chr4 102268255 102268563 -82020099 + AluSp SINE Alu 1 300 -13 556 235 174 49 chr4 102268563 102268832 -82019830 + L1MC4a LINE L1 5819 6142 -1666 21 0 0 0 chr4 102269066 102269087 -82019575 + AT_rich Low_complexity Low_complexity 1 21 0 351 0 0 0 chr4 102269106 102269145 -82019517 + (CA)n Simple_repeat Simple_repeat 2 40 0 24 0 0 0 chr4 102270567 102270591 -82018071 + AT_rich Low_complexity Low_complexity 1 24 0 1348 170 38 4 chr4 102270591 102270826 -82017836 - AluJo SINE Alu -26 286 44 461 88 35 44 chr4 102271918 102272032 -82016630 + (TCTA)n Simple_repeat Simple_repeat 3 115 0 363 253 86 54 chr4 102272131 102272315 -82016347 + MER20B DNA MER1_type 13 204 -15 1520 149 8 12 chr4 102272699 102272948 -82015714 + AluJb SINE Alu 61 308 -4 22 35 0 0 chr4 102273101 102273130 -82015532 + AT_rich Low_complexity Low_complexity 1 29 0 234 258 76 0 chr4 102274297 102274363 -82014299 + MER20B DNA MER1_type 1 71 -712 2056 104 0 0 chr4 102275394 102275674 -82012988 + AluSg SINE Alu 21 300 -10 284 353 17 0 chr4 102276410 102276526 -82012136 + L2 LINE L2 2934 3051 -221 443 254 65 7 chr4 102276661 102276799 -82011863 - MIR SINE MIR 0 262 117 445 255 87 31 chr4 102276808 102276969 -82011693 + MLT1J LTR MaLR 1 170 -341 852 179 0 48 chr4 102277175 102277343 -82011319 + FRAM SINE Alu 1 160 -6 231 316 184 0 chr4 102277435 102277511 -82011151 - MIR SINE MIR -149 113 24 * 251 277 36 24 chr4 102277510 102277593 -82011069 + L2 LINE L2 3189 3272 0 1935 233 33 23 chr4 102278313 102278798 -82009864 - MER74B LTR ERVL -77 545 56 545 278 98 33 chr4 102278907 102279152 -82009510 - MIR SINE MIR 0 262 2 270 283 186 18 chr4 102279556 102279669 -82008993 - MER5A DNA MER1_type -23 166 35 * 337 298 19 39 chr4 102279588 102279692 -82008970 + MER5A DNA MER1_type 88 189 0 471 35 0 0 chr4 102280122 102280179 -82008483 + (GA)n Simple_repeat Simple_repeat 2 58 0 2355 100 0 0 chr4 102280806 102281116 -82007546 + AluSg SINE Alu 1 310 0 230 286 77 11 chr4 102281138 102281229 -82007433 + MIR SINE MIR 39 135 -73 636 304 114 20 chr4 102281234 102281661 -82007001 + L1ME4a LINE L1 5441 5905 -216 201 213 0 0 chr4 102281688 102281735 -82006927 + GA-rich Low_complexity Low_complexity 2 48 0 431 299 115 40 chr4 102282078 102282599 -82006063 - L1ME3A LINE L1 -223 5947 5388 1915 129 37 3 chr4 102284826 102285121 -82003541 + AluJb SINE Alu 1 305 -7 254 200 80 0 chr4 102285124 102285174 -82003488 - MIR3 SINE MIR -29 179 126 183 233 0 0 chr4 102285348 102285391 -82003271 + L2 LINE L2 3265 3307 -6 340 323 0 0 chr4 102285659 102285758 -82002904 + GA-rich Low_complexity Low_complexity 2 100 0 408 211 299 41 chr4 102286271 102286418 -82002244 - HAL1 LINE L1 -659 1848 1664 23 33 0 0 chr4 102287213 102287243 -82001419 + AT_rich Low_complexity Low_complexity 1 30 0 282 228 125 0 chr4 102287445 102287581 -82001081 + MER113 DNA MER1_type? 92 244 -277 239 256 0 39 chr4 102287691 102287769 -82000893 + HAL1 LINE L1 292 366 -2141 2639 261 106 58 chr4 102287782 102289118 -81999544 + HAL1 LINE L1 1104 2502 -5 582 300 103 42 chr4 102289143 102290250 -81998412 + L1ME4a LINE L1 4672 5871 -250 213 39 0 0 chr4 102291564 102291590 -81997072 + (GAAAA)n Simple_repeat Simple_repeat 2 27 0 25 31 0 0 chr4 102292533 102292565 -81996097 + AT_rich Low_complexity Low_complexity 1 32 0 370 286 71 50 chr4 102294787 102294969 -81993693 - MER5A DNA MER1_type -3 186 1 24 0 0 0 chr4 102295233 102295257 -81993405 + AT_rich Low_complexity Low_complexity 1 24 0 277 347 53 0 chr4 102296616 102296711 -81991951 + L2 LINE L2 3158 3257 -15 27 0 0 0 chr4 102296800 102296827 -81991835 + AT_rich Low_complexity Low_complexity 1 27 0 240 216 23 11 chr4 102298248 102298336 -81990326 + T-rich Low_complexity Low_complexity 2 90 0 2212 96 17 3 chr4 102298452 102298744 -81989918 + AluSg SINE Alu 1 296 -14 279 366 147 0 chr4 102298753 102298944 -81989718 + MIR SINE MIR 32 250 -12 314 156 0 16 chr4 102299861 102299925 -81988737 - L1PB3 LINE L1 -7 6147 6085 252 313 157 0 chr4 102299941 102300075 -81988587 + MIR SINE MIR 97 251 -11 243 103 0 0 chr4 102300258 102300297 -81988365 + (TG)n Simple_repeat Simple_repeat 2 40 0 285 332 48 58 chr4 102302036 102302452 -81986210 - L2 LINE L2 -366 2948 2537 * 1014 204 83 4 chr4 102302410 102302640 -81986022 + MIR SINE MIR 11 258 -4 583 364 48 12 chr4 102302765 102303100 -81985562 - L2 LINE L2 -919 2395 2049 732 301 45 48 chr4 102303231 102303650 -81985012 + MLT1J LTR MaLR 86 503 -8 505 162 180 9 chr4 102305776 102305887 -81982775 - L2 LINE L2 -1 3312 3183 204 205 0 0 chr4 102306082 102306121 -81982541 + (TG)n Simple_repeat Simple_repeat 1 39 0 360 282 127 32 chr4 102306242 102306462 -81982200 + MLT1J LTR MaLR 266 506 -5 260 326 35 12 chr4 102306464 102306550 -81982112 - MIR SINE MIR -155 107 20 904 267 109 82 chr4 102307693 102308228 -81980434 - MLT1H1 LTR MaLR -6 549 5 626 321 37 16 chr4 102308507 102308753 -81979909 - MIR SINE MIR -4 258 8 243 359 104 27 chr4 102309234 102309454 -81979208 + L2 LINE L2 2855 3091 -222 410 269 68 42 chr4 102309457 102309717 -81978945 - MLT1H LTR MaLR 0 549 286 395 159 11 80 chr4 102309759 102309847 -81978815 - MLT1H LTR MaLR -374 175 94 22 0 0 0 chr4 102309876 102309898 -81978764 + AT_rich Low_complexity Low_complexity 1 22 0 598 184 28 14 chr4 102309990 102310131 -81978531 - L1MD3 LINE L1 -10 7985 7843 * 1030 207 131 20 chr4 102310126 102310343 -81978319 - L1MC4a LINE L1 -509 7299 7108 2158 98 51 0 chr4 102310343 102310638 -81978024 - AluSg SINE Alu 0 310 1 1030 207 131 20 chr4 102310638 102310778 -81977884 - L1MC4a LINE L1 -700 7108 6902 1539 216 121 18 chr4 102310781 102311337 -81977325 + MER114 LTR ERV 36 648 0 2068 113 128 28 chr4 102312336 102312725 -81975937 + MSTA LTR MaLR 1 428 0 25 0 0 0 chr4 102313344 102313369 -81975293 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr4 102317419 102317444 -81971218 + AT_rich Low_complexity Low_complexity 1 25 0 3929 85 0 9 chr4 102318644 102319183 -81969479 - L1PA8A LINE L1 -1 6130 5597 1606 171 3 0 chr4 102319291 102319577 -81969085 - L1 LINE L1 -1408 4738 4452 * 3261 146 39 4 chr4 102319575 102320158 -81968504 + L1 LINE L1 4728 5332 -829 1067 44 0 0 chr4 102320158 102320294 -81968368 + L1PA12 LINE L1 6032 6168 0 3261 146 39 4 chr4 102320294 102320309 -81968353 + L1 LINE L1 5332 5345 -816 633 42 10 21 chr4 102320308 102320404 -81968258 + L1MA4 LINE L1 6088 6182 -118 * 726 131 0 15 chr4 102320433 102320570 -81968092 + L1MA4 LINE L1 6165 6299 -1 1773 118 34 3 chr4 102320580 102320877 -81967785 + L1M2 LINE L1 5299 5604 -687 856 193 51 28 chr4 102320877 102321053 -81967609 + MLT1A1 LTR MaLR 186 365 0 474 279 216 0 chr4 102321053 102321274 -81967388 + MLT1K LTR MaLR 320 588 0 195 287 124 70 chr4 102321439 102321568 -81967094 + L2 LINE L2 3137 3272 0 553 272 137 19 chr4 102322027 102322340 -81966322 - L1ME4a LINE L1 -11 6110 5761 21 36 0 0 chr4 102323692 102323720 -81964942 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 102324103 102324124 -81964538 + AT_rich Low_complexity Low_complexity 1 21 0 200 189 0 0 chr4 102324219 102324256 -81964406 + (TG)n Simple_repeat Simple_repeat 2 38 0 801 258 21 0 chr4 102325658 102325848 -81962814 + MIR SINE MIR 69 262 0 450 256 109 28 chr4 102326958 102327169 -81961493 - L2 LINE L2 -5 3308 3081 1253 281 96 11 chr4 102327171 102327620 -81961042 + LTR16C LTR ERVL 5 491 0 3488 252 91 0 chr4 102327647 102328641 -81960021 - L2 LINE L2 -290 3023 1941 722 117 8 23 chr4 102331121 102331249 -81957413 - L1MD1 LINE L1 -1 6241 6116 198 103 0 0 chr4 102331749 102331778 -81956884 + (TCTA)n Simple_repeat Simple_repeat 1 29 0 1605 203 52 9 chr4 102333070 102333400 -81955262 - MER2 DNA MER2_type 0 344 1 211 319 0 0 chr4 102334671 102334740 -81953922 - L2 LINE L2 -2303 1011 943 1651 174 13 17 chr4 102335441 102335739 -81952923 - AluJo SINE Alu -13 299 3 28 0 0 0 chr4 102335851 102335879 -81952783 + AT_rich Low_complexity Low_complexity 1 28 0 480 271 119 14 chr4 102335944 102336154 -81952508 - L2 LINE L2 -1604 1710 1479 1126 113 0 0 chr4 102336335 102336486 -81952176 + AluSq SINE Alu 3 153 -160 619 156 0 0 chr4 102336486 102336613 -81952049 + AluSg/x SINE Alu 190 316 0 8203 190 20 7 chr4 102336613 102338269 -81950393 + L1P LINE L1 2675 4352 -1794 13029 191 51 24 chr4 102338277 102339736 -81948926 + L1PB3 LINE L1 2671 4089 -2781 198 71 0 0 chr4 102339736 102339764 -81948898 + (CAA)n Simple_repeat Simple_repeat 1 28 0 13029 191 51 24 chr4 102339764 102339936 -81948726 + L1PB3 LINE L1 4089 4255 -2615 2358 29 0 0 chr4 102339936 102340212 -81948450 + L1PA3 LINE L1 5880 6155 0 13029 191 51 24 chr4 102340212 102342275 -81946387 + L1PB3 LINE L1 4255 6471 -399 333 68 0 0 chr4 102342275 102342319 -81946343 + (TG)n Simple_repeat Simple_repeat 2 45 0 13029 191 51 24 chr4 102342319 102342443 -81946219 + L1PB3 LINE L1 6471 6590 -280 778 168 0 0 chr4 102342446 102342583 -81946079 + L1PB3 LINE L1 6733 6869 -1 5353 202 38 31 chr4 102342594 102342740 -81945922 + L1M3 LINE L1 3960 4104 -2076 2120 116 3 17 chr4 102342740 102343042 -81945620 - AluSg SINE Alu -10 300 3 5353 202 38 31 chr4 102343042 102344443 -81944219 + L1M3 LINE L1 4104 5524 -656 645 247 62 72 chr4 102344552 102344844 -81943818 - L2 LINE L2 -2495 819 531 254 282 28 0 chr4 102345101 102345172 -81943490 + MIR SINE MIR 179 251 -11 2225 71 0 4 chr4 102345347 102345627 -81943035 + AluY SINE Alu 1 279 -32 189 0 0 0 chr4 102345627 102345648 -81943014 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 416 253 54 81 chr4 102345997 102346252 -81942410 + L1ME LINE L1 5435 5678 -459 210 245 0 0 chr4 102346377 102346430 -81942232 + (TATATG)n Simple_repeat Simple_repeat 6 58 0 264 273 218 12 chr4 102346565 102346730 -81941932 + L2 LINE L2 2926 3124 -189 522 70 0 0 chr4 102346738 102346809 -81941853 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 2119 114 6 22 chr4 102346809 102347125 -81941537 - AluSx SINE Alu -1 311 1 450 211 46 103 chr4 102347129 102347323 -81941339 + L2 LINE L2 3085 3267 -46 219 290 58 97 chr4 102348804 102348959 -81939703 + L3 LINE CR1 1392 1540 -37 2248 88 0 0 chr4 102349116 102349401 -81939261 + AluY SINE Alu 1 285 -26 962 209 0 0 chr4 102349543 102349720 -81938942 - FRAM SINE Alu -5 171 1 316 138 31 0 chr4 102349892 102349957 -81938705 - L1MA9 LINE L1 -33 6279 6213 2230 117 3 0 chr4 102350844 102351152 -81937510 + AluSx SINE Alu 1 309 -3 241 266 70 95 chr4 102351498 102351656 -81937006 + MIR SINE MIR 62 215 -47 243 243 0 0 chr4 102352186 102352256 -81936406 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 978 260 28 12 chr4 102352261 102352515 -81936147 + MIR SINE MIR 5 262 0 1018 294 98 11 chr4 102353085 102353567 -81935095 - L2 LINE L2 -10 3303 2779 656 262 109 11 chr4 102353804 102354170 -81934492 + L1M4 LINE L1 2187 2588 -3558 513 245 68 31 chr4 102354280 102354635 -81934027 + L1M4 LINE L1 2795 3162 -2984 2368 83 0 3 chr4 102354693 102354994 -81933668 - AluSg SINE Alu -10 300 1 423 288 37 85 chr4 102355015 102355556 -81933106 + L1MEd LINE L1 701 1215 -4904 1151 218 5 0 chr4 102355574 102355785 -81932877 + L1PA13 LINE L1 1 212 -6575 205 297 58 97 chr4 102406079 102406234 -81882428 + L3 LINE CR1 1392 1540 -37 2248 88 0 0 chr4 102406391 102406676 -81881986 + AluY SINE Alu 1 285 -26 962 209 0 0 chr4 102406818 102406995 -81881667 - FRAM SINE Alu -5 171 1 316 138 31 0 chr4 102407167 102407232 -81881430 - L1MA9 LINE L1 -33 6279 6213 2219 115 3 0 chr4 102408120 102408424 -81880238 + AluSx SINE Alu 1 305 -7 241 266 70 95 chr4 102408773 102408931 -81879731 + MIR SINE MIR 62 215 -47 243 243 0 0 chr4 102409462 102409532 -81879130 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 978 260 28 12 chr4 102409537 102409791 -81878871 + MIR SINE MIR 5 262 0 1029 285 100 13 chr4 102410361 102410843 -81877819 - L2 LINE L2 -10 3303 2779 656 262 109 11 chr4 102411080 102411446 -81877216 + L1MEd LINE L1 2170 2571 -3558 513 245 68 31 chr4 102411556 102411911 -81876751 + L1MEd LINE L1 2778 3145 -2984 2367 81 0 3 chr4 102411969 102412267 -81876395 - AluSg SINE Alu -13 297 1 399 292 37 85 chr4 102412288 102412829 -81875833 + L1MEd LINE L1 701 1215 -4904 1432 207 0 0 chr4 102412847 102413093 -81875569 + L1PB3 LINE L1 66 311 -6541 1126 113 0 0 chr4 102413178 102413329 -81875333 + AluSq SINE Alu 3 153 -160 610 167 0 0 chr4 102413329 102413456 -81875206 + AluSg/x SINE Alu 190 316 0 8102 189 23 7 chr4 102413456 102415107 -81873555 + L1P LINE L1 2675 4352 -1794 13021 191 51 24 chr4 102415115 102416574 -81872088 + L1PB3 LINE L1 2671 4089 -2781 219 36 0 0 chr4 102416574 102416602 -81872060 + (CAA)n Simple_repeat Simple_repeat 1 28 0 13021 191 51 24 chr4 102416602 102416774 -81871888 + L1PB3 LINE L1 4089 4255 -2615 2358 29 0 0 chr4 102416774 102417050 -81871612 + L1PA3 LINE L1 5880 6155 0 13021 191 51 24 chr4 102417050 102419113 -81869549 + L1PB3 LINE L1 4255 6471 -399 330 87 0 0 chr4 102419113 102419159 -81869503 + (TG)n Simple_repeat Simple_repeat 2 47 0 13021 191 51 24 chr4 102419159 102419283 -81869379 + L1PB3 LINE L1 6471 6590 -280 749 175 0 0 chr4 102419286 102419423 -81869239 + L1PB3 LINE L1 6733 6869 -1 2470 193 34 29 chr4 102419434 102419580 -81869082 + L1MB3 LINE L1 3960 4104 -2079 2106 119 3 16 chr4 102419580 102419883 -81868779 - AluSg SINE Alu -9 301 3 2470 193 34 29 chr4 102419883 102421782 -81866880 + L1MB3 LINE L1 4104 6182 -1 2410 77 3 6 chr4 102422528 102422840 -81865822 + AluY SINE Alu 1 311 0 2067 143 11 85 chr4 102422945 102423375 -81865287 - L1MB3 LINE L1 -2 6181 5784 2294 106 23 52 chr4 102423375 102423761 -81864901 + THE1C LTR MaLR 1 375 0 2067 143 11 85 chr4 102423761 102423778 -81864884 - L1MB3 LINE L1 -399 5784 5767 297 326 135 9 chr4 102423873 102424088 -81864574 - MIR SINE MIR 0 262 21 188 320 90 10 chr4 102424172 102424272 -81864390 + MIR SINE MIR 50 157 -105 702 224 38 11 chr4 102424329 102424512 -81864150 - MIR SINE MIR -62 200 13 274 267 47 12 chr4 102424527 102424613 -81864049 + MIR SINE MIR 174 262 0 282 150 0 25 chr4 102425309 102425363 -81863299 - THE1B LTR MaLR 0 364 305 3110 14 0 0 chr4 102425617 102425970 -81862692 - L1P1 LINE L1 -470 5685 5333 3364 30 0 2 chr4 102425970 102426370 -81862292 + L1PA2 LINE L1 5756 6155 0 26 0 0 0 chr4 102426383 102426409 -81862253 + AT_rich Low_complexity Low_complexity 1 26 0 3155 116 2 29 chr4 102426917 102427110 -81861552 + L1MA2 LINE L1 5793 5990 -314 2195 83 35 7 chr4 102427110 102427398 -81861264 + AluSp SINE Alu 4 299 -14 3155 116 2 29 chr4 102427398 102427730 -81860932 + L1MA2 LINE L1 5990 6304 0 389 340 114 40 chr4 102427794 102428414 -81860248 - L2 LINE L2 -202 3070 2348 1038 123 0 7 chr4 102429228 102429382 -81859280 + MER4E LTR ERV1 614 766 0 1934 122 85 0 chr4 102429488 102429817 -81858845 - L1MB3 LINE L1 -2 6181 5825 418 277 56 66 chr4 102430503 102430716 -81857946 + MIR SINE MIR 9 219 -43 844 316 61 9 chr4 102431067 102431393 -81857269 + LTR16A LTR ERVL 105 447 -3 254 274 48 0 chr4 102431486 102431548 -81857114 + L2 LINE L2 3204 3268 -4 26 0 0 0 chr4 102431603 102431629 -81857033 + AT_rich Low_complexity Low_complexity 1 26 0 209 299 221 19 chr4 102431773 102431927 -81856735 - L2 LINE L2 -6 3307 3123 1592 244 17 75 chr4 102431933 102432508 -81856154 + MER34 LTR ERV1 1 542 0 203 333 108 0 chr4 102432510 102432603 -81856059 - L2 LINE L2 -243 3070 2968 1236 14 0 0 chr4 102432608 102432750 -81855912 + (CTATT)n Simple_repeat Simple_repeat 4 145 0 1521 164 36 0 chr4 102432772 102432898 -81855764 - AluSx SINE Alu -53 259 139 216 0 0 0 chr4 102432898 102432922 -81855740 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1521 164 36 0 chr4 102432922 102433045 -81855617 - AluSx SINE Alu -173 139 1 1469 295 70 21 chr4 102434412 102434924 -81853738 - MER115 DNA AcHobo -17 676 140 244 231 22 22 chr4 102435194 102435285 -81853377 + CT-rich Low_complexity Low_complexity 2 92 0 1520 195 10 75 chr4 102436304 102436693 -81851969 - MLT1A1 LTR MaLR -1 364 1 257 194 0 14 chr4 102436872 102436944 -81851718 + (TA)n Simple_repeat Simple_repeat 2 72 0 259 264 209 11 chr4 102437407 102437498 -81851164 - L2 LINE L2 0 3313 3205 560 332 25 5 chr4 102439366 102439565 -81849097 - MIR SINE MIR -31 231 29 2415 145 0 0 chr4 102439568 102439947 -81848715 + L1PA16 LINE L1 5779 6157 -9 202 106 43 0 chr4 102440135 102440182 -81848480 + (TTTAA)n Simple_repeat Simple_repeat 3 51 0 210 244 0 0 chr4 102442968 102443013 -81845649 + (TATG)n Simple_repeat Simple_repeat 4 48 0 448 278 0 0 chr4 102443636 102443726 -81844936 - Tigger3(Golem) DNA MER2_type 0 3029 2940 1918 186 30 0 chr4 102443752 102444086 -81844576 - MER7A DNA MER2_type -3 343 2 229 174 61 174 chr4 102444241 102444339 -81844323 + MLT1L LTR MaLR 4 90 -525 338 331 39 31 chr4 102445101 102445231 -81843431 + MIR SINE MIR 19 149 -59 1169 293 15 27 chr4 102445237 102445640 -81843022 + MLT1I LTR MaLR 9 406 -3 1305 330 93 17 chr4 102445775 102446560 -81842102 - L2 LINE L2 -635 2679 1835 3272 113 0 6 chr4 102446637 102447117 -81841545 - L1PA15 LINE L1 -15 6150 5674 460 312 38 6 chr4 102447176 102447333 -81841329 - MIR SINE MIR -96 166 5 258 259 35 59 chr4 102447299 102447384 -81841278 + L2 LINE L2 3173 3255 -17 * 198 333 12 12 chr4 102447438 102447519 -81841143 + MER5A DNA MER1_type 109 189 0 266 367 14 27 chr4 102447526 102447673 -81840989 + L2 LINE L2 2636 2780 -534 764 266 169 35 chr4 102447723 102448278 -81840384 - MLT1G LTR MaLR 0 590 6 1976 96 4 11 chr4 102448284 102448565 -81840097 + MLT2A1 LTR ERVL 1 279 -165 402 73 0 0 chr4 102448583 102448638 -81840024 + MLT2A1 LTR ERVL 399 453 0 21 0 0 0 chr4 102449871 102449892 -81838770 + AT_rich Low_complexity Low_complexity 1 21 0 186 243 122 40 chr4 102450420 102450494 -81838168 + MIR3 SINE MIR 87 166 -42 24 0 0 0 chr4 102450840 102450864 -81837798 + AT_rich Low_complexity Low_complexity 1 24 0 527 314 75 18 chr4 102451320 102451546 -81837116 - MIR SINE MIR 0 262 24 7946 114 12 21 chr4 102453705 102454912 -81833750 + HSMAR2 DNA Mariner 1 1195 -107 519 283 24 63 chr4 102455077 102455282 -81833380 - L1MEd LINE L1 -5498 621 425 302 267 238 0 chr4 102455283 102455388 -81833274 - L2 LINE L2 0 3313 3184 712 299 63 10 chr4 102455426 102455727 -81832935 - L1MEd LINE L1 -5791 328 12 530 327 73 32 chr4 102455751 102456121 -81832541 + L2 LINE L2 2872 3256 -57 245 271 35 35 chr4 102456218 102456362 -81832300 + L1MC5 LINE L1 7324 7467 -494 467 294 93 34 chr4 102456768 102456860 -81831802 - MIR SINE MIR -2 260 175 2918 100 24 2 chr4 102456860 102457279 -81831383 - MSTA LTR MaLR 0 428 1 467 294 93 34 chr4 102457279 102457390 -81831272 - MIR SINE MIR -87 175 45 206 175 18 88 chr4 102457504 102457561 -81831101 + MIR SINE MIR 210 262 0 263 275 37 18 chr4 102458434 102458543 -81830119 - L1ME LINE L1 -341 5780 5670 190 371 21 50 chr4 102458804 102458944 -81829718 + L2 LINE L2 2903 3038 -234 210 37 0 0 chr4 102458980 102459007 -81829655 + (T)n Simple_repeat Simple_repeat 1 27 0 2315 91 0 7 chr4 102459393 102459701 -81828961 - AluY SINE Alu -1 310 5 306 273 25 96 chr4 102460176 102460374 -81828288 + L1ME LINE L1 5191 5374 -772 244 267 0 47 chr4 102460591 102460677 -81827985 + L1ME LINE L1 5586 5667 -454 2219 87 3 7 chr4 102460818 102461116 -81827546 + L1PA10 LINE L1 5866 6162 -6 827 141 15 7 chr4 102461739 102461874 -81826788 + AluJo SINE Alu 1 136 -176 681 201 182 81 chr4 102462079 102462601 -81826061 + L1MC5 LINE L1 7191 7765 -196 2076 119 10 0 chr4 102462759 102463061 -81825601 - AluSq SINE Alu -8 305 1 4951 268 103 56 chr4 102463137 102464337 -81824325 + L2 LINE L2 881 2023 -1290 2456 64 0 0 chr4 102464337 102464635 -81824027 - AluY SINE Alu -13 298 1 4951 268 103 56 chr4 102464635 102465754 -81822908 + L2 LINE L2 2023 3312 -1 22 80 0 0 chr4 102466182 102466232 -81822430 + AT_rich Low_complexity Low_complexity 1 50 0 207 100 75 0 chr4 102466310 102466350 -81822312 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 424 269 123 35 chr4 102468483 102469034 -81819628 + L1ME4a LINE L1 3354 3953 -2193 32 0 0 0 chr4 102469034 102469066 -81819596 + AT_rich Low_complexity Low_complexity 1 32 0 1359 62 0 0 chr4 102469066 102469228 -81819434 - AluY SINE Alu -25 286 125 235 299 26 26 chr4 102469245 102469362 -81819300 + L1ME4a LINE L1 3964 4080 -2066 856 205 28 71 chr4 102469531 102469676 -81818986 + LTR37B LTR ERV1 198 348 -120 387 0 0 0 chr4 102469676 102469719 -81818943 + (TG)n Simple_repeat Simple_repeat 2 44 0 1824 153 0 14 chr4 102469719 102470007 -81818655 - AluJb SINE Alu -28 284 1 856 205 28 71 chr4 102470007 102470143 -81818519 + LTR37B LTR ERV1 346 468 0 799 313 50 20 chr4 102470144 102470744 -81817918 + L1ME4a LINE L1 4076 4693 -1453 302 191 59 0 chr4 102470786 102470854 -81817808 + L1ME4a LINE L1 4761 4832 -1314 302 156 0 0 chr4 102470928 102471000 -81817662 + Alu SINE Alu 240 311 0 287 286 30 2 chr4 102471049 102471206 -81817456 + L1ME4a LINE L1 4959 5117 -1029 588 297 42 93 chr4 102471387 102472050 -81816612 + L1ME3A LINE L1 5320 5948 -222 1903 155 31 20 chr4 102472284 102472639 -81816023 + L1PA16 LINE L1 5803 6161 -5 241 265 102 10 chr4 102472952 102473050 -81815612 - MLT1K LTR MaLR -47 541 435 1063 211 5 5 chr4 102473633 102473851 -81814811 - MER2 DNA MER2_type -127 218 1 2210 79 7 0 chr4 102473926 102474233 -81814429 + AluSx SINE Alu 2 310 0 1285 66 36 0 chr4 102474235 102474402 -81814260 + AluSp SINE Alu 133 305 -8 367 281 121 57 chr4 102474747 102475253 -81813409 + L1ME4a LINE L1 5317 5818 -303 378 276 107 31 chr4 102475261 102475486 -81813176 + L1ME4a LINE L1 5874 6115 -6 37 39 0 0 chr4 102475513 102475564 -81813098 + AT_rich Low_complexity Low_complexity 1 51 0 3163 148 15 57 chr4 102476284 102476833 -81811829 - MER1A DNA MER1_type -3 526 1 1833 157 0 41 chr4 102477243 102477378 -81811284 + AluJo SINE Alu 6 145 -167 2077 114 0 28 chr4 102477378 102477667 -81810995 + AluSx SINE Alu 1 281 -31 339 25 0 0 chr4 102477667 102477707 -81810955 + (CA)n Simple_repeat Simple_repeat 1 40 0 1833 157 0 41 chr4 102477707 102477889 -81810773 + AluJo SINE Alu 143 311 -1 14001 183 22 35 chr4 102478026 102482488 -81806174 + L1PB1 LINE L1 1981 6483 -370 459 0 0 0 chr4 102482488 102482539 -81806123 + (TA)n Simple_repeat Simple_repeat 1 51 0 14001 183 22 35 chr4 102482539 102482905 -81805757 + L1PB1 LINE L1 6483 6852 -1 692 309 51 56 chr4 102483049 102483479 -81805183 + L2 LINE L2 2281 2708 -606 1550 195 72 62 chr4 102483595 102483876 -81804786 - MER89 LTR ERV1 0 559 282 1389 161 17 67 chr4 102483876 102484175 -81804487 + AluJb SINE Alu 1 284 -28 1550 195 72 62 chr4 102484175 102484346 -81804316 - MER89 LTR ERV1 -277 282 3 678 225 0 0 chr4 102484691 102484864 -81803798 + C-rich Low_complexity Low_complexity 5 177 0 2169 125 16 0 chr4 102485105 102485410 -81803252 + AluSx SINE Alu 1 310 -2 183 42 0 0 chr4 102485908 102485932 -81802730 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chr4 102486217 102486245 -81802417 + AT_rich Low_complexity Low_complexity 1 28 0 1334 178 54 7 chr4 102486851 102487149 -81801513 + MER33 DNA MER1_type 2 313 -11 1284 288 95 40 chr4 102487221 102488065 -81800597 - L2 LINE L2 -28 3285 2379 215 349 80 48 chr4 102488130 102488379 -81800283 - L2 LINE L2 -191 3081 2825 570 256 41 12 chr4 102488862 102489034 -81799628 + LTR33 LTR ERVL 326 502 -19 524 264 52 129 chr4 102489160 102489486 -81799176 - MLT1J LTR MaLR -210 301 1 187 284 0 75 chr4 102490865 102490932 -81797730 - L2 LINE L2 -4 3309 3248 2360 84 3 0 chr4 102491801 102492099 -81796563 - AluSg SINE Alu -11 299 1 981 261 27 1 chr4 102492239 102492546 -81796116 - L1ME LINE L1 -565 5668 5334 314 189 57 13 chr4 102492563 102492722 -81795940 + (TAA)n Simple_repeat Simple_repeat 3 168 0 369 273 50 0 chr4 102492730 102492851 -81795811 - L1ME LINE L1 -851 5364 5238 638 57 0 11 chr4 102492858 102492946 -81795716 + (TTCC)n Simple_repeat Simple_repeat 2 88 0 3933 97 17 20 chr4 102492947 102493534 -81795128 + SVA Other Other 58 642 -744 768 33 0 0 chr4 102493569 102493661 -81795001 + HERVK LTR ERVK 7152 7243 0 2152 42 19 0 chr4 102493661 102493921 -81794741 + LTR5 LTR ERVK 1 265 -704 3700 16 0 0 chr4 102493921 102494582 -81794080 - L1PA2 LINE L1 -480 5675 5015 4454 12 0 0 chr4 102494582 102495124 -81793538 + L1PA2 LINE L1 5650 6405 -8 1578 62 0 14 chr4 102495124 102495332 -81793330 + SVA Other Other 1182 1386 0 3194 244 71 2 chr4 102495349 102495690 -81792972 - L1ME LINE L1 -984 5231 4915 180 0 0 0 chr4 102495690 102495710 -81792952 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 3194 244 71 2 chr4 102495710 102496397 -81792265 - L1ME LINE L1 -1300 4915 4132 600 289 49 16 chr4 102496445 102496691 -81791971 - L1ME LINE L1 -6094 302 49 805 135 47 94 chr4 102496943 102497113 -81791549 + MER20B DNA MER1_type 7 168 -51 248 311 57 19 chr4 102497307 102497413 -81791249 + L2 LINE L2 3199 3308 -5 1160 337 33 6 chr4 102497623 102498104 -81790558 + MLT1J LTR MaLR 5 498 -13 287 229 106 65 chr4 102498457 102498627 -81790035 - MLT1H LTR MaLR -323 226 50 486 49 0 0 chr4 102499147 102499208 -81789454 + (TA)n Simple_repeat Simple_repeat 1 61 0 2364 85 13 3 chr4 102499208 102499514 -81789148 - AluSg SINE Alu 0 310 2 8166 149 2 5 chr4 102499830 102502081 -81786581 + L1PA11 LINE L1 3928 6174 0 1901 179 0 3 chr4 102502255 102502567 -81786095 + AluJb SINE Alu 1 311 -1 2245 166 0 5 chr4 102504093 102504460 -81784202 - MLT1A1 LTR MaLR 0 365 1 1045 71 7 0 chr4 102504746 102504886 -81783776 + LTR17 LTR ERV1 184 324 -456 443 35 17 0 chr4 102504950 102505008 -81783654 - LTR17 LTR ERV1 -721 59 1 2238 62 3 0 chr4 102505008 102505299 -81783363 - HERV17 LTR ERV1 0 8626 8335 304 26 0 0 chr4 102505289 102505328 -81783334 - HERV17 LTR ERV1 -1078 7548 7510 * 8126 44 17 5 chr4 102505321 102506362 -81782300 - HERV17 LTR ERV1 -2607 6019 4966 470 194 66 82 chr4 102506375 102506571 -81782091 + MER20B DNA MER1_type 560 752 -31 1795 176 27 83 chr4 102506574 102507058 -81781604 - L1M4 LINE L1 -402 5776 5320 5513 43 3 1 chr4 102507077 102507754 -81780908 - L1PA7 LINE L1 0 6154 5477 28 48 0 0 chr4 102507754 102507796 -81780866 + AT_rich Low_complexity Low_complexity 1 42 0 1229 69 18 133 chr4 102509534 102509873 -81778789 - L1PA7 LINE L1 -641 5490 5193 * 1696 206 50 12 chr4 102509870 102510269 -81778393 + L1MB5 LINE L1 5755 6168 -6 1311 215 102 27 chr4 102510319 102510761 -81777901 - Charlie4a DNA MER1_type -4 504 30 291 77 0 0 chr4 102510968 102511007 -81777655 - U6 snRNA snRNA -68 39 1 976 207 6 0 chr4 102511979 102512158 -81776504 - AluSg/x SINE Alu 0 312 133 309 95 0 0 chr4 102512158 102512200 -81776462 - Alu SINE Alu -258 43 2 2321 54 3 17 chr4 102512236 102512531 -81776131 + AluY SINE Alu 1 291 -20 354 300 35 57 chr4 102512584 102512811 -81775851 - L2 LINE L2 -1 3312 3091 339 248 46 9 chr4 102512814 102512923 -81775739 - MER20B DNA MER1_type -235 548 436 834 242 35 42 chr4 102512926 102513211 -81775451 - MER20B DNA MER1_type -474 309 27 3414 164 15 5 chr4 102514990 102515606 -81773056 - L1MC1 LINE L1 0 6333 5712 324 0 0 0 chr4 102515612 102515648 -81773014 + (TG)n Simple_repeat Simple_repeat 1 36 0 1659 140 57 33 chr4 102515650 102515985 -81772677 - L1PA15 LINE L1 -74 6091 5749 506 199 29 0 chr4 102515988 102516124 -81772538 - L1M4 LINE L1 -816 5330 5191 865 283 81 25 chr4 102516954 102517311 -81771351 + LTR16A LTR ERVL 63 439 -11 1823 164 3 13 chr4 102518360 102518658 -81770004 - AluJb SINE Alu -17 295 1 238 146 0 0 chr4 102518859 102518900 -81769762 - MLT2F LTR ERVL -621 42 2 347 138 0 100 chr4 102519159 102519239 -81769423 - AluJ/F(R)AM SINE Alu -96 206 141 2107 122 10 3 chr4 102519240 102519551 -81769111 + AluSp SINE Alu 1 313 0 228 214 0 0 chr4 102519741 102519783 -81768879 + L2 LINE L2 3250 3291 -22 237 264 91 66 chr4 102521123 102521244 -81767418 + MIR SINE MIR 22 145 -117 562 254 35 75 chr4 102521845 102522046 -81766616 + MIR3 SINE MIR 5 197 -11 354 302 121 34 chr4 102522817 102522966 -81765696 + MIR3 SINE MIR 3 164 -44 409 304 72 0 chr4 102523348 102523486 -81765176 + MIR SINE MIR 115 262 0 894 203 6 11 chr4 102523635 102523812 -81764850 - AluJb SINE Alu -1 311 136 2453 287 97 32 chr4 102525567 102525900 -81762762 + L2 LINE L2 1840 2150 -1163 1012 193 41 32 chr4 102525900 102526118 -81762544 - MER58A DNA MER1_type 0 224 5 2453 287 97 32 chr4 102526118 102526953 -81761709 + L2 LINE L2 2150 3081 -232 3837 156 18 18 chr4 102526953 102527664 -81760998 + MER50 LTR ERV1 1 711 -23 334 311 124 38 chr4 102527665 102527874 -81760788 + L2 LINE L2 3083 3309 -4 552 252 64 0 chr4 102528126 102528344 -81760318 + HAL1 LINE L1 1103 1334 -1173 910 242 153 12 chr4 102528421 102528760 -81759902 + HAL1 LINE L1 1514 1900 -607 389 326 21 21 chr4 102528942 102529086 -81759576 - MER5A DNA MER1_type 0 189 46 2140 118 103 3 chr4 102529267 102529598 -81759064 - THE1B LTR MaLR 0 364 1 11441 89 19 3 chr4 102529598 102531153 -81757509 - THE1B-int LTR MaLR 0 1580 1 1997 147 93 0 chr4 102531153 102531486 -81757176 - THE1B LTR MaLR 0 364 1 304 234 99 7 chr4 102531551 102531692 -81756970 + HAL1 LINE L1 2245 2398 -109 2706 150 36 17 chr4 102532452 102532926 -81755736 + MER72 LTR ERV1 1 483 -239 487 95 40 0 chr4 102532916 102532990 -81755672 + MER72 LTR ERV1 646 722 0 * 721 164 25 0 chr4 102533671 102533793 -81754869 + MER2 DNA MER2_type 1 125 -220 440 196 156 39 chr4 102533849 102534028 -81754634 + MER2 DNA MER2_type 121 320 -25 1804 206 83 46 chr4 102534099 102534690 -81753972 - L1ME1 LINE L1 -21 6145 5533 363 289 0 11 chr4 102535086 102535176 -81753486 - L2 LINE L2 -4 3309 3221 2252 96 23 0 chr4 102535305 102535608 -81753054 - AluSx SINE Alu -2 310 1 1306 162 22 41 chr4 102535663 102535978 -81752684 - L1MD3 LINE L1 -6 7989 7681 1445 164 115 35 chr4 102535979 102536286 -81752376 - L1MD3 LINE L1 -912 7083 6743 1597 149 106 7 chr4 102536286 102536561 -81752101 + AluJo SINE Alu 1 302 -10 1445 164 115 35 chr4 102536561 102536600 -81752062 - L1MD3 LINE L1 -1252 6743 6709 282 288 234 15 chr4 102537761 102537966 -81750696 - MIR SINE MIR 0 262 13 304 337 10 0 chr4 102538618 102538716 -81749946 - MIR SINE MIR -151 111 13 207 264 0 0 chr4 102538804 102538857 -81749805 + (TG)n Simple_repeat Simple_repeat 2 54 0 603 212 218 6 chr4 102538955 102539134 -81749528 - L2 LINE L2 0 3313 3097 2251 59 0 24 chr4 102539517 102539864 -81748798 + AluY SINE Alu 1 340 0 1348 139 32 4 chr4 102540722 102540973 -81747689 - L1MB3 LINE L1 -1 6182 5925 591 269 29 29 chr4 102541591 102541766 -81746896 + MER5A DNA MER1_type 15 189 0 352 301 12 75 chr4 102542943 102543116 -81745546 + MER5B DNA MER1_type 11 172 -6 613 224 247 20 chr4 102543132 102543244 -81745418 - MER5C DNA MER1_type -5 319 234 2658 42 0 0 chr4 102543244 102543552 -81745110 + AluY SINE Alu 1 308 -3 1485 141 9 0 chr4 102543553 102543780 -81744882 + AluY SINE Alu 77 305 -6 613 224 247 20 chr4 102543780 102543920 -81744742 - MER5C DNA MER1_type -89 235 7 30 27 0 0 chr4 102544254 102544291 -81744371 + AT_rich Low_complexity Low_complexity 1 37 0 192 301 32 65 chr4 102544300 102544393 -81744269 - MIR SINE MIR -56 206 117 34 0 0 22 chr4 102544874 102544904 -81743758 + AT_rich Low_complexity Low_complexity 1 31 -13 2897 0 0 0 chr4 102544904 102545214 -81743448 - AluYa8 SINE Alu 0 310 1 34 0 0 22 chr4 102545214 102545228 -81743434 + AT_rich Low_complexity Low_complexity 31 44 0 23 0 0 0 chr4 102545560 102545583 -81743079 + AT_rich Low_complexity Low_complexity 1 23 0 2051 146 0 37 chr4 102546105 102546426 -81742236 + AluSx SINE Alu 1 309 -3 2706 145 50 18 chr4 102546481 102547027 -81741635 - L1MA7 LINE L1 -1 6290 5728 1393 139 4 4 chr4 102547037 102547274 -81741388 - L1MA7 LINE L1 -1885 4261 4025 38 0 0 0 chr4 102548509 102548547 -81740115 + AT_rich Low_complexity Low_complexity 1 38 0 192 243 203 0 chr4 102548993 102549067 -81739595 - L2 LINE L2 0 3272 3184 473 199 157 42 chr4 102549134 102549300 -81739362 + MIR SINE MIR 68 252 -10 22 35 0 0 chr4 102549428 102549457 -81739205 + AT_rich Low_complexity Low_complexity 1 29 0 560 310 47 37 chr4 102549645 102549982 -81738680 + L2 LINE L2 2614 2954 -318 * 1248 260 81 35 chr4 102549975 102550410 -81738252 - L2 LINE L2 -1 3312 2858 219 69 0 0 chr4 102550482 102550511 -81738151 + (GA)n Simple_repeat Simple_repeat 1 29 0 414 0 0 0 chr4 102550513 102550559 -81738103 + (TG)n Simple_repeat Simple_repeat 1 46 0 180 0 0 0 chr4 102550686 102550706 -81737956 + (T)n Simple_repeat Simple_repeat 1 20 0 927 294 114 15 chr4 102550758 102551214 -81737448 + L2 LINE L2 2813 3313 0 519 237 178 7 chr4 102551740 102551892 -81736770 + MIR SINE MIR 70 247 -15 863 219 0 0 chr4 102551989 102552144 -81736518 + FRAM SINE Alu 8 162 -14 536 281 112 19 chr4 102552579 102552927 -81735735 - L1ME LINE L1 -514 5648 5260 223 344 23 23 chr4 102553410 102553541 -81735121 + L3 LINE CR1 1349 1479 -98 2173 96 7 3 chr4 102553590 102553892 -81734770 + AluY SINE Alu 1 303 -8 2193 50 7 4 chr4 102554176 102554457 -81734205 + L1PA4 LINE L1 5866 6147 -8 22 0 0 0 chr4 102554491 102554513 -81734149 + AT_rich Low_complexity Low_complexity 1 22 0 241 170 0 21 chr4 102554606 102554653 -81734009 + L2 LINE L2 3268 3313 0 273 333 58 0 chr4 102554849 102554969 -81733693 + MIR SINE MIR 46 172 -90 23 0 0 0 chr4 102556089 102556112 -81732550 + AT_rich Low_complexity Low_complexity 1 23 0 767 246 78 24 chr4 102556358 102556525 -81732137 + MER58A DNA MER1_type 1 176 -48 24 0 0 0 chr4 102556525 102556549 -81732113 + AT_rich Low_complexity Low_complexity 1 24 0 213 369 25 25 chr4 102556730 102556887 -81731775 + L2 LINE L2 1250 1406 -1908 6912 190 46 7 chr4 102556911 102557907 -81730755 - L1P5 LINE L1 -714 6145 5068 233 56 0 28 chr4 102557907 102557943 -81730719 + (TG)n Simple_repeat Simple_repeat 1 35 0 6912 190 46 7 chr4 102557943 102558570 -81730092 - L1P5 LINE L1 -1791 5068 4467 361 232 89 0 chr4 102558587 102558699 -81729963 - L1P5 LINE L1 -3587 3262 3141 * 498 149 0 23 chr4 102558693 102558780 -81729882 - L1P5 LINE L1 -4452 2397 2313 232 195 0 0 chr4 102558780 102558821 -81729841 - U6 snRNA snRNA 0 107 67 960 218 104 0 chr4 102559567 102559760 -81728902 - MER20 DNA MER1_type 0 219 7 268 308 131 0 chr4 102559889 102560019 -81728643 - L3 LINE CR1 -336 1241 1095 750 177 8 0 chr4 102560026 102560156 -81728506 + FLAM_C SINE Alu 3 133 0 1228 164 3 31 chr4 102561823 102562110 -81726552 + L1PA4 LINE L1 5869 6147 -8 241 170 0 21 chr4 102562259 102562306 -81726356 + L2 LINE L2 3268 3313 0 273 333 58 0 chr4 102562502 102562622 -81726040 + MIR SINE MIR 46 172 -90 23 0 0 0 chr4 102563742 102563765 -81724897 + AT_rich Low_complexity Low_complexity 1 23 0 767 246 78 24 chr4 102564011 102564178 -81724484 + MER58A DNA MER1_type 1 176 -48 24 0 0 0 chr4 102564178 102564202 -81724460 + AT_rich Low_complexity Low_complexity 1 24 0 218 367 25 25 chr4 102564382 102564540 -81724122 + L2 LINE L2 1249 1406 -1908 6823 192 45 7 chr4 102564563 102565560 -81723102 - L1P5 LINE L1 -714 6145 5069 233 56 0 28 chr4 102565560 102565596 -81723066 + (TG)n Simple_repeat Simple_repeat 1 35 0 6823 192 45 7 chr4 102565596 102566223 -81722439 - L1P5 LINE L1 -1790 5069 4467 363 241 89 0 chr4 102566240 102566352 -81722310 - L1P5 LINE L1 -3587 3262 3141 * 490 161 0 23 chr4 102566346 102566433 -81722229 - L1P5 LINE L1 -4452 2397 2313 232 195 0 0 chr4 102566433 102566474 -81722188 - U6 snRNA snRNA 0 107 67 960 218 104 0 chr4 102567220 102567413 -81721249 - MER20 DNA MER1_type 0 219 7 268 308 131 0 chr4 102567542 102567672 -81720990 - L3 LINE CR1 -336 1241 1095 750 177 8 0 chr4 102567679 102567809 -81720853 + FLAM_C SINE Alu 3 133 0 588 316 38 19 chr4 102568763 102568972 -81719690 - MIR SINE MIR -41 221 9 1549 77 50 9 chr4 102568972 102569193 -81719469 + MER30 DNA MER1_type 1 230 0 3666 149 55 22 chr4 102569695 102570418 -81718244 - L1MB5 LINE L1 0 6174 5428 436 175 22 36 chr4 102570533 102570670 -81717992 - L1MA9 LINE L1 0 6312 6178 436 364 46 29 chr4 102570754 102570993 -81717669 + MIR SINE MIR 7 249 -13 285 248 38 29 chr4 102572858 102572963 -81715699 - L1M LINE L1 -2399 5409 5304 1816 67 8 0 chr4 102572976 102573216 -81715446 - L1PA7 LINE L1 -3 6151 5910 13673 140 22 26 chr4 102573224 102575588 -81713074 - L1P LINE L1 -3783 2363 11 556 223 39 8 chr4 102575658 102575788 -81712874 - L1ME2 LINE L1 -27 6137 6004 1716 273 95 30 chr4 102575808 102576040 -81712622 - L1MEc LINE L1 -4795 1601 1386 423 56 0 0 chr4 102576040 102576094 -81712568 + (TG)n Simple_repeat Simple_repeat 2 55 0 1716 273 95 30 chr4 102576094 102576859 -81711803 - L1MEc LINE L1 -5010 1386 539 695 249 28 5 chr4 102577043 102577256 -81711406 - L1MEc LINE L1 -6104 292 75 241 125 36 18 chr4 102577825 102577881 -81710781 + CT-rich Low_complexity Low_complexity 1 57 0 439 299 126 10 chr4 102578164 102578371 -81710291 + MIR SINE MIR 32 262 0 1812 153 10 3 chr4 102579756 102580044 -81708618 - AluSx SINE Alu -21 291 2 21 57 0 0 chr4 102580208 102580243 -81708419 + AT_rich Low_complexity Low_complexity 1 35 0 29 0 0 0 chr4 102580346 102580375 -81708287 + AT_rich Low_complexity Low_complexity 1 29 0 619 213 22 0 chr4 102581401 102581537 -81707125 + FLAM_C SINE Alu 1 139 -4 1832 121 4 7 chr4 102581576 102581848 -81706814 + AluSp SINE Alu 43 313 0 2024 52 0 0 chr4 102582385 102582634 -81706028 + L1PA4 LINE L1 5892 6140 -15 261 0 0 0 chr4 102582637 102582666 -81705996 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 483 303 66 41 chr4 102583681 102583925 -81704737 - MIR SINE MIR -8 254 5 337 285 38 82 chr4 102584283 102584441 -81704221 + MIR3 SINE MIR 43 193 -15 230 333 13 13 chr4 102584603 102584681 -81703981 - MIR SINE MIR -180 82 5 368 276 57 0 chr4 102585908 102586013 -81702649 + MIR SINE MIR 81 191 -71 5336 184 138 22 chr4 102586021 102587508 -81701154 + MER52A LTR ERV1 42 1755 0 338 290 154 28 chr4 102587510 102587796 -81700866 - L1ME2 LINE L1 -2181 5627 5306 370 287 62 43 chr4 102587877 102588086 -81700576 - L1ME2 LINE L1 -960 5186 4974 6987 97 335 9 chr4 102588327 102592873 -81695789 - L1PA6 LINE L1 -2 6152 11 181 338 9 137 chr4 102593563 102593782 -81694880 + L2 LINE L2 3001 3191 -81 2589 201 39 24 chr4 102593801 102594438 -81694224 - L1ME1 LINE L1 -9 6226 5580 384 215 29 81 chr4 102594539 102594711 -81693951 - L1ME1 LINE L1 -4574 1822 1660 752 35 0 0 chr4 102594717 102594804 -81693858 - U6 snRNA snRNA -3 104 18 345 344 50 0 chr4 102594810 102594970 -81693692 - L1ME1 LINE L1 -4732 1664 1497 1184 205 9 18 chr4 102594980 102595209 -81693453 - MER8 DNA MER2_type 0 239 13 486 266 66 66 chr4 102595218 102595862 -81692800 - L1ME1 LINE L1 -4775 1440 846 21 71 0 0 chr4 102596355 102596397 -81692265 + AT_rich Low_complexity Low_complexity 1 42 0 2374 56 0 7 chr4 102596694 102597008 -81691654 - AluY SINE Alu 0 312 1 278 320 177 7 chr4 102597165 102597312 -81691350 - MIR SINE MIR -71 191 20 28 29 0 0 chr4 102597443 102597478 -81691184 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr4 102597626 102597661 -81691001 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr4 102598293 102598335 -81690327 + AT_rich Low_complexity Low_complexity 1 42 0 1373 186 3 67 chr4 102598464 102598828 -81689834 + AluJb SINE Alu 1 344 0 1055 330 85 16 chr4 102598901 102599436 -81689226 + L2 LINE L2 2499 3070 -243 777 163 31 0 chr4 102599547 102599676 -81688986 - FLAM_A SINE Alu 0 133 1 743 144 0 0 chr4 102600248 102600373 -81688289 + L1MB4 LINE L1 6054 6178 -2 211 386 57 23 chr4 102600444 102600620 -81688042 + MIR SINE MIR 2 133 -75 1421 159 60 20 chr4 102601187 102601438 -81687224 - AluSq SINE Alu -47 266 6 2241 172 6 0 chr4 102602204 102602558 -81686104 - Tigger7 DNA MER2_type -377 356 1 260 310 101 47 chr4 102602838 102602967 -81685695 + L2 LINE L2 3137 3272 0 25 31 0 0 chr4 102603421 102603453 -81685209 + AT_rich Low_complexity Low_complexity 1 32 0 39 88 0 0 chr4 102604047 102604149 -81684513 + AT_rich Low_complexity Low_complexity 1 102 0 2227 166 43 10 chr4 102604362 102604779 -81683883 - MSTB1 LTR MaLR -1 431 1 817 275 8 57 chr4 102605459 102605546 -81683116 - MIR SINE MIR -19 243 153 959 216 82 5 chr4 102605546 102605754 -81682908 - MER58A DNA MER1_type 0 224 1 817 275 8 57 chr4 102605754 102605910 -81682752 - MIR SINE MIR -109 153 12 182 356 60 34 chr4 102606202 102606351 -81682311 - L2 LINE L2 -35 3278 3126 25 0 0 0 chr4 102607285 102607310 -81681352 + AT_rich Low_complexity Low_complexity 1 25 0 691 242 76 16 chr4 102607721 102607929 -81680733 - MIR SINE MIR 0 262 41 2200 125 0 22 chr4 102607929 102608248 -81680414 - AluSx SINE Alu 0 312 1 691 242 76 16 chr4 102608248 102608263 -81680399 - MIR SINE MIR -221 41 28 377 325 7 26 chr4 102608641 102608792 -81679870 + MER5A DNA MER1_type 39 186 -3 1601 171 36 0 chr4 102608792 102609112 -81679550 - AluJo SINE Alu 0 330 1 555 379 80 42 chr4 102609178 102609605 -81679057 + L2 LINE L2 2826 3268 -4 2318 106 0 0 chr4 102609632 102609933 -81678729 - AluSx SINE Alu -11 301 1 6106 92 33 2 chr4 102610964 102612370 -81676292 - L1PA8 LINE L1 0 6172 4774 264 217 0 0 chr4 102613019 102613065 -81675597 + L2 LINE L2 3234 3279 -34 2174 128 0 0 chr4 102613475 102613779 -81674883 - AluSx SINE Alu -8 304 1 62 0 0 0 chr4 102613872 102613934 -81674728 + AT_rich Low_complexity Low_complexity 1 62 0 537 162 39 123 chr4 102614023 102614227 -81674435 + MER53 DNA DNA 1 187 -2 501 126 0 23 chr4 102614536 102614623 -81674039 - L1PA11 LINE L1 -4 6170 6086 222 363 148 0 chr4 102615260 102615395 -81673267 - L3b LINE CR1 -139 1444 1290 1968 163 0 3 chr4 102616141 102616441 -81672221 + AluSx SINE Alu 1 299 -13 220 62 21 42 chr4 102616862 102616910 -81671752 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 971 279 59 62 chr4 102616954 102617619 -81671043 - L2 LINE L2 -55 3258 2605 1686 169 0 20 chr4 102619308 102619604 -81669058 - AluJo SINE Alu -22 290 1 189 147 0 0 chr4 102619763 102619797 -81668865 + (TG)n Simple_repeat Simple_repeat 1 34 0 227 304 83 32 chr4 102619972 102620285 -81668377 + L1ME LINE L1 2677 3005 -3141 431 248 78 39 chr4 102620431 102620766 -81667896 + L1ME LINE L1 3121 3468 -2678 300 299 34 27 chr4 102620770 102620917 -81667745 + L1ME LINE L1 4533 4680 -1466 524 264 79 45 chr4 102620965 102621423 -81667239 + L1ME LINE L1 5174 5650 -512 21 36 0 0 chr4 102621679 102621707 -81666955 + AT_rich Low_complexity Low_complexity 1 28 0 551 296 55 12 chr4 102621844 102622193 -81666469 + L1ME1 LINE L1 3165 3543 -2603 * 618 251 158 5 chr4 102622182 102622385 -81666277 + L1ME1 LINE L1 4096 4329 -1817 2306 107 0 0 chr4 102622387 102622685 -81665977 + AluSx SINE Alu 3 300 -12 772 175 0 0 chr4 102622685 102622822 -81665840 + AluSq SINE Alu 134 270 -43 378 0 0 0 chr4 102622849 102622891 -81665771 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 315 202 0 0 chr4 102622900 102622984 -81665678 + (TA)n Simple_repeat Simple_repeat 2 85 0 2153 224 130 29 chr4 102622993 102623905 -81664757 + L1ME1 LINE L1 4327 5334 -842 2742 221 56 35 chr4 102623944 102624760 -81663902 + L1ME1 LINE L1 5312 6306 -28 599 304 121 5 chr4 102624800 102625007 -81663655 + MIR SINE MIR 32 262 0 266 284 0 27 chr4 102625068 102625142 -81663520 - L3 LINE CR1 -106 1471 1400 21 0 0 0 chr4 102626400 102626421 -81662241 + AT_rich Low_complexity Low_complexity 1 21 0 955 140 0 0 chr4 102627322 102627465 -81661197 + FLAM_C SINE Alu 1 143 0 25 0 0 0 chr4 102627893 102627918 -81660744 + AT_rich Low_complexity Low_complexity 1 25 0 717 178 0 8 chr4 102627918 102628036 -81660626 - FLAM_C SINE Alu -16 117 1 324 0 0 0 chr4 102628517 102628553 -81660109 + (TG)n Simple_repeat Simple_repeat 2 37 0 870 143 0 0 chr4 102629181 102629314 -81659348 + FLAM_C SINE Alu 1 133 0 809 201 16 48 chr4 102629459 102629648 -81659014 - MLT2D LTR ERVL -3 411 229 240 219 61 24 chr4 102629619 102629701 -81658961 - MLT2D LTR ERVL -108 306 222 * 827 141 15 7 chr4 102630273 102630408 -81658254 - AluJo SINE Alu -176 136 1 2219 87 3 7 chr4 102631031 102631329 -81657333 - L1PA10 LINE L1 -6 6162 5866 244 267 0 47 chr4 102631470 102631556 -81657106 - L1ME LINE L1 -454 5667 5586 329 268 25 96 chr4 102631773 102631971 -81656691 - L1ME LINE L1 -772 5374 5191 1748 142 4 7 chr4 102632446 102632727 -81655935 + AluJb SINE Alu 5 284 -28 426 20 0 0 chr4 102632727 102632778 -81655884 + (CA)n Simple_repeat Simple_repeat 2 52 0 561 168 42 8 chr4 102632804 102632923 -81655739 - LTR37B LTR ERV1 -148 320 198 235 299 26 26 chr4 102633092 102633209 -81655453 - L1ME LINE L1 -2066 4080 3964 1359 62 0 0 chr4 102633226 102633388 -81655274 + AluY SINE Alu 125 286 -25 32 0 0 0 chr4 102633388 102633420 -81655242 + AT_rich Low_complexity Low_complexity 1 32 0 491 246 96 22 chr4 102633420 102633692 -81654970 - L1ME LINE L1 -2193 3953 3662 629 289 114 55 chr4 102633704 102634272 -81654390 - L1ME LINE L1 -2527 3619 3018 207 100 75 0 chr4 102636105 102636145 -81652517 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 22 80 0 0 chr4 102636223 102636273 -81652389 + AT_rich Low_complexity Low_complexity 1 50 0 338 330 82 37 chr4 102636368 102636638 -81652024 - L1ME LINE L1 -3617 2529 2248 4748 270 104 55 chr4 102636701 102637820 -81650842 - L2 LINE L2 -1 3312 2249 2424 70 0 0 chr4 102637820 102638119 -81650543 + AluY SINE Alu 1 299 -12 4748 270 104 55 chr4 102638119 102639317 -81649345 - L2 LINE L2 -1064 2249 881 2076 119 10 0 chr4 102639393 102639695 -81648967 + AluSq SINE Alu 1 305 -8 681 201 182 81 chr4 102639853 102640375 -81648287 - L1MC5 LINE L1 -196 7765 7191 827 141 15 7 chr4 102640580 102640715 -81647947 - AluJo SINE Alu -176 136 1 2219 87 3 7 chr4 102641338 102641636 -81647026 - L1PA10 LINE L1 -6 6162 5866 244 267 0 47 chr4 102641777 102641863 -81646799 - L1ME LINE L1 -454 5667 5586 881 76 8 23 chr4 102642756 102642887 -81645775 + AluY SINE Alu 5 133 -178 691 181 0 8 chr4 102642989 102643116 -81645546 + AluSg/x SINE Alu 185 310 0 23 0 0 0 chr4 102644488 102644511 -81644151 + AT_rich Low_complexity Low_complexity 1 23 0 2357 52 0 0 chr4 102644857 102645143 -81643519 + AluYa8 SINE Alu 1 286 -24 507 193 66 86 chr4 102645455 102645652 -81643010 + MER20B DNA MER1_type 560 752 -31 1925 176 27 83 chr4 102645655 102646139 -81642523 - L1M4 LINE L1 -402 5776 5320 7129 53 9 0 chr4 102646158 102647570 -81641092 - L1PA7 LINE L1 0 6154 4631 199 337 90 0 chr4 102648086 102648175 -81640487 - MIR3 SINE MIR -53 155 59 1911 158 0 10 chr4 102648213 102648517 -81640145 - AluJb SINE Alu -11 301 1 1925 133 77 15 chr4 102648590 102648929 -81639733 + MLT1A1 LTR MaLR 6 365 0 1152 182 66 111 chr4 102649570 102649949 -81638713 + MER57A LTR ERV1 42 403 0 711 265 49 41 chr4 102649952 102650197 -81638465 + MER57A-int LTR ERV1 3 249 -7288 22 0 0 0 chr4 102650239 102650261 -81638401 + AT_rich Low_complexity Low_complexity 1 22 0 2063 132 26 0 chr4 102650273 102650577 -81638085 + AluSx SINE Alu 1 312 0 729 124 9 0 chr4 102650920 102651033 -81637629 + MLT2A2 LTR ERVL 340 453 0 2210 128 0 0 chr4 102651083 102651381 -81637281 + AluSx SINE Alu 3 300 -12 1284 251 86 12 chr4 102651389 102651868 -81636794 - L1M4 LINE L1 -1053 5093 4580 * 5423 201 50 71 chr4 102651865 102654087 -81634575 - L1MC1 LINE L1 -121 6281 4129 2033 130 0 0 chr4 102654087 102654372 -81634290 + AluSx SINE Alu 1 285 -27 5423 201 50 71 chr4 102654372 102654757 -81633905 - L1MC1 LINE L1 -2273 4129 3737 856 318 50 3 chr4 102654732 102655069 -81633593 - L1MC1 LINE L1 -6010 386 34 * 26 64 0 0 chr4 102655669 102655716 -81632946 + AT_rich Low_complexity Low_complexity 1 47 0 327 85 0 0 chr4 102656226 102656273 -81632389 + U5 snRNA snRNA 1 47 -69 358 301 150 6 chr4 102657143 102657316 -81631346 + MIR SINE MIR 57 254 -8 312 244 13 26 chr4 102657406 102657484 -81631178 - L2 LINE L2 -32 3281 3205 834 293 95 64 chr4 102657947 102658571 -81630091 - PABL_B LTR ERV1 0 667 25 226 274 0 0 chr4 102658599 102658650 -81630012 - PABL_B LTR ERV1 -616 51 1 1651 197 0 10 chr4 102658677 102658966 -81629696 + AluSx SINE Alu 3 288 -24 21 0 0 0 chr4 102658970 102658991 -81629671 + AT_rich Low_complexity Low_complexity 1 21 0 2214 122 3 3 chr4 102659044 102659356 -81629306 - AluSx SINE Alu 0 312 1 221 0 35 0 chr4 102660112 102660141 -81628521 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 35595 54 3 1 chr4 102660141 102665478 -81623184 - L1PA5 LINE L1 -16 6138 792 382 212 0 0 chr4 102665578 102665663 -81622999 + L1 LINE L1 3198 3282 -2864 2801 163 20 11 chr4 102665950 102666409 -81622253 - LTR45B LTR ERV1 -2 487 25 1425 121 40 0 chr4 102666409 102666608 -81622054 + AluSc SINE Alu 82 288 -21 241 128 0 0 chr4 102666618 102666657 -81622005 - LTR45B LTR ERV1 -447 42 4 1074 100 7 0 chr4 102668036 102668207 -81620455 - AluSg/x SINE Alu 0 303 132 3081 228 83 31 chr4 102668494 102670138 -81618524 + L1ME2 LINE L1 4399 6139 -25 6146 180 162 41 chr4 102670311 102671722 -81616940 - MER52A LTR ERV1 -174 1581 1 728 57 0 0 chr4 102672413 102672501 -81616161 + THE1C LTR MaLR 288 375 0 1576 182 90 24 chr4 102672878 102673345 -81615317 + Charlie2 DNA MER1_type 1890 2387 -475 197 353 0 15 chr4 102673541 102673609 -81615053 + L2 LINE L2 3202 3268 -4 229 253 12 12 chr4 102674303 102674477 -81614185 + A-rich Low_complexity Low_complexity 1 174 0 191 135 40 14 chr4 102674481 102674555 -81614107 + (CAAA)n Simple_repeat Simple_repeat 3 78 0 35 71 0 0 chr4 102674787 102674857 -81613805 + AT_rich Low_complexity Low_complexity 1 70 0 5276 147 21 3 chr4 102674857 102675875 -81612787 - L1PB4 LINE L1 0 6156 5121 295 79 0 0 chr4 102675875 102675913 -81612749 + FRAM SINE Alu 63 100 -66 775 310 56 22 chr4 102675913 102676214 -81612448 - L1 LINE L1 -1840 4306 4017 186 103 0 0 chr4 102676214 102676243 -81612419 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 775 310 56 22 chr4 102676243 102676570 -81612092 - L1 LINE L1 -2129 4017 3617 3330 193 6 1 chr4 102676706 102677391 -81611271 - L1 LINE L1 -2953 3193 2506 1388 92 5 4 chr4 102677390 102677598 -81611064 + L1P5 LINE L1 5606 5790 -361 * 319 357 123 7 chr4 102677883 102678037 -81610625 + L2 LINE L2 3078 3249 -23 26 0 0 0 chr4 102678248 102678274 -81610388 + AT_rich Low_complexity Low_complexity 1 26 0 2064 129 6 18 chr4 102678308 102678641 -81610021 + L1PA15 LINE L1 5836 6164 -1 21 0 0 0 chr4 102681219 102681240 -81607422 + AT_rich Low_complexity Low_complexity 1 21 0 333 319 37 7 chr4 102681529 102681664 -81606998 - MIR SINE MIR -2 260 122 4598 139 35 1 chr4 102681910 102682651 -81606011 + Tigger1 DNA MER2_type 1400 2165 -253 332 221 51 139 chr4 102682655 102682813 -81605849 + MER21B LTR ERV1 706 849 -14 240 358 53 48 chr4 102682836 102683023 -81605639 + L2 LINE L2 3126 3313 0 22 0 0 0 chr4 102684265 102684287 -81604375 + AT_rich Low_complexity Low_complexity 1 22 0 185 254 0 136 chr4 102684413 102684523 -81604139 + L2 LINE L2 3218 3312 -1 628 219 31 79 chr4 102684612 102684840 -81603822 + MLT1C LTR MaLR 23 239 -228 446 165 21 21 chr4 102684842 102684939 -81603723 + L1PA16 LINE L1 6060 6156 -10 1866 15 0 0 chr4 102685134 102685338 -81603324 + AluY SINE Alu 106 309 -2 525 294 37 37 chr4 102685588 102685775 -81602887 - MIR SINE MIR -1 261 75 240 346 59 29 chr4 102687698 102687834 -81600828 - L2 LINE L2 -234 3079 2940 230 305 0 0 chr4 102687875 102687934 -81600728 - L2 LINE L2 -533 2781 2723 438 150 0 0 chr4 102687934 102688014 -81600648 + L1MA10 LINE L1 6250 6329 -5 286 265 26 40 chr4 102688293 102688444 -81600218 + G-rich Low_complexity Low_complexity 2 150 0 3652 196 92 26 chr4 102688464 102689430 -81599232 + MER52C LTR ERV1 249 1278 0 7996 140 52 4 chr4 102689430 102690767 -81597895 - Tigger1 DNA MER2_type -1017 1401 1 1622 62 5 0 chr4 102691257 102691467 -81597195 + AluYa5 SINE Alu 1 211 -100 28 0 0 0 chr4 102691952 102691980 -81596682 + AT_rich Low_complexity Low_complexity 1 28 0 457 270 0 9 chr4 102692569 102692680 -81595982 - MIR3 SINE MIR -13 195 86 1538 153 3 80 chr4 102693593 102693893 -81594769 + AluJo SINE Alu 1 277 -35 1026 157 70 0 chr4 102695091 102695276 -81593386 - MER52A LTR ERV1 0 1755 1558 524 204 120 30 chr4 102695877 102695995 -81592667 - L1ME3A LINE L1 -2 6168 6029 2496 146 28 23 chr4 102695995 102696427 -81592235 + Tigger2a DNA MER2_type 1 434 0 524 204 120 30 chr4 102696427 102696475 -81592187 - L1ME3A LINE L1 -141 6029 5987 951 273 119 24 chr4 102696528 102697266 -81591396 - L1ME3A LINE L1 -306 5856 5047 910 245 65 21 chr4 102697337 102697676 -81590986 - L1ME3A LINE L1 -1266 4880 4527 346 221 69 12 chr4 102697679 102697885 -81590777 - MLT1G1 LTR MaLR -3 592 336 1024 275 121 10 chr4 102697938 102698614 -81590048 - L1ME3A LINE L1 -2981 3165 2415 21 0 0 0 chr4 102700195 102700216 -81588446 + AT_rich Low_complexity Low_complexity 1 21 0 1680 184 41 46 chr4 102700297 102700689 -81587973 + MLT1B LTR MaLR 1 390 0 21 36 0 0 chr4 102701337 102701365 -81587297 + AT_rich Low_complexity Low_complexity 1 28 0 976 268 84 54 chr4 102701962 102702220 -81586442 - MLT1J2 LTR MaLR -10 440 164 2061 182 5 35 chr4 102702220 102702622 -81586040 - MLT1B LTR MaLR 0 390 1 976 268 84 54 chr4 102702622 102702755 -81585907 - MLT1J2 LTR MaLR -286 164 37 297 333 0 0 chr4 102703444 102703534 -81585128 - MER69A DNA AcHobo -76 101 12 6009 191 102 71 chr4 102704100 102704675 -81583987 - L1MC3 LINE L1 -3 7782 7226 290 256 47 0 chr4 102704675 102704761 -81583901 - MLT1F1 LTR MaLR -443 124 35 6009 191 102 71 chr4 102704761 102705794 -81582868 - L1MC3 LINE L1 -559 7226 6037 471 260 12 95 chr4 102706352 102706520 -81582142 - MIR SINE MIR -35 227 75 244 274 0 0 chr4 102707414 102707476 -81581186 - L1ME2 LINE L1 -109 6055 5994 184 222 56 83 chr4 102707540 102707612 -81581050 + L2 LINE L2 2983 3052 -261 624 189 91 21 chr4 102707669 102707812 -81580850 + MER5A DNA MER1_type 36 188 -1 397 171 12 37 chr4 102707812 102707888 -81580774 + MIR SINE MIR 75 148 -114 557 196 0 0 chr4 102707948 102708050 -81580612 + AluJ/FLAM SINE Alu 1 102 -210 216 0 0 0 chr4 102708255 102708279 -81580383 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 199 386 0 0 chr4 102708365 102708435 -81580227 + MIR SINE MIR 8 77 -185 276 198 62 42 chr4 102708649 102708745 -81579917 - L1ME LINE L1 -5451 1496 1399 1813 141 100 29 chr4 102709758 102710098 -81578564 - THE1B LTR MaLR 0 364 1 1857 115 95 10 chr4 102710866 102711237 -81577425 - LTR7 LTR ERV1 0 450 1 761 271 25 5 chr4 102712049 102712248 -81576414 - MIR SINE MIR -8 254 52 231 88 0 0 chr4 102713002 102713036 -81575626 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1708 181 7 7 chr4 102713244 102713543 -81575119 + AluJb SINE Alu 1 299 -13 747 145 45 8 chr4 102713547 102713801 -81574861 + GA-rich Low_complexity Low_complexity 1 263 0 2131 133 27 16 chr4 102713946 102714315 -81574347 - L1PA15 LINE L1 0 6165 5793 2609 134 14 11 chr4 102714955 102715401 -81573261 - L1MC1 LINE L1 -13 6320 5874 21 0 0 0 chr4 102715939 102715960 -81572702 + AT_rich Low_complexity Low_complexity 1 21 0 3567 122 26 10 chr4 102715990 102716572 -81572090 - L1PA13 LINE L1 -6 6157 5567 768 200 32 7 chr4 102716572 102716727 -81571935 + L1P LINE L1 4939 5097 -1049 751 303 70 35 chr4 102716870 102717681 -81570981 - L1ME LINE L1 -4573 2565 1726 284 269 0 32 chr4 102717777 102717870 -81570792 - L1ME LINE L1 -5453 1406 1317 41139 65 3 1 chr4 102717908 102723956 -81564706 + L1PA5 LINE L1 11 6071 -83 5732 14 1 0 chr4 102724057 102724713 -81563949 + L1PA2 LINE L1 5495 6151 -4 210 91 0 0 chr4 102724717 102724750 -81563912 + (A)n Simple_repeat Simple_repeat 1 33 0 367 232 62 9 chr4 102726128 102726240 -81562422 - Charlie7 DNA MER1_type -1923 689 572 6241 164 46 8 chr4 102726240 102726702 -81561960 - L1MA5 LINE L1 -10 6290 5847 234 0 0 0 chr4 102726702 102726728 -81561934 + (TA)n Simple_repeat Simple_repeat 2 27 0 6241 164 46 8 chr4 102726728 102727015 -81561647 - L1MA5 LINE L1 -453 5847 5573 180 0 0 0 chr4 102727015 102727035 -81561627 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 6241 164 46 8 chr4 102727035 102728356 -81560306 - L1MA5 LINE L1 -727 5573 4147 1429 144 70 14 chr4 102728373 102728658 -81560004 - L1MA4 LINE L1 -22 6278 5978 * 5856 203 40 7 chr4 102728630 102729987 -81558675 - L1MA5 LINE L1 -1984 4162 2761 30 27 0 0 chr4 102730412 102730449 -81558213 + AT_rich Low_complexity Low_complexity 1 37 0 204 205 0 0 chr4 102731235 102731274 -81557388 + (CA)n Simple_repeat Simple_repeat 2 40 0 987 248 62 7 chr4 102731552 102731826 -81556836 + L2 LINE L2 2365 2653 -661 209 250 158 0 chr4 102731824 102731900 -81556762 + L2 LINE L2 3185 3272 0 * 405 254 167 0 chr4 102732401 102732539 -81556123 + Charlie2 DNA MER1_type 170 330 -2532 244 114 0 0 chr4 102732805 102732840 -81555822 + THE1B LTR MaLR 1 35 -329 893 71 0 0 chr4 102732840 102732952 -81555710 + THE1-int LTR MaLR 774 885 -695 1193 63 88 0 chr4 102733649 102733808 -81554854 + AluY SINE Alu 123 295 -16 249 303 42 25 chr4 102736782 102736901 -81551761 + MLT1K LTR MaLR 148 268 -320 410 236 115 87 chr4 102736968 102737176 -81551486 + MLT1K LTR MaLR 366 579 -9 381 279 153 16 chr4 102737711 102737894 -81550768 - L2 LINE L2 -12 3301 3094 821 329 40 38 chr4 102738021 102738447 -81550215 - L2 LINE L2 -491 2823 2397 440 257 161 65 chr4 102741365 102741688 -81546974 - MLT1H LTR MaLR -73 476 123 234 91 0 0 chr4 102742541 102742574 -81546088 + (TG)n Simple_repeat Simple_repeat 1 33 0 554 86 0 12 chr4 102742668 102742749 -81545913 - MADE1 DNA Mariner 0 80 1 433 49 62 0 chr4 102743916 102743997 -81544665 + CT-rich Low_complexity Low_complexity 1 86 0 183 311 40 27 chr4 102744148 102744222 -81544440 + L2 LINE L2 3151 3225 -47 31 0 0 0 chr4 102744441 102744472 -81544190 + AT_rich Low_complexity Low_complexity 1 31 0 33 43 0 0 chr4 102745874 102745921 -81542741 + AT_rich Low_complexity Low_complexity 1 47 0 1918 129 31 0 chr4 102746655 102746942 -81541720 - AluSg SINE Alu -14 296 1 469 303 52 0 chr4 102749020 102749175 -81539487 + MLT1J2 LTR MaLR 270 432 -18 27 29 0 0 chr4 102751900 102751934 -81536728 + AT_rich Low_complexity Low_complexity 1 34 0 1721 148 2 156 chr4 102752611 102753042 -81535620 - MLT1A1 LTR MaLR 0 365 1 307 247 11 22 chr4 102753054 102753143 -81535519 - MIR SINE MIR -3 259 172 344 304 101 19 chr4 102755140 102755298 -81533364 - MIR SINE MIR -26 236 66 40495 33 22 2 chr4 102756377 102762394 -81526268 + L1HS LINE L1 4 6145 -10 295 21 64 0 chr4 102762394 102762441 -81526221 + (TAAAA)n Simple_repeat Simple_repeat 2 51 0 218 195 84 97 chr4 102764902 102765056 -81523606 + L2 LINE L2 3153 3304 -9 370 358 40 14 chr4 102765300 102765448 -81523214 + L2 LINE L2 3119 3270 -2 272 347 135 32 chr4 102766346 102766747 -81521915 + L3 LINE CR1 703 1144 -433 304 373 109 23 chr4 102767021 102767324 -81521338 + L2 LINE L2 2301 2629 -685 208 384 51 78 chr4 102767463 102767913 -81520749 + L2 LINE L2 2832 3269 -3 39827 63 3 1 chr4 102768258 102774394 -81514268 + L1PA4 LINE L1 7 6153 -2 4856 147 37 47 chr4 102774483 102775755 -81512907 - L1MA3 LINE L1 -101 6204 4916 195 351 0 26 chr4 102776122 102776199 -81512463 + L2 LINE L2 3231 3305 -8 256 312 65 78 chr4 102776234 102776388 -81512274 - L2 LINE L2 0 3272 3121 376 253 167 17 chr4 102776642 102776942 -81511720 - L1ME2 LINE L1 -174 5990 5646 300 154 0 0 chr4 102777524 102777576 -81511086 + (TA)n Simple_repeat Simple_repeat 1 52 0 484 293 121 30 chr4 102777694 102778025 -81510637 - MLT1J1 LTR MaLR -58 388 28 601 117 97 0 chr4 102778154 102778257 -81510405 + MER85 DNA T2_type 1 113 -26 360 64 0 0 chr4 102778680 102778732 -81509930 + (TG)n Simple_repeat Simple_repeat 1 99 0 360 64 0 0 chr4 102778732 102778779 -81509883 + (TG)n Simple_repeat Simple_repeat 2 48 0 499 201 12 95 chr4 102779199 102779368 -81509294 - L1MA10 LINE L1 -8 6326 6172 2234 234 93 18 chr4 102779375 102780049 -81508613 - L1ME1 LINE L1 -270 5896 5274 1371 53 0 0 chr4 102780049 102780253 -81508409 + L1PA3 LINE L1 5976 6179 0 2234 234 93 18 chr4 102780253 102780913 -81507749 - L1ME1 LINE L1 -892 5274 4459 1658 273 32 14 chr4 102780988 102781617 -81507045 - L1ME1 LINE L1 -1810 4336 3697 234 357 91 0 chr4 102781677 102781820 -81506842 + MIR SINE MIR 90 245 -17 2208 156 17 15 chr4 102781951 102782362 -81506300 - L1PB4 LINE L1 0 6156 5745 1211 115 0 0 chr4 102782363 102782545 -81506117 + L1P5 LINE L1 5516 5697 -459 541 302 76 54 chr4 102783010 102783587 -81505075 + MLT1L LTR MaLR 8 597 -18 2674 71 0 3 chr4 102783740 102784091 -81504571 - L1PB1 LINE L1 -1 6150 5801 2236 80 28 0 chr4 102784142 102784430 -81504232 + AluY SINE Alu 1 296 -15 208 219 0 0 chr4 102784665 102784706 -81503956 + (CA)n Simple_repeat Simple_repeat 2 42 0 2073 136 7 3 chr4 102784741 102785051 -81503611 - AluSx SINE Alu -1 311 1 371 245 109 20 chr4 102786862 102787009 -81501653 + L2 LINE L2 3154 3313 0 1259 340 53 35 chr4 102787292 102788170 -81500492 + HERV16 LTR ERVL 4032 4925 -729 361 188 62 54 chr4 102788227 102788339 -81500323 + HERV16 LTR ERVL 4555 4667 -329 519 298 87 30 chr4 102788761 102789060 -81499602 + LTR16A LTR ERVL 83 398 -52 394 309 36 96 chr4 102789060 102789361 -81499301 - L2 LINE L2 -465 2849 2567 2211 96 0 3 chr4 102789923 102790234 -81498428 + AluSg SINE Alu 1 310 0 2295 94 0 10 chr4 102790336 102790644 -81498018 - AluY SINE Alu -6 305 1 1769 156 28 0 chr4 102790726 102791015 -81497647 - AluSx SINE Alu -15 297 1 21 0 0 0 chr4 102791807 102791828 -81496834 + AT_rich Low_complexity Low_complexity 1 21 0 188 67 33 0 chr4 102792415 102792445 -81496217 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 323 376 31 12 chr4 102792531 102792693 -81495969 + MIR SINE MIR 5 169 -93 1648 92 169 0 chr4 102793113 102793374 -81495288 + AluSq SINE Alu 1 305 -8 1442 92 4 18 chr4 102793467 102793694 -81494968 + MSTA-int LTR MaLR 1357 1580 0 2058 127 130 23 chr4 102793694 102794079 -81494583 + MSTA LTR MaLR 1 426 -2 13939 24 0 1 chr4 102794572 102796304 -81492358 - L1P LINE L1 -1490 4656 2926 4395 32 0 0 chr4 102796297 102796857 -81491805 + L1P LINE L1 4660 5219 -927 * 2313 96 141 172 chr4 102796957 102797962 -81490700 + pTR5 LTR ERV1 1150 2437 -1 1855 169 41 17 chr4 102797962 102798395 -81490267 - MLT2A2 LTR ERVL -100 454 1 561 187 116 157 chr4 102798415 102798532 -81490130 + L1ME LINE L1 5488 5608 -558 521 258 0 23 chr4 102798532 102798660 -81490002 + FLAM_A SINE Alu 1 125 -8 561 187 116 157 chr4 102798660 102798879 -81489783 + L1ME LINE L1 5608 5810 -356 341 253 0 0 chr4 102798880 102798963 -81489699 - L1M4 LINE L1 -1792 4354 4272 584 256 34 49 chr4 102799010 102799090 -81489572 + L1MA10 LINE L1 5867 5947 -387 2243 101 3 0 chr4 102799090 102799387 -81489275 + AluSp SINE Alu 1 298 -15 584 256 34 49 chr4 102799387 102799624 -81489038 + L1MA10 LINE L1 5947 6328 -6 2420 29 0 0 chr4 102800941 102801218 -81487444 + AluYb8 SINE Alu 41 317 -1 194 0 0 37 chr4 102801222 102801249 -81487413 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 12243 185 22 32 chr4 102801359 102805159 -81483503 + L1PA16 LINE L1 1308 5105 -1692 2222 122 0 10 chr4 102805159 102805470 -81483192 + AluSx SINE Alu 1 308 -4 12243 185 22 32 chr4 102805470 102805804 -81482858 + L1PA16 LINE L1 5105 5441 -1356 436 188 23 23 chr4 102805808 102805941 -81482721 + L1PA13 LINE L1 4345 4477 -1669 5528 124 22 8 chr4 102805979 102807318 -81481344 + L1PA13 LINE L1 4809 6163 0 301 277 85 11 chr4 102807350 102807444 -81481218 - MER63A DNA MER1_type 0 210 110 359 217 9 0 chr4 102807495 102807601 -81481061 + (TCCA)n Simple_repeat Simple_repeat 1 107 0 286 244 47 12 chr4 102807679 102807765 -81480897 - MER63A DNA MER1_type 0 89 1 25 0 0 0 chr4 102809102 102809127 -81479535 + AT_rich Low_complexity Low_complexity 1 25 0 3411 173 2 5 chr4 102809748 102810372 -81478290 + L1PA16 LINE L1 6190 6811 -6 396 320 78 27 chr4 102810696 102810915 -81477747 + MIR SINE MIR 12 241 -21 35 24 0 0 chr4 102811278 102811320 -81477342 + AT_rich Low_complexity Low_complexity 1 42 0 512 283 136 27 chr4 102812497 102812681 -81475981 + MIR SINE MIR 58 261 -1 238 242 143 0 chr4 102812740 102812831 -81475831 - HAL1b LINE L1 -58 1290 1187 687 207 94 55 chr4 102812888 102813163 -81475499 + Charlie1 DNA MER1_type 185 470 -2291 291 194 15 0 chr4 102813194 102813261 -81475401 + Charlie1 DNA MER1_type 2688 2755 -6 2116 94 13 30 chr4 102813348 102813646 -81475016 + AluY SINE Alu 1 293 -18 189 0 0 0 chr4 102813646 102813667 -81474995 + (TA)n Simple_repeat Simple_repeat 2 22 0 258 216 0 0 chr4 102814262 102814313 -81474349 + Charlie4 DNA MER1_type 1 51 -1910 781 234 43 30 chr4 102814556 102814791 -81473871 + MSTD LTR MaLR 1 238 -158 986 148 36 46 chr4 102814810 102814841 -81473821 + MSTD LTR MaLR 204 234 -162 2118 114 3 7 chr4 102814841 102815131 -81473531 - AluSx SINE Alu -23 289 1 986 148 36 46 chr4 102815131 102815328 -81473334 + MSTD LTR MaLR 234 396 0 468 288 103 47 chr4 102815981 102816300 -81472362 - MLT1J LTR MaLR -31 480 144 1769 254 33 25 chr4 102816305 102816817 -81471845 + MLT1E2 LTR MaLR 2 517 -109 1958 133 37 37 chr4 102817236 102817611 -81471051 - THE1C LTR MaLR 0 375 1 1790 166 47 9 chr4 102817637 102817981 -81470681 - THE1B LTR MaLR -7 357 1 589 306 32 27 chr4 102817982 102818201 -81470461 + MIR SINE MIR 19 238 -24 2106 126 3 3 chr4 102821632 102821933 -81466729 + AluSx SINE Alu 1 301 -11 234 0 0 0 chr4 102821933 102821959 -81466703 + (TA)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr4 102822149 102822170 -81466492 + AT_rich Low_complexity Low_complexity 1 21 0 3577 264 138 25 chr4 102822323 102823515 -81465147 - L2 LINE L2 -80 3233 2177 2735 7 0 0 chr4 102823515 102823812 -81464850 + AluYa5 SINE Alu 1 297 -14 2842 6 0 3 chr4 102823812 102824123 -81464539 + AluY SINE Alu 1 311 0 3577 264 138 25 chr4 102824123 102824432 -81464230 - L2 LINE L2 -1135 2178 1561 240 209 85 85 chr4 102824435 102824564 -81464098 - L2 LINE L2 -2996 318 190 975 197 10 5 chr4 102827345 102827543 -81461119 - MLT1B LTR MaLR 0 390 192 2108 182 141 31 chr4 102827562 102827783 -81460879 - MER44D DNA MER2_type -1886 601 406 2086 124 53 34 chr4 102827783 102828139 -81460523 - THE1B LTR MaLR -1 363 1 2108 182 141 31 chr4 102828139 102828407 -81460255 - MER44D DNA MER2_type -2081 406 3 784 204 0 17 chr4 102828412 102828588 -81460074 - MLT1B LTR MaLR -217 173 1 338 308 171 12 chr4 102829123 102829363 -81459299 + L2 LINE L2 2105 2382 -932 350 239 142 39 chr4 102829396 102829489 -81459173 + MIR SINE MIR 36 118 -144 189 74 0 0 chr4 102829489 102829516 -81459146 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 350 239 142 39 chr4 102829516 102829577 -81459085 + MIR SINE MIR 118 206 -56 7542 159 5 1 chr4 102829621 102830850 -81457812 + L1PA14 LINE L1 1 1234 -6347 242 160 80 0 chr4 102830850 102830900 -81457762 - LTR3b LTR ERVK 0 500 447 1749 151 18 39 chr4 102830900 102831011 -81457651 - LTR3b LTR ERVK -17 483 371 20641 38 3 0 chr4 102831011 102834324 -81454338 - L1PA5 LINE L1 -6 6148 2829 1749 151 18 39 chr4 102834324 102834544 -81454118 - LTR3b LTR ERVK -129 371 159 11383 132 16 14 chr4 102834554 102836466 -81452196 + L1PA14 LINE L1 1227 3147 -4437 9741 172 8 44 chr4 102836469 102839802 -81448860 + L1PA14 LINE L1 4171 7590 -9 236 351 0 0 chr4 102839812 102839889 -81448773 + GA-rich Low_complexity Low_complexity 5 81 0 25 31 0 0 chr4 102841320 102841352 -81447310 + AT_rich Low_complexity Low_complexity 1 32 0 197 109 73 0 chr4 102841695 102841750 -81446912 + (TA)n Simple_repeat Simple_repeat 2 60 0 * 357 131 0 0 chr4 102841737 102841798 -81446864 + (CA)n Simple_repeat Simple_repeat 2 62 0 1006 206 44 110 chr4 102841800 102841896 -81446766 + MER2 DNA MER2_type 1 102 -243 611 212 17 0 chr4 102841896 102842014 -81446648 + FLAM_A SINE Alu 1 120 -13 1006 206 44 110 chr4 102842014 102842282 -81446380 + MER2 DNA MER2_type 102 341 -4 23 0 0 0 chr4 102842399 102842422 -81446240 + AT_rich Low_complexity Low_complexity 1 23 0 409 316 15 15 chr4 102842756 102842889 -81445773 - L2 LINE L2 -6 3307 3175 916 196 90 46 chr4 102843101 102843461 -81445201 - MSTC LTR MaLR 0 428 1 896 253 76 3 chr4 102843675 102843976 -81444686 + MER5C DNA MER1_type 2 324 0 337 239 171 17 chr4 102844009 102844126 -81444536 - L2 LINE L2 -14 3299 3165 2026 123 7 7 chr4 102844172 102844489 -81444173 + AluSc SINE Alu 1 309 0 25 0 0 0 chr4 102844860 102844885 -81443777 + AT_rich Low_complexity Low_complexity 1 25 0 23 54 0 0 chr4 102845053 102845090 -81443572 + AT_rich Low_complexity Low_complexity 1 37 0 235 275 28 0 chr4 102845897 102846041 -81442621 + MIR SINE MIR 152 262 0 279 260 203 32 chr4 102846085 102846208 -81442454 - MIR3 SINE MIR -63 145 2 244 196 0 22 chr4 102846545 102846591 -81442071 - L2 LINE L2 -4 3309 3265 2098 96 36 0 chr4 102847469 102847750 -81440912 + AluSx SINE Alu 1 291 -21 243 0 0 0 chr4 102847753 102847780 -81440882 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 760 305 61 58 chr4 102848063 102848642 -81440020 + L2 LINE L2 2738 3313 0 2384 79 0 7 chr4 102849074 102849377 -81439285 - AluY SINE Alu -10 301 1 249 33 0 0 chr4 102849409 102849439 -81439223 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 960 296 35 48 chr4 102849527 102850193 -81438469 - L2 LINE L2 -86 3227 2536 326 390 0 13 chr4 102850238 102850392 -81438270 + MIR SINE MIR 1 152 -110 21964 103 12 42 chr4 102850406 102853050 -81435612 + L1PA7 LINE L1 3 2725 -3429 200 31 62 0 chr4 102853050 102853082 -81435580 + A-rich Low_complexity Low_complexity 2 35 0 21964 103 12 42 chr4 102853082 102856885 -81431777 + L1PA7 LINE L1 2725 6151 -3 867 263 56 59 chr4 102856946 102857337 -81431325 - MLT1J2 LTR MaLR -59 391 2 1356 245 50 12 chr4 102857539 102857963 -81430699 - L1MB8 LINE L1 -30 6148 5709 369 172 30 15 chr4 102859394 102859528 -81429134 + CT-rich Low_complexity Low_complexity 1 136 0 1003 157 81 20 chr4 102861623 102861821 -81426841 + MSTD LTR MaLR 187 396 0 556 291 90 54 chr4 102861990 102862524 -81426138 - L1ME2 LINE L1 -283 5881 5317 2318 91 0 16 chr4 102862883 102863191 -81425471 - AluSq SINE Alu -10 303 1 416 263 251 21 chr4 102863322 102863740 -81424922 - L1ME2 LINE L1 -818 5328 4815 682 318 54 20 chr4 102863895 102864484 -81424178 - L1ME2 LINE L1 -1430 4716 4108 944 297 77 84 chr4 102864529 102865783 -81422879 - L1ME2 LINE L1 -2163 3983 2739 1520 196 16 32 chr4 102865821 102866137 -81422525 - AluJb SINE Alu -1 311 1 219 163 0 23 chr4 102866203 102866246 -81422416 + (TG)n Simple_repeat Simple_repeat 1 42 0 338 218 35 23 chr4 102866246 102866333 -81422329 - L1MC4 LINE L1 -1340 6702 6615 190 293 52 26 chr4 102866465 102866581 -81422081 - L2 LINE L2 -5 3308 3190 534 257 146 0 chr4 102866637 102866808 -81421854 - MIR SINE MIR 0 262 67 311 281 237 0 chr4 102868471 102868585 -81420077 + MIR SINE MIR 48 188 -74 396 236 34 0 chr4 102869948 102870037 -81418625 - MER94 DNA DNA -42 92 1 565 248 43 151 chr4 102870037 102870125 -81418537 - MIR SINE MIR -14 248 152 1472 199 7 18 chr4 102870125 102870406 -81418256 + AluJo SINE Alu 4 281 -31 565 248 43 151 chr4 102870406 102870595 -81418067 - MIR SINE MIR -110 152 1 3084 164 37 2 chr4 102871715 102872258 -81416404 - MER68 LTR ERV1 0 562 1 917 188 35 5 chr4 102872530 102872732 -81415930 + MER3 DNA MER1_type 2 209 0 226 303 81 10 chr4 102874062 102874161 -81414501 + MER103 DNA DNA 15 120 -46 1902 132 54 48 chr4 102874530 102874902 -81413760 + THE1C LTR MaLR 2 375 0 9951 124 35 7 chr4 102874902 102876438 -81412224 + THE1C-int LTR MaLR 1 1580 0 1797 121 95 17 chr4 102876438 102876786 -81411876 + THE1C LTR MaLR 1 375 0 678 276 83 101 chr4 102876901 102877347 -81411315 + MLT1J1 LTR MaLR 1 438 -8 24 77 0 0 chr4 102877394 102877446 -81411216 + AT_rich Low_complexity Low_complexity 1 52 0 205 283 79 56 chr4 102877486 102877604 -81411058 + MIR SINE MIR 7 124 -92 3124 244 28 15 chr4 102877733 102878784 -81409878 + L1MD2 LINE L1 2721 3784 -2362 1623 165 53 23 chr4 102878784 102879142 -81409520 + AluJb SINE Alu 1 367 0 811 138 11 23 chr4 102879142 102879316 -81409346 + GA-rich Low_complexity Low_complexity 3 174 0 1508 214 87 22 chr4 102879316 102879765 -81408897 + L1MD2 LINE L1 3776 4253 -1893 373 285 71 37 chr4 102879765 102880023 -81408639 + MER109 Unknown Unknown 62 653 -1779 2643 171 31 74 chr4 102880142 102880845 -81407817 + MER109 Unknown Unknown 663 1335 -1097 529 251 70 53 chr4 102880846 102881145 -81407517 - MER109 Unknown Unknown -1111 1321 1018 228 216 0 0 chr4 102881283 102881334 -81407328 + (TA)n Simple_repeat Simple_repeat 2 52 0 644 168 0 9 chr4 102881334 102881447 -81407215 - AluSq/x SINE Alu -179 134 23 31 26 0 0 chr4 102881848 102881886 -81406776 + AT_rich Low_complexity Low_complexity 1 38 0 4689 197 46 61 chr4 102881906 102883332 -81405330 + L1MD2 LINE L1 4266 5667 -692 1966 103 3 75 chr4 102883332 102883653 -81405009 + AluSc SINE Alu 2 299 -10 4689 197 46 61 chr4 102883653 102884310 -81404352 + L1MD2 LINE L1 5667 6332 -27 2100 112 7 36 chr4 102884316 102884621 -81404041 - AluSq SINE Alu -17 296 1 363 306 0 0 chr4 102884715 102884800 -81403862 + MER81 DNA DNA 1 85 -29 2899 201 18 60 chr4 102884800 102885001 -81403661 + L1 LINE L1 4226 4434 -1712 2041 131 0 3 chr4 102885001 102885284 -81403378 + AluSx SINE Alu 1 282 -30 2899 201 18 60 chr4 102885284 102885881 -81402781 + L1 LINE L1 4434 4990 -1156 226 204 41 0 chr4 102885984 102886033 -81402629 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 206 292 62 0 chr4 102886034 102886099 -81402563 + L2 LINE L2 3143 3211 -61 409 321 80 6 chr4 102886977 102887139 -81401523 + MIR SINE MIR 57 230 -32 204 40 0 0 chr4 102887700 102887725 -81400937 + (GA)n Simple_repeat Simple_repeat 2 26 0 198 359 0 109 chr4 102888746 102888966 -81399696 + L2 LINE L2 2859 3054 -218 2174 113 0 0 chr4 102889199 102889490 -81399172 + AluSg SINE Alu 1 291 -19 331 327 0 9 chr4 102890366 102890476 -81398186 + (TGG)n Simple_repeat Simple_repeat 1 109 0 518 289 6 28 chr4 102890513 102890744 -81397918 + (TGG)n Simple_repeat Simple_repeat 1 225 0 774 206 10 70 chr4 102894642 102894841 -81393821 + MER5A DNA MER1_type 3 189 0 344 300 71 0 chr4 102895634 102895774 -81392888 + MIR SINE MIR 57 206 -56 526 333 11 11 chr4 102897248 102897422 -81391240 + MIR3 SINE MIR 13 186 -22 328 273 36 12 chr4 102898465 102898630 -81390032 + (TCTCTG)n Simple_repeat Simple_repeat 2 170 0 1288 191 36 24 chr4 102898687 102898938 -81389724 - AluJo SINE Alu -13 299 46 329 306 66 71 chr4 102899250 102899433 -81389229 + MIR SINE MIR 24 205 -57 1267 145 37 14 chr4 102899502 102899716 -81388946 + MER20 DNA MER1_type 1 219 0 395 292 93 81 chr4 102899984 102900381 -81388281 - L2 LINE L2 0 3313 2912 1284 228 32 56 chr4 102900713 102901051 -81387611 + MLT1C LTR MaLR 94 423 -44 1291 119 0 0 chr4 102901061 102901246 -81387416 + AluSg/x SINE Alu 117 301 -8 1221 210 60 105 chr4 102901256 102901723 -81386939 - MLT1D LTR MaLR -54 451 6 312 313 66 30 chr4 102902438 102902636 -81386026 + L1M4 LINE L1 1408 1612 -4930 1504 181 50 31 chr4 102902672 102902992 -81385670 - MLT1A1 LTR MaLR -7 358 33 1777 151 7 0 chr4 102902995 102903274 -81385388 - AluSx SINE Alu -20 292 12 846 281 47 54 chr4 102903899 102904216 -81384446 - L2 LINE L2 -397 2917 2603 1815 261 137 82 chr4 102905898 102905936 -81382726 + L2 LINE L2 1869 1903 -1410 1921 131 17 140 chr4 102905936 102906330 -81382332 + MLT2D LTR ERVL 1 329 -85 273 98 0 0 chr4 102906330 102906371 -81382291 + (TG)n Simple_repeat Simple_repeat 1 41 0 1921 131 17 140 chr4 102906371 102906448 -81382214 + MLT2D LTR ERVL 329 414 0 1815 261 137 82 chr4 102906448 102906740 -81381922 + L2 LINE L2 1903 2177 -1136 568 77 13 0 chr4 102906740 102906818 -81381844 + MADE1 DNA Mariner 2 80 0 1815 261 137 82 chr4 102906818 102907083 -81381579 + L2 LINE L2 2177 2426 -887 1985 125 3 52 chr4 102907083 102907411 -81381251 + AluSx SINE Alu 1 312 0 216 0 0 0 chr4 102907413 102907437 -81381225 + (TA)n Simple_repeat Simple_repeat 2 25 0 1815 261 137 82 chr4 102907437 102908175 -81380487 + L2 LINE L2 2426 3282 -31 24 32 0 0 chr4 102908182 102908213 -81380449 + AT_rich Low_complexity Low_complexity 1 31 0 435 154 19 96 chr4 102909687 102909791 -81378871 + MER21B LTR ERV1 12 107 -756 2538 198 61 62 chr4 102909873 102910679 -81377983 + MER21B LTR ERV1 22 862 -1 2082 94 93 11 chr4 102911655 102912020 -81376642 + LTR7 LTR ERV1 1 448 -2 4887 91 37 0 chr4 102912406 102913102 -81375560 - LTR30 LTR ERV1 0 722 1 188 214 0 0 chr4 102913181 102913223 -81375439 + L3 LINE CR1 1334 1375 -202 315 0 0 0 chr4 102913744 102913779 -81374883 + (TG)n Simple_repeat Simple_repeat 2 36 0 42437 51 5 0 chr4 102913907 102920033 -81368629 + L1PA4 LINE L1 2 6155 0 31 44 0 0 chr4 102920176 102920221 -81368441 + AT_rich Low_complexity Low_complexity 1 45 0 185 337 11 11 chr4 102921297 102921392 -81367270 + L2 LINE L2 2772 2866 -448 2560 223 119 43 chr4 102921739 102922663 -81365999 + L1MC4a LINE L1 6815 7808 0 1073 261 4 0 chr4 102922769 102922999 -81365663 + MIR SINE MIR 32 262 0 326 218 0 0 chr4 102923246 102923301 -81365361 - AluJ/monomer SINE Alu -246 55 1 2178 200 42 0 chr4 102923307 102923812 -81364850 - L1M4c LINE L1 -4929 1455 930 240 345 42 0 chr4 102923814 102923933 -81364729 - Tigger8 DNA MER2_type -528 138 15 22 0 0 0 chr4 102924661 102924683 -81363979 + AT_rich Low_complexity Low_complexity 1 22 0 1915 220 78 31 chr4 102924752 102925238 -81363424 + L1M4c LINE L1 18 526 -5858 1245 199 21 7 chr4 102925201 102925492 -81363170 - L1M4c LINE L1 -5080 1304 1010 * 8388 155 36 28 chr4 102925499 102926405 -81362257 + L1M4c LINE L1 533 1463 -4921 2008 140 3 0 chr4 102926405 102926691 -81361971 + AluSx SINE Alu 1 287 -25 8388 155 36 28 chr4 102926691 102927518 -81361144 + L1M4c LINE L1 1463 2281 -4103 2763 161 14 16 chr4 102927525 102928036 -81360626 + L1MB2 LINE L1 5662 6171 0 23 78 0 0 chr4 102928202 102928253 -81360409 + AT_rich Low_complexity Low_complexity 1 51 0 262 246 0 18 chr4 102929238 102929295 -81359367 - L2 LINE L2 0 3272 3217 290 200 168 42 chr4 102929947 102930042 -81358620 - MER117 DNA MER1_type -72 125 19 269 373 84 7 chr4 102931040 102931182 -81357480 - MIR3 SINE MIR -17 191 39 258 336 8 46 chr4 102932429 102932560 -81356102 + MIR SINE MIR 1 126 -136 1032 173 123 75 chr4 102932800 102932976 -81355686 + THE1C LTR MaLR 1 167 -208 276 30 0 0 chr4 102932976 102933009 -81355653 + (TC)n Simple_repeat Simple_repeat 1 33 0 1032 173 123 75 chr4 102933009 102933190 -81355472 + THE1C LTR MaLR 167 375 0 641 349 86 35 chr4 102933319 102933882 -81354780 + L2 LINE L2 2701 3296 -17 184 209 0 47 chr4 102933849 102933892 -81354770 + MIR SINE MIR 219 259 -3 * 264 124 38 143 chr4 102934160 102934265 -81354397 - MLT1F LTR MaLR 0 542 449 294 233 144 41 chr4 102934444 102934590 -81354072 - MLT1H LTR MaLR -386 163 3 509 99 12 0 chr4 102935034 102935115 -81353547 + L1PA16 LINE L1 6075 6156 -10 377 319 48 31 chr4 102935496 102935725 -81352937 + MLT1L LTR MaLR 350 582 -33 569 320 100 12 chr4 102935868 102936127 -81352535 + LTR33 LTR ERVL 1 282 -239 1112 198 37 29 chr4 102936201 102936444 -81352218 - MER52A LTR ERV1 0 1755 1511 * 6059 176 31 68 chr4 102936433 102937717 -81350945 + MER52A LTR ERV1 520 1755 0 633 248 7 0 chr4 102937719 102937856 -81350806 + LTR33 LTR ERVL 377 514 -7 259 312 208 7 chr4 102937914 102938068 -81350594 + MIR SINE MIR 72 256 -6 2342 93 0 7 chr4 102938175 102938476 -81350186 - AluSq SINE Alu -14 299 1 310 303 30 10 chr4 102938511 102938610 -81350052 - MER117 DNA MER1_type -22 175 75 496 344 44 9 chr4 102939554 102939781 -81348881 - MIR SINE MIR -10 252 18 2151 102 0 36 chr4 102939791 102940095 -81348567 + AluSx SINE Alu 1 293 -19 320 338 76 38 chr4 102940305 102940462 -81348200 - L2 LINE L2 -1 3271 3109 2790 191 9 17 chr4 102940650 102941230 -81347432 - L1MB7 LINE L1 -10 6174 5600 4449 141 9 21 chr4 102941244 102942055 -81346607 - L1MA4 LINE L1 -2 6298 5498 1235 136 34 0 chr4 102942055 102942339 -81346323 + L1MA4 LINE L1 5195 5485 -745 1562 205 39 25 chr4 102942346 102942673 -81345989 - L1MB7 LINE L1 -581 5603 5282 1485 164 164 0 chr4 102942673 102942971 -81345691 - MER7A DNA MER2_type -1 345 1 1562 205 39 25 chr4 102942971 102943281 -81345381 - L1MB7 LINE L1 -902 5282 4961 684 201 35 23 chr4 102943510 102943684 -81344978 - L1MB7 LINE L1 -1194 4952 4777 452 357 101 31 chr4 102943915 102944330 -81344332 - L2 LINE L2 -527 2787 2344 230 315 56 73 chr4 102944345 102944523 -81344139 - MIR SINE MIR -21 241 67 28 29 0 0 chr4 102945251 102945286 -81343376 + AT_rich Low_complexity Low_complexity 1 35 0 2051 134 0 0 chr4 102945399 102945689 -81342973 - AluSg SINE Alu -20 290 1 1802 131 55 7 chr4 102945983 102946258 -81342404 + AluSg SINE Alu 1 288 -22 532 160 0 46 chr4 102946274 102946405 -81342257 + (TG)n Simple_repeat Simple_repeat 2 126 0 565 275 46 61 chr4 102947224 102947455 -81341207 + MIR SINE MIR 5 233 -29 2011 143 3 0 chr4 102947455 102947749 -81340913 + AluSx SINE Alu 1 295 -17 565 275 46 61 chr4 102947749 102947779 -81340883 + MIR SINE MIR 233 262 0 363 251 204 6 chr4 102948205 102948372 -81340290 + MIR SINE MIR 57 256 -6 231 36 0 0 chr4 102948870 102948898 -81339764 + (CA)n Simple_repeat Simple_repeat 2 29 0 201 39 0 0 chr4 102950132 102950158 -81338504 + (CA)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr4 102950165 102950187 -81338475 + AT_rich Low_complexity Low_complexity 1 22 0 283 349 0 0 chr4 102950465 102950574 -81338088 + L1 LINE L1 3589 3697 -2449 186 258 0 0 chr4 102951642 102951704 -81336958 + (TATG)n Simple_repeat Simple_repeat 2 63 0 187 68 0 91 chr4 102951961 102952005 -81336657 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 242 341 10 9 chr4 102952131 102952258 -81336404 + CT-rich Low_complexity Low_complexity 2 211 0 259 133 40 27 chr4 102955592 102955667 -81332995 + (TAA)n Simple_repeat Simple_repeat 1 76 0 439 298 88 12 chr4 102955859 102956030 -81332632 + MER5A DNA MER1_type 6 189 0 191 330 39 48 chr4 102956160 102956263 -81332399 - L2 LINE L2 -73 3199 3098 299 127 0 18 chr4 102956618 102956673 -81331989 + (TG)n Simple_repeat Simple_repeat 1 54 0 282 323 98 6 chr4 102958892 102959056 -81329606 + MIR SINE MIR 72 250 -12 419 247 182 52 chr4 102959147 102959378 -81329284 + MIR SINE MIR 2 262 0 543 281 11 45 chr4 102959551 102959729 -81328933 + MIR3 SINE MIR 1 172 -36 259 139 0 0 chr4 102960775 102960811 -81327851 - tRNA-Arg-AGG tRNA tRNA -40 36 1 364 266 21 0 chr4 102961356 102961450 -81327212 + L2 LINE L2 3177 3272 0 292 250 296 9 chr4 102961447 102961555 -81327107 - MER5A DNA MER1_type -30 159 21 * 1894 187 141 5 chr4 102961617 102962028 -81326634 - MLT1C LTR MaLR 0 467 1 29 28 0 0 chr4 102962177 102962213 -81326449 + AT_rich Low_complexity Low_complexity 1 36 0 194 374 136 34 chr4 102962535 102962682 -81325980 - L2 LINE L2 -4 3268 3107 253 198 25 0 chr4 102962783 102962864 -81325798 + CT-rich Low_complexity Low_complexity 2 84 0 413 307 8 0 chr4 102963004 102963131 -81325531 + MIR SINE MIR 102 229 -33 2161 221 26 65 chr4 102964474 102965176 -81323486 + L1ME3A LINE L1 5497 6170 0 196 326 178 7 chr4 102965204 102965339 -81323323 + MIR SINE MIR 61 218 -44 1730 163 40 0 chr4 102966284 102966610 -81322052 + MER44D DNA MER2_type 1 609 0 1520 186 35 11 chr4 102966938 102967260 -81321402 - MER61B LTR ERV1 -1 424 1 429 291 113 73 chr4 102967276 102967854 -81320808 - L1ME LINE L1 -265 5856 5255 321 317 85 58 chr4 102967974 102968337 -81320325 - L1ME LINE L1 -1166 4980 4608 339 25 0 0 chr4 102968338 102968378 -81320284 + (TG)n Simple_repeat Simple_repeat 1 40 0 1890 153 76 13 chr4 102969292 102969865 -81318797 + MER39 LTR ERV1 1 706 -1 24 0 0 0 chr4 102970267 102970291 -81318371 + AT_rich Low_complexity Low_complexity 1 24 0 741 122 0 16 chr4 102972549 102972672 -81315990 - FRAM SINE Alu -6 170 50 33 25 0 0 chr4 102973275 102973315 -81315347 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr4 102973524 102973547 -81315115 + AT_rich Low_complexity Low_complexity 1 23 0 2095 141 98 18 chr4 102975355 102975751 -81312911 + MSTA LTR MaLR 1 428 0 210 271 68 0 chr4 102976095 102976154 -81312508 - MIR SINE MIR -61 147 85 21 36 0 0 chr4 102976280 102976308 -81312354 + AT_rich Low_complexity Low_complexity 1 28 0 59 27 0 0 chr4 102976662 102976735 -81311927 + AT_rich Low_complexity Low_complexity 1 73 0 635 206 44 31 chr4 102977472 102977632 -81311030 - MIR SINE MIR -1 261 100 210 311 93 50 chr4 102977643 102977804 -81310858 - MIR SINE MIR -34 228 61 * 1354 271 302 13 chr4 102977750 102978633 -81310029 - L2 LINE L2 -297 3016 1787 729 222 54 5 chr4 102979266 102979487 -81309175 + L1 LINE L1 3268 3499 -2647 921 199 11 0 chr4 102979493 102979669 -81308993 + AluYa8 SINE Alu 121 298 -12 8033 189 33 20 chr4 102979669 102982292 -81306370 + L1PA16 LINE L1 3518 6166 0 2382 111 26 3 chr4 102982946 102983298 -81305364 - THE1B LTR MaLR -4 360 1 10188 98 19 62 chr4 102983298 102984949 -81303713 - THE1B-int LTR MaLR 0 1580 1 2655 112 0 3 chr4 102984949 102985314 -81303348 - THE1B LTR MaLR 0 364 1 268 262 221 20 chr4 102985971 102986120 -81302542 + MIR SINE MIR 36 214 -48 26 0 0 0 chr4 102986207 102986233 -81302429 + AT_rich Low_complexity Low_complexity 1 26 0 1793 148 29 29 chr4 102986233 102986543 -81302119 + AluJb SINE Alu 1 310 -2 964 262 140 17 chr4 102987444 102987986 -81300676 + L2 LINE L2 2627 3218 -95 1922 106 51 17 chr4 102988015 102988307 -81300355 + AluSx SINE Alu 7 308 -4 320 219 8 0 chr4 102989854 102989977 -81298685 + (TA)n Simple_repeat Simple_repeat 1 124 0 22 0 0 0 chr4 102990370 102990392 -81298270 + AT_rich Low_complexity Low_complexity 1 22 0 884 214 25 0 chr4 102991129 102991288 -81297374 + MER58A DNA MER1_type 3 165 0 27 0 0 0 chr4 102991590 102991617 -81297045 + AT_rich Low_complexity Low_complexity 1 27 0 189 331 137 29 chr4 102991803 102991942 -81296720 - L2 LINE L2 0 3272 3119 2291 109 10 6 chr4 102992490 102992801 -81295861 + AluSx SINE Alu 1 312 0 1037 191 41 0 chr4 102992911 102993105 -81295557 - MER3 DNA MER1_type -2 207 6 22 94 0 0 chr4 102993517 102993581 -81295081 + AT_rich Low_complexity Low_complexity 1 64 0 297 373 36 48 chr4 102993647 102993899 -81294763 - L2 LINE L2 -658 2656 2408 208 399 68 14 chr4 102994042 102994190 -81294472 + L2 LINE L2 2872 3027 -245 593 267 48 0 chr4 102994751 102994916 -81293746 - MIR SINE MIR 0 262 90 186 43 0 0 chr4 102995303 102995326 -81293336 + (GA)n Simple_repeat Simple_repeat 2 24 0 1663 166 3 47 chr4 102995492 102995812 -81292850 + AluJb SINE Alu 1 306 -6 36 0 0 0 chr4 102995845 102995881 -81292781 + AT_rich Low_complexity Low_complexity 1 36 0 1930 254 63 54 chr4 102996080 102996853 -81291809 + MER20B DNA MER1_type 2 781 -2 25 51 0 0 chr4 102998135 102998174 -81290488 + AT_rich Low_complexity Low_complexity 1 39 0 2033 113 17 14 chr4 102999576 102999868 -81288794 - AluSx SINE Alu -13 299 7 25 31 0 0 chr4 103000083 103000115 -81288547 + AT_rich Low_complexity Low_complexity 1 32 0 202 255 43 0 chr4 103000223 103000270 -81288392 + MIR SINE MIR 72 120 -142 835 48 0 48 chr4 103000270 103000395 -81288267 - SVA Other Other 0 1386 1268 1463 48 27 0 chr4 103000395 103000582 -81288080 - LTR5 LTR ERVK -639 330 139 295 87 22 0 chr4 103000582 103000628 -81288034 - LTR5 LTR ERVK -784 185 139 7410 60 7 99 chr4 103000628 103001802 -81286860 - SVA Other Other -264 1122 57 234 0 0 0 chr4 103001803 103001829 -81286833 + (GGGAGA)n Simple_repeat Simple_repeat 2 27 0 264 361 0 10 chr4 103002169 103002266 -81286396 - L2 LINE L2 -50 3222 3127 270 265 162 37 chr4 103002556 103002692 -81285970 - MIR SINE MIR -105 157 5 443 226 68 17 chr4 103003567 103003744 -81284918 - HsTC2 DNA Tc2 -6 1892 1707 * 1073 233 67 17 chr4 103003741 103004041 -81284621 - HsTC2 DNA Tc2 -1583 315 1 1179 256 161 21 chr4 103004967 103005659 -81283003 + L2 LINE L2 2531 3313 0 379 291 45 0 chr4 103007264 103007374 -81281288 + L2 LINE L2 3199 3313 0 2419 69 3 3 chr4 103007652 103007957 -81280705 + AluSx SINE Alu 1 305 -7 321 319 175 18 chr4 103008839 103009181 -81279481 - HAL1 LINE L1 -586 1921 1526 725 206 0 0 chr4 103009181 103009317 -81279345 - FLAM_A SINE Alu -6 136 1 2503 231 71 61 chr4 103009483 103010781 -81277881 - L1ME2 LINE L1 -11 6153 4850 823 256 179 19 chr4 103011123 103011326 -81277336 - L1ME3 LINE L1 -277 5885 5716 297 0 0 0 chr4 103011326 103011359 -81277303 + (TG)n Simple_repeat Simple_repeat 2 34 0 823 256 179 19 chr4 103011359 103011623 -81277039 - L1ME3 LINE L1 -446 5716 5343 265 319 94 29 chr4 103011598 103011905 -81276757 - HAL1 LINE L1 -1447 1060 734 * 23 0 0 0 chr4 103012348 103012371 -81276291 + AT_rich Low_complexity Low_complexity 1 23 0 2220 81 40 3 chr4 103012958 103013255 -81275407 + AluSg SINE Alu 1 308 -2 190 75 0 125 chr4 103014325 103014365 -81274297 + L2 LINE L2 3238 3272 0 315 197 42 0 chr4 103014906 103014977 -81273685 + MER116 DNA Mariner 7 80 0 455 238 94 72 chr4 103015142 103015323 -81273339 - MIR SINE MIR -2 260 76 1700 166 0 64 chr4 103016176 103016430 -81272232 + AluJo SINE Alu 1 231 -81 3962 87 22 2 chr4 103016430 103016973 -81271689 - MER41A LTR ERV1 0 554 1 1700 166 0 64 chr4 103016973 103017044 -81271618 + AluJo SINE Alu 231 305 -7 494 273 128 54 chr4 103017410 103017909 -81270753 - MER34 LTR ERV1 -6 536 1 4050 140 40 37 chr4 103018314 103019022 -81269640 - MER72 LTR ERV1 -5 717 8 295 313 287 7 chr4 103019398 103019548 -81269114 + MER91A DNA MER1_type 1 192 -4 21 36 0 0 chr4 103021246 103021274 -81267388 + AT_rich Low_complexity Low_complexity 1 28 0 29 70 0 0 chr4 103021373 103021430 -81267232 + AT_rich Low_complexity Low_complexity 1 57 0 1202 213 17 92 chr4 103021439 103021594 -81267068 - MLT2C1 LTR ERVL -67 330 215 672 208 0 8 chr4 103021594 103021742 -81266920 - FLAM_A SINE Alu 0 147 1 1202 213 17 92 chr4 103021742 103021942 -81266720 - MLT2C1 LTR ERVL -182 215 1 2237 112 51 28 chr4 103022262 103022618 -81266044 - THE1B LTR MaLR 0 364 1 2026 139 39 54 chr4 103023572 103023931 -81264731 - MER44D DNA MER2_type -1882 605 379 2021 80 50 33 chr4 103023931 103024230 -81264432 - AluY SINE Alu -7 304 1 2026 139 39 54 chr4 103024230 103024259 -81264403 - MER44D DNA MER2_type -2108 379 351 612 197 182 0 chr4 103024260 103024392 -81264270 - MER44D DNA MER2_type -549 156 1 242 259 25 25 chr4 103024489 103024570 -81264092 - L2 LINE L2 -194 3078 2998 1025 231 53 12 chr4 103024572 103024815 -81263847 - MIR SINE MIR 0 262 10 628 347 174 11 chr4 103024814 103025560 -81263102 - L2 LINE L2 -296 2976 2009 * 1218 137 9 19 chr4 103026551 103026763 -81261899 + Tigger2 DNA MER2_type 1 210 -2508 727 166 7 48 chr4 103026757 103026902 -81261760 + Tigger2 DNA MER2_type 2578 2716 -2 * 2405 75 0 0 chr4 103027781 103028076 -81260586 + AluY SINE Alu 1 295 -16 835 107 0 16 chr4 103028087 103028208 -81260454 - AluSg SINE Alu -183 127 9 1104 104 7 0 chr4 103028211 103028365 -81260297 + AluSg/x SINE Alu 138 292 -18 5708 91 58 4 chr4 103028957 103029760 -81258902 - Charlie3 DNA MER1_type -4 2706 1860 458 105 0 40 chr4 103080195 103080271 -81208391 - AluJb SINE Alu -17 295 223 1186 192 8 29 chr4 103080307 103080547 -81208115 - AluJb SINE Alu -73 239 5 32 75 0 0 chr4 103081471 103081538 -81207124 + AT_rich Low_complexity Low_complexity 1 67 0 189 343 136 14 chr4 103083235 103083375 -81205287 + L2 LINE L2 2605 2761 -553 768 210 6 24 chr4 103084150 103084317 -81204345 - MLT1E2 LTR MaLR -169 457 294 770 167 122 0 chr4 103084318 103084474 -81204188 + THE1C LTR MaLR 199 373 -2 12119 158 27 9 chr4 103084478 103087832 -81200830 + L1MA3 LINE L1 2891 6304 -1 740 269 60 57 chr4 103088206 103088559 -81200103 - L1MEc LINE L1 -4254 2142 1785 2156 126 0 3 chr4 103088559 103088868 -81199794 - AluSx SINE Alu -4 308 1 740 269 60 57 chr4 103088868 103089026 -81199636 - L1MEc LINE L1 -4611 1785 1629 4065 235 49 40 chr4 103089283 103090230 -81198432 - L1ME2 LINE L1 -10 6154 5217 231 0 77 0 chr4 103090230 103090269 -81198393 + T-rich Low_complexity Low_complexity 5 46 0 1500 113 79 23 chr4 103090270 103090535 -81198127 - AluSq SINE Alu -33 280 1 4065 235 49 40 chr4 103090535 103090594 -81198068 - L1ME2 LINE L1 -947 5217 5160 749 185 0 0 chr4 103090594 103090713 -81197949 - FLAM_A SINE Alu -14 119 1 4065 235 49 40 chr4 103090713 103092004 -81196658 - L1ME2 LINE L1 -1004 5160 3846 1343 208 60 0 chr4 103092009 103092293 -81196369 - AluJo SINE Alu 0 302 2 3200 203 68 11 chr4 103092303 103093038 -81195624 - L1MB5 LINE L1 0 6174 5398 437 206 31 144 chr4 103093039 103093233 -81195429 + MER21B LTR ERV1 23 194 -669 1205 257 82 17 chr4 103093237 103093654 -81195008 - MLT1C LTR MaLR -2 465 22 2314 85 0 13 chr4 103094349 103094655 -81194007 + AluY SINE Alu 1 302 -9 291 325 198 5 chr4 103094833 103095045 -81193617 - MIR SINE MIR -6 256 4 723 227 80 0 chr4 103095097 103095247 -81193415 + MER5A DNA MER1_type 1 162 -27 2261 106 0 0 chr4 103095364 103095666 -81192996 - AluSx SINE Alu -2 310 9 24 0 0 0 chr4 103095793 103095817 -81192845 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr4 103096553 103096582 -81192080 + AT_rich Low_complexity Low_complexity 1 29 0 195 274 63 32 chr4 103096641 103096736 -81191926 + L3 LINE CR1 1227 1324 -253 255 375 22 22 chr4 103098231 103098367 -81190295 + L2 LINE L2 2201 2336 -978 250 303 34 11 chr4 103099406 103099495 -81189167 - PABL_B-int LTR ERV1 -3836 3286 3196 302 256 26 26 chr4 103101479 103101596 -81187066 + HAL1 LINE L1 959 1075 -1432 285 176 0 0 chr4 103101607 103101681 -81186981 + CT-rich Low_complexity Low_complexity 1 74 0 1114 146 63 0 chr4 103101738 103101943 -81186719 + L1MA2 LINE L1 6086 6303 -1 480 312 49 46 chr4 103101966 103102312 -81186350 + HAL1 LINE L1 1223 1569 -938 615 281 171 3 chr4 103102617 103102980 -81185682 + L2 LINE L2 2744 3173 -140 714 219 67 16 chr4 103103494 103103713 -81184949 - L1ME1 LINE L1 0 6178 5953 507 215 241 0 chr4 103103697 103103934 -81184728 - L1MEc LINE L1 -4000 2396 2103 * 24 32 0 0 chr4 103103967 103103998 -81184664 + AT_rich Low_complexity Low_complexity 1 31 0 828 154 0 0 chr4 103105763 103105886 -81182776 + FRAM SINE Alu 35 157 -19 25 0 0 0 chr4 103105970 103105995 -81182667 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr4 103106080 103106115 -81182547 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr4 103106495 103106524 -81182138 + AT_rich Low_complexity Low_complexity 1 29 0 27 49 0 0 chr4 103106571 103106612 -81182050 + AT_rich Low_complexity Low_complexity 1 41 0 1046 191 38 85 chr4 103107416 103107757 -81180905 - L1MC4 LINE L1 -8 8034 7710 21 0 0 0 chr4 103108988 103109009 -81179653 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr4 103109215 103109241 -81179421 + AT_rich Low_complexity Low_complexity 1 26 0 312 256 263 19 chr4 103109245 103109401 -81179261 - MIR SINE MIR -61 201 8 7800 179 57 13 chr4 103110300 103111889 -81176773 + MER52A LTR ERV1 1 1755 0 499 279 109 53 chr4 103111903 103112681 -81175981 + L1ME LINE L1 4457 5278 -868 1301 202 63 23 chr4 103112684 103112986 -81175676 + MER68 LTR ERV1 1 314 -248 211 214 0 0 chr4 103113007 103113049 -81175613 + A-rich Low_complexity Low_complexity 1 42 0 732 263 39 55 chr4 103113050 103113305 -81175357 + MER68 LTR ERV1 305 555 -7 1099 277 59 17 chr4 103113306 103113782 -81174880 + L1ME LINE L1 5304 5799 -371 849 291 93 33 chr4 103114184 103114583 -81174079 + L1MC4a LINE L1 5494 5916 -1892 322 331 16 16 chr4 103115851 103115972 -81172690 - MIR SINE MIR -76 186 66 23 33 0 0 chr4 103117310 103117340 -81171322 + AT_rich Low_complexity Low_complexity 1 30 0 1324 205 5 0 chr4 103117585 103117800 -81170862 + MER8 DNA MER2_type 23 238 -1 1288 187 46 60 chr4 103118195 103118564 -81170098 - MLT1A1 LTR MaLR -1 364 1 23 0 0 0 chr4 103119483 103119506 -81169156 + AT_rich Low_complexity Low_complexity 1 23 0 777 160 0 0 chr4 103120114 103120239 -81168423 + FLAM_C SINE Alu 1 125 -18 437 202 21 0 chr4 103120293 103120387 -81168275 + L1MCa LINE L1 523 618 -5808 378 162 121 50 chr4 103120386 103120485 -81168177 - L1MCa LINE L1 -5673 753 648 * 25 90 0 0 chr4 103120572 103120639 -81168023 + AT_rich Low_complexity Low_complexity 1 67 0 277 176 0 20 chr4 103120785 103120836 -81167826 - L2 LINE L2 -3 3269 3220 495 192 205 39 chr4 103121498 103121654 -81167008 + L1MCa LINE L1 573 754 -5672 * 2864 207 53 14 chr4 103121607 103122250 -81166412 - L1MCa LINE L1 -5755 671 4 1696 164 17 7 chr4 103123112 103123405 -81165257 + AluJb SINE Alu 1 296 -16 3186 26 3 5 chr4 103124006 103124387 -81164275 + L1PA3 LINE L1 5776 6155 0 587 315 91 35 chr4 103124791 103125938 -81162724 - L1MC/D LINE L1 -806 5620 4658 23 0 0 0 chr4 103125977 103126000 -81162662 + AT_rich Low_complexity Low_complexity 1 23 0 673 248 7 0 chr4 103126077 103126222 -81162440 + MER58B DNA MER1_type 196 341 0 277 196 0 0 chr4 103126862 103126918 -81161744 - L1ME3 LINE L1 -11 6151 6096 29 28 0 0 chr4 103126987 103127023 -81161639 + AT_rich Low_complexity Low_complexity 1 36 0 1220 293 96 27 chr4 103127051 103127928 -81160734 - L1MC/D LINE L1 -1811 4615 3679 369 299 97 14 chr4 103127929 103128136 -81160526 + L2 LINE L2 2941 3164 -149 1864 247 71 75 chr4 103128187 103128932 -81159730 - L1MC/D LINE L1 -5667 759 18 233 266 16 0 chr4 103129207 103129271 -81159391 - L1MEd LINE L1 -6049 70 6 314 267 52 30 chr4 103131616 103131751 -81156911 + L1ME LINE L1 5518 5655 -466 235 244 157 43 chr4 103131802 103131917 -81156745 - MIR SINE MIR 0 262 135 948 182 0 0 chr4 103133147 103133301 -81155361 + FRAM SINE Alu 1 153 -23 206 328 30 0 chr4 103133463 103133530 -81155132 - MIR3 SINE MIR 0 208 140 202 241 101 0 chr4 103135611 103135690 -81152972 - MIR SINE MIR -117 145 59 6805 140 10 8 chr4 103138023 103139698 -81148964 + L1MA2 LINE L1 4625 6304 0 22 35 0 0 chr4 103140460 103140489 -81148173 + AT_rich Low_complexity Low_complexity 1 29 0 1566 193 0 7 chr4 103141617 103141907 -81146755 - AluJb SINE Alu -24 288 1 2339 82 3 0 chr4 103142030 103142336 -81146326 + AluSg SINE Alu 1 307 -3 22 70 0 0 chr4 103143499 103143542 -81145120 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr4 103143654 103143683 -81144979 + AT_rich Low_complexity Low_complexity 1 29 0 214 308 92 0 chr4 103144202 103144267 -81144395 + L2 LINE L2 3208 3278 -35 297 327 28 0 chr4 103144284 103144391 -81144271 + MER94 DNA DNA 25 134 0 286 109 0 0 chr4 103144571 103144617 -81144045 + MADE1 DNA Mariner 1 46 -34 1335 112 34 0 chr4 103145811 103146016 -81142646 - L1PA15 LINE L1 -5 6160 5949 23 33 0 0 chr4 103146158 103146188 -81142474 + AT_rich Low_complexity Low_complexity 1 30 0 217 279 41 0 chr4 103146366 103146488 -81142174 + (TA)n Simple_repeat Simple_repeat 2 128 0 1201 84 0 0 chr4 103146503 103146657 -81142005 + AluSq SINE Alu 1 154 -159 2515 96 6 6 chr4 103147323 103147678 -81140984 - THE1A LTR MaLR 0 355 1 705 133 0 26 chr4 103147969 103148082 -81140580 + FLAM_C SINE Alu 20 129 -14 210 88 18 53 chr4 103148347 103148404 -81140258 + (TTTTTA)n Simple_repeat Simple_repeat 2 56 0 983 142 0 6 chr4 103148407 103148576 -81140086 - L1PA6 LINE L1 -3 6151 5984 370 303 130 5 chr4 103148874 103149059 -81139603 + L2 LINE L2 3105 3312 -1 186 295 38 76 chr4 103149146 103149251 -81139411 + MER5A DNA MER1_type 56 156 -33 13576 141 24 11 chr4 103149777 103151159 -81137503 + Tigger1 DNA MER2_type 2 1423 -995 8341 64 4 7 chr4 103151159 103152234 -81136428 - MER11C LTR ERVK 0 1071 1 13576 141 24 11 chr4 103152234 103153060 -81135602 + Tigger1 DNA MER2_type 1423 2237 -181 5578 85 12 60 chr4 103153060 103153917 -81134745 - L1PA14 LINE L1 -14 6147 5332 676 11 43 11 chr4 103153915 103154008 -81134654 + L1P LINE L1 5267 5362 -799 * 652 244 42 6 chr4 103154008 103154176 -81134486 + Tigger1 DNA MER2_type 2245 2418 0 2084 113 0 0 chr4 103154331 103154615 -81134047 - AluSc SINE Alu -25 284 1 2195 95 14 0 chr4 103154615 103154911 -81133751 - AluSp SINE Alu -13 300 1 259 160 80 0 chr4 103155073 103155123 -81133539 - L2 LINE L2 -1 3312 3259 444 100 0 111 chr4 103155683 103155722 -81132940 + MADE1 DNA Mariner 1 26 -54 2203 101 3 0 chr4 103155722 103156020 -81132642 - AluSq SINE Alu -14 299 1 444 100 0 111 chr4 103156020 103156070 -81132592 + MADE1 DNA Mariner 26 80 0 481 277 122 44 chr4 103157755 103158076 -81130586 - L1M4 LINE L1 -1483 4663 4318 870 264 92 4 chr4 103158081 103158320 -81130342 + MIR SINE MIR 1 260 -2 381 272 191 21 chr4 103158356 103158639 -81130023 - L1M4 LINE L1 -1870 4276 3946 2043 222 69 0 chr4 103159178 103159642 -81129020 + L1M1 LINE L1 806 1301 -6264 * 42248 36 22 1 chr4 103159638 103165518 -81123144 - L1PA3 LINE L1 -149 6006 1 416 75 0 0 chr4 103166648 103166715 -81121947 + L1MA7 LINE L1 6223 6289 -2 239 281 56 34 chr4 103166951 103167129 -81121533 + L1ME4a LINE L1 5852 6033 -88 230 245 0 0 chr4 103167269 103167318 -81121344 + MER112 DNA MER1_type 25 73 -187 25 75 0 0 chr4 103167477 103167530 -81121132 + AT_rich Low_complexity Low_complexity 1 53 0 22 94 0 0 chr4 103167657 103167721 -81120941 + AT_rich Low_complexity Low_complexity 1 64 0 481 209 191 0 chr4 103167798 103167903 -81120759 + FLAM_C SINE Alu 3 127 -16 1863 254 48 17 chr4 103168364 103168824 -81119838 - LTR40a LTR ERVL -17 502 29 382 319 76 28 chr4 103169101 103169352 -81119310 + L1M4 LINE L1 4757 5019 -1127 254 273 0 0 chr4 103169497 103169563 -81119099 + L1MC4 LINE L1 7918 7983 -59 2265 223 142 45 chr4 103169844 103170713 -81117949 - LTR28 LTR ERV1 -193 827 1 472 311 27 0 chr4 103170735 103170883 -81117779 - MER20B DNA MER1_type -579 204 53 3012 194 210 9 chr4 103172702 103173078 -81115584 - Charlie1a DNA MER1_type -1307 1454 1155 2023 94 21 70 chr4 103173078 103173406 -81115256 - AluSx SINE Alu 0 312 1 3012 194 210 9 chr4 103173406 103173803 -81114859 - Charlie1a DNA MER1_type -1606 1155 839 2782 13 0 0 chr4 103173803 103174116 -81114546 + AluYb8 SINE Alu 1 313 -5 3012 194 210 9 chr4 103174116 103174328 -81114334 - Charlie1a DNA MER1_type -1922 839 270 934 238 34 0 chr4 103174315 103174521 -81114141 - Charlie1a DNA MER1_type -1236 219 7 * 337 336 86 37 chr4 103174524 103174768 -81113894 + MIR SINE MIR 7 262 0 3737 202 64 105 chr4 103175377 103176714 -81111948 - Looper DNA T2_type -13 1545 263 188 183 300 0 chr4 103176890 103176950 -81111712 - MIR SINE MIR -24 238 161 30 0 0 0 chr4 103177892 103177922 -81110740 + AT_rich Low_complexity Low_complexity 1 30 0 3477 264 105 28 chr4 103178161 103178410 -81110252 - L2 LINE L2 0 3313 3084 1767 176 3 0 chr4 103178410 103178700 -81109962 - AluJo SINE Alu -21 291 1 3477 264 105 28 chr4 103178700 103179839 -81108823 - L2 LINE L2 -229 3084 1827 435 261 54 0 chr4 103179867 103179978 -81108684 + L2 LINE L2 3197 3313 0 192 184 0 0 chr4 103180190 103180239 -81108423 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 426 276 48 52 chr4 103180637 103180847 -81107815 - MIR SINE MIR -42 220 12 1836 240 39 102 chr4 103181223 103181395 -81107267 - L1MEc LINE L1 -5672 724 543 243 0 0 0 chr4 103181395 103181422 -81107240 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 1836 240 39 102 chr4 103181422 103181525 -81107137 - L1MEc LINE L1 -5853 543 435 234 0 0 0 chr4 103181525 103181551 -81107111 + (TA)n Simple_repeat Simple_repeat 1 26 0 1836 240 39 102 chr4 103181551 103182016 -81106646 - L1MEc LINE L1 -5961 435 30 25 0 0 0 chr4 103182199 103182224 -81106438 + AT_rich Low_complexity Low_complexity 1 25 0 206 213 0 13 chr4 103182726 103182801 -81105861 + (TA)n Simple_repeat Simple_repeat 2 75 0 1648 166 97 85 chr4 103183020 103183442 -81105220 - MLT2B2 LTR ERVL 0 515 89 381 22 0 0 chr4 103183444 103183490 -81105172 + (CA)n Simple_repeat Simple_repeat 1 46 0 1376 104 25 2 chr4 103183761 103184076 -81104586 - MER57A LTR ERV1 0 403 8 220 211 0 0 chr4 103185140 103185192 -81103470 + T-rich Low_complexity Low_complexity 6 57 0 1707 163 82 6 chr4 103187657 103187976 -81100686 + MER2 DNA MER2_type 1 343 -1 1640 99 0 0 chr4 103188014 103188236 -81100426 + AluY SINE Alu 82 303 -8 211 265 253 25 chr4 103189035 103189197 -81099465 - L2 LINE L2 -338 2976 2778 614 106 0 0 chr4 103189607 103189692 -81098970 - AluSg/x SINE Alu -7 303 219 6098 212 7 4 chr4 103190738 103191259 -81097403 + L1PA15 LINE L1 3969 4487 -1678 2217 124 3 0 chr4 103191259 103191565 -81097097 + AluSg SINE Alu 1 307 -3 6098 212 7 4 chr4 103191565 103193252 -81095410 + L1PA15 LINE L1 4487 6165 0 1102 145 125 16 chr4 103193396 103193644 -81095018 + L1MB1 LINE L1 5889 6163 -26 23 33 0 0 chr4 103194308 103194338 -81094324 + AT_rich Low_complexity Low_complexity 1 30 0 477 239 99 28 chr4 103194892 103195034 -81093628 - L1MCa LINE L1 -5855 571 420 242 329 49 0 chr4 103195354 103195436 -81093226 - L2 LINE L2 -1 3312 3227 389 320 102 0 chr4 103195586 103195783 -81092879 - L2 LINE L2 -434 2880 2664 11259 79 20 0 chr4 103196314 103198582 -81090080 + L1PA7 LINE L1 3864 6149 -5 12226 180 50 56 chr4 103198591 103201947 -81086715 + L1MA4 LINE L1 3428 6776 -943 658 237 35 46 chr4 103201947 103202120 -81086542 + FAM SINE Alu 3 173 -2 12226 180 50 56 chr4 103202120 103203055 -81085607 + L1MA4 LINE L1 6776 7715 -4 570 182 9 9 chr4 103203076 103203186 -81085476 - MER67A LTR ERV1 -433 110 1 629 283 78 5 chr4 103203186 103203405 -81085257 - MER69 DNA AcHobo -2187 339 105 352 304 72 49 chr4 103203566 103203829 -81084833 + HAL1 LINE L1 642 910 -1597 1973 117 9 41 chr4 103203924 103204240 -81084422 - AluSx SINE Alu -6 306 1 1383 282 153 22 chr4 103204280 103204993 -81083669 + HAL1 LINE L1 1103 1908 -599 386 261 57 102 chr4 103206163 103206320 -81082342 + MIR SINE MIR 96 245 -17 1885 162 0 3 chr4 103206949 103207251 -81081411 + AluSx SINE Alu 1 301 -11 297 286 25 103 chr4 103208829 103208981 -81079681 + L3 LINE CR1 1389 1523 -54 3280 156 17 6 chr4 103208981 103209502 -81079160 + MER1A DNA MER1_type 1 527 0 297 286 25 103 chr4 103209502 103209552 -81079110 + L3 LINE CR1 1523 1575 -2 6381 235 65 9 chr4 103209619 103209961 -81078701 - L1M4 LINE L1 -1233 4913 4591 1290 191 0 0 chr4 103209961 103210196 -81078466 - MER46A DNA MER2_type 0 236 2 6381 235 65 9 chr4 103210196 103211821 -81076841 - L1M4 LINE L1 -1555 4591 2837 291 171 0 0 chr4 103211853 103211929 -81076733 + (TA)n Simple_repeat Simple_repeat 1 76 0 202 250 17 17 chr4 103211947 103212007 -81076655 + (CATATA)n Simple_repeat Simple_repeat 5 64 0 391 291 162 13 chr4 103212009 103212483 -81076179 - L1M4 LINE L1 -1950 4196 3652 772 105 57 8 chr4 103212486 103212610 -81076052 + L1PA16 LINE L1 6028 6157 -9 24 0 0 0 chr4 103212610 103212634 -81076028 + AT_rich Low_complexity Low_complexity 1 24 0 471 334 84 23 chr4 103213172 103213400 -81075262 + MIR SINE MIR 4 242 -20 27 0 0 0 chr4 103214074 103214101 -81074561 + AT_rich Low_complexity Low_complexity 1 27 0 2064 150 50 11 chr4 103215240 103215601 -81073061 + THE1C LTR MaLR 1 375 0 9588 120 40 41 chr4 103215602 103217183 -81071479 + THE1C-int LTR MaLR 2 1580 0 357 62 0 0 chr4 103217337 103217385 -81071277 + (CA)n Simple_repeat Simple_repeat 2 49 0 1411 134 40 11 chr4 103217849 103218125 -81070537 - L1MB3 LINE L1 -1 6182 5899 7588 207 38 16 chr4 103218130 103220536 -81068126 - L1MB3 LINE L1 -356 5827 3382 1160 102 51 0 chr4 103220657 103220814 -81067848 - AluSx SINE Alu -147 165 1 298 389 98 26 chr4 103220820 103221126 -81067536 + L2 LINE L2 2620 2947 -367 20066 164 45 21 chr4 103221192 103224241 -81064421 + L1MA2 LINE L1 7 2981 -4584 1844 166 96 20 chr4 103224241 103224639 -81064023 - MSTA LTR MaLR 0 428 1 20066 164 45 21 chr4 103224639 103227525 -81061137 + L1MA2 LINE L1 2981 6089 -1476 2731 141 4 20 chr4 103227525 103228026 -81060636 + L1MA2 LINE L1 7229 7723 0 21 0 0 0 chr4 103228942 103228963 -81059699 + AT_rich Low_complexity Low_complexity 1 21 0 725 235 130 25 chr4 103229388 103229703 -81058959 + MER7A DNA MER2_type 1 346 0 231 215 169 0 chr4 103229714 103229779 -81058883 - MIR3 SINE MIR -49 159 84 264 279 15 0 chr4 103230800 103230868 -81057794 - L2 LINE L2 -1 3271 3203 287 337 11 0 chr4 103231180 103231269 -81057393 + L2 LINE L2 2971 3060 -212 204 309 0 0 chr4 103231489 103231557 -81057105 + A-rich Low_complexity Low_complexity 1 68 0 279 327 103 0 chr4 103231896 103232003 -81056659 + L2 LINE L2 3188 3305 -8 763 268 44 0 chr4 103232233 103232416 -81056246 + MIR SINE MIR 14 204 -58 28 48 0 0 chr4 103232427 103232469 -81056193 + AT_rich Low_complexity Low_complexity 1 42 0 223 330 18 54 chr4 103232712 103232824 -81055838 - MIR SINE MIR -48 214 107 2088 123 10 7 chr4 103233641 103233951 -81054711 - AluSq SINE Alu -2 311 1 2155 117 70 6 chr4 103234210 103234552 -81054110 - THE1B LTR MaLR 0 364 1 9388 120 72 11 chr4 103234552 103236042 -81052620 - THE1B-int LTR MaLR 0 1580 1 2324 99 0 0 chr4 103236046 103236349 -81052313 - AluSp SINE Alu -10 303 1 2139 138 43 0 chr4 103236352 103236701 -81051961 - THE1B LTR MaLR 0 364 1 24 32 0 0 chr4 103236706 103236737 -81051925 + AT_rich Low_complexity Low_complexity 1 31 0 327 198 103 43 chr4 103236920 103237036 -81051626 - L1ME4a LINE L1 0 6121 5999 374 0 22 0 chr4 103237044 103237090 -81051572 + (TG)n Simple_repeat Simple_repeat 2 48 0 341 329 101 50 chr4 103237166 103237464 -81051198 - L1MC4a LINE L1 -1934 5874 5562 468 279 21 7 chr4 103237783 103237923 -81050739 - LTR33 LTR ERVL -375 146 5 337 274 111 0 chr4 103237966 103238083 -81050579 - L1MC4a LINE L1 -699 5422 5293 2126 75 31 0 chr4 103238238 103238532 -81050130 + L1PA10 LINE L1 5855 6157 -11 395 316 150 36 chr4 103238723 103239276 -81049386 - L1MC4a LINE L1 -1299 4847 4232 192 200 0 0 chr4 103239688 103239728 -81048934 + (TG)n Simple_repeat Simple_repeat 2 41 0 261 146 0 0 chr4 103239986 103240034 -81048628 + (CA)n Simple_repeat Simple_repeat 2 49 0 21 0 0 0 chr4 103240360 103240381 -81048281 + AT_rich Low_complexity Low_complexity 1 21 0 2344 96 0 3 chr4 103240447 103240750 -81047912 - AluSc SINE Alu -7 302 1 203 304 59 59 chr4 103240994 103241009 -81047653 - L2 LINE L2 -2 3311 3297 183 80 0 0 chr4 103241009 103241034 -81047628 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 203 304 59 59 chr4 103241034 103241153 -81047509 - L2 LINE L2 -15 3298 3177 530 357 84 45 chr4 103241266 103241669 -81046993 - L2 LINE L2 0 3272 2854 214 246 49 16 chr4 103241678 103241739 -81046923 - MIR SINE MIR -10 252 190 998 165 66 0 chr4 103241747 103241959 -81046703 - L1MA4 LINE L1 -122 6178 5953 * 1110 143 35 25 chr4 103241939 103242142 -81046520 - L1MA4 LINE L1 -273 6027 5823 346 167 0 17 chr4 103242142 103242224 -81046438 - AluS SINE Alu 0 300 233 2410 127 20 18 chr4 103242260 103242661 -81046001 - L1MA4 LINE L1 -466 5834 5433 * 25893 31 8 0 chr4 103242662 103246578 -81042084 - L1PA2 LINE L1 0 6155 2213 8139 64 113 8 chr4 103246578 103247722 -81040940 - L1P LINE L1 -4876 1270 3 2801 170 31 13 chr4 103247720 103248335 -81040327 - L1MA4 LINE L1 -743 5403 4821 * 2426 82 0 0 chr4 103249646 103249949 -81038713 - AluY SINE Alu -8 303 1 24 32 0 0 chr4 103250288 103250319 -81038343 + AT_rich Low_complexity Low_complexity 1 31 0 3500 144 2 17 chr4 103250619 103251154 -81037508 - MER1A DNA MER1_type 0 527 1 994 163 95 36 chr4 103252280 103252501 -81036161 - MER46A DNA MER2_type 0 236 3 2237 188 81 21 chr4 103253007 103253487 -81035175 - LTR22 LTR ERVK 0 509 1 21945 94 20 1 chr4 103253487 103256624 -81032038 - HERVK22 LTR ERVK 0 6837 2314 5137 113 47 8 chr4 103256607 103257371 -81031291 - HERVK22 LTR ERVK -6043 794 1 * 2514 164 92 4 chr4 103257371 103257839 -81030823 - LTR22 LTR ERVK 0 509 1 16272 176 38 5 chr4 103257839 103258627 -81030035 - L1PA12 LINE L1 -943 6641 5881 339 25 0 0 chr4 103258627 103258667 -81029995 + (TG)n Simple_repeat Simple_repeat 2 41 0 16272 176 38 5 chr4 103258667 103263099 -81025563 - L1PA12 LINE L1 -1703 5881 1240 4984 150 11 20 chr4 103263124 103263955 -81024707 - L1PA12 LINE L1 -6739 842 20 503 219 48 0 chr4 103264050 103264155 -81024507 - MIR SINE MIR -92 170 61 26 64 0 0 chr4 103264546 103264593 -81024069 + AT_rich Low_complexity Low_complexity 1 47 0 23 33 0 0 chr4 103264635 103264665 -81023997 + AT_rich Low_complexity Low_complexity 1 30 0 343 350 119 40 chr4 103266484 103267085 -81021577 - L2 LINE L2 -18 3254 2607 305 248 59 30 chr4 103273202 103273303 -81015359 - L1ME4a LINE L1 -5 6116 6013 1104 126 32 11 chr4 103273623 103273813 -81014849 - L1MC1 LINE L1 -37 6296 6103 1262 129 10 0 chr4 103273832 103274034 -81014628 - L1PA14 LINE L1 -1 6160 5957 2154 86 4 4 chr4 103274150 103274450 -81014212 - AluY SINE Alu 0 300 1 496 85 12 37 chr4 103274646 103274728 -81013934 + MSTB LTR MaLR 5 84 -342 7142 100 155 71 chr4 103274729 103276284 -81012378 + pTR5 LTR ERV1 753 2438 0 1861 176 35 0 chr4 103276287 103276627 -81012035 + MSTB LTR MaLR 75 426 0 7906 191 37 13 chr4 103276631 103278239 -81010423 + MSTB-int LTR MaLR 5 1651 0 1774 150 32 56 chr4 103278239 103278613 -81010049 + MSTB LTR MaLR 1 365 -61 23607 140 21 17 chr4 103278638 103282368 -81006294 - L1PA8A LINE L1 -29 6417 2705 360 0 0 0 chr4 103282368 103282408 -81006254 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 23607 140 21 17 chr4 103282408 103282710 -81005952 - L1PA8A LINE L1 -3741 2705 2406 180 0 0 0 chr4 103282710 103282730 -81005932 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 23607 140 21 17 chr4 103282730 103285018 -81003644 - L1PA8A LINE L1 -4040 2406 2 273 73 0 0 chr4 103285020 103285061 -81003601 + MSTB LTR MaLR 359 399 -29 4679 172 25 5 chr4 103285072 103286018 -81002644 - L1PA16 LINE L1 -3 6163 5204 12456 210 29 23 chr4 103286018 103287617 -81001045 - L1PA11 LINE L1 -25 6149 4562 1872 148 172 8 chr4 103287617 103287983 -81000679 + MSTA LTR MaLR 3 428 0 12456 210 29 23 chr4 103287983 103290567 -80998095 - L1PA11 LINE L1 -1612 4562 1936 1447 211 13 20 chr4 103290567 103290865 -80997797 - AluJo SINE Alu -16 296 1 12456 210 29 23 chr4 103290865 103291189 -80997473 - L1PA11 LINE L1 -4238 1936 1616 251 286 185 17 chr4 103291584 103291703 -80996959 - MIR SINE MIR -107 155 17 302 265 205 49 chr4 103292605 103292790 -80995872 + LTR33 LTR ERVL 1 214 -307 289 282 30 38 chr4 103292884 103293015 -80995647 + LTR33 LTR ERVL 342 471 -50 452 306 146 9 chr4 103293060 103293279 -80995383 + MIR SINE MIR 12 260 -2 20612 108 10 11 chr4 103293442 103296664 -80991998 + L1PA6 LINE L1 11 3227 -2919 16137 59 9 0 chr4 103296666 103299534 -80989128 + L1PA6 LINE L1 3277 6154 0 3725 185 64 19 chr4 103299542 103301173 -80987489 + L1MB4 LINE L1 4477 6174 -6 1810 173 64 3 chr4 103303721 103304063 -80984599 - MLT1A1 LTR MaLR -2 363 1 195 100 0 0 chr4 103305993 103306023 -80982639 + (CA)n Simple_repeat Simple_repeat 1 30 0 13312 137 30 21 chr4 103306029 103308427 -80980235 - Tigger1 DNA MER2_type 0 2418 1 603 238 6 48 chr4 103308434 103308627 -80980035 - MIR SINE MIR -65 143 3 267 358 68 53 chr4 103308725 103309236 -80979426 + L2 LINE L2 2554 3081 -191 509 376 12 0 chr4 103309287 103309452 -80979210 - MER91A DNA MER1_type -28 168 2 394 224 147 17 chr4 103309485 103309601 -80979061 + L2 LINE L2 3169 3299 -14 225 372 32 21 chr4 103309783 103309877 -80978785 - L2 LINE L2 -78 3194 3100 244 341 70 75 chr4 103309969 103310281 -80978381 - L2 LINE L2 -224 3048 2696 209 213 0 0 chr4 103311195 103311242 -80977420 + (TA)n Simple_repeat Simple_repeat 1 47 0 902 143 0 0 chr4 103311281 103311414 -80977248 + FLAM_C SINE Alu 1 133 0 317 346 54 24 chr4 103311424 103311629 -80977033 - L2 LINE L2 -849 2465 2255 189 0 0 0 chr4 103312109 103312130 -80976532 + (TG)n Simple_repeat Simple_repeat 2 22 0 28 29 0 0 chr4 103312233 103312268 -80976394 + AT_rich Low_complexity Low_complexity 1 35 0 425 169 0 0 chr4 103312923 103312988 -80975674 + L2 LINE L2 3208 3272 0 * 522 253 58 53 chr4 103312987 103313212 -80975450 - L2 LINE L2 -2 3311 3086 381 256 43 60 chr4 103313241 103313358 -80975304 - L2 LINE L2 -538 2776 2662 2678 290 77 21 chr4 103313362 103314428 -80974234 - L2 LINE L2 -367 2947 1822 359 212 50 0 chr4 103314445 103314544 -80974118 + L1MC5 LINE L1 7478 7581 -380 607 207 60 63 chr4 103314617 103314917 -80973745 + L1MC5 LINE L1 7605 7903 -58 23 0 0 0 chr4 103315686 103315709 -80972953 + AT_rich Low_complexity Low_complexity 1 23 0 1310 246 99 17 chr4 103316999 103317596 -80971066 - L1M4 LINE L1 -3159 2987 2342 400 285 13 70 chr4 103317741 103317899 -80970763 - MER5B DNA MER1_type -1 177 29 303 186 0 71 chr4 103318445 103318515 -80970147 + L2 LINE L2 3206 3270 -2 379 330 46 17 chr4 103319489 103319662 -80969000 + MER5A DNA MER1_type 1 178 -11 184 214 0 0 chr4 103319942 103319984 -80968678 - L2 LINE L2 -8 3305 3264 1089 226 38 133 chr4 103321749 103322253 -80966409 - MLT1J LTR MaLR -52 459 4 246 230 210 0 chr4 103322282 103322382 -80966280 - MER104 DNA Tc2 -2 178 58 1515 151 0 8 chr4 103322391 103322629 -80966033 + AluSg SINE Alu 64 299 -11 538 205 122 6 chr4 103322883 103323039 -80965623 - L1MB7 LINE L1 -19 6165 5992 347 133 93 0 chr4 103323046 103323121 -80965541 - L1M4 LINE L1 -1152 4994 4913 193 236 0 73 chr4 103323150 103323205 -80965457 - L2 LINE L2 0 3313 3263 21 0 0 0 chr4 103323661 103323682 -80964980 + AT_rich Low_complexity Low_complexity 1 21 0 276 158 0 0 chr4 103323909 103323966 -80964696 + (CA)n Simple_repeat Simple_repeat 1 57 0 216 317 42 120 chr4 103324000 103324167 -80964495 + L2 LINE L2 3029 3182 -90 232 217 0 0 chr4 103324364 103324410 -80964252 + MIR3 SINE MIR 157 202 -6 535 327 145 32 chr4 103324458 103324831 -80963831 + L1MEd LINE L1 45 459 -5660 2300 45 0 0 chr4 103325060 103325325 -80963337 + AluY SINE Alu 35 299 -12 662 273 5 48 chr4 103326512 103326721 -80961941 - MER63A DNA MER1_type -10 200 1 323 366 104 0 chr4 103326753 103326917 -80961745 - MIR3 SINE MIR -14 194 14 186 320 0 40 chr4 103326955 103327030 -80961632 - L2 LINE L2 -8 3305 3234 221 329 13 36 chr4 103329905 103330030 -80958632 + MIR SINE MIR 40 164 -62 394 257 51 69 chr4 103332362 103332580 -80956082 + MIR SINE MIR 53 262 0 738 261 14 14 chr4 103333824 103334031 -80954631 + MIR SINE MIR 56 262 0 1020 168 10 5 chr4 103334352 103334549 -80954113 + L1PB1 LINE L1 3 200 -6663 9198 184 56 31 chr4 103334552 103337615 -80951047 + L1PB1 LINE L1 637 3621 -3246 2010 147 51 20 chr4 103337615 103337968 -80950694 - THE1B LTR MaLR 0 364 1 11253 106 9 6 chr4 103337968 103339544 -80949118 - THE1B-int LTR MaLR 0 1580 1 1714 143 48 85 chr4 103339544 103339586 -80949076 - THE1B LTR MaLR 0 364 322 2165 135 0 0 chr4 103339586 103339882 -80948780 + AluSx SINE Alu 1 296 -16 1714 143 48 85 chr4 103339882 103340217 -80948445 - THE1B LTR MaLR -42 322 1 9198 184 56 31 chr4 103340217 103341286 -80947376 + L1PB1 LINE L1 3621 4661 -2206 243 61 0 0 chr4 103341286 103341319 -80947343 + (CAA)n Simple_repeat Simple_repeat 1 33 0 9198 184 56 31 chr4 103341319 103342688 -80945974 + L1PB1 LINE L1 4661 6520 -347 339 25 0 0 chr4 103342688 103342728 -80945934 + (CA)n Simple_repeat Simple_repeat 2 41 0 9198 184 56 31 chr4 103342728 103343078 -80945584 + L1PB1 LINE L1 6520 6860 -7 500 342 168 39 chr4 103343442 103344655 -80944007 - L2 LINE L2 -560 2754 1385 426 235 12 0 chr4 103344714 103344799 -80943863 + L2 LINE L2 3191 3276 -37 552 221 34 7 chr4 103345016 103345165 -80943497 - MLT1G1 LTR MaLR -206 389 237 275 247 0 32 chr4 103345223 103345316 -80943346 + MLT1J LTR MaLR 377 466 -45 1260 184 20 0 chr4 103345318 103345568 -80943094 - MER72 LTR ERV1 0 722 468 951 230 11 0 chr4 103345720 103345907 -80942755 + MER5A DNA MER1_type 1 189 0 204 222 0 22 chr4 103346647 103346692 -80941970 + (CA)n Simple_repeat Simple_repeat 1 44 0 579 289 87 6 chr4 103348838 103349011 -80939651 + MIR SINE MIR 20 206 -56 2233 240 97 41 chr4 103349238 103350259 -80938403 + L2 LINE L2 2213 3298 -15 1167 246 121 34 chr4 103350408 103350855 -80937807 + MLT1D LTR MaLR 13 498 -7 1937 281 74 21 chr4 103350857 103351945 -80936717 + L1MEc LINE L1 697 1842 -4554 2837 7 0 0 chr4 103351953 103352261 -80936401 + AluYa5 SINE Alu 1 308 -3 2201 131 0 0 chr4 103352267 103352573 -80936089 + AluSc SINE Alu 1 306 -3 9102 102 57 8 chr4 103352606 103354118 -80934544 + L1PB1 LINE L1 1300 2885 -3978 * 10072 182 11 10 chr4 103354117 103357370 -80931292 + L1PB1 LINE L1 3606 6860 -7 21 0 0 0 chr4 103357370 103357391 -80931271 + AT_rich Low_complexity Low_complexity 1 21 0 1915 140 0 7 chr4 103357391 103357524 -80931138 + AluSx SINE Alu 2 134 -178 2421 60 7 3 chr4 103357524 103357823 -80930839 + AluY SINE Alu 1 300 -11 1915 140 0 7 chr4 103357823 103357974 -80930688 + AluSx SINE Alu 134 284 -28 418 107 0 0 chr4 103357918 103357974 -80930688 + Alu SINE Alu 226 310 0 241 35 0 0 chr4 103357974 103358003 -80930659 + (TAAA)n Simple_repeat Simple_repeat 2 168 0 589 220 80 44 chr4 103358007 103358420 -80930242 + L1MEc LINE L1 1859 2286 -4110 291 267 158 24 chr4 103358917 103359082 -80929580 - LTR33A LTR ERVL -61 462 276 199 50 75 0 chr4 103359401 103359441 -80929221 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 440 271 74 0 chr4 103360113 103360235 -80928427 + L2 LINE L2 3182 3312 -1 1458 185 30 83 chr4 103360344 103360739 -80927923 - MLT1B LTR MaLR 0 390 17 1127 256 56 79 chr4 103362004 103362724 -80925938 - L1ME3A LINE L1 0 6170 5468 333 391 0 0 chr4 103362893 103363031 -80925631 - L3 LINE CR1 -397 1180 1043 251 326 11 0 chr4 103363527 103363616 -80925046 - MIR SINE MIR -3 259 170 257 328 45 94 chr4 103363627 103363892 -80924770 + L2 LINE L2 2942 3193 -79 402 260 130 25 chr4 103364095 103364309 -80924353 - MIR SINE MIR -31 231 3 555 308 40 18 chr4 103364538 103364762 -80923900 + MIR SINE MIR 28 256 -6 250 156 143 13 chr4 103364769 103364846 -80923816 - MLT1L LTR MaLR -8 607 521 194 192 19 0 chr4 103365661 103365713 -80922949 + (TA)n Simple_repeat Simple_repeat 1 53 0 392 253 27 27 chr4 103365754 103365904 -80922758 - L1ME4a LINE L1 -203 5918 5769 225 299 118 16 chr4 103366017 103366144 -80922518 + MIR SINE MIR 72 211 -51 2527 40 0 13 chr4 103366855 103367159 -80921503 - AluY SINE Alu -11 300 1 188 315 27 14 chr4 103368029 103368102 -80920560 - L3b LINE CR1 -170 1413 1340 217 302 32 16 chr4 103368121 103368184 -80920478 + L2 LINE L2 3208 3271 -1 263 286 60 0 chr4 103368384 103368468 -80920194 - MIR3 SINE MIR -38 170 82 450 240 8 41 chr4 103370229 103370350 -80918312 + MIR SINE MIR 45 161 -101 463 261 131 40 chr4 103370917 103371116 -80917546 + MIR SINE MIR 46 262 0 519 263 117 39 chr4 103371584 103371763 -80916899 + MIR SINE MIR 67 259 -3 227 277 12 0 chr4 103372531 103372614 -80916048 + (TTA)n Simple_repeat Simple_repeat 1 84 0 446 291 60 28 chr4 103372630 103372812 -80915850 - MIR SINE MIR -13 249 62 1422 243 66 16 chr4 103375879 103376258 -80912404 + MLT1E LTR MaLR 193 590 -3 2028 144 43 26 chr4 103376717 103376832 -80911830 + L1MA5 LINE L1 5878 5990 -310 2047 98 0 8 chr4 103376832 103377096 -80911566 + AluSg SINE Alu 33 294 -16 2028 144 43 26 chr4 103377096 103377396 -80911266 + L1MA5 LINE L1 5990 6300 0 9764 28 2 4 chr4 103377770 103379714 -80908948 + L1PA2 LINE L1 4213 6155 0 33138 72 23 4 chr4 103379766 103384444 -80904218 + L1P LINE L1 11 4776 -1370 628 52 0 42 chr4 103384449 103384536 -80904126 + L1PA5 LINE L1 6063 6154 0 1646 175 55 3 chr4 103384821 103385113 -80903549 + AluJb SINE Alu 6 312 0 1734 84 0 4 chr4 103386219 103386456 -80902206 - THE1B LTR MaLR 0 364 129 372 319 11 55 chr4 103386487 103386669 -80901993 + L1ME4a LINE L1 5934 6107 -14 319 268 99 14 chr4 103386770 103386912 -80901750 + MIR SINE MIR 9 162 -100 489 208 0 66 chr4 103387816 103387984 -80900678 - L1MD3 LINE L1 -29 8013 7871 438 315 43 6 chr4 103388133 103388295 -80900367 + MIR SINE MIR 49 216 -46 854 204 28 6 chr4 103388529 103388710 -80899952 - MER5A DNA MER1_type 0 189 5 240 256 244 0 chr4 103388892 103388970 -80899692 - MER5A DNA MER1_type -83 106 10 29 28 0 0 chr4 103389132 103389168 -80899494 + AT_rich Low_complexity Low_complexity 1 36 0 901 98 148 44 chr4 103389233 103389338 -80899324 + MER30 DNA MER1_type 1 94 -136 324 0 0 0 chr4 103389338 103389374 -80899288 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 901 98 148 44 chr4 103389374 103389451 -80899211 + MER30 DNA MER1_type 94 202 -28 2896 153 69 5 chr4 103389534 103390111 -80898551 - L1MA5 LINE L1 -2 6298 5685 185 94 31 0 chr4 103390278 103390310 -80898352 + A-rich Low_complexity Low_complexity 4 36 0 287 305 58 46 chr4 103390498 103390672 -80897990 - L2 LINE L2 -1276 2038 1863 694 253 52 6 chr4 103390791 103390965 -80897697 - MER5A DNA MER1_type -7 182 1 703 238 72 0 chr4 103390975 103391156 -80897506 - MER20 DNA MER1_type -19 200 7 564 226 168 0 chr4 103391766 103391921 -80896741 + MER5A DNA MER1_type 9 189 0 21 57 0 0 chr4 103392416 103392451 -80896211 + AT_rich Low_complexity Low_complexity 1 35 0 1903 142 0 46 chr4 103392601 103392926 -80895736 + AluJo SINE Alu 1 310 -2 1272 249 93 25 chr4 103394158 103394512 -80894150 - L3b LINE CR1 -68 1515 1138 425 262 67 13 chr4 103496242 103496264 -80792398 - L1MA10 LINE L1 -3 6331 6310 3029 214 67 39 chr4 103496264 103497155 -80791507 - L1ME2 LINE L1 -25 6139 5220 228 111 0 0 chr4 103497155 103497191 -80791471 + (TA)n Simple_repeat Simple_repeat 2 37 0 3029 214 67 39 chr4 103497191 103497263 -80791399 - L1ME2 LINE L1 -944 5220 5151 282 309 8 8 chr4 103497309 103497432 -80791230 - L1ME2 LINE L1 -1081 5065 4943 2623 75 0 3 chr4 103497538 103497885 -80790777 - L1PB1 LINE L1 -5 6146 5801 2244 76 28 0 chr4 103497936 103498224 -80790438 + AluY SINE Alu 1 296 -15 208 219 0 0 chr4 103498459 103498500 -80790162 + (CA)n Simple_repeat Simple_repeat 2 42 0 2278 122 0 0 chr4 103498535 103498846 -80789816 - AluSx SINE Alu -1 311 1 378 245 109 20 chr4 103500657 103500804 -80787858 + L2 LINE L2 3154 3313 0 1528 332 76 37 chr4 103500860 103501966 -80786696 + HERV16 LTR ERVL 3775 4925 -729 396 188 62 54 chr4 103502023 103502135 -80786527 + HERV16 LTR ERVL 4555 4667 -329 616 298 87 30 chr4 103502557 103502856 -80785806 + LTR16A LTR ERVL 83 398 -52 393 309 36 96 chr4 103502856 103503157 -80785505 - L2 LINE L2 -465 2849 2567 2372 99 0 0 chr4 103503717 103504021 -80784641 + AluSg SINE Alu 1 304 -6 410 236 115 87 chr4 103504233 103504441 -80784221 - MLT1K LTR MaLR -9 579 366 253 303 42 25 chr4 103504508 103504627 -80784035 - MLT1K LTR MaLR -320 268 148 1212 63 88 0 chr4 103507601 103507760 -80780902 - AluY SINE Alu -16 295 123 28 0 0 0 chr4 103508318 103508346 -80780316 + AT_rich Low_complexity Low_complexity 1 28 0 457 270 0 9 chr4 103508935 103509046 -80779616 - MIR3 SINE MIR -13 195 86 1538 153 3 80 chr4 103509959 103510259 -80778403 + AluJo SINE Alu 1 277 -35 7301 176 151 35 chr4 103511457 103513030 -80775632 - MER52A LTR ERV1 0 1755 1 659 262 106 11 chr4 103513588 103513824 -80774838 - MIR SINE MIR 0 262 8 820 224 11 33 chr4 103514021 103514140 -80774522 - MLT1C LTR MaLR -2 465 350 2347 89 3 0 chr4 103514140 103514442 -80774220 - AluSc SINE Alu -6 303 1 820 224 11 33 chr4 103514442 103514505 -80774157 - MLT1C LTR MaLR -117 350 287 1577 29 0 0 chr4 103514518 103514715 -80773947 - AluY SINE Alu 0 302 106 446 165 21 21 chr4 103514910 103515007 -80773655 - L1PA16 LINE L1 -10 6156 6060 628 219 31 79 chr4 103515009 103515237 -80773425 - MLT1C LTR MaLR -228 239 23 185 254 0 136 chr4 103515326 103515436 -80773226 - L2 LINE L2 -1 3312 3218 22 0 0 0 chr4 103515562 103515584 -80773078 + AT_rich Low_complexity Low_complexity 1 22 0 240 358 53 48 chr4 103516826 103517013 -80771649 - L2 LINE L2 0 3313 3126 332 221 51 139 chr4 103517036 103517194 -80771468 - MER21B LTR ERV1 -14 849 706 4598 139 35 1 chr4 103517198 103517939 -80770723 - Tigger1 DNA MER2_type -253 2165 1400 3851 202 117 25 chr4 103518217 103519239 -80769423 + MER52C LTR ERV1 162 1278 0 7996 140 52 4 chr4 103519239 103520576 -80768086 - Tigger1 DNA MER2_type -1017 1401 1 2804 19 0 0 chr4 103521066 103521375 -80767287 + AluYa5 SINE Alu 1 309 -2 525 294 37 37 chr4 103521602 103521789 -80766873 - MIR SINE MIR -1 261 75 240 346 59 29 chr4 103523713 103523849 -80764813 - L2 LINE L2 -234 3079 2940 230 305 0 0 chr4 103523890 103523949 -80764713 - L2 LINE L2 -533 2781 2723 438 150 0 0 chr4 103523949 103524029 -80764633 + L1MA10 LINE L1 6250 6329 -5 21 0 0 0 chr4 103525487 103525508 -80763154 + AT_rich Low_complexity Low_complexity 1 21 0 1680 184 41 46 chr4 103525589 103525981 -80762681 + MLT1B LTR MaLR 1 390 0 21 36 0 0 chr4 103526629 103526657 -80762005 + AT_rich Low_complexity Low_complexity 1 28 0 977 268 84 54 chr4 103527254 103527512 -80761150 - MLT1J2 LTR MaLR -10 440 164 2069 182 5 35 chr4 103527512 103527914 -80760748 - MLT1B LTR MaLR 0 390 1 977 268 84 54 chr4 103527914 103528047 -80760615 - MLT1J2 LTR MaLR -286 164 37 300 154 0 0 chr4 103529248 103529300 -80759362 + (TA)n Simple_repeat Simple_repeat 1 52 0 594 291 121 36 chr4 103529385 103529749 -80758913 - MLT1J1 LTR MaLR -24 422 28 638 117 97 0 chr4 103529878 103529981 -80758681 + MER85 DNA T2_type 1 113 -26 239 283 0 0 chr4 103530395 103530455 -80758207 - L1MC4 LINE L1 -1331 6711 6652 360 64 0 0 chr4 103530456 103530503 -80758159 + (TG)n Simple_repeat Simple_repeat 2 48 0 543 201 12 95 chr4 103530923 103531092 -80757570 - L1MA10 LINE L1 -8 6326 6172 2405 234 93 18 chr4 103531099 103531773 -80756889 - L1ME1 LINE L1 -270 5896 5274 1365 53 0 0 chr4 103531773 103531977 -80756685 + L1PA3 LINE L1 5976 6179 0 2405 234 93 18 chr4 103531977 103532637 -80756025 - L1ME1 LINE L1 -892 5274 4459 1821 272 32 14 chr4 103532712 103533341 -80755321 - L1ME1 LINE L1 -1810 4336 3697 233 357 91 0 chr4 103533401 103533544 -80755118 + MIR SINE MIR 90 245 -17 2222 156 17 15 chr4 103533675 103534086 -80754576 - L1PB4 LINE L1 0 6156 5745 1271 115 0 0 chr4 103534087 103534269 -80754393 + L1P5 LINE L1 5516 5697 -459 674 303 75 55 chr4 103534734 103535318 -80753344 + MLT1L LTR MaLR 8 603 -12 28 48 0 0 chr4 103535456 103535498 -80753164 + AT_rich Low_complexity Low_complexity 1 42 0 693 124 0 18 chr4 103535648 103535761 -80752901 - AluSq/x SINE Alu -180 133 23 289 244 55 0 chr4 103536150 103536237 -80752425 + MIR SINE MIR 5 101 -107 21271 47 3 1 chr4 103536373 103539834 -80748828 - L1PA5 LINE L1 -2 6152 2685 7384 58 2 2 chr4 103539834 103540793 -80747869 + L1PA5 LINE L1 1721 2679 -3467 326 281 83 25 chr4 103540995 103541116 -80747546 - MIR SINE MIR -64 144 17 2350 78 0 0 chr4 103541408 103541701 -80746961 - AluY SINE Alu -18 293 1 8726 147 17 33 chr4 103543846 103545319 -80743343 + L1M1 LINE L1 21 1470 -6095 263 24 0 0 chr4 103545319 103545360 -80743302 + AluY SINE Alu 259 299 0 332 301 59 33 chr4 103545922 103546075 -80742587 - L1M4 LINE L1 -2308 3838 3682 22 56 0 0 chr4 103546354 103546390 -80742272 + AT_rich Low_complexity Low_complexity 1 36 0 10064 27 4 0 chr4 103546924 103548871 -80739791 - L1PA3 LINE L1 0 6155 4181 272 221 93 0 chr4 103549464 103549550 -80739112 + L1M4c LINE L1 783 876 -5508 1389 198 42 70 chr4 103549589 103549972 -80738690 - MLT1B LTR MaLR -18 372 1 3100 231 42 33 chr4 103550018 103551001 -80737661 + L1M4c LINE L1 902 1893 -4491 4875 180 54 2 chr4 103551089 103552873 -80735789 + L1MA7 LINE L1 4418 6291 0 1988 243 30 23 chr4 103552875 103553905 -80734757 + L1M4c LINE L1 2068 3112 -3270 2254 97 0 10 chr4 103554011 103554319 -80734343 - AluY SINE Alu -6 305 1 1993 128 24 0 chr4 103554401 103554691 -80733971 - AluSx SINE Alu -15 297 1 21 0 0 0 chr4 103555483 103555504 -80733158 + AT_rich Low_complexity Low_complexity 1 21 0 188 67 33 0 chr4 103556091 103556121 -80732541 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 326 376 31 12 chr4 103556207 103556369 -80732293 + MIR SINE MIR 5 169 -93 1625 88 169 0 chr4 103556789 103557050 -80731612 + AluSq SINE Alu 1 305 -8 1521 92 4 18 chr4 103557143 103557370 -80731292 + MSTA-int LTR MaLR 1357 1580 0 2051 127 130 23 chr4 103557370 103557755 -80730907 + MSTA LTR MaLR 1 426 -2 14584 24 0 0 chr4 103558248 103559979 -80728683 - L1PA2 LINE L1 -1490 4656 2926 7771 17 0 0 chr4 103559972 103561464 -80727198 + L1PA2 LINE L1 4660 6151 -4 210 91 0 0 chr4 103561468 103561501 -80727161 + (A)n Simple_repeat Simple_repeat 1 33 0 367 232 62 9 chr4 103562880 103562992 -80725670 - Charlie7 DNA MER1_type -1923 689 572 6241 164 46 8 chr4 103562992 103563454 -80725208 - L1MA5 LINE L1 -10 6290 5847 234 0 0 0 chr4 103563454 103563480 -80725182 + (TA)n Simple_repeat Simple_repeat 2 27 0 6241 164 46 8 chr4 103563480 103563767 -80724895 - L1MA5 LINE L1 -453 5847 5573 180 0 0 0 chr4 103563767 103563787 -80724875 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 6241 164 46 8 chr4 103563787 103565108 -80723554 - L1MA5 LINE L1 -727 5573 4147 1429 144 70 14 chr4 103565125 103565410 -80723252 - L1MA4 LINE L1 -22 6278 5978 * 5856 203 40 7 chr4 103565382 103566739 -80721923 - L1MA5 LINE L1 -1984 4162 2761 30 27 0 0 chr4 103567164 103567201 -80721461 + AT_rich Low_complexity Low_complexity 1 37 0 204 205 0 0 chr4 103567987 103568026 -80720636 + (CA)n Simple_repeat Simple_repeat 2 40 0 987 248 62 7 chr4 103568304 103568578 -80720084 + L2 LINE L2 2365 2653 -661 209 250 158 0 chr4 103568576 103568652 -80720010 + L2 LINE L2 3185 3272 0 * 405 254 167 0 chr4 103569153 103569291 -80719371 + Charlie2 DNA MER1_type 170 330 -2452 244 114 0 0 chr4 103569557 103569592 -80719070 + THE1A LTR MaLR 1 35 -320 5667 110 5 6 chr4 103569592 103570400 -80718262 + THE1C-int LTR MaLR 774 1580 0 2065 119 52 35 chr4 103570400 103570769 -80717893 + THE1C LTR MaLR 1 375 0 1617 184 90 24 chr4 103571146 103571613 -80717049 + Charlie2 DNA MER1_type 1890 2387 -475 198 353 0 15 chr4 103571809 103571877 -80716785 + L2 LINE L2 3202 3268 -4 26 0 0 0 chr4 103572588 103572614 -80716048 + AT_rich Low_complexity Low_complexity 1 26 0 243 128 0 0 chr4 103572794 103572833 -80715829 + LTR45B LTR ERV1 4 42 -447 1411 121 40 0 chr4 103572843 103573042 -80715620 - AluSc SINE Alu -21 288 82 2791 166 15 7 chr4 103573042 103573501 -80715161 + LTR45B LTR ERV1 25 487 -2 3774 194 5 1 chr4 103573788 103574562 -80714100 - L1 LINE L1 -2864 3282 2506 1389 92 5 4 chr4 103574561 103574769 -80713893 + L1P5 LINE L1 5606 5790 -361 * 315 357 123 7 chr4 103575054 103575208 -80713454 + L2 LINE L2 3078 3249 -23 26 0 0 0 chr4 103575420 103575446 -80713216 + AT_rich Low_complexity Low_complexity 1 26 0 2052 129 6 18 chr4 103575480 103575813 -80712849 + L1PA15 LINE L1 5836 6164 -1 433 316 0 0 chr4 103576234 103576351 -80712311 - MER69A DNA AcHobo -54 123 7 6009 191 102 71 chr4 103576912 103577487 -80711175 - L1MC3 LINE L1 -3 7782 7226 290 256 47 0 chr4 103577487 103577573 -80711089 - MLT1F1 LTR MaLR -443 124 35 6009 191 102 71 chr4 103577573 103578606 -80710056 - L1MC3 LINE L1 -559 7226 6037 471 260 12 95 chr4 103579164 103579332 -80709330 - MIR SINE MIR -35 227 75 1620 227 197 4 chr4 103579983 103580520 -80708142 + L1MB1 LINE L1 4433 5073 -1073 547 207 36 0 chr4 103580877 103580988 -80707674 + HAL1 LINE L1 151 265 -2242 1061 293 144 2 chr4 103581021 103581856 -80706806 + HAL1 LINE L1 332 1331 -1176 193 57 57 0 chr4 103582269 103582304 -80706358 + (TA)n Simple_repeat Simple_repeat 2 38 0 217 332 133 66 chr4 103582988 103583184 -80705478 + L2 LINE L2 2939 3147 -125 393 313 40 30 chr4 103583257 103583455 -80705207 - MIR SINE MIR -14 248 49 446 322 131 17 chr4 103583570 103583868 -80704794 - L2 LINE L2 -785 2529 2198 21 36 0 0 chr4 103583965 103583993 -80704669 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 103585231 103585254 -80703408 + AT_rich Low_complexity Low_complexity 1 23 0 212 347 112 0 chr4 103585432 103585530 -80703132 + MIR SINE MIR 29 137 -125 300 301 39 10 chr4 103586918 103587021 -80701641 - MLT1I LTR MaLR -301 108 3 2040 75 11 25 chr4 103587172 103587451 -80701211 + AluSc SINE Alu 27 301 -8 442 286 53 37 chr4 103588424 103588613 -80700049 + L2 LINE L2 3104 3295 -18 2768 194 34 27 chr4 103588724 103589497 -80699165 + L1MB1 LINE L1 5126 5904 -285 244 274 0 0 chr4 103590056 103590118 -80698544 - L1ME2 LINE L1 -109 6055 5994 184 222 56 83 chr4 103590182 103590254 -80698408 + L2 LINE L2 2983 3052 -261 624 189 91 21 chr4 103590311 103590454 -80698208 + MER5A DNA MER1_type 36 188 -1 397 171 12 37 chr4 103590454 103590530 -80698132 + MIR SINE MIR 75 148 -114 557 196 0 0 chr4 103590590 103590692 -80697970 + AluJ/FLAM SINE Alu 1 102 -210 216 0 0 0 chr4 103590897 103590921 -80697741 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 640 322 90 4 chr4 103591007 103591240 -80697422 + MIR SINE MIR 8 260 -2 21 0 0 0 chr4 103591530 103591551 -80697111 + AT_rich Low_complexity Low_complexity 1 21 0 431 268 65 13 chr4 103593737 103593759 -80694903 - L1MA10 LINE L1 -3 6331 6310 3075 216 45 36 chr4 103593759 103594650 -80694012 - L1ME2 LINE L1 -25 6139 5243 228 111 0 0 chr4 103594650 103594686 -80693976 + (TA)n Simple_repeat Simple_repeat 2 37 0 1720 237 118 5 chr4 103595033 103595632 -80693030 - L1ME2 LINE L1 -1081 5065 4399 35 71 0 0 chr4 103595983 103596053 -80692609 + AT_rich Low_complexity Low_complexity 1 70 0 5302 147 21 3 chr4 103596053 103597071 -80691591 - L1PB4 LINE L1 0 6156 5121 290 79 0 0 chr4 103597071 103597109 -80691553 + FRAM SINE Alu 63 100 -66 4044 269 103 25 chr4 103597111 103597410 -80691252 - L1ME2 LINE L1 -1842 4304 4030 186 103 0 0 chr4 103597410 103597439 -80691223 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 4044 269 103 25 chr4 103597439 103598937 -80689725 - L1ME2 LINE L1 -2116 4030 2326 1744 180 0 0 chr4 103598937 103599248 -80689414 - AluY SINE Alu 0 311 1 4044 269 103 25 chr4 103599248 103599484 -80689178 - L1ME2 LINE L1 -3820 2326 2110 325 166 34 0 chr4 103599489 103599562 -80689100 - L1P4 LINE L1 -476 5689 5614 689 270 73 30 chr4 103599696 103600091 -80688571 - L1P4 LINE L1 -477 5689 5312 2516 74 0 0 chr4 103600091 103600402 -80688260 - AluY SINE Alu 0 311 1 689 270 73 30 chr4 103600402 103600739 -80687923 - L1P4 LINE L1 -854 5312 2110 660 160 0 0 chr4 103600740 103600846 -80687816 - L1PB4 LINE L1 -1933 4213 4108 2290 233 12 21 chr4 103600850 103601514 -80687148 - L1PB4 LINE L1 -2515 3631 2974 430 307 47 27 chr4 103601539 103601835 -80686827 - L1MEc LINE L1 -6073 323 22 535 270 115 26 chr4 103603518 103603744 -80684918 + MER112 DNA MER1_type 15 260 0 556 164 18 0 chr4 103603824 103603856 -80684806 - L1MB4 LINE L1 0 6180 6150 20615 50 2 1 chr4 103603856 103607255 -80681407 + L1PA5 LINE L1 2740 6153 -1 556 164 18 0 chr4 103607255 103607332 -80681330 - L1MB4 LINE L1 -30 6150 6069 234 239 57 75 chr4 103608908 103609067 -80679595 - L1ME4a LINE L1 -2 6119 5964 1935 145 3 44 chr4 103609690 103610034 -80678628 - MER44D DNA MER2_type -9 600 1 816 267 88 57 chr4 103610376 103610728 -80677934 + L2 LINE L2 308 670 -2644 1623 274 55 14 chr4 103610764 103611278 -80677384 + MER90 LTR ERV1 41 575 0 1315 308 84 32 chr4 103611278 103611840 -80676822 + L2 LINE L2 667 1257 -2057 4694 101 88 105 chr4 103611841 103613250 -80675412 - pTR5 LTR ERV1 0 2438 749 1479 287 88 29 chr4 103613250 103613737 -80674925 + L2 LINE L2 1246 1784 -1530 1335 197 146 19 chr4 103613737 103614149 -80674513 + MLT2C2 LTR ERVL 1 464 0 1479 287 88 29 chr4 103614149 103614320 -80674342 + L2 LINE L2 1784 1943 -1371 2251 232 22 14 chr4 103614321 103614816 -80673846 + MLT1D LTR MaLR 5 503 -2 185 330 11 33 chr4 103614818 103614909 -80673753 + L2 LINE L2 1961 2049 -1265 2094 194 47 56 chr4 103614928 103615070 -80673592 - L1MC3 LINE L1 -14 7771 7629 3105 105 5 0 chr4 103615070 103615500 -80673162 + MER57B LTR ERV1 3 434 0 2094 194 47 56 chr4 103615500 103615894 -80672768 - L1MC3 LINE L1 -156 7629 7240 1990 180 26 37 chr4 103615897 103616115 -80672547 - MLT2A2 LTR ERVL 0 554 335 7561 25 3 0 chr4 103616115 103617244 -80671418 - L1PA4 LINE L1 -3 6152 5029 1990 180 26 37 chr4 103617244 103617595 -80671067 - MLT2A2 LTR ERVL -219 335 1 650 161 36 9 chr4 103617595 103617707 -80670955 - L1MC3 LINE L1 -544 7241 7127 1416 239 107 59 chr4 103617725 103618182 -80670480 + L2 LINE L2 2275 2753 -561 1089 273 57 36 chr4 103618168 103618552 -80670110 + L2 LINE L2 2922 3313 0 * 722 314 40 40 chr4 103618857 103619227 -80669435 - MLT1K LTR MaLR -51 537 168 1795 133 74 25 chr4 103620644 103620997 -80667665 + THE1C LTR MaLR 1 370 -5 482 276 70 49 chr4 103621067 103621252 -80667410 + MIR3 SINE MIR 8 196 -12 2419 58 0 3 chr4 103622626 103622938 -80665724 + AluY SINE Alu 1 311 0 471 161 12 0 chr4 103623429 103623510 -80665152 + MSTA LTR MaLR 3 84 -344 589 131 228 3 chr4 103623510 103623658 -80665004 + MSTA LTR MaLR 1 201 -197 421 117 0 0 chr4 103623655 103623715 -80664947 + MSTA LTR MaLR 369 428 0 * 755 155 136 70 chr4 103623739 103623952 -80664710 - MSTA LTR MaLR -17 411 185 21 36 0 0 chr4 103624603 103624631 -80664031 + AT_rich Low_complexity Low_complexity 1 28 0 3986 143 3 7 chr4 103624838 103625452 -80663210 + MSTA-int LTR MaLR 948 1559 -21 1347 145 95 127 chr4 103625452 103625473 -80663189 + MSTA LTR MaLR 71 91 -337 1809 141 173 16 chr4 103625473 103625842 -80662820 + MSTA LTR MaLR 1 427 -1 1347 145 95 127 chr4 103625842 103626203 -80662459 + MSTA LTR MaLR 91 428 0 22 35 0 0 chr4 103626707 103626736 -80661926 + AT_rich Low_complexity Low_complexity 1 29 0 2338 52 7 3 chr4 103627920 103628211 -80660451 + AluY SINE Alu 1 292 -19 609 267 124 5 chr4 103628293 103628503 -80660159 + MIR SINE MIR 3 237 -25 2217 193 52 2 chr4 103628531 103628976 -80659686 - MLT1C LTR MaLR 0 467 1 510 262 40 20 chr4 103629426 103629575 -80659087 + MIR SINE MIR 2 153 -109 229 304 18 0 chr4 103629582 103629638 -80659024 + L2 LINE L2 3216 3272 0 221 293 146 0 chr4 103629660 103629742 -80658920 + MIR SINE MIR 166 259 -3 281 202 24 95 chr4 103631185 103631269 -80657393 + MIR3 SINE MIR 94 171 -37 1921 142 0 4 chr4 103631287 103631591 -80657071 - AluSx SINE Alu 0 307 5 619 280 75 42 chr4 103631682 103632123 -80656539 + L2 LINE L2 2711 3164 -149 11655 78 10 1 chr4 103632653 103635008 -80653654 + L1PA7 LINE L1 3785 6151 -3 189 250 0 0 chr4 103636826 103636866 -80651796 + L2 LINE L2 3269 3308 -5 250 378 47 47 chr4 103636899 103637264 -80651398 + L2 LINE L2 2895 3259 -13 739 241 6 0 chr4 103637589 103637755 -80650907 + MIR SINE MIR 74 240 -22 238 297 73 19 chr4 103638600 103638721 -80649941 + MIR SINE MIR 11 141 -67 427 244 0 9 chr4 103640390 103640505 -80648157 + L1MC5 LINE L1 7747 7860 -101 1052 216 94 0 chr4 103641120 103641374 -80647288 - L1PB4 LINE L1 -4 6152 5875 2121 100 0 10 chr4 103641873 103642162 -80646500 - AluY SINE Alu -25 286 1 1205 133 19 68 chr4 103642244 103642552 -80646110 - AluSx SINE Alu -15 297 5 322 240 13 45 chr4 103642825 103643023 -80645639 + L1MB1 LINE L1 5991 6183 0 22 0 0 0 chr4 103643891 103643913 -80644749 + AT_rich Low_complexity Low_complexity 1 22 0 3733 217 38 4 chr4 103644088 103645028 -80643634 - L1 LINE L1 -2414 3732 2761 29 0 0 0 chr4 103645459 103645488 -80643174 + AT_rich Low_complexity Low_complexity 1 29 0 1597 156 0 0 chr4 103645590 103645846 -80642816 + AluYa5 SINE Alu 54 309 -2 525 294 37 37 chr4 103646073 103646260 -80642402 - MIR SINE MIR -1 261 75 5789 141 61 4 chr4 103647593 103648564 -80640098 - Tigger1 DNA MER2_type -1392 1026 1 2226 113 0 3 chr4 103649056 103649356 -80639306 + AluSx SINE Alu 1 299 -13 189 248 83 105 chr4 103649513 103649646 -80639016 + MIR SINE MIR 133 262 0 1343 184 34 8 chr4 103650397 103650664 -80637998 + L1MB1 LINE L1 5895 6168 0 21 0 0 0 chr4 103651551 103651572 -80637090 + AT_rich Low_complexity Low_complexity 1 21 0 6967 60 2 10 chr4 103653328 103654570 -80634092 - L1PA7 LINE L1 -1 6153 4915 357 224 31 10 chr4 103655085 103655183 -80633479 + MIR SINE MIR 163 262 0 350 405 23 0 chr4 103655291 103655422 -80633240 - L2 LINE L2 -3 3269 3136 23 0 0 0 chr4 103655424 103655447 -80633215 + AT_rich Low_complexity Low_complexity 1 23 0 3249 119 82 0 chr4 103656008 103656530 -80632132 - MER34B LTR ERV1 0 565 1 1025 164 0 0 chr4 103656578 103656737 -80631925 - MSTC LTR MaLR 0 428 270 543 268 108 37 chr4 103656993 103657403 -80631259 - L1ME3 LINE L1 -201 5961 5524 28 61 0 0 chr4 103657674 103657723 -80630939 + AT_rich Low_complexity Low_complexity 1 49 0 332 266 13 0 chr4 103657760 103657839 -80630823 - HERVL LTR ERVL -4021 1633 1554 1590 147 91 53 chr4 103658098 103658459 -80630203 + THE1C LTR MaLR 1 375 0 28 86 0 0 chr4 103660125 103660195 -80628467 + AT_rich Low_complexity Low_complexity 1 70 0 22 70 0 0 chr4 103660243 103660286 -80628376 + AT_rich Low_complexity Low_complexity 1 43 0 433 291 75 24 chr4 103661323 103661577 -80627085 - L1MC5 LINE L1 -60 7901 7635 12680 128 35 4 chr4 103662544 103664534 -80624128 - Tigger1 DNA MER2_type 0 2418 367 299 247 82 44 chr4 103665340 103665498 -80623164 + L1MDb LINE L1 1118 1281 -5128 760 292 69 0 chr4 103665733 103665993 -80622669 + LTR16A1 LTR ERVL 178 455 -2 350 246 62 31 chr4 103666068 103666198 -80622464 + L1 LINE L1 4390 4523 -1623 5671 180 23 21 chr4 103666603 103668782 -80619880 - L1MA7 LINE L1 -20 6271 4094 1453 191 78 9 chr4 103668777 103669211 -80619451 - L1MA7 LINE L1 -2564 3582 3119 * 3643 240 49 45 chr4 103669209 103669489 -80619173 + L1M1 LINE L1 2868 3145 -4420 2126 77 47 3 chr4 103669489 103669787 -80618875 + AluY SINE Alu 1 311 0 3643 240 49 45 chr4 103669787 103671174 -80617488 + L1M1 LINE L1 3145 4538 -3027 495 0 0 0 chr4 103671181 103671236 -80617426 + (TA)n Simple_repeat Simple_repeat 2 56 0 949 246 117 33 chr4 103671324 103671751 -80616911 + LTR40c LTR ERVL 1 463 -2 26 0 0 0 chr4 103671858 103671884 -80616778 + AT_rich Low_complexity Low_complexity 1 26 0 1224 187 51 10 chr4 103672800 103672879 -80615783 - MER33 DNA MER1_type -2262 323 249 2384 88 0 10 chr4 103672879 103673187 -80615475 + AluSc SINE Alu 1 305 -4 1224 187 51 10 chr4 103673187 103673401 -80615261 - MER33 DNA MER1_type -2336 249 18 586 210 76 6 chr4 103673933 103674090 -80614572 - L1MD3 LINE L1 -8 7987 7820 200 238 0 0 chr4 103675270 103675312 -80613350 + A-rich Low_complexity Low_complexity 1 42 0 235 239 37 97 chr4 103675755 103675889 -80612773 - MIR SINE MIR -50 212 87 26 30 0 0 chr4 103676336 103676369 -80612293 + AT_rich Low_complexity Low_complexity 1 33 0 3614 166 89 3 chr4 103677104 103677779 -80610883 + MER44D DNA MER2_type 1 605 0 22 0 0 0 chr4 103677854 103677876 -80610786 + AT_rich Low_complexity Low_complexity 1 22 0 23 24 0 24 chr4 103678258 103678276 -80610386 + AT_rich Low_complexity Low_complexity 1 18 -22 2101 123 0 3 chr4 103678276 103678577 -80610085 + AluSq SINE Alu 1 300 -13 23 24 0 24 chr4 103678577 103678599 -80610063 + AT_rich Low_complexity Low_complexity 18 40 0 12097 189 43 14 chr4 103679550 103681868 -80606794 + L1M1 LINE L1 15 2399 -5166 3121 210 33 38 chr4 103681868 103682846 -80605816 + L1M1 LINE L1 3441 4413 -3152 * 6810 121 25 7 chr4 103682845 103684113 -80604549 + L1MA2 LINE L1 5017 6304 0 1119 229 68 76 chr4 103684337 103684764 -80603898 - L1ME3A LINE L1 0 6170 5741 2220 142 19 16 chr4 103684764 103685138 -80603524 + THE1C LTR MaLR 1 375 0 9743 111 34 40 chr4 103685138 103686728 -80601934 + THE1C-int LTR MaLR 1 1580 0 2549 102 16 16 chr4 103686730 103687103 -80601559 + THE1C LTR MaLR 3 375 0 1119 229 68 76 chr4 103687103 103687182 -80601480 - L1ME3A LINE L1 -429 5741 5664 536 281 55 65 chr4 103687345 103687743 -80600919 - L1ME3A LINE L1 -485 5689 5296 235 238 151 48 chr4 103689411 103689537 -80599125 - MLT1J LTR MaLR -3 508 370 4616 191 20 32 chr4 103689570 103690347 -80598315 + L1MC1 LINE L1 4483 5268 -1065 1968 152 0 3 chr4 103690347 103690650 -80598012 + AluSx SINE Alu 1 302 -10 4616 191 20 32 chr4 103690650 103691504 -80597158 + L1MC1 LINE L1 5268 6085 -248 460 186 18 35 chr4 103691500 103691613 -80597049 - L1ME3A LINE L1 -914 5232 5122 * 3942 223 51 9 chr4 103692005 103692430 -80596232 - L1MB7 LINE L1 -19 6165 5759 2201 137 25 8 chr4 103692430 103692788 -80595874 - THE1B LTR MaLR 0 364 1 3942 223 51 9 chr4 103692788 103694354 -80594308 - L1MB7 LINE L1 -425 5759 4098 * 7090 141 10 10 chr4 103694350 103694888 -80593774 + L1MA1 LINE L1 4278 4815 -1487 2087 123 0 3 chr4 103694888 103695188 -80593474 + AluSg SINE Alu 3 301 -9 7090 141 10 10 chr4 103695188 103696672 -80591990 + L1MA1 LINE L1 4815 6302 0 2871 257 54 34 chr4 103696680 103697946 -80590716 - L1MB7 LINE L1 -2027 4119 2825 1158 33 0 39 chr4 103697946 103698099 -80590563 - L1PA7 LINE L1 0 6154 6008 2871 257 54 34 chr4 103698099 103698114 -80590548 - L1MB7 LINE L1 -3321 2825 2812 625 235 0 0 chr4 103698131 103698284 -80590378 - L1MA10 LINE L1 -2 6332 6180 3465 259 45 45 chr4 103698301 103701308 -80587354 - L1 LINE L1 -2723 4383 1721 853 314 39 46 chr4 103701350 103701798 -80586864 - L1 LINE L1 -5752 1285 766 1369 275 51 13 chr4 103701807 103702437 -80586225 - L1M4 LINE L1 -3322 2824 2171 1243 252 74 3 chr4 103702445 103702755 -80585907 + MLT1A1 LTR MaLR 4 335 -30 195 42 0 0 chr4 103702759 103702783 -80585879 + (TTAGGG)n Simple_repeat Simple_repeat 5 28 0 9669 211 48 23 chr4 103702783 103705775 -80582887 - L1P4 LINE L1 -558 5608 2528 415 237 68 8 chr4 103706564 103706682 -80581980 + LTR67 LTR ERVL 432 556 -1 2294 185 51 7 chr4 103706702 103707135 -80581527 - LTR47A LTR ERVL 0 452 1 518 224 111 30 chr4 103707954 103708171 -80580491 + MIR SINE MIR 8 241 -21 223 284 0 15 chr4 103711713 103711780 -80576882 + CT-rich Low_complexity Low_complexity 2 67 0 226 235 42 118 chr4 103712405 103712524 -80576138 + MIR SINE MIR 104 213 -49 188 356 96 7 chr4 103713123 103713258 -80575404 + MIR3 SINE MIR 38 184 -24 759 87 87 0 chr4 103713327 103713442 -80575220 - MER85 DNA T2_type 0 139 15 180 0 0 0 chr4 103713459 103713479 -80575183 + (A)n Simple_repeat Simple_repeat 1 20 0 710 320 28 12 chr4 103714803 103715053 -80573609 + MIR SINE MIR 3 256 -6 243 204 0 0 chr4 103715340 103715394 -80573268 + CT-rich Low_complexity Low_complexity 1 54 0 1674 252 36 15 chr4 103715406 103715938 -80572724 - L1MC4 LINE L1 -119 7923 7381 1651 202 41 67 chr4 103716036 103716497 -80572165 + MER31B LTR ERV1 18 466 0 1930 191 83 40 chr4 103717343 103717813 -80570849 + LTR2B LTR ERV1 1 490 0 1125 229 4 29 chr4 103717813 103718058 -80570604 + MSTD LTR MaLR 21 259 -137 755 242 80 12 chr4 103718107 103718616 -80570046 + L1ME LINE L1 4912 5453 -711 409 331 43 27 chr4 103718634 103718818 -80569844 + L1ME LINE L1 5509 5695 -475 25 83 0 0 chr4 103719345 103719405 -80569257 + AT_rich Low_complexity Low_complexity 1 60 0 3698 253 118 30 chr4 103719565 103721330 -80567332 + L1M4 LINE L1 2110 4030 -2116 669 169 14 159 chr4 103721927 103722223 -80566439 - Tigger6 DNA MER2_type -40 1557 1305 270 160 0 0 chr4 103722490 103722540 -80566122 + CT-rich Low_complexity Low_complexity 2 51 0 708 219 0 0 chr4 103722558 103722722 -80565940 + CT-rich Low_complexity Low_complexity 3 166 0 1708 157 6 29 chr4 103722827 103723139 -80565523 - AluJo SINE Alu -3 309 5 1705 192 0 0 chr4 103723156 103723468 -80565194 - AluJb SINE Alu 0 312 1 372 211 44 0 chr4 103723476 103723566 -80565096 + MLT1J LTR MaLR 416 509 -2 183 222 0 0 chr4 103723619 103723655 -80565007 + MIR SINE MIR 193 228 -34 352 238 129 38 chr4 103723940 103724150 -80564512 - HAL1 LINE L1 -1 2506 2278 815 305 35 9 chr4 103724169 103724484 -80564178 - HAL1 LINE L1 -281 2226 1904 23 33 0 0 chr4 103724488 103724518 -80564144 + AT_rich Low_complexity Low_complexity 1 30 0 228 160 40 0 chr4 103724608 103724658 -80564004 + L1MC4 LINE L1 6640 6691 -1351 387 311 186 41 chr4 103724677 103725385 -80563277 - HAL1 LINE L1 -1573 934 124 27 0 0 0 chr4 103725408 103725435 -80563227 + AT_rich Low_complexity Low_complexity 1 27 0 1058 125 0 0 chr4 103726549 103726732 -80561930 + AluYa5 SINE Alu 132 314 0 312 297 55 42 chr4 103726739 103726904 -80561758 + MLT1J LTR MaLR 25 191 -320 190 352 0 0 chr4 103727284 103727338 -80561324 + L2 LINE L2 3258 3311 -2 843 249 113 36 chr4 103727917 103728279 -80560383 + MLT1B LTR MaLR 1 390 0 254 337 36 0 chr4 103728445 103728528 -80560134 + MIR SINE MIR 122 207 -55 22 56 0 0 chr4 103729110 103729146 -80559516 + AT_rich Low_complexity Low_complexity 1 36 0 707 289 24 9 chr4 103729347 103729558 -80559104 + MIR SINE MIR 44 257 -5 23 0 0 0 chr4 103731339 103731362 -80557300 + AT_rich Low_complexity Low_complexity 1 23 0 1352 258 25 8 chr4 103731691 103732059 -80556603 - MLT1A2 LTR MaLR 0 374 1 2863 291 63 21 chr4 103732076 103732923 -80555739 - L1MB5 LINE L1 -29 6145 5262 476 32 16 0 chr4 103732923 103732985 -80555677 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 2863 291 63 21 chr4 103732985 103733032 -80555630 - L1MB5 LINE L1 -912 5262 5218 4739 143 28 30 chr4 103733046 103733518 -80555144 - L1PA16 LINE L1 -5 6161 5689 2516 163 59 6 chr4 103733518 103733990 -80554672 + LOR1a LTR ERV1 1 497 0 4739 143 28 30 chr4 103733990 103734361 -80554301 - L1PA16 LINE L1 -477 5689 5319 2576 72 3 0 chr4 103734468 103734803 -80553859 - L1PA8 LINE L1 -134 6038 5703 263 298 87 25 chr4 103734968 103735129 -80553533 + MIR SINE MIR 53 223 -39 * 422 257 35 9 chr4 103735105 103735218 -80553444 + L2 LINE L2 3197 3312 -1 21 36 0 0 chr4 103736677 103736705 -80551957 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr4 103737154 103737189 -80551473 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr4 103738965 103738989 -80549673 + AT_rich Low_complexity Low_complexity 1 24 0 598 290 65 14 chr4 103739015 103739232 -80549430 - MIR SINE MIR 0 262 35 677 133 55 16 chr4 103739868 103739996 -80548666 + AluSp/q SINE Alu 181 313 0 298 234 57 38 chr4 103740065 103740223 -80548439 + L1ME3A LINE L1 5744 5904 -266 2557 187 24 41 chr4 103740251 103740762 -80547900 - L1MC3 LINE L1 -8 7777 7276 1947 139 9 25 chr4 103740762 103741079 -80547583 - AluSx SINE Alu 0 312 1 2557 187 24 41 chr4 103741079 103741181 -80547481 - L1MC3 LINE L1 -509 7276 7174 646 174 79 155 chr4 103742500 103742765 -80545897 + MLT1A1 LTR MaLR 1 245 -145 2368 151 34 10 chr4 103743834 103744252 -80544410 - MSTA LTR MaLR 0 428 1 6528 184 41 12 chr4 103744252 103745487 -80543175 - MSTA-int LTR MaLR 0 1651 381 498 139 16 107 chr4 103745491 103745613 -80543049 + L1MA9 LINE L1 5762 5872 -440 772 134 26 15 chr4 103745759 103745891 -80542771 + MLT1A1 LTR MaLR 242 429 -3 2595 184 6 4 chr4 103745966 103746455 -80542207 - L1MA9 LINE L1 -448 5864 5375 344 323 39 16 chr4 103746457 103746584 -80542078 - MIR SINE MIR -121 141 12 22 35 0 0 chr4 103746588 103746617 -80542045 + AT_rich Low_complexity Low_complexity 1 29 0 332 253 48 0 chr4 103747277 103747360 -80541302 + L2 LINE L2 2172 2258 -1056 935 253 40 0 chr4 103747572 103747825 -80540837 + LTR43 LTR ERV1 195 457 -145 572 350 70 24 chr4 103748378 103749105 -80539557 - ERVL LTR ERVL -1646 4118 3317 1490 138 12 31 chr4 103749238 103749492 -80539170 - THE1B LTR MaLR 0 364 116 971 144 14 7 chr4 103749633 103749779 -80538883 - FRAM SINE Alu -30 146 1 486 0 0 0 chr4 103749803 103749857 -80538805 + (CA)n Simple_repeat Simple_repeat 2 55 0 336 100 40 0 chr4 103749889 103749939 -80538723 - THE1A LTR MaLR 0 355 304 210 71 0 0 chr4 103749955 103749983 -80538679 + (TA)n Simple_repeat Simple_repeat 1 28 0 749 138 0 0 chr4 103749983 103750092 -80538570 - FLAM_C SINE Alu -30 113 5 1670 329 67 41 chr4 103750096 103750570 -80538092 - ERVL LTR ERVL -2765 2999 2539 1323 252 71 14 chr4 103750570 103751007 -80537655 + MLT1C LTR MaLR 2 463 -4 1670 329 67 41 chr4 103751007 103751705 -80536957 - ERVL LTR ERVL -3225 2539 1797 300 354 111 29 chr4 103751946 103752226 -80536436 - ERVL LTR ERVL -3531 1465 1163 405 237 124 57 chr4 103752392 103752569 -80536093 + MIR SINE MIR 74 262 0 256 263 0 40 chr4 103753084 103753160 -80535502 + MIR SINE MIR 190 262 0 22 0 0 0 chr4 103753339 103753361 -80535301 + AT_rich Low_complexity Low_complexity 1 22 0 251 315 9 45 chr4 103753381 103753492 -80535170 + MARNA DNA Mariner 468 574 -12 1688 174 42 44 chr4 103753953 103754362 -80534300 - L1MC2 LINE L1 0 6344 5937 984 169 0 0 chr4 103754375 103754535 -80534127 - L1PB4 LINE L1 -7 6149 5990 616 199 7 7 chr4 103754540 103754686 -80533976 - L1MC2 LINE L1 -815 5331 5186 347 401 0 0 chr4 103754890 103755042 -80533620 - MIR SINE MIR -32 230 79 1122 85 0 17 chr4 103755890 103756066 -80532596 + (GAA)n Simple_repeat Simple_repeat 2 174 0 257 106 0 21 chr4 103756072 103756119 -80532543 + (AGGGGG)n Simple_repeat Simple_repeat 3 48 0 219 280 0 0 chr4 103756119 103756169 -80532493 + GA-rich Low_complexity Low_complexity 2 51 0 377 301 113 54 chr4 103756192 103756600 -80532062 + L1MCc LINE L1 24 455 -5968 2006 248 79 12 chr4 103756824 103757533 -80531129 + L1MCc LINE L1 807 1571 -4851 1252 265 121 23 chr4 103757543 103758293 -80530369 + L1MCc LINE L1 2190 3013 -4109 305 276 52 52 chr4 103758295 103758429 -80530233 + L1MCc LINE L1 4100 4233 -2708 262 200 114 14 chr4 103758429 103758499 -80530163 + L1ME1 LINE L1 5758 5834 -332 307 292 97 21 chr4 103758499 103758643 -80530019 + LTR68 LTR ERV1 8 162 -578 899 236 123 10 chr4 103759070 103759379 -80529283 + L1ME1 LINE L1 5823 6166 0 263 58 519 0 chr4 103760141 103760193 -80528469 + MADE1 DNA Mariner 1 79 -1 248 369 45 23 chr4 103760194 103760370 -80528292 + MIR SINE MIR 82 261 -1 216 0 0 0 chr4 103761905 103761929 -80526733 + (TA)n Simple_repeat Simple_repeat 2 25 0 * 363 44 0 0 chr4 103761928 103761973 -80526689 + (TG)n Simple_repeat Simple_repeat 2 46 0 260 241 10 32 chr4 103762381 103762471 -80526191 - MIR SINE MIR -91 117 36 429 20 0 0 chr4 103762921 103762971 -80525691 + (TA)n Simple_repeat Simple_repeat 1 50 0 276 242 62 16 chr4 103763029 103763157 -80525505 - L1MC4a LINE L1 -1793 6015 5882 2745 212 35 23 chr4 103763159 103763778 -80524884 + LTR27 LTR ERV1 3 629 -7 256 267 127 12 chr4 103763958 103764123 -80524539 - HAL1b LINE L1 -481 867 684 847 303 60 0 chr4 103767492 103767710 -80520952 - MIR SINE MIR -21 241 11 586 316 101 45 chr4 103768313 103769274 -80519388 - L1 LINE L1 -2496 3650 2602 269 292 11 0 chr4 103769425 103769514 -80519148 + (TA)n Simple_repeat Simple_repeat 2 91 0 292 165 11 44 chr4 103769665 103769756 -80518906 + (TTTA)n Simple_repeat Simple_repeat 2 89 0 2210 247 42 26 chr4 103770414 103771110 -80517552 - L1M4 LINE L1 -784 5362 4656 2197 144 0 45 chr4 103771105 103771479 -80517183 + THE1-int LTR MaLR 876 1232 -348 * 1096 237 19 34 chr4 103772444 103772796 -80515866 - MLT2B3 LTR ERVL 0 554 211 7321 148 53 7 chr4 103772796 103774029 -80514633 - THE1-int LTR MaLR -286 1294 5 334 234 0 0 chr4 103774262 103774326 -80514336 - MLT1D LTR MaLR -441 64 1 430 319 91 14 chr4 103774354 103774718 -80513944 + L1MEc LINE L1 1432 1823 -4573 29 28 0 0 chr4 103774756 103774792 -80513870 + AT_rich Low_complexity Low_complexity 1 36 0 511 298 59 41 chr4 103774903 103775565 -80513097 + L1MEc LINE L1 2225 2898 -3317 30 59 0 0 chr4 103775681 103775732 -80512930 + AT_rich Low_complexity Low_complexity 1 51 0 2090 289 39 40 chr4 103775761 103777463 -80511199 + L1MCc LINE L1 51 1876 -4887 867 290 47 35 chr4 103777512 103778025 -80510637 + L1MCc LINE L1 3179 3697 -3244 2098 255 92 2 chr4 103778034 103778888 -80509774 + L1M4 LINE L1 4232 5162 -984 * 7266 239 18 7 chr4 103778887 103780749 -80507913 + L1P LINE L1 2643 4525 -1621 8894 72 1 30 chr4 103781065 103781606 -80507056 - L1PA6 LINE L1 -4 6150 5595 2214 105 0 10 chr4 103781606 103781919 -80506743 - AluSx SINE Alu -2 310 1 8894 72 1 30 chr4 103781919 103783424 -80505238 - L1PA6 LINE L1 -559 5595 4147 16475 114 14 16 chr4 103783424 103785996 -80502666 - L1PA6 LINE L1 -3029 3117 552 28 102 0 0 chr4 103786450 103786548 -80502114 + AT_rich Low_complexity Low_complexity 1 98 0 1685 123 109 120 chr4 103786719 103787151 -80501511 + MSTA LTR MaLR 1 427 -1 257 273 45 18 chr4 103787232 103787342 -80501320 - L1ME LINE L1 -385 5736 5624 411 237 112 40 chr4 103787478 103787630 -80501032 + MLT1K LTR MaLR 11 173 -420 1106 266 63 40 chr4 103787634 103787984 -80500678 + MLT1E LTR MaLR 119 476 -117 1608 264 126 20 chr4 103788021 103788388 -80500274 - L1MC4 LINE L1 -935 7107 6653 213 39 0 0 chr4 103788388 103788414 -80500248 + (TA)n Simple_repeat Simple_repeat 2 27 0 1608 264 126 20 chr4 103788414 103788634 -80500028 - L1MC4 LINE L1 -1389 6653 6458 264 217 36 36 chr4 103789368 103789451 -80499211 + GA-rich Low_complexity Low_complexity 3 85 0 25 0 0 0 chr4 103789565 103789590 -80499072 + AT_rich Low_complexity Low_complexity 1 25 0 232 217 0 0 chr4 103790195 103790241 -80498421 + L1MEc LINE L1 1321 1366 -5030 459 308 128 21 chr4 103791525 103791759 -80496903 - MIR SINE MIR -3 259 1 754 217 55 50 chr4 103792253 103792666 -80495996 - MER39 LTR ERV1 0 707 114 6043 95 6 0 chr4 103792903 103793787 -80494875 - L1PA7 LINE L1 -2160 3986 3098 * 6587 83 15 1 chr4 103793783 103795813 -80492849 + L1PA7 LINE L1 4009 6154 0 744 207 71 0 chr4 103795870 103796142 -80492520 - MER33 DNA MER1_type 0 363 33 477 288 31 19 chr4 103796794 103796954 -80491708 + MLT1K LTR MaLR 323 484 -104 305 374 46 24 chr4 103797148 103797520 -80491142 + L1ME1 LINE L1 200 579 -5626 367 325 141 44 chr4 103797784 103798082 -80490580 + HAL1 LINE L1 1427 1753 -754 432 82 0 0 chr4 103798107 103798168 -80490494 + (CA)n Simple_repeat Simple_repeat 2 62 0 387 266 105 58 chr4 103798391 103798770 -80489892 + L1ME1 LINE L1 2154 2505 -3710 639 304 40 18 chr4 103798784 103799008 -80489654 - MIR SINE MIR -27 235 7 184 290 129 0 chr4 103799151 103799213 -80489449 + L2 LINE L2 2238 2307 -1007 1142 322 59 10 chr4 103799241 103800029 -80488633 + L2 LINE L2 2424 3313 0 579 270 116 20 chr4 103800059 103800656 -80488006 + L1ME1 LINE L1 2803 3456 -2759 228 336 35 26 chr4 103800664 103800780 -80487882 + MER20B DNA MER1_type 6 122 -661 1489 197 39 0 chr4 103800877 103801182 -80487480 + L1MB5 LINE L1 5848 6164 -10 205 148 19 19 chr4 103801242 103801296 -80487366 + (TA)n Simple_repeat Simple_repeat 1 54 0 487 314 84 52 chr4 103801504 103801969 -80486693 + L1MCc LINE L1 24 503 -5920 2707 237 47 6 chr4 103801998 103802832 -80485830 + L1ME1 LINE L1 4592 5459 -756 * 4304 289 71 36 chr4 103802828 103804962 -80483700 + L1PA15 LINE L1 2 2744 -4837 6109 197 27 6 chr4 103804965 103807008 -80481654 + L1PA15 LINE L1 5534 7598 -5 2303 261 30 42 chr4 103807008 103807789 -80480873 + L1ME1 LINE L1 5449 6220 -15 239 321 93 21 chr4 103807942 103808179 -80480483 + L1MC/D LINE L1 4906 5159 -987 268 280 106 31 chr4 103808239 103808432 -80480230 + L1MC/D LINE L1 5450 5656 -586 254 235 176 0 chr4 103808599 103808684 -80479978 + MIR SINE MIR 97 196 -66 1303 210 43 47 chr4 103809588 103809888 -80478774 - AluJo SINE Alu -13 299 1 595 65 0 0 chr4 103810450 103810527 -80478135 - L1PA4 LINE L1 -3281 2865 2789 20245 39 6 1 chr4 103810527 103813793 -80474869 + L1PA4 LINE L1 2875 6155 0 417 355 38 16 chr4 103814661 103814844 -80473818 + MLT1K LTR MaLR 195 381 -207 283 361 110 7 chr4 103814891 103815046 -80473616 + L2 LINE L2 2383 2553 -761 1268 273 56 56 chr4 103815073 103815553 -80473109 + MLT1H LTR MaLR 41 520 -29 1274 305 48 17 chr4 103815562 103816222 -80472440 + L2 LINE L2 2630 3312 -1 195 339 202 4 chr4 103816334 103816582 -80472080 - L2 LINE L2 -1074 2240 1944 2143 128 7 0 chr4 103818315 103818619 -80470043 - AluSq SINE Alu -7 306 1 189 0 0 0 chr4 103820498 103820519 -80468143 + (TTTTTA)n Simple_repeat Simple_repeat 3 23 0 805 272 35 4 chr4 103821221 103821453 -80467209 + Charlie1 DNA MER1_type 1 239 -2522 429 214 43 8 chr4 103821436 103821553 -80467109 + Charlie1 DNA MER1_type 2619 2739 -22 * 504 304 150 0 chr4 103822499 103822719 -80465943 + MIR SINE MIR 8 260 -2 360 320 45 59 chr4 103823817 103824087 -80464575 - L2 LINE L2 -261 3052 2783 300 276 26 72 chr4 103824251 103824403 -80464259 - Charlie8 DNA MER1_type -2189 228 84 473 125 0 14 chr4 103824424 103824496 -80464166 + Tigger2 DNA MER2_type 3 73 -2645 717 249 23 6 chr4 103824530 103824703 -80463959 - MER8 DNA MER2_type -63 176 1 584 208 0 16 chr4 103824844 103824969 -80463693 + FRAM SINE Alu 46 168 -8 233 357 12 12 chr4 103826078 103826162 -80462500 + MIR SINE MIR 2 85 -177 661 297 163 21 chr4 103828294 103829007 -80459655 + L2 LINE L2 2496 3313 0 457 258 68 81 chr4 103831710 103831958 -80456704 + L3 LINE CR1 1198 1442 -135 237 224 0 0 chr4 103835078 103835136 -80453526 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 25 0 0 0 chr4 103838503 103838528 -80450134 + AT_rich Low_complexity Low_complexity 1 25 0 34 0 0 0 chr4 103838742 103838776 -80449886 + AT_rich Low_complexity Low_complexity 1 34 0 183 172 16 109 chr4 103841322 103841386 -80447276 + L2 LINE L2 3189 3246 -67 218 279 29 15 chr4 103841613 103841681 -80446981 - L2 LINE L2 -4 3309 3241 252 250 216 6 chr4 103841860 103842036 -80446626 - Charlie2a DNA MER1_type -1880 982 770 698 281 138 20 chr4 103842091 103842440 -80446222 - Charlie2a DNA MER1_type -2356 426 37 277 306 48 66 chr4 103843302 103843479 -80445183 - MER5A DNA MER1_type 0 178 3 300 111 0 0 chr4 103844248 103844293 -80444369 + (TG)n Simple_repeat Simple_repeat 2 46 0 303 71 0 0 chr4 103844293 103844333 -80444329 + (CA)n Simple_repeat Simple_repeat 1 82 0 303 71 0 0 chr4 103844333 103844375 -80444287 + (CA)n Simple_repeat Simple_repeat 1 42 0 215 152 22 0 chr4 103844794 103844840 -80443822 + (CATATA)n Simple_repeat Simple_repeat 4 50 0 42335 37 23 1 chr4 103845391 103851407 -80437255 + L1PA2 LINE L1 2 6153 -2 24 0 0 0 chr4 103851411 103851435 -80437227 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr4 103852248 103852273 -80436389 + AT_rich Low_complexity Low_complexity 1 25 0 280 327 55 80 chr4 103853225 103853626 -80435036 + L2 LINE L2 2844 3234 -38 24 32 0 0 chr4 103855724 103855755 -80432907 + AT_rich Low_complexity Low_complexity 1 31 0 905 212 24 45 chr4 103856506 103856798 -80431864 + L1MC5 LINE L1 7625 7910 -51 1404 209 84 0 chr4 103857951 103858238 -80430424 - AluJo SINE Alu 0 312 2 691 175 32 0 chr4 103858238 103858364 -80430298 - L1MB5 LINE L1 -33 6141 6012 274 325 122 9 chr4 103858374 103858492 -80430170 - MIR SINE MIR -62 146 24 1001 169 68 0 chr4 103858497 103858674 -80429988 - MER5A DNA MER1_type 0 189 1 293 154 77 0 chr4 103859004 103859056 -80429606 + L2 LINE L2 3254 3309 -4 336 366 30 8 chr4 103859836 103859970 -80428692 + MIR SINE MIR 14 150 -112 245 250 59 0 chr4 103860225 103860293 -80428369 - MIR SINE MIR 0 262 191 867 291 181 7 chr4 103860483 103860947 -80427715 + L2 LINE L2 2391 2935 -379 508 284 39 25 chr4 103861056 103861401 -80427261 - L1ME3A LINE L1 -14 6156 5772 215 174 22 0 chr4 103861452 103861498 -80427164 + (TA)n Simple_repeat Simple_repeat 2 48 0 2679 147 30 11 chr4 103861511 103861973 -80426689 + L1MA4A LINE L1 5541 6011 -292 479 330 120 8 chr4 103862294 103862552 -80426110 - L3 LINE CR1 -1 1576 1290 2283 104 0 3 chr4 103864798 103865105 -80423557 - AluSg SINE Alu -4 306 1 8194 31 0 0 chr4 103866453 103868194 -80420468 + L1PA3 LINE L1 4406 6148 -7 252 0 0 0 chr4 103868197 103868225 -80420437 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 28 48 0 0 chr4 103868398 103868440 -80420222 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr4 103868705 103868727 -80419935 + AT_rich Low_complexity Low_complexity 1 22 0 2299 105 0 3 chr4 103868847 103869152 -80419510 + AluSq SINE Alu 10 313 0 219 114 0 0 chr4 103870008 103870043 -80418619 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 479 185 22 0 chr4 103870319 103870411 -80418251 + L1PB3 LINE L1 5698 5791 -363 261 180 0 0 chr4 103870411 103870461 -80418201 + (TA)n Simple_repeat Simple_repeat 1 50 0 2381 125 8 5 chr4 103870493 103870869 -80417793 + L1PB3 LINE L1 5776 6152 -2 306 0 0 0 chr4 103871856 103871890 -80416772 + (CA)n Simple_repeat Simple_repeat 1 34 0 457 245 174 36 chr4 103872023 103872221 -80416441 + MIR SINE MIR 38 262 0 881 231 52 0 chr4 103872337 103872566 -80416096 + Charlie4 DNA MER1_type 36 276 -1685 2540 157 25 10 chr4 103872566 103872782 -80415880 + L1MA4 LINE L1 4609 4820 -1342 486 0 0 0 chr4 103872782 103872836 -80415826 + (TG)n Simple_repeat Simple_repeat 1 54 0 2540 157 25 10 chr4 103872836 103873225 -80415437 + L1MA4 LINE L1 4820 5322 -840 854 132 0 0 chr4 103873228 103873357 -80415305 + AluSp/q SINE Alu 169 297 -16 2232 107 0 0 chr4 103873357 103873657 -80415005 + AluSg SINE Alu 3 302 -8 2700 135 20 2 chr4 103873657 103874102 -80414560 + L1MA4 LINE L1 5334 5786 -519 294 153 68 0 chr4 103874104 103874163 -80414499 - L1MA4 LINE L1 -200 6100 6038 * 1391 112 68 16 chr4 103874160 103874410 -80414252 - L1 LINE L1 -1193 4953 4691 2421 176 8 8 chr4 103874433 103874904 -80413758 + L1MA4 LINE L1 5789 6259 -41 1328 185 52 7 chr4 103874906 103875176 -80413486 + MLT2C1 LTR ERVL 54 335 -62 618 42 50 17 chr4 103875182 103875301 -80413361 + (TAGA)n Simple_repeat Simple_repeat 3 125 0 21 0 0 0 chr4 103875557 103875578 -80413084 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 103875778 103875802 -80412860 + AT_rich Low_complexity Low_complexity 1 24 0 4196 13 0 0 chr4 103875883 103876361 -80412301 - L1PA2 LINE L1 -2 6153 5676 1415 129 0 23 chr4 103877030 103877247 -80411415 - THE1B LTR MaLR -152 212 1 607 344 60 51 chr4 103877382 103877815 -80410847 - L2 LINE L2 0 3272 2836 200 226 38 38 chr4 103877939 103877992 -80410670 + L2 LINE L2 3249 3301 -12 429 206 5 43 chr4 103878000 103878184 -80410478 + GA-rich Low_complexity Low_complexity 2 178 0 303 261 23 11 chr4 103878197 103878285 -80410377 + GA-rich Low_complexity Low_complexity 3 91 0 446 218 6 24 chr4 103878296 103878466 -80410196 + GA-rich Low_complexity Low_complexity 2 168 0 192 271 71 14 chr4 103878624 103878694 -80409968 - MIR SINE MIR -113 149 76 226 289 26 0 chr4 103879503 103879579 -80409083 + CT-rich Low_complexity Low_complexity 2 79 0 623 296 90 3 chr4 103880321 103880520 -80408142 + MIR SINE MIR 15 229 -33 219 288 68 0 chr4 103880708 103880767 -80407895 + MIR SINE MIR 200 262 0 259 248 30 69 chr4 103882857 103882958 -80405704 + MIR SINE MIR 131 227 -35 31284 104 7 27 chr4 103883023 103889303 -80399359 - L1PA7 LINE L1 -5 6464 198 210 37 0 0 chr4 103889337 103889364 -80399298 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 201 279 77 48 chr4 103889513 103889617 -80399045 - MIR SINE MIR -56 206 100 182 250 0 10 chr4 103890516 103890616 -80398046 + (TA)n Simple_repeat Simple_repeat 2 100 0 241 220 0 0 chr4 103891205 103891255 -80397407 - MIR SINE MIR -70 192 143 22 56 0 0 chr4 103891502 103891538 -80397124 + AT_rich Low_complexity Low_complexity 1 36 0 361 296 30 35 chr4 103892076 103892279 -80396383 + L2 LINE L2 3111 3312 -1 198 309 62 10 chr4 103892432 103892529 -80396133 + L2 LINE L2 3150 3251 -62 204 216 39 0 chr4 103892549 103892600 -80396062 + GA-rich Low_complexity Low_complexity 3 55 0 707 200 16 0 chr4 103893038 103893163 -80395499 + FLAM_A SINE Alu 3 129 -4 349 271 160 0 chr4 103893230 103893374 -80395288 + HAL1 LINE L1 1140 1306 -1201 777 117 22 0 chr4 103893550 103893687 -80394975 + GA-rich Low_complexity Low_complexity 4 143 0 2544 182 17 22 chr4 103893703 103894462 -80394200 + L1MD1 LINE L1 4965 5714 -528 2213 132 35 0 chr4 103894489 103894859 -80393803 - L1MB4 LINE L1 -31 6149 5767 877 136 26 7 chr4 103894857 103895012 -80393650 - L1MB4 LINE L1 -346 5834 5677 * 1223 269 235 218 chr4 103895006 103895213 -80393449 + L1MD1 LINE L1 5697 5899 -343 2395 73 0 0 chr4 103895213 103895514 -80393148 + AluY SINE Alu 1 301 -10 1223 269 235 218 chr4 103895514 103895561 -80393101 + L1MD1 LINE L1 5899 5944 -298 1223 170 12 21 chr4 103895561 103895802 -80392860 + L1MD1 LINE L1 6002 6240 -2 2167 125 0 22 chr4 103895812 103896131 -80392531 + AluSx SINE Alu 1 312 0 1223 269 235 218 chr4 103896131 103896183 -80392479 + L1MD1 LINE L1 5952 6240 -2 193 180 16 33 chr4 103896183 103896244 -80392418 + GA-rich Low_complexity Low_complexity 3 62 0 376 177 80 53 chr4 103896545 103896658 -80392004 + U5 snRNA snRNA 1 116 0 278 288 43 29 chr4 103897997 103898136 -80390526 + LTR67 LTR ERVL 415 555 -2 2324 90 0 7 chr4 103898149 103898449 -80390213 - AluSc SINE Alu -11 298 1 366 307 71 16 chr4 103898452 103898579 -80390083 - MIR SINE MIR -111 151 18 23 0 0 0 chr4 103898883 103898906 -80389756 + AT_rich Low_complexity Low_complexity 1 23 0 421 335 35 39 chr4 103899561 103899764 -80388898 + MIR SINE MIR 5 206 -56 266 268 0 0 chr4 103900040 103900111 -80388551 - LTR33 LTR ERVL -2 519 449 802 181 79 0 chr4 103900144 103900371 -80388291 - Charlie5 DNA MER1_type -16 2596 2352 622 173 14 122 chr4 103900370 103900584 -80388078 - Charlie5 DNA MER1_type -2421 191 1 * 584 273 0 0 chr4 103900831 103900963 -80387699 + MER63A DNA MER1_type 44 175 -35 435 256 77 89 chr4 103900971 103901139 -80387523 - LTR33 LTR ERVL -347 174 9 189 171 0 0 chr4 103901980 103902015 -80386647 + (CA)n Simple_repeat Simple_repeat 2 36 0 432 256 40 0 chr4 103902833 103902958 -80385704 + MER103 DNA DNA 13 142 -24 182 267 0 0 chr4 103902982 103903027 -80385635 - MIR SINE MIR -70 192 148 205 147 0 0 chr4 103903091 103903125 -80385537 + MIR SINE MIR 194 227 -35 481 310 116 13 chr4 103903415 103903647 -80385015 + MIR SINE MIR 1 256 -6 21 0 0 0 chr4 103904107 103904128 -80384534 + AT_rich Low_complexity Low_complexity 1 21 0 258 143 0 0 chr4 103904709 103904758 -80383904 + (TC)n Simple_repeat Simple_repeat 2 50 0 320 64 21 0 chr4 103904758 103904805 -80383857 + (CA)n Simple_repeat Simple_repeat 1 48 0 28 29 0 0 chr4 103904819 103904854 -80383808 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr4 103905396 103905419 -80383243 + AT_rich Low_complexity Low_complexity 1 23 0 2224 79 0 4 chr4 103905894 103906196 -80382466 - AluSc SINE Alu 0 301 1 370 175 62 0 chr4 103907186 103907266 -80381396 + L1PA16 LINE L1 6081 6165 -1 238 356 38 31 chr4 103907329 103907489 -80381173 - L3 LINE CR1 -137 1440 1280 271 333 0 0 chr4 103907522 103907591 -80381071 + L2 LINE L2 3241 3309 -4 221 314 48 57 chr4 103909327 103909432 -80379230 + MIR3 SINE MIR 3 106 -102 2251 99 3 0 chr4 103909638 103909931 -80378731 - AluSc SINE Alu -15 294 1 21 36 0 0 chr4 103910032 103910060 -80378602 + AT_rich Low_complexity Low_complexity 1 28 0 205 273 91 39 chr4 103911062 103911139 -80377523 - MIR SINE MIR -110 152 72 192 97 0 0 chr4 103911341 103911372 -80377290 + (CAAAAA)n Simple_repeat Simple_repeat 6 36 0 949 232 14 10 chr4 103911478 103911685 -80376977 + MLT1C LTR MaLR 255 462 -5 611 287 62 14 chr4 103913027 103913236 -80375426 + MIR SINE MIR 1 219 -43 549 200 127 13 chr4 103913362 103913512 -80375150 - MLT1C LTR MaLR -104 363 197 320 242 281 0 chr4 103914037 103914165 -80374497 + MER5A DNA MER1_type 23 186 -3 1723 209 42 81 chr4 103914905 103915351 -80373311 + MLT1D LTR MaLR 1 426 -79 2321 79 3 0 chr4 103915351 103915655 -80373007 + AluY SINE Alu 5 309 -2 1723 209 42 81 chr4 103915655 103915726 -80372936 + MLT1D LTR MaLR 426 498 -7 27 0 0 0 chr4 103915726 103915753 -80372909 + AT_rich Low_complexity Low_complexity 1 27 0 25 31 0 0 chr4 103917754 103917786 -80370876 + AT_rich Low_complexity Low_complexity 1 32 0 549 240 185 0 chr4 103917953 103918099 -80370563 - MER5B DNA MER1_type 0 178 6 199 250 100 0 chr4 103918444 103918504 -80370158 - MIR3 SINE MIR -4 204 139 384 388 24 68 chr4 103918504 103918844 -80369818 - L2 LINE L2 0 3272 2948 246 301 86 0 chr4 103920747 103920840 -80367822 + L2 LINE L2 3209 3309 -4 2636 162 116 12 chr4 103921017 103921622 -80367040 - Charlie1a DNA MER1_type -5 1450 783 649 247 7 7 chr4 103921620 103921774 -80366888 - Charlie1a DNA MER1_type -819 636 483 * 1330 219 45 64 chr4 103921809 103921978 -80366684 - Charlie1a DNA MER1_type -2352 409 238 237 33 0 0 chr4 103921978 103922008 -80366654 + (TG)n Simple_repeat Simple_repeat 2 31 0 1330 219 45 64 chr4 103922008 103922213 -80366449 - Charlie1a DNA MER1_type -2523 238 42 36 62 0 0 chr4 103973189 103973253 -80315409 + AT_rich Low_complexity Low_complexity 1 64 0 5454 160 49 6 chr4 103973420 103975066 -80313596 + L1MA6 LINE L1 4588 6291 -9 246 32 0 0 chr4 103975098 103975129 -80313533 + (CA)n Simple_repeat Simple_repeat 2 32 0 854 300 60 32 chr4 103975131 103975760 -80312902 - L1ME3A LINE L1 -285 5885 5231 226 292 46 15 chr4 103975842 103975972 -80312690 - L1P LINE L1 -1127 5019 4886 1325 268 58 11 chr4 103976947 103977324 -80311338 - L2 LINE L2 -774 2540 2146 326 331 144 0 chr4 103977347 103977486 -80311176 - L3 LINE CR1 -1201 376 218 198 0 0 0 chr4 103979497 103979519 -80309143 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 215 265 205 0 chr4 103979727 103979810 -80308852 + MIR SINE MIR 163 262 0 23 33 0 0 chr4 103980826 103980856 -80307806 + AT_rich Low_complexity Low_complexity 1 30 0 305 172 32 11 chr4 103980863 103980956 -80307706 - L1MA7 LINE L1 -1 6290 6196 432 121 0 0 chr4 103980956 103981022 -80307640 + L1MA8 LINE L1 5887 5952 -339 23 54 0 0 chr4 103981304 103981341 -80307321 + AT_rich Low_complexity Low_complexity 1 37 0 260 287 11 11 chr4 103981488 103981575 -80307087 - MARNA DNA Mariner -228 358 272 346 293 23 4 chr4 103982723 103982820 -80305842 + MIR SINE MIR 1 96 -112 416 328 127 45 chr4 103982826 103983332 -80305330 - L2 LINE L2 -486 2828 2282 2344 187 35 10 chr4 103983592 103984101 -80304561 + L1MC2 LINE L1 5812 6333 -11 267 334 78 52 chr4 103984998 103985151 -80303511 - MIR SINE MIR -65 143 2 292 264 97 26 chr4 103985667 103985822 -80302840 - MER112 DNA MER1_type -94 166 1 322 346 25 50 chr4 103986247 103986406 -80302256 + MIR3 SINE MIR 32 186 -22 23 0 0 0 chr4 103986605 103986628 -80302034 + AT_rich Low_complexity Low_complexity 1 23 0 2559 30 0 3 chr4 103988038 103988333 -80300329 - AluY SINE Alu -17 294 1 315 266 11 158 chr4 103988739 103988923 -80299739 - MIR SINE MIR -56 206 50 575 305 15 89 chr4 103989540 103989809 -80298853 + MIR SINE MIR 2 250 -12 23 68 0 0 chr4 103992295 103992339 -80296323 + AT_rich Low_complexity Low_complexity 1 44 0 881 222 71 13 chr4 103995077 103995302 -80293360 + MIR SINE MIR 4 241 -21 1469 213 37 7 chr4 103998239 103998535 -80290127 + L1MB1 LINE L1 5842 6146 -22 194 128 26 0 chr4 103998566 103998605 -80290057 + (TA)n Simple_repeat Simple_repeat 1 40 0 290 180 60 60 chr4 104002160 104002260 -80286402 - MIR SINE MIR 0 262 163 1781 209 23 23 chr4 104002613 104003001 -80285661 - MLT1B LTR MaLR -2 388 1 21 0 0 0 chr4 104003134 104003155 -80285507 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 104003901 104003924 -80284738 + AT_rich Low_complexity Low_complexity 1 23 0 401 0 20 0 chr4 104005467 104005516 -80283146 + (CA)n Simple_repeat Simple_repeat 1 50 0 1916 125 0 40 chr4 104005609 104005912 -80282750 + AluSx SINE Alu 1 291 -21 255 328 108 28 chr4 104006646 104007079 -80281583 + HAL1b LINE L1 55 522 -826 706 284 95 31 chr4 104007673 104008156 -80280506 + L1ME LINE L1 3698 4211 -1935 2358 94 0 0 chr4 104008314 104008645 -80280017 + AluSc SINE Alu 1 331 0 410 290 35 72 chr4 104008782 104009158 -80279504 + L1ME LINE L1 4475 4836 -1310 432 254 0 8 chr4 104009242 104009360 -80279302 - L1MA9 LINE L1 -38 6274 6158 394 355 38 35 chr4 104009362 104009680 -80278982 + L1ME LINE L1 4914 5232 -914 1198 259 33 55 chr4 104009703 104010133 -80278529 + L1ME LINE L1 5256 5683 -438 1886 152 55 0 chr4 104011204 104011534 -80277128 - MER7A DNA MER2_type 0 346 1 817 314 112 29 chr4 104011951 104012362 -80276300 + L2 LINE L2 2828 3272 -41 769 59 11 2 chr4 104012362 104012480 -80276182 + L1PA5 LINE L1 6037 6153 -1 1937 155 0 10 chr4 104012707 104013011 -80275651 - AluSx SINE Alu -11 301 1 645 271 210 35 chr4 104013738 104014196 -80274466 + MLT1K LTR MaLR 13 580 -8 1862 113 7 34 chr4 104015927 104016244 -80272418 + AluSx SINE Alu 1 309 0 25 0 0 0 chr4 104016405 104016430 -80272232 + AT_rich Low_complexity Low_complexity 1 25 0 223 328 99 36 chr4 104016961 104017153 -80271509 - L2 LINE L2 -203 3069 2866 277 349 124 8 chr4 104017387 104017516 -80271146 + L2 LINE L2 3128 3271 -1 305 143 0 0 chr4 104017725 104017774 -80270888 + MIR SINE MIR 64 112 -96 29 94 0 0 chr4 104017897 104017982 -80270680 + AT_rich Low_complexity Low_complexity 1 85 0 2814 60 8 0 chr4 104018077 104018429 -80270233 - THE1A LTR MaLR 0 355 1 244 353 12 24 chr4 104019189 104019274 -80269388 - L2 LINE L2 -89 3183 3100 222 380 33 0 chr4 104020145 104020266 -80268396 - MIR SINE MIR -12 250 126 1930 153 10 3 chr4 104022114 104022421 -80266241 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr4 104022875 104022896 -80265766 + AT_rich Low_complexity Low_complexity 1 21 0 258 81 0 0 chr4 104023302 104023339 -80265323 + (CA)n Simple_repeat Simple_repeat 2 38 0 2455 72 0 0 chr4 104023467 104023773 -80264889 + AluY SINE Alu 1 306 -5 182 294 35 24 chr4 104024909 104024994 -80263668 - L2 LINE L2 -1899 1415 1330 247 325 202 20 chr4 104025029 104025232 -80263430 - MIR SINE MIR 0 262 23 195 254 28 56 chr4 104025173 104025244 -80263418 + L2 LINE L2 2758 2826 -488 * 241 229 0 0 chr4 104025582 104025630 -80263032 + CT-rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr4 104025757 104025779 -80262883 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 104026571 104026594 -80262068 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr4 104026770 104026804 -80261858 + AT_rich Low_complexity Low_complexity 1 34 0 1267 165 48 120 chr4 104026991 104027384 -80261278 + MLT1A1 LTR MaLR 1 365 0 1142 208 53 0 chr4 104029235 104029461 -80259201 + MER8 DNA MER2_type 1 238 -1 201 132 0 0 chr4 104029755 104029793 -80258869 + (TC)n Simple_repeat Simple_repeat 2 39 0 262 259 19 0 chr4 104029957 104030011 -80258651 - L2 LINE L2 -9 3304 3250 567 299 73 23 chr4 104030533 104031091 -80257571 - L1MEd LINE L1 -3111 3018 2433 386 280 65 65 chr4 104031171 104031339 -80257323 + L2 LINE L2 2424 2591 -723 964 306 134 21 chr4 104031383 104032000 -80256662 - L1MEd LINE L1 -5284 835 149 2060 142 0 0 chr4 104032118 104032427 -80256235 + AluSx SINE Alu 1 309 -3 194 0 39 0 chr4 104032457 104032483 -80256179 + (TA)n Simple_repeat Simple_repeat 1 27 0 375 258 59 86 chr4 104032570 104032791 -80255871 - MLT1L LTR MaLR -232 383 169 727 223 139 0 chr4 104032823 104032989 -80255673 - MER5A DNA MER1_type 0 189 1 461 256 8 0 chr4 104033072 104033197 -80255465 - L1PB4 LINE L1 -5 6151 6026 5803 114 51 62 chr4 104033197 104034826 -80253836 + pTR5 LTR ERV1 743 2438 0 660 245 0 0 chr4 104034828 104034979 -80253683 - L1PB4 LINE L1 -126 6030 5880 212 325 13 13 chr4 104035225 104035302 -80253360 - MIR SINE MIR -150 112 36 7078 54 3 0 chr4 104035561 104036730 -80251932 + L1PA7 LINE L1 4981 6152 -2 545 322 49 18 chr4 104036748 104037034 -80251628 + L1ME LINE L1 5405 5699 -422 227 225 62 0 chr4 104037494 104037574 -80251088 + L1ME LINE L1 5682 5766 -355 21 0 0 0 chr4 104037890 104037911 -80250751 + AT_rich Low_complexity Low_complexity 1 21 0 230 232 58 0 chr4 104038462 104038531 -80250131 + L1MC5 LINE L1 7835 7907 -54 1937 123 22 0 chr4 104038676 104038953 -80249709 + AluSq SINE Alu 13 295 -18 395 153 73 109 chr4 104039104 104039241 -80249421 + MER94 DNA DNA 3 134 0 785 325 60 46 chr4 104039440 104040113 -80248549 + L2 LINE L2 2638 3313 0 227 204 28 37 chr4 104040114 104040222 -80248440 + (TAAA)n Simple_repeat Simple_repeat 3 109 0 326 283 108 36 chr4 104040241 104040550 -80248112 + L1ME LINE L1 5311 5641 -480 * 1202 318 115 17 chr4 104040536 104041761 -80246901 + L1MEc LINE L1 39 1383 -5013 259 227 0 36 chr4 104041765 104041875 -80246787 + (CATA)n Simple_repeat Simple_repeat 1 106 0 261 236 0 0 chr4 104041885 104041940 -80246722 - MER4-int LTR ERV1 -5433 1165 1111 184 262 19 0 chr4 104041942 104042045 -80246617 + (CA)n Simple_repeat Simple_repeat 2 106 0 1445 219 45 61 chr4 104042120 104042449 -80246213 + L1ME2 LINE L1 4611 4931 -1215 2267 84 27 3 chr4 104042449 104042747 -80245915 + AluY SINE Alu 1 305 -6 1445 219 45 61 chr4 104042747 104042910 -80245752 + L1ME2 LINE L1 4931 5095 -1051 13588 22 0 0 chr4 104042916 104045275 -80243387 + L1PA3 LINE L1 3797 6155 0 1541 238 74 36 chr4 104045342 104045438 -80243224 + L1ME2 LINE L1 5592 5683 -481 222 118 0 0 chr4 104045438 104045472 -80243190 + (TG)n Simple_repeat Simple_repeat 1 34 0 1541 238 74 36 chr4 104045472 104045876 -80242786 + L1ME2 LINE L1 5683 6111 -53 826 178 0 0 chr4 104045878 104046007 -80242655 - FLAM_C SINE Alu -14 129 1 270 0 0 0 chr4 104046026 104046056 -80242606 + (TTTTA)n Simple_repeat Simple_repeat 3 32 0 648 206 0 0 chr4 104046604 104046750 -80241912 + GA-rich Low_complexity Low_complexity 1 146 0 581 182 55 0 chr4 104047722 104047832 -80240830 - AluJb SINE Alu -18 294 179 21 0 0 0 chr4 104047920 104047941 -80240721 + AT_rich Low_complexity Low_complexity 1 21 0 496 308 32 0 chr4 104048241 104048397 -80240265 + MIR SINE MIR 91 251 -11 4808 183 45 6 chr4 104049320 104050212 -80238450 + Tigger1 DNA MER2_type 1 927 -1491 5647 193 2 5 chr4 104050212 104051376 -80237286 + L1PA15 LINE L1 4150 5309 -837 361 100 0 0 chr4 104051378 104051428 -80237234 + AluSc SINE Alu 229 278 -21 5128 124 23 14 chr4 104051428 104052277 -80236385 + L1PA15 LINE L1 5292 6150 -15 3717 139 16 13 chr4 104052292 104052909 -80235753 + Tigger1 DNA MER2_type 913 1531 -887 3438 226 48 53 chr4 104052910 104053159 -80235503 - L1PA12 LINE L1 -4040 3544 3295 195 42 0 0 chr4 104053159 104053183 -80235479 + (TG)n Simple_repeat Simple_repeat 1 24 0 3438 226 48 53 chr4 104053183 104053720 -80234942 - L1PA12 LINE L1 -4289 3295 2757 2141 78 0 0 chr4 104053720 104053989 -80234673 - AluY SINE Alu -8 303 35 3438 226 48 53 chr4 104053989 104054036 -80234626 - L1PA12 LINE L1 -4827 2757 2711 2141 112 7 3 chr4 104054036 104054330 -80234332 - AluSp SINE Alu -18 295 1 3438 226 48 53 chr4 104054330 104054839 -80233823 - L1PA12 LINE L1 -4873 2711 2179 1212 329 26 34 chr4 104055247 104055862 -80232800 - L1PA12 LINE L1 -6177 1397 788 1328 301 65 13 chr4 104056197 104056656 -80232006 + MLT1J LTR MaLR 22 504 -7 21 57 0 0 chr4 104056980 104057015 -80231647 + AT_rich Low_complexity Low_complexity 1 35 0 12891 172 34 10 chr4 104058343 104063696 -80224966 + L1MA3 LINE L1 12 7724 0 460 320 31 33 chr4 104065553 104065893 -80222769 + LTR16A LTR ERVL 22 419 -31 449 342 33 5 chr4 104066026 104066210 -80222452 - MIR SINE MIR -3 259 71 214 149 0 106 chr4 104066336 104066383 -80222279 + L2 LINE L2 3231 3272 0 2133 250 31 60 chr4 104066395 104067244 -80221418 + L1M4 LINE L1 4082 4905 -1241 2028 118 16 3 chr4 104067257 104067563 -80221099 - L1PA10 LINE L1 -4 6164 5855 15364 147 3 10 chr4 104067563 104070151 -80218511 + L1P LINE L1 2101 4671 -1475 5291 174 31 20 chr4 104070149 104070341 -80218321 - L1MA6 LINE L1 -157 6143 5955 * 2044 121 4 0 chr4 104070341 104070653 -80218009 - AluSx SINE Alu 0 313 1 243 0 0 0 chr4 104070662 104070689 -80217973 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 5291 174 31 20 chr4 104070689 104071657 -80217005 - L1MA6 LINE L1 -352 5948 4943 2449 69 0 3 chr4 104071657 104071963 -80216699 - AluY SINE Alu -4 307 3 5291 174 31 20 chr4 104071963 104072632 -80216030 - L1MA6 LINE L1 -1357 4943 4282 997 196 98 4 chr4 104072626 104072861 -80215801 + L1MA6 LINE L1 4050 4306 -1840 * 6942 178 77 49 chr4 104072835 104074512 -80214150 + L1MC3 LINE L1 6056 7779 -6 26 30 0 0 chr4 104074865 104074898 -80213764 + AT_rich Low_complexity Low_complexity 1 33 0 182 377 75 34 chr4 104074946 104075092 -80213570 + L3b LINE CR1 1157 1308 -275 2361 122 5 22 chr4 104076784 104077154 -80211508 + THE1B LTR MaLR 1 364 0 591 302 38 19 chr4 104077937 104078202 -80210460 - L1ME3A LINE L1 -232 5938 5669 234 337 98 43 chr4 104078979 104079163 -80209499 + L2 LINE L2 2824 3017 -255 682 301 34 58 chr4 104079409 104079874 -80208788 + LTR16A1 LTR ERVL 4 457 0 201 74 0 0 chr4 104081436 104081463 -80207199 + (T)n Simple_repeat Simple_repeat 1 27 0 42 36 0 0 chr4 104082191 104082247 -80206415 + AT_rich Low_complexity Low_complexity 1 56 0 634 274 39 102 chr4 104082259 104082749 -80205913 + L1MC4a LINE L1 5466 5924 -1884 358 292 19 86 chr4 104083773 104084040 -80204622 - L2 LINE L2 -9 3304 3056 2457 53 0 3 chr4 104084119 104084421 -80204241 - AluY SINE Alu -10 301 1 360 0 0 0 chr4 104085601 104085641 -80203021 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 2240 82 0 0 chr4 104086727 104087035 -80201627 - AluY SINE Alu 0 308 1 434 333 33 22 chr4 104088859 104089039 -80199623 - MIR SINE MIR -75 187 6 302 291 189 34 chr4 104091401 104091549 -80197113 + MIR3 SINE MIR 21 191 -17 213 159 0 0 chr4 104091662 104091706 -80196956 + (TTCA)n Simple_repeat Simple_repeat 2 45 0 759 196 0 21 chr4 104091976 104092119 -80196543 - FLAM_C SINE Alu -3 140 1 1632 166 30 6 chr4 104092970 104093308 -80195354 + L1M2 LINE L1 4252 4597 -1549 * 1929 194 61 8 chr4 104093303 104093976 -80194686 + L1M2 LINE L1 5020 5728 -584 22 0 0 0 chr4 104094004 104094026 -80194636 + AT_rich Low_complexity Low_complexity 1 22 0 525 344 40 9 chr4 104094321 104094545 -80194117 - MLT1I LTR MaLR 0 409 179 1901 164 46 0 chr4 104094688 104095059 -80193603 + L1MA9 LINE L1 5851 6238 -74 288 119 194 0 chr4 104095111 104095178 -80193484 + L1MA9 LINE L1 6228 6307 -5 22 35 0 0 chr4 104095216 104095245 -80193417 + AT_rich Low_complexity Low_complexity 1 29 0 201 224 0 0 chr4 104095704 104095762 -80192900 + (TCTCTG)n Simple_repeat Simple_repeat 3 60 0 216 226 0 19 chr4 104096476 104096529 -80192133 + (TATATG)n Simple_repeat Simple_repeat 4 55 0 219 205 0 77 chr4 104096636 104096714 -80191948 + T-rich Low_complexity Low_complexity 5 76 0 1808 148 13 28 chr4 104096954 104097271 -80191391 - AluSq SINE Alu -1 312 1 468 0 0 0 chr4 104097313 104097365 -80191297 + (TA)n Simple_repeat Simple_repeat 2 53 0 309 356 47 28 chr4 104097791 104098044 -80190618 - MIR SINE MIR -3 259 2 249 288 209 0 chr4 104098602 104098782 -80189880 - MER102b DNA MER1_type -36 305 78 236 191 0 0 chr4 104099778 104099820 -80188842 + L1MA8 LINE L1 6162 6203 -88 231 347 137 8 chr4 104101911 104102035 -80186627 + L2 LINE L2 3112 3251 -21 632 170 45 0 chr4 104102036 104102148 -80186514 + MSTC LTR MaLR 1 117 -311 345 104 0 0 chr4 104102148 104102196 -80186466 - MLT2A2 LTR ERVL 0 520 473 486 49 0 0 chr4 104102228 104102243 -80186419 + (TG)n Simple_repeat Simple_repeat 1 76 0 486 49 0 0 chr4 104102243 104102304 -80186358 + (TG)n Simple_repeat Simple_repeat 2 62 0 2220 111 131 0 chr4 104102347 104102707 -80185955 - MLT2A2 LTR ERVL -46 407 1 1790 145 0 60 chr4 104102707 104103038 -80185624 + MSTC LTR MaLR 113 423 -5 2850 163 64 2 chr4 104103536 104103893 -80184769 + MER1A DNA MER1_type 1 399 -2303 480 77 0 0 chr4 104103893 104103958 -80184704 + (TA)n Simple_repeat Simple_repeat 1 65 0 2850 163 64 2 chr4 104103958 104104098 -80184564 + MER1A DNA MER1_type 399 529 0 2721 13 0 0 chr4 104104922 104105228 -80183434 + AluYa5 SINE Alu 1 306 -5 186 43 0 0 chr4 104105460 104105483 -80183179 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 556 183 189 37 chr4 104108778 104108942 -80179720 + MER5A DNA MER1_type 1 189 0 301 291 0 63 chr4 104109841 104109968 -80178694 + MER94 DNA DNA 1 119 -15 239 309 53 11 chr4 104109988 104110082 -80178580 + L3b LINE CR1 1233 1330 -253 32 0 0 0 chr4 104110166 104110198 -80178464 + AT_rich Low_complexity Low_complexity 1 32 0 294 215 0 0 chr4 104110786 104110865 -80177797 + G-rich Low_complexity Low_complexity 2 80 0 3927 162 34 38 chr4 104111369 104112105 -80176557 - MER44D DNA MER2_type 0 605 1 1608 132 152 14 chr4 104112420 104112716 -80175946 - MER1B DNA MER1_type 0 337 1 493 275 148 49 chr4 104113102 104113796 -80174866 - LTR50 LTR ERVL -15 691 1 204 323 24 16 chr4 104113799 104113923 -80174739 - L2 LINE L2 -1275 2039 1915 25 0 0 0 chr4 104114215 104114240 -80174422 + AT_rich Low_complexity Low_complexity 1 25 0 209 171 0 0 chr4 104115043 104115078 -80173584 + (CA)n Simple_repeat Simple_repeat 2 36 0 306 279 159 0 chr4 104115259 104115391 -80173271 - MIR SINE MIR -58 150 37 239 238 67 86 chr4 104115754 104115859 -80172803 + L2 LINE L2 3168 3270 -2 6671 130 44 12 chr4 104116142 104117283 -80171379 + Tigger3b DNA MER2_type 55 1231 0 23 54 0 0 chr4 104117682 104117719 -80170943 + AT_rich Low_complexity Low_complexity 1 37 0 24 32 0 0 chr4 104117878 104117909 -80170753 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr4 104118173 104118196 -80170466 + AT_rich Low_complexity Low_complexity 1 23 0 386 320 180 0 chr4 104118231 104118381 -80170281 + MER5A DNA MER1_type 12 188 -1 25 0 0 0 chr4 104118419 104118444 -80170218 + AT_rich Low_complexity Low_complexity 1 25 0 331 218 95 102 chr4 104119290 104119437 -80169225 - MER104 DNA Tc2 -1 179 34 29 0 0 0 chr4 104119443 104119472 -80169190 + AT_rich Low_complexity Low_complexity 1 29 0 646 279 24 24 chr4 104119589 104119840 -80168822 + L1MC3 LINE L1 1 251 -5794 363 268 98 33 chr4 104119867 104120020 -80168642 + L1MC3 LINE L1 498 660 -5904 893 202 37 74 chr4 104120109 104120629 -80168033 + L1MC3 LINE L1 1559 2139 -4425 22 0 0 0 chr4 104120830 104120852 -80167810 + AT_rich Low_complexity Low_complexity 1 22 0 6450 240 33 25 chr4 104120854 104123213 -80165449 + L1MC3 LINE L1 2299 4676 -1888 3576 226 36 23 chr4 104123183 104124132 -80164530 + L1MC3 LINE L1 6265 6552 -199 * 5785 161 32 17 chr4 104124132 104125962 -80162700 + L1MA4 LINE L1 4218 6076 -224 436 94 62 0 chr4 104125965 104126093 -80162569 + (TA)n Simple_repeat Simple_repeat 1 136 0 728 110 17 35 chr4 104126103 104126275 -80162387 + L1MA4 LINE L1 6081 6300 0 23 68 0 0 chr4 104126388 104126432 -80162230 + AT_rich Low_complexity Low_complexity 1 44 0 334 197 0 0 chr4 104126432 104126498 -80162164 + L1MC3 LINE L1 7215 7280 -923 581 0 14 0 chr4 104126510 104126579 -80162083 + (GGAA)n Simple_repeat Simple_repeat 2 71 0 28 48 0 0 chr4 104128049 104128091 -80160571 + AT_rich Low_complexity Low_complexity 1 42 0 2081 124 3 0 chr4 104128217 104128516 -80160146 + AluSx SINE Alu 1 300 -12 308 228 88 35 chr4 104129312 104129426 -80159236 + MIR SINE MIR 87 206 -56 485 309 124 36 chr4 104129671 104130001 -80158661 - MLT1I LTR MaLR -8 401 43 31 26 0 0 chr4 104131038 104131076 -80157586 + AT_rich Low_complexity Low_complexity 1 38 0 22 70 0 0 chr4 104131118 104131161 -80157501 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr4 104132048 104132069 -80156593 + AT_rich Low_complexity Low_complexity 1 21 0 2308 97 21 0 chr4 104132086 104132426 -80156236 - L1PA13 LINE L1 0 6163 5817 182 154 46 15 chr4 104132763 104132828 -80155834 + (TA)n Simple_repeat Simple_repeat 2 68 0 348 388 13 0 chr4 104133205 104133357 -80155305 + L2 LINE L2 2894 3047 -225 345 172 0 0 chr4 104133543 104133607 -80155055 + (TG)n Simple_repeat Simple_repeat 2 65 0 1395 132 45 0 chr4 104134734 104134954 -80153708 - MER30 DNA MER1_type 0 230 1 1322 257 49 6 chr4 104136024 104136390 -80152272 + MLT2F LTR ERVL 282 663 0 290 239 112 112 chr4 104136496 104136764 -80151898 + MLT1G-int LTR MaLR 1445 1712 -23 625 180 102 65 chr4 104136793 104137050 -80151612 + MLT1G LTR MaLR 6 272 -318 21 57 0 0 chr4 104138342 104138377 -80150285 + AT_rich Low_complexity Low_complexity 1 35 0 28 0 0 0 chr4 104138564 104138592 -80150070 + AT_rich Low_complexity Low_complexity 1 28 0 293 309 121 36 chr4 104138848 104139013 -80149649 - L3 LINE CR1 -334 1243 1065 3332 218 73 23 chr4 104140088 104140804 -80147858 + L1ME1 LINE L1 4943 5734 -432 1699 233 0 8 chr4 104140804 104141181 -80147481 - MLT1A2 LTR MaLR 0 374 1 3332 218 73 23 chr4 104141181 104141632 -80147030 + L1ME1 LINE L1 5734 6161 -5 1227 169 85 119 chr4 104142010 104142364 -80146298 + MLT1A2 LTR MaLR 1 342 -32 817 259 58 18 chr4 104142674 104142898 -80145764 + MIR SINE MIR 20 252 -10 420 294 64 5 chr4 104145756 104145943 -80142719 + L1ME4a LINE L1 5629 5826 -295 4456 132 9 21 chr4 104145960 104146507 -80142155 + L1PA16 LINE L1 5409 5946 -220 2530 164 9 7 chr4 104146507 104146934 -80141728 + MSTA LTR MaLR 1 428 0 4456 132 9 21 chr4 104146934 104147149 -80141513 + L1PA16 LINE L1 5946 6162 -4 23 33 0 0 chr4 104147322 104147352 -80141310 + AT_rich Low_complexity Low_complexity 1 30 0 510 285 54 89 chr4 104147845 104148161 -80140501 + L2 LINE L2 3009 3313 0 256 314 35 0 chr4 104148232 104148318 -80140344 + MIR SINE MIR 124 212 -50 200 255 0 0 chr4 104148904 104148951 -80139711 - MIR SINE MIR -147 115 69 21 0 0 0 chr4 104149910 104149931 -80138731 + AT_rich Low_complexity Low_complexity 1 21 0 190 315 82 14 chr4 104150119 104150192 -80138470 - L2 LINE L2 -10 3303 3226 318 300 60 0 chr4 104150776 104150876 -80137786 + L2 LINE L2 3208 3313 0 24 0 0 0 chr4 104150876 104150900 -80137762 + AT_rich Low_complexity Low_complexity 1 24 0 1730 258 92 12 chr4 104150920 104151409 -80137253 - MLT1H LTR MaLR -15 534 7 24 0 0 0 chr4 104151505 104151529 -80137133 + AT_rich Low_complexity Low_complexity 1 24 0 2309 161 13 0 chr4 104151902 104152300 -80136362 - MER57A LTR ERV1 0 403 1 476 334 51 87 chr4 104152352 104152741 -80135921 + L2 LINE L2 2898 3272 0 219 160 80 0 chr4 104153760 104153810 -80134852 - L2 LINE L2 -5 3267 3214 375 328 84 32 chr4 104155255 104155539 -80133123 - L2 LINE L2 -12 3301 3003 190 338 15 0 chr4 104155584 104155652 -80133010 + MIR SINE MIR 85 153 -55 271 360 9 0 chr4 104156081 104156192 -80132470 + MIR SINE MIR 151 262 0 189 336 181 0 chr4 104157187 104157303 -80131359 - L2 LINE L2 -4 3309 3173 1777 157 112 0 chr4 104158285 104158597 -80130065 - MER7A DNA MER2_type -1 345 1 323 287 85 0 chr4 104159258 104159352 -80129310 - MIR3 SINE MIR -47 161 60 913 299 73 19 chr4 104159355 104159723 -80128939 - LTR16C LTR ERVL 0 491 104 2011 112 22 50 chr4 104160822 104161226 -80127436 + THE1A LTR MaLR 1 355 0 388 325 93 7 chr4 104162220 104162371 -80126291 - MIR SINE MIR -48 214 51 853 262 13 18 chr4 104163943 104164168 -80124494 + MIR SINE MIR 4 227 -35 216 0 0 0 chr4 104171391 104171415 -80117247 + (CA)n Simple_repeat Simple_repeat 1 24 0 26269 19 1 0 chr4 104171568 104175454 -80113208 - L1HS LINE L1 0 6155 2267 831 342 40 38 chr4 104177426 104177979 -80110683 + L2 LINE L2 2092 2645 -669 24 67 0 0 chr4 104178038 104178083 -80110579 + AT_rich Low_complexity Low_complexity 1 45 0 477 320 40 11 chr4 104178219 104178394 -80110268 + L2 LINE L2 2570 2749 -565 2364 80 13 0 chr4 104178450 104178752 -80109910 - AluY SINE Alu -5 306 1 346 281 54 65 chr4 104178782 104178967 -80109695 + MLT1J LTR MaLR 117 299 -212 228 327 10 10 chr4 104179486 104179587 -80109075 - MLT1K LTR MaLR -55 533 433 2312 233 52 11 chr4 104179606 104180245 -80108417 - L1MC4a LINE L1 0 7808 7144 489 117 48 0 chr4 104180681 104180784 -80107878 + GA-rich Low_complexity Low_complexity 1 108 0 1804 300 47 29 chr4 104182793 104183779 -80104883 - L1M4 LINE L1 -1814 4332 3330 4033 27 0 0 chr4 104183783 104184257 -80104405 - L1PA3 LINE L1 0 6155 5682 33 0 0 0 chr4 104184257 104184290 -80104372 + AT_rich Low_complexity Low_complexity 1 33 0 1611 144 6 66 chr4 104185972 104186291 -80102371 - AluSx SINE Alu -12 300 1 399 243 100 7 chr4 104186318 104186458 -80102204 + L1ME LINE L1 5578 5730 -391 38 22 0 0 chr4 104186493 104186538 -80102124 + AT_rich Low_complexity Low_complexity 1 45 0 677 296 135 4 chr4 104187029 104187259 -80101403 + MIR SINE MIR 3 262 0 674 214 75 25 chr4 104187443 104187644 -80101018 - MER115 DNA AcHobo -34 659 449 8310 181 46 43 chr4 104187681 104188618 -80100044 + L1MA2 LINE L1 1004 1936 -4648 2250 90 3 10 chr4 104188618 104188918 -80099744 + AluSq SINE Alu 1 298 -15 8310 181 46 43 chr4 104188918 104193553 -80095109 + L1MA2 LINE L1 1936 6578 -6 2191 137 0 0 chr4 104193577 104193884 -80094778 + AluSx SINE Alu 1 307 -5 709 230 11 47 chr4 104194068 104194259 -80094403 - MER63A DNA MER1_type -26 184 1 1585 211 88 96 chr4 104194465 104195059 -80093603 - L1MC5 LINE L1 -46 7984 7398 1535 189 0 36 chr4 104195059 104195361 -80093301 + AluJb SINE Alu 1 291 -21 1585 211 88 96 chr4 104195361 104195608 -80093054 - L1MC5 LINE L1 -632 7398 7150 1396 262 131 49 chr4 104195683 104196189 -80092473 - L1MC5 LINE L1 -410 5821 6445 2026 74 30 0 chr4 104196189 104196487 -80092175 + AluSc SINE Alu 1 306 0 1396 262 131 49 chr4 104196487 104197669 -80090993 - L1MC5 LINE L1 215 6446 5362 5602 186 5 9 chr4 104197679 104199587 -80089075 - L1PB3 LINE L1 0 6154 4256 244 134 122 98 chr4 104199543 104199625 -80089037 + L1 LINE L1 3525 3608 -2538 * 1993 178 33 31 chr4 104199626 104200184 -80088478 - MLT2A2 LTR ERVL 0 554 1 3170 196 11 5 chr4 104200185 104200818 -80087844 + L1 LINE L1 3606 4242 -1904 367 331 76 46 chr4 104200826 104201155 -80087507 - L1MC5 LINE L1 -871 5344 5006 486 278 106 65 chr4 104201273 104202036 -80086626 - L1PB3 LINE L1 -1986 4160 3359 395 269 112 20 chr4 104202220 104202614 -80086048 - L1MC5 LINE L1 -2842 3373 2944 2195 121 0 0 chr4 104202716 104203013 -80085649 + AluSx SINE Alu 1 297 -15 21 0 0 0 chr4 104203057 104203078 -80085584 + AT_rich Low_complexity Low_complexity 1 21 0 523 242 157 28 chr4 104205233 104205411 -80083251 - MIR SINE MIR -34 228 28 275 119 0 34 chr4 104205572 104205631 -80083031 + (CAT)n Simple_repeat Simple_repeat 3 59 0 362 316 76 44 chr4 104205760 104206077 -80082585 - L1MC5 LINE L1 -4689 1707 1381 229 196 0 39 chr4 104207742 104207793 -80080869 + L2 LINE L2 3195 3243 -70 974 162 11 38 chr4 104207794 104207979 -80080683 - FRAM SINE Alu -3 173 1 22 0 0 0 chr4 104207989 104208011 -80080651 + AT_rich Low_complexity Low_complexity 1 22 0 331 191 0 0 chr4 104208011 104208074 -80080588 - FLAM_A SINE Alu 0 133 71 189 211 96 0 chr4 104208080 104208132 -80080530 + L2 LINE L2 3257 3313 0 528 354 6 0 chr4 104208794 104208975 -80079687 + MIR SINE MIR 15 196 -66 3429 70 13 6 chr4 104210099 104210530 -80078132 - L1PA8 LINE L1 -278 5894 5458 1883 50 0 4 chr4 104210530 104210772 -80077890 + L1PA8 LINE L1 5927 6167 -5 3429 70 13 6 chr4 104210772 104210810 -80077852 - L1PA8 LINE L1 -714 5458 5422 21 36 0 0 chr4 104211985 104212013 -80076649 + AT_rich Low_complexity Low_complexity 1 28 0 376 123 27 0 chr4 104212308 104212381 -80076281 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 249 240 168 40 chr4 104215074 104215199 -80073463 - L2 LINE L2 -10 3303 3163 1561 301 121 33 chr4 104215200 104216043 -80072619 - L2 LINE L2 -993 2321 1405 450 0 0 0 chr4 104216291 104216341 -80072321 + (A)n Simple_repeat Simple_repeat 1 50 0 446 261 96 0 chr4 104216408 104216523 -80072139 - L2 LINE L2 0 3313 3188 434 56 0 42 chr4 104216870 104216941 -80071721 + (TTTTG)n Simple_repeat Simple_repeat 2 69 0 37 0 0 0 chr4 104218237 104218274 -80070388 + AT_rich Low_complexity Low_complexity 1 37 0 494 281 61 23 chr4 104218292 104218470 -80070192 - L1ME3A LINE L1 -67 6103 5919 192 364 45 45 chr4 104220749 104220837 -80067825 - L2 LINE L2 -32 3240 3153 180 0 0 0 chr4 104221500 104221520 -80067142 + (A)n Simple_repeat Simple_repeat 1 20 0 242 224 0 13 chr4 104222599 104222675 -80065987 + (TA)n Simple_repeat Simple_repeat 2 76 0 383 248 17 17 chr4 104222710 104222827 -80065835 + L1MB1 LINE L1 6047 6163 -5 784 259 69 19 chr4 104223084 104223300 -80065362 - MIR SINE MIR -27 235 9 238 135 0 0 chr4 104223598 104223635 -80065027 - L2 LINE L2 -1 3312 3276 441 114 23 11 chr4 104224188 104224276 -80064386 + GA-rich Low_complexity Low_complexity 2 90 0 631 239 29 7 chr4 104224353 104224491 -80064171 + MLT2F LTR ERVL 1 141 -522 1025 299 52 18 chr4 104224519 104224907 -80063755 + ERVL-F LTR ERVL 851 1251 -4513 552 266 71 0 chr4 104224920 104225074 -80063588 - MER58A DNA MER1_type 0 224 60 246 258 30 15 chr4 104225115 104225181 -80063481 - MER58A DNA MER1_type -40 67 1 2389 250 36 21 chr4 104225182 104226280 -80062382 + ERVL-F LTR ERVL 1259 2447 -3317 435 263 0 8 chr4 104226295 104226413 -80062249 + ERVL-F LTR ERVL 5634 5750 -14 1028 256 56 16 chr4 104226418 104226956 -80061706 + MLT2F LTR ERVL 1 663 0 277 371 65 53 chr4 104229112 104229226 -80059436 - L2 LINE L2 -1 3271 3153 2195 115 13 0 chr4 104229226 104229530 -80059132 + AluSc SINE Alu 1 308 -1 277 371 65 53 chr4 104229530 104229585 -80059077 - L2 LINE L2 -119 3153 3100 6279 191 57 40 chr4 104229621 104231071 -80057591 - MER52A LTR ERV1 0 1755 51 289 195 92 35 chr4 104231425 104231519 -80057143 - MER52A LTR ERV1 -1195 83 1 211 331 49 49 chr4 104231943 104232085 -80056577 + L2 LINE L2 2308 2449 -865 2707 257 132 43 chr4 104232101 104232283 -80056379 + L2 LINE L2 1859 2023 -1290 2250 117 0 3 chr4 104232283 104232591 -80056071 - AluSq SINE Alu -6 307 1 2707 257 132 43 chr4 104232591 104232789 -80055873 + L2 LINE L2 2023 2202 -1111 2329 121 54 8 chr4 104232789 104233162 -80055500 + MLT1B LTR MaLR 1 390 0 2707 257 132 43 chr4 104233162 104233668 -80054994 + L2 LINE L2 2202 2661 -652 189 0 0 0 chr4 104233668 104233689 -80054973 + (TAA)n Simple_repeat Simple_repeat 2 22 0 2707 257 132 43 chr4 104233689 104234016 -80054646 + L2 LINE L2 2661 3156 -157 2003 160 0 0 chr4 104234018 104234331 -80054331 - AluSq SINE Alu 0 313 1 44 0 0 0 chr4 104234341 104234385 -80054277 + AT_rich Low_complexity Low_complexity 1 44 0 289 331 39 55 chr4 104234571 104234698 -80053964 + L2 LINE L2 3148 3272 0 327 272 89 38 chr4 104236083 104236241 -80052421 - MIR SINE MIR -74 188 23 819 153 18 37 chr4 104236361 104236524 -80052138 + MER106A DNA MER1_type 76 235 -1 23 33 0 0 chr4 104237677 104237707 -80050955 + AT_rich Low_complexity Low_complexity 1 30 0 305 286 0 13 chr4 104240402 104240479 -80048183 - L2 LINE L2 -6 3307 3232 244 367 39 16 chr4 104241526 104241654 -80047008 + L2 LINE L2 2929 3059 -254 591 264 86 83 chr4 104241665 104242002 -80046660 - MLT1J1 LTR MaLR -12 434 97 297 364 25 0 chr4 104242159 104242277 -80046385 + L2 LINE L2 3187 3307 -6 645 254 28 118 chr4 104242426 104242714 -80045948 - MIR SINE MIR 0 262 1 873 181 121 20 chr4 104242742 104242941 -80045721 + MER20 DNA MER1_type 1 219 0 191 314 0 0 chr4 104243447 104243498 -80045164 - MIR SINE MIR -126 82 32 21 57 0 0 chr4 104243568 104243603 -80045059 + AT_rich Low_complexity Low_complexity 1 35 0 442 325 34 34 chr4 104245928 104246162 -80042500 + MLT1J LTR MaLR 229 462 -49 21 0 0 0 chr4 104246526 104246547 -80042115 + AT_rich Low_complexity Low_complexity 1 21 0 230 255 20 0 chr4 104246827 104246878 -80041784 - MIR3 SINE MIR -48 160 109 385 256 13 77 chr4 104246957 104247113 -80041549 - MIR SINE MIR -35 227 82 1355 101 19 14 chr4 104247239 104247447 -80041215 + L1MA1 LINE L1 6064 6272 -30 25 0 0 0 chr4 104247473 104247498 -80041164 + AT_rich Low_complexity Low_complexity 1 25 0 246 262 0 0 chr4 104247592 104247676 -80040986 + (TA)n Simple_repeat Simple_repeat 1 84 0 42 20 0 0 chr4 104247775 104247824 -80040838 + AT_rich Low_complexity Low_complexity 1 49 0 216 264 0 0 chr4 104248446 104248499 -80040163 + GA-rich Low_complexity Low_complexity 2 54 0 1098 193 9 28 chr4 104248872 104249084 -80039578 - AluJb SINE Alu -20 292 85 309 308 8 0 chr4 104249628 104249745 -80038917 - L1MA10 LINE L1 -15 6319 6202 * 1207 113 0 0 chr4 104249742 104249920 -80038742 - L1PA13 LINE L1 -262 5906 5726 1518 89 5 0 chr4 104249920 104250131 -80038531 + L1PA13 LINE L1 5938 6152 -11 1144 230 67 13 chr4 104250146 104251049 -80037613 - L1ME1 LINE L1 -115 6051 4997 2387 130 60 19 chr4 104251049 104251481 -80037181 - LTR7 LTR ERV1 0 450 1 2770 98 11 32 chr4 104251481 104251921 -80036741 - HERVH LTR ERV1 0 7713 7283 6436 129 6 20 chr4 104251925 104252949 -80035713 - HERVH LTR ERV1 -2693 5020 4012 3150 166 4 14 chr4 104252925 104253484 -80035178 - HERVH LTR ERV1 -4108 3605 3053 * 11279 158 14 36 chr4 104253478 104255943 -80032719 - HERVH LTR ERV1 -4979 2734 1 2117 107 53 3 chr4 104255943 104256321 -80032341 - LTR7 LTR ERV1 0 450 10 1189 231 91 10 chr4 104256324 104256921 -80031741 - L1ME LINE L1 -616 5550 4902 1236 223 59 69 chr4 104256921 104257006 -80031656 - MLT1D LTR MaLR -105 400 316 571 77 26 0 chr4 104257006 104257084 -80031578 - MADE1 DNA Mariner 0 80 1 1236 223 59 69 chr4 104257084 104257402 -80031260 - MLT1D LTR MaLR -189 316 1 352 270 94 57 chr4 104257820 104257979 -80030683 - MIR SINE MIR -4 258 94 329 282 117 28 chr4 104258178 104258485 -80030177 - MLT1I LTR MaLR -2 407 19 22 0 0 0 chr4 104259024 104259046 -80029616 + AT_rich Low_complexity Low_complexity 1 22 0 852 192 71 102 chr4 104259310 104259366 -80029296 + MER33 DNA MER1_type 12 68 -2517 2249 108 3 0 chr4 104259366 104259662 -80029000 + AluSp SINE Alu 1 297 -16 852 192 71 102 chr4 104259662 104259928 -80028734 + MER33 DNA MER1_type 68 324 0 244 281 16 0 chr4 104260311 104260375 -80028287 + L2 LINE L2 3249 3313 0 196 245 41 0 chr4 104260983 104261032 -80027630 - MIR SINE MIR -94 168 118 1785 149 3 35 chr4 104261052 104261340 -80027322 + AluSx SINE Alu 3 281 -31 186 43 0 0 chr4 104261343 104261366 -80027296 + (GAAAA)n Simple_repeat Simple_repeat 4 26 0 189 391 131 16 chr4 104261764 104262137 -80026525 - L2 LINE L2 -386 2928 2513 3019 129 34 6 chr4 104262143 104262616 -80026046 - Tigger1 DNA MER2_type 0 2418 1933 * 10399 138 20 18 chr4 104262610 104263089 -80025573 - Tigger1 DNA MER2_type -696 1722 1246 2333 110 3 0 chr4 104263089 104263398 -80025264 + AluSx SINE Alu 1 310 -2 10399 138 20 18 chr4 104263398 104264636 -80024026 - Tigger1 DNA MER2_type -1172 1246 1 544 335 25 21 chr4 104264677 104264913 -80023749 - L2 LINE L2 -853 2461 2225 277 317 54 48 chr4 104265016 104265202 -80023460 - MIR SINE MIR -25 237 51 653 272 66 108 chr4 104266188 104266761 -80021901 - MLT1H LTR MaLR 0 549 1 333 312 154 36 chr4 104267614 104267835 -80020827 + HAL1b LINE L1 37 283 -1065 257 278 35 0 chr4 104267874 104268028 -80020634 + L1MC4 LINE L1 6614 6703 -1339 * 258 235 0 82 chr4 104268018 104268116 -80020546 - L1MC4 LINE L1 -1339 6703 6614 246 326 0 0 chr4 104268122 104268211 -80020451 - L1MC4 LINE L1 -1339 6703 6615 296 194 0 82 chr4 104268228 104268326 -80020336 - L1MC4 LINE L1 -1339 6703 6614 369 244 47 0 chr4 104268330 104268416 -80020246 - L1MC4 LINE L1 -1339 6703 6614 180 250 0 0 chr4 104268527 104268575 -80020087 + (TA)n Simple_repeat Simple_repeat 1 48 0 258 322 0 0 chr4 104268576 104268666 -80019996 - L1MC4 LINE L1 -1339 6703 6614 234 326 0 0 chr4 104268661 104268747 -80019915 + L1MC4 LINE L1 6615 6700 -1342 * 234 326 0 0 chr4 104268729 104268815 -80019847 + L1MC4 LINE L1 6615 6700 -1342 * 242 307 23 0 chr4 104268808 104268896 -80019766 + L1MC4 LINE L1 6614 6703 -1339 * 260 152 0 0 chr4 104268854 104268900 -80019762 - L1MC4 LINE L1 -1339 6703 6658 275 239 23 0 chr4 104268904 104268992 -80019670 - L1MC4 LINE L1 -1339 6703 6614 249 267 44 0 chr4 104268959 104269049 -80019613 + L1MC4 LINE L1 6609 6702 -1340 * 192 259 0 0 chr4 104269052 104269106 -80019556 + (TATATG)n Simple_repeat Simple_repeat 2 55 0 246 271 0 62 chr4 104269106 104269202 -80019460 - L1MC4 LINE L1 -1339 6703 6614 312 221 0 0 chr4 104269207 104269284 -80019378 + (TATATG)n Simple_repeat Simple_repeat 6 82 0 944 240 18 18 chr4 104269323 104269540 -80019122 + HAL1b LINE L1 341 557 -791 481 229 179 81 chr4 104269701 104270121 -80018541 + HAL1b LINE L1 558 1018 -330 212 282 0 14 chr4 104270134 104270205 -80018457 + (TA)n Simple_repeat Simple_repeat 2 71 0 303 228 59 15 chr4 104270206 104270342 -80018320 + HAL1b LINE L1 1021 1162 -186 277 220 0 64 chr4 104270565 104270674 -80017988 + L1ME4a LINE L1 5978 6079 -42 2055 120 19 48 chr4 104271174 104271549 -80017113 - THE1B LTR MaLR 0 364 1 410 318 121 6 chr4 104272059 104272232 -80016430 - MIR SINE MIR -50 212 20 230 209 256 0 chr4 104273116 104273202 -80015460 + L2 LINE L2 3197 3304 -9 2777 139 43 26 chr4 104273285 104273818 -80014844 - L1MC1 LINE L1 -18 6315 5774 180 0 0 0 chr4 104274912 104274932 -80013730 + (TA)n Simple_repeat Simple_repeat 2 21 0 564 172 0 0 chr4 104274960 104275047 -80013615 - Tigger5 DNA MER2_type 0 2323 2237 295 200 20 0 chr4 104275097 104275147 -80013515 - Tigger5 DNA MER2_type 0 2323 2273 243 161 0 113 chr4 104275138 104275200 -80013462 - Tigger5 DNA MER2_type -2268 55 1 * 201 26 79 0 chr4 104278466 104278504 -80010158 + (TTG)n Simple_repeat Simple_repeat 2 42 0 26 0 0 0 chr4 104279191 104279217 -80009445 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr4 104280627 104280648 -80008014 + AT_rich Low_complexity Low_complexity 1 21 0 1764 234 105 22 chr4 104281497 104282128 -80006534 + L1ME1 LINE L1 4616 5298 -848 6321 89 2 0 chr4 104282132 104283490 -80005172 - L1PA14 LINE L1 -3 6158 4808 5741 163 17 9 chr4 104283490 104284416 -80004246 - L1PA12 LINE L1 -6644 937 4 2880 204 17 14 chr4 104284428 104285061 -80003601 + L1ME1 LINE L1 5312 5946 -220 1258 145 5 10 chr4 104285062 104285269 -80003393 + MER2 DNA MER2_type 1 206 -139 23 0 0 0 chr4 104285296 104285319 -80003343 + AT_rich Low_complexity Low_complexity 1 23 0 453 237 125 7 chr4 104285377 104285585 -80003077 + L1MA10 LINE L1 5942 6327 -5 1554 231 117 28 chr4 104285591 104285816 -80002846 + L1ME2 LINE L1 5427 5631 -533 1342 181 0 8 chr4 104285816 104286054 -80002608 + MER46A DNA MER2_type 1 236 0 1554 231 117 28 chr4 104286054 104286392 -80002270 + L1ME2 LINE L1 5631 6040 -124 1028 177 76 0 chr4 104286385 104286583 -80002079 - L1PB4 LINE L1 -11 6145 5933 * 295 203 29 0 chr4 104286582 104286651 -80002011 + L1ME2 LINE L1 6085 6155 -9 * 322 167 24 0 chr4 104286716 104286800 -80001862 + (TA)n Simple_repeat Simple_repeat 2 87 0 812 267 41 0 chr4 104286810 104287102 -80001560 + L1MB8 LINE L1 4235 4538 -1608 * 4450 205 31 6 chr4 104287100 104288037 -80000625 - L1 LINE L1 -1012 5134 4167 2139 123 10 0 chr4 104288037 104288337 -80000325 - AluSq SINE Alu -10 303 1 4450 205 31 6 chr4 104288337 104288442 -80000220 - L1 LINE L1 -1979 4167 4066 2471 73 116 20 chr4 104288471 104288921 -79999741 + LTR14B LTR ERVK 1 608 0 45021 55 27 17 chr4 104288921 104294617 -79994045 + HERVK14 LTR ERVK 1 5813 -132 352 158 0 18 chr4 104294617 104294674 -79993988 + MER41C LTR ERV1 6 61 -493 45021 55 27 17 chr4 104294674 104294809 -79993853 + HERVK14 LTR ERVK 5813 5945 0 2283 86 158 8 chr4 104294812 104295260 -79993402 + LTR14B LTR ERVK 1 608 0 7103 237 43 17 chr4 104295261 104297033 -79991629 - L1 LINE L1 -2136 3834 1900 2259 113 7 0 chr4 104297033 104297342 -79991320 - AluSq SINE Alu -2 311 1 7103 237 43 17 chr4 104297342 104298120 -79990542 - L1 LINE L1 -4070 1900 1144 2701 200 57 15 chr4 104298141 104298356 -79990306 + L1MB8 LINE L1 4573 4778 -1368 2259 202 32 18 chr4 104298356 104298852 -79989810 + MLT1D LTR MaLR 1 503 -2 2701 200 57 15 chr4 104298852 104299355 -79989307 + L1MB8 LINE L1 4778 5321 -825 6728 208 36 21 chr4 104299367 104302166 -79986496 + L1MA4 LINE L1 8 2824 -3504 * 6839 173 29 8 chr4 104302163 104302545 -79986117 + L1MA4 LINE L1 4102 4475 -2007 300 91 0 0 chr4 104302545 104302589 -79986073 + (CA)n Simple_repeat Simple_repeat 1 44 0 6839 173 29 8 chr4 104302589 104302646 -79986016 + L1MA4 LINE L1 4475 4529 -1953 1718 181 0 20 chr4 104302646 104302945 -79985717 + AluJb SINE Alu 1 293 -19 6839 173 29 8 chr4 104302945 104304829 -79983833 + L1MA4 LINE L1 4529 6478 -4 1325 166 75 23 chr4 104304818 104305125 -79983537 + L1MB8 LINE L1 5312 5634 -544 * 620 167 50 10 chr4 104305130 104305289 -79983373 + L1MB8 LINE L1 5828 5992 -209 294 365 102 47 chr4 104305440 104306016 -79982646 - L2 LINE L2 -2215 1099 492 25 0 0 0 chr4 104306248 104306273 -79982389 + AT_rich Low_complexity Low_complexity 1 25 0 251 293 0 0 chr4 104306737 104306795 -79981867 - L2 LINE L2 0 3272 3215 27 0 0 0 chr4 104306954 104306981 -79981681 + AT_rich Low_complexity Low_complexity 1 27 0 3851 140 10 63 chr4 104308436 104309164 -79979498 + LTR8 LTR ERV1 1 689 -2 21 0 0 0 chr4 104311077 104311098 -79977564 + AT_rich Low_complexity Low_complexity 1 21 0 3508 134 22 4 chr4 104311383 104311927 -79976735 - MER41C LTR ERV1 0 554 1 41 0 0 0 chr4 104311978 104312019 -79976643 + AT_rich Low_complexity Low_complexity 1 41 0 3039 169 16 81 chr4 104312131 104312870 -79975792 + LTR8 LTR ERV1 1 691 0 341 346 15 34 chr4 104313014 104313283 -79975379 - L1M4 LINE L1 -1266 4863 4600 293 203 43 0 chr4 104313324 104313393 -79975269 + MER116 DNA Mariner 2 73 -7 413 194 43 91 chr4 104313445 104313631 -79975031 - L1M4 LINE L1 -1620 4509 4333 986 177 64 56 chr4 104313638 104313887 -79974775 + MSTB1 LTR MaLR 1 251 -181 667 278 66 81 chr4 104314265 104314288 -79974374 - L1MEd LINE L1 -868 1622 1600 7466 68 25 7 chr4 104314288 104315277 -79973385 - LTR13 LTR ERVK 0 1007 1 667 278 66 81 chr4 104315277 104316000 -79972662 - L1MEd LINE L1 -890 1600 898 8063 6 0 0 chr4 104316003 104317096 -79971566 + L1HS LINE L1 5063 6155 0 31 0 0 0 chr4 104317096 104317127 -79971535 + AT_rich Low_complexity Low_complexity 1 31 0 3766 22 0 0 chr4 104317127 104317783 -79970879 + L1PA4 LINE L1 5476 6167 0 222 56 0 28 chr4 104317783 104317819 -79970843 + (TAAAA)n Simple_repeat Simple_repeat 1 65 0 409 72 43 0 chr4 104317842 104317911 -79970751 + A-rich Low_complexity Low_complexity 2 73 0 840 200 0 0 chr4 104317913 104318073 -79970589 - MER58 DNA MER1_type -3 2417 2258 1687 141 62 25 chr4 104318076 104318430 -79970232 + L1MA9 LINE L1 5946 6312 0 1528 168 64 9 chr4 104318439 104318785 -79969877 + Charlie1 DNA MER1_type 2261 2625 -136 23 0 0 0 chr4 104318795 104318818 -79969844 + AT_rich Low_complexity Low_complexity 1 23 0 205 235 20 39 chr4 104318848 104318950 -79969712 + T-rich Low_complexity Low_complexity 2 101 0 888 200 20 0 chr4 104319138 104319333 -79969329 - MER3 DNA MER1_type -10 199 1 390 302 84 36 chr4 104319565 104319840 -79968822 - L1MEd LINE L1 -5764 355 68 297 272 32 16 chr4 104320535 104320660 -79968002 - L1ME LINE L1 -317 5804 5678 21 0 0 0 chr4 104320805 104320826 -79967836 + AT_rich Low_complexity Low_complexity 1 21 0 233 289 44 33 chr4 104321224 104321314 -79967348 + L2 LINE L2 3206 3296 -17 356 121 0 0 chr4 104321416 104321474 -79967188 + L1MCa LINE L1 2141 2198 -4228 468 177 0 26 chr4 104322250 104322363 -79966299 + L1MCa LINE L1 3698 3807 -2619 1846 163 30 0 chr4 104322371 104322708 -79965954 - Tigger1 DNA MER2_type -2071 347 1 218 167 0 0 chr4 104323569 104323605 -79965057 - L2 LINE L2 -5 3267 3232 680 119 10 0 chr4 104324328 104324429 -79964233 + AluJ/FLAM SINE Alu 1 102 -210 2219 98 26 50 chr4 104324433 104324769 -79963893 + THE1C LTR MaLR 8 336 -39 2014 133 17 7 chr4 104324769 104325069 -79963593 - AluSx SINE Alu -9 303 1 2219 98 26 50 chr4 104325069 104325109 -79963553 + THE1C LTR MaLR 336 375 0 1528 92 0 163 chr4 104325109 104325447 -79963215 + THE1C-int LTR MaLR 1 283 -1297 308 332 123 34 chr4 104325498 104325733 -79962929 - L2 LINE L2 -510 2804 2549 228 35 0 0 chr4 104326544 104326573 -79962089 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 293 374 36 7 chr4 104327711 104327850 -79960812 - MIR SINE MIR -118 144 2 2399 104 0 0 chr4 104328300 104328607 -79960055 - AluSx SINE Alu -5 307 1 277 287 115 25 chr4 104328838 104328995 -79959667 - MLT1H1 LTR MaLR 0 555 385 227 310 0 0 chr4 104329530 104329588 -79959074 + MIR SINE MIR 73 130 -78 1386 229 26 9 chr4 104329588 104329937 -79958725 + MLT1A2 LTR MaLR 1 355 -19 22 88 0 0 chr4 104330003 104330060 -79958602 + AT_rich Low_complexity Low_complexity 1 57 0 5314 250 35 21 chr4 104330249 104330554 -79958108 + L1MC1 LINE L1 2629 2928 -3218 2398 43 0 3 chr4 104330554 104330872 -79957790 - AluY SINE Alu 0 317 1 5314 250 35 21 chr4 104330872 104331101 -79957561 + L1MC1 LINE L1 2928 3152 -2994 1966 154 13 3 chr4 104331101 104331407 -79957255 + AluSx SINE Alu 1 309 -3 5314 250 35 21 chr4 104331407 104331707 -79956955 + L1MC1 LINE L1 3152 3447 -2699 2348 108 3 0 chr4 104331707 104332014 -79956648 + AluSp SINE Alu 1 308 -5 5314 250 35 21 chr4 104332014 104332608 -79956054 + L1MC1 LINE L1 3447 4032 -2114 2656 42 3 0 chr4 104332608 104332918 -79955744 - AluY SINE Alu 0 311 1 5314 250 35 21 chr4 104332918 104333759 -79954903 + L1MC1 LINE L1 4032 4955 -1191 180 0 0 0 chr4 104333759 104333779 -79954883 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 5314 250 35 21 chr4 104333779 104333926 -79954736 + L1MC1 LINE L1 4955 5099 -1047 1733 167 83 35 chr4 104333983 104334506 -79954156 + MLT2A2 LTR ERVL 1 554 0 5414 190 14 3 chr4 104334902 104336087 -79952575 + L1MC1 LINE L1 5122 6319 -14 369 0 0 0 chr4 104336389 104336430 -79952232 + (CA)n Simple_repeat Simple_repeat 1 41 0 292 299 112 9 chr4 104337340 104337447 -79951215 - L2 LINE L2 -18 3254 3137 627 264 203 11 chr4 104338242 104338503 -79950159 + L2 LINE L2 2999 3309 -4 266 291 24 61 chr4 104338647 104338812 -79949850 + L2 LINE L2 2896 3054 -218 3161 183 12 25 chr4 104338845 104339523 -79949139 - LTR1 LTR ERV1 -116 669 1 223 190 52 35 chr4 104339581 104339639 -79949023 + L2 LINE L2 3169 3227 -86 3422 96 28 0 chr4 104340000 104340499 -79948163 + LTR10D LTR ERV1 1 513 0 1533 281 74 73 chr4 104340525 104341705 -79946957 + HERVI LTR ERV1 24 1204 -6581 25235 208 39 36 chr4 104341886 104348504 -79940158 + HERVI LTR ERV1 1132 7769 -16 3517 102 6 2 chr4 104348520 104349031 -79939631 + LTR10D LTR ERV1 1 513 0 1137 229 103 79 chr4 104349193 104349687 -79938975 + MLT1F LTR MaLR 37 542 0 283 273 0 0 chr4 104351625 104351680 -79936982 + L2 LINE L2 3250 3304 -9 556 80 11 11 chr4 104351687 104351775 -79936887 + (GGAA)n Simple_repeat Simple_repeat 2 89 0 198 0 0 0 chr4 104352180 104352202 -79936460 + (A)n Simple_repeat Simple_repeat 1 22 0 309 51 0 0 chr4 104354642 104354681 -79933981 + (CA)n Simple_repeat Simple_repeat 2 40 0 2277 158 50 19 chr4 104354686 104355105 -79933557 - Tigger2a DNA MER2_type -1 433 2 246 232 64 0 chr4 104355105 104355230 -79933432 + (TA)n Simple_repeat Simple_repeat 1 133 0 24 0 0 0 chr4 104355230 104355254 -79933408 + AT_rich Low_complexity Low_complexity 1 24 0 1907 166 0 10 chr4 104355439 104355747 -79932915 + AluJb SINE Alu 1 305 -7 33 25 0 0 chr4 104356174 104356214 -79932448 + AT_rich Low_complexity Low_complexity 1 40 0 341 277 84 48 chr4 104356269 104356435 -79932227 + MLT2B1 LTR ERVL 83 254 -266 2142 114 29 10 chr4 104356435 104356742 -79931920 - AluSq SINE Alu 0 313 1 3712 199 44 58 chr4 104356745 104357625 -79931037 + ERVL LTR ERVL 116 983 -4781 942 70 78 0 chr4 104358577 104358706 -79929956 - MER85 DNA T2_type 0 139 1 494 217 135 53 chr4 104359179 104359386 -79929276 - MLT2B1 LTR ERVL -272 248 25 764 278 68 19 chr4 104359388 104359651 -79929011 - L2 LINE L2 -290 3023 2731 198 197 53 79 chr4 104359987 104360063 -79928599 - MIR SINE MIR -60 202 129 2142 112 33 7 chr4 104361956 104362260 -79926402 + AluSx SINE Alu 1 312 0 184 360 35 0 chr4 104362491 104362577 -79926085 + L3 LINE CR1 1435 1523 -54 300 344 74 8 chr4 104362917 104363039 -79925623 + L2 LINE L2 3126 3255 -17 416 288 70 59 chr4 104367512 104367649 -79921013 + L1MEc LINE L1 44 178 -6218 2218 99 0 3 chr4 104367649 104367931 -79920731 + AluSp SINE Alu 1 281 -32 887 49 0 42 chr4 104367932 104368074 -79920588 + (GAAA)n Simple_repeat Simple_repeat 4 139 0 416 288 70 59 chr4 104368074 104368208 -79920454 + L1MEc LINE L1 178 309 -6087 21 36 0 0 chr4 104368208 104368236 -79920426 + AT_rich Low_complexity Low_complexity 1 28 0 416 288 70 59 chr4 104368236 104368830 -79919832 + L1MEc LINE L1 309 931 -5465 1874 196 3 0 chr4 104369050 104369361 -79919301 + AluJb SINE Alu 1 312 0 20602 119 17 26 chr4 104369456 104373919 -79914743 + L1P3 LINE L1 2 4509 -1952 395 181 15 55 chr4 104373920 104374050 -79914612 + LTR10A LTR ERV1 437 609 0 4654 224 68 41 chr4 104374050 104375587 -79913075 + HERVI LTR ERV1 2 1580 -6205 4725 91 57 18 chr4 104375637 104376128 -79912534 + HERV17 LTR ERV1 716 1186 -5710 438 20 0 0 chr4 104376128 104376179 -79912483 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 4725 91 57 18 chr4 104376179 104376639 -79912023 + HERV17 LTR ERV1 1186 1720 -5176 315 238 167 0 chr4 104376641 104376725 -79911937 - LTR8 LTR ERV1 -438 253 156 11250 155 7 18 chr4 104376725 104379869 -79908793 + Harlequin LTR ERV1 1815 6623 -26 335 274 189 0 chr4 104379896 104380108 -79908554 + LTR10A LTR ERV1 1 252 -357 1516 161 76 13 chr4 104380150 104380454 -79908208 + LTR10A LTR ERV1 181 503 -106 7981 88 12 0 chr4 104380472 104382404 -79906258 + L1PA7 LINE L1 4181 6150 -4 4570 150 24 11 chr4 104382440 104383327 -79905335 + L1PA16 LINE L1 5262 6166 0 354 172 39 86 chr4 104383558 104383634 -79905028 + L1M4 LINE L1 2304 2373 -3773 1722 192 0 7 chr4 104383634 104383931 -79904731 + AluJo SINE Alu 1 295 -17 354 172 39 86 chr4 104383931 104383982 -79904680 + L1M4 LINE L1 2373 2425 -3721 1931 155 10 10 chr4 104384562 104384865 -79903797 + AluJo SINE Alu 1 303 -9 189 371 21 31 chr4 104385058 104385155 -79903507 + L2 LINE L2 1860 1955 -1359 1194 268 29 18 chr4 104385207 104385501 -79903161 + MER69 DNA AcHobo 1 301 -2225 2369 103 133 5 chr4 104385501 104385878 -79902784 - MSTA LTR MaLR -3 425 1 1194 268 29 18 chr4 104385878 104385923 -79902739 + MER69 DNA AcHobo 301 344 -2182 262 298 0 29 chr4 104386307 104386411 -79902251 + MER69 DNA AcHobo 1845 1945 -581 1783 255 89 6 chr4 104386444 104386982 -79901680 - MLT1G LTR MaLR -7 583 1 923 223 196 8 chr4 104386982 104387379 -79901283 + MER69 DNA AcHobo 1979 2450 -76 356 198 0 12 chr4 104388524 104388610 -79900052 + (TA)n Simple_repeat Simple_repeat 2 86 0 216 294 0 0 chr4 104388923 104388974 -79899688 - L2 LINE L2 0 3313 3263 481 219 35 35 chr4 104389055 104389169 -79899493 + L2 LINE L2 3200 3313 0 184 411 16 8 chr4 104389410 104389539 -79899123 - L2 LINE L2 -555 2759 2630 494 353 114 30 chr4 104390486 104390950 -79897712 - L2 LINE L2 -685 2629 2127 359 248 105 9 chr4 104391055 104391160 -79897502 + L2 LINE L2 3199 3313 0 307 179 15 0 chr4 104391297 104391364 -79897298 - Looper DNA T2_type -1419 139 72 688 231 38 43 chr4 104391438 104391624 -79897038 + MIR SINE MIR 32 216 -46 1189 226 56 41 chr4 104391631 104392025 -79896637 + Looper DNA T2_type 793 1192 -366 536 188 14 35 chr4 104392025 104392169 -79896493 + Looper DNA T2_type 1394 1534 -24 225 94 0 0 chr4 104392202 104392234 -79896428 + (A)n Simple_repeat Simple_repeat 1 32 0 291 285 41 8 chr4 104392754 104392877 -79895785 - LTR67 LTR ERVL 0 557 431 1858 262 66 36 chr4 104393276 104394231 -79894431 + L2 LINE L2 2336 3312 -1 685 326 83 21 chr4 104394937 104395418 -79893244 + MLT1J LTR MaLR 1 511 0 472 168 53 0 chr4 104395584 104395679 -79892983 + U6 snRNA snRNA 1 100 -7 5290 181 17 8 chr4 104395679 104397670 -79890992 + L1PA16 LINE L1 4016 6031 -135 18792 94 40 3 chr4 104397670 104400281 -79888381 - Charlie3 DNA MER1_type -4 2706 1 5290 181 17 8 chr4 104400281 104400418 -79888244 + L1PA16 LINE L1 6031 6165 -1 24 53 0 0 chr4 104400537 104400575 -79888087 + AT_rich Low_complexity Low_complexity 1 38 0 991 308 39 23 chr4 104400575 104400965 -79887697 + L2 LINE L2 2234 2629 -685 1478 221 59 34 chr4 104400969 104401385 -79887277 + MLT1C LTR MaLR 6 435 -32 927 164 69 161 chr4 104401385 104401764 -79886898 + MER2 DNA MER2_type 1 344 0 1478 221 59 34 chr4 104401764 104401790 -79886872 + MLT1C LTR MaLR 435 459 -8 817 247 90 92 chr4 104401796 104402411 -79886251 + L2 LINE L2 2621 3255 -58 1358 200 22 9 chr4 104402411 104402731 -79885931 - MER33 DNA MER1_type 0 324 1 817 247 90 92 chr4 104402731 104402790 -79885872 + L2 LINE L2 3255 3313 0 9372 167 23 14 chr4 104404602 104404986 -79883676 - L1PBa LINE L1 -1877 4985 4606 280 43 21 21 chr4 104404986 104405033 -79883629 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 9372 167 23 14 chr4 104405033 104405055 -79883607 - L1PBa LINE L1 -2256 4606 4586 2500 80 0 6 chr4 104405055 104405368 -79883294 - AluY SINE Alu 0 311 1 9372 167 23 14 chr4 104405368 104408524 -79880138 - L1PBa LINE L1 -2276 4586 1395 644 259 11 5 chr4 104408526 104408715 -79879947 - L1PBa LINE L1 -6668 195 6 2086 144 0 6 chr4 104409718 104410030 -79878632 - AluSx SINE Alu -2 310 1 250 225 272 53 chr4 104410492 104410661 -79878001 + MER34 LTR ERV1 4 108 -434 1160 186 47 92 chr4 104410735 104411216 -79877446 + LTR56 LTR ERV1 1 437 0 777 266 40 27 chr4 104411224 104411521 -79877141 + MER39 LTR ERV1 407 707 0 303 355 85 5 chr4 104412491 104412680 -79875982 - MIR SINE MIR 0 262 59 254 243 271 45 chr4 104412710 104412887 -79875775 - MIR SINE MIR 0 262 46 26 30 0 0 chr4 104414086 104414119 -79874543 + AT_rich Low_complexity Low_complexity 1 33 0 181 301 84 59 chr4 104414344 104414547 -79874115 - L2 LINE L2 -76 3237 3030 1367 165 0 9 chr4 104415708 104415926 -79872736 + AluJb SINE Alu 59 274 -38 456 19 0 0 chr4 104415928 104415981 -79872681 + (TC)n Simple_repeat Simple_repeat 1 53 0 252 0 0 0 chr4 104415980 104416008 -79872654 + (CA)n Simple_repeat Simple_repeat 1 28 0 * 188 279 0 0 chr4 104417281 104417324 -79871338 - L2 LINE L2 0 3272 3230 * 710 294 60 81 chr4 104417316 104417407 -79871255 + L2 LINE L2 2659 2750 -563 923 215 43 0 chr4 104417407 104417616 -79871046 + MER20 DNA MER1_type 2 219 0 710 294 60 81 chr4 104417616 104417940 -79870722 + L2 LINE L2 2750 3074 -239 1486 187 153 7 chr4 104417940 104418234 -79870428 + MER1B DNA MER1_type 1 337 0 710 294 60 81 chr4 104418234 104418377 -79870285 + L2 LINE L2 3074 3218 -95 587 301 17 50 chr4 104418606 104418845 -79869817 - MIR SINE MIR -18 244 14 7560 156 16 10 chr4 104419968 104422074 -79866588 + L1PA13 LINE L1 4041 6160 -3 242 143 82 0 chr4 104422342 104422391 -79866271 + L1MC4 LINE L1 6650 6702 -1340 388 230 138 22 chr4 104423022 104423257 -79865405 + MER46C DNA MER2_type 34 327 -11 2456 126 8 5 chr4 104423906 104424280 -79864382 - THE1C LTR MaLR 0 375 1 467 247 119 60 chr4 104424749 104424984 -79863678 - MIR SINE MIR -8 254 6 1510 183 45 7 chr4 104425059 104425348 -79863314 + AluJb SINE Alu 1 300 -12 1015 226 58 30 chr4 104425553 104425568 -79863094 + MSTD LTR MaLR 3 16 -380 2094 159 86 8 chr4 104425568 104425965 -79862697 + MSTA LTR MaLR 1 428 0 1015 226 58 30 chr4 104425965 104426303 -79862359 + MSTD LTR MaLR 16 396 0 294 280 54 11 chr4 104426689 104426782 -79861880 + L2 LINE L2 3171 3267 -46 26 0 0 0 chr4 104426836 104426862 -79861800 + AT_rich Low_complexity Low_complexity 1 26 0 705 237 104 62 chr4 104429211 104429624 -79859038 + MER57A LTR ERV1 1 403 0 267 231 0 0 chr4 104429728 104429780 -79858882 - LTR16B LTR ERVL 0 464 413 732 243 153 36 chr4 104429787 104430280 -79858382 + MLT1E LTR MaLR 8 593 0 890 262 205 7 chr4 104430298 104430600 -79858062 - LTR16B LTR ERVL -93 371 10 489 343 74 28 chr4 104431411 104431802 -79856860 + ERVL LTR ERVL 1402 1810 -3954 432 344 26 0 chr4 104431853 104432007 -79856655 + ERVL LTR ERVL 1908 2065 -3699 370 333 44 36 chr4 104432043 104432295 -79856367 + ERVL LTR ERVL 2150 2403 -3361 670 313 87 14 chr4 104433082 104433357 -79855305 + LTR16C LTR ERVL 195 489 -2 426 278 117 38 chr4 104433374 104433820 -79854842 + L1ME2 LINE L1 1874 2354 -4042 977 264 92 35 chr4 104433986 104434968 -79853694 + L1ME2 LINE L1 5175 6233 -6 210 355 87 22 chr4 104435528 104435666 -79852996 + L2 LINE L2 2698 2844 -470 257 75 25 0 chr4 104435723 104435763 -79852899 + (CA)n Simple_repeat Simple_repeat 1 41 0 359 266 284 0 chr4 104435834 104435939 -79852723 + L1MEc LINE L1 3740 3793 -2422 1657 67 9 27 chr4 104435939 104436164 -79852498 + AluY SINE Alu 85 305 -6 359 266 284 0 chr4 104436164 104436275 -79852387 + L1MEc LINE L1 3793 3849 -2366 7303 36 63 0 chr4 104436275 104437215 -79851447 - L1PA5 LINE L1 -1 6153 5202 359 266 284 0 chr4 104437215 104437468 -79851194 + L1MEc LINE L1 3849 3978 -2237 4878 108 0 16 chr4 104437468 104438034 -79850628 - LTR8 LTR ERV1 0 691 137 2739 0 0 0 chr4 104438034 104438326 -79850336 + AluYa5 SINE Alu 1 292 -19 4878 108 0 16 chr4 104438326 104438461 -79850201 - LTR8 LTR ERV1 -554 137 1 359 266 284 0 chr4 104438461 104438681 -79849981 + L1MEc LINE L1 3978 4492 -1723 896 287 72 17 chr4 104438821 104439197 -79849465 + L1M3e LINE L1 125 833 -6656 * 1730 314 48 20 chr4 104439194 104439827 -79848835 + L1M3e LINE L1 1374 2075 -5491 734 152 15 8 chr4 104439826 104439958 -79848704 - L1M2 LINE L1 -5377 1472 1340 * 2850 200 38 40 chr4 104439972 104440899 -79847763 + L1M3e LINE L1 3238 4161 -3404 1491 80 9 38 chr4 104440899 104441112 -79847550 + AluY SINE Alu 85 291 -20 2850 200 38 40 chr4 104441112 104441411 -79847251 + L1M3e LINE L1 4161 4459 -3106 566 366 71 55 chr4 104441437 104442040 -79846622 + L1MA4 LINE L1 10 622 -6227 2399 96 0 3 chr4 104442122 104442436 -79846226 + AluSq SINE Alu 1 313 0 252 322 33 50 chr4 104442503 104442683 -79845979 + L1MA4 LINE L1 708 884 -5965 1320 249 45 54 chr4 104442876 104444137 -79844525 + L1MA4 LINE L1 999 2205 -4643 725 67 19 0 chr4 104444134 104444239 -79844423 - L1P LINE L1 -1739 4407 4301 * 6965 54 5 6 chr4 104444235 104446068 -79842594 + L1PA7 LINE L1 4198 6140 -14 31 0 0 0 chr4 104446068 104446099 -79842563 + AT_rich Low_complexity Low_complexity 1 31 0 10943 213 26 18 chr4 104446102 104446419 -79842243 + L1 LINE L1 2510 2823 -3323 2108 116 0 27 chr4 104446419 104446720 -79841942 + AluSx SINE Alu 1 293 -19 10943 213 26 18 chr4 104446720 104447559 -79841103 + L1 LINE L1 2823 3654 -2492 285 75 0 0 chr4 104447559 104447599 -79841063 + (CA)n Simple_repeat Simple_repeat 1 40 0 10943 213 26 18 chr4 104447599 104449221 -79839441 + L1 LINE L1 3654 5312 -834 3211 188 10 3 chr4 104449221 104449907 -79838755 + L1MA4 LINE L1 3769 4459 -2389 1823 188 21 0 chr4 104449908 104450297 -79838365 + L1MA4 LINE L1 5081 5477 -1371 567 157 0 0 chr4 104450291 104450380 -79838282 + L1MA4 LINE L1 6608 6696 -306 * 49 18 0 0 chr4 104450380 104450436 -79838226 + AT_rich Low_complexity Low_complexity 1 56 0 924 149 10 20 chr4 104450436 104450631 -79838031 + L1MA4 LINE L1 6809 7001 -1 5623 99 16 0 chr4 104450631 104451435 -79837227 + L1PA13 LINE L1 5344 6160 -3 255 339 123 8 chr4 104452461 104452591 -79836071 - L2 LINE L2 -6 3266 3122 1891 188 17 3 chr4 104452623 104452979 -79835683 - MLT1A1 LTR MaLR 0 365 5 303 191 32 43 chr4 104453421 104453515 -79835147 - L2 LINE L2 -1615 1699 1607 273 188 0 0 chr4 104453649 104453697 -79834965 - MLT2B1 LTR ERVL -8 512 465 396 207 12 0 chr4 104453724 104453806 -79834856 - MLT2B2 LTR ERVL -41 474 392 1265 219 26 0 chr4 104453962 104454273 -79834389 - MER33 DNA MER1_type 0 324 6 248 170 57 0 chr4 104454577 104454630 -79834032 + MADE1 DNA Mariner 25 80 0 2481 148 71 24 chr4 104455669 104456177 -79832485 - L1MA7 LINE L1 -158 6133 5602 * 4511 240 18 106 chr4 104456163 104457838 -79830824 - L1M3b LINE L1 -4753 1528 1 360 250 88 56 chr4 104459224 104459384 -79829278 + MIR SINE MIR 29 193 -69 2099 111 0 29 chr4 104459417 104459733 -79828929 + AluSq SINE Alu 1 307 -6 377 310 0 9 chr4 104460056 104460169 -79828493 + (CCA)n Simple_repeat Simple_repeat 3 114 0 399 92 0 0 chr4 104461342 104461407 -79827255 + (TC)n Simple_repeat Simple_repeat 2 66 0 27 0 0 0 chr4 104462566 104462593 -79826069 + AT_rich Low_complexity Low_complexity 1 27 0 2500 103 30 11 chr4 104463294 104463662 -79825000 - THE1C LTR MaLR 0 375 1 267 103 0 0 chr4 104464146 104464185 -79824477 + (CA)n Simple_repeat Simple_repeat 1 39 0 1890 128 44 3 chr4 104464226 104464522 -79824140 - AluSq SINE Alu -5 308 1 404 301 22 0 chr4 104465428 104465564 -79823098 - MER103 DNA DNA -25 141 3 966 90 15 0 chr4 104466776 104466909 -79821753 - L1PA7 LINE L1 -3 6151 6017 5078 50 3 0 chr4 104466909 104467534 -79821128 + L1PA7 LINE L1 5406 6032 -122 353 290 14 48 chr4 104467596 104467741 -79820921 + L2 LINE L2 3172 3311 -2 360 250 88 56 chr4 104670369 104670529 -79618133 + MIR SINE MIR 29 193 -69 2099 111 0 29 chr4 104670562 104670878 -79617784 + AluSq SINE Alu 1 307 -6 377 310 0 9 chr4 104671201 104671314 -79617348 + (CCA)n Simple_repeat Simple_repeat 3 114 0 489 80 0 0 chr4 104672487 104672562 -79616100 + (TC)n Simple_repeat Simple_repeat 2 76 0 27 0 0 0 chr4 104673693 104673720 -79614942 + AT_rich Low_complexity Low_complexity 1 27 0 2500 103 30 11 chr4 104674421 104674789 -79613873 - THE1C LTR MaLR 0 375 1 267 103 0 0 chr4 104675273 104675312 -79613350 + (CA)n Simple_repeat Simple_repeat 1 39 0 1890 128 44 3 chr4 104675353 104675649 -79613013 - AluSq SINE Alu -5 308 1 404 301 22 0 chr4 104676555 104676691 -79611971 - MER103 DNA DNA -25 141 3 966 90 15 0 chr4 104677903 104678036 -79610626 - L1PA7 LINE L1 -3 6151 6017 5078 50 3 0 chr4 104678036 104678661 -79610001 + L1PA7 LINE L1 5406 6032 -122 353 290 14 48 chr4 104678723 104678868 -79609794 + L2 LINE L2 3172 3311 -2 275 258 52 39 chr4 104679790 104679945 -79608717 - Charlie7 DNA MER1_type -2455 157 1 1513 159 92 32 chr4 104680193 104680507 -79608155 + MER44D DNA MER2_type 7 609 0 264 59 0 0 chr4 104681357 104681391 -79607271 + (A)n Simple_repeat Simple_repeat 1 34 0 1240 218 128 40 chr4 104682155 104682578 -79606084 + MLT1C LTR MaLR 6 465 -2 374 260 32 81 chr4 104682733 104682856 -79605806 - L2 LINE L2 -1 3312 3196 485 339 35 0 chr4 104684496 104684670 -79603992 + MER5A DNA MER1_type 8 187 -2 224 278 0 19 chr4 104684817 104684871 -79603791 + MIR SINE MIR 21 73 -135 * 308 269 96 0 chr4 104684870 104684974 -79603688 - L2 LINE L2 0 3313 3200 247 329 0 39 chr4 104685438 104685593 -79603069 + CT-rich Low_complexity Low_complexity 3 151 0 396 195 168 0 chr4 104687775 104687888 -79600774 - L1ME4a LINE L1 -27 6094 5963 180 0 0 0 chr4 104687935 104687955 -79600707 + (TC)n Simple_repeat Simple_repeat 2 21 0 1425 182 24 37 chr4 104687981 104688277 -79600385 - MLT1A2 LTR MaLR -7 367 76 225 167 0 91 chr4 104688296 104688362 -79600300 - L1ME4a LINE L1 -215 5906 5847 372 297 103 16 chr4 104688368 104688553 -79600109 - L1ME4a LINE L1 -304 5817 5617 1335 213 78 11 chr4 104689075 104689436 -79599226 + L1MD2 LINE L1 5965 6349 -10 480 272 54 22 chr4 104690817 104691001 -79597661 - MLT1I LTR MaLR -201 208 19 2392 102 14 11 chr4 104691074 104691428 -79597234 - THE1A LTR MaLR 0 355 1 10833 100 29 0 chr4 104691428 104692964 -79595698 - THE1A-int LTR MaLR 0 1580 1 2373 107 14 11 chr4 104692964 104693318 -79595344 - THE1A LTR MaLR 0 355 1 188 350 61 62 chr4 104693469 104693934 -79594728 - L2 LINE L2 -213 3059 2383 235 260 0 0 chr4 104694885 104694935 -79593727 + LTR67 LTR ERVL 501 550 -7 1914 124 41 59 chr4 104697073 104697412 -79591250 - MER7A DNA MER2_type -15 331 1 383 250 0 50 chr4 104698096 104698196 -79590466 - MIR SINE MIR 0 262 168 471 344 60 19 chr4 104698322 104698714 -79589948 + L1M4 LINE L1 4282 4701 -1445 307 152 71 4 chr4 104698724 104698815 -79589847 + MLT1H1 LTR MaLR 461 539 -10 229 216 141 60 chr4 104698817 104699002 -79589660 - MER34B LTR ERV1 0 565 366 1764 103 21 0 chr4 104699039 104699272 -79589390 - AluSx SINE Alu -74 238 1 206 140 0 60 chr4 104699288 104699338 -79589324 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2001 185 30 25 chr4 104699363 104699757 -79588905 + MSTD LTR MaLR 1 396 0 399 199 0 0 chr4 104699941 104700037 -79588625 - MER34 LTR ERV1 -446 100 10 966 229 5 24 chr4 104700342 104700552 -79588110 + MER58A DNA MER1_type 19 224 0 2236 119 0 0 chr4 104700928 104701231 -79587431 - AluSg SINE Alu -7 303 1 552 125 0 11 chr4 104703311 104703399 -79585263 + MER20 DNA MER1_type 133 219 0 286 200 114 19 chr4 104703894 104703999 -79584663 + L1ME4a LINE L1 5808 5922 -199 2522 63 0 25 chr4 104704248 104704567 -79584095 - AluY SINE Alu 0 311 1 539 331 17 65 chr4 104705823 104706179 -79582483 - L1MEd LINE L1 -5272 847 509 315 356 88 44 chr4 104706304 104706624 -79582038 - L1MEd LINE L1 -5776 343 10 518 352 75 46 chr4 104706711 104707126 -79581536 + L2 LINE L2 2827 3253 -19 23 54 0 0 chr4 104707227 104707264 -79581398 + AT_rich Low_complexity Low_complexity 1 37 0 1299 246 176 42 chr4 104707824 104708374 -79580288 + MLT1E3 LTR MaLR 1 624 0 2281 78 10 0 chr4 104708539 104708834 -79579828 + AluY SINE Alu 1 298 -13 279 270 0 40 chr4 104710165 104710239 -79578423 + MER5B DNA MER1_type 38 108 -70 8148 100 44 37 chr4 104711630 104712922 -79575740 + HSMAR2 DNA Mariner 1 1301 -1 1380 156 165 18 chr4 104712931 104713258 -79575404 + THE1C LTR MaLR 1 375 0 956 224 50 29 chr4 104713342 104713512 -79575150 + MIR SINE MIR 12 190 -72 1687 152 70 18 chr4 104713512 104713854 -79574808 + MER46B DNA MER2_type 1 235 -1 956 224 50 29 chr4 104713854 104713924 -79574738 + MIR SINE MIR 190 257 -5 280 250 23 0 chr4 104714700 104714788 -79573874 + (TA)n Simple_repeat Simple_repeat 2 91 0 742 167 116 60 chr4 104714826 104715042 -79573620 + L1ME3A LINE L1 5943 6170 0 285 261 36 63 chr4 104715269 104715380 -79573282 - MIR3 SINE MIR -6 202 95 21 0 0 0 chr4 104715445 104715466 -79573196 + AT_rich Low_complexity Low_complexity 1 21 0 335 215 221 19 chr4 104715602 104715760 -79572902 - HAL1 LINE L1 -27 2480 2291 520 267 23 0 chr4 104715883 104716014 -79572648 + MIR SINE MIR 129 262 0 233 191 59 59 chr4 104716029 104716097 -79572565 - HAL1 LINE L1 -426 2081 2014 1191 158 11 0 chr4 104716116 104716300 -79572362 - AluJo SINE Alu -126 186 1 2471 57 7 3 chr4 104716782 104717082 -79571580 - AluY SINE Alu -10 301 1 207 0 0 0 chr4 104717674 104717697 -79570965 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 23 33 0 0 chr4 104719385 104719415 -79569247 + AT_rich Low_complexity Low_complexity 1 30 0 196 304 29 14 chr4 104720270 104720339 -79568323 - MIR3 SINE MIR -11 197 128 534 326 87 21 chr4 104720743 104720985 -79567677 - MIR SINE MIR -3 259 2 501 200 179 32 chr4 104721283 104721473 -79567189 + MER46C DNA MER2_type 1 218 -120 1338 179 70 72 chr4 104722993 104723450 -79565212 + MER31B LTR ERV1 11 543 0 267 307 93 7 chr4 104723460 104723600 -79565062 + MIR SINE MIR 97 248 -14 209 270 48 0 chr4 104723876 104723939 -79564723 - MIR SINE MIR -25 237 172 30 45 0 0 chr4 104724181 104724225 -79564437 + AT_rich Low_complexity Low_complexity 1 44 0 684 216 49 31 chr4 104724235 104724397 -79564265 + MIR SINE MIR 23 187 -75 237 244 47 35 chr4 104724480 104724566 -79564096 + MIR SINE MIR 175 261 -1 1144 249 124 5 chr4 104724712 104725146 -79563516 + L1ME3A LINE L1 5458 5943 -227 1051 232 70 26 chr4 104725206 104725547 -79563115 + LTR16A LTR ERVL 95 450 0 256 286 44 44 chr4 104725561 104725743 -79562919 + L1ME3A LINE L1 5953 6134 -36 362 208 52 115 chr4 104726113 104726356 -79562306 + MER39 LTR ERV1 8 443 -264 841 190 27 88 chr4 104728227 104728244 -79560418 + L1MC4a LINE L1 6600 6616 -1192 378 61 0 0 chr4 104728244 104728293 -79560369 + (CA)n Simple_repeat Simple_repeat 2 50 0 841 190 27 88 chr4 104728293 104728538 -79560124 + L1MC4a LINE L1 6616 6846 -962 212 288 25 25 chr4 104728681 104728761 -79559901 + L2 LINE L2 2217 2296 -1018 526 274 78 12 chr4 104731242 104731487 -79557175 + LTR33 LTR ERVL 261 521 0 406 252 18 0 chr4 104732567 104732678 -79555984 - MLT1L LTR MaLR -12 603 491 252 271 114 36 chr4 104732820 104732960 -79555702 - MLT1L LTR MaLR -333 282 132 2230 116 25 8 chr4 104733375 104733728 -79554934 - THE1C LTR MaLR -16 359 1 337 326 89 11 chr4 104733733 104733923 -79554739 - MIR SINE MIR -18 244 40 233 230 222 32 chr4 104734466 104734592 -79554070 + L2 LINE L2 3163 3312 -1 361 264 0 50 chr4 104734960 104735081 -79553581 + L1MC4 LINE L1 6592 6706 -1336 306 353 60 54 chr4 104736266 104736450 -79552212 + L2 LINE L2 3084 3268 -4 183 80 0 0 chr4 104737039 104737064 -79551598 + (A)n Simple_repeat Simple_repeat 1 25 0 2166 135 0 10 chr4 104738038 104738349 -79550313 - AluSx SINE Alu -4 308 1 182 305 0 17 chr4 104739741 104739800 -79548862 + MER5A DNA MER1_type 123 180 -9 1887 190 56 62 chr4 104741296 104741848 -79546814 + MER44D DNA MER2_type 1 604 -1 2278 125 0 0 chr4 104741967 104742278 -79546384 - AluSq SINE Alu -2 311 1 243 0 0 0 chr4 104742532 104742559 -79546103 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 504 258 123 19 chr4 104742962 104743117 -79545545 - MIR SINE MIR -65 197 27 5237 46 1 5 chr4 104743234 104743881 -79544781 - L1PA6 LINE L1 -5 6149 5505 538 367 48 0 chr4 104743923 104744130 -79544532 - MIR SINE MIR 0 262 46 285 354 94 8 chr4 104744381 104744508 -79544154 + MER5A DNA MER1_type 1 138 -51 833 233 64 4 chr4 104744514 104744750 -79543912 - MLT1H LTR MaLR -280 269 20 1810 193 41 22 chr4 104744907 104745399 -79543263 + Charlie7 DNA MER1_type 1504 2004 -608 15350 113 32 55 chr4 104745401 104746032 -79542630 - Tigger4(Zombi) DNA MER2_type 0 2731 2087 2035 143 3 0 chr4 104746032 104746326 -79542336 - AluSx SINE Alu -17 295 1 15350 113 32 55 chr4 104746326 104748489 -79540173 - Tigger4(Zombi) DNA MER2_type -644 2087 2 432 260 145 27 chr4 104748497 104748873 -79539789 + Charlie7 DNA MER1_type 2012 2441 -171 1963 163 14 3 chr4 104748873 104749229 -79539433 + MER46B DNA MER2_type 2 236 0 432 260 145 27 chr4 104749229 104749260 -79539402 + Charlie7 DNA MER1_type 2441 2467 -145 1414 175 36 0 chr4 104749312 104749586 -79539076 + L1MB3 LINE L1 5450 5733 -447 669 240 128 45 chr4 104749591 104749950 -79538712 - MER57B LTR ERV1 -5 429 41 1388 207 17 0 chr4 104749973 104750272 -79538390 + L1MB3 LINE L1 5720 6023 -160 382 189 33 11 chr4 104750272 104750362 -79538300 + MER61B-int LTR ERV1 1 92 -5125 484 153 24 141 chr4 104750597 104750767 -79537895 + MER61B-int LTR ERV1 241 390 -4827 * 22616 96 18 16 chr4 104750766 104754232 -79534430 + MER61B-int LTR ERV1 1747 5217 0 1263 194 7 42 chr4 104754254 104754537 -79534125 + MER61B LTR ERV1 124 396 -29 587 117 180 0 chr4 104754553 104754681 -79533981 + L1MB4 LINE L1 6027 6177 -3 1265 129 0 0 chr4 104754683 104754853 -79533809 - AluSq SINE Alu -86 227 58 493 232 40 24 chr4 104754869 104754994 -79533668 + MIR SINE MIR 27 153 -109 22962 176 27 22 chr4 104755435 104761790 -79526872 - L1PA10 LINE L1 -10 6473 8 332 264 72 8 chr4 104762183 104762308 -79526354 - L1ME3A LINE L1 -208 5962 5830 311 109 0 0 chr4 104763267 104763313 -79525349 + MLT2C2 LTR ERVL 419 464 0 2545 245 33 13 chr4 104764583 104765256 -79523406 + Zaphod DNA AcHobo 20 705 -3326 2444 166 61 95 chr4 104765256 104766101 -79522561 - LTR1 LTR ERV1 0 785 7 352 173 69 17 chr4 104766107 104766338 -79522324 + Zaphod DNA AcHobo 701 943 -3088 1243 186 120 3 chr4 104766455 104766788 -79521874 + Zaphod DNA AcHobo 3601 3972 -59 1894 243 54 23 chr4 104766794 104767366 -79521296 + MER90 LTR ERV1 25 614 0 360 293 20 10 chr4 104767643 104767742 -79520920 - L2 LINE L2 -28 3285 3186 27 0 0 0 chr4 104768029 104768056 -79520606 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr4 104768519 104768540 -79520122 + AT_rich Low_complexity Low_complexity 1 21 0 12070 158 23 22 chr4 104769231 104772666 -79515996 - L1MA5 LINE L1 -6 7713 4286 678 203 11 44 chr4 104772676 104772858 -79515804 - L1MA5 LINE L1 -3891 3674 3499 2123 118 0 7 chr4 104773090 104773378 -79515284 - AluSp SINE Alu -26 287 2 711 297 113 41 chr4 104773386 104773918 -79514744 - MLT1G LTR MaLR -7 583 14 326 321 71 0 chr4 104775422 104775562 -79513100 + L2 LINE L2 2646 2795 -519 39 38 0 0 chr4 104777383 104777436 -79511226 + AT_rich Low_complexity Low_complexity 1 53 0 244 293 24 65 chr4 104777638 104777664 -79510998 - MIR SINE MIR 0 262 236 1945 164 43 3 chr4 104777664 104778011 -79510651 + MLT1A1 LTR MaLR 1 361 -4 244 293 24 65 chr4 104778011 104778107 -79510555 - MIR SINE MIR -26 236 145 355 296 10 112 chr4 104778159 104778365 -79510297 + L1MEd LINE L1 964 1148 -4971 2409 127 28 2 chr4 104779061 104779454 -79509208 - MER57A LTR ERV1 0 403 1 432 340 38 55 chr4 104779794 104780141 -79508521 + HAL1 LINE L1 1044 1384 -1123 432 334 39 59 chr4 104780286 104780316 -79508346 + HAL1b LINE L1 505 534 -814 1680 220 25 54 chr4 104780316 104780797 -79507865 - MLT1C LTR MaLR 0 467 1 432 334 39 59 chr4 104780797 104780810 -79507852 + HAL1b LINE L1 534 546 -802 342 0 0 0 chr4 104780810 104780848 -79507814 + (TA)n Simple_repeat Simple_repeat 2 39 0 432 334 39 59 chr4 104780848 104781210 -79507452 + HAL1b LINE L1 546 903 -445 658 328 74 18 chr4 104781436 104781894 -79506768 + L1MEd LINE L1 2127 2610 -3519 231 297 45 33 chr4 104781956 104782377 -79506285 + L1MEd LINE L1 2863 3288 -2841 433 304 135 25 chr4 104782736 104783285 -79505377 + L1MEd LINE L1 3695 4303 -1826 2389 155 31 12 chr4 104783958 104784378 -79504284 + MSTA LTR MaLR 1 428 0 9043 176 34 3 chr4 104784378 104785979 -79502683 + MSTA-int LTR MaLR 1 1651 0 2430 147 51 5 chr4 104785979 104786388 -79502274 + MSTA LTR MaLR 1 428 0 277 277 193 18 chr4 104786869 104787035 -79501627 + L2 LINE L2 2116 2310 -1004 2515 74 0 0 chr4 104787098 104787408 -79501254 - AluY SINE Alu -1 310 1 284 385 102 23 chr4 104787479 104787822 -79500840 + L2 LINE L2 2383 2752 -562 1092 188 31 8 chr4 104787970 104788231 -79500431 - L1MA8 LINE L1 -5 6286 6020 236 289 115 10 chr4 104788353 104788457 -79500205 + L2 LINE L2 3156 3270 -2 2155 95 13 30 chr4 104789499 104789803 -79498859 + AluSg SINE Alu 1 299 -11 308 285 161 8 chr4 104790801 104790931 -79497731 + MIR3 SINE MIR 20 169 -39 1043 184 159 92 chr4 104791075 104791445 -79497217 + MSTD LTR MaLR 2 396 0 545 304 82 6 chr4 104791876 104792047 -79496615 + MIR SINE MIR 33 216 -46 197 368 88 16 chr4 104792909 104793034 -79495628 - L2 LINE L2 -616 2698 2565 563 311 0 0 chr4 104793090 104793241 -79495421 + MIR SINE MIR 2 152 -110 454 229 31 0 chr4 104793266 104793362 -79495300 + MER96 DNA MER1_type? 77 175 0 241 307 0 13 chr4 104793365 104793440 -79495222 + MIR SINE MIR 151 224 -38 188 329 58 70 chr4 104793462 104793705 -79494957 - L2 LINE L2 -791 2523 2284 333 0 0 0 chr4 104794208 104794245 -79494417 + (TG)n Simple_repeat Simple_repeat 2 38 0 1850 150 7 3 chr4 104794664 104794951 -79493711 - AluSx SINE Alu -24 288 1 2443 124 20 0 chr4 104795072 104795428 -79493234 - THE1B LTR MaLR 0 364 2 213 260 13 13 chr4 104795450 104795527 -79493135 + A-rich Low_complexity Low_complexity 2 78 0 10645 30 1 0 chr4 104795636 104797671 -79490991 + L1PA3 LINE L1 4115 6152 -3 214 182 0 23 chr4 104797679 104797723 -79490939 + GA-rich Low_complexity Low_complexity 3 45 0 333 296 204 37 chr4 104797932 104798226 -79490436 + HAL1b LINE L1 324 666 -682 4768 171 30 10 chr4 104798908 104799995 -79488667 + L1PB4 LINE L1 4678 5808 -348 249 33 0 0 chr4 104799995 104800025 -79488637 + (CA)n Simple_repeat Simple_repeat 2 31 0 4768 171 30 10 chr4 104800025 104800374 -79488288 + L1PB4 LINE L1 5808 6149 -7 22 0 0 0 chr4 104800577 104800599 -79488063 + AT_rich Low_complexity Low_complexity 1 22 0 223 279 173 46 chr4 104800661 104800858 -79487804 - L2 LINE L2 -1279 2035 1814 374 318 30 66 chr4 104801008 104801206 -79487456 + MLT1K LTR MaLR 90 280 -308 234 258 65 0 chr4 104801231 104801293 -79487369 + MER91C DNA MER1_type 38 103 -37 405 266 79 56 chr4 104801311 104801563 -79487099 + MLT1K LTR MaLR 284 541 -47 445 256 113 6 chr4 104804293 104804453 -79484209 + L1MC4a LINE L1 5673 5849 -1959 410 368 77 16 chr4 104805443 104805872 -79482790 - L1 LINE L1 -2415 3731 3277 186 133 0 0 chr4 104806171 104806201 -79482461 + (TCTCCC)n Simple_repeat Simple_repeat 1 30 0 673 189 74 57 chr4 104806528 104806703 -79481959 + MER5B DNA MER1_type 1 178 0 1126 174 76 133 chr4 104807775 104808172 -79480490 - MLT1A2 LTR MaLR 0 374 1 234 162 0 0 chr4 104808176 104808213 -79480449 - MIR SINE MIR -90 118 82 977 286 126 27 chr4 104810745 104811158 -79477504 - L2 LINE L2 -9 3304 2851 387 244 189 8 chr4 104811148 104811386 -79477276 - L2 LINE L2 -1135 2179 1899 * 306 292 62 10 chr4 104811404 104811500 -79477162 - L2 LINE L2 -1528 1786 1686 303 104 0 0 chr4 104811585 104811633 -79477029 + (CA)n Simple_repeat Simple_repeat 1 48 0 454 213 107 122 chr4 104812026 104812274 -79476388 + MIR SINE MIR 8 248 -14 180 200 0 0 chr4 104812598 104812628 -79476034 + MER5A DNA MER1_type 1 30 -159 247 323 125 11 chr4 104813934 104814049 -79474613 + MIR SINE MIR 10 135 -73 517 297 126 42 chr4 104814234 104814473 -79474189 + MIR SINE MIR 4 262 0 320 279 115 0 chr4 104814462 104814566 -79474096 - MIR SINE MIR -101 161 46 * 6857 55 8 0 chr4 104816497 104817479 -79471183 - L1PA5 LINE L1 -37 6117 5129 543 274 150 35 chr4 104817892 104818118 -79470544 - MIR SINE MIR 0 262 11 251 266 13 13 chr4 104818534 104818613 -79470049 + (TA)n Simple_repeat Simple_repeat 2 80 0 766 261 22 11 chr4 104818710 104818890 -79469772 - MER5A DNA MER1_type 0 189 8 505 338 107 32 chr4 104819940 104820608 -79468054 - L2 LINE L2 0 3313 2561 1661 193 112 33 chr4 104820608 104821090 -79467572 + MLT2B1 LTR ERVL 1 520 0 505 338 107 32 chr4 104821090 104821185 -79467477 - L2 LINE L2 -752 2561 2475 623 289 71 24 chr4 104823144 104823607 -79465055 - L1M4 LINE L1 -2878 3268 2784 2722 251 56 23 chr4 104823803 104824792 -79463870 - L1MC4a LINE L1 -747 5399 5006 233 282 0 51 chr4 104875188 104875266 -79413396 - MIR SINE MIR -59 149 79 1269 252 72 6 chr4 104875382 104875703 -79412959 + MER2 DNA MER2_type 1 342 -2 3081 208 66 62 chr4 104875898 104876859 -79411803 - L1MC4 LINE L1 0 8042 7079 702 241 125 64 chr4 104876895 104877600 -79411062 - L1MC4a LINE L1 -1253 4893 4146 364 247 127 20 chr4 104878081 104878231 -79410431 + L2 LINE L2 3148 3313 0 497 278 89 34 chr4 104878235 104878562 -79410100 - L1MC4a LINE L1 -3592 2554 2210 23 54 0 0 chr4 104878822 104878859 -79409803 + AT_rich Low_complexity Low_complexity 1 37 0 275 173 0 0 chr4 104878922 104878974 -79409688 - Charlie5 DNA MER1_type -88 2524 2473 2208 94 17 3 chr4 104878981 104879269 -79409393 - AluSc SINE Alu -17 292 1 448 230 146 36 chr4 104879269 104879434 -79409228 - MIR SINE MIR -37 225 43 27 73 0 0 chr4 104879675 104879730 -79408932 + AT_rich Low_complexity Low_complexity 1 55 0 22 0 0 0 chr4 104879930 104879952 -79408710 + AT_rich Low_complexity Low_complexity 1 22 0 545 228 178 50 chr4 104880762 104880802 -79407860 - MIR SINE MIR 0 262 228 2183 146 128 13 chr4 104880802 104881186 -79407476 - MSTA LTR MaLR 0 428 1 9597 178 30 4 chr4 104881186 104882795 -79405867 - MSTA-int LTR MaLR 0 1651 1 2476 109 117 33 chr4 104882795 104883190 -79405472 - MSTA LTR MaLR 0 428 1 545 228 178 50 chr4 104883190 104883366 -79405296 - MIR SINE MIR -33 229 16 2288 157 60 3 chr4 104883714 104884083 -79404579 + MLT1B LTR MaLR 1 390 0 1338 296 68 18 chr4 104884088 104884591 -79404071 - LTR67 LTR ERVL 0 557 30 718 310 49 88 chr4 104884857 104885447 -79403215 + MLT1K LTR MaLR 19 585 -3 1355 166 9 9 chr4 104885777 104886006 -79402656 + MLT2B1 LTR ERVL 1 229 -291 1406 172 78 4 chr4 104886041 104886297 -79402365 - AluJo SINE Alu -37 275 1 761 301 6 25 chr4 104886300 104886533 -79402129 + MLT2B3 LTR ERVL 223 446 -108 373 130 0 26 chr4 104887708 104887785 -79400877 + (GGA)n Simple_repeat Simple_repeat 2 76 0 26 50 0 0 chr4 104888095 104888135 -79400527 + AT_rich Low_complexity Low_complexity 1 40 0 653 227 109 107 chr4 104888335 104888879 -79399783 - MLT1H1 LTR MaLR -8 547 5 389 259 108 14 chr4 104889006 104889145 -79399517 - MER103 DNA DNA -14 152 1 224 159 23 0 chr4 104889145 104889189 -79399473 + L2 LINE L2 3264 3308 -5 207 167 48 0 chr4 104889672 104889714 -79398948 + GA-rich Low_complexity Low_complexity 5 48 0 7394 178 45 35 chr4 104890815 104892348 -79396314 - L1MC3 LINE L1 0 7785 6238 233 156 22 0 chr4 104892357 104892402 -79396260 + L1MC5 LINE L1 7485 7530 -431 2510 243 126 24 chr4 104892555 104893493 -79395169 + L1ME1 LINE L1 37 1070 -5326 2877 197 42 8 chr4 104893504 104894103 -79394559 + L1ME1 LINE L1 5360 5978 -257 349 305 17 42 chr4 104894255 104894373 -79394289 - MIR3 SINE MIR -17 191 77 27 0 0 0 chr4 104894441 104894468 -79394194 + AT_rich Low_complexity Low_complexity 1 27 0 439 126 11 58 chr4 104894754 104894841 -79393821 - MLT1A1 LTR MaLR -280 85 3 621 276 28 28 chr4 104894841 104895055 -79393607 - HAL1 LINE L1 -216 2291 2078 1452 281 54 31 chr4 104895251 104895575 -79393087 + LTR16C LTR ERVL 1 341 -150 1756 150 14 27 chr4 104895575 104895869 -79392793 - AluJb SINE Alu -22 290 1 1452 281 54 31 chr4 104895869 104896024 -79392638 + LTR16C LTR ERVL 341 491 0 286 316 17 8 chr4 104896050 104896167 -79392495 - L1MC4a LINE L1 -462 7346 7229 240 211 29 67 chr4 104896163 104896267 -79392395 - L1MC4 LINE L1 -799 7243 7144 * 1286 89 0 0 chr4 104896267 104896475 -79392187 + AluY SINE Alu 126 333 0 390 257 38 19 chr4 104896480 104896585 -79392077 - L1MC5 LINE L1 -808 7153 7047 731 282 33 11 chr4 104896601 104896874 -79391788 - HAL1 LINE L1 -493 2014 1736 881 255 48 51 chr4 104896889 104897481 -79391181 - PABL_B LTR ERV1 0 667 72 15359 189 12 13 chr4 104897603 104900241 -79388421 - PABL_B-int LTR ERV1 0 7122 4487 1961 140 68 0 chr4 104900245 104900553 -79388109 - PABL_B-int LTR ERV1 -1234 5888 5560 * 25480 183 29 8 chr4 104900549 104904935 -79383727 - PABL_B-int LTR ERV1 -2640 4482 1 922 266 81 78 chr4 104904937 104905602 -79383060 - PABL_B LTR ERV1 0 667 1 704 234 122 93 chr4 104905667 104906142 -79382520 - HAL1 LINE L1 -942 1565 1077 725 237 111 51 chr4 104906183 104906217 -79382445 - L1MC5 LINE L1 -214 7747 7716 2019 140 102 9 chr4 104906217 104906560 -79382102 + THE1C LTR MaLR 1 375 0 725 237 111 51 chr4 104906560 104907031 -79381631 - L1MC5 LINE L1 -245 7716 7212 2797 84 27 119 chr4 104907031 104907520 -79381142 + MLT2A1 LTR ERVL 1 444 0 7530 77 3 15 chr4 104907520 104908495 -79380167 + HERVL-A1 LTR ERVL 1 963 -4691 1520 80 25 10 chr4 104908495 104908725 -79379937 - AluY SINE Alu 0 314 82 3925 184 25 61 chr4 104908725 104909729 -79378933 + LTR5 LTR ERVK 1 969 0 690 70 0 0 chr4 104909729 104909815 -79378847 - AluY SINE Alu -223 87 2 8751 67 3 2 chr4 104909816 104910895 -79377767 + HERVL LTR ERVL 953 2032 -3622 2867 136 30 0 chr4 104910895 104911321 -79377341 + LTR66 LTR ERVL 1 439 -171 229 185 0 31 chr4 104911332 104911397 -79377265 + L1MC4 LINE L1 6641 6703 -1339 750 163 233 0 chr4 104911401 104911573 -79377089 + LTR66 LTR ERVL 399 610 0 29002 66 7 10 chr4 104911573 104915213 -79373449 + HERVL-A1 LTR ERVL 2028 5654 0 3033 99 49 7 chr4 104915213 104915639 -79373023 + MLT2A1 LTR ERVL 1 444 0 1439 167 63 93 chr4 104915639 104916112 -79372550 - L1MC5 LINE L1 -745 7216 6758 353 202 20 50 chr4 104916164 104916263 -79372399 + L1MC5 LINE L1 6643 6738 -1223 368 196 109 11 chr4 104916265 104916357 -79372305 - MLT1E3 LTR MaLR -124 500 400 224 326 11 84 chr4 104916440 104916630 -79372032 - L2 LINE L2 -575 2739 2564 2459 68 0 0 chr4 104917278 104917574 -79371088 + AluSg SINE Alu 1 296 -14 531 247 133 12 chr4 104919385 104919551 -79369111 + MIR SINE MIR 7 192 -70 223 191 206 0 chr4 104920400 104920463 -79368199 + MIR SINE MIR 166 241 -21 233 356 11 0 chr4 104920726 104920816 -79367846 - MIR SINE MIR -20 242 152 755 234 82 0 chr4 104920821 104920992 -79367670 + MIR SINE MIR 11 195 -67 289 226 0 0 chr4 104921016 104921078 -79367584 - MIR SINE MIR -105 157 96 548 246 85 19 chr4 104921147 104921407 -79367255 - MER33 DNA MER1_type -22 302 26 570 241 20 103 chr4 104922428 104922631 -79366031 + MIR SINE MIR 50 235 -27 399 242 62 43 chr4 104922648 104922809 -79365853 - L2 LINE L2 0 3313 3150 752 202 106 5 chr4 104923170 104923358 -79365304 - MER3 DNA MER1_type 0 209 3 408 181 26 69 chr4 104923639 104923755 -79364907 + MER20 DNA MER1_type 1 111 -108 1487 151 95 51 chr4 104924044 104924435 -79364227 - MER31B LTR ERV1 -57 409 2 2323 118 0 0 chr4 104924645 104924950 -79363712 - AluSc SINE Alu -4 305 1 2031 147 21 63 chr4 104924961 104925261 -79363401 - L1MB7 LINE L1 -54 6130 5819 1518 100 5 15 chr4 104925261 104925461 -79363201 + AluSg/x SINE Alu 84 281 -31 2031 147 21 63 chr4 104925461 104925536 -79363126 - L1MB7 LINE L1 -365 5819 5777 2177 114 0 0 chr4 104925536 104925835 -79362827 - AluSc SINE Alu -10 299 1 2031 147 21 63 chr4 104925835 104925933 -79362729 - L1MB7 LINE L1 -407 5777 5676 298 233 27 0 chr4 104926412 104926485 -79362177 - MER5A DNA MER1_type -83 106 32 25 0 0 0 chr4 104926591 104926616 -79362046 + AT_rich Low_complexity Low_complexity 1 25 0 2799 139 141 32 chr4 104927392 104927946 -79360716 + LTR18B LTR ERVL 1 614 0 4031 126 49 23 chr4 104928448 104929156 -79359506 - LTR8A LTR ERV1 0 727 1 24 53 0 0 chr4 104929223 104929261 -79359401 + AT_rich Low_complexity Low_complexity 1 38 0 2229 134 37 3 chr4 104929264 104929645 -79359017 - MER57A LTR ERV1 -9 394 1 262 248 174 0 chr4 104930387 104930508 -79358154 - Charlie2 DNA MER1_type -2471 311 170 2810 219 226 19 chr4 104930587 104931605 -79357057 + L1MA8 LINE L1 464 1692 -5797 2403 238 67 23 chr4 104931603 104932782 -79355880 + L1MA8 LINE L1 2008 3193 -4372 * 9155 154 32 34 chr4 104932783 104932837 -79355825 + L1MA8 LINE L1 4948 5001 -2709 1671 161 72 31 chr4 104932837 104933197 -79355465 - THE1C LTR MaLR 0 375 1 9155 154 32 34 chr4 104933197 104933458 -79355204 + L1MA8 LINE L1 5001 5261 -2449 2149 123 3 0 chr4 104933458 104933758 -79354904 - AluSp SINE Alu -12 301 1 9155 154 32 34 chr4 104933758 104936033 -79352629 + L1MA8 LINE L1 5261 7525 -185 1669 167 47 21 chr4 104936032 104936415 -79352247 - L1M4 LINE L1 -465 5719 5327 * 578 264 224 14 chr4 104936525 104936802 -79351860 + L2 LINE L2 2978 3312 -1 * 579 292 68 10 chr4 104936791 104936997 -79351665 + MIR SINE MIR 7 223 -39 968 235 106 35 chr4 104937573 104937913 -79350749 - MLT1A1 LTR MaLR -1 364 1 337 308 17 0 chr4 104938110 104938230 -79350432 - L1ME LINE L1 -518 5603 5482 341 238 143 20 chr4 104938272 104938419 -79350243 - HAL1b LINE L1 -415 933 769 875 242 71 18 chr4 104938437 104938776 -79349886 - HAL1b LINE L1 -647 701 345 494 292 53 45 chr4 104938835 104939325 -79349337 - L1ME LINE L1 -1156 4990 4497 2494 185 88 9 chr4 104939434 104939991 -79348671 - L1MCa LINE L1 -5797 629 29 1232 184 239 11 chr4 104940300 104940676 -79347986 - MLT1C LTR MaLR 0 467 6 634 245 129 52 chr4 104941052 104941601 -79347061 - MLT1F1 LTR MaLR -12 555 1 6050 80 62 0 chr4 104941675 104942621 -79346041 - L1PA10 LINE L1 0 6168 5217 5459 103 8 2 chr4 104942621 104943456 -79345206 + L1P LINE L1 3833 4672 -1474 26 0 0 0 chr4 104943683 104943709 -79344953 + AT_rich Low_complexity Low_complexity 1 26 0 1183 171 44 9 chr4 104944129 104944357 -79344305 + AluJo SINE Alu 60 295 -17 5635 113 28 11 chr4 104945268 104946563 -79342099 - L1PA11 LINE L1 0 6174 4811 352 230 274 25 chr4 104946597 104946801 -79341861 - MIR SINE MIR 0 262 8 225 298 140 35 chr4 104946799 104946913 -79341749 + L2 LINE L2 3138 3263 -9 * 581 266 149 9 chr4 104946961 104947175 -79341487 + MIR SINE MIR 7 250 -12 281 336 141 46 chr4 104947774 104948799 -79339863 - L2 LINE L2 0 3272 2139 227 312 53 24 chr4 104948945 104949115 -79339547 - L2 LINE L2 -189 3083 2909 346 337 153 18 chr4 104949156 104949835 -79338827 - L2 LINE L2 -488 2826 2056 897 201 0 12 chr4 104949964 104950128 -79338534 - FAM SINE Alu -10 165 4 22 0 0 0 chr4 104951227 104951249 -79337413 + AT_rich Low_complexity Low_complexity 1 22 0 242 205 77 39 chr4 104951485 104951563 -79337099 + L2 LINE L2 3153 3233 -39 1210 217 71 9 chr4 104951896 104952219 -79336443 - MER2 DNA MER2_type 0 344 2 241 26 26 26 chr4 104952412 104952451 -79336211 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 219 324 42 78 chr4 104953067 104953209 -79335453 + L2 LINE L2 3134 3270 -2 4320 123 71 28 chr4 104953260 104953293 -79335369 - MER4E LTR ERV1 -4 775 745 1789 67 5 5 chr4 104953293 104953516 -79335146 + AluY SINE Alu 71 293 -18 4320 123 71 28 chr4 104953516 104954225 -79334437 - MER4E LTR ERV1 -34 745 1 510 218 24 16 chr4 104954875 104954999 -79333663 + MER5B DNA MER1_type 1 125 -53 938 257 87 0 chr4 104955840 104956116 -79332546 - MER82 DNA MER2_type -6 647 348 21 36 0 0 chr4 104956233 104956261 -79332401 + AT_rich Low_complexity Low_complexity 1 28 0 840 275 102 31 chr4 104957943 104958623 -79330039 - L1MCa LINE L1 -4767 2174 1447 733 120 0 9 chr4 104958638 104958746 -79329916 + AluSg/x SINE Alu 191 297 -15 2023 220 56 60 chr4 104958750 104959537 -79329125 - L1MCa LINE L1 -4992 1431 648 1323 193 53 48 chr4 104959634 104960033 -79328629 - L1MCa LINE L1 -5954 469 69 40853 47 6 1 chr4 104960228 104966345 -79322317 - L1PA4 LINE L1 0 6155 3 370 203 0 0 chr4 104966502 104966566 -79322096 - MER2 DNA MER2_type -10 335 272 1124 153 45 5 chr4 104966599 104966801 -79321861 - MER2 DNA MER2_type -135 210 1 321 191 29 0 chr4 104967194 104967262 -79321400 - L1MD3 LINE L1 -196 7799 7730 194 338 36 36 chr4 104967416 104967555 -79321107 + L2 LINE L2 2620 2758 -556 1761 155 30 26 chr4 104967591 104967895 -79320767 + AluJo SINE Alu 2 306 -6 207 328 15 15 chr4 104968324 104968391 -79320271 + L2 LINE L2 2579 2645 -669 336 259 71 9 chr4 104968823 104968935 -79319727 - L2 LINE L2 -5 3308 3190 2971 77 0 64 chr4 104969571 104970037 -79318625 - MLT2A1 LTR ERVL -8 436 1 389 293 88 20 chr4 104970072 104970299 -79318363 - MIR SINE MIR -18 244 3 2003 229 66 62 chr4 104970834 104971564 -79317098 - MER21B LTR ERV1 -124 739 7 31 26 0 0 chr4 104972689 104972727 -79315935 + AT_rich Low_complexity Low_complexity 1 38 0 643 259 32 21 chr4 104974570 104974759 -79313903 + MIR SINE MIR 72 262 0 420 226 37 79 chr4 104974797 104974961 -79313701 + MIR SINE MIR 91 247 -15 29 28 0 0 chr4 104975729 104975765 -79312897 + AT_rich Low_complexity Low_complexity 1 36 0 214 215 11 43 chr4 104976285 104976378 -79312284 + T-rich Low_complexity Low_complexity 5 94 0 286 93 52 0 chr4 104976758 104976811 -79311851 - L1MC1 LINE L1 -1 6343 6282 3425 154 52 14 chr4 104976814 104977553 -79311109 - L1MC1 LINE L1 -405 5928 5162 371 242 21 11 chr4 104979548 104979643 -79309019 - MLT1A2 LTR MaLR -278 96 1 401 130 0 0 chr4 104980042 104980111 -79308551 - Alu SINE Alu -4 307 239 650 259 90 2 chr4 104980283 104980497 -79308165 - L1MC4 LINE L1 -1040 7002 6680 285 177 0 16 chr4 104980578 104980640 -79308022 - L1M LINE L1 -872 5425 5365 1723 117 9 92 chr4 104980662 104980987 -79307675 - AluSx SINE Alu -14 298 1 486 270 52 0 chr4 104981011 104981126 -79307536 + MER5A DNA MER1_type 2 122 -67 232 341 138 0 chr4 105081191 105081329 -79207333 - MIR SINE MIR -15 247 91 255 209 297 0 chr4 105081476 105081567 -79207095 - MIR SINE MIR -128 134 17 2200 121 0 3 chr4 105081866 105082163 -79206499 + AluSq SINE Alu 3 298 -15 2251 89 3 7 chr4 105082552 105082843 -79205819 + AluSc SINE Alu 1 290 -19 1022 228 17 22 chr4 105083084 105083316 -79205346 - MER115 DNA AcHobo -19 674 444 513 331 76 0 chr4 105083385 105083557 -79205105 - MER115 DNA AcHobo -381 312 128 478 305 139 4 chr4 105085581 105085884 -79202778 - MLT1I LTR MaLR 0 409 35 350 115 0 0 chr4 105086006 105086058 -79202604 - L1MB7 LINE L1 -18 6166 6115 1885 144 27 0 chr4 105086063 105086355 -79202307 + AluSx SINE Alu 3 302 -10 254 148 74 37 chr4 105086494 105086548 -79202114 + MLT1B LTR MaLR 331 386 -4 672 301 94 53 chr4 105086584 105087168 -79201494 - HAL1 LINE L1 -1798 709 102 1033 308 109 0 chr4 105087260 105087682 -79200980 + L2 LINE L2 1865 2332 -982 1008 295 92 37 chr4 105087681 105088344 -79200318 - L2 LINE L2 -1 3312 2611 * 836 264 186 14 chr4 105088328 105088688 -79199974 + L2 LINE L2 2317 2738 -576 * 770 208 22 28 chr4 105088699 105088877 -79199785 + L1MB5 LINE L1 5998 6174 0 487 193 11 12 chr4 105088908 105089019 -79199643 - MLT1J LTR MaLR 0 597 416 243 0 0 0 chr4 105089159 105089186 -79199476 + (A)n Simple_repeat Simple_repeat 1 27 0 474 313 176 3 chr4 105089710 105090033 -79198629 + HAL1 LINE L1 1185 1563 -944 784 242 63 50 chr4 105090216 105090518 -79198144 + MLT1J1 LTR MaLR 42 347 -99 541 198 93 25 chr4 105090525 105090800 -79197862 - MLT1A2 LTR MaLR 0 374 1 304 253 48 0 chr4 105090801 105090884 -79197778 + MLT1J1 LTR MaLR 358 444 -2 505 255 181 67 chr4 105090919 105091278 -79197384 + HAL1 LINE L1 1840 2157 -350 315 0 0 0 chr4 105091278 105091313 -79197349 + (TG)n Simple_repeat Simple_repeat 2 36 0 505 255 181 67 chr4 105091313 105091534 -79197128 + HAL1 LINE L1 2157 2486 -21 21 0 0 0 chr4 105092031 105092052 -79196610 + AT_rich Low_complexity Low_complexity 1 21 0 225 189 98 115 chr4 105092068 105092190 -79196472 + L1MC/D LINE L1 5346 5465 -2343 1914 86 0 34 chr4 105092750 105093017 -79195645 + AluY SINE Alu 39 296 -15 205 284 0 14 chr4 105093309 105093383 -79195279 + A-rich Low_complexity Low_complexity 4 76 0 1521 123 27 0 chr4 105094748 105094967 -79193695 - MSTA LTR MaLR 0 428 204 1573 176 14 28 chr4 105095801 105096091 -79192571 - AluJb SINE Alu -22 290 5 2264 96 0 10 chr4 105096180 105096473 -79192189 - AluSg SINE Alu -19 291 2 2307 87 3 7 chr4 105096693 105096991 -79191671 - AluSc SINE Alu -12 297 1 360 64 0 0 chr4 105098010 105098057 -79190605 + (TC)n Simple_repeat Simple_repeat 2 48 0 661 259 29 18 chr4 105098231 105098401 -79190261 - MER5B DNA MER1_type 0 178 7 2240 113 3 6 chr4 105098514 105098825 -79189837 - AluSx SINE Alu -2 310 1 329 352 75 14 chr4 105098951 105099164 -79189498 + L2 LINE L2 1186 1411 -1903 191 309 93 0 chr4 105099632 105099729 -79188933 + L2 LINE L2 1865 1970 -1344 516 212 0 0 chr4 105100006 105100091 -79188571 + AluS SINE Alu 2 86 -227 672 99 0 0 chr4 105100191 105100282 -79188380 - MSTA LTR MaLR -337 91 1 198 276 20 122 chr4 105100493 105100591 -79188071 + MIR SINE MIR 38 125 -83 257 268 56 0 chr4 105100611 105100682 -79187980 + L2 LINE L2 3233 3307 -6 1061 166 25 25 chr4 105100742 105100941 -79187721 - MER3 DNA MER1_type -5 204 6 5437 168 60 10 chr4 105101122 105102435 -79186227 + L1MC2 LINE L1 4892 6344 0 8186 25 0 3 chr4 105102577 105104096 -79184566 + L1PA3 LINE L1 4640 6155 0 270 278 99 24 chr4 105104974 105105109 -79183553 - MLT1J1 LTR MaLR -27 419 280 1567 299 78 4 chr4 105105240 105105792 -79182870 + L2 LINE L2 2082 2674 -640 331 284 136 13 chr4 105105769 105105924 -79182738 + L2 LINE L2 3097 3270 -43 * 6815 169 183 31 chr4 105105924 105107448 -79181214 - MER52A LTR ERV1 0 1755 1 188 159 68 0 chr4 105107448 105107492 -79181170 + L2 LINE L2 3267 3313 0 313 317 28 13 chr4 105107573 105107738 -79180924 - MLT1J LTR MaLR -204 205 56 246 32 0 0 chr4 105111265 105111296 -79177366 + (CA)n Simple_repeat Simple_repeat 2 32 0 396 263 116 68 chr4 105111317 105111610 -79177052 + L2 LINE L2 3006 3312 -1 307 236 32 114 chr4 105113173 105113296 -79175366 - L2 LINE L2 0 3313 3201 335 345 45 0 chr4 105113335 105113445 -79175217 + L2 LINE L2 3158 3272 0 202 307 175 18 chr4 105114428 105114542 -79174120 - L2 LINE L2 0 3272 3141 210 227 23 0 chr4 105114660 105114704 -79173958 + MIR SINE MIR 4 48 -214 195 73 132 176 chr4 105114719 105114787 -79173875 + MIR SINE MIR 154 218 -44 1600 176 57 81 chr4 105115492 105115913 -79172749 + MLT1C LTR MaLR 1 411 -56 654 261 76 11 chr4 105116205 105116389 -79172273 - MIR SINE MIR -55 207 12 413 135 14 14 chr4 105116452 105116526 -79172136 + LTR49 LTR ERV1 450 523 -72 231 291 58 39 chr4 105116550 105116653 -79172009 + MER103 DNA DNA 3 107 -59 222 194 0 0 chr4 105117285 105117321 -79171341 + (TG)n Simple_repeat Simple_repeat 2 37 0 259 316 0 10 chr4 105118632 105118730 -79169932 + L2 LINE L2 1739 1835 -1479 326 260 0 0 chr4 105118914 105118991 -79169671 - MER33 DNA MER1_type -247 77 1 207 341 37 0 chr4 105119850 105119932 -79168730 - L2 LINE L2 0 3272 3188 1075 279 211 24 chr4 105120092 105121090 -79167572 - L2 LINE L2 -210 3062 1864 222 37 0 0 chr4 105121178 105121205 -79167457 + (TTC)n Simple_repeat Simple_repeat 2 28 0 463 246 33 0 chr4 105121224 105121346 -79167316 - L1MD2 LINE L1 -20 6339 6214 21 0 0 0 chr4 105122539 105122560 -79166102 + AT_rich Low_complexity Low_complexity 1 21 0 551 224 30 30 chr4 105122666 105122800 -79165862 - MER94 DNA DNA 0 134 1 226 333 0 26 chr4 105123710 105123788 -79164874 - L2 LINE L2 -58 3214 3139 213 254 30 15 chr4 105125127 105125194 -79163468 - MIR SINE MIR -5 257 190 3150 184 50 7 chr4 105125195 105125869 -79162793 - L1 LINE L1 -2965 3181 2479 367 333 119 0 chr4 105125872 105126040 -79162622 - MIR SINE MIR -74 188 1 2906 162 23 4 chr4 105126869 105127401 -79161261 - L1MB7 LINE L1 -10 6174 5633 198 0 0 0 chr4 105127547 105127569 -79161093 + (TA)n Simple_repeat Simple_repeat 2 23 0 291 321 180 22 chr4 105127867 105128284 -79160378 + L2 LINE L2 2828 3310 -3 501 200 86 0 chr4 105129601 105129706 -79158956 - L2 LINE L2 0 3313 3200 947 238 72 57 chr4 105130116 105130541 -79158121 - L1MC4a LINE L1 -1814 5994 5560 2292 100 0 10 chr4 105130541 105130840 -79157822 - AluSx SINE Alu -16 296 1 947 238 72 57 chr4 105130840 105130885 -79157777 - L1MC4a LINE L1 -2248 5560 5517 275 286 0 0 chr4 105131024 105131087 -79157575 + L2 LINE L2 3136 3198 -74 234 290 318 11 chr4 105133215 105133391 -79155271 + MIR SINE MIR 1 230 -32 231 309 130 16 chr4 105133954 105134077 -79154585 - L2 LINE L2 -3 3269 3133 1439 108 0 0 chr4 105134544 105134729 -79153933 - AluSg SINE Alu -125 185 1 1061 270 68 44 chr4 105135061 105135564 -79153098 + LTR33 LTR ERVL 1 515 -6 1554 142 54 0 chr4 105135913 105136173 -79152489 - AluJo SINE Alu -11 301 28 1814 174 0 31 chr4 105136242 105136564 -79152098 + AluJb SINE Alu 1 312 0 2224 106 3 3 chr4 105138043 105138344 -79150318 - AluSx SINE Alu -11 301 1 2637 95 45 15 chr4 105139360 105139805 -79148857 - LTR56 LTR ERV1 0 445 10 2050 133 13 0 chr4 105139834 105140136 -79148526 + AluSx SINE Alu 1 306 -6 686 139 36 7 chr4 105140137 105140274 -79148388 + L1MA9 LINE L1 5940 6080 -232 322 147 133 0 chr4 105140290 105140365 -79148297 + L1MA9 LINE L1 6206 6290 -22 284 363 138 38 chr4 105140387 105140858 -79147804 + L2 LINE L2 867 1384 -1930 2129 241 72 12 chr4 105140866 105141451 -79147211 + MLT1E2 LTR MaLR 1 620 -6 252 309 82 78 chr4 105141451 105141494 -79147168 + L2 LINE L2 1383 1424 -1890 1603 167 29 0 chr4 105141494 105141770 -79146892 - AluJb SINE Alu -12 300 17 252 309 82 78 chr4 105141770 105142008 -79146654 + L2 LINE L2 1424 1665 -1649 367 179 15 0 chr4 105142017 105142084 -79146578 - L1MB7 LINE L1 -120 6064 5997 1397 191 73 11 chr4 105142142 105142414 -79146248 - AluJb SINE Alu -21 291 3 1232 299 94 26 chr4 105142459 105143117 -79145545 + L2 LINE L2 1813 2515 -799 2088 142 0 3 chr4 105143204 105143513 -79145149 - AluSx SINE Alu -2 310 3 2087 125 0 3 chr4 105144748 105145036 -79143626 + AluSg SINE Alu 1 287 -23 4912 103 72 11 chr4 105145046 105146091 -79142571 - L1MA3 LINE L1 -2 6303 5109 348 300 113 101 chr4 105147199 105147676 -79140986 - L1M2 LINE L1 -5654 1195 713 183 42 0 0 chr4 105147955 105147979 -79140683 + (TG)n Simple_repeat Simple_repeat 1 24 0 258 105 0 0 chr4 105147980 105148018 -79140644 + (T)n Simple_repeat Simple_repeat 1 38 0 269 177 211 34 chr4 105149296 105149393 -79139269 + MIR SINE MIR 1 118 -90 302 336 97 0 chr4 105149641 105149754 -79138908 - L2 LINE L2 -4 3268 3145 2138 114 0 0 chr4 105150080 105150386 -79138276 + AluSx SINE Alu 1 306 0 532 271 40 17 chr4 105150613 105150790 -79137872 - MIR SINE MIR -3 259 79 310 273 27 0 chr4 105150932 105151042 -79137620 - L1ME LINE L1 -353 5768 5656 23 0 0 0 chr4 105151615 105151638 -79137024 + AT_rich Low_complexity Low_complexity 1 23 0 745 136 8 32 chr4 105152115 105152240 -79136422 - FLAM_C SINE Alu -11 132 11 5577 106 30 7 chr4 105152264 105153153 -79135509 - L1PA15 LINE L1 -2 6163 5254 440 382 42 0 chr4 105153734 105153925 -79134737 + MIR SINE MIR 46 244 -18 490 289 235 0 chr4 105154740 105154944 -79133718 - MIR SINE MIR -5 257 6 1894 166 0 0 chr4 105155122 105155417 -79133245 + AluJb SINE Alu 1 295 -17 476 190 0 0 chr4 105155718 105155793 -79132869 + MLT1D LTR MaLR 2 76 -429 1114 136 257 0 chr4 105155793 105156076 -79132586 + MER46B DNA MER2_type 1 231 -5 1453 176 82 45 chr4 105156105 105156515 -79132147 + MLT1D LTR MaLR 88 505 0 1677 151 42 14 chr4 105157131 105157416 -79131246 + AluJo SINE Alu 1 293 -19 884 156 69 69 chr4 105158288 105158564 -79130098 - MER33 DNA MER1_type 0 324 49 399 326 136 5 chr4 105158832 105159053 -79129609 - L2 LINE L2 -50 3263 3014 300 253 10 30 chr4 105159195 105159294 -79129368 - MER106A DNA MER1_type 0 236 140 231 93 0 0 chr4 105159513 105159556 -79129106 - L1MA3 LINE L1 0 6305 6263 1552 174 57 21 chr4 105159558 105159839 -79128823 - AluJo SINE Alu -21 291 1 25 0 0 0 chr4 105159839 105159864 -79128798 + AT_rich Low_complexity Low_complexity 1 25 0 2336 127 91 13 chr4 105160048 105160443 -79128219 - MSTB LTR MaLR 0 426 1 2035 128 45 21 chr4 105162115 105162491 -79126171 + MLT1B LTR MaLR 6 390 0 2115 118 7 0 chr4 105162525 105162830 -79125832 - AluSx SINE Alu -5 307 1 239 213 88 52 chr4 105163499 105163635 -79125027 + MIR SINE MIR 109 249 -13 1218 217 120 25 chr4 105164020 105164449 -79124213 + L1ME2 LINE L1 5709 6333 -1 208 318 63 48 chr4 105164701 105164827 -79123835 + MIR3 SINE MIR 66 193 -15 2212 110 0 35 chr4 105164960 105165277 -79123385 + AluSx SINE Alu 1 306 -6 300 211 75 48 chr4 105165460 105165607 -79123055 - L1ME4a LINE L1 -1 6120 5970 7116 45 12 0 chr4 105165716 105166807 -79121855 - L1PA6 LINE L1 0 6154 5058 2322 92 0 0 chr4 105166807 105167099 -79121563 - AluSg SINE Alu -18 292 1 396 0 0 0 chr4 105167114 105167158 -79121504 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1524 140 31 0 chr4 105167161 105167311 -79121351 - AluSx SINE Alu -29 283 122 198 0 0 0 chr4 105167311 105167333 -79121329 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1524 140 31 0 chr4 105167333 105167410 -79121252 - AluSx SINE Alu -190 122 49 917 246 9 18 chr4 105167445 105167669 -79120993 - MER58A DNA MER1_type -2 222 1 258 105 0 0 chr4 105167858 105167896 -79120766 + (CA)n Simple_repeat Simple_repeat 2 39 0 375 316 23 35 chr4 105167961 105168132 -79120530 - L1MC4a LINE L1 -1856 5952 5784 330 262 98 25 chr4 105168135 105168257 -79120405 - L2 LINE L2 -5 3267 3137 882 165 0 0 chr4 105168266 105168399 -79120263 + AluJb SINE Alu 1 133 -179 1125 243 117 11 chr4 105168406 105168480 -79120182 - L2 LINE L2 -150 3163 3098 258 32 0 0 chr4 105168480 105168511 -79120151 + (TG)n Simple_repeat Simple_repeat 2 32 0 1125 243 117 11 chr4 105168511 105168922 -79119740 - L2 LINE L2 -215 3098 2613 6793 198 57 67 chr4 105169023 105169975 -79118687 - L1MB4 LINE L1 0 6180 5220 2049 144 3 37 chr4 105169975 105170323 -79118339 + MER1B DNA MER1_type 2 337 0 6793 198 57 67 chr4 105170323 105170676 -79117986 - L1MB4 LINE L1 -960 5220 4865 2023 142 7 0 chr4 105170676 105170972 -79117690 + AluSx SINE Alu 3 300 -12 6793 198 57 67 chr4 105170972 105172406 -79116256 - L1MB4 LINE L1 -1315 4865 3483 1673 197 7 10 chr4 105172406 105172706 -79115956 - AluJb SINE Alu -13 299 1 6793 198 57 67 chr4 105172706 105173335 -79115327 - L1MB4 LINE L1 -2697 3483 2849 551 100 0 0 chr4 105173637 105173717 -79114945 - MADE1 DNA Mariner 0 80 1 199 200 120 0 chr4 105174320 105174370 -79114292 + MIR SINE MIR 156 211 -51 192 125 0 0 chr4 105174426 105174458 -79114204 + (TA)n Simple_repeat Simple_repeat 1 32 0 1392 253 32 25 chr4 105174704 105175147 -79113515 - LTR40c LTR ERVL -18 447 2 22 0 0 0 chr4 105179199 105179221 -79109441 + AT_rich Low_complexity Low_complexity 1 22 0 219 36 0 0 chr4 105180823 105180851 -79107811 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr4 105181047 105181068 -79107594 + AT_rich Low_complexity Low_complexity 1 21 0 249 290 0 0 chr4 105182359 105182421 -79106241 - L2 LINE L2 -217 3055 2994 2256 109 0 22 chr4 105182577 105182888 -79105774 + AluSx SINE Alu 1 304 -8 2132 120 3 0 chr4 105184358 105184658 -79104004 - AluSq SINE Alu -12 301 1 21 0 0 0 chr4 105185781 105185802 -79102860 + AT_rich Low_complexity Low_complexity 1 21 0 688 284 33 0 chr4 105186301 105186512 -79102150 + MIR SINE MIR 18 235 -27 2138 138 34 23 chr4 105186541 105186895 -79101767 + THE1B LTR MaLR 7 364 0 22 0 0 0 chr4 105188408 105188430 -79100232 + AT_rich Low_complexity Low_complexity 1 22 0 249 182 0 0 chr4 105188430 105188485 -79100177 + (CA)n Simple_repeat Simple_repeat 2 56 0 400 93 0 0 chr4 105189685 105189739 -79098923 - Alu SINE Alu -18 294 241 1677 117 4 47 chr4 105189830 105190087 -79098575 + AluSp SINE Alu 63 308 -5 555 233 210 0 chr4 105191418 105191594 -79097068 + L2 LINE L2 2384 2596 -718 474 282 164 48 chr4 105191639 105192011 -79096651 + L2 LINE L2 2856 3270 -43 21 36 0 0 chr4 105192119 105192147 -79096515 + AT_rich Low_complexity Low_complexity 1 28 0 187 232 54 54 chr4 105198838 105198894 -79089768 + MIR SINE MIR 157 212 -50 632 95 21 11 chr4 105199081 105199176 -79089486 + MER4A LTR ERV1 3 98 -566 1990 134 3 22 chr4 105199176 105199528 -79089134 + MER4A LTR ERV1 261 664 0 12254 128 84 52 chr4 105199531 105199887 -79088775 + MER4A-int LTR ERV1 1 344 -6181 2143 202 57 62 chr4 105199887 105200502 -79088160 + LTR9 LTR ERV1 1 612 0 12254 128 84 52 chr4 105200502 105201295 -79087367 + MER4A-int LTR ERV1 344 1110 -5415 2114 141 0 0 chr4 105201295 105201593 -79087069 - AluSx SINE Alu -13 299 2 12254 128 84 52 chr4 105201593 105205480 -79083182 + MER4A-int LTR ERV1 1110 5856 -669 893 117 7 22 chr4 105205481 105205618 -79083044 + FLAM_C SINE Alu 9 143 0 264 318 27 7 chr4 105206211 105206359 -79082303 - L1M4 LINE L1 -2204 3942 3792 188 333 0 0 chr4 105206547 105206601 -79082061 - L2 LINE L2 -872 2442 2389 1969 133 0 23 chr4 105206645 105206945 -79081717 - MER4A LTR ERV1 0 664 372 628 86 21 11 chr4 105206992 105207085 -79081577 - MER4A LTR ERV1 -570 94 1 4459 87 70 13 chr4 105207090 105207779 -79080883 - MER4A-int LTR ERV1 -2 6596 5869 245 278 119 20 chr4 105207787 105207938 -79080724 + L1MB7 LINE L1 5617 5782 -339 1739 145 0 4 chr4 105208026 105208281 -79080381 + AluSx SINE Alu 46 299 -13 21 0 0 0 chr4 105208568 105208589 -79080073 + AT_rich Low_complexity Low_complexity 1 21 0 193 214 214 12 chr4 105208926 105209010 -79079652 - MIR SINE MIR -25 237 137 6900 102 23 8 chr4 105209021 105210132 -79078530 + L1MA3 LINE L1 5179 6305 0 265 247 124 10 chr4 105210148 105210245 -79078417 - MIR SINE MIR -151 111 4 358 60 134 0 chr4 105210346 105210413 -79078249 - L1PA16 LINE L1 -9 6157 6082 2028 149 13 0 chr4 105210715 105211023 -79077639 - AluSx SINE Alu 0 312 1 695 240 58 0 chr4 105211615 105211823 -79076839 + L1MB7 LINE L1 5955 6174 -10 2089 133 0 0 chr4 105211837 105212130 -79076532 + AluSx SINE Alu 3 295 -17 207 310 0 14 chr4 105212964 105213035 -79075627 + (TAAA)n Simple_repeat Simple_repeat 1 70 0 2370 93 0 10 chr4 105213425 105213737 -79074925 + AluSc SINE Alu 1 309 0 1157 193 120 33 chr4 105214346 105214620 -79074042 - AluJo SINE Alu -12 300 3 3379 108 12 8 chr4 105215964 105216466 -79072196 - L1PA13 LINE L1 0 6163 5660 44 35 0 0 chr4 105218038 105218096 -79070566 + AT_rich Low_complexity Low_complexity 1 58 0 320 302 19 0 chr4 105218584 105218690 -79069972 + L1ME LINE L1 5532 5639 -482 21 82 0 0 chr4 105218780 105218829 -79069833 + AT_rich Low_complexity Low_complexity 1 49 0 1078 158 0 12 chr4 105218948 105219119 -79069543 - FRAM SINE Alu -10 166 1 447 228 114 8 chr4 105219124 105219247 -79069415 - L2 LINE L2 -2 3311 3176 22 0 0 0 chr4 105220822 105220844 -79067818 + AT_rich Low_complexity Low_complexity 1 22 0 266 226 219 7 chr4 105221808 105221954 -79066708 - L1MC5 LINE L1 -50 7911 7735 201 333 43 78 chr4 105222353 105222608 -79066054 + L2 LINE L2 2807 3052 -220 2261 96 0 3 chr4 105223126 105223419 -79065243 - AluSx SINE Alu -19 293 2 667 130 30 0 chr4 105223944 105224044 -79064618 + U6 snRNA snRNA 1 103 -4 750 238 85 27 chr4 105224087 105224310 -79064352 - MIR SINE MIR -4 258 23 210 354 8 85 chr4 105224860 105224990 -79063672 + MIR SINE MIR 20 139 -69 2304 105 0 9 chr4 105225257 105225572 -79063090 - AluSq SINE Alu -1 312 1 188 309 191 12 chr4 105225754 105225838 -79062824 + MIR SINE MIR 33 131 -77 2156 232 14 24 chr4 105226073 105226738 -79061924 - L1 LINE L1 -2515 3631 2974 391 312 39 36 chr4 105226763 105227071 -79061591 - L1MEc LINE L1 -6073 323 15 2186 84 0 4 chr4 105227230 105227504 -79061158 + AluSx SINE Alu 11 303 0 181 0 0 0 chr4 105227504 105227524 -79061138 + (TAAAA)n Simple_repeat Simple_repeat 2 140 0 188 304 33 11 chr4 105227581 105227673 -79060989 + MIR3 SINE MIR 83 176 -32 245 315 122 68 chr4 105231459 105231738 -79056924 + L2 LINE L2 2976 3269 -3 877 115 25 38 chr4 105231827 105232049 -79056613 + L1MB3 LINE L1 5895 6182 -1 371 155 123 18 chr4 105232182 105232298 -79056364 - L1MB3 LINE L1 -307 5876 5786 1960 145 85 0 chr4 105232298 105232616 -79056046 + MER2 DNA MER2_type 1 345 0 1274 164 200 1 chr4 105232616 105232915 -79055747 - L1MB3 LINE L1 -396 5787 5435 339 290 134 87 chr4 105233006 105233430 -79055232 + L2 LINE L2 2494 2937 -377 306 263 12 12 chr4 105233630 105233710 -79054952 + L2 LINE L2 3185 3264 -49 21 57 0 0 chr4 105234729 105234764 -79053898 + AT_rich Low_complexity Low_complexity 1 35 0 2597 148 10 18 chr4 105234940 105235339 -79053323 + MSTD LTR MaLR 1 396 0 22 35 0 0 chr4 105235376 105235405 -79053257 + AT_rich Low_complexity Low_complexity 1 29 0 383 266 50 72 chr4 105236145 105236197 -79052465 - L1ME4a LINE L1 -119 6002 5950 2218 99 10 0 chr4 105236197 105236489 -79052173 - AluY SINE Alu -16 295 1 383 266 50 72 chr4 105236489 105236714 -79051948 - L1ME4a LINE L1 -171 5950 5731 2385 74 7 0 chr4 105237565 105237862 -79050800 + AluSx SINE Alu 1 299 -13 1838 155 9 29 chr4 105238753 105239069 -79049593 - AluJb SINE Alu -1 311 2 421 190 0 124 chr4 105239071 105239192 -79049470 - MER58 DNA MER1_type -2166 254 149 792 167 80 0 chr4 105239250 105239400 -79049262 - MER58 DNA MER1_type -2257 163 2 274 234 158 27 chr4 105239458 105239642 -79049020 + L1ME LINE L1 2269 2476 -3908 209 268 0 0 chr4 105239895 105239966 -79048696 + (TA)n Simple_repeat Simple_repeat 2 72 0 268 176 0 0 chr4 105239971 105240022 -79048640 + L1ME LINE L1 2722 2772 -3610 335 210 65 40 chr4 105240313 105240437 -79048225 + L1ME LINE L1 3166 3292 -3090 333 320 144 16 chr4 105240485 105240735 -79047927 + L1ME LINE L1 3798 4079 -2303 706 265 76 67 chr4 105241209 105241669 -79046993 + L1ME LINE L1 4975 5438 -944 367 250 56 39 chr4 105241742 105242033 -79046629 + L1ME LINE L1 5584 5877 -529 967 215 157 14 chr4 105242055 105242348 -79046314 + HAL1 LINE L1 1613 1947 -560 258 253 157 0 chr4 105242402 105242485 -79046177 + L2 LINE L2 3193 3288 -25 365 308 19 9 chr4 105242788 105242895 -79045767 - L2 LINE L2 0 3272 3165 1777 179 0 10 chr4 105242978 105243290 -79045372 - AluJo SINE Alu -3 309 1 189 74 0 0 chr4 105243515 105243542 -79045120 + (TA)n Simple_repeat Simple_repeat 2 28 0 353 321 9 0 chr4 105244569 105244678 -79043984 - MIR3 SINE MIR -23 185 76 1893 217 68 39 chr4 105244752 105245241 -79043421 - MLT1D LTR MaLR -2 503 1 1263 267 168 27 chr4 105245259 105245734 -79042928 - MLT1F LTR MaLR 0 542 1 2103 125 20 0 chr4 105246670 105246965 -79041697 + AluSx SINE Alu 1 301 -11 2006 108 0 44 chr4 105246966 105247263 -79041399 + AluSx SINE Alu 1 284 -28 207 0 0 0 chr4 105247274 105247297 -79041365 + (CAT)n Simple_repeat Simple_repeat 2 24 0 251 279 147 73 chr4 105247297 105247433 -79041229 - L3 LINE CR1 -21 1556 1411 21 0 0 0 chr4 105248249 105248270 -79040392 + AT_rich Low_complexity Low_complexity 1 21 0 217 342 151 20 chr4 105249329 105249481 -79039181 + MIR3 SINE MIR 16 187 -21 547 245 113 13 chr4 105250168 105250327 -79038335 + MER20B DNA MER1_type 2 176 -607 199 341 182 0 chr4 105250443 105250619 -79038043 - MIR SINE MIR -6 256 49 328 299 154 49 chr4 105252499 105252824 -79035838 + L2 LINE L2 2954 3312 -1 987 138 92 0 chr4 105253126 105253278 -79035384 - AluJb SINE Alu -13 299 134 1020 238 63 19 chr4 105253357 105253703 -79034959 + L1M4c LINE L1 1514 2222 -4161 2108 115 0 4 chr4 105253727 105254006 -79034656 + AluSc SINE Alu 1 278 -31 387 0 0 0 chr4 105254009 105254052 -79034610 + (CA)n Simple_repeat Simple_repeat 2 44 0 4296 243 23 14 chr4 105254124 105255437 -79033225 + L1M4c LINE L1 2104 3513 -2869 * 40950 68 11 3 chr4 105255427 105261523 -79027139 + L1PA5 LINE L1 5 6151 -3 6169 190 37 54 chr4 105261508 105262458 -79026204 + L1MA9 LINE L1 3250 4214 -2098 * 2238 116 0 0 chr4 105262458 105262760 -79025902 + AluSx SINE Alu 1 302 -10 6169 190 37 54 chr4 105262760 105263219 -79025443 + L1MA9 LINE L1 4214 4679 -1633 1205 153 30 68 chr4 105263219 105263454 -79025208 - AluJb SINE Alu -1 311 86 6169 190 37 54 chr4 105263454 105264559 -79024103 + L1MA9 LINE L1 4679 5774 -538 333 0 0 0 chr4 105264559 105264596 -79024066 + (CA)n Simple_repeat Simple_repeat 2 38 0 6169 190 37 54 chr4 105264596 105265121 -79023541 + L1MA9 LINE L1 5774 6306 -6 276 305 89 34 chr4 105265409 105265475 -79023187 + L1MC/D LINE L1 5282 5343 -842 6973 71 14 9 chr4 105265475 105265530 -79023132 - L1PA13 LINE L1 -19 6144 6091 4639 105 11 7 chr4 105265530 105266138 -79022524 + LTR9 LTR ERV1 1 611 -1 6973 71 14 9 chr4 105266138 105267251 -79021411 - L1PA13 LINE L1 -72 6091 4974 2119 114 10 0 chr4 105267251 105267540 -79021122 - AluSx SINE Alu -20 292 1 276 305 89 34 chr4 105267540 105267765 -79020897 + L1MC/D LINE L1 5342 5597 -588 1402 155 16 12 chr4 105267775 105268027 -79020635 + L1MD3 LINE L1 7730 7982 -13 218 200 0 0 chr4 105268149 105268189 -79020473 + A-rich Low_complexity Low_complexity 5 44 0 862 266 108 39 chr4 105268252 105268323 -79020339 - L2 LINE L2 -44 3269 3204 2075 133 0 7 chr4 105268323 105268625 -79020037 + AluSx SINE Alu 1 300 -12 862 266 108 39 chr4 105268625 105269085 -79019577 - L2 LINE L2 -109 3204 2708 1640 166 0 46 chr4 105269228 105269535 -79019127 - AluJb SINE Alu -9 303 11 2368 107 0 0 chr4 105269680 105269990 -79018672 + AluSx SINE Alu 1 310 -2 268 298 0 0 chr4 105270031 105270088 -79018574 - L3 LINE CR1 -5 1572 1516 207 69 0 0 chr4 105270160 105270189 -79018473 + (GA)n Simple_repeat Simple_repeat 2 30 0 223 235 39 0 chr4 105270322 105270373 -79018289 - L2 LINE L2 0 3313 3261 2218 103 3 20 chr4 105270455 105270755 -79017907 + AluSx SINE Alu 1 295 -17 196 220 60 0 chr4 105271035 105271085 -79017577 - L2 LINE L2 0 3313 3261 353 181 83 0 chr4 105271144 105271216 -79017446 + LTR8 LTR ERV1 1 78 -613 193 163 41 0 chr4 105271228 105271277 -79017385 + T-rich Low_complexity Low_complexity 2 52 0 304 141 31 16 chr4 105271282 105271346 -79017316 + MER87 LTR ERV1 85 149 -392 1136 227 84 55 chr4 105271516 105271934 -79016728 + LTR8A LTR ERV1 289 718 -9 289 279 197 27 chr4 105271956 105272103 -79016559 + MIR3 SINE MIR 24 195 -13 394 322 9 9 chr4 105272293 105272408 -79016254 + MIR SINE MIR 17 131 -77 515 239 8 26 chr4 105272440 105272557 -79016105 + MER5B DNA MER1_type 4 118 -60 529 282 87 46 chr4 105272588 105272972 -79015690 + L1MB8 LINE L1 4643 5078 -1068 2107 226 55 54 chr4 105272974 105273491 -79015171 + MLT1F LTR MaLR 1 521 -21 2729 91 21 16 chr4 105273491 105273864 -79014798 + THE1C LTR MaLR 1 375 0 2107 226 55 54 chr4 105273864 105273887 -79014775 + MLT1F LTR MaLR 521 542 0 1083 186 63 88 chr4 105273929 105274246 -79014416 + L1MC4 LINE L1 6769 7077 -965 1221 169 77 4 chr4 105274451 105274711 -79013951 + L1MB8 LINE L1 5337 5615 -565 674 196 28 0 chr4 105274737 105274844 -79013818 + FLAM_A SINE Alu 1 110 -32 774 171 53 0 chr4 105274847 105275017 -79013645 + L1MB8 LINE L1 5684 5862 -316 198 361 102 12 chr4 105275443 105275609 -79013053 + MIR SINE MIR 3 183 -79 934 269 27 16 chr4 105275611 105275867 -79012795 + MIR SINE MIR 2 260 -2 202 337 90 0 chr4 105277784 105277873 -79010789 - MIR3 SINE MIR -53 155 59 1943 158 0 10 chr4 105277911 105278215 -79010447 - AluJb SINE Alu -11 301 1 1915 135 76 15 chr4 105278286 105278627 -79010035 + MLT1A1 LTR MaLR 4 365 0 1155 182 66 111 chr4 105279268 105279647 -79009015 + MER57A LTR ERV1 42 403 0 722 257 53 45 chr4 105279650 105279895 -79008767 + MER57A-int LTR ERV1 3 249 -7288 22 0 0 0 chr4 105279937 105279959 -79008703 + AT_rich Low_complexity Low_complexity 1 22 0 2094 129 7 0 chr4 105279980 105280275 -79008387 + AluSx SINE Alu 16 312 0 1033 211 105 61 chr4 105280629 105281228 -79007434 + MER57B-int LTR ERV1 1029 2073 -2798 443 206 62 0 chr4 105281228 105281325 -79007337 + MER34 LTR ERV1 133 235 -307 351 135 14 108 chr4 105281327 105281401 -79007261 + MER34 LTR ERV1 476 542 0 3717 202 66 80 chr4 105281463 105281635 -79007027 + MER57B-int LTR ERV1 1914 2087 -5224 2254 105 0 7 chr4 105281635 105281929 -79006733 + AluSg SINE Alu 1 292 -18 3717 202 66 80 chr4 105281929 105283812 -79004850 + MER57B-int LTR ERV1 2087 5821 -1490 937 295 51 27 chr4 105283970 105284534 -79004128 + MER57B-int LTR ERV1 2450 6195 -1342 639 230 11 11 chr4 105284585 105284763 -79003899 + MER57B-int LTR ERV1 4281 4458 -1873 1700 150 3 10 chr4 105285043 105285337 -79003325 + L1MA6 LINE L1 6009 6300 0 4746 61 8 0 chr4 105286470 105287056 -79001606 + LTR10C LTR ERV1 1 591 0 599 319 33 5 chr4 105287135 105287348 -79001314 + MER57B-int LTR ERV1 6794 7012 -525 252 220 0 0 chr4 105287390 105287440 -79001222 + MER57B-int LTR ERV1 7487 7536 -1 235 299 13 14 chr4 105287444 105287609 -79001053 + MER57B LTR ERV1 1 189 -245 461 194 87 0 chr4 105287647 105287750 -79000912 + MER57A LTR ERV1 292 403 0 2149 64 47 17 chr4 105289454 105289751 -78998911 - AluSq SINE Alu -7 306 1 21 0 0 0 chr4 105289866 105289887 -78998775 + AT_rich Low_complexity Low_complexity 1 21 0 330 295 87 33 chr4 105291297 105291480 -78997182 + MIR SINE MIR 51 243 -19 2134 122 3 7 chr4 105291543 105291846 -78996816 + AluSx SINE Alu 1 302 -10 430 296 127 41 chr4 105293901 105294121 -78994541 + MIR SINE MIR 18 256 -6 2100 147 0 0 chr4 105295324 105295624 -78993038 + AluSx SINE Alu 3 302 -10 196 301 27 0 chr4 105296763 105296836 -78991826 - L2 LINE L2 -5 3267 3193 2040 132 0 7 chr4 105297000 105297296 -78991366 - AluSg SINE Alu -16 294 1 191 406 59 0 chr4 105298412 105298513 -78990149 - L2 LINE L2 -50 3222 3116 820 134 0 35 chr4 105298904 105299046 -78989616 + L1MA4 LINE L1 6164 6300 0 182 269 19 0 chr4 105299813 105299865 -78988797 - L2 LINE L2 -225 3047 2995 627 100 20 40 chr4 105300276 105300376 -78988286 - Tigger7 DNA MER2_type 0 2487 2390 * 1335 198 56 8 chr4 105300375 105300627 -78988035 - Tigger7 DNA MER2_type -466 267 4 1092 177 117 125 chr4 105300667 105300882 -78987780 + MLT1A1 LTR MaLR 1 213 -152 3155 123 53 29 chr4 105300882 105301393 -78987269 + MER1A DNA MER1_type 1 523 -4 1092 177 117 125 chr4 105301393 105301545 -78987117 + MLT1A1 LTR MaLR 213 365 0 644 290 20 10 chr4 105301614 105301814 -78986848 - MIR SINE MIR 0 262 61 189 0 0 0 chr4 105301824 105301845 -78986817 + (T)n Simple_repeat Simple_repeat 1 21 0 1285 179 91 73 chr4 105301845 105302186 -78986476 - MLT1A1 LTR MaLR -17 348 2 351 250 179 0 chr4 105302564 105302676 -78985986 - MIR SINE MIR -31 231 100 203 290 32 21 chr4 105302804 105302897 -78985765 + MIR SINE MIR 117 210 -52 180 77 0 0 chr4 105303749 105303775 -78984887 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 396 284 16 8 chr4 105305089 105305216 -78983446 + MER5B DNA MER1_type 35 162 -16 1030 173 34 0 chr4 105305238 105305417 -78983245 - MER5A DNA MER1_type 0 189 5 462 192 185 20 chr4 105305599 105305750 -78982912 + MIR SINE MIR 71 246 -16 2381 67 0 3 chr4 105305806 105306116 -78982546 - AluY SINE Alu 0 310 2 707 143 50 8 chr4 105308007 105308126 -78980536 + MER3 DNA MER1_type 86 209 0 250 317 60 8 chr4 105308135 105308330 -78980332 + MIR SINE MIR 2 261 -1 216 97 0 0 chr4 105308677 105308708 -78979954 + (T)n Simple_repeat Simple_repeat 1 31 0 404 114 139 0 chr4 105309369 105309448 -78979214 - L1MB4 LINE L1 0 6180 6091 832 100 50 53 chr4 105309453 105309561 -78979101 - L1MB4 LINE L1 -245 5933 5829 2365 97 10 0 chr4 105309561 105309861 -78978801 - AluSc SINE Alu -6 303 1 832 100 50 53 chr4 105309861 105309929 -78978733 - L1MB4 LINE L1 -349 5829 5762 1466 104 31 42 chr4 105309957 105310253 -78978409 - THE1B LTR MaLR 0 364 1 1978 117 21 83 chr4 105310255 105310598 -78978064 - L1MB4 LINE L1 -416 5764 5446 1731 179 16 32 chr4 105310598 105310911 -78977751 - AluJo SINE Alu -4 308 1 1978 117 21 83 chr4 105310911 105310952 -78977710 - L1MB4 LINE L1 -734 5446 5404 4741 52 8 8 chr4 105311031 105311622 -78977040 - LTR10C LTR ERV1 0 591 1 2190 85 3 10 chr4 105311650 105311943 -78976719 - AluY SINE Alu -18 293 3 1077 181 83 24 chr4 105312321 105312575 -78976087 + MER33 DNA MER1_type 10 278 -46 282 263 9 0 chr4 105313350 105313368 -78975294 - L1MA4A LINE L1 0 6303 6286 5193 130 31 1 chr4 105313368 105314182 -78974480 - L1PB4 LINE L1 -1 6155 5318 307 276 166 37 chr4 105315378 105315541 -78973121 + MIR3 SINE MIR 16 199 -9 194 324 0 42 chr4 105315529 105315600 -78973062 + MIR SINE MIR 109 176 -86 * 284 224 0 0 chr4 105315612 105315670 -78972992 - L2 LINE L2 -5 3267 3210 380 242 69 108 chr4 105316045 105316271 -78972391 + Charlie8 DNA MER1_type 219 434 -1983 2287 89 20 3 chr4 105316271 105316563 -78972099 - AluSx SINE Alu -15 297 1 380 242 69 108 chr4 105316563 105316613 -78972049 + Charlie8 DNA MER1_type 434 484 -1933 25 31 0 0 chr4 105318044 105318076 -78970586 + AT_rich Low_complexity Low_complexity 1 32 0 1673 177 6 19 chr4 105318906 105319217 -78969445 + AluJb SINE Alu 5 311 -1 474 18 0 0 chr4 105320880 105320935 -78967727 + (TG)n Simple_repeat Simple_repeat 2 56 0 210 218 127 0 chr4 105321544 105321599 -78967063 - MIR SINE MIR -155 107 46 2314 108 0 3 chr4 105321703 105321999 -78966663 - AluSc SINE Alu -14 295 1 950 172 81 6 chr4 105323734 105323908 -78964754 - MER58A DNA MER1_type 0 224 38 1062 226 43 0 chr4 105323998 105324233 -78964429 + MIR SINE MIR 5 249 -13 1869 124 42 3 chr4 105324315 105324598 -78964064 + AluJb SINE Alu 2 295 -17 2279 105 3 0 chr4 105324741 105325046 -78963616 - AluSg SINE Alu -4 306 1 210 244 174 0 chr4 105325975 105326061 -78962601 - MIR SINE MIR -51 211 111 242 287 73 15 chr4 105329968 105330104 -78958558 - L2 LINE L2 -244 3069 2926 295 291 23 0 chr4 105330201 105330287 -78958375 + L2 LINE L2 2885 2972 -300 207 0 0 0 chr4 105330552 105330575 -78958087 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 1948 157 3 0 chr4 105331403 105331696 -78956966 + AluSx SINE Alu 1 294 -18 512 202 54 35 chr4 105332210 105332390 -78956272 - L1MD2 LINE L1 -33 7805 6072 259 276 189 0 chr4 105334120 105334247 -78954415 - MIR3 SINE MIR -13 195 45 2168 118 0 7 chr4 105335353 105335650 -78953012 - AluSg SINE Alu -15 295 1 2408 102 0 0 chr4 105335688 105335992 -78952670 - AluSg SINE Alu -6 304 1 2383 100 0 3 chr4 105336378 105336689 -78951973 + AluSg SINE Alu 1 310 0 353 260 199 15 chr4 105336950 105337146 -78951516 - MARNA DNA Mariner -337 249 18 374 319 98 15 chr4 105337314 105337518 -78951144 + MIR SINE MIR 18 238 -24 282 29 0 0 chr4 105337959 105337994 -78950668 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2072 107 0 0 chr4 105337996 105338258 -78950404 - AluSx SINE Alu -28 284 23 722 153 8 8 chr4 105338461 105338585 -78950077 + FLAM_A SINE Alu 1 124 -9 22 0 0 0 chr4 105339131 105339153 -78949509 + AT_rich Low_complexity Low_complexity 1 22 0 15285 23 8 0 chr4 105339153 105341696 -78946966 - L1PA3 LINE L1 -2 6153 3597 198 0 0 0 chr4 105341724 105341746 -78946916 + (CA)n Simple_repeat Simple_repeat 1 22 0 23 0 0 0 chr4 105343699 105343722 -78944940 + AT_rich Low_complexity Low_complexity 1 23 0 848 211 77 28 chr4 105345373 105345620 -78943042 + L3b LINE CR1 1108 1366 -217 200 194 0 0 chr4 105346575 105346611 -78942051 + A-rich Low_complexity Low_complexity 4 39 0 226 270 18 99 chr4 105347643 105347754 -78940908 - MER112 DNA MER1_type -156 104 3 195 321 71 0 chr4 105351345 105351457 -78937205 - MIR3 SINE MIR -50 158 39 316 223 80 8 chr4 105351610 105351734 -78936928 - MIR SINE MIR -47 161 17 306 289 38 50 chr4 105352807 105352966 -78935696 + MIR SINE MIR 16 172 -90 180 300 33 0 chr4 105353104 105353164 -78935498 + MIR SINE MIR 62 123 -139 245 188 31 62 chr4 105354780 105354844 -78933818 + MLT1K LTR MaLR 188 249 -339 2171 119 0 6 chr4 105356563 105356875 -78931787 - AluSg SINE Alu 0 310 1 186 305 54 116 chr4 105357290 105357549 -78931113 + L2 LINE L2 3016 3258 -14 1439 200 11 18 chr4 105358046 105358321 -78930341 - AluJo SINE Alu -39 273 1 1401 201 64 11 chr4 105358403 105358686 -78929976 - AluJb SINE Alu -14 298 1 189 353 98 13 chr4 105359087 105359240 -78929422 - MIR3 SINE MIR -23 185 20 321 264 199 49 chr4 105359344 105359590 -78929072 + L2 LINE L2 3023 3305 -8 24 53 0 0 chr4 105360321 105360359 -78928303 + AT_rich Low_complexity Low_complexity 1 38 0 241 291 35 0 chr4 105360773 105360859 -78927803 - MIR SINE MIR -85 177 89 241 345 72 40 chr4 105361162 105361539 -78927123 - L2 LINE L2 -448 2866 2478 33 56 0 0 chr4 105361668 105361722 -78926940 + AT_rich Low_complexity Low_complexity 1 54 0 246 32 0 0 chr4 105363352 105363383 -78925279 + (CA)n Simple_repeat Simple_repeat 1 31 0 2050 117 3 21 chr4 105363892 105364183 -78924479 + AluSg SINE Alu 1 286 -24 21 0 0 0 chr4 105364541 105364562 -78924100 + AT_rich Low_complexity Low_complexity 1 21 0 1748 115 17 0 chr4 105364603 105364837 -78923825 - AluSx SINE Alu -21 291 54 2123 128 7 0 chr4 105366220 105366517 -78922145 - AluSq SINE Alu -14 299 1 2247 100 4 0 chr4 105366673 105366989 -78921673 + AluSp SINE Alu 1 317 0 403 261 37 30 chr4 105367030 105367164 -78921498 + MIR SINE MIR 20 154 -108 1637 199 51 11 chr4 105367642 105367993 -78920669 + MLT1A1 LTR MaLR 1 365 0 439 282 107 83 chr4 105368244 105368363 -78920299 + L1ME4a LINE L1 5487 5602 -519 2213 108 3 3 chr4 105368363 105368658 -78920004 + AluSx SINE Alu 1 295 -17 439 282 107 83 chr4 105368658 105369092 -78919570 + L1ME4a LINE L1 5602 6053 -68 286 314 25 13 chr4 105370507 105370666 -78917996 + (CA)n Simple_repeat Simple_repeat 1 161 0 234 0 0 0 chr4 105371595 105371621 -78917041 + (TTG)n Simple_repeat Simple_repeat 2 27 0 740 195 81 0 chr4 105371626 105371775 -78916887 - AluJo SINE Alu -30 282 122 2037 150 3 0 chr4 105371801 105372095 -78916567 + AluSx SINE Alu 5 299 -13 1682 79 0 0 chr4 105372525 105372739 -78915923 - AluY SINE Alu -19 292 79 28 71 0 0 chr4 105373114 105373170 -78915492 + AT_rich Low_complexity Low_complexity 1 56 0 185 123 0 140 chr4 105374460 105374517 -78914145 + L2 LINE L2 3224 3272 0 251 309 158 51 chr4 105374702 105375013 -78913649 + L2 LINE L2 2890 3233 -80 2129 108 0 30 chr4 105375074 105375369 -78913293 - AluSx SINE Alu -24 288 3 1734 149 4 22 chr4 105375468 105375743 -78912919 + AluSx SINE Alu 37 306 -6 734 174 0 0 chr4 105375753 105375874 -78912788 + AluJo SINE Alu 2 122 -190 681 173 12 60 chr4 105375902 105376503 -78912159 + SVA Other Other 442 601 -785 1038 164 0 33 chr4 105376621 105376804 -78911858 + AluJo SINE Alu 129 305 -7 186 133 0 0 chr4 105381149 105381179 -78907483 + (GA)n Simple_repeat Simple_repeat 2 31 0 1909 116 26 0 chr4 105383811 105384110 -78904552 - AluSx SINE Alu 0 314 9 310 292 0 0 chr4 105384115 105384180 -78904482 - MIR3 SINE MIR -45 163 99 26 30 0 0 chr4 105384968 105385001 -78903661 + AT_rich Low_complexity Low_complexity 1 33 0 680 143 16 40 chr4 105385001 105385127 -78903535 - FLAM_A SINE Alu -10 123 1 280 271 0 0 chr4 105385137 105385196 -78903466 - L2 LINE L2 -2 3311 3253 264 266 355 0 chr4 105385255 105385424 -78903238 + MIR SINE MIR 33 261 -1 414 39 0 0 chr4 105385554 105385606 -78903056 + (CA)n Simple_repeat Simple_repeat 2 53 0 268 360 63 17 chr4 105386476 105386651 -78902011 + L2 LINE L2 2229 2411 -903 2043 124 14 14 chr4 105388759 105389049 -78899613 - AluSg SINE Alu -20 290 1 25 51 0 0 chr4 105389059 105389098 -78899564 + AT_rich Low_complexity Low_complexity 1 39 0 1077 163 80 4 chr4 105389337 105389601 -78899061 - L1MA4 LINE L1 -1 6299 6016 283 234 149 32 chr4 105391536 105391630 -78897032 - L2 LINE L2 -18 3295 3191 246 32 0 0 chr4 105391686 105391717 -78896945 + (A)n Simple_repeat Simple_repeat 1 31 0 211 204 0 23 chr4 105392114 105392158 -78896504 - MIR SINE MIR -150 58 16 254 323 83 0 chr4 105392379 105392475 -78896187 - MIR3 SINE MIR -95 113 10 220 303 0 0 chr4 105392493 105392559 -78896103 + A-rich Low_complexity Low_complexity 1 66 0 706 217 197 10 chr4 105392658 105392861 -78895801 - MIR SINE MIR -6 256 16 300 240 221 59 chr4 105394034 105394238 -78894424 - MIR SINE MIR -6 256 20 184 293 73 0 chr4 105394489 105394571 -78894091 - MIR SINE MIR -65 197 110 251 137 0 20 chr4 105395000 105395051 -78893611 + (GGA)n Simple_repeat Simple_repeat 3 52 0 5967 139 19 5 chr4 105395336 105396502 -78892160 + L1MA3 LINE L1 5124 6304 -1 1071 184 82 0 chr4 105397723 105398011 -78890651 + MER33 DNA MER1_type 1 302 -22 326 284 23 0 chr4 105398260 105398348 -78890314 + L1MC4 LINE L1 6614 6703 -1339 363 23 0 0 chr4 105398349 105398393 -78890269 + (TA)n Simple_repeat Simple_repeat 1 44 0 887 88 0 16 chr4 105398393 105398518 -78890144 - L1PA7 LINE L1 -16 6138 6016 502 258 103 21 chr4 105399394 105399588 -78889074 - MER63A DNA MER1_type 0 210 1 1845 114 4 11 chr4 105400590 105400854 -78887808 + AluSp SINE Alu 42 303 -10 213 318 19 28 chr4 105401658 105401765 -78886897 - MIR SINE MIR -50 212 107 1918 182 134 6 chr4 105402621 105402930 -78885732 + L1MB7 LINE L1 5569 5837 -347 221 0 35 0 chr4 105402930 105402959 -78885703 + (TATATG)n Simple_repeat Simple_repeat 1 30 0 1918 182 134 6 chr4 105402959 105403133 -78885529 + L1MB7 LINE L1 5837 6114 -70 215 84 105 0 chr4 105403195 105403290 -78885372 + (TA)n Simple_repeat Simple_repeat 2 106 0 2365 97 0 0 chr4 105403951 105404250 -78884412 - AluSx SINE Alu -13 299 1 218 320 10 21 chr4 105404664 105404761 -78883901 - MIR3 SINE MIR -14 194 99 210 364 23 11 chr4 105405375 105405463 -78883199 - MIR SINE MIR -100 108 20 23 0 0 0 chr4 105407286 105407309 -78881353 + AT_rich Low_complexity Low_complexity 1 23 0 934 274 20 8 chr4 105408138 105408386 -78880276 + MIR SINE MIR 2 252 -10 308 264 171 39 chr4 105409430 105409559 -78879103 + MIR SINE MIR 41 186 -76 1681 152 32 11 chr4 105410399 105410676 -78877986 + AluJb SINE Alu 1 283 -29 863 238 47 30 chr4 105411236 105411471 -78877191 + MIR SINE MIR 19 257 -5 440 255 51 30 chr4 105414504 105414610 -78874052 - MIR3 SINE MIR -15 193 78 447 19 0 0 chr4 105414610 105414662 -78874000 + (CA)n Simple_repeat Simple_repeat 2 53 0 440 255 51 30 chr4 105414662 105414689 -78873973 - MIR3 SINE MIR -130 78 53 1910 154 7 3 chr4 105415014 105415307 -78873355 + AluJb SINE Alu 1 294 -18 706 246 105 9 chr4 105415457 105415685 -78872977 + MIR SINE MIR 1 250 -12 345 236 56 0 chr4 105416578 105416667 -78871995 - MIR3 SINE MIR -17 191 98 529 306 100 35 chr4 105416723 105416952 -78871710 - MIR SINE MIR -4 258 15 4937 191 105 30 chr4 105418530 105418771 -78869891 - Charlie1a DNA MER1_type -1308 1453 1231 270 81 0 0 chr4 105418771 105418808 -78869854 + (TG)n Simple_repeat Simple_repeat 2 38 0 4937 191 105 30 chr4 105418808 105418822 -78869840 - Charlie1a DNA MER1_type -1530 1231 1219 1801 163 4 0 chr4 105418822 105419098 -78869564 - AluJo SINE Alu -35 277 1 4937 191 105 30 chr4 105419098 105420189 -78868473 - Charlie1a DNA MER1_type -1542 1219 5 276 232 56 16 chr4 105420551 105420676 -78867986 - L1MEd LINE L1 -3097 3032 2903 386 275 84 72 chr4 105420827 105421078 -78867584 - L1MEd LINE L1 -3467 2662 2409 319 206 176 10 chr4 105421143 105421245 -78867417 - L1MEd LINE L1 -5044 1075 957 1948 140 3 29 chr4 105421245 105421552 -78867110 - AluJo SINE Alu -13 299 1 510 234 135 0 chr4 105421572 105421713 -78866949 - MER3 DNA MER1_type 0 209 50 489 316 67 44 chr4 105421853 105422195 -78866467 - L1MEd LINE L1 -5447 672 323 234 0 0 0 chr4 105422200 105422226 -78866436 + (T)n Simple_repeat Simple_repeat 1 26 0 252 219 31 0 chr4 105422406 105422470 -78866192 + (TATG)n Simple_repeat Simple_repeat 1 66 0 1598 151 37 33 chr4 105422625 105422924 -78865738 + AluJo SINE Alu 1 300 -12 380 226 137 70 chr4 105423005 105423141 -78865521 - MER46C DNA MER2_type -21 317 191 2309 103 0 0 chr4 105423141 105423432 -78865230 - AluSg SINE Alu -17 293 3 380 226 137 70 chr4 105423432 105423565 -78865097 - MER46C DNA MER2_type -147 191 30 2006 138 3 0 chr4 105423913 105424229 -78864433 - AluSx SINE Alu 0 317 1 22 35 0 0 chr4 105425246 105425275 -78863387 + AT_rich Low_complexity Low_complexity 1 29 0 2023 143 0 7 chr4 105425287 105425595 -78863067 + AluSx SINE Alu 1 306 -6 240 256 244 0 chr4 105425744 105425822 -78862840 - MER5A DNA MER1_type -83 106 10 29 28 0 0 chr4 105425984 105426020 -78862642 + AT_rich Low_complexity Low_complexity 1 36 0 901 98 148 44 chr4 105426085 105426190 -78862472 + MER30 DNA MER1_type 1 94 -136 324 0 0 0 chr4 105426190 105426226 -78862436 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 901 98 148 44 chr4 105426226 105426303 -78862359 + MER30 DNA MER1_type 94 202 -28 703 238 72 0 chr4 105426935 105427116 -78861546 + MER20 DNA MER1_type 7 200 -19 623 248 45 6 chr4 105427126 105427283 -78861379 + MER5A DNA MER1_type 1 163 -26 207 0 0 0 chr4 105427564 105427587 -78861075 + (TG)n Simple_repeat Simple_repeat 2 24 0 192 349 110 71 chr4 105427611 105427866 -78860796 - L2 LINE L2 -84 3188 2924 1986 131 3 36 chr4 105431129 105431435 -78857227 + AluSx SINE Alu 1 296 -16 677 194 57 0 chr4 105431705 105431829 -78856833 - FLAM_A SINE Alu -2 131 1 588 152 0 40 chr4 105431852 105432096 -78856566 + AluJo SINE Alu 9 299 -13 619 162 40 147 chr4 105433241 105433351 -78855311 - MER5A DNA MER1_type -12 177 57 1741 161 0 10 chr4 105433351 105433643 -78855019 - AluJb SINE Alu -1 311 23 619 162 40 147 chr4 105433643 105433666 -78854996 - MER5A DNA MER1_type -132 57 33 1997 97 0 0 chr4 105433666 105433924 -78854738 - AluSg SINE Alu -10 300 43 619 162 40 147 chr4 105433924 105433987 -78854675 - MER5A DNA MER1_type -156 33 1 532 168 140 37 chr4 105434255 105434362 -78854300 - FLAM_A SINE Alu -19 123 6 471 294 102 77 chr4 105434394 105434614 -78854048 - L3 LINE CR1 -18 1559 1327 1061 260 79 16 chr4 105434614 105434929 -78853733 - MER46C DNA MER2_type 0 338 4 471 294 102 77 chr4 105434929 105435031 -78853631 - L3 LINE CR1 -250 1327 1229 524 270 74 6 chr4 105435323 105435530 -78853132 - MIR SINE MIR -1 261 34 459 321 149 20 chr4 105435585 105436143 -78852519 + L3 LINE CR1 629 1258 -319 1214 90 0 6 chr4 105437915 105438082 -78850580 + L1PB1 LINE L1 5948 6113 -38 362 221 228 0 chr4 105439032 105439177 -78849485 - MIR SINE MIR -80 182 5 231 114 45 68 chr4 105441203 105441247 -78847415 + L1M2a LINE L1 744 786 -6382 21 0 0 0 chr4 105443222 105443243 -78845419 + AT_rich Low_complexity Low_complexity 1 21 0 494 315 109 15 chr4 105444838 105445105 -78843557 - L3b LINE CR1 -89 1494 1203 222 37 0 0 chr4 105445563 105445590 -78843072 + (A)n Simple_repeat Simple_repeat 1 27 0 549 224 77 39 chr4 105445757 105445913 -78842749 + Charlie7 DNA MER1_type 32 193 -2419 502 257 32 27 chr4 105445923 105446110 -78842552 + Charlie7 DNA MER1_type 422 609 -2003 238 214 167 0 chr4 105446126 105446210 -78842452 + Charlie7 DNA MER1_type 2504 2601 -11 1733 172 5 59 chr4 105446345 105446717 -78841945 + L1MB8 LINE L1 5815 6166 -12 842 220 65 47 chr4 105447281 105447513 -78841149 - MER46A DNA MER2_type 0 236 1 512 242 40 0 chr4 105447721 105447820 -78840842 + AluJb SINE Alu 174 276 -36 335 300 91 0 chr4 105448511 105448621 -78840041 - MIR SINE MIR -131 131 12 25 0 0 0 chr4 105448968 105448993 -78839669 + AT_rich Low_complexity Low_complexity 1 25 0 409 282 53 59 chr4 105449228 105449398 -78839264 + L2 LINE L2 3102 3270 -2 2655 27 0 0 chr4 105449876 105450175 -78838487 + AluY SINE Alu 1 299 -12 300 294 78 39 chr4 105450285 105450438 -78838224 + L1MC4 LINE L1 6614 6772 -1270 480 241 24 77 chr4 105451363 105451570 -78837092 + MIR SINE MIR 41 236 -26 541 250 64 29 chr4 105452297 105452437 -78836225 + MIR SINE MIR 100 244 -18 478 320 79 83 chr4 105452616 105453059 -78835603 - L2 LINE L2 -5 3267 2827 321 350 8 8 chr4 105453210 105453327 -78835335 + MIR3 SINE MIR 10 126 -82 270 313 50 31 chr4 105453350 105453510 -78835152 - MER5A DNA MER1_type 0 189 27 292 179 198 47 chr4 105453537 105453643 -78835019 - MIR3 SINE MIR -72 136 15 639 261 126 57 chr4 105454324 105454799 -78833863 + L1ME4a LINE L1 5598 6105 -16 187 294 64 55 chr4 105455027 105455136 -78833526 + MIR SINE MIR 126 235 -27 207 0 0 0 chr4 105455141 105455164 -78833498 + (A)n Simple_repeat Simple_repeat 1 23 0 202 287 10 79 chr4 105456432 105456533 -78832129 - MIR3 SINE MIR -105 103 10 186 189 38 57 chr4 105457232 105457285 -78831377 - L2 LINE L2 -1 3271 3220 1179 191 82 0 chr4 105457448 105457705 -78830957 + L1PB4 LINE L1 5879 6156 0 189 0 0 0 chr4 105457846 105457867 -78830795 + (TC)n Simple_repeat Simple_repeat 2 22 0 408 20 0 0 chr4 105457877 105457926 -78830736 + (CA)n Simple_repeat Simple_repeat 2 50 0 1519 93 42 5 chr4 105457930 105458144 -78830518 - AluSx SINE Alu -43 269 48 324 233 80 98 chr4 105467589 105467752 -78820910 + L1M2 LINE L1 708 867 -5982 396 0 0 0 chr4 105468052 105468096 -78820566 + (CA)n Simple_repeat Simple_repeat 2 45 0 26 30 0 0 chr4 105468599 105468632 -78820030 + GC_rich Low_complexity Low_complexity 1 33 0 255 214 18 0 chr4 105469179 105469235 -78819427 + GA-rich Low_complexity Low_complexity 2 58 0 23 0 0 0 chr4 105474046 105474069 -78814593 + GC_rich Low_complexity Low_complexity 1 23 0 370 192 23 77 chr4 105474925 105475055 -78813607 + MIR SINE MIR 36 158 -104 2279 116 0 0 chr4 105476072 105476382 -78812280 - AluSx SINE Alu -2 310 1 1470 152 91 0 chr4 105477918 105478161 -78810501 - AluSx SINE Alu -15 297 33 209 262 49 0 chr4 105478182 105478243 -78810419 + L2 LINE L2 2645 2708 -606 219 318 0 0 chr4 105478287 105478353 -78810309 + L2 LINE L2 2853 2918 -395 372 43 0 0 chr4 105478367 105478413 -78810249 + (CA)n Simple_repeat Simple_repeat 2 47 0 504 293 84 59 chr4 105478429 105478787 -78809875 + L2 LINE L2 2947 3313 0 1146 154 123 58 chr4 105478918 105479140 -78809522 - MER33 DNA MER1_type -2261 324 77 2443 47 9 44 chr4 105479140 105479458 -78809204 - AluY SINE Alu -3 308 2 1146 154 123 58 chr4 105479458 105479528 -78809134 - MER33 DNA MER1_type -2508 77 13 2255 111 0 3 chr4 105480377 105480683 -78807979 + AluSq SINE Alu 1 305 -8 1848 168 16 3 chr4 105480718 105481200 -78807462 + AluJo SINE Alu 1 486 0 605 216 17 12 chr4 105481024 105481675 -78806987 + GA-rich Low_complexity Low_complexity 1 654 0 511 246 53 0 chr4 105481887 105482001 -78806661 + L2 LINE L2 3184 3303 -10 249 207 74 91 chr4 105482007 105482098 -78806564 + L1ME4a LINE L1 5974 6064 -57 2121 130 3 0 chr4 105482098 105482397 -78806265 - AluSx SINE Alu -12 300 1 249 207 74 91 chr4 105482397 105482426 -78806236 + L1ME4a LINE L1 6064 6092 -29 24 32 0 0 chr4 105482430 105482461 -78806201 + AT_rich Low_complexity Low_complexity 1 31 0 1431 111 111 0 chr4 105482657 105482864 -78805798 - MER30 DNA MER1_type 0 230 1 263 143 221 13 chr4 105482892 105482969 -78805693 - L1ME2 LINE L1 0 6164 6072 243 186 0 0 chr4 105482981 105483024 -78805638 - MER57B LTR ERV1 -66 368 326 457 181 12 0 chr4 105483031 105483114 -78805548 - L1ME2 LINE L1 -67 6097 6014 251 114 23 0 chr4 105483848 105483892 -78804770 + CT-rich Low_complexity Low_complexity 2 46 0 203 125 25 0 chr4 105484963 105485003 -78803659 + A-rich Low_complexity Low_complexity 4 44 0 3096 268 90 20 chr4 105485837 105486480 -78802182 + L2 LINE L2 1811 2408 -905 2257 105 0 19 chr4 105486480 105486793 -78801869 - AluSx SINE Alu -5 307 1 3096 268 90 20 chr4 105486793 105486973 -78801689 + L2 LINE L2 2408 2574 -739 5011 136 36 45 chr4 105486973 105487105 -78801557 - MER4D LTR ERV1 0 903 771 1475 160 0 44 chr4 105487105 105487233 -78801429 - AluJb SINE Alu -59 253 140 2463 28 41 0 chr4 105487233 105487524 -78801138 - AluY SINE Alu -8 303 1 1475 160 0 44 chr4 105487524 105487645 -78801017 - AluJb SINE Alu -172 140 15 5011 136 36 45 chr4 105487645 105488423 -78800239 - MER4D LTR ERV1 -132 771 1 3096 268 90 20 chr4 105488423 105489008 -78799654 + L2 LINE L2 2574 3313 0 399 216 20 20 chr4 105489488 105489590 -78799072 - MER113 DNA MER1_type? -32 489 388 1657 284 25 10 chr4 105489597 105490076 -78798586 + LTR16C LTR ERVL 1 486 -5 821 237 84 34 chr4 105490089 105490410 -78798252 - MER113 DNA MER1_type? -179 342 6 270 256 23 12 chr4 105490683 105490769 -78797893 - L1ME4a LINE L1 -68 6053 5967 205 238 0 0 chr4 105490932 105490974 -78797688 + CT-rich Low_complexity Low_complexity 1 42 0 192 250 69 78 chr4 105491364 105491412 -78797250 + L2 LINE L2 2635 2682 -632 2248 110 0 3 chr4 105491412 105491712 -78796950 - AluSx SINE Alu -13 299 1 192 250 69 78 chr4 105491712 105491779 -78796883 + L2 LINE L2 2682 2749 -565 281 320 45 67 chr4 105492088 105492357 -78796305 + L2 LINE L2 2927 3189 -83 362 180 135 34 chr4 105492477 105492566 -78796096 - MIR SINE MIR -114 148 51 1955 175 42 19 chr4 105492905 105493380 -78795282 - L1M2 LINE L1 -634 5657 5176 292 157 43 0 chr4 105493401 105493471 -78795191 + CT-rich Low_complexity Low_complexity 1 73 0 413 203 120 75 chr4 105493471 105493604 -78795058 - AluSg/x SINE Alu -3 307 169 242 250 0 0 chr4 105493604 105493652 -78795010 + MER2 DNA MER2_type 282 329 -16 329 224 80 109 chr4 105493667 105493868 -78794794 - HAL1 LINE L1 -910 1597 1403 3191 216 94 18 chr4 105494039 105494967 -78793695 + L1PBa LINE L1 6 1003 -5860 2223 102 3 3 chr4 105496067 105496361 -78792301 - AluSg SINE Alu -14 296 3 333 308 90 8 chr4 105496548 105496681 -78791981 + MIR3 SINE MIR 51 194 -14 574 119 0 34 chr4 105498003 105498121 -78790541 + (TTCC)n Simple_repeat Simple_repeat 4 117 0 2185 104 10 7 chr4 105498129 105498437 -78790225 - AluSq SINE Alu -4 309 1 297 171 45 102 chr4 105498460 105498548 -78790114 - L1MCc LINE L1 -5978 953 871 38 0 0 0 chr4 105499748 105499786 -78788876 + AT_rich Low_complexity Low_complexity 1 38 0 1035 65 0 0 chr4 105499786 105499910 -78788752 - L1PA3 LINE L1 -3 6152 6029 434 39 0 0 chr4 105499910 105499961 -78788701 + L1PA5 LINE L1 5842 5892 -262 802 167 16 0 chr4 105500211 105500337 -78788325 + FLAM_C SINE Alu 3 130 -13 183 100 0 0 chr4 105500339 105500369 -78788293 + (TAAAA)n Simple_repeat Simple_repeat 3 32 0 1578 207 3 16 chr4 105500620 105500649 -78788013 + L1PBa LINE L1 2029 2057 -4795 4261 38 23 2 chr4 105500649 105501129 -78787533 - LTR2B LTR ERV1 0 490 1 1578 207 3 16 chr4 105501129 105501418 -78787244 + L1PBa LINE L1 2057 2343 -4509 783 265 74 32 chr4 105502123 105502473 -78786189 - L1MCc LINE L1 -5708 714 3 233 353 29 29 chr4 105502568 105502670 -78785992 + MIR SINE MIR 39 140 -68 23 33 0 0 chr4 105502762 105502792 -78785870 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr4 105502818 105502847 -78785815 + AT_rich Low_complexity Low_complexity 1 29 0 3330 163 22 29 chr4 105503543 105504013 -78784649 - L1M1 LINE L1 -4900 2665 2200 854 162 0 183 chr4 105504013 105504248 -78784414 - 7SK RNA RNA 0 193 2 3330 163 22 29 chr4 105504248 105504466 -78784196 - L1M1 LINE L1 -5365 2200 1982 3349 166 46 5 chr4 105504673 105505607 -78783055 + L1PA15 LINE L1 4927 5900 -265 351 335 134 6 chr4 105506184 105506348 -78782314 + L2 LINE L2 3088 3272 0 195 265 85 146 chr4 105506477 105506737 -78781925 + L2 LINE L2 2836 3079 -193 235 273 0 30 chr4 105506752 105506818 -78781844 + L2 LINE L2 3250 3313 0 203 0 37 0 chr4 105507018 105507045 -78781617 + (GGAA)n Simple_repeat Simple_repeat 4 31 0 997 70 14 0 chr4 105507064 105507207 -78781455 + (GGAA)n Simple_repeat Simple_repeat 2 146 0 669 123 0 0 chr4 105507231 105507337 -78781325 + (GGAA)n Simple_repeat Simple_repeat 2 107 0 701 176 82 53 chr4 105508552 105508722 -78779940 - MER96 DNA MER1_type 0 175 1 597 205 17 8 chr4 105509038 105509155 -78779507 + MER45A DNA AcHobo 51 168 -10 954 288 56 60 chr4 105509249 105509746 -78778916 + L2 LINE L2 2767 3259 -13 436 229 58 0 chr4 105511265 105511380 -78777282 + MIR SINE MIR 54 176 -65 622 231 67 67 chr4 105511401 105511626 -78777036 - L2 LINE L2 -4 3309 3085 279 122 0 0 chr4 105511632 105511673 -78776989 - LTR16A LTR ERVL -3 447 407 984 275 78 8 chr4 105511716 105511960 -78776702 - LTR16A LTR ERVL -157 293 33 857 303 21 15 chr4 105512075 105512372 -78776290 - L2 LINE L2 -234 3079 2782 250 307 13 0 chr4 105512360 105512435 -78776227 + MIR SINE MIR 159 234 -28 * 270 0 0 0 chr4 105512451 105512481 -78776181 + (CAT)n Simple_repeat Simple_repeat 2 31 0 24 67 0 0 chr4 105512585 105512630 -78776032 + AT_rich Low_complexity Low_complexity 1 45 0 390 167 14 0 chr4 105512866 105512938 -78775724 + MER116 DNA Mariner 5 77 -3 261 239 169 54 chr4 105513434 105513564 -78775098 - L1MC4 LINE L1 0 8042 7898 242 258 15 0 chr4 105513564 105513630 -78775032 + (TA)n Simple_repeat Simple_repeat 1 67 0 880 231 42 79 chr4 105513634 105513673 -78774989 - L1MC4 LINE L1 -112 7930 7891 2001 139 3 14 chr4 105513673 105513968 -78774694 - AluSx SINE Alu -20 292 1 880 231 42 79 chr4 105513968 105514331 -78774331 - L1MC4 LINE L1 -151 7891 7543 333 136 0 0 chr4 105514754 105514820 -78773842 + (TC)n Simple_repeat Simple_repeat 2 67 0 254 328 84 15 chr4 105515273 105515404 -78773258 + MIR3 SINE MIR 6 145 -63 2281 114 0 3 chr4 105515603 105515911 -78772751 + AluSx SINE Alu 1 307 -5 22 35 0 0 chr4 105515998 105516027 -78772635 + AT_rich Low_complexity Low_complexity 1 29 0 690 164 0 8 chr4 105516086 105516208 -78772454 + L1MC1 LINE L1 6152 6272 -61 1256 291 33 19 chr4 105516398 105516817 -78771845 + LTR16A LTR ERVL 26 450 0 529 289 75 10 chr4 105516826 105517027 -78771635 + HERV16 LTR ERVL 11 224 -4772 3405 271 109 32 chr4 105517030 105517177 -78771485 + HERV16 LTR ERVL 1377 1511 -3485 6440 92 14 3 chr4 105517177 105518038 -78770624 + L1MA2 LINE L1 5435 6304 0 3405 271 109 32 chr4 105518038 105518613 -78770049 + HERV16 LTR ERVL 1511 2041 -2955 2357 151 8 3 chr4 105518613 105518977 -78769685 + MER47A DNA MER2_type 1 366 0 3405 271 109 32 chr4 105518977 105519524 -78769138 + HERV16 LTR ERVL 2041 2744 -2252 1433 317 47 22 chr4 105519555 105520104 -78768558 + HERV16 LTR ERVL 2846 3408 -2356 224 163 20 20 chr4 105520240 105520289 -78768373 + CT-rich Low_complexity Low_complexity 2 50 0 429 311 89 22 chr4 105520560 105520965 -78767697 - L1M4 LINE L1 -1538 4608 4177 512 160 19 38 chr4 105520970 105521076 -78767586 - MLT1F1 LTR MaLR 0 567 464 698 219 39 0 chr4 105521079 105521234 -78767428 - MLT1F1 LTR MaLR -406 161 1 477 279 105 34 chr4 105521250 105521779 -78766883 - L1M4 LINE L1 -1979 4167 3599 222 360 33 0 chr4 105522721 105522825 -78765837 + MIR3 SINE MIR 75 183 -25 213 163 23 0 chr4 105523372 105523415 -78765247 + A-rich Low_complexity Low_complexity 4 47 0 2173 134 0 0 chr4 105523642 105523940 -78764722 + AluSx SINE Alu 1 298 -14 240 258 22 84 chr4 105523989 105524167 -78764495 - L1M4 LINE L1 -1493 4653 4487 2322 93 0 3 chr4 105524309 105524611 -78764051 - AluY SINE Alu -10 301 1 22 0 0 0 chr4 105524795 105524817 -78763845 + AT_rich Low_complexity Low_complexity 1 22 0 1378 166 7 35 chr4 105524825 105524891 -78763771 - L1MD3 LINE L1 -1 7994 7928 1958 164 3 0 chr4 105524891 105525184 -78763478 + AluJo SINE Alu 1 294 -18 1378 166 7 35 chr4 105525184 105525401 -78763261 - L1MD3 LINE L1 -67 7928 7719 544 238 65 36 chr4 105525771 105525939 -78762723 + MIR SINE MIR 13 185 -77 444 107 13 27 chr4 105527266 105527341 -78761321 - Alu SINE Alu -243 75 2 2115 104 10 13 chr4 105527375 105527673 -78760989 + AluSg SINE Alu 1 297 -13 203 234 85 0 chr4 105528920 105528967 -78759695 - L2 LINE L2 0 3272 3222 551 327 54 0 chr4 105529411 105529634 -78759028 + MIR SINE MIR 28 262 0 363 274 120 37 chr4 105529665 105529990 -78758672 + L2 LINE L2 1178 1529 -1785 268 374 32 19 chr4 105530181 105530336 -78758326 - L2 LINE L2 -208 3064 2908 531 202 130 0 chr4 105531133 105531233 -78757429 - FLAM_C SINE Alu -30 113 2 12561 203 16 16 chr4 105531316 105534528 -78754134 + L1PA15 LINE L1 2282 5484 -681 665 190 22 7 chr4 105534531 105534668 -78753994 + BC200 scRNA scRNA 5 143 -57 4245 123 11 20 chr4 105534668 105535230 -78753432 + L1PA15 LINE L1 5476 6032 -133 2028 123 7 29 chr4 105535230 105535538 -78753124 + AluSx SINE Alu 1 301 -11 4245 123 11 20 chr4 105535538 105535668 -78752994 + L1PA15 LINE L1 6032 6162 -3 347 330 26 64 chr4 105535689 105536034 -78752628 - L1ME LINE L1 -517 5604 5273 1915 134 32 0 chr4 105536479 105536756 -78751906 + AluJb SINE Alu 8 293 -19 21 0 0 0 chr4 105536811 105536832 -78751830 + AT_rich Low_complexity Low_complexity 1 21 0 360 312 188 43 chr4 105537093 105537375 -78751287 - HAL1b LINE L1 -675 673 351 654 174 108 20 chr4 105537418 105537481 -78751181 + L1MA9 LINE L1 5167 5223 -923 266 73 24 0 chr4 105537481 105537522 -78751140 + (TA)n Simple_repeat Simple_repeat 2 43 0 654 174 108 20 chr4 105537522 105537653 -78751009 + L1MA9 LINE L1 5223 5378 -768 722 89 0 0 chr4 105537655 105537756 -78750906 - MSTA LTR MaLR -1 427 327 1396 205 109 36 chr4 105537768 105537804 -78750858 + L1MA9 LINE L1 5746 5778 -534 198 0 0 0 chr4 105537804 105537826 -78750836 + (TA)n Simple_repeat Simple_repeat 1 22 0 1396 205 109 36 chr4 105537826 105537863 -78750799 + L1MA9 LINE L1 5778 5811 -501 1652 131 208 38 chr4 105537863 105538229 -78750433 + MSTA LTR MaLR 1 428 0 1396 205 109 36 chr4 105538229 105538651 -78750011 + L1MA9 LINE L1 5811 6278 -34 520 273 73 39 chr4 105538945 105539150 -78749512 - MIR SINE MIR -31 231 20 1884 140 29 29 chr4 105539280 105539622 -78749040 - MER2 DNA MER2_type -2 342 1 747 282 123 0 chr4 105540299 105540519 -78748143 - MIR SINE MIR 0 262 16 22 0 0 0 chr4 105540898 105540920 -78747742 + AT_rich Low_complexity Low_complexity 1 22 0 250 274 35 53 chr4 105541961 105542074 -78746588 + L2 LINE L2 3158 3268 -4 1624 117 26 0 chr4 105542441 105542705 -78745957 - L1PA15 LINE L1 -145 6020 5750 272 167 31 135 chr4 105543162 105543226 -78745436 + MLT2C1 LTR ERVL 1 53 -344 707 202 8 23 chr4 105543226 105543355 -78745307 + FLAM_A SINE Alu 1 127 -6 272 167 31 135 chr4 105543355 105543386 -78745276 + MLT2C1 LTR ERVL 53 86 -311 272 112 80 152 chr4 105543384 105543509 -78745153 + MLT2C1 LTR ERVL 161 276 -121 253 227 67 27 chr4 105544237 105544312 -78744350 + L1ME4a LINE L1 5723 5800 -2008 772 260 98 8 chr4 105544317 105544552 -78744110 - MIR SINE MIR -3 259 4 304 227 27 0 chr4 105544663 105544738 -78743924 + L1ME4a LINE L1 6045 6121 0 354 374 30 40 chr4 105545193 105545391 -78743271 - MIR3 SINE MIR -9 199 4 1448 230 73 15 chr4 105545634 105546042 -78742620 - MER63B DNA MER1_type -1 435 4 2295 105 0 7 chr4 105546053 105546349 -78742313 - AluSg SINE Alu -16 294 1 2021 123 48 6 chr4 105546512 105546846 -78741816 + MER7A DNA MER2_type 1 346 0 2153 106 0 0 chr4 105547689 105548007 -78740655 - AluSq SINE Alu 0 319 2 2809 139 15 2 chr4 105548160 105548829 -78739833 + L1PA14 LINE L1 4812 5489 -672 1422 142 5 0 chr4 105548832 105549043 -78739619 + AluSx SINE Alu 1 212 -100 411 88 0 0 chr4 105549043 105549100 -78739562 + AluSg/x SINE Alu 76 132 -178 4469 82 48 0 chr4 105549102 105549752 -78738910 + L1PA14 LINE L1 5477 6157 -4 2409 78 7 0 chr4 105549752 105550058 -78738604 + AluY SINE Alu 1 308 -3 709 245 82 5 chr4 105550596 105550780 -78737882 - MIR SINE MIR -4 258 61 260 298 132 25 chr4 105550842 105550963 -78737699 + L2 LINE L2 3139 3272 0 484 207 16 0 chr4 105551382 105551503 -78737159 + (TA)n Simple_repeat Simple_repeat 2 124 0 252 284 92 28 chr4 105551709 105551818 -78736844 - MIR SINE MIR -101 161 46 381 279 90 8 chr4 105553297 105553419 -78735243 - MIR3 SINE MIR -27 181 50 21 57 0 0 chr4 105554795 105554830 -78733832 + AT_rich Low_complexity Low_complexity 1 35 0 403 239 83 0 chr4 105555155 105555264 -78733398 + MIR SINE MIR 128 245 -17 1820 130 56 11 chr4 105555308 105555592 -78733070 + AluSx SINE Alu 16 312 0 3143 189 16 38 chr4 105555944 105556611 -78732051 + MER82 DNA MER2_type 1 653 0 1893 123 38 14 chr4 105557492 105557784 -78730878 + AluSq SINE Alu 1 299 -14 229 234 16 31 chr4 105558231 105558295 -78730367 + MLT1L LTR MaLR 3 65 -550 2034 158 0 0 chr4 105558306 105558604 -78730058 - AluSx SINE Alu -14 298 1 446 308 82 5 chr4 105559039 105559234 -78729428 + LTR16A1 LTR ERVL 248 457 0 461 228 20 32 chr4 105559302 105559463 -78729199 + MLT1L LTR MaLR 257 478 -110 2021 182 7 113 chr4 105559562 105559773 -78728889 + MLT1D LTR MaLR 1 233 -272 1794 170 3 10 chr4 105559773 105560067 -78728595 + AluJo SINE Alu 1 292 -20 2021 182 7 113 chr4 105560067 105560420 -78728242 + MLT1D LTR MaLR 233 505 0 185 256 0 0 chr4 105560804 105560843 -78727819 + L2 LINE L2 2979 3017 -296 366 314 216 15 chr4 105561025 105561363 -78727299 - L2 LINE L2 -337 2977 2572 1129 260 20 10 chr4 105561646 105561946 -78726716 + L2 LINE L2 2430 2732 -582 283 239 0 0 chr4 105561952 105562019 -78726643 + MLT1H LTR MaLR 13 79 -470 235 301 27 0 chr4 105562167 105562240 -78726422 - LTR67 LTR ERVL -358 199 125 631 186 190 30 chr4 105562802 105563039 -78725623 - ORSL DNA AcHobo 0 275 1 932 168 0 89 chr4 105563104 105563247 -78725415 - AluJb SINE Alu -49 263 140 2294 50 47 3 chr4 105563247 105563545 -78725117 - AluY SINE Alu 0 311 1 932 168 0 89 chr4 105563545 105563592 -78725070 - AluJb SINE Alu -172 140 90 392 313 80 35 chr4 105563813 105564101 -78724561 + L2 LINE L2 2609 2909 -405 364 277 52 66 chr4 105564243 105564456 -78724206 + L2 LINE L2 3104 3313 0 382 204 45 0 chr4 105564581 105564669 -78723993 + MIR SINE MIR 105 196 -66 1741 173 3 3 chr4 105564672 105564991 -78723671 + AluJo SINE Alu 1 319 0 1854 187 3 0 chr4 105565012 105565317 -78723345 + AluJo SINE Alu 1 306 -6 30 27 0 0 chr4 105565803 105565840 -78722822 + AT_rich Low_complexity Low_complexity 1 37 0 426 296 12 17 chr4 105568201 105568373 -78720289 + L1MC4a LINE L1 5196 5366 -780 707 128 68 8 chr4 105568373 105568490 -78720172 + FRAM SINE Alu 35 158 -18 966 269 70 78 chr4 105568492 105568788 -78719874 + L1MC4a LINE L1 5356 5680 -2128 242 114 0 0 chr4 105568788 105568823 -78719839 - Alu SINE Alu -59 242 208 966 269 70 78 chr4 105568823 105569065 -78719597 + L1MC4a LINE L1 5680 5923 -1885 198 247 39 26 chr4 105571039 105571116 -78717546 + L2 LINE L2 3144 3221 -92 824 104 0 0 chr4 105571306 105571421 -78717241 + AluSp/q SINE Alu 199 313 0 2162 136 31 19 chr4 105572148 105572508 -78716154 - THE1B LTR MaLR 0 364 1 239 348 50 18 chr4 105572875 105573096 -78715566 - L2 LINE L2 -1453 1861 1634 408 316 218 0 chr4 105574537 105574743 -78713919 - MIR SINE MIR -4 258 8 282 258 0 0 chr4 105575129 105575191 -78713471 + (TG)n Simple_repeat Simple_repeat 1 62 0 1949 146 0 14 chr4 105575321 105575615 -78713047 + AluJb SINE Alu 1 290 -22 391 277 143 39 chr4 105576248 105576439 -78712223 + MIR SINE MIR 43 248 -14 1513 235 6 0 chr4 105576799 105577148 -78711514 + L1ME3 LINE L1 5561 5911 -259 926 277 49 56 chr4 105577148 105577657 -78711005 + MLT1H LTR MaLR 1 547 -2 843 215 101 4 chr4 105577659 105577887 -78710775 + L1ME3 LINE L1 5907 6156 -6 201 39 0 0 chr4 105577888 105577914 -78710748 + (CA)n Simple_repeat Simple_repeat 2 27 0 800 205 0 6 chr4 105578228 105578389 -78710273 + FRAM SINE Alu 2 161 -15 483 238 149 11 chr4 105578784 105578965 -78709697 + MLT1K LTR MaLR 376 581 -7 456 19 0 0 chr4 105579669 105579722 -78708940 + (TA)n Simple_repeat Simple_repeat 1 53 0 193 341 32 32 chr4 105579760 105579886 -78708776 + L2 LINE L2 3106 3231 -41 3433 239 70 16 chr4 105580903 105582003 -78706659 + L1MEc LINE L1 40 1199 -5197 1398 242 84 13 chr4 105582059 105582509 -78706153 + L1ME1 LINE L1 5680 6161 -5 242 164 18 0 chr4 105582552 105582607 -78706055 + GA-rich Low_complexity Low_complexity 4 59 0 5767 44 3 1 chr4 105582992 105583693 -78704969 + L1PA5 LINE L1 5452 6153 -1 21 0 0 0 chr4 105584534 105584555 -78704107 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 105584582 105584607 -78704055 + AT_rich Low_complexity Low_complexity 1 25 0 192 143 43 0 chr4 105584678 105584748 -78703914 + (TA)n Simple_repeat Simple_repeat 2 74 0 297 0 0 0 chr4 105584756 105584789 -78703873 + (TC)n Simple_repeat Simple_repeat 2 34 0 261 0 0 0 chr4 105584788 105584817 -78703845 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 1889 154 4 0 chr4 105584833 105585112 -78703550 - AluJb SINE Alu -30 282 3 384 376 86 21 chr4 105585659 105586218 -78702444 + L2 LINE L2 2224 2818 -496 1157 270 112 34 chr4 105587569 105588095 -78700567 - MLT1K LTR MaLR -12 576 10 251 224 52 0 chr4 105588332 105588390 -78700272 - MIR SINE MIR -18 244 184 22 70 0 0 chr4 105588513 105588556 -78700106 + AT_rich Low_complexity Low_complexity 1 43 0 3708 206 46 16 chr4 105589463 105590363 -78698299 - MER63C DNA MER1_type -3 927 1 349 319 89 25 chr4 105591204 105591361 -78697301 + MIR3 SINE MIR 31 197 -11 29 28 0 0 chr4 105591865 105591901 -78696761 + AT_rich Low_complexity Low_complexity 1 36 0 189 107 0 0 chr4 105592831 105592859 -78695803 + (CCAA)n Simple_repeat Simple_repeat 1 28 0 577 307 110 18 chr4 105594615 105594843 -78693819 - MIR SINE MIR 0 262 14 186 266 125 0 chr4 105595126 105595190 -78693472 - MIR SINE MIR -132 130 59 724 292 143 5 chr4 105595696 105596141 -78692521 - L2 LINE L2 -49 3264 2762 559 196 9 9 chr4 105596143 105596250 -78692412 + Tigger3(Golem) DNA MER2_type 2 108 -2921 * 4286 107 42 14 chr4 105596241 105596499 -78692163 + Tigger3(Golem) DNA MER2_type 2278 2527 -502 2109 119 0 44 chr4 105596499 105596818 -78691844 - AluSx SINE Alu -7 305 1 4286 107 42 14 chr4 105596818 105597289 -78691373 + Tigger3(Golem) DNA MER2_type 2527 3028 -1 405 298 161 18 chr4 105597294 105597462 -78691200 - L2 LINE L2 -557 2757 2566 410 230 75 63 chr4 105597482 105597656 -78691006 - L2 LINE L2 -904 2410 2235 318 326 0 45 chr4 105598154 105598286 -78690376 - L2 LINE L2 -177 3095 2970 3913 38 0 0 chr4 105598451 105598923 -78689739 + L1PA3 LINE L1 5684 6155 0 9110 29 1 0 chr4 105598989 105600126 -78688536 - L1PA3 LINE L1 -1000 5146 4009 7570 32 0 1 chr4 105600126 105601139 -78687523 + L1PA3 LINE L1 5141 6152 -3 38 0 0 0 chr4 105601139 105601177 -78687485 + AT_rich Low_complexity Low_complexity 1 38 0 347 261 144 26 chr4 105602005 105602158 -78686504 + MIR SINE MIR 89 259 -3 27 87 0 0 chr4 105602592 105602661 -78686001 + AT_rich Low_complexity Low_complexity 1 69 0 1770 176 72 19 chr4 105602712 105603086 -78685576 + MSTD LTR MaLR 1 394 -2 423 254 17 8 chr4 105603090 105603208 -78685454 - MER94 DNA DNA 0 134 16 560 252 167 64 chr4 105604223 105604457 -78684205 - MIR SINE MIR -3 259 2 331 296 0 19 chr4 105604595 105604703 -78683959 - L3b LINE CR1 -345 1238 1133 263 244 11 33 chr4 105606766 105606856 -78681806 + CT-rich Low_complexity Low_complexity 1 88 0 342 303 23 8 chr4 105606890 105607022 -78681640 - L1M4 LINE L1 -906 5240 5107 194 222 63 48 chr4 105607367 105607430 -78681232 + MIR SINE MIR 199 262 0 252 0 0 0 chr4 105608194 105608222 -78680440 + (TC)n Simple_repeat Simple_repeat 2 29 0 237 65 0 0 chr4 105608221 105608252 -78680410 + (TA)n Simple_repeat Simple_repeat 2 32 0 * 2002 123 0 0 chr4 105608252 105608555 -78680107 - AluSx SINE Alu 0 311 9 211 264 42 14 chr4 105608565 105608637 -78680025 - L3b LINE CR1 -257 1326 1253 738 209 80 45 chr4 105608659 105608860 -78679802 - MER63A DNA MER1_type -1 209 2 243 304 89 68 chr4 105609113 105609304 -78679358 + MLT1K LTR MaLR 4 198 -390 729 257 107 16 chr4 105609449 105609702 -78678960 + MLT1K LTR MaLR 313 588 0 630 332 115 52 chr4 105609704 105609910 -78678752 - L3 LINE CR1 -75 1502 1310 1485 128 5 0 chr4 105609910 105610121 -78678541 - AluJo SINE Alu -18 294 83 630 332 115 52 chr4 105610121 105610375 -78678287 - L3 LINE CR1 -267 1310 1013 560 91 0 0 chr4 105612852 105612929 -78675733 - MADE1 DNA Mariner 0 80 4 180 97 0 0 chr4 105613089 105613120 -78675542 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 810 179 6 6 chr4 105613120 105613276 -78675386 - L1MB1 LINE L1 -8 6160 6005 242 146 0 0 chr4 105613397 105613438 -78675224 - MSTA LTR MaLR 0 428 388 717 201 76 0 chr4 105613443 105613587 -78675075 + FAM SINE Alu 3 157 -18 1667 134 134 38 chr4 105613604 105613970 -78674692 - MSTA LTR MaLR -27 401 1 306 89 0 0 chr4 105614281 105614326 -78674336 + L1MB7 LINE L1 6130 6174 -10 469 164 0 17 chr4 105614333 105614361 -78674301 + (TA)n Simple_repeat Simple_repeat 2 29 -86 849 206 272 13 chr4 105614361 105614589 -78674073 + AluJo SINE Alu 1 287 -15 469 164 0 17 chr4 105614589 105614676 -78673986 + (TA)n Simple_repeat Simple_repeat 29 115 0 1488 211 103 33 chr4 105615185 105615668 -78672994 + L1MC5 LINE L1 6998 7514 -447 * 4446 152 22 63 chr4 105615647 105616752 -78671910 + L1MA9 LINE L1 5203 6262 -50 22 35 0 0 chr4 105616939 105616968 -78671694 + AT_rich Low_complexity Low_complexity 1 29 0 270 204 88 71 chr4 105617034 105617147 -78671515 + L1ME3A LINE L1 5968 6082 -88 4308 105 31 3 chr4 105617158 105617775 -78670887 - MER51A LTR ERV1 0 634 1 554 153 10 0 chr4 105618830 105618928 -78669734 - L1PB4 LINE L1 -4 6152 6054 200 210 100 150 chr4 105619037 105619113 -78669549 + MER5A DNA MER1_type 95 166 -23 2019 157 3 0 chr4 105619113 105619406 -78669256 + AluJo SINE Alu 3 296 -16 200 210 100 150 chr4 105619406 105619429 -78669233 + MER5A DNA MER1_type 166 189 0 370 331 50 0 chr4 105619507 105619668 -78668994 + MIR SINE MIR 15 181 -63 400 349 24 12 chr4 105621674 105621840 -78666822 - MER5A DNA MER1_type -20 169 2 1985 120 0 7 chr4 105622364 105622663 -78665999 - AluSc SINE Alu -10 299 3 224 239 65 54 chr4 105623114 105623206 -78665456 + MER5A DNA MER1_type 95 187 -2 * 494 222 0 0 chr4 105623129 105623219 -78665443 - MER5A DNA MER1_type -96 93 4 353 356 54 10 chr4 105624143 105624348 -78664314 + L3b LINE CR1 1102 1315 -268 356 213 12 12 chr4 105624945 105625025 -78663637 - MLT1C LTR MaLR -52 415 336 1006 176 0 0 chr4 105625195 105625348 -78663314 + FRAM SINE Alu 1 152 -24 21 71 0 0 chr4 105625348 105625390 -78663272 + AT_rich Low_complexity Low_complexity 1 42 0 279 288 0 0 chr4 105626808 105626888 -78661774 - MER117 DNA MER1_type -72 125 46 259 303 45 22 chr4 105627126 105627215 -78661447 + L2 LINE L2 3182 3272 0 1838 171 0 28 chr4 105627228 105627549 -78661113 + AluJb SINE Alu 1 312 0 768 189 176 0 chr4 105627933 105628086 -78660576 - MER5A DNA MER1_type 0 189 10 285 248 292 7 chr4 105628193 105628330 -78660332 - MIR SINE MIR -58 204 29 288 206 28 156 chr4 105628562 105628742 -78659920 + L1MC/D LINE L1 5717 5873 -1935 2214 93 104 17 chr4 105628975 105629320 -78659342 + THE1C LTR MaLR 1 375 0 272 30 0 0 chr4 105629610 105629643 -78659019 + U2 snRNA snRNA 2 34 -154 849 238 67 9 chr4 105629678 105629908 -78658754 - MIR SINE MIR -11 251 11 344 244 13 0 chr4 105630242 105630320 -78658342 - L2 LINE L2 0 3313 3235 364 270 34 42 chr4 105630501 105630789 -78657873 - L1ME LINE L1 -573 5548 5263 35 0 0 0 chr4 105630910 105630945 -78657717 + AT_rich Low_complexity Low_complexity 1 35 0 186 43 0 0 chr4 105630950 105630973 -78657689 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1568 169 8 11 chr4 105630977 105631243 -78657419 - AluJb SINE Alu -4 308 44 580 152 0 0 chr4 105631244 105631336 -78657326 - AluJ/FLAM SINE Alu -220 92 1 24 32 0 0 chr4 105631338 105631369 -78657293 + AT_rich Low_complexity Low_complexity 1 31 0 6203 127 9 9 chr4 105631370 105632727 -78655935 - L1PB1 LINE L1 -6 6145 4792 1020 137 0 0 chr4 105632727 105632895 -78655767 + L1PB1 LINE L1 4621 4788 -1358 2148 135 7 0 chr4 105633066 105633370 -78655292 + AluSx SINE Alu 1 306 -6 629 353 84 20 chr4 105633387 105633985 -78654677 - L1ME LINE L1 -1327 4819 4184 1804 111 32 0 chr4 105634740 105635018 -78653644 + AluSx SINE Alu 21 306 0 564 278 137 9 chr4 105635036 105635248 -78653414 + MIR SINE MIR 6 244 -18 2253 121 0 0 chr4 105635323 105635620 -78653042 + AluSx SINE Alu 1 297 -15 209 231 177 85 chr4 105635930 105636060 -78652602 - MIR3 SINE MIR -61 147 6 388 303 23 46 chr4 105636091 105636266 -78652396 + MIR SINE MIR 13 183 -79 825 199 70 0 chr4 105636594 105636765 -78651897 - MER5A DNA MER1_type -6 183 1 316 256 146 0 chr4 105637810 105637892 -78650770 + MER117 DNA MER1_type 49 142 -55 394 235 45 25 chr4 105638493 105638627 -78650035 - MIR3 SINE MIR -51 157 25 353 318 91 7 chr4 105638623 105638777 -78649885 + MIR SINE MIR 82 248 -14 * 193 320 0 0 chr4 105638795 105638845 -78649817 + MIR SINE MIR 213 262 0 2315 110 3 0 chr4 105639179 105639489 -78649173 - AluSq SINE Alu -2 311 1 1496 206 85 46 chr4 105639803 105639946 -78648716 - Charlie4a DNA MER1_type -1458 503 367 1958 138 28 42 chr4 105639946 105640028 -78648634 + L1MC1 LINE L1 5984 6066 -267 4542 114 17 63 chr4 105640028 105640753 -78647909 - LTR8 LTR ERV1 0 691 1 1958 138 28 42 chr4 105640753 105641025 -78647637 + L1MC1 LINE L1 6066 6333 0 1496 206 85 46 chr4 105641025 105641342 -78647320 - Charlie4a DNA MER1_type -1594 367 25 2124 106 48 0 chr4 105641674 105641967 -78646695 - AluSx SINE Alu -5 307 1 236 204 111 111 chr4 105642311 105642356 -78646306 - MER117 DNA MER1_type -82 115 71 2784 193 82 86 chr4 105642356 105643185 -78645477 + LTR1B LTR ERV1 1 826 0 236 204 111 111 chr4 105643185 105643247 -78645415 - MER117 DNA MER1_type -125 72 8 265 250 180 10 chr4 105643683 105643783 -78644879 + L2 LINE L2 3197 3313 0 195 265 85 146 chr4 105643912 105644172 -78644490 + L2 LINE L2 2836 3079 -193 235 273 0 30 chr4 105644187 105644253 -78644409 + L2 LINE L2 3250 3313 0 203 0 37 0 chr4 105644453 105644480 -78644182 + (GGAA)n Simple_repeat Simple_repeat 4 31 0 997 70 14 0 chr4 105644499 105644642 -78644020 + (GGAA)n Simple_repeat Simple_repeat 2 146 0 669 123 0 0 chr4 105644666 105644772 -78643890 + (GGAA)n Simple_repeat Simple_repeat 2 107 0 701 176 82 53 chr4 105645987 105646157 -78642505 - MER96 DNA MER1_type 0 175 1 616 197 17 8 chr4 105646473 105646590 -78642072 + MER45A DNA AcHobo 51 168 -10 954 288 56 60 chr4 105646684 105647181 -78641481 + L2 LINE L2 2767 3259 -13 436 229 58 0 chr4 105648700 105648815 -78639847 + MIR SINE MIR 54 176 -65 622 231 67 67 chr4 105648836 105649061 -78639601 - L2 LINE L2 -4 3309 3085 279 122 0 0 chr4 105649067 105649108 -78639554 - LTR16A LTR ERVL -3 447 407 963 279 78 8 chr4 105649151 105649395 -78639267 - LTR16A LTR ERVL -157 293 33 857 303 21 15 chr4 105649510 105649807 -78638855 - L2 LINE L2 -234 3079 2782 250 307 13 0 chr4 105649795 105649870 -78638792 + MIR SINE MIR 159 234 -28 * 378 0 0 0 chr4 105649886 105649928 -78638734 + (CAT)n Simple_repeat Simple_repeat 2 43 0 24 67 0 0 chr4 105650032 105650077 -78638585 + AT_rich Low_complexity Low_complexity 1 45 0 390 167 14 0 chr4 105650313 105650385 -78638277 + MER116 DNA Mariner 5 77 -3 261 239 169 54 chr4 105650881 105651011 -78637651 - L1MC4 LINE L1 0 8042 7898 242 258 15 0 chr4 105651011 105651077 -78637585 + (TA)n Simple_repeat Simple_repeat 2 68 0 880 231 42 79 chr4 105651081 105651120 -78637542 - L1MC4 LINE L1 -112 7930 7891 2013 141 3 13 chr4 105651120 105651418 -78637244 - AluSx SINE Alu -17 295 1 880 231 42 79 chr4 105651418 105651781 -78636881 - L1MC4 LINE L1 -151 7891 7543 333 136 0 0 chr4 105652204 105652270 -78636392 + (TC)n Simple_repeat Simple_repeat 2 67 0 254 328 84 15 chr4 105652729 105652860 -78635802 + MIR3 SINE MIR 6 145 -63 2289 113 0 3 chr4 105653059 105653368 -78635294 + AluSx SINE Alu 1 308 -4 22 35 0 0 chr4 105653455 105653484 -78635178 + AT_rich Low_complexity Low_complexity 1 29 0 690 164 0 8 chr4 105653543 105653665 -78634997 + L1MC1 LINE L1 6152 6272 -61 1251 289 33 19 chr4 105653855 105654274 -78634388 + LTR16A LTR ERVL 26 450 0 529 289 75 10 chr4 105654283 105654484 -78634178 + HERV16 LTR ERVL 11 224 -4772 3427 272 109 31 chr4 105654487 105654634 -78634028 + HERV16 LTR ERVL 1377 1511 -3485 6438 93 13 3 chr4 105654634 105655496 -78633166 + L1MA2 LINE L1 5435 6304 0 3427 272 109 31 chr4 105655496 105656071 -78632591 + HERV16 LTR ERVL 1511 2040 -2956 2357 151 8 3 chr4 105656071 105656435 -78632227 + MER47A DNA MER2_type 1 366 0 3427 272 109 31 chr4 105656435 105656981 -78631681 + HERV16 LTR ERVL 2040 2744 -2252 2049 305 80 37 chr4 105657012 105658243 -78630419 + HERV16 LTR ERVL 2846 3803 -1193 850 341 137 21 chr4 105658496 105659146 -78629516 + HERV16 LTR ERVL 4213 4937 -827 669 297 47 40 chr4 105659173 105659449 -78629213 + L2 LINE L2 3036 3313 0 364 258 154 36 chr4 105659457 105659678 -78628984 - L1ME4a LINE L1 -295 5826 5580 402 286 208 6 chr4 105660474 105660652 -78628010 + MIR SINE MIR 49 262 0 467 315 52 75 chr4 105661134 105661442 -78627220 - L2 LINE L2 0 3272 2972 4271 118 5 30 chr4 105661523 105662159 -78626503 + L1PA16 LINE L1 5544 6163 -3 224 163 20 20 chr4 105662669 105662718 -78625944 + CT-rich Low_complexity Low_complexity 2 50 0 305 291 112 45 chr4 105662989 105663391 -78625271 - L1ME4a LINE L1 -1538 4608 4180 512 160 19 38 chr4 105663399 105663505 -78625157 - MLT1F1 LTR MaLR 0 567 464 698 219 39 0 chr4 105663508 105663663 -78624999 - MLT1F1 LTR MaLR -406 161 1 323 297 67 50 chr4 105663669 105663969 -78624693 - L1ME4a LINE L1 -1967 4179 3875 458 254 91 26 chr4 105663976 105664208 -78624454 - L1ME4a LINE L1 -2301 3845 3599 222 360 33 0 chr4 105665149 105665253 -78623409 + MIR3 SINE MIR 75 183 -25 231 36 0 0 chr4 105665749 105665777 -78622885 + (T)n Simple_repeat Simple_repeat 1 28 0 387 317 76 14 chr4 105668305 105668450 -78620212 + MIR SINE MIR 33 186 -76 257 247 34 22 chr4 105669170 105669259 -78619403 - L1P2 LINE L1 -387 5767 5678 190 276 52 0 chr4 105670688 105670746 -78617916 - MIR SINE MIR -196 66 6 291 272 37 0 chr4 105670781 105670862 -78617800 - MIR SINE MIR -33 229 146 277 284 223 34 chr4 105670862 105671158 -78617504 - MLT1J1 LTR MaLR -31 415 64 399 308 41 7 chr4 105671310 105671456 -78617206 - MIR SINE MIR -110 152 2 511 239 90 18 chr4 105672185 105672352 -78616310 + MIR SINE MIR 83 261 -1 285 235 204 10 chr4 105672702 105672800 -78615862 + L2 LINE L2 3153 3269 -3 328 194 97 0 chr4 105673595 105673667 -78614995 + MIR SINE MIR 76 154 -108 25 90 0 0 chr4 105673676 105673743 -78614919 + AT_rich Low_complexity Low_complexity 1 67 0 197 364 136 17 chr4 105674221 105674252 -78614410 + L2 LINE L2 1043 1069 -2245 2023 119 16 29 chr4 105674252 105674563 -78614099 - AluSx SINE Alu -5 307 1 197 364 136 17 chr4 105674563 105674707 -78613955 + L2 LINE L2 1069 1239 -2075 2247 119 0 3 chr4 105675935 105676247 -78612415 - AluSx SINE Alu -1 311 1 1658 222 0 0 chr4 105677588 105677890 -78610772 + AluJo SINE Alu 1 302 -10 417 45 318 0 chr4 105677895 105677961 -78610701 + L1MB3 LINE L1 6056 6142 -41 183 80 0 0 chr4 105677962 105677987 -78610675 + (TG)n Simple_repeat Simple_repeat 2 26 0 206 283 124 41 chr4 105678968 105679113 -78609549 - MIR SINE MIR -29 233 77 2306 117 0 0 chr4 105679543 105679850 -78608812 + AluSc SINE Alu 3 309 0 185 162 0 0 chr4 105680218 105680255 -78608407 - L2 LINE L2 -5 3308 3272 2724 130 34 5 chr4 105681171 105681580 -78607082 - L1PA15 LINE L1 0 6165 5745 362 296 10 0 chr4 105683615 105683713 -78604949 - MIR SINE MIR -7 255 157 342 279 61 46 chr4 105686777 105686939 -78601723 + MIR SINE MIR 46 215 -47 326 211 32 21 chr4 105687081 105687176 -78601486 - MLT1J1 LTR MaLR -1 445 350 2257 119 0 3 chr4 105688725 105689028 -78599634 - AluSx SINE Alu -10 302 1 23 78 0 0 chr4 105689724 105689775 -78598887 + AT_rich Low_complexity Low_complexity 1 51 0 1996 176 0 0 chr4 105690414 105690721 -78597941 - AluJb SINE Alu -3 309 3 439 236 134 51 chr4 105690772 105691064 -78597598 - L1ME4a LINE L1 -36 6085 5770 197 307 27 0 chr4 105691312 105691387 -78597275 - MIR SINE MIR -2 260 184 22 0 0 0 chr4 105691486 105691508 -78597154 + AT_rich Low_complexity Low_complexity 1 22 0 194 175 75 0 chr4 105691583 105691623 -78597039 - MIR SINE MIR -102 160 118 401 301 121 18 chr4 105694516 105694740 -78593922 + MIR SINE MIR 2 251 -11 401 306 291 12 chr4 105695214 105695551 -78593111 + L3 LINE CR1 836 1266 -311 343 331 7 27 chr4 105695555 105695703 -78592959 - LTR67 LTR ERVL 0 557 413 2157 127 0 6 chr4 105696185 105696499 -78592163 - AluSx SINE Alu 0 312 1 183 333 14 0 chr4 105696541 105696610 -78592052 + L3 LINE CR1 1412 1481 -96 186 103 0 0 chr4 105697349 105697378 -78591284 + (GA)n Simple_repeat Simple_repeat 1 29 0 234 305 0 0 chr4 105697401 105697460 -78591202 + GA-rich Low_complexity Low_complexity 105 163 0 698 259 118 5 chr4 105698367 105698587 -78590075 - MIR SINE MIR 0 262 18 447 247 0 0 chr4 105698690 105698775 -78589887 - MIR3 SINE MIR -46 162 78 323 146 44 219 chr4 105699068 105699205 -78589457 - L2 LINE L2 0 3313 3201 1775 143 65 7 chr4 105699691 105699984 -78588678 - AluJb SINE Alu -2 310 1 570 287 143 60 chr4 105700130 105700576 -78588086 - MLT1K LTR MaLR 0 588 106 195 222 0 0 chr4 105700643 105700679 -78587983 - L2 LINE L2 -47 3266 3231 2063 111 7 0 chr4 105700724 105701026 -78587636 + AluSc SINE Alu 1 304 0 1248 175 135 22 chr4 105704635 105704909 -78583753 + AluJo SINE Alu 1 305 -7 262 211 53 26 chr4 105706442 105706518 -78582144 - MIR SINE MIR -96 166 89 551 265 73 45 chr4 105706569 105706814 -78581848 + MIR SINE MIR 11 262 0 202 253 38 51 chr4 105706830 105706909 -78581753 - MIR SINE MIR -104 158 81 837 146 0 35 chr4 105708106 105708250 -78580412 - L1PA16 LINE L1 0 6166 6028 256 33 0 0 chr4 105708266 105708296 -78580366 - L1PA16 LINE L1 -109 6057 6028 256 33 0 0 chr4 105708331 105708361 -78580301 - L1PA16 LINE L1 -109 6057 6028 256 33 0 0 chr4 105708400 105708430 -78580232 - L1PA16 LINE L1 -109 6057 6028 227 67 0 0 chr4 105708446 105708476 -78580186 - L1PA16 LINE L1 -109 6057 6028 775 129 143 7 chr4 105708538 105708685 -78579977 - L1PA16 LINE L1 -109 6057 5891 529 234 9 9 chr4 105708690 105708801 -78579861 + L2 LINE L2 3202 3312 -1 288 262 83 55 chr4 105708826 105708971 -78579691 + MIR SINE MIR 14 162 -100 645 285 53 23 chr4 105709988 105710251 -78578411 - MER102b DNA MER1_type -34 307 37 352 280 40 10 chr4 105710272 105710372 -78578290 - L2 LINE L2 -3 3310 3208 306 236 372 5 chr4 105711310 105711501 -78577161 + MIR SINE MIR 2 262 0 1682 201 109 17 chr4 105712601 105712960 -78575702 - MSTD LTR MaLR -4 392 1 2234 132 0 0 chr4 105713113 105713424 -78575238 + AluSx SINE Alu 1 311 -1 228 227 27 36 chr4 105713525 105713635 -78575027 + (TA)n Simple_repeat Simple_repeat 1 109 0 1228 273 108 17 chr4 105714086 105714566 -78574096 + L1MC4a LINE L1 5340 5863 -1945 25 31 0 0 chr4 105714836 105714868 -78573794 + AT_rich Low_complexity Low_complexity 1 32 0 211 338 138 19 chr4 105714940 105715100 -78573562 + L3b LINE CR1 1123 1301 -282 258 199 78 71 chr4 105716229 105716370 -78572292 - MER113 DNA MER1_type? -378 143 2 344 113 62 21 chr4 105716639 105716736 -78571926 + GA-rich Low_complexity Low_complexity 1 101 0 7009 191 184 42 chr4 105717081 105717914 -78570748 + L1MD1 LINE L1 18 731 -5809 2147 112 13 22 chr4 105717914 105718192 -78570470 + AluSx SINE Alu 1 277 -35 198 0 0 0 chr4 105718192 105718214 -78570448 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 2147 112 13 22 chr4 105718214 105718247 -78570415 + AluSx SINE Alu 277 309 -3 7009 191 184 42 chr4 105718247 105718551 -78570111 + L1MD1 LINE L1 731 990 -5550 189 0 0 0 chr4 105718551 105718572 -78570090 + (CAA)n Simple_repeat Simple_repeat 1 21 0 7009 191 184 42 chr4 105718572 105719426 -78569236 + L1MD1 LINE L1 990 2293 -4247 6639 206 58 31 chr4 105719469 105721353 -78567309 + L1MD1 LINE L1 3609 5440 -1196 2914 71 11 3 chr4 105721353 105721717 -78566945 + L1PA8 LINE L1 5805 6171 -1 6639 206 58 31 chr4 105721717 105722432 -78566230 + L1MD1 LINE L1 5440 6134 -502 2495 47 0 3 chr4 105722432 105722733 -78565929 + AluY SINE Alu 1 300 -11 185 0 0 39 chr4 105722737 105722763 -78565899 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6639 206 58 31 chr4 105722763 105723116 -78565546 + L1MD1 LINE L1 6136 6636 0 341 299 36 10 chr4 105724549 105724673 -78563989 - MIR SINE MIR -68 140 15 297 250 62 0 chr4 105725333 105725413 -78563249 - MIR SINE MIR -114 148 64 1214 297 50 12 chr4 105725533 105726048 -78562614 - L1ME4a LINE L1 -5 6116 5582 2460 217 49 46 chr4 105726307 105726898 -78561764 + MLT1E LTR MaLR 1 593 0 822 268 60 4 chr4 105727193 105727458 -78561204 + LTR33A LTR ERVL 221 500 -23 272 392 67 8 chr4 105727602 105727722 -78560940 - L2 LINE L2 -27 3245 3119 1004 180 0 0 chr4 105727838 105727999 -78560663 + AluJb SINE Alu 132 292 -20 300 212 71 115 chr4 105728364 105728477 -78560185 + MIR3 SINE MIR 15 122 -86 637 258 16 11 chr4 105728529 105728715 -78559947 - MIR SINE MIR -10 252 66 181 264 165 11 chr4 105729127 105729218 -78559444 - MIR SINE MIR -110 152 48 274 261 48 24 chr4 105729543 105729708 -78558954 + (CATA)n Simple_repeat Simple_repeat 1 169 0 425 197 45 39 chr4 105729716 105729894 -78558768 + (CA)n Simple_repeat Simple_repeat 2 180 0 231 285 28 28 chr4 105730068 105730212 -78558450 + (CA)n Simple_repeat Simple_repeat 1 144 0 361 202 46 29 chr4 105730305 105730478 -78558184 + (CA)n Simple_repeat Simple_repeat 2 177 0 348 294 72 33 chr4 105732644 105732797 -78555865 + MIR SINE MIR 58 216 -46 2166 71 21 11 chr4 105733013 105733296 -78555366 + AluY SINE Alu 22 307 -4 27 0 0 0 chr4 105733296 105733323 -78555339 + AT_rich Low_complexity Low_complexity 1 27 0 300 217 236 0 chr4 105734392 105734498 -78554164 - L1ME4a LINE L1 -4 6117 5987 1948 128 10 7 chr4 105734754 105735043 -78553619 - L1PA16 LINE L1 -1 6165 5876 22 99 0 0 chr4 105735216 105735287 -78553375 + AT_rich Low_complexity Low_complexity 1 71 0 219 36 0 0 chr4 105735370 105735398 -78553264 + (CA)n Simple_repeat Simple_repeat 1 28 0 660 245 31 41 chr4 105735849 105736045 -78552617 + MIR SINE MIR 21 214 -48 401 286 84 33 chr4 105736127 105736340 -78552322 - MARNA DNA Mariner -16 570 347 324 365 44 28 chr4 105736692 105736873 -78551789 + MIR3 SINE MIR 19 202 -6 194 216 0 0 chr4 105736910 105736947 -78551715 + MIR SINE MIR 71 107 -155 2622 169 5 25 chr4 105736947 105737378 -78551284 - MSTB LTR MaLR 0 426 5 8547 184 57 5 chr4 105737382 105738951 -78549711 - MSTB-int LTR MaLR 0 1651 1 2404 155 26 28 chr4 105738951 105739143 -78549519 - MSTB LTR MaLR 0 426 235 2184 125 71 34 chr4 105739143 105739494 -78549168 - THE1B LTR MaLR 0 364 1 2404 155 26 28 chr4 105739494 105739728 -78548934 - MSTB LTR MaLR -191 235 1 355 253 38 89 chr4 105739730 105739784 -78548878 + MIR SINE MIR 105 160 -102 302 80 20 0 chr4 105739784 105739834 -78548828 + (TA)n Simple_repeat Simple_repeat 1 51 0 355 253 38 89 chr4 105739834 105739937 -78548725 + MIR SINE MIR 160 254 -8 267 180 24 0 chr4 105741035 105741090 -78547572 + Alu SINE Alu 246 290 -10 6782 72 22 31 chr4 105741098 105742951 -78545711 + SVA Other Other 1 1433 0 376 292 80 7 chr4 105742958 105743095 -78545567 + L1MC3 LINE L1 51 197 -6226 806 238 168 8 chr4 105743566 105743657 -78545005 + L1MC3 LINE L1 4858 4933 -2008 559 13 0 39 chr4 105743657 105743735 -78544927 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 806 238 168 8 chr4 105743735 105743899 -78544763 + L1MC3 LINE L1 4933 5154 -1787 4981 198 46 2 chr4 105743925 105744833 -78543829 + L1MA5 LINE L1 3 933 -6235 12326 167 31 20 chr4 105744835 105747294 -78541368 + L1MA5 LINE L1 3397 5881 -1286 5761 158 21 14 chr4 105752139 105753580 -78535082 + L1MA5 LINE L1 5870 7319 -2 * 9413 190 64 65 chr4 105753578 105755502 -78533160 + L1MC3 LINE L1 5153 7077 -62 2065 122 154 16 chr4 105755502 105755878 -78532784 - MSTA LTR MaLR 0 428 1 1963 145 3 3 chr4 105755885 105756189 -78532473 - AluJb SINE Alu -4 308 5 9413 190 64 65 chr4 105756189 105756877 -78531785 + L1MC3 LINE L1 7083 7770 631 568 104 0 0 chr4 105756877 105756954 -78531708 + MADE1 DNA Mariner 4 80 0 9413 190 64 65 chr4 105756954 105757097 -78531565 + L1MC3 LINE L1 7770 6560 -579 259 264 23 23 chr4 105757097 105757184 -78531478 + MLT1F1 LTR MaLR 38 124 -443 9413 190 64 65 chr4 105757184 105757765 -78530897 + L1MC3 LINE L1 6559 7139 0 2511 65 0 0 chr4 105757920 105758230 -78530432 - AluY SINE Alu -1 310 1 242 262 107 39 chr4 105758878 105758981 -78529681 + MER91C DNA MER1_type 31 140 0 397 263 229 23 chr4 105759104 105759279 -78529383 - MIR SINE MIR -9 253 43 2425 75 0 0 chr4 105759695 105759990 -78528672 - AluY SINE Alu -16 295 1 346 313 36 9 chr4 105760460 105760572 -78528090 + L2 LINE L2 2225 2339 -975 1779 181 0 6 chr4 105760898 105761212 -78527450 - AluJo SINE Alu 0 312 1 1083 179 25 20 chr4 105761471 105761672 -78526990 + MER105 DNA DNA 3 204 0 237 132 0 0 chr4 105761812 105761850 -78526812 + (CA)n Simple_repeat Simple_repeat 2 39 0 1699 197 0 16 chr4 105763097 105763406 -78525256 + AluJo SINE Alu 1 304 -8 397 281 144 7 chr4 105764801 105764954 -78523708 + MIR SINE MIR 19 192 -70 540 244 0 8 chr4 105765298 105765429 -78523233 + L2 LINE L2 3184 3313 0 35 0 0 0 chr4 105765558 105765593 -78523069 + AT_rich Low_complexity Low_complexity 1 35 0 2167 48 4 0 chr4 105765593 105765844 -78522818 - L1PA5 LINE L1 -7 6147 5896 1318 176 113 41 chr4 105766968 105767286 -78521376 - MER2 DNA MER2_type -3 341 1 420 277 73 17 chr4 105767312 105767489 -78521173 + MIR3 SINE MIR 21 207 -1 274 218 151 45 chr4 105767490 105767604 -78521058 + MIR SINE MIR 32 157 -63 44018 47 2 4 chr4 105767738 105773907 -78514755 - L1PA4 LINE L1 0 6155 1 412 233 17 160 chr4 105774062 105774156 -78514506 + MIR3 SINE MIR 9 68 -140 2037 108 0 0 chr4 105774156 105774424 -78514238 + AluSx SINE Alu 40 307 -5 412 233 17 160 chr4 105774424 105774519 -78514143 + MIR3 SINE MIR 68 175 -33 440 262 139 56 chr4 105775901 105776275 -78512387 - MLT1K LTR MaLR -16 572 168 320 304 78 0 chr4 105776454 105776569 -78512093 - MIR3 SINE MIR 0 208 85 1352 171 83 23 chr4 105776858 105777122 -78511540 + AluJb SINE Alu 1 280 -32 189 0 0 0 chr4 105777122 105777143 -78511519 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 290 289 195 11 chr4 105777472 105777662 -78511000 + MIR SINE MIR 32 256 -6 190 328 34 34 chr4 105778206 105778325 -78510337 - L2 LINE L2 -979 2335 2217 347 209 61 61 chr4 105780165 105780280 -78508382 + L1ME4a LINE L1 5976 6090 -31 332 279 71 121 chr4 105780281 105780427 -78508235 - MIR SINE MIR -3 259 128 747 194 0 8 chr4 105780427 105780561 -78508101 - FLAM_C SINE Alu 0 133 1 332 279 71 121 chr4 105780561 105780654 -78508008 - MIR SINE MIR -134 128 32 821 205 0 0 chr4 105780666 105780793 -78507869 + FLAM_A SINE Alu 1 127 -6 315 0 0 0 chr4 105780842 105780877 -78507785 + (CA)n Simple_repeat Simple_repeat 2 36 0 347 102 17 0 chr4 105780991 105781003 -78507659 + (GAAA)n Simple_repeat Simple_repeat 3 13 -49 1932 139 33 3 chr4 105781003 105781305 -78507357 + AluJb SINE Alu 1 311 -1 347 102 17 0 chr4 105781305 105781351 -78507311 + (GAAA)n Simple_repeat Simple_repeat 13 62 0 232 314 12 12 chr4 105781548 105781634 -78507028 + L3b LINE CR1 1221 1306 -277 * 801 283 134 27 chr4 105781632 105782006 -78506656 + L3 LINE CR1 1054 1467 -110 449 278 62 28 chr4 105782439 105782615 -78506047 + MIR SINE MIR 81 262 0 2155 87 0 28 chr4 105783043 105783332 -78505330 - AluSg SINE Alu -25 285 5 4775 25 0 4 chr4 105783658 105784181 -78504481 - L1PA5 LINE L1 -6 6148 5628 449 245 117 97 chr4 105784227 105784852 -78503810 + L1ME3A LINE L1 5273 5947 -223 1352 211 86 0 chr4 105785077 105785437 -78503225 - Charlie5 DNA MER1_type 0 2624 2234 529 136 82 9 chr4 105785465 105785575 -78503087 - Charlie5 DNA MER1_type -2489 123 6 623 304 12 4 chr4 105788058 105788311 -78500351 + L1MC4 LINE L1 7241 7495 -547 618 271 76 53 chr4 105788295 105788911 -78499751 + L1MC4 LINE L1 7311 8042 0 * 348 300 11 0 chr4 105789708 105789798 -78498864 + L1MC4a LINE L1 5488 5578 -2230 928 208 154 54 chr4 105789861 105790193 -78498469 + MLT1A1 LTR MaLR 1 365 0 436 281 60 20 chr4 105790245 105790494 -78498168 + L1MC4a LINE L1 5692 5950 -1858 512 195 16 97 chr4 105790551 105790706 -78497956 - LTR50 LTR ERVL -182 613 395 1976 189 18 20 chr4 105790706 105791103 -78497559 - MSTD LTR MaLR 0 396 1 512 195 16 97 chr4 105791103 105791143 -78497519 - LTR50 LTR ERVL -400 395 353 704 193 127 28 chr4 105791161 105791342 -78497320 - LTR50 LTR ERVL -596 199 1 1606 137 4 8 chr4 105791564 105791805 -78496857 - AluJb SINE Alu -15 297 58 1715 164 29 23 chr4 105792901 105793211 -78495451 + AluJb SINE Alu 1 312 0 678 270 143 17 chr4 105795301 105795594 -78493068 - MER102a DNA MER1_type 0 330 1 2958 166 25 59 chr4 105795662 105796515 -78492147 + LTR1 LTR ERV1 1 785 0 203 356 0 0 chr4 105796518 105796577 -78492085 + L3 LINE CR1 1508 1566 -11 1944 149 3 0 chr4 105797141 105797430 -78491232 - AluSx SINE Alu -22 290 1 293 253 0 36 chr4 105797885 105797968 -78490694 - L2 LINE L2 -57 3256 3177 248 296 148 28 chr4 105798877 105799019 -78489643 + L2 LINE L2 3155 3313 0 194 358 64 69 chr4 105799449 105799653 -78489009 + MIR3 SINE MIR 4 206 -2 5668 227 44 28 chr4 105800692 105801708 -78486954 + L1M4 LINE L1 3359 4418 -1728 1994 164 3 0 chr4 105801708 105802019 -78486643 + AluJb SINE Alu 1 312 0 5668 227 44 28 chr4 105802019 105802775 -78485887 + L1M4 LINE L1 4418 5160 -986 7004 111 9 0 chr4 105802875 105804715 -78483947 + L1PA10 LINE L1 4310 6157 -11 413 377 30 9 chr4 105804889 105805118 -78483544 + MIR SINE MIR 30 261 -1 1018 252 7 5 chr4 105805796 105806045 -78482617 - MLT1H LTR MaLR -327 222 1 1759 171 7 10 chr4 105806060 105806353 -78482309 - AluJb SINE Alu -20 292 1 1463 276 40 29 chr4 105806392 105806870 -78481792 - LTR16C LTR ERVL 0 491 9 208 264 264 25 chr4 105806971 105807092 -78481570 + MIR SINE MIR 92 241 -21 1786 243 10 6 chr4 105807298 105807816 -78480846 + L1M4 LINE L1 2639 3158 -2988 209 282 40 0 chr4 105807978 105808058 -78480604 - MIR SINE MIR -100 108 22 23 0 0 0 chr4 105808266 105808289 -78480373 + AT_rich Low_complexity Low_complexity 1 23 0 501 325 30 0 chr4 105808375 105808541 -78480121 + MIR3 SINE MIR 34 204 -4 2365 100 0 0 chr4 105808870 105809179 -78479483 - AluSg SINE Alu -1 309 1 441 329 77 30 chr4 105809392 105809626 -78479036 - MIR SINE MIR 0 262 18 481 290 113 39 chr4 105810075 105810306 -78478356 - MIR SINE MIR 0 262 15 406 257 0 0 chr4 105812112 105812213 -78476449 - LTR53 LTR ERVL -149 370 270 201 147 0 0 chr4 105812448 105812482 -78476180 + (GA)n Simple_repeat Simple_repeat 2 35 0 237 33 0 0 chr4 105813133 105813163 -78475499 + (ATG)n Simple_repeat Simple_repeat 3 32 0 23093 83 13 3 chr4 105813265 105817469 -78471193 + L1PA7 LINE L1 1908 6154 0 300 214 0 0 chr4 105817710 105817766 -78470896 + L1MC4 LINE L1 6648 6703 -1339 2739 86 0 0 chr4 105817767 105818148 -78470514 + L1PB1 LINE L1 5784 6164 0 333 336 18 24 chr4 105818517 105818688 -78469974 - MER5B DNA MER1_type 0 178 22 2791 199 39 2 chr4 105818766 105819309 -78469353 + MLT1F1 LTR MaLR 1 563 -4 22 56 0 0 chr4 105821512 105821548 -78467114 + AT_rich Low_complexity Low_complexity 1 36 0 1645 125 61 79 chr4 105822018 105822361 -78466301 - MER1B DNA MER1_type 0 337 1 793 207 207 0 chr4 105822826 105823125 -78465537 - MER69 DNA AcHobo 0 2526 2166 5478 143 26 48 chr4 105823484 105824212 -78464450 + L1MC1 LINE L1 5231 5928 -405 1991 124 0 0 chr4 105824212 105824516 -78464146 - AluSx SINE Alu 0 314 11 5478 143 26 48 chr4 105824516 105824895 -78463767 + L1MC1 LINE L1 5928 6314 -19 2774 93 3 3 chr4 105825969 105826344 -78462318 + THE1C LTR MaLR 1 375 0 2429 161 29 5 chr4 105826421 105826837 -78461825 + MSTB LTR MaLR 1 426 0 21 36 0 0 chr4 105827126 105827154 -78461508 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 105827694 105827715 -78460947 + AT_rich Low_complexity Low_complexity 1 21 0 756 190 33 87 chr4 105827923 105828050 -78460612 - MER5B DNA MER1_type 0 178 62 2328 66 10 13 chr4 105828050 105828355 -78460307 - AluSg1 SINE Alu -5 304 1 756 190 33 87 chr4 105828355 105828411 -78460251 - MER5B DNA MER1_type -116 62 5 321 82 0 0 chr4 105828826 105828875 -78459787 + (CA)n Simple_repeat Simple_repeat 2 50 0 238 356 47 0 chr4 105829844 105830035 -78458627 + L1M4 LINE L1 4773 4972 -1174 274 387 108 0 chr4 105830796 105830907 -78457755 - L2 LINE L2 -16 3256 3134 198 71 0 0 chr4 105831936 105831964 -78456698 + (TG)n Simple_repeat Simple_repeat 2 29 0 339 204 80 11 chr4 105832216 105832304 -78456358 - MLT1K LTR MaLR -7 581 488 561 342 39 42 chr4 105832369 105832705 -78455957 - MLT1K LTR MaLR -236 352 18 277 302 21 10 chr4 105834115 105834211 -78454451 - MLT1L LTR MaLR -160 455 359 324 212 111 10 chr4 105834683 105834782 -78453880 + L1ME4a LINE L1 5956 6064 -57 23 54 0 0 chr4 105834930 105834967 -78453695 + AT_rich Low_complexity Low_complexity 1 37 0 885 250 95 8 chr4 105835306 105835569 -78453093 - MLT1A1 LTR MaLR -12 353 68 1620 156 52 18 chr4 105835569 105835695 -78452967 + MER44D DNA MER2_type 1 121 -2370 9399 195 64 70 chr4 105835695 105836879 -78451783 + Tigger2 DNA MER2_type 2 1192 -1526 219 36 0 0 chr4 105836879 105836907 -78451755 + (CAA)n Simple_repeat Simple_repeat 1 28 0 9399 195 64 70 chr4 105836907 105838456 -78450206 + Tigger2 DNA MER2_type 1192 2718 0 1620 156 52 18 chr4 105838456 105838657 -78450005 + MER44D DNA MER2_type 121 609 0 285 197 0 79 chr4 105838657 105838733 -78449929 - MLT1A1 LTR MaLR -304 70 1 2604 265 67 20 chr4 105839281 105840115 -78448547 + L2 LINE L2 2006 2878 -436 1020 180 73 31 chr4 105840117 105840378 -78448284 - ORSL DNA AcHobo -1 274 3 373 283 19 19 chr4 105841593 105841699 -78446963 - MER5B DNA MER1_type -1 177 72 21 0 0 0 chr4 105842591 105842612 -78446050 + AT_rich Low_complexity Low_complexity 1 21 0 276 257 285 56 chr4 105843289 105843433 -78445229 + MIR3 SINE MIR 1 177 -31 459 223 11 0 chr4 105843711 105843805 -78444857 + FLAM_A SINE Alu 1 95 -47 215 200 44 0 chr4 105844572 105844617 -78444045 + CT-rich Low_complexity Low_complexity 4 50 0 24 0 0 0 chr4 105845663 105845687 -78442975 + AT_rich Low_complexity Low_complexity 1 24 0 304 315 40 36 chr4 105846019 105846241 -78442421 + L1MC4a LINE L1 5644 5866 -1942 27 29 0 0 chr4 105846241 105846275 -78442387 + AT_rich Low_complexity Low_complexity 1 34 0 1683 161 46 23 chr4 105846392 105846697 -78441965 + AluSx SINE Alu 1 312 0 215 308 0 31 chr4 105847221 105847286 -78441376 - MIR SINE MIR -157 105 43 1239 228 4 0 chr4 105847496 105847768 -78440894 + LTR53 LTR ERVL 189 461 -58 388 326 93 12 chr4 105848357 105848529 -78440133 + MIR SINE MIR 52 237 -25 1327 135 49 146 chr4 105849128 105849376 -78439286 - MER7A DNA MER2_type -2692 346 148 2303 108 116 13 chr4 105849376 105849502 -78439160 - MSTA LTR MaLR 0 428 316 2405 72 0 16 chr4 105849502 105849809 -78438853 - AluY SINE Alu -9 302 1 2303 108 116 13 chr4 105849809 105850070 -78438592 - MSTA LTR MaLR -112 316 1 1327 135 49 146 chr4 105850070 105850206 -78438456 - MER7A DNA MER2_type -2890 148 1 265 132 0 4 chr4 105852109 105852153 -78436509 - MLT2B1 LTR ERVL 0 554 511 484 15 31 0 chr4 105852153 105852218 -78436444 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 1670 178 36 42 chr4 105852235 105852595 -78436067 - MLT2B1 LTR ERVL -159 361 4 2025 138 3 3 chr4 105852600 105852891 -78435771 + AluSq SINE Alu 6 296 -17 430 296 99 6 chr4 105852947 105853119 -78435543 + MLT1J2 LTR MaLR 263 450 0 1522 265 35 49 chr4 105854123 105854697 -78433965 + L1M3e LINE L1 466 1031 -6458 12564 203 29 24 chr4 105854720 105859112 -78429550 + L1M3e LINE L1 1897 6312 -1253 737 234 78 47 chr4 105860117 105860374 -78428288 - L2 LINE L2 0 3313 3049 303 160 0 0 chr4 105860607 105860657 -78428005 - L2 LINE L2 0 3313 3264 387 285 74 48 chr4 105860665 105861076 -78427586 - MLT1K LTR MaLR 0 588 137 192 40 0 0 chr4 105862032 105862057 -78426605 + (A)n Simple_repeat Simple_repeat 1 25 0 493 312 29 0 chr4 105862558 105862728 -78425934 - MIR SINE MIR -16 246 72 10770 64 0 6 chr4 105862768 105864211 -78424451 + L1P LINE L1 2 1435 -4711 817 154 0 0 chr4 105914211 105914334 -78374328 - AluSq/x SINE Alu -190 123 1 1462 132 0 0 chr4 105914334 105914539 -78374123 + AluSg/x SINE Alu 103 307 -5 1654 36 0 0 chr4 105914934 105915129 -78373533 + L1PA5 LINE L1 5952 6146 -8 21 36 0 0 chr4 105915129 105915157 -78373505 + AT_rich Low_complexity Low_complexity 1 28 0 299 70 0 0 chr4 105915203 105915246 -78373416 + Alu SINE Alu 1 43 -259 1683 120 0 8 chr4 105915647 105915888 -78372774 + AluSx SINE Alu 60 298 -14 1410 222 98 15 chr4 105915893 105916416 -78372246 + HAL1 LINE L1 991 1556 -951 1043 216 32 20 chr4 105916420 105916670 -78371992 - AluSc SINE Alu -19 290 38 2148 90 7 17 chr4 105917029 105917358 -78371304 + AluSq SINE Alu 1 326 0 231 36 0 0 chr4 105917363 105917391 -78371271 + Alu SINE Alu 84 111 -190 306 74 0 19 chr4 105917392 105917446 -78371216 + Alu SINE Alu 247 299 -1 301 235 242 14 chr4 105917466 105917660 -78371002 + MIR SINE MIR 27 262 0 199 147 29 0 chr4 105917730 105917764 -78370898 + MIR SINE MIR 217 251 -11 1139 136 27 0 chr4 105918069 105918253 -78370409 + Tigger3(Golem) DNA MER2_type 2840 3028 -1 969 226 27 119 chr4 105918486 105918898 -78369764 - L2 LINE L2 0 3313 2940 327 279 114 38 chr4 105919099 105919257 -78369405 + L1ME4a LINE L1 4026 4195 -1951 367 328 49 11 chr4 105919276 105919459 -78369203 + L1ME4a LINE L1 4251 4440 -1706 309 273 67 39 chr4 105919500 105919782 -78368880 + L1ME4a LINE L1 4509 4798 -1348 297 229 18 18 chr4 105919917 105920026 -78368636 + L1MDa LINE L1 1267 1375 -5165 2092 108 0 52 chr4 105920175 105920499 -78368163 + AluY SINE Alu 1 307 -4 309 269 21 0 chr4 105920502 105920595 -78368067 + MLT1G1 LTR MaLR 100 194 -401 530 283 82 0 chr4 105920959 105921118 -78367544 + MIR SINE MIR 86 257 -5 186 297 54 40 chr4 105921216 105921290 -78367372 + MER5B DNA MER1_type 3 77 -101 * 753 279 40 40 chr4 105921231 105921478 -78367184 + MIR SINE MIR 8 254 -8 2272 97 0 0 chr4 105921481 105921770 -78366892 - AluSg SINE Alu -19 291 3 218 306 0 14 chr4 105921863 105921935 -78366727 + L2 LINE L2 3183 3253 -19 676 263 80 42 chr4 105922133 105922603 -78366059 + MLT1L LTR MaLR 87 606 -9 1749 188 0 7 chr4 105922623 105922921 -78365741 + AluJo SINE Alu 1 296 -16 486 292 151 22 chr4 105923084 105923529 -78365133 + L1ME4a LINE L1 5442 5943 -178 2231 149 52 0 chr4 105923938 105924321 -78364341 + L1MC1 LINE L1 5913 6315 -18 1948 92 53 18 chr4 105924329 105924611 -78364051 + AluSg SINE Alu 1 292 -18 461 324 147 31 chr4 105925744 105926167 -78362495 + L2 LINE L2 2385 2856 -458 761 88 10 0 chr4 105926285 105926387 -78362275 - AluSq/x SINE Alu -208 105 3 2195 127 0 3 chr4 105926401 105926701 -78361961 - AluSp SINE Alu -14 299 1 539 180 14 43 chr4 105926726 105926865 -78361797 + HAL1 LINE L1 1627 1761 -746 379 283 0 28 chr4 105927222 105927328 -78361334 + MIR SINE MIR 2 104 -158 952 145 66 6 chr4 105927400 105927566 -78361096 + AluSq SINE Alu 123 298 -15 181 254 48 0 chr4 105927567 105927630 -78361032 + MIR SINE MIR 197 262 0 2171 113 3 13 chr4 105927649 105927950 -78360712 + AluSp SINE Alu 1 298 -15 473 280 21 53 chr4 105928036 105928225 -78360437 + MLT1I LTR MaLR 5 187 -222 22 0 0 0 chr4 105928291 105928313 -78360349 + AT_rich Low_complexity Low_complexity 1 22 0 858 199 38 110 chr4 105928356 105928783 -78359879 + Charlie5 DNA MER1_type 34 429 -2183 1470 171 43 11 chr4 105928786 105929138 -78359524 - L1MDa LINE L1 -3943 2597 2235 1033 178 7 185 chr4 105929140 105929443 -78359219 - L1MD2 LINE L1 -1 6358 6157 2193 105 3 0 chr4 105929443 105929738 -78358924 - AluSx SINE Alu -16 296 1 1033 178 7 185 chr4 105929738 105929877 -78358785 - L1MD2 LINE L1 -202 6157 5995 354 174 12 23 chr4 105930014 105930100 -78358562 - L1MD2 LINE L1 -143 6216 6132 958 193 72 35 chr4 105930133 105930423 -78358239 - L1MD2 LINE L1 -210 6149 5849 427 246 25 79 chr4 105930510 105930713 -78357949 + MLT1D LTR MaLR 1 192 -313 582 167 0 0 chr4 105930723 105930819 -78357843 + FLAM_A SINE Alu 20 115 -27 294 29 0 0 chr4 105930829 105930864 -78357798 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 1266 200 12 4 chr4 105930933 105931188 -78357474 + MLT1D LTR MaLR 246 502 -3 653 205 80 0 chr4 105931188 105931388 -78357274 - L1MDa LINE L1 -4390 2150 1935 383 200 11 103 chr4 105931390 105931467 -78357195 + Charlie5 DNA MER1_type 423 505 -2119 231 36 0 0 chr4 105931467 105931495 -78357167 + (TTA)n Simple_repeat Simple_repeat 3 30 0 1471 44 17 0 chr4 105931495 105931675 -78356987 - L1PA3 LINE L1 -18 6137 5955 383 200 11 103 chr4 105931675 105931781 -78356881 + Charlie5 DNA MER1_type 503 590 -2034 1633 85 0 0 chr4 105931786 105931987 -78356675 + AluSq SINE Alu 1 201 -112 1334 152 73 35 chr4 105932095 105932158 -78356504 + Charlie5 DNA MER1_type 1583 1642 -982 2177 78 0 41 chr4 105932158 105932482 -78356180 - AluY SINE Alu 0 312 1 1334 152 73 35 chr4 105932482 105932733 -78355929 + Charlie5 DNA MER1_type 1642 1910 -714 1960 142 10 10 chr4 105932733 105933029 -78355633 - AluJb SINE Alu -16 296 1 381 118 59 0 chr4 105933042 105933110 -78355552 + Charlie5 DNA MER1_type 2514 2585 -27 337 288 174 14 chr4 105933139 105933563 -78355099 - L1P LINE L1 -914 5232 4741 292 136 34 17 chr4 105934855 105934914 -78353748 + LTR67 LTR ERVL 490 549 -8 2185 123 0 0 chr4 105935487 105935788 -78352874 - AluSx SINE Alu -11 301 1 192 190 112 129 chr4 105935883 105935999 -78352663 + L2 LINE L2 3159 3272 0 204 271 123 57 chr4 105936102 105936224 -78352438 - L2 LINE L2 -5 3267 3138 206 353 48 48 chr4 105936496 105936682 -78351980 - L2 LINE L2 -456 2858 2673 504 251 147 6 chr4 105936682 105936845 -78351817 + MER5A DNA MER1_type 4 189 0 24 0 0 0 chr4 105937680 105937704 -78350958 + AT_rich Low_complexity Low_complexity 1 24 0 352 328 123 0 chr4 105938690 105938885 -78349777 - MIR SINE MIR -13 249 31 359 62 0 0 chr4 105939476 105939524 -78349138 - AluSc SINE Alu -91 208 161 2169 97 3 10 chr4 105939861 105940160 -78348502 + AluSx SINE Alu 1 297 -15 586 213 59 7 chr4 105940254 105940390 -78348272 + MIR3 SINE MIR 60 202 -6 22 0 0 0 chr4 105941717 105941739 -78346923 + AT_rich Low_complexity Low_complexity 1 22 0 318 198 121 11 chr4 105941948 105942027 -78346635 - L1MC4 LINE L1 -1339 6703 6611 216 0 0 0 chr4 105942027 105942051 -78346611 + (GA)n Simple_repeat Simple_repeat 2 25 0 318 198 121 11 chr4 105942051 105942062 -78346600 - L1MC4 LINE L1 -1431 6611 6603 2250 122 0 0 chr4 105942450 105942753 -78345909 + AluSx SINE Alu 1 303 -9 2182 122 0 0 chr4 105943157 105943468 -78345194 + AluSx SINE Alu 1 311 0 2167 110 7 3 chr4 105943497 105943796 -78344866 + AluSq SINE Alu 1 300 -13 2245 102 0 29 chr4 105944546 105944860 -78343802 + AluSx SINE Alu 1 305 -7 2024 145 0 7 chr4 105945023 105945326 -78343336 + AluSx SINE Alu 1 301 -11 2233 115 3 10 chr4 105945462 105945775 -78342887 + AluSx SINE Alu 2 312 0 761 188 170 128 chr4 105946069 105946464 -78342198 - MLT1J2 LTR MaLR -2 448 32 2231 70 0 43 chr4 105946464 105946807 -78341855 + AluY SINE Alu 1 311 0 761 188 170 128 chr4 105946807 105946841 -78341821 - MLT1J2 LTR MaLR -418 32 1 231 61 0 0 chr4 105947301 105947334 -78341328 + (T)n Simple_repeat Simple_repeat 1 33 0 485 223 72 7 chr4 105948040 105948179 -78340483 + MIR SINE MIR 97 244 -18 471 234 56 0 chr4 105949467 105949574 -78339088 + MIR SINE MIR 2 114 -148 13154 175 25 41 chr4 105949674 105951607 -78337055 + L1MA4A LINE L1 2559 4521 -2484 1707 163 0 19 chr4 105951607 105951908 -78336754 + AluJo SINE Alu 17 312 0 13154 175 25 41 chr4 105951908 105953504 -78335158 + L1MA4A LINE L1 4521 6081 -924 2188 87 14 0 chr4 105953504 105953790 -78334872 + AluSc SINE Alu 1 290 -19 13154 175 25 41 chr4 105953790 105954676 -78333986 + L1MA4A LINE L1 6081 6980 -25 330 262 111 36 chr4 105954682 105954934 -78333728 + HAL1 LINE L1 1735 2005 -502 715 197 84 102 chr4 105954973 105955445 -78333217 - MER31B LTR ERV1 -3 511 1 196 125 0 42 chr4 105955455 105955503 -78333159 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 1415 178 50 36 chr4 105955512 105955793 -78332869 - AluJo SINE Alu -4 308 24 4174 104 3 11 chr4 105955886 105956501 -78332161 + MER4B LTR ERV1 1 610 0 1615 304 147 13 chr4 105957005 105957834 -78330828 - L2 LINE L2 -583 2731 1792 934 162 118 25 chr4 105957905 105958109 -78330553 - MSTD LTR MaLR -173 223 1 323 307 201 50 chr4 105959000 105959184 -78329478 + L2 LINE L2 2924 3079 -234 479 251 41 6 chr4 105959184 105959355 -78329307 + MER104 DNA MER2_type 1 177 -3 323 307 201 50 chr4 105959355 105959509 -78329153 + L2 LINE L2 3079 3313 0 845 125 0 29 chr4 105959525 105959661 -78329001 - FLAM_C SINE Alu -1 132 1 2244 98 19 19 chr4 105959819 105960126 -78328536 - AluSx SINE Alu -5 307 1 328 303 6 56 chr4 105961606 105961774 -78326888 + MIR SINE MIR 37 187 -63 2234 114 3 0 chr4 105963468 105963765 -78324897 + AluSq SINE Alu 1 298 -15 1256 128 55 166 chr4 105963776 105963893 -78324769 + AluJb SINE Alu 1 129 -183 1336 77 0 0 chr4 105963893 105964074 -78324588 + L1PA8 LINE L1 5992 6172 0 1256 128 55 166 chr4 105964074 105964094 -78324568 + AluJb SINE Alu 129 150 -162 2126 122 0 7 chr4 105964094 105964389 -78324273 + AluSx SINE Alu 1 293 -19 1256 128 55 166 chr4 105964389 105964593 -78324069 + AluJb SINE Alu 150 305 -7 772 316 89 30 chr4 105964642 105964858 -78323804 - HAL1 LINE L1 -1575 932 730 2301 105 3 10 chr4 105964858 105965172 -78323490 + AluSx SINE Alu 1 312 0 772 316 89 30 chr4 105965172 105965414 -78323248 - HAL1 LINE L1 -1777 730 447 301 254 0 0 chr4 105965545 105965612 -78323050 - HAL1 LINE L1 -2324 183 117 366 23 0 0 chr4 105965624 105965667 -78322995 + (TTCC)n Simple_repeat Simple_repeat 3 45 0 1086 48 54 0 chr4 105965667 105965834 -78322828 + CT-rich Low_complexity Low_complexity 1 176 0 2059 118 50 0 chr4 105965836 105966226 -78322436 - AluSx SINE Alu 0 405 1 250 276 43 49 chr4 105966238 105966401 -78322261 - HAL1 LINE L1 -2342 165 4 266 73 24 0 chr4 105967067 105967108 -78321554 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 335 327 133 76 chr4 105967108 105967423 -78321239 - L2 LINE L2 -16 3256 2924 2036 119 0 44 chr4 105969219 105969543 -78319119 - AluSx SINE Alu 0 315 5 816 241 16 27 chr4 105969562 105969775 -78318887 - MIR SINE MIR -44 218 7 21 57 0 0 chr4 105970092 105970127 -78318535 + AT_rich Low_complexity Low_complexity 1 35 0 1363 157 9 4 chr4 105971015 105971244 -78317418 + MER30 DNA MER1_type 1 230 0 2236 114 0 0 chr4 105971596 105971885 -78316777 + AluSx SINE Alu 1 289 -23 1158 81 13 0 chr4 105971987 105972136 -78316526 + AluSg/x SINE Alu 152 302 -8 409 340 0 0 chr4 105973933 105974036 -78314626 - MIR SINE MIR -80 128 26 183 234 0 21 chr4 105974305 105974352 -78314310 + L3b LINE CR1 1140 1185 -398 2169 89 0 0 chr4 105974635 105974905 -78313757 + AluSg SINE Alu 1 270 -40 188 0 74 0 chr4 105974920 105974947 -78313715 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 266 330 0 68 chr4 105975182 105975270 -78313392 - MIR SINE MIR -86 122 41 1847 170 50 84 chr4 105975353 105975876 -78312786 + MLT1D LTR MaLR 1 505 0 2683 106 0 10 chr4 105975960 105976366 -78312296 - L1PB1 LINE L1 -8 6143 5742 372 59 0 0 chr4 105976391 105976442 -78312220 + (TATG)n Simple_repeat Simple_repeat 2 52 0 1582 157 103 0 chr4 105976443 105976705 -78311957 - AluJb SINE Alu -23 289 1 21 0 0 0 chr4 105977645 105977666 -78310996 + AT_rich Low_complexity Low_complexity 1 21 0 2293 106 6 3 chr4 105977678 105977989 -78310673 + AluSx SINE Alu 1 312 0 2187 132 0 3 chr4 105978331 105978641 -78310021 - AluSx SINE Alu -3 309 1 1893 98 33 14 chr4 105979779 105980083 -78308579 - AluY SINE Alu 0 309 1 45 34 0 0 chr4 105981046 105981105 -78307557 + AT_rich Low_complexity Low_complexity 1 59 0 360 294 71 0 chr4 105981285 105981411 -78307251 + MIR SINE MIR 120 254 -8 653 306 87 33 chr4 105982138 105982471 -78306191 - L2 LINE L2 -704 2610 2260 24 67 0 0 chr4 105984469 105984514 -78304148 + AT_rich Low_complexity Low_complexity 1 45 0 855 65 0 0 chr4 105984529 105984636 -78304026 + U6 snRNA snRNA 1 107 0 349 259 107 0 chr4 105984974 105985086 -78303576 - L2 LINE L2 -10 3303 3180 2012 131 3 3 chr4 105985136 105985434 -78303228 + AluJb SINE Alu 1 298 -14 921 136 0 94 chr4 105985438 105985629 -78303033 + AluJb SINE Alu 130 302 -10 853 296 122 90 chr4 105985795 105987224 -78301438 - L2 LINE L2 -656 2658 1184 2208 98 3 7 chr4 105987563 105987858 -78300804 + AluSx SINE Alu 1 294 -18 599 250 26 0 chr4 105988345 105988497 -78300165 + MER58B DNA MER1_type 175 330 -11 1890 84 130 0 chr4 105989210 105989471 -78299191 + AluY SINE Alu 1 295 -6 603 205 16 33 chr4 105989569 105989691 -78298971 + L2 LINE L2 3194 3313 0 2243 122 0 3 chr4 105990310 105990621 -78298041 - AluSq SINE Alu -3 310 1 309 51 0 0 chr4 105990815 105990854 -78297808 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr4 105991081 105991109 -78297553 + AT_rich Low_complexity Low_complexity 1 28 0 1928 107 9 98 chr4 105991367 105991705 -78296957 - AluSp SINE Alu -5 308 1 808 197 0 43 chr4 105991928 105992116 -78296546 + AluY SINE Alu 14 193 -118 1740 170 49 7 chr4 105992263 105992551 -78296111 - AluSx SINE Alu -12 300 1 1929 187 35 3 chr4 105992551 105992989 -78295673 + MLT2B1 LTR ERVL 3 504 -11 501 252 55 24 chr4 105992996 105993123 -78295539 + MLT1G3 LTR MaLR 367 497 -33 1966 128 0 42 chr4 105993310 105993616 -78295046 - AluSx SINE Alu -19 293 1 300 283 81 30 chr4 105993770 105994083 -78294579 - L1M4 LINE L1 -950 5196 4860 1472 171 35 49 chr4 105994103 105994412 -78294250 - AluJo SINE Alu 0 305 1 302 253 0 25 chr4 105995271 105995350 -78293312 - Charlie4 DNA MER1_type -1 1960 1884 415 313 154 0 chr4 105995451 105995659 -78293003 - MIR SINE MIR -5 257 18 243 271 57 14 chr4 105995724 105995794 -78292868 - MIR SINE MIR -170 92 20 322 282 218 16 chr4 105996972 105997160 -78291502 - MIR SINE MIR -17 245 20 2092 124 7 3 chr4 105998589 105998896 -78289766 + AluSp SINE Alu 1 308 -5 1994 135 11 0 chr4 105998962 105999244 -78289418 - AluY SINE Alu -26 285 1 208 304 101 0 chr4 105999434 105999513 -78289149 - L2 LINE L2 -237 3035 2949 289 309 113 54 chr4 105999617 105999785 -78288877 - MER5B DNA MER1_type -3 175 9 215 266 228 0 chr4 106000150 106000229 -78288433 - MIR SINE MIR -146 116 20 2145 112 6 10 chr4 106000909 106001223 -78287439 - AluSp SINE Alu 0 313 1 1372 159 55 8 chr4 106001699 106001956 -78286706 - AluJb SINE Alu -31 281 13 2060 116 41 0 chr4 106001986 106002278 -78286384 - AluSq SINE Alu -9 304 1 2166 113 0 0 chr4 106002497 106002789 -78285873 + AluY SINE Alu 1 292 -19 637 161 22 58 chr4 106002801 106002938 -78285724 + FLAM_C SINE Alu 1 132 -1 230 207 0 22 chr4 106003043 106003102 -78285560 - MIR SINE MIR -103 105 50 2171 92 20 3 chr4 106003120 106003412 -78285250 + AluSx SINE Alu 2 298 -14 218 191 206 0 chr4 106003469 106003532 -78285130 - MIR SINE MIR -74 188 113 229 271 156 50 chr4 106004298 106004375 -78284287 - L1ME4a LINE L1 -34 6087 6020 2051 106 18 0 chr4 106004375 106004657 -78284005 - AluSx SINE Alu -25 287 1 229 271 156 50 chr4 106004657 106004918 -78283744 - L1ME4a LINE L1 -101 6020 5713 813 232 89 5 chr4 106005576 106005766 -78282896 - MER63A DNA MER1_type -3 207 2 2449 73 3 0 chr4 106006096 106006396 -78282266 + AluY SINE Alu 1 301 -10 1269 225 132 9 chr4 106006425 106006758 -78281904 - MLT1A2 LTR MaLR 0 374 1 438 292 109 66 chr4 106006936 106007313 -78281349 - L2 LINE L2 0 3313 2921 885 191 7 46 chr4 106007809 106007999 -78280663 - MER58A DNA MER1_type 0 168 4 406 245 80 61 chr4 106007999 106008196 -78280466 + MLT1H LTR MaLR 388 567 0 977 211 64 64 chr4 106008207 106008452 -78280210 - Charlie2 DNA MER1_type 0 2862 2618 2770 68 31 3 chr4 106008452 106008804 -78279858 - L1PA13 LINE L1 -2 6161 5800 977 211 64 64 chr4 106008804 106008860 -78279802 - Charlie2 DNA MER1_type -244 2618 2563 1500 185 3 70 chr4 106008860 106009189 -78279473 - AluJo SINE Alu 0 312 6 977 211 64 64 chr4 106009189 106009279 -78279383 - Charlie2 DNA MER1_type -298 2564 2470 2324 92 0 22 chr4 106009303 106009617 -78279045 - AluSx SINE Alu -5 307 1 632 211 77 48 chr4 106009667 106009875 -78278787 - Charlie2b DNA MER1_type -2113 669 456 609 237 73 135 chr4 106009982 106010170 -78278492 - L2 LINE L2 -34 3279 3126 2409 56 0 7 chr4 106010170 106010472 -78278190 + AluY SINE Alu 2 301 -10 609 237 73 135 chr4 106010472 106010667 -78277995 - L2 LINE L2 -187 3126 2920 456 314 72 0 chr4 106010762 106010915 -78277747 + MER115 DNA AcHobo 1 164 -529 296 331 27 27 chr4 106011281 106011465 -78277197 - MER5A DNA MER1_type 0 189 6 403 298 63 34 chr4 106011482 106011699 -78276963 + MIR SINE MIR 26 247 -15 2608 50 0 0 chr4 106012473 106012773 -78275889 - AluY SINE Alu -11 300 1 513 312 161 0 chr4 106013955 106014160 -78274502 + MIR SINE MIR 19 256 -6 208 153 17 136 chr4 106014548 106014607 -78274055 - L2 LINE L2 -4 3268 3217 192 40 0 0 chr4 106014921 106014946 -78273716 + (TG)n Simple_repeat Simple_repeat 1 25 0 185 259 65 46 chr4 106015055 106015163 -78273499 + L2 LINE L2 2188 2297 -1017 2150 111 0 0 chr4 106015569 106015866 -78272796 + AluSc SINE Alu 5 301 -8 205 281 7 93 chr4 106015890 106016029 -78272633 + L2 LINE L2 2558 2684 -630 194 287 116 8 chr4 106016199 106016328 -78272334 + L2 LINE L2 2917 3059 -213 2144 114 3 20 chr4 106016342 106016648 -78272014 - AluSx SINE Alu -11 301 1 200 262 119 71 chr4 106016752 106016878 -78271784 + L2 LINE L2 3182 3313 0 1834 149 24 0 chr4 106016920 106017215 -78271447 - AluSq SINE Alu -11 302 1 329 203 51 0 chr4 106017626 106017705 -78270957 - L2 LINE L2 0 3272 3190 395 274 98 46 chr4 106017932 106018156 -78270506 - L1ME4a LINE L1 -2 6119 5867 1999 142 0 14 chr4 106018156 106018451 -78270211 + AluJb SINE Alu 1 291 -21 395 274 98 46 chr4 106018451 106018594 -78270068 - L1ME4a LINE L1 -254 5867 5733 524 200 10 10 chr4 106018661 106018761 -78269901 - MLT2F LTR ERVL -563 100 1 2254 112 3 0 chr4 106018819 106019115 -78269547 - AluSx SINE Alu -15 297 1 2236 106 0 29 chr4 106019123 106019434 -78269228 - AluSp SINE Alu -11 302 1 2569 235 20 2 chr4 106019699 106020244 -78268418 - ERVL-F LTR ERVL -331 5433 4879 8510 245 90 33 chr4 106020326 106022779 -78265883 - ERVL-F LTR ERVL -1016 4748 2156 1888 125 34 14 chr4 106022915 106023236 -78265426 - AluSq SINE Alu 0 313 1 45 34 0 0 chr4 106024199 106024258 -78264404 + AT_rich Low_complexity Low_complexity 1 59 0 344 294 71 0 chr4 106024438 106024564 -78264098 + MIR SINE MIR 120 254 -8 644 306 87 33 chr4 106025291 106025624 -78263038 - L2 LINE L2 -704 2610 2260 24 67 0 0 chr4 106027622 106027667 -78260995 + AT_rich Low_complexity Low_complexity 1 45 0 914 65 0 0 chr4 106027682 106027789 -78260873 + U6 snRNA snRNA 1 107 0 346 259 107 0 chr4 106028127 106028239 -78260423 - L2 LINE L2 -10 3303 3180 2014 131 3 3 chr4 106028289 106028587 -78260075 + AluJb SINE Alu 1 298 -14 918 136 0 94 chr4 106028591 106028782 -78259880 + AluJb SINE Alu 130 302 -10 783 284 140 91 chr4 106028948 106030260 -78258402 - L2 LINE L2 -656 2658 1282 2210 98 3 7 chr4 106030716 106031011 -78257651 + AluSx SINE Alu 1 294 -18 599 250 26 0 chr4 106031498 106031650 -78257012 + MER58B DNA MER1_type 175 330 -11 1890 84 130 0 chr4 106032363 106032624 -78256038 + AluY SINE Alu 1 295 -6 603 205 16 33 chr4 106032722 106032844 -78255818 + L2 LINE L2 3194 3313 0 2267 121 0 3 chr4 106033460 106033774 -78254888 - AluSq SINE Alu 0 313 1 309 51 0 0 chr4 106033968 106034007 -78254655 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr4 106034234 106034262 -78254400 + AT_rich Low_complexity Low_complexity 1 28 0 2083 86 9 98 chr4 106034520 106034858 -78253804 - AluSq SINE Alu -5 308 1 2155 86 0 4 chr4 106035081 106035378 -78253284 + AluY SINE Alu 14 309 0 2170 132 0 3 chr4 106036516 106036826 -78251836 + AluSx SINE Alu 1 309 -3 2284 106 6 3 chr4 106037168 106037479 -78251183 - AluSx SINE Alu 0 312 1 21 0 0 0 chr4 106037491 106037512 -78251150 + AT_rich Low_complexity Low_complexity 1 21 0 402 275 47 19 chr4 106038503 106038657 -78250005 + MIR SINE MIR 35 192 -62 2173 99 27 0 chr4 106038790 106039083 -78249579 - AluY SINE Alu -10 301 1 360 329 43 23 chr4 106039143 106039341 -78249321 + MIR SINE MIR 20 215 -47 2258 102 0 7 chr4 106040166 106040469 -78248193 - AluSc SINE Alu -8 301 1 200 147 29 0 chr4 106040705 106040739 -78247923 - MIR SINE MIR -11 251 217 299 184 317 2 chr4 106040872 106041003 -78247659 - MIR SINE MIR -62 146 27 362 74 0 0 chr4 106041024 106041078 -78247584 - Alu SINE Alu 0 301 248 235 0 0 0 chr4 106041079 106041105 -78247557 - Alu SINE Alu -190 111 86 2054 129 7 0 chr4 106041105 106041442 -78247220 - AluSq SINE Alu 0 339 1 2404 83 0 3 chr4 106042012 106042314 -78246348 + AluSq SINE Alu 1 301 -12 2160 103 27 0 chr4 106042318 106042610 -78246052 + AluSq SINE Alu 2 301 -12 263 280 32 32 chr4 106043515 106043608 -78245054 + L3 LINE CR1 1399 1491 -86 1134 47 0 0 chr4 106043651 106043780 -78244882 + AluY SINE Alu 1 129 -182 406 302 107 53 chr4 106043993 106044218 -78244444 - L2 LINE L2 0 3313 3077 246 95 0 0 chr4 106044320 106044362 -78244300 + (T)n Simple_repeat Simple_repeat 1 42 0 27 0 0 0 chr4 106044588 106044615 -78244047 + AT_rich Low_complexity Low_complexity 1 27 0 276 284 25 25 chr4 106045538 106045619 -78243043 - L2 LINE L2 -44 3228 3148 1522 132 16 8 chr4 106046354 106046605 -78242057 - L1MA4 LINE L1 -1 6299 6047 1867 117 57 4 chr4 106046647 106046928 -78241734 - AluSx SINE Alu -16 296 1 1237 177 131 3 chr4 106047048 106047331 -78241331 + MER33 DNA MER1_type 5 323 -1 215 176 0 0 chr4 106047361 106047395 -78241267 - MER5A DNA MER1_type -39 150 117 666 170 9 0 chr4 106047490 106047596 -78241066 - MER5A DNA MER1_type -82 107 1 779 310 78 16 chr4 106047672 106048043 -78240619 + L1MEc LINE L1 1590 1983 -4413 26 30 0 0 chr4 106048055 106048088 -78240574 + AT_rich Low_complexity Low_complexity 1 33 0 1721 163 16 0 chr4 106048094 106048352 -78240310 - AluSx SINE Alu -27 285 24 1698 271 69 16 chr4 106048382 106049074 -78239588 + L1MEc LINE L1 2154 2842 -3373 1842 205 22 69 chr4 106049088 106049198 -78239464 + L1M4 LINE L1 4782 4896 -1250 2198 103 27 0 chr4 106049198 106049490 -78239172 - AluSx SINE Alu -11 301 2 1842 205 22 69 chr4 106049490 106049886 -78238776 + L1M4 LINE L1 4896 5264 -882 27 49 0 0 chr4 106049983 106050024 -78238638 + AT_rich Low_complexity Low_complexity 1 41 0 634 91 0 36 chr4 106050217 106050327 -78238335 + (GGAA)n Simple_repeat Simple_repeat 2 107 0 29 0 0 0 chr4 106050448 106050477 -78238185 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 106051171 106051199 -78237463 + AT_rich Low_complexity Low_complexity 1 28 0 1873 136 93 12 chr4 106051199 106051253 -78237409 - L1MA8 LINE L1 -8 6283 6235 189 0 0 0 chr4 106051253 106051274 -78237388 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 315 0 0 0 chr4 106051273 106051308 -78237354 + (CA)n Simple_repeat Simple_repeat 2 36 0 1873 136 93 12 chr4 106051274 106051585 -78237077 - L1MA8 LINE L1 -56 6235 5925 337 159 80 116 chr4 106051586 106051667 -78236995 + L1MA10 LINE L1 6202 6278 -56 1713 163 0 17 chr4 106051667 106051968 -78236694 - AluJb SINE Alu -16 296 1 337 159 80 116 chr4 106051968 106052024 -78236638 + L1MA10 LINE L1 6278 6334 0 2325 75 3 31 chr4 106052031 106052351 -78236311 - AluY SINE Alu 0 311 1 416 334 169 18 chr4 106052578 106052916 -78235746 - L3 LINE CR1 -106 1471 1083 640 225 62 0 chr4 106053007 106053167 -78235495 + MIR SINE MIR 49 218 -44 638 206 69 83 chr4 106054059 106054277 -78234385 + L1ME3A LINE L1 5948 6162 -8 272 327 10 19 chr4 106054536 106054640 -78234022 - MIR SINE MIR -21 241 139 228 154 0 0 chr4 106054650 106054702 -78233960 + (CA)n Simple_repeat Simple_repeat 1 52 0 1856 139 13 51 chr4 106054920 106055236 -78233426 - AluJo SINE Alu -8 304 1 2320 85 0 3 chr4 106055623 106055918 -78232744 + AluSx SINE Alu 1 294 -18 361 259 78 39 chr4 106055997 106056279 -78232383 - L1M4 LINE L1 -3703 2443 2151 2150 166 16 22 chr4 106056292 106056660 -78232002 - MER47A DNA MER2_type 0 366 1 660 305 131 39 chr4 106056787 106057332 -78231330 + MLT1G1 LTR MaLR 3 553 -2 2543 44 7 0 chr4 106057441 106057738 -78230924 + AluY SINE Alu 1 299 -12 2358 93 0 3 chr4 106058091 106058393 -78230269 - AluSx SINE Alu -11 301 1 213 39 0 0 chr4 106058396 106058422 -78230240 + (T)n Simple_repeat Simple_repeat 1 26 0 187 292 227 16 chr4 106058662 106058847 -78229815 - MIR SINE MIR -25 237 14 266 261 11 45 chr4 106059048 106059136 -78229526 + MIR3 SINE MIR 123 207 -1 235 116 0 70 chr4 106059276 106059319 -78229343 - L2 LINE L2 -20 3293 3254 210 330 85 21 chr4 106059404 106059498 -78229164 + L3 LINE CR1 1473 1572 -5 33 43 0 0 chr4 106059678 106059725 -78228937 + AT_rich Low_complexity Low_complexity 1 47 0 2326 87 13 0 chr4 106060323 106060632 -78228030 - AluSq SINE Alu 0 313 1 838 226 101 0 chr4 106060971 106061188 -78227474 - MIR SINE MIR -10 252 14 23 33 0 0 chr4 106061230 106061260 -78227402 + AT_rich Low_complexity Low_complexity 1 30 0 2079 112 4 0 chr4 106061444 106061743 -78226919 - AluSx SINE Alu 0 304 5 25 0 0 0 chr4 106061743 106061768 -78226894 + AT_rich Low_complexity Low_complexity 1 25 0 831 244 207 13 chr4 106062560 106063026 -78225636 + L2 LINE L2 2722 3305 -8 2357 76 0 3 chr4 106063182 106063472 -78225190 - AluSc SINE Alu -20 289 1 2108 237 29 11 chr4 106064382 106064838 -78223824 - LTR40c LTR ERVL 0 465 2 360 0 0 0 chr4 106065614 106065654 -78223008 + (TC)n Simple_repeat Simple_repeat 1 40 0 241 248 159 44 chr4 106065706 106065819 -78222843 + L2 LINE L2 3138 3263 -9 469 256 49 56 chr4 106065844 106066110 -78222552 - L1MC5 LINE L1 -30 7931 7668 388 324 58 6 chr4 106066856 106067029 -78221633 + MIR SINE MIR 8 189 -73 326 304 52 9 chr4 106067027 106067142 -78221520 - L2 LINE L2 0 3313 3194 * 248 185 15 0 chr4 106067143 106067208 -78221454 + L1MC4 LINE L1 6638 6703 -1339 228 196 0 0 chr4 106067216 106067262 -78221400 - LTR66 LTR ERVL -171 439 394 228 196 0 0 chr4 106067222 106067268 -78221394 + LTR66 LTR ERVL 394 439 -171 207 233 29 0 chr4 106067268 106067371 -78221291 + (TA)n Simple_repeat Simple_repeat 2 107 0 329 239 34 11 chr4 106067371 106067459 -78221203 + L1MC4 LINE L1 6614 6703 -1339 459 174 26 0 chr4 106067472 106067587 -78221075 + (TA)n Simple_repeat Simple_repeat 2 119 0 193 149 179 0 chr4 106067587 106067654 -78221008 + L2 LINE L2 3087 3165 -148 239 235 34 0 chr4 106067660 106067779 -78220883 + (TA)n Simple_repeat Simple_repeat 1 123 0 350 294 103 22 chr4 106069749 106069885 -78218777 + L2 LINE L2 3124 3270 -2 1379 273 56 27 chr4 106070363 106070947 -78217715 - L2 LINE L2 0 3313 2747 203 61 30 0 chr4 106070947 106070980 -78217682 + (TA)n Simple_repeat Simple_repeat 2 35 0 2245 110 3 7 chr4 106070980 106071280 -78217382 - AluSx SINE Alu -13 299 1 1379 273 56 27 chr4 106071280 106071434 -78217228 - L2 LINE L2 -565 2748 2549 2223 261 132 10 chr4 106071440 106072160 -78216502 - L2 LINE L2 -1215 2099 1292 254 298 61 9 chr4 106072188 106072302 -78216360 + L3 LINE CR1 1433 1552 -25 194 232 63 95 chr4 106072666 106072761 -78215901 - MIR SINE MIR -65 197 106 2312 111 7 0 chr4 106073292 106073599 -78215063 + AluSq SINE Alu 1 309 -4 660 260 12 6 chr4 106073664 106073837 -78214825 - MIR SINE MIR -3 259 86 184 225 0 0 chr4 106073905 106073945 -78214717 + L2 LINE L2 3273 3312 -1 308 306 185 23 chr4 106074602 106074820 -78213842 - MIR SINE MIR 0 262 3 288 0 0 0 chr4 106075233 106075265 -78213397 + (TG)n Simple_repeat Simple_repeat 2 33 0 462 297 16 16 chr4 106075378 106075506 -78213156 + L2 LINE L2 3186 3313 0 231 208 0 0 chr4 106075878 106075926 -78212736 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 225 264 0 19 chr4 106076841 106076875 -78211787 + CT-rich Low_complexity Low_complexity 5 39 -17 2342 109 0 3 chr4 106076875 106077188 -78211474 - AluSx SINE Alu 0 312 1 225 264 0 19 chr4 106077188 106077206 -78211456 + CT-rich Low_complexity Low_complexity 39 56 0 390 307 56 34 chr4 106077267 106077446 -78211216 + MER5A DNA MER1_type 7 189 0 357 263 211 0 chr4 106077464 106077616 -78211046 + MIR SINE MIR 65 248 -14 760 164 38 50 chr4 106077720 106077879 -78210783 + MER5B DNA MER1_type 1 157 -21 964 126 0 0 chr4 106078342 106078469 -78210193 + FLAM_C SINE Alu 1 127 -16 189 0 0 0 chr4 106078469 106078490 -78210172 + (CA)n Simple_repeat Simple_repeat 2 22 0 507 286 60 22 chr4 106079262 106079444 -78209218 + MIR SINE MIR 74 262 0 1383 126 9 19 chr4 106080052 106080266 -78208396 - MER44D DNA MER2_type 0 609 398 507 100 0 0 chr4 106080264 106080334 -78208328 + MER41B LTR ERV1 480 549 -86 * 342 89 0 0 chr4 106080354 106080399 -78208263 - MER44D DNA MER2_type -193 416 372 1075 167 6 0 chr4 106080423 106080591 -78208071 + AluSq SINE Alu 1 169 -144 893 125 8 0 chr4 106080591 106080719 -78207943 + THE1C LTR MaLR 1 129 -246 358 160 213 0 chr4 106080734 106080809 -78207853 - MER44D DNA MER2_type -248 361 1 23 0 0 0 chr4 106080991 106081014 -78207648 + AT_rich Low_complexity Low_complexity 1 23 0 1279 275 103 4 chr4 106081198 106081721 -78206941 + L1M4 LINE L1 4541 5115 -1031 211 328 31 0 chr4 106083205 106083269 -78205393 + MIR SINE MIR 81 146 -116 2323 93 6 13 chr4 106083375 106083688 -78204974 - AluSp SINE Alu -2 311 1 4314 70 7 6 chr4 106084156 106084697 -78203965 + L1PA7 LINE L1 5611 6152 -2 21 0 0 0 chr4 106084698 106084719 -78203943 + AT_rich Low_complexity Low_complexity 1 21 0 11898 94 15 14 chr4 106085700 106087398 -78201264 + HERVH LTR ERV1 725 2423 -5290 4950 92 1 10 chr4 106087394 106088103 -78200559 + HERVH LTR ERV1 2283 2985 -4728 * 848 163 20 0 chr4 106088100 106088247 -78200415 + HERVH LTR ERV1 3141 3290 -4423 * 3517 95 4 4 chr4 106088246 106088740 -78199922 + HERVH LTR ERV1 3500 3993 -3720 4480 139 0 3 chr4 106088742 106089406 -78199256 + HERVH LTR ERV1 4488 5149 -2564 1483 106 18 5 chr4 106089407 106089624 -78199038 + HERVH LTR ERV1 5600 5819 -1894 * 2367 103 48 13 chr4 106089622 106090001 -78198661 + HERVH LTR ERV1 7322 7713 0 2854 70 119 5 chr4 106090001 106090403 -78198259 + LTR7 LTR ERV1 1 448 -2 982 201 27 0 chr4 106090910 106091094 -78197568 + MLT1D LTR MaLR 1 189 -316 567 127 54 195 chr4 106091847 106092052 -78196610 - MER69 DNA AcHobo -1 2525 1 2042 135 0 0 chr4 106092341 106092623 -78196039 + AluSx SINE Alu 1 282 -30 840 63 0 0 chr4 106092623 106092734 -78195928 + (CATATA)n Simple_repeat Simple_repeat 3 113 0 504 301 109 46 chr4 106092895 106093224 -78195438 + LTR16C LTR ERVL 142 491 0 2260 110 0 3 chr4 106094114 106094413 -78194249 + AluSx SINE Alu 1 298 -14 1080 133 0 56 chr4 106094413 106094593 -78194069 + AluSg/x SINE Alu 132 301 -9 1667 214 53 14 chr4 106094901 106095261 -78193401 + MLT1A2 LTR MaLR 1 374 0 336 303 154 19 chr4 106096204 106096366 -78192296 + MER5A DNA MER1_type 1 184 -5 2895 157 27 51 chr4 106096899 106097870 -78190792 + LOR1-int LTR ERV1 8 2094 -5443 693 128 6 54 chr4 106097838 106097990 -78190672 + LOR1-int LTR ERV1 841 1616 -3264 * 512 152 10 10 chr4 106097991 106098090 -78190572 + LOR1-int LTR ERV1 1299 1397 -4934 2775 192 40 42 chr4 106098213 106098829 -78189833 + LOR1-int LTR ERV1 1386 2002 -4329 712 212 0 44 chr4 106098829 106098966 -78189696 - FLAM_C SINE Alu 0 133 3 480 156 22 89 chr4 106098984 106099119 -78189543 + LOR1-int LTR ERV1 3455 3580 -2751 26 30 0 0 chr4 106099119 106099152 -78189510 + AT_rich Low_complexity Low_complexity 1 33 0 330 178 24 101 chr4 106099260 106099429 -78189233 + LOR1-int LTR ERV1 2818 2973 -1907 3033 174 39 105 chr4 106099448 106100564 -78188098 + LOR1-int LTR ERV1 3613 4844 -1244 1872 130 3 52 chr4 106100564 106100871 -78187791 - AluSg SINE Alu -18 292 1 5473 163 43 38 chr4 106100871 106101560 -78187102 - MER50-int LTR ERV1 -2899 4306 3609 2530 40 17 10 chr4 106101560 106101861 -78186801 + AluY SINE Alu 1 303 -8 5473 163 43 38 chr4 106101861 106102216 -78186446 - MER50-int LTR ERV1 -3596 3609 3257 405 270 85 28 chr4 106102414 106102625 -78186037 - HAL1 LINE L1 -857 1650 1428 2074 141 3 0 chr4 106102774 106103072 -78185590 - AluSx SINE Alu -11 301 3 704 273 28 11 chr4 106103157 106103333 -78185329 + MER5A DNA MER1_type 2 180 -9 2384 81 0 7 chr4 106103333 106103631 -78185031 + AluY SINE Alu 1 296 -15 2303 113 0 0 chr4 106103649 106103958 -78184704 + AluSx SINE Alu 1 309 -3 1969 134 14 0 chr4 106103966 106104242 -78184420 + AluSx SINE Alu 11 290 -22 692 219 10 92 chr4 106104399 106104470 -78184192 + MER5A DNA MER1_type 9 84 -105 2219 124 0 16 chr4 106104470 106104785 -78183877 + AluSx SINE Alu 3 312 0 692 219 10 92 chr4 106104785 106104909 -78183753 + MER5A DNA MER1_type 84 188 -1 2231 108 0 0 chr4 106104909 106105205 -78183457 + AluSq SINE Alu 2 297 -16 501 201 75 38 chr4 106106063 106106269 -78182393 - MIR SINE MIR -16 246 38 700 238 93 26 chr4 106106659 106106986 -78181676 + LTR16A1 LTR ERVL 8 457 0 572 214 43 0 chr4 106107075 106107215 -78181447 - L1M4 LINE L1 -3222 2924 2779 1001 240 43 38 chr4 106107371 106107828 -78180834 - MLT2F LTR ERVL -158 505 1 613 218 10 84 chr4 106107828 106108030 -78180632 - ERVL-F LTR ERVL -8 5756 5570 * 713 246 6 12 chr4 106108024 106108195 -78180467 - ERVL-F LTR ERVL -639 5125 4956 188 65 0 32 chr4 106108195 106108226 -78180436 + (TTTCC)n Simple_repeat Simple_repeat 5 34 0 1858 118 0 8 chr4 106108240 106108503 -78180159 - AluSq SINE Alu -4 309 49 238 143 0 0 chr4 106109600 106109635 -78179027 - MADE1 DNA Mariner -44 36 2 301 279 55 60 chr4 106109732 106109915 -78178747 + L1MCa LINE L1 2126 2307 -4119 428 246 84 60 chr4 106109920 106110150 -78178512 + L1MCa LINE L1 2327 2519 -3907 2292 92 3 0 chr4 106110150 106110445 -78178217 + AluSg SINE Alu 1 296 -14 428 246 84 60 chr4 106110445 106110498 -78178164 + L1MCa LINE L1 2519 2569 -3857 945 236 107 14 chr4 106110518 106110874 -78177788 + L1MCa LINE L1 2715 3103 -3323 805 294 112 3 chr4 106110871 106111218 -78177444 + L1MCa LINE L1 3760 4144 -2282 * 1020 231 101 25 chr4 106111211 106111566 -78177096 + L1MC4 LINE L1 7445 7826 -216 800 168 8 0 chr4 106111660 106111779 -78176883 - FLAM_C SINE Alu -20 123 4 356 185 99 128 chr4 106111789 106111893 -78176769 + L1MC4 LINE L1 7838 7935 -107 282 116 0 0 chr4 106111893 106111936 -78176726 + (TG)n Simple_repeat Simple_repeat 2 44 0 356 185 99 128 chr4 106111936 106112042 -78176620 + L1MC4 LINE L1 7935 8042 0 1571 122 0 0 chr4 106112363 106112584 -78176078 + AluSq SINE Alu 86 306 -7 236 286 38 0 chr4 106112588 106112693 -78175969 + L1MCa LINE L1 4610 4718 -1708 2127 284 38 54 chr4 106112969 106113036 -78175626 + HERV16 LTR ERVL 2068 2135 -2861 2500 184 10 0 chr4 106113036 106113450 -78175212 + MER47B DNA MER2_type 1 418 0 2127 284 38 54 chr4 106113450 106114192 -78174470 + HERV16 LTR ERVL 2135 2864 -2132 1728 305 43 11 chr4 106114228 106114848 -78173814 + HERV16 LTR ERVL 3724 4363 -1291 566 306 92 31 chr4 106114843 106115203 -78173459 + HERV16 LTR ERVL 4473 4854 -910 * 2297 107 0 3 chr4 106116337 106116645 -78172017 + AluSx SINE Alu 1 307 -5 252 0 0 0 chr4 106116834 106116862 -78171800 + (TG)n Simple_repeat Simple_repeat 1 28 0 195 129 0 0 chr4 106116862 106116893 -78171769 + (CG)n Simple_repeat Simple_repeat 2 32 0 1834 136 32 11 chr4 106116990 106117270 -78171392 + AluJb SINE Alu 1 286 -26 190 240 219 31 chr4 106117282 106117378 -78171284 - MIR3 SINE MIR -91 117 4 2388 94 0 0 chr4 106119538 106119837 -78168825 + AluSg SINE Alu 1 299 -11 340 329 140 6 chr4 106120443 106120607 -78168055 + MIR3 SINE MIR 23 208 0 2335 37 4 4 chr4 106120624 106120897 -78167765 + AluY SINE Alu 39 311 0 289 305 11 11 chr4 106121034 106121129 -78167533 + MIR SINE MIR 118 212 -50 22 35 0 0 chr4 106125416 106125445 -78163217 + AT_rich Low_complexity Low_complexity 1 29 0 239 344 106 84 chr4 106126706 106126839 -78161823 - L2 LINE L2 -422 2892 2763 2429 96 0 0 chr4 106126839 106127151 -78161511 + AluSx SINE Alu 1 312 0 239 344 106 84 chr4 106127151 106127301 -78161361 - L2 LINE L2 -551 2763 2599 1724 162 26 0 chr4 106127301 106127572 -78161090 + AluJb SINE Alu 1 278 -34 239 344 106 84 chr4 106127572 106127607 -78161055 - L2 LINE L2 -715 2599 2566 379 324 27 14 chr4 106127664 106127812 -78160850 - MER5B DNA MER1_type 0 178 29 537 248 92 7 chr4 106128449 106128590 -78160072 + MIR SINE MIR 3 155 -107 1264 185 9 5 chr4 106128590 106128806 -78159856 - MLT1B LTR MaLR 0 390 174 1445 69 0 0 chr4 106128806 106128981 -78159681 - AluSp SINE Alu -1 312 138 804 156 66 18 chr4 106128983 106129150 -78159512 - MLT1B LTR MaLR -213 177 3 282 283 185 0 chr4 106129152 106129244 -78159418 + MIR SINE MIR 151 259 -3 1807 163 0 44 chr4 106129248 106129568 -78159094 + AluJb SINE Alu 5 310 -2 499 248 85 35 chr4 106129587 106129728 -78158934 - L2 LINE L2 0 3272 3125 894 179 86 0 chr4 106129799 106129961 -78158701 - MER58B DNA MER1_type 0 341 166 31 26 0 0 chr4 106130129 106130167 -78158495 + AT_rich Low_complexity Low_complexity 1 38 0 447 253 70 48 chr4 106131415 106131601 -78157061 + MIR SINE MIR 59 248 -14 22 0 0 0 chr4 106133059 106133081 -78155581 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr4 106133726 106133771 -78154891 + AT_rich Low_complexity Low_complexity 1 45 0 879 167 0 0 chr4 106134799 106134931 -78153731 + FLAM_C SINE Alu 1 132 -1 2134 111 13 0 chr4 106135102 106135400 -78153262 + AluSp SINE Alu 1 302 -11 1444 79 0 3 chr4 106135514 106135756 -78152906 + AluYa5 SINE Alu 2 305 -6 231 114 0 0 chr4 106136311 106136346 -78152316 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 709 278 61 9 chr4 106136971 106137183 -78151479 - MIR SINE MIR 0 262 40 21 0 0 0 chr4 106137536 106137557 -78151105 + AT_rich Low_complexity Low_complexity 1 21 0 205 175 0 48 chr4 106139452 106139487 -78149175 + A-rich Low_complexity Low_complexity 1 33 -27 2169 122 3 0 chr4 106139487 106139790 -78148872 + AluSg SINE Alu 1 304 -6 205 175 0 48 chr4 106139790 106139817 -78148845 + A-rich Low_complexity Low_complexity 33 60 0 2264 116 0 0 chr4 106139821 106140123 -78148539 + AluSx SINE Alu 1 302 -10 302 0 26 0 chr4 106141297 106141335 -78147327 + (TA)n Simple_repeat Simple_repeat 1 39 0 22 35 0 0 chr4 106141385 106141414 -78147248 + AT_rich Low_complexity Low_complexity 1 29 0 846 161 0 15 chr4 106141530 106141667 -78146995 - FLAM_C SINE Alu -8 135 1 312 224 106 0 chr4 106141668 106141753 -78146909 + L1ME4a LINE L1 5987 6080 -41 1311 147 0 5 chr4 106141814 106142011 -78146651 - AluSg/x SINE Alu -30 282 87 1124 62 0 0 chr4 106143000 106143130 -78145532 + L1PA8 LINE L1 6030 6159 -13 1698 155 7 27 chr4 106143783 106144080 -78144582 - AluJo SINE Alu -21 291 1 2779 79 21 26 chr4 106144177 106144558 -78144104 + MLT2A1 LTR ERVL 1 379 -65 276 30 0 0 chr4 106144563 106144596 -78144066 + (TG)n Simple_repeat Simple_repeat 1 33 0 185 60 15 90 chr4 106144603 106144670 -78143992 + (TA)n Simple_repeat Simple_repeat 2 63 0 381 101 0 7 chr4 106144674 106144734 -78143928 + MLT2A2 LTR ERVL 402 453 0 432 293 29 21 chr4 106145689 106145829 -78142833 + MIR3 SINE MIR 16 156 -52 2046 135 0 0 chr4 106147527 106147903 -78140759 + AluSx SINE Alu 1 376 0 2229 121 0 13 chr4 106148030 106148345 -78140317 - AluSx SINE Alu -1 311 1 24 32 0 0 chr4 106148497 106148528 -78140134 + AT_rich Low_complexity Low_complexity 1 31 0 287 280 56 70 chr4 106148531 106148674 -78139988 + MIR3 SINE MIR 67 207 -1 945 208 8 3 chr4 106149276 106149496 -78139166 + L1P LINE L1 4887 5114 -1032 2072 112 0 14 chr4 106149602 106149913 -78138749 + AluSx SINE Alu 1 307 0 1669 168 41 3 chr4 106150623 106150914 -78137748 + AluSx SINE Alu 2 303 -9 417 318 133 0 chr4 106151351 106151524 -78137138 - MIR SINE MIR -20 242 47 766 190 0 0 chr4 106151566 106151687 -78136975 + FLAM_C SINE Alu 9 129 -14 24 32 0 0 chr4 106151688 106151719 -78136943 + AT_rich Low_complexity Low_complexity 1 31 0 1080 133 0 7 chr4 106151724 106151875 -78136787 + AluJb SINE Alu 1 150 -162 255 149 21 0 chr4 106151897 106151944 -78136718 + AluS SINE Alu 10 57 -243 2197 80 52 0 chr4 106152066 106152352 -78136310 - AluSc SINE Alu -3 306 6 1473 113 0 31 chr4 106152458 106152680 -78135982 + AluSg/x SINE Alu 91 305 -5 254 286 163 10 chr4 106152890 106152988 -78135674 + MIR SINE MIR 33 145 -63 1731 176 0 0 chr4 106153010 106153289 -78135373 + AluJb SINE Alu 18 296 -16 2127 143 0 6 chr4 106153753 106154067 -78134595 + AluSx SINE Alu 1 312 0 2205 122 0 0 chr4 106154772 106155067 -78133595 + AluSx SINE Alu 1 295 -17 870 153 0 0 chr4 106155127 106155245 -78133417 + FLAM_C SINE Alu 1 118 -15 27 0 0 0 chr4 106155252 106155279 -78133383 + AT_rich Low_complexity Low_complexity 1 27 0 253 111 0 0 chr4 106155649 106155685 -78132977 + MER21A LTR ERV1 540 575 -356 27 81 0 0 chr4 106156174 106156236 -78132426 + AT_rich Low_complexity Low_complexity 1 62 0 428 85 0 0 chr4 106156236 106156295 -78132367 - MER41A LTR ERV1 -94 460 402 301 259 59 67 chr4 106156317 106156452 -78132210 + L2 LINE L2 3177 3310 -3 389 265 22 52 chr4 106156575 106156711 -78131951 - MIR SINE MIR -111 151 20 24 0 0 0 chr4 106157273 106157297 -78131365 + AT_rich Low_complexity Low_complexity 1 24 0 1799 171 0 16 chr4 106157322 106157632 -78131030 - AluJb SINE Alu -7 305 1 1846 91 0 91 chr4 106157641 106157926 -78130736 - AluSg SINE Alu -16 294 36 624 259 88 54 chr4 106158910 106159024 -78129638 + MIR SINE MIR 16 125 -137 1754 136 98 11 chr4 106159024 106159311 -78129351 + AluSx SINE Alu 1 312 0 624 259 88 54 chr4 106159311 106159386 -78129276 + MIR SINE MIR 125 217 -45 2283 199 88 99 chr4 106159386 106160121 -78128541 - LTR8A LTR ERV1 0 727 1 624 259 88 54 chr4 106160121 106160169 -78128493 + MIR SINE MIR 217 262 0 2384 54 0 17 chr4 106160421 106160717 -78127945 + AluY SINE Alu 3 293 -18 1619 167 34 0 chr4 106161023 106161286 -78127376 - AluJb SINE Alu -13 299 28 2002 134 0 0 chr4 106161300 106161614 -78127048 - AluSx SINE Alu 0 315 2 438 268 43 22 chr4 106161726 106161864 -78126798 + MIR SINE MIR 5 145 -117 261 289 72 21 chr4 106162206 106162303 -78126359 + MIR SINE MIR 26 127 -81 1933 137 7 14 chr4 106162759 106163052 -78125610 - AluJo SINE Alu -21 291 1 237 65 0 0 chr4 106163438 106163469 -78125193 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2123 104 0 37 chr4 106163469 106163767 -78124895 - AluSp SINE Alu -26 287 1 2340 95 7 0 chr4 106164164 106164470 -78124192 - AluSx SINE Alu -3 309 2 2395 88 3 0 chr4 106164641 106164938 -78123724 - AluSp SINE Alu -15 298 1 39 22 0 0 chr4 106165034 106165080 -78123582 + AT_rich Low_complexity Low_complexity 1 46 0 2215 106 3 0 chr4 106165289 106165591 -78123071 - AluSx SINE Alu -9 303 1 21 36 0 0 chr4 106166478 106166506 -78122156 + AT_rich Low_complexity Low_complexity 1 28 0 2201 129 0 0 chr4 106166758 106167052 -78121610 + AluSx SINE Alu 5 298 -14 1793 180 12 111 chr4 106167086 106167416 -78121246 + L1 LINE L1 4727 4989 -1157 1684 185 17 7 chr4 106167416 106167713 -78120949 + AluJo SINE Alu 1 300 -12 1793 180 12 111 chr4 106167713 106167898 -78120764 + L1 LINE L1 4989 5191 -955 21 0 0 0 chr4 106167929 106167950 -78120712 + AT_rich Low_complexity Low_complexity 1 21 0 1718 106 118 4 chr4 106167960 106168215 -78120447 + AluSg SINE Alu 5 288 -22 2266 104 0 3 chr4 106170427 106170724 -78117938 - AluSq SINE Alu -16 297 2 1593 149 74 41 chr4 106171867 106172230 -78116432 + L1MA6 LINE L1 5926 6300 0 2238 120 3 0 chr4 106172261 106172569 -78116093 - AluSx SINE Alu -3 309 1 2052 132 3 7 chr4 106172935 106173231 -78115431 - AluSg SINE Alu -15 295 1 1048 177 50 51 chr4 106173246 106173521 -78115141 + MLT1B LTR MaLR 3 255 -119 2099 134 0 20 chr4 106173550 106173856 -78114806 - AluSx SINE Alu -11 301 2 1798 166 0 10 chr4 106174576 106174865 -78113797 - AluJo SINE Alu -12 300 15 204 200 36 0 chr4 106174969 106175024 -78113638 + (TA)n Simple_repeat Simple_repeat 1 57 0 734 277 58 0 chr4 106175565 106175771 -78112891 + MIR SINE MIR 45 262 0 2466 50 3 0 chr4 106176832 106177129 -78111533 - AluY SINE Alu -13 298 1 487 289 12 40 chr4 106177223 106177396 -78111266 - MIR SINE MIR 0 262 95 2265 111 3 0 chr4 106177514 106177820 -78110842 + AluSx SINE Alu 1 307 -5 285 316 80 28 chr4 106178074 106178245 -78110417 + MIR SINE MIR 18 198 -64 208 250 21 0 chr4 106178321 106178369 -78110293 - L3 LINE CR1 -1 1576 1528 306 317 122 0 chr4 106178375 106178540 -78110122 + MIR SINE MIR 3 190 -67 2250 111 7 3 chr4 106178716 106179022 -78109640 + AluSq SINE Alu 1 307 -6 22 0 0 0 chr4 106179080 106179102 -78109560 + AT_rich Low_complexity Low_complexity 1 22 0 2186 193 30 44 chr4 106179260 106179762 -78108900 + MLT1D LTR MaLR 1 495 -10 2272 116 0 0 chr4 106179794 106180104 -78108558 - AluSg SINE Alu 0 310 1 2162 98 0 26 chr4 106180787 106181092 -78107570 - AluSq SINE Alu -16 297 1 2165 117 3 3 chr4 106181871 106182171 -78106491 - AluSq SINE Alu -13 300 1 2251 116 0 0 chr4 106182381 106182682 -78105980 - AluSg SINE Alu -9 301 1 21 0 0 0 chr4 106182830 106182851 -78105811 + AT_rich Low_complexity Low_complexity 1 21 0 289 317 267 22 chr4 106182863 106183043 -78105619 - L2 LINE L2 -39 3233 3010 232 56 0 0 chr4 106183068 106183104 -78105558 - AluSx SINE Alu 0 308 273 1766 77 0 0 chr4 106183114 106183334 -78105328 - AluSx SINE Alu -92 220 1 518 292 183 50 chr4 106183525 106184066 -78104596 - L2 LINE L2 -445 2869 2257 1307 333 122 33 chr4 106184121 106185576 -78103086 - L2 LINE L2 -1429 1885 301 2434 93 0 0 chr4 106185632 106185943 -78102719 + AluY SINE Alu 1 311 0 973 214 11 0 chr4 106185965 106186147 -78102515 + MER5A DNA MER1_type 1 184 -5 242 357 101 8 chr4 106187013 106187142 -78101520 - L2 LINE L2 -465 2849 2709 2505 139 35 37 chr4 106187182 106187615 -78101047 + MSTB1 LTR MaLR 1 432 0 2127 107 28 0 chr4 106187713 106188003 -78100659 + AluSg SINE Alu 1 298 -12 2021 132 0 3 chr4 106188008 106188295 -78100367 + AluSx SINE Alu 1 286 -26 258 155 23 23 chr4 106188295 106188424 -78100238 + (TA)n Simple_repeat Simple_repeat 2 130 0 1826 167 10 13 chr4 106188670 106188982 -78099680 - AluJb SINE Alu 0 312 2 447 296 154 72 chr4 106189128 106189779 -78098883 - L2 LINE L2 -670 2644 1941 397 231 11 0 chr4 106189780 106189871 -78098791 + L1MA8 LINE L1 6196 6287 -4 189 94 0 0 chr4 106190002 106190034 -78098628 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1118 98 92 0 chr4 106190034 106190198 -78098464 - AluSg/x SINE Alu -32 280 102 1276 112 10 0 chr4 106190300 106190496 -78098166 + AluSg/x SINE Alu 112 309 -3 25 51 0 0 chr4 106191172 106191211 -78097451 + AT_rich Low_complexity Low_complexity 1 39 0 2472 77 0 0 chr4 106194727 106195026 -78093636 - AluSq SINE Alu -13 300 2 1621 191 0 30 chr4 106195110 106195409 -78093253 - AluJo SINE Alu -22 290 1 477 228 118 0 chr4 106195518 106195645 -78093017 + MIR SINE MIR 110 251 -11 195 171 40 40 chr4 106196089 106196165 -78092497 + GA-rich Low_complexity Low_complexity 5 80 0 559 304 91 15 chr4 106197129 106197359 -78091303 + MIR SINE MIR 25 262 0 2179 112 0 0 chr4 106198939 106199224 -78089438 + AluSx SINE Alu 1 285 -27 1694 178 25 3 chr4 106200218 106200504 -78088158 - AluJo SINE Alu -20 292 1 512 275 99 27 chr4 106200546 106200768 -78087894 + L2 LINE L2 3076 3313 0 2193 98 20 0 chr4 106200823 106201118 -78087544 - AluSx SINE Alu -11 301 1 294 273 40 20 chr4 106201807 106201906 -78086756 + L1M4 LINE L1 3975 4075 -2071 661 183 63 0 chr4 106201915 106202041 -78086621 + FLAM_C SINE Alu 4 137 -6 500 0 17 0 chr4 106202052 106202071 -78086591 + (TCTA)n Simple_repeat Simple_repeat 1 80 0 500 0 17 0 chr4 106202071 106202131 -78086531 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 475 248 40 0 chr4 106202434 106202559 -78086103 + MLT1L LTR MaLR 151 280 -335 280 243 126 10 chr4 106202691 106202794 -78085868 + MLT1L LTR MaLR 493 607 -8 37 0 0 0 chr4 106203866 106203903 -78084759 + AT_rich Low_complexity Low_complexity 1 37 0 249 259 19 0 chr4 106204009 106204063 -78084599 + L2 LINE L2 3216 3270 -2 230 295 179 9 chr4 106204141 106204253 -78084409 - L3b LINE CR1 -88 1495 1365 357 109 0 0 chr4 106204346 106204401 -78084261 + (GA)n Simple_repeat Simple_repeat 1 55 0 1721 93 132 16 chr4 106205399 106205688 -78082974 + AluSx SINE Alu 1 319 0 2124 119 10 0 chr4 106208242 106208536 -78080126 - AluSq SINE Alu -16 297 1 2447 78 3 0 chr4 106208546 106208854 -78079808 - AluY SINE Alu -2 309 1 635 190 0 2 chr4 106209099 106209348 -78079314 + AluJo SINE Alu 1 305 -7 2115 129 3 0 chr4 106209482 106209785 -78078877 + AluSx SINE Alu 1 304 -8 254 234 225 9 chr4 106211853 106211964 -78076698 + MER5A DNA MER1_type 55 189 0 560 299 27 11 chr4 106212270 106212457 -78076205 + MIR3 SINE MIR 18 207 -1 2453 82 0 0 chr4 106212645 106212948 -78075714 + AluSq SINE Alu 1 303 -10 246 209 233 0 chr4 106212977 106213063 -78075599 - MIR SINE MIR -73 135 30 376 320 189 0 chr4 106213497 106213672 -78074990 - MIR SINE MIR -8 254 47 2068 141 0 13 chr4 106215550 106215915 -78072747 + AluJb SINE Alu 3 363 0 297 90 60 30 chr4 106216427 106216494 -78072168 - L1MA5 LINE L1 -5 6295 6227 1512 166 79 4 chr4 106216566 106216865 -78071797 - AluJb SINE Alu 0 319 1 191 255 53 64 chr4 106219456 106219550 -78069112 - MIR SINE MIR -50 212 120 2278 107 0 0 chr4 106219591 106219891 -78068771 - AluSx SINE Alu -12 300 1 27 49 0 0 chr4 106219893 106219934 -78068728 + AT_rich Low_complexity Low_complexity 1 41 0 685 224 90 20 chr4 106220732 106220933 -78067729 + MER58C DNA MER1_type 1 215 0 202 349 272 9 chr4 106223251 106223483 -78065179 + L2 LINE L2 2980 3272 0 21 0 0 0 chr4 106225797 106225818 -78062844 + AT_rich Low_complexity Low_complexity 1 21 0 249 83 0 0 chr4 106226065 106226101 -78062561 + (TG)n Simple_repeat Simple_repeat 1 36 0 3861 52 2 0 chr4 106226223 106226700 -78061962 - L1PA7 LINE L1 -11 6143 5666 4267 76 13 0 chr4 106226700 106227575 -78061087 + L1PA7 LINE L1 4779 5660 -494 24 0 0 0 chr4 106227886 106227910 -78060752 + AT_rich Low_complexity Low_complexity 1 24 0 213 368 61 26 chr4 106229604 106229718 -78058944 - MIR3 SINE MIR -48 160 43 200 216 0 0 chr4 106231803 106231840 -78056822 - L2 LINE L2 -22 3250 3214 * 1061 255 0 12 chr4 106231807 106232050 -78056612 - MIR SINE MIR -20 242 3 1867 122 78 0 chr4 106232814 106233085 -78055577 - AluSx SINE Alu -20 292 1 307 252 31 47 chr4 106236184 106236260 -78052402 - MIR SINE MIR -14 248 173 3012 145 38 40 chr4 106236260 106236813 -78051849 + MLT2B3 LTR ERVL 1 552 -2 307 252 31 47 chr4 106236813 106236863 -78051799 - MIR SINE MIR -89 173 124 580 301 25 0 chr4 106237008 106237171 -78051491 + MIR SINE MIR 3 169 -93 202 406 31 26 chr4 106237233 106237425 -78051237 - L2 LINE L2 -84 3188 2996 654 222 49 12 chr4 106237469 106237631 -78051031 - MIR SINE MIR -33 229 62 607 204 86 19 chr4 106237669 106237831 -78050831 - L1ME LINE L1 -433 5688 5516 21 0 0 0 chr4 106238287 106238308 -78050354 + AT_rich Low_complexity Low_complexity 1 21 0 942 209 0 0 chr4 106238464 106238627 -78050035 - FAM SINE Alu -12 163 1 263 256 115 68 chr4 106238642 106238833 -78049829 + L2 LINE L2 3114 3313 0 2017 148 16 0 chr4 106238880 106239185 -78049477 - AluJb SINE Alu 0 312 3 691 177 24 12 chr4 106241163 106241389 -78047273 + GA-rich Low_complexity Low_complexity 1 407 -25 991 75 17 23 chr4 106241389 106241563 -78047099 + (GGAA)n Simple_repeat Simple_repeat 1 173 0 691 177 24 12 chr4 106241563 106241590 -78047072 + GA-rich Low_complexity Low_complexity 407 432 0 770 94 28 39 chr4 106241591 106241771 -78046891 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 306 0 0 0 chr4 106241885 106241919 -78046743 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 831 234 115 53 chr4 106241992 106242296 -78046366 + MER21B LTR ERV1 417 739 -124 21 0 0 0 chr4 106242541 106242562 -78046100 + AT_rich Low_complexity Low_complexity 1 21 0 2071 122 0 10 chr4 106242665 106242968 -78045694 + AluJb SINE Alu 1 300 -12 2483 44 13 3 chr4 106244012 106244310 -78044352 - AluY SINE Alu -10 301 1 707 220 43 0 chr4 106244671 106244812 -78043850 + Charlie1 DNA MER1_type 1 147 -2614 * 1645 126 87 145 chr4 106244805 106244827 -78043835 + Charlie1 DNA MER1_type 2207 2229 -532 2076 144 0 3 chr4 106244827 106245132 -78043530 + AluSx SINE Alu 1 304 -8 1645 126 87 145 chr4 106245132 106245576 -78043086 + Charlie1 DNA MER1_type 2229 2635 -126 1953 155 3 0 chr4 106245576 106245885 -78042777 - AluJo SINE Alu 0 312 3 1645 126 87 145 chr4 106245885 106246005 -78042657 + Charlie1 DNA MER1_type 2635 2760 -1 206 277 15 0 chr4 106246114 106246179 -78042483 + MIR SINE MIR 197 262 0 579 66 0 0 chr4 106246217 106246293 -78042369 + (TAG)n Simple_repeat Simple_repeat 1 76 0 7104 57 1 0 chr4 106247840 106248915 -78039747 + L1PA6 LINE L1 5076 6151 -3 296 280 21 11 chr4 106248948 106249041 -78039621 + GA-rich Low_complexity Low_complexity 3 96 0 211 176 39 0 chr4 106249111 106249162 -78039500 + T-rich Low_complexity Low_complexity 2 54 0 2289 102 3 0 chr4 106252372 106252676 -78035986 - AluSx SINE Alu -7 305 1 2063 124 0 0 chr4 106252721 106253038 -78035624 - AluSx SINE Alu 0 317 1 661 312 52 4 chr4 106253470 106253701 -78034961 - MIR SINE MIR 0 262 21 21 36 0 0 chr4 106255453 106255481 -78033181 + AT_rich Low_complexity Low_complexity 1 28 0 1711 137 74 11 chr4 106255968 106256253 -78032409 - AluSx SINE Alu -9 303 1 23 0 0 0 chr4 106256948 106256971 -78031691 + AT_rich Low_complexity Low_complexity 1 23 0 1080 115 224 0 chr4 106259275 106259372 -78029290 - MER30 DNA MER1_type -6 224 150 423 0 0 0 chr4 106259372 106259419 -78029243 + (TG)n Simple_repeat Simple_repeat 2 48 0 1080 115 224 0 chr4 106259419 106259504 -78029158 - MER30 DNA MER1_type -80 150 1 26 0 0 0 chr4 106259882 106259908 -78028754 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr4 106260947 106260975 -78027687 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr4 106262343 106262363 -78026299 + (T)n Simple_repeat Simple_repeat 1 20 0 215 341 211 0 chr4 106263942 106264065 -78024597 + L2 LINE L2 3123 3271 -1 310 231 9 74 chr4 106264497 106264605 -78024057 - MIR SINE MIR -66 196 96 372 267 30 76 chr4 106265374 106265505 -78023157 - L2 LINE L2 0 3313 3189 188 302 0 0 chr4 106266995 106267058 -78021604 - MIR SINE MIR 0 262 200 23 33 0 0 chr4 106267133 106267163 -78021499 + AT_rich Low_complexity Low_complexity 1 30 0 1488 172 130 0 chr4 106267339 106267624 -78021038 + MER58B DNA MER1_type 1 322 -19 921 185 108 5 chr4 106267810 106268005 -78020657 + MER20 DNA MER1_type 1 215 -4 1262 71 15 35 chr4 106268657 106268854 -78019808 - L1PB1 LINE L1 -7 6144 5952 2400 78 0 10 chr4 106268864 106269173 -78019489 - AluY SINE Alu -5 306 1 291 264 231 43 chr4 106270377 106270585 -78018077 + MIR SINE MIR 1 247 -15 282 241 0 0 chr4 106271906 106271993 -78016669 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 278 328 0 0 chr4 106272365 106272493 -78016169 + G-rich Low_complexity Low_complexity 1 128 0 24141 99 12 16 chr4 106272500 106276141 -78012521 + L1P LINE L1 390 4015 -2131 220 355 0 0 chr4 106278167 106278229 -78010433 + L2 LINE L2 3251 3312 -1 294 89 31 0 chr4 106278823 106278878 -78009784 - L1MC1 LINE L1 0 6344 6281 796 222 119 5 chr4 106279003 106279188 -78009474 - MIR SINE MIR -55 207 2 253 296 78 24 chr4 106280223 106280429 -78008233 - L1ME LINE L1 -347 5774 5558 186 275 14 58 chr4 106280985 106281054 -78007608 - L2 LINE L2 -79 3234 3169 1038 121 63 121 chr4 106281935 106282170 -78006492 + MER33 DNA MER1_type 1 214 -2371 722 35 0 0 chr4 106282170 106282299 -78006363 + L1PA2 LINE L1 6053 6181 0 1038 121 63 121 chr4 106282299 106282394 -78006268 + MER33 DNA MER1_type 214 313 -11 21 0 0 0 chr4 106282416 106282437 -78006225 + AT_rich Low_complexity Low_complexity 1 21 0 536 263 100 43 chr4 106282806 106283282 -78005380 + L2 LINE L2 2694 3196 -117 820 183 17 0 chr4 106283291 106283466 -78005196 + MER53 DNA DNA 12 189 0 396 281 23 39 chr4 106283492 106283620 -78005042 + L2 LINE L2 3147 3272 0 437 309 14 22 chr4 106284330 106284469 -78004193 - MIR SINE MIR -55 153 16 228 163 0 23 chr4 106284751 106284794 -78003868 + (TTG)n Simple_repeat Simple_repeat 1 42 0 2605 152 120 49 chr4 106285362 106286039 -78002623 - LTR8A LTR ERV1 -2 725 1 401 314 52 60 chr4 106286551 106286803 -78001859 - MER115 DNA AcHobo -235 458 209 602 265 101 16 chr4 106287186 106287375 -78001287 - MIR SINE MIR -57 205 1 * 840 289 18 4 chr4 106287375 106287599 -78001063 + MIR SINE MIR 35 261 -1 330 263 146 29 chr4 106288207 106288344 -78000318 + L2 LINE L2 3159 3311 -2 21 71 0 0 chr4 106289086 106289128 -77999534 + AT_rich Low_complexity Low_complexity 1 42 0 2104 91 34 10 chr4 106290008 106290306 -77998356 - AluSp SINE Alu -8 305 1 990 178 18 0 chr4 106291403 106291566 -77997096 - FRAM SINE Alu 0 166 1 186 189 0 0 chr4 106292089 106292126 -77996536 + CT-rich Low_complexity Low_complexity 3 39 0 681 188 8 0 chr4 106292131 106292248 -77996414 - AluJb SINE Alu -194 118 1 321 157 133 111 chr4 106292334 106292439 -77996223 - FLAM_A SINE Alu -4 129 30 606 241 38 6 chr4 106293763 106293921 -77994741 - MIR SINE MIR -34 228 66 2151 113 3 7 chr4 106296516 106296809 -77991853 - AluSx SINE Alu -20 292 1 21 0 0 0 chr4 106298395 106298416 -77990246 + AT_rich Low_complexity Low_complexity 1 21 0 297 333 101 41 chr4 106298612 106298930 -77989732 + L2 LINE L2 1354 1690 -1624 2115 142 0 0 chr4 106300090 106300393 -77988269 - AluJo SINE Alu -9 303 1 183 359 82 44 chr4 106301292 106301635 -77987027 + L2 LINE L2 2526 2881 -433 207 195 0 24 chr4 106301787 106301828 -77986834 + L2 LINE L2 3218 3257 -15 515 288 146 30 chr4 106301936 106302372 -77986290 - L2 LINE L2 -78 3235 2753 233 375 95 47 chr4 106303862 106304158 -77984504 + L2 LINE L2 2963 3272 0 711 223 69 45 chr4 106305110 106305252 -77983410 + MER3 DNA MER1_type 3 140 -69 396 55 0 0 chr4 106305252 106305307 -77983355 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 1606 151 14 55 chr4 106305309 106305600 -77983062 - AluJb SINE Alu -33 279 1 711 223 69 45 chr4 106305600 106305656 -77983006 + MER3 DNA MER1_type 140 209 0 386 280 127 32 chr4 106305667 106305824 -77982838 + MIR3 SINE MIR 23 194 -14 2094 103 4 4 chr4 106305869 106306175 -77982487 - AluSx SINE Alu 0 306 1 1566 166 71 17 chr4 106306311 106306607 -77982055 + AluJo SINE Alu 1 312 0 1560 289 39 54 chr4 106306958 106307627 -77981035 + MER115 DNA AcHobo 5 663 -30 309 331 88 15 chr4 106307997 106308133 -77980529 - MIR3 SINE MIR -6 202 57 255 31 0 0 chr4 106310598 106310630 -77978032 + (CA)n Simple_repeat Simple_repeat 1 32 0 4710 43 0 2 chr4 106310677 106311241 -77977421 + L1PA6 LINE L1 5584 6146 -8 374 247 139 42 chr4 106311647 106311813 -77976849 - MIR SINE MIR 0 262 81 1083 202 72 14 chr4 106311908 106312199 -77976463 + L1ME3A LINE L1 5832 6148 -22 2301 85 0 3 chr4 106313042 106313337 -77975325 + AluSc SINE Alu 5 298 -11 216 0 0 0 chr4 106313552 106313576 -77975086 + (TA)n Simple_repeat Simple_repeat 2 25 0 747 143 0 8 chr4 106313577 106313696 -77974966 - AluJb SINE Alu -194 118 1 812 249 0 6 chr4 106315183 106315352 -77973310 + FAM SINE Alu 1 168 -7 2097 77 0 4 chr4 106315360 106315620 -77973042 + AluY SINE Alu 35 293 -18 21 71 0 0 chr4 106316438 106316480 -77972182 + AT_rich Low_complexity Low_complexity 1 42 0 211 245 28 66 chr4 106317123 106317229 -77971433 + (CACCC)n Simple_repeat Simple_repeat 1 102 0 24 32 0 0 chr4 106317877 106317908 -77970754 + AT_rich Low_complexity Low_complexity 1 31 0 2207 112 0 20 chr4 106319195 106319499 -77969163 - AluSx SINE Alu -12 300 3 2207 112 3 3 chr4 106319501 106319805 -77968857 - AluSx SINE Alu -6 306 3 21 0 0 0 chr4 106321300 106321321 -77967341 + AT_rich Low_complexity Low_complexity 1 21 0 2245 101 3 3 chr4 106322410 106322716 -77965946 - AluSx SINE Alu -6 306 1 206 373 15 0 chr4 106323116 106323183 -77965479 - MIR SINE MIR -104 104 37 400 311 52 93 chr4 106323283 106323531 -77965131 - L2 LINE L2 -8 3264 3027 289 305 190 37 chr4 106323537 106323913 -77964749 - L2 LINE L2 -646 2668 2182 2393 100 6 0 chr4 106323913 106324224 -77964438 + AluSq SINE Alu 1 313 0 289 305 190 37 chr4 106324224 106324388 -77964274 - L2 LINE L2 -1132 2182 2045 565 258 189 0 chr4 106326084 106326274 -77962388 - MIR SINE MIR -29 233 8 2164 102 3 16 chr4 106326283 106326586 -77962076 - AluSc SINE Alu -10 299 1 348 325 60 24 chr4 106326634 106326800 -77961862 - L2 LINE L2 0 3272 3101 240 254 32 0 chr4 106328059 106328122 -77960540 + MER46C DNA MER2_type 3 67 -271 2229 121 0 0 chr4 106328132 106328437 -77960225 - AluSx SINE Alu -7 305 1 933 240 52 7 chr4 106328459 106328730 -77959932 + MER46C DNA MER2_type 55 337 -1 207 0 0 0 chr4 106329583 106329606 -77959056 + (T)n Simple_repeat Simple_repeat 1 23 0 763 316 117 59 chr4 106332914 106333154 -77955508 + L3 LINE CR1 360 585 -992 2254 116 0 0 chr4 106333154 106333456 -77955206 - AluSq SINE Alu -11 302 1 763 316 117 59 chr4 106333456 106334062 -77954600 + L3 LINE CR1 585 1255 -322 252 307 73 138 chr4 106334221 106334439 -77954223 + L3 LINE CR1 1261 1464 -113 453 338 127 23 chr4 106335833 106336141 -77952521 - MER102b DNA MER1_type 0 341 2 540 0 0 0 chr4 106338319 106338379 -77950283 + (TTCTG)n Simple_repeat Simple_repeat 4 63 0 240 35 0 0 chr4 106338378 106338407 -77950255 + (TTGTG)n Simple_repeat Simple_repeat 4 32 0 * 2209 95 24 3 chr4 106338933 106339229 -77949433 - AluSc SINE Alu -7 302 1 210 71 0 0 chr4 106339466 106339494 -77949168 + (TTA)n Simple_repeat Simple_repeat 2 29 0 28 86 0 0 chr4 106340763 106340833 -77947829 + AT_rich Low_complexity Low_complexity 1 70 0 210 130 14 43 chr4 106340846 106340915 -77947747 + (TAAA)n Simple_repeat Simple_repeat 1 67 0 249 264 55 91 chr4 106343202 106343312 -77945350 + MIR SINE MIR 49 154 -108 2008 143 3 10 chr4 106343317 106343631 -77945031 + AluJb SINE Alu 1 312 0 350 89 76 13 chr4 106343652 106343731 -77944931 + GA-rich Low_complexity Low_complexity 1 84 0 533 301 94 8 chr4 106343785 106344013 -77944649 + MIR SINE MIR 19 262 0 366 260 98 8 chr4 106344118 106344241 -77944421 + MIR SINE MIR 20 153 -109 236 295 39 13 chr4 106344538 106344616 -77944046 - L3 LINE CR1 -46 1531 1452 196 351 140 42 chr4 106345063 106345686 -77942976 + L2 LINE L2 1815 2498 -816 282 281 35 18 chr4 106345962 106346076 -77942586 + MLT1L LTR MaLR 169 284 -331 23 0 0 0 chr4 106346643 106346666 -77941996 + AT_rich Low_complexity Low_complexity 1 23 0 1995 130 3 0 chr4 106346667 106346952 -77941710 - AluSx SINE Alu -26 286 1 2712 125 42 6 chr4 106347187 106347682 -77940980 - L1MA8 LINE L1 -6 6285 5773 218 373 20 52 chr4 106347702 106347855 -77940807 + L2 LINE L2 2891 3038 -234 544 304 219 15 chr4 106348014 106348635 -77940027 - L2 LINE L2 0 3313 2543 196 366 14 0 chr4 106348635 106348706 -77939956 + L2 LINE L2 3239 3310 -3 23 0 0 0 chr4 106351327 106351350 -77937312 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 106352344 106352367 -77936295 + AT_rich Low_complexity Low_complexity 1 23 0 1234 252 72 22 chr4 106352535 106352940 -77935722 - L1ME3A LINE L1 -45 6125 5701 1733 100 15 23 chr4 106352940 106353201 -77935461 + AluSx SINE Alu 1 259 -53 1395 249 20 82 chr4 106353688 106353784 -77934878 - L1ME LINE L1 -377 5793 5693 2056 94 24 21 chr4 106353784 106354071 -77934591 + AluSx SINE Alu 1 288 -24 1395 249 20 82 chr4 106354071 106355044 -77933618 - L1ME LINE L1 -477 5693 4807 295 287 32 0 chr4 106355504 106355598 -77933064 - MIR SINE MIR -56 206 110 27 62 0 0 chr4 106355951 106355999 -77932663 + AT_rich Low_complexity Low_complexity 1 48 0 269 241 29 124 chr4 106356253 106356390 -77932272 - L2 LINE L2 -13 3259 3136 356 343 7 14 chr4 106358828 106358974 -77929688 - L2 LINE L2 -683 2631 2487 479 281 128 20 chr4 106360211 106360414 -77928248 + MIR SINE MIR 1 225 -37 29 47 0 0 chr4 106360452 106360495 -77928167 + AT_rich Low_complexity Low_complexity 1 43 0 2182 95 33 23 chr4 106360537 106360843 -77927819 + AluSg SINE Alu 1 309 -1 3536 118 209 81 chr4 106362154 106363530 -77925132 - pTR5 LTR ERV1 0 2438 743 242 357 169 31 chr4 106364318 106364892 -77923770 + L2 LINE L2 2108 2760 -554 813 287 35 45 chr4 106365064 106365664 -77922998 + L1MC5 LINE L1 7303 7896 -65 25 0 0 0 chr4 106365690 106365715 -77922947 + AT_rich Low_complexity Low_complexity 1 25 0 2353 87 0 3 chr4 106365977 106366287 -77922375 - AluSg1 SINE Alu 0 309 1 483 221 30 30 chr4 106366675 106366806 -77921856 + MIR SINE MIR 63 193 -69 457 319 77 0 chr4 106367743 106367925 -77920737 - MER91A DNA MER1_type 0 196 1 25 31 0 0 chr4 106368133 106368165 -77920497 + AT_rich Low_complexity Low_complexity 1 32 0 2259 109 7 3 chr4 106368545 106368849 -77919813 + AluSq SINE Alu 2 306 -7 360 0 0 0 chr4 106368854 106368894 -77919768 + (TA)n Simple_repeat Simple_repeat 2 41 0 450 276 204 6 chr4 106369360 106369541 -77919121 - MIR SINE MIR -30 232 16 2858 132 21 19 chr4 106371535 106372052 -77916610 - L1MA8 LINE L1 -17 6274 5757 184 248 55 110 chr4 106372147 106372199 -77916463 - L2 LINE L2 -8 3305 3261 2381 102 0 0 chr4 106372199 106372502 -77916160 + AluSq SINE Alu 1 303 -10 184 248 55 110 chr4 106372502 106372558 -77916104 - L2 LINE L2 -52 3261 3203 33442 106 11 15 chr4 106372609 106378776 -77909886 + L1PA6 LINE L1 11 6152 -2 770 280 62 9 chr4 106378857 106379082 -77909580 - MIR SINE MIR -6 256 20 2003 155 7 0 chr4 106379114 106379423 -77909239 + AluSx SINE Alu 2 312 0 226 286 116 75 chr4 106379685 106379832 -77908830 - L2 LINE L2 -456 2858 2706 4048 153 33 4 chr4 106380557 106381381 -77907281 + L1MA9 LINE L1 5342 6285 -27 2212 82 3 19 chr4 106381414 106381729 -77906933 - L1PA8 LINE L1 -3 6169 5860 1221 96 5 0 chr4 106381729 106381916 -77906746 + L1P LINE L1 5106 5293 -853 275 234 45 90 chr4 106381940 106382051 -77906611 + L2 LINE L2 3159 3264 -8 2285 98 3 0 chr4 106382167 106382473 -77906189 + AluSx SINE Alu 1 307 -5 2454 127 40 0 chr4 106383133 106383534 -77905128 + MSTA LTR MaLR 8 424 -4 1321 181 54 57 chr4 106383655 106384080 -77904582 - MSTA LTR MaLR 0 428 5 221 107 15 92 chr4 106384081 106384212 -77904450 + (CCCCCA)n Simple_repeat Simple_repeat 6 126 0 265 173 6 45 chr4 106384262 106384441 -77904221 + C-rich Low_complexity Low_complexity 2 173 0 201 150 33 17 chr4 106384441 106384501 -77904161 + (CACAC)n Simple_repeat Simple_repeat 3 63 0 775 125 8 23 chr4 106384791 106384919 -77903743 - AluSq/x SINE Alu -184 128 3 1840 107 32 11 chr4 106385185 106385466 -77903196 + L1PA11 LINE L1 5888 6174 0 922 277 40 20 chr4 106386562 106386858 -77901804 + LTR16C LTR ERVL 151 452 -39 195 42 0 0 chr4 106387110 106387134 -77901528 + (CA)n Simple_repeat Simple_repeat 2 25 0 2164 112 0 20 chr4 106387191 106387518 -77901144 + AluSx SINE Alu 1 312 0 21 0 0 0 chr4 106387975 106387996 -77900666 + AT_rich Low_complexity Low_complexity 1 21 0 407 274 236 29 chr4 106389879 106390087 -77898575 - MIR SINE MIR -10 252 2 1073 191 33 28 chr4 106390368 106390583 -77898079 - AluJo SINE Alu -12 300 85 7332 138 88 57 chr4 106390648 106392301 -77896361 + pTR5 LTR ERV1 735 2438 0 2151 136 0 0 chr4 106392425 106392719 -77895943 + AluSx SINE Alu 1 294 -18 7925 170 125 20 chr4 106394283 106395871 -77892791 + MER52A LTR ERV1 1 1755 0 2132 125 3 0 chr4 106396627 106396924 -77891738 - AluSq SINE Alu -15 298 1 295 95 24 0 chr4 106397327 106397369 -77891293 - THE1A LTR MaLR 0 355 313 2318 105 99 3 chr4 106397369 106397732 -77890930 + MLT2A1 LTR ERVL 1 398 -46 290 203 0 0 chr4 106397732 106397796 -77890866 - L1MC4 LINE L1 -1345 6697 6634 1848 161 62 11 chr4 106397796 106398149 -77890513 - THE1C LTR MaLR -2 373 3 24 0 0 0 chr4 106399022 106399046 -77889616 + AT_rich Low_complexity Low_complexity 1 24 0 2305 181 52 2 chr4 106399282 106399690 -77888972 + Tigger5 DNA MER2_type 1 428 -1895 4468 74 31 5 chr4 106399690 106400694 -77887968 + MER11A LTR ERVK 1 1266 0 9533 144 29 72 chr4 106400694 106402679 -77885983 + Tigger5 DNA MER2_type 423 2323 0 22 0 0 0 chr4 106402737 106402759 -77885903 + AT_rich Low_complexity Low_complexity 1 22 0 180 176 0 0 chr4 106402862 106402896 -77885766 + A-rich Low_complexity Low_complexity 4 37 0 23 54 0 0 chr4 106402959 106402996 -77885666 + AT_rich Low_complexity Low_complexity 1 37 0 361 331 83 11 chr4 106404124 106404353 -77884309 - MIR SINE MIR -2 260 19 345 47 0 0 chr4 106404489 106404532 -77884130 + (CA)n Simple_repeat Simple_repeat 1 43 0 278 264 78 8 chr4 106404849 106404978 -77883684 + MER117 DNA MER1_type 5 142 -55 230 289 90 58 chr4 106405026 106405182 -77883480 - L2 LINE L2 -1519 1795 1635 3488 284 112 37 chr4 106405421 106406503 -77882159 - L2 LINE L2 0 3313 2313 201 74 0 0 chr4 106406503 106406530 -77882132 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 1605 161 64 4 chr4 106406533 106406800 -77881862 - AluJo SINE Alu -29 283 1 3488 284 112 37 chr4 106406800 106406836 -77881826 - L2 LINE L2 -1001 2312 2280 2207 119 0 3 chr4 106406836 106407146 -77881516 + AluSc SINE Alu 1 309 0 3488 284 112 37 chr4 106407146 106407611 -77881051 - L2 LINE L2 -1033 2280 1615 773 209 0 0 chr4 106407612 106407741 -77880921 + Tigger7 DNA MER2_type 100 228 -477 * 2039 116 37 63 chr4 106407740 106408119 -77880543 + Tigger7 DNA MER2_type 2218 2586 -1 1626 130 65 11 chr4 106409165 106409427 -77879235 - AluJb SINE Alu -36 276 1 2084 55 0 26 chr4 106409536 106409808 -77878854 - AluY SINE Alu -46 265 1 542 288 19 25 chr4 106410491 106410651 -77878011 - MIR SINE MIR -100 162 4 29 0 0 0 chr4 106412293 106412322 -77876340 + AT_rich Low_complexity Low_complexity 1 29 0 22 21 0 62 chr4 106413204 106413252 -77875410 + AT_rich Low_complexity Low_complexity 1 45 0 2349 103 0 0 chr4 106414312 106414623 -77874039 - AluY SINE Alu 0 311 1 2193 159 15 13 chr4 106416510 106416906 -77871756 + MLT2C1 LTR ERVL 1 397 0 196 277 21 99 chr4 106417091 106417232 -77871430 + L2 LINE L2 2302 2431 -883 317 324 102 75 chr4 106417804 106418165 -77870497 + L2 LINE L2 2898 3268 -4 26 30 0 0 chr4 106418461 106418494 -77870168 + AT_rich Low_complexity Low_complexity 1 33 0 1114 236 156 36 chr4 106419977 106420362 -77868300 + MLT1J1 LTR MaLR 8 438 -8 23 0 0 0 chr4 106420456 106420479 -77868183 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr4 106421064 106421092 -77867570 + AT_rich Low_complexity Low_complexity 1 28 0 439 308 26 13 chr4 106421418 106421574 -77867088 + MIR SINE MIR 28 185 -77 228 67 0 0 chr4 106422491 106422521 -77866141 + (TG)n Simple_repeat Simple_repeat 2 31 0 2333 169 38 21 chr4 106423315 106423742 -77864920 + Tigger2a DNA MER2_type 1 434 0 705 263 88 14 chr4 106424438 106424655 -77864007 + MIR SINE MIR 13 245 -17 1735 83 25 0 chr4 106425786 106426027 -77862635 + L1PB1 LINE L1 5905 6151 0 2501 64 0 0 chr4 106426126 106426424 -77862238 - AluY SINE Alu -13 298 1 403 282 168 7 chr4 106427866 106428015 -77860647 + MIR3 SINE MIR 30 202 -6 21 0 0 0 chr4 106428637 106428658 -77860004 + AT_rich Low_complexity Low_complexity 1 21 0 423 38 0 0 chr4 106430001 106430054 -77858608 + (CA)n Simple_repeat Simple_repeat 2 54 0 182 248 198 33 chr4 106433802 106433923 -77854739 - MIR3 SINE MIR -67 141 1 266 286 100 0 chr4 106434061 106434131 -77854531 + L2 LINE L2 3144 3220 -52 281 56 0 0 chr4 106434211 106434247 -77854415 - MADE1 DNA Mariner -44 36 1 22 35 0 0 chr4 106434851 106434880 -77853782 + AT_rich Low_complexity Low_complexity 1 29 0 1525 187 8 0 chr4 106435310 106435561 -77853101 - AluJo SINE Alu -59 253 1 1738 127 40 87 chr4 106435659 106435981 -77852681 - AluSx SINE Alu -5 307 1 438 322 124 5 chr4 106437537 106437739 -77850923 - MIR SINE MIR -1 261 36 237 339 0 0 chr4 106438178 106438243 -77850419 + L2 LINE L2 3158 3222 -50 207 0 0 0 chr4 106438322 106438345 -77850317 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 263 316 60 43 chr4 106438349 106438466 -77850196 + MIR SINE MIR 21 139 -123 2213 106 0 0 chr4 106441635 106441918 -77846744 + AluSx SINE Alu 15 297 -15 610 202 26 0 chr4 106441962 106442076 -77846586 + FLAM_C SINE Alu 3 119 -14 210 270 149 0 chr4 106443087 106443161 -77845501 + MIR3 SINE MIR 121 205 -3 288 77 0 0 chr4 106443942 106443981 -77844681 + (TG)n Simple_repeat Simple_repeat 1 39 0 1749 147 3 54 chr4 106445056 106445369 -77843293 - AluJo SINE Alu -15 297 1 284 187 0 27 chr4 106446780 106446855 -77841807 + GA-rich Low_complexity Low_complexity 4 76 0 259 286 110 19 chr4 106446998 106447142 -77841520 + MIR3 SINE MIR 1 152 -65 379 309 51 38 chr4 106447159 106447395 -77841267 - L2 LINE L2 0 3313 3075 52 30 0 0 chr4 106447474 106447540 -77841122 + AT_rich Low_complexity Low_complexity 1 66 0 1441 177 74 14 chr4 106447608 106447891 -77840771 - AluJo SINE Alu -12 300 1 24 0 0 0 chr4 106448362 106448386 -77840276 + AT_rich Low_complexity Low_complexity 1 24 0 1769 120 40 11 chr4 106448388 106448663 -77839999 + AluY SINE Alu 16 298 -13 3609 30 2 0 chr4 106448936 106449365 -77839297 - L1PA5 LINE L1 -2 6152 5723 5957 36 8 1 chr4 106449365 106450415 -77838247 + L1PA5 LINE L1 4662 5718 -437 391 330 60 37 chr4 106450450 106450798 -77837864 - L1ME LINE L1 -440 5681 5326 189 107 0 0 chr4 106451517 106451545 -77837117 + (TG)n Simple_repeat Simple_repeat 1 28 0 220 273 53 76 chr4 106452018 106452150 -77836512 - L3b LINE CR1 -291 1292 1164 2150 152 6 3 chr4 106452368 106452704 -77835958 - MER1B DNA MER1_type 0 337 1 2038 158 24 3 chr4 106454280 106454616 -77834046 - MER2 DNA MER2_type 0 344 2 3225 139 31 15 chr4 106454930 106455449 -77833213 - MER1A DNA MER1_type 0 527 1 235 345 35 9 chr4 106457816 106457932 -77830730 - L2 LINE L2 0 3272 3154 807 225 129 14 chr4 106458514 106458723 -77829939 - MIR SINE MIR -29 233 1 27 0 0 0 chr4 106458733 106458760 -77829902 + AT_rich Low_complexity Low_complexity 1 27 0 489 317 75 0 chr4 106459279 106459465 -77829197 - MIR SINE MIR -15 247 48 4428 161 36 29 chr4 106459868 106460092 -77828570 - L1MB8 LINE L1 0 6178 5957 2306 105 0 3 chr4 106460092 106460397 -77828265 - AluSx SINE Alu -2 310 7 4428 161 36 29 chr4 106460397 106461150 -77827512 - L1MB8 LINE L1 -221 5957 5195 846 95 0 29 chr4 106461155 106461292 -77827370 - L1PA13 LINE L1 0 6163 6031 2485 46 0 10 chr4 106461848 106462150 -77826512 - AluY SINE Alu -12 299 1 314 219 16 0 chr4 106464154 106464218 -77824444 + L2 LINE L2 3249 3313 0 46 19 0 0 chr4 106466382 106466435 -77822227 + AT_rich Low_complexity Low_complexity 1 53 0 277 331 123 8 chr4 106466855 106466985 -77821677 + L2 LINE L2 3128 3272 0 272 375 45 0 chr4 106467017 106467105 -77821557 - L2 LINE L2 -42 3271 3180 359 218 274 0 chr4 106467127 106467251 -77821411 - L2 LINE L2 -1384 1930 1773 1715 196 3 0 chr4 106467976 106468267 -77820395 - AluSx SINE Alu -20 292 1 233 256 244 0 chr4 106469968 106470046 -77818616 - MER5A DNA MER1_type -83 106 10 29 28 0 0 chr4 106470208 106470244 -77818418 + AT_rich Low_complexity Low_complexity 1 36 0 968 98 148 44 chr4 106470309 106470414 -77818248 + MER30 DNA MER1_type 1 94 -136 324 0 0 0 chr4 106470414 106470450 -77818212 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 968 98 148 44 chr4 106470450 106470527 -77818135 + MER30 DNA MER1_type 94 202 -28 820 114 48 24 chr4 106470613 106470780 -77817882 - L1MA5 LINE L1 -6 6294 6124 1529 148 0 49 chr4 106471134 106471398 -77817264 - AluJo SINE Alu -39 273 23 763 238 72 0 chr4 106472699 106472880 -77815782 + MER20 DNA MER1_type 7 200 -19 547 255 40 13 chr4 106472890 106473039 -77815623 + MER5A DNA MER1_type 1 153 -36 363 261 72 9 chr4 106473235 106473346 -77815316 + MIR SINE MIR 87 204 -58 1581 170 0 100 chr4 106473721 106474050 -77814612 + AluJo SINE Alu 1 296 -16 188 309 0 0 chr4 106474412 106474467 -77814195 + L2 LINE L2 3258 3312 -1 1639 134 0 158 chr4 106476654 106477065 -77811597 + MER7A DNA MER2_type 3 346 0 1621 143 147 25 chr4 106477265 106477707 -77810955 - LTR54B LTR ERV1 -2 496 1 1557 176 0 34 chr4 106477745 106478040 -77810622 + AluJb SINE Alu 1 285 -27 24 0 0 0 chr4 106478041 106478065 -77810597 + AT_rich Low_complexity Low_complexity 1 24 0 2335 86 0 7 chr4 106478086 106478389 -77810273 - AluSc SINE Alu -7 302 2 536 256 227 24 chr4 106479297 106479504 -77809158 + MIR SINE MIR 14 262 0 24 32 0 0 chr4 106480039 106480070 -77808592 + AT_rich Low_complexity Low_complexity 1 31 0 408 163 76 11 chr4 106480385 106480477 -77808185 + L1MC1 LINE L1 6235 6332 -1 373 211 219 8 chr4 106480493 106480621 -77808041 + L1ME LINE L1 5511 5665 -456 2080 229 150 14 chr4 106481666 106482388 -77806274 - L1M4 LINE L1 -3216 2930 2111 26 0 0 0 chr4 106482691 106482717 -77805945 + AT_rich Low_complexity Low_complexity 1 26 0 2263 221 64 93 chr4 106483033 106483518 -77805144 + L1MC5 LINE L1 6692 7189 -772 1672 201 7 7 chr4 106483518 106483826 -77804836 + AluJo SINE Alu 1 308 -4 180 0 0 0 chr4 106483829 106483849 -77804813 + (TC)n Simple_repeat Simple_repeat 2 21 0 2263 221 64 93 chr4 106483849 106484502 -77804160 + L1MC5 LINE L1 7191 7801 -160 2041 113 0 7 chr4 106484618 106484892 -77803770 + AluSx SINE Alu 1 272 -40 1700 173 0 4 chr4 106486215 106486487 -77802175 - AluJb SINE Alu -30 282 12 5101 30 3 0 chr4 106487463 106488066 -77800596 - L1PA4 LINE L1 -2 6153 5549 25 0 0 0 chr4 106488145 106488170 -77800492 + AT_rich Low_complexity Low_complexity 1 25 0 894 132 66 80 chr4 106488194 106488407 -77800255 + Tigger1 DNA MER2_type 2209 2418 0 814 211 29 0 chr4 106488511 106488682 -77799980 - AluSx SINE Alu -1 311 136 949 109 0 22 chr4 106488827 106488964 -77799698 - AluSx SINE Alu -179 134 1 433 319 116 55 chr4 106489813 106490544 -77798118 + L2 LINE L2 2092 2867 -447 242 368 62 42 chr4 106491049 106491242 -77797420 + L2 LINE L2 2986 3182 -90 382 346 40 26 chr4 106491383 106491611 -77797051 + MIR SINE MIR 20 250 -12 275 304 16 134 chr4 106491975 106492228 -77796434 - L2 LINE L2 -191 3081 2859 7350 169 59 19 chr4 106493405 106494953 -77793709 + L1MC1 LINE L1 116 2187 -4240 735 167 14 0 chr4 106495085 106495229 -77793433 + L1MA7 LINE L1 6143 6288 -3 * 7945 226 56 16 chr4 106495224 106497254 -77791408 + L1MC1 LINE L1 2528 4668 -1758 1881 178 3 0 chr4 106497254 106497557 -77791105 + AluJb SINE Alu 1 304 -8 7945 226 56 16 chr4 106497557 106497906 -77790756 + L1MC1 LINE L1 4668 5002 -1424 6164 172 25 5 chr4 106497905 106499177 -77789485 + L1MC1 LINE L1 5303 6607 -6 * 871 27 0 27 chr4 106500987 106501099 -77787563 + L1PA3 LINE L1 6047 6155 0 216 352 19 19 chr4 106501551 106501656 -77787006 + MIR SINE MIR 1 105 -157 926 131 0 21 chr4 106501658 106501803 -77786859 - FLAM_C SINE Alu -1 142 1 317 119 17 17 chr4 106501929 106501988 -77786674 + LTR19C LTR ERV1 719 777 -2 4666 127 25 3 chr4 106502135 106502827 -77785835 + LTR39 LTR ERV1 1 707 -76 413 293 75 8 chr4 106503130 106503263 -77785399 - MER5B DNA MER1_type -36 142 1 2381 81 3 0 chr4 106503309 106503604 -77785058 - AluSp SINE Alu -17 296 1 1175 22 0 0 chr4 106504051 106504190 -77784472 + L1PA2 LINE L1 6017 6155 0 350 177 257 0 chr4 106505121 106505234 -77783428 - Charlie7 DNA MER1_type -1891 721 580 321 184 29 0 chr4 106505306 106505409 -77783253 + Charlie5 DNA MER1_type 2426 2531 -81 572 174 0 0 chr4 106505430 106505539 -77783123 + Charlie5 DNA MER1_type 2477 2585 -27 203 216 39 0 chr4 106506390 106506441 -77782221 + (CATA)n Simple_repeat Simple_repeat 3 55 0 204 297 40 30 chr4 106506772 106506873 -77781789 + L3b LINE CR1 1350 1451 -132 327 323 16 8 chr4 106507786 106507910 -77780752 + L2 LINE L2 3189 3313 0 588 311 137 46 chr4 106508866 106509480 -77779182 - L2 LINE L2 -879 2435 1766 293 243 14 14 chr4 106510169 106510243 -77778419 - L2 LINE L2 0 3313 3240 204 37 0 0 chr4 106510274 106510284 -77778378 + (TAA)n Simple_repeat Simple_repeat 2 11 -17 2164 108 0 3 chr4 106510284 106510572 -77778090 + AluSq SINE Alu 1 287 -26 204 37 0 0 chr4 106510572 106510588 -77778074 + (TAA)n Simple_repeat Simple_repeat 10 28 0 959 212 169 25 chr4 106510935 106511322 -77777340 + MLT1F LTR MaLR 74 542 0 237 308 67 58 chr4 106511559 106511799 -77776863 + L2 LINE L2 2481 2722 -592 279 0 0 0 chr4 106512153 106512184 -77776478 + (TG)n Simple_repeat Simple_repeat 2 32 0 30593 98 15 22 chr4 106512184 106512865 -77775797 - L1PA7 LINE L1 -29 6440 5755 2406 81 3 3 chr4 106512865 106513175 -77775487 - AluY SINE Alu -1 310 1 30593 98 15 22 chr4 106513175 106513839 -77774823 - L1PA7 LINE L1 -714 5755 5088 4796 31 2 3 chr4 106513839 106514412 -77774250 - L1PA4 LINE L1 0 6155 5584 30593 98 15 22 chr4 106514412 106518765 -77769897 - L1PA7 LINE L1 -1381 5088 768 2527 53 3 0 chr4 106519236 106519535 -77769127 - AluY SINE Alu -11 300 1 2210 112 0 7 chr4 106519730 106520035 -77768627 + AluSq SINE Alu 6 308 -5 2185 130 0 0 chr4 106521703 106522003 -77766659 + AluSx SINE Alu 1 300 -12 27 81 0 0 chr4 106523468 106523530 -77765132 + AT_rich Low_complexity Low_complexity 1 62 0 231 93 23 23 chr4 106523560 106523603 -77765059 - Alu SINE Alu -7 126 84 190 375 87 10 chr4 106523608 106523712 -77764950 - L2 LINE L2 -10 3262 3151 22 35 0 0 chr4 106523921 106523950 -77764712 + AT_rich Low_complexity Low_complexity 1 29 0 869 156 0 6 chr4 106524101 106524274 -77764388 + (TG)n Simple_repeat Simple_repeat 1 172 0 397 179 0 0 chr4 106525299 106525377 -77763285 + L1MB5 LINE L1 6088 6165 -9 21 0 0 0 chr4 106526256 106526277 -77762385 + AT_rich Low_complexity Low_complexity 1 21 0 2323 155 19 43 chr4 106526747 106527230 -77761432 + L1MB3 LINE L1 5706 6176 -7 2352 74 17 0 chr4 106527272 106527568 -77761094 + AluSp SINE Alu 1 301 -12 338 291 155 20 chr4 106527956 106528104 -77760558 - MIR SINE MIR -14 248 81 208 273 131 10 chr4 106528379 106528478 -77760184 + L3b LINE CR1 1355 1465 -118 198 355 123 14 chr4 106532672 106532810 -77755852 - L2 LINE L2 -1 3271 3119 219 291 212 24 chr4 106583282 106583447 -77705215 - MIR SINE MIR -44 218 23 193 383 114 10 chr4 106583796 106583989 -77704673 + L2 LINE L2 2545 2757 -557 671 204 61 41 chr4 106584084 106584280 -77704382 + MIR SINE MIR 63 262 0 293 304 14 0 chr4 106584398 106584467 -77704195 - MIR SINE MIR -188 74 5 2277 106 0 0 chr4 106586214 106586516 -77702146 - AluSx SINE Alu -10 302 1 1618 167 20 37 chr4 106586961 106587261 -77701401 + AluSx SINE Alu 1 295 -17 2542 62 0 0 chr4 106587413 106587717 -77700945 - AluY SINE Alu -7 304 1 2357 91 0 0 chr4 106587952 106588250 -77700412 + AluSx SINE Alu 1 298 -14 2080 127 3 0 chr4 106588568 106588874 -77699788 + AluSx SINE Alu 1 307 0 324 313 94 0 chr4 106589193 106589321 -77699341 + L3b LINE CR1 1295 1434 -149 329 289 82 67 chr4 106589587 106589722 -77698940 - L2 LINE L2 0 3272 3136 455 326 110 36 chr4 106590032 106590422 -77698240 - L2 LINE L2 -572 2742 2324 21 57 0 0 chr4 106590575 106590610 -77698052 + AT_rich Low_complexity Low_complexity 1 35 0 396 0 0 0 chr4 106591236 106591280 -77697382 + (TG)n Simple_repeat Simple_repeat 2 45 0 469 276 144 11 chr4 106591823 106591997 -77696665 + MIR SINE MIR 66 262 0 1210 169 13 21 chr4 106593329 106593566 -77695096 + MER46A DNA MER2_type 1 235 -1 6954 21 0 0 chr4 106594643 106595446 -77693216 - L1PA2 LINE L1 0 6155 5353 6658 34 0 0 chr4 106595441 106596237 -77692425 + L1P LINE L1 3650 4445 -1701 * 310 282 0 0 chr4 106596439 106596510 -77692152 - L2 LINE L2 0 3313 3243 506 300 117 9 chr4 106596587 106596817 -77691845 - MIR SINE MIR -4 258 4 2009 140 17 0 chr4 106597672 106597965 -77690697 + AluJb SINE Alu 5 302 -10 208 347 14 0 chr4 106598117 106598189 -77690473 - MIR3 SINE MIR -17 191 119 213 326 121 37 chr4 106598427 106598617 -77690045 - L2 LINE L2 -194 3078 2873 262 257 35 62 chr4 106599466 106599579 -77689083 + MIR SINE MIR 88 197 -65 205 267 0 50 chr4 106599662 106599722 -77688940 - MIR3 SINE MIR -11 197 141 2408 83 0 3 chr4 106601840 106602141 -77686521 + AluSx SINE Alu 1 300 -12 224 245 38 0 chr4 106602158 106602211 -77686451 + L2 LINE L2 3253 3307 -6 319 213 25 57 chr4 106602231 106602353 -77686309 - MER110 LTR ERV1 -51 440 323 607 371 97 15 chr4 106602434 106602890 -77685772 - L3 LINE CR1 -117 1460 968 2235 98 0 7 chr4 106603565 106603861 -77684801 + AluSc SINE Alu 1 294 -15 1595 204 21 3 chr4 106604493 106604827 -77683835 - MLT1A1 LTR MaLR -2 363 24 1090 200 148 12 chr4 106605039 106605289 -77683373 + AluJo SINE Alu 1 284 -18 286 273 101 29 chr4 106606174 106606362 -77682300 + L1MC4 LINE L1 7533 7706 -336 1894 112 26 8 chr4 106606362 106606630 -77682032 - AluSg SINE Alu -10 300 28 286 273 101 29 chr4 106606630 106606704 -77681958 + L1MC4 LINE L1 7706 7918 -124 1643 151 3 56 chr4 106608977 106609261 -77679401 - AluJo SINE Alu -30 282 14 252 229 14 14 chr4 106609671 106609741 -77678921 - MER103 DNA DNA -1 165 96 2162 123 7 16 chr4 106609854 106610162 -77678500 + AluSx SINE Alu 1 305 -7 780 343 111 58 chr4 106610209 106611222 -77677440 + L3 LINE CR1 510 1575 -2 684 171 65 6 chr4 106611303 106611473 -77677189 - MER63 DNA MER1_type 0 1060 881 362 237 31 0 chr4 106611470 106611567 -77677095 - MER63 DNA MER1_type -302 759 660 * 180 97 0 0 chr4 106611569 106611600 -77677062 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 870 246 29 5 chr4 106612272 106612479 -77676183 + MER20 DNA MER1_type 2 213 -6 22 56 0 0 chr4 106613081 106613117 -77675545 + AT_rich Low_complexity Low_complexity 1 36 0 23 78 0 0 chr4 106613195 106613246 -77675416 + AT_rich Low_complexity Low_complexity 1 51 0 25 0 0 0 chr4 106614207 106614232 -77674430 + AT_rich Low_complexity Low_complexity 1 25 0 393 75 0 0 chr4 106614674 106614727 -77673935 + (CA)n Simple_repeat Simple_repeat 2 54 0 1548 171 103 3 chr4 106614777 106615164 -77673498 + LTR37A LTR ERV1 1 426 0 1374 87 121 5 chr4 106616386 106616592 -77672070 + MER30 DNA MER1_type 1 230 0 186 333 0 42 chr4 106621763 106621835 -77666827 - L3b LINE CR1 -265 1318 1250 452 324 0 0 chr4 106622157 106622262 -77666400 + L2 LINE L2 3136 3240 -32 480 328 6 53 chr4 106622280 106622451 -77666211 - MIR3 SINE MIR -23 185 23 23 33 0 0 chr4 106622813 106622843 -77665819 + AT_rich Low_complexity Low_complexity 1 30 0 251 143 18 36 chr4 106622924 106622980 -77665682 + L1MB8 LINE L1 6041 6095 -83 285 345 12 0 chr4 106623334 106623418 -77665244 + MIR SINE MIR 53 137 -71 279 79 0 0 chr4 106623561 106623599 -77665063 + (T)n Simple_repeat Simple_repeat 1 38 0 401 330 8 8 chr4 106623599 106623717 -77664945 - MIR SINE MIR -122 140 23 468 224 157 15 chr4 106623762 106623896 -77664766 + MIR SINE MIR 49 201 -61 723 173 34 125 chr4 106629695 106629903 -77658759 + MER5A DNA MER1_type 1 189 0 735 281 150 21 chr4 106630114 106630541 -77658121 + L2 LINE L2 2043 2524 -790 1891 215 77 4 chr4 106631227 106631696 -77656966 + MLT1D LTR MaLR 1 503 -2 222 37 0 0 chr4 106632073 106632100 -77656562 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1686 155 34 0 chr4 106632110 106632374 -77656288 - AluJb SINE Alu -39 273 1 2423 77 6 6 chr4 106632890 106633203 -77655459 - AluSp SINE Alu 0 313 1 647 263 89 22 chr4 106633891 106634115 -77654547 + MIR SINE MIR 14 252 -10 27 0 0 0 chr4 106634136 106634163 -77654499 + AT_rich Low_complexity Low_complexity 1 27 0 769 179 56 138 chr4 106634353 106634473 -77654189 - L1ME2 LINE L1 -179 5985 5857 1787 171 20 10 chr4 106634473 106634766 -77653896 - AluJo SINE Alu -16 296 1 769 179 56 138 chr4 106634766 106634985 -77653677 - L1ME2 LINE L1 -307 5857 5674 612 335 88 17 chr4 106634990 106635364 -77653298 + L1ME LINE L1 4622 5030 -1116 7455 123 31 22 chr4 106635364 106635767 -77652895 + HSMAR2 DNA Mariner 2 400 -902 4707 165 56 8 chr4 106635767 106636629 -77652033 + MER4D LTR ERV1 1 903 0 7455 123 31 22 chr4 106636629 106637514 -77651148 + HSMAR2 DNA Mariner 400 1302 0 608 271 23 17 chr4 106637515 106637866 -77650796 + L1ME LINE L1 5029 5381 -765 4350 114 11 0 chr4 106637866 106638514 -77650148 - L1PA13 LINE L1 -6 6157 5503 744 183 7 7 chr4 106638518 106638660 -77650002 + LTR28 LTR ERV1 1 142 -878 591 216 113 14 chr4 106638725 106638981 -77649681 + MER52A LTR ERV1 275 1232 -137 4111 193 36 10 chr4 106639122 106639987 -77648675 + LTR28-int LTR ERV1 1 887 -6204 4595 151 19 54 chr4 106640009 106641110 -77647552 + LTR28-int LTR ERV1 1003 2330 -4761 * 29142 111 13 8 chr4 106641099 106643069 -77645593 + LTR28-int LTR ERV1 2744 4702 -2389 2334 81 3 10 chr4 106643069 106643379 -77645283 + AluY SINE Alu 1 308 -3 1622 72 14 0 chr4 106643383 106643592 -77645070 + AluY SINE Alu 86 297 -14 29142 111 13 8 chr4 106643592 106645942 -77642720 + LTR28-int LTR ERV1 4704 7091 0 826 231 0 6 chr4 106645942 106646115 -77642547 + LTR28 LTR ERV1 1 172 -848 600 211 40 64 chr4 106646158 106646407 -77642255 + MER52A LTR ERV1 340 1232 -12 1468 58 14 0 chr4 106646491 106646699 -77641963 - L1P4 LINE L1 -650 5513 5303 691 248 50 4 chr4 106646697 106646935 -77641727 + L1ME LINE L1 5369 5617 -553 * 1117 156 173 90 chr4 106647004 106647350 -77641312 - THE1C LTR MaLR 0 375 1 2389 65 188 136 chr4 106647353 106647531 -77641131 + LTR12 LTR ERV1 1 168 -546 4035 36 0 0 chr4 106647531 106648007 -77640655 + L1PA5 LINE L1 5671 6146 -8 2389 65 188 136 chr4 106648007 106648380 -77640282 + LTR12 LTR ERV1 168 581 -133 9708 119 22 36 chr4 106648383 106649981 -77638681 - THE1C-int LTR MaLR -2 1578 3 1711 154 69 36 chr4 106649983 106650346 -77638316 - THE1C LTR MaLR 0 375 1 409 283 50 13 chr4 106650517 106650676 -77637986 + MLT1-int LTR MaLR 436 600 -771 2182 149 37 25 chr4 106651511 106651752 -77636910 + LTR69 LTR ERVL 1 238 -350 1612 182 45 24 chr4 106651752 106652043 -77636619 + AluJo SINE Alu 1 297 -15 2182 149 37 25 chr4 106652043 106652342 -77636320 + LTR69 LTR ERVL 238 588 0 1362 254 42 6 chr4 106652406 106652760 -77635902 + MLT1F LTR MaLR 176 542 0 399 263 81 45 chr4 106652880 106653078 -77635584 - L1ME3A LINE L1 -285 5954 5750 2674 186 68 4 chr4 106653105 106653633 -77635029 - MLT1F1 LTR MaLR -5 562 1 2412 67 3 0 chr4 106653668 106653980 -77634682 + L1PA10 LINE L1 5852 6164 -4 434 251 27 27 chr4 106653993 106654143 -77634519 - L1ME3A LINE L1 -562 5669 5539 425 328 72 34 chr4 106654234 106654462 -77634200 - L2 LINE L2 -289 3024 2795 310 75 0 0 chr4 106654521 106654561 -77634101 - MER5B DNA MER1_type 0 178 139 565 278 88 10 chr4 106654841 106655035 -77633627 - L2 LINE L2 -2306 1008 800 259 250 36 48 chr4 106655070 106655154 -77633508 - MER5B DNA MER1_type -68 110 28 530 268 40 30 chr4 106655190 106655388 -77633274 - L2 LINE L2 -2504 810 611 22 0 0 0 chr4 106655493 106655515 -77633147 + AT_rich Low_complexity Low_complexity 1 22 0 1396 197 17 92 chr4 106655526 106656151 -77632511 + L1MB8 LINE L1 4916 5495 -689 379 189 7 20 chr4 106656151 106656299 -77632363 - MLT1A1 LTR MaLR -1 364 134 2602 173 15 51 chr4 106656345 106656638 -77632024 + L1MB8 LINE L1 5583 5844 -334 2523 53 0 3 chr4 106656638 106656940 -77631722 + AluY SINE Alu 1 301 -10 2602 173 15 51 chr4 106656940 106657258 -77631404 + L1MB8 LINE L1 5844 6172 -6 2290 194 63 23 chr4 106657323 106657896 -77630766 + L1MB5 LINE L1 5579 6174 0 593 298 31 42 chr4 106658820 106659109 -77629553 - MER115 DNA AcHobo -362 331 46 703 250 131 4 chr4 106660085 106660337 -77628325 + Charlie8 DNA MER1_type 1 284 -2133 4173 243 48 19 chr4 106661523 106662972 -77625690 - L1ME3A LINE L1 -844 5371 3880 752 231 53 45 chr4 106663004 106663761 -77624901 - L1MEc LINE L1 -2451 3764 3015 882 153 0 0 chr4 106663761 106663892 -77624770 + FLAM_C SINE Alu 3 133 0 752 231 53 45 chr4 106663892 106664429 -77624233 - L1MEc LINE L1 -3200 3015 2338 237 65 0 0 chr4 106664429 106664460 -77624202 + (TG)n Simple_repeat Simple_repeat 2 32 0 752 231 53 45 chr4 106664460 106664656 -77624006 - L1MEc LINE L1 -3877 2338 2145 36042 80 14 8 chr4 106665325 106671430 -77617232 + L1PA3 LINE L1 11 6154 -1 2987 62 3 5 chr4 106671449 106671838 -77616824 + L1PA6 LINE L1 5767 6154 0 2329 92 0 0 chr4 106673388 106673691 -77614971 + AluSg SINE Alu 1 303 -7 401 209 378 7 chr4 106674140 106674327 -77614335 + MIR SINE MIR 2 262 0 2071 169 17 8 chr4 106674346 106674708 -77613954 + MLT1A1 LTR MaLR 1 365 0 564 180 0 33 chr4 106675428 106675550 -77613112 - L1ME3A LINE L1 -5 6165 6048 1220 262 27 12 chr4 106675586 106675995 -77612667 - L1ME3A LINE L1 -215 5955 5541 370 121 0 15 chr4 106676019 106676085 -77612577 - MADE1 DNA Mariner 0 80 16 297 89 0 0 chr4 106676356 106676401 -77612261 + (CA)n Simple_repeat Simple_repeat 1 45 0 2447 80 0 0 chr4 106677010 106677321 -77611341 + AluY SINE Alu 1 311 0 29 0 0 0 chr4 106677325 106677354 -77611308 + AT_rich Low_complexity Low_complexity 1 29 0 267 104 0 0 chr4 106677615 106677663 -77610999 + (TC)n Simple_repeat Simple_repeat 2 49 0 288 53 0 0 chr4 106677663 106677701 -77610961 + (CA)n Simple_repeat Simple_repeat 1 38 0 272 170 0 0 chr4 106678959 106679006 -77609656 - MER116 DNA Mariner -6 74 28 27 0 0 0 chr4 106679029 106679056 -77609606 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chr4 106679139 106679176 -77609486 + AT_rich Low_complexity Low_complexity 1 37 0 462 279 78 59 chr4 106679359 106679500 -77609162 + HAL1 LINE L1 1925 2073 -434 2550 46 3 0 chr4 106679500 106679807 -77608855 + AluY SINE Alu 1 308 -3 462 279 78 59 chr4 106679807 106679884 -77608778 + HAL1 LINE L1 2073 2147 -360 22 35 0 0 chr4 106680332 106680361 -77608301 + AT_rich Low_complexity Low_complexity 1 29 0 944 272 39 16 chr4 106681469 106681723 -77606939 + MIR SINE MIR 3 262 0 303 49 0 0 chr4 106681764 106681805 -77606857 + (CA)n Simple_repeat Simple_repeat 1 41 0 2272 60 43 0 chr4 106682404 106682686 -77605976 - AluY SINE Alu -13 298 5 2053 125 7 17 chr4 106683608 106683903 -77604759 + AluSx SINE Alu 1 292 -20 681 204 0 0 chr4 106683930 106684043 -77604619 - MER81 DNA DNA 0 114 2 2974 161 21 41 chr4 106684059 106684623 -77604039 + MLT2B3 LTR ERVL 2 554 0 2095 123 0 0 chr4 106685830 106686139 -77602523 + AluSx SINE Alu 1 309 0 2202 106 7 0 chr4 106686299 106686592 -77602070 - AluSc SINE Alu -12 297 3 1004 252 25 66 chr4 106686637 106687030 -77601632 + LTR33 LTR ERVL 145 521 0 1448 233 62 33 chr4 106687660 106688145 -77600517 + MLT1J LTR MaLR 5 503 -8 240 224 177 68 chr4 106688146 106688293 -77600369 + L2 LINE L2 3151 3313 0 735 296 70 4 chr4 106688388 106688631 -77600031 + MIR SINE MIR 2 260 -2 2646 206 79 5 chr4 106688644 106689251 -77599411 - MER82 DNA MER2_type 0 653 2 264 30 0 0 chr4 106689254 106689287 -77599375 + (TG)n Simple_repeat Simple_repeat 2 34 0 2223 107 0 0 chr4 106689311 106689600 -77599062 + AluSx SINE Alu 1 289 -23 21 36 0 0 chr4 106690093 106690121 -77598541 + AT_rich Low_complexity Low_complexity 1 28 0 407 360 31 44 chr4 106690169 106690260 -77598402 + MIR SINE MIR 23 114 -148 2102 130 0 0 chr4 106690260 106690553 -77598109 - AluSx SINE Alu -4 308 16 407 360 31 44 chr4 106690553 106690689 -77597973 + MIR SINE MIR 114 247 -15 3582 66 19 0 chr4 106690872 106691341 -77597321 - L1PA8 LINE L1 -6 6166 5689 335 317 0 0 chr4 106691539 106691643 -77597019 - L2 LINE L2 0 3313 3210 223 332 164 37 chr4 106692209 106692477 -77596185 - L2 LINE L2 -167 3105 2804 21 0 0 0 chr4 106693709 106693730 -77594932 + AT_rich Low_complexity Low_complexity 1 21 0 288 252 15 0 chr4 106693817 106693890 -77594772 + Zaphod DNA AcHobo 2 75 -618 513 263 90 17 chr4 106693905 106694186 -77594476 + MER115 DNA AcHobo 130 494 -199 * 561 259 7 0 chr4 106694185 106694320 -77594342 + Zaphod DNA AcHobo 3895 4030 -1 2089 148 0 0 chr4 106695767 106696078 -77592584 - AluSx SINE Alu -1 311 1 1798 131 10 67 chr4 106696201 106696513 -77592149 + AluJo SINE Alu 1 294 -18 342 0 0 0 chr4 106697654 106697692 -77590970 + (TG)n Simple_repeat Simple_repeat 1 38 0 211 316 0 0 chr4 106697713 106697770 -77590892 - MIR SINE MIR -4 258 202 * 578 291 8 0 chr4 106697768 106697902 -77590760 - L2 LINE L2 0 3313 3179 508 326 92 45 chr4 106698086 106698466 -77590196 - L2 LINE L2 -453 2861 2464 1423 160 33 73 chr4 106699945 106700245 -77588417 - AluJo SINE Alu -24 288 1 334 174 12 23 chr4 106700426 106700512 -77588150 + GA-rich Low_complexity Low_complexity 4 88 0 585 239 164 49 chr4 106700619 106700845 -77587817 - MIR SINE MIR 0 262 11 227 140 0 100 chr4 106700862 106700912 -77587750 + MER5C DNA MER1_type 1 45 -279 384 22 0 0 chr4 106700980 106701025 -77587637 + (TTA)n Simple_repeat Simple_repeat 2 46 0 2217 103 0 26 chr4 106701140 106701442 -77587220 - AluSx SINE Alu -16 296 3 181 283 0 17 chr4 106701612 106701672 -77586990 - MIR SINE MIR -169 93 35 2161 128 0 0 chr4 106701869 106702174 -77586488 - AluSx SINE Alu -7 305 1 216 252 280 0 chr4 106702558 106702665 -77585997 - L3 LINE CR1 -4 1573 1437 511 284 89 6 chr4 106702690 106702859 -77585803 + MIR SINE MIR 28 210 -52 248 291 25 0 chr4 106702900 106702979 -77585683 - L3 LINE CR1 -530 1047 967 864 274 96 57 chr4 106703043 106703583 -77585079 - L2 LINE L2 -209 3104 2534 505 322 62 5 chr4 106703583 106703794 -77584868 - L2 LINE L2 -1274 2040 1818 1030 247 110 15 chr4 106703794 106704248 -77584414 + L1MEc LINE L1 41 537 -5859 1803 265 67 30 chr4 106704249 106704848 -77583814 - L2 LINE L2 -1624 1690 1070 704 316 212 30 chr4 106704846 106705422 -77583240 - L3 LINE CR1 -615 962 282 * 2359 103 0 0 chr4 106705693 106705995 -77582667 - AluSg SINE Alu -8 302 1 2241 99 0 3 chr4 106706082 106706375 -77582287 + AluSg SINE Alu 1 292 -18 284 281 65 7 chr4 106706530 106706669 -77581993 + MLT1L LTR MaLR 387 533 -82 343 270 96 31 chr4 106707413 106707587 -77581075 + MIR SINE MIR 31 212 -50 635 273 33 16 chr4 106707930 106708113 -77580549 - MER63A DNA MER1_type -24 186 1 180 0 0 0 chr4 106708163 106708183 -77580479 + (CAT)n Simple_repeat Simple_repeat 1 20 0 2544 71 0 0 chr4 106708204 106708515 -77580147 + AluY SINE Alu 1 311 0 772 239 13 7 chr4 106708670 106708825 -77579837 - MER5A DNA MER1_type -4 185 30 266 299 0 0 chr4 106709102 106709169 -77579493 + MIR3 SINE MIR 98 164 -44 5818 209 94 57 chr4 106709631 106711323 -77577339 + MER52A LTR ERV1 1 1755 0 271 391 0 0 chr4 106711359 106711446 -77577216 + L2 LINE L2 3200 3286 -27 198 0 0 0 chr4 106711449 106711471 -77577191 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 736 253 92 44 chr4 106711824 106712140 -77576522 - LTR16C LTR ERVL -12 479 149 198 0 0 0 chr4 106712440 106712462 -77576200 + (T)n Simple_repeat Simple_repeat 1 22 0 3352 110 25 22 chr4 106712464 106712954 -77575708 - LTR9B LTR ERV1 -88 556 62 2176 71 12 86 chr4 106712954 106713292 -77575370 + AluSp SINE Alu 1 313 0 3352 110 25 22 chr4 106713292 106713355 -77575307 - LTR9B LTR ERV1 -582 62 1 2823 118 16 29 chr4 106713356 106713806 -77574856 - HUERS-P3b LTR ERV1 -7 7411 6968 219 366 45 9 chr4 106713946 106714058 -77574604 + L2 LINE L2 3197 3312 -1 209 274 27 55 chr4 106714518 106714591 -77574071 + L2 LINE L2 3182 3252 -20 265 306 56 28 chr4 106715962 106716070 -77572592 + L3 LINE CR1 1462 1572 -5 352 343 20 7 chr4 106717088 106717234 -77571428 - MIR SINE MIR -108 154 7 210 329 100 47 chr4 106717679 106717849 -77570813 + MIR3 SINE MIR 20 198 -10 1596 131 13 50 chr4 106718058 106718356 -77570306 - THE1B LTR MaLR -77 287 1 1303 75 5 0 chr4 106718356 106718543 -77570119 - THE1B-int LTR MaLR 0 1580 1393 384 231 0 0 chr4 106718543 106718655 -77570007 + FLAM SINE Alu 50 117 -16 242 273 0 0 chr4 106718681 106718747 -77569915 + (TATATG)n Simple_repeat Simple_repeat 4 69 0 404 232 14 28 chr4 106718747 106718889 -77569773 + L1MC4 LINE L1 7902 8041 -1 2533 55 0 0 chr4 106719036 106719347 -77569315 - AluY SINE Alu 0 311 1 570 280 47 9 chr4 106719570 106719942 -77568720 - LTR16C LTR ERVL 0 491 73 1817 142 46 16 chr4 106721492 106721815 -77566847 + MER1B DNA MER1_type 5 337 0 455 257 0 0 chr4 106722046 106722159 -77566503 + MIR SINE MIR 102 214 -48 1916 136 72 120 chr4 106722159 106722338 -77566324 + L1MB3 LINE L1 5652 5838 -345 920 122 0 0 chr4 106722338 106722469 -77566193 + FLAM_C SINE Alu 1 131 -2 1916 136 72 120 chr4 106722469 106722501 -77566161 + L1MB3 LINE L1 5838 5870 -313 1865 145 0 0 chr4 106722501 106722756 -77565906 + AluSx SINE Alu 1 255 -57 1916 136 72 120 chr4 106722756 106723100 -77565562 + L1MB3 LINE L1 5870 6181 -2 212 270 45 45 chr4 106723506 106723595 -77565067 + MER5C DNA MER1_type 2 90 -234 359 310 10 0 chr4 106723778 106723978 -77564684 + L1ME LINE L1 4408 4609 -1537 21 0 0 0 chr4 106724320 106724341 -77564321 + AT_rich Low_complexity Low_complexity 1 21 0 449 271 81 36 chr4 106724342 106724648 -77564014 + L1ME LINE L1 5349 5666 -455 235 290 30 0 chr4 106724647 106724747 -77563915 + L1MEd LINE L1 2 104 -6015 * 206 156 22 0 chr4 106724754 106724799 -77563863 + GA-rich Low_complexity Low_complexity 1 46 0 440 235 104 49 chr4 106725055 106725238 -77563424 - L1MC4a LINE L1 -1892 5916 5724 465 229 45 121 chr4 106725250 106725335 -77563327 - MLT1C LTR MaLR -170 297 207 2461 70 3 0 chr4 106725335 106725634 -77563028 - AluSp SINE Alu -13 300 1 465 229 45 121 chr4 106725634 106725864 -77562798 - MLT1C LTR MaLR -260 207 1 699 302 86 20 chr4 106725864 106726119 -77562543 - L2 LINE L2 -994 2320 2049 288 351 18 9 chr4 106726094 106726208 -77562454 + L2 LINE L2 3193 3307 -6 * 233 191 0 170 chr4 106726220 106726314 -77562348 - L2 LINE L2 -1246 2068 1991 1081 299 36 5 chr4 106726832 106727217 -77561445 + HAL1 LINE L1 4 400 -2107 1940 228 95 17 chr4 106727274 106728103 -77560559 + HAL1 LINE L1 563 1488 -1019 345 206 54 109 chr4 106728116 106728192 -77560470 + L1MC5 LINE L1 7709 7788 -173 1869 169 26 0 chr4 106728192 106728494 -77560168 + AluJo SINE Alu 1 310 -2 345 206 54 109 chr4 106728494 106728601 -77560061 + L1MC5 LINE L1 7788 7882 -79 610 180 47 20 chr4 106728667 106728817 -77559845 + HAL1 LINE L1 1473 1626 -881 396 329 14 7 chr4 106728817 106728963 -77559699 - L2 LINE L2 -1755 1559 1413 262 401 6 12 chr4 106729105 106729272 -77559390 - L2 LINE L2 -219 3053 2888 1582 156 7 22 chr4 106729283 106729552 -77559110 + AluJb SINE Alu 1 265 -47 2253 104 17 0 chr4 106729691 106730020 -77558642 + AluSx SINE Alu 1 518 -54 1182 77 6 16 chr4 106730020 106730202 -77558460 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2253 104 17 0 chr4 106730202 106730258 -77558404 + AluSx SINE Alu 518 572 0 209 225 0 0 chr4 106731804 106731844 -77556818 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 668 238 114 0 chr4 106733269 106733462 -77555200 + MER58C DNA MER1_type 1 215 0 1664 186 0 24 chr4 106733586 106733882 -77554780 + AluJo SINE Alu 1 289 -23 2280 91 0 10 chr4 106733895 106734191 -77554471 + AluSc SINE Alu 3 295 -14 416 267 128 11 chr4 106734208 106734388 -77554274 - MIR SINE MIR -49 213 13 327 364 93 18 chr4 106734492 106734947 -77553715 - L2 LINE L2 -219 3053 2565 1754 172 3 7 chr4 106735461 106735746 -77552916 + AluJo SINE Alu 1 284 -28 27 0 0 0 chr4 106735752 106735779 -77552883 + AT_rich Low_complexity Low_complexity 1 27 0 2194 84 28 0 chr4 106736160 106736447 -77552215 - AluSg SINE Alu -15 295 1 21 0 0 0 chr4 106738145 106738166 -77550496 + AT_rich Low_complexity Low_complexity 1 21 0 2296 155 19 43 chr4 106738636 106739119 -77549543 + L1MB3 LINE L1 5706 6176 -7 2364 74 17 0 chr4 106739161 106739457 -77549205 + AluSp SINE Alu 1 301 -12 342 291 155 20 chr4 106739845 106739993 -77548669 - MIR SINE MIR -14 248 81 201 273 131 10 chr4 106740268 106740367 -77548295 + L3b LINE CR1 1355 1465 -118 201 355 123 14 chr4 106744561 106744699 -77543963 - L2 LINE L2 -1 3271 3119 615 182 8 25 chr4 106747060 106747181 -77541481 - FLAM_C SINE Alu -11 132 14 875 218 53 0 chr4 106747233 106747421 -77541241 + MER20 DNA MER1_type 12 209 -10 276 354 111 30 chr4 106748225 106748423 -77540239 - L2 LINE L2 -219 3053 2840 180 303 92 9 chr4 106748523 106748632 -77540030 + L2 LINE L2 3092 3209 -104 456 279 174 51 chr4 106750122 106750438 -77538224 + MLT1J2 LTR MaLR 1 355 -95 288 0 0 0 chr4 106750468 106750500 -77538162 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 207 114 0 0 chr4 106750521 106750556 -77538106 + (TTGG)n Simple_repeat Simple_repeat 2 36 0 1898 143 7 3 chr4 106751491 106751778 -77536884 + AluJb SINE Alu 1 288 -24 288 221 156 0 chr4 106757022 106757099 -77531563 + L2 LINE L2 3188 3276 -37 727 157 6 84 chr4 106757341 106757507 -77531155 + MLT1A1 LTR MaLR 1 153 -212 316 224 60 0 chr4 106757526 106757593 -77531069 + MLT1J2 LTR MaLR 397 467 0 278 369 107 8 chr4 106757689 106757811 -77530851 + L2 LINE L2 3137 3270 -2 486 325 24 76 chr4 106758253 106758502 -77530160 - L2 LINE L2 -38 3234 2999 1504 167 23 30 chr4 106759161 106759424 -77529238 - AluJo SINE Alu -30 282 22 1244 178 0 29 chr4 106759833 106760075 -77528587 - MER46A DNA MER2_type 0 236 2 2618 206 10 2 chr4 106760288 106760802 -77527860 + LTR53 LTR ERVL 2 519 0 2095 154 0 20 chr4 106760860 106761203 -77527459 + MER1B DNA MER1_type 2 337 0 270 282 203 61 chr4 106762087 106762200 -77526462 - L2 LINE L2 0 3272 3128 1968 104 4 4 chr4 106762200 106762460 -77526202 + AluSc SINE Alu 34 293 -16 270 282 203 61 chr4 106762460 106762509 -77526153 - L2 LINE L2 -144 3128 3087 1325 222 68 53 chr4 106762652 106763107 -77525555 + MLT1C LTR MaLR 6 467 0 268 276 75 52 chr4 106763212 106763346 -77525316 + MIR3 SINE MIR 13 149 -59 312 313 15 69 chr4 106764464 106764595 -77524067 + MIR SINE MIR 20 143 -119 2390 75 0 35 chr4 106764600 106764918 -77523744 + AluY SINE Alu 1 307 -4 189 107 0 0 chr4 106766448 106766476 -77522186 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 650 264 0 0 chr4 106766493 106766633 -77522029 + MIR SINE MIR 91 230 -32 186 133 0 0 chr4 106766633 106766663 -77521999 + (ATG)n Simple_repeat Simple_repeat 2 31 0 26 64 0 0 chr4 106766685 106766732 -77521930 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr4 106767537 106767558 -77521104 + AT_rich Low_complexity Low_complexity 1 21 0 4194 140 17 24 chr4 106767627 106768384 -77520278 - L1MA8 LINE L1 -3 6288 5537 670 316 84 4 chr4 106770773 106771036 -77517626 - L3 LINE CR1 -2 1575 1292 371 333 28 28 chr4 106771399 106771540 -77517122 - MIR SINE MIR -91 171 31 689 183 57 172 chr4 106771638 106772075 -77516587 + MLT1B LTR MaLR 1 387 -3 261 0 0 0 chr4 106773258 106773287 -77515375 + (CA)n Simple_repeat Simple_repeat 2 30 0 748 247 126 0 chr4 106773413 106773644 -77515018 + MIR SINE MIR 3 262 0 186 71 0 0 chr4 106773904 106773932 -77514730 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 673 272 56 49 chr4 106775024 106775327 -77513335 - L1ME4a LINE L1 -218 5903 5595 2179 120 0 0 chr4 106775327 106775628 -77513034 + AluSx SINE Alu 5 305 -7 673 272 56 49 chr4 106775628 106775750 -77512912 - L1ME4a LINE L1 -526 5595 5475 227 170 0 19 chr4 106776453 106776506 -77512156 + GA-rich Low_complexity Low_complexity 4 55 0 1979 164 39 31 chr4 106778453 106778630 -77510032 + MLT1B LTR MaLR 1 175 -215 2195 99 3 10 chr4 106778630 106778934 -77509728 + AluY SINE Alu 1 302 -9 1979 164 39 31 chr4 106778934 106779141 -77509521 + MLT1B LTR MaLR 175 388 -2 268 313 102 27 chr4 106780495 106780642 -77508020 - L2 LINE L2 -4 3309 3152 548 229 46 33 chr4 106780765 106780918 -77507744 + MLT1H LTR MaLR 2 156 -393 1420 77 58 0 chr4 106780961 106781169 -77507493 + L1MA1 LINE L1 6079 6298 -4 22 0 0 0 chr4 106781169 106781191 -77507471 + AT_rich Low_complexity Low_complexity 1 22 0 186 222 0 0 chr4 106782463 106782517 -77506145 + (TA)n Simple_repeat Simple_repeat 1 54 0 1798 161 0 27 chr4 106783093 106783385 -77505277 + AluJo SINE Alu 1 284 -28 584 52 63 29 chr4 106783386 106783560 -77505102 + (TA)n Simple_repeat Simple_repeat 1 180 0 36 23 0 0 chr4 106783560 106783603 -77505059 + AT_rich Low_complexity Low_complexity 1 43 0 315 0 0 0 chr4 106784352 106784387 -77504275 + (CA)n Simple_repeat Simple_repeat 1 35 0 664 217 8 0 chr4 106785373 106785502 -77503160 - FLAM_C SINE Alu -3 130 1 1162 284 69 23 chr4 106785698 106786089 -77502573 + MLT1I LTR MaLR 1 409 0 1849 125 32 4 chr4 106786528 106786809 -77501853 - AluSx SINE Alu -23 289 1 255 318 130 45 chr4 106786824 106787047 -77501615 + L2 LINE L2 2069 2310 -1004 5135 239 28 16 chr4 106787304 106788785 -77499877 + L1M4 LINE L1 3746 5244 -902 270 304 23 0 chr4 106788804 106788975 -77499687 + (TA)n Simple_repeat Simple_repeat 1 175 0 1571 251 80 91 chr4 106789045 106790226 -77498436 + HAL1 LINE L1 1260 2427 -80 938 289 98 11 chr4 106791321 106791789 -77496873 + MLT1J LTR MaLR 1 509 -2 250 260 14 14 chr4 106794387 106794460 -77494202 - L2 LINE L2 0 3272 3200 25 31 0 0 chr4 106794536 106794568 -77494094 + AT_rich Low_complexity Low_complexity 1 32 0 195 379 0 0 chr4 106794952 106795039 -77493623 + L2 LINE L2 3226 3312 -1 1992 143 7 0 chr4 106795828 106796122 -77492540 + AluSx SINE Alu 1 296 -16 2517 121 12 12 chr4 106796846 106797250 -77491412 + L1PA15 LINE L1 5761 6164 -1 516 146 16 8 chr4 106797264 106797387 -77491275 + (TA)n Simple_repeat Simple_repeat 2 125 0 25 31 0 0 chr4 106797662 106797694 -77490968 + AT_rich Low_complexity Low_complexity 1 32 0 327 263 93 25 chr4 106797961 106798079 -77490583 + MIR SINE MIR 16 141 -67 23 0 0 0 chr4 106798086 106798109 -77490553 + AT_rich Low_complexity Low_complexity 1 23 0 721 291 91 39 chr4 106798177 106798649 -77490013 - MLT1G3 LTR MaLR 0 595 13 1505 256 105 24 chr4 106799366 106799831 -77488831 + MLT1G1 LTR MaLR 79 581 -14 27 29 0 0 chr4 106800587 106800621 -77488041 + AT_rich Low_complexity Low_complexity 1 34 0 189 74 0 0 chr4 106800655 106800682 -77487980 + (TA)n Simple_repeat Simple_repeat 1 27 0 339 327 19 0 chr4 106801767 106801874 -77486788 + L2 LINE L2 3160 3268 -4 415 266 94 82 chr4 106802041 106802308 -77486354 + L2 LINE L2 3044 3313 0 542 62 0 12 chr4 106802308 106802388 -77486274 + (GGAA)n Simple_repeat Simple_repeat 4 82 0 1701 213 73 18 chr4 106802435 106802876 -77485786 + MLT1C LTR MaLR 3 467 0 30 27 0 0 chr4 106803320 106803357 -77485305 + AT_rich Low_complexity Low_complexity 1 37 0 183 302 79 43 chr4 106803453 106803592 -77485070 - MIR SINE MIR -2 260 117 1385 158 81 57 chr4 106803672 106804007 -77484655 + MER2 DNA MER2_type 2 344 0 355 330 10 0 chr4 106804020 106804123 -77484539 - MIR SINE MIR -156 106 3 225 0 0 0 chr4 106804415 106804440 -77484222 + (T)n Simple_repeat Simple_repeat 1 25 0 267 250 83 0 chr4 106805246 106805318 -77483344 - MIR3 SINE MIR -13 195 118 180 0 0 0 chr4 106807905 106807925 -77480737 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 2306 98 0 0 chr4 106808114 106808419 -77480243 - AluSc SINE Alu -4 305 1 25 65 0 0 chr4 106808573 106808619 -77480043 + AT_rich Low_complexity Low_complexity 1 46 0 187 298 0 18 chr4 106809151 106809208 -77479454 - L3b LINE CR1 -192 1391 1336 279 239 184 30 chr4 106810012 106810213 -77478449 - MARNA DNA Mariner -66 520 289 268 301 11 0 chr4 106810424 106810517 -77478145 + MARNA DNA Mariner 479 572 -14 2293 92 0 0 chr4 106810715 106811010 -77477652 + AluSp SINE Alu 1 295 -18 405 303 30 23 chr4 106811033 106811165 -77477497 - MER5A DNA MER1_type -53 136 4 3074 112 74 1 chr4 106811268 106811800 -77476862 + L1PB4 LINE L1 5221 5789 -367 249 276 35 14 chr4 106811815 106811960 -77476702 + (TA)n Simple_repeat Simple_repeat 1 148 0 297 0 0 0 chr4 106812054 106812087 -77476575 + (CA)n Simple_repeat Simple_repeat 2 34 0 2089 148 22 14 chr4 106812087 106812446 -77476216 + L1PB4 LINE L1 5794 6155 -1 12272 146 13 21 chr4 106812611 106814710 -77473952 - Ricksha_c DNA DNA -13 2033 10 2723 225 35 3 chr4 106815302 106815866 -77472796 + MER82 DNA MER2_type 7 588 -65 1998 164 99 8 chr4 106815873 106816257 -77472405 - MSTA LTR MaLR -9 419 1 388 171 14 0 chr4 106816258 106816328 -77472334 + MER82 DNA MER2_type 582 652 -1 38 52 0 13 chr4 106816900 106816916 -77471746 + AT_rich Low_complexity Low_complexity 1 16 -60 2117 108 0 10 chr4 106816916 106817213 -77471449 + AluSc SINE Alu 1 294 -15 38 52 0 13 chr4 106817213 106817273 -77471389 + AT_rich Low_complexity Low_complexity 16 76 0 191 296 42 0 chr4 106817398 106817469 -77471193 - MIR3 SINE MIR -6 202 129 311 368 60 28 chr4 106817789 106818039 -77470623 + MIR SINE MIR 2 259 -3 1228 183 20 28 chr4 106820690 106820942 -77467720 + L1M4 LINE L1 18 267 -6275 21 57 0 0 chr4 106821042 106821077 -77467585 + AT_rich Low_complexity Low_complexity 1 35 0 2343 233 52 50 chr4 106821092 106821788 -77466874 + L1M4 LINE L1 271 967 -5575 27 49 0 0 chr4 106823075 106823116 -77465546 + AT_rich Low_complexity Low_complexity 1 41 0 21 57 0 0 chr4 106823679 106823714 -77464948 + AT_rich Low_complexity Low_complexity 1 35 0 2900 162 35 11 chr4 106823715 106824283 -77464379 - L1MB3 LINE L1 -10 6173 5592 965 155 0 0 chr4 106825185 106825327 -77463335 - Tigger3b DNA MER2_type 0 1231 1090 207 179 36 36 chr4 106825327 106825411 -77463251 + (TTATA)n Simple_repeat Simple_repeat 1 84 0 327 212 0 0 chr4 106825418 106825503 -77463159 + (TA)n Simple_repeat Simple_repeat 1 85 0 5459 135 98 10 chr4 106825505 106826505 -77462157 - Tigger3b DNA MER2_type -143 1088 1 251 253 329 32 chr4 106826720 106826878 -77461784 + MIR SINE MIR 1 205 -57 272 305 12 12 chr4 106827234 106827316 -77461346 + MIR3 SINE MIR 125 206 -2 1287 162 50 8 chr4 106828854 106829113 -77459549 - L1MA9 LINE L1 -38 6274 6005 23 0 0 0 chr4 106829483 106829506 -77459156 + AT_rich Low_complexity Low_complexity 1 23 0 1269 214 41 0 chr4 106829543 106829814 -77458848 + L3b LINE CR1 1132 1413 -170 220 200 0 0 chr4 106830171 106830211 -77458451 + GA-rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr4 106830964 106830986 -77457676 + AT_rich Low_complexity Low_complexity 1 22 0 467 206 15 66 chr4 106831152 106831288 -77457374 + MER94 DNA DNA 5 133 -1 189 74 0 0 chr4 106832067 106832094 -77456568 + (A)n Simple_repeat Simple_repeat 1 27 0 26 82 0 0 chr4 106832665 106832726 -77455936 + AT_rich Low_complexity Low_complexity 1 61 0 1777 105 91 14 chr4 106833139 106833415 -77455247 + AluSx SINE Alu 1 297 -15 275 337 191 14 chr4 106833705 106834067 -77454595 - L2 LINE L2 -925 2389 1964 191 152 22 0 chr4 106834167 106834213 -77454449 + (TA)n Simple_repeat Simple_repeat 1 47 0 203 354 0 0 chr4 106835027 106835092 -77453570 - L2 LINE L2 -4 3309 3245 296 378 0 20 chr4 106835163 106835261 -77453401 + L2 LINE L2 3000 3095 -177 286 367 36 7 chr4 106836098 106836237 -77452425 + MIR3 SINE MIR 1 143 -65 1799 230 88 20 chr4 106836387 106836427 -77452235 - MLT2B1 LTR ERVL 0 520 484 243 0 0 0 chr4 106836427 106836454 -77452208 + (CA)n Simple_repeat Simple_repeat 2 28 0 1799 230 88 20 chr4 106836454 106836900 -77451762 - MLT2B1 LTR ERVL -36 484 1 13698 148 22 6 chr4 106836900 106839088 -77449574 - ERVL-B1 LTR ERVL -7 5757 3534 605 200 14 14 chr4 106839082 106839227 -77449435 - HERVL-B1 LTR ERVL -5509 145 1 * 1942 211 124 13 chr4 106839227 106839695 -77448967 - MLT2B1 LTR ERVL 0 520 1 2530 59 0 0 chr4 106839863 106840166 -77448496 + AluY SINE Alu 1 303 -8 336 232 0 130 chr4 106840312 106840450 -77448212 - MIR SINE MIR -69 193 74 486 108 0 0 chr4 106840520 106840594 -77448068 + (TA)n Simple_repeat Simple_repeat 2 75 0 286 309 40 56 chr4 106840631 106840757 -77447905 + L2 LINE L2 3141 3264 -8 270 255 0 0 chr4 106840964 106841015 -77447647 - L2 LINE L2 -12 3260 3210 324 0 0 0 chr4 106842143 106842179 -77446483 + (TG)n Simple_repeat Simple_repeat 2 37 0 27 0 0 0 chr4 106842548 106842575 -77446087 + AT_rich Low_complexity Low_complexity 1 27 0 461 335 55 6 chr4 106842714 106842896 -77445766 + MIR3 SINE MIR 9 199 -9 219 291 212 24 chr4 106843619 106843784 -77444878 - MIR SINE MIR -44 218 23 193 383 114 10 chr4 106844133 106844326 -77444336 + L2 LINE L2 2545 2757 -557 671 204 61 41 chr4 106844421 106844617 -77444045 + MIR SINE MIR 63 262 0 293 304 14 0 chr4 106844735 106844804 -77443858 - MIR SINE MIR -188 74 5 2277 106 0 0 chr4 106846551 106846853 -77441809 - AluSx SINE Alu -10 302 1 1618 167 20 37 chr4 106847298 106847598 -77441064 + AluSx SINE Alu 1 295 -17 2518 66 0 0 chr4 106847750 106848054 -77440608 - AluY SINE Alu -7 304 1 2372 87 0 0 chr4 106848289 106848587 -77440075 + AluSx SINE Alu 1 298 -14 2080 127 3 0 chr4 106848905 106849214 -77439448 + AluSx SINE Alu 1 310 0 324 313 94 0 chr4 106849533 106849661 -77439001 + L3b LINE CR1 1295 1434 -149 338 281 82 67 chr4 106849927 106850062 -77438600 - L2 LINE L2 0 3272 3136 464 323 110 36 chr4 106850372 106850762 -77437900 - L2 LINE L2 -572 2742 2324 21 57 0 0 chr4 106850915 106850950 -77437712 + AT_rich Low_complexity Low_complexity 1 35 0 450 0 0 0 chr4 106851576 106851626 -77437036 + (TG)n Simple_repeat Simple_repeat 2 51 0 469 276 144 11 chr4 106852169 106852343 -77436319 + MIR SINE MIR 66 262 0 1210 169 13 21 chr4 106853675 106853912 -77434750 + MER46A DNA MER2_type 1 235 -1 6923 24 0 0 chr4 106854989 106855792 -77432870 - L1PA2 LINE L1 0 6155 5353 6658 34 0 0 chr4 106855787 106856583 -77432079 + L1P LINE L1 3650 4445 -1701 * 310 282 0 0 chr4 106856785 106856856 -77431806 - L2 LINE L2 0 3313 3243 497 300 117 9 chr4 106856933 106857163 -77431499 - MIR SINE MIR -4 258 4 1992 140 17 0 chr4 106858018 106858311 -77430351 + AluJb SINE Alu 5 302 -10 210 347 14 0 chr4 106858463 106858535 -77430127 - MIR3 SINE MIR -17 191 119 198 326 121 37 chr4 106858773 106858963 -77429699 - L2 LINE L2 -194 3078 2873 262 257 35 62 chr4 106859812 106859925 -77428737 + MIR SINE MIR 88 197 -65 208 267 0 50 chr4 106860008 106860068 -77428594 - MIR3 SINE MIR -11 197 141 2392 83 0 3 chr4 106862186 106862487 -77426175 + AluSx SINE Alu 1 300 -12 227 245 38 0 chr4 106862504 106862557 -77426105 + L2 LINE L2 3253 3307 -6 348 205 25 57 chr4 106862577 106862699 -77425963 - MER110 LTR ERV1 -51 440 323 596 373 97 15 chr4 106862780 106863236 -77425426 - L3 LINE CR1 -117 1460 968 2218 108 0 0 chr4 106863911 106864207 -77424455 + AluY SINE Alu 1 296 -15 1710 189 24 46 chr4 106864839 106865210 -77423452 - MLT1A1 LTR MaLR -2 363 1 1079 200 148 12 chr4 106865385 106865635 -77423027 + AluJo SINE Alu 1 284 -18 1771 87 0 0 chr4 106915924 106916143 -77372519 + AluSp SINE Alu 64 282 -31 2194 222 78 22 chr4 106916143 106916910 -77371752 + MER11B LTR ERVK 2 903 -333 374 336 113 40 chr4 106917596 106917843 -77370819 + L2 LINE L2 1209 1473 -1841 812 167 0 0 chr4 106918014 106918140 -77370522 - FLAM_C SINE Alu -7 126 1 2075 112 30 0 chr4 106918539 106918834 -77369828 + AluSq SINE Alu 1 304 -9 189 0 0 0 chr4 106919071 106919092 -77369570 + (T)n Simple_repeat Simple_repeat 1 21 0 21 36 0 0 chr4 106919116 106919144 -77369518 + AT_rich Low_complexity Low_complexity 1 28 0 1698 147 39 4 chr4 106919524 106919803 -77368859 - AluJb SINE Alu -3 309 21 2326 75 9 35 chr4 106919831 106920150 -77368512 - AluY SINE Alu 0 311 1 1927 156 3 13 chr4 106920155 106920470 -77368192 - AluJo SINE Alu 0 312 1 296 271 17 59 chr4 106920554 106920672 -77367990 + HsTC2 DNA Tc2 14 126 -1772 2125 159 122 22 chr4 106920697 106921156 -77367506 + MLT1D LTR MaLR 1 505 0 390 337 72 72 chr4 106921446 106921808 -77366854 - L2 LINE L2 -5 3267 2906 1740 177 79 64 chr4 106922348 106922816 -77365846 - MLT1D LTR MaLR 0 505 31 292 402 0 0 chr4 106922818 106922940 -77365722 - L2 LINE L2 -511 2803 2682 464 152 60 12 chr4 106922996 106923105 -77365557 - L1MD3 LINE L1 -7 7980 6120 1447 94 47 38 chr4 106923118 106923330 -77365332 - AluSq SINE Alu -99 214 1 2206 208 25 38 chr4 106923332 106923769 -77364893 - L1MD3 LINE L1 -110 7885 7455 1151 185 108 51 chr4 106923769 106923826 -77364836 - MLT1A2 LTR MaLR 0 374 322 1843 153 7 27 chr4 106923826 106924127 -77364535 - AluJb SINE Alu -15 297 3 1151 185 108 51 chr4 106924127 106924420 -77364242 - MLT1A2 LTR MaLR -52 322 4 2206 208 25 38 chr4 106924420 106924530 -77364132 - L1MD3 LINE L1 -540 7455 7345 1661 179 14 7 chr4 106924530 106924810 -77363852 + AluJo SINE Alu 1 282 -30 300 264 0 0 chr4 106924828 106924900 -77363762 - MLT1F1 LTR MaLR -495 72 1 564 220 68 113 chr4 106924901 106924975 -77363687 - L1MD3 LINE L1 -718 7277 7201 2228 111 3 0 chr4 106924975 106925273 -77363389 + AluSg SINE Alu 1 299 -11 564 220 68 113 chr4 106925273 106925349 -77363313 - L1MD3 LINE L1 -794 7201 7123 1855 191 6 0 chr4 106925349 106925663 -77362999 - 7SLRNA srpRNA srpRNA 0 320 5 564 220 68 113 chr4 106925663 106925820 -77362842 - L1MD3 LINE L1 -872 7123 6983 1015 187 124 18 chr4 106925833 106926058 -77362604 - AluJo SINE Alu -30 282 34 1780 201 39 18 chr4 106926058 106926446 -77362216 - L1MD3 LINE L1 -1006 6989 6594 2779 247 76 15 chr4 106926448 106927447 -77361215 - L1MC3 LINE L1 -743 6214 5997 27 0 0 0 chr4 106927466 106927493 -77361169 + AT_rich Low_complexity Low_complexity 1 27 0 2456 173 38 38 chr4 106927499 106928047 -77360615 - MER11A LTR ERVK 0 1266 719 4061 117 53 0 chr4 106928204 106928809 -77359853 + MER39B LTR ERV1 14 650 -3 4122 236 39 33 chr4 106928813 106928894 -77359768 - L1MC3 LINE L1 -1052 5905 5826 1973 118 35 3 chr4 106928894 106929182 -77359480 - AluSq SINE Alu -16 297 1 4122 236 39 33 chr4 106929182 106930449 -77358213 - L1MC3 LINE L1 -1131 5826 4550 321 260 52 0 chr4 106930458 106930535 -77358127 - Charlie1a DNA MER1_type -1002 453 373 1043 257 16 12 chr4 106930574 106930819 -77357843 - Charlie1a DNA MER1_type -1209 246 1 547 231 0 8 chr4 106930830 106930947 -77357715 - MLT1D LTR MaLR -2 465 350 1263 174 105 43 chr4 106930953 106931296 -77357366 - MSTD LTR MaLR -2 394 1 628 239 96 79 chr4 106931301 106931656 -77357006 - MLT1D LTR MaLR -144 361 1 343 219 53 35 chr4 106931677 106931791 -77356871 - L1MC3 LINE L1 -5131 1828 1713 364 327 68 12 chr4 106931863 106932025 -77356637 - L1MC3 LINE L1 -5231 1628 1458 632 230 223 12 chr4 106932106 106932519 -77356143 + L1ME4a LINE L1 5618 6117 -4 652 231 59 27 chr4 106932909 106933112 -77355550 + MER33 DNA MER1_type 1 183 -86 702 260 125 0 chr4 106934188 106934396 -77354266 + MIR SINE MIR 1 234 -28 28 0 0 0 chr4 106934397 106934425 -77354237 + AT_rich Low_complexity Low_complexity 1 28 0 416 258 236 33 chr4 106934844 106935243 -77353419 + L1MC4a LINE L1 5445 5924 -1884 782 173 6 51 chr4 106935468 106935624 -77353038 + AluJo SINE Alu 1 149 -163 1052 152 4 113 chr4 106935629 106935859 -77352803 + AluJo SINE Alu 81 285 -27 1599 248 69 27 chr4 106935882 106936402 -77352260 - MLT1F LTR MaLR 0 542 1 1270 146 90 5 chr4 106937941 106938153 -77350509 - AluJb SINE Alu -15 297 68 198 322 0 17 chr4 106938344 106938403 -77350259 + L3 LINE CR1 1467 1524 -53 237 292 14 0 chr4 106938724 106938796 -77349866 - MLT1J LTR MaLR -331 180 108 208 298 153 38 chr4 106938893 106939024 -77349638 - MER5A DNA MER1_type -5 184 39 252 307 95 36 chr4 106939040 106939177 -77349485 - MIR3 SINE MIR -49 159 15 381 262 97 0 chr4 106939811 106939914 -77348748 - MER119 DNA MER1_type -449 134 22 2267 82 0 0 chr4 106940053 106940356 -77348306 - AluY SINE Alu 0 303 1 2830 3 0 0 chr4 106940691 106940994 -77347668 + AluY SINE Alu 1 303 -8 25 51 0 0 chr4 106941492 106941531 -77347131 + AT_rich Low_complexity Low_complexity 1 39 0 263 59 0 0 chr4 106941672 106941706 -77346956 - U2 snRNA snRNA -154 34 1 398 357 147 22 chr4 106942261 106942580 -77346082 - L2 LINE L2 -542 2772 2414 489 117 13 0 chr4 106942763 106942840 -77345822 + AluJ/FLAM SINE Alu 1 78 -234 353 345 60 36 chr4 106943074 106943375 -77345287 - L2 LINE L2 -1 3312 3005 765 277 121 10 chr4 106943383 106944006 -77344656 + L1ME3A LINE L1 4972 5658 -512 210 283 38 0 chr4 106944010 106944063 -77344599 + MER5A DNA MER1_type 21 75 -114 * 382 242 50 30 chr4 106944056 106944155 -77344507 - MER5A DNA MER1_type -80 109 9 700 259 91 27 chr4 106944343 106944640 -77344022 + L1ME3A LINE L1 5637 5952 -218 227 217 29 0 chr4 106944818 106944887 -77343775 + (CATATA)n Simple_repeat Simple_repeat 3 73 0 1762 160 0 7 chr4 106944909 106945197 -77343465 - AluJb SINE Alu -26 286 1 643 273 222 29 chr4 106945306 106945738 -77342924 - MLT1H LTR MaLR -46 496 1 190 91 0 68 chr4 106945908 106945952 -77342710 + (CATA)n Simple_repeat Simple_repeat 3 43 0 332 202 58 4 chr4 106946075 106946143 -77342519 + MER20 DNA MER1_type 1 49 -170 280 158 61 12 chr4 106946637 106946719 -77341943 + (TTATA)n Simple_repeat Simple_repeat 4 89 0 334 232 167 24 chr4 106947083 106947251 -77341411 - L1ME4a LINE L1 -215 5906 5715 216 0 0 0 chr4 106947528 106947552 -77341110 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 2116 117 0 3 chr4 106948177 106948477 -77340185 - AluSx SINE Alu -13 299 1 585 253 146 5 chr4 106948630 106948833 -77339829 - MIR SINE MIR -12 250 19 217 262 0 0 chr4 106949083 106949125 -77339537 + MER91 DNA MER1_type 80 121 -19 1315 312 109 67 chr4 106949266 106949713 -77338949 - Charlie2a DNA MER1_type -9 2853 2355 2158 129 10 0 chr4 106949713 106950022 -77338640 - AluSx SINE Alu 0 312 1 1315 312 109 67 chr4 106950022 106950384 -77338278 - Charlie2a DNA MER1_type -507 2355 2010 254 327 19 48 chr4 106950523 106950592 -77338070 - MIR SINE MIR -62 146 79 2854 10 0 0 chr4 106950592 106950902 -77337760 + AluYa5 SINE Alu 1 310 -1 254 327 19 48 chr4 106950902 106950936 -77337726 - MIR SINE MIR -129 79 46 1624 179 19 41 chr4 106951043 106951362 -77337300 - AluJb SINE Alu 0 312 1 380 216 45 36 chr4 106951370 106951481 -77337181 - Charlie2a DNA MER1_type -1205 1657 1546 * 479 242 158 15 chr4 106951475 106951735 -77336927 - Charlie2a DNA MER1_type -1802 1060 764 2233 107 0 13 chr4 106951738 106952038 -77336624 + AluSx SINE Alu 3 298 -14 855 223 70 15 chr4 106952173 106952415 -77336247 - MIR SINE MIR -4 258 13 491 299 145 19 chr4 106952461 106952668 -77335994 - Charlie2a DNA MER1_type -2518 264 32 887 175 0 32 chr4 106953316 106953470 -77335192 - AluJo SINE Alu -163 149 1 229 273 0 0 chr4 106953580 106953624 -77335038 - AluJ/monomer SINE Alu -258 45 2 211 149 0 30 chr4 106953718 106953785 -77334877 + (TTTTA)n Simple_repeat Simple_repeat 3 67 0 2327 91 10 7 chr4 106954206 106954514 -77334148 - AluSc SINE Alu 0 309 1 180 77 0 0 chr4 106955486 106955512 -77333150 + (GGA)n Simple_repeat Simple_repeat 2 27 0 1201 120 10 16 chr4 106956167 106956359 -77332303 - MER46B DNA MER2_type 0 236 46 1774 161 26 3 chr4 106956362 106956667 -77331995 - AluJb SINE Alu 0 312 1 243 0 0 0 chr4 106956672 106956699 -77331963 + (TA)n Simple_repeat Simple_repeat 2 28 0 251 216 34 11 chr4 106956699 106956787 -77331875 - L1MC4 LINE L1 -1339 6703 6614 276 77 0 0 chr4 106956788 106956827 -77331835 + (TA)n Simple_repeat Simple_repeat 1 39 0 1282 120 0 6 chr4 106956833 106957016 -77331646 - AluY SINE Alu -30 281 100 1007 136 65 0 chr4 106957129 106957298 -77331364 - MER46B DNA MER2_type -180 56 2 2728 190 109 15 chr4 106957557 106958274 -77330388 - L1MC4 LINE L1 -5 8037 7254 2279 106 0 3 chr4 106958319 106958622 -77330040 + AluSx SINE Alu 1 302 -10 402 254 35 0 chr4 106958848 106958962 -77329700 + MIR SINE MIR 145 262 0 455 299 49 18 chr4 106958976 106959140 -77329522 - MIR SINE MIR -62 200 32 182 298 87 39 chr4 106959908 106960012 -77328650 - MIR SINE MIR -84 178 70 2335 105 0 0 chr4 106960636 106960940 -77327722 + AluSq SINE Alu 4 307 -6 4162 150 56 31 chr4 106961841 106963122 -77325540 - L1MB7 LINE L1 0 6184 4869 1378 172 32 126 chr4 106963136 106963606 -77325056 - L1MB5 LINE L1 -8 6166 5741 202 279 118 29 chr4 106963933 106964001 -77324661 - MIR SINE MIR -169 93 20 230 247 111 25 chr4 106964274 106964355 -77324307 + L2 LINE L2 3184 3271 -1 299 261 14 0 chr4 106964525 106964594 -77324068 - MIR SINE MIR -99 163 94 1306 202 8 27 chr4 106966512 106966769 -77321893 - AluJo SINE Alu -59 253 2 232 309 44 0 chr4 106967298 106967366 -77321296 - L2 LINE L2 0 3313 3243 1887 91 129 0 chr4 106967382 106967645 -77321017 - AluSx SINE Alu -15 297 1 650 158 8 33 chr4 106967936 106968056 -77320606 + FLAM_C SINE Alu 14 130 -13 303 208 78 13 chr4 106968168 106968245 -77320417 + L1MC5 LINE L1 7831 7912 -49 375 256 81 25 chr4 106968761 106968921 -77319741 + L1ME4a LINE L1 5949 6117 -4 23 0 0 0 chr4 106968938 106968961 -77319701 + AT_rich Low_complexity Low_complexity 1 23 0 3873 125 28 8 chr4 106969108 106969708 -77318954 - LTR9 LTR ERV1 0 612 1 2186 98 3 7 chr4 106969867 106970164 -77318498 - AluSx SINE Alu -16 296 1 474 278 19 0 chr4 106970283 106970391 -77318271 + FLAM_A SINE Alu 5 114 -28 1219 183 9 9 chr4 106970775 106970994 -77317668 + MER58A DNA MER1_type 6 224 0 1426 237 129 4 chr4 106971316 106971720 -77316942 - L1ME3A LINE L1 -241 5929 5474 210 289 77 0 chr4 106971738 106971790 -77316872 - MIR SINE MIR -60 148 93 2058 110 0 23 chr4 106972113 106972413 -77316249 - AluY SINE Alu -18 293 1 21 57 0 0 chr4 106972679 106972714 -77315948 + AT_rich Low_complexity Low_complexity 1 35 0 479 224 112 0 chr4 106973129 106973236 -77315426 + FLAM_A SINE Alu 12 130 -12 5204 221 77 19 chr4 106973292 106974455 -77314207 + Tigger3b DNA MER2_type 1 1230 -1 2054 147 0 3 chr4 106974525 106974825 -77313837 - AluSx SINE Alu -13 299 1 1048 284 147 34 chr4 106974861 106975764 -77312898 - L2 LINE L2 -8 3305 2295 22 0 0 0 chr4 106975890 106975912 -77312750 + AT_rich Low_complexity Low_complexity 1 22 0 2181 121 0 13 chr4 106976104 106976280 -77312382 - AluSx SINE Alu -3 309 137 2270 77 10 7 chr4 106976280 106976577 -77312085 - AluSq SINE Alu -15 298 1 2181 121 0 13 chr4 106976577 106976713 -77311949 - AluSx SINE Alu -175 137 1 613 283 52 22 chr4 106977263 106977631 -77311031 - L1MC5 LINE L1 -271 7690 7312 298 171 38 165 chr4 106977777 106977935 -77310727 - L1MC4 LINE L1 -786 7256 7119 * 320 302 63 16 chr4 106977932 106978058 -77310604 + L1MC4a LINE L1 5774 5905 -1903 769 235 55 111 chr4 106978549 106979134 -77309528 + L1MC4a LINE L1 6542 7006 -802 1956 136 10 0 chr4 106980332 106980627 -77308035 - AluSx SINE Alu -14 298 1 2415 87 3 0 chr4 106980686 106980998 -77307664 - AluSp SINE Alu 0 313 1 1684 180 3 22 chr4 106981336 106981647 -77307015 + AluJb SINE Alu 1 305 -7 403 200 25 0 chr4 106981791 106981871 -77306791 + MIR SINE MIR 78 159 -103 1057 285 67 48 chr4 106981887 106982304 -77306358 - L2 LINE L2 -6 3307 2883 2457 74 0 13 chr4 106982444 106982755 -77305907 + AluY SINE Alu 1 307 -4 338 331 79 14 chr4 106983302 106983441 -77305221 - L2 LINE L2 -14 3258 3111 220 247 199 60 chr4 106983914 106984080 -77304582 - L2 LINE L2 -2 3311 3123 202 146 0 24 chr4 106984157 106984198 -77304464 + (TA)n Simple_repeat Simple_repeat 2 41 0 1873 142 3 42 chr4 106985702 106986013 -77302649 - AluJb SINE Alu -8 304 6 2343 96 0 3 chr4 106986024 106986326 -77302336 - AluSg SINE Alu -9 301 1 2288 90 0 0 chr4 106986338 106986626 -77302036 - AluSg SINE Alu -14 296 9 240 184 0 0 chr4 106987125 106987163 -77301499 - Alu SINE Alu -11 291 254 724 168 0 8 chr4 106987163 106987282 -77301380 - AluJb SINE Alu -194 118 1 285 190 0 0 chr4 106987322 106987380 -77301282 - L1MC5 LINE L1 -72 7889 7832 1924 132 7 33 chr4 106987411 106987715 -77300947 + AluSx SINE Alu 1 296 -16 3817 148 58 19 chr4 106988609 106989397 -77299265 + L1MA8 LINE L1 5472 6290 -1 1198 105 0 0 chr4 106989585 106989788 -77298874 - AluSg/x SINE Alu 0 336 134 2017 141 23 0 chr4 106990449 106990753 -77297909 - AluJb SINE Alu -1 311 1 744 172 23 0 chr4 106990793 106990921 -77297741 - U2 snRNA snRNA -1 187 57 2342 97 3 0 chr4 106992364 106992672 -77295990 + AluSp SINE Alu 1 309 -4 2354 90 0 3 chr4 106993374 106993684 -77294978 - AluSg SINE Alu -1 309 1 2433 71 3 3 chr4 106993693 106994003 -77294659 - AluY SINE Alu 0 311 2 356 293 198 0 chr4 106994075 106994191 -77294471 - MIR3 SINE MIR -34 174 36 186 133 0 0 chr4 106994402 106994432 -77294230 + (TG)n Simple_repeat Simple_repeat 2 31 0 642 200 0 39 chr4 106994545 106994675 -77293987 - FLAM_C SINE Alu -6 137 13 665 231 8 0 chr4 106994710 106994831 -77293831 + FLAM_A SINE Alu 1 122 -11 2054 134 0 3 chr4 106994841 106995139 -77293523 + AluSx SINE Alu 1 297 -15 414 174 58 12 chr4 106995354 106995440 -77293222 - L1ME LINE L1 -434 5687 5598 631 270 122 17 chr4 106996081 106996318 -77292344 + MIR SINE MIR 1 262 0 2342 102 0 0 chr4 106998598 106998902 -77289760 + AluSx SINE Alu 9 312 0 1991 119 3 32 chr4 106999145 106999457 -77289205 + AluSg SINE Alu 1 303 -7 1113 238 57 50 chr4 106999576 106999768 -77288894 + L1ME1 LINE L1 5709 5898 -268 1936 108 0 102 chr4 106999768 107000101 -77288561 + AluSx SINE Alu 1 299 -13 1113 238 57 50 chr4 107000101 107000311 -77288351 + L1ME1 LINE L1 5898 6114 -52 1837 158 4 0 chr4 107000537 107000816 -77287846 + AluSx SINE Alu 3 282 -30 275 151 0 19 chr4 107000907 107000960 -77287702 - L1PA16 LINE L1 -9 6157 6106 229 121 0 0 chr4 107000954 107000987 -77287675 + L1PA16 LINE L1 6061 6093 -73 * 22 70 0 0 chr4 107000991 107001034 -77287628 + AT_rich Low_complexity Low_complexity 1 43 0 1962 134 21 3 chr4 107001403 107001687 -77286975 - AluJb SINE Alu -23 289 1 758 123 0 0 chr4 107002273 107002387 -77286275 + AluSq/x SINE Alu 1 114 -199 2312 95 20 0 chr4 107002706 107003012 -77285650 + AluSx SINE Alu 1 312 0 645 288 50 14 chr4 107003167 107003386 -77285276 - MIR SINE MIR -16 246 20 2123 133 10 10 chr4 107003934 107004243 -77284419 - AluSx SINE Alu -3 309 1 489 258 27 48 chr4 107004783 107004969 -77283693 - LTR41 LTR ERVL -590 183 2 208 250 29 29 chr4 107005154 107005222 -77283440 - L3 LINE CR1 -11 1566 1499 1509 170 96 3 chr4 107005818 107006130 -77282532 - L1MB7 LINE L1 -16 6168 5828 809 194 0 0 chr4 107006131 107006260 -77282402 - AluJ SINE Alu -14 298 170 260 262 0 12 chr4 107006273 107006357 -77282305 + L1P LINE L1 4965 5047 -1099 2294 87 0 3 chr4 107006391 107006689 -77281973 + AluY SINE Alu 1 297 -14 1069 161 20 40 chr4 107006866 107007065 -77281597 - AluJ SINE Alu -117 195 1 1643 158 0 0 chr4 107007067 107007326 -77281336 - L1MB7 LINE L1 -358 5826 5568 2135 99 0 17 chr4 107007359 107007652 -77281010 + AluSc SINE Alu 1 288 -21 2241 88 0 17 chr4 107007654 107007949 -77280713 + AluY SINE Alu 1 290 -21 365 289 67 92 chr4 107008081 107008600 -77280062 + L1MC/D LINE L1 4542 5047 -1099 2411 88 0 0 chr4 107008610 107008916 -77279746 - AluY SINE Alu -5 306 1 26 0 0 0 chr4 107008916 107008942 -77279720 + AT_rich Low_complexity Low_complexity 1 26 0 573 302 90 35 chr4 107009173 107009549 -77279113 + L1MC/D LINE L1 5317 5723 -398 1088 167 0 44 chr4 107009578 107009758 -77278904 + FAM SINE Alu 4 175 0 1416 180 3 64 chr4 107010855 107011039 -77277623 - AluJo SINE Alu -2 310 153 2458 84 0 7 chr4 107011039 107011349 -77277313 - AluSq SINE Alu -5 308 1 1416 180 3 64 chr4 107011349 107011492 -77277170 - AluJo SINE Alu -159 153 3 344 200 50 0 chr4 107011532 107011612 -77277050 - L1PB4 LINE L1 0 6156 6073 2074 121 3 3 chr4 107012688 107012985 -77275677 + AluSx SINE Alu 1 297 -15 1624 193 13 7 chr4 107013383 107013689 -77274973 + AluJb SINE Alu 2 309 -3 1054 152 12 0 chr4 107013973 107014137 -77274525 + AluSg/x SINE Alu 134 299 -11 474 259 192 94 chr4 107014237 107014565 -77274097 - L2 LINE L2 -6 3307 2948 1496 265 279 21 chr4 107014568 107015442 -77273220 - L2 LINE L2 -1864 1450 351 243 246 77 0 chr4 107015446 107015511 -77273151 - L2 LINE L2 -3170 144 75 1864 158 9 25 chr4 107016075 107016392 -77272270 + AluJo SINE Alu 1 312 0 22 35 0 0 chr4 107017307 107017336 -77271326 + AT_rich Low_complexity Low_complexity 1 29 0 393 286 137 95 chr4 107018235 107018571 -77270091 + L2 LINE L2 2914 3263 -9 1664 158 66 4 chr4 107018575 107018848 -77269814 - AluJo SINE Alu -21 291 2 1076 297 52 13 chr4 107018994 107019378 -77269284 + HERVL LTR ERVL 2804 3202 -2452 201 94 0 0 chr4 107019434 107019466 -77269196 + (A)n Simple_repeat Simple_repeat 1 32 0 641 244 60 55 chr4 107019556 107019773 -77268889 + HERVL LTR ERVL 3449 3666 -2098 3102 247 96 23 chr4 107019838 107020619 -77268043 + HERVL LTR ERVL 3783 4648 -1116 2182 136 136 18 chr4 107020619 107021002 -77267660 + MSTA LTR MaLR 1 428 0 3102 247 96 23 chr4 107021002 107021176 -77267486 + HERVL LTR ERVL 4648 4808 -956 879 279 106 39 chr4 107021207 107021594 -77267068 + HERVL LTR ERVL 4895 5307 -457 409 336 81 42 chr4 107021666 107021901 -77266761 + MIR SINE MIR 2 250 -12 278 306 35 0 chr4 107022322 107022407 -77266255 + L2 LINE L2 2924 3011 -261 6248 86 34 23 chr4 107022633 107022768 -77265894 - L1PB2 LINE L1 0 6151 6019 2190 128 3 0 chr4 107022768 107023074 -77265588 - AluSx SINE Alu -5 307 1 6248 86 34 23 chr4 107023074 107023893 -77264769 - L1PB2 LINE L1 -132 6019 5227 211 217 43 0 chr4 107023909 107023955 -77264707 + L2 LINE L2 3188 3235 -37 2123 106 3 17 chr4 107024014 107024334 -77264328 - AluSx SINE Alu 0 312 1 661 162 190 34 chr4 107024382 107024561 -77264101 - L2 LINE L2 -4 3309 3103 1875 80 0 8 chr4 107024601 107024839 -77263823 - AluSq SINE Alu -77 236 1 180 273 0 0 chr4 107025354 107025464 -77263198 + CT-rich Low_complexity Low_complexity 1 110 0 259 259 60 17 chr4 107026297 107026413 -77262249 - L1M4 LINE L1 -3388 2758 2638 906 184 0 0 chr4 107026495 107026647 -77262015 - MER69 DNA AcHobo -818 408 257 864 207 87 0 chr4 107026654 107026862 -77261800 + L1MB8 LINE L1 5953 6178 0 210 71 0 0 chr4 107028255 107028283 -77260379 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 2256 94 0 7 chr4 107028991 107029288 -77259374 - AluSg SINE Alu -15 295 1 1709 218 49 35 chr4 107029325 107029921 -77258741 + pTR5 LTR ERV1 741 1344 -1094 5054 96 22 134 chr4 107029937 107030863 -77257799 + LTR12 LTR ERV1 5 826 0 634 182 26 78 chr4 107031365 107031557 -77257105 + MER53 DNA DNA 8 189 0 2171 99 0 13 chr4 107033837 107034140 -77254522 - AluSg SINE Alu -11 299 1 638 53 0 0 chr4 107035899 107035975 -77252687 - Alu SINE Alu -232 77 2 2184 91 7 29 chr4 107036218 107036527 -77252135 - AluSc SINE Alu -7 302 1 1298 133 4 76 chr4 107037918 107038167 -77250495 - AluJo SINE Alu -3 309 79 1942 123 7 23 chr4 107038642 107038952 -77249710 + AluSx SINE Alu 1 305 -7 207 0 0 0 chr4 107039322 107039345 -77249317 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2504 64 0 0 chr4 107040455 107040750 -77247912 - AluY SINE Alu -16 295 1 2391 85 3 0 chr4 107040902 107041207 -77247455 - AluSx SINE Alu -6 306 1 1150 224 14 9 chr4 107041835 107042058 -77246604 - MER58A DNA MER1_type 0 224 1 2006 131 0 0 chr4 107042708 107043017 -77245645 - AluSx SINE Alu 0 309 1 496 235 185 46 chr4 107043029 107043396 -77245266 - MLT1J1 LTR MaLR -72 439 1 2191 99 0 3 chr4 107044579 107044872 -77243790 + AluY SINE Alu 5 296 -15 799 305 91 64 chr4 107044947 107045272 -77243390 + L3 LINE CR1 860 1210 -367 1872 132 59 3 chr4 107045272 107045559 -77243103 - AluSg SINE Alu -7 303 1 799 305 91 64 chr4 107045559 107045829 -77242833 + L3 LINE CR1 1210 1471 -106 906 238 97 9 chr4 107045835 107046088 -77242574 - LTR41 LTR ERVL -493 280 8 24 0 0 0 chr4 107047205 107047229 -77241433 + AT_rich Low_complexity Low_complexity 1 24 0 331 235 97 87 chr4 107047754 107048032 -77240630 + L1P5 LINE L1 5266 5553 -598 418 232 51 29 chr4 107048037 107048175 -77240487 - LTR33 LTR ERVL 0 521 381 2221 127 0 0 chr4 107048246 107048554 -77240108 - AluSx SINE Alu -2 310 3 220 239 82 112 chr4 107048780 107048914 -77239748 - MIR SINE MIR -21 241 112 2719 29 0 3 chr4 107049003 107049314 -77239348 - AluY SINE Alu -1 310 1 412 230 66 6 chr4 107049789 107049895 -77238767 - MIR SINE MIR -67 141 34 1344 152 14 76 chr4 107049898 107050174 -77238488 - AluJo SINE Alu -17 295 37 2187 66 0 0 chr4 107050660 107050918 -77237744 - AluSc SINE Alu -17 292 35 392 294 57 34 chr4 107050941 107051118 -77237544 + MER91B DNA MER1_type 1 181 -9 7600 47 15 0 chr4 107051294 107052301 -77236361 - L1PA6 LINE L1 -6 6148 5134 7967 25 9 0 chr4 107052302 107053940 -77234722 + L1PA4 LINE L1 4509 6152 -3 35556 89 33 10 chr4 107053978 107058996 -77229666 - L1PA6 LINE L1 -999 5147 11 297 279 47 0 chr4 107061128 107061214 -77227448 + L2 LINE L2 3198 3287 -26 1487 256 124 41 chr4 107061910 107062587 -77226075 - HAL1 LINE L1 -1 2506 1760 2268 106 7 0 chr4 107062587 107062890 -77225772 - AluSx SINE Alu -7 305 1 1487 256 124 41 chr4 107062890 107062963 -77225699 - HAL1 LINE L1 -747 1760 1694 2164 123 0 3 chr4 107063103 107063404 -77225258 - AluSx SINE Alu -12 300 1 268 266 9 26 chr4 107063404 107063517 -77225145 - HAL1 LINE L1 -1365 1142 1032 2395 87 0 10 chr4 107063529 107063827 -77224835 + AluSx SINE Alu 1 295 -17 651 251 65 22 chr4 107063828 107064129 -77224533 - L1MC4a LINE L1 -1218 6590 6344 470 257 79 0 chr4 107064124 107064276 -77224386 - L1ME2 LINE L1 -1 6163 6000 * 1698 71 5 14 chr4 107065860 107066072 -77222590 + AluSg/x SINE Alu 83 292 -20 894 330 113 6 chr4 107066455 107066940 -77221722 - L2 LINE L2 -1979 1335 799 859 175 88 0 chr4 107066950 107067110 -77221552 - MER3 DNA MER1_type -82 127 1 242 305 119 13 chr4 107067114 107067265 -77221397 - L2 LINE L2 -2511 803 637 6712 54 9 61 chr4 107068130 107069136 -77219526 - SVA Other Other 0 1386 433 5921 65 21 53 chr4 107069153 107070047 -77218615 - SVA Other Other -520 866 1 2134 125 7 3 chr4 107071074 107071370 -77217292 - AluSx SINE Alu -11 301 5 220 239 0 0 chr4 107071577 107071623 -77217039 + MIR SINE MIR 34 79 -129 21 0 0 0 chr4 107072184 107072205 -77216457 + AT_rich Low_complexity Low_complexity 1 21 0 2002 158 0 0 chr4 107072205 107072497 -77216165 - AluSc SINE Alu -17 292 1 10548 134 41 14 chr4 107072527 107074487 -77214175 - L1MA2 LINE L1 0 7723 5816 183 42 0 0 chr4 107074487 107074511 -77214151 + (TCTCCC)n Simple_repeat Simple_repeat 2 25 0 9567 73 51 10 chr4 107074515 107075809 -77212853 + SVA Other Other 40 1386 0 10548 134 41 14 chr4 107075809 107076684 -77211978 - L1MA2 LINE L1 -1909 5814 4807 * 16798 127 22 33 chr4 107076674 107077363 -77211299 - L1MA2 LINE L1 -3238 4327 3632 2206 98 0 3 chr4 107077363 107077679 -77210983 - AluY SINE Alu 0 315 1 16798 127 22 33 chr4 107077679 107078151 -77210511 - L1MA2 LINE L1 -3933 3632 3156 2202 130 0 0 chr4 107078151 107078451 -77210211 - AluSq SINE Alu -13 300 1 16798 127 22 33 chr4 107078451 107078613 -77210049 - L1MA2 LINE L1 -4409 3156 2994 2243 117 13 0 chr4 107078613 107078922 -77209740 - AluSq SINE Alu 0 313 1 16798 127 22 33 chr4 107078922 107079890 -77208772 - L1MA2 LINE L1 -4571 2994 2017 1672 163 3 48 chr4 107079890 107080205 -77208457 - AluJb SINE Alu 0 302 1 16798 127 22 33 chr4 107080205 107080526 -77208136 - L1MA2 LINE L1 -5548 2017 1694 4431 88 4 0 chr4 107080526 107081074 -77207588 - MER41A LTR ERV1 0 554 5 16798 127 22 33 chr4 107081074 107081695 -77206967 - L1MA2 LINE L1 -5871 1694 1103 511 158 50 25 chr4 107081689 107081809 -77206853 - L1MA2 LINE L1 -7430 135 13 * 1623 152 42 0 chr4 107082035 107082298 -77206364 - Tigger3(Golem) DNA MER2_type -1 3028 2755 2303 194 86 65 chr4 107082305 107082934 -77205728 + LTR68 LTR ERV1 99 740 0 1366 220 28 72 chr4 107083442 107083663 -77204999 - MLT1A2 LTR MaLR 0 374 176 2088 124 10 13 chr4 107083663 107083970 -77204692 - AluSx SINE Alu -6 306 1 1366 220 28 72 chr4 107083970 107084139 -77204523 - MLT1A2 LTR MaLR -198 176 1 597 226 61 39 chr4 107084152 107084229 -77204433 + HAL1 LINE L1 1 75 -2432 2466 77 0 0 chr4 107084229 107084528 -77204134 + AluY SINE Alu 1 299 -12 597 226 61 39 chr4 107084528 107084631 -77204031 + HAL1 LINE L1 75 185 -2322 1106 248 142 64 chr4 107084638 107085167 -77203495 - MLT1E LTR MaLR -2 591 22 1236 181 47 40 chr4 107085178 107085455 -77203207 - L1MD2 LINE L1 -7 6352 6074 1401 207 37 31 chr4 107085707 107086059 -77202603 + MLT1A1 LTR MaLR 11 364 -1 983 210 23 51 chr4 107086059 107086316 -77202346 + MLT2F LTR ERVL 414 663 0 1056 276 149 13 chr4 107086322 107086771 -77201891 + HAL1 LINE L1 202 711 -1796 2383 63 0 13 chr4 107086810 107087112 -77201550 - AluY SINE Alu -12 299 2 190 283 0 0 chr4 107087506 107087559 -77201103 + L2 LINE L2 3261 3313 0 453 315 85 39 chr4 107088150 107088537 -77200125 - Tigger8 DNA MER2_type -10 656 252 384 257 92 33 chr4 107088659 107088811 -77199851 - MER20B DNA MER1_type -17 202 42 336 252 117 0 chr4 107088850 107088953 -77199709 - Tigger8 DNA MER2_type -548 118 4 526 257 65 14 chr4 107088967 107089181 -77199481 - L1ME4a LINE L1 -215 5906 5682 586 299 54 23 chr4 107089684 107089945 -77198717 + LTR16C LTR ERVL 221 489 -2 315 0 0 0 chr4 107090357 107090392 -77198270 + (TC)n Simple_repeat Simple_repeat 2 36 0 723 44 0 0 chr4 107090392 107090483 -77198179 + (CCTA)n Simple_repeat Simple_repeat 1 91 0 1954 117 3 43 chr4 107090483 107090783 -77197879 - AluSx SINE Alu -24 288 1 2121 119 3 3 chr4 107090830 107091123 -77197539 + AluSg SINE Alu 1 293 -17 502 275 78 26 chr4 107091242 107091435 -77197227 - MIR SINE MIR -53 209 7 329 194 0 16 chr4 107092217 107092279 -77196383 - MIR SINE MIR -113 149 89 2171 120 0 7 chr4 107092295 107092603 -77196059 - AluSg SINE Alu -4 306 1 2373 102 0 0 chr4 107093281 107093584 -77195078 - AluSx SINE Alu -7 305 3 22 56 0 0 chr4 107093744 107093780 -77194882 + AT_rich Low_complexity Low_complexity 1 36 0 20289 34 16 14 chr4 107094128 107095255 -77193407 + Tigger5 DNA MER2_type 1 1124 -1199 1707 209 0 10 chr4 107095255 107095557 -77193105 - AluJo SINE Alu -13 299 1 20289 34 16 14 chr4 107095557 107096263 -77192399 + Tigger5 DNA MER2_type 1124 1843 -480 2236 104 3 25 chr4 107096263 107096581 -77192081 + AluSx SINE Alu 1 311 -1 20289 34 16 14 chr4 107096581 107097062 -77191600 + Tigger5 DNA MER2_type 1843 2321 -2 248 302 58 23 chr4 107097092 107097178 -77191484 + L2 LINE L2 3206 3294 -19 21 0 0 0 chr4 107097905 107097926 -77190736 + AT_rich Low_complexity Low_complexity 1 21 0 2169 114 0 29 chr4 107097935 107098250 -77190412 + AluSx SINE Alu 1 306 -6 1264 282 68 54 chr4 107098928 107099035 -77189627 - L2 LINE L2 0 3313 3209 2314 116 0 0 chr4 107099035 107099336 -77189326 + AluSx SINE Alu 1 301 -11 1264 282 68 54 chr4 107099336 107100141 -77188521 - L2 LINE L2 -104 3209 2364 851 127 0 15 chr4 107100529 107100663 -77187999 - AluSg/x SINE Alu -2 310 179 3268 190 111 54 chr4 107100745 107101535 -77187127 - MER21B LTR ERV1 -20 911 1 1561 178 11 14 chr4 107101587 107101874 -77186788 + AluJo SINE Alu 5 290 -22 2324 102 3 3 chr4 107101972 107102285 -77186377 - AluSp SINE Alu 0 313 1 562 212 20 20 chr4 107102998 107103144 -77185518 + LTR41 LTR ERVL 6 151 -622 567 218 120 0 chr4 107103557 107103699 -77184963 - MER58C DNA MER1_type 0 215 57 696 196 0 28 chr4 107103804 107103947 -77184715 - MLT1F1 LTR MaLR -10 557 419 2282 110 3 0 chr4 107104020 107104319 -77184343 - AluSx SINE Alu -12 300 1 28 22 0 22 chr4 107104653 107104680 -77183982 + AT_rich Low_complexity Low_complexity 1 28 -17 2326 85 0 7 chr4 107104680 107104973 -77183689 - AluY SINE Alu -20 291 1 28 22 0 22 chr4 107104973 107104991 -77183671 + AT_rich Low_complexity Low_complexity 28 45 0 990 209 186 41 chr4 107105483 107105605 -77183057 - L1ME3A LINE L1 -14 6156 6053 2525 65 3 3 chr4 107105605 107105911 -77182751 + AluSp SINE Alu 1 306 -7 990 209 186 41 chr4 107105911 107106133 -77182529 - L1ME3A LINE L1 -117 6053 5762 494 88 100 0 chr4 107106134 107106214 -77182448 + LTR9B LTR ERV1 1 88 -556 4319 43 22 8 chr4 107106214 107106724 -77181938 - L1PA7 LINE L1 0 6154 5638 3256 137 19 6 chr4 107106726 107107239 -77181423 + LTR9B LTR ERV1 125 644 0 750 212 115 0 chr4 107107245 107107462 -77181200 - L1ME3A LINE L1 -404 5758 5517 899 333 117 19 chr4 107107686 107107957 -77180705 - L2 LINE L2 -1028 2286 2043 2280 107 0 0 chr4 107107957 107108257 -77180405 + AluSx SINE Alu 1 300 -12 899 333 117 19 chr4 107108257 107108576 -77180086 - L2 LINE L2 -1271 2043 1638 3624 94 20 8 chr4 107108801 107109302 -77179360 + L1PB1 LINE L1 5642 6148 -3 8627 107 21 50 chr4 107109345 107109482 -77179180 - Tigger1 DNA MER2_type -1 2417 2277 2035 127 0 3 chr4 107109482 107109766 -77178896 + AluJb SINE Alu 5 287 -25 8627 107 21 50 chr4 107109766 107110812 -77177850 - Tigger1 DNA MER2_type -141 2277 1280 2118 122 10 0 chr4 107110812 107111107 -77177555 + AluSq SINE Alu 1 298 -15 8627 107 21 50 chr4 107111107 107111327 -77177335 - Tigger1 DNA MER2_type -1138 1280 1055 1014 178 125 100 chr4 107111338 107111777 -77176885 - LTR7 LTR ERV1 0 450 1 * 6437 135 36 25 chr4 107111777 107112515 -77176147 - Tigger1 DNA MER2_type -1361 1057 302 2002 72 41 44 chr4 107112515 107112808 -77175854 - AluY SINE Alu -19 292 1 6437 135 36 25 chr4 107112808 107113114 -77175548 - Tigger1 DNA MER2_type -2116 302 1 334 285 83 7 chr4 107113469 107113613 -77175049 - MARNA DNA Mariner -142 444 290 423 162 0 0 chr4 107114298 107114366 -77174296 - Alu SINE Alu -10 302 235 1085 76 0 0 chr4 107114366 107114497 -77174165 - AluSg SINE Alu -179 131 1 2121 126 10 0 chr4 107114595 107114889 -77173773 - AluSx SINE Alu -15 297 1 2183 121 3 3 chr4 107114898 107115205 -77173457 - AluSx SINE Alu -2 310 4 399 122 16 8 chr4 107115212 107115285 -77173377 + MLT1C LTR MaLR 320 467 0 274 95 24 0 chr4 107115389 107115431 -77173231 + MER57A LTR ERV1 295 337 -66 249 302 63 16 chr4 107115826 107115952 -77172710 - L1ME LINE L1 -247 5874 5743 380 265 86 0 chr4 107115979 107116141 -77172521 - L1ME4a LINE L1 -2 6119 5944 338 300 81 12 chr4 107116129 107116289 -77172373 - L1ME LINE L1 -382 5739 5569 * 314 352 95 58 chr4 107116417 107117113 -77171549 + L2 LINE L2 2254 2975 -339 549 276 62 62 chr4 107117128 107117562 -77171100 + L2 LINE L2 1437 1870 -1444 1052 308 163 28 chr4 107117565 107118211 -77170451 + L2 LINE L2 2245 2977 -337 252 289 26 0 chr4 107118224 107118300 -77170362 - MIR SINE MIR -48 214 137 3978 150 17 8 chr4 107118419 107119065 -77169597 - L1MC1 LINE L1 0 6333 5682 22 35 0 0 chr4 107119462 107119491 -77169171 + AT_rich Low_complexity Low_complexity 1 29 0 409 288 49 49 chr4 107120555 107120781 -77167881 - L1MDa LINE L1 -3961 2579 2354 304 308 101 0 chr4 107120903 107121101 -77167561 - HAL1 LINE L1 -898 1609 1392 840 160 0 47 chr4 107121128 107121278 -77167384 - AluJb SINE Alu -169 143 1 1898 212 170 9 chr4 107121980 107122550 -77166112 - L1MC4 LINE L1 -141 7901 7240 1871 207 47 91 chr4 107122552 107123190 -77165472 - L1MC4 LINE L1 -957 7085 6476 1543 151 55 58 chr4 107123383 107123695 -77164967 - MLT1B LTR MaLR -79 311 1 1114 191 50 32 chr4 107123821 107124175 -77164487 - MSTD LTR MaLR -5 391 1 295 206 40 13 chr4 107124177 107124254 -77164408 - L1MDa LINE L1 -901 2000 1843 602 168 32 40 chr4 107124255 107124380 -77164282 - L2 LINE L2 -8 3305 3182 830 172 30 41 chr4 107124400 107124499 -77164163 - L1ME LINE L1 -489 5677 5579 2255 101 0 13 chr4 107124499 107124806 -77163856 + AluSg SINE Alu 1 303 -7 830 172 30 41 chr4 107124806 107124875 -77163787 - L1ME LINE L1 -587 5579 5511 2008 138 7 0 chr4 107124990 107125279 -77163383 - AluSq SINE Alu -22 291 1 2271 116 0 0 chr4 107125733 107126035 -77162627 + AluSx SINE Alu 1 302 -10 245 130 0 22 chr4 107126146 107126192 -77162470 - LTR37A LTR ERV1 0 426 382 2280 234 58 64 chr4 107126217 107126994 -77161668 - MER21B LTR ERV1 -52 811 40 567 271 53 12 chr4 107127206 107127376 -77161286 + MER5A DNA MER1_type 7 183 -6 266 236 0 0 chr4 107127648 107127703 -77160959 + L1ME4a LINE L1 5963 6017 -104 1961 137 23 7 chr4 107127768 107128075 -77160587 - AluJb SINE Alu 0 312 1 2223 123 0 3 chr4 107128342 107128650 -77160012 + AluSg SINE Alu 1 307 -3 608 201 0 43 chr4 107129242 107129381 -77159281 + MER3 DNA MER1_type 1 133 -76 841 142 0 37 chr4 107129394 107129528 -77159134 - FLAM_C SINE Alu -10 133 5 231 209 0 0 chr4 107129555 107129598 -77159064 - Charlie5 DNA MER1_type -2569 43 1 434 274 152 18 chr4 107129606 107129706 -77158956 - MER5A DNA MER1_type 0 189 104 2255 105 3 0 chr4 107129706 107130001 -77158661 - AluSp SINE Alu -17 296 1 434 274 152 18 chr4 107130001 107130064 -77158598 - MER5A DNA MER1_type -85 104 4 1871 152 38 0 chr4 107130722 107131012 -77157650 + AluJb SINE Alu 5 305 -7 1606 194 3 3 chr4 107131062 107131361 -77157301 - AluJb SINE Alu -13 299 1 2313 93 3 10 chr4 107131938 107132249 -77156413 + AluSp SINE Alu 1 309 -4 1046 203 197 3 chr4 107132858 107133153 -77155509 - L2 LINE L2 0 3313 2962 2014 127 0 0 chr4 107133155 107133430 -77155232 + AluSx SINE Alu 1 275 -37 1230 166 5 27 chr4 107135827 107136050 -77152612 - AluJo SINE Alu -14 298 81 1538 162 53 4 chr4 107136353 107136619 -77152043 - L1MC1 LINE L1 -5 6608 6330 1584 111 21 4 chr4 107136621 107136864 -77151798 + MER6 DNA MER2_type 606 852 -13 1118 206 83 18 chr4 107136903 107137180 -77151482 + MER2 DNA MER2_type 51 345 0 356 275 27 20 chr4 107137323 107137472 -77151190 + GA-rich Low_complexity Low_complexity 1 150 0 3345 155 63 7 chr4 107137476 107138150 -77150512 - L1MC1 LINE L1 -440 6173 5468 * 11870 188 59 31 chr4 107138144 107141840 -77146822 - L1MC1 LINE L1 -2140 4286 462 2121 119 3 13 chr4 107141840 107142151 -77146511 + AluSg SINE Alu 1 308 -2 11870 188 59 31 chr4 107142151 107142627 -77146035 - L1MC1 LINE L1 -5964 462 1 3859 181 67 31 chr4 107142679 107143903 -77144759 - L1MCb LINE L1 -4850 1195 173 302 229 118 49 chr4 107143966 107144110 -77144552 + L1MC4 LINE L1 7064 7217 -825 228 216 0 20 chr4 107144154 107144205 -77144457 + L1MC4 LINE L1 6950 6999 -1043 455 246 14 49 chr4 107144206 107144348 -77144314 - L1MC4a LINE L1 -941 6867 6731 27 29 0 0 chr4 107144353 107144387 -77144275 + AT_rich Low_complexity Low_complexity 1 34 0 533 181 0 11 chr4 107146685 107146765 -77141897 + MER67A LTR ERV1 1 79 -464 685 246 19 70 chr4 107146765 107146980 -77141682 + MER67B LTR ERV1 1 204 -457 1893 204 18 30 chr4 107147011 107147412 -77141250 + MSTD LTR MaLR 1 396 0 1294 170 45 4 chr4 107147414 107147661 -77141001 + MSTD-int LTR MaLR 2 258 -1477 945 149 0 0 chr4 107147661 107147795 -77140867 + AluSq/x SINE Alu 1 134 -179 467 200 60 0 chr4 107147801 107147901 -77140761 + MSTD-int LTR MaLR 253 358 -1377 * 1045 171 0 0 chr4 107147894 107148064 -77140598 - MSTD-int LTR MaLR -1564 171 2 331 148 16 16 chr4 107148066 107148127 -77140535 - MSTD LTR MaLR 0 396 336 840 251 24 5 chr4 107148127 107148334 -77140328 + MSTD-int LTR MaLR 360 570 -1165 2593 208 79 22 chr4 107148337 107148881 -77139781 + MSTD-int LTR MaLR 1161 1735 0 1599 179 47 86 chr4 107148881 107149219 -77139443 + MSTD LTR MaLR 1 322 -74 6697 65 18 272 chr4 107149219 107151052 -77137610 - SVA Other Other 0 1386 20 1599 179 47 86 chr4 107151052 107151120 -77137542 + MSTD LTR MaLR 322 391 -5 1083 194 80 33 chr4 107151133 107151192 -77137470 + MER67A LTR ERV1 92 147 -396 2134 114 0 0 chr4 107151192 107151506 -77137156 - AluSx SINE Alu 0 314 1 1083 194 80 33 chr4 107151506 107151920 -77136742 + MER67A LTR ERV1 147 538 -5 2608 172 53 20 chr4 107152435 107152843 -77135819 - MER34B LTR ERV1 0 565 147 6020 56 53 17 chr4 107152843 107153596 -77135066 - LTR17 LTR ERV1 0 780 1 2608 172 53 20 chr4 107153596 107153725 -77134937 - MER34B LTR ERV1 -418 147 24 701 274 110 17 chr4 107154179 107154416 -77134246 - MIR SINE MIR 0 262 4 304 250 125 4 chr4 107155117 107155252 -77133410 - L1ME LINE L1 -407 5755 5593 2482 70 0 0 chr4 107155465 107155765 -77132897 - AluY SINE Alu -10 301 2 278 341 35 0 chr4 107157184 107157269 -77131393 - MIR SINE MIR -162 100 13 1986 142 10 3 chr4 107157555 107157843 -77130819 - AluSq SINE Alu -23 290 1 1570 183 7 11 chr4 107158021 107158294 -77130368 + AluJo SINE Alu 24 295 -17 1498 184 0 15 chr4 107158504 107158771 -77129891 + AluSx SINE Alu 28 290 -22 283 95 0 0 chr4 107159367 107159409 -77129253 - FRAM/FAM SINE Alu -85 81 40 21 71 0 0 chr4 107160168 107160210 -77128452 + AT_rich Low_complexity Low_complexity 1 42 0 2268 87 7 17 chr4 107160386 107160685 -77127977 - AluSp SINE Alu -17 296 1 2189 104 14 0 chr4 107161311 107161600 -77127062 + AluSx SINE Alu 5 297 -15 1641 159 54 7 chr4 107161665 107161941 -77126721 + AluJo SINE Alu 8 296 -16 2245 152 35 3 chr4 107163052 107163428 -77125234 + MLT1B LTR MaLR 3 390 0 529 224 93 56 chr4 107163691 107163852 -77124810 - MIR SINE MIR 0 262 96 2606 169 36 5 chr4 107164308 107164721 -77123941 + MSTB LTR MaLR 1 426 0 2172 102 10 0 chr4 107164810 107165105 -77123557 + AluSx SINE Alu 1 298 -14 2156 108 17 0 chr4 107165147 107165435 -77123227 - AluSx SINE Alu -16 296 4 2270 92 10 7 chr4 107166232 107166535 -77122127 - AluSq SINE Alu -9 304 1 1962 99 60 3 chr4 107166879 107167161 -77121501 + AluSx SINE Alu 1 298 -14 247 246 0 0 chr4 107167376 107167437 -77121225 + MIR SINE MIR 146 206 -56 2446 76 0 3 chr4 107168186 107168490 -77120172 - AluY SINE Alu -8 303 1 28 0 0 0 chr4 107168619 107168647 -77120015 + AT_rich Low_complexity Low_complexity 1 28 0 1835 146 24 7 chr4 107168677 107168971 -77119691 - AluJo SINE Alu -13 299 1 758 210 149 0 chr4 107170366 107170547 -77118115 + MER3 DNA MER1_type 1 208 -1 293 288 150 7 chr4 107170938 107171091 -77117571 + MER5A DNA MER1_type 1 186 -3 923 214 13 0 chr4 107171782 107171941 -77116721 + FAM SINE Alu 1 161 -14 2032 129 3 16 chr4 107172357 107172667 -77115995 - AluSx SINE Alu -6 306 1 1033 128 6 0 chr4 107172840 107172996 -77115666 - AluY SINE Alu -19 292 136 1938 102 51 10 chr4 107173728 107174022 -77114640 - AluSx SINE Alu -6 306 1 209 172 0 52 chr4 107174852 107174910 -77113752 + C-rich Low_complexity Low_complexity 1 55 0 9108 112 46 29 chr4 107175283 107176125 -77112537 + Tigger1 DNA MER2_type 121 1002 -1416 1933 120 35 7 chr4 107176125 107176409 -77112253 - AluSx SINE Alu -20 292 1 9108 112 46 29 chr4 107176409 107177037 -77111625 + Tigger1 DNA MER2_type 1002 1617 -801 1488 154 60 53 chr4 107177107 107177406 -77111256 + AluJo SINE Alu 8 308 -4 369 80 40 0 chr4 107177406 107177481 -77111181 + (TA)n Simple_repeat Simple_repeat 2 79 0 229 65 0 0 chr4 107177537 107177583 -77111079 - LTR66 LTR ERVL -171 439 394 224 163 0 23 chr4 107177583 107177626 -77111036 + (CATATA)n Simple_repeat Simple_repeat 6 47 0 4501 137 77 4 chr4 107177626 107178053 -77110609 + Tigger1 DNA MER2_type 1610 2004 -414 1843 109 84 4 chr4 107178053 107178327 -77110335 + AluSg SINE Alu 1 296 -14 4501 137 77 4 chr4 107178327 107178651 -77110011 + Tigger1 DNA MER2_type 2004 2416 -2 2137 105 20 0 chr4 107178792 107179087 -77109575 - AluSp SINE Alu -12 301 1 324 250 60 10 chr4 107179700 107179800 -77108862 + MIR SINE MIR 156 260 -2 343 306 118 39 chr4 107180310 107180539 -77108123 + MIR SINE MIR 13 259 -3 1046 144 40 0 chr4 107180566 107180740 -77107922 + MER5A DNA MER1_type 7 187 -2 28 0 0 0 chr4 107181037 107181065 -77107597 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 107181404 107181427 -77107235 + AT_rich Low_complexity Low_complexity 1 23 0 1932 177 0 0 chr4 107181871 107182170 -77106492 - AluSx SINE Alu -13 299 1 207 0 0 0 chr4 107182458 107182481 -77106181 + (T)n Simple_repeat Simple_repeat 1 23 0 4713 197 87 22 chr4 107182564 107183721 -77104941 + L1MC3 LINE L1 6531 7762 -23 2095 115 21 0 chr4 107183914 107184200 -77104462 - AluSx SINE Alu -20 292 1 1025 210 29 144 chr4 107186137 107186362 -77102300 - AluYb8 SINE Alu 0 308 135 279 0 0 0 chr4 107186362 107186393 -77102269 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1025 210 29 144 chr4 107186393 107186515 -77102147 - AluYb8 SINE Alu -173 135 1 314 23 0 23 chr4 107186859 107186903 -77101759 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1808 119 46 4 chr4 107186918 107187179 -77101483 - AluSx SINE Alu -40 272 1 412 253 110 13 chr4 107187729 107187883 -77100779 + MIR SINE MIR 88 256 -6 794 167 7 14 chr4 107188068 107188206 -77100456 + MER68 LTR ERV1 424 560 -2 1973 182 64 9 chr4 107188277 107188623 -77100039 + MLT1A1 LTR MaLR 1 365 0 216 219 0 0 chr4 107190358 107190399 -77098263 + (TA)n Simple_repeat Simple_repeat 2 42 0 1410 124 9 14 chr4 107190995 107191213 -77097449 - Tigger1 DNA MER2_type 0 2418 2202 768 134 11 134 chr4 107191202 107191381 -77097281 - Tigger1 DNA MER2_type -2261 157 1 * 265 324 170 40 chr4 107191381 107191628 -77097034 - L3 LINE CR1 -67 1510 1232 830 126 71 24 chr4 107191867 107192009 -77096653 + FLAM_C SINE Alu 1 191 -37 360 0 0 0 chr4 107192009 107192049 -77096613 + (TA)n Simple_repeat Simple_repeat 2 41 0 830 126 71 24 chr4 107192049 107192089 -77096573 + FLAM_C SINE Alu 191 228 0 2320 93 3 10 chr4 107192191 107192502 -77096160 + AluSp SINE Alu 1 309 -4 2262 99 0 10 chr4 107192721 107193024 -77095638 - AluSg SINE Alu -10 300 1 2231 243 125 29 chr4 107193087 107193746 -77094916 + L2 LINE L2 2314 3113 -200 2398 141 17 8 chr4 107193746 107194108 -77094554 + MLT1A1 LTR MaLR 1 365 0 2231 243 125 29 chr4 107194108 107194330 -77094332 + L2 LINE L2 3113 3312 -1 409 325 144 39 chr4 107194483 107194843 -77093819 - L3 LINE CR1 -498 1079 682 2296 96 13 0 chr4 107195525 107195826 -77092836 - AluSp SINE Alu -8 305 1 369 330 0 0 chr4 107196352 107196455 -77092207 + L2 LINE L2 2985 3087 -226 181 268 24 0 chr4 107196522 107196563 -77092099 + L2 LINE L2 3253 3294 -19 22 56 0 0 chr4 107196788 107196824 -77091838 + AT_rich Low_complexity Low_complexity 1 36 0 1098 231 218 18 chr4 107197294 107197693 -77090969 + L2 LINE L2 1214 1692 -1622 1340 211 72 36 chr4 107197696 107198027 -77090635 + L2 LINE L2 2372 2714 -600 2157 93 25 0 chr4 107198511 107198815 -77089847 - AluSx SINE Alu 0 311 1 974 135 11 43 chr4 107199048 107199233 -77089429 + FRAM SINE Alu 1 171 -5 435 168 11 21 chr4 107199336 107199431 -77089231 + L2 LINE L2 2383 2476 -838 934 278 92 14 chr4 107199431 107199791 -77088871 + L2 LINE L2 2926 3313 0 221 153 0 17 chr4 107201509 107201568 -77087094 + (CGGGG)n Simple_repeat Simple_repeat 1 58 0 319 314 29 36 chr4 107201668 107201805 -77086857 - MER5B DNA MER1_type -39 139 4 1938 104 45 17 chr4 107202475 107202763 -77085899 + AluSx SINE Alu 1 296 -16 256 32 0 0 chr4 107202902 107202933 -77085729 - MIR SINE MIR -14 248 218 269 271 108 47 chr4 107202983 107203112 -77085550 - MER91A DNA MER1_type -27 169 33 180 283 83 0 chr4 107203154 107203214 -77085448 - MIR SINE MIR -99 163 99 23 0 0 0 chr4 107203260 107203283 -77085379 + AT_rich Low_complexity Low_complexity 1 23 0 228 284 45 45 chr4 107203313 107203401 -77085261 + MIR3 SINE MIR 88 175 -33 192 262 78 19 chr4 107203514 107203617 -77085045 + L2 LINE L2 2125 2233 -1081 809 188 18 77 chr4 107203898 107203980 -77084682 - MER45A DNA AcHobo -1406 175 107 2501 70 0 0 chr4 107203980 107204280 -77084382 + AluY SINE Alu 1 300 -11 809 188 18 77 chr4 107204280 107204367 -77084295 - MER45A DNA AcHobo -1474 107 16 2098 101 24 3 chr4 107204388 107204676 -77083986 - AluSx SINE Alu -18 294 1 937 308 50 3 chr4 107204885 107205207 -77083455 - L2 LINE L2 -653 2661 2325 2296 96 13 0 chr4 107405672 107405973 -76882689 - AluSp SINE Alu -8 305 1 369 330 0 0 chr4 107406499 107406602 -76882060 + L2 LINE L2 2985 3087 -226 181 268 24 0 chr4 107406669 107406710 -76881952 + L2 LINE L2 3253 3294 -19 22 56 0 0 chr4 107406935 107406971 -76881691 + AT_rich Low_complexity Low_complexity 1 36 0 1098 231 218 18 chr4 107407441 107407840 -76880822 + L2 LINE L2 1214 1692 -1622 1340 211 72 36 chr4 107407843 107408174 -76880488 + L2 LINE L2 2372 2714 -600 2157 93 25 0 chr4 107408658 107408962 -76879700 - AluSx SINE Alu 0 311 1 974 135 11 43 chr4 107409195 107409380 -76879282 + FRAM SINE Alu 1 171 -5 435 168 11 21 chr4 107409483 107409578 -76879084 + L2 LINE L2 2383 2476 -838 934 278 92 14 chr4 107409578 107409938 -76878724 + L2 LINE L2 2926 3313 0 214 158 0 0 chr4 107411656 107411694 -76876968 + (CGGGG)n Simple_repeat Simple_repeat 1 38 0 18540 87 25 7 chr4 107411830 107414363 -76874299 - L1P LINE L1 -3568 2578 2 1088 235 0 0 chr4 107414361 107414616 -76874046 + L1 LINE L1 2906 3160 -2986 * 346 291 0 0 chr4 107414651 107414737 -76873925 + L2 LINE L2 2039 2124 -1190 1206 261 89 34 chr4 107414744 107415282 -76873380 + L2 LINE L2 2739 3305 -8 419 238 62 31 chr4 107415285 107415445 -76873217 - Charlie7 DNA MER1_type -2447 165 1 421 314 23 34 chr4 107415454 107415629 -76873033 - MER5A DNA MER1_type -1 188 16 832 243 67 93 chr4 107415795 107415875 -76872787 - MLT1I LTR MaLR 0 409 328 2194 85 36 0 chr4 107415875 107416156 -76872506 - AluSc SINE Alu -17 292 2 832 243 67 93 chr4 107416156 107416495 -76872167 - MLT1I LTR MaLR -81 328 1 1722 185 10 26 chr4 107416519 107416821 -76871841 + AluJo SINE Alu 1 297 -15 386 277 48 56 chr4 107417403 107417634 -76871028 + L2 LINE L2 1533 1761 -1553 1985 143 0 34 chr4 107417658 107417980 -76870682 - AluSx SINE Alu -1 311 1 1205 149 106 116 chr4 107417991 107418293 -76870369 - AluSg SINE Alu -1 299 1 457 226 44 7 chr4 107418339 107418476 -76870186 - HAL1 LINE L1 -60 2447 2306 * 770 214 184 33 chr4 107418473 107418744 -76869918 - HAL1 LINE L1 -2153 354 43 2205 121 13 0 chr4 107418819 107419124 -76869538 - AluSx SINE Alu -3 309 1 688 126 76 8 chr4 107419203 107419322 -76869340 - LTR54B LTR ERV1 -371 127 1 2315 244 143 15 chr4 107421094 107422017 -76866645 - L1MEc LINE L1 -4603 1793 753 355 231 113 41 chr4 107422025 107422220 -76866442 + MER97c DNA MER1_type? 881 1089 -1 792 280 155 41 chr4 107422256 107422695 -76865967 + L1MC/D LINE L1 5260 5748 -2060 22 35 0 0 chr4 107422933 107422962 -76865700 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr4 107423194 107423223 -76865439 + AT_rich Low_complexity Low_complexity 1 29 0 462 257 29 42 chr4 107424018 107424184 -76864478 - MIR SINE MIR -52 210 49 1734 145 8 0 chr4 107424489 107424738 -76863924 + AluSq SINE Alu 1 251 -62 21 57 0 0 chr4 107424759 107424794 -76863868 + AT_rich Low_complexity Low_complexity 1 35 0 2405 126 24 39 chr4 107424800 107425181 -76863481 - THE1C LTR MaLR 0 375 1 1329 185 98 96 chr4 107425557 107426006 -76862656 - LTR7 LTR ERV1 0 450 1 1188 199 60 55 chr4 107426031 107426378 -76862284 - Charlie7 DNA MER1_type -1948 664 316 567 226 121 25 chr4 107426383 107426582 -76862080 + L2 LINE L2 1685 1902 -1412 10258 177 12 10 chr4 107426624 107426985 -76861677 - L1PB1 LINE L1 0 6151 5792 198 0 0 0 chr4 107426985 107427007 -76861655 + (TA)n Simple_repeat Simple_repeat 2 23 0 10258 177 12 10 chr4 107427007 107429644 -76859018 - L1PB1 LINE L1 -359 5792 3151 22476 53 2 6 chr4 107429671 107433162 -76855500 - L1PA5 LINE L1 -7 6147 2668 444 255 42 69 chr4 107433384 107433600 -76855062 + L2 LINE L2 2127 2336 -978 1119 163 0 15 chr4 107434082 107434278 -76854384 - L1MB3 LINE L1 0 6183 5991 506 228 122 46 chr4 107434383 107434716 -76853946 - MLT1G LTR MaLR -196 394 4 1785 181 10 0 chr4 107434796 107435094 -76853568 + AluJo SINE Alu 5 305 -7 681 303 28 40 chr4 107435345 107435596 -76853066 - LTR67 LTR ERVL -8 549 302 190 288 64 56 chr4 107435830 107435955 -76852707 - L2 LINE L2 -340 2973 2848 240 375 108 16 chr4 107436038 107436425 -76852237 - L2 LINE L2 -639 2675 2253 533 243 9 100 chr4 107436830 107437040 -76851622 + LTR4 LTR ERV1 10 200 -396 678 274 63 30 chr4 107437229 107437499 -76851163 + LTR4 LTR ERV1 318 596 0 21 57 0 0 chr4 107437691 107437726 -76850936 + AT_rich Low_complexity Low_complexity 1 35 0 1822 166 17 10 chr4 107437947 107438249 -76850413 + AluJo SINE Alu 1 304 -8 22 56 0 0 chr4 107438321 107438357 -76850305 + AT_rich Low_complexity Low_complexity 1 36 0 2198 109 13 7 chr4 107438376 107438680 -76849982 - AluSg SINE Alu -4 306 1 1578 261 201 24 chr4 107438680 107439009 -76849653 + L2 LINE L2 1794 2064 -1250 1648 177 7 11 chr4 107439009 107439314 -76849348 - AluJo SINE Alu 0 304 1 1578 261 201 24 chr4 107439314 107439721 -76848941 + L2 LINE L2 2064 2661 -653 2098 101 24 3 chr4 107439930 107440218 -76848444 + AluSx SINE Alu 1 294 -18 809 188 18 77 chr4 107440239 107440326 -76848336 + MER45A DNA AcHobo 16 90 -1491 2501 70 0 0 chr4 107440326 107440626 -76848036 - AluY SINE Alu -11 300 1 809 188 18 77 chr4 107440626 107440708 -76847954 + MER45A DNA AcHobo 90 175 -3 192 262 78 19 chr4 107440989 107441092 -76847570 - L2 LINE L2 -1081 2233 2125 228 284 45 45 chr4 107441205 107441293 -76847369 - MIR3 SINE MIR -33 175 88 23 0 0 0 chr4 107441323 107441346 -76847316 + AT_rich Low_complexity Low_complexity 1 23 0 180 283 83 0 chr4 107441392 107441452 -76847210 + MIR SINE MIR 99 163 -99 269 271 108 47 chr4 107441494 107441623 -76847039 + MER91A DNA MER1_type 33 169 -27 256 32 0 0 chr4 107441673 107441704 -76846958 + MIR SINE MIR 218 248 -14 1938 104 45 17 chr4 107441843 107442131 -76846531 - AluSx SINE Alu -16 296 1 319 314 29 36 chr4 107442801 107442938 -76845724 + MER5B DNA MER1_type 4 139 -39 189 264 0 0 chr4 107443044 107443097 -76845565 + C-rich Low_complexity Low_complexity 1 53 0 187 139 0 23 chr4 107443888 107443931 -76844731 + (TTTTC)n Simple_repeat Simple_repeat 1 42 0 2429 87 3 0 chr4 107445864 107446173 -76842489 + AluSp SINE Alu 1 310 -3 225 289 0 0 chr4 107447484 107447536 -76841126 - L2 LINE L2 -19 3294 3243 327 268 162 7 chr4 107449177 107449343 -76839319 + MIR SINE MIR 40 227 -35 260 246 0 0 chr4 107449670 107449739 -76838923 + CT-rich Low_complexity Low_complexity 3 71 0 655 243 50 77 chr4 107449853 107449985 -76838677 + MIR SINE MIR 1 124 -138 2440 64 3 0 chr4 107449985 107450281 -76838381 - L1PA8 LINE L1 0 6172 5876 655 243 50 77 chr4 107450281 107450407 -76838255 + MIR SINE MIR 124 252 -10 202 294 0 0 chr4 107450762 107450830 -76837832 + L2 LINE L2 1728 1795 -1519 895 200 130 0 chr4 107450833 107451018 -76837644 - MER3 DNA MER1_type 0 209 1 796 321 184 31 chr4 107451383 107452387 -76836275 + L2 LINE L2 1820 2977 -337 325 362 16 54 chr4 107452404 107452589 -76836073 + MER5B DNA MER1_type 1 178 0 2093 139 7 0 chr4 107453292 107453601 -76835061 + AluSx SINE Alu 1 311 -1 495 216 0 0 chr4 107453608 107453724 -76834938 + GA-rich Low_complexity Low_complexity 2 117 0 563 256 32 64 chr4 107454343 107454593 -76834069 + MIR SINE MIR 20 261 -1 207 374 8 46 chr4 107454884 107455015 -76833647 + L2 LINE L2 2501 2626 -688 328 264 18 147 chr4 107455259 107455310 -76833352 + MIR3 SINE MIR 14 70 -138 777 170 0 15 chr4 107455310 107455445 -76833217 - FLAM_C SINE Alu 0 133 1 328 264 18 147 chr4 107455445 107455556 -76833106 + MIR3 SINE MIR 70 155 -53 273 327 0 0 chr4 107455849 107455953 -76832709 + (CCG)n Simple_repeat Simple_repeat 2 105 0 2354 86 0 0 chr4 107457486 107457788 -76830874 + AluSx SINE Alu 1 302 -10 2877 193 63 30 chr4 107457868 107458173 -76830489 - Charlie6 DNA MER1_type -885 2615 2321 2531 75 0 0 chr4 107458173 107458480 -76830182 + AluSx SINE Alu 1 307 -5 2877 193 63 30 chr4 107458480 107458875 -76829787 - Charlie6 DNA MER1_type -1179 2321 1892 2421 147 30 0 chr4 107458875 107459277 -76829385 + MSTB LTR MaLR 1 414 -12 548 227 0 0 chr4 107459288 107459398 -76829264 - Charlie6 DNA MER1_type -1608 1892 1783 1410 213 25 0 chr4 107459441 107459727 -76828935 - MLT1F LTR MaLR -56 486 194 3062 204 72 14 chr4 107459727 107460573 -76828089 - Charlie6 DNA MER1_type -1727 1773 879 2087 231 49 61 chr4 107460569 107460784 -76827878 - Charlie6 DNA MER1_type -2762 738 522 * 1116 195 91 46 chr4 107460784 107461215 -76827447 + LTR7 LTR ERV1 1 450 0 2087 231 49 61 chr4 107461215 107461653 -76827009 - Charlie6 DNA MER1_type -2978 522 93 424 248 30 68 chr4 107461736 107461869 -76826793 + L2 LINE L2 3186 3313 0 1263 161 17 30 chr4 107462089 107462463 -76826199 - MER47B DNA MER2_type 0 418 4 2055 108 21 3 chr4 107462551 107462839 -76825823 + AluSx SINE Alu 1 293 -19 2252 121 0 0 chr4 107462839 107463136 -76825526 + AluSc SINE Alu 1 297 -12 740 220 119 78 chr4 107463207 107463788 -76824874 - L1MC5 LINE L1 -44 7917 7313 294 29 0 0 chr4 107463788 107463823 -76824839 + (TTTTC)n Simple_repeat Simple_repeat 4 38 0 338 182 38 114 chr4 107463876 107464008 -76824654 - L1MC5 LINE L1 -561 7400 7279 415 205 94 17 chr4 107464133 107464250 -76824412 - L1MC5 LINE L1 -733 7228 7103 662 219 101 27 chr4 107464284 107464626 -76824036 - L1MC5 LINE L1 -985 6823 6542 450 0 0 0 chr4 107464711 107464761 -76823901 + (TA)n Simple_repeat Simple_repeat 2 51 0 253 207 0 0 chr4 107464823 107464881 -76823781 - L1M4 LINE L1 -2389 3757 3700 186 103 0 0 chr4 107465418 107465447 -76823215 + (TTTTTA)n Simple_repeat Simple_repeat 5 33 0 1482 128 0 0 chr4 107465528 107465746 -76822916 - MSTA LTR MaLR 0 428 211 575 299 91 4 chr4 107465763 107466004 -76822658 + HERV16 LTR ERVL 2569 2830 -2166 1112 336 23 32 chr4 107466210 107466898 -76821764 + HERV16 LTR ERVL 3179 3860 -1904 2440 87 0 0 chr4 107467189 107467500 -76821162 + AluY SINE Alu 1 311 0 1542 342 42 17 chr4 107467636 107468522 -76820140 + HERV16 LTR ERVL 4112 5019 -745 566 186 0 0 chr4 107468641 107468743 -76819919 - AluJb SINE Alu -3 309 208 * 704 140 0 0 chr4 107468739 107468846 -76819816 - AluJo/FLAM SINE Alu -205 107 1 296 356 30 49 chr4 107469197 107469464 -76819198 + LTR16A LTR ERVL 3 264 -186 24 53 0 0 chr4 107470313 107470351 -76818311 + AT_rich Low_complexity Low_complexity 1 38 0 206 239 22 0 chr4 107470527 107470573 -76818089 - L2 LINE L2 -10 3262 3216 259 246 130 55 chr4 107471200 107471530 -76817132 + L1ME4a LINE L1 5697 6053 -68 1124 131 6 6 chr4 107471673 107471841 -76816821 + FRAM SINE Alu 5 172 -4 335 235 81 119 chr4 107472059 107472319 -76816343 + L1M4c LINE L1 2 251 -6291 1457 236 69 91 chr4 107472829 107473631 -76815031 + L1M4c LINE L1 393 1176 -5366 2291 189 42 34 chr4 107473653 107474219 -76814443 - L1MA10 LINE L1 -7 7287 6717 * 4581 207 25 16 chr4 107474215 107475355 -76813307 - L1MA10 LINE L1 -637 6506 5343 1396 232 21 0 chr4 107475355 107475644 -76813018 - AluJo SINE Alu -17 295 1 4581 207 25 16 chr4 107475644 107475758 -76812904 - L1MA10 LINE L1 -1800 5343 5231 2455 234 46 20 chr4 107475753 107476959 -76811703 - L1MA10 LINE L1 -4217 2890 1691 * 671 315 36 7 chr4 107476995 107477274 -76811388 - L1MA10 LINE L1 -5852 1185 899 4342 206 49 39 chr4 107477280 107477367 -76811295 + L1M4c LINE L1 1189 1274 -5370 2144 125 0 3 chr4 107477367 107477655 -76811007 - AluSx SINE Alu -25 287 1 4342 206 49 39 chr4 107477655 107478339 -76810323 + L1M4c LINE L1 1274 1950 -4694 1637 202 10 16 chr4 107478339 107478646 -76810016 + AluJo SINE Alu 1 305 -7 4342 206 49 39 chr4 107478646 107479583 -76809079 + L1M4c LINE L1 1950 2876 -3768 1864 130 84 0 chr4 107479583 107479868 -76808794 - AluSx SINE Alu -3 309 1 4342 206 49 39 chr4 107479868 107480377 -76808285 + L1M4c LINE L1 2876 3378 -3266 5853 90 12 30 chr4 107480377 107481729 -76806933 + L1PA13 LINE L1 4807 6144 -19 4342 206 49 39 chr4 107481729 107482317 -76806345 + L1M4c LINE L1 3378 4116 -2528 6102 30 0 0 chr4 107482476 107483655 -76805007 - L1PA4 LINE L1 -155 6000 4822 2357 97 0 0 chr4 107484471 107484780 -76803882 - AluY SINE Alu -2 309 1 482 316 110 19 chr4 107484998 107485207 -76803455 + MIR SINE MIR 14 241 -21 560 258 129 40 chr4 107485572 107485797 -76802865 + MIR SINE MIR 18 262 0 336 333 24 0 chr4 107486141 107486267 -76802395 + MIR SINE MIR 100 228 -34 309 138 66 53 chr4 107486486 107486638 -76802024 + (TATAG)n Simple_repeat Simple_repeat 2 155 0 353 239 68 61 chr4 107486645 107486908 -76801754 - L1MEd LINE L1 -3185 2944 2680 310 294 47 0 chr4 107486962 107487132 -76801530 - L1MEd LINE L1 -3849 2280 2103 293 267 96 15 chr4 107487756 107487891 -76800771 - L1MEd LINE L1 -5966 153 8 321 336 0 0 chr4 107487961 107488071 -76800591 - L1M4 LINE L1 -3775 2371 2262 2349 108 0 3 chr4 107488407 107488713 -76799949 - AluSx SINE Alu -7 305 1 366 187 121 0 chr4 107488718 107488809 -76799853 - MIR SINE MIR -71 191 90 210 37 0 0 chr4 107490670 107490697 -76797965 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 2076 130 30 0 chr4 107490703 107491004 -76797658 - AluSx SINE Alu -2 310 1 361 309 42 12 chr4 107491148 107491313 -76797349 - L1MC4 LINE L1 -274 7768 7599 24 0 0 0 chr4 107491349 107491373 -76797289 + AT_rich Low_complexity Low_complexity 1 24 0 2087 152 0 0 chr4 107491512 107491815 -76796847 - AluSx SINE Alu -9 303 1 360 228 42 13 chr4 107491949 107492163 -76796499 - L1MC5 LINE L1 -728 7233 6976 350 286 0 19 chr4 107492257 107492362 -76796300 - L2 LINE L2 0 3313 3211 1254 157 9 22 chr4 107492373 107492596 -76796066 + AluY SINE Alu 8 227 -84 223 333 8 24 chr4 107492725 107492848 -76795814 + G-rich Low_complexity Low_complexity 5 125 0 28 0 0 0 chr4 107493112 107493140 -76795522 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 107493225 107493248 -76795414 + AT_rich Low_complexity Low_complexity 1 23 0 393 121 54 13 chr4 107493274 107493517 -76795145 + (TA)n Simple_repeat Simple_repeat 1 253 0 24 32 0 0 chr4 107494019 107494050 -76794612 + AT_rich Low_complexity Low_complexity 1 31 0 212 347 13 13 chr4 107494427 107494502 -76794160 + MIR SINE MIR 37 111 -151 2330 102 3 0 chr4 107494639 107494942 -76793720 + AluSx SINE Alu 1 304 -8 1414 168 5 6 chr4 107495173 107495576 -76793086 - LTR47A LTR ERVL 0 452 1 293 273 11 23 chr4 107495925 107496013 -76792649 + MIR SINE MIR 161 247 -15 2392 84 7 0 chr4 107496085 107496394 -76792268 + AluSq SINE Alu 1 311 -2 858 296 60 47 chr4 107497557 107498118 -76790544 + L2 LINE L2 2745 3309 -4 2043 123 54 42 chr4 107498332 107498665 -76789997 + MER1B DNA MER1_type 1 337 0 1414 158 123 46 chr4 107498924 107499209 -76789453 + AluJo SINE Alu 1 307 -5 361 339 67 24 chr4 107499255 107499420 -76789242 - L2 LINE L2 -2 3270 3099 536 254 127 71 chr4 107499469 107499752 -76788910 - L3 LINE CR1 -12 1565 1267 794 218 11 22 chr4 107500290 107500469 -76788193 + MER45A DNA AcHobo 1 177 -1 1506 182 81 27 chr4 107500915 107501211 -76787451 + AluJb SINE Alu 1 312 0 259 255 21 21 chr4 107501507 107501601 -76787061 - L1MC5 LINE L1 -60 7901 7808 366 226 0 0 chr4 107502037 107502121 -76786541 - L1MC5 LINE L1 -176 7785 7702 527 234 54 61 chr4 107502186 107502386 -76786276 - L1MC5 LINE L1 -367 7594 7395 1718 148 81 0 chr4 107502386 107502657 -76786005 - AluJo SINE Alu -19 293 1 527 234 54 61 chr4 107502657 107502717 -76785945 - L1MC5 LINE L1 -566 7395 7336 239 292 22 45 chr4 107502764 107502853 -76785809 - L2 LINE L2 -9 3263 3177 478 129 0 0 chr4 107503184 107503254 -76785408 + AluS SINE Alu 1 70 -243 474 245 29 10 chr4 107504106 107504208 -76784454 + MIR SINE MIR 2 105 -157 311 355 0 2 chr4 107504226 107504353 -76784309 - MIR SINE MIR -69 139 14 813 267 32 32 chr4 107504737 107504958 -76783704 + MIR SINE MIR 8 228 -34 999 107 23 0 chr4 107605725 107605856 -76682806 - AluSq/x SINE Alu -179 134 1 28 48 0 0 chr4 107605885 107605927 -76682735 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr4 107606256 107606278 -76682384 + AT_rich Low_complexity Low_complexity 1 22 0 3909 86 16 21 chr4 107606668 107607236 -76681426 - L1PA10 LINE L1 -1 6167 5603 1982 102 0 0 chr4 107607467 107607732 -76680930 - AluSx SINE Alu -34 278 14 1803 43 0 5 chr4 107608142 107608352 -76680310 + AluY SINE Alu 82 290 -21 1697 169 44 3 chr4 107609026 107609322 -76679340 - AluJb SINE Alu -4 308 1 302 320 83 19 chr4 107609346 107609502 -76679160 + L2 LINE L2 2808 2973 -299 684 89 0 0 chr4 107609824 107609914 -76678748 - AluS SINE Alu -223 90 1 1216 184 85 4 chr4 107610097 107610368 -76678294 - L1MA7 LINE L1 -312 5979 5687 1444 196 23 11 chr4 107610441 107610706 -76677956 + AluJb SINE Alu 1 268 -44 29 0 0 0 chr4 107610718 107610747 -76677915 + AT_rich Low_complexity Low_complexity 1 29 0 906 222 0 0 chr4 107610803 107610974 -76677688 + AluSc SINE Alu 131 301 -8 195 114 0 0 chr4 107611988 107612023 -76676639 + (A)n Simple_repeat Simple_repeat 1 35 0 308 127 0 0 chr4 107612455 107612510 -76676152 - AluY SINE Alu 0 302 248 1573 38 5 0 chr4 107612610 107612794 -76675868 - AluY SINE Alu -73 238 54 715 206 121 40 chr4 107613191 107613390 -76675272 - MER20 DNA MER1_type 0 219 5 702 283 25 17 chr4 107613403 107613640 -76675022 - L2 LINE L2 -1154 2160 1922 573 261 80 11 chr4 107614191 107614367 -76674295 + MLT1D LTR MaLR 3 190 -315 1610 174 44 12 chr4 107614381 107614721 -76673941 + MLT1D LTR MaLR 135 485 -20 740 200 0 0 chr4 107614862 107614987 -76673675 - FLAM_C SINE Alu -18 125 1 897 213 80 46 chr4 107617719 107618140 -76670522 - MLT1B LTR MaLR -19 371 1 982 197 37 19 chr4 107618245 107618514 -76670148 - MER33 DNA MER1_type -46 278 5 1569 185 12 67 chr4 107619001 107619331 -76669331 + AluJb SINE Alu 1 312 0 924 37 0 0 chr4 107619455 107619562 -76669100 + U6 snRNA snRNA 1 107 0 5533 43 0 1 chr4 107619562 107620233 -76668429 + L1PA5 LINE L1 5478 6147 -7 21 0 0 0 chr4 107620233 107620254 -76668408 + AT_rich Low_complexity Low_complexity 1 21 0 2478 99 0 0 chr4 107624143 107624496 -76664166 - LTR8 LTR ERV1 -106 585 233 1123 182 53 0 chr4 107624550 107624590 -76664072 + AluJb SINE Alu 84 120 -192 2050 55 43 0 chr4 107624590 107624845 -76663817 - AluY SINE Alu -10 301 36 1123 182 53 0 chr4 107624845 107624991 -76663671 + AluJb SINE Alu 120 280 -32 198 0 0 0 chr4 107624997 107625019 -76663643 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 428 267 137 15 chr4 107625527 107625658 -76663004 + MIR SINE MIR 2 148 -114 226 307 30 20 chr4 107625750 107625851 -76662811 - MIR3 SINE MIR -99 109 8 2152 126 3 0 chr4 107627100 107627401 -76661261 + AluSx SINE Alu 1 302 -10 372 309 0 11 chr4 107627922 107628016 -76660646 - MIR3 SINE MIR -1 207 115 806 301 65 0 chr4 107628184 107628430 -76660232 + MIR SINE MIR 1 262 0 1785 185 3 3 chr4 107629342 107629645 -76659017 + AluJb SINE Alu 2 304 -8 4877 109 0 0 chr4 107629788 107630496 -76658166 - L1PA14 LINE L1 0 6161 5454 195 346 19 19 chr4 107630904 107631008 -76657654 + MIR SINE MIR 30 133 -75 301 286 67 8 chr4 107631064 107631183 -76657479 + MIR SINE MIR 55 180 -82 404 202 36 0 chr4 107631226 107631310 -76657352 + L2 LINE L2 3227 3313 0 438 53 0 0 chr4 107631339 107631396 -76657266 + (CA)n Simple_repeat Simple_repeat 1 57 0 200 111 28 0 chr4 107632128 107632164 -76656498 + CT-rich Low_complexity Low_complexity 4 40 0 2061 138 3 13 chr4 107632167 107632472 -76656190 - AluJb SINE Alu -6 306 5 321 89 0 0 chr4 107632573 107632618 -76656044 + MER53 DNA DNA 3 47 -142 21 0 0 0 chr4 107633136 107633157 -76655505 + AT_rich Low_complexity Low_complexity 1 21 0 1508 207 10 24 chr4 107633189 107633479 -76655183 + AluJo SINE Alu 1 286 -26 477 301 28 0 chr4 107633491 107633634 -76655028 + MIR3 SINE MIR 47 193 -15 1641 134 6 110 chr4 107637083 107637419 -76651243 + AluSx SINE Alu 1 301 -11 23 0 0 0 chr4 107637535 107637558 -76651104 + AT_rich Low_complexity Low_complexity 1 23 0 33 0 0 23 chr4 107637573 107637595 -76651067 + AT_rich Low_complexity Low_complexity 1 22 -21 1541 214 7 3 chr4 107637595 107637880 -76650782 - AluJo SINE Alu -26 286 1 33 0 0 23 chr4 107637880 107637901 -76650761 + AT_rich Low_complexity Low_complexity 22 43 0 1544 172 79 7 chr4 107637913 107638192 -76650470 + AluJb SINE Alu 5 303 -9 27 62 0 0 chr4 107639158 107639206 -76649456 + AT_rich Low_complexity Low_complexity 1 48 0 1529 135 0 53 chr4 107639485 107639751 -76648911 - AluJo SINE Alu 0 312 61 949 233 84 103 chr4 107641391 107641867 -76646795 + MLT2E LTR ERVL 154 620 -8 760 291 68 63 chr4 107641878 107642594 -76646068 + L1M4 LINE L1 3545 4256 -1890 2495 55 0 0 chr4 107642594 107642885 -76645777 + AluY SINE Alu 1 291 -20 760 291 68 63 chr4 107642885 107643091 -76645571 + L1M4 LINE L1 4256 4475 -1671 891 133 0 15 chr4 107643091 107643226 -76645436 + FLAM_C SINE Alu 1 133 0 760 291 68 63 chr4 107643226 107643412 -76645250 + L1M4 LINE L1 4475 4659 -1487 237 286 57 46 chr4 107643972 107644147 -76644515 + L1ME3A LINE L1 1293 1469 -4954 588 266 104 62 chr4 107644157 107644209 -76644453 + L1ME3A LINE L1 1661 1709 -5222 2320 89 3 0 chr4 107644209 107644502 -76644160 + AluSg SINE Alu 1 294 -16 588 266 104 62 chr4 107644502 107644607 -76644055 + L1ME3A LINE L1 1709 1808 -5123 694 155 21 84 chr4 107644607 107644749 -76643913 + FLAM_A SINE Alu 1 133 0 588 266 104 62 chr4 107644749 107644988 -76643674 + L1ME3A LINE L1 1808 2023 -4908 741 181 0 0 chr4 107645101 107645284 -76643378 + FLAM_C SINE Alu 1 183 0 351 314 31 18 chr4 107645299 107645522 -76643140 + L1ME3A LINE L1 2321 2546 -4576 559 301 87 11 chr4 107645557 107645684 -76642978 + L1ME3A LINE L1 5491 5607 -1358 2436 86 3 0 chr4 107645684 107645986 -76642676 + AluSc SINE Alu 1 303 -6 559 301 87 11 chr4 107645986 107646648 -76642014 + L1ME3A LINE L1 5607 6342 -623 307 256 50 59 chr4 107646715 107646953 -76641709 + L1ME3A LINE L1 6522 6757 -208 646 203 95 13 chr4 107647030 107647188 -76641474 + FRAM SINE Alu 1 168 -8 427 327 166 33 chr4 107648419 107648872 -76639790 - L3 LINE CR1 -11 1566 1054 492 264 189 0 chr4 107649332 107649491 -76639171 - MER5A DNA MER1_type 0 189 1 339 259 47 12 chr4 107649736 107649821 -76638841 - L3 LINE CR1 -650 927 840 6926 88 20 0 chr4 107649840 107651205 -76637457 - L1PA10 LINE L1 0 6168 4795 21 0 0 0 chr4 107652519 107652540 -76636122 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 107653921 107653949 -76634713 + AT_rich Low_complexity Low_complexity 1 28 0 1912 221 143 16 chr4 107654199 107654828 -76633834 - L1ME2 LINE L1 -47 6117 5409 2084 123 6 25 chr4 107654828 107655146 -76633516 - AluSx SINE Alu 0 312 1 346 246 90 0 chr4 107655221 107655343 -76633319 - MER113 DNA MER1_type? -387 134 2 1323 167 0 9 chr4 107655387 107655608 -76633054 - AluJo SINE Alu -13 299 81 709 260 20 10 chr4 107655827 107656031 -76632631 + MIR SINE MIR 1 206 -56 2965 120 26 2 chr4 107656212 107656630 -76632032 + MSTA LTR MaLR 1 428 0 1323 261 94 59 chr4 107656630 107657159 -76631503 + MLT1K LTR MaLR 41 588 0 216 0 0 0 chr4 107658197 107658221 -76630441 + (TG)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr4 107658292 107658316 -76630346 + AT_rich Low_complexity Low_complexity 1 24 0 543 324 161 17 chr4 107658322 107658732 -76629930 - L2 LINE L2 0 3272 2804 669 172 0 0 chr4 107658841 107658940 -76629722 - FRAM SINE Alu -20 156 58 303 325 98 16 chr4 107659410 107659665 -76628997 - HERV16 LTR ERVL -4720 276 1 749 271 125 14 chr4 107659665 107659979 -76628683 - LTR16A1 LTR ERVL -2 455 93 2380 98 0 9 chr4 107659979 107660294 -76628368 - AluSx SINE Alu 0 312 1 749 271 125 14 chr4 107660294 107660348 -76628314 - LTR16A1 LTR ERVL -364 93 46 613 255 230 0 chr4 107661732 107661928 -76626734 - MIR SINE MIR -5 257 17 26 30 0 0 chr4 107663163 107663196 -76625466 + AT_rich Low_complexity Low_complexity 1 33 0 707 278 15 33 chr4 107663609 107663882 -76624780 + L1MC4 LINE L1 6795 7062 -980 531 255 155 54 chr4 107663926 107664198 -76624464 + L1MC5 LINE L1 6975 7218 -743 1811 168 11 0 chr4 107664198 107664483 -76624179 + AluSx SINE Alu 1 288 -24 531 255 155 54 chr4 107664483 107665169 -76623493 + L1MC5 LINE L1 7218 7886 -75 1804 142 3 68 chr4 107665169 107665494 -76623168 - AluJo SINE Alu -8 304 1 531 255 155 54 chr4 107665494 107665530 -76623132 + L1MC5 LINE L1 7886 7917 -44 2086 124 3 0 chr4 107666151 107666462 -76622200 - AluSx SINE Alu 0 312 1 2011 147 46 35 chr4 107666494 107666862 -76621800 - THE1C LTR MaLR 0 375 4 581 213 43 104 chr4 107667668 107667712 -76620950 - MIR SINE MIR -2 260 215 2142 170 12 82 chr4 107667712 107668136 -76620526 + MSTD LTR MaLR 1 394 -2 581 213 43 104 chr4 107668136 107668203 -76620459 - MIR SINE MIR -47 215 145 2242 95 0 0 chr4 107668203 107668510 -76620152 - AluSq SINE Alu 0 307 1 581 213 43 104 chr4 107668510 107668607 -76620055 - MIR SINE MIR -117 145 63 201 132 0 0 chr4 107668771 107668809 -76619853 + (CA)n Simple_repeat Simple_repeat 2 39 0 305 304 200 0 chr4 107668875 107669000 -76619662 - L2 LINE L2 0 3272 3123 180 0 0 0 chr4 107669981 107670001 -76618661 + (A)n Simple_repeat Simple_repeat 1 20 0 1460 185 122 4 chr4 107670700 107670970 -76617692 + AluJb SINE Alu 1 302 0 261 0 0 0 chr4 107671401 107671430 -76617232 + (A)n Simple_repeat Simple_repeat 1 29 0 2042 106 15 0 chr4 107672386 107672660 -76616002 + AluSg SINE Alu 1 278 -32 21 0 0 0 chr4 107673000 107673021 -76615641 + AT_rich Low_complexity Low_complexity 1 21 0 2467 87 0 0 chr4 107674738 107675048 -76613614 + AluSq SINE Alu 1 310 -3 216 0 0 0 chr4 107675822 107675846 -76612816 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr4 107676641 107676662 -76612000 + AT_rich Low_complexity Low_complexity 1 21 0 548 261 107 33 chr4 107678978 107679193 -76609469 + MIR SINE MIR 22 252 -10 215 309 65 43 chr4 107679231 107679370 -76609292 - MIR3 SINE MIR -24 184 43 1291 169 136 40 chr4 107680080 107680352 -76608310 - AluJo SINE Alu -4 298 1 198 71 0 0 chr4 107680389 107680417 -76608245 + (CAAAA)n Simple_repeat Simple_repeat 4 31 0 2176 95 0 33 chr4 107680653 107680793 -76607869 + AluSx SINE Alu 1 144 -168 2240 94 3 3 chr4 107680793 107681081 -76607581 + AluY SINE Alu 6 293 -18 2176 95 0 33 chr4 107681081 107681246 -76607416 + AluSx SINE Alu 144 296 -16 443 179 37 22 chr4 107683105 107683229 -76605433 + L1MB3 LINE L1 6000 6118 -53 2419 94 0 0 chr4 107684699 107685006 -76603656 + AluSx SINE Alu 1 307 -5 189 0 0 0 chr4 107685326 107685347 -76603315 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 435 101 13 63 chr4 107685803 107685882 -76602780 - MADE1 DNA Mariner 0 80 6 282 167 154 26 chr4 107687456 107687534 -76601128 + L2 LINE L2 3004 3091 -181 219 247 25 86 chr4 107687562 107687643 -76601019 + L2 LINE L2 3195 3270 -2 343 281 108 44 chr4 107688269 107688472 -76600190 + L2 LINE L2 2730 2945 -369 2133 98 0 4 chr4 107688680 107688957 -76599705 - AluSg SINE Alu -5 305 30 242 248 128 67 chr4 107689768 107689917 -76598745 - MER117 DNA MER1_type -7 190 33 194 328 140 65 chr4 107689938 107690124 -76598538 + MIR SINE MIR 49 248 -14 210 118 0 0 chr4 107690881 107690915 -76597747 + (A)n Simple_repeat Simple_repeat 1 34 0 2422 103 0 0 chr4 107690926 107691237 -76597425 + AluSq SINE Alu 1 311 -2 1625 158 3 84 chr4 107691595 107691918 -76596744 - AluJo SINE Alu -15 297 1 1751 185 11 0 chr4 107692475 107692782 -76595880 + AluJb SINE Alu 1 310 0 2434 68 13 10 chr4 107693485 107693794 -76594868 + AluY SINE Alu 1 310 -1 1874 61 4 4 chr4 107693884 107694114 -76594548 - L1PA8 LINE L1 -4 6168 5939 1203 155 5 0 chr4 107694528 107694715 -76593947 - THE1C LTR MaLR 0 375 188 256 268 51 51 chr4 107694746 107694884 -76593778 + L1MC4a LINE L1 5788 5925 -1883 1756 134 48 0 chr4 107695991 107696302 -76592360 + AluSx SINE Alu 1 324 0 469 248 86 0 chr4 107696686 107696803 -76591859 - MIR SINE MIR -73 189 63 258 268 16 89 chr4 107696873 107696996 -76591666 + MER5B DNA MER1_type 2 115 -63 1751 118 152 11 chr4 107697724 107698072 -76590590 + MSTA LTR MaLR 30 426 -2 249 232 101 14 chr4 107698188 107698257 -76590405 + MIR3 SINE MIR 113 187 -21 2208 104 0 0 chr4 107699326 107699613 -76589049 + AluSc SINE Alu 1 287 -22 1177 185 158 3 chr4 107701233 107701530 -76587132 + MER2 DNA MER2_type 2 344 0 233 298 0 0 chr4 107701564 107701621 -76587041 - L2 LINE L2 -2 3311 3255 281 282 57 32 chr4 107701685 107701809 -76586853 - L2 LINE L2 -55 3258 3132 4103 168 52 7 chr4 107702035 107702898 -76585764 + L1MB2 LINE L1 5259 6160 -11 186 258 32 32 chr4 107702926 107702988 -76585674 - L3 LINE CR1 -24 1553 1492 271 312 39 0 chr4 107703479 107703556 -76585106 + Tigger3(Golem) DNA MER2_type 1 80 -2949 41475 47 1 1 chr4 107703731 107709886 -76578776 + L1PA4 LINE L1 2 6153 -2 435 303 125 51 chr4 107710195 107710801 -76577861 - L2 LINE L2 -1 3312 2661 24 53 0 0 chr4 107710811 107710849 -76577813 + AT_rich Low_complexity Low_complexity 1 38 0 213 132 44 22 chr4 107711012 107711103 -76577559 + (TA)n Simple_repeat Simple_repeat 2 94 0 426 115 28 71 chr4 107711197 107711719 -76576943 + (TA)n Simple_repeat Simple_repeat 1 499 0 2362 102 0 0 chr4 107711719 107712022 -76576640 - AluSg SINE Alu -6 304 2 191 296 84 14 chr4 107712789 107712860 -76575802 - MER5A DNA MER1_type -11 178 103 1172 134 158 61 chr4 107712862 107713108 -76575554 - AluJb SINE Alu -22 290 21 273 365 10 10 chr4 107713108 107713212 -76575450 - MER5A DNA MER1_type -84 105 2 180 341 106 32 chr4 107713336 107713459 -76575203 + MIR3 SINE MIR 25 156 -52 21 36 0 0 chr4 107714921 107714949 -76573713 + AT_rich Low_complexity Low_complexity 1 28 0 3201 175 128 1 chr4 107715462 107716113 -76572549 - MER44D DNA MER2_type 0 605 1 1114 227 62 0 chr4 107716405 107716630 -76572032 - MER8 DNA MER2_type 0 239 1 213 271 0 0 chr4 107716975 107717023 -76571639 + GA-rich Low_complexity Low_complexity 1 48 0 496 231 136 7 chr4 107717136 107717283 -76571379 + MIR SINE MIR 97 262 0 2370 101 0 0 chr4 107717727 107718033 -76570629 - AluSc SINE Alu -3 306 1 180 111 0 0 chr4 107719933 107719960 -76568702 + (CA)n Simple_repeat Simple_repeat 2 28 0 596 302 47 22 chr4 107720819 107721097 -76567565 - L2 LINE L2 -55 3258 2974 2074 134 7 0 chr4 107721104 107721394 -76567268 + AluSx SINE Alu 6 297 -15 803 145 8 0 chr4 107721402 107721519 -76567143 + FLAM_C SINE Alu 1 118 -15 528 80 53 0 chr4 107721535 107721648 -76567014 + (TA)n Simple_repeat Simple_repeat 2 120 0 546 189 166 18 chr4 107721665 107721834 -76566828 - L2 LINE L2 -337 2977 2784 2219 110 7 3 chr4 107722329 107722629 -76566033 + AluSx SINE Alu 1 301 -11 524 244 23 15 chr4 107723286 107723417 -76565245 + MER94 DNA DNA 1 132 -2 2348 94 0 0 chr4 107724156 107724453 -76564209 + AluSg1 SINE Alu 1 297 -12 27 29 0 0 chr4 107724818 107724852 -76563810 + AT_rich Low_complexity Low_complexity 1 34 0 2309 105 7 0 chr4 107728166 107728470 -76560192 - AluSx SINE Alu -6 306 1 1355 156 0 5 chr4 107728812 107729024 -76559638 - AluJb SINE Alu -20 292 82 22 0 0 0 chr4 107729123 107729145 -76559517 + AT_rich Low_complexity Low_complexity 1 22 0 1287 184 0 18 chr4 107729580 107729803 -76558859 + AluJb SINE Alu 77 295 -17 702 240 113 65 chr4 107729853 107729972 -76558690 + L1MC5 LINE L1 6623 6735 -1226 2559 66 3 71 chr4 107729972 107730353 -76558309 + THE1A LTR MaLR 1 355 0 702 240 113 65 chr4 107730353 107730712 -76557950 + L1MC5 LINE L1 6735 7124 -837 480 273 163 27 chr4 107730721 107731238 -76557424 + L1MC5 LINE L1 7303 7889 -72 22 80 0 0 chr4 107731702 107731752 -76556910 + AT_rich Low_complexity Low_complexity 1 50 0 1596 140 13 0 chr4 107733209 107733438 -76555224 + AluSq SINE Alu 5 236 -77 3035 121 43 16 chr4 107733455 107733968 -76554694 - MER41B LTR ERV1 -108 527 1 299 180 0 0 chr4 107734436 107734486 -76554176 + L2 LINE L2 3261 3310 -3 221 236 284 8 chr4 107734953 107735080 -76553582 - MIR SINE MIR -13 249 88 240 294 76 42 chr4 107735678 107735797 -76552865 - MIR3 SINE MIR -5 203 81 1738 170 48 7 chr4 107737532 107737826 -76550836 - AluJo SINE Alu -6 306 1 982 197 37 19 chr4 107739280 107739549 -76549113 + MER33 DNA MER1_type 5 278 -46 888 202 112 59 chr4 107739654 107740075 -76548587 + MLT1B LTR MaLR 1 371 -19 1434 140 163 0 chr4 107743100 107743357 -76545305 + AluJb SINE Alu 1 299 -13 186 333 0 88 chr4 107745128 107745275 -76543387 - L2 LINE L2 -417 2897 2764 337 269 86 0 chr4 107745688 107745781 -76542881 + L2 LINE L2 3136 3236 -36 1220 204 26 0 chr4 107745967 107746198 -76542464 - MER8 DNA MER2_type -2 237 1 800 244 59 8 chr4 107747772 107748010 -76540652 + Charlie1a DNA MER1_type 1 250 -1205 216 0 0 0 chr4 107748010 107748034 -76540628 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 2426 96 0 6 chr4 107748036 107748350 -76540312 + AluSx SINE Alu 1 312 0 906 153 0 0 chr4 107748355 107748486 -76540176 + AluJ SINE Alu 1 131 -181 201 82 98 33 chr4 107748486 107748547 -76540115 + (TTAAA)n Simple_repeat Simple_repeat 2 66 0 958 141 22 54 chr4 107748547 107748732 -76539930 + AluJ SINE Alu 121 299 -13 689 213 43 19 chr4 107748733 107748940 -76539722 + Charlie1a DNA MER1_type 259 470 -985 35 24 0 0 chr4 107749009 107749051 -76539611 + AT_rich Low_complexity Low_complexity 1 42 0 1805 147 39 9 chr4 107751912 107752246 -76536416 - L1MB2 LINE L1 -2 6169 5826 652 178 46 0 chr4 107752365 107752517 -76536145 - L1MA8 LINE L1 -5 6286 6128 22 0 0 0 chr4 107752600 107752622 -76536040 + AT_rich Low_complexity Low_complexity 1 22 0 1929 148 10 7 chr4 107752804 107753107 -76535555 - AluJb SINE Alu -8 304 1 21 36 0 0 chr4 107753313 107753341 -76535321 + AT_rich Low_complexity Low_complexity 1 28 0 263 387 17 38 chr4 107753467 107753705 -76534957 + L2 LINE L2 2459 2691 -623 219 234 0 0 chr4 107756071 107756118 -76532544 + CT-rich Low_complexity Low_complexity 1 47 0 1047 171 165 65 chr4 107756437 107756746 -76531916 + MER2 DNA MER2_type 2 341 -3 506 279 31 8 chr4 107756834 107756963 -76531699 - L2 LINE L2 0 3313 3182 366 248 23 23 chr4 107756963 107757092 -76531570 + G-rich Low_complexity Low_complexity 4 132 0 480 269 125 51 chr4 107759460 107759676 -76528986 + MIR SINE MIR 18 249 -13 237 220 0 0 chr4 107759688 107759738 -76528924 + (TGAA)n Simple_repeat Simple_repeat 3 52 0 2268 49 4 0 chr4 107759817 107760083 -76528579 - AluY SINE Alu -8 303 37 2140 56 0 0 chr4 107761048 107761315 -76527347 - L1PA7 LINE L1 0 6154 5888 548 269 99 25 chr4 107761783 107761933 -76526729 + MIR SINE MIR 17 187 -75 408 88 0 0 chr4 107761933 107761990 -76526672 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 548 269 99 25 chr4 107761990 107762040 -76526622 + MIR SINE MIR 187 232 -30 237 33 0 0 chr4 107762063 107762093 -76526569 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 386 307 79 8 chr4 107762311 107762438 -76526224 + MIR3 SINE MIR 60 195 -13 2557 140 44 13 chr4 107762439 107762895 -76525767 + MER7C DNA MER2_type 1 470 -132 5170 158 15 2 chr4 107763036 107764602 -76524060 + L1PB4 LINE L1 4563 6149 -7 25 31 0 0 chr4 107764602 107764634 -76524028 + AT_rich Low_complexity Low_complexity 1 32 0 588 227 169 7 chr4 107764835 107764989 -76523673 - MER5A DNA MER1_type -2 187 9 2274 108 10 0 chr4 107767582 107767879 -76520783 - AluSq SINE Alu -13 300 1 405 288 151 19 chr4 107768273 107768485 -76520177 - MIR SINE MIR -22 240 1 467 149 0 0 chr4 107768880 107768947 -76519715 - AluJ/FLAM SINE Alu -245 67 1 291 214 34 34 chr4 107768987 107769104 -76519558 + L1MC5 LINE L1 7616 7732 -229 34 0 0 0 chr4 107769118 107769152 -76519510 + AT_rich Low_complexity Low_complexity 1 34 0 259 250 0 0 chr4 107769233 107769285 -76519377 - MER5B DNA MER1_type -68 110 59 1188 150 18 44 chr4 107769290 107769516 -76519146 - AluJb SINE Alu -8 304 85 1832 190 0 0 chr4 107770006 107770301 -76518361 - AluJb SINE Alu -17 295 1 2179 106 38 0 chr4 107771725 107772017 -76516645 - AluSx SINE Alu -9 303 1 292 204 0 0 chr4 107772332 107772386 -76516276 - MER2 DNA MER2_type -25 320 267 925 130 68 0 chr4 107772473 107772635 -76516027 - MER2 DNA MER2_type -172 173 1 1357 180 168 14 chr4 107773094 107773522 -76515140 - LTR54B LTR ERV1 -4 494 1 349 248 68 51 chr4 107773619 107773736 -76514926 - MER5A DNA MER1_type -70 119 1 317 333 139 0 chr4 107774368 107774497 -76514165 + MIR3 SINE MIR 30 176 -32 265 346 100 23 chr4 107774774 107774904 -76513758 + L2 LINE L2 3118 3257 -15 354 292 117 29 chr4 107775727 107775898 -76512764 - MIR SINE MIR -62 200 15 2253 95 0 0 chr4 107776312 107776618 -76512044 + AluSx SINE Alu 1 306 0 844 217 30 81 chr4 107776992 107777388 -76511274 + L1MC5 LINE L1 6883 7256 -733 574 226 77 15 chr4 107777521 107777716 -76510946 + L1MC5 LINE L1 7274 7480 -481 500 311 59 11 chr4 107778863 107779066 -76509596 + MIR SINE MIR 2 215 -47 1994 135 11 0 chr4 107779303 107779462 -76509200 - AluSx SINE Alu -27 285 120 495 0 0 0 chr4 107779462 107779517 -76509145 + (TTTTA)n Simple_repeat Simple_repeat 2 56 0 1994 135 11 0 chr4 107779517 107779639 -76509023 - AluSx SINE Alu -192 120 1 2127 109 7 7 chr4 107781297 107781591 -76507071 + AluSx SINE Alu 1 294 -18 27 29 0 0 chr4 107781671 107781705 -76506957 + AT_rich Low_complexity Low_complexity 1 34 0 1924 141 3 30 chr4 107781878 107782177 -76506485 + AluSx SINE Alu 1 291 -21 203 336 55 55 chr4 107782716 107782862 -76505800 + MIR SINE MIR 71 216 -46 478 116 0 0 chr4 107783220 107783289 -76505373 + AluS SINE Alu 231 299 -12 2081 115 0 14 chr4 107783523 107783811 -76504851 - AluSx SINE Alu -12 300 17 24 0 0 0 chr4 107783931 107783955 -76504707 + AT_rich Low_complexity Low_complexity 1 24 0 402 308 188 16 chr4 107783967 107784275 -76504387 - L2 LINE L2 -62 3251 2891 432 363 26 5 chr4 107784421 107784611 -76504051 - L2 LINE L2 -666 2648 2455 2795 121 46 0 chr4 107784611 107785064 -76503598 + MER34B LTR ERV1 1 474 -91 180 0 0 0 chr4 107785064 107785084 -76503578 + (TTTC)n Simple_repeat Simple_repeat 1 20 0 842 169 0 0 chr4 107785085 107785209 -76503453 - FLAM_C SINE Alu -19 124 1 595 120 20 0 chr4 107785209 107785309 -76503353 + MER34B LTR ERV1 464 565 0 687 318 31 50 chr4 107786006 107786217 -76502445 - MIR SINE MIR 0 262 55 2076 29 4 4 chr4 107786217 107786462 -76502200 - AluY SINE Alu -22 289 45 687 318 31 50 chr4 107786462 107786511 -76502151 - MIR SINE MIR -207 55 7 22 35 0 0 chr4 107787460 107787489 -76501173 + AT_rich Low_complexity Low_complexity 1 29 0 417 237 26 0 chr4 107788093 107788207 -76500455 + MER63A DNA MER1_type 52 168 -42 335 113 0 0 chr4 107788259 107788312 -76500350 - MADE1 DNA Mariner -27 53 1 312 171 29 0 chr4 107788565 107788635 -76500027 + MER113 DNA MER1_type? 296 367 -154 1143 154 13 48 chr4 107788971 107789198 -76499464 - MER20 DNA MER1_type 0 219 1 228 130 22 0 chr4 107790281 107790327 -76498335 - MER53 DNA DNA -3 186 140 * 387 163 50 0 chr4 107790323 107790403 -76498259 + MER53 DNA DNA 94 177 -12 * 444 165 47 0 chr4 107790334 107790419 -76498243 - MER53 DNA DNA -94 95 7 23332 103 17 9 chr4 107790991 107796319 -76492343 + L1P LINE L1 11 5370 -776 1055 58 0 0 chr4 107796322 107796459 -76492203 + L1PA6 LINE L1 4192 4328 -1818 6291 56 0 0 chr4 107796459 107797239 -76491423 + L1PA6 LINE L1 5370 6152 -2 36 0 0 39 chr4 107797951 107797982 -76490680 + AT_rich Low_complexity Low_complexity 1 31 -18 2490 56 0 13 chr4 107797982 107798284 -76490378 + AluY SINE Alu 1 298 -13 36 0 0 39 chr4 107798284 107798303 -76490359 + AT_rich Low_complexity Low_complexity 31 49 0 280 261 22 34 chr4 107799076 107799168 -76489494 - MIR SINE MIR -103 105 22 2094 115 46 22 chr4 107800429 107800795 -76487867 - THE1C LTR MaLR 0 375 1 464 327 55 15 chr4 107801271 107801473 -76487189 - MIR SINE MIR -51 211 2 4081 132 34 29 chr4 107801687 107802414 -76486248 + MER4D LTR ERV1 1 731 -172 727 225 6 11 chr4 107802414 107802596 -76486066 - L1M4 LINE L1 -1197 4949 4769 387 0 0 0 chr4 107802814 107802857 -76485805 + (CA)n Simple_repeat Simple_repeat 1 43 0 2436 74 0 0 chr4 107802922 107803221 -76485441 - AluY SINE Alu -12 299 1 1671 242 50 24 chr4 107803354 107803974 -76484688 - Charlie7 DNA MER1_type -343 2269 1634 1446 152 8 53 chr4 107803975 107804007 -76484655 - AluJo SINE Alu -12 300 268 2491 52 0 10 chr4 107804007 107804313 -76484349 + AluY SINE Alu 1 303 -8 1446 152 8 53 chr4 107804313 107804543 -76484119 - AluJo SINE Alu -44 268 50 814 235 104 81 chr4 107804573 107805015 -76483647 - Charlie7 DNA MER1_type -1015 1597 1146 977 259 12 39 chr4 107805025 107805284 -76483378 + MIR SINE MIR 11 262 0 2248 254 53 22 chr4 107805285 107806064 -76482598 - Charlie7 DNA MER1_type -1474 1138 336 417 277 174 0 chr4 107806411 107806566 -76482096 + MIR3 SINE MIR 27 208 0 1907 168 0 3 chr4 107806743 107807041 -76481621 + AluJb SINE Alu 1 297 -15 28 29 0 0 chr4 107807474 107807509 -76481153 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 107807545 107807566 -76481096 + AT_rich Low_complexity Low_complexity 1 21 0 411 271 28 0 chr4 107807768 107807875 -76480787 - MIR SINE MIR 0 262 153 730 46 0 18 chr4 107811273 107811382 -76477280 + (GA)n Simple_repeat Simple_repeat 2 108 0 22 0 0 0 chr4 107812386 107812408 -76476254 + AT_rich Low_complexity Low_complexity 1 22 0 2357 102 7 0 chr4 107812744 107813049 -76475613 + AluSx SINE Alu 1 307 -5 491 124 9 19 chr4 107813061 107813166 -76475496 + L1PA16 LINE L1 6063 6166 0 316 220 0 0 chr4 107813935 107813992 -76474670 - MIR SINE MIR -15 247 191 357 270 182 20 chr4 107813992 107814140 -76474522 - MER5B DNA MER1_type 0 178 7 383 230 236 31 chr4 107814143 107814304 -76474358 - MIR SINE MIR -61 201 8 192 243 243 70 chr4 107815271 107815485 -76473177 - MIR SINE MIR -11 251 1 224 305 24 12 chr4 107815974 107816056 -76472606 - L2 LINE L2 -2 3270 3188 2098 104 4 0 chr4 107819541 107819847 -76468815 + AluY SINE Alu 1 307 0 1068 92 0 0 chr4 107820945 107821075 -76467587 + AluSg SINE Alu 1 130 -180 2705 216 80 44 chr4 107821283 107822206 -76466456 - L1ME2 LINE L1 -9 6155 5201 1760 200 23 3 chr4 107822206 107822506 -76466156 - AluJo SINE Alu -6 306 1 2705 216 80 44 chr4 107822506 107822534 -76466128 - L1ME2 LINE L1 -963 5201 5175 * 5763 152 17 6 chr4 107822530 107824466 -76464196 - L1PB1 LINE L1 -1 6150 4191 355 186 0 0 chr4 107824482 107824568 -76464094 - L1ME2 LINE L1 -960 5186 5101 502 61 0 0 chr4 107824570 107824636 -76464026 - L1PB1 LINE L1 -57 6094 6029 2048 260 25 9 chr4 107824685 107825477 -76463185 - L1ME2 LINE L1 -1096 5050 4246 1608 173 25 25 chr4 107825706 107825989 -76462673 + AluJo SINE Alu 11 293 -19 1524 174 44 10 chr4 107826852 107827146 -76461516 - AluJo SINE Alu -8 304 1 1984 136 3 14 chr4 107827359 107827654 -76461008 + AluSx SINE Alu 1 292 -20 2040 137 17 0 chr4 107828307 107828606 -76460056 + AluSx SINE Alu 1 304 -8 1251 227 81 11 chr4 107828775 107829234 -76459428 - MER20B DNA MER1_type -60 723 233 413 304 9 0 chr4 107829236 107829348 -76459314 + MER5B DNA MER1_type 17 129 -49 284 335 116 0 chr4 107829315 107829417 -76459245 + MER5A DNA MER1_type 7 96 -93 * 1313 150 4 33 chr4 107829417 107829691 -76458971 + L1MA4 LINE L1 6035 6300 0 284 335 116 0 chr4 107829691 107829752 -76458910 + MER5A DNA MER1_type 96 189 0 519 289 22 43 chr4 107829753 107829985 -76458677 - MER20B DNA MER1_type -528 255 29 41621 45 3 1 chr4 107830225 107836364 -76452298 + L1PA4 LINE L1 1 6154 -1 2167 118 155 11 chr4 107836950 107837324 -76451338 - MSTA LTR MaLR 0 428 1 739 231 96 0 chr4 107837579 107837735 -76450927 - AluJb SINE Alu -141 171 1 21 0 0 31 chr4 107838145 107838162 -76450500 + AT_rich Low_complexity Low_complexity 1 18 -13 2371 113 11 3 chr4 107838162 107838526 -76450136 - L1PB1 LINE L1 -3 6148 5782 21 0 0 31 chr4 107838526 107838540 -76450122 + AT_rich Low_complexity Low_complexity 18 31 0 246 148 0 0 chr4 107838556 107838610 -76450052 + (TA)n Simple_repeat Simple_repeat 2 55 0 503 240 0 0 chr4 107838712 107838808 -76449854 + AluJ/FLAM SINE Alu 1 96 -216 201 39 0 0 chr4 107838808 107838834 -76449828 + (TA)n Simple_repeat Simple_repeat 2 27 0 2639 88 0 0 chr4 107838834 107839208 -76449454 - L1P5 LINE L1 -373 5778 5405 224 264 0 0 chr4 107839912 107839965 -76448697 + L2 LINE L2 3220 3272 0 180 0 0 0 chr4 107840018 107840038 -76448624 + (TG)n Simple_repeat Simple_repeat 2 21 0 467 215 138 15 chr4 107841629 107841759 -76446903 + MER5B DNA MER1_type 3 148 -30 216 0 0 0 chr4 107841787 107841811 -76446851 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 585 350 57 14 chr4 107842222 107842714 -76445948 + L1MC4a LINE L1 4954 5466 -743 494 288 71 19 chr4 107842776 107843134 -76445528 + L1MC4a LINE L1 5554 5776 -345 798 236 56 83 chr4 107844814 107845380 -76443282 - L1MD3 LINE L1 0 8042 7518 1813 68 68 0 chr4 107845517 107845766 -76442896 + L1PA5 LINE L1 5882 6147 -7 3380 91 43 0 chr4 107846428 107846942 -76441720 - L1MA2 LINE L1 0 6304 5769 342 281 62 65 chr4 107846954 107847214 -76441448 - HAL1b LINE L1 -441 907 649 23 0 0 0 chr4 107847616 107847639 -76441023 + AT_rich Low_complexity Low_complexity 1 23 0 624 339 239 7 chr4 107847820 107848381 -76440281 - L3 LINE CR1 -863 714 24 189 0 0 0 chr4 107848593 107848614 -76440048 + (TG)n Simple_repeat Simple_repeat 2 22 0 318 264 21 0 chr4 107848640 107848784 -76439878 + (TA)n Simple_repeat Simple_repeat 2 148 0 1219 139 34 4 chr4 107848785 107849023 -76439639 - L1MA7 LINE L1 -27 6264 6020 304 194 0 0 chr4 107849041 107849103 -76439559 - L1M2 LINE L1 -4278 2073 2012 5649 241 30 27 chr4 107849120 107850772 -76437890 - L1M2 LINE L1 -4466 1885 246 891 211 23 54 chr4 107851738 107851999 -76436663 - L1M2 LINE L1 -6028 253 1 727 265 0 0 chr4 107852035 107852201 -76436461 + FRAM SINE Alu 1 166 0 559 232 18 0 chr4 107853641 107853805 -76434857 + GA-rich Low_complexity Low_complexity 4 170 0 35 41 0 0 chr4 107853990 107854039 -76434623 + AT_rich Low_complexity Low_complexity 1 49 0 608 176 8 0 chr4 107856464 107856583 -76432079 + Tigger7 DNA MER2_type 1 120 -2367 1735 156 5 97 chr4 107856686 107857089 -76431573 + Tigger7 DNA MER2_type 131 496 -1991 499 238 14 138 chr4 107857090 107857380 -76431282 - MSTD LTR MaLR -2 394 141 2652 147 165 0 chr4 107858258 107858762 -76429900 - LTR69 LTR ERVL -1 587 1 217 146 0 36 chr4 107859057 107859112 -76429550 + (GAAA)n Simple_repeat Simple_repeat 3 55 0 332 317 0 0 chr4 107860649 107860753 -76427909 + GA-rich Low_complexity Low_complexity 1 104 0 647 280 33 22 chr4 107861248 107861430 -76427232 + MIR3 SINE MIR 21 204 -4 21 0 0 0 chr4 107861562 107861583 -76427079 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 107862031 107862055 -76426607 + AT_rich Low_complexity Low_complexity 1 24 0 198 0 0 0 chr4 107862090 107862112 -76426550 + (T)n Simple_repeat Simple_repeat 1 22 0 1941 113 0 0 chr4 107862127 107862375 -76426287 - AluSx SINE Alu -64 248 1 711 225 21 113 chr4 107863229 107863469 -76425193 - MIR SINE MIR 0 262 45 254 267 162 0 chr4 107863730 107863835 -76424827 + LTR16A LTR ERVL 2 123 -327 417 321 52 19 chr4 107863884 107864155 -76424507 + MLT1-int LTR MaLR 292 571 -800 28 48 0 0 chr4 107864498 107864540 -76424122 + AT_rich Low_complexity Low_complexity 1 42 0 338 286 163 31 chr4 107864786 107864982 -76423680 + MIR SINE MIR 15 236 -26 454 320 53 0 chr4 107865401 107865551 -76423111 + MIR3 SINE MIR 48 205 -3 23 33 0 0 chr4 107866563 107866593 -76422069 + AT_rich Low_complexity Low_complexity 1 30 0 431 241 0 0 chr4 107866822 107866905 -76421757 - MER81 DNA DNA -9 105 23 * 439 200 11 0 chr4 107866902 107866997 -76421665 - LTR40a LTR ERVL -48 471 376 * 645 159 30 119 chr4 107866984 107867185 -76421477 - LTR40a LTR ERVL -314 205 23 634 213 153 22 chr4 107867199 107867382 -76421280 - MIR SINE MIR -48 214 8 1491 170 59 38 chr4 107867672 107867960 -76420702 + AluJo SINE Alu 3 296 -16 2904 209 69 53 chr4 107868586 107869326 -76419336 + L1ME2 LINE L1 4877 5640 -524 1527 163 48 4 chr4 107869326 107869577 -76419085 - AluSx SINE Alu -50 262 1 2904 209 69 53 chr4 107869577 107870102 -76418560 + L1ME2 LINE L1 5640 6155 -9 7031 51 35 2 chr4 107870726 107871595 -76417067 + MER11D LTR ERVK 1 897 0 22857 30 2 0 chr4 107871603 107874382 -76414280 + HERVK11D LTR ERVK 4967 7752 0 2988 52 0 0 chr4 107874382 107874751 -76413911 + MER11D LTR ERVK 1 369 -528 17943 74 23 7 chr4 107874751 107878053 -76410609 + L1PA7 LINE L1 2779 6146 -8 356 91 35 11 chr4 107879233 107879306 -76409356 + Alu SINE Alu 2 57 -242 216 263 70 31 chr4 107879327 107879490 -76409172 + MIR SINE MIR 59 262 0 * 289 303 9 9 chr4 107879486 107879595 -76409067 - MIR SINE MIR -105 157 49 2045 129 0 0 chr4 107879887 107880173 -76408489 + AluSx SINE Alu 1 286 -26 864 114 0 0 chr4 107880178 107880309 -76408353 + (GGAA)n Simple_repeat Simple_repeat 3 133 0 2371 99 0 0 chr4 107880751 107881054 -76407608 + AluSx SINE Alu 1 303 -9 387 292 71 18 chr4 107881147 107881260 -76407402 + MIR3 SINE MIR 83 201 -7 1411 164 0 9 chr4 107882345 107882558 -76406104 - AluJb SINE Alu -101 211 1 217 274 105 11 chr4 107882856 107882951 -76405711 + MER5A DNA MER1_type 3 106 -83 2417 101 0 0 chr4 107883339 107883646 -76405016 + AluSg SINE Alu 1 307 -3 21 0 0 0 chr4 107883853 107883874 -76404788 + AT_rich Low_complexity Low_complexity 1 21 0 545 308 110 57 chr4 107883974 107884138 -76404524 - L2 LINE L2 0 3272 3118 890 137 0 0 chr4 107884138 107884269 -76404393 + FLAM_C SINE Alu 1 131 -2 545 308 110 57 chr4 107884269 107884658 -76404004 - L2 LINE L2 -154 3118 2689 238 71 24 0 chr4 107885179 107885221 -76403441 + MADE1 DNA Mariner 1 43 -37 27 81 0 0 chr4 107885373 107885435 -76403227 + AT_rich Low_complexity Low_complexity 1 62 0 231 349 24 24 chr4 107885882 107886008 -76402654 + MLT1J LTR MaLR 277 402 -109 2310 95 3 10 chr4 107886104 107886408 -76402254 - AluSc SINE Alu -7 302 1 239 273 33 107 chr4 107887858 107887979 -76400683 - MER5A DNA MER1_type -77 112 1 209 296 131 73 chr4 107888267 107888758 -76399904 - L2 LINE L2 -454 2860 2399 1795 130 19 55 chr4 107888758 107889066 -76399596 + AluSx SINE Alu 1 297 -15 209 296 131 73 chr4 107889066 107889452 -76399210 - L2 LINE L2 -915 2399 1932 233 151 151 19 chr4 107889513 107889566 -76399096 - L2 LINE L2 0 3272 3213 353 300 95 29 chr4 107890261 107890471 -76398191 - L2 LINE L2 -96 3217 2994 1764 178 21 0 chr4 107890892 107891179 -76397483 + AluJo SINE Alu 1 293 -19 393 320 73 41 chr4 107891429 107891648 -76397014 - MIR SINE MIR -8 254 29 204 269 140 0 chr4 107894136 107894221 -76394441 - MIR SINE MIR -67 141 53 612 328 64 33 chr4 107894516 107894970 -76393692 - L2 LINE L2 -2 3311 2844 23 0 0 0 chr4 107895148 107895171 -76393491 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 107895352 107895375 -76393287 + AT_rich Low_complexity Low_complexity 1 23 0 204 97 0 0 chr4 107896627 107896658 -76392004 + (TTA)n Simple_repeat Simple_repeat 2 32 0 474 143 9 67 chr4 107896658 107896763 -76391899 - FRAM SINE Alu -28 148 50 37 23 0 0 chr4 107896964 107897008 -76391654 + AT_rich Low_complexity Low_complexity 1 44 0 844 116 0 0 chr4 107897070 107897191 -76391471 - THE1B LTR MaLR 0 364 244 2367 94 3 0 chr4 107897277 107897576 -76391086 - AluSp SINE Alu -13 300 1 301 95 16 71 chr4 107897850 107897976 -76390686 + (TATTG)n Simple_repeat Simple_repeat 2 120 0 312 157 41 35 chr4 107897978 107898150 -76390512 + (CATATA)n Simple_repeat Simple_repeat 3 175 0 2129 76 90 0 chr4 107898290 107898567 -76390095 - AluY SINE Alu -9 302 1 186 43 0 0 chr4 107899376 107899399 -76389263 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 233 264 0 19 chr4 107899859 107899912 -76388750 + MER5A DNA MER1_type 138 189 0 2477 70 7 0 chr4 107899996 107900297 -76388365 + AluSp SINE Alu 1 303 -10 22 35 0 0 chr4 107900692 107900721 -76387941 + AT_rich Low_complexity Low_complexity 1 29 0 309 248 184 0 chr4 107901780 107901889 -76386773 + MIR SINE MIR 23 151 -111 1911 164 68 34 chr4 107902114 107902584 -76386078 + L1PB4 LINE L1 4536 5021 -1125 2256 112 0 0 chr4 107902927 107903223 -76385439 + AluSx SINE Alu 1 296 -16 1182 189 28 11 chr4 107903517 107903803 -76384859 + L1PB4 LINE L1 5010 5300 -846 1207 158 0 6 chr4 107903812 107903995 -76384667 + AluJb SINE Alu 88 269 -43 342 0 0 0 chr4 107903998 107904036 -76384626 + (CA)n Simple_repeat Simple_repeat 2 39 0 907 158 22 3 chr4 107904039 107904050 -76384612 + L1PB4 LINE L1 5292 5301 -855 2194 94 24 3 chr4 107904050 107904347 -76384315 + AluSq SINE Alu 1 303 -10 907 158 22 3 chr4 107904347 107904537 -76384125 + L1PB4 LINE L1 5301 5491 -665 2886 78 41 33 chr4 107904542 107905001 -76383661 + L1MA2 LINE L1 5842 6304 0 3087 158 50 33 chr4 107905010 107905074 -76383588 + L1PB4 LINE L1 5474 5535 -621 2049 145 0 3 chr4 107905074 107905377 -76383285 - AluJb SINE Alu -10 302 1 3087 158 50 33 chr4 107905377 107905978 -76382684 + L1PB4 LINE L1 5535 6150 -6 829 176 0 0 chr4 107906302 107906427 -76382235 - FLAM_C SINE Alu -18 125 1 2354 91 0 0 chr4 107906976 107907273 -76381389 + AluSx SINE Alu 1 297 -15 2119 107 45 28 chr4 107907372 107907727 -76380935 - MER46B DNA MER2_type 0 236 1 608 324 5 10 chr4 107907916 107908123 -76380539 + MIR SINE MIR 2 207 -55 382 219 0 42 chr4 107908839 107908935 -76379727 - MER5A DNA MER1_type -83 106 15 21 0 0 0 chr4 107909935 107909956 -76378706 + AT_rich Low_complexity Low_complexity 1 21 0 1145 188 18 18 chr4 107910286 107910461 -76378201 - AluJo SINE Alu -4 308 131 2065 142 3 0 chr4 107910461 107910770 -76377892 - AluSx SINE Alu -2 310 1 1145 188 18 18 chr4 107910770 107910817 -76377845 - AluJo SINE Alu -180 132 86 210 273 0 91 chr4 107912058 107912135 -76376527 - MER5B DNA MER1_type -108 70 1 1780 169 20 0 chr4 107912625 107912920 -76375742 + AluJo SINE Alu 1 301 -11 2294 101 0 0 chr4 107913604 107913900 -76374762 + AluSx SINE Alu 1 296 -16 215 308 15 0 chr4 107913930 107913995 -76374667 - L2 LINE L2 -2 3270 3205 244 185 0 0 chr4 107914766 107914820 -76373842 - LTR66 LTR ERVL -163 447 394 306 164 0 0 chr4 107914822 107914877 -76373785 + (TA)n Simple_repeat Simple_repeat 1 55 0 2400 99 0 0 chr4 107914877 107915179 -76373483 - AluSq SINE Alu -11 302 1 251 315 139 9 chr4 107915421 107915529 -76373133 - L2 LINE L2 0 3272 3151 304 270 57 75 chr4 107916025 107916184 -76372478 - L1MC/D LINE L1 -2325 5483 5328 312 48 0 0 chr4 107916314 107916356 -76372306 + (CA)n Simple_repeat Simple_repeat 2 43 0 336 277 108 50 chr4 107917273 107917533 -76371129 + L1MC4a LINE L1 5650 5924 -1884 2918 189 50 5 chr4 107917554 107918173 -76370489 - MER82 DNA MER2_type -1 652 6 1773 159 20 14 chr4 107918567 107918862 -76369800 - AluJo SINE Alu -15 297 1 356 348 132 15 chr4 107918997 107919201 -76369461 - MIR SINE MIR -1 261 34 694 289 127 25 chr4 107919376 107919739 -76368923 + L2 LINE L2 2910 3309 -4 459 315 94 5 chr4 107920296 107920499 -76368163 - MIR SINE MIR -14 248 28 1759 133 98 3 chr4 107920701 107920986 -76367676 + AluJb SINE Alu 1 312 0 1027 174 0 0 chr4 107921062 107921223 -76367439 - AluJb SINE Alu -18 294 134 237 229 168 76 chr4 107921804 107921935 -76366727 + MIR3 SINE MIR 2 144 -64 2137 88 10 10 chr4 107922548 107922842 -76365820 + AluSc SINE Alu 1 294 -15 417 149 0 0 chr4 107923752 107923819 -76364843 - AluJo SINE Alu -14 298 232 846 142 118 12 chr4 107923819 107923871 -76364791 - AluJo SINE Alu -125 187 142 489 17 0 0 chr4 107923871 107923929 -76364733 + (TATG)n Simple_repeat Simple_repeat 3 60 0 846 142 118 12 chr4 107923929 107924045 -76364617 - AluJo SINE Alu -170 142 1 1841 162 10 13 chr4 107924443 107924745 -76363917 + AluSx SINE Alu 1 301 -11 497 285 176 0 chr4 107924947 107925140 -76363522 + MIR SINE MIR 34 260 -2 1215 169 0 0 chr4 107925181 107925365 -76363297 - AluJb SINE Alu -22 290 107 409 136 0 0 chr4 107925365 107925424 -76363238 - AluS SINE Alu -259 59 1 2381 104 0 0 chr4 107925441 107925749 -76362913 - AluSx SINE Alu -4 308 1 2226 113 3 31 chr4 107925951 107926321 -76362341 - AluSq SINE Alu 0 361 1 1712 232 71 0 chr4 107926560 107926999 -76361663 - MER82 DNA MER2_type 0 653 184 * 3311 169 50 74 chr4 107926997 107927332 -76361330 + MER21A LTR ERV1 5 347 -584 2066 108 7 11 chr4 107927332 107927651 -76361011 + AluSq SINE Alu 1 318 0 3311 169 50 74 chr4 107927651 107927882 -76360780 + MER21A LTR ERV1 347 582 -349 1711 173 16 7 chr4 107927882 107928188 -76360474 - AluJo SINE Alu -1 311 3 3311 169 50 74 chr4 107928188 107928518 -76360144 + MER21A LTR ERV1 582 925 -6 914 216 5 5 chr4 107928530 107928720 -76359942 - MER82 DNA MER2_type -463 190 1 252 0 0 0 chr4 107929909 107929937 -76358725 + (TAA)n Simple_repeat Simple_repeat 3 30 0 1655 67 36 0 chr4 107930007 107930231 -76358431 + L1PA14 LINE L1 5928 6159 -2 21 89 0 0 chr4 107930318 107930374 -76358288 + AT_rich Low_complexity Low_complexity 1 56 0 2073 136 0 7 chr4 107930396 107930697 -76357965 - AluSx SINE Alu -13 299 1 37 52 0 0 chr4 107931233 107931291 -76357371 + AT_rich Low_complexity Low_complexity 1 58 0 1955 141 7 0 chr4 107931333 107931623 -76357039 + AluSx SINE Alu 1 292 -20 193 234 108 63 chr4 107931634 107931745 -76356917 + MIR SINE MIR 122 237 -25 426 200 227 33 chr4 107931794 107931944 -76356718 - MIR SINE MIR -54 208 30 2115 131 3 0 chr4 107932382 107932694 -76355968 - AluSg SINE Alu 0 313 1 2285 74 14 0 chr4 107932984 107933268 -76355394 - AluSp SINE Alu -25 288 1 1507 219 7 7 chr4 107933396 107933683 -76354979 + AluJo SINE Alu 6 292 -20 185 0 40 0 chr4 107933689 107933714 -76354948 + (TAA)n Simple_repeat Simple_repeat 2 27 0 606 282 135 15 chr4 107933805 107934071 -76354591 + MLT1L LTR MaLR 310 607 -8 1900 127 13 42 chr4 107934500 107934807 -76353855 + AluSg SINE Alu 1 298 -12 1342 176 18 0 chr4 107934809 107935030 -76353632 + AluJo SINE Alu 1 225 -87 2246 113 0 3 chr4 107935457 107935750 -76352912 + AluSq SINE Alu 1 292 -21 180 135 0 0 chr4 107936595 107936632 -76352030 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 1454 152 13 113 chr4 107936636 107936946 -76351716 - AluJo SINE Alu -33 279 1 1699 206 0 3 chr4 107937089 107937385 -76351277 + AluJo SINE Alu 1 295 -17 1778 163 0 7 chr4 107937399 107937681 -76350981 + AluJb SINE Alu 1 280 -32 180 0 0 0 chr4 107937681 107937701 -76350961 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 2450 70 3 0 chr4 107938861 107939160 -76349502 + AluSp SINE Alu 1 300 -13 499 134 0 35 chr4 107939177 107939331 -76349331 + MER4E LTR ERV1 1 191 -588 1742 178 47 18 chr4 107939418 107939805 -76348857 + MER4D LTR ERV1 506 903 0 1516 173 83 4 chr4 107939956 107940214 -76348448 + AluJb SINE Alu 1 284 -28 189 0 0 0 chr4 107940214 107940235 -76348427 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 1516 173 83 4 chr4 107940235 107940254 -76348408 + AluJb SINE Alu 284 300 -12 270 330 203 4 chr4 107940272 107940499 -76348163 + L3 LINE CR1 274 545 -1032 2293 113 0 0 chr4 107942144 107942454 -76346208 + AluSg SINE Alu 1 310 0 270 146 0 0 chr4 107942722 107942770 -76345892 + Charlie2a DNA MER1_type 742 789 -2073 1940 134 53 0 chr4 107942774 107943057 -76345605 + AluSx SINE Alu 4 301 -11 495 123 0 0 chr4 107943057 107943138 -76345524 + (TA)n Simple_repeat Simple_repeat 1 81 0 455 217 94 0 chr4 107943165 107943303 -76345359 + Charlie2a DNA MER1_type 821 971 -1891 396 205 170 0 chr4 107943311 107943423 -76345239 + Charlie2a DNA MER1_type 2731 2861 -1 1737 108 56 4 chr4 107943700 107943949 -76344713 + AluSq SINE Alu 39 300 -13 227 299 64 32 chr4 107944055 107944212 -76344450 + L1ME4a LINE L1 5960 6121 0 2260 92 10 13 chr4 107944841 107945147 -76343515 + AluSp SINE Alu 1 305 -8 1722 159 3 25 chr4 107945236 107945519 -76343143 + AluJo SINE Alu 6 282 -30 221 0 0 33 chr4 107945529 107945540 -76343122 + (GA)n Simple_repeat Simple_repeat 2 12 -18 2154 114 3 23 chr4 107945540 107945848 -76342814 + AluSx SINE Alu 1 302 -10 221 0 0 33 chr4 107945848 107945866 -76342796 + (GA)n Simple_repeat Simple_repeat 12 30 0 2452 71 3 0 chr4 107945922 107946217 -76342445 + AluY SINE Alu 1 296 -15 2179 103 0 0 chr4 107946739 107947040 -76341622 - AluSx SINE Alu 0 301 1 2126 128 3 10 chr4 107947042 107947354 -76341308 - AluSx SINE Alu -2 310 1 479 105 145 0 chr4 107947945 107948021 -76340641 + AluSq SINE Alu 151 237 -76 2196 128 3 0 chr4 107948143 107948455 -76340207 + AluSq SINE Alu 1 313 0 21 0 0 0 chr4 107948889 107948910 -76339752 + AT_rich Low_complexity Low_complexity 1 21 0 1955 145 3 0 chr4 107949557 107949864 -76338798 + AluSx SINE Alu 1 308 0 1708 79 0 9 chr4 107951439 107951654 -76337008 - AluSq SINE Alu -100 213 1 21 0 0 0 chr4 107951654 107951675 -76336987 + AT_rich Low_complexity Low_complexity 1 21 0 249 33 0 0 chr4 107955274 107955304 -76333358 + (CCCCCA)n Simple_repeat Simple_repeat 4 33 0 2193 108 7 0 chr4 107955960 107956265 -76332397 + AluSx SINE Alu 1 307 -5 2062 105 54 10 chr4 107956424 107956719 -76331943 - AluSg SINE Alu -2 308 1 182 264 38 0 chr4 107956843 107956896 -76331766 + L2 LINE L2 3257 3311 -2 1453 161 62 0 chr4 107956948 107957190 -76331472 + AluJb SINE Alu 35 291 -21 2171 126 0 0 chr4 107957392 107957685 -76330977 - AluSx SINE Alu -19 293 1 242 309 218 13 chr4 107957714 107958090 -76330572 - L2 LINE L2 -54 3259 2807 1680 154 0 35 chr4 107958264 107958550 -76330112 + AluJb SINE Alu 13 288 -24 566 194 136 61 chr4 107958635 107958914 -76329748 - LTR21B LTR ERV1 0 438 139 2113 310 22 21 chr4 107959003 107959361 -76329301 - HERVFH21 LTR ERV1 0 6529 6173 207 0 0 0 chr4 107959361 107959384 -76329278 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2113 310 22 21 chr4 107959384 107959892 -76328770 - HERVFH21 LTR ERV1 -356 6173 5662 279 221 89 82 chr4 107960070 107960228 -76328434 + L1MC4a LINE L1 5752 5910 -1898 819 246 138 11 chr4 107960293 107960561 -76328101 + AluJb SINE Alu 1 302 0 1941 104 0 4 chr4 107961084 107961344 -76327318 + AluSg SINE Alu 38 296 -14 1786 161 6 25 chr4 107961506 107961822 -76326840 - AluJo SINE Alu -2 310 1 1266 199 118 148 chr4 107962332 107962840 -76325822 - MLT1C LTR MaLR -6 499 7 342 319 67 0 chr4 107962894 107963029 -76325633 - MIR SINE MIR -107 155 12 492 288 109 31 chr4 107963512 107963741 -76324921 - MIR SINE MIR 0 262 16 1440 161 36 76 chr4 107963833 107963954 -76324708 + AluJo SINE Alu 3 127 -185 2012 145 0 0 chr4 107963954 107964273 -76324389 - AluSx SINE Alu 0 319 1 1440 161 36 76 chr4 107964273 107964454 -76324208 + AluJo SINE Alu 127 294 -18 2149 117 3 10 chr4 107964980 107965280 -76323382 - AluSg SINE Alu -12 298 1 276 256 30 133 chr4 107965613 107965816 -76322846 + MIR SINE MIR 70 251 -11 2485 86 0 0 chr4 107966131 107966435 -76322227 + AluSg SINE Alu 1 304 -6 2170 107 43 0 chr4 107966533 107966833 -76321829 - AluSp SINE Alu 0 313 1 698 161 0 0 chr4 107966833 107966945 -76321717 - AluSx SINE Alu -18 292 181 891 110 8 0 chr4 107966945 107967063 -76321599 - AluSx SINE Alu -169 143 25 2216 111 0 10 chr4 107967255 107967583 -76321079 + AluSq SINE Alu 4 313 0 1073 167 12 67 chr4 107968512 107968562 -76320100 + AluJb SINE Alu 86 137 -234 2695 48 0 0 chr4 107968562 107968873 -76319789 + AluY SINE Alu 1 311 0 1073 167 12 67 chr4 107968873 107969121 -76319541 + AluJb SINE Alu 137 371 0 606 193 0 9 chr4 107969261 107969375 -76319287 - FRAM SINE Alu -24 152 40 1755 158 0 43 chr4 107969553 107969856 -76318806 - AluJb SINE Alu -16 296 7 650 256 25 40 chr4 107969889 107969977 -76318685 + MIR3 SINE MIR 6 94 -114 2181 185 64 60 chr4 107969977 107970035 -76318627 - MLT2B1 LTR ERVL 0 520 464 2323 106 0 3 chr4 107970035 107970337 -76318325 + AluSx SINE Alu 2 302 -10 2181 185 64 60 chr4 107970337 107970473 -76318189 - MLT2B1 LTR ERVL -56 464 330 2107 121 22 26 chr4 107970473 107970786 -76317876 + AluSx SINE Alu 1 312 0 2181 185 64 60 chr4 107970786 107971108 -76317554 - MLT2B1 LTR ERVL -190 330 1 650 256 25 40 chr4 107971108 107971218 -76317444 + MIR3 SINE MIR 94 201 -7 3428 143 33 41 chr4 107971892 107972266 -76316396 - LTR26 LTR ERV1 0 603 234 2384 103 0 0 chr4 107972266 107972576 -76316086 - AluSg SINE Alu 0 310 1 3428 143 33 41 chr4 107972576 107972809 -76315853 - LTR26 LTR ERV1 -369 234 1 183 129 0 0 chr4 107972886 107972917 -76315745 + (TTTC)n Simple_repeat Simple_repeat 3 33 0 377 262 29 0 chr4 107972935 107973038 -76315624 + MLT1K LTR MaLR 143 248 -340 2523 108 6 3 chr4 107973646 107973999 -76314663 - THE1A LTR MaLR -1 354 1 11598 97 13 0 chr4 107973999 107975559 -76313103 - THE1A-int LTR MaLR 0 1580 1 2702 91 3 3 chr4 107975559 107975912 -76312750 - THE1A LTR MaLR 0 355 3 702 164 0 0 chr4 107976361 107976471 -76312191 - AluJb SINE Alu -5 307 198 1242 194 157 42 chr4 107976471 107976929 -76311733 - LTR1B LTR ERV1 0 785 279 303 28 0 0 chr4 107976934 107976970 -76311692 + (TTCTC)n Simple_repeat Simple_repeat 2 37 0 1169 110 48 62 chr4 107976978 107977187 -76311475 - LTR1B LTR ERV1 -620 206 1 399 206 0 0 chr4 107977187 107977252 -76311410 - FLAM_A SINE Alu -67 65 1 2031 141 3 3 chr4 107977256 107977553 -76311109 - AluSx SINE Alu -15 297 1 207 167 0 0 chr4 107977639 107977681 -76310981 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 339 320 48 44 chr4 107978015 107978221 -76310441 - MIR SINE MIR -24 238 32 1060 167 0 0 chr4 107978231 107978387 -76310275 - AluSg/x SINE Alu -20 290 135 558 213 128 6 chr4 107978476 107978640 -76310022 + MIR SINE MIR 66 249 -13 180 309 109 64 chr4 107978689 107978799 -76309863 - L2 LINE L2 -234 3038 2924 204 292 142 0 chr4 107978810 107978930 -76309732 - MIR SINE MIR 0 262 126 2363 175 48 57 chr4 107979330 107979895 -76308767 + L1MB8 LINE L1 5619 6178 0 1996 122 6 45 chr4 107980054 107980366 -76308296 - AluSx SINE Alu -11 301 2 545 189 49 14 chr4 107980716 107980859 -76307803 + MER65B LTR ERV1 1 148 -383 198 0 0 0 chr4 107980981 107981003 -76307659 + (T)n Simple_repeat Simple_repeat 1 22 0 206 250 16 16 chr4 107981363 107981427 -76307235 - L2 LINE L2 -217 3055 2992 261 352 39 0 chr4 107981514 107981642 -76307020 + MIR SINE MIR 46 178 -84 2332 108 0 0 chr4 107981707 107982013 -76306649 - AluSx SINE Alu -6 306 1 460 259 58 99 chr4 107982400 107982593 -76306069 - Charlie8 DNA MER1_type -1917 500 322 2405 90 3 0 chr4 107982593 107982893 -76305769 + AluSq SINE Alu 1 301 -12 460 259 58 99 chr4 107982893 107982993 -76305669 - Charlie8 DNA MER1_type -2095 322 219 323 109 0 0 chr4 107983034 107983080 -76305582 - MADE1 DNA Mariner 0 80 35 521 154 9 55 chr4 107983086 107983196 -76305466 + FLAM_C SINE Alu 39 143 0 495 232 24 154 chr4 107983199 107983314 -76305348 - Charlie8 DNA MER1_type -124 217 89 1636 158 3 41 chr4 107983314 107983631 -76305031 + AluJb SINE Alu 1 306 0 2131 138 3 3 chr4 107983631 107983943 -76304719 + AluSx SINE Alu 1 312 0 495 232 24 154 chr4 107983943 107983980 -76304682 - Charlie8 DNA MER1_type -251 90 50 737 218 0 0 chr4 107983980 107984113 -76304549 - FLAM_C SINE Alu 0 133 1 495 232 24 154 chr4 107984113 107984202 -76304460 - Charlie8 DNA MER1_type -291 50 4 216 97 0 0 chr4 107984319 107984350 -76304312 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 241 233 200 0 chr4 107984469 107984559 -76304103 - L2 LINE L2 -831 2483 2376 2080 113 3 11 chr4 107984597 107984913 -76303749 + AluSx SINE Alu 1 314 0 2384 145 23 16 chr4 107985370 107985636 -76303026 - MLT1B LTR MaLR 0 390 119 2658 91 8 8 chr4 107985636 107986000 -76302662 - THE1B LTR MaLR 0 364 1 2384 145 23 16 chr4 107986000 107986120 -76302542 - MLT1B LTR MaLR -271 119 1 503 296 79 5 chr4 107986735 107986924 -76301738 - MIR SINE MIR -14 248 46 1842 183 0 0 chr4 107987176 107987465 -76301197 + AluJb SINE Alu 1 289 -23 189 0 0 0 chr4 107987504 107987525 -76301137 + (TC)n Simple_repeat Simple_repeat 2 22 0 2078 131 3 0 chr4 107987525 107987816 -76300846 - AluSg SINE Alu -18 292 1 2029 131 11 3 chr4 107987926 107988232 -76300430 - AluSx SINE Alu 0 308 1 407 370 46 14 chr4 107988412 107988628 -76300034 - L2 LINE L2 -196 3076 2854 1464 153 0 0 chr4 107988732 107988954 -76299708 + AluJo SINE Alu 87 308 -4 422 130 0 13 chr4 107988954 107989031 -76299631 + (GGAA)n Simple_repeat Simple_repeat 1 76 0 254 287 91 39 chr4 107989031 107989317 -76299345 - L2 LINE L2 -650 2664 2364 * 369 286 123 35 chr4 107989316 107989487 -76299175 + MIR SINE MIR 7 192 -70 846 203 0 0 chr4 107989988 107990223 -76298439 + (TG)n Simple_repeat Simple_repeat 1 235 0 223 227 53 0 chr4 107990226 107990301 -76298361 + (TGGA)n Simple_repeat Simple_repeat 1 79 0 224 135 0 19 chr4 107990428 107990480 -76298182 + (TG)n Simple_repeat Simple_repeat 2 52 0 906 210 17 23 chr4 107990702 107990878 -76297784 + FAM SINE Alu 1 175 0 686 113 0 0 chr4 107991110 107991207 -76297455 - AluSx SINE Alu -13 296 200 1146 68 0 0 chr4 107991225 107991358 -76297304 - AluSx SINE Alu -179 133 1 258 335 84 25 chr4 107991629 107991832 -76296830 + L2 LINE L2 2313 2527 -787 223 252 122 28 chr4 107991864 107991971 -76296691 - MIR SINE MIR -72 136 20 2321 105 7 0 chr4 107992040 107992345 -76296317 - AluSq SINE Alu -6 307 1 1754 207 58 56 chr4 107992602 107993100 -76295562 - MLT1D LTR MaLR -2 503 5 307 169 48 84 chr4 107994045 107994128 -76294534 + LTR33A LTR ERVL 444 523 0 861 160 0 0 chr4 107994288 107994413 -76294249 + FLAM_C SINE Alu 1 125 -18 203 0 0 36 chr4 107994417 107994445 -76294217 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1828 173 0 0 chr4 107994693 107995000 -76293662 + AluJb SINE Alu 1 307 0 2110 143 0 0 chr4 107995220 107995520 -76293142 + AluY SINE Alu 2 301 -10 2489 62 3 3 chr4 107995941 107996246 -76292416 - AluY SINE Alu -6 305 1 231 229 0 66 chr4 107996376 107996437 -76292225 + MLT1L LTR MaLR 1 57 -558 1572 248 41 56 chr4 107996785 107997265 -76291397 + L1MEc LINE L1 1790 2238 -3977 1965 168 0 0 chr4 107997265 107997575 -76291087 + AluJb SINE Alu 1 310 -2 1572 248 41 56 chr4 107997575 107997872 -76290790 + L1MEc LINE L1 2238 2538 -3677 51 52 0 10 chr4 107997932 107997962 -76290700 + AT_rich Low_complexity Low_complexity 1 30 -66 1935 139 0 33 chr4 107997962 107998265 -76290397 + AluJb SINE Alu 1 293 -19 51 52 0 10 chr4 107998265 107998331 -76290331 + AT_rich Low_complexity Low_complexity 30 96 0 455 338 113 6 chr4 107998335 107998655 -76290007 + L1M4 LINE L1 2303 2656 -3490 2175 130 3 0 chr4 107998705 107999004 -76289658 + AluSx SINE Alu 3 302 -10 1452 117 19 0 chr4 107999005 107999236 -76289426 + AluSg/x SINE Alu 72 306 0 789 108 70 39 chr4 107999457 107999586 -76289076 - FLAM_C SINE Alu 0 133 1 2075 136 0 0 chr4 107999741 108000063 -76288599 + AluSx SINE Alu 1 312 0 21 0 0 0 chr4 108000245 108000266 -76288396 + AT_rich Low_complexity Low_complexity 1 21 0 1757 178 0 48 chr4 108000290 108000604 -76288058 - AluJb SINE Alu -13 299 1 997 148 0 0 chr4 108000605 108000747 -76287915 - AluJb SINE Alu -170 142 1 435 110 24 24 chr4 108000749 108000831 -76287831 + L1 LINE L1 4608 4689 -1457 981 178 0 17 chr4 108000916 108001090 -76287572 - FRAM SINE Alu -5 171 1 881 188 0 0 chr4 108001218 108001367 -76287295 - FRAM SINE Alu -22 154 6 216 226 53 62 chr4 108001759 108001876 -76286786 + MIR SINE MIR 19 133 -75 2416 58 0 61 chr4 108002415 108002745 -76285917 + AluY SINE Alu 1 310 -1 2098 121 13 0 chr4 108002825 108003123 -76285539 + AluSx SINE Alu 2 303 -9 1289 208 140 4 chr4 108003849 108004113 -76284549 - AluJb SINE Alu -2 300 1 3830 140 51 36 chr4 108004661 108005312 -76283350 - LTR62 LTR ERVK -3 716 53 2008 133 10 3 chr4 108005312 108005605 -76283057 - AluSg SINE Alu -15 295 1 3830 140 51 36 chr4 108005605 108005645 -76283017 - LTR62 LTR ERVK -666 53 15 24 32 0 0 chr4 108005890 108005921 -76282741 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr4 108006164 108006194 -76282468 + AT_rich Low_complexity Low_complexity 1 30 0 836 277 0 0 chr4 108006787 108006993 -76281669 - L1ME3 LINE L1 0 6162 5957 1585 178 115 4 chr4 108008778 108009048 -76279614 - AluJo SINE Alu -2 300 1 734 98 0 0 chr4 108009078 108009207 -76279455 - AluSg/x SINE Alu 0 318 190 2221 122 0 0 chr4 108059277 108059573 -76229089 - AluSx SINE Alu -16 296 1 207 0 0 0 chr4 108060187 108060210 -76228452 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2273 94 7 3 chr4 108060619 108060916 -76227746 - AluSq SINE Alu -15 298 1 471 277 23 0 chr4 108061079 108061209 -76227453 - MER33 DNA MER1_type -191 133 1 845 226 0 0 chr4 108061263 108061427 -76227235 + FRAM SINE Alu 1 158 -18 263 275 38 0 chr4 108061674 108061754 -76226908 + L1ME LINE L1 5400 5482 -639 315 314 93 31 chr4 108061825 108062019 -76226643 - L2 LINE L2 -787 2527 2322 674 140 0 0 chr4 108062022 108062115 -76226547 + U6 snRNA snRNA 1 93 -14 255 143 71 36 chr4 108062594 108062678 -76225984 + Zaphod DNA AcHobo 671 757 -3274 43458 41 2 1 chr4 108062711 108067746 -76220916 - HERV17 LTR ERV1 -1633 6993 1952 250 159 0 23 chr4 108067733 108067777 -76220885 - HERV17 LTR ERV1 -8583 43 1 * 3897 63 44 4 chr4 108067777 108068282 -76220380 - LTR17 LTR ERV1 0 780 256 64 43 0 0 chr4 108068283 108068375 -76220287 + AT_rich Low_complexity Low_complexity 1 92 0 1660 190 7 3 chr4 108068375 108068664 -76219998 + AluSq SINE Alu 1 290 -23 198 71 0 0 chr4 108068671 108068699 -76219963 + (CAA)n Simple_repeat Simple_repeat 2 29 0 2054 131 25 42 chr4 108068700 108069169 -76219493 + L1MA9 LINE L1 5139 5609 -703 893 193 0 0 chr4 108069174 108069324 -76219338 + FRAM SINE Alu 5 154 -22 3441 159 63 0 chr4 108069331 108069452 -76219210 + L1MA9 LINE L1 5652 5764 -548 186 43 0 0 chr4 108069452 108069475 -76219187 + (CA)n Simple_repeat Simple_repeat 1 23 0 3441 159 63 0 chr4 108069475 108069827 -76218835 + L1MA9 LINE L1 5764 6176 -136 198 0 0 0 chr4 108069827 108069849 -76218813 + (CA)n Simple_repeat Simple_repeat 1 22 0 3441 159 63 0 chr4 108069849 108069996 -76218666 + L1MA9 LINE L1 6176 6312 0 1097 165 125 18 chr4 108070018 108070290 -76218372 - MER33 DNA MER1_type -22 302 2 1076 207 73 19 chr4 108070299 108070613 -76218049 + Zaphod DNA AcHobo 3595 3925 -106 851 195 6 0 chr4 108070672 108070866 -76217796 - AluJo SINE Alu 0 317 123 928 127 8 0 chr4 108070878 108071004 -76217658 + FLAM_C SINE Alu 1 127 -6 444 242 40 0 chr4 108071005 108071104 -76217558 + Zaphod DNA AcHobo 3929 4031 0 221 363 38 0 chr4 108071104 108071184 -76217478 + L2 LINE L2 2957 3039 -274 1780 165 46 108 chr4 108071184 108071682 -76216980 + MER110A LTR ERV1 1 467 -1 2144 113 0 13 chr4 108071747 108072057 -76216605 - AluSx SINE Alu -6 306 1 720 70 0 0 chr4 108072057 108072143 -76216519 - AluS SINE Alu -226 87 2 1440 130 0 32 chr4 108072422 108072638 -76216024 - AluJo SINE Alu -41 271 63 467 253 141 21 chr4 108073180 108073257 -76215405 - LTR50 LTR ERVL 0 795 729 2020 118 7 20 chr4 108073257 108073553 -76215109 + AluSx SINE Alu 1 292 -20 467 253 141 21 chr4 108073553 108073716 -76214946 - LTR50 LTR ERVL -66 729 526 * 1052 235 190 6 chr4 108073713 108074066 -76214596 - LTR50 LTR ERVL -377 418 1 214 336 75 9 chr4 108074564 108074671 -76213991 + MIR3 SINE MIR 83 196 -12 608 196 51 0 chr4 108075099 108075237 -76213425 + L1MA8 LINE L1 6145 6289 -2 238 237 0 0 chr4 108075254 108075313 -76213349 + L1M4 LINE L1 4496 4554 -1592 2114 128 0 0 chr4 108077839 108078128 -76210534 - AluSx SINE Alu -22 290 2 2290 107 0 10 chr4 108078388 108078697 -76209965 + AluSq SINE Alu 1 306 -7 22 0 0 0 chr4 108080739 108080761 -76207901 + AT_rich Low_complexity Low_complexity 1 22 0 252 255 11 33 chr4 108081039 108081130 -76207532 - MIR SINE MIR -63 145 83 1621 117 43 18 chr4 108081389 108081670 -76206992 + L1MA4 LINE L1 6013 6300 0 227 255 0 0 chr4 108081926 108081973 -76206689 + (TG)n Simple_repeat Simple_repeat 2 48 0 588 65 0 0 chr4 108082314 108082391 -76206271 + (TATG)n Simple_repeat Simple_repeat 2 78 0 2086 115 4 0 chr4 108082399 108082677 -76205985 - AluSx SINE Alu -32 280 2 252 0 0 0 chr4 108083415 108083443 -76205219 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 228 135 0 0 chr4 108083465 108083502 -76205160 + (GGAGA)n Simple_repeat Simple_repeat 5 41 0 205 356 169 22 chr4 108083919 108084144 -76204518 - L2 LINE L2 -461 2853 2596 1984 149 6 16 chr4 108084151 108084466 -76204196 + AluSx SINE Alu 1 312 0 38 39 0 0 chr4 108084566 108084618 -76204044 + AT_rich Low_complexity Low_complexity 1 52 0 571 265 73 5 chr4 108084731 108084950 -76203712 - L2 LINE L2 -907 2407 2174 244 280 19 19 chr4 108085088 108085102 -76203560 - L1MA10 LINE L1 -4 6330 6317 1273 245 42 18 chr4 108085102 108085486 -76203176 - L1ME2 LINE L1 -10 6154 5762 305 245 59 33 chr4 108085472 108085624 -76203038 - L1ME2 LINE L1 -1674 4472 4317 * 2689 172 39 74 chr4 108085633 108085777 -76202885 - L1MB8 LINE L1 -9 6169 6022 2363 106 0 0 chr4 108085777 108086088 -76202574 + AluSq SINE Alu 1 311 -2 2689 172 39 74 chr4 108086088 108086658 -76202004 - L1MB8 LINE L1 -156 6022 5476 896 139 8 0 chr4 108086658 108086787 -76201875 - FLAM_C SINE Alu -13 130 1 2510 80 61 17 chr4 108086899 108087153 -76201509 + MER51B LTR ERV1 1 277 -100 2383 88 0 7 chr4 108087153 108087458 -76201204 - AluSg SINE Alu -7 303 1 2510 80 61 17 chr4 108087458 108087564 -76201098 + MER51B LTR ERV1 277 377 0 603 271 92 8 chr4 108088054 108088462 -76200200 - LTR16B LTR ERVL 0 464 1 273 300 25 0 chr4 108088519 108088599 -76200063 + MIR3 SINE MIR 113 194 -14 2203 94 14 3 chr4 108088616 108088913 -76199749 - AluSq SINE Alu -13 300 1 220 234 0 0 chr4 108089002 108089049 -76199613 + (TAA)n Simple_repeat Simple_repeat 3 49 0 230 175 0 18 chr4 108089185 108089242 -76199420 - HAL1 LINE L1 -160 2347 2292 37 0 0 0 chr4 108089854 108089891 -76198771 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr4 108090022 108090044 -76198618 + AT_rich Low_complexity Low_complexity 1 22 0 386 71 0 0 chr4 108090059 108090115 -76198547 - MER41A LTR ERV1 -98 456 401 659 198 145 0 chr4 108090929 108091101 -76197561 + MER33 DNA MER1_type 4 200 -124 1453 189 4 8 chr4 108091132 108091386 -76197276 - AluJb SINE Alu -16 296 44 25 65 0 0 chr4 108092270 108092316 -76196346 + AT_rich Low_complexity Low_complexity 1 46 0 350 303 98 95 chr4 108092408 108092438 -76196224 - L2 LINE L2 0 3272 3244 393 52 0 0 chr4 108092438 108092496 -76196166 + L1MA4A LINE L1 6243 6300 -3 350 303 98 95 chr4 108092496 108092864 -76195798 - L2 LINE L2 -28 3244 2873 1282 188 0 0 chr4 108092961 108093179 -76195483 + AluJo SINE Alu 3 220 -92 1864 127 0 0 chr4 108093179 108093439 -76195223 + AluSx SINE Alu 40 299 -13 734 281 36 20 chr4 108093710 108093959 -76194703 + MIR SINE MIR 10 262 0 403 276 110 71 chr4 108094239 108094619 -76194043 - MLT1J LTR MaLR -59 452 51 2600 135 46 0 chr4 108094619 108095034 -76193628 - MER57B LTR ERV1 0 434 1 403 276 110 71 chr4 108095034 108095088 -76193574 - MLT1J LTR MaLR -460 51 1 682 256 243 30 chr4 108095304 108095605 -76193057 + L2 LINE L2 2352 2716 -598 358 223 50 22 chr4 108095608 108095747 -76192915 + L1MC5 LINE L1 7705 7847 -114 184 222 0 0 chr4 108095873 108095909 -76192753 - L2 LINE L2 -6 3307 3272 294 231 45 83 chr4 108095947 108096012 -76192650 + L2 LINE L2 3006 3072 -241 742 172 0 67 chr4 108096012 108096051 -76192611 - L1MB5 LINE L1 -6 6168 6128 1919 137 0 39 chr4 108096051 108096357 -76192305 + AluJo SINE Alu 1 294 -18 742 172 0 67 chr4 108096357 108096497 -76192165 - L1MB5 LINE L1 -46 6128 6001 294 231 45 83 chr4 108096497 108096569 -76192093 + L2 LINE L2 3072 3139 -174 2512 154 21 21 chr4 108096569 108097036 -76191626 - MLT1C LTR MaLR 0 467 1 294 231 45 83 chr4 108097036 108097053 -76191609 + L2 LINE L2 3139 3155 -158 2220 121 0 0 chr4 108097067 108097365 -76191297 - AluSx SINE Alu -14 298 1 505 274 0 0 chr4 108097489 108097613 -76191049 + L2 LINE L2 3190 3313 0 41 72 0 0 chr4 108097893 108097976 -76190686 + AT_rich Low_complexity Low_complexity 1 83 0 1449 208 27 14 chr4 108098032 108098326 -76190336 + AluJo SINE Alu 1 298 -14 413 188 0 10 chr4 108098662 108098758 -76189904 + GA-rich Low_complexity Low_complexity 2 96 0 1528 196 31 3 chr4 108098806 108099092 -76189570 + AluJo SINE Alu 1 294 -18 2505 66 0 0 chr4 108099096 108099400 -76189262 + AluY SINE Alu 1 304 -7 1979 100 0 0 chr4 108099669 108099920 -76188742 + AluSx SINE Alu 8 258 -54 1540 272 58 69 chr4 108100033 108100633 -76188029 - L2 LINE L2 0 3313 2708 2233 126 0 0 chr4 108100633 108100935 -76187727 - AluSx SINE Alu -10 302 1 1540 272 58 69 chr4 108100935 108101296 -76187366 - L2 LINE L2 -605 2708 2359 2298 78 0 4 chr4 108101296 108101625 -76187037 + AluSg SINE Alu 1 328 0 1540 272 58 69 chr4 108101625 108101761 -76186901 - L2 LINE L2 -954 2359 2223 4395 126 12 14 chr4 108102297 108103025 -76185637 - L1MA8 LINE L1 -10 6281 5555 207 229 104 0 chr4 108103465 108103513 -76185149 - L2 LINE L2 -6 3307 3255 244 239 0 30 chr4 108103568 108103635 -76185027 - HsTC2 DNA Tc2 -613 1285 1221 * 484 177 24 32 chr4 108103618 108103742 -76184920 - HsTC2 DNA Tc2 -1772 126 4 318 243 0 0 chr4 108103744 108103814 -76184848 - MIR SINE MIR -2 260 191 2529 217 119 14 chr4 108104876 108105587 -76183075 - L1MD2 LINE L1 -24 6335 5550 491 0 0 17 chr4 108105613 108105673 -76182989 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 41418 46 3 0 chr4 108105673 108111791 -76176871 - L1PA4 LINE L1 -17 6138 2 319 290 148 19 chr4 108112281 108112436 -76176226 + L2 LINE L2 2952 3126 -187 1823 166 7 19 chr4 108112439 108112473 -76176189 - LTR43 LTR ERV1 0 602 569 2200 136 123 5 chr4 108112473 108112856 -76175806 + MSTA LTR MaLR 1 428 0 9041 140 22 40 chr4 108112858 108114465 -76174197 + MSTA-int LTR MaLR 3 1580 0 1882 121 131 72 chr4 108114465 108114827 -76173835 + MSTA LTR MaLR 1 391 -37 2391 97 7 0 chr4 108114827 108115137 -76173525 - AluSp SINE Alu -1 312 1 1882 121 131 72 chr4 108115137 108115178 -76173484 + MSTA LTR MaLR 391 428 0 1823 166 7 19 chr4 108115178 108115685 -76172977 - LTR43 LTR ERV1 -32 570 1 596 271 62 11 chr4 108115687 108115864 -76172798 + L2 LINE L2 3128 3313 0 205 430 62 17 chr4 108115893 108116184 -76172478 + L2 LINE L2 2630 2933 -381 189 0 0 0 chr4 108116247 108116268 -76172394 + (TTG)n Simple_repeat Simple_repeat 2 22 0 380 83 37 46 chr4 108117367 108117475 -76171187 + (TCTA)n Simple_repeat Simple_repeat 4 110 0 2070 122 14 0 chr4 108117928 108118235 -76170427 + AluSx SINE Alu 1 311 0 560 321 27 16 chr4 108118353 108118801 -76169861 + L1MC/D LINE L1 4392 4846 -1300 1956 115 28 11 chr4 108118956 108119243 -76169419 + AluSx SINE Alu 1 292 -20 1961 149 42 20 chr4 108119256 108119612 -76169050 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr4 108119745 108119766 -76168896 + AT_rich Low_complexity Low_complexity 1 21 0 537 268 138 30 chr4 108119880 108120321 -76168341 + L1MC/D LINE L1 5254 5742 -2066 4551 219 71 42 chr4 108120985 108123378 -76165284 - L1MB7 LINE L1 -19 6165 3705 2979 124 14 35 chr4 108124098 108124591 -76164071 - L1PA16 LINE L1 -9 6157 5675 2329 72 0 3 chr4 108124604 108125174 -76163488 - L1PA3 LINE L1 -2 6153 5402 441 267 36 58 chr4 108125899 108126124 -76162538 + L1MC5 LINE L1 7499 7718 -243 747 202 10 185 chr4 108126662 108126949 -76161713 + LTR28 LTR ERV1 1 894 -861 822 245 24 122 chr4 108126965 108127386 -76161276 + MER52A LTR ERV1 346 1451 -23 525 289 26 0 chr4 108127407 108127563 -76161099 + MER52A LTR ERV1 1596 1755 0 196 339 104 43 chr4 108128041 108128483 -76160179 - L2 LINE L2 -964 2350 1882 181 234 106 0 chr4 108128897 108128944 -76159718 - MIR SINE MIR -100 108 57 198 209 0 0 chr4 108129029 108129072 -76159590 + CT-rich Low_complexity Low_complexity 3 45 0 1189 224 87 8 chr4 108129089 108129468 -76159194 - L1MB7 LINE L1 -14 6170 5762 188 277 40 69 chr4 108129870 108129971 -76158691 - MIR SINE MIR -62 200 103 399 21 0 0 chr4 108130074 108130122 -76158540 + (TG)n Simple_repeat Simple_repeat 2 49 0 834 203 6 0 chr4 108130133 108130291 -76158371 - MER45A DNA AcHobo -19 159 1 251 406 35 15 chr4 108130480 108130682 -76157980 - L2 LINE L2 -559 2755 2550 313 290 60 27 chr4 108130743 108130926 -76157736 - L1MEc LINE L1 -6138 258 70 321 68 0 0 chr4 108131108 108131152 -76157510 + (TC)n Simple_repeat Simple_repeat 2 45 0 264 59 0 0 chr4 108131152 108131186 -76157476 + (CA)n Simple_repeat Simple_repeat 1 34 0 210 323 16 0 chr4 108132562 108132624 -76156038 - L2 LINE L2 -8 3305 3243 289 85 0 43 chr4 108132775 108132822 -76155840 - MLT2D LTR ERVL -1 463 419 1814 218 3 5 chr4 108132884 108133264 -76155398 - MLT2D LTR ERVL -35 379 1 245 214 57 29 chr4 108133287 108133357 -76155305 - MIR SINE MIR 0 262 191 216 0 0 0 chr4 108133358 108133382 -76155280 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 3998 120 57 0 chr4 108133388 108134019 -76154643 - L1PA14 LINE L1 -1 6160 5494 555 197 251 6 chr4 108134236 108134419 -76154243 - MIR SINE MIR -33 229 2 183 278 0 74 chr4 108134760 108134814 -76153848 - L2 LINE L2 0 3272 3223 1407 155 12 35 chr4 108134842 108135159 -76153503 + AluJb SINE Alu 33 285 -27 435 189 118 8 chr4 108135212 108135339 -76153323 - LTR33A LTR ERVL -2 521 381 225 288 15 0 chr4 108135340 108135406 -76153256 - LTR50 LTR ERVL -223 572 506 1801 177 10 0 chr4 108135606 108135905 -76152757 + AluJb SINE Alu 1 302 -10 267 100 60 0 chr4 108135953 108136003 -76152659 - LTR50 LTR ERVL -742 53 1 21 0 0 0 chr4 108136057 108136078 -76152584 + AT_rich Low_complexity Low_complexity 1 21 0 244 226 0 0 chr4 108136407 108136460 -76152202 - AluSp SINE Alu -164 139 87 5658 130 62 12 chr4 108136460 108137463 -76151199 - Ricksha_a DNA DNA -128 1053 1 600 226 25 63 chr4 108138639 108138798 -76149864 - L2 LINE L2 0 3313 3161 1470 234 113 68 chr4 108139590 108140358 -76148304 + LTR1B LTR ERV1 1 994 -26 284 194 75 15 chr4 108140450 108140517 -76148145 - AluJ/FLAM SINE Alu -231 71 1 301 193 24 72 chr4 108140578 108140660 -76148002 + Tigger5 DNA MER2_type 1 78 -2245 311 214 0 14 chr4 108140660 108140730 -76147932 - Tigger5 DNA MER2_type -3 2320 2252 * 460 151 0 0 chr4 108140725 108140798 -76147864 + Tigger5 DNA MER2_type 2251 2323 0 690 215 123 28 chr4 108140838 108141089 -76147573 + ORSL DNA AcHobo 1 275 0 1330 168 4 26 chr4 108141090 108141316 -76147346 + AluJo SINE Alu 75 295 -17 1926 273 88 50 chr4 108141317 108142213 -76146449 - L2 LINE L2 -222 3091 2161 515 232 86 45 chr4 108143646 108143844 -76144818 - MIR SINE MIR -40 222 17 272 323 73 0 chr4 108143998 108144094 -76144568 + L2 LINE L2 3170 3272 0 1080 152 0 6 chr4 108144311 108144475 -76144187 - AluJo SINE Alu -14 298 136 1096 142 86 0 chr4 108145157 108145354 -76143308 + MER20 DNA MER1_type 2 215 -4 598 324 56 0 chr4 108145519 108145735 -76142927 - MIR SINE MIR -15 247 20 2081 134 3 7 chr4 108146569 108146874 -76141788 - AluSq SINE Alu -9 304 1 268 291 122 21 chr4 108147027 108147216 -76141446 + L1ME3A LINE L1 5961 6168 -2 28 29 0 0 chr4 108147260 108147295 -76141367 + AT_rich Low_complexity Low_complexity 1 35 0 447 259 103 56 chr4 108147569 108147917 -76140745 - L1MC4a LINE L1 -158 5963 5600 301 135 0 19 chr4 108148118 108148170 -76140492 - Alu SINE Alu -7 295 245 553 212 14 62 chr4 108148170 108148316 -76140346 - AluJo SINE Alu -173 139 1 223 286 77 0 chr4 108148516 108148607 -76140055 - L2 LINE L2 -1084 2230 2133 23 0 0 0 chr4 108149357 108149380 -76139282 + AT_rich Low_complexity Low_complexity 1 23 0 246 285 69 15 chr4 108149500 108149630 -76139032 - MIR SINE MIR -6 256 120 187 364 0 0 chr4 108149737 108149803 -76138859 - L3 LINE CR1 -548 1029 964 410 258 61 32 chr4 108150125 108150453 -76138209 - L1MC4a LINE L1 -743 5403 5127 408 340 64 54 chr4 108150552 108151148 -76137514 + L2 LINE L2 2592 3270 -2 481 318 10 46 chr4 108151165 108151360 -76137302 + MER5A DNA MER1_type 1 188 -1 319 289 25 8 chr4 108151453 108151574 -76137088 + L1MC4a LINE L1 5764 5886 -1922 2378 58 10 7 chr4 108151759 108152054 -76136608 - AluY SINE Alu -15 296 1 474 174 61 61 chr4 108152327 108152459 -76136203 - FLAM_A SINE Alu -1 132 1 909 177 261 7 chr4 108152466 108152749 -76135913 - L1MB5 LINE L1 -38 6136 5782 361 260 117 71 chr4 108152752 108152948 -76135714 + MIR SINE MIR 47 251 -11 9001 96 22 6 chr4 108153612 108154875 -76133787 + HSMAR1 DNA Mariner 2 1285 -2 22 0 0 0 chr4 108155007 108155029 -76133633 + AT_rich Low_complexity Low_complexity 1 22 0 186 18 36 73 chr4 108155035 108155090 -76133572 + (TTAAA)n Simple_repeat Simple_repeat 4 56 0 931 258 42 4 chr4 108155835 108156075 -76132587 - MIR SINE MIR -11 251 3 575 236 23 40 chr4 108156109 108156283 -76132379 - L2 LINE L2 -1 3312 3142 1849 176 20 6 chr4 108156283 108156624 -76132038 - MLT1A1 LTR MaLR -1 364 19 1154 265 104 8 chr4 108156638 108157147 -76131515 - L2 LINE L2 -166 3147 2577 2409 60 0 7 chr4 108157222 108157520 -76131142 + AluY SINE Alu 3 298 -13 295 311 65 1 chr4 108157520 108157636 -76131026 - MIR SINE MIR -80 128 10 2211 131 0 0 chr4 108158998 108159310 -76129352 + AluJb SINE Alu 1 312 0 205 286 36 0 chr4 108159325 108159381 -76129281 + L2 LINE L2 2373 2430 -884 * 247 254 16 0 chr4 108159367 108159430 -76129232 + L2 LINE L2 3022 3085 -228 1472 252 74 57 chr4 108159435 108159693 -76128969 - L2 LINE L2 -826 2488 2236 1916 148 3 25 chr4 108159693 108160011 -76128651 - AluSx SINE Alu -1 311 1 1472 252 74 57 chr4 108160011 108160332 -76128330 - L2 LINE L2 -1078 2236 1899 537 215 10 75 chr4 108160332 108160566 -76128096 + L1ME4a LINE L1 3757 3974 -2172 559 191 46 162 chr4 108160623 108160864 -76127798 - MER58C DNA MER1_type -1 214 2 456 306 117 4 chr4 108161124 108161372 -76127290 + MLT1L LTR MaLR 335 610 -5 33 85 0 0 chr4 108161629 108161711 -76126951 + AT_rich Low_complexity Low_complexity 1 82 0 1832 133 29 60 chr4 108161756 108162072 -76126590 - AluSx SINE Alu -6 306 1 483 319 89 44 chr4 108162214 108162710 -76125952 + L1ME4a LINE L1 4593 5110 -1036 10713 206 36 21 chr4 108162719 108165142 -76123520 + L1PA13 LINE L1 1 2499 -4298 2318 115 0 13 chr4 108165142 108165456 -76123206 - AluSg SINE Alu 0 310 1 10713 206 36 21 chr4 108165456 108166893 -76121769 + L1PA13 LINE L1 2499 3913 -2884 4543 130 20 81 chr4 108166885 108168172 -76120490 + L1PA13 LINE L1 5521 6698 -116 * 427 326 46 64 chr4 108168231 108168624 -76120038 + L1ME4a LINE L1 5528 5913 -208 25 0 0 0 chr4 108169035 108169060 -76119602 + AT_rich Low_complexity Low_complexity 1 25 0 272 254 0 0 chr4 108169079 108169138 -76119524 - L2 LINE L2 0 3313 3255 369 228 26 95 chr4 108169206 108169395 -76119267 - L1ME LINE L1 -332 5789 5614 34776 44 1 1 chr4 108169560 108174868 -76113794 - L1PA5 LINE L1 0 6154 847 645 133 0 0 chr4 108174866 108174964 -76113698 - L1PA5 LINE L1 -6048 98 1 * 255 250 37 9 chr4 108174976 108175084 -76113578 - L1ME LINE L1 -2380 5428 5318 242 267 0 0 chr4 108175521 108175581 -76113081 - MLT1K LTR MaLR 0 588 529 309 78 20 0 chr4 108175823 108175874 -76112788 - MADE1 DNA Mariner 0 80 29 356 82 82 0 chr4 108175878 108175939 -76112723 - MADE1 DNA Mariner -14 66 1 468 323 49 76 chr4 108176715 108177551 -76111111 - L2 LINE L2 -20 3252 2448 1526 148 71 7 chr4 108177551 108177848 -76110814 + MER4D LTR ERV1 1 316 -556 1549 185 0 38 chr4 108178317 108178630 -76110032 + AluJo SINE Alu 1 301 -11 1188 157 5 0 chr4 108178769 108178960 -76109702 - AluSp SINE Alu -3 310 119 397 211 63 0 chr4 108178960 108179055 -76109607 + MER67C LTR ERV1 161 261 -449 15240 60 34 14 chr4 108179058 108181786 -76106876 + L1PA6 LINE L1 3383 6139 -15 213 213 0 0 chr4 108182153 108182176 -76106486 + A-rich Low_complexity Low_complexity 2 24 -24 2093 132 6 10 chr4 108182176 108182517 -76106145 + AluSx SINE Alu 1 312 0 213 213 0 0 chr4 108182517 108182540 -76106122 + A-rich Low_complexity Low_complexity 23 48 0 1625 118 0 0 chr4 108183554 108183774 -76104888 - AluSx SINE Alu -88 224 5 355 304 47 73 chr4 108183955 108184031 -76104631 + MER5A DNA MER1_type 1 77 -112 2141 98 0 0 chr4 108184031 108184306 -76104356 + AluSg SINE Alu 14 288 -22 355 304 47 73 chr4 108184306 108184420 -76104242 + MER5A DNA MER1_type 77 186 -3 505 312 9 41 chr4 108184464 108184685 -76103977 + L1MC/D LINE L1 5540 5753 -2055 780 202 12 128 chr4 108184692 108184949 -76103713 - MIR SINE MIR -30 232 6 32342 111 13 55 chr4 108185061 108191484 -76097178 - L1PA7 LINE L1 0 6154 12 24 0 0 0 chr4 108191649 108191673 -76096989 + AT_rich Low_complexity Low_complexity 1 24 0 1893 169 27 6 chr4 108192728 108193066 -76095596 - L1PA16 LINE L1 -8 6158 5814 581 104 0 0 chr4 108193066 108193143 -76095519 - AluY SINE Alu -22 289 213 4685 153 27 13 chr4 108193243 108194318 -76094344 - L1P4 LINE L1 -682 5484 4397 27 73 0 0 chr4 108194460 108194515 -76094147 + AT_rich Low_complexity Low_complexity 1 55 0 196 207 230 11 chr4 108195172 108195259 -76093403 + MIR SINE MIR 126 231 -31 267 274 9 53 chr4 108195377 108195490 -76093172 - LTR33A LTR ERVL -4 519 412 247 315 44 128 chr4 108195841 108196269 -76092393 - L2 LINE L2 -29 3243 2852 290 278 113 60 chr4 108196483 108196634 -76092028 - MIR SINE MIR -73 189 31 1255 176 16 37 chr4 108197446 108197497 -76091165 - L1PB4 LINE L1 0 6156 6105 3703 81 11 0 chr4 108197497 108197943 -76090719 - MLT2A2 LTR ERVL 0 453 3 1255 176 16 37 chr4 108197943 108198135 -76090527 - L1PB4 LINE L1 -51 6105 5918 245 274 17 34 chr4 108198540 108198657 -76090005 - MIR SINE MIR 0 262 148 2320 92 7 0 chr4 108198664 108198968 -76089694 - AluSp SINE Alu -1 312 7 567 148 0 11 chr4 108199430 108199518 -76089144 + Tigger5 DNA MER2_type 2237 2323 0 23 33 0 0 chr4 108199518 108199548 -76089114 + AT_rich Low_complexity Low_complexity 1 30 0 383 379 34 19 chr4 108199574 108199780 -76088882 - MIR SINE MIR 0 262 54 277 368 41 18 chr4 108199869 108200040 -76088622 - MER5B DNA MER1_type -2 176 2 821 310 88 35 chr4 108201176 108201522 -76087140 + LTR33 LTR ERVL 22 401 -120 2315 132 109 47 chr4 108201522 108201696 -76086966 + MSTA LTR MaLR 1 163 -265 2256 93 0 0 chr4 108201696 108202003 -76086659 + AluSc SINE Alu 1 307 0 2315 132 109 47 chr4 108202003 108202228 -76086434 + MSTA LTR MaLR 163 428 0 821 310 88 35 chr4 108202228 108202345 -76086317 + LTR33 LTR ERVL 401 510 -11 857 164 24 108 chr4 108202698 108202771 -76085891 - MER65B LTR ERV1 -7 524 446 1893 93 0 0 chr4 108202771 108203007 -76085655 + AluSq SINE Alu 1 236 -77 857 164 24 108 chr4 108203007 108203183 -76085479 - MER65B LTR ERV1 -85 446 296 321 89 0 0 chr4 108203538 108203583 -76085079 + (CA)n Simple_repeat Simple_repeat 1 45 0 345 269 54 40 chr4 108203586 108203735 -76084927 - L1MC4 LINE L1 -130 7912 7762 1402 76 0 0 chr4 108203738 108203909 -76084753 + AluSp SINE Alu 135 305 -8 709 350 78 12 chr4 108203913 108204428 -76084234 - L1MC4 LINE L1 -277 7765 7217 899 179 20 13 chr4 108204459 108204610 -76084052 - FRAM SINE Alu -14 152 1 709 121 0 0 chr4 108204742 108204833 -76083829 + AluJ/FLAM SINE Alu 1 91 -221 281 45 0 23 chr4 108204837 108204881 -76083781 + (TC)n Simple_repeat Simple_repeat 2 44 0 188 319 0 69 chr4 108205094 108205210 -76083452 + L2 LINE L2 2982 3089 -183 1406 178 12 104 chr4 108205481 108205819 -76082843 + MER4D LTR ERV1 597 903 0 360 328 72 10 chr4 108207445 108207640 -76081022 + MIR SINE MIR 56 262 0 237 277 64 11 chr4 108207667 108207761 -76080901 - MLT1J LTR MaLR -4 507 409 2321 90 7 0 chr4 108207862 108208162 -76080500 - AluSq SINE Alu -11 302 1 180 0 0 0 chr4 108208492 108208512 -76080150 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 266 337 54 0 chr4 108209001 108209093 -76079569 + MIR3 SINE MIR 107 203 -5 193 182 91 18 chr4 108209546 108209601 -76079061 + MIR SINE MIR 126 184 -78 240 35 0 0 chr4 108210120 108210149 -76078513 + (TTC)n Simple_repeat Simple_repeat 2 30 0 2420 92 0 0 chr4 108210481 108210784 -76077878 - AluSp SINE Alu -10 303 1 273 280 26 0 chr4 108211770 108211859 -76076803 - Charlie8 DNA MER1_type -2141 276 186 639 39 0 0 chr4 108212462 108212540 -76076122 + (TTCC)n Simple_repeat Simple_repeat 3 80 0 2165 123 7 7 chr4 108212543 108212852 -76075810 - AluSc SINE Alu 0 309 1 492 18 0 0 chr4 108213397 108213454 -76075208 + (TTCC)n Simple_repeat Simple_repeat 1 57 0 897 100 0 0 chr4 108213454 108213584 -76075078 + (TTTCC)n Simple_repeat Simple_repeat 5 134 0 201 111 0 0 chr4 108213584 108213611 -76075051 + (TCCC)n Simple_repeat Simple_repeat 1 27 0 1508 181 15 4 chr4 108213611 108213882 -76074780 - AluJo SINE Alu -2 310 37 2318 97 3 0 chr4 108214121 108214429 -76074233 - AluSg SINE Alu -1 309 1 319 304 58 7 chr4 108214499 108214637 -76074025 - MIR SINE MIR -54 208 64 2793 151 23 16 chr4 108215361 108215791 -76072871 - Tigger2a DNA MER2_type 0 434 2 4022 84 57 48 chr4 108216392 108217012 -76071650 + MER4A LTR ERV1 1 625 -39 27500 26 1 0 chr4 108217013 108220858 -76067804 - L1PA2 LINE L1 0 6155 2309 13589 49 75 4 chr4 108220858 108222609 -76066053 - L1PA2 LINE L1 -4268 1878 4 437 71 0 0 chr4 108222616 108222672 -76065990 + MER4A LTR ERV1 609 664 0 227 250 36 0 chr4 108223806 108223862 -76064800 + MIR SINE MIR 200 257 -5 1386 201 147 28 chr4 108223869 108224292 -76064370 - MLT1E2 LTR MaLR -8 618 146 1429 165 49 133 chr4 108224335 108224752 -76063910 - MLT1C LTR MaLR 0 467 93 2156 136 13 0 chr4 108224752 108225060 -76063602 - AluSx SINE Alu 0 312 1 1429 165 49 133 chr4 108225060 108225114 -76063548 - MLT1C LTR MaLR -374 93 36 464 278 65 35 chr4 108225922 108226091 -76062571 + MIR SINE MIR 18 191 -71 21 0 0 0 chr4 108226183 108226204 -76062458 + AT_rich Low_complexity Low_complexity 1 21 0 272 152 0 0 chr4 108226359 108226405 -76062257 - tRNA-Gln-CAG tRNA tRNA -29 46 1 1788 186 17 0 chr4 108226469 108226770 -76061892 - AluJo SINE Alu -6 306 1 1953 67 47 8 chr4 108227172 108227426 -76061236 + AluY SINE Alu 39 302 -9 2506 84 0 0 chr4 108228801 108229112 -76059550 - AluY SINE Alu 0 311 1 431 127 0 0 chr4 108229818 108229881 -76058781 + AluS SINE Alu 2 64 -246 1614 179 0 35 chr4 108230619 108230931 -76057731 + AluJo SINE Alu 1 301 -11 871 202 21 0 chr4 108231068 108231256 -76057406 - AluSp SINE Alu 0 313 122 3541 139 19 19 chr4 108431953 108432282 -75856380 - L1PA16 LINE L1 -8 6158 5827 2482 74 0 0 chr4 108432282 108432581 -75856081 - AluY SINE Alu -12 299 1 3541 139 19 19 chr4 108432581 108432835 -75855827 - L1PA16 LINE L1 -338 5828 5575 2498 84 0 0 chr4 108433089 108433399 -75855263 - AluY SINE Alu 0 311 2 431 127 0 0 chr4 108434106 108434169 -75854493 + AluS SINE Alu 2 64 -245 1614 179 0 35 chr4 108434907 108435219 -75853443 + AluJo SINE Alu 1 301 -11 12456 28 1 0 chr4 108435333 108436813 -75851849 - L1P LINE L1 -2356 3790 2309 * 13597 49 75 4 chr4 108436812 108438564 -75850098 - L1P LINE L1 -4267 1879 4 437 71 0 0 chr4 108438571 108438627 -75850035 + MER4A LTR ERV1 609 664 0 227 250 36 0 chr4 108439761 108439817 -75848845 + MIR SINE MIR 200 257 -5 1386 201 147 28 chr4 108439824 108440247 -75848415 - MLT1E2 LTR MaLR -8 618 146 1429 165 49 133 chr4 108440290 108440707 -75847955 - MLT1C LTR MaLR 0 467 93 2156 136 13 0 chr4 108440707 108441015 -75847647 - AluSx SINE Alu 0 312 1 1429 165 49 133 chr4 108441015 108441069 -75847593 - MLT1C LTR MaLR -374 93 36 464 278 65 35 chr4 108441877 108442046 -75846616 + MIR SINE MIR 18 191 -71 21 0 0 0 chr4 108442138 108442159 -75846503 + AT_rich Low_complexity Low_complexity 1 21 0 272 152 0 0 chr4 108442314 108442360 -75846302 - tRNA-Gln-CAG tRNA tRNA -29 46 1 1788 186 17 0 chr4 108442424 108442725 -75845937 - AluJo SINE Alu -6 306 1 1941 71 47 8 chr4 108443127 108443381 -75845281 + AluY SINE Alu 39 302 -9 4362 179 28 15 chr4 108444679 108445616 -75843046 - L1P LINE L1 -801 5345 4397 27 73 0 0 chr4 108445758 108445813 -75842849 + AT_rich Low_complexity Low_complexity 1 55 0 196 207 230 11 chr4 108446470 108446557 -75842105 + MIR SINE MIR 126 231 -31 267 274 9 53 chr4 108446675 108446788 -75841874 - LTR33A LTR ERVL -4 519 412 247 315 44 128 chr4 108447139 108447567 -75841095 - L2 LINE L2 -29 3243 2852 290 278 113 60 chr4 108447781 108447932 -75840730 - MIR SINE MIR -73 189 31 1255 176 16 37 chr4 108448744 108448795 -75839867 - L1PB4 LINE L1 0 6156 6105 3703 81 11 0 chr4 108448795 108449241 -75839421 - MLT2A2 LTR ERVL 0 453 3 1255 176 16 37 chr4 108449241 108449433 -75839229 - L1PB4 LINE L1 -51 6105 5918 600 249 11 116 chr4 108449838 108449962 -75838700 - MIR SINE MIR 0 262 181 2346 93 7 0 chr4 108449962 108450272 -75838390 - AluSp SINE Alu -1 312 1 600 249 11 116 chr4 108450272 108450424 -75838238 - MIR SINE MIR -81 181 15 2126 137 0 0 chr4 108450517 108450824 -75837838 + AluSx SINE Alu 1 307 -5 567 148 0 11 chr4 108451157 108451245 -75837417 + Tigger5 DNA MER2_type 2237 2323 0 23 33 0 0 chr4 108451245 108451275 -75837387 + AT_rich Low_complexity Low_complexity 1 30 0 383 379 34 19 chr4 108451301 108451507 -75837155 - MIR SINE MIR 0 262 54 277 368 41 18 chr4 108451596 108451767 -75836895 - MER5B DNA MER1_type -2 176 2 821 310 88 35 chr4 108452903 108453249 -75835413 + LTR33 LTR ERVL 22 401 -120 2315 132 109 47 chr4 108453249 108453423 -75835239 + MSTA LTR MaLR 1 163 -265 2256 93 0 0 chr4 108453423 108453730 -75834932 + AluSc SINE Alu 1 307 0 2315 132 109 47 chr4 108453730 108453955 -75834707 + MSTA LTR MaLR 163 428 0 821 310 88 35 chr4 108453955 108454072 -75834590 + LTR33 LTR ERVL 401 510 -11 857 164 24 108 chr4 108454425 108454498 -75834164 - MER65B LTR ERV1 -7 524 446 1893 93 0 0 chr4 108454498 108454734 -75833928 + AluSq SINE Alu 1 236 -77 857 164 24 108 chr4 108454734 108454910 -75833752 - MER65B LTR ERV1 -85 446 296 321 89 0 0 chr4 108455265 108455310 -75833352 + (CA)n Simple_repeat Simple_repeat 1 45 0 345 269 54 40 chr4 108455313 108455462 -75833200 - L1MC4 LINE L1 -130 7912 7762 1402 76 0 0 chr4 108455465 108455636 -75833026 + AluSp SINE Alu 135 305 -8 709 350 78 12 chr4 108455640 108456155 -75832507 - L1MC4 LINE L1 -277 7765 7217 764 93 10 0 chr4 108456186 108456283 -75832379 - FRAM SINE Alu -24 152 55 14564 24 0 0 chr4 108456399 108458767 -75829895 + L1PA2 LINE L1 3788 6155 0 4022 84 57 48 chr4 108458768 108459388 -75829274 - MER4A LTR ERV1 -39 625 1 2793 151 23 16 chr4 108459989 108460419 -75828243 + Tigger2a DNA MER2_type 2 434 0 319 304 58 7 chr4 108461143 108461281 -75827381 + MIR SINE MIR 64 208 -54 2318 97 3 0 chr4 108461351 108461659 -75827003 + AluSg SINE Alu 1 309 -1 1508 181 15 4 chr4 108461898 108462169 -75826493 + AluJo SINE Alu 37 310 -2 201 111 0 0 chr4 108462169 108462196 -75826466 + (GGGA)n Simple_repeat Simple_repeat 1 27 0 897 100 0 0 chr4 108462196 108462326 -75826336 + (GGAAA)n Simple_repeat Simple_repeat 5 134 0 492 18 0 0 chr4 108462326 108462383 -75826279 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 2165 123 7 7 chr4 108462928 108463237 -75825425 + AluSc SINE Alu 1 309 0 639 39 0 0 chr4 108463240 108463318 -75825344 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 273 280 26 0 chr4 108463921 108464010 -75824652 + Charlie8 DNA MER1_type 186 287 -2130 2420 92 0 0 chr4 108464998 108465301 -75823361 + AluSp SINE Alu 1 303 -10 240 35 0 0 chr4 108465633 108465662 -75823000 + (GAA)n Simple_repeat Simple_repeat 2 30 0 193 182 91 18 chr4 108466181 108466236 -75822426 - MIR SINE MIR -78 184 126 266 337 54 0 chr4 108466689 108466781 -75821881 - MIR3 SINE MIR -5 203 107 180 0 0 0 chr4 108467270 108467290 -75821372 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2321 90 7 0 chr4 108467620 108467920 -75820742 + AluSq SINE Alu 1 302 -11 237 277 64 11 chr4 108468021 108468115 -75820547 + MLT1J LTR MaLR 409 507 -4 360 328 72 10 chr4 108468142 108468337 -75820325 - MIR SINE MIR 0 262 56 1874 181 5 100 chr4 108469963 108470404 -75818258 - MER4D LTR ERV1 0 903 505 1647 62 9 9 chr4 108470506 108470717 -75817945 - L1PA3 LINE L1 -7 6148 5938 2340 187 41 67 chr4 108470810 108471313 -75817349 + MLT1F LTR MaLR 8 498 -44 1171 172 0 0 chr4 108471313 108471487 -75817175 - FAM SINE Alu -1 174 1 2340 187 41 67 chr4 108471487 108471518 -75817144 + MLT1F LTR MaLR 498 528 -14 424 335 125 39 chr4 108471518 108472055 -75816607 + L3 LINE CR1 933 1515 -62 405 58 0 0 chr4 108472601 108472653 -75816009 + (TTC)n Simple_repeat Simple_repeat 3 54 0 228 310 0 17 chr4 108473724 108473782 -75814880 + L2 LINE L2 3213 3269 -3 21 57 0 0 chr4 108474043 108474078 -75814584 + AT_rich Low_complexity Low_complexity 1 35 0 2107 124 7 16 chr4 108474365 108474502 -75814160 + AluSx SINE Alu 1 138 -174 5128 46 0 2 chr4 108474502 108475074 -75813588 + L1PA5 LINE L1 5568 6140 -14 291 85 0 0 chr4 108475074 108475121 -75813541 + (TA)n Simple_repeat Simple_repeat 2 48 0 5128 46 0 2 chr4 108475121 108475133 -75813529 + L1PA5 LINE L1 6140 6151 -3 2107 124 7 16 chr4 108475133 108475301 -75813361 + AluSx SINE Alu 138 303 -9 239 93 23 0 chr4 108475601 108475644 -75813018 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 2311 91 14 0 chr4 108475938 108476234 -75812428 - AluSp SINE Alu -11 302 3 672 259 47 31 chr4 108476321 108476514 -75812148 - MIR SINE MIR -14 248 53 252 283 43 0 chr4 108476875 108476967 -75811695 + L1MC4 LINE L1 6611 6706 -1336 229 151 57 38 chr4 108477072 108477125 -75811537 + L2 LINE L2 3008 3061 -252 617 227 88 51 chr4 108477191 108477464 -75811198 - L1MC4 LINE L1 -461 7581 7299 1216 193 78 12 chr4 108477512 108477756 -75810906 + MLT1F1 LTR MaLR 308 567 0 322 265 79 63 chr4 108478442 108478631 -75810031 + MLT1K LTR MaLR 391 582 -6 185 265 0 20 chr4 108478870 108478919 -75809743 - L2 LINE L2 -16 3297 3250 193 208 104 0 chr4 108479925 108479973 -75808689 - L2 LINE L2 -9 3304 3252 1569 171 73 0 chr4 108480016 108480291 -75808371 + AluJb SINE Alu 1 295 -17 738 253 42 16 chr4 108480310 108480500 -75808162 - MIR SINE MIR -67 195 1 2200 124 6 0 chr4 108480929 108481243 -75807419 + L1PB1 LINE L1 5835 6150 -1 24 32 0 0 chr4 108481243 108481274 -75807388 + AT_rich Low_complexity Low_complexity 1 31 0 1011 286 129 75 chr4 108481274 108481629 -75807033 - L2 LINE L2 -1216 2098 1763 983 96 0 7 chr4 108481629 108481764 -75806898 + L1MA1 LINE L1 6169 6302 0 1011 286 129 75 chr4 108481764 108482177 -75806485 - L2 LINE L2 -1551 1763 1289 1141 285 89 12 chr4 108483419 108483822 -75804840 - L2 LINE L2 -2066 1248 815 30 0 0 0 chr4 108483938 108483968 -75804694 + AT_rich Low_complexity Low_complexity 1 30 0 484 319 52 9 chr4 108485934 108486147 -75802515 - MIR SINE MIR -39 223 2 342 161 0 0 chr4 108486261 108486342 -75802320 - MER63 DNA MER1_type -84 977 897 1774 239 112 6 chr4 108486467 108486966 -75801696 - MLT1H1 LTR MaLR -2 553 2 326 218 169 0 chr4 108487009 108487151 -75801511 + L1MC5 LINE L1 7690 7855 -106 29 28 0 0 chr4 108487189 108487225 -75801437 + AT_rich Low_complexity Low_complexity 1 36 0 4761 91 54 0 chr4 108487241 108487357 -75801305 - L1PA16 LINE L1 0 6166 6058 1668 204 0 20 chr4 108487357 108487661 -75801001 - AluJb SINE Alu -14 298 1 4761 91 54 0 chr4 108487661 108488532 -75800130 - L1PA16 LINE L1 -108 6058 5132 3865 163 75 63 chr4 108488660 108488996 -75799666 + L1MC3 LINE L1 6757 7088 -697 267 232 0 0 chr4 108488996 108489052 -75799610 + MLT1F1 LTR MaLR 35 90 -477 3865 163 75 63 chr4 108489052 108489280 -75799382 + L1MC3 LINE L1 7088 7312 -473 1506 160 125 49 chr4 108489280 108489648 -75799014 - MSTD LTR MaLR 0 396 1 3865 163 75 63 chr4 108489648 108489834 -75798828 + L1MC3 LINE L1 7312 7494 -291 1804 202 40 3 chr4 108489834 108490186 -75798476 - MLT1A1 LTR MaLR 0 365 1 3865 163 75 63 chr4 108490186 108490393 -75798269 + L1MC3 LINE L1 7494 7783 -2 2065 149 118 0 chr4 108492906 108493289 -75795373 - MSTA LTR MaLR 0 428 1 1055 72 7 26 chr4 108493659 108493811 -75794851 + L1PA8 LINE L1 6022 6170 -2 938 201 198 51 chr4 108495752 108496125 -75792537 - MSTC LTR MaLR 0 428 1 387 191 21 0 chr4 108496408 108496502 -75792160 + L1MB3 LINE L1 6088 6183 0 344 273 136 13 chr4 108496524 108496678 -75791984 - MIR SINE MIR 0 262 90 1856 177 24 32 chr4 108496904 108497282 -75791380 - THE1C LTR MaLR 0 375 1 805 247 143 66 chr4 108497489 108497722 -75790940 - L2 LINE L2 0 3313 3099 1181 167 18 31 chr4 108497722 108497944 -75790718 - MER20 DNA MER1_type 0 219 1 805 247 143 66 chr4 108497944 108498217 -75790445 - L2 LINE L2 -214 3099 2773 648 247 43 51 chr4 108498378 108498613 -75790049 - L2 LINE L2 -1 3312 3080 300 167 36 36 chr4 108499435 108499519 -75789143 + L1M3 LINE L1 5598 5681 -490 25 0 0 0 chr4 108499519 108499544 -75789118 + AT_rich Low_complexity Low_complexity 1 25 0 321 355 123 14 chr4 108501318 108501456 -75787206 + MIR3 SINE MIR 49 201 -7 708 290 156 0 chr4 108502602 108502967 -75785695 - LTR33A LTR ERVL -40 483 62 190 309 81 22 chr4 108503055 108503191 -75785471 - L2 LINE L2 0 3313 3170 449 160 13 0 chr4 108504826 108504901 -75783761 + FLAM_A SINE Alu 53 128 -14 299 307 174 30 chr4 108505923 108506353 -75782309 + L2 LINE L2 2355 2846 -468 199 172 17 17 chr4 108506705 108506763 -75781899 + GA-rich Low_complexity Low_complexity 3 60 0 304 284 63 0 chr4 108508109 108508204 -75780458 - L2 LINE L2 0 3313 3213 1601 184 46 12 chr4 108509296 108509622 -75779040 - MLT1A1 LTR MaLR 0 365 29 558 287 61 15 chr4 108509884 108510283 -75778379 - MLT1J LTR MaLR -18 493 1 537 222 65 116 chr4 108511628 108511903 -75776759 + MLT1J LTR MaLR 44 304 -207 426 298 66 48 chr4 108512045 108512397 -75776265 - MLT1J LTR MaLR -116 330 8 229 244 87 43 chr4 108512421 108512536 -75776126 + MLT1J LTR MaLR 350 469 -42 7316 120 34 8 chr4 108512811 108514010 -75774652 - Tigger3b DNA MER2_type 0 1231 1 423 310 32 26 chr4 108514537 108514692 -75773970 + MIR3 SINE MIR 34 189 -19 762 250 91 4 chr4 108514891 108515123 -75773539 - MIR SINE MIR -2 260 9 613 250 89 0 chr4 108515310 108515478 -75773184 - MIR SINE MIR -48 214 32 437 307 0 22 chr4 108515513 108515650 -75773012 - MIR SINE MIR -6 256 123 452 249 170 9 chr4 108515741 108515904 -75772758 + MIR SINE MIR 65 252 -10 367 281 109 31 chr4 108515921 108516049 -75772613 + MIR SINE MIR 56 193 -69 720 278 94 8 chr4 108516624 108516858 -75771804 + MIR SINE MIR 9 262 0 244 337 42 0 chr4 108519114 108519209 -75769453 - L2 LINE L2 -5 3308 3210 332 295 54 27 chr4 108519214 108519326 -75769336 - MIR SINE MIR -70 192 78 625 266 0 11 chr4 108519869 108520046 -75768616 + MER5B DNA MER1_type 4 178 0 1109 169 5 5 chr4 108520051 108520240 -75768422 + MER5A DNA MER1_type 1 189 0 2077 130 0 0 chr4 108520802 108521136 -75767526 - AluSx SINE Alu 0 334 1 207 0 0 0 chr4 108523123 108523146 -75765516 + (A)n Simple_repeat Simple_repeat 1 23 0 294 256 90 15 chr4 108525325 108525458 -75763204 - MLT1H LTR MaLR -375 174 32 228 279 62 70 chr4 108525525 108525654 -75763008 - MIR SINE MIR -56 152 25 3084 76 9 5 chr4 108526143 108526661 -75762001 + L1P3 LINE L1 4915 5432 -722 433 165 93 10 chr4 108527480 108527577 -75761085 - MLT1C LTR MaLR 0 467 363 194 350 43 8 chr4 108527594 108527711 -75760951 - L2 LINE L2 -321 2951 2831 404 159 159 45 chr4 108527714 108527890 -75760772 - MLT1C LTR MaLR -143 324 129 228 35 0 0 chr4 108527933 108527962 -75760700 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 553 188 143 0 chr4 108529156 108529268 -75759394 + FLAM_A SINE Alu 1 128 -5 677 159 28 91 chr4 108530510 108530629 -75758033 - MIR SINE MIR 0 262 156 1548 87 32 0 chr4 108530629 108530848 -75757814 - L1PA10 LINE L1 -3 6165 5940 677 159 28 91 chr4 108530848 108530904 -75757758 - MIR SINE MIR -106 156 98 536 216 144 0 chr4 108531735 108531874 -75756788 - MLT1D LTR MaLR 0 505 347 1827 119 3 48 chr4 108531887 108532198 -75756464 + MER1B DNA MER1_type 1 297 -42 390 253 24 0 chr4 108532193 108532320 -75756342 - MLT1C LTR MaLR -359 108 6 * 611 294 21 27 chr4 108532432 108532619 -75756043 + MIR3 SINE MIR 17 202 -6 298 314 103 39 chr4 108533000 108533204 -75755458 + MIR SINE MIR 14 230 -32 430 245 0 91 chr4 108533974 108534117 -75754545 + MIR SINE MIR 28 157 -105 2068 127 0 13 chr4 108534590 108534905 -75753757 + AluSq SINE Alu 1 311 -2 2389 57 0 0 chr4 108536115 108536411 -75752251 + AluY SINE Alu 1 296 -15 22 0 0 0 chr4 108536481 108536503 -75752159 + AT_rich Low_complexity Low_complexity 1 22 0 1254 138 165 31 chr4 108536776 108537060 -75751602 - AluSx SINE Alu 0 312 2 21 0 0 0 chr4 108539119 108539140 -75749522 + AT_rich Low_complexity Low_complexity 1 21 0 2309 121 9 0 chr4 108539348 108539695 -75748967 - L1PA13 LINE L1 0 6163 5814 360 102 0 0 chr4 108540417 108540476 -75748186 - L1MA8 LINE L1 -3 6288 6230 199 311 14 0 chr4 108541217 108541291 -75747371 + MIR SINE MIR 80 154 -108 344 292 26 18 chr4 108542751 108542864 -75745798 + MIR SINE MIR 8 121 -141 541 274 69 22 chr4 108542875 108543064 -75745598 + MIR SINE MIR 64 260 -2 274 226 24 12 chr4 108550278 108550362 -75738300 + GA-rich Low_complexity Low_complexity 2 86 0 25 0 0 0 chr4 108552655 108552680 -75735982 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr4 108557919 108557940 -75730722 + GC_rich Low_complexity Low_complexity 1 21 0 181 275 0 0 chr4 108557942 108557982 -75730680 - L2 LINE L2 -2 3311 3272 225 296 20 20 chr4 108559523 108559621 -75729041 + GA-rich Low_complexity Low_complexity 1 98 0 180 77 0 0 chr4 108561327 108561353 -75727309 + (TG)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr4 108569788 108569811 -75718851 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr4 108572454 108572478 -75716184 + AT_rich Low_complexity Low_complexity 1 24 0 450 0 0 0 chr4 108574162 108574212 -75714450 + (GTTTG)n Simple_repeat Simple_repeat 2 51 0 302 65 0 22 chr4 108577234 108577280 -75711382 + (TA)n Simple_repeat Simple_repeat 1 45 0 26 0 0 0 chr4 108578513 108578539 -75710123 + AT_rich Low_complexity Low_complexity 1 26 0 27 0 0 0 chr4 108578639 108578666 -75709996 + AT_rich Low_complexity Low_complexity 1 27 0 2170 109 3 0 chr4 108578672 108578974 -75709688 - AluSx SINE Alu -9 303 1 1660 216 77 29 chr4 108579006 108579488 -75709174 - MLT1D LTR MaLR 0 505 1 2552 281 59 69 chr4 108579965 108581302 -75707360 + L1MCc LINE L1 17 1340 -5083 11075 173 24 19 chr4 108581316 108584470 -75704192 + L1MA7 LINE L1 3110 6280 -11 528 271 68 12 chr4 108584503 108584851 -75703811 + L1MCc LINE L1 1328 1698 -4887 1997 132 7 0 chr4 108584980 108585276 -75703386 + AluSx SINE Alu 1 298 -14 366 210 28 6 chr4 108585294 108585470 -75703192 + (TA)n Simple_repeat Simple_repeat 1 180 0 2011 248 112 21 chr4 108585500 108587370 -75701292 + L1MCc LINE L1 2004 4055 -2886 22 0 0 0 chr4 108587392 108587414 -75701248 + AT_rich Low_complexity Low_complexity 1 22 0 1574 115 94 30 chr4 108587414 108587744 -75700918 + L1MA8 LINE L1 5938 6288 -3 39201 36 22 34 chr4 108588030 108594312 -75694350 + L1PA2 LINE L1 4 6155 0 291 264 32 151 chr4 108594306 108594617 -75694045 - MLT1F-int LTR MaLR -75 1296 1023 * 322 370 6 6 chr4 108594819 108594984 -75693678 - MLT1F-int LTR MaLR -509 862 698 585 302 21 21 chr4 108595176 108595467 -75693195 - MLT1F-int LTR MaLR -770 601 311 248 292 23 23 chr4 108595502 108595632 -75693030 - MLT1F-int LTR MaLR -1228 143 14 2158 222 47 28 chr4 108595635 108596167 -75692495 - MLT1F LTR MaLR 0 542 1 289 249 141 52 chr4 108596202 108596415 -75692247 - L3 LINE CR1 -705 872 641 2236 117 48 31 chr4 108596937 108597295 -75691367 - THE1B LTR MaLR 0 364 1 2096 146 7 0 chr4 108598192 108598500 -75690162 - AluJb SINE Alu -2 310 1 2385 82 3 0 chr4 108598573 108598879 -75689783 + AluY SINE Alu 1 307 -4 978 56 0 0 chr4 108598984 108599109 -75689553 + (TTC)n Simple_repeat Simple_repeat 2 126 0 1658 175 19 0 chr4 108599109 108599377 -75689285 - AluJo SINE Alu -38 274 2 1663 140 16 84 chr4 108599381 108599549 -75689113 - AluJb SINE Alu -13 299 162 2425 65 0 0 chr4 108599549 108599840 -75688822 - AluY SINE Alu -19 292 2 1663 140 16 84 chr4 108599840 108599992 -75688670 - AluJb SINE Alu -150 162 1 1914 143 143 11 chr4 108600200 108600578 -75688084 - MSTA LTR MaLR 0 428 1 22 35 0 0 chr4 108601579 108601608 -75687054 + AT_rich Low_complexity Low_complexity 1 29 0 233 333 26 0 chr4 108602730 108602808 -75685854 + L2 LINE L2 3230 3309 -4 181 236 109 0 chr4 108604594 108604649 -75684013 - MIR SINE MIR -46 216 156 23 0 0 0 chr4 108604651 108604674 -75683988 + AT_rich Low_complexity Low_complexity 1 23 0 313 211 96 102 chr4 108605282 108605448 -75683214 - L1M2 LINE L1 -5885 964 800 2253 68 14 0 chr4 108605535 108605831 -75682831 + AluY SINE Alu 1 300 -11 21 36 0 0 chr4 108606134 108606162 -75682500 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 108606512 108606540 -75682122 + AT_rich Low_complexity Low_complexity 1 28 0 303 140 0 0 chr4 108606851 108606901 -75681761 + (TTCC)n Simple_repeat Simple_repeat 2 51 0 1633 92 0 35 chr4 108607073 108607300 -75681362 + AluSq SINE Alu 86 304 -9 2304 110 0 0 chr4 108607417 108607725 -75680937 + AluY SINE Alu 1 308 -3 9526 155 44 79 chr4 108607776 108608198 -75680464 - L1MC3 LINE L1 -154 7631 7196 694 198 0 0 chr4 108608198 108608324 -75680338 - FLAM_C SINE Alu -17 126 1 9526 155 44 79 chr4 108608324 108608396 -75680266 - L1MC3 LINE L1 -589 7196 7123 261 0 0 0 chr4 108608396 108608425 -75680237 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 2469 34 10 0 chr4 108608430 108608725 -75679937 - AluY SINE Alu -13 298 1 9526 155 44 79 chr4 108608725 108610307 -75678355 - L1MC3 LINE L1 -666 7119 5512 2324 105 0 0 chr4 108610307 108610602 -75678060 + AluSg SINE Alu 1 295 -15 9526 155 44 79 chr4 108610602 108610779 -75677883 - L1MC3 LINE L1 -2273 5512 5330 1551 133 13 87 chr4 108610834 108611134 -75677528 - AluJb SINE Alu -6 306 29 581 314 50 43 chr4 108611134 108611433 -75677229 - MLT1I LTR MaLR -72 337 37 1928 101 4 4 chr4 108611576 108611844 -75676818 + AluSg SINE Alu 29 296 -14 2269 87 6 22 chr4 108611888 108612199 -75676463 + AluY SINE Alu 1 306 -5 2399 226 88 5 chr4 108612200 108612616 -75676046 - L1M4 LINE L1 -866 5280 4900 212 0 36 0 chr4 108612616 108612644 -75676018 + (TG)n Simple_repeat Simple_repeat 2 30 0 2399 226 88 5 chr4 108612644 108612987 -75675675 - L1M4 LINE L1 -1246 4900 4458 208 355 47 9 chr4 108612990 108613097 -75675565 - L2 LINE L2 -21 3292 3182 567 205 212 39 chr4 108613803 108614062 -75674600 + L2 LINE L2 3010 3313 0 6283 82 16 1 chr4 108614205 108615410 -75673252 + L1PA14 LINE L1 4931 6148 -13 1817 176 149 10 chr4 108615577 108615985 -75672677 + MLT1C LTR MaLR 1 465 -2 1913 180 0 0 chr4 108616012 108616312 -75672350 - AluJo SINE Alu -12 300 1 23 0 0 0 chr4 108616597 108616620 -75672042 + AT_rich Low_complexity Low_complexity 1 23 0 1738 176 0 23 chr4 108616623 108616925 -75671737 - AluJo SINE Alu -10 302 8 6292 99 43 14 chr4 108618695 108619784 -75668878 - L1MA4A LINE L1 -5 6298 5180 * 11823 187 64 3 chr4 108619777 108622110 -75666552 - L1M2 LINE L1 -4330 2519 43 309 283 131 0 chr4 108622949 108623048 -75665614 - L2 LINE L2 -1377 1937 1826 2331 80 0 0 chr4 108623083 108623369 -75665293 - AluSg SINE Alu -24 286 1 428 258 168 24 chr4 108623819 108623986 -75664676 - MLT1K LTR MaLR -128 460 270 2615 172 45 28 chr4 108624396 108624973 -75663689 - L1MB7 LINE L1 -13 6171 5585 1781 195 61 42 chr4 108626137 108626614 -75662048 + MLT2B1 LTR ERVL 1 486 -34 313 118 0 0 chr4 108626655 108626706 -75661956 + MLT2B1 LTR ERVL 464 514 -6 669 211 103 75 chr4 108626866 108627033 -75661629 + MER20 DNA MER1_type 1 177 -42 2469 50 0 7 chr4 108627033 108627330 -75661332 + AluY SINE Alu 1 295 -16 669 211 103 75 chr4 108627330 108627375 -75661287 + MER20 DNA MER1_type 177 219 0 1560 168 39 0 chr4 108627402 108627658 -75661004 + AluJo SINE Alu 33 298 -14 1414 160 38 17 chr4 108627698 108627991 -75660671 - MER58B DNA MER1_type 0 341 43 1155 301 12 9 chr4 108628089 108628421 -75660241 - MLT1I LTR MaLR -14 395 63 586 271 145 5 chr4 108628586 108628800 -75659862 - MIR SINE MIR 0 262 19 544 276 21 7 chr4 108628834 108628979 -75659683 + MIR SINE MIR 41 187 -75 26 30 0 0 chr4 108629456 108629489 -75659173 + AT_rich Low_complexity Low_complexity 1 33 0 31 0 0 0 chr4 108630025 108630056 -75658606 + AT_rich Low_complexity Low_complexity 1 31 0 4384 43 2 0 chr4 108632806 108633336 -75655326 + L1PA8 LINE L1 5629 6159 -13 281 288 7 65 chr4 108633708 108633847 -75654815 + MLT1J1 LTR MaLR 9 139 -307 1783 149 0 24 chr4 108634530 108634825 -75653837 + AluJb SINE Alu 1 288 -24 216 0 0 0 chr4 108634830 108634854 -75653808 + (TA)n Simple_repeat Simple_repeat 1 24 0 384 330 73 21 chr4 108634880 108634964 -75653698 + L1ME4a LINE L1 5089 5167 -979 485 234 55 16 chr4 108634964 108635092 -75653570 + FLAM_A SINE Alu 1 133 0 384 330 73 21 chr4 108635092 108635240 -75653422 + L1ME4a LINE L1 5167 5333 -813 666 290 229 27 chr4 108635467 108636105 -75652557 + L2 LINE L2 310 1076 -2238 424 276 40 46 chr4 108636138 108636290 -75652372 + L2 LINE L2 3158 3308 -5 902 287 71 48 chr4 108636290 108636897 -75651765 + L1ME4a LINE L1 5412 6060 -61 33 73 0 0 chr4 108637243 108637311 -75651351 + AT_rich Low_complexity Low_complexity 1 68 0 186 103 0 0 chr4 108638567 108638596 -75650066 + (CA)n Simple_repeat Simple_repeat 1 29 0 246 261 46 15 chr4 108639319 108639384 -75649278 - L2 LINE L2 -9 3304 3238 22 35 0 0 chr4 108640038 108640067 -75648595 + AT_rich Low_complexity Low_complexity 1 29 0 29 60 0 0 chr4 108640098 108640148 -75648514 + AT_rich Low_complexity Low_complexity 1 50 0 6910 58 11 2 chr4 108641403 108642325 -75646337 + L1PA7 LINE L1 5225 6154 0 792 202 12 128 chr4 108642437 108642694 -75645968 + MIR SINE MIR 6 232 -30 478 265 30 57 chr4 108642701 108642932 -75645730 - L1MC/D LINE L1 -370 5751 5531 378 304 47 73 chr4 108642966 108643080 -75645582 - MER5A DNA MER1_type -3 186 77 2109 102 0 0 chr4 108643080 108643355 -75645307 - AluSg SINE Alu -22 288 14 378 304 47 73 chr4 108643355 108643431 -75645231 - MER5A DNA MER1_type -112 77 1 1623 118 0 0 chr4 108643612 108643832 -75644830 + AluSx SINE Alu 5 224 -88 2062 132 6 10 chr4 108644846 108644896 -75643766 - AluSx SINE Alu 0 333 284 180 97 0 0 chr4 108644896 108644927 -75643735 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2062 132 6 10 chr4 108644927 108645210 -75643452 - AluSx SINE Alu -49 284 1 15275 60 7 1 chr4 108645600 108648328 -75640334 - L1PA6 LINE L1 -15 6139 3383 428 211 63 0 chr4 108648331 108648426 -75640236 - MER67C LTR ERV1 -449 261 161 1149 141 21 0 chr4 108648426 108648617 -75640045 + AluSp SINE Alu 119 313 0 1172 236 0 38 chr4 108648773 108649066 -75639596 - AluJo SINE Alu -30 282 1 683 305 57 64 chr4 108649210 108649475 -75639187 - ERVL LTR ERVL -2769 2995 2733 952 103 0 22 chr4 108649475 108649611 -75639051 - FLAM_C SINE Alu 0 133 1 683 305 57 64 chr4 108649611 108649752 -75638910 - ERVL LTR ERVL -3031 2733 2592 261 386 51 38 chr4 108649752 108649910 -75638752 + L2 LINE L2 3112 3271 -1 575 230 75 6 chr4 108650403 108650577 -75638085 + MLT1L LTR MaLR 413 598 -17 404 269 96 42 chr4 108651601 108651768 -75636894 - MIR SINE MIR -50 212 37 225 0 0 0 chr4 108652418 108652443 -75636219 + (A)n Simple_repeat Simple_repeat 1 25 0 484 268 55 0 chr4 108653045 108653172 -75635490 + LTR16A1 LTR ERVL 323 456 -1 284 194 14 69 chr4 108656003 108656075 -75632587 + L2 LINE L2 3246 3313 0 526 276 77 56 chr4 108656257 108656453 -75632209 - MIR SINE MIR -13 249 50 252 416 40 7 chr4 108656632 108656781 -75631881 - L2 LINE L2 -93 3179 3026 220 207 207 0 chr4 108656848 108656906 -75631756 + L2 LINE L2 3200 3269 -3 466 359 147 17 chr4 108658845 108659321 -75629341 - L2 LINE L2 -466 2848 2311 740 238 49 11 chr4 108659569 108659754 -75628908 + MIR SINE MIR 20 211 -51 268 244 23 70 chr4 108659939 108660025 -75628637 - MIR SINE MIR -102 160 79 357 285 137 11 chr4 108660157 108660434 -75628228 - L1ME4a LINE L1 0 6121 5810 27 0 0 0 chr4 108660692 108660719 -75627943 + AT_rich Low_complexity Low_complexity 1 27 0 736 129 22 65 chr4 108660893 108661032 -75627630 + FLAM_C SINE Alu 1 133 -10 15022 122 25 22 chr4 108661327 108663737 -75624925 + Tigger1 DNA MER2_type 1 2418 0 1062 265 146 32 chr4 108663976 108664380 -75624282 + MLT1J2 LTR MaLR 1 450 0 1263 76 0 0 chr4 108664446 108664603 -75624059 - AluSp/q SINE Alu -1 312 156 706 127 56 8 chr4 108664606 108664732 -75623930 - Tigger1 DNA MER2_type -154 2264 2133 1082 70 7 14 chr4 108664735 108664877 -75623785 - AluSp SINE Alu -172 141 1 2192 117 0 3 chr4 108665773 108666081 -75622581 + AluSq SINE Alu 1 307 -6 205 231 0 0 chr4 108666693 108666732 -75621930 - L2 LINE L2 0 3272 3234 2386 168 68 8 chr4 108667980 108668462 -75620200 + L1MB8 LINE L1 5662 6172 -6 22 0 0 0 chr4 108668523 108668545 -75620117 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr4 108669000 108669022 -75619640 + (GGAA)n Simple_repeat Simple_repeat 3 24 0 25 75 0 0 chr4 108669385 108669438 -75619224 + AT_rich Low_complexity Low_complexity 1 53 0 789 291 89 51 chr4 108670438 108670483 -75618179 + LTR16C LTR ERVL 1 43 -448 2343 98 0 7 chr4 108670483 108670790 -75617872 - AluSq SINE Alu -8 305 1 789 291 89 51 chr4 108670790 108671215 -75617447 + LTR16C LTR ERVL 43 489 -2 408 275 92 80 chr4 108673723 108674050 -75614612 + L2 LINE L2 2544 2874 -440 426 232 37 21 chr4 108674061 108674227 -75614435 + MIR SINE MIR 34 253 -9 2259 111 0 0 chr4 108674291 108674589 -75614073 - AluSx SINE Alu -14 298 1 1609 170 43 18 chr4 108675540 108675817 -75612845 + AluJo SINE Alu 9 292 -20 21 36 0 0 chr4 108676013 108676041 -75612621 + AT_rich Low_complexity Low_complexity 1 28 0 37 0 0 0 chr4 108676484 108676521 -75612141 + AT_rich Low_complexity Low_complexity 1 37 0 411 207 139 74 chr4 108676628 108676810 -75611852 + MER63 DNA MER1_type 1 781 -55 231 200 38 67 chr4 108676810 108676915 -75611747 - HAL1b LINE L1 -499 849 748 837 163 52 17 chr4 108677166 108677338 -75611324 - THE1C LTR MaLR -55 320 143 612 235 139 106 chr4 108677517 108678103 -75610559 - HAL1 LINE L1 -668 1839 1274 1868 167 0 3 chr4 108678103 108678397 -75610265 + AluSc SINE Alu 1 293 -16 612 235 139 106 chr4 108678397 108678408 -75610254 - HAL1 LINE L1 -1233 1274 1265 2188 130 3 0 chr4 108678408 108678715 -75609947 + AluSx SINE Alu 3 310 -2 612 235 139 106 chr4 108678715 108678945 -75609717 - HAL1 LINE L1 -1242 1265 984 961 200 0 56 chr4 108679177 108679414 -75609248 - AluJo SINE Alu 0 310 86 360 330 60 28 chr4 108679879 108680061 -75608601 - HAL1 LINE L1 -2319 188 1 1028 212 104 21 chr4 108680655 108680896 -75607766 - MER58 DNA MER1_type -2159 261 1 234 91 0 0 chr4 108680933 108680966 -75607696 + (TGG)n Simple_repeat Simple_repeat 1 33 0 24 0 0 0 chr4 108681621 108681645 -75607017 + AT_rich Low_complexity Low_complexity 1 24 0 321 231 8 142 chr4 108681757 108681891 -75606771 - MIR3 SINE MIR -6 202 87 227 212 98 114 chr4 108683229 108683344 -75605318 - L2 LINE L2 0 3272 3157 2059 104 14 0 chr4 108683344 108683646 -75605016 + AluSx SINE Alu 1 306 0 227 212 98 114 chr4 108683646 108683661 -75605001 - L2 LINE L2 -115 3157 3143 1462 206 80 9 chr4 108684510 108684671 -75603991 + MLT1A2 LTR MaLR 1 149 -225 231 36 0 0 chr4 108684671 108684699 -75603963 + (TC)n Simple_repeat Simple_repeat 2 29 0 1462 206 80 9 chr4 108684699 108684886 -75603776 + MLT1A2 LTR MaLR 149 374 0 22 70 0 0 chr4 108685589 108685632 -75603030 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr4 108686258 108686281 -75602381 + AT_rich Low_complexity Low_complexity 1 23 0 285 325 95 8 chr4 108687414 108687540 -75601122 + MIR SINE MIR 56 192 -70 336 375 97 0 chr4 108687697 108687908 -75600754 + MIR SINE MIR 5 244 -18 214 354 13 0 chr4 108688274 108688353 -75600309 + MIR SINE MIR 67 146 -62 250 73 18 55 chr4 108688499 108688520 -75600142 + (TGAA)n Simple_repeat Simple_repeat 1 21 -32 2262 113 0 0 chr4 108688520 108688822 -75599840 + AluSx SINE Alu 1 302 -10 250 73 18 55 chr4 108688822 108688855 -75599807 + (TGAA)n Simple_repeat Simple_repeat 21 53 0 946 209 24 9 chr4 108689103 108689313 -75599349 + MER20 DNA MER1_type 2 214 -5 233 293 46 126 chr4 108689659 108689833 -75598829 - MIR SINE MIR -89 173 14 2401 71 0 0 chr4 108691757 108692054 -75596608 - AluY SINE Alu -14 297 1 21 0 0 0 chr4 108692580 108692601 -75596061 + AT_rich Low_complexity Low_complexity 1 21 0 1877 134 33 0 chr4 108692615 108692890 -75595772 - AluJb SINE Alu -28 284 1 182 355 0 74 chr4 108693451 108693572 -75595090 + MIR3 SINE MIR 2 113 -95 463 171 0 0 chr4 108693619 108693695 -75594967 + AluJ/FLAM SINE Alu 1 76 -236 21 36 0 0 chr4 108693789 108693817 -75594845 + AT_rich Low_complexity Low_complexity 1 28 0 361 306 112 41 chr4 108694015 108694257 -75594405 + MIR SINE MIR 4 262 0 205 269 0 0 chr4 108694287 108694339 -75594323 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 228 100 0 0 chr4 108694347 108694387 -75594275 + (TCTCTG)n Simple_repeat Simple_repeat 2 41 0 4940 218 11 42 chr4 108696037 108697344 -75591318 + L1PA12 LINE L1 1607 2873 -4708 2767 36 0 3 chr4 108697349 108697680 -75590982 + L1PA5 LINE L1 5825 6154 0 5348 132 17 11 chr4 108697689 108699306 -75589356 + L1PA15 LINE L1 4526 6162 -3 200 356 0 0 chr4 108700615 108700716 -75587946 - MIR SINE MIR -15 247 147 719 249 116 13 chr4 108700777 108701078 -75587584 + MER46C DNA MER2_type 6 337 -1 325 304 0 0 chr4 108701230 108701309 -75587353 + MIR SINE MIR 113 191 -71 27 49 0 0 chr4 108702103 108702144 -75586518 + AT_rich Low_complexity Low_complexity 1 41 0 192 314 0 0 chr4 108702441 108702492 -75586170 + L2 LINE L2 3246 3296 -17 36 40 0 0 chr4 108703122 108703172 -75585490 + AT_rich Low_complexity Low_complexity 1 50 0 21 36 0 0 chr4 108703267 108703295 -75585367 + AT_rich Low_complexity Low_complexity 1 28 0 523 267 20 7 chr4 108703389 108703539 -75585123 + L1MD3 LINE L1 7124 7275 -720 575 221 8 0 chr4 108703542 108703664 -75584998 + MLT1F1 LTR MaLR 1 123 -444 2671 167 41 12 chr4 108703672 108704234 -75584428 + L1MD3 LINE L1 7410 7987 -8 203 61 30 0 chr4 108704825 108704858 -75583804 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 2267 91 0 0 chr4 108704860 108705146 -75583516 - AluSx SINE Alu -26 286 1 259 255 0 20 chr4 108706624 108706722 -75581940 - HAL1 LINE L1 -1600 907 812 24 0 0 0 chr4 108708305 108708329 -75580333 + AT_rich Low_complexity Low_complexity 1 24 0 27732 122 13 67 chr4 108708494 108713865 -75574797 + L1P LINE L1 12 5094 -1052 461 323 49 77 chr4 108713967 108714786 -75573876 + L2 LINE L2 2466 3252 -20 356 82 82 0 chr4 108715562 108715623 -75573039 + MADE1 DNA Mariner 1 66 -14 309 78 20 0 chr4 108715627 108715678 -75572984 + MADE1 DNA Mariner 29 80 0 242 267 0 0 chr4 108715920 108715980 -75572682 + MLT1K LTR MaLR 529 588 0 255 250 37 9 chr4 108716417 108716525 -75572137 + L1ME LINE L1 5318 5428 -2380 645 133 0 0 chr4 108716537 108716635 -75572027 + L1PA5 LINE L1 1 98 -6048 * 34749 45 1 1 chr4 108716633 108721936 -75566726 + L1PA5 LINE L1 847 6154 0 369 228 26 95 chr4 108722106 108722295 -75566367 + L1ME LINE L1 5614 5789 -332 272 254 0 0 chr4 108722363 108722422 -75566240 + L2 LINE L2 3255 3313 0 25 0 0 0 chr4 108722441 108722466 -75566196 + AT_rich Low_complexity Low_complexity 1 25 0 400 333 43 61 chr4 108722877 108723270 -75565392 - L1ME4a LINE L1 -208 5913 5528 4546 130 20 81 chr4 108723329 108724616 -75564046 - L1PA13 LINE L1 -116 6698 5521 * 10710 205 37 21 chr4 108724608 108726044 -75562618 - L1PA13 LINE L1 -2884 3913 2502 2249 128 0 13 chr4 108726044 108726357 -75562305 + AluSg SINE Alu 1 309 -1 10710 205 37 21 chr4 108726357 108728777 -75559885 - L1PA13 LINE L1 -4295 2502 1 483 319 89 44 chr4 108728786 108729282 -75559380 - L1ME4a LINE L1 -1036 5110 4593 1832 133 29 60 chr4 108729424 108729740 -75558922 + AluSx SINE Alu 1 306 -6 33 85 0 0 chr4 108729785 108729867 -75558795 + AT_rich Low_complexity Low_complexity 1 82 0 473 302 117 4 chr4 108730124 108730372 -75558290 - MLT1L LTR MaLR -5 610 335 559 191 46 162 chr4 108730632 108730873 -75557789 + MER58C DNA MER1_type 2 214 -1 529 220 10 75 chr4 108730930 108731164 -75557498 - L1 LINE L1 -2172 3974 3757 592 284 124 14 chr4 108731164 108731446 -75557216 + L2 LINE L2 1899 2211 -1103 374 312 32 39 chr4 108731548 108731702 -75556960 + MIR SINE MIR 53 205 -57 2357 103 0 0 chr4 108731839 108732149 -75556513 + AluSx SINE Alu 1 310 -2 2593 75 3 3 chr4 108734263 108734634 -75554028 - L1PA7 LINE L1 0 6154 5809 186 43 0 0 chr4 108735324 108735347 -75553315 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 226 114 0 0 chr4 108735560 108735595 -75553067 + MADE1 DNA Mariner 46 80 0 200 292 0 0 chr4 108736315 108736363 -75552299 + (CA)n Simple_repeat Simple_repeat 1 48 0 3317 152 19 74 chr4 108736390 108737121 -75551541 + LTR8 LTR ERV1 1 691 0 700 318 79 15 chr4 108737157 108737552 -75551110 - L2 LINE L2 -129 3184 2764 2161 229 77 22 chr4 108737580 108738564 -75550098 + L1MC4 LINE L1 6886 8040 -2 285 16 62 31 chr4 108739067 108739131 -75549531 + (TATAA)n Simple_repeat Simple_repeat 4 69 0 258 247 73 71 chr4 108739479 108739677 -75548985 + MIR SINE MIR 32 216 -46 2366 97 0 0 chr4 108740833 108741133 -75547529 - AluSx SINE Alu -12 300 1 509 299 133 28 chr4 108741339 108741700 -75546962 + L2 LINE L2 2230 2628 -686 376 220 0 68 chr4 108742484 108742602 -75546060 + FLAM_A SINE Alu 21 130 -3 33 0 0 0 chr4 108744003 108744036 -75544626 + AT_rich Low_complexity Low_complexity 1 33 0 243 314 12 0 chr4 108744230 108744316 -75544346 + L1ME4a LINE L1 5494 5580 -2228 233 247 24 0 chr4 108744318 108744403 -75544259 + (CATA)n Simple_repeat Simple_repeat 4 90 0 433 287 75 67 chr4 108744417 108744699 -75543963 + L1ME4a LINE L1 5632 5915 -206 319 276 47 0 chr4 108744745 108744872 -75543790 + L1ME4a LINE L1 5989 6121 0 485 286 5 25 chr4 108744894 108745097 -75543565 + L1ME LINE L1 5605 5803 -318 892 136 0 15 chr4 108745121 108745253 -75543409 + FLAM_C SINE Alu 1 130 -13 212 293 183 0 chr4 108746170 108746252 -75542410 - L2 LINE L2 -8 3264 3168 477 255 10 0 chr4 108748524 108748622 -75540040 - MIR SINE MIR -138 124 26 2134 116 0 14 chr4 108748628 108748944 -75539718 + AluSx SINE Alu 1 312 0 240 276 55 24 chr4 108749092 108749219 -75539443 + MER103 DNA DNA 27 157 -9 2201 166 30 45 chr4 108750895 108751359 -75537303 - MSTB2 LTR MaLR 0 457 1 1821 83 4 8 chr4 108751481 108751723 -75536939 + AluSx SINE Alu 55 295 -17 195 173 0 67 chr4 108752237 108752312 -75536350 + GA-rich Low_complexity Low_complexity 1 70 0 23 0 0 0 chr4 108752362 108752385 -75536277 + AT_rich Low_complexity Low_complexity 1 23 0 2237 121 3 0 chr4 108752387 108752694 -75535968 + AluSx SINE Alu 1 308 -4 198 103 0 0 chr4 108752957 108752986 -75535676 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 1570 198 47 65 chr4 108753953 108754448 -75534214 + MLT1D LTR MaLR 20 505 0 240 247 99 0 chr4 108754461 108754542 -75534120 - L2 LINE L2 -4 3309 3221 752 286 139 50 chr4 108755348 108755445 -75533217 - MLT1L LTR MaLR -6 609 522 1999 159 0 0 chr4 108755445 108755734 -75532928 + AluJb SINE Alu 1 289 -23 752 286 139 50 chr4 108755734 108756195 -75532467 - MLT1L LTR MaLR -93 522 1 380 271 6 66 chr4 108756829 108756995 -75531667 - MLT1J2 LTR MaLR -42 408 253 2087 146 0 0 chr4 108757142 108757444 -75531218 - AluSx SINE Alu -6 306 5 693 305 62 9 chr4 108759122 108759490 -75529172 + MLT1J2 LTR MaLR 3 389 -57 1048 98 8 0 chr4 108759616 108759748 -75528914 + AluSq/x SINE Alu 1 133 -179 1828 136 7 0 chr4 108759749 108760022 -75528640 + AluSq SINE Alu 39 313 0 719 197 104 22 chr4 108760026 108760209 -75528453 + MER20 DNA MER1_type 18 215 -4 1854 158 0 0 chr4 108760259 108760564 -75528098 + AluSx SINE Alu 1 305 0 226 281 37 49 chr4 108760769 108760851 -75527811 + L2 LINE L2 3232 3312 -1 2854 3 0 3 chr4 108761485 108761796 -75526866 + AluYa5 SINE Alu 1 310 -1 953 164 59 74 chr4 108761813 108762123 -75526539 - MER33 DNA MER1_type -28 296 1 2340 80 0 46 chr4 108762737 108763061 -75525601 - AluSg SINE Alu -1 309 1 525 278 178 23 chr4 108763831 108764359 -75524303 + L2 LINE L2 2679 3312 -1 189 282 136 27 chr4 108765029 108765139 -75523523 - MIR SINE MIR -71 137 16 1979 100 92 0 chr4 108765581 108765852 -75522810 - AluSg SINE Alu -14 296 1 801 110 46 0 chr4 108767487 108767596 -75521066 + AluJb SINE Alu 5 118 -194 34 24 0 0 chr4 108767601 108767642 -75521020 + AT_rich Low_complexity Low_complexity 1 41 0 28 29 0 0 chr4 108769479 108769514 -75519148 + AT_rich Low_complexity Low_complexity 1 35 0 368 134 15 0 chr4 108771039 108771106 -75517556 - L1MB1 LINE L1 -4 6164 6097 675 241 38 28 chr4 108771382 108771594 -75517068 + MLT1H LTR MaLR 1 214 -335 325 242 65 24 chr4 108771609 108771733 -75516929 + L1M4 LINE L1 15 143 -6399 2392 137 70 39 chr4 108771742 108772210 -75516452 + Tigger2 DNA MER2_type 2236 2718 0 835 272 4 0 chr4 108772210 108772449 -75516213 + L1M4 LINE L1 1570 1809 -4837 2284 80 27 7 chr4 108772461 108772760 -75515902 + AluY SINE Alu 1 305 -6 210 37 0 0 chr4 108773394 108773421 -75515241 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 2322 103 0 7 chr4 108773820 108774122 -75514540 - AluSq SINE Alu -13 300 1 2331 125 37 0 chr4 108774137 108774512 -75514150 - L1MC2 LINE L1 -9 6335 5947 1781 162 24 0 chr4 108774525 108774815 -75513847 + AluJb SINE Alu 1 297 -15 345 310 0 0 chr4 108774989 108775089 -75513573 + MIR SINE MIR 157 256 -6 337 302 58 53 chr4 108775186 108775375 -75513287 + MIR SINE MIR 3 192 -16 183 325 60 24 chr4 108775433 108775516 -75513146 + MIR SINE MIR 42 127 -135 2337 100 0 0 chr4 108775551 108775852 -75512810 + AluSq SINE Alu 1 301 -12 193 319 0 69 chr4 108776276 108776392 -75512270 - L2 LINE L2 -183 3089 2982 299 43 0 22 chr4 108776603 108776649 -75512013 + (GA)n Simple_repeat Simple_repeat 2 46 0 673 121 0 0 chr4 108776653 108776744 -75511918 - AluJ/FLAM SINE Alu -221 91 1 7076 180 17 21 chr4 108826754 108827795 -75460867 + L1PA16 LINE L1 3697 4740 -1426 1870 212 38 75 chr4 108827795 108828370 -75460292 + MLT2B3 LTR ERVL 1 554 0 7076 180 17 21 chr4 108828370 108829783 -75458879 + L1PA16 LINE L1 4740 6140 -26 303 303 45 28 chr4 108829876 108830054 -75458608 + L1 LINE L1 5192 5372 -774 48 32 0 0 chr4 108831505 108831567 -75457095 + AT_rich Low_complexity Low_complexity 1 62 0 2233 55 41 7 chr4 108834204 108834497 -75454165 - AluY SINE Alu -8 303 1 14380 98 18 7 chr4 108834929 108837788 -75450874 + L1PA8 LINE L1 3303 6169 -3 949 186 27 11 chr4 108838066 108838249 -75450413 + MER20 DNA MER1_type 34 219 0 24 32 0 0 chr4 108838587 108838618 -75450044 + AT_rich Low_complexity Low_complexity 1 31 0 423 302 66 50 chr4 108838933 108839855 -75448807 + L1M4 LINE L1 2378 3314 -2832 589 301 37 41 chr4 108839896 108840142 -75448520 + MIR SINE MIR 17 261 -1 425 299 61 55 chr4 108840185 108840694 -75447968 + L1M4 LINE L1 3354 3865 -2281 7737 215 72 25 chr4 108840788 108843831 -75444831 + L1PBb LINE L1 400 3670 -2533 2294 76 3 7 chr4 108844080 108844381 -75444281 + AluSg SINE Alu 1 300 -10 226 100 25 0 chr4 108845255 108845295 -75443367 + Alu SINE Alu 253 293 -6 27 49 0 0 chr4 108845795 108845836 -75442826 + AT_rich Low_complexity Low_complexity 1 41 0 405 327 47 47 chr4 108846209 108846420 -75442242 - MLT1J2 LTR MaLR -2 448 238 193 182 146 18 chr4 108846690 108846745 -75441917 - MIR SINE MIR -111 151 90 301 252 0 75 chr4 108846845 108846952 -75441710 - MIR SINE MIR 0 262 164 243 294 22 43 chr4 108847315 108847407 -75441255 - MIR3 SINE MIR -42 166 77 * 492 286 14 14 chr4 108847405 108847545 -75441117 - L3 LINE CR1 -225 1352 1213 439 137 14 27 chr4 108847610 108847683 -75440979 - MSTD LTR MaLR -67 298 227 754 202 146 39 chr4 108847739 108847820 -75440842 - MSTD LTR MaLR -138 258 187 1546 144 4 53 chr4 108847820 108848084 -75440578 - AluSx SINE Alu -8 304 54 754 202 146 39 chr4 108848084 108848235 -75440427 - MSTD LTR MaLR -209 187 1 3004 162 50 0 chr4 108848235 108848777 -75439885 + L1MB3 LINE L1 5615 6183 0 200 143 24 0 chr4 108849183 108849225 -75439437 + (AATAG)n Simple_repeat Simple_repeat 2 44 0 374 362 87 5 chr4 108849411 108849618 -75439044 - L1ME LINE L1 -316 5805 5582 181 354 0 0 chr4 108849806 108849871 -75438791 + L2 LINE L2 3230 3294 -19 355 263 15 36 chr4 108850136 108850273 -75438389 - L1MC5 LINE L1 -440 7521 7388 1070 222 26 63 chr4 108850317 108850700 -75437962 - L1MC5 LINE L1 -585 7376 7008 1551 193 10 17 chr4 108850703 108850999 -75437663 + AluJb SINE Alu 1 294 -18 31 104 0 0 chr4 108851051 108851166 -75437496 + AT_rich Low_complexity Low_complexity 1 115 0 1014 261 30 46 chr4 108851166 108851570 -75437092 - L1MC5 LINE L1 -860 6948 6544 307 261 127 52 chr4 108851970 108852205 -75436457 - L1MDa LINE L1 -4600 1940 1716 26 0 0 0 chr4 108852306 108852332 -75436330 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr4 108852448 108852471 -75436191 + AT_rich Low_complexity Low_complexity 1 23 0 260 308 14 98 chr4 108852714 108852857 -75435805 + MLT1H1 LTR MaLR 9 139 -416 205 302 16 0 chr4 108853850 108853913 -75434749 + MIR3 SINE MIR 118 181 -27 1219 326 137 16 chr4 108855433 108856298 -75432364 + ERVL LTR ERVL 2789 3815 -1949 353 42 21 0 chr4 108856424 108856472 -75432190 - L1PA6 LINE L1 -4 6150 6102 2537 140 34 2 chr4 108857875 108858289 -75430373 - MSTA LTR MaLR 0 428 2 507 262 0 8 chr4 108858360 108858482 -75430180 - L2 LINE L2 -8 3305 3185 326 322 79 6 chr4 108858571 108858748 -75429914 + LTR67 LTR ERVL 365 554 -3 201 322 110 25 chr4 108859779 108859897 -75428765 + L2 LINE L2 3141 3268 -4 464 0 18 0 chr4 108860130 108860186 -75428476 + (TTTA)n Simple_repeat Simple_repeat 2 58 0 1902 166 94 47 chr4 108865068 108865370 -75423292 + MLT1C LTR MaLR 1 244 -146 2189 125 125 10 chr4 108865370 108865754 -75422908 - MSTA LTR MaLR 0 428 1 1902 166 94 47 chr4 108865754 108865909 -75422753 + MLT1C LTR MaLR 244 390 0 289 128 0 0 chr4 108868373 108868420 -75420242 - MADE1 DNA Mariner -33 47 1 342 0 0 0 chr4 108869455 108869493 -75419169 + (TG)n Simple_repeat Simple_repeat 2 39 0 21 57 0 0 chr4 108870200 108870235 -75418427 + AT_rich Low_complexity Low_complexity 1 35 0 383 260 30 48 chr4 108870314 108870516 -75418146 - MIR SINE MIR -50 212 19 33 56 0 0 chr4 108871075 108871129 -75417533 + AT_rich Low_complexity Low_complexity 1 54 0 292 281 22 0 chr4 108871482 108871571 -75417091 + GA-rich Low_complexity Low_complexity 2 92 0 559 213 34 32 chr4 108871638 108871844 -75416818 - ALR/Alpha Satellite centromeric 0 206 1 5054 88 47 22 chr4 108871872 108872686 -75415976 - L1PA8 LINE L1 -9 6163 5290 2948 15 0 0 chr4 108872667 108873004 -75415658 - L1HS LINE L1 0 6155 5819 * 807 127 0 0 chr4 108873009 108873143 -75415519 - L1P LINE L1 -778 6019 5886 * 2774 133 4 0 chr4 108873142 108873592 -75415070 + L1P LINE L1 4768 5219 -927 2931 127 23 2 chr4 108873684 108874166 -75414496 - L1PA13 LINE L1 -2 6161 5670 12124 215 30 22 chr4 108874166 108875128 -75413534 - L1PA13 LINE L1 -1937 4860 3908 1856 164 3 0 chr4 108875128 108875420 -75413242 - AluSx SINE Alu -19 293 1 12124 215 30 22 chr4 108875420 108875657 -75413005 - L1PA13 LINE L1 -2889 3908 3675 2277 81 3 3 chr4 108875657 108875954 -75412708 - AluY SINE Alu -14 297 1 12124 215 30 22 chr4 108875954 108877618 -75411044 - L1PA13 LINE L1 -3122 3675 2027 2620 55 0 0 chr4 108877618 108877927 -75410735 - AluY SINE Alu -2 309 1 12124 215 30 22 chr4 108877927 108879851 -75408811 - L1PA13 LINE L1 -4770 2027 2 2051 105 7 7 chr4 108879939 108880225 -75408437 - AluSq SINE Alu -3 310 25 188 430 18 18 chr4 108880240 108880468 -75408194 + L2 LINE L2 2686 2913 -401 221 271 0 0 chr4 108880555 108880614 -75408048 + T-rich Low_complexity Low_complexity 1 59 0 539 283 170 55 chr4 108882560 108882960 -75405702 + MLT1K LTR MaLR 102 547 -41 24 53 0 0 chr4 108883834 108883872 -75404790 + AT_rich Low_complexity Low_complexity 1 38 0 1694 142 47 92 chr4 108883884 108884264 -75404398 + THE1C LTR MaLR 1 363 -12 45 79 0 0 chr4 108885042 108885143 -75403519 + AT_rich Low_complexity Low_complexity 1 101 0 331 206 162 0 chr4 108885439 108885507 -75403155 + Tigger7 DNA MER2_type 2 80 -2407 279 79 0 0 chr4 108885522 108885560 -75403102 + (GGGAGA)n Simple_repeat Simple_repeat 3 40 0 13044 22 0 0 chr4 108885662 108887838 -75400824 - L1PA3 LINE L1 -148 6007 3833 415 344 57 71 chr4 108891774 108892265 -75396397 - L2 LINE L2 -568 2746 2263 5228 18 0 0 chr4 108892551 108893153 -75395509 - L1PA3 LINE L1 0 6155 5554 181 133 33 0 chr4 108893623 108893653 -75395009 + MIR3 SINE MIR 129 159 -49 533 193 257 5 chr4 108894966 108895153 -75393509 - MER106A DNA MER1_type 0 236 3 2147 110 0 3 chr4 108895338 108895639 -75393023 - AluSc SINE Alu -9 300 1 300 289 63 5 chr4 108896280 108896421 -75392241 + MIR SINE MIR 8 154 -59 279 0 0 0 chr4 108898427 108898458 -75390204 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 34859 39 1 1 chr4 108898466 108903533 -75385129 - L1PA4 LINE L1 -3 6152 1086 1204 173 58 0 chr4 108903635 108903860 -75384802 + Tigger7 DNA MER2_type 2254 2491 0 336 226 169 8 chr4 108903919 108904043 -75384619 + L1ME4a LINE L1 5977 6120 -1 203 88 29 0 chr4 108904462 108904496 -75384166 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 433 291 77 0 chr4 108905187 108905304 -75383358 - L2 LINE L2 0 3272 3147 21 0 0 0 chr4 108906505 108906526 -75382136 + AT_rich Low_complexity Low_complexity 1 21 0 31 58 0 0 chr4 108907472 108907524 -75381138 + AT_rich Low_complexity Low_complexity 1 52 0 188 358 67 17 chr4 108908803 108908923 -75379739 + MIR SINE MIR 107 232 -30 339 213 0 0 chr4 108909277 108909352 -75379310 + (CATA)n Simple_repeat Simple_repeat 2 76 0 354 333 113 20 chr4 108910304 108910499 -75378163 - L3 LINE CR1 -95 1482 1270 245 400 24 0 chr4 108910644 108910729 -75377933 + L2 LINE L2 3166 3252 -20 1197 248 136 90 chr4 108910793 108911526 -75377136 - LTR41 LTR ERVL -6 767 1 262 61 76 0 chr4 108912623 108912689 -75375973 + (TCTA)n Simple_repeat Simple_repeat 1 71 0 2426 214 108 7 chr4 108912917 108913510 -75375152 + MLT1E1 LTR MaLR 2 654 0 21 0 0 0 chr4 108914584 108914605 -75374057 + AT_rich Low_complexity Low_complexity 1 21 0 1494 157 11 32 chr4 108915581 108915948 -75372714 - AluSx SINE Alu 0 398 38 21 0 0 0 chr4 108916147 108916168 -75372494 + AT_rich Low_complexity Low_complexity 1 21 0 265 250 20 14 chr4 108917800 108917948 -75370714 + (TA)n Simple_repeat Simple_repeat 2 150 0 240 143 0 24 chr4 108917957 108917999 -75370663 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 264 260 0 0 chr4 108918091 108918164 -75370498 - L1MC4 LINE L1 -1356 6686 6614 183 156 0 0 chr4 108918295 108918327 -75370335 + (TAGA)n Simple_repeat Simple_repeat 2 33 0 570 241 42 47 chr4 108918674 108918910 -75369752 - MER5C DNA MER1_type -45 279 45 23 68 0 0 chr4 108918910 108918954 -75369708 + AT_rich Low_complexity Low_complexity 1 44 0 24328 28 0 0 chr4 108918963 108922673 -75365989 - L1PA2 LINE L1 0 6155 2463 2360 124 16 8 chr4 108922845 108923217 -75365445 - THE1C LTR MaLR 0 375 1 331 346 29 0 chr4 108923892 108924028 -75364634 - MIR SINE MIR -122 140 1 244 307 11 59 chr4 108924148 108924267 -75364395 - MIR SINE MIR -63 145 54 207 100 0 0 chr4 108925322 108925352 -75363310 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 571 167 0 32 chr4 108925379 108925592 -75363070 - AluJb SINE Alu -14 298 3 244 319 60 43 chr4 108925997 108926113 -75362549 + L2 LINE L2 3154 3271 -1 1384 172 88 0 chr4 108927693 108927799 -75360863 - L1PB4 LINE L1 0 6156 6051 407 275 125 10 chr4 108927799 108927999 -75360663 - L1MA5 LINE L1 -259 6041 5819 294 29 0 0 chr4 108928038 108928073 -75360589 + (TG)n Simple_repeat Simple_repeat 1 35 0 537 16 0 0 chr4 108928073 108928135 -75360527 + (TA)n Simple_repeat Simple_repeat 1 62 0 21 36 0 0 chr4 108929472 108929500 -75359162 + AT_rich Low_complexity Low_complexity 1 28 0 182 310 169 0 chr4 108930372 108930443 -75358219 - MIR SINE MIR -64 144 62 412 332 98 8 chr4 108930808 108931043 -75357619 - MLT1J LTR MaLR -254 257 2 29 0 0 0 chr4 108931417 108931446 -75357216 + AT_rich Low_complexity Low_complexity 1 29 0 13491 144 31 28 chr4 108931865 108934271 -75354391 + Tigger1 DNA MER2_type 1 2412 -6 23 68 0 0 chr4 108934519 108934563 -75354099 + AT_rich Low_complexity Low_complexity 1 44 0 2529 146 59 70 chr4 108934590 108935132 -75353530 - L1MC1 LINE L1 0 6333 5798 1251 128 27 0 chr4 108935162 108935349 -75353313 + THE1C LTR MaLR 1 192 -183 893 242 41 0 chr4 108935366 108935560 -75353102 - L1MC1 LINE L1 -2011 5797 5596 1367 91 0 6 chr4 108935946 108936121 -75352541 + AluSq SINE Alu 1 174 -139 1012 133 67 6 chr4 108936140 108936305 -75352357 + THE1C LTR MaLR 190 364 0 6419 173 12 19 chr4 108936305 108938586 -75350076 + L1PA16 LINE L1 3901 6157 -9 1969 171 0 0 chr4 108938633 108938955 -75349707 - L1MC/D LINE L1 -527 5806 5485 300 102 0 0 chr4 108938964 108939013 -75349649 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 363 355 147 16 chr4 108940307 108940682 -75347980 + L2 LINE L2 2332 2755 -559 9798 49 4 3 chr4 108940692 108942847 -75345815 + L1PA5 LINE L1 3997 6154 0 679 190 8 0 chr4 108942903 108943024 -75345638 - MER45 DNA AcHobo 0 1581 1460 259 350 33 52 chr4 108943125 108943355 -75345307 + L2 LINE L2 2879 3096 -176 491 269 38 32 chr4 108943495 108943681 -75344981 + L2 LINE L2 3118 3304 -9 1474 152 33 0 chr4 108943688 108943931 -75344731 - Tigger2 DNA MER2_type 0 2718 2468 3004 173 20 4 chr4 108943977 108944538 -75344124 - Tigger2 DNA MER2_type -2148 570 1 681 321 182 29 chr4 108944982 108945648 -75343014 - L2 LINE L2 -397 2917 2150 596 262 110 66 chr4 108945865 108946182 -75342480 + MER102b DNA MER1_type 11 341 0 29 0 0 0 chr4 108947747 108947776 -75340886 + AT_rich Low_complexity Low_complexity 1 29 0 522 296 101 22 chr4 108948200 108948518 -75340144 + L1ME3A LINE L1 4967 5309 -837 623 328 130 28 chr4 108948520 108949030 -75339632 + L1ME3A LINE L1 5314 5879 -291 34 0 0 0 chr4 108949204 108949238 -75339424 + AT_rich Low_complexity Low_complexity 1 34 0 42 36 0 0 chr4 108949532 108949588 -75339074 + AT_rich Low_complexity Low_complexity 1 56 0 23 0 0 0 chr4 108949808 108949831 -75338831 + AT_rich Low_complexity Low_complexity 1 23 0 1434 239 22 30 chr4 108949911 108950102 -75338560 + MLT1A1 LTR MaLR 1 189 -176 3484 71 19 2 chr4 108950102 108950567 -75338095 + L1PA8 LINE L1 5694 6166 -6 1434 239 22 30 chr4 108950567 108950743 -75337919 + MLT1A1 LTR MaLR 189 365 0 321 266 159 0 chr4 108951490 108951603 -75337059 + L1ME2 LINE L1 10 140 -5930 6374 127 16 19 chr4 108951752 108953045 -75335617 - L1MA3 LINE L1 0 7724 6436 * 7024 208 45 36 chr4 108953043 108954037 -75334625 - L1MA3 LINE L1 -1879 5686 4703 2276 116 3 0 chr4 108954037 108954347 -75334315 - AluSq SINE Alu -2 311 1 7024 208 45 36 chr4 108954347 108956249 -75332413 - L1MA3 LINE L1 -2862 4703 2759 440 63 0 0 chr4 108956255 108956318 -75332344 - L1MA3 LINE L1 -5284 2281 2219 * 1282 207 36 8 chr4 108956292 108956543 -75332119 - L1M1 LINE L1 -7295 270 13 1129 228 62 59 chr4 108956676 108957032 -75331630 + MSTD LTR MaLR 1 357 -39 362 237 89 52 chr4 108957051 108957186 -75331476 + L1ME2 LINE L1 390 529 -5541 473 281 56 59 chr4 108957354 108958231 -75330431 + L1ME2 LINE L1 511 1431 -4830 9887 33 0 0 chr4 108958271 108960227 -75328435 - L1PA4 LINE L1 -3 6152 4197 2927 255 82 60 chr4 108960227 108960821 -75327841 + L1ME2 LINE L1 3507 4087 -2011 2108 116 3 0 chr4 108960821 108961106 -75327556 + AluSx SINE Alu 1 286 -26 2927 255 82 60 chr4 108961106 108961122 -75327540 + L1ME2 LINE L1 4087 4101 -1997 324 0 0 0 chr4 108961122 108961158 -75327504 + (GAA)n Simple_repeat Simple_repeat 2 37 0 2927 255 82 60 chr4 108961158 108962107 -75326555 + L1ME2 LINE L1 4101 5028 -1070 1610 35 0 10 chr4 108962107 108962308 -75326354 + L1PA2 LINE L1 5957 6155 0 2927 255 82 60 chr4 108962308 108963338 -75325324 + L1ME2 LINE L1 5028 6098 0 2169 177 15 15 chr4 108963660 108964361 -75324301 + L1P5 LINE L1 4983 5682 -474 20202 168 15 27 chr4 108964361 108971602 -75317060 + L1PB4 LINE L1 1 7134 -465 1749 83 28 4 chr4 108971602 108971851 -75316811 + L1PA14 LINE L1 5901 6160 -1 2650 152 34 2 chr4 108971851 108972316 -75316346 + L1PB4 LINE L1 7113 7594 0 1705 176 102 50 chr4 108972484 108972926 -75315736 + MLT1C LTR MaLR 3 467 0 1169 185 122 0 chr4 108973115 108973401 -75315261 + MER33 DNA MER1_type 2 322 -2 292 355 33 26 chr4 108973441 108973593 -75315069 + MIR3 SINE MIR 20 172 -36 202 206 29 15 chr4 108973678 108973746 -75314916 + (TTATA)n Simple_repeat Simple_repeat 1 69 0 693 243 107 14 chr4 108973805 108974085 -75314577 - MER46C DNA MER2_type -29 309 4 203 194 0 0 chr4 108974283 108974319 -75314343 + T-rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr4 108975615 108975643 -75313019 + AT_rich Low_complexity Low_complexity 1 28 0 2254 88 7 0 chr4 108976294 108976604 -75312058 - AluSq SINE Alu 0 312 1 25 0 0 0 chr4 108976700 108976725 -75311937 + AT_rich Low_complexity Low_complexity 1 25 0 255 173 0 0 chr4 108976911 108976963 -75311699 + (TA)n Simple_repeat Simple_repeat 1 52 0 1450 180 154 29 chr4 108977085 108977430 -75311232 + MSTD LTR MaLR 9 396 0 24 32 0 0 chr4 108978298 108978329 -75310333 + AT_rich Low_complexity Low_complexity 1 31 0 328 203 0 29 chr4 108978329 108978398 -75310264 + Tigger2 DNA MER2_type 1 67 -2651 * 2573 124 33 42 chr4 108978390 108978840 -75309822 + Tigger2 DNA MER2_type 2273 2718 0 25 0 0 0 chr4 108980528 108980553 -75308109 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr4 108982141 108982170 -75306492 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 108982425 108982447 -75306215 + AT_rich Low_complexity Low_complexity 1 22 0 195 320 0 0 chr4 108983774 108983824 -75304838 + L2 LINE L2 2599 2648 -666 43894 41 1 4 chr4 108983830 108990029 -75298633 - L1PA2 LINE L1 0 6155 1 2334 88 0 0 chr4 108990037 108990331 -75298331 - AluY SINE Alu -17 294 1 23 0 0 0 chr4 108990374 108990397 -75298265 + AT_rich Low_complexity Low_complexity 1 23 0 3159 146 23 26 chr4 108990908 108991437 -75297225 + MER1A DNA MER1_type 1 527 0 1673 136 3 71 chr4 108992232 108992527 -75296135 - AluSx SINE Alu -37 275 1 213 192 80 16 chr4 108992786 108992911 -75295751 + (TA)n Simple_repeat Simple_repeat 1 133 0 2062 128 10 0 chr4 108992960 108993257 -75295405 - AluSg SINE Alu -8 302 3 294 244 41 159 chr4 108995435 108995730 -75292932 + MIR SINE MIR 1 260 -2 27 0 0 0 chr4 108995774 108995801 -75292861 + AT_rich Low_complexity Low_complexity 1 27 0 287 232 0 72 chr4 108996203 108996272 -75292390 + L2 LINE L2 3250 3313 0 210 322 99 25 chr4 108996501 108996622 -75292040 + MIR SINE MIR 117 246 -16 10216 39 4 0 chr4 108997403 108999406 -75289256 - L1PA4 LINE L1 0 6155 4131 233 258 90 84 chr4 108999651 108999806 -75288856 + MIR SINE MIR 12 167 -95 273 379 80 23 chr4 108999902 109000170 -75288492 + L2 LINE L2 2707 2987 -285 410 330 29 76 chr4 109000299 109000614 -75288048 + L2 LINE L2 1138 1437 -1877 22 35 0 0 chr4 109000878 109000907 -75287755 + AT_rich Low_complexity Low_complexity 1 29 0 326 333 42 30 chr4 109000931 109001096 -75287566 - L2 LINE L2 -218 3054 2888 360 307 50 0 chr4 109001611 109001712 -75286950 - L2 LINE L2 -1125 2189 2084 23 33 0 0 chr4 109002077 109002107 -75286555 + AT_rich Low_complexity Low_complexity 1 30 0 5235 145 16 21 chr4 109002382 109003824 -75284838 - L1PA16 LINE L1 0 6166 4728 357 24 0 0 chr4 109004837 109004879 -75283783 + (TG)n Simple_repeat Simple_repeat 2 43 0 22 0 0 0 chr4 109005192 109005214 -75283448 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr4 109005630 109005653 -75283009 + (CAA)n Simple_repeat Simple_repeat 2 24 0 245 235 10 88 chr4 109006782 109006884 -75281778 + MLT1K LTR MaLR 495 588 0 306 0 0 0 chr4 109006957 109006991 -75281671 + (CA)n Simple_repeat Simple_repeat 2 35 0 1887 113 0 8 chr4 109007019 109007297 -75281365 + AluSq SINE Alu 37 313 0 233 250 10 50 chr4 109008863 109008963 -75279699 + A-rich Low_complexity Low_complexity 3 98 0 236 167 42 0 chr4 109009191 109009239 -75279423 - L1MA7 LINE L1 -73 6218 6169 509 89 56 0 chr4 109009239 109009329 -75279333 + L1MA7 LINE L1 6197 6291 0 34 0 0 0 chr4 109009329 109009363 -75279299 + AT_rich Low_complexity Low_complexity 1 34 0 504 314 31 0 chr4 109009455 109009614 -75279048 + MIR SINE MIR 63 226 -36 896 203 0 61 chr4 109010169 109010366 -75278296 + MER58A DNA MER1_type 39 223 -1 399 227 64 0 chr4 109010703 109010813 -75277849 - LTR33A LTR ERVL -2 521 405 26 0 0 0 chr4 109011280 109011306 -75277356 + AT_rich Low_complexity Low_complexity 1 26 0 2002 277 150 37 chr4 109011385 109012506 -75276156 - HAL1 LINE L1 -1258 1249 2 458 335 43 40 chr4 109013051 109013329 -75275333 - MLT1J LTR MaLR 0 511 233 1577 231 3 24 chr4 109013369 109013742 -75274920 - MLT1A1 LTR MaLR 0 365 1 587 337 42 42 chr4 109013874 109014377 -75274285 + L2 LINE L2 2625 3136 -177 37 52 0 0 chr4 109015302 109015360 -75273302 + AT_rich Low_complexity Low_complexity 1 58 0 199 346 39 13 chr4 109015524 109015602 -75273060 + L2 LINE L2 3099 3178 -94 1914 155 0 0 chr4 109015682 109015998 -75272664 - AluSx SINE Alu 0 316 1 21 36 0 0 chr4 109016580 109016608 -75272054 + AT_rich Low_complexity Low_complexity 1 28 0 1122 215 20 8 chr4 109017117 109017559 -75271103 + L1M2 LINE L1 1 517 -6332 24613 42 47 1 chr4 109017698 109020845 -75267817 - L1P LINE L1 -2852 3294 2 1726 182 35 25 chr4 109021306 109021702 -75266960 - L1MA7 LINE L1 0 6291 5892 908 248 178 4 chr4 109021802 109022060 -75266602 + L1M2b LINE L1 504 806 -6403 9439 189 24 34 chr4 109022065 109022706 -75265956 + L1M2b LINE L1 2817 3463 -3745 2271 94 10 13 chr4 109022706 109023015 -75265647 + AluY SINE Alu 2 309 -2 9439 189 24 34 chr4 109023015 109025050 -75263612 + L1M2b LINE L1 3463 5465 -1743 1066 154 42 9 chr4 109025038 109025252 -75263410 + L1MA4A LINE L1 5932 6152 -151 * 183 389 40 20 chr4 109025997 109026146 -75262516 + MIR3 SINE MIR 34 185 -23 226 317 109 0 chr4 109026924 109027025 -75261637 - MIR SINE MIR -2 260 149 1792 60 4 17 chr4 109027260 109027492 -75261170 - AluY SINE Alu -3 308 80 22 0 0 0 chr4 109027554 109027576 -75261086 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr4 109029215 109029238 -75259424 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 7699 21 0 0 chr4 109029238 109030692 -75257970 - L1PA2 LINE L1 -6 6149 4697 2964 165 29 47 chr4 109030806 109031483 -75257179 - L1M2 LINE L1 -473 5818 5182 4939 27 7 8 chr4 109031483 109032076 -75256586 - L1PA3 LINE L1 -3 6152 5561 2964 165 29 47 chr4 109032076 109032278 -75256384 - L1M2 LINE L1 -1109 5182 4978 283 254 30 0 chr4 109032317 109032384 -75256278 + MER2 DNA MER2_type 11 79 -266 8669 142 20 4 chr4 109032389 109033814 -75254848 - Tigger1 DNA MER2_type -1 2417 970 1841 124 0 0 chr4 109033836 109034093 -75254569 - AluSq SINE Alu -23 290 34 3952 180 27 13 chr4 109034109 109034886 -75253776 - L1PB4 LINE L1 -8 6148 5361 1289 240 33 0 chr4 109034971 109035300 -75253362 - L1PB4 LINE L1 -782 5364 5025 641 189 0 0 chr4 109035300 109035406 -75253256 - U6 snRNA snRNA 0 107 2 6009 137 6 49 chr4 109035407 109035977 -75252685 - Tigger1 DNA MER2_type -1443 975 467 2030 130 25 3 chr4 109035977 109036299 -75252363 - L1PA15 LINE L1 0 6165 5837 6009 137 6 49 chr4 109036299 109036746 -75251916 - Tigger1 DNA MER2_type -1951 467 2 823 240 74 35 chr4 109036746 109037001 -75251661 + MER2 DNA MER2_type 81 345 0 4279 165 22 59 chr4 109037001 109037989 -75250673 - L1PB4 LINE L1 -1168 4978 4027 1360 259 101 2 chr4 109038002 109038302 -75250360 - L1M4 LINE L1 -2912 3820 3551 1634 149 20 43 chr4 109038302 109038603 -75250059 - AluSx SINE Alu -18 294 1 1360 259 101 2 chr4 109038603 109038807 -75249855 - L1M4 LINE L1 -3181 3551 3266 4571 200 183 8 chr4 109038814 109039889 -75248773 + L1M1 LINE L1 22 1284 -6281 2623 346 23 24 chr4 109039889 109040628 -75248034 - L1M4 LINE L1 -4981 1672 935 238 328 0 0 chr4 109040678 109040736 -75247926 - L1M4 LINE L1 -6309 344 287 245 275 58 0 chr4 109040764 109040833 -75247829 - L1M4 LINE L1 -6287 366 294 238 358 11 21 chr4 109040871 109040966 -75247696 - L1M4 LINE L1 -6291 362 269 517 318 46 28 chr4 109041213 109041430 -75247232 - L1M3de LINE L1 -5634 1019 799 226 320 57 33 chr4 109041478 109041600 -75247062 - L1M3de LINE L1 -5503 1150 1026 253 269 56 28 chr4 109043529 109043637 -75245025 - L1ME4a LINE L1 -50 6071 5961 253 289 60 0 chr4 109044193 109044276 -75244386 - L1ME4a LINE L1 -2002 5806 5719 397 315 138 51 chr4 109044393 109045365 -75243297 - L1ME4a LINE L1 -762 5384 4329 265 255 198 4 chr4 109045575 109045822 -75242840 - L1ME4a LINE L1 -2144 4002 3708 481 290 106 61 chr4 109046374 109046981 -75241681 - L1ME4a LINE L1 -2876 3270 2627 1037 169 98 4 chr4 109047082 109047337 -75241325 + MER33 DNA MER1_type 46 324 0 21 0 0 0 chr4 109047903 109047924 -75240738 + AT_rich Low_complexity Low_complexity 1 21 0 371 55 0 18 chr4 109048604 109048659 -75240003 + (TA)n Simple_repeat Simple_repeat 2 55 0 5981 31 24 7 chr4 109049508 109050249 -75238413 + L1P LINE L1 4487 5240 -906 935 55 0 16 chr4 109050349 109050477 -75238185 + L1PA4 LINE L1 6027 6152 -3 26 50 0 0 chr4 109050639 109050679 -75237983 + AT_rich Low_complexity Low_complexity 1 40 0 5566 183 38 36 chr4 109051070 109051197 -75237465 + L1MC1 LINE L1 4606 4731 -1602 1792 151 140 11 chr4 109051197 109051575 -75237087 - MSTA LTR MaLR 0 428 2 5566 183 38 36 chr4 109051575 109051710 -75236952 + L1MC1 LINE L1 4731 4864 -1469 1662 133 0 16 chr4 109051710 109052004 -75236658 + AluSq SINE Alu 42 331 0 5566 183 38 36 chr4 109052004 109053474 -75235188 + L1MC1 LINE L1 4864 6333 0 1074 267 92 18 chr4 109054178 109054579 -75234083 - L1ME3A LINE L1 -211 5959 5529 267 303 76 14 chr4 109054587 109054798 -75233864 - L1ME3A LINE L1 -1747 4399 4176 2178 122 0 6 chr4 109054826 109055137 -75233525 - AluSx SINE Alu -3 309 1 885 166 52 0 chr4 109055139 109055332 -75233330 - L1MA7 LINE L1 -10 6281 6079 797 206 68 156 chr4 109055348 109055964 -75232698 - L1ME3A LINE L1 -1979 4167 3606 1961 272 30 4 chr4 109055987 109056480 -75232182 + L1M3d LINE L1 7 512 -5379 339 342 136 0 chr4 109056495 109056679 -75231983 + L1M3d LINE L1 302 510 -5381 * 5903 259 52 26 chr4 109056650 109057733 -75230929 + L1M3d LINE L1 255 1309 -4661 2298 88 0 3 chr4 109057733 109058039 -75230623 + AluY SINE Alu 1 305 -6 5903 259 52 26 chr4 109058039 109060732 -75227930 + L1M3d LINE L1 1309 3800 -2170 476 189 0 0 chr4 109060734 109060824 -75227838 + AluJb SINE Alu 6 95 -217 964 176 6 12 chr4 109060875 109061045 -75227617 + AluJb SINE Alu 100 268 -44 2808 202 98 48 chr4 109061049 109061915 -75226747 + L1M3d LINE L1 3785 4693 -1277 899 260 161 44 chr4 109063127 109063632 -75225030 + MLT1F1 LTR MaLR 1 560 -7 21 0 0 0 chr4 109063718 109063739 -75224923 + AT_rich Low_complexity Low_complexity 1 21 0 2856 179 15 0 chr4 109063761 109064286 -75224376 - L1PA16 LINE L1 -9 6157 5625 27 0 0 0 chr4 109064286 109064313 -75224349 + AT_rich Low_complexity Low_complexity 1 27 0 5738 173 29 1 chr4 109064477 109065546 -75223116 + L1PA14 LINE L1 3568 4666 -1480 5607 104 14 0 chr4 109065542 109066340 -75222322 + L1PA14 LINE L1 5352 6160 -1 * 21 71 0 0 chr4 109066819 109066861 -75221801 + AT_rich Low_complexity Low_complexity 1 42 0 942 227 14 0 chr4 109067695 109067979 -75220683 - L1MC/D LINE L1 -743 5403 5144 29 0 0 0 chr4 109068017 109068046 -75220616 + AT_rich Low_complexity Low_complexity 1 29 0 345 308 42 14 chr4 109070479 109070693 -75217969 + L1M4 LINE L1 2961 3180 -2966 26 0 0 0 chr4 109070695 109070721 -75217941 + AT_rich Low_complexity Low_complexity 1 26 0 6549 163 7 6 chr4 109070721 109072238 -75216424 - L1MA3 LINE L1 0 6305 4788 * 13708 59 36 4 chr4 109072217 109074056 -75214606 - L1PA6 LINE L1 -758 5388 3492 6061 66 1 2 chr4 109074057 109074848 -75213814 + L1PA6 LINE L1 5365 6154 0 1015 229 125 21 chr4 109074888 109075312 -75213350 - Charlie2b DNA MER1_type -195 2587 2120 42 36 0 0 chr4 109075319 109075375 -75213287 + AT_rich Low_complexity Low_complexity 1 56 0 1781 114 28 41 chr4 109075485 109075573 -75213089 - L1P5 LINE L1 -595 5556 5468 2158 132 0 0 chr4 109075573 109075884 -75212778 - AluSq SINE Alu 0 313 3 1781 114 28 41 chr4 109075884 109076184 -75212478 - L1P5 LINE L1 -683 5468 5174 * 2582 216 83 22 chr4 109076151 109077771 -75210891 - L1PBa LINE L1 -4951 1912 49 5954 187 34 3 chr4 109077782 109079416 -75209246 - L1MC1 LINE L1 -5 6328 4643 926 358 99 32 chr4 109079492 109080236 -75208426 + L2 LINE L2 1932 2806 -507 1803 147 43 0 chr4 109080236 109080535 -75208127 + AluJb SINE Alu 1 312 0 926 358 99 32 chr4 109080535 109081043 -75207619 + L2 LINE L2 2806 3278 -35 1742 133 6 49 chr4 109081150 109081474 -75207188 - L1P4 LINE L1 -381 5785 5476 3287 277 93 59 chr4 109081479 109081993 -75206669 - Charlie2b DNA MER1_type -747 2115 1620 1945 198 68 13 chr4 109081993 109082388 -75206274 - MER47B DNA MER2_type 0 418 2 3287 277 93 59 chr4 109082388 109083910 -75204752 - Charlie2b DNA MER1_type -1242 1620 9 2252 68 0 62 chr4 109084752 109085074 -75203588 - AluY SINE Alu -9 302 1 681 176 48 0 chr4 109085206 109085331 -75203331 - FLAM_A SINE Alu -1 132 2 324 0 0 0 chr4 109085363 109085399 -75203263 + (CA)n Simple_repeat Simple_repeat 1 36 0 329 333 122 20 chr4 109085427 109085682 -75202980 - L1ME LINE L1 -577 5821 5541 227 108 0 0 chr4 109085691 109085728 -75202934 - L1ME LINE L1 -881 5526 5490 308 289 115 39 chr4 109085741 109086001 -75202661 - L1ME LINE L1 -905 5477 5198 243 293 13 0 chr4 109086126 109086201 -75202461 - L1ME LINE L1 -1334 5048 4973 222 208 0 0 chr4 109086354 109086407 -75202255 + (TA)n Simple_repeat Simple_repeat 1 53 0 233 296 93 66 chr4 109087169 109087395 -75201267 - HAL1 LINE L1 -867 1640 1409 317 238 48 89 chr4 109087400 109087568 -75201094 - L1ME LINE L1 -4957 1427 1267 265 338 25 5 chr4 109087613 109087811 -75200851 - L1ME LINE L1 -5014 1358 1157 460 294 190 45 chr4 109087895 109088358 -75200304 - L1ME LINE L1 -5492 880 351 1214 62 0 0 chr4 109089744 109089890 -75198772 + AluSg/x SINE Alu 155 300 -10 563 350 142 21 chr4 109090851 109091385 -75197277 - L2 LINE L2 -940 2374 1776 500 217 63 111 chr4 109091408 109091615 -75197047 - MIR SINE MIR 0 262 66 6557 129 14 12 chr4 109092038 109093437 -75195225 - L1MA3 LINE L1 0 6305 4905 230 346 88 22 chr4 109093890 109094026 -75194636 + MIR SINE MIR 59 203 -59 1826 122 31 6 chr4 109094104 109094423 -75194239 - L1MA3 LINE L1 -5 6300 5974 352 357 9 0 chr4 109096284 109096396 -75192266 + L2 LINE L2 3192 3304 -9 211 200 0 0 chr4 109097149 109097194 -75191468 + GA-rich Low_complexity Low_complexity 2 46 0 233 321 50 57 chr4 109097587 109097727 -75190935 + L2 LINE L2 3134 3272 0 2238 30 0 11 chr4 109097765 109098062 -75190600 + AluY SINE Alu 16 309 0 393 223 53 11 chr4 109099107 109099201 -75189461 - L2 LINE L2 0 3313 3216 661 269 71 0 chr4 109099249 109099446 -75189216 - MIR SINE MIR -49 213 3 25 0 0 0 chr4 109102224 109102249 -75186413 + AT_rich Low_complexity Low_complexity 1 25 0 486 316 26 21 chr4 109102884 109103077 -75185585 + L2 LINE L2 2563 2756 -558 814 283 27 20 chr4 109103640 109103902 -75184760 - MIR SINE MIR 0 262 1 209 333 25 0 chr4 109108996 109109077 -75179585 - MIR3 SINE MIR -10 198 116 744 288 79 17 chr4 109109104 109109344 -75179318 + MIR SINE MIR 8 262 0 224 200 0 33 chr4 109109600 109109660 -75179002 + (TA)n Simple_repeat Simple_repeat 1 58 0 196 153 0 34 chr4 109109681 109109740 -75178922 + (TA)n Simple_repeat Simple_repeat 1 57 0 378 288 76 17 chr4 109110064 109110182 -75178480 + MIR SINE MIR 15 139 -123 2294 4 0 0 chr4 109110182 109110441 -75178221 + L1PA2 LINE L1 5894 6152 -3 195 69 0 0 chr4 109110446 109110475 -75178187 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr4 109110595 109110616 -75178046 + AT_rich Low_complexity Low_complexity 1 21 0 333 342 98 34 chr4 109110675 109110941 -75177721 - L1ME LINE L1 -339 5782 5500 2596 239 60 27 chr4 109110943 109111851 -75176811 - L1ME3 LINE L1 0 6162 5237 287 273 68 11 chr4 109111885 109111973 -75176689 + MIR SINE MIR 5 97 -165 363 127 13 25 chr4 109111991 109112070 -75176592 + (TA)n Simple_repeat Simple_repeat 1 78 0 1657 246 70 42 chr4 109112201 109112887 -75175775 + L1M4 LINE L1 4282 4986 -1160 453 347 83 30 chr4 109113148 109113546 -75175116 - L1ME LINE L1 -954 5192 4774 225 0 0 0 chr4 109114113 109114138 -75174524 + (A)n Simple_repeat Simple_repeat 1 25 0 2083 97 29 0 chr4 109114146 109114424 -75174238 + AluSc SINE Alu 1 286 -23 917 193 0 0 chr4 109115046 109115207 -75173455 + FRAM SINE Alu 1 161 -5 270 56 0 0 chr4 109115251 109115287 -75173375 + (TATATG)n Simple_repeat Simple_repeat 1 36 0 217 300 206 6 chr4 109115608 109115792 -75172870 + MIR SINE MIR 42 261 -1 521 282 45 16 chr4 109115923 109116168 -75172494 + Tigger8 DNA MER2_type 146 397 -269 252 366 65 21 chr4 109116254 109116440 -75172222 - L2 LINE L2 -359 2955 2762 218 295 16 0 chr4 109116662 109116723 -75171939 + L2 LINE L2 3192 3253 -19 283 318 51 23 chr4 109117393 109117509 -75171153 - MIR SINE MIR -5 257 146 207 0 0 0 chr4 109117509 109117532 -75171130 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 408 40 0 0 chr4 109117531 109117581 -75171081 + (TA)n Simple_repeat Simple_repeat 1 50 0 283 318 51 23 chr4 109117532 109117640 -75171022 - MIR SINE MIR -116 146 77 22 35 0 0 chr4 109118929 109118958 -75169704 + AT_rich Low_complexity Low_complexity 1 29 0 281 333 10 0 chr4 109119000 109119099 -75169563 - MIR SINE MIR -7 255 156 236 274 0 32 chr4 109119177 109119239 -75169423 - L2 LINE L2 -62 3251 3192 1026 79 0 0 chr4 109119790 109119929 -75168733 + L1PA4 LINE L1 5 143 -6003 25047 31 0 2 chr4 109119929 109123735 -75164927 + L1PA4 LINE L1 2353 6155 0 3529 128 0 35 chr4 109123864 109124412 -75164250 - MER1A DNA MER1_type 0 529 1 2065 164 11 3 chr4 109124777 109125144 -75163518 - L1PB1 LINE L1 -8 6143 5774 25 51 0 0 chr4 109125144 109125183 -75163479 + AT_rich Low_complexity Low_complexity 1 39 0 199 333 14 0 chr4 109125295 109125364 -75163298 + L2 LINE L2 3244 3313 0 286 320 13 0 chr4 109125665 109125743 -75162919 - MIR3 SINE MIR -115 93 15 22 0 0 0 chr4 109126720 109126742 -75161920 + AT_rich Low_complexity Low_complexity 1 22 0 382 215 74 25 chr4 109127283 109127404 -75161258 - L1MB7 LINE L1 -9 6175 6049 670 172 104 37 chr4 109128334 109128460 -75160202 - MER5B DNA MER1_type 0 178 37 1180 227 24 61 chr4 109128460 109128839 -75159823 + MLT1A1 LTR MaLR 1 365 0 670 172 104 37 chr4 109128839 109128875 -75159787 - MER5B DNA MER1_type -141 37 5 183 100 0 0 chr4 109129508 109129538 -75159124 + (T)n Simple_repeat Simple_repeat 1 30 0 21 57 0 0 chr4 109129737 109129772 -75158890 + AT_rich Low_complexity Low_complexity 1 35 0 270 0 0 0 chr4 109130180 109130210 -75158452 + (TG)n Simple_repeat Simple_repeat 2 31 0 1412 230 37 3 chr4 109132085 109132385 -75156277 + Tigger5 DNA MER2_type 1 310 -2013 311 222 25 25 chr4 109132368 109132449 -75156213 + Tigger5 DNA MER2_type 2242 2322 -1 * 952 183 0 32 chr4 109132687 109132873 -75155789 + L1MCb LINE L1 533 712 -5852 2577 176 129 12 chr4 109132874 109133364 -75155298 - MLT2B3 LTR ERVL 0 554 8 1589 217 96 14 chr4 109133371 109133809 -75154853 + L1MCb LINE L1 499 972 -5073 250 298 26 26 chr4 109134334 109134448 -75154214 - MIR SINE MIR -44 218 105 799 274 117 68 chr4 109137077 109137354 -75151308 + MLT1H LTR MaLR 71 380 -169 2259 130 28 0 chr4 109137354 109137708 -75150954 + THE1B LTR MaLR 1 364 0 799 274 117 68 chr4 109137708 109137883 -75150779 + MLT1H LTR MaLR 380 545 -4 244 390 0 0 chr4 109138119 109138219 -75150443 + MLT-int LTR MaLR 427 526 -1209 926 202 64 28 chr4 109138366 109138784 -75149878 - MER76 LTR ERV 0 688 204 1101 187 37 33 chr4 109138787 109139028 -75149634 + MLT1A1 LTR MaLR 124 365 0 22 0 0 0 chr4 109140168 109140190 -75148472 + AT_rich Low_complexity Low_complexity 1 22 0 284 379 33 7 chr4 109140210 109140363 -75148299 - MIR3 SINE MIR -7 201 45 1245 151 29 25 chr4 109142667 109142905 -75145757 + MER50 LTR ERV1 2 240 -494 * 1622 187 0 14 chr4 109142888 109143182 -75145480 + MER50 LTR ERV1 433 722 -12 1813 119 61 24 chr4 109143563 109143856 -75144806 + AluSx SINE Alu 1 304 -8 544 211 60 8 chr4 109143891 109144024 -75144638 + MLT1H1 LTR MaLR 73 212 -337 612 305 85 5 chr4 109144071 109144271 -75144391 + MLT1H1 LTR MaLR 325 540 -15 186 236 0 0 chr4 109144806 109144861 -75143801 + GA-rich Low_complexity Low_complexity 4 58 0 226 326 57 21 chr4 109144897 109145038 -75143624 - MER103 DNA DNA -20 146 1 452 216 34 91 chr4 109145073 109145249 -75143413 - MER112 DNA MER1_type -6 254 89 300 27 0 0 chr4 109145252 109145289 -75143373 + (TG)n Simple_repeat Simple_repeat 2 38 0 24 67 0 0 chr4 109145328 109145373 -75143289 + AT_rich Low_complexity Low_complexity 1 45 0 26 93 0 0 chr4 109145420 109145495 -75143167 + AT_rich Low_complexity Low_complexity 1 75 0 460 227 25 8 chr4 109145755 109145874 -75142788 - MIR SINE MIR -25 237 117 1239 261 62 35 chr4 109146438 109146986 -75141676 + L1MC4a LINE L1 5318 5880 -1928 282 29 0 0 chr4 109147487 109147522 -75141140 + (TTA)n Simple_repeat Simple_repeat 3 37 0 232 299 145 69 chr4 109149339 109149643 -75139019 + L3 LINE CR1 455 781 -796 25 0 0 0 chr4 109149782 109149807 -75138855 + AT_rich Low_complexity Low_complexity 1 25 0 669 293 50 25 chr4 109150471 109150710 -75137952 + MIR SINE MIR 18 262 0 22 35 0 0 chr4 109152377 109152406 -75136256 + AT_rich Low_complexity Low_complexity 1 29 0 685 250 118 38 chr4 109152789 109153187 -75135475 - L2 LINE L2 -2 3311 2581 468 72 0 0 chr4 109154237 109154306 -75134356 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 211 398 29 18 chr4 109154314 109154485 -75134177 - L2 LINE L2 -558 2756 2584 25 31 0 0 chr4 109156149 109156181 -75132481 + AT_rich Low_complexity Low_complexity 1 32 0 26 50 0 0 chr4 109156908 109156948 -75131714 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr4 109158172 109158200 -75130462 + AT_rich Low_complexity Low_complexity 1 28 0 913 125 0 15 chr4 109158282 109158418 -75130244 - FLAM_C SINE Alu -9 134 1 21 36 0 0 chr4 109158596 109158624 -75130038 + AT_rich Low_complexity Low_complexity 1 28 0 335 290 159 37 chr4 109158908 109159122 -75129540 + MIR SINE MIR 20 259 -3 324 340 139 0 chr4 109159412 109159556 -75129106 + MIR3 SINE MIR 17 180 -28 676 128 27 14 chr4 109159808 109159956 -75128706 + GA-rich Low_complexity Low_complexity 3 152 0 180 77 0 0 chr4 109160207 109160233 -75128429 + (CATATA)n Simple_repeat Simple_repeat 2 27 0 * 372 119 0 0 chr4 109160232 109160291 -75128371 + (TG)n Simple_repeat Simple_repeat 2 60 0 23 0 0 0 chr4 109162117 109162140 -75126522 + AT_rich Low_complexity Low_complexity 1 23 0 211 240 0 67 chr4 109162160 109162235 -75126427 - MIR SINE MIR -41 221 152 493 272 43 43 chr4 109162235 109162419 -75126243 - MIR SINE MIR -78 184 1 337 311 87 37 chr4 109162423 109162744 -75125918 - L1M4 LINE L1 -977 5169 4833 510 304 126 17 chr4 109163343 109163573 -75125089 - MIR SINE MIR -2 260 6 468 364 24 47 chr4 109163571 109163909 -75124753 - L2 LINE L2 -93 3179 2850 * 255 347 42 48 chr4 109164197 109164364 -75124298 - MIR SINE MIR -41 221 56 418 255 101 42 chr4 109165188 109165402 -75123260 - MIR SINE MIR -5 257 22 2213 169 60 2 chr4 109165471 109165874 -75122788 - MSTB LTR MaLR 0 426 1 26 30 0 0 chr4 109166288 109166321 -75122341 + AT_rich Low_complexity Low_complexity 1 33 0 2063 153 13 29 chr4 109166376 109166754 -75121908 + THE1C LTR MaLR 4 375 0 758 266 19 19 chr4 109167588 109167802 -75120860 - L1ME LINE L1 -5391 679 466 3802 173 40 73 chr4 109167845 109169515 -75119147 - L1PB4 LINE L1 -40 6116 4511 419 83 28 14 chr4 109169515 109169587 -75119075 - THE1C LTR MaLR 0 428 356 1951 29 4 0 chr4 109169587 109169833 -75118829 - L1PA4 LINE L1 -626 5529 5283 5078 36 0 0 chr4 109169833 109170435 -75118227 + L1PA4 LINE L1 5548 6152 -3 1524 143 54 44 chr4 109170444 109170759 -75117903 - THE1C LTR MaLR -57 318 1 1505 226 7 22 chr4 109170760 109171167 -75117495 - L1PB4 LINE L1 -1632 4514 4114 593 208 96 0 chr4 109171171 109171296 -75117366 - L1ME LINE L1 -5611 459 323 * 1457 132 128 125 chr4 109171294 109171741 -75116921 - L1MC2 LINE L1 -19 6325 5878 3693 68 4 2 chr4 109171753 109172236 -75116426 - L1PA7 LINE L1 -13 6141 5658 1053 87 0 0 chr4 109172236 109172374 -75116288 + L1P LINE L1 4057 4194 -1952 638 310 10 37 chr4 109172373 109172670 -75115992 - L1ME LINE L1 -5738 332 44 * 419 304 26 9 chr4 109172827 109172942 -75115720 + L2 LINE L2 3148 3264 -8 908 198 33 6 chr4 109172964 109173146 -75115516 + L1MA6 LINE L1 6082 6268 -32 205 341 126 30 chr4 109173179 109173314 -75115348 + MIR SINE MIR 5 152 -110 1593 182 16 29 chr4 109173563 109173871 -75114791 + AluJb SINE Alu 1 304 -8 216 250 175 33 chr4 109174159 109174279 -75114383 - MIR SINE MIR -73 189 53 2342 62 3 0 chr4 109174294 109174582 -75114080 + AluY SINE Alu 13 301 -10 21 36 0 0 chr4 109174802 109174830 -75113832 + AT_rich Low_complexity Low_complexity 1 28 0 314 363 44 77 chr4 109178032 109178280 -75110382 - L2 LINE L2 -5 3267 3028 245 402 62 0 chr4 109178463 109178575 -75110087 + L2 LINE L2 3137 3255 -17 261 279 16 0 chr4 109178911 109178972 -75109690 - L2 LINE L2 -2 3270 3209 321 268 108 70 chr4 109179082 109179295 -75109367 - L1MEd LINE L1 -4898 1221 1001 377 329 58 41 chr4 109179437 109179729 -75108933 - L1MEd LINE L1 -5168 951 655 400 263 120 0 chr4 109179761 109179936 -75108726 - L1MEd LINE L1 -5922 197 2 1058 223 37 40 chr4 109180404 109180677 -75107985 + L1MCa LINE L1 28 299 -6127 3084 164 198 11 chr4 109180677 109181581 -75107081 + L1MCa LINE L1 1335 2407 -4019 1868 178 51 6 chr4 109181582 109181937 -75106725 + THE1C LTR MaLR 1 371 -4 9232 133 50 11 chr4 109181941 109183462 -75105200 + THE1C-int LTR MaLR 1 1580 0 1931 179 5 18 chr4 109183462 109183842 -75104820 + THE1C LTR MaLR 1 375 0 9307 254 25 13 chr4 109183847 109186866 -75101796 + L1MCa LINE L1 2409 5465 -961 1244 230 124 42 chr4 109186879 109187283 -75101379 - MLT2B1 LTR ERVL 0 520 84 1236 188 65 65 chr4 109187283 109187576 -75101086 + AluJb SINE Alu 1 293 -19 439 173 18 0 chr4 109187576 109187686 -75100976 + G-rich Low_complexity Low_complexity 2 113 0 457 207 0 0 chr4 109187690 109187777 -75100885 - MLT2B1 LTR ERVL -432 88 2 28674 188 41 30 chr4 109187778 109188683 -75099979 - ERVL-B1 LTR ERVL -7 5757 4864 2351 67 6 19 chr4 109188683 109188998 -75099664 - AluY SINE Alu 0 311 1 28674 188 41 30 chr4 109188998 109189437 -75099225 - ERVL-B1 LTR ERVL -900 4864 4431 1251 244 36 30 chr4 109189437 109189798 -75098864 + MLT1A1 LTR MaLR 1 363 -2 28674 188 41 30 chr4 109189798 109194143 -75094519 - ERVL-B1 LTR ERVL -1333 4431 3 279 150 0 17 chr4 109194146 109194206 -75094456 - MLT2B1 LTR ERVL 0 520 462 376 47 47 47 chr4 109194207 109194292 -75094370 + (TAGA)n Simple_repeat Simple_repeat 3 87 0 694 239 19 7 chr4 109194736 109194891 -75093771 - MLT2B1 LTR ERVL -42 478 322 3033 158 47 8 chr4 109194891 109195510 -75093152 + L1MC1 LINE L1 5690 6332 -1 30387 119 12 58 chr4 109195537 109201992 -75086670 - L1PA7 LINE L1 -3 6151 1 1563 194 0 44 chr4 109202207 109202527 -75086135 - AluJo SINE Alu -6 306 1 2152 145 85 15 chr4 109203061 109203460 -75085202 + MSTA LTR MaLR 1 427 -1 2887 142 30 0 chr4 109203671 109204172 -75084490 - L1MA6 LINE L1 0 7719 7204 588 110 130 0 chr4 109204190 109204290 -75084372 + L1M2 LINE L1 5593 5705 -595 184 98 24 24 chr4 109204547 109204588 -75084074 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 14325 191 26 20 chr4 109204596 109208144 -75080518 - L1MA6 LINE L1 -855 6710 3140 24 0 0 0 chr4 109208311 109208335 -75080327 + AT_rich Low_complexity Low_complexity 1 24 0 672 293 74 4 chr4 109208762 109209032 -75079630 + L1MCb LINE L1 3 291 -5754 1524 216 98 25 chr4 109209050 109209107 -75079555 - MER70A LTR ERVL 0 472 421 381 43 0 0 chr4 109209107 109209154 -75079508 + (CA)n Simple_repeat Simple_repeat 2 48 0 1524 216 98 25 chr4 109209154 109209453 -75079209 - MER70A LTR ERVL -51 421 90 970 194 0 6 chr4 109209452 109209612 -75079050 - MER70B LTR ERVL -419 159 1 * 1323 244 13 35 chr4 109209621 109210071 -75078591 + L1MCb LINE L1 313 897 -5148 7970 178 125 16 chr4 109210073 109211655 -75077007 + MER52A LTR ERV1 1 1755 0 996 216 39 8 chr4 109211657 109211912 -75076750 + L1MCb LINE L1 899 1161 -4884 464 244 107 5 chr4 109211901 109212106 -75076556 + L1MB5 LINE L1 5044 5269 -877 * 43672 42 1 3 chr4 109212115 109218286 -75070376 + L1PA3 LINE L1 9 6172 0 4315 211 10 3 chr4 109218336 109219235 -75069427 + L1MB5 LINE L1 5261 6165 -9 1032 206 82 57 chr4 109219233 109220118 -75068544 + L1MCb LINE L1 1171 2284 -4280 * 296 292 0 62 chr4 109221687 109221831 -75066831 - HAL1 LINE L1 -4 2503 2369 1896 306 135 44 chr4 109221923 109223941 -75064721 - HAL1 LINE L1 -283 2224 23 301 229 0 24 chr4 109225817 109225900 -75062762 + (TA)n Simple_repeat Simple_repeat 1 81 0 201 121 0 0 chr4 109225900 109225933 -75062729 + (TG)n Simple_repeat Simple_repeat 2 34 0 11755 193 44 11 chr4 109226589 109226673 -75061989 + L1MA1 LINE L1 16 96 -7469 252 0 0 0 chr4 109226673 109226701 -75061961 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 11755 193 44 11 chr4 109226701 109226981 -75061681 + L1MA1 LINE L1 96 365 -7200 2753 16 0 0 chr4 109226981 109227284 -75061378 - AluYa5 SINE Alu -8 303 1 11755 193 44 11 chr4 109227284 109229185 -75059477 + L1MA1 LINE L1 365 2356 -5209 1321 111 6 0 chr4 109229185 109229365 -75059297 - AluSg/x SINE Alu -14 298 118 286 82 143 0 chr4 109229366 109229415 -75059247 + L1MA1 LINE L1 3363 3418 -4147 1695 140 20 0 chr4 109229432 109229760 -75058902 + L1MA1 LINE L1 3383 3731 -3834 1205 97 0 0 chr4 109229779 109229934 -75058728 + AluY SINE Alu 151 305 -6 13167 159 47 35 chr4 109229935 109232255 -75056407 + L1MA1 LINE L1 3741 6137 -1584 2176 79 7 0 chr4 109232255 109232593 -75056069 - AluY SINE Alu 0 340 1 13167 159 47 35 chr4 109232593 109234193 -75054469 + L1MA1 LINE L1 6137 7715 -6 307 108 0 46 chr4 109234219 109234284 -75054378 - L1PA16 LINE L1 0 6166 6105 398 291 74 7 chr4 109235607 109235755 -75052907 + MIR SINE MIR 102 259 -3 909 199 86 152 chr4 109236030 109236451 -75052211 - MLT1A1 LTR MaLR 0 365 4 644 257 75 9 chr4 109236520 109236799 -75051863 - MLT1I LTR MaLR -10 399 70 216 390 35 14 chr4 109237000 109237141 -75051521 + MIR3 SINE MIR 54 197 -11 1805 194 101 38 chr4 109237290 109237765 -75050897 + MLT1D LTR MaLR 1 505 0 22 35 0 0 chr4 109238455 109238484 -75050178 + AT_rich Low_complexity Low_complexity 1 29 0 2082 191 38 32 chr4 109238543 109239045 -75049617 - MLT1D LTR MaLR 0 505 1 409 389 43 5 chr4 109239437 109239622 -75049040 - L2 LINE L2 -1 3271 3080 561 281 94 18 chr4 109240282 109240610 -75048052 - L1ME4a LINE L1 -161 5960 5608 2742 23 0 0 chr4 109240745 109241051 -75047611 - AluY SINE Alu -5 306 1 474 262 26 67 chr4 109241098 109241182 -75047480 + MLT1E LTR MaLR 14 100 -467 839 229 62 119 chr4 109241182 109241602 -75047060 - MSTD LTR MaLR 0 396 1 474 262 26 67 chr4 109241602 109241719 -75046943 + MLT1E LTR MaLR 100 212 -355 213 162 44 15 chr4 109241721 109241789 -75046873 + CT-rich Low_complexity Low_complexity 4 73 0 325 262 127 53 chr4 109241941 109242262 -75046400 - L1ME4a LINE L1 -813 5333 5114 309 290 91 6 chr4 109242349 109242525 -75046137 - L1ME4a LINE L1 -1833 4313 4123 1114 134 0 0 chr4 109243123 109243287 -75045375 + L1P4 LINE L1 5435 5598 -568 * 2732 130 5 0 chr4 109243281 109243703 -75044959 + L1PA16 LINE L1 5514 5937 -229 4094 15 8 2 chr4 109243703 109244181 -75044481 + L1PA2 LINE L1 5671 6151 -4 1441 159 4 0 chr4 109244181 109244410 -75044252 + L1PA16 LINE L1 5925 6157 -9 324 277 39 40 chr4 109244925 109245168 -75043494 + MER41B LTR ERV1 50 425 -210 333 0 0 0 chr4 109245320 109245357 -75043305 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 6280 57 3 0 chr4 109245357 109246135 -75042527 - L1PA7 LINE L1 -13 6141 5362 1923 92 92 0 chr4 109246949 109247220 -75041442 - AluSg1 SINE Alu -13 296 1 574 335 84 31 chr4 109247699 109248021 -75040641 + L2 LINE L2 2975 3313 0 1700 119 0 4 chr4 109248050 109248286 -75040376 + AluSg/x SINE Alu 72 306 -6 423 100 25 12 chr4 109250658 109250738 -75037924 + (GGAA)n Simple_repeat Simple_repeat 3 83 0 23 54 0 0 chr4 109252263 109252300 -75036362 + AT_rich Low_complexity Low_complexity 1 37 0 183 204 0 0 chr4 109253081 109253125 -75035537 + (ATTTG)n Simple_repeat Simple_repeat 2 45 0 617 267 147 22 chr4 109253503 109253967 -75034695 - L1M4 LINE L1 -1316 4830 4309 440 330 58 19 chr4 109254008 109254269 -75034393 - L1M4 LINE L1 -1953 4193 3923 339 291 61 20 chr4 109254270 109254418 -75034244 - L1M4 LINE L1 -2258 3888 3735 657 94 0 0 chr4 109254539 109254624 -75034038 + MSTB1 LTR MaLR 1 85 -347 1015 223 55 92 chr4 109254625 109255028 -75033634 - L1MC3 LINE L1 -1202 6583 6196 * 2940 239 29 19 chr4 109255018 109255949 -75032713 - L1M4 LINE L1 -2216 3930 2991 856 191 180 94 chr4 109255976 109256306 -75032356 - MSTD LTR MaLR -8 388 1 275 292 0 14 chr4 109256469 109256541 -75032121 - L1MDb LINE L1 -6118 291 221 1899 173 126 8 chr4 109256929 109257311 -75031351 + MSTA LTR MaLR 1 427 -1 29 0 0 0 chr4 109257598 109257627 -75031035 + AT_rich Low_complexity Low_complexity 1 29 0 294 328 26 21 chr4 109257715 109257904 -75030758 - L1MC3 LINE L1 -1907 5901 5712 1219 234 56 25 chr4 109259806 109260195 -75028467 + L1ME2 LINE L1 5770 6178 0 25 0 0 0 chr4 109260283 109260308 -75028354 + AT_rich Low_complexity Low_complexity 1 25 0 903 208 98 98 chr4 109260699 109260844 -75027818 - Zaphod DNA AcHobo -9 4022 3878 2222 82 0 54 chr4 109260844 109261175 -75027487 + AluSq SINE Alu 1 313 0 903 208 98 98 chr4 109261175 109261457 -75027205 - Zaphod DNA AcHobo -152 3879 3595 * 1696 245 124 41 chr4 109261455 109261654 -75027008 - Zaphod DNA AcHobo -3041 990 809 2208 93 7 3 chr4 109261654 109261954 -75026708 - AluSq SINE Alu -12 301 1 1696 245 124 41 chr4 109261954 109262602 -75026060 - Zaphod DNA AcHobo -3222 809 73 27 29 0 0 chr4 109262640 109262674 -75025988 + AT_rich Low_complexity Low_complexity 1 34 0 243 196 22 71 chr4 109262681 109262910 -75025752 + (TATAA)n Simple_repeat Simple_repeat 1 217 0 306 297 33 22 chr4 109262940 109263031 -75025631 - Zaphod DNA AcHobo -3939 92 1 4672 192 79 23 chr4 109263277 109264630 -75024032 - L1MC1 LINE L1 -1 6612 5175 18629 72 6 0 chr4 109264633 109267053 -75021609 + L1P LINE L1 1 2435 -3711 27488 38 2 0 chr4 109267153 109271332 -75017330 + L1PA4 LINE L1 1968 6155 0 8335 248 40 18 chr4 109271337 109272409 -75016253 - L1MC1 LINE L1 -1241 5185 4138 2124 132 16 31 chr4 109272409 109272580 -75016082 - L1MA3 LINE L1 0 6305 6133 1968 163 0 0 chr4 109272580 109272880 -75015782 - AluJb SINE Alu -11 301 2 2124 132 16 31 chr4 109272880 109273095 -75015567 - L1MA3 LINE L1 -172 6133 5925 8335 248 40 18 chr4 109273095 109273645 -75015017 - L1MC1 LINE L1 -2288 4138 3602 2093 120 7 16 chr4 109273645 109273953 -75014709 - AluSx SINE Alu -7 305 1 8335 248 40 18 chr4 109273953 109274831 -75013831 - L1MC1 LINE L1 -2824 3602 2615 2035 148 0 0 chr4 109274831 109275135 -75013527 - AluSx SINE Alu -8 304 1 8335 248 40 18 chr4 109275135 109275366 -75013296 - L1MC1 LINE L1 -3811 2615 2391 7244 158 78 69 chr4 109275376 109277562 -75011100 - L1MC1 LINE L1 -4085 2341 32 1811 89 4 0 chr4 109277562 109277809 -75010853 - L1PB1 LINE L1 0 6151 5904 7244 158 78 69 chr4 109277809 109277837 -75010825 - L1MC1 LINE L1 -6394 32 6 3144 166 43 12 chr4 109278360 109278943 -75009719 + MER7C DNA MER2_type 1 601 -1 655 216 23 50 chr4 109279639 109279816 -75008846 - MER5B DNA MER1_type 0 178 12 864 173 0 12 chr4 109280036 109280209 -75008453 - L1MA7 LINE L1 0 6291 6121 212 83 0 28 chr4 109280276 109280312 -75008350 + (ATG)n Simple_repeat Simple_repeat 2 36 0 2225 161 33 23 chr4 109280380 109280808 -75007854 - Tigger2a DNA MER2_type -1 433 2 387 0 0 0 chr4 109280810 109280853 -75007809 + (CA)n Simple_repeat Simple_repeat 2 44 0 27 29 0 0 chr4 109281085 109281119 -75007543 + AT_rich Low_complexity Low_complexity 1 34 0 1607 101 0 5 chr4 109281908 109282116 -75006546 + AluSp SINE Alu 25 231 -82 1851 217 64 66 chr4 109282375 109282891 -75005771 + MLT2B1 LTR ERVL 6 520 0 509 284 101 68 chr4 109283005 109283371 -75005291 - MLT1J1 LTR MaLR 0 446 69 288 225 178 8 chr4 109285105 109285234 -75003428 - L1MA10 LINE L1 -4 6330 6180 25782 133 14 24 chr4 109285277 109291732 -74996930 - L1PA8A LINE L1 0 6446 3 5966 119 11 5 chr4 109292144 109293899 -74994763 - L1PA15 LINE L1 -2 6163 4404 982 290 46 13 chr4 109294467 109294770 -74993892 + MLT1I LTR MaLR 1 313 -96 291 146 0 0 chr4 109295208 109295263 -74993399 + (CA)n Simple_repeat Simple_repeat 2 56 0 1892 140 38 0 chr4 109295794 109296087 -74992575 + AluSx SINE Alu 1 304 -8 250 256 35 23 chr4 109296366 109296452 -74992210 + MER5A DNA MER1_type 101 187 -2 694 260 73 41 chr4 109296656 109296875 -74991787 - MIR SINE MIR -36 226 1 659 244 19 19 chr4 109297019 109297175 -74991487 + MER5B DNA MER1_type 1 156 -22 21 0 0 0 chr4 109297204 109297225 -74991437 + AT_rich Low_complexity Low_complexity 1 21 0 252 250 80 60 chr4 109299631 109299731 -74988931 - MIR SINE MIR -90 172 71 207 0 0 0 chr4 109300595 109300618 -74988044 + (A)n Simple_repeat Simple_repeat 1 23 0 582 259 98 15 chr4 109302649 109302854 -74985808 + MIR SINE MIR 41 262 0 376 303 65 106 chr4 109303127 109303704 -74984958 - L2 LINE L2 -648 2666 2112 2095 123 3 0 chr4 109303704 109303996 -74984666 + AluSg SINE Alu 1 293 -17 376 303 65 106 chr4 109303996 109304013 -74984649 - L2 LINE L2 -1202 2112 2096 358 336 115 72 chr4 109304620 109304995 -74983667 + L2 LINE L2 2877 3267 -5 2486 60 0 22 chr4 109305290 109305604 -74983058 + AluY SINE Alu 1 307 -4 3460 24 3 0 chr4 109305640 109306217 -74982445 - L1PA2 LINE L1 -499 5656 5077 4606 15 0 0 chr4 109306217 109306736 -74981926 + L1PA2 LINE L1 5630 6154 -1 22 0 0 0 chr4 109306764 109306786 -74981876 + AT_rich Low_complexity Low_complexity 1 22 0 1043 214 0 11 chr4 109307442 109307629 -74981033 + AluJo SINE Alu 1 185 -127 14545 162 41 9 chr4 109307840 109312700 -74975962 - L1MA3 LINE L1 -2 7722 2697 2378 110 8 8 chr4 109312700 109313054 -74975608 - THE1A LTR MaLR 0 355 2 11475 104 4 1 chr4 109313055 109314627 -74974035 - THE1A-int LTR MaLR 0 1580 4 1755 140 11 11 chr4 109314702 109314988 -74973674 - THE1A LTR MaLR -69 286 1 2337 65 0 33 chr4 109315005 109315312 -74973350 - AluY SINE Alu -14 297 1 16926 154 9 5 chr4 109315312 109316263 -74972399 - L1MA3 LINE L1 -4864 2701 1755 279 0 0 0 chr4 109316263 109316294 -74972368 + (TG)n Simple_repeat Simple_repeat 2 32 0 16926 154 9 5 chr4 109316294 109318022 -74970640 - L1MA3 LINE L1 -5810 1755 12 26 0 0 0 chr4 109318023 109318049 -74970613 + AT_rich Low_complexity Low_complexity 1 26 0 21 100 0 0 chr4 109318372 109318442 -74970220 + AT_rich Low_complexity Low_complexity 1 70 0 230 308 47 0 chr4 109318678 109318785 -74969877 - HAL1 LINE L1 -698 1809 1698 331 303 56 7 chr4 109318795 109318937 -74969725 - HERVL LTR ERVL -3736 1918 1770 250 137 68 0 chr4 109319192 109319265 -74969397 + (TA)n Simple_repeat Simple_repeat 1 78 0 204 324 132 11 chr4 109320211 109320393 -74968269 - L2 LINE L2 -4 3309 3106 1992 118 7 17 chr4 109320667 109320986 -74967676 - AluSq SINE Alu 0 313 1 236 341 76 47 chr4 109321021 109321232 -74967430 + L2 LINE L2 2283 2499 -815 220 302 0 0 chr4 109325181 109325244 -74963418 - L2 LINE L2 0 3313 3251 550 299 71 19 chr4 109326798 109327009 -74961653 + L3 LINE CR1 1065 1286 -291 21 0 0 0 chr4 109327081 109327102 -74961560 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr4 109328212 109328235 -74960427 + (CA)n Simple_repeat Simple_repeat 1 23 0 23 33 0 0 chr4 109331263 109331293 -74957369 + AT_rich Low_complexity Low_complexity 1 30 0 608 304 0 0 chr4 109332559 109332707 -74955955 + MIR SINE MIR 6 153 -109 1051 237 23 8 chr4 109332845 109333102 -74955560 - MIR SINE MIR 0 262 2 266 264 85 63 chr4 109334346 109334512 -74954150 - MLT1H1 LTR MaLR 0 555 385 360 278 43 62 chr4 109334677 109334839 -74953823 - MLT1H1 LTR MaLR -389 166 8 254 237 25 51 chr4 109334846 109334964 -74953698 - MLT1H1-int LTR MaLR -15 1356 1242 532 222 0 28 chr4 109335621 109335729 -74952933 + MER58C DNA MER1_type 1 105 -110 4121 208 16 35 chr4 109335740 109337438 -74951224 + L1MB5 LINE L1 4449 6115 -59 398 241 0 0 chr4 109337473 109337560 -74951102 + MER58C DNA MER1_type 108 194 -21 432 0 0 0 chr4 109337987 109338035 -74950627 + (TG)n Simple_repeat Simple_repeat 2 49 0 617 270 30 102 chr4 109338111 109338517 -74950145 - MLT1H1 LTR MaLR -184 371 1 287 358 51 37 chr4 109338666 109338766 -74949896 - L2 LINE L2 -191 3081 2984 2056 131 13 66 chr4 109338766 109339162 -74949500 + THE1C LTR MaLR 1 375 0 287 358 51 37 chr4 109339162 109339276 -74949386 - L2 LINE L2 -288 2984 2864 314 223 39 48 chr4 109339453 109339556 -74949106 - MER103 DNA DNA -21 145 44 233 29 29 0 chr4 109339993 109340027 -74948635 + (TA)n Simple_repeat Simple_repeat 1 35 0 1677 158 32 7 chr4 109346136 109346441 -74942221 - AluJb SINE Alu 0 332 21 233 282 14 0 chr4 109348342 109348413 -74940249 - MIR3 SINE MIR -4 204 133 984 210 170 18 chr4 109350972 109351526 -74937136 + LTR50 LTR ERVL 1 770 -25 2607 201 9 9 chr4 109351562 109351817 -74936845 - L1MB7 LINE L1 -12 6172 5918 1319 238 65 11 chr4 109351817 109352187 -74936475 + MLT1B LTR MaLR 1 390 0 2607 201 9 9 chr4 109352187 109352469 -74936193 - L1MB7 LINE L1 -265 5919 5635 379 356 38 12 chr4 109353208 109353368 -74935294 + MIR3 SINE MIR 42 205 -3 248 221 76 48 chr4 109353999 109354144 -74934518 + Charlie7 DNA MER1_type 2458 2606 -6 242 193 34 34 chr4 109354255 109354343 -74934319 + (CAGAG)n Simple_repeat Simple_repeat 1 88 0 1824 145 7 3 chr4 109354704 109354993 -74933669 - AluJb SINE Alu -20 292 3 937 172 38 33 chr4 109355883 109356170 -74932492 - MER1B DNA MER1_type -1 338 1 22 0 0 0 chr4 109356402 109356424 -74932238 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 109357237 109357258 -74931404 + AT_rich Low_complexity Low_complexity 1 21 0 4932 301 76 34 chr4 109357417 109359776 -74928886 - L2 LINE L2 -553 2761 303 524 230 56 15 chr4 109359776 109359976 -74928686 + MER58 DNA MER1_type 1 2420 0 461 289 37 42 chr4 109360008 109360198 -74928464 - L2 LINE L2 -3087 227 39 347 321 57 7 chr4 109360360 109360500 -74928162 - MIR SINE MIR -69 193 47 584 332 103 15 chr4 109361773 109362044 -74926618 - MLT1I LTR MaLR -7 402 108 1756 88 11 4 chr4 109364813 109365074 -74923588 - L1MA2 LINE L1 0 6304 6042 713 271 18 45 chr4 109365161 109365382 -74923280 + MIR SINE MIR 6 220 -42 374 257 18 9 chr4 109365495 109365604 -74923058 + MIR SINE MIR 150 259 -3 30 27 0 0 chr4 109367808 109367845 -74920817 + AT_rich Low_complexity Low_complexity 1 37 0 1165 204 35 9 chr4 109367980 109368206 -74920456 + AluJo SINE Alu 1 232 -80 200 219 62 0 chr4 109368356 109368420 -74920242 + (CATATA)n Simple_repeat Simple_repeat 5 72 0 256 344 65 9 chr4 109368505 109368666 -74919996 - MER5B DNA MER1_type -1 188 8 2266 91 0 3 chr4 109368687 109368983 -74919679 - AluSc SINE Alu -14 295 1 1814 159 3 0 chr4 109369172 109369455 -74919207 + AluSx SINE Alu 3 286 -26 255 79 0 0 chr4 109369455 109369493 -74919169 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 200 227 0 0 chr4 109372933 109372977 -74915685 + T-rich Low_complexity Low_complexity 1 44 0 26 30 0 0 chr4 109373901 109373934 -74914728 + AT_rich Low_complexity Low_complexity 1 33 0 282 175 16 0 chr4 109375853 109375916 -74912746 + L1MA9 LINE L1 5963 6026 -286 405 129 0 0 chr4 109376060 109376130 -74912532 + (TA)n Simple_repeat Simple_repeat 1 70 0 23 33 0 0 chr4 109377750 109377780 -74910882 + AT_rich Low_complexity Low_complexity 1 30 0 544 308 40 5 chr4 109379567 109379765 -74908897 + L2 LINE L2 3098 3302 -11 3020 291 129 15 chr4 109380051 109380888 -74907774 + L2 LINE L2 1519 2259 -1054 222 37 0 0 chr4 109380888 109380915 -74907747 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 3020 291 129 15 chr4 109380915 109381433 -74907229 + L2 LINE L2 2259 3025 -288 421 287 17 0 chr4 109381442 109381557 -74907105 + L2 LINE L2 3175 3291 -22 345 225 0 0 chr4 109381562 109381651 -74907011 + GA-rich Low_complexity Low_complexity 1 89 0 26 30 0 0 chr4 109382867 109382900 -74905762 + AT_rich Low_complexity Low_complexity 1 33 0 27 0 0 0 chr4 109383064 109383091 -74905571 + AT_rich Low_complexity Low_complexity 1 27 0 302 285 51 109 chr4 109383669 109383925 -74904737 - L2 LINE L2 0 3313 3073 575 333 113 20 chr4 109384070 109384629 -74904033 - L2 LINE L2 -1235 2079 1469 400 331 18 18 chr4 109385105 109385268 -74903394 - MER5A DNA MER1_type -1 188 26 349 285 225 13 chr4 109385985 109386136 -74902526 + MER5A DNA MER1_type 7 189 0 181 402 0 9 chr4 109386141 109386248 -74902414 + L2 LINE L2 1837 1942 -1372 261 0 0 0 chr4 109386477 109386506 -74902156 + (CA)n Simple_repeat Simple_repeat 2 30 0 338 252 47 79 chr4 109386740 109386867 -74901795 + MLT1F LTR MaLR 62 184 -358 21 36 0 0 chr4 109387312 109387340 -74901322 + AT_rich Low_complexity Low_complexity 1 28 0 249 345 59 8 chr4 109387614 109387733 -74900929 + MIR SINE MIR 32 156 -106 300 254 0 0 chr4 109387755 109387810 -74900852 - L2 LINE L2 -63 3209 3155 187 278 0 0 chr4 109387842 109387878 -74900784 + L2 LINE L2 3211 3246 -26 388 230 50 20 chr4 109388219 109388319 -74900343 + MIR SINE MIR 86 188 -74 21 36 0 0 chr4 109389620 109389648 -74899014 + AT_rich Low_complexity Low_complexity 1 28 0 2040 82 31 20 chr4 109390006 109390298 -74898364 - AluSq SINE Alu -10 303 9 459 227 198 6 chr4 109391928 109392075 -74896587 - MER5A DNA MER1_type -6 183 4 185 341 0 24 chr4 109392629 109392714 -74895948 - MIR SINE MIR 0 262 180 247 450 52 19 chr4 109392984 109393348 -74895314 - L2 LINE L2 -337 2977 2602 1329 134 20 0 chr4 109393348 109393549 -74895113 + AluSg/x SINE Alu 91 295 -17 296 366 122 8 chr4 109393789 109394158 -74894504 - L2 LINE L2 -1146 2168 1758 896 230 237 10 chr4 109394984 109395388 -74893274 + LTR50 LTR ERVL 7 580 -215 21 36 0 0 chr4 109395472 109395500 -74893162 + AT_rich Low_complexity Low_complexity 1 28 0 192 295 9 67 chr4 109395547 109395652 -74893010 + L2 LINE L2 1672 1770 -1544 755 300 58 17 chr4 109395976 109396466 -74892196 - L1ME LINE L1 -565 5597 5087 1335 167 3 75 chr4 109396494 109396787 -74891875 + AluJo SINE Alu 41 312 0 530 311 216 5 chr4 109396825 109397205 -74891457 - L1ME LINE L1 -1085 5061 4602 239 281 9 61 chr4 109397221 109397335 -74891327 - MIR SINE MIR -46 216 109 189 267 67 17 chr4 109397857 109397917 -74890745 + L3b LINE CR1 1417 1479 -104 27 62 0 0 chr4 109398136 109398184 -74890478 + AT_rich Low_complexity Low_complexity 1 48 0 25 0 0 0 chr4 109398210 109398235 -74890427 + AT_rich Low_complexity Low_complexity 1 25 0 29 60 0 0 chr4 109398939 109398989 -74889673 + AT_rich Low_complexity Low_complexity 1 50 0 30 77 0 0 chr4 109401460 109401525 -74887137 + AT_rich Low_complexity Low_complexity 1 65 0 21 0 0 0 chr4 109404120 109404141 -74884521 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr4 109405747 109405774 -74882888 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr4 109406704 109406733 -74881929 + AT_rich Low_complexity Low_complexity 1 29 0 228 303 20 10 chr4 109410767 109410866 -74877796 + (TATATG)n Simple_repeat Simple_repeat 3 102 0 * 254 268 28 0 chr4 109410810 109410893 -74877769 + (CATA)n Simple_repeat Simple_repeat 1 85 0 200 267 44 0 chr4 109411113 109411158 -74877504 - L2 LINE L2 -13 3259 3213 228 35 0 0 chr4 109411290 109411319 -74877343 + (TTG)n Simple_repeat Simple_repeat 2 30 0 28 0 0 0 chr4 109411385 109411413 -74877249 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr4 109413408 109413439 -74875223 + AT_rich Low_complexity Low_complexity 1 31 0 1936 75 0 0 chr4 109414351 109414604 -74874058 + L1PA13 LINE L1 5895 6147 -16 27 49 0 0 chr4 109414605 109414646 -74874016 + AT_rich Low_complexity Low_complexity 1 41 0 320 148 20 30 chr4 109415205 109415306 -74873356 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 22 99 0 0 chr4 109416567 109416638 -74872024 + AT_rich Low_complexity Low_complexity 1 71 0 1519 214 114 0 chr4 109417144 109417452 -74871210 + Tigger7 DNA MER2_type 2 344 -2143 805 199 14 0 chr4 109417447 109417593 -74871069 + Tigger7 DNA MER2_type 2339 2486 -1 * 452 262 27 40 chr4 109418184 109418333 -74870329 - MIR3 SINE MIR -6 202 56 271 233 95 60 chr4 109418339 109418455 -74870207 - MIR SINE MIR 0 262 143 26 0 0 0 chr4 109418702 109418728 -74869934 + AT_rich Low_complexity Low_complexity 1 26 0 29 28 0 0 chr4 109420015 109420051 -74868611 + AT_rich Low_complexity Low_complexity 1 36 0 588 304 105 21 chr4 109422913 109423199 -74865463 + MLT1I LTR MaLR 98 407 -2 231 291 38 13 chr4 109423208 109423287 -74865375 - MIR SINE MIR -94 168 88 507 192 30 114 chr4 109423323 109423490 -74865172 + MIR SINE MIR 110 262 0 311 254 59 76 chr4 109423512 109423584 -74865078 + MIR SINE MIR 97 168 -94 4609 167 42 2 chr4 109423584 109424416 -74864246 + MER6 DNA MER2_type 1 865 0 311 254 59 76 chr4 109424416 109424461 -74864201 + MIR SINE MIR 168 212 -50 1049 196 10 0 chr4 109424690 109424894 -74863768 + MER3 DNA MER1_type 3 208 -1 747 320 114 41 chr4 109425285 109425989 -74862673 + L2 LINE L2 2558 3312 -1 376 349 7 7 chr4 109426683 109426835 -74861827 - L1ME LINE L1 -473 5648 5497 22 35 0 0 chr4 109427123 109427152 -74861510 + AT_rich Low_complexity Low_complexity 1 29 0 351 0 0 0 chr4 109427483 109427522 -74861140 + (CA)n Simple_repeat Simple_repeat 2 40 0 204 214 100 14 chr4 109428120 109428190 -74860472 - MER5C DNA MER1_type -130 194 119 254 309 45 55 chr4 109428401 109428511 -74860151 + MIR3 SINE MIR 91 199 -9 22 56 0 0 chr4 109428714 109428750 -74859912 + AT_rich Low_complexity Low_complexity 1 36 0 884 257 152 50 chr4 109428794 109429420 -74859242 - HAL1 LINE L1 -74 2433 1744 271 308 106 41 chr4 109429982 109430157 -74858505 - MIR3 SINE MIR -43 165 32 180 77 0 0 chr4 109430171 109430197 -74858465 + (TTA)n Simple_repeat Simple_repeat 2 27 0 237 263 11 32 chr4 109430512 109430607 -74858055 - L1ME LINE L1 -285 5836 5744 2070 106 17 20 chr4 109430614 109430916 -74857746 - AluSg SINE Alu -9 301 1 491 283 128 6 chr4 109431213 109431393 -74857269 + MIR SINE MIR 48 249 -13 214 64 0 85 chr4 109432621 109432668 -74855994 + (GAAA)n Simple_repeat Simple_repeat 3 45 0 1081 117 6 6 chr4 109433474 109433653 -74855009 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 303 28 0 0 chr4 109433653 109433689 -74854973 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 521 269 34 0 chr4 109433714 109433863 -74854799 + L2 LINE L2 2526 2679 -635 1048 232 13 9 chr4 109433863 109434087 -74854575 - MER45C DNA AcHobo 0 953 729 184 208 56 97 chr4 109434732 109434804 -74853858 + L2 LINE L2 3244 3312 -1 498 306 39 68 chr4 109435394 109435701 -74852961 - MER102a DNA MER1_type -6 324 27 240 35 0 0 chr4 109435880 109435909 -74852753 + (TTTTC)n Simple_repeat Simple_repeat 4 32 0 224 128 0 21 chr4 109435926 109435973 -74852689 + (TTTC)n Simple_repeat Simple_repeat 2 47 0 1075 16 0 0 chr4 109437417 109437542 -74851120 - L1P LINE L1 -3514 2632 2508 215 286 14 14 chr4 109439497 109439567 -74849095 + MIR3 SINE MIR 15 84 -124 27 49 0 0 chr4 109439747 109439788 -74848874 + AT_rich Low_complexity Low_complexity 1 41 0 540 196 0 0 chr4 109439833 109439930 -74848732 + AluJ/FLAM SINE Alu 1 97 -215 200 273 61 0 chr4 109440075 109440141 -74848521 - MIR SINE MIR -116 146 77 1136 321 76 57 chr4 109440156 109441140 -74847522 - L2 LINE L2 0 3272 2292 191 237 0 34 chr4 109442438 109442497 -74846165 + MIR SINE MIR 84 140 -122 2103 128 128 13 chr4 109445133 109445515 -74843147 - MSTA LTR MaLR -2 426 1 743 277 65 53 chr4 109445928 109446267 -74842395 + MLT1H LTR MaLR 103 445 -104 277 182 76 0 chr4 109446364 109446430 -74842232 + MLT1H LTR MaLR 472 542 0 759 280 154 12 chr4 109446676 109447079 -74841583 + MLT1C LTR MaLR 6 465 -2 374 234 35 5 chr4 109447348 109447465 -74841197 + MLT1E LTR MaLR 1 99 -368 279 383 19 0 chr4 109448012 109448119 -74840543 - MIR SINE MIR -152 110 2 21 36 0 0 chr4 109448446 109448474 -74840188 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 109448555 109448583 -74840079 + AT_rich Low_complexity Low_complexity 1 28 0 241 214 18 18 chr4 109449002 109449058 -74839604 + MIR3 SINE MIR 100 155 -53 833 285 80 69 chr4 109449603 109450327 -74838335 + L2 LINE L2 2600 3313 0 282 29 0 0 chr4 109451983 109452018 -74836644 + (CA)n Simple_repeat Simple_repeat 1 35 0 26 0 0 0 chr4 109452581 109452607 -74836055 + AT_rich Low_complexity Low_complexity 1 26 0 32 67 0 0 chr4 109453174 109453234 -74835428 + AT_rich Low_complexity Low_complexity 1 60 0 206 267 151 12 chr4 109453355 109453441 -74835221 - MIR SINE MIR -12 250 153 22 56 0 0 chr4 109453659 109453695 -74834967 + AT_rich Low_complexity Low_complexity 1 36 0 1183 235 77 22 chr4 109454204 109454527 -74834135 - Charlie1a DNA MER1_type -1075 380 40 1337 200 70 46 chr4 109454549 109454919 -74833743 + Charlie1a DNA MER1_type 409 787 -668 949 230 165 47 chr4 109454921 109455028 -74833634 + MLT1E LTR MaLR 212 305 -288 206 61 0 30 chr4 109455028 109455061 -74833601 + (CAA)n Simple_repeat Simple_repeat 2 33 0 949 230 165 47 chr4 109455061 109455292 -74833370 + MLT1E LTR MaLR 305 590 -3 258 125 0 42 chr4 109455333 109455381 -74833281 + MIR SINE MIR 211 256 -6 384 241 0 0 chr4 109455871 109455987 -74832675 + GA-rich Low_complexity Low_complexity 1 116 0 24 0 0 0 chr4 109456336 109456360 -74832302 + AT_rich Low_complexity Low_complexity 1 24 0 563 215 177 0 chr4 109456709 109456867 -74831795 - MIR SINE MIR -21 241 56 944 259 4 26 chr4 109457694 109457926 -74830736 + MIR SINE MIR 15 241 -21 432 253 82 57 chr4 109457978 109458220 -74830442 + MIR SINE MIR 18 262 0 2306 101 0 3 chr4 109458287 109458585 -74830077 - AluSx SINE Alu -15 297 1 233 292 15 0 chr4 109458824 109458889 -74829773 + MLT1E3 LTR MaLR 423 488 -136 218 339 54 18 chr4 109458994 109459106 -74829556 + L2 LINE L2 3180 3295 -18 226 204 74 19 chr4 109459978 109460032 -74828630 + MIR SINE MIR 5 61 -201 428 285 230 15 chr4 109460047 109460247 -74828415 + MIR SINE MIR 20 262 0 21 57 0 0 chr4 109461899 109461934 -74826728 + AT_rich Low_complexity Low_complexity 1 35 0 272 351 101 10 chr4 109463529 109463737 -74824925 - MIR SINE MIR -7 255 29 859 253 94 0 chr4 109464596 109464829 -74823833 + MIR SINE MIR 7 261 -1 436 284 51 51 chr4 109467249 109467446 -74821216 - MIR SINE MIR -46 216 20 192 335 41 35 chr4 109467884 109468054 -74820608 - L2 LINE L2 -188 3084 2914 492 189 47 28 chr4 109468074 109468180 -74820482 + MER5B DNA MER1_type 3 110 -68 1903 172 3 0 chr4 109468914 109469217 -74819445 - AluJo SINE Alu -8 304 1 2180 73 30 33 chr4 109469231 109469534 -74819128 - AluY SINE Alu -9 302 1 1370 219 10 70 chr4 109469834 109470217 -74818445 + MLT1A1 LTR MaLR 1 360 -5 23 33 0 0 chr4 109470993 109471023 -74817639 + AT_rich Low_complexity Low_complexity 1 30 0 358 253 11 11 chr4 109471308 109471403 -74817259 - MIR SINE MIR -89 173 79 1516 152 17 74 chr4 109472237 109472533 -74816129 + AluJo SINE Alu 1 279 -33 827 160 0 0 chr4 109472543 109472707 -74815955 + AluSg/x SINE Alu 164 327 0 6704 53 8 0 chr4 109472712 109474164 -74814498 - L1PA8 LINE L1 -9 6163 4681 289 157 39 0 chr4 109474193 109474244 -74814418 - MER66B LTR ERV1 -146 340 288 367 213 53 0 chr4 109474276 109474351 -74814311 - MER5A DNA MER1_type -110 79 1 326 348 108 27 chr4 109474351 109474682 -74813980 + L2 LINE L2 2127 2484 -830 743 243 45 50 chr4 109475501 109475723 -74812939 + MIR SINE MIR 1 221 -41 425 276 111 85 chr4 109476252 109476629 -74812033 - MLT1L LTR MaLR -223 392 6 706 237 39 77 chr4 109477812 109478124 -74810538 + LTR37A LTR ERV1 115 414 -12 189 0 0 0 chr4 109478517 109478538 -74810124 + (TA)n Simple_repeat Simple_repeat 2 22 0 2031 105 6 56 chr4 109478583 109478907 -74809755 + AluSq SINE Alu 6 313 0 3041 89 0 5 chr4 109480498 109480904 -74807758 + MLT2A1 LTR ERVL 1 404 -40 313 216 10 82 chr4 109481299 109481396 -74807266 + L1MC4 LINE L1 6614 6703 -1339 375 71 0 156 chr4 109481401 109481915 -74806747 + (TA)n Simple_repeat Simple_repeat 1 433 0 234 215 0 46 chr4 109481926 109481991 -74806671 + (TA)n Simple_repeat Simple_repeat 2 63 0 182 213 0 38 chr4 109482034 109482114 -74806548 + (TA)n Simple_repeat Simple_repeat 1 77 0 278 87 0 22 chr4 109482118 109482164 -74806498 + MLT2A1 LTR ERVL 390 434 -10 412 343 113 5 chr4 109482178 109482382 -74806280 - MIR SINE MIR 0 262 37 22 56 0 0 chr4 109483018 109483054 -74805608 + AT_rich Low_complexity Low_complexity 1 36 0 1715 126 84 0 chr4 109483123 109483411 -74805251 + AluSx SINE Alu 1 310 0 230 191 0 43 chr4 109483416 109483463 -74805199 + MLT1J LTR MaLR 1 45 -466 309 270 96 45 chr4 109483700 109483878 -74804784 + MLT1J LTR MaLR 323 509 -2 1669 171 0 38 chr4 109483958 109484273 -74804389 + AluJb SINE Alu 1 303 -9 202 287 217 8 chr4 109484381 109484510 -74804152 - MIR SINE MIR -78 184 29 206 389 91 18 chr4 109485410 109485631 -74803031 - MIR SINE MIR -6 256 20 189 107 0 0 chr4 109485732 109485760 -74802902 + (T)n Simple_repeat Simple_repeat 1 28 0 184 350 22 120 chr4 109486636 109487045 -74801617 + L2 LINE L2 1095 1463 -1851 605 224 151 87 chr4 109487213 109487605 -74801057 + MLT1H LTR MaLR 130 546 -3 327 221 135 10 chr4 109487817 109487921 -74800741 + L2 LINE L2 1863 1979 -1335 528 350 185 12 chr4 109488254 109488768 -74799894 + L3 LINE CR1 792 1394 -183 42421 37 23 1 chr4 109488781 109494793 -74793869 + L1PA2 LINE L1 1 6148 -7 26 0 0 0 chr4 109494810 109494836 -74793826 + AT_rich Low_complexity Low_complexity 1 26 0 515 114 38 0 chr4 109496853 109496932 -74791730 - MSTA LTR MaLR 0 426 345 * 813 153 125 0 chr4 109496927 109497071 -74791591 - MSTA LTR MaLR -266 162 1 281 368 10 36 chr4 109497179 109497372 -74791290 - L2 LINE L2 -15 3298 3111 487 337 72 0 chr4 109498073 109498266 -74790396 + MIR SINE MIR 20 226 -36 216 158 0 0 chr4 109498339 109498377 -74790285 + A-rich Low_complexity Low_complexity 1 38 0 182 455 5 40 chr4 109498712 109498912 -74789750 + L2 LINE L2 2987 3179 -93 468 262 0 16 chr4 109499458 109499580 -74789082 - L2 LINE L2 0 3313 3194 22 35 0 0 chr4 109499931 109499960 -74788702 + AT_rich Low_complexity Low_complexity 1 29 0 2452 49 0 0 chr4 109500433 109500749 -74787913 + AluY SINE Alu 1 316 0 772 183 27 21 chr4 109502234 109502420 -74786242 + MER53 DNA DNA 3 189 0 826 271 17 12 chr4 109502677 109502917 -74785745 - MIR SINE MIR -2 260 20 1164 170 39 0 chr4 109503277 109503506 -74785156 - L1MA6 LINE L1 0 6300 6063 742 211 94 31 chr4 109503690 109503885 -74784777 - MIR SINE MIR -18 244 32 2210 124 0 0 chr4 109503885 109504191 -74784471 - AluSx SINE Alu -6 306 1 742 211 94 31 chr4 109504191 109504218 -74784444 - MIR SINE MIR -230 32 8 221 211 18 0 chr4 109504953 109505010 -74783652 + (TATG)n Simple_repeat Simple_repeat 3 60 0 6248 121 27 25 chr4 109505075 109506133 -74782529 + Tigger3b DNA MER2_type 2 1062 -169 304 245 51 0 chr4 109506430 109506528 -74782134 - MIR SINE MIR -26 236 134 1592 169 37 4 chr4 109507001 109507274 -74781388 + AluJb SINE Alu 1 282 -30 21 0 0 0 chr4 109507791 109507812 -74780850 + AT_rich Low_complexity Low_complexity 1 21 0 565 250 239 5 chr4 109508127 109508315 -74780347 - MIR SINE MIR -28 234 3 21 0 0 0 chr4 109508465 109508486 -74780176 + AT_rich Low_complexity Low_complexity 1 21 0 879 212 27 5 chr4 109509010 109509194 -74779468 - MER5A DNA MER1_type -1 188 1 1293 212 86 66 chr4 109509294 109509932 -74778730 + L1MC5 LINE L1 7281 7931 -30 1741 145 60 0 chr4 109509932 109510214 -74778448 + AluSx SINE Alu 1 299 -13 2081 113 59 34 chr4 109510414 109510769 -74777893 + THE1B LTR MaLR 1 364 0 191 256 13 128 chr4 109511677 109511755 -74776907 + L2 LINE L2 3188 3256 -16 249 287 62 31 chr4 109511922 109512051 -74776611 - L2 LINE L2 -522 2792 2660 2521 126 3 0 chr4 109512119 109512493 -74776169 - THE1C LTR MaLR 0 375 1 2303 107 6 12 chr4 109512493 109512819 -74775843 - THE1C-int LTR MaLR 0 1580 1257 226 254 0 0 chr4 109513655 109513710 -74774952 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 217 250 73 0 chr4 109514210 109514278 -74774384 - MIR SINE MIR -72 190 118 563 310 31 38 chr4 109514578 109514839 -74773823 - MIR SINE MIR 0 262 4 342 309 161 12 chr4 109514901 109515069 -74773593 - MIR SINE MIR -50 212 20 290 119 0 102 chr4 109515303 109515362 -74773300 - MER63 DNA MER1_type -293 769 717 540 200 0 43 chr4 109515480 109515620 -74773042 + L1MB1 LINE L1 5735 5868 -321 883 164 147 38 chr4 109515920 109516158 -74772504 + ORSL DNA AcHobo 1 264 -11 304 314 0 0 chr4 109516320 109516406 -74772256 + L2 LINE L2 3227 3312 -1 4926 43 2 0 chr4 109516919 109517521 -74771141 - L1PA4 LINE L1 -1 6154 5552 2355 37 14 5 chr4 109517521 109517927 -74770735 + L1PA4 LINE L1 5152 5559 -595 183 258 227 0 chr4 109517927 109517993 -74770669 + MIR SINE MIR 126 206 -56 1962 104 0 7 chr4 109518438 109518708 -74769954 - AluSx SINE Alu -44 268 1 1924 149 56 34 chr4 109518901 109519257 -74769405 + THE1B LTR MaLR 1 364 0 211 244 101 59 chr4 109519433 109519552 -74769110 - MIR SINE MIR 0 262 139 216 0 0 0 chr4 109519557 109519581 -74769081 + (A)n Simple_repeat Simple_repeat 1 24 0 4491 76 2 8 chr4 109519796 109520399 -74768263 - L1P LINE L1 -5546 600 2 445 121 0 0 chr4 109520402 109520468 -74768194 + MLT1A1 LTR MaLR 297 362 -3 434 250 8 17 chr4 109520977 109521097 -74767565 + L1M4 LINE L1 4504 4622 -1524 26 30 0 0 chr4 109521121 109521154 -74767508 + AT_rich Low_complexity Low_complexity 1 33 0 38499 33 2 1 chr4 109521821 109527329 -74761333 + L1PA3 LINE L1 665 6177 0 1537 188 23 7 chr4 109527329 109527632 -74761030 - MLT1A1 LTR MaLR -57 308 1 404 339 68 0 chr4 109527832 109527950 -74760712 - L2 LINE L2 -13 3259 3134 343 333 33 44 chr4 109528273 109528453 -74760209 + MER5A DNA MER1_type 12 189 0 1264 286 72 24 chr4 109530123 109530710 -74757952 + L2 LINE L2 2667 3309 -4 192 308 15 15 chr4 109531574 109531639 -74757023 + MIR SINE MIR 3 67 -195 541 301 100 13 chr4 109531649 109531888 -74756774 - MIR SINE MIR 0 262 3 433 264 98 24 chr4 109532005 109532251 -74756411 + L1MC5 LINE L1 7632 7895 -66 22 88 0 0 chr4 109533511 109533568 -74755094 + AT_rich Low_complexity Low_complexity 1 57 0 381 276 146 27 chr4 109533633 109533818 -74754844 + MIR SINE MIR 1 207 -55 434 235 56 17 chr4 109538322 109538501 -74750161 - MER113 DNA MER1_type? -334 187 2 3998 243 16 28 chr4 109538624 109539805 -74748857 + L1M4 LINE L1 3025 4191 -1955 560 199 116 50 chr4 109539805 109539986 -74748676 + MLT1I LTR MaLR 11 203 -206 275 231 0 31 chr4 109540068 109540133 -74748529 + MLT1I LTR MaLR 345 407 -2 2381 39 10 26 chr4 109541246 109541553 -74747109 + AluY SINE Alu 1 302 -9 433 322 45 67 chr4 109541846 109542160 -74746502 + L2 LINE L2 3006 3312 -1 621 278 35 17 chr4 109542233 109542406 -74746256 - MIR SINE MIR -14 248 73 40 59 0 0 chr4 109542415 109542483 -74746179 + AT_rich Low_complexity Low_complexity 1 68 0 23 0 0 0 chr4 109542505 109542528 -74746134 + AT_rich Low_complexity Low_complexity 1 23 0 1029 186 23 27 chr4 109543482 109543702 -74744960 + MER20 DNA MER1_type 1 219 0 470 200 131 41 chr4 109543800 109543945 -74744717 - L2 LINE L2 -3 3310 3153 899 255 78 90 chr4 109543978 109544397 -74744265 - LTR16A LTR ERVL -55 395 1 1143 315 126 6 chr4 109544404 109545125 -74743537 - L2 LINE L2 -178 3135 2320 508 277 140 30 chr4 109545272 109545507 -74743155 - MLT1J LTR MaLR -250 261 1 686 251 6 25 chr4 109545507 109545670 -74742992 - L2 LINE L2 -995 2319 2160 392 221 58 0 chr4 109545699 109545785 -74742877 + MLT1G1 LTR MaLR 15 105 -490 4530 140 22 10 chr4 109545786 109546742 -74741920 + L1PA16 LINE L1 5021 5986 -180 230 186 0 0 chr4 109546722 109546765 -74741897 + L1PA15 LINE L1 5929 5971 -194 * 1281 149 36 9 chr4 109546765 109546987 -74741675 + L1PA16 LINE L1 5929 6156 -10 546 288 74 0 chr4 109547004 109547167 -74741495 + MLT1G LTR MaLR 52 226 -364 1862 138 3 20 chr4 109548199 109548504 -74740158 + AluJo SINE Alu 13 312 0 23 0 0 0 chr4 109549418 109549441 -74739221 + AT_rich Low_complexity Low_complexity 1 23 0 322 312 52 50 chr4 109549638 109549855 -74738807 - MIR SINE MIR -50 212 2 205 345 176 12 chr4 109550194 109550449 -74738213 + L3 LINE CR1 406 702 -875 246 62 0 0 chr4 109550695 109550727 -74737935 + (CA)n Simple_repeat Simple_repeat 1 32 0 1298 161 43 40 chr4 109550957 109551279 -74737383 + L1MA4A LINE L1 5981 6303 0 204 227 0 0 chr4 109552101 109552145 -74736517 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 1628 195 19 93 chr4 109552826 109553247 -74735415 - MLT1B LTR MaLR 0 390 1 746 228 19 38 chr4 109553449 109553660 -74735002 - MLT1K LTR MaLR -2 586 380 267 381 92 17 chr4 109553703 109553942 -74734720 - MLT1K LTR MaLR -319 269 13 225 320 0 0 chr4 109556410 109556485 -74732177 - MIR SINE MIR -2 260 186 184 265 0 0 chr4 109556529 109556578 -74732084 + L2 LINE L2 3265 3313 0 741 184 27 65 chr4 109556584 109556769 -74731893 - MIR SINE MIR -3 259 82 425 272 18 18 chr4 109556802 109556916 -74731746 - MIR SINE MIR -131 131 18 550 276 0 0 chr4 109557168 109557273 -74731389 + MER45C DNA AcHobo 1 105 -848 199 265 20 0 chr4 109557280 109557329 -74731333 - MIR SINE MIR -131 131 82 1048 316 52 54 chr4 109557332 109557854 -74730808 + MER45C DNA AcHobo 113 633 -320 229 111 56 0 chr4 109557848 109557884 -74730778 + MER45C DNA AcHobo 898 935 -18 * 3674 274 112 34 chr4 109557955 109559419 -74729243 - L2 LINE L2 -815 2499 921 320 283 108 60 chr4 109559966 109560436 -74728226 - L1M4 LINE L1 -801 5345 4853 212 311 0 0 chr4 109560659 109560720 -74727942 - L2 LINE L2 -11 3261 3201 357 273 10 103 chr4 109560758 109560860 -74727802 - MIR SINE MIR -7 255 178 2362 56 7 7 chr4 109560860 109561162 -74727500 + AluY SINE Alu 1 302 -9 357 273 10 103 chr4 109561162 109561253 -74727409 - MIR SINE MIR -84 178 80 288 235 12 62 chr4 109561956 109562037 -74726625 - MIR3 SINE MIR -54 154 78 1921 109 56 3 chr4 109562525 109562810 -74725852 + AluSc SINE Alu 1 300 -9 22 0 0 0 chr4 109563232 109563254 -74725408 + AT_rich Low_complexity Low_complexity 1 22 0 2653 19 0 7 chr4 109563442 109563750 -74724912 + AluY SINE Alu 1 306 -5 426 300 15 0 chr4 109566920 109567050 -74721612 - MIR SINE MIR -57 205 74 200 410 42 0 chr4 109567508 109567603 -74721059 + L2 LINE L2 3149 3247 -25 471 280 45 35 chr4 109567610 109567810 -74720852 - L2 LINE L2 0 3313 3112 385 315 123 0 chr4 109567948 109568094 -74720568 + MIR SINE MIR 96 259 -3 259 380 80 19 chr4 109570805 109571068 -74717594 + L3 LINE CR1 1215 1493 -84 315 0 0 0 chr4 109571134 109571169 -74717493 + (CA)n Simple_repeat Simple_repeat 2 36 0 2281 71 0 3 chr4 109571175 109571458 -74717204 - AluY SINE Alu -27 284 3 206 350 0 0 chr4 109572559 109572619 -74716043 - MER5A DNA MER1_type -59 130 71 24 0 0 0 chr4 109573434 109573458 -74715204 + AT_rich Low_complexity Low_complexity 1 24 0 1334 120 46 0 chr4 109573537 109573754 -74714908 - L1MA4 LINE L1 0 6300 6074 8297 42 1 0 chr4 109575397 109576416 -74712246 - L1PA5 LINE L1 -1115 5031 4012 7188 39 8 0 chr4 109576419 109577568 -74711094 + L1PA5 LINE L1 5008 6164 0 270 0 0 0 chr4 109577588 109577618 -74711044 + (A)n Simple_repeat Simple_repeat 1 30 0 408 387 10 10 chr4 109577672 109577866 -74710796 - MIR SINE MIR -18 244 51 310 299 41 10 chr4 109578029 109578126 -74710536 + MIR SINE MIR 103 202 -60 232 348 123 21 chr4 109578814 109579001 -74709661 - MIR SINE MIR -50 212 7 2794 178 64 2 chr4 109579187 109579792 -74708870 + L1PA16 LINE L1 5493 6157 -9 3506 125 19 0 chr4 109580155 109580668 -74707994 + MER1A DNA MER1_type 1 523 -4 1778 88 58 146 chr4 109580703 109581114 -74707548 - THE1C LTR MaLR 0 375 1 329 338 211 8 chr4 109581537 109581930 -74706732 + L2 LINE L2 1775 2247 -1067 323 312 28 18 chr4 109582048 109582157 -74706505 + L2 LINE L2 2248 2357 -957 447 239 108 23 chr4 109582492 109582622 -74706040 - MER69 DNA AcHobo 0 2526 2386 1447 279 55 33 chr4 109583086 109583545 -74705117 - MER115 DNA AcHobo -3 690 222 398 378 0 13 chr4 109583573 109583729 -74704933 - MER115 DNA AcHobo -539 154 1 201 250 19 0 chr4 109583817 109583869 -74704793 + (TGAA)n Simple_repeat Simple_repeat 4 56 0 222 341 32 48 chr4 109584024 109584150 -74704512 + MER5A DNA MER1_type 65 188 -1 27 49 0 0 chr4 109584576 109584617 -74704045 + AT_rich Low_complexity Low_complexity 1 41 0 371 348 40 30 chr4 109584771 109584972 -74703690 + MIR SINE MIR 50 252 -10 245 289 53 35 chr4 109586737 109586851 -74701811 + MIR3 SINE MIR 54 169 -39 26 82 0 0 chr4 109587255 109587316 -74701346 + AT_rich Low_complexity Low_complexity 1 61 0 23 68 0 0 chr4 109590184 109590228 -74698434 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr4 109591607 109591630 -74697032 + AT_rich Low_complexity Low_complexity 1 23 0 611 308 84 43 chr4 109592725 109593189 -74695473 - L2 LINE L2 0 3313 2831 223 337 48 0 chr4 109593303 109593386 -74695276 - MIR SINE MIR -85 123 37 384 261 78 86 chr4 109593669 109594094 -74694568 + MLT1J2 LTR MaLR 1 461 -50 7093 48 6 0 chr4 109594097 109595549 -74693113 - L1PA5 LINE L1 0 6154 4697 612 274 219 5 chr4 109596399 109596614 -74692048 - MIR SINE MIR -1 261 1 580 83 97 7 chr4 109597569 109597869 -74690793 + (TA)n Simple_repeat Simple_repeat 1 327 0 399 88 101 13 chr4 109598179 109598338 -74690324 + (TA)n Simple_repeat Simple_repeat 1 173 0 387 0 0 0 chr4 109599103 109599146 -74689516 + (TG)n Simple_repeat Simple_repeat 2 44 0 253 69 0 49 chr4 109599186 109599234 -74689428 - L1ME LINE L1 -603 5561 5516 210 71 0 0 chr4 109599472 109599500 -74689162 + (CATATA)n Simple_repeat Simple_repeat 3 30 0 475 293 95 52 chr4 109599504 109599963 -74688699 + L1MC4a LINE L1 5373 5805 -316 219 98 0 98 chr4 109600116 109600177 -74688485 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 208 267 151 12 chr4 109601019 109601105 -74687557 - MIR SINE MIR -12 250 153 22 56 0 0 chr4 109601323 109601359 -74687303 + AT_rich Low_complexity Low_complexity 1 36 0 1189 235 77 22 chr4 109601868 109602191 -74686471 - Charlie1a DNA MER1_type -1075 380 40 1353 200 70 46 chr4 109602213 109602583 -74686079 + Charlie1a DNA MER1_type 409 787 -668 944 230 165 47 chr4 109602585 109602692 -74685970 + MLT1E LTR MaLR 212 305 -288 206 61 0 30 chr4 109602692 109602725 -74685937 + (CAA)n Simple_repeat Simple_repeat 2 33 0 944 230 165 47 chr4 109602725 109602956 -74685706 + MLT1E LTR MaLR 305 590 -3 259 125 0 42 chr4 109602997 109603045 -74685617 + MIR SINE MIR 211 256 -6 384 241 0 0 chr4 109603535 109603651 -74685011 + GA-rich Low_complexity Low_complexity 1 116 0 24 0 0 0 chr4 109604000 109604024 -74684638 + AT_rich Low_complexity Low_complexity 1 24 0 563 215 177 0 chr4 109604373 109604531 -74684131 - MIR SINE MIR -21 241 56 944 259 4 26 chr4 109605358 109605590 -74683072 + MIR SINE MIR 15 241 -21 432 253 82 57 chr4 109605642 109605884 -74682778 + MIR SINE MIR 18 262 0 2306 101 0 3 chr4 109605951 109606249 -74682413 - AluSx SINE Alu -15 297 1 233 292 15 0 chr4 109606488 109606553 -74682109 + MLT1E3 LTR MaLR 423 488 -136 218 339 54 18 chr4 109606658 109606770 -74681892 + L2 LINE L2 3180 3295 -18 226 204 74 19 chr4 109607642 109607696 -74680966 + MIR SINE MIR 5 61 -201 428 285 230 15 chr4 109607711 109607911 -74680751 + MIR SINE MIR 20 262 0 21 57 0 0 chr4 109609632 109609667 -74678995 + AT_rich Low_complexity Low_complexity 1 35 0 272 351 101 10 chr4 109611261 109611469 -74677193 - MIR SINE MIR -7 255 29 859 253 94 0 chr4 109612328 109612561 -74676101 + MIR SINE MIR 7 261 -1 436 284 51 51 chr4 109614981 109615178 -74673484 - MIR SINE MIR -46 216 20 192 335 41 35 chr4 109615616 109615786 -74672876 - L2 LINE L2 -188 3084 2914 492 189 47 28 chr4 109615806 109615912 -74672750 + MER5B DNA MER1_type 3 110 -68 1903 172 3 0 chr4 109616646 109616949 -74671713 - AluJo SINE Alu -8 304 1 2180 73 30 33 chr4 109616963 109617266 -74671396 - AluY SINE Alu -9 302 1 1370 219 10 70 chr4 109617566 109617949 -74670713 + MLT1A1 LTR MaLR 1 360 -5 23 33 0 0 chr4 109618725 109618755 -74669907 + AT_rich Low_complexity Low_complexity 1 30 0 358 253 11 11 chr4 109619040 109619135 -74669527 - MIR SINE MIR -89 173 79 1518 148 17 81 chr4 109619969 109620267 -74668395 + AluJo SINE Alu 1 279 -33 827 160 0 0 chr4 109620277 109620441 -74668221 + AluSg/x SINE Alu 164 327 0 6704 53 8 0 chr4 109620446 109621898 -74666764 - L1PA8 LINE L1 -9 6163 4681 289 157 39 0 chr4 109621927 109621978 -74666684 - MER66B LTR ERV1 -146 340 288 367 213 53 0 chr4 109622010 109622085 -74666577 - MER5A DNA MER1_type -110 79 1 326 348 108 27 chr4 109622085 109622416 -74666246 + L2 LINE L2 2127 2484 -830 743 243 45 50 chr4 109623235 109623457 -74665205 + MIR SINE MIR 1 221 -41 425 276 111 85 chr4 109623986 109624363 -74664299 - MLT1L LTR MaLR -223 392 6 706 237 39 77 chr4 109625546 109625858 -74662804 + LTR37A LTR ERV1 115 414 -12 189 0 0 0 chr4 109626251 109626272 -74662390 + (TA)n Simple_repeat Simple_repeat 1 21 0 2031 105 6 56 chr4 109626317 109626641 -74662021 + AluSq SINE Alu 6 313 0 3041 89 0 5 chr4 109628232 109628638 -74660024 + MLT2A1 LTR ERVL 1 404 -40 241 268 14 0 chr4 109629211 109629282 -74659380 + MIR SINE MIR 165 236 -26 6248 122 35 15 chr4 109629579 109630053 -74658609 - Tigger3b DNA MER2_type -1966 1062 599 234 0 0 0 chr4 109630053 109630079 -74658583 + (TA)n Simple_repeat Simple_repeat 2 27 0 6248 122 35 15 chr4 109630079 109630645 -74658017 - Tigger3b DNA MER2_type -2429 599 2 221 211 18 0 chr4 109630710 109630767 -74657895 + (CATA)n Simple_repeat Simple_repeat 3 60 0 742 211 94 31 chr4 109631502 109631529 -74657133 + MIR SINE MIR 8 32 -230 2224 121 0 0 chr4 109631529 109631835 -74656827 + AluSx SINE Alu 1 306 -6 742 211 94 31 chr4 109631835 109632030 -74656632 + MIR SINE MIR 32 244 -18 1141 175 39 0 chr4 109632214 109632443 -74656219 + L1MA6 LINE L1 6063 6300 0 826 271 17 12 chr4 109632803 109633043 -74655619 + MIR SINE MIR 20 260 -2 772 183 27 21 chr4 109633300 109633486 -74655176 - MER53 DNA DNA 0 189 3 2465 46 0 0 chr4 109634971 109635287 -74653375 - AluY SINE Alu 0 316 1 22 35 0 0 chr4 109635760 109635789 -74652873 + AT_rich Low_complexity Low_complexity 1 29 0 468 262 0 16 chr4 109636140 109636262 -74652400 + L2 LINE L2 3194 3313 0 182 455 5 40 chr4 109636808 109637008 -74651654 - L2 LINE L2 -93 3179 2987 216 158 0 0 chr4 109637343 109637381 -74651281 + T-rich Low_complexity Low_complexity 1 38 0 487 337 72 0 chr4 109637454 109637647 -74651015 - MIR SINE MIR -36 226 20 281 368 10 36 chr4 109638348 109638541 -74650121 + L2 LINE L2 3111 3298 -15 813 153 125 0 chr4 109638649 109638793 -74649869 + MSTA LTR MaLR 1 162 -266 515 114 38 0 chr4 109638788 109638867 -74649795 + MSTA LTR MaLR 345 426 0 * 26 0 0 0 chr4 109640884 109640910 -74647752 + AT_rich Low_complexity Low_complexity 1 26 0 42421 37 23 1 chr4 109640927 109646939 -74641723 - L1PA2 LINE L1 -7 6148 1 528 350 185 12 chr4 109646952 109647466 -74641196 - L3 LINE CR1 -183 1394 792 327 221 135 10 chr4 109647799 109647903 -74640759 - L2 LINE L2 -1335 1979 1863 605 224 151 87 chr4 109648115 109648507 -74640155 - MLT1H LTR MaLR -3 546 130 184 350 22 120 chr4 109648675 109649084 -74639578 - L2 LINE L2 -1851 1463 1095 231 114 0 0 chr4 109649998 109650033 -74638629 + (A)n Simple_repeat Simple_repeat 1 35 0 206 389 91 18 chr4 109650135 109650356 -74638306 + MIR SINE MIR 20 256 -6 202 287 217 8 chr4 109651256 109651385 -74637277 + MIR SINE MIR 29 184 -78 1669 171 0 38 chr4 109651493 109651808 -74636854 - AluJb SINE Alu -9 303 1 309 270 96 45 chr4 109651888 109652066 -74636596 - MLT1J LTR MaLR -2 509 323 230 191 0 43 chr4 109652303 109652350 -74636312 - MLT1J LTR MaLR -466 45 1 1714 126 84 0 chr4 109652355 109652643 -74636019 - AluSx SINE Alu 0 310 1 22 56 0 0 chr4 109652712 109652748 -74635914 + AT_rich Low_complexity Low_complexity 1 36 0 412 343 113 5 chr4 109653384 109653588 -74635074 + MIR SINE MIR 37 262 0 278 87 0 22 chr4 109653602 109653648 -74635014 - MLT2A1 LTR ERVL -10 434 390 182 213 0 38 chr4 109653652 109653732 -74634930 + (TA)n Simple_repeat Simple_repeat 1 77 0 243 273 0 0 chr4 109653775 109653841 -74634821 + (TA)n Simple_repeat Simple_repeat 2 67 0 282 97 6 137 chr4 109653852 109654027 -74634635 + (TA)n Simple_repeat Simple_repeat 2 153 0 390 88 94 19 chr4 109654197 109654356 -74634306 + (TA)n Simple_repeat Simple_repeat 2 172 0 598 83 96 7 chr4 109654666 109654968 -74633694 + (TA)n Simple_repeat Simple_repeat 1 329 0 601 274 219 5 chr4 109655923 109656138 -74632524 + MIR SINE MIR 1 261 -1 7073 49 8 1 chr4 109656988 109658440 -74630222 + L1PA5 LINE L1 4697 6154 0 408 258 79 87 chr4 109658443 109658868 -74629794 - MLT1J2 LTR MaLR -50 461 1 222 337 48 0 chr4 109659151 109659234 -74629428 + MIR SINE MIR 37 123 -85 621 308 84 43 chr4 109659348 109659812 -74628850 + L2 LINE L2 2831 3313 0 23 0 0 0 chr4 109660907 109660930 -74627732 + AT_rich Low_complexity Low_complexity 1 23 0 449 267 17 35 chr4 109661397 109661569 -74627093 - MIR SINE MIR -74 188 20 21 0 0 0 chr4 109661853 109661874 -74626788 + AT_rich Low_complexity Low_complexity 1 21 0 565 250 239 5 chr4 109662189 109662377 -74626285 - MIR SINE MIR -28 234 3 21 0 0 0 chr4 109662527 109662548 -74626114 + AT_rich Low_complexity Low_complexity 1 21 0 889 211 27 5 chr4 109663071 109663256 -74625406 - MER5A DNA MER1_type 0 189 1 1310 210 86 66 chr4 109663356 109663994 -74624668 + L1MC5 LINE L1 7281 7931 -30 1749 145 60 0 chr4 109663994 109664277 -74624385 + AluSx SINE Alu 1 300 -12 2063 116 59 34 chr4 109664477 109664832 -74623830 + THE1B LTR MaLR 1 364 0 635 237 150 6 chr4 109665846 109666019 -74622643 - MIR SINE MIR -4 258 61 592 75 0 0 chr4 109666206 109666286 -74622376 + MADE1 DNA Mariner 1 80 0 336 64 0 0 chr4 109668347 109668394 -74620268 + (CA)n Simple_repeat Simple_repeat 2 48 0 815 257 88 4 chr4 109669998 109670224 -74618438 + MIR SINE MIR 12 256 -6 538 272 94 20 chr4 109670394 109670596 -74618066 - MIR SINE MIR 0 262 46 24 32 0 0 chr4 109670760 109670791 -74617871 + AT_rich Low_complexity Low_complexity 1 31 0 236 371 22 22 chr4 109670849 109670938 -74617724 + MIR3 SINE MIR 12 100 -108 203 103 26 0 chr4 109671356 109671395 -74617267 + (TG)n Simple_repeat Simple_repeat 2 41 0 973 264 12 19 chr4 109673895 109674153 -74614509 + MIR SINE MIR 7 262 0 997 293 65 11 chr4 109674651 109675002 -74613660 + MLT1I LTR MaLR 40 409 0 213 311 0 0 chr4 109675487 109675548 -74613114 - L2 LINE L2 -11 3261 3201 361 273 10 103 chr4 109675586 109675688 -74612974 - MIR SINE MIR -7 255 178 2412 62 7 3 chr4 109675688 109675992 -74612670 + AluY SINE Alu 1 305 -6 361 273 10 103 chr4 109675992 109676083 -74612579 - MIR SINE MIR -84 178 80 293 235 12 62 chr4 109676786 109676867 -74611795 - MIR3 SINE MIR -54 154 78 1957 108 56 3 chr4 109677355 109677641 -74611021 + AluSc SINE Alu 1 301 -8 22 0 0 0 chr4 109678065 109678087 -74610575 + AT_rich Low_complexity Low_complexity 1 22 0 2696 19 0 7 chr4 109678275 109678583 -74610079 + AluY SINE Alu 1 306 -5 425 300 15 0 chr4 109681766 109681896 -74606766 - MIR SINE MIR -57 205 74 203 400 42 0 chr4 109682354 109682449 -74606213 + L2 LINE L2 3149 3247 -25 459 280 45 35 chr4 109682456 109682656 -74606006 - L2 LINE L2 0 3313 3112 377 315 123 0 chr4 109682794 109682940 -74605722 + MIR SINE MIR 96 259 -3 239 369 85 21 chr4 109685647 109685883 -74602779 + L3 LINE CR1 1215 1465 -112 297 0 0 0 chr4 109685974 109686007 -74602655 + (CA)n Simple_repeat Simple_repeat 2 34 0 2321 71 0 3 chr4 109686013 109686296 -74602366 - AluY SINE Alu -27 284 3 205 350 0 0 chr4 109687397 109687457 -74601205 - MER5A DNA MER1_type -59 130 71 24 0 0 0 chr4 109688268 109688292 -74600370 + AT_rich Low_complexity Low_complexity 1 24 0 1325 120 46 0 chr4 109688371 109688588 -74600074 - L1MA4 LINE L1 0 6300 6074 8264 42 2 0 chr4 109690232 109691250 -74597412 - L1PA5 LINE L1 -1115 5031 4012 7245 39 9 0 chr4 109691253 109692403 -74596259 + L1PA5 LINE L1 5008 6164 0 443 326 14 68 chr4 109692469 109692690 -74595972 - MIR SINE MIR -3 259 51 317 299 41 10 chr4 109692853 109692950 -74595712 + MIR SINE MIR 103 202 -60 227 328 142 8 chr4 109693638 109693815 -74594847 - MIR SINE MIR -50 212 12 2791 178 64 2 chr4 109694013 109694616 -74594046 + L1PA16 LINE L1 5495 6157 -9 3558 123 19 0 chr4 109694979 109695492 -74593170 + MER1A DNA MER1_type 1 523 -4 1791 87 58 148 chr4 109695527 109695939 -74592723 - THE1C LTR MaLR 0 375 1 315 341 211 8 chr4 109696362 109696755 -74591907 + L2 LINE L2 1775 2247 -1067 207 250 0 31 chr4 109696767 109696831 -74591831 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 326 312 28 18 chr4 109696873 109696982 -74591680 + L2 LINE L2 2248 2357 -957 439 239 108 23 chr4 109697317 109697447 -74591215 - MER69 DNA AcHobo 0 2526 2386 1457 279 55 33 chr4 109697911 109698370 -74590292 - MER115 DNA AcHobo -3 690 222 405 378 0 13 chr4 109698398 109698554 -74590108 - MER115 DNA AcHobo -539 154 1 201 250 19 0 chr4 109698642 109698694 -74589968 + (TGAA)n Simple_repeat Simple_repeat 4 56 0 211 341 32 48 chr4 109698849 109698975 -74589687 + MER5A DNA MER1_type 65 188 -1 27 49 0 0 chr4 109699401 109699442 -74589220 + AT_rich Low_complexity Low_complexity 1 41 0 369 348 40 30 chr4 109699596 109699797 -74588865 + MIR SINE MIR 50 252 -10 231 298 53 35 chr4 109701563 109701677 -74586985 + MIR3 SINE MIR 54 169 -39 26 82 0 0 chr4 109702081 109702142 -74586520 + AT_rich Low_complexity Low_complexity 1 61 0 23 68 0 0 chr4 109705010 109705054 -74583608 + AT_rich Low_complexity Low_complexity 1 44 0 372 43 0 0 chr4 109705909 109705955 -74582707 + (TG)n Simple_repeat Simple_repeat 1 46 0 253 69 0 49 chr4 109705988 109706036 -74582626 - L1ME LINE L1 -603 5561 5516 210 71 0 0 chr4 109706274 109706302 -74582360 + (CATATA)n Simple_repeat Simple_repeat 3 30 0 475 293 95 52 chr4 109706306 109706765 -74581897 + L1MC4a LINE L1 5373 5805 -316 219 98 0 98 chr4 109706918 109706979 -74581683 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 23 0 0 0 chr4 109707767 109707790 -74580872 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr4 109708235 109708265 -74580397 + AT_rich Low_complexity Low_complexity 1 30 0 326 268 125 67 chr4 109708723 109708749 -74579913 + L2 LINE L2 2697 2720 -594 1985 106 23 20 chr4 109708749 109709051 -74579611 + AluSx SINE Alu 1 303 -9 326 268 125 67 chr4 109709051 109709248 -74579414 + L2 LINE L2 2720 2933 -381 2555 140 15 17 chr4 109709537 109710007 -74578655 - L1MB3 LINE L1 -5 6178 5710 1251 167 68 32 chr4 109710113 109710365 -74578297 - L1MB3 LINE L1 -479 5704 5444 614 202 74 89 chr4 109713474 109713713 -74574949 - MIR SINE MIR -23 239 4 339 25 0 0 chr4 109714124 109714164 -74574498 + (CA)n Simple_repeat Simple_repeat 2 41 0 298 157 114 0 chr4 109716703 109716773 -74571889 + MIR SINE MIR 183 260 -2 180 0 0 0 chr4 109717657 109717677 -74570985 + (T)n Simple_repeat Simple_repeat 1 20 0 365 376 19 0 chr4 109719994 109720151 -74568511 - MIR3 SINE MIR -1 207 48 234 0 0 0 chr4 109720173 109720199 -74568463 + (CA)n Simple_repeat Simple_repeat 1 26 0 971 228 29 0 chr4 109721192 109721398 -74567264 + MER20 DNA MER1_type 3 214 -5 218 354 106 6 chr4 109721495 109721656 -74567006 + L2 LINE L2 2341 2517 -797 938 216 16 0 chr4 109721963 109722148 -74566514 - MER5A DNA MER1_type 0 189 2 522 257 97 21 chr4 109722153 109722297 -74566365 - MER5B DNA MER1_type -23 155 1 184 295 87 79 chr4 109722375 109722616 -74566046 + L2 LINE L2 2811 3053 -219 22 56 0 0 chr4 109724448 109724484 -74564178 + AT_rich Low_complexity Low_complexity 1 36 0 240 311 25 19 chr4 109726722 109726883 -74561779 + L1MC4a LINE L1 4969 5130 -1016 248 330 78 22 chr4 109726956 109727495 -74561167 + L1MC4a LINE L1 5254 5928 -1880 360 0 0 0 chr4 109727504 109727544 -74561118 + (CA)n Simple_repeat Simple_repeat 1 40 0 24 0 0 0 chr4 109827934 109827958 -74460704 + AT_rich Low_complexity Low_complexity 1 24 0 1707 105 8 4 chr4 109827958 109828225 -74460437 - L1MA2 LINE L1 0 6304 6037 9962 104 45 19 chr4 109828226 109829610 -74459052 + Tigger4(Zombi) DNA MER2_type 1146 2577 -154 243 0 0 0 chr4 109829610 109829637 -74459025 + (TA)n Simple_repeat Simple_repeat 2 28 0 9962 104 45 19 chr4 109829637 109829793 -74458869 + Tigger4(Zombi) DNA MER2_type 2577 2727 -4 1035 202 87 10 chr4 109830376 109830584 -74458078 - MER58A DNA MER1_type 0 224 1 301 140 0 0 chr4 109830997 109831047 -74457615 + Tigger4(Zombi) DNA MER2_type 2241 2290 -441 2078 91 0 14 chr4 109832540 109832849 -74455813 - AluSc SINE Alu 0 305 1 512 216 48 174 chr4 109833344 109833635 -74455027 - MIR SINE MIR -2 260 7 289 212 0 71 chr4 109834262 109834347 -74454315 + MIR SINE MIR 101 179 -83 2277 88 3 0 chr4 109834819 109835113 -74453549 - AluY SINE Alu -16 295 1 27 0 0 0 chr4 109836291 109836318 -74452344 + AT_rich Low_complexity Low_complexity 1 27 0 227 239 0 28 chr4 109837390 109837461 -74451201 - MLT1K LTR MaLR -1 587 519 21 0 0 0 chr4 109837705 109837726 -74450936 + AT_rich Low_complexity Low_complexity 1 21 0 315 0 0 0 chr4 109837765 109837800 -74450862 + (GA)n Simple_repeat Simple_repeat 2 36 0 686 284 142 26 chr4 109837850 109838202 -74450460 - MLT1I LTR MaLR -16 393 1 210 271 167 0 chr4 109838372 109838468 -74450194 - MIR SINE MIR -1 261 150 1898 117 64 0 chr4 109838596 109838878 -74449784 - AluSx SINE Alu -12 300 1 24 0 0 0 chr4 109838956 109838980 -74449682 + AT_rich Low_complexity Low_complexity 1 24 0 643 291 79 43 chr4 109839021 109839413 -74449249 - HAL1 LINE L1 -19 2488 2083 1081 155 17 6 chr4 109839438 109839648 -74449014 - AluJo SINE Alu 0 348 137 1184 101 6 0 chr4 109839767 109839945 -74448717 + (TCCC)n Simple_repeat Simple_repeat 2 180 0 691 133 16 8 chr4 109839948 109840076 -74448586 + CT-rich Low_complexity Low_complexity 2 130 0 240 111 0 0 chr4 109840126 109840171 -74448491 + (TTCC)n Simple_repeat Simple_repeat 2 46 0 221 211 28 0 chr4 109840222 109840293 -74448369 + CT-rich Low_complexity Low_complexity 1 73 0 1005 250 139 16 chr4 109840293 109840725 -74447937 - HAL1 LINE L1 -581 1926 1442 323 242 16 81 chr4 109840727 109840851 -74447811 - HAL1 LINE L1 -1399 1108 993 2194 118 0 0 chr4 109840859 109841156 -74447506 - AluSg SINE Alu -13 297 1 1694 168 25 3 chr4 109841361 109841646 -74447016 - AluJb SINE Alu -11 301 11 618 283 92 40 chr4 109841704 109842050 -74446612 - HAL1 LINE L1 -1886 621 258 588 280 52 24 chr4 109843056 109843418 -74445244 + LTR33 LTR ERVL 115 513 -8 197 149 43 64 chr4 109844938 109844985 -74443677 - L2 LINE L2 -1 3312 3267 212 262 89 83 chr4 109845189 109845357 -74443305 - L2 LINE L2 -213 3059 2891 705 272 101 26 chr4 109845472 109845700 -74442962 - MIR SINE MIR -10 252 8 575 315 99 29 chr4 109847670 109848083 -74440579 - MLT1L LTR MaLR -23 592 151 25 0 0 0 chr4 109848356 109848381 -74440281 + AT_rich Low_complexity Low_complexity 1 25 0 954 223 15 15 chr4 109848463 109848669 -74439993 + MIR SINE MIR 47 252 -10 841 182 0 0 chr4 109848693 109848825 -74439837 - AluJo SINE Alu -169 133 2 213 39 0 0 chr4 109849015 109849041 -74439621 + (TG)n Simple_repeat Simple_repeat 1 26 0 1589 228 45 11 chr4 109849170 109849548 -74439114 - LTR52 LTR ERVL -19 402 12 335 278 62 45 chr4 109850763 109850939 -74437723 + MIR SINE MIR 84 262 0 3025 109 9 2 chr4 109850995 109851437 -74437225 - L1PA14 LINE L1 -13 6148 5704 202 339 42 34 chr4 109851514 109851632 -74437030 + L2 LINE L2 2716 2834 -480 339 277 58 22 chr4 109851719 109851856 -74436806 - MIR SINE MIR 0 262 121 199 351 18 0 chr4 109852004 109852061 -74436601 + L2 LINE L2 3040 3097 -216 334 294 39 0 chr4 109852489 109852591 -74436071 + L2 LINE L2 3142 3247 -25 337 211 240 0 chr4 109854775 109854879 -74433783 + MER5A DNA MER1_type 42 170 -19 500 287 96 79 chr4 109854891 109855403 -74433259 + MLT1K LTR MaLR 2 565 -23 226 354 10 10 chr4 109855583 109855682 -74432980 + MIR SINE MIR 163 261 -1 787 222 36 28 chr4 109857281 109857508 -74431154 - MER106B DNA MER1_type 0 236 1 551 276 114 31 chr4 109857511 109857739 -74430923 + MIR SINE MIR 12 258 -4 655 240 29 11 chr4 109857846 109858021 -74430641 + MER5B DNA MER1_type 1 178 0 200 250 0 0 chr4 109860346 109860390 -74428272 - L2 LINE L2 -2 3311 3268 263 270 0 0 chr4 109860442 109860516 -74428146 + (CA)n Simple_repeat Simple_repeat 2 75 0 15207 192 19 12 chr4 109860890 109865645 -74423017 + L1PB1 LINE L1 81 4802 -2065 189 0 0 0 chr4 109865645 109865666 -74422996 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 15207 192 19 12 chr4 109865666 109865895 -74422767 + L1PB1 LINE L1 4802 5028 -1839 2166 113 20 0 chr4 109865895 109866196 -74422466 + AluSg1 SINE Alu 1 307 -2 15207 192 19 12 chr4 109866196 109867712 -74420950 + L1PB1 LINE L1 5028 6866 -1 21 0 0 0 chr4 109867870 109867891 -74420771 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 109868026 109868047 -74420615 + AT_rich Low_complexity Low_complexity 1 21 0 34 42 0 0 chr4 109868540 109868588 -74420074 + AT_rich Low_complexity Low_complexity 1 48 0 5113 93 11 11 chr4 109868619 109869658 -74419004 - L1PB2 LINE L1 -8 6143 5225 320 241 94 79 chr4 109869687 109869952 -74418710 - L1ME4a LINE L1 -64 6057 5789 779 182 98 75 chr4 109870048 109870262 -74418400 - MER20 DNA MER1_type 0 219 1 281 246 49 0 chr4 109870332 109870393 -74418269 + MIR SINE MIR 37 100 -162 239 277 67 50 chr4 109871245 109871364 -74417298 + L2 LINE L2 3139 3259 -13 284 301 124 0 chr4 109871502 109871615 -74417047 + L2 LINE L2 3136 3262 -10 10232 25 0 0 chr4 109871793 109873767 -74414895 - L1PA2 LINE L1 -3 6152 4179 1228 154 14 5 chr4 109874469 109874690 -74413972 - Tigger1 DNA MER2_type -2172 246 24 1442 203 57 3 chr4 109875319 109875620 -74413042 - MER58B DNA MER1_type -1 340 24 536 87 87 0 chr4 109875631 109875723 -74412939 + MER53 DNA DNA 90 189 0 2709 260 58 22 chr4 109876209 109877336 -74411326 - L2 LINE L2 0 3313 2139 250 283 33 0 chr4 109877755 109877792 -74410870 + (TATATG)n Simple_repeat Simple_repeat 2 36 -89 201 39 0 0 chr4 109877792 109877818 -74410844 + (CA)n Simple_repeat Simple_repeat 2 27 0 250 283 33 0 chr4 109877818 109877900 -74410762 + (TATATG)n Simple_repeat Simple_repeat 36 125 0 207 0 0 0 chr4 109877964 109877987 -74410675 + (CAAAAA)n Simple_repeat Simple_repeat 4 26 0 2158 114 3 0 chr4 109878071 109878361 -74410301 + AluSg SINE Alu 1 291 -19 1067 132 137 5 chr4 109878385 109878582 -74410080 + MLT2D LTR ERVL 2 224 -190 2387 222 19 2 chr4 109879377 109879855 -74408807 - MLT1F LTR MaLR 0 542 57 293 191 16 16 chr4 109879884 109879947 -74408715 - L2 LINE L2 0 3272 3210 979 264 16 119 chr4 109880358 109880862 -74407800 - L2 LINE L2 0 3313 2862 4480 263 138 47 chr4 109880865 109881302 -74407360 - L2 LINE L2 -1024 2290 1894 2239 107 0 7 chr4 109881302 109881610 -74407052 - AluSg SINE Alu -2 308 3 4480 263 138 47 chr4 109881610 109882415 -74406247 - L2 LINE L2 -1420 1894 1164 1740 199 0 3 chr4 109882415 109882722 -74405940 + AluJo SINE Alu 1 306 -6 4480 263 138 47 chr4 109882722 109883543 -74405119 - L2 LINE L2 -2150 1164 38 436 253 175 7 chr4 109883655 109883809 -74404853 + MER5A DNA MER1_type 10 189 0 270 133 83 17 chr4 109884652 109884712 -74403950 + MIR SINE MIR 43 106 -102 2198 124 0 3 chr4 109885187 109885485 -74403177 - AluSx SINE Alu -15 297 1 31 0 0 0 chr4 109885820 109885851 -74402811 + AT_rich Low_complexity Low_complexity 1 31 0 15441 84 25 0 chr4 109887238 109890115 -74398547 + L1PA7 LINE L1 3244 6147 -7 225 269 0 0 chr4 109890174 109890241 -74398421 + A-rich Low_complexity Low_complexity 1 67 0 22 0 0 0 chr4 109890604 109890626 -74398036 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr4 109890736 109890773 -74397889 + AT_rich Low_complexity Low_complexity 1 37 0 2213 100 0 35 chr4 109891376 109891695 -74396967 - AluSg1 SINE Alu -1 308 1 300 82 17 9 chr4 109892059 109892118 -74396544 + L1PA10 LINE L1 6116 6172 0 396 75 0 0 chr4 109892417 109892470 -74396192 - MLT2D LTR ERVL 0 520 468 222 255 0 0 chr4 109892472 109892566 -74396096 + (TA)n Simple_repeat Simple_repeat 2 95 0 1688 195 82 3 chr4 109892575 109892903 -74395759 - MLT2D LTR ERVL -59 355 2 2243 97 0 53 chr4 109892927 109893246 -74395416 - AluSg SINE Alu -6 304 3 771 306 32 8 chr4 109893854 109894106 -74394556 - MIR SINE MIR -3 259 2 21 0 0 0 chr4 109894401 109894422 -74394240 + AT_rich Low_complexity Low_complexity 1 21 0 204 149 0 0 chr4 109895545 109895592 -74393070 + (CAAAC)n Simple_repeat Simple_repeat 4 50 0 223 341 61 8 chr4 109896515 109896647 -74392015 + MIR SINE MIR 117 255 -7 1921 144 52 72 chr4 109897016 109897420 -74391242 + MSTD LTR MaLR 1 396 0 2857 229 75 18 chr4 109897785 109898509 -74390153 - MER21B LTR ERV1 -1 862 98 188 178 0 22 chr4 109899461 109899506 -74389156 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 468 333 55 13 chr4 109900077 109900314 -74388348 + L3 LINE CR1 990 1236 -341 290 240 90 20 chr4 109900335 109900435 -74388227 + L3 LINE CR1 1468 1574 -3 1879 117 54 17 chr4 109900824 109901122 -74387540 - AluY SINE Alu 0 311 3 21 36 0 0 chr4 109902644 109902672 -74385990 + AT_rich Low_complexity Low_complexity 1 28 0 33 43 0 0 chr4 109903054 109903101 -74385561 + AT_rich Low_complexity Low_complexity 1 47 0 24 32 0 0 chr4 109904171 109904202 -74384460 + AT_rich Low_complexity Low_complexity 1 31 0 483 294 71 0 chr4 109905372 109905498 -74383164 - L2 LINE L2 -4 3268 3134 25 0 0 0 chr4 109905770 109905795 -74382867 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 109905869 109905891 -74382771 + AT_rich Low_complexity Low_complexity 1 22 0 251 195 53 97 chr4 109906508 109906621 -74382041 - MER94 DNA DNA -4 130 23 628 217 56 31 chr4 109906944 109907105 -74381557 - MIR SINE MIR -2 260 96 21 36 0 0 chr4 109907465 109907493 -74381169 + AT_rich Low_complexity Low_complexity 1 28 0 704 285 51 9 chr4 109907745 109907959 -74380703 + MIR SINE MIR 12 234 -28 21 71 0 0 chr4 109908346 109908388 -74380274 + AT_rich Low_complexity Low_complexity 1 42 0 28 29 0 0 chr4 109908903 109908938 -74379724 + AT_rich Low_complexity Low_complexity 1 35 0 494 221 0 0 chr4 109908945 109909031 -74379631 - FRAM SINE Alu -32 144 59 196 343 148 18 chr4 109909867 109910036 -74378626 - MIR SINE MIR 0 262 72 5836 113 12 6 chr4 109910532 109911808 -74376854 + L1PA16 LINE L1 4883 6157 -9 32 43 0 0 chr4 109912170 109912216 -74376446 + AT_rich Low_complexity Low_complexity 1 46 0 337 192 14 27 chr4 109914766 109914839 -74373823 - L2 LINE L2 -1 3271 3200 251 163 0 0 chr4 109914913 109914956 -74373706 - L2 LINE L2 -92 3221 3179 212 382 116 18 chr4 109915250 109915761 -74372901 + L2 LINE L2 2331 2891 -423 254 250 10 70 chr4 109915803 109915903 -74372759 + MIR SINE MIR 5 98 -164 315 71 0 0 chr4 109915903 109915945 -74372717 + (A)n Simple_repeat Simple_repeat 1 42 0 2424 88 0 0 chr4 109916147 109916454 -74372208 - AluSg SINE Alu -3 307 1 442 283 94 17 chr4 109916588 109916770 -74371892 + MIR SINE MIR 8 197 -65 21 57 0 0 chr4 109918484 109918519 -74370143 + AT_rich Low_complexity Low_complexity 1 35 0 418 223 50 132 chr4 109920386 109920606 -74368056 + L2 LINE L2 3104 3305 -8 446 289 105 0 chr4 109920866 109921018 -74367644 + MER63A DNA MER1_type 7 174 -36 316 197 0 14 chr4 109921358 109921429 -74367233 + LTR16A LTR ERVL 309 378 -72 204 40 0 0 chr4 109921627 109921652 -74367010 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1878 90 30 4 chr4 109921652 109921918 -74366744 - AluSc SINE Alu -36 273 1 183 80 0 0 chr4 109921956 109921981 -74366681 + (TC)n Simple_repeat Simple_repeat 2 26 0 225 217 235 52 chr4 109922008 109922123 -74366539 + L2 LINE L2 3173 3308 -5 9619 82 84 0 chr4 109922439 109924534 -74364128 + L1PA7 LINE L1 3994 6154 0 697 370 55 33 chr4 109924747 109925360 -74363302 - L2 LINE L2 -371 2943 2317 314 358 40 28 chr4 109925377 109925553 -74363109 + MIR SINE MIR 31 208 -54 22 35 0 0 chr4 109926676 109926705 -74361957 + AT_rich Low_complexity Low_complexity 1 29 0 201 281 0 0 chr4 109927392 109927449 -74361213 + L2 LINE L2 2312 2368 -946 233 380 54 38 chr4 109927456 109927846 -74360816 + L2 LINE L2 2595 2987 -285 208 241 86 35 chr4 109927921 109927979 -74360683 + L2 LINE L2 3210 3270 -2 30 93 0 0 chr4 109929077 109929163 -74359499 + AT_rich Low_complexity Low_complexity 1 86 0 2045 143 0 13 chr4 109929248 109929562 -74359100 + AluSx SINE Alu 2 311 -1 836 175 0 0 chr4 109931045 109931188 -74357474 + FLAM_C SINE Alu 1 143 0 578 211 26 0 chr4 109932022 109932136 -74356526 - L2 LINE L2 -1 3312 3196 460 271 85 0 chr4 109932182 109932300 -74356362 - MER69 DNA AcHobo -2398 128 1 302 346 39 42 chr4 109932439 109932699 -74355963 + L2 LINE L2 2887 3145 -168 1378 135 117 0 chr4 109932706 109932928 -74355734 - AluSc SINE Alu -12 297 50 361 343 55 20 chr4 109932944 109933090 -74355572 + L2 LINE L2 3122 3272 0 279 236 20 19 chr4 109935388 109935478 -74353184 + CT-rich Low_complexity Low_complexity 1 90 0 334 200 0 78 chr4 109936023 109936113 -74352549 - L2 LINE L2 -1 3271 3189 316 325 51 2 chr4 109936171 109936344 -74352318 + MIR SINE MIR 30 209 -53 36 40 0 0 chr4 109936430 109936480 -74352182 + AT_rich Low_complexity Low_complexity 1 50 0 328 141 0 31 chr4 109938269 109938333 -74350329 + L1MC1 LINE L1 6145 6206 -127 * 986 146 0 6 chr4 109938315 109938480 -74350182 - L1MC/D LINE L1 -884 5449 5286 42900 30 21 1 chr4 109938488 109944518 -74344144 - L1HS LINE L1 0 6155 3 2779 222 31 10 chr4 109944518 109945231 -74343431 - L1MC/D LINE L1 -849 5297 4570 848 286 48 13 chr4 109945259 109945593 -74343069 + MER21B LTR ERV1 13 378 -485 581 313 43 26 chr4 109945682 109945915 -74342747 - MLT1K LTR MaLR 0 588 352 1004 320 74 11 chr4 109945919 109946262 -74342400 + L1MEc LINE L1 1039 1359 -5037 429 116 0 0 chr4 109946262 109946331 -74342331 + (CA)n Simple_repeat Simple_repeat 2 70 0 1004 320 74 11 chr4 109946331 109946716 -74341946 + L1MEc LINE L1 1359 1813 -4583 1711 275 76 35 chr4 109947017 109948263 -74340399 + L1MEc LINE L1 2210 3514 -2701 560 233 94 78 chr4 109948569 109948670 -74339992 + MER5A DNA MER1_type 7 115 -74 1400 175 39 52 chr4 109948670 109949042 -74339620 - AluJo SINE Alu 0 368 1 560 233 94 78 chr4 109949042 109949119 -74339543 + MER5A DNA MER1_type 115 189 0 2567 226 42 10 chr4 109949351 109949949 -74338713 - MLT1E2 LTR MaLR -9 617 1 205 240 0 20 chr4 109951280 109951330 -74337332 + L2 LINE L2 2598 2646 -668 298 376 16 0 chr4 109951803 109951928 -74336734 - L2 LINE L2 -7 3306 3180 23 33 0 0 chr4 109952074 109952104 -74336558 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 109952242 109952263 -74336399 + AT_rich Low_complexity Low_complexity 1 21 0 188 287 210 13 chr4 109952517 109952674 -74335988 - L2 LINE L2 -5 3308 3121 360 327 25 43 chr4 109953038 109953200 -74335462 + MIR SINE MIR 11 169 -93 263 213 13 0 chr4 109954299 109954374 -74334288 + GA-rich Low_complexity Low_complexity 1 76 0 22 35 0 0 chr4 109956127 109956156 -74332506 + AT_rich Low_complexity Low_complexity 1 29 0 1556 148 49 3 chr4 109956637 109956941 -74331721 - MER33 DNA MER1_type -1 323 6 307 174 0 41 chr4 109957669 109957767 -74330895 + A-rich Low_complexity Low_complexity 4 97 0 186 43 0 0 chr4 109960082 109960105 -74328557 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 186 103 0 0 chr4 109960773 109960802 -74327860 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 468 0 0 0 chr4 109961259 109961311 -74327351 + (CA)n Simple_repeat Simple_repeat 2 53 0 224 259 17 0 chr4 109961721 109961779 -74326883 - L2 LINE L2 -4 3268 3210 842 275 0 14 chr4 109962291 109962498 -74326164 - MER63A DNA MER1_type -6 204 1 28 0 0 0 chr4 109963455 109963483 -74325179 + AT_rich Low_complexity Low_complexity 1 28 0 1747 168 14 20 chr4 109963489 109963786 -74324876 + AluJb SINE Alu 1 295 -17 1637 128 23 4 chr4 109963786 109964044 -74324618 + AluJb SINE Alu 32 294 -18 217 143 36 18 chr4 109964068 109964124 -74324538 + (CAAA)n Simple_repeat Simple_repeat 1 57 0 1262 134 13 13 chr4 109964283 109964515 -74324147 + L1MA4 LINE L1 6068 6299 -1 1481 160 11 11 chr4 109964700 109964969 -74323693 + L1PA16 LINE L1 5893 6161 -5 2246 91 3 3 chr4 109965717 109966013 -74322649 - AluSg SINE Alu -14 296 1 208 218 26 13 chr4 109966669 109966747 -74321915 + (TA)n Simple_repeat Simple_repeat 2 80 0 184 308 197 43 chr4 109966860 109966977 -74321685 + MIR3 SINE MIR 64 198 -10 1448 202 158 16 chr4 109967400 109967906 -74320756 - MER69 DNA AcHobo 0 2526 1949 1531 163 58 22 chr4 109967906 109968183 -74320479 - AluJb SINE Alu -4 308 22 239 337 20 10 chr4 109968212 109968310 -74320352 - MER69 DNA AcHobo -1127 99 1 408 377 26 0 chr4 109968332 109968486 -74320176 + MIR SINE MIR 31 188 -74 221 282 165 0 chr4 109968884 109968987 -74319675 - MIR SINE MIR -70 192 73 942 282 199 25 chr4 109969891 109970381 -74318281 + L2 LINE L2 2081 2485 -828 835 186 25 0 chr4 109970381 109970542 -74318120 - FRAM SINE Alu -1 165 1 942 282 199 25 chr4 109970542 109970744 -74317918 + L2 LINE L2 2485 2990 -323 2142 91 0 0 chr4 109970746 109971021 -74317641 + AluSg SINE Alu 1 275 -35 333 68 0 0 chr4 109971168 109971212 -74317450 + (A)n Simple_repeat Simple_repeat 1 44 0 462 120 0 0 chr4 109971414 109971489 -74317173 - AluS SINE Alu -6 303 229 253 309 49 12 chr4 109971720 109971801 -74316861 - MER5A DNA MER1_type -3 186 103 291 294 63 14 chr4 109972016 109972159 -74316503 - MER103 DNA DNA -9 157 8 411 57 0 0 chr4 109973030 109973083 -74315579 + AluSp/q SINE Alu 238 290 -23 7250 75 2 2 chr4 109973083 109974818 -74313844 - L1PA6 LINE L1 -16 6138 4403 892 294 49 25 chr4 109975068 109975394 -74313268 - L2 LINE L2 -3 3310 2977 434 290 33 43 chr4 109976024 109976324 -74312338 - L1ME LINE L1 -558 5606 5308 2760 211 32 62 chr4 109977920 109978758 -74309904 + L1ME1 LINE L1 5345 6161 -5 296 346 29 0 chr4 109978957 109979061 -74309601 - MIR SINE MIR -26 236 130 1956 121 61 7 chr4 109980829 109981126 -74307536 - AluSq SINE Alu 0 313 1 190 204 91 0 chr4 109982681 109982725 -74305937 + MIR SINE MIR 95 142 -66 353 289 181 0 chr4 109985347 109985496 -74303166 - MIR SINE MIR -6 256 81 31 59 0 35 chr4 109985539 109985624 -74303038 + AT_rich Low_complexity Low_complexity 1 82 0 497 281 5 11 chr4 109986780 109986965 -74301697 - L1MC4 LINE L1 -152 7890 7707 1667 277 62 30 chr4 109987545 109988195 -74300467 - L1MC5 LINE L1 -527 7495 6919 1656 270 42 36 chr4 109988195 109988784 -74299878 + MLT1E LTR MaLR 1 593 0 1667 277 62 30 chr4 109988784 109989009 -74299653 - L1MC5 LINE L1 -1103 6919 6703 25 31 0 0 chr4 109990009 109990041 -74298621 + AT_rich Low_complexity Low_complexity 1 32 0 225 136 17 68 chr4 109991899 109991958 -74296704 + CT-rich Low_complexity Low_complexity 5 60 0 2881 80 61 0 chr4 109992680 109993091 -74295571 - L1PA13 LINE L1 -11 6152 5717 390 286 61 16 chr4 109993641 109994043 -74294619 - L1ME LINE L1 -342 5779 5332 22 35 0 0 chr4 109994089 109994118 -74294544 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr4 109994330 109994356 -74294306 + AT_rich Low_complexity Low_complexity 1 26 0 463 148 64 0 chr4 109994468 109994741 -74293921 + (TA)n Simple_repeat Simple_repeat 1 290 0 2065 112 4 0 chr4 109995073 109995350 -74293312 + AluSg SINE Alu 1 278 -32 315 0 0 0 chr4 109995350 109995385 -74293277 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 26 50 0 0 chr4 109995819 109995859 -74292803 + AT_rich Low_complexity Low_complexity 1 40 0 1140 208 88 20 chr4 109996133 109996475 -74292187 + MLT1A1 LTR MaLR 1 365 0 2176 117 0 25 chr4 109997995 109998312 -74290350 + AluSq SINE Alu 1 309 -4 660 264 12 12 chr4 109998720 109998887 -74289775 + MER63A DNA MER1_type 44 210 0 1210 262 89 9 chr4 109999890 110000306 -74288356 + MLT1J LTR MaLR 1 431 -19 6808 130 53 14 chr4 110000417 110001566 -74287096 - Tigger3b DNA MER2_type -37 1194 1 2109 118 3 7 chr4 110002479 110002784 -74285878 - AluSg SINE Alu -4 306 3 22 0 0 0 chr4 110003412 110003434 -74285228 + AT_rich Low_complexity Low_complexity 1 22 0 277 261 243 0 chr4 110003770 110003881 -74284781 - L2 LINE L2 -16 3297 3160 2562 125 0 0 chr4 110004311 110004670 -74283992 - THE1B LTR MaLR -5 359 1 250 378 181 4 chr4 110005309 110005563 -74283099 - L3 LINE CR1 -1231 346 48 21 36 0 0 chr4 110006290 110006318 -74282344 + AT_rich Low_complexity Low_complexity 1 28 0 2549 196 15 2 chr4 110006919 110007374 -74281288 + LTR32 LTR ERVL 11 471 0 21 36 0 0 chr4 110007382 110007410 -74281252 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 110008109 110008130 -74280532 + AT_rich Low_complexity Low_complexity 1 21 0 181 383 123 34 chr4 110008497 110008732 -74279930 + L2 LINE L2 2565 2820 -494 265 279 13 13 chr4 110008986 110009065 -74279597 + L1ME3A LINE L1 5623 5701 -461 877 263 81 47 chr4 110009156 110009567 -74279095 + L1ME3A LINE L1 5710 6136 -34 540 277 11 11 chr4 110010698 110010875 -74277787 + MER5B DNA MER1_type 1 177 -1 9148 86 28 12 chr4 110011325 110012591 -74276071 + HSMAR1 DNA Mariner 1 1287 0 1216 135 0 0 chr4 110012603 110012781 -74275881 + AluSg/x SINE Alu 133 310 -2 468 272 101 25 chr4 110012900 110013058 -74275604 - L2 LINE L2 -2881 433 264 1883 131 107 3 chr4 110013509 110013845 -74274817 - THE1C LTR MaLR -4 371 1 327 305 191 50 chr4 110014219 110014483 -74274179 + L1 LINE L1 4055 4280 -1866 1604 203 21 0 chr4 110014483 110014774 -74273888 + AluJb SINE Alu 1 297 -15 327 305 191 50 chr4 110014774 110014948 -74273714 + L1 LINE L1 4280 4555 -1591 673 210 6 17 chr4 110015257 110015433 -74273229 - LTR41 LTR ERVL -15 758 585 1764 158 3 14 chr4 110015658 110015943 -74272719 + AluJb SINE Alu 1 282 -30 499 244 23 79 chr4 110015972 110016179 -74272483 - LTR41 LTR ERVL -575 220 1 327 288 27 27 chr4 110016295 110016406 -74272256 - MLT1J2 LTR MaLR -339 111 1 2172 90 0 13 chr4 110017870 110018170 -74270492 - AluSq SINE Alu -15 298 3 642 329 58 26 chr4 110018258 110018568 -74270094 + MLT1J2 LTR MaLR 1 320 -130 238 344 129 0 chr4 110018660 110018753 -74269909 - MIR SINE MIR -67 141 37 4912 166 50 23 chr4 110018966 110020472 -74268190 - L1MB3 LINE L1 0 6183 4647 1499 248 77 20 chr4 110020928 110021504 -74267158 - MLT1E LTR MaLR 0 593 3 2597 183 48 70 chr4 110021684 110022394 -74266268 - LTR8A LTR ERV1 0 727 34 402 93 67 13 chr4 110022629 110022779 -74265883 + (TA)n Simple_repeat Simple_repeat 1 158 0 222 91 0 0 chr4 110022778 110022811 -74265851 + (GA)n Simple_repeat Simple_repeat 2 34 0 * 309 367 133 0 chr4 110025126 110025276 -74263386 + L2 LINE L2 3102 3271 -1 23 54 0 0 chr4 110025341 110025378 -74263284 + AT_rich Low_complexity Low_complexity 1 37 0 1082 172 11 0 chr4 110027929 110028115 -74260547 + MER5A DNA MER1_type 2 189 0 253 340 30 20 chr4 110028179 110028279 -74260383 - MIR SINE MIR -77 131 31 2448 68 0 31 chr4 110028425 110028746 -74259916 - AluY SINE Alu 0 311 1 1781 241 100 29 chr4 110028851 110029402 -74259260 - MER77 LTR ERV1 -4 601 54 237 83 0 0 chr4 110031452 110031488 -74257174 + (TC)n Simple_repeat Simple_repeat 1 36 0 426 20 0 0 chr4 110031488 110031539 -74257123 + (CA)n Simple_repeat Simple_repeat 1 51 0 395 271 231 20 chr4 110032791 110032990 -74255672 + MIR SINE MIR 5 245 -17 25 0 0 0 chr4 110033677 110033702 -74254960 + AT_rich Low_complexity Low_complexity 1 25 0 2176 102 0 44 chr4 110034711 110035026 -74253636 + AluSq SINE Alu 1 301 -12 355 312 130 0 chr4 110035410 110035657 -74253005 - L1ME4a LINE L1 -229 5892 5614 2028 130 52 19 chr4 110035789 110036151 -74252511 + THE1C LTR MaLR 1 374 -1 744 244 45 10 chr4 110036182 110036383 -74252279 - MER3 DNA MER1_type 0 209 2 563 283 207 33 chr4 110036610 110037272 -74251390 - L1ME4a LINE L1 -852 5294 4518 429 289 48 16 chr4 110037312 110037499 -74251163 - L3 LINE CR1 -767 810 618 2314 134 67 8 chr4 110037703 110038105 -74250557 + MSTB LTR MaLR 1 426 0 1125 191 86 0 chr4 110038900 110039120 -74249542 - MER8 DNA MER2_type 0 239 1 413 208 271 35 chr4 110041259 110041403 -74247259 + MER45A DNA AcHobo 1 178 0 38 22 0 0 chr4 110041802 110041847 -74246815 + AT_rich Low_complexity Low_complexity 1 45 0 331 279 63 18 chr4 110046943 110047054 -74241608 - MIR SINE MIR -133 129 14 672 231 58 17 chr4 110047695 110048031 -74240631 + MER110A LTR ERV1 94 491 0 243 0 0 0 chr4 110048100 110048127 -74240535 + (CA)n Simple_repeat Simple_repeat 1 27 0 349 181 12 36 chr4 110048132 110048215 -74240447 - MIR SINE MIR -113 149 69 358 264 75 28 chr4 110049617 110049723 -74238939 - MER5A DNA MER1_type -65 124 14 22 35 0 0 chr4 110050910 110050939 -74237723 + AT_rich Low_complexity Low_complexity 1 29 0 267 277 12 36 chr4 110051167 110051250 -74237412 - MER5A DNA MER1_type -74 115 35 * 286 259 24 35 chr4 110051179 110051264 -74237398 + MER5A DNA MER1_type 96 179 -10 28 48 0 0 chr4 110055161 110055203 -74233459 + AT_rich Low_complexity Low_complexity 1 42 0 496 188 0 0 chr4 110056474 110056559 -74232103 - Tigger7 DNA MER2_type 0 2491 2407 3052 176 6 25 chr4 110056570 110057098 -74231564 - Tigger7 DNA MER2_type -212 521 4 3165 158 43 32 chr4 110057102 110057751 -74230911 - L1MB4 LINE L1 -83 6097 5438 1933 132 20 13 chr4 110057751 110058054 -74230608 - AluSq SINE Alu -8 305 1 3165 158 43 32 chr4 110058054 110058098 -74230564 - L1MB4 LINE L1 -742 5438 5396 453 233 0 11 chr4 110058411 110058501 -74230161 + L2 LINE L2 3225 3313 0 23 0 0 0 chr4 110058609 110058632 -74230030 + AT_rich Low_complexity Low_complexity 1 23 0 2129 119 0 13 chr4 110058830 110059133 -74229529 + AluSx SINE Alu 1 299 -13 738 224 59 12 chr4 110060513 110060683 -74227979 + MER45A DNA AcHobo 1 178 0 378 42 0 0 chr4 110061121 110061169 -74227493 + (GA)n Simple_repeat Simple_repeat 1 48 0 324 164 0 0 chr4 110061637 110061704 -74226958 + GA-rich Low_complexity Low_complexity 2 68 0 247 146 0 0 chr4 110063495 110063536 -74225126 + MER45A DNA AcHobo 138 178 0 833 294 20 4 chr4 110065175 110065427 -74223235 + MIR SINE MIR 1 256 -6 27 0 0 0 chr4 110065432 110065459 -74223203 + AT_rich Low_complexity Low_complexity 1 27 0 881 245 134 36 chr4 110065584 110066065 -74222597 + MLT1F LTR MaLR 7 542 0 378 306 182 45 chr4 110066250 110066541 -74222121 - L2 LINE L2 -29 3284 2954 366 256 61 78 chr4 110066631 110066861 -74221801 - L2 LINE L2 -460 2854 2629 194 176 20 0 chr4 110067090 110067141 -74221521 + (TA)n Simple_repeat Simple_repeat 1 52 0 245 302 32 16 chr4 110067192 110067318 -74221344 + L1MC4 LINE L1 7914 8041 -1 16388 202 41 29 chr4 110067897 110068545 -74220117 + L1PA15 LINE L1 1047 1686 -5130 696 213 0 22 chr4 110068545 110068681 -74219981 - FLAM_C SINE Alu 0 133 1 16388 202 41 29 chr4 110068681 110073737 -74214925 + L1PA15 LINE L1 1686 6800 -16 571 106 0 0 chr4 110074844 110074929 -74213733 - L1MA3 LINE L1 -6 6299 6215 2558 221 56 3 chr4 110074929 110075594 -74213068 - L1 LINE L1 -2461 3685 2986 21 36 0 0 chr4 110077734 110077762 -74210900 + AT_rich Low_complexity Low_complexity 1 28 0 504 0 0 0 chr4 110078088 110078144 -74210518 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 282 286 13 0 chr4 110078162 110078239 -74210423 - L2 LINE L2 -5 3267 3190 229 258 136 15 chr4 110078272 110078404 -74210258 + MER113 DNA MER1_type? 289 436 -85 292 293 12 0 chr4 110079327 110079409 -74209253 - L2 LINE L2 -33 3280 3198 * 376 247 102 81 chr4 110079404 110079431 -74209231 + MIR SINE MIR 73 98 -164 4748 22 9 0 chr4 110079431 110079987 -74208675 - L1PA4 LINE L1 0 6155 5595 376 247 102 81 chr4 110079987 110080145 -74208517 + MIR SINE MIR 98 262 0 222 329 0 13 chr4 110082027 110082106 -74206556 + L2 LINE L2 3228 3305 -8 30 0 0 0 chr4 110082648 110082678 -74205984 + AT_rich Low_complexity Low_complexity 1 30 0 1976 123 0 3 chr4 110082722 110083006 -74205656 - AluSx SINE Alu -29 283 1 22 80 0 0 chr4 110083275 110083325 -74205337 + AT_rich Low_complexity Low_complexity 1 50 0 528 321 41 15 chr4 110083336 110083439 -74205223 + L2 LINE L2 2677 2776 -538 396 266 84 75 chr4 110083439 110083773 -74204889 - MER46C DNA MER2_type 0 338 2 528 321 41 15 chr4 110083773 110083865 -74204797 + L2 LINE L2 2776 2877 -437 421 264 99 60 chr4 110083833 110084034 -74204628 + L2 LINE L2 3092 3300 -13 * 1196 160 174 24 chr4 110084171 110084458 -74204204 + MER44D DNA MER2_type 7 606 -3 217 230 29 68 chr4 110084841 110084959 -74203703 - L2 LINE L2 -37 3276 3102 414 100 0 0 chr4 110084965 110085025 -74203637 + (TG)n Simple_repeat Simple_repeat 1 60 0 212 229 0 36 chr4 110085627 110085710 -74202952 + (TTA)n Simple_repeat Simple_repeat 3 82 0 22 35 0 0 chr4 110086212 110086241 -74202421 + AT_rich Low_complexity Low_complexity 1 29 0 272 330 174 33 chr4 110086444 110087292 -74201370 + L2 LINE L2 988 1955 -1359 267 222 139 0 chr4 110089058 110089130 -74199532 - L2 LINE L2 -9 3304 3223 215 30 0 30 chr4 110091564 110091597 -74197065 + (CA)n Simple_repeat Simple_repeat 2 33 0 319 253 0 0 chr4 110091648 110091731 -74196931 - L1 LINE L1 -3714 2432 2350 27 29 0 0 chr4 110091821 110091855 -74196807 + AT_rich Low_complexity Low_complexity 1 34 0 27 29 0 0 chr4 110091885 110091919 -74196743 + AT_rich Low_complexity Low_complexity 1 34 0 717 293 62 9 chr4 110092846 110093071 -74195591 + MIR SINE MIR 9 245 -17 456 291 93 20 chr4 110094436 110094683 -74193979 - L1ME LINE L1 -319 5802 5538 323 279 81 12 chr4 110094776 110094937 -74193725 - L1ME LINE L1 -2381 5427 5256 26 30 0 0 chr4 110094941 110094974 -74193688 + AT_rich Low_complexity Low_complexity 1 33 0 231 285 49 28 chr4 110095036 110095180 -74193482 - L1ME LINE L1 -3324 2822 2676 23 54 0 0 chr4 110096019 110096056 -74192606 + AT_rich Low_complexity Low_complexity 1 37 0 2065 123 0 10 chr4 110096743 110097043 -74191619 + AluSx SINE Alu 1 297 -15 678 288 68 0 chr4 110099228 110099405 -74189257 - MIR SINE MIR -69 193 5 26 50 0 0 chr4 110100913 110100953 -74187709 + AT_rich Low_complexity Low_complexity 1 40 0 485 349 192 7 chr4 110102637 110103044 -74185618 - L3 LINE CR1 -2 1575 1094 229 291 109 100 chr4 110103103 110103443 -74185219 - L3 LINE CR1 -493 1084 742 330 240 40 104 chr4 110103551 110103676 -74184986 + L2 LINE L2 3197 3313 0 335 298 101 21 chr4 110104531 110104719 -74183943 - LTR67 LTR ERVL 0 557 355 249 298 53 103 chr4 110105103 110105385 -74183277 - L2 LINE L2 -58 3255 2988 21 57 0 0 chr4 110105500 110105535 -74183127 + AT_rich Low_complexity Low_complexity 1 35 0 196 414 54 27 chr4 110105809 110105920 -74182742 - L3 LINE CR1 -1437 140 27 288 77 0 0 chr4 110106045 110106084 -74182578 + (TG)n Simple_repeat Simple_repeat 2 40 0 624 78 16 61 chr4 110106138 110106382 -74182280 + (TA)n Simple_repeat Simple_repeat 1 233 0 205 241 35 0 chr4 110106742 110106800 -74181862 + T-rich Low_complexity Low_complexity 2 61 0 220 393 62 21 chr4 110106890 110107035 -74181627 - L2 LINE L2 -5 3267 3117 326 68 0 0 chr4 110107421 110107465 -74181197 - L1PA4 LINE L1 -622 5533 5490 5227 29 0 2 chr4 110107465 110108074 -74180588 + L1PA4 LINE L1 5535 6148 -7 1834 97 0 0 chr4 110108136 110108374 -74180288 + AluSg SINE Alu 47 284 -26 347 0 0 23 chr4 110108377 110108421 -74180241 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 183 129 0 0 chr4 110108922 110108953 -74179709 + (CAAGG)n Simple_repeat Simple_repeat 5 35 0 237 244 33 11 chr4 110109205 110109295 -74179367 + (TA)n Simple_repeat Simple_repeat 1 92 0 266 0 29 0 chr4 110110057 110110091 -74178571 + (CA)n Simple_repeat Simple_repeat 2 36 0 579 336 63 5 chr4 110110149 110110372 -74178290 - MIR SINE MIR -12 250 15 2034 82 4 0 chr4 110110794 110111050 -74177612 + AluSp SINE Alu 1 257 -56 239 62 0 0 chr4 110111084 110111116 -74177546 + AluSp SINE Alu 257 288 -15 582 275 72 19 chr4 110111317 110111524 -74177138 - L2 LINE L2 -1 3312 3095 1334 194 36 0 chr4 110112205 110112457 -74176205 + AluJb SINE Alu 1 261 -51 22 56 0 0 chr4 110112623 110112659 -74176003 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr4 110112853 110112874 -74175788 + AT_rich Low_complexity Low_complexity 1 21 0 1474 173 45 42 chr4 110112904 110113216 -74175446 + AluSp SINE Alu 1 313 0 545 246 161 29 chr4 110113436 110113716 -74174946 + Charlie7 DNA MER1_type 1 317 -2295 1316 241 115 34 chr4 110113719 110114329 -74174333 + Charlie7 DNA MER1_type 1429 2087 -525 284 235 289 58 chr4 110114432 110114726 -74173936 + Charlie7 DNA MER1_type 2119 2480 -132 3035 194 47 2 chr4 110114784 110115404 -74173258 - L1MB5 LINE L1 -12 6162 5515 265 323 98 15 chr4 110115969 110116102 -74172560 - MIR SINE MIR -71 191 48 23 0 0 0 chr4 110116521 110116544 -74172118 + AT_rich Low_complexity Low_complexity 1 23 0 203 317 98 41 chr4 110116945 110117068 -74171594 + L2 LINE L2 3162 3291 -22 875 196 17 0 chr4 110117390 110117563 -74171099 + FRAM SINE Alu 1 176 0 420 318 132 11 chr4 110118105 110118294 -74170368 + MIR SINE MIR 16 227 -35 262 115 39 0 chr4 110119842 110119894 -74168768 + CT-rich Low_complexity Low_complexity 1 54 0 374 282 101 48 chr4 110119931 110120119 -74168543 + MIR SINE MIR 17 214 -48 211 278 0 42 chr4 110120262 110120334 -74168328 - MIR SINE MIR -99 163 95 856 213 157 62 chr4 110121247 110121585 -74167077 - L1MC5 LINE L1 -895 7066 6697 21 0 0 0 chr4 110122455 110122476 -74166186 + AT_rich Low_complexity Low_complexity 1 21 0 1680 195 21 18 chr4 110122786 110123114 -74165548 - MER58B DNA MER1_type -4 337 9 785 170 7 0 chr4 110123349 110123490 -74165172 - AluJb SINE Alu 0 312 171 1873 154 3 3 chr4 110123551 110123863 -74164799 - AluJb SINE Alu 0 312 1 180 0 0 0 chr4 110123968 110123988 -74164674 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 293 297 18 0 chr4 110124219 110124330 -74164332 + (TA)n Simple_repeat Simple_repeat 1 113 0 662 219 79 66 chr4 110124845 110125073 -74163589 - MER112 DNA MER1_type -6 254 24 916 188 78 0 chr4 110125717 110125909 -74162753 - L1PA16 LINE L1 0 6166 5960 749 143 48 0 chr4 110127918 110128044 -74160618 + AluSq/x SINE Alu 1 132 -180 36 40 0 0 chr4 110128142 110128192 -74160470 + AT_rich Low_complexity Low_complexity 1 50 0 186 310 129 26 chr4 110128201 110128317 -74160345 - L2 LINE L2 -11 3261 3134 198 292 0 83 chr4 110129077 110129173 -74159489 + MIR SINE MIR 104 191 -71 22 0 0 0 chr4 110129504 110129526 -74159136 + AT_rich Low_complexity Low_complexity 1 22 0 219 273 68 23 chr4 110130034 110130122 -74158540 + L2 LINE L2 3222 3313 0 1884 146 7 3 chr4 110130406 110130700 -74157962 + AluSx SINE Alu 1 295 -17 279 54 0 0 chr4 110131590 110131627 -74157035 + (TA)n Simple_repeat Simple_repeat 2 38 0 307 267 47 87 chr4 110132440 110132590 -74156072 + L2 LINE L2 2613 2756 -558 393 299 133 13 chr4 110132660 110133192 -74155470 - L1MEd LINE L1 -3421 2708 2113 200 109 47 16 chr4 110133334 110133398 -74155264 + (TA)n Simple_repeat Simple_repeat 1 66 0 309 316 99 96 chr4 110133476 110134112 -74154550 - L1MEd LINE L1 -5240 879 242 292 286 116 18 chr4 110135011 110135123 -74153539 - L2 LINE L2 -4 3268 3146 328 414 59 0 chr4 110135249 110135418 -74153244 + L3 LINE CR1 1025 1203 -374 254 310 82 65 chr4 110137175 110137407 -74151255 + MLT1J LTR MaLR 85 320 -191 375 274 51 38 chr4 110137534 110137691 -74150971 + MLT1J LTR MaLR 350 508 -3 21 36 0 0 chr4 110137829 110137857 -74150805 + AT_rich Low_complexity Low_complexity 1 28 0 189 298 113 16 chr4 110138387 110138511 -74150151 - L3b LINE CR1 -150 1433 1298 2323 219 113 35 chr4 110138750 110139678 -74148984 - MER69 DNA AcHobo -7 2519 1519 1330 293 54 14 chr4 110139666 110140181 -74148481 - MER69 DNA AcHobo -1483 1043 508 * 456 192 0 0 chr4 110140181 110140280 -74148382 + CT-rich Low_complexity Low_complexity 2 100 0 450 103 35 11 chr4 110140421 110140508 -74148154 + CT-rich Low_complexity Low_complexity 4 92 0 1112 288 178 11 chr4 110140508 110140953 -74147709 - MER69 DNA AcHobo -2005 521 3 237 159 29 14 chr4 110142887 110142956 -74145706 + (TA)n Simple_repeat Simple_repeat 2 71 0 337 299 61 24 chr4 110144195 110144359 -74144303 + MIR SINE MIR 34 203 -59 220 216 0 0 chr4 110145207 110145258 -74143404 + A-rich Low_complexity Low_complexity 1 51 0 1559 147 118 42 chr4 110145962 110146275 -74142387 - MER1B DNA MER1_type 0 337 1 471 349 128 39 chr4 110146411 110146972 -74141690 + L2 LINE L2 2266 3211 -61 1935 115 97 26 chr4 110146972 110147312 -74141350 + THE1B LTR MaLR 1 364 0 471 349 128 39 chr4 110147312 110147380 -74141282 + L2 LINE L2 3211 3272 0 710 342 9 0 chr4 110147490 110147712 -74140950 + MIR SINE MIR 1 224 -38 981 258 149 20 chr4 110147989 110148284 -74140378 - LTR16B LTR ERVL -131 333 1 1005 239 146 6 chr4 110149379 110149709 -74138953 - HAL1b LINE L1 -752 596 221 885 225 0 0 chr4 110150281 110150441 -74138221 - MLT1A1 LTR MaLR -4 361 202 261 304 17 9 chr4 110150903 110151018 -74137644 + L1M4 LINE L1 4910 5025 -1121 26 50 0 0 chr4 110152517 110152557 -74136105 + AT_rich Low_complexity Low_complexity 1 40 0 315 262 143 74 chr4 110152809 110153163 -74135499 + MLT1J2 LTR MaLR 68 393 -16 263 246 62 0 chr4 110154116 110154181 -74134481 - HAL1 LINE L1 -1639 868 800 425 163 23 0 chr4 110154426 110154512 -74134150 + T-rich Low_complexity Low_complexity 2 89 0 252 167 0 0 chr4 110154624 110154672 -74133990 + T-rich Low_complexity Low_complexity 1 48 0 2130 101 9 28 chr4 110155104 110155421 -74133241 - AluSx SINE Alu -1 311 1 3985 128 18 2 chr4 110156698 110157323 -74131339 - MER41B LTR ERV1 0 635 1 835 267 79 24 chr4 110158035 110158376 -74130286 - L2 LINE L2 -18 3295 2936 1307 287 106 37 chr4 110158570 110159166 -74129496 - L2 LINE L2 -380 2934 2298 315 0 0 0 chr4 110159522 110159557 -74129105 + (CA)n Simple_repeat Simple_repeat 2 36 0 269 216 0 0 chr4 110162537 110162588 -74126074 + MER63 DNA MER1_type 2 52 -158 3851 125 29 94 chr4 110162834 110163674 -74124988 - LTR1 LTR ERV1 0 785 1 2283 69 0 3 chr4 110163749 110164040 -74124622 - AluY SINE Alu -17 294 5 874 146 48 0 chr4 110164126 110164291 -74124371 - L1MA6 LINE L1 0 6300 6128 1712 139 34 106 chr4 110164291 110164315 -74124347 - L1MA6 LINE L1 -1 6299 6275 2157 116 0 0 chr4 110164315 110164600 -74124062 - AluSx SINE Alu -27 285 1 1712 139 34 106 chr4 110164600 110164634 -74124028 - L1MA6 LINE L1 -25 6275 6240 2095 151 19 41 chr4 110164634 110165046 -74123616 - MER57A LTR ERV1 0 403 1 1712 139 34 106 chr4 110165046 110165209 -74123453 - L1MA6 LINE L1 -60 6240 5941 266 280 127 59 chr4 110165251 110165369 -74123293 - MIR3 SINE MIR -77 131 6 186 300 38 75 chr4 110165902 110165982 -74122680 + L2 LINE L2 3158 3234 -38 241 331 149 6 chr4 110165998 110166173 -74122489 - MIR SINE MIR -60 202 3 375 41 0 0 chr4 110167623 110167672 -74120990 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 1988 98 0 11 chr4 110167688 110167953 -74120709 - AluSq SINE Alu -51 262 1 214 295 171 0 chr4 110168022 110168127 -74120535 - MIR SINE MIR -69 193 71 23 0 0 0 chr4 110169505 110169528 -74119134 + AT_rich Low_complexity Low_complexity 1 23 0 353 278 124 10 chr4 110169546 110169643 -74119019 + L2 LINE L2 3191 3298 -15 24 32 0 0 chr4 110169646 110169677 -74118985 + AT_rich Low_complexity Low_complexity 1 31 0 2122 59 0 0 chr4 110170040 110170294 -74118368 + AluY SINE Alu 52 305 -6 21 36 0 0 chr4 110170337 110170365 -74118297 + AT_rich Low_complexity Low_complexity 1 28 0 700 341 9 13 chr4 110170650 110170879 -74117783 - MIR SINE MIR -4 258 31 419 250 160 27 chr4 110171415 110171603 -74117059 + MIR SINE MIR 21 233 -29 2222 111 0 13 chr4 110171654 110171969 -74116693 - AluSq SINE Alu -2 311 1 37 39 0 0 chr4 110172667 110172718 -74115944 + AT_rich Low_complexity Low_complexity 1 51 0 22 56 0 0 chr4 110173135 110173171 -74115491 + AT_rich Low_complexity Low_complexity 1 36 0 25 65 0 0 chr4 110173603 110173649 -74115013 + AT_rich Low_complexity Low_complexity 1 46 0 192 184 0 0 chr4 110174187 110174236 -74114426 + (TG)n Simple_repeat Simple_repeat 2 50 0 23 54 0 0 chr4 110174466 110174503 -74114159 + AT_rich Low_complexity Low_complexity 1 37 0 507 282 115 60 chr4 110175591 110176136 -74112526 - MLT1H1 LTR MaLR 0 555 11 207 114 0 0 chr4 110176189 110176224 -74112438 + (CAA)n Simple_repeat Simple_repeat 3 37 0 620 284 149 0 chr4 110176225 110176447 -74112215 - MIR SINE MIR -6 256 2 596 210 48 0 chr4 110177271 110177395 -74111267 + MER3 DNA MER1_type 1 130 -79 188 83 0 28 chr4 110177396 110177432 -74111230 + (TTTAA)n Simple_repeat Simple_repeat 1 35 0 232 305 42 42 chr4 110178291 110178386 -74110276 - MIR SINE MIR -129 133 39 259 316 36 36 chr4 110179269 110179408 -74109254 + MIR3 SINE MIR 34 172 -36 2188 106 3 0 chr4 110179871 110180163 -74108499 + AluSg SINE Alu 1 293 -17 23 97 0 0 chr4 110180169 110180241 -74108421 + AT_rich Low_complexity Low_complexity 1 72 0 250 200 17 17 chr4 110180949 110181009 -74107653 + MIR SINE MIR 181 240 -22 2608 154 7 2 chr4 110181149 110181597 -74107065 - L1MA6 LINE L1 -126 6174 5725 395 38 19 0 chr4 110181710 110181763 -74106899 + (CA)n Simple_repeat Simple_repeat 1 54 0 1699 224 50 64 chr4 110182988 110183550 -74105112 - MLT2B3 LTR ERVL 0 554 1 201 74 0 0 chr4 110183550 110183577 -74105085 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 250 307 59 30 chr4 110184559 110184660 -74104002 - MIR SINE MIR -34 228 125 1908 153 64 0 chr4 110185208 110185535 -74103127 + MER7A DNA MER2_type 1 346 0 369 0 0 0 chr4 110187681 110187722 -74100940 + (CA)n Simple_repeat Simple_repeat 2 42 0 2378 51 7 0 chr4 110187770 110188065 -74100597 + AluY SINE Alu 1 297 -14 946 209 181 53 chr4 110188608 110188928 -74099734 + MLT1A1 LTR MaLR 4 364 -1 312 357 36 22 chr4 110189358 110189582 -74099080 - HAL1 LINE L1 -1798 709 483 436 335 158 11 chr4 110189986 110190353 -74098309 - MLT1J2 LTR MaLR -27 423 3 2221 105 3 0 chr4 110192221 110192516 -74096146 + AluSq SINE Alu 1 296 -17 451 152 0 13 chr4 110192662 110192741 -74095921 + MER116 DNA Mariner 1 78 -2 1662 162 50 77 chr4 110193172 110193573 -74095089 + MLT1B LTR MaLR 1 390 0 293 221 106 29 chr4 110193686 110193790 -74094872 - MER103 DNA DNA -54 112 1 441 0 0 0 chr4 110194437 110194486 -74094176 + (CA)n Simple_repeat Simple_repeat 2 50 0 586 248 25 6 chr4 110194488 110194649 -74094013 - MER103 DNA DNA -1 165 2 34 0 0 0 chr4 110195385 110195419 -74093243 + AT_rich Low_complexity Low_complexity 1 34 0 1643 115 19 22 chr4 110195422 110195692 -74092970 - L1MA2 LINE L1 -1 6303 6035 1900 115 3 35 chr4 110195878 110196235 -74092427 + MER4A LTR ERV1 261 664 0 217 212 30 30 chr4 110197435 110197501 -74091161 + CT-rich Low_complexity Low_complexity 3 68 0 487 253 143 7 chr4 110198425 110198579 -74090083 + MER5B DNA MER1_type 3 177 -1 30 45 0 0 chr4 110200935 110200979 -74087683 + AT_rich Low_complexity Low_complexity 1 44 0 217 221 44 15 chr4 110201042 110201110 -74087552 + CT-rich Low_complexity Low_complexity 3 72 0 321 50 33 83 chr4 110201114 110201174 -74087488 - Alu SINE Alu 0 302 246 940 110 0 0 chr4 110201178 110201305 -74087357 - AluSg SINE Alu -183 127 1 266 296 0 127 chr4 110202441 110202583 -74086079 - MIR SINE MIR -133 129 6 181 268 197 0 chr4 110203289 110203360 -74085302 - L2 LINE L2 0 3313 3229 227 293 43 35 chr4 110203483 110203599 -74085063 - L2 LINE L2 -301 3012 2896 194 367 102 10 chr4 110205747 110205845 -74082817 - MIR SINE MIR -130 132 26 593 91 0 0 chr4 110205932 110206009 -74082653 + AluSq/x SINE Alu 56 132 -181 2457 86 0 3 chr4 110206012 110206326 -74082336 + AluSq SINE Alu 1 313 0 2270 77 0 3 chr4 110207414 110207711 -74080951 + AluY SINE Alu 1 296 -15 1608 188 53 9 chr4 110207857 110208198 -74080464 - MLT1A1 LTR MaLR 0 365 10 199 299 122 73 chr4 110208604 110208702 -74079960 - L2 LINE L2 -212 3060 2968 1916 143 3 0 chr4 110208702 110208988 -74079674 + AluSq SINE Alu 4 290 -23 199 299 122 73 chr4 110208988 110209531 -74079131 - L2 LINE L2 -304 2968 2382 213 275 0 43 chr4 110209601 110209670 -74078992 - L2 LINE L2 -1 3312 3247 205 277 0 21 chr4 110209826 110209873 -74078789 + MIR3 SINE MIR 110 155 -53 * 497 277 155 0 chr4 110209872 110210027 -74078635 + MER5A DNA MER1_type 11 189 0 29 0 0 0 chr4 110210229 110210258 -74078404 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 110210850 110210878 -74077784 + AT_rich Low_complexity Low_complexity 1 28 0 1925 139 3 14 chr4 110211298 110211593 -74077069 - AluSx SINE Alu -19 293 2 66 0 0 0 chr4 110212498 110212564 -74076098 + AT_rich Low_complexity Low_complexity 1 66 0 211 234 21 0 chr4 110214377 110214424 -74074238 + (CATA)n Simple_repeat Simple_repeat 2 49 0 24 67 0 0 chr4 110215594 110215639 -74073023 + AT_rich Low_complexity Low_complexity 1 45 0 192 77 0 0 chr4 110216494 110216520 -74072142 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 215 255 0 0 chr4 110217877 110217924 -74070738 + L2 LINE L2 3265 3311 -2 324 0 0 0 chr4 110222708 110222744 -74065918 + (T)n Simple_repeat Simple_repeat 1 36 0 229 214 18 18 chr4 110223394 110223450 -74065212 - LTR68 LTR ERV1 -461 279 224 1273 125 14 5 chr4 110226523 110226731 -74061931 + L1MA9 LINE L1 6103 6312 0 32 0 0 0 chr4 110226974 110227006 -74061656 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr4 110227079 110227107 -74061555 + AT_rich Low_complexity Low_complexity 1 28 0 12562 116 8 38 chr4 110227295 110230401 -74058261 + L1PA7 LINE L1 1 3074 -3387 16050 88 6 0 chr4 110230403 110233481 -74055181 + L1PA7 LINE L1 3356 6467 -2 25 51 0 0 chr4 110233512 110233551 -74055111 + AT_rich Low_complexity Low_complexity 1 39 0 2293 98 0 3 chr4 110233707 110234012 -74054650 - AluSg1 SINE Alu -5 304 1 1570 169 44 73 chr4 110234210 110234594 -74054068 + THE1C LTR MaLR 1 373 -2 578 255 90 71 chr4 110236285 110236552 -74052110 - L2 LINE L2 0 3313 3042 242 276 0 82 chr4 110236631 110236729 -74051933 - L2 LINE L2 -183 3089 3000 455 268 46 52 chr4 110238038 110238232 -74050430 + MIR SINE MIR 70 262 0 199 287 111 83 chr4 110238278 110238386 -74050276 - L2 LINE L2 -8 3264 3154 305 327 47 20 chr4 110238758 110238908 -74049754 + L2 LINE L2 3139 3292 -21 21 71 0 0 chr4 110239343 110239385 -74049277 + AT_rich Low_complexity Low_complexity 1 42 0 474 313 40 54 chr4 110239480 110239908 -74048754 + LTR16A1 LTR ERVL 34 455 -2 2650 296 64 65 chr4 110239912 110241467 -74047195 + HERV16 LTR ERVL 2 1554 -3442 1258 188 0 21 chr4 110242140 110242374 -74046288 - MER46A DNA MER2_type -7 229 1 1460 92 5 0 chr4 110242484 110242690 -74045972 - L1PA6 LINE L1 0 6154 5948 747 85 0 0 chr4 110242690 110242796 -74045866 + L1PA6 LINE L1 5854 5959 -195 180 253 108 36 chr4 110243265 110243348 -74045314 - L3 LINE CR1 -699 878 790 334 227 108 85 chr4 110243475 110243651 -74045011 - L2 LINE L2 0 3313 3134 1236 138 38 0 chr4 110243732 110243942 -74044720 + L1MC1 LINE L1 6116 6333 0 217 286 87 63 chr4 110244353 110244479 -74044183 - MIR SINE MIR -27 235 107 21 0 0 0 chr4 110244668 110244689 -74043973 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 110244931 110244955 -74043707 + AT_rich Low_complexity Low_complexity 1 24 0 398 264 223 7 chr4 110245778 110245926 -74042736 + MER5A DNA MER1_type 4 183 -6 304 231 163 34 chr4 110246680 110246827 -74041835 - MIR SINE MIR -44 218 53 389 299 104 42 chr4 110247160 110247562 -74041100 - HAL1 LINE L1 -418 2089 1663 198 209 0 0 chr4 110297900 110297943 -73990719 + CT-rich Low_complexity Low_complexity 3 45 0 588 325 15 5 chr4 110298340 110298540 -73990122 + MIR SINE MIR 2 203 -59 1022 136 47 51 chr4 110298676 110298890 -73989772 - THE1C LTR MaLR 0 375 163 5756 128 41 4 chr4 110298990 110300049 -73988613 + L1PBa LINE L1 1506 2603 -4260 1503 86 18 5 chr4 110300149 110300371 -73988291 + L1MA3 LINE L1 6081 6305 0 261 274 15 132 chr4 110301401 110301598 -73987064 - L2 LINE L2 -226 3046 2873 330 226 107 0 chr4 110301616 110301700 -73986962 + AluSg SINE Alu 1 93 -207 669 82 0 0 chr4 110301700 110301798 -73986864 + L1MA3 LINE L1 5893 5990 -315 1620 155 0 0 chr4 110301798 110302037 -73986625 + AluSx SINE Alu 55 293 -19 790 217 48 5 chr4 110302170 110302359 -73986303 + MER3 DNA MER1_type 12 208 -1 247 328 102 32 chr4 110302495 110302681 -73985981 - L2 LINE L2 -778 2536 2338 1752 123 4 38 chr4 110302681 110302942 -73985720 - AluSx SINE Alu -19 293 42 351 294 38 31 chr4 110303098 110303258 -73985404 - L1ME3 LINE L1 -270 5892 5732 2066 115 11 0 chr4 110303537 110303823 -73984839 - AluSx SINE Alu -23 289 1 2699 222 89 45 chr4 110304143 110305265 -73983397 - L1PBa LINE L1 -5459 1404 81 263 270 0 0 chr4 110305639 110305713 -73982949 + (TG)n Simple_repeat Simple_repeat 2 75 0 199 250 0 0 chr4 110305765 110305809 -73982853 + L2 LINE L2 3268 3311 -2 646 240 29 11 chr4 110308133 110308308 -73980354 - MER5B DNA MER1_type 0 178 1 547 276 114 31 chr4 110308415 110308643 -73980019 - MIR SINE MIR -4 258 12 734 205 13 19 chr4 110308646 110308802 -73979860 + MER106B DNA MER1_type 1 155 -904 23 0 0 0 chr4 110308804 110308827 -73979835 + AT_rich Low_complexity Low_complexity 1 23 0 223 279 0 0 chr4 110310481 110310524 -73978138 - L2 LINE L2 -16 3256 3214 369 285 94 79 chr4 110310751 110311264 -73977398 - MLT1K LTR MaLR -23 565 2 341 211 240 0 chr4 110311276 110311380 -73977282 - MER5A DNA MER1_type -19 170 42 341 294 39 0 chr4 110313564 110313666 -73974996 - L2 LINE L2 -25 3247 3142 3614 128 74 22 chr4 110314479 110315442 -73973220 + MER11A LTR ERVK 1 1266 0 23 0 0 0 chr4 110315691 110315714 -73972948 + AT_rich Low_complexity Low_complexity 1 23 0 437 316 78 44 chr4 110315884 110316317 -73972345 + L2 LINE L2 2667 3313 0 2063 120 7 10 chr4 110317287 110317578 -73971084 + AluSx SINE Alu 1 290 -22 26 0 0 0 chr4 110317578 110317604 -73971058 + AT_rich Low_complexity Low_complexity 1 26 0 2443 225 61 86 chr4 110318018 110318868 -73969794 - MER45C DNA AcHobo 0 953 125 553 224 16 0 chr4 110318973 110319098 -73969564 - MER45C DNA AcHobo -826 127 1 279 377 14 7 chr4 110322776 110322922 -73965740 + L2 LINE L2 3167 3313 0 1668 199 8 45 chr4 110322980 110323357 -73965305 + MLT1A1 LTR MaLR 1 363 -2 1652 129 0 0 chr4 110324838 110325070 -73963592 - AluJb SINE Alu -80 232 1 232 186 0 0 chr4 110325101 110325144 -73963518 + L1M3 LINE L1 5577 5619 -561 226 350 68 8 chr4 110325982 110326099 -73962563 + L2 LINE L2 3142 3265 -7 220 232 43 43 chr4 110326215 110326284 -73962378 + MIR SINE MIR 194 262 0 199 339 42 34 chr4 110326371 110326489 -73962173 - L2 LINE L2 -480 2834 2716 3015 109 9 2 chr4 110326566 110327008 -73961654 + L1PA14 LINE L1 5704 6148 -13 329 278 62 45 chr4 110327064 110327240 -73961422 - MIR SINE MIR 0 262 84 1467 228 45 11 chr4 110328455 110328833 -73959829 + LTR52 LTR ERVL 12 402 -19 213 39 0 0 chr4 110328962 110328988 -73959674 + (CA)n Simple_repeat Simple_repeat 1 26 0 847 182 0 0 chr4 110329178 110329310 -73959352 + FLAM_C SINE Alu 2 133 0 947 223 15 15 chr4 110329334 110329540 -73959122 - MIR SINE MIR -10 252 47 25 0 0 0 chr4 110329622 110329647 -73959015 + AT_rich Low_complexity Low_complexity 1 25 0 438 308 107 36 chr4 110329920 110330333 -73958329 + MLT1L LTR MaLR 151 592 -23 707 272 101 26 chr4 110332302 110332530 -73956132 + MIR SINE MIR 8 252 -10 227 262 89 83 chr4 110332645 110332813 -73955849 + L2 LINE L2 2891 3059 -213 194 149 43 64 chr4 110333017 110333064 -73955598 + L2 LINE L2 3267 3312 -1 521 278 42 25 chr4 110334759 110335117 -73953545 - LTR33 LTR ERVL -8 513 119 509 283 92 40 chr4 110336126 110336472 -73952190 + HAL1 LINE L1 258 621 -1886 1725 172 25 3 chr4 110336530 110336815 -73951847 + AluJb SINE Alu 11 301 -11 2210 118 0 0 chr4 110337020 110337317 -73951345 + AluSg SINE Alu 1 297 -13 323 242 16 81 chr4 110337325 110337449 -73951213 + HAL1 LINE L1 993 1108 -1399 547 216 91 11 chr4 110337451 110337627 -73951035 + HAL1 LINE L1 1442 1631 -876 722 291 47 23 chr4 110337916 110338289 -73950373 + MLT1J2 LTR MaLR 21 447 -3 272 149 175 26 chr4 110338318 110338432 -73950230 - L1ME4a LINE L1 -3 6118 5988 238 341 15 0 chr4 110339069 110339204 -73949458 - L1ME4a LINE L1 -303 5818 5682 24 32 0 0 chr4 110339486 110339517 -73949145 + AT_rich Low_complexity Low_complexity 1 31 0 411 195 23 0 chr4 110340249 110340336 -73948326 - L1ME4a LINE L1 -465 5656 5568 34837 40 29 3 chr4 110340338 110344892 -73943770 + L1P LINE L1 1 4672 -1474 1101 155 17 6 chr4 110345050 110345264 -73943398 + FRAM SINE Alu 1 216 0 525 291 94 21 chr4 110345289 110345619 -73943043 + HAL1 LINE L1 2083 2436 -71 24 0 0 0 chr4 110345722 110345746 -73942916 + AT_rich Low_complexity Low_complexity 1 24 0 1908 121 62 0 chr4 110345824 110346113 -73942549 + AluSx SINE Alu 1 307 -5 203 271 167 0 chr4 110346234 110346330 -73942332 + MIR SINE MIR 150 261 -1 561 284 142 26 chr4 110346500 110346852 -73941810 + MLT1I LTR MaLR 1 393 -16 315 0 0 0 chr4 110346902 110346937 -73941725 + (TC)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr4 110346976 110346997 -73941665 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr4 110348384 110348411 -73940251 + AT_rich Low_complexity Low_complexity 1 27 0 2285 88 3 0 chr4 110349589 110349883 -73938779 + AluY SINE Alu 1 295 -16 286 212 0 71 chr4 110350355 110350440 -73938222 - MIR SINE MIR -83 179 101 511 216 48 174 chr4 110351067 110351358 -73937304 + MIR SINE MIR 7 260 -2 2078 91 0 14 chr4 110351853 110352162 -73936500 + AluSc SINE Alu 1 305 0 285 140 0 0 chr4 110353727 110353777 -73934885 - Tigger4(Zombi) DNA MER2_type -441 2290 2241 1026 202 87 10 chr4 110354190 110354398 -73934264 + MER58A DNA MER1_type 1 224 0 15809 114 40 26 chr4 110354981 110355137 -73933525 - Tigger4(Zombi) DNA MER2_type -4 2727 2575 243 0 0 0 chr4 110355137 110355164 -73933498 + (TA)n Simple_repeat Simple_repeat 2 28 0 15809 114 40 26 chr4 110355164 110356549 -73932113 - Tigger4(Zombi) DNA MER2_type -156 2575 1211 1682 105 8 4 chr4 110356549 110356816 -73931846 + L1MA2 LINE L1 6037 6304 0 15809 114 40 26 chr4 110356816 110357511 -73931151 - Tigger4(Zombi) DNA MER2_type -1520 1211 443 2172 113 0 7 chr4 110357511 110357820 -73930842 - AluSc SINE Alu -2 307 1 15809 114 40 26 chr4 110357820 110358270 -73930392 - Tigger4(Zombi) DNA MER2_type -2288 443 1 277 253 120 33 chr4 110358674 110358824 -73929838 + ERVL LTR ERVL 4618 4780 -984 2154 129 0 28 chr4 110358824 110359142 -73929520 + AluSx SINE Alu 1 309 -3 4757 202 69 26 chr4 110359240 110359610 -73929052 + Charlie1a DNA MER1_type 32 385 -2376 2497 54 0 22 chr4 110359610 110359924 -73928738 + AluY SINE Alu 1 307 -4 4757 202 69 26 chr4 110359924 110360700 -73927962 + Charlie1a DNA MER1_type 385 1248 -1513 1069 150 12 0 chr4 110360700 110360873 -73927789 + L1PA8A LINE L1 5939 6113 -18 4757 202 69 26 chr4 110360873 110361086 -73927576 + Charlie1a DNA MER1_type 1248 1450 -5 27 29 0 0 chr4 110361188 110361222 -73927440 + AT_rich Low_complexity Low_complexity 1 34 0 220 278 0 0 chr4 110363378 110363432 -73925230 - L2 LINE L2 -8 3264 3211 217 344 78 7 chr4 110363498 110363652 -73925010 + L2 LINE L2 2608 2772 -542 2301 105 3 10 chr4 110363826 110364131 -73924531 + AluSc SINE Alu 1 303 -6 2161 105 0 10 chr4 110364146 110364441 -73924221 + AluSx SINE Alu 21 312 0 2010 208 58 64 chr4 110364961 110365552 -73923110 - MLT1E LTR MaLR -4 589 3 322 267 33 0 chr4 110366651 110366741 -73921921 + L2 LINE L2 3220 3312 -1 334 329 27 20 chr4 110366872 110367018 -73921644 - MIR SINE MIR -56 206 60 905 245 124 43 chr4 110368466 110368838 -73919824 - MLT1J2 LTR MaLR -27 423 22 225 324 0 14 chr4 110370225 110370296 -73918366 - L2 LINE L2 -15 3257 3188 6008 60 9 1 chr4 110370404 110371167 -73917495 + L1PA8 LINE L1 5395 6163 -9 818 247 69 103 chr4 110371177 110371353 -73917309 - MLT1J LTR MaLR -46 465 285 1161 85 0 0 chr4 110371353 110371506 -73917156 + L1PA11 LINE L1 6021 6173 -1 818 247 69 103 chr4 110371506 110371806 -73916856 - MLT1J LTR MaLR -226 285 5 311 348 0 43 chr4 110371922 110372063 -73916599 - L2 LINE L2 -219 3053 2919 395 329 71 14 chr4 110372108 110372318 -73916344 - L2 LINE L2 -470 2844 2623 281 297 47 68 chr4 110372488 110372636 -73916026 - L2 LINE L2 -946 2368 2224 2244 81 7 7 chr4 110373070 110373366 -73915296 - AluSg SINE Alu -14 296 1 372 224 35 0 chr4 110373618 110373703 -73914959 - MIR SINE MIR 0 262 175 23 0 0 0 chr4 110374109 110374132 -73914530 + AT_rich Low_complexity Low_complexity 1 23 0 31 58 0 0 chr4 110374741 110374793 -73913869 + AT_rich Low_complexity Low_complexity 1 52 0 4073 137 29 40 chr4 110375131 110375197 -73913465 - L1MD1 LINE L1 -1 6241 6176 2110 127 0 7 chr4 110375197 110375489 -73913173 + AluSx SINE Alu 1 290 -22 4073 137 29 40 chr4 110375489 110376182 -73912480 - L1MD1 LINE L1 -66 6176 5490 231 152 0 0 chr4 110376572 110376618 -73912044 + T-rich Low_complexity Low_complexity 4 49 0 195 69 0 0 chr4 110378184 110378213 -73910449 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2166 136 0 0 chr4 110378715 110379024 -73909638 - AluSx SINE Alu -3 309 1 1926 147 0 10 chr4 110379434 110379726 -73908936 + AluJo SINE Alu 1 289 -23 996 273 139 28 chr4 110380363 110380832 -73907830 - LTR33 LTR ERVL 0 521 1 194 263 224 39 chr4 110380978 110381134 -73907528 + L2 LINE L2 3038 3222 -91 180 163 0 0 chr4 110381174 110381217 -73907445 + (TGAA)n Simple_repeat Simple_repeat 4 46 0 342 286 79 0 chr4 110383609 110383735 -73904927 + L2 LINE L2 3177 3312 -1 4687 148 45 14 chr4 110383839 110384644 -73904018 + L1MB7 LINE L1 15 844 -6721 4238 102 23 5 chr4 110384638 110385298 -73903364 + L1MB7 LINE L1 2828 3499 -4066 * 516 84 0 0 chr4 110385316 110385399 -73903263 + (CAGG)n Simple_repeat Simple_repeat 2 84 0 3420 164 25 37 chr4 110385403 110386155 -73902507 + L1MB7 LINE L1 4521 5263 -2302 2341 92 9 3 chr4 110386158 110386496 -73902166 + L1MA3 LINE L1 5717 6056 -249 1190 105 0 58 chr4 110386719 110386891 -73901771 + AluSx SINE Alu 1 162 -150 22 35 0 0 chr4 110387578 110387607 -73901055 + AT_rich Low_complexity Low_complexity 1 29 0 4010 159 55 34 chr4 110387732 110388484 -73900178 + L1MB7 LINE L1 6527 7304 -299 7367 43 1 2 chr4 110388484 110389594 -73899068 + L1PA5 LINE L1 5046 6154 0 4010 159 55 34 chr4 110389594 110389881 -73898781 + L1MB7 LINE L1 7304 7584 -19 23 0 0 0 chr4 110390080 110390103 -73898559 + AT_rich Low_complexity Low_complexity 1 23 0 7767 17 0 1 chr4 110390356 110391618 -73897044 + L1PA2 LINE L1 4895 6155 0 228 0 93 23 chr4 110391621 110391664 -73896998 + A-rich Low_complexity Low_complexity 1 46 0 2482 156 29 7 chr4 110392072 110392489 -73896173 - MSTB LTR MaLR 0 426 1 25 0 0 0 chr4 110392496 110392521 -73896141 + AT_rich Low_complexity Low_complexity 1 25 0 294 262 60 0 chr4 110392924 110393008 -73895654 - MIR SINE MIR -56 206 118 228 320 113 0 chr4 110393146 110393243 -73895419 + MLT1K LTR MaLR 113 220 -368 647 229 47 31 chr4 110393824 110394016 -73894646 + MLT1K LTR MaLR 394 588 0 716 163 31 0 chr4 110394149 110394278 -73894384 + L1PB4 LINE L1 6022 6154 -2 242 383 25 15 chr4 110394442 110394643 -73894019 - L2 LINE L2 -181 3091 2889 5768 118 6 7 chr4 110395519 110396782 -73891880 + L1PA16 LINE L1 4913 6157 -9 399 328 88 6 chr4 110397272 110397443 -73891219 - MER5A DNA MER1_type -3 186 2 2157 112 3 19 chr4 110397643 110397955 -73890707 + AluSq SINE Alu 1 307 -6 249 310 62 48 chr4 110398130 110398275 -73890387 + MER5A DNA MER1_type 18 164 -25 * 260 318 95 14 chr4 110398148 110398296 -73890366 - MER5B DNA MER1_type -18 160 1 4974 122 56 55 chr4 110399053 110399975 -73888687 - MER49 LTR ERV1 0 923 1 24 0 0 0 chr4 110399975 110399999 -73888663 + AT_rich Low_complexity Low_complexity 1 24 0 603 217 145 14 chr4 110400257 110400320 -73888342 + ORSL DNA AcHobo 11 64 -211 198 103 0 0 chr4 110400320 110400349 -73888313 + (CA)n Simple_repeat Simple_repeat 2 30 0 603 217 145 14 chr4 110400349 110400492 -73888170 + ORSL DNA AcHobo 64 244 -31 204 250 16 0 chr4 110400530 110400594 -73888068 + A-rich Low_complexity Low_complexity 6 70 0 846 279 25 25 chr4 110401870 110402110 -73886552 + MIR SINE MIR 23 262 0 1982 44 4 67 chr4 110402689 110402959 -73885703 - AluY SINE Alu -58 253 1 856 331 30 82 chr4 110403454 110403919 -73884743 - L2 LINE L2 0 3272 2832 266 204 35 106 chr4 110404358 110404471 -73884191 - L1PA15-16 LINE L1 -6504 345 241 1743 169 3 40 chr4 110405387 110405689 -73882973 - AluJb SINE Alu -21 291 1 1696 262 61 26 chr4 110405750 110406217 -73882445 + MLT1G LTR MaLR 51 613 -41 1434 161 209 43 chr4 110406327 110406417 -73882245 + MLT1C LTR MaLR 1 75 -392 2000 132 3 10 chr4 110406417 110406720 -73881942 - AluSq SINE Alu -12 301 1 1434 161 209 43 chr4 110406720 110407027 -73881635 + MLT1C LTR MaLR 75 464 -3 204 327 115 18 chr4 110407140 110407253 -73881409 - L3 LINE CR1 -63 1514 1391 257 348 54 22 chr4 110407286 110407470 -73881192 - L3 LINE CR1 -267 1310 1121 1818 117 0 0 chr4 110407578 110407825 -73880837 + AluSx SINE Alu 58 304 -8 287 347 104 14 chr4 110407825 110407969 -73880693 + L3 LINE CR1 1396 1552 -25 239 211 0 28 chr4 110408586 110408657 -73880005 + L1ME3A LINE L1 5261 5329 -2479 1060 161 39 0 chr4 110408660 110408840 -73879822 + MLT1A1 LTR MaLR 179 365 0 1084 238 135 44 chr4 110408870 110409478 -73879184 + LTR50 LTR ERVL 1 761 -34 1195 234 49 39 chr4 110409481 110409869 -73878793 + L1ME3A LINE L1 5747 6138 -32 21 0 0 0 chr4 110409882 110409903 -73878759 + AT_rich Low_complexity Low_complexity 1 21 0 43 35 0 0 chr4 110410012 110410069 -73878593 + AT_rich Low_complexity Low_complexity 1 57 0 336 185 0 0 chr4 110410807 110410872 -73877790 - L1ME3A LINE L1 -69 6101 6037 240 290 29 0 chr4 110410924 110410993 -73877669 - L2 LINE L2 0 3313 3243 358 296 0 0 chr4 110411016 110411104 -73877558 + MIR SINE MIR 53 140 -122 2169 94 74 11 chr4 110411228 110411580 -73877082 - THE1C LTR MaLR 0 375 2 428 283 163 72 chr4 110411580 110412129 -73876533 + HAL1 LINE L1 30 632 -1875 675 231 47 5 chr4 110412229 110412441 -73876221 + HAL1 LINE L1 1994 2214 -293 243 268 46 32 chr4 110412531 110412661 -73876001 + MLT2E LTR ERVL 41 215 -342 1707 146 87 10 chr4 110412710 110412998 -73875664 + AluSx SINE Alu 1 310 -2 231 294 78 0 chr4 110413297 110413399 -73875263 + HAL1 LINE L1 2289 2398 -109 1804 172 3 3 chr4 110413583 110413880 -73874782 + AluJo SINE Alu 1 297 -15 2220 130 3 0 chr4 110414457 110414765 -73873897 - AluSx SINE Alu -1 311 3 3137 206 53 15 chr4 110416112 110416905 -73871757 - L1MB8 LINE L1 -23 6155 5333 2114 125 0 3 chr4 110416906 110417194 -73871468 + AluSx SINE Alu 5 291 -21 357 208 0 0 chr4 110417222 110417299 -73871363 + (CATATA)n Simple_repeat Simple_repeat 5 81 0 844 149 0 15 chr4 110417320 110417454 -73871208 - FLAM_C SINE Alu 0 133 2 628 233 6 17 chr4 110417454 110417626 -73871036 - L1MB8 LINE L1 -813 5333 5164 458 257 71 33 chr4 110417812 110417995 -73870667 + MER63A DNA MER1_type 20 209 -1 746 253 64 122 chr4 110418499 110418520 -73870142 + MLT1J LTR MaLR 2 23 -488 1915 120 78 59 chr4 110418520 110418877 -73869785 - THE1B LTR MaLR 0 364 1 746 253 64 122 chr4 110418877 110419372 -73869290 + MLT1J LTR MaLR 23 488 -23 297 373 113 11 chr4 110419529 110419714 -73868948 + MIR3 SINE MIR 5 208 0 679 237 111 0 chr4 110419773 110419963 -73868699 - MIR SINE MIR -40 222 12 480 276 162 29 chr4 110421705 110421915 -73866747 - MIR SINE MIR -13 249 12 2122 126 0 0 chr4 110423621 110423922 -73864740 + AluSx SINE Alu 1 301 -11 294 189 0 14 chr4 110424632 110424706 -73863956 + L1P LINE L1 4982 5054 -1092 950 270 32 0 chr4 110425004 110425252 -73863410 - MIR SINE MIR -3 259 4 526 251 126 58 chr4 110425254 110425652 -73863010 + L1ME LINE L1 5398 5822 -299 * 4406 174 42 16 chr4 110425640 110426534 -73862128 + L1MB1 LINE L1 5205 6123 -45 2155 126 0 0 chr4 110426534 110426828 -73861834 + AluSg SINE Alu 1 294 -16 4406 174 42 16 chr4 110426828 110426863 -73861799 + L1MB1 LINE L1 6123 6156 -12 219 36 0 0 chr4 110428154 110428182 -73860480 + (CA)n Simple_repeat Simple_repeat 1 28 0 423 322 18 12 chr4 110428490 110428652 -73860010 - MIR SINE MIR -66 142 16 2090 117 0 7 chr4 110428857 110429148 -73859514 + AluSq SINE Alu 1 289 -24 22 0 0 0 chr4 110429155 110429177 -73859485 + AT_rich Low_complexity Low_complexity 1 22 0 2056 122 0 3 chr4 110429979 110430267 -73858395 + AluSx SINE Alu 5 291 -21 482 241 171 12 chr4 110430282 110430452 -73858210 - MLT1J LTR MaLR -312 199 3 357 24 0 0 chr4 110433182 110433224 -73855438 + (TA)n Simple_repeat Simple_repeat 1 42 0 279 0 0 0 chr4 110433223 110433254 -73855408 + (CA)n Simple_repeat Simple_repeat 2 32 0 * 433 310 58 11 chr4 110434150 110434324 -73854338 - MIR SINE MIR -80 182 1 833 245 15 68 chr4 110434850 110435067 -73853595 + MIR SINE MIR 2 204 -58 183 42 0 0 chr4 110435067 110435091 -73853571 + (GA)n Simple_repeat Simple_repeat 2 25 0 833 245 15 68 chr4 110435091 110435138 -73853524 + MIR SINE MIR 204 252 -10 973 226 33 0 chr4 110435989 110436201 -73852461 - MER58A DNA MER1_type 0 224 6 21 57 0 0 chr4 110436267 110436302 -73852360 + AT_rich Low_complexity Low_complexity 1 35 0 338 291 77 17 chr4 110436523 110436640 -73852022 - MIR SINE MIR -116 146 23 21 36 0 0 chr4 110436882 110436910 -73851752 + AT_rich Low_complexity Low_complexity 1 28 0 561 113 31 0 chr4 110437157 110437254 -73851408 - L1PA15 LINE L1 0 6165 6066 21 0 0 0 chr4 110438060 110438081 -73850581 + AT_rich Low_complexity Low_complexity 1 21 0 770 278 68 16 chr4 110438085 110438581 -73850081 + L1ME LINE L1 2141 2662 -3484 285 206 48 0 chr4 110438727 110438790 -73849872 + L1ME LINE L1 2733 2798 -3348 1036 232 178 36 chr4 110438852 110439374 -73849288 + L1ME LINE L1 4563 5158 -988 2178 108 3 0 chr4 110439574 110439869 -73848793 + AluSp SINE Alu 1 296 -17 328 286 38 0 chr4 110439871 110440020 -73848642 + L1ME LINE L1 5343 5497 -669 447 106 0 0 chr4 110440300 110440366 -73848296 + (TC)n Simple_repeat Simple_repeat 1 66 0 1065 166 64 0 chr4 110440366 110440601 -73848061 - AluJb SINE Alu -29 283 34 395 294 103 94 chr4 110440906 110441525 -73847137 - L1M2 LINE L1 -5657 1192 568 315 292 90 67 chr4 110444521 110444709 -73843953 - L1ME4a LINE L1 -3 6118 5919 786 176 0 0 chr4 110444709 110444834 -73843828 - FLAM_C SINE Alu -8 125 1 315 292 90 67 chr4 110444834 110444957 -73843705 - L1ME4a LINE L1 -202 5919 5800 593 329 62 6 chr4 110444960 110445339 -73843323 - L1ME4a LINE L1 -356 5765 5351 24 32 0 0 chr4 110445425 110445456 -73843206 + AT_rich Low_complexity Low_complexity 1 31 0 339 275 54 36 chr4 110445538 110445705 -73842957 - L1ME4a LINE L1 -1036 5110 4941 311 268 93 48 chr4 110445783 110446074 -73842588 - L1ME4a LINE L1 -1730 4416 4113 808 229 98 14 chr4 110446211 110446425 -73842237 + MIR SINE MIR 2 233 -29 2400 150 25 44 chr4 110446564 110446998 -73841664 + MSTB LTR MaLR 1 426 0 561 194 236 0 chr4 110446998 110447142 -73841520 - MER5A DNA MER1_type -1 188 11 273 322 22 11 chr4 110447301 110447391 -73841271 - MIR SINE MIR -97 111 21 985 192 59 0 chr4 110447707 110447910 -73840752 + MER20 DNA MER1_type 1 215 -4 516 282 118 29 chr4 110448250 110448485 -73840177 + MIR SINE MIR 4 252 -10 230 158 26 0 chr4 110448451 110448489 -73840173 + L2 LINE L2 3263 3301 -12 * 1797 185 10 0 chr4 110449793 110450096 -73838566 - AluSx SINE Alu -6 306 1 2012 110 4 4 chr4 110450279 110450560 -73838102 + AluSx SINE Alu 1 281 -31 26 0 0 0 chr4 110451050 110451076 -73837586 + AT_rich Low_complexity Low_complexity 1 26 0 329 204 41 10 chr4 110451187 110451285 -73837377 + L1MC/D LINE L1 5378 5478 -2330 528 246 24 8 chr4 110451416 110451542 -73837120 - MIR SINE MIR -89 173 46 394 259 89 96 chr4 110451773 110452043 -73836619 + L2 LINE L2 2954 3221 -92 1402 157 80 15 chr4 110452578 110452903 -73835759 - LTR37A LTR ERV1 0 426 81 30 0 0 0 chr4 110453624 110453654 -73835008 + AT_rich Low_complexity Low_complexity 1 30 0 556 308 32 78 chr4 110453963 110454226 -73834436 - L2 LINE L2 -3 3310 3065 2020 144 72 5 chr4 110454226 110454629 -73834033 - L1MA4A LINE L1 0 6303 5874 556 308 32 78 chr4 110454629 110454709 -73833953 - L2 LINE L2 -248 3065 2983 7593 119 70 26 chr4 110454977 110455657 -73833005 + L1MA2 LINE L1 3658 4307 -1997 2103 117 10 3 chr4 110455657 110455947 -73832715 + AluSx SINE Alu 5 296 -16 7593 119 70 26 chr4 110455947 110456611 -73832051 + L1MA2 LINE L1 4307 4940 -1364 19296 52 56 1 chr4 110456611 110459787 -73828875 + L1PA5 LINE L1 2912 6139 -15 2610 64 3 9 chr4 110459795 110460138 -73828524 + L1PA5 LINE L1 5814 6154 0 7593 119 70 26 chr4 110460138 110460353 -73828309 + L1MA2 LINE L1 4946 5150 -1154 1702 149 56 21 chr4 110460353 110460641 -73828021 + AluJb SINE Alu 1 298 -14 7593 119 70 26 chr4 110460641 110461571 -73827091 + L1MA2 LINE L1 5145 6295 -4 2050 51 0 81 chr4 110461571 110461866 -73826796 - AluY SINE Alu -12 299 29 2805 13 0 0 chr4 110462357 110462665 -73825997 + AluYa5 SINE Alu 1 308 -3 540 324 37 25 chr4 110462878 110463119 -73825543 - L2 LINE L2 -831 2483 2240 2029 137 0 7 chr4 110464190 110464489 -73824173 - AluSq SINE Alu -16 297 1 2442 198 35 19 chr4 110465772 110466313 -73822349 - MER44D DNA MER2_type 0 605 1 21 0 0 0 chr4 110466686 110466707 -73821955 + AT_rich Low_complexity Low_complexity 1 21 0 2568 65 0 0 chr4 110467102 110467411 -73821251 + AluY SINE Alu 1 309 -2 434 275 113 7 chr4 110467558 110467700 -73820962 + MIR SINE MIR 5 161 -101 1831 171 0 3 chr4 110468415 110468713 -73819949 - AluJb SINE Alu -15 297 1 659 291 122 52 chr4 110469373 110469895 -73818767 + L1M4b LINE L1 12 707 -6152 416 195 0 0 chr4 110469896 110469973 -73818689 + AluS SINE Alu 1 77 -222 488 226 22 111 chr4 110469974 110470200 -73818462 + L1M4b LINE L1 733 938 -5921 905 275 101 50 chr4 110470618 110471010 -73817652 - MLT1K LTR MaLR -5 583 160 2270 100 7 0 chr4 110471010 110471310 -73817352 + AluSx SINE Alu 1 302 -10 905 275 101 50 chr4 110471310 110471400 -73817262 - MLT1K LTR MaLR -428 160 76 650 245 168 0 chr4 110471844 110472052 -73816610 - MIR SINE MIR 0 262 20 628 328 39 13 chr4 110472931 110473163 -73815499 + MIR SINE MIR 4 241 -21 210 281 67 92 chr4 110473512 110473676 -73814986 - L2 LINE L2 -5 3308 3149 895 172 6 17 chr4 110473682 110473862 -73814800 + MLT1D LTR MaLR 1 178 -327 707 122 39 70 chr4 110473875 110474031 -73814631 - L1PA5 LINE L1 -1142 5004 4854 4641 110 30 101 chr4 110474032 110475238 -73813424 + L1PA5 LINE L1 5002 6145 -9 1165 123 20 0 chr4 110475257 110475452 -73813210 + L1PA16 LINE L1 5593 5791 -375 245 179 0 18 chr4 110475452 110475508 -73813154 + (TA)n Simple_repeat Simple_repeat 1 55 0 2373 129 11 11 chr4 110475518 110475891 -73812771 + L1PA16 LINE L1 5785 6157 -9 336 181 98 105 chr4 110476051 110476184 -73812478 - MER5C DNA MER1_type 0 324 193 369 205 79 24 chr4 110476198 110476325 -73812337 + MLT1D LTR MaLR 202 335 -170 870 115 13 13 chr4 110476445 110476602 -73812060 + (GGGGA)n Simple_repeat Simple_repeat 1 157 0 234 295 154 13 chr4 110476894 110477043 -73811619 + MLT1K LTR MaLR 102 271 -317 2397 117 14 22 chr4 110477151 110477518 -73811144 - THE1B LTR MaLR 0 364 1 1992 126 0 45 chr4 110477984 110478293 -73810369 - AluSx SINE Alu 0 312 18 717 213 0 22 chr4 110478950 110479086 -73809576 - FLAM_C SINE Alu 0 133 1 555 313 21 99 chr4 110479135 110479276 -73809386 + L3 LINE CR1 1153 1303 -274 1928 97 86 0 chr4 110479276 110479555 -73809107 + AluSq SINE Alu 1 303 -10 555 313 21 99 chr4 110479555 110479662 -73809000 + L3 LINE CR1 1303 1365 -212 1727 176 0 55 chr4 110479662 110479991 -73808671 - AluJo SINE Alu -1 311 1 555 313 21 99 chr4 110479991 110480115 -73808547 + L3 LINE CR1 1365 1497 -80 947 205 16 5 chr4 110480212 110480397 -73808265 - MER5A DNA MER1_type -2 187 1 404 296 14 14 chr4 110481782 110481924 -73806738 - LTR41 LTR ERVL -629 144 3 3756 195 46 28 chr4 110482053 110483452 -73805210 + L1MB7 LINE L1 4613 6058 -126 1752 189 3 3 chr4 110483452 110483748 -73804914 + AluJb SINE Alu 1 296 -16 3756 195 46 28 chr4 110483748 110483876 -73804786 + L1MB7 LINE L1 6058 6182 -2 183 184 0 0 chr4 110484963 110485001 -73803661 + GA-rich Low_complexity Low_complexity 2 39 0 288 253 13 0 chr4 110486116 110486191 -73802471 + MER94 DNA DNA 10 85 -49 241 313 26 26 chr4 110486389 110486504 -73802158 + MIR3 SINE MIR 89 203 -5 325 321 173 6 chr4 110486718 110486880 -73801782 - MIR SINE MIR -61 201 13 29 47 0 0 chr4 110487283 110487326 -73801336 + AT_rich Low_complexity Low_complexity 1 43 0 2166 127 7 0 chr4 110489123 110489415 -73799247 - AluSx SINE Alu -18 294 1 222 133 0 44 chr4 110489491 110489536 -73799126 - MER5B DNA MER1_type -14 164 122 246 225 42 42 chr4 110489544 110489615 -73799047 + MER5A DNA MER1_type 113 183 -6 296 286 138 95 chr4 110489686 110489738 -73798924 - L2 LINE L2 -4 3268 3220 2205 159 6 3 chr4 110489738 110490102 -73798560 - MLT1A1 LTR MaLR 0 365 1 296 286 138 95 chr4 110490102 110490374 -73798288 - L2 LINE L2 -52 3220 2930 231 315 66 47 chr4 110491740 110492045 -73796617 - Tigger8 DNA MER2_type -108 558 243 1654 185 0 33 chr4 110492045 110492348 -73796314 + AluJb SINE Alu 1 293 -19 231 315 66 47 chr4 110492348 110492423 -73796239 - Tigger8 DNA MER2_type -423 243 171 869 192 99 147 chr4 110493206 110493305 -73795357 - MLT1A1 LTR MaLR 0 365 263 2353 150 65 2 chr4 110493305 110493704 -73794958 + MSTB LTR MaLR 1 424 -2 869 192 99 147 chr4 110493704 110494020 -73794642 - MLT1A1 LTR MaLR -102 263 1 185 282 0 0 chr4 110494473 110494512 -73794150 - MIR SINE MIR -60 148 110 1663 204 0 3 chr4 110494670 110494955 -73793707 + AluSx SINE Alu 1 284 -28 2441 74 0 3 chr4 110495465 110495777 -73792885 - AluY SINE Alu 0 311 1 389 352 57 0 chr4 110495779 110495938 -73792724 - MIR3 SINE MIR -9 199 32 455 296 125 23 chr4 110496106 110496322 -73792340 - MLT1K LTR MaLR -168 420 183 2336 104 0 0 chr4 110496596 110496905 -73791757 + AluSg SINE Alu 1 309 -1 26 0 0 0 chr4 110496922 110496948 -73791714 + AT_rich Low_complexity Low_complexity 1 26 0 893 309 26 18 chr4 110496950 110497222 -73791440 + L3 LINE CR1 1293 1566 -11 21 57 0 0 chr4 110497384 110497419 -73791243 + AT_rich Low_complexity Low_complexity 1 35 0 309 295 115 37 chr4 110497624 110497830 -73790832 - L1ME4a LINE L1 -238 5883 5638 1558 142 45 0 chr4 110497830 110498119 -73790543 - L1MA7 LINE L1 0 6291 5990 309 295 115 37 chr4 110498119 110498261 -73790401 - L1ME4a LINE L1 -483 5638 5508 2234 108 3 0 chr4 110498520 110498816 -73789846 + AluSx SINE Alu 3 299 -13 1540 160 11 19 chr4 110499478 110499730 -73788932 + AluJb SINE Alu 36 287 -25 246 32 0 0 chr4 110499730 110499761 -73788901 + (CA)n Simple_repeat Simple_repeat 2 32 0 2408 83 0 0 chr4 110500665 110500965 -73787697 - AluSc SINE Alu -9 300 1 206 323 0 0 chr4 110501295 110501394 -73787268 + (TG)n Simple_repeat Simple_repeat 1 99 0 426 121 0 0 chr4 110502180 110502246 -73786416 + (TC)n Simple_repeat Simple_repeat 1 66 0 1369 123 64 0 chr4 110502246 110502481 -73786181 - AluJb SINE Alu -29 283 34 392 285 110 97 chr4 110502776 110503286 -73785376 - L1M2 LINE L1 -5657 1192 493 25 37 0 0 chr4 110503578 110503605 -73785057 + GC_rich Low_complexity Low_complexity 1 27 0 396 0 0 0 chr4 110503774 110503818 -73784844 + (TG)n Simple_repeat Simple_repeat 1 44 0 769 312 149 49 chr4 110506109 110506926 -73781736 - L2 LINE L2 -5 3267 2386 4415 199 63 29 chr4 110509027 110509356 -73779306 + L1MC3 LINE L1 6532 6848 -937 375 23 0 0 chr4 110509356 110509400 -73779262 + (CA)n Simple_repeat Simple_repeat 1 44 0 4415 199 63 29 chr4 110509400 110510242 -73778420 + L1MC3 LINE L1 6848 7743 -42 25 0 0 28 chr4 110510275 110510295 -73778367 + AT_rich Low_complexity Low_complexity 1 21 -14 2113 108 0 17 chr4 110510295 110510590 -73778072 + AluSx SINE Alu 1 290 -22 25 0 0 28 chr4 110510590 110510605 -73778057 + AT_rich Low_complexity Low_complexity 21 35 0 233 176 0 44 chr4 110510806 110510874 -73777788 + L1MD3 LINE L1 7007 7071 -924 2396 187 27 2 chr4 110511099 110511549 -73777113 - LTR32 LTR ERVL 0 471 11 26 0 0 0 chr4 110512292 110512318 -73776344 + AT_rich Low_complexity Low_complexity 1 26 0 2470 66 0 0 chr4 110513308 110513611 -73775051 - AluY SINE Alu -8 303 1 1768 142 20 0 chr4 110513945 110514241 -73774421 + L1MA6 LINE L1 5999 6300 0 196 376 35 57 chr4 110514408 110514549 -73774113 - L2 LINE L2 -2 3270 3133 22 35 0 0 chr4 110515119 110515148 -73773514 + AT_rich Low_complexity Low_complexity 1 29 0 349 214 56 8 chr4 110515172 110515298 -73773364 + L1ME4a LINE L1 5986 6117 -4 2183 153 54 9 chr4 110515788 110516251 -73772411 + L1MB7 LINE L1 5345 5828 -356 342 67 0 0 chr4 110516251 110516296 -73772366 + Alu SINE Alu 3 47 -254 13382 97 13 8 chr4 110516296 110518269 -73770393 + HERV9 LTR ERV1 1158 3139 -5260 4666 81 0 12 chr4 110518276 110518941 -73769721 + HERV9 LTR ERV1 4080 4736 -3663 471 229 55 106 chr4 110519154 110519372 -73769290 - MER63A DNA MER1_type 0 210 4 292 213 21 11 chr4 110519741 110519835 -73768827 + L1MC5 LINE L1 7837 7931 -30 24 53 0 0 chr4 110520226 110520264 -73768398 + AT_rich Low_complexity Low_complexity 1 38 0 328 268 0 41 chr4 110520597 110520694 -73767968 - MIR SINE MIR -120 142 50 24 0 0 0 chr4 110520759 110520783 -73767879 + AT_rich Low_complexity Low_complexity 1 24 0 2036 117 17 3 chr4 110520783 110521073 -73767589 + AluSq SINE Alu 1 294 -19 23 0 0 0 chr4 110521373 110521396 -73767266 + AT_rich Low_complexity Low_complexity 1 23 0 33 0 0 0 chr4 110521699 110521732 -73766930 + AT_rich Low_complexity Low_complexity 1 33 0 317 143 32 0 chr4 110521788 110521851 -73766811 - LTR50 LTR ERVL -21 774 710 1005 169 6 33 chr4 110521861 110522044 -73766618 + MER5A DNA MER1_type 12 189 0 1228 244 218 12 chr4 110522062 110522561 -73766101 - LTR50 LTR ERVL -181 614 13 22 0 0 0 chr4 110524060 110524082 -73764580 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 110524302 110524332 -73764330 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr4 110525409 110525444 -73763218 + AT_rich Low_complexity Low_complexity 1 35 0 2202 72 58 10 chr4 110525640 110525932 -73762730 + AluY SINE Alu 1 306 -5 1020 207 35 20 chr4 110526234 110526437 -73762225 - MER63A DNA MER1_type 0 210 5 2070 91 6 69 chr4 110526932 110527251 -73761411 + AluSp SINE Alu 1 299 -14 1117 325 81 58 chr4 110527338 110528502 -73760160 + L2 LINE L2 2079 3267 -5 22 0 0 0 chr4 110528857 110528879 -73759783 + AT_rich Low_complexity Low_complexity 1 22 0 14039 25 0 0 chr4 110528885 110531304 -73757358 - L1PA3 LINE L1 -3 6152 3734 2126 109 20 7 chr4 110531304 110531608 -73757054 - AluSc SINE Alu -1 308 1 723 254 69 14 chr4 110532930 110533261 -73755401 - LTR16A LTR ERVL -3 447 21 2141 108 16 0 chr4 110533421 110533727 -73754935 + AluY SINE Alu 1 311 0 462 276 199 15 chr4 110534533 110534729 -73753933 + MIR SINE MIR 30 261 -1 466 110 27 13 chr4 110535281 110535387 -73753275 + HERV17 LTR ERV1 4866 5051 -3206 * 1557 105 22 65 chr4 110535377 110535823 -73752839 + HERV17 LTR ERV1 706 1246 -5650 1352 81 0 0 chr4 110535814 110535999 -73752663 + LTR12 LTR ERV1 530 714 0 * 2051 69 0 0 chr4 110535999 110536246 -73752416 + AluY SINE Alu 58 304 -7 1865 133 56 26 chr4 110536246 110536585 -73752077 + L1MB7 LINE L1 5819 6167 -17 1814 154 17 17 chr4 110537362 110537654 -73751008 + AluJb SINE Alu 6 297 -15 2274 169 49 14 chr4 110537696 110538113 -73750549 - LOR1b LTR ERV1 0 461 26 2017 119 83 3 chr4 110538113 110538425 -73750237 - MER1B DNA MER1_type 0 337 1 2274 169 49 14 chr4 110538425 110538452 -73750210 - LOR1b LTR ERV1 -435 26 1 2225 202 118 18 chr4 110538491 110539006 -73749656 - MLT1F1 LTR MaLR 0 567 1 221 98 59 20 chr4 110540429 110540480 -73748182 + A-rich Low_complexity Low_complexity 3 55 0 24 0 0 0 chr4 110540741 110540765 -73747897 + AT_rich Low_complexity Low_complexity 1 24 0 413 230 34 20 chr4 110540930 110541078 -73747584 - L1M4 LINE L1 -1717 4429 4280 22 0 0 0 chr4 110541872 110541894 -73746768 + AT_rich Low_complexity Low_complexity 1 22 0 1302 216 7 20 chr4 110542654 110542959 -73745703 - MER58B DNA MER1_type -8 333 33 711 175 11 113 chr4 110543528 110543705 -73744957 - FRAM SINE Alu -17 159 1 383 295 67 27 chr4 110543707 110543856 -73744806 - L2 LINE L2 -10 3303 3149 406 337 54 24 chr4 110543858 110544063 -73744599 + HAL1 LINE L1 1516 1726 -781 356 229 8 41 chr4 110544109 110544143 -73744519 + L1MA10 LINE L1 6215 6249 -85 2166 166 82 7 chr4 110544143 110544572 -73744090 - LOR1b LTR ERV1 0 461 1 356 229 8 41 chr4 110544572 110544659 -73744003 + L1MA10 LINE L1 6249 6332 -2 22 0 0 0 chr4 110544663 110544685 -73743977 + AT_rich Low_complexity Low_complexity 1 22 0 184 389 89 11 chr4 110544798 110544888 -73743774 - L2 LINE L2 -168 3104 3008 829 255 10 5 chr4 110544905 110545101 -73743561 - MIR SINE MIR -2 260 64 490 318 112 32 chr4 110545919 110545970 -73742692 - HAL1 LINE L1 -870 1637 1592 1491 151 0 0 chr4 110545970 110546195 -73742467 - AluJb SINE Alu -4 308 84 490 318 112 32 chr4 110546195 110546517 -73742145 - HAL1 LINE L1 -915 1592 1234 2251 100 3 0 chr4 110546682 110546973 -73741689 - AluSc SINE Alu -17 292 1 487 144 220 8 chr4 110547061 110547179 -73741483 - MLT1H1 LTR MaLR 0 555 413 232 306 14 0 chr4 110547230 110547302 -73741360 - MLT1H1 LTR MaLR -232 363 291 980 226 31 34 chr4 110547328 110547724 -73740938 - L1MEc LINE L1 -3682 2447 2093 2231 160 55 27 chr4 110547732 110548319 -73740343 + pTR5 LTR ERV1 743 1345 -1093 4441 133 54 48 chr4 110548335 110549152 -73739510 + LTR12 LTR ERV1 5 826 0 2111 126 0 43 chr4 110549299 110549624 -73739038 - AluY SINE Alu 0 311 1 316 325 32 19 chr4 110549796 110549950 -73738712 - L1MEc LINE L1 -5415 704 549 1993 129 40 20 chr4 110549974 110550276 -73738386 - AluSx SINE Alu -4 308 1 348 283 53 9 chr4 110550482 110550595 -73738067 - L1MEc LINE L1 -5750 369 252 323 269 115 0 chr4 110550638 110550768 -73737894 + LTR50 LTR ERVL 73 217 -578 234 279 148 0 chr4 110550947 110551069 -73737593 + LTR50 LTR ERVL 503 642 -153 2805 25 0 0 chr4 110552840 110553157 -73735505 - AluYb8 SINE Alu -1 317 1 831 130 0 0 chr4 110553161 110553284 -73735378 - L1PA13 LINE L1 -3 6160 6038 1644 176 50 0 chr4 110553384 110553662 -73735000 - AluJb SINE Alu -20 292 1 672 203 0 8 chr4 110553742 110553865 -73734797 - FLAM_A SINE Alu -11 122 1 313 341 58 7 chr4 110554010 110554148 -73734514 + MIR3 SINE MIR 39 183 -25 1830 150 59 68 chr4 110554394 110554833 -73733829 + MER61C LTR ERV1 12 431 -3 348 241 151 48 chr4 110554913 110555265 -73733397 - L1ME4a LINE L1 -1 6120 5733 883 169 38 6 chr4 110555616 110555799 -73732863 - L1MD1 LINE L1 0 6242 6054 690 226 49 9 chr4 110555801 110556027 -73732635 - L1MD1 LINE L1 -257 5985 5751 2419 53 0 10 chr4 110559317 110559618 -73729044 - AluY SINE Alu -13 298 1 1079 166 97 9 chr4 110559620 110559837 -73728825 - MER46A DNA MER2_type 0 236 1 716 214 131 35 chr4 110560967 110561196 -73727466 - MIR SINE MIR 0 262 12 1951 173 0 0 chr4 110561860 110562160 -73726502 - AluSx SINE Alu -12 300 1 2225 101 3 3 chr4 110562567 110562865 -73725797 - AluSg SINE Alu -12 298 1 2092 137 10 13 chr4 110562905 110563218 -73725444 - AluJb SINE Alu 0 312 1 1183 186 18 5 chr4 110563375 110563596 -73725066 - MER58A DNA MER1_type 0 224 1 31 0 0 0 chr4 110563892 110563923 -73724739 + AT_rich Low_complexity Low_complexity 1 31 0 207 323 132 41 chr4 110564095 110564361 -73724301 + L2 LINE L2 2113 2402 -912 279 278 106 61 chr4 110565039 110565237 -73723425 + L2 LINE L2 2448 2654 -660 * 747 223 66 28 chr4 110565232 110565443 -73723219 + L2 LINE L2 3095 3313 0 247 68 23 23 chr4 110565534 110565578 -73723084 + U5 snRNA snRNA 1 44 -72 330 300 98 71 chr4 110565764 110566101 -73722561 + L2 LINE L2 2968 3313 0 192 326 80 29 chr4 110566100 110566238 -73722424 + L2 LINE L2 2892 3036 -236 * 201 219 0 0 chr4 110566526 110566567 -73722095 + L3 LINE CR1 1525 1565 -12 1449 172 181 88 chr4 110566758 110567234 -73721428 - MLT2B1 LTR ERVL 0 520 1 1854 168 97 27 chr4 110567912 110568316 -73720346 - MSTB1 LTR MaLR 0 432 1 533 279 85 53 chr4 110569130 110569507 -73719155 - L1ME3A LINE L1 -345 5825 5437 378 269 52 19 chr4 110569649 110569861 -73718801 + L1M4 LINE L1 4484 4702 -1444 187 311 156 0 chr4 110569951 110570041 -73718621 + MER5A DNA MER1_type 86 189 0 583 208 21 14 chr4 110570992 110571136 -73717526 - MER33 DNA MER1_type -179 145 1 242 216 112 78 chr4 110571136 110571252 -73717410 + MIR SINE MIR 131 250 -12 2127 125 7 0 chr4 110571738 110572033 -73716629 + AluSx SINE Alu 1 297 -15 888 296 77 4 chr4 110572993 110573240 -73715422 + L2 LINE L2 2375 2639 -675 349 287 22 33 chr4 110573271 110573422 -73715240 + L1MC4 LINE L1 7032 7255 -631 769 263 62 49 chr4 110573544 110574152 -73714510 + L1MC5 LINE L1 7292 7907 -54 781 292 74 38 chr4 110574196 110574527 -73714135 + L2 LINE L2 2735 3076 -237 2298 85 10 3 chr4 110574527 110574822 -73713840 + AluSp SINE Alu 3 299 -14 781 292 74 38 chr4 110574822 110574875 -73713787 + L2 LINE L2 3076 3126 -187 2129 91 28 0 chr4 110574892 110575177 -73713485 + AluSq SINE Alu 1 293 -20 344 121 0 0 chr4 110575193 110575251 -73713411 - L1PB4 LINE L1 -8 6148 6091 826 168 0 0 chr4 110575251 110575394 -73713268 + L1P5 LINE L1 5440 5582 -574 653 240 77 16 chr4 110575397 110575580 -73713082 + L2 LINE L2 3115 3308 -5 389 240 74 8 chr4 110575947 110576068 -73712594 - Zaphod DNA AcHobo -165 3866 3738 232 242 106 0 chr4 110576424 110576490 -73712172 - MLT1K LTR MaLR -2 586 514 1440 175 46 4 chr4 110577515 110577778 -73710884 + AluJo SINE Alu 34 307 -5 372 340 84 5 chr4 110579176 110579391 -73709271 - MIR SINE MIR 0 262 31 22 0 0 0 chr4 110579634 110579656 -73709006 + AT_rich Low_complexity Low_complexity 1 22 0 240 99 56 70 chr4 110580369 110580440 -73708222 + T-rich Low_complexity Low_complexity 4 73 0 2547 30 3 0 chr4 110580478 110580773 -73707889 - AluYa5 SINE Alu -15 296 1 658 211 32 0 chr4 110580956 110581079 -73707583 - FLAM_A SINE Alu -6 127 1 292 265 47 30 chr4 110581359 110581493 -73707169 + MIR3 SINE MIR 37 172 -36 2775 199 63 14 chr4 110582315 110582937 -73705725 + MER82 DNA MER2_type 2 653 0 256 327 87 20 chr4 110583374 110583524 -73705138 + MIR SINE MIR 56 215 -47 22 0 0 0 chr4 110583716 110583738 -73704924 + AT_rich Low_complexity Low_complexity 1 22 0 400 311 67 0 chr4 110583847 110583966 -73704696 - L2 LINE L2 -9 3263 3137 624 203 19 25 chr4 110584188 110584346 -73704316 + L1ME2 LINE L1 5998 6154 -10 500 316 108 22 chr4 110584367 110584813 -73703849 - L2 LINE L2 -1028 2286 1803 829 232 103 21 chr4 110584818 110585051 -73703611 + MIR SINE MIR 8 259 -3 1855 163 3 0 chr4 110586677 110586966 -73701696 + AluJb SINE Alu 14 303 -9 1469 186 7 14 chr4 110587221 110587500 -73701162 + AluJb SINE Alu 22 298 -14 182 61 0 61 chr4 110587503 110587536 -73701126 + (CATATA)n Simple_repeat Simple_repeat 6 36 0 1533 193 29 0 chr4 110587552 110587832 -73700830 + AluJo SINE Alu 5 292 -20 31 26 0 0 chr4 110588392 110588430 -73700232 + AT_rich Low_complexity Low_complexity 1 38 0 670 250 112 5 chr4 110589209 110589405 -73699257 - MIR SINE MIR -3 259 43 199 328 90 52 chr4 110589919 110590053 -73698609 - MIR SINE MIR -68 194 56 198 377 29 0 chr4 110592585 110592654 -73696008 - L3 LINE CR1 -1037 540 470 918 288 17 5 chr4 110593008 110593268 -73695394 + MIR SINE MIR 2 262 0 34 42 0 0 chr4 110594582 110594630 -73694032 + AT_rich Low_complexity Low_complexity 1 48 0 1077 300 82 81 chr4 110595764 110596593 -73692069 - L2 LINE L2 -4 3309 2465 953 268 85 46 chr4 110596601 110597097 -73691565 + REP3 LTR ERV 1 515 -47 730 267 289 16 chr4 110597177 110597727 -73690935 - L2 LINE L2 -923 2391 1692 702 260 161 71 chr4 110597818 110598314 -73690348 + MER50 LTR ERV1 171 711 -23 24 67 0 0 chr4 110598695 110598740 -73689922 + AT_rich Low_complexity Low_complexity 1 45 0 340 308 231 0 chr4 110598836 110599031 -73689631 - MIR SINE MIR -20 242 3 2324 91 3 0 chr4 110599123 110599419 -73689243 + AluSp SINE Alu 1 297 -16 607 96 0 11 chr4 110599573 110599667 -73688995 + HY1 scRNA scRNA 18 110 -2 234 200 0 50 chr4 110600146 110600206 -73688456 + L1ME4a LINE L1 5984 6040 -81 23 54 0 0 chr4 110600215 110600252 -73688410 + AT_rich Low_complexity Low_complexity 1 37 0 1169 192 103 83 chr4 110601548 110602043 -73686619 - MLT1D LTR MaLR 0 505 1 24 0 0 0 chr4 110602438 110602462 -73686200 + AT_rich Low_complexity Low_complexity 1 24 0 271 248 45 23 chr4 110605137 110605179 -73683483 - L1MC4a LINE L1 -1878 5930 5890 2129 118 16 7 chr4 110605179 110605485 -73683177 - AluSx SINE Alu -3 309 1 271 248 45 23 chr4 110605485 110605575 -73683087 - L1MC4a LINE L1 -1918 5890 5795 1906 128 29 29 chr4 110605855 110606167 -73682495 - AluSx SINE Alu 0 312 1 526 281 109 15 chr4 110607167 110607434 -73681228 + MLT1I LTR MaLR 118 409 0 2669 89 5 19 chr4 110607479 110607848 -73680814 + THE1B LTR MaLR 1 364 0 336 318 158 15 chr4 110607854 110607919 -73680743 - MIR SINE MIR 0 262 208 1538 174 120 115 chr4 110607919 110608527 -73680135 + LTR36 LTR ERV1 1 611 0 336 318 158 15 chr4 110608527 110608706 -73679956 - MIR SINE MIR -54 208 8 290 67 22 0 chr4 110609803 110609848 -73678814 + (CA)n Simple_repeat Simple_repeat 2 47 0 180 264 139 39 chr4 110610266 110610395 -73678267 - MIR3 SINE MIR -22 186 45 679 79 10 0 chr4 110611876 110611977 -73676685 - AluSg/x SINE Alu -4 306 205 2083 118 0 3 chr4 110612242 110612529 -73676133 + AluSg SINE Alu 3 288 -22 3048 127 26 12 chr4 110612573 110613068 -73675594 - MER1A DNA MER1_type -27 502 1 2076 137 0 22 chr4 110615280 110615594 -73673068 + AluSx SINE Alu 1 307 -5 926 208 223 94 chr4 110616102 110616299 -73672363 + MLT1E1 LTR MaLR 1 171 -483 1792 159 40 7 chr4 110616299 110616600 -73672062 - AluSx SINE Alu -1 311 1 926 208 223 94 chr4 110616600 110616935 -73671727 + MLT1E1 LTR MaLR 171 602 -52 291 194 15 30 chr4 110617073 110617140 -73671522 + MLT1E1 LTR MaLR 559 624 0 1694 159 72 0 chr4 110617469 110617746 -73670916 - AluJb SINE Alu -9 303 7 2288 84 3 0 chr4 110618219 110618527 -73670135 - AluSq SINE Alu 0 309 1 295 306 41 29 chr4 110618554 110618724 -73669938 + L2 LINE L2 1852 2023 -1291 481 193 101 8 chr4 110618725 110618844 -73669818 + MER45A DNA AcHobo 5 134 -44 214 358 57 21 chr4 110619038 110619231 -73669431 + L2 LINE L2 2461 2660 -654 2383 94 0 0 chr4 110619347 110619656 -73669006 - AluSg1 SINE Alu 0 309 1 2778 209 117 61 chr4 110620322 110620546 -73668116 - Charlie2a DNA MER1_type -8 2854 2644 1778 139 23 66 chr4 110620546 110620847 -73667815 + AluJb SINE Alu 1 288 -24 2778 209 117 61 chr4 110620847 110621039 -73667623 - Charlie2a DNA MER1_type -218 2644 2464 2082 90 39 0 chr4 110621039 110621318 -73667344 + AluSq SINE Alu 1 290 -23 2778 209 117 61 chr4 110621318 110621343 -73667319 - Charlie2a DNA MER1_type -398 2464 2442 2355 93 10 3 chr4 110621343 110621654 -73667008 + AluSq SINE Alu 1 313 0 2778 209 117 61 chr4 110621654 110622514 -73666148 - Charlie2a DNA MER1_type -420 2442 1477 236 246 0 0 chr4 110622596 110622657 -73666005 - Charlie2b DNA MER1_type -2147 635 575 225 65 0 0 chr4 110623771 110623802 -73664860 + (TC)n Simple_repeat Simple_repeat 2 32 0 452 183 0 0 chr4 110625006 110625099 -73663563 - MER113 DNA MER1_type? -417 104 12 240 250 128 32 chr4 110625516 110625672 -73662990 + L1ME LINE L1 5624 5794 -327 29 0 0 0 chr4 110625874 110625903 -73662759 + AT_rich Low_complexity Low_complexity 1 29 0 222 37 0 0 chr4 110627257 110627284 -73661378 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 438 155 0 71 chr4 110627284 110627368 -73661294 - AluJb SINE Alu -32 280 203 236 345 68 16 chr4 110627802 110627993 -73660669 + L2 LINE L2 1178 1378 -1936 213 94 0 0 chr4 110628243 110628275 -73660387 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 371 354 129 21 chr4 110628287 110629113 -73659549 + L2 LINE L2 1723 2638 -676 448 50 0 0 chr4 110629233 110629293 -73659369 - L1PA6 LINE L1 0 6154 6095 38708 52 2 0 chr4 110629293 110635114 -73653548 - L1PA5 LINE L1 -26 6443 612 612 117 11 0 chr4 110635099 110635193 -73653469 - L1PA5 LINE L1 -6365 96 2 * 356 280 50 0 chr4 110635529 110635629 -73653033 + L2 LINE L2 3208 3312 -1 488 291 50 6 chr4 110636153 110636332 -73652330 + MIR SINE MIR 42 228 -34 187 256 0 0 chr4 110636437 110636476 -73652186 - L3 LINE CR1 -2 1575 1537 * 532 281 65 13 chr4 110636444 110636597 -73652065 - MIR3 SINE MIR -5 203 43 213 262 87 19 chr4 110636825 110636928 -73651734 - MIR SINE MIR -5 257 148 2357 68 3 0 chr4 110637795 110638089 -73650573 - AluY SINE Alu -16 295 1 2567 252 339 30 chr4 110638591 110638958 -73649704 - L2 LINE L2 -1000 2314 2061 2086 128 0 3 chr4 110638958 110639248 -73649414 + AluSx SINE Alu 1 289 -23 2567 252 339 30 chr4 110639248 110640354 -73648308 - L2 LINE L2 -1253 2061 387 2286 102 10 7 chr4 110640394 110640699 -73647963 - AluSx SINE Alu -6 306 1 3830 149 101 4 chr4 110641541 110642325 -73646337 - L1MB3 LINE L1 -7 6176 5317 2538 220 46 7 chr4 110642575 110643270 -73645392 - L1MB3 LINE L1 -811 5335 4614 196 312 172 0 chr4 110643684 110643777 -73644885 - L2 LINE L2 0 3272 3164 435 257 82 55 chr4 110643825 110644008 -73644654 - MIR SINE MIR -55 207 20 227 367 62 8 chr4 110644192 110644320 -73644342 - L2 LINE L2 0 3272 3138 197 348 99 46 chr4 110644469 110644814 -73643848 - L2 LINE L2 -509 2805 2443 8341 197 18 8 chr4 110644927 110646407 -73642255 - L1 LINE L1 -1348 4798 3293 2372 78 0 3 chr4 110646407 110646714 -73641948 - AluY SINE Alu -5 306 1 8341 197 18 8 chr4 110646714 110647164 -73641498 - L1 LINE L1 -2853 3293 2849 634 221 0 29 chr4 110648022 110648158 -73640504 - L2 LINE L2 -11 3302 3171 279 333 114 0 chr4 110648899 110649013 -73639649 + L2 LINE L2 3136 3262 -10 1384 221 47 62 chr4 110649263 110649563 -73639099 - LTR40c LTR ERVL 0 465 162 2576 62 0 0 chr4 110649563 110649869 -73638793 + AluY SINE Alu 1 306 -5 1384 221 47 62 chr4 110649869 110649962 -73638700 - LTR40c LTR ERVL -303 162 78 1443 214 10 13 chr4 110649962 110650294 -73638368 - AluJo SINE Alu 0 312 1 1384 221 47 62 chr4 110650294 110650369 -73638293 - LTR40c LTR ERVL -387 78 3 219 158 0 0 chr4 110650401 110650439 -73638223 + L2 LINE L2 3267 3304 -9 352 189 54 90 chr4 110651923 110652034 -73636628 + L2 LINE L2 3207 3313 0 484 297 136 25 chr4 110652666 110652902 -73635760 + MIR SINE MIR 1 262 0 1542 180 0 54 chr4 110652945 110653262 -73635400 - AluJo SINE Alu -12 300 1 351 361 62 37 chr4 110654418 110654659 -73634003 + L2 LINE L2 3026 3272 0 222 209 23 0 chr4 110655359 110655402 -73633260 + L2 LINE L2 3265 3308 -5 3348 305 76 32 chr4 110656077 110658140 -73630522 - HERVL LTR ERVL -865 4789 2637 1046 308 42 14 chr4 110658123 110658551 -73630111 - HERVL LTR ERVL -3540 2224 1785 * 257 200 158 42 chr4 110658654 110658749 -73629913 - HERVL LTR ERVL -4113 1651 1546 189 78 20 39 chr4 110659411 110659462 -73629200 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 22 0 0 0 chr4 110659481 110659503 -73629159 + AT_rich Low_complexity Low_complexity 1 22 0 263 182 0 30 chr4 110659548 110659614 -73629048 - L1ME2 LINE L1 -66 6098 6035 2305 128 0 0 chr4 110659668 110659980 -73628682 + AluSx SINE Alu 1 312 0 2158 93 10 23 chr4 110660498 110660799 -73627863 + AluSp SINE Alu 5 301 -12 234 0 0 0 chr4 110661517 110661543 -73627119 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 514 157 0 45 chr4 110661589 110661678 -73626984 + L2 LINE L2 3229 3313 0 221 279 49 0 chr4 110661940 110662001 -73626661 + MIR SINE MIR 86 149 -113 279 238 0 12 chr4 110662206 110662286 -73626376 - L1 LINE L1 -2445 3701 3623 29 60 0 0 chr4 110662665 110662715 -73625947 + AT_rich Low_complexity Low_complexity 1 50 0 1626 200 6 31 chr4 110662930 110663250 -73625412 + AluJo SINE Alu 1 312 0 33 0 0 0 chr4 110663268 110663301 -73625361 + AT_rich Low_complexity Low_complexity 1 33 0 2162 113 3 0 chr4 110663492 110663783 -73624879 - AluSx SINE Alu -20 292 1 23 33 0 0 chr4 110665050 110665080 -73623582 + AT_rich Low_complexity Low_complexity 1 30 0 180 77 0 0 chr4 110666624 110666650 -73622012 + (TG)n Simple_repeat Simple_repeat 2 27 0 639 292 49 5 chr4 110668232 110668417 -73620245 - MIR SINE MIR -51 211 19 482 235 86 31 chr4 110670149 110670311 -73618351 + MIR SINE MIR 9 179 -83 662 205 16 90 chr4 110671168 110671403 -73617259 - L1MC5 LINE L1 -36 7925 7717 2176 98 4 0 chr4 110671403 110671680 -73616982 - AluSp SINE Alu -35 278 1 662 205 16 90 chr4 110671680 110671756 -73616906 - L1MC5 LINE L1 -244 7717 7637 275 108 0 0 chr4 110674720 110674757 -73613905 + MADE1 DNA Mariner 43 79 -1 21 0 0 0 chr4 110674902 110674923 -73613739 + AT_rich Low_complexity Low_complexity 1 21 0 403 296 26 0 chr4 110674944 110675059 -73613603 - MIR SINE MIR -3 259 142 2138 118 3 0 chr4 110675080 110675369 -73613293 - AluY SINE Alu -21 290 1 371 255 184 0 chr4 110675494 110675592 -73613070 - MIR SINE MIR -130 132 17 2164 129 10 0 chr4 110676989 110677291 -73611371 - AluSx SINE Alu -7 305 1 1339 158 14 25 chr4 110677918 110678225 -73610437 + MER2 DNA MER2_type 1 345 0 266 246 184 18 chr4 110678282 110678396 -73610266 - L1ME3A LINE L1 -265 6141 6009 1953 160 3 16 chr4 110678397 110678792 -73609870 - AluJb SINE Alu 0 391 1 1080 269 62 32 chr4 110678792 110679103 -73609559 - L1ME3A LINE L1 -378 6020 5720 2043 138 0 3 chr4 110679103 110679420 -73609242 + AluSx SINE Alu 1 316 0 1080 269 62 32 chr4 110679420 110679876 -73608786 - L1ME3A LINE L1 -678 5720 5221 2009 155 0 7 chr4 110679973 110680283 -73608379 - AluSx SINE Alu -2 310 3 23 33 0 0 chr4 110680325 110680355 -73608307 + AT_rich Low_complexity Low_complexity 1 30 0 379 237 130 122 chr4 110680388 110680742 -73607920 - L1ME3A LINE L1 -1447 4935 4579 259 180 66 0 chr4 110681049 110681110 -73607552 - L2 LINE L2 -685 2629 2565 2748 128 12 53 chr4 110685430 110685924 -73602738 - L1MA8 LINE L1 -142 6149 5676 634 115 0 0 chr4 110685980 110686067 -73602595 - L1M2 LINE L1 -539 5752 5666 394 263 43 52 chr4 110686261 110686501 -73602161 - L1ME3A LINE L1 -4807 1756 1369 310 278 42 0 chr4 110686506 110686578 -73602084 - MER2 DNA MER2_type -2 343 269 1277 126 5 5 chr4 110686588 110686787 -73601875 + L1PB1 LINE L1 2 200 -6663 15205 146 55 7 chr4 110686789 110692725 -73595937 + L1PB1 LINE L1 636 6867 0 464 228 99 40 chr4 110692702 110692904 -73595758 + L1ME4a LINE L1 6568 6781 -56 * 23 92 0 0 chr4 110692924 110692989 -73595673 + AT_rich Low_complexity Low_complexity 1 65 0 839 173 173 0 chr4 110692994 110693173 -73595489 - MER2 DNA MER2_type -134 211 2 1061 279 91 89 chr4 110693194 110693422 -73595240 - L1ME3A LINE L1 -4924 1448 1222 1981 112 0 53 chr4 110693422 110693726 -73594936 - AluSx SINE Alu -15 297 10 1061 279 91 89 chr4 110693726 110694688 -73593974 - L1ME3A LINE L1 -5150 1222 256 1191 117 6 6 chr4 110695050 110695221 -73593441 + AluSg/x SINE Alu 133 303 -9 338 360 43 46 chr4 110696585 110697111 -73591551 + L2 LINE L2 2491 3065 -248 199 330 85 17 chr4 110697439 110697557 -73591105 - MIR3 SINE MIR -17 191 66 2261 102 13 0 chr4 110697721 110698026 -73590636 - AluY SINE Alu -2 309 1 1717 136 110 10 chr4 110698041 110698394 -73590268 - L1MA8 LINE L1 -1 6290 5903 285 290 32 21 chr4 110698933 110699026 -73589636 - L3 LINE CR1 -4 1573 1480 14541 127 15 36 chr4 110699046 110699128 -73589534 - Tigger1 DNA MER2_type 0 2418 2336 696 200 42 0 chr4 110699128 110699248 -73589414 + FLAM_C SINE Alu 2 126 -7 14541 127 15 36 chr4 110699248 110700692 -73587970 - Tigger1 DNA MER2_type -82 2336 955 1466 145 5 0 chr4 110700692 110700913 -73587749 - AluJo SINE Alu -6 306 85 14541 127 15 36 chr4 110700913 110701715 -73586947 - Tigger1 DNA MER2_type -1463 955 138 416 239 80 26 chr4 110705597 110705710 -73582952 + MER94 DNA DNA 15 133 -1 256 316 56 82 chr4 110706318 110706587 -73582075 - L2 LINE L2 -86 3186 2925 483 365 29 4 chr4 110706732 110706973 -73581689 - L2 LINE L2 -792 2522 2276 743 268 109 20 chr4 110707014 110707316 -73581346 - MER46C DNA MER2_type -7 331 3 219 69 0 0 chr4 110707799 110707828 -73580834 + (T)n Simple_repeat Simple_repeat 1 29 0 31 44 0 0 chr4 110708798 110708843 -73579819 + AT_rich Low_complexity Low_complexity 1 45 0 1919 152 56 48 chr4 110709250 110709605 -73579057 - MER47A DNA MER2_type 0 366 9 279 309 62 21 chr4 110709616 110709713 -73578949 - MIR SINE MIR -105 157 57 1033 180 24 29 chr4 110709828 110710034 -73578628 + MER3 DNA MER1_type 5 209 0 753 220 43 27 chr4 110710042 110710228 -73578434 + MER5A DNA MER1_type 1 189 0 228 289 13 26 chr4 110710852 110710928 -73577734 - MIR SINE MIR -121 141 67 21 0 0 0 chr4 110713197 110713218 -73575444 + AT_rich Low_complexity Low_complexity 1 21 0 2796 82 8 0 chr4 110713294 110713650 -73575012 - L1PA13 LINE L1 -4 6159 5801 286 255 59 39 chr4 110714179 110714281 -73574381 - L2 LINE L2 0 3272 3169 293 218 197 21 chr4 110714349 110714491 -73574171 - MIR SINE MIR -12 250 84 2213 101 0 7 chr4 110714565 110714861 -73573801 - AluSc SINE Alu -15 294 1 345 325 179 11 chr4 110715260 110715617 -73573045 + L2 LINE L2 2311 2727 -587 331 282 70 132 chr4 110715690 110716076 -73572586 + L2 LINE L2 2856 3217 -55 323 44 22 0 chr4 110716102 110716147 -73572515 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 377 303 89 18 chr4 110716589 110716813 -73571849 + MLT1I LTR MaLR 49 258 -151 1589 231 92 17 chr4 110716947 110717350 -73571312 + MLT1C LTR MaLR 1 433 -34 554 324 57 57 chr4 110717657 110717993 -73570669 + L2 LINE L2 2281 2616 -698 258 109 0 0 chr4 110718000 110718046 -73570616 - MADE1 DNA Mariner 0 80 35 1504 179 3 34 chr4 110718050 110718346 -73570316 - AluJb SINE Alu -23 289 3 1076 263 71 42 chr4 110718399 110718780 -73569882 - MLT1I LTR MaLR 0 409 18 200 33 0 33 chr4 110719447 110719477 -73569185 + (TA)n Simple_repeat Simple_repeat 1 29 0 556 283 17 29 chr4 110719504 110719677 -73568985 - MIR3 SINE MIR -4 204 34 22 0 0 0 chr4 110719961 110719983 -73568679 + AT_rich Low_complexity Low_complexity 1 22 0 319 197 28 0 chr4 110720554 110720625 -73568037 - MER116 DNA Mariner -2 78 6 260 276 57 48 chr4 110720644 110720749 -73567913 - MIR SINE MIR -72 190 85 1404 231 174 22 chr4 110720979 110721577 -73567085 - Charlie7 DNA MER1_type 0 2612 1924 426 258 247 0 chr4 110721694 110721880 -73566782 - Charlie7 DNA MER1_type -895 1717 1486 390 198 121 17 chr4 110722023 110722139 -73566523 - Charlie7 DNA MER1_type -2418 194 67 342 285 124 34 chr4 110722209 110722287 -73566375 - MIR SINE MIR -13 249 179 1772 192 3 0 chr4 110722287 110722594 -73566068 - AluSx SINE Alu -4 308 1 342 285 124 34 chr4 110722594 110722690 -73565972 - MIR SINE MIR -83 179 59 588 90 0 13 chr4 110722927 110723005 -73565657 + MADE1 DNA Mariner 1 77 -3 253 327 9 35 chr4 110723329 110723442 -73565220 - MER5A DNA MER1_type -38 151 42 2452 283 155 27 chr4 110723468 110723806 -73564856 - L2 LINE L2 -157 3156 2863 1678 148 3 50 chr4 110723806 110724103 -73564559 - AluJo SINE Alu -16 296 14 2452 283 155 27 chr4 110724103 110725099 -73563563 - L2 LINE L2 -450 2863 1996 1933 66 0 0 chr4 110725099 110725342 -73563320 - L1PA8 LINE L1 -1 6171 5929 4979 56 0 0 chr4 110725103 110725679 -73562983 - L1PA8 LINE L1 -5 6167 5592 2452 283 155 27 chr4 110725342 110726145 -73562517 - L2 LINE L2 -1317 1996 1125 802 194 19 6 chr4 110726512 110726672 -73561990 - MER5B DNA MER1_type -5 173 12 1122 302 50 22 chr4 110726684 110727144 -73561518 - L2 LINE L2 -2187 1127 655 213 214 0 0 chr4 110728128 110728170 -73560492 + (TG)n Simple_repeat Simple_repeat 1 42 0 533 289 107 5 chr4 110729860 110730057 -73558605 - MIR SINE MIR -12 250 34 2257 231 66 17 chr4 110730138 110730741 -73557921 - L1MEc LINE L1 -5483 913 281 2158 129 0 3 chr4 110731090 110731392 -73557270 - AluSg SINE Alu -9 301 1 3983 152 25 14 chr4 110731498 110731960 -73556702 + L1MB2 LINE L1 5494 5968 -203 4514 122 52 12 chr4 110731960 110732640 -73556022 + MER39 LTR ERV1 1 707 0 3983 152 25 14 chr4 110732640 110732843 -73555819 + L1MB2 LINE L1 5968 6167 -4 944 159 13 13 chr4 110732851 110733002 -73555660 + FRAM SINE Alu 2 152 -14 21 36 0 0 chr4 110733002 110733030 -73555632 + AT_rich Low_complexity Low_complexity 1 28 0 234 299 58 0 chr4 110733038 110733125 -73555537 + MIR SINE MIR 44 135 -73 2253 107 3 3 chr4 110733345 110733644 -73555018 + AluSg SINE Alu 2 300 -10 2162 123 0 10 chr4 110733991 110734291 -73554371 - AluSx SINE Alu -15 297 1 489 172 43 26 chr4 110735636 110735752 -73552910 - L1MEc LINE L1 -5979 417 300 793 267 53 13 chr4 110735784 110736009 -73552653 + MIR SINE MIR 22 255 -7 2244 103 0 0 chr4 110736741 110737042 -73551620 - AluSx SINE Alu -11 301 1 1829 176 7 0 chr4 110738934 110739236 -73549426 - AluJb SINE Alu -8 304 1 2198 114 0 3 chr4 110739842 110740139 -73548523 + AluSq SINE Alu 1 296 -17 583 302 83 48 chr4 110740416 110740873 -73547789 + L1MEd LINE L1 241 713 -5406 2159 120 13 3 chr4 110740873 110741182 -73547480 + AluSx SINE Alu 1 312 0 520 243 78 19 chr4 110741407 110741597 -73547065 - MER5C DNA MER1_type -94 230 29 340 240 231 0 chr4 110741597 110741701 -73546961 - MER5A DNA MER1_type -1 188 61 330 329 66 7 chr4 110741880 110742032 -73546630 + L1MEd LINE L1 983 1143 -4976 1910 159 0 7 chr4 110742109 110742411 -73546251 + AluJo SINE Alu 1 300 -12 371 301 83 15 chr4 110742447 110742674 -73545988 + L1MEd LINE L1 1183 1631 -859 433 289 61 51 chr4 110742833 110742997 -73545665 + L1M4 LINE L1 3665 3835 -2311 1872 176 3 0 chr4 110742997 110743303 -73545359 - AluJo SINE Alu -5 307 1 433 289 61 51 chr4 110743303 110743450 -73545212 + L1M4 LINE L1 3835 3979 -2167 1508 223 57 131 chr4 110743453 110744257 -73544405 - LTR41 LTR ERVL -16 757 13 623 316 68 12 chr4 110744280 110744603 -73544059 + L1M4 LINE L1 3973 4313 -1833 220 319 0 0 chr4 110744806 110744875 -73543787 - L2 LINE L2 -1 3312 3244 314 237 10 0 chr4 110744993 110745090 -73543572 + GA-rich Low_complexity Low_complexity 2 99 0 223 262 341 8 chr4 110745339 110745465 -73543197 + MIR SINE MIR 89 256 -6 201 74 0 0 chr4 110745466 110745493 -73543169 + (TTA)n Simple_repeat Simple_repeat 1 27 0 383 192 141 20 chr4 110745493 110745586 -73543076 + L2 LINE L2 3166 3270 -2 * 629 295 14 19 chr4 110745585 110745795 -73542867 - L2 LINE L2 -13 3300 3092 264 217 0 17 chr4 110745796 110745856 -73542806 - MLT1H1 LTR MaLR 0 555 497 227 261 201 54 chr4 110745890 110746074 -73542588 - MLT1G1-int LTR MaLR -26 1345 1135 258 32 0 0 chr4 110746351 110746382 -73542280 + (GA)n Simple_repeat Simple_repeat 2 32 0 2080 101 4 0 chr4 110746382 110746649 -73542013 - AluSx SINE Alu -44 268 1 4694 139 53 4 chr4 110747117 110747816 -73540846 - MER44D DNA MER2_type 0 605 1 267 372 17 21 chr4 110747817 110748056 -73540606 - MLT1G1-int LTR MaLR -833 538 301 1086 249 206 30 chr4 110748123 110748622 -73540040 - MLT1G1 LTR MaLR -8 587 1 941 306 18 22 chr4 110748640 110748915 -73539747 - L2 LINE L2 -236 3077 2804 233 282 94 12 chr4 110749625 110749710 -73538952 + MIR SINE MIR 39 130 -132 1057 225 101 51 chr4 110750372 110750767 -73537895 + LTR52 LTR ERVL 2 416 -5 296 328 140 17 chr4 110750803 110751071 -73537591 - L2 LINE L2 -264 3049 2753 21 36 0 0 chr4 110751753 110751781 -73536881 + AT_rich Low_complexity Low_complexity 1 28 0 411 157 0 0 chr4 110752796 110752866 -73535796 + L1MA7 LINE L1 6203 6272 -19 37 52 0 0 chr4 110752889 110752947 -73535715 + AT_rich Low_complexity Low_complexity 1 58 0 272 258 0 0 chr4 110753361 110753427 -73535235 + L2 LINE L2 3207 3272 0 338 275 20 60 chr4 110753664 110753813 -73534849 - MIR SINE MIR -89 173 31 638 265 79 43 chr4 110754038 110754317 -73534345 + L2 LINE L2 3025 3313 0 242 303 0 15 chr4 110755004 110755070 -73533592 - MER5A DNA MER1_type 0 189 125 1974 164 0 19 chr4 110755070 110755419 -73533243 + AluJb SINE Alu 2 344 0 370 360 0 8 chr4 110755422 110755547 -73533115 + MER5A DNA MER1_type 66 189 0 1681 183 88 6 chr4 110758696 110759024 -73529638 - MLT1A1 LTR MaLR -10 355 1 557 240 53 18 chr4 110759318 110759489 -73529173 - MER5B DNA MER1_type -1 177 1 377 321 150 62 chr4 110761095 110761594 -73527068 + L1MEd LINE L1 10 552 -5567 779 201 25 6 chr4 110761739 110761898 -73526764 - MIR SINE MIR -31 231 70 1927 195 96 19 chr4 110761919 110762335 -73526327 + MLT1C LTR MaLR 15 462 -5 426 281 62 26 chr4 110762356 110762548 -73526114 + L1MEd LINE L1 1057 1255 -4864 412 281 19 3 chr4 110762609 110762775 -73525887 + L1M1 LINE L1 2679 2923 -4802 520 327 82 62 chr4 110764299 110764651 -73524011 - L3 LINE CR1 -19 1558 1200 185 388 31 0 chr4 110764748 110764846 -73523816 - MIR SINE MIR 0 262 162 502 289 162 20 chr4 110764979 110765183 -73523479 - MIR SINE MIR -29 233 1 26 0 0 0 chr4 110765405 110765431 -73523231 + AT_rich Low_complexity Low_complexity 1 26 0 339 301 44 0 chr4 110765943 110766056 -73522606 + L2 LINE L2 3196 3313 0 303 28 0 0 chr4 110766330 110766366 -73522296 + (TG)n Simple_repeat Simple_repeat 2 37 0 700 330 51 22 chr4 110766683 110767038 -73521624 + MLT1I LTR MaLR 13 377 -32 314 112 28 41 chr4 110767341 110767391 -73521271 - L1PA13 LINE L1 -385 5776 5727 2912 81 46 15 chr4 110767391 110767435 -73521227 + L1PA13 LINE L1 5757 5798 -365 2263 112 76 25 chr4 110767435 110767792 -73520870 - THE1C LTR MaLR 0 375 1 2912 81 46 15 chr4 110767792 110768136 -73520526 + L1PA13 LINE L1 5798 6163 0 314 112 28 41 chr4 110768136 110768151 -73520511 - L1P3 LINE L1 -434 5727 5718 512 143 31 20 chr4 110768151 110768249 -73520413 + L1MB7 LINE L1 6086 6184 0 314 112 28 41 chr4 110768249 110768266 -73520396 - L1P3 LINE L1 -443 5718 5702 568 279 7 7 chr4 110768675 110768811 -73519851 + LTR16B LTR ERVL 30 165 -299 1294 129 181 48 chr4 110768885 110769156 -73519506 + AluSg1 SINE Alu 1 307 -2 478 279 79 18 chr4 110769156 110769321 -73519341 + LTR16B LTR ERVL 290 464 0 575 280 20 55 chr4 110769345 110769638 -73519024 + L1M4 LINE L1 3850 4132 -2014 423 236 19 0 chr4 110769623 110769729 -73518933 + L1MC5 LINE L1 7117 7224 -737 * 265 210 111 0 chr4 110769970 110770051 -73518611 + L1MC5 LINE L1 7840 7929 -32 996 237 23 18 chr4 110770318 110770537 -73518125 + MER58A DNA MER1_type 3 222 -2 617 248 62 16 chr4 110771165 110771407 -73517255 + L1MEd LINE L1 896 1148 -4971 681 254 24 6 chr4 110771434 110771603 -73517059 - L2 LINE L2 -1295 2019 1848 1189 173 62 4 chr4 110771613 110771838 -73516824 - MLT1E LTR MaLR -1 592 355 24 0 0 0 chr4 110771847 110771871 -73516791 + AT_rich Low_complexity Low_complexity 1 24 0 219 258 0 0 chr4 110772238 110772300 -73516362 + L2 LINE L2 2997 3058 -214 1844 186 82 86 chr4 110772450 110772988 -73515674 - MLT1F LTR MaLR 0 542 7 22 70 0 0 chr4 110774729 110774772 -73513890 + AT_rich Low_complexity Low_complexity 1 43 0 180 0 0 0 chr4 110775459 110775479 -73513183 + (CAGGC)n Simple_repeat Simple_repeat 4 23 0 577 257 87 16 chr4 110777551 110777734 -73510928 + MIR SINE MIR 34 229 -33 1421 112 0 0 chr4 110777761 110777949 -73510713 + AluSg/x SINE Alu 112 299 -13 249 207 86 0 chr4 110778248 110778306 -73510356 - MER116 DNA Mariner -17 63 1 398 309 133 62 chr4 110778437 110778587 -73510075 + L2 LINE L2 2912 3050 -222 258 32 0 0 chr4 110778587 110778618 -73510044 + (CA)n Simple_repeat Simple_repeat 2 32 0 398 309 133 62 chr4 110778618 110778804 -73509858 + L2 LINE L2 3050 3272 0 275 224 0 60 chr4 110778883 110778950 -73509712 + L2 LINE L2 3209 3271 -1 289 259 107 0 chr4 110779826 110779938 -73508724 + MIR SINE MIR 136 259 -3 2147 228 89 44 chr4 110780330 110780823 -73507839 - MLT1E3 LTR MaLR 0 624 155 1996 120 15 0 chr4 110780823 110781097 -73507565 + AluSx SINE Alu 3 280 -32 239 48 0 48 chr4 110781097 110781139 -73507523 + (TTAA)n Simple_repeat Simple_repeat 1 40 0 2147 228 89 44 chr4 110781139 110781241 -73507421 - MLT1E3 LTR MaLR -468 156 1 4472 253 69 44 chr4 110783858 110785480 -73503182 + L1MCc LINE L1 17 1669 -4887 * 11228 170 4 115 chr4 110785464 110787834 -73500828 + L1P4 LINE L1 2568 4783 -1382 2085 117 76 15 chr4 110787834 110788175 -73500487 + THE1C LTR MaLR 14 375 0 11228 170 4 115 chr4 110788175 110789008 -73499654 + L1P4 LINE L1 4783 5706 -459 444 67 0 0 chr4 110789020 110789080 -73499582 + (TA)n Simple_repeat Simple_repeat 2 61 0 2092 117 7 0 chr4 110789480 110789761 -73498901 - AluSx SINE Alu -29 283 1 338 324 14 0 chr4 110789828 110789970 -73498692 + MER103 DNA DNA 12 155 -11 751 234 57 75 chr4 110790026 110790073 -73498589 - MER58A DNA MER1_type -2197 223 177 1925 108 90 14 chr4 110790073 110790361 -73498301 + AluSp SINE Alu 1 310 -3 751 234 57 75 chr4 110790361 110790540 -73498122 - MER58A DNA MER1_type -2243 177 1 976 206 27 0 chr4 110790826 110791010 -73497652 - MER5A DNA MER1_type 0 189 1 458 268 24 16 chr4 110791426 110791553 -73497109 - MIR SINE MIR -70 192 65 1428 201 7 46 chr4 110791910 110792213 -73496449 - AluJo SINE Alu -21 291 1 300 226 88 20 chr4 110792384 110792486 -73496176 + MIR SINE MIR 93 201 -61 418 205 236 0 chr4 110792515 110792642 -73496020 + MER5A DNA MER1_type 33 189 0 261 227 40 27 chr4 110792651 110792726 -73495936 + L2 LINE L2 3198 3273 -40 445 90 0 26 chr4 110792827 110792905 -73495757 + (TA)n Simple_repeat Simple_repeat 2 77 0 2986 126 54 0 chr4 110792905 110793333 -73495329 + L1PA15 LINE L1 5697 6147 -18 236 111 0 0 chr4 110793363 110793399 -73495263 - L1PA6 LINE L1 -5 6149 6114 273 301 12 69 chr4 110793557 110793730 -73494932 + L2 LINE L2 3151 3313 0 659 258 68 58 chr4 110793749 110794176 -73494486 + L1MCc LINE L1 1677 2107 -4834 233 31 125 0 chr4 110794212 110794244 -73494418 - MLT2A1 LTR ERVL 0 444 409 180 0 0 0 chr4 110794245 110794265 -73494397 + (TA)n Simple_repeat Simple_repeat 2 21 0 468 235 0 0 chr4 110794284 110794399 -73494263 + (TA)n Simple_repeat Simple_repeat 2 116 0 2844 78 39 5 chr4 110794412 110794799 -73493863 - MLT2A1 LTR ERVL -44 400 1 29090 71 12 4 chr4 110794800 110798438 -73490224 - HERVL-A1 LTR ERVL -1 5653 1984 2094 52 4 0 chr4 110798437 110798688 -73489974 + HERVL LTR ERVL 239 490 -5164 * 1862 272 30 10 chr4 110798688 110798847 -73489815 - L1M4 LINE L1 -1823 4323 4169 524 78 0 111 chr4 110798847 110798937 -73489725 + MADE1 DNA Mariner 1 80 0 1862 272 30 10 chr4 110798937 110799388 -73489274 - L1M4 LINE L1 -1977 4169 3701 230 218 0 0 chr4 110799449 110799504 -73489158 - L1M4 LINE L1 -2452 3694 3640 * 3005 180 4 5 chr4 110799503 110800285 -73488377 + L1P5 LINE L1 4751 5532 -622 624 260 99 10 chr4 110801012 110801250 -73487412 + MIR SINE MIR 4 262 0 450 319 127 55 chr4 110801630 110801678 -73486984 - L2 LINE L2 -560 2754 2711 2085 139 3 0 chr4 110801678 110801981 -73486681 - AluSx SINE Alu -8 304 1 450 319 127 55 chr4 110801981 110802329 -73486333 - L2 LINE L2 -603 2711 2307 1999 148 0 17 chr4 110802329 110802654 -73486008 + AluSx SINE Alu 1 320 0 450 319 127 55 chr4 110802654 110802782 -73485880 - L2 LINE L2 -1007 2307 2190 * 477 251 158 14 chr4 110802780 110803107 -73485555 - L2 LINE L2 0 3313 2705 1449 180 71 44 chr4 110803162 110803529 -73485133 - L1MB8 LINE L1 0 6178 5802 2327 82 7 0 chr4 110803530 110803824 -73484838 - AluSp SINE Alu -16 297 2 2562 33 7 7 chr4 110803828 110804134 -73484528 - AluY SINE Alu -4 307 2 1154 235 4 20 chr4 110804136 110804391 -73484271 - AluJo SINE Alu -18 294 44 1372 131 27 18 chr4 110804444 110804665 -73483997 - L1MB8 LINE L1 -392 5786 5564 847 100 8 17 chr4 110804966 110805086 -73483576 - AluSx SINE Alu -15 295 177 834 132 66 0 chr4 110805085 110805206 -73483456 - AluSx SINE Alu -183 129 1 * 445 127 73 64 chr4 110805277 110805387 -73483275 - LTR30 LTR ERV1 -98 624 514 388 317 81 23 chr4 110805716 110805937 -73482725 - MIR SINE MIR 0 262 29 3552 108 22 69 chr4 110806026 110806617 -73482045 + L1PA13 LINE L1 5599 6161 -2 1085 258 132 40 chr4 110806897 110807452 -73481210 + HAL1 LINE L1 1585 2190 -317 36 23 0 0 chr4 110807577 110807620 -73481042 + AT_rich Low_complexity Low_complexity 1 43 0 1726 197 0 0 chr4 110807720 110808015 -73480647 + AluJb SINE Alu 1 295 -17 305 284 66 49 chr4 110808107 110808350 -73480312 + L1ME3A LINE L1 4429 4675 -1471 1708 173 16 16 chr4 110808391 110808698 -73479964 + AluJo SINE Alu 1 307 -5 616 261 95 64 chr4 110808725 110808995 -73479667 + L1ME3A LINE L1 4797 5082 -1064 1597 182 25 7 chr4 110808995 110809275 -73479387 - AluJb SINE Alu -17 295 11 616 261 95 64 chr4 110809275 110809361 -73479301 + L1ME3A LINE L1 5082 5164 -982 1655 91 5 5 chr4 110809363 110809583 -73479079 + AluSg SINE Alu 1 220 -90 1945 109 2 154 chr4 110809588 110809984 -73478678 + LTR14B LTR ERVK 9 608 0 659 93 0 0 chr4 110809984 110810070 -73478592 + AluSg SINE Alu 213 298 -14 1729 157 16 39 chr4 110810080 110810219 -73478443 + AluJb SINE Alu 1 142 -170 1887 122 0 75 chr4 110810219 110810540 -73478122 + AluSx SINE Alu 1 297 -15 1729 157 16 39 chr4 110810540 110810712 -73477950 + AluJb SINE Alu 142 305 -7 2588 246 41 47 chr4 110810719 110810874 -73477788 + L1ME3A LINE L1 5172 5326 -844 2369 90 7 0 chr4 110810874 110811174 -73477488 + AluSp SINE Alu 1 302 -11 2588 246 41 47 chr4 110811174 110812023 -73476639 + L1ME3A LINE L1 5326 6170 0 2247 112 0 3 chr4 110812892 110813187 -73475475 + AluSx SINE Alu 1 294 -18 200 287 207 11 chr4 110813406 110813493 -73475169 + L2 LINE L2 3149 3252 -20 2234 122 0 0 chr4 110814118 110814412 -73474250 - AluSx SINE Alu -18 294 1 345 133 0 27 chr4 110814682 110814757 -73473905 - LTR37A LTR ERV1 -3 423 351 506 239 0 60 chr4 110814762 110814896 -73473766 - Tigger3(Golem) DNA MER2_type 0 3038 2913 317 106 80 0 chr4 110814894 110814952 -73473710 - Tigger3(Golem) DNA MER2_type -2956 73 1 * 448 213 144 24 chr4 110814954 110815187 -73473475 - LTR37A LTR ERV1 -93 333 38 2001 131 0 0 chr4 110815263 110815553 -73473109 - AluSx SINE Alu -22 290 1 311 107 36 0 chr4 110817273 110817329 -73471333 + (TATG)n Simple_repeat Simple_repeat 3 60 0 223 305 110 34 chr4 110817767 110817885 -73470777 + MIR SINE MIR 125 251 -11 283 196 36 27 chr4 110817903 110818015 -73470647 + (TATAA)n Simple_repeat Simple_repeat 2 114 0 813 115 39 46 chr4 110818020 110818150 -73470512 + FRAM SINE Alu 38 166 -10 233 237 51 0 chr4 110818170 110818229 -73470433 + MIR SINE MIR 199 260 -2 2461 76 0 0 chr4 110818415 110818717 -73469945 - AluSg SINE Alu -8 302 1 261 337 170 42 chr4 110818811 110818900 -73469762 + L2 LINE L2 2855 2931 -341 2265 71 7 3 chr4 110818900 110819182 -73469480 - AluSq SINE Alu -13 300 18 261 337 170 42 chr4 110819182 110819451 -73469211 + L2 LINE L2 2931 3259 -13 792 144 189 7 chr4 110819554 110819707 -73468955 - MER5A DNA MER1_type -6 183 3 22 35 0 0 chr4 110820261 110820290 -73468372 + AT_rich Low_complexity Low_complexity 1 29 0 472 140 19 65 chr4 110820496 110820603 -73468059 + MER53 DNA DNA 3 104 -85 260 118 0 0 chr4 110820662 110820696 -73467966 + U2 snRNA snRNA 1 34 -154 579 208 45 13 chr4 110820790 110820944 -73467718 - Charlie1b DNA MER1_type 0 523 365 * 874 221 84 58 chr4 110820934 110821160 -73467502 - Charlie1b DNA MER1_type -289 234 3 300 293 27 5 chr4 110821244 110821350 -73467312 + CT-rich Low_complexity Low_complexity 5 188 0 21 57 0 0 chr4 110821488 110821523 -73467139 + AT_rich Low_complexity Low_complexity 1 35 0 475 179 22 128 chr4 110821785 110821877 -73466785 + L1MA4 LINE L1 6018 6083 -217 2264 96 0 7 chr4 110821877 110822179 -73466483 - AluSx SINE Alu -12 300 1 475 179 22 128 chr4 110822179 110822265 -73466397 + L1MA4 LINE L1 6083 6177 -123 813 189 0 14 chr4 110822266 110822409 -73466253 + FLAM_C SINE Alu 2 142 -1 807 284 44 0 chr4 110822421 110822646 -73466016 - MIR SINE MIR -15 247 13 1618 98 30 4 chr4 110822665 110822899 -73465763 - AluSx SINE Alu -15 297 58 2043 133 7 0 chr4 110823035 110823328 -73465334 - AluSq SINE Alu -18 295 1 2255 120 0 0 chr4 110823527 110823826 -73464836 - AluSx SINE Alu -12 300 2 21 57 0 0 chr4 110823835 110823870 -73464792 + AT_rich Low_complexity Low_complexity 1 35 0 1866 168 7 0 chr4 110823871 110824175 -73464487 - AluJb SINE Alu -6 306 1 2445 74 0 10 chr4 110824546 110824845 -73463817 - AluSp SINE Alu -15 298 3 198 323 81 30 chr4 110825062 110825161 -73463501 + L2 LINE L2 3157 3260 -12 1514 195 0 46 chr4 110825172 110825332 -73463330 - AluJo SINE Alu -19 293 152 1644 187 3 16 chr4 110825332 110825637 -73463025 - AluJo SINE Alu -11 301 1 1514 195 0 46 chr4 110825637 110825783 -73462879 - AluJo SINE Alu -160 152 1 21 0 0 0 chr4 110825815 110825836 -73462826 + AT_rich Low_complexity Low_complexity 1 21 0 203 261 0 0 chr4 110825904 110825950 -73462712 - L2 LINE L2 0 3313 3268 25 31 0 0 chr4 110826229 110826261 -73462401 + AT_rich Low_complexity Low_complexity 1 32 0 180 176 0 0 chr4 110829074 110829108 -73459554 + (TATG)n Simple_repeat Simple_repeat 4 37 0 483 139 426 0 chr4 110829113 110829228 -73459434 - AluSg/x SINE Alu -16 293 130 384 235 104 9 chr4 110829249 110829364 -73459298 - L1MC4a LINE L1 -1174 6634 6509 2277 85 14 7 chr4 110829364 110829659 -73459003 - AluSq SINE Alu -16 297 1 1774 132 28 17 chr4 110829796 110830083 -73458579 + AluSq SINE Alu 17 306 -7 2013 132 17 0 chr4 110830186 110830474 -73458188 + AluSx SINE Alu 1 293 -19 2558 203 76 18 chr4 110830526 110830870 -73457792 + MER82 DNA MER2_type 2 398 -255 2145 106 14 7 chr4 110830870 110831162 -73457500 - AluSx SINE Alu -18 294 1 2558 203 76 18 chr4 110831162 110831424 -73457238 + MER82 DNA MER2_type 398 643 -10 21 0 0 0 chr4 110831741 110831762 -73456900 + AT_rich Low_complexity Low_complexity 1 21 0 348 315 207 14 chr4 110831969 110832331 -73456331 + L2 LINE L2 2874 3305 -8 2151 134 7 0 chr4 110832399 110832697 -73455965 - AluSx SINE Alu -12 300 1 24 53 0 0 chr4 110832905 110832943 -73455719 + AT_rich Low_complexity Low_complexity 1 38 0 532 213 53 20 chr4 110833268 110833418 -73455244 - MER119 DNA MER1_type -7 576 422 2359 103 0 0 chr4 110833443 110833743 -73454919 + AluSq SINE Alu 1 300 -13 1522 233 38 0 chr4 110833751 110834090 -73454572 - MER119 DNA MER1_type -231 352 1 2379 98 0 0 chr4 110834281 110834588 -73454074 - AluSx SINE Alu -5 307 1 460 291 54 38 chr4 110834789 110835105 -73453557 - L1ME4a LINE L1 -213 5908 5588 2194 129 0 0 chr4 110835110 110835420 -73453242 - AluSx SINE Alu -2 310 1 24 77 0 0 chr4 110835423 110835475 -73453187 + AT_rich Low_complexity Low_complexity 1 52 0 1806 161 18 0 chr4 110835564 110835850 -73452812 - AluJb SINE Alu -21 291 1 2173 93 30 7 chr4 110835885 110836185 -73452477 - AluSx SINE Alu -5 307 1 2410 78 0 0 chr4 110836358 110836651 -73452011 + AluY SINE Alu 3 295 -16 2234 112 0 3 chr4 110837069 110837372 -73451290 - AluSp SINE Alu -11 302 1 541 186 31 0 chr4 110837496 110837593 -73451069 + FLAM_A SINE Alu 1 100 -42 1632 178 13 26 chr4 110837751 110838054 -73450608 - AluJo SINE Alu -13 299 1 1643 174 7 42 chr4 110838275 110838585 -73450077 + AluJo SINE Alu 1 299 -13 2288 95 16 0 chr4 110839021 110839327 -73449335 - AluSp SINE Alu 0 313 3 291 54 0 0 chr4 110840697 110840734 -73447928 + (A)n Simple_repeat Simple_repeat 1 37 0 180 0 0 0 chr4 110840734 110840754 -73447908 + (TA)n Simple_repeat Simple_repeat 2 21 0 1008 9 0 0 chr4 110840758 110840871 -73447791 - AluYb8 SINE Alu 0 318 206 945 265 48 15 chr4 110841373 110841811 -73446851 + MLT1J LTR MaLR 7 497 -14 2347 70 3 19 chr4 110841851 110842167 -73446495 + AluY SINE Alu 1 311 0 654 195 68 37 chr4 110842598 110842788 -73445874 + L1ME2 LINE L1 5922 6117 -47 299 198 12 47 chr4 110843430 110843516 -73445146 + L1MC4a LINE L1 5834 5916 -1892 737 194 0 0 chr4 110843535 110843659 -73445003 + AluJo/FLAM SINE Alu 1 124 -188 413 221 0 0 chr4 110843658 110843735 -73444927 + AluJ/FRAM SINE Alu 217 293 -19 * 1252 157 73 83 chr4 110843750 110844050 -73444612 + AluJo SINE Alu 16 312 0 337 225 68 105 chr4 110844150 110844341 -73444321 + L1MC4a LINE L1 6042 6225 -1583 589 189 174 0 chr4 110844377 110844509 -73444153 + FRAM SINE Alu 2 156 -20 1095 147 0 23 chr4 110844626 110844803 -73443859 - AluJb SINE Alu -6 306 134 2291 124 0 3 chr4 110844803 110845109 -73443553 - AluSx SINE Alu -7 305 1 1017 98 0 0 chr4 110847002 110847135 -73441527 + AluSq/x SINE Alu 1 133 -179 236 299 90 22 chr4 110847278 110847412 -73441250 + MIR3 SINE MIR 4 146 -62 2207 108 3 10 chr4 110848827 110849156 -73439506 + AluSx SINE Alu 3 329 0 822 185 58 12 chr4 110849496 110849669 -73438993 + MER20 DNA MER1_type 38 218 -1 343 328 94 31 chr4 110849942 110850134 -73438528 + HAL1b LINE L1 518 721 -627 468 186 114 12 chr4 110850605 110850772 -73437890 + L1ME4a LINE L1 5932 6115 -6 260 254 32 16 chr4 110850873 110850936 -73437726 - L2 LINE L2 -1 3312 3249 23 0 0 0 chr4 110851381 110851404 -73437258 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr4 110853237 110853265 -73435397 + AT_rich Low_complexity Low_complexity 1 28 0 37 69 0 0 chr4 110853314 110853386 -73435276 + AT_rich Low_complexity Low_complexity 1 72 0 2261 99 13 0 chr4 110853434 110853738 -73434924 - AluSx SINE Alu -4 308 1 1733 112 0 4 chr4 110853971 110854203 -73434459 + AluSq SINE Alu 2 232 -81 311 241 38 76 chr4 110854224 110854515 -73434147 + L1ME4a LINE L1 5772 6051 -70 739 168 15 8 chr4 110854518 110854649 -73434013 - FLAM_A SINE Alu -1 132 1 265 105 0 53 chr4 110854657 110854714 -73433948 + (TTTC)n Simple_repeat Simple_repeat 3 56 0 184 125 0 62 chr4 110854833 110854881 -73433781 + (TTCC)n Simple_repeat Simple_repeat 3 47 0 919 188 0 75 chr4 110854885 110855098 -73433564 - AluJo SINE Alu 0 312 116 343 286 134 18 chr4 110855662 110855833 -73432829 + L1MC4a LINE L1 5871 6061 -1747 24 50 0 33 chr4 110855926 110855941 -73432721 + AT_rich Low_complexity Low_complexity 1 15 -43 593 202 0 16 chr4 110855941 110856070 -73432592 - AluJo SINE Alu -175 127 1 24 50 0 33 chr4 110856070 110856114 -73432548 + AT_rich Low_complexity Low_complexity 15 58 0 254 208 75 0 chr4 110856822 110856875 -73431787 + MLT1A2 LTR MaLR 173 229 -145 4012 165 41 18 chr4 110856877 110858149 -73430513 + L1MB4 LINE L1 4798 6103 -77 198 0 0 0 chr4 110858154 110858176 -73430486 + (TAA)n Simple_repeat Simple_repeat 1 22 0 1542 169 43 10 chr4 110858178 110858479 -73430183 + L1MB5 LINE L1 5826 6136 -38 1146 143 76 146 chr4 110858558 110859018 -73429644 + MSTC LTR MaLR 1 428 0 27 29 0 0 chr4 110859032 110859066 -73429596 + AT_rich Low_complexity Low_complexity 1 34 0 225 191 0 0 chr4 110859635 110859677 -73428985 - MER103 DNA DNA -73 93 52 184 373 27 18 chr4 110859781 110859891 -73428771 - MIR3 SINE MIR -6 202 92 1778 171 3 7 chr4 110860014 110860301 -73428361 - AluJb SINE Alu -5 307 22 2743 7 0 0 chr4 110860914 110861212 -73427450 + AluYa5 SINE Alu 1 298 -13 218 274 21 0 chr4 110861432 110861527 -73427135 + (CATATA)n Simple_repeat Simple_repeat 3 99 0 2610 154 17 4 chr4 110861629 110862090 -73426572 + L1PB3 LINE L1 5688 6154 0 2384 83 0 0 chr4 110862093 110862381 -73426281 + AluSx SINE Alu 2 289 -23 1664 239 100 70 chr4 110862422 110863668 -73424994 - L1MEc LINE L1 -2494 3721 2426 1790 185 3 3 chr4 110863692 110864000 -73424662 - AluSx SINE Alu -4 308 1 2230 197 44 11 chr4 110864001 110864523 -73424139 + MER74A LTR ERVL 20 558 0 1136 250 86 38 chr4 110864533 110865114 -73423548 - L1MEc LINE L1 -3943 2453 1845 39251 59 8 1 chr4 110865116 110871209 -73417453 - L1PA5 LINE L1 -8 6146 11 22 0 0 0 chr4 110871216 110871238 -73417424 + AT_rich Low_complexity Low_complexity 1 22 0 2690 281 100 22 chr4 110871241 110872893 -73415769 - L1MEc LINE L1 -4578 1818 39 308 305 71 0 chr4 110872972 110873113 -73415549 - MLT1I LTR MaLR -257 152 2 426 261 24 146 chr4 110873237 110873381 -73415281 + MIR SINE MIR 4 95 -167 9170 23 22 1 chr4 110873381 110875213 -73413449 + L1PA3 LINE L1 4303 6152 -3 426 261 24 146 chr4 110875213 110875363 -73413299 + MIR SINE MIR 95 262 0 1674 189 3 0 chr4 110875540 110875851 -73412811 + AluJb SINE Alu 1 312 0 439 288 13 20 chr4 110876170 110876319 -73412343 + MIR SINE MIR 61 207 -55 1957 120 7 10 chr4 110877149 110877440 -73411222 + AluSx SINE Alu 1 290 -22 24 0 0 0 chr4 110877442 110877466 -73411196 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr4 110877499 110877522 -73411140 + AT_rich Low_complexity Low_complexity 1 23 0 728 298 71 32 chr4 110877746 110878156 -73410506 - LTR16A1 LTR ERVL -2 455 30 264 281 66 84 chr4 110878174 110878341 -73410321 + MLT1K LTR MaLR 128 291 -297 23 0 0 0 chr4 110879372 110879395 -73409267 + AT_rich Low_complexity Low_complexity 1 23 0 345 272 68 96 chr4 110879453 110879596 -73409066 + L1ME4a LINE L1 5537 5682 -439 1496 138 61 12 chr4 110879596 110879842 -73408820 + AluJo SINE Alu 36 293 -19 345 272 68 96 chr4 110879842 110879995 -73408667 + L1ME4a LINE L1 5682 5838 -283 5702 129 9 15 chr4 110879995 110880277 -73408385 + L1PA16 LINE L1 4680 4962 -1204 1945 135 105 15 chr4 110880277 110880611 -73408051 - THE1B LTR MaLR 0 364 1 12219 89 2 0 chr4 110880611 110882187 -73406475 - THE1B-int LTR MaLR 0 1580 1 2114 115 115 15 chr4 110882187 110882518 -73406144 - THE1B LTR MaLR 0 364 1 5702 129 9 15 chr4 110882518 110883214 -73405448 + L1PA16 LINE L1 4960 5646 -520 2065 153 39 28 chr4 110883214 110883574 -73405088 + THE1B LTR MaLR 1 364 0 5702 129 9 15 chr4 110883574 110884081 -73404581 + L1PA16 LINE L1 5646 6155 -11 198 0 0 0 chr4 110884084 110884106 -73404556 + (CATATA)n Simple_repeat Simple_repeat 2 23 0 747 156 33 0 chr4 110884107 110884229 -73404433 + FLAM_A SINE Alu 1 126 -7 345 272 68 96 chr4 110884229 110884283 -73404379 + L1ME4a LINE L1 5840 5894 -227 2786 7 0 7 chr4 110884283 110884586 -73404076 + AluYa5 SINE Alu 1 301 -10 345 272 68 96 chr4 110884586 110884768 -73403894 + L1ME4a LINE L1 5894 6062 -59 408 323 127 6 chr4 110885041 110885403 -73403259 + L2 LINE L2 1698 2103 -1211 2282 112 0 19 chr4 110886559 110886871 -73401791 - AluSx SINE Alu -6 306 1 1398 201 0 8 chr4 110886873 110887137 -73401525 - AluJo SINE Alu -13 299 38 12067 73 13 6 chr4 110887205 110887880 -73400782 - L1PA7 LINE L1 0 6154 5485 1980 103 85 0 chr4 110887880 110888151 -73400511 - AluSq SINE Alu -19 294 1 12067 73 13 6 chr4 110888151 110889667 -73398995 - L1PA7 LINE L1 -669 5485 3961 2159 107 21 0 chr4 110889667 110889957 -73398705 - AluSp SINE Alu -17 296 1 12067 73 13 6 chr4 110889957 110890171 -73398491 - L1PA7 LINE L1 -2193 3961 3750 32 0 0 0 chr4 110890493 110890525 -73398137 + AT_rich Low_complexity Low_complexity 1 32 0 2295 96 0 7 chr4 110890533 110890834 -73397828 + AluSc SINE Alu 1 299 -10 2126 172 37 0 chr4 110890877 110891285 -73397377 + L1MB4 LINE L1 5753 6175 -5 23 33 0 0 chr4 110891327 110891357 -73397305 + AT_rich Low_complexity Low_complexity 1 30 0 395 244 52 7 chr4 110891404 110891539 -73397123 + MIR SINE MIR 122 262 0 1862 162 16 39 chr4 110891593 110891902 -73396760 - AluJo SINE Alu -10 302 1 189 276 17 17 chr4 110892094 110892152 -73396510 - MIR SINE MIR -124 138 81 236 89 18 125 chr4 110892457 110892569 -73396093 + (CTTAT)n Simple_repeat Simple_repeat 5 104 0 367 174 47 128 chr4 110892908 110893080 -73395582 - L2 LINE L2 -44 3269 3112 22 0 0 0 chr4 110893123 110893145 -73395517 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr4 110893774 110893797 -73394865 + (T)n Simple_repeat Simple_repeat 1 23 0 1032 141 12 6 chr4 110895142 110895312 -73393350 + L1MB2 LINE L1 5962 6132 -39 399 231 62 19 chr4 110895521 110895676 -73392986 - MLT1I LTR MaLR -2 407 295 186 43 0 0 chr4 110895905 110895928 -73392734 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1679 179 21 0 chr4 110895931 110896211 -73392451 - AluJo SINE Alu -26 286 1 1820 147 42 3 chr4 110896706 110896991 -73391671 + AluSx SINE Alu 1 296 -16 1436 199 61 14 chr4 110896994 110897291 -73391371 + AluJo SINE Alu 1 311 -1 2429 77 0 10 chr4 110897936 110898247 -73390415 - AluSq SINE Alu -5 308 1 2084 117 10 0 chr4 110898251 110898542 -73390120 - AluSx SINE Alu -18 294 1 23 0 0 0 chr4 110900729 110900752 -73387910 + GC_rich Low_complexity Low_complexity 1 23 0 361 143 66 55 chr4 110903568 110903659 -73385003 - MIR3 SINE MIR -10 198 107 25 31 0 0 chr4 110905604 110905636 -73383026 + GC_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr4 110906685 110906711 -73381951 + GC_rich Low_complexity Low_complexity 1 26 0 312 326 0 33 chr4 110906902 110907086 -73381576 + CT-rich Low_complexity Low_complexity 2 179 0 197 91 30 0 chr4 110907859 110907892 -73380770 - MIR SINE MIR -59 149 116 1384 81 43 68 chr4 110909960 110910194 -73378468 + L1PA8 LINE L1 5940 6167 -5 300 298 44 0 chr4 110913080 110913194 -73375468 - L2 LINE L2 -1 3271 3153 1621 137 34 41 chr4 110913219 110913512 -73375150 + AluJb SINE Alu 1 291 -21 1985 152 7 0 chr4 110916258 110916567 -73372095 - AluSx SINE Alu -1 311 1 182 294 206 0 chr4 110916597 110916689 -73371973 - L3b LINE CR1 -164 1419 1309 1988 151 0 16 chr4 110917363 110917668 -73370994 - AluJb SINE Alu -12 300 1 537 298 7 0 chr4 110917901 110918052 -73370610 + FRAM SINE Alu 1 151 -25 2199 106 3 7 chr4 110918086 110918378 -73370284 + AluSx SINE Alu 1 291 -21 268 235 34 59 chr4 110919023 110919142 -73369520 - MIR SINE MIR -25 237 122 270 0 0 0 chr4 110919461 110919491 -73369171 + (TA)n Simple_repeat Simple_repeat 2 31 0 180 0 0 0 chr4 110919491 110919511 -73369151 + (T)n Simple_repeat Simple_repeat 1 20 0 201 74 0 0 chr4 110919611 110919638 -73369024 + (CATATA)n Simple_repeat Simple_repeat 6 32 0 5675 109 61 128 chr4 110919638 110920086 -73368576 + Tigger3b DNA MER2_type 3 480 -2548 2579 46 3 3 chr4 110920086 110920389 -73368273 + AluY SINE Alu 1 303 -8 5675 109 61 128 chr4 110920389 110920746 -73367916 + Tigger3b DNA MER2_type 480 691 -2337 2066 110 17 7 chr4 110920746 110921037 -73367625 + AluSx SINE Alu 1 294 -18 5675 109 61 128 chr4 110921037 110921517 -73367145 + Tigger3b DNA MER2_type 691 1202 -29 23 0 0 0 chr4 110921699 110921722 -73366940 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr4 110922010 110922046 -73366616 + AT_rich Low_complexity Low_complexity 1 36 0 2330 105 3 0 chr4 110922172 110922478 -73366184 + AluSx SINE Alu 3 309 -3 402 244 64 35 chr4 110922917 110923105 -73365557 + MLT1H LTR MaLR 49 212 -197 2386 28 3 0 chr4 110924227 110924509 -73364153 - L1PA4 LINE L1 0 6155 5873 1900 25 81 0 chr4 110924509 110924744 -73363918 + L1PA4 LINE L1 5630 5883 -272 24 0 0 0 chr4 110925052 110925076 -73363586 + AT_rich Low_complexity Low_complexity 1 24 0 201 125 50 0 chr4 110926108 110926148 -73362514 + T-rich Low_complexity Low_complexity 2 43 0 564 286 81 10 chr4 110926276 110926573 -73362089 + L1ME4a LINE L1 5516 5833 -288 1852 153 3 14 chr4 110926573 110926855 -73361807 - AluSx SINE Alu -21 291 13 30 0 0 0 chr4 110927007 110927037 -73361625 + AT_rich Low_complexity Low_complexity 1 30 0 2114 136 0 10 chr4 110927339 110927647 -73361015 - AluSx SINE Alu -7 305 1 1442 242 53 8 chr4 110927668 110928048 -73360614 - LTR40c LTR ERVL -68 397 1 447 166 133 34 chr4 110928132 110928278 -73360384 - LTR40a LTR ERVL -24 495 1 2134 116 30 13 chr4 110928530 110928831 -73359831 - AluSx SINE Alu -6 306 1 1672 169 0 4 chr4 110929362 110929657 -73359005 - AluJb SINE Alu 0 309 16 1084 249 32 12 chr4 110929773 110930026 -73358636 - MIR SINE MIR 0 262 5 452 304 110 5 chr4 110931353 110931544 -73357118 - MIR SINE MIR -6 256 46 25 75 0 0 chr4 110931919 110931972 -73356690 + AT_rich Low_complexity Low_complexity 1 53 0 2271 86 26 0 chr4 110932077 110932380 -73356282 - AluSp SINE Alu -2 311 1 495 303 15 36 chr4 110932884 110933079 -73355583 + Tigger8 DNA MER2_type 96 286 -380 254 263 11 21 chr4 110933472 110933567 -73355095 + (CATATA)n Simple_repeat Simple_repeat 5 98 0 907 201 75 107 chr4 110933851 110934224 -73354438 - MLT1A1 LTR MaLR -4 361 1 21 0 0 0 chr4 110935602 110935623 -73353039 + AT_rich Low_complexity Low_complexity 1 21 0 7518 26 9 0 chr4 110935683 110936700 -73351962 + L1PA3 LINE L1 5157 6181 0 661 216 0 16 chr4 110937661 110937786 -73350876 + FLAM_A SINE Alu 1 123 -10 1662 184 16 7 chr4 110937814 110938123 -73350539 + AluJb SINE Alu 1 312 0 424 329 33 25 chr4 110938229 110938597 -73350065 + HAL1 LINE L1 1125 1495 -1012 2163 118 3 3 chr4 110938599 110938905 -73349757 + AluSq SINE Alu 1 306 -7 2292 94 0 7 chr4 110938905 110939201 -73349461 + AluSc SINE Alu 1 295 -14 206 305 0 17 chr4 110939615 110939674 -73348988 - MER5C DNA MER1_type -265 59 2 26 64 0 0 chr4 110939790 110939837 -73348825 + AT_rich Low_complexity Low_complexity 1 47 0 312 270 92 82 chr4 110939963 110940428 -73348234 + L1ME3A LINE L1 2221 2680 -3466 240 143 0 0 chr4 110940428 110940463 -73348199 + U2 snRNA snRNA 1 35 -153 312 270 92 82 chr4 110940463 110940477 -73348185 + L1ME3A LINE L1 2680 2692 -3454 1963 128 14 0 chr4 110940477 110940758 -73347904 + AluSx SINE Alu 1 285 -27 312 270 92 82 chr4 110940758 110940992 -73347670 + L1ME3A LINE L1 2692 2922 -3224 2020 128 7 3 chr4 110940992 110941288 -73347374 + AluSx SINE Alu 1 297 -15 312 270 92 82 chr4 110941288 110941584 -73347078 + L1ME3A LINE L1 2922 3276 -2870 927 271 51 60 chr4 110941597 110941724 -73346938 + L1ME3A LINE L1 4415 4542 -1604 891 130 0 8 chr4 110941724 110941855 -73346807 - FLAM_C SINE Alu -3 130 1 927 271 51 60 chr4 110941855 110942331 -73346331 + L1ME3A LINE L1 4542 5013 -1133 5823 131 31 8 chr4 110942334 110943338 -73345324 + L1PB1 LINE L1 4753 5798 -353 306 0 0 0 chr4 110943338 110943372 -73345290 + (CA)n Simple_repeat Simple_repeat 2 35 0 5823 131 31 8 chr4 110943372 110943728 -73344934 + L1PB1 LINE L1 5798 6144 -7 569 260 162 43 chr4 110943713 110944571 -73344091 + L1ME3A LINE L1 4980 5938 -232 * 2095 130 19 7 chr4 110944920 110945228 -73343434 + AluSx SINE Alu 1 312 0 43080 46 2 1 chr4 110945461 110951639 -73337023 + L1PA4 LINE L1 1 6183 0 43 76 0 0 chr4 110951677 110951769 -73336893 + AT_rich Low_complexity Low_complexity 1 92 0 22 0 0 0 chr4 110952211 110952233 -73336429 + AT_rich Low_complexity Low_complexity 1 22 0 4043 102 58 30 chr4 110952233 110952623 -73336039 - L1MA4 LINE L1 -3 6297 5878 1739 145 10 30 chr4 110952623 110952927 -73335735 - AluJb SINE Alu -14 298 1 4043 102 58 30 chr4 110952927 110953232 -73335430 - L1MA4 LINE L1 -422 5878 5583 326 263 8 68 chr4 110953233 110953366 -73335296 + MIR SINE MIR 124 248 -14 1703 169 7 4 chr4 110953693 110953971 -73334691 + AluJo SINE Alu 1 279 -33 187 206 0 0 chr4 110953997 110954031 -73334631 - MIR SINE MIR -113 149 116 236 245 26 66 chr4 110954720 110954871 -73333791 - L1ME4a LINE L1 -182 5939 5795 906 184 13 0 chr4 110955293 110955445 -73333217 + FRAM SINE Alu 1 154 -22 24 0 0 0 chr4 110955448 110955472 -73333190 + AT_rich Low_complexity Low_complexity 1 24 0 1759 184 3 10 chr4 110956125 110956424 -73332238 + AluJb SINE Alu 1 297 -15 23 0 0 0 chr4 110956832 110956855 -73331807 + AT_rich Low_complexity Low_complexity 1 23 0 194 357 0 12 chr4 110957195 110957279 -73331383 - MIR SINE MIR -6 256 174 254 254 218 14 chr4 110958376 110958518 -73330144 - MIR SINE MIR -51 211 41 2189 104 7 3 chr4 110960813 110961112 -73327550 + AluSx SINE Alu 1 300 -12 293 297 99 9 chr4 110961156 110961267 -73327395 - L2 LINE L2 -16 3256 3136 584 256 141 26 chr4 110961308 110961499 -73327163 - MIR SINE MIR -11 251 39 1479 228 79 31 chr4 110961557 110962191 -73326471 + L2 LINE L2 2645 3311 -2 581 276 36 53 chr4 110962216 110962263 -73326399 + L2 LINE L2 1783 1829 -1485 2180 125 0 0 chr4 110962263 110962567 -73326095 - AluSx SINE Alu -8 304 1 581 276 36 53 chr4 110962567 110962744 -73325918 + L2 LINE L2 1829 2003 -1311 1270 291 140 39 chr4 110962750 110962948 -73325714 + L2 LINE L2 2147 2324 -989 1487 219 39 36 chr4 110962948 110963337 -73325325 + MLT1B LTR MaLR 1 390 0 1270 291 140 39 chr4 110963337 110963954 -73324708 + L2 LINE L2 2324 3106 -207 1393 163 89 15 chr4 110963954 110964224 -73324438 - AluJb SINE Alu -22 290 1 1270 291 140 39 chr4 110964224 110964447 -73324215 + L2 LINE L2 3106 3305 -8 2321 107 0 0 chr4 110964622 110964922 -73323740 - AluSx SINE Alu -12 300 1 1109 60 0 8 chr4 110965128 110965261 -73323401 + AluSq/x SINE Alu 1 132 -180 1146 182 26 65 chr4 110965272 110965580 -73323082 + HsTC2 DNA Tc2 25 320 -1578 632 174 52 0 chr4 110965611 110965726 -73322936 + FLAM_C SINE Alu 7 127 -16 201 121 0 0 chr4 110965734 110965767 -73322895 + (TG)n Simple_repeat Simple_repeat 2 34 0 518 160 132 0 chr4 110965851 110965957 -73322705 + L1MB2 LINE L1 6044 6163 -8 323 220 68 17 chr4 110965977 110966095 -73322567 + HsTC2 DNA Tc2 1775 1898 0 332 335 26 33 chr4 110966405 110966557 -73322105 + HAL1 LINE L1 164 314 -2193 233 295 82 33 chr4 110966579 110966762 -73321900 + HAL1 LINE L1 1232 1423 -1084 1766 150 4 0 chr4 110966763 110967037 -73321625 - AluSx SINE Alu -12 300 26 2128 143 0 0 chr4 110967102 110967402 -73321260 + AluSx SINE Alu 2 301 -11 1550 180 22 7 chr4 110967414 110967726 -73320936 + AluJo SINE Alu 1 316 0 1850 127 11 18 chr4 110967769 110968053 -73320609 + AluSx SINE Alu 5 286 -26 741 181 12 35 chr4 111020087 111020258 -73268404 - THE1C LTR MaLR -206 169 3 1360 141 33 45 chr4 111020349 111020591 -73268071 - AluJb SINE Alu -23 289 51 713 197 0 0 chr4 111020606 111020738 -73267924 - FLAM_C SINE Alu 0 133 2 25 0 0 0 chr4 111020872 111020897 -73267765 + AT_rich Low_complexity Low_complexity 1 25 0 316 220 0 0 chr4 111020994 111021053 -73267609 + L1ME3A LINE L1 6063 6121 -49 280 142 100 50 chr4 111021101 111021167 -73267495 + L1MC5 LINE L1 7612 7673 -288 2359 93 0 0 chr4 111021167 111021467 -73267195 - AluSg SINE Alu -10 300 1 280 142 100 50 chr4 111021467 111021520 -73267142 + L1MC5 LINE L1 7673 7737 -224 409 174 0 0 chr4 111021729 111021798 -73266864 + FLAM_A SINE Alu 39 107 -35 670 108 0 29 chr4 111022276 111022398 -73266264 - FLAM_A SINE Alu 0 142 25 1498 77 0 0 chr4 111022959 111023142 -73265520 - AluY SINE Alu -11 300 118 231 300 267 0 chr4 111023279 111023429 -73265233 - L1MC4 LINE L1 -46 7996 7807 929 115 23 0 chr4 111023485 111023615 -73265047 - AluSq/x SINE Alu -180 133 1 198 0 0 0 chr4 111023860 111023882 -73264780 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 2131 107 4 0 chr4 111023884 111024164 -73264498 - AluSx SINE Alu -31 281 1 2393 60 3 28 chr4 111024231 111024550 -73264112 - AluY SINE Alu 0 311 1 1317 147 0 5 chr4 111024736 111024953 -73263709 + AluSg/x SINE Alu 87 302 0 1653 271 137 34 chr4 111025317 111026001 -73262661 - L3 LINE CR1 -199 1378 624 410 363 114 9 chr4 111026038 111026363 -73262299 - L3 LINE CR1 -1120 457 99 2117 128 7 0 chr4 111026824 111027114 -73261548 + AluSp SINE Alu 1 292 -21 195 218 0 0 chr4 111027114 111027169 -73261493 + (TA)n Simple_repeat Simple_repeat 1 55 0 749 178 0 0 chr4 111027213 111027331 -73261331 - FLAM_C SINE Alu -25 118 1 216 97 0 0 chr4 111027334 111027365 -73261297 + (T)n Simple_repeat Simple_repeat 1 31 0 2026 137 30 0 chr4 111029740 111030040 -73258622 + AluSx SINE Alu 1 309 -3 325 144 0 133 chr4 111030429 111030519 -73258143 - L1MA4A LINE L1 -23 6280 6203 23 0 0 0 chr4 111031101 111031124 -73257538 + AT_rich Low_complexity Low_complexity 1 23 0 2474 84 3 0 chr4 111031397 111031707 -73256955 + AluSp SINE Alu 2 312 -1 2480 73 0 10 chr4 111031946 111032260 -73256402 + AluY SINE Alu 1 311 0 913 255 77 14 chr4 111032417 111032703 -73255959 - L3 LINE CR1 -17 1560 1257 2169 122 6 3 chr4 111032950 111033261 -73255401 + AluSx SINE Alu 1 312 0 771 131 39 137 chr4 111033683 111033895 -73254767 - L1P4 LINE L1 -569 5597 5409 25 0 0 0 chr4 111034811 111034836 -73253826 + AT_rich Low_complexity Low_complexity 1 25 0 2192 106 7 3 chr4 111035452 111035753 -73252909 - AluSg SINE Alu -8 302 1 2357 65 7 0 chr4 111036173 111036493 -73252169 - AluY SINE Alu 0 322 1 303 234 0 0 chr4 111036517 111036581 -73252081 + L1ME LINE L1 5775 5838 -332 333 243 126 0 chr4 111036620 111036731 -73251931 - L1MC/D LINE L1 -2051 5757 5633 1139 185 231 4 chr4 111036750 111036895 -73251767 - AluJb SINE Alu -10 292 181 2375 48 48 0 chr4 111036895 111037187 -73251475 - AluY SINE Alu -5 306 1 1139 185 231 4 chr4 111037187 111037279 -73251383 - AluJb SINE Alu -121 181 1 22 0 0 0 chr4 111037585 111037607 -73251055 + AT_rich Low_complexity Low_complexity 1 22 0 874 171 11 34 chr4 111037890 111037908 -73250754 - AluJo/FRAM SINE Alu 0 312 295 2238 111 7 0 chr4 111037908 111038214 -73250448 - AluSg SINE Alu -2 308 1 874 171 11 34 chr4 111038214 111038371 -73250291 - AluJo/FRAM SINE Alu -17 295 141 1937 156 0 3 chr4 111038384 111038686 -73249976 - AluSx SINE Alu -11 301 1 180 77 0 0 chr4 111038780 111038806 -73249856 + (A)n Simple_repeat Simple_repeat 1 26 0 2146 116 20 0 chr4 111038938 111039232 -73249430 - AluSg SINE Alu -8 302 3 2206 123 0 0 chr4 111039291 111039593 -73249069 - AluSx SINE Alu -10 302 1 230 167 0 0 chr4 111039737 111039773 -73248889 + U2 snRNA snRNA 1 36 -152 224 109 0 22 chr4 111040776 111040792 -73247870 + (CTAA)n Simple_repeat Simple_repeat 2 17 -29 2289 79 0 3 chr4 111040792 111041082 -73247580 + AluY SINE Alu 2 290 -21 224 109 0 22 chr4 111041082 111041111 -73247551 + (CTAA)n Simple_repeat Simple_repeat 17 46 0 2079 117 0 0 chr4 111041791 111042062 -73246600 + AluSx SINE Alu 9 282 -30 270 0 0 0 chr4 111042062 111042092 -73246570 + (CA)n Simple_repeat Simple_repeat 1 30 0 778 217 50 22 chr4 111042410 111042590 -73246072 - MER5A DNA MER1_type -2 187 3 2687 179 59 18 chr4 111042692 111043201 -73245461 - MER34 LTR ERV1 0 542 13 2242 77 3 11 chr4 111043777 111044085 -73244577 - AluY SINE Alu 0 307 2 2551 63 0 0 chr4 111044164 111044463 -73244199 - AluSx SINE Alu -13 299 1 2356 105 0 0 chr4 111044509 111044815 -73243847 - AluSq SINE Alu -7 306 1 1262 132 0 0 chr4 111044843 111045017 -73243645 - AluSq SINE Alu -139 174 1 2412 70 0 3 chr4 111045782 111046082 -73242580 + AluY SINE Alu 1 299 -12 1816 122 137 0 chr4 111046487 111046750 -73241912 + AluSx SINE Alu 2 300 -2 303 150 83 0 chr4 111046937 111046997 -73241665 + AluJ/FRAM SINE Alu 231 295 -7 2233 84 7 0 chr4 111047037 111047334 -73241328 + AluSg SINE Alu 2 300 -10 2073 110 0 0 chr4 111047879 111048161 -73240501 + AluSq SINE Alu 1 282 -31 207 0 0 0 chr4 111048164 111048187 -73240475 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1008 129 0 0 chr4 111050542 111050689 -73237973 - AluSg/x SINE Alu -1 311 165 2488 91 8 57 chr4 111051100 111051246 -73237416 + L1MA3 LINE L1 5941 6093 -212 2362 93 3 0 chr4 111051246 111051547 -73237115 + AluSp SINE Alu 1 302 -11 2488 91 8 57 chr4 111051547 111051784 -73236878 + L1MA3 LINE L1 6093 6305 0 678 288 72 31 chr4 111052062 111052429 -73236233 + L1MC/D LINE L1 5266 5646 -532 2199 110 0 10 chr4 111052429 111052729 -73235933 + AluSx SINE Alu 1 297 -15 678 288 72 31 chr4 111052729 111052807 -73235855 + L1MC/D LINE L1 5646 5719 -459 402 93 0 0 chr4 111052902 111052956 -73235706 - MADE1 DNA Mariner 0 80 27 1582 103 117 33 chr4 111052959 111053232 -73235430 + AluSg SINE Alu 3 298 -12 2215 90 48 7 chr4 111053234 111053524 -73235138 + AluSq SINE Alu 1 302 -11 296 200 13 0 chr4 111053530 111053605 -73235057 + GA-rich Low_complexity Low_complexity 3 78 0 1797 79 18 4 chr4 111054122 111054351 -73234311 + AluSg/x SINE Alu 65 296 -14 243 0 0 0 chr4 111054653 111054680 -73233982 + (CA)n Simple_repeat Simple_repeat 2 28 0 1374 111 0 0 chr4 111054790 111054970 -73233692 - AluSq SINE Alu -122 191 12 2474 65 3 0 chr4 111055421 111055714 -73232948 - AluY SINE Alu -17 294 1 243 0 0 0 chr4 111055727 111055754 -73232908 + (TAA)n Simple_repeat Simple_repeat 1 27 0 753 111 0 0 chr4 111055754 111055853 -73232809 + HY3 scRNA scRNA 1 99 -2 1498 161 122 70 chr4 111055900 111056328 -73232334 + LTR7 LTR ERV1 1 450 0 277 211 87 19 chr4 111056422 111056526 -73232136 + L1MC5 LINE L1 7365 7475 -486 356 236 146 0 chr4 111057013 111057136 -73231526 - Charlie8 DNA MER1_type -2213 204 64 401 261 0 11 chr4 111057264 111057356 -73231306 - MIR3 SINE MIR -9 199 109 217 243 14 86 chr4 111057417 111057487 -73231175 - L2 LINE L2 -81 3191 3127 288 53 0 0 chr4 111057522 111057560 -73231102 + (TA)n Simple_repeat Simple_repeat 1 38 0 2295 98 0 3 chr4 111057561 111057857 -73230805 - AluSx SINE Alu -17 295 1 2753 95 3 0 chr4 111057858 111058227 -73230435 - MER41A LTR ERV1 -184 370 1 903 159 7 0 chr4 111058227 111058365 -73230297 + Tigger3(Golem) DNA MER2_type 2890 3028 -1 1592 176 50 0 chr4 111058708 111058987 -73229675 + AluJb SINE Alu 1 293 -19 1035 186 198 35 chr4 111059004 111059262 -73229400 + AluJo SINE Alu 2 301 -1 206 322 89 0 chr4 111060259 111060349 -73228313 - MIR SINE MIR -162 100 3 2051 134 3 0 chr4 111060646 111060936 -73227726 + AluSx SINE Alu 1 291 -21 1311 100 11 0 chr4 111060951 111061141 -73227521 + MER41B LTR ERV1 444 635 0 4283 127 23 33 chr4 111061267 111061336 -73227326 + L1MA3 LINE L1 5608 5676 -629 1928 148 7 7 chr4 111061336 111061640 -73227022 - AluJb SINE Alu -8 304 1 4283 127 23 33 chr4 111061640 111062273 -73226389 + L1MA3 LINE L1 5676 6303 -2 2390 78 17 0 chr4 111062314 111062610 -73226052 + AluSg SINE Alu 1 301 -9 266 227 147 13 chr4 111062696 111062771 -73225891 + L2 LINE L2 3182 3266 -6 1312 184 4 27 chr4 111063211 111063467 -73225195 - AluJo SINE Alu -14 298 49 251 158 0 0 chr4 111063527 111063565 -73225097 - AluJ/FLAM SINE Alu -216 86 49 2535 59 0 7 chr4 111063869 111064174 -73224488 + AluY SINE Alu 1 303 -8 279 274 27 0 chr4 111064179 111064252 -73224410 + L1MC5 LINE L1 7818 7892 -69 21 36 0 0 chr4 111064310 111064338 -73224324 + AT_rich Low_complexity Low_complexity 1 28 0 499 126 36 45 chr4 111064435 111064546 -73224116 - MER53 DNA DNA -1 188 79 * 1402 220 35 74 chr4 111064537 111064996 -73223666 - MLT1D LTR MaLR -64 441 1 207 0 0 0 chr4 111065401 111065424 -73223238 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 22 35 0 0 chr4 111065519 111065548 -73223114 + AT_rich Low_complexity Low_complexity 1 29 0 690 351 167 24 chr4 111065972 111066822 -73221840 + L2 LINE L2 2289 3268 -4 2160 101 10 3 chr4 111067234 111067531 -73221131 + AluSq SINE Alu 1 299 -14 1005 140 51 6 chr4 111067545 111067723 -73220939 - MER105 DNA DNA -5 199 14 183 80 0 0 chr4 111067769 111067794 -73220868 + (CA)n Simple_repeat Simple_repeat 1 25 0 21 36 0 0 chr4 111068337 111068365 -73220297 + AT_rich Low_complexity Low_complexity 1 28 0 2200 122 0 3 chr4 111068371 111068683 -73219979 + AluSx SINE Alu 1 311 -1 3796 146 31 12 chr4 111068697 111069347 -73219315 + L1MB3 LINE L1 5481 6142 -41 2255 82 20 0 chr4 111069603 111069895 -73218767 + AluSp SINE Alu 1 298 -15 554 184 105 0 chr4 111070413 111070527 -73218135 - FLAM_A SINE Alu -7 126 1 2080 126 7 0 chr4 111071409 111071703 -73216959 - AluJb SINE Alu -16 296 1 258 143 20 20 chr4 111072519 111072568 -73216094 + MER3 DNA MER1_type 2 50 -159 228 287 25 41 chr4 111072584 111072706 -73215956 + L1ME1 LINE L1 5979 6098 -68 * 280 295 132 0 chr4 111072626 111072755 -73215907 + L1MA10 LINE L1 6180 6325 -9 234 167 0 0 chr4 111072761 111072821 -73215841 + (TG)n Simple_repeat Simple_repeat 2 61 0 1996 230 80 6 chr4 111073221 111073699 -73214963 - MLT1F LTR MaLR 0 542 30 243 0 0 0 chr4 111073728 111073755 -73214907 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 2233 53 42 7 chr4 111073936 111074219 -73214443 + AluY SINE Alu 1 293 -18 2274 94 3 0 chr4 111074233 111074557 -73214105 + AluSq SINE Alu 1 325 0 367 312 75 53 chr4 111074569 111074675 -73213987 - L2 LINE L2 -925 2389 2287 252 0 0 0 chr4 111074675 111074703 -73213959 + (TAGA)n Simple_repeat Simple_repeat 2 29 0 367 312 75 53 chr4 111074703 111074878 -73213784 - L2 LINE L2 -1027 2287 2102 695 241 80 0 chr4 111075130 111075292 -73213370 + MER45A DNA AcHobo 3 177 -1 830 233 7 0 chr4 111075345 111075495 -73213167 + FRAM SINE Alu 1 151 -15 274 224 47 65 chr4 111076396 111076503 -73212159 + LTR33 LTR ERVL 412 516 -5 1605 168 3 51 chr4 111076811 111077126 -73211536 + AluJo SINE Alu 8 307 -5 1610 172 36 4 chr4 111077223 111077343 -73211319 + AluJo SINE Alu 1 116 -196 288 0 0 0 chr4 111077343 111077375 -73211287 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1610 172 36 4 chr4 111077375 111077533 -73211129 + AluJo SINE Alu 116 288 -24 1604 137 79 7 chr4 111077541 111077819 -73210843 + AluSx SINE Alu 1 298 -14 258 242 48 0 chr4 111077951 111078013 -73210649 - L2 LINE L2 -7 3306 3242 1156 124 0 6 chr4 111078193 111078371 -73210291 - AluSg/x SINE Alu -7 303 127 2508 83 3 0 chr4 111078808 111079120 -73209542 - AluSq SINE Alu 0 313 1 353 143 0 13 chr4 111079611 111079688 -73208974 + (TA)n Simple_repeat Simple_repeat 1 76 0 1469 203 45 21 chr4 111080067 111080397 -73208265 - MER58B DNA MER1_type -3 338 1 2408 75 7 0 chr4 111081000 111081294 -73207368 + AluSg SINE Alu 1 296 -14 2518 68 0 3 chr4 111081296 111081607 -73207055 + AluY SINE Alu 1 310 -1 283 294 104 25 chr4 111081712 111081875 -73206787 + L1MEc LINE L1 190 365 -6031 2185 87 4 0 chr4 111082168 111082479 -73206183 + AluSg SINE Alu 5 316 0 293 258 86 11 chr4 111082530 111082716 -73205946 + L1MEc LINE L1 704 903 -5493 675 155 9 0 chr4 111083006 111083122 -73205540 + Tigger5 DNA MER2_type 1 117 -2206 * 939 148 0 44 chr4 111083110 111083292 -73205370 + Tigger5 DNA MER2_type 2150 2323 0 390 269 151 8 chr4 111083570 111083689 -73204973 + L2 LINE L2 3171 3306 -7 23 54 0 0 chr4 111084321 111084358 -73204304 + AT_rich Low_complexity Low_complexity 1 37 0 2590 68 3 0 chr4 111086338 111086648 -73202014 - AluSp SINE Alu -2 311 1 439 274 62 61 chr4 111086778 111087026 -73201636 - MIR SINE MIR 0 262 15 454 259 23 15 chr4 111087171 111087302 -73201360 + MER94 DNA DNA 2 133 -1 608 299 111 0 chr4 111087324 111087558 -73201104 + MIR SINE MIR 3 262 0 187 219 0 0 chr4 111087685 111087726 -73200936 + L2 LINE L2 3273 3313 0 284 246 123 61 chr4 111088095 111088209 -73200453 + MIR SINE MIR 76 196 -66 297 285 123 8 chr4 111088887 111089017 -73199645 + MIR SINE MIR 118 262 0 1170 194 0 40 chr4 111089017 111089244 -73199418 - AluJb SINE Alu -94 218 1 402 129 14 0 chr4 111089263 111089333 -73199329 + MADE1 DNA Mariner 10 80 0 269 221 59 0 chr4 111089426 111089494 -73199168 - MIR SINE MIR -109 153 82 1962 145 3 7 chr4 111089494 111089798 -73198864 + AluSx SINE Alu 1 303 -9 362 262 75 19 chr4 111089967 111090074 -73198588 - L2 LINE L2 -18 3254 3142 490 318 20 25 chr4 111090534 111090934 -73197728 - L1MC4 LINE L1 -556 7486 7094 2516 46 3 3 chr4 111090951 111091255 -73197407 + AluY SINE Alu 1 304 -7 419 231 83 70 chr4 111091455 111091890 -73196772 + MLT1G1 LTR MaLR 1 593 -2 790 272 15 0 chr4 111091908 111092110 -73196552 - L1MC4 LINE L1 -1065 6977 6773 2271 124 0 0 chr4 111092115 111092422 -73196240 + AluSg SINE Alu 1 307 -3 1921 153 0 0 chr4 111092687 111092993 -73195669 - AluJb SINE Alu 0 306 1 237 188 0 0 chr4 111093252 111093300 -73195362 - MLT1J LTR MaLR -364 147 100 1271 162 0 5 chr4 111093582 111093820 -73194842 - AluJb SINE Alu 0 322 86 205 260 13 65 chr4 111093863 111093940 -73194722 - L2 LINE L2 -675 2639 2567 914 108 0 31 chr4 111094207 111094337 -73194325 - AluSq/x SINE Alu -185 127 2 264 228 0 119 chr4 111094536 111094637 -73194025 + MER21B LTR ERV1 1 89 -774 2424 238 32 46 chr4 111094687 111095410 -73193252 + MER21B LTR ERV1 98 810 -53 30 69 0 0 chr4 111095584 111095642 -73193020 + AT_rich Low_complexity Low_complexity 1 58 0 21 0 0 0 chr4 111095847 111095868 -73192794 + AT_rich Low_complexity Low_complexity 1 21 0 2185 104 3 0 chr4 111095886 111096175 -73192487 + AluSx SINE Alu 1 290 -22 223 159 0 0 chr4 111096521 111096565 -73192097 + L2 LINE L2 3270 3313 0 258 81 0 0 chr4 111096792 111096829 -73191833 + (TA)n Simple_repeat Simple_repeat 2 38 0 183 42 0 0 chr4 111098133 111098157 -73190505 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 390 217 98 11 chr4 111099504 111099596 -73189066 - MIR SINE MIR -92 116 17 754 174 8 23 chr4 111099759 111099891 -73188771 - FLAM_A SINE Alu -12 130 1 1430 222 14 10 chr4 111099897 111100061 -73188601 - AluJo SINE Alu -2 300 133 2529 61 0 10 chr4 111100061 111100372 -73188290 - AluSp SINE Alu -5 308 1 1430 222 14 10 chr4 111100372 111100504 -73188158 - AluJo SINE Alu -169 133 3 1085 161 6 0 chr4 111100657 111100819 -73187843 - FRAM SINE Alu -8 168 6 531 146 39 0 chr4 111100929 111101032 -73187630 - AluJb SINE Alu -15 297 191 1749 177 3 0 chr4 111101597 111101879 -73186783 - AluJb SINE Alu -29 283 1 185 346 87 29 chr4 111101905 111102009 -73186653 - MER5A DNA MER1_type -48 141 32 991 251 97 60 chr4 111102417 111102450 -73186212 + MER34 LTR ERV1 6 36 -506 2283 117 30 38 chr4 111102450 111102817 -73185845 + THE1B LTR MaLR 1 364 0 991 251 97 60 chr4 111102817 111103030 -73185632 + MER34 LTR ERV1 36 240 -302 2394 78 0 0 chr4 111103030 111103324 -73185338 + AluY SINE Alu 1 294 -17 991 251 97 60 chr4 111103324 111103497 -73185165 + MER34 LTR ERV1 240 451 -91 2176 112 3 16 chr4 111103497 111103809 -73184853 + AluSp SINE Alu 1 308 -5 991 251 97 60 chr4 111103809 111103905 -73184757 + MER34 LTR ERV1 451 542 0 547 214 31 82 chr4 111104018 111104187 -73184475 + MER5A DNA MER1_type 3 162 -27 2089 135 0 20 chr4 111104187 111104490 -73184172 - AluSx SINE Alu -15 297 1 547 214 31 82 chr4 111104490 111104516 -73184146 + MER5A DNA MER1_type 162 188 -1 223 322 68 58 chr4 111104751 111104810 -73183852 - L2 LINE L2 -657 2657 2600 1926 191 87 32 chr4 111104810 111105303 -73183359 - MLT2B1 LTR ERVL 0 520 1 223 322 68 58 chr4 111105303 111105448 -73183214 - L2 LINE L2 -714 2600 2451 321 219 87 105 chr4 111105714 111105993 -73182669 + MLT1G1 LTR MaLR 261 595 0 372 298 26 0 chr4 111106081 111106195 -73182467 - L2 LINE L2 -978 2336 2220 207 0 0 0 chr4 111106227 111106250 -73182412 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1969 159 0 0 chr4 111106360 111106656 -73182006 + AluJb SINE Alu 1 296 -16 273 247 21 62 chr4 111106661 111106758 -73181904 - L2 LINE L2 -1313 2001 1909 242 239 0 42 chr4 111106859 111106930 -73181732 + CT-rich Low_complexity Low_complexity 6 73 0 2033 118 0 21 chr4 111107314 111107634 -73181028 - AluSx SINE Alu 0 315 2 892 314 112 18 chr4 111108052 111108489 -73180173 + MLT1K LTR MaLR 104 581 -7 2214 75 46 0 chr4 111108580 111108861 -73179801 - AluSg SINE Alu -16 294 1 243 224 0 119 chr4 111108862 111108929 -73179733 - L2 LINE L2 -11 3302 3244 340 226 171 30 chr4 111108955 111109119 -73179543 - MER20 DNA MER1_type -6 213 27 413 253 68 29 chr4 111109469 111109762 -73178900 + L1MC5 LINE L1 7476 7823 -219 415 211 167 0 chr4 111109793 111109907 -73178755 + MIR SINE MIR 96 228 -34 2462 67 7 0 chr4 111109909 111110206 -73178456 + AluSp SINE Alu 2 300 -13 2262 100 0 20 chr4 111110272 111110571 -73178091 + AluSq SINE Alu 1 293 -20 2167 93 0 7 chr4 111110671 111110962 -73177700 + AluSg1 SINE Alu 1 289 -20 2061 80 45 3 chr4 111111094 111111382 -73177280 + AluY SINE Alu 1 300 -11 2402 52 3 13 chr4 111111382 111111687 -73176975 + AluY SINE Alu 1 302 -9 513 204 19 9 chr4 111111687 111111795 -73176867 + AluJb SINE Alu 134 242 -70 2125 112 7 0 chr4 111112104 111112407 -73176255 + AluSx SINE Alu 1 305 -7 2273 104 0 0 chr4 111113266 111113574 -73175088 - AluY SINE Alu -2 309 2 2422 93 0 6 chr4 111113807 111114118 -73174544 + AluSg SINE Alu 1 309 -1 1260 20 0 0 chr4 111114221 111114415 -73174247 + L1PA4 LINE L1 6005 6198 0 2387 73 0 3 chr4 111114427 111114728 -73173934 + AluY SINE Alu 1 300 -11 445 325 0 0 chr4 111114876 111114993 -73173669 + MIR3 SINE MIR 85 201 -7 1777 156 0 36 chr4 111115469 111115770 -73172892 + AluJo SINE Alu 1 290 -22 2247 98 0 13 chr4 111116200 111116505 -73172157 + AluSx SINE Alu 2 302 -10 21 36 0 0 chr4 111116587 111116615 -73172047 + AT_rich Low_complexity Low_complexity 1 28 0 1670 89 41 99 chr4 111116714 111117028 -73171634 + AluSp SINE Alu 1 296 -17 951 85 0 0 chr4 111117419 111117549 -73171113 + AluSg/x SINE Alu 177 306 -6 407 209 0 0 chr4 111117549 111117640 -73171022 - Charlie1 DNA MER1_type -61 2700 2610 7481 221 35 42 chr4 111117652 111117783 -73170879 + L1M4 LINE L1 2699 2829 -3317 2443 60 6 25 chr4 111117783 111118098 -73170564 + AluY SINE Alu 1 309 -2 7481 221 35 42 chr4 111118098 111118990 -73169672 + L1M4 LINE L1 2829 3726 -2420 2393 85 3 0 chr4 111118990 111119284 -73169378 + AluSp SINE Alu 3 297 -16 7481 221 35 42 chr4 111119284 111119295 -73169367 + L1M4 LINE L1 3726 3736 -2410 1836 165 0 13 chr4 111119295 111119598 -73169064 + AluJo SINE Alu 1 299 -13 7481 221 35 42 chr4 111119598 111120138 -73168524 + L1M4 LINE L1 3736 4278 -1868 2038 128 3 7 chr4 111120138 111120436 -73168226 + AluSx SINE Alu 1 297 -15 7481 221 35 42 chr4 111120436 111121331 -73167331 + L1M4 LINE L1 4278 5178 -968 2058 115 18 0 chr4 111121331 111121641 -73167021 + AluSx SINE Alu 1 315 0 1624 187 28 0 chr4 111121651 111121935 -73166727 + AluSx SINE Alu 2 293 -19 7481 221 35 42 chr4 111121935 111122042 -73166620 + L1M4 LINE L1 5187 5293 -853 1740 168 0 18 chr4 111122042 111122327 -73166335 + AluJb SINE Alu 1 280 -32 213 39 0 0 chr4 111122327 111122353 -73166309 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 1888 164 3 26 chr4 111122359 111122671 -73165991 + AluJo SINE Alu 3 307 -5 7481 221 35 42 chr4 111122671 111122804 -73165858 + L1M4 LINE L1 5297 5329 -817 518 115 44 26 chr4 111122807 111122920 -73165742 + L1MA9 LINE L1 6185 6299 -13 4175 167 24 16 chr4 111122948 111123003 -73165659 + L1MB7 LINE L1 5290 5343 -841 1808 200 22 44 chr4 111123003 111123408 -73165254 + MSTD LTR MaLR 1 396 0 4175 167 24 16 chr4 111123408 111124221 -73164441 + L1MB7 LINE L1 5343 6165 -19 2654 48 0 0 chr4 111126564 111126875 -73161787 - AluY SINE Alu 0 311 1 2143 117 7 0 chr4 111127016 111127314 -73161348 + AluSx SINE Alu 1 300 -12 2663 26 0 3 chr4 111127802 111128110 -73160552 + AluY SINE Alu 1 307 -4 24 0 0 0 chr4 111128263 111128287 -73160375 + AT_rich Low_complexity Low_complexity 1 24 0 571 188 62 9 chr4 111128729 111128841 -73159821 - FLAM_A SINE Alu -15 127 10 578 279 87 5 chr4 111129448 111129667 -73158995 - MIR SINE MIR -2 260 24 282 29 0 0 chr4 111129756 111129791 -73158871 + (TC)n Simple_repeat Simple_repeat 2 36 0 215 308 0 13 chr4 111131014 111131092 -73157570 - MIR3 SINE MIR -39 169 93 2036 72 0 0 chr4 111131149 111131399 -73157263 + AluSg SINE Alu 50 299 -11 390 348 7 13 chr4 111133159 111133314 -73155348 + MIR SINE MIR 103 256 -6 501 240 10 0 chr4 111133687 111133787 -73154875 + MER5A DNA MER1_type 9 109 -80 2149 180 31 14 chr4 111134558 111135003 -73153659 + MER31B LTR ERV1 1 453 -13 2361 92 0 0 chr4 111135018 111135313 -73153349 - AluSx SINE Alu -17 295 1 26 0 0 0 chr4 111135421 111135447 -73153215 + AT_rich Low_complexity Low_complexity 1 26 0 449 176 12 0 chr4 111135457 111135542 -73153120 + MER41E LTR ERV1 314 399 -113 789 248 155 5 chr4 111135973 111136179 -73152483 + MIR SINE MIR 25 261 -1 222 292 246 31 chr4 111136993 111137318 -73151344 + L2 LINE L2 2331 2725 -589 333 387 23 29 chr4 111137686 111137859 -73150803 + L2 LINE L2 3101 3272 0 845 198 6 24 chr4 111138257 111138392 -73150270 + AluJo SINE Alu 1 134 -178 2211 93 7 0 chr4 111138392 111138682 -73149980 + AluSc SINE Alu 1 292 -17 845 198 6 24 chr4 111138682 111138713 -73149949 + AluJo SINE Alu 134 164 -148 505 171 0 0 chr4 111138714 111138802 -73149860 + AluJ/FRAM SINE Alu 216 303 -9 181 275 46 83 chr4 111139455 111139564 -73149098 - L2 LINE L2 -276 2996 2892 2255 125 0 0 chr4 111139835 111140138 -73148524 + AluSg SINE Alu 1 303 -7 2526 84 0 0 chr4 111140941 111141252 -73147410 + AluY SINE Alu 1 311 0 270 192 0 0 chr4 111141336 111141388 -73147274 - MLT2B3 LTR ERVL 0 554 503 426 85 0 0 chr4 111141388 111141447 -73147215 + (TGGA)n Simple_repeat Simple_repeat 4 62 0 2535 181 55 25 chr4 111141470 111141996 -73146666 - MLT2B3 LTR ERVL -19 515 1 349 316 140 15 chr4 111142963 111143099 -73145563 - L2 LINE L2 -4 3268 3116 1598 132 0 13 chr4 111143295 111143530 -73145132 + AluSx SINE Alu 1 232 -80 593 133 11 0 chr4 111143530 111143620 -73145042 + AluSg/x SINE Alu 196 286 -23 26 0 0 0 chr4 111143623 111143649 -73145013 + AT_rich Low_complexity Low_complexity 1 26 0 231 271 0 29 chr4 111143672 111143742 -73144920 - MIR3 SINE MIR -136 72 5 209 419 8 0 chr4 111143808 111143932 -73144730 - L2 LINE L2 -395 2919 2795 23 0 0 0 chr4 111144019 111144042 -73144620 + AT_rich Low_complexity Low_complexity 1 23 0 540 342 111 33 chr4 111144119 111144604 -73144058 - L2 LINE L2 -550 2764 2242 429 314 126 29 chr4 111144608 111144949 -73143713 + MLT1J LTR MaLR 5 378 -133 234 331 221 18 chr4 111145007 111145333 -73143329 - L2 LINE L2 -1080 2234 1843 978 164 20 41 chr4 111145342 111145537 -73143125 + AluJo SINE Alu 1 191 -121 1370 181 92 0 chr4 111145642 111145913 -73142749 - AluJb SINE Alu -16 296 1 240 35 0 0 chr4 111146075 111146104 -73142558 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 572 202 28 0 chr4 111146107 111146216 -73142446 - FLAM_A SINE Alu -17 116 5 1560 154 6 97 chr4 111146794 111146927 -73141735 + AluJo SINE Alu 2 145 -157 1623 133 91 4 chr4 111146927 111147190 -73141472 - AluSg SINE Alu -23 287 2 1560 154 6 97 chr4 111147190 111147201 -73141461 + AluJo SINE Alu 145 155 -147 2156 120 7 3 chr4 111147201 111147500 -73141162 - AluSg SINE Alu -10 300 1 1560 154 6 97 chr4 111147500 111147685 -73140977 + AluJo SINE Alu 155 302 0 1177 165 78 0 chr4 111147908 111148114 -73140548 - AluJb SINE Alu -11 301 80 2087 109 3 14 chr4 111148298 111148592 -73140070 - AluSg SINE Alu -19 291 1 296 24 24 0 chr4 111149018 111149059 -73139603 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 345 264 8 72 chr4 111149455 111149489 -73139173 + L2 LINE L2 3156 3191 -81 2324 98 0 7 chr4 111149489 111149795 -73138867 - AluSq SINE Alu -9 304 1 345 264 8 72 chr4 111149795 111149885 -73138777 + L2 LINE L2 3191 3272 0 565 266 75 104 chr4 111149955 111150490 -73138172 + MLT1G1 LTR MaLR 20 590 -5 540 275 131 27 chr4 111150691 111150913 -73137749 - MIR SINE MIR 0 262 18 210 150 0 25 chr4 111150942 111150982 -73137680 + (CCA)n Simple_repeat Simple_repeat 1 39 0 206 208 55 31 chr4 111151359 111151440 -73137222 + MIR3 SINE MIR 101 185 -23 2075 120 3 10 chr4 111151441 111151742 -73136920 - AluSx SINE Alu -13 299 1 22 35 0 0 chr4 111151751 111151780 -73136882 + AT_rich Low_complexity Low_complexity 1 29 0 1491 159 38 0 chr4 111151956 111152246 -73136416 + L1MB2 LINE L1 5871 6171 0 1019 170 236 13 chr4 111152561 111152820 -73135842 - AluSg1 SINE Alu 0 310 1 332 264 81 27 chr4 111153094 111153242 -73135420 + L1ME4a LINE L1 5962 6117 -4 204 171 0 24 chr4 111153766 111153807 -73134855 + (TA)n Simple_repeat Simple_repeat 2 41 0 2304 102 0 0 chr4 111153848 111154153 -73134509 + AluSx SINE Alu 1 305 -7 207 77 51 26 chr4 111154233 111154272 -73134390 + (AATTG)n Simple_repeat Simple_repeat 4 43 0 2109 117 7 7 chr4 111154677 111154986 -73133676 - AluSg1 SINE Alu 0 309 1 1079 76 0 0 chr4 111154992 111155123 -73133539 - AluSg SINE Alu -179 131 1 1318 161 82 55 chr4 111155384 111155676 -73132986 + AluJo SINE Alu 1 300 -2 400 204 68 11 chr4 111155678 111155766 -73132896 + MIR SINE MIR 108 200 -62 347 209 209 32 chr4 111155768 111155926 -73132736 + MER63A DNA MER1_type 1 186 -24 648 209 72 39 chr4 111155968 111156121 -73132541 + FAM SINE Alu 1 158 -17 1812 138 7 36 chr4 111156176 111156481 -73132181 - AluJo SINE Alu -16 296 1 513 167 0 0 chr4 111156501 111156603 -73132059 - L1MA8 LINE L1 -21 6270 6169 1037 176 45 22 chr4 111156603 111156774 -73131888 - AluJb SINE Alu -4 308 129 2121 87 7 14 chr4 111156774 111157061 -73131601 - AluSc SINE Alu -21 288 4 1037 176 45 22 chr4 111157061 111157111 -73131551 - AluJb SINE Alu -183 129 82 312 224 0 30 chr4 111160282 111160349 -73128313 + MIR3 SINE MIR 123 187 -21 1930 196 64 31 chr4 111160798 111161343 -73127319 - L1MC3 LINE L1 -8 7777 7215 21 36 0 0 chr4 111162094 111162122 -73126540 + AT_rich Low_complexity Low_complexity 1 28 0 236 373 73 0 chr4 111162519 111162629 -73126033 + L2 LINE L2 3108 3225 -47 207 0 0 0 chr4 111162649 111162672 -73125990 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 451 216 67 90 chr4 111162774 111163029 -73125633 - L1MC5 LINE L1 -48 7913 7665 289 241 19 65 chr4 111163233 111163341 -73125321 + L1PB4 LINE L1 5955 6058 -97 326 353 128 9 chr4 111163601 111163819 -73124843 + MIR SINE MIR 19 262 0 2352 93 3 13 chr4 111164328 111164639 -73124023 + AluSg SINE Alu 3 310 0 793 212 36 6 chr4 111165832 111165997 -73122665 - MER5A DNA MER1_type -3 186 17 194 288 27 41 chr4 111166096 111166169 -73122493 - MER5A DNA MER1_type -99 90 19 353 367 75 5 chr4 111166539 111166727 -73121935 + MIR SINE MIR 58 258 -4 2076 145 0 0 chr4 111168396 111168706 -73119956 - AluJb SINE Alu -2 310 1 22 56 0 0 chr4 111168744 111168780 -73119882 + AT_rich Low_complexity Low_complexity 1 36 0 239 300 0 29 chr4 111168802 111168872 -73119790 - L2 LINE L2 -993 2321 2254 518 308 126 55 chr4 111168915 111169600 -73119062 - L2 LINE L2 -1317 1997 1265 387 241 45 68 chr4 111170993 111171126 -73117536 - MIR SINE MIR -85 177 48 180 0 0 0 chr4 111172287 111172307 -73116355 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1683 70 0 52 chr4 111173701 111173930 -73114732 - AluSc SINE Alu -11 298 82 728 155 14 78 chr4 111173936 111173969 -73114693 - FLAM_A SINE Alu -169 133 99 1874 81 3 56 chr4 111173969 111174254 -73114408 + AluY SINE Alu 1 270 -41 728 155 14 78 chr4 111174254 111174362 -73114300 - FLAM_A SINE Alu -203 99 1 1211 62 7 0 chr4 111174638 111174783 -73113879 + AluY SINE Alu 1 146 -165 2206 91 0 57 chr4 111174929 111175247 -73113415 + AluSc SINE Alu 1 300 -9 1883 153 6 16 chr4 111175271 111175584 -73113078 + AluSx SINE Alu 1 310 -2 471 35 0 0 chr4 111176943 111177000 -73111662 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 1522 167 0 73 chr4 111177004 111177304 -73111358 - AluJo SINE Alu -30 282 5 2247 96 10 0 chr4 111177315 111177608 -73111054 - AluSx SINE Alu -16 296 1 2892 80 3 0 chr4 111177765 111178154 -73110508 + L1PA5 LINE L1 5762 6151 -3 1474 216 56 50 chr4 111178382 111178900 -73109762 - MER39 LTR ERV1 0 707 1 3395 200 20 30 chr4 111180519 111181039 -73107623 + L1PA15 LINE L1 4483 4992 -1154 2295 97 0 3 chr4 111181039 111181339 -73107323 - AluSg1 SINE Alu -10 299 1 3395 200 20 30 chr4 111181339 111181678 -73106984 + L1PA15 LINE L1 4992 5333 -813 1879 143 14 11 chr4 111181678 111181964 -73106698 + AluSx SINE Alu 1 287 -25 270 81 0 0 chr4 111181965 111182002 -73106660 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 628 203 146 0 chr4 111182006 111182164 -73106498 - L1 LINE L1 -3529 2617 2437 812 144 15 8 chr4 111182180 111182312 -73106350 + FLAM_C SINE Alu 1 133 0 4653 118 17 18 chr4 111182321 111182481 -73106181 + L1PA15 LINE L1 5324 5483 -682 2222 109 3 13 chr4 111182481 111182794 -73105868 + AluY SINE Alu 2 311 0 4653 118 17 18 chr4 111182794 111183413 -73105249 + L1PA15 LINE L1 5483 6102 -63 5566 110 35 38 chr4 111183432 111184874 -73103788 + pTR5 LTR ERV1 738 2606 0 1600 182 0 4 chr4 111184879 111185154 -73103508 - AluSx SINE Alu -38 274 1 439 132 0 0 chr4 111185162 111185230 -73103432 + L1PA15 LINE L1 6097 6164 -1 2450 51 0 0 chr4 111186310 111186604 -73102058 - AluY SINE Alu -17 294 1 399 252 68 0 chr4 111186790 111186893 -73101769 - L1MC4a LINE L1 -1884 5924 5815 225 222 67 22 chr4 111186902 111186992 -73101670 - L1MC5 LINE L1 -37 7924 7831 646 201 99 59 chr4 111186992 111187295 -73101367 + L1MC5 LINE L1 7613 7927 -34 898 251 117 54 chr4 111187300 111187917 -73100745 - L1MC5 LINE L1 -136 7825 7265 429 243 38 34 chr4 111187925 111188103 -73100559 - L1MC4 LINE L1 -728 7233 7071 323 266 78 8 chr4 111188437 111188565 -73100097 + MIR SINE MIR 112 248 -14 2048 111 111 18 chr4 111188854 111189195 -73099467 + THE1C LTR MaLR 1 373 -2 10003 167 19 7 chr4 111189197 111190828 -73097834 + THE1C-int LTR MaLR 1 1651 0 2256 108 66 30 chr4 111190828 111191190 -73097472 + THE1C LTR MaLR 1 375 0 2095 87 4 4 chr4 111191388 111191653 -73097009 + AluSx SINE Alu 1 265 -47 370 314 0 20 chr4 111192805 111192907 -73095755 - L2 LINE L2 -4 3268 3169 251 185 169 0 chr4 111192994 111193059 -73095603 + MER5A DNA MER1_type 93 168 -21 764 234 119 14 chr4 111193454 111193672 -73094990 - MIR SINE MIR 0 262 22 26 30 0 0 chr4 111194680 111194713 -73093949 + AT_rich Low_complexity Low_complexity 1 33 0 2335 97 3 7 chr4 111194801 111195110 -73093552 - AluSx SINE Alu -4 308 1 1975 132 61 31 chr4 111195239 111195566 -73093096 - MER1B DNA MER1_type 0 337 1 2044 195 115 9 chr4 111195585 111196036 -73092626 - MLT1D LTR MaLR 0 505 7 2860 94 2 5 chr4 111246539 111246942 -73041720 + L1PB2 LINE L1 5746 6147 -4 210 313 37 104 chr4 111247057 111247261 -73041401 - MIR SINE MIR -74 188 4 295 366 0 0 chr4 111247370 111247471 -73041191 - L3 LINE CR1 -857 720 620 467 186 35 0 chr4 111247859 111247945 -73040717 + MER44D DNA MER2_type 517 605 0 290 341 22 0 chr4 111248004 111248095 -73040567 + L2 LINE L2 3221 3313 0 24 53 0 0 chr4 111248706 111248744 -73039918 + AT_rich Low_complexity Low_complexity 1 38 0 293 306 64 0 chr4 111249007 111249164 -73039498 - L1ME LINE L1 -422 5699 5533 342 61 0 0 chr4 111249698 111249747 -73038915 + (GGAA)n Simple_repeat Simple_repeat 3 51 0 230 337 61 46 chr4 111250308 111250504 -73038158 - L2 LINE L2 -260 3012 2814 3691 24 0 0 chr4 111250700 111251122 -73037540 - L1PA3 LINE L1 -136 6019 5598 1214 21 0 0 chr4 111251122 111251261 -73037401 + L1PA3 LINE L1 6010 6150 -5 207 0 0 0 chr4 111251264 111251287 -73037375 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2322 85 3 7 chr4 111252229 111252534 -73036128 + AluSg1 SINE Alu 6 309 0 345 255 66 9 chr4 111252667 111252773 -73035889 + L1ME4a LINE L1 5732 5843 -278 2127 80 7 24 chr4 111252882 111253170 -73035492 - AluSg1 SINE Alu -24 285 3 2112 122 0 3 chr4 111253279 111253574 -73035088 - AluSx SINE Alu -18 294 1 5882 97 36 2 chr4 111254174 111255370 -73033292 - L1PA16 LINE L1 -9 6157 4941 581 180 36 0 chr4 111255435 111255546 -73033116 + L1ME LINE L1 5520 5634 -530 365 311 9 19 chr4 111256691 111256797 -73031865 - MER5A DNA MER1_type -36 153 49 3374 139 82 2 chr4 111256799 111257394 -73031268 + L1PA16 LINE L1 5522 6164 -2 530 220 5 120 chr4 111257468 111257668 -73030994 + MER5B DNA MER1_type 2 178 0 245 250 34 80 chr4 111258572 111258660 -73030002 + MIR SINE MIR 105 188 -74 26 0 0 0 chr4 111259404 111259430 -73029232 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr4 111260014 111260036 -73028626 + AT_rich Low_complexity Low_complexity 1 22 0 538 138 0 98 chr4 111260227 111260327 -73028335 + L1PB4 LINE L1 6029 6116 -40 2261 95 0 3 chr4 111260327 111260631 -73028031 + AluSq SINE Alu 1 303 -10 538 138 0 98 chr4 111260631 111260653 -73028009 + L1PB4 LINE L1 6116 6139 -17 243 0 0 0 chr4 111260826 111260853 -73027809 + (TCTCCC)n Simple_repeat Simple_repeat 1 27 0 1224 123 0 15 chr4 111261107 111261302 -73027360 - L1MA2 LINE L1 0 6304 6113 5203 133 25 21 chr4 111261302 111261576 -73027086 - L1MA3 LINE L1 -260 6045 5774 2549 61 3 0 chr4 111261576 111261886 -73026776 - AluY SINE Alu 0 311 1 5203 133 25 21 chr4 111261886 111262830 -73025832 - L1MA3 LINE L1 -531 5774 4810 32 0 0 0 chr4 111262946 111262978 -73025684 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr4 111263342 111263371 -73025291 + AT_rich Low_complexity Low_complexity 1 29 0 326 304 105 22 chr4 111263421 111263602 -73025060 - L1ME4a LINE L1 -110 6011 5816 322 309 57 8 chr4 111264288 111264424 -73024238 - MIR3 SINE MIR -24 184 44 358 335 76 43 chr4 111266028 111266213 -73022449 - MIR SINE MIR -36 226 36 408 269 29 0 chr4 111266713 111266817 -73021845 - L3b LINE CR1 -199 1384 1278 2081 94 49 7 chr4 111266999 111267286 -73021376 - AluSg SINE Alu -10 300 2 222 37 0 0 chr4 111267358 111267385 -73021277 + (TTAA)n Simple_repeat Simple_repeat 2 28 0 1701 130 0 4 chr4 111267385 111267623 -73021039 - AluSg SINE Alu -25 285 49 1667 116 20 14 chr4 111267714 111268006 -73020656 + L1MA8 LINE L1 5993 6286 -5 564 165 114 84 chr4 111268075 111268348 -73020314 - LTR37B LTR ERV1 -2 466 186 24 0 0 0 chr4 111269188 111269212 -73019450 + AT_rich Low_complexity Low_complexity 1 24 0 253 322 217 0 chr4 111269880 111270023 -73018639 - MIR SINE MIR -13 249 76 2079 126 7 0 chr4 111271475 111271769 -73016893 - AluSx SINE Alu -16 296 1 208 278 42 76 chr4 111271769 111271913 -73016749 + MIR SINE MIR 78 216 -46 192 367 47 23 chr4 111272136 111272264 -73016398 + L2 LINE L2 3133 3263 -9 35 0 0 0 chr4 111272807 111272842 -73015820 + AT_rich Low_complexity Low_complexity 1 35 0 2546 69 3 0 chr4 111272842 111273176 -73015486 - L1PA8 LINE L1 -1 6171 5837 2212 108 3 3 chr4 111273238 111273535 -73015127 + AluSx SINE Alu 1 297 -15 2011 182 84 0 chr4 111273603 111274021 -73014641 - L1MB3 LINE L1 0 6183 5731 338 325 68 0 chr4 111274166 111274283 -73014379 + MIR SINE MIR 33 157 -105 3695 161 15 28 chr4 111274289 111274937 -73013725 - MER52A LTR ERV1 0 1755 1116 231 318 85 31 chr4 111275389 111275518 -73013144 - MIR3 SINE MIR -71 137 2 183 80 0 0 chr4 111276661 111276686 -73011976 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 2221 78 24 17 chr4 111277852 111278146 -73010516 + AluSp SINE Alu 1 296 -17 2187 103 66 29 chr4 111278699 111279049 -73009613 - THE1B LTR MaLR -1 363 1 1450 60 0 0 chr4 111280267 111280449 -73008213 + L1PB1 LINE L1 5969 6150 -1 189 169 22 11 chr4 111280455 111280544 -73008118 + (TA)n Simple_repeat Simple_repeat 1 90 0 230 0 33 0 chr4 111280903 111280933 -73007729 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1195 78 198 0 chr4 111281398 111281590 -73007072 + MER30 DNA MER1_type 1 230 0 287 262 155 0 chr4 111282631 111282734 -73005928 - L2 LINE L2 -8 3305 3187 303 56 0 0 chr4 111283540 111283576 -73005086 - U2 snRNA snRNA -152 36 1 229 274 39 0 chr4 111283579 111283655 -73005007 - MIR SINE MIR -30 178 95 24 67 0 0 chr4 111283658 111283703 -73004959 + AT_rich Low_complexity Low_complexity 1 45 0 28 0 0 0 chr4 111284410 111284438 -73004224 + AT_rich Low_complexity Low_complexity 1 28 0 1720 179 7 0 chr4 111284448 111284728 -73003934 + AluJo SINE Alu 3 284 -28 488 153 92 0 chr4 111285242 111285340 -73003322 + MLT2C1 LTR ERVL 1 107 -290 2076 95 46 3 chr4 111285427 111285712 -73002950 + AluSc SINE Alu 1 297 -12 329 203 0 0 chr4 111285835 111285899 -73002763 - MLT1B LTR MaLR -7 383 320 2455 193 81 77 chr4 111285916 111286606 -73002056 - MLT1A1-int LTR MaLR -629 742 50 1477 97 0 0 chr4 111286606 111286791 -73001871 - AluSg/x SINE Alu -17 293 109 644 295 174 59 chr4 111287465 111287838 -73000824 - L2 LINE L2 0 3313 2898 1704 170 21 50 chr4 111288198 111288574 -73000088 - MLT1A1 LTR MaLR 0 365 1 346 325 155 15 chr4 111288816 111289022 -72999640 + L2 LINE L2 3030 3264 -8 388 272 48 10 chr4 111289265 111289368 -72999294 + L2 LINE L2 3191 3297 -16 259 328 92 8 chr4 111289383 111289502 -72999160 - MIR SINE MIR -78 184 56 277 246 46 0 chr4 111290000 111290065 -72998597 + MLT1J2 LTR MaLR 3 70 -380 1643 201 25 14 chr4 111290065 111290468 -72998194 + MLT1C LTR MaLR 1 467 0 612 284 132 29 chr4 111290470 111290811 -72997851 + MLT1J1 LTR MaLR 67 442 -4 731 165 0 9 chr4 111291378 111291493 -72997169 + FLAM_C SINE Alu 3 116 -17 500 394 24 62 chr4 111291852 111292268 -72996394 - L2 LINE L2 -1 3271 2872 1624 209 11 45 chr4 111292381 111292463 -72996199 + MLT1A1 LTR MaLR 13 96 -269 2992 148 9 36 chr4 111292463 111292990 -72995672 - MLT2B2 LTR ERVL 0 515 3 1624 209 11 45 chr4 111292990 111293261 -72995401 + MLT1A1 LTR MaLR 96 354 -11 195 337 82 43 chr4 111293638 111293893 -72994769 - L2 LINE L2 -459 2855 2591 289 319 38 19 chr4 111294018 111294178 -72994484 - MIR3 SINE MIR -10 198 36 198 0 0 0 chr4 111294446 111294468 -72994194 + (CAG)n Simple_repeat Simple_repeat 2 23 0 331 385 30 12 chr4 111295134 111295303 -72993359 - MIR3 SINE MIR -12 196 25 606 239 195 63 chr4 111295895 111296419 -72992243 - MLT1G1 LTR MaLR -2 593 1 2068 229 79 12 chr4 111297772 111298253 -72990409 - LTR40a LTR ERVL -6 513 1 240 432 0 0 chr4 111298472 111298583 -72990079 + MIR SINE MIR 25 135 -73 238 346 50 0 chr4 111300311 111300412 -72988250 - L2 LINE L2 -4 3268 3163 213 39 0 0 chr4 111301330 111301356 -72987306 + (CA)n Simple_repeat Simple_repeat 2 27 0 338 336 36 29 chr4 111301571 111301708 -72986954 + MIR3 SINE MIR 35 172 -36 25 31 0 0 chr4 111303662 111303694 -72984968 + AT_rich Low_complexity Low_complexity 1 32 0 29 28 0 0 chr4 111303750 111303786 -72984876 + AT_rich Low_complexity Low_complexity 1 36 0 188 328 170 26 chr4 111303808 111304119 -72984543 - L3b LINE CR1 -10 1573 1218 1654 146 61 34 chr4 111305425 111305720 -72982942 + AluJo SINE Alu 7 309 -3 314 213 53 27 chr4 111306482 111306557 -72982105 + L2 LINE L2 3194 3270 -2 311 330 110 16 chr4 111306571 111306762 -72981900 + L2 LINE L2 2888 3096 -176 523 284 142 6 chr4 111307924 111308100 -72980562 + MIR SINE MIR 32 231 -31 431 238 38 0 chr4 111308185 111308290 -72980372 + MIR SINE MIR 90 198 -64 1355 227 75 24 chr4 111308660 111309035 -72979627 - MER63D DNA MER1_type 0 1061 668 848 208 37 57 chr4 111309057 111309438 -72979224 - MER63D DNA MER1_type -626 435 1 375 301 49 46 chr4 111309737 111309991 -72978671 - L1ME4a LINE L1 -253 5868 5611 2823 7 0 0 chr4 111309991 111310297 -72978365 - AluYa5 SINE Alu -5 306 1 375 301 49 46 chr4 111310297 111310371 -72978291 - L1ME4a LINE L1 -510 5611 5539 2454 87 0 0 chr4 111310426 111310735 -72977927 - AluY SINE Alu -2 309 1 384 217 125 33 chr4 111310823 111310943 -72977719 - L2 LINE L2 -3 3310 3180 233 304 144 20 chr4 111311277 111311527 -72977135 - L1ME4a LINE L1 -981 5165 4885 227 330 57 9 chr4 111313380 111313486 -72975176 - MIR SINE MIR -82 126 16 21 36 0 0 chr4 111313571 111313599 -72975063 + AT_rich Low_complexity Low_complexity 1 28 0 442 303 66 0 chr4 111314245 111314397 -72974265 + MIR SINE MIR 68 229 -33 448 295 13 7 chr4 111315190 111315339 -72973323 + MIR SINE MIR 3 152 -110 1104 260 56 7 chr4 111315818 111316106 -72972556 + MLT1I LTR MaLR 108 409 0 199 326 0 0 chr4 111317538 111317587 -72971075 - MIR SINE MIR -144 64 16 261 268 0 0 chr4 111317730 111317786 -72970876 + GA-rich Low_complexity Low_complexity 2 57 0 308 186 330 0 chr4 111318551 111318648 -72970014 + MIR SINE MIR 23 151 -111 282 319 72 12 chr4 111318725 111318891 -72969771 - L2 LINE L2 -1 3312 3137 472 182 61 74 chr4 111319082 111319230 -72969432 - MIR SINE MIR -6 256 111 381 193 6 21 chr4 111319331 111319664 -72968998 + (TA)n Simple_repeat Simple_repeat 1 327 0 244 162 36 9 chr4 111319717 111319828 -72968834 + (TA)n Simple_repeat Simple_repeat 2 115 0 21 57 0 0 chr4 111321030 111321065 -72967597 + AT_rich Low_complexity Low_complexity 1 35 0 2283 98 0 16 chr4 111321484 111321802 -72966860 + AluSq SINE Alu 1 313 0 558 233 10 0 chr4 111322155 111322258 -72966404 - L2 LINE L2 -19 3294 3191 295 261 44 111 chr4 111322730 111322956 -72965706 + MIR SINE MIR 1 211 -51 680 234 53 23 chr4 111323073 111323244 -72965418 - MIR SINE MIR -22 240 65 2289 88 0 0 chr4 111323471 111323767 -72964895 + AluSx SINE Alu 1 296 -16 265 236 0 0 chr4 111323771 111323826 -72964836 + MIR SINE MIR 206 260 -2 1632 169 0 4 chr4 111324241 111324528 -72964134 - AluJb SINE Alu 0 315 30 1312 306 32 22 chr4 111324847 111324970 -72963692 + L2 LINE L2 2699 2819 -494 234 0 0 0 chr4 111324970 111324996 -72963666 + (CA)n Simple_repeat Simple_repeat 2 27 0 1312 306 32 22 chr4 111324996 111325465 -72963197 + L2 LINE L2 2819 3297 -16 615 335 66 49 chr4 111325734 111326203 -72962459 - L3 LINE CR1 -4 1573 1097 2272 97 3 0 chr4 111326318 111326616 -72962046 + AluSp SINE Alu 2 300 -13 205 349 0 23 chr4 111326636 111326722 -72961940 - MIR SINE MIR -98 164 81 556 248 68 45 chr4 111326769 111327124 -72961538 - L1MC5 LINE L1 -35 7926 7564 2379 92 0 0 chr4 111327604 111327907 -72960755 - AluSx SINE Alu -9 303 1 756 83 0 0 chr4 111327910 111328006 -72960656 - AluY SINE Alu -179 132 37 1424 142 9 9 chr4 111328462 111328688 -72959974 + AluSg/x SINE Alu 85 310 -2 2324 90 0 3 chr4 111329210 111329509 -72959153 - AluSg SINE Alu -11 299 2 1946 133 0 17 chr4 111329644 111329945 -72958717 - AluJb SINE Alu -6 306 11 815 109 0 0 chr4 111330989 111331099 -72957563 + AluSg/x SINE Alu 186 295 -15 1854 166 3 69 chr4 111331106 111331485 -72957177 - MLT1B LTR MaLR -36 354 1 311 351 22 30 chr4 111332425 111332559 -72956103 - L2 LINE L2 -2819 495 363 702 232 49 64 chr4 111332597 111332748 -72955914 - LTR37B LTR ERV1 0 468 316 2007 121 66 33 chr4 111332748 111333111 -72955551 + THE1C LTR MaLR 1 375 0 702 232 49 64 chr4 111333111 111333472 -72955190 - LTR37B LTR ERV1 -152 316 11 203 265 0 20 chr4 111333732 111333781 -72954881 + MER5B DNA MER1_type 1 48 -130 219 114 0 0 chr4 111333782 111333817 -72954845 + (TTTTG)n Simple_repeat Simple_repeat 3 37 0 2414 74 3 0 chr4 111334817 111335116 -72953546 + AluY SINE Alu 1 300 -11 24 0 0 0 chr4 111335582 111335606 -72953056 + AT_rich Low_complexity Low_complexity 1 24 0 188 283 50 82 chr4 111336323 111336641 -72952021 + L2 LINE L2 1732 2039 -1275 649 254 157 12 chr4 111336974 111337329 -72951333 + Charlie8 DNA MER1_type 17 411 -2006 187 342 45 27 chr4 111338120 111338231 -72950431 - L2 LINE L2 -583 2731 2619 262 213 0 0 chr4 111339332 111339379 -72949283 + L2 LINE L2 3197 3243 -70 840 302 71 36 chr4 111339526 111340019 -72948643 - L2 LINE L2 0 3313 2804 952 118 14 0 chr4 111340211 111340355 -72948307 - L1PA10 LINE L1 -4 6164 6019 272 152 0 0 chr4 111341727 111341773 -72946889 + MER39 LTR ERV1 1 46 -661 304 203 0 29 chr4 111341777 111341846 -72946816 + L1MC4 LINE L1 6636 6702 -1340 213 211 0 0 chr4 111341846 111341884 -72946778 + (CATA)n Simple_repeat Simple_repeat 2 39 0 2238 108 7 0 chr4 111342510 111342805 -72945857 - AluSx SINE Alu -15 297 1 1416 197 3 40 chr4 111342856 111343160 -72945502 + AluJo SINE Alu 1 293 -19 26 0 0 0 chr4 111345970 111345996 -72942666 + AT_rich Low_complexity Low_complexity 1 26 0 825 218 0 35 chr4 111347162 111347336 -72941326 + FRAM SINE Alu 1 168 -8 300 215 116 58 chr4 111348018 111348139 -72940523 - MIR SINE MIR -70 192 65 2722 29 0 0 chr4 111348193 111348502 -72940160 + AluY SINE Alu 1 309 -2 222 293 53 0 chr4 111348568 111348643 -72940019 - MIR SINE MIR -13 249 171 789 206 28 129 chr4 111348797 111349083 -72939579 + MIR SINE MIR 3 259 -3 22 56 0 0 chr4 111349912 111349948 -72938714 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr4 111351305 111351325 -72937337 + (TTG)n Simple_repeat Simple_repeat 1 20 0 27 0 0 0 chr4 111351421 111351448 -72937214 + AT_rich Low_complexity Low_complexity 1 27 0 337 285 48 72 chr4 111351466 111351504 -72937158 + L1ME LINE L1 5600 5637 -484 3109 154 15 7 chr4 111351504 111352042 -72936620 + MER34 LTR ERV1 1 542 0 337 285 48 72 chr4 111352042 111352210 -72936452 + L1ME LINE L1 5637 5801 -320 653 250 68 91 chr4 111352210 111352550 -72936112 + MER46C DNA MER2_type 1 332 -6 709 268 49 45 chr4 111352657 111352922 -72935740 + L2 LINE L2 3048 3313 0 255 31 0 0 chr4 111353393 111353425 -72935237 + (TG)n Simple_repeat Simple_repeat 2 33 0 182 202 36 143 chr4 111355437 111355521 -72933141 - L3 LINE CR1 -583 994 920 22 0 0 0 chr4 111356605 111356627 -72932035 + AT_rich Low_complexity Low_complexity 1 22 0 910 315 49 35 chr4 111356656 111357044 -72931618 - L1MC/D LINE L1 -486 5635 5274 3750 157 20 11 chr4 111357044 111357245 -72931417 - L1MA4A LINE L1 -7 6296 6098 2389 168 21 12 chr4 111357245 111357667 -72930995 - MSTB LTR MaLR 0 426 1 3750 157 20 11 chr4 111357667 111358170 -72930492 - L1MA4A LINE L1 -205 6098 5586 910 315 49 35 chr4 111358170 111358400 -72930262 - L1MC/D LINE L1 -847 5274 5049 5197 148 56 15 chr4 111358413 111359259 -72929403 + Tigger3b DNA MER2_type 1 891 -2137 191 88 29 0 chr4 111359259 111359293 -72929369 + (CTCA)n Simple_repeat Simple_repeat 4 38 0 5197 148 56 15 chr4 111359293 111359386 -72929276 + Tigger3b DNA MER2_type 891 979 -252 2240 104 13 0 chr4 111359758 111360057 -72928605 - AluSq SINE Alu -10 303 1 868 233 65 121 chr4 111360618 111361189 -72927473 + MER34 LTR ERV1 1 539 -3 302 323 54 24 chr4 111361629 111361796 -72926866 + MIR SINE MIR 36 207 -55 21 0 0 0 chr4 111362049 111362070 -72926592 + AT_rich Low_complexity Low_complexity 1 21 0 582 265 19 0 chr4 111362295 111362457 -72926205 - MER103 DNA DNA -1 165 1 375 221 0 29 chr4 111363219 111363355 -72925307 + (TATATG)n Simple_repeat Simple_repeat 4 135 0 245 197 91 0 chr4 111363355 111363421 -72925241 + L1MA8 LINE L1 6217 6288 -3 1427 110 13 13 chr4 111363757 111363993 -72924669 + L1MA8 LINE L1 6053 6288 -3 2222 87 45 42 chr4 111364150 111364505 -72924157 + L1MA1 LINE L1 5947 6302 0 906 204 113 44 chr4 111364681 111364999 -72923663 - L1ME1 LINE L1 -4 6162 5823 198 0 0 0 chr4 111365492 111365514 -72923148 + (A)n Simple_repeat Simple_repeat 1 22 0 1715 113 100 41 chr4 111365514 111365805 -72922857 - AluSg SINE Alu -2 308 1 217 299 0 15 chr4 111366068 111366135 -72922527 - L2 LINE L2 -8 3264 3199 414 0 0 0 chr4 111366150 111366196 -72922466 + (CA)n Simple_repeat Simple_repeat 2 47 0 212 233 0 0 chr4 111367064 111367107 -72921555 + (TG)n Simple_repeat Simple_repeat 2 44 0 273 260 27 0 chr4 111368392 111368465 -72920197 + GA-rich Low_complexity Low_complexity 2 76 0 368 289 96 60 chr4 111368922 111369140 -72919522 + MIR SINE MIR 37 262 0 2375 213 23 5 chr4 111369904 111370465 -72918197 - MER90 LTR ERV1 0 614 2 1530 163 21 25 chr4 111370828 111371110 -72917552 - AluJo SINE Alu -16 296 16 336 248 316 0 chr4 111371927 111372060 -72916602 + L3 LINE CR1 1400 1574 -3 427 247 133 36 chr4 111372171 111372337 -72916325 + MER5A DNA MER1_type 8 189 0 1300 175 33 33 chr4 111372341 111372615 -72916047 + AluJo SINE Alu 1 274 -38 357 82 0 0 chr4 111372619 111372668 -72915994 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 309 199 110 52 chr4 111372829 111372965 -72915697 - MIR SINE MIR -9 253 110 2116 180 0 5 chr4 111376077 111376444 -72912218 - MLT1A1 LTR MaLR 0 365 1 23 54 0 0 chr4 111377452 111377489 -72911173 + AT_rich Low_complexity Low_complexity 1 37 0 420 301 37 61 chr4 111377529 111377775 -72910887 - MIR SINE MIR 0 262 23 207 0 0 0 chr4 111377910 111377933 -72910729 + (T)n Simple_repeat Simple_repeat 1 23 0 1673 131 0 0 chr4 111378964 111379238 -72909424 + L1MA2 LINE L1 6031 6304 0 21 0 0 0 chr4 111382453 111382474 -72906188 + AT_rich Low_complexity Low_complexity 1 21 0 551 284 56 6 chr4 111382568 111382730 -72905932 - MIR3 SINE MIR -6 202 33 514 366 62 55 chr4 111383500 111383902 -72904760 - L2 LINE L2 0 3272 2868 * 747 226 85 42 chr4 111383881 111384093 -72904569 + MIR SINE MIR 21 241 -21 183 357 149 15 chr4 111384109 111384719 -72903943 - L2 LINE L2 -426 2888 2197 1855 152 23 13 chr4 111385912 111386221 -72902441 + AluJb SINE Alu 1 312 0 2524 98 13 24 chr4 111388888 111389267 -72899395 - THE1C LTR MaLR 0 375 1 216 0 0 0 chr4 111389876 111389900 -72898762 + (T)n Simple_repeat Simple_repeat 1 24 0 183 322 147 63 chr4 111390029 111390088 -72898574 + L2 LINE L2 3116 3169 -103 2169 116 20 0 chr4 111390088 111390389 -72898273 - AluSx SINE Alu -5 307 1 183 322 147 63 chr4 111390389 111390472 -72898190 + L2 LINE L2 3169 3270 -2 584 238 92 24 chr4 111391441 111391605 -72897057 - MER5B DNA MER1_type 0 178 4 483 200 220 60 chr4 111392130 111392280 -72896382 + MER5A DNA MER1_type 15 188 -1 478 281 64 23 chr4 111393036 111393207 -72895455 - MER5A DNA MER1_type -5 184 7 1410 123 50 0 chr4 111393237 111393456 -72895206 + MER30 DNA MER1_type 1 230 0 1887 152 0 10 chr4 111393670 111393959 -72894703 + AluJb SINE Alu 24 309 -3 335 91 36 0 chr4 111394118 111394173 -72894489 + GA-rich Low_complexity Low_complexity 3 59 0 495 273 64 5 chr4 111394173 111394393 -72894269 + L1ME4a LINE L1 5665 5897 -224 308 280 33 13 chr4 111394426 111394576 -72894086 + L1ME4a LINE L1 5969 6121 0 181 317 83 17 chr4 111394601 111394661 -72894001 + L3b LINE CR1 1483 1546 -37 593 253 88 22 chr4 111395694 111395876 -72892786 - MIR SINE MIR -56 206 13 195 341 62 68 chr4 111396064 111396240 -72892422 - MIR3 SINE MIR -7 201 27 195 355 99 0 chr4 111396602 111396743 -72891919 + L2 LINE L2 3158 3312 -1 1920 157 0 0 chr4 111397027 111397326 -72891336 - AluSx SINE Alu -13 299 1 22 56 0 0 chr4 111398125 111398161 -72890501 + AT_rich Low_complexity Low_complexity 1 36 0 220 263 32 53 chr4 111398828 111398923 -72889739 + L2 LINE L2 3219 3311 -2 2120 129 3 0 chr4 111398939 111399234 -72889428 - AluSq SINE Alu -15 298 3 734 190 15 0 chr4 111399429 111399566 -72889096 - BC200 scRNA scRNA -61 139 1 28 0 0 0 chr4 111400186 111400214 -72888448 + AT_rich Low_complexity Low_complexity 1 28 0 783 21 0 0 chr4 111400214 111400307 -72888355 - L1PA3 LINE L1 -3 6152 6060 1544 173 35 21 chr4 111400313 111400602 -72888060 - AluJo SINE Alu -19 293 1 26 0 0 0 chr4 111400889 111400915 -72887747 + AT_rich Low_complexity Low_complexity 1 26 0 579 274 53 97 chr4 111401014 111401394 -72887268 - MLT1J1 LTR MaLR -20 426 64 2169 99 26 7 chr4 111402432 111402734 -72885928 - AluY SINE Alu -3 308 1 193 278 0 14 chr4 111402773 111402845 -72885817 + L3 LINE CR1 1203 1273 -304 21 0 0 0 chr4 111403256 111403277 -72885385 + AT_rich Low_complexity Low_complexity 1 21 0 1053 300 69 27 chr4 111403569 111403751 -72884911 - L2 LINE L2 0 3313 3140 207 100 0 0 chr4 111403751 111403781 -72884881 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 1053 300 69 27 chr4 111403781 111404078 -72884584 - L2 LINE L2 -173 3140 2814 426 359 86 43 chr4 111404092 111404510 -72884152 - L2 LINE L2 -32 3240 2805 26 30 0 0 chr4 111404811 111404844 -72883818 + AT_rich Low_complexity Low_complexity 1 33 0 270 143 0 0 chr4 111405902 111405944 -72882718 - MIR SINE MIR -67 141 100 289 203 31 0 chr4 111406063 111406127 -72882535 - MLT1J LTR MaLR 0 595 530 858 186 41 50 chr4 111406133 111406353 -72882309 - MLT1H LTR MaLR -259 290 73 2078 121 10 7 chr4 111406672 111406979 -72881683 + AluSp SINE Alu 1 308 -5 819 320 60 0 chr4 111407752 111408036 -72880626 + MER102a DNA MER1_type 25 325 -5 278 224 153 35 chr4 111408777 111408862 -72879800 - MIR SINE MIR -88 174 80 464 238 224 0 chr4 111409512 111409659 -72879003 + MER5A DNA MER1_type 10 189 0 184 337 79 11 chr4 111409659 111409747 -72878915 + MIR SINE MIR 37 130 -132 557 261 72 11 chr4 111409754 111409934 -72878728 + MIR SINE MIR 68 258 -4 214 277 202 21 chr4 111410087 111410181 -72878481 + MIR3 SINE MIR 6 116 -92 1806 134 81 3 chr4 111410483 111410767 -72877895 - AluSx SINE Alu -6 306 1 288 130 0 0 chr4 111411645 111411691 -72876971 + (TG)n Simple_repeat Simple_repeat 2 47 0 375 253 9 36 chr4 111411733 111411881 -72876781 - L1MA10 LINE L1 -6 6306 6169 21 57 0 0 chr4 111412804 111412839 -72875823 + AT_rich Low_complexity Low_complexity 1 35 0 1233 266 56 20 chr4 111413432 111413789 -72874873 - MLT1J LTR MaLR -36 475 106 249 108 0 0 chr4 111413824 111413861 -72874801 + (TTA)n Simple_repeat Simple_repeat 2 38 0 7945 217 42 19 chr4 111415141 111418225 -72870437 + L1MC2 LINE L1 2996 6158 -186 198 91 0 0 chr4 111418611 111418644 -72870018 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 931 316 214 19 chr4 111418707 111419838 -72868824 - L2 LINE L2 -96 3217 1883 24 0 0 0 chr4 111420151 111420175 -72868487 + AT_rich Low_complexity Low_complexity 1 24 0 2054 140 0 3 chr4 111421505 111421791 -72866871 + AluSx SINE Alu 1 285 -27 279 54 0 0 chr4 111421795 111421832 -72866830 + (CAA)n Simple_repeat Simple_repeat 2 38 0 25 31 0 0 chr4 111423104 111423136 -72865526 + AT_rich Low_complexity Low_complexity 1 32 0 2225 122 0 0 chr4 111424295 111424590 -72864072 - AluSx SINE Alu -17 295 1 234 300 191 18 chr4 111424822 111424932 -72863730 - MIR SINE MIR -43 219 91 342 239 102 36 chr4 111426731 111426898 -72861764 - L1MEd LINE L1 -5932 187 10 2516 99 25 6 chr4 111427112 111427466 -72861196 - THE1B LTR MaLR -2 362 2 287 238 113 0 chr4 111429004 111429084 -72859578 + L2 LINE L2 3204 3292 -21 343 119 30 0 chr4 111433728 111433795 -72854867 + (CAG)n Simple_repeat Simple_repeat 1 69 0 27 0 0 0 chr4 111435049 111435076 -72853586 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr4 111436997 111437021 -72851641 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 26 chr4 111437650 111437668 -72850994 + AT_rich Low_complexity Low_complexity 1 18 -19 1785 111 8 0 chr4 111437668 111437929 -72850733 - L1PA12 LINE L1 -2 6166 5904 27 0 0 26 chr4 111437929 111437948 -72850714 + AT_rich Low_complexity Low_complexity 18 37 0 24 32 0 0 chr4 111438121 111438152 -72850510 + AT_rich Low_complexity Low_complexity 1 31 0 495 263 200 16 chr4 111438188 111438378 -72850284 - MIR SINE MIR -12 250 26 40 0 0 0 chr4 111439971 111440011 -72848651 + AT_rich Low_complexity Low_complexity 1 40 0 241 231 68 120 chr4 111440732 111440849 -72847813 + MER5B DNA MER1_type 67 177 -1 693 154 0 31 chr4 111441918 111442048 -72846614 + FLAM_C SINE Alu 1 126 -7 219 269 285 15 chr4 111442596 111442726 -72845936 + MIR3 SINE MIR 40 204 -4 454 143 0 0 chr4 111444540 111444617 -72844045 - L1MA1 LINE L1 -6 6296 6220 248 352 56 0 chr4 111444829 111444937 -72843725 - L2 LINE L2 -627 2687 2574 304 261 123 113 chr4 111445233 111445436 -72843226 + MIR SINE MIR 9 213 -49 2192 93 0 3 chr4 111445560 111445850 -72842812 - AluSg SINE Alu -12 298 10 1205 229 219 30 chr4 111445850 111446325 -72842337 + L1MC4 LINE L1 6598 7162 -880 223 235 15 15 chr4 111449277 111449345 -72839317 + (TA)n Simple_repeat Simple_repeat 2 69 0 216 329 68 68 chr4 111450402 111450624 -72838038 - MIR SINE MIR -38 224 3 458 336 0 0 chr4 111450763 111450891 -72837771 - MIR SINE MIR -27 235 108 216 0 0 0 chr4 111451350 111451374 -72837288 + (T)n Simple_repeat Simple_repeat 1 24 0 252 77 0 0 chr4 111452578 111452617 -72836045 + (TG)n Simple_repeat Simple_repeat 2 40 0 231 358 63 0 chr4 111453175 111453270 -72835392 - L2 LINE L2 -2 3270 3170 1668 149 80 3 chr4 111453483 111453771 -72834891 + AluJb SINE Alu 2 311 -1 2011 105 8 4 chr4 111453951 111454217 -72834445 - AluSx SINE Alu -25 287 21 686 94 0 0 chr4 111454217 111454313 -72834349 - AluS SINE Alu -216 96 1 412 315 203 22 chr4 111454359 111454680 -72833982 - L2 LINE L2 -596 2718 2340 191 65 87 0 chr4 111454804 111454850 -72833812 + CT-rich Low_complexity Low_complexity 3 52 0 186 244 22 0 chr4 111456873 111456918 -72831744 - L2 LINE L2 -6 3307 3262 2116 119 3 0 chr4 111457876 111458169 -72830493 + AluSq SINE Alu 1 294 -19 307 329 67 18 chr4 111458626 111458790 -72829872 - MIR3 SINE MIR -3 205 34 29 0 0 0 chr4 111461582 111461611 -72827051 + AT_rich Low_complexity Low_complexity 1 29 0 44 20 0 0 chr4 111461888 111461939 -72826723 + AT_rich Low_complexity Low_complexity 1 51 0 242 123 18 0 chr4 111461966 111462023 -72826639 + (TA)n Simple_repeat Simple_repeat 1 58 0 40 37 0 0 chr4 111463736 111463790 -72824872 + AT_rich Low_complexity Low_complexity 1 54 0 200 306 212 0 chr4 111465812 111465897 -72822765 - L2 LINE L2 -6 3266 3164 290 292 32 173 chr4 111465948 111466417 -72822245 - L2 LINE L2 -382 2932 2530 1923 154 6 6 chr4 111466772 111467084 -72821578 + AluJb SINE Alu 1 312 0 210 274 0 0 chr4 111468145 111468196 -72820466 + L2 LINE L2 3263 3313 0 1980 174 88 29 chr4 111468425 111468833 -72819829 - MSTB1 LTR MaLR 0 432 1 1940 145 10 10 chr4 111468963 111469274 -72819388 + AluJb SINE Alu 1 311 -1 1285 225 23 0 chr4 111469827 111470089 -72818573 + AluJb SINE Alu 24 291 -21 477 305 15 70 chr4 111470901 111471101 -72817561 + MER5A DNA MER1_type 1 189 0 24 0 0 0 chr4 111471791 111471815 -72816847 + AT_rich Low_complexity Low_complexity 1 24 0 259 355 28 0 chr4 111472272 111472379 -72816283 - MIR SINE MIR 0 262 153 457 265 164 26 chr4 111472388 111472577 -72816085 - MIR SINE MIR -14 248 34 385 295 70 56 chr4 111473203 111473548 -72815114 + L1ME4a LINE L1 5601 5955 -166 1875 143 31 3 chr4 111473548 111473842 -72814820 - AluSq SINE Alu -11 302 1 385 295 70 56 chr4 111473842 111473940 -72814722 + L1ME4a LINE L1 5955 6050 -71 203 0 37 0 chr4 111473960 111473987 -72814675 + (TA)n Simple_repeat Simple_repeat 1 28 0 315 0 0 0 chr4 111476371 111476406 -72812256 + (CA)n Simple_repeat Simple_repeat 1 35 0 2157 99 3 43 chr4 111476775 111477097 -72811565 - AluSx SINE Alu -3 309 1 792 153 0 8 chr4 111477422 111477540 -72811122 - FLAM_C SINE Alu -15 118 2 324 354 53 0 chr4 111477812 111477925 -72810737 - L2 LINE L2 -29 3243 3125 372 94 0 0 chr4 111478871 111478924 -72809738 + (TG)n Simple_repeat Simple_repeat 1 53 0 180 0 0 0 chr4 111479907 111479927 -72808735 + (T)n Simple_repeat Simple_repeat 1 20 0 380 346 9 0 chr4 111479937 111480044 -72808618 + L2 LINE L2 3153 3260 -12 2461 77 3 0 chr4 111480658 111480968 -72807694 + AluSp SINE Alu 1 311 -2 1108 163 4 104 chr4 111480976 111481246 -72807416 - L1MB8 LINE L1 -9 6169 5927 423 69 0 0 chr4 111481293 111481351 -72807311 + AluJ/FLAM SINE Alu 1 58 -254 219 204 0 0 chr4 111483598 111483647 -72805015 + (TA)n Simple_repeat Simple_repeat 2 50 0 299 274 0 0 chr4 111484410 111484472 -72804190 - AluJo SINE Alu -156 146 85 2074 115 10 3 chr4 111484479 111484775 -72803887 - AluSq SINE Alu -15 298 1 1131 212 105 38 chr4 111484800 111485144 -72803518 - L1ME3A LINE L1 -9 6161 5795 483 299 75 25 chr4 111489545 111489786 -72798876 + MIR SINE MIR 6 258 -4 189 279 39 85 chr4 111490387 111490516 -72798146 - L3b LINE CR1 -87 1496 1374 224 316 60 23 chr4 111492749 111492882 -72795780 + L2 LINE L2 2619 2756 -558 1430 213 82 39 chr4 111493075 111493512 -72795150 + LTR40c LTR ERVL 1 456 -9 231 61 0 0 chr4 111493783 111493816 -72794846 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 3595 41 0 2 chr4 111493816 111494254 -72794408 - L1PA5 LINE L1 -11 6143 5707 2216 35 0 4 chr4 111494296 111494555 -72794107 - AluY SINE Alu -53 258 1 970 115 6 98 chr4 111495276 111495459 -72793203 + FRAM SINE Alu 1 166 -10 2239 105 0 13 chr4 111495461 111495765 -72792897 + AluSx SINE Alu 1 300 -12 313 309 60 20 chr4 111495882 111496031 -72792631 - MIR SINE MIR -27 235 81 453 311 83 10 chr4 111497405 111497598 -72791064 + MIR SINE MIR 55 261 -1 6863 268 125 29 chr4 111498607 111501568 -72787094 - L2 LINE L2 -1 3312 60 6988 50 14 2 chr4 111501892 111503142 -72785520 - L1PA7 LINE L1 -8 6146 4896 3965 66 4 0 chr4 111503142 111503645 -72785017 + L1P3 LINE L1 872 1376 -5085 452 59 15 0 chr4 111503736 111503804 -72784858 + (TC)n Simple_repeat Simple_repeat 2 70 0 204 233 0 0 chr4 111504958 111505001 -72783661 + L2 LINE L2 3269 3311 -2 230 303 40 13 chr4 111505005 111505081 -72783581 + MIR SINE MIR 83 160 -102 269 332 66 66 chr4 111506134 111506345 -72782317 - L2 LINE L2 -3 3269 3059 27 0 0 0 chr4 111506512 111506539 -72782123 + AT_rich Low_complexity Low_complexity 1 27 0 228 125 0 25 chr4 111507317 111507392 -72781270 - AluJo SINE Alu 0 318 245 1219 126 5 32 chr4 111507392 111507582 -72781080 - AluJo SINE Alu -124 188 4 303 214 24 36 chr4 111507917 111508001 -72780661 + MIR SINE MIR 180 262 0 2138 109 0 17 chr4 111508233 111508527 -72780135 + AluSq SINE Alu 1 289 -24 760 91 0 41 chr4 111509236 111509357 -72779305 - L1PA8 LINE L1 -2 6170 6055 315 256 99 73 chr4 111509522 111509713 -72778949 + MER112 DNA MER1_type 65 260 0 356 276 37 45 chr4 111509733 111509867 -72778795 + MIR SINE MIR 20 152 -110 24 0 0 0 chr4 111510093 111510117 -72778545 + AT_rich Low_complexity Low_complexity 1 24 0 202 324 15 29 chr4 111511286 111511354 -72777308 + L2 LINE L2 3206 3272 0 221 265 0 0 chr4 111511906 111511955 -72776707 + L2 LINE L2 3258 3306 -7 185 306 102 37 chr4 111512804 111512912 -72775750 - MIR SINE MIR -28 234 120 1495 167 66 28 chr4 111513700 111513987 -72774675 - AluJo SINE Alu -9 303 6 248 289 80 27 chr4 111514476 111514663 -72773999 - MARNA DNA Mariner -106 480 284 428 206 0 43 chr4 111515062 111515154 -72773508 + FRAM/FAM SINE Alu 1 87 -89 444 113 42 0 chr4 111515156 111515227 -72773435 - L1P4 LINE L1 -653 5515 5442 300 340 182 6 chr4 111515355 111515514 -72773148 - MIR3 SINE MIR -1 207 21 26 74 0 0 chr4 111516759 111516813 -72771849 + AT_rich Low_complexity Low_complexity 1 54 0 2644 138 75 11 chr4 111517523 111517979 -72770683 - L1PA16 LINE L1 -2 6164 5680 1890 81 0 0 chr4 111517979 111518225 -72770437 + L1PA6 LINE L1 5908 6154 0 428 127 0 220 chr4 111518226 111518376 -72770286 - L1PA16 LINE L1 -464 5692 5576 924 202 23 0 chr4 111518419 111518592 -72770070 - MER5A DNA MER1_type 0 189 13 27 29 0 0 chr4 111519331 111519365 -72769297 + AT_rich Low_complexity Low_complexity 1 34 0 317 293 41 16 chr4 111520076 111520199 -72768463 + LTR67 LTR ERVL 341 466 -91 26 64 0 0 chr4 111521695 111521742 -72766920 + AT_rich Low_complexity Low_complexity 1 47 0 2634 40 0 3 chr4 111522129 111522433 -72766229 + AluY SINE Alu 1 303 -8 237 196 0 0 chr4 111523105 111523156 -72765506 + (CA)n Simple_repeat Simple_repeat 2 52 0 2665 91 24 11 chr4 111523262 111523634 -72765028 - L1PA10 LINE L1 -5 6163 5787 2175 120 0 0 chr4 111523917 111524208 -72764454 + AluSx SINE Alu 1 291 -21 186 43 0 0 chr4 111524281 111524304 -72764358 + (CA)n Simple_repeat Simple_repeat 1 23 0 26 88 0 0 chr4 111524322 111524390 -72764272 + AT_rich Low_complexity Low_complexity 1 68 0 201 121 0 0 chr4 111524862 111524895 -72763767 + (A)n Simple_repeat Simple_repeat 1 33 0 344 322 56 65 chr4 111525174 111525603 -72763059 - L2 LINE L2 -436 2878 2454 1803 183 3 3 chr4 111525666 111525967 -72762695 - AluJo SINE Alu 0 312 12 2995 116 91 34 chr4 111526139 111526666 -72761996 - LTR49 LTR ERV1 0 595 33 4852 131 43 3 chr4 111526666 111527417 -72761245 - LTR39 LTR ERV1 0 783 3 2995 116 91 34 chr4 111527417 111527452 -72761210 - LTR49 LTR ERV1 -562 33 1 851 282 43 20 chr4 111527685 111527940 -72760722 + MIR SINE MIR 2 262 0 206 274 107 12 chr4 111528838 111528922 -72759740 - MIR3 SINE MIR -25 183 92 180 192 192 0 chr4 111529264 111529316 -72759346 - MIR SINE MIR -109 153 92 560 254 48 75 chr4 111529713 111529981 -72758681 + MIR SINE MIR 2 262 0 22 0 0 0 chr4 111530851 111530873 -72757789 + AT_rich Low_complexity Low_complexity 1 22 0 234 320 54 14 chr4 111530982 111531129 -72757533 + L1M4 LINE L1 4056 4208 -1938 27 0 0 0 chr4 111531129 111531156 -72757506 + AT_rich Low_complexity Low_complexity 1 27 0 24 53 0 0 chr4 111531662 111531700 -72756962 + AT_rich Low_complexity Low_complexity 1 38 0 590 234 133 0 chr4 111532415 111532573 -72756089 + MIR SINE MIR 76 254 -8 256 288 17 0 chr4 111532860 111532919 -72755743 - L2 LINE L2 -17 3296 3237 1572 154 84 44 chr4 111534663 111534961 -72753701 - MER1B DNA MER1_type -24 315 6 21 0 0 0 chr4 111536015 111536036 -72752626 + AT_rich Low_complexity Low_complexity 1 21 0 44 26 0 39 chr4 111536525 111536602 -72752060 + AT_rich Low_complexity Low_complexity 1 74 0 243 332 44 70 chr4 111537374 111537603 -72751059 - MLT1K LTR MaLR -346 242 20 23 54 0 0 chr4 111537662 111537699 -72750963 + AT_rich Low_complexity Low_complexity 1 37 0 240 338 39 39 chr4 111538026 111538180 -72750482 - L2 LINE L2 -1 3312 3159 2284 100 3 0 chr4 111538553 111538854 -72749808 + AluSx SINE Alu 1 302 -10 220 374 38 8 chr4 111538910 111539041 -72749621 - L2 LINE L2 -605 2709 2575 419 300 100 30 chr4 111539134 111539334 -72749328 + MIR SINE MIR 2 215 -47 707 181 0 0 chr4 111539567 111539694 -72748968 - AluSg/x SINE Alu -7 305 179 225 280 178 17 chr4 111539748 111539866 -72748796 + MIR SINE MIR 20 156 -106 1724 246 81 33 chr4 111540890 111541431 -72747231 - MLT1F1 LTR MaLR 0 567 1 309 264 28 0 chr4 111541465 111541537 -72747125 - L2 LINE L2 0 3313 3240 190 241 121 36 chr4 111541642 111541725 -72746937 + MIR SINE MIR 59 148 -114 180 0 0 0 chr4 111542052 111542072 -72746590 + (T)n Simple_repeat Simple_repeat 1 20 0 280 360 81 22 chr4 111543773 111543909 -72744753 + L2 LINE L2 3125 3268 -4 217 328 23 82 chr4 111544454 111544625 -72744037 + L2 LINE L2 2579 2739 -575 303 339 8 23 chr4 111544687 111544817 -72743845 - MER5B DNA MER1_type -44 134 7 258 232 131 10 chr4 111544881 111544980 -72743682 + MIR SINE MIR 44 154 -108 310 254 15 0 chr4 111545041 111545108 -72743554 + MER94 DNA DNA 54 121 -13 3799 72 4 6 chr4 111545367 111545884 -72742778 - L1PB1 LINE L1 -2 6149 5634 579 306 85 38 chr4 111545937 111546299 -72742363 - MER115 DNA AcHobo -3 4028 3684 1905 196 130 0 chr4 111546299 111546744 -72741918 - MLT1D LTR MaLR 0 505 3 579 306 85 38 chr4 111546744 111546845 -72741817 - MER115 DNA AcHobo -347 3684 187 254 206 14 41 chr4 111546912 111546985 -72741677 - MER115 DNA AcHobo -620 73 3 1173 65 0 0 chr4 111547564 111547703 -72740959 + AluSg/x SINE Alu 155 293 -17 281 252 25 59 chr4 111548005 111548124 -72740538 + L2 LINE L2 3156 3270 -2 2529 77 0 6 chr4 111548216 111548527 -72740135 - AluSg SINE Alu -1 309 1 2220 93 14 0 chr4 111548784 111549075 -72739587 - AluSg SINE Alu -15 295 1 2860 3 0 3 chr4 111550275 111550610 -72738052 - AluYa5 SINE Alu 0 334 1 1457 115 0 32 chr4 111552693 111552911 -72735751 - AluSx SINE Alu -101 211 1 2358 62 10 0 chr4 111552923 111553213 -72735449 - AluY SINE Alu -18 293 1 21 0 0 0 chr4 111553345 111553366 -72735296 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr4 111557406 111557441 -72731221 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr4 111558386 111558409 -72730253 + AT_rich Low_complexity Low_complexity 1 23 0 1850 167 0 7 chr4 111558527 111558815 -72729847 - AluJo SINE Alu -26 286 1 451 307 147 0 chr4 111559996 111560159 -72728503 + MIR SINE MIR 1 187 -75 341 277 99 0 chr4 111561401 111561502 -72727160 - L2 LINE L2 0 3313 3203 676 258 0 36 chr4 111561590 111561757 -72726905 + MER63A DNA MER1_type 46 206 -4 3367 74 7 0 chr4 111561795 111562242 -72726420 - L1PA7 LINE L1 -2 6152 5703 2320 139 24 16 chr4 111562533 111562922 -72725740 - THE1C LTR MaLR 0 375 1 2177 94 31 3 chr4 111562983 111563271 -72725391 - AluSp SINE Alu -17 296 1 189 0 0 0 chr4 111563301 111563322 -72725340 + (TTG)n Simple_repeat Simple_repeat 1 21 0 345 236 5 161 chr4 111563951 111564150 -72724512 - MIR SINE MIR -32 230 63 408 263 91 55 chr4 111565343 111565617 -72723045 - LTR33 LTR ERVL -2 519 236 748 199 0 0 chr4 111565658 111565799 -72722863 - LTR33 LTR ERVL -380 141 1 217 274 0 16 chr4 111566688 111566750 -72721912 + CT-rich Low_complexity Low_complexity 2 62 0 251 297 13 81 chr4 111568553 111568651 -72720011 - L2 LINE L2 0 3313 3210 2576 65 0 0 chr4 111568651 111568957 -72719705 - AluY SINE Alu -5 306 1 251 297 13 81 chr4 111568957 111569094 -72719568 - L2 LINE L2 -103 3210 3094 1132 251 317 33 chr4 111569104 111569153 -72719509 + L2 LINE L2 447 481 -2833 1882 122 47 101 chr4 111569153 111569538 -72719124 - THE1B LTR MaLR 0 364 1 1132 251 317 33 chr4 111569538 111570306 -72718356 + L2 LINE L2 481 1496 -1818 2273 300 105 23 chr4 111570309 111571562 -72717100 + L2 LINE L2 1955 3312 -1 21 0 0 0 chr4 111574393 111574414 -72714248 + AT_rich Low_complexity Low_complexity 1 21 0 203 152 0 0 chr4 111575644 111575677 -72712985 + (TG)n Simple_repeat Simple_repeat 2 34 0 195 42 0 0 chr4 111576978 111577002 -72711660 + (T)n Simple_repeat Simple_repeat 1 24 0 232 197 16 0 chr4 111577044 111577105 -72711557 + (CAAA)n Simple_repeat Simple_repeat 2 63 0 24 32 0 0 chr4 111577451 111577482 -72711180 + AT_rich Low_complexity Low_complexity 1 31 0 882 131 86 6 chr4 111577734 111577909 -72710753 - MER53 DNA DNA 0 189 1 1024 137 7 0 chr4 111579082 111579228 -72709434 + AluSq SINE Alu 137 283 -30 1443 199 61 4 chr4 111579406 111579568 -72709094 - AluJo SINE Alu -17 295 109 189 0 0 0 chr4 111579568 111579589 -72709073 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 1443 199 61 4 chr4 111579589 111579703 -72708959 - AluJo SINE Alu -203 109 3 1293 191 105 32 chr4 111579749 111580063 -72708599 - MER2 DNA MER2_type -8 337 1 2368 92 0 0 chr4 111580084 111580387 -72708275 + AluSg SINE Alu 2 304 -6 1326 107 0 0 chr4 111581735 111581912 -72706750 + AluSp SINE Alu 121 297 -16 14743 93 4 2 chr4 111583141 111583772 -72704890 - L1PA7 LINE L1 -8 6461 5833 2238 106 3 0 chr4 111583772 111584064 -72704598 + AluSp SINE Alu 2 294 -19 14743 93 4 2 chr4 111584064 111586281 -72702381 - L1PA7 LINE L1 -636 5833 3612 4648 95 5 0 chr4 111586281 111586914 -72701748 - L1PA7 LINE L1 -5825 636 1 283 195 24 61 chr4 111586927 111587009 -72701653 + MIR3 SINE MIR 127 205 -3 23 33 0 0 chr4 111587586 111587616 -72701046 + AT_rich Low_complexity Low_complexity 1 30 0 271 338 0 0 chr4 111587931 111587999 -72700663 - MER5A DNA MER1_type -118 71 4 255 103 0 0 chr4 111588640 111588679 -72699983 + (CA)n Simple_repeat Simple_repeat 1 39 0 36 40 0 0 chr4 111590114 111590164 -72698498 + AT_rich Low_complexity Low_complexity 1 50 0 184 307 102 47 chr4 111590324 111590451 -72698211 + MIR SINE MIR 21 154 -108 2466 73 0 0 chr4 111593113 111593416 -72695246 - AluY SINE Alu -8 303 1 721 271 81 29 chr4 111596502 111596712 -72691950 - MIR SINE MIR -30 232 12 28 29 0 0 chr4 111596792 111596827 -72691835 + AT_rich Low_complexity Low_complexity 1 35 0 261 169 22 11 chr4 111596856 111596945 -72691717 + (TA)n Simple_repeat Simple_repeat 2 91 0 1675 173 3 7 chr4 111598444 111598733 -72689929 + AluJb SINE Alu 14 301 -11 185 277 15 46 chr4 111599037 111599102 -72689560 + L3 LINE CR1 885 947 -630 465 246 69 8 chr4 111599103 111599233 -72689429 + L2 LINE L2 3167 3304 -9 814 331 89 17 chr4 111599264 111599669 -72688993 + L3 LINE CR1 993 1426 -151 26 30 0 0 chr4 111600738 111600771 -72687891 + AT_rich Low_complexity Low_complexity 1 33 0 231 274 0 0 chr4 111600775 111600848 -72687814 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 21 0 0 0 chr4 111601643 111601664 -72686998 + AT_rich Low_complexity Low_complexity 1 21 0 3114 137 38 27 chr4 111602327 111602875 -72685787 - MER21A LTR ERV1 -2 929 376 1215 154 32 32 chr4 111602880 111603126 -72685536 - MER21A LTR ERV1 -667 264 19 355 220 90 60 chr4 111603944 111604044 -72684618 + L2 LINE L2 3191 3293 -20 1885 148 26 10 chr4 111606381 111606686 -72681976 - AluJo SINE Alu -2 310 1 26 88 0 0 chr4 111606871 111606939 -72681723 + AT_rich Low_complexity Low_complexity 1 68 0 189 0 0 0 chr4 111607811 111607832 -72680830 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 253 176 91 18 chr4 111607940 111608023 -72680639 - MIR SINE MIR -65 143 51 27 92 0 0 chr4 111608219 111608295 -72680367 + AT_rich Low_complexity Low_complexity 1 76 0 222 250 0 0 chr4 111608305 111608353 -72680309 + L2 LINE L2 3224 3271 -1 223 306 16 0 chr4 111608979 111609041 -72679621 + MIR SINE MIR 87 149 -113 215 128 0 26 chr4 111610572 111610611 -72678051 + (TC)n Simple_repeat Simple_repeat 2 39 0 237 325 48 0 chr4 111612330 111612413 -72676249 - L2 LINE L2 0 3313 3227 221 352 0 14 chr4 111613248 111613319 -72675343 - MIR SINE MIR -191 71 2 25 51 0 0 chr4 111614119 111614158 -72674504 + AT_rich Low_complexity Low_complexity 1 39 0 812 155 52 0 chr4 111614255 111614410 -72674252 + L1MA4 LINE L1 5999 6161 -139 268 143 0 0 chr4 111614428 111614470 -72674192 - Alu SINE Alu -252 50 9 696 153 46 0 chr4 111614607 111614738 -72673924 + L1MA3 LINE L1 6169 6305 0 1343 151 102 56 chr4 111614955 111615239 -72673423 - AluJb SINE Alu -7 305 9 23 54 0 0 chr4 111615419 111615456 -72673206 + AT_rich Low_complexity Low_complexity 1 37 0 196 265 0 0 chr4 111616110 111616159 -72672503 - L2 LINE L2 -1 3312 3264 2141 123 0 0 chr4 111616598 111616899 -72671763 + AluSq SINE Alu 1 301 -12 576 289 5 64 chr4 111616992 111617179 -72671483 - MER5B DNA MER1_type -1 177 2 39 50 0 0 chr4 111617210 111617270 -72671392 + AT_rich Low_complexity Low_complexity 1 60 0 246 315 182 33 chr4 111617792 111617973 -72670689 - L2 LINE L2 -211 3061 2854 2210 104 49 32 chr4 111618493 111618554 -72670108 - L1MA8 LINE L1 -2 6289 6231 315 0 0 0 chr4 111618554 111618589 -72670073 + (CA)n Simple_repeat Simple_repeat 2 36 0 2210 104 49 32 chr4 111618589 111618932 -72669730 - L1MA8 LINE L1 -60 6231 5878 233 320 53 0 chr4 111618947 111619022 -72669640 + L2 LINE L2 3235 3313 0 841 288 40 8 chr4 111619095 111619345 -72669317 - MIR SINE MIR -1 261 4 21 89 0 0 chr4 111622079 111622135 -72666527 + AT_rich Low_complexity Low_complexity 1 56 0 2823 0 0 0 chr4 111622234 111622535 -72666127 + AluYa5 SINE Alu 1 301 -10 23 33 0 0 chr4 111622594 111622624 -72666038 + AT_rich Low_complexity Low_complexity 1 30 0 380 204 39 171 chr4 111623804 111623985 -72664677 - MIR SINE MIR -58 204 48 1909 121 48 3 chr4 111624588 111624878 -72663784 - AluSx SINE Alu -9 303 1 422 329 186 20 chr4 111625413 111625805 -72662857 - L2 LINE L2 -868 2446 1990 1783 149 14 18 chr4 111626669 111626995 -72661667 - AluJo SINE Alu 0 325 1 2248 110 3 0 chr4 111627600 111627892 -72660770 - AluSx SINE Alu -19 293 1 427 293 126 0 chr4 111628655 111628822 -72659840 - MIR SINE MIR -12 250 63 672 147 7 77 chr4 111629325 111629468 -72659194 + FLAM_A SINE Alu 1 133 0 238 310 149 6 chr4 111629792 111629966 -72658696 - L2 LINE L2 -228 3044 2846 2551 52 7 3 chr4 111632795 111633101 -72655561 + AluY SINE Alu 3 309 -2 21 0 0 0 chr4 111635248 111635269 -72653393 + AT_rich Low_complexity Low_complexity 1 21 0 41 48 0 0 chr4 111636546 111636608 -72652054 + AT_rich Low_complexity Low_complexity 1 62 0 428 180 133 78 chr4 111637488 111637548 -72651114 + MER5B DNA MER1_type 4 59 -119 2146 125 0 10 chr4 111637548 111637861 -72650801 + AluSg SINE Alu 1 310 0 428 180 133 78 chr4 111637861 111637928 -72650734 + MER5B DNA MER1_type 59 138 -40 574 280 89 17 chr4 111638217 111638453 -72650209 + MIR SINE MIR 8 260 -2 1968 128 7 4 chr4 111638927 111639208 -72649454 - AluSx SINE Alu -30 282 1 237 137 20 0 chr4 111639893 111639944 -72648718 + L1MC1 LINE L1 6282 6333 0 550 324 7 0 chr4 111642551 111642699 -72645963 - MIR3 SINE MIR -12 196 48 223 278 0 0 chr4 111642803 111642857 -72645805 + MIR SINE MIR 203 256 -6 220 205 0 51 chr4 111643708 111643786 -72644876 + CT-rich Low_complexity Low_complexity 2 75 0 1671 185 7 14 chr4 111643896 111644193 -72644469 + AluJo SINE Alu 1 295 -17 315 311 0 42 chr4 111644713 111644832 -72643830 - L2 LINE L2 0 3313 3200 245 371 57 9 chr4 111644930 111645035 -72643627 + L2 LINE L2 3154 3263 -9 21 0 0 0 chr4 111647208 111647229 -72641433 + AT_rich Low_complexity Low_complexity 1 21 0 228 169 34 34 chr4 111650075 111650134 -72638528 + L1M2b LINE L1 1700 1758 -5451 354 45 0 0 chr4 111650464 111650508 -72638154 + (TG)n Simple_repeat Simple_repeat 2 45 0 1820 102 99 0 chr4 111651386 111651670 -72636992 + AluSx SINE Alu 1 312 0 459 250 120 37 chr4 111651744 111651960 -72636702 - Charlie8 DNA MER1_type -2144 273 40 22 56 0 0 chr4 111652345 111652381 -72636281 + AT_rich Low_complexity Low_complexity 1 36 0 445 325 75 5 chr4 111652653 111652841 -72635821 - MIR SINE MIR -23 239 39 271 313 122 15 chr4 111652882 111653013 -72635649 - L2 LINE L2 -8 3305 3161 21 0 0 0 chr4 111653377 111653398 -72635264 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 111654058 111654082 -72634580 + AT_rich Low_complexity Low_complexity 1 24 0 287 323 0 0 chr4 111654940 111655036 -72633626 + A-rich Low_complexity Low_complexity 1 96 0 1283 157 0 20 chr4 111656615 111656819 -72631843 + AluJb SINE Alu 97 296 -16 319 194 28 0 chr4 111656819 111656891 -72631771 + Charlie1 DNA MER1_type 167 240 -2521 * 531 213 37 15 chr4 111656876 111657012 -72631650 + Charlie1 DNA MER1_type 2623 2761 0 415 113 25 12 chr4 111657171 111657251 -72631411 + CT-rich Low_complexity Low_complexity 4 84 0 1100 85 11 11 chr4 111657257 111657434 -72631228 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 253 315 110 31 chr4 111657849 111657976 -72630686 + MIR3 SINE MIR 4 140 -68 412 257 95 42 chr4 111658010 111658294 -72630368 + L1ME4a LINE L1 5619 5917 -204 469 283 64 12 chr4 111660535 111660708 -72627954 + MLT1L LTR MaLR 429 610 -5 3648 263 173 23 chr4 111660871 111661922 -72626740 - L2 LINE L2 0 3313 2421 618 233 31 0 chr4 111661922 111662051 -72626611 + FLAM_A SINE Alu 1 133 0 3648 263 173 23 chr4 111662051 111662936 -72625726 - L2 LINE L2 -892 2421 1065 432 268 25 9 chr4 111663801 111664099 -72624563 + (TTAA)n Simple_repeat Simple_repeat 1 302 0 439 329 107 9 chr4 111666218 111666434 -72622228 - MIR SINE MIR -3 259 23 40 49 0 0 chr4 111667309 111667370 -72621292 + AT_rich Low_complexity Low_complexity 1 61 0 324 313 52 83 chr4 111667416 111667646 -72621016 - L3b LINE CR1 -105 1478 1256 2601 59 0 0 chr4 111667823 111668128 -72620534 - AluY SINE Alu -6 305 1 250 216 81 81 chr4 111669144 111669255 -72619407 - MIR SINE MIR -48 214 104 291 333 114 0 chr4 111669328 111669433 -72619229 + 7SLRNA srpRNA srpRNA 1 117 -203 1952 115 14 14 chr4 111669690 111670021 -72618641 + AluJb SINE Alu 1 331 0 424 70 0 0 chr4 111670087 111670158 -72618504 + Alu SINE Alu 242 312 0 295 297 23 31 chr4 111670736 111670864 -72617798 + CT-rich Low_complexity Low_complexity 1 127 0 22 0 0 0 chr4 111671206 111671228 -72617434 + AT_rich Low_complexity Low_complexity 1 22 0 2321 91 3 0 chr4 111671698 111671994 -72616668 + AluSx SINE Alu 1 297 -15 3755 157 53 87 chr4 111673485 111674386 -72614276 + L1MB4 LINE L1 5302 6172 -8 727 303 143 41 chr4 111674487 111674610 -72614052 - L2 LINE L2 -1570 1744 1635 2094 128 17 0 chr4 111674610 111674906 -72613756 + AluSx SINE Alu 1 301 -11 727 303 143 41 chr4 111674906 111675349 -72613313 - L2 LINE L2 -1679 1635 1120 229 355 14 101 chr4 111675400 111675785 -72612877 - L2 LINE L2 -239 3033 2678 1962 181 103 37 chr4 111675836 111676300 -72612362 + MLT1D LTR MaLR 1 495 -10 216 266 62 31 chr4 111676303 111676367 -72612295 - L2 LINE L2 -680 2634 2569 483 286 68 45 chr4 111676529 111676891 -72611771 + MLT1J2 LTR MaLR 64 413 -37 845 273 34 30 chr4 111677487 111677784 -72610878 - MER110 LTR ERV1 -27 464 167 502 273 59 48 chr4 111678351 111678690 -72609972 + MLT1J2 LTR MaLR 64 450 0 387 0 0 0 chr4 111680078 111680121 -72608541 + (CA)n Simple_repeat Simple_repeat 2 44 0 315 49 0 0 chr4 111681126 111681167 -72607495 + (TC)n Simple_repeat Simple_repeat 2 42 0 818 294 89 15 chr4 111681863 111682200 -72606462 - LTR16A LTR ERVL -76 374 13 2409 171 43 14 chr4 111682245 111682735 -72605927 + L1MB8 LINE L1 5666 6169 -9 231 191 0 0 chr4 111682803 111682845 -72605817 + (CAT)n Simple_repeat Simple_repeat 2 43 0 320 310 192 10 chr4 111682845 111683048 -72605614 - MIR SINE MIR -1 261 22 2171 123 10 0 chr4 111683357 111683666 -72604996 - AluSx SINE Alu 0 312 1 21 0 0 0 chr4 111684099 111684120 -72604542 + AT_rich Low_complexity Low_complexity 1 21 0 1681 210 53 38 chr4 111684197 111684726 -72603936 + L1M4 LINE L1 3246 3782 -2364 3104 248 60 12 chr4 111684772 111685668 -72602994 - L1MEc LINE L1 -5409 987 49 1719 110 34 0 chr4 111686022 111686285 -72602377 - AluSq SINE Alu -5 308 37 1305 180 70 11 chr4 111686386 111686670 -72601992 + L1MB4 LINE L1 5874 6174 -6 1204 134 85 16 chr4 111686682 111686929 -72601733 + L1MA9 LINE L1 6048 6311 -1 304 93 0 0 chr4 111687307 111687350 -72601312 - MADE1 DNA Mariner -37 43 1 605 184 0 0 chr4 111687781 111687879 -72600783 + FLAM_A SINE Alu 5 102 -40 38 39 0 0 chr4 111688435 111688487 -72600175 + AT_rich Low_complexity Low_complexity 1 52 0 905 133 0 15 chr4 111688897 111689032 -72599630 + FLAM_C SINE Alu 1 133 0 193 114 0 0 chr4 111689646 111689681 -72598981 + MIR SINE MIR 100 134 -128 619 269 20 0 chr4 111689890 111690039 -72598623 + Charlie1 DNA MER1_type 91 242 -2519 539 223 23 15 chr4 111690031 111690161 -72598501 + Charlie1 DNA MER1_type 2631 2761 0 * 217 259 83 65 chr4 111690261 111690369 -72598293 - MIR SINE MIR -48 214 105 22 0 0 0 chr4 111690603 111690625 -72598037 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr4 111691566 111691608 -72597054 + AT_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr4 111692666 111692692 -72595970 + AT_rich Low_complexity Low_complexity 1 26 0 498 237 103 10 chr4 111703335 111703568 -72585094 - L1ME LINE L1 -297 5824 5559 190 27 0 81 chr4 111703633 111703670 -72584992 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1676 187 0 21 chr4 111703673 111703957 -72584705 - AluJo SINE Alu -30 282 5 3994 171 12 6 chr4 111704793 111705524 -72583138 + MER6 DNA MER2_type 1 736 -129 723 217 21 21 chr4 111705856 111706045 -72582617 + MER53 DNA DNA 1 189 0 419 35 18 0 chr4 111706400 111706457 -72582205 + (TG)n Simple_repeat Simple_repeat 1 58 0 188 294 261 37 chr4 111706532 111706858 -72581804 + L2 LINE L2 605 1003 -2311 1566 291 90 44 chr4 111706889 111708155 -72580507 + L2 LINE L2 1294 3313 0 280 292 34 0 chr4 111708171 111708260 -72580402 + L2 LINE L2 2721 2812 -502 * 364 333 0 0 chr4 111708256 111708373 -72580289 + MIR SINE MIR 146 262 0 274 258 11 54 chr4 111709281 111709374 -72579288 + MIR SINE MIR 84 172 -90 2387 77 7 3 chr4 111711688 111711987 -72576675 + AluY SINE Alu 1 300 -11 266 292 99 53 chr4 111712002 111712173 -72576489 + MER5A DNA MER1_type 7 185 -4 187 155 0 35 chr4 111712176 111712234 -72576428 + (TTAAA)n Simple_repeat Simple_repeat 1 56 0 21 0 0 0 chr4 111712928 111712949 -72575713 + AT_rich Low_complexity Low_complexity 1 21 0 2224 110 3 0 chr4 111715142 111715433 -72573229 - AluSx SINE Alu -19 293 2 306 311 10 19 chr4 111716323 111716426 -72572236 + MER5B DNA MER1_type 7 108 -70 2605 64 0 0 chr4 111716654 111716965 -72571697 + AluY SINE Alu 1 311 0 282 264 174 47 chr4 111716981 111717193 -72571469 + MER46C DNA MER2_type 1 239 -99 5333 191 63 78 chr4 111717193 111717211 -72571451 - Tigger3b DNA MER2_type -1797 1231 1214 893 79 94 0 chr4 111717211 111717338 -72571324 + MER85 DNA T2_type 1 139 0 5333 191 63 78 chr4 111717338 111718568 -72570094 - Tigger3b DNA MER2_type -1814 1214 1 454 151 9 85 chr4 111718568 111718670 -72569992 + MER46C DNA MER2_type 245 338 0 264 326 51 29 chr4 111720384 111720522 -72568140 - MIR3 SINE MIR -6 202 62 185 344 112 48 chr4 111721109 111721234 -72567428 + MIR SINE MIR 4 136 -126 495 55 14 0 chr4 111721316 111721389 -72567273 + MER41B LTR ERV1 481 554 -81 2146 121 0 3 chr4 111721512 111721802 -72566860 + AluSx SINE Alu 1 289 -23 22 56 0 0 chr4 111722322 111722358 -72566304 + AT_rich Low_complexity Low_complexity 1 36 0 219 139 0 0 chr4 111723756 111723792 -72564870 + (TTTC)n Simple_repeat Simple_repeat 1 36 0 210 299 209 0 chr4 111725010 111725077 -72563585 - L2 LINE L2 -33 3239 3159 22 56 0 0 chr4 111725311 111725347 -72563315 + AT_rich Low_complexity Low_complexity 1 36 0 222 300 70 40 chr4 111726635 111726735 -72561927 + MIR SINE MIR 45 147 -61 3314 87 18 2 chr4 111727079 111727525 -72561137 - MLT2A2 LTR ERVL 0 453 1 1664 188 12 70 chr4 111728065 111728479 -72560183 - MLT1B LTR MaLR 0 390 1 227 235 29 15 chr4 111728482 111728550 -72560112 - LTR33A LTR ERVL -11 512 444 2636 107 107 2 chr4 111728594 111729015 -72559647 - MER4C LTR ERV1 0 465 1 186 308 13 51 chr4 111729416 111729494 -72559168 - L2 LINE L2 -1 3271 3197 442 298 204 0 chr4 111729518 111729699 -72558963 - MIR SINE MIR -11 251 34 183 283 62 80 chr4 111729887 111730000 -72558662 + L2 LINE L2 1310 1420 -1894 256 150 0 0 chr4 111730025 111730065 -72558597 - MLT2D LTR ERVL -8 406 367 240 143 0 0 chr4 111730068 111730110 -72558552 + (TG)n Simple_repeat Simple_repeat 1 42 0 1181 245 108 21 chr4 111730115 111730543 -72558119 - MLT2B2 LTR ERVL -50 465 1 1632 160 32 111 chr4 111730654 111731060 -72557602 + MLT1A1 LTR MaLR 1 365 0 667 304 97 68 chr4 111731537 111731677 -72556985 + L1ME4a LINE L1 3153 3287 -2859 1811 181 6 16 chr4 111731677 111731992 -72556670 + AluJo SINE Alu 1 312 0 667 304 97 68 chr4 111731992 111732649 -72556013 + L1ME4a LINE L1 3287 3973 -2173 812 161 8 0 chr4 111732913 111733037 -72555625 - AluJb SINE Alu -187 125 1 420 20 0 0 chr4 111733703 111733752 -72554910 + (CA)n Simple_repeat Simple_repeat 2 50 0 385 300 79 36 chr4 111734577 111734907 -72553755 + L1ME4a LINE L1 5302 5645 -2163 1766 109 147 8 chr4 111735038 111735304 -72553358 + AluSg SINE Alu 3 305 -5 904 122 6 6 chr4 111735470 111735626 -72553036 + (TTCC)n Simple_repeat Simple_repeat 3 158 0 329 293 49 41 chr4 111736101 111736224 -72552438 + MIR3 SINE MIR 79 202 -6 559 302 48 5 chr4 111736341 111736530 -72552132 - MIR SINE MIR -8 254 58 316 306 74 0 chr4 111737059 111737180 -72551482 + L2 LINE L2 3175 3304 -9 1176 152 89 40 chr4 111737566 111737790 -72550872 - AluJb SINE Alu -19 293 59 2241 98 3 0 chr4 111738953 111739248 -72549414 + AluSc SINE Alu 1 296 -13 195 69 0 0 chr4 111739292 111739321 -72549341 + (TG)n Simple_repeat Simple_repeat 2 30 0 556 241 3 3 chr4 111739992 111740323 -72548339 + (CA)n Simple_repeat Simple_repeat 1 331 0 397 215 0 54 chr4 111740432 111740618 -72548044 + (CATATA)n Simple_repeat Simple_repeat 1 176 0 324 308 122 6 chr4 111740645 111740817 -72547845 + L1ME4a LINE L1 5927 6118 -3 22 80 0 0 chr4 111740820 111740870 -72547792 + AT_rich Low_complexity Low_complexity 1 50 0 2561 91 8 3 chr4 111740874 111741227 -72547435 + THE1A LTR MaLR 1 355 0 11693 93 6 4 chr4 111741227 111742805 -72545857 + THE1A-int LTR MaLR 1 1580 0 2268 127 8 8 chr4 111742805 111743160 -72545502 + THE1A LTR MaLR 1 355 0 2133 110 3 0 chr4 111743454 111743746 -72544916 + AluSx SINE Alu 1 293 -19 222 194 0 0 chr4 111745181 111745217 -72543445 + MIR SINE MIR 218 253 -9 283 284 32 21 chr4 111745988 111746083 -72542579 - MLT1J2 LTR MaLR -59 391 296 532 300 13 79 chr4 111747078 111747305 -72541357 - MIR SINE MIR -10 252 41 567 284 80 48 chr4 111748529 111748881 -72539781 - L2 LINE L2 -1 3312 2950 2502 87 0 0 chr4 111750103 111750413 -72538249 - AluSg SINE Alu 0 310 1 21 36 0 0 chr4 111750818 111750846 -72537816 + AT_rich Low_complexity Low_complexity 1 28 0 321 222 0 0 chr4 111751124 111751196 -72537466 - MER116 DNA Mariner -3 77 6 1738 168 11 0 chr4 111751394 111751697 -72536965 - AluJo SINE Alu 0 314 9 237 359 99 36 chr4 111751703 111751926 -72536736 - MIR SINE MIR -19 243 7 265 244 56 22 chr4 111752894 111752984 -72535678 - L2 LINE L2 -18 3295 3203 448 277 10 94 chr4 111753737 111753869 -72534793 + MER5A DNA MER1_type 4 115 -74 1992 134 25 0 chr4 111753869 111754153 -72534509 - AluSx SINE Alu -19 293 3 448 277 10 94 chr4 111754153 111754222 -72534440 + MER5A DNA MER1_type 115 188 -1 1379 196 143 19 chr4 111755163 111755577 -72533085 + MLT1C LTR MaLR 3 467 0 239 250 163 0 chr4 111755823 111755903 -72532759 - MIR3 SINE MIR -24 184 92 7708 161 13 4 chr4 111756190 111758649 -72530013 - L1PB1 LINE L1 -2 6865 4391 4830 153 28 6 chr4 111758642 111759557 -72529105 - L1PB1 LINE L1 -4536 2327 1392 * 828 211 11 0 chr4 111759554 111759744 -72528918 - L1PB1 LINE L1 -6666 197 6 * 218 184 53 0 chr4 111759844 111759920 -72528742 + CT-rich Low_complexity Low_complexity 2 81 0 1299 162 19 9 chr4 111760391 111760601 -72528061 + AluJo SINE Alu 86 297 -15 660 268 92 8 chr4 111760677 111761057 -72527605 + L1MEc LINE L1 1025 1436 -4960 1940 161 13 6 chr4 111761057 111761374 -72527288 + 7SLRNA srpRNA srpRNA 1 319 -1 306 264 73 45 chr4 111761402 111761512 -72527150 + HAL1 LINE L1 1424 1536 -971 1250 97 0 0 chr4 111761540 111761705 -72526957 + U1 snRNA snRNA 1 165 0 697 236 51 48 chr4 111761714 111762007 -72526655 + L1MEc LINE L1 1770 2063 -4333 1219 249 69 5 chr4 111762103 111762669 -72525993 + L1MEc LINE L1 2036 2592 -3623 24 0 0 0 chr4 111762874 111762898 -72525764 + AT_rich Low_complexity Low_complexity 1 24 0 288 343 17 6 chr4 111762901 111763082 -72525580 - HAL1b LINE L1 -888 460 278 33 56 0 0 chr4 111763120 111763174 -72525488 + AT_rich Low_complexity Low_complexity 1 54 0 367 267 12 0 chr4 111764236 111764322 -72524340 - L1MC4 LINE L1 -1342 6700 6614 1776 176 0 16 chr4 111764377 111764684 -72523978 + AluJo SINE Alu 1 302 -10 3195 195 19 18 chr4 111764688 111765603 -72523059 + L1MB7 LINE L1 5091 6009 -175 42399 36 1 7 chr4 111765732 111771916 -72516746 - L1PA4 LINE L1 -3 6152 3 229 214 18 0 chr4 111771917 111771973 -72516689 - MER69 DNA AcHobo -3 2523 2467 230 179 54 0 chr4 111772044 111772100 -72516562 + LTR8A LTR ERV1 1 59 -668 1473 106 0 0 chr4 111772104 111772302 -72516360 + AluY SINE Alu 1 198 -113 23 0 0 0 chr4 111775377 111775400 -72513262 + AT_rich Low_complexity Low_complexity 1 23 0 1744 169 3 35 chr4 111776149 111776462 -72512200 - AluJo SINE Alu -6 306 4 2060 112 49 0 chr4 111776579 111776865 -72511797 - AluSq SINE Alu -13 300 1 26 0 0 0 chr4 111777613 111777639 -72511023 + AT_rich Low_complexity Low_complexity 1 26 0 1632 176 10 21 chr4 111777639 111777929 -72510733 - AluJb SINE Alu -25 287 1 223 309 0 0 chr4 111778206 111778261 -72510401 - L2 LINE L2 0 3313 3259 180 282 0 0 chr4 111778227 111778266 -72510396 - MIR SINE MIR -15 247 209 * 298 306 75 14 chr4 111778303 111778450 -72510212 - L2 LINE L2 -220 3052 2897 249 331 39 46 chr4 111778501 111778631 -72510031 - L2 LINE L2 -173 3099 2971 564 129 0 0 chr4 111779209 111779310 -72509352 + (TCTG)n Simple_repeat Simple_repeat 2 102 0 216 274 0 0 chr4 111780020 111780071 -72508591 + (CATA)n Simple_repeat Simple_repeat 2 52 0 425 223 136 75 chr4 111780158 111780308 -72508354 - L1ME4a LINE L1 -8 6113 5973 2209 106 3 0 chr4 111780308 111780615 -72508047 - AluSp SINE Alu 0 309 2 425 223 136 75 chr4 111780615 111780728 -72507934 - L1ME4a LINE L1 -148 5973 5833 295 281 5 14 chr4 111780739 111780901 -72507761 - L1ME4a LINE L1 -364 5757 5625 351 351 48 37 chr4 111780987 111781255 -72507407 - L1ME4a LINE L1 -535 5586 5316 1971 167 0 0 chr4 111781973 111782273 -72506389 - AluJo SINE Alu -12 300 1 908 171 0 13 chr4 111782601 111782753 -72505909 - AluJb SINE Alu -10 302 153 259 242 30 15 chr4 111782765 111782831 -72505831 + MER5A DNA MER1_type 123 189 0 2163 99 3 20 chr4 111782910 111783249 -72505413 + AluSp SINE Alu 1 313 0 183 376 96 24 chr4 111783851 111783976 -72504686 + L2 LINE L2 3139 3272 0 901 321 102 64 chr4 111786275 111787304 -72501358 + L2 LINE L2 1977 3045 -227 2284 95 20 0 chr4 111787304 111787600 -72501062 + AluSc SINE Alu 1 302 -7 901 321 102 64 chr4 111787600 111787833 -72500829 + L2 LINE L2 3045 3268 -4 218 326 116 0 chr4 111788017 111788164 -72500498 + L2 LINE L2 2338 2501 -813 415 311 154 42 chr4 111788168 111788969 -72499693 + L2 LINE L2 2087 2976 -338 229 260 13 26 chr4 111789864 111789941 -72498721 - MIR SINE MIR -135 127 52 24 0 0 0 chr4 111790571 111790595 -72498067 + AT_rich Low_complexity Low_complexity 1 24 0 243 0 0 0 chr4 111791439 111791466 -72497196 + (T)n Simple_repeat Simple_repeat 1 27 0 2331 81 0 0 chr4 111791574 111791886 -72496776 - AluSq SINE Alu 0 313 2 201 39 0 0 chr4 111792273 111792299 -72496363 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1703 183 58 153 chr4 111793306 111794105 -72494557 + LTR8A LTR ERV1 1 723 -4 2301 113 0 0 chr4 111794404 111794705 -72493957 + AluSx SINE Alu 1 301 -11 215 312 151 0 chr4 111795324 111795417 -72493245 - L3b LINE CR1 -262 1321 1215 278 167 56 0 chr4 111796844 111796898 -72491764 - MER116 DNA Mariner -2 78 22 2057 109 7 10 chr4 111796909 111797203 -72491459 - AluSx SINE Alu -19 293 1 225 355 107 8 chr4 111797213 111797334 -72491328 - MIR SINE MIR -108 154 22 1457 196 73 50 chr4 111797367 111797499 -72491163 + MLT1A1 LTR MaLR 1 129 -236 2150 129 0 0 chr4 111797499 111797794 -72490868 + AluSx SINE Alu 1 295 -17 1457 196 73 50 chr4 111797794 111798018 -72490644 + MLT1A1 LTR MaLR 129 365 0 990 281 91 47 chr4 111798202 111798416 -72490246 - L2 LINE L2 -15 3298 3095 1998 133 20 13 chr4 111798416 111798716 -72489946 - AluSx SINE Alu -8 304 3 990 281 91 47 chr4 111798716 111799300 -72489362 - L2 LINE L2 -218 3095 2461 23 68 0 0 chr4 111799544 111799588 -72489074 + AT_rich Low_complexity Low_complexity 1 44 0 2233 114 0 0 chr4 111800347 111800646 -72488016 - AluSq SINE Alu -14 299 1 409 121 0 0 chr4 111800685 111800751 -72487911 + Alu SINE Alu 240 305 -7 236 278 105 60 chr4 111801992 111802125 -72486537 + MIR SINE MIR 58 196 -66 465 319 7 7 chr4 111802189 111802333 -72486329 + L2 LINE L2 3168 3311 -2 258 312 88 46 chr4 111802665 111802948 -72485714 + L2 LINE L2 2750 3049 -223 1592 154 41 41 chr4 111803070 111803363 -72485299 - AluJo SINE Alu -17 295 3 21 0 0 0 chr4 111803638 111803659 -72485003 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr4 111804483 111804519 -72484143 + AT_rich Low_complexity Low_complexity 1 36 0 252 239 0 65 chr4 111804846 111804949 -72483713 - MIR SINE MIR -23 185 91 1070 79 0 0 chr4 111805304 111805443 -72483219 + MER85 DNA T2_type 1 139 0 42810 33 22 1 chr4 111806079 111812108 -72476554 - L1PA2 LINE L1 0 6155 1 2142 137 0 0 chr4 111813387 111813687 -72474975 - AluSx SINE Alu -10 302 3 24 53 0 0 chr4 111817252 111817290 -72471372 + AT_rich Low_complexity Low_complexity 1 38 0 336 94 0 0 chr4 111819326 111819379 -72469283 + (CAA)n Simple_repeat Simple_repeat 2 54 0 23 0 0 0 chr4 111821061 111821084 -72467578 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 111821806 111821827 -72466835 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 111823193 111823222 -72465440 + AT_rich Low_complexity Low_complexity 1 29 0 236 135 0 19 chr4 111823840 111823892 -72464770 + (CA)n Simple_repeat Simple_repeat 1 51 0 26 30 0 0 chr4 111824081 111824114 -72464548 + AT_rich Low_complexity Low_complexity 1 33 0 2012 107 3 60 chr4 111824192 111824509 -72464153 - AluSq SINE Alu -14 299 1 2476 65 0 0 chr4 111829517 111829811 -72458851 - AluSc SINE Alu -15 294 1 2334 81 0 3 chr4 111831073 111831368 -72457294 + AluSg SINE Alu 1 294 -16 26 30 0 0 chr4 111832136 111832169 -72456493 + AT_rich Low_complexity Low_complexity 1 33 0 325 298 11 0 chr4 111832608 111832702 -72455960 + MER117 DNA MER1_type 1 95 -102 259 273 125 0 chr4 111833376 111833464 -72455198 + MER91A DNA MER1_type 98 196 0 27 73 0 0 chr4 111833944 111833999 -72454663 + AT_rich Low_complexity Low_complexity 1 55 0 22 35 0 0 chr4 111834210 111834239 -72454423 + AT_rich Low_complexity Low_complexity 1 29 0 200 182 0 0 chr4 111835979 111836012 -72452650 + (ATG)n Simple_repeat Simple_repeat 3 35 0 488 179 51 26 chr4 111836700 111836817 -72451845 - MIR SINE MIR -45 217 98 1928 124 0 28 chr4 111837064 111837385 -72451277 + AluSx SINE Alu 1 313 0 1313 218 81 83 chr4 111837562 111837686 -72450976 - L1MC5 LINE L1 -656 7305 7182 1797 166 14 3 chr4 111837686 111837981 -72450681 + AluJo SINE Alu 1 298 -14 1313 218 81 83 chr4 111837981 111838461 -72450201 - L1MC5 LINE L1 -779 7182 6702 408 250 61 24 chr4 111838627 111838839 -72449823 + L1MC5 LINE L1 7623 7842 -119 1457 201 14 41 chr4 111839797 111840166 -72448496 + MLT1A1 LTR MaLR 1 359 -6 229 359 0 0 chr4 111840246 111840324 -72448338 + MER5B DNA MER1_type 2 79 -99 303 242 0 15 chr4 111840256 111840322 -72448340 - MER5A DNA MER1_type -12 177 113 1642 167 4 0 chr4 111840448 111840763 -72447899 + AluJb SINE Alu 18 333 0 200 57 0 29 chr4 111840782 111840817 -72447845 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1615 172 0 34 chr4 111840821 111841112 -72447550 - AluJb SINE Alu -31 281 1 2616 194 14 4 chr4 111841118 111841623 -72447039 - L1MB2 LINE L1 -48 6123 5614 189 321 0 0 chr4 111841623 111841676 -72446986 - MER5A DNA MER1_type -74 115 63 273 119 0 0 chr4 111843355 111843397 -72445265 + (TG)n Simple_repeat Simple_repeat 1 42 0 887 183 5 54 chr4 111843823 111844009 -72444653 + Tigger1 DNA MER2_type 2 178 -2240 * 2136 158 24 56 chr4 111844000 111844214 -72444448 + Tigger1 DNA MER2_type 2020 2216 -202 689 181 24 0 chr4 111844214 111844341 -72444321 - FLAM_C SINE Alu -2 131 2 2136 158 24 56 chr4 111844341 111844538 -72444124 + Tigger1 DNA MER2_type 2216 2418 0 673 170 13 26 chr4 111844699 111844852 -72443810 - L1MA7 LINE L1 -5 6286 6136 394 242 235 0 chr4 111845212 111845361 -72443301 - MIR SINE MIR -77 185 2 227 247 130 0 chr4 111845994 111846071 -72442591 - MIR SINE MIR -72 190 104 573 278 130 0 chr4 111846852 111847014 -72441648 + MER5A DNA MER1_type 6 188 -1 2138 149 6 8 chr4 111847064 111847426 -72441236 - MER46B DNA MER2_type 0 236 1 1446 205 53 42 chr4 111847451 111847743 -72440919 + MLT1A1 LTR MaLR 1 299 -66 2118 125 3 0 chr4 111847743 111848047 -72440615 + AluSx SINE Alu 1 305 -7 1446 205 53 42 chr4 111848047 111848115 -72440547 + MLT1A1 LTR MaLR 299 365 0 23 0 0 0 chr4 111850941 111850964 -72437698 + AT_rich Low_complexity Low_complexity 1 23 0 472 306 47 6 chr4 111851690 111851860 -72436802 - MIR SINE MIR -56 206 30 374 368 66 20 chr4 111852285 111852692 -72435970 + L2 LINE L2 2569 3012 -260 262 292 99 68 chr4 111857416 111857593 -72431069 + MIR SINE MIR 3 180 -64 293 295 53 0 chr4 111858088 111858183 -72430479 - MIR3 SINE MIR -5 203 104 2430 64 0 0 chr4 111859374 111859671 -72428991 + AluY SINE Alu 1 297 -14 812 148 0 15 chr4 111860326 111860461 -72428201 - FLAM_C SINE Alu 0 133 1 1933 78 0 0 chr4 111860709 111860993 -72427669 - AluY SINE Alu 0 322 39 401 301 175 15 chr4 111861383 111861589 -72427073 + MIR SINE MIR 12 250 -12 1893 133 25 0 chr4 111867134 111867413 -72421249 - AluJb SINE Alu -26 286 1 935 168 19 48 chr4 111868442 111868650 -72420012 + MER3 DNA MER1_type 4 205 -4 283 304 32 32 chr4 111869679 111869804 -72418858 - L1ME LINE L1 -444 5677 5553 657 239 138 0 chr4 111870016 111870234 -72418428 - MIR SINE MIR -2 260 13 1271 216 75 32 chr4 111872707 111873055 -72415607 + MLT1A2 LTR MaLR 10 372 -2 427 275 114 8 chr4 111873068 111873199 -72415463 - MIR SINE MIR -36 226 82 362 267 0 0 chr4 111873798 111873873 -72414789 + L2 LINE L2 3198 3272 0 645 333 110 12 chr4 111874000 111874426 -72414236 + L2 LINE L2 2498 2965 -349 312 261 0 0 chr4 111875363 111875428 -72413234 - MER2 DNA MER2_type 0 345 281 723 188 7 36 chr4 111875445 111875583 -72413079 - MER2 DNA MER2_type -211 134 1 1501 178 93 0 chr4 111875666 111875935 -72412727 + AluJb SINE Alu 2 295 -17 188 365 39 22 chr4 111877846 111878027 -72410635 - L2 LINE L2 -173 3099 2916 1663 174 21 7 chr4 111878143 111878431 -72410231 + AluJo SINE Alu 6 297 -15 2044 122 20 7 chr4 111879916 111880220 -72408442 + AluSq SINE Alu 1 308 -5 304 374 68 53 chr4 111881347 111881612 -72407050 + L2 LINE L2 2996 3264 -8 188 380 70 0 chr4 111881746 111881817 -72406845 - L2 LINE L2 0 3272 3197 2210 106 0 0 chr4 111882309 111882610 -72406052 + AluSx SINE Alu 1 301 -11 591 326 127 27 chr4 111883293 111883976 -72404686 + L2 LINE L2 2563 3309 -4 2227 110 0 0 chr4 111884098 111884408 -72404254 - AluSx SINE Alu -2 310 1 626 300 45 25 chr4 111884572 111884815 -72403847 + MIR SINE MIR 15 262 0 4514 165 45 25 chr4 111885026 111885989 -72402673 - L1MB4 LINE L1 -6 6174 5195 859 135 23 0 chr4 111885990 111886123 -72402539 - AluJo SINE Alu -176 136 1 1288 146 36 29 chr4 111886127 111886408 -72402254 - L1MB4 LINE L1 -946 5200 4918 5911 148 21 14 chr4 111886860 111888532 -72400130 + L1MA8 LINE L1 4270 5950 -341 1373 102 0 5 chr4 111888532 111888718 -72399944 + AluSq SINE Alu 1 185 -128 3044 91 7 0 chr4 111889385 111890151 -72398511 + L1PA14 LINE L1 5287 6161 0 207 161 0 0 chr4 111890183 111890214 -72398448 + (CA)n Simple_repeat Simple_repeat 2 32 0 279 351 63 30 chr4 111891034 111891305 -72397357 + L2 LINE L2 2460 2739 -575 210 366 24 0 chr4 111891387 111891469 -72397193 - MIR SINE MIR -144 118 35 786 170 0 33 chr4 111892987 111893140 -72395522 - FRAM SINE Alu -28 148 1 1176 271 74 55 chr4 111893303 111893992 -72394670 - HAL1b LINE L1 -7 1341 640 872 229 71 22 chr4 111894115 111894382 -72394280 - HAL1b LINE L1 -969 379 100 2297 164 18 37 chr4 111896292 111896726 -72391936 + MSTB LTR MaLR 1 426 0 526 314 63 21 chr4 111897533 111897772 -72390890 + MIR SINE MIR 14 262 0 1265 91 6 0 chr4 111897854 111898029 -72390633 + L1PA10 LINE L1 5993 6168 0 2279 100 10 0 chr4 111898172 111898482 -72390180 + AluSp SINE Alu 1 313 0 512 231 33 0 chr4 111899313 111899434 -72389228 - L1ME1 LINE L1 -5 6161 6037 386 338 25 35 chr4 111901150 111901351 -72387311 - L2 LINE L2 -3105 209 11 285 310 0 0 chr4 111902329 111902400 -72386262 + (CATA)n Simple_repeat Simple_repeat 2 72 0 320 120 75 30 chr4 111902577 111902710 -72385952 + (TATAG)n Simple_repeat Simple_repeat 2 140 0 487 294 236 37 chr4 111903008 111903440 -72385222 + MLT1K LTR MaLR 71 588 0 527 314 60 24 chr4 111903986 111904238 -72384424 + MIR SINE MIR 2 262 0 1740 269 71 62 chr4 111905667 111906887 -72381775 - L2 LINE L2 -15 3298 2063 183 318 30 15 chr4 111907021 111907087 -72381575 + L2 LINE L2 3247 3313 0 250 274 14 27 chr4 111907117 111907190 -72381472 - L2 LINE L2 0 3313 3242 442 285 51 29 chr4 111908867 111909004 -72379658 + L2 LINE L2 3174 3313 0 1931 132 11 7 chr4 111909794 111910094 -72378568 - AluSx SINE Alu 0 301 1 6889 169 87 37 chr4 111910106 111910877 -72377785 + L1MCa LINE L1 1 732 -5694 2499 121 54 0 chr4 111910877 111911283 -72377379 - MSTA LTR MaLR 0 428 1 6889 169 87 37 chr4 111911283 111912381 -72376281 + L1MCa LINE L1 732 2064 -4362 315 0 0 0 chr4 111912381 111912416 -72376246 + (TG)n Simple_repeat Simple_repeat 2 36 0 6889 169 87 37 chr4 111912416 111912520 -72376142 + L1MCa LINE L1 2064 2161 -4265 9956 143 20 15 chr4 111912520 111913761 -72374901 - Tigger1 DNA MER2_type -12 2406 1153 2323 81 3 0 chr4 111913761 111914057 -72374605 - AluY SINE Alu -14 297 1 9956 143 20 15 chr4 111914057 111914533 -72374129 - Tigger1 DNA MER2_type -1265 1153 681 5016 179 19 47 chr4 111964533 111965133 -72323529 + L1MC1 LINE L1 5284 5841 -492 2420 137 18 62 chr4 111965133 111965586 -72323076 - Tigger2a DNA MER2_type 0 434 2 5016 179 19 47 chr4 111965586 111966060 -72322602 + L1MC1 LINE L1 5841 6327 -6 1426 180 28 28 chr4 111966217 111966500 -72322162 - AluJo SINE Alu -18 294 12 22 80 0 0 chr4 111966926 111966976 -72321686 + AT_rich Low_complexity Low_complexity 1 50 0 1713 155 23 16 chr4 111967263 111967573 -72321089 - AluJo SINE Alu 0 312 1 1920 184 60 69 chr4 111967912 111968462 -72320200 + MER34B LTR ERV1 11 555 -10 225 0 0 0 chr4 111968776 111968801 -72319861 + (TTTTA)n Simple_repeat Simple_repeat 4 28 0 1482 39 0 49 chr4 111968801 111969005 -72319657 - L1PA3 LINE L1 -13 6142 5949 1177 15 0 0 chr4 111969005 111969140 -72319522 + L1PA3 LINE L1 5834 5968 -187 25 0 0 0 chr4 111969236 111969261 -72319401 + AT_rich Low_complexity Low_complexity 1 25 0 261 0 0 0 chr4 111969350 111969379 -72319283 + (TA)n Simple_repeat Simple_repeat 1 29 0 720 145 57 0 chr4 111969396 111969520 -72319142 + FLAM_C SINE Alu 1 131 -2 25 31 0 0 chr4 111970432 111970464 -72318198 + AT_rich Low_complexity Low_complexity 1 32 0 1153 226 89 54 chr4 111970528 111971046 -72317616 + MER34 LTR ERV1 2 537 -5 3889 195 96 35 chr4 111971301 111971765 -72316897 + L1MDa LINE L1 850 1284 -5256 2119 62 3 84 chr4 111971765 111972086 -72316576 + AluSg SINE Alu 1 295 -15 3889 195 96 35 chr4 111972086 111972792 -72315870 + L1MDa LINE L1 1284 2091 -4449 980 309 77 35 chr4 111972944 111972971 -72315691 + MLT1L LTR MaLR 1 25 -590 1727 169 100 26 chr4 111972971 111973390 -72315272 + LTR7 LTR ERV1 1 450 0 980 309 77 35 chr4 111973390 111973879 -72314783 + MLT1L LTR MaLR 25 539 -76 608 292 16 52 chr4 111973920 111974247 -72314415 - L1ME LINE L1 -318 5803 5497 230 321 12 12 chr4 111975159 111975240 -72313422 + L2 LINE L2 2543 2623 -691 1026 157 11 0 chr4 111975626 111975811 -72312851 - L1PA13 LINE L1 0 6163 5977 281 26 26 0 chr4 111976617 111976655 -72312007 + (CA)n Simple_repeat Simple_repeat 2 40 0 207 69 0 0 chr4 111977547 111977576 -72311086 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 217 342 42 25 chr4 111978788 111978908 -72309754 - MIR SINE MIR -122 140 19 195 69 0 0 chr4 111979460 111979489 -72309173 + (GA)n Simple_repeat Simple_repeat 1 29 0 35 24 0 0 chr4 111979769 111979811 -72308851 + AT_rich Low_complexity Low_complexity 1 42 0 266 286 0 12 chr4 111979912 111979996 -72308666 + MLT1F LTR MaLR 20 102 -440 376 267 80 20 chr4 111980189 111980339 -72308323 + MLT1H LTR MaLR 383 541 -8 32 43 0 0 chr4 111980833 111980879 -72307783 + AT_rich Low_complexity Low_complexity 1 46 0 1901 158 16 0 chr4 111982762 111983065 -72305597 + AluSx SINE Alu 1 308 -4 601 196 23 30 chr4 111983241 111983374 -72305288 - FLAM_A SINE Alu -1 132 1 432 305 11 32 chr4 111983385 111983485 -72305177 - MER112 DNA MER1_type -77 183 87 224 77 26 0 chr4 111983485 111983524 -72305138 + (CA)n Simple_repeat Simple_repeat 1 40 0 432 305 11 32 chr4 111983524 111983610 -72305052 - MER112 DNA MER1_type -173 87 1 1692 237 125 34 chr4 111984601 111985272 -72303390 + L2 LINE L2 2307 3041 -272 519 241 72 18 chr4 111985278 111985444 -72303218 + MER58B DNA MER1_type 167 341 0 631 309 63 65 chr4 111985444 111985923 -72302739 - L2 LINE L2 -2542 772 295 2233 104 0 0 chr4 111986088 111986376 -72302286 - AluSc SINE Alu -15 294 7 21 104 0 0 chr4 111986389 111986466 -72302196 + AT_rich Low_complexity Low_complexity 1 77 0 1078 172 49 5 chr4 111986511 111986715 -72301947 - AluJo SINE Alu -16 296 84 189 270 0 63 chr4 111987260 111987323 -72301339 - L2 LINE L2 -52 3261 3203 180 312 144 24 chr4 111987684 111987809 -72300853 + L2 LINE L2 2619 2758 -556 318 185 141 33 chr4 111987840 111987932 -72300730 + MER94 DNA DNA 5 106 -28 1485 201 21 11 chr4 111988059 111988343 -72300319 + AluJo SINE Alu 1 287 -25 447 245 65 0 chr4 111988363 111988502 -72300160 + LTR37B LTR ERV1 15 162 -306 410 253 44 10 chr4 111988509 111988661 -72300001 + MER58 DNA MER1_type 1 2420 0 428 256 54 18 chr4 111988683 111988851 -72299811 + LTR37B LTR ERV1 212 385 -83 27 62 0 0 chr4 111988867 111988915 -72299747 + AT_rich Low_complexity Low_complexity 1 48 0 243 79 0 0 chr4 111988960 111988998 -72299664 + (CA)n Simple_repeat Simple_repeat 2 39 0 1463 168 104 16 chr4 111989004 111989313 -72299349 - MER7A DNA MER2_type -4 342 9 225 0 0 0 chr4 111989315 111989340 -72299322 + (TG)n Simple_repeat Simple_repeat 2 26 0 261 299 0 0 chr4 111989367 111989444 -72299218 - L1MC/D LINE L1 -2016 5792 5716 1031 293 62 39 chr4 111990780 111991444 -72297218 - L2 LINE L2 -2 3311 2635 974 138 0 0 chr4 111991466 111991604 -72297058 + AluSg/x SINE Alu 159 296 -16 514 260 195 9 chr4 111991606 111991837 -72296825 - L2 LINE L2 -705 2609 2336 183 304 101 36 chr4 111992176 111992314 -72296348 + MIR3 SINE MIR 15 161 -47 2993 201 23 30 chr4 111992893 111993551 -72295111 + MER82 DNA MER2_type 1 653 0 22 0 0 0 chr4 111994609 111994631 -72294031 + AT_rich Low_complexity Low_complexity 1 22 0 406 236 0 121 chr4 111994979 111995144 -72293518 + MER112 DNA MER1_type 4 148 -112 312 303 90 119 chr4 111996028 111996507 -72292155 - LTR67 LTR ERVL -62 495 31 187 349 48 0 chr4 111996579 111996642 -72292020 - L3b LINE CR1 -4 1579 1514 757 125 0 66 chr4 111996817 111996953 -72291709 + FLAM_C SINE Alu 11 137 -6 2018 118 14 0 chr4 111997794 111998099 -72290563 - AluSq SINE Alu 0 309 1 373 318 91 32 chr4 111999262 111999482 -72289180 + MIR SINE MIR 29 261 -1 289 325 18 9 chr4 112000261 112000375 -72288287 - L2 LINE L2 -4 3309 3195 212 238 163 12 chr4 112000979 112001059 -72287603 - MIR SINE MIR -39 223 132 1403 298 72 19 chr4 112001546 112002073 -72286589 + L2 LINE L2 2205 2759 -555 1660 197 35 40 chr4 112002078 112002449 -72286213 - MLT1A2 LTR MaLR -5 369 1 490 316 26 32 chr4 112002663 112002853 -72285809 + L2 LINE L2 3125 3313 0 25 31 0 0 chr4 112003431 112003463 -72285199 + AT_rich Low_complexity Low_complexity 1 32 0 213 39 0 0 chr4 112003840 112003866 -72284796 + (TG)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr4 112004511 112004534 -72284128 + AT_rich Low_complexity Low_complexity 1 23 0 1831 150 10 32 chr4 112004542 112004856 -72283806 + AluJo SINE Alu 6 312 0 233 344 0 0 chr4 112005034 112005124 -72283538 - MER91A DNA MER1_type 0 196 107 206 323 227 25 chr4 112005246 112005881 -72282781 - L2 LINE L2 -338 2976 2214 207 351 0 0 chr4 112006042 112006099 -72282563 - L2 LINE L2 -79 3193 3137 220 264 127 27 chr4 112006146 112006256 -72282406 - L2 LINE L2 -1319 1995 1875 270 402 17 0 chr4 112006811 112006928 -72281734 + MIR SINE MIR 19 137 -125 2257 88 3 19 chr4 112007303 112007611 -72281051 + AluSp SINE Alu 2 304 -9 198 103 0 0 chr4 112008296 112008325 -72280337 + (T)n Simple_repeat Simple_repeat 1 29 0 315 213 39 126 chr4 112008383 112008510 -72280152 - MSTB2 LTR MaLR -341 116 1 942 227 154 13 chr4 112010494 112010586 -72278076 + MER58B DNA MER1_type 1 79 -2341 2449 78 0 0 chr4 112010586 112010892 -72277770 - AluY SINE Alu -5 306 1 942 227 154 13 chr4 112010892 112011098 -72277564 + MER58B DNA MER1_type 79 341 0 778 295 116 30 chr4 112011843 112012412 -72276250 - L2 LINE L2 -1 3312 2709 270 241 17 0 chr4 112012413 112012471 -72276191 + L2 LINE L2 2680 2738 -576 870 173 79 89 chr4 112013067 112013281 -72275381 - MER20 DNA MER1_type -2 217 6 23 33 0 0 chr4 112013827 112013857 -72274805 + AT_rich Low_complexity Low_complexity 1 30 0 187 331 44 44 chr4 112014505 112014641 -72274021 + L2 LINE L2 2339 2474 -840 2189 104 0 14 chr4 112015376 112015673 -72272989 + AluSx SINE Alu 1 293 -19 2337 90 3 3 chr4 112015814 112016113 -72272549 + AluSg SINE Alu 1 299 -11 25 51 0 0 chr4 112017594 112017633 -72271029 + AT_rich Low_complexity Low_complexity 1 39 0 792 319 40 9 chr4 112017680 112017906 -72270756 + MIR SINE MIR 2 234 -28 284 308 106 10 chr4 112019721 112019825 -72268837 + MIR3 SINE MIR 84 197 -11 371 307 180 14 chr4 112022089 112022396 -72266266 + L2 LINE L2 2709 3068 -245 1578 205 92 13 chr4 112022400 112022810 -72265852 + MER31B LTR ERV1 1 661 0 402 267 115 47 chr4 112022837 112023028 -72265634 + L2 LINE L2 3104 3307 -6 251 159 58 14 chr4 112023158 112023227 -72265435 + L1ME4a LINE L1 6047 6118 -3 721 279 110 38 chr4 112023881 112024272 -72264390 + L2 LINE L2 2834 3252 -61 192 40 0 0 chr4 112024782 112024807 -72263855 + (CAAAC)n Simple_repeat Simple_repeat 1 25 0 2164 157 10 23 chr4 112024932 112025327 -72263335 + MLT1B LTR MaLR 1 390 0 1591 188 28 3 chr4 112025979 112026267 -72262395 - AluJo SINE Alu -17 295 1 2494 43 3 7 chr4 112026367 112026671 -72261991 - AluY SINE Alu -8 303 1 21 36 0 0 chr4 112026956 112026984 -72261678 + AT_rich Low_complexity Low_complexity 1 28 0 26 64 0 0 chr4 112027233 112027280 -72261382 + AT_rich Low_complexity Low_complexity 1 47 0 235 209 0 45 chr4 112027356 112027423 -72261239 + A-rich Low_complexity Low_complexity 2 65 0 748 212 29 106 chr4 112028211 112028456 -72260206 - Charlie1a DNA MER1_type -1228 227 2 1796 156 0 11 chr4 112028880 112029163 -72259499 + AluSx SINE Alu 1 280 -32 291 28 0 0 chr4 112029163 112029199 -72259463 + (TAA)n Simple_repeat Simple_repeat 1 36 0 27 81 0 0 chr4 112029284 112029346 -72259316 + AT_rich Low_complexity Low_complexity 1 62 0 2255 135 8 42 chr4 112029426 112029827 -72258835 + MLT1B LTR MaLR 4 390 0 2123 211 108 20 chr4 112029832 112030377 -72258285 - MLT1E LTR MaLR 0 593 1 2253 114 0 0 chr4 112030382 112030680 -72257982 - AluSq SINE Alu -15 298 1 303 191 0 0 chr4 112032145 112032208 -72256454 + (CA)n Simple_repeat Simple_repeat 2 64 0 307 232 0 29 chr4 112032815 112032884 -72255778 + L2 LINE L2 3206 3272 0 255 228 160 42 chr4 112033879 112034009 -72254653 + MIR SINE MIR 20 161 -86 26 50 0 0 chr4 112034129 112034169 -72254493 + AT_rich Low_complexity Low_complexity 1 40 0 26 50 0 0 chr4 112034812 112034852 -72253810 + AT_rich Low_complexity Low_complexity 1 40 0 201 39 0 0 chr4 112035233 112035259 -72253403 + (TCTG)n Simple_repeat Simple_repeat 3 28 0 1998 119 0 11 chr4 112035575 112035900 -72252762 + AluSg SINE Alu 1 322 0 24 67 0 0 chr4 112036022 112036067 -72252595 + AT_rich Low_complexity Low_complexity 1 45 0 1452 75 0 45 chr4 112036322 112036521 -72252141 + AluY SINE Alu 109 298 -13 1764 254 74 19 chr4 112036936 112037420 -72251242 + MER69 DNA AcHobo 14 524 -702 612 170 85 12 chr4 112037410 112037575 -72251087 + MER69 DNA AcHobo 2315 2491 -35 * 181 0 0 65 chr4 112038248 112038279 -72250383 + (TTAA)n Simple_repeat Simple_repeat 1 29 0 251 137 0 0 chr4 112038441 112038492 -72250170 + L1MA4 LINE L1 6246 6296 -4 23 33 0 0 chr4 112039571 112039601 -72249061 + AT_rich Low_complexity Low_complexity 1 30 0 296 211 40 0 chr4 112040828 112040904 -72247758 - L1ME4a LINE L1 -97 6024 5946 505 328 97 16 chr4 112041761 112042081 -72246581 + L2 LINE L2 675 1020 -2294 2285 165 103 15 chr4 112042149 112042623 -72246039 + MER34 LTR ERV1 27 542 0 326 347 32 98 chr4 112042633 112043002 -72245660 + L2 LINE L2 2924 3268 -4 240 228 18 0 chr4 112043852 112043909 -72244753 + MIR SINE MIR 83 140 -122 1275 111 63 36 chr4 112044060 112044313 -72244349 - L1MA5 LINE L1 -6 6294 6035 863 193 69 55 chr4 112044383 112044657 -72244005 - L1ME3A LINE L1 -12 6158 5881 256 210 0 81 chr4 112045646 112045708 -72242954 - FLAM_A SINE Alu -2 131 75 250 218 63 4 chr4 112046206 112046292 -72242370 - MIR SINE MIR -38 170 81 2650 98 25 0 chr4 112046771 112047137 -72241525 + THE1C LTR MaLR 1 375 0 21 36 0 0 chr4 112047799 112047827 -72240835 + AT_rich Low_complexity Low_complexity 1 28 0 40 73 0 0 chr4 112047864 112047946 -72240716 + AT_rich Low_complexity Low_complexity 1 82 0 23 0 0 0 chr4 112047957 112047980 -72240682 + AT_rich Low_complexity Low_complexity 1 23 0 296 378 14 14 chr4 112049141 112049289 -72239373 - L2 LINE L2 -234 3038 2891 1017 235 70 12 chr4 112049443 112049686 -72238976 + MIR SINE MIR 2 258 -4 2064 122 3 7 chr4 112050813 112051116 -72237546 - AluJb SINE Alu -10 302 1 2152 112 7 3 chr4 112051358 112051653 -72237009 + AluSx SINE Alu 1 296 -16 285 29 0 0 chr4 112052438 112052472 -72236190 + (CA)n Simple_repeat Simple_repeat 2 35 0 22 56 0 0 chr4 112052484 112052520 -72236142 + AT_rich Low_complexity Low_complexity 1 36 0 205 329 66 18 chr4 112054067 112054234 -72234428 + L2 LINE L2 2232 2406 -908 216 167 0 0 chr4 112054487 112054535 -72234127 + A-rich Low_complexity Low_complexity 1 48 0 2252 76 0 10 chr4 112054539 112054830 -72233832 + AluSc SINE Alu 1 288 -21 619 321 79 74 chr4 112055032 112055546 -72233116 + L2 LINE L2 2792 3304 -9 22 35 0 0 chr4 112056109 112056138 -72232524 + AT_rich Low_complexity Low_complexity 1 29 0 2125 125 7 0 chr4 112057051 112057356 -72231306 + AluSx SINE Alu 5 311 -1 565 155 6 39 chr4 112058040 112058221 -72230441 + (CATA)n Simple_repeat Simple_repeat 2 176 0 315 274 0 42 chr4 112058226 112058321 -72230341 - L1MC4 LINE L1 -1339 6703 6613 204 40 0 0 chr4 112058368 112058393 -72230269 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 2539 264 62 13 chr4 112060863 112061748 -72226914 + L2 LINE L2 2186 3125 -188 453 97 0 0 chr4 112061748 112061820 -72226842 + (CA)n Simple_repeat Simple_repeat 2 73 0 2539 264 62 13 chr4 112061820 112062006 -72226656 + L2 LINE L2 3125 3301 -12 778 242 106 4 chr4 112062242 112062469 -72226193 - MIR SINE MIR 0 262 13 180 152 0 0 chr4 112063054 112063087 -72225575 + L2 LINE L2 3280 3312 -1 2019 142 45 11 chr4 112063527 112063880 -72224782 - MER47A DNA MER2_type 0 366 2 598 254 6 29 chr4 112063926 112064099 -72224563 + MIR SINE MIR 90 258 -4 27 29 0 0 chr4 112064143 112064177 -72224485 + AT_rich Low_complexity Low_complexity 1 34 0 279 260 49 32 chr4 112064508 112064631 -72224031 - L1ME LINE L1 -441 5680 5556 869 281 36 51 chr4 112066926 112067261 -72221401 - LTR16A LTR ERVL -2 448 119 1588 181 35 3 chr4 112067290 112067577 -72221085 - AluJb SINE Alu -16 296 1 789 207 124 10 chr4 112067832 112068025 -72220637 - MER58C DNA MER1_type 0 215 1 1034 195 70 32 chr4 112068068 112068203 -72220459 - MER33 DNA MER1_type -2283 302 174 1638 181 36 4 chr4 112068203 112068480 -72220182 + AluSx SINE Alu 1 286 -26 1034 195 70 32 chr4 112068480 112068645 -72220017 - MER33 DNA MER1_type -2411 174 1 184 358 51 58 chr4 112068671 112068808 -72219854 - L2 LINE L2 0 3272 3137 1418 187 50 21 chr4 112068906 112069189 -72219473 - AluJo SINE Alu -21 291 1 21 0 0 0 chr4 112069500 112069521 -72219141 + AT_rich Low_complexity Low_complexity 1 21 0 1911 80 83 35 chr4 112070636 112070925 -72217737 + AluY SINE Alu 1 303 -8 376 203 0 0 chr4 112071144 112071229 -72217433 + L1MD3 LINE L1 7690 7986 -9 727 245 103 12 chr4 112072837 112073090 -72215572 + L3b LINE CR1 1102 1377 -206 318 279 45 67 chr4 112073336 112073515 -72215147 + MIR SINE MIR 82 256 -6 2080 122 17 0 chr4 112074303 112074598 -72214064 - AluSx SINE Alu -12 300 1 324 0 0 0 chr4 112075323 112075359 -72213303 + (TA)n Simple_repeat Simple_repeat 2 37 0 210 168 20 69 chr4 112076698 112076799 -72211863 + (TTATA)n Simple_repeat Simple_repeat 2 97 0 23 0 0 0 chr4 112077428 112077451 -72211211 + AT_rich Low_complexity Low_complexity 1 23 0 342 334 62 36 chr4 112078519 112078969 -72209693 - L1ME2 LINE L1 -216 5948 5484 225 169 48 78 chr4 112078977 112079143 -72209519 + (TATAA)n Simple_repeat Simple_repeat 3 163 0 287 271 62 52 chr4 112079158 112079368 -72209294 - L1ME2 LINE L1 -694 5468 5257 546 272 103 99 chr4 112079488 112080002 -72208660 - L1ME2 LINE L1 -984 5162 4647 1395 201 72 13 chr4 112080014 112080477 -72208185 + MER34 LTR ERV1 1 542 0 365 259 138 30 chr4 112080492 112080789 -72207873 - L1ME2 LINE L1 -1530 4616 4288 242 285 105 12 chr4 112080880 112081052 -72207610 - L1ME2 LINE L1 -2049 4097 3910 362 263 51 45 chr4 112081192 112081348 -72207314 - MER103 DNA DNA -2 164 8 2124 125 3 3 chr4 112081944 112082247 -72206415 + AluSx SINE Alu 1 303 -9 240 132 38 57 chr4 112083109 112083162 -72205500 + L1PA15-16 LINE L1 2596 2647 -4202 3507 141 9 125 chr4 112083636 112084418 -72204244 - LTR8 LTR ERV1 0 691 1 1267 155 77 14 chr4 112084735 112085135 -72203527 + LTR54B LTR ERV1 1 496 -2 255 31 0 0 chr4 112085943 112085975 -72202687 + (CA)n Simple_repeat Simple_repeat 1 32 0 350 331 43 22 chr4 112087007 112087146 -72201516 + MIR3 SINE MIR 33 174 -34 339 196 96 128 chr4 112087519 112087738 -72200924 + LTR48 LTR ERV1 576 787 0 270 250 92 17 chr4 112088573 112088693 -72199969 + MIR SINE MIR 87 215 -47 2138 121 3 0 chr4 112088802 112089100 -72199562 - AluSx SINE Alu -13 299 1 324 328 58 35 chr4 112089481 112089652 -72199010 - L1ME2 LINE L1 -2191 3955 3781 246 281 16 74 chr4 112090057 112090178 -72198484 - L2 LINE L2 0 3313 3200 320 305 9 0 chr4 112091655 112091760 -72196902 - MIR SINE MIR -14 248 143 1811 153 27 10 chr4 112091951 112092127 -72196535 - AluJo SINE Alu -6 306 121 279 0 0 0 chr4 112092127 112092158 -72196504 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1811 153 27 10 chr4 112092158 112092282 -72196380 - AluJo SINE Alu -191 121 1 3131 214 103 26 chr4 112092669 112094200 -72194462 + L1ME2 LINE L1 4497 6155 -9 602 325 15 5 chr4 112094220 112094423 -72194239 + MIR SINE MIR 18 222 -40 699 333 62 26 chr4 112094701 112095174 -72193488 + L2 LINE L2 2574 3068 -245 2153 182 0 3 chr4 112095234 112095591 -72193071 + MLT1A1 LTR MaLR 10 365 0 345 202 163 70 chr4 112095624 112095753 -72192909 + L2 LINE L2 3173 3313 0 2268 87 3 3 chr4 112097162 112097460 -72191202 - AluSg SINE Alu -12 298 1 236 337 53 0 chr4 112097563 112097658 -72191004 + MIR3 SINE MIR 55 154 -54 1899 151 3 7 chr4 112097697 112097995 -72190667 - AluJo SINE Alu -11 301 5 1650 148 12 77 chr4 112100746 112101070 -72187592 + AluJb SINE Alu 1 303 -9 2258 187 27 2 chr4 112102799 112103249 -72185413 + L1MB3 LINE L1 5722 6182 -1 22 35 0 0 chr4 112104475 112104504 -72184158 + AT_rich Low_complexity Low_complexity 1 29 0 1079 142 6 0 chr4 112105368 112105537 -72183125 - L1PA16 LINE L1 -5 6161 5992 1937 163 65 26 chr4 112105718 112106104 -72182558 + L1MB8 LINE L1 5631 6031 -147 195 288 50 0 chr4 112106109 112106189 -72182473 + L2 LINE L2 2329 2412 -902 279 194 281 0 chr4 112106266 112106405 -72182257 + L2 LINE L2 2456 2633 -681 3132 174 41 77 chr4 112106407 112107165 -72181497 + MER44D DNA MER2_type 2 604 -1 811 284 216 17 chr4 112107170 112107745 -72180917 + L2 LINE L2 2640 3313 0 192 378 20 31 chr4 112108765 112108863 -72179799 + MIR SINE MIR 6 102 -160 2159 96 3 7 chr4 112109423 112109716 -72178946 - AluY SINE Alu -19 292 1 226 287 99 40 chr4 112109791 112109892 -72178770 - L2 LINE L2 -1 3271 3165 290 352 52 20 chr4 112109894 112110241 -72178421 + L2 LINE L2 1884 2241 -1073 347 274 162 8 chr4 112110263 112110380 -72178282 - MIR SINE MIR -112 150 16 24 0 0 0 chr4 112112547 112112571 -72176091 + AT_rich Low_complexity Low_complexity 1 24 0 279 385 46 28 chr4 112113645 112113863 -72174799 + L2 LINE L2 3016 3237 -35 293 288 120 33 chr4 112114002 112114276 -72174386 + L1ME4a LINE L1 5605 5902 -219 23 68 0 0 chr4 112114407 112114451 -72174211 + AT_rich Low_complexity Low_complexity 1 44 0 24 0 0 0 chr4 112114739 112114763 -72173899 + AT_rich Low_complexity Low_complexity 1 24 0 240 259 52 0 chr4 112115571 112115629 -72173033 - L2 LINE L2 -1 3271 3211 1364 192 7 42 chr4 112116301 112116609 -72172053 + AluJo SINE Alu 1 297 -15 2253 103 0 13 chr4 112117066 112117377 -72171285 + AluSg SINE Alu 1 307 -3 33 43 0 0 chr4 112117788 112117835 -72170827 + AT_rich Low_complexity Low_complexity 1 47 0 308 317 137 35 chr4 112118624 112118851 -72169811 + MIR SINE MIR 11 260 -2 23 33 0 0 chr4 112118851 112118881 -72169781 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 112119217 112119245 -72169417 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 112119599 112119620 -72169042 + AT_rich Low_complexity Low_complexity 1 21 0 315 0 0 0 chr4 112120750 112120785 -72167877 + (CA)n Simple_repeat Simple_repeat 2 36 0 319 298 78 35 chr4 112122605 112122746 -72165916 - MIR SINE MIR -68 194 48 875 225 55 47 chr4 112122835 112123088 -72165574 - MIR SINE MIR 0 262 8 212 367 10 0 chr4 112123114 112123212 -72165450 - MIR3 SINE MIR -97 111 13 23 33 0 0 chr4 112125028 112125058 -72163604 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 112125580 112125608 -72163054 + AT_rich Low_complexity Low_complexity 1 28 0 351 179 120 128 chr4 112127315 112127432 -72161230 + L1MDb LINE L1 597 712 -5697 2135 104 3 13 chr4 112129602 112129900 -72158762 + AluSq SINE Alu 1 295 -18 635 236 45 20 chr4 112130115 112130314 -72158348 - MER31A LTR ERV1 -3 482 279 193 242 137 32 chr4 112131136 112131231 -72157431 + L2 LINE L2 3149 3253 -19 25 31 0 0 chr4 112131234 112131266 -72157396 + AT_rich Low_complexity Low_complexity 1 32 0 298 309 0 0 chr4 112131648 112131729 -72156933 - LTR16A1 LTR ERVL 0 457 377 1358 163 54 75 chr4 112131740 112132179 -72156483 - MER31A LTR ERV1 0 485 1 272 254 131 15 chr4 112132223 112132353 -72156309 - LTR16A1 LTR ERVL -131 326 182 396 302 116 0 chr4 112132606 112132778 -72155884 + L2 LINE L2 2222 2413 -901 235 321 0 0 chr4 112132825 112132878 -72155784 + L2 LINE L2 2561 2613 -701 429 352 92 11 chr4 112133049 112133322 -72155340 + L2 LINE L2 2520 2814 -500 322 262 26 112 chr4 112133370 112133507 -72155155 - L1M4 LINE L1 -1160 4986 4882 1826 146 37 7 chr4 112133507 112133802 -72154860 - AluSx SINE Alu -8 304 1 322 262 26 112 chr4 112133802 112133931 -72154731 - L1M4 LINE L1 -1264 4882 4743 1973 102 25 4 chr4 112134204 112134498 -72154164 - AluSx SINE Alu 0 302 3 620 281 104 25 chr4 112134766 112135078 -72153584 + MLT1J1 LTR MaLR 104 397 -12 21 0 0 0 chr4 112135301 112135322 -72153340 + AT_rich Low_complexity Low_complexity 1 21 0 288 0 0 0 chr4 112135754 112135786 -72152876 + (TG)n Simple_repeat Simple_repeat 2 33 0 23 78 0 0 chr4 112136001 112136052 -72152610 + AT_rich Low_complexity Low_complexity 1 51 0 33 73 0 0 chr4 112136359 112136427 -72152235 + AT_rich Low_complexity Low_complexity 1 68 0 378 308 71 22 chr4 112136643 112136825 -72151837 + MER110 LTR ERV1 215 405 -86 1552 164 16 39 chr4 112137145 112137455 -72151207 - AluJo SINE Alu -9 303 1 2047 106 0 4 chr4 112137466 112137739 -72150923 - AluY SINE Alu -9 302 31 1988 167 70 68 chr4 112137739 112138339 -72150323 + pTR5 LTR ERV1 743 1343 -1095 3854 146 153 0 chr4 112138355 112139068 -72149594 + LTR12 LTR ERV1 5 826 0 247 321 60 0 chr4 112139312 112139396 -72149266 - MIR SINE MIR -82 180 92 418 268 174 7 chr4 112139489 112139627 -72149035 - MIR SINE MIR -89 173 13 1214 127 0 0 chr4 112140181 112140347 -72148315 - AluSg/x SINE Alu -13 299 134 888 247 56 36 chr4 112140701 112140952 -72147710 - MER21B LTR ERV1 -142 721 466 1469 236 64 41 chr4 112141115 112141551 -72147111 - MER21B LTR ERV1 -402 461 16 2569 136 5 8 chr4 112142292 112142689 -72145973 + MER61B LTR ERV1 1 396 -29 415 304 128 0 chr4 112144236 112144384 -72144278 + MER91A DNA MER1_type 26 192 -4 1819 176 13 3 chr4 112144600 112144906 -72143756 - AluJb SINE Alu -1 311 3 724 159 20 104 chr4 112145203 112145404 -72143258 + MER53 DNA DNA 2 185 -4 1876 134 38 51 chr4 112145447 112145945 -72142717 + MER34B LTR ERV1 1 546 -19 29 0 0 0 chr4 112147007 112147036 -72141626 + AT_rich Low_complexity Low_complexity 1 29 0 452 228 49 0 chr4 112147726 112147849 -72140813 - MIR SINE MIR -11 251 123 1475 310 91 51 chr4 112148613 112148775 -72139887 - L2 LINE L2 -2106 1208 1054 1463 216 3 3 chr4 112148775 112149057 -72139605 + AluJo SINE Alu 1 282 -30 1475 310 91 51 chr4 112149057 112149655 -72139007 - L2 LINE L2 -2260 1054 404 2297 97 0 7 chr4 112149655 112149963 -72138699 + AluSg SINE Alu 1 306 -4 1475 310 91 51 chr4 112149963 112150088 -72138574 - L2 LINE L2 -2910 404 286 2348 91 6 6 chr4 112200099 112200429 -72088233 + L1PA10 LINE L1 5829 6158 -10 25 31 0 0 chr4 112200556 112200588 -72088074 + AT_rich Low_complexity Low_complexity 1 32 0 6325 163 39 36 chr4 112202338 112202545 -72086117 + LTR35-int LTR ERV1 4104 4309 -1637 2314 106 0 0 chr4 112202545 112202847 -72085815 - AluSq SINE Alu -11 302 1 6325 163 39 36 chr4 112202847 112203931 -72084731 + LTR35-int LTR ERV1 4309 5398 -548 435 157 72 105 chr4 112204067 112204220 -72084442 + LTR35-int LTR ERV1 5907 6054 -277 27 0 0 0 chr4 112204346 112204373 -72084289 + AT_rich Low_complexity Low_complexity 1 27 0 284 266 58 50 chr4 112204495 112204634 -72084028 + LTR35-int LTR ERV1 4658 4797 -1 3111 189 24 21 chr4 112204635 112205250 -72083412 + LTR35 LTR ERV1 1 617 -1 473 293 53 0 chr4 112205341 112205491 -72083171 + MIR SINE MIR 97 254 -8 2433 87 0 3 chr4 112205724 112206035 -72082627 + AluSx SINE Alu 1 310 -2 27 62 0 0 chr4 112206078 112206126 -72082536 + AT_rich Low_complexity Low_complexity 1 48 0 33771 69 10 7 chr4 112206240 112210564 -72078098 - HERVL-A1 LTR ERVL -1316 4338 1 2274 84 108 6 chr4 112210564 112210907 -72077755 - MLT2A1 LTR ERVL 0 444 67 4749 21 0 4 chr4 112211092 112211649 -72077013 + L1PA2 LINE L1 5597 6151 -4 25 31 0 0 chr4 112212190 112212222 -72076440 + AT_rich Low_complexity Low_complexity 1 32 0 8623 206 17 31 chr4 112212405 112214528 -72074134 + L1MA5 LINE L1 2224 4316 -1830 2553 168 62 62 chr4 112214526 112215293 -72073369 + L1MA5 LINE L1 5451 6296 -4 * 208 294 0 29 chr4 112215797 112215865 -72072797 - L2 LINE L2 -2 3311 3246 294 317 20 10 chr4 112216540 112216641 -72072021 + L2 LINE L2 3188 3289 -24 21 36 0 0 chr4 112217078 112217106 -72071556 + AT_rich Low_complexity Low_complexity 1 28 0 8743 120 6 36 chr4 112217823 112219374 -72069288 + L1P4 LINE L1 3961 5460 -708 7286 31 13 47 chr4 112219374 112220422 -72068240 - L1PA3 LINE L1 -2 6153 5116 8743 120 6 36 chr4 112220422 112220469 -72068193 + L1P4 LINE L1 5460 5507 -661 1315 150 52 38 chr4 112220620 112220887 -72067775 - MER57-int LTR ERV1 -1994 4269 3999 424 245 43 7 chr4 112220881 112221020 -72067642 - MER57-int LTR ERV1 -4613 1985 1842 * 4780 201 66 78 chr4 112221103 112221717 -72066945 - MER57-int LTR ERV1 -4244 3293 2673 190 0 67 0 chr4 112221717 112221747 -72066915 + (TA)n Simple_repeat Simple_repeat 2 33 0 4780 201 66 78 chr4 112221747 112222670 -72065992 - MER57-int LTR ERV1 -4864 2673 767 3060 165 22 53 chr4 112222639 112223442 -72065220 - MER57-int LTR ERV1 -4450 1496 331 * 427 273 59 115 chr4 112223732 112223985 -72064677 - MER57-int LTR ERV1 -5300 1294 408 3156 155 9 36 chr4 112223999 112224560 -72064102 - LTR35 LTR ERV1 0 618 73 2199 203 81 93 chr4 112225200 112225988 -72062674 + MER4E LTR ERV1 1 779 0 2231 23 0 0 chr4 112226266 112226579 -72062083 + L1PA2 LINE L1 5895 6207 0 1615 152 158 15 chr4 112226649 112226977 -72061685 - THE1C LTR MaLR 0 375 1 352 231 185 23 chr4 112226977 112227093 -72061569 - MLT1H LTR MaLR -412 137 1 22 0 0 0 chr4 112227378 112227400 -72061262 + AT_rich Low_complexity Low_complexity 1 22 0 422 301 103 34 chr4 112227550 112227685 -72060977 - L1ME LINE L1 -543 5578 5454 2109 129 0 23 chr4 112227685 112227994 -72060668 - AluSx SINE Alu -8 304 3 422 301 103 34 chr4 112227994 112228150 -72060512 - L1ME LINE L1 -667 5454 5267 198 0 0 0 chr4 112228888 112228910 -72059752 + (A)n Simple_repeat Simple_repeat 1 22 0 184 402 72 0 chr4 112228910 112229104 -72059558 + L2 LINE L2 102 309 -3005 1205 171 9 14 chr4 112229108 112229325 -72059337 - AluJo SINE Alu -19 293 78 1786 317 148 26 chr4 112229325 112230418 -72058244 + L2 LINE L2 295 1520 -1794 2738 250 44 40 chr4 112230422 112231753 -72056909 + L1ME3A LINE L1 4672 5998 -172 349 302 65 14 chr4 112232222 112232361 -72056301 + MIR SINE MIR 107 252 -10 343 311 81 27 chr4 112232402 112232550 -72056112 + MER5A DNA MER1_type 33 188 -1 895 78 78 0 chr4 112233002 112233130 -72055532 - MER85 DNA T2_type -1 138 1 194 0 39 0 chr4 112234900 112234926 -72053736 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 206 244 22 0 chr4 112237292 112237337 -72051325 - L2 LINE L2 -4 3309 3264 1058 214 132 36 chr4 112237943 112238246 -72050416 + MER2 DNA MER2_type 14 345 0 191 358 158 0 chr4 112238313 112238433 -72050229 - L2 LINE L2 0 3272 3134 2738 99 0 0 chr4 112240915 112241278 -72047384 + THE1B LTR MaLR 2 364 0 2776 121 75 3 chr4 112241278 112241878 -72046784 + THE1B-int LTR MaLR 1 706 -945 858 188 106 62 chr4 112243052 112243260 -72045402 + AluJb SINE Alu 3 219 -93 218 265 15 30 chr4 112243282 112243414 -72045248 + A-rich Low_complexity Low_complexity 2 131 0 1691 175 20 14 chr4 112244614 112244906 -72043756 + AluJo SINE Alu 1 294 -18 415 321 45 87 chr4 112245560 112245940 -72042722 + L1MEd LINE L1 3 366 -5753 2348 216 39 37 chr4 112246001 112246566 -72042096 + MER74B LTR ERVL 57 622 0 303 289 119 47 chr4 112246637 112246872 -72041790 + L1MEd LINE L1 474 725 -5394 2204 89 0 35 chr4 112247421 112247735 -72040927 - AluSg1 SINE Alu -6 303 1 2130 149 46 0 chr4 112248623 112248971 -72039691 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr4 112249180 112249201 -72039461 + AT_rich Low_complexity Low_complexity 1 21 0 330 333 51 23 chr4 112250682 112250859 -72037803 + L1MC4 LINE L1 6766 6947 -1095 2230 105 13 3 chr4 112251007 112251311 -72037351 + AluSq SINE Alu 5 311 -2 2664 102 5 8 chr4 112251326 112251700 -72036962 - THE1C LTR MaLR 0 375 3 634 105 0 0 chr4 112251741 112251827 -72036835 + L1P LINE L1 11 96 -6050 297 306 83 35 chr4 112251948 112252092 -72036570 - L3 LINE CR1 -89 1488 1338 220 253 149 23 chr4 112252600 112252687 -72035975 - MIR3 SINE MIR -48 160 63 2803 7 0 0 chr4 112253782 112254089 -72034573 + AluYb8 SINE Alu 1 307 -11 24 0 0 0 chr4 112254270 112254294 -72034368 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr4 112255261 112255285 -72033377 + AT_rich Low_complexity Low_complexity 1 24 0 268 207 0 85 chr4 112255477 112255559 -72033103 - L1ME LINE L1 -473 5691 5617 1125 128 0 0 chr4 112255565 112255745 -72032917 + (TA)n Simple_repeat Simple_repeat 1 180 0 226 259 35 0 chr4 112255762 112255820 -72032842 - L1ME3A LINE L1 -16 6154 6095 29 0 0 0 chr4 112256266 112256295 -72032367 + AT_rich Low_complexity Low_complexity 1 29 0 254 50 25 0 chr4 112257548 112257588 -72031074 + (TA)n Simple_repeat Simple_repeat 2 42 0 2307 129 12 0 chr4 112258212 112258546 -72030116 - MER7A DNA MER2_type -9 337 2 222 122 61 0 chr4 112258560 112258609 -72030053 + (TA)n Simple_repeat Simple_repeat 1 52 0 235 295 0 0 chr4 112259148 112259226 -72029436 + MIR SINE MIR 129 206 -56 770 208 7 0 chr4 112259264 112259408 -72029254 + MLT1B LTR MaLR 1 145 -245 293 196 0 0 chr4 112259403 112259454 -72029208 + MLT1B LTR MaLR 336 386 -4 * 357 0 57 0 chr4 112260214 112260267 -72028395 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 22 0 0 0 chr4 112261707 112261729 -72026933 + AT_rich Low_complexity Low_complexity 1 22 0 253 328 35 78 chr4 112261735 112261851 -72026811 + L2 LINE L2 3160 3270 -2 595 355 138 28 chr4 112262653 112263711 -72024951 + L2 LINE L2 207 1380 -1934 1305 356 58 42 chr4 112263712 112264882 -72023780 + L2 LINE L2 1801 2988 -325 340 336 35 9 chr4 112264877 112264993 -72023669 + L2 LINE L2 3195 3313 0 * 251 296 71 47 chr4 112265010 112265179 -72023483 + L2 LINE L2 3012 3184 -129 266 349 23 0 chr4 112265271 112265357 -72023305 + L2 LINE L2 3184 3271 -1 2109 262 50 10 chr4 112265989 112266612 -72022050 - L1ME3A LINE L1 -100 6070 5423 1510 279 111 18 chr4 112266639 112267548 -72021114 - L1ME3A LINE L1 -778 5368 4375 24 53 0 0 chr4 112267727 112267765 -72020897 + AT_rich Low_complexity Low_complexity 1 38 0 190 342 13 38 chr4 112267788 112267867 -72020795 - L2 LINE L2 0 3272 3196 491 307 0 8 chr4 112268240 112268367 -72020295 + L2 LINE L2 3187 3312 -1 23 33 0 0 chr4 112268933 112268963 -72019699 + AT_rich Low_complexity Low_complexity 1 30 0 628 124 70 151 chr4 112269155 112269341 -72019321 + AluSg/x SINE Alu 128 298 -14 2616 134 17 42 chr4 112269341 112269552 -72019110 - L1MB5 LINE L1 -6 6168 5953 2149 94 13 13 chr4 112269552 112269861 -72018801 - AluSp SINE Alu -2 311 3 2616 134 17 42 chr4 112269861 112270125 -72018537 - L1MB5 LINE L1 -221 5953 5705 184 203 0 85 chr4 112270225 112270284 -72018378 + L3 LINE CR1 946 999 -578 21 82 0 0 chr4 112270420 112270469 -72018193 + AT_rich Low_complexity Low_complexity 1 49 0 1127 137 103 34 chr4 112270768 112270972 -72017690 + AluJo SINE Alu 85 302 -10 980 257 111 0 chr4 112271581 112271969 -72016693 - L1MB5 LINE L1 -533 5633 5198 381 284 73 39 chr4 112271966 112272170 -72016492 - L1MB8 LINE L1 -3 6175 5965 * 501 286 10 44 chr4 112273608 112273844 -72014818 + HERVL40 LTR ERVL 623 1615 -2184 384 341 63 33 chr4 112275071 112275373 -72013289 - L2 LINE L2 0 3313 3003 486 272 47 56 chr4 112275503 112275716 -72012946 + L2 LINE L2 3103 3313 0 614 271 24 3 chr4 112275919 112276130 -72012532 + L1ME1 LINE L1 5675 5885 -298 189 290 110 50 chr4 112276705 112276805 -72011857 + L2 LINE L2 3147 3252 -20 420 255 52 46 chr4 112277069 112277222 -72011440 - MER103 DNA DNA 0 166 13 285 167 74 0 chr4 112277271 112277325 -72011337 - HsTC2 DNA Tc2 -17 1881 1824 344 102 0 0 chr4 112277971 112278020 -72010642 + MADE1 DNA Mariner 32 80 0 30 27 0 0 chr4 112278742 112278779 -72009883 + AT_rich Low_complexity Low_complexity 1 37 0 234 296 0 23 chr4 112279315 112279403 -72009259 + CT-rich Low_complexity Low_complexity 2 87 0 1998 113 3 17 chr4 112280932 112281223 -72007439 - AluSx SINE Alu -25 287 1 2239 64 0 17 chr4 112281485 112281782 -72006880 - AluY SINE Alu -19 292 1 24 53 0 0 chr4 112282191 112282229 -72006433 + AT_rich Low_complexity Low_complexity 1 38 0 2058 115 7 0 chr4 112282654 112282933 -72005729 - AluSx SINE Alu 0 312 32 683 233 75 6 chr4 112283629 112283788 -72004874 + MIR SINE MIR 16 185 -77 276 296 41 10 chr4 112283907 112284005 -72004657 - MIR SINE MIR -56 206 106 350 364 148 8 chr4 112284120 112284477 -72004185 + L3 LINE CR1 118 524 -1053 2850 131 4 2 chr4 112284644 112285094 -72003568 + L1PA15 LINE L1 5699 6149 -16 656 239 162 4 chr4 112285112 112285359 -72003303 + L1MC4 LINE L1 7614 7899 -143 21 36 0 0 chr4 112285438 112285466 -72003196 + AT_rich Low_complexity Low_complexity 1 28 0 183 385 84 0 chr4 112285584 112285667 -72002995 + L3 LINE CR1 994 1083 -494 459 186 47 31 chr4 112285668 112285797 -72002865 - Charlie7 DNA MER1_type -48 2564 2434 * 501 183 19 10 chr4 112285784 112285888 -72002774 - Charlie7 DNA MER1_type -2507 105 1 337 380 10 21 chr4 112286007 112286199 -72002463 - L2 LINE L2 -703 2611 2422 478 308 205 21 chr4 112286217 112286412 -72002250 + L3 LINE CR1 1297 1543 -34 2290 129 21 13 chr4 112286412 112286784 -72001878 + THE1C LTR MaLR 1 375 0 478 308 205 21 chr4 112286784 112286822 -72001840 + L3 LINE CR1 1543 1573 -4 27 87 0 0 chr4 112286940 112287009 -72001653 + AT_rich Low_complexity Low_complexity 1 69 0 255 207 190 33 chr4 112287767 112287888 -72000774 - L2 LINE L2 -47 3266 3127 614 325 93 35 chr4 112288304 112288766 -71999896 - L2 LINE L2 -524 2790 2302 463 289 0 20 chr4 112288794 112288943 -71999719 + L1MA9 LINE L1 6129 6274 -38 381 296 206 28 chr4 112289092 112289481 -71999181 - L2 LINE L2 -1066 2248 1791 368 246 131 39 chr4 112289600 112289730 -71998932 + L2 LINE L2 3172 3313 0 252 0 0 0 chr4 112289735 112289763 -71998899 + (TG)n Simple_repeat Simple_repeat 1 28 0 2210 113 0 0 chr4 112290972 112291272 -71997390 - AluSg SINE Alu -10 300 1 21 0 0 0 chr4 112292525 112292546 -71996116 + AT_rich Low_complexity Low_complexity 1 21 0 219 303 22 22 chr4 112292753 112292842 -71995820 - L3b LINE CR1 -227 1356 1268 409 259 99 30 chr4 112293254 112293385 -71995277 + MIR SINE MIR 18 157 -105 553 243 5 49 chr4 112294825 112294977 -71993685 + MIR SINE MIR 95 240 -22 2011 197 69 13 chr4 112295085 112295562 -71993100 + Charlie1 DNA MER1_type 2257 2760 -1 21 0 0 0 chr4 112295788 112295809 -71992853 + AT_rich Low_complexity Low_complexity 1 21 0 923 188 0 0 chr4 112295809 112295958 -71992704 - AluJb SINE Alu -26 286 138 25 0 0 0 chr4 112296091 112296116 -71992546 + AT_rich Low_complexity Low_complexity 1 25 0 340 310 78 9 chr4 112296356 112296472 -71992190 + MIR SINE MIR 90 213 -49 203 299 26 13 chr4 112297492 112297569 -71991093 + MIR3 SINE MIR 130 207 -1 324 0 0 0 chr4 112298085 112298121 -71990541 + (CA)n Simple_repeat Simple_repeat 2 37 0 190 274 126 21 chr4 112299001 112299096 -71989566 + MIR SINE MIR 93 197 -65 1856 184 49 34 chr4 112299848 112300256 -71988406 + MLT2D LTR ERVL 1 414 0 673 179 13 62 chr4 112300658 112300820 -71987842 - MER3 DNA MER1_type -61 148 32 249 304 157 9 chr4 112300896 112301011 -71987651 + MIR SINE MIR 31 162 -100 393 122 0 0 chr4 112301024 112301098 -71987564 + (TA)n Simple_repeat Simple_repeat 1 74 0 2884 70 25 8 chr4 112301103 112301500 -71987162 - MLT2A1 LTR ERVL -40 404 1 705 325 133 25 chr4 112303481 112304218 -71984444 - L2 LINE L2 -5 3308 2490 297 218 54 102 chr4 112304798 112305082 -71983580 + LTR37A LTR ERV1 197 426 0 1611 169 29 14 chr4 112305177 112305455 -71983207 - AluJb SINE Alu -30 282 1 236 30 30 0 chr4 112306578 112306611 -71982051 + (CA)n Simple_repeat Simple_repeat 2 35 0 1662 209 3 0 chr4 112307213 112307524 -71981138 + AluJb SINE Alu 1 312 0 557 150 30 15 chr4 112307528 112307661 -71981001 + GA-rich Low_complexity Low_complexity 3 137 0 2083 138 0 0 chr4 112307921 112308212 -71980450 + AluSx SINE Alu 1 291 -21 3269 63 11 7 chr4 112308921 112309364 -71979298 + L1PA7 LINE L1 5710 6154 0 310 313 61 0 chr4 112309669 112309800 -71978862 - MIR SINE MIR -15 247 109 191 111 0 28 chr4 112310588 112310624 -71978038 + (GGGAGA)n Simple_repeat Simple_repeat 5 39 0 1536 301 198 23 chr4 112311151 112312050 -71976612 - L3 LINE CR1 -121 1456 401 955 182 0 0 chr4 112312071 112312225 -71976437 - FAM SINE Alu -8 41 1 326 302 249 5 chr4 112312987 112313192 -71975470 - MIR SINE MIR 0 262 8 207 100 0 0 chr4 112315004 112315034 -71973628 + (T)n Simple_repeat Simple_repeat 1 30 0 334 250 13 0 chr4 112315683 112315759 -71972903 - MIR SINE MIR -106 156 80 816 178 67 0 chr4 112316044 112316179 -71972483 - AluJb SINE Alu -91 221 78 269 376 168 20 chr4 112316449 112316843 -71971819 - L2 LINE L2 -3 3269 2818 261 0 0 0 chr4 112321913 112321942 -71966720 + (TG)n Simple_repeat Simple_repeat 2 30 0 1272 295 96 34 chr4 112322513 112323255 -71965407 + L2 LINE L2 2445 3247 -66 2606 96 5 11 chr4 112323255 112323629 -71965033 - THE1C LTR MaLR 0 375 4 1272 295 96 34 chr4 112323629 112323677 -71964985 + L2 LINE L2 3247 3291 -22 206 62 31 0 chr4 112323678 112323710 -71964952 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 241 227 82 21 chr4 112323846 112323943 -71964719 + MIR SINE MIR 102 204 -58 511 291 63 6 chr4 112324718 112324876 -71963786 + MER5A DNA MER1_type 1 167 -22 363 248 142 0 chr4 112325419 112325532 -71963130 + MIR SINE MIR 45 173 -89 41 58 0 0 chr4 112326051 112326120 -71962542 + AT_rich Low_complexity Low_complexity 1 69 0 638 296 140 34 chr4 112326287 112326787 -71961875 - L2 LINE L2 -1607 1707 1155 202 324 0 14 chr4 112327121 112327192 -71961470 + MIR3 SINE MIR 135 204 -4 229 260 158 51 chr4 112327406 112327583 -71961079 - MIR SINE MIR -13 249 54 631 229 20 7 chr4 112328083 112328236 -71960426 - MIR SINE MIR -26 236 82 274 348 82 17 chr4 112328602 112328835 -71959827 - L2 LINE L2 -456 2858 2611 22 0 0 0 chr4 112329262 112329284 -71959378 + AT_rich Low_complexity Low_complexity 1 22 0 21 82 0 0 chr4 112329427 112329476 -71959186 + AT_rich Low_complexity Low_complexity 1 49 0 277 362 11 45 chr4 112329477 112329703 -71958959 - MIR3 SINE MIR -47 215 3 222 118 0 0 chr4 112329723 112329757 -71958905 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 195 347 77 77 chr4 112329759 112330122 -71958540 - L2 LINE L2 -14 3258 2896 258 277 69 50 chr4 112330384 112330485 -71958177 + MIR SINE MIR 46 148 -114 25 51 0 0 chr4 112330491 112330530 -71958132 + AT_rich Low_complexity Low_complexity 1 39 0 2002 160 0 0 chr4 112330729 112331041 -71957621 + AluJb SINE Alu 1 312 0 23 0 0 0 chr4 112331083 112331106 -71957556 + AT_rich Low_complexity Low_complexity 1 23 0 216 0 0 0 chr4 112332349 112332373 -71956289 + (A)n Simple_repeat Simple_repeat 1 24 0 1010 191 10 10 chr4 112332589 112332788 -71955874 - AluJo SINE Alu -36 276 78 401 311 101 40 chr4 112332788 112333016 -71955646 + L2 LINE L2 295 536 -2778 2226 123 3 0 chr4 112333322 112333631 -71955031 - AluSq SINE Alu 0 313 4 275 314 116 8 chr4 112333644 112333765 -71954897 + MER5A DNA MER1_type 56 189 0 19769 29 0 8 chr4 112334277 112336700 -71951962 + L1P LINE L1 1877 4279 -1867 21 82 0 0 chr4 112338490 112338539 -71950123 + AT_rich Low_complexity Low_complexity 1 49 0 21 82 0 0 chr4 112338596 112338645 -71950017 + AT_rich Low_complexity Low_complexity 1 49 0 215 316 29 65 chr4 112339307 112339446 -71949216 + MIR3 SINE MIR 15 148 -60 708 320 159 34 chr4 112339825 112340303 -71948359 - MER115 DNA AcHobo -146 547 10 265 292 92 39 chr4 112340612 112340742 -71947920 - L2 LINE L2 -5 3308 3172 2365 90 3 0 chr4 112340999 112341298 -71947364 + AluSp SINE Alu 1 300 -13 2477 97 27 19 chr4 112341578 112341950 -71946712 - THE1C LTR MaLR 0 375 1 866 221 0 0 chr4 112342020 112342183 -71946479 - FRAM SINE Alu -13 163 1 449 259 0 7 chr4 112342426 112342569 -71946093 + GA-rich Low_complexity Low_complexity 3 144 0 571 260 108 85 chr4 112342793 112343300 -71945362 + MLT1H LTR MaLR 15 533 -16 712 257 91 14 chr4 112344024 112344234 -71944428 - MIR SINE MIR -8 254 29 260 242 73 48 chr4 112344241 112344365 -71944297 - MIR SINE MIR -3 259 133 21 0 0 0 chr4 112344836 112344857 -71943805 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 112345278 112345299 -71943363 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 112345778 112345808 -71942854 + AT_rich Low_complexity Low_complexity 1 30 0 409 298 0 10 chr4 112346908 112347012 -71941650 + L2 LINE L2 3165 3267 -5 1446 229 72 21 chr4 112348272 112348691 -71939971 - L1MCc LINE L1 -5961 462 23 635 253 13 0 chr4 112349182 112349332 -71939330 - MLT1F LTR MaLR -2 540 389 451 241 143 15 chr4 112349437 112349570 -71939092 - MLT1E LTR MaLR -443 150 1 2035 151 40 3 chr4 112349846 112350197 -71938465 + THE1B LTR MaLR 1 364 0 235 308 31 0 chr4 112350493 112350558 -71938104 - MIR3 SINE MIR -32 176 110 225 259 185 12 chr4 112350583 112350664 -71937998 + L2 LINE L2 2325 2419 -895 360 294 145 42 chr4 112350750 112350964 -71937698 + L2 LINE L2 2615 2850 -464 226 167 0 56 chr4 112350980 112351034 -71937628 + LTR30 LTR ERV1 574 624 -98 2409 95 0 0 chr4 112351034 112351371 -71937291 + pTR5 LTR ERV1 52 388 -2050 633 349 88 29 chr4 112351371 112351755 -71936907 + L2 LINE L2 2864 3270 -2 595 234 41 0 chr4 112352948 112353093 -71935569 + L1MEc LINE L1 45 195 -6201 311 319 52 7 chr4 112353402 112353537 -71935125 - L1M4c LINE L1 -5058 2509 2369 24071 115 13 52 chr4 112353538 112360029 -71928633 - L1PA7 LINE L1 0 6154 1 413 224 20 10 chr4 112360480 112360578 -71928084 + MIR SINE MIR 93 191 -71 2133 40 44 11 chr4 112362272 112362544 -71926118 + AluY SINE Alu 29 309 -2 579 164 146 0 chr4 112362556 112362666 -71925996 + FLAM_C SINE Alu 1 126 -7 202 246 15 31 chr4 112362868 112362933 -71925729 + MIR SINE MIR 100 163 -99 21 0 0 0 chr4 112363065 112363086 -71925576 + AT_rich Low_complexity Low_complexity 1 21 0 456 110 44 22 chr4 112364132 112364223 -71924439 + L1MA9 LINE L1 6220 6312 0 1542 228 42 23 chr4 112415553 112415939 -71872723 - L1M4c LINE L1 -7168 397 5 189 0 0 0 chr4 112416129 112416150 -71872512 + (T)n Simple_repeat Simple_repeat 1 21 0 21 57 0 0 chr4 112416377 112416412 -71872250 + AT_rich Low_complexity Low_complexity 1 35 0 28 29 0 0 chr4 112417390 112417425 -71871237 + AT_rich Low_complexity Low_complexity 1 35 0 2671 20 0 0 chr4 112417447 112417749 -71870913 - AluYa5 SINE Alu -9 302 1 250 303 131 36 chr4 112418735 112418956 -71869706 + L2 LINE L2 1570 1811 -1503 480 168 420 0 chr4 112419526 112419657 -71869005 - MER5A DNA MER1_type 0 189 4 201 176 0 0 chr4 112420510 112420544 -71868118 + (TAA)n Simple_repeat Simple_repeat 1 34 0 2356 213 91 15 chr4 112421019 112421681 -71866981 + L1MC4a LINE L1 7097 7808 0 490 163 76 0 chr4 112423799 112423891 -71864771 + MER4A LTR ERV1 1 99 -565 1683 132 19 73 chr4 112423891 112424254 -71864408 + MER4A LTR ERV1 263 664 0 435 324 14 7 chr4 112425256 112425395 -71863267 + MER5A DNA MER1_type 7 146 -43 242 286 98 38 chr4 112425475 112425608 -71863054 + MIR SINE MIR 78 218 -44 28 61 0 0 chr4 112425617 112425666 -71862996 + AT_rich Low_complexity Low_complexity 1 49 0 320 345 65 0 chr4 112426025 112426164 -71862498 + L3 LINE CR1 401 548 -1029 1536 170 3 58 chr4 112426281 112426611 -71862051 + AluJb SINE Alu 1 312 0 242 250 67 0 chr4 112426726 112426786 -71861876 + MER91A DNA MER1_type 117 180 -16 869 214 22 6 chr4 112427352 112427530 -71861132 - Tigger4(Zombi) DNA MER2_type -2550 181 1 262 176 24 94 chr4 112427458 112427543 -71861119 + MER46A DNA MER2_type 75 153 -83 * 638 256 103 75 chr4 112427643 112428206 -71860456 + HAL1b LINE L1 256 834 -514 766 296 73 36 chr4 112428574 112429013 -71859649 - MLT1L LTR MaLR -13 602 148 28 29 0 0 chr4 112429624 112429659 -71859003 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr4 112430137 112430167 -71858495 + AT_rich Low_complexity Low_complexity 1 30 0 291 240 52 0 chr4 112430256 112430352 -71858310 - LTR37B LTR ERV1 0 468 368 239 289 66 7 chr4 112430382 112430534 -71858128 + L1MC4 LINE L1 5255 5415 -2393 1547 75 10 0 chr4 112430637 112430836 -71857826 + AluYa5 SINE Alu 99 299 -12 24 0 0 0 chr4 112431202 112431226 -71857436 + AT_rich Low_complexity Low_complexity 1 24 0 2072 178 72 8 chr4 112431868 112432268 -71856394 - MSTB LTR MaLR 0 426 1 238 203 31 16 chr4 112432668 112432732 -71855930 - L1ME LINE L1 -531 5590 5526 1686 195 50 18 chr4 112432798 112433182 -71855480 - MSTD LTR MaLR 0 396 1 5959 210 50 13 chr4 112433531 112434838 -71853824 + L1PA13 LINE L1 1 1356 -5431 2102 194 30 22 chr4 112434832 112435328 -71853334 + L1PA13 LINE L1 3791 4290 -2507 * 3855 175 18 3 chr4 112435428 112436158 -71852504 + L1PA13 LINE L1 5262 6002 -795 2132 123 0 6 chr4 112436181 112436513 -71852149 - L1PB1 LINE L1 -2 6149 5820 3053 118 60 10 chr4 112436649 112437165 -71851497 + L1PA13 LINE L1 6269 6810 -4 182 205 0 26 chr4 112437184 112437223 -71851439 - L2 LINE L2 -8 3305 3268 345 267 43 43 chr4 112437244 112437431 -71851231 + L1MC4 LINE L1 5694 5880 -1928 2178 66 33 0 chr4 112437616 112437945 -71850717 - AluY SINE Alu 0 338 1 200 271 12 71 chr4 112438291 112438376 -71850286 + L2 LINE L2 2959 3038 -234 498 343 126 32 chr4 112438714 112438840 -71849822 + L2 LINE L2 2439 2552 -762 1148 228 15 66 chr4 112438840 112439234 -71849428 - MLT1A2 LTR MaLR 0 374 1 498 343 126 32 chr4 112439234 112439600 -71849062 + L2 LINE L2 2552 2977 -337 305 300 33 8 chr4 112439651 112439771 -71848891 + L2 LINE L2 3176 3298 -15 250 290 27 109 chr4 112440724 112440907 -71847755 - L2 LINE L2 -1961 1353 1186 2117 116 0 20 chr4 112441830 112442133 -71846529 + AluSx SINE Alu 1 297 -15 644 301 25 15 chr4 112444192 112444388 -71844274 - MIR SINE MIR -18 244 47 312 229 21 31 chr4 112444959 112445055 -71843607 + L1MC4 LINE L1 6609 6703 -1339 835 128 13 0 chr4 112445059 112445296 -71843366 + (TA)n Simple_repeat Simple_repeat 1 240 0 8306 137 26 16 chr4 112445313 112445788 -71842874 - Tigger4(Zombi) DNA MER2_type -10 2721 2253 1918 149 0 0 chr4 112445788 112446099 -71842563 + AluSx SINE Alu 1 311 0 8306 137 26 16 chr4 112446099 112447017 -71841645 - Tigger4(Zombi) DNA MER2_type -478 2253 1310 4184 232 54 38 chr4 112447124 112448645 -71840017 - L1PBb LINE L1 -4199 2004 354 275 266 31 47 chr4 112448852 112448980 -71839682 - L1PBb LINE L1 -5930 274 149 966 65 8 0 chr4 112450122 112450245 -71838417 - AluSp/q SINE Alu -7 306 183 1454 249 132 57 chr4 112451262 112451844 -71836818 - MLT1E2 LTR MaLR 0 626 1 2283 199 25 13 chr4 112452352 112452829 -71835833 - MER31A LTR ERV1 -2 483 1 3653 176 59 8 chr4 112453369 112454175 -71834487 + L1MB1 LINE L1 5209 6055 -113 585 137 43 8 chr4 112454275 112454392 -71834270 + L1MB1 LINE L1 6042 6162 -6 195 42 0 0 chr4 112454541 112454565 -71834097 + (TTA)n Simple_repeat Simple_repeat 2 25 0 964 157 0 62 chr4 112454599 112454809 -71833853 - L1MA9 LINE L1 -1 6311 6115 1215 148 5 0 chr4 112454812 112455008 -71833654 - L1MA9 LINE L1 -726 5586 5390 1081 179 93 37 chr4 112455008 112455254 -71833408 + MSTA LTR MaLR 1 260 -168 872 159 53 0 chr4 112455458 112455609 -71833053 + MSTA LTR MaLR 268 426 -2 3672 186 26 4 chr4 112455609 112456342 -71832320 - L1MA9 LINE L1 -750 5396 4648 2528 246 22 11 chr4 112456341 112457070 -71831592 + L1 LINE L1 2370 3106 -3040 * 8018 219 33 28 chr4 112457122 112459514 -71829148 + L1PB4 LINE L1 2742 5225 -1634 780 183 25 76 chr4 112459514 112459711 -71828951 + MLT1A1 LTR MaLR 134 320 -45 8018 219 33 28 chr4 112459711 112461354 -71827308 + L1PB4 LINE L1 5225 6858 -1 2053 312 101 10 chr4 112461350 112461680 -71826982 + L1 LINE L1 3868 4166 -1980 * 1532 196 18 18 chr4 112461680 112461961 -71826701 + AluJb SINE Alu 1 281 -31 2053 312 101 10 chr4 112461961 112462342 -71826320 + L1 LINE L1 4166 4644 -1502 367 241 80 22 chr4 112462909 112463046 -71825616 + MIR SINE MIR 114 258 -4 1669 169 0 14 chr4 112464191 112464470 -71824192 + AluJo SINE Alu 36 310 -2 3856 160 4 32 chr4 112465416 112465847 -71822815 - L1PB4 LINE L1 -38 6834 6392 201 74 0 0 chr4 112465847 112465874 -71822788 + (CA)n Simple_repeat Simple_repeat 2 28 0 3856 160 4 32 chr4 112465874 112466890 -71821772 - L1PB4 LINE L1 -480 6392 5479 1789 201 3 3 chr4 112466891 112467244 -71821418 - L1PB4 LINE L1 -3406 3456 3104 2252 46 0 4 chr4 112467247 112467508 -71821154 - AluY SINE Alu -15 296 37 394 140 0 0 chr4 112467696 112467753 -71820909 - AluY SINE Alu -242 57 1 10091 119 51 7 chr4 112467799 112469959 -71818703 - L1PB4 LINE L1 -3827 3035 634 1087 177 0 0 chr4 112469959 112470145 -71818517 - L1PB4 LINE L1 -6663 200 15 1585 60 0 0 chr4 112470162 112470362 -71818300 - L1PA3 LINE L1 -3 6152 5953 2120 141 35 91 chr4 112470438 112470891 -71817771 + MSTA LTR MaLR 1 428 0 1300 238 120 21 chr4 112471594 112471976 -71816686 - MLT1E LTR MaLR -80 513 94 409 302 9 9 chr4 112472057 112472173 -71816489 - MLT1I LTR MaLR -6 403 288 36 53 0 0 chr4 112472248 112472305 -71816357 + AT_rich Low_complexity Low_complexity 1 57 0 1066 191 5 0 chr4 112472313 112472502 -71816160 + L1PA16 LINE L1 5968 6157 -9 2147 93 28 7 chr4 112472693 112472983 -71815679 + AluSx SINE Alu 2 297 -15 22 35 0 0 chr4 112473334 112473363 -71815299 + AT_rich Low_complexity Low_complexity 1 29 0 198 0 0 0 chr4 112473925 112473947 -71814715 + (A)n Simple_repeat Simple_repeat 1 22 0 19523 193 76 11 chr4 112474138 112481286 -71807376 + L1MA2 LINE L1 5 7723 0 498 259 102 80 chr4 112481536 112481949 -71806713 + Charlie8 DNA MER1_type 71 492 -1925 590 242 22 44 chr4 112482202 112482384 -71806278 - MER5B DNA MER1_type 0 178 1 368 261 72 18 chr4 112482608 112482719 -71805943 - LTR16A1 LTR ERVL -165 292 176 182 250 0 0 chr4 112483001 112483037 -71805625 + MIR3 SINE MIR 146 181 -27 1884 135 0 4 chr4 112483450 112483717 -71804945 + AluSx SINE Alu 7 272 -40 189 107 0 0 chr4 112484326 112484354 -71804308 + (TA)n Simple_repeat Simple_repeat 2 29 0 384 286 79 26 chr4 112484438 112484627 -71804035 - MIR SINE MIR -56 206 8 22 35 0 0 chr4 112485293 112485322 -71803340 + AT_rich Low_complexity Low_complexity 1 29 0 440 249 107 39 chr4 112485430 112485663 -71802999 - L2 LINE L2 -42 3271 3023 22 0 0 0 chr4 112485735 112485757 -71802905 + AT_rich Low_complexity Low_complexity 1 22 0 2348 115 27 53 chr4 112485895 112486269 -71802393 + THE1B LTR MaLR 1 364 0 191 366 37 0 chr4 112486469 112486551 -71802111 + MIR SINE MIR 37 121 -87 38 39 0 0 chr4 112486780 112486832 -71801830 + AT_rich Low_complexity Low_complexity 1 52 0 421 289 64 25 chr4 112487699 112487903 -71800759 + MIR SINE MIR 22 233 -29 1383 224 49 25 chr4 112488403 112488810 -71799852 - LTR52 LTR ERVL -4 417 1 226 397 56 8 chr4 112489921 112490047 -71798615 + L2 LINE L2 3140 3271 -1 642 272 263 12 chr4 112491013 112491336 -71797326 - L2 LINE L2 0 3313 2910 2059 147 5 49 chr4 112491524 112491892 -71796770 - THE1B LTR MaLR -12 352 1 11189 100 13 1 chr4 112491892 112493452 -71795210 - THE1B-int LTR MaLR 0 1580 3 2057 171 8 25 chr4 112493454 112493822 -71794840 - THE1B LTR MaLR 0 364 3 26 0 0 0 chr4 112494852 112494878 -71793784 + AT_rich Low_complexity Low_complexity 1 26 0 715 174 76 7 chr4 112495519 112495663 -71792999 + MER7A DNA MER2_type 47 198 -148 811 234 35 89 chr4 112495685 112495967 -71792695 - MER76 LTR ERV -368 320 54 480 163 81 24 chr4 112496145 112496268 -71792394 - MER104 DNA Tc2 -46 134 5 459 330 100 27 chr4 112496523 112496893 -71791769 - L1MC/D LINE L1 -2061 5747 5351 255 224 47 12 chr4 112498769 112498854 -71789808 - HAL1b LINE L1 -794 554 467 1974 125 88 26 chr4 112499233 112499576 -71789086 + THE1B LTR MaLR 1 364 0 10806 112 15 6 chr4 112499576 112501143 -71787519 + THE1B-int LTR MaLR 1 1580 0 1981 167 33 25 chr4 112501143 112501502 -71787160 + THE1B LTR MaLR 1 362 -2 1656 135 31 21 chr4 112502100 112502210 -71786452 + L1MC1 LINE L1 5990 6097 -236 1422 220 84 26 chr4 112502210 112502555 -71786107 - MLT1A1 LTR MaLR 0 365 1 1656 135 31 21 chr4 112502555 112502732 -71785930 + L1MC1 LINE L1 6097 6280 -53 800 255 57 44 chr4 112502736 112503034 -71785628 + MER76 LTR ERV 355 656 -32 326 305 59 21 chr4 112503055 112503242 -71785420 + L1ME LINE L1 5114 5307 -839 21 0 0 0 chr4 112503349 112503370 -71785292 + AT_rich Low_complexity Low_complexity 1 21 0 235 309 58 11 chr4 112503445 112503633 -71785029 + L1ME LINE L1 5628 5824 -297 472 304 108 40 chr4 112504703 112505131 -71783531 + L1M4 LINE L1 2995 3451 -2695 2020 125 174 8 chr4 112505355 112505722 -71782940 - MSTA LTR MaLR 0 428 1 283 314 20 0 chr4 112506236 112506338 -71782324 + LTR67 LTR ERVL 431 534 -23 780 319 120 43 chr4 112506342 112506430 -71782232 + L1M4 LINE L1 3864 3944 -2202 7626 23 0 0 chr4 112506430 112507839 -71780823 + L1PA3 LINE L1 4763 6171 0 780 319 120 43 chr4 112507839 112508716 -71779946 + L1M4 LINE L1 3944 4904 -1242 3076 161 108 56 chr4 112508998 112509958 -71778704 - L1MB8 LINE L1 0 6178 5172 1793 261 54 49 chr4 112509958 112510530 -71778132 - L1M4b LINE L1 -6280 579 5 643 206 0 24 chr4 112510571 112510697 -71777965 - FLAM_C SINE Alu -14 129 7 218 54 0 27 chr4 112510737 112510774 -71777888 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2075 116 0 14 chr4 112510778 112511071 -71777591 - AluY SINE Alu -22 289 1 218 261 101 14 chr4 112511113 112511182 -71777480 - MIR3 SINE MIR -8 200 126 248 204 3 99 chr4 112512243 112512442 -71776220 + A-rich Low_complexity Low_complexity 3 301 0 624 48 0 0 chr4 112513275 112513359 -71775303 + (TAGA)n Simple_repeat Simple_repeat 3 86 0 238 257 40 10 chr4 112516514 112516615 -71772047 - L1ME LINE L1 -627 5543 5440 300 314 70 43 chr4 112516616 112516801 -71771861 - L1ME LINE L1 -3001 3145 2956 4933 120 56 1 chr4 112516820 112517618 -71771044 - L1MA3 LINE L1 -102 6203 5362 2408 46 3 0 chr4 112517629 112517959 -71770703 - AluY SINE Alu 0 331 1 356 370 14 25 chr4 112517995 112518276 -71770386 - L1ME LINE L1 -3342 2804 2527 24 53 0 0 chr4 112518521 112518559 -71770103 + AT_rich Low_complexity Low_complexity 1 38 0 665 287 41 12 chr4 112519972 112520216 -71768446 - L2 LINE L2 0 3313 3063 351 321 62 44 chr4 112520236 112520510 -71768152 + L1M3c LINE L1 1308 1586 -4555 806 244 100 13 chr4 112520521 112520751 -71767911 + L2 LINE L2 2540 2789 -525 1782 183 35 5 chr4 112520753 112521130 -71767532 + L1MC3 LINE L1 6706 7093 -692 1440 190 43 0 chr4 112521154 112521407 -71767255 - ERVL-B1 LTR ERVL -2259 3505 3242 332 200 0 0 chr4 112521470 112521530 -71767132 + HERVL LTR ERVL 1517 1576 -4078 12650 201 26 6 chr4 112521535 112523912 -71764750 - ERVL-B1 LTR ERVL -2525 3239 816 1581 145 53 98 chr4 112523917 112524153 -71764509 + MER61A LTR ERV1 1 246 -97 12770 25 0 0 chr4 112524153 112526420 -71762242 + L1PA3 LINE L1 3882 6150 -5 1581 145 53 98 chr4 112526420 112526435 -71762227 + MER61A LTR ERV1 246 260 -83 186 43 0 0 chr4 112526435 112526458 -71762204 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1581 145 53 98 chr4 112526458 112526564 -71762098 + MER61A LTR ERV1 260 343 0 722 166 25 68 chr4 112526575 112526738 -71761924 + MER61A-int LTR ERV1 12 167 -5050 * 6847 84 201 107 chr4 112526737 112528287 -71760375 + pTR5 LTR ERV1 743 2438 0 1400 166 40 11 chr4 112528287 112528730 -71759932 + MER61A-int LTR ERV1 160 682 -4535 297 48 24 0 chr4 112528792 112528834 -71759828 + MER61A-int LTR ERV1 1320 1362 -3855 4259 115 51 30 chr4 112528836 112528927 -71759735 + MER61-int LTR ERV1 1655 1743 -5253 1951 124 4 4 chr4 112528927 112529201 -71759461 + AluSx SINE Alu 1 274 -38 4259 115 51 30 chr4 112529201 112529996 -71758666 + MER61-int LTR ERV1 1743 4949 -2047 1921 256 72 39 chr4 112529994 112530581 -71758081 - ERVL-B1 LTR ERVL -5114 650 45 * 322 336 109 7 chr4 112530616 112530653 -71758009 - MLT2B1 LTR ERVL -7 547 515 545 28 14 0 chr4 112530653 112530724 -71757938 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 322 336 109 7 chr4 112530724 112530823 -71757839 - MLT2B1 LTR ERVL -39 515 352 1960 121 109 18 chr4 112530829 112531169 -71757493 - THE1C LTR MaLR -4 371 1 5612 137 6 6 chr4 112531173 112532019 -71756643 - THE1C-int LTR MaLR -4 1576 731 3170 198 42 10 chr4 112532021 112534768 -71753894 + L1PB1 LINE L1 2326 4985 -1166 2494 54 0 3 chr4 112534768 112535064 -71753598 + AluY SINE Alu 1 295 -16 3170 198 42 10 chr4 112535064 112535519 -71753143 + L1PB1 LINE L1 4985 5424 -727 294 29 0 0 chr4 112535519 112535554 -71753108 + (TG)n Simple_repeat Simple_repeat 1 35 0 3170 198 42 10 chr4 112535554 112535577 -71753085 + L1PB1 LINE L1 5424 5445 -706 189 0 0 0 chr4 112535577 112535598 -71753064 + (TAA)n Simple_repeat Simple_repeat 2 22 0 3170 198 42 10 chr4 112535598 112535922 -71752740 + L1PB1 LINE L1 5445 6150 -1 605 285 92 37 chr4 112535922 112536248 -71752414 + L1M4 LINE L1 3104 3447 -2699 2171 98 0 29 chr4 112536690 112536997 -71751665 + AluY SINE Alu 1 298 -13 548 271 50 75 chr4 112539054 112539285 -71749377 - L1MD2 LINE L1 -2 6357 6133 405 0 0 0 chr4 112539285 112539330 -71749332 + (TG)n Simple_repeat Simple_repeat 2 46 0 548 271 50 75 chr4 112539330 112539379 -71749283 - L1MD2 LINE L1 -226 6133 6084 * 2022 230 100 20 chr4 112539378 112540169 -71748493 - L1M4c LINE L1 -4789 1857 1004 527 219 26 0 chr4 112540176 112540290 -71748372 - L1M4c LINE L1 -6410 132 16 1407 245 46 15 chr4 112540310 112540791 -71747871 - L1MDb LINE L1 -2392 4148 3653 1647 242 91 31 chr4 112540792 112541419 -71747243 - LTR68 LTR ERV1 0 740 1 1870 247 73 12 chr4 112541419 112542189 -71746473 - L1MDb LINE L1 -2885 3655 2839 1227 228 90 12 chr4 112542218 112542640 -71746022 + L1MDa LINE L1 2005 2459 -4081 357 223 7 7 chr4 112542648 112542766 -71745896 + L1MDa LINE L1 2584 2650 -3890 4649 215 48 22 chr4 112542778 112543002 -71745660 + L1PA12 LINE L1 6 223 -7358 180 0 0 0 chr4 112543002 112543022 -71745640 + (TGAG)n Simple_repeat Simple_repeat 4 23 0 4649 215 48 22 chr4 112543022 112543609 -71745053 + L1PA12 LINE L1 223 848 -6733 2208 132 0 0 chr4 112543609 112543920 -71744742 - AluY SINE Alu 0 311 1 4649 215 48 22 chr4 112543920 112544064 -71744598 + L1PA12 LINE L1 848 987 -6594 202 0 91 0 chr4 112544076 112544109 -71744553 + T-rich Low_complexity Low_complexity 2 37 0 12317 161 64 17 chr4 112544109 112547442 -71741220 - L1PBa LINE L1 -1748 5114 1530 1717 153 4 0 chr4 112547442 112547697 -71740965 - AluSx SINE Alu -31 281 26 12317 161 64 17 chr4 112547697 112548637 -71740025 - L1PBa LINE L1 -5332 1530 636 875 139 9 139 chr4 112548639 112548869 -71739793 - L1PBa LINE L1 -6663 200 1 2278 212 87 90 chr4 112548879 112549346 -71739316 - L1MDb LINE L1 -4536 2004 1537 302 68 0 0 chr4 112549346 112549390 -71739272 + MADE1 DNA Mariner 37 80 0 2278 212 87 90 chr4 112549390 112550049 -71738613 - L1MDb LINE L1 -5003 1537 843 349 335 40 17 chr4 112550415 112550588 -71738074 - L1MDb LINE L1 -6243 297 121 1336 110 93 42 chr4 112550588 112550825 -71737837 + THE1B LTR MaLR 1 249 -115 10025 106 7 1 chr4 112550926 112552303 -71736359 + THE1B-int LTR MaLR 195 1580 0 1834 148 63 37 chr4 112552305 112552656 -71736006 + THE1B LTR MaLR 3 362 -2 247 337 0 0 chr4 112552658 112552753 -71735909 - L1MDb LINE L1 -6293 250 156 2257 113 3 0 chr4 112553431 112553788 -71734874 + AluSx SINE Alu 1 358 0 21 0 0 0 chr4 112554121 112554142 -71734520 + AT_rich Low_complexity Low_complexity 1 21 0 2861 224 73 46 chr4 112554410 112556157 -71732505 - L1ME1 LINE L1 -4 6162 4365 452 179 98 9 chr4 112556153 112556265 -71732397 + L1MB8 LINE L1 6051 6172 -6 * 2662 127 11 9 chr4 112556526 112556974 -71731688 + L1MA8 LINE L1 5820 6268 -23 231 316 83 45 chr4 112557123 112557256 -71731406 + L2 LINE L2 3173 3310 -3 185 234 221 39 chr4 112557290 112557367 -71731295 - MIR SINE MIR -77 131 41 244 360 67 34 chr4 112557406 112557584 -71731078 + MIR SINE MIR 8 191 -71 26 0 0 0 chr4 112557897 112557923 -71730739 + AT_rich Low_complexity Low_complexity 1 26 0 430 154 24 57 chr4 112558673 112558796 -71729866 + L1MC4 LINE L1 6987 7105 -937 2183 131 35 5 chr4 112558913 112559288 -71729374 - L1MA5A LINE L1 -3 6294 5909 1211 164 13 44 chr4 112560587 112560812 -71727850 + AluJb SINE Alu 81 298 -14 397 329 42 13 chr4 112560919 112561299 -71727363 - L1ME4a LINE L1 -237 5884 5494 775 256 98 21 chr4 112561568 112561963 -71726699 - L1ME3A LINE L1 0 6170 5727 913 310 132 12 chr4 112562039 112562555 -71726107 + HAL1 LINE L1 1287 1864 -643 322 265 70 49 chr4 112562757 112562942 -71725720 + HAL1b LINE L1 746 934 -414 267 292 0 14 chr4 112564511 112564583 -71724079 + MIR SINE MIR 82 152 -110 26 30 0 0 chr4 112564663 112564696 -71723966 + AT_rich Low_complexity Low_complexity 1 33 0 23 68 0 0 chr4 112564802 112564846 -71723816 + AT_rich Low_complexity Low_complexity 1 44 0 25 0 0 0 chr4 112564884 112564909 -71723753 + AT_rich Low_complexity Low_complexity 1 25 0 2247 74 3 29 chr4 112565261 112565573 -71723089 - AluY SINE Alu -7 304 1 450 285 93 33 chr4 112566479 112566865 -71721797 + LTR33A LTR ERVL 59 473 -50 24 32 0 0 chr4 112567314 112567345 -71721317 + AT_rich Low_complexity Low_complexity 1 31 0 991 258 126 20 chr4 112568511 112568541 -71720121 + LTR50 LTR ERVL 4 29 -766 1709 189 45 14 chr4 112568541 112568895 -71719767 + MLT1A1 LTR MaLR 1 365 0 991 258 126 20 chr4 112568895 112569501 -71719161 + LTR50 LTR ERVL 29 793 -2 1472 194 147 12 chr4 112570181 112570527 -71718135 + MSTD LTR MaLR 1 393 -3 36 23 0 0 chr4 112570850 112570893 -71717769 + AT_rich Low_complexity Low_complexity 1 43 0 349 284 46 88 chr4 112570924 112571163 -71717499 + L1ME LINE L1 5518 5746 -375 1376 154 4 0 chr4 112571284 112571511 -71717151 + L1PB3 LINE L1 5923 6150 -4 1273 178 103 0 chr4 112571762 112572015 -71716647 + AluJb SINE Alu 1 279 -33 23 54 0 0 chr4 112572092 112572129 -71716533 + AT_rich Low_complexity Low_complexity 1 37 0 2133 129 0 0 chr4 112572176 112572479 -71716183 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr4 112572553 112572574 -71716088 + AT_rich Low_complexity Low_complexity 1 21 0 311 304 52 15 chr4 112572688 112572823 -71715839 + MIR SINE MIR 96 235 -27 328 226 0 0 chr4 112573359 112573421 -71715241 + Tigger5 DNA MER2_type 1 62 -2261 * 1534 141 23 4 chr4 112573419 112573675 -71714987 + Tigger5 DNA MER2_type 2062 2322 -1 26 0 0 0 chr4 112574093 112574119 -71714543 + AT_rich Low_complexity Low_complexity 1 26 0 25 51 0 0 chr4 112574463 112574502 -71714160 + AT_rich Low_complexity Low_complexity 1 39 0 1572 147 97 0 chr4 112575581 112575863 -71712799 + AluSx SINE Alu 1 307 0 21 36 0 0 chr4 112575958 112575986 -71712676 + AT_rich Low_complexity Low_complexity 1 28 0 1767 166 0 0 chr4 112576935 112577247 -71711415 + AluJo SINE Alu 1 312 0 250 207 17 0 chr4 112578443 112578501 -71710161 + T-rich Low_complexity Low_complexity 6 64 0 2538 114 14 3 chr4 112578807 112579167 -71709495 - THE1B LTR MaLR 0 364 1 414 288 108 50 chr4 112579243 112579465 -71709197 - HAL1b LINE L1 -659 689 455 552 295 50 0 chr4 112579742 112579881 -71708781 + MIR SINE MIR 46 191 -71 351 297 0 0 chr4 112682318 112682493 -71606169 + (TA)n Simple_repeat Simple_repeat 2 176 0 2570 99 3 0 chr4 112682509 112682864 -71605798 + L1PB1 LINE L1 5788 6143 -8 2427 79 3 9 chr4 112683606 112683921 -71604741 - AluSp SINE Alu 0 313 1 414 0 0 0 chr4 112684373 112684419 -71604243 + (TG)n Simple_repeat Simple_repeat 1 46 0 1983 67 0 30 chr4 112684695 112684962 -71603700 - AluY SINE Alu -8 303 45 229 181 28 42 chr4 112685006 112685078 -71603584 + L1ME4a LINE L1 5969 6039 -82 250 135 0 0 chr4 112685415 112685452 -71603210 - MLT1A1 LTR MaLR -1 364 328 10200 33 1 112 chr4 112685493 112686936 -71601726 - SVA Other Other -3 1383 101 487 48 99 18 chr4 112687038 112687380 -71601282 + (TA)n Simple_repeat Simple_repeat 1 369 0 430 266 14 50 chr4 112687703 112687842 -71600820 - L2 LINE L2 0 3313 3180 3837 223 99 14 chr4 112687855 112688832 -71599830 + MSTB1-int LTR MaLR 591 1650 -1 1771 169 89 51 chr4 112688835 112689249 -71599413 + MSTB1 LTR MaLR 3 432 0 259 208 19 0 chr4 112689258 112689311 -71599351 - MER58 DNA MER1_type -152 63 10 831 307 39 8 chr4 112689330 112689651 -71599011 - L2 LINE L2 -275 3038 2707 191 333 10 21 chr4 112689879 112689975 -71598687 - MIR3 SINE MIR -46 162 68 22 56 0 0 chr4 112690323 112690359 -71598303 + AT_rich Low_complexity Low_complexity 1 36 0 324 111 11 0 chr4 112691046 112691136 -71597526 - L1PA13 LINE L1 -19 6144 5919 9966 189 43 45 chr4 112692021 112696081 -71592581 - L1MA9 LINE L1 0 6312 2264 2797 142 73 24 chr4 112696105 112696776 -71591886 - THE1C-int LTR MaLR -903 468 1 2215 135 13 36 chr4 112696776 112696998 -71591664 - THE1C LTR MaLR 0 375 164 2303 103 7 0 chr4 112696998 112697308 -71591354 + AluSp SINE Alu 2 313 0 2215 135 13 36 chr4 112697308 112697469 -71591193 - THE1C LTR MaLR -211 164 1 193 176 78 20 chr4 112698109 112698160 -71590502 - MIR3 SINE MIR -3 205 152 2650 194 15 2 chr4 112698570 112699034 -71589628 + MER70A LTR ERVL 1 470 -2 6703 193 58 8 chr4 112699873 112700664 -71587998 + L1PA8 LINE L1 3455 4205 -1946 2368 100 0 0 chr4 112700664 112700973 -71587689 + AluSg SINE Alu 1 309 -1 6703 193 58 8 chr4 112700973 112701098 -71587564 + L1PA8 LINE L1 4205 4322 -1829 180 0 0 0 chr4 112701098 112701118 -71587544 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 7467 32 0 0 chr4 112701118 112702153 -71586509 - L1PA4 LINE L1 -11 6144 5111 7386 96 24 0 chr4 112702153 112703973 -71584689 + L1PA8 LINE L1 4323 6166 -6 6703 193 58 8 chr4 112703973 112705164 -71583498 + L1PA8 LINE L1 4321 5679 -472 3776 276 20 13 chr4 112705276 112706307 -71582355 + HERV3 LTR ERV1 1316 2354 -6072 12438 271 29 40 chr4 112706323 112710985 -71577677 + HERV3 LTR ERV1 3750 8362 -373 749 233 72 29 chr4 112711115 112711533 -71577129 + LTR30 LTR ERV1 190 493 0 451 284 6 9 chr4 112711535 112711696 -71576966 + MIR SINE MIR 54 252 -10 476 124 10 41 chr4 112713113 112713210 -71575452 - L1PA16 LINE L1 -5 6161 6068 1277 193 37 19 chr4 112713211 112713532 -71575130 - L1 LINE L1 -1537 4609 4283 396 263 106 31 chr4 112714178 112714338 -71574324 - MIR SINE MIR -74 188 17 22 0 0 0 chr4 112715093 112715115 -71573547 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr4 112715581 112715610 -71573052 + AT_rich Low_complexity Low_complexity 1 29 0 1950 139 14 0 chr4 112715863 112716157 -71572505 - AluSg SINE Alu -12 298 1 1743 208 59 5 chr4 112716184 112716555 -71572107 + MSTD LTR MaLR 3 393 -3 15028 198 15 5 chr4 112717220 112717855 -71570807 + L1PA14 LINE L1 1921 2549 -5035 2266 82 3 23 chr4 112717855 112718159 -71570503 - AluY SINE Alu -13 298 1 15028 198 15 5 chr4 112718159 112721739 -71566923 + L1PA14 LINE L1 2549 6184 -1400 5553 113 36 2 chr4 112721852 112722906 -71565756 + L1PA14 LINE L1 6505 7590 -9 607 254 15 0 chr4 112723328 112723458 -71565204 + MLT1E LTR MaLR 1 132 -461 1536 103 48 85 chr4 112723458 112723729 -71564933 + THE1C LTR MaLR 1 261 -114 226 172 0 0 chr4 112723732 112723790 -71564872 + MLT1E LTR MaLR 513 570 -23 752 207 35 41 chr4 112724050 112724219 -71564443 + FRAM SINE Alu 1 168 -8 404 305 113 44 chr4 112724500 112724832 -71563830 + L1MEc LINE L1 996 1312 -4893 218 233 41 55 chr4 112724893 112724966 -71563696 + MER5A DNA MER1_type 36 107 -82 540 213 22 15 chr4 112724990 112725126 -71563536 + L1MC3 LINE L1 7345 7481 -304 356 148 0 12 chr4 112725138 112725219 -71563443 + (GGAA)n Simple_repeat Simple_repeat 4 83 0 1217 174 37 27 chr4 112725219 112725518 -71563144 + L1MC3 LINE L1 7465 7766 -19 205 149 43 43 chr4 112725576 112725623 -71563039 - MIR SINE MIR -101 161 115 25 0 0 0 chr4 112725663 112725688 -71562974 + AT_rich Low_complexity Low_complexity 1 25 0 2207 115 10 13 chr4 112725897 112726209 -71562453 - AluSx SINE Alu -1 311 1 381 307 60 42 chr4 112726512 112726678 -71561984 + MIR SINE MIR 63 231 -31 2239 122 3 20 chr4 112726744 112727087 -71561575 - MER1B DNA MER1_type 0 337 1 362 273 50 8 chr4 112728089 112728210 -71560452 + L2 LINE L2 3188 3313 0 1384 165 0 13 chr4 112729277 112729507 -71559155 + AluJb SINE Alu 86 312 0 422 299 73 0 chr4 112729680 112729844 -71558818 - MLT1L LTR MaLR 0 615 440 2387 46 0 33 chr4 112729979 112730282 -71558380 - AluY SINE Alu -15 296 4 285 309 0 32 chr4 112730401 112730495 -71558167 - MLT1L LTR MaLR -524 91 1 777 302 42 40 chr4 112730708 112730845 -71557817 - MARNA DNA Mariner -23 563 428 2168 97 30 13 chr4 112730845 112731145 -71557517 - AluSx SINE Alu -7 305 1 777 302 42 40 chr4 112731145 112731434 -71557228 - MARNA DNA Mariner -158 428 136 21 0 0 0 chr4 112731577 112731598 -71557064 + AT_rich Low_complexity Low_complexity 1 21 0 195 300 20 0 chr4 112731641 112731691 -71556971 + L2 LINE L2 3263 3313 0 209 200 25 0 chr4 112732584 112732624 -71556038 + (CA)n Simple_repeat Simple_repeat 2 42 0 232 300 11 0 chr4 112733645 112733735 -71554927 - L1M4 LINE L1 -1306 4840 4750 21 36 0 0 chr4 112734109 112734137 -71554525 + AT_rich Low_complexity Low_complexity 1 28 0 208 75 19 94 chr4 112734361 112734414 -71554248 + (TA)n Simple_repeat Simple_repeat 1 49 0 443 313 90 17 chr4 112735243 112735476 -71553186 - MIR SINE MIR -10 252 3 612 228 138 45 chr4 112735494 112735894 -71552768 + LTR50 LTR ERVL 1 437 -358 365 283 83 25 chr4 112736715 112736835 -71551827 - L2 LINE L2 -1 3271 3145 657 111 0 10 chr4 112736952 112737051 -71551611 + MER4A LTR ERV1 1 98 -566 1719 121 23 33 chr4 112737051 112737398 -71551264 + MER4A LTR ERV1 261 662 -2 1568 94 122 38 chr4 112737400 112737687 -71550975 + MER4A-int LTR ERV1 1 311 -6287 386 248 95 112 chr4 112737743 112738110 -71550552 + LTR1B LTR ERV1 28 388 -397 620 165 93 10 chr4 112738111 112738346 -71550316 + MER4A LTR ERV1 374 664 0 25401 143 84 74 chr4 112738346 112742700 -71545962 + MER51B-int LTR ERV1 1600 6030 -1786 2080 132 0 7 chr4 112742700 112743004 -71545658 + AluY SINE Alu 1 302 -9 25401 143 84 74 chr4 112743004 112744808 -71543854 + MER51B-int LTR ERV1 6030 7816 0 2069 99 0 147 chr4 112744811 112745127 -71543535 + MER51B LTR ERV1 2 248 -129 2279 76 40 13 chr4 112745127 112745430 -71543232 - AluY SINE Alu 0 311 1 2069 99 0 147 chr4 112745430 112745515 -71543147 + MER51B LTR ERV1 248 344 -33 645 147 5 18 chr4 112745501 112745634 -71543028 + MER51B LTR ERV1 281 377 0 * 1518 137 32 34 chr4 112745635 112746089 -71542573 + MER4A-int LTR ERV1 672 1180 -5578 1976 152 0 3 chr4 112746107 112746397 -71542265 - AluSx SINE Alu -23 289 1 2997 115 87 9 chr4 112746397 112746946 -71541716 + MER4A-int LTR ERV1 1763 2354 -4244 1700 156 60 10 chr4 112746964 112747266 -71541396 - LTR8 LTR ERV1 -374 317 1 3583 127 94 37 chr4 112747266 112748155 -71540507 + MER4A-int LTR ERV1 2737 3676 -2922 * 14964 121 59 22 chr4 112748152 112750835 -71537827 + MER4A-int LTR ERV1 3815 6596 -2 675 104 9 9 chr4 112750841 112750947 -71537715 + MER4A LTR ERV1 1 106 -558 * 1582 151 3 77 chr4 112750941 112751313 -71537349 + MER4A LTR ERV1 262 664 0 433 333 8 8 chr4 112751731 112751860 -71536802 - MER5A DNA MER1_type -2 187 59 200 346 8 60 chr4 112751759 112751892 -71536770 + MER5A DNA MER1_type 43 168 -21 * 339 353 199 28 chr4 112753640 112754244 -71534418 + L2 LINE L2 2204 2910 -404 250 100 100 0 chr4 112754224 112754264 -71534398 - L2 LINE L2 -1 3271 3228 * 331 340 91 8 chr4 112754522 112754763 -71533899 + L2 LINE L2 3012 3272 0 181 319 69 96 chr4 112755845 112756105 -71532557 + L2 LINE L2 2901 3153 -119 534 315 51 94 chr4 112756276 112756787 -71531875 + L2 LINE L2 2825 3313 0 2037 153 69 35 chr4 112757013 112757519 -71531143 - MLT2A2 LTR ERVL 0 554 13 1277 224 52 9 chr4 112758119 112758450 -71530212 - L1M LINE L1 -765 5381 5051 * 4918 128 18 1 chr4 112758445 112759091 -71529571 + L1PA14 LINE L1 5379 6042 -119 231 114 0 0 chr4 112759091 112759135 -71529527 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 4918 128 18 1 chr4 112759135 112759256 -71529406 + L1PA14 LINE L1 6042 6159 -2 1146 159 0 34 chr4 112759273 112759481 -71529181 + L1PA16 LINE L1 5963 6163 -3 252 0 0 0 chr4 112759795 112759823 -71528839 + (GGGAGA)n Simple_repeat Simple_repeat 2 29 0 3017 164 17 82 chr4 112759824 112760334 -71528328 + MER73 LTR ERVL 31 490 -154 1880 96 75 41 chr4 112760334 112760627 -71528035 - AluSc SINE Alu -6 303 1 3017 164 17 82 chr4 112760627 112760773 -71527889 + MER73 LTR ERVL 490 644 0 1697 199 6 0 chr4 112760773 112761090 -71527572 - MLT1A1 LTR MaLR -33 332 14 443 223 0 0 chr4 112761102 112761196 -71527466 + AluJb SINE Alu 209 302 -10 279 283 57 94 chr4 112761228 112761440 -71527222 - MIR SINE MIR -10 252 49 1523 211 10 24 chr4 112761835 112762129 -71526533 + AluJo SINE Alu 1 290 -22 358 319 29 39 chr4 112762866 112762996 -71525666 - MIR SINE MIR -13 249 120 1510 199 35 3 chr4 112762996 112763278 -71525384 + AluJb SINE Alu 1 291 -21 358 319 29 39 chr4 112763278 112763351 -71525311 - MIR SINE MIR -142 120 48 226 226 0 19 chr4 112765211 112765264 -71523398 + GA-rich Low_complexity Low_complexity 3 54 0 6269 247 49 29 chr4 112766627 112769892 -71518770 + L1MA7 LINE L1 1 3052 -3298 2161 112 0 0 chr4 112769892 112770188 -71518474 - AluSx SINE Alu -16 296 1 6269 247 49 29 chr4 112770188 112771074 -71517588 + L1MA7 LINE L1 3052 3919 -2431 * 6822 165 26 20 chr4 112771050 112773277 -71515385 + L1MA7 LINE L1 4219 6457 -38 373 298 0 0 chr4 112773795 112773889 -71514773 + MER5A DNA MER1_type 9 102 -87 351 285 51 43 chr4 112774889 112775246 -71513416 + L1ME3A LINE L1 784 1175 -5086 330 282 119 46 chr4 112775335 112775746 -71512916 + L1ME3A LINE L1 4091 4531 -1549 268 291 234 16 chr4 112775874 112776118 -71512544 + L1ME3A LINE L1 4681 4977 -1103 1521 259 56 88 chr4 112776127 112776950 -71511712 + L1ME3A LINE L1 5308 6104 0 228 302 17 17 chr4 112777019 112777135 -71511527 + L1M4 LINE L1 4153 4268 -1878 186 266 127 13 chr4 112777297 112777376 -71511286 + L2 LINE L2 3225 3312 -1 181 156 44 44 chr4 112779456 112779501 -71509161 - L2 LINE L2 0 3313 3269 1546 161 3 91 chr4 112779630 112779648 -71509014 - AluJo SINE Alu 0 982 964 4010 124 25 5 chr4 112779648 112780279 -71508383 + LTR9B LTR ERV1 1 644 0 1546 161 3 91 chr4 112780279 112780642 -71508020 - AluJo SINE Alu -18 964 1 1430 125 35 42 chr4 112781161 112781449 -71507213 + THE1C LTR MaLR 90 375 0 1958 124 22 48 chr4 112781580 112781936 -71506726 - L1PA16 LINE L1 0 6166 5820 2537 234 7 15 chr4 112781938 112782531 -71506131 - L1P LINE L1 -1052 5094 4507 395 193 119 2 chr4 112783337 112783491 -71505171 - HAL1b LINE L1 -6 1342 1171 247 250 0 0 chr4 112783849 112783905 -71504757 - L1MA8 LINE L1 -247 6044 5989 741 216 97 48 chr4 112783968 112784249 -71504413 - MSTC LTR MaLR 0 428 90 1525 190 97 52 chr4 112784249 112784671 -71503991 - MSTB2 LTR MaLR 0 457 17 3982 258 129 16 chr4 112784677 112786001 -71502661 - MSTB2-int LTR MaLR 0 1651 178 1313 284 47 6 chr4 112786008 112786522 -71502140 + L1M4 LINE L1 3156 3690 -2456 690 288 26 4 chr4 112787845 112788074 -71500588 + L1M4 LINE L1 3457 3690 -2456 1596 204 30 6 chr4 112788944 112789277 -71499385 + MER58B DNA MER1_type 1 341 0 218 361 49 16 chr4 112789299 112789421 -71499241 - MIR3 SINE MIR -81 127 2 506 310 114 45 chr4 112790793 112791170 -71497492 - MER110 LTR ERV1 0 491 89 1912 114 23 7 chr4 112791909 112792216 -71496446 - L1PA13 LINE L1 -3 6160 5849 877 237 98 70 chr4 112792333 112792877 -71495785 + MER34B LTR ERV1 12 559 -6 433 277 79 23 chr4 112793192 112793369 -71495293 - MIR SINE MIR -44 218 32 3743 80 201 0 chr4 112793435 112794363 -71494299 + pTR5 LTR ERV1 734 2468 0 477 304 177 5 chr4 112794540 112794760 -71493902 - MIR SINE MIR 0 262 5 362 283 99 57 chr4 112795230 112795442 -71493220 + L2 LINE L2 209 429 -2885 217 404 6 22 chr4 112795467 112795650 -71493012 + L2 LINE L2 626 805 -2509 3186 113 16 21 chr4 112795685 112796170 -71492492 - LTR22B LTR ERVK -4 488 6 602 367 48 48 chr4 112796174 112796648 -71492014 + L2 LINE L2 799 1272 -2042 208 309 0 74 chr4 112796652 112796733 -71491929 + L2 LINE L2 1403 1477 -1837 562 279 150 46 chr4 112796891 112797257 -71491405 + MLT1J LTR MaLR 83 486 -25 1727 158 11 7 chr4 112797320 112797599 -71491063 + AluSx SINE Alu 5 284 -28 181 0 0 65 chr4 112797620 112797651 -71491011 + (TAA)n Simple_repeat Simple_repeat 3 31 0 533 130 0 11 chr4 112798109 112798201 -71490461 - L1PB3 LINE L1 -1 6153 6063 21 0 0 0 chr4 112798258 112798279 -71490383 + AT_rich Low_complexity Low_complexity 1 21 0 1811 113 9 83 chr4 112798919 112799245 -71489417 + AluSx SINE Alu 1 302 -10 31 0 0 0 chr4 112799636 112799667 -71488995 + AT_rich Low_complexity Low_complexity 1 31 0 568 277 133 54 chr4 112800050 112800515 -71488147 - L1 LINE L1 -2180 3966 3465 981 302 42 14 chr4 112801017 112801375 -71487287 + L1MEc LINE L1 539 906 -5919 285 29 0 0 chr4 112801382 112801416 -71487246 + (A)n Simple_repeat Simple_repeat 1 34 0 559 242 205 18 chr4 112801540 112801871 -71486791 + L1MEc LINE L1 1215 1607 -5218 760 279 114 20 chr4 112801900 112802348 -71486314 + L1MEc LINE L1 1499 2150 -4675 1663 192 13 6 chr4 112802354 112802671 -71485991 - MLT1B LTR MaLR 0 390 72 2217 245 140 64 chr4 112802673 112803686 -71484976 - MER52A LTR ERV1 0 1755 666 242 148 0 56 chr4 112803682 112803736 -71484926 - MLT1B LTR MaLR -306 84 34 * 423 0 0 0 chr4 112803825 112803872 -71484790 + (CA)n Simple_repeat Simple_repeat 2 48 0 1450 259 60 17 chr4 112803878 112804457 -71484205 + L1MEc LINE L1 2220 2823 -4002 943 289 68 34 chr4 112804529 112804944 -71483718 + L1MEc LINE L1 35 463 -5933 353 290 37 25 chr4 112805048 112805210 -71483452 + L1MEc LINE L1 2135 2298 -4098 3077 214 57 46 chr4 112805218 112805704 -71482958 - MER21B LTR ERV1 -54 809 309 414 0 0 0 chr4 112805704 112805750 -71482912 + (TG)n Simple_repeat Simple_repeat 2 47 0 3077 214 57 46 chr4 112805750 112806051 -71482611 - MER21B LTR ERV1 -554 309 13 205 300 0 17 chr4 112806127 112806187 -71482475 + L2 LINE L2 3255 3313 0 28 0 0 0 chr4 112807660 112807688 -71480974 + AT_rich Low_complexity Low_complexity 1 28 0 197 65 32 0 chr4 112809619 112809650 -71479012 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 2016 147 3 0 chr4 112810879 112811186 -71477476 + AluSx SINE Alu 4 311 -1 199 407 49 32 chr4 112811439 112811906 -71476756 - L2 LINE L2 -2520 794 320 298 299 52 0 chr4 112812080 112812177 -71476485 + L2 LINE L2 3199 3300 -13 203 246 123 15 chr4 112813018 112813083 -71475579 - L2 LINE L2 0 3313 3242 835 106 14 7 chr4 112813304 112813445 -71475217 - LTR23 LTR ERV1 -135 302 161 22 0 0 0 chr4 112813489 112813511 -71475151 + AT_rich Low_complexity Low_complexity 1 22 0 636 147 53 60 chr4 112813552 112813581 -71475081 - LTR23 LTR ERV1 -286 151 123 1568 201 0 23 chr4 112813581 112813889 -71474773 + AluJo SINE Alu 1 301 -11 636 147 53 60 chr4 112813889 112814009 -71474653 - LTR23 LTR ERV1 -314 123 3 24 0 0 0 chr4 112814098 112814122 -71474540 + AT_rich Low_complexity Low_complexity 1 24 0 979 213 84 45 chr4 112814128 112814490 -71474172 - MSTC LTR MaLR 0 428 1 24 53 0 0 chr4 112814602 112814640 -71474022 + AT_rich Low_complexity Low_complexity 1 38 0 3645 274 82 59 chr4 112814656 112816448 -71472214 - L2 LINE L2 -72 3241 1405 4072 168 30 78 chr4 112817454 112818394 -71470268 + MER4D LTR ERV1 1 895 -8 2420 62 3 0 chr4 112818776 112819096 -71469566 + AluY SINE Alu 1 321 0 191 328 16 0 chr4 112819944 112820008 -71468654 - L2 LINE L2 -847 2467 2403 236 281 0 0 chr4 112820088 112820145 -71468517 + (CATATA)n Simple_repeat Simple_repeat 4 60 0 2729 225 63 14 chr4 112820149 112820768 -71467894 - MER82 DNA MER2_type -3 650 2 26 82 0 0 chr4 112820795 112820856 -71467806 + AT_rich Low_complexity Low_complexity 1 61 0 4265 70 0 28 chr4 112821101 112821671 -71466991 + MER41A LTR ERV1 1 554 0 14451 223 36 23 chr4 112821806 112826904 -71461758 - L1P4 LINE L1 -378 6439 1289 457 291 130 79 chr4 112826876 112827168 -71461494 - L1P4 LINE L1 -5985 802 496 * 338 277 0 24 chr4 112827183 112827266 -71461396 - AluJb SINE Alu -43 259 179 338 277 0 24 chr4 112827309 112827392 -71461270 - AluJb SINE Alu -43 259 179 338 277 0 24 chr4 112827435 112827518 -71461144 - AluJb SINE Alu -43 259 179 480 192 19 19 chr4 112827518 112827622 -71461040 - L1MCb LINE L1 -5480 565 462 203 244 0 0 chr4 112827633 112827674 -71460988 + CT-rich Low_complexity Low_complexity 5 45 0 980 206 48 123 chr4 112827719 112828175 -71460487 - L1MCb LINE L1 -5623 422 1 224 197 61 27 chr4 112828389 112828536 -71460126 + (TTATA)n Simple_repeat Simple_repeat 3 154 0 2212 122 0 3 chr4 112828593 112828905 -71459757 - AluSx SINE Alu -1 311 1 2311 96 3 0 chr4 112829290 112829592 -71459070 - AluSg SINE Alu -7 303 1 1412 216 40 43 chr4 112831772 112831913 -71456749 + MLT1A2 LTR MaLR 4 144 -230 1493 195 99 12 chr4 112831913 112832256 -71456406 + MER93b LTR ERV1 1 373 0 1412 216 40 43 chr4 112832256 112832484 -71456178 + MLT1A2 LTR MaLR 144 372 -2 23 33 0 0 chr4 112832562 112832592 -71456070 + AT_rich Low_complexity Low_complexity 1 30 0 218 309 114 33 chr4 112833770 112833936 -71454726 - MIR SINE MIR -46 216 36 201 167 0 0 chr4 112834472 112834508 -71454154 + (TTAA)n Simple_repeat Simple_repeat 1 36 0 1772 113 0 4 chr4 112834508 112834747 -71453915 - AluSg SINE Alu -18 292 55 1233 187 116 25 chr4 112834926 112835328 -71453334 - MER31A LTR ERV1 0 485 4 533 223 69 15 chr4 112836293 112836423 -71452239 + MLT1E1 LTR MaLR 1 137 -517 2013 127 0 11 chr4 112836437 112836748 -71451914 + AluSg SINE Alu 1 308 0 598 340 62 24 chr4 112836761 112837134 -71451528 + L1ME LINE L1 140 526 -5544 573 255 14 34 chr4 112837127 112837172 -71451490 + L1ME LINE L1 2371 2415 -3665 * 1465 129 9 21 chr4 112837172 112837405 -71451257 + MER30 DNA MER1_type 1 230 0 573 255 14 34 chr4 112837405 112837567 -71451095 + L1ME LINE L1 2415 2574 -3506 760 286 24 39 chr4 112837593 112837848 -71450814 - MLT1D LTR MaLR -21 484 234 793 125 50 0 chr4 112837971 112838091 -71450571 + MER30 DNA MER1_type 105 230 0 479 245 25 6 chr4 112838094 112838253 -71450409 + L1ME LINE L1 2413 2574 -3506 1939 239 12 38 chr4 112838279 112838776 -71449886 - MLT1D LTR MaLR -21 484 1 1354 238 37 61 chr4 112838778 112838895 -71449767 + L1ME LINE L1 2572 2690 -3390 4169 77 0 30 chr4 112838895 112839492 -71449170 + L1PB1 LINE L1 5573 6151 0 1354 238 37 61 chr4 112839492 112839882 -71448780 + L1ME LINE L1 2690 3067 -3013 386 200 88 0 chr4 112840039 112840119 -71448543 + MER70B LTR ERVL 1 87 -491 4319 257 37 23 chr4 112840129 112842074 -71446588 + L1PA13 LINE L1 53 2095 -4744 1257 210 31 38 chr4 112842074 112842225 -71446437 + L1PA13 LINE L1 2526 2676 -4173 1837 140 65 0 chr4 112842225 112842504 -71446158 + AluSq SINE Alu 1 297 -16 1257 210 31 38 chr4 112842504 112842671 -71445991 + L1PA13 LINE L1 2676 2842 -4007 545 148 9 9 chr4 112842676 112842788 -71445874 - L1PA15-16 LINE L1 -3918 2931 2820 1321 181 42 7 chr4 112842797 112843167 -71445495 + L1PA15 LINE L1 2800 3179 -4405 2650 237 12 6 chr4 112843183 112843829 -71444833 + L1PA15 LINE L1 3567 4216 -3368 8051 174 12 18 chr4 112843848 112846061 -71442601 + L1PA15 LINE L1 5115 7311 -292 963 182 11 0 chr4 112846057 112846238 -71442424 - L1P LINE L1 -1101 5045 4863 * 23503 169 29 20 chr4 112846249 112851620 -71437042 + L1P4 LINE L1 515 6009 -474 1081 259 65 15 chr4 112851642 112851905 -71436757 + MER70A LTR ERVL 64 339 -133 674 102 10 10 chr4 112951922 112952020 -71336642 - AluS SINE Alu -214 99 2 849 132 0 28 chr4 112952116 112952260 -71336402 - FLAM_C SINE Alu -1 142 3 518 234 33 26 chr4 112952261 112952415 -71336247 - MIR3 SINE MIR -63 145 15 2071 90 0 10 chr4 112952872 112953161 -71335501 - AluSc SINE Alu -17 292 7 2149 106 10 0 chr4 112953322 112953663 -71334999 - AluSx SINE Alu 0 312 1 1937 109 9 31 chr4 112955069 112955389 -71333273 - AluSq SINE Alu 0 313 1 1684 225 75 112 chr4 112955392 112956953 -71331709 + L2 LINE L2 1635 3135 -178 1982 120 33 0 chr4 112956963 112957262 -71331400 - AluSc SINE Alu 0 309 1 2396 48 10 3 chr4 112957262 112957555 -71331107 - AluSp SINE Alu -18 295 1 1720 146 10 17 chr4 112957555 112957572 -71331090 - AluSq SINE Alu -14 299 283 189 0 0 0 chr4 112957572 112957593 -71331069 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1720 146 10 17 chr4 112957593 112957875 -71330787 - AluSq SINE Alu -30 283 1 809 0 21 0 chr4 112957886 112957982 -71330680 + (TTTC)n Simple_repeat Simple_repeat 4 101 0 1543 183 3 23 chr4 112959423 112959729 -71328933 + AluJo SINE Alu 1 300 -12 240 35 0 0 chr4 112962783 112962812 -71325850 + (CCCCAG)n Simple_repeat Simple_repeat 3 31 0 239 234 16 16 chr4 112964173 112964237 -71324425 + MIR SINE MIR 90 153 -109 526 310 27 21 chr4 112964470 112964657 -71324005 - MIR3 SINE MIR -16 192 5 199 279 115 0 chr4 112964940 112965001 -71323661 + L2 LINE L2 3200 3267 -5 236 356 127 3 chr4 112965314 112965629 -71323033 + L2 LINE L2 1692 2045 -1269 1401 159 38 42 chr4 112965818 112966107 -71322555 - AluJo SINE Alu -24 288 1 2268 88 0 3 chr4 112966207 112966514 -71322148 - AluY SINE Alu -5 306 1 1858 153 0 3 chr4 112966544 112966838 -71321824 - AluJb SINE Alu -17 295 3 371 304 156 12 chr4 112968006 112968249 -71320413 + L2 LINE L2 2240 2517 -797 2066 101 23 16 chr4 112968280 112968586 -71320076 - AluSx SINE Alu -4 308 1 262 245 281 14 chr4 112968602 112968741 -71319921 + L2 LINE L2 3128 3303 -10 1285 195 116 0 chr4 112969569 112969836 -71318826 + AluJb SINE Alu 1 298 -14 378 313 86 0 chr4 112970046 112970244 -71318418 + MIR SINE MIR 48 262 0 2426 61 0 0 chr4 112971374 112971670 -71316992 + AluY SINE Alu 1 296 -15 1469 76 11 0 chr4 112971675 112971891 -71316771 + AluSg/x SINE Alu 94 311 0 960 133 40 0 chr4 112971922 112972072 -71316590 + FRAM SINE Alu 7 162 -14 313 305 0 57 chr4 112972074 112972179 -71316483 - L1ME4a LINE L1 -59 6062 5964 2076 117 17 0 chr4 112972369 112972668 -71315994 + AluSc SINE Alu 1 304 -5 1642 147 18 123 chr4 112972845 112973234 -71315428 + MER7A DNA MER2_type 1 346 0 203 257 0 71 chr4 112973966 112974036 -71314626 + MIR SINE MIR 118 182 -80 1054 287 74 28 chr4 112976667 112977124 -71311538 + L1ME3A LINE L1 5413 5890 -280 337 133 0 11 chr4 112977126 112977276 -71311386 + AluJo SINE Alu 86 291 -11 802 118 42 0 chr4 112977280 112977399 -71311263 + AluJo SINE Alu 13 136 -176 2245 100 0 0 chr4 112977399 112977699 -71310963 + AluSx SINE Alu 1 300 -12 1982 125 10 0 chr4 112977706 112977995 -71310667 + AluSx SINE Alu 1 292 -20 1818 113 33 43 chr4 112978060 112978194 -71310468 + AluSx SINE Alu 1 135 -177 2156 99 3 3 chr4 112978194 112978486 -71310176 + AluSc SINE Alu 1 292 -17 1818 113 33 43 chr4 112978486 112978653 -71310009 + AluSx SINE Alu 135 299 -13 1361 111 0 53 chr4 112979271 112979496 -71309166 - AluJb SINE Alu -14 298 86 350 178 11 56 chr4 112979503 112979530 -71309132 - MER58 DNA MER1_type -17 2403 2376 1018 227 102 0 chr4 112979530 112979746 -71308916 - MER8 DNA MER2_type 0 239 2 350 178 11 56 chr4 112979746 112979808 -71308854 - MER58 DNA MER1_type -44 2376 2318 235 103 103 35 chr4 112979798 112979856 -71308806 - MER58 DNA MER1_type -111 104 43 * 249 311 34 34 chr4 112980984 112981103 -71307559 - L2 LINE L2 -518 2796 2678 989 197 22 40 chr4 112986891 112987114 -71301548 - MER20 DNA MER1_type 0 219 1 359 257 221 0 chr4 112987925 112988065 -71300597 - MIR SINE MIR -13 249 79 1398 200 33 30 chr4 112989238 112989538 -71299124 - AluJo SINE Alu -11 301 1 183 313 45 0 chr4 112989605 112989672 -71298990 + MIR SINE MIR 80 149 -113 255 389 48 16 chr4 112990082 112990208 -71298454 + L2 LINE L2 3143 3272 0 2077 108 0 41 chr4 112990281 112990596 -71298066 - AluSx SINE Alu -10 302 1 636 226 8 8 chr4 112990630 112990754 -71297908 - FLAM_A SINE Alu -9 124 1 2194 105 0 0 chr4 112990825 112991119 -71297543 - AluSq SINE Alu -19 294 1 308 148 0 0 chr4 112991137 112991191 -71297471 - Alu SINE Alu 0 302 249 2263 90 0 22 chr4 112991203 112991378 -71297284 - AluSp SINE Alu -9 304 138 2426 70 0 16 chr4 112991378 112991694 -71296968 - AluY SINE Alu 0 311 1 2263 90 0 22 chr4 112991694 112991829 -71296833 - AluSp SINE Alu -175 138 1 21 0 0 0 chr4 112992291 112992312 -71296350 + AT_rich Low_complexity Low_complexity 1 21 0 1795 154 10 14 chr4 112992316 112992609 -71296053 + AluJb SINE Alu 1 292 -20 1515 179 34 10 chr4 112992613 112992910 -71295752 + AluJb SINE Alu 1 304 -8 192 229 21 0 chr4 112992910 112992958 -71295704 - MER5B DNA MER1_type -124 54 6 2062 107 0 30 chr4 112992966 112993265 -71295397 + AluSg SINE Alu 1 290 -20 644 249 75 64 chr4 112993767 112994032 -71294630 - MER102b DNA MER1_type -8 333 66 2250 89 7 0 chr4 112994092 112994394 -71294268 - AluSp SINE Alu -9 304 1 1672 123 4 0 chr4 112995076 112995364 -71293298 - AluSx SINE Alu 0 327 39 2005 84 0 7 chr4 112995763 112996036 -71292626 - AluSg SINE Alu -39 271 1 2234 108 0 0 chr4 112996482 112996779 -71291883 + AluSx SINE Alu 1 297 -15 192 191 362 9 chr4 112997609 112997714 -71290948 - MIR3 SINE MIR -24 184 43 291 262 135 57 chr4 112998559 112998700 -71289962 + MIR SINE MIR 61 212 -50 2229 67 0 38 chr4 112998726 112999039 -71289623 + AluSg SINE Alu 1 301 -9 976 132 92 0 chr4 112999044 112999196 -71289466 + AluSx SINE Alu 16 181 -131 1166 126 120 0 chr4 112999196 112999387 -71289275 - AluSq SINE Alu -88 225 12 2253 119 51 3 chr4 112999399 112999752 -71288910 - MER41A LTR ERV1 -184 370 1 454 103 0 0 chr4 112999752 112999820 -71288842 + L1MB3 LINE L1 5866 5933 -250 491 110 33 44 chr4 112999820 112999880 -71288782 - MER51B LTR ERV1 0 377 317 1720 113 0 0 chr4 112999880 113000120 -71288542 + AluSg SINE Alu 1 240 -70 491 110 33 44 chr4 113000120 113000150 -71288512 - MER51B LTR ERV1 -60 317 288 1703 86 0 0 chr4 113000150 113000382 -71288280 + pTR5 LTR ERV1 162 393 -2045 262 264 36 0 chr4 113000387 113000497 -71288165 + (TG)n Simple_repeat Simple_repeat 1 114 0 1637 167 0 49 chr4 113001148 113001454 -71287208 + AluJb SINE Alu 1 291 -21 299 272 22 11 chr4 113001725 113001817 -71286845 + MIR SINE MIR 8 100 -162 624 369 14 0 chr4 113101866 113102145 -71186517 + ERVL LTR ERVL 4909 5191 -573 830 263 103 57 chr4 113102595 113103002 -71185660 + LTR16A1 LTR ERVL 32 457 0 511 271 124 62 chr4 113103375 113103820 -71184842 + MLT1J LTR MaLR 1 424 -22 238 239 84 28 chr4 113104010 113104081 -71184581 - MER5C DNA MER1_type -248 76 2 371 275 262 0 chr4 113104279 113104428 -71184234 + MIR SINE MIR 3 190 -72 361 256 126 123 chr4 113104878 113105179 -71183483 + L2 LINE L2 3006 3307 -6 496 332 69 14 chr4 113106220 113106437 -71182225 - MIR SINE MIR -1 261 33 2235 120 0 0 chr4 113108123 113108424 -71180238 - AluSg SINE Alu -9 301 1 21 82 0 0 chr4 113109036 113109085 -71179577 + AT_rich Low_complexity Low_complexity 1 49 0 509 294 40 70 chr4 113110062 113110253 -71178409 + MIR3 SINE MIR 14 204 -4 324 102 0 0 chr4 113110708 113110757 -71177905 + (A)n Simple_repeat Simple_repeat 1 49 0 207 0 0 0 chr4 113112016 113112039 -71176623 + (TA)n Simple_repeat Simple_repeat 2 24 0 22 35 0 0 chr4 113112447 113112476 -71176186 + AT_rich Low_complexity Low_complexity 1 29 0 212 277 60 36 chr4 113112854 113112937 -71175725 + L2 LINE L2 3225 3309 -4 21 57 0 0 chr4 113114942 113114977 -71173685 + AT_rich Low_complexity Low_complexity 1 35 0 940 248 14 5 chr4 113115701 113115923 -71172739 - MIR SINE MIR -12 250 27 24 0 0 0 chr4 113116314 113116338 -71172324 + AT_rich Low_complexity Low_complexity 1 24 0 44 20 0 0 chr4 113116465 113116516 -71172146 + AT_rich Low_complexity Low_complexity 1 51 0 691 145 48 0 chr4 113117004 113117128 -71171534 - L1MB3 LINE L1 -8 6175 6046 338 359 8 0 chr4 113119980 113120097 -71168565 + L2 LINE L2 3193 3310 -3 386 313 85 25 chr4 113120277 113120478 -71168184 + MIR SINE MIR 48 260 -2 189 107 0 0 chr4 113121517 113121545 -71167117 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1650 220 8 16 chr4 113121756 113122124 -71166538 - MLT1A1 LTR MaLR 0 365 1 22 56 0 0 chr4 113122614 113122650 -71166012 + AT_rich Low_complexity Low_complexity 1 36 0 227 330 50 0 chr4 113122896 113122996 -71165666 + MIR SINE MIR 37 141 -121 2777 72 22 0 chr4 113123072 113123639 -71165023 - L1PA8 LINE L1 -601 5571 4996 4511 86 0 2 chr4 113123639 113124247 -71164415 + L1PA8 LINE L1 5558 6172 0 2030 122 0 7 chr4 113124580 113124866 -71163796 + AluSg SINE Alu 9 292 -18 219 328 46 34 chr4 113124870 113125028 -71163634 - MIR SINE MIR -64 144 4 191 296 0 0 chr4 113126042 113126096 -71162566 - L2 LINE L2 -2 3311 3258 645 342 146 5 chr4 113126129 113126547 -71162115 - L2 LINE L2 0 3313 2837 190 270 16 32 chr4 113126529 113126592 -71162070 - L2 LINE L2 -76 3237 3176 * 1936 114 4 0 chr4 113126781 113127110 -71161552 + AluSx SINE Alu 45 374 0 260 375 150 18 chr4 113127209 113127887 -71160775 - L2 LINE L2 -488 2826 2059 240 111 0 0 chr4 113127897 113127933 -71160729 + (TAA)n Simple_repeat Simple_repeat 3 38 0 270 267 41 68 chr4 113127995 113128141 -71160521 - MIR SINE MIR -47 215 74 209 240 240 0 chr4 113128120 113128216 -71160446 - MIR SINE MIR -32 230 112 * 26 50 0 0 chr4 113129738 113129778 -71158884 + AT_rich Low_complexity Low_complexity 1 40 0 4309 128 5 37 chr4 113130453 113131177 -71157485 + L1MA3 LINE L1 5577 6278 -27 387 105 0 0 chr4 113131177 113131234 -71157428 + (TA)n Simple_repeat Simple_repeat 2 58 0 4309 128 5 37 chr4 113131234 113131261 -71157401 + L1MA3 LINE L1 6278 6304 -1 17261 180 47 53 chr4 113131264 113134833 -71153829 + ERVL LTR ERVL 1874 5419 -345 294 29 0 0 chr4 113134836 113134871 -71153791 + (TG)n Simple_repeat Simple_repeat 2 36 0 25 51 0 0 chr4 113136322 113136361 -71152301 + AT_rich Low_complexity Low_complexity 1 39 0 2782 9 0 9 chr4 113136582 113136897 -71151765 + AluYb8 SINE Alu 1 312 -6 183 139 0 0 chr4 113137614 113137650 -71151012 + (TG)n Simple_repeat Simple_repeat 2 37 0 1275 301 98 54 chr4 113137798 113138632 -71150030 + L2 LINE L2 2185 3053 -260 29 28 0 0 chr4 113140329 113140365 -71148297 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr4 113140826 113140847 -71147815 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr4 113140932 113140955 -71147707 + (A)n Simple_repeat Simple_repeat 1 23 0 29 0 0 0 chr4 113141030 113141059 -71147603 + AT_rich Low_complexity Low_complexity 1 29 0 251 91 0 0 chr4 113141115 113141148 -71147514 - L1MA2 LINE L1 -563 5741 5709 3249 116 45 2 chr4 113141148 113141676 -71146986 + L1MA2 LINE L1 5754 6304 0 200 204 68 0 chr4 113143020 113143108 -71145554 + GA-rich Low_complexity Low_complexity 3 96 0 576 29 0 0 chr4 113143741 113143811 -71144851 + (TG)n Simple_repeat Simple_repeat 1 70 0 495 178 0 75 chr4 113143899 113144006 -71144656 - FLAM_C SINE Alu -11 132 34 1743 177 36 9 chr4 113144201 113144535 -71144127 + MER2 DNA MER2_type 2 344 0 526 116 0 84 chr4 113144734 113144829 -71143833 + FLAM_A SINE Alu 42 128 -14 592 308 54 0 chr4 113144955 113145140 -71143522 + MIR SINE MIR 64 258 -4 1739 164 112 110 chr4 113145393 113145560 -71143102 + MER101B LTR ERV1 1 166 -404 1667 30 0 0 chr4 113145560 113145760 -71142902 + L1PA2 LINE L1 5956 6155 0 1739 164 112 110 chr4 113145760 113146110 -71142552 + MER101B LTR ERV1 166 519 -51 521 314 128 46 chr4 113146490 113147110 -71141552 - L2 LINE L2 -120 3193 2497 189 220 40 0 chr4 113147107 113147157 -71141505 - L2 LINE L2 0 3313 3262 * 23 33 0 0 chr4 113147318 113147348 -71141314 + AT_rich Low_complexity Low_complexity 1 30 0 298 366 7 14 chr4 113149026 113149168 -71139494 + CT-rich Low_complexity Low_complexity 5 145 0 3891 171 8 17 chr4 113149196 113149908 -71138754 + MER50 LTR ERV1 1 706 -28 180 152 0 0 chr4 113151639 113151672 -71136990 + A-rich Low_complexity Low_complexity 1 33 0 1326 200 3 13 chr4 113151894 113152194 -71136468 + L1MA4 LINE L1 5999 6295 -5 22 0 0 0 chr4 113152257 113152279 -71136383 + AT_rich Low_complexity Low_complexity 1 22 0 247 294 87 54 chr4 113153959 113154143 -71134519 - L3b LINE CR1 -4 1579 1390 261 0 0 0 chr4 113154420 113154449 -71134213 + (TG)n Simple_repeat Simple_repeat 2 30 0 259 331 0 58 chr4 113154563 113154684 -71133978 - L3 LINE CR1 -109 1468 1355 291 323 143 26 chr4 113154714 113154903 -71133759 - L3 LINE CR1 -749 828 618 1400 239 64 56 chr4 113155749 113156246 -71132416 + MLT2B1 LTR ERVL 1 501 -19 603 147 0 0 chr4 113156246 113156348 -71132314 + (TCCA)n Simple_repeat Simple_repeat 3 104 0 298 149 0 60 chr4 113156350 113156417 -71132245 + MLT2B1 LTR ERVL 458 520 0 216 0 0 0 chr4 113157580 113157604 -71131058 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 31 0 0 0 chr4 113158403 113158434 -71130228 + AT_rich Low_complexity Low_complexity 1 31 0 10413 188 35 22 chr4 113158559 113161511 -71127151 + L1MA8 LINE L1 2984 5985 -306 2120 65 0 11 chr4 113161511 113161787 -71126875 + AluY SINE Alu 39 311 0 10413 188 35 22 chr4 113161787 113162088 -71126574 + L1MA8 LINE L1 5985 6281 -10 363 271 24 35 chr4 113162134 113162304 -71126358 + Charlie7 DNA MER1_type 471 638 -1974 193 128 43 0 chr4 113163627 113163674 -71124988 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 227 358 106 51 chr4 113165086 113165500 -71123162 - L2 LINE L2 -446 2868 2432 222 149 0 21 chr4 113166922 113166969 -71121693 + (TTTTTA)n Simple_repeat Simple_repeat 3 48 0 293 209 30 0 chr4 113169087 113169154 -71119508 + L1MB1 LINE L1 6088 6156 -12 216 0 0 0 chr4 113169154 113169178 -71119484 + (CA)n Simple_repeat Simple_repeat 2 25 0 1636 131 4 15 chr4 113169757 113170016 -71118646 + AluSq SINE Alu 1 256 -57 428 130 8 53 chr4 113170033 113170164 -71118498 + (GAAA)n Simple_repeat Simple_repeat 4 128 0 316 347 147 6 chr4 113170653 113170823 -71117839 + MIR SINE MIR 19 212 -50 38 51 0 0 chr4 113170866 113170925 -71117737 + AT_rich Low_complexity Low_complexity 1 59 0 1385 122 34 0 chr4 113171126 113171363 -71117299 - L1MA7 LINE L1 0 6291 6047 674 274 22 31 chr4 113171563 113171789 -71116873 + L2 LINE L2 3090 3313 0 335 381 39 64 chr4 113172701 113172982 -71115680 - L2 LINE L2 -2 3270 2997 578 317 82 45 chr4 113173103 113173507 -71115155 - L2 LINE L2 -472 2842 2424 188 374 55 42 chr4 113173564 113173874 -71114788 - L2 LINE L2 -1979 1335 1022 21 36 0 0 chr4 113174030 113174058 -71114604 + AT_rich Low_complexity Low_complexity 1 28 0 1332 267 113 16 chr4 113174593 113174882 -71113780 + L1MCa LINE L1 1098 1358 -5249 215 53 0 53 chr4 113174882 113174920 -71113742 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1332 267 113 16 chr4 113174920 113175742 -71112920 + L1MCa LINE L1 1358 2507 -4100 1381 140 29 75 chr4 113175769 113176048 -71112614 - MER1B DNA MER1_type 0 339 74 340 289 20 7 chr4 113176074 113176226 -71112436 + L1MCa LINE L1 2517 2670 -3756 195 236 73 0 chr4 113176307 113176362 -71112300 + L2 LINE L2 1428 1486 -1828 22 0 0 0 chr4 113177845 113177867 -71110795 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr4 113178203 113178236 -71110426 + AT_rich Low_complexity Low_complexity 1 33 0 1589 153 8 4 chr4 113180047 113180308 -71108354 + AluSx SINE Alu 37 298 -14 37 0 0 0 chr4 113180308 113180345 -71108317 + AT_rich Low_complexity Low_complexity 1 37 0 212 309 119 24 chr4 113180603 113180729 -71107933 - MIR SINE MIR -110 152 15 341 370 7 7 chr4 113181829 113181964 -71106698 + MIR SINE MIR 20 154 -108 282 218 26 0 chr4 113184134 113184212 -71104450 - MER116 DNA Mariner 0 80 1 9468 121 5 3 chr4 113184864 113187087 -71101575 - L1PA8A LINE L1 -1 6130 3899 5426 125 14 3 chr4 113187087 113187859 -71100803 + L1P LINE L1 2998 3782 -2364 452 60 0 0 chr4 113187859 113187922 -71100740 + L1PA2 LINE L1 6087 6153 -2 5426 125 14 3 chr4 113187922 113188040 -71100622 + L1P LINE L1 3782 3897 -2249 23 33 0 0 chr4 113188346 113188376 -71100286 + AT_rich Low_complexity Low_complexity 1 30 0 2343 74 0 7 chr4 113188432 113188731 -71099931 + AluSc SINE Alu 1 297 -12 10356 211 52 20 chr4 113188997 113191263 -71097399 - L1MC1 LINE L1 0 6613 4421 2136 118 0 0 chr4 113191263 113191567 -71097095 - AluY SINE Alu -7 304 1 10356 211 52 20 chr4 113191567 113192518 -71096144 - L1MC1 LINE L1 -2192 4421 3502 1919 177 26 0 chr4 113192518 113192857 -71095805 + MER7A DNA MER2_type 1 346 0 10356 211 52 20 chr4 113192857 113195828 -71092834 - L1MC1 LINE L1 -3111 3502 17 672 322 13 21 chr4 113199356 113199592 -71089070 + MIR SINE MIR 19 252 -10 979 104 181 0 chr4 113200448 113200630 -71088032 + pTR5 LTR ERV1 1807 2021 -417 312 219 31 21 chr4 113200637 113200733 -71087929 + LTR30 LTR ERV1 546 642 -80 2255 101 3 0 chr4 113200733 113201061 -71087601 + pTR5 LTR ERV1 66 394 -2044 37235 33 24 1 chr4 113201804 113207210 -71081452 - L1PA3 LINE L1 -8 6147 617 782 42 0 0 chr4 113207204 113207300 -71081362 - L1PA3 LINE L1 -6048 98 3 * 270 286 174 25 chr4 113207304 113207500 -71081162 - L2 LINE L2 -42 3271 3047 385 280 153 11 chr4 113207825 113208014 -71080648 + L1MC4a LINE L1 6696 6911 -897 25 31 0 0 chr4 113208157 113208189 -71080473 + AT_rich Low_complexity Low_complexity 1 32 0 900 346 113 12 chr4 113208358 113209075 -71079587 - L2 LINE L2 0 3313 2521 207 0 0 0 chr4 113209080 113209103 -71079559 + (T)n Simple_repeat Simple_repeat 1 23 0 301 172 52 121 chr4 113209425 113209541 -71079121 - LTR28 LTR ERV1 -53 967 860 * 477 192 126 55 chr4 113209529 113209711 -71078951 - LTR1B LTR ERV1 -214 612 418 1021 220 73 0 chr4 113209778 113210051 -71078611 - LTR1B LTR ERV1 -533 293 1 340 305 126 0 chr4 113210073 113210240 -71078422 - MIR SINE MIR -56 206 19 226 330 116 9 chr4 113211147 113211259 -71077403 - L2 LINE L2 -12 3301 3178 38 0 0 0 chr4 113211309 113211347 -71077315 + AT_rich Low_complexity Low_complexity 1 38 0 269 89 67 11 chr4 113211947 113212037 -71076625 + (TTATA)n Simple_repeat Simple_repeat 5 99 0 27 49 0 0 chr4 113212563 113212604 -71076058 + AT_rich Low_complexity Low_complexity 1 41 0 595 304 53 13 chr4 113212624 113212851 -71075811 + MIR SINE MIR 21 256 -6 644 350 77 28 chr4 113213038 113213467 -71075195 + LTR33 LTR ERVL 22 471 -50 2188 107 7 0 chr4 113213871 113214169 -71074493 + AluSp SINE Alu 9 308 -5 280 273 15 0 chr4 113214386 113214452 -71074210 + L2 LINE L2 3242 3308 -5 956 273 68 36 chr4 113215202 113215614 -71073048 - L2 LINE L2 -62 3251 2827 286 281 0 0 chr4 113215614 113215678 -71072984 + MER91B DNA MER1_type 1 64 -126 1239 296 86 25 chr4 113215863 113216342 -71072320 - L2 LINE L2 -1849 1465 958 21 0 0 0 chr4 113217065 113217086 -71071576 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 113217437 113217459 -71071203 + AT_rich Low_complexity Low_complexity 1 22 0 23 86 0 0 chr4 113218137 113218195 -71070467 + AT_rich Low_complexity Low_complexity 1 58 0 334 275 34 106 chr4 113218483 113218719 -71069943 - MLT1J LTR MaLR -193 318 100 299 308 103 14 chr4 113219413 113219559 -71069103 - MER58C DNA MER1_type -53 162 4 305 275 18 9 chr4 113219944 113220053 -71068609 + GA-rich Low_complexity Low_complexity 2 111 0 545 306 43 47 chr4 113220451 113220686 -71067976 - MIR SINE MIR 0 262 29 264 59 0 0 chr4 113221947 113221981 -71066681 + (T)n Simple_repeat Simple_repeat 1 34 0 263 212 0 45 chr4 113222081 113222147 -71066515 + MIR SINE MIR 83 145 -63 25 0 0 0 chr4 113223222 113223247 -71065415 + AT_rich Low_complexity Low_complexity 1 25 0 1979 182 53 15 chr4 113223633 113224045 -71064617 + MSTA LTR MaLR 1 428 0 496 331 19 0 chr4 113224388 113224542 -71064120 - L2 LINE L2 -568 2746 2590 3190 284 25 19 chr4 113224551 113225482 -71063180 + L1MB8 LINE L1 13 948 -5911 2011 231 88 13 chr4 113225497 113226100 -71062562 + L1MB8 LINE L1 1031 1678 -5181 2082 145 39 25 chr4 113226107 113226466 -71062196 - THE1B LTR MaLR 0 364 1 5175 107 11 0 chr4 113226468 113227191 -71061471 - THE1B-int LTR MaLR -7 1573 843 1083 92 20 0 chr4 113227190 113227343 -71061319 - THE1B-int LTR MaLR -1219 361 206 * 476 138 12 0 chr4 113227333 113227413 -71061249 - THE1B-int LTR MaLR -1285 295 215 * 4771 140 24 50 chr4 113227426 113228270 -71060392 - THE1B-int LTR MaLR -758 822 1 1831 154 123 3 chr4 113228270 113228595 -71060067 - THE1B LTR MaLR 0 364 1 1599 302 54 3 chr4 113228595 113229261 -71059401 + L1MB8 LINE L1 1672 2371 -4588 1729 90 9 0 chr4 113229261 113229484 -71059178 + AluSq SINE Alu 1 225 -88 214 147 0 0 chr4 113229484 113229518 -71059144 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 415 296 49 44 chr4 113229707 113230051 -71058611 + L1MB8 LINE L1 2473 2818 -4320 * 5447 249 44 18 chr4 113230047 113231809 -71056853 + L1MB8 LINE L1 3708 5515 -1442 3219 175 39 45 chr4 113231807 113232544 -71056118 + L1MB8 LINE L1 6255 6987 -2 * 390 234 204 42 chr4 113232545 113232712 -71055950 - L2 LINE L2 -712 2602 2409 1377 315 44 30 chr4 113232824 113233396 -71055266 + MLT1E LTR MaLR 1 580 -13 1946 172 17 0 chr4 113233531 113233879 -71054783 - L1MB1 LINE L1 -1 6167 5814 237 306 25 31 chr4 113235069 113235229 -71053433 + (CATATA)n Simple_repeat Simple_repeat 3 161 0 221 321 47 11 chr4 113235853 113235980 -71052682 - MIR SINE MIR -77 131 16 22 0 0 0 chr4 113236713 113236735 -71051927 + AT_rich Low_complexity Low_complexity 1 22 0 901 249 89 0 chr4 113236796 113237021 -71051641 - MIR SINE MIR -5 257 13 1308 240 6 45 chr4 113237417 113237771 -71050891 - MER58B DNA MER1_type 0 341 2 581 296 24 0 chr4 113237783 113237952 -71050710 + MER5A DNA MER1_type 17 189 0 4759 119 28 16 chr4 113238016 113238043 -71050619 - L1PA15 LINE L1 -6 6159 6134 2064 17 0 4 chr4 113238043 113238279 -71050383 + AluYa5 SINE Alu 77 311 0 4759 119 28 16 chr4 113238279 113239010 -71049652 - L1PA15 LINE L1 -31 6134 5392 384 215 32 0 chr4 113239180 113239273 -71049389 + MER112 DNA MER1_type 71 166 -94 355 273 90 62 chr4 113239894 113240183 -71048479 - L1ME4a LINE L1 -1 6120 5824 24 32 0 0 chr4 113240606 113240637 -71048025 + AT_rich Low_complexity Low_complexity 1 31 0 651 255 50 49 chr4 113240716 113240966 -71047696 + MIR SINE MIR 6 254 -8 26 0 0 0 chr4 113242985 113243011 -71045651 + AT_rich Low_complexity Low_complexity 1 26 0 409 297 55 14 chr4 113243061 113243206 -71045456 - MIR SINE MIR -108 154 4 334 318 8 8 chr4 113247795 113247921 -71040741 + MIR SINE MIR 124 249 -13 220 257 37 55 chr4 113248076 113248185 -71040477 + L2 LINE L2 2946 3052 -220 24 0 0 0 chr4 113248444 113248468 -71040194 + AT_rich Low_complexity Low_complexity 1 24 0 2150 132 0 0 chr4 113249299 113249609 -71039053 + AluSq SINE Alu 1 310 -3 30 27 0 0 chr4 113249770 113249807 -71038855 + AT_rich Low_complexity Low_complexity 1 37 0 1183 208 4 32 chr4 113249870 113250120 -71038542 + AluJo SINE Alu 1 243 -69 408 111 0 0 chr4 113250134 113250197 -71038465 + (GGAA)n Simple_repeat Simple_repeat 3 65 0 245 356 40 20 chr4 113250260 113250409 -71038253 - MER5A DNA MER1_type -1 188 37 1230 129 46 19 chr4 113250754 113251053 -71037609 + MSTA LTR MaLR 1 375 0 9343 142 6 37 chr4 113251055 113252684 -71035978 + MSTA-int LTR MaLR 3 1580 0 1686 162 133 16 chr4 113252684 113253066 -71035596 + MSTA LTR MaLR 1 427 -1 1888 124 0 35 chr4 113253066 113253400 -71035262 - AluSg SINE Alu 0 324 1 363 317 144 0 chr4 113254367 113254534 -71034128 - MIR SINE MIR 0 262 72 420 20 0 0 chr4 113255720 113255769 -71032893 + (TA)n Simple_repeat Simple_repeat 1 49 0 25 75 0 0 chr4 113257054 113257107 -71031555 + AT_rich Low_complexity Low_complexity 1 53 0 2580 64 0 0 chr4 113257292 113257603 -71031059 - AluY SINE Alu 0 311 1 408 279 73 0 chr4 113258345 113258481 -71030181 - L2 LINE L2 -8 3305 3160 492 298 66 60 chr4 113258500 113258802 -71029860 - L2 LINE L2 -557 2757 2454 24 67 0 0 chr4 113260795 113260840 -71027822 + AT_rich Low_complexity Low_complexity 1 45 0 1189 145 92 24 chr4 113260960 113261209 -71027453 - L1MC3 LINE L1 -40 7745 7480 864 184 37 46 chr4 113261217 113261434 -71027228 - L1MC2 LINE L1 -19 6325 6111 259 208 13 91 chr4 113261434 113261511 -71027151 + Tigger2 DNA MER2_type 1 71 -2647 276 208 0 0 chr4 113261548 113261601 -71027061 - MER8 DNA MER2_type -64 175 123 246 259 59 24 chr4 113263359 113263444 -71025218 + L2 LINE L2 3182 3269 -3 245 333 33 0 chr4 113264800 113264890 -71023772 + MIR SINE MIR 113 205 -57 1814 150 61 28 chr4 113265023 113265384 -71023278 + THE1C LTR MaLR 3 375 0 338 359 8 0 chr4 113267935 113268052 -71020610 + L2 LINE L2 3193 3310 -3 418 309 90 30 chr4 113268232 113268433 -71020229 + MIR SINE MIR 48 260 -2 189 107 0 0 chr4 113269472 113269500 -71019162 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1627 223 8 16 chr4 113269711 113270079 -71018583 - MLT1A1 LTR MaLR 0 365 1 22 56 0 0 chr4 113270569 113270605 -71018057 + AT_rich Low_complexity Low_complexity 1 36 0 227 330 50 0 chr4 113270851 113270951 -71017711 + MIR SINE MIR 37 141 -121 2729 77 21 0 chr4 113271027 113271594 -71017068 - L1PA8 LINE L1 -601 5571 4996 4506 86 0 2 chr4 113271594 113272202 -71016460 + L1PA8 LINE L1 5558 6172 0 2033 126 0 7 chr4 113272536 113272822 -71015840 + AluSg SINE Alu 9 292 -18 234 320 46 34 chr4 113272826 113272984 -71015678 - MIR SINE MIR -64 144 4 191 296 0 0 chr4 113273998 113274052 -71014610 - L2 LINE L2 -2 3311 3258 672 340 146 5 chr4 113274085 113274503 -71014159 - L2 LINE L2 0 3313 2837 190 270 16 32 chr4 113274485 113274548 -71014114 - L2 LINE L2 -76 3237 3176 * 1960 112 4 0 chr4 113274737 113275069 -71013593 + AluSx SINE Alu 45 377 0 247 369 156 24 chr4 113275168 113275846 -71012816 - L2 LINE L2 -488 2826 2059 240 111 0 0 chr4 113275856 113275892 -71012770 + (TAA)n Simple_repeat Simple_repeat 3 38 0 275 267 41 68 chr4 113275954 113276100 -71012562 - MIR SINE MIR -47 215 74 209 240 240 0 chr4 113276079 113276175 -71012487 - MIR SINE MIR -32 230 112 * 2998 43 16 0 chr4 113277065 113277440 -71011222 - L1P LINE L1 -3914 2232 1852 12093 26 0 0 chr4 113277441 113279640 -71009022 + L1PA3 LINE L1 3952 6153 -2 26 50 0 0 chr4 113280851 113280891 -71007771 + AT_rich Low_complexity Low_complexity 1 40 0 4142 132 10 32 chr4 113281566 113282294 -71006368 + L1MA3 LINE L1 5577 6288 -17 201 147 0 0 chr4 113282294 113282328 -71006334 + (TA)n Simple_repeat Simple_repeat 1 34 0 17244 180 47 53 chr4 113282358 113285927 -71002735 + ERVL LTR ERVL 1874 5419 -345 294 29 0 0 chr4 113285930 113285965 -71002697 + (TG)n Simple_repeat Simple_repeat 2 36 0 28 0 0 0 chr4 113287068 113287096 -71001566 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr4 113287349 113287384 -71001278 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr4 113287702 113287730 -71000932 + AT_rich Low_complexity Low_complexity 1 28 0 911 232 182 24 chr4 113288591 113288931 -70999731 + MSTD LTR MaLR 1 394 -2 1818 263 19 8 chr4 113288932 113289415 -70999247 + MSTD-int LTR MaLR 2 489 -1246 * 3696 130 11 8 chr4 113289404 113290154 -70998508 + L1PB1 LINE L1 5048 5795 -356 237 158 53 0 chr4 113290154 113290211 -70998451 + (TA)n Simple_repeat Simple_repeat 2 61 0 274 118 24 101 chr4 113290227 113290396 -70998266 + (CATATA)n Simple_repeat Simple_repeat 6 161 0 401 236 19 62 chr4 113290449 113290826 -70997836 + (CATATA)n Simple_repeat Simple_repeat 1 360 0 208 299 54 0 chr4 113290785 113290952 -70997710 + (TA)n Simple_repeat Simple_repeat 2 177 0 * 312 264 61 0 chr4 113291301 113291449 -70997213 + (TA)n Simple_repeat Simple_repeat 1 157 0 2350 90 8 54 chr4 113291457 113291578 -70997084 + L1PB1 LINE L1 5782 5907 -244 2097 154 28 14 chr4 113291578 113291936 -70996726 + THE1B LTR MaLR 1 363 -1 2350 90 8 54 chr4 113291936 113292146 -70996516 + L1PB1 LINE L1 5907 6095 -56 2291 102 3 0 chr4 113292146 113292450 -70996212 + AluSp SINE Alu 1 305 -8 2350 90 8 54 chr4 113292450 113292505 -70996157 + L1PB1 LINE L1 6095 6151 0 3956 255 78 33 chr4 113292518 113293720 -70994942 + MSTD-int LTR MaLR 480 1735 0 1210 247 87 11 chr4 113293720 113294088 -70994574 + MSTD LTR MaLR 1 396 0 261 83 0 0 chr4 113295373 113295409 -70993253 + (CA)n Simple_repeat Simple_repeat 2 37 0 1940 129 3 23 chr4 113296714 113297017 -70991645 + AluSp SINE Alu 1 297 -16 502 363 55 4 chr4 113297756 113298029 -70990633 - LTR33 LTR ERVL 0 521 235 365 341 110 8 chr4 113298077 113298341 -70990321 - L2 LINE L2 -1513 1801 1511 181 313 84 24 chr4 113298367 113298450 -70990212 - MER5A DNA MER1_type -79 110 23 189 313 184 41 chr4 113298725 113298872 -70989790 - L2 LINE L2 -2911 403 236 183 80 0 0 chr4 113300171 113300196 -70988466 + (TTG)n Simple_repeat Simple_repeat 2 26 0 237 65 0 0 chr4 113302060 113302091 -70986571 + (TA)n Simple_repeat Simple_repeat 1 31 0 1480 142 150 0 chr4 113302091 113302344 -70986318 - AluJb SINE Alu -15 297 7 32 81 0 0 chr4 113302385 113302459 -70986203 + AT_rich Low_complexity Low_complexity 1 74 0 21 0 0 0 chr4 113302533 113302554 -70986108 + AT_rich Low_complexity Low_complexity 1 21 0 1761 241 51 24 chr4 113302913 113303407 -70985255 + LTR53 LTR ERVL 13 519 0 28 0 0 0 chr4 113303407 113303435 -70985227 + AT_rich Low_complexity Low_complexity 1 28 0 1128 304 91 14 chr4 113303577 113304008 -70984654 + LTR16B LTR ERVL 1 464 0 45 19 0 0 chr4 113305284 113305336 -70983326 + AT_rich Low_complexity Low_complexity 1 52 0 222 291 18 0 chr4 113307010 113307065 -70981597 + L2 LINE L2 3217 3272 0 1607 197 10 13 chr4 113307629 113307928 -70980734 + AluJb SINE Alu 1 298 -14 21 0 0 0 chr4 113308539 113308560 -70980102 + AT_rich Low_complexity Low_complexity 1 21 0 195 246 0 0 chr4 113308906 113308963 -70979699 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 25 51 0 0 chr4 113308977 113309016 -70979646 + AT_rich Low_complexity Low_complexity 1 39 0 25 75 0 0 chr4 113309124 113309177 -70979485 + AT_rich Low_complexity Low_complexity 1 53 0 1611 229 110 68 chr4 113309553 113310242 -70978420 + L1MC5 LINE L1 6673 7390 -571 232 403 0 0 chr4 113310866 113310938 -70977724 - L2 LINE L2 -5 3267 3196 3315 182 48 26 chr4 113310975 113311662 -70977000 + MER44D DNA MER2_type 4 705 0 378 263 26 18 chr4 113311741 113311855 -70976807 - MER119 DNA MER1_type 0 583 469 24 0 0 0 chr4 113312209 113312233 -70976429 + AT_rich Low_complexity Low_complexity 1 24 0 323 281 106 25 chr4 113312580 113312740 -70975922 + MIR SINE MIR 78 250 -12 313 247 26 52 chr4 113313577 113313731 -70974931 + L1MEd LINE L1 698 847 -5272 548 325 45 19 chr4 113313760 113314028 -70974634 + L1ME LINE L1 5367 5641 -521 340 311 69 102 chr4 113314054 113314417 -70974245 + L1MEd LINE L1 318 668 -5451 314 222 56 32 chr4 113314674 113314800 -70973862 - L2 LINE L2 -1604 1710 1582 338 317 25 0 chr4 113314864 113314984 -70973678 + LTR16A1 LTR ERVL 1 123 -334 269 254 116 14 chr4 113315074 113315212 -70973450 + LTR16A1 LTR ERVL 255 406 -51 1810 251 97 72 chr4 113315258 113317491 -70971171 + Charlie2a DNA MER1_type 73 2386 -476 463 34 0 0 chr4 113317553 113317612 -70971050 - L1M2 LINE L1 -869 5431 5373 1839 111 0 4 chr4 113317612 113317874 -70970788 - AluSx SINE Alu -51 261 1 298 206 29 0 chr4 113318017 113318085 -70970577 - Charlie2 DNA MER1_type -924 1938 1869 612 276 83 45 chr4 113318092 113318404 -70970258 - Charlie2 DNA MER1_type -2457 325 2 209 280 341 24 chr4 113318468 113318764 -70969898 - L2 LINE L2 -2086 1228 839 190 79 26 26 chr4 113319339 113319377 -70969285 + (CA)n Simple_repeat Simple_repeat 2 39 0 318 200 35 0 chr4 113320236 113320321 -70968341 - L1MB4 LINE L1 -1 6179 6092 3528 186 9 31 chr4 113320332 113321069 -70967593 - L1MA4 LINE L1 -280 6020 5300 205 163 0 47 chr4 113321329 113321346 -70967316 + (TTCA)n Simple_repeat Simple_repeat 1 17 -24 2192 127 52 3 chr4 113321346 113321693 -70966969 + THE1B LTR MaLR 1 364 0 205 163 0 47 chr4 113321693 113321718 -70966944 + (TTCA)n Simple_repeat Simple_repeat 17 41 0 39 60 0 0 chr4 113323015 113323082 -70965580 + AT_rich Low_complexity Low_complexity 1 67 0 22 56 0 0 chr4 113323473 113323509 -70965153 + AT_rich Low_complexity Low_complexity 1 36 0 3349 155 10 2 chr4 113323826 113324348 -70964314 + MER1A DNA MER1_type 2 527 0 1579 173 36 4 chr4 113325002 113325280 -70963382 + AluJb SINE Alu 1 287 -25 338 350 14 0 chr4 113326256 113326396 -70962266 + GA-rich Low_complexity Low_complexity 1 142 0 495 33 0 0 chr4 113326631 113326692 -70961970 + (CA)n Simple_repeat Simple_repeat 1 61 0 208 227 0 0 chr4 113326884 113326928 -70961734 + (TATG)n Simple_repeat Simple_repeat 4 47 0 23 0 0 0 chr4 113327831 113327854 -70960808 + AT_rich Low_complexity Low_complexity 1 23 0 216 0 0 0 chr4 113327913 113327937 -70960725 + (CA)n Simple_repeat Simple_repeat 2 25 0 26 30 0 0 chr4 113329486 113329519 -70959143 + AT_rich Low_complexity Low_complexity 1 33 0 34 24 0 0 chr4 113329737 113329778 -70958884 + AT_rich Low_complexity Low_complexity 1 41 0 6140 65 55 12 chr4 113329874 113330739 -70957923 + L1PA8 LINE L1 5264 6166 -6 390 308 60 53 chr4 113331376 113331678 -70956984 + L1M4 LINE L1 5094 5397 -749 24 0 0 0 chr4 113333018 113333042 -70955620 + AT_rich Low_complexity Low_complexity 1 24 0 269 307 133 36 chr4 113334140 113334306 -70954356 - MIR SINE MIR -35 227 46 280 346 46 15 chr4 113334327 113334457 -70954205 + MIR SINE MIR 21 154 -108 2526 59 0 0 chr4 113336681 113337001 -70951661 - L1PA5 LINE L1 0 6154 5835 1972 112 3 37 chr4 113337464 113337786 -70950876 + AluY SINE Alu 1 311 0 4536 124 29 9 chr4 113338289 113338562 -70950100 + L1PA13 LINE L1 5188 5454 -709 1697 148 49 4 chr4 113338562 113338826 -70949836 + AluSx SINE Alu 11 286 -26 4536 124 29 9 chr4 113338826 113339366 -70949296 + L1PA13 LINE L1 5454 6017 -146 2068 132 0 46 chr4 113339761 113340088 -70948574 + AluSx SINE Alu 1 312 0 378 0 0 0 chr4 113340215 113340257 -70948405 + (CA)n Simple_repeat Simple_repeat 1 42 0 428 278 153 0 chr4 113340902 113341111 -70947551 + L1M4c LINE L1 1250 1490 -4894 5103 177 43 10 chr4 113341127 113342882 -70945780 + L1MA8 LINE L1 4478 6291 0 21 0 0 0 chr4 113342974 113342995 -70945667 + AT_rich Low_complexity Low_complexity 1 21 0 2279 102 3 0 chr4 113344441 113344744 -70943918 + AluSg1 SINE Alu 1 304 -5 24 53 0 0 chr4 113346254 113346292 -70942370 + AT_rich Low_complexity Low_complexity 1 38 0 1168 178 38 5 chr4 113347038 113347251 -70941411 - MSTB LTR MaLR 0 426 207 1759 134 3 10 chr4 113347260 113347550 -70941112 + MST-int LTR MaLR 110 397 -1254 1528 129 4 13 chr4 113347550 113347775 -70940887 + AluSg1 SINE Alu 51 273 -36 358 258 0 0 chr4 113347803 113347892 -70940770 + MST-int LTR MaLR 391 479 -1172 399 171 98 0 chr4 113347892 113347974 -70940688 + MSTA LTR MaLR 339 428 0 2045 107 0 42 chr4 113348014 113348324 -70940338 + AluSc SINE Alu 4 300 -9 28 79 0 0 chr4 113348855 113348918 -70939744 + AT_rich Low_complexity Low_complexity 1 63 0 2021 124 0 0 chr4 113349067 113349378 -70939284 - AluSx SINE Alu 0 311 1 23 0 0 0 chr4 113350032 113350055 -70938607 + AT_rich Low_complexity Low_complexity 1 23 0 1648 184 0 28 chr4 113352114 113352435 -70936227 + AluJo SINE Alu 1 312 0 2175 128 54 3 chr4 113352525 113352878 -70935784 + THE1C LTR MaLR 5 375 0 9704 121 51 5 chr4 113352886 113354383 -70934279 + THE1C-int LTR MaLR 9 1574 -6 2182 137 41 14 chr4 113354389 113354753 -70933909 + THE1C LTR MaLR 1 374 -1 533 219 28 51 chr4 113354806 113354984 -70933678 - MER112 DNA MER1_type -85 175 2 216 205 0 72 chr4 113356381 113356464 -70932198 + T-rich Low_complexity Low_complexity 2 78 0 22 35 0 0 chr4 113356917 113356946 -70931716 + AT_rich Low_complexity Low_complexity 1 29 0 218 383 32 21 chr4 113357747 113357841 -70930821 + L2 LINE L2 2977 3071 -201 22 35 0 0 chr4 113358887 113358916 -70929746 + AT_rich Low_complexity Low_complexity 1 29 0 259 195 41 3 chr4 113358916 113358998 -70929664 - L1MB1 LINE L1 0 6168 6087 21 0 0 0 chr4 113359276 113359297 -70929365 + AT_rich Low_complexity Low_complexity 1 21 0 336 305 38 67 chr4 113361213 113361423 -70927239 - LTR67 LTR ERVL -349 208 5 335 287 108 23 chr4 113361501 113361901 -70926761 + L1MC1 LINE L1 1919 2304 -3913 505 313 66 38 chr4 113361934 113362151 -70926511 + L1MC1 LINE L1 2446 2655 -3560 2395 81 0 0 chr4 113362151 113362448 -70926214 + AluY SINE Alu 9 305 -6 505 313 66 38 chr4 113362448 113362737 -70925925 + L1MC1 LINE L1 2655 2967 -3248 472 273 82 56 chr4 113362747 113363521 -70925141 + L1MC1 LINE L1 3078 3876 -2339 2081 159 156 5 chr4 113363521 113363924 -70924738 + MLT1C LTR MaLR 3 466 -1 472 273 82 56 chr4 113363924 113363971 -70924691 + L1MC1 LINE L1 3876 3920 -2295 5434 313 102 29 chr4 113364125 113367055 -70921607 + L2 LINE L2 106 3258 -55 4987 207 43 38 chr4 113367346 113367550 -70921112 + L1MC1 LINE L1 4713 4914 -1488 1566 187 0 41 chr4 113367550 113367866 -70920796 - AluJo SINE Alu -7 305 3 4987 207 43 38 chr4 113367866 113369347 -70919315 + L1MC1 LINE L1 4914 6402 0 185 315 110 0 chr4 113369857 113369930 -70918732 - L2 LINE L2 -787 2527 2447 24 0 0 0 chr4 113370400 113370424 -70918238 + AT_rich Low_complexity Low_complexity 1 24 0 197 395 43 6 chr4 113370437 113370599 -70918063 - L2 LINE L2 -1345 1969 1802 2165 124 3 0 chr4 113371563 113371870 -70916792 - AluSq SINE Alu -5 308 1 22 35 0 0 chr4 113372114 113372143 -70916519 + AT_rich Low_complexity Low_complexity 1 29 0 238 281 0 0 chr4 113372166 113372223 -70916439 - MIR SINE MIR -75 133 77 21 0 0 0 chr4 113372233 113372254 -70916408 + AT_rich Low_complexity Low_complexity 1 21 0 338 327 111 0 chr4 113373804 113373966 -70914696 - MIR SINE MIR -44 218 39 467 342 173 12 chr4 113374479 113374821 -70913841 - L3 LINE CR1 -27 1550 1154 295 303 10 0 chr4 113375125 113375224 -70913438 - L3 LINE CR1 -553 1024 925 1521 213 40 15 chr4 113375259 113375587 -70913075 + MER2 DNA MER2_type 1 336 -9 1447 180 14 35 chr4 113375737 113376026 -70912636 + AluJo SINE Alu 9 291 -21 342 269 238 44 chr4 113376410 113376637 -70912025 + L2 LINE L2 3031 3301 -12 32 26 0 0 chr4 113377403 113377442 -70911220 + AT_rich Low_complexity Low_complexity 1 39 0 575 146 31 0 chr4 113377801 113377931 -70910731 + GA-rich Low_complexity Low_complexity 3 136 0 195 238 10 30 chr4 113377944 113378045 -70910617 + A-rich Low_complexity Low_complexity 4 102 0 24 0 0 0 chr4 113380293 113380317 -70908345 + AT_rich Low_complexity Low_complexity 1 24 0 27 73 0 0 chr4 113380426 113380481 -70908181 + AT_rich Low_complexity Low_complexity 1 55 0 228 111 0 0 chr4 113380936 113380972 -70907690 + (CA)n Simple_repeat Simple_repeat 1 36 0 38 22 0 0 chr4 113384044 113384089 -70904573 + AT_rich Low_complexity Low_complexity 1 45 0 333 0 0 0 chr4 113387820 113387857 -70900805 + (TG)n Simple_repeat Simple_repeat 2 38 0 228 240 31 73 chr4 113388144 113388240 -70900422 + L2 LINE L2 3221 3312 -1 25 83 0 0 chr4 113388478 113388538 -70900124 + AT_rich Low_complexity Low_complexity 1 60 0 24 32 0 0 chr4 113388770 113388801 -70899861 + AT_rich Low_complexity Low_complexity 1 31 0 222 283 11 43 chr4 113390571 113390663 -70897999 - MIR SINE MIR -60 202 114 341 265 95 65 chr4 113391229 113391429 -70897233 + MER112 DNA MER1_type 55 260 0 21 36 0 0 chr4 113391736 113391764 -70896898 + AT_rich Low_complexity Low_complexity 1 28 0 352 298 15 15 chr4 113392130 113392261 -70896401 + MLT1H LTR MaLR 56 186 -363 1785 179 12 20 chr4 113393522 113393868 -70894794 - MER2 DNA MER2_type -1 343 1 21 0 0 0 chr4 113394303 113394324 -70894338 + AT_rich Low_complexity Low_complexity 1 21 0 2351 81 0 28 chr4 113394330 113394650 -70894012 + AluY SINE Alu 1 311 0 238 358 119 0 chr4 113394694 113394803 -70893859 - MIR SINE MIR -125 137 16 38 0 0 0 chr4 113396217 113396255 -70892407 + AT_rich Low_complexity Low_complexity 1 38 0 282 213 75 0 chr4 113396642 113396722 -70891940 + (TATATG)n Simple_repeat Simple_repeat 4 89 0 26 50 0 0 chr4 113396827 113396867 -70891795 + AT_rich Low_complexity Low_complexity 1 40 0 3406 180 9 11 chr4 113396880 113397524 -70891138 - L1PB4 LINE L1 -55 6101 5459 781 190 120 8 chr4 113397521 113397653 -70891009 + L1P5 LINE L1 5156 5272 -884 * 201 74 0 0 chr4 113397653 113397680 -70890982 + (CAA)n Simple_repeat Simple_repeat 1 27 0 781 190 120 8 chr4 113397680 113397840 -70890822 + L1P5 LINE L1 5272 5472 -684 935 129 0 7 chr4 113397865 113398004 -70890658 - AluSc SINE Alu -26 283 146 486 287 79 4 chr4 113398029 113398308 -70890354 - MER114 LTR ERV -3 645 346 23 0 0 0 chr4 113398321 113398344 -70890318 + AT_rich Low_complexity Low_complexity 1 23 0 468 165 22 0 chr4 113398354 113398445 -70890217 - L1MA3 LINE L1 -5 6300 6208 1027 226 52 61 chr4 113398842 113399250 -70889412 + MER110A LTR ERV1 49 452 -16 439 370 91 17 chr4 113399252 113399844 -70888818 + L1PB4 LINE L1 103 738 -6471 10400 243 36 56 chr4 113399922 113401513 -70887149 + L1PB4 LINE L1 1154 2775 -4433 2175 125 54 20 chr4 113401513 113401865 -70886797 + THE1B LTR MaLR 1 364 0 10400 243 36 56 chr4 113401865 113405419 -70883243 + L1PB4 LINE L1 2775 6251 -957 225 0 0 0 chr4 113405419 113405444 -70883218 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 10400 243 36 56 chr4 113405444 113405584 -70883078 + L1PB4 LINE L1 6251 6392 -816 1238 161 0 18 chr4 113405586 113405810 -70882852 + AluSg/x SINE Alu 93 312 0 4480 155 21 9 chr4 113405825 113406614 -70882048 + L1PB4 LINE L1 6418 7216 -2 26 30 0 0 chr4 113406614 113406647 -70882015 + AT_rich Low_complexity Low_complexity 1 33 0 1441 328 148 6 chr4 113406647 113407509 -70881153 - L2 LINE L2 -1436 1878 894 556 239 39 67 chr4 113407687 113407742 -70880920 - L2 LINE L2 -2422 892 837 1558 229 71 41 chr4 113407742 113408232 -70880430 + MLT1D LTR MaLR 1 505 0 556 239 39 67 chr4 113408232 113408384 -70880278 - L2 LINE L2 -2477 837 691 2478 107 16 16 chr4 113408384 113408757 -70879905 + THE1C LTR MaLR 1 373 -2 556 239 39 67 chr4 113408757 113408803 -70879859 - L2 LINE L2 -2623 691 645 1405 221 10 7 chr4 113409143 113409442 -70879220 - AluJb SINE Alu -12 300 1 21 36 0 0 chr4 113409676 113409704 -70878958 + AT_rich Low_complexity Low_complexity 1 28 0 1941 165 32 20 chr4 113410177 113410582 -70878080 - L1MA8 LINE L1 -6 6285 5876 476 48 0 0 chr4 113410951 113411013 -70877649 - L1P LINE L1 -968 5178 5117 361 365 71 62 chr4 113412692 113412878 -70875784 - L2 LINE L2 -22 3250 3067 2207 75 27 0 chr4 113412878 113413002 -70875660 + AluY SINE Alu 1 120 -191 423 0 0 0 chr4 113413002 113413049 -70875613 + (TAA)n Simple_repeat Simple_repeat 3 49 0 2207 75 27 0 chr4 113413049 113413219 -70875443 + AluY SINE Alu 120 303 -8 361 365 71 62 chr4 113413219 113413278 -70875384 - L2 LINE L2 -205 3067 3010 1798 87 0 8 chr4 113413278 113413520 -70875142 + AluSp SINE Alu 1 240 -73 361 365 71 62 chr4 113413520 113413626 -70875036 - L2 LINE L2 -262 3010 2895 263 33 0 0 chr4 113413854 113413884 -70874778 - U6 snRNA snRNA -77 30 1 375 200 89 0 chr4 113413896 113413986 -70874676 - L1MB2 LINE L1 0 6171 6074 334 228 76 0 chr4 113414275 113414367 -70874295 - L2 LINE L2 0 3272 3174 331 304 120 0 chr4 113415196 113415321 -70873341 + MIR SINE MIR 2 141 -121 3550 22 0 0 chr4 113415705 113416121 -70872541 + L1PA2 LINE L1 5740 6155 0 21 0 0 0 chr4 113416912 113416933 -70871729 + AT_rich Low_complexity Low_complexity 1 21 0 180 308 26 26 chr4 113416994 113417072 -70871590 - MIR SINE MIR 0 262 185 285 272 118 50 chr4 113417199 113417400 -70871262 + MLT1K LTR MaLR 373 562 -26 256 270 131 29 chr4 113417693 113417830 -70870832 + MIR SINE MIR 51 201 -61 1454 218 3 10 chr4 113417831 113418138 -70870524 + MLT1C LTR MaLR 1 305 -162 872 210 0 6 chr4 113418174 113418350 -70870312 - MER41C LTR ERV1 0 554 380 643 171 0 9 chr4 113418358 113418469 -70870193 + MLT1C LTR MaLR 358 467 0 228 263 18 35 chr4 113418609 113418723 -70869939 + (TA)n Simple_repeat Simple_repeat 2 113 0 1053 238 36 0 chr4 113419268 113419491 -70869171 + MLT2B1 LTR ERVL 284 514 -6 209 227 0 0 chr4 113420759 113420803 -70867859 + (TTAA)n Simple_repeat Simple_repeat 4 47 0 204 302 57 28 chr4 113422910 113423016 -70865646 + MIR SINE MIR 38 146 -62 244 282 44 61 chr4 113423133 113423314 -70865348 + L2 LINE L2 2994 3171 -142 947 175 13 75 chr4 113423774 113424002 -70864660 - MER20 DNA MER1_type -1 218 5 21 57 0 0 chr4 113424150 113424185 -70864477 + AT_rich Low_complexity Low_complexity 1 35 0 774 143 0 0 chr4 113424466 113424585 -70864077 + AluSg/x SINE Alu 180 298 -14 184 291 63 13 chr4 113425003 113425082 -70863580 - MIR SINE MIR -48 214 132 286 301 193 1 chr4 113425209 113425472 -70863190 + L2 LINE L2 2929 3256 -16 184 330 75 38 chr4 113427423 113427529 -70861133 + MIR SINE MIR 28 137 -125 486 96 0 0 chr4 113428875 113428948 -70859714 + (CA)n Simple_repeat Simple_repeat 2 74 0 300 333 17 17 chr4 113429449 113429566 -70859096 - MIR SINE MIR -144 118 2 239 350 58 8 chr4 113432025 113432145 -70856517 - L2 LINE L2 -52 3261 3136 202 330 21 99 chr4 113432250 113432483 -70856179 - L2 LINE L2 -347 2967 2753 643 226 23 6 chr4 113432832 113433009 -70855653 - L1MA8 LINE L1 -7 6284 6105 265 349 120 62 chr4 113433009 113433576 -70855086 - L2 LINE L2 -952 2362 1763 271 223 70 102 chr4 113433947 113434162 -70854500 - MER112 DNA MER1_type -43 217 10 5031 109 40 9 chr4 113434889 113435697 -70852965 - L1MA2 LINE L1 0 6304 5472 220 111 37 0 chr4 113435867 113435921 -70852741 + (TA)n Simple_repeat Simple_repeat 2 57 0 2274 258 150 24 chr4 113436594 113437154 -70851508 - L1MDb LINE L1 -4621 1785 1297 1532 213 3 10 chr4 113437154 113437464 -70851198 - AluJb SINE Alu -4 308 1 2274 258 150 24 chr4 113437464 113438423 -70850239 - L1MDb LINE L1 -5109 1297 22 950 234 185 3 chr4 113438702 113439031 -70849631 - MLT1B LTR MaLR -1 389 1 344 277 40 0 chr4 113439031 113439132 -70849530 + L2 LINE L2 2401 2505 -809 2176 97 10 0 chr4 113439158 113439447 -70849215 + AluSx SINE Alu 16 307 -5 753 190 0 54 chr4 113439547 113439731 -70848931 - pTR5 LTR ERV1 -1518 920 747 190 256 23 0 chr4 113439731 113439774 -70848888 - MER5B DNA MER1_type -134 44 1 29 0 0 0 chr4 113439805 113439834 -70848828 + AT_rich Low_complexity Low_complexity 1 29 0 458 275 20 20 chr4 113440676 113440931 -70847731 + L1ME LINE L1 5188 5447 -704 26 74 0 0 chr4 113442276 113442330 -70846332 + AT_rich Low_complexity Low_complexity 1 54 0 21 0 0 0 chr4 113442544 113442565 -70846097 + AT_rich Low_complexity Low_complexity 1 21 0 2732 13 0 0 chr4 113443071 113443376 -70845286 + AluYa5 SINE Alu 1 305 -6 21 57 0 0 chr4 113443627 113443662 -70845000 + AT_rich Low_complexity Low_complexity 1 35 0 2015 314 117 23 chr4 113443796 113445172 -70843490 - L2 LINE L2 -108 3205 1710 343 215 9 9 chr4 113446048 113446155 -70842507 + (TA)n Simple_repeat Simple_repeat 1 107 0 26 30 0 0 chr4 113446162 113446195 -70842467 + AT_rich Low_complexity Low_complexity 1 33 0 438 167 167 0 chr4 113446219 113446321 -70842341 - L1MA8 LINE L1 -65 6226 6108 224 372 61 17 chr4 113447034 113447163 -70841499 + L2 LINE L2 1826 1967 -1347 1951 156 50 8 chr4 113447163 113447523 -70841139 - THE1C LTR MaLR 0 375 1 224 372 61 17 chr4 113447523 113447573 -70841089 + L2 LINE L2 1967 2013 -1301 5796 149 35 8 chr4 113447578 113448638 -70840024 - Tigger3b DNA MER2_type -139 1092 5 1962 82 14 7 chr4 113448750 113449029 -70839633 - L1PA11 LINE L1 -1 6173 5893 4673 155 22 82 chr4 113449088 113450124 -70838538 - L1MC1 LINE L1 -10 6323 5350 769 116 7 14 chr4 113450160 113450298 -70838364 - L1MA4 LINE L1 -2 6298 6162 1591 139 30 30 chr4 113450298 113450599 -70838063 + L1MA4 LINE L1 5641 5941 -359 785 248 29 8 chr4 113450609 113450847 -70837815 - L1MC1 LINE L1 -774 5372 5130 597 293 235 10 chr4 113451107 113451418 -70837244 + L2 LINE L2 2933 3313 0 1685 258 50 14 chr4 113451430 113451931 -70836731 + LTR40a LTR ERVL 1 519 0 24 53 0 0 chr4 113453449 113453487 -70835175 + AT_rich Low_complexity Low_complexity 1 38 0 14920 200 27 6 chr4 113453487 113459084 -70829578 - L1PB1 LINE L1 -1 6866 991 4517 111 109 125 chr4 113459087 113460515 -70828147 - pTR5 LTR ERV1 0 2438 743 1719 244 109 8 chr4 113460515 113461101 -70827561 - L1PB1 LINE L1 -5869 994 350 1344 154 75 34 chr4 113461101 113461367 -70827295 + AluJo SINE Alu 10 286 -26 231 88 0 0 chr4 113461376 113461410 -70827252 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 21 0 0 0 chr4 113461616 113461637 -70827025 + AT_rich Low_complexity Low_complexity 1 21 0 30 27 0 0 chr4 113461995 113462032 -70826630 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr4 113462413 113462436 -70826226 + AT_rich Low_complexity Low_complexity 1 23 0 244 285 8 8 chr4 113462835 113462965 -70825697 + CT-rich Low_complexity Low_complexity 4 133 0 289 352 78 8 chr4 113464585 113464713 -70823949 + L3 LINE CR1 953 1089 -488 509 189 0 0 chr4 113465571 113465666 -70822996 + AluJ/FLAM SINE Alu 3 97 -215 729 138 0 9 chr4 113465678 113465787 -70822875 + FRAM SINE Alu 20 127 -49 1834 176 0 0 chr4 113465904 113466211 -70822451 + AluJb SINE Alu 1 307 -5 1472 198 0 27 chr4 113466457 113466783 -70821879 - AluJb SINE Alu 0 318 1 5333 167 9 5 chr4 113467335 113468298 -70820364 + L1P5 LINE L1 4170 5142 -1009 2090 128 0 0 chr4 113468298 113468602 -70820060 + AluSx SINE Alu 1 304 -8 5333 167 9 5 chr4 113468602 113469255 -70819407 + L1P5 LINE L1 5142 5791 -360 265 68 27 41 chr4 113469255 113469328 -70819334 + (TA)n Simple_repeat Simple_repeat 1 72 0 311 125 18 0 chr4 113469342 113469398 -70819264 + L1P5 LINE L1 5782 5838 -313 194 78 59 20 chr4 113469398 113469449 -70819213 + (TA)n Simple_repeat Simple_repeat 1 53 0 2125 136 31 0 chr4 113469454 113469806 -70818856 + L1PB1 LINE L1 5783 6145 -6 3625 60 0 0 chr4 113469811 113470297 -70818365 + L1PA6 LINE L1 5685 6170 0 237 108 0 0 chr4 113470333 113470370 -70818292 + (T)n Simple_repeat Simple_repeat 1 37 0 446 304 22 17 chr4 113471132 113471313 -70817349 - MIR SINE MIR -11 251 70 22 35 0 0 chr4 113471967 113471996 -70816666 + AT_rich Low_complexity Low_complexity 1 29 0 251 106 43 0 chr4 113472897 113472944 -70815718 + (TCTCTG)n Simple_repeat Simple_repeat 4 52 0 365 240 87 51 chr4 113474067 113474263 -70814399 + L1MC5 LINE L1 7598 7800 -161 969 148 0 0 chr4 113474850 113474992 -70813670 + THE1-int LTR MaLR 1001 1142 -438 189 0 0 0 chr4 113475136 113475157 -70813505 + (T)n Simple_repeat Simple_repeat 1 21 0 21 95 0 0 chr4 113475840 113475903 -70812759 + AT_rich Low_complexity Low_complexity 1 63 0 24 0 0 0 chr4 113476297 113476321 -70812341 + AT_rich Low_complexity Low_complexity 1 24 0 404 341 16 0 chr4 113476338 113476461 -70812201 + L3 LINE CR1 934 1058 -519 308 299 114 48 chr4 113476852 113477019 -70811643 - MIR3 SINE MIR -8 200 23 207 139 0 0 chr4 113477081 113477117 -70811545 + (TA)n Simple_repeat Simple_repeat 2 37 0 238 222 0 19 chr4 113478671 113478725 -70809937 + (TATATG)n Simple_repeat Simple_repeat 5 57 0 338 276 97 8 chr4 113479085 113479219 -70809443 + MER110 LTR ERV1 311 456 -35 1245 203 110 21 chr4 113479603 113479938 -70808724 + MLT1A1 LTR MaLR 1 365 0 295 280 122 90 chr4 113479974 113480285 -70808377 + L2 LINE L2 2985 3305 -8 288 308 161 0 chr4 113480525 113480668 -70807994 + L2 LINE L2 3113 3278 -35 258 378 135 4 chr4 113480768 113480998 -70807664 + L3 LINE CR1 1299 1558 -19 523 298 84 28 chr4 113481504 113481719 -70806943 - MLT1K LTR MaLR -2 586 360 284 317 29 19 chr4 113483203 113483307 -70805355 + MIR SINE MIR 98 202 -60 23 0 0 0 chr4 113483813 113483836 -70804826 + AT_rich Low_complexity Low_complexity 1 23 0 438 69 0 0 chr4 113483922 113483980 -70804682 + (CA)n Simple_repeat Simple_repeat 2 59 0 26 50 0 0 chr4 113484598 113484638 -70804024 + AT_rich Low_complexity Low_complexity 1 40 0 23 68 0 0 chr4 113484767 113484811 -70803851 + AT_rich Low_complexity Low_complexity 1 44 0 306 0 0 0 chr4 113485306 113485340 -70803322 + (CA)n Simple_repeat Simple_repeat 2 35 0 2209 99 6 0 chr4 113486903 113487227 -70801435 + L1PA13 LINE L1 5838 6163 0 36 40 0 0 chr4 113487455 113487505 -70801157 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr4 113487612 113487633 -70801029 + AT_rich Low_complexity Low_complexity 1 21 0 186 182 26 13 chr4 113488628 113488705 -70799957 + (TA)n Simple_repeat Simple_repeat 1 78 0 344 91 18 0 chr4 113489533 113489588 -70799074 + MADE1 DNA Mariner 25 80 0 309 297 126 19 chr4 113490101 113490331 -70798331 + MIR SINE MIR 3 256 -6 22 35 0 0 chr4 113491236 113491265 -70797397 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr4 113493330 113493354 -70795308 + AT_rich Low_complexity Low_complexity 1 24 0 1223 120 0 30 chr4 113493849 113494049 -70794613 - MER107 DNA MER1_type 0 197 4 23 0 0 0 chr4 113494057 113494080 -70794582 + AT_rich Low_complexity Low_complexity 1 23 0 255 432 34 0 chr4 113494385 113494533 -70794129 + L2 LINE L2 2933 3085 -187 634 122 0 10 chr4 113495551 113495649 -70793013 + MER4A LTR ERV1 1 97 -567 * 1658 114 159 127 chr4 113495646 113496041 -70792621 + MER4A LTR ERV1 257 664 0 948 282 10 43 chr4 113498702 113499055 -70789607 - LTR68 LTR ERV1 0 740 297 7923 242 52 12 chr4 113499182 113501455 -70787207 - L1 LINE L1 -1065 5081 2718 444 326 26 43 chr4 113501452 113501682 -70786980 - L1PA12 LINE L1 -4954 2620 2395 * 398 334 29 37 chr4 113501717 113502026 -70786636 - L1PA12 LINE L1 -5140 2441 2203 230 358 25 0 chr4 113502049 113502130 -70786532 - L1PA12 LINE L1 -6567 1007 925 711 321 119 36 chr4 113502373 113502651 -70786011 - L2 LINE L2 -5 3308 3054 1585 198 47 146 chr4 113502651 113503228 -70785434 + MLT2B1 LTR ERVL 1 520 0 711 321 119 36 chr4 113503228 113503764 -70784898 - L2 LINE L2 -259 3054 2418 270 283 151 0 chr4 113505346 113505452 -70783210 + MER101B LTR ERV1 10 131 -439 180 0 0 0 chr4 113505501 113505521 -70783141 + (A)n Simple_repeat Simple_repeat 1 20 0 200 360 192 0 chr4 113505969 113506094 -70782568 + MIR SINE MIR 104 252 -10 21 36 0 0 chr4 113508180 113508208 -70780454 + AT_rich Low_complexity Low_complexity 1 28 0 2061 119 10 0 chr4 113508834 113509129 -70779533 - AluSg SINE Alu -11 299 2 2817 3 0 0 chr4 113509574 113509882 -70778780 + AluYa5 SINE Alu 1 308 -3 2804 307 218 29 chr4 113510763 113511588 -70777074 + L2 LINE L2 617 1285 -2029 1669 182 7 10 chr4 113511588 113511884 -70776778 - AluJo SINE Alu -5 307 13 2804 307 218 29 chr4 113511884 113513024 -70775638 + L2 LINE L2 1285 2954 -360 609 221 119 147 chr4 113513024 113513336 -70775326 - MLT1D LTR MaLR -202 303 1 302 264 0 14 chr4 113513405 113513477 -70775185 + LTR40b LTR ERVL 13 83 -379 * 322 203 0 0 chr4 113513464 113513523 -70775139 + MLT1D LTR MaLR 447 505 0 323 241 36 12 chr4 113513849 113513932 -70774730 - MLT1J2 LTR MaLR -276 174 90 23 0 0 0 chr4 113514669 113514692 -70773970 + AT_rich Low_complexity Low_complexity 1 23 0 311 337 87 16 chr4 113514853 113515037 -70773625 + L2 LINE L2 3116 3312 -1 1761 185 61 6 chr4 113515821 113516167 -70772495 + MLT1A1 LTR MaLR 1 365 0 22 35 0 0 chr4 113516235 113516264 -70772398 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr4 113516796 113516828 -70771834 + AT_rich Low_complexity Low_complexity 1 32 0 2244 41 34 10 chr4 113517076 113517370 -70771292 - L1PA4 LINE L1 -1 6154 5854 284 375 29 7 chr4 113517878 113518014 -70770648 - MIR SINE MIR -109 153 15 799 295 69 18 chr4 113518232 113518587 -70770075 - MLT1G3 LTR MaLR -139 456 1 252 297 22 22 chr4 113518847 113518953 -70769709 + MIR SINE MIR 34 143 -65 206 242 48 16 chr4 113519137 113519199 -70769463 - MIR3 SINE MIR -28 180 117 1896 118 14 10 chr4 113519472 113519761 -70768901 + THE1C-int LTR MaLR 1291 1580 0 1699 132 96 42 chr4 113519761 113520117 -70768545 + THE1C LTR MaLR 1 375 0 236 118 69 29 chr4 113520487 113520582 -70768080 + (TA)n Simple_repeat Simple_repeat 1 102 -4 297 0 0 0 chr4 113520582 113520615 -70768047 + (CA)n Simple_repeat Simple_repeat 2 34 0 236 118 69 29 chr4 113520615 113520621 -70768041 + (TA)n Simple_repeat Simple_repeat 102 106 0 3332 173 32 58 chr4 113520831 113521577 -70767085 - L1PA13 LINE L1 -2185 3961 3235 6568 194 17 3 chr4 113521577 113523762 -70764900 + L1PA13 LINE L1 3964 6163 0 4473 176 33 54 chr4 113523763 113524528 -70764134 + L1MA8 LINE L1 4989 5766 -525 228 176 0 0 chr4 113524528 113524579 -70764083 - LTR66 LTR ERVL -166 444 394 4473 176 33 54 chr4 113524579 113525091 -70763571 + L1MA8 LINE L1 5766 6287 -4 21 36 0 0 chr4 113525131 113525159 -70763503 + AT_rich Low_complexity Low_complexity 1 28 0 1801 138 3 130 chr4 113525450 113525643 -70763019 + MER7A DNA MER2_type 6 123 -2915 3223 140 37 10 chr4 113525643 113526156 -70762506 + MER1A DNA MER1_type 1 527 0 1801 138 3 130 chr4 113526156 113526354 -70762308 + MER7A DNA MER2_type 123 345 -1 592 310 65 20 chr4 113527611 113527856 -70760806 + MIR SINE MIR 6 261 -1 642 40 20 10 chr4 113527988 113528087 -70760575 + (TCTA)n Simple_repeat Simple_repeat 1 100 0 22 35 0 0 chr4 113528412 113528441 -70760221 + AT_rich Low_complexity Low_complexity 1 29 0 223 323 116 26 chr4 113528889 113529044 -70759618 - MIR SINE MIR -34 228 60 193 337 11 53 chr4 113529166 113529261 -70759401 - MIR3 SINE MIR -26 182 92 22 88 0 0 chr4 113530165 113530222 -70758440 + AT_rich Low_complexity Low_complexity 1 57 0 225 321 94 9 chr4 113530645 113530751 -70757911 - L2 LINE L2 0 3272 3158 906 116 0 0 chr4 113530890 113531028 -70757634 + (GAA)n Simple_repeat Simple_repeat 2 139 0 1373 220 7 3 chr4 113531212 113531494 -70757168 + AluJo SINE Alu 1 283 -29 21 0 0 0 chr4 113533195 113533216 -70755446 + AT_rich Low_complexity Low_complexity 1 21 0 301 299 83 69 chr4 113533534 113533678 -70754984 - MER63A DNA MER1_type -18 192 47 368 381 50 25 chr4 113534061 113534339 -70754323 + L3 LINE CR1 1021 1305 -272 2295 85 0 0 chr4 113536411 113536704 -70751958 + AluY SINE Alu 1 293 -18 225 93 0 47 chr4 113536704 113536747 -70751915 + L1MA9 LINE L1 5748 5788 -517 2177 187 44 34 chr4 113536795 113537231 -70751431 + L1MA9 LINE L1 5797 6227 -85 207 0 0 0 chr4 113537231 113537254 -70751408 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 297 0 0 0 chr4 113537253 113537286 -70751376 + (TA)n Simple_repeat Simple_repeat 2 34 0 2177 187 44 34 chr4 113537254 113537352 -70751310 + L1MA9 LINE L1 6227 6304 -8 408 275 78 6 chr4 113537361 113537528 -70751134 - L1MEc LINE L1 -4945 1365 1187 641 114 0 0 chr4 113537583 113537688 -70750974 - AluY SINE Alu 0 311 207 599 315 110 29 chr4 113537690 113538135 -70750527 - L1MEc LINE L1 -5037 1082 602 23 54 0 0 chr4 113538665 113538702 -70749960 + AT_rich Low_complexity Low_complexity 1 37 0 323 197 16 16 chr4 113539277 113539338 -70749324 - MER2 DNA MER2_type -7 338 278 23 0 0 0 chr4 113539338 113539361 -70749301 + AT_rich Low_complexity Low_complexity 1 23 0 774 258 23 46 chr4 113539370 113539630 -70749032 + L1PB4 LINE L1 10 263 -6586 * 1886 227 31 14 chr4 113539627 113539853 -70748809 + L1PB4 LINE L1 3983 4204 -2644 258 32 0 0 chr4 113539853 113539884 -70748778 + (CAA)n Simple_repeat Simple_repeat 1 31 0 1886 227 31 14 chr4 113539884 113540213 -70748449 + L1PB4 LINE L1 4204 4547 -2301 4431 190 33 14 chr4 113540222 113541962 -70746700 + L1PB4 LINE L1 5090 6858 0 823 182 128 11 chr4 113542002 113542189 -70746473 - MER2 DNA MER2_type -136 209 1 3303 206 32 6 chr4 113542582 113543305 -70745357 + MSTB-int LTR MaLR 1 723 -928 2042 189 84 13 chr4 113543326 113543780 -70744882 + MSTB-int LTR MaLR 1166 1651 0 1711 153 57 129 chr4 113543782 113543988 -70744674 + MSTB LTR MaLR 3 160 -266 2325 84 0 3 chr4 113543988 113544287 -70744375 - AluY SINE Alu -13 298 1 1711 153 57 129 chr4 113544287 113544537 -70744125 + MSTB LTR MaLR 160 426 0 1072 259 44 49 chr4 113545339 113545960 -70742702 + L1MDa LINE L1 2430 3049 -3491 322 282 25 18 chr4 113546300 113546445 -70742217 - L1MD2 LINE L1 -14 6267 6082 435 19 0 0 chr4 113546454 113546506 -70742156 + (TG)n Simple_repeat Simple_repeat 1 52 0 462 281 56 34 chr4 113546506 113546684 -70741978 - L1MD2 LINE L1 -228 6525 6344 261 244 115 0 chr4 113546723 113546801 -70741861 - L1MD2 LINE L1 -292 6268 6182 1501 240 33 85 chr4 113546864 113547275 -70741387 - L1MD2 LINE L1 -2134 4406 4056 1253 241 59 70 chr4 113547275 113547747 -70740915 + MLT1C LTR MaLR 1 467 0 1501 240 33 85 chr4 113547747 113548103 -70740559 - L1MD2 LINE L1 -2484 4056 3683 1391 210 228 24 chr4 113548102 113548677 -70739985 - L1MD2 LINE L1 -4853 1687 996 * 228 270 135 0 chr4 113548777 113548866 -70739796 - L1MD2 LINE L1 -5933 607 507 1530 232 44 34 chr4 113548892 113549301 -70739361 - L1MD2 LINE L1 -6108 432 20 30 27 0 0 chr4 113549507 113549544 -70739118 + AT_rich Low_complexity Low_complexity 1 37 0 268 324 134 0 chr4 113550337 113550479 -70738183 - MIR SINE MIR -56 206 46 24 0 0 0 chr4 113551015 113551039 -70737623 + AT_rich Low_complexity Low_complexity 1 24 0 31 68 0 0 chr4 113551380 113551439 -70737223 + AT_rich Low_complexity Low_complexity 1 59 0 25 0 0 0 chr4 113551553 113551578 -70737084 + AT_rich Low_complexity Low_complexity 1 25 0 268 351 104 39 chr4 113551661 113551892 -70736770 - MIR SINE MIR 0 262 17 234 62 0 0 chr4 113553575 113553607 -70735055 + (TC)n Simple_repeat Simple_repeat 1 32 0 207 114 0 0 chr4 113553617 113553652 -70735010 + (GA)n Simple_repeat Simple_repeat 1 35 0 291 28 0 0 chr4 113553724 113553760 -70734902 + (TG)n Simple_repeat Simple_repeat 2 37 0 1391 257 51 5 chr4 113554768 113555177 -70733485 - L1ME3A LINE L1 -64 6106 5679 443 237 0 0 chr4 113555212 113555309 -70733353 - L1ME3A LINE L1 -265 5905 5809 191 35 0 35 chr4 113555632 113555661 -70733001 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 249 33 0 0 chr4 113556209 113556239 -70732423 + (CA)n Simple_repeat Simple_repeat 1 30 0 186 143 0 0 chr4 113556239 113556274 -70732388 + (GA)n Simple_repeat Simple_repeat 1 35 0 988 237 66 2 chr4 113556699 113557111 -70731551 - MER67D LTR ERV1 -4 510 1 216 0 0 0 chr4 113557188 113557212 -70731450 + (CCAA)n Simple_repeat Simple_repeat 2 25 0 26 0 0 0 chr4 113557342 113557368 -70731294 + AT_rich Low_complexity Low_complexity 1 26 0 368 277 85 0 chr4 113558774 113558904 -70729758 + MLT1J2 LTR MaLR 5 145 -305 404 342 63 40 chr4 113558989 113559211 -70729451 + MLT1J2 LTR MaLR 156 382 -68 215 235 44 0 chr4 113559560 113559628 -70729034 + (TA)n Simple_repeat Simple_repeat 2 72 0 31 26 0 0 chr4 113559985 113560023 -70728639 + AT_rich Low_complexity Low_complexity 1 38 0 2726 7 0 0 chr4 113560088 113560386 -70728276 + AluYa5 SINE Alu 14 311 0 9091 220 50 56 chr4 113560452 113562278 -70726384 + L1MA10 LINE L1 2179 3983 -2163 1921 175 18 3 chr4 113562278 113562621 -70726041 + MER7A DNA MER2_type 1 346 0 9091 220 50 56 chr4 113562621 113563858 -70724804 + L1MA10 LINE L1 3983 5225 -921 3991 168 54 9 chr4 113564051 113564841 -70723821 + L1MA10 LINE L1 5507 6332 -2 2648 66 0 3 chr4 113565286 113565634 -70723028 + L1PA5 LINE L1 5795 6141 -13 365 335 60 19 chr4 113566772 113567091 -70721571 + L1ME LINE L1 1029 1360 -5012 249 317 63 7 chr4 113567108 113567250 -70721412 + L1ME LINE L1 1262 1411 -4973 326 264 60 48 chr4 113567899 113567993 -70720669 + L1MC5 LINE L1 7628 7726 -235 1877 87 0 0 chr4 113567993 113568235 -70720427 - AluY SINE Alu -6 305 64 326 264 60 48 chr4 113568235 113568307 -70720355 + L1MC5 LINE L1 7726 7796 -165 504 0 0 0 chr4 113568320 113568376 -70720286 + (TTTTA)n Simple_repeat Simple_repeat 5 60 0 601 154 8 57 chr4 113568376 113568499 -70720163 - AluJb SINE Alu -195 117 1 251 345 0 0 chr4 113568500 113568616 -70720046 + L1ME3 LINE L1 6047 6162 0 516 282 87 30 chr4 113568628 113569484 -70719178 + L1ME LINE L1 4912 5827 -579 2024 120 0 3 chr4 113569484 113569776 -70718886 + AluSc SINE Alu 1 291 -18 516 282 87 30 chr4 113569776 113569836 -70718826 + L1ME LINE L1 5827 5882 -524 936 308 55 2 chr4 113569924 113570324 -70718338 - L1ME3A LINE L1 -112 6058 5638 928 304 126 51 chr4 113571043 113571679 -70716983 - L2 LINE L2 -569 2745 2028 375 23 0 0 chr4 113571679 113571723 -70716939 + (TAA)n Simple_repeat Simple_repeat 2 45 0 928 304 126 51 chr4 113571723 113571936 -70716726 - L2 LINE L2 -1286 2028 1832 240 261 63 0 chr4 113572010 113572121 -70716541 + L1MEd LINE L1 69 186 -5933 1538 201 3 23 chr4 113572446 113572754 -70715908 + AluJo SINE Alu 2 303 -9 521 266 60 70 chr4 113572911 113573314 -70715348 + L1M4 LINE L1 4447 4845 -1301 299 348 100 0 chr4 113573535 113573745 -70714917 - L2 LINE L2 -1483 1831 1601 396 154 0 21 chr4 113574296 113574395 -70714267 - FRAM/FAM SINE Alu -89 77 20 278 232 73 12 chr4 113574565 113574647 -70714015 + MLT1I LTR MaLR 319 405 -4 25 0 0 0 chr4 113574882 113574907 -70713755 + AT_rich Low_complexity Low_complexity 1 25 0 26 74 0 0 chr4 113576125 113576179 -70712483 + AT_rich Low_complexity Low_complexity 1 54 0 303 300 93 36 chr4 113576238 113576378 -70712284 + HAL1 LINE L1 3 150 -2357 503 267 112 43 chr4 113576797 113577172 -70711490 + HAL1 LINE L1 740 1140 -1367 511 311 106 28 chr4 113577802 113577974 -70710688 - L1M4 LINE L1 -2912 3234 3077 21 36 0 0 chr4 113577974 113578002 -70710660 + AT_rich Low_complexity Low_complexity 1 28 0 511 311 106 28 chr4 113578002 113578275 -70710387 - L1M4 LINE L1 -3069 3077 2725 402 57 0 0 chr4 113578457 113578510 -70710152 + (TA)n Simple_repeat Simple_repeat 1 53 0 2284 74 0 0 chr4 113578589 113578886 -70709776 + AluY SINE Alu 1 297 -14 21 82 0 0 chr4 113579121 113579170 -70709492 + AT_rich Low_complexity Low_complexity 1 49 0 25 51 0 0 chr4 113579847 113579886 -70708776 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr4 113579965 113579994 -70708668 + AT_rich Low_complexity Low_complexity 1 29 0 30 0 0 0 chr4 113580195 113580225 -70708437 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr4 113580402 113580427 -70708235 + AT_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr4 113580620 113580654 -70708008 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr4 113580691 113580714 -70707948 + AT_rich Low_complexity Low_complexity 1 23 0 43 47 0 0 chr4 113582097 113582161 -70706501 + AT_rich Low_complexity Low_complexity 1 64 0 364 168 45 45 chr4 113582180 113582359 -70706303 + (TA)n Simple_repeat Simple_repeat 2 180 0 54 40 0 0 chr4 113582364 113582439 -70706223 + AT_rich Low_complexity Low_complexity 1 75 0 270 0 0 0 chr4 113583035 113583065 -70705597 + (A)n Simple_repeat Simple_repeat 1 30 0 388 335 72 36 chr4 113583407 113583628 -70705034 + MIR SINE MIR 32 260 -2 253 379 14 21 chr4 113583784 113583929 -70704733 - MIR3 SINE MIR -44 164 21 601 350 56 18 chr4 113584108 113584499 -70704163 + ERVL LTR ERVL 2188 2593 -3171 249 303 138 21 chr4 113585401 113585546 -70703116 + LTR16C LTR ERVL 167 328 -163 240 273 0 0 chr4 113585576 113585631 -70703031 + CT-rich Low_complexity Low_complexity 2 56 0 26 0 0 0 chr4 113586077 113586103 -70702559 + AT_rich Low_complexity Low_complexity 1 26 0 27 0 0 0 chr4 113588037 113588064 -70700598 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr4 113588183 113588204 -70700458 + AT_rich Low_complexity Low_complexity 1 21 0 2003 183 35 10 chr4 113589314 113589675 -70698987 + MLT2D LTR ERVL 1 375 -39 491 0 17 0 chr4 113589675 113589734 -70698928 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 2003 183 35 10 chr4 113589734 113589776 -70698886 + MLT2D LTR ERVL 375 414 0 487 272 144 26 chr4 113589865 113590060 -70698602 - MIR SINE MIR -38 224 7 340 308 92 38 chr4 113591868 113592108 -70696554 + MIR SINE MIR 6 258 -4 294 259 59 0 chr4 113692177 113692262 -70596400 - MIR SINE MIR -106 156 67 1420 267 124 22 chr4 113692262 113692891 -70595771 + MER115 DNA AcHobo 1 693 0 303 263 42 0 chr4 113693172 113693254 -70595408 + MIR SINE MIR 49 137 -71 322 303 90 26 chr4 113696227 113696461 -70592201 - MIR SINE MIR -2 260 12 228 67 0 0 chr4 113697148 113697178 -70591484 + (CA)n Simple_repeat Simple_repeat 1 30 0 2131 118 64 14 chr4 113697559 113697916 -70590746 + THE1C LTR MaLR 1 375 0 301 257 59 26 chr4 113697992 113698144 -70590518 + L1M4 LINE L1 4490 4646 -1500 1433 160 0 8 chr4 113698144 113698388 -70590274 - AluJo SINE Alu -16 296 55 182 265 0 0 chr4 113699131 113699180 -70589482 + L2 LINE L2 3265 3313 0 213 175 0 0 chr4 113699180 113699220 -70589442 + (CGAA)n Simple_repeat Simple_repeat 2 41 0 192 77 0 0 chr4 113699279 113699305 -70589357 + (TTTTC)n Simple_repeat Simple_repeat 2 27 0 195 129 0 0 chr4 113699680 113699711 -70588951 + (T)n Simple_repeat Simple_repeat 1 31 0 1353 175 51 16 chr4 113700351 113700608 -70588054 - AluJo SINE Alu -36 276 11 988 187 79 46 chr4 113700917 113701192 -70587470 + L1MC3 LINE L1 6127 6332 -12 2233 102 7 7 chr4 113701193 113701497 -70587165 + AluSg SINE Alu 1 304 -6 22 35 0 0 chr4 113701501 113701530 -70587132 + AT_rich Low_complexity Low_complexity 1 29 0 393 22 0 0 chr4 113701828 113701874 -70586788 + (CA)n Simple_repeat Simple_repeat 2 47 0 1418 309 164 30 chr4 113702583 113702967 -70585695 + L2 LINE L2 1612 1943 -1371 2054 125 0 7 chr4 113702967 113703272 -70585390 - AluSx SINE Alu -9 303 1 1418 309 164 30 chr4 113703272 113703715 -70584947 + L2 LINE L2 1943 2550 -764 186 43 0 0 chr4 113704403 113704426 -70584236 + (TAG)n Simple_repeat Simple_repeat 1 23 0 21 36 0 0 chr4 113705970 113705998 -70582664 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr4 113706086 113706119 -70582543 + AT_rich Low_complexity Low_complexity 1 33 0 315 0 0 0 chr4 113706546 113706581 -70582081 + (TG)n Simple_repeat Simple_repeat 2 36 0 250 295 125 9 chr4 113707300 113707412 -70581250 + MIR SINE MIR 76 200 -62 326 354 6 25 chr4 113708120 113708281 -70580381 + L2 LINE L2 2432 2589 -725 526 274 99 92 chr4 113708589 113709001 -70579661 + LTR68 LTR ERV1 6 420 -320 198 0 0 0 chr4 113709214 113709236 -70579426 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2435 181 11 32 chr4 113709471 113710007 -70578655 + L1MA5 LINE L1 5775 6299 -1 24 0 0 0 chr4 113710112 113710136 -70578526 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr4 113710898 113710926 -70577736 + AT_rich Low_complexity Low_complexity 1 28 0 2376 70 0 7 chr4 113711566 113711865 -70576797 - AluY SINE Alu -14 297 1 260 279 118 37 chr4 113712778 113712914 -70575748 - L2 LINE L2 0 3313 3167 504 320 62 67 chr4 113713455 113714064 -70574598 - L2 LINE L2 -951 2363 1758 8026 176 27 16 chr4 113714570 113716146 -70572516 + L1PA13 LINE L1 3688 5281 -865 3270 115 8 2 chr4 113716149 113716655 -70572007 + L1PA13 LINE L1 5655 6163 0 1911 117 0 11 chr4 113716913 113717187 -70571475 - AluSq SINE Alu -6 307 37 806 231 164 35 chr4 113717291 113717577 -70571085 + MER58B DNA MER1_type 1 323 -18 738 302 95 7 chr4 113717909 113718320 -70570342 - L1ME2 LINE L1 -9 6155 5709 544 258 31 83 chr4 113718343 113718658 -70570004 + L1M4 LINE L1 4807 5137 -1009 1906 105 77 7 chr4 113718658 113718944 -70569718 + AluSx SINE Alu 7 312 0 544 258 31 83 chr4 113718944 113718979 -70569683 + L1M4 LINE L1 5137 5135 -1011 2215 90 3 0 chr4 113718979 113719269 -70569393 + AluY SINE Alu 1 291 -20 544 258 31 83 chr4 113719269 113719340 -70569322 + L1M4 LINE L1 5134 5207 -939 450 127 0 0 chr4 113719778 113719849 -70568813 + (TA)n Simple_repeat Simple_repeat 1 71 0 237 301 65 88 chr4 113720148 113720444 -70568218 + L2 LINE L2 2872 3271 -1 23 0 0 0 chr4 113721527 113721550 -70567112 + AT_rich Low_complexity Low_complexity 1 23 0 779 282 62 37 chr4 113722846 113723247 -70565415 - MER92A LTR ERV1 0 412 2 458 125 12 0 chr4 113723284 113723364 -70565298 + (GGGA)n Simple_repeat Simple_repeat 4 84 0 2126 111 0 13 chr4 113723440 113723755 -70564907 + AluY SINE Alu 1 311 0 2251 88 3 3 chr4 113723755 113724060 -70564602 + AluSc SINE Alu 1 305 -4 1067 169 0 0 chr4 113724150 113724316 -70564346 + AluJb SINE Alu 1 166 -146 1069 292 114 23 chr4 113726011 113726535 -70562127 - MER97a DNA MER1_type? -322 572 1 339 25 0 0 chr4 113727059 113727099 -70561563 + (TG)n Simple_repeat Simple_repeat 2 41 0 372 255 11 0 chr4 113728329 113728423 -70560239 + L1PA16 LINE L1 6072 6166 0 2259 67 7 3 chr4 113729790 113730112 -70558550 + AluY SINE Alu 1 323 0 240 301 14 0 chr4 113730924 113730997 -70557665 + MIR SINE MIR 162 235 -27 983 348 65 30 chr4 113731205 113731848 -70556814 + L2 LINE L2 2035 2700 -614 5059 92 6 6 chr4 113731876 113732583 -70556079 - L1PA7 LINE L1 0 6154 5448 14459 91 13 6 chr4 113732583 113734821 -70553841 - L1P3 LINE L1 -607 5547 3300 313 296 106 23 chr4 113735250 113735382 -70553280 + L2 LINE L2 3171 3313 0 * 336 374 6 24 chr4 113735372 113735538 -70553124 - MIR SINE MIR -61 201 39 221 238 38 0 chr4 113736815 113736895 -70551767 + (TA)n Simple_repeat Simple_repeat 1 83 0 1397 201 51 56 chr4 113737007 113737399 -70551263 - MLT1B LTR MaLR 0 390 1 330 232 53 0 chr4 113738566 113738661 -70550001 - MER94 DNA DNA -34 100 1 365 361 27 46 chr4 113739021 113739284 -70549378 + MER68 LTR ERV1 305 562 0 194 329 58 44 chr4 113739504 113739641 -70549021 + L2 LINE L2 2205 2343 -971 205 206 16 16 chr4 113740724 113740787 -70547875 + (CA)n Simple_repeat Simple_repeat 2 64 0 2890 170 17 6 chr4 113741094 113741629 -70547033 + L1MC1 LINE L1 5793 6333 0 961 122 0 0 chr4 113741877 113742008 -70546654 + AluY SINE Alu 2 132 -179 892 163 13 7 chr4 113742689 113742842 -70545820 + FRAM SINE Alu 1 153 -23 21 71 0 0 chr4 113742842 113742884 -70545778 + AT_rich Low_complexity Low_complexity 1 42 0 30 0 0 0 chr4 113743408 113743438 -70545224 + AT_rich Low_complexity Low_complexity 1 30 0 31 26 0 0 chr4 113744082 113744120 -70544542 + AT_rich Low_complexity Low_complexity 1 38 0 25 31 0 0 chr4 113744552 113744584 -70544078 + AT_rich Low_complexity Low_complexity 1 32 0 33 56 0 0 chr4 113745319 113745373 -70543289 + AT_rich Low_complexity Low_complexity 1 54 0 22 0 0 0 chr4 113746362 113746384 -70542278 + AT_rich Low_complexity Low_complexity 1 22 0 1442 163 115 81 chr4 113747131 113747334 -70541328 - MSTB1 LTR MaLR 0 432 237 231 36 0 0 chr4 113747334 113747362 -70541300 + (GA)n Simple_repeat Simple_repeat 1 28 0 1442 163 115 81 chr4 113747362 113747522 -70541140 - MSTB1 LTR MaLR -195 237 51 1496 115 5 9 chr4 113747522 113747740 -70540922 - AluSp SINE Alu -12 301 85 1442 163 115 81 chr4 113747740 113747793 -70540869 - MSTB1 LTR MaLR -381 51 1 386 324 113 9 chr4 113748529 113748742 -70539920 - MIR SINE MIR -14 248 14 226 205 0 0 chr4 113748742 113748781 -70539881 + (CA)n Simple_repeat Simple_repeat 2 40 0 401 302 0 0 chr4 113749297 113749403 -70539259 - L2 LINE L2 0 3313 3208 234 339 137 13 chr4 113749518 113749745 -70538917 + L2 LINE L2 2503 2757 -557 252 233 27 27 chr4 113750418 113750491 -70538171 + CT-rich Low_complexity Low_complexity 1 73 0 564 288 124 17 chr4 113750934 113751167 -70537495 + MIR SINE MIR 4 261 -1 270 204 0 0 chr4 113751227 113751281 -70537381 - L1MC4 LINE L1 -1339 6703 6650 205 161 0 0 chr4 113751646 113751677 -70536985 + polypyrimidine Low_complexity Low_complexity 1 31 0 315 0 0 0 chr4 113751685 113751720 -70536942 + (TG)n Simple_repeat Simple_repeat 2 36 0 276 139 0 0 chr4 113751921 113751964 -70536698 + L1MEc LINE L1 2240 2282 -4114 25 83 0 0 chr4 113752231 113752291 -70536371 + AT_rich Low_complexity Low_complexity 1 60 0 523 314 25 42 chr4 113752885 113753221 -70535441 + MLT1G1 LTR MaLR 3 284 -306 333 251 26 58 chr4 113753277 113753454 -70535208 + MLT1G1 LTR MaLR 395 590 0 1682 253 41 14 chr4 113753730 113754354 -70534308 - L1MB8 LINE L1 -1 6988 6275 207 225 0 0 chr4 113754476 113754516 -70534146 + A-rich Low_complexity Low_complexity 1 40 0 235 210 48 16 chr4 113754539 113754601 -70534061 - L1MB8 LINE L1 -1593 5364 5301 648 267 27 90 chr4 113754623 113754923 -70533739 - L1MB8 LINE L1 -5648 1211 931 23 68 0 0 chr4 113755710 113755754 -70532908 + AT_rich Low_complexity Low_complexity 1 44 0 255 355 33 33 chr4 113755839 113756022 -70532640 + L2 LINE L2 2652 2834 -480 409 271 82 0 chr4 113756148 113756270 -70532392 + MIR SINE MIR 131 262 0 373 334 70 40 chr4 113756279 113756578 -70532084 + L2 LINE L2 2919 3226 -87 1570 309 104 27 chr4 113756756 113757571 -70531091 + L2 LINE L2 1854 2731 -583 719 345 26 4 chr4 113758605 113758950 -70529712 + L2 LINE L2 2771 3119 -194 8919 160 111 17 chr4 113759837 113762617 -70526045 - L1PBa LINE L1 -2976 3886 625 362 200 12 12 chr4 113762605 113762690 -70525972 - L1PBa LINE L1 -6659 204 120 * 2803 10 0 0 chr4 113763601 113763910 -70524752 + AluYa5 SINE Alu 1 309 -2 562 83 24 0 chr4 113764160 113764244 -70524418 - L1PBa LINE L1 -5178 1685 1600 262 336 31 49 chr4 113764757 113764983 -70523679 - L1MC4 LINE L1 -1050 6992 6771 252 114 0 0 chr4 113765496 113765531 -70523131 - U2 snRNA snRNA -153 35 1 313 245 13 119 chr4 113767336 113767406 -70521256 - MLT1J LTR MaLR -40 471 426 2400 67 0 16 chr4 113767406 113767720 -70520942 + AluY SINE Alu 3 311 0 313 245 13 119 chr4 113767720 113767808 -70520854 - MLT1J LTR MaLR -85 426 330 1882 189 39 35 chr4 113767831 113768380 -70520282 + MLT2A2 LTR ERVL 1 554 0 30 77 0 0 chr4 113768987 113769052 -70519610 + AT_rich Low_complexity Low_complexity 1 65 0 400 282 110 31 chr4 113770628 113770947 -70517715 - L1MC4 LINE L1 -1897 5911 5568 497 283 119 63 chr4 113770971 113771416 -70517246 - L1MC4 LINE L1 -791 5355 4886 222 37 0 0 chr4 113771897 113771924 -70516738 + (TG)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr4 113772771 113772792 -70515870 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr4 113773198 113773241 -70515421 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr4 113773942 113773967 -70514695 + AT_rich Low_complexity Low_complexity 1 25 0 462 108 0 0 chr4 113775236 113775310 -70513352 + (TC)n Simple_repeat Simple_repeat 2 75 0 26 93 0 0 chr4 113775366 113775441 -70513221 + AT_rich Low_complexity Low_complexity 1 75 0 1803 122 8 0 chr4 113775478 113775767 -70512895 - AluSp SINE Alu 0 319 29 24 53 0 0 chr4 113775984 113776022 -70512640 + AT_rich Low_complexity Low_complexity 1 38 0 222 191 0 0 chr4 113776372 113776419 -70512243 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 297 0 0 0 chr4 113776505 113776538 -70512124 + (TG)n Simple_repeat Simple_repeat 2 34 0 297 336 182 7 chr4 113776679 113776822 -70511840 - MER5A DNA MER1_type -6 183 16 2053 126 3 19 chr4 113776951 113777268 -70511394 - AluSx SINE Alu 0 312 1 21 0 0 0 chr4 113777348 113777369 -70511293 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 113778842 113778865 -70509797 + AT_rich Low_complexity Low_complexity 1 23 0 271 261 126 9 chr4 113779347 113779458 -70509204 - L1ME2 LINE L1 -34 6130 6007 * 3848 210 42 17 chr4 113779457 113780335 -70508327 - L1MC3 LINE L1 -304 7481 6582 1051 236 19 62 chr4 113780335 113780657 -70508005 - MLT1C LTR MaLR 0 467 160 15305 85 7 2 chr4 113780658 113783899 -70504763 - L1P LINE L1 -1609 4537 1275 3394 74 5 0 chr4 113783899 113784345 -70504317 + L1PA6 LINE L1 5704 6151 -3 739 198 12 24 chr4 113784347 113784514 -70504148 - MLT1C LTR MaLR -302 165 1 849 216 22 0 chr4 113784514 113784695 -70503967 - L1MC3 LINE L1 -1199 6586 6402 545 201 42 70 chr4 113784692 113784906 -70503756 - L1M4 LINE L1 -850 5296 5089 * 275 292 56 59 chr4 113784961 113785352 -70503310 - L1MEc LINE L1 -4130 2433 2044 22 35 0 0 chr4 113785633 113785662 -70503000 + AT_rich Low_complexity Low_complexity 1 29 0 237 108 0 0 chr4 113785792 113785829 -70502833 + (T)n Simple_repeat Simple_repeat 1 37 0 1187 301 68 28 chr4 113785849 113786521 -70502141 - L1MEc LINE L1 -4640 1744 1046 3444 263 39 29 chr4 113786528 113787955 -70500707 - L1M1 LINE L1 -5417 2148 27 265 385 47 20 chr4 113788692 113788840 -70499822 - MER5A DNA MER1_type 0 189 38 22 0 0 0 chr4 113790429 113790451 -70498211 + AT_rich Low_complexity Low_complexity 1 22 0 43 56 0 0 chr4 113793099 113793170 -70495492 + AT_rich Low_complexity Low_complexity 1 71 0 312 335 60 37 chr4 113793925 113794140 -70494522 - L2 LINE L2 -469 2845 2626 1391 274 40 9 chr4 113794221 113794666 -70493996 - MLT1C LTR MaLR -8 459 1 455 245 69 88 chr4 113795463 113795769 -70492893 - MER20B DNA MER1_type -292 491 192 766 311 81 24 chr4 113795821 113796239 -70492423 + L1MEc LINE L1 36 477 -5919 457 133 12 0 chr4 113796976 113797059 -70491603 + L1MA4 LINE L1 6211 6294 -6 933 299 158 17 chr4 113797094 113797938 -70490724 + L1M4 LINE L1 3704 4666 -1480 4105 124 91 41 chr4 113797938 113799277 -70489385 - pTR5 LTR ERV1 0 2606 1524 468 297 110 30 chr4 113799278 113799541 -70489121 + L1M4 LINE L1 4664 4947 -1199 1339 162 144 78 chr4 113800682 113801120 -70487542 + MLT1C LTR MaLR 1 467 0 733 197 46 0 chr4 113801377 113801529 -70487133 - MER105 DNA DNA -45 159 1 22 0 0 0 chr4 113803205 113803227 -70485435 + AT_rich Low_complexity Low_complexity 1 22 0 207 186 0 0 chr4 113803704 113803747 -70484915 + T-rich Low_complexity Low_complexity 3 45 0 284 354 26 9 chr4 113803792 113803905 -70484757 + MIR SINE MIR 23 137 -125 291 302 88 47 chr4 113804928 113805120 -70483542 - LTR41 LTR ERVL -573 200 1 1509 230 9 33 chr4 113805423 113805803 -70482859 + MLT1A2 LTR MaLR 1 396 0 292 237 26 9 chr4 113806450 113806564 -70482098 + GA-rich Low_complexity Low_complexity 5 120 0 1227 226 134 3 chr4 113806962 113807312 -70481350 + MSTD LTR MaLR 1 396 0 26 0 0 0 chr4 113808167 113808193 -70480469 + AT_rich Low_complexity Low_complexity 1 26 0 4463 166 38 9 chr4 113808350 113809204 -70479458 - L1PB4 LINE L1 -3 6153 5276 21 36 0 0 chr4 113809215 113809243 -70479419 + AT_rich Low_complexity Low_complexity 1 28 0 2084 123 3 0 chr4 113809446 113809747 -70478915 + AluSg SINE Alu 3 304 -6 476 272 1 9 chr4 113809884 113810024 -70478638 - L1ME3 LINE L1 -8 6154 6016 3293 179 114 25 chr4 113810072 113810870 -70477792 - L1MC1 LINE L1 -13 6320 5452 26 0 0 0 chr4 113810944 113810970 -70477692 + AT_rich Low_complexity Low_complexity 1 26 0 24 67 0 0 chr4 113811402 113811447 -70477215 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr4 113811536 113811557 -70477105 + AT_rich Low_complexity Low_complexity 1 21 0 8605 184 84 57 chr4 113811571 113812257 -70476405 - L1MCa LINE L1 -4064 2362 1696 245 29 29 0 chr4 113812257 113812291 -70476371 + (TG)n Simple_repeat Simple_repeat 2 36 0 8605 184 84 57 chr4 113812291 113813887 -70474775 - L1MCa LINE L1 -4730 1696 19 231 285 92 52 chr4 113814517 113814885 -70473777 + HAL1 LINE L1 2106 2488 -19 325 181 149 11 chr4 113814958 113815052 -70473610 + L1MC2 LINE L1 187 293 -6271 2434 217 54 28 chr4 113815067 113816227 -70472435 + L1MC2 LINE L1 474 1605 -4858 1804 168 43 0 chr4 113816252 113816579 -70472083 - MER7A DNA MER2_type -1 345 7 276 245 48 101 chr4 113816609 113816701 -70471961 + L1MC2 LINE L1 2569 2647 -3917 2060 142 3 0 chr4 113816701 113817012 -70471650 + AluSx SINE Alu 1 312 0 276 245 48 101 chr4 113817012 113817107 -70471555 + L1MC2 LINE L1 2647 2746 -3818 4215 206 53 43 chr4 113817107 113817962 -70470700 + L1MC2 LINE L1 5011 5856 -906 1970 113 20 17 chr4 113817962 113818255 -70470407 - AluSc SINE Alu -15 294 1 4215 206 53 43 chr4 113818255 113818861 -70469801 + L1MC2 LINE L1 5856 6496 -266 1962 119 6 35 chr4 113818861 113819179 -70469483 + AluSx SINE Alu 1 309 -3 4215 206 53 43 chr4 113819179 113819447 -70469215 + L1MC2 LINE L1 6496 6760 -2 399 127 0 0 chr4 113820117 113820180 -70468482 + (TA)n Simple_repeat Simple_repeat 2 64 0 208 284 30 15 chr4 113820546 113820613 -70468049 - MER5A DNA MER1_type -118 71 4 21 36 0 0 chr4 113820688 113820716 -70467946 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr4 113822953 113822984 -70465678 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr4 113823575 113823604 -70465058 + AT_rich Low_complexity Low_complexity 1 29 0 310 376 68 61 chr4 113824075 113824500 -70464162 - L2 LINE L2 -15 3257 2830 2101 106 33 0 chr4 113824506 113824807 -70463855 + AluSp SINE Alu 3 313 0 208 220 20 0 chr4 113824934 113824984 -70463678 - L2 LINE L2 -2 3311 3261 1481 106 15 0 chr4 113825141 113825340 -70463322 + AluSx SINE Alu 1 202 -110 21 36 0 0 chr4 113825362 113825390 -70463272 + AT_rich Low_complexity Low_complexity 1 28 0 195 42 0 0 chr4 113825546 113825570 -70463092 + (TG)n Simple_repeat Simple_repeat 1 24 0 291 296 46 5 chr4 113825955 113826151 -70462511 - L1MEc LINE L1 -4182 2214 2011 2081 128 10 0 chr4 113827254 113827552 -70461110 - AluSx SINE Alu -11 301 1 208 220 20 0 chr4 113827720 113827770 -70460892 + L2 LINE L2 3261 3311 -2 184 356 10 0 chr4 113828044 113828148 -70460514 + MIR SINE MIR 137 241 -21 477 301 85 46 chr4 113828178 113828639 -70460023 - L1M4 LINE L1 -3319 2827 2349 452 308 7 14 chr4 113828969 113829115 -70459547 - LTR33 LTR ERVL -376 145 1 258 313 97 50 chr4 113829606 113829906 -70458756 - ERVL LTR ERVL -1678 4086 3773 264 289 40 0 chr4 113830180 113830256 -70458406 - L1ME2 LINE L1 -13 6151 6073 289 403 44 16 chr4 113830350 113830598 -70458064 - ERVL LTR ERVL -2034 3620 3366 562 287 137 16 chr4 113830861 113831168 -70457494 - ERVL LTR ERVL -3087 2677 2334 24 67 0 0 chr4 113831379 113831424 -70457238 + AT_rich Low_complexity Low_complexity 1 45 0 255 315 65 20 chr4 113831765 113831965 -70456697 + L1M4 LINE L1 4662 4870 -1276 26 30 0 0 chr4 113832144 113832177 -70456485 + AT_rich Low_complexity Low_complexity 1 33 0 41 89 0 19 chr4 113832340 113832498 -70456164 + AT_rich Low_complexity Low_complexity 1 155 0 779 171 26 0 chr4 113833276 113833428 -70455234 - L1MA4 LINE L1 -7 6293 6138 30 45 0 0 chr4 113834132 113834176 -70454486 + AT_rich Low_complexity Low_complexity 1 44 0 605 299 33 43 chr4 113834494 113834798 -70453864 - L2 LINE L2 -2 3311 3011 1676 265 56 37 chr4 113835165 113835700 -70452962 - MLT1E LTR MaLR 0 593 49 24 32 0 0 chr4 113836588 113836619 -70452043 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 113836707 113836728 -70451934 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 113837454 113837477 -70451185 + AT_rich Low_complexity Low_complexity 1 23 0 329 278 102 46 chr4 113838359 113838575 -70450087 + L1M4 LINE L1 3449 3676 -2470 250 273 49 49 chr4 113838763 113838906 -70449756 + L1P LINE L1 4026 4168 -1978 2221 164 0 19 chr4 113839010 113839437 -70449225 + L1PA16 LINE L1 5748 6166 0 581 323 60 22 chr4 113839608 113839877 -70448785 - L2 LINE L2 -2512 802 524 5463 40 0 6 chr4 113839902 113840572 -70448090 + L1PA4 LINE L1 5324 5989 -166 398 146 39 1 chr4 113840574 113840659 -70448003 + AluSg/x SINE Alu 211 269 -33 1286 70 5 27 chr4 113840759 113840945 -70447717 + L1PA4 LINE L1 5939 6120 -35 471 113 0 12 chr4 113840956 113841036 -70447626 + L1PA5 LINE L1 6076 6154 0 587 365 108 31 chr4 113841040 113841492 -70447170 - L2 LINE L2 -2822 492 6 2150 72 14 3 chr4 113841682 113841973 -70446689 - L1PA7 LINE L1 0 6154 5861 818 321 62 12 chr4 113842471 113842894 -70445768 - ERVL LTR ERVL -3174 2590 2147 822 266 102 21 chr4 113843739 113844360 -70444302 - L1MC/D LINE L1 -743 5472 5055 2062 169 53 13 chr4 113844488 113844884 -70443778 - Tigger2 DNA MER2_type 0 2718 2307 455 288 21 11 chr4 113844908 113845099 -70443563 - L1MC/D LINE L1 -3705 2510 2318 725 357 8 8 chr4 113845111 113845475 -70443187 - L1MC/D LINE L1 -5977 419 56 411 210 74 56 chr4 113845477 113845639 -70443023 - LTR45B LTR ERV1 -1 488 324 2069 151 52 0 chr4 113846356 113846700 -70441962 + THE1B LTR MaLR 1 362 -2 9586 122 33 37 chr4 113846702 113848287 -70440375 + THE1B-int LTR MaLR 1 1580 0 1810 137 118 12 chr4 113848293 113848615 -70440047 + THE1B LTR MaLR 9 364 0 577 313 102 35 chr4 113848653 113849245 -70439417 - L1ME LINE L1 -4436 1987 1288 389 244 63 65 chr4 113849250 113849834 -70438828 - L1ME LINE L1 -4994 1378 764 330 290 6 68 chr4 113850002 113850178 -70438484 - L1ME LINE L1 -5850 522 358 4366 147 25 1 chr4 113852075 113852762 -70435900 + MER50 LTR ERV1 9 711 -23 232 159 32 95 chr4 113853249 113853312 -70435350 - MLT1I LTR MaLR -244 165 107 267 103 0 0 chr4 113853398 113853437 -70435225 + (TG)n Simple_repeat Simple_repeat 2 40 0 627 225 266 67 chr4 113854876 113855294 -70433368 + Charlie1a DNA MER1_type 5 505 -950 4529 178 69 24 chr4 113855294 113856249 -70432413 + L1MCa LINE L1 20 1017 -5409 288 0 0 0 chr4 113856750 113856782 -70431880 + (A)n Simple_repeat Simple_repeat 1 32 0 222 62 0 0 chr4 113857417 113857449 -70431213 + (A)n Simple_repeat Simple_repeat 1 32 0 1597 197 21 6 chr4 113858511 113858979 -70429683 + L1MC/D LINE L1 5080 5554 -743 261 0 0 0 chr4 113858979 113859008 -70429654 + (A)n Simple_repeat Simple_repeat 1 29 0 230 321 29 0 chr4 113859624 113859761 -70428901 + L1M LINE L1 5257 5397 -936 288 0 0 0 chr4 113859916 113859948 -70428714 + (A)n Simple_repeat Simple_repeat 1 32 0 450 160 43 32 chr4 113860025 113860119 -70428543 + AluJ/FLAM SINE Alu 1 95 -217 415 224 98 19 chr4 113860550 113860664 -70427998 + MLT2D LTR ERVL 267 378 -36 180 77 0 0 chr4 113860664 113860690 -70427972 + (CA)n Simple_repeat Simple_repeat 1 26 0 415 224 98 19 chr4 113860690 113860731 -70427931 + MLT2D LTR ERVL 378 414 0 1916 171 41 58 chr4 113861269 113861422 -70427240 + MLT2A2 LTR ERVL 1 155 -399 2178 100 7 3 chr4 113861422 113861723 -70426939 - AluSg SINE Alu -8 302 1 1916 171 41 58 chr4 113861723 113862124 -70426538 + MLT2A2 LTR ERVL 155 554 0 223 49 49 0 chr4 113862143 113862184 -70426478 + (TA)n Simple_repeat Simple_repeat 1 43 0 26 93 0 0 chr4 113862305 113862380 -70426282 + AT_rich Low_complexity Low_complexity 1 75 0 909 137 40 11 chr4 113863854 113864029 -70424633 - L1MA2 LINE L1 0 6304 6125 21 57 0 0 chr4 113865123 113865158 -70423504 + AT_rich Low_complexity Low_complexity 1 35 0 25 51 0 0 chr4 113865616 113865655 -70423007 + AT_rich Low_complexity Low_complexity 1 39 0 26 0 0 0 chr4 113867333 113867359 -70421303 + AT_rich Low_complexity Low_complexity 1 26 0 22 56 0 0 chr4 113867557 113867593 -70421069 + AT_rich Low_complexity Low_complexity 1 36 0 23 78 0 0 chr4 113868078 113868129 -70420533 + AT_rich Low_complexity Low_complexity 1 51 0 486 311 61 0 chr4 113868382 113868530 -70420132 + LTR16A LTR ERVL 221 377 -73 392 302 103 0 chr4 113868574 113868700 -70419962 + HERV16 LTR ERVL 479 617 -4379 9059 27 0 1 chr4 113868724 113870575 -70418087 - L1PA4 LINE L1 0 6155 4305 1237 39 0 0 chr4 113870575 113870728 -70417934 + L1P LINE L1 4196 4348 -1798 392 339 81 42 chr4 113870964 113871345 -70417317 - L1M4 LINE L1 -3558 2588 2193 2199 211 20 2 chr4 113871479 113871935 -70416727 + MLT1C LTR MaLR 4 467 0 1598 167 67 11 chr4 113871961 113872467 -70416195 - L1M2 LINE L1 -743 5403 5002 3371 179 30 4 chr4 113872467 113873170 -70415492 + L1MA4 LINE L1 5561 6288 -12 32 26 0 0 chr4 113874366 113874405 -70414257 + AT_rich Low_complexity Low_complexity 1 39 0 317 266 28 11 chr4 113874416 113874593 -70414069 + (TA)n Simple_repeat Simple_repeat 1 180 0 539 231 17 0 chr4 113874596 113874713 -70413949 - FLAM_A SINE Alu -13 120 2 180 0 0 0 chr4 113875822 113875842 -70412820 + (A)n Simple_repeat Simple_repeat 1 20 0 344 289 10 0 chr4 113876363 113876467 -70412195 - LTR43 LTR ERV1 -306 296 192 336 339 108 14 chr4 113877260 113877546 -70411116 - L2 LINE L2 -2792 522 210 28 0 0 0 chr4 113877563 113877591 -70411071 + AT_rich Low_complexity Low_complexity 1 28 0 368 324 0 0 chr4 113878044 113878146 -70410516 - MER5A DNA MER1_type -78 111 10 265 237 0 17 chr4 113878881 113878940 -70409722 - MER5B DNA MER1_type 0 178 121 473 113 12 12 chr4 113880217 113880297 -70408365 + MADE1 DNA Mariner 1 80 0 4586 231 56 23 chr4 113881018 113883317 -70405345 - L1MB3 LINE L1 -13 6406 4027 343 143 3 0 chr4 113883317 113883377 -70405285 - MLT2B3 LTR ERVL 0 520 472 419 69 110 0 chr4 113883451 113883596 -70405066 + (TA)n Simple_repeat Simple_repeat 1 161 0 1678 246 33 56 chr4 113883600 113884134 -70404528 - MLT2B3 LTR ERVL -40 500 1 3646 243 38 61 chr4 113884137 113886137 -70402525 - L1MB3 LINE L1 -2354 4028 2057 * 4717 231 30 12 chr4 113886132 113887250 -70401412 - L1MB3 LINE L1 -5227 1157 20 22 70 0 0 chr4 113887267 113887310 -70401352 + AT_rich Low_complexity Low_complexity 1 43 0 207 100 0 0 chr4 113889123 113889153 -70399509 + (TG)n Simple_repeat Simple_repeat 1 30 0 28 48 0 0 chr4 113889201 113889243 -70399419 + AT_rich Low_complexity Low_complexity 1 42 0 2807 125 2 2 chr4 113889948 113890379 -70398283 - L1PB1 LINE L1 -2 6149 5719 30 59 0 0 chr4 113890543 113890594 -70398068 + AT_rich Low_complexity Low_complexity 1 51 0 21 82 0 0 chr4 113890722 113890771 -70397891 + AT_rich Low_complexity Low_complexity 1 49 0 1003 240 90 23 chr4 113891158 113891520 -70397142 - MER57A LTR ERV1 -2 401 41 1858 161 11 33 chr4 113892197 113892558 -70396104 - MER47A DNA MER2_type 0 366 14 414 350 113 44 chr4 113893881 113894678 -70393984 + L2 LINE L2 1500 2351 -963 1015 303 141 27 chr4 113895186 113895919 -70392743 - L1ME3A LINE L1 -11 6553 5738 351 239 219 13 chr4 113895911 113896217 -70392445 - L1ME3A LINE L1 -2134 4406 4038 * 326 237 53 116 chr4 113896237 113896346 -70392316 - L1ME3A LINE L1 -5069 1471 1380 2272 93 7 0 chr4 113896346 113896637 -70392025 - AluY SINE Alu -16 295 3 326 237 53 116 chr4 113896637 113896734 -70391928 - L1ME3A LINE L1 -5160 1380 1278 396 0 0 0 chr4 113897685 113897729 -70390933 + (GA)n Simple_repeat Simple_repeat 2 45 0 369 0 0 0 chr4 113897728 113897769 -70390893 + (TG)n Simple_repeat Simple_repeat 1 41 0 * 23 33 0 0 chr4 113898077 113898107 -70390555 + AT_rich Low_complexity Low_complexity 1 30 0 31 26 0 0 chr4 113898233 113898271 -70390391 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr4 113898407 113898431 -70390231 + AT_rich Low_complexity Low_complexity 1 24 0 315 0 0 0 chr4 113898511 113898546 -70390116 + (TG)n Simple_repeat Simple_repeat 2 36 0 374 320 77 63 chr4 113898845 113899289 -70389373 - L1MEd LINE L1 -5058 1061 612 409 277 17 8 chr4 113899772 113899891 -70388771 + MLT1J2 LTR MaLR 92 211 -239 334 399 18 33 chr4 113900217 113900613 -70388049 + MLT1I LTR MaLR 1 390 -19 33 56 0 0 chr4 113901892 113901946 -70386716 + AT_rich Low_complexity Low_complexity 1 54 0 1829 243 74 14 chr4 113902775 113903277 -70385385 + L1M1 LINE L1 15 546 -7019 * 6485 146 15 4 chr4 113903259 113904971 -70383691 + L1MA1 LINE L1 4540 6270 -32 258 32 0 0 chr4 113904971 113905002 -70383660 + (CA)n Simple_repeat Simple_repeat 1 31 0 6485 146 15 4 chr4 113905002 113905036 -70383626 + L1MA1 LINE L1 6270 6302 0 21 82 0 0 chr4 113905136 113905185 -70383477 + AT_rich Low_complexity Low_complexity 1 49 0 42326 57 2 1 chr4 113906265 113912416 -70376246 + L1PA5 LINE L1 3 6154 0 387 63 16 0 chr4 113912606 113912669 -70375993 - L1MA3 LINE L1 0 7724 7661 757 100 0 0 chr4 113912722 113912854 -70375808 + AluSp/q SINE Alu 186 317 0 5729 175 14 16 chr4 113912862 113913255 -70375407 - L1MA3 LINE L1 -54 7670 7278 1870 79 0 16 chr4 113913255 113913509 -70375153 + AluY SINE Alu 60 309 -2 5729 175 14 16 chr4 113913509 113915302 -70373360 - L1MA3 LINE L1 -446 7278 5486 5217 189 34 17 chr4 113915277 113917344 -70371318 - L1MA3 LINE L1 -2840 4725 2623 * 1896 189 3 3 chr4 113917413 113917756 -70370906 - MER47A DNA MER2_type -23 343 1 21 0 0 0 chr4 113917850 113917871 -70370791 + AT_rich Low_complexity Low_complexity 1 21 0 1333 214 71 6 chr4 113918823 113919145 -70369517 + MER2 DNA MER2_type 2 344 0 3848 138 3 6 chr4 113919341 113919706 -70368956 - L1PB4 LINE L1 -1 6155 5791 372 22 0 0 chr4 113919706 113919751 -70368911 + (TG)n Simple_repeat Simple_repeat 1 45 0 3848 138 3 6 chr4 113919751 113920010 -70368652 - L1PB4 LINE L1 -365 5791 5533 223 279 0 25 chr4 113921175 113921254 -70367408 + (CATATA)n Simple_repeat Simple_repeat 4 80 0 219 272 0 0 chr4 113921255 113921336 -70367326 + (TATATG)n Simple_repeat Simple_repeat 3 83 0 1463 227 49 56 chr4 113921337 113921815 -70366847 - MLT1D LTR MaLR -9 645 22 599 274 65 0 chr4 113921829 113922015 -70366647 + Charlie5 DNA MER1_type 1053 1250 -1362 204 125 0 0 chr4 113922211 113922243 -70366419 + (TA)n Simple_repeat Simple_repeat 1 32 0 956 292 64 22 chr4 113922403 113923576 -70365086 + L1ME LINE L1 4381 5757 -405 1499 211 29 0 chr4 113923639 113923918 -70364744 + L1M1 LINE L1 1550 1836 -5729 1469 112 9 0 chr4 113924979 113925193 -70363469 - L1PA8A LINE L1 -2 6129 5914 4878 70 3 0 chr4 113925205 113925852 -70362810 + L1PA8A LINE L1 5254 5902 -229 2386 182 56 15 chr4 113925849 113926789 -70361873 + L1M1 LINE L1 1835 4133 -3432 * 51 79 0 0 chr4 113926789 113926903 -70361759 + AT_rich Low_complexity Low_complexity 1 114 0 29835 128 9 52 chr4 113928553 113934967 -70353695 + L1PA7 LINE L1 9 6159 0 199 0 0 0 chr4 113934967 113934989 -70353673 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 246 95 0 48 chr4 113935652 113935694 -70352968 - L1PA8A LINE L1 -196 5935 5896 2329 170 9 16 chr4 113937088 113937536 -70351126 - MER65A LTR ERV1 0 445 1 890 345 144 21 chr4 113938210 113939001 -70349661 + L2 LINE L2 1181 2068 -1246 1843 270 63 31 chr4 113939022 113939636 -70349026 - MER76 LTR ERV -54 634 1 1166 124 0 27 chr4 113939710 113939896 -70348766 - AluSg/x SINE Alu -3 309 129 586 342 216 5 chr4 113939917 113940364 -70348298 + L2 LINE L2 2777 3313 0 322 300 60 7 chr4 113942005 113942155 -70346507 - MER114 LTR ERV -482 166 9 22 88 0 0 chr4 113942677 113942734 -70345928 + AT_rich Low_complexity Low_complexity 1 57 0 1071 306 59 19 chr4 113942948 113943488 -70345174 + L1ME1 LINE L1 5576 6137 -29 319 250 151 53 chr4 113943791 113943943 -70344719 - L1ME LINE L1 -4566 1649 1483 316 293 65 42 chr4 113944044 113944426 -70344236 - L1ME LINE L1 -4998 1398 1008 303 270 11 62 chr4 113944490 113944617 -70344045 - L1ME LINE L1 -5939 266 148 688 244 146 32 chr4 113944723 113944969 -70343693 + MER93b LTR ERV1 90 363 -10 261 119 0 0 chr4 113945008 113945050 -70343612 + (TG)n Simple_repeat Simple_repeat 1 42 0 16566 199 10 26 chr4 113945228 113950450 -70338212 + L1PA14 LINE L1 1 5304 -2280 1722 190 0 0 chr4 113950450 113950740 -70337922 + AluSx SINE Alu 1 290 -22 16566 199 10 26 chr4 113950740 113951435 -70337227 + L1PA14 LINE L1 5304 6008 -1576 2354 85 0 0 chr4 113951435 113951730 -70336932 + AluY SINE Alu 1 295 -16 16566 199 10 26 chr4 113951730 113952461 -70336201 + L1PA14 LINE L1 6008 6810 -774 377 156 0 0 chr4 113952458 113952522 -70336140 - THE1-int LTR MaLR -771 809 746 * 1746 144 51 51 chr4 113953039 113953414 -70335248 - THE1C LTR MaLR 0 375 1 2660 129 9 0 chr4 113953414 113953834 -70334828 + L1PA14 LINE L1 6806 7229 -370 303 247 45 34 chr4 113953834 113953923 -70334739 + L1MC4 LINE L1 6615 6704 -1338 2267 133 8 6 chr4 113953973 113954335 -70334327 + L1PA14 LINE L1 7232 7594 -5 1367 276 50 59 chr4 113955383 113955923 -70332739 + MER77 LTR ERV1 54 588 -17 26 0 0 0 chr4 113956340 113956366 -70332296 + AT_rich Low_complexity Low_complexity 1 26 0 638 282 98 6 chr4 113956449 113956765 -70331897 + L1MD3 LINE L1 6933 7277 -718 293 319 30 30 chr4 113956766 113956901 -70331761 + MLT1F1 LTR MaLR 1 135 -432 2163 248 25 6 chr4 113956911 113957459 -70331203 + L1MD3 LINE L1 7429 7987 -8 358 288 34 63 chr4 113957502 113957707 -70330955 + L2 LINE L2 3067 3265 -48 1325 197 48 67 chr4 113957895 113958251 -70330411 - MLT1A1 LTR MaLR 0 365 17 248 210 0 16 chr4 113959147 113959209 -70329453 + L1MC4 LINE L1 6640 6700 -1342 369 121 43 43 chr4 113959211 113959351 -70329311 + (TA)n Simple_repeat Simple_repeat 2 141 0 225 0 0 0 chr4 113959351 113959376 -70329286 + (CA)n Simple_repeat Simple_repeat 2 26 0 24 53 0 0 chr4 113960004 113960042 -70328620 + AT_rich Low_complexity Low_complexity 1 38 0 351 0 0 0 chr4 113960258 113960297 -70328365 + (A)n Simple_repeat Simple_repeat 1 39 0 189 0 0 0 chr4 113960297 113960318 -70328344 + (GA)n Simple_repeat Simple_repeat 2 22 0 297 75 0 0 chr4 113960621 113960661 -70328001 + (TG)n Simple_repeat Simple_repeat 2 41 0 608 0 14 0 chr4 113961077 113961149 -70327513 + (GGAA)n Simple_repeat Simple_repeat 4 76 0 741 272 19 29 chr4 113961182 113961388 -70327274 - MER58A DNA MER1_type -16 208 5 7358 227 45 71 chr4 113961530 113964676 -70323986 - L1PB4 LINE L1 -2 6857 3872 2363 159 36 2 chr4 113964676 113965090 -70323572 + MSTA LTR MaLR 1 428 0 7358 227 45 71 chr4 113965090 113966306 -70322356 - L1PB4 LINE L1 -2987 3872 2625 4063 241 32 25 chr4 113966316 113967715 -70320947 - L1PBb LINE L1 -4014 2834 1335 249 333 0 0 chr4 113967701 113967788 -70320874 - L1PB4 LINE L1 -5286 1563 1477 * 335 333 28 0 chr4 113967789 113967897 -70320765 - L1PBb LINE L1 -5711 1138 1028 589 137 51 1 chr4 113968554 113968700 -70319962 - THE1B LTR MaLR 0 364 189 609 307 42 56 chr4 113968701 113968988 -70319674 - L1PBb LINE L1 -6557 292 10 195 162 0 0 chr4 113969906 113969943 -70318719 + (CA)n Simple_repeat Simple_repeat 2 38 0 264 283 82 13 chr4 113970053 113970212 -70318450 - L1M4 LINE L1 -1117 5029 4860 21 57 0 0 chr4 113970455 113970490 -70318172 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr4 113970883 113970911 -70317751 + AT_rich Low_complexity Low_complexity 1 28 0 483 18 0 0 chr4 113971123 113971179 -70317483 + (TATAA)n Simple_repeat Simple_repeat 2 57 0 2052 134 0 0 chr4 113971187 113971477 -70317185 + AluSq SINE Alu 1 290 -23 834 238 0 0 chr4 113971602 113971766 -70316896 - MER77 LTR ERV1 -4 601 438 22 56 0 0 chr4 113971993 113972029 -70316633 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr4 113972134 113972156 -70316506 + AT_rich Low_complexity Low_complexity 1 22 0 211 356 120 32 chr4 113972756 113973040 -70315622 + L2 LINE L2 2049 2357 -957 306 289 44 18 chr4 113973079 113973193 -70315469 - L2 LINE L2 -795 2519 2403 1033 53 0 0 chr4 113973243 113973376 -70315286 + L1PA4 LINE L1 6020 6152 -3 26 0 0 0 chr4 113973376 113973402 -70315260 + AT_rich Low_complexity Low_complexity 1 26 0 291 54 0 0 chr4 113973649 113973686 -70314976 + (CA)n Simple_repeat Simple_repeat 1 37 0 240 59 0 0 chr4 113974229 113974263 -70314399 + (TAAAAA)n Simple_repeat Simple_repeat 2 35 0 259 318 40 47 chr4 113974269 113974417 -70314245 + L2 LINE L2 2557 2703 -611 370 211 0 0 chr4 113974592 113974663 -70313999 - MLT1B LTR MaLR -16 374 304 865 124 0 0 chr4 113975912 113976049 -70312613 + L1MA3 LINE L1 6169 6305 0 2216 112 0 10 chr4 113976062 113976374 -70312288 + AluSx SINE Alu 1 309 -3 231 114 0 0 chr4 113976833 113976868 -70311794 + (T)n Simple_repeat Simple_repeat 1 35 0 412 304 105 5 chr4 113977165 113977356 -70311306 - Charlie8 DNA MER1_type -2140 277 68 26 30 0 0 chr4 113977515 113977548 -70311114 + AT_rich Low_complexity Low_complexity 1 33 0 1819 234 53 28 chr4 113978189 113978720 -70309942 + L1MDa LINE L1 17 560 -5980 638 314 39 20 chr4 113978724 113979212 -70309450 + L1M4 LINE L1 4890 5386 -760 876 158 0 0 chr4 113979493 113979626 -70309036 + AluSq/x SINE Alu 2 134 -178 661 237 72 9 chr4 113980285 113980477 -70308185 - MER61D LTR ERV1 -14 493 314 23 86 0 0 chr4 113981036 113981094 -70307568 + AT_rich Low_complexity Low_complexity 1 58 0 2169 128 3 0 chr4 113981661 113981973 -70306689 + AluSp SINE Alu 1 313 0 26 50 0 0 chr4 113982152 113982192 -70306470 + AT_rich Low_complexity Low_complexity 1 40 0 1716 174 41 26 chr4 113982746 113983085 -70305577 - MER7A DNA MER2_type 0 346 5 1310 323 117 23 chr4 113985908 113986821 -70301841 + L2 LINE L2 1548 2546 -768 446 286 44 12 chr4 113986827 113987079 -70301583 + L1MDa LINE L1 1348 1607 -5114 720 274 83 65 chr4 113987080 113987535 -70301127 + MLT2B1 LTR ERVL 1 520 0 24032 219 43 27 chr4 113987536 113988001 -70300661 + ERVL-B1 LTR ERVL 2 458 -5306 1875 144 0 3 chr4 113988001 113988300 -70300362 + AluSx SINE Alu 1 298 -14 24032 219 43 27 chr4 113988300 113993359 -70295303 + ERVL-B1 LTR ERVL 458 5615 -149 1246 192 24 38 chr4 113993366 113993658 -70295004 + L1MA9 LINE L1 5808 6095 -217 639 217 116 72 chr4 113993679 113993956 -70294706 + MLT2C2 LTR ERVL 124 412 -52 219 188 43 14 chr4 113993969 113994038 -70294624 + (TA)n Simple_repeat Simple_repeat 1 71 0 252 160 0 40 chr4 113994056 113994106 -70294556 + MLT2C2 LTR ERVL 367 414 0 671 320 58 16 chr4 113994143 113994590 -70294072 + L1MDa LINE L1 1640 2105 -4616 7013 59 14 35 chr4 113994663 113998399 -70290263 + L1PA5 LINE L1 2521 6179 0 2073 113 10 6 chr4 113998716 113999027 -70289635 + AluSq SINE Alu 1 312 -1 1253 243 87 38 chr4 113999342 113999848 -70288814 - L1M4 LINE L1 -1909 4237 3707 843 116 7 36 chr4 114000060 114000198 -70288464 - AluSq/x SINE Alu -178 134 1 253 338 172 6 chr4 114000325 114000482 -70288180 + MIR SINE MIR 32 214 -48 454 151 0 0 chr4 114000486 114000572 -70288090 + L1MA7 LINE L1 6206 6291 0 1328 208 14 34 chr4 114000575 114000868 -70287794 + AluJo SINE Alu 1 287 -25 258 136 0 0 chr4 114000868 114000912 -70287750 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 22 80 0 0 chr4 114001643 114001693 -70286969 + AT_rich Low_complexity Low_complexity 1 50 0 1944 105 0 0 chr4 114001696 114001962 -70286700 + AluSq SINE Alu 40 305 -8 2353 183 50 50 chr4 114003130 114003337 -70285325 + L1PB4 LINE L1 5577 5783 -373 657 118 0 0 chr4 114003337 114003456 -70285206 + (TA)n Simple_repeat Simple_repeat 1 119 0 2353 183 50 50 chr4 114003456 114003486 -70285176 + L1PB4 LINE L1 5783 5812 -344 1962 167 90 25 chr4 114003486 114003887 -70284775 - MSTA LTR MaLR 0 428 2 2353 183 50 50 chr4 114003887 114003918 -70284744 + L1PB4 LINE L1 5812 5842 -314 1602 181 55 27 chr4 114003918 114004283 -70284379 - THE1C LTR MaLR 0 375 1 8916 143 22 36 chr4 114004283 114005883 -70282779 - THE1C-int LTR MaLR 0 1580 3 1617 163 60 43 chr4 114005886 114006254 -70282408 - THE1C LTR MaLR -1 374 1 2353 183 50 50 chr4 114006254 114006557 -70282105 + L1PB4 LINE L1 5842 6155 -1 320 362 40 35 chr4 114007331 114007505 -70281157 - MIR3 SINE MIR -2 206 32 254 331 23 86 chr4 114008443 114008700 -70279962 + MIR SINE MIR 3 243 -19 785 292 20 30 chr4 114008719 114009020 -70279642 - L1ME3A LINE L1 -5 6165 5868 23 97 0 0 chr4 114009500 114009572 -70279090 + AT_rich Low_complexity Low_complexity 1 72 0 22 0 0 0 chr4 114009748 114009770 -70278892 + AT_rich Low_complexity Low_complexity 1 22 0 352 296 28 63 chr4 114009918 114010060 -70278602 + MIR SINE MIR 18 154 -108 2101 95 3 43 chr4 114010881 114011186 -70277476 - AluSp SINE Alu -20 293 1 310 358 60 25 chr4 114011251 114011533 -70277129 + ERVL LTR ERVL 2934 3225 -2539 871 193 0 34 chr4 114011549 114011725 -70276937 - FAM SINE Alu -1 174 5 452 420 38 17 chr4 114012154 114012739 -70275923 + ERVL LTR ERVL 4201 4797 -857 456 250 104 82 chr4 114013500 114013768 -70274894 + LTR16A1 LTR ERVL 182 455 -2 223 321 0 0 chr4 114013793 114013846 -70274816 - L2 LINE L2 -62 3210 3158 258 116 0 0 chr4 114014683 114014726 -70273936 + (CA)n Simple_repeat Simple_repeat 2 44 0 27 87 0 0 chr4 114014763 114014832 -70273830 + AT_rich Low_complexity Low_complexity 1 69 0 1569 145 35 8 chr4 114014975 114015230 -70273432 + MER2 DNA MER2_type 8 269 -76 1147 107 0 0 chr4 114016773 114016942 -70271720 + AluY SINE Alu 143 311 0 336 102 0 0 chr4 114016999 114017048 -70271614 + (TA)n Simple_repeat Simple_repeat 2 50 0 2646 157 19 23 chr4 114017500 114018016 -70270646 - L1MA6 LINE L1 0 6300 5787 310 171 0 37 chr4 114018036 114018118 -70270544 + (CATA)n Simple_repeat Simple_repeat 2 80 0 2520 180 7 53 chr4 114018119 114018770 -70269892 - L1MA6 LINE L1 -512 5788 5164 * 5909 196 35 40 chr4 114018764 114020232 -70268430 + L1MA6 LINE L1 3679 5140 -1006 416 349 43 10 chr4 114020246 114020455 -70268207 - MIR SINE MIR -40 222 7 21 57 0 0 chr4 114020512 114020547 -70268115 + AT_rich Low_complexity Low_complexity 1 35 0 252 0 0 0 chr4 114021807 114021835 -70266827 + (CA)n Simple_repeat Simple_repeat 2 29 0 257 286 23 10 chr4 114022000 114022134 -70266528 - MLT1J LTR MaLR -203 308 137 1208 128 0 0 chr4 114022187 114022359 -70266303 - AluY SINE Alu -10 301 130 22 35 0 0 chr4 114022521 114022550 -70266112 + AT_rich Low_complexity Low_complexity 1 29 0 393 200 44 76 chr4 114022557 114022692 -70265970 + FLAM_A SINE Alu 6 115 -18 1412 136 159 4 chr4 114022721 114022978 -70265684 - MER47A DNA MER2_type -65 301 5 365 301 77 13 chr4 114023231 114023387 -70265275 + LTR16A LTR ERVL 279 444 -6 2169 107 3 3 chr4 114023403 114023702 -70264960 + AluSc SINE Alu 1 299 -10 343 191 213 33 chr4 114025073 114025256 -70263406 + L1MD1 LINE L1 5184 5399 -747 797 244 41 0 chr4 114025303 114025524 -70263138 + L1MD1 LINE L1 6012 6241 -1 297 299 21 16 chr4 114025530 114025724 -70262938 + L1MC2 LINE L1 3072 3266 -2880 2855 190 28 8 chr4 114025815 114026522 -70262140 - L1PB4 LINE L1 -1 6153 5414 21 57 0 0 chr4 114026553 114026588 -70262074 + AT_rich Low_complexity Low_complexity 1 35 0 2250 292 90 23 chr4 114026685 114028146 -70260516 + L1MC2 LINE L1 3606 5165 -981 3242 175 75 63 chr4 114028153 114028218 -70260444 + L1MC2 LINE L1 5522 5585 -759 2012 118 59 0 chr4 114028218 114028507 -70260155 - AluSg SINE Alu -4 306 1 3242 175 75 63 chr4 114028507 114028962 -70259700 + L1MC2 LINE L1 5585 6058 -286 1726 197 0 0 chr4 114028962 114029262 -70259400 - AluJb SINE Alu -12 300 1 3242 175 75 63 chr4 114029262 114029553 -70259109 + L1MC2 LINE L1 6058 6344 0 1944 143 3 0 chr4 114029554 114029841 -70258821 - AluSx SINE Alu -22 290 3 230 265 0 0 chr4 114029991 114030040 -70258622 + L1MC4 LINE L1 6841 6889 -1153 1498 165 6 113 chr4 114030045 114030448 -70258214 + MER46B DNA MER2_type 1 236 0 1199 250 117 51 chr4 114030499 114031131 -70257531 + L1MC4 LINE L1 7213 7886 -156 846 244 44 0 chr4 114031131 114031401 -70257261 - Tigger6 DNA MER2_type -2 1595 1314 * 3680 239 26 20 chr4 114031386 114031694 -70256968 - Tigger6a DNA MER2_type -644 953 648 2119 106 0 0 chr4 114031694 114031987 -70256675 - AluSg SINE Alu -17 293 1 3680 239 26 20 chr4 114031987 114032625 -70256037 - Tigger6a DNA MER2_type -949 648 1 292 225 25 58 chr4 114032715 114032835 -70255827 + L1MC4 LINE L1 7914 8029 -13 411 237 29 10 chr4 114033661 114033782 -70254880 - FLAM_A SINE Alu -13 120 28 24 32 0 0 chr4 114033882 114033913 -70254749 + AT_rich Low_complexity Low_complexity 1 31 0 410 325 78 22 chr4 114034422 114034693 -70253969 + LTR16A LTR ERVL 159 444 -6 24 32 0 0 chr4 114034736 114034767 -70253895 + AT_rich Low_complexity Low_complexity 1 31 0 262 333 12 0 chr4 114034902 114034986 -70253676 - MER5A DNA MER1_type 0 189 105 2109 95 48 0 chr4 114035018 114035312 -70253350 - AluSx SINE Alu -2 310 3 182 208 19 0 chr4 114035481 114035534 -70253128 + (TA)n Simple_repeat Simple_repeat 1 54 0 21 57 0 0 chr4 114036485 114036520 -70252142 + AT_rich Low_complexity Low_complexity 1 35 0 279 133 0 0 chr4 114036709 114036754 -70251908 + (CA)n Simple_repeat Simple_repeat 1 45 0 1796 162 24 18 chr4 114037746 114037882 -70250780 - MER47A DNA MER2_type -1957 366 232 3239 153 15 34 chr4 114037882 114038497 -70250165 + LTR26 LTR ERV1 1 603 0 1796 162 24 18 chr4 114038497 114038688 -70249974 - MER47A DNA MER2_type -2091 232 37 9901 194 12 2 chr4 114038728 114040492 -70248170 + ERVL-B3 LTR ERVL 3974 5755 -9 2205 247 20 39 chr4 114040494 114041053 -70247609 + MLT2B3 LTR ERVL 1 548 -6 281 349 28 9 chr4 114041228 114041337 -70247325 - L2 LINE L2 -21 3292 3182 38 0 0 0 chr4 114041579 114041617 -70247045 + AT_rich Low_complexity Low_complexity 1 38 0 47 44 0 0 chr4 114041684 114041752 -70246910 + AT_rich Low_complexity Low_complexity 1 68 0 878 166 19 0 chr4 114042315 114042472 -70246190 + L1MA8 LINE L1 5994 6153 -138 8136 213 20 7 chr4 114042500 114044892 -70243770 - L1P4 LINE L1 -436 5730 3305 3735 62 23 2 chr4 114044892 114045372 -70243290 + LTR2B LTR ERV1 1 490 0 2638 106 5 3 chr4 114045372 114045751 -70242911 + Harlequin LTR ERV1 1 380 -6516 * 4565 85 11 14 chr4 114045746 114046390 -70242272 + Harlequin LTR ERV1 262 903 -5993 * 6736 65 40 1 chr4 114046375 114047340 -70241322 + Harlequin LTR ERV1 1572 2574 -4322 4778 62 13 0 chr4 114047339 114047935 -70240727 + Harlequin LTR ERV1 3352 3955 -2941 * 10130 143 14 1 chr4 114047920 114049529 -70239133 + Harlequin LTR ERV1 4246 5876 -1020 212 353 70 13 chr4 114049845 114050001 -70238661 + L2 LINE L2 2059 2223 -1091 291 128 70 6 chr4 114050041 114050197 -70238465 + (TA)n Simple_repeat Simple_repeat 1 166 0 237 351 13 0 chr4 114050387 114050464 -70238198 - MIR SINE MIR -116 146 69 413 315 87 0 chr4 114050556 114050705 -70237957 + L2 LINE L2 2594 2755 -559 1781 180 43 122 chr4 114050978 114051293 -70237369 - L1M4 LINE L1 -1519 4627 4387 2521 125 5 30 chr4 114051293 114051732 -70236930 - L1MA6 LINE L1 0 6300 5873 1781 180 43 122 chr4 114051732 114052062 -70236600 - L1M4 LINE L1 -1759 4387 4033 207 0 0 0 chr4 114052193 114052216 -70236446 + (CAA)n Simple_repeat Simple_repeat 2 24 0 351 197 103 54 chr4 114052558 114052781 -70235881 + L1MDa LINE L1 2314 2547 -3993 1403 214 59 43 chr4 114052784 114053224 -70235438 + L1MB8 LINE L1 5679 6125 -53 1227 213 45 32 chr4 114053220 114053600 -70235062 - L1MA8 LINE L1 -1 6290 5906 * 206 352 51 88 chr4 114054488 114054761 -70233901 + L2 LINE L2 1154 1416 -1898 2471 28 0 0 chr4 114054969 114055256 -70233406 - L1P2 LINE L1 -408 5747 5461 7262 35 10 1 chr4 114055256 114056446 -70232216 + L1PA5 LINE L1 4952 6152 -2 1168 214 63 113 chr4 114056709 114057388 -70231274 + L1MEc LINE L1 1621 2265 -4131 496 159 47 0 chr4 114057391 114057498 -70231164 + L1MC3 LINE L1 6978 7089 -696 243 244 37 49 chr4 114057503 114057585 -70231077 + MLT1F1 LTR MaLR 39 119 -448 1491 244 78 6 chr4 114057636 114058136 -70230526 + L1M4 LINE L1 4646 5181 -965 1990 14 0 0 chr4 114059241 114059460 -70229202 + AluY SINE Alu 77 295 -16 2098 199 7 5 chr4 114114285 114114703 -70173959 - L1MB1 LINE L1 -284 5905 5487 1757 162 3 33 chr4 114114703 114115006 -70173656 + AluJb SINE Alu 1 294 -18 1608 243 11 6 chr4 114115015 114115537 -70173125 + L1M2 LINE L1 4949 5474 -743 12465 93 28 26 chr4 114116772 114119168 -70169494 - HERVH LTR ERV1 -5214 2499 1 2360 92 9 9 chr4 114119170 114119519 -70169143 - LTR7 LTR ERV1 -2 448 100 181 259 52 0 chr4 114119521 114119579 -70169083 + L2 LINE L2 2556 2616 -698 492 122 0 0 chr4 114119669 114119743 -70168919 + AluSp/q SINE Alu 230 303 -10 499 268 107 46 chr4 114119837 114120284 -70168378 + L1ME1 LINE L1 824 1188 -4925 528 281 133 44 chr4 114120303 114120762 -70167900 + L1ME1 LINE L1 1866 2365 -4031 699 249 94 55 chr4 114120936 114121318 -70167344 + L1ME1 LINE L1 2627 3032 -3183 2246 113 3 0 chr4 114121318 114121629 -70167033 + AluSp SINE Alu 2 313 0 699 249 94 55 chr4 114121629 114121716 -70166946 + L1ME1 LINE L1 3032 3114 -3101 5988 122 2 14 chr4 114121819 114122701 -70165961 + Harlequin LTR ERV1 6025 6896 0 3602 70 34 2 chr4 114122701 114123176 -70165486 + LTR2B LTR ERV1 1 490 0 4007 272 32 15 chr4 114123176 114124655 -70164007 - L1P LINE L1 -2838 3308 1805 22 0 0 0 chr4 114125060 114125082 -70163580 + AT_rich Low_complexity Low_complexity 1 22 0 2155 122 0 7 chr4 114125928 114126232 -70162430 - AluSg SINE Alu 0 310 9 1175 110 0 0 chr4 114126696 114126878 -70161784 + AluSp SINE Alu 132 313 0 269 139 0 0 chr4 114127791 114127834 -70160828 + tRNA-Cys-TGC tRNA tRNA 1 43 -32 1084 307 49 45 chr4 114128230 114129341 -70159321 + L1ME1 LINE L1 3822 4972 -1243 494 232 70 43 chr4 114129354 114129539 -70159123 - L1 LINE L1 -1556 4590 4401 6963 204 31 6 chr4 114129539 114131166 -70157496 - L1 LINE L1 -2091 4055 2388 1546 150 0 59 chr4 114131166 114131472 -70157190 + L1PB4 LINE L1 5856 6143 -13 1330 275 77 45 chr4 114131652 114131724 -70156938 + L1ME1 LINE L1 5196 5264 -971 2284 91 0 0 chr4 114131724 114132020 -70156642 + AluY SINE Alu 1 296 -15 1330 275 77 45 chr4 114132020 114132938 -70155724 + L1ME1 LINE L1 5264 6225 -10 4138 266 85 36 chr4 114133124 114134570 -70154092 - L1MC3 LINE L1 0 7785 6269 1858 155 126 18 chr4 114134570 114134950 -70153712 + MSTA LTR MaLR 1 421 -7 1693 251 51 2 chr4 114134975 114135461 -70153201 - L1MC3 LINE L1 -1514 6271 5762 1524 239 85 14 chr4 114135571 114136007 -70152655 - MLT1C LTR MaLR 0 467 1 1965 127 62 8 chr4 114136361 114136701 -70151961 - MER61C LTR ERV1 0 434 84 1795 97 0 0 chr4 114137092 114137320 -70151342 - AluSx SINE Alu -84 228 1 786 268 63 36 chr4 114137368 114137578 -70151084 + MLT1D LTR MaLR 1 204 -301 1642 172 7 27 chr4 114137578 114137874 -70150788 + AluJo SINE Alu 11 300 -12 786 268 63 36 chr4 114137874 114138094 -70150568 + MLT1D LTR MaLR 204 503 -2 268 300 44 44 chr4 114138292 114138519 -70150143 - L1MEd LINE L1 -4900 1219 993 237 108 0 0 chr4 114140108 114140145 -70148517 + (TG)n Simple_repeat Simple_repeat 1 37 0 1844 164 92 84 chr4 114140326 114140826 -70147836 - MER67D LTR ERV1 -8 506 3 1391 119 0 0 chr4 114141834 114142028 -70146634 - LTR8 LTR ERV1 0 691 498 1379 143 8 54 chr4 114142038 114142296 -70146366 - LTR8 LTR ERV1 -445 246 1 2635 86 106 5 chr4 114142361 114142768 -70145894 - LTR7 LTR ERV1 -2 448 1 2251 102 62 11 chr4 114142768 114143141 -70145521 - HERVH LTR ERV1 0 7713 7322 1429 115 18 5 chr4 114143139 114143356 -70145306 - HERVH LTR ERV1 -1894 5819 5600 * 4395 142 0 1 chr4 114143357 114144020 -70144642 - HERVH LTR ERV1 -2564 5149 4488 3178 108 29 6 chr4 114144022 114144513 -70144149 - HERVH LTR ERV1 -3720 3993 3492 869 155 20 0 chr4 114144503 114144651 -70144011 - HERVH LTR ERV1 -4423 3290 3140 * 2258 123 6 11 chr4 114144645 114145003 -70143659 - HERVH LTR ERV1 -4726 2987 2632 1805 155 3 78 chr4 114145384 114145745 -70142917 + MER1B DNA MER1_type 1 334 -3 211 273 23 30 chr4 114146346 114146478 -70142184 + (TATATG)n Simple_repeat Simple_repeat 4 134 0 296 255 20 20 chr4 114146773 114146875 -70141787 - MER94 DNA DNA -26 108 7 962 252 37 88 chr4 114147460 114148348 -70140314 + MER52A LTR ERV1 654 1752 -3 388 131 0 0 chr4 114149011 114149099 -70139563 + AluJ/FRAM SINE Alu 224 311 0 2268 64 7 0 chr4 114149629 114149940 -70138722 - AluY SINE Alu 0 314 2 2077 86 19 48 chr4 114150179 114150492 -70138170 - AluY SINE Alu -7 304 1 29 60 0 0 chr4 114150606 114150656 -70138006 + AT_rich Low_complexity Low_complexity 1 50 0 1082 222 89 19 chr4 114151063 114151329 -70137333 - L1MB5 LINE L1 -10 6164 5918 210 71 0 0 chr4 114151329 114151357 -70137305 + (CA)n Simple_repeat Simple_repeat 2 29 0 1082 222 89 19 chr4 114151357 114151715 -70136947 - L1MB5 LINE L1 -256 5918 5386 356 243 29 73 chr4 114152644 114152780 -70135882 - MLT1H LTR MaLR -2 547 418 373 301 96 59 chr4 114152859 114153098 -70135564 - MLT1H LTR MaLR -231 318 71 2318 49 42 3 chr4 114153614 114153900 -70134762 - AluY SINE Alu -14 297 1 21 0 0 0 chr4 114156173 114156194 -70132468 + AT_rich Low_complexity Low_complexity 1 21 0 1839 168 3 0 chr4 114156361 114156646 -70132016 - MER1B DNA MER1_type -49 290 5 202 221 44 44 chr4 114156737 114156805 -70131857 + MIR SINE MIR 50 117 -145 223 304 71 27 chr4 114156970 114157082 -70131580 - L2 LINE L2 -18 3295 3179 679 223 66 12 chr4 114157291 114157457 -70131205 + MER5B DNA MER1_type 4 178 0 236 415 29 22 chr4 114157556 114157831 -70130831 - L3 LINE CR1 -283 1294 1018 526 191 0 11 chr4 114158531 114158625 -70130037 - MER50 LTR ERV1 -2 732 640 323 49 0 0 chr4 114158625 114158666 -70129996 - L1PA4 LINE L1 -258 5897 5857 1280 43 0 0 chr4 114158666 114158827 -70129835 + L1PA4 LINE L1 5994 6155 0 1064 108 7 198 chr4 114158838 114159116 -70129546 - MER50 LTR ERV1 -77 657 433 * 1373 110 16 75 chr4 114159099 114159354 -70129308 - MER50 LTR ERV1 -494 240 1 426 291 78 0 chr4 114159355 114159534 -70129128 - MIR SINE MIR -2 260 68 246 270 63 95 chr4 114159637 114159763 -70128899 - L2 LINE L2 -6 3307 3186 2031 101 10 52 chr4 114159820 114160127 -70128535 + AluSx SINE Alu 6 299 -13 591 303 81 13 chr4 114160536 114160770 -70127892 + L1MCb LINE L1 218 467 -5578 357 75 0 0 chr4 114160930 114160983 -70127679 + (CAA)n Simple_repeat Simple_repeat 2 54 0 1241 136 116 39 chr4 114161030 114161384 -70127278 + MER67D LTR ERV1 3 407 -241 2083 189 43 44 chr4 114161495 114162103 -70126559 + MER31-int LTR ERV1 893 1499 -3437 22 0 0 0 chr4 114162127 114162149 -70126513 + AT_rich Low_complexity Low_complexity 1 22 0 616 210 54 31 chr4 114162149 114162373 -70126289 + MER31-int LTR ERV1 1683 1911 -3025 332 343 73 0 chr4 114162635 114162772 -70125890 + MIR SINE MIR 2 148 -114 27 49 0 0 chr4 114162960 114163001 -70125661 + AT_rich Low_complexity Low_complexity 1 41 0 1054 134 12 12 chr4 114163256 114163428 -70125234 - THE1C LTR MaLR -203 172 1 2061 179 29 8 chr4 114163440 114163815 -70124847 - MSTB LTR MaLR -23 403 21 239 280 48 21 chr4 114163951 114164137 -70124525 + L1MCb LINE L1 1909 2099 -4465 366 23 0 0 chr4 114164138 114164181 -70124481 + (TA)n Simple_repeat Simple_repeat 2 44 0 2251 76 3 51 chr4 114164182 114164497 -70124165 + AluY SINE Alu 1 300 -11 732 287 150 14 chr4 114164519 114165007 -70123655 + L1MCb LINE L1 2247 2800 -3945 330 260 141 26 chr4 114165031 114165223 -70123439 + L1MCb LINE L1 2802 3015 -3549 732 261 105 7 chr4 114165261 114165537 -70123125 + L1ME3A LINE L1 5859 6161 -9 21 0 0 0 chr4 114165767 114165788 -70122874 + AT_rich Low_complexity Low_complexity 1 21 0 607 105 0 0 chr4 114166180 114166275 -70122387 + L1MA5 LINE L1 6206 6300 0 21 0 0 0 chr4 114166640 114166661 -70122001 + AT_rich Low_complexity Low_complexity 1 21 0 29 78 0 0 chr4 114166949 114167013 -70121649 + AT_rich Low_complexity Low_complexity 1 64 0 1884 159 0 10 chr4 114167070 114167366 -70121296 + AluSx SINE Alu 5 297 -15 943 330 28 39 chr4 114168590 114169048 -70119614 - L2 LINE L2 -5 3308 2856 1246 242 54 39 chr4 114169236 114169699 -70118963 - L1MD1 LINE L1 -336 5906 5437 264 238 12 12 chr4 114169711 114169791 -70118871 - L1MC2 LINE L1 -13 6331 6252 511 299 66 116 chr4 114170589 114171285 -70117377 - L2 LINE L2 -978 2336 1676 26 64 0 0 chr4 114171952 114171999 -70116663 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr4 114172148 114172170 -70116492 + AT_rich Low_complexity Low_complexity 1 22 0 1045 216 38 17 chr4 114172527 114172763 -70115899 + L1M3e LINE L1 1 241 -6789 3862 221 71 26 chr4 114172833 114173608 -70115054 + L1MCb LINE L1 2980 3719 -2845 392 88 0 216 chr4 114173608 114173710 -70114952 - MADE1 DNA Mariner 0 80 1 3862 221 71 26 chr4 114173710 114173917 -70114745 + L1MCb LINE L1 3719 3915 -2649 5463 59 0 1 chr4 114173917 114174607 -70114055 - L1PA5 LINE L1 -4 6150 5462 3862 221 71 26 chr4 114174607 114174914 -70113748 + L1MCb LINE L1 3915 4328 -2236 334 191 16 0 chr4 114175058 114175121 -70113541 + LTR4 LTR ERV1 294 357 -239 1227 176 13 86 chr4 114175137 114175439 -70113223 + LTR4 LTR ERV1 317 596 0 2031 185 31 8 chr4 114175439 114175796 -70112866 + HERV3 LTR ERV1 2 366 -8060 * 7249 150 24 12 chr4 114175784 114176936 -70111726 + HERV3 LTR ERV1 274 1439 -6987 * 16875 139 43 8 chr4 114176908 114179717 -70108945 + HERV3 LTR ERV1 3776 6722 -1704 3749 114 8 0 chr4 114179700 114180217 -70108445 + HERV3 LTR ERV1 7906 8426 0 * 1295 178 10 86 chr4 114180446 114180749 -70107913 + LTR4 LTR ERV1 317 596 0 4823 204 59 22 chr4 114180749 114182066 -70106596 + L1MA9 LINE L1 3907 5374 -917 2133 121 3 0 chr4 114182066 114182363 -70106299 - AluSq SINE Alu -15 298 1 4823 204 59 22 chr4 114182363 114182799 -70105863 + L1MA9 LINE L1 5374 5793 -498 776 189 0 0 chr4 114182920 114183047 -70105615 - FLAM_C SINE Alu -6 127 1 1833 200 91 2 chr4 114183082 114183533 -70105129 + L1MA9 LINE L1 5816 6306 -6 27 49 0 0 chr4 114183555 114183596 -70105066 + AT_rich Low_complexity Low_complexity 1 41 0 1613 282 31 7 chr4 114185076 114185527 -70103135 + LTR16C LTR ERVL 26 487 -4 430 255 0 0 chr4 114185922 114186020 -70102642 - ERVL LTR ERVL -755 5009 4912 32 43 0 0 chr4 114186248 114186294 -70102368 + AT_rich Low_complexity Low_complexity 1 46 0 337 278 111 8 chr4 114186309 114186435 -70102227 - ERVL LTR ERVL -1194 4570 4432 834 308 105 22 chr4 114186578 114186948 -70101714 - LTR40a LTR ERVL -118 401 1 331 316 110 42 chr4 114186959 114187196 -70101466 - ERVL LTR ERVL -1332 4322 4070 741 328 66 11 chr4 114187702 114188068 -70100594 - ERVL LTR ERVL -2287 3477 3092 21 0 0 0 chr4 114188410 114188431 -70100231 + AT_rich Low_complexity Low_complexity 1 21 0 233 210 48 0 chr4 114188662 114188724 -70099938 - MER103 DNA DNA -63 103 39 214 300 38 38 chr4 114188967 114189047 -70099615 + MER5B DNA MER1_type 1 80 -98 4047 151 11 8 chr4 114189802 114190466 -70098196 + THE1C-int LTR MaLR 915 1580 0 2498 128 0 3 chr4 114190466 114190842 -70097820 + THE1C LTR MaLR 1 375 0 567 273 100 50 chr4 114191391 114191970 -70096692 + L1ME2 LINE L1 3012 3619 -2527 53 17 0 0 chr4 114192006 114192066 -70096596 + AT_rich Low_complexity Low_complexity 1 60 0 419 273 50 79 chr4 114192066 114192444 -70096218 + L1ME2 LINE L1 3781 4147 -1999 380 330 0 0 chr4 114192456 114192565 -70096097 + FLAM_A SINE Alu 2 110 -23 387 274 89 48 chr4 114192663 114192911 -70095751 + L1ME2 LINE L1 4999 5256 -890 278 192 0 13 chr4 114193449 114193527 -70095135 + CT-rich Low_complexity Low_complexity 1 77 0 429 260 0 84 chr4 114193533 114193687 -70094975 + L1ME2 LINE L1 5401 5541 -623 263 61 0 0 chr4 114193687 114193720 -70094942 + U2 snRNA snRNA 1 33 -155 596 213 22 0 chr4 114193773 114193909 -70094753 + L1ME2 LINE L1 5630 5768 -396 498 235 25 31 chr4 114194040 114194202 -70094460 + PABL_B LTR ERV1 437 597 -70 480 271 15 74 chr4 114194217 114194486 -70094176 + L1ME2 LINE L1 5754 6006 -158 1442 259 25 49 chr4 114194503 114194909 -70093753 - MER77 LTR ERV1 -3 602 207 22 35 0 0 chr4 114195141 114195170 -70093492 + AT_rich Low_complexity Low_complexity 1 29 0 33 43 0 0 chr4 114195491 114195538 -70093124 + AT_rich Low_complexity Low_complexity 1 47 0 458 330 44 15 chr4 114195617 114195820 -70092842 - MIR SINE MIR -51 211 3 4490 184 28 32 chr4 114196986 114197421 -70091241 + L1MB3 LINE L1 4869 5304 -879 2155 169 49 16 chr4 114197421 114197852 -70090810 + MER65A LTR ERV1 1 445 0 4490 184 28 32 chr4 114197852 114198715 -70089947 + L1MB3 LINE L1 5304 6176 -7 683 60 28 44 chr4 114200480 114200662 -70088000 + (TA)n Simple_repeat Simple_repeat 2 180 0 359 288 91 0 chr4 114201149 114201281 -70087381 + MLT1L LTR MaLR 417 560 -55 272 373 93 0 chr4 114201333 114201494 -70087168 + MER5B DNA MER1_type 1 176 -2 305 109 18 0 chr4 114202363 114202418 -70086244 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 1705 142 30 20 chr4 114202494 114202797 -70085865 - AluSx SINE Alu -6 306 1 877 150 157 0 chr4 114203316 114203469 -70085193 - THE1C-int LTR MaLR -924 656 480 216 0 0 0 chr4 114203469 114203493 -70085169 + (T)n Simple_repeat Simple_repeat 1 24 0 2580 127 111 5 chr4 114204243 114204692 -70083970 - THE1C-int LTR MaLR -1082 498 2 2494 119 0 14 chr4 114204692 114205063 -70083599 - THE1C LTR MaLR -9 366 1 1813 169 43 22 chr4 114205622 114206177 -70082485 + L1M2 LINE L1 5149 5705 -607 1362 192 37 4 chr4 114206265 114206381 -70082281 + AluJb SINE Alu 1 112 -200 342 0 0 0 chr4 114206381 114206419 -70082243 + (CA)n Simple_repeat Simple_repeat 1 38 0 1362 192 37 4 chr4 114206419 114206573 -70082089 + AluJb SINE Alu 112 280 -32 974 100 22 22 chr4 114206578 114206758 -70081904 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 246 81 0 0 chr4 114206758 114206795 -70081867 + (GGAA)n Simple_repeat Simple_repeat 3 39 0 641 315 22 8 chr4 114207223 114207490 -70081172 - L1ME1 LINE L1 0 6166 5896 286 274 25 54 chr4 114207945 114208164 -70080498 - L1ME1 LINE L1 -567 5766 5558 1492 278 36 53 chr4 114208241 114209138 -70079524 - L1ME1 LINE L1 -859 5287 4407 1102 262 41 41 chr4 114209142 114209654 -70079008 - L1ME1 LINE L1 -3278 2868 2357 1070 241 10 48 chr4 114210566 114210877 -70077785 + L1MA10 LINE L1 6035 6333 -1 31 44 0 0 chr4 114210982 114211027 -70077635 + AT_rich Low_complexity Low_complexity 1 45 0 26 30 0 0 chr4 114211365 114211398 -70077264 + AT_rich Low_complexity Low_complexity 1 33 0 2099 98 7 29 chr4 114211467 114211773 -70076889 - AluSq SINE Alu -14 299 1 25 31 0 0 chr4 114212151 114212183 -70076479 + AT_rich Low_complexity Low_complexity 1 32 0 461 211 94 0 chr4 114212927 114213055 -70075607 + L1MA9 LINE L1 6172 6311 -1 272 135 0 0 chr4 114213784 114213821 -70074841 + U6 snRNA snRNA 1 37 -70 21 0 0 0 chr4 114214555 114214576 -70074086 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr4 114214888 114214925 -70073737 + AT_rich Low_complexity Low_complexity 1 37 0 2465 67 0 22 chr4 114215104 114215420 -70073242 - AluY SINE Alu 0 311 3 293 330 205 9 chr4 114215465 114215680 -70072982 + MIR SINE MIR 6 262 0 27 0 0 0 chr4 114215872 114215899 -70072763 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr4 114215985 114216006 -70072656 + AT_rich Low_complexity Low_complexity 1 21 0 1481 176 94 63 chr4 114216290 114216705 -70071957 - MSTA LTR MaLR 0 428 1 7906 172 16 40 chr4 114216705 114218229 -70070433 - THE1C-int LTR MaLR 0 1580 94 1591 168 28 11 chr4 114218229 114218514 -70070148 - THE1C LTR MaLR -68 307 18 234 259 17 0 chr4 114218609 114218667 -70069995 + (CA)n Simple_repeat Simple_repeat 1 59 0 21 0 0 0 chr4 114219500 114219521 -70069141 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr4 114220025 114220063 -70068599 + AT_rich Low_complexity Low_complexity 1 38 0 1602 189 53 0 chr4 114220067 114220385 -70068277 + MER7A DNA MER2_type 14 346 0 21 0 0 0 chr4 114221337 114221358 -70067304 + AT_rich Low_complexity Low_complexity 1 21 0 347 301 65 38 chr4 114221887 114222073 -70066589 - MLT1H LTR MaLR -255 294 104 556 346 106 18 chr4 114222486 114222827 -70065835 - LTR16A LTR ERVL -49 401 31 21 36 0 0 chr4 114223410 114223438 -70065224 + AT_rich Low_complexity Low_complexity 1 28 0 793 287 51 53 chr4 114223661 114224169 -70064493 + L1M4 LINE L1 4019 4525 -1621 924 257 31 55 chr4 114224189 114224574 -70064088 + L1M4 LINE L1 4695 5070 -1076 3011 157 80 27 chr4 114224615 114225519 -70063143 + L1MA6 LINE L1 126 1159 -5704 6665 104 33 8 chr4 114225553 114226617 -70062045 + L1MA6 LINE L1 1465 2555 -4308 3091 206 11 26 chr4 114226609 114226833 -70061829 + L1MA6 LINE L1 3759 3985 -2877 * 1760 89 55 62 chr4 114226833 114227124 -70061538 + AluY SINE Alu 23 311 0 3091 206 11 26 chr4 114227124 114227657 -70061005 + L1MA6 LINE L1 3985 4504 -2358 510 113 0 0 chr4 114227658 114227729 -70060933 - AluJ/FLAM SINE Alu -236 76 6 5361 184 30 42 chr4 114227736 114229656 -70059006 + L1MA6 LINE L1 5130 7016 0 183 42 0 0 chr4 114229727 114229751 -70058911 + (TA)n Simple_repeat Simple_repeat 1 24 0 28 0 0 0 chr4 114229776 114229804 -70058858 + AT_rich Low_complexity Low_complexity 1 28 0 514 263 139 13 chr4 114229809 114230110 -70058552 + L1M4 LINE L1 4521 4859 -1287 690 306 50 35 chr4 114230678 114231337 -70057325 - L1MDb LINE L1 -1446 4960 4292 194 114 0 68 chr4 114231408 114231452 -70057210 + (GA)n Simple_repeat Simple_repeat 1 41 0 308 299 58 79 chr4 114231768 114232046 -70056616 + LTR16C LTR ERVL 198 469 -22 3135 242 118 69 chr4 114232449 114234112 -70054550 - L1MDb LINE L1 -2236 4170 2589 192 77 0 0 chr4 114234112 114234138 -70054524 + (CTTTG)n Simple_repeat Simple_repeat 2 27 0 3135 242 118 69 chr4 114234138 114234623 -70054039 - L1MDb LINE L1 -3817 2589 2129 791 222 0 0 chr4 114234623 114234767 -70053895 - AluJb SINE Alu -15 297 154 3135 242 118 69 chr4 114234767 114235106 -70053556 - L1MDb LINE L1 -4277 2129 1808 2148 108 20 0 chr4 114235106 114235411 -70053251 - AluY SINE Alu 0 311 1 3135 242 118 69 chr4 114235411 114235968 -70052694 - L1MDb LINE L1 -4598 1808 845 2193 135 0 0 chr4 114236093 114236405 -70052257 - AluSq SINE Alu -1 312 1 4722 70 8 0 chr4 114237289 114237902 -70050760 - L1PA6 LINE L1 -1 6153 5536 12226 68 4 0 chr4 114237908 114239532 -70049130 - L1PA6 LINE L1 -1078 5068 3439 873 226 9 5 chr4 114239526 114239747 -70048915 - L1 LINE L1 -3636 2510 2289 * 698 56 0 0 chr4 114240595 114240685 -70047977 - AluSg/x SINE Alu -18 292 203 * 752 44 0 0 chr4 114240682 114240773 -70047889 - AluY SINE Alu -202 109 19 4806 161 14 7 chr4 114240773 114241606 -70047056 - L1PA15 LINE L1 -9 6156 5318 33 43 0 0 chr4 114242440 114242487 -70046175 + AT_rich Low_complexity Low_complexity 1 47 0 38 51 0 0 chr4 114242688 114242747 -70045915 + AT_rich Low_complexity Low_complexity 1 59 0 21 0 0 0 chr4 114243951 114243972 -70044690 + AT_rich Low_complexity Low_complexity 1 21 0 238 195 61 73 chr4 114245345 114245427 -70043235 + L1MC/D LINE L1 5706 5786 -2022 23 33 0 0 chr4 114247486 114247516 -70041146 + AT_rich Low_complexity Low_complexity 1 30 0 558 181 0 11 chr4 114248556 114248677 -70039985 + FLAM_A SINE Alu 23 142 0 22 56 0 0 chr4 114248711 114248747 -70039915 + AT_rich Low_complexity Low_complexity 1 36 0 28 0 0 0 chr4 114249126 114249154 -70039508 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr4 114249600 114249631 -70039031 + AT_rich Low_complexity Low_complexity 1 31 0 241 338 117 7 chr4 114250547 114250692 -70037970 - MIR SINE MIR -30 232 72 3667 195 35 8 chr4 114251234 114251948 -70036714 + MER44D DNA MER2_type 1 605 0 195 162 0 0 chr4 114253837 114253874 -70034788 + CT-rich Low_complexity Low_complexity 3 39 0 2174 133 14 8 chr4 114255484 114255837 -70032825 + THE1A LTR MaLR 1 355 0 10977 115 6 1 chr4 114255837 114257408 -70031254 + THE1A-int LTR MaLR 1 1580 0 2241 119 11 8 chr4 114257410 114257762 -70030900 + THE1A LTR MaLR 3 355 0 2897 234 48 68 chr4 114259162 114260030 -70028632 + L1MCb LINE L1 39 923 -5641 480 96 12 48 chr4 114260030 114260113 -70028549 - MADE1 DNA Mariner 0 80 1 2897 234 48 68 chr4 114260113 114260663 -70027999 + L1MCb LINE L1 923 1483 -5081 2158 96 6 43 chr4 114260663 114260986 -70027676 + AluSq SINE Alu 1 311 -2 2897 234 48 68 chr4 114260986 114261341 -70027321 + L1MCb LINE L1 1483 1873 -4691 2238 103 7 0 chr4 114261341 114261643 -70027019 - AluSc SINE Alu -5 304 1 2897 234 48 68 chr4 114261643 114261835 -70026827 + L1MCb LINE L1 1873 2067 -4497 207 0 0 0 chr4 114263210 114263233 -70025429 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 393 236 159 101 chr4 114263400 114263658 -70025004 + L3 LINE CR1 440 712 -865 242 254 127 51 chr4 114263682 114263800 -70024862 + L2 LINE L2 3187 3313 0 22 56 0 0 chr4 114264615 114264651 -70024011 + AT_rich Low_complexity Low_complexity 1 36 0 23 78 0 0 chr4 114265114 114265165 -70023497 + AT_rich Low_complexity Low_complexity 1 51 0 198 0 0 0 chr4 114265793 114265815 -70022847 + (TG)n Simple_repeat Simple_repeat 1 22 0 2568 159 27 12 chr4 114266096 114266579 -70022083 - L1PA16 LINE L1 -1 6165 5676 2328 179 53 20 chr4 114266957 114267450 -70021212 - LTR22 LTR ERVK 0 509 1 25 31 0 0 chr4 114267525 114267557 -70021105 + AT_rich Low_complexity Low_complexity 1 32 0 6188 203 34 14 chr4 114267720 114270153 -70018509 + L1PA16 LINE L1 3685 6166 0 1309 261 62 18 chr4 114270149 114270662 -70018000 + L1MB8 LINE L1 4824 5359 -787 * 1636 234 87 23 chr4 114270649 114271204 -70017458 + L1MB8 LINE L1 5587 6176 -2 2123 105 3 35 chr4 114271317 114271631 -70017031 - AluSx SINE Alu -8 304 1 642 232 89 5 chr4 114271925 114272115 -70016547 + L1MB3 LINE L1 18 223 -6161 524 215 13 129 chr4 114272139 114272450 -70016212 + L1MB3 LINE L1 2579 2853 -3529 310 196 21 93 chr4 114272459 114272556 -70016106 + L1MC4 LINE L1 6613 6702 -1340 209 83 28 0 chr4 114272557 114272593 -70016069 + (TA)n Simple_repeat Simple_repeat 1 37 0 7138 218 38 69 chr4 114272595 114273888 -70014774 + L1MB3 LINE L1 2882 4214 -2205 4372 105 46 20 chr4 114273888 114274597 -70014065 + L1PB1 LINE L1 5419 6149 -2 7138 218 38 69 chr4 114274597 114276100 -70012562 + L1MB3 LINE L1 4214 5546 -873 1660 129 3 84 chr4 114276100 114276439 -70012223 + AluSx SINE Alu 1 314 0 7138 218 38 69 chr4 114276439 114277270 -70011392 + L1MB3 LINE L1 5546 6402 -17 214 236 0 57 chr4 114278495 114278601 -70010061 + A-rich Low_complexity Low_complexity 5 104 0 31 0 0 0 chr4 114278944 114278975 -70009687 + AT_rich Low_complexity Low_complexity 1 31 0 782 312 41 47 chr4 114279063 114279425 -70009237 - MLT1H LTR MaLR -189 360 1 407 329 40 37 chr4 114279428 114279726 -70008936 + L1 LINE L1 4655 4953 -1193 1247 274 71 54 chr4 114280250 114280728 -70007934 + MER41E LTR ERV1 27 512 0 4009 159 18 10 chr4 114281143 114281820 -70006842 - MER50 LTR ERV1 -52 682 1 415 242 181 28 chr4 114282265 114282480 -70006182 - MLT1C LTR MaLR -61 406 159 32 0 0 0 chr4 114282563 114282595 -70006067 + AT_rich Low_complexity Low_complexity 1 32 0 454 327 143 25 chr4 114283347 114283824 -70004838 - HAL1b LINE L1 -544 804 272 484 200 108 73 chr4 114284462 114284722 -70003940 - LTR41 LTR ERVL -9 764 496 542 257 7 7 chr4 114284963 114285107 -70003555 - LTR41 LTR ERVL -629 144 1 2004 135 39 33 chr4 114285144 114285506 -70003156 + THE1B LTR MaLR 1 364 0 25 0 0 0 chr4 114285864 114285889 -70002773 + AT_rich Low_complexity Low_complexity 1 25 0 475 238 41 125 chr4 114286021 114286613 -70002049 - L1MEc LINE L1 -4722 1493 997 2015 168 6 0 chr4 114286685 114287019 -70001643 - MER46B DNA MER2_type -24 212 2 739 272 158 60 chr4 114287064 114287430 -70001232 - L1MEc LINE L1 -5505 891 464 775 241 18 0 chr4 114287430 114287596 -70001066 - FAM SINE Alu -5 170 2 739 272 158 60 chr4 114287596 114287715 -70000947 - L1MEc LINE L1 -5932 464 358 218 114 0 68 chr4 114287716 114287783 -70000879 + (TC)n Simple_repeat Simple_repeat 1 62 0 463 283 109 34 chr4 114287786 114288108 -70000554 - L1MEc LINE L1 -6015 381 36 465 111 0 0 chr4 114288156 114288237 -70000425 - L1PA13 LINE L1 -5 6158 6078 1961 138 24 0 chr4 114288287 114288577 -70000085 + AluSx SINE Alu 14 310 -2 21 36 0 0 chr4 114289448 114289476 -69999186 + AT_rich Low_complexity Low_complexity 1 28 0 29 60 0 0 chr4 114289664 114289714 -69998948 + AT_rich Low_complexity Low_complexity 1 50 0 800 108 199 12 chr4 114290285 114290451 -69998211 - THE1B LTR MaLR -167 197 1 10728 113 19 6 chr4 114290451 114292010 -69996652 - THE1B-int LTR MaLR 0 1580 2 952 141 16 57 chr4 114292011 114292203 -69996459 - THE1B LTR MaLR 0 364 181 22 70 0 0 chr4 114293809 114293852 -69994810 + AT_rich Low_complexity Low_complexity 1 43 0 22 80 0 0 chr4 114294717 114294767 -69993895 + AT_rich Low_complexity Low_complexity 1 50 0 2354 87 0 0 chr4 114294889 114295198 -69993464 + AluSc SINE Alu 1 309 0 288 0 0 0 chr4 114295202 114295234 -69993428 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 237 289 91 29 chr4 114295511 114295719 -69992943 - HAL1b LINE L1 -814 534 314 4362 176 46 14 chr4 114295778 114296689 -69991973 - L1MA7 LINE L1 -97 6194 5255 545 134 54 0 chr4 114296702 114296814 -69991848 + L1MA7 LINE L1 6174 6291 0 35 24 0 0 chr4 114297439 114297481 -69991181 + AT_rich Low_complexity Low_complexity 1 42 0 38 22 0 0 chr4 114298553 114298598 -69990064 + AT_rich Low_complexity Low_complexity 1 45 0 438 116 23 70 chr4 114298599 114298685 -69989977 - FRAM SINE Alu -19 157 76 1051 224 104 44 chr4 114299393 114299505 -69989157 - MER92A LTR ERV1 -5 407 303 246 32 0 0 chr4 114299505 114299536 -69989126 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1051 224 104 44 chr4 114299536 114299807 -69988855 - MER92A LTR ERV1 -109 303 1 440 274 144 18 chr4 114300802 114301142 -69987520 - L1M4 LINE L1 -1068 5078 4696 328 186 52 0 chr4 114301152 114301249 -69987413 - L1M4 LINE L1 -3245 2901 2800 34 55 0 0 chr4 114303250 114303305 -69985357 + AT_rich Low_complexity Low_complexity 1 55 0 376 330 0 0 chr4 114303374 114303489 -69985173 - MER58A DNA MER1_type 0 119 5 2208 118 98 8 chr4 114303884 114304273 -69984389 + MSTA LTR MaLR 5 428 0 1678 139 3 41 chr4 114305359 114305653 -69983009 + LTR36 LTR ERV1 1 283 -328 * 2167 178 39 27 chr4 114305637 114306047 -69982615 + LTR36 LTR ERV1 197 611 0 751 282 63 25 chr4 114306047 114306363 -69982299 + ERVL LTR ERVL 2188 2515 -3249 22 35 0 0 chr4 114306545 114306574 -69982088 + AT_rich Low_complexity Low_complexity 1 29 0 216 67 0 0 chr4 114306751 114306781 -69981881 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1488 207 23 0 chr4 114307378 114307683 -69980979 - AluJo SINE Alu 0 312 1 30 0 0 0 chr4 114307712 114307742 -69980920 + AT_rich Low_complexity Low_complexity 1 30 0 977 255 36 53 chr4 114308061 114308130 -69980532 - MLT1E3 LTR MaLR 0 624 555 1427 162 44 44 chr4 114308130 114308426 -69980236 + AluJo SINE Alu 5 300 -2 977 255 36 53 chr4 114308426 114308658 -69980004 - MLT1E3 LTR MaLR -69 555 328 2007 165 8 3 chr4 114308700 114309063 -69979599 - L1MA3 LINE L1 -64 6241 5877 444 291 83 86 chr4 114309055 114309589 -69979073 - HAL1 LINE L1 -592 1915 1381 * 2000 97 7 7 chr4 114309589 114309888 -69978774 - L1PA13 LINE L1 0 6163 5865 444 291 83 86 chr4 114309888 114309903 -69978759 - HAL1 LINE L1 -1126 1381 1367 2202 95 3 3 chr4 114309903 114310199 -69978463 - AluSp SINE Alu -17 296 1 444 291 83 86 chr4 114310199 114310450 -69978212 - HAL1 LINE L1 -1140 1367 1116 22 0 0 0 chr4 114310689 114310711 -69977951 + AT_rich Low_complexity Low_complexity 1 22 0 5222 209 38 25 chr4 114310802 114311816 -69976846 + Cheshire DNA MER1_type 1 1000 -1420 2361 71 14 0 chr4 114311816 114312110 -69976552 + AluSg1 SINE Alu 2 299 -10 5222 209 38 25 chr4 114312110 114313175 -69975487 + Cheshire DNA MER1_type 1000 2189 -231 830 221 6 0 chr4 114313180 114313339 -69975323 - MLT1B LTR MaLR 0 467 308 2304 154 8 16 chr4 114313339 114313721 -69974941 - MER65A LTR ERV1 0 445 67 872 254 5 5 chr4 114313735 114313936 -69974726 - MLT1B LTR MaLR -188 202 2 345 206 71 24 chr4 114313942 114314068 -69974594 + Cheshire DNA MER1_type 2193 2324 -96 445 210 20 76 chr4 114314311 114314428 -69974234 + MER5A DNA MER1_type 58 178 -11 3891 129 13 9 chr4 114314581 114315214 -69973448 - MER41B LTR ERV1 0 635 1 1720 291 51 68 chr4 114315214 114316097 -69972565 - HERV16 LTR ERVL -3568 1428 561 353 317 97 55 chr4 114316556 114316724 -69971938 - LTR16B LTR ERVL 0 464 305 2072 134 0 10 chr4 114316724 114317031 -69971631 + AluSx SINE Alu 1 304 -8 353 317 97 55 chr4 114317031 114317266 -69971396 - LTR16B LTR ERVL -159 305 44 261 0 0 0 chr4 114318872 114318901 -69969761 + (TG)n Simple_repeat Simple_repeat 1 29 0 4145 246 40 37 chr4 114319121 114321561 -69967101 - L1MC2 LINE L1 -23 6601 4155 1206 261 77 5 chr4 114321559 114322119 -69966543 - L1MC2 LINE L1 -2793 3633 3034 * 9929 158 16 13 chr4 114322116 114324814 -69963848 - L1PA13 LINE L1 -21 7580 4876 4885 175 57 1 chr4 114324841 114325697 -69962965 - L1PA13 LINE L1 -6671 910 7 3823 239 109 29 chr4 114325719 114326482 -69962180 - L1MC2 LINE L1 -3379 3047 2347 779 222 95 5 chr4 114326482 114326671 -69961991 - MER6B DNA MER2_type -3 207 2 3823 239 109 29 chr4 114326671 114326963 -69961699 - L1MC2 LINE L1 -4079 2347 2080 1696 167 133 16 chr4 114326963 114327346 -69961316 - MSTA LTR MaLR 0 428 1 3823 239 109 29 chr4 114327346 114327531 -69961131 - L1MC2 LINE L1 -4346 2080 1911 219 36 0 0 chr4 114327531 114327559 -69961103 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 3823 239 109 29 chr4 114327559 114328350 -69960312 - L1MC2 LINE L1 -4515 1911 1185 652 136 61 45 chr4 114328350 114328482 -69960180 + L1PA16 LINE L1 6033 6166 0 3823 239 109 29 chr4 114328482 114329134 -69959528 - L1MC2 LINE L1 -5241 1185 6 26 0 0 0 chr4 114329199 114329225 -69959437 + AT_rich Low_complexity Low_complexity 1 26 0 5745 204 22 30 chr4 114329225 114330036 -69958626 - L1PB4 LINE L1 -6 6853 6036 2039 134 6 19 chr4 114330036 114330349 -69958313 - AluSx SINE Alu -3 309 1 5745 204 22 30 chr4 114330349 114331841 -69956821 - L1PB4 LINE L1 -823 6036 4584 4097 233 42 40 chr4 114331848 114334224 -69954438 - L1PB4 LINE L1 -3042 3807 1335 258 262 0 0 chr4 114334209 114334270 -69954392 - L1PB4 LINE L1 -5286 1563 1503 * 1446 140 0 0 chr4 114334818 114335039 -69953623 - L1P LINE L1 -1046 5100 4880 715 170 210 12 chr4 114335324 114335515 -69953147 + THE1C LTR MaLR 1 228 -170 360 286 25 50 chr4 114335536 114335697 -69952965 - MLT1H LTR MaLR -392 157 1 2151 78 7 10 chr4 114336433 114336726 -69951936 + AluY SINE Alu 19 310 -1 212 0 36 0 chr4 114336755 114336783 -69951879 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 980 171 0 6 chr4 114336916 114337074 -69951588 + FRAM SINE Alu 1 156 -20 1058 171 6 163 chr4 114337287 114337637 -69951025 + AluJo SINE Alu 1 295 -7 31 82 0 0 chr4 114339923 114339996 -69948666 + AT_rich Low_complexity Low_complexity 1 73 0 1100 248 45 81 chr4 114340044 114340528 -69948134 - MLT1C LTR MaLR 0 467 1 2194 107 0 0 chr4 114340673 114340971 -69947691 + AluSc SINE Alu 3 300 -9 181 222 183 48 chr4 114340977 114341103 -69947559 - MIR SINE MIR -18 244 102 273 355 18 53 chr4 114341142 114341311 -69947351 - MER5A DNA MER1_type 0 189 27 675 65 0 0 chr4 114341875 114341968 -69946694 + (GGAA)n Simple_repeat Simple_repeat 3 95 0 21 57 0 0 chr4 114342058 114342093 -69946569 + AT_rich Low_complexity Low_complexity 1 35 0 204 331 123 18 chr4 114342400 114342563 -69946099 + MIR SINE MIR 33 212 -50 22 0 0 0 chr4 114342913 114342935 -69945727 + AT_rich Low_complexity Low_complexity 1 22 0 1758 196 40 11 chr4 114343061 114343414 -69945248 + MLT1A1 LTR MaLR 1 363 -2 3981 192 53 10 chr4 114343416 114344225 -69944437 + MLT1A1-int LTR MaLR 1 844 -891 821 259 13 63 chr4 114344285 114344602 -69944060 - MLT-int LTR MaLR -546 1189 889 740 330 116 3 chr4 114346189 114346544 -69942118 + L1ME3A LINE L1 5701 6095 -75 4827 144 17 37 chr4 114346695 114347758 -69940904 + L1PA13 LINE L1 5118 6163 0 2262 87 6 3 chr4 114349061 114349383 -69939279 + L1PA10 LINE L1 5837 6159 -9 21 0 0 0 chr4 114349383 114349404 -69939258 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 114351272 114351296 -69937366 + AT_rich Low_complexity Low_complexity 1 24 0 251 361 0 0 chr4 114351605 114351677 -69936985 + L2 LINE L2 3234 3305 -8 21 82 0 0 chr4 114352009 114352058 -69936604 + AT_rich Low_complexity Low_complexity 1 49 0 711 199 96 66 chr4 114353042 114353208 -69935454 - MER21B LTR ERV1 -347 584 330 1898 141 0 0 chr4 114353315 114353598 -69935064 + AluSx SINE Alu 1 283 -29 453 36 0 0 chr4 114353599 114353654 -69935008 + (CATA)n Simple_repeat Simple_repeat 3 57 0 1510 260 84 17 chr4 114354264 114354802 -69933860 - L1MC4 LINE L1 -202 7840 7267 723 343 102 35 chr4 114354939 114355593 -69933069 - L2 LINE L2 -1800 1514 817 1199 242 21 50 chr4 114356208 114356584 -69932078 - MLT1A1 LTR MaLR 0 365 1 245 255 0 0 chr4 114356799 114356850 -69931812 - L1ME3A LINE L1 -29 6141 6091 256 323 0 0 chr4 114357087 114357152 -69931510 + L1MC/D LINE L1 5600 5664 -2144 25 83 0 0 chr4 114357153 114357213 -69931449 + AT_rich Low_complexity Low_complexity 1 60 0 23 68 0 0 chr4 114357820 114357864 -69930798 + AT_rich Low_complexity Low_complexity 1 44 0 2335 235 61 4 chr4 114357870 114358394 -69930268 - MER68 LTR ERV1 0 562 9 227 141 62 62 chr4 114358624 114358688 -69929974 - MLT1J2 LTR MaLR -29 421 358 300 183 107 38 chr4 114358785 114358916 -69929746 - MLT1I LTR MaLR -232 183 101 254 356 40 27 chr4 114359588 114359737 -69928925 + MIR SINE MIR 112 262 0 505 136 0 18 chr4 114361998 114362108 -69926554 + (CA)n Simple_repeat Simple_repeat 2 109 0 7888 16 1 1 chr4 114362156 114363745 -69924917 - L1HS LINE L1 0 6155 4567 7643 28 0 0 chr4 114363743 114364651 -69924011 + L1HS LINE L1 3653 4560 -1586 * 1995 107 11 0 chr4 114365151 114365421 -69923241 + AluSx SINE Alu 30 302 -10 1339 177 13 119 chr4 114365442 114365837 -69922825 - L1MC2 LINE L1 -188 6156 5804 312 298 0 0 chr4 114365832 114365916 -69922746 - L1MA10 LINE L1 -72 6262 6179 * 2114 117 0 0 chr4 114366023 114366305 -69922357 - AluSq SINE Alu -29 284 3 1753 248 27 28 chr4 114366361 114366963 -69921699 - L1M4 LINE L1 -1198 4948 4348 592 229 0 19 chr4 114366963 114367120 -69921542 + L1MC1 LINE L1 3893 4046 -2100 1728 222 12 6 chr4 114367125 114367463 -69921199 + MLT1A1 LTR MaLR 5 344 -21 3959 239 39 15 chr4 114367504 114368933 -69919729 + L1MC1 LINE L1 4040 5502 -751 1025 204 43 13 chr4 114368933 114369163 -69919499 + L1MC1 LINE L1 6088 6324 -9 3172 222 103 32 chr4 114369170 114370241 -69918421 - L1M4 LINE L1 -1784 4362 3216 31 58 0 0 chr4 114370522 114370574 -69918088 + AT_rich Low_complexity Low_complexity 1 52 0 559 347 25 0 chr4 114370661 114370906 -69917756 - LTR16C LTR ERVL -11 480 230 868 111 32 0 chr4 114371492 114371618 -69917044 + AluSq/x SINE Alu 5 134 -178 1646 180 7 0 chr4 114371624 114371919 -69916743 + AluSx SINE Alu 6 302 -10 264 294 29 10 chr4 114371953 114372055 -69916607 - HERVL LTR ERVL -1701 3953 3850 1626 207 31 57 chr4 114372166 114372591 -69916071 - MLT2D LTR ERVL 0 414 1 344 355 39 17 chr4 114372768 114372999 -69915663 - HERVL LTR ERVL -1959 3526 3291 623 373 58 22 chr4 114373183 114373628 -69915034 - HERVL LTR ERVL -1910 3086 2626 940 307 34 20 chr4 114374001 114374356 -69914306 - HERVL LTR ERVL -3389 2375 2016 287 391 13 36 chr4 114374502 114374639 -69914023 - HERVL LTR ERVL -3863 1791 1652 192 40 0 0 chr4 114374639 114374664 -69913998 + (CA)n Simple_repeat Simple_repeat 2 26 0 287 391 13 36 chr4 114374664 114374833 -69913829 - HERVL LTR ERVL -4002 1652 1492 623 321 78 19 chr4 114375898 114376166 -69912496 - LTR16C LTR ERVL -4 487 204 22 56 0 0 chr4 114376528 114376564 -69912098 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr4 114376577 114376603 -69912059 + AT_rich Low_complexity Low_complexity 1 26 0 1381 218 8 42 chr4 114377384 114377761 -69910901 + MLT1A1 LTR MaLR 1 364 -1 1140 202 88 19 chr4 114377768 114378084 -69910578 + MLT1A1 LTR MaLR 5 349 -16 1018 257 97 24 chr4 114379172 114379553 -69909109 - MLT1C LTR MaLR 0 467 59 376 194 0 15 chr4 114379707 114379774 -69908888 - MER50 LTR ERV1 -211 523 458 2102 110 10 0 chr4 114380109 114380400 -69908262 - AluSp SINE Alu -19 294 1 521 182 309 12 chr4 114380565 114380694 -69907968 + L1MC3 LINE L1 6691 6780 -1005 267 31 0 0 chr4 114380694 114380726 -69907936 + (CA)n Simple_repeat Simple_repeat 2 33 0 521 182 309 12 chr4 114380726 114380761 -69907901 + L1MC3 LINE L1 6780 6904 -881 3680 167 26 18 chr4 114380761 114381480 -69907182 - MER50 LTR ERV1 -9 725 1 464 171 164 7 chr4 114381486 114381638 -69907024 + L1MC3 LINE L1 6922 7097 -688 241 279 51 25 chr4 114381638 114381717 -69906945 + MLT1F1 LTR MaLR 35 115 -452 1816 218 74 20 chr4 114381720 114382262 -69906400 + L1MC3 LINE L1 7214 7784 -1 1843 157 0 3 chr4 114382616 114382909 -69905753 - AluSx SINE Alu -20 292 1 469 169 0 24 chr4 114383696 114383779 -69904883 - Tigger5 DNA MER2_type -1 2322 2242 4041 176 5 5 chr4 114383779 114384525 -69904137 + L1PA15 LINE L1 5418 6163 -2 504 103 0 46 chr4 114384629 114384716 -69903946 - Tigger5 DNA MER2_type -74 2249 2167 223 344 98 31 chr4 114384847 114385010 -69903652 + MIR3 SINE MIR 30 203 -5 28 61 0 0 chr4 114385212 114385261 -69903401 + AT_rich Low_complexity Low_complexity 1 49 0 210 71 0 0 chr4 114385483 114385511 -69903151 + (CA)n Simple_repeat Simple_repeat 1 28 0 2338 262 90 25 chr4 114386126 114387584 -69901078 + L1M3c LINE L1 795 2198 -4184 1526 154 76 62 chr4 114387604 114387974 -69900688 - THE1C LTR MaLR 0 375 1 491 244 35 44 chr4 114387975 114388204 -69900458 + L1M3c LINE L1 2474 2700 -3682 2168 195 54 159 chr4 114388212 114389503 -69899159 + L1M3c LINE L1 3089 4244 -2138 1013 224 55 103 chr4 114389831 114390024 -69898638 + MLT2C2 LTR ERVL 1 202 -262 2357 47 13 0 chr4 114390024 114390325 -69898337 - L1PA4 LINE L1 -3 6152 5848 1013 224 55 103 chr4 114390325 114390618 -69898044 + MLT2C2 LTR ERVL 202 464 0 585 284 57 132 chr4 114393245 114394529 -69894133 - L2 LINE L2 -124 3189 2004 185 163 47 0 chr4 114394629 114394672 -69893990 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 23 0 0 0 chr4 114394679 114394702 -69893960 + AT_rich Low_complexity Low_complexity 1 23 0 295 340 53 7 chr4 114394815 114394965 -69893697 - MIR SINE MIR -86 176 20 21 0 0 0 chr4 114396436 114396457 -69892205 + AT_rich Low_complexity Low_complexity 1 21 0 2665 142 21 6 chr4 114396457 114396943 -69891719 - L1MA3 LINE L1 0 6305 5813 16091 174 43 18 chr4 114396960 114397630 -69891032 - L1M1 LINE L1 -4430 3135 2483 1984 108 54 0 chr4 114397630 114397907 -69890755 - AluSg SINE Alu -6 304 13 16091 174 43 18 chr4 114397907 114400280 -69888382 - L1M1 LINE L1 -5082 2483 15 23 54 0 0 chr4 114400571 114400608 -69888054 + AT_rich Low_complexity Low_complexity 1 37 0 27 49 0 0 chr4 114400624 114400665 -69887997 + AT_rich Low_complexity Low_complexity 1 41 0 192 40 0 0 chr4 114400849 114400874 -69887788 + (TA)n Simple_repeat Simple_repeat 1 25 0 2032 313 55 28 chr4 114400876 114401730 -69886932 - HERVL40 LTR ERVL -1342 4188 3312 202 222 0 0 chr4 114401946 114401991 -69886671 + A-rich Low_complexity Low_complexity 4 48 0 21 36 0 0 chr4 114402761 114402789 -69885873 + AT_rich Low_complexity Low_complexity 1 28 0 2000 98 4 11 chr4 114402821 114403098 -69885564 + THE1C LTR MaLR 101 375 0 305 288 133 16 chr4 114405649 114405972 -69882690 + L1M4 LINE L1 3577 3937 -2209 230 279 23 0 chr4 114406035 114406121 -69882541 - L1 LINE L1 -1326 4820 4733 913 181 66 13 chr4 114406233 114406459 -69882203 + L1MA8 LINE L1 6053 6290 -1 207 100 0 0 chr4 114406935 114406965 -69881697 + (TTTTC)n Simple_repeat Simple_repeat 5 34 0 237 325 16 57 chr4 114407261 114407384 -69881278 - L2 LINE L2 -14 3299 3182 1512 236 35 29 chr4 114408022 114408422 -69880240 - L1PA16 LINE L1 -2 6164 5766 27 29 0 0 chr4 114408836 114408870 -69879792 + AT_rich Low_complexity Low_complexity 1 34 0 196 358 11 11 chr4 114409551 114409646 -69879016 + MIR3 SINE MIR 111 205 -3 22 0 0 0 chr4 114410041 114410063 -69878599 + AT_rich Low_complexity Low_complexity 1 22 0 41173 48 3 1 chr4 114410069 114415988 -69872674 - L1PA4 LINE L1 -6 6149 221 5834 29 0 0 chr4 114416088 114416771 -69871891 + L1PA3 LINE L1 5473 6155 0 2984 65 0 5 chr4 114416773 114417160 -69871502 + L1PA7 LINE L1 5769 6153 -1 353 324 39 0 chr4 114417251 114417433 -69871229 + L1M4 LINE L1 3510 3698 -2448 239 235 20 0 chr4 114417433 114417484 -69871178 + Tigger2 DNA MER2_type 1 52 -2666 9434 78 2 0 chr4 114419701 114420934 -69867728 - L1P LINE L1 -4886 1260 26 23 101 0 0 chr4 114421462 114421541 -69867121 + AT_rich Low_complexity Low_complexity 1 79 0 882 213 9 69 chr4 114421589 114421805 -69866857 - MER20 DNA MER1_type -16 203 1 21 57 0 0 chr4 114421893 114421928 -69866734 + AT_rich Low_complexity Low_complexity 1 35 0 5050 214 50 19 chr4 114421930 114422072 -69866590 + ERVL LTR ERVL 923 1059 -4705 1940 151 0 0 chr4 114422072 114422387 -69866275 + AluSx SINE Alu 1 315 0 5050 214 50 19 chr4 114422387 114423337 -69865325 + ERVL LTR ERVL 1059 2050 -3714 5126 113 111 34 chr4 114423339 114424426 -69864236 + MER11A LTR ERVK 1 1266 0 2462 185 16 7 chr4 114424436 114424874 -69863788 + ERVL LTR ERVL 2057 2498 -3266 1109 211 129 11 chr4 114424874 114425154 -69863508 - MLT2B3 LTR ERVL -241 313 1 867 114 0 8 chr4 114425419 114425555 -69863107 + L1M1 LINE L1 5526 5651 -520 2770 123 12 67 chr4 114425555 114426034 -69862628 + MLT2A2 LTR ERVL 1 453 0 14051 96 10 7 chr4 114426034 114427994 -69860668 + HERVL-A2 LTR ERVL 1 1967 -3687 6740 96 29 3 chr4 114427991 114428979 -69859683 + HERVL LTR ERVL 4354 5367 -287 * 22 35 0 0 chr4 114430245 114430274 -69858388 + AT_rich Low_complexity Low_complexity 1 29 0 27 62 0 0 chr4 114430967 114431015 -69857647 + AT_rich Low_complexity Low_complexity 1 48 0 246 160 0 0 chr4 114431377 114431427 -69857235 + GA-rich Low_complexity Low_complexity 3 52 0 22 0 0 0 chr4 114431458 114431480 -69857182 + AT_rich Low_complexity Low_complexity 1 22 0 308 266 0 0 chr4 114431500 114431564 -69857098 - MER91A DNA MER1_type -36 160 97 27 49 0 0 chr4 114434794 114434835 -69853827 + AT_rich Low_complexity Low_complexity 1 41 0 21 71 0 0 chr4 114437864 114437906 -69850756 + AT_rich Low_complexity Low_complexity 1 42 0 27 0 0 0 chr4 114438880 114438907 -69849755 + AT_rich Low_complexity Low_complexity 1 27 0 2091 131 76 15 chr4 114439619 114439962 -69848700 + THE1B LTR MaLR 1 364 0 10761 121 10 0 chr4 114439962 114441526 -69847136 + THE1B-int LTR MaLR 1 1580 0 1872 162 85 15 chr4 114441526 114441866 -69846796 + THE1B LTR MaLR 1 364 0 2099 132 3 3 chr4 114441931 114442234 -69846428 - AluSc SINE Alu -6 303 1 1040 166 5 0 chr4 114444179 114444372 -69844290 + L1MA3 LINE L1 6112 6305 0 191 339 0 0 chr4 114444912 114444974 -69843688 + L2 LINE L2 2480 2541 -773 878 292 49 19 chr4 114444976 114445410 -69843252 + L1MCa LINE L1 3 424 -5621 374 277 22 15 chr4 114445603 114445740 -69842922 + L1MCa LINE L1 569 706 -5339 386 356 116 0 chr4 114445743 114446007 -69842655 - L2 LINE L2 -253 3060 2773 194 395 12 0 chr4 114446011 114446097 -69842565 - L2 LINE L2 -664 2650 2564 2905 150 2 48 chr4 114447565 114447995 -69840667 - LOR1a LTR ERV1 0 497 94 2224 108 3 0 chr4 114447995 114448292 -69840370 + AluY SINE Alu 1 298 -13 2905 150 2 48 chr4 114448292 114448382 -69840280 - LOR1a LTR ERV1 -403 94 1 1863 161 73 15 chr4 114449007 114449349 -69839313 - THE1B LTR MaLR 0 364 3 10738 104 6 40 chr4 114449351 114450984 -69837678 - THE1B-int LTR MaLR 0 1580 3 1919 139 71 40 chr4 114450986 114451339 -69837323 - THE1B LTR MaLR 0 364 1 1301 229 165 9 chr4 114451380 114451817 -69836845 + MLT1D LTR MaLR 1 505 0 22 35 0 0 chr4 114453038 114453067 -69835595 + AT_rich Low_complexity Low_complexity 1 29 0 1637 273 35 43 chr4 114453843 114454585 -69834077 + L1ME1 LINE L1 5450 6182 -2 304 356 0 0 chr4 114454601 114454702 -69833960 - HAL1 LINE L1 -935 1572 1472 238 302 0 0 chr4 114455088 114455151 -69833511 - L1MEd LINE L1 -5459 660 598 22 0 0 0 chr4 114456048 114456070 -69832592 + AT_rich Low_complexity Low_complexity 1 22 0 30 27 0 0 chr4 114456872 114456909 -69831753 + AT_rich Low_complexity Low_complexity 1 37 0 1005 278 57 9 chr4 114456997 114457346 -69831316 + L1ME1 LINE L1 5797 6162 -4 636 254 0 0 chr4 114458713 114458851 -69829811 - FAM SINE Alu -42 143 6 389 141 0 0 chr4 114459653 114459717 -69828945 - L1P5 LINE L1 -379 5772 5709 1365 126 5 0 chr4 114459717 114459954 -69828708 + L1PB1 LINE L1 5927 6166 0 1370 187 45 4 chr4 114461399 114461667 -69826995 - AluJb SINE Alu -31 281 3 414 0 0 0 chr4 114461675 114461721 -69826941 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 311 18 9 0 chr4 114461721 114461766 -69826896 - AluJb SINE Alu -183 119 84 24 32 0 0 chr4 114463217 114463248 -69825414 + AT_rich Low_complexity Low_complexity 1 31 0 374 306 150 19 chr4 114463763 114464294 -69824368 - L1ME LINE L1 -359 5803 5198 246 268 27 9 chr4 114464846 114464958 -69823704 - L1ME LINE L1 -1617 4529 4416 186 341 49 12 chr4 114466104 114466186 -69822476 - MIR SINE MIR -169 93 9 182 167 0 24 chr4 114466193 114466235 -69822427 + (TA)n Simple_repeat Simple_repeat 1 41 0 1927 182 11 17 chr4 114466618 114466975 -69821687 - MLT1A1 LTR MaLR 0 365 11 1388 239 47 24 chr4 114467057 114467438 -69821224 - MLT1B LTR MaLR 0 390 1 1633 209 21 13 chr4 114467565 114467925 -69820737 + MLT1A1 LTR MaLR 1 456 -1 1037 222 31 42 chr4 114468112 114468222 -69820440 + AluJo SINE Alu 11 121 -191 2837 3 0 0 chr4 114468222 114468533 -69820129 - AluYa5 SINE Alu 0 311 1 1037 222 31 42 chr4 114468533 114468683 -69819979 + AluJo SINE Alu 121 268 -44 22 0 0 0 chr4 114468705 114468727 -69819935 + AT_rich Low_complexity Low_complexity 1 22 0 237 163 0 20 chr4 114470566 114470615 -69818047 + GA-rich Low_complexity Low_complexity 1 48 0 22 35 0 0 chr4 114471800 114471829 -69816833 + AT_rich Low_complexity Low_complexity 1 29 0 1767 100 29 0 chr4 114471912 114472153 -69816509 + AluSg SINE Alu 47 294 -16 351 303 188 45 chr4 114472268 114472730 -69815932 + L2 LINE L2 2212 2739 -575 208 230 40 0 chr4 114473201 114473275 -69815387 + (TA)n Simple_repeat Simple_repeat 2 78 0 250 111 74 19 chr4 114473275 114473329 -69815333 - MER95 LTR ERV -1 430 374 1611 190 49 37 chr4 114473343 114473748 -69814914 - MER95 LTR ERV -17 414 5 543 115 35 0 chr4 114473775 114473862 -69814800 - LTR48 LTR ERV1 -20 767 678 587 184 66 0 chr4 114473874 114474010 -69814652 + L1 LINE L1 5095 5239 -907 5226 233 62 38 chr4 114474061 114477225 -69811437 - L1MA7 LINE L1 -2 6289 2993 1978 149 0 0 chr4 114477411 114477712 -69810950 - AluSx SINE Alu -9 303 3 1242 211 69 0 chr4 114477828 114478088 -69810574 - AluJb SINE Alu -16 296 19 587 291 89 21 chr4 114478166 114478592 -69810070 - Charlie7 DNA MER1_type -276 2336 1882 274 283 87 40 chr4 114479036 114479209 -69809453 - Charlie7 DNA MER1_type -856 1756 1576 288 307 0 44 chr4 114479258 114479372 -69809290 - Charlie7 DNA MER1_type -1230 1382 1274 880 250 75 11 chr4 114479481 114479829 -69808833 - LTR37A LTR ERV1 -18 408 39 728 306 36 16 chr4 114479974 114480048 -69808614 - L1ME LINE L1 -406 5764 5693 2157 137 108 11 chr4 114480048 114480500 -69808162 + LTR54B LTR ERV1 1 496 -2 728 306 36 16 chr4 114480500 114480732 -69807930 - L1ME LINE L1 -477 5693 5452 227 328 66 0 chr4 114480866 114480988 -69807674 - L1ME LINE L1 -1984 4162 4033 521 160 0 21 chr4 114481685 114481779 -69806883 - AluY SINE Alu -4 307 216 1026 175 0 0 chr4 114481782 114481948 -69806714 - AluSx SINE Alu -133 179 14 27 49 0 0 chr4 114482135 114482176 -69806486 + AT_rich Low_complexity Low_complexity 1 41 0 23 54 0 0 chr4 114483980 114484017 -69804645 + AT_rich Low_complexity Low_complexity 1 37 0 21 71 0 0 chr4 114485075 114485117 -69803545 + AT_rich Low_complexity Low_complexity 1 42 0 211 337 64 37 chr4 114485311 114485498 -69803164 - L2 LINE L2 -2931 383 192 1459 245 76 28 chr4 114486170 114486664 -69801998 - L1MC/D LINE L1 -661 5698 5156 2108 120 10 0 chr4 114486664 114486964 -69801698 - AluSx SINE Alu -9 303 1 1459 245 76 28 chr4 114486964 114487160 -69801502 - L1MC/D LINE L1 -1203 5156 4971 411 205 13 103 chr4 114487159 114487315 -69801347 - L1M4 LINE L1 -1091 5055 4914 * 2104 79 9 60 chr4 114487355 114487672 -69800990 + AluY SINE Alu 1 301 -10 22 35 0 0 chr4 114487894 114487923 -69800739 + AT_rich Low_complexity Low_complexity 1 29 0 251 360 86 60 chr4 114488381 114488717 -69799945 + L2 LINE L2 231 575 -2739 324 372 53 29 chr4 114489219 114489560 -69799102 + L2 LINE L2 1065 1413 -1901 501 291 35 26 chr4 114489767 114489994 -69798668 + L1MC4 LINE L1 7630 7858 -184 1948 174 18 85 chr4 114490415 114490851 -69797811 - MLT2D LTR ERVL -7 407 1 23 33 0 0 chr4 114492430 114492460 -69796202 + AT_rich Low_complexity Low_complexity 1 30 0 2368 83 0 0 chr4 114493018 114493319 -69795343 - AluY SINE Alu -10 301 1 249 83 0 0 chr4 114493990 114494026 -69794636 + (TG)n Simple_repeat Simple_repeat 2 37 0 429 212 10 30 chr4 114495705 114495804 -69792858 + LTR18B LTR ERVL 518 614 0 1531 167 7 50 chr4 114495810 114496109 -69792553 + HERVL18 LTR ERVL 1 286 -5761 1749 205 12 3 chr4 114496112 114496444 -69792218 + HERVL18 LTR ERVL 634 968 -5079 1181 219 0 14 chr4 114496435 114496654 -69792008 + HERVL18 LTR ERVL 1399 1614 -4433 * 1219 140 17 64 chr4 114496686 114496922 -69791740 + HERVL18 LTR ERVL 2119 2343 -3704 5143 171 7 2 chr4 114496978 114497830 -69790832 + HERVL18 LTR ERVL 2724 3579 -2468 9672 175 23 7 chr4 114497832 114499460 -69789202 + HERVL18 LTR ERVL 4394 6047 0 1910 168 21 72 chr4 114499461 114499837 -69788825 + LTR18A LTR ERVL 1 357 0 1170 273 96 5 chr4 114499910 114500306 -69788356 - L1ME2 LINE L1 -199 5965 5534 1651 153 16 36 chr4 114501041 114501348 -69787314 - AluJb SINE Alu -11 301 1 2045 139 12 6 chr4 114501522 114501860 -69786802 - L1PA13 LINE L1 -6 6157 5818 642 170 67 7 chr4 114502206 114502341 -69786321 - L1MB1 LINE L1 -25 6164 6022 338 175 0 0 chr4 114502341 114502404 -69786258 + L1MA10 LINE L1 6269 6331 -3 313 262 97 0 chr4 114502790 114502893 -69785769 - MIR SINE MIR -38 224 112 269 294 24 0 chr4 114502932 114503017 -69785645 + MIR SINE MIR 54 140 -122 21 0 0 0 chr4 114504060 114504081 -69784581 + AT_rich Low_complexity Low_complexity 1 21 0 2193 109 0 19 chr4 114504863 114505175 -69783487 - AluSg SINE Alu -4 306 1 1311 194 62 42 chr4 114505793 114506082 -69782580 + AluJo SINE Alu 1 295 -17 2296 104 23 3 chr4 114507299 114507645 -69781017 - L1PB1 LINE L1 -5 6146 5794 309 51 0 0 chr4 114507645 114507684 -69780978 + (TG)n Simple_repeat Simple_repeat 2 40 0 180 0 0 0 chr4 114507683 114507703 -69780959 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 2961 165 14 10 chr4 114507705 114508696 -69779966 - L1PB1 LINE L1 -451 5700 4706 650 322 49 10 chr4 114508959 114509164 -69779498 - MIR SINE MIR -30 232 20 23 0 0 0 chr4 114509643 114509666 -69778996 + AT_rich Low_complexity Low_complexity 1 23 0 249 146 0 0 chr4 114509866 114509914 -69778748 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 380 260 0 0 chr4 114510347 114510447 -69778215 + L1MA10 LINE L1 6234 6333 -1 1785 174 33 24 chr4 114511207 114511540 -69777122 + MER2 DNA MER2_type 1 336 -9 1742 140 23 37 chr4 114511825 114512125 -69776537 - AluSx SINE Alu -16 296 1 1436 191 17 7 chr4 114512154 114512447 -69776215 + MER47A DNA MER2_type 6 301 -65 1884 92 0 0 chr4 114512556 114512817 -69775845 + HERVL-A2 LTR ERVL 5394 5654 0 2651 153 27 0 chr4 114512819 114513205 -69775457 + MLT2A2 LTR ERVL 3 404 -49 201 74 0 0 chr4 114513205 114513232 -69775430 + (TG)n Simple_repeat Simple_repeat 2 28 0 2651 153 27 0 chr4 114513232 114513284 -69775378 + MLT2A2 LTR ERVL 404 453 0 2813 166 20 4 chr4 114513284 114513791 -69774871 + L1PA16 LINE L1 5647 6161 -5 6054 211 22 2 chr4 114513882 114515348 -69773314 - L1P4 LINE L1 -695 5471 3985 28 29 0 0 chr4 114515475 114515510 -69773152 + AT_rich Low_complexity Low_complexity 1 35 0 24 85 0 0 chr4 114515810 114515869 -69772793 + AT_rich Low_complexity Low_complexity 1 59 0 257 196 0 152 chr4 114516482 114516574 -69772088 + MIR SINE MIR 38 115 -147 4848 172 41 47 chr4 114516765 114518524 -69770138 - L1MA6 LINE L1 -5 6295 4555 302 109 0 0 chr4 114518528 114518574 -69770088 - L1MA6 LINE L1 -2416 3730 3685 1228 226 10 25 chr4 114518599 114518913 -69769749 - L1MA6 LINE L1 -2440 3706 3398 1379 181 58 22 chr4 114519162 114519438 -69769224 + AluJb SINE Alu 3 288 -24 219 69 0 0 chr4 114519936 114519965 -69768697 + (A)n Simple_repeat Simple_repeat 1 29 0 4555 213 9 6 chr4 114520654 114521510 -69767152 + L1PA13 LINE L1 1 859 -5928 18080 194 29 14 chr4 114521573 114527186 -69761476 + L1PA13 LINE L1 1081 6798 -16 2229 87 7 3 chr4 114527651 114527950 -69760712 - AluY SINE Alu -11 300 1 1028 327 58 0 chr4 114528721 114529115 -69759547 - MLT1E LTR MaLR -58 535 119 622 235 7 33 chr4 114529138 114529291 -69759371 - MLT1E LTR MaLR -444 149 1 1245 249 19 25 chr4 114529372 114529733 -69758929 - MER63B DNA MER1_type -76 360 2 22 0 0 0 chr4 114529790 114529812 -69758850 + AT_rich Low_complexity Low_complexity 1 22 0 2065 95 7 14 chr4 114529862 114530147 -69758515 - AluSg SINE Alu -7 303 21 334 333 0 0 chr4 114531126 114531219 -69757443 + MLT1J1 LTR MaLR 214 306 -140 585 281 66 55 chr4 114531510 114531766 -69756896 + MER21B LTR ERV1 379 637 -226 577 221 55 18 chr4 114532281 114532444 -69756218 + L1ME1 LINE L1 5706 5874 -292 855 242 6 0 chr4 114532445 114532627 -69756035 - MER72 LTR ERV1 0 722 540 532 269 37 88 chr4 114532719 114533013 -69755649 - L1ME2 LINE L1 -9 6155 5877 1972 241 41 47 chr4 114533015 114533570 -69755092 + MER72 LTR ERV1 1 552 -170 23 0 0 0 chr4 114534364 114534387 -69754275 + AT_rich Low_complexity Low_complexity 1 23 0 225 65 0 0 chr4 114534431 114534462 -69754200 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 238 204 20 0 chr4 114534508 114534557 -69754105 + LTR33A LTR ERVL 474 523 0 25 0 0 0 chr4 114534809 114534834 -69753828 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 114535367 114535389 -69753273 + AT_rich Low_complexity Low_complexity 1 22 0 374 291 85 20 chr4 114536446 114536730 -69751932 - L1M4c LINE L1 -4862 1566 1258 2124 188 25 17 chr4 114536799 114537207 -69751455 + Tigger2a DNA MER2_type 17 427 -7 758 287 74 12 chr4 114537326 114537664 -69750998 + L1M4 LINE L1 3809 4167 -1979 360 205 24 36 chr4 114537828 114537911 -69750751 + Tigger6 DNA MER2_type 1 82 -1001 235 277 0 15 chr4 114537924 114537989 -69750673 + (TA)n Simple_repeat Simple_repeat 1 64 0 241 266 0 43 chr4 114537996 114538090 -69750572 - L1MC4 LINE L1 -1339 6703 6614 191 125 25 0 chr4 114538102 114538142 -69750520 + (TA)n Simple_repeat Simple_repeat 2 42 0 988 171 5 66 chr4 114538145 114538356 -69750306 + Tigger6 DNA MER2_type 161 358 -1239 414 204 0 0 chr4 114538367 114538455 -69750207 + Tigger6 DNA MER2_type 1305 1392 -205 10310 154 11 29 chr4 114538457 114540548 -69748114 - L1PA11 LINE L1 -528 5603 3550 2804 122 77 39 chr4 114540548 114541065 -69747597 + L1PA11 LINE L1 5629 6166 -8 316 234 31 0 chr4 114541310 114541374 -69747288 + MER2 DNA MER2_type 39 104 -241 601 247 115 41 chr4 114541417 114541660 -69747002 + MER2 DNA MER2_type 85 345 0 770 248 6 17 chr4 114541901 114542230 -69746432 + MLT1B LTR MaLR 1 390 0 1151 261 90 38 chr4 114542234 114542998 -69745664 + L1M4 LINE L1 4450 5253 -893 184 343 102 18 chr4 114543584 114543750 -69744912 + L2 LINE L2 1782 1961 -1353 260 218 0 13 chr4 114544270 114544348 -69744314 + CT-rich Low_complexity Low_complexity 4 80 0 1007 203 78 37 chr4 114544552 114544907 -69743755 - MSTC LTR MaLR 0 428 19 36 97 0 0 chr4 114546008 114546121 -69742541 + AT_rich Low_complexity Low_complexity 1 113 0 47 78 0 0 chr4 114546164 114546267 -69742395 + AT_rich Low_complexity Low_complexity 1 103 0 617 136 0 0 chr4 114547214 114547302 -69741360 + LTR59 LTR ERV1 1 88 -509 1088 145 136 25 chr4 114547546 114547892 -69740770 + LTR59 LTR ERV1 162 587 -10 7611 30 0 0 chr4 114548282 114549184 -69739478 - L1PA3 LINE L1 0 6155 5254 7825 208 21 11 chr4 114550617 114552252 -69736410 + MLT1B-int LTR MaLR 1 1651 0 1721 178 98 28 chr4 114552252 114552652 -69736010 + MSTA LTR MaLR 1 428 0 1963 122 4 0 chr4 114553623 114553902 -69734760 + AluSp SINE Alu 3 282 -31 423 0 0 0 chr4 114553905 114553952 -69734710 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 310 219 0 0 chr4 114554111 114554175 -69734487 + L1MC4 LINE L1 6640 6703 -1339 * 312 304 0 22 chr4 114554155 114554247 -69734415 - L1MC4 LINE L1 -1339 6703 6614 227 156 0 0 chr4 114554263 114554308 -69734354 - LTR66 LTR ERVL -171 439 395 293 211 58 0 chr4 114554308 114554412 -69734250 + (TA)n Simple_repeat Simple_repeat 1 110 0 764 257 71 51 chr4 114555150 114555653 -69733009 - MER39 LTR ERV1 0 649 1 280 362 39 29 chr4 114555697 114555904 -69732758 - MIR SINE MIR -26 236 28 7440 118 4 6 chr4 114557113 114558238 -69730424 - L1PA8 LINE L1 -1055 5091 3970 6823 70 2 1 chr4 114558238 114559318 -69729344 + L1PA8 LINE L1 5091 6171 -1 197 83 28 0 chr4 114559766 114559802 -69728860 + (TA)n Simple_repeat Simple_repeat 1 37 0 21 57 0 0 chr4 114561453 114561488 -69727174 + AT_rich Low_complexity Low_complexity 1 35 0 228 304 14 0 chr4 114561634 114561703 -69726959 - MIR3 SINE MIR -37 171 102 22 0 0 0 chr4 114562668 114562690 -69725972 + AT_rich Low_complexity Low_complexity 1 22 0 918 216 10 10 chr4 114562697 114562891 -69725771 + MLT1A1 LTR MaLR 172 365 0 2862 210 51 25 chr4 114562892 114563577 -69725085 + MLT1A1-int LTR MaLR 2 704 -1031 1008 174 0 0 chr4 114563594 114563749 -69724913 + MLT1A1 LTR MaLR 207 361 -4 243 268 179 17 chr4 114563752 114563931 -69724731 - L1M4 LINE L1 -2049 4097 3890 980 216 23 14 chr4 114563955 114564173 -69724489 - L1MC1 LINE L1 -9 6324 6105 204 299 222 34 chr4 114564236 114564353 -69724309 - MIR SINE MIR -123 139 1 244 298 103 10 chr4 114564844 114564998 -69723664 - MIR SINE MIR -63 145 23 40 49 0 0 chr4 114566094 114566155 -69722507 + AT_rich Low_complexity Low_complexity 1 61 0 487 29 29 0 chr4 114567226 114567295 -69721367 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 1902 172 44 35 chr4 114567815 114568364 -69720298 + MLT2A2 LTR ERVL 1 554 0 21 0 0 0 chr4 114568642 114568663 -69719999 + AT_rich Low_complexity Low_complexity 1 21 0 3937 90 15 0 chr4 114570573 114571119 -69717543 + MER41A LTR ERV1 1 554 0 352 316 60 0 chr4 114571796 114572017 -69716645 + L1ME2 LINE L1 5632 5869 -301 231 186 0 0 chr4 114572319 114572362 -69716300 + (ATG)n Simple_repeat Simple_repeat 3 45 0 470 331 23 49 chr4 114572364 114572627 -69716035 - MIR SINE MIR 0 262 7 24 32 0 0 chr4 114573673 114573704 -69714958 + AT_rich Low_complexity Low_complexity 1 31 0 764 159 0 16 chr4 114573706 114573832 -69714830 + FLAM_C SINE Alu 3 126 -17 359 304 75 19 chr4 114574058 114574219 -69714443 + L1ME2 LINE L1 5981 6150 -14 22 0 0 0 chr4 114574297 114574319 -69714343 + AT_rich Low_complexity Low_complexity 1 22 0 27 62 0 0 chr4 114574422 114574470 -69714192 + AT_rich Low_complexity Low_complexity 1 48 0 1347 216 34 71 chr4 114574477 114574888 -69713774 + MSTD LTR MaLR 1 396 0 1854 224 69 57 chr4 114575818 114575852 -69712810 - LTR48B LTR ERV1 0 644 612 2137 113 181 17 chr4 114575852 114576266 -69712396 + LTR19A LTR ERV1 5 486 0 1854 224 69 57 chr4 114576266 114576865 -69711797 - LTR48B LTR ERV1 -32 612 3 239 367 32 48 chr4 114577054 114577302 -69711360 - LTR16C LTR ERVL -174 317 74 1457 233 70 29 chr4 114577423 114577879 -69710783 + MLT2B2 LTR ERVL 1 475 -40 318 107 0 0 chr4 114577882 114577938 -69710724 + (TG)n Simple_repeat Simple_repeat 2 57 0 2407 259 60 20 chr4 114577989 114578676 -69709986 + ERVL-B2 LTR ERVL 20 733 -5031 2358 223 11 14 chr4 114578701 114579221 -69709441 + ERVL-B2 LTR ERVL 663 1181 -4583 890 289 93 35 chr4 114579247 114579912 -69708750 - L1MEc LINE L1 -1923 4292 3589 250 241 139 15 chr4 114579942 114580079 -69708583 - L1MEc LINE L1 -4368 2028 1875 451 285 40 56 chr4 114580117 114580366 -69708296 - L1ME2 LINE L1 -26 6138 5894 240 91 23 57 chr4 114580443 114580531 -69708131 + (TATAA)n Simple_repeat Simple_repeat 5 89 0 1345 247 116 20 chr4 114580567 114581286 -69707376 - L1ME2 LINE L1 -421 5745 4958 28 48 0 0 chr4 114581757 114581799 -69706863 + AT_rich Low_complexity Low_complexity 1 42 0 28 86 0 0 chr4 114581942 114582012 -69706650 + AT_rich Low_complexity Low_complexity 1 70 0 289 233 70 0 chr4 114582041 114582127 -69706535 - L1ME2 LINE L1 -1716 4430 4339 2490 125 0 0 chr4 114583012 114583380 -69705282 - MER41B LTR ERV1 -265 370 3 1807 132 132 26 chr4 114583817 114584159 -69704503 - LTR8 LTR ERV1 0 691 314 352 185 0 0 chr4 114584159 114584224 -69704438 + L1MC4 LINE L1 6639 6703 -1339 306 263 12 0 chr4 114584161 114584241 -69704421 - L1MC4 LINE L1 -1350 6692 6612 * 232 155 17 17 chr4 114584244 114584302 -69704360 + (TATATG)n Simple_repeat Simple_repeat 5 62 0 1935 146 3 13 chr4 114584319 114584634 -69704028 - LTR8 LTR ERV1 -379 312 1 948 219 112 22 chr4 114584718 114585302 -69703360 - LTR48B LTR ERV1 0 644 1 195 317 8 81 chr4 114585812 114585935 -69702727 - MIR SINE MIR -27 235 122 26 50 0 0 chr4 114586896 114586936 -69701726 + AT_rich Low_complexity Low_complexity 1 40 0 2097 129 3 0 chr4 114587116 114587426 -69701236 - AluSx SINE Alu -1 311 1 26 0 0 0 chr4 114587686 114587712 -69700950 + AT_rich Low_complexity Low_complexity 1 26 0 253 293 24 12 chr4 114587883 114587965 -69700697 + MER93b LTR ERV1 1 83 -290 * 450 326 11 34 chr4 114587932 114588110 -69700552 + MER57B LTR ERV1 49 222 -212 422 208 122 11 chr4 114588161 114588278 -69700384 + MER57A LTR ERV1 240 394 -9 23 68 0 0 chr4 114588283 114588327 -69700335 + AT_rich Low_complexity Low_complexity 1 44 0 1613 197 0 14 chr4 114588365 114588655 -69700007 - AluJo SINE Alu -24 288 3 434 285 84 74 chr4 114588917 114589226 -69699436 - MLT2F LTR ERVL 0 663 352 263 284 114 72 chr4 114589283 114589519 -69699143 - MLT2F LTR ERVL -408 255 10 198 118 0 0 chr4 114590927 114590961 -69697701 + (TG)n Simple_repeat Simple_repeat 2 35 0 418 379 38 26 chr4 114590974 114591317 -69697345 + L1MEc LINE L1 42 388 -6008 558 300 109 24 chr4 114591566 114592380 -69696282 + L1MEc LINE L1 728 1415 -4800 559 213 9 0 chr4 114592396 114592504 -69696158 + FLAM_C SINE Alu 13 121 -22 215 77 0 26 chr4 114592504 114592543 -69696119 + (TTAAA)n Simple_repeat Simple_repeat 3 40 0 294 278 123 28 chr4 114592575 114592964 -69695698 + L1MEc LINE L1 1615 2040 -4356 230 245 0 64 chr4 114593003 114593097 -69695565 + L1MEc LINE L1 3043 3130 -3085 318 67 0 0 chr4 114593115 114593160 -69695502 + (TAA)n Simple_repeat Simple_repeat 2 46 0 265 316 48 12 chr4 114593170 114593420 -69695242 + L1MEc LINE L1 3259 3517 -2698 36885 37 23 2 chr4 114593448 114598999 -69689663 + L1P1 LINE L1 1 5706 -449 4387 138 35 14 chr4 114649085 114649846 -69638816 + L1M1 LINE L1 1833 2609 -4956 222 287 0 11 chr4 114652573 114652660 -69636002 + A-rich Low_complexity Low_complexity 5 90 0 413 291 20 27 chr4 114652709 114652857 -69635805 - MIR SINE MIR -32 230 84 261 135 0 0 chr4 114653276 114653328 -69635334 + (CA)n Simple_repeat Simple_repeat 2 53 0 1497 187 11 18 chr4 114653483 114653767 -69634895 - AluJo SINE Alu -25 287 6 242 359 76 27 chr4 114654066 114654250 -69634412 - MIR SINE MIR -50 212 20 2471 181 50 31 chr4 114654496 114655050 -69633612 - MER34B LTR ERV1 0 565 1 1994 215 133 2 chr4 114655243 114655703 -69632959 + MLT2B1 LTR ERVL 1 520 0 30 0 0 0 chr4 114656275 114656305 -69632357 + AT_rich Low_complexity Low_complexity 1 30 0 1583 197 30 0 chr4 114656335 114656630 -69632032 - AluJb SINE Alu -8 304 1 1621 179 3 13 chr4 114656805 114657106 -69631556 + AluJo SINE Alu 13 310 -2 22 70 0 0 chr4 114657792 114657835 -69630827 + AT_rich Low_complexity Low_complexity 1 43 0 710 121 26 0 chr4 114657965 114658081 -69630581 - AluSx SINE Alu -16 294 176 1362 120 0 0 chr4 114658171 114658354 -69630308 - AluSx SINE Alu -129 183 1 1468 161 74 55 chr4 114658728 114659095 -69629567 - LTR1 LTR ERV1 -218 567 194 873 165 80 0 chr4 114659085 114659273 -69629389 - LTR1 LTR ERV1 -538 247 45 * 35 63 0 0 chr4 114659410 114659473 -69629189 + AT_rich Low_complexity Low_complexity 1 63 0 465 263 75 70 chr4 114659547 114659775 -69628887 + L1MEc LINE L1 37 265 -6131 23 97 0 0 chr4 114661986 114662058 -69626604 + AT_rich Low_complexity Low_complexity 1 72 0 24 32 0 0 chr4 114662903 114662934 -69625728 + AT_rich Low_complexity Low_complexity 1 31 0 284 351 68 5 chr4 114663137 114663328 -69625334 - L2 LINE L2 -241 3072 2870 22 0 0 0 chr4 114664492 114664514 -69624148 + AT_rich Low_complexity Low_complexity 1 22 0 719 234 158 64 chr4 114665469 114665970 -69622692 + L1ME3A LINE L1 5593 6140 -30 22 0 0 0 chr4 114666577 114666599 -69622063 + AT_rich Low_complexity Low_complexity 1 22 0 24 77 0 0 chr4 114666658 114666710 -69621952 + AT_rich Low_complexity Low_complexity 1 52 0 264 267 0 17 chr4 114667629 114667689 -69620973 + polypyrimidine Low_complexity Low_complexity 4 62 0 269 294 59 0 chr4 114670476 114670578 -69618084 + ERVL LTR ERVL 5218 5325 -439 1940 151 3 7 chr4 114670636 114670927 -69617735 - AluSx SINE Alu -22 290 1 436 279 115 33 chr4 114671598 114671781 -69616881 + LTR67 LTR ERVL 360 557 0 28 0 0 0 chr4 114672217 114672245 -69616417 + AT_rich Low_complexity Low_complexity 1 28 0 293 315 56 51 chr4 114673082 114673260 -69615402 + L2 LINE L2 2332 2510 -804 206 365 41 82 chr4 114673642 114673935 -69614727 + L2 LINE L2 2996 3276 -37 3364 233 68 77 chr4 114675465 114676526 -69612136 - L1MB8 LINE L1 -6 6172 5103 2091 131 50 11 chr4 114676526 114676885 -69611777 + THE1C LTR MaLR 3 375 0 3364 233 68 77 chr4 114676885 114677590 -69611072 - L1MB8 LINE L1 -1075 5103 4442 1807 132 40 0 chr4 114677590 114677863 -69610799 - AluSx SINE Alu -26 286 3 3364 233 68 77 chr4 114677863 114678404 -69610258 - L1MB8 LINE L1 -1736 4442 3898 1888 132 10 13 chr4 114678598 114678908 -69609754 - AluSg SINE Alu -1 309 1 248 250 13 13 chr4 114679892 114679968 -69608694 + (TATATG)n Simple_repeat Simple_repeat 3 78 0 2206 108 3 0 chr4 114680294 114680590 -69608072 + AluSp SINE Alu 1 297 -16 251 238 38 29 chr4 114681164 114681269 -69607393 + (CATATA)n Simple_repeat Simple_repeat 2 107 0 1829 202 43 53 chr4 114681681 114682027 -69606635 + L1M LINE L1 4825 5157 -1005 210 37 0 0 chr4 114682027 114682054 -69606608 + (TTAA)n Simple_repeat Simple_repeat 2 28 0 1829 202 43 53 chr4 114682054 114682275 -69606387 + L1M LINE L1 5157 5379 -783 1542 199 7 0 chr4 114682321 114682607 -69606055 - AluJb SINE Alu -19 293 6 6019 198 99 48 chr4 114682607 114684178 -69604484 - MER52A LTR ERV1 -104 1651 1 349 216 54 0 chr4 114684178 114684240 -69604422 - MSTC LTR MaLR -361 67 2 264 100 0 0 chr4 114684520 114684560 -69604102 + (CA)n Simple_repeat Simple_repeat 2 41 0 23 0 0 0 chr4 114684641 114684664 -69603998 + AT_rich Low_complexity Low_complexity 1 23 0 2477 220 53 17 chr4 114685664 114686328 -69602334 + MER76 LTR ERV 1 688 0 21 0 0 0 chr4 114686947 114686968 -69601694 + AT_rich Low_complexity Low_complexity 1 21 0 312 320 47 6 chr4 114687236 114687408 -69601254 + L1ME LINE L1 7 185 -5885 980 244 197 23 chr4 114687415 114687805 -69600857 + MLT1C LTR MaLR 10 467 0 1842 45 12 8 chr4 114688457 114688700 -69599962 + AluY SINE Alu 60 303 -8 829 263 111 59 chr4 114688701 114688958 -69599704 - L1ME2 LINE L1 -141 6023 5781 1856 109 0 0 chr4 114688958 114689205 -69599457 + AluSc SINE Alu 38 284 -25 829 263 111 59 chr4 114689205 114690084 -69598578 - L1ME2 LINE L1 -383 5781 4826 332 223 64 43 chr4 114690089 114690130 -69598532 - MER58B DNA MER1_type -2079 341 302 330 26 0 0 chr4 114690130 114690169 -69598493 + (TG)n Simple_repeat Simple_repeat 2 40 0 332 223 64 43 chr4 114690169 114690221 -69598441 - MER58B DNA MER1_type -2118 302 246 1421 129 12 17 chr4 114690236 114690476 -69598186 - L1PA16 LINE L1 -9 6157 5919 488 152 87 0 chr4 114690670 114690762 -69597900 - AluSg SINE Alu -210 100 1 216 200 0 0 chr4 114690771 114690816 -69597846 + (TA)n Simple_repeat Simple_repeat 2 46 0 369 249 113 92 chr4 114690833 114691018 -69597644 + MIR SINE MIR 9 197 -65 25 31 0 0 chr4 114691053 114691085 -69597577 + AT_rich Low_complexity Low_complexity 1 32 0 210 71 0 0 chr4 114691605 114691633 -69597029 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 369 109 0 0 chr4 114691677 114691741 -69596921 + (T)n Simple_repeat Simple_repeat 1 64 0 293 300 0 30 chr4 114694681 114694781 -69593881 + L1M4 LINE L1 305 401 -6438 1009 274 28 45 chr4 114694956 114695313 -69593349 - MLT1A2 LTR MaLR -23 351 1 257 290 109 49 chr4 114697194 114697377 -69591285 - MIR SINE MIR -50 212 19 349 337 0 36 chr4 114697831 114697997 -69590665 - L3 LINE CR1 -546 1031 872 1584 199 68 112 chr4 114698159 114698687 -69589975 + MLT1D LTR MaLR 1 505 0 23 0 0 0 chr4 114698813 114698836 -69589826 + AT_rich Low_complexity Low_complexity 1 23 0 2251 181 16 11 chr4 114698935 114699104 -69589558 + MER65A LTR ERV1 1 168 -277 387 0 0 0 chr4 114699104 114699147 -69589515 + (CA)n Simple_repeat Simple_repeat 2 44 0 2251 181 16 11 chr4 114699147 114699420 -69589242 + MER65A LTR ERV1 168 445 0 2368 241 66 43 chr4 114699429 114700233 -69588429 + MER65A-int LTR ERV1 11 942 -4046 387 0 0 0 chr4 114700574 114700617 -69588045 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 357 24 0 0 chr4 114700819 114700861 -69587801 + (CA)n Simple_repeat Simple_repeat 2 43 0 2680 221 43 51 chr4 114701110 114701976 -69586686 + MER65A-int LTR ERV1 1047 1905 -2966 2341 62 0 50 chr4 114701985 114702306 -69586356 + AluY SINE Alu 1 305 -6 682 208 13 58 chr4 114702318 114702472 -69586190 + FAM SINE Alu 2 148 -37 1372 209 33 0 chr4 114702496 114702798 -69585864 + MER65A-int LTR ERV1 1901 2212 -2659 296 217 0 17 chr4 114702798 114702858 -69585804 + MLT2C1 LTR ERVL 196 254 -143 1702 276 30 32 chr4 114702859 114703454 -69585208 + L1M4 LINE L1 385 978 -5444 2922 264 43 7 chr4 114703455 114704540 -69584122 + L1M4 LINE L1 3412 4535 -2406 587 237 5 68 chr4 114704596 114704803 -69583859 + L1M4 LINE L1 4947 5140 -1801 425 256 147 6 chr4 114705241 114705397 -69583265 + MIR SINE MIR 72 249 -13 23 0 0 0 chr4 114705447 114705470 -69583192 + AT_rich Low_complexity Low_complexity 1 23 0 289 301 163 20 chr4 114705796 114705949 -69582713 + MIR SINE MIR 64 238 -24 229 103 0 0 chr4 114706279 114706318 -69582344 + L1MA3 LINE L1 6267 6305 0 21 36 0 0 chr4 114706774 114706802 -69581860 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 114706876 114706899 -69581763 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr4 114707799 114707831 -69580831 + AT_rich Low_complexity Low_complexity 1 32 0 815 268 76 41 chr4 114708577 114709260 -69579402 + L1M4 LINE L1 1184 1887 -4972 1511 43 0 0 chr4 114709260 114709445 -69579217 + L1PA4 LINE L1 5969 6153 -2 815 268 76 41 chr4 114709445 114709532 -69579130 + L1M4 LINE L1 1887 1970 -4889 22 56 0 0 chr4 114710014 114710050 -69578612 + AT_rich Low_complexity Low_complexity 1 36 0 262 250 0 60 chr4 114710574 114710658 -69578004 + GA-rich Low_complexity Low_complexity 4 82 0 22 35 0 0 chr4 114710933 114710962 -69577700 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4 114712024 114712047 -69576615 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr4 114712314 114712341 -69576321 + AT_rich Low_complexity Low_complexity 1 27 0 1019 173 17 25 chr4 114713042 114713279 -69575383 - L1MB1 LINE L1 0 6168 5934 309 343 79 39 chr4 114714961 114715241 -69573421 + ERVL LTR ERVL 3342 3632 -2132 444 284 112 24 chr4 114715415 114715665 -69572997 + ERVL LTR ERVL 860 1131 -4633 1012 165 29 120 chr4 114715705 114715790 -69572872 - MLT1A2 LTR MaLR -87 287 196 261 0 0 0 chr4 114715790 114715819 -69572843 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1012 165 29 120 chr4 114715819 114716049 -69572613 - MLT1A2 LTR MaLR -178 196 1 1479 335 53 14 chr4 114716092 114716805 -69571857 + ERVL LTR ERVL 1367 2107 -3657 1695 309 100 55 chr4 114716824 114717190 -69571472 + ERVL LTR ERVL 2318 2666 -3098 2018 143 54 14 chr4 114717190 114717540 -69571122 + THE1B LTR MaLR 1 364 0 9336 120 52 45 chr4 114717540 114719108 -69569554 + THE1B-int LTR MaLR 1 1580 0 2136 129 52 20 chr4 114719112 114719461 -69569201 + THE1B LTR MaLR 5 364 0 1695 309 100 55 chr4 114719461 114720404 -69568258 + ERVL LTR ERVL 2668 3693 -2071 230 415 85 22 chr4 114721159 114721475 -69567187 + L2 LINE L2 2550 2885 -429 1475 197 14 51 chr4 114721552 114721903 -69566759 + MER44D DNA MER2_type 2 609 0 261 98 0 0 chr4 114721916 114721957 -69566705 + (CA)n Simple_repeat Simple_repeat 1 41 0 309 51 0 0 chr4 114722767 114722806 -69565856 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 21232 183 17 25 chr4 114722811 114725778 -69562884 - L1PA11 LINE L1 -8 7604 4614 1844 155 39 33 chr4 114725778 114726140 -69562522 + THE1B LTR MaLR 1 364 0 21232 183 17 25 chr4 114726140 114729206 -69559456 - L1PA11 LINE L1 -2998 4614 803 563 167 8 8 chr4 114729207 114729327 -69559335 + L1MA7 LINE L1 6166 6285 -6 22 35 0 0 chr4 114729327 114729356 -69559306 + AT_rich Low_complexity Low_complexity 1 29 0 42 65 0 0 chr4 114730901 114730978 -69557684 + AT_rich Low_complexity Low_complexity 1 77 0 216 343 91 0 chr4 114731121 114731220 -69557442 + L3 LINE CR1 247 354 -1223 183 80 0 0 chr4 114731243 114731268 -69557394 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 1739 175 3 0 chr4 114731797 114732094 -69556568 - AluJb SINE Alu -14 298 1 6079 72 0 87 chr4 114732245 114733259 -69555403 - L1PA7 LINE L1 0 6154 5254 9839 95 10 1 chr4 114733264 114734670 -69553992 + L1P LINE L1 2890 4307 -1839 2353 86 0 10 chr4 114734804 114735108 -69553554 + AluSx SINE Alu 1 301 -11 579 29 0 0 chr4 114735122 114735191 -69553471 + (TG)n Simple_repeat Simple_repeat 2 70 0 327 278 12 65 chr4 114736233 114736402 -69552260 - MLT2E LTR ERVL 0 628 469 2273 174 16 23 chr4 114736422 114736858 -69551804 - Tigger2a DNA MER2_type -1 433 1 3936 258 20 29 chr4 114737867 114739424 -69549238 + L1PA13 LINE L1 1 1815 -4972 1031 238 30 3 chr4 114739424 114739723 -69548939 - L1PA13 LINE L1 -4666 2121 1815 * 6601 236 27 10 chr4 114739708 114741551 -69547111 + L1PA13 LINE L1 2305 4930 -1867 202 224 20 0 chr4 114741778 114741827 -69546835 + (TG)n Simple_repeat Simple_repeat 1 50 0 24 0 0 0 chr4 114741996 114742020 -69546642 + AT_rich Low_complexity Low_complexity 1 24 0 645 356 34 34 chr4 114742299 114742743 -69545919 - L2 LINE L2 -9 3304 2861 487 364 68 30 chr4 114743705 114744233 -69544429 + L2 LINE L2 2213 2760 -554 237 405 127 3 chr4 114744219 114744510 -69544152 + L2 LINE L2 2942 3268 -4 * 3294 149 2 13 chr4 114744931 114745460 -69543202 + MER1A DNA MER1_type 1 523 -4 2266 88 0 3 chr4 114746190 114746485 -69542177 - AluY SINE Alu -17 294 1 336 313 15 0 chr4 114748257 114748388 -69540274 + (TA)n Simple_repeat Simple_repeat 2 134 0 192 152 0 0 chr4 114748939 114748972 -69539690 + (CA)n Simple_repeat Simple_repeat 2 34 0 2097 184 47 78 chr4 114748974 114749081 -69539581 + L1MC3 LINE L1 6789 6898 -887 198 0 0 0 chr4 114749081 114749103 -69539559 + (CA)n Simple_repeat Simple_repeat 2 23 0 2097 184 47 78 chr4 114749103 114749572 -69539090 + L1MC3 LINE L1 6898 7347 -438 25 0 0 0 chr4 114750201 114750226 -69538436 + AT_rich Low_complexity Low_complexity 1 25 0 1825 185 21 3 chr4 114750560 114750900 -69537762 - MER7A DNA MER2_type -1 345 2 209 216 20 0 chr4 114751423 114751474 -69537188 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 1772 152 157 24 chr4 114751716 114752092 -69536570 - MSTA LTR MaLR 0 428 3 275 150 17 0 chr4 114752237 114752297 -69536365 + (TA)n Simple_repeat Simple_repeat 1 61 0 27 29 0 0 chr4 114752441 114752475 -69536187 + AT_rich Low_complexity Low_complexity 1 34 0 24 67 0 0 chr4 114752829 114752874 -69535788 + AT_rich Low_complexity Low_complexity 1 45 0 404 316 48 43 chr4 114752960 114753147 -69535515 - MIR SINE MIR -10 252 65 33 43 0 0 chr4 114754131 114754178 -69534484 + AT_rich Low_complexity Low_complexity 1 47 0 700 380 108 23 chr4 114754323 114755615 -69533047 - L2 LINE L2 -670 2644 1464 401 0 20 0 chr4 114755615 114755664 -69532998 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 2019 118 4 0 chr4 114755667 114755946 -69532716 - AluSx SINE Alu -32 280 1 700 380 108 23 chr4 114755946 114756105 -69532557 - L2 LINE L2 -1851 1463 1064 2743 83 19 71 chr4 114756809 114757276 -69531386 - MLT2A1 LTR ERVL -1 443 1 25 31 0 0 chr4 114757468 114757500 -69531162 + AT_rich Low_complexity Low_complexity 1 32 0 364 340 27 14 chr4 114757935 114758082 -69530580 + L2 LINE L2 3158 3306 -7 212 214 14 14 chr4 114758719 114758789 -69529873 + A-rich Low_complexity Low_complexity 2 71 0 728 192 23 0 chr4 114758981 114759111 -69529551 + AluJb SINE Alu 1 133 -179 604 35 23 0 chr4 114759411 114759498 -69529164 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 7598 24 0 0 chr4 114760065 114761439 -69527223 - L1PA4 LINE L1 -3 6152 4786 4696 33 7 0 chr4 114761439 114762011 -69526651 + L1PA4 LINE L1 4216 4791 -1355 214 360 23 23 chr4 114762149 114762235 -69526427 - L2 LINE L2 -48 3224 3139 22 0 0 0 chr4 114762252 114762274 -69526388 + AT_rich Low_complexity Low_complexity 1 22 0 2721 69 3 0 chr4 114762660 114763020 -69525642 - L1PA7 LINE L1 0 6154 5794 210 167 0 0 chr4 114763058 114763094 -69525568 + A-rich Low_complexity Low_complexity 4 39 0 221 367 92 0 chr4 114763992 114764101 -69524561 - L2 LINE L2 -218 3054 2936 2235 80 3 7 chr4 114765313 114765630 -69523032 - AluSq SINE Alu 0 313 1 1911 226 8 89 chr4 114765653 114766167 -69522495 + MER70A LTR ERVL 1 472 0 1556 206 116 3 chr4 114766540 114766894 -69521768 + MSTD LTR MaLR 3 396 0 2771 243 69 46 chr4 114766989 114768057 -69520605 - Zaphod DNA AcHobo -2937 1094 2 893 334 123 42 chr4 114768349 114769197 -69519465 + L2 LINE L2 988 1903 -1411 231 324 49 69 chr4 114769359 114769606 -69519056 + L2 LINE L2 2256 2497 -817 288 198 250 43 chr4 114769750 114769866 -69518796 + MER5A DNA MER1_type 44 183 -6 205 26 26 51 chr4 114769970 114770009 -69518653 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 233 321 54 18 chr4 114770013 114770125 -69518537 + L2 LINE L2 2926 3041 -272 694 316 57 42 chr4 114770190 114770453 -69518209 + LTR40a LTR ERVL 91 414 -105 27 0 0 0 chr4 114771345 114771372 -69517290 + AT_rich Low_complexity Low_complexity 1 27 0 681 347 122 0 chr4 114771494 114771805 -69516857 + L3 LINE CR1 933 1281 -296 439 285 22 22 chr4 114771823 114771960 -69516702 - L2 LINE L2 -252 3061 2925 1545 215 10 3 chr4 114773601 114773908 -69514754 - AluJo SINE Alu -3 309 1 270 368 17 8 chr4 114774054 114774171 -69514491 + L2 LINE L2 3196 3313 0 381 223 109 18 chr4 114774252 114774481 -69514181 - Charlie1a DNA MER1_type -4 1451 1202 2729 246 70 42 chr4 114774510 114775506 -69513156 - Charlie1a DNA MER1_type -430 1025 2 23 0 0 0 chr4 114775953 114775976 -69512686 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr4 114776015 114776045 -69512617 + AT_rich Low_complexity Low_complexity 1 30 0 824 273 86 13 chr4 114776674 114777152 -69511510 + MLT2F LTR ERVL 1 529 -134 3652 161 64 12 chr4 114777153 114777841 -69510821 + MER50 LTR ERV1 1 724 -10 4526 162 5 26 chr4 114777841 114778651 -69510011 + MER50-int LTR ERV1 33 825 -6380 2024 156 36 25 chr4 114778651 114779011 -69509651 + THE1B LTR MaLR 1 364 0 6593 117 97 2 chr4 114779011 114780029 -69508633 + THE1B-int LTR MaLR 1 1115 -465 1258 85 341 5 chr4 114780022 114780245 -69508417 + THE1B-int LTR MaLR 1283 1580 0 * 2014 146 36 30 chr4 114780245 114780607 -69508055 + THE1B LTR MaLR 1 364 0 3367 135 58 4 chr4 114780607 114781486 -69507176 + MER50-int LTR ERV1 821 1850 -5355 * 7609 208 44 28 chr4 114781482 114783206 -69505456 + MER50-int LTR ERV1 2788 4538 -2667 1489 153 11 11 chr4 114783208 114783470 -69505192 + MER50-int LTR ERV1 4184 4445 -1501 886 117 0 0 chr4 114783473 114783601 -69505061 + MER50-int LTR ERV1 6840 6967 -238 1405 363 108 26 chr4 114784276 114785732 -69502930 + L2 LINE L2 940 2515 -799 862 20 0 0 chr4 114785732 114785834 -69502828 - L1PA2 LINE L1 0 6155 6054 220 258 0 30 chr4 114786091 114786157 -69502505 + (CATATA)n Simple_repeat Simple_repeat 3 66 0 533 332 44 31 chr4 114786174 114786400 -69502262 + L2 LINE L2 2864 3092 -221 26 30 0 0 chr4 114786556 114786589 -69502073 + AT_rich Low_complexity Low_complexity 1 33 0 26 64 0 0 chr4 114786683 114786730 -69501932 + AT_rich Low_complexity Low_complexity 1 47 0 461 306 116 55 chr4 114787418 114787833 -69500829 - HAL1b LINE L1 -794 554 115 1290 162 59 69 chr4 114787924 114788392 -69500270 + AluJb SINE Alu 1 465 0 229 340 69 13 chr4 114788584 114788743 -69499919 - MER5B DNA MER1_type -9 169 2 30 0 0 0 chr4 114789515 114789545 -69499117 + AT_rich Low_complexity Low_complexity 1 30 0 2083 133 0 3 chr4 114789868 114790169 -69498493 + AluSx SINE Alu 1 300 -12 613 382 36 38 chr4 114792507 114792784 -69495878 + L2 LINE L2 2866 3143 -170 2207 145 5 49 chr4 114792784 114793192 -69495470 + MLT1B LTR MaLR 1 390 0 613 382 36 38 chr4 114793192 114793362 -69495300 + L2 LINE L2 3143 3312 -1 1565 126 109 11 chr4 114793554 114793839 -69494823 + MER4C LTR ERV1 145 457 -8 446 262 41 35 chr4 114793941 114794113 -69494549 + MLT2E LTR ERVL 411 583 -45 21 36 0 0 chr4 114794245 114794273 -69494389 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr4 114794322 114794364 -69494298 + AT_rich Low_complexity Low_complexity 1 42 0 27 0 0 0 chr4 114794518 114794545 -69494117 + AT_rich Low_complexity Low_complexity 1 27 0 229 345 42 35 chr4 114794727 114794869 -69493793 + MLT1H LTR MaLR 157 299 -250 456 300 93 0 chr4 114794932 114795082 -69493580 - L1ME LINE L1 -447 5723 5560 237 258 16 0 chr4 114795402 114795464 -69493198 + (CATA)n Simple_repeat Simple_repeat 2 64 0 1130 241 100 16 chr4 114795822 114796142 -69492520 - MLT1C LTR MaLR -120 347 1 655 71 10 10 chr4 114796248 114796347 -69492315 + (GAAA)n Simple_repeat Simple_repeat 4 102 0 247 371 106 34 chr4 114796571 114796959 -69491703 - L2 LINE L2 -607 2707 2292 180 0 0 0 chr4 114797339 114797359 -69491303 + (CA)n Simple_repeat Simple_repeat 2 21 0 22 70 0 0 chr4 114797897 114797940 -69490722 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr4 114797976 114797998 -69490664 + AT_rich Low_complexity Low_complexity 1 22 0 2447 4 0 0 chr4 114798259 114798527 -69490135 - AluY SINE Alu 0 311 44 1007 150 6 12 chr4 114798530 114798697 -69489965 - FRAM SINE Alu -18 158 1 706 177 0 0 chr4 114798702 114798861 -69489801 - FLAM_A SINE Alu 0 176 18 23 78 0 0 chr4 114799541 114799592 -69489070 + AT_rich Low_complexity Low_complexity 1 51 0 180 0 0 0 chr4 114799852 114799872 -69488790 + (T)n Simple_repeat Simple_repeat 1 20 0 347 41 20 0 chr4 114800054 114800103 -69488559 + (GA)n Simple_repeat Simple_repeat 1 50 0 1501 222 86 9 chr4 114800137 114800570 -69488092 - MLT1C LTR MaLR 0 467 2 632 342 29 0 chr4 114801595 114801835 -69486827 - MIR SINE MIR -1 261 15 469 279 159 46 chr4 114802439 114802765 -69485897 + LTR33A LTR ERVL 12 374 -149 236 288 89 82 chr4 114802904 114803196 -69485466 - L2 LINE L2 -1229 2085 1792 37 39 0 0 chr4 114804137 114804188 -69484474 + AT_rich Low_complexity Low_complexity 1 51 0 2520 50 0 0 chr4 114804843 114805142 -69483520 - AluY SINE Alu -12 299 1 2150 112 7 0 chr4 114805252 114805557 -69483105 - AluSp SINE Alu -6 307 1 223 273 0 0 chr4 114805630 114805685 -69482977 + A-rich Low_complexity Low_complexity 5 59 0 854 336 82 32 chr4 114805980 114806483 -69482179 - MLT2E LTR ERVL 0 628 101 230 290 30 20 chr4 114807555 114807655 -69481007 - MLT1J1 LTR MaLR 0 446 346 305 295 74 0 chr4 114807815 114807937 -69480725 - MLT1J1 LTR MaLR -313 133 3 268 250 0 0 chr4 114807985 114808053 -69480609 + LTR60 LTR ERV1 1 68 -518 915 276 50 12 chr4 114808189 114808511 -69480151 + LTR43 LTR ERV1 132 465 -137 5967 163 16 17 chr4 114809037 114810664 -69477998 + L1MA3 LINE L1 4681 6305 0 1627 164 29 18 chr4 114810728 114811033 -69477629 + AluJb SINE Alu 1 308 0 917 272 219 28 chr4 114811061 114811888 -69476774 + L1M4 LINE L1 3607 4591 -1555 452 250 36 0 chr4 114811971 114812083 -69476579 + MER58A DNA MER1_type 39 154 0 2587 176 5 22 chr4 114812083 114813004 -69475658 + L1P4 LINE L1 4813 5718 -448 1985 133 30 7 chr4 114913081 114913381 -69375281 - AluSx SINE Alu -5 307 1 183 346 178 10 chr4 114913552 114913653 -69375009 + L2 LINE L2 3195 3312 -1 23 33 0 0 chr4 114914035 114914065 -69374597 + AT_rich Low_complexity Low_complexity 1 30 0 416 299 118 65 chr4 114915386 114915911 -69372751 - MLT1H1 LTR MaLR 0 555 3 227 305 21 32 chr4 114916040 114916135 -69372527 + L2 LINE L2 3210 3303 -10 203 133 0 0 chr4 114916336 114916366 -69372296 + (CA)n Simple_repeat Simple_repeat 1 30 0 2384 55 3 6 chr4 114916826 114917138 -69371524 + AluY SINE Alu 1 311 0 25 51 0 0 chr4 114917883 114917922 -69370740 + AT_rich Low_complexity Low_complexity 1 39 0 332 310 41 6 chr4 114918174 114918304 -69370358 + MIR SINE MIR 19 150 -58 821 328 126 17 chr4 114918494 114919305 -69369357 - L2 LINE L2 0 3313 2416 590 274 98 14 chr4 114919340 114919555 -69369107 + MIR SINE MIR 5 237 -25 416 305 113 0 chr4 114919748 114919925 -69368737 + MIR SINE MIR 6 202 -60 506 290 48 5 chr4 114919942 114920128 -69368534 - L2 LINE L2 -937 2377 2184 2214 136 19 27 chr4 114920796 114921163 -69367499 - THE1B LTR MaLR 0 364 1 261 306 59 0 chr4 114921259 114921344 -69367318 + MIR SINE MIR 103 192 -70 273 232 0 0 chr4 114922585 114922641 -69366021 + MIR SINE MIR 88 143 -119 1076 313 124 4 chr4 114922720 114923171 -69365491 + MLT1H1 LTR MaLR 42 546 -9 317 261 11 0 chr4 114923486 114923578 -69365084 - L1M4 LINE L1 -2103 4043 3951 217 297 172 8 chr4 114923622 114923750 -69364912 + L2 LINE L2 3161 3309 -4 26 0 0 0 chr4 114924003 114924029 -69364633 + AT_rich Low_complexity Low_complexity 1 26 0 369 225 0 0 chr4 114924167 114924238 -69364424 - MIR SINE MIR -118 144 74 1739 175 98 66 chr4 114925314 114925755 -69362907 - MER31B LTR ERV1 0 466 12 743 218 4 79 chr4 114926047 114926299 -69362363 - L1M4 LINE L1 -3140 3006 2774 * 1694 211 50 5 chr4 114926284 114926686 -69361976 + L1MA10 LINE L1 5914 6333 -1 651 274 118 11 chr4 114927528 114927885 -69360777 + L1M4 LINE L1 4377 4771 -1375 296 314 54 60 chr4 114927927 114928104 -69360558 - MIR SINE MIR -63 199 21 23 54 0 0 chr4 114928968 114929005 -69359657 + AT_rich Low_complexity Low_complexity 1 37 0 787 197 47 28 chr4 114930270 114930483 -69358179 - MER67C LTR ERV1 -493 217 1 24 32 0 0 chr4 114930522 114930553 -69358109 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr4 114930655 114930679 -69357983 + AT_rich Low_complexity Low_complexity 1 24 0 1965 258 70 53 chr4 114931333 114932149 -69356513 - L1ME1 LINE L1 -20 6146 5296 4811 123 5 4 chr4 114932149 114932896 -69355766 - L1PA14 LINE L1 -2 6159 5412 1965 258 70 53 chr4 114932896 114933153 -69355509 - L1ME1 LINE L1 -870 5296 5045 22 0 0 0 chr4 114933523 114933545 -69355117 + AT_rich Low_complexity Low_complexity 1 22 0 730 291 83 31 chr4 114934128 114934664 -69353998 + MLT1G1 LTR MaLR 9 574 -16 4396 125 20 8 chr4 114935046 114935702 -69352960 + LTR62 LTR ERVK 25 688 -31 351 314 72 29 chr4 114935919 114936126 -69352536 + MIR SINE MIR 8 223 -39 230 274 150 9 chr4 114936176 114936289 -69352373 + L2 LINE L2 2129 2257 -1057 228 265 229 12 chr4 114937446 114937529 -69351133 - MER5B DNA MER1_type 0 178 78 631 236 111 5 chr4 114939420 114939619 -69349043 - Charlie1 DNA MER1_type -831 1930 1711 986 263 126 34 chr4 114939654 114940129 -69348533 - LTR40a LTR ERVL 0 519 1 847 297 46 12 chr4 114940139 114940439 -69348223 - HERVL40 LTR ERVL -10 5520 2818 2196 116 3 7 chr4 114940570 114940873 -69347789 + AluSx SINE Alu 1 302 -10 22 56 0 0 chr4 114940879 114940915 -69347747 + AT_rich Low_complexity Low_complexity 1 36 0 2215 93 0 0 chr4 114941269 114941548 -69347114 + AluY SINE Alu 1 279 -32 185 0 40 0 chr4 114941548 114941573 -69347089 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 373 167 0 24 chr4 114941576 114941660 -69347002 - L1MA7 LINE L1 -29 6262 6181 13654 174 28 50 chr4 114941803 114942792 -69345870 + L1PA12 LINE L1 2750 3759 -3112 1970 118 3 7 chr4 114942792 114943079 -69345583 - AluSg SINE Alu -8 302 17 566 112 20 10 chr4 114943079 114943177 -69345485 + AluSg/x SINE Alu 214 312 0 13654 174 28 50 chr4 114943177 114943301 -69345361 + L1PA12 LINE L1 3758 3883 -2988 396 0 0 0 chr4 114943301 114943345 -69345317 + (CA)n Simple_repeat Simple_repeat 2 45 0 13654 174 28 50 chr4 114943345 114943869 -69344793 + L1PA12 LINE L1 3883 4417 -2454 378 0 0 0 chr4 114943869 114943911 -69344751 + (CA)n Simple_repeat Simple_repeat 2 43 0 13654 174 28 50 chr4 114943911 114945407 -69343255 + L1PA12 LINE L1 4417 5877 -994 261 0 0 0 chr4 114945407 114945436 -69343226 + (TCTA)n Simple_repeat Simple_repeat 3 31 0 13654 174 28 50 chr4 114945436 114946254 -69342408 + L1PA12 LINE L1 5877 6711 -160 2640 152 58 7 chr4 114946254 114946795 -69341867 + L1MA2 LINE L1 5730 6304 0 22 35 0 0 chr4 114946795 114946824 -69341838 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr4 114948011 114948031 -69340631 + (A)n Simple_repeat Simple_repeat 1 20 0 2040 294 56 27 chr4 114948031 114949577 -69339085 - HERVL40 LTR ERVL -1336 4194 2569 569 287 5 38 chr4 114949624 114949833 -69338829 - HERVL40 LTR ERVL -3921 1609 1408 2292 101 3 0 chr4 114949957 114950254 -69338408 + AluSx SINE Alu 2 299 -13 22 35 0 0 chr4 114950434 114950463 -69338199 + AT_rich Low_complexity Low_complexity 1 29 0 325 300 109 35 chr4 114951193 114951515 -69337147 - MLT1F1 LTR MaLR -32 535 150 255 417 8 0 chr4 114951521 114951653 -69337009 - MLT1H1 LTR MaLR -351 204 72 37 62 0 0 chr4 114951669 114951734 -69336928 + AT_rich Low_complexity Low_complexity 1 65 0 21 36 0 0 chr4 114951842 114951870 -69336792 + AT_rich Low_complexity Low_complexity 1 28 0 2191 261 39 67 chr4 114951900 114952731 -69335931 + L1M4 LINE L1 10 816 -5726 8045 169 21 3 chr4 114952734 114954163 -69334499 - Tigger1 DNA MER2_type 0 2418 965 1753 80 12 36 chr4 114954163 114954414 -69334248 + AluSc SINE Alu 38 282 -27 24 0 0 0 chr4 114954414 114954438 -69334224 + AT_rich Low_complexity Low_complexity 1 24 0 299 146 0 0 chr4 114954438 114954486 -69334176 - Tigger1 DNA MER2_type -1442 976 929 1128 204 9 0 chr4 114954503 114954724 -69333938 - Tigger1 DNA MER2_type -2191 227 5 2958 266 59 45 chr4 114954728 114956765 -69331897 + L1M4 LINE L1 818 3013 -3631 2042 128 0 3 chr4 114956765 114957055 -69331607 + AluSx SINE Alu 3 291 -21 2958 266 59 45 chr4 114957055 114958259 -69330403 + L1M4 LINE L1 3013 4200 -2444 2169 113 0 0 chr4 114958297 114958589 -69330073 - AluSg SINE Alu -17 293 2 22 0 0 0 chr4 114958953 114958975 -69329687 + AT_rich Low_complexity Low_complexity 1 22 0 285 333 116 24 chr4 114958984 114959191 -69329471 + MIR SINE MIR 30 255 -7 215 299 23 35 chr4 114959245 114959332 -69329330 - MER5A DNA MER1_type -41 148 63 505 273 142 55 chr4 114960845 114961017 -69327645 - MLT1H LTR MaLR -16 533 377 207 0 0 0 chr4 114961017 114961040 -69327622 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 505 273 142 55 chr4 114961040 114961233 -69327429 - MLT1H LTR MaLR -172 377 136 455 292 144 20 chr4 114962072 114962267 -69326395 - MLT1H LTR MaLR -88 461 243 259 315 0 0 chr4 114962501 114962574 -69326088 - LTR16A LTR ERVL -316 134 62 216 0 0 0 chr4 114964082 114964106 -69324556 + (T)n Simple_repeat Simple_repeat 1 24 0 195 262 0 66 chr4 114964174 114964235 -69324427 + L3 LINE CR1 733 789 -788 22 35 0 0 chr4 114964324 114964353 -69324309 + AT_rich Low_complexity Low_complexity 1 29 0 649 270 136 45 chr4 114964888 114965381 -69323281 + L1MDa LINE L1 1740 2277 -4263 204 125 0 0 chr4 114965420 114965452 -69323210 + (TATATG)n Simple_repeat Simple_repeat 5 36 0 462 236 58 114 chr4 114965663 114966006 -69322656 + L1MC4a LINE L1 5614 5937 -1871 29 0 0 0 chr4 114966193 114966222 -69322440 + AT_rich Low_complexity Low_complexity 1 29 0 2634 76 0 36 chr4 114966527 114966920 -69321742 - L1P LINE L1 -1402 4744 4366 21 89 0 0 chr4 114967330 114967386 -69321276 + AT_rich Low_complexity Low_complexity 1 56 0 27 0 0 0 chr4 114967759 114967786 -69320876 + AT_rich Low_complexity Low_complexity 1 27 0 184 254 9 9 chr4 114968266 114968380 -69320282 + (TA)n Simple_repeat Simple_repeat 1 114 0 717 234 26 0 chr4 114968385 114968539 -69320123 - MER2 DNA MER2_type -187 158 1 533 274 27 0 chr4 114968540 114968686 -69319976 + LTR40b LTR ERVL 304 453 -9 480 168 44 35 chr4 114968768 114968881 -69319781 - L1ME LINE L1 -437 5727 5614 18786 174 26 20 chr4 114968936 114972502 -69316160 + L1M1 LINE L1 12 3600 -3965 7533 213 32 25 chr4 114972512 114972710 -69315952 + L1M1 LINE L1 3723 3918 -3647 261 0 0 0 chr4 114972710 114972739 -69315923 + (GA)n Simple_repeat Simple_repeat 2 30 0 7533 213 32 25 chr4 114972739 114974480 -69314182 + L1M1 LINE L1 3918 5677 -1888 1574 354 70 11 chr4 114974486 114974736 -69313926 + L1M1 LINE L1 5811 6045 -1520 1841 175 8 0 chr4 114974736 114975084 -69313578 + L1MA3 LINE L1 5948 6305 0 1574 354 70 11 chr4 114975084 114975650 -69313012 + L1M1 LINE L1 6045 6675 -890 931 225 0 11 chr4 114975656 114975843 -69312819 + MLT1A1 LTR MaLR 9 193 -172 319 274 68 8 chr4 114975850 114975967 -69312695 + L1MC/D LINE L1 5463 5586 -656 659 151 0 0 chr4 114978005 114978111 -69310551 + U6 snRNA snRNA 1 106 -1 291 200 0 0 chr4 114978111 114978161 -69310501 + L1P LINE L1 4545 4594 -1552 362 322 91 41 chr4 114978270 114978612 -69310050 - L1M4 LINE L1 -3141 3005 2647 491 290 155 5 chr4 114978649 114978841 -69309821 + LTR16B LTR ERVL 3 223 -241 847 267 74 36 chr4 114978841 114979231 -69309431 - MLT1D LTR MaLR 0 505 101 286 333 75 11 chr4 114979316 114979490 -69309172 + LTR16B LTR ERVL 220 404 -60 417 344 31 24 chr4 114979665 114979959 -69308703 + ERVL LTR ERVL 4267 4562 -1202 231 264 38 0 chr4 114979968 114980021 -69308641 + L2 LINE L2 3218 3272 0 248 361 31 15 chr4 114980144 114980274 -69308388 - MIR SINE MIR -116 146 15 387 21 0 0 chr4 114980893 114980940 -69307722 - MADE1 DNA Mariner 0 80 34 232 107 39 48 chr4 114980941 114981044 -69307618 + (TAAA)n Simple_repeat Simple_repeat 3 104 0 282 277 10 0 chr4 114981109 114981210 -69307452 + (TA)n Simple_repeat Simple_repeat 1 102 0 28 86 0 0 chr4 114981293 114981363 -69307299 + AT_rich Low_complexity Low_complexity 1 70 0 315 0 0 0 chr4 114982652 114982687 -69305975 + (CA)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr4 114982968 114982990 -69305672 + AT_rich Low_complexity Low_complexity 1 22 0 338 318 24 8 chr4 114983187 114983313 -69305349 - Charlie2 DNA MER1_type -2654 128 1 21 0 0 0 chr4 114984061 114984082 -69304580 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 114984270 114984295 -69304367 + AT_rich Low_complexity Low_complexity 1 25 0 202 242 0 16 chr4 114984483 114984545 -69304117 + T-rich Low_complexity Low_complexity 2 62 0 5232 191 13 5 chr4 114984802 114986392 -69302270 - L1MA8 LINE L1 -10 7241 5635 2082 148 23 0 chr4 114986447 114986798 -69301864 + L1PA16 LINE L1 5803 6161 -5 648 185 35 104 chr4 114986806 114987066 -69301596 - L1MA8 LINE L1 -4217 2889 2648 2222 313 40 13 chr4 114987081 114987125 -69301537 - L1MA8 LINE L1 -5226 1880 1839 7121 48 4 0 chr4 114987125 114988161 -69300501 - L1PA5 LINE L1 0 6154 5122 2222 313 40 13 chr4 114988161 114989298 -69299364 - L1MA8 LINE L1 -5267 1839 7 675 320 159 48 chr4 114989345 114990188 -69298474 + L2 LINE L2 1727 2475 -838 3064 107 9 0 chr4 114990188 114990646 -69298016 - L1PA13 LINE L1 0 6163 5702 675 320 159 48 chr4 114990646 114991204 -69297458 + L2 LINE L2 2475 3313 0 39 50 0 0 chr4 114991387 114991447 -69297215 + AT_rich Low_complexity Low_complexity 1 60 0 368 24 0 0 chr4 114991758 114991800 -69296862 + (A)n Simple_repeat Simple_repeat 1 42 0 193 333 12 0 chr4 114991937 114992018 -69296644 + MIR3 SINE MIR 126 207 -1 23 33 0 0 chr4 114992310 114992340 -69296322 + AT_rich Low_complexity Low_complexity 1 30 0 29 0 0 0 chr4 114992396 114992425 -69296237 + AT_rich Low_complexity Low_complexity 1 29 0 4635 207 68 24 chr4 114992429 114993754 -69294908 - L1M2 LINE L1 -712 5585 4214 235 220 127 25 chr4 114994334 114994452 -69294210 - MIR SINE MIR -7 255 126 1359 221 101 58 chr4 114997674 114998108 -69290554 - MLT2B1 LTR ERVL -67 453 1 846 204 0 12 chr4 114999754 114999916 -69288746 - FRAM SINE Alu -15 161 2 23 33 0 0 chr4 115000289 115000319 -69288343 + AT_rich Low_complexity Low_complexity 1 30 0 225 132 0 0 chr4 115000748 115000786 -69287876 + (CA)n Simple_repeat Simple_repeat 2 39 0 219 333 0 0 chr4 115001073 115001145 -69287517 + L2 LINE L2 1871 1942 -1372 29 47 0 0 chr4 115002302 115002345 -69286317 + AT_rich Low_complexity Low_complexity 1 43 0 691 221 125 9 chr4 115003608 115003831 -69284831 - L1MB7 LINE L1 -8 6166 5928 484 150 34 43 chr4 115004276 115004390 -69284272 + MER61E LTR ERV1 1 118 -482 264 131 180 0 chr4 115004536 115004597 -69284065 + MER51A LTR ERV1 209 280 -354 * 1219 191 78 20 chr4 115004568 115004914 -69283748 + LTR25 LTR ERV1 415 780 -14 486 294 34 19 chr4 115005471 115005736 -69282926 + LTR37B LTR ERV1 200 468 0 243 0 0 0 chr4 115006173 115006200 -69282462 + (TG)n Simple_repeat Simple_repeat 2 28 0 700 47 0 0 chr4 115006508 115006594 -69282068 - AluY SINE Alu -15 296 211 416 51 17 0 chr4 115006904 115006963 -69281699 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 287 343 29 12 chr4 115007309 115007481 -69281181 + MER31-int LTR ERV1 3887 4061 -875 29 60 0 0 chr4 115008336 115008386 -69280276 + AT_rich Low_complexity Low_complexity 1 50 0 917 206 0 11 chr4 115008900 115009084 -69279578 - MER83B LTR ERV1 -13 365 184 24 0 0 0 chr4 115009424 115009448 -69279214 + AT_rich Low_complexity Low_complexity 1 24 0 233 236 0 0 chr4 115009767 115009822 -69278840 + (TAA)n Simple_repeat Simple_repeat 1 55 0 208 271 90 68 chr4 115009844 115009977 -69278685 - MIR SINE MIR -31 231 96 490 318 14 14 chr4 115009987 115010135 -69278527 + MER77 LTR ERV1 5 152 -453 391 73 0 0 chr4 115010326 115010381 -69278281 - MLT2B1 LTR ERVL -2 518 464 308 213 32 69 chr4 115010407 115010526 -69278136 - L1MCa LINE L1 -1337 6985 1988 461 226 0 0 chr4 115010565 115010658 -69278004 - MLT2B2 LTR ERVL -40 475 383 392 378 0 0 chr4 115011840 115012004 -69276658 - MIR SINE MIR -26 236 73 213 39 0 0 chr4 115012141 115012167 -69276495 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 223 232 0 0 chr4 115012669 115012725 -69275937 + CT-rich Low_complexity Low_complexity 1 56 0 23 54 0 0 chr4 115014177 115014214 -69274448 + AT_rich Low_complexity Low_complexity 1 37 0 209 204 23 0 chr4 115014760 115014804 -69273858 + CT-rich Low_complexity Low_complexity 1 45 0 219 141 65 0 chr4 115014807 115014899 -69273763 + (TA)n Simple_repeat Simple_repeat 2 99 0 35 54 0 0 chr4 115015068 115015124 -69273538 + AT_rich Low_complexity Low_complexity 1 56 0 258 248 55 0 chr4 115015169 115015247 -69273415 + L1MC5 LINE L1 6640 6757 -1238 23 33 0 0 chr4 115015471 115015501 -69273161 + AT_rich Low_complexity Low_complexity 1 30 0 31 68 0 0 chr4 115015878 115015937 -69272725 + AT_rich Low_complexity Low_complexity 1 59 0 24 0 0 0 chr4 115016003 115016027 -69272635 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4 115016443 115016465 -69272197 + AT_rich Low_complexity Low_complexity 1 22 0 250 333 11 0 chr4 115016822 115016909 -69271753 + MLT1J2 LTR MaLR 349 436 -14 213 65 0 0 chr4 115017199 115017230 -69271432 + (TG)n Simple_repeat Simple_repeat 2 32 0 1290 217 132 33 chr4 115017617 115018041 -69270621 - MER31B LTR ERV1 0 466 1 23 0 0 0 chr4 115018732 115018755 -69269907 + AT_rich Low_complexity Low_complexity 1 23 0 24 53 0 0 chr4 115019871 115019909 -69268753 + AT_rich Low_complexity Low_complexity 1 38 0 188 65 0 32 chr4 115020197 115020228 -69268434 + (CATAT)n Simple_repeat Simple_repeat 3 32 0 387 254 118 0 chr4 115020338 115020448 -69268214 - MIR SINE MIR -59 203 81 180 111 0 0 chr4 115020593 115020620 -69268042 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 416 215 14 8 chr4 115020640 115020755 -69267907 + L1MA8 LINE L1 6010 6131 -169 352 309 151 24 chr4 115020945 115021317 -69267345 + L1ME LINE L1 5383 5801 -365 2401 151 147 0 chr4 115021406 115021855 -69266807 - L1P3 LINE L1 -5682 779 265 6757 128 4 5 chr4 115021864 115022937 -69265725 + L1P LINE L1 1319 2390 -3756 180 0 0 0 chr4 115024546 115024566 -69264096 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 586 131 0 0 chr4 115025792 115025891 -69262771 + L1PA15 LINE L1 6066 6164 -1 556 190 4 11 chr4 115025935 115026066 -69262596 + L1MA3 LINE L1 6168 6294 -6 25 0 0 0 chr4 115026945 115026970 -69261692 + AT_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chr4 115027428 115027470 -69261192 + AT_rich Low_complexity Low_complexity 1 42 0 471 132 0 0 chr4 115027675 115027766 -69260896 + (TA)n Simple_repeat Simple_repeat 2 92 0 22 56 0 0 chr4 115028082 115028118 -69260544 + AT_rich Low_complexity Low_complexity 1 36 0 2119 111 0 9 chr4 115028351 115028667 -69259995 - AluSq SINE Alu 0 313 1 1025 162 0 0 chr4 115028688 115028855 -69259807 - L1PA16 LINE L1 -9 6157 5991 526 106 12 12 chr4 115028870 115028955 -69259707 + L1P LINE L1 4488 4572 -1574 * 2182 119 8 17 chr4 115028951 115029312 -69259350 - L1PA16 LINE L1 -176 5990 5633 28 29 0 0 chr4 115030025 115030060 -69258602 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr4 115030354 115030380 -69258282 + AT_rich Low_complexity Low_complexity 1 26 0 49 18 0 0 chr4 115031156 115031212 -69257450 + AT_rich Low_complexity Low_complexity 1 56 0 271 273 206 10 chr4 115031295 115031504 -69257158 + L1MB7 LINE L1 5920 6169 -15 24 32 0 0 chr4 115031794 115031825 -69256837 + AT_rich Low_complexity Low_complexity 1 31 0 548 211 99 7 chr4 115032137 115032279 -69256383 - MER20 DNA MER1_type -33 186 32 26 0 0 0 chr4 115032973 115032999 -69255663 + AT_rich Low_complexity Low_complexity 1 26 0 42023 36 23 1 chr4 115033055 115039067 -69249595 - L1PA3 LINE L1 0 6155 6 2611 48 0 0 chr4 115040016 115040327 -69248335 + AluY SINE Alu 1 311 0 28 29 0 0 chr4 115042630 115042665 -69245997 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr4 115043608 115043631 -69245031 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr4 115044245 115044265 -69244397 + (T)n Simple_repeat Simple_repeat 1 20 0 414 0 0 0 chr4 115044393 115044439 -69244223 + (TG)n Simple_repeat Simple_repeat 1 46 0 362 56 42 14 chr4 115045101 115045172 -69243490 + (TA)n Simple_repeat Simple_repeat 2 74 0 592 177 190 0 chr4 115045930 115046088 -69242574 + L1MB4 LINE L1 5993 6180 0 259 161 0 97 chr4 115046290 115046352 -69242310 - MLT1G1 LTR MaLR -539 56 1 311 186 0 0 chr4 115046501 115046560 -69242102 + MSTC LTR MaLR 1 59 -369 2460 279 115 18 chr4 115046580 115047045 -69241617 + MSTD-int LTR MaLR 861 1279 -456 490 30 30 0 chr4 115047045 115047111 -69241551 + L1PA6 LINE L1 6087 6154 0 2460 279 115 18 chr4 115047111 115047442 -69241220 + MSTD-int LTR MaLR 1279 1735 0 1265 216 86 55 chr4 115047442 115047826 -69240836 + MSTD LTR MaLR 1 396 0 21 0 0 0 chr4 115047989 115048010 -69240652 + AT_rich Low_complexity Low_complexity 1 21 0 245 324 113 60 chr4 115051806 115052256 -69236406 + L2 LINE L2 2043 2516 -798 1790 311 140 19 chr4 115052305 115053182 -69235480 + L2 LINE L2 1138 2120 -1194 1686 282 129 37 chr4 115054359 115055287 -69233375 + L2 LINE L2 2099 3262 -51 352 381 49 51 chr4 115055378 115055963 -69232699 + L2 LINE L2 2682 3263 -9 30 59 0 0 chr4 115056398 115056449 -69232213 + AT_rich Low_complexity Low_complexity 1 51 0 452 329 150 14 chr4 115056518 115056731 -69231931 + MIR SINE MIR 20 261 -1 23 0 0 0 chr4 115057233 115057256 -69231406 + AT_rich Low_complexity Low_complexity 1 23 0 1133 242 34 20 chr4 115057520 115057645 -69231017 + AluJo SINE Alu 1 123 -179 320 43 22 0 chr4 115057645 115057691 -69230971 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1133 242 34 20 chr4 115057691 115057863 -69230799 + AluJo SINE Alu 123 302 0 22 0 0 0 chr4 115058491 115058513 -69230149 + AT_rich Low_complexity Low_complexity 1 22 0 1603 133 82 85 chr4 115059172 115059548 -69229114 - THE1C LTR MaLR 0 375 1 730 280 23 27 chr4 115060735 115060992 -69227670 + MIR SINE MIR 5 260 -2 23 33 0 0 chr4 115061678 115061708 -69226954 + AT_rich Low_complexity Low_complexity 1 30 0 753 214 58 132 chr4 115062561 115062954 -69225708 - MLT1A1 LTR MaLR 0 365 2 1087 100 6 0 chr4 115063333 115063493 -69225169 + L1PA13 LINE L1 6003 6163 0 35 24 0 0 chr4 115064855 115064897 -69223765 + AT_rich Low_complexity Low_complexity 1 42 0 24 67 0 0 chr4 115065065 115065110 -69223552 + AT_rich Low_complexity Low_complexity 1 45 0 242 278 19 9 chr4 115065335 115065443 -69223219 + LTR37B LTR ERV1 348 456 -12 1383 273 79 24 chr4 115065727 115065790 -69222872 - MLT1D LTR MaLR -10 495 437 10469 34 0 1 chr4 115065790 115067807 -69220855 - L1PA4 LINE L1 -7 6148 4132 1383 273 79 24 chr4 115067807 115068212 -69220450 - MLT1D LTR MaLR -68 437 1 349 350 89 60 chr4 115068316 115068765 -69219897 - L2 LINE L2 0 3313 2852 * 374 239 344 24 chr4 115068741 115069072 -69219590 - L2 LINE L2 -928 2386 1950 314 344 103 31 chr4 115069645 115069790 -69218872 - MIR SINE MIR -31 231 67 3133 143 2 49 chr4 115069790 115070343 -69218319 + MER1A DNA MER1_type 1 527 0 314 344 103 31 chr4 115070343 115070392 -69218270 - MIR SINE MIR -195 67 23 4691 207 10 5 chr4 115070690 115071628 -69217034 - L1MC1 LINE L1 -1 6332 5391 23 68 0 0 chr4 115071683 115071727 -69216935 + AT_rich Low_complexity Low_complexity 1 44 0 1385 269 19 38 chr4 115071862 115072335 -69216327 - MLT1C LTR MaLR 0 467 4 30881 117 14 53 chr4 115072609 115079004 -69209658 + L1PA7 LINE L1 12 6153 -1 2405 57 0 20 chr4 115079028 115079329 -69209333 + AluY SINE Alu 1 295 -16 779 187 37 5 chr4 115080746 115080960 -69207702 - L1MCa LINE L1 -4419 2007 1787 958 242 54 67 chr4 115081799 115082279 -69206383 - L1ME1 LINE L1 -3 6163 5690 2138 264 44 81 chr4 115082294 115084072 -69204590 + L1MC/D LINE L1 2531 4416 -1730 459 149 0 0 chr4 115084074 115084148 -69204514 - MSTA LTR MaLR -1 427 354 5628 142 10 49 chr4 115084148 115085163 -69203499 - THE1C-int LTR MaLR -605 975 1 1634 176 62 17 chr4 115085163 115085520 -69203142 - THE1C LTR MaLR 0 375 3 1666 269 46 34 chr4 115085529 115086529 -69202133 + L1MC/D LINE L1 4424 5442 -750 1548 229 81 7 chr4 115086529 115087022 -69201640 + L1MCa LINE L1 1991 2522 -3904 3535 210 35 34 chr4 115087076 115087424 -69201238 + L1PA12 LINE L1 975 1321 -6263 1943 69 0 121 chr4 115087424 115087756 -69200906 - AluY SINE Alu -9 292 1 3535 210 35 34 chr4 115087756 115088977 -69199685 + L1PA12 LINE L1 1321 3352 -4232 471 233 196 6 chr4 115139282 115139445 -69149217 + L2 LINE L2 2181 2374 -940 582 289 78 10 chr4 115139495 115139699 -69148963 - MIR SINE MIR -21 241 24 2663 183 42 41 chr4 115139699 115140289 -69148373 - LTR59 LTR ERV1 -6 591 1 805 339 130 21 chr4 115140305 115141162 -69147500 + L2 LINE L2 2370 3311 -2 203 100 25 25 chr4 115141203 115141243 -69147419 + (CA)n Simple_repeat Simple_repeat 2 41 0 1814 177 0 3 chr4 115141958 115142252 -69146410 - AluSx SINE Alu -19 293 1 540 181 8 9 chr4 115142619 115142754 -69145908 + L1MCb LINE L1 1098 1231 -4853 1288 208 45 35 chr4 115142775 115143178 -69145484 + L1MCb LINE L1 3246 3652 -2912 254 59 39 78 chr4 115143187 115143238 -69145424 + L1MC1 LINE L1 5279 5327 -857 578 212 0 0 chr4 115143239 115143357 -69145305 + L1MC1 LINE L1 5406 5523 -810 284 145 48 0 chr4 115143430 115143492 -69145170 + L1MCb LINE L1 1102 1166 -4879 3558 183 27 34 chr4 115143495 115144297 -69144365 + L1MC1 LINE L1 5529 6325 -8 1289 211 65 31 chr4 115145124 115145479 -69143183 - LTR52 LTR ERVL -38 383 17 1653 29 0 14 chr4 115145480 115145690 -69142972 + L1PA4 LINE L1 5949 6155 0 2020 141 2 100 chr4 115145863 115146044 -69142618 - MER57A LTR ERV1 0 403 206 1539 192 6 38 chr4 115146044 115146362 -69142300 + AluJo SINE Alu 3 310 -2 2020 141 2 100 chr4 115146362 115146619 -69142043 - MER57A LTR ERV1 -197 206 8 626 267 99 6 chr4 115148895 115149067 -69139595 + LTR16B LTR ERVL 3 190 -274 1776 152 61 30 chr4 115149099 115149461 -69139201 + THE1C LTR MaLR 3 375 0 2145 167 13 8 chr4 115149675 115150065 -69138597 + MER65A LTR ERV1 1 392 -53 3448 233 62 64 chr4 115150096 115151427 -69137235 + MER65A-int LTR ERV1 8 1335 -3536 3041 182 37 47 chr4 115151486 115152248 -69136414 + MER65A-int LTR ERV1 1358 2111 -2760 7827 208 111 3 chr4 115152269 115154213 -69134449 - L1MCb LINE L1 -1139 6426 4274 1972 150 137 11 chr4 115154213 115154593 -69134069 + MSTA LTR MaLR 1 428 0 4586 201 27 12 chr4 115154593 115155511 -69133151 + MSTA-int LTR MaLR 1 932 -719 356 153 0 0 chr4 115155512 115155571 -69133091 - MSTA LTR MaLR 0 428 370 2096 160 80 10 chr4 115155571 115155958 -69132704 - MSTA LTR MaLR -12 416 3 4432 152 14 10 chr4 115155960 115156677 -69131985 + MSTA-int LTR MaLR 861 1580 0 1976 147 137 11 chr4 115156677 115157057 -69131605 + MSTA LTR MaLR 1 428 0 5944 187 23 21 chr4 115157058 115158855 -69129807 - L1MCb LINE L1 -3288 4277 2475 231 262 16 0 chr4 115159232 115159293 -69129369 + (TA)n Simple_repeat Simple_repeat 1 62 0 316 187 13 13 chr4 115159293 115159368 -69129294 + L1MCa LINE L1 2002 2076 -4350 316 220 11 55 chr4 115159360 115159451 -69129211 - L1MC4 LINE L1 -1337 6705 6619 244 255 29 0 chr4 115159492 115159594 -69129068 + (TA)n Simple_repeat Simple_repeat 1 105 0 22 35 0 0 chr4 115159864 115159893 -69128769 + AT_rich Low_complexity Low_complexity 1 29 0 515 206 0 0 chr4 115160049 115160146 -69128516 - AluS SINE Alu -215 97 1 26 0 0 0 chr4 115161002 115161028 -69127634 + AT_rich Low_complexity Low_complexity 1 26 0 1629 180 75 63 chr4 115161402 115161829 -69126833 - MSTB1 LTR MaLR 0 432 1 32 0 0 0 chr4 115162169 115162201 -69126461 + AT_rich Low_complexity Low_complexity 1 32 0 795 307 67 0 chr4 115162392 115162646 -69126016 + LTR16A LTR ERVL 180 450 0 597 320 54 19 chr4 115162804 115163063 -69125599 - L1MCb LINE L1 -5648 1398 1131 252 221 242 0 chr4 115163746 115163841 -69124821 + L1MC5 LINE L1 7706 7823 -138 626 162 37 7 chr4 115164496 115164632 -69124030 + L1MA6 LINE L1 6161 6300 0 243 340 105 25 chr4 115164833 115164995 -69123667 + L2 LINE L2 3098 3272 0 25 31 0 0 chr4 115165121 115165153 -69123509 + AT_rich Low_complexity Low_complexity 1 32 0 2381 72 13 0 chr4 115165474 115165781 -69122881 - AluY SINE Alu 0 311 1 30 0 0 0 chr4 115166567 115166597 -69122065 + AT_rich Low_complexity Low_complexity 1 30 0 410 306 45 8 chr4 115168024 115168158 -69120504 + L2 LINE L2 3165 3303 -10 624 166 7 35 chr4 115168190 115168335 -69120327 + L1MA5 LINE L1 6160 6300 0 240 250 16 0 chr4 115168339 115168403 -69120259 + (TAAA)n Simple_repeat Simple_repeat 2 66 0 2266 85 0 25 chr4 115168550 115168869 -69119793 + AluY SINE Alu 1 311 0 33 80 0 0 chr4 115169597 115169672 -69118990 + AT_rich Low_complexity Low_complexity 1 75 0 2630 48 0 0 chr4 115170618 115170928 -69117734 - AluY SINE Alu 0 311 2 192 184 0 0 chr4 115171202 115171251 -69117411 + CT-rich Low_complexity Low_complexity 2 50 0 303 283 164 7 chr4 115171255 115171407 -69117255 + L2 LINE L2 2555 2730 -584 231 36 0 0 chr4 115172001 115172029 -69116633 + (TG)n Simple_repeat Simple_repeat 2 29 0 210 154 0 0 chr4 115172137 115172176 -69116486 + (TA)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr4 115172796 115172817 -69115845 + AT_rich Low_complexity Low_complexity 1 21 0 309 258 121 23 chr4 115173318 115173450 -69115212 - L1MC4 LINE L1 -792 7250 7106 551 200 0 0 chr4 115173519 115173624 -69115038 - FRAM SINE Alu -1 175 71 533 169 0 68 chr4 115173654 115173772 -69114890 - FLAM_C SINE Alu -22 121 12 250 294 20 29 chr4 115173999 115174101 -69114561 - L1MC5 LINE L1 -1101 6860 6760 235 293 40 50 chr4 115174096 115174195 -69114467 - L1MC4a LINE L1 -1093 6715 6618 * 432 0 0 0 chr4 115174203 115174251 -69114411 + (TA)n Simple_repeat Simple_repeat 1 48 0 403 283 42 12 chr4 115174629 115174795 -69113867 - L1MC4a LINE L1 -1968 5840 5670 21 0 0 0 chr4 115175478 115175499 -69113163 + AT_rich Low_complexity Low_complexity 1 21 0 1172 271 127 6 chr4 115175927 115176430 -69112232 - L1ME1 LINE L1 -46 6120 5737 1088 215 8 58 chr4 115176436 115176696 -69111966 + AluJo SINE Alu 8 254 -58 2151 118 3 10 chr4 115176705 115177018 -69111644 - AluY SINE Alu 0 311 1 241 296 82 77 chr4 115177028 115177224 -69111438 + L1MCb LINE L1 603 799 -5623 744 315 58 3 chr4 115177754 115178100 -69110562 + L1MCb LINE L1 1153 1517 -4906 * 1674 200 46 18 chr4 115178099 115178489 -69110173 + L1MA7 LINE L1 5881 6281 -10 1726 171 7 17 chr4 115179245 115179538 -69109124 - AluJb SINE Alu -22 290 1 27 62 0 0 chr4 115179677 115179725 -69108937 + AT_rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr4 115180462 115180486 -69108176 + AT_rich Low_complexity Low_complexity 1 24 0 1796 126 9 71 chr4 115180786 115181111 -69107551 - AluSx SINE Alu -7 305 1 2794 84 0 0 chr4 115181147 115181504 -69107158 - THE1B LTR MaLR -7 357 1 216 186 85 17 chr4 115181734 115181793 -69106869 + MIR SINE MIR 198 260 -2 467 278 46 13 chr4 115182044 115182195 -69106467 - MIR SINE MIR -105 157 2 213 299 155 0 chr4 115182254 115182351 -69106311 - L2 LINE L2 0 3313 3202 1696 175 23 13 chr4 115183396 115183704 -69104958 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr4 115184484 115184506 -69104156 + AT_rich Low_complexity Low_complexity 1 22 0 236 178 10 129 chr4 115184516 115184617 -69104045 - L1MC4 LINE L1 -1340 6702 6614 * 278 206 22 43 chr4 115184539 115184631 -69104031 + L1MC4 LINE L1 6614 6703 -1339 210 244 0 0 chr4 115184632 115184673 -69103989 + (TATG)n Simple_repeat Simple_repeat 4 44 0 2185 179 130 19 chr4 115184675 115185144 -69103518 - LTR8A LTR ERV1 -206 521 1 8360 215 31 8 chr4 115185367 115188107 -69100555 + L1PA16 LINE L1 3264 6061 -105 336 136 17 0 chr4 115188108 115188167 -69100495 + L1PA16 LINE L1 6098 6157 -9 2197 103 0 35 chr4 115188244 115188563 -69100099 - AluSg1 SINE Alu -1 308 1 28 29 0 0 chr4 115188641 115188676 -69099986 + AT_rich Low_complexity Low_complexity 1 35 0 468 313 34 24 chr4 115190438 115190646 -69098016 + MIR SINE MIR 2 211 -51 196 385 77 22 chr4 115191125 115191307 -69097355 + L3b LINE CR1 1277 1468 -115 6702 62 13 9 chr4 115191574 115192597 -69096065 + L1PA7 LINE L1 5126 6153 -1 2432 183 28 8 chr4 115193970 115194830 -69093832 + L1M1 LINE L1 3183 4062 -3503 1198 207 67 36 chr4 115194836 115195041 -69093621 + L1M1 LINE L1 4283 4480 -3085 1540 228 0 0 chr4 115195041 115195330 -69093332 - AluJb SINE Alu -21 291 3 1198 207 67 36 chr4 115195330 115195569 -69093093 + L1M1 LINE L1 4480 4741 -2824 25 51 0 0 chr4 115196167 115196206 -69092456 + AT_rich Low_complexity Low_complexity 1 39 0 1775 209 8 2 chr4 115196284 115196682 -69091980 + L1M1 LINE L1 4715 5114 -2451 1166 207 23 35 chr4 115196701 115196983 -69091679 + AluJb SINE Alu 31 309 0 2047 161 76 42 chr4 115196983 115197055 -69091607 + L1M1 LINE L1 5114 5182 -2542 2202 79 0 4 chr4 115197055 115197363 -69091299 + AluSc SINE Alu 1 307 0 2047 161 76 42 chr4 115197363 115197782 -69090880 + L1M1 LINE L1 5182 7079 -645 450 400 31 3 chr4 115199114 115199481 -69089181 + HERV16 LTR ERVL 2740 3086 -1910 3343 187 34 73 chr4 115199588 115199893 -69088769 - L1MB3 LINE L1 -3 6180 5864 1579 171 139 78 chr4 115199893 115199986 -69088676 - MLT2B1 LTR ERVL 0 520 434 393 22 0 0 chr4 115199986 115200032 -69088630 + (CA)n Simple_repeat Simple_repeat 1 46 0 1579 171 139 78 chr4 115200032 115200428 -69088234 - MLT2B1 LTR ERVL -86 434 1 3343 187 34 73 chr4 115200428 115200984 -69087678 - L1MB3 LINE L1 -319 5864 5353 612 270 17 17 chr4 115201337 115201515 -69087147 + MER5B DNA MER1_type 1 178 0 24 85 0 0 chr4 115202724 115202783 -69085879 + AT_rich Low_complexity Low_complexity 1 59 0 684 218 109 0 chr4 115203654 115203847 -69084815 - MER20 DNA MER1_type -4 215 2 25 0 0 0 chr4 115204526 115204551 -69084111 + AT_rich Low_complexity Low_complexity 1 25 0 1230 52 0 0 chr4 115204893 115205047 -69083615 - L1PA6 LINE L1 -8 6146 5993 21 0 0 0 chr4 115206093 115206114 -69082548 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 115206597 115206619 -69082043 + AT_rich Low_complexity Low_complexity 1 22 0 936 251 14 7 chr4 115206891 115207170 -69081492 - L1MC2 LINE L1 0 6344 6064 1217 132 21 0 chr4 115207625 115207815 -69080847 - L1P LINE L1 -2233 3913 3720 9415 163 37 17 chr4 115207818 115209833 -69078829 - Tigger1 DNA MER2_type -354 2064 1 294 227 0 0 chr4 115209861 115209936 -69078726 + (CATATA)n Simple_repeat Simple_repeat 2 76 0 733 114 17 148 chr4 115209954 115210130 -69078532 - Tigger1 DNA MER2_type -923 1495 1343 263 94 0 19 chr4 115210126 115210179 -69078483 + LTR66 LTR ERVL 388 439 -171 * 225 255 31 10 chr4 115210179 115210277 -69078385 + (TA)n Simple_repeat Simple_repeat 2 101 0 276 241 23 23 chr4 115210277 115210364 -69078298 - L1MC4 LINE L1 -1339 6703 6617 430 289 30 51 chr4 115211032 115211229 -69077433 + L1ME LINE L1 5538 5730 -391 27 0 0 0 chr4 115211346 115211373 -69077289 + AT_rich Low_complexity Low_complexity 1 27 0 693 65 0 0 chr4 115211884 115211977 -69076685 + L1PA3 LINE L1 6063 6155 0 240 35 0 0 chr4 115212579 115212608 -69076054 + (CA)n Simple_repeat Simple_repeat 2 30 0 326 292 106 0 chr4 115214652 115214813 -69073849 + MER112 DNA MER1_type 70 247 -13 27 29 0 0 chr4 115215207 115215241 -69073421 + AT_rich Low_complexity Low_complexity 1 34 0 591 330 54 45 chr4 115216697 115217272 -69071390 + HAL1 LINE L1 385 964 -1543 399 297 45 54 chr4 115217304 115217526 -69071136 + HAL1 LINE L1 1056 1275 -1232 1840 276 44 22 chr4 115217555 115218142 -69070520 + L1M4 LINE L1 3817 4431 -1715 2004 191 40 24 chr4 115218142 115218567 -69070095 + MSTB1 LTR MaLR 1 432 0 1840 276 44 22 chr4 115218567 115218845 -69069817 + L1M4 LINE L1 4431 4701 -1445 2323 148 53 12 chr4 115220326 115220737 -69067925 - MSTA LTR MaLR 0 428 1 249 33 0 0 chr4 115221161 115221191 -69067471 + (CA)n Simple_repeat Simple_repeat 1 30 0 207 277 0 0 chr4 115221256 115221303 -69067359 + (CTA)n Simple_repeat Simple_repeat 1 47 0 589 287 46 0 chr4 115222827 115223001 -69065661 - MLT1D LTR MaLR -323 182 1 252 0 0 0 chr4 115223138 115223166 -69065496 + (TA)n Simple_repeat Simple_repeat 1 28 0 254 351 8 60 chr4 115223415 115223549 -69065113 - MIR SINE MIR -116 146 20 346 302 45 99 chr4 115224951 115225193 -69063469 + MIR SINE MIR 34 261 -1 4006 291 71 14 chr4 115226304 115228206 -69060456 - L1M4c LINE L1 -4787 2172 154 22 35 0 0 chr4 115228231 115228260 -69060402 + AT_rich Low_complexity Low_complexity 1 29 0 1105 226 30 36 chr4 115228260 115228565 -69060097 - L1PB4 LINE L1 -1 6155 5853 386 255 11 0 chr4 115228563 115228657 -69060005 - L1M4b LINE L1 -5758 1101 1007 * 3088 177 34 5 chr4 115228652 115229767 -69058895 - L1PB4 LINE L1 -304 5852 4709 312 252 0 96 chr4 115229762 115229877 -69058785 - L1M4c LINE L1 -6743 116 13 * 709 262 95 55 chr4 115230096 115230665 -69057997 + L1MEc LINE L1 819 1410 -5153 1434 297 78 27 chr4 115230674 115231693 -69056969 + L1MEc LINE L1 1295 2519 -4044 322 260 14 14 chr4 115232140 115232365 -69056297 + CT-rich Low_complexity Low_complexity 1 225 0 356 171 0 43 chr4 115234265 115234335 -69054327 + Tigger2 DNA MER2_type 2 68 -2650 2068 187 50 2 chr4 115234343 115234745 -69053917 + Tigger2 DNA MER2_type 2298 2718 0 415 341 75 15 chr4 115234923 115235322 -69053340 - L1ME3 LINE L1 -231 6000 5578 26 0 0 0 chr4 115235333 115235359 -69053303 + AT_rich Low_complexity Low_complexity 1 26 0 311 119 0 17 chr4 115236176 115236235 -69052427 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 375 296 35 24 chr4 115236506 115236675 -69051987 + ERVL LTR ERVL 4910 5080 -684 305 295 11 0 chr4 115236691 115236786 -69051876 + MER77 LTR ERV1 463 558 -47 1347 239 52 0 chr4 115236788 115237157 -69051505 - L1MC3 LINE L1 -1113 6672 6285 415 238 9 9 chr4 115237160 115237265 -69051397 - L1MCa LINE L1 -5962 464 360 30 59 0 0 chr4 115237900 115237951 -69050711 + AT_rich Low_complexity Low_complexity 1 51 0 1025 178 80 20 chr4 115239521 115239812 -69048850 - THE1C LTR MaLR 0 375 1 9255 139 49 7 chr4 115239822 115241296 -69047366 - THE1B-int LTR MaLR -10 1570 35 779 255 119 35 chr4 115241316 115241712 -69046950 - MER50 LTR ERV1 -296 438 10 389 143 0 39 chr4 115241720 115241797 -69046865 + THE1C-int LTR MaLR 1507 1580 0 1706 170 64 19 chr4 115241797 115242156 -69046506 + THE1C LTR MaLR 1 375 0 2116 169 35 35 chr4 115242317 115242586 -69046076 - Tigger2a DNA MER2_type -2275 433 162 2251 141 31 3 chr4 115242586 115242940 -69045722 - THE1B LTR MaLR 0 364 1 2116 169 35 35 chr4 115242940 115243103 -69045559 - Tigger2a DNA MER2_type -2545 163 1 222 91 0 0 chr4 115243597 115243630 -69045032 + (CA)n Simple_repeat Simple_repeat 1 33 0 1503 132 68 65 chr4 115243929 115244239 -69044423 - MER44D DNA MER2_type 0 609 29 1721 171 53 31 chr4 115245216 115245572 -69043090 + THE1B LTR MaLR 1 364 0 420 282 57 17 chr4 115246093 115246378 -69042284 - L1ME3 LINE L1 -667 5564 5267 390 279 89 56 chr4 115246459 115246770 -69041892 - L1ME3 LINE L1 -4313 1903 1444 1987 130 32 40 chr4 115247076 115247454 -69041208 - THE1C LTR MaLR 0 375 1 49 18 0 0 chr4 115247934 115247990 -69040672 + AT_rich Low_complexity Low_complexity 1 56 0 293 292 39 69 chr4 115248799 115248929 -69039733 - L2 LINE L2 -1 3312 3187 180 0 0 0 chr4 115250457 115250477 -69038185 + (AAATG)n Simple_repeat Simple_repeat 3 22 0 1407 211 20 23 chr4 115250688 115250992 -69037670 + AluJo SINE Alu 3 305 -7 303 237 129 22 chr4 115251274 115251413 -69037249 - Zaphod DNA AcHobo 0 4031 3878 810 333 87 19 chr4 115251451 115251866 -69036796 - Zaphod DNA AcHobo -3466 565 123 234 0 0 0 chr4 115251895 115251921 -69036741 + (TG)n Simple_repeat Simple_repeat 1 26 0 4705 50 3 0 chr4 115251963 115252548 -69036114 + LTR14C LTR ERVK 1 587 0 432 151 38 75 chr4 115252935 115253070 -69035592 - AluSg/x SINE Alu 0 311 181 22 91 0 0 chr4 115253171 115253204 -69035458 + AT_rich Low_complexity Low_complexity 1 33 0 418 129 21 65 chr4 115253208 115253394 -69035268 + (TA)n Simple_repeat Simple_repeat 2 179 0 21 0 0 0 chr4 115253396 115253417 -69035245 + AT_rich Low_complexity Low_complexity 1 21 0 2800 168 12 2 chr4 115253417 115253935 -69034727 + L1MA3 LINE L1 5782 6304 -1 297 326 253 11 chr4 115254252 115254430 -69034232 - MIR SINE MIR -41 221 1 225 262 37 93 chr4 115254574 115254681 -69033981 + MIR SINE MIR 106 206 -56 26 50 0 0 chr4 115254695 115254735 -69033927 + AT_rich Low_complexity Low_complexity 1 40 0 222 192 0 0 chr4 115255175 115255227 -69033435 + (TG)n Simple_repeat Simple_repeat 1 52 0 581 250 0 0 chr4 115256103 115256223 -69032439 - FLAM_A SINE Alu -12 121 2 33 43 0 0 chr4 115256510 115256557 -69032105 + AT_rich Low_complexity Low_complexity 1 47 0 284 276 112 66 chr4 115257066 115257262 -69031400 + MIR SINE MIR 58 262 0 2328 175 43 26 chr4 115259725 115260194 -69028468 - MER31A LTR ERV1 -8 477 1 29 47 0 0 chr4 115260761 115260804 -69027858 + AT_rich Low_complexity Low_complexity 1 43 0 180 111 0 0 chr4 115262137 115262164 -69026498 + (GAA)n Simple_repeat Simple_repeat 2 28 0 224 253 35 11 chr4 115262168 115262255 -69026407 + GA-rich Low_complexity Low_complexity 2 90 0 209 293 49 12 chr4 115263460 115263542 -69025120 + L2 LINE L2 1658 1742 -1572 202 146 0 24 chr4 115265429 115265470 -69023192 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 33 66 0 0 chr4 115265612 115265673 -69022989 + AT_rich Low_complexity Low_complexity 1 61 0 321 239 13 119 chr4 115265977 115266136 -69022526 - L2 LINE L2 -4 3309 3168 648 172 19 57 chr4 115266154 115266311 -69022351 + AluJo SINE Alu 16 166 -146 4856 131 9 9 chr4 115266311 115267098 -69021564 - L1P LINE L1 -1254 4892 4106 219 129 65 16 chr4 115267346 115267408 -69021254 + (TA)n Simple_repeat Simple_repeat 1 65 0 21 36 0 0 chr4 115267776 115267804 -69020858 + AT_rich Low_complexity Low_complexity 1 28 0 971 237 5 0 chr4 115268802 115268992 -69019670 - MER20 DNA MER1_type 0 219 29 289 137 0 0 chr4 115269781 115269832 -69018830 - MER67D LTR ERV1 -154 360 310 1532 143 134 38 chr4 115269891 115270233 -69018429 - THE1C LTR MaLR 0 375 1 951 219 69 82 chr4 115270233 115270539 -69018123 - MER67D LTR ERV1 -210 304 3 3246 169 28 63 chr4 115270972 115271348 -69017314 - L1MA6 LINE L1 0 6300 5961 7623 29 0 1 chr4 115271348 115272823 -69015839 + L1PA3 LINE L1 4682 6155 0 3246 169 28 63 chr4 115272823 115273170 -69015492 - L1MA6 LINE L1 -339 5961 5603 524 126 11 23 chr4 115273728 115273815 -69014847 - THE1C LTR MaLR -26 349 264 4212 230 26 46 chr4 115274318 115275156 -69013506 + MER45B DNA AcHobo 1 816 -765 2181 102 3 0 chr4 115275156 115275486 -69013176 - AluSq SINE Alu 0 331 1 4212 230 26 46 chr4 115275486 115275694 -69012968 + MER45B DNA AcHobo 816 1027 -13 1653 201 22 20 chr4 115277253 115277528 -69011134 - L1MB2 LINE L1 -5 6166 5888 1977 110 0 49 chr4 115277528 115277836 -69010826 - AluSg SINE Alu -17 293 1 1653 201 22 20 chr4 115277836 115277969 -69010693 - L1MB2 LINE L1 -283 5888 5757 2841 194 25 14 chr4 115278422 115279521 -69009141 - L1MB2 LINE L1 -424 5747 4639 658 271 21 90 chr4 115279748 115280080 -69008582 - L1 LINE L1 -1322 4824 4516 234 0 0 0 chr4 115280337 115280363 -69008299 + (CA)n Simple_repeat Simple_repeat 2 27 0 1454 258 45 33 chr4 115280783 115281232 -69007430 - MLT1C LTR MaLR -6 461 8 266 345 17 0 chr4 115281553 115281672 -69006990 + CT-rich Low_complexity Low_complexity 5 125 0 268 325 40 8 chr4 115283361 115283487 -69005175 + ERVL LTR ERVL 1175 1304 -4460 1062 118 20 0 chr4 115283644 115283796 -69004866 + AluSg/x SINE Alu 142 296 -16 23 0 0 0 chr4 115286053 115286076 -69002586 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr4 115286358 115286384 -69002278 + AT_rich Low_complexity Low_complexity 1 26 0 2229 108 0 13 chr4 115286437 115286743 -69001919 - AluSc SINE Alu -7 302 1 27 29 0 0 chr4 115287669 115287703 -69000959 + AT_rich Low_complexity Low_complexity 1 34 0 376 298 207 39 chr4 115289129 115289337 -68999325 + MLT1H LTR MaLR 123 365 -184 699 300 159 27 chr4 115289752 115290235 -68998427 + MLT1H LTR MaLR 1 547 -2 2317 184 65 0 chr4 115290355 115290436 -68998226 + MER6 DNA MER2_type 135 209 -656 297 0 0 0 chr4 115290436 115290469 -68998193 + (TG)n Simple_repeat Simple_repeat 1 33 0 2317 184 65 0 chr4 115290469 115290821 -68997841 + MER6 DNA MER2_type 209 856 -9 2173 113 3 6 chr4 115290821 115291132 -68997530 + AluSx SINE Alu 1 310 -2 24 0 0 0 chr4 115291287 115291311 -68997351 + AT_rich Low_complexity Low_complexity 1 24 0 2002 128 17 0 chr4 115291376 115291665 -68996997 + AluSx SINE Alu 1 294 -18 21 36 0 0 chr4 115291995 115292023 -68996639 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr4 115292466 115292492 -68996170 + AT_rich Low_complexity Low_complexity 1 26 0 25 90 0 0 chr4 115292518 115292585 -68996077 + AT_rich Low_complexity Low_complexity 1 67 0 1589 173 44 0 chr4 115292731 115293029 -68995633 - AluJb SINE Alu 0 310 1 2440 70 0 0 chr4 115293592 115293894 -68994768 - AluY SINE Alu -9 302 1 258 323 79 48 chr4 115294011 115294200 -68994462 - L3b LINE CR1 -19 1564 1370 359 331 28 61 chr4 115294223 115294404 -68994258 + MIR SINE MIR 16 190 -72 580 365 148 32 chr4 115294562 115295364 -68993298 - L3 LINE CR1 -352 1225 331 330 404 44 31 chr4 115295474 115295699 -68992963 + L2 LINE L2 2554 2781 -533 216 86 0 0 chr4 115296144 115296179 -68992483 + (CA)n Simple_repeat Simple_repeat 2 36 0 2387 122 8 24 chr4 115296212 115296582 -68992080 + THE1B LTR MaLR 1 364 0 448 318 81 27 chr4 115297219 115297621 -68991041 + MLT1J2 LTR MaLR 1 450 0 215 387 59 10 chr4 115297969 115298173 -68990489 + L2 LINE L2 1061 1274 -2040 197 288 17 17 chr4 115299264 115299323 -68989339 - L2 LINE L2 -5 3267 3209 1208 132 46 14 chr4 115299864 115300083 -68988579 - L1MA5A LINE L1 -35 6262 6037 238 318 8 16 chr4 115300256 115300385 -68988277 - MLT2E LTR ERVL -18 610 483 330 286 16 43 chr4 115300800 115300985 -68987677 + L1M4 LINE L1 2281 2460 -3686 244 186 68 17 chr4 115301013 115301072 -68987590 - LTR67 LTR ERVL -6 551 490 1997 138 0 0 chr4 115301425 115301715 -68986947 + AluSx SINE Alu 1 290 -22 577 129 11 48 chr4 115301718 115301904 -68986758 + (TA)n Simple_repeat Simple_repeat 2 180 0 1713 165 19 50 chr4 115302923 115303244 -68985418 + AluSx SINE Alu 1 311 -1 255 206 43 65 chr4 115303726 115303818 -68984844 + LTR67 LTR ERVL 462 551 -6 343 304 24 24 chr4 115303846 115304243 -68984419 - L1MEd LINE L1 -3686 2443 1993 302 291 113 34 chr4 115304628 115305183 -68983479 - L1MEd LINE L1 -4773 1537 904 229 358 110 42 chr4 115305540 115305735 -68982927 + L2 LINE L2 2144 2324 -990 3877 102 0 5 chr4 115305735 115306296 -68982366 - L1PA13 LINE L1 0 6163 5606 229 358 110 42 chr4 115306296 115306763 -68981899 + L2 LINE L2 2324 2851 -463 230 361 90 8 chr4 115307036 115307158 -68981504 + L2 LINE L2 3136 3267 -5 278 333 124 0 chr4 115309672 115309777 -68978885 + L2 LINE L2 3147 3264 -8 351 254 52 122 chr4 115310951 115311294 -68977368 + L2 LINE L2 1747 2065 -1249 677 324 31 34 chr4 115311304 115311597 -68977065 + L2 LINE L2 2014 2305 -1009 215 340 83 21 chr4 115311974 115312118 -68976544 - L2 LINE L2 -6 3307 3155 21 36 0 0 chr4 115312491 115312519 -68976143 + AT_rich Low_complexity Low_complexity 1 28 0 1504 213 30 18 chr4 115312782 115313120 -68975542 + L1MC1 LINE L1 5990 6331 -2 208 309 16 16 chr4 115313146 115313272 -68975390 + (TA)n Simple_repeat Simple_repeat 1 126 0 193 365 109 0 chr4 115313307 115313444 -68975218 - MIR SINE MIR -56 206 55 2364 91 0 0 chr4 115314868 115315177 -68973485 + AluSc SINE Alu 1 309 0 21 0 0 0 chr4 115315502 115315523 -68973139 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr4 115317685 115317719 -68970943 + AT_rich Low_complexity Low_complexity 1 34 0 754 233 29 69 chr4 115319904 115320149 -68968513 - MIR SINE MIR -27 235 1 465 273 47 63 chr4 115320632 115320926 -68967736 - MLT1G LTR MaLR -277 253 1 33 25 0 0 chr4 115322282 115322322 -68966340 + AT_rich Low_complexity Low_complexity 1 40 0 22 56 0 0 chr4 115322563 115322599 -68966063 + AT_rich Low_complexity Low_complexity 1 36 0 701 307 89 23 chr4 115322620 115323062 -68965600 - L2 LINE L2 -81 3232 2763 28 48 0 0 chr4 115324066 115324108 -68964554 + AT_rich Low_complexity Low_complexity 1 42 0 2164 104 0 0 chr4 115324166 115324453 -68964209 - AluSc SINE Alu -22 287 1 691 205 0 0 chr4 115324493 115324620 -68964042 + FLAM_C SINE Alu 1 127 -16 477 279 80 20 chr4 115325107 115325308 -68963354 - MIR SINE MIR -10 252 40 305 177 81 0 chr4 115325942 115326004 -68962658 + L2 LINE L2 3204 3270 -2 21 0 0 0 chr4 115326062 115326083 -68962579 + AT_rich Low_complexity Low_complexity 1 21 0 188 379 112 6 chr4 115326192 115326353 -68962309 - L3 LINE CR1 -53 1524 1347 1154 230 36 97 chr4 115326945 115327337 -68961325 + MLT1A2 LTR MaLR 7 374 0 34 65 0 0 chr4 115327492 115327554 -68961108 + AT_rich Low_complexity Low_complexity 1 62 0 507 342 157 40 chr4 115327614 115328143 -68960519 + MLT2E LTR ERVL 36 626 -2 630 172 16 0 chr4 115328659 115328781 -68959881 - L1MB7 LINE L1 -19 6165 6042 326 277 32 0 chr4 115328787 115328881 -68959781 - L1MB7 LINE L1 -123 6061 5965 773 312 39 4 chr4 115329163 115329394 -68959268 + MLT1H LTR MaLR 81 319 -230 314 266 61 68 chr4 115329483 115329620 -68959042 - L1MB7 LINE L1 -464 5706 5570 2103 127 10 0 chr4 115329620 115329927 -68958735 + AluSx SINE Alu 1 310 -2 314 266 61 68 chr4 115329927 115330082 -68958580 - L1MB7 LINE L1 -600 5570 5416 243 267 0 13 chr4 115330287 115330362 -68958300 + (CATA)n Simple_repeat Simple_repeat 3 76 0 1943 216 28 34 chr4 115330656 115331164 -68957498 - MLT1D LTR MaLR 0 505 1 189 0 0 0 chr4 115331551 115331572 -68957090 + (TTAA)n Simple_repeat Simple_repeat 3 23 0 715 177 102 34 chr4 115331572 115331711 -68956951 - FRAM SINE Alu -163 149 1 29 0 0 0 chr4 115332652 115332681 -68955981 + AT_rich Low_complexity Low_complexity 1 29 0 4780 226 48 46 chr4 115333847 115334719 -68953943 + L1MC3 LINE L1 4722 4450 -1696 2538 46 7 3 chr4 115334719 115335024 -68953638 - AluY SINE Alu -5 306 1 4780 226 48 46 chr4 115335024 115335982 -68952680 + L1MC3 LINE L1 4449 5403 -743 1455 241 27 16 chr4 115335988 115336353 -68952309 - MLT1A2 LTR MaLR -5 369 1 213 267 52 9 chr4 115336373 115336489 -68952173 + (TA)n Simple_repeat Simple_repeat 2 122 0 1462 224 51 28 chr4 115336515 115336947 -68951715 + L1MC3 LINE L1 6603 7044 -741 245 203 40 54 chr4 115337247 115337321 -68951341 + MLT1F1 LTR MaLR 35 107 -460 893 201 24 5 chr4 115337433 115337642 -68951020 + L1MC3 LINE L1 7233 7445 -340 3121 195 43 3 chr4 115337676 115338280 -68950382 + MER39 LTR ERV1 75 702 -5 1161 226 35 13 chr4 115338290 115338608 -68950054 + L1MC3 LINE L1 7461 7785 0 1419 200 85 21 chr4 115339327 115339702 -68948960 + MLT1C LTR MaLR 67 465 -2 364 232 21 11 chr4 115339724 115339819 -68948843 + MER58C DNA MER1_type 120 215 0 444 298 156 44 chr4 115339989 115340399 -68948263 - L1MEc LINE L1 -5911 485 30 224 133 61 10 chr4 115341120 115341218 -68947444 + (TA)n Simple_repeat Simple_repeat 1 103 0 223 182 0 0 chr4 115341441 115341485 -68947177 + CT-rich Low_complexity Low_complexity 1 44 0 221 405 9 0 chr4 115342191 115342302 -68946360 + MER5A DNA MER1_type 78 189 0 30 69 0 0 chr4 115342791 115342849 -68945813 + AT_rich Low_complexity Low_complexity 1 58 0 1293 209 54 9 chr4 115342855 115343204 -68945458 - L1MB8 LINE L1 -80 6098 5734 * 1559 252 119 60 chr4 115343201 115344989 -68943673 + L1ME2 LINE L1 4203 6097 -67 28 0 0 0 chr4 115345145 115345173 -68943489 + AT_rich Low_complexity Low_complexity 1 28 0 5221 45 1 1 chr4 115345247 115345909 -68942753 - L1P LINE L1 -2194 3952 3291 5391 30 0 0 chr4 115345909 115346538 -68942124 + L1PA4 LINE L1 5515 6143 -12 22 35 0 0 chr4 115346626 115346655 -68942007 + AT_rich Low_complexity Low_complexity 1 29 0 1828 146 27 46 chr4 115347105 115347476 -68941186 - THE1B LTR MaLR 0 364 1 11401 106 2 7 chr4 115347476 115347632 -68941030 - THE1B-int LTR MaLR 0 1580 1425 6053 78 0 13 chr4 115347632 115348422 -68940240 - LTR17 LTR ERV1 0 780 1 11401 106 2 7 chr4 115348422 115349853 -68938809 - THE1B-int LTR MaLR -155 1425 1 1725 152 16 58 chr4 115349853 115350229 -68938433 - THE1B LTR MaLR 0 364 5 15265 137 6 4 chr4 115350523 115352789 -68935873 - MER52-int LTR ERV1 -2667 4424 2154 295 174 81 81 chr4 115352794 115352880 -68935782 - MER52A LTR ERV1 -455 1300 1215 * 441 206 22 59 chr4 115352862 115352998 -68935664 - LTR28 LTR ERV1 -304 716 586 * 1058 187 36 92 chr4 115352987 115353454 -68935208 - MER52A LTR ERV1 -405 1350 773 13974 159 46 19 chr4 115353632 115354804 -68933858 + Tigger4(Zombi) DNA MER2_type 1 1140 -1591 1582 113 14 0 chr4 115354804 115355016 -68933646 - AluSx SINE Alu -97 215 1 13974 159 46 19 chr4 115355016 115355313 -68933349 + Tigger4(Zombi) DNA MER2_type 1140 1428 -1303 2153 119 0 0 chr4 115355313 115355607 -68933055 - AluSg SINE Alu -16 294 1 13974 159 46 19 chr4 115355607 115356796 -68931866 + Tigger4(Zombi) DNA MER2_type 1428 2731 0 22 80 0 0 chr4 115356881 115356931 -68931731 + AT_rich Low_complexity Low_complexity 1 50 0 1572 186 6 6 chr4 115357110 115357421 -68931241 - AluY SINE Alu 0 311 1 563 175 0 0 chr4 115357555 115357652 -68931010 + MER11C LTR ERVK 1 97 -974 2320 83 7 7 chr4 115357752 115358052 -68930610 - AluY SINE Alu -11 300 1 8578 58 4 2 chr4 115358186 115359255 -68929407 + MER11C LTR ERVK 1 1071 0 1001 236 98 46 chr4 115359307 115359785 -68928877 - MLT1D LTR MaLR -2 503 1 1480 197 195 54 chr4 115359842 115360380 -68928282 + LTR18B LTR ERVL 1 614 0 21 71 0 0 chr4 115360796 115360838 -68927824 + AT_rich Low_complexity Low_complexity 1 42 0 405 329 109 7 chr4 115361388 115361525 -68927137 + MER58A DNA MER1_type 1 151 0 1659 169 35 35 chr4 115361531 115361903 -68926759 + THE1C LTR MaLR 3 374 -1 9216 137 32 43 chr4 115361920 115363509 -68925153 + THE1C-int LTR MaLR 9 1580 0 1572 185 32 27 chr4 115363509 115363882 -68924780 + THE1C LTR MaLR 1 375 0 383 171 0 14 chr4 115363887 115363957 -68924705 + MER58C DNA MER1_type 147 215 0 23 54 0 0 chr4 115363999 115364036 -68924626 + AT_rich Low_complexity Low_complexity 1 37 0 7571 23 0 0 chr4 115364036 115365439 -68923223 - L1PA3 LINE L1 0 6155 4747 22 0 0 0 chr4 115365633 115365655 -68923007 + AT_rich Low_complexity Low_complexity 1 22 0 444 221 31 16 chr4 115366153 115366280 -68922382 - L1ME3A LINE L1 -8 6162 6034 937 249 105 23 chr4 115366304 115366818 -68921844 - L1ME3A LINE L1 -241 5929 5333 248 200 0 18 chr4 115366820 115366875 -68921787 - LTR65 LTR ERV1 -615 54 1 421 376 66 19 chr4 115366973 115367186 -68921476 + MIR SINE MIR 38 260 -2 261 275 55 11 chr4 115367885 115367976 -68920686 - L1MC2 LINE L1 -11 6333 6239 760 315 86 19 chr4 115368104 115368732 -68919930 + L1MEc LINE L1 1115 1784 -4612 297 0 0 0 chr4 115368749 115368782 -68919880 + (CA)n Simple_repeat Simple_repeat 2 34 0 241 323 77 31 chr4 115369242 115369437 -68919225 - MLT1J LTR MaLR -196 315 112 26 64 0 0 chr4 115369687 115369734 -68918928 + AT_rich Low_complexity Low_complexity 1 47 0 195 162 0 0 chr4 115369899 115369936 -68918726 + (CA)n Simple_repeat Simple_repeat 1 37 0 1649 289 52 79 chr4 115370096 115371667 -68916995 + L1MA6 LINE L1 466 2649 -4916 206 81 27 0 chr4 115371672 115371709 -68916953 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 10249 201 66 74 chr4 115371716 115372017 -68916645 + L1MA6 LINE L1 3462 3764 -3801 1436 228 10 10 chr4 115372017 115372306 -68916356 - AluJo SINE Alu -20 292 4 10249 201 66 74 chr4 115372306 115372393 -68916269 + L1MA6 LINE L1 3764 3850 -3715 331 20 59 0 chr4 115372393 115372444 -68916218 + (TATAA)n Simple_repeat Simple_repeat 2 55 0 10249 201 66 74 chr4 115372444 115372852 -68915810 + L1MA6 LINE L1 3850 4260 -3305 393 75 0 0 chr4 115372852 115372905 -68915757 + (TA)n Simple_repeat Simple_repeat 2 54 0 10249 201 66 74 chr4 115372905 115373531 -68915131 + L1MA6 LINE L1 4260 4889 -2676 2208 115 48 28 chr4 115373531 115373888 -68914774 - THE1B LTR MaLR 0 364 1 10249 201 66 74 chr4 115373888 115375711 -68912951 + L1MA6 LINE L1 4889 6691 -874 1216 249 42 137 chr4 115375767 115376192 -68912470 + Tigger2 DNA MER2_type 2334 2718 0 5229 154 28 32 chr4 115376193 115377224 -68911438 + L1MA6 LINE L1 6689 7715 -4 25 0 0 0 chr4 115377503 115377528 -68911134 + AT_rich Low_complexity Low_complexity 1 25 0 559 239 0 11 chr4 115377579 115377759 -68910903 + (TA)n Simple_repeat Simple_repeat 1 178 0 22 0 0 0 chr4 115377797 115377819 -68910843 + AT_rich Low_complexity Low_complexity 1 22 0 613 331 107 9 chr4 115379016 115379333 -68909329 + L2 LINE L2 2445 2792 -522 665 264 11 28 chr4 115379346 115379524 -68909138 + MLT1A1 LTR MaLR 90 264 -101 284 301 11 21 chr4 115379732 115379825 -68908837 + L2 LINE L2 3222 3313 0 203 133 0 0 chr4 115380050 115380080 -68908582 + (GGAA)n Simple_repeat Simple_repeat 1 30 0 1847 181 11 8 chr4 115380358 115380722 -68907940 + MLT1A1 LTR MaLR 1 365 0 25 31 0 0 chr4 115380810 115380842 -68907820 + AT_rich Low_complexity Low_complexity 1 32 0 7130 121 29 4 chr4 115381023 115382095 -68906567 + HERVL-B3 LTR ERVL 4556 5654 0 1789 240 35 65 chr4 115382096 115382666 -68905996 + MLT2B3 LTR ERVL 2 554 0 4655 168 18 16 chr4 115382983 115384365 -68904297 - L1PA16 LINE L1 -38 6128 4742 4220 245 15 12 chr4 115384365 115385121 -68903541 - L1P LINE L1 -825 5321 4568 2196 117 13 45 chr4 115385121 115385497 -68903165 - THE1B LTR MaLR 0 364 1 9212 132 14 60 chr4 115385497 115387153 -68901509 - THE1B-int LTR MaLR 0 1580 1 2343 128 17 3 chr4 115387153 115387512 -68901150 - THE1B LTR MaLR 0 364 1 4220 245 15 12 chr4 115387512 115387898 -68900764 - L1P LINE L1 -1577 4569 4174 6033 232 21 6 chr4 115387912 115388627 -68900035 - L1PA15-16 LINE L1 -5526 1323 621 1580 185 0 0 chr4 115388627 115388886 -68899776 + AluSx SINE Alu 34 292 -20 759 50 0 0 chr4 115388886 115388986 -68899676 + (GGAA)n Simple_repeat Simple_repeat 3 102 0 6033 232 21 6 chr4 115388986 115389901 -68898761 - L1PA15-16 LINE L1 -6227 622 1 21 0 0 0 chr4 115390928 115390949 -68897713 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr4 115392178 115392212 -68896450 + AT_rich Low_complexity Low_complexity 1 34 0 621 192 55 44 chr4 115393528 115393710 -68894952 - L1MA8 LINE L1 -41 6250 6067 27 0 0 0 chr4 115394389 115394416 -68894246 + AT_rich Low_complexity Low_complexity 1 27 0 2013 121 0 3 chr4 115394640 115394929 -68893733 - AluSc SINE Alu -21 288 1 282 56 0 0 chr4 115395487 115395523 -68893139 + (T)n Simple_repeat Simple_repeat 1 36 0 2319 89 0 0 chr4 115395561 115395863 -68892799 - AluY SINE Alu -9 302 1 288 0 0 0 chr4 115395865 115395897 -68892765 + (TTA)n Simple_repeat Simple_repeat 2 33 0 701 250 117 120 chr4 115396901 115397095 -68891567 - MER21B LTR ERV1 -157 706 513 3621 117 56 82 chr4 115397095 115397901 -68890761 + LTR1 LTR ERV1 1 785 0 701 250 117 120 chr4 115397901 115398314 -68890348 - MER21B LTR ERV1 -350 513 101 297 273 13 37 chr4 115398319 115398471 -68890191 - MER21B LTR ERV1 -441 164 22 37 23 0 0 chr4 115398664 115398708 -68889954 + AT_rich Low_complexity Low_complexity 1 44 0 1841 193 44 0 chr4 115399349 115399733 -68888929 - MER57A LTR ERV1 0 403 3 1205 201 70 73 chr4 115399766 115400150 -68888512 - MLT2C2 LTR ERVL 0 464 82 320 0 0 24 chr4 115400309 115400350 -68888312 + (TG)n Simple_repeat Simple_repeat 1 40 0 393 361 70 0 chr4 115401708 115401866 -68886796 + MIR SINE MIR 94 262 0 22 56 0 0 chr4 115402492 115402528 -68886134 + AT_rich Low_complexity Low_complexity 1 36 0 1655 146 64 7 chr4 115404027 115404307 -68884355 - AluSx SINE Alu -16 296 1 2349 97 3 7 chr4 115404380 115404690 -68883972 - AluSq SINE Alu -4 309 1 27 49 0 0 chr4 115405979 115406020 -68882642 + AT_rich Low_complexity Low_complexity 1 41 0 1286 259 35 6 chr4 115406023 115406345 -68882317 - MER90 LTR ERV1 0 614 189 2765 132 2 14 chr4 115406345 115406778 -68881884 + MSTA LTR MaLR 1 428 0 1286 259 35 6 chr4 115406778 115406952 -68881710 - MER90 LTR ERV1 -425 189 22 200 214 0 0 chr4 115407084 115407126 -68881536 + (TATATG)n Simple_repeat Simple_repeat 5 46 0 1026 323 102 28 chr4 115407199 115407926 -68880736 - L2 LINE L2 0 3313 2518 442 320 91 20 chr4 115407926 115408179 -68880483 - L2 LINE L2 -3015 299 29 21 0 0 0 chr4 115408353 115408374 -68880288 + AT_rich Low_complexity Low_complexity 1 21 0 227 344 97 50 chr4 115408803 115409062 -68879600 - L2 LINE L2 -9 3304 3034 2274 111 13 24 chr4 115409238 115409617 -68879045 + L1PA13 LINE L1 5789 6163 0 991 138 1 0 chr4 115409842 115410009 -68878653 - L1P LINE L1 -820 5331 5164 * 5965 86 1 2 chr4 115410004 115410815 -68877847 + L1PA7 LINE L1 5316 6125 -29 21 57 0 0 chr4 115411121 115411156 -68877506 + AT_rich Low_complexity Low_complexity 1 35 0 5312 117 19 35 chr4 115411346 115413254 -68875408 - L1PA13 LINE L1 -6 6157 4267 33 73 0 0 chr4 115413534 115413602 -68875060 + AT_rich Low_complexity Low_complexity 1 68 0 16429 104 9 24 chr4 115414988 115417654 -68871008 - L1P3 LINE L1 -721 5451 2834 233 175 0 0 chr4 115417653 115417693 -68870969 + L1P LINE L1 2953 2992 -3154 * 11425 122 8 6 chr4 115417700 115418020 -68870642 + L1P LINE L1 3168 3486 -2660 8166 51 8 0 chr4 115418020 115418981 -68869681 + LTR5 LTR ERVK 1 969 0 11425 122 8 6 chr4 115418981 115420456 -68868206 + L1P LINE L1 3486 4967 -1179 25 0 0 0 chr4 115420906 115420931 -68867731 + AT_rich Low_complexity Low_complexity 1 25 0 1186 223 41 63 chr4 115420940 115421303 -68867359 + MLT1A1 LTR MaLR 11 365 0 188 385 23 0 chr4 115421592 115421722 -68866940 - MIR SINE MIR -10 252 120 22 56 0 0 chr4 115421924 115421960 -68866702 + AT_rich Low_complexity Low_complexity 1 36 0 218 348 109 36 chr4 115422043 115422264 -68866398 - L3 LINE CR1 -119 1458 1222 520 236 50 58 chr4 115422314 115422555 -68866107 - LTR37B LTR ERV1 -44 424 186 1963 208 43 64 chr4 115424817 115425376 -68863286 + MLT2B3 LTR ERVL 1 547 -7 22 0 0 0 chr4 115425430 115425452 -68863210 + AT_rich Low_complexity Low_complexity 1 22 0 5724 156 44 52 chr4 115425452 115426551 -68862111 - L1MA2 LINE L1 0 6304 5198 2669 81 41 24 chr4 115426551 115426921 -68861741 - L1PA13 LINE L1 -3 6160 5798 387 0 0 0 chr4 115426921 115426964 -68861698 + (TG)n Simple_repeat Simple_repeat 2 44 0 252 0 0 0 chr4 115426963 115426991 -68861671 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 2669 81 41 24 chr4 115426964 115427038 -68861624 - L1PA13 LINE L1 -365 5798 5736 5724 156 44 52 chr4 115427038 115428159 -68860503 - L1MA2 LINE L1 -1106 5198 4109 844 346 22 28 chr4 115428161 115428623 -68860039 - L1PA13 LINE L1 -6327 460 2 2763 243 15 20 chr4 115428629 115429521 -68859141 - L1M4 LINE L1 -944 5700 4814 1019 238 32 20 chr4 115429517 115430074 -68858588 - L1M4 LINE L1 -5077 1569 820 * 211 180 0 49 chr4 115430074 115430135 -68858527 + GA-rich Low_complexity Low_complexity 3 60 0 226 228 0 129 chr4 115430206 115430307 -68858355 - L1M4 LINE L1 -5844 698 611 3522 171 34 20 chr4 115430893 115431596 -68857066 + L1MA5 LINE L1 5480 6192 -108 183 42 0 0 chr4 115431665 115431689 -68856973 + (CAA)n Simple_repeat Simple_repeat 2 25 0 503 332 118 37 chr4 115431697 115431762 -68856900 - L1M4 LINE L1 -5981 561 503 195 42 0 0 chr4 115431762 115431786 -68856876 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 503 332 118 37 chr4 115431786 115432238 -68856424 - L1M4 LINE L1 -6039 503 2 748 160 8 15 chr4 115432973 115433104 -68855558 + FLAM_C SINE Alu 1 130 -3 229 33 49 66 chr4 115433342 115433403 -68855259 + (TA)n Simple_repeat Simple_repeat 2 61 0 836 57 45 0 chr4 115433412 115433569 -68855093 + (TATAA)n Simple_repeat Simple_repeat 5 168 0 25 0 0 0 chr4 115434302 115434327 -68854335 + AT_rich Low_complexity Low_complexity 1 25 0 6938 226 47 15 chr4 115435153 115436652 -68852010 + L1M1 LINE L1 10 1556 -6009 1247 134 17 22 chr4 115436647 115436878 -68851784 + L1M1 LINE L1 2498 2727 -4838 * 758 225 70 120 chr4 115537128 115537545 -68751117 + MSTD LTR MaLR 1 396 0 2899 218 74 1 chr4 115537588 115538289 -68750373 - L1PB4 LINE L1 0 6156 5405 * 19611 154 56 27 chr4 115538285 115540439 -68748223 - L1P LINE L1 -1314 4832 2548 219 114 0 0 chr4 115540439 115540474 -68748188 + (CA)n Simple_repeat Simple_repeat 2 36 0 19611 154 56 27 chr4 115540474 115542023 -68746639 - L1P LINE L1 -3598 2548 1046 6731 36 0 1 chr4 115542021 115542876 -68745786 + L1P LINE L1 2549 3402 -2744 * 342 255 32 0 chr4 115542976 115543070 -68745592 - MER67D LTR ERV1 -105 409 313 459 300 35 14 chr4 115543116 115543319 -68745343 - MER67C LTR ERV1 -207 312 104 3050 58 0 0 chr4 115543326 115543708 -68744954 - L1PA5 LINE L1 -3 6151 5770 8144 29 9 1 chr4 115543722 115545467 -68743195 - L1PA4 LINE L1 -3 6152 4400 245 30 0 0 chr4 115545468 115545501 -68743161 + L1P LINE L1 4289 4321 -1825 1224 202 4 9 chr4 115545602 115545835 -68742827 + AluJo SINE Alu 50 281 -31 253 243 10 10 chr4 115545851 115545954 -68742708 + (TA)n Simple_repeat Simple_repeat 2 104 0 2157 104 0 35 chr4 115546693 115547010 -68741652 - AluSg SINE Alu -4 306 1 1549 44 5 15 chr4 115547781 115547985 -68740677 - AluY SINE Alu -5 306 105 378 308 37 0 chr4 115548417 115548524 -68740138 - L2 LINE L2 0 3313 3203 21 57 0 0 chr4 115548670 115548705 -68739957 + AT_rich Low_complexity Low_complexity 1 35 0 487 306 80 29 chr4 115548775 115549190 -68739472 - Charlie7 DNA MER1_type -2121 491 56 25 90 0 0 chr4 115551291 115551358 -68737304 + AT_rich Low_complexity Low_complexity 1 67 0 22 0 0 0 chr4 115551379 115551401 -68737261 + AT_rich Low_complexity Low_complexity 1 22 0 399 267 57 0 chr4 115552338 115552443 -68736219 - MIR SINE MIR -148 114 4 23 33 0 0 chr4 115553341 115553371 -68735291 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 115553944 115553965 -68734697 + AT_rich Low_complexity Low_complexity 1 21 0 742 249 67 0 chr4 115553978 115554171 -68734491 - MER3 DNA MER1_type 0 209 4 180 0 0 0 chr4 115554860 115554880 -68733782 + (TTTTTA)n Simple_repeat Simple_repeat 1 20 0 760 199 149 44 chr4 115555051 115555232 -68733430 + MER67D LTR ERV1 234 433 -81 2114 213 24 32 chr4 115555281 115555788 -68732874 - MLT1D LTR MaLR -2 503 1 362 200 141 54 chr4 115555790 115555913 -68732749 - MER20B DNA MER1_type -61 722 576 1980 194 0 6 chr4 115555913 115556278 -68732384 + MER47A DNA MER2_type 1 363 -3 362 200 141 54 chr4 115556278 115556339 -68732323 - MER20B DNA MER1_type -207 576 522 952 323 71 11 chr4 115556476 115556953 -68731709 - MER20B DNA MER1_type -274 509 4 360 0 0 0 chr4 115557137 115557177 -68731485 + (TG)n Simple_repeat Simple_repeat 1 40 0 188 245 20 0 chr4 115557253 115557302 -68731360 - L2 LINE L2 0 3313 3264 271 340 27 84 chr4 115557373 115557670 -68730992 - L2 LINE L2 -558 2756 2477 2185 107 0 3 chr4 115558387 115558687 -68729975 + AluSq SINE Alu 1 299 -14 216 0 0 0 chr4 115558727 115558751 -68729911 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2106 118 7 7 chr4 115559413 115559710 -68728952 - AluSx SINE Alu -14 298 2 362 331 19 7 chr4 115561312 115561466 -68727196 + MIR SINE MIR 81 236 -26 21 0 0 0 chr4 115561466 115561487 -68727175 + AT_rich Low_complexity Low_complexity 1 21 0 2651 33 0 0 chr4 115561565 115561868 -68726794 - AluY SINE Alu -8 303 1 570 100 0 0 chr4 115562113 115562193 -68726469 - HERVH LTR ERV1 -310 7403 7324 1448 107 0 0 chr4 115562193 115562398 -68726264 - HERVH LTR ERV1 -1894 5819 5615 3117 122 0 2 chr4 115562428 115563043 -68725619 - HERVH LTR ERV1 -2564 5149 4488 5739 112 2 2 chr4 115563045 115563899 -68724763 - HERVH LTR ERV1 -3720 3993 3140 * 7554 101 2 7 chr4 115563893 115564978 -68723684 - HERVH LTR ERV1 -4726 2987 1908 1352 132 10 15 chr4 115564978 115565183 -68723479 + AluSg/x SINE Alu 86 289 -20 2347 189 44 16 chr4 115565708 115566462 -68722200 - L1M4 LINE L1 -401 5777 4999 22 0 0 0 chr4 115566689 115566711 -68721951 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 115566945 115566975 -68721687 + AT_rich Low_complexity Low_complexity 1 30 0 8852 60 12 5 chr4 115567134 115568331 -68720331 - L1P LINE L1 -2765 3381 2177 3029 75 0 0 chr4 115568329 115568730 -68719932 + L1P LINE L1 1743 2143 -4003 * 4992 187 25 12 chr4 115568742 115569584 -68719078 - L1 LINE L1 -894 5252 4391 504 0 0 0 chr4 115569584 115569640 -68719022 + (TTTTA)n Simple_repeat Simple_repeat 4 59 0 4992 187 25 12 chr4 115569640 115569887 -68718775 - L1 LINE L1 -1755 4391 4149 647 286 19 5 chr4 115571279 115571485 -68717177 - L1ME LINE L1 -474 5688 5480 1545 199 7 0 chr4 115573901 115574187 -68714475 - AluJb SINE Alu -12 300 13 2585 202 26 54 chr4 115575424 115575985 -68712677 + MER92B LTR ERV1 6 548 -88 2366 47 40 0 chr4 115575985 115576281 -68712381 + AluY SINE Alu 1 308 -3 2585 202 26 54 chr4 115576281 115576368 -68712294 + MER92B LTR ERV1 548 636 0 638 304 101 35 chr4 115576477 115576793 -68711869 - L2 LINE L2 -901 2413 2077 1536 236 20 11 chr4 115576918 115577266 -68711396 - MER87 LTR ERV1 -23 518 168 2075 98 3 17 chr4 115578609 115578904 -68709758 + AluY SINE Alu 1 291 -20 326 145 0 14 chr4 115579470 115579539 -68709123 + (TA)n Simple_repeat Simple_repeat 2 69 0 890 274 47 61 chr4 115581865 115582351 -68706311 + L1MA9 LINE L1 1622 2121 -4977 1955 146 3 0 chr4 115582351 115582646 -68706016 + AluSq SINE Alu 1 296 -17 890 274 47 61 chr4 115582646 115582828 -68705834 + L1MA9 LINE L1 2121 2304 -4794 2623 259 59 41 chr4 115582828 115584397 -68704265 + L1M1 LINE L1 2259 3860 -3705 336 276 9 29 chr4 115584397 115584502 -68704160 + (TATATG)n Simple_repeat Simple_repeat 2 104 0 596 179 17 27 chr4 115584504 115584871 -68703791 + (TA)n Simple_repeat Simple_repeat 1 363 0 210 107 0 0 chr4 115584871 115584899 -68703763 + (TG)n Simple_repeat Simple_repeat 2 29 0 4804 224 24 51 chr4 115584903 115586423 -68702239 + L1M1 LINE L1 3877 5354 -2211 3197 116 33 2 chr4 115586405 115587064 -68701598 + L1P4 LINE L1 5073 5746 -417 * 28 0 0 0 chr4 115588143 115588171 -68700491 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr4 115588314 115588347 -68700315 + AT_rich Low_complexity Low_complexity 1 33 0 302 306 8 65 chr4 115588365 115588489 -68700173 + MIR3 SINE MIR 89 205 -3 728 247 60 0 chr4 115589673 115589924 -68698738 - L1MCa LINE L1 -5014 1412 1147 551 221 22 7 chr4 115589914 115590050 -68698612 - L1MCa LINE L1 -6270 156 19 * 1867 266 38 7 chr4 115590293 115590880 -68697782 + L1MA9 LINE L1 3402 4006 -3161 3819 189 40 6 chr4 115590899 115592496 -68696166 + L1MA9 LINE L1 5549 7333 0 2127 80 3 0 chr4 115592925 115593211 -68695451 - L1PA6 LINE L1 -2 6152 5866 2156 128 0 0 chr4 115594521 115594818 -68693844 + AluSx SINE Alu 1 297 -15 1343 201 10 42 chr4 115595245 115595554 -68693108 + MLT1A1 LTR MaLR 26 324 -41 2610 257 51 89 chr4 115595669 115595992 -68692670 + MLT1A1-int LTR MaLR 238 572 -799 234 62 0 0 chr4 115595992 115596024 -68692638 + (CA)n Simple_repeat Simple_repeat 2 33 0 2610 257 51 89 chr4 115596024 115596877 -68691785 + MLT1A1-int LTR MaLR 572 1369 -2 1559 215 19 33 chr4 115596879 115597247 -68691415 + MLT1A1 LTR MaLR 1 363 -2 22 35 0 0 chr4 115598795 115598824 -68689838 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr4 115600104 115600131 -68688531 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr4 115600361 115600382 -68688280 + AT_rich Low_complexity Low_complexity 1 21 0 392 278 46 52 chr4 115601353 115601547 -68687115 + L2 LINE L2 3118 3310 -3 1640 164 58 19 chr4 115601617 115601976 -68686686 - THE1C LTR MaLR 0 375 3 21 0 0 0 chr4 115602392 115602413 -68686249 + AT_rich Low_complexity Low_complexity 1 21 0 1794 149 28 17 chr4 115602421 115602452 -68686210 - L1MA3 LINE L1 0 6305 6276 285 29 0 0 chr4 115602452 115602486 -68686176 + (TA)n Simple_repeat Simple_repeat 2 35 0 1794 149 28 17 chr4 115602486 115602810 -68685852 - L1MA3 LINE L1 -29 6276 5946 24 0 0 0 chr4 115603137 115603161 -68685501 + AT_rich Low_complexity Low_complexity 1 24 0 1719 168 122 9 chr4 115603174 115603502 -68685160 - MLT1A1 LTR MaLR 0 365 1 2374 165 41 5 chr4 115605257 115605670 -68682992 + MSTA LTR MaLR 1 428 0 471 259 4 105 chr4 115605866 115606105 -68682557 + MER58C DNA MER1_type 1 215 0 203 191 21 0 chr4 115606436 115606483 -68682179 + (CATATA)n Simple_repeat Simple_repeat 5 52 0 198 71 0 0 chr4 115606542 115606570 -68682092 + (TA)n Simple_repeat Simple_repeat 2 29 0 1624 236 99 15 chr4 115606748 115607341 -68681321 - L1ME1 LINE L1 -327 5839 5188 272 287 47 54 chr4 115609308 115609437 -68679225 - L2 LINE L2 -8 3305 3178 229 43 0 101 chr4 115609647 115609716 -68678946 + (TAAAAA)n Simple_repeat Simple_repeat 1 62 0 21 82 0 0 chr4 115609775 115609824 -68678838 + AT_rich Low_complexity Low_complexity 1 49 0 1415 199 33 3 chr4 115610018 115610355 -68678307 + L1MB8 LINE L1 4903 5249 -897 381 182 23 11 chr4 115610364 115610452 -68678210 - LTR55 LTR ERV -6 542 454 1356 187 10 37 chr4 115610516 115610810 -68677852 - LTR55 LTR ERV -262 286 1 4057 208 25 6 chr4 115610814 115611719 -68676943 + L1MB8 LINE L1 5254 6176 -2 236 388 94 18 chr4 115611826 115612050 -68676612 - L2 LINE L2 -896 2418 2178 343 249 79 44 chr4 115612478 115612795 -68675867 + L1M4c LINE L1 2017 2344 -4040 1063 123 0 0 chr4 115612815 115612970 -68675692 + L1P LINE L1 258 412 -5734 873 337 45 30 chr4 115613378 115613782 -68674880 + L2 LINE L2 2886 3295 -18 487 309 14 0 chr4 115613792 115614009 -68674653 + L1MEc LINE L1 1264 1483 -4913 277 298 117 11 chr4 115614253 115614347 -68674315 + MER115 DNA AcHobo 337 440 -253 309 299 58 35 chr4 115614452 115614626 -68674036 + L1MEc LINE L1 1640 1817 -4579 339 304 77 18 chr4 115614960 115615180 -68673482 + L1M4c LINE L1 2367 2599 -3783 209 302 0 0 chr4 115616355 115616418 -68672244 + (TA)n Simple_repeat Simple_repeat 2 64 0 198 143 0 0 chr4 115616419 115616454 -68672208 + (CA)n Simple_repeat Simple_repeat 2 36 0 397 217 11 43 chr4 115617029 115617121 -68671541 + MLT2E LTR ERVL 32 120 -508 23 0 0 0 chr4 115617655 115617678 -68670984 + AT_rich Low_complexity Low_complexity 1 23 0 302 67 22 0 chr4 115617843 115617888 -68670774 + (TC)n Simple_repeat Simple_repeat 2 47 0 261 0 0 0 chr4 115617888 115617917 -68670745 + (CA)n Simple_repeat Simple_repeat 1 29 0 211 286 0 0 chr4 115618244 115618300 -68670362 - L2 LINE L2 -1904 1410 1355 200 404 48 26 chr4 115619223 115619493 -68669169 - L2 LINE L2 -675 2639 2364 294 329 117 22 chr4 115619494 115619768 -68668894 - L2 LINE L2 -1075 2239 1940 327 358 53 7 chr4 115621803 115621954 -68666708 - MIR SINE MIR -82 180 23 610 338 21 84 chr4 115622145 115622349 -68666313 - L2 LINE L2 -6 3307 3092 2308 66 0 0 chr4 115622349 115622635 -68666027 + AluY SINE Alu 1 286 -25 610 338 21 84 chr4 115622635 115622953 -68665709 - L2 LINE L2 -221 3092 2818 964 237 179 90 chr4 115623367 115623869 -68664793 + MER77 LTR ERV1 53 599 -6 615 221 0 8 chr4 115625127 115625254 -68663408 + FLAM_A SINE Alu 1 126 -7 1014 343 118 17 chr4 115625463 115626343 -68662319 + L3 LINE CR1 271 1239 -338 314 267 56 43 chr4 115626873 115627034 -68661628 - MIR SINE MIR -98 164 2 2260 86 0 10 chr4 115627136 115627440 -68661222 + AluY SINE Alu 1 301 -10 21 0 0 0 chr4 115627489 115627510 -68661152 + AT_rich Low_complexity Low_complexity 1 21 0 782 175 39 0 chr4 115627832 115627986 -68660676 + MLT2C2 LTR ERVL 2 161 -303 5270 161 51 14 chr4 115628086 115630085 -68658577 + L1MA8 LINE L1 4219 6290 -1 247 319 58 16 chr4 115630338 115630526 -68658136 + HAL1 LINE L1 1269 1464 -1043 470 248 72 0 chr4 115631690 115631815 -68656847 + L2 LINE L2 844 977 -2337 775 169 7 7 chr4 115632273 115632409 -68656253 - AluJo SINE Alu -176 136 1 744 285 59 19 chr4 115632771 115633041 -68655621 - HERVL LTR ERVL -3549 1447 1167 1263 229 106 27 chr4 115633273 115633640 -68655022 - MSTD LTR MaLR 0 396 1 3480 149 29 5 chr4 115634061 115634650 -68654012 + LTR26 LTR ERV1 1 603 0 483 306 101 24 chr4 115635209 115635457 -68653205 + MLT1L LTR MaLR 349 615 0 1641 146 149 16 chr4 115635926 115636247 -68652415 + THE1B LTR MaLR 1 364 0 10969 109 19 2 chr4 115636247 115637801 -68650861 + THE1B-int LTR MaLR 1 1580 0 1820 157 71 40 chr4 115637804 115638154 -68650508 + THE1B LTR MaLR 4 364 0 256 254 0 0 chr4 115638234 115638289 -68650373 + GA-rich Low_complexity Low_complexity 1 55 0 1289 154 45 0 chr4 115638493 115638739 -68649923 - L1MA7 LINE L1 -4 6287 6031 231 281 16 31 chr4 115638747 115638811 -68649851 + L1M3de LINE L1 278 340 -6313 1952 78 3 117 chr4 115639848 115640208 -68648454 - L1PB2 LINE L1 -2 6149 5831 2032 154 0 0 chr4 115640300 115640611 -68648051 + AluSx SINE Alu 2 312 0 25 0 0 0 chr4 115640660 115640685 -68647977 + AT_rich Low_complexity Low_complexity 1 25 0 33 46 0 15 chr4 115640726 115640775 -68647887 + AT_rich Low_complexity Low_complexity 1 50 -14 1852 153 35 0 chr4 115640775 115641114 -68647548 - L1MB1 LINE L1 0 6168 5818 33 46 0 15 chr4 115641114 115641129 -68647533 + AT_rich Low_complexity Low_complexity 50 64 0 21 36 0 0 chr4 115641321 115641349 -68647313 + AT_rich Low_complexity Low_complexity 1 28 0 1873 127 14 0 chr4 115641996 115642271 -68646391 - AluSx SINE Alu -18 294 16 186 143 0 0 chr4 115642621 115642656 -68646006 + (TATATG)n Simple_repeat Simple_repeat 5 39 0 30 27 0 0 chr4 115643596 115643633 -68645029 + AT_rich Low_complexity Low_complexity 1 37 0 274 331 30 23 chr4 115644768 115644901 -68643761 - HERVL LTR ERVL -3127 2527 2394 415 325 20 11 chr4 115648308 115648529 -68640133 + GA-rich Low_complexity Low_complexity 1 222 0 21 0 0 0 chr4 115648638 115648659 -68640003 + AT_rich Low_complexity Low_complexity 1 21 0 1119 126 0 0 chr4 115648727 115648886 -68639776 + AluSg/x SINE Alu 128 286 -26 276 53 0 0 chr4 115648915 115648953 -68639709 + (TG)n Simple_repeat Simple_repeat 2 39 0 341 394 0 11 chr4 115651840 115652015 -68636647 - MLT1J LTR MaLR -294 217 45 460 343 20 0 chr4 115652525 115652671 -68635991 + MLT1I LTR MaLR 124 272 -137 4615 248 43 36 chr4 115652789 115656816 -68631846 - L1PA11 LINE L1 -397 7207 2477 2627 124 2 7 chr4 115656816 115657220 -68631442 + L1PA11 LINE L1 7211 7612 0 4615 248 43 36 chr4 115657220 115659708 -68628954 - L1P4 LINE L1 -5127 2477 8 1155 206 34 23 chr4 115659921 115660374 -68628288 - MLT1D LTR MaLR 0 505 1 271 285 65 80 chr4 115661964 115662164 -68626498 - MIR SINE MIR -45 217 21 741 223 46 0 chr4 115662243 115662418 -68626244 + L1MA7 LINE L1 5957 6139 -152 7481 34 0 2 chr4 115662440 115663799 -68624863 - L1PA3 LINE L1 -1 6154 4796 288 230 46 11 chr4 115663938 115664025 -68624637 + MIR SINE MIR 123 212 -50 214 250 0 0 chr4 115664071 115664115 -68624547 + L2 LINE L2 3265 3308 -5 1451 275 70 52 chr4 115665411 115666665 -68621997 - L1ME1 LINE L1 -63 6103 4780 753 259 77 55 chr4 115666710 115667326 -68621336 + L1MEc LINE L1 757 1248 -4969 706 254 32 40 chr4 115667324 115667354 -68621308 + L1MEc LINE L1 1619 1648 -4748 * 198 62 0 31 chr4 115667354 115667386 -68621276 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 1815 152 3 0 chr4 115667386 115667669 -68620993 - AluSx SINE Alu -1 315 1 706 254 32 40 chr4 115667669 115667885 -68620777 + L1MEc LINE L1 1646 1864 -4532 1127 241 53 37 chr4 115667893 115668192 -68620470 - MLT1F1 LTR MaLR -263 304 1 22 0 0 0 chr4 115668217 115668239 -68620423 + AT_rich Low_complexity Low_complexity 1 22 0 1941 184 45 3 chr4 115669236 115669616 -68619046 + MSTD LTR MaLR 1 396 0 236 125 0 0 chr4 115670209 115670257 -68618405 + L1ME2 LINE L1 4421 4468 -1678 1615 279 58 34 chr4 115670275 115671832 -68616830 + L1ME2 LINE L1 4565 6155 -9 246 345 49 28 chr4 115671864 115672006 -68616656 - L2 LINE L2 -494 2820 2676 803 237 128 55 chr4 115672611 115673053 -68615609 - MLT1D LTR MaLR 0 567 1 214 254 131 49 chr4 115673207 115673223 -68615439 + MIR SINE MIR 129 142 -120 2231 146 11 19 chr4 115673223 115673601 -68615061 - THE1C LTR MaLR 0 375 1 214 254 131 49 chr4 115673601 115673706 -68614956 + MIR SINE MIR 142 260 -2 2168 84 0 11 chr4 115674626 115674945 -68613717 + AluY SINE Alu 1 316 0 1355 225 129 24 chr4 115675091 115675509 -68613153 - MLT1C LTR MaLR 0 467 6 276 264 33 80 chr4 115676458 115676670 -68611992 - L1MCc LINE L1 -6145 278 77 1905 261 88 47 chr4 115676682 115677701 -68610961 + L1ME3 LINE L1 5088 6157 -5 328 280 35 35 chr4 115677988 115678131 -68610531 - L1MEd LINE L1 -5965 154 12 438 360 115 47 chr4 115678216 115678818 -68609844 - L1MEd LINE L1 -5396 723 81 261 57 0 0 chr4 115678834 115678869 -68609793 + (TG)n Simple_repeat Simple_repeat 1 35 0 24 0 0 0 chr4 115679340 115679364 -68609298 + AT_rich Low_complexity Low_complexity 1 24 0 2469 137 20 0 chr4 115680526 115680921 -68607741 - MER57A LTR ERV1 0 403 1 1401 84 205 0 chr4 115680921 115681136 -68607526 - MER57A-int LTR ERV1 0 7537 7279 718 121 16 32 chr4 115681136 115681260 -68607402 - LTR54B LTR ERV1 -367 131 10 26531 133 24 17 chr4 115681265 115686593 -68602069 - MER57A-int LTR ERV1 -389 7148 1073 7975 146 20 6 chr4 115686572 115687822 -68600840 - MER57A-int LTR ERV1 -6269 1268 1 * 2120 188 10 0 chr4 115687822 115688221 -68600441 - MER57A LTR ERV1 0 403 1 3085 94 2 20 chr4 115690006 115690462 -68598200 - LTR7 LTR ERV1 -2 448 1 3067 72 25 22 chr4 115690863 115691310 -68597352 - LTR7 LTR ERV1 -2 448 1 995 158 15 30 chr4 115691310 115691512 -68597150 - HERVH LTR ERV1 0 7713 7515 187 308 91 35 chr4 115741513 115741656 -68547006 - L3b LINE CR1 -145 1438 1288 504 272 161 9 chr4 115742137 115742354 -68546308 - MIR SINE MIR -2 260 11 24 53 0 0 chr4 115743016 115743054 -68545608 + AT_rich Low_complexity Low_complexity 1 38 0 1669 153 23 0 chr4 115743560 115743822 -68544840 + AluSx SINE Alu 1 268 -44 620 301 65 13 chr4 115744200 115744429 -68544233 + L1MC4 LINE L1 6736 6976 -1066 537 234 97 19 chr4 115744462 115744719 -68543943 + L1MC5 LINE L1 6963 7239 -722 372 273 58 58 chr4 115744918 115745123 -68543539 + L1ME3A LINE L1 5966 6170 0 2369 125 28 17 chr4 115746142 115746502 -68542160 + THE1B LTR MaLR 1 364 0 9379 102 117 1 chr4 115746502 115747917 -68540745 + THE1B-int LTR MaLR 1 1580 0 1787 153 37 17 chr4 115747917 115748217 -68540445 + THE1B LTR MaLR 1 306 -58 33944 52 2 1 chr4 115748218 115753332 -68535330 - L1PA5 LINE L1 -8 6146 29 457 186 82 10 chr4 115753332 115753429 -68535233 + THE1B LTR MaLR 261 364 0 199 303 158 18 chr4 115754696 115754861 -68533801 - L3 LINE CR1 -856 721 534 530 335 23 9 chr4 115755960 115756175 -68532487 + L3b LINE CR1 1153 1370 -213 587 254 22 7 chr4 115756502 115756640 -68532022 + MIR SINE MIR 3 142 -120 24 53 0 0 chr4 115757622 115757660 -68531002 + AT_rich Low_complexity Low_complexity 1 38 0 204 40 0 0 chr4 115758104 115758129 -68530533 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1843 288 166 24 chr4 115759242 115760071 -68528591 + L1PB4 LINE L1 11 957 -5893 232 309 21 86 chr4 115760083 115760316 -68528346 + L1PA15-16 LINE L1 513 730 -6119 417 339 25 35 chr4 115760511 115760797 -68527865 + L1PA15-16 LINE L1 1281 1563 -5286 393 250 43 0 chr4 115760799 115760891 -68527771 + L1PA15-16 LINE L1 1474 1569 -5280 * 11321 228 21 44 chr4 115760871 115764931 -68523731 + L1PB4 LINE L1 1336 5489 -1370 1973 111 33 3 chr4 115764931 115765238 -68523424 - L1PB1 LINE L1 -1 6150 5835 11321 228 21 44 chr4 115765238 115766387 -68522275 + L1PB4 LINE L1 5489 6487 -372 396 40 0 0 chr4 115766387 115766437 -68522225 + (TG)n Simple_repeat Simple_repeat 2 51 0 11321 228 21 44 chr4 115766437 115766800 -68521862 + L1PB4 LINE L1 6487 6857 -2 294 265 66 20 chr4 115768131 115768282 -68520380 + HERVL LTR ERVL 2401 2558 -3096 2104 347 59 26 chr4 115768288 115769814 -68518848 + HERVL LTR ERVL 2761 4337 -1427 410 321 38 11 chr4 115769944 115770128 -68518534 + HERVL LTR ERVL 4753 4941 -823 235 130 0 0 chr4 115770146 115770192 -68518470 + LTR66 LTR ERVL 394 439 -171 231 61 0 0 chr4 115770204 115770237 -68518425 + (CA)n Simple_repeat Simple_repeat 2 34 0 186 43 0 0 chr4 115770237 115770260 -68518402 + (GA)n Simple_repeat Simple_repeat 1 23 0 1755 131 4 18 chr4 115770265 115770539 -68518123 - AluSg SINE Alu -40 270 1 282 247 55 0 chr4 115770839 115770912 -68517750 - MLT1H LTR MaLR -16 533 457 789 323 76 38 chr4 115771277 115771912 -68516750 + L1MC4 LINE L1 4178 4836 -1310 2106 122 0 22 chr4 115771918 115772237 -68516425 + AluSx SINE Alu 1 312 0 401 167 26 0 chr4 115772367 115772445 -68516217 - MER53 DNA DNA -4 185 106 342 167 26 13 chr4 115772375 115772453 -68516209 + MER53 DNA DNA 23 101 -88 * 1068 157 258 69 chr4 115772493 115772857 -68515805 - L1MA4 LINE L1 -11 6289 5857 2370 134 29 71 chr4 115772857 115773336 -68515326 + L1MA4 LINE L1 5393 5851 -449 4782 177 44 9 chr4 115773610 115774853 -68513809 - L1PA16 LINE L1 -2 6164 4881 902 178 0 11 chr4 115774851 115775036 -68513626 + L1PA16 LINE L1 4684 4866 -1280 * 34 42 0 0 chr4 115775036 115775084 -68513578 + AT_rich Low_complexity Low_complexity 1 48 0 21556 203 23 20 chr4 115775128 115777322 -68511340 + L1P4 LINE L1 1 2186 -5426 2054 125 0 52 chr4 115777322 115777650 -68511012 + AluSp SINE Alu 1 311 -2 21556 203 23 20 chr4 115777650 115781479 -68507183 + L1P4 LINE L1 2186 7104 -508 3372 104 13 79 chr4 115781479 115782076 -68506586 + L1PA11 LINE L1 5617 6174 0 590 271 110 15 chr4 115782166 115782439 -68506223 + L1MC4 LINE L1 5254 5552 -2256 467 329 50 0 chr4 115782471 115782748 -68505914 + L1MC4 LINE L1 5615 5905 -1903 1659 96 96 63 chr4 115782822 115783125 -68505537 + AluSp SINE Alu 1 313 0 33 80 0 0 chr4 115783453 115783528 -68505134 + AT_rich Low_complexity Low_complexity 1 75 0 664 304 117 0 chr4 115783637 115783894 -68504768 + L1MC4 LINE L1 6703 6989 -1053 315 179 0 0 chr4 115783900 115783967 -68504695 + (TG)n Simple_repeat Simple_repeat 2 68 0 306 273 62 53 chr4 115784054 115784263 -68504399 + L1MC5 LINE L1 7010 7220 -741 26 50 0 0 chr4 115785059 115785099 -68503563 + AT_rich Low_complexity Low_complexity 1 40 0 262 204 54 32 chr4 115785928 115786021 -68502641 + (CATATA)n Simple_repeat Simple_repeat 2 96 0 225 158 0 0 chr4 115786155 115786193 -68502469 + L1 LINE L1 1 38 -6811 1964 286 7 0 chr4 115786198 115786659 -68502003 + L1 LINE L1 919 1382 -5467 974 208 53 16 chr4 115786760 115787063 -68501599 + L1 LINE L1 3660 3973 -2875 1235 153 309 14 chr4 115787065 115787360 -68501302 + MSTA LTR MaLR 1 382 -46 8137 183 50 3 chr4 115787484 115789061 -68499601 + MSTA-int LTR MaLR 1 1651 0 884 116 187 0 chr4 115789061 115789216 -68499446 + MSTA LTR MaLR 1 184 -244 6480 208 32 30 chr4 115789216 115790824 -68497838 + L1 LINE L1 4234 5845 -1003 1455 252 100 34 chr4 115793105 115793228 -68495434 - MER69 DNA AcHobo -17 2509 2395 2337 62 0 0 chr4 115793228 115793534 -68495128 + L1PA7 LINE L1 5843 6148 -6 1455 252 100 34 chr4 115793534 115794021 -68494641 - MER69 DNA AcHobo -131 2395 1859 22 0 0 0 chr4 115794912 115794934 -68493728 + AT_rich Low_complexity Low_complexity 1 22 0 1787 103 46 0 chr4 115794947 115795209 -68493453 + AluSq SINE Alu 1 274 -39 831 250 117 11 chr4 115795275 115795539 -68493123 - LTR33A LTR ERVL -2 521 230 334 338 14 28 chr4 115796003 115796216 -68492446 + MERVL LTR ERVL 4411 4620 -865 25 0 0 0 chr4 115796463 115796488 -68492174 + AT_rich Low_complexity Low_complexity 1 25 0 4384 165 48 5 chr4 115796720 115797491 -68491171 - MER6 DNA MER2_type -30 835 32 24 0 0 0 chr4 115798023 115798047 -68490615 + AT_rich Low_complexity Low_complexity 1 24 0 1788 184 70 31 chr4 115798217 115798630 -68490032 + L1MD3 LINE L1 7561 7989 -6 222 62 0 0 chr4 115798796 115798828 -68489834 + (CA)n Simple_repeat Simple_repeat 2 33 0 26 50 0 0 chr4 115798905 115798945 -68489717 + AT_rich Low_complexity Low_complexity 1 40 0 751 268 196 20 chr4 115799003 115799309 -68489353 - L2 LINE L2 -4 3309 2950 23 54 0 0 chr4 115800555 115800592 -68488070 + AT_rich Low_complexity Low_complexity 1 37 0 2135 122 0 0 chr4 115801039 115801342 -68487320 + AluSx SINE Alu 1 303 -9 411 306 48 75 chr4 115801617 115801911 -68486751 + L1MEc LINE L1 1948 2233 -4163 871 293 125 13 chr4 115801917 115802527 -68486135 + L1MEc LINE L1 2200 2877 -3338 758 234 50 0 chr4 115802547 115802765 -68485897 + L1MEc LINE L1 2943 3171 -3044 486 251 53 27 chr4 115802776 115802963 -68485699 + L1MEc LINE L1 3655 3846 -2369 8361 194 27 22 chr4 115802975 115805718 -68482944 - L1PA16 LINE L1 0 6166 3395 223 276 52 0 chr4 115806403 115806461 -68482201 - MIR SINE MIR -63 145 85 330 119 0 68 chr4 115806517 115806635 -68482027 + (TA)n Simple_repeat Simple_repeat 2 111 0 522 365 72 36 chr4 115807036 115807726 -68480936 + L2 LINE L2 1774 2488 -826 325 326 91 17 chr4 115808386 115808561 -68480101 + MIR SINE MIR 31 218 -44 1864 124 71 0 chr4 115808602 115808868 -68479794 + AluSq SINE Alu 1 285 -28 752 291 4 21 chr4 115808878 115809119 -68479543 - MIR SINE MIR 0 262 26 1272 231 32 31 chr4 115810792 115811160 -68477502 + MLT1E3 LTR MaLR 209 624 0 543 277 11 34 chr4 115811473 115811650 -68477012 + MER5B DNA MER1_type 6 178 0 687 128 18 0 chr4 115812802 115812911 -68475751 - MER39B LTR ERV1 -30 623 513 24 0 0 0 chr4 115813175 115813199 -68475463 + AT_rich Low_complexity Low_complexity 1 24 0 2289 117 6 0 chr4 115814217 115814543 -68474119 - MER39B LTR ERV1 -30 623 296 1412 273 102 42 chr4 115815456 115815827 -68472835 + L1MEc LINE L1 9 435 -5961 1863 41 0 0 chr4 115815827 115816046 -68472616 - AluY SINE Alu -7 304 86 1412 273 102 42 chr4 115816046 115816312 -68472350 + L1MEc LINE L1 435 684 -5712 2069 264 104 39 chr4 115816326 115817326 -68471336 + L1MEc LINE L1 3874 4990 -1225 223 232 18 18 chr4 115817844 115817900 -68470762 + L2 LINE L2 3188 3243 -70 2198 203 46 9 chr4 115818022 115818456 -68470206 - MER82 DNA MER2_type -1 652 203 307 56 37 0 chr4 115818995 115819049 -68469613 + (TA)n Simple_repeat Simple_repeat 2 57 0 421 194 51 10 chr4 115819049 115819147 -68469515 - MER82 DNA MER2_type -458 195 94 239 247 32 22 chr4 115819715 115819815 -68468847 - MIR3 SINE MIR -49 159 56 1554 196 46 25 chr4 115819911 115820278 -68468384 - THE1C LTR MaLR 0 375 1 15241 159 24 15 chr4 115820467 115823776 -68464886 + L1PA11 LINE L1 2447 5791 -377 207 82 20 41 chr4 115823795 115823844 -68464818 + (TA)n Simple_repeat Simple_repeat 2 49 0 561 157 11 6 chr4 115823868 115824046 -68464616 + (TA)n Simple_repeat Simple_repeat 2 180 0 206 160 53 0 chr4 115824073 115824204 -68464458 + (TA)n Simple_repeat Simple_repeat 1 138 0 266 160 32 40 chr4 115824240 115824492 -68464170 + (TA)n Simple_repeat Simple_repeat 1 249 0 440 89 44 56 chr4 115824521 115824701 -68463961 + (TA)n Simple_repeat Simple_repeat 1 178 0 225 128 53 11 chr4 115824714 115824808 -68463854 + (TA)n Simple_repeat Simple_repeat 1 98 0 248 140 18 18 chr4 115824814 115824871 -68463791 - LTR66 LTR ERVL -170 440 384 1962 103 161 9 chr4 115824883 115825224 -68463438 + L1PA11 LINE L1 5782 6174 0 217 245 19 0 chr4 115825225 115825278 -68463384 + MIR SINE MIR 179 232 -30 721 288 54 5 chr4 115825317 115825539 -68463123 + L1ME3A LINE L1 5932 6164 -6 921 263 38 7 chr4 115826144 115826433 -68462229 + MLT1F LTR MaLR 223 520 -22 495 246 125 0 chr4 115826470 115826631 -68462031 + L1MC4a LINE L1 5682 5813 -308 1847 145 7 3 chr4 115826991 115827280 -68461382 + AluSx SINE Alu 14 303 -9 24 32 0 0 chr4 115827805 115827836 -68460826 + AT_rich Low_complexity Low_complexity 1 31 0 1876 153 3 0 chr4 115827913 115828225 -68460437 + AluSx SINE Alu 1 313 0 2798 166 30 51 chr4 115828810 115829687 -68458975 - L1PA16 LINE L1 -3 6309 5435 1602 119 105 3 chr4 115829687 115829971 -68458691 + L1PA16 LINE L1 5852 6166 0 29 28 0 0 chr4 115830645 115830681 -68457981 + AT_rich Low_complexity Low_complexity 1 36 0 265 362 38 0 chr4 115832317 115832422 -68456240 + MIR SINE MIR 41 149 -113 463 277 77 29 chr4 115833384 115833639 -68455023 - MLT1H LTR MaLR -225 324 22 765 257 17 6 chr4 115834786 115834961 -68453701 + MER8 DNA MER2_type 1 177 -62 280 231 0 77 chr4 115834994 115835072 -68453590 - Tigger2 DNA MER2_type -2645 73 2 270 272 76 43 chr4 115835763 115835855 -68452807 + L2 LINE L2 3216 3310 -3 550 125 0 0 chr4 115835857 115835937 -68452725 - MADE1 DNA Mariner 0 80 1 315 238 224 14 chr4 115835949 115836092 -68452570 + MER57A LTR ERV1 3 175 -228 1894 171 30 25 chr4 115836093 115836455 -68452207 + THE1B LTR MaLR 1 364 0 10887 114 11 5 chr4 115836455 115838019 -68450643 + THE1B-int LTR MaLR 1 1574 -6 2181 133 36 28 chr4 115838024 115838385 -68450277 + THE1B LTR MaLR 1 364 0 596 189 91 150 chr4 115838412 115838609 -68450053 + MER57A LTR ERV1 165 346 -57 1741 165 7 4 chr4 115838609 115838934 -68449728 + AluSx SINE Alu 4 329 0 596 189 91 150 chr4 115838934 115838989 -68449673 + MER57A LTR ERV1 346 403 0 910 233 47 9 chr4 115838996 115839228 -68449434 + MER57A-int LTR ERV1 7 247 -7290 4418 134 23 6 chr4 115839524 115840217 -68448445 - MER50 LTR ERV1 -23 711 7 380 225 7 101 chr4 115840596 115840734 -68447928 + MER57A-int LTR ERV1 305 429 -4507 1385 148 15 146 chr4 115840797 115841201 -68447461 + THE1A LTR MaLR 1 351 -4 11436 103 4 1 chr4 115841205 115842781 -68445881 + THE1B-int LTR MaLR 1 1580 0 2233 125 19 30 chr4 115842781 115843149 -68445513 + THE1B LTR MaLR 1 364 0 949 266 60 10 chr4 115843153 115843454 -68445208 - MER4B-int LTR ERV1 -4171 2160 1845 281 173 0 87 chr4 115843496 115843600 -68445062 - MER4B-int LTR ERV1 -5753 845 751 2067 132 75 61 chr4 115843682 115844194 -68444468 - MER4B-int LTR ERV1 -6035 563 2 3420 147 55 3 chr4 115844198 115844778 -68443884 - MER4B LTR ERV1 0 610 1 955 258 58 40 chr4 115844779 115845280 -68443382 + MER57A-int LTR ERV1 1488 1997 -2939 511 219 80 60 chr4 115845317 115845731 -68442931 + MER57A-int LTR ERV1 2117 2572 -2551 1468 222 57 22 chr4 115845788 115846247 -68442415 + MER57A-int LTR ERV1 2546 3020 -1916 399 151 19 85 chr4 115846298 115846404 -68442258 + MER57-int LTR ERV1 5199 5297 -2240 1654 227 17 73 chr4 115846464 115846983 -68441679 + MER57-int LTR ERV1 5331 5820 -1717 427 248 0 36 chr4 115847302 115847439 -68441223 + MER57-int LTR ERV1 5825 5956 -1581 4460 139 9 13 chr4 115847483 115848865 -68439797 - L1PA16 LINE L1 -9 6157 4707 1199 310 46 57 chr4 115849501 115850345 -68438317 + MER57-int LTR ERV1 6321 7155 -382 910 249 76 83 chr4 115850354 115850751 -68437911 + MER57B LTR ERV1 39 432 -2 279 294 254 0 chr4 115851191 115851317 -68437345 + MIR SINE MIR 57 214 -48 27 29 0 0 chr4 115851780 115851814 -68436848 + AT_rich Low_complexity Low_complexity 1 34 0 457 171 136 0 chr4 115852482 115852570 -68436092 - FRAM SINE Alu -31 145 46 181 258 225 39 chr4 115853341 115853519 -68435143 - L2 LINE L2 -899 2415 2205 1703 189 252 173 chr4 115853998 115854944 -68433718 + LTR1B LTR ERV1 1 1020 0 42 57 0 0 chr4 115855584 115855654 -68433008 + AT_rich Low_complexity Low_complexity 1 70 0 14330 170 37 13 chr4 115855658 115858210 -68430452 + L1MA3 LINE L1 9 2621 -4944 7808 189 49 12 chr4 115858204 115860808 -68427854 + L1MA3 LINE L1 5037 7723 -1 * 238 245 82 0 chr4 115861204 115861302 -68427360 + L1ME LINE L1 5718 5823 -298 26 30 0 0 chr4 115864293 115864326 -68424336 + AT_rich Low_complexity Low_complexity 1 33 0 222 298 36 24 chr4 115864466 115864550 -68424112 - L2 LINE L2 0 3272 3188 216 0 0 0 chr4 115864654 115864678 -68423984 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 272 317 58 19 chr4 115864733 115864837 -68423825 + MIR SINE MIR 36 143 -65 22 0 0 0 chr4 115865016 115865038 -68423624 + AT_rich Low_complexity Low_complexity 1 22 0 213 203 17 34 chr4 115865119 115865178 -68423484 - MIR SINE MIR -38 224 167 257 196 0 0 chr4 115865422 115865468 -68423194 - L1MC5 LINE L1 -171 7790 7745 236 155 29 87 chr4 115865477 115865580 -68423082 - L1MC5 LINE L1 -279 7682 7586 324 338 49 21 chr4 115866181 115866323 -68422339 + MIR SINE MIR 15 160 -102 288 347 95 27 chr4 115866348 115866495 -68422167 + MIR SINE MIR 5 161 -101 188 298 0 0 chr4 115868700 115868747 -68419915 + L2 LINE L2 3257 3303 -10 284 344 23 0 chr4 115868875 115869003 -68419659 - MIR SINE MIR -11 251 121 286 287 49 0 chr4 115869145 115869267 -68419395 - MER94 DNA DNA -6 128 1 1180 255 110 44 chr4 115869477 115869932 -68418730 - MLT1D LTR MaLR -15 490 6 29 47 0 0 chr4 115870899 115870942 -68417720 + AT_rich Low_complexity Low_complexity 1 43 0 964 193 11 113 chr4 115871120 115871385 -68417277 + L1MCa LINE L1 21 258 -6168 1940 162 75 14 chr4 115871386 115871812 -68416850 + L1MCa LINE L1 778 1229 -5197 1445 162 23 8 chr4 115871823 115872089 -68416573 - Tigger1 DNA MER2_type -2148 270 1 197 302 202 44 chr4 115872857 115873109 -68415553 + L2 LINE L2 3021 3312 -1 402 320 80 0 chr4 115873361 115873511 -68415151 + MIR SINE MIR 70 231 -31 3207 168 33 3 chr4 115873824 115874394 -68414268 + MER39B LTR ERV1 3 589 -64 9485 159 26 34 chr4 115874394 115875156 -68413506 + MER39B-int LTR ERV1 4058 4824 -1507 2305 89 0 14 chr4 115875156 115875477 -68413185 - AluSc SINE Alu 0 317 1 9485 159 26 34 chr4 115875477 115876626 -68412036 + MER39B-int LTR ERV1 4824 5956 -375 735 204 22 74 chr4 115876657 115876887 -68411775 + MER39B-int LTR ERV1 5950 6167 -164 3079 162 67 28 chr4 115876974 115877590 -68411072 + MER39B LTR ERV1 11 650 -3 21 0 0 0 chr4 115877850 115877871 -68410791 + AT_rich Low_complexity Low_complexity 1 21 0 407 180 34 0 chr4 115878214 115878303 -68410359 + MER5C DNA MER1_type 31 122 -202 217 250 11 65 chr4 115878331 115878423 -68410239 + MER5C DNA MER1_type 233 319 -5 798 288 42 0 chr4 115878582 115878794 -68409868 + MIR SINE MIR 4 224 -38 269 320 80 13 chr4 115878853 115879003 -68409659 + L2 LINE L2 2946 3105 -167 216 0 0 0 chr4 115881120 115881144 -68407518 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 210 71 0 0 chr4 115881575 115881603 -68407059 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 23 68 0 0 chr4 115883434 115883478 -68405184 + AT_rich Low_complexity Low_complexity 1 44 0 1911 232 50 61 chr4 115884895 115885455 -68403207 + MLT2B3 LTR ERVL 1 554 0 284 313 86 64 chr4 115885669 115886075 -68402587 + HAL1 LINE L1 83 497 -2010 2599 242 56 15 chr4 115886079 115886795 -68401867 + L1ME1 LINE L1 5410 6154 -12 238 373 59 12 chr4 115886862 115887031 -68401631 - L2 LINE L2 -1603 1711 1535 559 310 46 0 chr4 115887032 115887229 -68401433 - MIR SINE MIR 0 262 57 3081 170 57 7 chr4 115887239 115887838 -68400824 + MER67C LTR ERV1 82 710 0 2293 107 10 0 chr4 115888657 115888966 -68399696 + AluSx SINE Alu 1 312 0 372 43 0 0 chr4 115889589 115889635 -68399027 + (TG)n Simple_repeat Simple_repeat 2 47 0 2147 218 175 74 chr4 115890132 115891059 -68397603 + LTR28 LTR ERV1 1 1020 0 200 283 28 90 chr4 115892426 115892571 -68396091 - MIR SINE MIR -50 212 77 2663 225 29 21 chr4 115892617 115893022 -68395640 + MER82 DNA MER2_type 1 414 -239 180 0 0 0 chr4 115893022 115893042 -68395620 + (CA)n Simple_repeat Simple_repeat 1 20 0 2663 225 29 21 chr4 115893042 115893258 -68395404 + MER82 DNA MER2_type 414 627 -26 264 54 54 0 chr4 115893625 115893662 -68395000 - MLT2B1 LTR ERVL 0 520 482 213 169 34 45 chr4 115893673 115893736 -68394926 + (TA)n Simple_repeat Simple_repeat 2 65 -24 3215 140 76 14 chr4 115893736 115894301 -68394361 - MER7C DNA MER2_type -1 601 2 213 169 34 45 chr4 115894301 115894326 -68394336 + (TA)n Simple_repeat Simple_repeat 65 89 0 1684 229 84 44 chr4 115894332 115894786 -68393876 - MLT2B1 LTR ERVL -47 473 2 523 78 13 0 chr4 115896826 115896903 -68391759 - MADE1 DNA Mariner -2 78 1 3953 168 28 30 chr4 115897606 115898386 -68390276 - LTR1 LTR ERV1 0 785 7 7428 157 34 18 chr4 115898393 115898764 -68389898 - HUERS-P2 LTR ERV1 0 3088 2725 2467 67 0 0 chr4 115898764 115899064 -68389598 + AluY SINE Alu 1 300 -11 7428 157 34 18 chr4 115899064 115900987 -68387675 - HUERS-P2 LTR ERV1 -363 2725 635 1234 174 49 7 chr4 115950998 115951285 -68337377 + AluSx SINE Alu 1 299 -13 23 33 0 0 chr4 115951677 115951707 -68336955 + AT_rich Low_complexity Low_complexity 1 30 0 581 300 93 30 chr4 115951871 115952365 -68336297 - L1ME4a LINE L1 -199 5922 5398 1968 77 0 81 chr4 115953207 115953492 -68335170 + AluSg SINE Alu 28 289 -21 29 78 0 0 chr4 115953504 115953568 -68335094 + AT_rich Low_complexity Low_complexity 1 64 0 246 201 37 43 chr4 115953568 115953732 -68334930 + (TTATA)n Simple_repeat Simple_repeat 1 163 0 230 189 63 11 chr4 115953687 115953782 -68334880 + (TATAA)n Simple_repeat Simple_repeat 4 103 0 * 202 194 0 0 chr4 115954225 115954261 -68334401 + GA-rich Low_complexity Low_complexity 4 39 0 21 0 0 0 chr4 115954610 115954631 -68334031 + AT_rich Low_complexity Low_complexity 1 21 0 731 332 88 53 chr4 115954638 115955577 -68333085 + L1M4 LINE L1 4232 5203 -943 1797 133 0 0 chr4 115955733 115956004 -68332658 - Tigger5 DNA MER2_type -1 2322 2052 478 316 75 9 chr4 115956316 115956544 -68332118 + MLT1J LTR MaLR 1 243 -268 261 0 0 0 chr4 115957070 115957099 -68331563 + (CA)n Simple_repeat Simple_repeat 1 29 0 2467 70 0 22 chr4 115957487 115957802 -68330860 + AluY SINE Alu 1 308 -3 455 279 9 0 chr4 115958956 115959067 -68329595 + Tigger1 DNA MER2_type 6 117 -2301 24758 139 20 23 chr4 115959092 115965480 -68323182 - L1PA8A LINE L1 -1 6445 5 7368 144 27 16 chr4 115965506 115965694 -68322968 + Tigger1 DNA MER2_type 104 288 -2130 2404 71 0 0 chr4 115965694 115966019 -68322643 + AluY SINE Alu 1 311 0 7368 144 27 16 chr4 115966019 115967110 -68321552 + Tigger1 DNA MER2_type 288 1398 -1020 1841 157 22 3 chr4 115967110 115967422 -68321240 - MSTA LTR MaLR 0 428 111 13351 41 16 0 chr4 115967429 115969099 -68319563 + L1P LINE L1 3707 5403 -743 7157 52 1 3 chr4 115969103 115970068 -68318594 + L1PA5 LINE L1 5186 6153 -1 29 0 0 0 chr4 115970800 115970829 -68317833 + AT_rich Low_complexity Low_complexity 1 29 0 796 77 10 0 chr4 115970856 115970960 -68317702 - MSTA LTR MaLR -323 105 1 6002 133 28 26 chr4 115970960 115971983 -68316679 + Tigger1 DNA MER2_type 1394 2418 0 2017 60 0 4 chr4 115973727 115973979 -68314683 + AluY SINE Alu 46 296 -15 15798 28 0 0 chr4 115973981 115975881 -68312781 + L1P LINE L1 2286 4185 -1961 252 341 78 71 chr4 115975892 115976147 -68312515 + L2 LINE L2 3007 3263 -9 8893 37 1 7 chr4 115976189 115978056 -68310606 + L1PA4 LINE L1 4293 6154 -1 257 289 132 8 chr4 115978331 115978452 -68310210 - L2 LINE L2 0 3272 3137 805 339 68 30 chr4 115979220 115980114 -68308548 + ERVL LTR ERVL 4165 5124 -640 740 349 33 28 chr4 115980205 115980603 -68308059 - LTR16C LTR ERVL -17 474 75 1057 266 67 77 chr4 115981005 115981423 -68307239 + LTR16C LTR ERVL 73 486 -5 192 40 0 0 chr4 115982223 115982248 -68306414 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1554 210 56 43 chr4 115982331 115982792 -68305870 + MLT1C LTR MaLR 1 467 0 2404 215 63 5 chr4 115982865 115983470 -68305192 + L1M4 LINE L1 4348 4987 -1159 1793 209 61 35 chr4 115983471 115983960 -68304702 - MER92B LTR ERV1 -78 558 57 373 45 0 0 chr4 115983964 115984008 -68304654 - L1PA5 LINE L1 -1170 4976 4933 7125 45 7 0 chr4 115984008 115985181 -68303481 + L1PA5 LINE L1 4964 6142 -12 505 69 23 0 chr4 115985181 115985268 -68303394 + (TA)n Simple_repeat Simple_repeat 1 89 0 251 146 24 0 chr4 115985292 115985333 -68303329 - MER92B LTR ERV1 -592 44 3 449 100 0 0 chr4 115985825 115985895 -68302767 + AluSc SINE Alu 240 309 0 2224 105 23 7 chr4 115986055 115986361 -68302301 + AluSq SINE Alu 1 311 -2 25 31 0 0 chr4 115986767 115986799 -68301863 + AT_rich Low_complexity Low_complexity 1 32 0 219 139 0 0 chr4 115987212 115987248 -68301414 + (CA)n Simple_repeat Simple_repeat 1 36 0 4277 80 2 17 chr4 115987543 115988144 -68300518 - L1PA10 LINE L1 -1 6167 5576 1543 83 14 9 chr4 115988144 115988360 -68300302 + L1PA10 LINE L1 5850 6066 -102 191 225 0 0 chr4 115989536 115989576 -68299086 + MIR SINE MIR 77 116 -92 35 63 0 0 chr4 115989680 115989743 -68298919 + AT_rich Low_complexity Low_complexity 1 63 0 1080 247 184 49 chr4 115990057 115990502 -68298160 + MLT1C LTR MaLR 1 467 0 428 337 47 0 chr4 115990502 115990674 -68297988 - MIR SINE MIR -63 199 20 1703 223 30 26 chr4 115991344 115991805 -68296857 - L1ME1 LINE L1 -4 6162 5700 1026 229 29 5 chr4 115991929 115992139 -68296523 + MER20 DNA MER1_type 2 216 -3 708 183 0 8 chr4 115992187 115992313 -68296349 + MLT1A2 LTR MaLR 1 125 -240 225 0 0 0 chr4 115992313 115992338 -68296324 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 964 147 90 6 chr4 115992342 115992519 -68296143 - AluJo SINE Alu -30 282 91 866 232 97 5 chr4 115992535 115992742 -68295920 + MLT1A2 LTR MaLR 149 374 0 23 0 0 0 chr4 115992766 115992789 -68295873 + AT_rich Low_complexity Low_complexity 1 23 0 533 296 91 14 chr4 115993390 115993610 -68295052 + MIR SINE MIR 20 256 -6 21 0 0 0 chr4 115993888 115993909 -68294753 + AT_rich Low_complexity Low_complexity 1 21 0 2277 85 0 7 chr4 115994277 115994584 -68294078 + AluSq SINE Alu 1 305 -8 238 169 14 42 chr4 115994584 115994645 -68294017 + GA-rich Low_complexity Low_complexity 12 72 0 192 77 0 0 chr4 115994930 115994956 -68293706 + (A)n Simple_repeat Simple_repeat 1 26 0 245 322 168 28 chr4 115995518 115995732 -68292930 + L2 LINE L2 2835 3078 -194 231 154 0 0 chr4 115997411 115997450 -68291212 + MER110A LTR ERV1 423 461 -7 381 167 89 0 chr4 115998111 115998201 -68290461 - Tigger7 DNA MER2_type -1 2586 2489 * 1432 185 22 54 chr4 115998199 115998374 -68290288 - Tigger7 DNA MER2_type -466 267 103 2064 139 0 0 chr4 115998374 115998669 -68289993 - AluSg SINE Alu -15 295 1 1432 185 22 54 chr4 115998669 115998769 -68289893 - Tigger7 DNA MER2_type -630 103 1 518 319 78 26 chr4 115998777 115999276 -68289386 - L1MC4a LINE L1 -1978 5830 5306 25 0 0 0 chr4 115999972 115999997 -68288665 + AT_rich Low_complexity Low_complexity 1 25 0 2532 241 17 49 chr4 116000412 116001043 -68287619 + L1PA15 LINE L1 53 663 -6176 14817 212 23 20 chr4 116001054 116005932 -68282730 + L1PA15 LINE L1 1951 6866 -2 1034 195 22 35 chr4 116006112 116006338 -68282324 - Tigger2a DNA MER2_type -210 224 2 29 78 0 0 chr4 116006509 116006573 -68282089 + AT_rich Low_complexity Low_complexity 1 64 0 2032 110 50 0 chr4 116007888 116008170 -68280492 + AluSx SINE Alu 1 296 -16 267 114 0 0 chr4 116008296 116008340 -68280322 + (TA)n Simple_repeat Simple_repeat 2 45 0 1358 134 0 56 chr4 116008474 116008705 -68279957 + MER1B DNA MER1_type 122 339 0 30 0 0 0 chr4 116009011 116009041 -68279621 + AT_rich Low_complexity Low_complexity 1 30 0 231 146 0 0 chr4 116010150 116010191 -68278471 + (GA)n Simple_repeat Simple_repeat 2 42 0 494 319 106 25 chr4 116011879 116012114 -68276548 + MLT1J LTR MaLR 1 254 -257 776 243 12 6 chr4 116012132 116012305 -68276357 - MER77 LTR ERV1 -1 604 431 * 922 156 48 6 chr4 116012296 116012463 -68276199 - MLT1A1 LTR MaLR -191 174 1 6821 203 7 37 chr4 116012879 116013703 -68274959 + L1PB1 LINE L1 2137 2887 -3259 2440 81 0 0 chr4 116013703 116014011 -68274651 + AluY SINE Alu 1 308 -3 6821 203 7 37 chr4 116014011 116014864 -68273798 + L1PB1 LINE L1 2887 3764 -2382 5507 138 38 35 chr4 116014876 116016276 -68272386 + L1PB1 LINE L1 4766 6150 -1 213 39 0 0 chr4 116016358 116016384 -68272278 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1315 205 91 28 chr4 116016389 116016502 -68272160 + MER45B DNA AcHobo 656 760 -821 2329 102 0 9 chr4 116016502 116016817 -68271845 - AluSx SINE Alu 0 312 1 1315 205 91 28 chr4 116016817 116017064 -68271598 + MER45B DNA AcHobo 760 1039 -1 1698 207 48 30 chr4 116017238 116017677 -68270985 - MLT1D LTR MaLR 0 505 59 558 323 93 53 chr4 116018918 116019696 -68268966 + L2 LINE L2 2493 3313 0 817 318 151 34 chr4 116019786 116020658 -68268004 - HAL1 LINE L1 -1209 1298 325 465 304 19 31 chr4 116021027 116021188 -68267474 + MIR3 SINE MIR 32 190 -18 187 264 88 44 chr4 116021608 116021699 -68266963 - MIR SINE MIR -156 106 12 399 321 119 26 chr4 116022631 116022933 -68265729 - MLT1K LTR MaLR -70 518 189 252 278 77 57 chr4 116022984 116023232 -68265430 - MER112 DNA MER1_type -1 259 7 305 380 63 13 chr4 116023728 116023886 -68264776 + MIR3 SINE MIR 5 170 -38 329 309 130 6 chr4 116024289 116024451 -68264211 + MIR SINE MIR 66 247 -15 1322 308 24 10 chr4 116025404 116025819 -68262843 - LTR16A LTR ERVL -5 445 25 349 375 43 13 chr4 116026521 116026756 -68261906 + MIR SINE MIR 2 243 -19 305 234 31 0 chr4 116027504 116027568 -68261094 - Charlie8 DNA MER1_type -13 2404 2339 2119 135 23 47 chr4 116028271 116028655 -68260007 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr4 116030646 116030667 -68257995 + AT_rich Low_complexity Low_complexity 1 21 0 2088 150 15 158 chr4 116030753 116031286 -68257376 + LTR32 LTR ERVL 15 471 0 1815 206 60 26 chr4 116031856 116032308 -68256354 + MLT1C LTR MaLR 1 467 0 2248 223 69 27 chr4 116032804 116033356 -68255306 - MER119 DNA MER1_type -8 575 1 2058 152 126 5 chr4 116034084 116034466 -68254196 - MSTA LTR MaLR 0 428 1 433 315 16 8 chr4 116034577 116034704 -68253958 + MIR SINE MIR 18 145 -63 26 0 0 0 chr4 116034704 116034730 -68253932 + AT_rich Low_complexity Low_complexity 1 26 0 947 150 38 15 chr4 116034992 116035255 -68253407 + L1PA6 LINE L1 5684 5830 -324 2149 118 36 38 chr4 116035563 116035928 -68252734 - THE1B LTR MaLR 0 364 1 29 0 0 0 chr4 116036352 116036381 -68252281 + AT_rich Low_complexity Low_complexity 1 29 0 555 310 84 31 chr4 116036381 116036736 -68251926 + L1ME4a LINE L1 5391 5764 -357 269 253 24 0 chr4 116036765 116036848 -68251814 + (TA)n Simple_repeat Simple_repeat 1 85 0 336 282 106 53 chr4 116040615 116040785 -68247877 - MER5A DNA MER1_type -9 180 2 183 250 42 21 chr4 116040793 116040841 -68247821 - MIR SINE MIR -144 64 16 25 0 0 0 chr4 116041270 116041295 -68247367 + AT_rich Low_complexity Low_complexity 1 25 0 2140 148 53 11 chr4 116042139 116042517 -68246145 - MSTD LTR MaLR 0 396 3 1817 120 100 26 chr4 116043471 116043820 -68244842 + THE1C LTR MaLR 1 375 0 23 54 0 0 chr4 116044039 116044076 -68244586 + AT_rich Low_complexity Low_complexity 1 37 0 386 255 62 21 chr4 116044246 116044391 -68244271 + L1ME4a LINE L1 5968 6118 -3 461 335 101 36 chr4 116044514 116044677 -68243985 - MLT1J LTR MaLR -144 367 216 2082 221 64 66 chr4 116044677 116045125 -68243537 - MLT1E LTR MaLR 0 593 145 576 0 0 0 chr4 116045125 116045189 -68243473 + (CATAA)n Simple_repeat Simple_repeat 3 66 0 2082 221 64 66 chr4 116045189 116045334 -68243328 - MLT1E LTR MaLR -448 145 1 461 335 101 36 chr4 116045334 116045507 -68243155 - MLT1J LTR MaLR -295 216 9 217 372 0 0 chr4 116045927 116046005 -68242657 - MIR SINE MIR -151 111 34 950 193 16 5 chr4 116048145 116048332 -68240330 + MER5A DNA MER1_type 1 189 0 2181 118 7 0 chr4 116049145 116049449 -68239213 - AluSx SINE Alu -2 310 5 2115 134 0 0 chr4 116049726 116050024 -68238638 + AluSx SINE Alu 3 300 -12 282 56 0 0 chr4 116050026 116050062 -68238600 + (TA)n Simple_repeat Simple_repeat 2 37 0 518 265 131 88 chr4 116051304 116051365 -68237297 - MLT1K LTR MaLR -14 574 517 2203 83 3 0 chr4 116051365 116051655 -68237007 + AluY SINE Alu 1 291 -20 518 265 131 88 chr4 116051655 116052141 -68236521 - MLT1K LTR MaLR -71 517 3 334 266 156 111 chr4 116052513 116052866 -68235796 - L1M2 LINE L1 -5826 1023 655 312 297 40 0 chr4 116056151 116056252 -68232410 + MIR SINE MIR 42 146 -62 784 280 63 21 chr4 116056414 116056653 -68232009 - MIR SINE MIR -13 249 1 203 260 0 20 chr4 116056762 116056812 -68231850 - L2 LINE L2 0 3313 3265 561 349 86 28 chr4 116058538 116059180 -68229482 - L2 LINE L2 -1 3312 2630 283 214 80 54 chr4 116059218 116059330 -68229332 - L2 LINE L2 -918 2396 2282 367 353 35 12 chr4 116059370 116059543 -68229119 - L2 LINE L2 -1009 2305 2129 258 298 84 0 chr4 116059779 116059809 -68228853 - MIR SINE MIR -30 232 206 1648 154 23 23 chr4 116059809 116059971 -68228691 - AluJb SINE Alu -13 299 135 429 76 0 0 chr4 116059971 116060037 -68228625 + (TA)n Simple_repeat Simple_repeat 1 66 0 1648 154 23 23 chr4 116060037 116060173 -68228489 - AluJb SINE Alu -176 136 1 258 298 84 0 chr4 116060173 116060273 -68228389 - MIR SINE MIR -56 206 91 300 264 14 0 chr4 116060349 116060421 -68228241 + MIR SINE MIR 40 112 -150 261 57 0 0 chr4 116061988 116062023 -68226639 + (TC)n Simple_repeat Simple_repeat 2 36 0 190 368 0 26 chr4 116062464 116062540 -68226122 - L2 LINE L2 -44 3228 3155 2266 152 16 21 chr4 116063770 116064151 -68224511 - MSTD LTR MaLR -14 382 4 1000 330 35 39 chr4 116065086 116065717 -68222945 + L1PA16 LINE L1 1 1405 -6169 491 212 0 0 chr4 116065827 116065926 -68222736 + L1PA16 LINE L1 2084 2182 -5399 14274 248 27 22 chr4 116066153 116070747 -68217915 + L1PA16 LINE L1 2182 6797 -787 564 175 44 0 chr4 116070745 116070859 -68217803 + L1 LINE L1 4140 4258 -1888 * 4956 135 19 5 chr4 116070867 116071666 -68216996 + L1PA16 LINE L1 6785 7594 -10 23 0 0 0 chr4 116074760 116074783 -68213879 + AT_rich Low_complexity Low_complexity 1 23 0 205 375 12 0 chr4 116075733 116075813 -68212849 - L2 LINE L2 0 3313 3233 626 368 86 33 chr4 116076125 116077013 -68211649 - L2 LINE L2 -657 2657 1723 265 154 0 0 chr4 116077016 116077055 -68211607 + MER81 DNA DNA 1 39 -75 27 62 0 0 chr4 116077173 116077221 -68211441 + AT_rich Low_complexity Low_complexity 1 48 0 369 0 0 0 chr4 116077730 116077771 -68210891 + (TG)n Simple_repeat Simple_repeat 1 41 0 437 301 77 26 chr4 116079349 116079805 -68208857 - L1MEc LINE L1 -3637 2578 2148 711 258 279 16 chr4 116080133 116080543 -68208119 + L2 LINE L2 2638 3153 -160 345 258 52 0 chr4 116080597 116080694 -68207968 - MER63 DNA MER1_type -106 730 3 322 71 0 0 chr4 116080722 116080764 -68207898 + MADE1 DNA Mariner 1 42 -38 485 207 112 26 chr4 116080774 116080890 -68207772 + L2 LINE L2 3188 3313 0 2298 140 34 0 chr4 116080921 116081307 -68207355 - MER57A LTR ERV1 0 403 5 257 194 56 28 chr4 116081338 116081410 -68207252 - HAL1 LINE L1 -838 1669 1596 183 129 0 0 chr4 116081580 116081611 -68207051 + (TC)n Simple_repeat Simple_repeat 2 32 0 2209 101 3 0 chr4 116082046 116082342 -68206320 + AluSp SINE Alu 3 299 -14 644 274 106 18 chr4 116082774 116083000 -68205662 - MIR SINE MIR -3 259 14 28 0 0 0 chr4 116083669 116083697 -68204965 + AT_rich Low_complexity Low_complexity 1 28 0 2152 180 57 36 chr4 116083823 116084318 -68204344 - MLT1D LTR MaLR 0 505 1 586 34 115 9 chr4 116085195 116085518 -68203144 + (TA)n Simple_repeat Simple_repeat 1 357 0 506 59 95 14 chr4 116085553 116085781 -68202881 + (TA)n Simple_repeat Simple_repeat 1 246 0 1224 98 5 16 chr4 116086569 116086753 -68201909 + L1PA8 LINE L1 5991 6172 0 606 195 102 0 chr4 116086988 116087106 -68201556 - FLAM_A SINE Alu 0 133 4 227 303 131 62 chr4 116087360 116087505 -68201157 - MER5A DNA MER1_type -31 158 4 22 35 0 0 chr4 116087599 116087628 -68201034 + AT_rich Low_complexity Low_complexity 1 29 0 32 0 0 0 chr4 116088318 116088350 -68200312 + AT_rich Low_complexity Low_complexity 1 32 0 226 169 117 0 chr4 116088549 116088626 -68200036 - L1P LINE L1 -768 5383 5298 21 71 0 0 chr4 116088724 116088766 -68199896 + AT_rich Low_complexity Low_complexity 1 42 0 204 299 69 23 chr4 116088959 116089046 -68199616 + MIR3 SINE MIR 111 201 -7 3559 40 2 133 chr4 116089463 116090041 -68198621 - L1PA5 LINE L1 0 6154 5653 4939 118 29 8 chr4 116090072 116090838 -68197824 - L1PA15 LINE L1 -4 6812 6031 14296 222 27 19 chr4 116090838 116093717 -68194945 - L1PA15 LINE L1 -1287 5510 2585 7057 55 0 3 chr4 116093717 116094782 -68193880 - L1PA6 LINE L1 0 6154 5087 14296 222 27 19 chr4 116094782 116096141 -68192521 - L1PA15 LINE L1 -4212 2585 1238 292 293 89 8 chr4 116096145 116096268 -68192394 - L1PA12 LINE L1 -5235 2346 2214 283 332 97 18 chr4 116096921 116097147 -68191515 - L1PA12 LINE L1 -7331 250 7 2091 103 21 3 chr4 116097285 116097575 -68191087 + AluSg SINE Alu 1 295 -15 368 308 96 6 chr4 116097581 116097737 -68190925 + MIR SINE MIR 49 218 -44 1269 300 58 44 chr4 116097904 116098767 -68189895 - L2 LINE L2 -3 3310 2438 360 286 40 32 chr4 116098871 116098997 -68189665 + MIR SINE MIR 100 226 -36 712 289 139 0 chr4 116099001 116099281 -68189381 - L2 LINE L2 -893 2421 2103 378 299 91 13 chr4 116099808 116099962 -68188700 + MIR SINE MIR 29 194 -68 390 242 11 11 chr4 116099964 116100055 -68188607 - LTR40b LTR ERVL -196 266 176 2058 225 50 11 chr4 116101070 116101545 -68187117 - LTR40a LTR ERVL 0 519 26 2188 130 119 8 chr4 116101548 116101933 -68186729 - MSTA LTR MaLR 0 428 1 476 264 22 60 chr4 116102123 116102305 -68186357 + MIR SINE MIR 88 262 0 358 289 142 50 chr4 116102460 116102678 -68185984 - MIR SINE MIR -6 256 19 998 237 14 28 chr4 116102880 116103163 -68185499 + L1MA9 LINE L1 5996 6274 -38 2126 75 4 14 chr4 116103654 116103935 -68184727 + AluY SINE Alu 1 278 -33 189 0 0 0 chr4 116103938 116103959 -68184703 + (CAA)n Simple_repeat Simple_repeat 2 22 0 23 0 0 0 chr4 116104118 116104141 -68184521 + AT_rich Low_complexity Low_complexity 1 23 0 349 299 78 42 chr4 116105908 116106075 -68182587 + MIR SINE MIR 49 221 -41 481 141 0 0 chr4 116109815 116109893 -68178769 + AluSg/x SINE Alu 219 296 -14 1139 157 9 45 chr4 116109903 116110126 -68178536 + L1PA15 LINE L1 5949 6163 -2 275 48 0 24 chr4 116110858 116110900 -68177762 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1063 25 0 0 chr4 116110900 116111022 -68177640 - L1PA5 LINE L1 -22 6132 6011 347 333 54 27 chr4 116111023 116111170 -68177492 - MIR SINE MIR -98 164 14 971 304 64 36 chr4 116111492 116111930 -68176732 - L2 LINE L2 -1 3312 2863 26 30 0 0 chr4 116112013 116112046 -68176616 + AT_rich Low_complexity Low_complexity 1 33 0 253 306 0 0 chr4 116112154 116112216 -68176446 + L2 LINE L2 3207 3268 -4 1445 186 39 96 chr4 116112587 116112974 -68175688 - MLT1A1 LTR MaLR 0 365 1 1015 288 45 82 chr4 116113490 116113745 -68174917 - L2 LINE L2 -1 3312 3084 741 138 55 7 chr4 116113745 116113890 -68174772 + L1MA9 LINE L1 6156 6307 -5 1015 288 45 82 chr4 116113890 116114161 -68174501 - L2 LINE L2 -229 3084 2805 3113 174 30 3 chr4 116114394 116115005 -68173657 - L1MB5 LINE L1 -12 6162 5536 391 238 0 12 chr4 116115071 116115151 -68173511 - Tigger5 DNA MER2_type -2244 79 1 26 0 0 0 chr4 116115297 116115323 -68173339 + AT_rich Low_complexity Low_complexity 1 26 0 489 62 0 0 chr4 116115475 116115540 -68173122 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 1811 224 13 65 chr4 116115541 116116019 -68172643 - MLT2B1 LTR ERVL -67 453 1 330 327 131 6 chr4 116116295 116116463 -68172199 + MER5A DNA MER1_type 1 189 0 332 308 115 0 chr4 116116676 116116780 -68171882 - L2 LINE L2 -7 3265 3150 399 289 44 72 chr4 116117855 116118073 -68170589 - MIR SINE MIR -29 233 17 2104 195 85 29 chr4 116118827 116119319 -68169343 + MLT2B1 LTR ERVL 1 520 0 257 302 47 31 chr4 116119519 116119648 -68169014 + MIR SINE MIR 23 153 -109 825 173 0 0 chr4 116120404 116120531 -68168131 - Tigger3(Golem) DNA MER2_type -2 3027 2901 238 323 0 0 chr4 116120527 116120589 -68168073 - Tigger3(Golem) DNA MER2_type -2966 63 2 * 620 200 34 23 chr4 116120613 116120788 -68167874 + L1ME4a LINE L1 5706 5882 -239 35 41 0 0 chr4 116120945 116120994 -68167668 + AT_rich Low_complexity Low_complexity 1 49 0 219 88 0 0 chr4 116123110 116123144 -68165518 + (CAGAGA)n Simple_repeat Simple_repeat 3 36 0 227 230 96 67 chr4 116123942 116124077 -68164585 + L2 LINE L2 3033 3171 -142 410 262 25 0 chr4 116124125 116124247 -68164415 - L1ME3A LINE L1 -8 6162 6038 195 129 0 0 chr4 116174367 116174398 -68114264 + (TA)n Simple_repeat Simple_repeat 1 31 0 188 163 0 41 chr4 116174511 116174560 -68114102 + GA-rich Low_complexity Low_complexity 2 48 0 12001 180 37 10 chr4 116175424 116177539 -68111123 - L1M1 LINE L1 -5376 2189 19 767 340 114 40 chr4 116177715 116178602 -68110060 - L2 LINE L2 -9 3304 2354 416 291 70 17 chr4 116179408 116179580 -68109082 - MIR SINE MIR -80 182 2 745 176 99 7 chr4 116179619 116179761 -68108901 + FRAM SINE Alu 1 152 -24 362 158 12 24 chr4 116180067 116180149 -68108513 + L1PA16 LINE L1 6085 6165 -1 251 305 38 9 chr4 116180739 116180844 -68107818 - L2 LINE L2 -463 2851 2744 2319 129 13 24 chr4 116184425 116184804 -68103858 - THE1C LTR MaLR 0 375 1 21 82 0 0 chr4 116185844 116185893 -68102769 + AT_rich Low_complexity Low_complexity 1 49 0 232 48 48 0 chr4 116186316 116186358 -68102304 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 21 36 0 0 chr4 116187914 116187942 -68100720 + AT_rich Low_complexity Low_complexity 1 28 0 2380 75 0 0 chr4 116188066 116188359 -68100303 - AluY SINE Alu -18 293 1 22 35 0 0 chr4 116189402 116189431 -68099231 + AT_rich Low_complexity Low_complexity 1 29 0 252 300 55 9 chr4 116189827 116189937 -68098725 + MER117 DNA MER1_type 80 194 -3 22 35 0 0 chr4 116190816 116190845 -68097817 + AT_rich Low_complexity Low_complexity 1 29 0 2314 87 0 0 chr4 116191828 116192117 -68096545 + AluY SINE Alu 1 289 -22 11676 25 0 0 chr4 116192698 116194074 -68094588 - L1PA3 LINE L1 -1125 5021 3646 7838 18 0 0 chr4 116194074 116195212 -68093450 + L1PA3 LINE L1 5018 6155 0 200 167 48 0 chr4 116195222 116195264 -68093398 + A-rich Low_complexity Low_complexity 2 45 0 263 377 72 31 chr4 116195617 116195840 -68092822 + L2 LINE L2 2993 3224 -48 476 193 0 0 chr4 116196266 116196354 -68092308 - Tigger7 DNA MER2_type -588 117 30 346 227 71 65 chr4 116197051 116197205 -68091457 + L2 LINE L2 3159 3313 0 2147 96 0 3 chr4 116197352 116197657 -68091005 + AluSx SINE Alu 1 304 0 276 366 93 6 chr4 116198428 116198589 -68090073 - MIR3 SINE MIR -4 204 30 2201 167 9 4 chr4 116199024 116199583 -68089079 + MER6 DNA MER2_type 1 865 0 280 391 35 62 chr4 116200067 116200323 -68088339 + L2 LINE L2 3004 3252 -20 1430 255 136 45 chr4 116200496 116201229 -68087433 + L1MC4 LINE L1 5379 6044 -1998 2136 112 13 3 chr4 116201229 116201532 -68087130 - AluY SINE Alu -5 306 1 1430 255 136 45 chr4 116201532 116202596 -68086066 + L1MC4 LINE L1 6044 7420 -622 1004 289 17 30 chr4 116202618 116202916 -68085746 + L1M3d LINE L1 413 706 -5597 301 338 10 11 chr4 116202977 116203075 -68085587 + L1M3d LINE L1 730 1090 -5213 2247 236 94 9 chr4 116203205 116203680 -68084982 + L1M3d LINE L1 796 1230 -5073 186 43 0 0 chr4 116203680 116203703 -68084959 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 2247 236 94 9 chr4 116203703 116204145 -68084517 + L1M3d LINE L1 1230 1787 -4516 1243 119 7 10 chr4 116204145 116204413 -68084249 + L1PA13 LINE L1 5160 5427 -741 * 11103 66 1 4 chr4 116204411 116205825 -68082837 - L1P LINE L1 -4727 1419 11 8228 28 1 0 chr4 116205826 116207555 -68081107 + L1PA3 LINE L1 4406 6135 -20 3549 130 12 3 chr4 116207655 116208230 -68080432 + L1PA13 LINE L1 5581 6160 -3 12558 200 52 34 chr4 116208236 116212850 -68075812 + L1MB1 LINE L1 1669 6399 -5 326 244 51 81 chr4 116212897 116213094 -68075568 + L1MC4 LINE L1 7483 7673 -369 509 236 116 87 chr4 116213143 116213231 -68075431 - MLT1F1 LTR MaLR -33 534 450 2294 101 0 0 chr4 116213231 116213529 -68075133 + AluSx SINE Alu 1 298 -14 509 236 116 87 chr4 116213529 116213933 -68074729 - MLT1F1 LTR MaLR -117 450 1 408 305 35 10 chr4 116213933 116214133 -68074529 + L1MC4 LINE L1 7698 7902 -140 2120 93 0 68 chr4 116214148 116214470 -68074192 + AluSg SINE Alu 3 302 -8 515 239 72 14 chr4 116214590 116214728 -68073934 + L2 LINE L2 2701 2846 -468 367 176 73 0 chr4 116214725 116214793 -68073869 - L2 LINE L2 -350 2963 2891 * 369 262 150 30 chr4 116215998 116216231 -68072431 + L1ME4a LINE L1 5591 5851 -270 402 190 13 0 chr4 116216773 116216852 -68071810 - MIR SINE MIR -27 235 156 208 206 0 0 chr4 116216852 116216886 -68071776 + (TG)n Simple_repeat Simple_repeat 1 34 0 241 360 44 0 chr4 116216908 116217022 -68071640 - MIR SINE MIR -70 192 74 27 29 0 0 chr4 116219834 116219868 -68068794 + AT_rich Low_complexity Low_complexity 1 34 0 431 92 69 11 chr4 116219895 116219982 -68068680 + L1PA12 LINE L1 6077 6168 0 450 187 252 0 chr4 116220198 116220321 -68068341 + MER105 DNA DNA 7 160 -44 4135 173 4 1 chr4 116221886 116222610 -68066052 - L1MB2 LINE L1 -2 6169 5444 433 136 123 0 chr4 116222633 116222714 -68065948 - LTR40b LTR ERVL -27 435 345 1133 238 20 12 chr4 116222753 116223005 -68065657 - LTR40a LTR ERVL -251 268 15 2409 146 0 0 chr4 116223814 116224190 -68064472 - L1PA16 LINE L1 -2 6164 5789 251 217 0 0 chr4 116224204 116224250 -68064412 - MER31A LTR ERV1 -406 79 34 365 225 12 0 chr4 116224250 116224330 -68064332 - MER41-int LTR ERV1 -4135 988 908 1947 197 39 163 chr4 116224618 116225416 -68063246 - MER41-int LTR ERV1 -4091 2240 1542 824 176 23 11 chr4 116225428 116225604 -68063058 - MER41-int LTR ERV1 -3562 1374 1197 689 158 51 57 chr4 116225618 116225776 -68062886 - MER41-int LTR ERV1 -4802 1529 1373 353 138 38 38 chr4 116225974 116226054 -68062608 - MER41-int LTR ERV1 -4954 1377 1298 899 245 177 15 chr4 116226074 116226470 -68062192 - MER41-int LTR ERV1 -5511 820 361 343 197 0 28 chr4 116226474 116226545 -68062117 - MER41-int LTR ERV1 -4558 1388 1320 1859 161 74 11 chr4 116227933 116228303 -68060359 + MLT2D LTR ERVL 5 534 -20 423 0 0 0 chr4 116228326 116228373 -68060289 + (CA)n Simple_repeat Simple_repeat 2 48 0 33 0 0 0 chr4 116229186 116229219 -68059443 + AT_rich Low_complexity Low_complexity 1 33 0 2370 147 18 18 chr4 116229245 116229639 -68059023 - MER57A LTR ERV1 -2 401 8 1413 136 40 0 chr4 116229656 116229884 -68058778 - MER57A-int LTR ERV1 -29 7508 7272 730 115 33 8 chr4 116229884 116230006 -68058656 - LTR54B LTR ERV1 -371 127 3 9408 143 14 14 chr4 116230006 116230035 -68058627 - MER57A-int LTR ERV1 -389 7148 7120 3339 90 18 0 chr4 116230035 116230480 -68058182 - MLT2A2 LTR ERVL 0 453 1 9408 143 14 14 chr4 116230480 116232010 -68056652 - MER57A-int LTR ERV1 -416 7121 5589 43 0 0 0 chr4 116232015 116232058 -68056604 + AT_rich Low_complexity Low_complexity 1 43 0 5752 179 37 29 chr4 116232058 116232790 -68055872 - MER57A-int LTR ERV1 -1587 4744 4019 1826 166 3 3 chr4 116232790 116233080 -68055582 - AluSx SINE Alu -22 290 1 5752 179 37 29 chr4 116233080 116234209 -68054453 - MER57A-int LTR ERV1 -2312 4019 1707 478 231 19 0 chr4 116234319 116234423 -68054239 - MER57A-int LTR ERV1 -2872 3459 3354 461 174 19 12 chr4 116234480 116234653 -68054009 - MER57A-int LTR ERV1 -2991 3340 3081 273 176 81 14 chr4 116234593 116234667 -68053995 - LTR57-int LTR ERVL -4256 1087 1009 * 404 195 48 47 chr4 116234656 116234893 -68053769 - MER57A-int LTR ERV1 -3732 1996 1295 425 173 13 0 chr4 116235034 116235109 -68053553 - MER34C LTR ERV1 -355 230 155 322 213 67 13 chr4 116235183 116235258 -68053404 - MER57A-int LTR ERV1 -4123 3414 3336 1268 112 60 0 chr4 116235312 116235527 -68053135 - L1MA2 LINE L1 -2 7721 7494 3443 157 5 0 chr4 116235533 116236432 -68052230 - L1MA2 LINE L1 -668 7055 6153 12067 184 28 9 chr4 116238630 116238964 -68049698 - L1MA2 LINE L1 -1399 6166 5840 2318 128 25 0 chr4 116238964 116239317 -68049345 + THE1B LTR MaLR 1 362 -2 12067 184 28 9 chr4 116239317 116241478 -68047184 - L1MA2 LINE L1 -1725 5840 3622 2323 102 0 0 chr4 116241533 116241827 -68046835 - AluSc SINE Alu -15 294 1 15158 136 31 6 chr4 116241830 116244280 -68044382 - L1MA2 LINE L1 -3935 3630 1119 923 138 28 17 chr4 116244327 116244508 -68044154 - MER57A-int LTR ERV1 -6696 841 659 8641 196 17 10 chr4 116244513 116245921 -68042741 - L1PA16 LINE L1 0 6166 4769 197 33 33 0 chr4 116245921 116245951 -68042711 + (TAG)n Simple_repeat Simple_repeat 1 31 0 8641 196 17 10 chr4 116245951 116247334 -68041328 - L1PA16 LINE L1 -1397 4769 3357 3583 165 30 40 chr4 116247334 116248013 -68040649 - MER57A-int LTR ERV1 -6865 672 1 2396 144 7 20 chr4 116248021 116248425 -68040237 - MER57A LTR ERV1 -4 399 1 228 268 14 0 chr4 116248425 116248496 -68040166 + (TA)n Simple_repeat Simple_repeat 2 73 0 238 300 46 18 chr4 116249372 116249508 -68039154 + MIR SINE MIR 2 176 -86 2306 44 7 0 chr4 116249557 116249828 -68038834 - AluY SINE Alu -9 302 30 196 330 89 36 chr4 116250088 116250200 -68038462 - L2 LINE L2 -241 3031 2914 206 402 108 16 chr4 116250228 116250479 -68038183 - L2 LINE L2 -453 2861 2588 841 254 148 29 chr4 116250480 116250791 -68037871 + L1MC4a LINE L1 5521 5868 -1940 28 0 0 0 chr4 116250791 116250819 -68037843 + AT_rich Low_complexity Low_complexity 1 28 0 279 0 0 0 chr4 116250874 116250905 -68037757 + (CA)n Simple_repeat Simple_repeat 2 32 0 24 0 0 0 chr4 116252505 116252529 -68036133 + AT_rich Low_complexity Low_complexity 1 24 0 2471 81 0 0 chr4 116254208 116254506 -68034156 + AluSc SINE Alu 1 298 -11 1255 248 32 27 chr4 116255168 116255631 -68033031 - Charlie7 DNA MER1_type -1889 723 203 458 263 90 8 chr4 116255704 116255837 -68032825 + MER69 DNA AcHobo 156 299 -927 21 36 0 0 chr4 116255900 116255928 -68032734 + AT_rich Low_complexity Low_complexity 1 28 0 1145 223 0 17 chr4 116256068 116256306 -68032356 + AluJb SINE Alu 48 281 -31 22 35 0 0 chr4 116256317 116256346 -68032316 + AT_rich Low_complexity Low_complexity 1 29 0 310 224 0 26 chr4 116256654 116256730 -68031932 - MIR SINE MIR -13 249 176 471 282 28 58 chr4 116257120 116257411 -68031251 + L1ME4a LINE L1 5595 5876 -245 48 60 0 0 chr4 116257459 116257542 -68031120 + AT_rich Low_complexity Low_complexity 1 83 0 188 368 118 39 chr4 116257687 116257891 -68030771 - L2 LINE L2 -9 3263 3044 1310 191 27 13 chr4 116258066 116258364 -68030298 + MER33 DNA MER1_type 23 324 0 287 371 73 21 chr4 116258369 116258655 -68030007 - L2 LINE L2 -639 2675 2375 529 221 8 57 chr4 116258664 116258786 -68029876 - L2 LINE L2 0 3313 3198 554 366 153 28 chr4 116258806 116260094 -68028568 - L2 LINE L2 -949 2365 917 633 245 43 58 chr4 116260167 116260355 -68028307 - MIR SINE MIR -15 247 63 13295 112 82 1 chr4 116261596 116264390 -68024272 + L1PA10 LINE L1 3274 6167 -1 433 312 46 12 chr4 116264752 116264925 -68023737 + MER5A DNA MER1_type 7 185 -4 22 0 0 0 chr4 116265721 116265743 -68022919 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr4 116266819 116266850 -68021812 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 116267749 116267770 -68020892 + AT_rich Low_complexity Low_complexity 1 21 0 1075 233 31 27 chr4 116269114 116269372 -68019290 - MIR SINE MIR 0 262 4 2636 40 0 3 chr4 116271374 116271676 -68016986 - AluY SINE Alu -8 303 3 1293 201 52 34 chr4 116272350 116272678 -68015984 - L1ME1 LINE L1 -4 6162 5829 2149 116 3 0 chr4 116272785 116273078 -68015584 + AluSx SINE Alu 1 294 -18 505 302 29 34 chr4 116273705 116273910 -68014752 - MIR SINE MIR -39 223 20 725 216 49 27 chr4 116273990 116274058 -68014604 + MER5A DNA MER1_type 1 66 -123 2405 67 0 7 chr4 116274058 116274358 -68014304 + AluY SINE Alu 1 298 -13 725 216 49 27 chr4 116274358 116274474 -68014188 + MER5A DNA MER1_type 66 189 0 22 70 0 0 chr4 116274707 116274750 -68013912 + AT_rich Low_complexity Low_complexity 1 43 0 2331 91 0 0 chr4 116274820 116275118 -68013544 + AluSx SINE Alu 1 298 -14 21 36 0 0 chr4 116275981 116276009 -68012653 + AT_rich Low_complexity Low_complexity 1 28 0 1423 206 22 35 chr4 116276114 116276474 -68012188 + AluJo SINE Alu 1 356 0 199 361 76 0 chr4 116276482 116276601 -68012061 - MIR3 SINE MIR -78 130 3 1852 174 0 7 chr4 116277896 116278200 -68010462 + AluJo SINE Alu 1 302 -10 2151 121 7 0 chr4 116278514 116278812 -68009850 + AluSx SINE Alu 1 300 -12 189 0 0 0 chr4 116278812 116278833 -68009829 + (GGAA)n Simple_repeat Simple_repeat 3 23 0 185 312 65 21 chr4 116279106 116279199 -68009463 - L2 LINE L2 -8 3264 3168 204 154 0 58 chr4 116281201 116281253 -68007409 + A-rich Low_complexity Low_complexity 4 52 0 676 234 76 23 chr4 116281343 116281514 -68007148 - MER58A DNA MER1_type -19 205 26 1290 163 48 80 chr4 116281593 116281882 -68006780 + AluJo SINE Alu 1 280 -32 851 66 29 7 chr4 116281882 116282018 -68006644 + (GAAA)n Simple_repeat Simple_repeat 2 140 0 190 282 148 47 chr4 116282376 116282525 -68006137 - L2 LINE L2 -1 3312 3149 1436 183 104 31 chr4 116282612 116282995 -68005667 - LTR65 LTR ERV1 -91 578 168 817 126 178 0 chr4 116284972 116285146 -68003516 - MER3 DNA MER1_type -4 205 1 335 202 349 0 chr4 116286562 116286691 -68001971 - MER96 DNA MER1_type? -1 174 1 462 281 69 19 chr4 116289562 116289722 -67998940 - MIR SINE MIR -79 183 16 1405 202 62 16 chr4 116289927 116290018 -67998644 + L1MB8 LINE L1 5402 5487 -679 1596 119 116 54 chr4 116290018 116290090 -67998572 - THE1C LTR MaLR 0 375 309 2100 125 10 3 chr4 116290090 116290401 -67998261 + AluSq SINE Alu 1 313 0 1596 119 116 54 chr4 116290401 116290681 -67997981 - THE1C LTR MaLR -66 309 1 1405 202 62 16 chr4 116290681 116290961 -67997701 + L1MB8 LINE L1 5487 5790 -376 416 231 115 86 chr4 116290988 116291036 -67997626 + L1MB8 LINE L1 5927 5972 -206 2135 106 0 0 chr4 116291036 116291349 -67997313 + AluSq SINE Alu 1 313 0 416 231 115 86 chr4 116291349 116291540 -67997122 + L1MB8 LINE L1 5972 6176 -2 2281 110 0 0 chr4 116291835 116292136 -67996526 + AluSx SINE Alu 1 301 -11 303 28 0 0 chr4 116293493 116293529 -67995133 + (CA)n Simple_repeat Simple_repeat 1 36 0 2724 215 81 47 chr4 116293545 116294254 -67994408 - L1ME1 LINE L1 -2 6176 5493 2314 95 3 0 chr4 116294254 116294550 -67994112 - AluSp SINE Alu -16 297 1 2724 215 81 47 chr4 116294550 116294855 -67993807 - L1ME1 LINE L1 -685 5493 5200 278 25 0 25 chr4 116294855 116294895 -67993767 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2235 40 0 0 chr4 116294897 116295149 -67993513 - AluY SINE Alu -16 295 44 2724 215 81 47 chr4 116295149 116295792 -67992870 - L1ME1 LINE L1 -978 5200 4408 22 0 0 0 chr4 116296334 116296356 -67992306 + AT_rich Low_complexity Low_complexity 1 22 0 2366 107 0 0 chr4 116296375 116296685 -67991977 + AluSp SINE Alu 1 310 -3 2246 111 0 13 chr4 116297725 116298031 -67990631 + AluSq SINE Alu 1 302 -11 26 50 0 0 chr4 116298339 116298379 -67990283 + AT_rich Low_complexity Low_complexity 1 40 0 2158 109 0 20 chr4 116300906 116301199 -67987463 - AluSg SINE Alu -19 291 5 553 194 244 0 chr4 116303030 116303190 -67985472 + MLT2B1 LTR ERVL 224 422 -98 265 167 0 37 chr4 116303714 116303768 -67984894 - MLT2B1 LTR ERVL -5 515 464 231 204 0 0 chr4 116303768 116303822 -67984840 + (TA)n Simple_repeat Simple_repeat 1 54 0 2219 206 64 7 chr4 116303831 116304283 -67984379 - MLT2B1 LTR ERVL -42 478 1 31 44 0 0 chr4 116304867 116304912 -67983750 + AT_rich Low_complexity Low_complexity 1 45 0 12715 47 1 0 chr4 116305239 116306826 -67981836 + L1P LINE L1 3677 5265 -881 305 210 116 36 chr4 116306989 116307127 -67981535 + HAL1 LINE L1 2245 2393 -114 5761 174 27 89 chr4 116307386 116308930 -67979732 + Charlie1a DNA MER1_type 8 1455 0 308 206 250 17 chr4 116310003 116310107 -67978555 + MLT1E1 LTR MaLR 1 128 -494 483 322 54 0 chr4 116310107 116310223 -67978439 + L2 LINE L2 2483 2616 -698 2146 101 3 20 chr4 116310223 116310521 -67978141 + AluSc SINE Alu 1 293 -16 483 322 54 0 chr4 116310521 116310609 -67978053 + L2 LINE L2 2616 2698 -616 4129 130 89 106 chr4 116310609 116311950 -67976712 + pTR5 LTR ERV1 6 683 -31 815 282 133 31 chr4 116311950 116312525 -67976137 + L2 LINE L2 2676 3309 -4 35 63 0 0 chr4 116312682 116312745 -67975917 + AT_rich Low_complexity Low_complexity 1 63 0 378 276 103 0 chr4 116312808 116312924 -67975738 - MIR SINE MIR -78 184 57 564 219 271 0 chr4 116312969 116313161 -67975501 + MIR SINE MIR 17 260 -2 2143 113 17 0 chr4 116313200 116313491 -67975171 + AluSx SINE Alu 1 296 -16 226 341 8 0 chr4 116313944 116314067 -67974595 + L1M4 LINE L1 3685 3808 -2338 987 225 29 61 chr4 116314152 116314494 -67974168 - L1ME1 LINE L1 -9 6157 5827 1605 100 4 21 chr4 116314504 116314745 -67973917 - L1PA12 LINE L1 0 6168 5932 1343 122 0 5 chr4 116314792 116314988 -67973674 - AluSg/x SINE Alu -8 304 110 185 205 282 13 chr4 116315316 116315394 -67973268 - L2 LINE L2 -6 3266 3168 5306 250 121 24 chr4 116316557 116317673 -67970989 + L2 LINE L2 896 1902 -1412 1762 167 3 37 chr4 116317673 116317996 -67970666 - AluJo SINE Alu 0 312 1 5306 250 121 24 chr4 116317996 116318722 -67969940 + L2 LINE L2 1902 2917 -397 1377 220 100 23 chr4 116318724 116319074 -67969588 - MLT1E LTR MaLR -6 587 211 440 359 44 10 chr4 116319250 116319456 -67969206 + L2 LINE L2 2956 3168 -145 1253 285 74 35 chr4 116319461 116319987 -67968675 + MLT2F LTR ERVL 6 655 -8 359 266 40 40 chr4 116319992 116320116 -67968546 + L2 LINE L2 3168 3291 -22 1855 107 198 22 chr4 116320537 116320901 -67967761 + MSTA LTR MaLR 1 428 0 679 266 40 58 chr4 116320962 116321321 -67967341 + MLT1I LTR MaLR 1 398 -11 2126 186 135 27 chr4 116321321 116321833 -67966829 + MLT1F1 LTR MaLR 1 567 0 679 266 40 58 chr4 116321833 116321845 -67966817 + MLT1I LTR MaLR 398 409 0 195 314 100 0 chr4 116322149 116322219 -67966443 - L3 LINE CR1 -566 1011 935 1134 176 108 50 chr4 116322534 116322812 -67965850 + AluJb SINE Alu 1 294 -8 1220 193 168 0 chr4 116323077 116323399 -67965263 - L1MC3 LINE L1 0 7785 7410 1768 117 0 0 chr4 116323406 116323645 -67965017 - AluSq SINE Alu -74 239 1 417 295 43 79 chr4 116328872 116329201 -67959461 + L2 LINE L2 2997 3313 0 1096 156 9 61 chr4 116329331 116329562 -67959100 - MER20 DNA MER1_type 0 219 1 803 293 213 6 chr4 116329581 116330106 -67958556 + L2 LINE L2 589 1222 -2092 972 157 45 111 chr4 116330766 116331056 -67957606 + MER33 DNA MER1_type 1 257 -67 21 0 0 0 chr4 116331253 116331274 -67957388 + AT_rich Low_complexity Low_complexity 1 21 0 398 374 72 8 chr4 116331310 116331572 -67957090 + L2 LINE L2 2596 2874 -440 496 284 35 0 chr4 116331776 116331892 -67956770 + L2 LINE L2 3149 3268 -4 1638 169 27 20 chr4 116332386 116332681 -67955981 - AluJo SINE Alu -15 297 1 218 352 25 82 chr4 116335296 116335455 -67953207 - L2 LINE L2 -1 3271 3122 386 262 3 77 chr4 116335882 116336029 -67952633 - MIR SINE MIR -62 146 16 196 200 40 53 chr4 116336616 116336691 -67951971 - L3 LINE CR1 -112 1465 1392 462 277 85 129 chr4 116336805 116337196 -67951466 - L3 LINE CR1 -412 1165 805 789 114 0 41 chr4 116337196 116337319 -67951343 + L1PA8A LINE L1 6002 6119 -12 462 277 85 129 chr4 116337319 116337494 -67951168 - L3 LINE CR1 -772 805 624 297 351 90 9 chr4 116337579 116337690 -67950972 - MER5A DNA MER1_type -63 126 7 496 279 25 8 chr4 116337755 116337877 -67950785 + L2 LINE L2 3149 3272 0 1653 130 8 4 chr4 116338011 116338277 -67950385 + AluSx SINE Alu 40 306 0 589 272 88 45 chr4 116338355 116338891 -67949771 + L1MC4a LINE L1 4802 5360 -786 375 310 144 21 chr4 116338894 116339295 -67949367 + L1MC4a LINE L1 5399 5769 -397 24 0 0 0 chr4 116341701 116341725 -67946937 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4 116342284 116342306 -67946356 + AT_rich Low_complexity Low_complexity 1 22 0 236 175 16 0 chr4 116342720 116342783 -67945879 + (TA)n Simple_repeat Simple_repeat 2 65 0 2301 95 3 3 chr4 116343094 116343399 -67945263 + AluSx SINE Alu 1 305 -7 1049 179 6 0 chr4 116344607 116344780 -67943882 + AluJo SINE Alu 106 279 -33 27 29 0 0 chr4 116344921 116344955 -67943707 + AT_rich Low_complexity Low_complexity 1 34 0 26 0 0 0 chr4 116345311 116345337 -67943325 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr4 116346321 116346342 -67942320 + AT_rich Low_complexity Low_complexity 1 21 0 319 320 85 0 chr4 116346943 116347096 -67941566 + MLT1L LTR MaLR 128 293 -322 327 259 99 56 chr4 116347425 116347587 -67941075 - L1ME4a LINE L1 -210 5911 5743 1428 126 39 46 chr4 116347655 116347959 -67940703 + Charlie3 DNA MER1_type 57 2712 0 257 295 0 0 chr4 116347964 116348025 -67940637 + (CA)n Simple_repeat Simple_repeat 2 62 0 420 141 0 0 chr4 116348391 116348455 -67940207 + AluS SINE Alu 231 294 -17 1834 176 0 6 chr4 116348461 116348774 -67939888 - AluJb SINE Alu -1 311 1 35 63 0 0 chr4 116349490 116349553 -67939109 + AT_rich Low_complexity Low_complexity 1 63 0 355 264 145 25 chr4 116349727 116349886 -67938776 + MER5B DNA MER1_type 1 178 0 491 306 119 20 chr4 116350045 116350388 -67938274 - L1M4 LINE L1 -1603 4543 4167 649 260 35 56 chr4 116350521 116350859 -67937803 - L1M4 LINE L1 -2201 3945 3615 1869 121 0 0 chr4 116350924 116351188 -67937474 - AluSx SINE Alu -48 264 1 876 266 155 6 chr4 116352099 116352415 -67936247 + Charlie2 DNA MER1_type 4 366 -2496 262 205 9 45 chr4 116352416 116352528 -67936134 + Charlie2 DNA MER1_type 2231 2338 -524 336 244 0 0 chr4 116352583 116352673 -67935989 + (TATG)n Simple_repeat Simple_repeat 2 91 0 934 188 77 62 chr4 116352702 116353042 -67935620 + Charlie2 DNA MER1_type 2513 2857 -5 248 197 0 15 chr4 116353563 116353629 -67935033 + (TA)n Simple_repeat Simple_repeat 2 66 0 1975 146 70 96 chr4 116353924 116354383 -67934279 - L1MA10 LINE L1 -1 6333 5887 2032 91 53 50 chr4 116354399 116354738 -67933924 - L1MA10 LINE L1 -547 5787 5448 2599 142 14 5 chr4 116354780 116355202 -67933460 - MSTB LTR MaLR 0 426 1 662 225 93 28 chr4 116356017 116356199 -67932463 - MER82 DNA MER2_type -61 592 399 1054 202 35 43 chr4 116356199 116356456 -67932206 + MER82 DNA MER2_type 240 494 -159 408 203 89 0 chr4 116356454 116356533 -67932129 - MER82 DNA MER2_type -565 88 3 * 349 308 0 0 chr4 116357234 116357325 -67931337 + L2 LINE L2 3181 3271 -1 207 100 0 0 chr4 116357544 116357574 -67931088 + (A)n Simple_repeat Simple_repeat 1 30 0 928 157 63 153 chr4 116357799 116358099 -67930563 + MLT1B LTR MaLR 117 389 -1 2135 106 0 0 chr4 116359230 116359512 -67929150 + AluSx SINE Alu 1 282 -30 234 0 0 0 chr4 116359512 116359538 -67929124 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr4 116360154 116360175 -67928487 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 116360185 116360206 -67928456 + AT_rich Low_complexity Low_complexity 1 21 0 327 104 0 0 chr4 116360812 116360860 -67927802 + (CA)n Simple_repeat Simple_repeat 1 48 0 28 79 0 0 chr4 116362785 116362848 -67925814 + AT_rich Low_complexity Low_complexity 1 63 0 22 0 0 0 chr4 116363819 116363841 -67924821 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 116364543 116364566 -67924096 + AT_rich Low_complexity Low_complexity 1 23 0 2234 114 0 0 chr4 116365001 116365299 -67923363 + AluSx SINE Alu 1 298 -14 180 0 0 0 chr4 116365299 116365319 -67923343 + (TA)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr4 116365912 116365933 -67922729 + AT_rich Low_complexity Low_complexity 1 21 0 939 280 140 46 chr4 116367229 116367344 -67921318 + MLT1J LTR MaLR 25 128 -383 741 159 51 0 chr4 116367344 116367501 -67921161 - L1MB3 LINE L1 0 6183 6019 939 280 140 46 chr4 116367501 116367514 -67921148 + MLT1J LTR MaLR 128 138 -373 1546 203 0 25 chr4 116367514 116367829 -67920833 - AluJo SINE Alu -5 307 1 939 280 140 46 chr4 116367829 116368135 -67920527 + MLT1J LTR MaLR 138 501 -10 1651 183 7 3 chr4 116368153 116368437 -67920225 - AluJo SINE Alu -26 286 2 1863 154 0 3 chr4 116368931 116369241 -67919421 + AluJb SINE Alu 1 309 0 300 294 50 2 chr4 116369881 116370061 -67918601 + MIR SINE MIR 34 256 -6 22 70 0 0 chr4 116370286 116370329 -67918333 + AT_rich Low_complexity Low_complexity 1 43 0 2009 128 13 13 chr4 116370729 116371027 -67917635 + AluSx SINE Alu 1 298 -14 1185 193 113 19 chr4 116371279 116371590 -67917072 + MER58B DNA MER1_type 2 341 0 197 282 12 0 chr4 116371925 116372010 -67916652 + GA-rich Low_complexity Low_complexity 3 88 0 253 308 29 14 chr4 116372012 116372220 -67916442 + L1ME LINE L1 5023 5233 -913 260 294 0 20 chr4 116372269 116372371 -67916291 + (TA)n Simple_repeat Simple_repeat 1 100 0 1465 199 0 0 chr4 116372372 116372634 -67916028 - AluJb SINE Alu -23 289 28 249 254 0 18 chr4 116372650 116372764 -67915898 + L1ME LINE L1 5297 5408 -756 475 152 9 116 chr4 116373141 116373167 -67915495 - L1PA16 LINE L1 -321 5845 5818 2073 91 40 3 chr4 116373167 116373464 -67915198 - AluSg SINE Alu -2 308 1 475 152 9 116 chr4 116373464 116373549 -67915113 - L1PA16 LINE L1 -348 5818 5746 * 1237 147 57 0 chr4 116373546 116373757 -67914905 + L1PA16 LINE L1 5839 6061 -105 22 0 0 0 chr4 116373779 116373801 -67914861 + AT_rich Low_complexity Low_complexity 1 22 0 580 259 61 18 chr4 116374771 116374957 -67913705 - MIR SINE MIR -16 246 57 182 301 68 0 chr4 116375206 116375279 -67913383 + MIR SINE MIR 63 140 -122 1329 81 168 0 chr4 116375341 116375445 -67913217 + MER30 DNA MER1_type 1 86 -144 213 39 0 0 chr4 116375445 116375471 -67913191 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1329 81 168 0 chr4 116375471 116375563 -67913099 + MER30 DNA MER1_type 86 230 0 1628 183 14 3 chr4 116375623 116375912 -67912750 - AluJo SINE Alu -19 293 2 262 186 88 29 chr4 116376057 116376159 -67912503 + L1ME LINE L1 5769 5876 -245 734 199 151 32 chr4 116377201 116377276 -67911386 - AluJo SINE Alu -104 208 143 2245 106 0 0 chr4 116377276 116377577 -67911085 - AluSg SINE Alu -9 301 1 734 199 151 32 chr4 116377577 116377687 -67910975 - AluJo SINE Alu -169 143 1 253 333 150 8 chr4 116378255 116378375 -67910287 - MIR SINE MIR -124 138 2 241 263 97 40 chr4 116378651 116378826 -67909836 + L1MC4 LINE L1 7311 7495 -547 * 637 274 43 84 chr4 116378817 116379304 -67909358 + L1MC4 LINE L1 7318 7894 -148 21 36 0 0 chr4 116379331 116379359 -67909303 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 116380441 116380464 -67908198 + AT_rich Low_complexity Low_complexity 1 23 0 223 316 118 32 chr4 116381047 116381234 -67907428 + L2 LINE L2 3104 3306 -7 292 392 76 41 chr4 116381307 116381700 -67906962 - L2 LINE L2 0 3272 2866 230 271 51 0 chr4 116382390 116382449 -67906213 - L3 LINE CR1 -632 945 884 33 0 0 0 chr4 116382801 116382834 -67905828 + AT_rich Low_complexity Low_complexity 1 33 0 231 264 0 14 chr4 116384208 116384280 -67904382 + GA-rich Low_complexity Low_complexity 4 74 0 226 322 189 14 chr4 116384458 116384601 -67904061 + MIR3 SINE MIR 27 194 -14 23 33 0 0 chr4 116385500 116385530 -67903132 + AT_rich Low_complexity Low_complexity 1 30 0 204 176 20 20 chr4 116385837 116385888 -67902774 + A-rich Low_complexity Low_complexity 3 53 0 185 40 100 20 chr4 116386251 116386301 -67902361 + (TTAA)n Simple_repeat Simple_repeat 2 55 0 3312 159 42 23 chr4 116389127 116389768 -67898894 - MER39B LTR ERV1 0 653 1 2240 98 3 0 chr4 116389886 116390172 -67898490 + AluSp SINE Alu 1 287 -26 1865 176 0 19 chr4 116391592 116391910 -67896752 + AluJo SINE Alu 1 312 0 21 0 0 0 chr4 116392358 116392379 -67896283 + GC_rich Low_complexity Low_complexity 1 21 0 210 324 81 0 chr4 116392714 116392788 -67895874 + L2 LINE L2 3148 3227 -45 2020 98 17 7 chr4 116393472 116393768 -67894894 + AluSx SINE Alu 1 299 -13 832 161 0 1 chr4 116394969 116395241 -67893421 + AluJ SINE Alu 7 312 0 225 0 0 0 chr4 116396455 116396480 -67892182 + (TG)n Simple_repeat Simple_repeat 1 25 0 390 307 33 7 chr4 116396551 116396701 -67891961 + MIR SINE MIR 66 219 -43 385 271 50 111 chr4 116397148 116397259 -67891403 - L3 LINE CR1 -4 1573 1457 2199 132 6 3 chr4 116397259 116397570 -67891092 - AluSx SINE Alu 0 312 1 385 271 50 111 chr4 116397570 116397738 -67890924 - L3 LINE CR1 -120 1457 1311 870 160 0 0 chr4 116398005 116398136 -67890526 + FLAM_C SINE Alu 1 131 -2 2813 164 45 24 chr4 116398436 116399050 -67889612 + MER41B LTR ERV1 1 474 -12 476 322 141 20 chr4 116399191 116399495 -67889167 - L3 LINE CR1 -300 1277 937 23 0 0 0 chr4 116399786 116399809 -67888853 + AT_rich Low_complexity Low_complexity 1 23 0 2034 137 7 7 chr4 116399898 116400204 -67888458 - AluSq SINE Alu -7 306 1 450 267 137 53 chr4 116400296 116400727 -67887935 - MLT1L LTR MaLR -7 608 142 409 217 230 33 chr4 116400780 116400932 -67887730 + MER102b DNA MER1_type 150 331 -10 1929 218 98 16 chr4 116401043 116401542 -67887120 - MLT1F LTR MaLR 0 542 3 2371 101 3 0 chr4 116404313 116404621 -67884041 - AluSp SINE Alu -4 309 1 301 287 46 0 chr4 116404935 116405022 -67883640 - MIR SINE MIR -128 134 44 2317 114 10 0 chr4 116405058 116405366 -67883296 - AluSq SINE Alu -2 311 1 254 328 8 57 chr4 116405770 116405892 -67882770 + MIR SINE MIR 5 120 -142 2295 98 3 3 chr4 116405964 116406261 -67882401 - AluSq SINE Alu -16 297 1 207 0 0 0 chr4 116406294 116406317 -67882345 + (TA)n Simple_repeat Simple_repeat 1 23 0 515 208 10 10 chr4 116406387 116406483 -67882179 + AluJ/FLAM SINE Alu 1 96 -216 845 169 6 44 chr4 116406609 116406792 -67881870 + FRAM SINE Alu 1 171 -5 457 270 13 69 chr4 116406862 116407021 -67881641 + MIR SINE MIR 5 154 -108 720 207 7 0 chr4 116407040 116407175 -67881487 - AluJo SINE Alu -176 136 1 195 326 0 0 chr4 116407211 116407257 -67881405 + L2 LINE L2 3217 3262 -10 1814 174 0 19 chr4 116407735 116408052 -67880610 + AluJo SINE Alu 1 311 -1 845 135 0 0 chr4 116408579 116408705 -67879957 + AluSg/x SINE Alu 182 307 -3 2243 114 3 3 chr4 116409118 116409425 -67879237 + AluSx SINE Alu 1 307 -5 2356 96 3 0 chr4 116410006 116410309 -67878353 + AluSp SINE Alu 1 304 -9 2244 96 31 0 chr4 116410828 116411120 -67877542 + AluSg SINE Alu 1 301 -9 2057 127 0 32 chr4 116411385 116411693 -67876969 - AluSx SINE Alu -14 298 1 22 0 0 0 chr4 116412296 116412318 -67876344 + AT_rich Low_complexity Low_complexity 1 22 0 32 57 0 0 chr4 116412584 116412637 -67876025 + AT_rich Low_complexity Low_complexity 1 53 0 880 99 0 0 chr4 116412673 116412784 -67875878 + AluSp/q SINE Alu 188 298 -15 562 279 61 19 chr4 116413899 116414258 -67874404 + L1MC4 LINE L1 7028 7401 -641 2206 105 29 73 chr4 116414278 116414590 -67874072 + THE1B LTR MaLR 1 295 -69 2848 10 0 0 chr4 116414590 116414901 -67873761 - AluYa5 SINE Alu 0 311 1 2206 105 29 73 chr4 116414901 116414969 -67873693 + THE1B LTR MaLR 295 364 0 2325 184 71 167 chr4 116415149 116415331 -67873331 + L1MC4 LINE L1 6482 6680 -1362 1574 178 21 68 chr4 116415331 116415701 -67872961 + AluJo SINE Alu 1 312 0 2325 184 71 167 chr4 116415701 116416483 -67872179 + L1MC4 LINE L1 6680 7240 -802 2733 105 3 0 chr4 116416483 116416846 -67871816 - THE1B LTR MaLR 0 364 1 2325 184 71 167 chr4 116416846 116417446 -67871216 + L1MC4 LINE L1 7240 7896 -146 253 304 57 13 chr4 116417504 116417662 -67871000 + L1 LINE L1 2869 3033 -3113 2229 136 32 45 chr4 116417671 116417966 -67870696 + L1MA8 LINE L1 5831 6120 -171 2255 96 3 0 chr4 116417966 116418274 -67870388 + AluSx SINE Alu 2 310 0 2229 136 32 45 chr4 116418274 116418442 -67870220 + L1MA8 LINE L1 6120 6289 -2 820 237 67 76 chr4 116418475 116418910 -67869752 + L1MC4 LINE L1 7390 7820 -222 314 235 76 45 chr4 116419206 116419338 -67869324 - L1ME4a LINE L1 -22 6099 5964 306 245 186 27 chr4 116419389 116419577 -67869085 - L1ME4a LINE L1 -195 5926 5709 25 0 0 0 chr4 116419912 116419937 -67868725 + AT_rich Low_complexity Low_complexity 1 25 0 1286 188 143 8 chr4 116420108 116420283 -67868379 - AluJo SINE Alu -10 302 152 225 0 0 0 chr4 116420283 116420308 -67868354 + (TG)n Simple_repeat Simple_repeat 2 26 0 1286 188 143 8 chr4 116420308 116420398 -67868264 - AluJo SINE Alu -160 152 1 246 288 30 0 chr4 116420423 116420489 -67868173 + L1MC/D LINE L1 5509 5576 -2232 543 219 0 42 chr4 116422115 116422234 -67866428 - L2 LINE L2 -10 3303 3190 2388 159 34 0 chr4 116422317 116422725 -67865937 + MSTB LTR MaLR 1 422 -4 1561 161 54 18 chr4 116422844 116422942 -67865720 + AluJo SINE Alu 23 116 -251 201 39 0 0 chr4 116422942 116422968 -67865694 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2176 115 3 0 chr4 116422971 116423267 -67865395 + AluSp SINE Alu 1 297 -16 1561 161 54 18 chr4 116423267 116423499 -67865163 + AluJo SINE Alu 117 367 0 2072 189 55 75 chr4 116423595 116423643 -67865019 + L1 LINE L1 3115 3162 -2984 1648 148 21 52 chr4 116423643 116423971 -67864691 + AluJo SINE Alu 1 319 0 2072 189 55 75 chr4 116423971 116424806 -67863856 + L1 LINE L1 3162 4039 -2107 438 244 131 38 chr4 116425189 116425279 -67863383 + MER96 DNA MER1_type? 1 81 -94 2112 123 14 0 chr4 116425279 116425571 -67863091 - AluSx SINE Alu -16 296 1 2016 123 55 35 chr4 116425572 116425938 -67862724 - THE1C LTR MaLR -1 374 2 438 244 131 38 chr4 116425938 116426005 -67862657 + MER96 DNA MER1_type? 80 175 0 293 289 32 26 chr4 116426269 116426425 -67862237 + MLT1J LTR MaLR 327 483 -28 2402 90 3 6 chr4 116427652 116427963 -67860699 - AluSx SINE Alu -2 310 1 629 224 134 27 chr4 116427972 116428195 -67860467 - L2 LINE L2 -17 3296 3050 1050 183 0 43 chr4 116428334 116428520 -67860142 + AluJo SINE Alu 122 299 -13 1848 160 0 38 chr4 116428521 116428840 -67859822 + AluJo SINE Alu 1 307 -5 1324 154 0 106 chr4 116429537 116429572 -67859090 + AluJb SINE Alu 1 38 -274 4090 78 271 0 chr4 116429572 116430222 -67858440 + LTR12 LTR ERV1 1 826 0 1324 154 0 106 chr4 116430222 116430479 -67858183 + AluJb SINE Alu 38 262 -50 289 253 22 0 chr4 116431133 116431224 -67857438 + LTR33A LTR ERVL 427 519 -4 673 220 5 95 chr4 116431771 116431971 -67856691 + FAM SINE Alu 1 48 -1 410 253 137 1 chr4 116432780 116432918 -67855744 - MIR SINE MIR -86 122 17 460 272 222 0 chr4 116433095 116433275 -67855387 + MIR SINE MIR 15 234 -28 455 296 52 0 chr4 116433759 116433874 -67854788 - L2 LINE L2 -3 3269 3149 275 245 117 21 chr4 116434976 116435070 -67853592 + MER34B LTR ERV1 5 107 -458 598 272 67 40 chr4 116435153 116435218 -67853444 + MER34B LTR ERV1 260 322 -243 2367 145 60 0 chr4 116435218 116435598 -67853064 + MER57A LTR ERV1 1 403 0 598 272 67 40 chr4 116435598 116435830 -67852832 + MER34B LTR ERV1 322 565 0 1820 145 6 108 chr4 116436140 116436472 -67852190 - AluJb SINE Alu -4 298 1 28 48 0 0 chr4 116436758 116436800 -67851862 + AT_rich Low_complexity Low_complexity 1 42 0 2419 62 0 16 chr4 116436831 116437138 -67851524 - SVA Other Other 0 1386 1085 2067 198 53 35 chr4 116438055 116438544 -67850118 + MLT1D LTR MaLR 4 501 -4 180 242 30 76 chr4 116438593 116438659 -67850003 - L2 LINE L2 -26 3287 3225 502 208 56 24 chr4 116438757 116438882 -67849780 + LTR40a LTR ERVL 1 129 -390 1809 154 0 0 chr4 116439002 116439293 -67849369 + AluSx SINE Alu 25 315 0 2464 106 29 35 chr4 116439389 116439766 -67848896 - THE1C LTR MaLR 0 375 1 304 247 24 0 chr4 116440420 116440505 -67848157 - L1ME4a LINE L1 -67 6054 5968 43805 52 2 1 chr4 116440699 116446834 -67841828 + L1PA4 LINE L1 11 6152 -3 576 290 94 96 chr4 116447878 116449417 -67839245 - L1M3 LINE L1 -628 5552 4037 2337 95 0 0 chr4 116449417 116449721 -67838941 + AluSx SINE Alu 1 304 -8 576 290 94 96 chr4 116449721 116450248 -67838414 - L1M3 LINE L1 -2143 4037 3510 1524 186 19 19 chr4 116450627 116450934 -67837728 - AluJb SINE Alu -5 307 1 369 43 0 0 chr4 116451269 116451316 -67837346 + (GA)n Simple_repeat Simple_repeat 1 47 0 1044 177 30 15 chr4 116451318 116451516 -67837146 - MLT2B3 LTR ERVL -353 201 1 547 289 79 51 chr4 116451518 116451864 -67836798 - L1M3 LINE L1 -2889 3257 2922 2213 123 0 0 chr4 116451864 116452166 -67836496 - AluSq SINE Alu -11 302 1 547 289 79 51 chr4 116452166 116452482 -67836180 - L1M3 LINE L1 -3224 2922 2496 393 233 17 9 chr4 116452577 116452693 -67835969 + Charlie1 DNA MER1_type 2192 2308 -453 1347 124 5 0 chr4 116452699 116452885 -67835777 + AluSx SINE Alu 1 187 -125 1416 165 31 116 chr4 116453047 116453537 -67835125 + Charlie1 DNA MER1_type 2314 2761 0 190 289 0 60 chr4 116453538 116453621 -67835041 - MIR SINE MIR -109 153 76 35 41 0 0 chr4 116453652 116453701 -67834961 + AT_rich Low_complexity Low_complexity 1 49 0 210 353 67 33 chr4 116454491 116454641 -67834021 - MIR SINE MIR -83 179 25 275 274 143 0 chr4 116454908 116454992 -67833670 - L2 LINE L2 -8 3264 3169 339 222 0 0 chr4 116455361 116455424 -67833238 - MLT1I LTR MaLR -3 406 344 602 207 59 7 chr4 116455510 116455645 -67833017 - MLT1I LTR MaLR -233 176 35 227 273 0 0 chr4 116456375 116456430 -67832232 + (CA)n Simple_repeat Simple_repeat 2 56 0 234 256 158 0 chr4 116457751 116457833 -67830829 + L1ME4a LINE L1 6004 6098 -23 183 129 0 0 chr4 116457875 116457906 -67830756 + (TTG)n Simple_repeat Simple_repeat 2 32 0 645 248 54 96 chr4 116458370 116458416 -67830246 + MLT1H LTR MaLR 62 108 -434 2298 82 0 28 chr4 116458416 116458733 -67829929 + AluY SINE Alu 1 308 -3 645 248 54 96 chr4 116458733 116459016 -67829646 + MLT1H LTR MaLR 108 375 -167 455 343 49 29 chr4 116459152 116459458 -67829204 - L2 LINE L2 -439 2875 2564 2205 131 0 0 chr4 116459504 116459810 -67828852 + AluSc SINE Alu 1 306 -3 701 260 31 53 chr4 116460753 116460980 -67827682 - MIR SINE MIR -13 249 28 477 227 125 0 chr4 116461277 116461405 -67827257 - LTR33 LTR ERVL 0 521 378 250 355 0 11 chr4 116461500 116461593 -67827069 - LTR33 LTR ERVL -364 157 66 2072 105 0 21 chr4 116461597 116461908 -67826754 - AluSg SINE Alu 0 305 1 523 278 128 32 chr4 116462148 116462429 -67826233 + L2 LINE L2 2995 3302 -11 3578 174 28 60 chr4 116462929 116463064 -67825598 + LTR39 LTR ERV1 59 197 -586 955 57 0 16 chr4 116463064 116463188 -67825474 + L1PA4 LINE L1 6034 6155 0 3578 174 28 60 chr4 116463188 116463485 -67825177 + LTR39 LTR ERV1 197 459 -324 2075 144 0 0 chr4 116463485 116463784 -67824878 - AluSx SINE Alu -13 299 1 3578 174 28 60 chr4 116463784 116464098 -67824564 + LTR39 LTR ERV1 459 782 -1 505 252 61 20 chr4 116464105 116464252 -67824410 + MIR SINE MIR 46 198 -64 311 232 56 84 chr4 116465416 116465558 -67823104 + MIR SINE MIR 47 184 -78 334 255 92 35 chr4 116466241 116466382 -67822280 - L2 LINE L2 -1 3271 3123 194 255 132 132 chr4 116466619 116466765 -67821897 - MIR SINE MIR -6 256 111 2445 106 103 23 chr4 116466765 116466829 -67821833 - MSTA LTR MaLR 0 428 371 2197 114 27 0 chr4 116466829 116466949 -67821713 + AluSg SINE Alu 1 116 -194 207 0 0 0 chr4 116466949 116466972 -67821690 + (CA)n Simple_repeat Simple_repeat 2 24 0 2197 114 27 0 chr4 116466972 116467150 -67821512 + AluSg SINE Alu 116 307 -3 2445 106 103 23 chr4 116467150 116467481 -67821181 - MSTA LTR MaLR -57 371 1 194 255 132 132 chr4 116467481 116467585 -67821077 - MIR SINE MIR -150 112 6 2416 93 0 3 chr4 116468317 116468627 -67820035 + AluSx SINE Alu 1 309 -3 2116 126 0 3 chr4 116469243 116469537 -67819125 + AluSq SINE Alu 1 293 -20 1386 225 61 40 chr4 116469538 116469983 -67818679 + LTR37B LTR ERV1 15 468 0 204 241 43 106 chr4 116470448 116470589 -67818073 - MIR3 SINE MIR -32 176 45 486 139 0 0 chr4 116470692 116470778 -67817884 + (TCCC)n Simple_repeat Simple_repeat 4 89 0 653 181 181 7 chr4 116470782 116470937 -67817725 - L2 LINE L2 -14 3299 3118 306 0 0 0 chr4 116471512 116471546 -67817116 + (CA)n Simple_repeat Simple_repeat 2 35 0 605 240 34 29 chr4 116472115 116472290 -67816372 + MER5B DNA MER1_type 3 178 0 333 297 0 0 chr4 116472515 116472606 -67816056 - MIR SINE MIR -108 154 64 1006 171 0 6 chr4 116473842 116474012 -67814650 - FRAM SINE Alu -10 166 1 719 231 0 0 chr4 116474160 116474294 -67814368 - MLT1E3 LTR MaLR -9 615 482 985 217 47 63 chr4 116474395 116474695 -67813967 - MLT1E3 LTR MaLR -169 455 161 331 293 71 37 chr4 116474860 116475032 -67813630 + MIR SINE MIR 13 188 -74 422 280 180 28 chr4 116475198 116475409 -67813253 + L1ME LINE L1 5532 5683 -438 202 185 217 43 chr4 116475984 116476076 -67812586 + L2 LINE L2 3203 3310 -3 4234 182 31 62 chr4 116476255 116476695 -67811967 - MER4E LTR ERV1 -10 769 362 2236 104 0 7 chr4 116476695 116476993 -67811669 + AluSg SINE Alu 1 296 -14 4234 182 31 62 chr4 116476993 116477345 -67811317 - MER4E LTR ERV1 -417 362 1 286 308 25 33 chr4 116477587 116477707 -67810955 + MIR SINE MIR 20 138 -124 305 379 39 22 chr4 116478030 116478212 -67810450 + MER5A DNA MER1_type 2 186 -3 603 240 76 35 chr4 116478357 116478528 -67810134 - MLT1K LTR MaLR -16 572 395 4254 99 30 59 chr4 116478629 116479292 -67809370 - LTR9B LTR ERV1 0 644 1 2107 122 7 3 chr4 116480298 116480601 -67808061 - AluSq SINE Alu -9 304 1 2277 107 0 0 chr4 116481888 116482188 -67806474 - AluSq SINE Alu -13 300 1 570 217 25 0 chr4 116682447 116682604 -67606058 + L1MB3 LINE L1 6020 6180 -3 255 303 40 30 chr4 116683494 116683593 -67605069 - L2 LINE L2 -6 3266 3167 279 0 0 0 chr4 116683989 116684020 -67604642 + (TG)n Simple_repeat Simple_repeat 1 31 0 * 348 43 0 0 chr4 116684019 116684065 -67604597 + (GA)n Simple_repeat Simple_repeat 1 46 0 580 222 33 7 chr4 116685971 116686124 -67602538 + L1M4 LINE L1 5668 5824 -350 680 104 10 0 chr4 116686124 116686220 -67602442 + AluS SINE Alu 1 97 -216 2392 63 7 0 chr4 116686613 116686912 -67601750 + AluY SINE Alu 1 301 -10 724 156 81 0 chr4 116688322 116688495 -67600167 + MSTA LTR MaLR 1 187 -241 352 308 99 51 chr4 116688696 116688790 -67599872 - L2 LINE L2 -1009 2305 2217 976 254 114 31 chr4 116688790 116689212 -67599450 - MSTB2 LTR MaLR 0 457 1 352 308 99 51 chr4 116689212 116689471 -67599191 - L2 LINE L2 -1097 2217 1935 585 103 0 11 chr4 116690564 116690651 -67598011 - AluY SINE Alu -224 86 1 24 0 0 0 chr4 116690660 116690684 -67597978 + AT_rich Low_complexity Low_complexity 1 24 0 30 45 0 0 chr4 116691216 116691260 -67597402 + AT_rich Low_complexity Low_complexity 1 44 0 2078 103 3 33 chr4 116691265 116691567 -67597095 - AluSg SINE Alu -15 295 3 3033 12 0 0 chr4 116693670 116694038 -67594624 + SVA Other Other 1045 1412 0 406 207 35 11 chr4 116694052 116694139 -67594523 + MIR SINE MIR 108 196 -66 537 221 10 10 chr4 116694199 116694303 -67594359 + L2 LINE L2 3199 3302 -11 625 194 0 0 chr4 116694515 116694613 -67594049 + FLAM_A SINE Alu 13 110 -32 987 257 55 4 chr4 116695845 116696102 -67592560 + L2 LINE L2 2026 2295 -1019 1103 286 17 14 chr4 116696120 116696476 -67592186 + L1MEc LINE L1 44 400 -5996 385 231 0 51 chr4 116696482 116696599 -67592063 + L1MEc LINE L1 484 594 -5802 545 222 30 0 chr4 116696601 116696736 -67591926 - MER58B DNA MER1_type -5 336 198 1928 148 7 3 chr4 116697065 116697370 -67591292 - AluSx SINE Alu -6 306 1 219 36 0 0 chr4 116698016 116698044 -67590618 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 228 248 23 30 chr4 116698201 116698334 -67590328 - LTR16C LTR ERVL -62 429 298 21 0 0 0 chr4 116700449 116700470 -67588192 + AT_rich Low_complexity Low_complexity 1 21 0 2172 112 0 10 chr4 116700474 116700768 -67587894 - AluSx SINE Alu -21 291 1 2131 121 10 10 chr4 116700868 116701166 -67587496 - AluSx SINE Alu -14 298 1 198 286 186 0 chr4 116701613 116701683 -67586979 + L2 LINE L2 3182 3264 -8 221 353 67 33 chr4 116701950 116702100 -67586562 + MIR SINE MIR 25 179 -83 313 171 85 24 chr4 116702928 116703010 -67585652 + L1M4 LINE L1 2838 2924 -3222 278 270 88 22 chr4 116703013 116703150 -67585512 + L1M4 LINE L1 2982 3127 -3019 1590 278 62 43 chr4 116703195 116704133 -67584529 + L2 LINE L2 2358 3312 -1 2181 121 0 6 chr4 116704372 116704686 -67583976 - AluSx SINE Alu 0 312 1 21 0 0 0 chr4 116704754 116704775 -67583887 + AT_rich Low_complexity Low_complexity 1 21 0 1007 108 16 70 chr4 116704880 116705065 -67583597 - AluY SINE Alu -17 294 120 2024 134 3 16 chr4 116705855 116706162 -67582500 - AluSx SINE Alu -9 303 1 22 0 0 0 chr4 116706216 116706238 -67582424 + AT_rich Low_complexity Low_complexity 1 22 0 2436 64 0 0 chr4 116706238 116706534 -67582128 - AluY SINE Alu -15 296 1 486 49 0 0 chr4 116706549 116706610 -67582052 + (TCCA)n Simple_repeat Simple_repeat 1 61 0 1189 251 80 44 chr4 116707291 116707793 -67580869 - L1ME1 LINE L1 -5 6161 5642 22 0 0 0 chr4 116709548 116709570 -67579092 + AT_rich Low_complexity Low_complexity 1 22 0 10428 124 30 26 chr4 116710080 116711056 -67577606 - Tigger1 DNA MER2_type -7 2411 1441 2461 79 0 0 chr4 116711056 116711359 -67577303 + AluY SINE Alu 1 303 -8 2356 82 0 0 chr4 116711360 116711654 -67577008 + AluY SINE Alu 1 294 -17 10428 124 30 26 chr4 116711654 116712542 -67576120 - Tigger1 DNA MER2_type -976 1442 536 614 265 126 43 chr4 116712883 116713113 -67575549 + MIR SINE MIR 4 252 -10 2224 80 3 0 chr4 116713433 116713719 -67574943 + AluSx SINE Alu 1 287 -25 347 248 9 18 chr4 116713929 116714038 -67574624 + L1MC4 LINE L1 7789 7896 -146 431 217 18 96 chr4 116715687 116715788 -67572874 - MER103 DNA DNA -6 160 75 2610 49 0 0 chr4 116715788 116716094 -67572568 + AluY SINE Alu 1 306 -5 431 217 18 96 chr4 116716094 116716158 -67572504 - MER103 DNA DNA -91 75 8 362 264 47 28 chr4 116716259 116716471 -67572191 + L1MC5 LINE L1 7580 7795 -166 2132 148 0 0 chr4 116717108 116717412 -67571250 - AluSx SINE Alu -8 304 1 608 300 19 38 chr4 116717703 116717913 -67570749 + MIR SINE MIR 9 214 -48 1924 129 11 0 chr4 116717919 116718236 -67570426 - AluSx SINE Alu 0 320 1 2787 142 19 20 chr4 116718355 116718842 -67569820 - LTR45B LTR ERV1 -2 487 2 1579 176 3 20 chr4 116718935 116719230 -67569432 - AluSx SINE Alu -14 298 9 426 135 104 21 chr4 116719408 116719504 -67569158 - L1ME LINE L1 -510 5654 5551 292 277 99 0 chr4 116720594 116720695 -67567967 + MIR SINE MIR 116 226 -36 230 260 0 50 chr4 116721283 116721383 -67567279 + MER87 LTR ERV1 250 344 -197 697 119 0 1 chr4 116723230 116723345 -67565317 - L1PB1 LINE L1 -172 5979 5866 2141 119 0 0 chr4 116723813 116724098 -67564564 + AluSc SINE Alu 1 285 -24 1301 44 0 6 chr4 116725067 116725248 -67563414 + SVA Other Other 714 893 -493 627 261 86 63 chr4 116726031 116726432 -67562230 - L1MC4 LINE L1 0 8042 7624 2168 123 0 3 chr4 116726432 116726733 -67561929 - AluSx SINE Alu -12 300 1 627 261 86 63 chr4 116726733 116726868 -67561794 - L1MC4 LINE L1 -418 7624 7494 2552 169 51 43 chr4 116726980 116727220 -67561442 + L1MB8 LINE L1 5546 5783 -395 2106 122 4 4 chr4 116727220 116727528 -67561134 + AluSx SINE Alu 6 313 0 2552 169 51 43 chr4 116727528 116727912 -67560750 + L1MB8 LINE L1 5783 6176 -2 332 356 67 13 chr4 116727927 116728166 -67560496 - L1MC4 LINE L1 -584 7458 7207 267 305 74 0 chr4 116728240 116728335 -67560327 - MIR SINE MIR -64 144 43 688 239 193 5 chr4 116728652 116728865 -67559797 + MIR SINE MIR 5 257 -5 469 333 24 29 chr4 116729010 116729217 -67559445 + MIR3 SINE MIR 3 208 0 1115 192 58 5 chr4 116729394 116729618 -67559044 + MER8 DNA MER2_type 4 239 0 2451 51 10 0 chr4 116729668 116729962 -67558700 - AluY SINE Alu -14 297 1 180 111 0 0 chr4 116730401 116730428 -67558234 + (TCCCC)n Simple_repeat Simple_repeat 4 30 0 1712 181 18 0 chr4 116730429 116730705 -67557957 - AluJo SINE Alu -31 281 1 275 310 0 0 chr4 116730709 116730780 -67557882 + L2 LINE L2 3227 3297 -16 324 307 20 0 chr4 116730824 116730925 -67557737 - MLT1F1 LTR MaLR -349 218 116 22 0 0 0 chr4 116733806 116733828 -67554834 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr4 116735703 116735727 -67552935 + AT_rich Low_complexity Low_complexity 1 24 0 2097 138 0 0 chr4 116736234 116736531 -67552131 - AluSx SINE Alu -15 297 1 441 194 153 0 chr4 116737428 116737526 -67551136 + MER44D DNA MER2_type 1 383 -226 593 65 0 75 chr4 116737661 116737754 -67550908 + AluSc SINE Alu 213 298 -11 225 0 0 0 chr4 116737754 116737779 -67550883 + (TA)n Simple_repeat Simple_repeat 1 25 0 596 243 0 0 chr4 116737793 116737904 -67550758 + MLT1F1 LTR MaLR 23 133 -434 641 205 39 0 chr4 116737905 116738032 -67550630 + AluJo SINE Alu 3 134 -178 1794 210 115 8 chr4 116738050 116738459 -67550203 + MLT1F1 LTR MaLR 112 567 0 583 255 166 64 chr4 116739147 116739551 -67549111 - MLT1J1 LTR MaLR -1 445 1 224 302 187 29 chr4 116739720 116739859 -67548803 + L2 LINE L2 3111 3271 -1 1659 182 14 0 chr4 116739932 116740212 -67548450 + AluJo SINE Alu 1 284 -28 26 30 0 0 chr4 116740606 116740639 -67548023 + AT_rich Low_complexity Low_complexity 1 33 0 202 209 0 0 chr4 116740974 116741017 -67547645 + A-rich Low_complexity Low_complexity 3 45 0 376 304 49 0 chr4 116741554 116741656 -67547006 + L2 LINE L2 3157 3263 -9 2216 96 3 13 chr4 116742925 116743237 -67545425 + AluSc SINE Alu 1 309 0 241 203 139 0 chr4 116743719 116743798 -67544864 - MIR3 SINE MIR -11 197 108 2174 120 0 0 chr4 116743934 116744226 -67544436 - AluSx SINE Alu -20 292 1 24 53 0 0 chr4 116744344 116744382 -67544280 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr4 116744546 116744572 -67544090 + AT_rich Low_complexity Low_complexity 1 26 0 233 271 106 12 chr4 116745278 116745363 -67543299 - L2 LINE L2 -8 3264 3172 334 222 0 0 chr4 116745736 116745799 -67542863 - MLT1I LTR MaLR -3 406 344 593 207 59 7 chr4 116745885 116746020 -67542642 - MLT1I LTR MaLR -233 176 35 227 273 0 0 chr4 116746750 116746805 -67541857 + (CA)n Simple_repeat Simple_repeat 2 56 0 183 129 0 0 chr4 116748250 116748281 -67540381 + (TTG)n Simple_repeat Simple_repeat 2 32 0 640 246 168 76 chr4 116748745 116748791 -67539871 + MLT1H LTR MaLR 62 102 -440 2277 82 0 28 chr4 116748791 116749108 -67539554 + AluY SINE Alu 1 308 -3 640 246 168 76 chr4 116749108 116749391 -67539271 + MLT1H LTR MaLR 102 375 -167 423 346 49 29 chr4 116749527 116749833 -67538829 - L2 LINE L2 -439 2875 2564 2121 141 0 0 chr4 116749879 116750185 -67538477 + AluSc SINE Alu 1 306 -3 1621 160 69 3 chr4 116751108 116751396 -67537266 + AluSp SINE Alu 1 307 -6 714 195 31 31 chr4 116751553 116751712 -67536950 - FRAM SINE Alu -20 156 1 189 0 0 0 chr4 116751999 116752020 -67536642 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 362 302 245 6 chr4 116752348 116752507 -67536155 + MIR3 SINE MIR 6 202 -6 1749 167 21 30 chr4 116756279 116756614 -67532048 + MER2 DNA MER2_type 1 332 -13 442 191 0 0 chr4 116756983 116757067 -67531595 + LTR37A LTR ERV1 284 367 -59 21 0 0 0 chr4 116757068 116757089 -67531573 + AT_rich Low_complexity Low_complexity 1 21 0 380 285 116 31 chr4 116757181 116757396 -67531266 - MIR SINE MIR -21 241 10 215 220 76 102 chr4 116757453 116757571 -67531091 + MIR3 SINE MIR 69 183 -25 2187 98 3 3 chr4 116758099 116758385 -67530277 - AluSc SINE Alu -23 286 1 417 284 0 0 chr4 116758887 116759035 -67529627 + (TA)n Simple_repeat Simple_repeat 2 149 0 1584 178 16 41 chr4 116759106 116759426 -67529236 - AluJo SINE Alu 0 312 1 195 325 79 9 chr4 116759426 116759540 -67529122 - MIR SINE MIR -94 168 47 1391 211 10 24 chr4 116759571 116759869 -67528793 + AluJb SINE Alu 1 294 -18 613 189 36 36 chr4 116760227 116760423 -67528239 - MER69B DNA AcHobo -4 1222 1027 1757 133 43 46 chr4 116760453 116760647 -67528015 - L1MA8 LINE L1 0 6291 6097 2112 124 0 32 chr4 116760647 116760962 -67527700 - AluSx SINE Alu -7 305 1 1757 133 43 46 chr4 116760962 116761135 -67527527 - L1MA8 LINE L1 -194 6097 5925 1622 166 50 3 chr4 116761313 116761596 -67527066 + AluJo SINE Alu 5 300 -12 988 223 36 5 chr4 116761596 116761816 -67526846 + MER87 LTR ERV1 232 458 -83 2023 122 3 33 chr4 116761839 116762143 -67526519 - AluSq SINE Alu -18 295 1 3441 112 11 63 chr4 116762209 116762828 -67525834 - L1MA8 LINE L1 -363 5928 5342 1402 225 89 20 chr4 116762829 116763233 -67525429 - MER69B DNA AcHobo -248 978 547 409 247 0 0 chr4 116763362 116763459 -67525203 - AluSg/x SINE Alu -6 294 198 1586 143 4 41 chr4 116764436 116764702 -67523960 + AluJb SINE Alu 1 256 -56 21 0 0 0 chr4 116764819 116764840 -67523822 + AT_rich Low_complexity Low_complexity 1 21 0 202 289 0 0 chr4 116765973 116766018 -67522644 + L2 LINE L2 3228 3272 0 341 308 77 77 chr4 116766341 116766510 -67522152 + L2 LINE L2 2993 3161 -111 225 333 49 10 chr4 116767430 116767532 -67521130 + L2 LINE L2 3192 3297 -16 1522 199 36 4 chr4 116767723 116768000 -67520662 - AluJo SINE Alu -24 288 3 2421 71 0 0 chr4 116768417 116768713 -67519949 - AluY SINE Alu -15 296 1 294 194 60 0 chr4 116769972 116770039 -67518623 - MER58B DNA MER1_type 0 341 271 902 227 36 23 chr4 116770191 116770411 -67518251 - MER58A DNA MER1_type 0 224 2 2382 91 0 0 chr4 116770700 116771007 -67517655 + AluSc SINE Alu 1 307 -2 721 268 120 27 chr4 116771902 116772299 -67516363 - L1M4 LINE L1 -396 5788 5429 1889 119 0 0 chr4 116772299 116772559 -67516103 - AluSx SINE Alu -6 306 47 721 268 120 27 chr4 116772559 116772862 -67515800 - L1M4 LINE L1 -755 5429 5023 268 210 0 16 chr4 116772921 116772983 -67515679 + Charlie4 DNA MER1_type 43 103 -1858 276 210 0 16 chr4 116773151 116773213 -67515449 + Charlie4 DNA MER1_type 43 103 -1858 1521 189 26 10 chr4 116774666 116774973 -67513689 - MER58B DNA MER1_type 0 341 30 211 269 0 13 chr4 116775217 116775295 -67513367 + (TATATG)n Simple_repeat Simple_repeat 4 80 0 1655 194 134 9 chr4 116776188 116776637 -67512025 + Charlie4a DNA MER1_type 1 505 -3 235 284 183 18 chr4 116776651 116776820 -67511842 - MIR SINE MIR -20 242 46 506 235 0 0 chr4 116777185 116777283 -67511379 - FLAM_A SINE Alu -32 110 13 471 255 9 9 chr4 116777496 116777602 -67511060 - L2 LINE L2 -11 3302 3197 356 273 30 38 chr4 116777613 116777745 -67510917 - MIR SINE MIR -22 240 110 336 24 0 0 chr4 116777763 116777804 -67510858 + (TA)n Simple_repeat Simple_repeat 2 42 0 813 166 0 12 chr4 116777804 116777967 -67510695 - SVA Other Other -17 1369 1209 1018 179 113 36 chr4 116778610 116778884 -67509778 - L1MA7 LINE L1 0 6291 5997 230 114 0 45 chr4 116779067 116779111 -67509551 + L2 LINE L2 3272 3313 0 30 27 0 0 chr4 116779136 116779173 -67509489 + AT_rich Low_complexity Low_complexity 1 37 0 204 250 0 0 chr4 116779713 116779777 -67508885 + GA-rich Low_complexity Low_complexity 3 66 0 2240 115 0 0 chr4 116780261 116780556 -67508106 + AluSc SINE Alu 1 295 -14 2287 98 0 0 chr4 116780668 116780963 -67507699 + AluSx SINE Alu 1 295 -17 297 240 31 0 chr4 116781584 116781680 -67506982 + T-rich Low_complexity Low_complexity 3 101 0 270 335 144 16 chr4 116781866 116782060 -67506602 - MIR SINE MIR -10 252 34 22 0 0 0 chr4 116782418 116782440 -67506222 + AT_rich Low_complexity Low_complexity 1 22 0 2143 132 3 0 chr4 116782513 116782816 -67505846 + AluSx SINE Alu 1 304 -8 936 148 0 7 chr4 116783205 116783347 -67505315 + AluSg/x SINE Alu 157 297 -15 23 68 0 0 chr4 116784268 116784312 -67504350 + AT_rich Low_complexity Low_complexity 1 44 0 2575 47 3 0 chr4 116785386 116785686 -67502976 - AluY SINE Alu -10 301 1 180 290 65 81 chr4 116786263 116786387 -67502275 - L2 LINE L2 -9 3263 3142 701 260 31 53 chr4 116786957 116787184 -67501478 - MIR SINE MIR -13 249 28 477 227 125 0 chr4 116787481 116787609 -67501053 - LTR33 LTR ERVL 0 521 378 250 355 0 11 chr4 116787704 116787797 -67500865 - LTR33 LTR ERVL -364 157 66 2141 94 0 21 chr4 116787801 116788112 -67500550 - AluSg SINE Alu 0 305 1 523 278 128 32 chr4 116788352 116788633 -67500029 + L2 LINE L2 2995 3302 -11 3529 179 27 62 chr4 116789112 116789268 -67499394 + LTR39 LTR ERV1 40 200 -583 942 65 0 16 chr4 116789268 116789392 -67499270 + L1PA4 LINE L1 6034 6155 0 3529 179 27 62 chr4 116789392 116789690 -67498972 + LTR39 LTR ERV1 200 459 -324 2075 144 0 0 chr4 116789690 116789989 -67498673 - AluSx SINE Alu -13 299 1 3529 179 27 62 chr4 116789989 116790303 -67498359 + LTR39 LTR ERV1 459 782 -1 505 252 61 20 chr4 116790310 116790457 -67498205 + MIR SINE MIR 46 198 -64 311 232 56 84 chr4 116791621 116791763 -67496899 + MIR SINE MIR 47 184 -78 334 255 92 35 chr4 116792446 116792587 -67496075 - L2 LINE L2 -1 3271 3123 194 255 132 132 chr4 116792824 116792970 -67495692 - MIR SINE MIR -6 256 111 2445 106 103 23 chr4 116792970 116793034 -67495628 - MSTA LTR MaLR 0 428 371 2197 114 27 0 chr4 116793034 116793154 -67495508 + AluSg SINE Alu 1 116 -194 207 0 0 0 chr4 116793154 116793177 -67495485 + (CA)n Simple_repeat Simple_repeat 2 24 0 2197 114 27 0 chr4 116793177 116793355 -67495307 + AluSg SINE Alu 116 307 -3 2445 106 103 23 chr4 116793355 116793686 -67494976 - MSTA LTR MaLR -57 371 1 194 255 132 132 chr4 116793686 116793790 -67494872 - MIR SINE MIR -150 112 6 2325 99 0 6 chr4 116794522 116794834 -67493828 + AluSx SINE Alu 1 310 -2 2051 133 0 3 chr4 116795450 116795744 -67492918 + AluSq SINE Alu 1 293 -20 1386 225 61 40 chr4 116795745 116796190 -67492472 + LTR37B LTR ERV1 15 468 0 257 247 36 101 chr4 116796655 116796816 -67491846 - MIR SINE MIR -32 176 25 798 94 0 0 chr4 116796816 116796933 -67491729 + (TCCC)n Simple_repeat Simple_repeat 4 120 0 257 247 36 101 chr4 116796933 116796948 -67491714 - MIR SINE MIR -183 25 11 195 167 0 0 chr4 116796937 116796967 -67491695 - L2 LINE L2 -14 3299 3270 * 288 0 0 0 chr4 116797636 116797668 -67490994 + (CA)n Simple_repeat Simple_repeat 2 33 0 605 240 34 29 chr4 116798237 116798412 -67490250 + MER5B DNA MER1_type 3 178 0 333 297 0 0 chr4 116798637 116798728 -67489934 - MIR SINE MIR -108 154 64 1014 170 0 6 chr4 116799964 116800135 -67488527 - FRAM SINE Alu -9 167 1 1753 221 39 44 chr4 116800283 116800740 -67487922 - MLT1E3 LTR MaLR -9 615 161 331 293 71 37 chr4 116800905 116801077 -67487585 + MIR SINE MIR 13 188 -74 423 282 182 29 chr4 116801245 116801454 -67487208 + L1ME LINE L1 5534 5683 -438 202 185 217 43 chr4 116802029 116802121 -67486541 + L2 LINE L2 3203 3310 -3 4778 97 46 39 chr4 116802300 116802712 -67485950 - MER4E LTR ERV1 -10 769 348 2210 107 0 7 chr4 116802712 116803010 -67485652 + AluSg SINE Alu 1 296 -14 4778 97 46 39 chr4 116803010 116803361 -67485301 - MER4E LTR ERV1 -431 348 1 305 300 25 33 chr4 116803603 116803723 -67484939 + MIR SINE MIR 20 138 -124 305 379 39 22 chr4 116804046 116804228 -67484434 + MER5A DNA MER1_type 2 186 -3 448 283 82 6 chr4 116804373 116804532 -67484130 - MLT1K LTR MaLR -16 572 402 4254 99 30 59 chr4 116804832 116805495 -67483167 - LTR9B LTR ERV1 0 644 1 2107 122 7 3 chr4 116806501 116806804 -67481858 - AluSq SINE Alu -9 304 1 2277 107 0 0 chr4 116808090 116808390 -67480272 - AluSq SINE Alu -13 300 1 24 53 0 0 chr4 116808596 116808634 -67480028 + AT_rich Low_complexity Low_complexity 1 38 0 1479 188 0 11 chr4 116808634 116808900 -67479762 - AluJo SINE Alu -20 292 30 2031 134 0 26 chr4 116809687 116809994 -67478668 - AluSx SINE Alu -13 299 1 519 336 78 23 chr4 116810084 116810301 -67478361 - MIR SINE MIR -14 248 20 1302 165 49 22 chr4 116810451 116810569 -67478093 + AluJb SINE Alu 1 114 -198 189 94 0 0 chr4 116810569 116810601 -67478061 + (CTAA)n Simple_repeat Simple_repeat 1 32 0 1302 165 49 22 chr4 116810601 116810749 -67477913 + AluJb SINE Alu 114 274 -38 480 98 0 98 chr4 116810852 116810944 -67477718 + L1MB5 LINE L1 6086 6168 -6 2139 100 10 7 chr4 116810964 116811273 -67477389 - AluSg SINE Alu 0 310 1 512 257 188 33 chr4 116811980 116812225 -67476437 - L2 LINE L2 0 3313 3031 712 204 25 0 chr4 116812233 116812390 -67476272 + L1MB3 LINE L1 6020 6180 -3 435 313 90 34 chr4 116813976 116814236 -67474426 + L2 LINE L2 1931 2218 -1096 2225 169 115 24 chr4 116814236 116814655 -67474007 + MSTB2 LTR MaLR 1 457 0 435 313 90 34 chr4 116814655 116814749 -67473913 + L2 LINE L2 2218 2305 -1009 200 357 65 8 chr4 116814829 116815027 -67473635 + L2 LINE L2 2715 2973 -340 267 316 65 7 chr4 116815382 116815521 -67473141 + L2 LINE L2 3167 3313 0 287 227 102 0 chr4 116816096 116816184 -67472478 + MER94 DNA DNA 2 98 -36 467 298 111 22 chr4 116816399 116816624 -67472038 - MIR SINE MIR 0 262 18 271 230 43 68 chr4 116816834 116816995 -67471667 - Charlie7 DNA MER1_type -36 2576 2420 * 275 140 35 18 chr4 116816962 116817019 -67471643 - Charlie7 DNA MER1_type -2511 101 44 392 310 17 26 chr4 116817110 116817226 -67471436 - MER5A DNA MER1_type -66 123 9 362 82 0 0 chr4 116817293 116817342 -67471320 + MADE1 DNA Mariner 1 49 -31 344 256 176 23 chr4 116821243 116821419 -67467243 - MARNA DNA Mariner -326 260 58 2662 40 0 0 chr4 116821561 116821861 -67466801 + AluY SINE Alu 1 300 -11 22 0 0 0 chr4 116822745 116822767 -67465895 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 116825190 116825213 -67463449 + AT_rich Low_complexity Low_complexity 1 23 0 342 224 48 102 chr4 116826231 116826378 -67462284 + MIR SINE MIR 103 241 -21 22 80 0 0 chr4 116827250 116827300 -67461362 + AT_rich Low_complexity Low_complexity 1 50 0 824 249 73 9 chr4 116828684 116828917 -67459745 + MIR SINE MIR 15 262 0 484 311 111 57 chr4 116829696 116830275 -67458387 + MLT1L LTR MaLR 5 614 -1 658 214 8 16 chr4 116830957 116831083 -67457579 + FLAM_A SINE Alu 1 125 -8 21 36 0 0 chr4 116831088 116831116 -67457546 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 116831168 116831190 -67457472 + AT_rich Low_complexity Low_complexity 1 22 0 1252 212 77 31 chr4 116832388 116832714 -67455948 - MER2 DNA MER2_type 0 344 4 186 275 29 29 chr4 116834136 116834205 -67454457 - MIR3 SINE MIR -136 72 4 3157 123 0 11 chr4 116834306 116834763 -67453899 + L1PB3 LINE L1 5693 6144 -10 220 186 51 0 chr4 116834828 116834887 -67453775 + (CATATA)n Simple_repeat Simple_repeat 5 66 0 259 303 40 30 chr4 116836498 116836597 -67452065 - L2 LINE L2 -6 3266 3167 291 28 0 0 chr4 116836988 116837024 -67451638 + (TG)n Simple_repeat Simple_repeat 1 36 0 * 381 22 0 0 chr4 116837023 116837069 -67451593 + (GA)n Simple_repeat Simple_repeat 1 46 0 21 0 0 0 chr4 116838227 116838248 -67450414 + AT_rich Low_complexity Low_complexity 1 21 0 359 285 97 16 chr4 116838989 116839175 -67449487 + L1MCc LINE L1 18 218 -6205 1763 176 7 14 chr4 116839293 116839588 -67449074 + AluJo SINE Alu 1 293 -19 185 288 0 76 chr4 116839719 116839785 -67448877 - MIR SINE MIR -67 141 81 1319 126 0 9 chr4 116840001 116840216 -67448446 + LOR1b LTR ERV1 1 213 -248 1859 73 13 0 chr4 116890223 116890455 -67398207 - AluY SINE Alu -76 235 1 291 167 28 93 chr4 116891159 116891267 -67397395 - L1ME1 LINE L1 -284 5882 5782 2165 125 14 3 chr4 116891271 116891568 -67397094 + AluSx SINE Alu 1 300 -12 887 180 41 5 chr4 116891599 116891793 -67396869 - L1MB4 LINE L1 -190 5990 5790 1320 157 0 15 chr4 116891808 116892012 -67396650 + AluJo SINE Alu 71 271 -41 219 36 0 0 chr4 116892018 116892046 -67396616 + (TAA)n Simple_repeat Simple_repeat 1 28 0 286 276 8 98 chr4 116892246 116892283 -67396379 + L2 LINE L2 3201 3240 -73 1892 109 0 4 chr4 116892283 116892549 -67396113 - AluSq SINE Alu -48 265 1 286 276 8 98 chr4 116892549 116892634 -67396028 + L2 LINE L2 3240 3312 -1 1370 210 3 50 chr4 116892705 116892936 -67395726 - L1MD3 LINE L1 0 7995 7786 2262 80 13 10 chr4 116892936 116893236 -67395426 - AluY SINE Alu -10 301 1 1370 210 3 50 chr4 116893236 116893366 -67395296 - L1MD3 LINE L1 -209 7786 7651 534 135 0 0 chr4 116893867 116893963 -67394699 - L1MA5 LINE L1 -5 6295 6200 224 182 0 18 chr4 116894000 116894055 -67394607 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 40 67 0 0 chr4 116895413 116895488 -67393174 + AT_rich Low_complexity Low_complexity 1 75 0 2425 68 0 0 chr4 116895560 116895853 -67392809 + AluY SINE Alu 1 293 -18 439 45 105 0 chr4 116895985 116896118 -67392544 + (TA)n Simple_repeat Simple_repeat 1 147 0 2113 123 31 47 chr4 116897142 116897523 -67391139 + THE1C LTR MaLR 1 375 0 29 47 0 0 chr4 116897609 116897652 -67391010 + AT_rich Low_complexity Low_complexity 1 43 0 921 289 80 20 chr4 116898054 116898704 -67389958 - L1ME3A LINE L1 -223 5930 5242 468 258 213 4 chr4 116898718 116898986 -67389676 - L1ME3A LINE L1 -900 5229 4906 1760 220 37 26 chr4 116898986 116899476 -67389186 - MLT1D LTR MaLR -10 495 1 363 281 155 63 chr4 116899479 116899860 -67388802 - L1ME3A LINE L1 -1221 4908 4493 505 223 16 31 chr4 116899862 116900055 -67388607 - L1ME3A LINE L1 -2163 3966 3777 1221 287 70 13 chr4 116900055 116900714 -67387948 - L2 LINE L2 -4 3309 2616 311 342 8 0 chr4 116900878 116900995 -67387667 + L1M4 LINE L1 3524 3641 -2505 254 289 41 41 chr4 116901001 116901198 -67387464 - MER65A LTR ERV1 0 445 249 283 233 194 0 chr4 116901644 116901747 -67386915 + L2 LINE L2 2321 2443 -871 586 284 101 50 chr4 116902418 116902882 -67385780 - L1ME3A LINE L1 -5285 834 347 834 320 50 38 chr4 116902962 116903381 -67385281 - MLT1E LTR MaLR -148 445 22 574 321 96 48 chr4 116904504 116905041 -67383621 - L2 LINE L2 -1 3271 2716 204 257 86 14 chr4 116905132 116905202 -67383460 - L2 LINE L2 0 3313 3239 2267 101 7 3 chr4 116905699 116906005 -67382657 - AluSq SINE Alu -6 307 1 5540 100 27 2 chr4 116906140 116907001 -67381661 - L1PA14 LINE L1 0 6161 5280 894 213 0 29 chr4 116907077 116907251 -67381411 + FAM SINE Alu 4 172 -3 197 132 26 0 chr4 116907274 116907312 -67381350 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 297 75 0 0 chr4 116907472 116907512 -67381150 + (CA)n Simple_repeat Simple_repeat 1 40 0 208 311 66 66 chr4 116908397 116908503 -67380159 - L2 LINE L2 -6 3266 3161 740 173 101 54 chr4 116908513 116908761 -67379901 - AluJb SINE Alu -9 303 1 377 333 151 28 chr4 116908770 116909224 -67379438 - L2 LINE L2 -112 3201 2648 281 326 22 0 chr4 116909222 116909314 -67379348 + MIR SINE MIR 82 175 -87 * 1036 225 116 10 chr4 116909318 116909611 -67379051 - MLT1C LTR MaLR 0 467 144 283 348 54 0 chr4 116910561 116910673 -67377989 + MER5B DNA MER1_type 1 118 -60 340 277 128 21 chr4 116911349 116911464 -67377198 - L1ME4a LINE L1 -4 6117 6016 192 40 0 0 chr4 116911464 116911489 -67377173 + (TA)n Simple_repeat Simple_repeat 1 25 0 340 277 128 21 chr4 116911489 116911561 -67377101 - L1ME4a LINE L1 -105 6016 5910 350 331 161 45 chr4 116912021 116912580 -67376082 - L3 LINE CR1 -10 1567 944 439 298 36 12 chr4 116912592 116912760 -67375902 + LTR33 LTR ERVL 2 173 -348 368 218 105 38 chr4 116912843 116912882 -67375780 + LTR33 LTR ERVL 378 413 -108 2093 153 60 24 chr4 116912882 116912898 -67375764 - MSTB1 LTR MaLR 0 432 418 348 24 0 0 chr4 116912898 116912939 -67375723 + (TG)n Simple_repeat Simple_repeat 2 42 0 2093 153 60 24 chr4 116912939 116913189 -67375473 - MSTB1 LTR MaLR -14 418 143 2260 102 0 3 chr4 116913189 116913484 -67375178 + AluSq SINE Alu 5 298 -15 2093 153 60 24 chr4 116913484 116913633 -67375029 - MSTB1 LTR MaLR -289 143 1 368 218 105 38 chr4 116913633 116913726 -67374936 + LTR33 LTR ERVL 413 519 -2 384 288 57 64 chr4 116913743 116913813 -67374849 - L3 LINE CR1 -655 922 853 2062 103 7 10 chr4 116913813 116914127 -67374535 - AluSg SINE Alu 0 310 1 384 288 57 64 chr4 116914127 116914320 -67374342 - L3 LINE CR1 -724 853 661 404 304 163 18 chr4 116914328 116914555 -67374107 + MIR SINE MIR 2 261 -1 366 271 252 25 chr4 116914908 116914980 -67373682 - L1M4 LINE L1 -2929 3217 3163 2146 136 0 0 chr4 116914980 116915281 -67373381 - AluSx SINE Alu -11 301 1 366 271 252 25 chr4 116915281 116915412 -67373250 - L1M4 LINE L1 -2983 3163 3063 1456 195 17 40 chr4 116915412 116915709 -67372953 - AluJo SINE Alu -5 307 18 366 271 252 25 chr4 116915709 116915760 -67372902 - L1M4 LINE L1 -3083 3063 3025 2183 130 7 0 chr4 116915760 116916061 -67372601 - AluSx SINE Alu -9 303 1 366 271 252 25 chr4 116916061 116916169 -67372493 - L1M4 LINE L1 -3121 3025 2770 322 247 14 14 chr4 116917324 116917397 -67371265 - L3 LINE CR1 -947 630 558 2275 110 3 7 chr4 116917723 116918068 -67370594 + AluSg SINE Alu 1 344 0 483 63 0 0 chr4 116918072 116918135 -67370527 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 434 279 177 53 chr4 116918709 116919289 -67369373 - L2 LINE L2 -144 3169 2469 868 181 29 20 chr4 116919362 116919392 -67369270 + L1MC/D LINE L1 5144 5172 -1008 2262 113 3 0 chr4 116919392 116919693 -67368969 + AluSx SINE Alu 1 302 -10 868 181 29 20 chr4 116919693 116919961 -67368701 + L1MC/D LINE L1 5172 5437 -743 1392 206 7 18 chr4 116919973 116920259 -67368403 - MER54A LTR ERVL -1 900 618 848 200 31 10 chr4 116920265 116920460 -67368202 + L1MC/D LINE L1 5594 5792 -450 679 187 30 0 chr4 116920464 116920598 -67368064 - MER54A LTR ERVL -276 625 488 1345 152 16 94 chr4 116920764 116921073 -67367589 + AluJb SINE Alu 14 298 -14 3933 153 39 11 chr4 116921074 116921827 -67366835 + L1MD1 LINE L1 5469 6242 0 195 125 0 0 chr4 116921862 116921902 -67366760 + (TCTA)n Simple_repeat Simple_repeat 3 42 0 28 61 0 0 chr4 116924036 116924085 -67364577 + AT_rich Low_complexity Low_complexity 1 49 0 2356 101 3 13 chr4 116924679 116924995 -67363667 - AluSq SINE Alu 0 313 1 23 33 0 0 chr4 116925111 116925141 -67363521 + AT_rich Low_complexity Low_complexity 1 30 0 1827 177 0 25 chr4 116925288 116925604 -67363058 + AluJo SINE Alu 1 308 -4 578 160 7 28 chr4 116925620 116925764 -67362898 + GA-rich Low_complexity Low_complexity 2 142 0 298 145 81 32 chr4 116926623 116926747 -67361915 + (TATAA)n Simple_repeat Simple_repeat 1 130 0 2441 94 0 0 chr4 116927165 116927474 -67361188 + AluSq SINE Alu 1 309 -4 186 283 22 0 chr4 116927807 116927853 -67360809 - L2 LINE L2 -5 3267 3221 2272 147 53 26 chr4 116928108 116928523 -67360139 - MSTB LTR MaLR 0 426 1 660 193 50 110 chr4 116928592 116928810 -67359852 - MER3 DNA MER1_type -4 205 1 1010 205 39 109 chr4 116929180 116929565 -67359097 - MLT1A2 LTR MaLR 0 374 17 389 195 24 0 chr4 116929566 116929648 -67359014 - MSTA LTR MaLR -344 84 1 2125 107 20 0 chr4 116929844 116930144 -67358518 - AluSq SINE Alu -7 306 1 378 169 15 0 chr4 116930147 116930212 -67358450 + Tigger5 DNA MER2_type 2256 2321 -2 352 299 84 48 chr4 116930606 116931115 -67357547 - LTR33A LTR ERVL 0 523 23 281 263 25 68 chr4 116931161 116931279 -67357383 + L2 LINE L2 3184 3296 -17 605 226 55 24 chr4 116932170 116932334 -67356328 - MIR SINE MIR -73 189 21 1321 152 9 4 chr4 116934414 116934644 -67354018 - MER46A DNA MER2_type 0 236 6 315 203 54 14 chr4 116934707 116934781 -67353881 + Tigger5 DNA MER2_type 1 77 -2246 435 203 0 0 chr4 116934783 116934862 -67353800 - Tigger5 DNA MER2_type -4 2319 2241 381 143 0 0 chr4 116934885 116934941 -67353721 + Tigger5 DNA MER2_type 2263 2318 -5 198 0 0 0 chr4 116935056 116935078 -67353584 + (TG)n Simple_repeat Simple_repeat 1 22 0 2115 92 0 0 chr4 116935344 116935617 -67353045 - AluSc SINE Alu -36 273 1 2244 101 13 3 chr4 116936278 116936584 -67352078 - AluSc SINE Alu 0 309 1 247 254 0 0 chr4 116936607 116936662 -67352000 + MIR SINE MIR 174 228 -34 522 68 0 0 chr4 116936679 116936753 -67351909 - Alu SINE Alu 0 311 238 1941 111 47 4 chr4 116936910 116937189 -67351473 - AluSx SINE Alu -15 297 7 224 235 0 98 chr4 116938345 116938447 -67350215 - L2 LINE L2 -522 2792 2701 2216 86 3 13 chr4 116941407 116941708 -67346954 + AluSx SINE Alu 2 299 -13 272 226 16 0 chr4 116943450 116943512 -67345150 - Charlie8 DNA MER1_type -2159 258 196 1959 139 17 0 chr4 116943656 116943958 -67344704 - AluSq SINE Alu -6 307 1 27 0 0 0 chr4 116944646 116944673 -67343989 + AT_rich Low_complexity Low_complexity 1 27 0 206 230 338 0 chr4 116944950 116945024 -67343638 + L2 LINE L2 3197 3295 -18 820 115 62 0 chr4 116946117 116946247 -67342415 - L1PA16 LINE L1 -6 6160 6023 228 67 0 0 chr4 116946247 116946277 -67342385 + (T)n Simple_repeat Simple_repeat 1 30 0 1440 116 14 9 chr4 116946277 116946493 -67342169 - Tigger1 DNA MER2_type -2086 332 116 2752 95 73 2 chr4 116946498 116946920 -67341742 - L1PA16 LINE L1 -136 6030 5579 596 194 0 54 chr4 116946934 116947063 -67341599 + FLAM_A SINE Alu 21 142 0 2162 81 3 7 chr4 116947091 116947387 -67341275 + AluSx SINE Alu 1 295 -17 220 259 122 38 chr4 116947526 116947657 -67341005 + L3 LINE CR1 1147 1288 -289 1461 147 63 0 chr4 116947657 116947909 -67340753 + AluJb SINE Alu 35 302 -10 196 286 157 34 chr4 116948064 116948211 -67340451 - L3 LINE CR1 -623 954 790 332 259 151 56 chr4 116948594 116948811 -67339851 - MIR SINE MIR 0 262 1 190 347 0 0 chr4 116948846 116948895 -67339767 - L3 LINE CR1 -82 1495 1447 34 24 0 0 chr4 116949097 116949138 -67339524 + AT_rich Low_complexity Low_complexity 1 41 0 521 337 165 35 chr4 116949177 116950455 -67338207 + L2 LINE L2 1801 3266 -6 282 282 114 23 chr4 116950461 116950534 -67338128 - L3 LINE CR1 -145 1432 1367 2165 79 17 3 chr4 116950534 116950824 -67337838 - AluSx SINE Alu -18 294 1 282 282 114 23 chr4 116950824 116950881 -67337781 - L3 LINE CR1 -210 1367 1290 568 280 161 19 chr4 116950941 116951202 -67337460 - L3 LINE CR1 -483 1094 797 471 259 141 24 chr4 116951359 116951529 -67337133 + MIR SINE MIR 73 262 0 376 254 246 46 chr4 116951527 116951807 -67336855 - L3 LINE CR1 -910 667 332 * 749 170 131 93 chr4 116953401 116953713 -67334949 + MER33 DNA MER1_type 1 324 0 255 315 213 8 chr4 116955247 116955501 -67333161 - L2 LINE L2 -1106 2208 1903 236 224 0 0 chr4 116955574 116955623 -67333039 + L2 LINE L2 3263 3311 -2 340 333 36 18 chr4 116956090 116956258 -67332404 + MIR3 SINE MIR 32 202 -6 1595 161 49 66 chr4 116957996 116958189 -67330473 - MER2 DNA MER2_type -1 344 158 951 121 0 0 chr4 116958189 116958321 -67330341 - FLAM_C SINE Alu 0 133 2 1595 161 49 66 chr4 116958321 116958474 -67330188 - MER2 DNA MER2_type -187 158 4 413 94 0 0 chr4 116958743 116958796 -67329866 - AluJ/FLAM SINE Alu -233 79 27 670 168 0 0 chr4 116958798 116958899 -67329763 + FLAM_C SINE Alu 3 103 -40 941 223 24 0 chr4 116958920 116959001 -67329661 + L1M2c LINE L1 1956 2034 -4755 2083 107 3 23 chr4 116959001 116959311 -67329351 + AluSg SINE Alu 1 304 -6 941 223 24 0 chr4 116959311 116959759 -67328903 + L1M2c LINE L1 2034 2563 -4226 406 160 13 8 chr4 116959766 116960004 -67328658 + AluSq SINE Alu 5 320 0 214 180 11 79 chr4 116962759 116962848 -67325814 + (CCCTG)n Simple_repeat Simple_repeat 3 85 0 2071 116 0 0 chr4 116963082 116963384 -67325278 - AluSg SINE Alu -8 302 1 2534 138 64 19 chr4 116968477 116968897 -67319765 - MER1A DNA MER1_type -90 439 1 379 189 0 135 chr4 116969168 116969316 -67319346 - LTR41 LTR ERVL -6 767 640 1414 188 49 10 chr4 116969319 116969607 -67319055 + AluJb SINE Alu 1 299 -13 313 235 39 39 chr4 116969735 116969837 -67318825 + L1ME LINE L1 5483 5584 -537 456 218 9 27 chr4 116969849 116969959 -67318703 - FLAM_C SINE Alu -25 118 11 1540 180 0 13 chr4 116970197 116970497 -67318165 - AluJo SINE Alu -16 296 1 367 235 39 49 chr4 116970608 116970710 -67317952 + MER8 DNA MER2_type 3 103 -136 956 197 0 6 chr4 116970710 116970893 -67317769 + AluJb SINE Alu 117 298 -14 1302 198 8 4 chr4 116971490 116971758 -67316904 + AluJo SINE Alu 40 308 -4 21 82 0 0 chr4 116971891 116971940 -67316722 + AT_rich Low_complexity Low_complexity 1 49 0 28 48 0 0 chr4 116971980 116972022 -67316640 + AT_rich Low_complexity Low_complexity 1 42 0 1993 119 0 7 chr4 116972044 116972338 -67316324 - AluSx SINE Alu -16 296 5 1299 215 38 7 chr4 116972496 116972784 -67315878 - AluJo SINE Alu -4 298 2 582 224 0 0 chr4 116972809 116972925 -67315737 - FLAM_C SINE Alu -19 124 9 1190 230 90 73 chr4 116973031 116973672 -67314990 + L2 LINE L2 2458 3100 -213 1622 175 23 13 chr4 116973673 116973847 -67314815 - AluJo SINE Alu 0 312 132 2090 99 0 14 chr4 116973847 116974195 -67314467 - AluSq SINE Alu 0 313 1 1622 175 23 13 chr4 116974195 116974329 -67314333 - AluJo SINE Alu -180 132 1 1585 181 22 70 chr4 116974332 116974691 -67313971 - MLT1D LTR MaLR -2 503 162 644 228 0 7 chr4 116974691 116974827 -67313835 + FLAM_C SINE Alu 2 136 -7 716 208 0 0 chr4 116974832 116974952 -67313710 + FLAM_A SINE Alu 1 120 -13 1025 181 3 115 chr4 116974952 116975239 -67313423 + AluJb SINE Alu 45 299 -13 330 268 0 0 chr4 116975239 116975310 -67313352 + MER21B LTR ERV1 16 86 -777 2622 242 47 37 chr4 116975336 116975745 -67312917 + MER21B LTR ERV1 19 423 -440 1451 189 3 49 chr4 116975745 116976052 -67312610 - AluJb SINE Alu -18 294 2 2622 242 47 37 chr4 116976052 116976122 -67312540 + MER21B LTR ERV1 423 491 -372 1386 197 38 3 chr4 116976122 116976412 -67312250 + AluJo SINE Alu 1 300 -12 2622 242 47 37 chr4 116976412 116976657 -67312005 + MER21B LTR ERV1 491 751 -112 310 351 36 0 chr4 116976820 116976931 -67311731 + MIR SINE MIR 73 187 -75 204 250 96 10 chr4 116977206 116977310 -67311352 + L2 LINE L2 2949 3061 -211 518 139 58 0 chr4 116977625 116977732 -67310930 - AluJb SINE Alu 0 305 194 677 214 0 0 chr4 116977773 116977890 -67310772 + FLAM_C SINE Alu 9 125 -18 3043 118 9 2 chr4 116977903 116978335 -67310327 - MER1A DNA MER1_type -39 490 56 1825 140 0 3 chr4 116978701 116978986 -67309676 + AluJb SINE Alu 11 294 -18 25 51 0 0 chr4 116978987 116979026 -67309636 + AT_rich Low_complexity Low_complexity 1 39 0 2177 98 3 0 chr4 116979026 116979322 -67309340 + AluSp SINE Alu 1 297 -16 1551 192 0 13 chr4 116979408 116979715 -67308947 + AluJb SINE Alu 1 303 -9 226 306 48 61 chr4 116980076 116980305 -67308357 + L2 LINE L2 2836 3061 -211 224 269 129 11 chr4 116980332 116980425 -67308237 + L2 LINE L2 3183 3286 -27 372 195 25 132 chr4 116980489 116980648 -67308014 + MLT1D LTR MaLR 72 213 -292 1310 231 0 14 chr4 116980649 116980943 -67307719 + AluJo SINE Alu 5 294 -18 1390 161 124 25 chr4 116981196 116981470 -67307192 + AluJo SINE Alu 1 301 -1 554 187 0 133 chr4 116981494 116981582 -67307080 - AluJo SINE Alu -159 153 55 1746 146 22 4 chr4 116981582 116981856 -67306806 + AluSx SINE Alu 1 279 -33 279 104 0 0 chr4 116981856 116981904 -67306758 + (CAA)n Simple_repeat Simple_repeat 1 48 0 554 187 0 133 chr4 116981904 116981964 -67306698 - AluJo SINE Alu -255 57 24 491 164 8 102 chr4 116982023 116982054 -67306608 + L1M4 LINE L1 5473 5505 -661 1519 188 10 10 chr4 116982054 116982346 -67306316 + AluJb SINE Alu 1 292 -20 491 164 8 102 chr4 116982346 116982434 -67306228 + L1M4 LINE L1 5505 5589 -577 670 184 0 0 chr4 116982470 116982579 -67306083 - FLAM_A SINE Alu -30 112 4 2777 192 40 37 chr4 116982579 116983199 -67305463 + L1MB8 LINE L1 5552 6173 -5 1505 189 20 20 chr4 116983220 116983522 -67305140 + AluJo SINE Alu 1 302 -10 2002 143 0 3 chr4 116983824 116984132 -67304530 + AluSq SINE Alu 1 307 -6 332 245 11 11 chr4 116984343 116984437 -67304225 - LTR37A LTR ERV1 -93 333 240 1116 212 8 4 chr4 116984594 116984835 -67303827 - AluJo SINE Alu -26 286 45 22 0 0 0 chr4 116984878 116984900 -67303762 + AT_rich Low_complexity Low_complexity 1 22 0 684 218 0 0 chr4 116984900 116985033 -67303629 - FLAM_C SINE Alu 0 133 1 1437 261 80 32 chr4 116985132 116985741 -67302921 + L2 LINE L2 2458 3097 -216 1431 202 11 14 chr4 116985741 116985900 -67302762 - AluJb SINE Alu -17 295 136 2030 108 34 0 chr4 116985900 116986195 -67302467 - AluSg1 SINE Alu -4 305 1 1431 202 11 14 chr4 116986195 116986322 -67302340 - AluJb SINE Alu -176 136 10 1492 202 14 56 chr4 116986343 116986700 -67301962 - MLT1D LTR MaLR -2 503 162 1507 202 0 7 chr4 116986703 116987000 -67301662 + AluJo SINE Alu 5 299 -13 307 307 0 0 chr4 116987000 116987075 -67301587 + MER21B LTR ERV1 16 90 -773 2567 216 87 43 chr4 116987097 116987259 -67301403 + MER21B LTR ERV1 19 172 -691 1995 150 0 3 chr4 116987259 116987553 -67301109 - AluSq SINE Alu -20 293 1 2567 216 87 43 chr4 116987553 116987863 -67300799 + MER21B LTR ERV1 172 467 -396 1740 167 0 16 chr4 116987863 116988168 -67300494 + AluJo SINE Alu 1 300 -12 2567 216 87 43 chr4 116988168 116988452 -67300210 + MER21B LTR ERV1 467 805 -58 7532 112 19 15 chr4 116988469 116989536 -67299126 + MER11C LTR ERVK 1 1071 0 255 278 124 65 chr4 116989591 116989760 -67298902 + MIR SINE MIR 9 187 -75 207 203 47 31 chr4 116989990 116990054 -67298608 + (CACCC)n Simple_repeat Simple_repeat 1 65 0 189 0 0 0 chr4 116990291 116990312 -67298350 + (A)n Simple_repeat Simple_repeat 1 21 0 732 192 0 0 chr4 116990437 116990557 -67298105 - AluJb SINE Alu -8 304 185 1344 222 7 26 chr4 116990559 116990861 -67297801 - AluJo SINE Alu -16 296 1 385 250 9 27 chr4 116990898 116991010 -67297652 + L1MC3 LINE L1 5724 5833 -1952 32 26 0 0 chr4 116991161 116991200 -67297462 + AT_rich Low_complexity Low_complexity 1 39 0 1451 195 30 30 chr4 116991270 116991567 -67297095 + AluJo SINE Alu 3 299 -13 2242 95 7 0 chr4 116991628 116991922 -67296740 + AluSg SINE Alu 1 296 -14 365 282 24 86 chr4 116991947 116992084 -67296578 + L1ME LINE L1 5445 5563 -558 573 154 65 65 chr4 116992084 116992207 -67296455 - FLAM_C SINE Alu -7 126 4 365 282 24 86 chr4 116992207 116992331 -67296331 + L1ME LINE L1 5563 5693 -428 633 165 29 0 chr4 116992372 116992475 -67296187 - U6 snRNA snRNA 0 107 2 504 194 9 65 chr4 116992695 116992803 -67295859 + MER8 DNA MER2_type 4 105 -134 1025 152 0 0 chr4 116992814 116992959 -67295703 + AluJb SINE Alu 130 274 -38 1626 201 0 0 chr4 116993380 116993664 -67294998 + AluJb SINE Alu 1 284 -28 234 0 0 0 chr4 116993665 116993691 -67294971 + (CA)n Simple_repeat Simple_repeat 2 27 0 * 297 0 0 0 chr4 116993690 116993723 -67294939 + (TC)n Simple_repeat Simple_repeat 1 33 0 1901 71 0 0 chr4 116994037 116994261 -67294401 + AluSq SINE Alu 3 226 -87 900 199 42 121 chr4 116995981 116996313 -67292349 + L1MC4 LINE L1 6718 7069 -938 241 222 121 20 chr4 116996390 116996489 -67292173 + L1MC5 LINE L1 7799 7907 -54 337 197 0 0 chr4 116996797 116996863 -67291799 - MSTD LTR MaLR -1 395 330 650 195 11 17 chr4 116996863 116997037 -67291625 + GA-rich Low_complexity Low_complexity 4 176 0 1645 179 88 16 chr4 116997075 116997393 -67291269 - MSTD LTR MaLR -55 341 1 2147 118 3 3 chr4 116998528 116998832 -67289830 + AluSx SINE Alu 1 304 -8 1510 170 0 4 chr4 116998932 116999203 -67289459 + AluSx SINE Alu 34 303 -9 1762 168 14 0 chr4 116999381 116999673 -67288989 - AluSx SINE Alu -15 297 2 2011 106 14 3 chr4 117000462 117000764 -67287898 - AluSq SINE Alu 0 305 1 301 118 0 0 chr4 117001610 117001661 -67287001 - AluSp/q SINE Alu -2 301 251 189 239 30 15 chr4 117001931 117001998 -67286664 - MIR SINE MIR -56 152 85 244 266 16 0 chr4 117002347 117002411 -67286251 - MIR SINE MIR -177 85 21 2163 117 0 13 chr4 117003903 117004039 -67284623 + AluSx SINE Alu 1 137 -175 2295 108 3 0 chr4 117004039 117004344 -67284318 + AluSp SINE Alu 1 306 -7 2163 117 0 13 chr4 117004344 117004505 -67284157 + AluSx SINE Alu 137 294 -18 1518 102 9 5 chr4 117004549 117004764 -67283898 + AluSg/x SINE Alu 94 309 -1 703 151 0 0 chr4 117004927 117005033 -67283629 + AluSg/x SINE Alu 204 309 -1 281 293 30 66 chr4 117005428 117005520 -67283142 + L2 LINE L2 3118 3212 -101 2222 117 0 0 chr4 117005520 117005818 -67282844 + AluSq SINE Alu 1 298 -15 281 293 30 66 chr4 117005818 117005923 -67282739 + L2 LINE L2 3212 3308 -5 2000 126 0 0 chr4 117006361 117006631 -67282031 + AluSx SINE Alu 1 270 -42 353 246 109 36 chr4 117006755 117006865 -67281797 + L2 LINE L2 3195 3312 -1 21 36 0 0 chr4 117007252 117007280 -67281382 + AT_rich Low_complexity Low_complexity 1 28 0 1577 207 39 32 chr4 117007407 117008172 -67280490 - L1M4c LINE L1 -4071 2313 1452 999 133 39 0 chr4 117008172 117008352 -67280310 - L1MA5 LINE L1 0 6300 6114 1903 170 13 0 chr4 117009524 117009824 -67278838 - AluJb SINE Alu -8 304 1 469 379 46 29 chr4 117009987 117010538 -67278124 - L2 LINE L2 -2 3270 2710 491 266 0 9 chr4 117010549 117010662 -67278000 - L2 LINE L2 -5 3308 3197 2116 134 7 3 chr4 117011036 117011342 -67277320 + AluSx SINE Alu 1 307 -5 22 0 0 0 chr4 117011746 117011768 -67276894 + AT_rich Low_complexity Low_complexity 1 22 0 337 206 0 0 chr4 117011781 117011849 -67276813 + MER116 DNA Mariner 1 68 -12 1495 146 0 16 chr4 117012852 117013098 -67275564 - AluSg/x SINE Alu 0 312 71 896 64 0 0 chr4 117013098 117013207 -67275455 - AluSq/x SINE Alu -203 109 1 1382 169 42 46 chr4 117013295 117013602 -67275060 - L1MB8 LINE L1 -2 6176 5871 1555 198 49 85 chr4 117013713 117014612 -67274050 - L1MB8 LINE L1 -2 6176 5112 518 188 111 17 chr4 117015725 117015842 -67272820 - FLAM_A SINE Alu -5 128 1 1793 120 6 111 chr4 117015846 117016180 -67272482 - AluSx SINE Alu -4 308 10 711 158 0 0 chr4 117016300 117016401 -67272261 + AluSg/x SINE Alu 179 279 -33 2217 114 3 29 chr4 117016685 117017001 -67271661 + AluSc SINE Alu 1 308 -1 186 43 0 0 chr4 117017112 117017135 -67271527 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 722 151 0 63 chr4 117017137 117017263 -67271399 - FLAM_C SINE Alu -15 118 1 766 181 9 0 chr4 117017280 117017396 -67271266 + FAM SINE Alu 40 156 -29 231 36 0 0 chr4 117017396 117017424 -67271238 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 23 33 0 0 chr4 117017435 117017465 -67271197 + AT_rich Low_complexity Low_complexity 1 30 0 589 317 124 39 chr4 117018709 117019028 -67269634 - L2 LINE L2 -276 3037 2747 2486 82 0 0 chr4 117019028 117019333 -67269329 + AluSg SINE Alu 1 305 -5 589 317 124 39 chr4 117019333 117019938 -67268724 - L2 LINE L2 -566 2747 1979 289 325 26 8 chr4 117020284 117020401 -67268261 - L1ME LINE L1 -519 5602 5484 22 35 0 0 chr4 117021001 117021030 -67267632 + AT_rich Low_complexity Low_complexity 1 29 0 218 213 21 0 chr4 117021178 117021225 -67267437 + (TATG)n Simple_repeat Simple_repeat 3 50 0 23 0 0 0 chr4 117022005 117022028 -67266634 + AT_rich Low_complexity Low_complexity 1 23 0 1816 160 10 19 chr4 117022032 117022344 -67266318 - AluJo SINE Alu -3 309 1 234 321 19 57 chr4 117022415 117022521 -67266141 + MIR SINE MIR 31 132 -76 846 135 7 7 chr4 117022969 117023110 -67265552 - AluSg/x SINE Alu -3 309 169 1893 138 29 0 chr4 117023353 117023648 -67265014 + AluSx SINE Alu 2 304 0 387 0 0 0 chr4 117023797 117023840 -67264822 + (TTA)n Simple_repeat Simple_repeat 3 45 0 1304 41 0 0 chr4 117023840 117023986 -67264676 - L1PA7 LINE L1 -18 6136 5991 333 276 115 26 chr4 117023995 117024151 -67264511 + L2 LINE L2 3121 3290 -23 2180 191 87 38 chr4 117025425 117025976 -67262686 + MER21B LTR ERV1 275 852 -11 1986 137 3 0 chr4 117026064 117026349 -67262313 + AluJb SINE Alu 11 296 -16 6780 129 25 3 chr4 117026809 117027907 -67260755 - L1MC1 LINE L1 -24 6309 5187 2343 114 0 0 chr4 117028243 117028549 -67260113 + AluSx SINE Alu 1 306 -6 1130 138 6 0 chr4 117028549 117028716 -67259946 + AluSp SINE Alu 134 301 -12 1318 126 0 29 chr4 117028754 117028983 -67259679 + AluSq SINE Alu 96 313 0 219 36 0 0 chr4 117029706 117029734 -67258928 + (CTAG)n Simple_repeat Simple_repeat 1 28 0 959 232 0 5 chr4 117029734 117029941 -67258721 - AluJo SINE Alu -31 281 76 1993 103 11 0 chr4 117029943 117030216 -67258446 - AluSx SINE Alu -35 277 2 648 179 7 90 chr4 117030252 117030397 -67258265 + FLAM_C SINE Alu 1 133 0 966 86 22 29 chr4 117030404 117030543 -67258119 - AluJo SINE Alu -152 160 23 495 194 0 31 chr4 117030604 117030702 -67257960 - FRAM SINE Alu -19 157 63 242 133 167 0 chr4 117030728 117030788 -67257874 - AluJb SINE Alu -185 117 48 524 69 0 0 chr4 117031091 117031163 -67257499 + AluSc SINE Alu 236 307 -2 248 95 71 0 chr4 117031358 117031400 -67257262 - MLT2F LTR ERVL 0 663 619 324 241 8 68 chr4 117031408 117031541 -67257121 + (CAGAGA)n Simple_repeat Simple_repeat 4 128 0 1862 212 119 60 chr4 117031550 117031581 -67257081 - MLT2F LTR ERVL -40 623 595 2670 150 25 11 chr4 117031581 117032020 -67256642 + MER65A LTR ERV1 1 445 0 1862 212 119 60 chr4 117032020 117032125 -67256537 - MLT2F LTR ERVL -68 595 498 2634 124 57 5 chr4 117032125 117032528 -67256134 - MSTA LTR MaLR 0 428 5 1862 212 119 60 chr4 117032528 117032568 -67256094 - MLT2F LTR ERVL -165 498 462 2167 103 10 0 chr4 117032568 117032860 -67255802 + AluSg SINE Alu 1 295 -15 1862 212 119 60 chr4 117032860 117033267 -67255395 - MLT2F LTR ERVL -201 462 3 315 0 0 0 chr4 117034126 117034161 -67254501 + (CA)n Simple_repeat Simple_repeat 2 36 0 934 166 55 22 chr4 117034233 117034414 -67254248 + AluJ SINE Alu 1 187 -125 241 54 0 54 chr4 117034430 117034467 -67254195 - Alu SINE Alu -267 53 19 320 306 41 16 chr4 117034476 117034597 -67254065 + MLT1H LTR MaLR 23 146 -403 234 56 0 56 chr4 117034593 117034629 -67254033 - Alu SINE Alu -107 195 162 * 814 142 0 0 chr4 117034633 117034746 -67253916 + AluJ SINE Alu 181 293 -19 767 269 36 49 chr4 117035749 117036057 -67252605 + MLT1H LTR MaLR 2 305 -244 313 266 86 16 chr4 117036078 117036206 -67252456 + MLT1H LTR MaLR 410 546 -3 256 318 45 0 chr4 117036207 117036295 -67252367 - L2 LINE L2 -19 3253 3162 284 211 0 0 chr4 117036651 117036708 -67251954 - MER5A DNA MER1_type -72 117 61 2203 126 126 23 chr4 117036977 117037145 -67251517 + MSTB1 LTR MaLR 4 153 -279 2213 113 7 7 chr4 117037145 117037445 -67251217 + AluSc SINE Alu 1 300 -9 2203 126 126 23 chr4 117037445 117037665 -67250997 + MSTB1 LTR MaLR 153 432 0 2180 133 0 0 chr4 117038652 117038954 -67249708 - AluSx SINE Alu -10 302 1 486 88 0 0 chr4 117039539 117039607 -67249055 + (TA)n Simple_repeat Simple_repeat 2 69 0 1938 134 43 0 chr4 117039609 117039886 -67248776 - AluSx SINE Alu -23 289 1 477 282 27 0 chr4 117040180 117040329 -67248333 + L1ME1 LINE L1 5959 6111 -55 1820 148 10 17 chr4 117040329 117040620 -67248042 + AluSx SINE Alu 1 289 -23 300 181 0 28 chr4 117040631 117040703 -67247959 + L1MB8 LINE L1 6107 6176 -2 2327 74 3 3 chr4 117040714 117041010 -67247652 + AluSx SINE Alu 1 296 -16 269 326 11 0 chr4 117041417 117041509 -67247153 - L2 LINE L2 0 3313 3221 397 271 30 23 chr4 117041534 117041667 -67246995 - MLT1I LTR MaLR -49 360 227 465 212 30 8 chr4 117041669 117041801 -67246861 + L1ME2 LINE L1 5764 5898 -266 1525 292 43 23 chr4 117042006 117042453 -67246209 - L2 LINE L2 -157 3156 2719 2031 106 3 14 chr4 117042453 117042790 -67245872 + AluSc SINE Alu 1 334 0 1777 157 3 10 chr4 117042798 117043091 -67245571 + AluJb SINE Alu 1 291 -21 1525 292 43 23 chr4 117043091 117043327 -67245335 - L2 LINE L2 -600 2713 2444 3939 160 43 2 chr4 117043377 117044176 -67244486 + L1MA9 LINE L1 5329 6159 -153 840 168 119 89 chr4 117044195 117044659 -67244003 - MER4C LTR ERV1 0 694 184 2155 124 51 23 chr4 117044659 117045013 -67243649 + THE1B LTR MaLR 1 364 0 840 168 119 89 chr4 117045013 117045203 -67243459 - MER4C LTR ERV1 -510 184 1 608 180 8 0 chr4 117045213 117045341 -67243321 + L1MA9 LINE L1 6179 6307 -5 330 302 16 40 chr4 117045377 117045503 -67243159 - L2 LINE L2 -885 2429 2307 209 313 83 19 chr4 117045564 117045739 -67242923 + MIR SINE MIR 31 212 -50 1816 155 0 23 chr4 117046960 117047264 -67241398 + AluJb SINE Alu 1 297 -15 2413 92 3 13 chr4 117047702 117048018 -67240644 - AluSq SINE Alu 0 313 1 23 33 0 0 chr4 117048135 117048165 -67240497 + AT_rich Low_complexity Low_complexity 1 30 0 1828 177 0 25 chr4 117048311 117048787 -67239875 + AluJo SINE Alu 1 468 0 296 200 13 0 chr4 117048939 117049014 -67239648 + GA-rich Low_complexity Low_complexity 3 78 0 434 259 196 0 chr4 117049104 117049262 -67239400 - MIR SINE MIR -7 255 67 290 293 32 80 chr4 117049294 117049482 -67239180 + L2 LINE L2 2825 3003 -269 2242 117 3 0 chr4 117050554 117050862 -67237800 - AluSx SINE Alu -3 309 1 1858 165 3 13 chr4 117052040 117052343 -67236319 - AluJo SINE Alu -12 300 1 1792 141 53 0 chr4 117052371 117052654 -67236008 - AluSq SINE Alu -15 298 1 455 289 146 14 chr4 117054118 117054318 -67234344 + MIR SINE MIR 37 254 -8 209 246 15 0 chr4 117054765 117054830 -67233832 + CT-rich Low_complexity Low_complexity 2 67 0 853 281 110 51 chr4 117054836 117055364 -67233298 - L2 LINE L2 -22 3291 2714 2050 85 25 18 chr4 117055364 117055666 -67232996 - AluSx SINE Alu 0 304 1 853 281 110 51 chr4 117055666 117055727 -67232935 - L2 LINE L2 -599 2714 2658 334 271 42 42 chr4 117056198 117056316 -67232346 + MIR SINE MIR 127 244 -18 673 233 91 32 chr4 117056353 117056572 -67232090 + MIR SINE MIR 2 233 -29 22 0 0 0 chr4 117056608 117056630 -67232032 + AT_rich Low_complexity Low_complexity 1 22 0 206 418 67 0 chr4 117056718 117056852 -67231810 - L2 LINE L2 -8 3264 3122 2093 129 3 3 chr4 117057431 117057740 -67230922 - AluSx SINE Alu -3 309 1 28 29 0 0 chr4 117059341 117059376 -67229286 + AT_rich Low_complexity Low_complexity 1 35 0 201 279 103 0 chr4 117059657 117059725 -67228937 + L2 LINE L2 3239 3313 0 1863 150 67 29 chr4 117061471 117061845 -67226817 + MLT1B LTR MaLR 1 388 -2 22 0 0 0 chr4 117062625 117062647 -67226015 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 117062658 117062680 -67225982 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr4 117064866 117064889 -67223773 + (CA)n Simple_repeat Simple_repeat 2 24 0 1384 146 65 65 chr4 117064889 117065048 -67223614 + MER2 DNA MER2_type 3 161 -184 706 191 0 8 chr4 117065048 117065174 -67223488 - FLAM_C SINE Alu -8 125 1 1384 146 65 65 chr4 117065174 117065336 -67223326 + MER2 DNA MER2_type 160 324 -21 596 78 0 0 chr4 117066157 117066234 -67222428 - Alu SINE Alu -233 77 1 441 229 121 51 chr4 117066666 117066823 -67221839 - MIR SINE MIR -48 214 47 1651 171 4 4 chr4 117067403 117067654 -67221008 + AluJo SINE Alu 1 251 -61 1083 68 0 8 chr4 117067754 117067886 -67220776 - AluSp SINE Alu -182 131 1 26 30 0 0 chr4 117067892 117067925 -67220737 + AT_rich Low_complexity Low_complexity 1 33 0 258 317 130 6 chr4 117068072 117068233 -67220429 + MIR SINE MIR 5 185 -77 2096 125 0 3 chr4 117068303 117068600 -67220062 + AluY SINE Alu 1 296 -15 26 82 0 0 chr4 117071364 117071425 -67217237 + AT_rich Low_complexity Low_complexity 1 61 0 2250 94 3 0 chr4 117071496 117071782 -67216880 - AluSp SINE Alu -11 302 16 515 196 155 14 chr4 117074988 117075136 -67213526 - MER63A DNA MER1_type -40 170 2 23 0 0 0 chr4 117079581 117079604 -67209058 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr4 117079740 117079774 -67208888 + AT_rich Low_complexity Low_complexity 1 34 0 540 214 179 35 chr4 117080369 117080570 -67208092 - MIR SINE MIR -29 233 4 798 165 127 101 chr4 117080938 117081099 -67207563 + MER69 DNA AcHobo 2129 2284 -242 3093 72 38 2 chr4 117081099 117081517 -67207145 + L1PA11 LINE L1 5737 6169 -5 798 165 127 101 chr4 117081517 117081742 -67206920 + MER69 DNA AcHobo 2284 2525 -1 3175 185 37 59 chr4 117082222 117083813 -67204849 + L1PB4 LINE L1 4716 6326 -8 940 196 21 22 chr4 117084309 117084546 -67204116 + MLT2B1 LTR ERVL 12 273 -141 202 246 62 31 chr4 117084750 117084815 -67203847 - MIR SINE MIR -156 106 40 292 253 273 20 chr4 117085270 117085420 -67203242 - MIR3 SINE MIR -3 205 18 288 0 0 0 chr4 117085565 117085597 -67203065 + (CA)n Simple_repeat Simple_repeat 2 33 0 216 154 51 0 chr4 117085661 117085700 -67202962 + GA-rich Low_complexity Low_complexity 2 42 0 989 183 6 0 chr4 117086262 117086431 -67202231 - AluJb SINE Alu -8 304 135 1989 88 59 4 chr4 117087560 117087833 -67200829 - AluSp SINE Alu -25 288 1 278 265 17 77 chr4 117088225 117088342 -67200320 - L2 LINE L2 -10 3303 3194 2411 76 3 0 chr4 117088889 117089219 -67199443 - L1P4 LINE L1 -382 5786 5456 1169 93 0 6 chr4 117089221 117089382 -67199280 + L1PA10 LINE L1 5998 6157 -11 243 325 50 67 chr4 117089439 117089559 -67199103 - MIR SINE MIR -73 135 18 21 36 0 0 chr4 117089591 117089619 -67199043 + AT_rich Low_complexity Low_complexity 1 28 0 210 167 0 0 chr4 117089733 117089769 -67198893 + T-rich Low_complexity Low_complexity 1 36 0 227 211 0 19 chr4 117089782 117089834 -67198828 - AluJ/monomer SINE Alu -249 51 1 529 263 57 26 chr4 117089885 117090054 -67198608 + L2 LINE L2 3112 3289 -24 2382 74 0 3 chr4 117090054 117090351 -67198311 - AluY SINE Alu -15 296 1 529 263 57 26 chr4 117090351 117090375 -67198287 + L2 LINE L2 3289 3311 -2 1939 169 8 21 chr4 117090603 117090721 -67197941 - L1PB4 LINE L1 0 6156 6038 2725 201 25 9 chr4 117090721 117091269 -67197393 + MER41D LTR ERV1 1 557 0 1939 169 8 21 chr4 117091269 117091523 -67197139 - L1PB4 LINE L1 -118 6038 5789 253 172 0 81 chr4 117091573 117091660 -67197002 - L1PB4 LINE L1 -389 5767 5688 556 330 26 44 chr4 117092319 117092661 -67196001 - MLT1I LTR MaLR -2 407 72 385 268 70 13 chr4 117092802 117092959 -67195703 - MLT1H LTR MaLR -2 547 382 1036 211 146 43 chr4 117092993 117093112 -67195550 - MLT1D LTR MaLR 0 505 400 2591 125 65 0 chr4 117093112 117093511 -67195151 + MSTC LTR MaLR 1 425 -3 1036 211 146 43 chr4 117093511 117093789 -67194873 - MLT1D LTR MaLR -105 400 67 3693 147 50 32 chr4 117093789 117094549 -67194113 - LTR1 LTR ERV1 0 785 12 307 147 0 88 chr4 117094565 117094633 -67194029 - MLT1D LTR MaLR -564 62 1 1172 225 46 0 chr4 117094695 117094957 -67193705 - MLT1H LTR MaLR -264 285 12 1557 160 76 53 chr4 117095107 117095464 -67193198 - MLT2D LTR ERVL -49 365 1 1707 255 37 26 chr4 117095509 117096088 -67192574 + L2 LINE L2 1632 2185 -1129 948 196 5 16 chr4 117096091 117096275 -67192387 + MER5A DNA MER1_type 7 188 -1 223 281 244 0 chr4 117096275 117096355 -67192307 + L2 LINE L2 2178 2277 -1037 26 50 0 0 chr4 117097354 117097394 -67191268 + AT_rich Low_complexity Low_complexity 1 40 0 205 378 145 20 chr4 117097830 117098126 -67190536 + L2 LINE L2 2338 2670 -644 3218 134 37 22 chr4 117098823 117099379 -67189283 - L1MB3 LINE L1 -2 6181 5614 2066 111 7 36 chr4 117099379 117099686 -67188976 - AluSg SINE Alu -12 298 1 3218 134 37 22 chr4 117099686 117099725 -67188937 - L1MB3 LINE L1 -569 5614 5577 222 241 0 17 chr4 117099876 117099934 -67188728 + L2 LINE L2 3199 3255 -17 198 118 0 0 chr4 117099934 117099968 -67188694 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 252 253 69 23 chr4 117100236 117100323 -67188339 + Charlie8 DNA MER1_type 1 91 -2326 250 83 0 0 chr4 117100492 117100528 -67188134 + L2 LINE L2 3015 3050 -222 194 333 81 36 chr4 117100630 117100741 -67187921 + L2 LINE L2 3197 3312 -1 618 326 63 13 chr4 117100943 117101182 -67187480 + MIR SINE MIR 6 256 -6 26 0 0 0 chr4 117102866 117102892 -67185770 + AT_rich Low_complexity Low_complexity 1 26 0 306 0 0 0 chr4 117107995 117108029 -67180633 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 36498 78 14 9 chr4 117108029 117114140 -67174522 - L1PA6 LINE L1 -11 6143 11 763 257 64 57 chr4 117114154 117114450 -67174212 + L2 LINE L2 3012 3309 -4 821 161 0 0 chr4 117114824 117114948 -67173714 + AluSq/x SINE Alu 1 124 -188 21 0 0 0 chr4 117115106 117115127 -67173535 + AT_rich Low_complexity Low_complexity 1 21 0 23 78 0 0 chr4 117116173 117116224 -67172438 + AT_rich Low_complexity Low_complexity 1 51 0 315 356 74 35 chr4 117116231 117116433 -67172229 - L2 LINE L2 -37 3235 3026 201 351 109 6 chr4 117116904 117117069 -67171593 - MIR SINE MIR -69 193 12 1575 205 20 0 chr4 117118434 117118737 -67169925 + AluJb SINE Alu 1 309 -3 1373 193 33 33 chr4 117118747 117119022 -67169640 - AluJo SINE Alu -37 275 1 191 314 105 12 chr4 117119264 117119350 -67169312 - MIR3 SINE MIR -111 97 4 194 290 170 0 chr4 117120033 117120133 -67168529 + MIR SINE MIR 54 170 -92 1901 238 94 14 chr4 117120335 117120961 -67167701 - MER69 DNA AcHobo -550 676 1 371 326 163 33 chr4 117120977 117121339 -67167323 + L2 LINE L2 2865 3273 -40 1514 183 22 48 chr4 117121381 117121867 -67166795 - AluJo SINE Alu 0 312 1 5880 112 14 3 chr4 117121953 117123136 -67165526 + L1PA15 LINE L1 4960 6162 -3 6000 95 8 2 chr4 117123227 117124047 -67164615 + LTR12 LTR ERV1 2 826 0 1427 209 37 17 chr4 117124100 117124449 -67164213 + MLT1A1 LTR MaLR 10 365 0 391 138 15 0 chr4 117125062 117125127 -67163535 + MLT1B LTR MaLR 1 66 -324 2351 94 0 0 chr4 117125232 117125529 -67163133 + AluSg1 SINE Alu 1 297 -12 1700 144 28 25 chr4 117125671 117125785 -67162877 + MLT1B LTR MaLR 63 175 -215 2460 81 0 0 chr4 117125785 117126093 -67162569 + AluY SINE Alu 1 308 -3 1700 144 28 25 chr4 117126093 117126305 -67162357 + MLT1B LTR MaLR 175 390 0 2359 49 28 0 chr4 117127539 117127825 -67160837 - AluY SINE Alu -17 294 1 2263 201 11 25 chr4 117128595 117129067 -67159595 - LTR40c LTR ERVL 0 465 1 565 373 58 38 chr4 117129520 117129968 -67158694 - L2 LINE L2 0 3272 2816 398 288 113 36 chr4 117130006 117130228 -67158434 - L2 LINE L2 -559 2755 2517 2139 122 0 29 chr4 117130234 117130546 -67158116 - AluSx SINE Alu -9 303 1 195 313 12 0 chr4 117130815 117130895 -67157767 - L2 LINE L2 -1244 2070 1990 3518 50 9 15 chr4 117131005 117131466 -67157196 - L1PA8 LINE L1 -7 6165 5708 1505 213 50 15 chr4 117131714 117131932 -67156730 + MER6 DNA MER2_type 4 240 -625 306 0 0 0 chr4 117131932 117131966 -67156696 + (TG)n Simple_repeat Simple_repeat 1 34 0 1505 213 50 15 chr4 117131966 117132090 -67156572 + MER6 DNA MER2_type 240 358 -507 2292 105 0 7 chr4 117132262 117132568 -67156094 - AluSc SINE Alu -5 304 1 204 351 40 14 chr4 117132740 117132814 -67155848 + L2 LINE L2 3166 3241 -31 574 298 41 6 chr4 117133808 117133979 -67154683 - L2 LINE L2 -865 2449 2273 579 219 146 17 chr4 117134014 117134192 -67154470 + MIR SINE MIR 6 206 -56 9709 73 14 34 chr4 117134200 117135601 -67153061 + SVA Other Other 13 1385 -1 314 302 158 15 chr4 117135671 117135873 -67152789 - L2 LINE L2 -1093 2221 1991 2848 7 0 0 chr4 117135876 117136186 -67152476 + AluYa5 SINE Alu 1 310 -1 22 0 0 0 chr4 117136943 117136965 -67151697 + AT_rich Low_complexity Low_complexity 1 22 0 1989 133 3 20 chr4 117137898 117138199 -67150463 - AluSx SINE Alu -16 296 1 1219 232 5 55 chr4 117138228 117138625 -67150037 + L1ME2 LINE L1 5778 6154 -10 260 246 37 86 chr4 117138711 117138898 -67149764 + L1MC4 LINE L1 7864 8041 -1 23 0 0 0 chr4 117139030 117139053 -67149609 + AT_rich Low_complexity Low_complexity 1 23 0 3887 266 142 27 chr4 117141229 117143098 -67145564 - L2 LINE L2 -6 3266 1125 413 302 13 25 chr4 117143133 117143292 -67145370 - Charlie8 DNA MER1_type -2244 173 17 692 240 40 6 chr4 117143362 117143537 -67145125 - MIR SINE MIR -31 231 51 2510 60 0 3 chr4 117143671 117143969 -67144693 + AluY SINE Alu 1 297 -14 217 289 244 7 chr4 117144655 117144790 -67143872 - L2 LINE L2 -4 3268 3102 594 200 36 29 chr4 117145005 117145145 -67143517 + MIR3 SINE MIR 65 205 -3 2942 151 3 37 chr4 117145397 117145985 -67142677 + L1MB4 LINE L1 5612 6179 -1 860 274 37 20 chr4 117146358 117146603 -67142059 + MIR SINE MIR 13 261 -1 282 269 21 21 chr4 117146614 117146707 -67141955 + L2 LINE L2 3221 3313 0 211 397 0 0 chr4 117146933 117147011 -67141651 - L2 LINE L2 -3 3310 3233 34 24 0 0 chr4 117147172 117147213 -67141449 + AT_rich Low_complexity Low_complexity 1 41 0 247 148 62 86 chr4 117147233 117147314 -67141348 - MER116 DNA Mariner 0 80 2 269 0 0 0 chr4 117147405 117147436 -67141226 - U2 snRNA snRNA -153 35 5 369 62 0 0 chr4 117147575 117147623 -67141039 + (CA)n Simple_repeat Simple_repeat 1 48 0 219 325 56 44 chr4 117147629 117147789 -67140873 - MIR SINE MIR -60 202 41 200 200 0 0 chr4 117148760 117148805 -67139857 + (CA)n Simple_repeat Simple_repeat 1 45 0 691 164 114 7 chr4 117149015 117149155 -67139507 - AluJb SINE Alu 0 312 158 1361 167 53 53 chr4 117149341 117149640 -67139022 - AluJo SINE Alu -13 299 1 1942 154 3 13 chr4 117149709 117150015 -67138647 + AluJo SINE Alu 1 303 -9 214 341 0 12 chr4 117150475 117150557 -67138105 + GA-rich Low_complexity Low_complexity 2 82 0 1828 173 3 0 chr4 117150973 117151268 -67137394 - AluJo SINE Alu -16 296 1 2401 71 3 0 chr4 117151984 117152279 -67136383 - AluY SINE Alu -15 296 1 210 200 22 0 chr4 117152408 117152453 -67136209 + L2 LINE L2 3210 3255 -17 897 238 180 59 chr4 117152668 117153082 -67135580 - L2 LINE L2 0 3313 2779 567 0 0 0 chr4 117153082 117153145 -67135517 + (TG)n Simple_repeat Simple_repeat 2 64 0 897 238 180 59 chr4 117153145 117153339 -67135323 - L2 LINE L2 -534 2779 2610 1743 177 0 26 chr4 117153931 117154236 -67134426 - AluJo SINE Alu -15 297 1 1557 164 94 4 chr4 117155764 117155886 -67132776 + AluJb SINE Alu 1 111 -201 195 42 0 0 chr4 117155886 117155910 -67132752 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1557 164 94 4 chr4 117155910 117156062 -67132600 + AluJb SINE Alu 111 300 -12 22 56 0 0 chr4 117156215 117156251 -67132411 + AT_rich Low_complexity Low_complexity 1 36 0 185 330 32 43 chr4 117156354 117156448 -67132214 - MIR SINE MIR -73 135 43 24 0 0 0 chr4 117157205 117157229 -67131433 + AT_rich Low_complexity Low_complexity 1 24 0 2215 108 0 10 chr4 117157258 117157565 -67131097 + AluY SINE Alu 2 305 -6 2367 96 0 3 chr4 117158188 117158489 -67130173 - AluSg SINE Alu -10 300 1 207 237 68 17 chr4 117158517 117158576 -67130086 - MIR SINE MIR -115 93 32 250 294 22 22 chr4 117158581 117158673 -67129989 + MIR3 SINE MIR 76 167 -41 1895 156 7 10 chr4 117159142 117159437 -67129225 - AluJb SINE Alu -17 295 2 292 271 105 24 chr4 117159586 117159725 -67128937 - MIR SINE MIR -63 145 2 1812 168 7 3 chr4 117160713 117161011 -67127651 - AluJo SINE Alu -13 299 1 415 316 70 6 chr4 117162074 117162232 -67126430 + MIR3 SINE MIR 16 183 -25 203 300 8 161 chr4 117162465 117162732 -67125930 + L3b LINE CR1 1134 1359 -224 762 153 0 0 chr4 117162766 117162884 -67125778 + FLAM_C SINE Alu 1 118 -15 34 0 0 0 chr4 117162926 117162960 -67125702 + AT_rich Low_complexity Low_complexity 1 34 0 422 136 0 68 chr4 117163028 117163131 -67125531 + L1MA8 LINE L1 6190 6285 -6 416 330 83 67 chr4 117163273 117163508 -67125154 - L2 LINE L2 -606 2708 2478 1867 152 7 23 chr4 117163508 117163810 -67124852 - AluSx SINE Alu -11 301 5 416 330 83 67 chr4 117163810 117163997 -67124665 - L2 LINE L2 -836 2478 2275 1357 91 95 0 chr4 117163997 117164207 -67124455 - MER30 DNA MER1_type 0 230 1 416 330 83 67 chr4 117164207 117164262 -67124400 - L2 LINE L2 -1039 2275 2222 1659 98 0 0 chr4 117164410 117164625 -67124037 + AluSq SINE Alu 5 219 -94 636 152 0 0 chr4 117164625 117164737 -67123925 + AluSg/x SINE Alu 186 297 -13 482 285 111 12 chr4 117165071 117165243 -67123419 + MIR SINE MIR 48 236 -26 23 33 0 0 chr4 117165248 117165278 -67123384 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr4 117165728 117165765 -67122897 + AT_rich Low_complexity Low_complexity 1 37 0 291 293 53 30 chr4 117167361 117167494 -67121168 + MIR SINE MIR 84 219 -43 208 147 0 0 chr4 117167696 117167730 -67120932 + (T)n Simple_repeat Simple_repeat 1 34 0 293 335 67 54 chr4 117168003 117168316 -67120346 - L2 LINE L2 -125 3147 2831 2341 81 0 3 chr4 117169206 117169501 -67119161 - AluY SINE Alu -17 294 1 1133 156 8 84 chr4 117169536 117169773 -67118889 + MER20 DNA MER1_type 1 219 0 187 356 143 39 chr4 117169788 117170018 -67118644 + L2 LINE L2 2654 2907 -407 196 348 11 22 chr4 117170197 117170286 -67118376 + L2 LINE L2 3164 3251 -62 1224 244 3 27 chr4 117170323 117170618 -67118044 + AluJo SINE Alu 1 288 -14 22 0 0 0 chr4 117170823 117170845 -67117817 + AT_rich Low_complexity Low_complexity 1 22 0 334 352 9 0 chr4 117170866 117170971 -67117691 + MIR SINE MIR 41 146 -62 346 353 88 42 chr4 117172045 117172501 -67116161 + L1M2 LINE L1 524 1000 -5849 808 189 59 0 chr4 117173488 117173641 -67115021 + FRAM SINE Alu 1 162 -4 2510 43 0 3 chr4 117174075 117174376 -67114286 + AluY SINE Alu 1 300 -11 22 0 0 0 chr4 117175203 117175225 -67113437 + AT_rich Low_complexity Low_complexity 1 22 0 238 211 0 70 chr4 117175479 117175536 -67113126 + MIR SINE MIR 40 92 -170 * 349 330 59 8 chr4 117175534 117175652 -67113010 - L2 LINE L2 -1 3271 3148 1380 213 40 9 chr4 117175652 117175981 -67112681 + MER58B DNA MER1_type 1 339 -2 322 227 125 23 chr4 117176060 117176188 -67112474 - L2 LINE L2 -191 3081 2941 575 331 53 34 chr4 117176321 117176826 -67111836 - L2 LINE L2 -557 2757 2243 705 234 124 25 chr4 117176883 117177084 -67111578 + MIR SINE MIR 27 247 -15 915 285 33 39 chr4 117177377 117177836 -67110826 + LTR16B LTR ERVL 7 462 -2 779 265 25 34 chr4 117177836 117178183 -67110479 - L2 LINE L2 -268 3045 2700 255 213 80 0 chr4 117179097 117179172 -67109490 + MLT1J LTR MaLR 391 471 -40 33 0 0 0 chr4 117179201 117179234 -67109428 + AT_rich Low_complexity Low_complexity 1 33 0 565 257 87 43 chr4 117180170 117180446 -67108216 + L1ME1 LINE L1 4747 5034 -1112 768 202 55 83 chr4 117180487 117180530 -67108132 + L1ME1 LINE L1 5634 5677 -489 2186 112 3 14 chr4 117180530 117180826 -67107836 + AluSx SINE Alu 1 293 -19 768 202 55 83 chr4 117180826 117181000 -67107662 + L1ME1 LINE L1 5677 5842 -324 21 0 0 0 chr4 117181325 117181346 -67107316 + AT_rich Low_complexity Low_complexity 1 21 0 1885 158 3 7 chr4 117181397 117181701 -67106961 - AluJb SINE Alu -9 303 1 1895 177 17 17 chr4 117182701 117183062 -67105600 - MER47B DNA MER2_type 0 418 58 217 372 50 17 chr4 117183151 117183331 -67105331 - L2 LINE L2 -221 3051 2866 323 307 60 44 chr4 117183788 117184039 -67104623 - L2 LINE L2 -1037 2277 2023 2565 168 37 46 chr4 117184304 117184354 -67104308 - Charlie1 DNA MER1_type -12 2749 2700 1803 72 5 0 chr4 117184354 117184576 -67104086 + AluSp SINE Alu 83 305 -8 2565 168 37 46 chr4 117184576 117185173 -67103489 - Charlie1 DNA MER1_type -61 2700 2108 5329 76 9 3 chr4 117185181 117185935 -67102727 + L1PA13 LINE L1 5386 6144 -19 1188 181 65 8 chr4 117185945 117186205 -67102457 - Charlie1 DNA MER1_type -642 2119 1845 188 273 0 30 chr4 117186269 117186335 -67102327 + L2 LINE L2 3209 3272 0 1054 251 121 17 chr4 117188072 117188649 -67100013 - MER114 LTR ERV -11 637 1 180 234 0 0 chr4 117188952 117188999 -67099663 + CT-rich Low_complexity Low_complexity 2 48 0 334 328 23 23 chr4 117189173 117189304 -67099358 + L2 LINE L2 3138 3268 -4 290 25 0 25 chr4 117189572 117189612 -67099050 + (TTTTA)n Simple_repeat Simple_repeat 4 42 0 1499 150 115 0 chr4 117189615 117189875 -67098787 - AluJo SINE Alu -22 290 1 30 32 0 48 chr4 117190092 117190155 -67098507 + AT_rich Low_complexity Low_complexity 1 60 0 28 0 0 0 chr4 117192306 117192334 -67096328 + AT_rich Low_complexity Low_complexity 1 28 0 15363 153 19 26 chr4 117192341 117193320 -67095342 - L1MA2 LINE L1 0 6304 5320 1957 148 0 0 chr4 117193320 117193610 -67095052 - AluJb SINE Alu -22 290 1 2102 136 0 3 chr4 117193619 117193921 -67094741 - AluSc SINE Alu -8 301 1 15363 153 19 26 chr4 117193921 117194238 -67094424 - L1MA2 LINE L1 -992 5312 4994 1854 111 67 0 chr4 117194238 117194388 -67094274 - AluY SINE Alu -23 288 149 221 0 0 33 chr4 117194388 117194418 -67094244 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1854 111 67 0 chr4 117194418 117194537 -67094125 - AluY SINE Alu -162 149 1 15363 153 19 26 chr4 117194537 117195865 -67092797 - L1MA2 LINE L1 -1310 4994 3658 2232 114 0 0 chr4 117195865 117196173 -67092489 - AluSg SINE Alu 0 310 3 15363 153 19 26 chr4 117196173 117196669 -67091993 - L1MA2 LINE L1 -2646 3658 3160 1983 153 17 0 chr4 117196669 117196969 -67091693 - AluSx SINE Alu -3 309 5 15363 153 19 26 chr4 117196969 117197932 -67090730 - L1MA2 LINE L1 -3144 3160 2228 691 224 246 17 chr4 117198012 117198506 -67090156 - LTR50 LTR ERVL -111 684 1 922 188 4 86 chr4 117199218 117199452 -67089210 - MER20 DNA MER1_type -4 215 1 1512 135 274 15 chr4 117199653 117199993 -67088669 + MSTA LTR MaLR 1 428 0 618 269 44 6 chr4 117200076 117200236 -67088426 + MER58A DNA MER1_type 2 167 0 327 261 38 71 chr4 117201184 117201368 -67087294 + MIR SINE MIR 35 212 -50 346 320 33 27 chr4 117201567 117201717 -67086945 - MIR SINE MIR -110 152 2 2313 115 0 0 chr4 117202022 117202334 -67086328 - AluSx SINE Alu 0 312 1 596 310 27 37 chr4 117203856 117204043 -67084619 - MIR3 SINE MIR -17 191 6 886 9 18 0 chr4 117204196 117204307 -67084355 + (TAGA)n Simple_repeat Simple_repeat 2 114 0 325 240 19 58 chr4 117205456 117205560 -67083102 + L2 LINE L2 3172 3271 -42 212 254 0 30 chr4 117205573 117205707 -67082955 + GA-rich Low_complexity Low_complexity 2 131 0 24 32 0 0 chr4 117205965 117205996 -67082666 + AT_rich Low_complexity Low_complexity 1 31 0 618 234 91 7 chr4 117206630 117206784 -67081878 - MIR SINE MIR -19 243 77 281 370 63 8 chr4 117206957 117207084 -67081578 + L2 LINE L2 3137 3270 -2 1772 161 7 16 chr4 117207132 117207436 -67081226 + AluJo SINE Alu 2 302 -10 346 270 36 18 chr4 117207727 117207838 -67080824 - MIR SINE MIR -78 130 18 187 236 0 91 chr4 117208314 117208369 -67080293 + L2 LINE L2 3210 3259 -13 208 139 0 0 chr4 117210310 117210346 -67078316 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 830 290 78 38 chr4 117210656 117211080 -67077582 - MLT1K LTR MaLR -6 582 142 1000 316 49 31 chr4 117211181 117211633 -67077029 - L3 LINE CR1 -12 1565 1106 23 0 0 0 chr4 117211926 117211949 -67076713 + AT_rich Low_complexity Low_complexity 1 23 0 584 169 93 0 chr4 117211980 117212098 -67076564 + MER7A DNA MER2_type 1 127 -219 2427 149 48 29 chr4 117212098 117212540 -67076122 - Tigger2 DNA MER2_type -1 2717 2268 369 143 32 16 chr4 117212529 117212592 -67076070 + MER8 DNA MER2_type 176 239 0 * 1133 145 82 14 chr4 117212592 117212799 -67075863 + MER7A DNA MER2_type 116 336 0 201 74 0 0 chr4 117213498 117213525 -67075137 + (T)n Simple_repeat Simple_repeat 1 27 0 201 280 133 0 chr4 117213597 117213672 -67074990 - L2 LINE L2 -5 3267 3183 343 325 73 73 chr4 117213916 117214313 -67074349 - L2 LINE L2 -1801 1513 1117 43 0 0 0 chr4 117214780 117214823 -67073839 + AT_rich Low_complexity Low_complexity 1 43 0 240 258 15 0 chr4 117218951 117219017 -67069645 - MIR SINE MIR -27 235 169 2300 115 78 5 chr4 117219770 117220154 -67068508 + MER6 DNA MER2_type 454 865 0 194 174 22 0 chr4 117220616 117220662 -67068000 + CT-rich Low_complexity Low_complexity 2 48 0 229 182 0 0 chr4 117221222 117221266 -67067396 + (CGG)n Simple_repeat Simple_repeat 2 45 0 346 258 81 8 chr4 117222697 117222821 -67065841 - MIR3 SINE MIR -27 181 49 263 296 25 57 chr4 117222920 117223050 -67065612 + MIR3 SINE MIR 3 125 -94 333 0 0 0 chr4 117223050 117223087 -67065575 + (TC)n Simple_repeat Simple_repeat 2 38 0 207 0 0 0 chr4 117223086 117223109 -67065553 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 533 251 51 23 chr4 117225701 117225876 -67062786 - MIR SINE MIR -5 257 78 442 266 55 16 chr4 117225975 117226103 -67062559 - MER5B DNA MER1_type -45 133 1 1502 113 8 8 chr4 117226124 117226363 -67062299 + L1MA6 LINE L1 6062 6300 0 203 61 30 0 chr4 117226381 117226414 -67062248 + (TA)n Simple_repeat Simple_repeat 2 35 0 203 200 0 0 chr4 117227192 117227227 -67061435 + A-rich Low_complexity Low_complexity 1 35 0 1855 147 55 33 chr4 117229367 117229734 -67058928 - THE1C LTR MaLR 0 375 1 455 228 183 30 chr4 117229959 117230156 -67058506 - MIR SINE MIR -24 238 12 457 361 60 0 chr4 117230652 117230835 -67057827 + L2 LINE L2 2566 2759 -555 451 263 41 80 chr4 117230872 117231071 -67057591 - MIR SINE MIR -18 190 2 186 328 33 16 chr4 117231460 117231521 -67057141 + L2 LINE L2 3125 3186 -86 3698 231 108 94 chr4 117231528 117232108 -67056554 - Charlie7 DNA MER1_type -40 2572 2002 2073 116 0 0 chr4 117232108 117232416 -67056246 - AluSq SINE Alu 0 308 1 3698 231 108 94 chr4 117232416 117234292 -67054370 - Charlie7 DNA MER1_type -610 2002 79 438 288 9 0 chr4 117234303 117234414 -67054248 - L2 LINE L2 -328 2985 2874 1963 133 71 37 chr4 117234640 117234992 -67053670 - THE1B LTR MaLR 0 364 1 267 226 129 0 chr4 117235370 117235432 -67053230 + MIR SINE MIR 77 146 -62 345 243 39 10 chr4 117235579 117235682 -67052980 - Charlie7 DNA MER1_type -2248 364 259 2165 95 0 20 chr4 117236074 117236370 -67052292 - AluSc SINE Alu -19 290 1 410 240 39 0 chr4 117236469 117236573 -67052089 + MIR SINE MIR 110 217 -45 270 56 0 0 chr4 117237785 117237821 -67050841 + (TG)n Simple_repeat Simple_repeat 1 36 0 344 347 34 27 chr4 117238715 117238862 -67049800 + MIR3 SINE MIR 30 177 -31 29 0 0 0 chr4 117239164 117239193 -67049469 + AT_rich Low_complexity Low_complexity 1 29 0 1517 153 30 27 chr4 117239206 117239468 -67049194 - AluJo SINE Alu -49 263 1 291 244 22 67 chr4 117239475 117239610 -67049052 - L1MC5 LINE L1 -905 7056 6928 235 261 87 29 chr4 117240064 117240202 -67048460 - HAL1b LINE L1 -7 1341 1196 827 280 14 25 chr4 117240255 117240537 -67048125 - L1ME4a LINE L1 -234 5887 5609 21 36 0 0 chr4 117240570 117240598 -67048064 + AT_rich Low_complexity Low_complexity 1 28 0 195 69 0 0 chr4 117243059 117243088 -67045574 + (TG)n Simple_repeat Simple_repeat 1 29 0 245 367 76 35 chr4 117244354 117244538 -67044124 - L3 LINE CR1 -1 1576 1372 1741 189 3 3 chr4 117244538 117244835 -67043827 - AluJb SINE Alu -15 297 1 245 367 76 35 chr4 117244835 117244966 -67043696 - L3 LINE CR1 -205 1372 1248 235 281 170 23 chr4 117245043 117245214 -67043448 + L3 LINE CR1 807 1002 -575 304 318 182 20 chr4 117245397 117245545 -67043117 - L2 LINE L2 0 3272 3101 309 26 0 0 chr4 117245915 117245953 -67042709 + (TG)n Simple_repeat Simple_repeat 1 38 0 368 368 171 20 chr4 117246228 117247116 -67041546 - L2 LINE L2 -566 2748 1727 28 29 0 0 chr4 117247443 117247478 -67041184 + AT_rich Low_complexity Low_complexity 1 35 0 1165 256 114 42 chr4 117247786 117248398 -67040264 - L1ME3 LINE L1 -240 5922 5267 2099 137 0 10 chr4 117248522 117248828 -67039834 - AluJb SINE Alu -9 303 1 29 84 0 0 chr4 117248932 117249003 -67039659 + AT_rich Low_complexity Low_complexity 1 71 0 1834 188 0 6 chr4 117249076 117249390 -67039272 - AluJo SINE Alu 0 312 1 2161 114 6 22 chr4 117249465 117249782 -67038880 + AluSq SINE Alu 1 312 -1 26 50 0 0 chr4 117251265 117251305 -67037357 + AT_rich Low_complexity Low_complexity 1 40 0 211 342 105 9 chr4 117251816 117251930 -67036732 - L2 LINE L2 -10 3303 3179 298 356 162 32 chr4 117252086 117252776 -67035886 - L2 LINE L2 -354 2960 2181 1752 174 0 28 chr4 117253241 117253562 -67035100 - AluJo SINE Alu 0 312 1 255 400 62 0 chr4 117253574 117253784 -67034878 + L2 LINE L2 2100 2322 -992 639 204 0 0 chr4 117253840 117253948 -67034714 + FLAM_A SINE Alu 18 125 -17 222 37 0 0 chr4 117254136 117254163 -67034499 + (CA)n Simple_repeat Simple_repeat 1 27 0 343 353 52 0 chr4 117254326 117254442 -67034220 + L2 LINE L2 3102 3223 -49 24 32 0 0 chr4 117254717 117254748 -67033914 + AT_rich Low_complexity Low_complexity 1 31 0 3042 101 7 0 chr4 117255479 117255913 -67032749 + L1PA15 LINE L1 5722 6158 -7 241 358 42 33 chr4 117258264 117258384 -67030278 - L2 LINE L2 -14 3258 3138 216 378 81 14 chr4 117258410 117258632 -67030030 - L2 LINE L2 -337 2977 2741 234 316 18 0 chr4 117258926 117258983 -67029679 - MER91 DNA MER1_type -82 58 1 181 220 20 20 chr4 117260432 117260482 -67028180 - MIR SINE MIR -57 205 156 1773 149 24 24 chr4 117260571 117260867 -67027795 + AluJb SINE Alu 1 296 -16 192 293 0 17 chr4 117261166 117261224 -67027438 + MIR SINE MIR 77 133 -129 241 216 20 0 chr4 117261378 117261429 -67027233 + Tigger5 DNA MER2_type 4 55 -2268 452 180 0 11 chr4 117261438 117261527 -67027135 + Tigger5 DNA MER2_type 2236 2323 0 223 207 103 0 chr4 117262364 117262422 -67026240 - MIR SINE MIR -79 183 120 280 331 81 22 chr4 117264245 117264381 -67024281 + MIR SINE MIR 45 188 -74 5616 125 193 87 chr4 117264486 117266021 -67022641 - pTR5 LTR ERV1 0 2438 742 360 0 0 0 chr4 117267202 117267242 -67021420 + (CA)n Simple_repeat Simple_repeat 2 41 0 266 361 33 16 chr4 117267934 117268056 -67020606 + L2 LINE L2 3149 3272 0 1056 238 155 24 chr4 117269382 117269807 -67018855 + MLT1D LTR MaLR 1 481 -24 998 108 48 11 chr4 117269818 117270004 -67018658 + L1MC/D LINE L1 5367 5559 -800 870 311 144 50 chr4 117270066 117270621 -67018041 + L2 LINE L2 2181 2683 -630 997 142 68 78 chr4 117270621 117270840 -67017822 + MER20 DNA MER1_type 1 217 -2 870 311 144 50 chr4 117270840 117271312 -67017350 + L2 LINE L2 2683 3305 -8 21 0 0 0 chr4 117272011 117272032 -67016630 + AT_rich Low_complexity Low_complexity 1 21 0 415 188 228 10 chr4 117273064 117273165 -67015497 - FLAM_A SINE Alu -19 123 1 1867 142 40 13 chr4 117273720 117273841 -67014821 + AluJb SINE Alu 1 117 -195 437 0 19 0 chr4 117273841 117273894 -67014768 + (CA)n Simple_repeat Simple_repeat 2 55 0 1867 142 40 13 chr4 117273894 117274074 -67014588 + AluJb SINE Alu 117 310 -2 285 293 0 0 chr4 117274138 117274220 -67014442 + CT-rich Low_complexity Low_complexity 2 83 0 252 317 138 24 chr4 117274287 117274410 -67014252 - L2 LINE L2 0 3272 3136 524 258 25 0 chr4 117275198 117275318 -67013344 - L2 LINE L2 0 3313 3191 1341 171 129 23 chr4 117275353 117275617 -67013045 + AluJb SINE Alu 1 292 -20 24 0 0 0 chr4 117276159 117276183 -67012479 + AT_rich Low_complexity Low_complexity 1 24 0 321 333 7 20 chr4 117276551 117276698 -67011964 - MIR SINE MIR 0 262 118 249 302 167 8 chr4 117279742 117279868 -67008794 - L2 LINE L2 -1 3312 3167 186 277 15 46 chr4 117280359 117280424 -67008238 + L2 LINE L2 3251 3313 0 753 349 76 35 chr4 117281013 117281717 -67006945 + L2 LINE L2 2487 3230 -42 554 244 142 34 chr4 117281699 117281904 -67006758 + MIR SINE MIR 34 260 -2 * 1293 195 13 94 chr4 117281907 117282133 -67006529 + MER2 DNA MER2_type 1 187 -157 1719 135 3 67 chr4 117282133 117282445 -67006217 + AluSx SINE Alu 1 292 -20 1293 195 13 94 chr4 117282445 117282592 -67006070 + MER2 DNA MER2_type 187 344 0 2309 103 0 10 chr4 117284087 117284399 -67004263 - AluSc SINE Alu 0 309 1 321 243 155 10 chr4 117284615 117284718 -67003944 - L2 LINE L2 -1 3312 3195 546 320 143 51 chr4 117284935 117285604 -67003058 + L2 LINE L2 2047 2777 -537 1703 242 21 27 chr4 117285865 117286340 -67002322 - MER74B LTR ERVL -93 529 58 478 259 15 23 chr4 117286400 117286531 -67002131 + L2 LINE L2 3143 3272 0 995 129 109 50 chr4 117286760 117286937 -67001725 + MER20 DNA MER1_type 1 193 -26 2346 108 0 0 chr4 117286937 117287233 -67001429 + AluSx SINE Alu 1 296 -16 995 129 109 50 chr4 117287233 117287257 -67001405 + MER20 DNA MER1_type 193 214 -5 511 298 142 15 chr4 117287591 117288000 -67000662 - MARNA DNA Mariner -48 538 78 375 297 0 0 chr4 117288383 117288474 -67000188 - MER81 DNA DNA -7 107 17 315 287 118 21 chr4 117289010 117289247 -66999415 + MIR SINE MIR 3 262 0 2368 89 0 0 chr4 117289853 117290156 -66998506 - AluSc SINE Alu -6 303 1 2259 141 43 5 chr4 117292588 117292984 -66995678 - MSTB LTR MaLR -13 413 3 319 297 153 0 chr4 117293075 117293186 -66995476 + MER5B DNA MER1_type 37 164 -14 827 210 12 49 chr4 117293206 117293449 -66995213 + MER106A DNA MER1_type 2 235 -1 2034 117 3 28 chr4 117293572 117293894 -66994768 + AluSx SINE Alu 1 315 0 2289 202 41 31 chr4 117294431 117294986 -66993676 - MER74B LTR ERVL 0 622 62 1149 162 39 97 chr4 117295370 117295678 -66992984 - MLT1A1 LTR MaLR -75 290 1 632 25 0 0 chr4 117296560 117296640 -66992022 - L1PA3 LINE L1 -3 6152 6073 445 294 92 11 chr4 117296973 117297157 -66991505 - MIR SINE MIR -14 248 50 213 259 140 77 chr4 117297530 117297673 -66990989 + L2 LINE L2 3121 3272 0 906 221 81 5 chr4 117298948 117299170 -66989492 - MIR SINE MIR 0 262 24 2038 142 0 0 chr4 117299172 117299461 -66989201 - AluSx SINE Alu -8 304 16 377 289 41 0 chr4 117300592 117300713 -66987949 - MIR SINE MIR -65 143 18 403 280 180 71 chr4 117302994 117303855 -66984807 + L2 LINE L2 1716 2670 -644 226 287 79 69 chr4 117304181 117304397 -66984265 + L2 LINE L2 2844 3061 -211 345 268 143 18 chr4 117304710 117304878 -66983784 + MER5A DNA MER1_type 1 189 0 1239 179 40 20 chr4 117307093 117307344 -66981318 + AluJb SINE Alu 1 256 -56 186 306 122 0 chr4 117307533 117307631 -66981031 - MIR SINE MIR -47 215 106 201 242 15 45 chr4 117307637 117307703 -66980959 + MIR SINE MIR 199 262 0 291 274 157 45 chr4 117309752 117309975 -66978687 + MIR SINE MIR 5 252 -10 184 343 38 29 chr4 117310002 117310107 -66978555 - L2 LINE L2 -171 3101 2996 606 295 32 6 chr4 117310119 117310275 -66978387 - L2 LINE L2 -2 3270 3111 2145 118 0 3 chr4 117310310 117310616 -66978046 - AluSx SINE Alu -7 305 1 2389 101 0 0 chr4 117310846 117311154 -66977508 - AluSx SINE Alu -4 308 1 211 286 114 0 chr4 117311531 117311601 -66977061 - L2 LINE L2 -338 2976 2899 * 314 339 96 42 chr4 117311574 117312138 -66976524 - L2 LINE L2 -215 3057 2447 841 207 71 10 chr4 117312148 117312346 -66976316 - Charlie1 DNA MER1_type -2551 210 1 22 0 0 0 chr4 117312846 117312868 -66975794 + AT_rich Low_complexity Low_complexity 1 22 0 186 171 0 0 chr4 117312917 117312958 -66975704 + (TG)n Simple_repeat Simple_repeat 2 42 0 675 322 26 4 chr4 117315065 117315298 -66973364 - MIR SINE MIR -1 261 24 320 258 0 90 chr4 117315343 117315432 -66973230 + MIR SINE MIR 18 98 -164 225 160 0 173 chr4 117315433 117315508 -66973154 + Charlie5 DNA MER1_type 2523 2584 -28 517 51 13 13 chr4 117315544 117315622 -66973040 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 365 302 87 47 chr4 117315639 117316024 -66972638 + L2 LINE L2 2652 3050 -222 2124 102 0 7 chr4 117316296 117316579 -66972083 + AluSc SINE Alu 15 295 -14 2759 10 0 7 chr4 117316665 117316975 -66971687 + AluYa5 SINE Alu 1 308 -3 379 301 42 67 chr4 117318300 117318493 -66970169 + MIR3 SINE MIR 18 205 -3 227 193 35 35 chr4 117318531 117318588 -66970074 + CT-rich Low_complexity Low_complexity 3 59 0 230 0 33 0 chr4 117318588 117318618 -66970044 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 513 256 45 0 chr4 117318682 117318815 -66969847 + MIR SINE MIR 71 209 -53 1923 157 0 13 chr4 117318859 117319159 -66969503 - AluJb SINE Alu -16 296 1 240 206 222 0 chr4 117319254 117319285 -66969377 - AluJo SINE Alu -140 162 139 273 75 0 0 chr4 117319285 117319325 -66969337 + (TATG)n Simple_repeat Simple_repeat 3 42 0 240 206 222 0 chr4 117319325 117319356 -66969306 - AluJo SINE Alu -163 139 86 335 210 0 16 chr4 117319761 117319823 -66968839 - AluJ/FRAM SINE Alu -24 278 218 206 61 0 30 chr4 117320548 117320581 -66968081 + (TTTC)n Simple_repeat Simple_repeat 4 35 0 21 0 0 0 chr4 117321027 117321048 -66967614 + AT_rich Low_complexity Low_complexity 1 21 0 285 181 28 14 chr4 117321349 117321421 -66967241 - HAL1 LINE L1 -2 2505 2433 1634 234 108 42 chr4 117321574 117321973 -66966689 - HAL1 LINE L1 -167 2340 1969 2023 110 43 0 chr4 117321973 117322254 -66966408 - AluSg SINE Alu -17 293 1 1634 234 108 42 chr4 117322254 117322568 -66966094 - HAL1 LINE L1 -538 1969 1580 714 239 236 76 chr4 117322600 117322804 -66965858 - HAL1 LINE L1 -1160 1347 1177 1877 109 103 29 chr4 117322804 117323153 -66965509 - THE1C LTR MaLR 0 375 1 714 239 236 76 chr4 117323153 117323686 -66964976 - HAL1 LINE L1 -1330 1177 492 390 272 161 6 chr4 117323741 117323903 -66964759 - HAL1 LINE L1 -2127 380 194 7680 20 0 0 chr4 117323948 117325454 -66963208 - L1PA4 LINE L1 -15 6140 4635 200 163 47 0 chr4 117326809 117326852 -66961810 + CT-rich Low_complexity Low_complexity 2 46 0 231 36 0 0 chr4 117326852 117326880 -66961782 + (CA)n Simple_repeat Simple_repeat 1 28 0 690 100 0 0 chr4 117326924 117327024 -66961638 + (TA)n Simple_repeat Simple_repeat 1 100 0 243 22 44 22 chr4 117327097 117327142 -66961520 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 234 231 0 0 chr4 117327831 117327883 -66960779 + L2 LINE L2 3257 3308 -5 181 222 111 0 chr4 117328023 117328077 -66960585 + L2 LINE L2 3213 3272 0 203 133 0 0 chr4 117329226 117329256 -66959406 + (CA)n Simple_repeat Simple_repeat 1 30 0 213 327 26 64 chr4 117329330 117329486 -66959176 + MER5A DNA MER1_type 38 187 -2 554 258 152 0 chr4 117329538 117329689 -66958973 - MER5A DNA MER1_type -7 182 9 240 271 0 0 chr4 117329825 117329873 -66958789 - L2 LINE L2 -6 3266 3219 2329 119 11 8 chr4 117329937 117330291 -66958371 - THE1A LTR MaLR 0 355 1 290 243 14 14 chr4 117331414 117331484 -66957178 - L2 LINE L2 -2 3311 3242 2288 123 0 0 chr4 117331628 117331930 -66956732 - AluSx SINE Alu -10 302 1 3410 78 4 0 chr4 117332088 117332549 -66956113 - L1PA8 LINE L1 0 6172 5710 6013 184 62 19 chr4 117332714 117333848 -66954814 + Charlie1a DNA MER1_type 1 1210 -1551 2011 124 33 0 chr4 117333848 117334147 -66954515 + AluSx SINE Alu 1 308 0 6013 184 62 19 chr4 117334147 117334404 -66954258 + Charlie1a DNA MER1_type 1210 1454 -1 349 309 24 24 chr4 117334859 117334982 -66953680 - MIR SINE MIR -57 151 29 22 35 0 0 chr4 117334986 117335015 -66953647 + AT_rich Low_complexity Low_complexity 1 29 0 1756 92 22 0 chr4 117335913 117336140 -66952522 + AluSq SINE Alu 67 298 -15 2762 130 24 2 chr4 117337881 117338334 -66950328 - L1MA4 LINE L1 -369 5931 5466 1633 145 72 13 chr4 117338334 117338650 -66950012 + L1MA4 LINE L1 5955 6291 -9 1828 81 4 0 chr4 117338684 117338930 -66949732 + L1PA14 LINE L1 5907 6153 -8 26 0 0 0 chr4 117339234 117339260 -66949402 + AT_rich Low_complexity Low_complexity 1 26 0 392 309 68 38 chr4 117339308 117339544 -66949118 - MIR SINE MIR -15 247 5 23 0 0 0 chr4 117340442 117340465 -66948197 + AT_rich Low_complexity Low_complexity 1 23 0 639 282 78 27 chr4 117341304 117341598 -66947064 - LTR33 LTR ERVL -1 520 212 1453 159 19 94 chr4 117342055 117342364 -66946298 - AluSx SINE Alu -26 286 1 2209 92 0 3 chr4 117342371 117342784 -66945878 - AluSg SINE Alu 0 412 1 37 62 0 0 chr4 117344341 117344406 -66944256 + AT_rich Low_complexity Low_complexity 1 65 0 202 149 0 43 chr4 117345162 117345209 -66943453 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 23 33 0 0 chr4 117345407 117345437 -66943225 + AT_rich Low_complexity Low_complexity 1 30 0 180 97 0 0 chr4 117347917 117347948 -66940714 + (T)n Simple_repeat Simple_repeat 1 31 0 26 0 0 0 chr4 117348403 117348429 -66940233 + AT_rich Low_complexity Low_complexity 1 26 0 41 48 0 0 chr4 117348627 117348689 -66939973 + AT_rich Low_complexity Low_complexity 1 62 0 240 270 0 16 chr4 117352358 117352421 -66936241 - MIR SINE MIR -15 247 186 745 155 0 0 chr4 117352446 117352562 -66936100 + FLAM_C SINE Alu 1 116 -27 222 37 0 0 chr4 117352562 117352589 -66936073 + (TAA)n Simple_repeat Simple_repeat 2 28 0 23 78 0 0 chr4 117356684 117356735 -66931927 + AT_rich Low_complexity Low_complexity 1 51 0 585 273 53 44 chr4 117357361 117357418 -66931244 - MIR SINE MIR -13 249 194 522 256 107 29 chr4 117357418 117357660 -66931002 - MIR SINE MIR -1 261 1 585 273 53 44 chr4 117357660 117357829 -66930833 - MIR SINE MIR -68 194 21 564 241 162 31 chr4 117358803 117359031 -66929631 - MIR SINE MIR -2 260 3 896 319 12 0 chr4 117359628 117359876 -66928786 + MIR SINE MIR 12 262 0 525 233 17 8 chr4 117361545 117361665 -66926997 - MER5A DNA MER1_type -67 122 2 195 382 53 8 chr4 117362103 117362234 -66926428 - L3b LINE CR1 -131 1452 1316 468 83 0 0 chr4 117362749 117362870 -66925792 - AluSg/x SINE Alu 0 339 219 189 94 0 0 chr4 117362874 117362906 -66925756 + (TTTTTG)n Simple_repeat Simple_repeat 3 34 0 2252 126 0 0 chr4 117363364 117363673 -66924989 + AluSx SINE Alu 1 309 -3 855 105 0 0 chr4 117364232 117364346 -66924316 - AluSg/x SINE Alu -5 304 191 193 148 0 0 chr4 117364963 117364990 -66923672 - MIR SINE MIR -17 245 219 787 203 55 16 chr4 117364999 117365181 -66923481 + AluJb SINE Alu 113 301 -11 23 0 0 0 chr4 117365658 117365681 -66922981 + AT_rich Low_complexity Low_complexity 1 23 0 521 257 123 18 chr4 117365741 117365912 -66922750 + MIR SINE MIR 74 262 0 2126 140 7 0 chr4 117366760 117367067 -66921595 - AluSq SINE Alu -4 309 1 345 333 145 37 chr4 117367362 117367713 -66920949 - L3b LINE CR1 -61 1522 1134 1816 249 88 34 chr4 117368065 117368916 -66919746 - L2 LINE L2 -2 3311 2420 2152 135 0 0 chr4 117369758 117370054 -66918608 + AluSq SINE Alu 1 296 -17 759 285 19 39 chr4 117370082 117370342 -66918320 + MIR SINE MIR 8 262 0 2744 7 0 7 chr4 117370895 117371199 -66917463 - AluYa5 SINE Alu -9 302 1 246 333 49 10 chr4 117371199 117371301 -66917361 + L3 LINE CR1 1346 1451 -126 2903 173 238 58 chr4 117373732 117374596 -66914066 - LTR28 LTR ERV1 0 1020 1 2089 133 3 10 chr4 117374854 117375162 -66913500 - AluSx SINE Alu -6 306 1 256 292 97 35 chr4 117375216 117375329 -66913333 + L2 LINE L2 3149 3268 -4 1605 154 11 21 chr4 117375979 117376258 -66912404 + AluJo SINE Alu 1 276 -36 24 0 0 0 chr4 117376264 117376288 -66912374 + AT_rich Low_complexity Low_complexity 1 24 0 203 0 0 36 chr4 117376988 117377016 -66911646 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 215 239 46 83 chr4 117377906 117378015 -66910647 - L2 LINE L2 -230 3042 2938 995 244 73 3 chr4 117378100 117378403 -66910259 - MER58B DNA MER1_type -9 332 9 273 286 34 42 chr4 117378424 117378543 -66910119 - L2 LINE L2 -556 2758 2641 22 0 0 0 chr4 117379058 117379080 -66909582 + AT_rich Low_complexity Low_complexity 1 22 0 347 160 13 0 chr4 117380163 117380238 -66908424 + (ATG)n Simple_repeat Simple_repeat 2 77 0 212 314 107 0 chr4 117380242 117380363 -66908299 - MIR SINE MIR -11 251 118 37 39 0 0 chr4 117380473 117380524 -66908138 + AT_rich Low_complexity Low_complexity 1 51 0 197 373 15 0 chr4 117380700 117380767 -66907895 + L2 LINE L2 3205 3272 0 2344 60 0 0 chr4 117380913 117381226 -66907436 - AluY SINE Alu 0 313 1 180 333 43 93 chr4 117381362 117381641 -66907021 + L2 LINE L2 2820 3084 -188 259 278 28 83 chr4 117381681 117381825 -66906837 - MER5A DNA MER1_type -45 144 9 413 298 59 87 chr4 117383293 117384061 -66904601 + L1MEd LINE L1 400 1145 -4974 497 303 69 15 chr4 117384061 117384322 -66904340 + L1MEd LINE L1 2280 2554 -3575 2404 97 0 7 chr4 117384746 117385054 -66903608 - AluSg SINE Alu -4 306 1 24 77 0 0 chr4 117385064 117385116 -66903546 + AT_rich Low_complexity Low_complexity 1 52 0 373 295 0 0 chr4 117385245 117385340 -66903322 + MIR3 SINE MIR 113 207 -1 42010 40 1 2 chr4 117388183 117394344 -66894318 - L1PA3 LINE L1 0 6155 4 2015 148 13 0 chr4 117394410 117394708 -66893954 + AluSx SINE Alu 1 302 -10 1080 217 55 52 chr4 117397621 117397985 -66890677 - MLT1A1 LTR MaLR 0 365 1 1037 179 44 0 chr4 117398038 117398289 -66890373 + L1MA4 LINE L1 6035 6296 -4 438 221 50 21 chr4 117398719 117398859 -66889803 - MER31A-int LTR ERV1 -3100 4437 4294 609 153 98 110 chr4 117398889 117399143 -66889519 - MER31A-int LTR ERV1 -3608 1328 1078 4040 160 16 9 chr4 117399147 117399915 -66888747 + L1MA4 LINE L1 5487 6259 -41 42139 41 1 1 chr4 117399920 117406068 -66882594 + L1PA4 LINE L1 7 6152 -3 260 132 19 0 chr4 117406090 117406144 -66882518 + L1MA5A LINE L1 6242 6293 -4 511 186 36 15 chr4 117406148 117406317 -66882345 - MER31A-int LTR ERV1 -3133 1738 887 419 250 76 23 chr4 117406354 117406486 -66882176 - MER31A-int LTR ERV1 -4182 754 616 * 627 220 23 42 chr4 117406477 117406691 -66881971 - MER31A-int LTR ERV1 -4526 410 201 458 188 51 34 chr4 117406658 117406775 -66881887 - MER31A-int LTR ERV1 -4646 290 172 * 1283 177 262 6 chr4 117407005 117407349 -66881313 - MER31A LTR ERV1 0 485 54 472 308 70 0 chr4 117407464 117407620 -66881042 - MIR SINE MIR -70 192 26 278 269 86 0 chr4 117407741 117407834 -66880828 - MIR3 SINE MIR -26 182 82 218 368 0 0 chr4 117407848 117407924 -66880738 + L2 LINE L2 2552 2627 -687 5133 143 22 12 chr4 117407924 117408768 -66879894 + L1PB4 LINE L1 4955 5811 -345 198 71 0 0 chr4 117408768 117408796 -66879866 + (TG)n Simple_repeat Simple_repeat 1 28 0 5133 143 22 12 chr4 117408796 117409133 -66879529 + L1PB4 LINE L1 5811 6143 -13 24 0 0 0 chr4 117409133 117409157 -66879505 + AT_rich Low_complexity Low_complexity 1 24 0 1873 166 0 0 chr4 117409487 117409794 -66878868 + AluSx SINE Alu 1 307 0 205 310 11 46 chr4 117409910 117409997 -66878665 + L2 LINE L2 3189 3272 0 688 331 124 34 chr4 117410068 117410963 -66877699 - L2 LINE L2 -5 3308 2334 854 247 63 29 chr4 117411011 117411250 -66877412 - MIR SINE MIR 0 262 16 242 216 189 18 chr4 117411645 117411756 -66876906 - L2 LINE L2 -56 3257 3128 12358 142 10 3 chr4 117411942 117414562 -66874100 - L1P4 LINE L1 -430 5738 3106 508 351 93 46 chr4 117414584 117415348 -66873314 + L2 LINE L2 2174 2973 -341 2835 13 0 0 chr4 117415798 117416110 -66872552 - AluYb8 SINE Alu -6 312 1 245 197 92 13 chr4 117416187 117416263 -66872399 + MER69 DNA AcHobo 2438 2519 -7 238 268 42 0 chr4 117417143 117417214 -66871448 + MIR SINE MIR 66 139 -123 259 330 122 17 chr4 117417396 117417511 -66871151 - L2 LINE L2 -1 3271 3145 194 281 62 16 chr4 117417528 117417587 -66871075 - MIR SINE MIR -185 77 16 560 287 6 6 chr4 117417587 117417744 -66870918 + MIR SINE MIR 1 157 -105 2743 10 0 3 chr4 117419237 117419544 -66869118 + AluYa5 SINE Alu 1 306 -5 365 325 183 5 chr4 117419631 117419828 -66868834 + MIR SINE MIR 20 251 -11 397 268 104 44 chr4 117419924 117420298 -66868364 - L1MEd LINE L1 -4863 1256 957 390 91 0 0 chr4 117420298 117420353 -66868309 + (TG)n Simple_repeat Simple_repeat 2 56 0 333 102 0 0 chr4 117420352 117420411 -66868251 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 * 560 358 33 4 chr4 117420423 117420666 -66867996 - L1MEd LINE L1 -5429 690 441 400 316 89 6 chr4 117421622 117421780 -66866882 - MIR3 SINE MIR -5 203 33 1618 58 10 0 chr4 117423202 117423409 -66865253 - L1PA7 LINE L1 -13 6141 5933 466 274 47 0 chr4 117423678 117423784 -66864878 - L2 LINE L2 -14 3299 3189 909 244 19 0 chr4 117423785 117423994 -66864668 - MER58A DNA MER1_type -1 223 11 292 267 0 0 chr4 117423994 117424054 -66864608 - L2 LINE L2 -823 2491 2432 237 219 179 97 chr4 117424093 117424273 -66864389 - L2 LINE L2 -1496 1818 1619 1601 138 109 14 chr4 117424273 117424556 -66864106 + AluSx SINE Alu 1 310 -2 237 219 179 97 chr4 117424556 117424571 -66864091 - L2 LINE L2 -1695 1619 1607 562 100 20 20 chr4 117424571 117424671 -66863991 + (GAAA)n Simple_repeat Simple_repeat 1 100 0 1998 158 0 0 chr4 117424728 117425020 -66863642 + AluJb SINE Alu 9 300 -12 320 303 22 0 chr4 117425021 117425110 -66863552 - L2 LINE L2 -1791 1523 1433 1329 83 0 0 chr4 117426097 117426265 -66862397 - AluSg/x SINE Alu -16 296 129 182 257 14 68 chr4 117426569 117426643 -66862019 + MIR SINE MIR 75 144 -64 424 325 66 41 chr4 117427159 117427356 -66861306 + MIR SINE MIR 5 206 -56 22 0 0 0 chr4 117429252 117429274 -66859388 + AT_rich Low_complexity Low_complexity 1 22 0 245 209 35 58 chr4 117429516 117429602 -66859060 - MLT1K LTR MaLR 0 588 505 468 231 98 54 chr4 117430060 117430263 -66858399 + MIR SINE MIR 5 216 -46 236 320 0 13 chr4 117431173 117431248 -66857414 + L2 LINE L2 3017 3090 -182 207 268 49 37 chr4 117431267 117431349 -66857313 + L2 LINE L2 3220 3302 -11 * 249 299 15 0 chr4 117431323 117431390 -66857272 - L2 LINE L2 0 3313 3246 283 360 54 40 chr4 117431746 117432024 -66856638 + L2 LINE L2 1297 1578 -1736 1027 157 60 69 chr4 117432177 117432393 -66856269 - MER20 DNA MER1_type -4 215 2 439 200 61 17 chr4 117433169 117433284 -66855378 + MIR SINE MIR 1 120 -142 246 62 0 0 chr4 117433346 117433378 -66855284 + (CAT)n Simple_repeat Simple_repeat 2 33 0 2460 32 0 49 chr4 117433654 117433962 -66854700 - AluY SINE Alu -18 293 1 366 287 103 40 chr4 117435700 117435874 -66852788 + MIR SINE MIR 28 212 -50 430 262 213 41 chr4 117436032 117436253 -66852409 + MIR SINE MIR 1 259 -3 827 294 48 0 chr4 117437023 117437251 -66851411 - MIR SINE MIR 0 262 24 364 325 102 35 chr4 117437550 117437747 -66850915 + L1ME3A LINE L1 2609 2818 -3328 414 264 104 12 chr4 117437768 117437931 -66850731 + MLT1J2 LTR MaLR 39 216 -234 273 139 4 4 chr4 117438018 117438075 -66850587 + MLT1J1 LTR MaLR 346 407 -43 554 295 103 14 chr4 117438193 117438497 -66850165 + L1ME3A LINE L1 3030 3359 -2787 1711 211 48 37 chr4 117438509 117438969 -66849693 + LTR40a LTR ERVL 54 518 -1 2233 101 3 0 chr4 117439123 117439411 -66849251 + AluSc SINE Alu 6 294 -15 522 275 157 34 chr4 117439413 117440271 -66848391 + L1ME3A LINE L1 4946 5911 -310 2506 62 0 0 chr4 117440643 117440952 -66847710 - AluY SINE Alu -2 309 1 226 250 103 0 chr4 117441387 117441455 -66847207 + L2 LINE L2 3206 3280 -33 652 318 27 27 chr4 117441834 117442057 -66846605 + MIR SINE MIR 17 239 -23 264 149 0 0 chr4 117442095 117442142 -66846520 + (ATGGTG)n Simple_repeat Simple_repeat 4 50 0 843 174 53 32 chr4 117442157 117442347 -66846315 + MER2 DNA MER2_type 2 195 -150 910 255 96 26 chr4 117443021 117443366 -66845296 + MER57B LTR ERV1 66 434 0 193 404 0 0 chr4 117443981 117444038 -66844624 + L2 LINE L2 3138 3194 -78 2322 79 0 0 chr4 117444289 117444567 -66844095 + AluSc SINE Alu 3 280 -29 596 104 0 0 chr4 117444490 117444567 -66844095 + AluSc SINE Alu 204 304 0 196 42 0 0 chr4 117444567 117444591 -66844071 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1050 281 136 47 chr4 117444596 117445343 -66843319 - L2 LINE L2 -23 3290 2457 401 267 0 0 chr4 117445344 117445430 -66843232 - L2 LINE L2 -1142 2172 2087 * 434 241 78 0 chr4 117445427 117445543 -66843119 + L2 LINE L2 2192 2316 -998 1844 272 88 32 chr4 117445622 117446489 -66842173 + L2 LINE L2 2315 3231 -82 2051 80 63 25 chr4 117446489 117446775 -66841887 - AluSp SINE Alu -16 297 1 1844 272 88 32 chr4 117446775 117446859 -66841803 + L2 LINE L2 3231 3309 -4 212 281 146 0 chr4 117446861 117446943 -66841719 - L2 LINE L2 -1237 2077 1984 265 264 56 0 chr4 117447209 117447281 -66841381 - L2 LINE L2 -3 3310 3235 246 81 0 0 chr4 117447453 117447490 -66841172 + (CA)n Simple_repeat Simple_repeat 2 38 0 364 330 43 43 chr4 117447500 117447782 -66840880 + L2 LINE L2 1719 2000 -1314 184 100 67 0 chr4 117447831 117447861 -66840801 - L2 LINE L2 0 3272 3241 221 167 185 0 chr4 117448227 117448281 -66840381 + MIR SINE MIR 82 145 -117 2222 106 44 33 chr4 117448307 117448667 -66839995 + THE1B LTR MaLR 1 364 0 194 283 75 0 chr4 117448738 117448791 -66839871 - MIR SINE MIR 0 262 206 2069 137 7 0 chr4 117448923 117449223 -66839439 - AluSx SINE Alu -10 302 1 2444 67 0 13 chr4 117449238 117449553 -66839109 - AluY SINE Alu 0 311 1 344 321 15 29 chr4 117450477 117450614 -66838048 + MIR SINE MIR 15 149 -113 311 303 185 0 chr4 117452476 117452638 -66836024 - MIR SINE MIR -12 250 59 1351 181 14 72 chr4 117452805 117453098 -66835564 - AluJo SINE Alu -10 302 27 324 312 211 0 chr4 117453283 117453392 -66835270 - L2 LINE L2 0 3313 3182 448 169 0 0 chr4 117453411 117453482 -66835180 - FRAM/FAM SINE Alu -88 88 18 504 0 0 0 chr4 117453543 117453599 -66835063 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 1228 292 42 16 chr4 117453677 117454108 -66834554 + MLT1J LTR MaLR 68 509 -2 324 283 127 6 chr4 117454114 117454280 -66834382 - L2 LINE L2 -185 3128 2943 227 324 14 0 chr4 117454386 117454457 -66834205 - L2 LINE L2 -358 2956 2885 542 199 102 82 chr4 117505916 117506112 -66782550 + L2 LINE L2 3113 3312 -1 252 0 0 0 chr4 117506811 117506839 -66781823 + (A)n Simple_repeat Simple_repeat 1 28 0 347 204 150 18 chr4 117507620 117507733 -66780929 + L2 LINE L2 3019 3146 -167 555 162 9 36 chr4 117507735 117507846 -66780816 - LTR16B LTR ERVL 0 464 357 324 255 60 76 chr4 117508187 117508294 -66780368 + L2 LINE L2 3128 3235 -78 1786 126 66 33 chr4 117508294 117508659 -66780003 - L1MA8 LINE L1 -3 6288 5912 324 255 60 76 chr4 117508659 117508712 -66779950 + L2 LINE L2 3235 3287 -26 2290 96 0 3 chr4 117508712 117509013 -66779649 + AluSx SINE Alu 1 300 -12 324 255 60 76 chr4 117509013 117509035 -66779627 + L2 LINE L2 3287 3308 -5 23 33 0 0 chr4 117509135 117509165 -66779497 + AT_rich Low_complexity Low_complexity 1 30 0 1613 143 59 37 chr4 117509267 117509588 -66779074 + THE1C LTR MaLR 48 375 0 381 356 73 24 chr4 117509758 117510047 -66778615 - L2 LINE L2 -858 2456 2154 203 136 23 23 chr4 117510426 117510470 -66778192 + T-rich Low_complexity Low_complexity 2 45 0 775 231 26 1 chr4 117510564 117510744 -66777918 - L1ME1 LINE L1 -2 6182 5991 2023 207 163 18 chr4 117510746 117511320 -66777342 + MLT1E2 LTR MaLR 1 626 0 308 184 42 22 chr4 117511334 117511471 -66777191 - L1ME1 LINE L1 -193 5973 5789 342 298 121 0 chr4 117512119 117512243 -66776419 + MIR SINE MIR 80 218 -44 217 214 0 0 chr4 117512274 117512316 -66776346 + (CA)n Simple_repeat Simple_repeat 1 42 0 2013 142 7 0 chr4 117512350 117512645 -66776017 + AluSx SINE Alu 1 297 -15 220 241 0 35 chr4 117513077 117513164 -66775498 + A-rich Low_complexity Low_complexity 1 84 0 355 308 17 0 chr4 117514946 117515066 -66773596 + L1ME LINE L1 5532 5653 -468 1715 174 13 13 chr4 117515567 117515878 -66772784 + AluJb SINE Alu 1 311 -1 424 154 0 0 chr4 117516748 117516813 -66771849 - AluS SINE Alu -239 74 10 809 285 74 39 chr4 117516814 117517347 -66771315 + L2 LINE L2 2648 3202 -111 408 179 60 0 chr4 117517766 117517883 -66770779 + CT-rich Low_complexity Low_complexity 4 127 0 694 204 8 8 chr4 117517884 117518016 -66770646 - FLAM_C SINE Alu 0 133 2 2209 108 3 0 chr4 117518026 117518322 -66770340 - AluSx SINE Alu -15 297 1 22 0 0 0 chr4 117520289 117520311 -66768351 + AT_rich Low_complexity Low_complexity 1 22 0 2337 74 3 3 chr4 117520720 117521019 -66767643 + AluY SINE Alu 1 299 -12 340 294 81 64 chr4 117521361 117521596 -66767066 - MIR SINE MIR -3 259 21 33 0 0 0 chr4 117522845 117522878 -66765784 + AT_rich Low_complexity Low_complexity 1 33 0 1363 193 56 35 chr4 117523171 117523456 -66765206 - AluJo SINE Alu -21 291 1 391 105 0 0 chr4 117524072 117524129 -66764533 + Alu SINE Alu 238 294 -8 902 159 13 13 chr4 117525406 117525563 -66763099 + AluSg/x SINE Alu 142 298 -12 7827 122 23 7 chr4 117526208 117527576 -66761086 + L1P4 LINE L1 4059 5453 -710 784 33 0 0 chr4 117527583 117527675 -66760987 + L1PA11 LINE L1 6057 6148 -26 202 28 28 28 chr4 117527675 117527711 -66760951 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 37275 89 11 10 chr4 117528129 117533594 -66755068 + L1P2 LINE L1 11 5481 -673 2127 104 0 44 chr4 117533594 117533910 -66754752 + AluY SINE Alu 1 302 -9 37275 89 11 10 chr4 117533910 117534062 -66754600 + L1P2 LINE L1 5481 5631 -523 1642 170 20 43 chr4 117534891 117534946 -66753716 + AluSx SINE Alu 1 56 -256 8202 52 3 0 chr4 117534946 117535909 -66752753 + LTR5 LTR ERVK 1 966 -3 1642 170 20 43 chr4 117535909 117536153 -66752509 + AluSx SINE Alu 56 293 -19 517 192 214 28 chr4 117537053 117537235 -66751427 - MIR SINE MIR -38 224 9 27 29 0 0 chr4 117537299 117537333 -66751329 + AT_rich Low_complexity Low_complexity 1 34 0 243 339 112 14 chr4 117537563 117537840 -66750822 - L2 LINE L2 -164 3108 2805 294 311 97 104 chr4 117538605 117538894 -66749768 - L2 LINE L2 -6 3266 2980 1081 153 0 0 chr4 117539137 117539313 -66749349 + L1MA2 LINE L1 6089 6264 -40 25 0 0 0 chr4 117539819 117539844 -66748818 + AT_rich Low_complexity Low_complexity 1 25 0 1526 128 9 5 chr4 117539925 117540144 -66748518 + AluSg/x SINE Alu 83 302 -10 751 119 0 0 chr4 117541263 117541372 -66747290 + AluSp/q SINE Alu 192 300 -13 618 290 81 9 chr4 117541372 117541593 -66747069 - L2 LINE L2 -657 2657 2421 182 176 0 0 chr4 117541634 117541668 -66746994 - L2 LINE L2 -990 2324 2291 21 57 0 0 chr4 117542190 117542225 -66746437 + AT_rich Low_complexity Low_complexity 1 35 0 2008 124 8 77 chr4 117542358 117542720 -66745942 + MER1B DNA MER1_type 1 337 0 234 307 66 58 chr4 117543553 117543690 -66744972 - L2 LINE L2 -1 3312 3175 2132 110 7 7 chr4 117544331 117544621 -66744041 + AluSq SINE Alu 1 290 -23 3383 302 96 41 chr4 117545130 117545179 -66743483 - L2 LINE L2 -13 3300 3255 1428 173 48 75 chr4 117545179 117545554 -66743108 + MLT1A1 LTR MaLR 1 365 0 3383 302 96 41 chr4 117545554 117546280 -66742382 - L2 LINE L2 -58 3255 2571 2053 124 0 0 chr4 117546280 117546562 -66742100 + AluSx SINE Alu 1 304 0 199 0 0 0 chr4 117546562 117546584 -66742078 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 3383 302 96 41 chr4 117546584 117548106 -66740556 - L2 LINE L2 -742 2571 911 658 111 0 0 chr4 117548113 117548203 -66740459 - AluSp/q SINE Alu -18 295 206 450 286 169 0 chr4 117548205 117548359 -66740303 + MER5A DNA MER1_type 9 188 -1 273 184 0 0 chr4 117548359 117548397 -66740265 + MIR SINE MIR 212 249 -13 2061 123 7 7 chr4 117548665 117548958 -66739704 + AluSq SINE Alu 1 293 -20 182 328 62 0 chr4 117548982 117549046 -66739616 - L2 LINE L2 0 3313 3246 743 222 12 48 chr4 117549242 117549409 -66739253 - MER45A DNA AcHobo -3 175 15 2004 132 24 0 chr4 117549420 117549709 -66738953 - AluSg SINE Alu -14 296 1 4061 118 19 131 chr4 117550037 117551597 -66737065 - pTR5 LTR ERV1 0 2606 1524 388 261 56 24 chr4 117552181 117552279 -66736383 - MIR SINE MIR -64 144 46 3871 108 36 69 chr4 117552279 117552993 -66735669 + LTR8 LTR ERV1 1 691 0 388 261 56 24 chr4 117552993 117553022 -66735640 - MIR SINE MIR -162 46 19 210 37 0 0 chr4 117553355 117553382 -66735280 + (TG)n Simple_repeat Simple_repeat 2 28 0 45 55 0 0 chr4 117553428 117553501 -66735161 + AT_rich Low_complexity Low_complexity 1 73 0 21 71 0 0 chr4 117553591 117553633 -66735029 + AT_rich Low_complexity Low_complexity 1 42 0 554 261 64 5 chr4 117553839 117554057 -66734605 - L1M4 LINE L1 -1781 4365 4135 625 261 130 38 chr4 117554091 117554639 -66734023 - L1MDa LINE L1 -4594 1946 1349 1589 149 6 49 chr4 117554860 117555188 -66733474 + L1MB3 LINE L1 5859 6172 -11 22 0 0 0 chr4 117555206 117555228 -66733434 + AT_rich Low_complexity Low_complexity 1 22 0 7882 133 9 18 chr4 117555829 117556478 -66732184 - Tigger1 DNA MER2_type 0 2418 1764 320 0 25 0 chr4 117556478 117556518 -66732144 + (TTG)n Simple_repeat Simple_repeat 2 42 0 7882 133 9 18 chr4 117556518 117556919 -66731743 - Tigger1 DNA MER2_type -654 1764 1379 2329 75 0 0 chr4 117556919 117557221 -66731441 + AluY SINE Alu 1 302 0 7882 133 9 18 chr4 117557221 117557448 -66731214 - Tigger1 DNA MER2_type -1039 1379 1151 3311 64 2 2 chr4 117557549 117557973 -66730689 + L1PA6 LINE L1 5728 6151 -3 2025 116 7 10 chr4 117558046 117558348 -66730314 + AluSp SINE Alu 9 309 -4 540 295 51 0 chr4 117559407 117559563 -66729099 + MIR3 SINE MIR 39 202 -6 26 50 0 0 chr4 117559570 117559610 -66729052 + AT_rich Low_complexity Low_complexity 1 40 0 254 274 0 0 chr4 117559803 117559865 -66728797 - L2 LINE L2 0 3313 3252 * 270 318 38 53 chr4 117559861 117559993 -66728669 + MIR SINE MIR 115 244 -18 274 304 33 22 chr4 117560035 117560127 -66728535 - MIR3 SINE MIR -51 157 65 362 327 60 30 chr4 117560288 117560456 -66728206 - MIR SINE MIR -70 192 20 347 324 107 91 chr4 117560563 117561079 -66727583 + L3 LINE CR1 630 1153 -424 727 310 93 32 chr4 117561542 117561855 -66726807 + L3 LINE CR1 1235 1566 -11 905 166 200 0 chr4 117562506 117562681 -66725981 - MER20 DNA MER1_type -6 213 4 240 337 56 0 chr4 117562718 117562807 -66725855 - L2 LINE L2 -460 2854 2761 592 163 271 8 chr4 117562913 117563042 -66725620 - MER20 DNA MER1_type -50 169 7 457 305 79 6 chr4 117563082 117563259 -66725403 - L2 LINE L2 -460 2854 2665 385 298 79 17 chr4 117563268 117563446 -66725216 - L2 LINE L2 -1153 2161 1973 240 227 160 40 chr4 117563790 117563865 -66724797 - L2 LINE L2 -5 3267 3184 265 323 32 11 chr4 117565761 117565854 -66722808 + L2 LINE L2 3168 3262 -10 250 188 0 0 chr4 117567825 117567889 -66720773 + L1MC4 LINE L1 6640 6703 -1339 924 57 66 0 chr4 117567947 117568093 -66720569 + AluSg/x SINE Alu 157 310 0 25 0 0 0 chr4 117568309 117568334 -66720328 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr4 117569610 117569631 -66719031 + AT_rich Low_complexity Low_complexity 1 21 0 385 219 88 18 chr4 117569821 117569935 -66718727 + Charlie4 DNA MER1_type 1840 1961 0 260 333 13 0 chr4 117570133 117570211 -66718451 - L2 LINE L2 -8 3264 3186 2083 128 0 3 chr4 117570216 117570513 -66718149 + AluSx SINE Alu 1 296 -16 804 252 185 54 chr4 117571614 117572388 -66716274 - L2 LINE L2 -5 3308 2337 1808 169 121 12 chr4 117573275 117573696 -66714966 - MLT1C LTR MaLR 0 467 1 211 225 0 0 chr4 117574016 117574056 -66714606 + T-rich Low_complexity Low_complexity 5 44 0 26 30 0 0 chr4 117574083 117574116 -66714546 + AT_rich Low_complexity Low_complexity 1 33 0 27 49 0 0 chr4 117574368 117574409 -66714253 + AT_rich Low_complexity Low_complexity 1 41 0 1955 162 54 46 chr4 117574823 117575304 -66713358 - MER31A LTR ERV1 0 485 1 948 175 0 0 chr4 117575409 117575563 -66713099 + FRAM SINE Alu 4 157 -9 539 271 97 82 chr4 117575583 117576010 -66712652 - LTR33A LTR ERVL -57 464 7 384 273 40 11 chr4 117576066 117576242 -66712420 - HAL1 LINE L1 -86 2421 2241 3560 134 47 20 chr4 117576292 117576947 -66711715 - L1MA4 LINE L1 -7 6293 5621 23 33 0 0 chr4 117577010 117577040 -66711622 + AT_rich Low_complexity Low_complexity 1 30 0 241 159 0 43 chr4 117577186 117577255 -66711407 - Charlie2 DNA MER1_type -559 2303 2238 1215 264 39 15 chr4 117577281 117577614 -66711048 - Charlie2 DNA MER1_type -2441 341 1 296 293 0 12 chr4 117577993 117578075 -66710587 + MER112 DNA MER1_type 2 82 -178 2193 127 0 0 chr4 117578109 117578416 -66710246 - AluSg SINE Alu -3 307 1 358 293 75 17 chr4 117578685 117578859 -66709803 + L1MEc LINE L1 305 488 -5908 3301 236 78 64 chr4 117578863 117579583 -66709079 + L1M4 LINE L1 2908 3616 -2530 2374 62 23 7 chr4 117579583 117579889 -66708773 + AluY SINE Alu 1 311 0 3301 236 78 64 chr4 117579889 117580657 -66708005 + L1M4 LINE L1 3616 4417 -1729 1176 88 0 0 chr4 117580958 117581105 -66707557 - AluSc SINE Alu -14 295 149 865 197 7 7 chr4 117581197 117581349 -66707313 + FRAM SINE Alu 4 155 -21 1750 150 4 0 chr4 117581541 117581808 -66706854 - AluSx SINE Alu -44 268 1 275 325 193 51 chr4 117581859 117582268 -66706394 - L2 LINE L2 0 3272 2806 217 368 90 18 chr4 117582321 117582544 -66706118 - L2 LINE L2 -654 2660 2422 749 187 0 22 chr4 117582688 117582822 -66705840 - FLAM_A SINE Alu -2 131 1 25 0 0 0 chr4 117583061 117583086 -66705576 + AT_rich Low_complexity Low_complexity 1 25 0 194 281 47 0 chr4 117584904 117584968 -66703694 + L2 LINE L2 2992 3058 -214 5250 166 14 8 chr4 117585234 117586124 -66702538 + MER54A LTR ERVL 3 897 -4 273 291 118 54 chr4 117586226 117586429 -66702233 - L1ME LINE L1 -459 5645 5430 2747 176 50 17 chr4 117586459 117586998 -66701664 - MER68 LTR ERV1 0 562 6 2231 167 23 37 chr4 117587005 117587491 -66701171 - L1MB7 LINE L1 0 6184 5706 274 299 99 55 chr4 117587554 117587976 -66700686 - L1ME LINE L1 -2324 3805 3365 478 300 130 40 chr4 117588271 117588548 -66700114 - L1ME LINE L1 -4878 1241 940 439 239 210 7 chr4 117589674 117589812 -66698850 + MER8 DNA MER2_type 1 166 -73 357 191 16 0 chr4 117589800 117589863 -66698799 + MER2 DNA MER2_type 282 345 0 * 314 285 23 62 chr4 117589875 117590023 -66698639 - MIR SINE MIR -62 146 38 1582 185 10 32 chr4 117590161 117590475 -66698187 - AluJo SINE Alu -5 307 1 650 304 86 43 chr4 117590476 117590906 -66697756 + L2 LINE L2 2760 3207 -106 8060 110 64 7 chr4 117590994 117592267 -66696395 - Tigger1 DNA MER2_type 0 2418 1074 31 0 0 0 chr4 117592433 117592464 -66696198 + AT_rich Low_complexity Low_complexity 1 31 0 621 72 36 0 chr4 117592467 117592550 -66696112 - Tigger1 DNA MER2_type -1332 1086 1001 5645 160 29 19 chr4 117592590 117593598 -66695064 - Tigger1 DNA MER2_type -1400 1018 1 24 67 0 0 chr4 117593939 117593984 -66694678 + AT_rich Low_complexity Low_complexity 1 45 0 3570 242 115 19 chr4 117596190 117597552 -66691110 - L1MEc LINE L1 -4580 1816 324 551 233 67 22 chr4 117597571 117597794 -66690868 - Charlie2a DNA MER1_type -1268 1594 1362 1122 226 55 32 chr4 117597892 117598115 -66690547 - Charlie2a DNA MER1_type -1669 1193 977 2029 149 3 0 chr4 117598115 117598424 -66690238 + AluSq SINE Alu 3 312 -1 1122 226 55 32 chr4 117598424 117598633 -66690029 - Charlie2a DNA MER1_type -1885 977 751 680 266 95 21 chr4 117598766 117599007 -66689655 - MIR SINE MIR -2 260 2 358 325 56 16 chr4 117599406 117599532 -66689130 - MIR SINE MIR 0 262 132 1240 228 161 40 chr4 117600584 117601014 -66687648 - L2 LINE L2 -2 3311 2830 1003 229 159 44 chr4 117601028 117601508 -66687154 + MLT1G1 LTR MaLR 2 590 0 553 278 25 56 chr4 117601508 117601706 -66686956 - L2 LINE L2 -492 2822 2631 1018 261 83 74 chr4 117602158 117602603 -66686059 + L2 LINE L2 2865 3313 0 26 50 0 0 chr4 117602770 117602810 -66685852 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr4 117602856 117602877 -66685785 + AT_rich Low_complexity Low_complexity 1 21 0 280 159 0 0 chr4 117603136 117603180 -66685482 - MER46A DNA MER2_type 0 236 193 280 159 0 0 chr4 117603340 117603384 -66685278 - MER46A DNA MER2_type 0 236 193 2465 73 0 0 chr4 117604547 117604850 -66683812 - AluY SINE Alu -8 303 1 5268 65 4 0 chr4 117605794 117606476 -66682186 - L1PA7 LINE L1 0 6154 5470 27178 111 13 27 chr4 117606477 117610764 -66677898 - L1P LINE L1 -1905 4241 15 23 54 0 0 chr4 117611629 117611666 -66676996 + AT_rich Low_complexity Low_complexity 1 37 0 2055 123 7 0 chr4 117612046 117612348 -66676314 + AluSx SINE Alu 1 304 -8 269 280 333 11 chr4 117612941 117613130 -66675532 - MIR SINE MIR -12 250 1 866 125 0 0 chr4 117613392 117613512 -66675150 - THE1B LTR MaLR -1 363 244 2134 131 0 0 chr4 117613695 117613992 -66674670 + AluSx SINE Alu 1 297 -15 23 0 0 0 chr4 117614732 117614755 -66673907 + AT_rich Low_complexity Low_complexity 1 23 0 2145 119 3 7 chr4 117615647 117615957 -66672705 - AluSx SINE Alu -3 309 1 2416 162 30 14 chr4 117617023 117617450 -66671212 - Tigger2a DNA MER2_type 0 434 1 314 297 155 13 chr4 117617499 117617654 -66671008 - MER5B DNA MER1_type -1 177 1 405 267 142 55 chr4 117617830 117617987 -66670675 + L1MEc LINE L1 529 671 -5725 2125 105 17 0 chr4 117617987 117618281 -66670381 + AluSc SINE Alu 1 299 -10 405 267 142 55 chr4 117618281 117618468 -66670194 + L1MEc LINE L1 671 903 -5493 2543 203 185 14 chr4 117618511 117619445 -66669217 + L1ME1 LINE L1 5086 6161 -5 1317 138 10 0 chr4 117619672 117619902 -66668760 + AluSg/x SINE Alu 87 318 0 2300 208 141 37 chr4 117620073 117621265 -66667397 - L1ME3 LINE L1 -3 6159 4837 24 53 0 0 chr4 117621315 117621353 -66667309 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr4 117621415 117621436 -66667226 + AT_rich Low_complexity Low_complexity 1 21 0 2717 22 0 12 chr4 117622083 117622402 -66666260 + AluYb8 SINE Alu 1 315 -3 582 252 26 26 chr4 117623411 117623566 -66665096 + MIR SINE MIR 6 160 -102 22 80 0 0 chr4 117623787 117623837 -66664825 + AT_rich Low_complexity Low_complexity 1 50 0 263 164 45 8 chr4 117624133 117624267 -66664395 + (TA)n Simple_repeat Simple_repeat 1 139 0 27 49 0 0 chr4 117624268 117624309 -66664353 + AT_rich Low_complexity Low_complexity 1 41 0 1476 177 8 12 chr4 117624323 117624577 -66664085 - AluJo SINE Alu -41 271 19 27 0 0 0 chr4 117624586 117624613 -66664049 + AT_rich Low_complexity Low_complexity 1 27 0 637 259 68 30 chr4 117624952 117625232 -66663430 - L1ME LINE L1 -422 5699 5392 1844 119 45 0 chr4 117626728 117626996 -66661666 - AluSx SINE Alu -30 282 3 1557 184 3 30 chr4 117627322 117627627 -66661035 + AluJo SINE Alu 1 297 -15 356 245 217 14 chr4 117627726 117627869 -66660793 + MIR SINE MIR 91 262 0 22 0 0 0 chr4 117628101 117628123 -66660539 + AT_rich Low_complexity Low_complexity 1 22 0 42645 33 21 3 chr4 117628337 117634424 -66654238 - L1PA2 LINE L1 0 6155 1 634 317 100 14 chr4 117634958 117635327 -66653335 - MLT1I LTR MaLR -8 401 1 4049 160 12 0 chr4 117636102 117636790 -66651872 - L1MB3 LINE L1 -9 6174 5479 233 362 158 34 chr4 117637529 117638526 -66650136 - L2 LINE L2 -349 2965 1846 366 164 55 0 chr4 117638526 117638599 -66650063 + L1MC4 LINE L1 7826 7902 -140 742 76 19 0 chr4 117638980 117639085 -66649577 + L1MB4 LINE L1 6074 6180 0 1795 151 72 50 chr4 117642333 117642582 -66646080 - Charlie1a DNA MER1_type -1695 1066 803 2343 88 0 3 chr4 117642582 117642888 -66645774 + AluSp SINE Alu 1 305 -8 1795 151 72 50 chr4 117642888 117643042 -66645620 - Charlie1a DNA MER1_type -1958 803 654 * 1837 189 85 12 chr4 117643032 117643434 -66645228 - Charlie1a DNA MER1_type -1024 431 1 461 278 225 0 chr4 117644327 117644536 -66644126 + MIR SINE MIR 2 257 -5 352 269 81 67 chr4 117644585 117644734 -66643928 - MIR SINE MIR -66 196 46 315 248 234 15 chr4 117645340 117645477 -66643185 - MIR SINE MIR -17 245 79 552 216 29 0 chr4 117645671 117645773 -66642889 + FLAM_A SINE Alu 5 109 -33 27 62 0 0 chr4 117645775 117645823 -66642839 + AT_rich Low_complexity Low_complexity 1 48 0 220 211 0 0 chr4 117647353 117647391 -66641271 + (TATATG)n Simple_repeat Simple_repeat 3 40 0 1215 174 119 0 chr4 117649620 117649873 -66638789 - MER58B DNA MER1_type -1 340 58 2526 166 104 8 chr4 117650309 117650778 -66637884 - MLT2B1 LTR ERVL -6 514 1 675 198 68 52 chr4 117652370 117652562 -66636100 + MIR SINE MIR 68 262 0 437 143 7 162 chr4 117653198 117653254 -66635408 - L1MB8 LINE L1 0 6178 6115 1589 168 22 4 chr4 117653254 117653522 -66635140 + AluJb SINE Alu 1 273 -39 437 143 7 162 chr4 117653522 117653619 -66635043 - L1MB8 LINE L1 -63 6115 6049 2303 160 39 30 chr4 117653627 117654121 -66634541 - L1ME1 LINE L1 -298 5868 5371 2183 60 0 11 chr4 117654264 117654529 -66634133 + AluY SINE Alu 35 296 -15 1572 165 9 50 chr4 117654535 117654856 -66633806 + AluJo SINE Alu 1 308 -4 243 0 0 0 chr4 117654966 117654993 -66633669 + (T)n Simple_repeat Simple_repeat 1 27 0 597 256 40 17 chr4 117655336 117655512 -66633150 + MIR3 SINE MIR 19 198 -10 672 208 130 0 chr4 117655638 117655792 -66632870 + MER45A DNA AcHobo 4 177 -1 234 283 33 65 chr4 117657277 117657369 -66631293 + L2 LINE L2 3132 3220 -52 2875 155 45 43 chr4 117657932 117658695 -66629967 - L1MB4 LINE L1 -303 6375 5611 * 4554 228 90 15 chr4 117658693 117658975 -66629687 - L1MB4 LINE L1 -2113 4531 4272 2004 138 0 26 chr4 117658975 117659286 -66629376 - AluSg SINE Alu -7 303 1 4554 228 90 15 chr4 117659286 117659335 -66629327 - L1MB4 LINE L1 -2372 4272 4228 2906 133 21 0 chr4 117659335 117659817 -66628845 - L1MB2 LINE L1 -1 6170 5679 4554 228 90 15 chr4 117659817 117660936 -66627726 - L1MB4 LINE L1 -2416 4228 2971 426 241 35 21 chr4 117660930 117661071 -66627591 - L1MB4 LINE L1 -6386 156 14 * 213 39 0 0 chr4 117661125 117661151 -66627511 + (CAA)n Simple_repeat Simple_repeat 2 27 0 318 211 116 11 chr4 117661469 117661564 -66627098 - L1ME4a LINE L1 -22 6099 5995 201 184 61 0 chr4 117662018 117662067 -66626595 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 201 289 19 0 chr4 117662254 117662306 -66626356 + L2 LINE L2 3211 3263 -9 1832 129 13 46 chr4 117663119 117663421 -66625241 - AluSx SINE Alu -20 292 1 438 124 268 21 chr4 117663556 117663653 -66625009 + L2 LINE L2 3193 3313 0 1006 158 7 0 chr4 117664763 117664915 -66623747 - AluJb SINE Alu -23 289 137 332 309 136 0 chr4 117665585 117665776 -66622886 - MIR SINE MIR -14 248 32 290 261 65 0 chr4 117665878 117665991 -66622671 + MIR SINE MIR 60 184 -24 2059 42 0 81 chr4 117666821 117667104 -66621558 + AluSx SINE Alu 22 281 -31 262 245 133 10 chr4 117667359 117667457 -66621205 - MIR SINE MIR -68 194 85 580 171 0 0 chr4 117668129 117668217 -66620445 - AluJ/FLAM SINE Alu -222 90 3 2335 89 0 3 chr4 117668907 117669211 -66619451 - AluSx SINE Alu -7 305 3 1714 167 30 0 chr4 117669281 117669551 -66619111 + AluJb SINE Alu 2 279 -33 333 312 89 13 chr4 117669707 117669864 -66618798 + L2 LINE L2 2866 3034 -238 1032 181 5 48 chr4 117670253 117670463 -66618199 - AluJo SINE Alu -22 290 90 366 258 103 0 chr4 117670993 117671090 -66617572 - MIR3 SINE MIR -15 193 87 454 272 98 67 chr4 117671572 117672142 -66616520 + L2 LINE L2 2650 3220 -52 667 151 79 151 chr4 117672592 117672721 -66615941 - MER33 DNA MER1_type -2261 324 226 784 161 0 0 chr4 117672721 117672839 -66615823 - FLAM_C SINE Alu -15 118 1 667 151 79 151 chr4 117672839 117673000 -66615662 - MER33 DNA MER1_type -2359 226 55 603 284 149 0 chr4 117673848 117674063 -66614599 - MIR SINE MIR -5 257 11 452 206 9 0 chr4 117674253 117674360 -66614302 + L1MB8 LINE L1 6066 6173 -5 2007 283 118 29 chr4 117674527 117675556 -66613106 - L2 LINE L2 0 3313 2192 1182 112 31 0 chr4 117675706 117675867 -66612795 - AluSx SINE Alu -124 188 23 719 357 101 23 chr4 117675884 117676127 -66612535 - L2 LINE L2 -1047 2267 2044 204 40 0 0 chr4 117676127 117676152 -66612510 + (GAA)n Simple_repeat Simple_repeat 2 26 0 719 357 101 23 chr4 117676152 117676522 -66612140 - L2 LINE L2 -1270 2044 1606 2522 113 68 0 chr4 117676670 117677070 -66611592 + MSTA LTR MaLR 1 427 -1 547 362 60 35 chr4 117677512 117677976 -66610686 - L2 LINE L2 -2418 896 421 192 257 92 101 chr4 117678939 117679048 -66609614 - L2 LINE L2 -465 2849 2742 457 259 18 72 chr4 117680072 117680238 -66608424 - MIR SINE MIR -102 160 4 18229 33 2 0 chr4 117680409 117683192 -66605470 + L1PA2 LINE L1 3156 5943 -212 255 141 0 47 chr4 117683294 117683358 -66605304 + L1 LINE L1 5170 5230 -916 836 193 25 10 chr4 117683364 117683561 -66605101 + L1MB4 LINE L1 5979 6178 -2 684 149 26 0 chr4 117683770 117683884 -66604778 - AluJb SINE Alu -195 117 1 906 170 52 0 chr4 117685093 117685246 -66603416 - AluJb SINE Alu -15 297 137 284 286 181 0 chr4 117685337 117685442 -66603220 + L2 LINE L2 2952 3075 -238 322 304 174 25 chr4 117685602 117685803 -66602859 - MIR SINE MIR -18 244 14 375 250 0 11 chr4 117685904 117685992 -66602670 + L2 LINE L2 2896 2982 -331 1291 241 0 32 chr4 117686014 117686329 -66602333 - L2 LINE L2 -477 2837 2533 256 172 46 185 chr4 117686342 117686580 -66602082 - L1MC5 LINE L1 -31 7930 7726 206 253 101 51 chr4 117687248 117687327 -66601335 + MIR SINE MIR 82 164 -98 1456 126 39 31 chr4 117687475 117687729 -66600933 - L1PB4 LINE L1 -6 6150 5895 240 269 0 15 chr4 117687803 117687870 -66600792 + MIR SINE MIR 196 261 -1 252 333 98 40 chr4 117688142 117688316 -66600346 + MER5A DNA MER1_type 6 189 0 252 292 80 7 chr4 117688418 117688555 -66600107 + L1ME4a LINE L1 5964 6110 -11 1466 167 0 54 chr4 117688669 117688927 -66599735 + AluJo SINE Alu 39 282 -30 26 30 0 0 chr4 117689402 117689435 -66599227 + AT_rich Low_complexity Low_complexity 1 33 0 288 0 0 0 chr4 117689862 117689894 -66598768 + (TAA)n Simple_repeat Simple_repeat 3 34 0 697 295 120 0 chr4 117689896 117690113 -66598549 - MIR SINE MIR -12 250 8 205 320 82 21 chr4 117691281 117691378 -66597284 - MIR3 SINE MIR -5 203 101 30 59 0 0 chr4 117693461 117693512 -66595150 + AT_rich Low_complexity Low_complexity 1 51 0 204 156 0 0 chr4 117693618 117693632 -66595030 + A-rich Low_complexity Low_complexity 1 14 -31 2690 26 0 6 chr4 117693632 117693945 -66594717 + AluY SINE Alu 1 311 0 204 156 0 0 chr4 117693945 117693975 -66594687 + A-rich Low_complexity Low_complexity 13 45 0 1443 179 7 58 chr4 117693980 117694288 -66594374 + AluJo SINE Alu 2 293 -19 3146 37 0 0 chr4 117694482 117694859 -66593803 - L1PA4 LINE L1 -2 6153 5777 1936 125 4 0 chr4 117745147 117745428 -66543234 + AluSg SINE Alu 1 282 -28 2038 96 11 0 chr4 117746238 117746520 -66542142 - AluSp SINE Alu -26 287 3 272 129 161 0 chr4 117746939 117747001 -66541661 + AluJb SINE Alu 46 117 -185 402 219 0 21 chr4 117747060 117747156 -66541506 + FRAM SINE Alu 65 158 -18 963 61 0 30 chr4 117747216 117747347 -66541315 + AluJo SINE Alu 23 149 -163 612 162 7 88 chr4 117747369 117747505 -66541157 - FLAM_C SINE Alu -4 129 5 1883 106 11 0 chr4 117747545 117747818 -66540844 + AluSx SINE Alu 2 277 -35 890 234 0 5 chr4 117747823 117748028 -66540634 + AluJo SINE Alu 78 281 -31 183 42 0 0 chr4 117748028 117748052 -66540610 + (CTAG)n Simple_repeat Simple_repeat 1 24 0 196 233 82 68 chr4 117748588 117748661 -66540001 + MIR SINE MIR 105 178 -84 2011 110 7 3 chr4 117748888 117749178 -66539484 - AluSx SINE Alu -21 291 1 2307 117 0 13 chr4 117749392 117749571 -66539091 - AluSx SINE Alu 0 312 137 2205 123 3 0 chr4 117749571 117749872 -66538790 - AluSp SINE Alu -11 302 1 2307 117 0 13 chr4 117749872 117750008 -66538654 - AluSx SINE Alu -175 137 1 1690 80 0 0 chr4 117751285 117751498 -66537164 + AluSg/x SINE Alu 84 296 -13 1336 146 53 56 chr4 117752186 117752488 -66536174 + AluSx SINE Alu 1 301 -11 1322 220 178 2 chr4 117752616 117753044 -66535618 + MLT1D LTR MaLR 1 503 -2 2150 128 0 3 chr4 117753075 117753381 -66535281 + AluSx SINE Alu 1 305 -7 1921 158 10 0 chr4 117753558 117753856 -66534806 - AluSx SINE Alu -10 302 2 2046 116 13 3 chr4 117754645 117754946 -66533716 - AluSq SINE Alu -9 304 1 273 137 0 0 chr4 117755805 117755856 -66532806 - AluSp/q SINE Alu -2 301 251 197 239 30 15 chr4 117756126 117756193 -66532469 - MIR SINE MIR -56 152 85 266 250 16 0 chr4 117756542 117756606 -66532056 - MIR SINE MIR -177 85 21 24 32 0 0 chr4 117756919 117756950 -66531712 + AT_rich Low_complexity Low_complexity 1 31 0 592 326 48 10 chr4 117757093 117757384 -66531278 - ERVL LTR ERVL -606 5158 4857 456 349 67 0 chr4 117757568 117757880 -66530782 - ERVL LTR ERVL -993 4492 4232 1717 159 34 7 chr4 117758108 117758403 -66530259 - AluJo SINE Alu -9 303 1 454 250 147 29 chr4 117758672 117758876 -66529786 + MIR SINE MIR 5 232 -30 333 306 61 17 chr4 117759494 117759674 -66528988 - L1ME4a LINE L1 -8 6113 5926 318 323 10 10 chr4 117759739 117759835 -66528827 - L1ME4a LINE L1 -2001 5807 5712 776 220 112 14 chr4 117760925 117761148 -66527514 + MIR SINE MIR 10 254 -8 380 190 331 14 chr4 117762393 117762535 -66526127 - MER5A DNA MER1_type -1 188 2 235 408 0 0 chr4 117762673 117762776 -66525886 + MIR SINE MIR 110 212 -50 2762 146 51 9 chr4 117763153 117763687 -66524975 + L1MC1 LINE L1 5777 6332 -1 1851 193 63 62 chr4 117763743 117764247 -66524415 + MLT1D LTR MaLR 1 505 0 21818 138 8 20 chr4 117764268 117768636 -66520026 + L1P4 LINE L1 1422 5726 -442 600 318 87 31 chr4 117769816 117770266 -66518396 - L1MEd LINE L1 -5315 804 330 1070 220 99 7 chr4 117770319 117770601 -66518061 + MER65A LTR ERV1 1 308 -137 244 236 61 81 chr4 117770806 117770954 -66517708 + MER65A LTR ERV1 301 445 0 449 246 134 0 chr4 117770964 117771135 -66517527 - L1MEd LINE L1 -5855 264 71 383 330 218 10 chr4 117771250 117771456 -66517206 + L2 LINE L2 2922 3170 -102 3883 118 48 3 chr4 117772175 117772226 -66516436 - L1MA6 LINE L1 -10 6290 6243 212 0 36 0 chr4 117772226 117772254 -66516408 + (TA)n Simple_repeat Simple_repeat 1 29 0 3883 118 48 3 chr4 117772254 117772844 -66515818 - L1MA6 LINE L1 -57 6243 5620 856 212 0 6 chr4 117772871 117773036 -66515626 - FRAM SINE Alu -18 158 1 210 91 0 0 chr4 117773094 117773127 -66515535 + (GA)n Simple_repeat Simple_repeat 1 33 0 1362 167 139 0 chr4 117773379 117773637 -66515025 + AluJo SINE Alu 6 299 -13 221 309 12 25 chr4 117776125 117776206 -66512456 + L2 LINE L2 3173 3252 -20 219 238 0 27 chr4 117776874 117776955 -66511707 - MIR SINE MIR -63 145 68 324 259 56 49 chr4 117780330 117780421 -66508241 + L1ME4a LINE L1 5978 6072 -49 1820 149 0 47 chr4 117780421 117780742 -66507920 - AluSq SINE Alu -7 306 1 324 259 56 49 chr4 117780742 117780793 -66507869 + L1ME4a LINE L1 6072 6121 0 334 298 48 69 chr4 117781240 117781428 -66507234 + MIR3 SINE MIR 22 205 -3 216 125 0 0 chr4 117781849 117781881 -66506781 + L2 LINE L2 3269 3300 -13 1815 138 43 0 chr4 117782201 117782477 -66506185 - AluSx SINE Alu -17 295 8 225 321 37 25 chr4 117783565 117783646 -66505016 - MIR SINE MIR -178 84 3 593 202 54 23 chr4 117784427 117784556 -66504106 - MER46A DNA MER2_type -102 134 2 2752 182 18 12 chr4 117784759 117785319 -66503343 - L1PB4 LINE L1 0 6156 5594 415 342 164 11 chr4 117785879 117786239 -66502423 - L1M4 LINE L1 -991 5155 4741 22 35 0 0 chr4 117787185 117787214 -66501448 + AT_rich Low_complexity Low_complexity 1 29 0 456 265 129 105 chr4 117793224 117793681 -66494981 - L2 LINE L2 -673 2641 2174 182 306 35 35 chr4 117793689 117793774 -66494888 - MIR SINE MIR -16 246 162 243 311 20 20 chr4 117794156 117794307 -66494355 + LTR16C LTR ERVL 340 490 -1 180 241 155 0 chr4 117794347 117794405 -66494257 - MIR SINE MIR -142 120 54 617 345 58 24 chr4 117795252 117795632 -66493030 + L3 LINE CR1 1005 1397 -180 2282 126 22 22 chr4 117795632 117795996 -66492666 - THE1B LTR MaLR 0 364 1 5654 88 41 1 chr4 117795996 117796794 -66491868 - THE1B-int LTR MaLR 0 1580 751 836 79 0 24 chr4 117796803 117796929 -66491733 - THE1B-int LTR MaLR -1457 123 1 2318 121 19 22 chr4 117796929 117797294 -66491368 - THE1B LTR MaLR 0 364 1 221 393 14 21 chr4 117797309 117797454 -66491208 + L3 LINE CR1 1431 1574 -3 454 140 43 120 chr4 117797520 117797613 -66491049 + L1MB2 LINE L1 5987 6072 -99 2267 100 0 0 chr4 117797613 117797903 -66490759 - AluSq SINE Alu -23 290 1 454 140 43 120 chr4 117797903 117797971 -66490691 + L1MB2 LINE L1 6072 6144 -27 182 340 28 38 chr4 117798496 117798602 -66490060 - L2 LINE L2 -990 2324 2220 1837 163 25 25 chr4 117799194 117799598 -66489064 - L1MB2 LINE L1 -9 6162 5759 313 395 39 35 chr4 117800743 117800999 -66487663 - L1M2 LINE L1 -5599 1250 994 2166 107 0 7 chr4 117801354 117801652 -66487010 - AluSg SINE Alu -14 296 1 2499 141 64 19 chr4 117806681 117807101 -66481561 - MER1A DNA MER1_type -90 439 1 366 189 0 135 chr4 117807372 117807520 -66481142 - LTR41 LTR ERVL -6 767 640 1442 192 53 11 chr4 117807523 117807804 -66480858 + AluJb SINE Alu 1 293 -19 285 244 12 24 chr4 117807938 117808020 -66480642 + L1ME LINE L1 5483 5563 -558 461 225 7 78 chr4 117808020 117808162 -66480500 - AluJo SINE Alu -170 142 11 1637 176 0 17 chr4 117808400 117808701 -66479961 - AluJo SINE Alu -16 296 1 2193 75 3 20 chr4 117809294 117809589 -66479073 + AluSg SINE Alu 1 290 -20 565 220 0 9 chr4 117809641 117809750 -66478912 + AluSg/x SINE Alu 179 286 -23 1111 146 5 66 chr4 117809809 117810022 -66478640 + AluJb SINE Alu 1 200 -112 432 157 108 24 chr4 117810023 117810106 -66478556 - AluJ/FLAM SINE Alu -222 90 1 1280 180 54 101 chr4 117810216 117810532 -66478130 - AluJb SINE Alu 0 302 2 1082 104 26 7 chr4 117810573 117810727 -66477935 - AluSc SINE Alu -17 292 136 595 126 0 0 chr4 117810727 117810814 -66477848 + AluJo/FRAM SINE Alu 210 296 -16 889 216 79 0 chr4 117812257 117812447 -66476215 - MER3 DNA MER1_type -1 208 4 459 190 60 20 chr4 117812638 117812738 -66475924 - MER5A DNA MER1_type -82 107 4 1210 199 94 3 chr4 117812774 117813061 -66475601 + MER33 DNA MER1_type 12 324 0 216 0 0 0 chr4 117813349 117813373 -66475289 + (T)n Simple_repeat Simple_repeat 1 24 0 838 253 152 16 chr4 117813577 117813953 -66474709 - L1ME3 LINE L1 -90 6072 5646 221 241 98 98 chr4 117814864 117814997 -66473665 + MIR SINE MIR 51 183 -79 3222 58 2 13 chr4 117816925 117817318 -66471344 - L1PA6 LINE L1 -12 6142 5754 21 36 0 0 chr4 117817676 117817704 -66470958 + AT_rich Low_complexity Low_complexity 1 28 0 2299 92 3 0 chr4 117817887 117818182 -66470480 + AluSp SINE Alu 1 296 -17 905 188 139 40 chr4 117819364 117819492 -66469170 + AluJo SINE Alu 1 115 -197 2256 93 21 0 chr4 117819492 117819781 -66468881 + AluSq SINE Alu 1 295 -18 905 188 139 40 chr4 117819781 117819875 -66468787 + AluJo SINE Alu 115 245 -67 182 294 0 0 chr4 117820019 117820070 -66468592 + L3b LINE CR1 1530 1580 -3 415 245 377 4 chr4 117820704 117820969 -66467693 - L2 LINE L2 -17 3296 2933 246 260 203 16 chr4 117821211 117821334 -66467328 - MIR SINE MIR -66 196 51 261 313 88 16 chr4 117821518 117821710 -66466952 + L2 LINE L2 2295 2500 -814 316 339 28 0 chr4 117822586 117822695 -66465967 - MIR SINE MIR -75 133 22 29 28 0 0 chr4 117823372 117823408 -66465254 + AT_rich Low_complexity Low_complexity 1 36 0 201 351 119 13 chr4 117825218 117825369 -66463293 - L2 LINE L2 -595 2719 2553 261 220 68 0 chr4 117825896 117825955 -66462707 + MER91C DNA MER1_type 36 98 -42 548 231 21 75 chr4 117826602 117826697 -66461965 - MER96B DNA MER1_type? 0 417 335 2132 131 17 0 chr4 117826697 117826994 -66461668 - AluSx SINE Alu -10 302 1 548 231 21 75 chr4 117826994 117827084 -66461578 - MER96B DNA MER1_type? -82 335 242 300 53 0 0 chr4 117827358 117827396 -66461266 + (TCCA)n Simple_repeat Simple_repeat 4 41 0 548 275 15 117 chr4 117828962 117829235 -66459427 + LTR16C LTR ERVL 115 359 -132 936 245 29 12 chr4 117829661 117829906 -66458756 - MIR SINE MIR -3 259 11 24 0 0 0 chr4 117830619 117830643 -66458019 + AT_rich Low_complexity Low_complexity 1 24 0 2246 88 3 10 chr4 117831530 117831825 -66456837 - AluSg SINE Alu -17 293 1 213 121 0 0 chr4 117832492 117832525 -66456137 + (T)n Simple_repeat Simple_repeat 1 33 0 241 245 0 0 chr4 117833450 117833503 -66455159 - MIR SINE MIR -105 157 105 1291 132 99 5 chr4 117834783 117834996 -66453666 + MER46A DNA MER2_type 3 235 -1 499 304 196 0 chr4 117835995 117836209 -66452453 - MIR SINE MIR 0 262 7 21 0 0 0 chr4 117836278 117836299 -66452363 + AT_rich Low_complexity Low_complexity 1 21 0 301 294 175 12 chr4 117839054 117839214 -66449448 - MIR SINE MIR -76 186 1 270 200 0 118 chr4 117839214 117839296 -66449366 + MIR SINE MIR 119 190 -72 324 278 174 22 chr4 117840001 117840231 -66448431 + L2 LINE L2 2710 2974 -340 417 304 94 23 chr4 117841012 117841183 -66447479 - MIR SINE MIR -39 223 41 24 0 0 0 chr4 117843170 117843194 -66445468 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 117843281 117843302 -66445360 + AT_rich Low_complexity Low_complexity 1 21 0 366 246 154 15 chr4 117843486 117843616 -66445046 + MIR3 SINE MIR 51 198 -10 196 295 95 11 chr4 117844115 117844210 -66444452 + L2 LINE L2 2919 3021 -292 249 212 76 0 chr4 117844624 117844690 -66443972 + LTR67 LTR ERVL 486 556 -1 1301 135 22 0 chr4 117844790 117844975 -66443687 + MER5A DNA MER1_type 1 189 0 273 275 62 0 chr4 117845543 117845623 -66443039 + L2 LINE L2 3229 3313 0 2174 129 7 0 chr4 117846181 117846483 -66442179 - AluSx SINE Alu -8 304 1 449 270 132 26 chr4 117846684 117846836 -66441826 - MIR SINE MIR -90 172 5 195 114 0 0 chr4 117847077 117847112 -66441550 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 25 31 0 0 chr4 117848082 117848114 -66440548 + AT_rich Low_complexity Low_complexity 1 32 0 1000 182 98 14 chr4 117849134 117849348 -66439314 + MER1B DNA MER1_type 3 234 -63 516 145 0 12 chr4 117849448 117849531 -66439131 + AluJ/FRAM SINE Alu 217 298 -14 1390 198 8 4 chr4 117850131 117850399 -66438263 + AluJo SINE Alu 40 308 -4 293 222 153 5 chr4 117850453 117850642 -66438020 - Charlie1 DNA MER1_type -6 2755 2539 2100 122 0 7 chr4 117850685 117850979 -66437683 - AluSx SINE Alu -16 296 5 1360 215 10 10 chr4 117851137 117851435 -66437227 - AluJo SINE Alu -14 298 1 629 224 0 0 chr4 117851459 117851575 -66437087 - FLAM_C SINE Alu -19 124 9 1164 232 90 73 chr4 117851681 117852322 -66436340 + L2 LINE L2 2458 3100 -213 1693 178 23 13 chr4 117852323 117852497 -66436165 - AluJo SINE Alu 0 312 132 2196 99 0 14 chr4 117852497 117852820 -66435842 - AluSq SINE Alu 0 313 1 1693 178 23 13 chr4 117852820 117852954 -66435708 - AluJo SINE Alu -180 132 1 1550 173 25 74 chr4 117852963 117853316 -66435346 - MLT1D LTR MaLR -8 497 162 685 228 0 7 chr4 117853316 117853452 -66435210 + FLAM_C SINE Alu 2 136 -7 766 208 0 0 chr4 117853457 117853577 -66435085 + FLAM_A SINE Alu 1 120 -13 1110 174 3 118 chr4 117853577 117853865 -66434797 + AluJb SINE Alu 45 299 -13 335 268 0 0 chr4 117853865 117853936 -66434726 + MER21B LTR ERV1 16 86 -777 2571 239 50 37 chr4 117853962 117854369 -66434293 + MER21B LTR ERV1 19 419 -444 1559 189 3 49 chr4 117854369 117854676 -66433986 - AluJb SINE Alu -18 294 2 2571 239 50 37 chr4 117854676 117854746 -66433916 + MER21B LTR ERV1 419 487 -376 1448 200 38 3 chr4 117854746 117855036 -66433626 + AluJo SINE Alu 1 300 -12 2571 239 50 37 chr4 117855036 117855281 -66433381 + MER21B LTR ERV1 487 751 -112 295 351 36 0 chr4 117855444 117855555 -66433107 + MIR SINE MIR 73 187 -75 202 250 96 10 chr4 117855830 117855934 -66432728 + L2 LINE L2 2949 3061 -211 552 139 58 0 chr4 117856234 117856341 -66432321 - AluJb SINE Alu 0 305 194 729 226 0 0 chr4 117856375 117856499 -66432163 + FLAM_C SINE Alu 2 125 -18 2990 133 9 2 chr4 117856502 117856944 -66431718 - MER1A DNA MER1_type -29 500 56 1836 158 0 7 chr4 117857304 117857596 -66431066 + AluJb SINE Alu 5 294 -18 21 36 0 0 chr4 117857608 117857636 -66431026 + AT_rich Low_complexity Low_complexity 1 28 0 2340 88 3 0 chr4 117857636 117857932 -66430730 + AluSp SINE Alu 1 297 -16 1646 192 0 13 chr4 117858018 117858325 -66430337 + AluJb SINE Alu 1 303 -9 226 328 39 52 chr4 117858686 117858915 -66429747 + L2 LINE L2 2836 3061 -211 204 280 129 11 chr4 117858942 117859035 -66429627 + L2 LINE L2 3183 3286 -27 380 189 25 132 chr4 117859099 117859258 -66429404 + MLT1D LTR MaLR 72 213 -292 1374 238 0 14 chr4 117859259 117859553 -66429109 + AluJo SINE Alu 5 294 -18 1468 164 124 25 chr4 117859800 117860075 -66428587 + AluJo SINE Alu 1 302 0 649 200 0 127 chr4 117860088 117860190 -66428472 - AluJo SINE Alu -145 167 54 1790 146 22 7 chr4 117860190 117860465 -66428197 + AluSx SINE Alu 1 279 -33 279 104 0 0 chr4 117860465 117860513 -66428149 + (CAA)n Simple_repeat Simple_repeat 1 48 0 649 200 0 127 chr4 117860513 117860574 -66428088 - AluJo SINE Alu -256 56 24 500 164 8 102 chr4 117860632 117860663 -66427999 + L1M4 LINE L1 5473 5505 -661 1667 178 10 10 chr4 117860663 117860955 -66427707 + AluJb SINE Alu 1 292 -20 500 164 8 102 chr4 117860955 117861043 -66427619 + L1M4 LINE L1 5505 5589 -577 718 196 0 0 chr4 117861079 117861191 -66427471 - FLAM_A SINE Alu -30 112 1 2843 188 41 36 chr4 117861191 117861807 -66426855 + L1MB8 LINE L1 5555 6173 -5 1574 189 20 20 chr4 117861828 117862130 -66426532 + AluJo SINE Alu 1 302 -10 2148 136 0 3 chr4 117862432 117862740 -66425922 + AluSq SINE Alu 1 307 -6 338 245 11 11 chr4 117862951 117863045 -66425617 - LTR37A LTR ERV1 -93 333 240 1329 253 10 7 chr4 117863190 117863486 -66425176 - AluJo SINE Alu -4 298 2 22 0 0 0 chr4 117863486 117863508 -66425154 + AT_rich Low_complexity Low_complexity 1 22 0 765 211 0 0 chr4 117863508 117863641 -66425021 - FLAM_C SINE Alu 0 133 1 1400 263 78 30 chr4 117863740 117864349 -66424313 + L2 LINE L2 2458 3097 -216 1494 191 25 14 chr4 117864349 117864507 -66424155 - AluJo SINE Alu -17 295 131 2165 100 34 0 chr4 117864507 117864798 -66423864 - AluSg1 SINE Alu -8 301 1 1494 191 25 14 chr4 117864798 117864922 -66423740 - AluJo SINE Alu -181 131 10 1526 188 14 57 chr4 117864949 117865300 -66423362 - MLT1D LTR MaLR -8 497 162 1578 198 0 7 chr4 117865312 117865600 -66423062 + AluJo SINE Alu 14 299 -13 301 307 0 0 chr4 117865600 117865675 -66422987 + MER21B LTR ERV1 16 90 -773 2792 228 79 41 chr4 117865697 117865859 -66422803 + MER21B LTR ERV1 19 173 -690 1986 150 0 3 chr4 117865859 117866152 -66422510 - AluSq SINE Alu -21 292 1 2792 228 79 41 chr4 117866152 117866462 -66422200 + MER21B LTR ERV1 173 470 -393 1756 164 0 16 chr4 117866462 117866767 -66421895 + AluJo SINE Alu 1 300 -12 2792 228 79 41 chr4 117866767 117867051 -66421611 + MER21B LTR ERV1 470 805 -58 7504 111 20 17 chr4 117867068 117868136 -66420526 + MER11C LTR ERVK 1 1071 0 255 278 124 65 chr4 117868191 117868360 -66420302 + MIR SINE MIR 9 187 -75 207 203 47 31 chr4 117868590 117868654 -66420008 + (CACCC)n Simple_repeat Simple_repeat 1 65 0 216 0 0 0 chr4 117868891 117868915 -66419747 + (A)n Simple_repeat Simple_repeat 1 24 0 715 200 0 0 chr4 117869040 117869160 -66419502 - AluJb SINE Alu -8 304 185 1309 229 7 26 chr4 117869162 117869464 -66419198 - AluJo SINE Alu -16 296 1 385 263 14 28 chr4 117869501 117869658 -66419004 + L1MC3 LINE L1 5723 5877 -1931 32 26 0 0 chr4 117869764 117869803 -66418859 + AT_rich Low_complexity Low_complexity 1 39 0 1444 204 29 29 chr4 117869873 117870182 -66418480 + AluJo SINE Alu 3 311 -1 2176 109 7 0 chr4 117870229 117870523 -66418139 + AluSg SINE Alu 1 296 -14 373 257 23 108 chr4 117870593 117870682 -66417980 + L1MC4 LINE L1 5495 5590 -2218 578 154 65 65 chr4 117870682 117870805 -66417857 - FLAM_C SINE Alu -7 126 4 373 257 23 108 chr4 117870805 117870929 -66417733 + L1MC4 LINE L1 5590 5690 -2118 633 175 29 0 chr4 117870971 117871074 -66417588 - U6 snRNA snRNA 0 107 2 543 193 0 64 chr4 117871294 117871403 -66417259 + MER8 DNA MER2_type 4 105 -134 1053 138 0 0 chr4 117871414 117871559 -66417103 + AluJb SINE Alu 130 274 -38 1649 197 0 0 chr4 117871980 117872264 -66416398 + AluJb SINE Alu 1 284 -28 237 33 0 0 chr4 117872265 117872295 -66416367 + (CA)n Simple_repeat Simple_repeat 2 31 0 1901 71 0 0 chr4 117872617 117872841 -66415821 + AluSq SINE Alu 3 226 -87 889 196 45 123 chr4 117874557 117874889 -66413773 + L1MC4 LINE L1 6718 7069 -938 365 194 0 0 chr4 117875374 117875441 -66413221 - MSTD LTR MaLR 0 396 330 615 179 11 28 chr4 117875441 117875620 -66413042 + GA-rich Low_complexity Low_complexity 4 179 0 1542 188 88 19 chr4 117875644 117875963 -66412699 - MSTD LTR MaLR -55 341 1 2057 135 10 3 chr4 117877096 117877407 -66411255 + AluSq SINE Alu 1 313 0 2082 125 7 10 chr4 117877622 117877925 -66410737 + AluSq SINE Alu 1 302 -11 1692 174 4 4 chr4 117878240 117878552 -66410110 + AluSx SINE Alu 7 318 0 1104 167 104 5 chr4 117879500 117879882 -66408780 - LTR22 LTR ERVK 0 509 1 22 56 0 0 chr4 117880268 117880304 -66408358 + AT_rich Low_complexity Low_complexity 1 36 0 423 274 78 57 chr4 117881220 117881450 -66407212 + MIR SINE MIR 28 262 0 306 315 147 29 chr4 117881640 117882231 -66406431 + L2 LINE L2 1698 2358 -956 196 281 18 0 chr4 117882406 117882463 -66406199 + L2 LINE L2 2408 2465 -849 252 297 63 27 chr4 117884250 117884361 -66404301 - MIR SINE MIR -68 140 26 943 212 25 46 chr4 117884437 117884678 -66403984 + MER46A DNA MER2_type 1 236 0 23 33 0 0 chr4 117884911 117884941 -66403721 + AT_rich Low_complexity Low_complexity 1 30 0 541 182 37 122 chr4 117885632 117885846 -66402816 + L1MC5 LINE L1 7729 7924 -37 208 232 20 0 chr4 117885938 117886037 -66402625 + (TA)n Simple_repeat Simple_repeat 1 101 0 432 304 6 31 chr4 117886450 117886608 -66402054 + MER5A DNA MER1_type 1 160 -27 227 322 0 58 chr4 117886882 117887003 -66401659 + MIR SINE MIR 78 191 -71 465 19 0 0 chr4 117887678 117887732 -66400930 + (CA)n Simple_repeat Simple_repeat 2 55 0 566 314 47 24 chr4 117888078 117888333 -66400329 - MIR SINE MIR -1 261 1 321 332 140 34 chr4 117888363 117888685 -66399977 + L2 LINE L2 2916 3271 -1 186 43 0 0 chr4 117889666 117889689 -66398973 + (CAA)n Simple_repeat Simple_repeat 2 24 0 25 0 0 0 chr4 117891055 117891080 -66397582 + AT_rich Low_complexity Low_complexity 1 25 0 457 311 117 60 chr4 117891452 117891993 -66396669 - L1M4 LINE L1 -3059 3087 2489 2635 46 0 0 chr4 117891993 117892297 -66396365 - AluY SINE Alu -7 304 1 457 311 117 60 chr4 117892297 117892516 -66396146 - L1M4 LINE L1 -3657 2489 2284 183 276 35 0 chr4 117894329 117894387 -66394275 - L3 LINE CR1 0 1577 1518 429 202 164 0 chr4 117896034 117896138 -66392524 + L2 LINE L2 3193 3313 0 27 49 0 0 chr4 117896824 117896865 -66391797 + AT_rich Low_complexity Low_complexity 1 41 0 1076 150 98 16 chr4 117898716 117898909 -66389753 - MER2 DNA MER2_type -134 211 3 233 243 0 14 chr4 117899552 117899622 -66389040 + (TTA)n Simple_repeat Simple_repeat 2 70 0 1616 230 77 49 chr4 117900065 117900557 -66388105 + MLT1J LTR MaLR 5 510 -1 183 129 0 0 chr4 117900720 117900751 -66387911 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1299 298 44 13 chr4 117900924 117901374 -66387288 + LTR16B LTR ERVL 1 464 0 507 223 217 6 chr4 117901554 117901711 -66386951 - MIR SINE MIR 0 262 73 25 0 0 0 chr4 117902594 117902619 -66386043 + AT_rich Low_complexity Low_complexity 1 25 0 1959 14 0 5 chr4 117902662 117902883 -66385779 + AluYa5 SINE Alu 82 301 -10 26 0 0 0 chr4 117903563 117903589 -66385073 + AT_rich Low_complexity Low_complexity 1 26 0 1768 169 0 29 chr4 117904789 117905096 -66383566 + AluSx SINE Alu 6 303 -9 564 278 176 5 chr4 117907088 117907304 -66381358 + MIR SINE MIR 1 253 -9 307 317 10 30 chr4 117907462 117907563 -66381099 - L2 LINE L2 -232 3040 2942 282 272 41 59 chr4 117907817 117907986 -66380676 + HAL1 LINE L1 1212 1377 -1130 27 62 0 0 chr4 117908050 117908098 -66380564 + AT_rich Low_complexity Low_complexity 1 48 0 801 221 183 25 chr4 117908160 117908477 -66380185 + HAL1 LINE L1 1515 1881 -626 252 99 50 79 chr4 117909864 117909965 -66378697 + (TTAA)n Simple_repeat Simple_repeat 2 99 0 195 191 71 0 chr4 117912403 117912445 -66376217 - L2 LINE L2 0 3313 3269 1526 151 21 42 chr4 117912978 117913263 -66375399 - AluJo SINE Alu -10 302 24 458 191 5 10 chr4 117913263 117913464 -66375198 + L1MA4A LINE L1 6042 6302 -1 365 164 147 78 chr4 117914089 117914205 -66374457 - L2 LINE L2 0 3313 3190 213 322 0 0 chr4 117914243 117914302 -66374360 - MIR SINE MIR -59 149 91 2052 201 57 22 chr4 117914357 117914845 -66373817 + MLT1D LTR MaLR 1 505 0 196 326 67 82 chr4 117914977 117915112 -66373550 + L2 LINE L2 2656 2788 -526 24 0 0 0 chr4 117915707 117915731 -66372931 + AT_rich Low_complexity Low_complexity 1 24 0 590 197 70 35 chr4 117915801 117915943 -66372719 - MER5A DNA MER1_type -42 147 1 22 56 0 0 chr4 117915982 117916018 -66372644 + AT_rich Low_complexity Low_complexity 1 36 0 287 303 90 0 chr4 117916212 117916334 -66372328 - L1MC/D LINE L1 -1964 5844 5712 683 292 8 35 chr4 117916395 117916658 -66372004 - L1MC/D LINE L1 -590 5574 5319 282 289 178 7 chr4 117917084 117917219 -66371443 - MIR SINE MIR -24 238 81 2366 79 0 3 chr4 117917315 117917618 -66371044 - AluSg SINE Alu -8 302 1 323 182 35 13 chr4 117917946 117918085 -66370577 + L1ME2 LINE L1 5931 6123 -41 * 33702 36 1 0 chr4 117918077 117922986 -66365676 + L1PA4 LINE L1 1242 6154 -1 698 294 16 32 chr4 118025129 118025377 -66263285 + MIR SINE MIR 5 248 -14 270 116 0 0 chr4 118025504 118025547 -66263115 + (TC)n Simple_repeat Simple_repeat 1 43 0 398 209 104 43 chr4 118026057 118026172 -66262490 - L2 LINE L2 -3 3310 3189 331 330 84 21 chr4 118026761 118026952 -66261710 + MIR SINE MIR 22 224 -38 24 32 0 0 chr4 118027765 118027796 -66260866 + AT_rich Low_complexity Low_complexity 1 31 0 2122 171 13 5 chr4 118027883 118028268 -66260394 + MLT1B LTR MaLR 3 390 0 232 306 14 28 chr4 118029558 118029630 -66259032 + L2 LINE L2 3239 3309 -4 336 264 40 16 chr4 118029908 118030033 -66258629 - L1ME LINE L1 -462 5659 5532 221 208 0 38 chr4 118030176 118030229 -66258433 + CT-rich Low_complexity Low_complexity 4 54 0 231 194 181 14 chr4 118030851 118030923 -66257739 + LTR67 LTR ERVL 457 540 -17 2047 82 0 0 chr4 118031279 118031536 -66257126 - AluY SINE Alu -54 257 1 296 231 265 26 chr4 118031667 118031784 -66256878 + MIR SINE MIR 91 235 -27 413 267 53 111 chr4 118032767 118032992 -66255670 - MIR SINE MIR -50 212 1 572 245 147 13 chr4 118033975 118034289 -66254373 + L1M4 LINE L1 4840 5195 -951 1870 124 0 0 chr4 118034290 118034539 -66254123 + AluSx SINE Alu 1 249 -63 1557 260 23 5 chr4 118034561 118034946 -66253716 + MLT1E LTR MaLR 201 592 -1 23 68 0 0 chr4 118034961 118035005 -66253657 + AT_rich Low_complexity Low_complexity 1 44 0 302 206 14 0 chr4 118035143 118035216 -66253446 + CT-rich Low_complexity Low_complexity 4 77 0 257 294 37 64 chr4 118035444 118035553 -66253109 - L2 LINE L2 -199 3073 2968 248 260 120 0 chr4 118035633 118035733 -66252929 - L1ME4a LINE L1 -31 6090 5979 465 209 8 54 chr4 118035743 118035872 -66252790 - L1MA10 LINE L1 -1 6333 6211 501 352 45 6 chr4 118037468 118037647 -66251015 - MIR3 SINE MIR -7 201 16 2041 109 3 40 chr4 118038139 118038442 -66250220 + AluSq SINE Alu 1 292 -21 286 249 11 2 chr4 118039148 118039255 -66249407 - L1ME3A LINE L1 -244 5926 5821 352 264 52 52 chr4 118039255 118039448 -66249214 - L1ME4a LINE L1 -69 6052 5860 202 233 0 0 chr4 118039621 118039664 -66248998 + L2 LINE L2 3263 3305 -8 2177 110 0 0 chr4 118042618 118042900 -66245762 - AluSx SINE Alu -18 294 13 374 337 29 29 chr4 118044489 118044694 -66243968 + MER63A DNA MER1_type 1 205 -5 28 0 0 0 chr4 118045917 118045945 -66242717 + AT_rich Low_complexity Low_complexity 1 28 0 1265 68 0 0 chr4 118046123 118046285 -66242377 + L1PA8 LINE L1 6006 6167 -5 1165 199 123 15 chr4 118048324 118048585 -66240077 - AluJo SINE Alu -12 290 2 2462 73 0 0 chr4 118048726 118049029 -66239633 + AluY SINE Alu 1 303 -8 272 68 0 23 chr4 118049086 118049130 -66239532 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 618 90 210 0 chr4 118049283 118049383 -66239279 - Charlie3 DNA MER1_type -8 2702 2582 2035 203 100 44 chr4 118049667 118049697 -66238965 + LTR48B LTR ERV1 1 28 -616 2138 99 41 0 chr4 118049697 118049991 -66238671 + AluSx SINE Alu 3 308 -4 2035 203 100 44 chr4 118049991 118050570 -66238092 + LTR48B LTR ERV1 28 644 0 3643 144 61 11 chr4 118051048 118051687 -66236975 - LTR51 LTR ERV1 0 671 1 3819 151 94 1 chr4 118052027 118052678 -66235984 - MER50 LTR ERV1 -23 711 1 3039 165 47 5 chr4 118053211 118053782 -66234880 + LTR49 LTR ERV1 1 595 0 2044 205 84 87 chr4 118054848 118055541 -66233121 + LTR8 LTR ERV1 1 691 0 181 381 54 36 chr4 118055590 118055758 -66232904 + L2 LINE L2 2530 2700 -614 385 291 146 13 chr4 118055931 118056089 -66232573 + MIR SINE MIR 13 191 -71 2277 178 37 9 chr4 118056452 118056906 -66231756 + MLT1C LTR MaLR 1 467 0 917 215 53 19 chr4 118058166 118058375 -66230287 + MER58A DNA MER1_type 8 223 -1 540 213 168 7 chr4 118058391 118058546 -66230116 + MER5A DNA MER1_type 9 188 -1 1482 205 30 21 chr4 118058564 118058896 -66229766 - MER58B DNA MER1_type 0 341 7 1580 186 6 28 chr4 118059018 118059336 -66229326 - AluJo SINE Alu -1 311 1 2380 190 78 34 chr4 118059575 118060190 -66228472 + LTR48B LTR ERV1 3 644 0 422 236 28 44 chr4 118060739 118060921 -66227741 + (TA)n Simple_repeat Simple_repeat 1 179 0 399 85 0 0 chr4 118061167 118061226 -66227436 - Alu SINE Alu -4 298 240 327 244 33 44 chr4 118061242 118061332 -66227330 + MER58B DNA MER1_type 250 338 -3 586 223 159 6 chr4 118061350 118061507 -66227155 + MER5A DNA MER1_type 9 189 0 1287 196 54 0 chr4 118061515 118061791 -66226871 - MER58B DNA MER1_type 0 341 51 29 0 0 0 chr4 118061934 118061963 -66226699 + AT_rich Low_complexity Low_complexity 1 29 0 1758 187 3 0 chr4 118061963 118062252 -66226410 - AluJb SINE Alu -22 290 1 364 287 75 46 chr4 118062304 118062478 -66226184 - MLT1L LTR MaLR 0 615 437 13419 202 44 17 chr4 118062568 118065607 -66223055 - L1PB1 LINE L1 -1 6866 3696 2800 16 0 0 chr4 118065607 118065918 -66222744 - AluYa5 SINE Alu 0 311 1 13419 202 44 17 chr4 118065918 118067188 -66221474 - L1PB1 LINE L1 -3171 3696 2462 13037 115 21 35 chr4 118067290 118069037 -66219625 - L1PB1 LINE L1 -4791 2072 357 2252 118 3 3 chr4 118069037 118069350 -66219312 - AluSp SINE Alu 0 313 1 13037 115 21 35 chr4 118069350 118069701 -66218961 - L1PB1 LINE L1 -6506 357 3 401 232 203 58 chr4 118069731 118069972 -66218690 - MLT1L LTR MaLR -325 290 15 497 228 101 13 chr4 118070488 118070637 -66218025 - Charlie8 DNA MER1_type -2159 258 97 412 214 9 54 chr4 118070653 118070765 -66217897 + L1ME3A LINE L1 6059 6165 -5 2738 96 3 0 chr4 118070783 118071146 -66217516 - THE1B LTR MaLR 0 364 1 10407 104 43 20 chr4 118071146 118071594 -66217068 - THE1B-int LTR MaLR 0 1580 1144 2218 112 7 0 chr4 118071594 118071899 -66216763 - AluSg SINE Alu -3 307 1 10407 104 43 20 chr4 118071899 118072994 -66215668 - THE1B-int LTR MaLR -436 1144 1 2548 107 25 0 chr4 118072995 118073349 -66215313 - THE1B LTR MaLR -1 363 1 362 330 0 0 chr4 118076467 118076567 -66212095 - L2 LINE L2 -39 3233 3134 539 274 11 29 chr4 118076712 118076887 -66211775 + MER69A DNA AcHobo 2 173 -4 209 370 98 16 chr4 118076900 118077084 -66211578 - L2 LINE L2 -371 2943 2745 1042 148 29 19 chr4 118077108 118077317 -66211345 - L1MD2 LINE L1 -24 6404 6194 3049 179 22 13 chr4 118077321 118077760 -66210902 + MER44D DNA MER2_type 5 506 -1981 2349 145 3 6 chr4 118077760 118078125 -66210537 - THE1B LTR MaLR 0 364 1 3049 179 22 13 chr4 118078125 118078226 -66210436 + MER44D DNA MER2_type 506 605 0 649 264 25 0 chr4 118078226 118078385 -66210277 - L1MD2 LINE L1 -234 6194 6032 * 3870 237 1 5 chr4 118078383 118079346 -66209316 - L1 LINE L1 -2607 3539 2581 363 215 0 0 chr4 118079346 118079411 -66209251 - FRAM/FAM SINE Alu -102 64 1 3822 236 57 89 chr4 118079423 118081715 -66206947 - L1MEc LINE L1 -2167 4048 1868 2612 209 32 33 chr4 118081714 118082728 -66205934 - L1MD2 LINE L1 -538 5697 4694 * 985 306 51 25 chr4 118082731 118083382 -66205280 - L1MD2 LINE L1 -4756 1640 973 523 100 0 72 chr4 118083382 118083562 -66205100 + (TA)n Simple_repeat Simple_repeat 1 167 0 205 191 29 59 chr4 118083599 118083667 -66204995 + A-rich Low_complexity Low_complexity 2 67 0 1011 314 25 35 chr4 118083675 118084456 -66204206 - L1MD2 LINE L1 -5487 909 49 6969 47 32 0 chr4 118084509 118085562 -66203100 + L1PA7 LINE L1 5070 6154 0 689 190 95 0 chr4 118086915 118087052 -66201610 - MIR SINE MIR -32 230 81 194 328 31 0 chr4 118087059 118087123 -66201539 + MIR SINE MIR 88 153 -109 570 270 112 25 chr4 118087179 118087375 -66201287 + MIR SINE MIR 40 252 -10 733 253 104 10 chr4 118087386 118087694 -66200968 - MER46C DNA MER2_type -1 337 1 296 272 0 25 chr4 118087704 118087785 -66200877 + MIR SINE MIR 173 251 -11 603 291 55 0 chr4 118088112 118088277 -66200385 - MIR SINE MIR 0 262 89 790 196 30 104 chr4 118089317 118089547 -66199115 - AluJb SINE Alu -14 298 86 2271 111 3 0 chr4 118089618 118089915 -66198747 - AluSp SINE Alu -15 298 1 22 0 0 0 chr4 118089926 118089948 -66198714 + AT_rich Low_complexity Low_complexity 1 22 0 312 51 0 0 chr4 118090911 118090950 -66197712 - U2 snRNA snRNA -149 39 1 21 0 0 0 chr4 118091275 118091296 -66197366 + AT_rich Low_complexity Low_complexity 1 21 0 334 287 6 39 chr4 118092542 118092706 -66195956 + MER5B DNA MER1_type 1 171 -18 695 285 138 19 chr4 118093482 118093801 -66194861 - LTR18A LTR ERVL 0 357 1 458 333 76 40 chr4 118094062 118094459 -66194203 + L2 LINE L2 2360 2770 -544 222 37 0 0 chr4 118095160 118095187 -66193475 + (AATTG)n Simple_repeat Simple_repeat 4 30 0 30 45 0 0 chr4 118096439 118096483 -66192179 + AT_rich Low_complexity Low_complexity 1 44 0 2247 116 0 0 chr4 118096826 118097136 -66191526 + AluSq SINE Alu 1 310 -3 22 0 0 0 chr4 118097661 118097683 -66190979 + AT_rich Low_complexity Low_complexity 1 22 0 536 257 0 0 chr4 118098026 118098135 -66190527 - Charlie3 DNA MER1_type -2599 111 3 220 300 38 25 chr4 118098226 118098306 -66190356 - MIR SINE MIR -103 159 79 478 255 21 117 chr4 118098894 118098945 -66189717 - MIR3 SINE MIR -23 185 131 1985 123 24 3 chr4 118098945 118099238 -66189424 - AluSx SINE Alu -13 299 1 478 255 21 117 chr4 118099238 118099374 -66189288 - MIR3 SINE MIR -77 131 16 567 279 164 0 chr4 118099974 118100182 -66188480 - MIR SINE MIR 0 262 21 343 332 159 0 chr4 118100306 118100520 -66188142 + MIR SINE MIR 11 258 -4 234 62 0 0 chr4 118101339 118101371 -66187291 + (TC)n Simple_repeat Simple_repeat 2 33 0 321 316 51 17 chr4 118101426 118101543 -66187119 + L2 LINE L2 2969 3089 -183 2019 246 66 44 chr4 118101581 118102154 -66186508 - MLT1E LTR MaLR -7 586 1 1971 124 16 3 chr4 118102648 118102954 -66185708 + AluSx SINE Alu 1 310 -2 883 306 94 3 chr4 118103043 118103416 -66185246 - LTR33A LTR ERVL -56 467 61 8488 122 12 5 chr4 118104771 118106062 -66182600 - HSMAR2 DNA Mariner -2 1300 2 300 209 0 35 chr4 118106684 118106799 -66181863 + CT-rich Low_complexity Low_complexity 1 111 0 294 312 156 13 chr4 118106941 118107095 -66181567 - MIR SINE MIR -29 233 58 373 347 67 16 chr4 118107108 118107301 -66181361 + MIR3 SINE MIR 4 206 -2 198 0 0 0 chr4 118107375 118107397 -66181265 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1007 163 36 66 chr4 118107399 118107595 -66181067 - AluJo SINE Alu -30 282 93 520 313 70 33 chr4 118108175 118108814 -66179848 - L1MC4a LINE L1 -1888 5920 5258 25 51 0 0 chr4 118109018 118109057 -66179605 + AT_rich Low_complexity Low_complexity 1 39 0 385 53 18 0 chr4 118109081 118109138 -66179524 - L1PA4 LINE L1 -3 6152 6095 414 375 49 25 chr4 118109138 118109546 -66179116 - L1MC4a LINE L1 -1164 4982 4565 23 33 0 0 chr4 118109546 118109576 -66179086 + AT_rich Low_complexity Low_complexity 1 30 0 435 304 88 39 chr4 118109697 118110245 -66178417 - L1MC4a LINE L1 -1780 4366 3846 1667 189 7 20 chr4 118110245 118110546 -66178116 + AluJb SINE Alu 3 299 -13 435 304 88 39 chr4 118110546 118111585 -66177077 - L1MC4a LINE L1 -2300 3846 2702 287 188 35 0 chr4 118111660 118111745 -66176917 + (TA)n Simple_repeat Simple_repeat 1 88 0 256 188 0 0 chr4 118111745 118111793 -66176869 - Alu SINE Alu -15 287 240 229 196 0 0 chr4 118112279 118112335 -66176327 + (TA)n Simple_repeat Simple_repeat 1 56 0 432 55 0 0 chr4 118112350 118112405 -66176257 + (TG)n Simple_repeat Simple_repeat 2 56 0 22 0 0 0 chr4 118113102 118113124 -66175538 + AT_rich Low_complexity Low_complexity 1 22 0 1288 280 29 0 chr4 118113761 118114104 -66174558 + L2 LINE L2 1869 2221 -1093 577 279 34 6 chr4 118114185 118114364 -66174298 - MIR SINE MIR -64 198 15 22 0 0 0 chr4 118114741 118114763 -66173899 + AT_rich Low_complexity Low_complexity 1 22 0 397 312 32 13 chr4 118114847 118115001 -66173661 + L2 LINE L2 1899 2055 -1259 1814 114 7 11 chr4 118115131 118115444 -66173218 + AluSg SINE Alu 40 351 0 341 358 73 29 chr4 118115734 118116050 -66172612 + L2 LINE L2 2581 2910 -404 2310 194 36 6 chr4 118117258 118117752 -66170910 - L1MB5 LINE L1 -8 6166 5658 194 330 66 9 chr4 118118487 118118593 -66170069 - L2 LINE L2 -250 3022 2911 187 424 32 20 chr4 118119371 118119621 -66169041 - L2 LINE L2 -639 2675 2423 446 163 0 44 chr4 118119670 118119799 -66168863 + AluJ SINE Alu 64 259 -53 2196 204 57 35 chr4 118120117 118120626 -66168036 + MLT2B1 LTR ERVL 1 520 0 3846 230 39 80 chr4 118120626 118122055 -66166607 + MLT1A2-int LTR MaLR 1 1370 -1 1164 221 160 9 chr4 118122056 118122381 -66166281 + MLT1A2 LTR MaLR 1 374 0 978 217 128 18 chr4 118122730 118123164 -66165498 - Charlie2a DNA MER1_type -260 2602 2121 1704 158 47 59 chr4 118123164 118123206 -66165456 - Charlie1 DNA MER1_type -1 2760 2719 2841 7 0 0 chr4 118123206 118123512 -66165150 - AluY SINE Alu -5 306 1 1704 158 47 59 chr4 118123512 118123892 -66164770 - Charlie1 DNA MER1_type -42 2719 2343 273 333 0 14 chr4 118123890 118123962 -66164700 - Charlie1 DNA MER1_type -2690 71 1 * 1440 217 70 46 chr4 118123963 118124489 -66164173 - Charlie2a DNA MER1_type -732 2130 1592 207 0 0 0 chr4 118124763 118124786 -66163876 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 198 0 0 0 chr4 118125344 118125366 -66163296 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 2528 45 0 0 chr4 118126186 118126475 -66162187 + AluY SINE Alu 1 289 -22 407 274 69 34 chr4 118127397 118127601 -66161061 - MIR SINE MIR -50 212 2 360 404 58 25 chr4 118127904 118128337 -66160325 - L2 LINE L2 -711 2603 2157 1503 208 81 69 chr4 118129494 118129612 -66159050 - MER34B LTR ERV1 0 585 470 2334 134 65 2 chr4 118129612 118130015 -66158647 - MSTA LTR MaLR 0 428 1 1503 208 81 69 chr4 118130015 118130443 -66158219 - MER34B LTR ERV1 -115 470 11 218 312 86 0 chr4 118130640 118130733 -66157929 - MER5A DNA MER1_type -28 161 61 261 271 17 0 chr4 118130760 118130819 -66157843 + MER5A DNA MER1_type 9 68 -121 4121 79 5 9 chr4 118130845 118130942 -66157720 - MER41A LTR ERV1 0 554 458 2516 181 95 53 chr4 118130942 118131529 -66157133 - LTR9 LTR ERV1 0 612 1 4121 79 5 9 chr4 118131529 118131985 -66156677 - MER41A LTR ERV1 -96 458 3 847 256 72 61 chr4 118131986 118132346 -66156316 + LTR40c LTR ERVL 68 431 -34 3295 71 45 0 chr4 118132436 118132861 -66155801 + MLT2A1 LTR ERVL 1 444 0 2223 145 62 0 chr4 118132989 118133347 -66155315 - MSTA LTR MaLR -48 380 1 6889 157 12 23 chr4 118133893 118134881 -66153781 - L1PA13 LINE L1 -3 6160 5162 435 83 0 0 chr4 118134881 118134941 -66153721 + (TA)n Simple_repeat Simple_repeat 2 61 0 6889 157 12 23 chr4 118134941 118136028 -66152634 - L1PA13 LINE L1 -1001 5162 4084 1679 144 32 102 chr4 118138408 118138561 -66150101 - THE1C LTR MaLR 0 375 213 2282 85 0 29 chr4 118138561 118138867 -66149795 - AluY SINE Alu -14 297 1 1679 144 32 102 chr4 118138867 118139116 -66149546 - THE1C LTR MaLR -162 213 1 9905 126 34 9 chr4 118139116 118140655 -66148007 - THE1C-int LTR MaLR 0 1580 3 1731 133 60 86 chr4 118140657 118141042 -66147620 - THE1C LTR MaLR 0 375 1 2129 71 7 0 chr4 118141431 118141714 -66146948 - L1PA7 LINE L1 -1 6153 5869 662 176 7 7 chr4 118141753 118141889 -66146773 - Charlie1 DNA MER1_type -6 2755 2620 * 814 235 24 24 chr4 118141871 118142084 -66146578 - Charlie1 DNA MER1_type -2519 242 30 1902 275 112 43 chr4 118143165 118143604 -66145058 + Charlie2a DNA MER1_type 31 438 -2424 180 77 0 0 chr4 118143604 118143630 -66145032 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 1902 275 112 43 chr4 118143630 118143644 -66145018 + Charlie2a DNA MER1_type 438 450 -2412 1598 161 56 4 chr4 118143644 118143911 -66144751 - AluJb SINE Alu -29 283 3 1902 275 112 43 chr4 118143911 118144399 -66144263 + Charlie2a DNA MER1_type 450 1038 -1824 1676 246 65 32 chr4 118144409 118144852 -66143810 + LTR40a LTR ERVL 62 519 0 350 278 0 0 chr4 118145338 118145428 -66143234 + Charlie2 DNA MER1_type 1882 1971 -891 342 0 0 0 chr4 118145429 118145467 -66143195 + (CA)n Simple_repeat Simple_repeat 2 39 0 1200 231 101 25 chr4 118145596 118146190 -66142472 + Charlie2 DNA MER1_type 2218 2856 -6 1645 195 3 20 chr4 118146449 118146746 -66141916 - AluJo SINE Alu -20 292 1 596 212 38 60 chr4 118146813 118146997 -66141665 - MER104 DNA MER2_type 0 180 1 2977 209 36 72 chr4 118147022 118147549 -66141113 - L1ME1 LINE L1 -1 6165 5691 2083 126 0 4 chr4 118147549 118147881 -66140781 - AluSx SINE Alu 0 338 8 2977 209 36 72 chr4 118147881 118148329 -66140333 - L1ME1 LINE L1 -475 5691 5229 221 191 0 43 chr4 118148329 118148376 -66140286 - MER5A DNA MER1_type -124 65 21 232 268 309 8 chr4 118148393 118148516 -66140146 - MER5A DNA MER1_type 0 189 30 230 284 15 15 chr4 118148538 118148605 -66140057 - L2 LINE L2 -208 3064 2998 363 359 126 21 chr4 118148803 118149422 -66139240 - L2 LINE L2 -559 2755 2072 24 53 0 0 chr4 118149492 118149530 -66139132 + AT_rich Low_complexity Low_complexity 1 38 0 227 316 32 42 chr4 118150798 118150893 -66137769 + MIR3 SINE MIR 12 105 -103 1352 106 0 72 chr4 118150988 118151224 -66137438 - LTR22A LTR ERVK -239 219 1 2114 80 0 4 chr4 118152745 118153007 -66135655 - AluY SINE Alu -22 289 29 21 36 0 0 chr4 118153349 118153377 -66135285 + AT_rich Low_complexity Low_complexity 1 28 0 182 318 68 0 chr4 118154517 118154605 -66134057 + MIR SINE MIR 50 143 -119 295 342 93 73 chr4 118154736 118155037 -66133625 + L2 LINE L2 2950 3256 -16 194 385 0 0 chr4 118155169 118155265 -66133397 - MIR3 SINE MIR -8 200 105 238 250 73 42 chr4 118155399 118155495 -66133167 + MIR SINE MIR 118 216 -46 255 364 121 4 chr4 118156494 118156766 -66131896 - L3 LINE CR1 -182 1395 1092 248 267 23 12 chr4 118157122 118157208 -66131454 - L1ME4a LINE L1 -96 6305 6219 242 151 38 0 chr4 118157217 118157270 -66131392 + (CATATA)n Simple_repeat Simple_repeat 3 57 0 212 261 11 11 chr4 118157282 118157374 -66131288 + (TA)n Simple_repeat Simple_repeat 2 93 0 1957 140 143 13 chr4 118157395 118157774 -66130888 - MSTA LTR MaLR 0 428 1 1757 170 11 0 chr4 118157802 118158085 -66130577 - AluJo SINE Alu -12 300 15 405 103 0 0 chr4 118159155 118159223 -66129439 + (GA)n Simple_repeat Simple_repeat 2 69 0 216 0 0 0 chr4 118159540 118159564 -66129098 + (TG)n Simple_repeat Simple_repeat 1 24 0 * 276 30 0 0 chr4 118159563 118159596 -66129066 + (GA)n Simple_repeat Simple_repeat 1 33 0 30 0 0 0 chr4 118159962 118159992 -66128670 + AT_rich Low_complexity Low_complexity 1 30 0 282 297 146 5 chr4 118160064 118160256 -66128406 - L1ME4a LINE L1 -1987 6101 5883 343 222 51 8 chr4 118160646 118160763 -66127899 - HAL1 LINE L1 -116 2391 2270 2744 233 55 23 chr4 118160807 118161887 -66126775 - L1MCb LINE L1 -3009 3555 2446 1737 138 29 80 chr4 118161888 118162126 -66126536 - L1MB1 LINE L1 -2 6402 6188 992 176 0 6 chr4 118162126 118162285 -66126377 - FAM SINE Alu -17 158 1 1737 138 29 80 chr4 118162285 118162423 -66126239 - L1MB1 LINE L1 -216 6188 6045 1180 123 88 48 chr4 118162424 118162652 -66126010 + MSTB1 LTR MaLR 1 237 -195 348 43 0 0 chr4 118162804 118162850 -66125812 + (CA)n Simple_repeat Simple_repeat 2 47 0 6922 175 17 70 chr4 118162850 118163274 -66125388 - L1MB1 LINE L1 -880 5502 5057 2241 124 0 0 chr4 118163274 118163572 -66125090 - AluSx SINE Alu -14 298 1 6922 175 17 70 chr4 118163572 118164601 -66124061 - L1MB1 LINE L1 -1325 5057 4145 1917 147 4 0 chr4 118164601 118164880 -66123782 - AluJb SINE Alu -28 284 5 6922 175 17 70 chr4 118164880 118165093 -66123569 - L1MB1 LINE L1 -2237 4145 3922 265 171 0 0 chr4 118165100 118165141 -66123521 + polypyrimidine Low_complexity Low_complexity 1 41 0 883 117 7 7 chr4 118165141 118165295 -66123367 + (TTC)n Simple_repeat Simple_repeat 2 155 0 5453 253 43 20 chr4 118165297 118168386 -66120276 - L1MB1 LINE L1 -2451 3931 829 1090 275 74 61 chr4 118168546 118169200 -66119462 - L1M3de LINE L1 -5210 681 11 704 234 110 5 chr4 118169206 118169424 -66119238 - L1MCb LINE L1 -4112 2452 2212 1200 178 66 13 chr4 118169446 118169763 -66118899 - L1M2 LINE L1 -4242 2185 1691 2962 211 16 23 chr4 118169774 118170347 -66118315 + MER21B LTR ERV1 3 571 -292 1419 294 72 10 chr4 118170348 118170861 -66117801 - L1MCb LINE L1 -5500 545 1 420 319 53 14 chr4 118171266 118171551 -66117111 - HAL1 LINE L1 -1149 1358 1063 192 77 0 0 chr4 118171574 118171600 -66117062 + (TTTTC)n Simple_repeat Simple_repeat 4 29 0 872 152 0 0 chr4 118171624 118171756 -66116906 - FLAM_C SINE Alu -1 132 1 25 65 0 0 chr4 118171882 118171928 -66116734 + AT_rich Low_complexity Low_complexity 1 46 0 272 297 21 21 chr4 118171928 118172073 -66116589 - HAL1 LINE L1 -1535 972 828 438 169 0 0 chr4 118172208 118172291 -66116371 + MER53 DNA DNA 3 85 -104 308 354 28 87 chr4 118172291 118172545 -66116117 - HAL1 LINE L1 -1798 709 471 1309 327 76 49 chr4 118172907 118174528 -66114134 - ERVL LTR ERVL -2018 3746 2013 2118 194 22 25 chr4 118174558 118175067 -66113595 - L1MA7 LINE L1 0 6291 5785 32 0 0 0 chr4 118175708 118175740 -66112922 + AT_rich Low_complexity Low_complexity 1 32 0 4022 133 6 15 chr4 118175740 118176414 -66112248 - L1MA8 LINE L1 -4 6287 5620 1822 309 60 36 chr4 118177254 118178067 -66110595 + L1M3c LINE L1 5 887 -5254 * 2095 246 58 31 chr4 118178049 118178513 -66110149 + L1MEc LINE L1 2740 3190 -4375 17270 146 27 12 chr4 118178513 118179758 -66108904 - Tigger3(Golem) DNA MER2_type 0 3029 1804 2211 110 0 7 chr4 118179758 118180058 -66108604 - AluSp SINE Alu -15 298 1 17270 146 27 12 chr4 118180058 118181796 -66106866 - Tigger3(Golem) DNA MER2_type -1225 1804 1 2095 246 58 31 chr4 118181796 118182394 -66106268 + L1MEc LINE L1 3190 3674 -3891 * 2715 202 32 8 chr4 118182390 118183210 -66105452 + L1M3 LINE L1 4772 5623 -545 1907 123 63 36 chr4 118183210 118183575 -66105087 - THE1C LTR MaLR 0 375 1 2715 202 32 8 chr4 118183575 118183751 -66104911 + L1M3 LINE L1 5623 5793 -375 2109 157 36 3 chr4 118185916 118186248 -66102414 + MLT1A1 LTR MaLR 3 345 -20 33 25 0 0 chr4 118186298 118186338 -66102324 + AT_rich Low_complexity Low_complexity 1 40 0 4079 181 34 12 chr4 118186567 118187231 -66101431 - L1PA16 LINE L1 -7 6159 5420 198 0 0 0 chr4 118187231 118187253 -66101409 + (TTA)n Simple_repeat Simple_repeat 2 23 0 4079 181 34 12 chr4 118187253 118187761 -66100901 - L1PA16 LINE L1 -746 5420 4925 255 214 0 0 chr4 118188486 118188556 -66100106 + A-rich Low_complexity Low_complexity 1 70 0 234 351 43 0 chr4 118189393 118189487 -66099175 + L2 LINE L2 3154 3251 -21 551 261 25 37 chr4 118189868 118190029 -66098633 - L2 LINE L2 -2 3311 3153 209 311 168 0 chr4 118190254 118190415 -66098247 + MIR SINE MIR 69 256 -6 552 15 0 0 chr4 118191182 118191247 -66097415 + (CA)n Simple_repeat Simple_repeat 2 66 0 5575 149 19 10 chr4 118192883 118194619 -66094043 - L1PA13 LINE L1 -20 6143 4398 2324 176 52 2 chr4 118194744 118195187 -66093475 - MLT1C LTR MaLR -2 465 1 2597 218 62 7 chr4 118195603 118196180 -66092482 + MLT1E2 LTR MaLR 18 626 0 2622 52 0 0 chr4 118197545 118197854 -66090808 + AluY SINE Alu 3 311 0 625 259 0 0 chr4 118198023 118198243 -66090419 + AluY SINE Alu 92 311 0 1438 286 75 22 chr4 118198803 118199299 -66089363 + MLT1H1 LTR MaLR 1 522 -33 908 264 71 35 chr4 118199302 118199725 -66088937 - MLT1G LTR MaLR 0 590 114 52 40 0 30 chr4 118200037 118200058 -66088604 + AT_rich Low_complexity Low_complexity 1 21 -75 1692 172 3 14 chr4 118200058 118200364 -66088298 - AluJb SINE Alu 0 303 1 52 40 0 30 chr4 118200364 118200439 -66088223 + AT_rich Low_complexity Low_complexity 21 96 0 372 303 229 11 chr4 118200815 118201003 -66087659 - MIR SINE MIR -14 248 20 3124 140 9 6 chr4 118201822 118202358 -66086304 + L1PA16 LINE L1 5628 6165 -1 2079 163 34 8 chr4 118202917 118203272 -66085390 - THE1B LTR MaLR 0 364 1 11241 91 44 0 chr4 118203272 118204786 -66083876 - THE1B-int LTR MaLR 0 1580 1 2128 147 36 28 chr4 118204786 118205147 -66083515 - THE1B LTR MaLR 0 364 1 268 267 139 0 chr4 118205177 118205263 -66083399 + MLT1F LTR MaLR 5 102 -440 * 327 175 0 0 chr4 118205258 118205321 -66083341 + MLT1F1 LTR MaLR 489 551 -16 301 212 64 112 chr4 118205352 118205602 -66083060 - HAL1b LINE L1 -507 841 604 391 293 91 30 chr4 118205897 118206095 -66082567 + MIR SINE MIR 20 229 -33 2276 275 64 51 chr4 118206095 118206899 -66081763 - L1ME LINE L1 -4865 1215 411 947 230 71 68 chr4 118206899 118207294 -66081368 + MSTD LTR MaLR 1 396 0 2276 275 64 51 chr4 118207294 118207706 -66080956 - L1ME LINE L1 -5669 411 6 437 194 29 10 chr4 118207767 118207870 -66080792 + MLT1A1 LTR MaLR 1 105 -260 2488 175 34 20 chr4 118207893 118208706 -66079956 + L1P4 LINE L1 4711 5536 -630 1077 205 29 5 chr4 118208721 118208926 -66079736 + MLT1A1 LTR MaLR 156 365 0 21 0 0 0 chr4 118208966 118208987 -66079675 + AT_rich Low_complexity Low_complexity 1 21 0 389 303 61 18 chr4 118209167 118209332 -66079330 + MIR SINE MIR 70 241 -21 237 350 106 38 chr4 118209454 118209614 -66079048 + L2 LINE L2 3094 3264 -8 2613 133 36 2 chr4 118211987 118212431 -66076231 + L1PA16 LINE L1 5708 6166 0 1655 178 24 3 chr4 118212514 118212806 -66075856 + AluJo SINE Alu 1 298 -14 231 318 228 9 chr4 118213858 118214069 -66074593 - L2 LINE L2 -1056 2258 2002 2431 111 0 34 chr4 118214158 118214546 -66074116 + THE1C LTR MaLR 1 375 0 227 260 106 10 chr4 118214879 118214983 -66073679 + L1MEc LINE L1 1049 1162 -5234 28 61 0 0 chr4 118214990 118215039 -66073623 + AT_rich Low_complexity Low_complexity 1 49 0 4029 271 63 43 chr4 118215083 118217553 -66071109 + L1MEc LINE L1 1230 3734 -2481 505 244 84 8 chr4 118217568 118217699 -66070963 + MER70A LTR ERVL 4 144 -328 2180 136 19 27 chr4 118217710 118218077 -66070585 - THE1B LTR MaLR 0 364 1 4140 96 2 46 chr4 118218077 118218682 -66069980 - THE1B-int LTR MaLR 0 1580 1003 373 314 186 9 chr4 118218778 118218988 -66069674 - L2 LINE L2 -1344 1970 1724 1271 177 25 130 chr4 118219095 118219472 -66069190 - L1MC2 LINE L1 -20 6324 6050 2216 103 0 7 chr4 118219472 118219772 -66068890 - AluSx SINE Alu -14 298 1 1271 177 25 130 chr4 118219772 118219901 -66068761 - L1MC2 LINE L1 -294 6050 5909 815 241 47 4 chr4 118219913 118220149 -66068513 - L1ME1 LINE L1 -135 6031 5786 30 0 0 0 chr4 118220463 118220493 -66068169 + AT_rich Low_complexity Low_complexity 1 30 0 207 0 0 0 chr4 118220623 118220646 -66068016 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 842 185 7 0 chr4 118220646 118220792 -66067870 - FRAM SINE Alu -19 147 1 435 281 209 29 chr4 118222026 118222236 -66066426 - MIR SINE MIR 0 262 15 934 296 173 6 chr4 118222613 118223133 -66065529 - L2 LINE L2 -923 2391 1785 320 339 161 33 chr4 118223239 118223599 -66065063 + L2 LINE L2 202 607 -2707 335 339 24 54 chr4 118223854 118224022 -66064640 + L2 LINE L2 2915 3077 -195 2566 55 0 3 chr4 118224200 118224511 -66064151 - AluY SINE Alu -1 310 1 21 36 0 0 chr4 118225366 118225394 -66063268 + AT_rich Low_complexity Low_complexity 1 28 0 2095 50 111 0 chr4 118225913 118226193 -66062469 + AluY SINE Alu 1 311 0 310 295 63 0 chr4 118226591 118226686 -66061976 + MIR3 SINE MIR 92 192 -16 1629 98 8 21 chr4 118227434 118227668 -66060994 - AluSg/x SINE Alu -14 296 66 202 303 40 30 chr4 118228464 118228563 -66060099 + L2 LINE L2 3173 3272 0 23 0 0 0 chr4 118228833 118228856 -66059806 + AT_rich Low_complexity Low_complexity 1 23 0 281 320 0 19 chr4 118228932 118229035 -66059627 - MIR SINE MIR -6 256 156 191 36 36 0 chr4 118229058 118229086 -66059576 + (CAAAAA)n Simple_repeat Simple_repeat 3 31 0 319 320 40 0 chr4 118229619 118229744 -66058918 + MIR3 SINE MIR 72 201 -7 22 0 0 0 chr4 118230068 118230090 -66058572 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 118230381 118230406 -66058256 + AT_rich Low_complexity Low_complexity 1 25 0 723 240 88 115 chr4 118231092 118231658 -66057004 + L1MEd LINE L1 22 572 -5547 * 1730 127 88 41 chr4 118231657 118231997 -66056665 + L1MB4 LINE L1 5445 5800 -380 1887 103 43 7 chr4 118231997 118232272 -66056390 + L1PA10 LINE L1 5861 6148 -20 192 77 0 0 chr4 118232272 118232298 -66056364 + (CAAAT)n Simple_repeat Simple_repeat 5 30 0 1621 201 16 31 chr4 118232306 118232690 -66055972 + L1MB4 LINE L1 5803 6180 0 423 263 101 51 chr4 118232692 118232909 -66055753 + L1MEd LINE L1 563 790 -5329 280 282 94 0 chr4 118232928 118233045 -66055617 + HAL1 LINE L1 1511 1638 -869 743 255 33 4 chr4 118233176 118233409 -66055253 - Charlie1b DNA MER1_type -2 521 282 340 123 55 68 chr4 118233409 118233482 -66055180 + MER4A LTR ERV1 1 72 -592 * 815 164 0 21 chr4 118233466 118233606 -66055056 + MER4A LTR ERV1 527 663 -1 1081 213 66 40 chr4 118233608 118233881 -66054781 - Charlie1b DNA MER1_type -241 282 3 5966 157 42 10 chr4 118233930 118234605 -66054057 + L1PA15 LINE L1 4095 4746 -1419 2153 115 48 28 chr4 118234605 118234962 -66053700 + THE1B LTR MaLR 1 364 0 5966 157 42 10 chr4 118234962 118236281 -66052381 + L1PA15 LINE L1 4746 6159 -6 1555 188 25 12 chr4 118236922 118237242 -66051420 - L1MA9 LINE L1 -314 5998 5675 3084 111 12 19 chr4 118237283 118237769 -66050893 - L1PA15 LINE L1 -4 6161 5679 434 299 35 83 chr4 118237828 118238250 -66050412 - L1PA12 LINE L1 -7168 413 12 672 163 3 24 chr4 118238252 118238397 -66050265 - L1P5 LINE L1 -461 5690 5546 182 36 0 36 chr4 118238497 118238525 -66050137 + (CATA)n Simple_repeat Simple_repeat 4 30 0 1871 165 131 11 chr4 118238576 118238958 -66049704 - MSTA LTR MaLR 0 428 1 5559 144 23 17 chr4 118238963 118239912 -66048750 - MSTA-int LTR MaLR -6 1574 620 1015 206 117 29 chr4 118240012 118240418 -66048244 + L1MB8 LINE L1 5227 5698 -486 1743 118 58 31 chr4 118240423 118240775 -66047887 + Tigger3(Golem) DNA MER2_type 1 3009 -20 1889 161 105 33 chr4 118240785 118241214 -66047448 + L1MB8 LINE L1 5717 6176 -2 28 0 0 0 chr4 118241235 118241263 -66047399 + AT_rich Low_complexity Low_complexity 1 28 0 1978 144 0 3 chr4 118241516 118241822 -66046840 - AluSx SINE Alu -5 307 3 1912 152 34 6 chr4 118242121 118242449 -66046213 - MER1B DNA MER1_type 0 337 1 643 225 27 69 chr4 118242474 118242642 -66046020 - L1MA9 LINE L1 -92 6220 6065 2146 103 0 7 chr4 118242642 118242934 -66045728 - AluSx SINE Alu -22 290 1 643 225 27 69 chr4 118242934 118243027 -66045635 - L1MA9 LINE L1 -247 6065 5970 7742 195 43 67 chr4 118243150 118245563 -66043099 - L1M4 LINE L1 -743 5403 3089 187 316 92 0 chr4 118245785 118245861 -66042801 + L2 LINE L2 2291 2373 -941 898 79 29 7 chr4 118246407 118246547 -66042115 - L1PA12 LINE L1 0 6168 6026 1907 113 57 39 chr4 118246648 118246984 -66041678 - MSTA-int LTR MaLR -1235 345 4 1782 153 189 0 chr4 118246984 118247344 -66041318 - MSTA LTR MaLR 0 428 1 944 212 129 12 chr4 118247363 118247604 -66041058 - L2 LINE L2 -535 2779 2511 23942 124 11 25 chr4 118247605 118252330 -66036332 + L1PA10 LINE L1 1511 6168 0 224 226 0 24 chr4 118252461 118252545 -66036117 + (TATG)n Simple_repeat Simple_repeat 2 83 0 1259 307 50 18 chr4 118253627 118254064 -66034598 + L2 LINE L2 2854 3304 -9 186 103 0 0 chr4 118254113 118254142 -66034520 + (TATG)n Simple_repeat Simple_repeat 4 32 0 285 29 0 0 chr4 118254199 118254233 -66034429 + (CA)n Simple_repeat Simple_repeat 1 34 0 240 86 0 0 chr4 118254234 118254269 -66034393 + (TC)n Simple_repeat Simple_repeat 2 36 0 2232 57 53 0 chr4 118254748 118255031 -66033631 - AluY SINE Alu -13 298 1 21 36 0 0 chr4 118255353 118255381 -66033281 + AT_rich Low_complexity Low_complexity 1 28 0 6707 120 16 5 chr4 118255586 118256764 -66031898 - L1MA4 LINE L1 -11 6289 5090 305 239 55 55 chr4 118258169 118258278 -66030384 + L2 LINE L2 3203 3311 -2 1476 177 56 73 chr4 118258687 118259274 -66029388 - L1ME LINE L1 -451 5713 5141 2476 73 0 0 chr4 118259275 118259575 -66029087 - AluY SINE Alu -11 300 1 690 235 108 30 chr4 118259576 118259844 -66028818 - L1ME LINE L1 -1177 4969 4681 1151 61 0 3 chr4 118259847 118260076 -66028586 + AluYa8 SINE Alu 1 305 -5 970 199 3 87 chr4 118260085 118260407 -66028255 - L1ME LINE L1 -1471 4675 4381 237 59 0 59 chr4 118260680 118260731 -66027931 + (TTTTA)n Simple_repeat Simple_repeat 1 48 0 7177 206 55 53 chr4 118260731 118264479 -66024183 - L1PA3 LINE L1 -24 6131 2380 355 338 15 19 chr4 118264487 118264756 -66023906 - L1MEc LINE L1 -5453 943 676 343 252 76 25 chr4 118266242 118266361 -66022301 - MER104 DNA Tc2 -5 175 51 3278 100 30 63 chr4 118267763 118268354 -66020308 - L1MA3 LINE L1 0 6305 5734 1968 125 44 3 chr4 118268737 118269032 -66019630 + AluSg SINE Alu 1 307 -3 2192 106 7 3 chr4 118270201 118270502 -66018160 - AluSq SINE Alu -11 302 1 241 57 0 0 chr4 118271308 118271343 -66017319 - HSMAR1 DNA Mariner -1252 35 1 207 114 0 0 chr4 118272084 118272119 -66016543 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr4 118273260 118273281 -66015381 + AT_rich Low_complexity Low_complexity 1 21 0 3104 136 14 0 chr4 118273756 118274264 -66014398 - L1MB1 LINE L1 0 6168 5654 216 263 18 0 chr4 118274509 118274566 -66014096 + (TTG)n Simple_repeat Simple_repeat 1 58 0 555 318 38 17 chr4 118274708 118274944 -66013718 + MIR SINE MIR 10 250 -12 416 356 18 0 chr4 118275677 118275840 -66012822 + L2 LINE L2 1029 1194 -2120 2392 313 102 47 chr4 118275883 118277168 -66011494 + L2 LINE L2 1442 2826 -487 2297 99 3 0 chr4 118277168 118277470 -66011192 - AluSp SINE Alu -10 303 1 2392 313 102 47 chr4 118277470 118277713 -66010949 + L2 LINE L2 2826 3054 -259 1978 218 31 14 chr4 118278105 118278592 -66010070 + L1MD1 LINE L1 4636 5130 -1016 783 321 135 45 chr4 118278741 118279511 -66009151 - L2 LINE L2 -1977 1337 499 301 287 40 20 chr4 118279543 118279644 -66009018 - L2 LINE L2 -2074 1240 1138 454 321 89 18 chr4 118279846 118280070 -66008592 - MIR SINE MIR -10 252 13 1248 214 47 10 chr4 118280577 118280900 -66007762 - L1MC4 LINE L1 -17 8025 7454 12510 147 68 14 chr4 118280901 118283193 -66005469 + Tigger1 DNA MER2_type 2 2418 0 10665 160 20 13 chr4 118283193 118285173 -66003489 - L1M4c LINE L1 -4374 2010 18 220 333 128 35 chr4 118285347 118285488 -66003174 + MER5B DNA MER1_type 1 154 -24 209 255 0 0 chr4 118286001 118286048 -66002614 + CT-rich Low_complexity Low_complexity 4 50 0 441 312 54 47 chr4 118286091 118286370 -66002292 + L2 LINE L2 3032 3312 -1 4014 216 28 0 chr4 118286835 118287691 -66000971 + L1MD1 LINE L1 5350 6229 -13 420 241 0 0 chr4 118289225 118289308 -65999354 - MLT1E2-int LTR MaLR -507 864 782 274 233 17 0 chr4 118289609 118289669 -65998993 - MLT1E2-int LTR MaLR -771 600 540 1573 278 48 11 chr4 118289669 118290208 -65998454 - MLT1E2-int LTR MaLR -807 564 6 1128 266 60 14 chr4 118290210 118290563 -65998099 - MLT1E2 LTR MaLR -1 625 257 298 332 155 44 chr4 118290964 118291677 -65996985 - L2 LINE L2 -1 3312 2512 262 349 46 37 chr4 118292041 118292259 -65996403 - MIR SINE MIR -28 234 15 251 315 105 37 chr4 118292754 118292916 -65995746 - MIR SINE MIR -70 192 20 22 0 0 0 chr4 118294254 118294276 -65994386 + AT_rich Low_complexity Low_complexity 1 22 0 375 226 0 0 chr4 118294612 118294714 -65993948 + CT-rich Low_complexity Low_complexity 3 104 0 332 173 57 43 chr4 118295069 118295170 -65993492 + MIR SINE MIR 63 163 -45 267 54 0 0 chr4 118295173 118295210 -65993452 - MADE1 DNA Mariner 0 80 44 267 315 0 0 chr4 118295213 118295286 -65993376 + MIR SINE MIR 181 253 -9 1449 198 29 18 chr4 118295311 118295584 -65993078 - AluJb SINE Alu -36 276 1 23 0 0 0 chr4 118296683 118296706 -65991956 + AT_rich Low_complexity Low_complexity 1 23 0 701 167 0 51 chr4 118297780 118297918 -65990744 + AluJo SINE Alu 1 131 -181 192 268 89 0 chr4 118298584 118298640 -65990022 + MIR SINE MIR 172 232 -30 1099 214 66 0 chr4 118298753 118299017 -65989645 + L1MB5 LINE L1 5500 5784 -400 601 191 125 0 chr4 118299018 118299170 -65989492 + L1MB5 LINE L1 5982 6152 -22 268 330 85 0 chr4 118299535 118299641 -65989021 - MIR3 SINE MIR -13 195 81 733 109 0 0 chr4 118300241 118300342 -65988320 + HY3 scRNA scRNA 1 101 0 735 147 15 116 chr4 118300360 118300558 -65988104 + AluJo SINE Alu 123 300 -12 234 259 12 25 chr4 118301003 118301084 -65987578 + GA-rich Low_complexity Low_complexity 2 81 0 1772 189 0 3 chr4 118301246 118301548 -65987114 + AluJb SINE Alu 1 301 -11 321 195 26 0 chr4 118301713 118301790 -65986872 - L1MC4 LINE L1 -3 8039 7961 200 35 35 0 chr4 118301793 118301822 -65986840 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 42914 33 21 1 chr4 118301837 118307870 -65980792 - L1HS LINE L1 0 6155 1 510 275 124 17 chr4 118307968 118308201 -65980461 - L1MC4 LINE L1 -157 7885 7628 216 0 0 0 chr4 118308420 118308444 -65980218 + (T)n Simple_repeat Simple_repeat 1 24 0 1065 294 40 20 chr4 118308750 118309282 -65979380 - L1M4c LINE L1 -4524 1858 1267 661 231 102 117 chr4 118309436 118309708 -65978954 - L1ME LINE L1 -4779 1301 1026 2095 116 7 7 chr4 118309708 118310000 -65978662 - AluSx SINE Alu -20 292 1 1827 153 25 40 chr4 118310005 118310403 -65978259 - L1MA5A LINE L1 0 6297 5906 661 231 102 117 chr4 118310403 118310498 -65978164 - L1ME LINE L1 -5058 1022 927 2412 84 0 0 chr4 118310498 118310795 -65977867 - AluY SINE Alu -14 297 1 661 231 102 117 chr4 118310795 118311102 -65977560 - L1ME LINE L1 -5153 927 649 26 50 0 0 chr4 118311153 118311193 -65977469 + AT_rich Low_complexity Low_complexity 1 40 0 218 122 0 24 chr4 118312770 118312811 -65975851 + (TA)n Simple_repeat Simple_repeat 2 41 0 195 42 0 0 chr4 118314037 118314061 -65974601 + (TC)n Simple_repeat Simple_repeat 2 25 0 213 39 0 0 chr4 118314066 118314092 -65974570 + (TG)n Simple_repeat Simple_repeat 1 26 0 309 145 0 0 chr4 118314092 118314154 -65974508 + (GA)n Simple_repeat Simple_repeat 2 63 0 1779 185 85 20 chr4 118315127 118315527 -65973135 - MSTA LTR MaLR 0 428 3 2192 134 30 14 chr4 118315529 118315895 -65972767 - MSTA-int LTR MaLR 0 1580 1209 245 165 113 105 chr4 118317739 118317788 -65970874 - L1MA4 LINE L1 -4 6296 6249 1785 201 68 2 chr4 118317788 118318186 -65970476 - MSTB LTR MaLR -2 424 1 245 165 113 105 chr4 118318186 118318269 -65970393 - L1MA4 LINE L1 -51 6249 6163 243 128 0 0 chr4 118318270 118318309 -65970353 - MADE1 DNA Mariner 0 80 42 1017 205 35 5 chr4 118319221 118319421 -65969241 - AluJo SINE Alu -18 294 89 2180 133 0 9 chr4 118320793 118321108 -65967554 + AluSx SINE Alu 1 312 0 22 35 0 0 chr4 118321468 118321497 -65967165 + AT_rich Low_complexity Low_complexity 1 29 0 234 292 0 34 chr4 118321990 118322079 -65966583 - L1ME LINE L1 -301 5869 5784 351 0 0 0 chr4 118322094 118322133 -65966529 + (TAGA)n Simple_repeat Simple_repeat 3 41 0 273 254 36 98 chr4 118322313 118322588 -65966074 - L1M4 LINE L1 -3109 3037 2780 4686 188 30 28 chr4 118322624 118323777 -65964885 - L1MA4 LINE L1 -55 6245 5080 4764 170 24 53 chr4 118324017 118326033 -65962629 - L1MA4 LINE L1 -55 6245 4269 26 0 0 0 chr4 118326349 118326375 -65962287 + AT_rich Low_complexity Low_complexity 1 26 0 1658 84 22 4 chr4 118326904 118327129 -65961533 + MER30 DNA MER1_type 2 230 0 34 42 0 0 chr4 118327681 118327729 -65960933 + AT_rich Low_complexity Low_complexity 1 48 0 5101 160 28 23 chr4 118327816 118327974 -65960688 + L1MA8 LINE L1 5167 5323 -968 2054 122 14 0 chr4 118327974 118328260 -65960402 + AluSq SINE Alu 1 290 -23 5101 160 28 23 chr4 118328260 118329213 -65959449 + L1MA8 LINE L1 5323 6291 0 454 268 46 43 chr4 118329603 118329905 -65958757 + L1ME LINE L1 2852 3154 -2992 309 255 104 47 chr4 118329993 118330099 -65958563 + L1ME LINE L1 5486 5597 -569 269 352 40 16 chr4 118330234 118330359 -65958303 - L2 LINE L2 -12 3260 3133 498 237 9 9 chr4 118330684 118330798 -65957864 + FLAM_A SINE Alu 2 115 -18 30 27 0 0 chr4 118331262 118331299 -65957363 + AT_rich Low_complexity Low_complexity 1 37 0 458 306 97 23 chr4 118332333 118332549 -65956113 - MIR SINE MIR -17 245 14 36 0 0 0 chr4 118333170 118333206 -65955456 + AT_rich Low_complexity Low_complexity 1 36 0 587 263 178 36 chr4 118333548 118333997 -65954665 + MER113 DNA MER1_type? 6 518 -3 364 326 75 0 chr4 118334033 118334212 -65954450 + MIR SINE MIR 45 236 -26 243 277 94 45 chr4 118334203 118334405 -65954257 - L2 LINE L2 -4 3309 3098 * 297 0 0 0 chr4 118334739 118334772 -65953890 + (TG)n Simple_repeat Simple_repeat 2 34 0 188 284 117 62 chr4 118335982 118336144 -65952518 + MIR SINE MIR 52 222 -40 2049 196 35 0 chr4 118336833 118337235 -65951427 + MLT2C2 LTR ERVL 1 416 -48 345 100 0 0 chr4 118337250 118337300 -65951362 + (CA)n Simple_repeat Simple_repeat 1 50 0 306 314 24 0 chr4 118337319 118337443 -65951219 + (TA)n Simple_repeat Simple_repeat 2 128 0 191 163 0 23 chr4 118337451 118337494 -65951168 + (TATG)n Simple_repeat Simple_repeat 3 44 0 259 119 0 24 chr4 118337495 118337537 -65951125 + MLT2C2 LTR ERVL 473 513 -7 190 304 36 0 chr4 118338929 118338985 -65949677 + L2 LINE L2 3190 3247 -25 2285 206 57 12 chr4 118339327 118339832 -65948830 - MER74A LTR ERVL -24 534 7 27 0 0 0 chr4 118340610 118340637 -65948025 + AT_rich Low_complexity Low_complexity 1 27 0 525 280 141 51 chr4 118340745 118341213 -65947449 + L1M4 LINE L1 2117 2626 -3520 390 157 5 68 chr4 118341245 118341436 -65947226 + (TA)n Simple_repeat Simple_repeat 1 179 0 306 221 94 55 chr4 118341436 118341563 -65947099 + L1MC4 LINE L1 6610 6741 -1301 336 157 0 0 chr4 118341618 118341669 -65946993 + L1MA4 LINE L1 1240 1290 -5275 309 311 81 42 chr4 118341683 118341992 -65946670 - MER50 LTR ERV1 -406 328 8 339 195 37 12 chr4 118342090 118342172 -65946490 + L1MA4 LINE L1 1240 1323 -5242 12403 200 36 33 chr4 118342186 118342426 -65946236 + L1MA4 LINE L1 3202 3440 -4279 2288 102 3 6 chr4 118342426 118342739 -65945923 + AluSx SINE Alu 1 312 0 12403 200 36 33 chr4 118342739 118342949 -65945713 + L1MA4 LINE L1 3440 3648 -4071 2019 88 3 14 chr4 118342949 118343246 -65945416 + L1PA8 LINE L1 5879 6172 0 12403 200 36 33 chr4 118343246 118345265 -65943397 + L1MA4 LINE L1 3648 5658 -2061 1197 77 12 6 chr4 118345265 118345434 -65943228 + L1PA8 LINE L1 5992 6161 -11 12403 200 36 33 chr4 118345434 118347420 -65941242 + L1MA4 LINE L1 5658 7677 -42 497 265 125 69 chr4 118347454 118347903 -65940759 + L1M4 LINE L1 2772 3245 -2901 25 0 0 0 chr4 118347903 118347928 -65940734 + AT_rich Low_complexity Low_complexity 1 25 0 207 235 0 0 chr4 118348207 118348258 -65940404 + (TA)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr4 118348330 118348351 -65940311 + AT_rich Low_complexity Low_complexity 1 21 0 3485 49 0 11 chr4 118348550 118349003 -65939659 + LTR7 LTR ERV1 1 448 -2 19536 87 54 72 chr4 118349005 118352356 -65936306 + HERVH LTR ERV1 1 3290 -4423 3218 129 6 8 chr4 118352346 118352856 -65935806 + HERVH LTR ERV1 3492 4000 -3713 * 4375 143 0 1 chr4 118352850 118353513 -65935149 + HERVH LTR ERV1 4488 5149 -2564 1409 122 19 0 chr4 118353514 118353728 -65934934 + HERVH LTR ERV1 5600 5817 -1896 2525 66 48 13 chr4 118353730 118354107 -65934555 + HERVH LTR ERV1 7324 7713 0 3407 56 11 7 chr4 118354107 118354553 -65934109 + LTR7 LTR ERV1 1 448 -2 21 0 0 0 chr4 118356646 118356667 -65931995 + AT_rich Low_complexity Low_complexity 1 21 0 259 229 76 48 chr4 118358449 118358554 -65930108 + MLT1H LTR MaLR 383 490 -59 6661 184 20 16 chr4 118358635 118360189 -65928473 + L1M3f LINE L1 2 1624 -4065 2003 213 19 2 chr4 118360413 118360830 -65927832 + MSTB LTR MaLR 1 424 -2 22 0 0 0 chr4 118360850 118360872 -65927790 + AT_rich Low_complexity Low_complexity 1 22 0 204 387 73 7 chr4 118362069 118362206 -65926456 - MIR SINE MIR -86 176 31 446 248 76 0 chr4 118363715 118363860 -65924802 - L1MC5 LINE L1 -503 7458 7303 778 217 18 0 chr4 118363998 118364164 -65924498 + FRAM SINE Alu 1 162 -14 187 286 91 13 chr4 118364844 118364921 -65923741 + MIR SINE MIR 80 162 -100 22 0 0 0 chr4 118367516 118367538 -65921124 + AT_rich Low_complexity Low_complexity 1 22 0 14888 213 10 8 chr4 118367545 118367899 -65920763 - L1PB1 LINE L1 -8 6143 5791 186 43 0 0 chr4 118367899 118367922 -65920740 + (CATATA)n Simple_repeat Simple_repeat 2 24 0 300 53 0 0 chr4 118367924 118367962 -65920700 + (TG)n Simple_repeat Simple_repeat 2 39 0 14888 213 10 8 chr4 118367962 118372055 -65916607 - L1PB1 LINE L1 -360 5791 1703 27 29 0 0 chr4 118372414 118372448 -65916214 + AT_rich Low_complexity Low_complexity 1 34 0 188 280 0 0 chr4 118373321 118373371 -65915291 + L2 LINE L2 3264 3313 0 2563 53 0 0 chr4 118374618 118374919 -65913743 - AluY SINE Alu -10 301 1 2399 86 0 9 chr4 118375097 118375412 -65913250 - AluSx SINE Alu 0 312 1 2268 97 3 0 chr4 118376613 118376912 -65911750 + AluSc SINE Alu 1 300 -9 214 280 0 0 chr4 118376999 118377049 -65911613 + (CATATA)n Simple_repeat Simple_repeat 3 52 0 24 32 0 0 chr4 118378672 118378703 -65909959 + AT_rich Low_complexity Low_complexity 1 31 0 1325 252 82 69 chr4 118378789 118379142 -65909520 + L1MDa LINE L1 1124 1471 -5069 2151 126 32 8 chr4 118379142 118379522 -65909140 + L1MA5A LINE L1 5909 6297 0 1325 252 82 69 chr4 118379522 118379551 -65909111 + L1MDa LINE L1 1471 1498 -5042 2148 123 3 0 chr4 118379551 118379844 -65908818 + AluSx SINE Alu 5 298 -14 1325 252 82 69 chr4 118379844 118380373 -65908289 + L1MDa LINE L1 1498 2048 -4492 615 226 45 108 chr4 118380990 118381380 -65907282 + L1MC4 LINE L1 7689 7995 0 203 266 13 25 chr4 118381677 118381756 -65906906 + CT-rich Low_complexity Low_complexity 2 79 0 210 221 23 35 chr4 118381902 118381988 -65906674 + (TTAAA)n Simple_repeat Simple_repeat 2 86 0 26 50 0 0 chr4 118382322 118382362 -65906300 + AT_rich Low_complexity Low_complexity 1 40 0 630 193 18 0 chr4 118382364 118382478 -65906184 - FLAM_A SINE Alu -17 116 1 1627 175 34 10 chr4 118382507 118382799 -65905863 + AluJb SINE Alu 1 299 -13 23 0 0 0 chr4 118382865 118382888 -65905774 + AT_rich Low_complexity Low_complexity 1 23 0 247 267 0 0 chr4 118383346 118383406 -65905256 + MIR SINE MIR 79 138 -124 1065 195 20 34 chr4 118383791 118384209 -65904453 - L1MB5 LINE L1 -25 6153 5535 737 179 16 0 chr4 118385070 118385193 -65903469 - FLAM_C SINE Alu -8 125 1 630 266 52 0 chr4 118387340 118387494 -65901168 - MIR SINE MIR -9 253 92 329 253 6 18 chr4 118387857 118388023 -65900639 + GA-rich Low_complexity Low_complexity 3 166 0 2768 22 0 0 chr4 118388369 118388724 -65899938 + L1PA3 LINE L1 5827 6181 0 21 36 0 0 chr4 118389041 118389069 -65899593 + AT_rich Low_complexity Low_complexity 1 28 0 303 296 69 18 chr4 118389498 118389677 -65898985 + MIR SINE MIR 7 192 -67 398 344 40 28 chr4 118390171 118390421 -65898241 + MIR SINE MIR 10 262 0 414 320 162 31 chr4 118390781 118391482 -65897180 + L2 LINE L2 2516 3312 -1 1109 264 28 12 chr4 118391897 118392223 -65896439 + MLT1E2 LTR MaLR 296 626 0 2062 230 24 64 chr4 118392223 118392849 -65895813 + MLT1E2-int LTR MaLR 1 601 -770 362 274 11 11 chr4 118393155 118393250 -65895412 + MLT1E2-int LTR MaLR 793 887 -484 217 212 172 30 chr4 118393578 118393677 -65894985 + MIR SINE MIR 148 260 -2 4153 188 40 8 chr4 118394724 118395589 -65893073 - L1MD1 LINE L1 0 6242 5350 193 348 139 9 chr4 118395917 118396032 -65892630 + L2 LINE L2 3143 3272 0 323 339 57 62 chr4 118396078 118396447 -65892215 - L2 LINE L2 -1 3312 2946 267 252 170 75 chr4 118396971 118397118 -65891544 + MER5B DNA MER1_type 12 172 -6 2042 116 3 26 chr4 118397223 118397525 -65891137 + AluSx SINE Alu 2 296 -16 286 91 159 0 chr4 118397610 118397654 -65891008 + L1M4c LINE L1 19 69 -6315 5810 168 29 45 chr4 118397664 118398943 -65889719 + L1M4c LINE L1 414 1673 -4711 2034 112 28 7 chr4 118398943 118399230 -65889432 + AluSx SINE Alu 8 300 -12 465 141 50 50 chr4 118399231 118399352 -65889310 + L1M4c LINE L1 1891 2011 -4373 * 12214 133 98 36 chr4 118399353 118400029 -65888633 - Tigger1 DNA MER2_type -2 2416 1783 2192 115 26 0 chr4 118400029 118400334 -65888328 - AluSq SINE Alu 0 313 1 12214 133 98 36 chr4 118400334 118401933 -65886729 - Tigger1 DNA MER2_type -635 1783 1 2283 197 30 49 chr4 118401933 118402414 -65886248 + L1M4c LINE L1 2009 2452 -3930 702 208 0 0 chr4 118402414 118402539 -65886123 - FLAM_A SINE Alu -8 125 1 2283 197 30 49 chr4 118402539 118402963 -65885699 + L1M4c LINE L1 2452 2883 -3499 1045 168 20 11 chr4 118402974 118403204 -65885458 + L1MB3 LINE L1 5957 6178 0 891 205 14 74 chr4 118403290 118403505 -65885157 - MLT1A2 LTR MaLR 0 374 173 310 151 19 0 chr4 118403502 118403555 -65885107 - MLT1A2 LTR MaLR -336 54 1 * 321 135 0 0 chr4 118403682 118403734 -65884928 + (TC)n Simple_repeat Simple_repeat 2 53 0 711 303 50 12 chr4 118403810 118404051 -65884611 + MIR SINE MIR 9 258 -4 364 295 158 16 chr4 118404147 118404337 -65884325 - MIR SINE MIR -17 245 29 532 218 45 6 chr4 118405007 118405163 -65883499 - MER96B DNA MER1_type? 0 417 256 241 269 65 19 chr4 118405877 118405985 -65882677 + HAL1 LINE L1 2250 2362 -145 22 0 0 0 chr4 118406641 118406663 -65881999 + AT_rich Low_complexity Low_complexity 1 22 0 222 37 0 0 chr4 118407089 118407116 -65881546 + (CA)n Simple_repeat Simple_repeat 1 27 0 464 239 103 0 chr4 118409138 118409255 -65879407 + MIR SINE MIR 77 205 -57 221 255 20 0 chr4 118409635 118409686 -65878976 + MIR SINE MIR 195 246 -16 30 27 0 0 chr4 118410446 118410483 -65878179 + AT_rich Low_complexity Low_complexity 1 37 0 657 212 169 5 chr4 118411935 118412124 -65876538 + MER58A DNA MER1_type 4 223 -1 325 197 30 0 chr4 118412175 118412241 -65876421 + MLT1I LTR MaLR 57 124 -285 2051 103 20 10 chr4 118412739 118413040 -65875622 - AluSg SINE Alu -6 304 1 2015 129 4 0 chr4 118413233 118413511 -65875151 + AluSg SINE Alu 1 279 -31 206 210 161 0 chr4 118413764 118413826 -65874836 + MIR SINE MIR 177 248 -14 1368 119 136 4 chr4 118415369 118415605 -65873057 + MER44D DNA MER2_type 282 603 -2 768 371 93 12 chr4 118417548 118418201 -65870461 - L2 LINE L2 -487 2827 2122 482 213 202 27 chr4 118418223 118418406 -65870256 - MER58C DNA MER1_type 0 215 1 1661 109 86 0 chr4 118418628 118418884 -65869778 + AluSg1 SINE Alu 16 293 -16 769 191 18 124 chr4 118419286 118419511 -65869151 + MER20 DNA MER1_type 1 201 -18 1073 187 110 13 chr4 118422635 118422930 -65865732 - MLT1E3 LTR MaLR -2 622 258 518 227 60 8 chr4 118422934 118423147 -65865515 - MLT1E1 LTR MaLR -354 300 7 1907 154 52 32 chr4 118424113 118424515 -65864147 - MER95 LTR ERV -16 415 6 278 133 0 0 chr4 118424542 118424587 -65864075 + L2 LINE L2 3269 3313 0 202 225 135 90 chr4 118424823 118424912 -65863750 - MER5A DNA MER1_type -1 188 96 963 207 56 11 chr4 118424919 118425185 -65863477 + MER33 DNA MER1_type 42 319 -5 203 272 49 37 chr4 118425199 118425280 -65863382 - MER5A DNA MER1_type -104 85 4 316 329 73 24 chr4 118425909 118426073 -65862589 - MIR3 SINE MIR -6 202 31 2168 126 0 0 chr4 118426433 118426734 -65861928 - AluSg SINE Alu -9 301 1 1033 159 75 35 chr4 118426822 118427049 -65861613 + MER46A DNA MER2_type 1 236 0 24 77 0 0 chr4 118427525 118427577 -65861085 + AT_rich Low_complexity Low_complexity 1 52 0 22 56 0 0 chr4 118428003 118428039 -65860623 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr4 118428108 118428137 -65860525 + AT_rich Low_complexity Low_complexity 1 29 0 200 153 42 14 chr4 118428285 118428357 -65860305 + (TA)n Simple_repeat Simple_repeat 2 75 0 21 0 0 0 chr4 118428392 118428413 -65860249 + AT_rich Low_complexity Low_complexity 1 21 0 798 229 104 76 chr4 118429905 118430442 -65858220 - Charlie7 DNA MER1_type -75 2537 1986 253 194 90 0 chr4 118430570 118430637 -65858025 - Charlie7 DNA MER1_type -643 1969 1897 2242 77 14 20 chr4 118430655 118430952 -65857710 + AluY SINE Alu 1 295 -16 244 178 0 22 chr4 118430957 118431002 -65857660 - Charlie7 DNA MER1_type -787 1825 1782 2227 112 32 13 chr4 118431138 118431514 -65857148 - L1MA5A LINE L1 -5 6292 5910 457 204 142 57 chr4 118431514 118431690 -65856972 - Charlie7 DNA MER1_type -2421 191 1 1728 171 48 3 chr4 118431847 118432140 -65856522 - AluSx SINE Alu -5 307 2 321 281 0 0 chr4 118432520 118432609 -65856053 + MIR SINE MIR 120 208 -54 212 182 45 0 chr4 118432627 118432671 -65855991 + (TTG)n Simple_repeat Simple_repeat 2 47 0 627 237 133 28 chr4 118432807 118433018 -65855644 - MIR SINE MIR 0 262 30 2423 64 0 3 chr4 118434425 118434723 -65853939 - AluY SINE Alu -9 302 6 24 32 0 0 chr4 118436565 118436596 -65852066 + AT_rich Low_complexity Low_complexity 1 31 0 225 0 0 0 chr4 118437212 118437237 -65851425 + (TG)n Simple_repeat Simple_repeat 2 26 0 22 35 0 0 chr4 118438138 118438167 -65850495 + AT_rich Low_complexity Low_complexity 1 29 0 210 214 0 56 chr4 118438998 118439087 -65849575 + (TTTAA)n Simple_repeat Simple_repeat 4 87 0 396 0 0 0 chr4 118439219 118439263 -65849399 + (CA)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr4 118439480 118439501 -65849161 + AT_rich Low_complexity Low_complexity 1 21 0 2345 175 40 17 chr4 118439726 118440247 -65848415 - Charlie1 DNA MER1_type -20 2741 2209 22 35 0 0 chr4 118440299 118440328 -65848334 + AT_rich Low_complexity Low_complexity 1 29 0 540 286 5 107 chr4 118441112 118441336 -65847326 + L2 LINE L2 3072 3272 0 787 197 29 87 chr4 118442058 118442141 -65846521 + L1MC5 LINE L1 7604 7690 -271 1817 111 62 24 chr4 118442141 118442429 -65846233 + AluSx SINE Alu 1 299 -13 787 197 29 87 chr4 118442429 118442690 -65845972 + L1MC5 LINE L1 7690 7928 -33 327 298 16 24 chr4 118443003 118443127 -65845535 + LTR16C LTR ERVL 285 407 -84 2088 107 78 23 chr4 118443239 118443584 -65845078 - THE1B LTR MaLR 0 364 1 267 31 0 0 chr4 118443722 118443754 -65844908 + (TG)n Simple_repeat Simple_repeat 1 32 0 1387 234 26 47 chr4 118443755 118444135 -65844527 - MLT1F LTR MaLR -170 372 1 200 167 21 0 chr4 118444580 118444628 -65844034 + (TAG)n Simple_repeat Simple_repeat 1 49 0 22 88 0 0 chr4 118445945 118446002 -65842660 + AT_rich Low_complexity Low_complexity 1 57 0 215 239 0 42 chr4 118446259 118446330 -65842332 + T-rich Low_complexity Low_complexity 2 69 0 216 0 0 0 chr4 118448033 118448057 -65840605 + (TTTAA)n Simple_repeat Simple_repeat 3 26 0 2029 108 0 40 chr4 118448057 118448354 -65840308 - AluSg SINE Alu -25 285 1 2958 261 30 36 chr4 118448354 118449329 -65839333 - L1MEc LINE L1 -5392 1004 36 1539 264 43 4 chr4 118449330 118449796 -65838866 - L1M4 LINE L1 -2293 3853 3370 365 271 57 14 chr4 118449843 118449983 -65838679 - L2 LINE L2 -1527 1787 1642 428 302 212 19 chr4 118450546 118450957 -65837705 - L2 LINE L2 -337 2977 2488 275 332 195 15 chr4 118450928 118451133 -65837529 + MIR SINE MIR 21 262 0 * 202 311 81 43 chr4 118451125 118451286 -65837376 + L2 LINE L2 2593 2759 -555 * 484 225 212 7 chr4 118451386 118451537 -65837125 - MER5A DNA MER1_type -1 188 7 245 324 9 46 chr4 118451607 118451715 -65836947 + L2 LINE L2 2945 3048 -224 24 0 0 0 chr4 118452443 118452467 -65836195 + AT_rich Low_complexity Low_complexity 1 24 0 1585 214 32 30 chr4 118454883 118455252 -65833410 - MLT1A2 LTR MaLR -4 370 1 1859 207 89 52 chr4 118455278 118455781 -65832881 - MLT1A2-int LTR MaLR -16 1719 1198 323 311 9 0 chr4 118455811 118455917 -65832745 - MLT1A2-int LTR MaLR -956 779 673 3243 213 54 14 chr4 118456025 118456734 -65831928 - MLT1A2-int LTR MaLR -629 742 6 4601 206 82 60 chr4 118456738 118457275 -65831387 + L1M4 LINE L1 2431 2955 -3191 342 0 0 0 chr4 118457275 118457313 -65831349 + (CA)n Simple_repeat Simple_repeat 2 39 0 4601 206 82 60 chr4 118457313 118457364 -65831298 + L1M4 LINE L1 2955 3003 -3143 1576 165 0 0 chr4 118457364 118457606 -65831056 - AluJb SINE Alu -70 242 1 4601 206 82 60 chr4 118457606 118458693 -65829969 + L1M4 LINE L1 3003 4143 -2003 680 323 58 9 chr4 118458694 118458920 -65829742 - MIR SINE MIR -19 243 7 21 0 0 0 chr4 118460158 118460179 -65828483 + AT_rich Low_complexity Low_complexity 1 21 0 403 141 0 0 chr4 118460228 118460299 -65828363 + L1MA3 LINE L1 6234 6304 -1 28 48 0 0 chr4 118461135 118461177 -65827485 + AT_rich Low_complexity Low_complexity 1 42 0 22 56 0 0 chr4 118461618 118461654 -65827008 + AT_rich Low_complexity Low_complexity 1 36 0 7605 29 2 0 chr4 118462333 118463603 -65825059 - L1PA5 LINE L1 -1 6153 4883 692 209 175 10 chr4 118463828 118464034 -65824628 + HsTC2 DNA Tc2 1282 1697 -201 650 245 44 60 chr4 118464045 118464343 -65824319 + HsTC2 DNA Tc2 1591 1883 -15 2681 36 0 0 chr4 118465064 118465368 -65823294 - AluY SINE Alu -7 304 1 190 330 176 0 chr4 118466492 118466583 -65822079 - L2 LINE L2 -16 3297 3191 316 215 81 81 chr4 118466889 118467150 -65821512 - L1ME4a LINE L1 -209 5912 5652 23 0 0 0 chr4 118468778 118468801 -65819861 + AT_rich Low_complexity Low_complexity 1 23 0 221 0 0 33 chr4 118469456 118469486 -65819176 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr4 118469578 118469599 -65819063 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr4 118470339 118470374 -65818288 + AT_rich Low_complexity Low_complexity 1 35 0 1487 158 127 0 chr4 118471020 118471280 -65817382 + AluJb SINE Alu 1 293 -19 2295 107 0 0 chr4 118471537 118471836 -65816826 - AluSx SINE Alu -13 299 1 2190 108 39 28 chr4 118472039 118472399 -65816263 - THE1B LTR MaLR 0 364 1 11737 97 1 2 chr4 118472399 118473981 -65814681 - THE1B-int LTR MaLR 0 1580 1 2210 129 20 28 chr4 118473981 118474338 -65814324 - THE1B LTR MaLR -10 354 1 1169 230 47 77 chr4 118475413 118475713 -65812949 - MLT1A2 LTR MaLR 0 467 174 2175 92 7 7 chr4 118475713 118476008 -65812654 - AluSq SINE Alu -14 299 5 1169 230 47 77 chr4 118476008 118476178 -65812484 - MLT1A2 LTR MaLR -293 174 1 283 213 71 71 chr4 118476351 118476478 -65812184 - L1MC4 LINE L1 -2 8040 7914 2211 101 7 3 chr4 118476497 118476794 -65811868 + AluSp SINE Alu 1 298 -15 554 69 69 13 chr4 118476794 118476953 -65811709 + (TA)n Simple_repeat Simple_repeat 1 168 0 1898 264 75 16 chr4 118476976 118477737 -65810925 - L1MC4 LINE L1 -251 7791 6986 759 250 10 21 chr4 118477724 118477916 -65810746 - L1ME2 LINE L1 0 6164 5975 * 370 277 18 0 chr4 118477921 118478033 -65810629 - L1MC4a LINE L1 -884 6924 6811 319 347 46 19 chr4 118478187 118478403 -65810259 - L1M4 LINE L1 -1128 5018 4797 2416 113 0 3 chr4 118478787 118479141 -65809521 - L1PA16 LINE L1 -9 6157 5805 242 56 28 0 chr4 118479522 118479558 -65809104 + (TA)n Simple_repeat Simple_repeat 2 38 0 22694 33 0 0 chr4 118480504 118484054 -65804608 + L1PA4 LINE L1 2590 6147 -8 373 311 47 42 chr4 118484852 118485045 -65803617 - L2 LINE L2 0 3313 3120 2593 37 0 40 chr4 118485396 118485718 -65802944 - AluY SINE Alu -2 309 1 227 347 89 0 chr4 118486501 118486625 -65802037 + MLT1I LTR MaLR 37 171 -238 543 265 87 78 chr4 118488279 118488588 -65800074 + MLT1I LTR MaLR 98 409 0 23 0 0 0 chr4 118488736 118488759 -65799903 + AT_rich Low_complexity Low_complexity 1 23 0 473 308 83 21 chr4 118488940 118489167 -65799495 - MIR SINE MIR -2 260 20 22 0 0 0 chr4 118489391 118489413 -65799249 + AT_rich Low_complexity Low_complexity 1 22 0 260 229 76 19 chr4 118489727 118489832 -65798830 + MER103 DNA DNA 46 156 -10 482 298 66 30 chr4 118491677 118491778 -65796884 + MIR SINE MIR 50 146 -116 2101 143 0 0 chr4 118491778 118492086 -65796576 + AluSx SINE Alu 1 308 -4 482 298 66 30 chr4 118492086 118492182 -65796480 + MIR SINE MIR 146 254 -8 1909 156 16 35 chr4 118492210 118492581 -65796081 - THE1B LTR MaLR 0 364 1 11408 93 15 2 chr4 118492581 118494140 -65794522 - THE1B-int LTR MaLR 0 1580 1 1618 158 50 55 chr4 118494145 118494506 -65794156 - THE1B LTR MaLR -5 359 1 233 127 36 73 chr4 118495145 118495200 -65793462 - MIR SINE MIR -113 149 97 204 324 106 21 chr4 118495359 118495501 -65793161 + L3b LINE CR1 1216 1369 -214 3504 135 44 6 chr4 118495907 118496455 -65792207 + LTR1B LTR ERV1 1 569 -257 2406 101 30 15 chr4 118496455 118496791 -65791871 - THE1B LTR MaLR 0 364 24 766 169 16 20 chr4 118496794 118496958 -65791704 + LTR1B LTR ERV1 579 826 0 501 307 51 59 chr4 118496992 118497190 -65791472 + MIR SINE MIR 14 206 -56 253 258 61 22 chr4 118497294 118497399 -65791263 + MIR SINE MIR 68 177 -65 200 211 0 0 chr4 118498561 118498599 -65790063 - L2 LINE L2 -15 3298 3261 314 288 131 58 chr4 118498632 118498823 -65789839 - MIR SINE MIR -54 208 4 784 269 33 29 chr4 118500358 118500603 -65788059 + MIR SINE MIR 1 246 -16 478 340 77 10 chr4 118500608 118500817 -65787845 - MIR SINE MIR -1 261 39 23 0 0 0 chr4 118500913 118500936 -65787726 + AT_rich Low_complexity Low_complexity 1 23 0 223 189 0 0 chr4 118500943 118500980 -65787682 + L2 LINE L2 3220 3256 -16 810 294 32 12 chr4 118503310 118503562 -65785100 + MIR SINE MIR 1 257 -5 22 35 0 0 chr4 118503734 118503763 -65784899 + AT_rich Low_complexity Low_complexity 1 29 0 225 0 0 0 chr4 118503837 118503862 -65784800 + (TG)n Simple_repeat Simple_repeat 2 26 0 27 96 0 0 chr4 118504135 118504218 -65784444 + AT_rich Low_complexity Low_complexity 1 83 0 2105 120 32 0 chr4 118504220 118504504 -65784158 + AluSx SINE Alu 2 294 -18 26 0 0 0 chr4 118505878 118505904 -65782758 + AT_rich Low_complexity Low_complexity 1 26 0 29 0 0 0 chr4 118505973 118506002 -65782660 + AT_rich Low_complexity Low_complexity 1 29 0 192 370 59 15 chr4 118507731 118507866 -65780796 - L3b LINE CR1 -119 1464 1324 21 0 0 0 chr4 118507974 118507995 -65780667 + AT_rich Low_complexity Low_complexity 1 21 0 622 161 9 0 chr4 118508463 118508575 -65780087 - Charlie1b DNA MER1_type -1 522 410 1936 146 10 0 chr4 118508578 118508866 -65779796 + AluJb SINE Alu 6 296 -16 22 0 0 0 chr4 118508886 118508908 -65779754 + AT_rich Low_complexity Low_complexity 1 22 0 1440 172 51 104 chr4 118508908 118509112 -65779550 - Charlie1b DNA MER1_type -2285 476 263 2035 121 3 10 chr4 118509112 118509401 -65779261 + AluSx SINE Alu 3 289 -23 1440 172 51 104 chr4 118509401 118509667 -65778995 - Charlie1b DNA MER1_type -2498 263 31 613 311 35 0 chr4 118509926 118510154 -65778508 + MIR SINE MIR 10 245 -17 249 33 0 0 chr4 118510539 118510569 -65778093 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 375 337 91 32 chr4 118510827 118511014 -65777648 + MIR3 SINE MIR 8 205 -3 182 133 0 22 chr4 118512882 118512927 -65775735 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 332 75 0 19 chr4 118513557 118513610 -65775052 + (GA)n Simple_repeat Simple_repeat 1 52 0 1713 234 59 77 chr4 118515756 118515819 -65772843 + MLT1F1 LTR MaLR 1 64 -503 2359 103 0 0 chr4 118515819 118516131 -65772531 + AluSx SINE Alu 1 312 0 1713 234 59 77 chr4 118516131 118516639 -65772023 + MLT1F1 LTR MaLR 64 562 -5 4361 117 49 4 chr4 118516676 118517395 -65771267 - Tigger3(Golem) DNA MER2_type -1 3028 2278 513 217 19 0 chr4 118517387 118517493 -65771169 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 237 234 26 39 chr4 118517909 118517986 -65770676 + MLT1H LTR MaLR 99 174 -375 398 240 31 47 chr4 118518164 118518293 -65770369 + MLT1H LTR MaLR 421 547 -2 236 378 49 7 chr4 118518528 118518671 -65769991 - MIR SINE MIR -111 151 3 842 132 63 58 chr4 118518967 118519141 -65769521 + MLT1B LTR MaLR 1 175 -215 203 156 0 0 chr4 118519157 118519189 -65769473 + CT-rich Low_complexity Low_complexity 2 33 0 465 286 0 0 chr4 118519198 118519310 -65769352 + MLT1B LTR MaLR 194 305 -85 512 263 147 28 chr4 118569345 118569672 -65718990 - L1M4 LINE L1 -1845 4301 3936 628 283 83 5 chr4 118570076 118570281 -65718381 + MIR SINE MIR 5 225 -37 1123 153 20 0 chr4 118570282 118570485 -65718177 + L1PA16 LINE L1 5959 6165 -1 1938 146 0 0 chr4 118570523 118570798 -65717864 + AluSx SINE Alu 1 275 -37 913 174 24 6 chr4 118570904 118571071 -65717591 - MER1B DNA MER1_type -126 171 2 274 264 33 11 chr4 118571106 118571197 -65717465 - MLT1K LTR MaLR -115 473 381 1335 53 0 0 chr4 118571538 118571707 -65716955 - L1PA2 LINE L1 0 6155 5987 892 20 0 0 chr4 118571707 118571809 -65716853 + L1PA2 LINE L1 5784 5885 -270 8739 193 49 9 chr4 118572401 118573703 -65714959 + L1M1 LINE L1 1973 3222 -4343 2036 131 3 0 chr4 118573703 118574040 -65714622 + AluSx SINE Alu 1 338 0 8739 193 49 9 chr4 118574040 118575466 -65713196 + L1M1 LINE L1 3222 4814 -2751 21 0 0 0 chr4 118575788 118575809 -65712853 + AT_rich Low_complexity Low_complexity 1 21 0 280 0 50 0 chr4 118576306 118576346 -65712316 + (GA)n Simple_repeat Simple_repeat 2 43 0 21 57 0 0 chr4 118577014 118577049 -65711613 + AT_rich Low_complexity Low_complexity 1 35 0 1223 231 50 58 chr4 118578012 118578411 -65710251 - MSTD LTR MaLR 0 396 1 22 35 0 0 chr4 118578461 118578490 -65710172 + AT_rich Low_complexity Low_complexity 1 29 0 515 214 245 65 chr4 118578737 118579027 -65709635 - L1ME3A LINE L1 -219 5951 5610 24 32 0 0 chr4 118579194 118579225 -65709437 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr4 118579469 118579498 -65709164 + AT_rich Low_complexity Low_complexity 1 29 0 1159 71 0 0 chr4 118579768 118579908 -65708754 - AluSg SINE Alu -170 140 1 403 320 146 0 chr4 118580439 118580617 -65708045 + MIR SINE MIR 58 261 -1 1140 265 40 19 chr4 118580750 118581091 -65707571 + MLT1I LTR MaLR 57 389 -20 342 350 8 8 chr4 118582138 118582255 -65706407 - L2 LINE L2 -22 3291 3175 180 234 0 0 chr4 118582938 118582985 -65705677 + (TG)n Simple_repeat Simple_repeat 1 47 0 383 264 16 50 chr4 118584059 118584180 -65704482 + L2 LINE L2 3141 3257 -15 1114 148 36 4 chr4 118584740 118584963 -65703699 + MER33 DNA MER1_type 1 219 -98 1226 240 179 58 chr4 118584980 118585658 -65703004 + L1MC4 LINE L1 7280 8039 -3 206 413 12 6 chr4 118585864 118586024 -65702638 - L2 LINE L2 -340 2973 2813 21 0 0 0 chr4 118586272 118586293 -65702369 + AT_rich Low_complexity Low_complexity 1 21 0 208 364 30 10 chr4 118586303 118586402 -65702260 + L2 LINE L2 2888 2988 -325 460 331 87 25 chr4 118586826 118587194 -65701468 - L1M4 LINE L1 -1194 4952 4562 551 316 84 30 chr4 118588720 118589090 -65699572 + MLT1I LTR MaLR 1 390 -19 21 0 0 0 chr4 118590738 118590759 -65697903 + AT_rich Low_complexity Low_complexity 1 21 0 41924 39 25 4 chr4 118592241 118597517 -65691145 - L1P LINE L1 -757 5389 2 516 271 52 26 chr4 118597521 118597750 -65690912 - L1M4 LINE L1 -785 5361 5127 313 180 20 120 chr4 118597769 118597869 -65690793 + L1MC4 LINE L1 6614 6703 -1339 489 284 77 21 chr4 118597986 118598053 -65690609 - L1M4 LINE L1 -1225 4921 4859 1722 260 85 29 chr4 118598053 118598676 -65689986 - MLT2F LTR ERVL -2 661 4 489 284 77 21 chr4 118598676 118598893 -65689769 - L1M4 LINE L1 -1287 4859 4622 22 56 0 0 chr4 118599849 118599885 -65688777 + AT_rich Low_complexity Low_complexity 1 36 0 203 377 13 0 chr4 118599910 118599987 -65688675 + L3b LINE CR1 1395 1472 -111 21 71 0 0 chr4 118600612 118600654 -65688008 + AT_rich Low_complexity Low_complexity 1 42 0 42 36 0 0 chr4 118600816 118600872 -65687790 + AT_rich Low_complexity Low_complexity 1 56 0 510 188 0 0 chr4 118601988 118602089 -65686573 + GA-rich Low_complexity Low_complexity 4 104 0 338 350 21 25 chr4 118602769 118602948 -65685714 + MER5A DNA MER1_type 2 188 -1 28 0 0 0 chr4 118603370 118603398 -65685264 + AT_rich Low_complexity Low_complexity 1 28 0 535 204 122 122 chr4 118603608 118604011 -65684651 - MER57A LTR ERV1 0 403 1 213 94 0 0 chr4 118604201 118604233 -65684429 + (TG)n Simple_repeat Simple_repeat 1 32 0 342 61 0 0 chr4 118604233 118604282 -65684380 + (GA)n Simple_repeat Simple_repeat 2 50 0 249 108 0 0 chr4 118604608 118604645 -65684017 + (CA)n Simple_repeat Simple_repeat 2 38 0 219 206 27 110 chr4 118605095 118605168 -65683494 + L2 LINE L2 1237 1303 -2011 1309 283 138 17 chr4 118605171 118605868 -65682794 - L2 LINE L2 -80 3233 2430 1149 278 108 25 chr4 118605868 118606426 -65682236 + L2 LINE L2 1333 1936 -1378 8377 130 24 8 chr4 118606542 118608967 -65679695 + L1MA3 LINE L1 3840 6302 -3 21 0 0 0 chr4 118608967 118608988 -65679674 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr4 118609522 118609554 -65679108 + AT_rich Low_complexity Low_complexity 1 32 0 188 372 105 0 chr4 118609572 118609658 -65679004 - L2 LINE L2 -2 3270 3176 393 295 134 0 chr4 118610749 118610928 -65677734 - MIR SINE MIR -46 216 15 190 182 0 0 chr4 118611060 118611093 -65677569 + L2 LINE L2 2440 2472 -842 402 283 18 42 chr4 118611202 118611368 -65677294 + MLT1H LTR MaLR 203 364 -185 240 258 108 21 chr4 118611403 118611496 -65677166 + MLT1I LTR MaLR 276 376 -33 335 353 128 19 chr4 118611633 118612001 -65676661 + L2 LINE L2 2570 2977 -337 1417 195 65 109 chr4 118612181 118612254 -65676408 - MLT1C LTR MaLR -2 465 390 4809 120 9 1 chr4 118612254 118612994 -65675668 + L1PA13 LINE L1 5418 6163 0 1417 195 65 109 chr4 118612994 118613397 -65675265 - MLT1C LTR MaLR -77 390 10 432 338 137 0 chr4 118614442 118614658 -65674004 + MIR SINE MIR 10 262 0 37 0 0 0 chr4 118614849 118614886 -65673776 + AT_rich Low_complexity Low_complexity 1 37 0 438 509 85 13 chr4 118615141 118615459 -65673203 - MER58B DNA MER1_type 0 341 1 2238 101 0 14 chr4 118616819 118617116 -65671546 + AluSx SINE Alu 3 295 -17 1914 126 0 0 chr4 118617947 118618210 -65670452 - AluY SINE Alu -23 288 26 181 217 152 0 chr4 118618655 118618701 -65669961 + L3 LINE CR1 1044 1096 -481 1867 192 50 101 chr4 118620094 118620677 -65667985 + MLT2B3 LTR ERVL 1 553 -1 228 130 0 43 chr4 118620677 118620717 -65667945 + MLT2B3 LTR ERVL 517 554 0 17435 179 87 14 chr4 118621169 118625041 -65663621 + L1M1 LINE L1 16 4169 -3396 279 54 0 0 chr4 118625041 118625078 -65663584 + (T)n Simple_repeat Simple_repeat 1 37 0 1492 85 0 27 chr4 118625252 118625475 -65663187 - L1PA3 LINE L1 0 6155 5939 297 51 0 0 chr4 118625628 118625667 -65662995 + (T)n Simple_repeat Simple_repeat 1 39 0 1807 37 0 0 chr4 118625848 118626062 -65662600 - L1PA3 LINE L1 -3 6152 5939 1078 215 11 18 chr4 118626062 118626341 -65662321 + L1M1 LINE L1 4157 4433 -3132 482 283 73 93 chr4 118626414 118626799 -65661863 + HAL1 LINE L1 529 905 -1602 390 262 12 83 chr4 118626878 118627046 -65661616 + HAL1 LINE L1 1058 1213 -1294 213 149 0 21 chr4 118627047 118627094 -65661568 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 913 255 68 13 chr4 118627162 118627397 -65661265 + MER74A LTR ERVL 54 301 -257 3583 168 7 2 chr4 118627405 118627994 -65660668 - LTR39 LTR ERV1 -7 776 185 * 4190 138 7 61 chr4 118627993 118628748 -65659914 - MER50 LTR ERV1 -20 714 1 1078 147 11 26 chr4 118628748 118628938 -65659724 - LTR39 LTR ERV1 -596 187 1 344 246 51 36 chr4 118628938 118629075 -65659587 + MER74A LTR ERVL 299 437 -121 1442 264 84 64 chr4 118629167 118630199 -65658463 + HAL1 LINE L1 1209 2261 -246 1358 264 107 55 chr4 118630246 118631330 -65657332 - L2 LINE L2 0 3313 2066 2352 82 3 10 chr4 118631638 118631943 -65656719 + AluY SINE Alu 1 303 -8 282 244 51 0 chr4 118632022 118632100 -65656562 - L2 LINE L2 -1267 2047 1966 392 331 159 21 chr4 118632338 118632710 -65655952 - L1M4 LINE L1 -1261 4885 4463 306 224 138 0 chr4 118633193 118633309 -65655353 + L1MEd LINE L1 709 840 -5279 463 257 47 29 chr4 118633403 118633574 -65655088 - L2 LINE L2 -913 2401 2228 243 217 67 0 chr4 118633791 118633851 -65654811 + MLT1L LTR MaLR 342 405 -210 280 315 74 44 chr4 118634229 118634594 -65654068 + L1M4 LINE L1 4765 5140 -1006 4432 134 15 14 chr4 118635263 118636861 -65651801 - L1PA16 LINE L1 -9 6157 4496 2284 126 0 42 chr4 118636861 118637183 -65651479 - THE1B LTR MaLR 0 364 58 2112 102 0 0 chr4 118637183 118637488 -65651174 - AluY SINE Alu 0 305 1 2284 126 0 42 chr4 118637488 118637544 -65651118 - THE1B LTR MaLR -306 58 1 4432 134 15 14 chr4 118637544 118637622 -65651040 - L1PA16 LINE L1 -1670 4496 4420 1914 136 107 9 chr4 118637625 118637970 -65650692 + MSTA LTR MaLR 19 397 -31 5212 195 23 96 chr4 118638034 118638826 -65649836 - L1M4 LINE L1 -1707 4439 3591 2788 86 17 66 chr4 118638826 118639293 -65649369 + MLT2A1 LTR ERVL 1 444 0 5212 195 23 96 chr4 118639293 118639373 -65649289 - L1M4 LINE L1 -2555 3591 3507 1677 196 7 0 chr4 118639373 118639708 -65648954 - AluJb SINE Alu 0 312 1 5212 195 23 96 chr4 118639708 118640544 -65648118 - L1M4 LINE L1 -2639 3507 2855 2682 224 70 70 chr4 118642020 118643184 -65645478 + L1MDa LINE L1 1001 2165 -4375 250 228 119 50 chr4 118643176 118643252 -65645410 + L1ME1 LINE L1 5834 5920 -246 * 2186 132 3 0 chr4 118643252 118643563 -65645099 - AluSx SINE Alu 0 312 1 250 228 119 50 chr4 118643563 118643587 -65645075 + L1ME1 LINE L1 5920 5941 -225 225 330 81 54 chr4 118643589 118643847 -65644815 + L2 LINE L2 3026 3290 -23 357 24 0 0 chr4 118643849 118643891 -65644771 + (TC)n Simple_repeat Simple_repeat 2 43 0 243 0 0 0 chr4 118643890 118643917 -65644745 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 1985 150 0 7 chr4 118643919 118644219 -65644443 - AluSx SINE Alu -14 298 1 1640 212 13 28 chr4 118644316 118644712 -65643950 - MLT1B LTR MaLR 0 390 1 1161 191 30 109 chr4 118644717 118645110 -65643552 - MLT1A1 LTR MaLR 0 365 4 651 325 45 8 chr4 118645113 118645356 -65643306 - MIR SINE MIR -4 258 7 26 50 0 0 chr4 118646314 118646354 -65642308 + AT_rich Low_complexity Low_complexity 1 40 0 425 273 25 0 chr4 118647507 118647628 -65641034 + L2 LINE L2 2447 2570 -744 543 236 19 176 chr4 118647717 118648184 -65640478 + L2 LINE L2 2920 3313 0 1326 203 3 64 chr4 118648468 118648764 -65639898 + MLT2D LTR ERVL 137 414 0 567 294 82 10 chr4 118648823 118649017 -65639645 - MIR SINE MIR -4 258 51 857 333 107 40 chr4 118650968 118652049 -65636613 - L2 LINE L2 -203 3069 1931 1878 153 0 7 chr4 118652065 118652352 -65636310 + AluSx SINE Alu 3 287 -25 26 0 0 0 chr4 118652352 118652378 -65636284 + AT_rich Low_complexity Low_complexity 1 26 0 884 266 18 5 chr4 118652393 118652611 -65636051 - L1ME LINE L1 -479 5687 5467 448 182 78 78 chr4 118652607 118652643 -65636019 - L1MA10 LINE L1 -2 6332 5924 * 2003 137 142 11 chr4 118652643 118653016 -65635646 - MSTA LTR MaLR -4 424 3 485 265 65 39 chr4 118653016 118653246 -65635416 - L1ME1 LINE L1 -18 6148 5913 365 255 104 0 chr4 118653598 118653704 -65634958 - L1ME1 LINE L1 -518 5603 5487 194 0 39 0 chr4 118653727 118653753 -65634909 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr4 118654897 118654920 -65633742 + AT_rich Low_complexity Low_complexity 1 23 0 269 359 15 8 chr4 118655779 118655910 -65632752 - L2 LINE L2 0 3313 3182 1794 254 66 7 chr4 118656007 118656586 -65632076 + MLT1E3 LTR MaLR 3 624 0 1189 126 134 59 chr4 118657274 118657513 -65631149 - AluJb SINE Alu -45 267 11 744 327 19 4 chr4 118658542 118658799 -65629863 + MIR SINE MIR 2 262 0 2031 132 0 0 chr4 118659369 118659674 -65628988 - AluSg SINE Alu 0 305 1 246 260 0 14 chr4 118659674 118659747 -65628915 - MER5A DNA MER1_type -114 75 4 243 330 68 0 chr4 118659806 118659894 -65628768 + MIR SINE MIR 58 151 -111 336 257 43 29 chr4 118660191 118660331 -65628331 - L1P LINE L1 -1127 5019 4878 2127 123 3 0 chr4 118660561 118660861 -65627801 - AluSx SINE Alu -7 305 5 4704 68 18 3 chr4 118663903 118664920 -65623742 - MER11A LTR ERVK 0 1266 1 333 0 0 0 chr4 118666918 118666955 -65621707 + (CA)n Simple_repeat Simple_repeat 2 38 0 192 206 0 0 chr4 118667010 118667044 -65621618 + MIR SINE MIR 228 261 -1 1868 172 5 52 chr4 118667951 118668334 -65620328 + MLT1A1 LTR MaLR 1 365 0 282 280 43 11 chr4 118668336 118668429 -65620233 + MIR SINE MIR 3 98 -164 747 214 209 0 chr4 118668497 118668717 -65619945 - L1ME3A LINE L1 -4 6166 5901 1217 205 28 0 chr4 118668717 118668932 -65619730 + Tigger5 DNA MER2_type 1 221 -2102 * 2763 170 14 4 chr4 118668929 118669412 -65619250 + Tigger5 DNA MER2_type 1835 2322 -1 1515 270 59 13 chr4 118669413 118669939 -65618723 - L1ME3A LINE L1 -268 5902 5353 4073 21 0 0 chr4 118669943 118670417 -65618245 - L1PA2 LINE L1 -2 6153 5680 2146 99 20 0 chr4 118670721 118671024 -65617638 - AluSp SINE Alu -4 309 1 235 279 51 0 chr4 118671409 118671488 -65617174 + MLT1J2 LTR MaLR 353 435 -15 2070 122 10 0 chr4 118671667 118671971 -65616691 - AluSq SINE Alu -4 309 3 192 77 0 0 chr4 118672356 118672382 -65616280 + (A)n Simple_repeat Simple_repeat 1 26 0 2256 47 44 3 chr4 118672382 118672680 -65615982 + AluY SINE Alu 1 310 -1 1565 125 23 93 chr4 118672867 118673212 -65615450 + L1MA2 LINE L1 5984 6304 0 560 152 19 9 chr4 118673262 118673367 -65615295 - L1M2 LINE L1 -489 5811 5706 226 193 35 18 chr4 118673370 118673444 -65615218 + CT-rich Low_complexity Low_complexity 1 75 0 1929 149 18 21 chr4 118676068 118676403 -65612259 + MER1B DNA MER1_type 4 337 0 410 286 8 32 chr4 118679492 118679618 -65609044 - L2 LINE L2 0 3313 3191 356 286 101 21 chr4 118679762 118679951 -65608711 - L1ME3A LINE L1 -225 5928 5725 233 335 43 12 chr4 118679949 118680113 -65608549 - L1ME3A LINE L1 -632 5513 5345 * 363 247 42 77 chr4 118680127 118680439 -65608223 - L1ME3A LINE L1 -816 5313 5013 359 283 235 30 chr4 118680536 118681106 -65607556 - L1ME3A LINE L1 -1952 4177 3491 514 301 75 61 chr4 118681106 118681314 -65607348 - L1ME3A LINE L1 -5075 1044 840 372 127 28 0 chr4 118681314 118681385 -65607277 - L1PA16 LINE L1 -1 6165 6093 514 301 75 61 chr4 118681385 118681618 -65607044 - L1ME3A LINE L1 -5279 840 597 640 157 0 0 chr4 118682629 118682731 -65605931 + AluJo SINE Alu 32 133 -179 384 77 0 0 chr4 118682837 118682889 -65605773 + (TG)n Simple_repeat Simple_repeat 1 52 0 356 222 83 46 chr4 118682972 118683080 -65605582 + MIR SINE MIR 76 187 -75 21 57 0 0 chr4 118683306 118683341 -65605321 + AT_rich Low_complexity Low_complexity 1 35 0 1170 260 62 0 chr4 118683421 118683779 -65604883 - L1ME3A LINE L1 -119 6051 5672 345 179 71 0 chr4 118683826 118683910 -65604752 + L1MC4 LINE L1 6614 6703 -1339 259 276 46 0 chr4 118683929 118684016 -65604646 - L1ME3A LINE L1 -567 5603 5513 245 265 48 60 chr4 118684016 118684099 -65604563 + L2 LINE L2 3171 3252 -61 469 357 116 24 chr4 118684464 118684879 -65603783 - L2 LINE L2 -4 3309 2857 1047 157 0 12 chr4 118684948 118685114 -65603548 + AluJo SINE Alu 133 296 -16 387 342 49 23 chr4 118685196 118685541 -65603121 - L2 LINE L2 -589 2725 2372 181 328 69 52 chr4 118686151 118686325 -65602337 - L2 LINE L2 -418 2896 2720 24 0 0 0 chr4 118686599 118686623 -65602039 + AT_rich Low_complexity Low_complexity 1 24 0 200 216 0 0 chr4 118686665 118686702 -65601960 + T-rich Low_complexity Low_complexity 2 38 0 195 42 0 0 chr4 118688869 118688893 -65599769 + (TG)n Simple_repeat Simple_repeat 1 24 0 327 315 37 70 chr4 118689840 118690167 -65598495 - HAL1 LINE L1 -366 2141 1826 343 229 12 0 chr4 118690189 118690272 -65598390 - HAL1 LINE L1 -813 1694 1611 519 238 63 148 chr4 118690314 118690693 -65597969 - L2 LINE L2 -18 3295 2949 257 204 51 112 chr4 118690788 118690854 -65597808 - HAL1 LINE L1 -898 1609 1549 2488 71 0 0 chr4 118690854 118691163 -65597499 + AluY SINE Alu 2 310 -1 257 204 51 112 chr4 118691163 118691194 -65597468 - HAL1 LINE L1 -958 1549 1518 2425 93 0 3 chr4 118691453 118691764 -65596898 + AluY SINE Alu 1 310 -1 1819 234 85 37 chr4 118691832 118692852 -65595810 - L1ME1 LINE L1 -95 6071 4997 935 174 25 55 chr4 118692859 118693060 -65595602 - MER1B DNA MER1_type 0 339 145 2258 123 0 0 chr4 118695035 118695344 -65593318 - AluSg SINE Alu -1 309 1 191 111 0 28 chr4 118695421 118695457 -65593205 + (TTC)n Simple_repeat Simple_repeat 2 36 0 231 302 0 70 chr4 118695461 118695505 -65593157 - MIR SINE MIR -111 151 114 2664 89 17 8 chr4 118695505 118695866 -65592796 + THE1B LTR MaLR 1 364 0 231 302 0 70 chr4 118695866 118695907 -65592755 - MIR SINE MIR -148 114 72 283 343 58 0 chr4 118696323 118696460 -65592202 + L2 LINE L2 3169 3313 0 252 307 31 39 chr4 118696606 118696733 -65591929 + MIR SINE MIR 16 141 -121 3982 180 42 19 chr4 118696735 118699504 -65589158 + L1MA9 LINE L1 3392 6312 0 2278 110 0 0 chr4 118699659 118699969 -65588693 - AluSq SINE Alu -3 310 1 413 298 7 57 chr4 118701079 118701220 -65587442 - L2 LINE L2 0 3313 3180 * 524 277 117 26 chr4 118701189 118701420 -65587242 + MIR SINE MIR 11 262 0 418 311 30 18 chr4 118701423 118701590 -65587072 - L2 LINE L2 -134 3179 3011 1911 133 0 43 chr4 118701666 118701968 -65586694 - AluSx SINE Alu -23 289 1 2509 68 0 0 chr4 118703644 118703951 -65584711 - AluY SINE Alu -4 307 1 25 31 0 0 chr4 118704591 118704623 -65584039 + AT_rich Low_complexity Low_complexity 1 32 0 870 309 29 0 chr4 118705014 118705260 -65583402 + MIR SINE MIR 10 262 0 2101 144 33 28 chr4 118705643 118706005 -65582657 - THE1B LTR MaLR 0 364 1 11214 98 16 0 chr4 118706005 118707560 -65581102 - THE1B-int LTR MaLR 0 1580 1 1978 158 36 25 chr4 118707560 118707920 -65580742 - THE1B LTR MaLR 0 364 1 300 222 0 0 chr4 118708951 118709023 -65579639 + L1MA6 LINE L1 6229 6300 0 483 233 66 57 chr4 118709428 118709743 -65578919 - Charlie2 DNA MER1_type -276 2586 2246 460 221 18 9 chr4 118709755 118709868 -65578794 - L1MC4 LINE L1 0 8042 7929 1454 72 19 14 chr4 118710430 118710637 -65578025 - AluY SINE Alu 0 311 104 280 318 0 24 chr4 118713976 118714061 -65574601 - MIR SINE MIR -108 154 72 23 54 0 0 chr4 118717070 118717107 -65571555 + AT_rich Low_complexity Low_complexity 1 37 0 186 43 0 0 chr4 118717292 118717315 -65571347 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 401 305 86 43 chr4 118718593 118718780 -65569882 - MIR SINE MIR -9 253 59 21 0 0 0 chr4 118720751 118720772 -65567890 + AT_rich Low_complexity Low_complexity 1 21 0 323 304 9 17 chr4 118721040 118721155 -65567507 + MIR SINE MIR 99 212 -50 283 234 92 118 chr4 118721391 118721695 -65566967 - HAL1 LINE L1 0 2507 2212 221 293 0 0 chr4 118721702 118721760 -65566902 + (CA)n Simple_repeat Simple_repeat 1 58 0 1671 262 133 57 chr4 118721760 118722276 -65566386 - HAL1 LINE L1 -280 2227 1752 1990 150 0 7 chr4 118722276 118722755 -65565907 + AluSx SINE Alu 1 312 0 1671 262 133 57 chr4 118722755 118723369 -65565293 - HAL1 LINE L1 -755 1752 1011 798 310 107 30 chr4 118723383 118723977 -65564685 - L2 LINE L2 -2 3311 2665 2384 76 0 25 chr4 118724010 118724327 -65564335 + AluSg SINE Alu 1 309 -1 2879 302 165 20 chr4 118724420 118724659 -65564003 - L2 LINE L2 -400 2914 2711 784 286 19 8 chr4 118724659 118724918 -65563744 - MIR SINE MIR 0 262 1 2879 302 165 20 chr4 118724918 118726462 -65562200 - L2 LINE L2 -603 2711 872 322 317 68 34 chr4 118727390 118727595 -65561067 + L2 LINE L2 2699 2910 -404 1067 280 97 35 chr4 118727641 118728180 -65560482 + MLT1F1 LTR MaLR 1 567 0 829 262 11 0 chr4 118728237 118728428 -65560234 - MER58A DNA MER1_type -5 219 27 219 267 40 140 chr4 118728951 118729101 -65559561 + L2 LINE L2 3138 3272 0 22 0 0 0 chr4 118729968 118729990 -65558672 + AT_rich Low_complexity Low_complexity 1 22 0 231 286 57 29 chr4 118730045 118730185 -65558477 - L1ME4a LINE L1 -23 6098 5955 369 217 123 0 chr4 118730305 118730411 -65558251 + L2 LINE L2 3159 3277 -36 23 97 0 0 chr4 118730598 118730670 -65557992 + AT_rich Low_complexity Low_complexity 1 72 0 285 285 23 0 chr4 118730978 118731108 -65557554 - L1 LINE L1 -2354 3792 3660 241 278 0 0 chr4 118731578 118731632 -65557030 + MIR SINE MIR 54 107 -155 343 281 55 37 chr4 118731668 118731885 -65556777 - L1 LINE L1 -2813 3333 3113 25 31 0 0 chr4 118732946 118732978 -65555684 + AT_rich Low_complexity Low_complexity 1 32 0 2235 182 38 69 chr4 118732985 118733704 -65554958 - L1MA9 LINE L1 -24 6273 5622 1396 171 27 44 chr4 118734089 118734387 -65554275 - L1MB5 LINE L1 -13 6161 5869 2000 196 15 25 chr4 118734391 118734793 -65553869 + MER89 LTR ERV1 162 559 0 752 160 158 156 chr4 118735142 118735573 -65553089 - MSTB1 LTR MaLR 0 432 1 22 0 0 0 chr4 118735985 118736007 -65552655 + AT_rich Low_complexity Low_complexity 1 22 0 260 228 18 0 chr4 118736791 118736848 -65551814 - MLT1J LTR MaLR -344 167 110 330 256 66 33 chr4 118738148 118738269 -65550393 + MER5A DNA MER1_type 9 133 -56 414 0 0 0 chr4 118741559 118741605 -65547057 + (TG)n Simple_repeat Simple_repeat 2 47 0 2053 131 3 0 chr4 118742107 118742405 -65546257 - AluSx SINE Alu -13 299 1 186 103 0 0 chr4 118742442 118742471 -65546191 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 27 0 0 0 chr4 118743399 118743426 -65545236 + AT_rich Low_complexity Low_complexity 1 27 0 27 29 0 0 chr4 118743591 118743625 -65545037 + AT_rich Low_complexity Low_complexity 1 34 0 28 0 0 0 chr4 118743791 118743819 -65544843 + AT_rich Low_complexity Low_complexity 1 28 0 231 169 48 12 chr4 118746903 118746986 -65541676 + (TA)n Simple_repeat Simple_repeat 2 87 0 357 316 115 54 chr4 118747424 118747992 -65540670 - L2 LINE L2 -86 3186 2507 325 369 67 5 chr4 118748298 118748493 -65540169 - MIR SINE MIR -6 256 50 234 0 0 0 chr4 118748728 118748754 -65539908 + (TG)n Simple_repeat Simple_repeat 2 27 0 193 188 78 78 chr4 118748754 118748818 -65539844 - L2 LINE L2 -69 3244 3181 21 36 0 0 chr4 118749447 118749475 -65539187 + AT_rich Low_complexity Low_complexity 1 28 0 1751 211 32 56 chr4 118749644 118750198 -65538464 - MER34 LTR ERV1 0 542 2 278 280 24 64 chr4 118750507 118750632 -65538030 + L2 LINE L2 3153 3272 0 295 312 25 6 chr4 118751657 118751814 -65536848 - HAL1b LINE L1 -1 1347 1188 276 250 0 0 chr4 118751998 118752066 -65536596 + LTR40a LTR ERVL 1 68 -451 212 311 0 0 chr4 118752068 118752129 -65536533 + MIR SINE MIR 202 262 0 330 91 0 0 chr4 118752501 118752556 -65536106 + (TG)n Simple_repeat Simple_repeat 2 56 0 623 275 142 5 chr4 118753369 118753580 -65535082 - MIR SINE MIR 0 262 23 270 56 0 0 chr4 118754016 118754052 -65534610 + (TC)n Simple_repeat Simple_repeat 2 37 0 425 215 208 14 chr4 118756374 118756518 -65532144 - MIR SINE MIR -7 255 84 355 292 77 71 chr4 118756839 118757029 -65531633 + L1ME LINE L1 5264 5458 -663 2408 68 0 3 chr4 118757029 118757336 -65531326 - AluY SINE Alu -5 306 1 355 292 77 71 chr4 118757336 118757511 -65531151 + L1ME LINE L1 5458 5631 -490 851 208 6 0 chr4 118757626 118757794 -65530868 - L1PB4 LINE L1 -5 6151 5983 1033 223 0 0 chr4 118758366 118758572 -65530090 + MLT1B LTR MaLR 179 384 -6 234 0 0 0 chr4 118759637 118759663 -65528999 + (T)n Simple_repeat Simple_repeat 1 26 0 317 294 124 23 chr4 118759806 118760024 -65528638 - MIR SINE MIR 0 262 23 651 317 159 19 chr4 118760044 118760460 -65528202 + L2 LINE L2 2840 3313 0 289 295 27 27 chr4 118760547 118760659 -65528003 - MIR SINE MIR -149 113 2 473 289 198 0 chr4 118761945 118762142 -65526520 - MIR SINE MIR -25 237 2 420 285 102 0 chr4 118762383 118762520 -65526142 - MIR SINE MIR -110 152 2 379 303 48 7 chr4 118763572 118763717 -65524945 + MIR SINE MIR 32 182 -80 789 121 0 0 chr4 118764357 118764481 -65524181 + (GAA)n Simple_repeat Simple_repeat 1 124 0 2736 164 14 4 chr4 118764910 118765393 -65523269 - Tigger5 DNA MER2_type -5 2318 1831 978 208 91 0 chr4 118765393 118765590 -65523072 - Tigger5 DNA MER2_type -2108 215 1 282 95 0 0 chr4 118766420 118766462 -65522200 + (TG)n Simple_repeat Simple_repeat 2 43 0 409 295 72 12 chr4 118767388 118767554 -65521108 - MIR SINE MIR -13 249 74 23 0 0 0 chr4 118767705 118767728 -65520934 + AT_rich Low_complexity Low_complexity 1 23 0 222 348 36 18 chr4 118768573 118768685 -65519977 + L2 LINE L2 2452 2565 -749 222 301 29 58 chr4 118768669 118768772 -65519890 + L2 LINE L2 3129 3228 -85 807 128 14 54 chr4 118769711 118769859 -65518803 - THE1C LTR MaLR 0 375 234 847 45 0 9 chr4 118770190 118770301 -65518361 - AluY SINE Alu -30 281 172 22 56 0 0 chr4 118770942 118770978 -65517684 + AT_rich Low_complexity Low_complexity 1 36 0 717 313 49 70 chr4 118771949 118772107 -65516555 - MLT1J LTR MaLR -49 462 302 2234 108 0 0 chr4 118772107 118772403 -65516259 - AluSc SINE Alu -13 296 1 717 313 49 70 chr4 118772403 118772713 -65515949 - MLT1J LTR MaLR -209 302 4 260 331 114 12 chr4 118773596 118773762 -65514900 + MIR SINE MIR 5 187 -75 544 186 4 157 chr4 118775051 118775293 -65513369 + L1ME LINE L1 5363 5564 -600 876 174 267 68 chr4 118776906 118777217 -65511445 - MLT1E1 LTR MaLR -278 376 4 2051 122 7 0 chr4 118777488 118777774 -65510888 + AluSc SINE Alu 1 288 -21 488 238 269 0 chr4 118777829 118778022 -65510640 + MIR SINE MIR 18 262 0 28 0 0 0 chr4 118778116 118778144 -65510518 + AT_rich Low_complexity Low_complexity 1 28 0 2420 158 67 18 chr4 118778147 118778641 -65510021 + L1MA7 LINE L1 5771 6288 -3 24 53 0 0 chr4 118779003 118779041 -65509621 + AT_rich Low_complexity Low_complexity 1 38 0 1399 178 4 25 chr4 118779272 118779514 -65509148 + AluJb SINE Alu 1 237 -75 572 297 29 29 chr4 118779603 118779812 -65508850 - MIR SINE MIR 0 262 54 1938 150 42 33 chr4 118780124 118780485 -65508177 + THE1B LTR MaLR 1 364 0 11424 108 3 2 chr4 118780485 118782063 -65506599 + THE1B-int LTR MaLR 1 1580 0 2131 122 38 49 chr4 118782063 118782431 -65506231 + THE1B LTR MaLR 1 364 0 438 252 77 14 chr4 118784664 118784807 -65503855 - MLT1J2 LTR MaLR -45 405 254 348 260 95 15 chr4 118784833 118784972 -65503690 - MLT1J1 LTR MaLR -201 208 64 457 339 180 28 chr4 118785151 118785579 -65503083 + L2 LINE L2 2245 2737 -577 423 245 197 7 chr4 118785933 118786080 -65502582 + MER5B DNA MER1_type 4 178 0 25 0 0 0 chr4 118786837 118786862 -65501800 + AT_rich Low_complexity Low_complexity 1 25 0 235 227 47 78 chr4 118787140 118787268 -65501394 + MLT1K LTR MaLR 447 570 -18 2183 68 41 14 chr4 118788607 118788936 -65499726 - AluYa5 SINE Alu 0 337 1 273 328 140 20 chr4 118789039 118789289 -65499373 + L2 LINE L2 2949 3228 -85 236 235 0 0 chr4 118790373 118790424 -65498238 - L2 LINE L2 -1 3312 3262 2036 122 3 26 chr4 118791375 118791678 -65496984 - AluSx SINE Alu -12 300 5 2159 121 62 14 chr4 118791833 118792189 -65496473 - THE1C LTR MaLR -2 373 1 6095 115 22 6 chr4 118792189 118793086 -65495576 - THE1C-int LTR MaLR 0 1580 669 1994 137 0 0 chr4 118793156 118793475 -65495187 + AluSx SINE Alu 2 320 0 40 37 0 0 chr4 118793512 118793566 -65495096 + AT_rich Low_complexity Low_complexity 1 54 0 277 238 16 0 chr4 118793690 118793753 -65494909 - L1ME LINE L1 -445 5676 5613 212 59 29 0 chr4 118793756 118793790 -65494872 + (TTC)n Simple_repeat Simple_repeat 1 35 0 468 322 225 44 chr4 118793939 118795071 -65493591 - L2 LINE L2 -371 2943 1607 398 326 86 5 chr4 118795992 118796179 -65492483 - MIR SINE MIR -41 221 20 25 0 0 0 chr4 118796953 118796978 -65491684 + AT_rich Low_complexity Low_complexity 1 25 0 26 64 0 0 chr4 118797546 118797593 -65491069 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr4 118797640 118797662 -65491000 + AT_rich Low_complexity Low_complexity 1 22 0 248 273 10 0 chr4 118797835 118797934 -65490728 + (TA)n Simple_repeat Simple_repeat 1 100 0 224 154 19 0 chr4 118800544 118800596 -65488066 + (TG)n Simple_repeat Simple_repeat 2 54 0 2216 97 17 0 chr4 118800689 118800987 -65487675 + AluSp SINE Alu 1 303 -10 312 347 149 30 chr4 118801206 118801609 -65487053 - L2 LINE L2 -4 3309 2859 293 297 34 20 chr4 118801735 118801883 -65486779 - L2 LINE L2 -579 2735 2586 2280 94 0 0 chr4 118802064 118802352 -65486310 - AluSg SINE Alu -22 288 1 747 176 0 15 chr4 118802445 118802581 -65486081 - AluJo SINE Alu -178 134 1 18898 163 39 25 chr4 118802611 118804263 -65484399 + L1MA1 LINE L1 12 1640 -6081 315 0 0 0 chr4 118804263 118804298 -65484364 + (GA)n Simple_repeat Simple_repeat 2 36 0 18898 163 39 25 chr4 118804298 118808070 -65480592 + L1MA1 LINE L1 1640 5359 -2362 266 83 0 0 chr4 118808070 118808106 -65480556 - tRNA-Gly-GGA tRNA tRNA -38 37 2 18898 163 39 25 chr4 118808106 118809423 -65479239 + L1MA1 LINE L1 5359 6903 -818 1991 177 8 19 chr4 118809423 118809802 -65478860 + THE1C LTR MaLR 1 375 0 18898 163 39 25 chr4 118809802 118810397 -65478265 + L1MA1 LINE L1 6903 7488 -233 21 95 0 0 chr4 118811332 118811395 -65477267 + AT_rich Low_complexity Low_complexity 1 63 0 22 0 0 0 chr4 118811426 118811448 -65477214 + AT_rich Low_complexity Low_complexity 1 22 0 474 280 16 82 chr4 118811982 118812225 -65476437 - MLT1J LTR MaLR -49 462 236 251 319 32 0 chr4 118812258 118812352 -65476310 - MLT1L LTR MaLR -516 99 3 2124 121 26 37 chr4 118812838 118813217 -65475445 + THE1C LTR MaLR 1 375 0 9978 132 12 29 chr4 118813217 118814825 -65473837 + THE1C-int LTR MaLR 1 1580 0 986 205 11 11 chr4 118814825 118815010 -65473652 + THE1C LTR MaLR 1 185 -190 294 257 129 71 chr4 118815498 118815638 -65473024 + MIR SINE MIR 2 149 -113 1046 52 7 0 chr4 118816233 118816368 -65472294 - L1P LINE L1 -1788 4358 4223 6004 48 0 0 chr4 118816368 118817091 -65471571 + L1PA5 LINE L1 5417 6147 -7 360 336 60 34 chr4 118817160 118817395 -65471267 - MIR SINE MIR -8 254 14 825 152 37 47 chr4 118817830 118818021 -65470641 + MER53 DNA DNA 1 189 0 652 278 57 48 chr4 118819492 118819572 -65469090 - MIR SINE MIR -30 232 154 1275 288 28 28 chr4 118819572 118820031 -65468631 - LTR40b LTR ERVL -3 459 1 652 278 57 48 chr4 118820031 118820159 -65468503 - MIR SINE MIR -108 154 22 211 337 95 0 chr4 118822664 118822759 -65465903 - L2 LINE L2 0 3272 3169 304 265 19 99 chr4 118822968 118823130 -65465532 - MIR SINE MIR -61 201 53 322 259 35 0 chr4 118823861 118823946 -65464716 + MER5A DNA MER1_type 9 96 -93 550 169 136 8 chr4 118823946 118824064 -65464598 - THE1B LTR MaLR 0 364 232 278 313 78 17 chr4 118824210 118824325 -65464337 - MER5B DNA MER1_type 0 178 57 256 217 12 12 chr4 118824335 118824418 -65464244 + (TATATG)n Simple_repeat Simple_repeat 5 87 0 222 318 93 31 chr4 118825052 118825181 -65463481 - MIR SINE MIR -113 149 13 1656 148 59 0 chr4 118827867 118828172 -65460490 - L1MB2 LINE L1 -2 6169 5847 996 180 28 0 chr4 118828294 118828480 -65460182 - L1MB2 LINE L1 -333 5838 5641 401 314 17 57 chr4 118830416 118830591 -65458071 + MIR3 SINE MIR 7 174 -34 198 0 0 0 chr4 118830724 118830746 -65457916 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 2259 37 0 0 chr4 118830749 118831020 -65457642 - L1PA3 LINE L1 -10 6145 5875 184 259 0 37 chr4 118831129 118831183 -65457479 + MIR3 SINE MIR 10 61 -147 976 329 42 21 chr4 118831232 118831664 -65456998 - LTR33 LTR ERVL -62 459 19 392 135 14 0 chr4 118832694 118832768 -65455894 + (TA)n Simple_repeat Simple_repeat 1 75 0 2024 150 0 0 chr4 118832768 118833062 -65455600 - AluSx SINE Alu -18 294 1 846 237 32 0 chr4 118833062 118833248 -65455414 - MER20 DNA MER1_type -26 193 2 2961 149 61 59 chr4 118835200 118835843 -65452819 - MER73 LTR ERVL 0 644 1 781 233 68 35 chr4 118835942 118836287 -65452375 + MLT1A1 LTR MaLR 1 365 0 182 391 91 17 chr4 118837136 118837366 -65451296 - L2 LINE L2 -436 2878 2632 273 331 73 16 chr4 118837391 118837515 -65451147 + MIR SINE MIR 22 152 -110 772 223 42 6 chr4 118840000 118840166 -65448496 - MER5B DNA MER1_type 0 178 7 419 214 52 78 chr4 118840178 118840332 -65448330 + MIR SINE MIR 15 164 -98 1659 231 70 6 chr4 118840332 118840872 -65447790 - MER69 DNA AcHobo -1 2525 1951 309 206 0 118 chr4 118841267 118841369 -65447293 + L1MC4 LINE L1 6614 6703 -1339 * 324 286 0 22 chr4 118841337 118841428 -65447234 + L1MC4 LINE L1 6614 6702 -1340 4230 194 42 47 chr4 118841472 118842178 -65446484 - L1 LINE L1 -2818 4747 4062 2248 117 0 0 chr4 118842178 118842486 -65446176 - AluSg SINE Alu -2 308 1 4230 194 42 47 chr4 118842486 118843184 -65445478 - L1 LINE L1 -3503 4062 3362 1318 153 31 38 chr4 118843257 118843575 -65445087 + L1MA7 LINE L1 5999 6314 0 375 184 97 0 chr4 118843702 118843805 -65444857 - MER69 DNA AcHobo -872 354 242 24 32 0 0 chr4 118843920 118843951 -65444711 + AT_rich Low_complexity Low_complexity 1 31 0 28 29 0 0 chr4 118845633 118845668 -65442994 + AT_rich Low_complexity Low_complexity 1 35 0 190 328 155 35 chr4 118846208 118846324 -65442338 + L2 LINE L2 3142 3271 -1 212 204 102 0 chr4 118847116 118847165 -65441497 - MIR SINE MIR -115 93 40 180 439 7 14 chr4 118847136 118847275 -65441387 - L2 LINE L2 -162 3110 2973 * 366 281 138 9 chr4 118847761 118847978 -65440684 - L2 LINE L2 -921 2393 2149 372 59 0 0 chr4 118848436 118848487 -65440175 + (TG)n Simple_repeat Simple_repeat 2 52 0 365 336 49 25 chr4 118848632 118848876 -65439786 - L2 LINE L2 -102 3211 2962 348 304 48 0 chr4 118848875 118849000 -65439662 - L2 LINE L2 -513 2801 2671 * 242 241 11 0 chr4 118849070 118849157 -65439505 + GA-rich Low_complexity Low_complexity 3 90 0 293 267 12 35 chr4 118850331 118850417 -65438245 - L2 LINE L2 -1 3271 3188 285 113 19 19 chr4 118851736 118851789 -65436873 - MER94 DNA DNA -3 131 79 1183 222 89 10 chr4 118853444 118853858 -65434804 - MER114 LTR ERV 0 648 202 222 37 0 0 chr4 118853868 118853895 -65434767 + (TG)n Simple_repeat Simple_repeat 2 28 0 328 237 140 9 chr4 118853909 118854023 -65434639 - MER114 LTR ERV -510 138 10 595 257 119 18 chr4 118854736 118854962 -65433700 + MIR SINE MIR 7 255 -7 309 295 31 39 chr4 118856853 118856982 -65431680 + HAL1b LINE L1 333 460 -888 25 0 0 0 chr4 118856984 118857009 -65431653 + AT_rich Low_complexity Low_complexity 1 25 0 16728 114 30 47 chr4 118857031 118861033 -65427629 + L1PA7 LINE L1 10 4045 -2416 6910 65 1 3 chr4 118861033 118862031 -65426631 + L1PA7 LINE L1 5472 6468 -1 396 306 115 19 chr4 118862038 118862247 -65426415 + HAL1b LINE L1 495 723 -625 222 37 0 0 chr4 118862283 118862310 -65426352 + (GA)n Simple_repeat Simple_repeat 2 28 0 189 121 0 0 chr4 118862362 118862395 -65426267 + (TATAA)n Simple_repeat Simple_repeat 4 36 0 635 237 30 160 chr4 118863125 118863526 -65425136 + MLT1E LTR MaLR 24 372 -221 293 266 0 25 chr4 118863530 118863609 -65425053 + GA-rich Low_complexity Low_complexity 1 77 0 1856 222 124 58 chr4 118863695 118864360 -65424302 + L1MC4 LINE L1 7216 7941 -101 360 0 0 0 chr4 118864360 118864400 -65424262 + (TG)n Simple_repeat Simple_repeat 2 41 0 1856 222 124 58 chr4 118864400 118864509 -65424153 + L1MC4 LINE L1 7941 8041 -1 359 199 149 35 chr4 118864578 118864719 -65423943 - L1ME4a LINE L1 -13 6108 5952 1933 314 123 9 chr4 118864888 118865919 -65422743 + L2 LINE L2 1986 3121 -192 254 298 25 44 chr4 118866253 118866348 -65422314 + L1M4 LINE L1 4942 5034 -1112 1020 222 84 74 chr4 118866348 118866740 -65421922 + MSTD LTR MaLR 1 396 0 254 298 25 44 chr4 118866740 118866802 -65421860 + L1M4 LINE L1 5034 5096 -1050 21 0 0 0 chr4 118866996 118867017 -65421645 + AT_rich Low_complexity Low_complexity 1 21 0 218 241 17 0 chr4 118867414 118867472 -65421190 + (TA)n Simple_repeat Simple_repeat 2 60 0 333 0 0 0 chr4 118867474 118867511 -65421151 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr4 118867629 118867650 -65421012 + AT_rich Low_complexity Low_complexity 1 21 0 2220 94 0 23 chr4 118868426 118868734 -65419928 + AluSq SINE Alu 1 301 -12 1486 249 31 31 chr4 118870278 118870760 -65417902 - Charlie4a DNA MER1_type -7 501 20 3264 152 107 0 chr4 118871444 118872050 -65416612 + LTR51 LTR ERV1 1 671 0 281 250 71 0 chr4 118872518 118872602 -65416060 - MIR3 SINE MIR -1 207 118 374 347 30 6 chr4 118872793 118872960 -65415702 - MIR SINE MIR -74 188 18 207 186 0 0 chr4 118873128 118873171 -65415491 + (TA)n Simple_repeat Simple_repeat 2 44 0 17761 40 0 0 chr4 118873222 118876182 -65412480 + L1PA5 LINE L1 3187 6154 0 1892 70 0 0 chr4 118876393 118876637 -65412025 - L1PA13 LINE L1 -4 6159 5916 1736 180 0 14 chr4 118876670 118876965 -65411697 + AluJo SINE Alu 2 292 -20 23 33 0 0 chr4 118876990 118877020 -65411642 + AT_rich Low_complexity Low_complexity 1 30 0 438 346 0 10 chr4 118877747 118877949 -65410713 + MLT1L LTR MaLR 12 211 -404 22 0 0 0 chr4 118878158 118878180 -65410482 + AT_rich Low_complexity Low_complexity 1 22 0 191 350 29 0 chr4 118878568 118878696 -65409966 - MIR SINE MIR -24 184 49 180 323 138 0 chr4 118879054 118879119 -65409543 + MIR SINE MIR 66 139 -69 3316 157 26 20 chr4 118879145 118879794 -65408868 + L1MA9 LINE L1 5625 6277 -35 257 252 28 84 chr4 118879821 118879928 -65408734 + MIR SINE MIR 162 262 0 181 333 91 0 chr4 118880159 118880225 -65408437 + L2 LINE L2 3139 3210 -62 2810 13 0 0 chr4 118883191 118883501 -65405161 - AluYa5 SINE Alu -1 310 1 515 335 30 63 chr4 118883812 118884032 -65404630 - L2 LINE L2 -19 3294 3091 1795 126 0 42 chr4 118884032 118884317 -65404345 + AluJb SINE Alu 40 312 0 515 335 30 63 chr4 118884317 118884490 -65404172 - L2 LINE L2 -222 3091 2914 269 115 0 33 chr4 118885234 118885295 -65403367 + (GAAA)n Simple_repeat Simple_repeat 4 62 0 1055 169 53 5 chr4 118885316 118885505 -65403157 - MSTA LTR MaLR -230 198 1 677 172 9 1 chr4 118885505 118885633 -65403029 + MER5A DNA MER1_type 20 136 -42 2281 97 39 33 chr4 118886097 118886459 -65402203 - THE1B LTR MaLR 0 364 1 435 323 53 49 chr4 118886786 118887012 -65401650 + MIR SINE MIR 30 256 -6 1585 91 3 224 chr4 118887033 118887394 -65401268 - AluSq SINE Alu -32 281 1 25 0 0 0 chr4 118887394 118887419 -65401243 + AT_rich Low_complexity Low_complexity 1 25 0 326 280 65 0 chr4 118889502 118889609 -65399053 - L1MEc LINE L1 -2321 3894 3781 428 211 49 21 chr4 118889633 118889775 -65398887 - L1MEc LINE L1 -4273 2123 1978 * 642 241 64 34 chr4 118889771 118889985 -65398677 - L1MEc LINE L1 -2455 3760 3535 1049 202 64 69 chr4 118889985 118890331 -65398331 + MER2 DNA MER2_type 1 344 0 642 241 64 34 chr4 118890331 118890382 -65398280 - L1MEc LINE L1 -2680 3535 3487 240 143 0 0 chr4 118890407 118890442 -65398220 + LTR30 LTR ERV1 13 47 -675 2269 96 102 208 chr4 118890442 118891039 -65397623 + LTR12 LTR ERV1 48 581 -133 22 0 0 0 chr4 118891080 118891102 -65397560 + AT_rich Low_complexity Low_complexity 1 22 0 5263 19 3 5 chr4 118891164 118891782 -65396880 + L1PA3 LINE L1 5537 6153 -2 276 194 136 39 chr4 118891873 118892028 -65396634 - L1MEc LINE L1 -3105 3110 2941 260 229 49 0 chr4 118892036 118892097 -65396565 - MLT1E LTR MaLR -529 64 1 418 254 117 33 chr4 118892136 118892470 -65396192 - L1MEc LINE L1 -4098 2298 1937 500 311 117 38 chr4 118892644 118894324 -65394338 - L1MEc LINE L1 -2222 3993 2181 282 312 58 86 chr4 118894746 118894952 -65393710 - L1MEc LINE L1 -5734 471 278 2379 109 19 21 chr4 118894952 118895328 -65393334 + THE1C LTR MaLR 1 375 0 282 312 58 86 chr4 118895328 118895483 -65393179 - L1MEc LINE L1 -5927 278 120 1147 327 108 12 chr4 118895508 118896071 -65392591 + L2 LINE L2 962 1578 -1736 328 318 31 31 chr4 118896142 118896271 -65392391 + MER69 DNA AcHobo 400 528 -1998 1849 271 58 6 chr4 118896403 118896676 -65391986 - L1M4 LINE L1 -1242 4904 4647 315 0 0 0 chr4 118896676 118896711 -65391951 + (CA)n Simple_repeat Simple_repeat 2 36 0 1849 271 58 6 chr4 118896711 118897160 -65391502 - L1M4 LINE L1 -1499 4647 4144 728 96 15 22 chr4 118897168 118897303 -65391359 + (TTTC)n Simple_repeat Simple_repeat 3 136 0 586 286 32 32 chr4 118897318 118897538 -65391124 + MIR SINE MIR 43 262 0 1682 109 97 198 chr4 118898072 118898548 -65390114 - MSTA LTR MaLR 0 428 1 8138 177 15 33 chr4 118898548 118900155 -65388507 - MSTA-int LTR MaLR 0 1580 3 1064 146 101 20 chr4 118900157 118900356 -65388306 - MSTA LTR MaLR 0 428 214 1501 155 107 7 chr4 118900387 118900658 -65388004 - MSTA LTR MaLR -130 298 1 251 253 40 0 chr4 118900997 118901072 -65387590 - MER103 DNA DNA -7 159 82 22 0 0 73 chr4 118902117 118902158 -65386504 + AT_rich Low_complexity Low_complexity 1 38 0 279 79 0 0 chr4 118902560 118902598 -65386064 + (CA)n Simple_repeat Simple_repeat 2 39 0 347 208 158 10 chr4 118903809 118903910 -65384752 + L2 LINE L2 3187 3302 -11 215 208 75 0 chr4 118904241 118904294 -65384368 - MIR3 SINE MIR -26 182 126 591 180 25 16 chr4 118905114 118905236 -65383426 - MLT1J LTR MaLR -325 186 64 268 274 88 34 chr4 118905244 118905448 -65383214 - L1M4 LINE L1 -2209 3937 3723 30134 121 12 57 chr4 118905629 118912068 -65376594 + L1PA7 LINE L1 9 6143 -11 28 29 0 0 chr4 118912068 118912103 -65376559 + AT_rich Low_complexity Low_complexity 1 35 0 970 340 138 28 chr4 118912575 118913840 -65374822 + L2 LINE L2 1910 3309 -4 6446 174 27 51 chr4 118916472 118917676 -65370986 + L1MA2 LINE L1 3069 4300 -2004 804 246 64 76 chr4 118917676 118918111 -65370551 + LTR7 LTR ERV1 21 450 0 6446 174 27 51 chr4 118918111 118920102 -65368560 + L1MA2 LINE L1 4300 6304 0 25 0 0 0 chr4 118920102 118920127 -65368535 + AT_rich Low_complexity Low_complexity 1 25 0 268 325 75 6 chr4 118920461 118920621 -65368041 - L1ME LINE L1 -477 5644 5474 269 216 14 14 chr4 118921025 118921099 -65367563 - L1MEc LINE L1 -5663 733 660 264 302 151 6 chr4 118921406 118921565 -65367097 - L1MEc LINE L1 -6121 275 94 502 294 43 5 chr4 118921638 118921825 -65366837 - L1MEd LINE L1 -4980 1139 946 527 223 135 149 chr4 118922130 118922560 -65366102 - L2 LINE L2 -12 3301 2878 399 219 0 0 chr4 118922774 118922870 -65365792 + (CATA)n Simple_repeat Simple_repeat 3 98 0 1158 298 168 0 chr4 118922974 118923390 -65365272 - L2 LINE L2 -447 2867 2382 246 186 23 0 chr4 118923402 118923445 -65365217 - L1MEd LINE L1 -5488 631 588 2088 176 11 13 chr4 118923490 118923864 -65364798 + THE1C LTR MaLR 1 373 -2 877 252 54 33 chr4 118923881 118924182 -65364480 - MER93b LTR ERV1 -20 383 46 252 0 0 0 chr4 118924530 118924558 -65364104 + (A)n Simple_repeat Simple_repeat 1 28 0 22 70 0 0 chr4 118924971 118925014 -65363648 + AT_rich Low_complexity Low_complexity 1 43 0 704 265 175 0 chr4 118925309 118925520 -65363142 + MIR SINE MIR 7 254 -8 1489 218 53 61 chr4 118925524 118926033 -65362629 - MLT1D LTR MaLR 0 505 1 23371 54 3 2 chr4 118927222 118930995 -65357667 - L1PA5 LINE L1 -15 6139 2356 2375 174 80 29 chr4 118931254 118931744 -65356918 + MLT2B2 LTR ERVL 1 515 0 6035 179 23 9 chr4 118931744 118933201 -65355461 - L1MC1 LINE L1 -7 6326 4859 860 214 36 0 chr4 118933915 118934107 -65354555 - L1MB7 LINE L1 -146 6038 5840 718 138 43 0 chr4 118934153 118934269 -65354393 + MER1B DNA MER1_type 116 236 -61 1058 215 9 0 chr4 118934270 118934498 -65354164 - L1MB7 LINE L1 -356 5828 5599 2946 180 54 42 chr4 118934511 118935199 -65353463 - L1MC3 LINE L1 -274 7511 6816 2188 122 3 3 chr4 118935202 118935496 -65353166 + AluSp SINE Alu 3 296 -17 878 198 29 0 chr4 118935974 118936146 -65352516 + MER1B DNA MER1_type 163 339 0 4350 181 73 32 chr4 118936146 118937260 -65351402 - L1MC3 LINE L1 -746 5400 5192 5750 115 33 12 chr4 118937266 118938187 -65350475 - L1MA3 LINE L1 0 6305 5366 396 305 108 14 chr4 118938302 118938496 -65350166 + MIR SINE MIR 47 262 0 21 36 0 0 chr4 118938707 118938735 -65349927 + AT_rich Low_complexity Low_complexity 1 28 0 404 227 91 0 chr4 118939807 118939895 -65348767 - MIR3 SINE MIR -23 185 90 2285 144 91 45 chr4 118941312 118941975 -65346687 - MER51A LTR ERV1 -9 625 1 1975 129 0 46 chr4 118942655 118942957 -65345705 + AluSx SINE Alu 3 290 -22 207 0 0 0 chr4 118942957 118942980 -65345682 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 405 0 0 0 chr4 118942979 118943024 -65345638 + (CA)n Simple_repeat Simple_repeat 2 46 0 2205 102 7 0 chr4 118944506 118944800 -65343862 - AluSc SINE Alu -12 297 2 1189 129 1 7 chr4 118946755 118946952 -65341710 - pTR5 LTR ERV1 -2044 394 66 259 265 31 20 chr4 118946952 118947050 -65341612 - LTR30 LTR ERV1 -80 642 544 4095 162 40 45 chr4 118947050 118948017 -65340645 - pTR5 LTR ERV1 -413 2025 742 224 245 75 0 chr4 118948344 118948397 -65340265 - MIR SINE MIR -1 261 205 379 110 0 27 chr4 118948405 118948478 -65340184 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 2418 91 0 0 chr4 118948482 118948810 -65339852 - AluY SINE Alu 0 311 3 293 198 93 0 chr4 118949006 118949092 -65339570 - AluY SINE Alu -205 96 3 245 298 55 73 chr4 118949413 118949631 -65339031 + MER112 DNA MER1_type 5 218 -42 2386 71 0 0 chr4 118949801 118950107 -65338555 + AluY SINE Alu 1 306 0 204 83 62 0 chr4 118950107 118950155 -65338507 + (TA)n Simple_repeat Simple_repeat 2 52 0 266 342 78 52 chr4 118950281 118950550 -65338112 + L2 LINE L2 2699 2974 -340 1019 283 39 37 chr4 118951188 118951598 -65337064 + LTR16A1 LTR ERVL 45 455 -2 230 282 12 12 chr4 118952647 118952732 -65335930 + L1ME2 LINE L1 6045 6129 -35 29 28 0 0 chr4 118953130 118953166 -65335496 + AT_rich Low_complexity Low_complexity 1 36 0 686 268 6 86 chr4 118953519 118953870 -65334792 + L1MC5 LINE L1 6637 6959 -1002 424 198 25 0 chr4 118953942 118954023 -65334639 - Tigger7 DNA MER2_type -1 2586 2504 1772 143 86 0 chr4 118954024 118954325 -65334337 - Tigger7 DNA MER2_type -1906 581 255 546 237 0 8 chr4 118954336 118954454 -65334208 + L1MB7 LINE L1 5977 6093 -91 1290 232 4 0 chr4 118954477 118954723 -65333939 - Tigger7 DNA MER2_type -486 247 1 381 221 110 25 chr4 118954724 118954887 -65333775 + L1ME2 LINE L1 754 930 -5140 260 152 0 0 chr4 118954947 118954993 -65333669 + L1MC5 LINE L1 6989 7034 -927 630 259 24 10 chr4 118955010 118955215 -65333447 + L1MC5 LINE L1 7019 7226 -735 1535 238 0 0 chr4 118955362 118955664 -65332998 + AluJo SINE Alu 1 302 -10 2508 267 32 20 chr4 118956159 118957629 -65331033 + L1ME2 LINE L1 4344 5830 -268 195 100 0 0 chr4 118957987 118958017 -65330645 + (TG)n Simple_repeat Simple_repeat 1 30 0 3105 139 26 8 chr4 118958679 118959175 -65329487 + LTR10B LTR ERV1 1 505 0 2786 181 16 41 chr4 118959737 118960343 -65328319 - L1MB7 LINE L1 -53 6131 5541 21 0 0 0 chr4 118961795 118961816 -65326846 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 118964024 118964046 -65324616 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 118965194 118965222 -65323440 + AT_rich Low_complexity Low_complexity 1 28 0 252 276 41 20 chr4 118967192 118967290 -65321372 - LTR67 LTR ERVL -9 548 449 1362 138 8 47 chr4 118967590 118967844 -65320818 + MLT1C LTR MaLR 3 246 -221 933 238 9 52 chr4 118967845 118968169 -65320493 + L1PB4 LINE L1 2087 2396 -3750 1752 143 23 108 chr4 118968170 118968420 -65320242 - THE1B LTR MaLR 0 364 159 2029 135 0 20 chr4 118968420 118968717 -65319945 - AluSg SINE Alu -19 291 1 1752 143 23 108 chr4 118968717 118968864 -65319798 - THE1B LTR MaLR -205 159 1 11586 99 7 0 chr4 118968864 118970433 -65318229 - THE1B-int LTR MaLR 0 1580 1 1618 164 14 20 chr4 118970433 118970726 -65317936 - THE1B LTR MaLR 0 364 74 525 298 73 30 chr4 118971383 118971755 -65316907 - L1M4 LINE L1 -3546 2600 2213 1046 175 29 45 chr4 118972243 118972489 -65316173 - L1P3 LINE L1 -5640 821 580 672 165 0 0 chr4 118972621 118972736 -65315926 - MSTA-int LTR MaLR -1535 116 2 1064 146 101 20 chr4 118972737 118972936 -65315726 - MSTA LTR MaLR 0 428 214 1512 155 107 7 chr4 118972967 118973238 -65315424 - MSTA LTR MaLR -130 298 1 9139 193 48 56 chr4 118973729 118977443 -65311219 + L1PB4 LINE L1 2456 6132 -24 257 271 94 10 chr4 118979881 118979977 -65308685 + MIR SINE MIR 31 134 -74 843 304 145 29 chr4 118980784 118981679 -65306983 + L2 LINE L2 2304 3307 -6 2178 132 0 0 chr4 118982208 118982518 -65306144 - AluSx SINE Alu -2 310 1 183 352 97 21 chr4 118982623 118982768 -65305894 - L2 LINE L2 -4 3309 3154 307 319 26 17 chr4 118982904 118983020 -65305642 - MIR SINE MIR -135 127 11 299 395 93 32 chr4 118983183 118983591 -65305071 - L2 LINE L2 -375 2939 2507 1456 209 96 20 chr4 118983643 118983710 -65304952 + L1M1 LINE L1 18 79 -7486 330 67 0 0 chr4 118983710 118983755 -65304907 + (CA)n Simple_repeat Simple_repeat 2 46 0 1456 209 96 20 chr4 118983755 118984032 -65304630 + L1M1 LINE L1 79 388 -7177 896 172 6 6 chr4 118984014 118984171 -65304491 + THE1C-int LTR MaLR 1421 1577 -3 * 2554 105 16 11 chr4 118984174 118984547 -65304115 + THE1C LTR MaLR 1 375 0 6766 129 15 27 chr4 118984547 118985987 -65302675 + L1MA2 LINE L1 4372 5781 -523 2896 13 0 0 chr4 118985987 118986303 -65302359 + AluYb8 SINE Alu 1 316 -2 6766 129 15 27 chr4 118986303 118986822 -65301840 + L1MA2 LINE L1 5781 6304 0 2501 35 10 0 chr4 118987952 118987964 -65300698 - L1PA2 LINE L1 -4 6151 6141 180 97 0 0 chr4 118987964 118987995 -65300667 + (TTAA)n Simple_repeat Simple_repeat 2 32 0 2501 35 10 0 chr4 118987995 118988293 -65300369 - L1PA2 LINE L1 -14 6141 5838 430 256 39 8 chr4 118990846 118990975 -65297687 + MIR SINE MIR 2 134 -128 197 328 30 0 chr4 118991305 118991372 -65297290 - L2 LINE L2 -11 3261 3193 206 220 237 0 chr4 118991405 118991464 -65297198 + L2 LINE L2 3241 3313 0 754 325 71 20 chr4 118991586 118991995 -65296667 + L2 LINE L2 1750 2179 -1135 408 313 39 0 chr4 118992308 118992436 -65296226 + L2 LINE L2 3138 3270 -2 184 229 33 82 chr4 118992552 118992613 -65296049 - L2 LINE L2 -339 2975 2918 950 189 11 26 chr4 118993254 118993399 -65295263 - MLT1B LTR MaLR -1 466 323 2249 112 123 5 chr4 118993399 118993782 -65294880 - MSTA LTR MaLR 0 428 1 950 189 11 26 chr4 118993782 118993826 -65294836 - MLT1B LTR MaLR -144 323 280 * 1284 174 11 38 chr4 118993797 118994062 -65294600 - MLT1B LTR MaLR -132 258 1 224 321 53 46 chr4 118994063 118994194 -65294468 - L2 LINE L2 -629 2685 2554 1209 188 0 35 chr4 118994196 118994425 -65294237 + AluJo SINE Alu 86 306 -6 240 340 9 0 chr4 118994615 118994721 -65293941 - L1M4 LINE L1 -3082 3064 2958 1640 302 99 34 chr4 118994721 118995718 -65292944 - L2 LINE L2 -10 3303 2255 242 290 32 0 chr4 118995791 118995884 -65292778 - L1M4 LINE L1 -3382 2764 2669 8456 169 10 91 chr4 118996332 118996774 -65291888 + L1PA15 LINE L1 3230 3706 -2459 225 0 0 0 chr4 118996774 118996799 -65291863 + (CAA)n Simple_repeat Simple_repeat 3 27 0 8456 169 10 91 chr4 118996799 118997491 -65291171 + L1PA15 LINE L1 3706 4452 -1713 7193 43 7 0 chr4 118997491 118998852 -65289810 + L1PA5 LINE L1 4782 6149 -5 8456 169 10 91 chr4 118998852 119000683 -65287979 + L1PA15 LINE L1 4452 5941 -224 3580 266 39 36 chr4 119000785 119001942 -65286720 + L1PA13 LINE L1 730 1889 -4898 1053 144 6 0 chr4 119002043 119002210 -65286452 + L1PA15 LINE L1 5997 6164 -1 249 256 181 9 chr4 119003341 119003508 -65285154 + MIR3 SINE MIR 15 212 -50 317 111 0 0 chr4 119003912 119003957 -65284705 - MLT1D LTR MaLR -1 625 581 1387 240 55 61 chr4 119004064 119004523 -65284139 - MLT1D LTR MaLR -49 456 1 281 75 0 0 chr4 119005018 119005058 -65283604 + AluSc SINE Alu 252 291 -8 838 247 28 36 chr4 119005092 119005343 -65283319 + MER58 DNA MER1_type 1 249 -92 237 269 0 19 chr4 119005393 119005445 -65283217 - MER105 DNA DNA -151 53 3 2261 171 98 19 chr4 119005481 119006247 -65282415 + L1M2 LINE L1 4849 5658 -642 364 167 93 9 chr4 119006349 119006457 -65282205 + L1MC4 LINE L1 7522 7638 -404 2309 226 65 43 chr4 119006978 119007795 -65280867 - L1M4 LINE L1 -1568 4578 3744 834 292 98 35 chr4 119007812 119008265 -65280397 - L1MEc LINE L1 -5880 516 30 2158 176 14 32 chr4 119008265 119008708 -65279954 - L1MA8 LINE L1 -6 6285 5851 834 292 98 35 chr4 119008708 119008733 -65279929 - L1MEc LINE L1 -6366 30 8 37 39 0 0 chr4 119009786 119009837 -65278825 + AT_rich Low_complexity Low_complexity 1 51 0 789 291 22 73 chr4 119010106 119010184 -65278478 + Zaphod DNA AcHobo 12 92 -3939 968 87 7 0 chr4 119010184 119010322 -65278340 + L1PA7 LINE L1 6016 6154 0 789 291 22 73 chr4 119010322 119010559 -65278103 + Zaphod DNA AcHobo 92 311 -3720 1382 186 4 16 chr4 119010671 119010918 -65277744 - AluJo SINE Alu -54 258 15 470 290 47 35 chr4 119012224 119012393 -65276269 - MIR3 SINE MIR -7 201 31 498 325 19 49 chr4 119015913 119016221 -65272441 + L2 LINE L2 1619 1917 -1397 249 232 84 21 chr4 119016886 119016981 -65271681 - MIR SINE MIR -61 201 101 230 123 53 53 chr4 119017000 119017057 -65271605 + A-rich Low_complexity Low_complexity 3 59 0 961 208 11 0 chr4 119017069 119017252 -65271410 + AluJo SINE Alu 117 301 -11 400 356 0 19 chr4 119017490 119017650 -65271012 + L2 LINE L2 2152 2308 -1006 191 210 62 62 chr4 119018012 119018093 -65270569 + L2 LINE L2 2263 2343 -971 183 299 62 21 chr4 119018105 119018202 -65270460 + L3 LINE CR1 1249 1349 -228 531 305 77 13 chr4 119018563 119018796 -65269866 - LTR50 LTR ERVL -163 632 385 1764 59 63 5 chr4 119021431 119021653 -65267009 + AluY SINE Alu 1 235 -76 260 252 70 63 chr4 119022268 119022411 -65266251 - MIR SINE MIR -3 259 116 2261 112 0 0 chr4 119022517 119022820 -65265842 + AluSx SINE Alu 1 303 -9 29 28 0 0 chr4 119023731 119023767 -65264895 + AT_rich Low_complexity Low_complexity 1 36 0 2125 117 0 0 chr4 119023856 119024160 -65264502 - AluSg SINE Alu 0 304 1 216 231 135 0 chr4 119024330 119024382 -65264280 - L2 LINE L2 -62 3251 3193 2378 97 3 0 chr4 119025173 119025484 -65263178 - AluSp SINE Alu -1 312 1 3991 198 19 8 chr4 119025645 119026467 -65262195 + L1MA9 LINE L1 4433 5263 -883 2586 218 40 35 chr4 119026497 119027148 -65261514 + L1MA9 LINE L1 5591 6244 -68 * 5030 206 26 36 chr4 119027136 119027629 -65261033 + L1MA9 LINE L1 3784 4281 -2031 419 62 47 0 chr4 119027629 119027693 -65260969 + Alu SINE Alu 225 291 -18 5030 206 26 36 chr4 119027693 119029757 -65258905 + L1MA9 LINE L1 4281 6287 -25 286 183 42 0 chr4 119029761 119029832 -65258830 + L1MA9 LINE L1 6239 6312 0 1616 201 102 39 chr4 119029911 119030399 -65258263 - LTR40a LTR ERVL 0 519 1 414 319 110 0 chr4 119030413 119030604 -65258058 - MIR SINE MIR -3 259 48 380 273 83 75 chr4 119031137 119031390 -65257272 + L2 LINE L2 3057 3311 -2 21 0 0 0 chr4 119031554 119031575 -65257087 + AT_rich Low_complexity Low_complexity 1 21 0 477 229 151 0 chr4 119032493 119032650 -65256012 + MER5A DNA MER1_type 4 187 -2 205 346 146 39 chr4 119032832 119033222 -65255440 + L2 LINE L2 2235 2666 -648 202 371 72 46 chr4 119033336 119033530 -65255132 + L2 LINE L2 2827 3025 -247 1169 275 23 38 chr4 119033602 119033948 -65254714 + MLT1H LTR MaLR 44 384 -165 22 0 0 0 chr4 119034046 119034068 -65254594 + AT_rich Low_complexity Low_complexity 1 22 0 699 147 127 91 chr4 119034086 119034283 -65254379 + MER58C DNA MER1_type 12 215 0 670 283 122 19 chr4 119034296 119035102 -65253560 + L1ME3 LINE L1 4755 5651 -511 736 201 95 12 chr4 119035107 119035276 -65253386 + MER5A DNA MER1_type 1 183 -6 853 253 77 0 chr4 119035280 119035553 -65253109 + L1ME3 LINE L1 5654 5947 -223 304 339 43 47 chr4 119035586 119035819 -65252843 + L1ME3 LINE L1 5931 6162 0 682 186 43 14 chr4 119036900 119037040 -65251622 + MLT1A2 LTR MaLR 231 374 0 32 0 0 0 chr4 119037858 119037890 -65250772 + AT_rich Low_complexity Low_complexity 1 32 0 2410 97 0 0 chr4 119038637 119038947 -65249715 - AluSg SINE Alu 0 310 1 726 215 111 81 chr4 119038994 119039301 -65249361 - MLT1G LTR MaLR -24 566 251 1043 303 72 113 chr4 119039664 119039806 -65248856 + L2 LINE L2 704 850 -2464 1945 147 3 10 chr4 119039806 119040106 -65248556 + AluSx SINE Alu 1 298 -14 1043 303 72 113 chr4 119040106 119041817 -65246845 + L2 LINE L2 850 2480 -834 1044 271 47 47 chr4 119041828 119042256 -65246406 - LTR16A1 LTR ERVL -21 436 9 246 81 0 0 chr4 119042357 119042394 -65246268 + (CTG)n Simple_repeat Simple_repeat 3 39 0 807 330 67 44 chr4 119042407 119043441 -65245221 - ERVL LTR ERVL -415 5349 4234 13202 45 0 0 chr4 119043441 119045871 -65242791 - L1PA2 LINE L1 0 6155 3754 22896 40 46 3 chr4 119045871 119048760 -65239902 - L1PA2 LINE L1 -3132 3014 2 759 312 73 51 chr4 119048761 119049389 -65239273 - ERVL LTR ERVL -1241 4244 3603 21 0 0 0 chr4 119049731 119049752 -65238910 + AT_rich Low_complexity Low_complexity 1 21 0 16018 28 1 15 chr4 119050822 119052814 -65235848 + L1P LINE L1 2557 4519 -1627 234 293 77 19 chr4 119053315 119053506 -65235156 - MIR SINE MIR -11 251 6 474 262 47 20 chr4 119053646 119053795 -65234867 + Charlie8 DNA MER1_type 11 163 -2254 22 35 0 0 chr4 119054071 119054100 -65234562 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr4 119055080 119055110 -65233552 + AT_rich Low_complexity Low_complexity 1 30 0 189 107 0 0 chr4 119055834 119055862 -65232800 + (A)n Simple_repeat Simple_repeat 1 28 0 609 214 0 0 chr4 119056288 119056405 -65232257 + MLT1A1 LTR MaLR 1 117 -248 1525 215 95 11 chr4 119056411 119056760 -65231902 - MLT1F LTR MaLR -7 535 158 270 301 27 34 chr4 119056788 119056934 -65231728 - L1M3d LINE L1 -5745 146 2 2148 92 0 0 chr4 119057095 119057366 -65231296 + AluSx SINE Alu 1 271 -41 262 313 20 16 chr4 119057942 119058111 -65230551 + GA-rich Low_complexity Low_complexity 2 254 0 318 247 62 31 chr4 119059866 119059963 -65228699 - MIR SINE MIR -77 185 86 2140 218 35 8 chr4 119060800 119061281 -65227381 + LTR40a LTR ERVL 26 519 0 186 346 59 20 chr4 119061779 119061880 -65226782 - L3 LINE CR1 -5 1572 1468 471 315 30 30 chr4 119061945 119062129 -65226533 + MIR SINE MIR 34 220 -42 2707 20 0 0 chr4 119062129 119062428 -65226234 + AluYa5 SINE Alu 1 299 -12 471 315 30 30 chr4 119062428 119062443 -65226219 + MIR SINE MIR 219 233 -29 252 279 66 7 chr4 119062975 119063111 -65225551 - Charlie7 DNA MER1_type -47 2565 2422 995 274 122 17 chr4 119063131 119063360 -65225302 - Charlie7 DNA MER1_type -1975 637 434 4086 98 41 2 chr4 119063360 119063973 -65224689 - L1PA12 LINE L1 -1 6167 5531 995 274 122 17 chr4 119063973 119064275 -65224387 - Charlie7 DNA MER1_type -2178 434 50 22 0 0 0 chr4 119065579 119065601 -65223061 + AT_rich Low_complexity Low_complexity 1 22 0 293 156 0 0 chr4 119066208 119066253 -65222409 + LTR40a LTR ERVL 117 161 -358 232 211 0 35 chr4 119066502 119066559 -65222103 - L2 LINE L2 0 3313 3259 977 223 32 43 chr4 119066559 119066837 -65221825 + MER20B DNA MER1_type 239 513 -270 2041 241 121 25 chr4 119066837 119067817 -65220845 - L1 LINE L1 -1211 4935 3821 328 232 116 56 chr4 119070530 119070897 -65217765 - MLT1H LTR MaLR 0 549 69 1702 178 117 14 chr4 119070897 119071257 -65217405 + MLT2C1 LTR ERVL 1 397 0 328 232 116 56 chr4 119071257 119071331 -65217331 - MLT1H LTR MaLR -480 69 1 1209 254 116 5 chr4 119071362 119071768 -65216894 - LTR16B LTR ERVL -13 451 1 2277 108 7 0 chr4 119071981 119072288 -65216374 - AluSc SINE Alu 0 309 1 1249 241 137 28 chr4 119073147 119073836 -65214826 + L1MDb LINE L1 774 1490 -4916 6992 198 36 17 chr4 119073863 119076471 -65212191 + L1PB1 LINE L1 3 1716 -5147 14068 219 19 16 chr4 119076472 119080723 -65207939 + L1PB1 LINE L1 1804 6055 -807 1691 153 32 0 chr4 119080824 119081132 -65207530 + L1PB1 LINE L1 6549 6866 -1 3141 102 11 8 chr4 119081133 119081602 -65207060 + L1PB2 LINE L1 5674 6143 -8 2487 229 63 11 chr4 119081633 119082425 -65206237 + L1MDb LINE L1 1525 2357 -4049 * 2736 251 87 18 chr4 119082412 119083497 -65205165 + L1MDb LINE L1 2570 3728 -2678 269 298 0 11 chr4 119084485 119084579 -65204083 - MLT1G1-int LTR MaLR -1642 93 1 304 222 33 33 chr4 119084584 119084674 -65203988 - MLT1G1 LTR MaLR -8 587 498 198 283 61 40 chr4 119086321 119086420 -65202242 - MIR SINE MIR -12 250 150 248 229 0 43 chr4 119086500 119086541 -65202121 + CT-rich Low_complexity Low_complexity 4 42 -28 2233 142 28 42 chr4 119086541 119086972 -65201690 + MSTA LTR MaLR 3 427 -1 248 229 0 43 chr4 119086972 119087000 -65201662 + CT-rich Low_complexity Low_complexity 42 70 0 22 0 0 0 chr4 119087519 119087541 -65201121 + AT_rich Low_complexity Low_complexity 1 22 0 3966 180 39 24 chr4 119087852 119088325 -65200337 - L1MB2 LINE L1 -36 6135 5670 1479 197 119 19 chr4 119088325 119088685 -65199977 + MSTD LTR MaLR 1 396 0 3966 180 39 24 chr4 119088685 119089649 -65199013 - L1MB2 LINE L1 -501 5670 4677 1977 129 13 38 chr4 119090292 119090609 -65198053 - AluSx SINE Alu -3 309 1 35 24 0 0 chr4 119092617 119092659 -65196003 + AT_rich Low_complexity Low_complexity 1 42 0 183 42 0 0 chr4 119093050 119093074 -65195588 + (CA)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr4 119094144 119094165 -65194497 + AT_rich Low_complexity Low_complexity 1 21 0 243 114 0 0 chr4 119095547 119095591 -65193071 + (CA)n Simple_repeat Simple_repeat 1 44 0 649 279 47 43 chr4 119097075 119097351 -65191311 + L2 LINE L2 3028 3304 -9 329 286 225 28 chr4 119097353 119097531 -65191131 + MIR SINE MIR 43 255 -7 21 36 0 0 chr4 119097897 119097925 -65190737 + AT_rich Low_complexity Low_complexity 1 28 0 238 136 45 0 chr4 119098350 119098394 -65190268 - Alu SINE Alu -8 294 249 1215 182 46 73 chr4 119098515 119098817 -65189845 - AluJb SINE Alu -18 294 1 195 69 0 0 chr4 119098948 119098977 -65189685 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 949 324 101 48 chr4 119099150 119099884 -65188778 + L2 LINE L2 1821 2593 -721 253 177 191 21 chr4 119099904 119100045 -65188617 - Charlie7 DNA MER1_type -30 2582 2418 1072 260 105 39 chr4 119100061 119100154 -65188508 - Charlie7 DNA MER1_type -1914 698 613 417 20 0 0 chr4 119100154 119100204 -65188458 + (TA)n Simple_repeat Simple_repeat 2 51 0 1072 260 105 39 chr4 119100204 119100671 -65187991 - Charlie7 DNA MER1_type -1999 613 101 5324 150 26 56 chr4 119100682 119100943 -65187719 + L1PA16 LINE L1 4407 4674 -1492 243 0 0 0 chr4 119100943 119100970 -65187692 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 5324 150 26 56 chr4 119100970 119101841 -65186821 + L1PA16 LINE L1 4674 5463 -703 2181 128 0 0 chr4 119101841 119102153 -65186509 + AluSx SINE Alu 1 312 0 5324 150 26 56 chr4 119102153 119102834 -65185828 + L1PA16 LINE L1 5463 6163 -3 252 349 103 16 chr4 119103130 119103256 -65185406 + L2 LINE L2 2614 2750 -564 213 302 60 35 chr4 119103306 119103422 -65185240 + L2 LINE L2 2922 3040 -232 186 274 299 25 chr4 119103921 119104173 -65184489 + L2 LINE L2 2816 2998 -315 1911 160 3 16 chr4 119104173 119104485 -65184177 - AluJo SINE Alu -2 310 3 186 274 299 25 chr4 119104485 119104590 -65184072 + L2 LINE L2 2998 3271 -42 663 300 27 27 chr4 119104605 119104825 -65183837 - MIR SINE MIR -21 241 22 230 393 95 3 chr4 119105560 119105909 -65182753 - L2 LINE L2 -9 3263 2883 1204 269 138 43 chr4 119106198 119106960 -65181702 - L2 LINE L2 -1 3312 2457 555 144 0 0 chr4 119107083 119107173 -65181489 - AluSg/x SINE Alu -6 306 217 268 319 95 0 chr4 119107193 119107309 -65181353 + MIR SINE MIR 80 206 -56 304 315 133 29 chr4 119107375 119107616 -65181046 - L2 LINE L2 -832 2482 2217 300 91 45 0 chr4 119107709 119107775 -65180887 + (TA)n Simple_repeat Simple_repeat 2 70 0 2177 227 41 36 chr4 119107802 119108489 -65180173 + L1MB5 LINE L1 3367 4056 -2090 4279 191 62 4 chr4 119108493 119109657 -65179005 + L1MB5 LINE L1 4938 6174 0 186 337 34 22 chr4 119109911 119110000 -65178662 - L2 LINE L2 -1006 2308 2219 396 40 0 0 chr4 119111204 119111254 -65177408 + (CA)n Simple_repeat Simple_repeat 2 51 0 780 276 28 32 chr4 119111481 119111529 -65177133 + MER119 DNA MER1_type 16 63 -520 2607 107 5 5 chr4 119111529 119111904 -65176758 + THE1C LTR MaLR 1 375 0 780 276 28 32 chr4 119111904 119112072 -65176590 + MER119 DNA MER1_type 63 231 -352 442 248 60 8 chr4 119112061 119112178 -65176484 + MER119 DNA MER1_type 461 583 0 * 1958 138 0 33 chr4 119112299 119112604 -65176058 - AluSx SINE Alu -14 298 4 22 0 0 0 chr4 119112848 119112870 -65175792 + AT_rich Low_complexity Low_complexity 1 22 0 2346 94 0 0 chr4 119113001 119113300 -65175362 + AluSq SINE Alu 1 299 -14 404 240 56 45 chr4 119113768 119113980 -65174682 - L1ME3A LINE L1 -331 5839 5627 453 279 66 35 chr4 119114079 119114366 -65174296 - L1MEd LINE L1 -3644 2485 2190 1496 194 63 20 chr4 119114745 119115095 -65173567 - MLT1A1 LTR MaLR 0 365 1 1696 277 96 50 chr4 119115272 119116358 -65172304 - L1MEd LINE L1 -4980 1139 4 598 114 265 90 chr4 119120083 119120249 -65168413 - MER20 DNA MER1_type 0 219 25 628 218 337 4 chr4 119120267 119120510 -65168152 - MER5C DNA MER1_type 0 324 1 22 35 0 0 chr4 119120641 119120670 -65167992 + AT_rich Low_complexity Low_complexity 1 29 0 324 232 116 0 chr4 119120686 119120798 -65167864 + L1MC5 LINE L1 7790 7914 -47 687 227 41 6 chr4 119122265 119122437 -65166225 - MER5B DNA MER1_type 0 178 1 182 287 61 52 chr4 119122575 119122690 -65165972 - MIR SINE MIR -24 238 123 2853 127 136 22 chr4 119122718 119123269 -65165393 + LTR18B LTR ERVL 1 614 0 672 219 55 0 chr4 119123527 119123673 -65164989 - MER5B DNA MER1_type -19 159 6 304 297 39 0 chr4 119123676 119123804 -65164858 + MLT1L LTR MaLR 146 278 -337 455 266 73 17 chr4 119123878 119124055 -65164607 + MLT1L LTR MaLR 420 606 -9 198 0 0 0 chr4 119124923 119124945 -65163717 + (T)n Simple_repeat Simple_repeat 1 22 0 387 258 10 0 chr4 119126584 119126681 -65161981 - MER81 DNA DNA -1 113 16 21 0 0 0 chr4 119127941 119127962 -65160700 + AT_rich Low_complexity Low_complexity 1 21 0 210 143 0 0 chr4 119128282 119128317 -65160345 + (TATG)n Simple_repeat Simple_repeat 1 35 0 2196 109 7 7 chr4 119128644 119128946 -65159716 + AluSx SINE Alu 1 302 -10 195 184 0 0 chr4 119129413 119129451 -65159211 + (TATG)n Simple_repeat Simple_repeat 2 39 0 353 200 89 0 chr4 119131148 119131238 -65157424 + MIR SINE MIR 76 173 -89 22 35 0 0 chr4 119132359 119132388 -65156274 + AT_rich Low_complexity Low_complexity 1 29 0 476 236 147 66 chr4 119132628 119132886 -65155776 + MLT1J LTR MaLR 176 454 -57 27 73 0 0 chr4 119133611 119133666 -65154996 + AT_rich Low_complexity Low_complexity 1 55 0 337 276 106 8 chr4 119133783 119133906 -65154756 + MIR3 SINE MIR 68 202 -6 210 206 0 0 chr4 119134844 119134907 -65153755 + A-rich Low_complexity Low_complexity 1 63 0 450 36 0 0 chr4 119135383 119135439 -65153223 + (CA)n Simple_repeat Simple_repeat 2 57 0 285 327 0 0 chr4 119135448 119135561 -65153101 + MER103 DNA DNA 5 117 -49 207 223 0 64 chr4 119135595 119135689 -65152973 + L2 LINE L2 1997 2084 -1230 2561 167 52 6 chr4 119136842 119137191 -65151471 - L1PB4 LINE L1 -2 6154 5772 369 0 0 0 chr4 119137191 119137232 -65151430 + (TG)n Simple_repeat Simple_repeat 2 42 0 2561 167 52 6 chr4 119137232 119137396 -65151266 - L1PB4 LINE L1 -384 5772 5617 340 247 41 10 chr4 119137662 119137759 -65150903 + L2 LINE L2 3214 3313 0 442 216 118 10 chr4 119138722 119138824 -65149838 + L2 LINE L2 3201 3313 0 237 348 156 0 chr4 119138908 119139043 -65149619 - L2 LINE L2 -1 3271 3116 252 130 22 0 chr4 119139807 119139853 -65148809 - MLT1F1 LTR MaLR 0 590 544 29 70 0 0 chr4 119139872 119139929 -65148733 + AT_rich Low_complexity Low_complexity 1 57 0 668 275 199 3 chr4 119139962 119140308 -65148354 - MLT1F1 LTR MaLR -120 447 34 255 351 48 55 chr4 119141525 119141818 -65146844 + L2 LINE L2 2451 2741 -573 40641 36 21 1 chr4 119142405 119148464 -65140198 + L1PA3 LINE L1 1 6180 0 21 36 0 0 chr4 119148693 119148721 -65139941 + AT_rich Low_complexity Low_complexity 1 28 0 1592 214 10 0 chr4 119149352 119149647 -65139015 + AluJo SINE Alu 1 298 -14 893 254 120 27 chr4 119150052 119150453 -65138209 + L1MCc LINE L1 32 469 -5954 889 191 5 31 chr4 119150967 119151161 -65137501 + MER3 DNA MER1_type 3 191 -18 1523 260 70 42 chr4 119151218 119151677 -65136985 + L1MCc LINE L1 821 1308 -5115 327 49 0 0 chr4 119151677 119151718 -65136944 + (CA)n Simple_repeat Simple_repeat 2 42 0 1523 260 70 42 chr4 119151718 119151954 -65136708 + L1MCc LINE L1 1308 1536 -4887 818 210 0 0 chr4 119152054 119152197 -65136465 - FRAM SINE Alu -33 143 1 334 231 136 62 chr4 119152215 119152621 -65136041 + L1MCc LINE L1 1739 2174 -4948 667 233 189 0 chr4 119153699 119153879 -65134783 + MIR SINE MIR 26 239 -23 22 70 0 0 chr4 119155453 119155496 -65133166 + AT_rich Low_complexity Low_complexity 1 43 0 225 387 46 4 chr4 119156468 119156706 -65131956 + L2 LINE L2 1728 1975 -1339 218 411 40 33 chr4 119157189 119157491 -65131171 + L2 LINE L2 2253 2556 -758 214 240 20 0 chr4 119157517 119157567 -65131095 + (CAG)n Simple_repeat Simple_repeat 2 52 0 278 274 0 14 chr4 119158384 119158457 -65130205 - MER94 DNA DNA -4 130 59 1398 103 19 14 chr4 119158457 119158671 -65129991 + MLT2B2 LTR ERVL 6 220 -295 299 227 0 11 chr4 119158684 119158772 -65129890 + CT-rich Low_complexity Low_complexity 3 89 0 238 151 0 113 chr4 119158772 119158825 -65129837 + MLT2B3 LTR ERVL 185 231 -284 314 169 15 0 chr4 119158827 119158892 -65129770 + CT-rich Low_complexity Low_complexity 3 68 0 1084 222 38 73 chr4 119158919 119159262 -65129400 + MLT2B3 LTR ERVL 224 554 0 288 203 17 0 chr4 119159262 119159320 -65129342 - MER94 DNA DNA -71 63 5 1676 210 133 14 chr4 119159321 119159735 -65128927 + MLT1C LTR MaLR 1 463 -4 2447 75 0 0 chr4 119159749 119160044 -65128618 - AluY SINE Alu -16 295 1 633 274 41 40 chr4 119160881 119161106 -65127556 - MIR SINE MIR 0 262 36 416 296 51 66 chr4 119161719 119161993 -65126669 - L2 LINE L2 0 3313 3044 24 0 0 0 chr4 119165988 119166012 -65122650 + AT_rich Low_complexity Low_complexity 1 24 0 531 291 51 42 chr4 119166841 119166938 -65121724 - MIR SINE MIR -3 259 164 2413 100 3 0 chr4 119166938 119167248 -65121414 - AluSx SINE Alu -1 311 1 531 291 51 42 chr4 119167248 119167387 -65121275 - MIR SINE MIR -98 164 21 367 290 129 0 chr4 119167680 119167804 -65120858 + MIR3 SINE MIR 48 187 -21 2599 101 20 0 chr4 119168712 119169069 -65119593 + THE1B LTR MaLR 1 364 0 215 313 227 8 chr4 119169246 119169374 -65119288 + MIR3 SINE MIR 23 178 -30 214 303 0 45 chr4 119170516 119170582 -65118080 - L2 LINE L2 -537 2777 2715 2186 100 14 0 chr4 119170998 119171318 -65117344 - AluSx SINE Alu 0 324 1 286 248 16 40 chr4 119171322 119171447 -65117215 - L1MC4 LINE L1 -2 8040 7919 822 133 0 36 chr4 119171466 119171631 -65117031 - MER39B LTR ERV1 -72 581 423 239 98 49 0 chr4 119171631 119171672 -65116990 + Alu SINE Alu 248 290 -9 288 245 48 12 chr4 119172021 119172160 -65116502 - L1ME LINE L1 -268 5853 5709 408 310 212 10 chr4 119172896 119173099 -65115563 - MIR SINE MIR -17 245 2 4754 206 68 55 chr4 119173729 119175145 -65113517 + Charlie1a DNA MER1_type 6 1439 -16 183 129 0 0 chr4 119175843 119175874 -65112788 + (TC)n Simple_repeat Simple_repeat 1 31 0 348 276 0 0 chr4 119175874 119175961 -65112701 + L1MC4 LINE L1 6609 6695 -1347 243 154 108 0 chr4 119175966 119176031 -65112631 - L1MC4 LINE L1 -1340 6702 6631 1402 247 75 17 chr4 119177271 119177737 -65110925 + L1ME3A LINE L1 5673 6165 -5 2819 7 0 0 chr4 119177779 119178084 -65110578 + AluYa5 SINE Alu 1 305 -6 1003 280 108 31 chr4 119178226 119178627 -65110035 - L2 LINE L2 -405 2909 2459 2316 105 0 0 chr4 119178627 119178932 -65109730 + AluSg SINE Alu 1 305 -5 1003 280 108 31 chr4 119178932 119179041 -65109621 - L2 LINE L2 -855 2459 2360 1696 156 3 14 chr4 119180058 119180347 -65108315 - AluSx SINE Alu -10 302 17 255 268 42 14 chr4 119180665 119180736 -65107926 - L2 LINE L2 -38 3234 3162 22 56 0 0 chr4 119183303 119183339 -65105323 + AT_rich Low_complexity Low_complexity 1 36 0 324 119 0 191 chr4 119183846 119183907 -65104755 + L1MA3 LINE L1 6202 6273 -32 1754 154 0 28 chr4 119183907 119184193 -65104469 + AluSx SINE Alu 1 278 -34 243 0 0 0 chr4 119184196 119184223 -65104439 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 324 119 0 191 chr4 119184223 119184283 -65104379 + L1MA3 LINE L1 6275 6303 -2 1633 172 42 3 chr4 119184462 119184747 -65103915 + AluJo SINE Alu 3 298 -14 209 322 0 0 chr4 119184929 119184988 -65103674 - L2 LINE L2 -9 3304 3246 318 267 58 42 chr4 119185731 119185851 -65102811 + MIR3 SINE MIR 54 175 -33 236 182 0 18 chr4 119186722 119186777 -65101885 + GA-rich Low_complexity Low_complexity 3 56 0 224 280 179 48 chr4 119188723 119188891 -65099771 + MIR3 SINE MIR 8 197 -11 21 71 0 0 chr4 119189054 119189096 -65099566 + AT_rich Low_complexity Low_complexity 1 42 0 556 333 6 0 chr4 119189908 119190085 -65098577 - MIR SINE MIR -5 257 80 1498 267 144 34 chr4 119191220 119192200 -65096462 - L2 LINE L2 -28 3285 2198 344 345 76 5 chr4 119192202 119192425 -65096237 + L1MC/D LINE L1 5404 5642 -2166 853 161 99 0 chr4 119195095 119195257 -65093405 + AluJb SINE Alu 134 311 -1 297 269 121 18 chr4 119195294 119195556 -65093106 + L1ME LINE L1 5435 5724 -397 1709 194 28 17 chr4 119195995 119196356 -65092306 + MLT1A1 LTR MaLR 1 365 0 3275 141 18 35 chr4 119196732 119197300 -65091362 + L1MA9 LINE L1 5521 6078 -234 2641 108 0 34 chr4 119197301 119197680 -65090982 + MER1A DNA MER1_type 3 368 -161 2086 146 0 0 chr4 119198171 119198465 -65090197 + AluSx SINE Alu 1 294 -18 21 89 0 0 chr4 119198564 119198620 -65090042 + AT_rich Low_complexity Low_complexity 1 56 0 23 0 0 0 chr4 119199364 119199387 -65089275 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr4 119200774 119200800 -65087862 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr4 119201452 119201473 -65087189 + AT_rich Low_complexity Low_complexity 1 21 0 436 268 39 52 chr4 119201813 119201966 -65086696 - MIR SINE MIR -13 249 99 282 360 50 22 chr4 119201987 119202126 -65086536 - MIR3 SINE MIR -35 173 31 1860 184 0 3 chr4 119202774 119203073 -65085589 + AluJb SINE Alu 1 298 -14 1007 250 15 4 chr4 119203104 119203376 -65085286 + L1MA9 LINE L1 6000 6274 -38 21 0 0 0 chr4 119204417 119204438 -65084224 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr4 119204506 119204554 -65084108 + AT_rich Low_complexity Low_complexity 1 48 0 988 131 0 0 chr4 119204807 119204952 -65083710 + L1PA5 LINE L1 1 145 -6001 32433 79 45 3 chr4 119204952 119209929 -65078733 + L1PA5 LINE L1 693 5884 -270 4474 136 228 116 chr4 119209931 119211455 -65077207 - pTR5 LTR ERV1 0 2438 744 2106 63 0 0 chr4 119211455 119211724 -65076938 + L1PA5 LINE L1 5880 6148 -6 1958 124 0 3 chr4 119212244 119212527 -65076135 + MER1A DNA MER1_type 248 529 0 550 175 62 0 chr4 119212793 119212890 -65075772 + U6 snRNA snRNA 1 103 -4 584 152 10 0 chr4 119213954 119214053 -65074609 - LTR29 LTR ERV1 -66 556 457 2425 125 36 9 chr4 119214062 119215042 -65073620 - L1MA3 LINE L1 -1 6304 5209 22 0 0 0 chr4 119216986 119217008 -65071654 + AT_rich Low_complexity Low_complexity 1 22 0 30 69 0 0 chr4 119219845 119219903 -65068759 + AT_rich Low_complexity Low_complexity 1 58 0 22 0 0 0 chr4 119220702 119220724 -65067938 + AT_rich Low_complexity Low_complexity 1 22 0 300 223 121 42 chr4 119221209 119221375 -65067287 - L1ME4a LINE L1 -74 6047 5869 256 134 75 75 chr4 119221413 119221480 -65067182 - L1ME4a LINE L1 -337 5784 5718 660 12 0 0 chr4 119221555 119221635 -65067027 + L1PA3 LINE L1 6073 6152 -3 21 0 0 0 chr4 119221796 119221817 -65066845 + AT_rich Low_complexity Low_complexity 1 21 0 1882 199 20 0 chr4 119222169 119222526 -65066136 + MLT1A1 LTR MaLR 1 364 -1 325 327 19 10 chr4 119222858 119222962 -65065700 - MIR3 SINE MIR -49 159 55 229 304 0 14 chr4 119224569 119224638 -65064024 + GA-rich Low_complexity Low_complexity 3 70 0 22 0 0 0 chr4 119225331 119225353 -65063309 + AT_rich Low_complexity Low_complexity 1 22 0 2120 168 72 2 chr4 119225879 119226283 -65062379 + MSTB1 LTR MaLR 1 432 0 223 221 15 29 chr4 119226713 119226781 -65061881 + T-rich Low_complexity Low_complexity 2 68 0 26 0 0 0 chr4 119227061 119227087 -65061575 + AT_rich Low_complexity Low_complexity 1 26 0 741 266 61 9 chr4 119227169 119227398 -65061264 + MIR SINE MIR 21 261 -1 690 246 27 32 chr4 119227565 119227752 -65060910 + L2 LINE L2 2449 2634 -680 460 222 28 9 chr4 119227971 119228079 -65060583 + MER81 DNA DNA 2 111 -3 181 308 13 39 chr4 119228400 119228478 -65060184 + L2 LINE L2 2985 3060 -212 628 267 27 32 chr4 119228779 119228966 -65059696 - L2 LINE L2 -680 2634 2449 272 207 81 90 chr4 119229889 119230000 -65058662 + MIR SINE MIR 37 146 -116 575 297 77 14 chr4 119230193 119230415 -65058247 + MIR SINE MIR 8 243 -19 316 291 18 18 chr4 119230459 119230569 -65058093 - MIR3 SINE MIR -54 154 45 293 277 92 17 chr4 119230946 119231065 -65057597 + MIR3 SINE MIR 54 181 -27 186 218 36 18 chr4 119231361 119231416 -65057246 + MIR3 SINE MIR 148 203 -5 564 283 52 23 chr4 119232364 119232641 -65056021 + MLT1I LTR MaLR 95 427 -23 22 56 0 0 chr4 119232669 119232705 -65055957 + AT_rich Low_complexity Low_complexity 1 36 0 2172 112 62 14 chr4 119234206 119234562 -65054100 - THE1C LTR MaLR -2 373 1 325 331 31 31 chr4 119234656 119234786 -65053876 + L2 LINE L2 3142 3271 -1 3866 180 35 8 chr4 119235200 119235911 -65052751 + MER44D DNA MER2_type 1 602 -3 1104 250 20 64 chr4 119236305 119236322 -65052340 + MLT2B1 LTR ERVL 1 17 -503 2054 151 14 22 chr4 119236322 119236687 -65051975 + MLT1A1 LTR MaLR 4 365 0 1104 250 20 64 chr4 119236687 119237073 -65051589 + MLT2B1 LTR ERVL 17 386 -134 1789 131 131 27 chr4 119237512 119237841 -65050821 + THE1B LTR MaLR 2 364 0 218 364 31 35 chr4 119237915 119238173 -65050489 - L2 LINE L2 -1271 2043 1787 31 58 0 0 chr4 119238403 119238455 -65050207 + AT_rich Low_complexity Low_complexity 1 52 0 415 279 174 19 chr4 119238810 119238971 -65049691 + MIR SINE MIR 38 223 -39 1426 73 39 0 chr4 119240387 119240592 -65048070 - L1MA5A LINE L1 -12 6285 6073 1204 118 5 36 chr4 119240592 119240787 -65047875 - MER1B DNA MER1_type -2 337 149 6311 196 43 22 chr4 119240787 119242148 -65046514 - MER52A LTR ERV1 0 1755 366 342 239 11 7 chr4 119242128 119242265 -65046397 - MER52C LTR ERV1 -1021 257 56 * 283 239 0 0 chr4 119242887 119242954 -65045708 - MER52A LTR ERV1 -1688 67 1 592 172 172 0 chr4 119242954 119243082 -65045580 - MER1B DNA MER1_type -145 152 3 445 32 0 0 chr4 119243093 119243155 -65045507 - L1MA5A LINE L1 -225 6072 6011 208 306 150 12 chr4 119244542 119244702 -65043960 - L2 LINE L2 -9 3304 3123 37 76 0 0 chr4 119244724 119244803 -65043859 + AT_rich Low_complexity Low_complexity 1 79 0 2034 111 7 24 chr4 119245131 119245420 -65043242 + AluSx SINE Alu 1 284 -28 28 0 0 0 chr4 119245421 119245449 -65043213 + AT_rich Low_complexity Low_complexity 1 28 0 1529 186 61 3 chr4 119245502 119245797 -65042865 + AluJo SINE Alu 1 312 0 299 198 63 103 chr4 119246340 119246377 -65042285 - MIR SINE MIR -2 260 223 14146 126 32 18 chr4 119246377 119248756 -65039906 + Tigger1 DNA MER2_type 1 2414 -4 299 198 63 103 chr4 119248756 119248844 -65039818 - MIR SINE MIR -39 223 140 401 333 9 0 chr4 119248877 119248985 -65039677 + L2 LINE L2 3164 3272 0 192 263 150 38 chr4 119248983 119249063 -65039599 - MIR SINE MIR -154 108 20 * 1218 195 83 136 chr4 119249254 119249783 -65038879 + MLT1F LTR MaLR 42 542 0 26 30 0 0 chr4 119250303 119250336 -65038326 + AT_rich Low_complexity Low_complexity 1 33 0 615 320 23 39 chr4 119250448 119250707 -65037955 + MIR SINE MIR 2 256 -6 225 228 24 118 chr4 119252690 119252817 -65035845 + L2 LINE L2 2720 2834 -480 1054 187 57 54 chr4 119254327 119254729 -65033933 + MLT2D LTR ERVL 2 400 -64 313 254 55 7 chr4 119254744 119254880 -65033782 - L1MCa LINE L1 -1339 6983 1995 796 253 0 0 chr4 119254880 119255042 -65033620 - AluJb SINE Alu -12 300 139 24 0 0 0 chr4 119256573 119256597 -65032065 + AT_rich Low_complexity Low_complexity 1 24 0 815 295 137 37 chr4 119256646 119257107 -65031555 - L2 LINE L2 0 3313 2807 1920 146 3 10 chr4 119259164 119259458 -65029204 + AluSx SINE Alu 11 302 -10 217 231 0 0 chr4 119260648 119260687 -65027975 + (CACG)n Simple_repeat Simple_repeat 1 39 0 184 282 101 101 chr4 119260958 119261167 -65027495 + MIR SINE MIR 13 221 -41 1648 165 13 60 chr4 119261290 119261605 -65027057 - AluJo SINE Alu -12 300 1 592 281 198 19 chr4 119261770 119262144 -65026518 - L3 LINE CR1 -201 1376 936 24 0 0 0 chr4 119262468 119262492 -65026170 + AT_rich Low_complexity Low_complexity 1 24 0 1798 192 0 0 chr4 119263092 119263389 -65025273 - AluSx SINE Alu -15 297 1 2364 104 3 0 chr4 119263597 119263906 -65024756 + AluSx SINE Alu 1 310 -2 1343 246 36 92 chr4 119264624 119264958 -65023704 + MER68 LTR ERV1 11 362 -200 1893 170 3 0 chr4 119264958 119265258 -65023404 + AluJo SINE Alu 1 301 -11 1343 246 36 92 chr4 119265258 119265273 -65023389 + MER68 LTR ERV1 362 376 -186 315 0 0 0 chr4 119265273 119265308 -65023354 + (CA)n Simple_repeat Simple_repeat 2 36 0 1343 246 36 92 chr4 119265308 119265542 -65023120 + MER68 LTR ERV1 376 562 0 901 252 65 12 chr4 119268545 119268791 -65019871 - MIR SINE MIR -1 261 3 1399 208 131 48 chr4 119268831 119269348 -65019314 + MLT1E2 LTR MaLR 3 590 -64 23 0 0 0 chr4 119269432 119269455 -65019207 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 119269511 119269539 -65019123 + AT_rich Low_complexity Low_complexity 1 28 0 762 261 42 31 chr4 119270335 119270596 -65018066 - MER46C DNA MER2_type -73 265 2 476 257 23 23 chr4 119272073 119272248 -65016414 + GA-rich Low_complexity Low_complexity 3 177 0 892 295 95 48 chr4 119273059 119273276 -65015386 - L3 LINE CR1 -42 1535 1330 180 0 0 0 chr4 119273276 119273296 -65015366 + (TTG)n Simple_repeat Simple_repeat 2 21 0 892 295 95 48 chr4 119273296 119273644 -65015018 - L3 LINE CR1 -247 1330 943 2120 198 81 8 chr4 119273818 119273953 -65014709 + L1MB2 LINE L1 5448 5572 -599 2417 86 3 0 chr4 119273953 119274256 -65014406 + AluSg SINE Alu 1 304 -6 2120 198 81 8 chr4 119274256 119274589 -65014073 + L1MB2 LINE L1 5572 5950 -221 1379 157 24 35 chr4 119274592 119274847 -65013815 + AluJo SINE Alu 43 294 -18 1144 136 30 47 chr4 119274847 119275082 -65013580 + L1MB2 LINE L1 5931 6161 -10 1952 161 0 7 chr4 119275082 119275381 -65013281 - AluSx SINE Alu -11 301 5 455 293 187 4 chr4 119275472 119275697 -65012965 - L3 LINE CR1 -907 670 405 207 331 29 65 chr4 119275866 119276005 -65012657 - L3 LINE CR1 -1443 134 1 1456 132 8 4 chr4 119276044 119276294 -65012368 - L1MA5 LINE L1 0 6300 6050 324 322 87 19 chr4 119276614 119276822 -65011840 + L1MC2 LINE L1 3942 4163 -1983 324 273 0 0 chr4 119277363 119277440 -65011222 + MER117 DNA MER1_type 18 94 -103 25 31 0 0 chr4 119279112 119279144 -65009518 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 119279580 119279601 -65009061 + AT_rich Low_complexity Low_complexity 1 21 0 2057 123 0 0 chr4 119279604 119279916 -65008746 + AluSx SINE Alu 1 312 0 3659 176 48 21 chr4 119280361 119281402 -65007260 + L1MC2 LINE L1 4859 5924 -420 399 119 0 17 chr4 119281404 119281463 -65007199 - MER8 DNA MER2_type -3 236 179 * 2217 176 66 2 chr4 119281451 119281876 -65006786 + Tigger2 DNA MER2_type 2267 2718 0 2019 159 53 15 chr4 119281878 119282275 -65006387 + L1MC2 LINE L1 5924 6335 -9 6978 200 107 41 chr4 119282463 119284297 -65004365 - Charlie5 DNA MER1_type 0 2624 584 1867 78 0 4 chr4 119284297 119284529 -65004133 - AluSq SINE Alu -82 231 1 6978 200 107 41 chr4 119284529 119285152 -65003510 - Charlie5 DNA MER1_type -2040 584 4 1545 70 0 0 chr4 119285624 119285824 -65002838 + L1PA5 LINE L1 5953 6152 -2 801 191 43 0 chr4 119285939 119286101 -65002561 + L1MB7 LINE L1 6008 6176 -8 189 306 0 32 chr4 119286683 119286745 -65001917 + L2 LINE L2 3249 3308 -5 2050 71 99 0 chr4 119286963 119287246 -65001416 + AluY SINE Alu 1 311 0 287 309 109 12 chr4 119287380 119287545 -65001117 + MLT1L LTR MaLR 394 574 -41 1845 155 0 0 chr4 119287690 119287968 -65000694 + AluSx SINE Alu 24 301 -11 1003 280 108 31 chr4 119288985 119289094 -64999568 + L2 LINE L2 2360 2459 -855 2316 105 0 0 chr4 119289094 119289399 -64999263 - AluSg SINE Alu -5 305 1 1003 280 108 31 chr4 119289399 119289800 -64998862 + L2 LINE L2 2459 2909 -405 2338 253 127 17 chr4 119289972 119291349 -64997313 - L1ME3A LINE L1 -5 6234 4702 22 0 0 0 chr4 119291370 119291392 -64997270 + AT_rich Low_complexity Low_complexity 1 22 0 5103 113 0 0 chr4 119291421 119291891 -64996771 - L1PA15 LINE L1 -6 6159 5690 2728 129 26 2 chr4 119291891 119292309 -64996353 - MSTA LTR MaLR 0 428 1 5103 113 0 0 chr4 119292309 119292933 -64995729 - L1PA15 LINE L1 -474 5691 5039 4085 243 13 21 chr4 119292933 119293493 -64995169 - L1P LINE L1 -2551 3595 3032 1871 133 37 0 chr4 119293493 119293763 -64994899 - AluSx SINE Alu -21 291 12 4085 243 13 21 chr4 119293763 119294351 -64994311 - L1P LINE L1 -3114 3032 2456 388 326 72 30 chr4 119294999 119295303 -64993359 - L1PA12 LINE L1 -7258 323 7 755 289 130 26 chr4 119295335 119296025 -64992637 - L1MDa LINE L1 -3397 2818 2091 614 231 28 28 chr4 119296205 119296387 -64992275 - L1MDa LINE L1 -4583 1813 1632 1001 190 72 0 chr4 119297532 119297727 -64990935 - AluJo SINE Alu -10 302 94 285 329 0 0 chr4 119297892 119297965 -64990697 - AluJ/FLAM SINE Alu -229 73 1 270 0 0 0 chr4 119298505 119298535 -64990127 + (CA)n Simple_repeat Simple_repeat 1 30 0 2279 93 0 0 chr4 119298536 119298827 -64989835 - AluY SINE Alu -20 291 1 491 295 95 36 chr4 119299066 119299868 -64988794 - L1MDa LINE L1 -4631 1584 792 260 301 57 41 chr4 119300851 119300974 -64987688 + L2 LINE L2 3099 3223 -90 3815 181 26 77 chr4 119301671 119302579 -64986083 - MER21B LTR ERV1 -1 862 1 23 0 0 0 chr4 119303192 119303215 -64985447 + AT_rich Low_complexity Low_complexity 1 23 0 943 151 7 0 chr4 119303216 119303368 -64985294 - L1PB2 LINE L1 -2 6149 5997 7538 123 3 0 chr4 119303870 119305022 -64983640 + L1P LINE L1 1278 2432 -3714 487 262 42 66 chr4 119305128 119305353 -64983309 + L1MC/D LINE L1 5455 5672 -474 22 0 0 0 chr4 119306534 119306556 -64982106 + AT_rich Low_complexity Low_complexity 1 22 0 9438 118 11 8 chr4 119306673 119308081 -64980581 - L1P3 LINE L1 -5044 1417 6 629 128 0 0 chr4 119308123 119308217 -64980445 + AluS SINE Alu 2 95 -218 470 87 39 0 chr4 119308595 119308698 -64979964 + (TA)n Simple_repeat Simple_repeat 1 107 0 21 0 0 0 chr4 119309278 119309299 -64979363 + AT_rich Low_complexity Low_complexity 1 21 0 1635 191 67 13 chr4 119309847 119310273 -64978389 + MLT2C1 LTR ERVL 10 397 0 1455 183 48 84 chr4 119310389 119310518 -64978144 + MER7A DNA MER2_type 2 134 -2904 1516 183 18 7 chr4 119310518 119310797 -64977865 - AluJo SINE Alu -30 282 1 1455 183 48 84 chr4 119310797 119311023 -64977639 + MER7A DNA MER2_type 134 342 -4 2320 118 30 0 chr4 119311200 119311565 -64977097 - L1PBa LINE L1 -4204 2659 2284 207 0 0 0 chr4 119312237 119312260 -64976402 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1752 183 3 0 chr4 119312262 119312547 -64976115 - AluJo SINE Alu -26 286 1 11141 95 2 3 chr4 119313055 119314668 -64973994 + L1P LINE L1 2452 4063 -2083 4436 164 26 29 chr4 119314673 119315656 -64973006 - MER11C LTR ERVK -4 1067 1 5041 86 7 3 chr4 119315656 119316357 -64972305 + L1P LINE L1 4058 4761 -1385 25 31 0 0 chr4 119316644 119316676 -64971986 + AT_rich Low_complexity Low_complexity 1 32 0 2207 114 3 0 chr4 119316865 119317164 -64971498 + AluSq SINE Alu 1 300 -13 194 311 101 42 chr4 119317895 119318014 -64970648 + MER5A DNA MER1_type 7 132 -57 300 255 43 53 chr4 119318352 119318446 -64970216 - MIR3 SINE MIR -7 201 109 220 247 124 45 chr4 119318876 119318965 -64969697 - MIR SINE MIR -86 176 81 378 143 13 26 chr4 119320219 119320296 -64968366 + MER116 DNA Mariner 5 80 0 870 238 66 27 chr4 119320328 119320584 -64968078 - Charlie7 DNA MER1_type -1957 655 390 472 332 75 13 chr4 119320698 119320924 -64967738 - Charlie8 DNA MER1_type -2153 264 25 398 235 41 10 chr4 119321194 119321292 -64967370 + MIR3 SINE MIR 94 194 -14 970 241 88 78 chr4 119321416 119322192 -64966470 + L1MC4 LINE L1 6963 7746 -296 6623 68 14 5 chr4 119322372 119323253 -64965409 + L1PA7 LINE L1 5255 6143 -11 2019 170 8 6 chr4 119323260 119323624 -64965038 - MLT1A1 LTR MaLR 0 365 1 237 159 0 0 chr4 119323827 119323871 -64964791 + CT-rich Low_complexity Low_complexity 1 44 0 2019 121 40 0 chr4 119324199 119324496 -64964166 + AluSg SINE Alu 1 309 -1 2392 183 16 0 chr4 119324567 119324993 -64963669 - MLT1C LTR MaLR 0 467 35 2397 100 0 0 chr4 119324997 119325307 -64963355 + AluSx SINE Alu 1 310 -2 1878 173 38 160 chr4 119325319 119326128 -64962534 + LTR8A LTR ERV1 1 727 0 255 128 0 0 chr4 119326128 119326164 -64962498 - MLT1C LTR MaLR -431 36 1 198 143 0 0 chr4 119326629 119326664 -64961998 + (T)n Simple_repeat Simple_repeat 1 35 0 718 98 20 0 chr4 119326775 119326877 -64961785 - BC200 scRNA scRNA -96 104 1 273 257 284 27 chr4 119326891 119327039 -64961623 - MIR SINE MIR -74 188 3 1944 97 104 0 chr4 119328243 119328511 -64960151 - AluY SINE Alu -14 297 2 25 83 0 0 chr4 119328518 119328578 -64960084 + AT_rich Low_complexity Low_complexity 1 60 0 799 196 0 0 chr4 119329115 119329248 -64959414 - FLAM_C SINE Alu 0 133 1 26 30 0 0 chr4 119329687 119329720 -64958942 + AT_rich Low_complexity Low_complexity 1 33 0 2225 122 7 0 chr4 119330575 119330878 -64957784 - AluSx SINE Alu -7 305 1 329 193 148 11 chr4 119331296 119331384 -64957278 + L2 LINE L2 3214 3313 0 240 324 59 10 chr4 119331754 119331856 -64956806 + MIR SINE MIR 152 258 -4 3964 118 7 5 chr4 119331927 119332528 -64956134 - LTR43 LTR ERV1 0 602 1 345 82 131 16 chr4 119333055 119333116 -64955546 + MER57B LTR ERV1 3 70 -364 2338 133 68 2 chr4 119333735 119334147 -64954515 + L1MB2 LINE L1 5731 6169 -2 812 335 67 49 chr4 119334387 119335234 -64953428 + L1M4 LINE L1 2923 3789 -2357 1593 162 30 27 chr4 119335234 119335530 -64953132 + AluJo SINE Alu 1 297 -15 812 335 67 49 chr4 119335530 119335615 -64953047 + L1M4 LINE L1 3789 3871 -2275 2196 174 37 2 chr4 119335684 119336115 -64952547 + MER44D DNA MER2_type 2 502 -103 208 225 0 0 chr4 119336115 119336155 -64952507 + (TG)n Simple_repeat Simple_repeat 2 41 0 252 338 13 0 chr4 119336247 119336324 -64952338 + MIR SINE MIR 7 84 -178 1809 135 0 8 chr4 119337422 119337717 -64950945 + AluSq SINE Alu 31 313 0 449 123 0 0 chr4 119337957 119338030 -64950632 + MER57B LTR ERV1 362 434 0 1934 108 7 47 chr4 119338586 119338912 -64949750 + AluSq SINE Alu 1 314 0 23 33 0 0 chr4 119340260 119340290 -64948372 + AT_rich Low_complexity Low_complexity 1 30 0 232 175 0 0 chr4 119341333 119341373 -64947289 - L2 LINE L2 -11 3261 3222 1300 167 37 145 chr4 119341386 119341826 -64946836 - MER69 DNA AcHobo 0 2526 2153 2168 135 102 20 chr4 119341826 119342286 -64946376 - LTR54B LTR ERV1 0 498 1 1300 167 37 145 chr4 119342286 119342384 -64946278 - MER69 DNA AcHobo -373 2153 2046 333 0 0 0 chr4 119342427 119342464 -64946198 + (TG)n Simple_repeat Simple_repeat 2 38 0 1046 153 37 11 chr4 119342564 119342754 -64945908 + Tigger2 DNA MER2_type 2524 2718 0 267 321 49 0 chr4 119342771 119342852 -64945810 - MIR SINE MIR -165 97 13 320 273 56 98 chr4 119343391 119343534 -64945128 - MIR3 SINE MIR -24 184 48 240 275 0 14 chr4 119344080 119344149 -64944513 + MLT1J LTR MaLR 241 308 -203 849 156 21 26 chr4 119345308 119345500 -64943162 - THE1C LTR MaLR 0 375 185 2945 126 27 2 chr4 119345519 119345995 -64942667 + L1PB3 LINE L1 5666 6153 -1 232 143 127 16 chr4 119346030 119346093 -64942569 + L1MCc LINE L1 52 121 -6302 517 313 65 35 chr4 119346132 119346471 -64942191 + L1MCc LINE L1 249 597 -5826 369 286 18 50 chr4 119346601 119346821 -64941841 + L1MCc LINE L1 781 993 -5430 589 256 57 11 chr4 119346827 119346948 -64941714 + L1MCc LINE L1 2383 2497 -4625 2027 132 7 0 chr4 119346948 119347274 -64941388 + AluSx SINE Alu 1 328 0 589 256 57 11 chr4 119347274 119347413 -64941249 + L1MCc LINE L1 2497 2656 -4466 2205 232 82 48 chr4 119347450 119348455 -64940207 + L2 LINE L2 2282 3310 -3 245 280 189 14 chr4 119348734 119348877 -64939785 + MIR SINE MIR 47 214 -48 245 263 63 63 chr4 119348875 119348970 -64939692 + L2 LINE L2 3215 3309 -4 189 0 0 0 chr4 119349477 119349498 -64939164 + (T)n Simple_repeat Simple_repeat 1 21 0 349 181 36 36 chr4 119349621 119349704 -64938958 + MIR3 SINE MIR 85 167 -41 729 121 87 87 chr4 119349716 119349889 -64938773 - MER49 LTR ERV1 -9 914 742 680 260 62 52 chr4 119349899 119350207 -64938455 + L2 LINE L2 2967 3277 -36 22 0 0 0 chr4 119352803 119352825 -64935837 + GC_rich Low_complexity Low_complexity 1 22 0 30 45 0 0 chr4 119353031 119353075 -64935587 + GC_rich Low_complexity Low_complexity 1 44 0 741 143 23 23 chr4 119354077 119354210 -64934452 - FLAM_C SINE Alu 0 133 1 188 214 0 0 chr4 119354509 119354551 -64934111 + L2 LINE L2 3267 3308 -5 1657 207 31 20 chr4 119356232 119356551 -64932111 + MSTD LTR MaLR 1 326 -70 1364 200 52 24 chr4 119356551 119356720 -64931942 - AluJo SINE Alu -14 298 116 539 29 14 0 chr4 119356720 119356789 -64931873 + (TTTTA)n Simple_repeat Simple_repeat 4 73 0 1364 200 52 24 chr4 119356789 119356909 -64931753 - AluJo SINE Alu -196 116 1 1657 207 31 20 chr4 119356909 119356981 -64931681 + MSTD LTR MaLR 326 396 0 5399 277 100 27 chr4 119356983 119358599 -64930063 + MSTD-int LTR MaLR 2 1735 0 1472 198 117 14 chr4 119358599 119358958 -64929704 + MSTD LTR MaLR 1 396 0 353 290 37 0 chr4 119359218 119359325 -64929337 - MER39-int LTR ERV1 -4534 402 292 2275 148 55 17 chr4 119359335 119359753 -64928909 - Tigger2a DNA MER2_type 0 434 1 330 67 0 0 chr4 119359762 119359807 -64928855 + (GA)n Simple_repeat Simple_repeat 1 45 0 758 205 44 104 chr4 119359810 119360108 -64928554 - MER39-int LTR ERV1 -4675 1656 1377 258 246 64 64 chr4 119360385 119360588 -64928074 - MER39-int LTR ERV1 -6089 242 40 1150 220 43 58 chr4 119360672 119361067 -64927595 - MER39 LTR ERV1 -59 648 260 329 312 20 80 chr4 119361147 119361316 -64927346 - MIR SINE MIR -62 146 3 1582 182 33 40 chr4 119363776 119364078 -64924584 + AluJo SINE Alu 1 300 -12 1671 141 32 0 chr4 119364667 119364916 -64923746 + AluSx SINE Alu 41 297 -15 2408 81 7 7 chr4 119365236 119365545 -64923117 - AluY SINE Alu -2 309 1 252 0 0 0 chr4 119365629 119365657 -64923005 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 767 213 13 13 chr4 119365657 119365812 -64922850 - FAM SINE Alu -18 157 3 182 314 14 29 chr4 119367099 119367169 -64921493 + L2 LINE L2 3204 3272 0 387 198 24 103 chr4 119369413 119369539 -64919123 + MER39 LTR ERV1 330 445 -262 36 40 0 0 chr4 119369582 119369632 -64919030 + AT_rich Low_complexity Low_complexity 1 50 0 333 247 86 0 chr4 119372099 119372192 -64916470 + LTR37B LTR ERV1 199 299 -169 238 156 31 0 chr4 119372205 119372269 -64916393 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 303 236 51 6 chr4 119372273 119372412 -64916250 + LTR37A LTR ERV1 294 460 -8 22 35 0 0 chr4 119372423 119372452 -64916210 + AT_rich Low_complexity Low_complexity 1 29 0 622 331 43 25 chr4 119372577 119372855 -64915807 + L2 LINE L2 2551 2833 -481 301 85 0 51 chr4 119373006 119373065 -64915597 - Alu SINE Alu -247 56 1 1100 237 75 105 chr4 119374529 119375269 -64913393 - L1MC4a LINE L1 -309 5812 5321 620 324 118 34 chr4 119375389 119376006 -64912656 - L1MC4a LINE L1 -1110 5036 4353 1416 254 99 14 chr4 119376018 119376515 -64912147 - MER34 LTR ERV1 -1 541 3 253 337 55 25 chr4 119376527 119376729 -64911933 - L1MC4a LINE L1 -1857 4289 4082 312 275 119 38 chr4 119376828 119376988 -64911674 - L1MC4a LINE L1 -2163 3983 3811 21 0 0 0 chr4 119377487 119377508 -64911154 + AT_rich Low_complexity Low_complexity 1 21 0 942 192 0 0 chr4 119377508 119377690 -64910972 - L1 LINE L1 -2139 4007 3826 2328 230 9 0 chr4 119377790 119378334 -64910328 - L1 LINE L1 -3002 3144 2596 30720 120 12 55 chr4 119378347 119384765 -64903897 - L1PA7 LINE L1 -11 6143 13 743 187 40 35 chr4 119384749 119384947 -64903715 - L1 LINE L1 -3501 2645 2447 * 429 322 20 7 chr4 119485004 119485156 -64803506 - MIR3 SINE MIR -19 189 36 919 187 8 5 chr4 119485282 119485468 -64803194 - MLT1F LTR MaLR 0 530 356 324 114 0 0 chr4 119486334 119486378 -64802284 + (GAAAA)n Simple_repeat Simple_repeat 3 46 0 212 253 54 102 chr4 119486718 119486904 -64801758 + L2 LINE L2 2893 3069 -203 468 244 38 19 chr4 119487482 119487642 -64801020 - MIR3 SINE MIR -6 202 40 259 180 16 16 chr4 119488074 119488135 -64800527 - MER20 DNA MER1_type -25 194 134 228 208 0 21 chr4 119488786 119488834 -64799828 + MER20 DNA MER1_type 1 47 -172 2317 90 3 3 chr4 119488876 119489175 -64799487 - AluSx SINE Alu -13 299 1 2117 131 0 28 chr4 119489654 119489975 -64798687 - AluSx SINE Alu 0 312 1 360 125 0 0 chr4 119489977 119490033 -64798629 + MER3 DNA MER1_type 154 209 0 291 160 0 0 chr4 119489990 119490040 -64798622 - MER3 DNA MER1_type -119 90 41 * 512 294 99 55 chr4 119490674 119491076 -64797586 - LTR16B LTR ERVL -12 452 33 180 0 0 0 chr4 119492120 119492140 -64796522 + (T)n Simple_repeat Simple_repeat 1 20 0 192 40 0 0 chr4 119492224 119492249 -64796413 + (CA)n Simple_repeat Simple_repeat 1 25 0 540 337 23 31 chr4 119492552 119492810 -64795852 + MIR SINE MIR 7 262 0 431 329 36 113 chr4 119493870 119494232 -64794430 - L2 LINE L2 -10 3262 2929 2370 157 44 5 chr4 119494256 119494689 -64793973 - MLT1C LTR MaLR 0 467 18 435 341 13 18 chr4 119494689 119494915 -64793747 - L2 LINE L2 -433 2881 2657 1729 160 36 0 chr4 119495348 119495651 -64793011 - AluJb SINE Alu 0 313 1 464 288 140 32 chr4 119496265 119496637 -64792025 - MLT1J LTR MaLR -56 455 44 266 265 204 0 chr4 119496664 119496762 -64791900 - MIR SINE MIR -58 150 33 2529 62 3 0 chr4 119497072 119497380 -64791282 - AluY SINE Alu -2 309 1 1496 180 62 10 chr4 119499721 119500010 -64788652 - AluJb SINE Alu -6 306 3 344 281 55 16 chr4 119500392 119500520 -64788142 - MIR SINE MIR -83 179 47 373 314 59 24 chr4 119500834 119501003 -64787659 + L2 LINE L2 3138 3312 -1 252 183 200 0 chr4 119501054 119501114 -64787548 - L2 LINE L2 -2 3311 3240 426 271 12 30 chr4 119501198 119501364 -64787298 - MLT1K LTR MaLR -57 531 369 1320 326 119 19 chr4 119501431 119502290 -64786372 - L2 LINE L2 -684 2630 1686 476 176 39 10 chr4 119502310 119502412 -64786250 - MLT1E2 LTR MaLR -181 324 220 342 305 62 0 chr4 119502477 119502605 -64786057 + L2 LINE L2 1839 1974 -1340 661 209 40 0 chr4 119502612 119502760 -64785902 - MLT1E2 LTR MaLR -460 166 13 212 288 68 0 chr4 119503923 119503982 -64784680 + L2 LINE L2 3250 3312 -1 482 276 37 8 chr4 119504970 119505104 -64783558 + MIR SINE MIR 1 138 -124 200 314 106 81 chr4 119505192 119505347 -64783315 + L2 LINE L2 1242 1392 -1922 562 256 8 15 chr4 119505347 119505480 -64783182 + MER94 DNA DNA 3 134 0 200 314 106 81 chr4 119505480 119505719 -64782943 + L2 LINE L2 1392 1646 -1668 769 199 12 6 chr4 119505780 119505951 -64782711 + MLT1D LTR MaLR 334 505 0 4716 231 67 30 chr4 119506496 119507634 -64781028 - L1M4 LINE L1 -1094 5052 3829 434 59 176 0 chr4 119507634 119507702 -64780960 + MADE1 DNA Mariner 1 80 0 4716 231 67 30 chr4 119507702 119508264 -64780398 - L1M4 LINE L1 -2317 3829 3289 314 345 103 18 chr4 119508334 119508499 -64780163 - L1ME LINE L1 -5573 957 779 268 339 9 0 chr4 119508916 119509031 -64779631 - L1ME LINE L1 -6391 149 34 360 348 114 6 chr4 119509826 119509984 -64778678 - MIR3 SINE MIR -6 202 28 219 362 38 0 chr4 119510288 119510393 -64778269 - L2 LINE L2 -14 3258 3150 319 253 171 35 chr4 119511816 119511986 -64776676 - MIR SINE MIR 0 262 70 288 359 47 0 chr4 119512093 119512199 -64776463 - MIR SINE MIR -59 149 39 447 337 20 35 chr4 119512398 119512597 -64776065 - MIR3 SINE MIR -7 201 6 270 143 0 0 chr4 119513413 119513462 -64775200 + (GGAA)n Simple_repeat Simple_repeat 2 50 0 436 278 13 26 chr4 119513680 119513831 -64774831 + MIR SINE MIR 90 238 -24 3135 106 15 42 chr4 119513897 119514442 -64774220 - L1MA1 LINE L1 -4 6298 5769 25788 136 18 22 chr4 119514453 119518234 -64770428 - L1PA7 LINE L1 -17 6452 2604 2248 115 3 0 chr4 119518234 119518529 -64770133 + AluSx SINE Alu 1 296 -16 25788 136 18 22 chr4 119518529 119521028 -64767634 - L1PA7 LINE L1 -3865 2604 98 650 239 170 0 chr4 119521025 119521255 -64767407 - L1M4 LINE L1 -3494 2652 2384 * 198 0 0 0 chr4 119522262 119522284 -64766378 + (T)n Simple_repeat Simple_repeat 1 22 0 483 282 33 13 chr4 119522315 119522519 -64766143 - L1MC/D LINE L1 -739 5552 5377 2028 147 39 0 chr4 119522538 119522871 -64765791 - MLT1A1 LTR MaLR -19 346 1 728 187 32 0 chr4 119522901 119523056 -64765606 - L1MC2 LINE L1 -10 6334 6175 5931 163 83 84 chr4 119523063 119523470 -64765192 - L1MC3 LINE L1 -191 7594 7188 272 259 12 12 chr4 119523470 119523555 -64765107 - MLT1F1 LTR MaLR -448 119 35 5931 163 83 84 chr4 119523555 119524650 -64764012 - L1MC3 LINE L1 -597 7188 6009 587 366 42 0 chr4 119524650 119525008 -64763654 - L1MC/D LINE L1 -840 5306 4934 2198 116 7 0 chr4 119525041 119525335 -64763327 + AluSq SINE Alu 1 296 -17 227 304 14 43 chr4 119525523 119525730 -64762932 - L1MC/D LINE L1 -1469 4677 4477 2006 123 120 6 chr4 119525988 119526313 -64762349 + THE1B LTR MaLR 3 364 0 1007 309 26 0 chr4 119526557 119526864 -64761798 - MER115 DNA AcHobo -86 607 293 22 0 0 0 chr4 119527538 119527560 -64761102 + AT_rich Low_complexity Low_complexity 1 22 0 1639 185 7 0 chr4 119528562 119528838 -64759824 + AluJo SINE Alu 2 279 -33 573 262 122 12 chr4 119528848 119529020 -64759642 + LTR1 LTR ERV1 37 227 -558 266 287 24 122 chr4 119529266 119529430 -64759232 + LTR28 LTR ERV1 831 978 -42 32 26 0 0 chr4 119529480 119529519 -64759143 + AT_rich Low_complexity Low_complexity 1 39 0 510 296 23 0 chr4 119529530 119529662 -64759000 + MIR SINE MIR 36 170 -92 853 298 104 57 chr4 119529692 119530207 -64758455 + MLT1G LTR MaLR 10 547 -8 220 312 52 39 chr4 119530282 119530436 -64758226 + MIR SINE MIR 65 220 -42 7104 38 8 6 chr4 119530938 119531819 -64756843 - L1PA4 LINE L1 -1 6154 5272 12018 40 1 4 chr4 119531819 119533314 -64755348 + L1PA4 LINE L1 3753 5242 -904 456 283 9 18 chr4 119533866 119533979 -64754683 + MER5B DNA MER1_type 65 176 -2 1321 197 74 34 chr4 119534412 119534677 -64753985 + MLT2C1 LTR ERVL 1 287 -110 2197 123 0 7 chr4 119534677 119534977 -64753685 + AluSg SINE Alu 1 298 -12 1321 197 74 34 chr4 119534977 119535091 -64753571 + MLT2C1 LTR ERVL 287 395 -2 1774 134 128 18 chr4 119535123 119535451 -64753211 + THE1B LTR MaLR 1 364 0 11286 100 11 3 chr4 119535451 119537018 -64751644 + THE1B-int LTR MaLR 1 1580 0 2125 110 53 31 chr4 119537018 119537374 -64751288 + THE1B LTR MaLR 1 364 0 180 0 0 0 chr4 119537386 119537406 -64751256 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 285 341 61 15 chr4 119538146 119538278 -64750384 + MIR SINE MIR 60 197 -65 259 284 25 12 chr4 119538460 119538541 -64750121 + LTR67 LTR ERVL 114 195 -362 2208 119 3 0 chr4 119539079 119539381 -64749281 - AluSg SINE Alu -7 303 1 21 0 0 0 chr4 119540046 119540067 -64748595 + AT_rich Low_complexity Low_complexity 1 21 0 2240 82 0 0 chr4 119540611 119540890 -64747772 + AluY SINE Alu 2 280 -31 2337 59 0 53 chr4 119542078 119542398 -64746264 + AluY SINE Alu 1 303 -8 447 318 66 25 chr4 119543007 119543205 -64745457 - MIR SINE MIR -42 220 15 331 258 45 107 chr4 119543834 119544012 -64744650 + MIR3 SINE MIR 25 191 -17 339 347 23 40 chr4 119544429 119544605 -64744057 - L2 LINE L2 -258 3055 2883 461 336 151 30 chr4 119544825 119545553 -64743109 - L2 LINE L2 -927 2387 1572 308 325 6 25 chr4 119545750 119545907 -64742755 + MIR SINE MIR 105 258 -4 249 83 0 0 chr4 119547691 119547727 -64740935 + (CAAAA)n Simple_repeat Simple_repeat 4 39 0 431 291 114 59 chr4 119547822 119548128 -64740534 + L3 LINE CR1 1250 1572 -5 2245 118 0 0 chr4 119548266 119548572 -64740090 + AluSx SINE Alu 1 306 -6 711 256 88 42 chr4 119549385 119549792 -64738870 + HAL1b LINE L1 805 1230 -118 1314 121 0 0 chr4 119551736 119551918 -64736744 - L1PB4 LINE L1 -16 6140 5959 1208 243 45 42 chr4 119552268 119552602 -64736060 - MER58B DNA MER1_type -6 335 1 1956 133 0 0 chr4 119552810 119553132 -64735530 - AluSx SINE Alu 0 322 1 397 250 136 36 chr4 119554710 119554930 -64733732 + L1ME LINE L1 5548 5789 -332 547 327 16 48 chr4 119555226 119555241 -64733421 + MIR SINE MIR 7 21 -241 458 184 134 104 chr4 119555241 119555442 -64733220 + MER3 DNA MER1_type 2 208 -1 547 327 16 48 chr4 119555442 119555674 -64732988 + MIR SINE MIR 21 246 -16 28 86 0 0 chr4 119556375 119556445 -64732217 + AT_rich Low_complexity Low_complexity 1 70 0 1028 155 0 248 chr4 119556565 119556726 -64731936 - L1M3 LINE L1 -593 5578 5472 635 105 0 53 chr4 119556726 119556821 -64731841 - 5S rRNA rRNA -31 90 1 1028 155 0 248 chr4 119556821 119556997 -64731665 - L1M3 LINE L1 -699 5472 5254 2272 85 0 33 chr4 119557246 119557553 -64731109 - AluY SINE Alu -12 299 3 2388 117 8 22 chr4 119557813 119558182 -64730480 + THE1B LTR MaLR 1 364 0 11890 92 1 1 chr4 119558182 119559760 -64728902 + THE1B-int LTR MaLR 1 1578 -2 2411 122 5 22 chr4 119559762 119560132 -64728530 + THE1B LTR MaLR 1 364 0 1792 172 7 3 chr4 119561195 119561486 -64727176 - AluJo SINE Alu -20 292 1 295 341 215 4 chr4 119562348 119562594 -64726068 + L3 LINE CR1 1245 1542 -35 432 305 79 17 chr4 119563379 119563556 -64725106 - MER5A DNA MER1_type -1 188 1 227 73 73 0 chr4 119564813 119564868 -64723794 + (TA)n Simple_repeat Simple_repeat 1 59 0 1886 103 10 21 chr4 119564868 119565158 -64723504 - L1PB2 LINE L1 -3 6148 5862 268 393 41 0 chr4 119565186 119565308 -64723354 + MIR SINE MIR 9 135 -127 2162 97 10 3 chr4 119565680 119565968 -64722694 - AluSc SINE Alu -19 290 1 213 178 0 0 chr4 119566952 119566997 -64721665 + CT-rich Low_complexity Low_complexity 3 47 0 295 324 116 34 chr4 119569107 119569314 -64719348 + L3 LINE CR1 1289 1512 -65 436 273 14 49 chr4 119570633 119570776 -64717886 - L2 LINE L2 0 3313 3176 26 0 0 0 chr4 119571815 119571841 -64716821 + AT_rich Low_complexity Low_complexity 1 26 0 353 268 41 0 chr4 119571845 119571942 -64716720 - MIR SINE MIR -1 261 161 1834 195 2 8 chr4 119572696 119573096 -64715566 + L1 LINE L1 4980 5377 -769 5497 149 24 12 chr4 119573211 119574371 -64714291 + L1MA7 LINE L1 5112 6286 -5 31 58 0 0 chr4 119574646 119574698 -64713964 + AT_rich Low_complexity Low_complexity 1 52 0 1746 73 4 16 chr4 119575392 119575638 -64713024 + L1PA7 LINE L1 5911 6153 -1 636 266 52 65 chr4 119575972 119576220 -64712442 - MER102b DNA MER1_type -3 338 94 482 202 62 54 chr4 119576318 119576447 -64712215 + MIR SINE MIR 18 147 -115 357 24 0 0 chr4 119576479 119576521 -64712141 + (TTA)n Simple_repeat Simple_repeat 1 42 0 217 282 28 0 chr4 119576546 119576617 -64712045 + (CATATA)n Simple_repeat Simple_repeat 3 75 0 958 317 80 7 chr4 119576735 119577183 -64711479 - L2 LINE L2 -13 3300 2820 7126 55 0 2 chr4 119577683 119578994 -64709668 + L1PA6 LINE L1 4844 6153 -1 23 33 0 0 chr4 119579098 119579128 -64709534 + AT_rich Low_complexity Low_complexity 1 30 0 346 252 88 27 chr4 119579558 119579705 -64708957 + MER103 DNA DNA 9 164 -2 201 274 55 27 chr4 119582302 119582375 -64706287 - MIR SINE MIR -76 132 58 310 325 0 18 chr4 119582434 119582548 -64706114 - MIR3 SINE MIR -12 196 85 499 335 30 0 chr4 119582650 119582853 -64705809 + MIR SINE MIR 54 262 0 362 334 153 26 chr4 119585040 119585552 -64703110 - L2 LINE L2 0 3272 2262 22 0 0 0 chr4 119586010 119586032 -64702630 + AT_rich Low_complexity Low_complexity 1 22 0 456 61 24 37 chr4 119586248 119586330 -64702332 + (GAAA)n Simple_repeat Simple_repeat 4 84 0 21 57 0 0 chr4 119586559 119586594 -64702068 + AT_rich Low_complexity Low_complexity 1 35 0 205 245 20 39 chr4 119586708 119586810 -64701852 + GA-rich Low_complexity Low_complexity 2 101 0 1364 207 30 45 chr4 119587223 119587556 -64701106 + MLT1D LTR MaLR 7 334 -171 580 246 42 33 chr4 119587558 119587773 -64700889 - L1MEc LINE L1 -3591 2835 2619 335 64 0 0 chr4 119587773 119587820 -64700842 - MADE1 DNA Mariner 0 80 34 257 70 163 0 chr4 119587834 119587877 -64700785 + MADE1 DNA Mariner 28 77 -3 462 252 87 43 chr4 119587901 119588320 -64700342 - L1MEc LINE L1 -3806 2620 2234 1480 55 0 0 chr4 119588370 119588551 -64700111 - L1PA3 LINE L1 -3 6152 5972 1015 31 0 0 chr4 119588551 119588679 -64699983 + L1P LINE L1 5301 5428 -727 316 293 43 14 chr4 119588739 119588879 -64699783 - L1MEc LINE L1 -4387 2220 2077 278 294 0 0 chr4 119588914 119589023 -64699639 - L1MEc LINE L1 -4874 1552 1444 842 225 5 0 chr4 119589071 119589271 -64699391 - L1M4 LINE L1 -1538 4608 4408 13043 73 7 1 chr4 119589272 119591793 -64696869 - L1PA6 LINE L1 -2 6152 3617 1595 105 0 0 chr4 119591893 119592102 -64696560 - AluSg SINE Alu -101 209 1 1109 311 70 20 chr4 119593368 119593962 -64694700 - L2 LINE L2 0 3313 2686 994 236 67 115 chr4 119593980 119594293 -64694369 - LTR33 LTR ERVL -3 518 238 2263 61 0 24 chr4 119594293 119594587 -64694075 + AluY SINE Alu 1 287 -24 994 236 67 115 chr4 119594587 119594793 -64693869 - LTR33 LTR ERVL -283 238 24 2007 110 7 30 chr4 119594961 119595261 -64693401 + AluSc SINE Alu 1 293 -16 1713 301 68 44 chr4 119596119 119597526 -64691136 + L1MEc LINE L1 40 1480 -4916 560 69 101 0 chr4 119597527 119597686 -64690976 + (TA)n Simple_repeat Simple_repeat 1 175 0 * 616 64 41 47 chr4 119597651 119597822 -64690840 + (TATAA)n Simple_repeat Simple_repeat 5 174 0 301 316 38 23 chr4 119597891 119598024 -64690638 + L1MEc LINE L1 1587 1721 -4675 25 51 0 0 chr4 119598040 119598079 -64690583 + AT_rich Low_complexity Low_complexity 1 39 0 5254 245 63 57 chr4 119598079 119599210 -64689452 + L1MEc LINE L1 2173 3295 -2920 1818 177 20 0 chr4 119599210 119599515 -64689147 + AluJb SINE Alu 1 311 -1 5254 245 63 57 chr4 119599515 119600878 -64687784 + L1MEc LINE L1 3295 4646 -1569 444 327 13 13 chr4 119600893 119601043 -64687619 + L2 LINE L2 2667 2816 -498 1189 141 6 0 chr4 119601068 119601245 -64687417 - AluY SINE Alu 0 311 134 447 325 58 88 chr4 119601267 119601596 -64687066 + L2 LINE L2 2950 3268 -4 219 186 0 0 chr4 119604003 119604046 -64684616 + A-rich Low_complexity Low_complexity 1 43 0 542 253 0 0 chr4 119604479 119604574 -64684088 - MER81 DNA DNA 0 114 20 325 321 36 0 chr4 119605248 119605360 -64683302 - MIR SINE MIR -117 145 30 2174 129 0 3 chr4 119605477 119605786 -64682876 + AluSc SINE Alu 2 309 0 669 316 80 28 chr4 119606565 119607001 -64681661 - MLT1J LTR MaLR -37 474 16 383 338 71 19 chr4 119607084 119607238 -64681424 + MIR3 SINE MIR 8 169 -39 2076 120 9 12 chr4 119607656 119607892 -64680770 - L1MB3 LINE L1 -40 6143 5907 2023 163 18 3 chr4 119607892 119608235 -64680427 + MER7A DNA MER2_type 1 346 0 2076 120 9 12 chr4 119608235 119608331 -64680331 - L1MB3 LINE L1 -276 5907 5812 3054 158 14 18 chr4 119608355 119608580 -64680082 - L1MB2 LINE L1 -2 6169 5945 214 29 57 0 chr4 119608580 119608615 -64680047 + (TTTTA)n Simple_repeat Simple_repeat 2 38 0 1519 96 0 5 chr4 119608615 119608813 -64679849 - AluSg/x SINE Alu -30 280 84 3054 158 14 18 chr4 119608813 119609150 -64679512 - L1MB2 LINE L1 -224 5947 5608 701 317 53 41 chr4 119609474 119609887 -64678775 - MLT2F LTR ERVL -28 635 218 1009 279 123 54 chr4 119609888 119610712 -64677950 + L2 LINE L2 2456 3313 0 21 0 0 0 chr4 119611418 119611439 -64677223 + AT_rich Low_complexity Low_complexity 1 21 0 2037 127 3 16 chr4 119611798 119612105 -64676557 + AluSx SINE Alu 4 306 -6 3448 86 239 2 chr4 119612260 119612816 -64675846 - LTR12 LTR ERV1 0 688 1 22 0 0 0 chr4 119613063 119613085 -64675577 + AT_rich Low_complexity Low_complexity 1 22 0 339 206 27 14 chr4 119613609 119613682 -64674980 - MER96 DNA MER1_type? 0 175 102 382 181 0 14 chr4 119613835 119613907 -64674755 + MER5A DNA MER1_type 4 74 -115 1211 182 132 4 chr4 119613911 119614169 -64674493 + AluJo SINE Alu 1 291 -21 656 225 104 11 chr4 119614188 119614370 -64674292 + MER34C LTR ERV1 36 234 -351 474 221 62 71 chr4 119614419 119614685 -64673977 + LTR48 LTR ERV1 379 787 0 263 351 75 72 chr4 119615724 119616017 -64672645 - L2 LINE L2 -16 3256 2963 486 371 70 25 chr4 119616799 119617155 -64671507 - L2 LINE L2 -409 2905 2534 526 364 110 7 chr4 119617190 119617481 -64671181 - L2 LINE L2 -2845 469 149 1968 177 109 40 chr4 119617645 119618256 -64670406 + MER39 LTR ERV1 1 707 0 318 313 41 68 chr4 119618566 119618713 -64669949 - MER115 DNA AcHobo -159 534 392 243 0 0 0 chr4 119618733 119618760 -64669902 + (A)n Simple_repeat Simple_repeat 1 27 0 630 222 24 8 chr4 119618923 119619049 -64669613 - MER115 DNA AcHobo -560 133 6 1650 155 11 4 chr4 119619270 119619548 -64669114 + MER72 LTR ERV1 1 280 -442 1168 122 12 6 chr4 119619548 119619720 -64668942 + AluSx SINE Alu 1 173 -139 900 109 0 16 chr4 119619820 119619948 -64668714 + AluSx SINE Alu 168 293 -17 1954 108 44 14 chr4 119619948 119620243 -64668419 + AluSx SINE Alu 1 304 -8 2890 149 0 7 chr4 119620245 119620696 -64667966 + MER72 LTR ERV1 275 722 0 479 242 30 0 chr4 119620711 119620843 -64667819 - LTR33 LTR ERVL -58 463 328 351 143 0 0 chr4 119621953 119622009 -64666653 + MER4D LTR ERV1 1 56 -816 315 337 21 0 chr4 119622763 119622858 -64665804 + L2 LINE L2 3173 3269 -3 2034 148 0 0 chr4 119623054 119623358 -64665304 + AluSg SINE Alu 6 309 -1 24 32 0 0 chr4 119624226 119624257 -64664405 + AT_rich Low_complexity Low_complexity 1 31 0 610 292 144 28 chr4 119624258 119624799 -64663863 + L1M4 LINE L1 3354 3957 -2189 222 254 132 35 chr4 119626243 119626357 -64662305 + MIR SINE MIR 57 181 -81 1620 156 151 42 chr4 119626476 119626900 -64661762 - LTR22B LTR ERVK -18 474 5 67 69 0 0 chr4 119626965 119627095 -64661567 + AT_rich Low_complexity Low_complexity 1 130 0 510 342 25 6 chr4 119627228 119627389 -64661273 + MIR3 SINE MIR 21 184 -24 8209 124 9 15 chr4 119627596 119627621 -64661041 + HSMAR2 DNA Mariner 2 26 -1276 2441 73 0 0 chr4 119627621 119627922 -64660740 + AluY SINE Alu 1 301 -10 8209 124 9 15 chr4 119627922 119629181 -64659481 + HSMAR2 DNA Mariner 26 1278 -24 252 89 0 18 chr4 119629284 119629340 -64659322 + HSMAR2 DNA Mariner 1247 1301 -1 1469 266 73 14 chr4 119629685 119630177 -64658485 + L2 LINE L2 1508 2028 -1286 1066 328 63 46 chr4 119630235 119631928 -64656734 - HERV16 LTR ERVL -2639 2357 603 250 358 28 0 chr4 119631964 119632073 -64656589 - HERV16 LTR ERVL -4884 112 1 628 285 97 22 chr4 119632091 119632410 -64656252 - LTR16C LTR ERVL -32 459 117 24 0 0 0 chr4 119632930 119632954 -64655708 + AT_rich Low_complexity Low_complexity 1 24 0 186 256 0 0 chr4 119633067 119633106 -64655556 + MER5A DNA MER1_type 151 189 0 366 263 0 50 chr4 119633877 119633976 -64654686 - L2 LINE L2 -1 3312 3219 575 271 26 7 chr4 119634022 119634173 -64654489 + MER63A DNA MER1_type 57 210 0 3841 89 28 0 chr4 119634645 119635184 -64653478 + MER41A LTR ERV1 1 554 0 318 158 83 0 chr4 119635545 119635665 -64652997 + (TA)n Simple_repeat Simple_repeat 1 130 0 3767 164 78 38 chr4 119635670 119636517 -64652145 + MER4D LTR ERV1 1 881 -22 348 127 482 27 chr4 119636620 119636730 -64651932 - MER4A LTR ERV1 0 664 451 1654 196 81 25 chr4 119636730 119637163 -64651499 - LTR2B LTR ERV1 0 490 34 36064 124 41 44 chr4 119637184 119644091 -64644571 - Harlequin LTR ERV1 0 6896 6 1530 224 57 39 chr4 119644096 119644326 -64644336 - LTR2 LTR ERV1 0 449 206 201 74 0 0 chr4 119644326 119644353 -64644309 + (CAGAA)n Simple_repeat Simple_repeat 2 28 0 1530 224 57 39 chr4 119644353 119644563 -64644099 - LTR2 LTR ERV1 -243 206 1 568 158 5 127 chr4 119644563 119644765 -64643897 - MER4A LTR ERV1 -155 509 275 291 44 22 22 chr4 119644782 119644827 -64643835 - MER4A LTR ERV1 -566 98 54 5987 118 55 23 chr4 119644861 119645148 -64643514 - MER4A-int LTR ERV1 -2 6596 6320 2314 91 0 10 chr4 119645148 119645445 -64643217 + AluY SINE Alu 1 294 -17 5987 118 55 23 chr4 119645445 119646240 -64642422 - MER4A-int LTR ERV1 -278 6320 5479 1995 142 0 19 chr4 119646250 119646566 -64642096 + AluSx SINE Alu 1 310 -2 748 104 123 26 chr4 119646566 119646720 -64641942 - MER4A-int LTR ERV1 -1320 4626 4458 22 0 0 0 chr4 119647883 119647905 -64640757 + AT_rich Low_complexity Low_complexity 1 22 0 266 207 52 0 chr4 119648002 119648060 -64640602 + LTR10A LTR ERV1 1 61 -548 1403 174 65 42 chr4 119648111 119648467 -64640195 + LTR10A LTR ERV1 185 548 -61 180 121 69 0 chr4 119648813 119648871 -64639791 + (TTAAA)n Simple_repeat Simple_repeat 4 65 0 234 279 86 30 chr4 119648940 119649302 -64639360 - L1ME LINE L1 -201 5920 5539 592 271 124 66 chr4 119649683 119650167 -64638495 - LTR68 LTR ERV1 0 740 229 24 53 0 0 chr4 119650491 119650529 -64638133 + AT_rich Low_complexity Low_complexity 1 38 0 477 270 180 8 chr4 119650533 119650800 -64637862 - L1ME LINE L1 -1446 4700 4388 1876 139 3 20 chr4 119650897 119651191 -64637471 - AluJb SINE Alu -23 289 1 2660 199 40 62 chr4 119651453 119652162 -64636500 + LTR8A LTR ERV1 35 727 0 26 45 0 45 chr4 119652279 119652345 -64636317 + AT_rich Low_complexity Low_complexity 1 63 0 10173 206 18 38 chr4 119652375 119655136 -64633526 - L1PB1 LINE L1 -1 6866 4051 1898 173 0 17 chr4 119655136 119655459 -64633203 - AluSx SINE Alu 0 312 1 10173 206 18 38 chr4 119655459 119657550 -64631112 - L1PB1 LINE L1 -2816 4051 1920 1829 164 42 33 chr4 119657550 119657909 -64630753 + THE1B LTR MaLR 1 362 -2 9816 115 42 44 chr4 119657912 119659186 -64629476 + THE1B-int LTR MaLR 2 1273 -307 2038 115 14 20 chr4 119659186 119659482 -64629180 + AluSg SINE Alu 1 294 -16 9816 115 42 44 chr4 119659482 119659790 -64628872 + THE1B-int LTR MaLR 1273 1580 0 2009 138 48 34 chr4 119659793 119660149 -64628513 + THE1B LTR MaLR 4 364 0 10173 206 18 38 chr4 119660149 119660209 -64628453 - L1PB1 LINE L1 -4794 2073 2013 2302 132 0 0 chr4 119660543 119660853 -64627809 + AluSg SINE Alu 1 310 0 33808 100 12 10 chr4 119660916 119667060 -64621602 - L1PA6 LINE L1 0 6154 11 6915 115 136 7 chr4 119667071 119668307 -64620355 - L1PB1 LINE L1 -4834 2029 634 1165 132 5 0 chr4 119668307 119668504 -64620158 - L1PB1 LINE L1 -6663 200 3 182 316 32 32 chr4 119668734 119668829 -64619833 + MIR SINE MIR 155 249 -13 333 47 0 0 chr4 119668844 119668887 -64619775 + (TG)n Simple_repeat Simple_repeat 2 44 0 22 35 0 0 chr4 119669221 119669250 -64619412 + AT_rich Low_complexity Low_complexity 1 29 0 295 105 35 0 chr4 119669307 119669364 -64619298 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 205 163 0 41 chr4 119669907 119669956 -64618706 + T-rich Low_complexity Low_complexity 6 52 0 780 304 131 37 chr4 119671209 119671978 -64616684 + L2 LINE L2 2215 3057 -215 2359 155 52 9 chr4 119672095 119672539 -64616123 - L1PB4 LINE L1 -2 6154 5692 2296 243 37 43 chr4 119672588 119673292 -64615370 - MER21B LTR ERV1 -124 739 40 446 246 82 67 chr4 119673335 119673530 -64615132 + L2 LINE L2 3114 3311 -2 2142 116 7 7 chr4 119673602 119673905 -64614757 - AluSx SINE Alu -8 304 2 765 180 8 0 chr4 119673907 119674035 -64614627 - FLAM_C SINE Alu -9 134 6 374 272 8 32 chr4 119674092 119674217 -64614445 - MIR SINE MIR -60 202 81 390 357 71 10 chr4 119674268 119674464 -64614198 - L2 LINE L2 -193 3079 2872 1010 124 4 158 chr4 119675383 119675656 -64613006 + LTR12 LTR ERV1 1 231 -483 380 133 118 52 chr4 119675663 119675798 -64612864 + LTR12 LTR ERV1 142 285 -429 310 191 0 0 chr4 119675799 119675867 -64612795 + LTR30 LTR ERV1 553 620 -102 793 146 24 0 chr4 119675867 119675990 -64612672 + LTR12 LTR ERV1 355 480 -234 1610 240 130 14 chr4 119676083 119677154 -64611508 + L1MC4 LINE L1 6558 7900 -142 938 262 13 35 chr4 119677507 119677824 -64610838 - MER90 LTR ERV1 -59 516 207 497 286 45 0 chr4 119678136 119678290 -64610372 - MIR SINE MIR -44 218 58 288 0 0 0 chr4 119678789 119678821 -64609841 + (TG)n Simple_repeat Simple_repeat 2 33 0 3035 238 48 7 chr4 119678833 119679652 -64609010 + MER63C DNA MER1_type 78 929 -1 1686 179 75 27 chr4 119679652 119680191 -64608471 + MLT2A2 LTR ERVL 1 554 0 189 333 14 28 chr4 119680665 119680737 -64607925 + L2 LINE L2 3202 3272 0 241 322 41 70 chr4 119681183 119681354 -64607308 + LTR16C LTR ERVL 170 335 -156 21 0 0 0 chr4 119681370 119681391 -64607271 + AT_rich Low_complexity Low_complexity 1 21 0 259 252 18 126 chr4 119683629 119683740 -64604922 - L2 LINE L2 0 3272 3174 264 318 27 18 chr4 119683857 119683967 -64604695 - MIR SINE MIR -1 261 151 207 69 0 0 chr4 119684523 119684552 -64604110 + (TTGG)n Simple_repeat Simple_repeat 4 32 0 207 0 0 0 chr4 119684554 119684577 -64604085 + (TTG)n Simple_repeat Simple_repeat 2 24 0 198 0 0 0 chr4 119685202 119685224 -64603438 + (T)n Simple_repeat Simple_repeat 1 22 0 207 247 82 71 chr4 119685384 119685469 -64603193 - MIR SINE MIR -152 110 25 858 203 18 0 chr4 119685605 119685768 -64602894 - MSTD LTR MaLR -6 390 225 1948 95 4 8 chr4 119686087 119686349 -64602313 + AluSc SINE Alu 30 290 -19 22 0 0 0 chr4 119686350 119686372 -64602290 + AT_rich Low_complexity Low_complexity 1 22 0 280 219 14 14 chr4 119686473 119686546 -64602116 - MLT1K LTR MaLR -24 564 492 368 245 29 10 chr4 119686988 119687090 -64601572 - MER63A DNA MER1_type 0 104 1 640 307 15 10 chr4 119687995 119688200 -64600462 - MIR SINE MIR -10 252 47 458 335 62 22 chr4 119688560 119688739 -64599923 + MIR3 SINE MIR 17 202 -6 473 155 0 0 chr4 119688979 119689050 -64599612 - AluJb SINE Alu -195 117 47 * 505 167 0 0 chr4 119689049 119689127 -64599535 - AluJ/FLAM SINE Alu -232 80 3 277 263 32 32 chr4 119689156 119689251 -64599411 - LTR33 LTR ERVL 0 521 427 1454 207 10 27 chr4 119689341 119689641 -64599021 - AluJo SINE Alu -7 295 1 470 232 16 16 chr4 119689667 119689792 -64598870 - LTR33 LTR ERVL 0 521 397 281 286 51 10 chr4 119689809 119689907 -64598755 - LTR33 LTR ERVL -414 107 6 313 306 36 0 chr4 119692474 119692585 -64596077 + L2 LINE L2 3001 3115 -198 182 283 38 0 chr4 119692606 119692659 -64596003 + MIR SINE MIR 12 66 -196 1831 126 10 50 chr4 119693277 119693579 -64595083 + AluSx SINE Alu 1 290 -22 4820 210 278 20 chr4 119694016 119695631 -64593031 + L1M3e LINE L1 1 2032 -4998 272 224 0 0 chr4 119695734 119695783 -64592879 - L2 LINE L2 0 3313 3265 216 0 0 0 chr4 119696012 119696036 -64592626 + (CA)n Simple_repeat Simple_repeat 1 24 0 637 317 22 9 chr4 119696673 119696903 -64591759 + L1M3a LINE L1 179 411 -5720 610 254 56 15 chr4 119696904 119697101 -64591561 + L1M3a LINE L1 1412 1616 -4525 2410 260 40 34 chr4 119697173 119697627 -64591035 + L1M4 LINE L1 812 1262 -5122 2444 55 13 23 chr4 119697627 119697935 -64590727 + AluY SINE Alu 5 309 -2 2410 260 40 34 chr4 119697935 119699203 -64589459 + L1M4 LINE L1 1262 2408 -3976 3568 251 29 12 chr4 119699204 119700309 -64588353 + L1M4 LINE L1 2530 3653 -2729 210 37 0 0 chr4 119700324 119700351 -64588311 + (CA)n Simple_repeat Simple_repeat 1 27 0 6698 130 55 4 chr4 119700818 119701990 -64586672 - Tigger3b DNA MER2_type 0 1231 1 340 380 36 0 chr4 119702064 119702201 -64586461 + L2 LINE L2 3123 3264 -8 294 335 109 22 chr4 119703274 119703389 -64585273 - L2 LINE L2 -40 3232 3128 2173 133 36 30 chr4 119703389 119703751 -64584911 - THE1B LTR MaLR 0 364 1 294 335 109 22 chr4 119703751 119703865 -64584797 - L2 LINE L2 -144 3128 2983 2210 180 156 78 chr4 119703926 119704242 -64584420 - L1MD3 LINE L1 0 7995 7705 1623 197 98 9 chr4 119704242 119704577 -64584085 - MLT1A1 LTR MaLR 0 365 1 2210 180 156 78 chr4 119704577 119704698 -64583964 - L1MD3 LINE L1 -290 7705 7595 2108 116 54 25 chr4 119704698 119705052 -64583610 - THE1B LTR MaLR 0 364 1 2210 180 156 78 chr4 119705052 119705142 -64583520 - L1MD3 LINE L1 -400 7595 7513 472 146 29 48 chr4 119705142 119705245 -64583417 - MLT1F1 LTR MaLR -432 135 35 2210 180 156 78 chr4 119705245 119705619 -64583043 - L1MD3 LINE L1 -482 7513 6704 324 303 86 28 chr4 119705650 119705935 -64582727 + HAL1 LINE L1 107 374 -2133 2314 123 43 6 chr4 119705935 119706284 -64582378 + THE1B LTR MaLR 3 364 0 324 303 86 28 chr4 119706284 119706572 -64582090 + HAL1 LINE L1 374 793 -1714 202 648 17 6 chr4 119706640 119706816 -64581846 + (TA)n Simple_repeat Simple_repeat 2 179 0 714 289 99 3 chr4 119706970 119707274 -64581388 - L1ME3A LINE L1 -214 5956 5624 1533 251 62 10 chr4 119707276 119707773 -64580889 + L1M4 LINE L1 4807 5329 -1053 7941 228 33 32 chr4 119707795 119709675 -64578987 - L1MA9 LINE L1 -25 6989 5099 2183 118 3 16 chr4 119709675 119709990 -64578672 - AluSx SINE Alu -1 311 1 7941 228 33 32 chr4 119709990 119711192 -64577470 - L1MA9 LINE L1 -1915 5099 3901 267 276 0 38 chr4 119711217 119711322 -64577340 + L1M1 LINE L1 3083 3183 -4382 295 152 61 0 chr4 119711425 119711491 -64577171 - L1MA9 LINE L1 -4351 2498 2429 7279 48 11 1 chr4 119711491 119714170 -64574492 + L1PA4 LINE L1 3399 6154 -1 214 306 118 35 chr4 119715346 119715431 -64573231 + L2 LINE L2 3208 3299 -14 956 233 91 28 chr4 119721442 119721716 -64566946 + MLT1F LTR MaLR 3 339 -256 543 133 0 0 chr4 119721755 119721838 -64566824 - MER51-int LTR ERV1 -264 7552 7470 640 184 44 22 chr4 119721838 119721974 -64566688 - LTR54B LTR ERV1 -357 141 3 1693 140 11 0 chr4 119721987 119722252 -64566410 + MER51B-int LTR ERV1 7548 7815 -1 1706 104 104 4 chr4 119722254 119722522 -64566140 + MER51B LTR ERV1 1 295 -82 817 192 26 47 chr4 119722539 119722732 -64565930 + MLT1F LTR MaLR 379 567 0 2172 89 15 6 chr4 119724743 119725083 -64563579 + L1MDa LINE L1 2479 2830 -3710 297 289 84 66 chr4 119725469 119725635 -64563027 - L3b LINE CR1 -4 1579 1411 194 313 31 16 chr4 119726099 119726163 -64562499 + MIR SINE MIR 41 105 -103 328 125 139 0 chr4 119726163 119726235 -64562427 + L1MA9 LINE L1 6230 6311 -1 256 222 0 0 chr4 119726246 119726300 -64562362 + MIR SINE MIR 101 154 -108 219 167 0 0 chr4 119727320 119727362 -64561300 + CT-rich Low_complexity Low_complexity 2 43 0 26 50 0 0 chr4 119727763 119727803 -64560859 + AT_rich Low_complexity Low_complexity 1 40 0 569 276 35 18 chr4 119727964 119728134 -64560528 - MIR SINE MIR -3 259 87 381 299 199 5 chr4 119729416 119729617 -64559045 - MIR SINE MIR 0 262 23 189 211 79 0 chr4 119730630 119730668 -64557994 - L2 LINE L2 -15 3257 3217 185 295 16 16 chr4 119730721 119730782 -64557880 + L2 LINE L2 3210 3270 -2 643 213 16 16 chr4 119731791 119731913 -64556749 - FLAM_A SINE Alu -10 123 2 21 0 0 0 chr4 119733184 119733205 -64555457 + AT_rich Low_complexity Low_complexity 1 21 0 342 67 0 0 chr4 119735273 119735318 -64553344 + (TG)n Simple_repeat Simple_repeat 2 46 0 207 100 0 0 chr4 119735646 119735676 -64552986 + (CAT)n Simple_repeat Simple_repeat 2 31 0 198 237 0 102 chr4 119735691 119735750 -64552912 + L2 LINE L2 3246 3298 -15 24 32 0 0 chr4 119738387 119738418 -64550244 + AT_rich Low_complexity Low_complexity 1 31 0 287 288 31 75 chr4 119741003 119741163 -64547499 + MIR SINE MIR 103 255 -7 816 250 122 31 chr4 119742122 119742554 -64546108 - L2 LINE L2 0 3313 2505 445 321 30 124 chr4 119742598 119743099 -64545563 + L2 LINE L2 2807 3260 -12 517 333 97 54 chr4 119743733 119744178 -64544484 + L2 LINE L2 2809 3272 0 340 311 46 100 chr4 119744201 119744442 -64544220 - L2 LINE L2 -45 3227 3000 457 360 101 14 chr4 119744538 119744816 -64543846 - L2 LINE L2 -454 2860 2559 197 293 0 17 chr4 119744890 119744948 -64543714 + L2 LINE L2 3254 3310 -3 197 318 165 27 chr4 119745912 119746173 -64542489 + L2 LINE L2 2550 2846 -468 878 209 73 0 chr4 119746174 119746351 -64542311 + MER20 DNA MER1_type 30 219 0 302 234 113 28 chr4 119746353 119746494 -64542168 + L2 LINE L2 2804 2956 -316 238 291 0 18 chr4 119746707 119746762 -64541900 + L2 LINE L2 3203 3256 -16 234 364 30 89 chr4 119747072 119747341 -64541321 - L2 LINE L2 -12 3260 3008 510 332 48 55 chr4 119749320 119749760 -64538902 + L1MEd LINE L1 8 444 -5675 204 40 0 0 chr4 119749935 119749960 -64538702 + (TC)n Simple_repeat Simple_repeat 2 26 0 631 220 12 0 chr4 119749960 119750128 -64538534 + (TA)n Simple_repeat Simple_repeat 2 171 0 188 261 0 0 chr4 119750135 119750181 -64538481 - MIR SINE MIR -61 201 156 201 195 0 0 chr4 119750397 119750438 -64538224 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 550 329 119 7 chr4 119751290 119751567 -64537095 - L3 LINE CR1 -219 1358 1051 1904 187 26 88 chr4 119753884 119754420 -64534242 - MLT1D LTR MaLR -2 503 1 1368 249 45 9 chr4 119754422 119754756 -64533906 - L2 LINE L2 -597 2717 2372 1048 266 43 7 chr4 119755029 119755307 -64533355 - L2 LINE L2 -989 2325 2038 258 164 33 16 chr4 119755678 119755739 -64532923 - MARNA DNA Mariner -197 389 328 391 329 81 3 chr4 119755789 119756072 -64532590 + L1ME4a LINE L1 5548 5852 -269 403 256 226 0 chr4 119756075 119756274 -64532388 + L1ME4a LINE L1 5874 6117 -4 381 250 29 0 chr4 119756379 119756483 -64532179 + MARNA DNA Mariner 430 536 -50 502 259 12 36 chr4 119757522 119757688 -64530974 - MIR SINE MIR 0 262 101 385 301 97 0 chr4 119758248 119758361 -64530301 + L2 LINE L2 3149 3272 0 459 0 0 0 chr4 119759025 119759076 -64529586 + (CA)n Simple_repeat Simple_repeat 2 52 0 204 97 0 0 chr4 119759076 119759107 -64529555 + (GA)n Simple_repeat Simple_repeat 1 31 0 1179 216 0 0 chr4 119759781 119759994 -64528668 - AluJb SINE Alu -17 295 83 326 333 23 30 chr4 119759999 119760131 -64528531 - MIR SINE MIR -62 146 16 218 343 102 19 chr4 119760500 119760608 -64528054 - L2 LINE L2 0 3272 3156 388 236 9 36 chr4 119762364 119762474 -64526188 - MIR SINE MIR 0 262 156 218 54 0 27 chr4 119763120 119763157 -64525505 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 592 253 61 58 chr4 119763354 119763648 -64525014 - MLT1G1 LTR MaLR -288 261 1 334 191 0 0 chr4 119763648 119763711 -64524951 - L1MC5 LINE L1 -518 7443 7381 513 71 0 0 chr4 119763713 119763783 -64524879 + (TA)n Simple_repeat Simple_repeat 2 71 0 1540 189 14 7 chr4 119763783 119764064 -64524598 - AluSg SINE Alu -27 283 1 609 41 0 103 chr4 119814076 119814100 -64474562 - L1P4 LINE L1 -663 5505 5480 2011 116 0 35 chr4 119814100 119814411 -64474251 - AluSg1 SINE Alu -9 300 1 609 41 0 103 chr4 119814411 119814483 -64474179 - L1P4 LINE L1 -688 5480 5419 900 281 29 7 chr4 119814483 119814764 -64473898 + L1M4 LINE L1 3614 3900 -2246 440 261 75 6 chr4 119814765 119814926 -64473736 + L1M4 LINE L1 3926 4097 -2049 1869 99 53 81 chr4 119814927 119815250 -64473412 + THE1B LTR MaLR 3 316 -48 25 51 0 0 chr4 119816802 119816841 -64471821 + AT_rich Low_complexity Low_complexity 1 39 0 1934 134 0 3 chr4 119816950 119817266 -64471396 + AluSx SINE Alu 1 315 0 387 281 73 53 chr4 119817476 119817871 -64470791 + HAL1 LINE L1 821 1223 -1284 367 309 0 0 chr4 119818522 119818619 -64470043 - MIR SINE MIR -1 261 165 424 260 41 47 chr4 119818715 119818884 -64469778 - MER5B DNA MER1_type -7 171 4 250 265 145 0 chr4 119818894 119818977 -64469685 + MIR SINE MIR 59 153 -109 223 347 41 0 chr4 119820133 119820231 -64468431 + MIR SINE MIR 20 121 -141 243 322 105 14 chr4 119820358 119820501 -64468161 - L3 LINE CR1 -774 803 648 318 253 32 11 chr4 119820565 119820660 -64468002 - MLT1L LTR MaLR 0 615 519 692 158 35 0 chr4 119822146 119822260 -64466402 - MLT1C LTR MaLR -349 118 1 427 314 54 27 chr4 119823057 119823353 -64465309 + HERV16 LTR ERVL 37 340 -4656 695 270 179 39 chr4 119825121 119825578 -64463084 - L2 LINE L2 -596 2718 2109 1826 121 0 57 chr4 119825578 119825938 -64462724 + AluY SINE Alu 1 343 0 695 270 179 39 chr4 119825938 119825988 -64462674 - L2 LINE L2 -1205 2109 2067 846 163 0 7 chr4 119826293 119826428 -64462234 + AluJo SINE Alu 1 134 -178 440 254 9 18 chr4 119826542 119826656 -64462006 + MLT1B LTR MaLR 272 384 -6 267 247 210 25 chr4 119826661 119826823 -64461839 - L2 LINE L2 -994 2320 2129 892 290 120 27 chr4 119826831 119827431 -64461231 - L2 LINE L2 -1357 1957 1302 423 327 65 0 chr4 119827865 119828082 -64460580 - L1MEc LINE L1 -4645 1751 1521 195 42 0 0 chr4 119828170 119828194 -64460468 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 269 333 65 28 chr4 119828425 119828533 -64460129 - L2 LINE L2 -27 3245 3134 1826 81 0 16 chr4 119828729 119828977 -64459685 - THE1-int LTR MaLR -10 1570 1327 25 31 0 0 chr4 119829460 119829492 -64459170 + AT_rich Low_complexity Low_complexity 1 32 0 834 293 83 11 chr4 119829705 119830128 -64458534 + MER110A LTR ERV1 40 475 -2 572 274 113 73 chr4 119830662 119831238 -64457424 + L3 LINE CR1 970 1568 -9 23 0 0 0 chr4 119831933 119831956 -64456706 + AT_rich Low_complexity Low_complexity 1 23 0 3002 220 35 77 chr4 119832080 119832978 -64455684 + L1MD2 LINE L1 5476 7804 -4 23 33 0 0 chr4 119832973 119833003 -64455659 + AT_rich Low_complexity Low_complexity 1 30 0 * 242 172 0 35 chr4 119832995 119833053 -64455609 + L1MD2 LINE L1 6294 6349 -10 332 241 17 43 chr4 119833054 119833170 -64455492 + L1MEc LINE L1 2257 2369 -4027 319 295 54 0 chr4 119833475 119833587 -64455075 - L1MEc LINE L1 -5926 279 162 624 240 37 22 chr4 119836048 119836291 -64452371 - MER57B LTR ERV1 -174 260 19 2419 95 0 0 chr4 119836446 119836751 -64451911 - AluSq SINE Alu -8 305 1 25 0 0 0 chr4 119836806 119836831 -64451831 + AT_rich Low_complexity Low_complexity 1 25 0 1476 224 147 57 chr4 119837141 119837774 -64450888 + LTR1B LTR ERV1 137 826 0 833 194 21 38 chr4 119837780 119837966 -64450696 - MER20 DNA MER1_type -36 183 1 4054 155 73 35 chr4 119838739 119839624 -64449038 - L1MC3 LINE L1 0 7785 6860 225 0 0 0 chr4 119839624 119839649 -64449013 + (TG)n Simple_repeat Simple_repeat 2 26 0 4054 155 73 35 chr4 119839649 119839727 -64448935 - L1MC3 LINE L1 -925 6860 6786 9487 39 0 2 chr4 119841206 119842419 -64446243 - L1P LINE L1 -1250 4896 3686 1387 210 9 54 chr4 119842527 119842860 -64445802 - MLT1A1 LTR MaLR -45 320 3 4380 222 24 51 chr4 119842873 119844020 -64444642 - MLT1A1-int LTR MaLR -6 1729 614 22 35 0 0 chr4 119846340 119846369 -64442293 + AT_rich Low_complexity Low_complexity 1 29 0 344 286 94 54 chr4 119847248 119847451 -64441211 - MIR SINE MIR -51 211 1 384 22 0 0 chr4 119848072 119848117 -64440545 + (CA)n Simple_repeat Simple_repeat 2 46 0 594 228 16 16 chr4 119848161 119848284 -64440378 + FLAM_A SINE Alu 1 123 -10 2333 94 26 9 chr4 119848290 119848630 -64440032 + L1PA10 LINE L1 5820 6165 -3 195 42 0 0 chr4 119850234 119850258 -64438404 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 28036 108 20 28 chr4 119850258 119856749 -64431913 - L1PA8 LINE L1 -24 6463 6 241 120 0 213 chr4 119856875 119856950 -64431712 - L2 LINE L2 0 3272 3214 210 326 52 62 chr4 119857021 119857214 -64431448 - L2 LINE L2 -428 2886 2696 799 232 53 57 chr4 119858470 119858584 -64430078 - MIR SINE MIR 0 262 149 2373 82 0 7 chr4 119858584 119858876 -64429786 - AluSc SINE Alu -19 290 1 799 232 53 57 chr4 119858876 119859024 -64429638 - MIR SINE MIR -113 149 1 245 296 23 57 chr4 119859156 119859244 -64429418 - L2 LINE L2 -22 3291 3207 * 253 309 144 66 chr4 119859235 119859491 -64429171 + L2 LINE L2 2996 3271 -1 209 308 106 10 chr4 119859490 119859594 -64429068 - MIR SINE MIR -71 137 24 * 300 348 80 0 chr4 119859845 119859957 -64428705 - MIR SINE MIR -136 126 6 511 269 187 12 chr4 119859972 119860143 -64428519 + MIR SINE MIR 51 251 -11 208 225 0 0 chr4 119860110 119860150 -64428512 + L2 LINE L2 3264 3303 -10 * 2642 176 50 12 chr4 119860542 119861043 -64427619 + MLT2B1 LTR ERVL 1 520 0 453 305 153 6 chr4 119861100 119861277 -64427385 + MIR SINE MIR 53 255 -7 248 230 0 14 chr4 119861347 119861421 -64427241 + GA-rich Low_complexity Low_complexity 2 74 0 478 286 101 28 chr4 119862766 119862944 -64425718 - MIR3 SINE MIR -1 207 17 299 275 261 24 chr4 119867027 119867234 -64421428 - MIR3 SINE MIR 0 262 7 2220 123 0 0 chr4 119867289 119867591 -64421071 + AluSx SINE Alu 1 302 -10 456 35 0 0 chr4 119867625 119867683 -64420979 + (TG)n Simple_repeat Simple_repeat 2 59 0 2199 124 0 3 chr4 119869217 119869524 -64419138 + AluSx SINE Alu 1 306 -6 204 40 0 0 chr4 119869524 119869549 -64419113 + (GGAGA)n Simple_repeat Simple_repeat 4 28 0 2156 102 36 10 chr4 119871591 119871895 -64416767 - AluSx SINE Alu 0 312 1 2427 78 7 3 chr4 119872036 119872343 -64416319 + AluSg SINE Alu 1 308 -2 980 85 165 0 chr4 119873108 119873284 -64415378 + L1MA3 LINE L1 6100 6304 -1 23 0 0 0 chr4 119873403 119873426 -64415236 + AT_rich Low_complexity Low_complexity 1 23 0 326 208 14 0 chr4 119873486 119873558 -64415104 + Charlie1 DNA MER1_type 46 118 -2643 1154 137 0 6 chr4 119873562 119873730 -64414932 + AluJo SINE Alu 127 293 -19 284 225 12 12 chr4 119873751 119873831 -64414831 + Charlie1 DNA MER1_type 2184 2263 -498 1111 37 0 0 chr4 119873837 119873972 -64414690 - L1PA4 LINE L1 -3 6152 6018 256 337 127 31 chr4 119874636 119875125 -64413537 + L2 LINE L2 1867 2402 -912 2166 107 10 0 chr4 119876478 119876769 -64411893 + AluSx SINE Alu 1 294 -18 437 299 26 94 chr4 119878130 119878364 -64410298 + MIR SINE MIR 19 236 -26 199 258 65 0 chr4 119878435 119878497 -64410165 + MIR SINE MIR 122 187 -75 482 230 50 105 chr4 119878795 119878928 -64409734 + MER5A DNA MER1_type 1 121 -68 2307 82 0 7 chr4 119878928 119879220 -64409442 - AluY SINE Alu -21 290 1 482 230 50 105 chr4 119879220 119879286 -64409376 + MER5A DNA MER1_type 121 189 0 230 286 0 0 chr4 119879876 119879932 -64408730 + L3 LINE CR1 327 382 -1195 237 241 11 69 chr4 119880536 119880623 -64408039 + L3 LINE CR1 631 712 -865 666 340 100 3 chr4 119880623 119880932 -64407730 + L3 LINE CR1 1232 1570 -7 1754 180 21 0 chr4 119882306 119882590 -64406072 + AluJo SINE Alu 7 296 -16 2174 94 31 0 chr4 119882592 119882880 -64405782 + AluSp SINE Alu 1 297 -16 180 111 0 0 chr4 119883238 119883265 -64405397 + (A)n Simple_repeat Simple_repeat 1 27 0 399 328 25 39 chr4 119883618 119883819 -64404843 - MIR3 SINE MIR -3 205 8 949 216 33 7 chr4 119884308 119884581 -64404081 + L1MD2 LINE L1 4944 5223 -923 * 5058 149 44 38 chr4 119884577 119885083 -64403579 + L1MA9 LINE L1 4942 5444 -868 2193 112 7 0 chr4 119885083 119885388 -64403274 + AluSx SINE Alu 1 307 -5 5058 149 44 38 chr4 119885388 119886252 -64402410 + L1MA9 LINE L1 5444 6312 0 4801 166 21 48 chr4 119886247 119887383 -64401279 + L1MA9 LINE L1 5188 6312 0 * 516 168 9 0 chr4 119887379 119887486 -64401176 + L1MD2 LINE L1 5197 5304 -842 * 578 204 29 6 chr4 119887490 119887662 -64401000 + GA-rich Low_complexity Low_complexity 1 176 0 260 62 0 0 chr4 119887662 119887694 -64400968 + (GGGAA)n Simple_repeat Simple_repeat 5 36 0 3782 179 68 61 chr4 119887695 119888106 -64400556 + L1MD2 LINE L1 5307 5714 -645 2034 148 13 0 chr4 119888106 119888411 -64400251 - AluJb SINE Alu -3 309 1 3782 179 68 61 chr4 119888411 119889043 -64399619 + L1MD2 LINE L1 5714 6357 -2 357 282 86 0 chr4 119889465 119889582 -64399080 + MIR3 SINE MIR 75 201 -7 476 280 86 11 chr4 119890342 119890517 -64398145 - MIR3 SINE MIR -6 202 15 182 296 99 14 chr4 119890565 119890636 -64398026 - MER5A DNA MER1_type -107 82 6 2037 145 65 51 chr4 119890777 119891205 -64397457 + Tigger2a DNA MER2_type 1 434 0 631 271 20 0 chr4 119891220 119891371 -64397291 - MIR SINE MIR -30 232 79 566 236 71 0 chr4 119891962 119892102 -64396560 + MIR SINE MIR 69 218 -44 587 262 99 16 chr4 119892681 119892872 -64395790 + MIR SINE MIR 7 213 -49 514 252 36 126 chr4 119893113 119893391 -64395271 + MIR SINE MIR 2 254 -8 310 297 11 11 chr4 119894770 119894789 -64393873 + MIR SINE MIR 17 35 -227 2325 73 0 7 chr4 119894789 119895078 -64393584 + AluSq SINE Alu 2 288 -25 310 297 11 11 chr4 119895078 119895149 -64393513 + MIR SINE MIR 34 107 -155 539 320 70 16 chr4 119895151 119895395 -64393267 - MIR SINE MIR -1 261 5 220 286 16 79 chr4 119895414 119895540 -64393122 + MIR SINE MIR 124 241 -21 280 287 118 15 chr4 119896066 119896202 -64392460 + MIR SINE MIR 1 150 -112 180 0 0 0 chr4 119897080 119897100 -64391562 + (A)n Simple_repeat Simple_repeat 1 20 0 1821 143 8 0 chr4 119897355 119897621 -64391041 - AluSx SINE Alu 0 312 45 623 323 58 63 chr4 119897731 119898146 -64390516 + L2 LINE L2 2901 3313 0 263 254 237 17 chr4 119898216 119898334 -64390328 + L2 LINE L2 3162 3305 -8 195 204 0 0 chr4 119898334 119898388 -64390274 + (AATTG)n Simple_repeat Simple_repeat 4 57 0 236 259 56 56 chr4 119901048 119901191 -64387471 - L3b LINE CR1 -82 1501 1359 1978 56 0 0 chr4 119902064 119902315 -64386347 + L1PA4 LINE L1 5905 6155 0 669 232 97 5 chr4 119904306 119904491 -64384171 - MIR SINE MIR -58 204 3 906 199 0 0 chr4 119906030 119906191 -64382471 - FAM SINE Alu -10 165 5 814 329 138 14 chr4 119906581 119907347 -64381315 - L2 LINE L2 0 3313 2454 586 284 34 17 chr4 119910224 119910400 -64378262 + MIR3 SINE MIR 29 207 -1 757 221 49 5 chr4 119912250 119912454 -64376208 - L1MB7 LINE L1 -1 6183 5971 245 296 25 12 chr4 119914148 119914229 -64374433 - MIR SINE MIR -1 261 180 2121 119 24 7 chr4 119915281 119915574 -64373088 - AluSx SINE Alu -14 298 1 208 207 17 0 chr4 119916711 119916827 -64371835 + (TA)n Simple_repeat Simple_repeat 2 119 0 247 212 65 12 chr4 119917807 119917977 -64370685 + (TA)n Simple_repeat Simple_repeat 2 180 0 34 24 0 0 chr4 119917977 119918018 -64370644 + AT_rich Low_complexity Low_complexity 1 41 0 358 284 111 31 chr4 119918831 119918993 -64369669 + MIR3 SINE MIR 24 198 -10 1701 297 140 16 chr4 119919114 119920186 -64368476 + L2 LINE L2 1853 3060 -212 180 310 78 70 chr4 119920818 119920947 -64367715 - MIR SINE MIR -58 150 21 258 32 0 0 chr4 119921638 119921669 -64366993 + (TAAAA)n Simple_repeat Simple_repeat 1 31 0 45 35 0 35 chr4 119922410 119922495 -64366167 + AT_rich Low_complexity Low_complexity 1 82 0 1777 176 13 13 chr4 119924034 119924346 -64364316 - AluJb SINE Alu 0 312 1 188 214 0 71 chr4 119924448 119924504 -64364158 - L2 LINE L2 0 3313 3262 27 0 0 0 chr4 119927816 119927843 -64360819 + AT_rich Low_complexity Low_complexity 1 27 0 210 147 0 0 chr4 119929058 119929092 -64359570 + (CA)n Simple_repeat Simple_repeat 1 34 0 421 329 41 20 chr4 119929922 119930068 -64358594 + MIR SINE MIR 6 154 -108 2002 112 3 30 chr4 119930450 119930753 -64357909 + AluSx SINE Alu 1 295 -17 744 323 158 2 chr4 119930825 119931385 -64357277 - L2 LINE L2 0 3313 2650 802 311 108 8 chr4 119931411 119931771 -64356891 - L2 LINE L2 -912 2402 2007 433 214 31 20 chr4 119931929 119932027 -64356635 - L2 LINE L2 0 3313 3215 1528 188 30 26 chr4 119932478 119932782 -64355880 + AluJo SINE Alu 6 310 -2 189 0 0 0 chr4 119935351 119935372 -64353290 + (A)n Simple_repeat Simple_repeat 1 21 0 2616 188 65 47 chr4 119935753 119936472 -64352190 + L1MD2 LINE L1 5627 6358 -1 233 238 168 24 chr4 119936564 119936703 -64351959 + MIR SINE MIR 37 194 -63 240 330 46 46 chr4 119938168 119938277 -64350385 + L2 LINE L2 3129 3237 -35 249 194 0 45 chr4 119938313 119938380 -64350282 + (CAAT)n Simple_repeat Simple_repeat 3 66 0 1073 161 6 6 chr4 119938876 119939050 -64349612 + FAM SINE Alu 1 174 -1 228 290 0 0 chr4 119939643 119939705 -64348957 - MIR SINE MIR -14 248 187 2344 95 0 0 chr4 119939820 119940115 -64348547 - AluSx SINE Alu -17 295 1 521 307 110 18 chr4 119940139 119940367 -64348295 - MIR SINE MIR -11 251 3 799 251 65 32 chr4 119940551 119940802 -64347860 - MIR SINE MIR -5 257 3 2057 88 42 0 chr4 119941722 119942006 -64346656 + AluY SINE Alu 1 296 -15 186 43 0 0 chr4 119942018 119942041 -64346621 + (CAAAAA)n Simple_repeat Simple_repeat 3 25 0 747 256 184 27 chr4 119942599 119943120 -64345542 - L2 LINE L2 0 3313 2720 4057 75 5 7 chr4 119943877 119944448 -64344214 + L1PA14 LINE L1 5568 6137 -24 207 0 50 50 chr4 119944451 119944491 -64344171 + (TAAAA)n Simple_repeat Simple_repeat 1 40 0 312 272 40 40 chr4 119944515 119944688 -64343974 + L1MC5 LINE L1 7507 7679 -282 6728 123 88 7 chr4 119944720 119945885 -64342777 - Tigger1 DNA MER2_type -1 2417 1159 1544 98 4 4 chr4 119945881 119946116 -64342546 - Tigger1 DNA MER2_type -1762 656 422 * 26 30 0 0 chr4 119946368 119946401 -64342261 + AT_rich Low_complexity Low_complexity 1 33 0 524 231 48 20 chr4 119946401 119946548 -64342114 - MIR SINE MIR -49 213 63 2150 110 20 3 chr4 119947600 119947899 -64340763 - AluSx SINE Alu -8 304 1 287 295 108 0 chr4 119948172 119948301 -64340361 + MIR SINE MIR 96 238 -24 249 244 37 61 chr4 119948419 119948501 -64340161 - MIR SINE MIR -117 91 12 2248 106 0 13 chr4 119948976 119949287 -64339375 + AluSx SINE Alu 1 307 -5 327 340 88 19 chr4 119949390 119949605 -64339057 - MIR SINE MIR -12 250 21 1644 174 45 45 chr4 119951200 119951574 -64337088 - MLT1A2 LTR MaLR 0 374 1 1920 170 36 0 chr4 119951995 119952331 -64336331 - MER7A DNA MER2_type 0 346 1 209 211 0 0 chr4 119952482 119952520 -64336142 + (CA)n Simple_repeat Simple_repeat 1 38 0 180 0 0 0 chr4 119953394 119953414 -64335248 + (A)n Simple_repeat Simple_repeat 1 20 0 258 286 68 38 chr4 119954307 119954440 -64334222 - L2 LINE L2 -13 3300 3164 2484 57 0 3 chr4 119956741 119957037 -64331625 - AluY SINE Alu -16 295 1 1756 155 18 4 chr4 119957077 119957355 -64331307 + AluJo SINE Alu 1 282 -30 438 296 132 16 chr4 119958087 119958276 -64330386 - MIR SINE MIR -39 223 13 243 0 0 0 chr4 119958360 119958387 -64330275 + (TAA)n Simple_repeat Simple_repeat 2 28 0 273 295 0 0 chr4 119963537 119963615 -64325047 - MIR SINE MIR -1 261 184 966 277 64 16 chr4 119963700 119964075 -64324587 + LTR16A LTR ERVL 18 410 -40 326 224 0 0 chr4 119964108 119964166 -64324496 - MIR SINE MIR -188 74 17 758 149 26 13 chr4 119964366 119964520 -64324142 - L1PA6 LINE L1 0 6154 5999 2304 95 7 0 chr4 119965234 119965540 -64323122 + AluSx SINE Alu 1 308 -4 878 145 0 0 chr4 119966362 119966493 -64322169 - FLAM_C SINE Alu -2 141 11 865 20 0 0 chr4 119967445 119967546 -64321116 - L1PA5 LINE L1 -2 6152 6052 307 226 75 19 chr4 119967576 119967682 -64320980 + L1MD3 LINE L1 7884 7995 0 2215 123 0 0 chr4 119967949 119968249 -64320413 - AluSx SINE Alu -12 300 1 1250 125 0 0 chr4 119968318 119968494 -64320168 - AluSg/x SINE Alu 0 310 135 225 0 0 0 chr4 119969926 119969951 -64318711 + (A)n Simple_repeat Simple_repeat 1 25 0 25 31 0 0 chr4 119970120 119970152 -64318510 + AT_rich Low_complexity Low_complexity 1 32 0 262 182 182 0 chr4 119970776 119970831 -64317831 - L2 LINE L2 0 3313 3249 216 326 174 0 chr4 119970878 119971050 -64317612 - MIR SINE MIR 0 262 61 1928 244 85 35 chr4 119971424 119971723 -64316939 + L1ME3A LINE L1 5324 5607 -563 2309 34 0 0 chr4 119971723 119971989 -64316673 + AluY SINE Alu 1 266 -45 1928 244 85 35 chr4 119971989 119972493 -64316169 + L1ME3A LINE L1 5607 6167 -3 1975 145 19 19 chr4 119973925 119974290 -64314372 - MER47A DNA MER2_type 0 366 2 671 125 0 161 chr4 119974421 119974589 -64314073 - FAM SINE Alu -21 164 24 426 20 0 0 chr4 119974746 119974797 -64313865 + (TG)n Simple_repeat Simple_repeat 2 52 0 23 0 0 0 chr4 119977697 119977720 -64310942 + GC_rich Low_complexity Low_complexity 1 23 0 315 164 0 0 chr4 119977841 119977902 -64310760 + (CCG)n Simple_repeat Simple_repeat 1 61 0 229 299 56 28 chr4 119981017 119981124 -64307538 + MIR SINE MIR 73 182 -80 261 0 0 0 chr4 119982439 119982468 -64306194 + (TG)n Simple_repeat Simple_repeat 1 29 0 422 209 107 80 chr4 119982997 119983184 -64305478 - L2 LINE L2 0 3313 3122 244 230 103 0 chr4 119983184 119983271 -64305391 - MER94 DNA DNA -1 133 38 220 302 43 43 chr4 119983309 119983425 -64305237 - L2 LINE L2 -190 3123 3008 253 246 70 0 chr4 119983476 119983533 -64305129 + L2 LINE L2 3210 3270 -2 37725 40 4 7 chr4 119983811 119989980 -64298682 - L1PA4 LINE L1 -7 6148 1 21 0 0 0 chr4 119990036 119990057 -64298605 + AT_rich Low_complexity Low_complexity 1 21 0 668 162 81 22 chr4 119990309 119990445 -64298217 + AluJb SINE Alu 158 301 -11 1922 144 24 3 chr4 119990639 119990931 -64297731 + AluSx SINE Alu 1 298 -14 201 267 116 23 chr4 119991196 119991282 -64297380 - MIR SINE MIR 0 262 169 2153 108 17 0 chr4 119991512 119991799 -64296863 + AluSg SINE Alu 1 292 -18 479 191 0 11 chr4 119992230 119992324 -64296338 + Tigger7 DNA MER2_type 2395 2487 0 2489 87 0 0 chr4 119992633 119992942 -64295720 + AluSc SINE Alu 1 309 0 365 304 80 14 chr4 119993689 119993827 -64294835 - MIR SINE MIR -112 150 4 189 94 0 0 chr4 119994010 119994042 -64294620 + (A)n Simple_repeat Simple_repeat 1 32 0 403 257 66 29 chr4 119994460 119994596 -64294066 + L2 LINE L2 3173 3313 0 1008 274 132 23 chr4 119994826 119995379 -64293283 - L2 LINE L2 0 3313 2708 570 148 10 0 chr4 119995412 119995513 -64293149 + MSTD LTR MaLR 256 357 -39 4808 110 21 17 chr4 119995514 119995808 -64292854 + L1MA2 LINE L1 5185 5476 -828 4808 95 28 17 chr4 119995808 119995876 -64292786 + L1MA2 LINE L1 5546 5612 -692 1947 131 30 20 chr4 119995876 119996181 -64292481 + AluSq SINE Alu 6 313 0 4808 95 28 17 chr4 119996181 119996704 -64291958 + L1MA2 LINE L1 5612 6149 -155 2281 112 0 3 chr4 119996704 119997009 -64291653 + AluSx SINE Alu 1 304 -8 4808 95 28 17 chr4 119997009 119997164 -64291498 + L1MA2 LINE L1 6149 6301 -3 4808 110 21 17 chr4 119997164 119997186 -64291476 + L1MA2 LINE L1 5476 6301 -3 310 137 0 0 chr4 119997213 119997264 -64291398 + MSTD LTR MaLR 346 396 0 572 264 65 91 chr4 119997265 119997541 -64291121 - L2 LINE L2 -734 2580 2312 1467 267 88 43 chr4 119997638 119998228 -64290434 + MLT1G LTR MaLR 1 578 -12 7075 52 3 3 chr4 119999470 120000613 -64288049 - L1PA7 LINE L1 -2 6152 5013 183 42 0 0 chr4 120000614 120000638 -64288024 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2207 117 3 0 chr4 120000789 120001088 -64287574 - AluSx SINE Alu -12 300 1 1091 83 0 0 chr4 120001089 120001221 -64287441 - AluSq/x SINE Alu -179 134 3 747 215 7 0 chr4 120001319 120001463 -64287199 - MER58B DNA MER1_type 0 341 197 274 300 5 16 chr4 120002821 120002910 -64285752 + MIR SINE MIR 2 90 -118 412 252 60 73 chr4 120003489 120003640 -64285022 - L2 LINE L2 0 3313 3165 753 287 74 8 chr4 120004946 120005190 -64283472 + MIR SINE MIR 3 262 0 2045 133 33 10 chr4 120005523 120005824 -64282838 + AluSx SINE Alu 1 308 -4 27 49 0 0 chr4 120006153 120006194 -64282468 + AT_rich Low_complexity Low_complexity 1 41 0 228 67 0 0 chr4 120007014 120007044 -64281618 + (GA)n Simple_repeat Simple_repeat 2 31 0 405 0 0 0 chr4 120007044 120007089 -64281573 + (CA)n Simple_repeat Simple_repeat 2 46 0 267 31 0 0 chr4 120008566 120008598 -64280064 + (TG)n Simple_repeat Simple_repeat 1 32 0 1791 158 10 20 chr4 120009425 120009729 -64278933 + AluJo SINE Alu 3 303 -9 237 65 0 0 chr4 120010070 120010101 -64278561 + (CA)n Simple_repeat Simple_repeat 1 31 0 410 169 0 14 chr4 120010130 120010201 -64278461 + MER112 DNA MER1_type 179 248 -12 678 253 31 27 chr4 120011508 120011733 -64276929 - MIR SINE MIR 0 262 37 2664 71 77 11 chr4 120011767 120012146 -64276516 + MLT2A1 LTR ERVL 1 404 -40 487 171 0 17 chr4 120012146 120012263 -64276399 + (TA)n Simple_repeat Simple_repeat 1 115 0 368 43 0 0 chr4 120012410 120012457 -64276205 + MLT2A1 LTR ERVL 107 153 -291 523 253 5 31 chr4 120012551 120012745 -64275917 + L1ME3A LINE L1 5696 5884 -286 429 228 27 47 chr4 120012734 120012883 -64275779 + L1ME3A LINE L1 5816 5961 -209 * 21 36 0 0 chr4 120013067 120013095 -64275567 + AT_rich Low_complexity Low_complexity 1 28 0 1368 135 179 24 chr4 120013156 120013408 -64275254 - AluSx SINE Alu -11 291 1 850 150 0 15 chr4 120013415 120013548 -64275114 - FLAM_C SINE Alu 0 133 3 706 206 116 11 chr4 120013993 120014182 -64274480 + MER3 DNA MER1_type 1 209 0 186 375 0 0 chr4 120015527 120015583 -64273079 + L2 LINE L2 3217 3272 0 4467 113 23 10 chr4 120016102 120016795 -64271867 + L1PA13 LINE L1 5462 6163 0 533 278 114 62 chr4 120016851 120017124 -64271538 + L3 LINE CR1 1290 1576 -1 232 294 13 44 chr4 120017814 120017949 -64270713 + GA-rich Low_complexity Low_complexity 6 221 0 3548 39 0 0 chr4 120018024 120018484 -64270178 - L1PA4 LINE L1 -3735 2411 1952 24436 34 3 0 chr4 120018484 120022231 -64266431 + L1PA4 LINE L1 2397 6147 -8 216 0 0 0 chr4 120022401 120022425 -64266237 + (A)n Simple_repeat Simple_repeat 1 24 0 226 189 19 0 chr4 120022623 120022676 -64265986 + Alu SINE Alu 247 300 0 560 328 252 8 chr4 120023397 120023937 -64264725 - L2 LINE L2 0 3313 2643 1508 177 38 41 chr4 120023944 120024312 -64264350 + L1MA7 LINE L1 5915 6281 -10 963 266 55 31 chr4 120024321 120024739 -64263923 - L2 LINE L2 -665 2649 2222 1875 173 0 3 chr4 120024743 120025049 -64263613 - AluJb SINE Alu -7 305 1 1864 119 0 0 chr4 120025186 120025479 -64263183 + L1MA4A LINE L1 6008 6300 -3 268 202 30 147 chr4 120025767 120025965 -64262697 - MER102a DNA MER1_type 0 330 156 351 0 0 0 chr4 120025968 120026007 -64262655 + (CA)n Simple_repeat Simple_repeat 2 40 0 2562 62 0 0 chr4 120026124 120026432 -64262230 - AluY SINE Alu -3 308 1 539 303 32 5 chr4 120028418 120028603 -64260059 - MIR SINE MIR -65 197 8 1999 124 50 29 chr4 120029362 120029591 -64259071 + L1MA8 LINE L1 5904 6146 -145 2250 110 0 0 chr4 120029591 120029890 -64258772 + AluSx SINE Alu 1 299 -13 1999 124 50 29 chr4 120029890 120030039 -64258623 + L1MA8 LINE L1 6146 6290 -1 386 243 137 109 chr4 120031454 120031901 -64256761 + MLT1G1 LTR MaLR 21 595 0 21 36 0 0 chr4 120033081 120033109 -64255553 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 120033236 120033259 -64255403 + AT_rich Low_complexity Low_complexity 1 23 0 232 295 76 38 chr4 120034356 120034461 -64254201 - L2 LINE L2 -4 3268 3160 1548 191 3 36 chr4 120034649 120034952 -64253710 + AluJo SINE Alu 1 293 -19 6085 112 0 5 chr4 120035040 120036218 -64252444 - L1PA15 LINE L1 -8 6157 4996 1857 183 3 0 chr4 120036398 120036688 -64251974 + AluSx SINE Alu 1 291 -21 1246 162 143 34 chr4 120036710 120036739 -64251923 - AluSg1 SINE Alu -14 295 271 2094 108 38 54 chr4 120036739 120037109 -64251553 + THE1B LTR MaLR 1 364 0 1246 162 143 34 chr4 120037109 120037345 -64251317 - AluSg1 SINE Alu -38 271 1 639 224 90 32 chr4 120037351 120037730 -64250932 - Charlie7 DNA MER1_type -10 2602 2202 3243 232 76 43 chr4 120037876 120038916 -64249746 + MER69 DNA AcHobo 2 1075 -1451 1434 199 159 10 chr4 120038933 120039431 -64249231 + MER69 DNA AcHobo 1954 2525 -1 1184 265 74 60 chr4 120039437 120039617 -64249045 - Charlie7 DNA MER1_type -1883 729 553 1338 167 118 8 chr4 120039617 120039880 -64248782 - AluSx SINE Alu -20 292 1 1184 265 74 60 chr4 120039880 120040412 -64248250 - Charlie7 DNA MER1_type -2059 553 7 2233 108 3 0 chr4 120040717 120041012 -64247650 + AluSc SINE Alu 1 296 -13 751 313 200 36 chr4 120041715 120042551 -64246111 - HAL1b LINE L1 -850 1443 101 1081 92 0 0 chr4 120042850 120042991 -64245671 - AluSq SINE Alu -7 306 166 4392 113 98 47 chr4 120042991 120043773 -64244889 - LTR12 LTR ERV1 0 826 5 2049 182 30 61 chr4 120043827 120044432 -64244230 - pTR5 LTR ERV1 -1110 1328 743 1383 83 0 0 chr4 120044432 120044601 -64244061 - AluSq SINE Alu -144 169 1 299 293 125 39 chr4 120044901 120045539 -64243123 + L1MEd LINE L1 651 1343 -4862 1118 196 0 31 chr4 120045583 120045807 -64242855 + AluJo SINE Alu 86 302 -10 229 239 45 11 chr4 120045851 120045939 -64242723 + HAL1 LINE L1 1450 1540 -967 1632 173 25 6 chr4 120045945 120046263 -64242399 - L1MC1 LINE L1 0 6333 6010 321 294 43 11 chr4 120046505 120046689 -64241973 + L1MEd LINE L1 1595 1784 -4612 241 246 0 49 chr4 120046953 120047010 -64241652 + L1MEd LINE L1 2869 2927 -3288 2275 105 3 3 chr4 120047010 120047315 -64241347 + AluSp SINE Alu 1 305 -8 241 246 0 49 chr4 120047315 120047399 -64241263 + L1MEd LINE L1 2927 3003 -3212 1539 211 3 16 chr4 120047910 120048213 -64240449 + AluJo SINE Alu 5 303 -9 2266 84 3 0 chr4 120048228 120048512 -64240150 - AluSp SINE Alu -15 298 14 2262 109 3 0 chr4 120048995 120049307 -64239355 + AluSq SINE Alu 1 313 0 250 67 44 0 chr4 120049774 120049819 -64238843 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 7817 16 0 0 chr4 120049835 120050925 -64237737 - L1PA3 LINE L1 0 6155 5070 2354 64 3 0 chr4 120050925 120051223 -64237439 - AluY SINE Alu -12 299 1 446 281 37 49 chr4 120052373 120052537 -64236125 + MER5A DNA MER1_type 1 162 -27 2224 125 0 3 chr4 120053192 120053496 -64235166 + AluSx SINE Alu 1 303 -9 1886 103 3 81 chr4 120053502 120053822 -64234840 + AluSq SINE Alu 1 295 -18 382 284 9 26 chr4 120053931 120054047 -64234615 + MER81 DNA DNA 1 114 0 1869 168 30 0 chr4 120054685 120054983 -64233679 + AluJb SINE Alu 3 309 -3 5596 135 31 53 chr4 120055004 120055347 -64233315 + L1M4c LINE L1 19 368 -6016 1928 163 3 10 chr4 120055347 120055660 -64233002 + AluSx SINE Alu 2 312 0 5596 135 31 53 chr4 120055660 120056410 -64232252 + L1M4c LINE L1 368 1088 -5296 3973 134 153 11 chr4 120056425 120057273 -64231389 + L1M4c LINE L1 1269 2237 -4147 1199 199 28 0 chr4 120057273 120057489 -64231173 + AluJo SINE Alu 87 308 -4 1238 121 37 100 chr4 120057491 120057540 -64231122 + L1M4c LINE L1 2223 2274 -4108 2030 134 3 10 chr4 120057540 120057846 -64230816 + AluSx SINE Alu 1 304 -8 1238 121 37 100 chr4 120057846 120058187 -64230475 + L1M4c LINE L1 2274 2598 -3784 35934 31 23 1 chr4 120058230 120063653 -64225009 - L1PA3 LINE L1 0 6155 631 414 216 45 9 chr4 120063674 120063785 -64224877 + L1MB3 LINE L1 6028 6142 -41 11710 188 17 10 chr4 120063804 120063906 -64224756 - L1P LINE L1 -1529 4617 4517 2469 79 0 0 chr4 120063906 120064211 -64224451 - AluY SINE Alu -6 305 1 11710 188 17 10 chr4 120064211 120066629 -64222033 - L1P LINE L1 -1629 4517 2081 5761 116 9 2 chr4 120066637 120068158 -64220504 + L1PA14 LINE L1 4628 6148 -13 285 132 0 0 chr4 120068163 120068216 -64220446 + L1MB4 LINE L1 6127 6179 -1 309 262 37 37 chr4 120068352 120068459 -64220203 + L2 LINE L2 1890 1996 -1318 1067 156 20 52 chr4 120068460 120068710 -64219952 - MER96B DNA MER1_type? -142 275 34 214 294 192 0 chr4 120068770 120068916 -64219746 + L2 LINE L2 2067 2240 -1074 561 336 87 57 chr4 120069163 120069565 -64219097 + L2 LINE L2 2843 3256 -16 2236 119 3 0 chr4 120071729 120072031 -64216631 + AluSx SINE Alu 9 311 -1 2359 83 0 7 chr4 120072074 120072375 -64216287 - AluSc SINE Alu -10 299 1 2373 84 0 3 chr4 120073637 120073936 -64214726 + AluY SINE Alu 1 298 -13 2033 153 7 0 chr4 120073942 120074249 -64214413 + AluSx SINE Alu 1 309 -3 40794 49 2 0 chr4 120074693 120080784 -64207878 + L1PA4 LINE L1 49 6153 -2 210 37 0 0 chr4 120081162 120081189 -64207473 + (GA)n Simple_repeat Simple_repeat 2 28 0 438 298 88 51 chr4 120081290 120081505 -64207157 - MIR SINE MIR -20 242 20 25 0 0 0 chr4 120081970 120081995 -64206667 + AT_rich Low_complexity Low_complexity 1 25 0 2156 128 3 0 chr4 120082037 120082341 -64206321 + AluSx SINE Alu 1 305 -7 22 0 0 0 chr4 120084103 120084125 -64204537 + AT_rich Low_complexity Low_complexity 1 22 0 1939 162 3 13 chr4 120085388 120085696 -64202966 - AluJb SINE Alu -7 305 1 2294 132 0 0 chr4 120086071 120086381 -64202281 + AluSx SINE Alu 1 310 -2 233 57 29 0 chr4 120086943 120086978 -64201684 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 699 104 9 9 chr4 120087728 120087834 -64200828 + AluSq/x SINE Alu 1 106 -206 247 196 20 0 chr4 120087969 120088020 -64200642 + MLT1G1 LTR MaLR 223 274 -316 249 170 0 21 chr4 120088081 120088128 -64200534 + MLT1G1 LTR MaLR 287 332 -210 * 286 286 59 42 chr4 120088114 120088233 -64200429 + MLT1G1 LTR MaLR 442 562 -33 2031 112 0 7 chr4 120089109 120089399 -64199263 + AluSx SINE Alu 17 304 0 30 77 0 0 chr4 120090708 120090773 -64197889 + AT_rich Low_complexity Low_complexity 1 65 0 431 297 155 31 chr4 120092022 120092207 -64196455 - MARNA DNA Mariner -87 499 338 2236 123 13 0 chr4 120092207 120092515 -64196147 + AluSx SINE Alu 1 312 0 431 297 155 31 chr4 120092515 120092716 -64195946 - MARNA DNA Mariner -248 338 65 23 0 0 0 chr4 120094878 120094901 -64193761 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr4 120095353 120095385 -64193277 + AT_rich Low_complexity Low_complexity 1 32 0 366 172 30 0 chr4 120096163 120096262 -64192400 + (TA)n Simple_repeat Simple_repeat 1 102 0 1760 181 10 0 chr4 120096262 120096550 -64192112 - AluJb SINE Alu -21 291 1 1906 137 4 7 chr4 120096713 120096990 -64191672 - AluSx SINE Alu -16 296 21 1358 260 68 57 chr4 120097003 120097251 -64191411 - L2 LINE L2 -1 3312 3068 2053 78 33 0 chr4 120097251 120097571 -64191091 - AluSc SINE Alu 0 329 1 1358 260 68 57 chr4 120097571 120097864 -64190798 - L2 LINE L2 -245 3068 2750 481 203 8 8 chr4 120098558 120098681 -64189981 + CT-rich Low_complexity Low_complexity 3 125 0 1389 158 0 14 chr4 120099244 120099459 -64189203 - AluJb SINE Alu -100 212 1 970 231 57 37 chr4 120099482 120099780 -64188882 - L2 LINE L2 -5 3308 3005 352 266 102 43 chr4 120099917 120100192 -64188470 + L1MC4a LINE L1 4084 4380 -1766 1535 180 76 3 chr4 120100192 120100296 -64188366 + AluJb SINE Alu 1 96 -216 198 0 0 0 chr4 120100296 120100318 -64188344 + (TAA)n Simple_repeat Simple_repeat 2 23 0 1535 180 76 3 chr4 120100318 120100502 -64188160 + AluJb SINE Alu 96 310 -2 352 266 102 43 chr4 120100502 120100530 -64188132 + L1MC4a LINE L1 4380 4405 -1741 250 316 62 44 chr4 120100541 120101183 -64187479 + L1MC4a LINE L1 4513 5166 -980 793 266 159 19 chr4 120101225 120101589 -64187073 + L1MC4a LINE L1 5509 5923 -1885 24 32 0 0 chr4 120101780 120101811 -64186851 + AT_rich Low_complexity Low_complexity 1 31 0 2048 150 10 0 chr4 120101963 120102270 -64186392 - AluSx SINE Alu -2 310 1 203 229 0 0 chr4 120102380 120102415 -64186247 + MER5A DNA MER1_type 64 98 -91 643 317 81 24 chr4 120102679 120103061 -64185601 + MLT1I LTR MaLR 6 409 0 256 297 44 22 chr4 120103099 120103190 -64185472 - L2 LINE L2 0 3272 3180 339 328 66 11 chr4 120103687 120103870 -64184792 - MLT1L LTR MaLR -20 595 403 352 284 28 28 chr4 120104023 120104199 -64184463 - MLT1J LTR MaLR -333 178 3 1717 145 16 40 chr4 120104404 120104708 -64183954 + AluJb SINE Alu 13 309 -3 481 215 32 51 chr4 120104717 120104875 -64183787 + L1ME3 LINE L1 5941 6095 -67 2429 93 0 0 chr4 120104894 120105196 -64183466 + AluSq SINE Alu 1 302 -11 1664 193 3 7 chr4 120105210 120105505 -64183157 + AluJo SINE Alu 1 294 -18 204 264 79 39 chr4 120106820 120106932 -64181730 + MIR SINE MIR 20 187 -75 204 328 172 17 chr4 120106981 120107097 -64181565 + MIR3 SINE MIR 3 136 -72 540 250 87 163 chr4 120107217 120107609 -64181053 - L2 LINE L2 0 3272 2911 212 187 66 99 chr4 120108225 120108316 -64180346 - L2 LINE L2 -67 3246 3159 * 555 265 93 0 chr4 120108314 120108465 -64180197 - MIR SINE MIR -51 211 47 256 259 143 27 chr4 120108940 120109052 -64179610 - MIR SINE MIR -52 210 86 587 69 11 0 chr4 120109175 120109262 -64179400 - L1MA3 LINE L1 0 6305 6218 1260 115 0 17 chr4 120111166 120111340 -64177322 - AluSq SINE Alu -142 171 1 397 236 142 18 chr4 120111419 120111644 -64177018 + L1ME4a LINE L1 5844 6096 -25 479 146 0 56 chr4 120111646 120111735 -64176927 - FRAM SINE Alu -18 158 75 1364 7 0 0 chr4 120112408 120112558 -64176104 - AluY SINE Alu -8 303 154 292 211 0 0 chr4 120113333 120113385 -64175277 + L2 LINE L2 3262 3313 0 40783 33 22 1 chr4 120113401 120119464 -64169198 + L1PA3 LINE L1 1 6194 0 242 196 0 0 chr4 120119539 120119590 -64169072 - L1ME4a LINE L1 -94 6027 5977 476 259 35 75 chr4 120119825 120119999 -64168663 - MIR SINE MIR -87 175 9 505 289 102 19 chr4 120120220 120120545 -64168117 + MARNA DNA Mariner 174 525 -61 996 193 63 98 chr4 120120592 120120970 -64167692 + MLT1A1 LTR MaLR 1 365 0 1767 188 3 0 chr4 120121383 120121676 -64166986 + AluJb SINE Alu 1 294 -18 28 0 0 0 chr4 120122284 120122312 -64166350 + AT_rich Low_complexity Low_complexity 1 28 0 2475 115 129 95 chr4 120122312 120122734 -64165928 - L1MA7 LINE L1 -25 6266 5860 2261 122 0 0 chr4 120122734 120123046 -64165616 - AluSx SINE Alu 0 312 1 2475 115 129 95 chr4 120123046 120123116 -64165546 - L1MA7 LINE L1 -431 5860 5794 253 88 0 0 chr4 120123116 120123150 -64165512 + U2 snRNA snRNA 1 34 -154 2475 115 129 95 chr4 120123150 120123267 -64165395 - L1MA7 LINE L1 -497 5794 5601 41 36 0 0 chr4 120123267 120123322 -64165340 + AT_rich Low_complexity Low_complexity 1 55 0 6327 80 72 8 chr4 120123323 120124486 -64164176 - L1PA11 LINE L1 0 6174 4989 12914 208 21 31 chr4 120124487 120128224 -64160438 - L1P3 LINE L1 -2451 5133 1436 1274 180 40 74 chr4 120128233 120128583 -64160079 + THE1C LTR MaLR 1 338 -37 2302 88 7 0 chr4 120128587 120128882 -64159780 - AluSc SINE Alu -2 307 11 1120 208 25 53 chr4 120128900 120129184 -64159478 - L1P3 LINE L1 -7297 284 9 2549 141 33 14 chr4 120129194 120129944 -64158718 - L1M2 LINE L1 -669 5622 4864 603 173 0 0 chr4 120130072 120130176 -64158486 - AluSq/x SINE Alu -208 104 1 538 117 8 25 chr4 120130191 120130322 -64158340 + L1MC1 LINE L1 2380 2511 -3915 7859 208 66 28 chr4 120130323 120130405 -64158257 + L1MC1 LINE L1 2804 2881 -3732 2716 7 0 7 chr4 120130405 120130706 -64157956 + AluYa5 SINE Alu 1 299 -12 7859 208 66 28 chr4 120130706 120131020 -64157642 + L1MC1 LINE L1 2881 3182 -3431 2068 114 11 4 chr4 120131020 120131320 -64157342 + AluSx SINE Alu 2 303 0 7859 208 66 28 chr4 120131320 120131687 -64156975 + L1MC1 LINE L1 3182 3534 -3079 2189 133 0 0 chr4 120131687 120131987 -64156675 + AluSx SINE Alu 1 300 -12 7859 208 66 28 chr4 120131987 120132476 -64156186 + L1MC1 LINE L1 3534 4003 -2610 2241 133 13 39 chr4 120132476 120132514 -64156148 - THE1C LTR MaLR -3 372 335 2260 116 7 3 chr4 120132514 120132824 -64155838 + AluSq SINE Alu 1 311 -2 2241 133 13 39 chr4 120132824 120133167 -64155495 - THE1C LTR MaLR -40 335 1 7859 208 66 28 chr4 120133167 120133984 -64154678 + L1MC1 LINE L1 4003 4788 -1825 1904 157 10 13 chr4 120133984 120134290 -64154372 + AluJo SINE Alu 1 305 -7 7859 208 66 28 chr4 120134290 120135892 -64152770 + L1MC1 LINE L1 4788 6601 -12 749 189 66 134 chr4 120135924 120136364 -64152298 - LTR7 LTR ERV1 -40 410 1 3504 114 5 9 chr4 120136364 120136923 -64151739 - HERVH LTR ERV1 0 7713 7157 1351 150 15 11 chr4 120136916 120137176 -64151486 - HERVH LTR ERV1 -1697 6016 5756 * 3434 163 4 6 chr4 120137166 120137806 -64150856 - HERVH LTR ERV1 -1866 5225 3954 * 3842 137 3 3 chr4 120137789 120138426 -64150236 - HERVH LTR ERV1 -3720 3993 3357 9119 146 11 29 chr4 120138426 120140142 -64148520 - HERVH LTR ERV1 -4883 2830 1147 3614 178 49 48 chr4 120140137 120141278 -64147384 - HERVH LTR ERV1 -6257 1456 1 * 681 89 20 0 chr4 120141285 120141386 -64147276 - LTR7 LTR ERV1 -7 443 341 673 184 81 5 chr4 120141419 120141604 -64147058 + L1MD3 LINE L1 7788 7986 -9 1697 159 29 26 chr4 120141609 120141917 -64146745 + AluJo SINE Alu 2 310 -2 23 0 0 0 chr4 120142298 120142321 -64146341 + AT_rich Low_complexity Low_complexity 1 23 0 23 86 0 0 chr4 120142438 120142496 -64146166 + AT_rich Low_complexity Low_complexity 1 58 0 21 36 0 0 chr4 120142567 120142595 -64146067 + AT_rich Low_complexity Low_complexity 1 28 0 383 265 68 27 chr4 120143456 120143603 -64145059 + MLT1L LTR MaLR 387 539 -76 1919 138 17 17 chr4 120144005 120144142 -64144520 + AluSx SINE Alu 1 137 -175 2381 81 3 0 chr4 120144142 120144439 -64144223 + AluSp SINE Alu 1 298 -15 1919 138 17 17 chr4 120144439 120144598 -64144064 + AluSx SINE Alu 136 297 -15 467 108 15 0 chr4 120144661 120144726 -64143936 - AluJo SINE Alu -41 271 206 1037 150 0 13 chr4 120144728 120144881 -64143781 - AluJo SINE Alu -153 159 9 30 0 0 0 chr4 120146184 120146214 -64142448 + AT_rich Low_complexity Low_complexity 1 30 0 312 231 125 100 chr4 120146790 120146950 -64141712 - MIR SINE MIR -95 167 4 770 157 7 26 chr4 120147858 120148011 -64140651 + MER3 DNA MER1_type 38 187 -22 23 78 0 0 chr4 120148444 120148495 -64140167 + AT_rich Low_complexity Low_complexity 1 51 0 490 188 15 113 chr4 120149039 120149172 -64139490 - L2 LINE L2 -3 3310 3191 250 324 0 0 chr4 120149797 120149865 -64138797 + Charlie1 DNA MER1_type 1 68 -2693 * 1121 185 127 33 chr4 120149857 120150220 -64138442 + Charlie1 DNA MER1_type 2365 2761 0 645 273 26 99 chr4 120151039 120151179 -64137483 + MER102a DNA MER1_type 2 151 -1266 2058 113 0 0 chr4 120151179 120151454 -64137208 - AluY SINE Alu -12 299 25 645 273 26 99 chr4 120151454 120151665 -64136997 + MER102a DNA MER1_type 151 327 -3 2835 13 0 0 chr4 120151824 120152136 -64136526 + AluYb8 SINE Alu 1 312 -6 1595 196 95 121 chr4 120152189 120153111 -64135551 + L1MC5 LINE L1 6633 7525 -436 2202 116 3 13 chr4 120153111 120153421 -64135241 + AluSx SINE Alu 1 307 -5 1595 196 95 121 chr4 120153421 120153563 -64135099 + L1MC5 LINE L1 7525 7669 -292 502 176 72 16 chr4 120153689 120153814 -64134848 + L1MB2 LINE L1 6039 6170 -1 2190 121 0 13 chr4 120154227 120154541 -64134121 + AluJb SINE Alu 1 310 -2 253 315 86 34 chr4 120154646 120154771 -64133891 + L1ME4a LINE L1 5543 5660 -461 2390 79 0 7 chr4 120154771 120155076 -64133586 + AluY SINE Alu 1 303 -8 253 315 86 34 chr4 120155076 120155217 -64133445 + L1ME4a LINE L1 5660 5823 -298 37632 51 3 4 chr4 120155263 120161020 -64127642 - L1PA5 LINE L1 -6 6148 399 274 267 29 9 chr4 120161097 120161202 -64127460 + L1ME4a LINE L1 6004 6110 -11 1583 177 32 11 chr4 120161541 120161824 -64126838 + AluJb SINE Alu 1 289 -23 259 106 0 0 chr4 120161915 120161962 -64126700 + Alu SINE Alu 255 301 0 2217 96 0 21 chr4 120161971 120162262 -64126400 + AluSx SINE Alu 16 300 -12 612 86 43 0 chr4 120162393 120162486 -64126176 + L1MA8 LINE L1 6176 6272 -19 284 149 75 9 chr4 120162488 120162595 -64126067 + (TA)n Simple_repeat Simple_repeat 1 114 0 34 42 0 0 chr4 120162606 120162654 -64126008 + AT_rich Low_complexity Low_complexity 1 48 0 184 269 64 51 chr4 120162861 120162939 -64125723 + L3b LINE CR1 1478 1556 -27 344 172 92 0 chr4 120164034 120164121 -64124541 - L1MA4A LINE L1 -27 6276 6182 441 262 18 0 chr4 120164134 120164302 -64124360 - L1MA4 LINE L1 -207 6093 5923 221 217 58 133 chr4 120164489 120164609 -64124053 - L3 LINE CR1 -27 1550 1440 704 277 129 39 chr4 120164746 120165183 -64123479 + L1ME3A LINE L1 5319 5826 -344 1766 145 3 58 chr4 120165183 120165493 -64123169 + AluJb SINE Alu 12 304 -8 704 277 129 39 chr4 120165493 120165651 -64123011 + L1ME3A LINE L1 5826 5968 -202 274 291 80 20 chr4 120165748 120165899 -64122763 + L1ME3A LINE L1 5990 6149 -21 1712 167 7 0 chr4 120166378 120166647 -64122015 - AluJo SINE Alu -15 297 27 441 61 15 0 chr4 120166647 120166713 -64121949 + MER41A LTR ERV1 400 466 -88 1770 94 41 19 chr4 120167049 120167315 -64121347 - AluSq SINE Alu 0 313 42 2060 84 19 0 chr4 120167415 120167676 -64120986 + AluSp SINE Alu 33 298 -15 22 56 0 0 chr4 120167714 120167750 -64120912 + AT_rich Low_complexity Low_complexity 1 36 0 28687 109 18 57 chr4 120167763 120174166 -64114496 + L1PA7 LINE L1 9 6154 0 1990 156 3 0 chr4 120174236 120174544 -64114118 - AluSx SINE Alu -3 309 1 872 174 73 0 chr4 120174565 120174743 -64113919 + MER2 DNA MER2_type 2 192 -153 348 244 0 26 chr4 120174774 120174852 -64113810 + MER2 DNA MER2_type 270 345 0 252 128 0 0 chr4 120174852 120174891 -64113771 - L1ME3 LINE L1 -76 6086 6048 554 202 16 16 chr4 120176685 120176809 -64111853 - Charlie8 DNA MER1_type -2220 197 74 775 217 19 0 chr4 120176809 120176966 -64111696 - AluJo/FRAM SINE Alu -6 296 137 1428 174 38 35 chr4 120176966 120177253 -64111409 - AluSx SINE Alu -15 297 10 1585 176 41 7 chr4 120177591 120177881 -64110781 - AluJo SINE Alu -12 300 1 21 0 0 0 chr4 120178219 120178240 -64110422 + AT_rich Low_complexity Low_complexity 1 21 0 1891 186 42 7 chr4 120178524 120178955 -64109707 + L1ME1 LINE L1 5716 6161 -5 270 311 92 25 chr4 120180083 120180202 -64108460 - MIR SINE MIR -102 160 34 188 154 26 26 chr4 120180367 120180406 -64108256 - L2 LINE L2 -19 3294 3256 595 210 77 100 chr4 120180657 120180957 -64107705 + MER51C LTR ERV1 348 640 0 1275 146 123 5 chr4 120181682 120181901 -64106761 + AluJb SINE Alu 40 284 -28 489 168 111 188 chr4 120182046 120182145 -64106517 - MER46C DNA MER2_type -2 336 231 1423 172 42 18 chr4 120182145 120182430 -64106232 + AluJo SINE Alu 1 292 -20 489 168 111 188 chr4 120182430 120182635 -64106027 - MER46C DNA MER2_type -107 231 60 2159 120 7 0 chr4 120182635 120182934 -64105728 + AluSx SINE Alu 1 301 -11 489 168 111 188 chr4 120182934 120182980 -64105682 - MER46C DNA MER2_type -278 60 12 1871 94 66 18 chr4 120183763 120184049 -64104613 - AluSg SINE Alu -10 300 1 1185 117 6 6 chr4 120234197 120234368 -64054294 - AluSx SINE Alu -141 171 1 1835 135 11 0 chr4 120234368 120234635 -64054027 + AluSx SINE Alu 26 295 -17 284 139 0 0 chr4 120234704 120234747 -64053915 - THE1C LTR MaLR 0 375 333 1240 83 13 0 chr4 120234749 120234905 -64053757 + L1PA10 LINE L1 6011 6168 0 1134 96 0 40 chr4 120234905 120235074 -64053588 + L1MA4A LINE L1 6129 6298 -5 1363 105 28 26 chr4 120235090 120235386 -64053276 - THE1C LTR MaLR -25 350 1 193 158 18 123 chr4 120236207 120236264 -64052398 + L2 LINE L2 3262 3312 -1 2116 104 11 3 chr4 120236393 120236680 -64051982 + AluSq SINE Alu 1 289 -24 194 62 31 0 chr4 120236830 120236862 -64051800 + (TAA)n Simple_repeat Simple_repeat 1 33 0 375 199 60 106 chr4 120236871 120237022 -64051640 - MIR SINE MIR 0 262 119 882 160 0 0 chr4 120237124 120237255 -64051407 - FLAM_C SINE Alu -2 131 1 790 149 16 0 chr4 120237425 120237546 -64051116 - AluSg/x SINE Alu -14 296 174 2076 135 7 0 chr4 120237932 120238229 -64050433 + AluSx SINE Alu 1 299 -13 30 69 0 0 chr4 120238745 120238803 -64049859 + AT_rich Low_complexity Low_complexity 1 58 0 2214 101 3 0 chr4 120239041 120239338 -64049324 + AluSg SINE Alu 1 298 -12 285 243 99 18 chr4 120239354 120239465 -64049197 + L1ME4a LINE L1 5989 6108 -13 26 30 0 0 chr4 120239478 120239511 -64049151 + AT_rich Low_complexity Low_complexity 1 33 0 278 248 40 0 chr4 120239643 120239741 -64048921 - L1MC4 LINE L1 -1327 6668 6612 1989 150 0 0 chr4 120239786 120240079 -64048583 + AluSx SINE Alu 1 293 -19 2107 94 0 66 chr4 120240079 120240397 -64048265 + AluSx SINE Alu 1 297 -15 469 285 24 0 chr4 120240400 120240523 -64048139 + MIR SINE MIR 19 144 -118 848 175 35 18 chr4 120240600 120240771 -64047891 - FRAM SINE Alu -8 168 1 2163 79 0 4 chr4 120241059 120241326 -64047336 - AluSg SINE Alu -13 297 32 2266 105 0 7 chr4 120241340 120241634 -64047028 - AluSg SINE Alu -18 292 1 2466 77 0 10 chr4 120241799 120242112 -64046550 + AluY SINE Alu 1 310 -1 677 207 0 0 chr4 120242182 120242298 -64046364 + FLAM_A SINE Alu 1 116 -17 1499 160 72 4 chr4 120242308 120242570 -64046092 - AluJb SINE Alu -24 288 9 381 290 30 18 chr4 120243563 120243732 -64044930 + L2 LINE L2 3105 3275 -38 1992 116 13 26 chr4 120243736 120244038 -64044624 - AluSx SINE Alu -14 298 1 1601 176 3 49 chr4 120244038 120244344 -64044318 - AluJb SINE Alu -20 292 1 1503 204 20 33 chr4 120244584 120244888 -64043774 + AluJb SINE Alu 1 300 -12 2355 97 0 0 chr4 120245350 120245648 -64043014 - AluSg SINE Alu -12 298 1 542 139 19 37 chr4 120245843 120245951 -64042711 + AluSq/x SINE Alu 2 107 -206 2409 82 3 0 chr4 120246068 120246360 -64042302 - AluSq SINE Alu -20 293 1 13514 116 17 41 chr4 120246417 120248585 -64040077 - Tigger1 DNA MER2_type -1 2417 301 283 81 0 0 chr4 120248589 120248626 -64040036 - Tigger1 DNA MER2_type -2381 37 1 321 237 13 0 chr4 120248668 120248744 -64039918 + L2 LINE L2 3196 3272 0 987 137 83 48 chr4 120248843 120248988 -64039674 - LTR54 LTR ERV1 -2 508 369 1971 152 33 0 chr4 120248988 120249290 -64039372 + AluSx SINE Alu 1 312 0 987 137 83 48 chr4 120249290 120249516 -64039146 - LTR54 LTR ERV1 -141 369 64 2198 229 35 17 chr4 120249530 120250049 -64038613 - HUERS-P1 LTR ERV1 -375 7162 6635 817 63 0 36 chr4 120250115 120250226 -64038436 - U6 snRNA snRNA 0 107 1 1870 97 0 4 chr4 120250257 120250494 -64038168 + AluSq SINE Alu 1 236 -77 685 144 0 0 chr4 120250494 120250591 -64038071 - AluS SINE Alu -215 98 2 3548 225 35 72 chr4 120250594 120250924 -64037738 - HUERS-P1 LTR ERV1 -936 3935 3594 1503 144 77 85 chr4 120250924 120251104 -64037558 - MER1B DNA MER1_type -2373 337 160 2115 124 14 0 chr4 120251104 120251394 -64037268 - AluSx SINE Alu -18 294 1 1503 144 77 85 chr4 120251394 120251553 -64037109 - MER1B DNA MER1_type -2550 160 1 3548 225 35 72 chr4 120251553 120252123 -64036539 - HUERS-P1 LTR ERV1 -1277 3594 3005 2318 81 3 16 chr4 120252123 120252430 -64036232 + AluSc SINE Alu 1 303 -6 3548 225 35 72 chr4 120252430 120252652 -64036010 - HUERS-P1 LTR ERV1 -1866 3005 2776 2843 109 28 23 chr4 120252652 120253084 -64035578 - MER57B LTR ERV1 0 434 1 3548 225 35 72 chr4 120253084 120253099 -64035563 - HUERS-P1 LTR ERV1 -2095 2776 2762 2025 140 0 0 chr4 120253099 120253377 -64035285 - AluSx SINE Alu -34 278 1 3548 225 35 72 chr4 120253377 120253447 -64035215 - HUERS-P1 LTR ERV1 -2109 2762 2771 1853 128 50 27 chr4 120253447 120253745 -64034917 + AluJb SINE Alu 1 305 -7 3548 225 35 72 chr4 120253745 120253814 -64034848 - HUERS-P1 LTR ERV1 -2099 2772 2702 1763 183 0 29 chr4 120253818 120254130 -64034532 + AluJo SINE Alu 1 303 -9 466 120 27 13 chr4 120254142 120254217 -64034445 + U6 snRNA snRNA 29 104 -3 1844 124 55 15 chr4 120254232 120254537 -64034125 + AluSx SINE Alu 1 316 0 277 181 26 52 chr4 120254591 120254677 -64033985 - HUERS-P1 LTR ERV1 -3199 2911 2654 814 178 5 68 chr4 120254776 120254967 -64033695 - HUERS-P1 LTR ERV1 -6694 843 665 1444 210 14 14 chr4 120254979 120255265 -64033397 - AluJo SINE Alu -25 287 2 2418 79 0 10 chr4 120255275 120255580 -64033082 - AluY SINE Alu -9 302 1 1844 144 0 40 chr4 120255608 120255907 -64032755 - AluJb SINE Alu -15 297 11 407 193 0 0 chr4 120255955 120256043 -64032619 + AluJ/FLAM SINE Alu 8 95 -217 264 143 0 0 chr4 120256218 120256274 -64032388 + (T)n Simple_repeat Simple_repeat 1 56 0 24 32 0 0 chr4 120256359 120256390 -64032272 + AT_rich Low_complexity Low_complexity 1 31 0 469 265 0 0 chr4 120257012 120257110 -64031552 + AluSg/x SINE Alu 208 305 -4 257 175 0 70 chr4 120257112 120257169 -64031493 - AluSp SINE Alu -133 170 118 2030 152 13 3 chr4 120257176 120257479 -64031183 - AluSp SINE Alu -7 306 1 2032 195 113 24 chr4 120257663 120258125 -64030537 + MLT1D LTR MaLR 1 503 -2 833 76 0 8 chr4 120258185 120258304 -64030358 + (TTCC)n Simple_repeat Simple_repeat 3 120 0 751 178 7 22 chr4 120258304 120258428 -64030234 - AluJb SINE Alu -187 125 2 2299 113 0 7 chr4 120258455 120258765 -64029897 + AluSx SINE Alu 1 308 -4 231 203 51 0 chr4 120258776 120258835 -64029827 - L1MC/D LINE L1 -1964 5844 5783 2304 105 3 0 chr4 120258870 120259176 -64029486 - AluSx SINE Alu -5 307 1 2045 132 0 14 chr4 120259494 120259789 -64028873 - AluSx SINE Alu -21 291 1 1972 131 50 0 chr4 120259982 120260279 -64028383 - AluSx SINE Alu 0 312 1 263 278 57 10 chr4 120260280 120260400 -64028262 - L1P LINE L1 -1139 5007 4883 694 200 0 22 chr4 120260414 120260549 -64028113 - FLAM_C SINE Alu -11 132 1 288 279 189 0 chr4 120260577 120260699 -64027963 + MIR SINE MIR 48 192 -70 2444 70 0 3 chr4 120261143 120261445 -64027217 + AluSg SINE Alu 1 301 -9 1170 130 6 0 chr4 120261445 120261622 -64027040 + AluSg/x SINE Alu 134 311 -1 2545 47 3 28 chr4 120261940 120262259 -64026403 + AluY SINE Alu 1 311 0 420 250 65 24 chr4 120262352 120262476 -64026186 + L2 LINE L2 3183 3311 -2 2300 107 0 0 chr4 120262761 120263052 -64025610 - AluSq SINE Alu -22 291 1 1851 135 0 4 chr4 120263168 120263434 -64025228 + AluSg SINE Alu 45 309 -1 1167 204 123 0 chr4 120265086 120265346 -64023316 - AluJb SINE Alu -10 292 1 2167 110 3 17 chr4 120265664 120265963 -64022699 + AluSx SINE Alu 1 295 -17 219 227 0 0 chr4 120266109 120266153 -64022509 + L2 LINE L2 3270 3313 0 2318 78 0 7 chr4 120266296 120266617 -64022045 - AluSp SINE Alu 0 320 2 2188 123 0 0 chr4 120266709 120267019 -64021643 - AluSx SINE Alu 0 312 3 2106 121 7 0 chr4 120267033 120267331 -64021331 - AluSx SINE Alu 0 312 13 764 191 0 14 chr4 120267513 120267654 -64021008 - FLAM_C SINE Alu -3 140 2 203 182 0 0 chr4 120267663 120267696 -64020966 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 3855 62 18 57 chr4 120267702 120268263 -64020399 - L1PA8 LINE L1 -1 6171 5633 239 269 19 56 chr4 120268778 120268886 -64019776 - MIR3 SINE MIR -15 193 90 2239 104 7 23 chr4 120268947 120269254 -64019408 + AluSg1 SINE Alu 1 302 -7 1026 88 7 14 chr4 120269372 120269520 -64019142 - L1PA10 LINE L1 -3 6165 6019 2183 98 3 17 chr4 120269615 120269911 -64018751 - AluSx SINE Alu -20 292 1 252 237 0 0 chr4 120269918 120269956 -64018706 + T-rich Low_complexity Low_complexity 1 38 0 30 27 0 0 chr4 120271072 120271109 -64017553 + GC_rich Low_complexity Low_complexity 1 37 0 2220 69 19 53 chr4 120272447 120272765 -64015897 - AluSg SINE Alu -3 307 1 2111 127 0 38 chr4 120273366 120273682 -64014980 + AluSx SINE Alu 1 304 -8 1065 193 166 23 chr4 120273693 120273952 -64014710 + AluSg SINE Alu 5 300 0 269 217 32 4 chr4 120275280 120275354 -64013308 + MIR SINE MIR 90 171 -37 2347 134 39 24 chr4 120275868 120276279 -64012383 - L1MC1 LINE L1 -1 6332 5916 2192 112 7 0 chr4 120276505 120276799 -64011863 - AluSx SINE Alu -16 296 1 1878 126 3 63 chr4 120277691 120278008 -64010654 - AluSx SINE Alu -14 298 1 1138 74 0 0 chr4 120278008 120278143 -64010519 - AluSq/x SINE Alu -178 135 1 2242 98 20 0 chr4 120278227 120278533 -64010129 - AluSx SINE Alu 0 312 1 786 212 17 85 chr4 120278578 120278871 -64009791 - AluSg SINE Alu -12 298 26 6329 89 52 71 chr4 120279092 120279215 -64009447 + MER51B-int LTR ERV1 2236 2360 -5456 1980 128 7 10 chr4 120279215 120279503 -64009159 + AluSg SINE Alu 1 287 -23 6329 89 52 71 chr4 120279503 120280480 -64008182 + MER51B-int LTR ERV1 2360 3315 -4501 1737 103 9 0 chr4 120280496 120280729 -64007933 + AluSx SINE Alu 1 235 -77 341 117 17 0 chr4 120280740 120280800 -64007862 + GA-rich Low_complexity Low_complexity 4 64 0 1611 131 174 96 chr4 120280801 120281222 -64007440 + MER51B-int LTR ERV1 2841 3307 -2639 2276 102 0 0 chr4 120281222 120281526 -64007136 + AluSx SINE Alu 1 304 -8 1611 131 174 96 chr4 120281526 120281594 -64007068 + MER51B-int LTR ERV1 3307 3368 -2578 671 77 0 3 chr4 120281573 120281698 -64006964 + MER51B-int LTR ERV1 2210 2378 -2839 * 4477 18 6 0 chr4 120281699 120282207 -64006455 - L1PA3 LINE L1 0 6155 5645 3421 11 0 1 chr4 120282207 120282811 -64005851 + L1PA3 LINE L1 5032 5634 -521 1499 104 133 4 chr4 120282811 120283060 -64005602 + MER51B-int LTR ERV1 2365 2645 -2572 * 7768 173 96 64 chr4 120283059 120284152 -64004510 + MER51B-int LTR ERV1 5758 6947 -869 2207 116 0 3 chr4 120284152 120284446 -64004216 + AluSx SINE Alu 1 293 -19 7768 173 96 64 chr4 120284446 120285343 -64003319 + MER51B-int LTR ERV1 6947 7813 -3 2252 75 48 140 chr4 120285347 120285762 -64002900 + MER51B LTR ERV1 1 377 0 3220 219 181 18 chr4 120286256 120286722 -64001940 + L1MC4 LINE L1 6459 6848 -1194 1615 196 45 22 chr4 120286722 120287079 -64001583 - MLT1A1 LTR MaLR 0 365 1 3220 219 181 18 chr4 120287079 120287432 -64001230 + L1MC4 LINE L1 6848 7142 -900 1615 190 28 0 chr4 120287432 120287709 -64000953 + AluJb SINE Alu 3 290 -22 461 43 0 29 chr4 120287709 120287778 -64000884 + (CATA)n Simple_repeat Simple_repeat 2 68 0 1615 190 28 0 chr4 120287778 120287790 -64000872 + AluJb SINE Alu 290 300 -12 3220 219 181 18 chr4 120287790 120287963 -64000699 + L1MC4 LINE L1 7142 7285 -757 1782 167 13 3 chr4 120287963 120288262 -64000400 + AluJb SINE Alu 1 302 -10 3220 219 181 18 chr4 120288262 120288309 -64000353 + L1MC4 LINE L1 7285 7670 -372 364 241 0 11 chr4 120288351 120288438 -64000224 + L1MC4 LINE L1 7956 8041 -1 2197 109 7 0 chr4 120288443 120288737 -63999925 + AluSx SINE Alu 1 296 -16 2022 157 0 0 chr4 120288749 120289054 -63999608 + AluJb SINE Alu 1 305 -7 2148 123 0 10 chr4 120289148 120289456 -63999206 - AluSq SINE Alu -6 307 3 1393 153 45 21 chr4 120289484 120289726 -63998936 - MLT1D LTR MaLR 0 505 258 706 175 0 0 chr4 120290219 120290339 -63998323 - FLAM_A SINE Alu -7 135 16 760 174 15 8 chr4 120290882 120291014 -63997648 - FLAM_C SINE Alu 0 133 1 2268 129 0 0 chr4 120291297 120291600 -63997062 + AluSx SINE Alu 1 303 -9 2204 127 0 0 chr4 120292431 120292731 -63995931 + AluSx SINE Alu 1 300 -12 2165 134 0 0 chr4 120292756 120293061 -63995601 + AluSq SINE Alu 1 305 -8 2058 101 11 4 chr4 120293063 120293373 -63995289 + AluSg SINE Alu 1 312 0 2100 108 3 29 chr4 120293611 120293917 -63994745 - AluSc SINE Alu -5 304 7 1321 179 47 90 chr4 120293942 120294085 -63994577 - AluJo SINE Alu -22 290 165 2210 108 28 0 chr4 120294085 120294372 -63994290 - AluSg SINE Alu -15 295 1 1321 179 47 90 chr4 120294372 120294529 -63994133 - AluJo SINE Alu -147 165 3 450 246 125 22 chr4 120294532 120294786 -63993876 - MLT1J LTR MaLR -63 448 124 453 238 31 62 chr4 120295116 120295276 -63993386 + L1MC5 LINE L1 7761 7915 -46 1778 174 20 0 chr4 120295591 120295890 -63992772 + AluJb SINE Alu 1 305 -7 297 360 70 0 chr4 120295964 120296136 -63992526 + MIR SINE MIR 1 184 -78 2255 155 34 55 chr4 120296304 120296348 -63992314 - MSTB1 LTR MaLR -2 430 387 2231 71 4 4 chr4 120296348 120296657 -63992005 - AluY SINE Alu 0 311 3 2255 155 34 55 chr4 120296657 120297050 -63991612 - MSTB1 LTR MaLR -45 387 1 2092 135 3 3 chr4 120297058 120297355 -63991307 + AluSx SINE Alu 1 297 -15 1732 172 13 3 chr4 120297525 120297828 -63990834 - AluSx SINE Alu -6 306 1 2174 118 0 0 chr4 120298063 120298351 -63990311 + AluSg SINE Alu 1 288 -22 886 145 48 7 chr4 120298395 120298540 -63990122 - AluSg SINE Alu -159 151 1 2304 116 0 6 chr4 120298628 120298939 -63989723 - AluSx SINE Alu -1 311 3 250 290 102 11 chr4 120299175 120299351 -63989311 - L1MC5 LINE L1 -159 7802 7611 259 303 86 20 chr4 120299995 120300193 -63988469 - L1MC5 LINE L1 -448 7513 7303 * 361 270 95 20 chr4 120300162 120300310 -63988352 - L1MC4a LINE L1 -382 7426 7268 2054 112 14 0 chr4 120300654 120300954 -63987708 - AluSg SINE Alu 0 304 1 1836 128 21 24 chr4 120300962 120301116 -63987546 - AluJo SINE Alu -20 292 138 2234 101 17 0 chr4 120301116 120301404 -63987258 - AluSg SINE Alu -17 293 1 1836 128 21 24 chr4 120301404 120301538 -63987124 - AluJo SINE Alu -174 138 5 420 256 0 50 chr4 120301557 120301678 -63986984 - MIR SINE MIR -36 226 112 349 297 41 41 chr4 120301679 120301874 -63986788 + L2 LINE L2 2949 3143 -170 1816 199 97 32 chr4 120301874 120302038 -63986624 + MLT2F LTR ERVL 1 153 -510 2027 127 10 3 chr4 120302038 120302337 -63986325 + AluSx SINE Alu 1 301 -11 1816 199 97 32 chr4 120302337 120302604 -63986058 + MLT2F LTR ERVL 153 460 -203 4736 214 20 41 chr4 120302647 120302844 -63985818 + ERVL LTR ERVL 4333 4533 -1231 2341 112 0 3 chr4 120302844 120303157 -63985505 - AluSx SINE Alu 0 312 1 4736 214 20 41 chr4 120303157 120303390 -63985272 + ERVL LTR ERVL 4533 4769 -995 827 181 0 8 chr4 120303390 120303568 -63985094 + FLAM_C SINE Alu 1 133 0 4736 214 20 41 chr4 120303568 120304222 -63984440 + ERVL LTR ERVL 4769 5395 -369 1659 173 49 3 chr4 120304223 120304507 -63984155 - AluSx SINE Alu -13 299 3 25 0 0 0 chr4 120304625 120304650 -63984012 + AT_rich Low_complexity Low_complexity 1 25 0 1744 174 17 3 chr4 120304799 120305076 -63983586 + AluSq SINE Alu 1 284 -29 423 0 0 0 chr4 120305076 120305123 -63983539 + (CA)n Simple_repeat Simple_repeat 1 47 0 1744 174 17 3 chr4 120305123 120305143 -63983519 + AluSq SINE Alu 284 302 -11 2149 114 0 13 chr4 120305143 120305448 -63983214 + AluSg SINE Alu 1 302 -8 1907 149 3 36 chr4 120305610 120305918 -63982744 - AluSx SINE Alu -14 298 1 2467 83 0 10 chr4 120306125 120306438 -63982224 + AluSp SINE Alu 1 310 -3 2343 105 0 9 chr4 120306446 120306761 -63981901 + AluSx SINE Alu 1 312 0 848 139 0 0 chr4 120306848 120306963 -63981699 - AluSg/x SINE Alu -19 293 179 1706 150 34 34 chr4 120307144 120307437 -63981225 - AluJo SINE Alu -15 297 5 2011 105 43 0 chr4 120307902 120308178 -63980484 - AluY SINE Alu -23 288 1 1596 74 0 10 chr4 120308555 120308757 -63979905 - AluSg/x SINE Alu -14 296 97 181 175 75 0 chr4 120309082 120309122 -63979540 - MER5B DNA MER1_type 0 178 136 247 376 38 0 chr4 120309736 120309869 -63978793 + L3 LINE CR1 1437 1574 -3 1877 168 7 0 chr4 120310192 120310495 -63978167 - AluJo SINE Alu -6 306 2 272 261 54 0 chr4 120310687 120310779 -63977883 + L2 LINE L2 2892 2988 -284 2252 128 0 3 chr4 120311049 120311355 -63977307 - AluSq SINE Alu -8 305 1 377 277 22 29 chr4 120311723 120311860 -63976802 - MIR SINE MIR -98 164 29 2382 93 0 3 chr4 120311945 120312247 -63976415 - AluSc SINE Alu -8 301 1 1981 125 7 3 chr4 120312646 120312934 -63975728 + AluSx SINE Alu 1 289 -23 2171 95 34 3 chr4 120314816 120315110 -63973552 - AluSq SINE Alu -10 303 1 1969 144 7 0 chr4 120315129 120315413 -63973249 - AluJb SINE Alu -26 286 1 314 333 71 0 chr4 120315426 120315567 -63973095 + L2 LINE L2 2113 2263 -1051 220 268 52 41 chr4 120315728 120315825 -63972837 + L2 LINE L2 2507 2604 -710 2233 103 7 0 chr4 120315937 120316237 -63972425 + AluSx SINE Alu 1 302 -10 442 193 22 166 chr4 120316287 120316423 -63972239 - LTR49-int LTR ERV1 -3773 2558 2404 2056 83 93 4 chr4 120316423 120316701 -63971961 + AluSx SINE Alu 1 303 -9 442 193 22 166 chr4 120316701 120316745 -63971917 - LTR49-int LTR ERV1 -3927 2404 464 2087 116 10 13 chr4 120316765 120317068 -63971594 + AluSx SINE Alu 1 302 -10 658 209 19 19 chr4 120317256 120317414 -63971248 - LTR49-int LTR ERV1 -7047 490 333 694 181 29 22 chr4 120317558 120317696 -63970966 + FAM SINE Alu 21 159 -26 205 115 19 19 chr4 120317699 120317751 -63970911 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 1113 144 111 0 chr4 120317754 120317934 -63970728 - AluSg SINE Alu -110 200 1 464 234 21 64 chr4 120318055 120318196 -63970466 - LTR49-int LTR ERV1 -4280 2051 1917 1898 138 184 72 chr4 120318212 120318252 -63970410 - LTR54 LTR ERV1 0 510 476 2394 91 3 0 chr4 120318252 120318548 -63970114 - AluSx SINE Alu -12 300 4 1898 138 184 72 chr4 120318548 120318559 -63970103 - LTR54 LTR ERV1 -34 476 468 2491 60 10 0 chr4 120318559 120318859 -63969803 - AluSp SINE Alu -10 303 1 1898 138 184 72 chr4 120318859 120319262 -63969400 - LTR54 LTR ERV1 -42 468 4 693 160 20 160 chr4 120319262 120319506 -63969156 - AluJb SINE Alu -17 295 86 800 226 0 7 chr4 120319735 120319890 -63968772 + AluJb SINE Alu 129 282 -30 1804 142 45 3 chr4 120321042 120321330 -63967332 - AluJo SINE Alu -12 300 1 2264 99 0 3 chr4 120321561 120321864 -63966798 - AluSx SINE Alu -10 302 1 848 144 8 0 chr4 120321868 120321993 -63966669 - AluSq/x SINE Alu -179 133 8 337 232 0 43 chr4 120322108 120322293 -63966369 + (CAGCC)n Simple_repeat Simple_repeat 1 177 0 206 160 0 40 chr4 120322649 120322699 -63965963 + (CCG)n Simple_repeat Simple_repeat 2 49 0 21 0 0 0 chr4 120322771 120322792 -63965870 + GC_rich Low_complexity Low_complexity 1 21 0 188 229 0 0 chr4 120324036 120324071 -63964591 - L2 LINE L2 -17 3296 3262 2454 38 42 0 chr4 120324105 120324394 -63964268 - AluY SINE Alu -10 301 1 1914 103 18 15 chr4 120324437 120324710 -63963952 + AluSq SINE Alu 34 307 -6 2344 90 0 3 chr4 120324761 120325061 -63963601 - AluSg SINE Alu -11 299 1 22 56 0 0 chr4 120326187 120326223 -63962439 + AT_rich Low_complexity Low_complexity 1 36 0 545 171 36 0 chr4 120326426 120326537 -63962125 + FLAM_C SINE Alu 2 116 -27 1985 94 54 7 chr4 120326603 120326880 -63961782 + AluY SINE Alu 1 290 -21 299 157 60 60 chr4 120327791 120327874 -63960788 + L1MB8 LINE L1 6097 6181 -3 1587 238 15 48 chr4 120327919 120328264 -63960398 + L1M4 LINE L1 4834 5160 -986 1598 175 67 3 chr4 120328264 120328549 -63960113 + AluJb SINE Alu 1 303 -9 1587 238 15 48 chr4 120328549 120328683 -63959979 + L1M4 LINE L1 5160 5297 -849 1007 178 32 55 chr4 120328684 120328903 -63959759 + AluJo SINE Alu 87 300 -12 300 194 16 16 chr4 120329224 120329286 -63959376 + MER4A LTR ERV1 1 62 -602 964 169 21 58 chr4 120329286 120329530 -63959132 + MER4C LTR ERV1 273 465 0 293 319 60 26 chr4 120329718 120329834 -63958828 + L2 LINE L2 3141 3260 -12 228 86 0 0 chr4 120330066 120330101 -63958561 + (A)n Simple_repeat Simple_repeat 1 35 0 313 333 180 13 chr4 120330318 120330546 -63958116 + L2 LINE L2 2997 3262 -10 881 266 110 45 chr4 120330826 120331180 -63957482 + MER69 DNA AcHobo 123 499 -2027 2091 90 109 102 chr4 120331211 120331634 -63957028 + MSTA LTR MaLR 1 426 -2 583 159 108 41 chr4 120331645 120331838 -63956824 + MER69 DNA AcHobo 2053 2232 -294 1951 122 50 0 chr4 120331838 120332117 -63956545 + AluSx SINE Alu 1 293 -19 583 159 108 41 chr4 120332117 120332282 -63956380 + MER69 DNA AcHobo 2232 2475 -51 345 262 98 8 chr4 120333045 120333167 -63955495 + L1ME2 LINE L1 6023 6155 -9 32 0 0 0 chr4 120333828 120333860 -63954802 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr4 120334170 120334192 -63954470 + AT_rich Low_complexity Low_complexity 1 22 0 2422 90 0 0 chr4 120334532 120334842 -63953820 + AluY SINE Alu 1 310 -1 2516 57 14 0 chr4 120335200 120335496 -63953166 + AluSp SINE Alu 1 300 -13 21 0 0 0 chr4 120335505 120335526 -63953136 + AT_rich Low_complexity Low_complexity 1 21 0 532 141 0 33 chr4 120335732 120335824 -63952838 - AluSx SINE Alu -15 295 207 2797 136 162 95 chr4 120335827 120336563 -63952099 + LTR1 LTR ERV1 1 785 0 1238 146 10 24 chr4 120336568 120336773 -63951889 - AluSx SINE Alu -108 204 3 382 257 164 27 chr4 120336775 120336958 -63951704 - HAL1 LINE L1 -2290 217 10 1069 135 5 4 chr4 120337187 120337394 -63951268 + AluSp SINE Alu 1 300 -13 3034 258 102 61 chr4 120337409 120338346 -63950316 + HAL1 LINE L1 239 1136 -1371 1980 129 0 66 chr4 120338346 120338680 -63949982 + AluSx SINE Alu 1 312 0 3034 258 102 61 chr4 120338680 120338957 -63949705 + HAL1 LINE L1 1136 1400 -1107 2209 105 0 10 chr4 120338957 120339261 -63949401 + AluSx SINE Alu 4 304 -8 3034 258 102 61 chr4 120339261 120339659 -63949003 + HAL1 LINE L1 1400 1918 -589 453 200 33 0 chr4 120339665 120339755 -63948907 + AluJo SINE Alu 1 93 -219 1610 130 0 130 chr4 120339879 120340021 -63948641 + AluSx SINE Alu 11 87 -225 2848 13 0 0 chr4 120340021 120340324 -63948338 + AluYa5 SINE Alu 1 303 -8 1610 130 0 130 chr4 120340324 120340512 -63948150 + AluSx SINE Alu 87 298 -14 849 141 113 38 chr4 120341032 120341217 -63947445 + AluJo SINE Alu 90 288 -24 49 43 0 0 chr4 120341222 120341292 -63947370 + AT_rich Low_complexity Low_complexity 1 70 0 302 258 113 82 chr4 120341303 120341416 -63947246 + HAL1 LINE L1 1971 2092 -415 2210 113 0 10 chr4 120341416 120341716 -63946946 + AluSx SINE Alu 1 297 -15 302 258 113 82 chr4 120341716 120341761 -63946901 + HAL1 LINE L1 2092 2134 -373 2209 125 0 3 chr4 120341786 120342091 -63946571 + AluSx SINE Alu 1 304 -8 832 149 0 8 chr4 120342133 120342267 -63946395 - AluJb SINE Alu -179 133 1 2525 78 0 0 chr4 120342322 120342629 -63946033 + AluSg SINE Alu 1 307 -3 324 213 0 40 chr4 120342635 120342710 -63945952 + HAL1 LINE L1 2435 2506 -1 1967 150 158 13 chr4 120342838 120343212 -63945450 + MSTA LTR MaLR 1 428 0 327 302 120 41 chr4 120343482 120343724 -63944938 + MIR SINE MIR 2 262 0 21 36 0 0 chr4 120343944 120343972 -63944690 + AT_rich Low_complexity Low_complexity 1 28 0 1563 178 25 0 chr4 120344142 120344417 -63944245 + AluJo SINE Alu 1 282 -30 192 77 0 0 chr4 120345185 120345211 -63943451 + (A)n Simple_repeat Simple_repeat 1 26 0 22 35 0 0 chr4 120346079 120346108 -63942554 + AT_rich Low_complexity Low_complexity 1 29 0 1617 172 0 91 chr4 120346117 120346279 -63942383 + AluJo SINE Alu 1 119 -183 2032 45 49 0 chr4 120346279 120346524 -63942138 + AluY SINE Alu 41 297 -14 1617 172 0 91 chr4 120346524 120346692 -63941970 + AluJo SINE Alu 119 301 -1 1998 136 33 0 chr4 120346699 120347001 -63941661 + AluSx SINE Alu 1 312 0 228 306 0 0 chr4 120347125 120347187 -63941475 + L1ME LINE L1 5491 5552 -569 821 164 0 16 chr4 120347284 120347412 -63941250 + FLAM_C SINE Alu 1 126 -7 2239 107 3 3 chr4 120347578 120347877 -63940785 + AluSg SINE Alu 1 299 -11 2377 88 0 3 chr4 120348618 120348914 -63939748 - AluSx SINE Alu -17 295 1 2345 71 34 3 chr4 120349150 120349445 -63939217 - AluY SINE Alu -6 305 2 202 289 0 19 chr4 120349494 120349546 -63939116 + L2 LINE L2 3210 3260 -12 363 282 61 24 chr4 120349680 120349868 -63938794 - MIR SINE MIR -50 212 20 23 0 0 0 chr4 120349884 120349907 -63938755 + AT_rich Low_complexity Low_complexity 1 23 0 1527 179 15 7 chr4 120349909 120350182 -63938480 + AluJb SINE Alu 23 297 -15 241 269 194 0 chr4 120350520 120350587 -63938075 - MER5A DNA MER1_type -105 84 5 1934 120 29 4 chr4 120350836 120351138 -63937524 + AluSx SINE Alu 3 311 0 22 35 0 0 chr4 120351223 120351252 -63937410 + AT_rich Low_complexity Low_complexity 1 29 0 3290 71 0 24 chr4 120351262 120351687 -63936975 + L1PA6 LINE L1 5737 6151 -3 2135 80 29 29 chr4 120352192 120352503 -63936159 - AluY SINE Alu 0 311 1 802 162 0 0 chr4 120352670 120352787 -63935875 + FLAM_C SINE Alu 3 119 -24 4658 137 26 18 chr4 120352791 120353564 -63935098 + MER51-int LTR ERV1 730 2124 -3462 843 154 29 65 chr4 120353601 120353809 -63934853 + MER4A LTR ERV1 276 534 -130 2826 61 8 2 chr4 120353809 120354202 -63934460 + MER51-int LTR ERV1 1802 2196 -5620 1432 78 68 0 chr4 120354303 120354494 -63934168 - AluY SINE Alu -107 204 1 1732 169 64 36 chr4 120354500 120354737 -63933925 + L1PA15 LINE L1 5794 6046 -119 2267 84 0 14 chr4 120354737 120355034 -63933628 + AluSc SINE Alu 3 295 -14 1732 169 64 36 chr4 120355034 120355156 -63933506 + L1PA15 LINE L1 6046 6163 -2 2120 123 3 7 chr4 120355378 120355680 -63932982 - AluSx SINE Alu -11 301 1 242 234 0 0 chr4 120355699 120355746 -63932916 - MER66A LTR ERV1 -142 336 290 844 154 23 0 chr4 120355839 120355969 -63932693 + FLAM_C SINE Alu 1 133 -10 2135 130 0 13 chr4 120356692 120356992 -63931670 - AluSx SINE Alu -16 296 1 276 231 13 26 chr4 120358194 120358272 -63930390 - L1MC5 LINE L1 -48 7913 7837 2327 75 10 0 chr4 120358288 120358582 -63930080 - AluSq SINE Alu -16 297 1 252 211 0 19 chr4 120358584 120358636 -63930026 - MER66B LTR ERV1 -141 345 295 1879 150 0 14 chr4 120358823 120359116 -63929546 - AluSx SINE Alu -18 294 6 248 218 18 0 chr4 120359127 120359182 -63929480 - L1MC5 LINE L1 -396 7565 7510 1536 170 9 69 chr4 120359195 120359512 -63929150 - AluJo SINE Alu -14 298 1 904 187 0 106 chr4 120359839 120360002 -63928660 - AluJb SINE Alu -16 296 164 1783 170 11 0 chr4 120360002 120360284 -63928378 - AluJb SINE Alu -27 285 1 904 187 0 106 chr4 120360284 120360355 -63928307 - AluJb SINE Alu -148 164 87 1685 137 0 70 chr4 120360468 120360619 -63928043 + AluJb SINE Alu 2 121 -191 2397 96 0 3 chr4 120360619 120360921 -63927741 + AluSq SINE Alu 1 301 -12 1685 137 0 70 chr4 120360921 120361083 -63927579 + AluJb SINE Alu 121 293 -19 2017 118 28 3 chr4 120361867 120362155 -63926507 - AluSx SINE Alu -17 295 1 2133 103 3 0 chr4 120362357 120362649 -63926013 - AluSq SINE Alu -17 296 4 1909 156 0 26 chr4 120362798 120363100 -63925562 - AluJo SINE Alu -18 294 1 2061 125 0 0 chr4 120363718 120364005 -63924657 - AluSx SINE Alu -22 290 4 23 0 0 0 chr4 120364508 120364531 -63924131 + AT_rich Low_complexity Low_complexity 1 23 0 1728 154 4 0 chr4 120364570 120364837 -63923825 - AluSq SINE Alu -45 268 1 1964 128 10 10 chr4 120364854 120365158 -63923504 - AluSx SINE Alu -8 304 1 2261 96 24 0 chr4 120365388 120365681 -63922981 + AluSx SINE Alu 1 300 -12 1791 171 13 13 chr4 120365764 120366069 -63922593 - AluJo SINE Alu -6 306 2 2472 83 0 3 chr4 120366230 120366544 -63922118 - AluSp SINE Alu 0 313 1 1955 136 3 20 chr4 120366547 120366849 -63921813 - AluSq SINE Alu -16 297 1 2270 126 0 0 chr4 120367047 120367357 -63921305 - AluSq SINE Alu -3 310 1 2079 140 3 10 chr4 120367682 120367996 -63920666 + AluSx SINE Alu 1 312 0 1244 115 0 0 chr4 120368035 120368209 -63920453 - AluSg/x SINE Alu -13 299 126 2220 102 13 0 chr4 120368209 120368513 -63920149 - AluSp SINE Alu -5 308 1 1638 139 12 16 chr4 120371376 120371627 -63917035 + AluSx SINE Alu 55 304 -8 1868 150 102 18 chr4 120371825 120372218 -63916444 - L1MC/D LINE L1 -618 5715 5290 861 216 18 0 chr4 120372270 120372441 -63916221 + AluJb SINE Alu 122 295 -17 2028 143 13 3 chr4 120372909 120373216 -63915446 - AluSx SINE Alu -2 310 1 1200 114 17 6 chr4 120373285 120373461 -63915201 - AluSg/x SINE Alu -4 306 129 1768 208 126 47 chr4 120373525 120373729 -63914933 - L1ME2 LINE L1 -117 6047 5844 546 276 118 57 chr4 120373729 120374168 -63914494 - L1PB1 LINE L1 -325 5826 5388 274 200 121 29 chr4 120374168 120374308 -63914354 - L1MC5 LINE L1 -429 7532 5288 2235 107 13 0 chr4 120374694 120374993 -63913669 + AluSx SINE Alu 1 303 -9 1573 181 15 0 chr4 120375166 120375436 -63913226 + AluJb SINE Alu 1 274 -38 2009 144 21 0 chr4 120375750 120376041 -63912621 - AluSx SINE Alu -15 297 1 2597 162 194 134 chr4 120376685 120376726 -63911936 - L1MC3 LINE L1 0 7785 7748 2251 102 0 3 chr4 120376726 120377019 -63911643 + AluSg SINE Alu 3 294 -16 2597 162 194 134 chr4 120377019 120377312 -63911350 - L1MC3 LINE L1 -37 7748 7474 526 170 30 0 chr4 120377312 120377412 -63911250 - U13 snRNA snRNA -1 103 1 2597 162 194 134 chr4 120377412 120377659 -63911003 - L1MC3 LINE L1 -311 7474 7243 341 232 22 19 chr4 120377659 120377748 -63910914 - MLT1F1 LTR MaLR -401 148 46 2597 162 194 134 chr4 120377748 120378200 -63910462 - L1MC3 LINE L1 -542 7243 6595 4476 164 81 61 chr4 120378222 120379306 -63909356 - L1MB3 LINE L1 0 6183 5062 1969 121 0 0 chr4 120379306 120379579 -63909083 - AluSx SINE Alu -39 273 1 4476 164 81 61 chr4 120379579 120380135 -63908527 - L1MB3 LINE L1 -1121 5062 4518 335 122 0 0 chr4 120380150 120380199 -63908463 - Alu SINE Alu -249 51 3 1949 104 9 98 chr4 120380423 120380751 -63907911 - AluSq SINE Alu -14 299 1 22 35 0 0 chr4 120380841 120380870 -63907792 + AT_rich Low_complexity Low_complexity 1 29 0 1212 198 61 61 chr4 120381386 120381730 -63906932 - MER2 DNA MER2_type 0 344 1 1237 195 88 11 chr4 120381858 120382130 -63906532 + AluJo SINE Alu 1 293 -19 202 300 20 0 chr4 120383241 120383291 -63905371 - L2 LINE L2 -14 3258 3208 23 0 0 0 chr4 120384083 120384106 -63904556 + AT_rich Low_complexity Low_complexity 1 23 0 281 295 62 36 chr4 120384186 120384298 -63904364 - L2 LINE L2 0 3272 3158 241 290 84 9 chr4 120384453 120384560 -63904102 + MIR SINE MIR 28 142 -120 317 292 125 0 chr4 120384570 120384666 -63903996 + L2 LINE L2 3193 3300 -13 180 111 0 0 chr4 120384705 120384732 -63903930 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2075 69 21 52 chr4 120384734 120385022 -63903640 - AluSg SINE Alu -31 279 1 2094 127 0 38 chr4 120385623 120385939 -63902723 + AluSx SINE Alu 1 304 -8 1150 193 166 23 chr4 120385950 120386209 -63902453 + AluSg SINE Alu 5 300 0 284 217 32 4 chr4 120387537 120387611 -63901051 + MIR SINE MIR 90 171 -37 2468 134 39 24 chr4 120388125 120388536 -63900126 - L1MC1 LINE L1 -1 6332 5916 2174 112 7 0 chr4 120388762 120389056 -63899606 - AluSx SINE Alu -16 296 1 1858 126 3 63 chr4 120389948 120390265 -63898397 - AluSx SINE Alu -14 298 1 1102 82 0 0 chr4 120390265 120390400 -63898262 - AluSq/x SINE Alu -177 135 1 2236 95 20 0 chr4 120390483 120390789 -63897873 - AluSx SINE Alu 0 312 1 1440 153 32 80 chr4 120390834 120391148 -63897514 - AluSx SINE Alu -12 300 2 1927 146 0 7 chr4 120391268 120391563 -63897099 - AluJo SINE Alu -9 303 11 2331 104 0 0 chr4 120391787 120392095 -63896567 - AluSg SINE Alu -2 308 1 8024 108 14 41 chr4 120392246 120392415 -63896247 + HSMAR2 DNA Mariner 3 175 -1127 1960 167 6 6 chr4 120392415 120392726 -63895936 + AluJb SINE Alu 1 311 -1 8024 108 14 41 chr4 120392726 120393444 -63895218 + HSMAR2 DNA Mariner 175 844 -458 686 208 65 42 chr4 120393444 120393612 -63895050 - FAM SINE Alu -3 172 1 8024 108 14 41 chr4 120393612 120394059 -63894603 + HSMAR2 DNA Mariner 844 1302 0 26 30 0 0 chr4 120394413 120394446 -63894216 + AT_rich Low_complexity Low_complexity 1 33 0 445 267 85 73 chr4 120394963 120395071 -63893591 + MIR SINE MIR 13 118 -144 2116 125 3 0 chr4 120395071 120395359 -63893303 - AluSx SINE Alu -23 289 1 445 267 85 73 chr4 120395359 120395497 -63893165 + MIR SINE MIR 118 262 0 352 325 86 38 chr4 120398853 120399145 -63889517 - L2 LINE L2 0 3313 3008 25 31 0 0 chr4 120401003 120401035 -63887627 + AT_rich Low_complexity Low_complexity 1 32 0 2288 88 3 3 chr4 120401357 120401653 -63887009 - AluSg SINE Alu -14 296 1 2264 106 3 19 chr4 120402097 120402409 -63886253 + AluSg SINE Alu 1 307 -3 243 0 0 0 chr4 120402443 120402470 -63886192 + (TA)n Simple_repeat Simple_repeat 2 28 0 1745 149 61 3 chr4 120402470 120402756 -63885906 - AluJo SINE Alu -6 306 1 596 179 100 0 chr4 120402981 120403121 -63885541 - L1MA6 LINE L1 -13 6287 6134 545 221 29 0 chr4 120403120 120403260 -63885402 + L1MA4 LINE L1 6155 6298 -2 * 3574 141 40 26 chr4 120403267 120403805 -63884857 - L1MA6 LINE L1 -152 6148 5596 2106 118 3 26 chr4 120403805 120404111 -63884551 - AluSx SINE Alu -13 299 1 3574 141 40 26 chr4 120404111 120404269 -63884393 - L1MA6 LINE L1 -704 5596 5442 2456 70 3 0 chr4 120405156 120405456 -63883206 - AluSx SINE Alu -11 301 1 26 50 0 0 chr4 120406573 120406613 -63882049 + AT_rich Low_complexity Low_complexity 1 40 0 2088 144 3 0 chr4 120406729 120407027 -63881635 - AluSx SINE Alu -13 299 1 2209 83 33 20 chr4 120407075 120407375 -63881287 + AluSc SINE Alu 1 304 -5 22 0 0 0 chr4 120407462 120407484 -63881178 + AT_rich Low_complexity Low_complexity 1 22 0 1625 170 22 0 chr4 120408155 120408455 -63880207 - AluJb SINE Alu 0 306 1 767 168 8 0 chr4 120408559 120408690 -63879972 - FLAM_C SINE Alu -1 132 1 838 255 19 49 chr4 120408879 120409065 -63879597 - MIR SINE MIR -2 260 82 1909 135 11 0 chr4 120409065 120409392 -63879270 + AluSx SINE Alu 1 330 0 838 255 19 49 chr4 120409392 120409471 -63879191 - MIR SINE MIR -180 82 2 23 0 0 0 chr4 120409572 120409595 -63879067 + AT_rich Low_complexity Low_complexity 1 23 0 1682 185 44 0 chr4 120409785 120410083 -63878579 + AluSx SINE Alu 1 311 -1 275 274 71 80 chr4 120410249 120410475 -63878187 - MIR SINE MIR -38 224 1 2489 71 3 3 chr4 120410778 120411087 -63877575 + AluSp SINE Alu 1 309 -4 1962 147 0 10 chr4 120411395 120411708 -63876954 - AluSx SINE Alu -2 310 1 447 294 72 7 chr4 120411848 120412001 -63876661 - MIR SINE MIR 0 262 100 552 216 0 0 chr4 120412392 120412489 -63876173 + MER44D DNA MER2_type 1 367 -242 2209 71 0 7 chr4 120412858 120413165 -63875497 - AluY SINE Alu 0 305 1 1436 142 25 33 chr4 120413296 120413570 -63875092 + MER44D DNA MER2_type 434 705 0 1544 188 30 16 chr4 120413690 120413993 -63874669 - AluJo SINE Alu -3 309 3 25 65 0 0 chr4 120414183 120414229 -63874433 + AT_rich Low_complexity Low_complexity 1 46 0 244 245 57 0 chr4 120414277 120414330 -63874332 + L2 LINE L2 3208 3263 -9 243 0 0 0 chr4 120414986 120415013 -63873649 + (TA)n Simple_repeat Simple_repeat 2 28 0 2297 101 3 22 chr4 120415013 120415331 -63873331 - AluSx SINE Alu 0 312 1 406 200 30 10 chr4 120415618 120415718 -63872944 - L1MD3 LINE L1 -20 7975 7874 399 266 32 6 chr4 120416484 120416642 -63872020 - L1ME4a LINE L1 -16 6105 5944 2499 89 0 0 chr4 120416697 120417010 -63871652 + AluSp SINE Alu 1 313 0 410 290 33 15 chr4 120417118 120417302 -63871360 - MIR SINE MIR -6 256 2 284 273 26 0 chr4 120417369 120417446 -63871216 - MER2 DNA MER2_type -266 79 1 319 192 0 0 chr4 120417448 120417500 -63871162 + Tigger2 DNA MER2_type 1 52 -2666 29 0 0 0 chr4 120417513 120417542 -63871120 + AT_rich Low_complexity Low_complexity 1 29 0 233 179 0 0 chr4 120417542 120417581 -63871081 - Alu SINE Alu -10 292 254 1562 143 21 107 chr4 120417598 120417828 -63870834 + Tigger2 DNA MER2_type 2334 2513 -205 1799 179 14 0 chr4 120417828 120418125 -63870537 + AluJb SINE Alu 1 301 -11 1562 143 21 107 chr4 120418125 120418315 -63870347 + Tigger2 DNA MER2_type 2513 2718 0 192 77 0 0 chr4 120418330 120418356 -63870306 + (CA)n Simple_repeat Simple_repeat 2 27 0 7472 121 26 19 chr4 120418356 120419536 -63869126 + Tigger1 DNA MER2_type 10 1202 -1216 2014 161 3 0 chr4 120419536 120419847 -63868815 + AluSx SINE Alu 1 312 0 7472 121 26 19 chr4 120419847 120419909 -63868753 + Tigger1 DNA MER2_type 1202 1262 -1156 3150 109 15 55 chr4 120419900 120420319 -63868343 + Tigger1 DNA MER2_type 1899 2293 -125 * 1581 128 139 15 chr4 120420319 120420585 -63868077 - AluJb SINE Alu -13 299 1 3150 109 15 55 chr4 120420585 120420707 -63867955 + Tigger1 DNA MER2_type 2293 2418 0 276 186 0 0 chr4 120420707 120420766 -63867896 + (TG)n Simple_repeat Simple_repeat 2 60 0 22 35 0 0 chr4 120421333 120421362 -63867300 + AT_rich Low_complexity Low_complexity 1 29 0 825 170 0 0 chr4 120421523 120421658 -63867004 + FLAM_C SINE Alu 1 135 -8 2469 75 0 0 chr4 120421679 120421972 -63866690 + AluSx SINE Alu 1 293 -19 3651 136 53 50 chr4 120422057 120422249 -63866413 + L1MC1 LINE L1 5615 5805 -528 2217 75 3 78 chr4 120422249 120422571 -63866091 + AluSp SINE Alu 2 299 -14 3651 136 53 50 chr4 120422571 120423091 -63865571 + L1MC1 LINE L1 5805 6329 -4 2057 128 7 0 chr4 120423116 120423412 -63865250 + AluSx SINE Alu 4 301 -11 2279 66 0 24 chr4 120423610 120423899 -63864763 + AluSc SINE Alu 14 295 -14 657 245 23 32 chr4 120424139 120424355 -63864307 - L1ME3A LINE L1 -52 6118 5905 1996 152 0 7 chr4 120424452 120424754 -63863908 - AluSx SINE Alu -12 300 1 198 158 0 140 chr4 120425999 120426056 -63862606 + L2 LINE L2 2930 2978 -335 232 270 95 0 chr4 120426536 120426599 -63862063 - L2 LINE L2 -65 3207 3139 * 597 269 26 47 chr4 120426580 120426773 -63861889 + MIR3 SINE MIR 10 198 -10 568 182 8 8 chr4 120427199 120427320 -63861342 + Charlie1 DNA MER1_type 1517 1637 -1124 1972 166 3 0 chr4 120427323 120427624 -63861038 - AluJo SINE Alu -10 302 1 251 265 86 0 chr4 120427641 120427758 -63860904 + L2 LINE L2 2555 2681 -633 347 243 66 22 chr4 120428011 120428147 -63860515 - MIR SINE MIR -12 250 109 240 254 18 0 chr4 120428160 120428215 -63860447 + MIR SINE MIR 65 120 -88 203 321 130 15 chr4 120428340 120428471 -63860191 - MIR SINE MIR -111 151 6 601 242 27 64 chr4 120429637 120429856 -63858806 - MER20 DNA MER1_type -7 212 2 4765 119 40 18 chr4 120429935 120430256 -63858406 + L1MA5 LINE L1 5456 5768 -532 384 22 0 0 chr4 120430256 120430301 -63858361 + (CA)n Simple_repeat Simple_repeat 2 46 0 4765 119 40 18 chr4 120430301 120430605 -63858057 + L1MA5 LINE L1 5768 6106 -194 2333 75 10 3 chr4 120430605 120430900 -63857762 - AluY SINE Alu -13 298 2 4765 119 40 18 chr4 120430900 120431095 -63857567 + L1MA5 LINE L1 6106 6295 -5 668 185 0 0 chr4 120431201 120431309 -63857353 - FLAM_C SINE Alu -35 108 1 287 268 26 33 chr4 120431476 120431629 -63857033 + L1ME3A LINE L1 6019 6170 0 366 281 42 0 chr4 120431803 120431899 -63856763 - L2 LINE L2 -16 3297 3198 2242 103 3 13 chr4 120432024 120432335 -63856327 - AluSq SINE Alu -5 308 1 1778 175 3 23 chr4 120432361 120432669 -63855993 - AluJb SINE Alu -10 302 1 21 0 0 0 chr4 120432669 120432690 -63855972 + AT_rich Low_complexity Low_complexity 1 21 0 2379 101 0 0 chr4 120433681 120433988 -63854674 - AluY SINE Alu -4 307 1 1888 141 30 3 chr4 120434463 120434760 -63853902 + AluSx SINE Alu 1 305 -7 23 0 0 0 chr4 120435114 120435137 -63853525 + AT_rich Low_complexity Low_complexity 1 23 0 2213 109 0 13 chr4 120435305 120435608 -63853054 + AluSq SINE Alu 1 299 -14 419 247 0 22 chr4 120435725 120435814 -63852848 + MIR3 SINE MIR 70 156 -52 255 315 192 14 chr4 120435992 120436138 -63852524 + MER5A DNA MER1_type 18 189 0 4670 216 42 11 chr4 120436240 120437576 -63851086 + L1MB7 LINE L1 3118 4495 -1651 1100 96 0 0 chr4 120437577 120437713 -63850949 + AluSq/x SINE Alu 1 136 -177 3340 168 86 63 chr4 120437716 120438387 -63850275 + L1MB7 LINE L1 4901 5636 -548 1203 116 66 0 chr4 120438387 120438585 -63850077 + L1PA16 LINE L1 5947 6157 -9 3340 168 86 63 chr4 120438585 120439147 -63849515 + L1MB7 LINE L1 5636 6184 0 404 261 98 7 chr4 120439304 120439457 -63849205 + L1MC5 LINE L1 7725 7891 -70 767 160 11 99 chr4 120439476 120439657 -63849005 + FRAM SINE Alu 1 160 -16 1695 170 22 22 chr4 120439702 120440014 -63848648 + AluJb SINE Alu 1 312 0 231 36 0 0 chr4 120440567 120440595 -63848067 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 1214 203 25 19 chr4 120440722 120441139 -63847523 + LTR40c LTR ERVL 1 465 0 281 317 112 66 chr4 120441628 120441803 -63846859 - L2 LINE L2 -830 2484 2319 722 180 0 8 chr4 120441803 120441925 -63846737 - FLAM_A SINE Alu -12 121 1 281 317 112 66 chr4 120441925 120442115 -63846547 - L2 LINE L2 -995 2319 2102 351 190 17 43 chr4 120442226 120442412 -63846250 - MER112 DNA MER1_type -7 253 9 462 209 132 149 chr4 120442418 120442528 -63846134 + MIR SINE MIR 7 117 -145 2250 167 14 9 chr4 120442528 120442959 -63845703 - L1MD1 LINE L1 -12 6230 5798 462 209 132 149 chr4 120442959 120443083 -63845579 + MIR SINE MIR 117 237 -25 1219 133 11 0 chr4 120443133 120443313 -63845349 - AluSg/x SINE Alu -10 300 119 2112 108 14 3 chr4 120443300 120443596 -63845066 - AluSx SINE Alu -13 299 1 1297 149 181 8 chr4 120443598 120443846 -63844816 - AluSg1 SINE Alu -10 299 9 1846 110 39 18 chr4 120444414 120444695 -63843967 + AluSc SINE Alu 1 287 -22 2297 113 0 0 chr4 120444703 120445003 -63843659 + AluSq SINE Alu 1 300 -13 1652 136 85 15 chr4 120445157 120445273 -63843389 + AluJo SINE Alu 1 107 -205 234 0 0 0 chr4 120445273 120445299 -63843363 + (CATA)n Simple_repeat Simple_repeat 3 28 0 1652 136 85 15 chr4 120445299 120445478 -63843184 + AluJo SINE Alu 107 312 0 244 23 0 70 chr4 120446263 120446286 -63842376 + (TAA)n Simple_repeat Simple_repeat 2 22 -19 2054 143 0 10 chr4 120446286 120446587 -63842075 + AluSx SINE Alu 1 298 -14 244 23 0 70 chr4 120446587 120446606 -63842056 + (TAA)n Simple_repeat Simple_repeat 22 41 0 797 204 51 10 chr4 120448629 120448825 -63839837 - MER46C DNA MER2_type -114 224 21 1226 126 0 0 chr4 120449648 120449830 -63838832 - AluSg/x SINE Alu -11 301 120 756 170 30 2 chr4 120450643 120450929 -63837733 + AluJo SINE Alu 1 350 0 2376 88 0 0 chr4 120450996 120451301 -63837361 + AluY SINE Alu 1 305 -6 1875 150 0 20 chr4 120451369 120451675 -63836987 + AluJb SINE Alu 1 300 -12 2197 118 14 0 chr4 120451685 120451981 -63836681 + AluSx SINE Alu 1 300 -12 377 267 64 74 chr4 120452721 120452786 -63835876 + L1ME4a LINE L1 5724 5788 -333 2208 109 0 0 chr4 120452786 120453095 -63835567 + AluSq SINE Alu 1 309 0 377 267 64 74 chr4 120453095 120453416 -63835246 + L1ME4a LINE L1 5788 6109 -12 1783 142 6 72 chr4 120453478 120453661 -63835001 - AluJb SINE Alu -3 309 156 2230 110 0 3 chr4 120453661 120453952 -63834710 - AluSq SINE Alu -22 291 2 1783 142 6 72 chr4 120453952 120454099 -63834563 - AluJb SINE Alu -156 156 1 456 208 58 13 chr4 120455761 120455915 -63832747 - L1ME4a LINE L1 -13 6108 5948 453 296 81 32 chr4 120456010 120456318 -63832344 - L1ME4a LINE L1 -316 5805 5483 730 81 18 0 chr4 120456478 120456589 -63832073 + (TC)n Simple_repeat Simple_repeat 2 114 0 1117 123 0 0 chr4 120456589 120456739 -63831923 - AluSg/x SINE Alu -27 283 134 3714 70 4 4 chr4 120456739 120457228 -63831434 - L1PA6 LINE L1 0 6154 5666 437 296 123 19 chr4 120457740 120457792 -63830870 + Tigger8 DNA MER2_type 31 76 -590 2092 143 3 0 chr4 120457792 120458093 -63830569 + AluSx SINE Alu 1 302 -10 437 296 123 19 chr4 120458093 120458321 -63830341 + Tigger8 DNA MER2_type 76 362 -304 2261 88 14 3 chr4 120458321 120458618 -63830044 + AluSq SINE Alu 1 300 -13 437 296 123 19 chr4 120458618 120458711 -63829951 + Tigger8 DNA MER2_type 362 444 -222 460 242 118 45 chr4 120458841 120458895 -63829767 + MIR SINE MIR 46 95 -167 2082 81 39 59 chr4 120458895 120459202 -63829460 - AluSq SINE Alu -12 301 1 460 242 118 45 chr4 120459202 120459325 -63829337 + MIR SINE MIR 95 236 -26 2102 126 40 0 chr4 120459436 120459737 -63828925 + AluSq SINE Alu 1 313 0 188 108 0 27 chr4 120459889 120459926 -63828736 + (TAAAAA)n Simple_repeat Simple_repeat 6 41 0 567 275 47 52 chr4 120460018 120460107 -63828555 - MIR SINE MIR -52 210 122 2155 129 0 3 chr4 120460107 120460401 -63828261 + AluSx SINE Alu 7 299 -13 567 275 47 52 chr4 120460401 120460522 -63828140 - MIR SINE MIR -140 122 1 2224 148 4 82 chr4 120461148 120461601 -63827061 + MER47B DNA MER2_type 1 418 0 1450 53 0 0 chr4 120461856 120462026 -63826636 - AluSq SINE Alu -15 298 129 2191 90 0 0 chr4 120462026 120462304 -63826358 + AluSx SINE Alu 24 301 -11 198 103 0 0 chr4 120462599 120462628 -63826034 + (A)n Simple_repeat Simple_repeat 1 29 0 2203 75 13 36 chr4 120462987 120463294 -63825368 + AluSp SINE Alu 1 300 -13 317 365 125 28 chr4 120463342 120463775 -63824887 + L2 LINE L2 2373 2847 -467 2379 98 0 0 chr4 120464028 120464325 -63824337 + AluSp SINE Alu 1 297 -16 28 29 0 0 chr4 120465502 120465537 -63823125 + AT_rich Low_complexity Low_complexity 1 35 0 276 53 0 0 chr4 120467106 120467144 -63821518 + (CA)n Simple_repeat Simple_repeat 2 39 0 2231 83 59 0 chr4 120468338 120468627 -63820035 - AluSg1 SINE Alu -3 306 1 414 0 0 0 chr4 120468724 120468770 -63819892 + (CA)n Simple_repeat Simple_repeat 2 47 0 1598 118 0 0 chr4 120469175 120469387 -63819275 + AluSx SINE Alu 1 212 -100 1094 172 116 0 chr4 120469387 120469585 -63819077 + AluJb SINE Alu 78 298 -14 198 0 0 0 chr4 120469735 120469757 -63818905 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 204 273 65 26 chr4 120469757 120469834 -63818828 - L2 LINE L2 -13 3259 3180 2056 102 49 0 chr4 120470644 120470929 -63817733 + AluSp SINE Alu 1 299 -14 395 362 55 34 chr4 120471415 120471476 -63817186 - MIR SINE MIR -3 259 201 2580 65 0 3 chr4 120471476 120471785 -63816877 + AluY SINE Alu 1 308 -3 395 362 55 34 chr4 120471785 120471958 -63816704 - MIR SINE MIR -61 201 20 243 61 0 0 chr4 120472048 120472081 -63816581 + (CA)n Simple_repeat Simple_repeat 2 34 0 2357 115 0 3 chr4 120472783 120473097 -63815565 - AluSq SINE Alu 0 313 1 1562 127 0 0 chr4 120473213 120473434 -63815228 + AluSx SINE Alu 1 221 -91 2341 74 6 13 chr4 120473554 120473865 -63814797 - AluSc SINE Alu 0 309 1 651 180 16 0 chr4 120474642 120474764 -63813898 - FLAM_A SINE Alu -8 125 2 1412 99 0 86 chr4 120474789 120475010 -63813652 - AluSq SINE Alu -111 202 1 630 248 150 34 chr4 120475289 120475523 -63813139 - MIR SINE MIR 0 262 2 470 187 22 0 chr4 120476044 120476135 -63812527 - MER94 DNA DNA 0 134 42 2252 96 7 0 chr4 120476150 120476442 -63812220 - AluSq SINE Alu -19 294 1 1175 133 133 0 chr4 120476928 120477020 -63811642 + MER30 DNA MER1_type 1 79 -151 2354 97 0 0 chr4 120477020 120477320 -63811342 + AluSx SINE Alu 1 300 -12 1175 133 133 0 chr4 120477320 120477430 -63811232 + MER30 DNA MER1_type 79 230 0 2394 102 0 0 chr4 120477851 120478154 -63810508 + AluSx SINE Alu 7 309 -3 3350 86 0 11 chr4 120478183 120478647 -63810015 - L1PA6 LINE L1 0 6154 5696 204 349 0 0 chr4 120479823 120479886 -63808776 + L2 LINE L2 2991 3053 -219 1623 98 188 12 chr4 120479988 120480244 -63808418 + AluSg1 SINE Alu 1 301 -8 202 261 0 78 chr4 120480244 120480359 -63808303 - L2 LINE L2 -934 2380 2275 2342 112 0 0 chr4 120480576 120480881 -63807781 + AluSx SINE Alu 1 305 -7 387 251 234 11 chr4 120481204 120481379 -63807283 - MIR SINE MIR -29 233 20 2243 113 3 0 chr4 120482531 120482823 -63805839 - AluSx SINE Alu -19 293 1 1926 161 11 0 chr4 120483123 120483409 -63805253 - AluSx SINE Alu -23 289 1 246 75 25 0 chr4 120483484 120483524 -63805138 + L1MA7 LINE L1 6206 6246 -45 2060 138 0 3 chr4 120483755 120484051 -63804611 + AluSx SINE Alu 1 295 -17 291 246 48 48 chr4 120484090 120484216 -63804446 + L2 LINE L2 2838 2963 -309 23 68 0 0 chr4 120484298 120484342 -63804320 + AT_rich Low_complexity Low_complexity 1 44 0 2307 116 0 0 chr4 120484493 120484796 -63803866 + AluSx SINE Alu 1 303 -9 1096 346 89 15 chr4 120486036 120486689 -63801973 + L3 LINE CR1 457 1157 -420 573 275 189 20 chr4 120486786 120487268 -63801394 - L2 LINE L2 -65 3248 2646 26 30 0 0 chr4 120487397 120487430 -63801232 + AT_rich Low_complexity Low_complexity 1 33 0 556 185 54 88 chr4 120487552 120487638 -63801024 + L1MEc LINE L1 52 139 -6257 198 0 0 0 chr4 120487638 120487660 -63801002 + (TTA)n Simple_repeat Simple_repeat 3 24 0 1937 43 0 0 chr4 120487660 120487890 -63800772 - L1PA5 LINE L1 -18 6136 5907 556 185 54 88 chr4 120487890 120488007 -63800655 + L1MEc LINE L1 137 249 -6147 * 2041 204 48 8 chr4 120487995 120488510 -63800152 + L1M4 LINE L1 3520 4055 -2091 1256 204 45 101 chr4 120488537 120488831 -63799831 - L1ME1 LINE L1 -5 6161 5903 2301 108 3 0 chr4 120488831 120489138 -63799524 - AluSg SINE Alu -2 308 1 1256 204 45 101 chr4 120489138 120489329 -63799333 - L1ME1 LINE L1 -263 5903 5703 638 233 52 85 chr4 120489568 120489838 -63798824 - MIR SINE MIR 0 262 2 553 165 0 0 chr4 120490208 120490293 -63798369 - FRAM/FAM SINE Alu -92 84 1 1366 266 85 42 chr4 120490420 120490996 -63797666 - L2 LINE L2 -681 2633 2033 330 335 53 44 chr4 120490979 120491206 -63797456 + L3 LINE CR1 1333 1561 -16 * 429 300 106 12 chr4 120491624 120491784 -63796878 - MER5A DNA MER1_type 0 189 15 2290 104 3 0 chr4 120491925 120492223 -63796439 + AluSp SINE Alu 1 299 -14 2090 125 10 3 chr4 120493207 120493512 -63795150 - AluSx SINE Alu -5 307 1 240 161 0 107 chr4 120495248 120495304 -63793358 - Tigger5 DNA MER2_type -16 2307 2258 * 300 207 17 0 chr4 120495301 120495359 -63793303 + Tigger5 DNA MER2_type 2262 2320 -3 * 525 152 0 0 chr4 120495359 120495437 -63793225 - Tigger5 DNA MER2_type -2245 78 1 692 296 66 4 chr4 120495444 120495687 -63792975 - MIR SINE MIR -3 259 2 278 163 0 0 chr4 120495782 120495825 -63792837 - L2 LINE L2 -8 3305 3263 2287 94 0 0 chr4 120496599 120496916 -63791746 - AluSg SINE Alu 0 317 1 2191 119 0 3 chr4 120497151 120497454 -63791208 - AluY SINE Alu -9 302 1 1970 127 13 32 chr4 120497672 120497986 -63790676 - AluSx SINE Alu -4 308 1 266 232 108 0 chr4 120498433 120498512 -63790150 + MIR SINE MIR 68 149 -64 540 233 228 16 chr4 120499104 120499293 -63789369 + MIR SINE MIR 23 251 -11 1988 156 3 0 chr4 120499963 120500271 -63788391 + AluSp SINE Alu 1 309 -4 910 116 0 39 chr4 120502027 120502156 -63786506 + FLAM_C SINE Alu 1 124 -9 2424 84 3 6 chr4 120502194 120502505 -63786157 - AluSx SINE Alu -2 310 1 32 0 0 0 chr4 120502519 120502551 -63786111 + AT_rich Low_complexity Low_complexity 1 32 0 2481 87 3 0 chr4 120502588 120502897 -63785765 - AluSp SINE Alu -3 310 1 312 264 28 9 chr4 120502978 120503084 -63785578 + (TA)n Simple_repeat Simple_repeat 2 109 0 1467 174 10 54 chr4 120504220 120504514 -63784148 - AluJb SINE Alu -22 290 10 1666 126 65 17 chr4 120504825 120505119 -63783543 + AluSx SINE Alu 1 308 -4 877 212 6 6 chr4 120505144 120505309 -63783353 - FRAM SINE Alu -11 165 1 2078 96 46 0 chr4 120505742 120506022 -63782640 + AluSx SINE Alu 3 295 -17 21 0 0 0 chr4 120507914 120507935 -63780727 + GC_rich Low_complexity Low_complexity 1 21 0 198 103 0 0 chr4 120507998 120508027 -63780635 + (CCG)n Simple_repeat Simple_repeat 3 31 0 25 31 0 0 chr4 120508189 120508221 -63780441 + GC_rich Low_complexity Low_complexity 1 32 0 213 152 43 0 chr4 120508424 120508470 -63780192 + (CCG)n Simple_repeat Simple_repeat 2 49 0 2168 97 7 7 chr4 120509848 120510138 -63778524 + AluSq SINE Alu 1 290 -23 709 146 10 0 chr4 120510162 120510265 -63778397 + U6 snRNA snRNA 1 104 -3 4488 60 6 2 chr4 120510494 120511032 -63777630 + L1PA7 LINE L1 5615 6154 0 737 135 29 0 chr4 120511427 120511531 -63777131 - U6 snRNA snRNA 0 107 1 940 118 105 7 chr4 120512014 120512167 -63776495 + AluSg/x SINE Alu 135 302 -8 21 36 0 0 chr4 120512194 120512222 -63776440 + AT_rich Low_complexity Low_complexity 1 28 0 835 129 0 50 chr4 120512286 120512425 -63776237 + AluSq/x SINE Alu 1 132 -180 370 94 0 0 chr4 120512470 120512523 -63776139 + Alu SINE Alu 1 53 -250 656 135 19 39 chr4 120512663 120512767 -63775895 + AluSx SINE Alu 1 102 -211 1721 89 0 9 chr4 120512782 120513006 -63775656 + AluSx SINE Alu 88 309 -3 28 29 0 0 chr4 120513341 120513376 -63775286 + AT_rich Low_complexity Low_complexity 1 35 0 2410 82 3 7 chr4 120513376 120513680 -63774982 + AluSx SINE Alu 1 303 -9 270 207 0 0 chr4 120513680 120513738 -63774924 + (CATATA)n Simple_repeat Simple_repeat 5 62 0 306 194 9 102 chr4 120513739 120513847 -63774815 - L1MC4 LINE L1 -1337 6705 6608 576 153 0 45 chr4 120514158 120514269 -63774393 - FLAM_A SINE Alu -1 141 36 321 210 0 0 chr4 120514580 120514642 -63774020 - AluSg/x SINE Alu -117 183 122 2222 83 0 21 chr4 120514654 120514944 -63773718 + AluSg SINE Alu 1 284 -26 2232 135 0 0 chr4 120515021 120515332 -63773330 - AluSq SINE Alu -2 311 1 329 345 45 53 chr4 120515336 120515692 -63772970 + L2 LINE L2 2578 2930 -384 1823 150 35 0 chr4 120515937 120516223 -63772439 - AluJb SINE Alu -16 296 1 491 223 115 0 chr4 120516303 120516460 -63772202 + HsTC2 DNA Tc2 1605 1779 -119 2308 96 0 0 chr4 120516598 120516889 -63771773 - AluSc SINE Alu -16 293 3 414 339 33 6 chr4 120517127 120517310 -63771352 + MER5A DNA MER1_type 1 188 -1 2240 101 3 0 chr4 120517316 120517623 -63771039 + AluY SINE Alu 1 308 -3 1344 191 66 11 chr4 120517676 120517948 -63770714 - AluJo SINE Alu -25 287 1 2534 75 3 0 chr4 120517955 120518262 -63770400 - AluSp SINE Alu -5 308 1 497 231 191 31 chr4 120518287 120518512 -63770150 - MIR SINE MIR 0 262 2 2511 68 7 3 chr4 120518514 120518823 -63769839 - AluSp SINE Alu -3 310 1 1642 158 68 0 chr4 120519122 120519400 -63769262 - AluSx SINE Alu -15 297 1 2180 102 6 26 chr4 120519483 120519796 -63768866 - AluSg SINE Alu -3 307 1 207 226 177 0 chr4 120520230 120520292 -63768370 - MIR SINE MIR -70 138 66 207 204 23 0 chr4 120520555 120520599 -63768063 + L2 LINE L2 3220 3264 -8 2161 120 0 0 chr4 120520624 120520935 -63767727 + AluSx SINE Alu 1 311 0 982 153 0 0 chr4 120520988 120521145 -63767517 + AluSg/x SINE Alu 152 308 -1 21 57 0 0 chr4 120521308 120521343 -63767319 + AT_rich Low_complexity Low_complexity 1 35 0 727 230 120 0 chr4 120521357 120521548 -63767114 + MIR SINE MIR 28 241 -21 321 301 290 0 chr4 120521637 120521823 -63766839 + MIR SINE MIR 13 252 -10 180 257 0 0 chr4 120521832 120521867 -63766795 + L2 LINE L2 3194 3228 -44 961 82 30 0 chr4 120522011 120522146 -63766516 + L1PA4 LINE L1 6017 6155 0 2317 88 0 10 chr4 120522169 120522475 -63766187 + AluSx SINE Alu 1 303 -9 26 30 0 0 chr4 120523065 120523098 -63765564 + AT_rich Low_complexity Low_complexity 1 33 0 213 154 0 0 chr4 120524115 120524154 -63764508 + CT-rich Low_complexity Low_complexity 3 41 0 234 246 0 0 chr4 120524291 120524348 -63764314 + CT-rich Low_complexity Low_complexity 1 57 0 192 97 0 0 chr4 120524364 120524395 -63764267 + (TCC)n Simple_repeat Simple_repeat 2 32 0 2069 102 0 7 chr4 120525620 120525928 -63762734 + AluSx SINE Alu 1 306 0 351 349 6 30 chr4 120526063 120526299 -63762363 + GA-rich Low_complexity Low_complexity 1 230 0 237 132 0 0 chr4 120526304 120526342 -63762320 + (GGGAGA)n Simple_repeat Simple_repeat 3 40 0 42 0 0 0 chr4 120526397 120526439 -63762223 + GC_rich Low_complexity Low_complexity 1 42 0 2311 109 0 0 chr4 120526634 120526936 -63761726 - AluSg SINE Alu -8 302 1 1848 133 48 10 chr4 120527813 120528107 -63760555 - AluJo SINE Alu -7 305 1 376 260 85 35 chr4 120528544 120528744 -63759918 + MIR SINE MIR 53 262 0 2412 72 7 10 chr4 120528931 120529236 -63759426 + AluSq SINE Alu 1 304 -9 427 358 0 8 chr4 120529278 120529412 -63759250 + L2 LINE L2 2932 3064 -208 2085 114 0 17 chr4 120529718 120530035 -63758627 - AluSx SINE Alu 0 312 1 2277 128 0 0 chr4 120530035 120530347 -63758315 - AluSx SINE Alu 0 312 1 439 178 103 108 chr4 120530364 120530549 -63758113 + MIR SINE MIR 59 242 -20 276 343 73 0 chr4 120530598 120530735 -63757927 - L2 LINE L2 0 3313 3167 297 258 21 21 chr4 120530985 120531082 -63757580 + MIR SINE MIR 166 262 0 432 335 135 21 chr4 120531104 120531534 -63757128 - L2 LINE L2 -397 2917 2439 349 268 21 10 chr4 120531708 120531805 -63756857 + MIR SINE MIR 57 154 -108 242 355 145 16 chr4 120531821 120531945 -63756717 - L2 LINE L2 -17 3255 3116 816 258 134 24 chr4 120534697 120534988 -63753674 + L2 LINE L2 2990 3312 -1 334 206 0 0 chr4 120535332 120535395 -63753267 - MIR SINE MIR -17 245 183 970 258 242 8 chr4 120535530 120535906 -63752756 + LTR16B LTR ERVL 1 464 0 215 301 150 23 chr4 120535961 120536094 -63752568 - MIR SINE MIR -45 217 68 2338 92 0 7 chr4 120536789 120537095 -63751567 - AluSp SINE Alu -8 305 2 644 243 17 33 chr4 120537100 120537281 -63751381 - MER5A DNA MER1_type 0 189 12 490 317 55 20 chr4 120537338 120537540 -63751122 - MIR SINE MIR -53 209 1 334 277 142 20 chr4 120537550 120537698 -63750964 + L1ME LINE L1 5608 5773 -348 2416 76 0 0 chr4 120537830 120538134 -63750528 + AluY SINE Alu 1 304 -7 24 96 0 0 chr4 120538243 120538316 -63750346 + AT_rich Low_complexity Low_complexity 1 73 0 1937 143 7 0 chr4 120538531 120538840 -63749822 + AluSx SINE Alu 1 311 0 252 345 0 0 chr4 120539210 120539294 -63749368 + MER5A DNA MER1_type 20 103 -86 2432 86 0 6 chr4 120539472 120539786 -63748876 - AluSx SINE Alu 0 312 1 2291 99 3 6 chr4 120540104 120540418 -63748244 + AluSp SINE Alu 1 313 0 2128 78 82 0 chr4 120540430 120540712 -63747950 + AluSc SINE Alu 1 305 -4 2139 137 3 6 chr4 120542138 120542451 -63746211 + AluSx SINE Alu 1 312 0 279 206 0 59 chr4 120542911 120542979 -63745683 + MIR3 SINE MIR 135 198 -10 227 239 0 0 chr4 120543110 120543156 -63745506 - L2 LINE L2 -17 3296 3251 2132 101 7 7 chr4 120547946 120548271 -63740391 + AluSc SINE Alu 20 344 0 242 349 240 10 chr4 120548275 120548688 -63739974 + L2 LINE L2 2185 2692 -622 492 246 142 22 chr4 120548799 120549031 -63739631 + MIR SINE MIR 2 261 -1 256 330 100 56 chr4 120549055 120549325 -63739337 + L2 LINE L2 2808 3089 -183 1598 172 52 0 chr4 120549721 120549989 -63738673 - AluJo SINE Alu -25 287 6 2145 128 0 3 chr4 120550003 120550308 -63738354 - AluSx SINE Alu -8 304 1 2150 129 3 22 chr4 120550519 120550836 -63737826 + AluSx SINE Alu 2 312 0 419 252 10 0 chr4 120550846 120550949 -63737713 - L2 LINE L2 -553 2761 2658 199 189 38 57 chr4 120550980 120551033 -63737629 - L3 LINE CR1 -9 1568 1517 567 132 47 28 chr4 120551033 120551139 -63737523 - AluJb SINE Alu -22 290 183 240 35 0 0 chr4 120551139 120551168 -63737494 + (A)n Simple_repeat Simple_repeat 1 29 0 268 374 48 21 chr4 120551365 120551552 -63737110 + MIR3 SINE MIR 6 197 -11 23 33 0 0 chr4 120552753 120552783 -63735879 + AT_rich Low_complexity Low_complexity 1 30 0 2311 102 0 0 chr4 120552832 120553127 -63735535 - AluSx SINE Alu -16 296 2 1073 90 8 0 chr4 120553128 120553262 -63735400 - AluSq/x SINE Alu -177 135 1 28 48 0 0 chr4 120553645 120553687 -63734975 + AT_rich Low_complexity Low_complexity 1 42 0 677 276 57 13 chr4 120553934 120554173 -63734489 - MIR SINE MIR 0 262 18 2443 90 0 0 chr4 120554220 120554520 -63734142 - AluSx SINE Alu -12 300 1 416 328 100 7 chr4 120554640 120554825 -63733837 - MIR3 SINE MIR -3 205 1 263 311 0 0 chr4 120555679 120555769 -63732893 + A-rich Low_complexity Low_complexity 1 90 0 28 61 0 0 chr4 120555892 120555941 -63732721 + AT_rich Low_complexity Low_complexity 1 49 0 426 114 0 0 chr4 120558174 120558244 -63730418 + (GA)n Simple_repeat Simple_repeat 1 70 0 2273 98 3 0 chr4 120558574 120558870 -63729792 + AluSx SINE Alu 1 297 -15 207 270 45 56 chr4 120559762 120559851 -63728811 + MIR3 SINE MIR 120 207 -1 23 0 0 0 chr4 120560670 120560693 -63727969 + AT_rich Low_complexity Low_complexity 1 23 0 24 67 0 0 chr4 120561235 120561280 -63727382 + AT_rich Low_complexity Low_complexity 1 45 0 1126 138 0 0 chr4 120562420 120562580 -63726082 - AluSg/x SINE Alu -16 296 137 274 286 105 0 chr4 120563038 120563143 -63725519 + MIR SINE MIR 88 203 -59 1131 147 14 60 chr4 120563143 120563361 -63725301 + AluJo SINE Alu 87 294 -18 426 291 61 27 chr4 120563889 120564029 -63724633 + MIR SINE MIR 30 183 -79 1914 86 0 0 chr4 120564029 120564273 -63724389 + AluSg SINE Alu 55 298 -12 426 291 61 27 chr4 120564273 120564356 -63724306 + MIR SINE MIR 183 262 0 2515 86 0 6 chr4 120564532 120564884 -63723778 + AluSq SINE Alu 1 350 0 191 261 43 0 chr4 120565157 120565203 -63723459 + MIR SINE MIR 194 241 -21 1436 198 28 90 chr4 120565789 120566254 -63722408 + MER67D LTR ERV1 1 436 -78 1932 146 3 32 chr4 120566380 120566695 -63721967 - AluJo SINE Alu -6 306 1 762 170 20 7 chr4 120566695 120566842 -63721820 + L1M2 LINE L1 5460 5608 -704 2153 132 0 3 chr4 120566878 120567182 -63721480 + AluSx SINE Alu 1 303 -9 22 35 0 0 chr4 120567182 120567211 -63721451 + AT_rich Low_complexity Low_complexity 1 29 0 373 254 87 0 chr4 120567349 120567487 -63721175 + MER103 DNA DNA 11 160 -6 189 0 0 0 chr4 120567758 120567779 -63720883 + (T)n Simple_repeat Simple_repeat 1 21 0 247 180 49 16 chr4 120567944 120568005 -63720657 + L2 LINE L2 3210 3272 0 243 146 0 0 chr4 120569109 120569150 -63719512 + (TA)n Simple_repeat Simple_repeat 2 42 0 183 297 0 47 chr4 120569683 120569747 -63718915 - L2 LINE L2 -2 3311 3251 948 308 103 31 chr4 120569937 120570645 -63718017 - L2 LINE L2 0 3313 2555 864 215 35 12 chr4 120570702 120570914 -63717748 + MER20 DNA MER1_type 1 214 -5 1827 275 126 65 chr4 120570976 120571315 -63717347 - L2 LINE L2 -768 2546 2229 2448 80 0 3 chr4 120571315 120571617 -63717045 + AluSx SINE Alu 1 301 -11 1827 275 126 65 chr4 120571617 120572423 -63716239 - L2 LINE L2 -1085 2229 1332 421 280 110 115 chr4 120572683 120573494 -63715168 + L2 LINE L2 1358 2164 -1150 270 246 14 14 chr4 120573526 120573595 -63715067 + L2 LINE L2 3245 3313 0 559 198 0 9 chr4 120574390 120574501 -63714161 - Tigger7 DNA MER2_type 0 2491 2382 1215 211 4 0 chr4 120574514 120574742 -63713920 - Tigger7 DNA MER2_type -2257 230 2 1309 195 50 27 chr4 120575007 120575268 -63713394 + AluJo SINE Alu 1 267 -45 1993 212 126 27 chr4 120575295 120575955 -63712707 - MER50 LTR ERV1 0 734 10 1664 156 33 30 chr4 120576972 120577274 -63711388 + AluJb SINE Alu 1 303 -9 229 338 32 45 chr4 120577844 120578001 -63710661 - L2 LINE L2 -186 3086 2932 24 0 0 0 chr4 120579297 120579321 -63709341 + AT_rich Low_complexity Low_complexity 1 24 0 235 233 0 33 chr4 120579774 120579834 -63708828 - AluS SINE Alu -238 62 5 37 69 0 0 chr4 120580019 120580091 -63708571 + AT_rich Low_complexity Low_complexity 1 72 0 2395 101 0 0 chr4 120580181 120580489 -63708173 - AluSc SINE Alu -1 308 1 1132 119 6 0 chr4 120580869 120581037 -63707625 - L1PB1 LINE L1 -2 6149 5981 2071 166 35 31 chr4 120581037 120581586 -63707076 + MLT2A2 LTR ERVL 1 554 0 4224 151 25 27 chr4 120581586 120583068 -63705594 - L1PB1 LINE L1 -166 5985 4516 2217 111 7 0 chr4 120584021 120584318 -63704344 - AluSx SINE Alu -13 299 1 381 162 0 0 chr4 120584870 120584938 -63703724 + (TCCA)n Simple_repeat Simple_repeat 2 69 0 369 347 13 20 chr4 120584939 120585089 -63703573 - L2 LINE L2 -1 3271 3123 302 315 138 30 chr4 120585370 120585498 -63703164 - L2 LINE L2 -221 3051 2892 2091 100 28 3 chr4 120585498 120585787 -63702875 + AluSc SINE Alu 1 296 -13 302 315 138 30 chr4 120585787 120585861 -63702801 - L2 LINE L2 -380 2892 2827 21 0 0 0 chr4 120586071 120586092 -63702570 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr4 120586483 120586515 -63702147 + AT_rich Low_complexity Low_complexity 1 32 0 180 0 0 0 chr4 120586819 120586839 -63701823 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 234 323 121 8 chr4 120587004 120587128 -63701534 + L2 LINE L2 2222 2359 -955 2053 200 37 24 chr4 120587549 120588010 -63700652 + MLT1C LTR MaLR 1 467 0 27 0 0 0 chr4 120589044 120589071 -63699591 + AT_rich Low_complexity Low_complexity 1 27 0 1511 196 0 67 chr4 120589071 120589383 -63699279 - AluJb SINE Alu -21 291 1 290 225 178 8 chr4 120590161 120590290 -63698372 + Charlie7 DNA MER1_type 7 157 -2455 808 97 8 0 chr4 120590445 120590569 -63698093 + LTR26 LTR ERV1 8 132 -471 2157 124 0 7 chr4 120590569 120590876 -63697786 - AluSg SINE Alu -5 305 1 233 340 64 49 chr4 120591046 120591249 -63697413 - LTR16A LTR ERVL -221 229 24 223 304 0 38 chr4 120592164 120592243 -63696419 - L2 LINE L2 -1 3312 3237 2085 70 0 0 chr4 120592716 120592987 -63695675 - L1PA7 LINE L1 0 6154 5884 421 237 69 8 chr4 120593480 120593611 -63695051 + MLT1J2 LTR MaLR 30 168 -282 447 294 49 0 chr4 120593645 120593788 -63694874 - L2 LINE L2 -288 3025 2876 1262 175 84 142 chr4 120593913 120594426 -63694236 + MLT1D LTR MaLR 23 505 0 305 209 0 0 chr4 120594633 120594700 -63693962 + MLT2B3 LTR ERVL 1 67 -487 741 142 31 0 chr4 120594701 120594828 -63693834 - MER61D LTR ERV1 0 501 371 7079 146 25 60 chr4 120594828 120595868 -63692794 + ERVL-B3 LTR ERVL 4444 5427 -337 273 119 0 0 chr4 120595868 120595910 -63692752 + (TA)n Simple_repeat Simple_repeat 2 43 0 7079 146 25 60 chr4 120595910 120596230 -63692432 + ERVL-B3 LTR ERVL 5427 5757 -7 2229 223 36 47 chr4 120596230 120596782 -63691880 + MLT2B3 LTR ERVL 1 546 -8 206 109 16 47 chr4 120596782 120596846 -63691816 + (TA)n Simple_repeat Simple_repeat 1 62 0 1677 274 45 34 chr4 120596858 120597146 -63691516 - L1MC4a LINE L1 -1839 5969 5686 222 37 0 0 chr4 120597146 120597173 -63691489 + (TA)n Simple_repeat Simple_repeat 1 27 0 1677 274 45 34 chr4 120597173 120597530 -63691132 - L1MC4a LINE L1 -2122 5686 5317 1147 156 20 22 chr4 120597919 120598256 -63690406 - MLT2A2 LTR ERVL -2 451 214 579 349 33 14 chr4 120598710 120598985 -63689677 - LTR16B LTR ERVL -53 411 132 270 313 50 20 chr4 120599139 120599238 -63689424 - MIR SINE MIR -64 144 43 21 0 0 0 chr4 120599874 120599895 -63688767 + AT_rich Low_complexity Low_complexity 1 21 0 239 244 174 0 chr4 120600952 120601038 -63687624 - MER69 DNA AcHobo -19 2507 2407 255 62 0 0 chr4 120601041 120601073 -63687589 - U3 snRNA snRNA -185 32 1 577 189 33 26 chr4 120601073 120601226 -63687436 - MER69 DNA AcHobo -106 2420 2267 * 1725 241 83 27 chr4 120601204 120601652 -63687010 - MER69 DNA AcHobo -1979 547 75 258 176 35 0 chr4 120601810 120601895 -63686767 + (TA)n Simple_repeat Simple_repeat 2 89 0 348 253 147 32 chr4 120602450 120602545 -63686117 + L2 LINE L2 3167 3272 0 206 246 105 0 chr4 120602972 120603029 -63685633 + L2 LINE L2 3193 3255 -58 328 256 0 0 chr4 120603030 120603108 -63685554 + L1MC3 LINE L1 7696 7773 -12 465 82 0 0 chr4 120603382 120603443 -63685219 - Alu SINE Alu -17 293 233 277 300 36 36 chr4 120603564 120603704 -63684958 - MIR SINE MIR -54 208 69 2436 77 0 3 chr4 120604099 120604411 -63684251 - AluY SINE Alu 0 311 1 7133 46 7 4 chr4 120605667 120607370 -63681292 - L1PA7 LINE L1 0 6154 4445 1797 151 71 12 chr4 120607380 120607704 -63680958 + LTR3b LTR ERVK 158 500 0 583 206 82 96 chr4 120607968 120608187 -63680475 + HERVK3 LTR ERVK 57 272 -6971 322 320 19 0 chr4 120608239 120608342 -63680320 + HERVK3 LTR ERVK 576 680 -6563 * 4754 213 37 2 chr4 120608330 120609286 -63679376 + HERVK3 LTR ERVK 1321 2309 -4934 541 121 17 112 chr4 120609315 120609431 -63679231 + HERVK3 LTR ERVK 3058 5286 -659 872 173 46 6 chr4 120609431 120609604 -63679058 + LTR3b LTR ERVK 321 500 0 4677 79 15 8 chr4 120609604 120610260 -63678402 - L1P3 LINE L1 -1695 4766 4106 * 15603 116 12 17 chr4 120610252 120613373 -63675289 - L1P3 LINE L1 -2925 3536 410 207 0 0 0 chr4 120613373 120613396 -63675266 + (CAA)n Simple_repeat Simple_repeat 2 24 0 15603 116 12 17 chr4 120613396 120613805 -63674857 - L1P3 LINE L1 -6051 410 1 351 224 129 57 chr4 120613827 120614090 -63674572 + L1ME4a LINE L1 5756 6037 -84 2046 120 3 41 chr4 120614092 120614408 -63674254 - AluSx SINE Alu -8 304 1 1462 141 95 3 chr4 120614544 120614827 -63673835 + L1MA8 LINE L1 5977 6285 -6 260 337 30 10 chr4 120615726 120615827 -63672835 + L1MEd LINE L1 524 626 -5493 2108 128 10 0 chr4 120616032 120616330 -63672332 - AluSx SINE Alu -11 301 1 250 212 51 95 chr4 120616382 120616519 -63672143 + L1MEd LINE L1 895 1025 -5094 272 207 0 37 chr4 120616554 120616636 -63672026 + (TA)n Simple_repeat Simple_repeat 1 79 0 2071 142 28 86 chr4 120617689 120618154 -63670508 - L1MC2 LINE L1 -1 6343 5906 241 135 0 0 chr4 120618154 120618191 -63670471 - Alu SINE Alu -183 119 83 1383 156 80 34 chr4 120618191 120618454 -63670208 - AluJo SINE Alu -24 288 14 2674 203 97 7 chr4 120618460 120619766 -63668896 - L1MC2 LINE L1 -437 5907 4478 1304 172 39 21 chr4 120619841 120620154 -63668508 + MER33 DNA MER1_type 1 316 -8 1310 203 45 14 chr4 120620835 120621000 -63667662 - MER69 DNA AcHobo -60 2466 2308 1657 182 21 0 chr4 120621000 120621291 -63667371 - AluJb SINE Alu -15 297 1 1310 203 45 14 chr4 120621291 120621479 -63667183 - MER69 DNA AcHobo -218 2308 2102 237 346 39 24 chr4 120621490 120621617 -63667045 + MIR SINE MIR 48 176 -86 1175 146 75 71 chr4 120621628 120621854 -63666808 + MER33 DNA MER1_type 1 230 -2355 2226 122 0 7 chr4 120621854 120622150 -63666512 + AluSx SINE Alu 1 294 -18 1175 146 75 71 chr4 120622150 120622245 -63666417 + MER33 DNA MER1_type 230 323 -1 2496 255 60 36 chr4 120622537 120623333 -63665329 + MER69 DNA AcHobo 1 815 -411 763 219 57 94 chr4 120623415 120623821 -63664841 + Charlie1b DNA MER1_type 7 397 -126 347 241 28 28 chr4 120623818 120623926 -63664736 - Charlie2 DNA MER1_type -861 2001 1894 * 279 333 20 0 chr4 120623945 120624043 -63664619 - Charlie2 DNA MER1_type -2458 324 225 7705 108 27 46 chr4 120624043 120624667 -63663995 + HSMAR2 DNA Mariner 2 637 -665 7362 40 14 0 chr4 120624667 120625710 -63662952 - L1PA5 LINE L1 0 6154 5110 7705 108 27 46 chr4 120625710 120626279 -63662383 + HSMAR2 DNA Mariner 637 1216 -86 2143 125 7 0 chr4 120626279 120626574 -63662088 - AluSx SINE Alu -12 300 4 7705 108 27 46 chr4 120626574 120626610 -63662052 + HSMAR2 DNA Mariner 1216 1210 -92 1501 141 23 11 chr4 120626610 120626873 -63661789 - L1MA5A LINE L1 0 6297 6032 7705 108 27 46 chr4 120626873 120626916 -63661746 + HSMAR2 DNA Mariner 1209 1251 -51 329 50 0 0 chr4 120626956 120626996 -63661666 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1585 110 118 4 chr4 120626998 120627235 -63661427 - AluSg SINE Alu -30 280 17 809 125 125 0 chr4 120627235 120627363 -63661299 - AluSg SINE Alu -166 144 1 237 122 0 0 chr4 120627372 120627413 -63661249 + HSMAR2 DNA Mariner 1261 1301 -1 656 197 166 10 chr4 120627413 120627606 -63661056 - Charlie2 DNA MER1_type -2554 228 6 1793 170 0 23 chr4 120627841 120628141 -63660521 - AluJb SINE Alu -16 296 4 208 286 0 0 chr4 120628153 120628209 -63660453 - MIR SINE MIR -109 153 98 1160 224 37 4 chr4 120628222 120628463 -63660199 - AluJo SINE Alu -25 287 39 225 260 62 21 chr4 120629896 120629992 -63658670 + MER117 DNA MER1_type 50 149 -48 930 145 0 0 chr4 120630102 120630240 -63658422 + AluJo SINE Alu 1 138 -174 2089 129 3 0 chr4 120630246 120630541 -63658121 + AluSx SINE Alu 1 296 -16 348 282 27 18 chr4 120631496 120631606 -63657056 - MER5A DNA MER1_type -78 111 1 198 0 0 0 chr4 120631810 120631832 -63656830 + (TG)n Simple_repeat Simple_repeat 1 22 0 238 222 32 16 chr4 120631832 120631895 -63656767 - MER112 DNA MER1_type -195 65 2 299 318 97 20 chr4 120631920 120632115 -63656547 + MIR SINE MIR 49 258 -4 2090 121 0 3 chr4 120633396 120633685 -63654977 - AluSg SINE Alu -22 288 1 879 234 44 13 chr4 120634810 120635036 -63653626 - MIR SINE MIR -2 260 28 493 267 105 19 chr4 120635535 120635801 -63652861 + L1ME4a LINE L1 5616 5904 -217 501 230 0 68 chr4 120635813 120636004 -63652658 + L1ME4a LINE L1 5939 6116 -5 1824 155 7 16 chr4 120636131 120636440 -63652222 - AluJb SINE Alu -6 306 1 474 194 10 10 chr4 120638281 120638379 -63650283 + MER69 DNA AcHobo 1 98 -1128 599 219 33 0 chr4 120638384 120638535 -63650127 + MER69 DNA AcHobo 2349 2504 -22 306 239 140 18 chr4 120639827 120639932 -63648730 - MIR SINE MIR -47 161 50 1617 127 0 18 chr4 120640131 120640360 -63648302 + AluSx SINE Alu 1 225 -87 1022 195 0 5 chr4 120640724 120640919 -63647743 + AluSx SINE Alu 30 223 -89 216 0 0 0 chr4 120640940 120640964 -63647698 + (A)n Simple_repeat Simple_repeat 1 24 0 194 241 17 17 chr4 120640964 120641022 -63647640 + MIR3 SINE MIR 138 195 -13 193 98 49 0 chr4 120641022 120641063 -63647599 + (TA)n Simple_repeat Simple_repeat 1 43 0 962 262 63 80 chr4 120641083 120641202 -63647460 + L2 LINE L2 2653 2772 -541 2108 138 6 3 chr4 120641202 120641513 -63647149 - AluSx SINE Alu 0 312 1 962 262 63 80 chr4 120641513 120642067 -63646595 + L2 LINE L2 2772 3312 -1 288 0 0 0 chr4 120642664 120642696 -63645966 + (CA)n Simple_repeat Simple_repeat 2 33 0 23 86 0 0 chr4 120642809 120642867 -63645795 + AT_rich Low_complexity Low_complexity 1 58 0 34 24 0 0 chr4 120642882 120642923 -63645739 + AT_rich Low_complexity Low_complexity 1 41 0 433 291 8 8 chr4 120642935 120643052 -63645610 + L2 LINE L2 3197 3313 0 354 339 170 18 chr4 120644398 120644681 -63643981 - L1MC4a LINE L1 -1888 5920 5595 24 0 0 0 chr4 120846074 120846098 -63442564 + AT_rich Low_complexity Low_complexity 1 24 0 205 179 0 0 chr4 120846480 120846519 -63442143 + (TG)n Simple_repeat Simple_repeat 1 39 0 870 186 19 6 chr4 120846693 120846854 -63441808 - FAM SINE Alu -12 163 1 975 360 31 31 chr4 120847281 120848059 -63440603 - L2 LINE L2 -208 3064 2292 1313 122 16 0 chr4 120848076 120848264 -63440398 + AluSx SINE Alu 23 213 -99 491 329 7 46 chr4 120848264 120848343 -63440319 - L2 LINE L2 -1307 2007 1926 1801 166 7 7 chr4 120848343 120848638 -63440024 + AluJb SINE Alu 1 295 -17 491 329 7 46 chr4 120848638 120848841 -63439821 - L2 LINE L2 -1388 1926 1736 24 0 0 0 chr4 120851209 120851233 -63437429 + AT_rich Low_complexity Low_complexity 1 24 0 313 258 26 90 chr4 120853010 120853165 -63435497 - MIR SINE MIR -2 260 116 728 169 0 7 chr4 120853352 120853488 -63435174 + L1MB4 LINE L1 5696 5830 -350 5671 160 18 9 chr4 120853899 120855312 -63433350 - L1MA9 LINE L1 0 6548 5120 1984 160 89 35 chr4 120855312 120855718 -63432944 + MSTC LTR MaLR 1 428 0 1072 196 14 136 chr4 120855719 120856071 -63432591 + MLT1A1 LTR MaLR 57 365 0 9039 196 22 35 chr4 120856071 120858040 -63430622 - L1MA9 LINE L1 -1258 5124 3186 2015 128 7 0 chr4 120858040 120858321 -63430341 - AluSx SINE Alu -18 294 12 9039 196 22 35 chr4 120858321 120858561 -63430101 - L1MA9 LINE L1 -3196 3186 2944 1695 177 0 27 chr4 120858571 120858865 -63429797 - AluJb SINE Alu -9 303 18 837 178 79 0 chr4 120858907 120859109 -63429553 + L1MA7 LINE L1 6061 6278 -13 2340 268 65 26 chr4 120859136 120860814 -63427848 - L1MA9 LINE L1 -3453 2929 1201 188 192 58 77 chr4 120861337 120861389 -63427273 - L2 LINE L2 0 3272 3222 186 71 0 0 chr4 120861395 120861423 -63427239 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 583 269 115 0 chr4 120861426 120861582 -63427080 - MER5A DNA MER1_type -15 174 1 287 319 78 57 chr4 120861622 120861763 -63426899 + MER91A DNA MER1_type 7 150 -46 281 280 160 0 chr4 120861892 120861967 -63426695 + MER5A DNA MER1_type 8 94 -95 21 0 0 0 chr4 120862664 120862685 -63425977 + AT_rich Low_complexity Low_complexity 1 21 0 751 214 36 6 chr4 120863092 120863260 -63425402 - MER5A DNA MER1_type -16 173 1 30 27 0 0 chr4 120863589 120863626 -63425036 + AT_rich Low_complexity Low_complexity 1 37 0 228 111 0 0 chr4 120865879 120865915 -63422747 + (CCA)n Simple_repeat Simple_repeat 1 36 0 2157 103 17 0 chr4 120866164 120866466 -63422196 - AluSx SINE Alu -1 311 5 181 115 0 0 chr4 120866624 120866650 -63422012 - L2 LINE L2 -21 3251 3226 185 388 41 31 chr4 120866713 120866811 -63421851 - MIR3 SINE MIR -109 99 1 1045 143 6 0 chr4 120867690 120867872 -63420790 + L1MA4 LINE L1 6113 6295 -5 758 259 72 106 chr4 120868507 120868796 -63419866 - MLT1L LTR MaLR -48 567 307 216 0 0 0 chr4 120868796 120868820 -63419842 + (CA)n Simple_repeat Simple_repeat 1 24 0 758 259 72 106 chr4 120868820 120869117 -63419545 - MLT1L LTR MaLR -308 307 1 196 231 39 19 chr4 120869942 120869994 -63418668 + MIR3 SINE MIR 149 201 -7 461 286 88 22 chr4 120870071 120870253 -63418409 - L2 LINE L2 -1 3312 3119 664 184 0 27 chr4 120870270 120870417 -63418245 + L1MA4 LINE L1 6152 6294 -6 192 77 0 0 chr4 120870426 120870452 -63418210 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 207 0 0 0 chr4 120870843 120870866 -63417796 + (CA)n Simple_repeat Simple_repeat 2 24 0 211 87 58 72 chr4 120871040 120871109 -63417553 + (TTAAA)n Simple_repeat Simple_repeat 3 70 0 198 0 0 0 chr4 120876863 120876885 -63411777 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 387 98 0 0 chr4 120877698 120877818 -63410844 + (CA)n Simple_repeat Simple_repeat 1 181 0 387 98 0 0 chr4 120877818 120877879 -63410783 + (CA)n Simple_repeat Simple_repeat 1 61 0 24 0 0 0 chr4 120878560 120878584 -63410078 + AT_rich Low_complexity Low_complexity 1 24 0 575 301 153 45 chr4 120878948 120880196 -63408466 - L2 LINE L2 -2 3270 1872 25 0 0 0 chr4 120880539 120880564 -63408098 + AT_rich Low_complexity Low_complexity 1 25 0 269 289 111 42 chr4 120880605 120880795 -63407867 + MIR SINE MIR 10 212 -50 6360 175 69 25 chr4 120880947 120882320 -63406342 + Charlie1a DNA MER1_type 1 1433 -22 511 296 115 64 chr4 120882778 120883092 -63405570 - L2 LINE L2 -1 3271 2942 24 32 0 0 chr4 120883296 120883327 -63405335 + AT_rich Low_complexity Low_complexity 1 31 0 272 313 157 0 chr4 120883515 120883598 -63405064 - L2 LINE L2 -7 3265 3170 754 239 74 35 chr4 120884765 120884995 -63403667 + MIR SINE MIR 12 250 -12 220 255 293 9 chr4 120885230 120885336 -63403326 - MIR SINE MIR -112 150 15 22 0 0 0 chr4 120885859 120885881 -63402781 + AT_rich Low_complexity Low_complexity 1 22 0 269 234 263 17 chr4 120885915 120886090 -63402572 - MIR SINE MIR -2 260 43 216 0 0 0 chr4 120887038 120887062 -63401600 + (T)n Simple_repeat Simple_repeat 1 24 0 604 262 12 33 chr4 120888581 120888786 -63399876 - MLT1H LTR MaLR -305 244 1 1240 248 126 38 chr4 120889560 120890224 -63398438 + LTR50 LTR ERVL 1 771 -24 9355 174 18 2 chr4 120890330 120892091 -63396571 + L1PB1 LINE L1 3546 5334 -812 1363 211 9 6 chr4 120892086 120892408 -63396254 - L1PB1 LINE L1 -796 5350 5028 * 5212 117 10 3 chr4 120892404 120892831 -63395831 + L1PB1 LINE L1 5361 5798 -353 396 103 0 0 chr4 120892831 120892889 -63395773 + (TA)n Simple_repeat Simple_repeat 1 58 0 5212 117 10 3 chr4 120892889 120893242 -63395420 + L1PB1 LINE L1 5798 6147 -4 4457 143 75 72 chr4 120893250 120894239 -63394423 + L1MA9 LINE L1 5316 6307 -5 273 366 84 0 chr4 120895306 120895448 -63393214 - MIR SINE MIR -81 181 28 270 245 0 0 chr4 120895739 120895792 -63392870 - MIR SINE MIR -111 151 99 2447 60 0 25 chr4 120896512 120896826 -63391836 + AluY SINE Alu 1 306 -5 272 330 59 25 chr4 120897305 120897423 -63391239 + MIR3 SINE MIR 64 185 -23 389 111 0 0 chr4 120900455 120900509 -63388153 + MIR3 SINE MIR 115 168 -40 227 287 0 140 chr4 120901168 120901318 -63387344 + MIR3 SINE MIR 51 179 -29 25 0 0 0 chr4 120903357 120903382 -63385280 + AT_rich Low_complexity Low_complexity 1 25 0 1479 176 59 22 chr4 120905577 120905913 -63382749 + AluJo SINE Alu 1 346 0 1874 155 17 3 chr4 120906202 120906498 -63382164 + AluJb SINE Alu 1 300 -12 336 288 0 56 chr4 120906618 120906743 -63381919 - L1MC4 LINE L1 -1322 6720 6603 689 226 28 34 chr4 120906991 120907168 -63381494 + MER5B DNA MER1_type 1 176 -2 34 42 0 0 chr4 120907632 120907680 -63380982 + AT_rich Low_complexity Low_complexity 1 48 0 1718 177 7 7 chr4 120908142 120908442 -63380220 - AluJo SINE Alu -12 300 1 539 160 48 24 chr4 120908921 120909046 -63379616 + L2 LINE L2 2074 2201 -1113 218 399 14 21 chr4 120909058 120909201 -63379461 - L2 LINE L2 -540 2774 2633 186 329 163 24 chr4 120909488 120909740 -63378922 + L2 LINE L2 3027 3313 0 45 34 0 0 chr4 120911969 120912028 -63376634 + AT_rich Low_complexity Low_complexity 1 59 0 1688 185 0 3 chr4 120912186 120912473 -63376189 + AluJb SINE Alu 7 292 -20 2437 73 0 0 chr4 120912568 120912868 -63375794 + AluY SINE Alu 1 300 -11 364 182 68 34 chr4 120914838 120914926 -63373736 - MIR SINE MIR -20 242 152 412 283 150 0 chr4 120915107 120915227 -63373435 + MIR3 SINE MIR 32 169 -39 2303 82 14 0 chr4 120916055 120916348 -63372314 + AluSg SINE Alu 1 297 -13 553 264 86 6 chr4 120916362 120916536 -63372126 - MIR SINE MIR 0 262 75 2001 203 33 26 chr4 120916678 120917137 -63371525 + LTR40b LTR ERVL 1 462 0 21 0 0 0 chr4 120920737 120920758 -63367904 + AT_rich Low_complexity Low_complexity 1 21 0 685 318 74 68 chr4 120921603 120922045 -63366617 - L2 LINE L2 -98 3215 2766 1745 152 4 18 chr4 120922045 120922322 -63366340 - AluJb SINE Alu -24 288 16 685 318 74 68 chr4 120922322 120922635 -63366027 - L2 LINE L2 -547 2766 2457 207 100 0 0 chr4 120923000 120923030 -63365632 + (CA)n Simple_repeat Simple_repeat 2 31 0 474 299 51 84 chr4 120924173 120924508 -63364154 - L2 LINE L2 -8 3305 2982 207 292 6 137 chr4 120925570 120925745 -63362917 + MIR SINE MIR 4 155 -62 393 302 0 0 chr4 120926983 120927089 -63361573 - MER5A DNA MER1_type -80 109 4 1932 152 7 7 chr4 120927381 120927684 -63360978 - AluJb SINE Alu -9 303 1 868 119 0 182 chr4 120928445 120928681 -63359981 - 7SK RNA RNA 0 193 1 249 163 0 0 chr4 120928899 120928948 -63359714 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 358 330 92 17 chr4 120929006 120929179 -63359483 + MIR SINE MIR 21 206 -56 183 204 0 0 chr4 120929893 120929937 -63358725 + T-rich Low_complexity Low_complexity 1 44 0 30 27 0 0 chr4 120930277 120930314 -63358348 + AT_rich Low_complexity Low_complexity 1 37 0 180 77 0 0 chr4 120930647 120930673 -63357989 + (CA)n Simple_repeat Simple_repeat 1 26 0 243 301 0 38 chr4 120931128 120931261 -63357401 + (TA)n Simple_repeat Simple_repeat 1 128 0 259 230 178 15 chr4 120931403 120931538 -63357124 - L1ME4a LINE L1 0 6121 5965 950 259 59 19 chr4 120931644 120931964 -63356698 - MER46C DNA MER2_type -5 333 1 516 250 76 23 chr4 120932111 120932283 -63356379 - L1ME4a LINE L1 -423 5698 5518 22 35 0 0 chr4 120932419 120932448 -63356214 + AT_rich Low_complexity Low_complexity 1 29 0 1821 123 0 49 chr4 120932591 120932901 -63355761 - AluSx SINE Alu 0 307 12 456 19 0 0 chr4 120933028 120933081 -63355581 + (TG)n Simple_repeat Simple_repeat 1 53 0 21 0 0 0 chr4 120935924 120935945 -63352717 + AT_rich Low_complexity Low_complexity 1 21 0 254 73 24 0 chr4 120936102 120936143 -63352519 + (CA)n Simple_repeat Simple_repeat 2 43 0 1504 243 112 17 chr4 120936889 120937363 -63351299 + LTR40a LTR ERVL 1 519 0 228 219 0 0 chr4 120937421 120937462 -63351200 - L2 LINE L2 -19 3253 3213 4614 38 2 0 chr4 120938419 120938973 -63349689 - L1PA5 LINE L1 -3 6151 5597 2107 115 0 3 chr4 120939206 120939501 -63349161 + AluSx SINE Alu 6 299 -13 1011 128 0 0 chr4 120939501 120939642 -63349020 + AluSg/x SINE Alu 134 274 -38 1029 107 6 17 chr4 120939656 120939834 -63348828 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 1043 54 11 48 chr4 120939846 120940032 -63348630 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 181 158 61 0 chr4 120942341 120942423 -63346239 + (TG)n Simple_repeat Simple_repeat 1 87 0 494 81 3 12 chr4 120942987 120943068 -63345594 - L1PA3 LINE L1 -1373 4773 4696 7584 30 0 0 chr4 120943068 120944454 -63344208 + L1PA3 LINE L1 4768 6152 -3 320 309 0 0 chr4 120944769 120944850 -63343812 + MIR SINE MIR 53 133 -129 315 191 9 19 chr4 120946225 120946330 -63342332 + (TA)n Simple_repeat Simple_repeat 1 104 0 198 0 0 0 chr4 120946654 120946676 -63341986 + (T)n Simple_repeat Simple_repeat 1 22 0 1730 136 11 11 chr4 120946715 120946987 -63341675 - AluSx SINE Alu -40 272 1 351 0 0 0 chr4 120947266 120947305 -63341357 + (CA)n Simple_repeat Simple_repeat 2 40 0 1099 248 92 10 chr4 120948812 120949126 -63339536 + MLT1C LTR MaLR 128 467 0 621 285 127 46 chr4 120949897 120950366 -63338296 + MER115 DNA AcHobo 156 688 -5 1896 174 0 3 chr4 120950439 120950750 -63337912 - AluJb SINE Alu -2 310 1 521 211 64 32 chr4 120951465 120951614 -63337048 + MIR SINE MIR 54 210 -52 1628 146 22 57 chr4 120951614 120951930 -63336732 + AluJo SINE Alu 1 305 -7 404 264 88 0 chr4 120952597 120952722 -63335940 + MER91C DNA MER1_type 5 140 0 2178 130 0 0 chr4 120955105 120955413 -63333249 + AluSg SINE Alu 1 308 -2 559 289 25 0 chr4 120958176 120958335 -63330327 - MIR SINE MIR -22 240 78 2211 196 32 8 chr4 120958641 120959199 -63329463 + MER82 DNA MER2_type 23 653 0 2328 110 0 0 chr4 120959445 120959753 -63328909 - AluSx SINE Alu -4 308 1 215 247 75 54 chr4 120959767 120959860 -63328802 - MIR SINE MIR -71 191 97 499 303 31 19 chr4 120959875 120960052 -63328610 - MIR3 SINE MIR -18 190 14 71 33 0 0 chr4 120960638 120960730 -63327932 + AT_rich Low_complexity Low_complexity 1 92 0 1003 85 0 0 chr4 120960913 120961042 -63327620 + AluSp/q SINE Alu 168 296 -17 2101 128 0 3 chr4 120964536 120964834 -63323828 + AluSg SINE Alu 1 297 -13 379 274 22 11 chr4 120964898 120965032 -63323630 + MIR3 SINE MIR 68 202 -6 307 239 129 52 chr4 120965613 120965776 -63322886 - MER5A DNA MER1_type 0 178 2 398 255 32 0 chr4 120967617 120967711 -63320951 - L2 LINE L2 0 3313 3217 779 214 86 27 chr4 120967728 120967948 -63320714 + ORSL DNA AcHobo 39 271 -4 418 301 81 43 chr4 120967948 120968157 -63320505 - L2 LINE L2 -88 3225 3009 22 70 0 0 chr4 120968186 120968229 -63320433 + AT_rich Low_complexity Low_complexity 1 43 0 204 182 0 0 chr4 120969052 120969096 -63319566 + (CA)n Simple_repeat Simple_repeat 2 45 0 1970 104 0 7 chr4 120970014 120970284 -63318378 - AluSg SINE Alu -12 298 31 225 379 65 0 chr4 120971548 120971672 -63316990 + MIR SINE MIR 92 223 -39 21 0 0 0 chr4 120973157 120973178 -63315484 + AT_rich Low_complexity Low_complexity 1 21 0 2041 113 0 3 chr4 120974011 120974295 -63314367 + AluSx SINE Alu 1 283 -29 293 0 27 0 chr4 120974298 120974335 -63314327 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 2095 122 7 0 chr4 120975248 120975543 -63313119 + AluSx SINE Alu 1 297 -15 24 32 0 0 chr4 120976491 120976522 -63312140 + AT_rich Low_complexity Low_complexity 1 31 0 305 329 104 43 chr4 120977708 120977872 -63310790 + MER5A DNA MER1_type 4 177 -12 209 305 63 52 chr4 120980278 120980452 -63308210 + L2 LINE L2 2811 2986 -286 286 214 24 48 chr4 120980576 120980660 -63308002 + L2 LINE L2 3191 3272 0 297 0 0 0 chr4 120980711 120980744 -63307918 + (TG)n Simple_repeat Simple_repeat 2 34 0 546 287 24 24 chr4 120981925 120982092 -63306570 + MIR SINE MIR 12 178 -84 193 339 0 0 chr4 120982684 120982743 -63305919 - L2 LINE L2 -556 2758 2700 783 259 95 44 chr4 120982895 120983169 -63305493 + L2 LINE L2 2256 2543 -771 2255 103 20 0 chr4 120983249 120983550 -63305112 - AluSg SINE Alu -3 307 1 1312 187 25 36 chr4 120983556 120983834 -63304828 - AluJo SINE Alu 0 312 38 287 264 14 14 chr4 120983938 120984010 -63304652 + MIR SINE MIR 44 115 -147 1103 251 133 26 chr4 120984017 120984623 -63304039 + L2 LINE L2 2585 3268 -45 308 328 63 104 chr4 120985097 120985365 -63303297 + L2 LINE L2 3012 3268 -4 37 52 0 0 chr4 120985631 120985689 -63302973 + AT_rich Low_complexity Low_complexity 1 58 0 2099 137 0 0 chr4 120985874 120986167 -63302495 - AluSx SINE Alu -19 293 1 234 274 43 26 chr4 120986432 120986549 -63302113 + L1MC4 LINE L1 7923 8041 -1 2109 119 0 7 chr4 120986775 120987084 -63301578 - AluSx SINE Alu 0 307 1 625 145 230 0 chr4 120987579 120987731 -63300931 - MER53 DNA DNA -2 187 1 21 0 0 0 chr4 120988561 120988582 -63300080 + AT_rich Low_complexity Low_complexity 1 21 0 2042 139 0 7 chr4 120988688 120988982 -63299680 - AluSx SINE Alu -20 292 1 218 389 33 0 chr4 120988987 120989077 -63299585 - L2 LINE L2 0 3272 3180 405 294 168 0 chr4 120989101 120989244 -63299418 - L3 LINE CR1 -4 1573 1407 816 215 5 46 chr4 120989295 120989490 -63299172 + AluJb SINE Alu 126 312 0 369 0 0 0 chr4 120991566 120991607 -63297055 + (ATG)n Simple_repeat Simple_repeat 2 42 0 296 331 209 12 chr4 120993214 120993386 -63295276 + MIR SINE MIR 41 246 -16 289 270 46 40 chr4 120994301 120994453 -63294209 + MIR SINE MIR 52 204 -58 366 299 7 101 chr4 120995025 120995170 -63293492 - L2 LINE L2 -1168 2146 2038 2511 51 0 0 chr4 120995170 120995463 -63293199 + AluY SINE Alu 1 293 -18 366 299 7 101 chr4 120995463 120995595 -63293067 - L2 LINE L2 -1276 2038 1895 471 338 26 22 chr4 120995790 120996018 -63292644 + L2 LINE L2 1202 1430 -1884 288 0 0 0 chr4 120996676 120996708 -63291954 + (TG)n Simple_repeat Simple_repeat 2 33 0 420 254 8 8 chr4 120996773 120996891 -63291771 - MER69 DNA AcHobo 0 2526 2409 318 294 118 61 chr4 120998110 120998338 -63290324 - MIR SINE MIR -17 245 5 3068 105 50 81 chr4 120998556 120999100 -63289562 + MER1A DNA MER1_type 1 527 0 289 245 94 108 chr4 120999532 120999744 -63288918 + MLT1K LTR MaLR 363 571 -17 679 297 159 24 chr4 121000178 121000649 -63288013 + L2 LINE L2 2778 3313 0 309 328 49 38 chr4 121001569 121001752 -63286910 + MIR SINE MIR 78 262 0 980 235 72 16 chr4 121003629 121003935 -63284727 + LTR37B LTR ERV1 146 468 0 180 278 19 19 chr4 121003952 121004006 -63284656 + L2 LINE L2 1221 1274 -2040 206 329 25 13 chr4 121004129 121004208 -63284454 - MIR3 SINE MIR -28 180 101 249 98 0 0 chr4 121006120 121006161 -63282501 + (TTG)n Simple_repeat Simple_repeat 2 42 0 611 187 0 0 chr4 121007848 121007955 -63280707 - U6 snRNA snRNA 0 107 1 2861 244 55 12 chr4 121008346 121009244 -63279418 + L1MC4 LINE L1 6868 7853 -189 23 54 0 0 chr4 121009343 121009380 -63279282 + AT_rich Low_complexity Low_complexity 1 37 0 1870 131 34 17 chr4 121009937 121010235 -63278427 + AluSq SINE Alu 1 303 -10 410 304 44 7 chr4 121011067 121011202 -63277460 - MIR SINE MIR -35 227 88 2188 118 0 13 chr4 121012298 121012604 -63276058 + AluSx SINE Alu 2 303 -9 490 256 0 33 chr4 121013516 121013637 -63275025 - L2 LINE L2 -2 3311 3195 24 0 0 0 chr4 121013935 121013959 -63274703 + AT_rich Low_complexity Low_complexity 1 24 0 203 175 0 0 chr4 121014202 121014242 -63274420 + A-rich Low_complexity Low_complexity 3 42 0 660 296 58 0 chr4 121014890 121015062 -63273600 + MER91A DNA MER1_type 15 196 0 184 235 176 12 chr4 121016673 121016758 -63271904 + MIR SINE MIR 10 108 -154 206 261 0 0 chr4 121016790 121016836 -63271826 - L2 LINE L2 0 3313 3268 6175 136 15 14 chr4 121016963 121018268 -63270394 + L1PB1 LINE L1 4494 5797 -354 426 20 0 0 chr4 121018268 121018319 -63270343 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 6175 136 15 14 chr4 121018319 121018672 -63269990 + L1PB1 LINE L1 5797 6148 -3 237 231 56 7 chr4 121018919 121019062 -63269600 + (TA)n Simple_repeat Simple_repeat 1 150 0 547 153 10 10 chr4 121019190 121019288 -63269374 + MER4A LTR ERV1 1 98 -566 1715 155 32 19 chr4 121019288 121019629 -63269033 + MER4A LTR ERV1 261 664 0 449 315 73 45 chr4 121019631 121020123 -63268539 - L1MC/D LINE L1 -459 5662 5263 1851 284 74 20 chr4 121020133 121020846 -63267816 - L2 LINE L2 -173 3140 2383 2545 103 11 16 chr4 121020846 121021223 -63267439 - THE1C LTR MaLR 0 375 1 1851 284 74 20 chr4 121021223 121021339 -63267323 - L2 LINE L2 -930 2383 2275 265 254 0 0 chr4 121021359 121021426 -63267236 - MIR SINE MIR -48 214 148 1648 146 22 72 chr4 121021600 121021921 -63266741 - AluJb SINE Alu -7 305 1 3498 158 21 67 chr4 121022702 121022883 -63265779 + LTR8 LTR ERV1 1 189 -502 1941 129 95 3 chr4 121022883 121023208 -63265454 + THE1A LTR MaLR 1 355 0 3498 158 21 67 chr4 121023208 121023748 -63264914 + LTR8 LTR ERV1 189 689 -2 415 256 44 0 chr4 121023756 121023846 -63264816 + MER21B LTR ERV1 1 94 -769 1517 230 94 69 chr4 121023892 121024531 -63264131 + MER21B LTR ERV1 98 752 -111 271 274 16 0 chr4 121024850 121024912 -63263750 - L2 LINE L2 0 3313 3251 292 231 0 90 chr4 121025051 121025129 -63263533 - MIR SINE MIR -184 78 8 1480 210 44 38 chr4 121025571 121025937 -63262725 - MLT1A2 LTR MaLR 0 374 7 185 383 0 35 chr4 121026626 121026741 -63261921 - L3 LINE CR1 -518 1059 949 2498 66 0 3 chr4 121028496 121028800 -63259862 + AluY SINE Alu 1 303 -8 203 146 24 0 chr4 121029632 121029673 -63258989 + CT-rich Low_complexity Low_complexity 3 44 0 196 333 85 39 chr4 121030579 121030708 -63257954 + L2 LINE L2 2902 3036 -236 21 0 0 0 chr4 121032114 121032135 -63256527 + AT_rich Low_complexity Low_complexity 1 21 0 389 319 133 6 chr4 121032930 121033096 -63255566 - MIR3 SINE MIR -2 206 20 24 77 0 0 chr4 121033142 121033194 -63255468 + AT_rich Low_complexity Low_complexity 1 52 0 557 100 11 0 chr4 121033566 121033656 -63255006 + (TTCC)n Simple_repeat Simple_repeat 2 92 0 256 167 0 0 chr4 121033656 121033698 -63254964 + CT-rich Low_complexity Low_complexity 5 46 0 759 214 14 0 chr4 121033698 121033838 -63254824 - FAM SINE Alu -18 167 26 480 202 0 0 chr4 121033830 121033914 -63254748 - FRAM/FAM SINE Alu -94 82 1 * 2071 118 0 0 chr4 121033969 121034249 -63254413 + AluSp SINE Alu 1 280 -33 240 35 0 0 chr4 121034250 121034279 -63254383 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 21 36 0 0 chr4 121035680 121035708 -63252954 + AT_rich Low_complexity Low_complexity 1 28 0 242 283 43 22 chr4 121035947 121036039 -63252623 - MER102b DNA MER1_type -16 325 232 365 356 17 17 chr4 121037442 121037619 -63251043 + MIR SINE MIR 32 208 -54 2580 47 0 0 chr4 121037856 121038156 -63250506 - AluY SINE Alu -11 300 1 2043 128 0 0 chr4 121039162 121039444 -63249218 + AluSx SINE Alu 31 312 0 238 260 6 6 chr4 121041160 121041337 -63247325 + GA-rich Low_complexity Low_complexity 1 177 0 21 36 0 0 chr4 121043631 121043659 -63245003 + AT_rich Low_complexity Low_complexity 1 28 0 680 131 0 0 chr4 121044254 121044353 -63244309 + FLAM_A SINE Alu 29 127 -15 2164 125 0 3 chr4 121044360 121044665 -63243997 + AluSx SINE Alu 1 304 -8 2012 106 0 0 chr4 121044665 121044953 -63243709 + AluSc SINE Alu 17 304 0 203 316 53 13 chr4 121047370 121047446 -63241216 + MIR3 SINE MIR 101 179 -29 35 0 0 0 chr4 121047899 121047934 -63240728 + AT_rich Low_complexity Low_complexity 1 35 0 343 275 134 28 chr4 121048548 121048690 -63239972 + MER5A DNA MER1_type 9 165 -24 430 218 81 16 chr4 121049416 121049540 -63239122 - L1ME3A LINE L1 -1 6169 6038 2087 136 0 0 chr4 121050436 121050722 -63237940 + AluSx SINE Alu 1 286 -26 752 254 17 15 chr4 121050962 121051166 -63237496 - MLT1H LTR MaLR -317 232 63 348 221 13 0 chr4 121051287 121051364 -63237298 + MLT1H LTR MaLR 464 541 -8 378 85 0 0 chr4 121052946 121053005 -63235657 + (TCTCCC)n Simple_repeat Simple_repeat 2 60 0 9322 90 24 34 chr4 121053013 121054409 -63234253 + SVA Other Other 3 1385 -1 2560 104 5 39 chr4 121055928 121056314 -63232348 - L1PB1 LINE L1 -1 6150 5778 242 300 7 43 chr4 121056371 121056511 -63232151 - AluSc SINE Alu -14 285 151 1254 109 0 59 chr4 121057818 121057833 -63230829 - L1P5 LINE L1 -358 5793 5779 1978 102 18 18 chr4 121057833 121058132 -63230530 - AluSq SINE Alu 0 313 15 1254 109 0 59 chr4 121058132 121058318 -63230344 - L1P5 LINE L1 -372 5779 5604 353 279 27 61 chr4 121058437 121058584 -63230078 + MIR SINE MIR 77 218 -44 2410 72 0 22 chr4 121060918 121061236 -63227426 + AluY SINE Alu 1 311 0 276 284 0 0 chr4 121061552 121061633 -63227029 + (TG)n Simple_repeat Simple_repeat 2 82 0 2527 74 7 0 chr4 121061980 121062289 -63226373 + AluSq SINE Alu 1 311 -2 2533 257 117 50 chr4 121063108 121063811 -63224851 - L2 LINE L2 0 3313 2658 2215 104 0 7 chr4 121063811 121064108 -63224554 + AluY SINE Alu 1 295 -16 2533 257 117 50 chr4 121064108 121064151 -63224511 - L2 LINE L2 -655 2658 2619 1580 149 8 4 chr4 121064151 121064390 -63224272 + AluSx SINE Alu 47 289 -23 251 71 24 0 chr4 121064390 121064432 -63224230 + (TTAAA)n Simple_repeat Simple_repeat 3 45 0 2533 257 117 50 chr4 121064441 121065066 -63223596 - L2 LINE L2 -694 2619 1803 1930 203 33 15 chr4 121065887 121066276 -63222386 - MSTD LTR MaLR 0 396 1 337 245 66 38 chr4 121066530 121066636 -63222026 - MLT1K LTR MaLR -17 571 463 25 51 0 0 chr4 121066812 121066851 -63221811 + AT_rich Low_complexity Low_complexity 1 39 0 1358 249 40 45 chr4 121070034 121070408 -63218254 - MLT1A2 LTR MaLR 0 374 3 1922 195 96 62 chr4 121070471 121070920 -63217742 + MLT1F LTR MaLR 13 483 -59 2341 71 0 7 chr4 121070920 121071216 -63217446 + AluY SINE Alu 1 294 -17 1922 195 96 62 chr4 121071216 121071279 -63217383 + MLT1F LTR MaLR 483 542 0 2099 155 0 0 chr4 121071345 121071654 -63217008 - AluJb SINE Alu -2 310 2 2361 115 0 0 chr4 121072223 121072536 -63216126 + AluSq SINE Alu 1 313 0 22 56 0 0 chr4 121072795 121072831 -63215831 + AT_rich Low_complexity Low_complexity 1 36 0 5812 53 10 21 chr4 121073597 121074149 -63214513 - LTR8 LTR ERV1 0 691 147 2360 73 0 7 chr4 121074149 121074449 -63214213 + AluY SINE Alu 2 299 -12 5812 53 10 21 chr4 121074449 121074595 -63214067 - LTR8 LTR ERV1 -544 147 1 247 223 76 63 chr4 121074595 121074694 -63213968 - MIR3 SINE MIR -133 75 4 369 222 25 0 chr4 121076199 121076280 -63212382 - Zaphod DNA AcHobo -3349 682 600 21 36 0 0 chr4 121076324 121076352 -63212310 + AT_rich Low_complexity Low_complexity 1 28 0 1057 238 34 4 chr4 121076437 121076706 -63211956 + Zaphod DNA AcHobo 436 712 -3319 6177 96 35 5 chr4 121076709 121077591 -63211071 - L1PA11 LINE L1 -8 6166 5258 985 204 91 68 chr4 121077591 121078316 -63210346 + Zaphod DNA AcHobo 673 4031 0 355 250 0 0 chr4 121078356 121078424 -63210238 - MIR3 SINE MIR -17 191 124 601 311 78 10 chr4 121078841 121079147 -63209515 - LTR33 LTR ERVL -186 335 9 2217 236 37 16 chr4 121080925 121081472 -63207190 - MER74B LTR ERVL -9 613 56 388 265 16 18 chr4 121081481 121081611 -63207051 + MIR SINE MIR 27 154 -65 887 111 0 0 chr4 121081623 121081740 -63206922 + AluSc SINE Alu 18 134 -175 1998 116 58 0 chr4 121081740 121082017 -63206645 + AluSc SINE Alu 1 293 -16 201 74 0 0 chr4 121082383 121082410 -63206252 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 189 328 164 18 chr4 121083171 121083342 -63205320 + L3b LINE CR1 1111 1306 -277 295 229 103 10 chr4 121083750 121083854 -63204808 + MIR SINE MIR 49 159 -58 2192 292 59 16 chr4 121083855 121084601 -63204061 + MER69 DNA AcHobo 25 802 -1724 249 148 37 19 chr4 121084610 121084664 -63203998 + MER69 DNA AcHobo 2031 2085 -441 397 118 186 20 chr4 121084723 121084824 -63203838 + MER69 DNA AcHobo 2085 2202 -324 259 251 74 107 chr4 121084824 121085214 -63203448 - MLT1H LTR MaLR 0 542 110 1120 221 70 6 chr4 121085284 121085596 -63203066 + MER69 DNA AcHobo 2195 2526 0 269 286 0 0 chr4 121085596 121085659 -63203003 + MIR SINE MIR 158 220 -42 245 305 0 0 chr4 121085834 121085916 -63202746 + L2 LINE L2 1904 1985 -1329 500 256 172 22 chr4 121085918 121085965 -63202697 - MIR SINE MIR -8 254 215 420 78 0 233 chr4 121085965 121086068 -63202594 - MADE1 DNA Mariner 0 80 2 500 256 172 22 chr4 121086068 121086200 -63202462 - MIR SINE MIR -47 215 48 201 250 208 42 chr4 121086302 121086446 -63202216 - MIR SINE MIR -86 176 9 2075 153 0 3 chr4 121086621 121086928 -63201734 + AluSx SINE Alu 1 306 -6 2008 125 4 0 chr4 121087393 121087725 -63200937 - AluSx SINE Alu 0 333 1 210 325 13 39 chr4 121088180 121088257 -63200405 + L2 LINE L2 2684 2758 -556 446 317 35 96 chr4 121088513 121088825 -63199837 + L2 LINE L2 2969 3261 -11 198 0 0 0 chr4 121088876 121088898 -63199764 + (TTA)n Simple_repeat Simple_repeat 2 23 0 429 226 105 40 chr4 121088914 121089100 -63199562 + MER41D LTR ERV1 282 499 -55 373 205 133 33 chr4 121089740 121089891 -63198771 - MLT1G1 LTR MaLR 0 595 430 297 202 135 22 chr4 121089942 121090031 -63198631 - MLT1G1 LTR MaLR -288 242 144 23 0 0 0 chr4 121091142 121091165 -63197497 + AT_rich Low_complexity Low_complexity 1 23 0 709 206 28 21 chr4 121091170 121091311 -63197351 + AluJo SINE Alu 2 143 -169 251 355 22 14 chr4 121091342 121091480 -63197182 + L2 LINE L2 1773 1911 -1403 272 357 86 36 chr4 121091715 121092132 -63196530 + L2 LINE L2 2422 2859 -455 282 283 138 46 chr4 121092252 121092492 -63196170 + L2 LINE L2 2996 3257 -56 766 266 112 0 chr4 121093714 121093928 -63194734 + MIR SINE MIR 15 252 -10 1811 88 17 4 chr4 121094719 121094958 -63193704 - L1PA5 LINE L1 0 6154 5913 324 49 0 0 chr4 121094958 121094999 -63193663 + L1PA5 LINE L1 5935 5975 -179 1082 72 43 0 chr4 121097453 121097592 -63191070 - MER51B LTR ERV1 -232 145 1 1511 96 27 14 chr4 121097817 121098037 -63190625 + AluY SINE Alu 88 310 -1 32 26 0 0 chr4 121098100 121098139 -63190523 + AT_rich Low_complexity Low_complexity 1 39 0 230 316 25 0 chr4 121098500 121098579 -63190083 - L2 LINE L2 -2 3270 3190 2435 88 0 0 chr4 121098594 121098901 -63189761 - AluY SINE Alu -4 307 1 4154 231 200 21 chr4 121099312 121101347 -63187315 + L1M3e LINE L1 1 2464 -4573 34781 107 18 12 chr4 121101356 121107462 -63181200 + L1PA7 LINE L1 11 6154 0 4050 201 47 34 chr4 121107500 121109117 -63179545 + L1MA9 LINE L1 2570 4165 -3566 2299 94 0 3 chr4 121109117 121109416 -63179246 + AluSq SINE Alu 1 298 -15 4050 201 47 34 chr4 121109416 121109532 -63179130 + L1MA9 LINE L1 4165 4278 -3453 1831 151 39 0 chr4 121109532 121109817 -63178845 + AluSx SINE Alu 1 296 -16 4050 201 47 34 chr4 121109817 121110364 -63178298 + L1MA9 LINE L1 4278 4816 -2915 1908 147 16 10 chr4 121110364 121110671 -63177991 + AluSx SINE Alu 1 309 -3 4050 201 47 34 chr4 121110671 121111348 -63177314 + L1MA9 LINE L1 4816 5483 -2248 2258 113 0 0 chr4 121111348 121111657 -63177005 + AluY SINE Alu 1 309 -2 4050 201 47 34 chr4 121111657 121111819 -63176843 + L1MA9 LINE L1 5483 5641 -2090 1871 104 0 0 chr4 121111819 121112068 -63176594 + AluSx SINE Alu 64 312 0 4050 201 47 34 chr4 121112068 121113866 -63174796 + L1MA9 LINE L1 5641 7730 -1 670 264 11 17 chr4 121114122 121114296 -63174366 + MIR3 SINE MIR 32 204 -4 237 337 33 0 chr4 121116081 121116173 -63172489 - MIR SINE MIR 0 262 168 243 200 55 0 chr4 121116785 121116840 -63171822 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 23 33 0 0 chr4 121118282 121118312 -63170350 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 121118709 121118731 -63169931 + AT_rich Low_complexity Low_complexity 1 22 0 307 268 25 32 chr4 121119390 121119547 -63169115 + L1MCc LINE L1 1368 1523 -4900 1732 208 115 7 chr4 121119593 121120002 -63168660 + MLT2B1 LTR ERVL 1 453 -67 235 106 76 0 chr4 121120014 121120080 -63168582 + (TA)n Simple_repeat Simple_repeat 2 72 0 540 285 103 35 chr4 121120115 121120785 -63167877 + L1MCc LINE L1 1607 2501 -4621 1596 136 0 0 chr4 121120902 121121144 -63167518 - L1M1 LINE L1 -576 5727 5486 241 314 24 0 chr4 121121200 121121324 -63167338 + L1MCc LINE L1 2760 2886 -4236 915 275 92 31 chr4 121122069 121122451 -63166211 + MLT2B2 LTR ERVL 61 465 -50 197 65 32 0 chr4 121122479 121122510 -63166152 + (TA)n Simple_repeat Simple_repeat 2 33 0 540 285 103 35 chr4 121122545 121123215 -63165447 + L1M4c LINE L1 1048 1942 -4621 1596 136 0 0 chr4 121123332 121123574 -63165088 - L1M1 LINE L1 -576 5727 5486 241 314 24 0 chr4 121123630 121123754 -63164908 + L1M4c LINE L1 2201 2327 -4236 6058 129 13 18 chr4 121124362 121125159 -63163503 + L1MA4A LINE L1 5265 6057 -246 2460 50 0 17 chr4 121125159 121125458 -63163204 - AluY SINE Alu -17 294 1 6058 129 13 18 chr4 121125458 121125701 -63162961 + L1MA4A LINE L1 6057 6300 -3 258 292 0 14 chr4 121125824 121125896 -63162766 + MER5A DNA MER1_type 59 129 -60 268 285 57 16 chr4 121127378 121127501 -63161161 + LTR67 LTR ERVL 424 551 -6 2112 116 0 69 chr4 121127959 121128321 -63160341 + MER1B DNA MER1_type 1 337 0 326 191 0 0 chr4 121128763 121128831 -63159831 + L1ME3A LINE L1 6098 6165 -5 23 0 0 0 chr4 121129224 121129247 -63159415 + AT_rich Low_complexity Low_complexity 1 23 0 4325 6 2 0 chr4 121129504 121129991 -63158671 + L1HS LINE L1 5665 6152 -3 21 57 0 0 chr4 121129993 121130028 -63158634 + AT_rich Low_complexity Low_complexity 1 35 0 2062 137 13 0 chr4 121130270 121130576 -63158086 + AluSx SINE Alu 1 310 -2 2254 247 175 8 chr4 121131075 121131874 -63156788 + L1 LINE L1 3330 4262 -1884 25 37 0 0 chr4 121132164 121132191 -63156471 + AT_rich Low_complexity Low_complexity 1 27 0 340 312 43 14 chr4 121132218 121132412 -63156250 - MIR SINE MIR -42 220 16 357 338 171 22 chr4 121133540 121133768 -63154894 - MLT1K LTR MaLR -285 303 42 365 319 167 22 chr4 121135909 121136185 -63152477 + HAL1 LINE L1 1085 1400 -1107 4709 157 47 42 chr4 121136199 121137755 -63150907 + L1MA7 LINE L1 4572 6132 -159 1138 193 87 44 chr4 121137755 121138076 -63150586 + MER44D DNA MER2_type 1 605 -4 4709 157 47 42 chr4 121138076 121138236 -63150426 + L1MA7 LINE L1 6132 6290 -1 5500 28 5 0 chr4 121138292 121138942 -63149720 + L1PA4 LINE L1 5502 6154 -1 312 111 0 0 chr4 121139065 121139110 -63149552 - Alu SINE Alu -8 293 249 257 281 0 16 chr4 121139432 121139496 -63149166 + CT-rich Low_complexity Low_complexity 2 64 0 655 251 26 21 chr4 121139496 121139687 -63148975 + LTR33 LTR ERVL 328 519 -2 322 295 113 30 chr4 121139801 121140130 -63148532 - HAL1 LINE L1 -1409 1098 743 31 26 0 0 chr4 121140773 121140811 -63147851 + AT_rich Low_complexity Low_complexity 1 38 0 209 213 0 0 chr4 121140939 121140986 -63147676 + T-rich Low_complexity Low_complexity 2 48 0 208 191 0 21 chr4 121141200 121141247 -63147415 + L2 LINE L2 3268 3313 0 546 276 25 10 chr4 121141870 121142066 -63146596 + L1M4 LINE L1 2374 2572 -3574 583 344 55 9 chr4 121142092 121142778 -63145884 - ERVL LTR ERVL -1900 3096 2907 262 243 0 14 chr4 121142898 121142968 -63145694 - L1MC4 LINE L1 -1333 6709 6641 1106 323 44 28 chr4 121142992 121143561 -63145101 - ERVL LTR ERVL -2267 2729 2152 2877 240 79 10 chr4 121143617 121144110 -63144552 - L1ME1 LINE L1 -15 6151 5693 2222 120 0 0 chr4 121144110 121144411 -63144251 - AluSc SINE Alu -8 301 1 2877 240 79 10 chr4 121144411 121145295 -63143367 - L1ME1 LINE L1 -473 5693 4679 21 0 0 0 chr4 121146054 121146075 -63142587 + AT_rich Low_complexity Low_complexity 1 21 0 262 292 53 94 chr4 121147255 121147426 -63141236 - MIR SINE MIR -70 192 29 2322 62 3 7 chr4 121147740 121148030 -63140632 - AluY SINE Alu -22 289 1 667 90 10 10 chr4 121148047 121148147 -63140515 - HY3 scRNA scRNA -1 100 1 400 286 177 11 chr4 121149698 121149873 -63138789 - MIR SINE MIR -24 238 35 703 189 30 0 chr4 121149960 121150092 -63138570 + AluJb SINE Alu 1 136 -176 2054 134 13 10 chr4 121150152 121150459 -63138203 - AluJo SINE Alu -4 308 1 2102 124 0 0 chr4 121150598 121150931 -63137731 - AluSx SINE Alu 0 333 1 24 0 0 0 chr4 121151292 121151316 -63137346 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4 121151752 121151774 -63136888 + AT_rich Low_complexity Low_complexity 1 22 0 1185 266 112 26 chr4 121153298 121153827 -63134835 + Charlie2b DNA MER1_type 89 662 -2120 447 198 157 8 chr4 121154008 121154129 -63134533 + Charlie2a DNA MER1_type 1467 1605 -1257 27 78 0 29 chr4 121154132 121154234 -63134428 + AT_rich Low_complexity Low_complexity 1 99 0 205 239 0 0 chr4 121154550 121154596 -63134066 + G-rich Low_complexity Low_complexity 1 46 0 183 365 200 4 chr4 121155949 121156179 -63132483 + L2 LINE L2 2599 2873 -441 195 339 67 101 chr4 121156224 121156551 -63132111 + L2 LINE L2 2957 3272 0 606 52 10 42 chr4 121156618 121156714 -63131948 + L1PA4 LINE L1 6063 6155 0 1294 109 95 5 chr4 121157394 121157605 -63131057 - MER30 DNA MER1_type 0 230 1 1697 156 0 57 chr4 121158634 121158949 -63129713 + AluJo SINE Alu 1 297 -15 369 174 357 10 chr4 121159007 121159105 -63129557 + FLAM_C SINE Alu 2 133 0 243 336 29 0 chr4 121160117 121160221 -63128441 + Charlie8 DNA MER1_type 5 111 -2306 388 317 8 0 chr4 121160343 121160466 -63128196 - L3 LINE CR1 -1 1576 1453 1774 161 63 3 chr4 121160466 121160801 -63127861 + MER46B DNA MER2_type 1 230 -6 542 234 66 144 chr4 121160822 121160926 -63127736 + L2 LINE L2 2916 3027 -286 2612 203 10 4 chr4 121160926 121161443 -63127219 + MLT2B1 LTR ERVL 1 520 0 542 234 66 144 chr4 121161443 121161761 -63126901 + L2 LINE L2 3027 3305 -8 558 338 168 16 chr4 121161779 121162232 -63126430 - L3 LINE CR1 -136 1441 920 310 205 39 26 chr4 121162908 121162986 -63125676 + MIR SINE MIR 100 178 -84 464 301 66 7 chr4 121163126 121163262 -63125400 - MIR3 SINE MIR -35 173 30 189 341 179 26 chr4 121163281 121163554 -63125108 - L3 LINE CR1 -1226 351 37 423 157 0 34 chr4 121165252 121165341 -63123321 - LTR1 LTR ERV1 -699 86 1 2884 217 52 11 chr4 121165342 121166177 -63122485 - L1M4 LINE L1 -1804 4342 3474 852 259 27 27 chr4 121167059 121167283 -63121379 + MIR SINE MIR 6 229 -33 471 293 92 48 chr4 121167677 121167795 -63120867 - HAL1 LINE L1 -934 1573 1462 2254 77 0 11 chr4 121167795 121168114 -63120548 + AluY SINE Alu 1 316 0 471 293 92 48 chr4 121168114 121168551 -63120111 - HAL1 LINE L1 -1045 1462 993 763 63 10 3 chr4 121169964 121170078 -63118584 + L1PA11 LINE L1 6045 6163 0 248 263 0 0 chr4 121170082 121170139 -63118523 - HAL1 LINE L1 -1637 870 814 320 313 108 11 chr4 121170733 121170909 -63117753 + L1ME LINE L1 5650 5842 -279 670 277 134 28 chr4 121171123 121171517 -63117145 - MLT1L LTR MaLR -8 607 172 24 32 0 0 chr4 121171536 121171567 -63117095 + AT_rich Low_complexity Low_complexity 1 31 0 11653 181 56 11 chr4 121171569 121175226 -63113436 - L1MA4 LINE L1 -15 7704 3879 3102 192 50 5 chr4 121175240 121175882 -63112780 - L1MA4 LINE L1 -5277 2288 1618 254 344 0 0 chr4 121175882 121175972 -63112690 - MLT1L LTR MaLR -482 133 44 1136 133 128 0 chr4 121176024 121176220 -63112442 - MLT1D LTR MaLR 0 505 285 21 0 0 0 chr4 121176389 121176410 -63112252 + AT_rich Low_complexity Low_complexity 1 21 0 475 258 80 6 chr4 121176580 121176743 -63111919 - MER5B DNA MER1_type 0 178 4 822 267 24 5 chr4 121177223 121177429 -63111233 + MER63A DNA MER1_type 1 210 0 21 0 0 0 chr4 121177484 121177505 -63111157 + AT_rich Low_complexity Low_complexity 1 21 0 546 216 142 54 chr4 121177804 121178008 -63110654 - MIR SINE MIR -10 252 31 2522 88 47 10 chr4 121178541 121178927 -63109735 + MLT2A1 LTR ERVL 1 400 -44 657 239 0 0 chr4 121178930 121179110 -63109552 + (TG)n Simple_repeat Simple_repeat 1 180 0 361 93 0 0 chr4 121179112 121179166 -63109496 + MLT2A1 LTR ERVL 399 452 -1 437 225 47 8 chr4 121179882 121180011 -63108651 + MER112 DNA MER1_type 121 254 -6 219 399 14 14 chr4 121180011 121180154 -63108508 + L2 LINE L2 2742 2884 -430 339 291 25 0 chr4 121180219 121180298 -63108364 + L2 LINE L2 3186 3266 -6 517 269 175 6 chr4 121180835 121180995 -63107667 - MER5A DNA MER1_type 0 189 3 1339 225 20 3 chr4 121181726 121182081 -63106581 + L1M4 LINE L1 4599 4959 -1187 2063 113 23 17 chr4 121182344 121182645 -63106017 + AluSg SINE Alu 1 303 -7 2477 83 0 13 chr4 121183649 121183963 -63104699 + AluY SINE Alu 1 310 -1 1911 102 0 4 chr4 121184517 121184771 -63103891 + AluY SINE Alu 52 304 -7 744 11 56 45 chr4 121184785 121184963 -63103699 + (TA)n Simple_repeat Simple_repeat 1 180 0 634 124 0 0 chr4 121185172 121185269 -63103393 + AluY SINE Alu 208 304 -7 697 4 60 46 chr4 121185283 121185521 -63103141 + (TA)n Simple_repeat Simple_repeat 1 241 0 322 252 39 19 chr4 121185993 121186096 -63102566 + MIR SINE MIR 2 106 -156 826 279 138 36 chr4 121186124 121186601 -63102061 + MLT1H LTR MaLR 24 549 0 328 177 16 0 chr4 121186606 121186668 -63101994 + MIR SINE MIR 107 169 -93 2205 107 0 10 chr4 121188847 121189157 -63099505 - AluSx SINE Alu 0 312 1 199 333 11 65 chr4 121190821 121190914 -63097748 - MIR SINE MIR -152 110 23 251 241 25 13 chr4 121191686 121191765 -63096897 - REP3 LTR ERV -44 518 439 2337 153 16 14 chr4 121192233 121192676 -63095986 - L1MB4 LINE L1 0 6180 5737 580 264 67 28 chr4 121192697 121192951 -63095711 + MLT1K LTR MaLR 322 585 -3 224 336 45 9 chr4 121193903 121194013 -63094649 - L3b LINE CR1 -359 1224 1111 229 204 75 86 chr4 121194156 121194249 -63094413 - MIR SINE MIR -1 261 170 197 173 0 115 chr4 121194282 121194334 -63094328 + MER5B DNA MER1_type 1 46 -132 634 219 28 39 chr4 121194362 121194540 -63094122 + MER5B DNA MER1_type 1 176 -2 324 284 17 26 chr4 121194609 121194725 -63093937 + MARNA DNA Mariner 90 204 -382 609 344 80 4 chr4 121194986 121195262 -63093400 + L2 LINE L2 95 391 -2923 499 269 34 0 chr4 121196394 121196543 -63092119 + MER63A DNA MER1_type 46 199 -11 297 250 48 24 chr4 121196555 121196639 -63092023 - MER5B DNA MER1_type -91 87 2 232 295 0 0 chr4 121196702 121196763 -63091899 - MER5A DNA MER1_type -1 188 128 229 272 170 27 chr4 121197049 121197196 -63091466 + MER102b DNA MER1_type 161 328 -13 27 0 0 0 chr4 121197226 121197253 -63091409 + AT_rich Low_complexity Low_complexity 1 27 0 374 314 41 54 chr4 121197255 121197497 -63091165 + L2 LINE L2 2817 3055 -217 21 36 0 0 chr4 121197667 121197695 -63090967 + AT_rich Low_complexity Low_complexity 1 28 0 2311 79 0 35 chr4 121198234 121198549 -63090113 - AluY SINE Alu -7 304 1 645 31 10 20 chr4 121199977 121200075 -63088587 + (GA)n Simple_repeat Simple_repeat 2 98 0 5857 218 67 45 chr4 121201346 121202753 -63085909 - L1MD2 LINE L1 -403 5956 4581 2240 124 25 25 chr4 121202753 121203117 -63085545 + THE1B LTR MaLR 1 364 0 5857 218 67 45 chr4 121203117 121204736 -63083926 - L1MD2 LINE L1 -1778 4581 2681 312 294 35 0 chr4 121205624 121205709 -63082953 - L2 LINE L2 -8 3264 3177 1360 239 21 15 chr4 121205775 121206109 -63082553 + MER58B DNA MER1_type 4 339 -2 181 163 41 0 chr4 121207150 121207199 -63081463 + (TATATG)n Simple_repeat Simple_repeat 1 51 0 4592 197 33 26 chr4 121207389 121209307 -63079355 + L1MB2 LINE L1 4240 6164 -7 656 266 10 26 chr4 121209355 121209547 -63079115 - MIR SINE MIR -62 200 12 2287 102 76 15 chr4 121210913 121211256 -63077406 - THE1B LTR MaLR 0 364 1 22 0 0 0 chr4 121211586 121211608 -63077054 + AT_rich Low_complexity Low_complexity 1 22 0 397 281 0 0 chr4 121211877 121211973 -63076689 - MER5B DNA MER1_type 0 178 83 233 235 0 0 chr4 121213428 121213479 -63075183 + MIR SINE MIR 200 250 -12 420 283 201 0 chr4 121213537 121213721 -63074941 + MIR SINE MIR 2 222 -40 484 318 11 6 chr4 121213837 121214013 -63074649 - MER5B DNA MER1_type 0 178 2 241 248 229 18 chr4 121215321 121215430 -63073232 + MIR SINE MIR 36 167 -95 3631 53 0 0 chr4 121215436 121215885 -63072777 + L1PA6 LINE L1 5703 6151 -3 3636 195 27 59 chr4 121216276 121217277 -63071385 + LTR5 LTR ERVK 1 969 0 2365 97 0 3 chr4 121218880 121219191 -63069471 - AluSg SINE Alu 0 310 1 28 0 0 0 chr4 121219254 121219282 -63069380 + AT_rich Low_complexity Low_complexity 1 28 0 374 237 43 11 chr4 121220526 121220619 -63068043 + MER5B DNA MER1_type 83 178 0 21 0 0 0 chr4 121220893 121220914 -63067748 + AT_rich Low_complexity Low_complexity 1 21 0 615 328 97 48 chr4 121221018 121221418 -63067244 - L1 LINE L1 -2195 3951 3572 2432 115 22 3 chr4 121221418 121221775 -63066887 + THE1B LTR MaLR 1 364 0 615 328 97 48 chr4 121221775 121222238 -63066424 - L1 LINE L1 -2574 3572 3045 743 307 67 57 chr4 121222285 121222312 -63066350 - L1 LINE L1 -3306 2840 2815 539 90 13 0 chr4 121222312 121222390 -63066272 + MADE1 DNA Mariner 2 80 0 743 307 67 57 chr4 121222390 121222447 -63066215 - L1 LINE L1 -3331 2815 2760 2717 220 34 18 chr4 121222447 121223061 -63065601 - MLT1E2 LTR MaLR -2 624 1 743 307 67 57 chr4 121223061 121223192 -63065470 - L1 LINE L1 -3386 2760 2632 360 0 0 0 chr4 121223192 121223232 -63065430 + (CA)n Simple_repeat Simple_repeat 2 41 0 743 307 67 57 chr4 121223232 121223701 -63064961 - L1 LINE L1 -3514 2632 2147 2221 182 32 5 chr4 121224192 121224599 -63064063 - MSTB1 LTR MaLR 0 432 15 307 315 40 34 chr4 121224633 121224782 -63063880 - HAL1b LINE L1 -912 436 287 21 0 0 0 chr4 121224935 121224956 -63063706 + AT_rich Low_complexity Low_complexity 1 21 0 14045 203 39 10 chr4 121225032 121225390 -63063272 - L1PB1 LINE L1 -1 6866 6520 522 60 36 0 chr4 121225390 121225473 -63063189 + (TA)n Simple_repeat Simple_repeat 1 86 0 14045 203 39 10 chr4 121225473 121226449 -63062213 - L1PB1 LINE L1 -347 6520 5574 2128 132 0 0 chr4 121226449 121226744 -63061918 - AluSx SINE Alu -17 295 1 14045 203 39 10 chr4 121226744 121231911 -63056751 - L1PB1 LINE L1 -1293 5574 6 2701 128 37 61 chr4 121231956 121232154 -63056508 - L1MA5 LINE L1 -5 6295 6094 3019 138 39 0 chr4 121232154 121232663 -63055999 - L1PB4 LINE L1 -2 6154 5626 2701 128 37 61 chr4 121232663 121233004 -63055658 - L1MA5 LINE L1 -206 6094 5769 12228 198 72 7 chr4 121233015 121233383 -63055279 - L1PB1 LINE L1 -1 6866 6523 255 61 0 0 chr4 121233383 121233416 -63055246 + (CA)n Simple_repeat Simple_repeat 2 34 0 12228 198 72 7 chr4 121233416 121239365 -63049297 - L1PB1 LINE L1 -344 6523 6 5459 164 27 38 chr4 121239371 121241022 -63047640 - L1M2 LINE L1 -515 5785 4147 587 246 112 107 chr4 121241732 121242020 -63046642 - MLT1H LTR MaLR -1 566 314 2184 82 3 10 chr4 121242020 121242326 -63046336 - AluY SINE Alu -7 304 1 587 246 112 107 chr4 121242326 121242640 -63046022 - MLT1H LTR MaLR -253 314 3 264 172 21 11 chr4 121243016 121243109 -63045553 + (TAGA)n Simple_repeat Simple_repeat 4 97 0 353 299 238 7 chr4 121244101 121244248 -63044414 + MER5A DNA MER1_type 9 189 0 221 261 0 43 chr4 121244553 121244622 -63044040 - L2 LINE L2 -207 3065 3000 210 337 30 20 chr4 121244930 121245031 -63043631 + MIR SINE MIR 161 262 0 21 36 0 0 chr4 121245041 121245069 -63043593 + AT_rich Low_complexity Low_complexity 1 28 0 966 278 40 67 chr4 121245763 121245914 -63042748 + L2 LINE L2 1855 2009 -1305 3107 115 2 0 chr4 121245914 121246358 -63042304 - L1PB3 LINE L1 0 6154 5710 966 278 40 67 chr4 121246358 121246656 -63042006 + L2 LINE L2 2009 2292 -1022 1411 203 105 47 chr4 121246656 121247124 -63041538 - MLT1D LTR MaLR -2 488 1 1006 300 87 24 chr4 121247124 121247644 -63041018 + L2 LINE L2 2507 3098 -215 2074 100 4 11 chr4 121247644 121247951 -63040711 - AluSc SINE Alu 0 305 1 1006 300 87 24 chr4 121247951 121248182 -63040480 + L2 LINE L2 3098 3313 0 2268 93 0 0 chr4 121249626 121249945 -63038717 + AluY SINE Alu 2 311 0 233 306 83 0 chr4 121250889 121250997 -63037665 + MIR SINE MIR 24 140 -68 5931 154 36 10 chr4 121251146 121253087 -63035575 - L1MA4A LINE L1 -7 6296 4318 1629 105 56 32 chr4 121253093 121253198 -63035464 - L1MA3 LINE L1 0 6305 6204 1873 153 75 29 chr4 121253198 121253545 -63035117 - THE1B LTR MaLR 0 364 2 11592 106 2 0 chr4 121253546 121255123 -63033539 - THE1B-int LTR MaLR 0 1580 1 1803 156 75 29 chr4 121255123 121255470 -63033192 - THE1B LTR MaLR -1 363 1 1629 105 56 32 chr4 121255470 121255646 -63033016 - L1MA3 LINE L1 -100 6205 6014 3251 127 14 2 chr4 121255761 121256281 -63032381 - L1MA3 LINE L1 -524 5781 5256 4297 96 17 12 chr4 121256295 121256886 -63031776 + MER61-int LTR ERV1 4037 4630 -587 10423 176 85 36 chr4 121256886 121256934 -63031728 - L1M4 LINE L1 -3623 3225 3181 492 99 0 0 chr4 121256934 121257005 -63031657 + (TA)n Simple_repeat Simple_repeat 1 71 0 10423 176 85 36 chr4 121257005 121257312 -63031350 - L1M4 LINE L1 -3667 3181 2890 1695 149 6 73 chr4 121257312 121257628 -63031034 - AluSx SINE Alu -17 295 1 10423 176 85 36 chr4 121257628 121259775 -63028887 - L1M4 LINE L1 -3958 2890 554 3840 91 33 0 chr4 121260806 121261356 -63027306 - L1P3 LINE L1 -3827 2634 2067 * 4153 112 38 5 chr4 121261353 121262102 -63026560 - L1P3 LINE L1 -4600 1861 1095 * 21411 85 5 9 chr4 121262098 121265834 -63022828 + L1PA8 LINE L1 2321 6044 -128 2754 193 23 82 chr4 121265857 121266733 -63021929 - LTR5 LTR ERVK -145 824 1 184 299 104 26 chr4 121266736 121266813 -63021849 - MIR SINE MIR -160 102 20 1116 148 137 63 chr4 121267360 121267711 -63020951 - LTR37A LTR ERV1 -1 425 49 909 220 71 73 chr4 121268216 121268735 -63019927 - MER113 DNA MER1_type? -3 518 1 281 289 37 59 chr4 121268740 121268875 -63019787 + MIR3 SINE MIR 15 146 -62 876 258 35 29 chr4 121273449 121273763 -63014899 - MER46C DNA MER2_type -22 316 1 285 332 134 41 chr4 121273763 121274725 -63013937 + L2 LINE L2 2211 3257 -15 1902 157 3 7 chr4 121275635 121275935 -63012727 - AluJb SINE Alu -13 299 1 331 285 93 29 chr4 121277135 121277307 -63011355 + MIR3 SINE MIR 3 185 -23 2354 190 2 70 chr4 121277782 121278324 -63010338 + MLT1D LTR MaLR 1 505 0 676 176 72 8 chr4 121279399 121279524 -63009138 - FLAM_C SINE Alu 0 133 1 399 278 0 0 chr4 121279632 121279729 -63008933 + MIR SINE MIR 118 214 -48 345 284 210 1 chr4 121279865 121280029 -63008633 - MIR SINE MIR -28 234 40 690 308 47 8 chr4 121281639 121281873 -63006789 + MIR SINE MIR 8 250 -12 22 35 0 0 chr4 121281881 121281910 -63006752 + AT_rich Low_complexity Low_complexity 1 29 0 678 233 92 6 chr4 121282011 121282174 -63006488 + MER5B DNA MER1_type 1 177 -1 439 276 171 26 chr4 121282191 121282343 -63006319 + MER5A DNA MER1_type 9 182 -7 455 309 128 32 chr4 121282913 121283256 -63005406 - MLT1I LTR MaLR -4 405 30 425 320 58 35 chr4 121283617 121284045 -63004617 - HAL1 LINE L1 -849 1658 1221 358 303 60 32 chr4 121284073 121284258 -63004404 - L1ME LINE L1 -5107 963 831 1916 204 82 111 chr4 121285438 121285519 -63003143 + L1MC4a LINE L1 6900 6982 -826 198 71 0 0 chr4 121285519 121285547 -63003115 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 1916 204 82 111 chr4 121285547 121286259 -63002403 + L1MC4a LINE L1 6982 7670 -138 1270 231 90 20 chr4 121286259 121286649 -63002013 - LTR52 LTR ERVL 0 421 5 718 200 7 0 chr4 121286652 121286797 -63001865 + L1MD3 LINE L1 7837 7982 -13 2094 92 20 0 chr4 121286861 121287156 -63001506 - L1PA10 LINE L1 0 6168 5868 472 70 0 0 chr4 121287156 121287213 -63001449 + L1PA10 LINE L1 5820 5876 -292 4338 74 52 16 chr4 121287304 121288381 -63000281 - MER11A LTR ERVK 0 1266 1 2250 149 35 56 chr4 121288405 121288921 -62999741 - MLT1D LTR MaLR 0 505 1 468 279 38 44 chr4 121288941 121289099 -62999563 + L1MEd LINE L1 253 409 -5710 3348 185 136 41 chr4 121289119 121290123 -62998539 - L1MC4 LINE L1 -4 8038 6940 532 309 85 44 chr4 121290189 121290966 -62997696 + L1MEd LINE L1 449 1257 -4862 281 283 100 0 chr4 121291082 121291202 -62997460 - MIR SINE MIR 0 262 131 547 317 29 8 chr4 121291239 121291482 -62997180 - HAL1 LINE L1 -1073 1434 1187 205 150 0 50 chr4 121291651 121291691 -62996971 + (CATATA)n Simple_repeat Simple_repeat 3 40 0 21 0 0 0 chr4 121291892 121291913 -62996749 + AT_rich Low_complexity Low_complexity 1 21 0 358 323 75 53 chr4 121292044 121292270 -62996392 + HAL1 LINE L1 1113 1343 -1164 21 57 0 0 chr4 121292632 121292667 -62995995 + AT_rich Low_complexity Low_complexity 1 35 0 386 248 132 89 chr4 121292712 121293015 -62995647 + MLT1I LTR MaLR 9 324 -85 6661 123 51 33 chr4 121293176 121294383 -62994279 - Tigger3b DNA MER2_type -2 1229 1 409 303 82 56 chr4 121294431 121294787 -62993875 + L1ME4a LINE L1 4909 5273 -873 587 266 93 68 chr4 121294968 121295514 -62993148 + L1ME4a LINE L1 5420 5979 -142 308 322 62 40 chr4 121295859 121296036 -62992626 + MIR SINE MIR 53 233 -29 2372 121 118 12 chr4 121297248 121297653 -62991009 - MER83 LTR ERV1 0 448 1 25 51 0 0 chr4 121297662 121297701 -62990961 + AT_rich Low_complexity Low_complexity 1 39 0 1702 196 84 18 chr4 121297900 121298338 -62990324 + MLT1C LTR MaLR 1 467 0 344 265 65 71 chr4 121298352 121298522 -62990140 + L1MEd LINE L1 9 177 -5942 33 25 0 0 chr4 121298538 121298578 -62990084 + AT_rich Low_complexity Low_complexity 1 40 0 2479 156 5 43 chr4 121299050 121299492 -62989170 - L1M1 LINE L1 -5968 1597 1173 6068 142 26 8 chr4 121299767 121301347 -62987315 - L1PB2 LINE L1 -2 6149 4542 474 287 118 28 chr4 121302134 121302388 -62986274 + HAL1b LINE L1 296 572 -776 641 257 83 43 chr4 121302396 121302793 -62985869 + HAL1b LINE L1 623 1035 -313 * 1619 149 25 34 chr4 121302792 121303113 -62985549 - L1MA8 LINE L1 -191 6100 5783 327 266 0 28 chr4 121303113 121303256 -62985406 + (TG)n Simple_repeat Simple_repeat 1 139 0 1476 153 9 36 chr4 121303256 121303551 -62985111 - L1MD1 LINE L1 -401 5841 5556 447 137 22 144 chr4 121303537 121303676 -62984986 + L1MA8 LINE L1 6097 6218 -73 * 25 51 0 0 chr4 121303789 121303828 -62984834 + AT_rich Low_complexity Low_complexity 1 39 0 237 65 0 0 chr4 121303837 121303868 -62984794 + (TG)n Simple_repeat Simple_repeat 2 32 0 232 347 46 36 chr4 121304100 121304266 -62984396 - L2 LINE L2 -1317 1997 1827 3007 173 50 9 chr4 121304266 121304844 -62983818 - MER7C DNA MER2_type 0 602 1 232 347 46 36 chr4 121304844 121304873 -62983789 - L2 LINE L2 -1487 1827 1800 188 355 98 49 chr4 121305232 121305559 -62983103 - L3 LINE CR1 -1157 420 78 25 0 0 0 chr4 121305824 121305849 -62982813 + AT_rich Low_complexity Low_complexity 1 25 0 368 127 0 0 chr4 121305858 121305913 -62982749 + MSTA LTR MaLR 1 55 -373 331 339 31 0 chr4 121305916 121306046 -62982616 + MIR SINE MIR 53 186 -76 235 256 0 0 chr4 121307176 121307219 -62981443 + L2 LINE L2 3207 3249 -23 7983 219 19 9 chr4 121307219 121309149 -62979513 + L1 LINE L1 3291 5238 -908 3026 74 62 2 chr4 121309150 121309190 -62979472 - MLT2A1 LTR ERVL 0 444 408 378 61 0 0 chr4 121309190 121309239 -62979423 + (TA)n Simple_repeat Simple_repeat 1 49 0 3026 74 62 2 chr4 121309239 121309615 -62979047 - MLT2A1 LTR ERVL -36 408 3 1072 98 7 0 chr4 121309617 121309770 -62978892 - HERVL-A1 LTR ERVL 0 5654 5501 4961 76 2 0 chr4 121309870 121310491 -62978171 - HERVL-A1 LTR ERVL -713 4941 4320 2458 72 15 12 chr4 121310488 121310823 -62977839 + MER61A-int LTR ERV1 4878 5213 -4 * 1732 192 18 12 chr4 121310830 121311169 -62977493 + MER61A LTR ERV1 3 343 0 3388 155 27 22 chr4 121311172 121311793 -62976869 + MSTB-int LTR MaLR 1023 1646 -5 2501 150 24 7 chr4 121311798 121312217 -62976445 + MSTB LTR MaLR 1 426 0 2469 169 40 4 chr4 121314265 121314744 -62973918 - L1MB7 LINE L1 0 6184 5689 756 309 89 51 chr4 121314895 121315423 -62973239 - L2 LINE L2 -5 3267 2737 3562 199 24 12 chr4 121315832 121316506 -62972156 - L1M1 LINE L1 -6842 723 42 14571 174 27 114 chr4 121316507 121317404 -62971258 - L1PA15-16 LINE L1 -1752 5097 4123 2272 69 0 7 chr4 121317404 121317726 -62970936 - AluY SINE Alu 0 311 1 14571 174 27 114 chr4 121317726 121322405 -62966257 - L1PA15-16 LINE L1 -2726 4123 1 292 185 31 15 chr4 121322871 121322936 -62965726 + MLT1I LTR MaLR 325 390 -19 435 288 84 9 chr4 121322946 121323185 -62965477 + L1MC/D LINE L1 5551 5806 -362 279 0 0 0 chr4 121323360 121323391 -62965271 + (CA)n Simple_repeat Simple_repeat 2 32 0 244 257 229 7 chr4 121323954 121324094 -62964568 - MIR SINE MIR 0 262 92 358 209 9 9 chr4 121327094 121327199 -62961463 + CT-rich Low_complexity Low_complexity 4 108 0 310 226 20 41 chr4 121327772 121327918 -62960744 + (TCTA)n Simple_repeat Simple_repeat 4 146 0 * 348 222 7 28 chr4 121327886 121328030 -62960632 + (TA)n Simple_repeat Simple_repeat 1 141 0 216 298 130 30 chr4 121328513 121328644 -62960018 - L3 LINE CR1 -1005 572 429 310 193 96 12 chr4 121328777 121328860 -62959802 + L1ME3 LINE L1 2266 2355 -3791 548 286 77 20 chr4 121328958 121329114 -62959548 + L1ME3 LINE L1 4176 4322 -1840 279 0 0 0 chr4 121329114 121329145 -62959517 + (TG)n Simple_repeat Simple_repeat 1 31 0 548 286 77 20 chr4 121329145 121329394 -62959268 + L1ME3 LINE L1 4322 4555 -1607 228 35 0 0 chr4 121329394 121329423 -62959239 + (TG)n Simple_repeat Simple_repeat 1 29 0 548 286 77 20 chr4 121329423 121330283 -62958379 + L1ME3 LINE L1 4555 5576 -586 1000 279 56 3 chr4 121330290 121330613 -62958049 + L1ME3 LINE L1 5821 6160 -2 22 35 0 0 chr4 121330657 121330686 -62957976 + AT_rich Low_complexity Low_complexity 1 29 0 1224 204 32 21 chr4 121330746 121331114 -62957548 - L1MA9 LINE L1 -31 6281 5798 294 29 0 0 chr4 121331114 121331149 -62957513 + (TC)n Simple_repeat Simple_repeat 2 36 0 207 0 0 0 chr4 121331148 121331171 -62957491 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 10340 79 7 10 chr4 121331307 121332863 -62955799 - L1P3 LINE L1 -671 5501 3942 5501 96 1 0 chr4 121332864 121333656 -62955006 + L1P3 LINE L1 3146 3938 -2208 3896 163 27 3 chr4 121333663 121334834 -62953828 - L1MA9 LINE L1 -538 5774 4577 572 313 104 13 chr4 121335250 121335480 -62953182 + MIR SINE MIR 12 262 0 271 310 109 11 chr4 121335878 121336062 -62952600 - L2 LINE L2 0 3313 3112 426 308 0 17 chr4 121336103 121336220 -62952442 + Zaphod DNA AcHobo 1 115 -3916 900 241 43 0 chr4 121336260 121336467 -62952195 + MER58A DNA MER1_type 1 216 -8 525 220 17 35 chr4 121337008 121337181 -62951481 - L1MD3 LINE L1 -16 7979 7810 198 0 0 0 chr4 121387181 121387203 -62901459 + (TTA)n Simple_repeat Simple_repeat 3 24 0 4852 30 2 0 chr4 121387203 121387766 -62900896 - L1PA5 LINE L1 -18 6136 5573 253 247 82 36 chr4 121387766 121387960 -62900702 - L1M4 LINE L1 -1607 4539 4337 304 204 140 0 chr4 121388305 121388398 -62900264 + L1MD3 LINE L1 7879 7984 -11 2280 220 66 3 chr4 121388412 121388645 -62900017 - L1MD2 LINE L1 -448 5911 5694 1642 110 13 0 chr4 121388645 121388873 -62899789 - AluSq SINE Alu -9 304 74 2280 220 66 3 chr4 121388873 121389316 -62899346 - L1MD2 LINE L1 -665 5694 5193 198 303 81 10 chr4 121389470 121389569 -62899093 + L2 LINE L2 2669 2774 -540 2548 40 0 7 chr4 121389958 121390260 -62898402 + AluY SINE Alu 1 300 -11 6280 182 26 12 chr4 121390603 121391599 -62897063 - L1M3 LINE L1 -358 5810 4774 2203 117 0 3 chr4 121391599 121391897 -62896765 - AluSx SINE Alu -15 297 1 6280 182 26 12 chr4 121391897 121392705 -62895957 - L1M3 LINE L1 -1394 4774 3979 2183 84 4 11 chr4 121392807 121393106 -62895556 + AluSx SINE Alu 11 307 0 202 143 0 24 chr4 121393144 121393186 -62895476 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 1635 156 16 44 chr4 121393617 121393932 -62894730 + AluJo SINE Alu 1 306 -6 900 237 47 12 chr4 121393952 121394205 -62894457 + MLT2B1 LTR ERVL 253 514 -6 2232 222 91 62 chr4 121394241 121395025 -62893637 - MER21B LTR ERV1 -57 806 1 663 333 77 5 chr4 121395229 121395826 -62892836 - L1M4 LINE L1 -1908 4238 3599 1223 181 87 50 chr4 121397269 121397590 -62891072 + MLT1A1 LTR MaLR 1 333 -32 254 100 0 0 chr4 121397690 121397730 -62890932 + L1MA9 LINE L1 6267 6306 -6 312 241 128 38 chr4 121398120 121398253 -62890409 - L2 LINE L2 -996 2318 2174 458 198 25 25 chr4 121398938 121399059 -62889603 - L1MC3 LINE L1 -12 7773 7653 2257 94 7 0 chr4 121399494 121399781 -62888881 + AluSg SINE Alu 1 289 -21 36 23 0 0 chr4 121399880 121399923 -62888739 + AT_rich Low_complexity Low_complexity 1 43 0 1537 61 0 33 chr4 121399923 121400136 -62888526 - L1PA5 LINE L1 -8 6146 5941 28 0 0 0 chr4 121400204 121400232 -62888430 + AT_rich Low_complexity Low_complexity 1 28 0 2178 121 0 10 chr4 121400916 121401223 -62887439 - AluSx SINE Alu -6 306 3 267 292 104 10 chr4 121401368 121401464 -62887198 - MIR SINE MIR -40 222 118 344 186 127 0 chr4 121402195 121402313 -62886349 + L1M4 LINE L1 3043 3175 -2971 * 396 295 14 0 chr4 121402309 121402448 -62886214 + L1MA10 LINE L1 6164 6304 -30 354 312 52 17 chr4 121402468 121402685 -62885977 + L1ME4a LINE L1 5495 5717 -453 300 53 0 0 chr4 121402833 121402871 -62885791 + (TG)n Simple_repeat Simple_repeat 1 38 0 2003 85 8 0 chr4 121403281 121403539 -62885123 + AluSp SINE Alu 1 260 -53 416 19 19 0 chr4 121403539 121403592 -62885070 + (TAA)n Simple_repeat Simple_repeat 1 54 0 240 281 56 22 chr4 121403790 121403879 -62884783 - L2 LINE L2 0 3272 3181 1726 87 25 0 chr4 121404107 121404349 -62884313 + L1PA11 LINE L1 5927 6174 0 22 35 0 0 chr4 121405111 121405140 -62883522 + AT_rich Low_complexity Low_complexity 1 29 0 6870 56 62 19 chr4 121405173 121406088 -62882574 - L1PA6 LINE L1 -1 6153 5235 364 277 108 22 chr4 121406896 121407210 -62881452 + L1ME4a LINE L1 5770 6110 -11 1291 188 75 28 chr4 121407217 121407499 -62881163 - AluJo SINE Alu -7 295 1 333 275 58 0 chr4 121407740 121407860 -62880802 + L1ME4a LINE L1 5984 6110 -11 493 156 25 25 chr4 121408158 121408280 -62880382 + L1MA4A LINE L1 6000 6121 -182 322 211 22 0 chr4 121408285 121408375 -62880287 + L1MA4A LINE L1 6189 6280 -23 387 316 151 29 chr4 121409556 121409901 -62878761 + HAL1b LINE L1 309 695 -653 315 255 57 75 chr4 121410016 121410122 -62878540 - L2 LINE L2 0 3272 3169 1426 119 10 0 chr4 121410450 121410643 -62878019 + AluSq SINE Alu 2 196 -117 294 320 147 20 chr4 121410816 121410901 -62877761 - MIR SINE MIR -21 241 168 1826 160 34 3 chr4 121410901 121411195 -62877467 - AluSx SINE Alu -9 303 1 294 320 147 20 chr4 121411195 121411306 -62877356 - MIR SINE MIR -94 168 20 406 299 18 0 chr4 121411750 121411890 -62876772 - MIR SINE MIR -62 146 10 271 366 195 8 chr4 121411900 121412157 -62876505 - L2 LINE L2 -18 3254 2950 6690 80 0 0 chr4 121412287 121412509 -62876153 - L1PA8 LINE L1 0 6172 5951 2336 78 9 50 chr4 121412509 121412830 -62875832 - AluY SINE Alu -3 308 1 6690 80 0 0 chr4 121412830 121413998 -62874664 - L1PA8 LINE L1 -220 5952 4793 255 211 0 29 chr4 121414112 121414216 -62874446 + (TA)n Simple_repeat Simple_repeat 1 101 0 530 187 190 10 chr4 121414305 121414463 -62874199 + MER20 DNA MER1_type 36 219 0 35 24 0 0 chr4 121415182 121415224 -62873438 + AT_rich Low_complexity Low_complexity 1 42 0 279 187 27 13 chr4 121415592 121415667 -62872995 + MER112 DNA MER1_type 94 169 -91 352 217 22 11 chr4 121415703 121415795 -62872867 - MER94 DNA DNA -2 132 40 19973 91 4 3 chr4 121415953 121419603 -62869059 + L1PA7 LINE L1 2511 6153 -1 2199 124 7 0 chr4 121419900 121420199 -62868463 + AluSx SINE Alu 1 301 -11 2228 112 7 0 chr4 121421282 121421587 -62867075 + AluSq SINE Alu 7 313 0 758 139 17 17 chr4 121421587 121421767 -62866895 + GA-rich Low_complexity Low_complexity 1 180 0 618 297 65 4 chr4 121421780 121422009 -62866653 - L2 LINE L2 -1035 2279 2037 1450 273 63 27 chr4 121422011 121422605 -62866057 - MLT1G LTR MaLR -6 584 4 316 261 11 0 chr4 121422608 121422700 -62865962 - L2 LINE L2 -1332 1982 1890 299 432 26 26 chr4 121422703 121422932 -62865730 + L2 LINE L2 3042 3270 -2 241 303 40 0 chr4 121423148 121423224 -62865438 - MLT1J LTR MaLR -112 399 321 977 305 77 2 chr4 121423346 121423881 -62864781 + L1ME3A LINE L1 5306 5880 -290 229 268 14 14 chr4 121424098 121424169 -62864493 + (TA)n Simple_repeat Simple_repeat 2 72 0 213 280 40 0 chr4 121424179 121424229 -62864433 + L2 LINE L2 3209 3260 -12 5098 133 30 21 chr4 121424327 121424558 -62864104 + L1MC1 LINE L1 5376 5604 -729 2214 113 137 11 chr4 121424558 121424938 -62863724 + MSTA LTR MaLR 1 428 0 5098 133 30 21 chr4 121424938 121425650 -62863012 + L1MC1 LINE L1 5604 6327 -6 368 274 116 44 chr4 121425651 121426200 -62862462 - L1ME3A LINE L1 -240 5922 5303 714 247 115 62 chr4 121426208 121427104 -62861558 - L1ME3A LINE L1 -894 5252 4310 711 276 69 37 chr4 121427292 121427868 -62860794 - L1ME3A LINE L1 -1905 4241 3649 309 233 81 12 chr4 121427918 121428004 -62860658 - L1ME3A LINE L1 -2608 3538 3447 29 0 0 0 chr4 121428177 121428206 -62860456 + AT_rich Low_complexity Low_complexity 1 29 0 267 280 100 3 chr4 121428378 121428488 -62860174 + MIR3 SINE MIR 59 155 -53 1009 179 14 14 chr4 121428631 121428843 -62859819 - L1PB4 LINE L1 -7 6149 5938 1538 153 128 0 chr4 121428843 121429147 -62859515 - L1MC1 LINE L1 -6 6327 5981 327 288 22 50 chr4 121429358 121429497 -62859165 - L2 LINE L2 -220 3052 2918 208 331 100 38 chr4 121429526 121429686 -62858976 - L2 LINE L2 -460 2854 2685 276 298 44 0 chr4 121430108 121430222 -62858440 + LTR67 LTR ERVL 432 550 -7 1183 120 6 0 chr4 121430673 121430840 -62857822 + AluSg/x SINE Alu 130 297 -13 297 269 35 35 chr4 121431565 121431710 -62856952 - LTR67 LTR ERVL -410 147 3 365 323 40 30 chr4 121432350 121432551 -62856111 - LTR67 LTR ERVL -8 549 347 303 346 85 0 chr4 121433421 121433609 -62855053 - ERVL LTR ERVL -3758 2006 1803 295 240 153 40 chr4 121434432 121434582 -62854080 - MIR SINE MIR -84 178 12 267 270 43 17 chr4 121435231 121435346 -62853316 - MER113 DNA MER1_type? -132 389 272 2059 176 3 3 chr4 121435982 121436351 -62852311 + MER66B LTR ERV1 1 369 -117 370 387 38 31 chr4 121436684 121436976 -62851686 + L2 LINE L2 2555 2848 -466 1866 186 61 16 chr4 121437229 121437267 -62851395 + MLT1C LTR MaLR 6 41 -426 2155 75 142 9 chr4 121437267 121437598 -62851064 + THE1C LTR MaLR 1 375 0 1866 186 61 16 chr4 121437598 121438001 -62850661 + MLT1C LTR MaLR 41 467 0 284 209 60 45 chr4 121438441 121438575 -62850087 - L1MC5 LINE L1 -187 7774 7639 273 239 78 35 chr4 121438838 121438980 -62849682 + Charlie8 DNA MER1_type 43 190 -2227 2391 93 0 3 chr4 121439390 121439702 -62848960 - AluY SINE Alu 0 311 1 1746 209 66 36 chr4 121440255 121440700 -62847962 - MER31A LTR ERV1 -5 656 1 1580 182 71 7 chr4 121440991 121441271 -62847391 - AluJb SINE Alu -14 298 1 290 217 0 0 chr4 121441358 121441418 -62847244 - MLT1K LTR MaLR -6 582 523 610 260 42 16 chr4 121441428 121441620 -62847042 - LTR67 LTR ERVL -9 548 352 1038 179 0 77 chr4 121442012 121442246 -62846416 - MER20 DNA MER1_type 0 219 4 558 293 62 26 chr4 121442285 121442558 -62846104 + L2 LINE L2 2230 2512 -802 2178 78 3 10 chr4 121444360 121444654 -62844008 - AluY SINE Alu 0 311 20 1198 116 0 0 chr4 121444654 121444917 -62843745 - L1P5 LINE L1 -712 5439 5177 458 266 83 46 chr4 121445043 121445284 -62843378 - L1 LINE L1 -1700 4446 4197 5388 92 21 9 chr4 121446037 121446851 -62841811 - L1PA13 LINE L1 -2 6161 5338 2076 127 3 32 chr4 121447005 121447313 -62841349 - AluSp SINE Alu -14 299 1 514 234 59 103 chr4 121447753 121448026 -62840636 - MIR SINE MIR 0 262 2 1553 150 4 4 chr4 121448755 121449028 -62839634 - MER34B LTR ERV1 -20 545 273 767 98 35 98 chr4 121449033 121449206 -62839456 - MER34B LTR ERV1 -400 165 4 199 400 76 0 chr4 121449221 121449326 -62839336 - L2 LINE L2 -1 3271 3159 215 100 0 25 chr4 121449569 121449609 -62839053 + (CATA)n Simple_repeat Simple_repeat 4 42 0 2240 115 24 0 chr4 121449636 121449932 -62838730 - AluSx SINE Alu -9 303 1 550 198 0 0 chr4 121451181 121451287 -62837375 + MLT1B LTR MaLR 76 181 -209 10118 149 27 76 chr4 121451295 121453607 -62835055 + L1P LINE L1 12 2211 -3935 328 371 0 28 chr4 121453792 121453970 -62834692 - L2 LINE L2 -592 2722 2550 337 308 0 0 chr4 121454764 121454842 -62833820 - L2 LINE L2 0 3313 3236 428 273 136 60 chr4 121454855 121455207 -62833455 + MLT1J2 LTR MaLR 43 421 -29 318 352 37 0 chr4 121455224 121455332 -62833330 - L2 LINE L2 -377 2937 2826 1642 194 26 0 chr4 121455333 121455643 -62833019 - Tigger6 DNA MER2_type -764 319 2 886 256 96 116 chr4 121455671 121456256 -62832406 - L2 LINE L2 -1567 1747 1175 195 42 0 0 chr4 121456983 121457007 -62831655 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 258 32 0 0 chr4 121457059 121457090 -62831572 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 534 329 24 97 chr4 121457130 121457358 -62831304 + L2 LINE L2 2883 3073 -199 2156 139 0 0 chr4 121457358 121457668 -62830994 + AluSx SINE Alu 1 310 -2 534 329 24 97 chr4 121457668 121457819 -62830843 + L2 LINE L2 3073 3234 -38 266 291 40 66 chr4 121458031 121458182 -62830480 + MIR3 SINE MIR 33 179 -29 708 133 0 0 chr4 121459131 121459236 -62829426 + FLAM_C SINE Alu 22 126 -17 2342 108 55 21 chr4 121459378 121459757 -62828905 + MSTC LTR MaLR 1 392 -36 339 109 94 0 chr4 121459757 121459821 -62828841 + MSTC LTR MaLR 354 423 -5 2255 226 78 104 chr4 121460466 121460986 -62827676 + L2 LINE L2 1982 2514 -799 2033 145 3 0 chr4 121460986 121461276 -62827386 + AluSx SINE Alu 5 295 -17 2255 226 78 104 chr4 121461276 121461946 -62826716 + L2 LINE L2 2514 3146 -167 457 260 10 12 chr4 121461971 121462122 -62826540 + HERVL LTR ERVL 4706 4817 -837 210 315 101 0 chr4 121462513 121462602 -62826060 + MIR SINE MIR 149 246 -16 2272 99 3 16 chr4 121462790 121463103 -62825559 + AluSc SINE Alu 1 309 0 331 219 276 0 chr4 121464310 121464415 -62824247 - MIR SINE MIR -108 154 21 244 344 62 39 chr4 121464834 121464962 -62823700 + L3 LINE CR1 194 324 -1253 673 326 51 27 chr4 121465599 121465933 -62822729 + L3 LINE CR1 409 750 -827 359 254 55 0 chr4 121466118 121466228 -62822434 + L1MD3 LINE L1 6820 6935 -1060 1116 254 57 47 chr4 121466280 121467003 -62821659 + L2 LINE L2 2584 3313 0 226 261 134 38 chr4 121467086 121467243 -62821419 - L1ME LINE L1 -464 5698 5527 346 271 147 0 chr4 121467265 121467394 -62821268 + L3 LINE CR1 1089 1236 -341 7323 49 0 0 chr4 121468042 121468974 -62819688 - L1PA6 LINE L1 0 6154 5223 432 223 46 15 chr4 121470217 121470347 -62818315 + MER97c DNA MER1_type? 45 178 -912 323 273 29 105 chr4 121470557 121470729 -62817933 + MIR3 SINE MIR 35 193 -15 249 298 106 11 chr4 121470758 121470852 -62817810 + MIR SINE MIR 25 127 -81 22 35 0 0 chr4 121471273 121471302 -62817360 + AT_rich Low_complexity Low_complexity 1 29 0 748 230 63 40 chr4 121471509 121471761 -62816901 + MIR SINE MIR 2 259 -3 199 333 0 0 chr4 121471993 121472059 -62816603 + L2 LINE L2 2990 3055 -217 189 342 60 68 chr4 121472187 121472304 -62816358 + L2 LINE L2 3122 3237 -35 315 337 96 26 chr4 121472466 121472769 -62815893 - L2 LINE L2 -1023 2291 1968 208 291 51 0 chr4 121472776 121472855 -62815807 - L2 LINE L2 -2 3270 3188 2110 130 8 72 chr4 121474131 121474522 -62814140 + MER47A DNA MER2_type 1 366 0 421 298 19 42 chr4 121474959 121475174 -62813488 + MLT1K LTR MaLR 379 588 0 410 312 101 0 chr4 121475785 121475923 -62812739 - MIR SINE MIR -110 152 1 715 208 6 19 chr4 121479497 121479656 -62809006 - MLT1D LTR MaLR -1 504 348 669 226 68 0 chr4 121479640 121479817 -62808845 - MLT1D LTR MaLR -315 190 2 * 3089 158 27 32 chr4 121479861 121480487 -62808175 + L1MC2 LINE L1 5722 6344 0 659 202 25 0 chr4 121480991 121481110 -62807552 + FLAM_A SINE Alu 1 122 -11 2188 93 3 35 chr4 121481588 121481900 -62806762 - AluSg1 SINE Alu -7 302 1 296 229 0 29 chr4 121482998 121483068 -62805594 - L2 LINE L2 -22 3291 3224 2563 55 0 10 chr4 121483237 121483547 -62805115 + AluY SINE Alu 1 307 -4 225 204 0 23 chr4 121484058 121484102 -62804560 + Alu SINE Alu 84 126 -176 728 167 25 0 chr4 121484124 121484244 -62804418 + FLAM_C SINE Alu 1 123 -20 1106 268 66 8 chr4 121484275 121484675 -62803987 + L1ME3A LINE L1 5707 6127 -43 33179 98 11 13 chr4 121484675 121489811 -62798851 + L1P LINE L1 10 5136 -1010 494 302 119 20 chr4 121489911 121490113 -62798549 - MIR SINE MIR -40 222 1 250 377 138 8 chr4 121490135 121490265 -62798397 - L2 LINE L2 -1 3271 3125 2271 104 3 7 chr4 121490847 121491155 -62797507 - AluSx SINE Alu -5 307 1 682 208 0 0 chr4 121491657 121491777 -62796885 - FLAM_A SINE Alu -13 120 1 321 309 42 42 chr4 121492259 121492424 -62796238 - L3 LINE CR1 -233 1344 1180 2339 101 0 7 chr4 121492927 121493235 -62795427 - AluSx SINE Alu -6 306 1 3038 190 32 3 chr4 121493505 121494158 -62794504 - L1MC3 LINE L1 -1 7784 7113 485 204 33 66 chr4 121494156 121494337 -62794325 - L1M4 LINE L1 -1141 5005 4831 * 2019 97 52 0 chr4 121494353 121494649 -62794013 - AluSx SINE Alu 0 310 1 306 328 45 22 chr4 121494850 121494984 -62793678 - MIR3 SINE MIR -7 201 65 1604 164 13 95 chr4 121495505 121495884 -62792778 - MLT1A1 LTR MaLR -17 348 1 1914 158 0 3 chr4 121496233 121496524 -62792138 + AluJb SINE Alu 1 290 -22 388 261 9 27 chr4 121496531 121496642 -62792020 - MIR SINE MIR -14 248 140 1693 156 25 7 chr4 121497461 121497743 -62790919 + AluJb SINE Alu 1 287 -25 696 271 81 36 chr4 121497842 121498089 -62790573 + MIR SINE MIR 5 262 0 2329 145 20 10 chr4 121498451 121498857 -62789805 - L1MC1 LINE L1 0 6333 5924 32 26 0 0 chr4 121499780 121499819 -62788843 + AT_rich Low_complexity Low_complexity 1 39 0 1729 151 145 20 chr4 121499977 121500329 -62788333 + MSTD LTR MaLR 1 396 0 301 256 13 51 chr4 121500879 121500957 -62787705 - L2 LINE L2 -4 3309 3235 409 206 83 115 chr4 121501039 121501257 -62787405 + HAL1 LINE L1 1 211 -2296 207 87 0 65 chr4 121501434 121501480 -62787182 + (CAAAAA)n Simple_repeat Simple_repeat 3 45 0 412 214 11 0 chr4 121501518 121501607 -62787055 + HAL1 LINE L1 796 885 -1622 1679 242 73 101 chr4 121501679 121502536 -62786126 + HAL1 LINE L1 1091 1893 -614 1692 193 16 7 chr4 121502536 121502841 -62785821 - AluJb SINE Alu -4 308 1 1679 242 73 101 chr4 121502841 121503431 -62785231 + HAL1 LINE L1 1893 2498 -9 532 189 49 0 chr4 121504119 121504241 -62784421 + MER65B LTR ERV1 1 128 -403 2160 116 17 9 chr4 121504282 121504628 -62784034 - L1PA13 LINE L1 -3 6160 5812 369 229 42 0 chr4 121505850 121505994 -62782668 + (TA)n Simple_repeat Simple_repeat 2 151 0 37 90 0 0 chr4 121505996 121506096 -62782566 + AT_rich Low_complexity Low_complexity 1 100 0 234 220 0 0 chr4 121506106 121506156 -62782506 - L1ME2 LINE L1 -60 6104 6055 227 154 0 0 chr4 121506156 121506195 -62782467 - MER3 DNA MER1_type -160 49 11 723 223 92 71 chr4 121506198 121506481 -62782181 - L1ME2 LINE L1 -150 6016 5728 465 191 15 92 chr4 121506949 121507080 -62781582 - MLT1F1 LTR MaLR 0 567 447 2155 100 19 16 chr4 121507588 121507899 -62780763 - AluSx SINE Alu 0 312 1 1352 284 18 38 chr4 121508161 121508374 -62780288 - MLT2F LTR ERVL -6 657 441 1627 243 47 11 chr4 121508374 121508823 -62779839 - LTR40c LTR ERVL 0 465 1 1352 284 18 38 chr4 121508823 121509056 -62779606 - MLT2F LTR ERVL -222 441 220 716 103 0 0 chr4 121509058 121509165 -62779497 - MER57A LTR ERV1 -296 107 1 2376 218 77 2 chr4 121509205 121509728 -62778934 - MER68 LTR ERV1 0 562 1 23 0 0 0 chr4 121510415 121510438 -62778224 + AT_rich Low_complexity Low_complexity 1 23 0 245 239 0 42 chr4 121511239 121511310 -62777352 + CT-rich Low_complexity Low_complexity 1 68 0 1101 131 0 0 chr4 121511396 121511549 -62777113 + AluSx SINE Alu 1 153 -159 381 242 145 48 chr4 121512211 121512397 -62776265 + MLT1L LTR MaLR 10 213 -402 486 300 121 4 chr4 121512451 121512691 -62775971 + MLT1L LTR MaLR 321 588 -27 542 218 65 32 chr4 121513064 121513280 -62775382 - L1ME2 LINE L1 -219 5951 5729 1032 285 64 7 chr4 121513312 121513719 -62774943 - L1ME4a LINE L1 -206 5915 5486 528 255 90 63 chr4 121513940 121514350 -62774312 + MLT1J2 LTR MaLR 1 450 0 383 358 105 13 chr4 121514351 121514580 -62774082 - MIR SINE MIR -10 252 3 21 36 0 0 chr4 121514778 121514806 -62773856 + AT_rich Low_complexity Low_complexity 1 28 0 277 325 13 0 chr4 121516127 121516204 -62772458 - L2 LINE L2 0 3313 3236 700 219 143 9 chr4 121516211 121516421 -62772241 - MIR SINE MIR -18 244 7 1962 144 35 0 chr4 121516750 121517035 -62771627 + AluJb SINE Alu 1 295 -17 25 31 0 0 chr4 121517608 121517640 -62771022 + AT_rich Low_complexity Low_complexity 1 32 0 2187 120 0 0 chr4 121518223 121518522 -62770140 + AluSg SINE Alu 1 299 -11 648 225 31 63 chr4 121518528 121518750 -62769912 - MER106A DNA MER1_type -17 219 5 1747 186 64 6 chr4 121518781 121519126 -62769536 - MLT1A1 LTR MaLR 0 365 1 469 195 24 24 chr4 121520075 121520198 -62768464 + MER106A DNA MER1_type 114 236 0 1520 178 24 0 chr4 121520349 121520636 -62768026 + MSTB1 LTR MaLR 139 432 0 289 250 87 10 chr4 121520666 121520770 -62767892 + HAL1 LINE L1 1824 1935 -572 431 281 11 68 chr4 121521224 121521505 -62767157 + HAL1 LINE L1 2241 2505 -2 2004 102 7 0 chr4 121522258 121522542 -62766120 + L1PA10 LINE L1 5882 6167 -1 615 62 0 0 chr4 121522671 121522751 -62765911 + (CA)n Simple_repeat Simple_repeat 2 81 0 233 295 48 0 chr4 121522875 121522980 -62765682 + L1MCc LINE L1 18 127 -6296 2047 184 48 18 chr4 121523007 121523446 -62765216 + MLT1D LTR MaLR 22 473 -32 1958 238 35 48 chr4 121523507 121523854 -62764808 + L1ME1 LINE L1 5526 5876 -458 2223 127 10 0 chr4 121523854 121524161 -62764501 + AluSx SINE Alu 1 310 -2 1958 238 35 48 chr4 121524161 121524473 -62764189 + L1ME1 LINE L1 5876 6334 0 1294 289 82 25 chr4 121524784 121525594 -62763068 - L1MC4a LINE L1 -1693 6115 5260 368 305 113 31 chr4 121525805 121526061 -62762601 - L1MC4a LINE L1 -1103 5043 4767 1535 54 10 10 chr4 121526293 121526497 -62762165 - L1PA6 LINE L1 -2 6152 5949 4496 60 40 13 chr4 121526597 121527486 -62761176 - L1PA6 LINE L1 -508 5646 4740 * 5555 56 7 12 chr4 121527482 121528246 -62760416 + L1PA6 LINE L1 3971 4730 -1416 1276 224 22 19 chr4 121528457 121528769 -62759893 - L1MC/D LINE L1 -2181 5627 5315 11937 128 62 16 chr4 121528806 121529028 -62759634 - Tigger1 DNA MER2_type -164 2254 2044 1278 172 95 33 chr4 121529028 121529301 -62759361 - AluJo SINE Alu -10 292 3 11937 128 62 16 chr4 121529301 121529709 -62758953 - Tigger1 DNA MER2_type -374 2044 1656 1969 143 122 10 chr4 121529709 121530094 -62758568 - MSTA LTR MaLR 0 428 1 11937 128 62 16 chr4 121530094 121531272 -62757390 - Tigger1 DNA MER2_type -762 1656 329 240 35 0 0 chr4 121531272 121531301 -62757361 + (GA)n Simple_repeat Simple_repeat 2 30 0 11937 128 62 16 chr4 121531301 121531624 -62757038 - Tigger1 DNA MER2_type -2089 329 22 343 122 0 0 chr4 121532042 121532114 -62756548 + AluSp/q SINE Alu 237 308 0 1384 318 14 0 chr4 121532179 121532663 -62755999 - ERVL LTR ERVL -3081 2683 2193 759 144 0 0 chr4 121532771 121532882 -62755780 - FLAM_C SINE Alu -32 111 1 414 319 137 23 chr4 121532987 121533382 -62755280 + LTR16A LTR ERVL 1 440 -10 403 318 119 33 chr4 121533390 121533811 -62754851 - L1MC/D LINE L1 -1074 5072 4616 29 28 0 0 chr4 121533887 121533923 -62754739 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr4 121534799 121534821 -62753841 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr4 121537904 121537940 -62750722 + AT_rich Low_complexity Low_complexity 1 36 0 411 256 188 47 chr4 121538698 121539028 -62749634 + MLT1J LTR MaLR 217 510 -1 288 146 21 0 chr4 121540019 121540067 -62748595 + L2 LINE L2 3257 3305 -8 28 48 0 0 chr4 121540498 121540540 -62748122 + AT_rich Low_complexity Low_complexity 1 42 0 1261 170 5 0 chr4 121540746 121540946 -62747716 + AluSq SINE Alu 1 201 -112 281 290 30 20 chr4 121542393 121542493 -62746169 + MER5A DNA MER1_type 26 126 -63 2650 149 48 34 chr4 121546047 121546571 -62742091 - L1MA9 LINE L1 0 6312 5778 249 57 0 0 chr4 121546571 121546606 -62742056 + (TG)n Simple_repeat Simple_repeat 2 36 0 2650 149 48 34 chr4 121546606 121546643 -62742019 - L1MA9 LINE L1 -534 5778 5743 213 206 40 143 chr4 121546813 121546939 -62741723 + L2 LINE L2 3137 3249 -23 231 36 0 0 chr4 121547855 121547883 -62740779 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 210 328 90 55 chr4 121549396 121549652 -62739010 - L2 LINE L2 -182 3090 2826 1570 101 41 0 chr4 121549988 121550206 -62738456 - MER30 DNA MER1_type 0 230 4 2341 71 24 3 chr4 121551092 121551387 -62737275 + AluY SINE Alu 1 301 -10 1830 164 84 53 chr4 121551849 121552005 -62736657 + MER31B LTR ERV1 1 151 -315 1324 199 88 26 chr4 121552005 121552357 -62736305 + MLT1A2 LTR MaLR 1 374 0 1830 164 84 53 chr4 121552357 121552651 -62736011 + MER31B LTR ERV1 151 465 -1 377 231 30 82 chr4 121554206 121554372 -62734290 - MIR SINE MIR -43 165 1 379 310 18 18 chr4 121554380 121554551 -62734111 - L2 LINE L2 -1258 2056 1886 216 333 39 13 chr4 121555479 121555557 -62733105 + L3b LINE CR1 1456 1535 -48 1785 88 15 11 chr4 121556648 121556910 -62731752 + AluSx SINE Alu 43 305 -7 257 211 11 42 chr4 121557993 121558088 -62730574 + (CCCGG)n Simple_repeat Simple_repeat 4 95 0 198 0 51 51 chr4 121558467 121558506 -62730156 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1425 221 55 43 chr4 121558745 121559183 -62729479 - LTR47B LTR ERVL 0 443 1 289 291 50 57 chr4 121559859 121560000 -62728662 - MIR3 SINE MIR -24 184 45 719 226 142 33 chr4 121560020 121560295 -62728367 - L2 LINE L2 -1 3312 3008 2495 127 29 38 chr4 121560851 121561126 -62727536 - MER65A LTR ERV1 0 445 169 315 0 0 0 chr4 121561126 121561161 -62727501 + (TC)n Simple_repeat Simple_repeat 2 36 0 * 342 0 0 0 chr4 121561160 121561198 -62727464 + (TG)n Simple_repeat Simple_repeat 1 38 0 2495 127 29 38 chr4 121561161 121561371 -62727291 - MER65A LTR ERV1 -276 169 1 184 375 0 0 chr4 121561782 121561846 -62726816 + MIR SINE MIR 76 139 -123 423 272 32 24 chr4 121562208 121562333 -62726329 + MIR SINE MIR 20 145 -117 1660 177 51 31 chr4 121562985 121563208 -62725454 - MLT1A1 LTR MaLR -2 363 129 1817 151 121 39 chr4 121563208 121563572 -62725090 - MSTD LTR MaLR -2 394 1 1660 177 51 31 chr4 121563572 121563704 -62724958 - MLT1A1 LTR MaLR -236 129 1 1873 142 0 16 chr4 121564012 121564323 -62724339 + AluJb SINE Alu 1 306 -6 4157 192 24 31 chr4 121614370 121615694 -62672968 + L1M2 LINE L1 4452 5765 -532 2747 16 0 0 chr4 121615882 121616186 -62672476 + AluYa5 SINE Alu 1 304 -7 2157 109 3 16 chr4 121616551 121616863 -62671799 - AluY SINE Alu -3 308 1 329 136 15 0 chr4 121617693 121617759 -62670903 + GA-rich Low_complexity Low_complexity 2 68 0 311 240 19 39 chr4 121617955 121618059 -62670603 + LTR67 LTR ERVL 410 511 -46 31 26 0 0 chr4 121618451 121618489 -62670173 + AT_rich Low_complexity Low_complexity 1 38 0 1947 147 0 23 chr4 121619236 121619536 -62669126 - AluSx SINE Alu -14 298 6 240 233 33 33 chr4 121619953 121620133 -62668529 + (TA)n Simple_repeat Simple_repeat 1 180 0 23 0 0 0 chr4 121620282 121620305 -62668357 + AT_rich Low_complexity Low_complexity 1 23 0 918 195 79 5 chr4 121620436 121620626 -62668036 + MER3 DNA MER1_type 6 209 0 317 98 20 20 chr4 121620586 121620637 -62668025 - MER3 DNA MER1_type -122 87 37 * 241 245 31 20 chr4 121621089 121621187 -62667475 - L1ME LINE L1 -306 5815 5717 1772 135 52 14 chr4 121621849 121622137 -62666525 - AluSx SINE Alu -13 299 1 30 0 0 0 chr4 121622211 121622241 -62666421 + AT_rich Low_complexity Low_complexity 1 30 0 974 195 148 19 chr4 121624341 121624551 -62664111 + MER8 DNA MER2_type 2 238 -1 2393 100 0 3 chr4 121625808 121626119 -62662543 - AluSx SINE Alu -2 310 1 22 56 0 0 chr4 121627477 121627513 -62661149 + AT_rich Low_complexity Low_complexity 1 36 0 323 255 124 41 chr4 121630156 121630301 -62658361 + MIR SINE MIR 88 244 -18 28 0 0 0 chr4 121630647 121630675 -62657987 + AT_rich Low_complexity Low_complexity 1 28 0 250 309 200 5 chr4 121631188 121631398 -62657264 + MIR SINE MIR 2 252 -10 216 200 180 0 chr4 121632320 121632370 -62656292 + MIR SINE MIR 92 150 -112 799 194 45 131 chr4 121632379 121632580 -62656082 - MER46C DNA MER2_type -8 330 167 2115 99 3 7 chr4 121632580 121632887 -62655775 + AluSg SINE Alu 1 306 0 799 194 45 131 chr4 121632887 121633019 -62655643 - MER46C DNA MER2_type -171 167 25 414 319 102 0 chr4 121633225 121633391 -62655271 + MIR SINE MIR 7 189 -73 25 0 0 0 chr4 121634608 121634633 -62654029 + AT_rich Low_complexity Low_complexity 1 25 0 2185 108 0 10 chr4 121635111 121635406 -62653256 - AluSc SINE Alu -8 301 10 505 233 147 36 chr4 121635544 121635869 -62652793 + MLT1K LTR MaLR 174 554 -34 2022 120 7 3 chr4 121636007 121636298 -62652364 + AluSx SINE Alu 9 300 -12 725 281 61 9 chr4 121636404 121636632 -62652030 - MIR SINE MIR -11 251 12 245 297 0 27 chr4 121636652 121636726 -62651936 - L2 LINE L2 0 3313 3242 2238 114 3 0 chr4 121636805 121637113 -62651549 + AluSc SINE Alu 1 309 0 764 160 32 0 chr4 121637230 121637355 -62651307 + FLAM_A SINE Alu 1 129 -4 387 0 0 0 chr4 121637890 121637933 -62650729 + (CA)n Simple_repeat Simple_repeat 2 44 0 226 129 0 0 chr4 121637949 121637980 -62650682 + Alu SINE Alu 1 31 -271 924 138 14 0 chr4 121638675 121638813 -62649849 - FLAM_C SINE Alu -3 140 1 241 304 109 11 chr4 121638896 121638988 -62649674 + MIR SINE MIR 2 102 -160 386 281 122 36 chr4 121639158 121639297 -62649365 - MIR3 SINE MIR -55 153 3 28 0 0 0 chr4 121639394 121639422 -62649240 + AT_rich Low_complexity Low_complexity 1 28 0 489 217 145 0 chr4 121639481 121639619 -62649043 + MIR SINE MIR 95 252 -10 25 65 0 0 chr4 121639969 121640015 -62648647 + AT_rich Low_complexity Low_complexity 1 46 0 507 301 99 16 chr4 121641467 121641922 -62646740 - L1MC4a LINE L1 -551 5570 5348 2069 129 0 23 chr4 121641930 121642233 -62646429 - AluSx SINE Alu -12 300 5 2213 117 3 0 chr4 121642476 121642775 -62645887 + AluSx SINE Alu 1 300 -12 275 188 0 0 chr4 121643235 121643283 -62645379 + L1MC5 LINE L1 7382 7429 -532 1430 111 0 68 chr4 121643338 121643573 -62645089 + AluSg/x SINE Alu 77 295 -15 611 190 145 45 chr4 121643612 121643854 -62644808 + L1MC5 LINE L1 7611 7876 -85 831 147 0 16 chr4 121643939 121644068 -62644594 + FLAM_C SINE Alu 1 127 -16 385 291 204 24 chr4 121644422 121644628 -62644034 - MIR SINE MIR 0 262 20 2047 137 60 23 chr4 121644705 121645056 -62643606 + THE1B LTR MaLR 1 364 0 364 219 0 0 chr4 121645153 121645217 -62643445 + L2 LINE L2 3200 3263 -9 1263 163 0 10 chr4 121645492 121645695 -62642967 - AluSg/x SINE Alu -12 300 100 1812 104 4 4 chr4 121645795 121646036 -62642626 - AluSx SINE Alu -71 241 1 327 67 0 0 chr4 121646036 121646081 -62642581 + MER65A LTR ERV1 401 445 0 999 169 21 21 chr4 121646127 121646316 -62642346 + MER5A DNA MER1_type 1 189 0 605 218 275 0 chr4 121648241 121648434 -62640228 + MIR SINE MIR 7 252 -10 22 0 0 0 chr4 121649191 121649213 -62639449 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr4 121650160 121650183 -62638479 + (A)n Simple_repeat Simple_repeat 1 23 0 1680 169 0 45 chr4 121650451 121650759 -62637903 + AluJo SINE Alu 1 294 -18 329 145 14 29 chr4 121650770 121650839 -62637823 + L1MC5 LINE L1 7840 7907 -54 21 0 0 0 chr4 121651104 121651125 -62637537 + AT_rich Low_complexity Low_complexity 1 21 0 2296 109 3 3 chr4 121651148 121651459 -62637203 + AluSx SINE Alu 1 311 -1 23 0 0 71 chr4 121651509 121651530 -62637132 + AT_rich Low_complexity Low_complexity 1 19 -20 2128 130 0 3 chr4 121651530 121651837 -62636825 + AluJo SINE Alu 1 306 -6 23 0 0 71 chr4 121651837 121651857 -62636805 + AT_rich Low_complexity Low_complexity 19 39 0 32 0 0 0 chr4 121651875 121651907 -62636755 + AT_rich Low_complexity Low_complexity 1 32 0 189 150 50 25 chr4 121652103 121652143 -62636519 + L2 LINE L2 3268 3308 -5 477 337 61 68 chr4 121652168 121652668 -62635994 - L2 LINE L2 -290 2982 2483 1171 179 35 9 chr4 121652668 121652897 -62635765 + MER46A DNA MER2_type 2 236 0 477 337 61 68 chr4 121652897 121653022 -62635640 - L2 LINE L2 -789 2483 2359 205 171 24 24 chr4 121653632 121653673 -62634989 - MER91 DNA MER1_type -76 64 24 2309 110 3 0 chr4 121654266 121654575 -62634087 + AluSx SINE Alu 3 312 0 298 168 128 112 chr4 121655594 121655719 -62632943 - L2 LINE L2 0 3313 3187 2952 175 16 24 chr4 121657369 121657922 -62630740 + MER44D DNA MER2_type 1 604 -1 22 0 0 0 chr4 121657956 121657978 -62630684 + AT_rich Low_complexity Low_complexity 1 22 0 194 175 100 0 chr4 121658199 121658239 -62630423 - L2 LINE L2 -7 3265 3222 467 167 0 0 chr4 121658381 121658459 -62630203 - AluJ/FRAM SINE Alu -14 298 221 22 35 0 0 chr4 121658559 121658588 -62630074 + AT_rich Low_complexity Low_complexity 1 29 0 1846 165 3 3 chr4 121658600 121658909 -62629753 - AluJo SINE Alu -3 309 1 333 206 268 48 chr4 121658941 121659150 -62629512 + MER112 DNA MER1_type 2 256 -4 204 259 19 19 chr4 121659379 121659433 -62629229 - MER5A DNA MER1_type -94 95 42 527 228 173 72 chr4 121659451 121659758 -62628904 - Charlie2a DNA MER1_type -870 1992 1655 353 62 42 0 chr4 121659774 121659822 -62628840 + MER66A LTR ERV1 287 336 -142 473 196 0 9 chr4 121659835 121659942 -62628720 + GA-rich Low_complexity Low_complexity 3 108 0 1389 299 96 43 chr4 121661663 121662658 -62626004 + L2 LINE L2 2149 3193 -120 23 54 0 0 chr4 121663058 121663095 -62625567 + AT_rich Low_complexity Low_complexity 1 37 0 182 355 136 18 chr4 121663398 121663474 -62625188 - MIR3 SINE MIR -3 205 139 1751 133 23 40 chr4 121663474 121663775 -62624887 + AluJb SINE Alu 1 296 -16 182 355 136 18 chr4 121663775 121663867 -62624795 - MIR3 SINE MIR -69 139 17 276 186 0 0 chr4 121664195 121664254 -62624408 + (TA)n Simple_repeat Simple_repeat 2 60 0 257 322 0 0 chr4 121664257 121664347 -62624315 - L1MC4 LINE L1 -1339 6703 6614 * 296 256 47 0 chr4 121664273 121664359 -62624303 + L1MC4 LINE L1 6614 6703 -1339 667 164 26 0 chr4 121664838 121664954 -62623708 + AluSg SINE Alu 5 123 -187 202 300 83 0 chr4 121665062 121665122 -62623540 - L2 LINE L2 0 3313 3249 21 57 0 0 chr4 121665363 121665398 -62623264 + AT_rich Low_complexity Low_complexity 1 35 0 183 241 69 17 chr4 121665999 121666057 -62622605 - L2 LINE L2 0 3313 3253 * 620 288 104 0 chr4 121666029 121666241 -62622421 - MIR SINE MIR -27 235 2 28 0 0 0 chr4 121666565 121666593 -62622069 + AT_rich Low_complexity Low_complexity 1 28 0 1665 128 4 0 chr4 121667047 121667281 -62621381 - AluSx SINE Alu -75 237 3 1772 148 23 23 chr4 121667330 121667635 -62621027 - AluJo SINE Alu -7 305 1 22 35 0 0 chr4 121667644 121667673 -62620989 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 121667838 121667859 -62620803 + AT_rich Low_complexity Low_complexity 1 21 0 2172 135 3 0 chr4 121668013 121668324 -62620338 - AluSx SINE Alu 0 312 1 195 273 109 36 chr4 121668799 121668854 -62619808 + L3 LINE CR1 1515 1573 -4 357 268 312 7 chr4 121669749 121669887 -62618775 + MER5A DNA MER1_type 10 189 0 1422 252 108 28 chr4 121670403 121670836 -62617826 + MLT1E LTR MaLR 122 589 -4 313 172 16 0 chr4 121671368 121671432 -62617230 - L1PA16 LINE L1 -5 6161 6097 349 208 52 10 chr4 121671571 121671667 -62616995 - L1MC5 LINE L1 -36 7925 7826 1723 139 56 23 chr4 121671747 121672050 -62616612 + MER1B DNA MER1_type 27 339 0 1631 342 61 11 chr4 121672051 121672527 -62616135 + Charlie1 DNA MER1_type 2261 2760 -1 6156 133 25 24 chr4 121672595 121673058 -62615604 - L1MA5A LINE L1 0 6297 5836 2145 129 0 0 chr4 121673058 121673367 -62615295 - AluSq SINE Alu -4 309 1 6156 133 25 24 chr4 121673367 121674143 -62614519 - L1MA5A LINE L1 -461 5836 5061 216 0 0 0 chr4 121674168 121674192 -62614470 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1270 126 0 11 chr4 121674211 121674393 -62614269 - AluSq SINE Alu -133 180 1 5321 125 17 6 chr4 121674393 121675284 -62613378 - L1MA5A LINE L1 -1131 5015 4115 1788 176 7 13 chr4 121676238 121676544 -62612118 + AluJo SINE Alu 9 312 0 355 321 146 28 chr4 121676883 121677095 -62611567 + MIR SINE MIR 2 238 -24 2039 108 7 0 chr4 121677107 121677403 -62611259 - AluSx SINE Alu -14 298 1 404 175 10 41 chr4 121678387 121678484 -62610178 - Charlie1a DNA MER1_type 0 1455 1362 5093 134 88 11 chr4 121678496 121679135 -62609527 - L1PB2 LINE L1 0 6151 5563 1950 82 0 11 chr4 121679135 121679404 -62609258 - AluSg SINE Alu 0 310 45 5093 134 88 11 chr4 121679404 121680023 -62608639 - L1PB2 LINE L1 -588 5563 4763 207 0 0 0 chr4 121680023 121680046 -62608616 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5093 134 88 11 chr4 121680046 121680278 -62608384 - L1PB2 LINE L1 -1388 4763 4550 632 178 80 8 chr4 121680361 121680587 -62608075 - Charlie1a DNA MER1_type -197 1258 931 * 2929 203 38 70 chr4 121680579 121681367 -62607295 - Charlie1a DNA MER1_type -676 779 17 854 157 0 0 chr4 121681517 121681651 -62607011 - FLAM_C SINE Alu -2 141 8 2076 124 76 24 chr4 121681998 121682368 -62606294 - MLT1B LTR MaLR -1 389 1 560 190 69 0 chr4 121682424 121682540 -62606122 + FLAM_A SINE Alu 10 133 -9 1690 177 13 10 chr4 121683453 121683763 -62604899 - AluJb SINE Alu -1 311 1 554 139 12 0 chr4 121683765 121683851 -62604811 + FLAM_C SINE Alu 36 122 -21 26 30 0 0 chr4 121683853 121683886 -62604776 + AT_rich Low_complexity Low_complexity 1 33 0 1174 244 92 19 chr4 121684764 121685190 -62603472 - LTR16A1 LTR ERVL 0 457 1 22 0 0 0 chr4 121685806 121685828 -62602834 + AT_rich Low_complexity Low_complexity 1 22 0 571 241 35 9 chr4 121685911 121686027 -62602635 - L2 LINE L2 -16 3256 3138 239 309 0 0 chr4 121687775 121687830 -62600832 + MIR SINE MIR 97 151 -57 485 240 40 13 chr4 121689379 121689529 -62599133 - L1ME4a LINE L1 -22 6099 5946 1361 279 37 41 chr4 121689633 121690329 -62598333 + L1ME3A LINE L1 4906 5590 -580 577 223 0 16 chr4 121690329 121690450 -62598212 - FLAM_A SINE Alu -13 120 2 1361 279 37 41 chr4 121690450 121690809 -62597853 + L1ME3A LINE L1 5590 5949 -221 520 158 0 0 chr4 121691376 121691458 -62597204 - L2 LINE L2 0 3313 3232 377 193 12 12 chr4 121691914 121691997 -62596665 + MER67B LTR ERV1 579 661 0 460 362 110 25 chr4 121692980 121693262 -62595400 - L3 LINE CR1 -11 1566 1261 2452 109 47 14 chr4 121693368 121693790 -62594872 - LTR23 LTR ERV1 0 437 2 29 28 0 0 chr4 121694387 121694423 -62594239 + AT_rich Low_complexity Low_complexity 1 36 0 27 0 0 0 chr4 121694527 121694554 -62594108 + AT_rich Low_complexity Low_complexity 1 27 0 764 245 0 0 chr4 121694581 121694740 -62593922 - FRAM SINE Alu -17 159 1 330 331 59 6 chr4 121694975 121695144 -62593518 - MARNA DNA Mariner -349 237 60 1043 85 0 0 chr4 121695145 121695274 -62593388 - AluSq/x SINE Alu -179 133 5 908 135 145 35 chr4 121695377 121695577 -62593085 + MLT1A1 LTR MaLR 1 222 -143 1741 166 23 0 chr4 121695578 121695886 -62592776 + L1M2 LINE L1 4839 5153 -993 2820 101 9 2 chr4 121695888 121696345 -62592317 + L1M2 LINE L1 5224 5683 -617 4351 133 13 7 chr4 121696345 121697052 -62591610 + L1MA6 LINE L1 5590 6300 0 1054 280 84 47 chr4 121697071 121697291 -62591371 + HAL1b LINE L1 54 264 -1084 2086 123 3 3 chr4 121697291 121697592 -62591070 + AluY SINE Alu 1 301 -10 1054 280 84 47 chr4 121697592 121698038 -62590624 + HAL1b LINE L1 264 745 -603 1026 231 76 94 chr4 121698065 121698631 -62590031 + MER34B LTR ERV1 8 563 -2 542 243 117 59 chr4 121698868 121699240 -62589422 + MLT1J LTR MaLR 70 511 0 2137 127 0 9 chr4 121699419 121699734 -62588928 + AluSx SINE Alu 1 312 0 231 114 0 0 chr4 121699774 121699809 -62588853 + (TG)n Simple_repeat Simple_repeat 2 36 0 249 275 117 17 chr4 121699864 121700010 -62588652 + L1MC/D LINE L1 4748 4909 -1237 723 299 164 0 chr4 121700408 121700810 -62587852 + L1MC/D LINE L1 5349 5816 -1992 8320 185 29 33 chr4 121700820 121701137 -62587525 + L1 LINE L1 2370 2687 -3459 1652 199 37 0 chr4 121701137 121701434 -62587228 - AluJb SINE Alu -4 308 1 8320 185 29 33 chr4 121701434 121703023 -62585639 + L1 LINE L1 2687 4269 -1877 5741 102 38 27 chr4 121703123 121703841 -62584821 + L1MA5A LINE L1 5347 6080 -217 2080 130 9 32 chr4 121703841 121704186 -62584476 + MER1B DNA MER1_type 1 337 0 5741 102 38 27 chr4 121704186 121704406 -62584256 + L1MA5A LINE L1 6080 6296 -1 247 204 74 0 chr4 121704960 121705014 -62583648 + MIR3 SINE MIR 138 195 -13 30 0 0 0 chr4 121705018 121705048 -62583614 + AT_rich Low_complexity Low_complexity 1 30 0 25 51 0 0 chr4 121706358 121706397 -62582265 + AT_rich Low_complexity Low_complexity 1 39 0 499 276 73 26 chr4 121707008 121707200 -62581462 + MIR SINE MIR 21 221 -41 334 309 88 15 chr4 121707246 121707382 -62581280 - MIR SINE MIR -70 192 47 573 272 66 24 chr4 121710521 121710808 -62577854 + L1MC4a LINE L1 5682 5980 -1828 341 291 0 0 chr4 121711333 121711419 -62577243 - L2 LINE L2 0 3272 3187 359 278 126 0 chr4 121711672 121711823 -62576839 - MIR SINE MIR -19 243 74 3803 111 29 5 chr4 121713899 121714493 -62574169 + L1PA16 LINE L1 5553 6160 -6 296 308 263 0 chr4 121714495 121714651 -62574011 - MIR SINE MIR -10 252 56 294 307 45 0 chr4 121714966 121715054 -62573608 + MIR3 SINE MIR 112 203 -5 392 271 39 39 chr4 121715518 121715647 -62573015 - MIR SINE MIR -64 144 16 460 127 13 13 chr4 121716990 121717069 -62571593 - MADE1 DNA Mariner -1 79 1 1406 183 25 43 chr4 121722073 121722330 -62566332 + MLT1A1 LTR MaLR 38 289 -76 2328 98 0 3 chr4 121722330 121722626 -62566036 - AluSp SINE Alu -18 295 1 1406 183 25 43 chr4 121722626 121722691 -62565971 + MLT1A1 LTR MaLR 289 354 -11 188 326 0 0 chr4 121723742 121723791 -62564871 - MIR SINE MIR -119 89 41 2267 106 0 7 chr4 121724009 121724311 -62564351 + AluSx SINE Alu 1 300 -12 297 179 0 0 chr4 121724492 121724559 -62564103 - L1M LINE L1 -918 5384 5318 432 347 7 0 chr4 121724670 121724814 -62563848 - MIR SINE MIR -116 146 2 226 310 37 70 chr4 121725072 121725187 -62563475 + MIR SINE MIR 37 146 -66 406 311 60 12 chr4 121725334 121725501 -62563161 - MIR SINE MIR -51 211 37 2005 109 3 18 chr4 121725546 121725831 -62562831 - AluJo SINE Alu -11 301 21 464 188 0 12 chr4 121725839 121725924 -62562738 - AluJo SINE Alu -142 170 87 576 223 61 40 chr4 121726278 121726426 -62562236 - MER91A DNA MER1_type -28 168 18 1776 107 51 92 chr4 121726457 121726849 -62561813 + L1MA7 LINE L1 5911 6286 -5 1770 123 138 0 chr4 121727084 121727409 -62561253 + MER65A LTR ERV1 40 409 -36 226 236 14 0 chr4 121727588 121727660 -62561002 + L1ME4a LINE L1 6046 6118 -3 26 30 0 0 chr4 121728136 121728169 -62560493 + AT_rich Low_complexity Low_complexity 1 33 0 397 162 14 0 chr4 121728443 121728517 -62560145 + U2 snRNA snRNA 112 186 -2 23 33 0 0 chr4 121730252 121730282 -62558380 + AT_rich Low_complexity Low_complexity 1 30 0 781 157 71 0 chr4 121730283 121730423 -62558239 - FRAM SINE Alu -23 153 4 191 250 148 83 chr4 121731493 121731601 -62557061 - MIR SINE MIR -62 146 32 21 57 0 0 chr4 121731615 121731650 -62557012 + AT_rich Low_complexity Low_complexity 1 35 0 43 20 0 0 chr4 121731824 121731874 -62556788 + AT_rich Low_complexity Low_complexity 1 50 0 270 0 0 0 chr4 121732072 121732102 -62556560 + (TG)n Simple_repeat Simple_repeat 2 31 0 1358 186 58 53 chr4 121733189 121733549 -62555113 + MLT1A2 LTR MaLR 1 362 -12 425 288 22 7 chr4 121733764 121733903 -62554759 + MER5A DNA MER1_type 1 141 -48 602 146 0 0 chr4 121734570 121734659 -62554003 - AluSg/x SINE Alu -27 285 197 22 0 0 0 chr4 121734663 121734685 -62553977 + AT_rich Low_complexity Low_complexity 1 22 0 201 403 81 11 chr4 121734982 121735168 -62553494 + L2 LINE L2 2434 2632 -682 420 284 124 25 chr4 121735189 121735390 -62553272 - MIR SINE MIR -6 256 36 1987 156 0 22 chr4 121737443 121737757 -62550905 + AluSx SINE Alu 1 307 -5 201 422 49 0 chr4 121738160 121738262 -62550400 + L2 LINE L2 3116 3222 -50 24 32 0 0 chr4 121738453 121738484 -62550178 + AT_rich Low_complexity Low_complexity 1 31 0 335 219 98 12 chr4 121740135 121740217 -62548445 + MIR3 SINE MIR 113 201 -7 545 335 102 41 chr4 121740609 121740973 -62547689 + HAL1 LINE L1 160 545 -1962 1020 253 114 20 chr4 121741056 121741494 -62547168 + HAL1 LINE L1 1002 1480 -1027 503 225 254 26 chr4 121741583 121741965 -62546697 + HAL1 LINE L1 2037 2505 -2 1894 175 0 10 chr4 121742069 121742378 -62546284 + AluJo SINE Alu 6 311 -1 209 330 0 0 chr4 121742730 121742821 -62545841 + MIR SINE MIR 64 153 -64 210 312 102 38 chr4 121743125 121743282 -62545380 + L2 LINE L2 2083 2249 -1065 189 139 0 0 chr4 121744003 121744046 -62544616 + (T)n Simple_repeat Simple_repeat 1 43 0 246 328 59 34 chr4 121744109 121744228 -62544434 + L2 LINE L2 3141 3262 -10 213 175 0 0 chr4 121745829 121745869 -62542793 + GA-rich Low_complexity Low_complexity 2 41 0 346 322 107 62 chr4 121746383 121746805 -62541857 + L1M2 LINE L1 822 1262 -5587 216 182 0 0 chr4 121747223 121747267 -62541395 + G-rich Low_complexity Low_complexity 1 44 0 193 353 90 8 chr4 121747769 121747891 -62540771 - MIR3 SINE MIR -28 180 49 350 352 72 64 chr4 121748279 121748988 -62539674 + L2 LINE L2 2503 3268 -4 2463 117 18 23 chr4 121749105 121749497 -62539165 - MLT1B LTR MaLR 0 390 1 22 0 0 0 chr4 121749589 121749611 -62539051 + AT_rich Low_complexity Low_complexity 1 22 0 2096 87 16 45 chr4 121749768 121750077 -62538585 + AluSq SINE Alu 1 300 -13 2265 120 25 35 chr4 121750381 121750749 -62537913 - THE1B LTR MaLR 0 364 1 864 245 78 8 chr4 121750833 121751078 -62537584 + MIR SINE MIR 1 262 0 294 262 68 29 chr4 121751194 121751297 -62537365 + L2 LINE L2 3148 3254 -18 2275 94 17 0 chr4 121751913 121752212 -62536450 - AluY SINE Alu -7 304 1 2004 220 90 13 chr4 121752419 121752897 -62535765 + LTR40a LTR ERVL 5 519 0 1642 158 0 89 chr4 121752913 121753249 -62535413 + AluJb SINE Alu 1 306 -6 258 86 0 0 chr4 121754471 121754506 -62534156 + tRNA-Gly-GGG tRNA tRNA 1 35 -39 218 279 87 19 chr4 121754757 121754861 -62533801 - L3 LINE CR1 -20 1557 1447 204 132 26 0 chr4 121754925 121754963 -62533699 + T-rich Low_complexity Low_complexity 5 43 0 2261 143 29 66 chr4 121755204 121755646 -62533016 - MSTB LTR MaLR 0 426 1 24 0 0 0 chr4 121756396 121756420 -62532242 + AT_rich Low_complexity Low_complexity 1 24 0 849 137 15 0 chr4 121756724 121756855 -62531807 + FLAM_C SINE Alu 1 133 0 1956 133 4 0 chr4 121757292 121757571 -62531091 + AluSx SINE Alu 1 280 -32 231 114 0 0 chr4 121757573 121757608 -62531054 + (TAA)n Simple_repeat Simple_repeat 2 36 0 684 279 114 5 chr4 121758013 121758232 -62530430 + MIR SINE MIR 15 257 -5 248 221 0 44 chr4 121758274 121758342 -62530320 - L1MC4a LINE L1 -1883 5925 5861 2060 119 3 10 chr4 121758639 121758933 -62529729 + AluSx SINE Alu 3 294 -18 3411 259 81 33 chr4 121759020 121759103 -62529559 + L2 LINE L2 38 116 -3198 2168 134 33 25 chr4 121759103 121759462 -62529200 - THE1B LTR MaLR 0 364 3 3411 259 81 33 chr4 121759462 121759576 -62529086 + L2 LINE L2 116 223 -3091 2264 116 0 0 chr4 121759576 121759878 -62528784 - AluSg SINE Alu -8 302 1 3411 259 81 33 chr4 121759878 121760860 -62527802 + L2 LINE L2 223 1275 -2039 2034 115 0 14 chr4 121761519 121761798 -62526864 + AluSq SINE Alu 21 295 -18 340 250 119 31 chr4 121762567 121762727 -62525935 + L1ME4a LINE L1 5694 5867 -254 190 303 172 20 chr4 121763014 121763113 -62525549 - L2 LINE L2 -10 3262 3149 203 143 0 24 chr4 121764279 121764321 -62524341 + (TTCC)n Simple_repeat Simple_repeat 3 43 0 387 105 0 0 chr4 121764366 121764423 -62524239 + (TCCC)n Simple_repeat Simple_repeat 4 60 0 31 26 0 0 chr4 121764613 121764651 -62524011 + AT_rich Low_complexity Low_complexity 1 38 0 2080 86 19 0 chr4 121764780 121765049 -62523613 + AluSg SINE Alu 1 274 -36 234 0 0 0 chr4 121765050 121765076 -62523586 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 389 273 39 23 chr4 121765631 121765759 -62522903 - MIR3 SINE MIR -6 202 73 258 114 91 0 chr4 121766456 121766500 -62522162 - MLT2B2 LTR ERVL 0 520 473 300 200 0 0 chr4 121766660 121766725 -62521937 + (CA)n Simple_repeat Simple_repeat 2 66 0 2080 136 0 7 chr4 121766757 121767058 -62521604 - AluSx SINE Alu -13 299 1 585 211 8 8 chr4 121767058 121767171 -62521491 - MLT2B2 LTR ERVL -53 462 347 667 249 138 0 chr4 121767175 121767400 -62521262 + Charlie2 DNA MER1_type 344 599 -2263 406 269 20 40 chr4 121767423 121767624 -62521038 - L1MEd LINE L1 -4902 1217 1021 499 271 21 85 chr4 121767624 121767860 -62520802 - L2 LINE L2 -5 3308 3088 325 268 93 0 chr4 121767860 121767957 -62520705 - L1MEd LINE L1 -5119 1000 895 7058 43 0 77 chr4 121769512 121771123 -62517539 + L1PA3 LINE L1 4619 6155 0 751 179 51 19 chr4 121771126 121771282 -62517380 + MLT2C1 LTR ERVL 189 349 -48 282 282 11 22 chr4 121771337 121771518 -62517144 + (TA)n Simple_repeat Simple_repeat 1 179 0 908 225 6 0 chr4 121771580 121771753 -62516909 - FRAM SINE Alu -3 173 1 242 200 0 0 chr4 121771822 121771867 -62516795 + MLT2C1 LTR ERVL 473 517 -3 281 207 7 157 chr4 121771868 121772008 -62516654 - L2 LINE L2 -400 2914 2796 225 97 32 108 chr4 121772419 121772512 -62516150 + A-rich Low_complexity Low_complexity 4 89 0 238 286 0 0 chr4 121773797 121773846 -62514816 - MER2 DNA MER2_type -1 344 296 331 130 19 0 chr4 121773950 121774004 -62514658 + MSTC LTR MaLR 372 426 -2 183 460 7 0 chr4 121774052 121774191 -62514471 - L2 LINE L2 -573 2741 2602 1116 284 43 76 chr4 121776178 121776334 -62512328 - MLT1K LTR MaLR 0 588 428 1206 128 0 6 chr4 121776334 121776514 -62512148 + L1PA16 LINE L1 5977 6155 -11 1116 284 43 76 chr4 121776514 121776842 -62511820 - MLT1K LTR MaLR -160 428 120 559 254 8 37 chr4 121777566 121777604 -62511058 - MER45A DNA AcHobo -1451 130 92 2154 132 0 3 chr4 121777604 121777914 -62510748 + AluSx SINE Alu 1 309 -3 559 254 8 37 chr4 121777914 121778009 -62510653 - MER45A DNA AcHobo -1489 92 1 289 269 26 13 chr4 121778104 121778182 -62510480 + MLT1L LTR MaLR 154 232 -383 246 121 0 0 chr4 121778495 121778528 -62510134 - Alu SINE Alu -270 33 1 195 42 0 0 chr4 121778948 121778972 -62509690 + (A)n Simple_repeat Simple_repeat 1 24 0 588 264 39 11 chr4 121779759 121779937 -62508725 - MIR SINE MIR -4 258 76 331 322 70 32 chr4 121780338 121780565 -62508097 + MIR SINE MIR 23 259 -3 431 279 136 60 chr4 121781594 121782232 -62506430 + L1M4 LINE L1 3362 4048 -2098 754 201 75 35 chr4 121782235 121782434 -62506228 - MER96B DNA MER1_type? -3 414 208 226 270 86 21 chr4 121782880 121783113 -62505549 + L1M4 LINE L1 2130 2377 -3769 396 296 162 41 chr4 121783167 121783586 -62505076 + L1M4 LINE L1 2460 2929 -3217 293 314 83 25 chr4 121783596 121783717 -62504945 - L2 LINE L2 -28 3285 3158 732 235 39 0 chr4 121783732 121783885 -62504777 - MIR SINE MIR -81 181 23 241 217 22 0 chr4 121784159 121784205 -62504457 + L1P LINE L1 3630 3676 -2470 351 44 0 0 chr4 121784208 121784253 -62504409 + (CA)n Simple_repeat Simple_repeat 2 46 0 437 190 211 7 chr4 121784328 121784470 -62504192 - MIR SINE MIR -25 237 67 326 312 0 0 chr4 121784499 121784624 -62504038 + L1M4 LINE L1 3811 3935 -2211 3071 117 100 0 chr4 121784685 121785164 -62503498 - MER1A DNA MER1_type 0 527 1 25 31 0 0 chr4 121785233 121785265 -62503397 + AT_rich Low_complexity Low_complexity 1 32 0 617 282 56 31 chr4 121785727 121785970 -62502692 - MIR SINE MIR -10 252 1 216 0 0 0 chr4 121786270 121786294 -62502368 + (T)n Simple_repeat Simple_repeat 1 24 0 544 108 0 48 chr4 121786439 121786522 -62502140 - AluSq SINE Alu -112 201 123 1404 186 25 0 chr4 121786531 121786810 -62501852 - L1MA9 LINE L1 -30 6282 5997 467 168 102 22 chr4 121786810 121786947 -62501715 + MER53 DNA DNA 42 189 0 915 286 120 48 chr4 121787592 121788834 -62499828 - L1MC4 LINE L1 0 8042 6548 198 0 0 0 chr4 121788834 121788856 -62499806 + (TC)n Simple_repeat Simple_repeat 1 22 0 915 286 120 48 chr4 121788856 121789188 -62499474 - L1MC4 LINE L1 -1494 6548 6241 23 33 0 0 chr4 121789407 121789437 -62499225 + AT_rich Low_complexity Low_complexity 1 30 0 267 252 27 118 chr4 121789643 121789882 -62498780 - L1ME LINE L1 -548 5601 5390 294 282 0 10 chr4 121789906 121790009 -62498653 - L1ME LINE L1 -2413 3716 3615 392 317 63 74 chr4 121790010 121790101 -62498561 - HAL1 LINE L1 -966 1541 1451 2572 65 0 0 chr4 121790101 121790409 -62498253 - AluY SINE Alu -3 308 1 392 317 63 74 chr4 121790409 121790601 -62498061 - HAL1 LINE L1 -1056 1451 1261 232 280 40 24 chr4 121790708 121790833 -62497829 - L1ME LINE L1 -5039 1080 954 21 0 0 0 chr4 121790884 121790905 -62497757 + AT_rich Low_complexity Low_complexity 1 21 0 36 23 0 0 chr4 121791995 121792038 -62496624 + AT_rich Low_complexity Low_complexity 1 43 0 26 30 0 0 chr4 121792710 121792743 -62495919 + AT_rich Low_complexity Low_complexity 1 33 0 354 229 59 0 chr4 121792897 121793015 -62495647 - L1MC4 LINE L1 -1799 6009 5885 665 314 42 51 chr4 121793077 121793666 -62494996 + L1M4 LINE L1 2324 2907 -3239 482 154 88 0 chr4 121793732 121793860 -62494802 + L1PA8 LINE L1 6050 6185 0 2026 114 30 91 chr4 121793891 121794118 -62494544 + Tigger2a DNA MER2_type 1 195 -2513 2197 71 7 4 chr4 121794118 121794398 -62494264 - AluY SINE Alu -30 281 1 2026 114 30 91 chr4 121794398 121794565 -62494097 + Tigger2a DNA MER2_type 195 371 -63 216 298 106 0 chr4 121795557 121795651 -62493011 + L2 LINE L2 3169 3272 0 718 243 16 48 chr4 121796288 121796477 -62492185 - MER63A DNA MER1_type -25 185 3 976 181 0 6 chr4 121797429 121797595 -62491067 + FAM SINE Alu 1 165 -10 23 0 0 0 chr4 121797595 121797618 -62491044 + AT_rich Low_complexity Low_complexity 1 23 0 2163 126 0 0 chr4 121797862 121798164 -62490498 + AluSx SINE Alu 1 302 -10 578 208 37 126 chr4 121798225 121798494 -62490168 - MIR SINE MIR -15 247 3 1012 303 161 37 chr4 121798545 121799271 -62489391 - L3 LINE CR1 -15 1562 747 347 274 12 0 chr4 121800364 121800448 -62488214 - MIR3 SINE MIR 0 208 124 1916 169 0 3 chr4 121800449 121800745 -62487917 + AluJo SINE Alu 1 295 -17 969 189 18 57 chr4 121800879 121801107 -62487555 - MER20 DNA MER1_type 0 219 1 2290 269 76 20 chr4 121802771 121803481 -62485181 + ERVL LTR ERVL 1803 2552 -2444 1973 316 51 10 chr4 121803507 121804354 -62484308 + ERVL LTR ERVL 2620 3535 -1905 518 245 80 20 chr4 121804562 121804762 -62483900 + ERVL LTR ERVL 3614 3825 -1171 2840 251 88 50 chr4 121804799 121805317 -62483345 + L1MC4 LINE L1 6701 7198 -844 2477 40 0 0 chr4 121805317 121805613 -62483049 + AluY SINE Alu 1 296 -15 2840 251 88 50 chr4 121805613 121806385 -62482277 + L1MC4 LINE L1 7198 8040 -2 537 110 0 24 chr4 121806442 121806524 -62482138 + MADE1 DNA Mariner 1 80 0 1570 191 7 3 chr4 121806732 121807047 -62481615 - AluJb SINE Alu 0 317 2 773 186 0 0 chr4 121807058 121807182 -62481480 - FLAM_C SINE Alu -17 126 3 333 155 0 0 chr4 121807459 121807517 -62481145 + T-rich Low_complexity Low_complexity 1 58 0 1526 138 101 52 chr4 121808311 121808658 -62480004 - L1MA4 LINE L1 0 6300 5937 229 352 23 11 chr4 121809203 121809291 -62479371 - L3 LINE CR1 -11 1566 1478 195 217 0 0 chr4 121809913 121809973 -62478689 + (TA)n Simple_repeat Simple_repeat 2 61 0 4770 39 0 7 chr4 121810428 121811012 -62477650 - L1PA6 LINE L1 -2 6152 5573 317 227 6 0 chr4 121812258 121812348 -62476314 - FRAM/FAM SINE Alu -102 64 1 907 199 20 4 chr4 121812352 121812603 -62476059 - L1MEc LINE L1 -2870 4087 3833 1950 214 34 2 chr4 121812677 121813177 -62475485 - L1MEc LINE L1 -3136 3821 3306 549 138 0 0 chr4 121813180 121813267 -62475395 - AluJ/FRAM SINE Alu -12 300 214 509 248 0 0 chr4 121813332 121813461 -62475201 - L1MEc LINE L1 -3923 3215 3087 520 245 0 0 chr4 121813461 121813555 -62475107 + FRAM SINE Alu 1 93 -83 909 263 49 11 chr4 121813707 121813992 -62474670 - L1MEc LINE L1 -6553 306 11 867 221 12 0 chr4 121814059 121814231 -62474431 - Tigger7 DNA MER2_type -2313 174 1 662 200 60 125 chr4 121814236 121814294 -62474368 - L1MCa LINE L1 -4155 2271 2211 7348 125 45 26 chr4 121814294 121815568 -62473094 + HSMAR2 DNA Mariner 3 1301 -1 662 200 60 125 chr4 121815568 121815740 -62472922 - L1MCa LINE L1 -4215 2211 2029 2433 126 33 16 chr4 121815740 121816170 -62472492 - LTR23 LTR ERV1 0 437 1 662 200 60 125 chr4 121816170 121816459 -62472203 - L1MCa LINE L1 -4397 2029 1785 1590 247 11 30 chr4 121817083 121817524 -62471138 - L2 LINE L2 -523 2791 2359 255 300 55 45 chr4 121818175 121818285 -62470377 + L3b LINE CR1 1249 1359 -224 1098 147 0 0 chr4 121818498 121818675 -62469987 - MSTC LTR MaLR -251 177 1 243 79 0 0 chr4 121819581 121819619 -62469043 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 198 0 0 0 chr4 121823030 121823052 -62465610 + (A)n Simple_repeat Simple_repeat 1 22 0 449 144 11 56 chr4 121823954 121824044 -62464618 - AluS SINE Alu -227 86 1 180 0 0 0 chr4 121824136 121824156 -62464506 + (TGG)n Simple_repeat Simple_repeat 1 20 0 2223 127 85 18 chr4 121824410 121824811 -62463851 + MSTA LTR MaLR 1 428 0 1218 167 5 0 chr4 121826127 121826313 -62462349 + MER5A DNA MER1_type 3 189 0 2132 189 41 20 chr4 121827856 121828349 -62460313 + MLT1D LTR MaLR 1 503 -2 2062 211 122 83 chr4 121828656 121829419 -62459243 + MER21B LTR ERV1 2 794 -69 1607 174 34 58 chr4 121832076 121832403 -62456259 - 7SLRNA srpRNA srpRNA -1 319 1 262 95 24 0 chr4 121833266 121833308 -62455354 + LTR49 LTR ERV1 553 595 0 222 246 35 7 chr4 121833910 121834052 -62454610 + CT-rich Low_complexity Low_complexity 3 148 0 341 296 15 15 chr4 121834461 121834593 -62454069 - MER94 DNA DNA -2 132 1 333 184 66 0 chr4 121834811 121834887 -62453775 + L1ME2 LINE L1 5769 5849 -317 843 268 4 4 chr4 121834902 121835152 -62453510 + L1ME2 LINE L1 5913 6162 -2 2548 43 0 0 chr4 121835171 121835472 -62453190 - AluY SINE Alu -10 301 1 24 0 0 0 chr4 121835600 121835624 -62453038 + AT_rich Low_complexity Low_complexity 1 24 0 1601 97 4 4 chr4 121835627 121835854 -62452808 - L1PB1 LINE L1 -6 6145 5919 288 271 89 33 chr4 121837101 121837315 -62451347 + LTR16C LTR ERVL 263 488 -3 508 266 129 33 chr4 121838125 121838366 -62450296 + MLT1J1 LTR MaLR 52 315 -131 272 155 69 0 chr4 121838606 121838664 -62449998 + MLT1J2 LTR MaLR 375 436 -14 192 97 0 0 chr4 121839451 121839482 -62449180 + (TAA)n Simple_repeat Simple_repeat 3 33 0 232 311 27 0 chr4 121840855 121840929 -62447733 + LTR67 LTR ERVL 150 225 -332 431 289 15 24 chr4 121841821 121842005 -62446657 - MIR SINE MIR 0 262 13 245 175 35 0 chr4 121842653 121842710 -62445952 + MLT1K LTR MaLR 529 587 -1 357 335 193 0 chr4 121843400 121843561 -62445101 + MER91A DNA MER1_type 4 195 -1 275 277 176 8 chr4 121845081 121845200 -62443462 - MIR SINE MIR -78 184 46 209 221 221 0 chr4 121845334 121845416 -62443246 + MIR3 SINE MIR 99 206 -2 240 184 41 0 chr4 121845499 121845548 -62443114 + CT-rich Low_complexity Low_complexity 2 52 0 203 235 0 37 chr4 121845744 121845825 -62442837 + T-rich Low_complexity Low_complexity 5 82 0 22 0 0 0 chr4 121845843 121845865 -62442797 + AT_rich Low_complexity Low_complexity 1 22 0 776 266 0 0 chr4 121845982 121846170 -62442492 + MER5A DNA MER1_type 1 188 -1 2013 136 10 17 chr4 121846496 121846798 -62441864 - AluSx SINE Alu -12 300 1 412 241 0 0 chr4 121847207 121847290 -62441372 + MIR SINE MIR 63 145 -117 502 292 97 7 chr4 121847472 121847626 -62441036 + MIR SINE MIR 47 214 -48 523 271 22 11 chr4 121848439 121848620 -62440042 - LTR33 LTR ERVL -38 483 301 1920 188 53 22 chr4 121848736 121849189 -62439473 - MLT1C LTR MaLR 0 467 1 1602 236 59 13 chr4 121849340 121849815 -62438847 - L1ME3A LINE L1 -2 6168 5672 298 318 74 66 chr4 121849838 121850080 -62438582 + L2 LINE L2 3029 3272 0 185 376 32 11 chr4 121850663 121850756 -62437906 + L2 LINE L2 2554 2648 -666 319 317 45 60 chr4 121852101 121852300 -62436362 - L1MEd LINE L1 -5363 756 561 310 287 56 21 chr4 121852493 121852636 -62436026 - L1MEd LINE L1 -5969 150 3 23 92 0 0 chr4 121853494 121853559 -62435103 + AT_rich Low_complexity Low_complexity 1 65 0 23 0 0 0 chr4 121854165 121854188 -62434474 + AT_rich Low_complexity Low_complexity 1 23 0 209 286 54 0 chr4 121854385 121854441 -62434221 + MIR SINE MIR 17 75 -133 255 305 211 5 chr4 121854803 121854993 -62433669 + L2 LINE L2 2715 2943 -371 507 225 71 12 chr4 121855264 121855433 -62433229 - L1ME3A LINE L1 0 6170 5992 488 133 0 22 chr4 121855454 121855544 -62433118 - L1ME3A LINE L1 -230 5940 5853 290 265 119 49 chr4 121855997 121856182 -62432480 + MLT1K LTR MaLR 375 572 -16 483 73 0 0 chr4 121856787 121856855 -62431807 + (TC)n Simple_repeat Simple_repeat 1 68 0 195 333 61 9 chr4 121857089 121857203 -62431459 - L2 LINE L2 -234 3038 2919 1822 174 0 3 chr4 121858658 121858952 -62429710 - AluJb SINE Alu -8 304 12 1784 201 112 13 chr4 121859806 121860269 -62428393 - MLT1H LTR MaLR 0 549 41 765 172 16 0 chr4 121860385 121860513 -62428149 - FRAM SINE Alu -19 157 28 346 183 0 0 chr4 121860567 121860627 -62428035 + AluJ/FLAM SINE Alu 2 61 -241 625 102 11 0 chr4 121860734 121860822 -62427840 + MER30 DNA MER1_type 141 229 -1 323 294 62 67 chr4 121860842 121861379 -62427283 - L1MEd LINE L1 -5005 1114 581 307 284 126 81 chr4 121861455 121861765 -62426897 - L1MEd LINE L1 -5738 381 58 639 264 165 2 chr4 121861789 121861983 -62426679 + MIR SINE MIR 41 262 0 313 154 27 173 chr4 121862088 121862198 -62426464 + AluJb SINE Alu 205 298 -4 268 352 76 0 chr4 121862262 121862367 -62426295 + L2 LINE L2 3154 3266 -6 224 286 16 0 chr4 121862382 121862445 -62426217 - L3 LINE CR1 -366 1211 1148 305 387 41 10 chr4 121862616 121862810 -62425852 - L3 LINE CR1 -754 823 624 471 335 113 5 chr4 121862865 121863077 -62425585 + L2 LINE L2 2599 2833 -481 372 303 48 14 chr4 121863096 121863241 -62425421 - HAL1 LINE L1 -982 1525 1376 628 88 0 44 chr4 121863266 121863379 -62425283 - Tigger7 DNA MER2_type -61 2426 2319 3537 196 66 49 chr4 121863621 121864685 -62423977 - L1MC4 LINE L1 0 8042 6961 318 366 69 0 chr4 121864895 121865097 -62423565 - L2 LINE L2 -842 2472 2257 384 148 193 23 chr4 121865098 121865186 -62423476 - Tigger7 DNA MER2_type 0 2487 2385 * 1310 231 11 0 chr4 121865184 121865444 -62423218 - Tigger7 DNA MER2_type -469 264 2 2334 89 0 3 chr4 121865806 121866109 -62422553 - AluY SINE Alu -9 302 1 600 182 0 0 chr4 121866131 121866230 -62422432 + Tigger7 DNA MER2_type 1 99 -634 223 338 61 61 chr4 121866241 121866439 -62422223 - L2 LINE L2 -1385 1929 1732 1062 213 97 64 chr4 121866887 121866960 -62421702 - LTR16B LTR ERVL -21 443 374 2079 128 29 61 chr4 121866960 121867335 -62421327 - THE1B LTR MaLR -1 363 1 1062 213 97 64 chr4 121867335 121867683 -62420979 - LTR16B LTR ERVL -90 374 8 607 160 135 0 chr4 121868239 121868395 -62420267 + MER96B DNA MER1_type? 241 417 0 198 0 0 0 chr4 121868519 121868541 -62420121 + (TC)n Simple_repeat Simple_repeat 1 22 0 2204 94 16 0 chr4 121868541 121868850 -62419812 - L1MC1 LINE L1 -6 6327 6014 333 161 0 0 chr4 121869252 121869308 -62419354 + L2 LINE L2 3257 3312 -1 577 252 61 24 chr4 121870230 121870476 -62418186 - Charlie7 DNA MER1_type -630 1982 1728 1015 292 44 5 chr4 121870504 121870936 -62417726 - Charlie7 DNA MER1_type -2049 563 115 729 292 123 7 chr4 121872483 121872932 -62415730 - MLT1L LTR MaLR 0 615 115 234 243 14 0 chr4 121872947 121873017 -62415645 - MLT1J LTR MaLR -2 509 439 2148 116 48 0 chr4 121873045 121873338 -62415324 + AluSx SINE Alu 1 307 -5 467 308 44 60 chr4 121873407 121873657 -62415005 - MLT1H LTR MaLR -103 446 201 1270 251 147 4 chr4 121873663 121874125 -62414537 - MLT1H LTR MaLR -21 528 1 649 260 101 45 chr4 121874172 121874480 -62414182 - MLT1J LTR MaLR -186 325 1 1281 278 79 8 chr4 121875825 121876357 -62412305 + HAL1 LINE L1 1611 2180 -327 230 338 7 28 chr4 121876364 121876506 -62412156 + L1MC5 LINE L1 7753 7891 -70 592 251 74 74 chr4 121876626 121876965 -62411697 + HAL1 LINE L1 2169 2507 0 1772 184 3 13 chr4 121877026 121877341 -62411321 + AluJb SINE Alu 1 312 0 404 145 14 14 chr4 121878346 121878415 -62410247 + L2 LINE L2 3223 3291 -22 6631 151 177 11 chr4 121879020 121880546 -62408116 + L1PBa LINE L1 739 2518 -4345 853 159 6 103 chr4 121880747 121880988 -62407674 + MLT2C1 LTR ERVL 1 218 -197 31750 39 32 2 chr4 121880988 121885127 -62403535 + L1P LINE L1 15 4279 -1867 2000 171 0 0 chr4 121885481 121885780 -62402882 - AluJb SINE Alu -13 299 1 245 259 0 35 chr4 121888857 121888915 -62399747 + L2 LINE L2 3214 3269 -3 459 169 285 23 chr4 121890867 121890997 -62397665 + MER63 DNA MER1_type 1 790 -272 233 313 43 52 chr4 121891139 121891254 -62397408 + L2 LINE L2 3148 3261 -11 6024 178 13 16 chr4 121891255 121892979 -62395683 + L1PB4 LINE L1 3964 5684 -472 2331 60 0 13 chr4 121892979 121893299 -62395363 + AluY SINE Alu 1 311 0 6024 178 13 16 chr4 121893299 121893761 -62394901 + L1PB4 LINE L1 5684 6146 -10 793 189 0 65 chr4 121894037 121894238 -62394424 - L1 LINE L1 -2154 3992 3805 2293 81 3 3 chr4 121894249 121894557 -62394105 + AluY SINE Alu 1 308 -3 5945 187 11 24 chr4 121894559 121895954 -62392708 + L1 LINE L1 3986 5362 -784 1883 161 0 0 chr4 121895960 121896271 -62392391 + AluJb SINE Alu 1 311 0 381 54 14 81 chr4 121896283 121896357 -62392305 + L1PB3 LINE L1 5303 5371 -783 38 0 0 0 chr4 121896390 121896428 -62392234 + AT_rich Low_complexity Low_complexity 1 38 0 2653 152 58 1 chr4 121896538 121897270 -62391392 + L1PB3 LINE L1 5365 6153 -1 2069 142 0 19 chr4 121897380 121897698 -62390964 + AluSx SINE Alu 1 312 0 1741 155 50 32 chr4 121897721 121898062 -62390600 - MER7A DNA MER2_type -1 345 1 2491 54 0 3 chr4 121898333 121898629 -62390033 - AluY SINE Alu -16 295 1 181 277 21 0 chr4 121900226 121900273 -62388389 - L3 LINE CR1 -491 1086 1039 27995 101 10 11 chr4 121900552 121905779 -62382883 - L1PA7 LINE L1 -5 6149 931 990 307 72 27 chr4 121906449 121906870 -62381792 + L2 LINE L2 2185 2632 -682 500 212 18 9 chr4 121906870 121906983 -62381679 + MER81 DNA DNA 1 114 0 990 307 72 27 chr4 121906983 121907050 -62381612 + L2 LINE L2 2632 2695 -619 2029 207 84 44 chr4 121907057 121907757 -62380905 + L1ME2 LINE L1 5417 6144 -20 26 30 0 0 chr4 121907767 121907800 -62380862 + AT_rich Low_complexity Low_complexity 1 33 0 710 300 85 47 chr4 121907816 121908391 -62380271 + L2 LINE L2 2706 3310 -3 347 251 135 56 chr4 121911493 121911591 -62377071 - L1MC5 LINE L1 -26 7935 7846 1653 201 25 0 chr4 121911591 121911874 -62376788 + AluJb SINE Alu 1 290 -22 347 251 135 56 chr4 121911874 121912078 -62376584 - L1MC5 LINE L1 -115 7846 7609 2369 104 119 13 chr4 121912182 121912568 -62376094 - MSTA LTR MaLR 0 428 2 261 57 0 0 chr4 121913605 121913640 -62375022 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1809 146 19 0 chr4 121913646 121913913 -62374749 - AluSx SINE Alu -40 272 1 23 0 0 0 chr4 121913925 121913948 -62374714 + AT_rich Low_complexity Low_complexity 1 23 0 500 215 148 38 chr4 121914121 121914309 -62374353 - MLT1G1 LTR MaLR 0 595 341 597 312 79 28 chr4 121914358 121914711 -62373951 + MLT1L LTR MaLR 187 557 -58 1227 237 64 25 chr4 121915002 121915308 -62373354 - MER113 DNA MER1_type? -112 409 83 1928 159 0 10 chr4 121915308 121915616 -62373046 + AluSq SINE Alu 1 305 -8 1227 237 64 25 chr4 121915616 121915702 -62372960 - MER113 DNA MER1_type? -438 83 2 196 423 0 18 chr4 121916081 121916192 -62372470 + L2 LINE L2 2949 3057 -215 442 326 69 23 chr4 121916549 121916767 -62371895 - L3b LINE CR1 -79 1504 1277 261 200 15 15 chr4 121917918 121917983 -62370679 + MIR SINE MIR 183 247 -15 324 0 0 0 chr4 121918306 121918342 -62370320 + (CA)n Simple_repeat Simple_repeat 2 37 0 415 243 99 0 chr4 121918980 121919091 -62369571 - LTR16C LTR ERVL -9 482 361 4193 237 43 87 chr4 122019143 122021342 -62267320 + L1P3 LINE L1 83 2197 -4264 * 10522 127 23 5 chr4 122021339 122023030 -62265632 + L1P LINE L1 3552 5273 -873 42824 47 3 15 chr4 122023136 122028636 -62260026 - L1P2 LINE L1 -719 5436 1 26 0 0 0 chr4 122029440 122029466 -62259196 + AT_rich Low_complexity Low_complexity 1 26 0 473 226 8 8 chr4 122029468 122029592 -62259070 - L1ME4a LINE L1 -4 6117 5994 483 255 28 35 chr4 122030424 122030569 -62258093 + MLT1J LTR MaLR 1 144 -367 * 560 270 102 9 chr4 122030567 122030793 -62257869 + MLT1J LTR MaLR 263 610 -5 4849 157 38 43 chr4 122031012 122031205 -62257457 + L1MB7 LINE L1 4836 5028 -1156 309 36 455 0 chr4 122031205 122031260 -62257402 + MADE1 DNA Mariner 1 80 0 4849 157 38 43 chr4 122031260 122032366 -62256296 + L1MB7 LINE L1 5028 6175 -9 291 272 48 88 chr4 122033048 122033302 -62255360 + MER102a DNA MER1_type 46 288 -1129 2584 107 3 6 chr4 122033302 122033667 -62254995 + THE1B LTR MaLR 1 364 0 291 272 48 88 chr4 122033667 122033706 -62254956 + MER102a DNA MER1_type 288 327 -3 195 333 14 71 chr4 122033730 122033871 -62254791 + MIR SINE MIR 80 212 -50 517 128 34 51 chr4 122033950 122034067 -62254595 - L1MA9 LINE L1 0 6312 6198 10506 129 25 30 chr4 122034067 122035808 -62252854 + Tigger1 DNA MER2_type 1 1731 -687 1027 110 0 0 chr4 122035814 122035983 -62252679 + AluSg/x SINE Alu 147 315 0 1905 128 110 6 chr4 122035983 122036319 -62252343 + Tigger1 DNA MER2_type 1738 2108 -310 634 154 32 16 chr4 122036327 122036450 -62252212 + Tigger1 DNA MER2_type 2293 2417 -1 9851 169 44 29 chr4 122036456 122037734 -62250928 - L1MA9 LINE L1 -118 6194 4937 204 40 0 0 chr4 122037734 122037759 -62250903 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 2290 127 23 3 chr4 122037759 122038113 -62250549 - L1PA15 LINE L1 -14 6151 5791 9851 169 44 29 chr4 122038113 122039949 -62248713 - L1MA9 LINE L1 -1374 4938 3029 5513 89 24 6 chr4 122040331 122041113 -62247549 + L1PA11 LINE L1 5379 6174 0 253 218 55 0 chr4 122042260 122042315 -62246347 + MIR SINE MIR 203 260 -2 221 224 20 0 chr4 122042755 122042804 -62245858 + (TA)n Simple_repeat Simple_repeat 2 51 0 1928 118 24 14 chr4 122043050 122043347 -62245315 - AluSx SINE Alu -12 300 1 21 36 0 0 chr4 122044286 122044314 -62244348 + AT_rich Low_complexity Low_complexity 1 28 0 251 220 43 102 chr4 122044468 122044654 -62244008 - L1ME4a LINE L1 -3 6118 5944 1499 172 8 38 chr4 122044855 122045122 -62243540 + AluJo SINE Alu 38 296 -16 21 0 0 0 chr4 122045225 122045246 -62243416 + AT_rich Low_complexity Low_complexity 1 21 0 1350 156 138 14 chr4 122045332 122045607 -62243055 + Tigger1 DNA MER2_type 1 309 -2109 * 11429 113 82 6 chr4 122045605 122047255 -62241407 + Tigger1 DNA MER2_type 456 2261 -157 2098 112 10 0 chr4 122047255 122047549 -62241113 - AluSx SINE Alu -15 297 1 11429 113 82 6 chr4 122047549 122047721 -62240941 + Tigger1 DNA MER2_type 2261 2418 0 21 57 0 0 chr4 122048098 122048133 -62240529 + AT_rich Low_complexity Low_complexity 1 35 0 274 280 97 0 chr4 122049409 122049502 -62239160 - L2 LINE L2 -37 3276 3175 276 254 16 0 chr4 122049639 122049702 -62238960 + L2 LINE L2 3234 3297 -16 397 266 98 37 chr4 122049938 122050084 -62238578 + L2 LINE L2 1876 2041 -1273 2128 126 56 0 chr4 122050084 122050426 -62238236 - MER46B DNA MER2_type 0 236 1 397 266 98 37 chr4 122050426 122050493 -62238169 + L2 LINE L2 2041 2102 -1212 203 312 161 21 chr4 122050648 122050741 -62237921 + L2 LINE L2 3207 3312 -1 31 26 0 0 chr4 122053031 122053069 -62235593 + AT_rich Low_complexity Low_complexity 1 38 0 1380 245 109 38 chr4 122053338 122053844 -62234818 - MER34 LTR ERV1 0 542 1 1850 185 0 0 chr4 122055076 122055374 -62233288 - AluJo SINE Alu -14 298 1 270 56 0 0 chr4 122056900 122056936 -62231726 + (TA)n Simple_repeat Simple_repeat 1 36 0 678 181 175 6 chr4 122058971 122059137 -62229525 + L1MB7 LINE L1 5981 6174 -10 23 0 0 0 chr4 122059348 122059371 -62229291 + AT_rich Low_complexity Low_complexity 1 23 0 338 382 21 0 chr4 122059939 122060083 -62228579 - MIR3 SINE MIR -1 207 61 2291 98 0 0 chr4 122060088 122060383 -62228279 + AluSx SINE Alu 1 295 -17 893 267 22 9 chr4 122061371 122061596 -62227066 - MIR SINE MIR -27 235 8 3420 213 68 46 chr4 122061882 122062578 -62226084 - L1MCa LINE L1 -2599 3827 3148 2166 120 0 0 chr4 122062578 122062877 -62225785 - AluSg1 SINE Alu -10 299 1 3420 213 68 46 chr4 122062877 122063193 -62225469 - L1MCa LINE L1 -3278 3148 2840 1722 176 3 17 chr4 122063193 122063489 -62225173 - AluJo SINE Alu -20 292 1 3420 213 68 46 chr4 122063489 122064071 -62224591 - L1MCa LINE L1 -3586 2840 2199 359 125 54 0 chr4 122064071 122064127 -62224535 - Tigger5 DNA MER2_type 0 2323 2265 357 206 0 0 chr4 122064135 122064198 -62224464 + Tigger5 DNA MER2_type 2254 2316 -7 467 192 13 0 chr4 122064201 122064279 -62224383 - Tigger5 DNA MER2_type -2244 79 1 1026 138 20 25 chr4 122064279 122064475 -62224187 - L1MCa LINE L1 -4226 2200 2006 214 281 0 16 chr4 122064475 122064539 -62224123 + (CATATA)n Simple_repeat Simple_repeat 1 63 0 894 178 139 8 chr4 122064554 122064813 -62223849 - L1MCa LINE L1 -4362 2064 1772 493 283 93 82 chr4 122064925 122065399 -62223263 + L1MEc LINE L1 1319 1797 -4599 690 228 67 61 chr4 122065425 122065625 -62223037 + L1MEc LINE L1 1884 2081 -4134 1283 129 38 54 chr4 122065625 122065865 -62222797 - MER46A DNA MER2_type 0 236 1 690 228 67 61 chr4 122065865 122066295 -62222367 + L1MEc LINE L1 2081 2471 -3744 24668 112 21 44 chr4 122066465 122070688 -62217974 + L1PA7 LINE L1 396 4523 -1623 1744 59 34 8 chr4 122070688 122070925 -62217737 + L1PA7 LINE L1 5912 6154 0 6893 51 4 27 chr4 122070934 122072582 -62216080 + L1PA7 LINE L1 4510 6147 -7 236 258 21 0 chr4 122072614 122072707 -62215955 + L1ME LINE L1 750 844 -5226 260 216 91 0 chr4 122072746 122072834 -62215828 + L1ME LINE L1 883 978 -5283 * 1777 238 134 67 chr4 122072831 122073207 -62215455 + L1MB4 LINE L1 3561 3910 -2236 1988 97 7 0 chr4 122073207 122073476 -62215186 + AluSg SINE Alu 40 310 0 1777 238 134 67 chr4 122073476 122074391 -62214271 + L1MB4 LINE L1 3910 4939 -1207 3231 166 33 29 chr4 122074417 122074694 -62213968 + L1MB4 LINE L1 5477 5751 -429 2520 47 0 3 chr4 122074694 122074991 -62213671 - AluY SINE Alu -15 296 1 3231 166 33 29 chr4 122074991 122075414 -62213248 + L1MB4 LINE L1 5751 6180 0 1714 202 143 43 chr4 122075414 122076022 -62212640 + L1MD2 LINE L1 5688 6356 -3 2101 111 20 3 chr4 122076128 122076434 -62212228 + AluSx SINE Alu 1 311 -1 1747 179 0 10 chr4 122076599 122076901 -62211761 - AluJo SINE Alu -13 299 1 911 216 35 65 chr4 122078424 122078656 -62210006 - MER8 DNA MER2_type -14 225 1 2117 100 3 7 chr4 122079370 122079660 -62209002 - AluSx SINE Alu -22 290 2 310 270 61 17 chr4 122079839 122079954 -62208708 + MER5A DNA MER1_type 3 122 -67 191 270 139 35 chr4 122081000 122081115 -62207547 - MIR3 SINE MIR -43 165 39 299 227 0 13 chr4 122081735 122081810 -62206852 + MER116 DNA Mariner 6 79 -1 291 293 94 9 chr4 122082389 122082495 -62206167 + L2 LINE L2 3158 3272 0 1400 174 71 14 chr4 122083219 122083501 -62205161 - AluJo SINE Alu -14 298 1 264 162 48 86 chr4 122083520 122083625 -62205037 - L1ME4a LINE L1 0 6121 6021 1627 225 145 49 chr4 122083735 122084286 -62204376 - L1ME1 LINE L1 -4 6231 5628 * 9451 237 63 36 chr4 122084270 122084832 -62203830 - L1ME1 LINE L1 -909 5306 4760 2127 110 33 3 chr4 122084832 122085133 -62203529 + AluSx SINE Alu 2 311 -1 9451 237 63 36 chr4 122085133 122086807 -62201855 - L1ME1 LINE L1 -1455 4760 2978 1409 219 49 6 chr4 122086807 122087136 -62201526 + MER2 DNA MER2_type 2 344 0 9451 237 63 36 chr4 122087136 122088628 -62200034 - L1ME1 LINE L1 -3237 2978 1527 1317 194 78 0 chr4 122088631 122088924 -62199738 - L1MB7 LINE L1 -8 6176 5861 639 163 113 0 chr4 122088930 122089071 -62199591 - L1MB7 LINE L1 -1320 4826 4670 1090 148 6 27 chr4 122089670 122089853 -62198809 - FRAM SINE Alu -1 175 1 343 279 57 118 chr4 122090285 122090404 -62198258 + L1ME4a LINE L1 5764 5889 -232 2238 116 0 0 chr4 122090404 122090707 -62197955 + AluSx SINE Alu 1 303 -9 343 279 57 118 chr4 122090707 122090953 -62197709 + L1ME4a LINE L1 5889 6107 -14 467 259 184 16 chr4 122091823 122092008 -62196654 + L1ME2 LINE L1 5940 6155 -9 901 251 105 17 chr4 122092179 122092628 -62196034 + MLT1H LTR MaLR 8 549 0 318 326 120 14 chr4 122092633 122093058 -62195604 - L1MB7 LINE L1 -1806 4340 3878 5280 87 6 1 chr4 122093298 122094025 -62194637 - L1PA13 LINE L1 -19 6144 5415 2401 52 0 42 chr4 122094217 122094527 -62194135 + AluY SINE Alu 11 307 -4 325 315 95 39 chr4 122094769 122095379 -62193283 - L1MB7 LINE L1 -3085 3061 2418 2069 125 3 7 chr4 122095472 122095776 -62192886 - AluSq SINE Alu -10 303 1 1675 174 3 20 chr4 122096070 122096369 -62192293 - AluJo SINE Alu -4 308 15 522 296 41 17 chr4 122096565 122096737 -62191925 + MIR SINE MIR 6 181 -81 301 313 135 12 chr4 122096756 122096919 -62191743 - MER5A DNA MER1_type -3 186 4 350 290 70 0 chr4 122096926 122097026 -62191636 + MIR SINE MIR 34 140 -122 30 0 0 0 chr4 122097026 122097056 -62191606 + AT_rich Low_complexity Low_complexity 1 30 0 31 44 0 0 chr4 122098670 122098715 -62189947 + AT_rich Low_complexity Low_complexity 1 45 0 234 0 0 0 chr4 122098950 122098976 -62189686 + (TA)n Simple_repeat Simple_repeat 2 27 0 288 289 102 47 chr4 122099002 122099130 -62189532 + MIR3 SINE MIR 38 172 -36 869 207 80 21 chr4 122099586 122099774 -62188888 + LTR48 LTR ERV1 1 199 -588 1333 161 26 0 chr4 122101016 122101246 -62187416 - MER46A DNA MER2_type 0 236 1 954 144 20 25 chr4 122102124 122102326 -62186336 + L1MA4 LINE L1 6096 6296 -4 1842 117 62 0 chr4 122102848 122103139 -62185523 + AluSg SINE Alu 1 309 -1 1384 119 51 0 chr4 122103200 122103436 -62185226 + L1MA3 LINE L1 6058 6305 0 1581 194 10 3 chr4 122103932 122104225 -62184437 - AluJo SINE Alu -17 295 1 1673 167 10 10 chr4 122104252 122104558 -62184104 + AluSq SINE Alu 1 306 -7 246 214 0 0 chr4 122105701 122105757 -62182905 + MADE1 DNA Mariner 1 56 -24 277 330 150 33 chr4 122105768 122106247 -62182415 - L2 LINE L2 -11 3302 2742 4502 172 34 6 chr4 122106274 122107211 -62181451 + L1MA9 LINE L1 5164 6124 -188 420 316 96 31 chr4 122107268 122107559 -62181103 - L2 LINE L2 -1317 1997 1688 303 340 83 6 chr4 122107912 122108068 -62180594 - L2 LINE L2 -1734 1580 1413 17666 159 34 8 chr4 122108109 122114476 -62174186 + L1MA5A LINE L1 1 6552 -476 270 0 0 0 chr4 122114476 122114506 -62174156 + (CA)n Simple_repeat Simple_repeat 2 31 0 17666 159 34 8 chr4 122114506 122114705 -62173957 + L1MA5A LINE L1 6552 6744 -284 1864 130 10 3 chr4 122114520 122114820 -62173842 + L1PB1 LINE L1 6559 6860 -7 * 432 234 109 84 chr4 122115302 122115523 -62173139 - MIR SINE MIR -17 245 20 487 238 205 0 chr4 122116832 122116954 -62171708 - MER20B DNA MER1_type -573 210 64 2158 87 58 0 chr4 122117146 122117423 -62171239 - AluSg SINE Alu -17 293 1 370 115 4 8 chr4 122117456 122117521 -62171141 + Alu SINE Alu 1 48 -251 3365 60 4 4 chr4 122117521 122117972 -62170690 - L1P LINE L1 -4871 1275 825 709 262 38 6 chr4 122118656 122118839 -62169823 - MIR SINE MIR 0 262 74 23 86 0 0 chr4 122119651 122119709 -62168953 + AT_rich Low_complexity Low_complexity 1 58 0 2841 152 20 24 chr4 122120192 122120731 -62167931 - L1PA16 LINE L1 -6 6160 5624 1913 177 7 0 chr4 122120902 122121212 -62167450 + AluSx SINE Alu 1 312 0 25316 144 13 23 chr4 122121236 122124849 -62163813 + L1PA8A LINE L1 714 4247 -2199 2489 84 0 0 chr4 122124849 122125160 -62163502 + AluY SINE Alu 1 311 0 25316 144 13 23 chr4 122125160 122127309 -62161353 + L1PA8A LINE L1 4247 6417 -29 2293 100 0 0 chr4 122127337 122127637 -62161025 + AluSx SINE Alu 3 302 -10 418 328 156 0 chr4 122128343 122128535 -62160127 - MIR SINE MIR -38 224 3 193 289 77 0 chr4 122129385 122129437 -62159225 + L2 LINE L2 3251 3306 -7 186 333 222 12 chr4 122130099 122130180 -62158482 + MER5A DNA MER1_type 74 171 -18 1091 209 163 16 chr4 122130189 122130447 -62158215 + AluJo SINE Alu 1 296 -6 251 333 0 11 chr4 122130526 122130616 -62158046 - MER5B DNA MER1_type -4 174 86 22 0 0 0 chr4 122131072 122131094 -62157568 + AT_rich Low_complexity Low_complexity 1 22 0 196 287 315 0 chr4 122132152 122132295 -62156367 - MIR3 SINE MIR -2 206 19 861 276 93 36 chr4 122133964 122134254 -62154408 + Charlie2 DNA MER1_type 1856 2185 -677 657 176 0 29 chr4 122134254 122134390 -62154272 + FLAM_A SINE Alu 1 132 -1 861 276 93 36 chr4 122134390 122134574 -62154088 + Charlie2 DNA MER1_type 2185 2357 -505 933 208 11 11 chr4 122134590 122134855 -62153807 - AluYa5 SINE Alu 0 311 47 2910 0 0 0 chr4 122135624 122135935 -62152727 - AluYa5 SINE Alu 0 311 1 303 171 304 13 chr4 122135947 122136105 -62152557 + Charlie2 DNA MER1_type 2378 2581 -281 419 165 73 28 chr4 122136125 122136234 -62152428 - L1MD3 LINE L1 -7 7988 7875 1828 149 171 46 chr4 122136234 122136709 -62151953 - LTR64 LTR ERVK 0 558 25 2507 185 176 74 chr4 122136761 122137240 -62151422 - L1MD3 LINE L1 -110 7885 7456 336 164 0 0 chr4 122137240 122137295 -62151367 - MLT1F1 LTR MaLR -508 59 5 2507 185 176 74 chr4 122137295 122137597 -62151065 - L1MD3 LINE L1 -539 7456 6965 1051 188 5 71 chr4 122137636 122137860 -62150802 - AluJb SINE Alu -102 210 2 1657 183 139 120 chr4 122137860 122138500 -62150162 - L1MD3 LINE L1 -877 6985 6280 2590 173 83 2 chr4 122138506 122139050 -62149612 - L1MC4 LINE L1 -1914 6128 5541 274 283 71 9 chr4 122139238 122139351 -62149311 - L1MCa LINE L1 -6238 188 69 762 188 66 24 chr4 122139387 122139600 -62149062 + Charlie2 DNA MER1_type 2600 2821 -41 678 168 65 7 chr4 122139754 122139909 -62148753 + MER96B DNA MER1_type? 11 174 -243 351 219 62 10 chr4 122139958 122140054 -62148608 + Charlie2 DNA MER1_type 2600 2700 -162 2075 139 0 3 chr4 122140492 122140786 -62147876 + AluSx SINE Alu 1 293 -19 335 295 86 7 chr4 122140921 122141060 -62147602 + L2 LINE L2 2526 2675 -639 1205 154 119 39 chr4 122141098 122141358 -62147304 - MSTA LTR MaLR -147 281 1 458 276 71 0 chr4 122142160 122142287 -62146375 + MER91A DNA MER1_type 25 160 -36 757 239 40 5 chr4 122142325 122142526 -62146136 + L2 LINE L2 2455 2662 -652 4156 103 21 101 chr4 122142565 122143294 -62145368 - L1PB4 LINE L1 -28 6128 5467 1585 127 62 4 chr4 122143294 122143538 -62145124 - AluSx SINE Alu -10 302 45 4156 103 21 101 chr4 122143538 122143611 -62145051 - L1PB4 LINE L1 -689 5467 5390 2315 41 27 0 chr4 122143609 122144066 -62144596 - L1P3 LINE L1 -602 5552 5086 * 6772 174 40 23 chr4 122144179 122145557 -62143105 - L1MCa LINE L1 -5007 1419 19 22 0 0 0 chr4 122145872 122145894 -62142768 + AT_rich Low_complexity Low_complexity 1 22 0 25 65 0 0 chr4 122146798 122146844 -62141818 + AT_rich Low_complexity Low_complexity 1 46 0 315 0 0 0 chr4 122149283 122149318 -62139344 + (TTTTG)n Simple_repeat Simple_repeat 3 37 0 1129 152 10 20 chr4 122149386 122149584 -62139078 + MER2 DNA MER2_type 2 197 -148 227 261 169 0 chr4 122149626 122149691 -62138971 + MER2 DNA MER2_type 270 345 0 32 43 0 0 chr4 122150200 122150246 -62138416 + AT_rich Low_complexity Low_complexity 1 46 0 32 0 0 0 chr4 122150672 122150704 -62137958 + AT_rich Low_complexity Low_complexity 1 32 0 28 0 0 0 chr4 122150737 122150765 -62137897 + AT_rich Low_complexity Low_complexity 1 28 0 301 311 107 38 chr4 122151220 122151802 -62136860 - HAL1 LINE L1 -704 1803 1182 4589 169 46 9 chr4 122151911 122153137 -62135525 - L1MB1 LINE L1 -1 6167 4901 288 294 0 0 chr4 122153294 122153362 -62135300 + L2 LINE L2 3200 3267 -5 292 203 114 49 chr4 122154303 122154426 -62134236 + L1MC5 LINE L1 7797 7927 -34 291 171 29 29 chr4 122154552 122154622 -62134040 + MER116 DNA Mariner 11 80 0 7933 8 1 0 chr4 122154814 122155748 -62132914 - L1HS LINE L1 0 6155 5221 378 315 185 0 chr4 122156291 122156453 -62132209 - MIR3 SINE MIR 0 208 17 23 33 0 0 chr4 122156489 122156519 -62132143 + AT_rich Low_complexity Low_complexity 1 30 0 1836 235 89 22 chr4 122157082 122157588 -62131074 - MLT1F LTR MaLR -2 540 1 400 267 150 0 chr4 122158653 122158773 -62129889 - MIR3 SINE MIR -7 201 64 1813 141 49 0 chr4 122159391 122159697 -62128965 - MER47A DNA MER2_type 0 366 46 206 180 40 40 chr4 122160002 122160102 -62128560 + (TA)n Simple_repeat Simple_repeat 1 100 0 1457 155 23 84 chr4 122160350 122160659 -62128003 + AluJb SINE Alu 1 290 -22 1097 193 16 57 chr4 122160765 122161009 -62127653 + MER8 DNA MER2_type 6 239 0 32 57 0 0 chr4 122161636 122161689 -62126973 + AT_rich Low_complexity Low_complexity 1 53 0 700 232 39 39 chr4 122162302 122162483 -62126179 + MER20 DNA MER1_type 33 213 -6 227 165 121 55 chr4 122162975 122163066 -62125596 - L1ME4a LINE L1 -4 6117 6021 283 184 105 26 chr4 122163181 122163257 -62125405 - L1ME4a LINE L1 -255 5866 5785 665 292 76 11 chr4 122163282 122163589 -62125073 - L1ME4a LINE L1 -394 5727 5401 941 294 120 29 chr4 122164225 122164515 -62124147 - L2 LINE L2 -558 2756 2494 2126 115 0 0 chr4 122164515 122164837 -62123825 - AluSg SINE Alu 0 310 1 941 294 120 29 chr4 122164837 122165036 -62123626 - L2 LINE L2 -820 2494 2222 230 337 0 71 chr4 122167466 122167564 -62121098 - L2 LINE L2 -189 3083 2993 290 351 125 36 chr4 122167711 122168158 -62120504 - L2 LINE L2 -433 2881 2395 410 266 14 58 chr4 122169046 122169185 -62119477 - L2 LINE L2 -1 3312 3180 25 0 0 0 chr4 122172313 122172338 -62116324 + AT_rich Low_complexity Low_complexity 1 25 0 1270 259 98 92 chr4 122172617 122173393 -62115269 - L2 LINE L2 -4 3309 2527 301 250 146 42 chr4 122173397 122173589 -62115073 - L1ME4a LINE L1 -5 6116 5905 293 272 82 40 chr4 122173646 122173911 -62114751 - L1MC4 LINE L1 -313 7729 7347 470 234 98 102 chr4 122173918 122174153 -62114509 + L1MC4 LINE L1 7503 7828 -167 511 221 207 0 chr4 122174155 122174300 -62114362 - MER5A DNA MER1_type -6 183 9 267 344 169 13 chr4 122174318 122174472 -62114190 + MIR SINE MIR 18 195 -67 2301 113 0 0 chr4 122174533 122174843 -62113819 - AluSx SINE Alu -2 310 1 201 74 0 0 chr4 122176841 122176868 -62111794 + (T)n Simple_repeat Simple_repeat 1 27 0 432 55 0 0 chr4 122177166 122177221 -62111441 + (GA)n Simple_repeat Simple_repeat 2 56 0 216 0 0 0 chr4 122177221 122177245 -62111417 + (TG)n Simple_repeat Simple_repeat 2 25 0 1691 80 8 25 chr4 122177257 122177494 -62111168 - AluY SINE Alu 0 311 79 240 35 0 0 chr4 122177706 122177735 -62110927 + (T)n Simple_repeat Simple_repeat 1 29 0 329 380 56 23 chr4 122177878 122178183 -62110479 - L1ME LINE L1 -5643 427 113 456 338 7 7 chr4 122178336 122178487 -62110175 - LTR33 LTR ERVL -361 160 10 867 294 54 72 chr4 122178786 122179340 -62109322 - ERVL LTR ERVL -430 5334 4791 752 234 81 20 chr4 122179740 122179937 -62108725 - LTR33 LTR ERVL -8 513 305 423 293 0 8 chr4 122180053 122180176 -62108486 - LTR33 LTR ERVL -364 157 36 33 0 0 0 chr4 122180674 122180707 -62107955 + AT_rich Low_complexity Low_complexity 1 33 0 248 209 30 30 chr4 122183240 122183307 -62105355 - MIR3 SINE MIR -7 201 135 821 276 58 8 chr4 122184485 122184728 -62103934 - MIR SINE MIR 0 262 8 520 211 7 78 chr4 122186722 122186864 -62101798 - MIR SINE MIR -118 144 13 21 0 0 0 chr4 122187315 122187336 -62101326 + AT_rich Low_complexity Low_complexity 1 21 0 405 306 0 27 chr4 122188455 122188566 -62100096 - MIR SINE MIR -65 143 36 2987 57 7 25 chr4 122188769 122189210 -62099452 - L1PA4 LINE L1 -3 6152 5720 2171 94 7 3 chr4 122189310 122189596 -62099066 - AluSg SINE Alu -23 287 1 306 283 0 22 chr4 122190196 122190288 -62098374 + L1MC4 LINE L1 6614 6703 -1339 398 293 26 9 chr4 122190754 122190870 -62097792 + MIR SINE MIR 73 190 -72 1032 150 140 5 chr4 122190878 122191085 -62097577 + MER46A DNA MER2_type 2 236 0 1892 128 13 33 chr4 122191912 122192217 -62096445 + AluJo SINE Alu 1 299 -13 297 51 0 0 chr4 122193458 122193497 -62095165 + MADE1 DNA Mariner 42 80 0 422 158 42 21 chr4 122193620 122193715 -62094947 + L1MB8 LINE L1 6082 6178 0 1259 33 0 7 chr4 122193727 122193880 -62094782 + L1PA3 LINE L1 6001 6152 -3 23 0 0 0 chr4 122194042 122194065 -62094597 + AT_rich Low_complexity Low_complexity 1 23 0 531 285 72 34 chr4 122195554 122195761 -62092901 + MIR SINE MIR 3 217 -45 22 80 0 0 chr4 122196937 122196987 -62091675 + AT_rich Low_complexity Low_complexity 1 50 0 846 239 105 36 chr4 122197503 122197809 -62090853 - MER2 DNA MER2_type -17 328 2 242 269 58 77 chr4 122198304 122198408 -62090254 - MIR3 SINE MIR -97 111 10 684 287 52 58 chr4 122198567 122198912 -62089750 + L1MC4a LINE L1 5493 5835 -1973 326 273 160 10 chr4 122199138 122199332 -62089330 - MER5C DNA MER1_type -2 322 100 32319 106 15 31 chr4 122199344 122204508 -62084154 + L1P LINE L1 12 5093 -1053 350 135 10 167 chr4 122204610 122204675 -62083987 - L1 LINE L1 -3053 4512 4465 2047 125 6 13 chr4 122204675 122204988 -62083674 - AluSx SINE Alu -1 311 1 350 135 10 167 chr4 122204988 122205018 -62083644 - L1 LINE L1 -3100 4465 4432 260 163 0 0 chr4 122205018 122205061 -62083601 - Alu SINE Alu -258 45 3 2653 232 45 69 chr4 122205064 122205766 -62082896 - L1 LINE L1 -3106 4459 3742 2213 122 0 0 chr4 122205766 122206060 -62082602 + AluSx SINE Alu 1 294 -18 2653 232 45 69 chr4 122206060 122206875 -62081787 - L1 LINE L1 -3823 3742 2964 3339 166 40 2 chr4 122207289 122207832 -62080830 - MER72 LTR ERV1 -158 564 1 24 53 0 0 chr4 122208615 122208653 -62080009 + AT_rich Low_complexity Low_complexity 1 38 0 1210 184 157 39 chr4 122209030 122209261 -62079401 + LTR49-int LTR ERV1 1026 1309 -5022 3306 110 20 10 chr4 122209261 122209763 -62078899 - MER84 LTR ERV1 0 507 1 1210 184 157 39 chr4 122209763 122209863 -62078799 + LTR49-int LTR ERV1 1309 1396 -4935 1476 185 67 27 chr4 122209977 122210231 -62078431 + LTR49-int LTR ERV1 1372 1647 -4684 189 0 0 0 chr4 122210231 122210252 -62078410 + (GA)n Simple_repeat Simple_repeat 1 21 0 1476 185 67 27 chr4 122210252 122210370 -62078292 + LTR49-int LTR ERV1 1647 1759 -4572 4439 113 6 46 chr4 122210389 122211109 -62077553 - LTR8 LTR ERV1 0 691 1 8027 151 52 39 chr4 122211110 122213797 -62074865 - HUERS-P1 LTR ERV1 -1 6262 2572 8323 145 16 8 chr4 122213798 122215611 -62073051 - L1P4 LINE L1 -519 5642 3820 1012 194 40 28 chr4 122215608 122215900 -62072762 - L1M1 LINE L1 -3928 3637 3353 * 1690 197 0 10 chr4 122215900 122216205 -62072457 + AluJo SINE Alu 1 302 -10 1012 194 40 28 chr4 122216205 122216267 -62072395 - L1M1 LINE L1 -4212 3353 3293 1478 101 5 0 chr4 122266485 122266704 -62021958 - L1P LINE L1 -5926 220 1 3468 98 24 69 chr4 122266704 122267066 -62021596 - L1M1 LINE L1 -3895 3670 3352 1754 198 0 0 chr4 122267066 122267359 -62021303 - AluJb SINE Alu -19 293 1 3468 98 24 69 chr4 122267359 122267692 -62020970 - L1M1 LINE L1 -4213 3352 3006 30 77 0 0 chr4 122269481 122269546 -62019116 + AT_rich Low_complexity Low_complexity 1 65 0 375 95 19 38 chr4 122271165 122271270 -62017392 + (TA)n Simple_repeat Simple_repeat 2 104 0 229 295 0 3 chr4 122271774 122271834 -62016828 - MIR SINE MIR -101 107 48 298 319 0 0 chr4 122271888 122271960 -62016702 - L2 LINE L2 -10 3303 3232 1495 154 70 11 chr4 122272087 122272360 -62016302 + AluJo SINE Alu 1 289 -23 258 32 0 0 chr4 122272483 122272514 -62016148 + (GGAA)n Simple_repeat Simple_repeat 1 31 0 535 258 132 19 chr4 122272590 122272900 -62015762 + L1ME LINE L1 5465 5809 -312 2545 54 0 0 chr4 122273125 122273422 -62015240 - AluY SINE Alu -14 297 1 245 337 36 0 chr4 122273823 122273906 -62014756 - MIR SINE MIR -157 105 20 229 172 17 35 chr4 122274083 122274141 -62014521 + (TCCA)n Simple_repeat Simple_repeat 2 58 0 971 249 52 9 chr4 122274164 122274393 -62014269 + MIR SINE MIR 2 240 -22 339 330 41 0 chr4 122274416 122274513 -62014149 - L2 LINE L2 -33 3280 3180 2284 92 20 0 chr4 122274776 122275070 -62013592 - AluSx SINE Alu -12 300 1 824 239 0 33 chr4 122276330 122276543 -62012119 + L1MC4 LINE L1 7406 7611 -431 543 251 147 6 chr4 122276543 122276706 -62011956 + MER5A DNA MER1_type 4 189 0 440 174 17 12 chr4 122276850 122276986 -62011676 - MER5A DNA MER1_type -2 187 4 409 269 26 62 chr4 122276993 122277161 -62011501 + L1MC4 LINE L1 7744 7916 -126 241 45 23 23 chr4 122277161 122277205 -62011457 + (TGGA)n Simple_repeat Simple_repeat 3 46 0 4515 127 74 22 chr4 122277205 122277990 -62010672 + LTR1B LTR ERV1 1 826 0 409 269 26 62 chr4 122277990 122278047 -62010615 + L1MC4 LINE L1 7914 7962 -80 777 260 48 95 chr4 122278113 122278682 -62009980 - MER34 LTR ERV1 0 542 1 211 211 0 0 chr4 122280033 122280071 -62008591 + (CA)n Simple_repeat Simple_repeat 1 38 0 232 304 141 22 chr4 122280377 122280469 -62008193 + MIR SINE MIR 49 151 -57 1106 152 26 11 chr4 122280551 122280742 -62007920 + MER20 DNA MER1_type 25 218 -1 2035 139 78 16 chr4 122280994 122281368 -62007294 - MSTB2 LTR MaLR 0 457 61 238 177 0 48 chr4 122281368 122281430 -62007232 - MSTB2-int LTR MaLR -126 1525 1467 2015 147 15 99 chr4 122281443 122281906 -62006756 + Tigger2a DNA MER2_type 11 434 0 5504 217 38 49 chr4 122281906 122283390 -62005272 - MSTB2-int LTR MaLR -183 1468 1 2312 133 126 2 chr4 122283390 122283796 -62004866 - MSTB2 LTR MaLR 0 457 2 1644 170 9 94 chr4 122283811 122283924 -62004738 - MLT1B LTR MaLR -2 388 267 2598 145 21 19 chr4 122283924 122284351 -62004311 + MSTC LTR MaLR 1 428 0 1644 170 9 94 chr4 122284351 122284661 -62004001 - MLT1B LTR MaLR -123 267 1 578 279 117 0 chr4 122284892 122285071 -62003591 + MIR SINE MIR 54 253 -9 277 325 82 10 chr4 122285698 122285892 -62002770 + L2 LINE L2 2856 3063 -209 1748 177 57 50 chr4 122285912 122286369 -62002293 - L1ME2 LINE L1 -9 6089 5630 4218 249 70 64 chr4 122286383 122287192 -62001470 - L1ME2 LINE L1 -2051 4029 3226 1957 145 7 3 chr4 122287192 122287488 -62001174 - AluSx SINE Alu -10 302 6 4218 249 70 64 chr4 122287488 122287719 -62000943 - L1ME2 LINE L1 -2854 3226 2998 2012 114 10 7 chr4 122287719 122288009 -62000653 + AluSg SINE Alu 1 291 -19 4218 249 70 64 chr4 122288009 122288377 -62000285 - L1ME2 LINE L1 -3082 2998 2634 2716 133 36 2 chr4 122288377 122288789 -61999873 - MSTB LTR MaLR 0 426 1 4218 249 70 64 chr4 122288789 122289435 -61999227 - L1ME2 LINE L1 -3446 2634 1993 2375 90 3 0 chr4 122289435 122289736 -61998926 - AluSx SINE Alu -10 302 1 4218 249 70 64 chr4 122289736 122290068 -61998594 - L1ME2 LINE L1 -4087 1993 1664 294 176 0 0 chr4 122290068 122290119 -61998543 - 5S rRNA rRNA -70 51 1 4218 249 70 64 chr4 122290119 122291218 -61997444 - L1ME2 LINE L1 -4416 1664 525 597 343 76 21 chr4 122291424 122291847 -61996815 - L1ME2 LINE L1 -5618 452 7 778 164 8 0 chr4 122291861 122291983 -61996679 - FLAM_A SINE Alu -9 124 2 269 227 15 0 chr4 122292639 122292705 -61995957 - MLT1K LTR MaLR -8 580 514 431 297 55 33 chr4 122292747 122293094 -61995568 - MLT1K LTR MaLR -151 437 13 207 295 16 66 chr4 122293588 122293710 -61994952 - MIR SINE MIR -31 231 116 2685 108 149 2 chr4 122294720 122295157 -61993505 + MER61D LTR ERV1 1 501 0 34 65 0 0 chr4 122295398 122295460 -61993202 + AT_rich Low_complexity Low_complexity 1 62 0 585 271 34 21 chr4 122295752 122295988 -61992674 + LTR16A1 LTR ERVL 187 425 -32 1488 151 0 0 chr4 122296024 122296242 -61992420 + AluSg/x SINE Alu 90 307 -5 198 143 0 0 chr4 122296258 122296293 -61992369 + (CA)n Simple_repeat Simple_repeat 2 36 0 365 243 186 21 chr4 122296568 122296708 -61991954 - L1ME3A LINE L1 0 6170 6008 1398 265 88 18 chr4 122297214 122297859 -61990803 - L2 LINE L2 -4 3309 2624 1071 157 95 38 chr4 122297860 122298219 -61990443 + MSTA LTR MaLR 1 428 0 410 299 91 7 chr4 122298219 122298373 -61990289 - L2 LINE L2 -687 2627 2461 3885 83 0 4 chr4 122298728 122299245 -61989417 - L1PA8A LINE L1 0 6131 5617 1238 334 95 35 chr4 122299276 122300421 -61988241 - L2 LINE L2 -337 2977 1764 284 363 140 25 chr4 122300951 122301386 -61987276 - L2 LINE L2 -2498 816 332 28 48 0 0 chr4 122301562 122301604 -61987058 + AT_rich Low_complexity Low_complexity 1 42 0 202 206 0 0 chr4 122301776 122301810 -61986852 + polypyrimidine Low_complexity Low_complexity 3 36 0 321 215 38 38 chr4 122301989 122302068 -61986594 - MIR3 SINE MIR -30 178 100 217 244 0 0 chr4 122303192 122303237 -61985425 + GA-rich Low_complexity Low_complexity 4 48 0 457 258 132 54 chr4 122304390 122304743 -61983919 - L1ME4a LINE L1 0 6121 5716 2321 102 7 0 chr4 122304743 122305047 -61983615 - AluSx SINE Alu -6 306 1 457 258 132 54 chr4 122305047 122305194 -61983468 - L1ME4a LINE L1 -405 5716 5582 280 188 43 14 chr4 122305267 122305336 -61983326 - L1ME4a LINE L1 -672 5449 5379 438 364 25 15 chr4 122305445 122305643 -61983019 + MIR3 SINE MIR 2 201 -7 2214 103 3 0 chr4 122305820 122306112 -61982550 + AluSx SINE Alu 1 293 -19 2308 79 0 23 chr4 122306635 122306939 -61981723 + AluY SINE Alu 1 297 -14 633 188 0 83 chr4 122309680 122309824 -61978838 - FLAM_C SINE Alu 0 133 2 2563 65 0 3 chr4 122309919 122310226 -61978436 + AluSc SINE Alu 1 306 -3 1170 161 28 23 chr4 122310263 122310481 -61978181 - MER20 DNA MER1_type 0 219 1 249 33 0 0 chr4 122313600 122313630 -61975032 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 273 319 214 11 chr4 122313975 122314157 -61974505 + MIR SINE MIR 10 228 -34 2152 189 61 69 chr4 122314562 122315071 -61973591 + MLT1D LTR MaLR 1 505 0 25 0 0 0 chr4 122315558 122315583 -61973079 + AT_rich Low_complexity Low_complexity 1 25 0 220 200 0 22 chr4 122316294 122316339 -61972323 + GA-rich Low_complexity Low_complexity 1 44 0 709 289 100 58 chr4 122318706 122319292 -61969370 - L1MC4a LINE L1 -353 5817 5258 243 259 121 35 chr4 122320105 122320221 -61968441 - MIR SINE MIR -37 225 100 222 308 30 30 chr4 122321294 122321427 -61967235 + CT-rich Low_complexity Low_complexity 5 137 0 2429 92 0 3 chr4 122322121 122322425 -61966237 + AluSp SINE Alu 1 303 -10 184 294 176 0 chr4 122323020 122323105 -61965557 - MIR3 SINE MIR -31 177 78 180 205 0 26 chr4 122323221 122323260 -61965402 - MIR SINE MIR -12 250 213 264 218 64 13 chr4 122323292 122323370 -61965292 + HsTC2 DNA Tc2 1 82 -1816 233 195 0 0 chr4 122323349 122323390 -61965272 + HsTC2 DNA Tc2 1858 1898 0 * 476 188 111 8 chr4 122323398 122323515 -61965147 - MIR SINE MIR -76 186 58 5936 66 1 4 chr4 122325254 122325970 -61962692 - L1PA7 LINE L1 -1 6153 5440 360 278 10 21 chr4 122326187 122326284 -61962378 + L2 LINE L2 3213 3308 -5 229 132 0 0 chr4 122327330 122327368 -61961294 - L2 LINE L2 0 3313 3276 426 355 7 0 chr4 122327539 122327677 -61960985 - MER91A DNA MER1_type -44 152 14 221 234 21 0 chr4 122327806 122327853 -61960809 + MIR3 SINE MIR 113 160 -48 802 231 91 37 chr4 122327894 122328137 -61960525 + MIR SINE MIR 6 261 -1 924 228 291 17 chr4 122328548 122328970 -61959692 - MLT1H LTR MaLR 0 549 12 1441 127 77 0 chr4 122329010 122329230 -61959432 - L1PA16 LINE L1 -9 6157 5921 2408 101 75 5 chr4 122329230 122329606 -61959056 + L1P4 LINE L1 5408 5809 -357 222 146 24 0 chr4 122331253 122331294 -61957368 + CT-rich Low_complexity Low_complexity 1 42 0 362 212 192 35 chr4 122331920 122332118 -61956544 - L2 LINE L2 0 3313 3085 * 5131 259 99 19 chr4 122332116 122333816 -61954846 - L2 LINE L2 -1008 2306 471 1994 151 3 0 chr4 122333928 122334227 -61954435 - AluSx SINE Alu -11 301 2 645 263 18 29 chr4 122334262 122334433 -61954229 + MER5B DNA MER1_type 7 175 -3 474 244 6 117 chr4 122336117 122336297 -61952365 + MER102b DNA MER1_type 171 330 -11 933 225 270 53 chr4 122337019 122337675 -61950987 + MLT2F LTR ERVL 6 628 0 662 113 9 38 chr4 122338695 122338801 -61949861 + LTR23 LTR ERV1 3 105 -332 616 216 10 67 chr4 122338805 122338999 -61949663 + L2 LINE L2 3113 3295 -18 380 307 109 10 chr4 122339419 122339629 -61949033 - MIR SINE MIR -19 243 12 32 0 0 0 chr4 122339801 122339833 -61948829 + AT_rich Low_complexity Low_complexity 1 32 0 2104 149 27 6 chr4 122339833 122340169 -61948493 + MER2 DNA MER2_type 1 343 -1 2534 64 0 3 chr4 122340430 122340742 -61947920 + AluY SINE Alu 1 311 0 374 172 0 58 chr4 122340935 122341022 -61947640 - MLT1F LTR MaLR -2 540 459 * 737 164 30 22 chr4 122341009 122341143 -61947519 - MLT1F LTR MaLR -266 276 142 489 284 27 27 chr4 122341349 122341532 -61947130 + MIR SINE MIR 1 183 -79 198 235 106 35 chr4 122341630 122341715 -61946947 + L2 LINE L2 3179 3269 -44 497 257 14 28 chr4 122341753 122341897 -61946765 + MIR SINE MIR 15 156 -106 305 314 88 0 chr4 122341962 122342064 -61946598 + MIR SINE MIR 150 260 -2 1982 147 3 0 chr4 122342099 122342398 -61946264 + AluSx SINE Alu 1 300 -12 968 183 42 0 chr4 122342496 122342687 -61945975 + MER3 DNA MER1_type 1 199 -10 466 290 27 27 chr4 122343139 122343322 -61945340 - MIR SINE MIR -79 183 1 231 36 0 0 chr4 122344020 122344048 -61944614 + (T)n Simple_repeat Simple_repeat 1 28 0 29487 22 0 0 chr4 122344053 122348245 -61940417 - L1HS LINE L1 0 6155 1964 399 229 199 8 chr4 122348344 122348475 -61940187 + MIR SINE MIR 34 189 -73 1052 258 72 18 chr4 122348504 122348838 -61939824 - MLT1J2 LTR MaLR -41 409 58 194 283 17 0 chr4 122348863 122348923 -61939739 + MIR SINE MIR 195 255 -7 297 228 66 0 chr4 122349086 122349163 -61939499 + MIR SINE MIR 68 150 -58 2276 107 0 19 chr4 122349440 122349758 -61938904 + AluSx SINE Alu 1 312 0 207 368 0 53 chr4 122350810 122350905 -61937757 + MIR3 SINE MIR 67 156 -52 2201 74 11 0 chr4 122351022 122351293 -61937369 - AluY SINE Alu -12 299 26 255 269 30 0 chr4 122351368 122351435 -61937227 + L3 LINE CR1 1329 1397 -180 703 181 294 0 chr4 122351926 122351966 -61936696 - MER3 DNA MER1_type -2 207 180 183 100 0 0 chr4 122351966 122351996 -61936666 + (TTAAA)n Simple_repeat Simple_repeat 1 30 0 703 181 294 0 chr4 122351996 122352115 -61936547 - MER3 DNA MER1_type -29 180 1 186 133 0 0 chr4 122353384 122353414 -61935248 + (TA)n Simple_repeat Simple_repeat 1 30 0 247 306 19 9 chr4 122353454 122353562 -61935100 + (CATATA)n Simple_repeat Simple_repeat 2 110 0 204 364 85 0 chr4 122354355 122354484 -61934178 - L2 LINE L2 0 3272 3133 233 244 0 49 chr4 122354997 122355120 -61933542 + (TATATG)n Simple_repeat Simple_repeat 6 122 0 293 298 113 8 chr4 122356643 122356767 -61931895 + MIR SINE MIR 25 161 -101 270 304 109 0 chr4 122357239 122357331 -61931331 - MIR SINE MIR -12 250 149 273 263 135 30 chr4 122357829 122357962 -61930700 - MIR SINE MIR -115 147 1 230 190 0 17 chr4 122358428 122358486 -61930176 + CT-rich Low_complexity Low_complexity 2 58 0 1766 157 63 101 chr4 122358750 122358790 -61929872 - MLT2D LTR ERVL -3 411 371 428 0 19 0 chr4 122358790 122358842 -61929820 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 1766 157 63 101 chr4 122358842 122359227 -61929435 - MLT2D LTR ERVL -43 371 2 276 143 0 0 chr4 122359807 122359863 -61928799 + (TG)n Simple_repeat Simple_repeat 2 57 0 238 242 105 46 chr4 122360041 122360194 -61928468 - L2 LINE L2 -243 3029 2868 247 282 68 43 chr4 122360475 122360592 -61928070 - L2 LINE L2 0 3272 3153 555 161 53 72 chr4 122360660 122360812 -61927850 + MER34B LTR ERV1 5 144 -421 377 101 21 26 chr4 122361177 122361258 -61927404 - AluSc SINE Alu -8 291 238 4283 110 152 94 chr4 122361258 122362539 -61926123 + pTR5 LTR ERV1 760 2438 0 1604 142 0 29 chr4 122362542 122362788 -61925874 - AluSg SINE Alu -71 239 1 23 0 0 0 chr4 122363045 122363068 -61925594 + AT_rich Low_complexity Low_complexity 1 23 0 213 39 0 0 chr4 122363205 122363231 -61925431 + (TC)n Simple_repeat Simple_repeat 1 26 0 830 250 68 0 chr4 122363264 122363456 -61925206 - MER63A DNA MER1_type -5 205 1 357 203 0 16 chr4 122363481 122363545 -61925117 + L2 LINE L2 3221 3283 -30 5598 71 0 1 chr4 122363587 122364248 -61924414 - PABL_A LTR ERV1 0 660 1 1410 188 54 12 chr4 122364435 122364752 -61923910 - MER61B LTR ERV1 -2 423 1 222 310 26 17 chr4 122365348 122365464 -61923198 + CT-rich Low_complexity Low_complexity 2 118 0 617 262 35 12 chr4 122365560 122365732 -61922930 - LTR39 LTR ERV1 0 783 608 1266 162 20 86 chr4 122365851 122366153 -61922509 - LTR39 LTR ERV1 -501 282 1 396 218 20 70 chr4 122366369 122366500 -61922162 + MLT1J2 LTR MaLR 17 178 -322 367 201 145 35 chr4 122366570 122366712 -61921950 + MLT1J2 LTR MaLR 294 402 -7 467 297 8 8 chr4 122366732 122366860 -61921802 - MLT1K LTR MaLR -323 265 138 422 255 147 82 chr4 122367450 122367632 -61921030 - L2 LINE L2 -970 2344 2133 6750 82 2 2 chr4 122367632 122368874 -61919788 + L1PA10 LINE L1 4924 6168 0 422 255 147 82 chr4 122368874 122368997 -61919665 - L2 LINE L2 -1181 2133 2019 189 256 23 0 chr4 122369371 122369414 -61919248 - L2 LINE L2 -19 3294 3251 584 138 8 114 chr4 122371165 122371288 -61917374 + FLAM_C SINE Alu 1 110 -33 38 0 0 0 chr4 122371294 122371332 -61917330 + AT_rich Low_complexity Low_complexity 1 38 0 184 289 22 0 chr4 122371609 122371654 -61917008 - L2 LINE L2 -557 2757 2712 713 192 24 0 chr4 122371696 122371821 -61916841 + FLAM_C SINE Alu 1 128 -5 1972 129 156 13 chr4 122372009 122372381 -61916281 + MSTA LTR MaLR 2 426 -2 8997 133 24 40 chr4 122372385 122373977 -61914685 + MSTA-int LTR MaLR 3 1570 -10 4068 98 2 0 chr4 122373977 122374530 -61914132 - MER41A LTR ERV1 0 554 1 8997 133 24 40 chr4 122374530 122374541 -61914121 + MSTA-int LTR MaLR 1570 1580 0 1995 171 116 10 chr4 122374541 122374928 -61913734 + MSTA LTR MaLR 1 428 0 612 353 19 13 chr4 122374929 122375241 -61913421 - L1M2 LINE L1 -6407 442 129 1419 151 167 16 chr4 122375242 122375547 -61913115 + MSTA LTR MaLR 78 428 0 393 260 10 0 chr4 122375548 122375652 -61913010 + MIR SINE MIR 70 174 -88 1549 249 72 11 chr4 122376243 122376712 -61911950 - LTR26 LTR ERV1 -2 601 104 2060 98 27 33 chr4 122376826 122376956 -61911706 + L1MA2 LINE L1 5941 6070 -234 2111 118 0 7 chr4 122376956 122377266 -61911396 + AluSx SINE Alu 1 308 0 2060 98 27 33 chr4 122377266 122377472 -61911190 + L1MA2 LINE L1 6070 6278 -26 2229 107 3 0 chr4 122377472 122377770 -61910892 + AluSp SINE Alu 1 299 -14 2060 98 27 33 chr4 122377770 122377797 -61910865 + L1MA2 LINE L1 6278 6304 0 378 0 0 0 chr4 122377879 122377921 -61910741 + (TG)n Simple_repeat Simple_repeat 1 42 0 312 228 11 87 chr4 122378071 122378163 -61910499 + MER21B LTR ERV1 12 96 -767 3048 243 20 23 chr4 122378166 122378945 -61909717 + MER21B LTR ERV1 18 794 -69 1900 161 84 41 chr4 122379022 122379464 -61909198 - MER65C LTR ERV1 0 461 1 338 127 0 16 chr4 122379543 122379606 -61909056 + (GGGA)n Simple_repeat Simple_repeat 4 65 0 296 272 33 11 chr4 122380576 122380668 -61907994 + (TATATG)n Simple_repeat Simple_repeat 2 95 0 1289 253 81 45 chr4 122381008 122381538 -61907124 + MLT1H LTR MaLR 1 549 0 1800 193 59 46 chr4 122383386 122383847 -61904815 + MLT1C LTR MaLR 1 467 0 1901 168 0 57 chr4 122383867 122384254 -61904408 - MLT1A2 LTR MaLR 0 374 10 450 305 214 19 chr4 122385016 122385386 -61903276 - L2 LINE L2 -1 3312 2871 881 281 138 30 chr4 122386717 122386879 -61901783 + MLT1L LTR MaLR 103 246 -369 1570 143 186 50 chr4 122386879 122387256 -61901406 + MSTA LTR MaLR 1 428 0 881 281 138 30 chr4 122387256 122387556 -61901106 + MLT1L LTR MaLR 246 615 0 3553 134 3 22 chr4 122387580 122388207 -61900455 - MER67C LTR ERV1 -2 708 94 1776 97 97 31 chr4 122388207 122388527 -61900135 + L1MA2 LINE L1 5964 6304 0 394 172 17 69 chr4 122388544 122388660 -61900002 - MER67C LTR ERV1 -600 110 1 336 266 184 44 chr4 122388938 122389096 -61899566 + MER91A DNA MER1_type 1 180 -16 2033 167 28 26 chr4 122389185 122389464 -61899198 - MLT1B LTR MaLR 0 390 108 2268 110 7 0 chr4 122389464 122389765 -61898897 - AluSg SINE Alu -7 303 1 2033 167 28 26 chr4 122389765 122389874 -61898788 - MLT1B LTR MaLR -282 108 1 618 307 58 5 chr4 122389985 122390174 -61898488 + MIR SINE MIR 18 216 -46 674 171 107 44 chr4 122390280 122390344 -61898318 - LTR37A LTR ERV1 0 426 367 2193 97 7 0 chr4 122390344 122390633 -61898029 + AluSg SINE Alu 16 306 -4 674 171 107 44 chr4 122390633 122390773 -61897889 - LTR37A LTR ERV1 -59 367 209 303 267 70 0 chr4 122390977 122391063 -61897599 + MIR3 SINE MIR 117 208 0 2616 169 13 13 chr4 122391520 122391992 -61896670 + MER70A LTR ERVL 1 472 0 251 220 0 20 chr4 122393027 122393077 -61895585 - MIR SINE MIR -183 79 31 1188 163 30 15 chr4 122393409 122393612 -61895050 - AluJo SINE Alu -22 290 85 941 173 0 24 chr4 122394716 122394884 -61893778 + FRAM SINE Alu 1 163 -13 1581 199 7 7 chr4 122395128 122395471 -61893191 - AluJo SINE Alu 0 343 1 749 250 54 54 chr4 122395667 122396035 -61892627 + MER87 LTR ERV1 174 541 0 580 275 10 26 chr4 122396190 122396383 -61892279 + MLT1H LTR MaLR 39 228 -321 362 219 35 26 chr4 122396532 122396646 -61892016 + MLT1H LTR MaLR 431 545 -4 861 175 0 0 chr4 122396646 122396783 -61891879 + FLAM_C SINE Alu 1 137 -6 303 164 0 0 chr4 122397495 122397556 -61891106 + CT-rich Low_complexity Low_complexity 1 61 0 538 194 0 0 chr4 122397809 122397907 -61890755 + FLAM_A SINE Alu 34 131 -11 493 97 0 97 chr4 122398378 122398471 -61890191 - FLAM_A SINE Alu -4 138 55 27 0 0 0 chr4 122398688 122398715 -61889947 + AT_rich Low_complexity Low_complexity 1 27 0 312 91 0 0 chr4 122399272 122399316 -61889346 + (TTCC)n Simple_repeat Simple_repeat 3 46 0 1633 160 15 0 chr4 122399331 122399593 -61889069 - AluJb SINE Alu -1 311 46 752 130 12 37 chr4 122399986 122400148 -61888514 + L1MA7 LINE L1 6130 6287 -4 24 0 0 0 chr4 122400149 122400173 -61888489 + AT_rich Low_complexity Low_complexity 1 24 0 2160 131 0 3 chr4 122400976 122401282 -61887380 - AluSx SINE Alu -6 306 2 9965 154 54 15 chr4 122402926 122404670 -61883992 + Ricksha_c DNA DNA 122 1945 -1309 949 169 12 24 chr4 122404670 122404836 -61883826 + FAM SINE Alu 2 165 -10 9965 154 54 15 chr4 122404836 122404939 -61883723 + Ricksha_c DNA DNA 1945 2042 -4 451 244 9 9 chr4 122405221 122405336 -61883326 + L1ME3A LINE L1 5527 5641 -525 962 214 108 53 chr4 122405338 122405680 -61882982 + MLT1B LTR MaLR 1 361 -29 1028 83 0 15 chr4 122405825 122405958 -61882704 + AluSq/x SINE Alu 1 131 -181 205 211 0 0 chr4 122405958 122405996 -61882666 + (TA)n Simple_repeat Simple_repeat 1 38 0 334 337 61 18 chr4 122406019 122406182 -61882480 + L1ME3A LINE L1 5793 5962 -208 250 259 76 23 chr4 122407282 122407413 -61881249 + MER103 DNA DNA 2 139 -27 306 286 0 22 chr4 122407851 122407942 -61880720 + L1MC4 LINE L1 6615 6703 -1339 * 318 311 0 0 chr4 122407862 122407952 -61880710 - L1MC4 LINE L1 -1339 6703 6614 222 301 0 0 chr4 122407968 122408051 -61880611 + (TG)n Simple_repeat Simple_repeat 1 83 0 1783 171 20 3 chr4 122408840 122409144 -61879518 - AluJb SINE Alu -3 309 1 692 295 24 0 chr4 122409232 122409486 -61879176 + MIR SINE MIR 3 262 0 220 336 86 0 chr4 122409580 122409696 -61878966 + L2 LINE L2 2585 2710 -604 300 357 55 65 chr4 122409728 122410019 -61878643 + L1MEc LINE L1 -8 279 -6031 315 0 0 0 chr4 122410032 122410067 -61878595 + (AAATG)n Simple_repeat Simple_repeat 3 37 0 2376 75 3 3 chr4 122410117 122410422 -61878240 - AluY SINE Alu -6 305 1 2423 53 232 136 chr4 122410448 122410978 -61877684 + LTR12 LTR ERV1 1 581 -133 2088 120 0 0 chr4 122411490 122411781 -61876881 + AluSx SINE Alu 19 309 -3 466 262 57 63 chr4 122411822 122412241 -61876421 + L1MEc LINE L1 976 1257 -4862 240 0 162 0 chr4 122412241 122412278 -61876384 + MADE1 DNA Mariner 1 43 -37 609 266 51 40 chr4 122412294 122412569 -61876093 + L1MEc LINE L1 1426 1703 -4607 228 293 29 23 chr4 122412582 122412756 -61875906 + L1MEc LINE L1 1788 1962 -4348 1091 245 98 38 chr4 122412763 122413241 -61875421 - MLT1G1 LTR MaLR -11 584 9 2116 267 112 15 chr4 122413326 122414474 -61874188 - L1M4 LINE L1 -1084 5062 3803 470 283 85 13 chr4 122414526 122414753 -61873909 - L1M4 LINE L1 -2467 3679 3439 840 271 55 24 chr4 122415399 122415654 -61873008 - MLT1E LTR MaLR -6 587 325 28 0 0 0 chr4 122415881 122415909 -61872753 + AT_rich Low_complexity Low_complexity 1 28 0 5550 132 16 26 chr4 122416458 122416921 -61871741 + L1PB1 LINE L1 4531 4997 -1154 2329 98 0 7 chr4 122416921 122417226 -61871436 + AluSc SINE Alu 1 303 -6 5550 132 16 26 chr4 122417226 122418400 -61870262 + L1PB1 LINE L1 4997 6149 -2 2317 92 3 0 chr4 122418542 122418845 -61869817 - AluY SINE Alu -7 304 1 1772 149 43 3 chr4 122418859 122419160 -61869502 - AluSq SINE Alu 0 313 1 514 62 123 0 chr4 122419301 122419382 -61869280 + L1PB1 LINE L1 6059 6149 -2 383 281 130 51 chr4 122419495 122419523 -61869139 + L1MC/D LINE L1 5267 5291 -1272 2279 99 3 0 chr4 122419523 122419826 -61868836 - AluY SINE Alu -7 304 1 2102 91 40 13 chr4 122419828 122420126 -61868536 - AluSq SINE Alu -7 306 1 383 281 130 51 chr4 122420126 122420582 -61868080 + L1MC/D LINE L1 5291 5804 -759 247 333 31 0 chr4 122421800 122421896 -61866766 + MIR SINE MIR 53 151 -111 2137 118 0 0 chr4 122421948 122422235 -61866427 + AluY SINE Alu 1 287 -24 29 0 0 0 chr4 122422235 122422264 -61866398 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr4 122423056 122423091 -61865571 + AT_rich Low_complexity Low_complexity 1 35 0 265 211 221 0 chr4 122423490 122423585 -61865077 + L2 LINE L2 3193 3308 -5 208 267 58 47 chr4 122424057 122424143 -61864519 + MIR3 SINE MIR 11 97 -111 441 0 0 0 chr4 122425658 122425707 -61862955 + (CA)n Simple_repeat Simple_repeat 2 50 0 207 0 0 0 chr4 122426141 122426164 -61862498 + (T)n Simple_repeat Simple_repeat 1 23 0 2300 75 0 3 chr4 122426553 122426847 -61861815 - AluY SINE Alu -18 293 1 184 227 68 68 chr4 122427417 122427505 -61861157 - L2 LINE L2 -181 3091 3004 1087 279 110 28 chr4 122427957 122428555 -61860107 - L2 LINE L2 0 3313 2677 219 206 382 0 chr4 122428583 122428651 -61860011 - L2 LINE L2 -568 2746 2653 540 286 90 17 chr4 122429610 122429844 -61858818 + MIR SINE MIR 2 252 -10 564 172 66 0 chr4 122429886 122430008 -61858654 + L1M4 LINE L1 4898 5027 -1119 * 2570 186 41 59 chr4 122429999 122430497 -61858165 + L1M4 LINE L1 4677 5145 -1017 2124 92 27 7 chr4 122430497 122430791 -61857871 - AluY SINE Alu -11 300 1 2570 186 41 59 chr4 122430791 122431137 -61857525 + L1M4 LINE L1 5145 5496 -666 1260 220 156 12 chr4 122431158 122431562 -61857100 + MLT1C LTR MaLR 6 467 0 443 156 133 0 chr4 122431562 122431652 -61857010 + L1M4 LINE L1 5502 5603 -575 2004 138 20 7 chr4 122432271 122432569 -61856093 + AluJb SINE Alu 1 302 -10 448 348 25 39 chr4 122432736 122432940 -61855722 + L2 LINE L2 3072 3272 0 679 279 112 5 chr4 122433108 122433305 -61855357 - MIR SINE MIR -33 229 12 201 344 44 44 chr4 122433292 122433460 -61855202 + L2 LINE L2 2698 2868 -446 * 2370 91 0 0 chr4 122433460 122433767 -61854895 - AluSg SINE Alu -3 307 1 201 344 44 44 chr4 122433767 122433778 -61854884 + L2 LINE L2 2867 2877 -437 1423 216 73 18 chr4 122436449 122436885 -61851777 - LTR40c LTR ERVL -5 460 1 2464 213 36 32 chr4 122436923 122437586 -61851076 - HERVL40 LTR ERVL -40 5490 4825 701 258 46 46 chr4 122437589 122437849 -61850813 - HERVL40 LTR ERVL -3135 2395 2136 2000 140 73 44 chr4 122437849 122437918 -61850744 - Tigger2a DNA MER2_type -2274 434 368 1923 130 17 3 chr4 122437918 122438211 -61850451 - AluSx SINE Alu -15 297 1 2000 140 73 44 chr4 122438211 122438549 -61850113 - Tigger2a DNA MER2_type -2340 368 15 1926 143 19 0 chr4 122438549 122438871 -61849791 + MER7A DNA MER2_type 15 340 -6 478 195 188 13 chr4 122438877 122439026 -61849636 - HERVL40 LTR ERVL -4413 1117 943 1689 169 8 68 chr4 122439294 122439679 -61848983 - MER93b LTR ERV1 -11 362 1 1369 201 97 35 chr4 122439727 122439754 -61848908 - LTR40c LTR ERVL -6 459 435 1196 178 64 123 chr4 122439754 122440175 -61848487 + MSTD LTR MaLR 1 396 0 1369 201 97 35 chr4 122440175 122440579 -61848083 - LTR40c LTR ERVL -30 435 1 652 264 107 45 chr4 122440685 122440749 -61847913 - MIR SINE MIR 0 262 203 1885 145 62 52 chr4 122440749 122441135 -61847527 - MLT1B LTR MaLR 0 390 1 652 264 107 45 chr4 122441135 122441312 -61847350 - MIR SINE MIR -59 203 6 6449 136 24 30 chr4 122443142 122443764 -61844898 + L1M1 LINE L1 4080 4705 -1599 183 42 0 0 chr4 122443764 122443788 -61844874 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6449 136 24 30 chr4 122443788 122444866 -61843796 + L1M1 LINE L1 4705 5773 -531 373 114 0 56 chr4 122444866 122444943 -61843719 + AluS SINE Alu 1 64 -239 1189 124 53 10 chr4 122444945 122445154 -61843508 - L1MA1 LINE L1 -252 6050 5833 2087 33 0 0 chr4 122445154 122445394 -61843268 + AluY SINE Alu 70 309 -2 3221 94 47 12 chr4 122445394 122445907 -61842755 + L1MA1 LINE L1 5772 6302 0 827 193 41 0 chr4 122445937 122446108 -61842554 - MSTD LTR MaLR 0 396 219 486 62 0 86 chr4 122446154 122446235 -61842427 - MSTD LTR MaLR -321 75 2 1690 106 0 109 chr4 122447311 122447632 -61841030 - MER4A LTR ERV1 0 664 379 21 0 0 0 chr4 122447673 122447694 -61840968 + AT_rich Low_complexity Low_complexity 1 21 0 620 299 58 19 chr4 122448414 122448828 -61839834 - L1ME4a LINE L1 -109 6012 5583 511 233 17 8 chr4 122448855 122448975 -61839687 - FRAM SINE Alu -5 171 51 354 238 226 30 chr4 122449308 122449476 -61839186 - L1ME4a LINE L1 -525 5596 5396 2546 62 0 3 chr4 122449519 122449827 -61838835 + AluSc SINE Alu 1 307 -2 322 332 54 50 chr4 122449852 122450093 -61838569 - L1ME4a LINE L1 -1036 5110 4869 386 298 51 19 chr4 122450591 122450749 -61837913 + MIR3 SINE MIR 38 200 -8 361 219 21 0 chr4 122450874 122450970 -61837692 + L1MB3 LINE L1 6077 6174 -9 27 87 0 0 chr4 122450989 122451058 -61837604 + AT_rich Low_complexity Low_complexity 1 69 0 1919 149 17 0 chr4 122451079 122451368 -61837294 + AluJb SINE Alu 5 298 -14 216 0 0 0 chr4 122451872 122451896 -61836766 + (TC)n Simple_repeat Simple_repeat 1 24 0 285 317 0 10 chr4 122452440 122452541 -61836121 + L1ME LINE L1 5464 5563 -558 1014 32 0 0 chr4 122452740 122452864 -61835798 + L1PA4 LINE L1 6029 6152 -3 2249 87 0 3 chr4 122453225 122453513 -61835149 - AluSq SINE Alu -26 287 1 1548 145 14 14 chr4 122453602 122453898 -61834764 + L1MC3 LINE L1 7408 7703 -82 1529 188 86 48 chr4 122453898 122454271 -61834391 + MSTD LTR MaLR 1 387 -9 417 138 0 35 chr4 122454281 122454368 -61834294 + L1MC3 LINE L1 7701 7784 -1 354 296 58 35 chr4 122455362 122455534 -61833128 + MER5B DNA MER1_type 2 177 -1 332 123 31 0 chr4 122455618 122455683 -61832979 + L1ME3A LINE L1 5842 5908 -262 * 455 183 0 67 chr4 122455682 122455802 -61832860 + L1MB7 LINE L1 6010 6121 -63 551 72 12 0 chr4 122455822 122455905 -61832757 - AluSx SINE Alu -6 306 223 1668 119 0 0 chr4 122455948 122456166 -61832496 - AluSx SINE Alu -94 218 1 22 70 0 0 chr4 122456189 122456232 -61832430 + AT_rich Low_complexity Low_complexity 1 43 0 659 253 16 57 chr4 122456239 122456484 -61832178 + L1ME3A LINE L1 5894 6128 -42 293 356 20 0 chr4 122456616 122456717 -61831945 + L3b LINE CR1 1364 1466 -117 405 224 0 0 chr4 122457827 122457903 -61830759 - MIR3 SINE MIR -25 183 108 252 167 0 0 chr4 122457992 122458040 -61830622 + (TG)n Simple_repeat Simple_repeat 1 48 0 1834 136 0 57 chr4 122458063 122458379 -61830283 - AluSx SINE Alu -14 298 1 25 31 0 0 chr4 122458386 122458418 -61830244 + AT_rich Low_complexity Low_complexity 1 32 0 274 169 28 84 chr4 122458729 122458800 -61829862 - MIR SINE MIR -84 178 112 243 287 23 0 chr4 122459053 122459140 -61829522 + Charlie7 DNA MER1_type 9 97 -2515 2105 185 93 33 chr4 122459257 122459796 -61828866 + MER77 LTR ERV1 53 599 -6 203 0 0 36 chr4 122459977 122460005 -61828657 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 2162 120 0 7 chr4 122460009 122460301 -61828361 - AluSx SINE Alu -22 290 1 1440 176 25 77 chr4 122460320 122460673 -61827989 - MLT1A1 LTR MaLR -30 335 1 712 205 0 0 chr4 122461576 122461703 -61826959 - FLAM_A SINE Alu -6 127 1 2396 90 0 0 chr4 122461902 122462202 -61826460 + AluY SINE Alu 1 300 -11 234 0 0 0 chr4 122462426 122462452 -61826210 + (A)n Simple_repeat Simple_repeat 1 26 0 2240 124 0 0 chr4 122463405 122463712 -61824950 + AluSg SINE Alu 1 307 -3 2364 224 21 23 chr4 122463966 122464529 -61824133 - REP3 LTR ERV 0 562 1 581 243 39 44 chr4 122464731 122465145 -61823517 - MLT1H LTR MaLR -1 548 55 226 200 53 27 chr4 122465955 122466030 -61822632 - MLT1G1 LTR MaLR -6 589 513 327 261 0 0 chr4 122466185 122466250 -61822412 - MLT1H LTR MaLR -318 231 167 498 285 52 6 chr4 122466831 122467003 -61821659 + L1MC4a LINE L1 5666 5845 -1963 1238 215 96 42 chr4 122467215 122467643 -61821019 - MER39 LTR ERV1 0 707 257 252 241 25 20 chr4 122467612 122467714 -61820948 - MER34 LTR ERV1 -490 52 2 * 27 29 0 0 chr4 122467989 122468023 -61820639 + AT_rich Low_complexity Low_complexity 1 34 0 533 185 58 58 chr4 122468056 122468245 -61820417 + L1MC4 LINE L1 7001 7189 -853 2230 108 3 25 chr4 122468607 122468921 -61819741 + AluSx SINE Alu 2 308 -4 30 27 0 0 chr4 122469278 122469315 -61819347 + AT_rich Low_complexity Low_complexity 1 37 0 483 280 144 17 chr4 122469576 122469812 -61818850 - LTR33 LTR ERVL -9 512 247 358 248 0 35 chr4 122469887 122470000 -61818662 - LTR33 LTR ERVL -401 120 12 21 36 0 0 chr4 122470118 122470146 -61818516 + AT_rich Low_complexity Low_complexity 1 28 0 1464 134 62 13 chr4 122470190 122470512 -61818150 - MSTC LTR MaLR -61 367 1 197 62 0 31 chr4 122470946 122470967 -61817695 + (CA)n Simple_repeat Simple_repeat 2 23 -9 4473 162 62 34 chr4 122470967 122471843 -61816819 + MER54A LTR ERVL 2 901 0 197 62 0 31 chr4 122471843 122471853 -61816809 + (CA)n Simple_repeat Simple_repeat 23 32 0 1942 129 0 0 chr4 122472672 122472978 -61815684 - AluSx SINE Alu 0 326 21 14507 133 63 14 chr4 122473438 122474163 -61814499 - Tigger1 DNA MER2_type 0 2418 1730 2423 82 0 0 chr4 122474163 122474467 -61814195 - AluSg SINE Alu -6 304 1 14507 133 63 14 chr4 122474467 122474739 -61813923 - Tigger1 DNA MER2_type -688 1730 1473 2535 62 3 0 chr4 122474739 122475044 -61813618 - AluY SINE Alu -5 306 1 14507 133 63 14 chr4 122475044 122476349 -61812313 - Tigger1 DNA MER2_type -945 1473 1 2345 89 0 0 chr4 122477996 122478282 -61810380 + AluSp SINE Alu 1 287 -22 426 53 0 0 chr4 122478282 122478339 -61810323 + (CATA)n Simple_repeat Simple_repeat 2 58 0 1245 94 0 0 chr4 122478343 122478502 -61810160 + AluSg/x SINE Alu 134 292 -20 2285 162 58 0 chr4 122479561 122479938 -61808724 + MER57A LTR ERV1 1 399 -4 4729 189 17 12 chr4 122479986 122480104 -61808558 + L1P5 LINE L1 4261 4377 -1774 2141 112 6 10 chr4 122480104 122480418 -61808244 + AluSq SINE Alu 1 313 0 4729 189 17 12 chr4 122480418 122480442 -61808220 + L1P5 LINE L1 4377 4399 -1752 180 0 0 0 chr4 122480442 122480462 -61808200 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4729 189 17 12 chr4 122480462 122481555 -61807107 + L1P5 LINE L1 4399 5503 -648 1885 181 75 73 chr4 122481556 122482103 -61806559 + LTR10A LTR ERV1 1 548 -61 5027 83 3 11 chr4 122482116 122482607 -61806055 + L1PB1 LINE L1 5502 5988 -163 2588 111 53 3 chr4 122482607 122482966 -61805696 - MER51B LTR ERV1 0 377 1 5027 83 3 11 chr4 122482966 122483127 -61805535 + L1PB1 LINE L1 5988 6149 -2 3621 200 37 50 chr4 122483167 122483836 -61804826 + MER57A-int LTR ERV1 13 670 -6867 1934 137 7 3 chr4 122483836 122484128 -61804534 + AluSc SINE Alu 1 293 -16 3621 200 37 50 chr4 122484128 122484299 -61804363 + MER57A-int LTR ERV1 670 842 -6695 872 204 82 35 chr4 122484361 122484616 -61804046 + MER34C LTR ERV1 173 439 -146 270 273 0 0 chr4 122484623 122484689 -61803973 + MER57A-int LTR ERV1 1229 1294 -3829 608 127 0 0 chr4 122484791 122484870 -61803792 + AluS SINE Alu 2 80 -232 203 191 24 0 chr4 122484897 122484939 -61803723 + (TATG)n Simple_repeat Simple_repeat 2 44 0 288 167 0 69 chr4 122484946 122485018 -61803644 + MER57A-int LTR ERV1 1504 1570 -216 6079 117 17 14 chr4 122485047 122485976 -61802686 + Tigger1 DNA MER2_type 1307 2238 -180 834 202 15 50 chr4 122485985 122486038 -61802624 + MER57-int LTR ERV1 3151 3204 -3127 2503 81 0 3 chr4 122486038 122486347 -61802315 - AluSp SINE Alu -5 308 1 834 202 15 50 chr4 122486347 122486491 -61802171 + MER57-int LTR ERV1 3204 3341 -2990 537 211 18 0 chr4 122486547 122486656 -61802006 + MER57-int LTR ERV1 3354 3464 -2867 373 151 4 15 chr4 122486744 122486843 -61801819 + MER57-int LTR ERV1 1833 2889 -3195 6988 205 36 48 chr4 122486915 122487105 -61801557 + MER57-int LTR ERV1 1928 2119 -5418 2271 112 7 0 chr4 122487105 122487409 -61801253 + AluSq SINE Alu 1 306 -7 6988 205 36 48 chr4 122487409 122489211 -61799451 + MER57-int LTR ERV1 2119 5817 -1720 6780 187 25 17 chr4 122489354 122490730 -61797932 + MER57-int LTR ERV1 4734 7031 -506 2483 35 0 3 chr4 122490775 122491091 -61797571 + AluY SINE Alu 1 315 0 2176 189 0 30 chr4 122491091 122491498 -61797164 + MER57A LTR ERV1 9 403 0 771 162 11 128 chr4 122491731 122491910 -61796752 - FRAM SINE Alu -6 160 3 1646 217 75 45 chr4 122492085 122492527 -61796135 - LTR16A1 LTR ERVL 0 457 3 200 130 22 0 chr4 122492781 122492827 -61795835 + CT-rich Low_complexity Low_complexity 2 48 0 554 188 154 0 chr4 122494215 122494332 -61794330 - MIR SINE MIR -10 252 118 567 299 54 22 chr4 122494332 122494556 -61794106 - MIR SINE MIR -10 252 22 1815 177 0 13 chr4 122494740 122495050 -61793612 + AluJo SINE Alu 1 306 -6 701 171 132 0 chr4 122495090 122495219 -61793443 - MER45A DNA AcHobo -32 146 1 249 128 0 0 chr4 122495349 122495396 -61793266 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 747 276 90 21 chr4 122495669 122495948 -61792714 + L1MD3 LINE L1 6448 6745 -1250 2266 105 3 0 chr4 122495954 122496260 -61792402 - AluSg SINE Alu -3 307 1 714 130 98 24 chr4 122496380 122496503 -61792159 - AluY SINE Alu -178 133 2 1282 235 99 56 chr4 122497037 122497473 -61791189 - L2 LINE L2 -1487 1827 1360 2205 114 0 7 chr4 122497473 122497780 -61790882 + AluSg SINE Alu 1 305 -5 1282 235 99 56 chr4 122497780 122497901 -61790761 - L2 LINE L2 -1954 1360 1246 2374 89 0 3 chr4 122498706 122499009 -61789653 + AluSg SINE Alu 1 302 -8 286 325 42 45 chr4 122499323 122499588 -61789074 + L1ME LINE L1 5348 5611 -510 1955 128 41 0 chr4 122499732 122500022 -61788640 + AluSx SINE Alu 1 302 -10 251 291 36 0 chr4 122500075 122500185 -61788477 + L1ME LINE L1 5724 5837 -284 2141 102 35 0 chr4 122501097 122501381 -61787281 + AluSg SINE Alu 1 294 -16 5919 104 24 62 chr4 122502113 122503962 -61784700 + SVA Other Other 1 932 -454 5629 27 3 2 chr4 122504089 122504709 -61783953 + SVA Other Other 758 1378 -8 2195 125 3 0 chr4 122504879 122505190 -61783472 - AluSx SINE Alu 0 312 1 637 337 167 8 chr4 122505291 122505692 -61782970 - L3 LINE CR1 -433 1144 680 451 357 67 11 chr4 122505713 122506088 -61782574 + L1MC4a LINE L1 5530 5925 -1883 1656 159 3 32 chr4 122506444 122506758 -61781904 + AluJb SINE Alu 6 310 -2 23 54 0 0 chr4 122507220 122507257 -61781405 + AT_rich Low_complexity Low_complexity 1 37 0 2280 100 3 28 chr4 122507819 122508138 -61780524 + AluSx SINE Alu 1 311 -1 575 261 112 112 chr4 122508256 122508874 -61779788 - L1MC4a LINE L1 -1876 5932 5315 2182 109 0 0 chr4 122509453 122509761 -61778901 + AluSx SINE Alu 1 308 0 17268 100 39 27 chr4 122509946 122510702 -61777960 - Charlie3 DNA MER1_type 0 2706 1961 2134 123 3 0 chr4 122510702 122511002 -61777660 - AluSx SINE Alu -11 301 1 17268 100 39 27 chr4 122511002 122512003 -61776659 - Charlie3 DNA MER1_type -745 1961 974 1999 111 0 0 chr4 122512003 122512274 -61776388 - AluSx SINE Alu 0 312 42 17268 100 39 27 chr4 122512274 122512989 -61775673 - Charlie3 DNA MER1_type -1732 974 160 1934 141 28 0 chr4 122512989 122513273 -61775389 - AluSx SINE Alu -20 292 1 17268 100 39 27 chr4 122513273 122513366 -61775296 - Charlie3 DNA MER1_type -2546 160 70 304 231 138 75 chr4 122513937 122514097 -61774565 - L2 LINE L2 -19 3294 3125 621 295 56 49 chr4 122514201 122514525 -61774137 - L1ME4a LINE L1 -194 5927 5598 1814 157 3 10 chr4 122514525 122514831 -61773831 + AluJb SINE Alu 1 304 -8 621 295 56 49 chr4 122514831 122514954 -61773708 - L1ME4a LINE L1 -523 5598 5477 5037 145 16 15 chr4 122515018 122515886 -61772776 - L1MB7 LINE L1 -16 6168 5300 1268 218 65 57 chr4 122516165 122516655 -61772007 + MER39 LTR ERV1 1 585 0 2347 88 0 13 chr4 122516701 122517018 -61771644 + AluSp SINE Alu 1 313 0 444 278 108 116 chr4 122518140 122518776 -61769886 - L1M2 LINE L1 -5879 970 340 25 31 0 0 chr4 122519101 122519133 -61769529 + GC_rich Low_complexity Low_complexity 1 32 0 249 224 103 17 chr4 122519510 122519626 -61769036 + MIR SINE MIR 67 192 -70 431 178 133 0 chr4 122519712 122519802 -61768860 - MER5A DNA MER1_type -87 102 1 1140 180 33 5 chr4 122520762 122520973 -61767689 + MER20 DNA MER1_type 3 219 0 984 149 11 6 chr4 122521063 122521237 -61767425 - L1PB1 LINE L1 -1 6150 5976 216 0 0 0 chr4 122522321 122522345 -61766317 + (A)n Simple_repeat Simple_repeat 1 24 0 318 303 34 8 chr4 122522549 122522668 -61765994 - MIR3 SINE MIR -1 207 86 1904 145 42 0 chr4 122523760 122524049 -61764613 - AluSx SINE Alu -11 301 1 348 24 0 0 chr4 122524682 122524723 -61763939 + (TG)n Simple_repeat Simple_repeat 2 42 0 1233 176 36 13 chr4 122525520 122525806 -61762856 - MER61B LTR ERV1 -36 389 4 3108 163 82 18 chr4 122526128 122526811 -61761851 + LTR8A LTR ERV1 1 727 0 183 371 46 33 chr4 122527013 122527164 -61761498 + L2 LINE L2 2331 2483 -831 269 320 113 94 chr4 122527500 122527756 -61760906 + L2 LINE L2 3004 3264 -8 21 0 0 0 chr4 122528051 122528072 -61760590 + AT_rich Low_complexity Low_complexity 1 21 0 265 269 43 21 chr4 122529905 122529998 -61758664 - MIR SINE MIR -44 218 124 598 151 48 8 chr4 122530352 122530379 -61758283 - MER7A DNA MER2_type -2862 176 152 1810 149 117 0 chr4 122530379 122530688 -61757974 + MER7A DNA MER2_type 1 343 -3 598 151 48 8 chr4 122530688 122530786 -61757876 - MER7A DNA MER2_type -2886 152 48 180 0 0 0 chr4 122530886 122530906 -61757756 + (CAA)n Simple_repeat Simple_repeat 2 21 0 265 269 43 21 chr4 122531828 122531921 -61756741 - MIR SINE MIR -44 218 124 598 151 48 8 chr4 122532275 122532302 -61756360 - MER7A DNA MER2_type -2862 176 152 1810 149 117 0 chr4 122532302 122532611 -61756051 + MER7A DNA MER2_type 1 343 -3 598 151 48 8 chr4 122532611 122532709 -61755953 - MER7A DNA MER2_type -2886 152 48 180 0 0 0 chr4 122532809 122532829 -61755833 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1921 168 15 45 chr4 122533235 122533634 -61755028 - MLT1B LTR MaLR 0 390 4 532 155 211 21 chr4 122534631 122534773 -61753889 + MER58B DNA MER1_type 173 341 0 23 54 0 0 chr4 122536381 122536418 -61752244 + AT_rich Low_complexity Low_complexity 1 37 0 647 325 107 18 chr4 122536578 122537025 -61751637 - L2 LINE L2 -172 3100 2597 15182 125 14 10 chr4 122537071 122537952 -61750710 - Tigger1 DNA MER2_type -2 2416 1540 898 102 27 0 chr4 122537952 122538099 -61750563 + CT-rich Low_complexity Low_complexity 2 152 0 1620 211 0 0 chr4 122538101 122538381 -61750281 - AluJo SINE Alu -32 280 1 15182 125 14 10 chr4 122538381 122539903 -61748759 - Tigger1 DNA MER2_type -878 1540 1 1954 171 47 20 chr4 122541001 122541048 -61747614 - MLT2D LTR ERVL 0 414 370 524 55 0 14 chr4 122541048 122541121 -61747541 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 1954 171 47 20 chr4 122541121 122541476 -61747186 - MLT2D LTR ERVL -44 370 1 3403 41 2 0 chr4 122542640 122543056 -61745606 + L1PA7 LINE L1 5736 6152 -2 189 322 58 41 chr4 122543240 122543361 -61745301 - L2 LINE L2 -2009 1305 1183 2199 141 0 0 chr4 122543424 122543728 -61744934 + AluSx SINE Alu 1 304 -8 230 316 21 0 chr4 122544010 122544105 -61744557 + GA-rich Low_complexity Low_complexity 1 97 0 308 331 102 6 chr4 122544616 122544773 -61743889 + MIR3 SINE MIR 3 174 -34 523 276 54 32 chr4 122545268 122545489 -61743173 + MIR SINE MIR 37 262 0 451 288 200 38 chr4 122545528 122545848 -61742814 - MLT1H1 LTR MaLR 0 555 224 2000 156 0 10 chr4 122546461 122546775 -61741887 + AluJb SINE Alu 1 311 -1 218 333 18 0 chr4 122547181 122547238 -61741424 + L2 LINE L2 3215 3272 0 380 307 16 8 chr4 122549698 122549825 -61738837 + L2 LINE L2 3186 3313 0 21 0 0 0 chr4 122550001 122550022 -61738640 + AT_rich Low_complexity Low_complexity 1 21 0 1444 144 62 28 chr4 122550058 122550349 -61738313 - L1MD1 LINE L1 0 6242 5942 24 32 0 0 chr4 122551293 122551324 -61737338 + AT_rich Low_complexity Low_complexity 1 31 0 2072 134 3 10 chr4 122551826 122552140 -61736522 - AluSx SINE Alu 0 312 1 485 219 35 26 chr4 122552648 122552762 -61735900 + L2 LINE L2 3199 3313 0 23 33 0 0 chr4 122552822 122552852 -61735810 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr4 122553096 122553117 -61735545 + (CA)n Simple_repeat Simple_repeat 2 22 0 191 300 136 43 chr4 122553335 122553475 -61735187 + L2 LINE L2 1918 2070 -1244 311 312 32 32 chr4 122553477 122553631 -61735031 - L1 LINE L1 -1551 4595 4442 1231 160 19 30 chr4 122553782 122553889 -61734773 - L1MD3 LINE L1 -1 7994 7887 1931 159 3 7 chr4 122553889 122554197 -61734465 - AluJb SINE Alu -5 307 1 1231 160 19 30 chr4 122554197 122554358 -61734304 - L1MD3 LINE L1 -108 7887 7729 254 329 68 92 chr4 122554466 122554925 -61733737 + L2 LINE L2 2043 2490 -824 208 245 20 0 chr4 122554925 122554974 -61733688 + CT-rich Low_complexity Low_complexity 2 51 0 465 327 87 81 chr4 122555170 122555629 -61733033 + L2 LINE L2 2811 3272 0 254 348 22 0 chr4 122555700 122555792 -61732870 + MIR3 SINE MIR 108 201 -7 285 300 9 9 chr4 122555792 122555902 -61732760 + MARNA DNA Mariner 354 463 -123 233 384 13 44 chr4 122556034 122556193 -61732469 + L3 LINE CR1 1423 1576 -1 22 35 0 0 chr4 122556455 122556484 -61732178 + AT_rich Low_complexity Low_complexity 1 29 0 342 222 74 30 chr4 122556742 122556877 -61731785 - L1MC5 LINE L1 -433 7528 7388 184 304 30 95 chr4 122556896 122557064 -61731598 + L2 LINE L2 2904 3060 -212 766 248 61 49 chr4 122557175 122557582 -61731080 - MLT2C2 LTR ERVL -52 412 1 427 281 47 16 chr4 122557753 122557881 -61730781 - L2 LINE L2 -5 3267 3136 335 308 19 25 chr4 122557927 122558086 -61730576 - L1MC5 LINE L1 -322 7639 7482 1140 204 181 2 chr4 122558534 122558700 -61729962 - L1MEc LINE L1 -3034 3907 3772 1710 174 26 3 chr4 122558700 122559026 -61729636 - AluSx SINE Alu 0 312 1 1140 204 181 2 chr4 122559026 122559257 -61729405 - L1MEc LINE L1 -3169 3772 3439 3822 167 77 25 chr4 122559266 122559529 -61729133 + L1MB8 LINE L1 4930 5178 -1000 2603 33 3 0 chr4 122559529 122559832 -61728830 + AluY SINE Alu 1 304 -7 3822 167 77 25 chr4 122559832 122560755 -61727907 + L1MB8 LINE L1 5178 6171 -7 843 144 15 0 chr4 122560954 122561086 -61727576 - AluJb SINE Alu -178 134 1 676 251 146 6 chr4 122561240 122561582 -61727080 - L1MEc LINE L1 -3647 3294 2905 6471 69 13 0 chr4 122561591 122562608 -61726054 - L1PA8A LINE L1 0 6131 5102 14453 116 10 0 chr4 122562608 122564914 -61723748 - L1PA8A LINE L1 -1324 4822 2494 5132 197 6 30 chr4 122564925 122566461 -61722201 + L1P3 LINE L1 951 2447 -4014 338 237 52 31 chr4 122566461 122566558 -61722104 - L1MEc LINE L1 -4178 2944 2846 332 316 71 55 chr4 122566777 122567030 -61721632 - L1MEc LINE L1 -5956 467 211 29 47 0 0 chr4 122568056 122568099 -61720563 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr4 122568281 122568303 -61720359 + AT_rich Low_complexity Low_complexity 1 22 0 246 200 108 0 chr4 122568455 122568520 -61720142 - MER103 DNA DNA -85 81 10 2290 77 3 0 chr4 122568966 122569251 -61719411 + AluY SINE Alu 1 286 -25 393 328 109 5 chr4 122569949 122570141 -61718521 - MIR SINE MIR -50 212 1 656 313 107 0 chr4 122570269 122570502 -61718160 + MIR SINE MIR 2 259 -3 2165 121 0 10 chr4 122570544 122570851 -61717811 - AluSx SINE Alu -8 304 1 278 361 85 0 chr4 122571458 122571588 -61717074 - L2 LINE L2 -16 3256 3116 1000 305 131 22 chr4 122571902 122572551 -61716111 - L2 LINE L2 -430 2884 2165 21 57 0 0 chr4 122573083 122573118 -61715544 + AT_rich Low_complexity Low_complexity 1 35 0 718 267 93 141 chr4 122573246 122574756 -61713906 + L2 LINE L2 1616 3051 -221 2194 104 56 37 chr4 122574948 122575303 -61713359 + THE1B LTR MaLR 3 364 0 11646 89 6 9 chr4 122575303 122576577 -61712085 + THE1B-int LTR MaLR 1 1272 -308 2367 83 0 7 chr4 122576577 122576879 -61711783 + AluY SINE Alu 1 300 -11 11646 89 6 9 chr4 122576879 122577188 -61711474 + THE1B-int LTR MaLR 1272 1580 0 2228 106 63 17 chr4 122577188 122577536 -61711126 + THE1B LTR MaLR 1 364 0 404 73 0 0 chr4 122577772 122577827 -61710835 + Alu SINE Alu 242 296 -16 1079 162 0 23 chr4 122577856 122578029 -61710633 - AluJo SINE Alu -141 171 3 2194 122 0 3 chr4 122582025 122582328 -61706334 + AluSx SINE Alu 1 302 -10 565 317 7 0 chr4 122582709 122582851 -61705811 - MIR3 SINE MIR -29 179 37 382 268 134 9 chr4 122583074 122583186 -61705476 - L2 LINE L2 -1 3312 3187 4917 138 116 108 chr4 122583350 122583721 -61704941 - L1MC3 LINE L1 -6 7779 7413 1999 160 3 6 chr4 122583721 122584034 -61704628 - AluJo SINE Alu 0 312 1 4917 138 116 108 chr4 122584034 122584210 -61704452 - L1MC3 LINE L1 -372 7413 7240 302 226 19 75 chr4 122584210 122584316 -61704346 - MLT1F1 LTR MaLR -433 134 35 4917 138 116 108 chr4 122584316 122584848 -61703814 - L1MC3 LINE L1 -545 7240 6578 2208 97 0 0 chr4 122584848 122585152 -61703510 + AluSg SINE Alu 1 304 0 4917 138 116 108 chr4 122585152 122585290 -61703372 - L1MC3 LINE L1 -1207 6578 6443 891 116 0 0 chr4 122585522 122585643 -61703019 - AluJb SINE Alu -191 121 1 816 240 56 0 chr4 122585675 122585871 -61702791 - MER82 DNA MER2_type -1 652 446 295 314 98 46 chr4 122585906 122586100 -61702562 + MIR SINE MIR 6 209 -53 251 250 38 12 chr4 122586100 122586180 -61702482 + (TA)n Simple_repeat Simple_repeat 1 82 0 477 158 21 32 chr4 122586181 122586276 -61702386 - MER82 DNA MER2_type -558 95 2 1155 159 35 110 chr4 122587750 122587916 -61700746 + MER33 DNA MER1_type 2 130 -2455 2070 123 7 23 chr4 122587916 122588216 -61700446 - AluJb SINE Alu -17 295 1 1155 159 35 110 chr4 122588216 122588394 -61700268 + MER33 DNA MER1_type 130 320 -4 21 0 0 0 chr4 122588752 122588773 -61699889 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 122589409 122589437 -61699225 + AT_rich Low_complexity Low_complexity 1 28 0 942 171 186 0 chr4 122589633 122589832 -61698830 - MER46A DNA MER2_type 0 236 1 369 346 54 44 chr4 122590628 122590833 -61697829 + L2 LINE L2 3066 3272 0 325 254 0 0 chr4 122591725 122591788 -61696874 - L2 LINE L2 0 3272 3210 1721 165 14 7 chr4 122592372 122592657 -61696005 - AluJb SINE Alu -25 287 1 810 196 22 0 chr4 122593154 122593292 -61695370 + FRAM SINE Alu 1 141 -35 1688 182 113 50 chr4 122593300 122593779 -61694883 - LTR22 LTR ERVK 0 509 1 461 140 190 0 chr4 122593830 122593930 -61694732 - LTR22 LTR ERVK -388 121 3 449 269 171 17 chr4 122593932 122594107 -61694555 - MIR SINE MIR -43 219 18 188 227 91 0 chr4 122595654 122595698 -61692964 - L2 LINE L2 -1 3271 3224 577 289 60 39 chr4 122595879 122596163 -61692499 + L2 LINE L2 3024 3313 0 22 94 0 0 chr4 122596455 122596519 -61692143 + AT_rich Low_complexity Low_complexity 1 64 0 798 122 53 15 chr4 122596900 122597031 -61691631 - MER5A DNA MER1_type -1 188 53 1162 205 211 6 chr4 122597037 122597393 -61691269 + LTR50 LTR ERVL 16 444 -351 242 264 2 37 chr4 122597479 122597570 -61691092 + MER34B LTR ERV1 41 130 -412 256 182 10 141 chr4 122597834 122597933 -61690729 + LTR48 LTR ERV1 701 786 -1 2163 107 10 0 chr4 122597942 122598231 -61690431 - AluSg SINE Alu -18 292 1 215 263 263 0 chr4 122598251 122598350 -61690312 + MIR SINE MIR 102 226 -36 689 76 0 11 chr4 122598350 122598442 -61690220 - LTR12 LTR ERV1 -9 705 615 294 273 10 0 chr4 122598444 122598543 -61690119 - LTR30 LTR ERV1 -79 643 544 623 83 0 0 chr4 122598548 122598632 -61690030 - LTR12 LTR ERV1 -442 272 189 359 284 0 0 chr4 122599683 122599778 -61688884 + ERVL LTR ERVL 2766 2860 -2904 3946 107 32 21 chr4 122599806 122600306 -61688356 + MER41B LTR ERV1 1 494 -141 2019 126 3 16 chr4 122600306 122600616 -61688046 - AluSx SINE Alu -6 306 1 3946 107 32 21 chr4 122600616 122600627 -61688035 + MER41B LTR ERV1 494 503 -132 2403 76 3 0 chr4 122600627 122600930 -61687732 - AluY SINE Alu -7 304 1 3946 107 32 21 chr4 122600930 122601045 -61687617 + MER41B LTR ERV1 503 635 0 1541 150 62 0 chr4 122601225 122601498 -61687164 + MER49 LTR ERV1 5 294 -629 1295 208 27 70 chr4 122601536 122601907 -61686755 + MER4D LTR ERV1 549 903 0 1077 171 11 0 chr4 122602248 122602423 -61686239 - AluJb SINE Alu -15 297 121 314 239 76 33 chr4 122602457 122602549 -61686113 + MIR SINE MIR 59 154 -108 304 279 180 18 chr4 122603922 122604033 -61684629 - MIR3 SINE MIR -44 164 36 259 169 77 15 chr4 122604323 122604388 -61684274 - MIR SINE MIR -168 94 26 540 346 70 29 chr4 122605059 122605455 -61683207 + L2 LINE L2 2816 3272 0 2303 117 29 0 chr4 122605924 122606275 -61682387 - MER46B DNA MER2_type 0 236 1 2351 124 25 6 chr4 122606309 122606665 -61681997 - MLT1A1 LTR MaLR 0 365 3 929 193 27 49 chr4 122607168 122607391 -61681271 - L2 LINE L2 -17 3296 3079 196 253 84 43 chr4 122607710 122607882 -61680780 - MIR SINE MIR -26 236 2 994 291 50 56 chr4 122607932 122608375 -61680287 - L2 LINE L2 -3 3310 2871 1379 150 0 9 chr4 122608452 122608678 -61679984 + AluJb SINE Alu 85 308 -4 193 206 0 0 chr4 122609174 122609208 -61679454 + L2 LINE L2 3264 3297 -16 2286 258 77 30 chr4 122609209 122610143 -61678519 + L2 LINE L2 2305 3261 -52 22 56 0 0 chr4 122610590 122610626 -61678036 + AT_rich Low_complexity Low_complexity 1 36 0 206 121 0 0 chr4 122610903 122610936 -61677726 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 2494 39 0 0 chr4 122612202 122612520 -61676142 - AluY SINE Alu 0 318 1 195 42 0 0 chr4 122613341 122613365 -61675297 + (TAA)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr4 122614851 122614872 -61673790 + AT_rich Low_complexity Low_complexity 1 21 0 1803 148 31 17 chr4 122615489 122615780 -61672882 + AluJb SINE Alu 1 295 -17 22 0 0 0 chr4 122616400 122616422 -61672240 + AT_rich Low_complexity Low_complexity 1 22 0 22 94 0 0 chr4 122616574 122616638 -61672024 + AT_rich Low_complexity Low_complexity 1 64 0 22 0 0 0 chr4 122617949 122617971 -61670691 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 122620098 122620121 -61668541 + AT_rich Low_complexity Low_complexity 1 23 0 669 198 36 88 chr4 122620201 122620393 -61668269 + MER5A DNA MER1_type 4 185 -4 287 197 45 15 chr4 122620849 122620915 -61667747 + Tigger7 DNA MER2_type 3 70 -480 1489 165 19 0 chr4 122620921 122621188 -61667474 - Tigger7 DNA MER2_type -204 346 75 * 1597 133 108 13 chr4 122621186 122621501 -61667161 + Tigger7 DNA MER2_type 2143 2487 0 244 320 51 0 chr4 122622050 122622128 -61666534 + L2 LINE L2 3191 3272 0 265 232 146 0 chr4 122622517 122622599 -61666063 - MIR SINE MIR -45 217 124 208 240 40 0 chr4 122622823 122622873 -61665789 + L2 LINE L2 3252 3303 -10 565 198 64 0 chr4 122622943 122623100 -61665562 - L1ME2 LINE L1 -1 6163 5997 377 275 176 58 chr4 122623150 122623339 -61665323 + L2 LINE L2 2154 2392 -922 2283 105 0 0 chr4 122623339 122623634 -61665028 - AluSc SINE Alu -14 295 1 377 275 176 58 chr4 122623634 122623739 -61664923 + L2 LINE L2 2392 2483 -831 294 217 17 0 chr4 122624035 122624095 -61664567 - MIR SINE MIR -96 112 52 529 230 97 6 chr4 122624396 122624561 -61664101 + MIR SINE MIR 83 262 0 1108 129 106 14 chr4 122625392 122625442 -61663220 + L1MA3 LINE L1 6069 6113 -192 1838 154 34 0 chr4 122625442 122625740 -61662922 + AluJo SINE Alu 1 308 -4 1108 129 106 14 chr4 122625740 122625906 -61662756 + L1MA3 LINE L1 6113 6305 0 436 268 164 27 chr4 122626033 122626253 -61662409 - MIR SINE MIR 0 262 13 195 184 0 0 chr4 122628495 122628533 -61660129 + (TA)n Simple_repeat Simple_repeat 1 38 0 1610 172 26 23 chr4 122629818 122629952 -61658710 + AluJb SINE Alu 1 133 -179 2206 117 7 0 chr4 122629952 122630252 -61658410 + AluSq SINE Alu 1 302 -11 1610 172 26 23 chr4 122630252 122630420 -61658242 + AluJb SINE Alu 133 304 -8 1187 148 0 16 chr4 122630528 122630711 -61657951 - AluJo SINE Alu -102 210 31 2049 146 0 19 chr4 122631832 122632147 -61656515 - AluSg SINE Alu -1 309 1 2576 55 13 0 chr4 122632325 122632634 -61656028 - AluSp SINE Alu 0 313 1 241 304 38 13 chr4 122632796 122632875 -61655787 - MIR3 SINE MIR -6 202 122 42169 43 1 3 chr4 122632886 122639046 -61649616 - L1PA4 LINE L1 -3 6152 2 24 32 0 0 chr4 122639760 122639791 -61648871 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr4 122640449 122640477 -61648185 + AT_rich Low_complexity Low_complexity 1 28 0 370 203 72 80 chr4 122640839 122640977 -61647685 - L1ME4a LINE L1 -1 6120 5984 443 179 0 0 chr4 122640978 122641056 -61647606 - MER2 DNA MER2_type 0 345 268 22 35 0 0 chr4 122641066 122641095 -61647567 + AT_rich Low_complexity Low_complexity 1 29 0 766 128 0 0 chr4 122641107 122641224 -61647438 + Tigger2 DNA MER2_type 1 117 -2601 249 30 0 0 chr4 122641225 122641258 -61647404 + Tigger2 DNA MER2_type 2506 2538 -180 5530 27 6 2 chr4 122641359 122641980 -61646682 + SVA Other Other 755 1378 -8 2204 125 3 0 chr4 122642150 122642461 -61646201 - AluSx SINE Alu 0 312 1 682 337 167 8 chr4 122642562 122642963 -61645699 - L3 LINE CR1 -433 1144 680 314 357 67 11 chr4 122642984 122643359 -61645303 + L1MC4a LINE L1 5530 5925 -1883 1686 162 3 32 chr4 122643715 122644029 -61644633 + AluJb SINE Alu 6 310 -2 23 54 0 0 chr4 122644491 122644528 -61644134 + AT_rich Low_complexity Low_complexity 1 37 0 2284 100 3 28 chr4 122645090 122645409 -61643253 + AluSx SINE Alu 1 311 -1 305 287 30 85 chr4 122645527 122645691 -61642971 - L1MC4a LINE L1 -1876 5932 5778 464 301 166 22 chr4 122645726 122646135 -61642527 - L1MC4a LINE L1 -2020 5788 5321 2179 109 0 0 chr4 122646725 122647033 -61641629 + AluSx SINE Alu 1 308 0 11367 99 20 21 chr4 122647218 122647973 -61640689 - Charlie3 DNA MER1_type 0 2706 1952 2132 124 3 0 chr4 122647973 122648272 -61640390 - AluSx SINE Alu -12 300 1 11367 99 20 21 chr4 122648272 122649273 -61639389 - Charlie3 DNA MER1_type -750 1956 950 2189 119 7 0 chr4 122649273 122649575 -61639087 - AluSq SINE Alu 0 313 10 2065 140 24 21 chr4 122649706 122650042 -61638620 - MER1B DNA MER1_type 0 337 1 369 308 104 33 chr4 122650502 122650713 -61637949 + L2 LINE L2 2451 2676 -638 240 271 66 33 chr4 122650741 122650863 -61637799 - L2 LINE L2 -1024 2290 2165 317 331 38 15 chr4 122650876 122651009 -61637653 - L2 LINE L2 -38 3275 3140 261 384 48 0 chr4 122651056 122651202 -61637460 - L2 LINE L2 -1179 2135 1983 647 249 107 11 chr4 122651213 122651390 -61637272 - MIR SINE MIR -11 251 58 2199 118 7 0 chr4 122652001 122652298 -61636364 + AluSx SINE Alu 1 299 -13 232 373 136 0 chr4 122652343 122652453 -61636209 - MIR3 SINE MIR -39 169 45 25 0 0 0 chr4 122652617 122652642 -61636020 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr4 122653568 122653598 -61635064 + AT_rich Low_complexity Low_complexity 1 30 0 328 365 34 20 chr4 122653662 122653810 -61634852 - MIR3 SINE MIR -2 206 57 197 304 157 0 chr4 122654237 122654339 -61634323 + L2 LINE L2 2884 3001 -271 208 280 27 40 chr4 122654368 122654443 -61634219 + MIR3 SINE MIR 94 167 -41 1776 168 14 7 chr4 122654905 122655190 -61633472 + AluJo SINE Alu 6 292 -20 725 200 0 15 chr4 122655446 122655581 -61633081 - FLAM_C SINE Alu 0 133 1 828 172 61 0 chr4 122655763 122655926 -61632736 - L1MC2 LINE L1 -8 6336 6164 708 267 134 47 chr4 122656065 122657669 -61630993 - L1ME3A LINE L1 -5 6234 4406 2988 161 82 9 chr4 122657669 122658229 -61630433 + MER7C DNA MER2_type 2 602 0 513 77 0 0 chr4 122658253 122658318 -61630344 - Alu SINE Alu -15 297 233 1743 124 29 0 chr4 122658324 122658598 -61630064 + Tigger3(Golem) DNA MER2_type 2747 3028 -1 1266 101 222 14 chr4 122658621 122658828 -61629834 - AluSg1 SINE Alu -21 288 39 1629 268 82 33 chr4 122658841 122658903 -61629759 - L1MEc LINE L1 -1826 4389 4331 1833 178 7 7 chr4 122658903 122659207 -61629455 + AluJb SINE Alu 1 304 -8 1629 268 82 33 chr4 122659207 122661318 -61627344 - L1MEc LINE L1 -1884 4331 2095 1320 202 50 25 chr4 122661474 122661756 -61626906 - AluJo SINE Alu -23 289 1 35 41 0 0 chr4 122661910 122661959 -61626703 + AT_rich Low_complexity Low_complexity 1 49 0 280 172 52 0 chr4 122662266 122662324 -61626338 - Tigger5 DNA MER2_type -1 2322 2262 287 173 21 121 chr4 122662328 122662426 -61626236 - Tigger5 DNA MER2_type -2130 193 51 2271 99 3 0 chr4 122662426 122662718 -61625944 - AluSp SINE Alu -20 293 1 287 173 21 121 chr4 122662718 122662764 -61625898 - Tigger5 DNA MER2_type -2272 51 2 1173 141 116 113 chr4 122662845 122663208 -61625454 - MLT1A1 LTR MaLR -1 364 1 1027 266 149 2 chr4 122663218 122663621 -61625041 - LTR40b LTR ERVL 0 462 1 4414 183 15 23 chr4 122664909 122665917 -61622745 - MER52A LTR ERV1 0 1755 881 297 206 16 0 chr4 122665900 122665963 -61622699 - MER52A LTR ERV1 -714 1041 978 * 4054 196 145 19 chr4 122665969 122666951 -61621711 - MER52A LTR ERV1 -650 1105 1 609 195 23 0 chr4 122667271 122667399 -61621263 - L1MD1 LINE L1 0 6242 6112 1318 152 39 0 chr4 122667399 122667603 -61621059 + AluJb SINE Alu 1 212 -100 292 74 56 0 chr4 122667707 122667761 -61620901 + Tigger2 DNA MER2_type 61 117 -2601 1181 142 39 0 chr4 122667762 122667967 -61620695 + Tigger2 DNA MER2_type 2506 2718 0 913 151 62 6 chr4 122667967 122668146 -61620516 - MER2 DNA MER2_type -155 190 2 414 0 0 0 chr4 122668173 122668219 -61620443 + (CA)n Simple_repeat Simple_repeat 2 47 0 1465 141 21 13 chr4 122668344 122668578 -61620084 - LTR32 LTR ERVL 0 471 236 265 108 0 0 chr4 122668581 122668618 -61620044 - LTR32 LTR ERVL -422 49 13 851 189 42 16 chr4 122668624 122668815 -61619847 - HERVL32 LTR ERVL -6 3412 3217 251 358 0 0 chr4 122669217 122669354 -61619308 - PRIMA41-int LTR ERV1 -1293 6463 6327 2345 87 3 3 chr4 122670126 122670425 -61618237 - AluSq SINE Alu -14 299 1 1010 156 29 6 chr4 122671022 122671195 -61617467 - MER2 DNA MER2_type -168 177 1 309 51 0 0 chr4 122671219 122671258 -61617404 + (CA)n Simple_repeat Simple_repeat 2 40 0 10967 235 69 53 chr4 122671396 122674817 -61613845 - HERVL32 LTR ERVL -205 3213 7 1321 168 25 17 chr4 122674824 122675062 -61613600 - LTR32 LTR ERVL 0 471 232 240 139 0 0 chr4 122675062 122675098 -61613564 - LTR32 LTR ERVL -422 49 14 * 496 222 29 69 chr4 122675095 122675253 -61613409 - MSTC LTR MaLR -292 136 1 715 127 75 15 chr4 122676117 122676251 -61612411 + AluJb SINE Alu 158 299 -13 11100 174 40 38 chr4 122676258 122679197 -61609465 - L1MA9 LINE L1 -119 7659 4704 2445 82 3 0 chr4 122679197 122679503 -61609159 - AluSg SINE Alu -3 307 1 11100 174 40 38 chr4 122679503 122680112 -61608550 - L1MA9 LINE L1 -3074 4704 4097 1661 187 9 3 chr4 122680112 122680438 -61608224 + L1PBa LINE L1 1409 1736 -5127 * 8950 200 18 14 chr4 122680437 122681452 -61607210 - L1 LINE L1 -1629 4517 3507 2136 115 3 22 chr4 122681452 122681766 -61606896 - AluSp SINE Alu -5 308 1 8950 200 18 14 chr4 122681766 122682815 -61605847 - L1 LINE L1 -2639 3507 2445 1811 108 11 0 chr4 122682815 122683076 -61605586 + L1PB2 LINE L1 5866 6136 -15 23 33 0 0 chr4 122683081 122683111 -61605551 + AT_rich Low_complexity Low_complexity 1 30 0 1548 239 23 3 chr4 122683114 122683503 -61605159 - L1MA9 LINE L1 -3454 4111 3715 1467 251 105 40 chr4 122683669 122684488 -61604174 - L1MA9 LINE L1 -3906 3659 2788 73 69 0 0 chr4 122684742 122684844 -61603818 + AT_rich Low_complexity Low_complexity 1 102 0 684 115 0 0 chr4 122684892 122685014 -61603648 + (T)n Simple_repeat Simple_repeat 1 122 0 211 320 13 13 chr4 122685137 122685215 -61603447 - MIR SINE MIR -170 92 15 596 115 10 0 chr4 122685404 122685500 -61603162 - AluSg/x SINE Alu -5 307 211 371 202 21 32 chr4 122685753 122685847 -61602815 + MIR3 SINE MIR 81 173 -35 292 253 0 24 chr4 122685876 122685959 -61602703 + GA-rich Low_complexity Low_complexity 2 82 0 180 0 0 0 chr4 122686509 122686529 -61602133 + (TTG)n Simple_repeat Simple_repeat 2 21 0 181 196 22 22 chr4 122686670 122686716 -61601946 + L2 LINE L2 3268 3313 0 750 174 65 76 chr4 122687343 122687527 -61601135 - MER5A DNA MER1_type -7 182 1 218 373 51 25 chr4 122687537 122687695 -61600967 + MER5B DNA MER1_type 1 162 -16 598 228 67 22 chr4 122687742 122687922 -61600740 - MER5A DNA MER1_type -1 188 1 21 36 0 0 chr4 122688782 122688810 -61599852 + AT_rich Low_complexity Low_complexity 1 28 0 275 317 105 24 chr4 122689795 122689994 -61598668 + MIR SINE MIR 50 257 -5 2010 135 3 7 chr4 122690288 122690576 -61598086 - AluSx SINE Alu -16 296 10 2044 140 24 21 chr4 122690707 122691043 -61597619 - MER1B DNA MER1_type 0 337 1 21 0 0 0 chr4 122691848 122691869 -61596793 + AT_rich Low_complexity Low_complexity 1 21 0 602 190 15 0 chr4 122692489 122692626 -61596036 - L1MEc LINE L1 -3099 3116 2978 2414 270 78 25 chr4 122692627 122693803 -61594859 - L1MEc LINE L1 -4349 2047 810 185 132 26 0 chr4 122693822 122693860 -61594802 + T-rich Low_complexity Low_complexity 2 40 0 458 193 6 114 chr4 122693899 122694065 -61594597 - L1MEc LINE L1 -5566 830 683 204 280 160 0 chr4 122694752 122694827 -61593835 + L2 LINE L2 3186 3272 0 273 163 38 7 chr4 122694894 122694957 -61593705 - MLT2B3 LTR ERVL 0 554 357 396 181 0 0 chr4 122694959 122695042 -61593620 + (TAGA)n Simple_repeat Simple_repeat 3 85 0 3040 164 26 21 chr4 122695042 122695573 -61593089 - MLT2B3 LTR ERVL -20 534 1 423 139 0 0 chr4 122695591 122695663 -61592999 - L1MB8 LINE L1 -5 6173 6102 455 334 48 70 chr4 122696384 122696698 -61591964 - L2 LINE L2 0 3272 2966 294 212 45 21 chr4 122697108 122697211 -61591451 + L1MD3 LINE L1 7294 7610 -385 1802 72 8 1 chr4 122697862 122698132 -61590530 - L1PA8 LINE L1 -30 6144 5870 362 93 0 0 chr4 122698132 122698184 -61590478 + L1PA8 LINE L1 6116 6169 -3 2541 79 126 20 chr4 122698250 122698655 -61590007 + LTR7 LTR ERV1 1 448 -2 1261 128 10 0 chr4 122698657 122698852 -61589810 + HERVH LTR ERV1 1 197 -7516 2434 79 7 0 chr4 122699867 122700170 -61588492 - AluY SINE Alu -6 305 1 772 176 71 18 chr4 122700807 122700977 -61587685 + MER7A DNA MER2_type 1 177 -169 1129 236 99 6 chr4 122701090 122701424 -61587238 - L1MC4 LINE L1 -424 7618 7254 2160 137 0 3 chr4 122701426 122701739 -61586923 + AluSx SINE Alu 1 312 0 244 321 23 8 chr4 122701783 122701914 -61586748 - L1MC4a LINE L1 -831 6977 6845 324 164 90 0 chr4 122701974 122702041 -61586621 + MIR SINE MIR 189 261 -1 4137 190 92 5 chr4 122702112 122703031 -61585631 - L1MA6 LINE L1 0 6300 5302 583 294 25 6 chr4 122704343 122704506 -61584156 - MIR SINE MIR -46 216 51 415 285 34 53 chr4 122704609 122704800 -61583862 - MIR3 SINE MIR -11 197 1 25 0 0 0 chr4 122704881 122704906 -61583756 + AT_rich Low_complexity Low_complexity 1 25 0 294 297 14 0 chr4 122706162 122706236 -61582426 + MER58 DNA MER1_type 205 279 -2141 23 0 0 0 chr4 122706428 122706451 -61582211 + AT_rich Low_complexity Low_complexity 1 23 0 2118 107 3 19 chr4 122706511 122706821 -61581841 - AluSc SINE Alu -4 305 1 310 244 51 0 chr4 122707594 122707672 -61580990 + MIR3 SINE MIR 124 205 -3 380 224 90 58 chr4 122708224 122708380 -61580282 + MER104 DNA Tc2 16 176 -4 946 141 86 5 chr4 122709283 122709481 -61579181 - L1MA7 LINE L1 -5 6286 6073 1871 108 4 8 chr4 122710447 122710707 -61577955 - AluSx SINE Alu -14 298 40 285 306 19 32 chr4 122710779 122710995 -61577667 - L1M3de LINE L1 -4685 1968 1756 1335 82 6 6 chr4 122711316 122711487 -61577175 - AluSg/x SINE Alu -33 279 109 262 167 21 0 chr4 122711587 122711635 -61577027 - L1MC3 LINE L1 -445 7340 7292 691 245 23 9 chr4 122711636 122711810 -61576852 + MER8 DNA MER2_type 2 177 -62 823 173 80 6 chr4 122711888 122712050 -61576612 - L1MC3 LINE L1 -492 7293 7120 290 368 108 0 chr4 122712081 122712247 -61576415 - MIR SINE MIR -76 186 3 395 285 39 8 chr4 122712615 122712745 -61575917 + MIR SINE MIR 5 138 -124 2200 196 7 19 chr4 122712904 122713224 -61575438 - MER47B DNA MER2_type -1905 418 103 2030 94 0 75 chr4 122713224 122713542 -61575120 + AluSg1 SINE Alu 1 294 -15 2200 196 7 19 chr4 122713542 122713644 -61575018 - MER47B DNA MER2_type -2220 103 1 2064 132 0 3 chr4 122714487 122714782 -61573880 + AluSx SINE Alu 3 296 -16 186 323 31 46 chr4 122715133 122715198 -61573464 - MIR SINE MIR -177 85 22 22 0 0 0 chr4 122715206 122715228 -61573434 + AT_rich Low_complexity Low_complexity 1 22 0 2453 59 3 13 chr4 122715766 122716071 -61572591 - AluSp SINE Alu -11 302 1 1732 209 32 3 chr4 122716549 122716894 -61571768 + MLT1A1 LTR MaLR 11 365 0 46 0 0 0 chr4 122716978 122717024 -61571638 + AT_rich Low_complexity Low_complexity 1 46 0 28 0 0 0 chr4 122717571 122717599 -61571063 + AT_rich Low_complexity Low_complexity 1 28 0 6454 52 4 7 chr4 122719264 122720033 -61568629 - SVA Other Other 0 1386 620 4471 80 21 65 chr4 122720133 122720993 -61567669 + SVA Other Other 190 866 -590 219 69 0 0 chr4 122720993 122721022 -61567640 + (CA)n Simple_repeat Simple_repeat 1 29 0 198 118 0 0 chr4 122722855 122722889 -61565773 + (T)n Simple_repeat Simple_repeat 1 34 0 517 120 0 0 chr4 122723385 122723460 -61565202 - MER30B DNA MER1_type -109 81 7 724 194 17 63 chr4 122723879 122724054 -61564608 - L1PA16 LINE L1 0 6166 6000 198 71 0 0 chr4 122724054 122724082 -61564580 + (TTA)n Simple_repeat Simple_repeat 3 30 0 8045 24 5 0 chr4 122724082 122725463 -61563199 - L1PA3 LINE L1 -18 6137 4754 23 0 0 0 chr4 122726029 122726052 -61562610 + AT_rich Low_complexity Low_complexity 1 23 0 370 278 107 47 chr4 122726115 122726582 -61562080 + L1ME4a LINE L1 5349 5843 -278 1642 116 0 0 chr4 122726661 122726893 -61561769 + AluSq SINE Alu 68 299 -14 270 125 0 0 chr4 122727038 122727086 -61561576 + (TG)n Simple_repeat Simple_repeat 2 49 0 284 294 54 0 chr4 122727748 122727840 -61560822 - L1ME4a LINE L1 -56 6065 5969 599 263 67 34 chr4 122727982 122728191 -61560471 + MIR SINE MIR 47 262 0 402 22 0 0 chr4 122728405 122728450 -61560212 + AluSq/x SINE Alu 87 131 -182 1223 177 36 0 chr4 122728550 122728770 -61559892 + MER46A DNA MER2_type 9 236 0 1793 171 3 3 chr4 122729563 122729855 -61558807 + AluJo SINE Alu 9 300 -12 1570 83 115 0 chr4 122730121 122730338 -61558324 + AluY SINE Alu 1 242 -69 1991 248 115 15 chr4 122732390 122732430 -61556232 - L1M3c LINE L1 -4534 2503 2468 2126 127 7 0 chr4 122732430 122732730 -61555932 - AluSc SINE Alu -7 302 1 1991 248 115 15 chr4 122732730 122733886 -61554776 - L1M3c LINE L1 -4569 2468 1429 1539 213 3 29 chr4 122733886 122734201 -61554461 - AluJb SINE Alu -5 307 1 1991 248 115 15 chr4 122734201 122734350 -61554312 - L1M3c LINE L1 -5608 1429 10 1411 222 0 26 chr4 122734622 122734924 -61553738 - AluJo SINE Alu -18 294 1 399 202 18 37 chr4 122734965 122735074 -61553588 + MER103 DNA DNA 2 108 -58 631 291 68 26 chr4 122735148 122735488 -61553174 + MLT1H LTR MaLR 11 364 -185 356 174 20 30 chr4 122735516 122735633 -61553029 + MLT1F1 LTR MaLR 458 549 0 561 257 132 0 chr4 122736939 122737083 -61551579 + MER58C DNA MER1_type 32 194 -21 2471 69 0 34 chr4 122737661 122737981 -61550681 - AluY SINE Alu -2 309 1 2172 117 13 0 chr4 122738079 122738388 -61550274 - AluSp SINE Alu 0 313 1 1730 181 47 47 chr4 122738708 122739073 -61549589 - MLT1A1 LTR MaLR 0 365 1 1414 292 106 32 chr4 122739154 122740018 -61548644 - L1MDa LINE L1 -4184 2537 1514 8286 132 38 2 chr4 122740018 122741273 -61547389 - HSMAR2 DNA Mariner -1 1301 2 1414 292 106 32 chr4 122741273 122741710 -61546952 - L1MDa LINE L1 -5207 1514 1111 550 163 78 7 chr4 122741794 122741935 -61546727 - L1MC4 LINE L1 -130 7912 7762 13730 183 42 24 chr4 122742046 122742266 -61546396 - L1 LINE L1 -910 6655 6440 1530 172 34 20 chr4 122742266 122742562 -61546100 - AluJo SINE Alu -12 300 1 13730 183 42 24 chr4 122742562 122745302 -61543360 - L1 LINE L1 -1125 6440 3612 1901 107 29 29 chr4 122745302 122745582 -61543080 - AluSg SINE Alu -15 295 16 13730 183 42 24 chr4 122745582 122746107 -61542555 - L1 LINE L1 -3953 3612 3098 648 185 40 60 chr4 122746495 122746646 -61542016 + Tigger3(Golem) DNA MER2_type 2879 3026 -3 2225 157 28 8 chr4 122747173 122747530 -61541132 + THE1B LTR MaLR 1 364 0 7908 110 40 53 chr4 122747530 122748829 -61539833 + THE1B-int LTR MaLR 1 1282 -298 7376 26 0 1 chr4 122748829 122749715 -61538947 + L1PA3 LINE L1 5288 6172 0 2390 77 7 0 chr4 122749731 122750041 -61538621 + THE1B-int LTR MaLR 1269 1580 0 2239 122 38 54 chr4 122750041 122750201 -61538461 + THE1B LTR MaLR 1 162 -202 2259 118 0 0 chr4 122750201 122750507 -61538155 - AluSq SINE Alu -7 306 1 2239 122 38 54 chr4 122750507 122750716 -61537946 + THE1B LTR MaLR 162 364 0 189 0 0 0 chr4 122751018 122751039 -61537623 + (TG)n Simple_repeat Simple_repeat 2 22 0 727 266 32 9 chr4 122751894 122752115 -61536547 + MIR SINE MIR 38 262 0 26 0 0 0 chr4 122752248 122752274 -61536388 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr4 122752757 122752778 -61535884 + AT_rich Low_complexity Low_complexity 1 21 0 2125 74 0 0 chr4 122752850 122753106 -61535556 - AluY SINE Alu -20 291 36 262 289 0 0 chr4 122753211 122753294 -61535368 + L1M3a LINE L1 296 378 -5871 447 356 5 34 chr4 122753296 122753504 -61535158 + L1M3a LINE L1 434 635 -5614 2298 239 21 15 chr4 122754209 122754355 -61534307 + L1M3a LINE L1 539 683 -4687 2021 232 64 51 chr4 122754355 122754902 -61533760 + MLT2B3 LTR ERVL 1 554 0 2298 239 21 15 chr4 122754902 122755497 -61533165 + L1M3a LINE L1 683 1273 -4097 43175 43 1 1 chr4 122755606 122760823 -61527839 - L1P LINE L1 -928 5218 2 2172 231 99 12 chr4 122760826 122761509 -61527153 - L1M4 LINE L1 -2214 3932 3175 1981 156 0 13 chr4 122761509 122761817 -61526845 - AluSx SINE Alu -8 304 1 2172 231 99 12 chr4 122761817 122761894 -61526768 - L1M4 LINE L1 -2971 3175 3106 2412 62 0 0 chr4 122762002 122762294 -61526368 - AluY SINE Alu -19 292 1 2183 107 7 0 chr4 122762395 122762685 -61525977 - AluSx SINE Alu -20 292 1 1246 109 0 16 chr4 122762870 122763054 -61525608 + AluY SINE Alu 130 310 -1 1323 165 4 39 chr4 122764535 122764790 -61523872 - AluJb SINE Alu -3 309 64 889 233 26 51 chr4 122765351 122765789 -61522873 + MER52A LTR ERV1 666 1233 -522 2244 179 30 35 chr4 122765974 122766579 -61522083 + pTR5 LTR ERV1 743 1344 -1094 5046 103 20 138 chr4 122766595 122767527 -61521135 + LTR12 LTR ERV1 5 826 0 523 275 19 0 chr4 122767638 122767798 -61520864 + MER52A LTR ERV1 1593 1755 0 1116 212 74 62 chr4 122767947 122768239 -61520423 - MLT1B LTR MaLR 0 390 143 9183 61 2 3 chr4 122768239 122769311 -61519351 - MER11C LTR ERVK 0 1071 1 1116 212 74 62 chr4 122769311 122769456 -61519206 - MLT1B LTR MaLR -247 143 1 2297 102 3 3 chr4 122770211 122770515 -61518147 + AluSp SINE Alu 1 304 -9 2469 146 32 7 chr4 122771531 122771941 -61516721 + MSTB LTR MaLR 7 426 0 2568 103 55 9 chr4 122772009 122772357 -61516305 + THE1B LTR MaLR 1 364 0 347 224 30 75 chr4 122772454 122772588 -61516074 + L2 LINE L2 3134 3261 -52 2251 84 3 30 chr4 122772718 122773016 -61515646 - AluSp SINE Alu -18 295 6 198 0 0 0 chr4 122773681 122773703 -61514959 + (A)n Simple_repeat Simple_repeat 1 22 0 190 180 20 60 chr4 122774124 122774174 -61514488 + MER5B DNA MER1_type 10 57 -121 7391 127 14 21 chr4 122774185 122774229 -61514433 + L1MA3 LINE L1 4435 4478 -1827 2186 66 45 14 chr4 122774229 122774515 -61514147 + AluY SINE Alu 1 295 -16 7391 127 14 21 chr4 122774515 122775209 -61513453 + L1MA3 LINE L1 4478 5176 -1129 2363 51 27 7 chr4 122775209 122775502 -61513160 + AluY SINE Alu 1 299 -12 7391 127 14 21 chr4 122775502 122776650 -61512012 + L1MA3 LINE L1 5176 6305 0 331 288 59 42 chr4 122776767 122776885 -61511777 - L2 LINE L2 -4 3309 3190 1493 204 3 32 chr4 122777017 122777358 -61511304 + AluJo SINE Alu 1 312 0 683 283 68 0 chr4 122777864 122778055 -61510607 + MIR SINE MIR 24 227 -35 202 200 250 33 chr4 122778553 122778613 -61510049 + L2 LINE L2 3152 3224 -48 2278 119 0 0 chr4 122780773 122781083 -61507579 + AluSg SINE Alu 1 310 0 277 212 101 30 chr4 122781153 122781252 -61507410 + L1ME4a LINE L1 6014 6119 -2 1932 94 80 0 chr4 122781687 122781963 -61506699 - AluSc SINE Alu -11 298 1 2223 82 0 57 chr4 122782350 122782665 -61505997 - AluSq SINE Alu -16 297 1 239 273 215 8 chr4 122783917 122784038 -61504624 + MIR3 SINE MIR 1 146 -62 21 36 0 0 chr4 122784361 122784389 -61504273 + AT_rich Low_complexity Low_complexity 1 28 0 240 218 154 51 chr4 122784870 122784948 -61503714 - L2 LINE L2 -10 3262 3177 2315 77 7 3 chr4 122786327 122786626 -61502036 + AluSp SINE Alu 1 300 -13 192 333 0 0 chr4 122786834 122786897 -61501765 + MIR SINE MIR 65 127 -81 1216 123 0 0 chr4 122786899 122787069 -61501593 - AluSp SINE Alu -8 305 136 180 0 0 0 chr4 122787069 122787089 -61501573 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2184 53 0 8 chr4 122787089 122787353 -61501309 - AluY SINE Alu -28 283 22 2276 68 44 0 chr4 122787466 122787762 -61500900 - AluY SINE Alu -2 309 1 2008 113 55 0 chr4 122787887 122788162 -61500500 - AluSx SINE Alu -18 294 5 214 329 141 52 chr4 122788840 122789053 -61499609 + L2 LINE L2 2851 3082 -190 181 259 74 62 chr4 122789304 122789385 -61499277 - L2 LINE L2 -11 3302 3221 1040 164 0 6 chr4 122790103 122790274 -61498388 - AluJ SINE Alu -14 298 129 2342 80 3 10 chr4 122790308 122790607 -61498055 - AluSg SINE Alu -13 297 1 2173 117 20 0 chr4 122790733 122791032 -61497630 + AluSx SINE Alu 1 305 -7 458 122 276 0 chr4 122791039 122791137 -61497525 - AluJ SINE Alu -177 125 1 1346 169 60 90 chr4 122791304 122791605 -61497057 + AluJo SINE Alu 1 292 -20 502 221 47 111 chr4 122793138 122793328 -61495334 - MER5B DNA MER1_type 0 178 1 2356 100 0 0 chr4 122793565 122793875 -61494787 - AluSg SINE Alu 0 310 1 378 216 95 52 chr4 122793920 122794036 -61494626 + MIR3 SINE MIR 87 207 -1 1229 199 55 39 chr4 122794703 122795010 -61493652 + AluJo SINE Alu 1 312 0 261 291 19 39 chr4 122795149 122795252 -61493410 - MER5B DNA MER1_type -30 148 48 530 92 40 0 chr4 122797917 122797993 -61490669 - MADE1 DNA Mariner -1 79 1 252 0 0 0 chr4 122799267 122799295 -61489367 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 2180 89 3 0 chr4 122802513 122802805 -61485857 - AluSx SINE Alu -19 293 1 186 43 0 0 chr4 122802947 122802970 -61485692 + (CA)n Simple_repeat Simple_repeat 2 24 0 331 246 145 120 chr4 122803144 122803635 -61485027 + L1M2 LINE L1 532 1034 -5815 180 152 0 0 chr4 122804035 122804068 -61484594 + T-rich Low_complexity Low_complexity 1 33 0 2177 96 20 3 chr4 122807391 122807684 -61480978 + AluSx SINE Alu 1 298 -14 2337 97 3 0 chr4 122809046 122809355 -61479307 + AluSx SINE Alu 1 310 -2 237 173 0 0 chr4 122809355 122809397 -61479265 + A-rich Low_complexity Low_complexity 8 52 0 2414 42 3 23 chr4 122809429 122809735 -61478927 + AluY SINE Alu 2 301 -10 354 322 116 7 chr4 122809954 122810100 -61478562 + MIR SINE MIR 1 162 -100 280 318 40 24 chr4 122811112 122811238 -61477424 - MARNA DNA Mariner -24 562 435 922 265 109 36 chr4 122811836 122812376 -61476286 - L2 LINE L2 0 3313 2687 2253 84 3 27 chr4 122812376 122812673 -61475989 + AluSx SINE Alu 1 290 -22 922 265 109 36 chr4 122812673 122812684 -61475978 - L2 LINE L2 -626 2687 2678 208 303 132 0 chr4 122813572 122813648 -61475014 - L2 LINE L2 -3 3310 3225 2228 108 10 0 chr4 122814029 122814334 -61474328 - AluSg SINE Alu -2 308 1 2950 188 58 60 chr4 122814343 122814645 -61474017 - HsTC2a DNA MER2_type -1160 740 439 2256 112 0 0 chr4 122814645 122814949 -61473713 - AluSx SINE Alu -7 305 2 2950 188 58 60 chr4 122814949 122815385 -61473277 - HsTC2a DNA MER2_type -1461 439 3 335 273 159 15 chr4 122815391 122815523 -61473139 - MIR SINE MIR -67 195 45 2774 94 16 11 chr4 122815966 122816126 -61472536 + THE1C LTR MaLR 1 159 -216 2285 114 0 0 chr4 122816126 122816433 -61472229 - AluSg SINE Alu -3 307 1 2774 94 16 11 chr4 122816433 122816645 -61472017 + THE1C LTR MaLR 159 375 0 2295 101 0 19 chr4 122816940 122817258 -61471404 + AluSx SINE Alu 1 312 0 2307 116 0 0 chr4 122817441 122817752 -61470910 - AluSx SINE Alu -1 311 1 1562 158 64 4 chr4 122818515 122818781 -61469881 + AluJb SINE Alu 1 282 -30 21 71 0 0 chr4 122819170 122819212 -61469450 + AT_rich Low_complexity Low_complexity 1 42 0 2472 67 0 0 chr4 122819233 122819530 -61469132 - AluY SINE Alu -14 297 1 1209 124 0 0 chr4 122819738 122819916 -61468746 - MSTB-int LTR MaLR -1473 178 1 2457 157 40 45 chr4 122819916 122820342 -61468320 - MSTB LTR MaLR -2 424 1 366 256 0 0 chr4 122820342 122820419 -61468243 + MER94 DNA DNA 53 129 -5 449 314 228 32 chr4 122820444 122821106 -61467556 + L2 LINE L2 2165 2956 -358 339 266 186 8 chr4 122821174 122821298 -61467364 + L2 LINE L2 3116 3261 -11 3066 147 82 18 chr4 122822609 122823168 -61465494 - LTR49 LTR ERV1 0 595 1 21 0 0 0 chr4 122823617 122823638 -61465024 + AT_rich Low_complexity Low_complexity 1 21 0 414 256 51 36 chr4 122823832 122823969 -61464693 - L2 LINE L2 -1 3312 3174 259 213 0 0 chr4 122824318 122824365 -61464297 + L2 LINE L2 3251 3297 -16 1523 180 57 130 chr4 122824408 122824637 -61464025 + MLT1D LTR MaLR 1 245 -260 2264 112 0 0 chr4 122824637 122824931 -61463731 + AluSg SINE Alu 1 294 -16 1523 180 57 130 chr4 122824931 122825246 -61463416 + MLT1D LTR MaLR 245 505 0 5552 218 26 21 chr4 122825351 122827430 -61461232 + L1MD2 LINE L1 3796 5885 -474 190 317 106 41 chr4 122827439 122827562 -61461100 - MIR3 SINE MIR -19 189 59 * 410 282 146 56 chr4 122827528 122827741 -61460921 + MIR SINE MIR 18 249 -13 245 320 60 20 chr4 122827754 122827854 -61460808 - MIR3 SINE MIR -90 118 15 2349 124 135 8 chr4 122828049 122828428 -61460234 - MSTA LTR MaLR -1 427 1 1540 113 30 9 chr4 122828465 122828695 -61459967 - AluY SINE Alu -17 294 60 765 164 0 0 chr4 122828755 122828895 -61459767 + CT-rich Low_complexity Low_complexity 2 141 0 1024 152 48 0 chr4 122828898 122829063 -61459599 - AluJb SINE Alu -2 310 138 2049 111 0 67 chr4 122829544 122829859 -61458803 - AluSx SINE Alu -18 294 1 217 211 125 87 chr4 122830071 122830175 -61458487 + MER5A DNA MER1_type 60 167 -22 * 260 263 102 42 chr4 122830083 122830201 -61458461 - MER5A DNA MER1_type -57 132 8 2425 169 49 5 chr4 122830275 122830683 -61457979 - MSTB LTR MaLR 0 426 1 1551 193 18 82 chr4 122830853 122831253 -61457409 - MLT1A2 LTR MaLR 0 374 1 1432 269 74 20 chr4 122831780 122832389 -61456273 - L1MC4a LINE L1 -1849 5959 5318 622 315 96 83 chr4 122832410 122832617 -61456045 - L1MC4a LINE L1 -2947 3199 2996 2380 72 0 3 chr4 122832617 122832909 -61455753 + AluY SINE Alu 1 291 -20 622 315 96 83 chr4 122832909 122833139 -61455523 - L1MC4a LINE L1 -3150 2996 2770 1995 109 0 35 chr4 122833139 122833451 -61455211 - AluSg SINE Alu -9 301 1 622 315 96 83 chr4 122833451 122833551 -61455111 - L1MC4a LINE L1 -3376 2770 2673 2363 82 0 3 chr4 122833551 122833844 -61454818 - AluY SINE Alu -19 292 1 622 315 96 83 chr4 122833844 122834287 -61454375 - L1MC4a LINE L1 -3473 2673 2205 1559 268 83 38 chr4 122834296 122834849 -61453813 - MLT1E LTR MaLR -8 585 8 524 128 26 0 chr4 122835015 122835093 -61453569 - FLAM_A SINE Alu -17 125 46 985 240 101 36 chr4 122835493 122835810 -61452852 - MLT1I LTR MaLR 0 409 91 1017 60 30 0 chr4 122836361 122836494 -61452168 + L1PA13 LINE L1 6026 6162 -1 2070 117 16 3 chr4 122837583 122837891 -61450771 + AluSp SINE Alu 1 312 -1 458 228 116 93 chr4 122837992 122838251 -61450411 - Charlie8 DNA MER1_type -1996 421 157 1276 145 182 7 chr4 122839333 122839713 -61448949 - MLT2B1 LTR ERVL 0 520 1 2327 107 0 10 chr4 122840601 122840910 -61447752 - AluSp SINE Alu -7 306 1 758 186 0 16 chr4 122841234 122841358 -61447304 + FLAM_A SINE Alu 1 122 -11 281 292 154 15 chr4 122842450 122842580 -61446082 - MIR SINE MIR -77 185 38 356 172 0 0 chr4 122842970 122843028 -61445634 - MLT1K LTR MaLR -22 566 509 264 339 9 9 chr4 122843110 122843219 -61445443 - MLT1K LTR MaLR -358 230 122 276 167 0 100 chr4 122843604 122843694 -61444968 - L2 LINE L2 -74 3239 3159 1548 188 17 14 chr4 122843704 122843996 -61444666 + AluJo SINE Alu 5 297 -15 2147 91 11 0 chr4 122843998 122844283 -61444379 + AluSp SINE Alu 21 308 -5 1890 114 44 0 chr4 122844984 122845283 -61443379 + AluSx SINE Alu 1 311 0 1135 245 287 11 chr4 122845540 122845997 -61442665 - MLT1E LTR MaLR -8 585 3 913 178 0 28 chr4 122846166 122846346 -61442316 + FRAM SINE Alu 1 40 0 404 294 14 41 chr4 122846684 122846830 -61441832 - MIR SINE MIR -56 206 65 196 161 0 0 chr4 122847651 122847682 -61440980 - L2 LINE L2 -786 2528 2498 523 286 51 10 chr4 122848708 122848904 -61439758 + L1ME3A LINE L1 5962 6165 -5 306 0 0 0 chr4 122849747 122849781 -61438881 + (T)n Simple_repeat Simple_repeat 1 34 0 330 223 41 15 chr4 122849922 122850074 -61438588 - MER63 DNA MER1_type -280 781 3 2179 95 7 10 chr4 122850467 122850805 -61437857 - AluSq SINE Alu 0 313 1 240 324 158 29 chr4 122851744 122851985 -61436677 - L2 LINE L2 -11 3302 3031 4171 143 36 8 chr4 122852157 122852823 -61435839 + LTR62 LTR ERVK 2 686 -33 1895 136 32 26 chr4 122853757 122854067 -61434595 - AluJo SINE Alu 0 312 1 2211 163 68 17 chr4 122854654 122855065 -61433597 - MSTB1 LTR MaLR 0 432 1 433 267 67 15 chr4 122857380 122857515 -61431147 - MIR SINE MIR -72 190 49 666 323 16 28 chr4 122857519 122857768 -61430894 + MIR SINE MIR 14 257 -5 429 355 37 18 chr4 122858399 122858635 -61430027 - MIR SINE MIR -19 243 2 1718 176 3 23 chr4 122859208 122859514 -61429148 - AluJo SINE Alu -12 300 1 1925 103 8 0 chr4 122859905 122860158 -61428504 + AluSg SINE Alu 40 294 -16 304 118 0 33 chr4 122860665 122860732 -61427930 + MLT1C LTR MaLR 329 467 0 267 223 175 10 chr4 122861037 122861140 -61427522 - L1ME3A LINE L1 -234 5936 5817 198 0 0 0 chr4 122862549 122862571 -61426091 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 194 241 93 0 chr4 122863210 122863264 -61425398 - MIR SINE MIR -47 215 157 6793 126 12 18 chr4 122863456 122863632 -61425030 - Tigger1 DNA MER2_type -1 2417 2241 2130 113 17 3 chr4 122863632 122863932 -61424730 - AluSx SINE Alu -8 304 1 6793 126 12 18 chr4 122863932 122864801 -61423861 - Tigger1 DNA MER2_type -177 2241 1378 32277 111 9 62 chr4 122864811 122871299 -61417363 + L1PA7 LINE L1 12 6146 -8 2193 111 3 23 chr4 122871299 122871605 -61417057 + AluSg SINE Alu 1 320 0 181 0 0 0 chr4 122871605 122871625 -61417037 + (TAA)n Simple_repeat Simple_repeat 2 180 0 7576 134 62 5 chr4 122871634 122872946 -61415716 - Tigger1 DNA MER2_type -1031 1387 1 525 290 232 0 chr4 122873965 122874237 -61414425 + L2 LINE L2 1213 1547 -1767 1016 79 13 33 chr4 122874802 122874954 -61413708 - L1PA8 LINE L1 -3 6169 6021 424 276 96 39 chr4 122875110 122875266 -61413396 - L2 LINE L2 0 3313 3149 334 283 14 14 chr4 122875272 122875417 -61413245 - ERVL LTR ERVL -4594 1170 1026 587 242 123 79 chr4 122875464 122875782 -61412880 - LTR50 LTR ERVL -463 332 1 2289 108 0 9 chr4 122877182 122877497 -61411165 + AluSx SINE Alu 1 312 0 3987 129 73 25 chr4 122877587 122878396 -61410266 - L1PB4 LINE L1 -4 6152 5298 3047 75 22 201 chr4 122878400 122879142 -61409520 - L1PB1 LINE L1 -1 6150 5542 4110 179 47 13 chr4 122879146 122880130 -61408532 - L1PB4 LINE L1 -816 5330 4314 1984 175 64 58 chr4 122880156 122880658 -61408004 - MLT1D LTR MaLR 0 505 1 510 328 78 34 chr4 122880720 122881077 -61407585 - L1MEd LINE L1 -2997 3132 2760 446 272 121 13 chr4 122881215 122881454 -61407208 - L1MC4a LINE L1 -1939 5869 5605 24 77 0 0 chr4 122882765 122882817 -61405845 + AT_rich Low_complexity Low_complexity 1 52 0 819 169 0 22 chr4 122883186 122883322 -61405340 - FLAM_A SINE Alu 0 133 1 656 238 129 18 chr4 122884162 122884488 -61404174 - L1ME3A LINE L1 -315 5855 5505 450 309 56 75 chr4 122884492 122884719 -61403943 - L1MEd LINE L1 -5421 698 481 2548 57 0 3 chr4 122884719 122885020 -61403642 - AluY SINE Alu -11 300 1 450 309 56 75 chr4 122885020 122885219 -61403443 - L1MEd LINE L1 -5638 481 280 852 220 45 0 chr4 122885539 122885739 -61402923 + MER3 DNA MER1_type 1 209 0 1743 169 10 17 chr4 122885884 122886180 -61402482 + AluJo SINE Alu 1 294 -18 2218 74 0 45 chr4 122886470 122886779 -61401883 + AluY SINE Alu 1 295 -16 2255 123 3 0 chr4 122886910 122887212 -61401450 + AluSx SINE Alu 3 305 -7 199 77 0 0 chr4 122889732 122889758 -61398904 - MIR SINE MIR -10 252 227 2425 84 0 3 chr4 122890305 122890615 -61398047 - AluSc SINE Alu 0 309 1 249 325 56 24 chr4 122891232 122891358 -61397304 - L2 LINE L2 0 3272 3143 250 208 120 48 chr4 122892078 122892112 -61396550 - MER103 DNA DNA -2 164 134 1175 143 124 0 chr4 122892112 122892322 -61396340 - MER46A DNA MER2_type 0 236 1 250 208 120 48 chr4 122892322 122892412 -61396250 - MER103 DNA DNA -32 134 31 1747 208 28 3 chr4 122892412 122892768 -61395894 + MLT1A1 LTR MaLR 1 365 0 2318 113 3 29 chr4 122893262 122893607 -61395055 - MER1B DNA MER1_type -1 336 1 1808 152 67 15 chr4 122893941 122894271 -61394391 - MER7A DNA MER2_type -1 345 1 237 83 0 0 chr4 122894549 122894585 -61394077 + (TG)n Simple_repeat Simple_repeat 2 37 0 690 213 8 0 chr4 122894656 122894783 -61393879 + FLAM_A SINE Alu 1 128 -5 1678 107 0 5 chr4 122895186 122895410 -61393252 + AluSq SINE Alu 83 305 -8 1716 163 23 10 chr4 122898177 122898477 -61390185 - AluJb SINE Alu -8 304 1 588 149 0 11 chr4 122898596 122898690 -61389972 - FLAM_A SINE Alu -18 124 32 22 0 0 0 chr4 122898694 122898716 -61389946 + AT_rich Low_complexity Low_complexity 1 22 0 353 206 206 0 chr4 122898958 122899050 -61389612 - L2 LINE L2 -1 3312 3202 22 0 0 0 chr4 122900519 122900541 -61388121 + AT_rich Low_complexity Low_complexity 1 22 0 327 25 0 0 chr4 122902803 122902843 -61385819 + (CA)n Simple_repeat Simple_repeat 1 40 0 279 173 0 0 chr4 122903828 122903880 -61384782 + (TG)n Simple_repeat Simple_repeat 2 53 0 2412 85 7 0 chr4 122904214 122904521 -61384141 - AluY SINE Alu -2 309 1 1635 229 94 32 chr4 122905200 122905974 -61382688 - L1MC5 LINE L1 -36 7925 7104 1216 134 41 166 chr4 122906038 122906382 -61382280 - AluJb SINE Alu 0 302 2 301 252 204 7 chr4 122906382 122906529 -61382133 - L1MC5 LINE L1 -1914 5894 5719 200 308 43 43 chr4 122907122 122907239 -61381423 + L2 LINE L2 2140 2256 -1058 297 318 43 12 chr4 122907698 122907901 -61380761 + L1PBa LINE L1 1268 1430 -5419 489 405 54 42 chr4 122907901 122908380 -61380282 + L1PBa LINE L1 15 499 -6351 830 258 5 9 chr4 122908380 122908593 -61380069 + L1PBa LINE L1 1415 1626 -5224 * 4386 200 59 42 chr4 122908568 122911094 -61377568 + L1PB3 LINE L1 11 2634 -3569 2221 120 6 22 chr4 122911098 122911457 -61377205 + THE1B LTR MaLR 12 364 0 5096 158 8 27 chr4 122911483 122911935 -61376727 + L1PB3 LINE L1 4929 5388 -823 1009 134 73 0 chr4 122911935 122912096 -61376566 + L1PA10 LINE L1 5983 6158 -10 5096 158 8 27 chr4 122912096 122912943 -61375719 + L1PB3 LINE L1 5388 6211 0 355 296 102 56 chr4 122913081 122913385 -61375277 + L3 LINE CR1 1119 1436 -141 863 289 254 18 chr4 122913452 122913951 -61374711 + L2 LINE L2 1421 2037 -1277 * 1071 281 120 0 chr4 122913937 122914346 -61374316 + L2 LINE L2 2855 3312 -1 22 0 0 0 chr4 122915631 122915653 -61373009 + AT_rich Low_complexity Low_complexity 1 22 0 397 300 48 43 chr4 122916054 122916264 -61372398 - MIR SINE MIR -44 218 8 1635 207 24 0 chr4 122918058 122918391 -61370271 - MER58B DNA MER1_type 0 341 1 207 0 0 0 chr4 122918579 122918602 -61370060 + (TC)n Simple_repeat Simple_repeat 2 24 0 253 222 12 49 chr4 122919106 122919187 -61369475 + CT-rich Low_complexity Low_complexity 3 80 0 887 167 23 17 chr4 122919753 122919927 -61368735 - L1MC1 LINE L1 0 6333 6159 1874 159 14 3 chr4 122919930 122920283 -61368379 - L1MC1 LINE L1 -244 6089 5733 235 208 115 83 chr4 122920335 122920431 -61368231 - MIR3 SINE MIR -15 193 95 221 175 0 0 chr4 122920927 122920967 -61367695 + A-rich Low_complexity Low_complexity 3 42 0 2111 184 52 50 chr4 122921074 122921575 -61367087 + MLT1D LTR MaLR 1 502 -3 410 242 96 79 chr4 122921680 122921877 -61366785 - MIR SINE MIR -48 214 17 467 308 141 5 chr4 122922304 122922489 -61366173 - MIR SINE MIR -50 212 3 2222 95 20 0 chr4 122922533 122922827 -61365835 - AluSx SINE Alu -12 300 1 27 49 0 0 chr4 122923112 122923153 -61365509 + AT_rich Low_complexity Low_complexity 1 41 0 12176 187 20 9 chr4 122923162 122926477 -61362185 + L1PA15 LINE L1 2804 6162 -3 215 220 20 0 chr4 122927645 122927695 -61360967 - L2 LINE L2 -2 3311 3261 2005 117 84 3 chr4 122928057 122928391 -61360271 - MER46B DNA MER2_type 0 236 1 206 218 36 18 chr4 122928591 122928646 -61360016 + L2 LINE L2 2301 2356 -958 306 312 87 82 chr4 122928843 122929292 -61359370 + L2 LINE L2 1455 1905 -1409 2142 95 3 3 chr4 122931850 122932145 -61356517 + AluSc SINE Alu 1 295 -14 1232 235 79 9 chr4 122933091 122933431 -61355231 - HAL1 LINE L1 -677 1830 1467 471 257 181 26 chr4 122933440 122933900 -61354762 - HAL1 LINE L1 -1147 1360 786 391 294 187 33 chr4 122935541 122935755 -61352907 - MIR SINE MIR -1 261 15 5927 75 8 2 chr4 122937597 122938389 -61350273 - L1PB1 LINE L1 -1 6150 5355 555 319 26 31 chr4 122938581 122938772 -61349890 + MER91A DNA MER1_type 7 196 0 196 309 18 0 chr4 122939246 122939301 -61349361 - L2 LINE L2 -86 3227 3172 346 344 0 0 chr4 122939505 122939601 -61349061 + MIR SINE MIR 36 131 -77 1608 172 38 24 chr4 122939890 122940181 -61348481 + AluJo SINE Alu 1 295 -17 1216 188 130 26 chr4 122940327 122940635 -61348027 + MER2 DNA MER2_type 2 341 -3 1861 136 116 0 chr4 122940806 122941108 -61347554 - MER1B DNA MER1_type 0 337 1 2477 76 0 0 chr4 122942803 122943107 -61345555 + AluSq SINE Alu 5 308 -5 26 50 0 0 chr4 122943277 122943317 -61345345 + AT_rich Low_complexity Low_complexity 1 40 0 180 0 0 0 chr4 122943699 122943719 -61344943 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 487 165 13 0 chr4 122944354 122944433 -61344229 - Tigger5 DNA MER2_type 0 2323 2244 340 191 29 0 chr4 122944453 122944521 -61344141 + Tigger5 DNA MER2_type 2248 2317 -6 463 205 0 0 chr4 122944523 122944601 -61344061 - Tigger5 DNA MER2_type -2244 79 2 461 86 0 0 chr4 122946030 122946100 -61342562 + Alu SINE Alu 1 70 -248 225 65 0 0 chr4 122946108 122946139 -61342523 + (A)n Simple_repeat Simple_repeat 1 31 0 275 154 0 0 chr4 122946293 122946332 -61342330 + AluJb SINE Alu 1 39 -263 1863 91 109 14 chr4 122946336 122946611 -61342051 - AluSx SINE Alu -11 301 1 1581 187 0 4 chr4 122946611 122946878 -61341784 + AluJb SINE Alu 27 292 -20 211 370 33 0 chr4 122947055 122947147 -61341515 - L2 LINE L2 0 3272 3178 439 174 55 0 chr4 122947147 122947256 -61341406 + L1MB8 LINE L1 6063 6177 -1 2650 219 95 28 chr4 122947324 122948188 -61340474 + L1ME2 LINE L1 4696 5755 -409 1695 181 0 33 chr4 122948188 122948348 -61340314 - AluJb SINE Alu -18 294 147 2282 90 0 7 chr4 122948348 122948649 -61340013 - AluSq SINE Alu -14 299 1 1695 181 0 33 chr4 122948649 122948792 -61339870 - AluJb SINE Alu -165 147 1 2650 219 95 28 chr4 122948792 122949212 -61339450 + L1ME2 LINE L1 5755 6145 -19 210 91 0 0 chr4 122949488 122949521 -61339141 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 275 312 97 26 chr4 122950204 122950358 -61338304 - MIR SINE MIR -3 259 95 286 232 72 0 chr4 122950495 122950564 -61338098 - L2 LINE L2 0 3313 3240 316 164 0 16 chr4 122951179 122951240 -61337422 + MIR SINE MIR 88 147 -61 412 260 87 40 chr4 122952066 122952216 -61336446 + L2 LINE L2 3151 3307 -6 356 366 6 12 chr4 122952548 122952709 -61335953 + L2 LINE L2 2903 3062 -210 213 368 21 11 chr4 122952737 122952832 -61335830 + MIR SINE MIR 7 102 -160 182 224 0 61 chr4 122952863 122952912 -61335750 + L2 LINE L2 3211 3256 -16 1412 153 84 22 chr4 122954120 122954244 -61334418 + AluJb SINE Alu 1 116 -196 261 0 0 0 chr4 122954244 122954273 -61334389 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1412 153 84 22 chr4 122954273 122954422 -61334240 + AluJb SINE Alu 116 291 -21 225 159 0 0 chr4 122954611 122954655 -61334007 + (CA)n Simple_repeat Simple_repeat 2 45 0 286 294 0 15 chr4 122955927 122955995 -61332667 - L2 LINE L2 -5 3267 3201 23 54 0 0 chr4 122956529 122956566 -61332096 + AT_rich Low_complexity Low_complexity 1 37 0 1367 171 78 25 chr4 122957820 122958101 -61330561 - AluJb SINE Alu -14 298 3 36329 89 23 7 chr4 122958118 122964148 -61324514 - L1PA6 LINE L1 -20 6134 11 1937 134 37 13 chr4 122964159 122964457 -61324205 - AluSx SINE Alu -7 305 1 775 258 81 10 chr4 122964580 122964778 -61323884 + MER58A DNA MER1_type 2 213 -11 350 245 185 33 chr4 122964794 122964945 -61323717 + MER5B DNA MER1_type 2 175 -3 294 331 69 29 chr4 122964950 122965125 -61323537 - MER5A DNA MER1_type 0 189 8 199 220 0 40 chr4 122965198 122965248 -61323414 + MIR SINE MIR 96 143 -119 23 33 0 0 chr4 122965360 122965390 -61323272 + AT_rich Low_complexity Low_complexity 1 30 0 348 242 13 34 chr4 122966443 122966592 -61322070 - Charlie7 DNA MER1_type 0 2612 2467 811 234 22 16 chr4 122966892 122967076 -61321586 - MIR SINE MIR -56 206 22 272 299 124 22 chr4 122967223 122967360 -61321302 - MIR3 SINE MIR -1 207 57 470 355 10 5 chr4 122967390 122967590 -61321072 - MIR SINE MIR -15 247 47 213 39 0 0 chr4 122968113 122968139 -61320523 + (CA)n Simple_repeat Simple_repeat 2 27 0 276 30 0 0 chr4 122968554 122968587 -61320075 + (TG)n Simple_repeat Simple_repeat 2 34 0 874 322 156 19 chr4 122969002 122969651 -61319011 + L2 LINE L2 1484 2221 -1093 14087 132 23 18 chr4 122969655 122971990 -61316672 + Tigger1 DNA MER2_type 1 2415 -3 369 314 200 16 chr4 122971996 122972241 -61316421 + L2 LINE L2 2227 2516 -798 286 362 10 55 chr4 122972464 122972663 -61315999 + L2 LINE L2 2904 3093 -179 197 311 87 19 chr4 122972727 122972830 -61315832 - MIR SINE MIR -15 247 138 * 254 300 83 33 chr4 122972829 122972949 -61315713 + L2 LINE L2 3182 3307 -6 640 299 18 23 chr4 122973075 122973292 -61315370 + MIR SINE MIR 45 260 -2 319 318 45 8 chr4 122973325 122973457 -61315205 - L1MEc LINE L1 -4820 1576 1440 27756 34 1 6 chr4 122973473 122977651 -61311011 + L1PA4 LINE L1 1990 6155 0 4935 170 10 22 chr4 122977697 122978108 -61310554 + L1MB1 LINE L1 4906 5320 -848 1959 130 168 11 chr4 122978108 122978478 -61310184 + MSTA LTR MaLR 1 428 0 4935 170 10 22 chr4 122978478 122979335 -61309327 + L1MB1 LINE L1 5320 6164 -4 725 156 94 141 chr4 122979875 122979917 -61308745 - MER33 DNA MER1_type -2261 324 282 2255 106 0 10 chr4 122979917 122980220 -61308442 - AluSq SINE Alu -13 300 1 725 156 94 141 chr4 122980220 122980400 -61308262 - MER33 DNA MER1_type -2303 282 121 1895 152 3 26 chr4 122980400 122980702 -61307960 + AluJo SINE Alu 1 295 -17 725 156 94 141 chr4 122980702 122980818 -61307844 - MER33 DNA MER1_type -2464 121 1 1953 136 0 19 chr4 122981225 122981535 -61307127 - AluSg SINE Alu -6 304 1 2262 82 0 10 chr4 122981697 122981991 -61306671 + AluSc SINE Alu 2 292 -17 1687 197 59 92 chr4 122982357 122982930 -61305732 + MLT2B3 LTR ERVL 1 554 0 453 36 0 0 chr4 122983171 122983226 -61305436 + (TATG)n Simple_repeat Simple_repeat 4 58 0 21 0 0 0 chr4 122984786 122984807 -61303855 + AT_rich Low_complexity Low_complexity 1 21 0 1270 206 39 58 chr4 122984899 122985209 -61303453 + AluJo SINE Alu 3 306 -6 327 227 45 34 chr4 122986350 122986438 -61302224 + MIR3 SINE MIR 111 199 -9 1566 156 54 32 chr4 122986836 122987151 -61301511 - Tigger2 DNA MER2_type 0 2718 2397 1464 111 84 4 chr4 122987155 122987416 -61301246 - Tigger2 DNA MER2_type -2436 282 1 447 282 103 14 chr4 122988909 122989122 -61299540 - MIR SINE MIR -28 234 3 3953 136 60 23 chr4 122990989 122991762 -61296900 + L1MA8 LINE L1 5479 6279 -12 640 255 105 59 chr4 122991818 122992104 -61296558 - LTR33 LTR ERVL -70 451 153 1074 147 24 0 chr4 122992108 122992278 -61296384 + FRAM SINE Alu 1 172 -4 1513 199 101 21 chr4 122992438 122992814 -61295848 - MER21B LTR ERV1 -11 852 447 1202 201 112 8 chr4 122992811 122993060 -61295602 - MER21B LTR ERV1 -588 275 1 * 3148 220 19 21 chr4 122993448 122994248 -61294414 - L1M4 LINE L1 -1027 5119 4322 1586 134 27 104 chr4 122994248 122994584 -61294078 + AluJb SINE Alu 1 310 -2 23 33 0 0 chr4 122995822 122995852 -61292810 + AT_rich Low_complexity Low_complexity 1 30 0 204 328 170 35 chr4 122996049 122996137 -61292525 - MIR SINE MIR 0 262 187 1121 197 46 65 chr4 122996137 122996488 -61292174 + MER2 DNA MER2_type 1 344 0 204 328 170 35 chr4 122996488 122996628 -61292034 - MIR SINE MIR -75 187 3 480 268 103 31 chr4 122996852 122997046 -61291616 + MER63A DNA MER1_type 3 210 0 2545 170 88 51 chr4 122997204 122997599 -61291063 + L1MD2 LINE L1 5155 5534 -825 1291 231 93 50 chr4 122997599 122998083 -61290579 + MLT1D LTR MaLR 1 505 0 2545 170 88 51 chr4 122998083 122998288 -61290374 + L1MD2 LINE L1 5534 5730 -629 1359 108 169 27 chr4 122998288 122998548 -61290114 + AluSx SINE Alu 1 297 -5 2545 170 88 51 chr4 122998548 122998559 -61290103 + L1MD2 LINE L1 5730 5739 -620 918 163 6 12 chr4 122998559 122998719 -61289943 + FRAM SINE Alu 1 159 -7 2545 170 88 51 chr4 122998719 122998835 -61289827 + L1MD2 LINE L1 5739 5937 -422 945 171 0 0 chr4 122998851 122998997 -61289665 - FRAM SINE Alu -30 146 1 1029 241 70 58 chr4 122999001 122999415 -61289247 + L1MD2 LINE L1 5928 6346 -13 341 214 179 7 chr4 122999486 122999631 -61289031 + Charlie7 DNA MER1_type 2443 2612 0 1843 166 0 14 chr4 122999941 123000237 -61288425 - AluJb SINE Alu -20 292 1 2432 88 0 0 chr4 123002104 123002411 -61286251 + AluSg SINE Alu 1 307 -3 21 36 0 0 chr4 123002578 123002606 -61286056 + AT_rich Low_complexity Low_complexity 1 28 0 465 294 26 13 chr4 123002835 123002988 -61285674 + L2 LINE L2 22 176 -3138 2208 116 0 0 chr4 123003591 123003885 -61284777 - AluSg SINE Alu -16 294 1 2137 99 3 3 chr4 123004077 123004386 -61284276 - AluSg SINE Alu 0 309 1 23 0 0 0 chr4 123004585 123004608 -61284054 + AT_rich Low_complexity Low_complexity 1 23 0 2167 79 13 36 chr4 123005565 123005868 -61282794 + AluY SINE Alu 1 296 -15 205 189 0 0 chr4 123006853 123006890 -61281772 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 947 161 62 36 chr4 123007433 123007657 -61281005 - MER30 DNA MER1_type 0 230 1 797 245 5 16 chr4 123009235 123009427 -61279235 + MER3 DNA MER1_type 19 208 -1 397 257 45 66 chr4 123009496 123009556 -61279106 + L1M4 LINE L1 5005 5065 -1081 2098 138 0 0 chr4 123009556 123009853 -61278809 + AluSx SINE Alu 9 305 -7 397 257 45 66 chr4 123009853 123010127 -61278535 + L1M4 LINE L1 5065 5332 -814 212 213 13 40 chr4 123010205 123010280 -61278382 + GA-rich Low_complexity Low_complexity 2 74 0 1823 131 62 3 chr4 123011774 123012064 -61276598 + AluJb SINE Alu 1 307 -5 242 211 77 0 chr4 123012662 123012714 -61275948 - MER20 DNA MER1_type 0 219 164 27 62 0 0 chr4 123013674 123013722 -61274940 + AT_rich Low_complexity Low_complexity 1 48 0 2029 142 0 7 chr4 123013861 123014157 -61274505 - AluJb SINE Alu -15 297 4 605 81 0 0 chr4 123015959 123016045 -61272617 - AluSg/x SINE Alu -6 303 218 324 306 88 36 chr4 123016281 123016474 -61272188 + MIR SINE MIR 6 208 -54 203 243 206 9 chr4 123016583 123016690 -61271972 + MIR SINE MIR 135 262 0 2835 7 0 0 chr4 123017038 123017345 -61271317 + AluYa5 SINE Alu 1 307 -4 1712 179 30 0 chr4 123017778 123017898 -61270764 + AluJb SINE Alu 1 116 -196 372 43 0 0 chr4 123017898 123017944 -61270718 + (TGAA)n Simple_repeat Simple_repeat 4 49 0 1712 179 30 0 chr4 123017944 123018125 -61270537 + AluJb SINE Alu 116 311 -1 496 264 130 54 chr4 123018515 123018742 -61269920 - MIR SINE MIR 0 262 15 376 258 119 19 chr4 123018742 123018901 -61269761 - MER5B DNA MER1_type -3 175 1 496 264 130 54 chr4 123018901 123018912 -61269750 - MIR SINE MIR -247 15 6 248 204 56 0 chr4 123019364 123019418 -61269244 - L2 LINE L2 -6 3266 3210 248 325 38 64 chr4 123019755 123019912 -61268750 - MIR SINE MIR -86 176 24 203 270 32 0 chr4 123020116 123020179 -61268483 - MIR SINE MIR -112 96 32 31 0 0 0 chr4 123020227 123020258 -61268404 + AT_rich Low_complexity Low_complexity 1 31 0 1501 184 39 14 chr4 123020261 123020544 -61268118 - AluJo SINE Alu -22 290 1 2587 59 0 0 chr4 123020590 123020896 -61267766 + AluY SINE Alu 1 306 -5 500 173 0 3 chr4 123020933 123021021 -61267641 + MER58 DNA MER1_type 256 2420 0 21 0 0 0 chr4 123021098 123021119 -61267543 + AT_rich Low_complexity Low_complexity 1 21 0 1975 149 0 3 chr4 123021630 123021938 -61266724 - AluSx SINE Alu -5 307 1 1427 183 47 25 chr4 123022212 123022331 -61266331 + AluSx SINE Alu 1 116 -196 200 33 0 33 chr4 123022331 123022361 -61266301 + (TAAAA)n Simple_repeat Simple_repeat 1 29 0 1427 183 47 25 chr4 123022361 123022515 -61266147 + AluSx SINE Alu 116 280 -32 342 0 0 0 chr4 123022534 123022572 -61266090 + (TAAG)n Simple_repeat Simple_repeat 1 38 0 1062 154 22 0 chr4 123023570 123023752 -61264910 + L1PB4 LINE L1 5958 6143 -13 2252 70 0 64 chr4 123024375 123024688 -61263974 + AluSc SINE Alu 7 299 -10 22 0 0 0 chr4 123025375 123025397 -61263265 + AT_rich Low_complexity Low_complexity 1 22 0 2490 207 53 14 chr4 123025485 123026051 -61262611 + MER90 LTR ERV1 24 611 -3 731 334 55 26 chr4 123026063 123026573 -61262089 - L1ME LINE L1 -345 5817 5296 323 320 66 48 chr4 123026574 123026802 -61261860 - L1ME LINE L1 -855 5291 5060 1278 166 43 8 chr4 123026802 123027037 -61261625 + AluJb SINE Alu 44 286 -26 31 0 0 0 chr4 123027037 123027068 -61261594 + AT_rich Low_complexity Low_complexity 1 31 0 358 312 109 0 chr4 123027068 123027329 -61261333 - L1ME LINE L1 -1073 5073 4762 252 349 12 0 chr4 123027480 123027652 -61261010 - L1ME LINE L1 -1576 4570 4397 416 270 101 114 chr4 123027986 123028243 -61260419 - L1ME LINE L1 -2113 4033 3774 2299 101 0 0 chr4 123028243 123028550 -61260112 + AluSg SINE Alu 1 307 -3 416 270 101 114 chr4 123028550 123028895 -61259767 - L1ME LINE L1 -2372 3774 3439 223 237 274 30 chr4 123030168 123030303 -61258359 - L2 LINE L2 -22 3291 3124 752 261 36 5 chr4 123030636 123030831 -61257831 - MIR SINE MIR -25 237 37 466 263 84 50 chr4 123030854 123031033 -61257629 - MIR SINE MIR 0 262 78 1943 117 50 10 chr4 123032108 123032408 -61256254 + AluSx SINE Alu 1 312 0 24 0 0 0 chr4 123033428 123033452 -61255210 + AT_rich Low_complexity Low_complexity 1 24 0 2398 74 0 0 chr4 123034243 123034554 -61254108 + AluY SINE Alu 1 311 0 340 138 28 18 chr4 123034613 123034722 -61253940 + (TA)n Simple_repeat Simple_repeat 1 110 0 597 241 206 5 chr4 123034776 123034975 -61253687 - MIR SINE MIR -19 243 5 2520 114 75 15 chr4 123035401 123035803 -61252859 - MLT2A1 LTR ERVL -18 426 1 25 0 0 0 chr4 123036299 123036324 -61252338 + AT_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chr4 123036430 123036463 -61252199 + AT_rich Low_complexity Low_complexity 1 33 0 940 232 11 26 chr4 123036483 123036755 -61251907 - L1MB8 LINE L1 -1 6177 5910 1560 84 0 33 chr4 123037305 123037520 -61251142 + AluSg/x SINE Alu 87 294 -18 362 310 53 73 chr4 123038332 123038432 -61250230 - MIR SINE MIR -17 245 144 2231 91 0 26 chr4 123038432 123038740 -61249922 - AluSg SINE Alu -10 300 1 362 310 53 73 chr4 123038740 123038884 -61249778 - MIR SINE MIR -118 144 6 588 331 62 8 chr4 123038931 123039173 -61249489 - MIR SINE MIR -2 260 6 317 338 126 15 chr4 123039564 123039762 -61248900 - L3 LINE CR1 -254 1323 1104 381 259 98 85 chr4 123039765 123039989 -61248673 - L3 LINE CR1 -260 1317 1091 336 376 40 0 chr4 123040696 123040821 -61247841 - L2 LINE L2 0 3272 3143 1959 142 13 13 chr4 123040847 123041165 -61247497 + MER44D DNA MER2_type 21 608 -1 22 0 0 0 chr4 123041626 123041648 -61247014 + AT_rich Low_complexity Low_complexity 1 22 0 234 0 0 0 chr4 123041851 123041877 -61246785 + (CAA)n Simple_repeat Simple_repeat 2 27 0 434 173 25 0 chr4 123042400 123042481 -61246181 + HsTC2 DNA Tc2 1798 1880 -18 213 352 45 0 chr4 123042857 123042945 -61245717 + MIR3 SINE MIR 110 201 -7 361 118 0 0 chr4 123044229 123044280 -61244382 + 5S rRNA rRNA 1 51 -70 2239 101 0 26 chr4 123044572 123044879 -61243783 + AluSx SINE Alu 1 299 -13 219 69 0 0 chr4 123045105 123045134 -61243528 + (T)n Simple_repeat Simple_repeat 1 29 0 1001 167 52 0 chr4 123045914 123046088 -61242574 + MSTB LTR MaLR 244 426 0 1295 194 98 22 chr4 123046184 123046499 -61242163 + MER2 DNA MER2_type 7 345 0 1626 193 30 0 chr4 123046625 123046926 -61241736 + AluJo SINE Alu 3 312 0 263 228 0 18 chr4 123046989 123047046 -61241616 + GA-rich Low_complexity Low_complexity 4 59 0 336 289 89 63 chr4 123047192 123047382 -61241280 - MIR SINE MIR -11 251 57 696 253 16 113 chr4 123047851 123048301 -61240361 - L1MEc LINE L1 -4630 1766 1361 325 256 116 107 chr4 123048442 123048467 -61240195 + MLT1H LTR MaLR 1 24 -525 540 90 0 0 chr4 123048467 123048545 -61240117 + L1PA11 LINE L1 6096 6173 -1 325 256 116 107 chr4 123048545 123048826 -61239836 + MLT1H LTR MaLR 24 343 -206 266 231 99 33 chr4 123048985 123049076 -61239586 + MIR SINE MIR 165 261 -1 3026 134 26 0 chr4 123049153 123049691 -61238971 - L1MC/D LINE L1 -594 5739 5188 10756 91 8 9 chr4 123049694 123052038 -61236624 - L1PA7 LINE L1 -8 6146 3826 928 139 7 7 chr4 123052040 123052184 -61236478 + AluSg/x SINE Alu 149 292 -20 2464 70 0 0 chr4 123052915 123053213 -61235449 + AluSx SINE Alu 2 299 -13 1373 236 158 38 chr4 123053784 123054449 -61234213 - Charlie2 DNA MER1_type -106 2756 2012 309 250 145 57 chr4 123054660 123054784 -61233878 - Charlie2 DNA MER1_type -2674 188 54 388 234 189 11 chr4 123055754 123055929 -61232733 - HAL1 LINE L1 -821 1686 1481 228 164 3 0 chr4 123056223 123056267 -61232395 + MIR SINE MIR 107 145 -63 246 333 72 22 chr4 123056347 123056485 -61232177 + MIR SINE MIR 17 161 -101 33 0 0 0 chr4 123056813 123056846 -61231816 + AT_rich Low_complexity Low_complexity 1 33 0 1261 154 8 49 chr4 123058437 123058683 -61229979 - MER46A DNA MER2_type 0 236 1 24 0 0 0 chr4 123059155 123059179 -61229483 + AT_rich Low_complexity Low_complexity 1 24 0 211 219 0 0 chr4 123059311 123059352 -61229310 + (CATA)n Simple_repeat Simple_repeat 3 43 0 676 213 0 46 chr4 123059727 123059901 -61228761 + L1 LINE L1 5192 5357 -789 1037 147 21 11 chr4 123059912 123060103 -61228559 - MER47B DNA MER2_type -8 410 218 1183 103 5 16 chr4 123060110 123060294 -61228368 - AluSg/x SINE Alu 0 309 128 528 357 103 11 chr4 123060583 123060855 -61227807 - L3 LINE CR1 -488 1089 793 21 0 0 0 chr4 123061087 123061108 -61227554 + AT_rich Low_complexity Low_complexity 1 21 0 197 366 155 0 chr4 123061230 123061391 -61227271 - L3 LINE CR1 -598 979 794 23 68 0 0 chr4 123063405 123063449 -61225213 + AT_rich Low_complexity Low_complexity 1 44 0 451 262 74 0 chr4 123063814 123063936 -61224726 + MIR SINE MIR 7 137 -125 1000 240 103 65 chr4 123064187 123064902 -61223760 + L1MEc LINE L1 1974 2660 -3555 1737 157 59 19 chr4 123064902 123065226 -61223436 + MER1B DNA MER1_type 1 337 0 1000 240 103 65 chr4 123065226 123065270 -61223392 + L1MEc LINE L1 2660 2701 -3514 2267 103 0 28 chr4 123065270 123065454 -61223208 - AluSp SINE Alu -2 311 138 2202 73 3 27 chr4 123065454 123065754 -61222908 - AluY SINE Alu -18 293 1 2267 103 0 28 chr4 123065754 123065889 -61222773 - AluSp SINE Alu -175 138 1 1000 240 103 65 chr4 123065889 123066095 -61222567 + L1MEc LINE L1 2701 2934 -3281 968 136 80 24 chr4 123066093 123066306 -61222356 - L1 LINE L1 -1695 4451 4227 * 1980 156 30 0 chr4 123066306 123066640 -61222022 + MER2 DNA MER2_type 2 345 0 4693 173 19 10 chr4 123066640 123067533 -61221129 - L1 LINE L1 -1917 4229 3329 3177 175 58 45 chr4 123067523 123068543 -61220119 + L1M2 LINE L1 4614 5645 -646 * 433 256 63 123 chr4 123068543 123068635 -61220027 + MER65A LTR ERV1 1 97 -348 240 35 0 0 chr4 123068635 123068664 -61219998 + (CA)n Simple_repeat Simple_repeat 1 29 0 433 256 63 123 chr4 123068664 123069044 -61219618 + MER65A LTR ERV1 97 445 0 2524 47 0 0 chr4 123069068 123069367 -61219295 + AluY SINE Alu 1 299 -12 732 110 25 17 chr4 123069397 123069515 -61219147 + L1MA9 LINE L1 5675 5793 -519 285 98 0 0 chr4 123069520 123069561 -61219101 + (TA)n Simple_repeat Simple_repeat 2 42 0 398 178 27 0 chr4 123069562 123069635 -61219027 - L1M2 LINE L1 -526 5786 5712 1541 159 42 31 chr4 123069657 123070053 -61218609 + L1MA9 LINE L1 5783 6307 -5 3336 156 60 69 chr4 123070058 123070870 -61217792 + L1MB2 LINE L1 5366 6170 -1 2267 248 86 36 chr4 123070931 123071863 -61216799 + L1ME1 LINE L1 5137 6111 -55 1631 190 3 26 chr4 123071865 123072175 -61216487 + AluJo SINE Alu 3 305 -7 397 231 146 8 chr4 123072185 123072315 -61216347 + MIR SINE MIR 71 218 -44 331 353 63 0 chr4 123072434 123072641 -61216021 - L2 LINE L2 -1141 2173 1954 531 296 49 49 chr4 123072661 123072887 -61215775 + MLT1J LTR MaLR 44 269 -242 22 0 0 0 chr4 123073601 123073623 -61215039 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr4 123074589 123074630 -61214032 + AT_rich Low_complexity Low_complexity 1 41 0 1268 186 82 25 chr4 123074963 123075243 -61213419 - AluJb SINE Alu -16 296 1 2677 103 3 13 chr4 123075324 123075703 -61212959 - THE1C LTR MaLR 0 375 1 200 304 161 25 chr4 123076489 123076650 -61212012 - L2 LINE L2 -1260 2054 1872 6137 43 3 17 chr4 123077533 123078207 -61210455 - L1PA5 LINE L1 0 6154 5491 2064 113 6 22 chr4 123078207 123078518 -61210144 - AluY SINE Alu -5 306 1 6137 43 3 17 chr4 123078518 123078612 -61210050 - L1PA5 LINE L1 -663 5491 5397 2200 152 6 0 chr4 123079584 123079945 -61208717 + MER47A DNA MER2_type 4 366 0 6600 125 48 38 chr4 123080401 123081620 -61207042 - Tigger3b DNA MER2_type 0 1231 1 1969 109 101 23 chr4 123082083 123082431 -61206231 + THE1C LTR MaLR 1 375 0 247 325 25 0 chr4 123082883 123082963 -61205699 - L2 LINE L2 -5 3267 3186 24 32 0 0 chr4 123083029 123083060 -61205602 + AT_rich Low_complexity Low_complexity 1 31 0 993 287 72 14 chr4 123083411 123083829 -61204833 + L1MC4a LINE L1 5518 5959 -1849 353 114 67 0 chr4 123083829 123083934 -61204728 + (TA)n Simple_repeat Simple_repeat 2 113 0 26 0 0 0 chr4 123084329 123084355 -61204307 + AT_rich Low_complexity Low_complexity 1 26 0 184 284 49 37 chr4 123085109 123085190 -61203472 - MIR SINE MIR -117 145 64 728 170 85 46 chr4 123085617 123085770 -61202892 - MER20 DNA MER1_type 0 219 61 1503 173 4 0 chr4 123086036 123086290 -61202372 + AluJo SINE Alu 34 288 -24 3093 147 42 172 chr4 123087392 123088519 -61200143 + MER52C LTR ERV1 16 1278 0 1937 118 52 0 chr4 123090183 123090455 -61198207 + AluSx SINE Alu 1 286 -26 237 33 0 0 chr4 123090468 123090498 -61198164 + (GAA)n Simple_repeat Simple_repeat 2 31 0 498 326 37 16 chr4 123091311 123091553 -61197109 + MIR SINE MIR 16 262 0 687 200 47 0 chr4 123092742 123092892 -61195770 - MER58A DNA MER1_type -23 201 45 6063 173 151 37 chr4 123094032 123095504 -61193158 + MER52A LTR ERV1 1 1749 -6 1957 219 97 22 chr4 123095689 123095774 -61192888 - L1ME1 LINE L1 0 6166 6089 14030 141 28 11 chr4 123095774 123098151 -61190511 - Tigger1 DNA MER2_type 0 2418 1 1957 219 97 22 chr4 123098151 123098609 -61190053 - L1ME1 LINE L1 -77 6089 5582 378 0 0 0 chr4 123099368 123099410 -61189252 + (CA)n Simple_repeat Simple_repeat 1 42 0 243 0 0 0 chr4 123099694 123099721 -61188941 + (CA)n Simple_repeat Simple_repeat 2 28 0 186 43 0 0 chr4 123100201 123100224 -61188438 + (T)n Simple_repeat Simple_repeat 1 23 0 325 353 64 5 chr4 123100445 123100632 -61188030 - MIR3 SINE MIR -3 205 8 256 272 62 0 chr4 123101459 123101540 -61187122 + L3 LINE CR1 734 819 -758 742 346 60 65 chr4 123101726 123102448 -61186214 + L3 LINE CR1 845 1562 -15 6061 130 37 10 chr4 123103001 123104281 -61184381 + L1MA8 LINE L1 4985 6285 -6 1260 252 40 3 chr4 123104375 123104704 -61183958 - MER58B DNA MER1_type 0 341 1 674 233 55 6 chr4 123105386 123105549 -61183113 + FAM SINE Alu 1 171 -4 22 35 0 0 chr4 123107265 123107294 -61181368 + AT_rich Low_complexity Low_complexity 1 29 0 267 152 0 0 chr4 123107420 123107466 -61181196 + (TA)n Simple_repeat Simple_repeat 2 47 0 2774 178 45 45 chr4 123107483 123108118 -61180544 + MER66A-int LTR ERV1 1884 4441 -2235 511 231 9 22 chr4 123108118 123108241 -61180421 + MER4D LTR ERV1 35 160 -580 1838 129 45 92 chr4 123108242 123108645 -61180017 + MER66A-int LTR ERV1 4558 4941 -1735 1827 134 36 0 chr4 123108634 123108911 -61179751 + MER66A-int LTR ERV1 6390 6676 0 * 1335 203 132 33 chr4 123108990 123109429 -61179233 + MER66A LTR ERV1 97 478 0 2199 243 54 12 chr4 123109429 123109988 -61178674 + MLT1E3 LTR MaLR 43 624 0 2595 178 24 13 chr4 123111229 123111696 -61176966 + MER70A LTR ERVL 1 472 0 1956 136 17 10 chr4 123112639 123112940 -61175722 + AluSx SINE Alu 1 303 -9 1736 148 133 18 chr4 123113610 123113994 -61174668 - MSTA LTR MaLR 0 428 1 271 331 87 27 chr4 123114398 123114582 -61174080 - L2 LINE L2 -466 2848 2654 6393 201 81 70 chr4 123114588 123117739 -61170923 + L1MC1 LINE L1 23 3211 -3215 1529 195 0 7 chr4 123117741 123118018 -61170644 + AluJb SINE Alu 1 275 -37 201 39 0 0 chr4 123118018 123118044 -61170618 + (TCTCTG)n Simple_repeat Simple_repeat 2 27 0 309 224 47 24 chr4 123118045 123118130 -61170532 - L1MC4 LINE L1 -1342 6700 6614 5491 242 29 63 chr4 123118185 123118987 -61169675 + L1MC1 LINE L1 3228 4056 -2557 761 141 8 16 chr4 123118987 123119115 -61169547 + FRAM SINE Alu 47 173 -3 5491 242 29 63 chr4 123119115 123121754 -61166908 + L1MC1 LINE L1 4056 6613 0 214 339 76 34 chr4 123121959 123122195 -61166467 - L2 LINE L2 -992 2322 2077 1335 223 5 65 chr4 123122207 123122574 -61166088 - MLT1A2 LTR MaLR -5 369 25 230 266 110 58 chr4 123122577 123122637 -61166025 - L2 LINE L2 -1253 2061 2006 2258 112 0 3 chr4 123122637 123122949 -61165713 + AluY SINE Alu 1 311 0 230 266 110 58 chr4 123122949 123123042 -61165620 - L2 LINE L2 -1308 2006 1900 196 281 88 61 chr4 123123507 123123621 -61165041 - L2 LINE L2 0 3313 3197 415 98 33 0 chr4 123124724 123124785 -61163877 + LTR40a LTR ERVL 5 67 -452 472 129 54 11 chr4 123124785 123124878 -61163784 + L1MB7 LINE L1 6041 6137 -47 1563 225 18 20 chr4 123124889 123125284 -61163378 + LTR40a LTR ERVL 125 518 -1 2426 82 0 22 chr4 123125340 123125658 -61163004 + AluY SINE Alu 1 311 0 1741 171 0 0 chr4 123126191 123126465 -61162197 + AluSx SINE Alu 24 297 -15 1500 136 0 133 chr4 123127135 123127451 -61161211 + AluJo SINE Alu 29 302 -10 362 97 48 0 chr4 123127454 123127516 -61161146 + G-rich Low_complexity Low_complexity 5 69 0 189 0 0 0 chr4 123127689 123127710 -61160952 + (A)n Simple_repeat Simple_repeat 1 21 0 279 0 0 0 chr4 123127964 123127995 -61160667 + (A)n Simple_repeat Simple_repeat 1 31 0 2286 85 24 0 chr4 123128348 123128641 -61160021 - AluSp SINE Alu -13 300 1 21 0 0 0 chr4 123128707 123128728 -61159934 + AT_rich Low_complexity Low_complexity 1 21 0 263 283 41 41 chr4 123129150 123129295 -61159367 + MLT1K LTR MaLR 190 334 -254 298 351 30 2 chr4 123129514 123129652 -61159010 - MIR SINE MIR -61 147 15 3800 149 38 37 chr4 123129677 123130441 -61158221 - L1MB3 LINE L1 -2 6181 5417 35 0 0 0 chr4 123130626 123130661 -61158001 + AT_rich Low_complexity Low_complexity 1 35 0 2232 91 0 0 chr4 123130661 123130946 -61157716 - AluY SINE Alu -26 285 1 279 0 0 0 chr4 123131770 123131801 -61156861 + (A)n Simple_repeat Simple_repeat 1 31 0 1943 148 38 0 chr4 123133406 123133697 -61154965 + AluJb SINE Alu 1 302 -10 871 73 40 16 chr4 123133700 123133824 -61154838 + AluSg/x SINE Alu 179 305 -5 27 0 0 0 chr4 123134066 123134093 -61154569 + AT_rich Low_complexity Low_complexity 1 27 0 2193 91 37 13 chr4 123134561 123134859 -61153803 + AluSq SINE Alu 1 305 -8 189 0 0 0 chr4 123135228 123135249 -61153413 + (T)n Simple_repeat Simple_repeat 1 21 0 362 97 48 0 chr4 123135422 123135484 -61153178 + C-rich Low_complexity Low_complexity 5 69 0 1037 197 15 15 chr4 123135487 123135685 -61152977 - AluJ SINE Alu -10 302 105 659 155 0 10 chr4 123135700 123135803 -61152859 - AluJ SINE Alu -182 130 29 1487 140 5 0 chr4 123136040 123136254 -61152408 + AluSx SINE Alu 5 219 -93 25 0 0 0 chr4 123136270 123136295 -61152367 + AT_rich Low_complexity Low_complexity 1 25 0 310 333 19 43 chr4 123137358 123137520 -61151142 + L2 LINE L2 3156 3313 0 243 0 0 0 chr4 123137664 123137691 -61150971 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1627 179 18 7 chr4 123137693 123137972 -61150690 - AluJo SINE Alu -30 282 1 1606 174 37 7 chr4 123138920 123139190 -61149472 + AluJb SINE Alu 13 290 -22 247 303 141 20 chr4 123139192 123139291 -61149371 - L2 LINE L2 -1 3312 3202 21 71 0 0 chr4 123139699 123139741 -61148921 + AT_rich Low_complexity Low_complexity 1 42 0 636 318 81 35 chr4 123141428 123141834 -61146828 + MER115 DNA AcHobo 1 425 -268 264 345 0 0 chr4 123141889 123141973 -61146689 + MIR SINE MIR 159 242 -20 1632 176 55 3 chr4 123142642 123142932 -61145730 + AluJb SINE Alu 3 307 -5 312 241 12 0 chr4 123142975 123143058 -61145604 - HsTC2 DNA Tc2 -1812 86 3 2170 125 0 0 chr4 123143323 123143620 -61145042 - AluSx SINE Alu -15 297 1 305 196 0 28 chr4 123144057 123144118 -61144544 + (TAA)n Simple_repeat Simple_repeat 3 64 -42 2031 122 7 3 chr4 123144118 123144404 -61144258 + AluSx SINE Alu 1 287 -25 305 196 0 28 chr4 123144404 123144428 -61144234 + (TAA)n Simple_repeat Simple_repeat 64 87 -19 2254 95 0 3 chr4 123144428 123144722 -61143940 + AluY SINE Alu 1 293 -18 305 196 0 28 chr4 123144722 123144742 -61143920 + (TAA)n Simple_repeat Simple_repeat 87 106 0 29 28 0 0 chr4 123144886 123144922 -61143740 + AT_rich Low_complexity Low_complexity 1 36 0 369 301 7 13 chr4 123144942 123145095 -61143567 + L1ME LINE L1 4507 4658 -1488 21 0 0 0 chr4 123145273 123145294 -61143368 + AT_rich Low_complexity Low_complexity 1 21 0 2283 108 0 3 chr4 123145304 123145609 -61143053 + AluSq SINE Alu 3 306 -7 24 32 0 0 chr4 123145692 123145723 -61142939 + AT_rich Low_complexity Low_complexity 1 31 0 1656 192 3 22 chr4 123145767 123146080 -61142582 - AluJo SINE Alu -4 308 2 230 256 145 17 chr4 123146423 123146540 -61142122 + L1ME LINE L1 5540 5671 -450 246 200 0 0 chr4 123146696 123146756 -61141906 + L1ME4a LINE L1 6062 6121 0 2173 121 0 0 chr4 123146786 123147076 -61141586 + AluSx SINE Alu 1 290 -22 292 224 47 47 chr4 123147689 123147774 -61140888 + Tigger3(Golem) DNA MER2_type 1 85 -2944 * 5628 92 35 5 chr4 123147763 123148622 -61140040 + Tigger3(Golem) DNA MER2_type 1856 2740 -289 1217 160 94 84 chr4 123148624 123148911 -61139751 - AluJb SINE Alu -12 300 11 2387 78 3 16 chr4 123148934 123149243 -61139419 - AluSc SINE Alu -4 305 1 1164 180 81 11 chr4 123149279 123149540 -61139122 + Tigger3(Golem) DNA MER2_type 2749 3027 -2 1789 173 0 20 chr4 123150487 123150793 -61137869 - AluJb SINE Alu -12 300 1 258 32 0 0 chr4 123151196 123151227 -61137435 + (TG)n Simple_repeat Simple_repeat 1 31 0 368 316 161 59 chr4 123152791 123153710 -61134952 - L2 LINE L2 -557 2757 1745 1718 143 7 50 chr4 123154009 123154310 -61134352 - AluJb SINE Alu -24 288 1 248 355 81 32 chr4 123154609 123154795 -61133867 + L2 LINE L2 3074 3268 -4 328 290 65 16 chr4 123155007 123155131 -61133531 - MIR SINE MIR -16 246 117 276 30 0 0 chr4 123155698 123155731 -61132931 + (TAA)n Simple_repeat Simple_repeat 1 33 0 798 263 29 45 chr4 123155896 123156139 -61132523 - MIR SINE MIR -21 241 3 21 0 0 0 chr4 123156884 123156905 -61131757 + AT_rich Low_complexity Low_complexity 1 21 0 1923 149 3 32 chr4 123157165 123157481 -61131181 + AluJb SINE Alu 2 308 -4 21 0 0 0 chr4 123158617 123158638 -61130024 + AT_rich Low_complexity Low_complexity 1 21 0 1809 192 88 57 chr4 123158758 123158917 -61129745 + L1MC4 LINE L1 7421 7574 -468 1883 180 3 3 chr4 123158917 123159212 -61129450 + AluJo SINE Alu 1 295 -17 1809 192 88 57 chr4 123159212 123159652 -61129010 + L1MC4 LINE L1 7574 8039 -3 2218 89 3 3 chr4 123160049 123160340 -61128322 - AluSq SINE Alu -22 291 1 455 257 171 7 chr4 123160910 123161062 -61127600 + MER5A DNA MER1_type 11 187 -2 990 261 110 7 chr4 123161386 123161830 -61126832 - L1M4 LINE L1 -3342 2804 2315 465 317 64 0 chr4 123162284 123162487 -61126175 - MIR SINE MIR -24 238 16 1443 138 27 0 chr4 123163058 123163282 -61125380 + MER30 DNA MER1_type 1 230 0 380 302 0 0 chr4 123163399 123163528 -61125134 - L1ME3A LINE L1 -302 5868 5740 2350 136 21 5 chr4 123163752 123164135 -61124527 - MLT1B LTR MaLR 0 390 2 2361 136 70 0 chr4 123164339 123164737 -61123925 + MSTB LTR MaLR 1 426 0 25 0 0 0 chr4 123164744 123164769 -61123893 + AT_rich Low_complexity Low_complexity 1 25 0 496 316 19 13 chr4 123164784 123164939 -61123723 - MIR SINE MIR -96 166 11 203 268 0 0 chr4 123164969 123165010 -61123652 + (CATG)n Simple_repeat Simple_repeat 3 43 0 309 303 34 0 chr4 123165384 123165503 -61123159 + MIR SINE MIR 140 262 0 241 94 0 0 chr4 123166778 123166810 -61121852 - U2 snRNA snRNA -155 33 2 316 248 40 74 chr4 123167306 123167455 -61121207 - MIR SINE MIR -55 207 64 1890 170 3 10 chr4 123167519 123167694 -61120968 - AluJb SINE Alu -3 309 134 307 56 37 0 chr4 123167694 123167748 -61120914 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 2221 98 0 3 chr4 123167748 123168034 -61120628 - AluSq SINE Alu -28 285 1 1890 170 3 10 chr4 123168034 123168168 -61120494 - AluJb SINE Alu -176 136 1 274 235 147 0 chr4 123168184 123168286 -61120376 - MIR SINE MIR -29 233 117 2345 100 0 0 chr4 123168819 123169110 -61119552 + AluSx SINE Alu 1 291 -21 1979 140 20 3 chr4 123169662 123169954 -61118708 + AluSx SINE Alu 1 297 -15 264 264 28 0 chr4 123170105 123170177 -61118485 - LTR33A LTR ERVL -6 517 444 180 77 0 0 chr4 123170643 123170669 -61117993 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 2422 68 0 0 chr4 123170918 123171212 -61117450 - AluSg SINE Alu -16 294 1 2392 62 0 46 chr4 123171227 123171550 -61117112 - AluY SINE Alu -3 308 1 226 302 0 0 chr4 123172023 123172076 -61116586 + L2 LINE L2 3005 3057 -256 2119 112 0 3 chr4 123172512 123172819 -61115843 + AluSx SINE Alu 1 306 0 675 125 0 19 chr4 123174343 123174447 -61114215 + FLAM_C SINE Alu 2 103 -40 25 0 0 0 chr4 123174599 123174624 -61114038 + AT_rich Low_complexity Low_complexity 1 25 0 260 309 42 99 chr4 123175014 123175467 -61113195 - MLT1K LTR MaLR -149 439 13 811 244 67 13 chr4 123175560 123175785 -61112877 + L1M2a LINE L1 6 242 -6926 * 1105 212 39 16 chr4 123175775 123176030 -61112632 + L1M2a LINE L1 1538 1798 -5370 26 0 0 0 chr4 123176049 123176075 -61112587 + AT_rich Low_complexity Low_complexity 1 26 0 228 231 39 48 chr4 123176075 123176179 -61112483 + L1M2a LINE L1 4046 4148 -3019 * 833 255 73 6 chr4 123176153 123176510 -61112152 + L1M2a LINE L1 4036 4416 -2751 2101 92 4 4 chr4 123176613 123176885 -61111777 - AluY SINE Alu -39 272 1 1144 160 5 16 chr4 123176922 123177116 -61111546 + AluJo SINE Alu 120 311 -1 498 278 127 91 chr4 123177342 123177459 -61111203 - L1MEc LINE L1 -1438 4691 4580 2290 97 0 0 chr4 123177459 123177748 -61110914 - AluSc SINE Alu -20 289 1 498 278 127 91 chr4 123177748 123177841 -61110821 - L1MEc LINE L1 -1549 4580 4492 279 0 0 0 chr4 123177841 123177872 -61110790 + (CA)n Simple_repeat Simple_repeat 2 32 0 498 278 127 91 chr4 123177872 123178174 -61110488 - L1MEc LINE L1 -1637 4492 4160 414 242 105 46 chr4 123178223 123178513 -61110149 + MLT1I LTR MaLR 73 428 -22 778 260 85 77 chr4 123178530 123178759 -61109903 - L1MEc LINE L1 -1988 4141 3915 1624 171 68 31 chr4 123178759 123179052 -61109610 - AluJb SINE Alu -7 305 2 778 260 85 77 chr4 123179052 123179107 -61109555 - L1MEc LINE L1 -2214 3915 3862 2280 53 3 86 chr4 123179107 123179446 -61109216 - AluY SINE Alu 0 311 1 2312 72 3 3 chr4 123179447 123179740 -61108922 - AluY SINE Alu -18 293 1 778 260 85 77 chr4 123179740 123180320 -61108342 - L1MEc LINE L1 -2266 3863 3267 276 221 52 58 chr4 123180314 123180468 -61108194 - L1MEc LINE L1 -3118 3011 2859 * 1014 153 13 6 chr4 123180566 123180723 -61107939 - AluJb SINE Alu -68 244 87 538 184 35 21 chr4 123180868 123181009 -61107653 - L1MB8 LINE L1 -2 6176 6034 344 259 0 0 chr4 123181148 123181260 -61107402 - L1MEc LINE L1 -3606 2523 2412 318 299 73 51 chr4 123181330 123181507 -61107155 - L1MEc LINE L1 -3730 2399 2219 390 21 0 0 chr4 123181634 123181681 -61106981 + (CA)n Simple_repeat Simple_repeat 1 47 0 340 345 99 29 chr4 123181728 123182102 -61106560 - L1MEc LINE L1 -4560 1750 1351 331 289 91 15 chr4 123182144 123182341 -61106321 - L1MEc LINE L1 -4886 1233 1022 450 304 96 19 chr4 123182369 123182682 -61105980 - L1MEc LINE L1 -5281 838 502 2283 130 0 0 chr4 123182796 123183104 -61105558 - AluSx SINE Alu -4 308 1 265 311 42 24 chr4 123183533 123183700 -61104962 - L1ME LINE L1 -420 5701 5532 221 342 108 38 chr4 123183780 123183938 -61104724 - L2 LINE L2 -223 3090 2922 493 310 75 11 chr4 123183940 123184127 -61104535 + HERV16 LTR ERVL 1826 2024 -2972 1346 300 57 50 chr4 123184144 123185096 -61103566 + HERV16 LTR ERVL 2741 3425 -1571 642 301 19 0 chr4 123185096 123185302 -61103360 - MER63A DNA MER1_type 0 210 1 1032 247 37 10 chr4 123185562 123185923 -61102739 + LTR16A LTR ERVL 16 450 0 2921 150 7 26 chr4 123186715 123187262 -61101400 - L1MB4 LINE L1 0 6180 5644 216 0 0 0 chr4 123187262 123187286 -61101376 + (CA)n Simple_repeat Simple_repeat 2 25 0 192 152 0 0 chr4 123187297 123187330 -61101332 + (TA)n Simple_repeat Simple_repeat 1 33 0 277 183 34 11 chr4 123187392 123187567 -61101095 + (TA)n Simple_repeat Simple_repeat 1 179 0 431 125 51 75 chr4 123187572 123188009 -61100653 + (TAGA)n Simple_repeat Simple_repeat 1 426 0 1003 274 61 45 chr4 123188031 123188541 -61100121 - ERVL LTR ERVL -1099 4665 4148 2309 126 0 0 chr4 123190376 123190686 -61097976 + AluSx SINE Alu 2 311 -1 259 289 84 92 chr4 123191343 123191485 -61097177 - L3 LINE CR1 -2 1575 1435 231 341 135 0 chr4 123191488 123191614 -61097048 - L3 LINE CR1 -1175 402 260 510 216 61 77 chr4 123192052 123192110 -61096552 - MLT1K LTR MaLR 0 588 531 2383 91 7 3 chr4 123192110 123192419 -61096243 - AluSx SINE Alu -2 310 1 510 216 61 77 chr4 123192419 123192541 -61096121 - MLT1K LTR MaLR -57 531 411 2832 95 22 3 chr4 123192620 123193100 -61095562 - MER1A DNA MER1_type 0 529 1 308 304 45 27 chr4 123193107 123193219 -61095443 - MLT1K LTR MaLR -280 308 195 446 314 82 13 chr4 123193270 123193429 -61095233 + MER91A DNA MER1_type 22 191 -5 300 234 78 70 chr4 123193429 123193557 -61095105 - MLT1K LTR MaLR -443 145 17 213 191 43 0 chr4 123193620 123193667 -61094995 + (CAACT)n Simple_repeat Simple_repeat 1 49 0 198 0 0 0 chr4 123194709 123194731 -61093931 + (A)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr4 123194868 123194890 -61093772 + GC_rich Low_complexity Low_complexity 1 22 0 1994 101 63 3 chr4 123195984 123196270 -61092392 + AluSx SINE Alu 1 303 -9 606 41 0 0 chr4 123197140 123197213 -61091449 - tRNA-Cys-TGC tRNA tRNA -2 73 1 272 265 121 44 chr4 123198008 123198306 -61090356 + L2 LINE L2 1868 2188 -1126 887 286 65 50 chr4 123198316 123198496 -61090166 + L2 LINE L2 2896 3072 -241 686 199 122 0 chr4 123198496 123198652 -61090010 + MER96 DNA MER1_type 1 175 0 887 286 65 50 chr4 123198652 123198870 -61089792 + L2 LINE L2 3072 3300 -13 241 254 106 63 chr4 123198952 123199094 -61089568 + L2 LINE L2 2301 2448 -866 12639 44 0 0 chr4 123199544 123201877 -61086785 - L1PA5 LINE L1 0 6154 3822 11316 44 4 1 chr4 123201877 123203380 -61085282 + L1PA5 LINE L1 2297 3803 -2343 271 286 221 7 chr4 123203473 123203613 -61085049 + L2 LINE L2 3096 3265 -7 930 211 0 0 chr4 123203728 123203894 -61084768 + AluJb SINE Alu 138 303 -9 321 349 113 15 chr4 123204431 123204626 -61084036 - L3b LINE CR1 -116 1467 1254 193 271 68 34 chr4 123205392 123205451 -61083211 - L3b LINE CR1 -48 1535 1475 207 0 0 0 chr4 123205472 123205495 -61083167 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 392 287 0 9 chr4 123205709 123205817 -61082845 + MARNA DNA Mariner 80 186 -400 204 326 21 83 chr4 123205821 123205934 -61082728 + L2 LINE L2 2521 2619 -695 2185 94 0 0 chr4 123205934 123206211 -61082451 - AluSc SINE Alu -15 294 18 204 326 21 83 chr4 123206211 123206290 -61082372 + L2 LINE L2 2619 2701 -613 2517 174 23 1 chr4 123206382 123207208 -61081454 - L1M4 LINE L1 -460 5718 4874 402 119 0 0 chr4 123207355 123207414 -61081248 - L1M4 LINE L1 -1216 4930 4872 223 277 0 0 chr4 123207675 123207722 -61080940 + L2 LINE L2 3119 3165 -107 221 239 0 0 chr4 123207787 123207833 -61080829 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 998 178 6 0 chr4 123209110 123209279 -61079383 + AluJb SINE Alu 130 299 -13 2323 99 7 3 chr4 123209643 123209945 -61078717 + AluSx SINE Alu 1 303 -9 300 244 73 12 chr4 123210199 123210281 -61078381 - MER5A DNA MER1_type -1 188 102 198 321 0 0 chr4 123210334 123210387 -61078275 + L3 LINE CR1 1523 1575 -2 23 33 0 0 chr4 123211984 123212014 -61076648 + AT_rich Low_complexity Low_complexity 1 30 0 2099 117 0 0 chr4 123212326 123212607 -61076055 - AluSx SINE Alu -11 301 21 460 213 19 19 chr4 123212771 123212879 -61075783 + MER81 DNA DNA 7 114 0 342 153 129 47 chr4 123212892 123212977 -61075685 + MLT1H LTR MaLR 432 523 -26 311 192 14 0 chr4 123212979 123213052 -61075610 + CT-rich Low_complexity Low_complexity 3 76 0 786 285 59 23 chr4 123213055 123213170 -61075492 - L1ME4a LINE L1 -206 5915 5806 1966 129 3 29 chr4 123213170 123213479 -61075183 - AluSx SINE Alu -11 301 1 786 285 59 23 chr4 123213479 123213752 -61074910 - L1ME4a LINE L1 -315 5806 5513 2391 109 0 0 chr4 123214239 123214551 -61074111 + AluSx SINE Alu 1 312 0 499 221 172 5 chr4 123214742 123214946 -61073716 - L1ME3A LINE L1 -211 5959 5722 334 263 22 44 chr4 123215445 123215582 -61073080 + L1MC5 LINE L1 7798 7931 -30 2531 64 0 10 chr4 123216319 123216633 -61072029 + AluY SINE Alu 1 311 0 2513 70 0 13 chr4 123217523 123217838 -61070824 + AluY SINE Alu 1 311 0 186 294 141 0 chr4 123218425 123218510 -61070152 + MIR SINE MIR 134 230 -32 468 250 97 0 chr4 123219107 123219231 -61069431 - MER58C DNA MER1_type 0 215 80 27 0 0 0 chr4 123220462 123220489 -61068173 + AT_rich Low_complexity Low_complexity 1 27 0 8689 198 27 21 chr4 123220782 123221946 -61066716 + L1MA9 LINE L1 3143 4299 -2013 2067 119 11 0 chr4 123221946 123222231 -61066431 + AluSx SINE Alu 5 292 -20 8689 198 27 21 chr4 123222231 123224184 -61064478 + L1MA9 LINE L1 4299 6274 -38 305 217 0 0 chr4 123224894 123224963 -61063699 + MER34C LTR ERV1 135 203 -382 1278 185 188 19 chr4 123275243 123275551 -61013111 - MSTA LTR MaLR -68 360 1 1115 204 83 4 chr4 123275741 123275901 -61012761 - AluJo SINE Alu -16 296 111 387 0 0 0 chr4 123275901 123275944 -61012718 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 1115 204 83 4 chr4 123275944 123276013 -61012649 - AluJo SINE Alu -201 111 49 1120 144 6 0 chr4 123276028 123276209 -61012453 - L1MA6 LINE L1 -33 6267 6086 1871 178 10 0 chr4 123276852 123277161 -61011501 - AluJo SINE Alu 0 312 1 568 222 0 16 chr4 123277161 123277287 -61011375 - L2 LINE L2 -7 3306 3183 2185 107 0 10 chr4 123277310 123277600 -61011062 + AluSq SINE Alu 1 287 -26 1337 119 0 0 chr4 123277700 123277885 -61010777 + AluSg/x SINE Alu 126 310 0 560 247 226 13 chr4 123277891 123278126 -61010536 + L2 LINE L2 3029 3313 0 189 328 32 24 chr4 123278266 123278391 -61010271 - MIR3 SINE MIR -76 132 7 220 258 145 0 chr4 123279086 123279148 -61009514 - MIR SINE MIR -157 105 35 234 250 0 59 chr4 123279275 123279343 -61009319 - L2 LINE L2 -8 3264 3201 284 260 14 0 chr4 123280307 123280380 -61008282 - MIR SINE MIR -108 154 81 244 309 45 9 chr4 123280531 123280641 -61008021 - MER5B DNA MER1_type -2 176 63 2779 215 28 25 chr4 123280658 123280998 -61007664 + MER82 DNA MER2_type 2 346 -307 2297 91 0 3 chr4 123280998 123281316 -61007346 - L1PB1 LINE L1 0 6151 5835 2779 215 28 25 chr4 123281316 123281625 -61007037 + MER82 DNA MER2_type 346 653 0 385 227 36 0 chr4 123282455 123282565 -61006097 + MER117 DNA MER1_type 51 164 -33 302 264 36 71 chr4 123282605 123282745 -61005917 + MIR SINE MIR 83 217 -45 892 301 63 25 chr4 123282772 123283126 -61005536 - MER34 LTR ERV1 -12 530 150 183 80 0 0 chr4 123283126 123283151 -61005511 + (TGG)n Simple_repeat Simple_repeat 2 26 0 892 301 63 25 chr4 123283151 123283307 -61005355 - MER34 LTR ERV1 -392 150 1 633 297 87 68 chr4 123284083 123284934 -61003728 - L1M4 LINE L1 -2799 3347 2481 195 107 71 18 chr4 123285183 123285199 -61003463 + GA-rich Low_complexity Low_complexity 4 18 -44 2375 94 7 3 chr4 123285199 123285507 -61003155 + AluSc SINE Alu 1 309 0 195 107 71 18 chr4 123285507 123285546 -61003116 + GA-rich Low_complexity Low_complexity 18 62 0 1871 187 18 3 chr4 123286236 123286579 -61002083 + MER7A DNA MER2_type 1 346 0 1074 277 97 53 chr4 123286655 123287339 -61001323 + L2 LINE L2 2498 3220 -93 784 269 21 5 chr4 123287404 123287597 -61001065 - MIR SINE MIR -35 227 32 871 233 48 10 chr4 123288220 123288426 -61000236 - MIR SINE MIR 0 262 49 180 186 136 34 chr4 123288456 123288515 -61000147 - MIR SINE MIR -1 261 197 409 245 245 7 chr4 123288548 123288695 -60999967 - MIR SINE MIR -55 207 26 517 274 7 7 chr4 123288857 123289003 -60999659 - MIR SINE MIR -8 254 109 37819 39 2 2 chr4 123290749 123296400 -60992262 + L1PA3 LINE L1 507 6152 -3 723 164 140 0 chr4 123296392 123296563 -60992099 + L1PB1 LINE L1 5956 6150 -1 * 988 145 23 12 chr4 123296619 123296791 -60991871 - L1MC1 LINE L1 0 6333 6160 2243 231 36 19 chr4 123296805 123297629 -60991033 - L1MEd LINE L1 -2485 3644 2807 8395 170 53 58 chr4 123297891 123299629 -60989033 - L1PA16 LINE L1 -16 6150 4460 2242 109 0 10 chr4 123299629 123299940 -60988722 + AluSc SINE Alu 1 308 -1 8395 170 53 58 chr4 123299940 123301644 -60987018 - L1PA16 LINE L1 -1706 4460 2749 894 217 127 20 chr4 123301649 123301948 -60986714 + L1P LINE L1 2162 2492 -3654 476 200 90 7 chr4 123302049 123302194 -60986468 + L1M4 LINE L1 2927 3083 -3063 189 0 0 0 chr4 123303130 123303151 -60985511 + (A)n Simple_repeat Simple_repeat 1 21 0 1589 291 67 24 chr4 123303151 123304155 -60984507 + L1M4 LINE L1 3495 4541 -1605 189 0 0 0 chr4 123304169 123304190 -60984472 + (TTG)n Simple_repeat Simple_repeat 1 21 0 257 148 19 0 chr4 123304194 123304248 -60984414 + L1M4 LINE L1 4628 4682 -1464 537 281 120 4 chr4 123304274 123304548 -60984114 + L1M4 LINE L1 4753 5058 -1088 490 286 68 38 chr4 123304564 123305342 -60983320 - L1MEd LINE L1 -4746 1564 707 24 91 0 0 chr4 123306151 123306217 -60982445 + AT_rich Low_complexity Low_complexity 1 66 0 2065 105 3 17 chr4 123306308 123306603 -60982059 + AluSx SINE Alu 1 291 -21 275 78 3 0 chr4 123306610 123306661 -60982001 - L1MA7 LINE L1 0 6291 6240 260 289 157 33 chr4 123306875 123306996 -60981666 + L2 LINE L2 3177 3312 -1 303 176 256 0 chr4 123307169 123307294 -60981368 - L1ME4a LINE L1 -41 6080 5924 284 106 87 10 chr4 123307294 123307398 -60981264 + (TA)n Simple_repeat Simple_repeat 1 112 0 268 223 58 0 chr4 123307413 123307516 -60981146 + (TA)n Simple_repeat Simple_repeat 1 109 0 236 221 32 21 chr4 123307546 123307641 -60981021 - L1ME4a LINE L1 -235 5886 5791 1046 101 54 6 chr4 123307663 123307831 -60980831 + MER30 DNA MER1_type 1 176 -54 21 0 0 0 chr4 123307956 123307977 -60980685 + AT_rich Low_complexity Low_complexity 1 21 0 1051 188 0 0 chr4 123308048 123308218 -60980444 - AluJb SINE Alu -25 287 118 2097 129 0 0 chr4 123308274 123308568 -60980094 - AluSq SINE Alu -19 294 1 439 298 82 55 chr4 123308568 123308860 -60979802 - L1ME4a LINE L1 -539 5582 5283 236 254 0 0 chr4 123309236 123309307 -60979355 - L1ME2 LINE L1 -8 6156 6086 570 206 97 87 chr4 123309383 123309468 -60979194 - L1MCa LINE L1 -4753 1673 1590 1572 178 87 31 chr4 123309468 123309823 -60978839 + THE1C LTR MaLR 1 375 0 570 206 97 87 chr4 123309823 123310103 -60978559 - L1MCa LINE L1 -4836 1590 1301 9366 77 9 75 chr4 123310103 123311576 -60977086 + SVA Other Other 10 1385 -1 570 206 97 87 chr4 123311576 123311612 -60977050 - L1MCa LINE L1 -5125 1301 1267 268 321 18 27 chr4 123311718 123311830 -60976832 + MIR SINE MIR 103 213 -49 211 330 11 23 chr4 123311928 123312016 -60976646 - L2 LINE L2 -256 3057 2971 277 119 0 0 chr4 123312120 123312162 -60976500 + L1P3 LINE L1 786 827 -5634 6318 25 0 1 chr4 123312600 123313334 -60975328 - L1PA3 LINE L1 -3 6152 5420 354 183 0 0 chr4 123313784 123313855 -60974807 + GA-rich Low_complexity Low_complexity 4 74 0 920 154 0 5 chr4 123313873 123314091 -60974571 + GA-rich Low_complexity Low_complexity 1 216 0 247 250 80 11 chr4 123314736 123314824 -60973838 + L2 LINE L2 2431 2524 -790 1979 159 3 0 chr4 123315044 123315340 -60973322 - AluSx SINE Alu -15 297 1 444 351 13 4 chr4 123315391 123315616 -60973046 - L1ME LINE L1 -461 5660 5434 233 119 24 0 chr4 123317108 123317150 -60971512 + (TCCA)n Simple_repeat Simple_repeat 3 45 0 863 146 127 0 chr4 123317360 123317525 -60971137 + L1PA16 LINE L1 5972 6157 -9 494 283 46 17 chr4 123318081 123318254 -60970408 - MIR SINE MIR -6 256 79 864 174 122 41 chr4 123318341 123318537 -60970125 - AluJo SINE Alu -30 282 71 588 29 0 0 chr4 123318537 123318607 -60970055 + (TC)n Simple_repeat Simple_repeat 2 71 0 198 0 0 0 chr4 123318606 123318628 -60970034 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 274 67 22 0 chr4 123318941 123318986 -60969676 - Alu SINE Alu -4 298 253 202 247 21 0 chr4 123318986 123319079 -60969583 + (TA)n Simple_repeat Simple_repeat 2 96 0 551 300 102 28 chr4 123320478 123320761 -60967901 + L2 LINE L2 3010 3313 0 1422 169 115 8 chr4 123321570 123321831 -60966831 + AluJb SINE Alu 1 289 -23 211 250 0 0 chr4 123321929 123321973 -60966689 + A-rich Low_complexity Low_complexity 104 147 0 674 255 75 31 chr4 123324659 123324953 -60963709 - MER102b DNA MER1_type -3 338 32 182 283 50 0 chr4 123325221 123325281 -60963381 + MIR SINE MIR 157 219 -43 189 0 0 0 chr4 123325783 123325804 -60962858 + (T)n Simple_repeat Simple_repeat 1 21 0 1329 209 19 29 chr4 123325992 123326308 -60962354 - AluSq SINE Alu 0 313 1 5071 113 68 32 chr4 123326649 123326781 -60961881 + Tigger1 DNA MER2_type 73 199 -2219 689 62 0 21 chr4 123326781 123326878 -60961784 - L1PA8 LINE L1 -8 6164 6070 5071 113 68 32 chr4 123326878 123327298 -60961364 + Tigger1 DNA MER2_type 199 603 -1815 883 110 0 0 chr4 123327298 123327416 -60961246 + FLAM_C SINE Alu 1 118 -15 186 43 0 0 chr4 123327420 123327443 -60961219 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 5071 113 68 32 chr4 123327443 123327810 -60960852 + Tigger1 DNA MER2_type 605 1031 -1387 3560 154 36 40 chr4 123327810 123328381 -60960281 + MER50 LTR ERV1 1 570 -164 2101 130 7 0 chr4 123328381 123328689 -60959973 - AluSx SINE Alu -2 310 1 3560 154 36 40 chr4 123328689 123328838 -60959824 + MER50 LTR ERV1 570 718 -16 * 8215 126 20 14 chr4 123328830 123329899 -60958763 + Tigger1 DNA MER2_type 1027 2107 -311 2260 75 17 3 chr4 123329899 123330192 -60958470 + AluY SINE Alu 1 297 -14 8215 126 20 14 chr4 123330192 123330503 -60958159 + Tigger1 DNA MER2_type 2107 2415 -3 6359 92 21 6 chr4 123330583 123331634 -60957028 + L1PA11 LINE L1 5107 6174 0 2020 136 3 10 chr4 123332940 123333249 -60955413 - AluSx SINE Alu -5 307 1 2090 127 7 3 chr4 123333522 123333829 -60954833 - AluSx SINE Alu -4 308 1 2269 109 0 3 chr4 123334356 123334659 -60954003 - AluSq SINE Alu -11 302 1 207 259 78 52 chr4 123334996 123335112 -60953550 + L3b LINE CR1 1326 1444 -139 412 274 289 15 chr4 123335452 123335653 -60953009 - MIR SINE MIR -6 256 1 2033 122 28 0 chr4 123335936 123336223 -60952439 + AluSc SINE Alu 1 295 -14 258 261 32 0 chr4 123336688 123336759 -60951903 + MIR SINE MIR 72 145 -63 2202 91 0 17 chr4 123336823 123337121 -60951541 - AluY SINE Alu -17 294 2 278 209 30 0 chr4 123337123 123337190 -60951472 + MIR SINE MIR 119 187 -75 1515 261 46 0 chr4 123337193 123337584 -60951078 - MLT1I LTR MaLR 0 409 1 307 98 197 0 chr4 123339361 123339422 -60949240 - MIR SINE MIR -105 157 85 364 283 68 54 chr4 123342927 123343132 -60945530 + L2 LINE L2 2156 2363 -951 2245 254 32 41 chr4 123343153 123343868 -60944794 - MER21B LTR ERV1 -57 806 98 468 286 75 14 chr4 123344101 123344248 -60944414 - MIR3 SINE MIR -36 172 17 23 0 0 0 chr4 123344816 123344839 -60943823 + AT_rich Low_complexity Low_complexity 1 23 0 866 135 0 0 chr4 123344839 123344972 -60943690 - L1PB4 LINE L1 -2 6154 6022 212 258 8 125 chr4 123345242 123345370 -60943292 - L2 LINE L2 -211 3061 2949 1990 157 0 3 chr4 123346785 123347090 -60941572 + AluJb SINE Alu 1 304 -8 2395 93 0 3 chr4 123347678 123347988 -60940674 - AluSx SINE Alu -3 309 1 264 292 131 22 chr4 123348324 123348461 -60940201 - MIR3 SINE MIR -1 207 56 679 246 92 14 chr4 123348572 123348779 -60939883 + MIR SINE MIR 40 262 0 287 303 61 30 chr4 123348870 123348969 -60939693 - L2 LINE L2 -3 3269 3168 186 43 0 0 chr4 123348969 123348992 -60939670 + (TG)n Simple_repeat Simple_repeat 2 24 0 222 313 49 42 chr4 123350221 123350365 -60938297 + L2 LINE L2 2346 2490 -824 460 316 24 18 chr4 123350651 123350819 -60937843 + MIR SINE MIR 90 258 -4 21 0 0 0 chr4 123353328 123353349 -60935313 + AT_rich Low_complexity Low_complexity 1 21 0 1793 162 28 7 chr4 123353396 123353680 -60934982 - AluJb SINE Alu -22 290 1 984 251 24 0 chr4 123353812 123354063 -60934599 + MIR SINE MIR 3 259 -3 21 36 0 0 chr4 123354328 123354356 -60934306 + AT_rich Low_complexity Low_complexity 1 28 0 351 212 121 89 chr4 123354824 123354966 -60933696 - L1MC5 LINE L1 -33 7928 7792 2171 133 0 0 chr4 123354966 123355267 -60933395 - AluSx SINE Alu -10 302 2 351 212 121 89 chr4 123355267 123355539 -60933123 - L1MC5 LINE L1 -169 7792 7501 757 199 78 11 chr4 123355542 123355733 -60932929 - MER3 DNA MER1_type 0 209 6 338 258 126 63 chr4 123355802 123355992 -60932670 - L1MC5 LINE L1 -530 7431 7230 508 321 15 28 chr4 123355999 123356323 -60932339 - L1ME LINE L1 -320 5801 5482 29 0 0 0 chr4 123356943 123356972 -60931690 + AT_rich Low_complexity Low_complexity 1 29 0 29177 101 12 11 chr4 123357986 123363674 -60924988 - L1PA7 LINE L1 -5 6464 758 241 25 0 0 chr4 123363775 123363815 -60924847 + Alu SINE Alu 260 299 0 2317 92 13 3 chr4 123364080 123364386 -60924276 + AluSx SINE Alu 1 309 -3 544 96 0 0 chr4 123364594 123364667 -60923995 + AluJ/FLAM SINE Alu 1 73 -239 216 350 121 21 chr4 123364889 123365029 -60923633 + L2 LINE L2 2916 3069 -203 197 355 16 0 chr4 123365127 123365189 -60923473 + L2 LINE L2 3203 3265 -7 518 252 76 0 chr4 123365211 123365330 -60923332 + MIR SINE MIR 19 146 -62 2184 115 11 0 chr4 123365338 123365625 -60923037 - AluSg SINE Alu -20 290 1 2898 80 2 2 chr4 123365974 123366372 -60922290 - MLT2A1 LTR ERVL -46 398 1 1948 127 27 51 chr4 123366466 123366837 -60921825 + THE1B LTR MaLR 1 362 -2 2283 89 0 62 chr4 123367345 123367670 -60920992 + AluSg SINE Alu 1 305 -5 2322 108 62 8 chr4 123368007 123368360 -60920302 - THE1C LTR MaLR 0 375 4 10483 98 38 43 chr4 123368363 123369950 -60918712 - THE1C-int LTR MaLR 0 1580 1 2161 129 43 32 chr4 123369950 123370321 -60918341 - THE1C LTR MaLR 0 375 1 229 198 47 105 chr4 123370574 123370660 -60918002 + MER5B DNA MER1_type 86 166 -12 21 0 0 0 chr4 123370795 123370816 -60917846 + AT_rich Low_complexity Low_complexity 1 21 0 237 271 0 0 chr4 123371087 123371135 -60917527 + G-rich Low_complexity Low_complexity 1 48 0 445 327 153 10 chr4 123373050 123373114 -60915548 + L2 LINE L2 3039 3092 -180 219 69 0 0 chr4 123373114 123373143 -60915519 + (TCCTG)n Simple_repeat Simple_repeat 2 30 0 445 327 153 10 chr4 123373143 123373280 -60915382 + L2 LINE L2 3092 3269 -3 857 219 57 86 chr4 123373954 123374410 -60914252 - L1MC5 LINE L1 -50 7911 7469 29 0 0 0 chr4 123374410 123374439 -60914223 + AT_rich Low_complexity Low_complexity 1 29 0 691 196 0 0 chr4 123374512 123374655 -60914007 - L1MC5 LINE L1 -520 7441 7299 961 180 31 21 chr4 123374738 123374932 -60913730 + MER3 DNA MER1_type 1 196 -13 1357 246 87 33 chr4 123374947 123375692 -60912970 - L1MC5 LINE L1 -757 7204 6414 351 244 119 16 chr4 123376059 123376252 -60912410 - L1MC5 LINE L1 -1804 6004 5792 1632 174 36 0 chr4 123376286 123376567 -60912095 - AluJo SINE Alu -21 291 1 231 88 0 0 chr4 123376627 123376661 -60912001 + (CAG)n Simple_repeat Simple_repeat 2 35 0 23 33 0 0 chr4 123376827 123376857 -60911805 + AT_rich Low_complexity Low_complexity 1 30 0 770 206 110 71 chr4 123378175 123378574 -60910088 - MER110A LTR ERV1 -9 459 84 4082 243 79 61 chr4 123378588 123378749 -60909913 - MER110A-int LTR ERV1 -308 4339 4182 2080 142 18 9 chr4 123378749 123379080 -60909582 - MER1B DNA MER1_type 0 337 4 4082 243 79 61 chr4 123379080 123380130 -60908532 - MER110A-int LTR ERV1 -465 4182 3081 2447 80 0 0 chr4 123380130 123380432 -60908230 + AluY SINE Alu 1 302 -9 4082 243 79 61 chr4 123380432 123381071 -60907591 - MER110A-int LTR ERV1 -1566 3081 2455 820 210 98 24 chr4 123381071 123381276 -60907386 - MER58A DNA MER1_type 0 224 5 198 240 198 31 chr4 123381454 123381550 -60907112 - L2 LINE L2 -2 3311 3200 2303 85 3 3 chr4 123381720 123382014 -60906648 + AluSc SINE Alu 1 294 -15 571 147 0 0 chr4 123382674 123382769 -60905893 - AluSx SINE Alu -1 311 217 1245 141 0 0 chr4 123382771 123382941 -60905721 - AluSx SINE Alu -142 170 1 227 31 31 0 chr4 123383019 123383051 -60905611 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 232 162 15 29 chr4 123383060 123383128 -60905534 + A-rich Low_complexity Low_complexity 1 67 0 32 26 0 0 chr4 123383238 123383277 -60905385 + AT_rich Low_complexity Low_complexity 1 39 0 667 196 65 6 chr4 123383368 123383536 -60905126 + MER96B DNA MER1_type? 2 179 -238 180 341 0 47 chr4 123383744 123383829 -60904833 - MIR3 SINE MIR -37 171 91 25 0 0 0 chr4 123384674 123384699 -60903963 + AT_rich Low_complexity Low_complexity 1 25 0 247 330 0 11 chr4 123387601 123387689 -60900973 + MIR SINE MIR 24 110 -98 2653 23 0 10 chr4 123387991 123388299 -60900363 - AluY SINE Alu -6 305 1 275 346 111 12 chr4 123388299 123388461 -60900201 + L2 LINE L2 2881 3058 -214 2763 126 24 5 chr4 123389327 123389747 -60898915 - MSTA LTR MaLR 0 428 1 9159 164 29 4 chr4 123389747 123391359 -60897303 - MSTA-int LTR MaLR 0 1651 1 2714 129 24 2 chr4 123391359 123391778 -60896884 - MSTA LTR MaLR 0 428 1 2300 92 0 3 chr4 123392102 123392396 -60896266 - AluY SINE Alu -18 293 1 309 291 74 46 chr4 123394566 123394851 -60893811 + HERVL LTR ERVL 961 1253 -4401 1386 184 95 16 chr4 123394888 123395204 -60893458 - MER2 DNA MER2_type 0 344 4 1855 132 40 48 chr4 123395644 123396022 -60892640 - THE1C LTR MaLR 0 375 1 502 313 119 45 chr4 123396232 123396556 -60892106 - HAL1b LINE L1 -879 1543 1244 1951 160 0 10 chr4 123396556 123396863 -60891799 - AluSx SINE Alu -4 308 5 1976 163 0 7 chr4 123396863 123397170 -60891492 - AluJb SINE Alu -7 305 1 502 313 119 45 chr4 123397170 123397336 -60891326 - HAL1b LINE L1 -1177 1245 39 22 0 0 0 chr4 123397688 123397710 -60890952 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr4 123402300 123402320 -60886342 + (T)n Simple_repeat Simple_repeat 1 20 0 3076 184 113 7 chr4 123403255 123404017 -60884645 - MER63C DNA MER1_type -6 924 82 1139 179 39 132 chr4 123404321 123404730 -60883932 + MLT1B LTR MaLR 1 371 -19 22 0 0 0 chr4 123404921 123404943 -60883719 + AT_rich Low_complexity Low_complexity 1 22 0 360 241 48 48 chr4 123405092 123405258 -60883404 + HAL1b LINE L1 469 634 -714 735 300 108 61 chr4 123405285 123405704 -60882958 + L1M4 LINE L1 2675 3145 -3001 704 207 0 15 chr4 123405704 123405839 -60882823 + FLAM_A SINE Alu 1 133 0 735 300 108 61 chr4 123405839 123406156 -60882506 + L1M4 LINE L1 3145 3446 -2700 225 250 134 47 chr4 123406335 123406507 -60882155 + L1MC/D LINE L1 5725 5911 -1897 2268 98 3 3 chr4 123406948 123407253 -60881409 - AluSg SINE Alu -5 305 1 901 101 16 0 chr4 123407328 123407457 -60881205 - L1PB1 LINE L1 -1 6150 6020 182 281 0 47 chr4 123407836 123407900 -60880762 - L2 LINE L2 -27 3245 3185 1445 199 33 15 chr4 123409177 123409508 -60879154 - MER44D DNA MER2_type -1 608 2 3070 245 105 7 chr4 123409600 123410640 -60878022 + L1PB1 LINE L1 12 1153 -5710 7888 171 26 10 chr4 123410641 123411146 -60877516 + L1PB1 LINE L1 1436 1932 -4930 2529 84 0 0 chr4 123411146 123411457 -60877205 + AluY SINE Alu 1 311 0 7888 171 26 10 chr4 123411457 123412841 -60875821 + L1PB1 LINE L1 1932 3394 -3468 2109 134 0 0 chr4 123412841 123413131 -60875531 - AluSg SINE Alu -20 290 1 7888 171 26 10 chr4 123413131 123414370 -60874292 + L1PB1 LINE L1 3394 4612 -2250 5097 124 7 1 chr4 123414376 123415148 -60873514 + L1PA7 LINE L1 5 780 -5681 26813 106 5 7 chr4 123415150 123420307 -60868355 + L1PA7 LINE L1 1323 6467 -2 207 0 0 0 chr4 123420319 123420342 -60868320 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 6228 174 13 18 chr4 123420353 123420878 -60867784 + L1PB1 LINE L1 4597 5123 -1744 183 42 0 0 chr4 123420878 123420902 -60867760 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6228 174 13 18 chr4 123420902 123422479 -60866183 + L1PB1 LINE L1 5123 6686 -181 5457 84 4 13 chr4 123422479 123423273 -60865389 + L1P LINE L1 1 787 -5359 872 87 40 0 chr4 123423375 123423524 -60865138 + L1MA3 LINE L1 6045 6199 -106 369 300 70 74 chr4 123423702 123423972 -60864690 + L2 LINE L2 3004 3272 0 270 285 65 32 chr4 123424538 123424661 -60864001 + L2 LINE L2 3144 3270 -2 22 35 0 0 chr4 123425274 123425303 -60863359 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr4 123425783 123425812 -60862850 + AT_rich Low_complexity Low_complexity 1 29 0 2205 92 0 0 chr4 123426450 123426752 -60861910 - AluSx SINE Alu 0 302 1 590 228 114 59 chr4 123426904 123427123 -60861539 + MIR SINE MIR 28 258 -4 380 306 29 138 chr4 123428044 123428319 -60860343 + L2 LINE L2 2990 3234 -38 23 0 0 0 chr4 123429441 123429464 -60859198 + AT_rich Low_complexity Low_complexity 1 23 0 240 172 0 0 chr4 123429464 123429522 -60859140 - L1MA7 LINE L1 0 6291 6234 337 246 52 37 chr4 123429525 123429587 -60859075 + L1MA7 LINE L1 5998 6058 -233 345 47 0 0 chr4 123429587 123429630 -60859032 + (TG)n Simple_repeat Simple_repeat 2 44 0 337 246 52 37 chr4 123429630 123429701 -60858961 + L1MA7 LINE L1 6058 6133 -158 323 360 80 0 chr4 123431153 123431303 -60857359 - MIR SINE MIR -4 258 97 444 19 0 0 chr4 123431750 123431803 -60856859 + (CA)n Simple_repeat Simple_repeat 1 53 0 24 0 0 0 chr4 123433113 123433137 -60855525 + AT_rich Low_complexity Low_complexity 1 24 0 192 163 0 0 chr4 123434674 123434717 -60853945 + (TAA)n Simple_repeat Simple_repeat 2 44 0 847 140 0 37 chr4 123435117 123435253 -60853409 - FLAM_C SINE Alu -2 131 1 305 258 94 57 chr4 123436645 123436804 -60851858 + MIR SINE MIR 33 197 -65 2364 101 0 0 chr4 123439096 123439402 -60849260 + AluSc SINE Alu 1 306 -3 270 81 0 0 chr4 123439957 123439994 -60848668 + (CAT)n Simple_repeat Simple_repeat 3 39 0 345 246 82 16 chr4 123440876 123440998 -60847664 + L1ME3A LINE L1 4217 4346 -1800 1367 229 25 3 chr4 123441032 123441539 -60847123 + MER68 LTR ERV1 1 560 -2 1874 268 109 21 chr4 123441541 123443192 -60845470 + L1ME3A LINE L1 4377 6170 0 193 325 0 26 chr4 123443409 123443486 -60845176 - L2 LINE L2 -212 3060 2986 650 259 17 35 chr4 123443520 123443694 -60844968 - MER5B DNA MER1_type -7 171 1 274 318 55 51 chr4 123443720 123443994 -60844668 - L2 LINE L2 -408 2906 2632 1445 184 10 48 chr4 123444017 123444327 -60844335 - AluJo SINE Alu -14 298 1 263 347 107 0 chr4 123444385 123444506 -60844156 + L2 LINE L2 2918 3051 -221 1494 218 94 7 chr4 123444515 123444941 -60843721 + LTR37B LTR ERV1 6 468 0 24 32 0 0 chr4 123445097 123445128 -60843534 + AT_rich Low_complexity Low_complexity 1 31 0 1864 149 3 17 chr4 123445626 123445928 -60842734 - AluSx SINE Alu -6 306 9 745 221 61 6 chr4 123446440 123446603 -60842059 + MER96 DNA MER1_type 1 172 -3 321 303 37 74 chr4 123446702 123446864 -60841798 + MER5A DNA MER1_type 4 159 -30 255 170 0 0 chr4 123447298 123447345 -60841317 + (CA)n Simple_repeat Simple_repeat 2 48 0 21 36 0 0 chr4 123447494 123447522 -60841140 + AT_rich Low_complexity Low_complexity 1 28 0 1018 302 41 47 chr4 123447703 123448167 -60840495 + L1ME2 LINE L1 6 466 -5604 938 272 50 23 chr4 123448458 123448939 -60839723 + L1ME2 LINE L1 531 1024 -5046 1178 287 19 9 chr4 123448950 123449271 -60839391 + LTR40b LTR ERVL 139 462 0 858 206 112 17 chr4 123449271 123449620 -60839042 + L1ME2 LINE L1 2721 3102 -2978 2634 58 0 0 chr4 123449620 123449928 -60838734 + AluY SINE Alu 1 308 -3 330 26 0 0 chr4 123449928 123449967 -60838695 + (TA)n Simple_repeat Simple_repeat 1 39 0 1393 211 99 32 chr4 123449972 123450375 -60838287 + MLT1D LTR MaLR 76 505 0 586 279 28 12 chr4 123450375 123450622 -60838040 + L1ME2 LINE L1 3167 3417 -2663 880 259 104 8 chr4 123450623 123451009 -60837653 + L1ME2 LINE L1 3840 4262 -1818 1024 237 83 26 chr4 123451065 123452138 -60836524 + L1ME2 LINE L1 4869 6098 0 1012 106 0 19 chr4 123452283 123452443 -60836219 - L1PB1 LINE L1 0 6151 5995 847 147 0 0 chr4 123452671 123452807 -60835855 - L1PA16 LINE L1 -16 6150 6015 2899 103 19 18 chr4 123453161 123453687 -60834975 - L1PA16 LINE L1 -391 5765 4396 6497 197 3 7 chr4 123453738 123455108 -60833554 - L1 LINE L1 -840 5306 3943 185 0 0 39 chr4 123455784 123455810 -60832852 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 2428 88 23 3 chr4 123455825 123456167 -60832495 - L1PA10 LINE L1 -11 6157 5809 2726 81 22 0 chr4 123456319 123456689 -60831973 + L1PA15 LINE L1 5783 6160 -5 248 330 125 9 chr4 123456691 123456803 -60831859 - MIR3 SINE MIR -13 195 71 650 284 51 0 chr4 123457549 123457597 -60831065 - MIR3 SINE MIR -5 203 159 2210 96 3 0 chr4 123457597 123457888 -60830774 + AluSx SINE Alu 1 292 -20 650 284 51 0 chr4 123457888 123458015 -60830647 - MIR3 SINE MIR -49 159 19 194 355 16 0 chr4 123458037 123458099 -60830563 - L2 LINE L2 -7 3265 3203 212 350 121 21 chr4 123458197 123458337 -60830325 - L2 LINE L2 -203 3069 2916 532 96 0 0 chr4 123458559 123458632 -60830030 - AluJ/FLAM SINE Alu -239 73 1 476 149 11 0 chr4 123459735 123459829 -60828833 + CT-rich Low_complexity Low_complexity 2 96 0 796 270 36 0 chr4 123459886 123460082 -60828580 + MIR SINE MIR 60 262 0 558 272 91 39 chr4 123460869 123460986 -60827676 - MIR SINE MIR -1 261 151 2144 112 0 16 chr4 123460986 123461299 -60827363 + AluSg SINE Alu 2 309 -1 558 272 91 39 chr4 123461299 123461413 -60827249 - MIR SINE MIR -111 151 18 365 279 162 30 chr4 123462234 123462436 -60826226 + L1MC/D LINE L1 5425 5649 -476 707 278 86 54 chr4 123462444 123463244 -60825418 - L1M4 LINE L1 -2057 4089 3252 1269 295 38 28 chr4 123463273 123463670 -60824992 - MER115 DNA AcHobo 0 693 293 402 277 14 40 chr4 123463755 123463903 -60824759 + L2 LINE L2 3170 3313 0 * 469 322 202 20 chr4 123463894 123464188 -60824474 - L2 LINE L2 -830 2484 2245 336 24 0 0 chr4 123464188 123464229 -60824433 + (GA)n Simple_repeat Simple_repeat 1 41 0 469 322 202 20 chr4 123464229 123464533 -60824129 - L2 LINE L2 -1069 2245 1777 191 352 14 0 chr4 123464710 123464781 -60823881 + L3b LINE CR1 1112 1183 -400 349 312 121 12 chr4 123464827 123465000 -60823662 + L3b LINE CR1 1277 1468 -115 204 318 63 24 chr4 123466116 123466207 -60822455 - L2 LINE L2 0 3313 3214 2394 126 69 12 chr4 123466207 123466612 -60822050 + MSTA LTR MaLR 1 428 0 204 318 63 24 chr4 123466612 123466646 -60822016 - L2 LINE L2 -99 3214 3183 430 214 0 0 chr4 123466676 123466760 -60821902 - MLT1K LTR MaLR 0 588 505 6738 62 5 0 chr4 123467034 123468432 -60820230 - L1PA8 LINE L1 0 6172 4758 410 298 84 6 chr4 123468546 123468724 -60819938 - L3b LINE CR1 -115 1468 1277 4778 72 8 0 chr4 123468733 123469371 -60819291 - L1P LINE L1 -1393 4753 4111 198 322 22 33 chr4 123471152 123471242 -60817420 - MIR3 SINE MIR -13 195 107 281 326 184 23 chr4 123471339 123471557 -60817105 - MIR SINE MIR -4 258 6 230 241 19 0 chr4 123471891 123471945 -60816717 - L2 LINE L2 0 3313 3259 300 53 0 0 chr4 123471969 123472007 -60816655 + (TG)n Simple_repeat Simple_repeat 1 38 0 845 290 125 45 chr4 123472591 123473056 -60815606 - MLT1J LTR MaLR -8 503 2 215 217 0 0 chr4 123476178 123476224 -60812438 + CT-rich Low_complexity Low_complexity 1 46 0 273 57 0 0 chr4 123477172 123477207 -60811455 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 4897 49 0 0 chr4 123477207 123477797 -60810865 - L1PA8 LINE L1 -24 6148 5559 478 187 0 11 chr4 123478791 123478882 -60809780 - MER5A DNA MER1_type -87 102 13 199 0 65 0 chr4 123479515 123479546 -60809116 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 12497 195 27 44 chr4 123480031 123482179 -60806483 - L1PB2 LINE L1 -2 6865 4681 1324 110 0 16 chr4 123482179 123482370 -60806292 - AluY SINE Alu -6 305 118 12497 195 27 44 chr4 123482370 123485583 -60803079 - L1PB2 LINE L1 -2186 4681 1393 6485 224 153 26 chr4 123485576 123488167 -60800495 - L1P4 LINE L1 -521 5642 2700 * 3300 189 27 30 chr4 123488168 123488876 -60799786 + L1MB1 LINE L1 5412 6119 -49 2219 123 3 0 chr4 123488876 123489178 -60799484 + AluSx SINE Alu 1 303 -9 3300 189 27 30 chr4 123489178 123489216 -60799446 + L1MB1 LINE L1 6119 6156 -12 655 279 12 6 chr4 123489498 123489659 -60799003 + MIR SINE MIR 18 179 -83 359 323 8 15 chr4 123489900 123490033 -60798629 + CT-rich Low_complexity Low_complexity 1 132 0 1304 262 107 10 chr4 123491334 123491735 -60796927 + LTR16A LTR ERVL 1 440 -10 343 311 17 25 chr4 123491752 123491871 -60796791 - MIR SINE MIR -61 201 84 28 29 0 0 chr4 123493678 123493713 -60794949 + AT_rich Low_complexity Low_complexity 1 35 0 321 262 57 25 chr4 123494658 123494780 -60793882 + MER103 DNA DNA 27 152 -14 230 206 79 0 chr4 123494963 123495026 -60793636 - MIR SINE MIR -125 137 70 542 333 50 9 chr4 123495831 123496050 -60792612 - MIR SINE MIR -34 228 1 29 0 0 0 chr4 123496479 123496508 -60792154 + AT_rich Low_complexity Low_complexity 1 29 0 446 368 70 42 chr4 123496546 123496729 -60791933 - L2 LINE L2 -12 3260 3084 2085 105 3 26 chr4 123496729 123497033 -60791629 + AluSq SINE Alu 5 301 -12 446 368 70 42 chr4 123497033 123497205 -60791457 - L2 LINE L2 -188 3084 2895 324 0 0 0 chr4 123498520 123498556 -60790106 + (CA)n Simple_repeat Simple_repeat 2 37 0 319 324 159 19 chr4 123504263 123504470 -60784192 - L3b LINE CR1 -228 1355 1120 23 0 0 0 chr4 123504662 123504685 -60783977 + AT_rich Low_complexity Low_complexity 1 23 0 2332 79 7 7 chr4 123506030 123506333 -60782329 + AluSc SINE Alu 1 303 -6 1053 268 160 73 chr4 123506919 123507492 -60781170 - MER77 LTR ERV1 -11 594 57 23 97 0 0 chr4 123507544 123507616 -60781046 + AT_rich Low_complexity Low_complexity 1 72 0 217 289 88 69 chr4 123507845 123508004 -60780658 - L2 LINE L2 -8 3305 3144 325 216 68 0 chr4 123508804 123508878 -60779784 - MIR SINE MIR -38 224 146 386 217 63 42 chr4 123508953 123509096 -60779566 + LTR37B LTR ERV1 6 151 -317 386 211 63 106 chr4 123509195 123509479 -60779183 + LTR37B LTR ERV1 197 468 0 1732 186 40 9 chr4 123509511 123509861 -60778801 - MLT1A1 LTR MaLR -4 361 1 2301 90 0 13 chr4 123509925 123510224 -60778438 - AluSx SINE Alu -17 295 1 1144 250 53 77 chr4 123510314 123510823 -60777839 - MLT1D LTR MaLR 0 487 1 415 243 22 81 chr4 123513337 123513473 -60775189 - L2 LINE L2 0 3313 3186 468 265 183 35 chr4 123513609 123513839 -60774823 - Zaphod DNA AcHobo -1 4030 3767 1573 294 62 21 chr4 123513865 123514426 -60774236 - Zaphod DNA AcHobo -3446 585 2 475 308 143 18 chr4 123514997 123515221 -60773441 - MIR SINE MIR -5 257 6 275 202 244 0 chr4 123515726 123515845 -60772817 - MLT1L LTR MaLR -8 607 460 332 260 63 47 chr4 123516009 123516136 -60772526 - MER69A DNA AcHobo -10 167 39 1383 203 102 32 chr4 123516432 123516865 -60771797 + MLT1C LTR MaLR 1 463 -4 2345 110 0 3 chr4 123517363 123517673 -60770989 - AluSx SINE Alu -3 309 1 192 40 0 0 chr4 123519466 123519491 -60769171 + (GA)n Simple_repeat Simple_repeat 1 25 0 594 284 70 12 chr4 123520675 123520918 -60767744 - MIR SINE MIR 0 262 6 445 297 55 8 chr4 123521369 123521555 -60767107 + MIR SINE MIR 13 206 -56 423 295 98 36 chr4 123521623 123521816 -60766846 + L2 LINE L2 3107 3311 -2 221 220 20 0 chr4 123521820 123521870 -60766792 + (TTA)n Simple_repeat Simple_repeat 3 53 0 263 228 59 153 chr4 123521965 123522099 -60766563 - MIR3 SINE MIR -10 198 88 2191 71 6 62 chr4 123522099 123522423 -60766239 + AluY SINE Alu 4 309 -2 263 228 59 153 chr4 123522423 123522490 -60766172 - MIR3 SINE MIR -120 88 16 24 0 0 0 chr4 123524983 123525007 -60763655 + AT_rich Low_complexity Low_complexity 1 24 0 367 300 84 34 chr4 123525109 123525466 -60763196 - L1ME4a LINE L1 -158 5963 5589 30 0 0 0 chr4 123526503 123526533 -60762129 + AT_rich Low_complexity Low_complexity 1 30 0 345 309 45 81 chr4 123527475 123527698 -60760964 - MIR SINE MIR -10 252 38 33 0 0 0 chr4 123528333 123528366 -60760296 + AT_rich Low_complexity Low_complexity 1 33 0 1164 145 113 121 chr4 123528975 123529257 -60759405 - AluJb SINE Alu -27 285 6 4836 211 118 108 chr4 123529440 123531362 -60757300 + L1MCa LINE L1 3 1957 -4469 1985 202 137 67 chr4 123531362 123532134 -60756528 - LTR1B LTR ERV1 0 826 1 4836 211 118 108 chr4 123532134 123532662 -60756000 + L1MCa LINE L1 1957 2478 -3948 559 225 140 50 chr4 123532683 123532883 -60755779 - MLT1J2 LTR MaLR 0 450 233 240 323 30 20 chr4 123533330 123533429 -60755233 + L2 LINE L2 2258 2357 -957 412 282 179 0 chr4 123533590 123533959 -60754703 + L1MCa LINE L1 2424 2858 -3568 210 143 0 0 chr4 123534017 123534052 -60754610 + (TA)n Simple_repeat Simple_repeat 2 36 0 366 308 76 48 chr4 123534053 123534303 -60754359 + L1MCa LINE L1 2925 3181 -3245 483 293 226 19 chr4 123534334 123534542 -60754120 - MIR SINE MIR 0 262 12 336 263 49 45 chr4 123534561 123534804 -60753858 + L1MCa LINE L1 3211 3454 -2972 295 77 19 19 chr4 123534830 123534882 -60753780 + (CATTT)n Simple_repeat Simple_repeat 3 54 0 1880 159 7 0 chr4 123534883 123535184 -60753478 - AluJo SINE Alu -7 305 3 24 0 0 0 chr4 123535249 123535273 -60753389 + AT_rich Low_complexity Low_complexity 1 24 0 245 319 127 24 chr4 123535352 123535690 -60752972 + L1MCa LINE L1 3668 4040 -2386 1459 206 74 30 chr4 123535724 123536131 -60752531 - Charlie7 DNA MER1_type -684 1928 1504 219 320 102 16 chr4 123537219 123537363 -60751299 + MIR SINE MIR 39 192 -64 2012 121 14 0 chr4 123537836 123538118 -60750544 - AluSg SINE Alu -24 286 1 2394 121 111 5 chr4 123538756 123539143 -60749519 + MSTA LTR MaLR 1 428 0 24 0 0 0 chr4 123541233 123541257 -60747405 + AT_rich Low_complexity Low_complexity 1 24 0 27 29 0 0 chr4 123543330 123543364 -60745298 + AT_rich Low_complexity Low_complexity 1 34 0 25 75 0 0 chr4 123543601 123543654 -60745008 + AT_rich Low_complexity Low_complexity 1 53 0 180 111 0 0 chr4 123544531 123544558 -60744104 + (T)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr4 123544996 123545017 -60743645 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 123545826 123545854 -60742808 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr4 123546983 123547006 -60741656 + (T)n Simple_repeat Simple_repeat 1 23 0 2249 119 3 0 chr4 123547431 123547742 -60740920 + AluSp SINE Alu 1 312 -1 834 61 61 0 chr4 123547749 123547864 -60740798 + L1PA8 LINE L1 6046 6167 -5 22 0 0 0 chr4 123547993 123548015 -60740647 + AT_rich Low_complexity Low_complexity 1 22 0 279 264 108 84 chr4 123549084 123549251 -60739411 - MER21A LTR ERV1 -353 578 408 390 281 105 0 chr4 123550006 123550120 -60738542 - MER91A DNA MER1_type -22 174 49 247 292 25 58 chr4 123551074 123551194 -60737468 - MIR SINE MIR -127 135 20 256 309 107 0 chr4 123551796 123551880 -60736782 + L2 LINE L2 3221 3313 0 651 263 0 0 chr4 123552830 123552967 -60735695 + Tigger3(Golem) DNA MER2_type 6 142 -2887 * 1327 152 138 0 chr4 123552965 123553189 -60735473 + Tigger3(Golem) DNA MER2_type 2772 3026 -3 2339 148 51 17 chr4 123553532 123553945 -60734717 + MSTA LTR MaLR 1 427 -1 23 68 0 0 chr4 123554731 123554775 -60733887 + AT_rich Low_complexity Low_complexity 1 44 0 3169 143 26 9 chr4 123555028 123555596 -60733066 + L1MB3 LINE L1 5603 6180 -3 278 276 88 105 chr4 123555646 123555747 -60732915 - MIR3 SINE MIR -24 238 137 2369 104 7 0 chr4 123555747 123556055 -60732607 + AluSx SINE Alu 1 310 -2 278 276 88 105 chr4 123556055 123556166 -60732496 - MIR3 SINE MIR -125 137 8 30 27 0 0 chr4 123559950 123559987 -60728675 + AT_rich Low_complexity Low_complexity 1 37 0 228 162 0 0 chr4 123560596 123560633 -60728029 + MADE1 DNA Mariner 42 78 -2 1973 117 11 7 chr4 123562457 123562731 -60725931 + AluSx SINE Alu 19 293 -19 22 80 0 0 chr4 123562822 123562872 -60725790 + AT_rich Low_complexity Low_complexity 1 50 0 240 35 0 0 chr4 123564121 123564150 -60724512 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 398 158 21 0 chr4 123564942 123565037 -60723625 + Charlie5 DNA MER1_type 2448 2544 -68 2632 166 37 3 chr4 123565041 123565862 -60722800 + L1PA16 LINE L1 4886 5736 -430 3069 136 29 69 chr4 123565862 123566456 -60722206 + LTR8 LTR ERV1 1 570 -121 264 118 0 78 chr4 123566456 123566507 -60722155 + L1PA16 LINE L1 5746 5792 -374 272 167 14 0 chr4 123566524 123566596 -60722066 + (TA)n Simple_repeat Simple_repeat 2 74 0 303 247 71 12 chr4 123566596 123566681 -60721981 + L1MC4 LINE L1 6614 6703 -1339 2157 148 30 0 chr4 123566682 123567047 -60721615 + L1PA16 LINE L1 5782 6157 -9 267 169 0 0 chr4 123567057 123567116 -60721546 + Charlie5 DNA MER1_type 2531 2589 -23 783 196 52 0 chr4 123567128 123567281 -60721381 - MER119 DNA MER1_type -253 330 170 660 314 84 51 chr4 123567439 123567963 -60720699 - L2 LINE L2 -2 3311 2766 278 250 0 0 chr4 123567984 123568040 -60720622 + L2 LINE L2 3214 3269 -3 2207 155 59 29 chr4 123568249 123568762 -60719900 + MLT2A2 LTR ERVL 1 554 0 274 234 31 16 chr4 123569082 123569146 -60719516 + MLT1D LTR MaLR 1 65 -440 245 203 85 17 chr4 123569155 123569214 -60719448 + L2 LINE L2 3003 3065 -248 1877 206 44 25 chr4 123569216 123569648 -60719014 + MLT1D LTR MaLR 66 505 0 2141 105 31 0 chr4 123570020 123570314 -60718348 - AluSx SINE Alu -9 303 1 2037 169 8 30 chr4 123570360 123570733 -60717929 + MLT1A1 LTR MaLR 1 365 0 3557 179 76 21 chr4 123570762 123571522 -60717140 + L1MA10 LINE L1 5525 6326 -8 1978 144 36 28 chr4 123572043 123572404 -60716258 + THE1B LTR MaLR 1 364 0 1161 184 0 37 chr4 123572764 123572981 -60715681 + AluJo SINE Alu 82 290 -22 22 35 0 0 chr4 123575078 123575107 -60713555 + AT_rich Low_complexity Low_complexity 1 29 0 396 186 35 0 chr4 123576193 123576279 -60712383 + L1ME3 LINE L1 6072 6160 -2 35 41 0 0 chr4 123577153 123577202 -60711460 + AT_rich Low_complexity Low_complexity 1 49 0 2262 81 3 0 chr4 123577915 123578212 -60710450 + MER41A-int LTR ERV1 5647 5944 -2 3403 101 4 0 chr4 123578212 123578678 -60709984 + MER41A LTR ERV1 1 468 -86 883 263 78 17 chr4 123579379 123579611 -60709051 - MIR SINE MIR -10 252 7 181 382 0 29 chr4 123581227 123581329 -60707333 + L2 LINE L2 2925 3023 -249 245 280 121 50 chr4 123581425 123581607 -60707055 + L2 LINE L2 3119 3313 0 1403 69 0 0 chr4 123581764 123581939 -60706723 - AluY SINE Alu -7 304 130 893 239 104 75 chr4 123582220 123582518 -60706144 + MSTD LTR MaLR 1 314 -82 2195 113 3 3 chr4 123582518 123582827 -60705835 + AluSg SINE Alu 1 309 -1 893 239 104 75 chr4 123582827 123582913 -60705749 + MSTD LTR MaLR 314 396 0 23 33 0 0 chr4 123583201 123583231 -60705431 + AT_rich Low_complexity Low_complexity 1 30 0 300 369 96 21 chr4 123583404 123583591 -60705071 - L3 LINE CR1 -102 1475 1275 185 333 189 0 chr4 123583673 123583763 -60704899 - L2 LINE L2 -4 3268 3162 371 336 66 42 chr4 123583865 123584464 -60704198 - L2 LINE L2 -191 3081 2472 403 293 23 23 chr4 123584659 123584833 -60703829 - L2 LINE L2 -1173 2141 1968 1451 321 18 6 chr4 123586439 123586943 -60701719 - MLT1J LTR MaLR -1 510 1 2276 114 0 3 chr4 123587314 123587621 -60701041 + AluSx SINE Alu 3 308 -4 669 176 47 24 chr4 123588058 123588228 -60700434 - MER53 DNA DNA -8 181 8 426 211 24 41 chr4 123588253 123588386 -60700276 + MLT1H LTR MaLR 37 165 -384 382 312 45 0 chr4 123588401 123588555 -60700107 + MLT1H LTR MaLR 389 549 0 240 222 0 56 chr4 123588938 123589010 -60699652 - Zaphod DNA AcHobo -37 3994 3927 2218 81 3 48 chr4 123589484 123589793 -60698869 + AluSc SINE Alu 1 295 -14 233 318 106 23 chr4 123590314 123590446 -60698216 - L2 LINE L2 0 3313 3171 1806 151 178 8 chr4 123591073 123591438 -60697224 + MSTA LTR MaLR 1 427 -1 10036 128 4 34 chr4 123591441 123593067 -60695595 + MSTA-int LTR MaLR 3 1580 0 1336 157 242 39 chr4 123593067 123593423 -60695239 + MSTA LTR MaLR 1 428 0 1862 235 60 34 chr4 123593676 123594208 -60694454 - MER74A LTR ERVL 0 558 13 922 243 32 9 chr4 123594797 123595015 -60693647 + MER58A DNA MER1_type 1 223 -1 358 192 90 23 chr4 123595673 123595850 -60692812 + L1M4 LINE L1 3073 3261 -2885 790 153 20 0 chr4 123595889 123596039 -60692623 + L1MB4 LINE L1 6027 6179 -1 450 66 26 0 chr4 123596224 123596300 -60692362 + L1MB4 LINE L1 6102 6179 -1 1804 267 90 17 chr4 123596937 123597520 -60691142 - MLT1G LTR MaLR 0 590 1 322 321 60 87 chr4 123598051 123598309 -60690353 - L2 LINE L2 0 3313 3049 2287 53 0 7 chr4 123598309 123598593 -60690069 + AluY SINE Alu 29 310 -1 322 321 60 87 chr4 123598593 123598902 -60689760 - L2 LINE L2 -264 3049 2646 248 371 72 55 chr4 123599136 123599497 -60689165 + L2 LINE L2 2906 3272 0 21 36 0 0 chr4 123599655 123599683 -60688979 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr4 123600068 123600112 -60688550 + AT_rich Low_complexity Low_complexity 1 44 0 714 267 185 6 chr4 123651675 123651998 -60636664 - MLT1J1 LTR MaLR -10 436 68 553 249 117 9 chr4 123653980 123654193 -60634469 + MER20B DNA MER1_type 70 305 -478 1757 223 147 64 chr4 123654225 123654771 -60633891 - MLT1E1 LTR MaLR -8 646 56 813 243 73 1 chr4 123654812 123655165 -60633497 + MER20B DNA MER1_type 331 742 -41 1877 107 0 4 chr4 123655203 123655475 -60633187 + L1P5 LINE L1 5321 5591 -560 12180 125 5 7 chr4 123655575 123657508 -60631154 - L1P LINE L1 -1140 5006 3079 37 23 0 0 chr4 123658475 123658519 -60630143 + AT_rich Low_complexity Low_complexity 1 44 0 762 151 50 0 chr4 123658519 123658638 -60630024 - AluSg SINE Alu -185 125 1 24 32 0 0 chr4 123658638 123658669 -60629993 + AT_rich Low_complexity Low_complexity 1 31 0 1584 146 65 3 chr4 123658673 123658981 -60629681 - L1MA8 LINE L1 -6 6285 5959 1534 180 7 39 chr4 123659014 123659320 -60629342 - AluJb SINE Alu -16 296 1 1433 218 112 7 chr4 123659322 123659680 -60628982 - MSTD LTR MaLR -1 456 1 1777 105 10 44 chr4 123659681 123659977 -60628685 - L1MA8 LINE L1 -363 5928 5643 304 250 26 0 chr4 123659980 123660056 -60628606 + L1MC4 LINE L1 6614 6691 -1351 1564 200 33 33 chr4 123660182 123660547 -60628115 + MLT1A1 LTR MaLR 1 365 0 403 241 128 30 chr4 123661995 123662128 -60626534 + MIR SINE MIR 117 262 0 182 61 0 30 chr4 123662268 123662301 -60626361 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 550 297 36 41 chr4 123662301 123662496 -60626166 - L2 LINE L2 -17 3296 3103 759 179 39 11 chr4 123662522 123662701 -60625961 + MER53 DNA DNA 6 189 0 300 268 16 49 chr4 123663614 123663737 -60624925 + GA-rich Low_complexity Low_complexity 4 122 0 243 0 0 0 chr4 123665085 123665112 -60623550 + (CTA)n Simple_repeat Simple_repeat 1 27 0 215 194 0 0 chr4 123665123 123665159 -60623503 + (TG)n Simple_repeat Simple_repeat 2 37 0 1284 196 9 0 chr4 123665160 123665385 -60623277 - AluJb SINE Alu -24 288 62 2042 109 4 0 chr4 123665429 123665703 -60622959 - AluSx SINE Alu -16 296 22 257 296 99 0 chr4 123666977 123667048 -60621614 - L2 LINE L2 -1 3312 3235 3896 102 22 12 chr4 123667198 123667797 -60620865 + L1PB1 LINE L1 5545 6149 -2 231 229 0 0 chr4 123668320 123668381 -60620281 + CT-rich Low_complexity Low_complexity 2 62 0 370 305 234 4 chr4 123669467 123669758 -60618904 + L2 LINE L2 2696 3050 -263 1474 161 95 46 chr4 123669759 123670107 -60618555 - MLT1A1 LTR MaLR 0 365 1 323 103 0 17 chr4 123670229 123670287 -60618375 + (TATG)n Simple_repeat Simple_repeat 2 58 0 29 0 0 0 chr4 123673957 123673986 -60614676 + AT_rich Low_complexity Low_complexity 1 29 0 244 182 36 0 chr4 123674275 123674330 -60614332 - MER116 DNA Mariner -17 63 7 558 114 0 0 chr4 123675296 123675384 -60613278 + (TCCA)n Simple_repeat Simple_repeat 2 89 0 265 351 127 19 chr4 123675937 123676142 -60612520 + MIR SINE MIR 20 246 -16 1131 208 46 91 chr4 123676872 123677497 -60611165 + MER52A LTR ERV1 437 761 -259 367 278 316 48 chr4 123677547 123677968 -60610694 + MER52A LTR ERV1 1222 1755 0 319 234 114 82 chr4 123678053 123678256 -60610406 - L1MEd LINE L1 -2852 3277 3057 2376 71 0 3 chr4 123678256 123678552 -60610110 + AluY SINE Alu 1 295 -16 319 234 114 82 chr4 123678552 123678690 -60609972 - L1MEd LINE L1 -3072 3057 2925 351 281 82 25 chr4 123679438 123679634 -60609028 - L1MEd LINE L1 -3735 2394 2188 665 236 100 25 chr4 123679926 123680206 -60608456 - L1MC4a LINE L1 -1915 5962 5662 1979 211 17 38 chr4 123680326 123680800 -60607862 + MLT1D LTR MaLR 25 488 -17 305 212 24 12 chr4 123680952 123681037 -60607625 + HsTC2 DNA Tc2 2 87 -1811 327 284 25 0 chr4 123681053 123681134 -60607528 - L1MEd LINE L1 -5496 623 541 348 306 50 64 chr4 123681175 123681394 -60607268 - L1MEd LINE L1 -5581 538 323 2176 227 37 118 chr4 123681768 123682954 -60605708 - HAL1 LINE L1 -687 1820 731 539 319 47 41 chr4 123682966 123683304 -60605358 - HAL1 LINE L1 -1953 554 215 22 0 0 0 chr4 123685227 123685249 -60603413 + AT_rich Low_complexity Low_complexity 1 22 0 4226 120 9 5 chr4 123685449 123686081 -60602581 - MER41B LTR ERV1 0 635 1 1025 271 49 67 chr4 123686536 123687086 -60601576 - L2 LINE L2 0 3313 2781 3464 205 171 9 chr4 123687093 123687971 -60600691 + LTR28 LTR ERV1 1 1020 0 287 316 116 13 chr4 123688196 123688351 -60600311 - MIR SINE MIR -35 227 57 318 258 57 43 chr4 123688593 123688802 -60599860 - L1MC4a LINE L1 -2334 5543 5332 2112 106 0 23 chr4 123688841 123689142 -60599520 - AluSc SINE Alu -9 300 7 281 240 20 10 chr4 123689347 123689447 -60599215 - L1MC4a LINE L1 -2202 4013 3913 * 8525 176 253 3 chr4 123689445 123689746 -60598916 + L1P LINE L1 2914 3138 -3031 225 0 0 0 chr4 123689746 123689771 -60598891 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 8525 176 253 3 chr4 123689771 123691444 -60597218 + L1P LINE L1 3138 5420 -749 367 295 89 39 chr4 123691485 123692225 -60596437 - L1MEc LINE L1 -3323 2892 2152 26 0 0 0 chr4 123693105 123693131 -60595531 + AT_rich Low_complexity Low_complexity 1 26 0 353 303 148 45 chr4 123693259 123693414 -60595248 - MIR3 SINE MIR 0 208 38 186 321 0 0 chr4 123693585 123693638 -60595024 - L2 LINE L2 -43 3229 3177 535 302 157 8 chr4 123693861 123694103 -60594559 - L2 LINE L2 -497 2817 2540 537 260 119 27 chr4 123694174 123694393 -60594269 + MLT1H LTR MaLR 68 306 -243 487 275 7 0 chr4 123694455 123694593 -60594069 + MLT1H LTR MaLR 410 548 -1 225 0 0 0 chr4 123694651 123694676 -60593986 + (CA)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chr4 123695985 123696006 -60592656 + AT_rich Low_complexity Low_complexity 1 21 0 1280 141 69 3 chr4 123697131 123697371 -60591291 - L1M2 LINE L1 -661 5630 5383 389 91 0 15 chr4 123697349 123697415 -60591247 - L1M2 LINE L1 -1856 4290 4226 * 395 215 168 7 chr4 123697422 123697571 -60591091 - L1ME LINE L1 -516 5646 5474 21 71 0 0 chr4 123697777 123697819 -60590843 + AT_rich Low_complexity Low_complexity 1 42 0 192 40 0 0 chr4 123698000 123698025 -60590637 + (CAGAGA)n Simple_repeat Simple_repeat 2 26 0 22 70 0 0 chr4 123699312 123699355 -60589307 + AT_rich Low_complexity Low_complexity 1 43 0 309 318 78 29 chr4 123699646 123699888 -60588774 + MLT1H LTR MaLR 26 279 -270 636 289 58 0 chr4 123700618 123700791 -60587871 + MLT1J2 LTR MaLR 3 185 -265 288 282 26 17 chr4 123701756 123701873 -60586789 - MER97c DNA MER1_type? -3 1087 970 313 258 16 16 chr4 123701914 123702042 -60586620 + A-rich Low_complexity Low_complexity 2 129 0 297 280 37 0 chr4 123702139 123702246 -60586416 - MER97b DNA MER1_type? -194 859 749 1348 201 51 3 chr4 123702246 123702539 -60586123 + L1ME1 LINE L1 5579 5885 -281 * 4495 217 19 12 chr4 123702529 123703858 -60584804 + L1PA15-16 LINE L1 1887 3219 -3630 889 178 0 33 chr4 123703858 123704034 -60584628 + L1PA15 LINE L1 5988 6161 -4 308 333 22 19 chr4 123704095 123704365 -60584297 + L1 LINE L1 4330 4600 -1546 25 31 0 0 chr4 123704714 123704746 -60583916 + AT_rich Low_complexity Low_complexity 1 32 0 2678 157 28 2 chr4 123705887 123706346 -60582316 - Tigger1 DNA MER2_type -1947 471 1 395 323 60 8 chr4 123706961 123707094 -60581568 + L2 LINE L2 3132 3271 -1 395 296 105 13 chr4 123707238 123707390 -60581272 - MIR SINE MIR -66 196 31 431 168 224 24 chr4 123707391 123707516 -60581146 + MLT1B LTR MaLR 1 150 -240 406 192 0 0 chr4 123707514 123707587 -60581075 + MLT1B LTR MaLR 318 390 0 * 198 191 0 0 chr4 123707591 123707638 -60581024 + GA-rich Low_complexity Low_complexity 1 47 0 202 240 20 0 chr4 123707677 123707727 -60580935 + L3b LINE CR1 1416 1466 -117 37842 86 7 9 chr4 123707986 123714152 -60574510 - L1PA6 LINE L1 -1 6153 2 285 181 83 56 chr4 123714810 123714882 -60573780 - L2 LINE L2 -2 3311 3238 322 244 6 35 chr4 123717463 123717635 -60571027 + CT-rich Low_complexity Low_complexity 4 170 0 844 244 78 31 chr4 123718854 123719112 -60569550 + LTR16C LTR ERVL 221 490 -1 191 376 21 32 chr4 123719507 123719693 -60568969 + L2 LINE L2 2564 2747 -567 249 33 0 0 chr4 123719693 123719723 -60568939 + (CA)n Simple_repeat Simple_repeat 1 30 0 204 125 0 0 chr4 123719725 123719757 -60568905 + (TA)n Simple_repeat Simple_repeat 2 33 0 1356 249 51 59 chr4 123719930 123720076 -60568586 + MLT1D LTR MaLR 1 147 -358 1892 176 15 48 chr4 123720076 123720473 -60568189 + MLT1B LTR MaLR 3 386 -4 1356 249 51 59 chr4 123720473 123720556 -60568106 + MLT1D LTR MaLR 147 229 -276 2554 105 11 24 chr4 123720556 123720936 -60567726 - THE1C LTR MaLR 0 375 1 1356 249 51 59 chr4 123720936 123721214 -60567448 + MLT1D LTR MaLR 229 505 0 455 267 149 6 chr4 123721219 123721380 -60567282 + MIR SINE MIR 73 256 -6 24 0 0 0 chr4 123721456 123721480 -60567182 + AT_rich Low_complexity Low_complexity 1 24 0 6722 12 0 0 chr4 123721480 123722239 -60566423 - L1HS LINE L1 -5 6150 5392 * 7031 23 0 0 chr4 123722237 123723075 -60565587 + L1HS LINE L1 4566 5403 -743 1401 146 5 10 chr4 123723129 123723335 -60565327 + AluSq SINE Alu 1 205 -108 221 337 20 20 chr4 123723529 123723627 -60565035 - MIR SINE MIR -140 122 25 7143 53 6 1 chr4 123726703 123728328 -60560334 - L1PA5 LINE L1 0 6154 4523 4704 97 0 1 chr4 123729333 123729986 -60558676 - L1P LINE L1 -4820 1326 675 1624 48 0 9 chr4 123729986 123730196 -60558466 + L1PA5 LINE L1 5947 6154 0 460 297 0 23 chr4 123730295 123730423 -60558239 - MIR SINE MIR -115 147 23 213 250 19 0 chr4 123730458 123730510 -60558152 - MER5A DNA MER1_type -78 111 59 1827 160 21 50 chr4 123731329 123731705 -60556957 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr4 123732286 123732307 -60556355 + AT_rich Low_complexity Low_complexity 1 21 0 252 59 0 0 chr4 123733063 123733097 -60555565 + (TG)n Simple_repeat Simple_repeat 1 34 0 944 212 49 0 chr4 123734402 123734586 -60554076 - MER20B DNA MER1_type -26 193 1 231 114 0 0 chr4 123734853 123734888 -60553774 + (CA)n Simple_repeat Simple_repeat 2 36 0 3133 268 71 43 chr4 123734944 123736549 -60552113 + L1ME LINE L1 1952 3585 -2630 2189 121 0 3 chr4 123736549 123736856 -60551806 + AluSq SINE Alu 1 306 -7 3133 268 71 43 chr4 123736856 123737155 -60551507 + L1ME LINE L1 3585 3874 -2341 252 254 17 0 chr4 123737613 123737672 -60550990 - MIR SINE MIR -91 171 112 251 335 64 26 chr4 123738205 123738518 -60550144 + L1ME LINE L1 5571 5895 -295 225 95 63 32 chr4 123739135 123739198 -60549464 + (TA)n Simple_repeat Simple_repeat 2 66 0 2086 154 156 58 chr4 123739216 123739780 -60548882 - LTR1B LTR ERV1 -207 619 1 195 273 136 23 chr4 123741779 123741867 -60546795 - MIR3 SINE MIR -23 185 88 21 0 0 0 chr4 123741895 123741916 -60546746 + AT_rich Low_complexity Low_complexity 1 21 0 535 338 45 66 chr4 123743819 123744484 -60544178 + L1MEd LINE L1 3 653 -5466 349 309 38 56 chr4 123745448 123745679 -60542983 - HAL1 LINE L1 -963 1544 1319 801 221 63 88 chr4 123745679 123746090 -60542572 + MER57A LTR ERV1 1 401 -2 349 309 38 56 chr4 123746090 123746198 -60542464 - HAL1 LINE L1 -1188 1319 1211 1049 188 22 5 chr4 123747521 123747744 -60540918 - MER96B DNA MER1_type? -189 228 2 236 299 93 31 chr4 123748109 123748400 -60540262 - HAL1 LINE L1 -1190 1317 1009 29 60 0 0 chr4 123748412 123748462 -60540200 + AT_rich Low_complexity Low_complexity 1 50 0 228 317 0 49 chr4 123748473 123748487 -60540175 - L2 LINE L2 -208 3064 3051 2300 194 127 50 chr4 123748487 123749254 -60539408 + LTR1B LTR ERV1 1 826 0 228 317 0 49 chr4 123749254 123749321 -60539341 - L2 LINE L2 -221 3051 2987 2089 111 4 0 chr4 123750487 123750767 -60537895 - AluSp SINE Alu -30 283 3 347 190 70 20 chr4 123751014 123751114 -60537548 + MIR SINE MIR 96 200 -62 335 240 29 10 chr4 123751927 123752031 -60536631 + MER103 DNA DNA 4 109 -57 25 0 0 0 chr4 123753552 123753577 -60535085 + AT_rich Low_complexity Low_complexity 1 25 0 1578 164 20 34 chr4 123753583 123753881 -60534781 - MLT1B LTR MaLR 0 390 97 31 0 0 0 chr4 123754353 123754384 -60534278 + AT_rich Low_complexity Low_complexity 1 31 0 1725 243 114 38 chr4 123754567 123755118 -60533544 - MLT1E LTR MaLR 0 593 1 1684 230 73 9 chr4 123755673 123756266 -60532396 + MER20B DNA MER1_type 119 783 0 485 320 27 0 chr4 123756296 123756443 -60532219 + MER20B DNA MER1_type 98 248 -535 284 232 60 80 chr4 123756693 123756844 -60531818 + MIR SINE MIR 74 221 -41 45 34 0 0 chr4 123756905 123756964 -60531698 + AT_rich Low_complexity Low_complexity 1 59 0 2297 211 19 21 chr4 123756968 123757490 -60531172 + MER63 DNA MER1_type 541 1061 0 550 303 51 0 chr4 123757492 123757726 -60530936 + L1M4 LINE L1 3805 4050 -2096 23 0 0 0 chr4 123757875 123757898 -60530764 + AT_rich Low_complexity Low_complexity 1 23 0 1554 142 28 16 chr4 123757958 123758205 -60530457 + AluSp SINE Alu 1 250 -63 26 50 0 0 chr4 123758783 123758823 -60529839 + AT_rich Low_complexity Low_complexity 1 40 0 229 219 27 0 chr4 123758956 123759029 -60529633 + (TATATG)n Simple_repeat Simple_repeat 3 77 0 22 56 0 0 chr4 123759264 123759300 -60529362 + AT_rich Low_complexity Low_complexity 1 36 0 26 30 0 0 chr4 123759371 123759404 -60529258 + AT_rich Low_complexity Low_complexity 1 33 0 11529 124 20 5 chr4 123760258 123762043 -60526619 - Tigger1 DNA MER2_type -16 2402 590 25 65 0 0 chr4 123764395 123764441 -60524221 + AT_rich Low_complexity Low_complexity 1 46 0 2253 104 0 0 chr4 123765870 123766169 -60522493 - AluSg SINE Alu -11 299 1 966 167 11 0 chr4 123767116 123767309 -60521353 - L1M2 LINE L1 -496 5667 5505 1534 196 14 7 chr4 123767368 123767644 -60521018 - MLT2B2 LTR ERVL -237 278 1 231 36 0 0 chr4 123769314 123769342 -60519320 + (TG)n Simple_repeat Simple_repeat 2 29 0 273 29 0 0 chr4 123769505 123769539 -60519123 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 22930 167 30 22 chr4 123770437 123776778 -60511884 - L1PA10 LINE L1 0 6483 6 217 302 93 72 chr4 123777772 123777911 -60510751 - MIR SINE MIR -30 232 91 1785 125 4 15 chr4 123778285 123778549 -60510113 - AluSc SINE Alu -14 295 35 3576 187 16 11 chr4 123778571 123779298 -60509364 - L1MA9 LINE L1 -38 6274 5544 2450 176 13 22 chr4 123779332 123779793 -60508869 + MSTB2 LTR MaLR 1 457 0 220 385 86 14 chr4 123779823 123780174 -60508488 + L2 LINE L2 431 806 -2508 305 338 96 45 chr4 123780260 123780397 -60508265 + L2 LINE L2 1978 2107 -1207 1648 172 11 46 chr4 123780397 123780769 -60507893 - L1MA10 LINE L1 -1 6333 5975 305 338 96 45 chr4 123780769 123780945 -60507717 + L2 LINE L2 2107 2307 -1007 271 307 134 22 chr4 123782081 123782260 -60506402 - L2 LINE L2 -2 3311 3113 1199 289 48 75 chr4 123782300 123783029 -60505633 - L2 LINE L2 -420 2894 2186 214 273 0 26 chr4 123783384 123783454 -60505208 + G-rich Low_complexity Low_complexity 1 68 0 23 0 0 0 chr4 123783609 123783632 -60505030 + AT_rich Low_complexity Low_complexity 1 23 0 1747 202 52 60 chr4 123783794 123784298 -60504364 - MLT1D LTR MaLR 0 505 6 894 271 21 25 chr4 123787079 123787319 -60501343 - MIR SINE MIR 0 262 24 215 334 169 43 chr4 123787434 123788509 -60500153 + L2 LINE L2 1741 2951 -363 302 289 0 0 chr4 123788762 123788845 -60499817 - MIR SINE MIR -114 148 66 1581 264 59 34 chr4 123789142 123789710 -60498952 + MLT1E LTR MaLR 6 585 -8 22 0 0 0 chr4 123791928 123791950 -60496712 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 123792414 123792437 -60496225 + AT_rich Low_complexity Low_complexity 1 23 0 1868 152 92 0 chr4 123792666 123793001 -60495661 - MER47A DNA MER2_type 0 366 1 3144 185 37 11 chr4 123795150 123795792 -60492870 + MER67B LTR ERV1 1 659 -2 2568 110 3 0 chr4 123796510 123796864 -60491798 - THE1A LTR MaLR 0 355 1 281 322 68 8 chr4 123797769 123797887 -60490775 + MIR SINE MIR 103 227 -35 24 32 0 0 chr4 123799041 123799072 -60489590 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr4 123799158 123799181 -60489481 + AT_rich Low_complexity Low_complexity 1 23 0 251 180 0 0 chr4 123799290 123799340 -60489322 - MER53 DNA DNA -126 63 14 412 110 96 0 chr4 123799340 123799413 -60489249 - MADE1 DNA Mariner 0 80 1 309 312 83 69 chr4 123799461 123799843 -60488819 - L2 LINE L2 -249 3023 2628 297 234 28 50 chr4 123800032 123800173 -60488489 + MER112 DNA MER1_type 65 202 -58 24 0 0 0 chr4 123800201 123800225 -60488437 + AT_rich Low_complexity Low_complexity 1 24 0 348 318 68 42 chr4 123800236 123800472 -60488190 + L1M3c LINE L1 173 565 -5738 789 148 25 0 chr4 123800568 123800690 -60487972 - MSTA LTR MaLR 0 428 304 229 129 0 0 chr4 123800796 123800827 -60487835 + L1M3c LINE L1 1001 1031 -5272 3571 231 142 44 chr4 123800924 123802484 -60486178 + L1M3c LINE L1 804 2429 -3953 1309 206 45 31 chr4 123802484 123802776 -60485886 + AluJo SINE Alu 3 298 -14 3571 231 142 44 chr4 123802776 123802891 -60485771 + L1M3c LINE L1 2429 2531 -3851 13310 228 32 44 chr4 123802935 123803951 -60484711 + L1MB2 LINE L1 2 1028 -5458 186 103 0 0 chr4 123803951 123803980 -60484682 + (CAA)n Simple_repeat Simple_repeat 2 30 0 13310 228 32 44 chr4 123803980 123809233 -60479429 + L1MB2 LINE L1 1028 6486 0 373 349 30 45 chr4 123809459 123809657 -60479005 - MIR SINE MIR -65 197 3 27 0 0 0 chr4 123810874 123810901 -60477761 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr4 123810973 123810997 -60477665 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr4 123812138 123812170 -60476492 + AT_rich Low_complexity Low_complexity 1 32 0 230 182 18 36 chr4 123812575 123812630 -60476032 + CT-rich Low_complexity Low_complexity 4 57 0 315 0 0 0 chr4 123868347 123868382 -60420280 + (TG)n Simple_repeat Simple_repeat 2 36 0 250 379 34 38 chr4 123869026 123869261 -60419401 + L2 LINE L2 2650 2883 -431 213 258 202 11 chr4 123869296 123869385 -60419277 + MIR SINE MIR 11 116 -146 1032 306 108 33 chr4 123869422 123870451 -60418211 + L1MEc LINE L1 37 1142 -5254 375 191 51 64 chr4 123870508 123870665 -60417997 + L1MEc LINE L1 2827 2981 -3234 618 253 22 28 chr4 123870685 123870867 -60417795 - MLT1E-int LTR MaLR -1189 182 2 1683 241 87 64 chr4 123870868 123871399 -60417263 - MLT1E LTR MaLR 0 593 51 267 275 20 13 chr4 123871400 123871534 -60417128 + (TA)n Simple_repeat Simple_repeat 1 138 -12 2006 139 3 0 chr4 123871534 123871822 -60416840 - AluSp SINE Alu -24 289 1 267 275 20 13 chr4 123871822 123871836 -60416826 + (TA)n Simple_repeat Simple_repeat 138 150 0 294 143 0 0 chr4 123871971 123872020 -60416642 + (CA)n Simple_repeat Simple_repeat 2 50 0 1910 129 7 0 chr4 123872593 123872873 -60415789 - AluSx SINE Alu -30 282 1 40 49 0 0 chr4 123873356 123873417 -60415245 + AT_rich Low_complexity Low_complexity 1 61 0 1165 231 31 31 chr4 123873485 123873806 -60414856 - L1ME1 LINE L1 -5 6161 5841 585 206 35 14 chr4 123873815 123873956 -60414706 - L1ME1 LINE L1 -1038 5108 4965 512 185 281 14 chr4 123875249 123875395 -60413267 + MER5A DNA MER1_type 4 188 -1 777 176 12 18 chr4 123876629 123876794 -60411868 + L1MA5 LINE L1 6137 6300 0 252 236 0 0 chr4 123876914 123876969 -60411693 + (TTCA)n Simple_repeat Simple_repeat 2 56 0 245 315 64 30 chr4 123876969 123877172 -60411490 - L2 LINE L2 -157 3156 2947 2294 60 3 0 chr4 123877686 123877970 -60410692 + AluSx SINE Alu 13 297 -15 182 146 73 0 chr4 123878460 123878501 -60410161 + L2 LINE L2 3268 3311 -2 256 382 51 19 chr4 123878625 123878782 -60409880 + MIR3 SINE MIR 32 193 -15 2093 99 7 14 chr4 123879364 123879658 -60409004 - AluSp SINE Alu -18 295 4 249 277 40 40 chr4 123881413 123881514 -60407148 - MIR3 SINE MIR -10 198 98 317 336 154 37 chr4 123881529 123881853 -60406809 - L2 LINE L2 0 3272 2911 2214 119 0 0 chr4 123882022 123882324 -60406338 - AluSg SINE Alu -8 302 1 22 56 0 0 chr4 123883112 123883148 -60405514 + AT_rich Low_complexity Low_complexity 1 36 0 1517 218 0 3 chr4 123883465 123883759 -60404903 + AluJb SINE Alu 12 304 -8 10401 29 0 1 chr4 123883870 123885879 -60402783 - L1PA4 LINE L1 0 6155 4147 2377 28 3 0 chr4 123885879 123886160 -60402502 + L1PA3 LINE L1 5872 6155 0 253 318 27 0 chr4 123886224 123886334 -60402328 - MER94 DNA DNA -6 128 16 5354 152 20 12 chr4 123886890 123887804 -60400858 + MER49 LTR ERV1 3 923 0 757 302 127 24 chr4 123888358 123888821 -60399841 + LTR33 LTR ERVL 11 521 0 288 237 0 54 chr4 123889247 123889340 -60399322 - MLT1L LTR MaLR -103 512 425 2511 48 0 6 chr4 123889543 123889855 -60398807 + AluY SINE Alu 1 310 -1 2483 136 49 0 chr4 123890174 123890580 -60398082 + MSTB LTR MaLR 1 426 0 1794 62 0 0 chr4 123890733 123890959 -60397703 - L1P LINE L1 -5920 226 1 * 2144 184 38 78 chr4 123890957 123891895 -60396767 - L1MCb LINE L1 -4853 1192 499 1428 239 81 76 chr4 123891958 123892539 -60396123 - L1MCa LINE L1 -5824 602 19 22 35 0 0 chr4 123892592 123892621 -60396041 + AT_rich Low_complexity Low_complexity 1 29 0 1840 297 24 2 chr4 123892656 123893157 -60395505 - LTR40a LTR ERVL -5 514 3 441 271 31 8 chr4 123893165 123893294 -60395368 + MIR SINE MIR 28 159 -103 1277 194 0 0 chr4 123893339 123893556 -60395106 + AluSg/x SINE Alu 85 301 -11 231 204 0 0 chr4 123893556 123893605 -60395057 + GA-rich Low_complexity Low_complexity 1 49 0 640 261 73 33 chr4 123895187 123895432 -60393230 - LTR33 LTR ERVL -5 516 262 26 50 0 0 chr4 123895628 123895668 -60392994 + AT_rich Low_complexity Low_complexity 1 40 0 386 307 61 30 chr4 123895959 123896190 -60392472 - L1M4 LINE L1 -3188 3194 2957 3099 176 137 25 chr4 123896227 123896388 -60392274 + L1PB4 LINE L1 5105 5247 -909 1758 169 41 22 chr4 123896388 123896756 -60391906 + THE1C LTR MaLR 1 375 0 3099 176 137 25 chr4 123896756 123897545 -60391117 + L1PB4 LINE L1 5247 6156 0 251 290 37 89 chr4 123897682 123897806 -60390856 + Charlie2 DNA MER1_type 86 196 -2586 2198 124 30 30 chr4 123897806 123898170 -60390492 + THE1B LTR MaLR 1 364 0 251 290 37 89 chr4 123898170 123898259 -60390403 + Charlie2 DNA MER1_type 196 288 -2494 2167 102 0 33 chr4 123898348 123898652 -60390010 + AluSg SINE Alu 1 294 -16 190 106 43 0 chr4 123898697 123898744 -60389918 + (TA)n Simple_repeat Simple_repeat 2 50 0 258 222 44 22 chr4 123899243 123899378 -60389284 + (TA)n Simple_repeat Simple_repeat 1 138 0 322 314 24 8 chr4 123899446 123899570 -60389092 - L1M4 LINE L1 -4227 2157 2032 2302 226 61 66 chr4 123899602 123900721 -60387941 + L1M1 LINE L1 3410 4516 -3049 1489 158 0 4 chr4 123900723 123900957 -60387705 + AluSq SINE Alu 2 234 -79 1764 225 19 0 chr4 123900957 123901321 -60387341 + MLT-int LTR MaLR 262 632 -1103 539 68 53 167 chr4 123901321 123901453 -60387209 - MLT2A1 LTR ERVL 0 444 328 3740 116 30 71 chr4 123901788 123902433 -60386229 + THE1-int LTR MaLR 176 793 -787 204 125 0 0 chr4 123902690 123902722 -60385940 + (T)n Simple_repeat Simple_repeat 1 32 0 23 0 0 0 chr4 123903945 123903968 -60384694 + AT_rich Low_complexity Low_complexity 1 23 0 713 319 32 4 chr4 123904308 123904556 -60384106 + MIR SINE MIR 8 262 0 785 234 67 82 chr4 123905996 123906471 -60382191 - LTR37B LTR ERV1 0 468 1 2007 104 4 0 chr4 123906580 123906849 -60381813 - AluSg1 SINE Alu -2 307 38 930 128 17 0 chr4 123907132 123907304 -60381358 + CT-rich Low_complexity Low_complexity 4 178 0 2206 173 5 13 chr4 123908318 123908711 -60379951 - MLT1B LTR MaLR 0 390 1 1154 181 44 4 chr4 123909371 123909642 -60379020 + L1MA8 LINE L1 6010 6291 0 25 51 0 0 chr4 123909687 123909726 -60378936 + AT_rich Low_complexity Low_complexity 1 39 0 281 262 41 33 chr4 123911702 123911824 -60376838 + MER103 DNA DNA 17 139 -27 10107 22 0 0 chr4 123911902 123913082 -60375580 - L1HS LINE L1 -983 5163 3984 7957 11 0 0 chr4 123913082 123914083 -60374579 + L1HS LINE L1 5155 6155 0 216 0 0 0 chr4 123914087 123914111 -60374551 + (A)n Simple_repeat Simple_repeat 1 24 0 294 197 33 0 chr4 123914115 123914176 -60374486 - MIR3 SINE MIR -40 168 106 22 35 0 0 chr4 123914861 123914890 -60373772 + AT_rich Low_complexity Low_complexity 1 29 0 784 243 52 9 chr4 123915654 123915864 -60372798 + MER20 DNA MER1_type 1 219 0 319 200 50 0 chr4 123917578 123917638 -60371024 + MER20 DNA MER1_type 157 219 0 932 288 137 10 chr4 123917895 123918212 -60370450 + L2 LINE L2 2526 2801 -512 2720 107 0 3 chr4 123918212 123918587 -60370075 + THE1C LTR MaLR 2 375 0 932 288 137 10 chr4 123918587 123918949 -60369713 + L2 LINE L2 2801 3307 -6 240 35 0 0 chr4 123918958 123918987 -60369675 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 1844 142 4 0 chr4 123919469 123919737 -60368925 + AluY SINE Alu 2 270 -41 3080 121 8 14 chr4 123920493 123920981 -60367681 + L1PA15 LINE L1 5681 6165 0 650 319 61 9 chr4 123921304 123921533 -60367129 - MIR SINE MIR -7 255 15 495 303 81 10 chr4 123921588 123921786 -60366876 + MIR SINE MIR 37 248 -14 186 43 0 0 chr4 123921786 123921809 -60366853 + (TC)n Simple_repeat Simple_repeat 2 24 0 25 51 0 0 chr4 123922063 123922102 -60366560 + AT_rich Low_complexity Low_complexity 1 39 0 1535 147 38 0 chr4 123922881 123923146 -60365516 + L1PB3 LINE L1 5880 6154 0 183 80 0 0 chr4 123923730 123923755 -60364907 + (TTTTC)n Simple_repeat Simple_repeat 5 29 0 26 30 0 0 chr4 123923913 123923946 -60364716 + AT_rich Low_complexity Low_complexity 1 33 0 189 74 0 0 chr4 123924827 123924854 -60363808 + (CAGG)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr4 123925382 123925403 -60363259 + AT_rich Low_complexity Low_complexity 1 21 0 2893 122 7 7 chr4 123925836 123926270 -60362392 + MER57B LTR ERV1 1 434 0 24613 172 13 20 chr4 123926359 123932295 -60356367 + L1P4 LINE L1 11 7255 -351 3412 94 16 10 chr4 123932310 123932808 -60355854 + L1PA10 LINE L1 5664 6164 -4 240 367 67 0 chr4 123933047 123933167 -60355495 + L3b LINE CR1 1419 1546 -37 181 296 19 37 chr4 123933245 123933299 -60355363 + MIR SINE MIR 90 142 -66 219 69 0 0 chr4 123934852 123934881 -60353781 + (TA)n Simple_repeat Simple_repeat 2 30 0 31 44 0 0 chr4 123935296 123935341 -60353321 + AT_rich Low_complexity Low_complexity 1 45 0 193 309 96 11 chr4 123935705 123935799 -60352863 + L2 LINE L2 2989 3090 -223 683 167 37 25 chr4 123935950 123936112 -60352550 - MER96B DNA MER1_type? -78 339 176 750 325 95 0 chr4 123936114 123936462 -60352200 + HERVL LTR ERVL 2876 3256 -2398 546 322 56 6 chr4 123936545 123936919 -60351743 + LTR67 LTR ERVL 113 531 -26 2279 42 0 14 chr4 123939555 123939871 -60348791 - AluY SINE Alu 0 312 1 203 184 0 0 chr4 123940962 123941000 -60347662 + A-rich Low_complexity Low_complexity 1 38 0 2208 130 31 6 chr4 123941018 123941373 -60347289 + THE1B LTR MaLR 1 364 0 520 375 71 17 chr4 123941396 123941804 -60346858 + L2 LINE L2 2302 2731 -583 1009 293 63 16 chr4 123941967 123942875 -60345787 + L1ME3A LINE L1 5149 6163 -7 27 0 0 0 chr4 123943300 123943327 -60345335 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr4 123943615 123943638 -60345024 + AT_rich Low_complexity Low_complexity 1 23 0 524 288 121 10 chr4 123944392 123944590 -60344072 - MIR SINE MIR -42 220 1 2201 175 49 0 chr4 123945196 123945602 -60343060 + MSTB LTR MaLR 1 426 0 1807 174 18 9 chr4 123946317 123946657 -60342005 + MER2 DNA MER2_type 2 344 0 1577 210 3 0 chr4 123949684 123949975 -60338687 - AluJo SINE Alu -20 292 1 727 274 137 72 chr4 123950319 123950706 -60337956 + MLT1H LTR MaLR 122 533 -16 3394 252 42 19 chr4 123950805 123951833 -60336829 + L1M4 LINE L1 658 1709 -4833 259 128 0 0 chr4 123951836 123951875 -60336787 - L1M4 LINE L1 -615 5569 5531 6182 137 30 8 chr4 123951875 123952875 -60335787 - Tigger1 DNA MER2_type 0 2418 1397 2779 171 26 30 chr4 123952890 123953421 -60335241 - Tigger1 DNA MER2_type -1886 532 4 757 180 3 65 chr4 123953423 123953477 -60335185 - L1M4 LINE L1 -651 5480 5424 664 25 0 0 chr4 123953477 123953556 -60335106 - L1PA5 LINE L1 -6 6148 6070 757 180 3 65 chr4 123953556 123953685 -60334977 - L1M4 LINE L1 -707 5424 5357 3102 269 106 39 chr4 123954368 123955840 -60332822 + L2 LINE L2 586 2155 -1159 215 352 67 29 chr4 123955906 123956011 -60332651 + L2 LINE L2 2299 2407 -907 195 343 100 0 chr4 123956036 123956106 -60332556 - L2 LINE L2 -592 2722 2646 22 35 0 0 chr4 123956267 123956296 -60332366 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr4 123956319 123956357 -60332305 + AT_rich Low_complexity Low_complexity 1 38 0 1338 211 57 4 chr4 123956364 123956629 -60332033 + AluJo SINE Alu 5 283 -19 263 85 21 0 chr4 123956629 123956676 -60331986 + (TA)n Simple_repeat Simple_repeat 2 49 0 230 258 15 0 chr4 123958363 123958429 -60330233 - Charlie5 DNA MER1_type -644 1968 1902 237 132 0 0 chr4 123958721 123958759 -60329903 + (TG)n Simple_repeat Simple_repeat 1 38 0 213 39 0 0 chr4 123958835 123958861 -60329801 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 26 0 0 0 chr4 123959583 123959609 -60329053 + AT_rich Low_complexity Low_complexity 1 26 0 217 246 0 0 chr4 123960206 123960263 -60328399 + (TA)n Simple_repeat Simple_repeat 1 57 0 215 250 0 0 chr4 123961333 123961385 -60327277 + T-rich Low_complexity Low_complexity 1 52 0 715 254 43 19 chr4 123961723 123961932 -60326730 - MIR SINE MIR 0 262 49 907 258 39 4 chr4 123962069 123962298 -60326364 - MIR SINE MIR 0 262 26 203 346 86 0 chr4 123962415 123962496 -60326166 + L2 LINE L2 3183 3270 -2 206 324 67 38 chr4 123963163 123963268 -60325394 - MIR SINE MIR -64 144 37 310 311 74 17 chr4 123963383 123963556 -60325106 + MIR SINE MIR 20 204 -58 627 291 134 61 chr4 123963655 123964177 -60324485 - L2 LINE L2 0 3313 2757 2187 97 0 10 chr4 123964177 123964487 -60324175 + AluSq SINE Alu 1 307 -6 627 291 134 61 chr4 123964487 123964543 -60324119 - L2 LINE L2 -556 2757 2707 2948 164 32 4 chr4 123964544 123965073 -60323589 - L1PA12 LINE L1 -5179 2402 1859 414 235 255 7 chr4 123965080 123965229 -60323433 - L2 LINE L2 -600 2714 2529 675 269 94 58 chr4 123965245 123965497 -60323165 - L2 LINE L2 -1030 2284 2012 2169 95 0 7 chr4 123965497 123965801 -60322861 + AluSg SINE Alu 1 302 -8 675 269 94 58 chr4 123965801 123965942 -60322720 - L2 LINE L2 -1302 2012 1877 278 259 222 15 chr4 123966154 123966289 -60322373 + L2 LINE L2 2599 2761 -553 186 317 89 41 chr4 123966479 123966602 -60322060 + L2 LINE L2 3184 3312 -1 287 324 66 33 chr4 123968215 123968397 -60320265 + L3b LINE CR1 1371 1558 -25 25 51 0 0 chr4 123969109 123969148 -60319514 + AT_rich Low_complexity Low_complexity 1 39 0 295 295 87 19 chr4 123970201 123970345 -60318317 + MIR SINE MIR 45 194 -14 2072 115 0 10 chr4 123970864 123971160 -60317502 + AluSq SINE Alu 1 293 -20 197 119 24 0 chr4 123971234 123971276 -60317386 + (TA)n Simple_repeat Simple_repeat 1 43 0 420 267 91 38 chr4 123972377 123972573 -60316089 - MER5B DNA MER1_type 0 189 2 5928 107 25 3 chr4 123972624 123973514 -60315148 - L1PA13 LINE L1 -1 6162 5254 371 351 68 56 chr4 123973524 123973793 -60314869 + L2 LINE L2 2243 2522 -792 1822 201 11 62 chr4 123973793 123974227 -60314435 + MLT2D LTR ERVL 3 414 0 371 351 68 56 chr4 123974227 123974458 -60314204 + L2 LINE L2 2522 2749 -565 180 0 0 0 chr4 123974578 123974598 -60314064 + (CATA)n Simple_repeat Simple_repeat 2 21 0 562 232 217 34 chr4 123974839 123975046 -60313616 - MIR SINE MIR -17 245 1 2763 92 97 0 chr4 123975210 123975634 -60313028 + MER4C LTR ERV1 1 465 0 1811 35 17 0 chr4 123976150 123976381 -60312281 - L1PA4 LINE L1 -750 5396 5162 6287 40 0 0 chr4 123976381 123977138 -60311524 + L1PA4 LINE L1 5396 6153 -2 21 0 0 0 chr4 123977189 123977210 -60311452 + AT_rich Low_complexity Low_complexity 1 21 0 1566 224 87 24 chr4 123980413 123980872 -60307790 + MLT1D LTR MaLR 18 505 0 386 283 35 21 chr4 123980998 123981143 -60307519 + MLT1J LTR MaLR 74 220 -291 29 47 0 0 chr4 123981568 123981611 -60307051 + AT_rich Low_complexity Low_complexity 1 43 0 203 356 0 46 chr4 123984073 123984160 -60304502 - MIR3 SINE MIR -118 90 8 743 214 128 59 chr4 123984391 123984783 -60303879 - L1MC5 LINE L1 -48 7913 7495 13080 214 46 13 chr4 123984809 123988656 -60300006 + L1M1 LINE L1 2624 6601 -964 749 150 0 0 chr4 123988659 123988772 -60299890 - L1 LINE L1 -1161 4985 4873 435 291 103 11 chr4 123989014 123989189 -60299473 + MIR SINE MIR 44 234 -28 264 342 98 11 chr4 123990075 123990259 -60298403 + MIR SINE MIR 20 219 -43 29 0 0 0 chr4 123990504 123990533 -60298129 + AT_rich Low_complexity Low_complexity 1 29 0 13333 22 0 0 chr4 123990533 123992111 -60296551 - L1PA3 LINE L1 -753 5393 3816 6409 30 1 0 chr4 123992111 123992861 -60295801 + L1PA3 LINE L1 5396 6150 -5 216 0 0 0 chr4 123992865 123992889 -60295773 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 246 223 159 87 chr4 123994214 123994560 -60294102 + L1MEd LINE L1 976 1346 -5026 310 293 99 55 chr4 123994563 123994744 -60293918 + L1MEd LINE L1 1246 1434 -4950 596 301 144 32 chr4 123995130 123995500 -60293162 - HAL1 LINE L1 -1184 1323 887 180 0 0 0 chr4 123995500 123995520 -60293142 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 596 301 144 32 chr4 123995520 123995620 -60293042 - HAL1 LINE L1 -1620 887 800 693 303 139 28 chr4 123996235 123996704 -60291958 + LTR33 LTR ERVL 1 521 0 21 57 0 0 chr4 123997934 123997969 -60290693 + AT_rich Low_complexity Low_complexity 1 35 0 2826 7 0 0 chr4 123998016 123998325 -60290337 + AluYa5 SINE Alu 1 309 -2 2411 63 0 0 chr4 123998737 123999036 -60289626 - AluY SINE Alu -12 299 1 15587 83 1 1 chr4 123999153 124001283 -60287379 + L1P LINE L1 2919 5047 -1099 1594 174 38 55 chr4 124001562 124001929 -60286733 + MLT1A1 LTR MaLR 3 363 -2 7456 224 63 30 chr4 124001929 124003603 -60285059 + MLT1A1-int LTR MaLR 3 1731 -4 1369 163 58 100 chr4 124003607 124003988 -60284674 + MLT1A1 LTR MaLR 1 365 0 331 352 117 45 chr4 124004368 124004811 -60283851 - L2 LINE L2 -400 2914 2440 2176 80 7 10 chr4 124005003 124005303 -60283359 - AluY SINE Alu -10 301 3 293 324 0 29 chr4 124006433 124006535 -60282127 - L2 LINE L2 0 3313 3215 1860 119 0 0 chr4 124006579 124006839 -60281823 + AluSc SINE Alu 37 296 -13 652 303 76 12 chr4 124007019 124007270 -60281392 - MLT2F LTR ERVL -396 267 1 201 226 0 0 chr4 124007557 124007610 -60281052 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 2722 94 0 15 chr4 124007621 124008026 -60280636 - L1PA13 LINE L1 -6 6157 5759 763 221 0 0 chr4 124008027 124008167 -60280495 - AluJb SINE Alu -25 287 148 186 43 0 0 chr4 124008531 124008554 -60280108 + (CA)n Simple_repeat Simple_repeat 1 23 0 328 172 17 0 chr4 124008894 124008952 -60279710 + MLT1C LTR MaLR 361 419 -48 1181 154 81 0 chr4 124009430 124009651 -60279011 + L1MC1 LINE L1 6095 6333 0 22 35 0 0 chr4 124009882 124009911 -60278751 + AT_rich Low_complexity Low_complexity 1 29 0 278 333 0 11 chr4 124010231 124010318 -60278344 - L2 LINE L2 -50 3222 3137 247 286 154 33 chr4 124010326 124010508 -60278154 + MIR SINE MIR 57 260 -2 218 184 0 0 chr4 124010624 124010662 -60278000 + (TG)n Simple_repeat Simple_repeat 1 38 0 742 317 29 12 chr4 124010736 124010982 -60277680 + MIR SINE MIR 13 262 0 44 80 0 0 chr4 124012468 124012568 -60276094 + AT_rich Low_complexity Low_complexity 1 100 0 28 29 0 0 chr4 124013097 124013132 -60275530 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr4 124014666 124014697 -60273965 + AT_rich Low_complexity Low_complexity 1 31 0 1287 186 48 17 chr4 124014772 124015063 -60273599 - MLT1A1 LTR MaLR 0 365 66 484 332 53 23 chr4 124015078 124015473 -60273189 + L1ME2 LINE L1 105 511 -5885 3058 250 65 72 chr4 124015708 124017329 -60271333 + L1ME2 LINE L1 1732 3364 -2851 460 145 13 0 chr4 124017329 124017405 -60271257 + FRAM/FAM SINE Alu 1 77 -108 3058 250 65 72 chr4 124017405 124017466 -60271196 + L1ME2 LINE L1 3364 3424 -2791 1458 238 34 29 chr4 124017466 124017882 -60270780 - LTR52 LTR ERVL -3 418 1 3058 250 65 72 chr4 124017882 124018891 -60269771 + L1ME2 LINE L1 3424 4439 -1776 315 49 0 0 chr4 124018891 124018932 -60269730 + (CA)n Simple_repeat Simple_repeat 2 42 0 3058 250 65 72 chr4 124018932 124019169 -60269493 + L1ME2 LINE L1 4439 4676 -1539 1160 174 14 14 chr4 124019169 124019388 -60269274 - MER20 DNA MER1_type 0 219 1 3058 250 65 72 chr4 124019388 124019903 -60268759 + L1ME2 LINE L1 4676 5341 -874 2124 222 157 39 chr4 124019934 124020739 -60267923 + L1ME2 LINE L1 5325 6224 -9 250 81 0 0 chr4 124020710 124020747 -60267915 + L1MB7 LINE L1 6206 6242 -11 * 35 0 0 0 chr4 124020747 124020782 -60267880 + AT_rich Low_complexity Low_complexity 1 35 0 260 163 25 50 chr4 124021090 124021170 -60267492 + T-rich Low_complexity Low_complexity 3 80 0 323 361 0 23 chr4 124021618 124021751 -60266911 - MIR3 SINE MIR -30 178 49 726 173 22 21 chr4 124021877 124022157 -60266505 + CT-rich Low_complexity Low_complexity 1 280 0 239 339 123 29 chr4 124022207 124022378 -60266284 + MIR SINE MIR 1 187 -75 26 50 0 0 chr4 124022394 124022434 -60266228 + AT_rich Low_complexity Low_complexity 1 40 0 21 57 0 0 chr4 124022678 124022713 -60265949 + AT_rich Low_complexity Low_complexity 1 35 0 4490 173 50 91 chr4 124023065 124023182 -60265480 - L1MC3 LINE L1 -743 5403 5283 1704 188 36 14 chr4 124023182 124023539 -60265123 + MLT1A1 LTR MaLR 1 365 0 4490 173 50 91 chr4 124023539 124025025 -60263637 - L1MC3 LINE L1 -863 5283 4964 691 259 113 5 chr4 124025045 124025257 -60263405 + L1ME LINE L1 5528 5762 -408 1389 203 91 18 chr4 124025261 124025646 -60263016 + L1M4 LINE L1 4459 4871 -1275 641 77 0 0 chr4 124025648 124025739 -60262923 - AluS SINE Alu -221 91 1 235 352 75 19 chr4 124025758 124026079 -60262583 - HAL1 LINE L1 -899 1608 1270 382 300 95 48 chr4 124026089 124026362 -60262300 - L1MEd LINE L1 -4968 1151 866 1817 139 29 0 chr4 124026442 124026716 -60261946 + AluJb SINE Alu 17 298 -14 225 179 18 54 chr4 124027708 124027764 -60260898 - MLT1J LTR MaLR -170 341 288 1411 179 151 23 chr4 124027902 124028253 -60260409 + MSTD LTR MaLR 1 396 0 359 297 9 9 chr4 124028254 124028365 -60260297 + MER110 LTR ERV1 58 168 -323 34855 75 5 8 chr4 124028366 124033975 -60254687 - L1PA6 LINE L1 0 6154 565 2176 101 0 0 chr4 124033978 124034256 -60254406 - AluY SINE Alu -33 278 1 860 313 49 0 chr4 124034256 124034560 -60254102 + MER110 LTR ERV1 164 482 -9 219 216 59 0 chr4 124035210 124035261 -60253401 + (CATG)n Simple_repeat Simple_repeat 3 56 0 307 192 26 51 chr4 124036201 124036279 -60252383 - MLT1J LTR MaLR -58 453 378 1980 146 0 16 chr4 124036389 124036697 -60251965 - AluJb SINE Alu -7 305 3 1039 185 0 0 chr4 124036762 124036935 -60251727 + MER54A LTR ERVL 1 173 -728 2982 173 45 28 chr4 124036935 124037234 -60251428 - LTR39 LTR ERV1 0 783 491 2254 98 0 0 chr4 124037234 124037531 -60251131 + AluSg SINE Alu 5 301 -9 2982 173 45 28 chr4 124037531 124037808 -60250854 - LTR39 LTR ERV1 -292 491 197 886 318 122 21 chr4 124039289 124039846 -60248816 + L2 LINE L2 2255 2867 -447 1407 35 0 0 chr4 124040747 124040917 -60247745 + L1HS LINE L1 5811 5980 -175 426 18 0 0 chr4 124040917 124040971 -60247691 + L1PA2 LINE L1 6096 6152 -3 508 271 84 12 chr4 124041005 124041171 -60247491 + MER5B DNA MER1_type 1 178 0 22 0 0 0 chr4 124043155 124043177 -60245485 + AT_rich Low_complexity Low_complexity 1 22 0 2255 65 0 4 chr4 124043481 124043785 -60244877 - AluY SINE Alu 0 309 7 26 30 0 0 chr4 124043968 124044001 -60244661 + AT_rich Low_complexity Low_complexity 1 33 0 228 213 47 27 chr4 124044007 124044157 -60244505 + (TA)n Simple_repeat Simple_repeat 1 153 0 10452 28 0 0 chr4 124044781 124046473 -60242189 - L1PA3 LINE L1 -317 5838 4147 2377 28 3 0 chr4 124046473 124046754 -60241908 + L1PA3 LINE L1 5872 6155 0 253 318 27 0 chr4 124046818 124046928 -60241734 - MER94 DNA DNA -6 128 16 5354 152 20 12 chr4 124047484 124048398 -60240264 + MER49 LTR ERV1 3 923 0 757 302 127 24 chr4 124048952 124049415 -60239247 + LTR33 LTR ERVL 11 521 0 288 237 0 54 chr4 124049841 124049934 -60238728 - MLT1L LTR MaLR -103 512 425 2511 48 0 6 chr4 124050137 124050449 -60238213 + AluY SINE Alu 1 310 -1 2483 136 49 0 chr4 124050768 124051174 -60237488 + MSTB LTR MaLR 1 426 0 3263 229 61 113 chr4 124052957 124054396 -60234266 + MLT1A1-int LTR MaLR 1 1365 -6 1499 184 42 36 chr4 124054405 124054764 -60233898 + MLT1A1 LTR MaLR 5 365 0 1034 227 70 44 chr4 124054815 124055203 -60233459 - L1M LINE L1 -821 5325 4946 * 1271 227 26 21 chr4 124055189 124055573 -60233089 - L1M4 LINE L1 -1307 4839 4454 365 282 41 58 chr4 124055890 124056252 -60232410 + L1MEd LINE L1 900 1255 -4864 415 275 54 101 chr4 124056640 124056716 -60231946 + L1MEd LINE L1 2236 2314 -3815 7454 30 7 1 chr4 124056716 124057639 -60231023 + L1PA4 LINE L1 5228 6155 0 415 275 54 101 chr4 124057639 124057750 -60230912 + L1MEd LINE L1 2314 2408 -3721 1490 221 0 3 chr4 124057750 124058044 -60230618 - AluJb SINE Alu -8 304 12 415 275 54 101 chr4 124058044 124058131 -60230531 + L1MEd LINE L1 2408 2498 -3631 22 56 0 0 chr4 124058361 124058397 -60230265 + AT_rich Low_complexity Low_complexity 1 36 0 2243 119 0 0 chr4 124059185 124059487 -60229175 + AluSg SINE Alu 1 302 -8 309 336 154 37 chr4 124059656 124059980 -60228682 + L2 LINE L2 2911 3272 0 246 277 40 40 chr4 124059995 124060096 -60228566 + MIR3 SINE MIR 98 198 -10 2127 99 7 14 chr4 124061852 124062146 -60226516 + AluSp SINE Alu 4 295 -18 251 382 51 19 chr4 124062728 124062885 -60225777 - MIR3 SINE MIR -15 193 32 180 146 73 0 chr4 124063009 124063050 -60225612 - L2 LINE L2 -2 3311 3268 2172 94 0 3 chr4 124063538 124063826 -60224836 - AluSx SINE Alu -13 299 13 242 315 64 30 chr4 124064340 124064543 -60224119 + L2 LINE L2 2947 3156 -157 252 236 0 0 chr4 124064543 124064598 -60224064 + (TGAA)n Simple_repeat Simple_repeat 2 56 0 774 176 12 18 chr4 124064718 124064883 -60223779 - L1MA5 LINE L1 0 6300 6137 521 185 281 14 chr4 124066117 124066263 -60222399 - MER5A DNA MER1_type -1 188 4 577 206 35 14 chr4 124067556 124067697 -60220965 + L1ME1 LINE L1 4965 5108 -1038 1143 231 31 31 chr4 124067706 124068027 -60220635 + L1ME1 LINE L1 5841 6161 -5 40 49 0 0 chr4 124068095 124068156 -60220506 + AT_rich Low_complexity Low_complexity 1 61 0 1945 129 7 0 chr4 124068639 124068919 -60219743 + AluSx SINE Alu 1 282 -30 294 143 0 0 chr4 124069492 124069541 -60219121 + (TG)n Simple_repeat Simple_repeat 2 50 0 267 275 20 13 chr4 124069676 124069690 -60218972 + (TA)n Simple_repeat Simple_repeat 1 13 -137 2036 139 3 0 chr4 124069690 124069978 -60218684 + AluSp SINE Alu 1 289 -24 267 275 20 13 chr4 124069978 124070112 -60218550 + (TA)n Simple_repeat Simple_repeat 13 150 0 1675 230 94 72 chr4 124070113 124070644 -60218018 + MLT1E LTR MaLR 51 593 0 613 253 22 28 chr4 124070645 124070827 -60217835 + MLT1E-int LTR MaLR 2 182 -1189 356 191 51 64 chr4 124070847 124071004 -60217658 - L1MEc LINE L1 -3234 2981 2827 957 307 108 33 chr4 124071061 124072090 -60216572 - L1MEc LINE L1 -5254 1142 37 212 258 202 11 chr4 124072127 124072216 -60216446 - MIR SINE MIR -146 116 11 253 379 34 38 chr4 124072251 124072486 -60216176 - L2 LINE L2 -431 2883 2650 333 0 0 0 chr4 124073130 124073167 -60215495 + (CA)n Simple_repeat Simple_repeat 2 38 0 6940 224 15 40 chr4 124073876 124075773 -60212889 + L1MA9 LINE L1 3464 5302 -2263 1926 150 7 0 chr4 124075773 124076067 -60212595 + AluSx SINE Alu 4 299 -13 6940 224 15 40 chr4 124076067 124076278 -60212384 + L1MA9 LINE L1 5302 5517 -2048 637 230 14 14 chr4 124076278 124076417 -60212245 - BC200 scRNA scRNA -61 139 1 5966 173 41 23 chr4 124076419 124076662 -60212000 + L1MA9 LINE L1 5505 5742 -1989 1932 151 18 0 chr4 124076662 124076946 -60211716 + AluSx SINE Alu 1 289 -23 5966 173 41 23 chr4 124076946 124078793 -60209869 + L1MA9 LINE L1 5742 7626 -105 2557 228 13 25 chr4 124078791 124079578 -60209084 - L1 LINE L1 -1269 4877 4132 * 641 251 155 0 chr4 124079617 124079804 -60208858 + MER58A DNA MER1_type 6 221 -3 21 0 0 0 chr4 124080738 124080759 -60207903 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 124081182 124081203 -60207459 + AT_rich Low_complexity Low_complexity 1 21 0 1268 185 35 123 chr4 124085019 124085419 -60203243 + MLT1A1 LTR MaLR 1 365 0 1445 99 7 99 chr4 124085483 124085635 -60203027 + L1PA8 LINE L1 5917 6081 -91 1842 134 3 56 chr4 124085635 124085940 -60202722 + AluSq SINE Alu 1 289 -24 188 83 0 28 chr4 124085946 124085982 -60202680 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1445 99 7 99 chr4 124085982 124086095 -60202567 + L1PA8 LINE L1 6086 6164 -8 21 57 0 0 chr4 124086095 124086130 -60202532 + AT_rich Low_complexity Low_complexity 1 35 0 233 191 43 0 chr4 124086522 124086569 -60202093 + GA-rich Low_complexity Low_complexity 5 53 0 265 250 186 32 chr4 124089037 124089193 -60199469 - MIR SINE MIR -25 237 58 881 115 27 34 chr4 124089196 124089344 -60199318 - LTR54B LTR ERV1 -344 154 8 782 226 16 11 chr4 124089837 124090023 -60198639 + MER5A DNA MER1_type 3 189 0 220 236 0 18 chr4 124090629 124090684 -60197978 + (TATATG)n Simple_repeat Simple_repeat 5 58 0 396 351 5 40 chr4 124090691 124090893 -60197769 - MIR SINE MIR -66 196 2 192 262 0 0 chr4 124091482 124091524 -60197138 - MIR SINE MIR -111 97 56 2250 77 0 20 chr4 124091892 124092192 -60196470 + AluSc SINE Alu 1 294 -15 30 27 0 0 chr4 124093122 124093159 -60195503 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr4 124093835 124093857 -60194805 + AT_rich Low_complexity Low_complexity 1 22 0 1275 243 31 76 chr4 124093999 124094510 -60194152 - L1ME1 LINE L1 -130 6036 5549 189 340 170 7 chr4 124095200 124095341 -60193321 + MIR SINE MIR 73 236 -26 21 0 0 0 chr4 124096113 124096134 -60192528 + AT_rich Low_complexity Low_complexity 1 21 0 498 233 178 6 chr4 124096255 124096418 -60192244 + MIR SINE MIR 9 199 -63 207 0 0 0 chr4 124097209 124097232 -60191430 + (TG)n Simple_repeat Simple_repeat 2 24 0 1014 86 13 7 chr4 124097670 124097821 -60190841 - AluY SINE Alu -5 306 155 3986 112 207 124 chr4 124097864 124099151 -60189511 + pTR5 LTR ERV1 741 2438 0 2293 81 0 10 chr4 124099547 124099844 -60188818 - AluY SINE Alu -17 294 1 240 333 106 22 chr4 124100914 124101094 -60187568 + L2 LINE L2 2835 3029 -243 24 0 0 0 chr4 124101200 124101224 -60187438 + AT_rich Low_complexity Low_complexity 1 24 0 233 290 90 10 chr4 124101377 124101477 -60187185 + L2 LINE L2 3203 3310 -3 28 29 0 0 chr4 124101552 124101587 -60187075 + AT_rich Low_complexity Low_complexity 1 35 0 271 279 135 10 chr4 124102078 124102182 -60186480 - MIR SINE MIR -143 119 3 24 53 0 0 chr4 124104070 124104108 -60184554 + AT_rich Low_complexity Low_complexity 1 38 0 671 276 5 46 chr4 124104204 124104400 -60184262 + MER63A DNA MER1_type 23 210 0 1380 236 66 13 chr4 124105767 124106224 -60182438 + L1ME2 LINE L1 4746 5226 -920 2370 256 36 54 chr4 124106245 124107148 -60181514 + L1ME2 LINE L1 5270 6156 -8 271 401 67 25 chr4 124107169 124107496 -60181166 + L2 LINE L2 2235 2575 -739 349 321 34 34 chr4 124107634 124107913 -60180749 + Charlie8 DNA MER1_type 1 284 -2133 189 0 0 0 chr4 124108231 124108252 -60180410 + (TA)n Simple_repeat Simple_repeat 1 21 0 26 0 0 0 chr4 124108593 124108619 -60180043 + AT_rich Low_complexity Low_complexity 1 26 0 209 125 28 42 chr4 124109495 124109567 -60179095 + CT-rich Low_complexity Low_complexity 4 74 0 941 301 128 13 chr4 124109567 124110029 -60178633 + LTR67 LTR ERVL 35 549 -8 1561 203 7 16 chr4 124110179 124110484 -60178178 - AluJo SINE Alu -8 304 3 225 283 0 0 chr4 124111005 124111058 -60177604 + (TATATG)n Simple_repeat Simple_repeat 1 53 0 1092 236 48 20 chr4 124111113 124111469 -60177193 + Charlie5 DNA MER1_type 1 366 -2246 393 254 45 9 chr4 124111770 124111880 -60176782 - LTR67 LTR ERVL -8 549 436 * 1074 281 75 27 chr4 124111871 124112244 -60176418 - LTR40a LTR ERVL -104 415 25 3791 197 47 16 chr4 124112272 124113265 -60175397 + Charlie5 DNA MER1_type 367 1390 -1222 1021 240 0 0 chr4 124113265 124113465 -60175197 + AluJo SINE Alu 3 202 -110 260 130 0 0 chr4 124113471 124113517 -60175145 - L1M4 LINE L1 -1427 4719 4674 1437 204 15 52 chr4 124113520 124113848 -60174814 - MLT2B3 LTR ERVL -4 550 235 707 175 21 21 chr4 124113848 124113991 -60174671 - L1MCa LINE L1 -6278 148 6 319 200 0 0 chr4 124113993 124114058 -60174604 + Charlie5 DNA MER1_type 2077 2141 -471 487 233 60 0 chr4 124114061 124114177 -60174485 - MLT1D LTR MaLR -3 502 380 13884 179 27 15 chr4 124114177 124117284 -60171378 + L1MA3 LINE L1 3452 6598 -967 3266 122 90 2 chr4 124117285 124117860 -60170802 + L1MA3 LINE L1 7099 7724 0 505 181 167 10 chr4 124117870 124118074 -60170588 + Charlie5 DNA MER1_type 2345 2580 -32 180 359 92 14 chr4 124118931 124119073 -60169589 - L2 LINE L2 -559 2755 2603 38126 83 8 7 chr4 124120249 124126389 -60162273 + L1PA6 LINE L1 11 6153 -1 25 0 0 0 chr4 124126437 124126462 -60162200 + AT_rich Low_complexity Low_complexity 1 25 0 1547 160 97 0 chr4 124126539 124126808 -60161854 - AluJb SINE Alu -17 295 1 206 70 93 0 chr4 124126921 124126964 -60161698 + T-rich Low_complexity Low_complexity 5 51 0 14521 243 37 27 chr4 124126969 124133967 -60154695 - L1PA15 LINE L1 0 7603 1 26 50 0 0 chr4 124134351 124134391 -60154271 + AT_rich Low_complexity Low_complexity 1 40 0 30 0 0 0 chr4 124134732 124134762 -60153900 + AT_rich Low_complexity Low_complexity 1 30 0 877 233 102 26 chr4 124134916 124135406 -60153256 + L1ME3A LINE L1 2183 2709 -3437 1859 154 50 34 chr4 124135406 124135764 -60152898 - THE1B LTR MaLR 0 364 1 822 306 72 17 chr4 124135797 124136494 -60152168 + L1ME3A LINE L1 3081 3815 -2331 1545 240 88 10 chr4 124136495 124136883 -60151779 + LTR52 LTR ERVL 1 418 -3 2072 248 83 68 chr4 124136895 124138125 -60150537 + L1ME3A LINE L1 3821 5110 -1060 2027 126 0 3 chr4 124138125 124138458 -60150204 + AluSq SINE Alu 1 332 0 2072 248 83 68 chr4 124138458 124139536 -60149126 + L1ME3A LINE L1 5110 6170 0 676 330 86 46 chr4 124139577 124140183 -60148479 + L1ME3A LINE L1 4372 5001 -1145 12787 134 41 36 chr4 124140187 124141108 -60147554 - Tigger1 DNA MER2_type -3 2415 1500 2115 122 0 0 chr4 124141108 124141411 -60147251 - AluSc SINE Alu -6 303 1 12787 134 41 36 chr4 124141411 124142891 -60145771 - Tigger1 DNA MER2_type -918 1500 2 375 226 90 25 chr4 124143092 124143339 -60145323 + L1P5 LINE L1 5185 5452 -704 513 289 75 53 chr4 124143432 124143890 -60144772 + L1ME3A LINE L1 5470 5950 -214 225 340 138 0 chr4 124144037 124144196 -60144466 + HAL1 LINE L1 1626 1806 -701 235 234 16 16 chr4 124144341 124144405 -60144257 + GA-rich Low_complexity Low_complexity 2 65 0 561 259 153 25 chr4 124144405 124144772 -60143890 + HAL1 LINE L1 2012 2425 -82 328 327 112 67 chr4 124146659 124146939 -60141723 + L2 LINE L2 2312 2578 -736 1520 122 74 64 chr4 124146939 124147235 -60141427 - AluSx SINE Alu -13 299 1 328 327 112 67 chr4 124147235 124147319 -60141343 + L2 LINE L2 2578 2657 -657 1945 104 0 73 chr4 124147319 124147636 -60141026 - AluSg SINE Alu -16 294 1 328 327 112 67 chr4 124147636 124147796 -60140866 + L2 LINE L2 2657 2861 -453 256 323 10 30 chr4 124148110 124148209 -60140453 + L2 LINE L2 3217 3313 0 425 60 15 0 chr4 124148273 124148340 -60140322 + L1PB1 LINE L1 6068 6135 -16 396 0 0 0 chr4 124148494 124148538 -60140124 + (TA)n Simple_repeat Simple_repeat 1 44 0 241 242 66 33 chr4 124149271 124149362 -60139300 + MIR SINE MIR 106 199 -63 26191 29 0 0 chr4 124150463 124154389 -60134273 - L1PA3 LINE L1 0 6155 2229 418 341 42 52 chr4 124154883 124155191 -60133471 + LTR16A LTR ERVL 21 325 -125 439 233 67 7 chr4 124155271 124155421 -60133241 + L1MD2 LINE L1 4899 5057 -1089 3942 211 37 30 chr4 124155426 124156397 -60132265 + L1MD2 LINE L1 5380 6357 -2 371 283 36 12 chr4 124156516 124156682 -60131980 - L1ME3A LINE L1 -312 5858 5689 393 276 103 57 chr4 124156698 124156895 -60131767 - L1ME3A LINE L1 -2983 3163 2977 2125 129 7 3 chr4 124156895 124157204 -60131458 - AluSx SINE Alu -2 310 1 393 276 103 57 chr4 124157204 124157830 -60130832 - L1ME3A LINE L1 -3169 2977 2302 2312 197 34 0 chr4 124159471 124159939 -60128723 - L1MB8 LINE L1 -272 5906 5423 1046 201 21 93 chr4 124159951 124160075 -60128587 - L1MB8 LINE L1 -2265 3881 3750 1103 182 10 10 chr4 124160075 124160284 -60128378 - L1PB4 LINE L1 -7 6149 5941 1046 201 21 93 chr4 124160284 124160492 -60128170 - L1MB8 LINE L1 -2396 3750 3573 1262 176 16 8 chr4 124161024 124161274 -60127388 + L1MC2 LINE L1 6085 6336 -8 2016 235 70 6 chr4 124162040 124162584 -60126078 - L1MD3 LINE L1 -9 7986 7408 238 204 93 0 chr4 124162587 124162641 -60126021 - MLT1F1 LTR MaLR -437 130 72 22 56 0 0 chr4 124163064 124163100 -60125562 + AT_rich Low_complexity Low_complexity 1 36 0 663 245 106 22 chr4 124163730 124164150 -60124512 + MLT1D LTR MaLR 1 372 -18 1621 191 31 88 chr4 124164207 124164286 -60124376 + MLT1D LTR MaLR 3 85 -420 2340 117 18 44 chr4 124164286 124164671 -60123991 - THE1C LTR MaLR 0 375 1 1621 191 31 88 chr4 124164671 124165068 -60123594 + MLT1D LTR MaLR 85 452 -53 10275 22 0 0 chr4 124165068 124166274 -60122388 - L1PA2 LINE L1 -999 5147 3942 7728 18 1 0 chr4 124166274 124167261 -60121401 + L1PA2 LINE L1 5168 6155 0 253 236 28 0 chr4 124167266 124167338 -60121324 + MLT1B LTR MaLR 317 390 0 183 436 86 0 chr4 124167774 124167891 -60120771 + MIR3 SINE MIR 30 156 -52 23 54 0 0 chr4 124168524 124168561 -60120101 + AT_rich Low_complexity Low_complexity 1 37 0 357 24 0 0 chr4 124168871 124168913 -60119749 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 199 398 9 18 chr4 124171071 124171184 -60117478 - L2 LINE L2 -527 2787 2676 243 354 95 6 chr4 124171627 124171785 -60116877 - L2 LINE L2 0 3313 3142 1678 182 43 73 chr4 124172591 124172935 -60115727 + MLT1A1 LTR MaLR 1 388 -8 214 429 11 6 chr4 124173075 124173257 -60115405 - L2 LINE L2 -1978 1336 1154 849 240 5 26 chr4 124174823 124175015 -60113647 + MER5A DNA MER1_type 2 189 0 223 292 135 21 chr4 124175589 124175685 -60112977 + MIR3 SINE MIR 9 115 -93 333 258 77 19 chr4 124175801 124175956 -60112706 + MER103 DNA DNA 1 164 -2 270 0 0 0 chr4 124175969 124175999 -60112663 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 237 65 0 0 chr4 124176042 124176073 -60112589 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 249 83 0 0 chr4 124177186 124177222 -60111440 + MER39B LTR ERV1 1 36 -617 238 325 218 10 chr4 124177541 124177738 -60110924 - MIR SINE MIR -22 240 3 474 297 82 93 chr4 124177738 124178092 -60110570 + L1ME LINE L1 5016 5365 -781 826 101 14 95 chr4 124178120 124178268 -60110394 - BC200 scRNA scRNA -63 137 2 304 282 47 27 chr4 124178294 124178443 -60110219 + L1ME LINE L1 5524 5675 -446 3408 170 21 13 chr4 124179001 124179629 -60109033 + MER39 LTR ERV1 76 690 -17 359 255 10 10 chr4 124181648 124181746 -60106916 - MIR SINE MIR 0 262 165 220 320 40 20 chr4 124182455 124182555 -60106107 - L2 LINE L2 -220 3093 2992 530 265 11 66 chr4 124182818 124182999 -60105663 + MIR SINE MIR 15 185 -77 210 118 0 0 chr4 124183023 124183057 -60105605 + (TA)n Simple_repeat Simple_repeat 2 35 0 244 234 0 16 chr4 124183130 124183194 -60105468 + (TGAA)n Simple_repeat Simple_repeat 3 65 0 24 0 0 0 chr4 124183264 124183288 -60105374 + AT_rich Low_complexity Low_complexity 1 24 0 514 283 118 5 chr4 124184418 124184630 -60104032 - MIR SINE MIR -25 237 2 255 366 132 42 chr4 124184727 124185137 -60103525 + L2 LINE L2 2341 2787 -527 469 244 35 82 chr4 124185362 124185564 -60103098 - MLT1J2 LTR MaLR -204 205 16 353 345 93 32 chr4 124185643 124185956 -60102706 + L2 LINE L2 2949 3280 -33 283 266 16 57 chr4 124187318 124187442 -60101220 + MLT1L LTR MaLR 495 613 -2 387 178 31 132 chr4 124187922 124188051 -60100611 - MER69A DNA AcHobo -61 116 1 384 22 0 0 chr4 124188641 124188686 -60099976 + (CA)n Simple_repeat Simple_repeat 2 46 0 257 284 69 59 chr4 124189100 124189202 -60099460 + L2 LINE L2 3169 3271 -1 25 0 0 0 chr4 124189220 124189245 -60099417 + AT_rich Low_complexity Low_complexity 1 25 0 22 56 0 0 chr4 124189348 124189384 -60099278 + AT_rich Low_complexity Low_complexity 1 36 0 418 259 61 20 chr4 124189836 124189983 -60098679 + MIR SINE MIR 49 201 -61 1812 149 29 0 chr4 124190122 124190433 -60098229 + AluSx SINE Alu 1 319 0 551 239 33 22 chr4 124191320 124191500 -60097162 - MER105 DNA DNA -22 182 1 298 289 21 41 chr4 124191518 124191615 -60097047 + MER5A DNA MER1_type 12 106 -83 216 258 83 108 chr4 124191677 124191797 -60096865 + L2 LINE L2 3151 3267 -5 498 124 0 0 chr4 124192202 124192291 -60096371 + (CA)n Simple_repeat Simple_repeat 1 89 0 1577 200 62 21 chr4 124192504 124192939 -60095723 + MLT1C LTR MaLR 7 459 -8 299 303 200 11 chr4 124193288 124193473 -60095189 + L3 LINE CR1 1178 1397 -180 269 314 164 0 chr4 124193640 124193799 -60094863 + MIR SINE MIR 30 214 -48 288 0 0 0 chr4 124194635 124194667 -60093995 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1704 304 53 18 chr4 124196734 124197663 -60090999 - L2 LINE L2 -3 3310 2343 333 0 0 0 chr4 124197795 124197832 -60090830 + (TTTTA)n Simple_repeat Simple_repeat 2 38 0 212 222 128 94 chr4 124198032 124198149 -60090513 + MIR SINE MIR 85 205 -57 11921 187 41 35 chr4 124198304 124200143 -60088519 - L1MA4A LINE L1 -5 7000 5173 288 0 0 0 chr4 124200143 124200175 -60088487 + (TC)n Simple_repeat Simple_repeat 2 33 0 * 333 0 0 0 chr4 124200174 124200211 -60088451 + (TG)n Simple_repeat Simple_repeat 2 38 0 11921 187 41 35 chr4 124200175 124204729 -60083933 - L1MA4A LINE L1 -1832 5173 647 2692 99 3 0 chr4 124204729 124205092 -60083570 - THE1B LTR MaLR 0 364 1 10896 108 10 28 chr4 124205096 124206700 -60081962 - THE1B-int LTR MaLR -4 1576 2 2391 134 0 27 chr4 124206701 124207075 -60081587 - THE1B LTR MaLR 0 364 1 11921 187 41 35 chr4 124207075 124207670 -60080992 - L1MA4A LINE L1 -6359 646 1 333 0 0 0 chr4 124208162 124208199 -60080463 + (TG)n Simple_repeat Simple_repeat 1 37 0 287 127 0 18 chr4 124208684 124208739 -60079923 + (TC)n Simple_repeat Simple_repeat 2 55 0 185 0 40 0 chr4 124209263 124209288 -60079374 + (TA)n Simple_repeat Simple_repeat 1 26 0 298 385 19 13 chr4 124209576 124209732 -60078930 - MIR3 SINE MIR -1 207 51 239 367 67 25 chr4 124210545 124210665 -60077997 + MIR3 SINE MIR 6 130 -78 333 140 0 0 chr4 124210774 124210831 -60077831 + (TA)n Simple_repeat Simple_repeat 2 58 0 26 0 0 0 chr4 124211484 124211510 -60077152 + AT_rich Low_complexity Low_complexity 1 26 0 2014 140 112 23 chr4 124211524 124211688 -60076974 + MSTA LTR MaLR 1 149 -279 2239 123 3 0 chr4 124211688 124211989 -60076673 + AluSx SINE Alu 1 302 -10 2014 140 112 23 chr4 124211989 124212217 -60076445 + MSTA LTR MaLR 149 428 0 251 309 88 0 chr4 124212236 124212363 -60076299 - MIR SINE MIR -50 212 76 238 335 19 38 chr4 124212384 124212452 -60076210 + Charlie2 DNA MER1_type 1 69 -2793 2180 133 82 25 chr4 124212452 124212857 -60075805 - MSTA LTR MaLR 0 428 1 238 335 19 38 chr4 124212857 124212946 -60075716 + Charlie2 DNA MER1_type 69 155 -2707 370 261 159 24 chr4 124213406 124213613 -60075049 + MIR SINE MIR 28 262 0 195 196 176 0 chr4 124213921 124213972 -60074690 + MIR3 SINE MIR 108 167 -41 270 353 35 0 chr4 124214011 124214127 -60074535 + MIR SINE MIR 66 185 -77 1152 230 83 18 chr4 124214186 124214525 -60074137 - MLT1C LTR MaLR -1 466 106 2732 141 81 2 chr4 124214526 124215007 -60073655 - Tigger3b DNA MER2_type -711 520 2 244 328 20 25 chr4 124215427 124215531 -60073131 - MIR SINE MIR -54 154 51 23 110 0 0 chr4 124217160 124217260 -60071402 + AT_rich Low_complexity Low_complexity 1 100 0 207 175 0 0 chr4 124217729 124217769 -60070893 + (CA)n Simple_repeat Simple_repeat 1 40 0 338 327 45 0 chr4 124217923 124218033 -60070629 + L2 LINE L2 3199 3313 0 227 191 21 0 chr4 124219396 124219443 -60069219 + GA-rich Low_complexity Low_complexity 2 49 0 219 69 0 0 chr4 124219647 124219676 -60068986 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 4445 73 16 5 chr4 124220280 124221289 -60067373 + MER11A LTR ERVK 1 1259 -7 281 109 146 2 chr4 124221305 124221359 -60067303 - AluSp SINE Alu -119 184 130 237 56 0 0 chr4 124222483 124222519 -60066143 - MER11B LTR ERVK -1200 36 1 1675 25 5 0 chr4 124222895 124223094 -60065568 + L1PA4 LINE L1 5950 6149 -6 1021 245 110 6 chr4 124223318 124223653 -60065009 + MER69 DNA AcHobo 45 414 -812 802 222 76 19 chr4 124223687 124224193 -60064469 + MER69 DNA AcHobo 1957 2526 0 208 143 0 0 chr4 124225788 124225823 -60062839 + (T)n Simple_repeat Simple_repeat 1 35 0 2152 127 3 0 chr4 124227267 124227574 -60061088 - AluSq SINE Alu -5 308 1 1114 87 6 22 chr4 124228957 124229024 -60059638 + (TTCC)n Simple_repeat Simple_repeat 1 245 0 1114 87 6 22 chr4 124229024 124229207 -60059455 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 27 0 0 0 chr4 124229370 124229397 -60059265 + AT_rich Low_complexity Low_complexity 1 27 0 3148 87 23 9 chr4 124229703 124230141 -60058521 + MLT2A1 LTR ERVL 1 444 0 11561 76 2 8 chr4 124230141 124231725 -60056937 + HERVL-A1 LTR ERVL 1 1575 -4079 * 22557 76 4 3 chr4 124231722 124234730 -60053932 + HERVL-A1 LTR ERVL 1788 4797 -857 3716 95 15 4 chr4 124234721 124235270 -60053392 + HERVL-A1 LTR ERVL 5100 5654 0 * 2913 83 62 9 chr4 124235270 124235692 -60052970 + MLT2A1 LTR ERVL 1 444 0 22 0 0 0 chr4 124235841 124235863 -60052799 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr4 124237116 124237136 -60051526 + (A)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr4 124237464 124237487 -60051175 + AT_rich Low_complexity Low_complexity 1 23 0 642 137 24 8 chr4 124237669 124237793 -60050869 - L1MA7 LINE L1 0 6291 6166 616 252 174 23 chr4 124238297 124238515 -60050147 - MIR SINE MIR -10 252 2 1827 186 0 6 chr4 124238633 124238945 -60049717 - AluJb SINE Alu -1 311 2 197 348 45 34 chr4 124238991 124239080 -60049582 - L2 LINE L2 -42 3230 3141 223 351 21 0 chr4 124239459 124239553 -60049109 + MIR SINE MIR 25 120 -142 2190 104 3 0 chr4 124240703 124241000 -60047662 + AluSp SINE Alu 1 298 -15 228 271 125 10 chr4 124241002 124241098 -60047564 + MIR SINE MIR 79 185 -77 226 312 92 21 chr4 124241329 124241470 -60047192 + L2 LINE L2 3122 3272 0 34 0 0 0 chr4 124244094 124244128 -60044534 + AT_rich Low_complexity Low_complexity 1 34 0 321 315 50 0 chr4 124244192 124244373 -60044289 + L1ME LINE L1 5549 5738 -383 186 269 194 46 chr4 124245439 124245547 -60043115 + L2 LINE L2 3188 3311 -2 301 305 75 78 chr4 124245717 124246012 -60042650 + MLT1J LTR MaLR 215 508 -3 22 56 0 0 chr4 124246073 124246109 -60042553 + AT_rich Low_complexity Low_complexity 1 36 0 332 153 0 14 chr4 124247064 124247136 -60041526 + GA-rich Low_complexity Low_complexity 3 73 0 831 242 34 6 chr4 124247745 124247923 -60040739 - MER5A DNA MER1_type -6 183 1 2430 187 47 13 chr4 124247985 124248368 -60040294 + L1MA10 LINE L1 5769 6177 -157 186 43 0 0 chr4 124248368 124248391 -60040271 + (TAA)n Simple_repeat Simple_repeat 2 24 0 2430 187 47 13 chr4 124248391 124248542 -60040120 + L1MA10 LINE L1 6177 6321 -13 592 340 121 36 chr4 124248620 124249032 -60039630 + L2 LINE L2 2826 3272 0 1590 179 32 0 chr4 124249288 124249568 -60039094 + AluJb SINE Alu 1 289 -23 1286 77 0 6 chr4 124249571 124249752 -60038910 + (GAA)n Simple_repeat Simple_repeat 1 180 0 183 80 0 0 chr4 124249754 124249779 -60038883 + (AGGGGG)n Simple_repeat Simple_repeat 2 26 0 2338 64 3 10 chr4 124251619 124251931 -60036731 + AluY SINE Alu 1 310 -1 26 30 0 0 chr4 124253253 124253286 -60035376 + AT_rich Low_complexity Low_complexity 1 33 0 337 330 30 21 chr4 124253555 124253791 -60034871 - L1ME LINE L1 -322 5799 5562 231 234 37 9 chr4 124254031 124254138 -60034524 - L1P5 LINE L1 -724 5430 5321 1341 59 0 32 chr4 124254457 124254667 -60033995 - AluY SINE Alu 0 307 104 513 278 28 17 chr4 124254782 124254962 -60033700 - L1MCa LINE L1 -5166 1260 1079 1773 178 0 3 chr4 124254962 124255271 -60033391 - AluSx SINE Alu -4 308 1 1182 170 6 127 chr4 124255279 124255470 -60033192 - AluJo SINE Alu -14 298 162 1864 159 0 7 chr4 124255470 124255771 -60032891 - AluSx SINE Alu -13 299 1 1182 170 6 127 chr4 124255771 124255909 -60032753 - AluJo SINE Alu -150 162 9 496 61 0 0 chr4 124256077 124256143 -60032519 - Alu SINE Alu -243 67 2 225 322 31 44 chr4 124256177 124256404 -60032258 - L1ME LINE L1 -1466 4680 4457 183 328 24 72 chr4 124257633 124257758 -60030904 - MIR3 SINE MIR -81 127 9 204 191 95 0 chr4 124258205 124258247 -60030415 + L2 LINE L2 3268 3313 0 702 241 154 5 chr4 124260384 124260579 -60028083 - MER58A DNA MER1_type 0 224 1 949 314 140 22 chr4 124261204 124261927 -60026735 + L2 LINE L2 990 1797 -1517 183 407 65 9 chr4 124262093 124262201 -60026461 + L2 LINE L2 3143 3256 -16 222 150 0 0 chr4 124262202 124262242 -60026420 + (GGAA)n Simple_repeat Simple_repeat 3 42 0 743 289 37 24 chr4 124263125 124263371 -60025291 + MIR SINE MIR 7 255 -7 182 288 119 0 chr4 124263510 124263569 -60025093 + L2 LINE L2 3237 3302 -11 850 328 62 52 chr4 124263920 124264518 -60024144 - L3 LINE CR1 -1 1576 973 455 293 58 11 chr4 124264523 124264697 -60023965 - MER58A DNA MER1_type -4 220 39 787 334 143 21 chr4 124264727 124265209 -60023453 - L3 LINE CR1 -634 943 403 248 357 179 9 chr4 124265323 124265547 -60023115 + L3 LINE CR1 1312 1573 -4 2896 240 42 59 chr4 124267067 124268006 -60020656 + L1MB7 LINE L1 1 923 -5619 1785 225 151 24 chr4 124268011 124268485 -60020177 + MER50 LTR ERV1 10 583 -151 249 33 0 0 chr4 124268485 124268515 -60020147 + (TTTCC)n Simple_repeat Simple_repeat 2 31 0 1785 225 151 24 chr4 124268515 124268663 -60019999 + MER50 LTR ERV1 583 711 -23 1203 209 73 11 chr4 124268675 124269030 -60019632 + L1MB7 LINE L1 930 1306 -5236 455 247 48 6 chr4 124269104 124269270 -60019392 - L1ME LINE L1 -2646 3500 3328 * 6287 212 33 44 chr4 124269268 124271985 -60016677 + L1MB7 LINE L1 3988 6666 -16 339 167 51 39 chr4 124272291 124272369 -60016293 + MLT1K LTR MaLR 509 587 -1 21 0 0 0 chr4 124272847 124272868 -60015794 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 124273056 124273085 -60015577 + AT_rich Low_complexity Low_complexity 1 29 0 1895 139 4 0 chr4 124273420 124273736 -60014926 - AluSx SINE Alu 0 317 1 198 174 0 0 chr4 124273830 124273876 -60014786 + GA-rich Low_complexity Low_complexity 1 46 0 642 261 65 16 chr4 124275643 124275827 -60012835 + LTR16A1 LTR ERVL 6 198 -259 540 204 49 68 chr4 124275878 124276040 -60012622 + LTR16A1 LTR ERVL 287 445 -12 501 273 76 5 chr4 124277017 124277215 -60011447 + L1ME LINE L1 5508 5719 -402 464 406 38 9 chr4 124277697 124278012 -60010650 - L2 LINE L2 -353 2961 2638 210 363 108 19 chr4 124278712 124278869 -60009793 - MIR SINE MIR -22 240 70 255 322 0 129 chr4 124278958 124279129 -60009533 + L2 LINE L2 3042 3190 -82 62 44 0 0 chr4 124279149 124279239 -60009423 + AT_rich Low_complexity Low_complexity 1 90 0 252 59 0 0 chr4 124281034 124281068 -60007594 + (CA)n Simple_repeat Simple_repeat 2 35 0 1750 123 85 31 chr4 124281479 124281797 -60006865 - LTR10A LTR ERV1 -61 548 214 318 216 125 11 chr4 124281819 124281907 -60006755 - LTR10A LTR ERV1 -511 98 1 195 224 12 0 chr4 124282150 124282206 -60006456 + MIR SINE MIR 98 153 -109 29 90 0 0 chr4 124282221 124282299 -60006363 + AT_rich Low_complexity Low_complexity 1 78 0 4603 125 50 5 chr4 124282393 124283139 -60005523 + MER4E LTR ERV1 1 779 0 225 0 0 0 chr4 124284211 124284236 -60004426 + (TC)n Simple_repeat Simple_repeat 2 26 0 1689 169 3 10 chr4 124284236 124284531 -60004131 - AluJb SINE Alu -19 293 1 369 43 0 0 chr4 124284554 124284601 -60004061 + (CA)n Simple_repeat Simple_repeat 2 48 0 3907 157 78 7 chr4 124285057 124285826 -60002836 + LTR1B LTR ERV1 3 826 0 312 331 143 0 chr4 124287439 124287572 -60001090 - MIR SINE MIR -65 197 46 318 250 10 29 chr4 124287729 124287833 -60000829 + MER94 DNA DNA 1 102 -32 47 19 0 0 chr4 124287933 124287987 -60000675 + AT_rich Low_complexity Low_complexity 1 54 0 199 301 140 21 chr4 124288011 124288154 -60000508 - MIR SINE MIR -56 206 47 483 325 121 55 chr4 124288497 124289224 -59999438 + HAL1 LINE L1 825 1599 -908 338 283 65 71 chr4 124289310 124289494 -59999168 - MLT1J LTR MaLR -106 405 223 411 301 119 5 chr4 124290171 124290364 -59998298 + MIR SINE MIR 34 248 -14 530 263 137 43 chr4 124290913 124291191 -59997471 - L3 LINE CR1 -690 887 584 32 0 0 0 chr4 124292370 124292402 -59996260 + AT_rich Low_complexity Low_complexity 1 32 0 809 127 0 0 chr4 124292402 124292520 -59996142 - FLAM_C SINE Alu -14 119 2 237 333 11 11 chr4 124292560 124292650 -59996012 + MIR3 SINE MIR 110 199 -9 238 302 62 56 chr4 124292778 124292957 -59995705 - L2 LINE L2 -2 3311 3132 1757 203 28 0 chr4 124293221 124293585 -59995077 - L1MB1 LINE L1 -52 6116 5743 386 328 41 0 chr4 124293715 124293837 -59994825 - MIR SINE MIR -123 139 13 1213 216 12 39 chr4 124293950 124294204 -59994458 + AluJo SINE Alu 1 247 -65 400 206 11 22 chr4 124294772 124294864 -59993798 + LTR67 LTR ERVL 401 491 -66 648 266 162 0 chr4 124294870 124295092 -59993570 + MIR SINE MIR 1 258 -4 237 111 111 97 chr4 124295132 124295204 -59993458 - MIR SINE MIR -79 183 111 249 261 39 110 chr4 124296569 124296784 -59991878 - MIR SINE MIR -50 212 12 271 262 16 0 chr4 124296999 124297060 -59991602 + L2 LINE L2 3211 3272 0 279 54 0 0 chr4 124297308 124297345 -59991317 + (TC)n Simple_repeat Simple_repeat 2 38 0 282 29 0 0 chr4 124297345 124297380 -59991282 + (CA)n Simple_repeat Simple_repeat 1 35 0 1591 158 51 71 chr4 124297683 124298070 -59990592 + MSTB1 LTR MaLR 6 426 0 244 185 15 15 chr4 124298166 124298231 -59990431 + (TA)n Simple_repeat Simple_repeat 2 66 0 2069 177 30 22 chr4 124299367 124299769 -59988893 - MER45B DNA AcHobo -243 797 393 2196 253 38 22 chr4 124299791 124300468 -59988194 - L1MEc LINE L1 -5378 1018 331 1041 249 8 4 chr4 124300487 124300724 -59987938 - L1MEc LINE L1 -6122 274 37 222 226 11 118 chr4 124300939 124301032 -59987630 + MER5A DNA MER1_type 14 96 -93 982 278 48 14 chr4 124301032 124301230 -59987432 - MLT1A1 LTR MaLR 0 365 148 2162 77 0 4 chr4 124301230 124301504 -59987158 - AluY SINE Alu -38 273 1 982 278 48 14 chr4 124301504 124301658 -59987004 - MLT1A1 LTR MaLR -217 148 1 418 321 141 0 chr4 124301855 124302039 -59986623 + MIR SINE MIR 49 258 -4 458 311 48 56 chr4 124303279 124303530 -59985132 + MIR SINE MIR 4 252 -10 475 367 17 11 chr4 124303743 124303923 -59984739 + MIR SINE MIR 11 191 -71 1518 180 73 45 chr4 124303967 124304322 -59984340 - MLT1A1 LTR MaLR 0 365 1 810 148 16 0 chr4 124304428 124304556 -59984106 + FLAM_A SINE Alu 4 133 0 212 233 0 0 chr4 124305075 124305118 -59983544 - MIR SINE MIR -104 158 116 5583 200 52 21 chr4 124306491 124307902 -59980760 - Charlie1a DNA MER1_type 0 1455 1 36 53 0 0 chr4 124308078 124308135 -59980527 + AT_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr4 124308313 124308334 -59980328 + AT_rich Low_complexity Low_complexity 1 21 0 780 295 47 24 chr4 124308636 124308713 -59979949 - MIR SINE MIR 0 262 188 1650 152 113 12 chr4 124308713 124309041 -59979621 - MER46B DNA MER2_type 0 236 1 780 295 47 24 chr4 124309041 124309217 -59979445 - MIR SINE MIR -74 188 3 458 319 128 5 chr4 124309915 124310119 -59978543 + MIR SINE MIR 32 260 -2 205 358 28 18 chr4 124310534 124310643 -59978019 + L2 LINE L2 267 376 -2938 1593 56 9 5 chr4 124310886 124311101 -59977561 + AluY SINE Alu 92 307 -4 280 290 168 38 chr4 124311105 124311236 -59977426 - MIR SINE MIR -27 235 88 2811 237 62 25 chr4 124312824 124313835 -59974827 + L1ME1 LINE L1 5119 6164 -2 2528 52 0 3 chr4 124313981 124314288 -59974374 + AluY SINE Alu 1 306 -5 23 54 0 0 chr4 124314369 124314406 -59974256 + AT_rich Low_complexity Low_complexity 1 37 0 209 267 133 33 chr4 124314421 124314511 -59974151 + L3 LINE CR1 1377 1475 -102 25 31 0 0 chr4 124315093 124315125 -59973537 + AT_rich Low_complexity Low_complexity 1 32 0 192 97 0 0 chr4 124315267 124315298 -59973364 + (TC)n Simple_repeat Simple_repeat 2 32 0 1636 228 118 66 chr4 124315837 124316590 -59972072 - LTR50 LTR ERVL 0 795 4 437 317 134 39 chr4 124316773 124317183 -59971479 + HAL1 LINE L1 1093 1541 -966 4022 96 5 0 chr4 124318131 124318682 -59969980 + MER41A LTR ERV1 1 554 0 304 145 342 0 chr4 124318682 124318758 -59969904 + MER41A-int LTR ERV1 1 102 -5844 5792 122 137 4 chr4 124318767 124319743 -59968919 + MER41A-int LTR ERV1 1 3250 -4566 441 0 0 0 chr4 124319747 124319796 -59968866 + (TG)n Simple_repeat Simple_repeat 1 49 0 12455 114 20 25 chr4 124319800 124322743 -59965919 + MER41A-int LTR ERV1 1364 5944 -2 3351 92 83 17 chr4 124322743 124323262 -59965400 + MER41A LTR ERV1 1 553 -1 3029 159 19 82 chr4 124323284 124323952 -59964710 + LTR8 LTR ERV1 1 626 -65 180 77 0 0 chr4 124324093 124324119 -59964543 + (T)n Simple_repeat Simple_repeat 1 26 0 271 221 39 0 chr4 124324999 124325076 -59963586 + (TAAA)n Simple_repeat Simple_repeat 4 83 0 932 164 31 0 chr4 124325388 124325547 -59963115 - MER58B DNA MER1_type -1 340 177 783 291 170 17 chr4 124325808 124326486 -59962176 + L2 LINE L2 2480 3277 -36 26 0 0 0 chr4 124326489 124326515 -59962147 + AT_rich Low_complexity Low_complexity 1 26 0 375 98 0 0 chr4 124326647 124326708 -59961954 + (TG)n Simple_repeat Simple_repeat 2 62 0 1963 113 27 7 chr4 124326755 124327048 -59961614 + AluSx SINE Alu 1 299 -13 29 101 0 0 chr4 124327940 124328039 -59960623 + AT_rich Low_complexity Low_complexity 1 99 0 37 0 0 0 chr4 124328211 124328248 -59960414 + AT_rich Low_complexity Low_complexity 1 37 0 310 321 19 0 chr4 124329299 124329405 -59959257 + MLT1L LTR MaLR 169 276 -339 22 80 0 0 chr4 124331376 124331426 -59957236 + AT_rich Low_complexity Low_complexity 1 50 0 414 277 90 15 chr4 124331885 124332082 -59956580 + L1ME LINE L1 5325 5557 -564 222 204 0 20 chr4 124332287 124332336 -59956326 - L2 LINE L2 -1 3312 3265 28 22 0 22 chr4 124332384 124332404 -59956258 + AT_rich Low_complexity Low_complexity 1 20 -25 1677 97 0 0 chr4 124332404 124332630 -59956032 + AluSg/x SINE Alu 87 312 0 28 22 0 22 chr4 124332630 124332655 -59956007 + AT_rich Low_complexity Low_complexity 20 45 0 1671 164 34 108 chr4 124332674 124333262 -59955400 - MLT2A2 LTR ERVL 0 554 1 1929 182 4 1 chr4 124334214 124334586 -59954076 - L1MB3 LINE L1 -204 5962 5583 249 157 0 0 chr4 124334586 124334637 -59954025 + L1MB4 LINE L1 6130 6180 0 244 374 65 0 chr4 124334994 124335101 -59953561 + MIR SINE MIR 24 137 -71 * 283 350 66 15 chr4 124335095 124335232 -59953430 - L2 LINE L2 0 3272 3129 22 0 0 0 chr4 124335459 124335481 -59953181 + AT_rich Low_complexity Low_complexity 1 22 0 185 286 0 0 chr4 124336247 124336289 -59952373 - L2 LINE L2 -4 3309 3268 281 369 73 21 chr4 124336332 124336565 -59952097 - L2 LINE L2 -219 3053 2809 4208 155 41 8 chr4 124336596 124337593 -59951069 - L1MA5 LINE L1 -359 5941 4890 2041 75 0 0 chr4 124337593 124337859 -59950803 - L1PA8 LINE L1 0 6172 5907 4208 155 41 8 chr4 124337859 124338293 -59950369 - L1MA5 LINE L1 -1410 4890 4472 1636 180 30 3 chr4 124338293 124338631 -59950031 + L1MA5 LINE L1 5953 6300 0 188 289 0 0 chr4 124339040 124339085 -59949577 + L2 LINE L2 3264 3308 -5 299 284 60 26 chr4 124340013 124340129 -59948533 - MIR SINE MIR -21 241 122 280 330 105 29 chr4 124340316 124340525 -59948137 - MIR SINE MIR -6 256 32 1902 157 141 0 chr4 124340759 124341134 -59947528 - MSTA LTR MaLR 0 428 1 8407 157 8 36 chr4 124341174 124342639 -59946023 - MSTA-int LTR MaLR -154 1426 4 724 127 190 0 chr4 124342642 124342784 -59945878 - MSTA LTR MaLR 0 428 260 23432 152 15 26 chr4 124342784 124347879 -59940783 + L1P3 LINE L1 11 5103 -1358 2164 113 10 7 chr4 124347879 124348188 -59940474 + AluSp SINE Alu 1 310 -3 23432 152 15 26 chr4 124348188 124348456 -59940206 + L1P3 LINE L1 5103 5373 -1088 2680 87 3 5 chr4 124348556 124348924 -59939738 + L1PA8A LINE L1 5737 6103 -28 1415 139 116 12 chr4 124348963 124349221 -59939441 - MSTA LTR MaLR -143 285 1 449 149 19 65 chr4 124349639 124349746 -59938916 - MER20 DNA MER1_type 0 219 118 274 245 28 47 chr4 124349918 124350024 -59938638 + MER74A LTR ERVL 293 396 -162 512 231 33 16 chr4 124350146 124350267 -59938395 - MER20 DNA MER1_type -90 129 7 2047 93 82 25 chr4 124352054 124352407 -59936255 + THE1C LTR MaLR 3 375 0 3756 130 54 83 chr4 124352407 124353128 -59935534 + THE1C-int LTR MaLR 1 700 -880 922 281 106 27 chr4 124353139 124353893 -59934769 + L1ME1 LINE L1 2173 2946 -3269 920 241 23 36 chr4 124353902 124354209 -59934453 + L1ME1 LINE L1 3719 4021 -2194 214 259 0 0 chr4 124354233 124354250 -59934412 + (TA)n Simple_repeat Simple_repeat 1 17 -41 1768 186 86 29 chr4 124354250 124354659 -59934003 + MSTB1 LTR MaLR 1 432 0 214 259 0 0 chr4 124354659 124354699 -59933963 + (TA)n Simple_repeat Simple_repeat 16 58 0 2372 248 65 35 chr4 124354706 124355570 -59933092 + L1ME1 LINE L1 5338 6227 -8 235 331 89 8 chr4 124355675 124355799 -59932863 + L2 LINE L2 3167 3300 -13 201 196 0 0 chr4 124356568 124356614 -59932048 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 23 33 0 0 chr4 124356946 124356976 -59931686 + AT_rich Low_complexity Low_complexity 1 30 0 829 10 0 10 chr4 124357395 124357495 -59931167 + L1PA3 LINE L1 6057 6155 0 190 204 54 129 chr4 124357683 124357776 -59930886 + MIR SINE MIR 106 191 -71 198 289 16 91 chr4 124358019 124358044 -59930618 - MIR SINE MIR -136 126 101 2305 170 10 0 chr4 124358044 124358443 -59930219 + MER57A LTR ERV1 1 403 0 198 289 16 91 chr4 124358443 124358538 -59930124 - MIR SINE MIR -161 101 15 3896 206 22 16 chr4 124359567 124360454 -59928208 + L1MC3 LINE L1 6877 7769 -16 6317 85 13 9 chr4 124361452 124362778 -59925884 + L1PA10 LINE L1 4840 6166 -2 2809 126 19 5 chr4 124362871 124363299 -59925363 + MER57B LTR ERV1 1 434 0 467 290 65 37 chr4 124363393 124363610 -59925052 - MIR SINE MIR -27 235 13 30 59 0 0 chr4 124363621 124363672 -59924990 + AT_rich Low_complexity Low_complexity 1 51 0 338 302 69 6 chr4 124363813 124363972 -59924690 + L2 LINE L2 3115 3283 -30 966 269 117 61 chr4 124364138 124364195 -59924467 - MLT1H LTR MaLR 0 549 497 522 80 13 0 chr4 124364195 124364270 -59924392 + MADE1 DNA Mariner 3 78 -2 966 269 117 61 chr4 124364270 124364606 -59924056 - MLT1H LTR MaLR -52 497 134 590 131 10 20 chr4 124364649 124364748 -59923914 + MER4A LTR ERV1 1 98 -566 342 135 19 0 chr4 124364748 124364800 -59923862 + MER4A LTR ERV1 261 313 -351 1024 264 129 0 chr4 124364818 124365159 -59923503 - L2 LINE L2 -943 2371 1987 202 336 16 64 chr4 124365171 124365296 -59923366 - L3 LINE CR1 -555 1022 904 22 0 0 0 chr4 124365298 124365320 -59923342 + AT_rich Low_complexity Low_complexity 1 22 0 701 304 66 8 chr4 124365618 124365861 -59922801 - MIR SINE MIR 0 262 6 180 152 0 0 chr4 124366133 124366166 -59922496 + (CATA)n Simple_repeat Simple_repeat 3 35 0 1236 282 110 11 chr4 124367219 124367684 -59920978 - MLT1J LTR MaLR 0 511 1 238 200 20 0 chr4 124368154 124368204 -59920458 - MER65B LTR ERV1 0 531 481 378 296 43 70 chr4 124368311 124368497 -59920165 - MIR SINE MIR -62 200 20 189 311 115 0 chr4 124368589 124368650 -59920012 + MIR SINE MIR 39 106 -102 422 288 65 35 chr4 124368805 124368975 -59919687 + L3 LINE CR1 916 1090 -487 183 406 43 0 chr4 124370882 124371020 -59917642 - MIR3 SINE MIR -43 165 22 43762 43 3 2 chr4 124371296 124377444 -59911218 - L1PA4 LINE L1 -1 6154 2 2535 116 3 21 chr4 124377483 124377863 -59910799 + THE1C LTR MaLR 3 375 0 27 0 0 0 chr4 124380499 124380526 -59908136 + AT_rich Low_complexity Low_complexity 1 27 0 236 182 0 0 chr4 124381346 124381390 -59907272 - MER116 DNA Mariner -35 45 2 1564 196 72 21 chr4 124381539 124381916 -59906746 - MSTD LTR MaLR 0 396 1 6361 242 55 28 chr4 124381916 124383604 -59905058 - MSTD-int LTR MaLR 0 1735 2 1435 240 52 18 chr4 124383606 124383989 -59904673 - MSTD LTR MaLR 0 396 1 2221 170 13 60 chr4 124384512 124384965 -59903697 + MSTB1 LTR MaLR 1 432 0 306 298 117 40 chr4 124385915 124386199 -59902463 + MLT1H LTR MaLR 1 309 -286 32 0 0 0 chr4 124387256 124387288 -59901374 + AT_rich Low_complexity Low_complexity 1 32 0 2058 150 0 0 chr4 124387684 124387990 -59900672 - AluSx SINE Alu -6 306 1 4851 156 16 7 chr4 124389695 124390380 -59898282 - L1MB2 LINE L1 -3 6168 5473 180 77 0 0 chr4 124390380 124390406 -59898256 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 4851 156 16 7 chr4 124390406 124390559 -59898103 - L1MB2 LINE L1 -698 5473 5323 1921 116 220 11 chr4 124394716 124395070 -59893592 + MSTA LTR MaLR 1 428 0 198 0 0 0 chr4 124395264 124395286 -59893376 + (T)n Simple_repeat Simple_repeat 1 22 0 24 0 0 0 chr4 124395422 124395446 -59893216 + AT_rich Low_complexity Low_complexity 1 24 0 315 317 48 30 chr4 124395739 124395906 -59892756 + MIR SINE MIR 57 226 -36 4342 123 39 8 chr4 124396757 124397481 -59891181 + L1MA3 LINE L1 5454 6199 -106 261 0 0 0 chr4 124397661 124397690 -59890972 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1922 178 31 76 chr4 124398140 124398624 -59890038 + MER31B LTR ERV1 1 462 -4 532 264 168 5 chr4 124399316 124399524 -59889138 - MIR SINE MIR -6 256 15 548 226 23 106 chr4 124399940 124400157 -59888505 - L1MC4a LINE L1 -1867 5941 5743 240 190 89 0 chr4 124400161 124400240 -59888422 - Tigger6 DNA MER2_type -646 437 352 757 293 14 28 chr4 124400240 124400530 -59888132 - L1MC4a LINE L1 -2096 5712 5427 512 242 48 63 chr4 124400777 124400987 -59887675 + L1MD3 LINE L1 6100 7946 -49 191 200 0 91 chr4 124401486 124401541 -59887121 + MIR3 SINE MIR 115 164 -44 186 208 0 21 chr4 124401585 124401633 -59887029 + MER5B DNA MER1_type 132 178 0 251 184 41 0 chr4 124403167 124403216 -59885446 + LTR40b LTR ERVL 1 51 -411 1270 76 35 15 chr4 124403256 124403453 -59885209 + L1PA14 LINE L1 5960 6160 -1 488 108 29 0 chr4 124403464 124403470 -59885192 + (TA)n Simple_repeat Simple_repeat 1 5 -100 2349 75 0 33 chr4 124403470 124403777 -59884885 + AluY SINE Alu 2 298 -13 488 108 29 0 chr4 124403777 124403872 -59884790 + (TA)n Simple_repeat Simple_repeat 5 105 0 28 29 0 0 chr4 124403872 124403907 -59884755 + AT_rich Low_complexity Low_complexity 1 35 0 1532 264 40 17 chr4 124403917 124404337 -59884325 + LTR40a LTR ERVL 90 519 0 298 252 153 36 chr4 124404995 124405106 -59883556 - L2 LINE L2 0 3313 3190 191 389 130 0 chr4 124405153 124405261 -59883401 + L2 LINE L2 3192 3313 0 201 147 0 0 chr4 124405665 124405699 -59882963 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 664 197 31 0 chr4 124405700 124405827 -59882835 - FLAM_C SINE Alu -12 131 1 21 0 0 31 chr4 124405938 124405954 -59882708 + AT_rich Low_complexity Low_complexity 1 16 -15 2252 71 0 20 chr4 124405954 124406250 -59882412 - AluY SINE Alu -21 290 1 21 0 0 31 chr4 124406250 124406265 -59882397 + AT_rich Low_complexity Low_complexity 16 31 0 5103 128 105 24 chr4 124407624 124408637 -59880025 - Tigger3b DNA MER2_type -136 1095 1 368 244 8 61 chr4 124408737 124408868 -59879794 + MER103 DNA DNA 3 126 -40 669 171 8 0 chr4 124409771 124409888 -59878774 + FLAM_C SINE Alu 1 118 -15 198 0 0 0 chr4 124409891 124409913 -59878749 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 470 238 51 68 chr4 124409917 124410287 -59878375 + pTR5 LTR ERV1 738 1101 -1337 324 177 43 8 chr4 124410321 124410343 -59878319 + Alu SINE Alu 239 259 -43 3926 68 59 138 chr4 124410343 124411089 -59877573 + LTR12 LTR ERV1 1 687 -1 324 177 43 8 chr4 124411089 124411164 -59877498 + Alu SINE Alu 259 294 -8 23 0 0 0 chr4 124411198 124411221 -59877441 + AT_rich Low_complexity Low_complexity 1 23 0 667 298 20 20 chr4 124412041 124412239 -59876423 + MIR SINE MIR 1 198 -64 1885 154 58 25 chr4 124413279 124413642 -59875020 + THE1C LTR MaLR 1 375 0 1873 72 116 0 chr4 124413841 124414092 -59874570 - AluY SINE Alu -30 281 2 229 351 64 11 chr4 124414733 124414827 -59873835 + MIR SINE MIR 21 119 -143 2723 224 134 14 chr4 124414828 124415707 -59872955 + L1MD2 LINE L1 3931 4915 -1231 595 266 25 46 chr4 124415709 124415946 -59872716 + L1MD2 LINE L1 5255 5486 -680 1012 274 8 0 chr4 124415949 124416204 -59872458 + L1MC/D LINE L1 9 265 -6144 355 227 45 45 chr4 124416275 124416385 -59872277 + L1MC/D LINE L1 3344 3453 -2953 3615 236 83 42 chr4 124416397 124418386 -59870276 + L1MC/D LINE L1 3707 5854 -743 506 16 16 0 chr4 124418399 124418462 -59870200 + (TTCCC)n Simple_repeat Simple_repeat 1 64 0 1621 135 39 28 chr4 124418884 124419166 -59869496 - AluSx SINE Alu -27 285 1 716 151 40 24 chr4 124419221 124419347 -59869315 + FLAM_C SINE Alu 1 128 -5 937 201 45 0 chr4 124419360 124419559 -59869103 + L1MD2 LINE L1 5551 5758 -601 872 191 43 35 chr4 124419559 124419789 -59868873 - L1ME1 LINE L1 -189 5977 5746 * 2423 178 37 54 chr4 124419787 124420382 -59868280 + L1MD2 LINE L1 5774 6358 -1 2318 210 24 17 chr4 124420371 124420904 -59867758 + L1ME1 LINE L1 5469 6005 -161 * 488 90 39 13 chr4 124420904 124420982 -59867680 + MADE1 DNA Mariner 1 80 0 535 249 87 64 chr4 124421001 124421410 -59867252 + L1ME3A LINE L1 4485 4932 -1214 1833 258 117 29 chr4 124421421 124422450 -59866212 + L1ME3A LINE L1 5030 6157 -13 22 35 0 0 chr4 124422695 124422724 -59865938 + AT_rich Low_complexity Low_complexity 1 29 0 260 297 0 0 chr4 124422914 124422978 -59865684 - MER8 DNA MER2_type -65 174 111 * 408 161 11 13 chr4 124422970 124423058 -59865604 - MER2 DNA MER2_type -152 87 1 34 65 0 0 chr4 124423233 124423295 -59865367 + AT_rich Low_complexity Low_complexity 1 62 0 1023 227 101 31 chr4 124423382 124423699 -59864963 + MER2 DNA MER2_type 2 340 -5 22 56 0 0 chr4 124424751 124424787 -59863875 + AT_rich Low_complexity Low_complexity 1 36 0 237 108 0 0 chr4 124428306 124428343 -59860319 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 625 311 94 18 chr4 124428343 124428671 -59859991 - L2 LINE L2 -13 3300 2948 214 160 0 40 chr4 124432346 124432396 -59856266 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 22 0 0 0 chr4 124432667 124432689 -59855973 + AT_rich Low_complexity Low_complexity 1 22 0 307 332 144 27 chr4 124433097 124433245 -59855417 - L2 LINE L2 -590 2724 2595 216 67 0 0 chr4 124433245 124433275 -59855387 + (CAG)n Simple_repeat Simple_repeat 3 32 0 307 332 144 27 chr4 124433275 124433500 -59855162 - L2 LINE L2 -719 2595 2307 380 304 125 18 chr4 124434143 124434311 -59854351 - MIR SINE MIR -11 251 66 213 215 0 65 chr4 124434875 124434968 -59853694 + T-rich Low_complexity Low_complexity 4 90 0 227 204 19 0 chr4 124435233 124435287 -59853375 + L1ME LINE L1 5868 5922 -199 329 314 98 56 chr4 124435876 124436214 -59852448 + L1ME LINE L1 4481 4832 -1314 300 318 91 29 chr4 124436539 124436879 -59851783 + L1ME LINE L1 5280 5640 -481 588 256 84 32 chr4 124436965 124437269 -59851393 + L1ME2 LINE L1 5597 5908 -270 818 233 28 6 chr4 124437274 124437454 -59851208 - MIR SINE MIR -21 241 58 208 171 24 0 chr4 124438004 124438045 -59850617 + A-rich Low_complexity Low_complexity 3 44 0 247 232 85 49 chr4 124439303 124439385 -59849277 - L2 LINE L2 -2 3270 3186 410 309 125 59 chr4 124439663 124440000 -59848662 + L2 LINE L2 2869 3227 -45 333 355 35 0 chr4 124440697 124440866 -59847796 - L2 LINE L2 -523 2791 2617 643 259 134 10 chr4 124440926 124441127 -59847535 - MIR SINE MIR -8 254 29 256 173 19 19 chr4 124441133 124441185 -59847477 - MER81 DNA DNA -1 113 62 2428 263 84 16 chr4 124441404 124441803 -59846859 - L1M4 LINE L1 -3015 3131 2761 2440 29 0 0 chr4 124441803 124442080 -59846582 + AluYb8 SINE Alu 41 317 -1 2428 263 84 16 chr4 124442080 124442637 -59846025 - L1M4 LINE L1 -3385 2761 2110 337 282 45 0 chr4 124442641 124442751 -59845911 - L1MC/D LINE L1 -2118 5690 5576 231 226 71 0 chr4 124442776 124442860 -59845802 - L1MC4 LINE L1 -1339 6703 6614 1112 136 91 23 chr4 124443041 124443262 -59845400 - L1MA4 LINE L1 -16 6284 6049 404 147 0 0 chr4 124443435 124443503 -59845159 + AluS SINE Alu 232 299 -2 183 239 22 22 chr4 124444077 124444123 -59844539 + MER5B DNA MER1_type 62 107 -71 675 244 86 123 chr4 124444567 124445030 -59843632 + L2 LINE L2 2868 3313 0 23 68 0 0 chr4 124445465 124445509 -59843153 + AT_rich Low_complexity Low_complexity 1 44 0 669 149 21 14 chr4 124445604 124445745 -59842917 - L1MA8 LINE L1 -2 6289 6148 817 249 72 30 chr4 124446476 124446781 -59841881 + L1MCc LINE L1 1033 1350 -5073 * 2665 219 70 63 chr4 124446766 124448242 -59840420 + L1ME1 LINE L1 4670 6146 -20 461 332 78 92 chr4 124448551 124448973 -59839689 + L2 LINE L2 2857 3272 0 1895 207 77 45 chr4 124449091 124449583 -59839079 + MLT2B1 LTR ERVL 1 508 -12 208 196 22 0 chr4 124450779 124450825 -59837837 + GA-rich Low_complexity Low_complexity 4 50 0 2916 6 0 0 chr4 124450939 124451253 -59837409 + AluYb8 SINE Alu 1 314 -4 1760 137 38 67 chr4 124451599 124451971 -59836691 + MER46B DNA MER2_type 1 236 0 1633 195 28 25 chr4 124452230 124452594 -59836068 + MLT1A1 LTR MaLR 1 365 0 548 328 49 15 chr4 124452624 124452828 -59835834 - MIR SINE MIR -50 212 2 21 0 0 0 chr4 124453146 124453167 -59835495 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 124454749 124454777 -59833885 + AT_rich Low_complexity Low_complexity 1 28 0 519 274 98 40 chr4 124455700 124456376 -59832286 + L1MCc LINE L1 1515 2229 -4893 638 150 132 22 chr4 124456400 124456627 -59832035 + Charlie1 DNA MER1_type 2465 2716 -45 231 238 168 49 chr4 124456627 124456770 -59831892 + L2 LINE L2 2483 2642 -672 * 812 305 93 7 chr4 124456769 124457071 -59831591 - L2 LINE L2 -882 2432 2105 1153 220 17 55 chr4 124457071 124457477 -59831185 + MSTB2 LTR MaLR 1 456 -1 488 254 140 135 chr4 124457486 124458277 -59830385 - L2 LINE L2 -1234 2080 1286 870 256 10 0 chr4 124458279 124458474 -59830188 + Charlie1b DNA MER1_type 2 198 -325 715 228 41 5 chr4 124458480 124458699 -59829963 - L1M4 LINE L1 -1536 4610 4384 22 35 0 0 chr4 124459579 124459608 -59829054 + AT_rich Low_complexity Low_complexity 1 29 0 771 302 167 35 chr4 124459608 124460334 -59828328 - L2 LINE L2 0 3313 2444 256 154 77 110 chr4 124460373 124460464 -59828198 - MLT1H LTR MaLR 0 549 462 300 249 173 65 chr4 124460510 124460695 -59827967 - MLT1H LTR MaLR -245 304 100 2178 93 7 0 chr4 124460707 124460987 -59827675 - AluSp SINE Alu -27 286 5 605 157 139 0 chr4 124461425 124461540 -59827122 - FLAM_C SINE Alu -12 131 1 441 232 246 21 chr4 124462173 124462315 -59826347 - MER5A DNA MER1_type 0 189 16 246 352 11 0 chr4 124462525 124462613 -59826049 + L2 LINE L2 3225 3313 0 365 331 12 52 chr4 124463280 124463452 -59825210 - Charlie8 DNA MER1_type -2141 276 112 2223 100 0 0 chr4 124464541 124464854 -59823808 + AluY SINE Alu 1 313 0 416 253 50 0 chr4 124465862 124465961 -59822701 + L2 LINE L2 3192 3295 -18 2196 166 0 3 chr4 124466401 124466768 -59821894 - MER47A DNA MER2_type 0 366 1 399 41 0 0 chr4 124468414 124468463 -59820199 + (CA)n Simple_repeat Simple_repeat 2 50 0 970 185 40 0 chr4 124468464 124468637 -59820025 + MIR SINE MIR 53 232 -30 180 0 0 0 chr4 124468790 124468810 -59819852 + (CA)n Simple_repeat Simple_repeat 1 20 0 435 290 193 56 chr4 124472110 124472513 -59816149 + L1M2 LINE L1 444 931 -5918 243 0 0 0 chr4 124472513 124472540 -59816122 + (CCCCCG)n Simple_repeat Simple_repeat 3 29 0 435 290 193 56 chr4 124472540 124472639 -59816023 + L1M2 LINE L1 931 1015 -5834 1504 228 87 19 chr4 124474413 124474953 -59813709 + MER114 LTR ERV 1 577 -71 783 27 45 0 chr4 124475395 124475507 -59813155 + (TATATG)n Simple_repeat Simple_repeat 4 120 0 1563 159 96 0 chr4 124477374 124477645 -59811017 - AluJb SINE Alu -15 297 1 487 270 54 60 chr4 124477809 124478201 -59810461 + MLT1F LTR MaLR 1 417 -173 2438 65 0 23 chr4 124478574 124478884 -59809778 + AluY SINE Alu 1 303 -8 255 268 127 96 chr4 124479749 124479883 -59808779 - MLT1J LTR MaLR -68 443 315 390 270 9 17 chr4 124479883 124479998 -59808664 - MER81 DNA DNA 0 114 1 255 268 127 96 chr4 124479998 124480289 -59808373 - MLT1J LTR MaLR -196 315 5 36 19 0 19 chr4 124481340 124481377 -59807285 + AT_rich Low_complexity Low_complexity 1 38 -15 2089 115 3 11 chr4 124481377 124481664 -59806998 - AluSx SINE Alu -27 285 1 36 19 0 19 chr4 124481664 124481680 -59806982 + AT_rich Low_complexity Low_complexity 38 53 0 1153 189 41 14 chr4 124481875 124482134 -59806528 + MSTA LTR MaLR 1 268 -164 604 191 137 49 chr4 124482122 124482305 -59806357 - MLT1H LTR MaLR -286 263 65 * 1423 196 4 4 chr4 124482480 124482760 -59805902 + L1PB4 LINE L1 5877 6156 0 1952 210 29 157 chr4 124482760 124483645 -59805017 + MLT1-int LTR MaLR 280 1051 -320 224 312 113 43 chr4 124484318 124484459 -59804203 + L2 LINE L2 3122 3272 0 186 43 0 0 chr4 124486959 124486982 -59801680 + (T)n Simple_repeat Simple_repeat 1 23 0 208 360 80 32 chr4 124487160 124487285 -59801377 + L2 LINE L2 3142 3272 0 240 346 114 30 chr4 124487396 124487792 -59800870 + L2 LINE L2 2368 2796 -518 22 35 0 0 chr4 124488008 124488037 -59800625 + AT_rich Low_complexity Low_complexity 1 29 0 35 54 0 0 chr4 124488765 124488821 -59799841 + AT_rich Low_complexity Low_complexity 1 56 0 395 372 99 0 chr4 124489091 124489314 -59799348 - MIR SINE MIR -15 247 3 181 346 10 20 chr4 124489343 124489444 -59799218 + L3 LINE CR1 1444 1543 -34 247 331 108 6 chr4 124489473 124489630 -59799032 + L2 LINE L2 2569 2741 -573 189 0 0 0 chr4 124490020 124490041 -59798621 + (TA)n Simple_repeat Simple_repeat 2 22 0 2125 98 0 26 chr4 124490041 124490346 -59798316 - AluSx SINE Alu -11 301 5 296 224 92 0 chr4 124490403 124490479 -59798183 + L2 LINE L2 3230 3312 -1 351 0 0 0 chr4 124491335 124491374 -59797288 + (TG)n Simple_repeat Simple_repeat 2 40 0 273 156 0 0 chr4 124491687 124491732 -59796930 - L1ME LINE L1 -467 5654 5610 215 364 85 0 chr4 124491762 124491891 -59796771 + L2 LINE L2 1798 1937 -1377 1557 154 52 73 chr4 124492520 124492903 -59795759 + THE1C LTR MaLR 1 375 0 1951 117 0 0 chr4 124493566 124493839 -59794823 + AluY SINE Alu 21 293 -18 216 0 0 0 chr4 124494411 124494435 -59794227 + (T)n Simple_repeat Simple_repeat 1 24 0 230 323 153 0 chr4 124494447 124494571 -59794091 - MER5B DNA MER1_type -29 149 7 566 54 0 43 chr4 124494599 124494691 -59793971 + (TC)n Simple_repeat Simple_repeat 1 88 0 256 291 18 55 chr4 124494912 124495077 -59793585 + L1ME LINE L1 5598 5756 -365 21 36 0 0 chr4 124495405 124495433 -59793229 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 124495611 124495639 -59793023 + AT_rich Low_complexity Low_complexity 1 28 0 435 286 45 17 chr4 124496039 124496217 -59792445 - LTR16C LTR ERVL -1 490 308 2801 16 0 0 chr4 124496717 124497027 -59791635 + AluYb8 SINE Alu 1 310 -8 3014 81 37 2 chr4 124497070 124497500 -59791162 + L1PA8 LINE L1 5728 6172 0 22 0 0 0 chr4 124497590 124497612 -59791050 + AT_rich Low_complexity Low_complexity 1 22 0 1620 145 28 50 chr4 124497736 124498053 -59790609 - AluSg SINE Alu 0 310 1 270 227 16 8 chr4 124498510 124498638 -59790024 + (TA)n Simple_repeat Simple_repeat 2 130 0 302 227 13 13 chr4 124498882 124499032 -59789630 + (TA)n Simple_repeat Simple_repeat 2 151 0 2093 139 0 0 chr4 124499311 124499620 -59789042 - AluSx SINE Alu -3 309 1 1295 136 99 108 chr4 124499862 124500214 -59788448 + THE1C LTR MaLR 1 349 -26 22 0 0 0 chr4 124500911 124500933 -59787729 + AT_rich Low_complexity Low_complexity 1 22 0 680 150 17 8 chr4 124501623 124501743 -59786919 - MLT1A1 LTR MaLR -240 125 5 21 0 0 0 chr4 124501821 124501842 -59786820 + AT_rich Low_complexity Low_complexity 1 21 0 496 251 251 6 chr4 124502459 124502642 -59786020 - MIR SINE MIR -27 235 8 21 57 0 0 chr4 124502722 124502757 -59785905 + AT_rich Low_complexity Low_complexity 1 35 0 1779 212 99 28 chr4 124503189 124503693 -59784969 - MLT1F LTR MaLR 0 542 3 225 297 119 20 chr4 124504134 124504235 -59784427 - MIR SINE MIR -108 154 44 2120 130 0 3 chr4 124504555 124504854 -59783808 + AluSg SINE Alu 3 300 -10 297 350 127 15 chr4 124505290 124505550 -59783112 - L2 LINE L2 -45 3268 2980 204 374 11 22 chr4 124506175 124506266 -59782396 + L2 LINE L2 3173 3262 -10 823 282 4 20 chr4 124506807 124507052 -59781610 + MIR SINE MIR 16 256 -6 352 259 205 23 chr4 124508334 124508510 -59780152 + L1M4 LINE L1 5449 5656 -522 248 276 0 8 chr4 124508560 124508683 -59779979 + (TG)n Simple_repeat Simple_repeat 1 122 0 816 153 18 6 chr4 124509181 124509351 -59779311 + GA-rich Low_complexity Low_complexity 4 175 0 223 352 45 40 chr4 124509476 124509652 -59779010 - L2 LINE L2 -342 2972 2796 21 0 0 0 chr4 124512306 124512327 -59776335 + AT_rich Low_complexity Low_complexity 1 21 0 44 20 0 0 chr4 124512670 124512721 -59775941 + AT_rich Low_complexity Low_complexity 1 51 0 270 0 0 0 chr4 124512757 124512787 -59775875 + (TA)n Simple_repeat Simple_repeat 1 30 0 346 304 129 13 chr4 124513093 124513317 -59775345 - MIR SINE MIR 0 262 13 373 282 92 0 chr4 124513666 124513808 -59774854 - MER112 DNA MER1_type -27 233 79 779 312 155 33 chr4 124514278 124514441 -59774221 + L2 LINE L2 2547 2689 -624 1994 125 20 3 chr4 124514441 124514745 -59773917 + AluSc SINE Alu 1 309 0 779 312 155 33 chr4 124514745 124515250 -59773412 + L2 LINE L2 2689 3313 0 199 291 39 39 chr4 124515247 124515350 -59773312 + MIR SINE MIR 148 250 -12 * 1396 187 22 122 chr4 124515459 124515919 -59772743 + MLT2D LTR ERVL 1 414 0 262 350 63 30 chr4 124516066 124516303 -59772359 - MLT1L LTR MaLR -203 412 168 2061 213 121 51 chr4 124516444 124517050 -59771612 - MLT1E1 LTR MaLR -6 648 1 215 269 15 0 chr4 124517264 124517331 -59771331 + MIR SINE MIR 184 251 -11 1744 180 7 0 chr4 124517356 124517650 -59771012 - AluSx SINE Alu -16 296 1 30 27 0 0 chr4 124517846 124517883 -59770779 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr4 124517952 124517987 -59770675 + AT_rich Low_complexity Low_complexity 1 35 0 200 295 26 13 chr4 124518283 124518361 -59770301 + L2 LINE L2 3190 3268 -4 2052 168 83 32 chr4 124519005 124519440 -59769222 + MSTB2 LTR MaLR 1 457 0 1490 231 67 78 chr4 124519724 124520339 -59768323 + MLT1E3 LTR MaLR 1 608 -16 219 349 23 0 chr4 124521351 124521437 -59767225 - L2 LINE L2 -1368 1946 1859 492 268 24 36 chr4 124523009 124523188 -59765474 - MIR3 SINE MIR -41 167 31 706 293 162 37 chr4 124523216 124523680 -59764982 - MER90 LTR ERV1 -16 559 38 234 403 97 19 chr4 124523710 124523864 -59764798 + L3 LINE CR1 1285 1450 -127 2278 192 37 56 chr4 124524429 124524945 -59763717 + LTR53 LTR ERVL 7 512 -7 1850 164 145 0 chr4 124527182 124527554 -59761108 - MSTB1 LTR MaLR 0 432 7 193 301 282 6 chr4 124527776 124527932 -59760730 - MIR SINE MIR -30 232 34 180 0 0 0 chr4 124529023 124529043 -59759619 + (A)n Simple_repeat Simple_repeat 1 20 0 48 18 0 0 chr4 124530452 124530507 -59758155 + AT_rich Low_complexity Low_complexity 1 55 0 5903 92 14 25 chr4 124530507 124531452 -59757210 - L1PB2 LINE L1 -2 6149 5195 1956 121 0 84 chr4 124531452 124531784 -59756878 - AluSx SINE Alu -8 304 1 5903 92 14 25 chr4 124531784 124532284 -59756378 - L1PB2 LINE L1 -956 5195 4691 775 217 27 62 chr4 124532287 124532545 -59756117 + L1P LINE L1 5063 5311 -835 8053 210 53 21 chr4 124532562 124535153 -59753509 - L1PBa LINE L1 -1464 5398 2675 2077 146 79 85 chr4 124535538 124535690 -59752972 - MER6A DNA MER2_type -260 605 454 1856 150 3 17 chr4 124535690 124535977 -59752685 + AluSx SINE Alu 2 284 -28 2077 146 79 85 chr4 124535977 124536319 -59752343 - MER6A DNA MER2_type -411 454 114 1424 193 75 59 chr4 124536444 124536766 -59751896 - MER6A DNA MER2_type -277 328 2 228 86 0 0 chr4 124537170 124537205 -59751457 + (CAAAAA)n Simple_repeat Simple_repeat 4 38 0 360 330 107 45 chr4 124537534 124537916 -59750746 - L1MEc LINE L1 -4730 1666 1261 207 0 0 0 chr4 124537996 124538019 -59750643 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2040 84 0 4 chr4 124538058 124538321 -59750341 - AluY SINE Alu -9 302 41 1465 281 132 2 chr4 124538380 124538850 -59749812 + MLT1E LTR MaLR 59 589 -4 2013 130 10 10 chr4 124538850 124539158 -59749504 + AluSx SINE Alu 1 308 -4 1854 154 75 24 chr4 124539955 124540010 -59748652 - MLT1B LTR MaLR 0 390 339 2079 133 3 48 chr4 124540010 124540363 -59748299 + MER1B DNA MER1_type 1 337 0 1854 154 75 24 chr4 124540363 124540678 -59747984 - MLT1B LTR MaLR -51 339 1 317 333 110 21 chr4 124542576 124542813 -59745849 + L2 LINE L2 2316 2573 -741 1301 210 88 26 chr4 124542889 124543357 -59745305 + MLT1E LTR MaLR 3 593 0 21 0 0 0 chr4 124543395 124543416 -59745246 + AT_rich Low_complexity Low_complexity 1 21 0 1550 218 84 16 chr4 124543429 124543800 -59744862 + MSTD LTR MaLR 1 396 0 457 350 155 21 chr4 124543979 124544270 -59744392 + L2 LINE L2 2943 3272 0 728 222 44 6 chr4 124546031 124546211 -59742451 - MER44D DNA MER2_type -59 546 488 2314 92 3 10 chr4 124547697 124548011 -59740651 - AluSp SINE Alu 0 313 2 23 0 0 0 chr4 124549094 124549117 -59739545 + AT_rich Low_complexity Low_complexity 1 23 0 208 189 0 0 chr4 124549522 124549559 -59739103 - L2 LINE L2 -219 3053 3017 21 57 0 0 chr4 124550508 124550543 -59738119 + AT_rich Low_complexity Low_complexity 1 35 0 234 220 17 0 chr4 124550561 124550620 -59738042 + (TA)n Simple_repeat Simple_repeat 1 60 0 6496 148 16 84 chr4 124551533 124552961 -59735701 - L1P LINE L1 -2297 3849 2519 5951 111 12 4 chr4 124552961 124553941 -59734721 + L1PA10 LINE L1 5172 6159 -9 223 266 96 64 chr4 124554829 124554923 -59733739 - L2 LINE L2 -9 3304 3208 22 35 0 0 chr4 124554936 124554965 -59733697 + AT_rich Low_complexity Low_complexity 1 29 0 217 246 0 53 chr4 124555230 124555287 -59733375 + L2 LINE L2 3210 3263 -9 774 167 21 7 chr4 124557571 124557715 -59730947 + L1PB4 LINE L1 6004 6149 -7 782 132 107 2 chr4 124558303 124558507 -59730155 + L1MA5A LINE L1 6059 6296 -4 2179 62 0 4 chr4 124558898 124559171 -59729491 + AluY SINE Alu 40 311 0 305 233 117 19 chr4 124560065 124560168 -59728494 + L2 LINE L2 3185 3297 -16 297 327 75 31 chr4 124560197 124560423 -59728239 + L2 LINE L2 1759 1994 -1320 23 0 0 0 chr4 124560573 124560596 -59728066 + AT_rich Low_complexity Low_complexity 1 23 0 2252 106 3 9 chr4 124561144 124561474 -59727188 + L1PB1 LINE L1 5821 6148 -3 24 32 0 0 chr4 124561475 124561506 -59727156 + AT_rich Low_complexity Low_complexity 1 31 0 185 363 50 25 chr4 124561526 124561686 -59726976 + L2 LINE L2 2576 2739 -575 1108 90 14 0 chr4 124561748 124561893 -59726769 - AluY SINE Alu -164 147 1 226 329 29 0 chr4 124562000 124562070 -59726592 - L2 LINE L2 0 3313 3242 200 209 23 0 chr4 124562201 124562244 -59726418 + L2 LINE L2 3265 3308 -5 1175 203 42 78 chr4 124564003 124564378 -59724284 - MLT1A2 LTR MaLR -2 465 9 193 264 240 16 chr4 124564769 124564894 -59723768 - MIR SINE MIR -46 216 64 265 324 102 42 chr4 124565295 124565511 -59723151 - MIR SINE MIR -2 260 32 799 251 98 92 chr4 124565531 124566022 -59722640 - MER21B LTR ERV1 -272 591 98 359 310 23 16 chr4 124565997 124566126 -59722536 - MER77 LTR ERV1 -410 195 66 * 2278 121 52 0 chr4 124566147 124566493 -59722169 - THE1B LTR MaLR 0 364 1 211 291 73 0 chr4 124566575 124566630 -59722032 + L2 LINE L2 3254 3312 -1 2600 176 54 29 chr4 124566837 124567388 -59721274 - MER34B LTR ERV1 0 565 1 1914 174 0 0 chr4 124567618 124567928 -59720734 + AluSg SINE Alu 1 310 0 246 95 0 0 chr4 124567936 124567978 -59720684 + (TTTTTA)n Simple_repeat Simple_repeat 3 44 0 1013 258 0 8 chr4 124568257 124568505 -59720157 + AluSg SINE Alu 64 309 -1 432 0 0 0 chr4 124568505 124568553 -59720109 + (TA)n Simple_repeat Simple_repeat 2 49 0 180 77 0 0 chr4 124571326 124571352 -59717310 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 187 311 104 49 chr4 124571555 124571738 -59716924 - L2 LINE L2 -183 3089 2897 3584 119 77 23 chr4 124571752 124572821 -59715841 - MER11A LTR ERVK 0 1236 1 21 0 0 0 chr4 124572954 124572975 -59715687 + AT_rich Low_complexity Low_complexity 1 21 0 479 276 55 93 chr4 124572992 124573390 -59715272 - HAL1 LINE L1 -6 2501 2119 431 222 146 58 chr4 124573427 124573702 -59714960 - HAL1 LINE L1 -357 2150 1852 408 333 28 51 chr4 124573725 124573980 -59714682 - L2 LINE L2 -32 3281 3033 683 175 29 88 chr4 124574043 124574214 -59714448 + MER110 LTR ERV1 1 161 -330 975 189 177 27 chr4 124574240 124574475 -59714187 - AluSx SINE Alu -13 299 20 2105 119 44 39 chr4 124574475 124574837 -59713825 - THE1B LTR MaLR 0 364 1 975 189 177 27 chr4 124574837 124574861 -59713801 - AluSx SINE Alu -292 20 1 458 268 24 8 chr4 124574861 124574984 -59713678 + MER110 LTR ERV1 182 306 -185 4178 145 20 11 chr4 124575014 124575718 -59712944 + MER50 LTR ERV1 1 710 -24 279 284 0 0 chr4 124575790 124575864 -59712798 + MER110 LTR ERV1 369 442 -49 1637 167 0 0 chr4 124576472 124576735 -59711927 - AluSx SINE Alu -38 274 12 1828 123 3 66 chr4 124577646 124577990 -59710672 + AluSx SINE Alu 1 325 0 1957 135 162 8 chr4 124578302 124578673 -59709989 + MSTA LTR MaLR 1 428 0 771 314 144 24 chr4 124578733 124579227 -59709435 + MLT1H1 LTR MaLR 3 555 0 345 304 85 57 chr4 124579345 124579460 -59709202 - L1ME LINE L1 -287 5883 5773 2198 116 3 3 chr4 124579460 124579770 -59708892 - AluY SINE Alu -1 310 1 345 304 85 57 chr4 124579770 124580277 -59708385 - L1ME LINE L1 -397 5773 5255 4146 145 40 16 chr4 124580436 124581207 -59707455 - L1MA9 LINE L1 0 6312 5523 1906 207 10 5 chr4 124581210 124581616 -59707046 - L1MA9 LINE L1 -1776 4370 3963 883 205 33 102 chr4 124581597 124582117 -59706545 - L1M4 LINE L1 -3714 3851 3367 * 26 64 0 0 chr4 124582245 124582292 -59706370 + AT_rich Low_complexity Low_complexity 1 47 0 268 284 27 80 chr4 124582628 124582812 -59705850 - MLT1I LTR MaLR -256 153 56 23 0 0 0 chr4 124582914 124582937 -59705725 + AT_rich Low_complexity Low_complexity 1 23 0 33 25 0 0 chr4 124582956 124582996 -59705666 + AT_rich Low_complexity Low_complexity 1 40 0 458 188 0 0 chr4 124583213 124583298 -59705364 - MER6A DNA MER2_type 0 605 521 * 582 207 60 0 chr4 124583297 124583413 -59705249 - MER6A DNA MER2_type -481 124 2 36 23 0 0 chr4 124584075 124584118 -59704544 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr4 124586337 124586358 -59702304 + AT_rich Low_complexity Low_complexity 1 21 0 5900 159 64 9 chr4 124586385 124587549 -59701113 + Tigger3b DNA MER2_type 2 1229 -2 2397 91 0 0 chr4 124587623 124587921 -59700741 + AluSc SINE Alu 1 298 -11 629 269 25 0 chr4 124588528 124588766 -59699896 - L1MEc LINE L1 -2734 3481 3238 14043 187 14 4 chr4 124588782 124592651 -59696011 - L1PB1 LINE L1 -8 6143 2239 3758 157 55 9 chr4 124592649 124593456 -59695206 - L1PBa LINE L1 -3741 3121 2275 * 1536 228 86 17 chr4 124593463 124594863 -59693799 - L1PBa LINE L1 -5216 1647 6 1792 286 77 14 chr4 124594898 124596026 -59692636 - L1MEc LINE L1 -3005 3210 1991 517 114 13 0 chr4 124596026 124596105 -59692557 + MADE1 DNA Mariner 1 80 0 1792 286 77 14 chr4 124596105 124596359 -59692303 - L1MEc LINE L1 -4224 1991 1754 5774 137 24 44 chr4 124596364 124597436 -59691226 - L1MA3 LINE L1 -1 6304 5266 2546 91 8 6 chr4 124597436 124597789 -59690873 - THE1A LTR MaLR -1 354 1 5774 137 24 44 chr4 124597789 124598193 -59690469 - L1MA3 LINE L1 -1039 5266 4855 664 186 41 7 chr4 124598187 124598332 -59690330 - L1MA3 LINE L1 -3806 2340 2191 * 5544 99 5 0 chr4 124598332 124599102 -59689560 - L1PA10 LINE L1 -16 6152 5379 316 78 0 109 chr4 124599127 124599191 -59689471 - L1PA10 LINE L1 -767 5394 5338 * 778 164 17 37 chr4 124599166 124599368 -59689294 - L1M4 LINE L1 -3905 3660 3463 727 147 33 44 chr4 124599716 124599946 -59688716 + LTR4 LTR ERV1 328 596 0 9209 133 47 18 chr4 124599946 124601604 -59687058 - L1M4 LINE L1 -4129 3436 1731 3073 180 62 3 chr4 124601579 124602161 -59686501 - L1M4 LINE L1 -6939 626 11 * 2006 266 78 36 chr4 124602147 124603574 -59685088 - L1MCc LINE L1 -4615 2507 819 * 2154 94 0 66 chr4 124603758 124604078 -59684584 - AluY SINE Alu -12 299 1 465 299 127 11 chr4 124604141 124604512 -59684150 - L1MCc LINE L1 -5986 437 24 23 0 0 0 chr4 124604535 124604558 -59684104 + AT_rich Low_complexity Low_complexity 1 23 0 216 200 0 0 chr4 124604745 124604785 -59683877 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 1113 325 47 5 chr4 124605967 124606373 -59682289 - LTR16A LTR ERVL -7 443 21 256 301 91 14 chr4 124606687 124606830 -59681832 - HERV16 LTR ERVL -323 4673 4520 325 380 61 13 chr4 124606905 124607218 -59681444 - ERVL LTR ERVL -783 4981 4654 305 349 28 39 chr4 124607296 124607580 -59681082 - ERVL LTR ERVL -956 4808 4528 253 365 149 0 chr4 124608176 124608324 -59680338 - LTR16A LTR ERVL -256 194 25 253 317 18 10 chr4 124608676 124608798 -59679864 - MIR SINE MIR -61 147 68 198 0 0 0 chr4 124609231 124609253 -59679409 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 2181 104 10 7 chr4 124609432 124609730 -59678932 - AluSg SINE Alu -11 299 1 1824 190 46 3 chr4 124609843 124610212 -59678450 - MLT1B LTR MaLR -4 386 2 231 263 120 38 chr4 124611027 124611160 -59677502 + MIR3 SINE MIR 63 206 -2 189 358 0 42 chr4 124612279 124612374 -59676288 + L2 LINE L2 2964 3054 -218 884 43 0 17 chr4 124613481 124613596 -59675066 + L1PA4 LINE L1 6040 6152 -3 186 43 0 0 chr4 124613642 124613665 -59674997 + (A)n Simple_repeat Simple_repeat 1 23 0 288 200 0 0 chr4 124613854 124613919 -59674743 + (TA)n Simple_repeat Simple_repeat 2 66 0 2481 68 0 10 chr4 124613985 124614296 -59674366 + AluY SINE Alu 1 308 -3 425 293 66 28 chr4 124614999 124615180 -59673482 - MIR SINE MIR -50 212 25 2049 150 0 0 chr4 124615946 124616240 -59672422 + AluSx SINE Alu 1 294 -18 28 29 0 0 chr4 124616413 124616448 -59672214 + AT_rich Low_complexity Low_complexity 1 35 0 2231 120 0 0 chr4 124616508 124616808 -59671854 - AluSg1 SINE Alu -7 302 3 189 0 0 0 chr4 124617104 124617125 -59671537 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 784 259 132 43 chr4 124617490 124617815 -59670847 + LTR16A LTR ERVL 97 450 0 1803 167 26 24 chr4 124620745 124621086 -59667576 - MLT1A1 LTR MaLR 0 365 24 297 307 89 0 chr4 124621124 124621225 -59667437 + MER81 DNA DNA 5 114 0 952 196 4 61 chr4 124621544 124621773 -59666889 + MER20 DNA MER1_type 4 219 0 410 344 52 32 chr4 124622230 124622538 -59666124 - MLT1I LTR MaLR 0 409 96 544 268 155 42 chr4 124622884 124623220 -59665442 + MLT1I LTR MaLR 28 401 -8 2032 229 86 8 chr4 124623241 124623836 -59664826 + LTR48B LTR ERV1 1 641 -3 678 148 113 0 chr4 124623898 124624013 -59664649 - FLAM_A SINE Alu -5 128 1 27 0 0 0 chr4 124625514 124625541 -59663121 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr4 124626303 124626331 -59662331 + AT_rich Low_complexity Low_complexity 1 28 0 455 275 114 47 chr4 124626767 124626978 -59661684 - MIR SINE MIR -12 250 26 599 204 0 0 chr4 124627262 124627360 -59661302 - Tigger7 DNA MER2_type -8 2579 2482 1116 244 4 4 chr4 124627362 124627596 -59661066 - Tigger7 DNA MER2_type -2253 234 1 25 51 0 0 chr4 124627637 124627676 -59660986 + AT_rich Low_complexity Low_complexity 1 39 0 603 284 176 48 chr4 124629090 124629405 -59659257 - LTR33 LTR ERVL -8 513 121 2098 134 71 3 chr4 124629405 124629770 -59658892 + MLT1B LTR MaLR 1 390 0 603 284 176 48 chr4 124629770 124629909 -59658753 - LTR33 LTR ERVL -400 121 1 2892 143 55 58 chr4 124630183 124630406 -59658256 - L1MA6 LINE L1 0 6300 6078 1248 56 11 11 chr4 124630406 124630585 -59658077 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2246 98 24 0 chr4 124630585 124630881 -59657781 - AluSx SINE Alu -9 303 1 2892 143 55 58 chr4 124630881 124631175 -59657487 - L1MA6 LINE L1 -221 6079 5781 1602 191 11 3 chr4 124631175 124631481 -59657181 - AluJb SINE Alu 0 308 1 2892 143 55 58 chr4 124631481 124631581 -59657081 - L1MA6 LINE L1 -519 5781 5682 2109 138 0 0 chr4 124631627 124631931 -59656731 + AluSx SINE Alu 1 304 -8 24 0 0 0 chr4 124634107 124634131 -59654531 + AT_rich Low_complexity Low_complexity 1 24 0 2133 221 118 20 chr4 124634646 124635306 -59653356 - MER50 LTR ERV1 0 734 10 727 222 78 0 chr4 124635368 124635548 -59653114 - L1ME3 LINE L1 -1 6161 5968 992 118 12 12 chr4 124635549 124635710 -59652952 - LTR7 LTR ERV1 0 450 290 2331 166 67 7 chr4 124635741 124635884 -59652778 - HERVH LTR ERV1 -6435 1278 1145 1658 58 0 10 chr4 124635884 124636090 -59652572 + AluY SINE Alu 99 302 -9 2331 166 67 7 chr4 124636090 124636397 -59652265 - HERVH LTR ERV1 -6568 1145 801 985 217 25 10 chr4 124636497 124636900 -59651762 - HERVH LTR ERV1 -7267 446 1 296 100 0 0 chr4 124636900 124636940 -59651722 - LTR7 LTR ERV1 0 450 411 789 131 7 15 chr4 124637014 124637151 -59651511 - LTR7 LTR ERV1 -314 136 1 2164 109 3 13 chr4 124637224 124637528 -59651134 - AluSg1 SINE Alu -8 301 1 604 115 19 13 chr4 124638750 124638906 -59649756 + (TA)n Simple_repeat Simple_repeat 1 157 0 1897 161 0 7 chr4 124639302 124639606 -59649056 + AluJb SINE Alu 3 304 -8 204 279 0 0 chr4 124639631 124639692 -59648970 + (TTCA)n Simple_repeat Simple_repeat 1 61 0 23 33 0 0 chr4 124639753 124639783 -59648879 + AT_rich Low_complexity Low_complexity 1 30 0 31 0 0 0 chr4 124640365 124640396 -59648266 + AT_rich Low_complexity Low_complexity 1 31 0 490 262 36 40 chr4 124641425 124641650 -59647012 - LTR37B LTR ERV1 -46 422 199 2428 103 0 0 chr4 124641743 124642054 -59646608 - AluSx SINE Alu 0 312 2 26 30 0 0 chr4 124642088 124642121 -59646541 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr4 124642570 124642598 -59646064 + AT_rich Low_complexity Low_complexity 1 28 0 378 299 107 22 chr4 124642641 124643094 -59645568 - L1ME LINE L1 -415 5747 5266 269 253 24 12 chr4 124643183 124643266 -59645396 - L1MC4 LINE L1 -1 8041 7958 250 318 53 40 chr4 124644438 124644589 -59644073 + L3 LINE CR1 1395 1547 -30 245 119 68 51 chr4 124646474 124646533 -59642129 - MLT2B1 LTR ERVL 0 520 461 237 152 0 43 chr4 124646681 124646727 -59641935 + MLT2D LTR ERVL 1 44 -370 1690 199 117 50 chr4 124646737 124647180 -59641482 - MLT2B1 LTR ERVL -47 473 1 474 339 20 43 chr4 124647439 124647693 -59640969 + MIR SINE MIR 4 251 -11 260 328 104 15 chr4 124647777 124647911 -59640751 + MER5B DNA MER1_type 18 163 -15 25 95 0 0 chr4 124648622 124648696 -59639966 + AT_rich Low_complexity Low_complexity 1 74 0 2580 89 24 8 chr4 124649068 124649437 -59639225 + THE1C LTR MaLR 1 375 0 322 245 29 49 chr4 124649439 124649541 -59639121 + L2 LINE L2 3214 3313 0 21 0 0 0 chr4 124649756 124649777 -59638885 + AT_rich Low_complexity Low_complexity 1 21 0 214 316 101 25 chr4 124649820 124649978 -59638684 - MIR SINE MIR -50 212 43 22 35 0 0 chr4 124652303 124652332 -59636330 + AT_rich Low_complexity Low_complexity 1 29 0 285 29 0 0 chr4 124652576 124652610 -59636052 + (T)n Simple_repeat Simple_repeat 1 34 0 1487 175 66 7 chr4 124652765 124653051 -59635611 - AluSx SINE Alu -8 304 2 22 0 0 0 chr4 124653444 124653466 -59635196 + AT_rich Low_complexity Low_complexity 1 22 0 3104 202 114 94 chr4 124653586 124654000 -59634662 + L1MDa LINE L1 16 420 -6120 2259 146 64 5 chr4 124654000 124654404 -59634258 + MSTA LTR MaLR 1 428 0 3104 202 114 94 chr4 124654404 124655117 -59633545 + L1MDa LINE L1 420 1166 -5374 3428 202 62 30 chr4 124655123 124655994 -59632668 + L1MD1 LINE L1 5341 6239 -3 14031 45 16 0 chr4 124656168 124658695 -59629967 + L1PA5 LINE L1 3608 6154 0 23 54 0 0 chr4 124660227 124660264 -59628398 + AT_rich Low_complexity Low_complexity 1 37 0 565 284 93 22 chr4 124661210 124661435 -59627227 - MIR SINE MIR -16 246 6 364 263 85 17 chr4 124666264 124666382 -59622280 - MIR SINE MIR -79 183 58 258 95 0 0 chr4 124666388 124666430 -59622232 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 350 330 0 0 chr4 124666432 124666532 -59622130 - L2 LINE L2 -28 3285 3186 397 208 0 25 chr4 124666805 124666925 -59621737 + (TATATG)n Simple_repeat Simple_repeat 3 119 0 4503 183 34 45 chr4 124667074 124667208 -59621454 - L1MA9 LINE L1 0 6200 6066 261 0 0 0 chr4 124667208 124667237 -59621425 + (TG)n Simple_repeat Simple_repeat 2 30 0 4503 183 34 45 chr4 124667237 124667477 -59621185 - L1MA9 LINE L1 -134 6066 5825 2551 139 26 0 chr4 124667477 124667900 -59620762 + MER57B LTR ERV1 1 434 0 4503 183 34 45 chr4 124667900 124668366 -59620296 - L1MA9 LINE L1 -375 5825 5355 3066 171 23 4 chr4 124668366 124668881 -59619781 - MER1A DNA MER1_type 0 527 3 4503 183 34 45 chr4 124668881 124669556 -59619106 - L1MA9 LINE L1 -845 5355 4694 2035 220 52 2 chr4 124669547 124670088 -59618574 - L1MA9 LINE L1 -2526 3508 2941 * 934 197 58 58 chr4 124670106 124670329 -59618333 - AluJo SINE Alu -4 308 86 1099 229 26 0 chr4 124670376 124670642 -59618020 - L1MA9 LINE L1 -3153 2881 2609 2755 276 89 28 chr4 124670651 124671894 -59616768 - L1MA9 LINE L1 -3580 2454 1289 2366 70 3 10 chr4 124671894 124672194 -59616468 - AluY SINE Alu -13 298 1 2755 276 89 28 chr4 124672194 124673949 -59614713 - L1MA9 LINE L1 -4745 1289 1 587 275 144 0 chr4 124674984 124675213 -59613449 - L1ME LINE L1 -3405 2675 2414 396 40 0 0 chr4 124675309 124675359 -59613303 + (TTTC)n Simple_repeat Simple_repeat 3 52 0 692 143 248 0 chr4 124675359 124675492 -59613170 - FRAM SINE Alu 0 166 1 2197 120 0 0 chr4 124675528 124675837 -59612825 - AluSc SINE Alu 0 309 1 422 285 50 0 chr4 124675840 124676040 -59612622 - L1ME LINE L1 -3727 2353 2144 * 1797 250 79 51 chr4 124676031 124676997 -59611665 - L1ME LINE L1 -4322 1939 874 24 0 0 0 chr4 124677000 124677024 -59611638 + AT_rich Low_complexity Low_complexity 1 24 0 358 248 92 34 chr4 124677033 124677239 -59611423 - L1ME LINE L1 -5327 743 526 289 349 38 25 chr4 124677606 124677844 -59610818 - L1ME LINE L1 -5762 308 68 231 265 103 0 chr4 124678756 124678873 -59609789 + MIR SINE MIR 79 207 -55 314 266 89 77 chr4 124679135 124679383 -59609279 + MIR SINE MIR 12 262 0 1910 159 0 13 chr4 124679443 124679751 -59608911 + AluJb SINE Alu 1 304 -8 312 337 116 16 chr4 124679792 124679982 -59608680 - MIR SINE MIR -41 221 13 21 0 0 0 chr4 124680167 124680188 -59608474 + AT_rich Low_complexity Low_complexity 1 21 0 255 31 0 0 chr4 124680786 124680818 -59607844 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1683 153 30 43 chr4 124682382 124682605 -59606057 - AluJb SINE Alu -16 296 76 2172 107 0 0 chr4 124682605 124682904 -59605758 + AluSg SINE Alu 1 299 -11 1683 153 30 43 chr4 124682904 124682980 -59605682 - AluJb SINE Alu -236 76 1 313 255 128 48 chr4 124682989 124683138 -59605524 + MLT1J LTR MaLR 241 487 -128 1867 266 27 19 chr4 124683342 124683925 -59604737 + Zaphod DNA AcHobo 192 779 -3252 * 2101 266 53 17 chr4 124683919 124684670 -59603992 + Zaphod DNA AcHobo 2410 3187 -844 542 241 84 28 chr4 124684695 124684944 -59603718 + Zaphod DNA AcHobo 3344 3606 -425 198 0 0 0 chr4 124685668 124685690 -59602972 + (T)n Simple_repeat Simple_repeat 1 22 0 263 289 26 0 chr4 124685701 124685777 -59602885 + MLT1F LTR MaLR 2 79 -463 22 0 0 0 chr4 124686059 124686081 -59602581 + AT_rich Low_complexity Low_complexity 1 22 0 246 238 59 40 chr4 124686336 124686437 -59602225 + MLT1F LTR MaLR 1 103 -439 2579 58 0 0 chr4 124686449 124686760 -59601902 - AluY SINE Alu 0 311 1 226 260 90 10 chr4 124687469 124687569 -59601093 + L2 LINE L2 3197 3304 -9 222 174 0 0 chr4 124688457 124688503 -59600159 + (TG)n Simple_repeat Simple_repeat 2 47 0 253 290 61 70 chr4 124689259 124689441 -59599221 - MIR SINE MIR -55 207 19 198 359 137 22 chr4 124690454 124691037 -59597625 + L2 LINE L2 2031 2680 -634 22 35 0 0 chr4 124691185 124691214 -59597448 + AT_rich Low_complexity Low_complexity 1 29 0 2167 124 44 39 chr4 124692927 124693289 -59595373 + THE1B LTR MaLR 1 364 0 640 263 35 2 chr4 124693691 124693864 -59594798 + MIR SINE MIR 64 238 -24 1167 241 136 63 chr4 124694606 124695119 -59593543 - MLT1F1 LTR MaLR -8 559 12 380 257 61 7 chr4 124695627 124695775 -59592887 - L1MC5 LINE L1 -546 7415 7260 551 253 78 31 chr4 124695862 124696197 -59592465 - L1MC4 LINE L1 -733 7228 6907 536 267 63 10 chr4 124696209 124696415 -59592247 + L2 LINE L2 3094 3310 -3 186 133 0 0 chr4 124696446 124696476 -59592186 + (TG)n Simple_repeat Simple_repeat 1 30 0 790 259 104 36 chr4 124696758 124697094 -59591568 + L2 LINE L2 2130 2488 -826 291 290 56 19 chr4 124697266 124697373 -59591289 + MER5A DNA MER1_type 36 146 -43 279 232 80 16 chr4 124697564 124697689 -59590973 - Charlie2 DNA MER1_type -1 2861 2729 276 216 397 0 chr4 124697789 124697905 -59590757 - MER5A DNA MER1_type 0 189 28 298 292 22 11 chr4 124697995 124698084 -59590578 - Charlie2 DNA MER1_type -2460 322 233 2063 105 43 0 chr4 124698329 124698605 -59590057 + AluSx SINE Alu 18 305 -7 3449 201 52 21 chr4 124699330 124700107 -59588555 - LTR1B LTR ERV1 0 826 26 2033 119 21 0 chr4 124700231 124700517 -59588145 + AluSg SINE Alu 1 292 -18 221 276 23 0 chr4 124702241 124702328 -59586334 + (TA)n Simple_repeat Simple_repeat 1 89 0 21 0 0 0 chr4 124702697 124702718 -59585944 + AT_rich Low_complexity Low_complexity 1 21 0 22 20 8 0 chr4 124704560 124704630 -59584032 + AT_rich Low_complexity Low_complexity 1 29 0 546 317 10 34 chr4 124706758 124706966 -59581696 - MIR SINE MIR -13 249 47 342 270 147 0 chr4 124707118 124707249 -59581413 + MIR SINE MIR 82 260 -2 4107 160 18 11 chr4 124710328 124711033 -59577629 + MER50 LTR ERV1 2 711 -23 626 210 156 0 chr4 124711268 124711454 -59577208 + MER5C DNA MER1_type 60 274 -50 1172 122 0 0 chr4 124711827 124711991 -59576671 + AluSp SINE Alu 133 296 -17 268 224 0 30 chr4 124712084 124712151 -59576511 + T-rich Low_complexity Low_complexity 5 69 0 235 226 0 65 chr4 124712657 124712719 -59575943 + MER5B DNA MER1_type 1 58 -120 380 287 85 58 chr4 124714172 124714395 -59574267 - HAL1 LINE L1 -59 2448 2220 37 52 0 0 chr4 124714401 124714459 -59574203 + AT_rich Low_complexity Low_complexity 1 58 0 319 242 57 108 chr4 124714525 124714682 -59573980 - HAL1b LINE L1 -448 900 752 237 234 13 13 chr4 124714766 124714843 -59573819 - HAL1 LINE L1 -357 2150 2074 284 299 269 6 chr4 124715260 124715427 -59573235 + MLT1I LTR MaLR 59 269 -140 514 168 9 75 chr4 124715488 124715595 -59573067 - Tigger7 DNA MER2_type -1 2486 2387 * 2870 155 50 8 chr4 124715572 124716076 -59572586 - Tigger7 DNA MER2_type -208 525 1 810 314 58 31 chr4 124716078 124716697 -59571965 - L2 LINE L2 -35 3278 2645 309 299 56 33 chr4 124716826 124717040 -59571622 - HAL1 LINE L1 -1059 1448 1230 23 0 0 0 chr4 124717071 124717094 -59571568 + AT_rich Low_complexity Low_complexity 1 23 0 299 263 30 38 chr4 124717101 124717234 -59571428 + Charlie8 DNA MER1_type 348 479 -1938 1284 163 220 0 chr4 124718333 124718628 -59570034 + MER46B DNA MER2_type 2 236 0 2880 3 0 0 chr4 124718737 124719048 -59569614 + AluYa5 SINE Alu 1 311 0 1244 174 42 8 chr4 124719523 124719759 -59568903 - AluJb SINE Alu -68 244 1 254 246 0 0 chr4 124719905 124719974 -59568688 - L1MEd LINE L1 -3959 2170 2102 321 338 15 23 chr4 124720247 124720380 -59568282 - L2 LINE L2 -1 3312 3181 597 307 129 14 chr4 124720554 124721168 -59567494 - L1MEd LINE L1 -4689 1621 895 984 264 118 43 chr4 124721493 124721909 -59566753 - MLT1H LTR MaLR -32 517 71 1248 181 120 32 chr4 124722087 124722429 -59566233 + MLT1A2 LTR MaLR 3 374 0 216 0 0 0 chr4 124722501 124722525 -59566137 + (T)n Simple_repeat Simple_repeat 1 24 0 8740 51 0 0 chr4 124722680 124724539 -59564123 - L1PA5 LINE L1 -14 6140 4284 1213 146 189 5 chr4 124724717 124724929 -59563733 + AluSx SINE Alu 37 287 -25 932 200 45 0 chr4 124725179 124725379 -59563283 - MER3 DNA MER1_type 0 209 1 430 287 13 45 chr4 124726383 124726540 -59562122 - MIR SINE MIR -10 252 101 1921 136 11 0 chr4 124727416 124727728 -59560934 + AluSx SINE Alu 1 315 0 28 48 0 0 chr4 124727909 124727951 -59560711 + AT_rich Low_complexity Low_complexity 1 42 0 1596 139 4 0 chr4 124728671 124728909 -59559753 + AluSp SINE Alu 1 239 -74 267 31 0 0 chr4 124728937 124728969 -59559693 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 2373 84 24 43 chr4 124730351 124730722 -59557940 + THE1B LTR MaLR 1 364 0 429 36 0 0 chr4 124730942 124730997 -59557665 + (TG)n Simple_repeat Simple_repeat 2 56 0 1637 176 91 0 chr4 124731667 124731985 -59556677 - MER7A DNA MER2_type 0 346 2 213 182 0 0 chr4 124732109 124732164 -59556498 + (TA)n Simple_repeat Simple_repeat 1 55 0 231 61 0 0 chr4 124732231 124732264 -59556398 + (TA)n Simple_repeat Simple_repeat 1 33 0 516 347 78 5 chr4 124732381 124732767 -59555895 - L2 LINE L2 -1241 2073 1660 1713 170 73 25 chr4 124732889 124733247 -59555415 - THE1C LTR MaLR 0 375 1 9419 141 11 31 chr4 124733251 124734850 -59553812 - THE1C-int LTR MaLR -11 1569 3 1548 140 71 41 chr4 124734852 124735194 -59553468 - THE1C LTR MaLR 0 355 1 271 289 194 55 chr4 124735659 124735860 -59552802 + MIR SINE MIR 20 248 -14 341 355 170 31 chr4 124737872 124738850 -59549812 - L2 LINE L2 -674 2640 1527 229 220 0 0 chr4 124742056 124742106 -59546556 - L1PA16 LINE L1 -12 6154 6105 2616 164 34 4 chr4 124742217 124743059 -59545603 - L1P4 LINE L1 -483 5683 4821 577 104 0 83 chr4 124743061 124743157 -59545505 + THE1A LTR MaLR 268 355 0 276 216 397 0 chr4 124743622 124743738 -59544924 - MER5A DNA MER1_type 0 189 28 869 276 75 4 chr4 124743827 124744092 -59544570 - Charlie2 DNA MER1_type -2460 322 39 292 307 57 21 chr4 124744194 124744334 -59544328 + MIR SINE MIR 118 262 0 244 323 65 24 chr4 124744698 124744822 -59543840 + L2 LINE L2 3185 3313 0 247 307 50 50 chr4 124745527 124745667 -59542995 - L2 LINE L2 -1 3271 3132 192 217 0 0 chr4 124747080 124747126 -59541536 + T-rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr4 124748259 124748281 -59540381 + AT_rich Low_complexity Low_complexity 1 22 0 3127 181 70 25 chr4 124748402 124749097 -59539565 - LTR8A LTR ERV1 0 727 1 21 0 0 0 chr4 124749259 124749280 -59539382 + AT_rich Low_complexity Low_complexity 1 21 0 1936 134 24 3 chr4 124749579 124749869 -59538793 - AluSx SINE Alu -16 296 1 216 97 0 0 chr4 124751796 124751827 -59536835 + (GAA)n Simple_repeat Simple_repeat 2 32 0 24 53 0 0 chr4 124752153 124752191 -59536471 + AT_rich Low_complexity Low_complexity 1 38 0 2287 96 0 3 chr4 124753047 124753348 -59535314 + AluSq SINE Alu 1 300 -13 241 133 24 48 chr4 124753575 124753658 -59535004 + (TAGA)n Simple_repeat Simple_repeat 1 81 0 247 278 91 21 chr4 124754581 124754768 -59533894 + L1MDb LINE L1 1149 1348 -5061 2069 109 44 0 chr4 124754990 124755284 -59533378 - AluY SINE Alu -4 307 1 1555 182 27 10 chr4 124756585 124756700 -59531962 + AluJo SINE Alu 1 113 -199 222 37 0 0 chr4 124756700 124756727 -59531935 + (CAA)n Simple_repeat Simple_repeat 1 27 0 1555 182 27 10 chr4 124756727 124756739 -59531923 + AluJo SINE Alu 113 123 -189 2712 0 0 17 chr4 124756739 124757038 -59531624 + AluYa5 SINE Alu 5 298 -13 1555 182 27 10 chr4 124757038 124757205 -59531457 + AluJo SINE Alu 123 301 -11 394 259 122 8 chr4 124758463 124758594 -59530068 + MIR3 SINE MIR 15 160 -48 1749 130 21 101 chr4 124759449 124759827 -59528835 - MER7A DNA MER2_type 0 346 1 1450 146 135 0 chr4 124760700 124760960 -59527702 - AluJb SINE Alu -6 296 2 531 282 63 0 chr4 124761404 124761578 -59527084 - MIR SINE MIR 0 262 78 1710 296 47 34 chr4 124761589 124762208 -59526454 - MLT2F LTR ERVL -26 637 11 1491 321 91 21 chr4 124762592 124763483 -59525179 + L2 LINE L2 51 1003 -2311 1195 332 122 8 chr4 124763483 124764083 -59524579 + L2 LINE L2 2194 2861 -453 334 315 46 83 chr4 124764569 124764871 -59523791 + L2 LINE L2 3023 3313 0 36 100 0 0 chr4 124766378 124766498 -59522164 + AT_rich Low_complexity Low_complexity 1 120 0 261 386 71 0 chr4 124766625 124766752 -59521910 - L2 LINE L2 0 3272 3137 2024 160 110 9 chr4 124767012 124767431 -59521231 + LOR1b LTR ERV1 1 461 0 21 0 0 0 chr4 124767761 124767782 -59520880 + AT_rich Low_complexity Low_complexity 1 21 0 1401 186 4 21 chr4 124767883 124768120 -59520542 + Tigger5 DNA MER2_type 3 235 -2088 23 54 0 0 chr4 124769309 124769346 -59519316 + AT_rich Low_complexity Low_complexity 1 37 0 2120 95 6 38 chr4 124769824 124770139 -59518523 + AluSx SINE Alu 1 305 -7 487 344 14 18 chr4 124771906 124772127 -59516535 + LTR33 LTR ERVL 5 224 -297 629 308 102 55 chr4 124773557 124773996 -59514666 - L2 LINE L2 -18 3295 2836 438 20 0 0 chr4 124774666 124774717 -59513945 + (TG)n Simple_repeat Simple_repeat 2 52 0 8686 115 20 6 chr4 124774727 124775994 -59512668 - HSMAR1 DNA Mariner -2 1285 1 567 331 115 18 chr4 124777976 124778593 -59510069 - L1ME3A LINE L1 -231 5939 5263 1637 185 154 34 chr4 124779171 124779581 -59509081 - LOR1b LTR ERV1 -2 459 1 2193 155 2 57 chr4 124779971 124780390 -59508272 - MER57A LTR ERV1 0 403 8 214 273 65 13 chr4 124780526 124780603 -59508059 - L2 LINE L2 -8 3305 3225 2476 171 58 19 chr4 124781109 124781624 -59507038 + MER34C LTR ERV1 37 571 -14 3225 163 49 13 chr4 124781765 124782377 -59506285 - MER39B LTR ERV1 -19 634 1 21 0 0 0 chr4 124782825 124782846 -59505816 + AT_rich Low_complexity Low_complexity 1 21 0 2715 167 53 2 chr4 124782910 124783382 -59505280 - MER41E LTR ERV1 0 512 17 30 77 0 0 chr4 124783511 124783576 -59505086 + AT_rich Low_complexity Low_complexity 1 65 0 24 77 0 0 chr4 124783702 124783754 -59504908 + AT_rich Low_complexity Low_complexity 1 52 0 220 286 24 8 chr4 124783765 124783891 -59504771 + (TA)n Simple_repeat Simple_repeat 2 129 0 1553 251 64 12 chr4 124784856 124785279 -59503383 + LTR40c LTR ERVL 6 450 -15 2665 163 76 38 chr4 124785626 124786232 -59502430 - LTR27 LTR ERV1 -4 632 4 1333 294 35 46 chr4 124786233 124786800 -59501862 + HERVL40 LTR ERVL 992 1552 -3978 2009 165 30 28 chr4 124786800 124787305 -59501357 + MLT2A2 LTR ERVL 1 406 -47 347 153 0 12 chr4 124787308 124787393 -59501269 + (TA)n Simple_repeat Simple_repeat 2 85 0 252 101 0 79 chr4 124787396 124787408 -59501254 + MLT2A2 LTR ERVL 388 399 -54 387 0 0 0 chr4 124787408 124787451 -59501211 + (TG)n Simple_repeat Simple_repeat 2 44 0 252 101 0 79 chr4 124787451 124787494 -59501168 + MLT2A2 LTR ERVL 399 445 -8 886 276 15 15 chr4 124787687 124787948 -59500714 + HERVL40 LTR ERVL 1808 2068 -1488 4426 233 43 48 chr4 124788070 124788388 -59500274 + HERVL40 LTR ERVL 2093 2411 -1145 2249 129 22 19 chr4 124788388 124788751 -59499911 - THE1B LTR MaLR 0 364 1 4426 233 43 48 chr4 124788751 124789669 -59498993 + HERVL40 LTR ERVL 2411 3552 -4 1354 246 65 11 chr4 124789673 124790043 -59498619 + LTR52 LTR ERVL 13 402 -19 2772 261 55 30 chr4 124790058 124791872 -59496790 + HERVL40 LTR ERVL 3547 5530 0 1001 206 42 158 chr4 124791873 124792150 -59496512 + LTR40c LTR ERVL 2 191 -274 530 127 0 0 chr4 124792150 124792229 -59496433 + MADE1 DNA Mariner 2 80 0 1001 206 42 158 chr4 124792229 124792476 -59496186 + LTR40c LTR ERVL 191 465 0 4615 58 17 52 chr4 124793160 124794226 -59494436 + MER11A LTR ERVK 1 1266 0 821 210 6 12 chr4 124794980 124795147 -59493515 + FRAM SINE Alu 1 166 0 740 265 189 12 chr4 124795189 124795742 -59492920 - LTR50 LTR ERVL -1 794 53 342 282 20 27 chr4 124796019 124796168 -59492494 + L1MC4 LINE L1 6555 6702 -1340 1433 177 78 39 chr4 124796175 124796536 -59492126 - THE1C LTR MaLR 0 375 1 364 247 35 11 chr4 124796536 124796710 -59491952 + (TA)n Simple_repeat Simple_repeat 1 178 0 1617 203 32 25 chr4 124796731 124797139 -59491523 + L1MD3 LINE L1 6702 7112 -883 256 305 24 0 chr4 124797143 124797225 -59491437 + MLT1F1 LTR MaLR 36 119 -448 725 249 56 5 chr4 124797244 124797457 -59491205 + L1MD3 LINE L1 7416 7639 -356 678 316 22 18 chr4 124797623 124797895 -59490767 + LTR16B LTR ERVL 192 464 0 1679 135 0 34 chr4 124798042 124798309 -59490353 - AluSx SINE Alu -54 258 1 224 247 96 0 chr4 124799843 124799916 -59488746 + MIR SINE MIR 124 203 -59 4000 79 2 32 chr4 124800063 124800633 -59488029 + MER41A LTR ERV1 1 553 -1 324 64 0 21 chr4 124801856 124801903 -59486759 - MLT2B1 LTR ERVL -2 518 473 10407 136 24 9 chr4 124801904 124803618 -59485044 + Tigger1 DNA MER2_type 1 1739 -679 1551 184 7 30 chr4 124803698 124804003 -59484659 + AluJo SINE Alu 2 299 -13 2013 121 29 13 chr4 124805720 124806027 -59482635 - AluSx SINE Alu 0 312 1 337 261 103 12 chr4 124806219 124806373 -59482289 - L1ME3A LINE L1 -201 5969 5798 1759 207 89 3 chr4 124806373 124806765 -59481897 + MSTA LTR MaLR 1 426 -2 1012 194 93 28 chr4 124806775 124807022 -59481640 + MER6A DNA MER2_type 1 263 -342 4908 153 11 33 chr4 124807027 124808065 -59480597 + L1 LINE L1 4408 5424 -743 * 6096 104 19 5 chr4 124808063 124808982 -59479680 + L1MA2 LINE L1 5374 6304 0 25 0 0 0 chr4 124808987 124809012 -59479650 + AT_rich Low_complexity Low_complexity 1 25 0 1240 276 102 9 chr4 124809259 124809711 -59478951 - L1ME2 LINE L1 -183 5981 5488 24 0 0 0 chr4 124809720 124809744 -59478918 + AT_rich Low_complexity Low_complexity 1 24 0 1193 258 43 13 chr4 124809929 124810324 -59478338 - L1ME2 LINE L1 -1250 4896 4490 1624 92 9 0 chr4 124810406 124810634 -59478028 - L1PA7 LINE L1 -13 6141 5912 405 0 0 0 chr4 124811034 124811079 -59477583 + (CA)n Simple_repeat Simple_repeat 2 46 0 28 86 0 0 chr4 124812228 124812298 -59476364 + AT_rich Low_complexity Low_complexity 1 70 0 308 299 167 7 chr4 124812574 124812718 -59475944 + MIR SINE MIR 92 258 -4 346 311 114 36 chr4 124813259 124813792 -59474870 + L1M4 LINE L1 3715 4289 -1857 1400 132 0 0 chr4 124813798 124814002 -59474660 + AluSq SINE Alu 1 204 -109 2009 200 94 43 chr4 124914517 124915007 -59373655 + MLT2B3 LTR ERVL 1 515 -39 348 175 62 12 chr4 124915028 124915108 -59373554 + Ricksha DNA DNA 830 913 -1133 202 114 0 29 chr4 124915162 124915197 -59373465 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 1321 166 80 29 chr4 124915200 124915513 -59373149 + THE1C LTR MaLR 1 329 -46 3078 147 62 62 chr4 124915627 124916497 -59372165 + pTR5 LTR ERV1 292 2198 -240 2143 103 14 0 chr4 124916788 124917080 -59371582 - AluY SINE Alu -13 298 3 52 17 0 0 chr4 124918455 124918514 -59370148 + AT_rich Low_complexity Low_complexity 1 59 0 260 172 0 16 chr4 124918558 124918622 -59370040 + (TA)n Simple_repeat Simple_repeat 1 63 0 21 57 0 0 chr4 124919124 124919159 -59369503 + AT_rich Low_complexity Low_complexity 1 35 0 298 293 34 0 chr4 124919736 124919883 -59368779 + (TA)n Simple_repeat Simple_repeat 1 152 0 23 33 0 0 chr4 124923301 124923331 -59365331 + AT_rich Low_complexity Low_complexity 1 30 0 27 62 0 0 chr4 124923838 124923886 -59364776 + AT_rich Low_complexity Low_complexity 1 48 0 191 274 113 0 chr4 124924272 124924334 -59364328 - L2 LINE L2 -8 3305 3237 24 0 0 0 chr4 124924823 124924847 -59363815 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4 124926274 124926296 -59362366 + AT_rich Low_complexity Low_complexity 1 22 0 289 289 0 44 chr4 124928797 124928887 -59359775 - L2 LINE L2 -1 3271 3186 318 381 31 31 chr4 124929108 124929302 -59359360 - MIR SINE MIR -49 213 20 21 0 0 0 chr4 124929583 124929604 -59359058 + AT_rich Low_complexity Low_complexity 1 21 0 37 81 0 0 chr4 124929680 124929766 -59358896 + AT_rich Low_complexity Low_complexity 1 86 0 28 29 0 0 chr4 124930087 124930122 -59358540 + AT_rich Low_complexity Low_complexity 1 35 0 180 77 0 0 chr4 124931047 124931073 -59357589 + (TAG)n Simple_repeat Simple_repeat 2 27 0 2320 98 3 0 chr4 124931756 124932053 -59356609 + AluSp SINE Alu 1 298 -15 26 0 0 0 chr4 124932486 124932512 -59356150 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr4 124933465 124933494 -59355168 + AT_rich Low_complexity Low_complexity 1 29 0 413 335 53 5 chr4 124933620 124933808 -59354854 - MIR SINE MIR -10 252 56 3622 202 33 26 chr4 124934590 124935510 -59353152 + L1MB1 LINE L1 4427 5374 -960 1939 98 42 18 chr4 124935510 124935795 -59352867 + AluY SINE Alu 1 292 -19 3622 202 33 26 chr4 124935795 124936056 -59352606 + L1MB1 LINE L1 5374 5632 -702 2147 178 31 20 chr4 124936060 124936131 -59352531 + L1MB1 LINE L1 5713 5782 -386 1173 181 13 25 chr4 124936131 124936369 -59352293 + MER46A DNA MER2_type 2 236 0 2147 178 31 20 chr4 124936369 124936747 -59351915 + L1MB1 LINE L1 5782 6167 -1 214 346 77 39 chr4 124937224 124937354 -59351308 - MIR SINE MIR -10 252 118 744 288 33 12 chr4 124937975 124938218 -59350444 + MIR SINE MIR 15 262 0 22 0 0 0 chr4 124939807 124939829 -59348833 + AT_rich Low_complexity Low_complexity 1 22 0 38 0 0 0 chr4 124941640 124941678 -59346984 + AT_rich Low_complexity Low_complexity 1 38 0 25 31 0 0 chr4 124942144 124942176 -59346486 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr4 124943682 124943717 -59344945 + AT_rich Low_complexity Low_complexity 1 35 0 621 260 64 43 chr4 124943946 124944181 -59344481 + MIR SINE MIR 9 248 -14 423 132 0 0 chr4 124944373 124944441 -59344221 + (TA)n Simple_repeat Simple_repeat 1 68 0 218 282 0 0 chr4 124944676 124944813 -59343849 + (TG)n Simple_repeat Simple_repeat 1 137 0 21 57 0 0 chr4 124944980 124945015 -59343647 + AT_rich Low_complexity Low_complexity 1 35 0 253 164 36 0 chr4 124945030 124945085 -59343577 - L1MC4 LINE L1 -1333 6709 6653 191 313 70 17 chr4 124945086 124945201 -59343461 - MIR SINE MIR -77 185 65 23 0 0 0 chr4 124946149 124946172 -59342490 + AT_rich Low_complexity Low_complexity 1 23 0 201 359 46 90 chr4 124947197 124947520 -59341142 - L2 LINE L2 0 3272 2964 24 53 0 0 chr4 124950062 124950100 -59338562 + AT_rich Low_complexity Low_complexity 1 38 0 22 70 0 0 chr4 124950600 124950643 -59338019 + AT_rich Low_complexity Low_complexity 1 43 0 376 192 20 0 chr4 124951335 124951434 -59337228 + (CTA)n Simple_repeat Simple_repeat 2 102 0 1822 44 0 13 chr4 124951527 124951753 -59336909 + AluY SINE Alu 71 293 -18 227 327 167 37 chr4 124951757 124951919 -59336743 + MER5A DNA MER1_type 4 186 -3 28 29 0 0 chr4 124951940 124951975 -59336687 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr4 124952253 124952279 -59336383 + AT_rich Low_complexity Low_complexity 1 26 0 562 325 0 6 chr4 124952362 124952519 -59336143 + MIR SINE MIR 45 200 -62 1780 99 22 102 chr4 124952646 124952968 -59335694 + AluYb8 SINE Alu 1 296 -22 269 250 79 0 chr4 124955221 124955297 -59333365 + MIR SINE MIR 127 208 -54 22 0 0 0 chr4 124955857 124955879 -59332783 + AT_rich Low_complexity Low_complexity 1 22 0 358 337 74 0 chr4 124956299 124956462 -59332200 - MIR SINE MIR -51 211 37 24 0 0 0 chr4 124956465 124956489 -59332173 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 124956662 124956683 -59331979 + AT_rich Low_complexity Low_complexity 1 21 0 203 256 78 44 chr4 124958126 124958216 -59330446 + MIR SINE MIR 53 145 -117 614 213 8 0 chr4 124958775 124958902 -59329760 - Charlie2a DNA MER1_type -1224 1638 1511 256 322 149 37 chr4 124959140 124959382 -59329280 - Charlie2a DNA MER1_type -2513 269 1 378 254 114 0 chr4 124959403 124959517 -59329145 + MER94 DNA DNA 6 132 -2 205 96 77 0 chr4 124959623 124959675 -59328987 + (TATAA)n Simple_repeat Simple_repeat 4 59 0 21 0 0 0 chr4 124960577 124960598 -59328064 + AT_rich Low_complexity Low_complexity 1 21 0 180 222 0 0 chr4 124961626 124961662 -59327000 + L3 LINE CR1 1542 1577 0 206 211 0 0 chr4 124963677 124963715 -59324947 + L2 LINE L2 70 107 -3207 24625 27 2 1 chr4 124963715 124967455 -59321207 - L1PA3 LINE L1 -2 6153 2411 356 98 0 0 chr4 124967455 124967506 -59321156 + L1P LINE L1 760 810 -5336 3369 292 113 75 chr4 124967681 124968526 -59320136 + L2 LINE L2 194 1006 -2308 282 73 0 0 chr4 124968526 124968567 -59320095 + (CA)n Simple_repeat Simple_repeat 1 41 0 3369 292 113 75 chr4 124968567 124969942 -59318720 + L2 LINE L2 1006 2498 -816 1063 312 97 18 chr4 124969929 124970565 -59318097 - L2 LINE L2 -1 3312 2641 * 754 266 23 8 chr4 124971873 124972129 -59316533 + MER46C DNA MER2_type 79 338 0 2013 117 0 23 chr4 124972148 124972455 -59316207 + AluY SINE Alu 1 300 -11 21 0 0 0 chr4 124972464 124972485 -59316177 + AT_rich Low_complexity Low_complexity 1 21 0 933 145 42 26 chr4 124972706 124972899 -59315763 - L1MA4A LINE L1 -304 5999 5804 673 171 0 16 chr4 124972900 124973029 -59315633 - L1M2 LINE L1 -4599 2250 2124 568 156 0 0 chr4 124973044 124973134 -59315528 - AluSg/x SINE Alu -21 291 202 3879 252 43 18 chr4 124973156 124974219 -59314443 - L1M2 LINE L1 -4788 2061 972 210 254 75 0 chr4 124974365 124974432 -59314230 + L2 LINE L2 3201 3272 0 823 306 38 4 chr4 124975679 124975940 -59312722 + MER46C DNA MER2_type 68 337 -1 1067 179 0 31 chr4 124976255 124976451 -59312211 - AluJb SINE Alu -2 310 121 4789 171 25 6 chr4 124976594 124977135 -59311527 + L1PA16 LINE L1 4869 5398 -768 1679 144 218 8 chr4 124977135 124977489 -59311173 + MSTA LTR MaLR 1 428 0 4789 171 25 6 chr4 124977489 124978226 -59310436 + L1PA16 LINE L1 5398 6164 -2 31 58 0 0 chr4 124978226 124978278 -59310384 + AT_rich Low_complexity Low_complexity 1 52 0 533 344 21 0 chr4 124978563 124978749 -59309913 + MER63A DNA MER1_type 17 206 -4 26 50 0 0 chr4 124978784 124978824 -59309838 + AT_rich Low_complexity Low_complexity 1 40 0 244 169 0 17 chr4 124978825 124978884 -59309778 - L1PA16 LINE L1 -3 6163 6106 914 188 10 58 chr4 124978990 124979198 -59309464 + MSTD LTR MaLR 199 396 0 925 220 107 97 chr4 124979297 124979724 -59308938 + MLT2B1 LTR ERVL 1 480 -40 194 98 49 0 chr4 124979727 124979768 -59308894 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 748 259 13 47 chr4 124979846 124980157 -59308505 + L2 LINE L2 2770 3063 -250 263 170 32 32 chr4 124980286 124980380 -59308282 + (TA)n Simple_repeat Simple_repeat 2 95 0 2727 201 10 22 chr4 124980380 124980972 -59307690 + L1MC1 LINE L1 5745 6329 -4 31 26 0 0 chr4 124981376 124981414 -59307248 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr4 124981585 124981613 -59307049 + AT_rich Low_complexity Low_complexity 1 28 0 1800 191 70 22 chr4 124983287 124983700 -59304962 - Tigger2a DNA MER2_type -1 433 1 408 257 48 70 chr4 124983974 124984161 -59304501 - MIR SINE MIR -5 257 75 15228 110 25 6 chr4 124985861 124988457 -59300205 + Charlie3 DNA MER1_type 1 2705 -5 1698 122 0 4 chr4 124988608 124988845 -59299817 - AluSq SINE Alu -77 236 1 1289 202 16 40 chr4 124989240 124989493 -59299169 + Tigger7 DNA MER2_type 1 247 -2240 231 114 0 0 chr4 124989507 124989542 -59299120 + (TA)n Simple_repeat Simple_repeat 1 35 0 503 230 9 26 chr4 124989551 124989664 -59298998 + Tigger7 DNA MER2_type 2377 2487 0 618 346 68 25 chr4 124989935 124990302 -59298360 - L2 LINE L2 0 3313 2931 221 109 22 0 chr4 124990421 124990467 -59298195 + T-rich Low_complexity Low_complexity 2 48 0 10937 201 27 39 chr4 124990683 124993242 -59295420 - L1PA16 LINE L1 -20 6849 4371 231 36 0 0 chr4 124993242 124993270 -59295392 + (TTG)n Simple_repeat Simple_repeat 3 30 0 10937 201 27 39 chr4 124993270 124994517 -59294145 - L1PA16 LINE L1 -2498 4371 3110 493 256 0 0 chr4 124994509 124994630 -59294032 - L1PA16 LINE L1 -3987 2862 2742 * 963 231 22 48 chr4 124994630 124994898 -59293764 + MSTD LTR MaLR 136 396 0 2616 176 43 83 chr4 124994898 124995733 -59292929 + L1MC1 LINE L1 5538 6333 0 4909 86 12 1 chr4 124995734 124996410 -59292252 + L1PA10 LINE L1 5476 6158 -10 1898 116 14 14 chr4 124996449 124996733 -59291929 + AluSq SINE Alu 1 284 -29 1088 177 17 13 chr4 124997789 124998026 -59290636 - L1MC3 LINE L1 0 7785 7548 559 223 8 0 chr4 124998126 124998247 -59290415 - L1MC3 LINE L1 -387 7398 7277 * 1767 262 32 22 chr4 124998245 124998837 -59289825 - L1MCa LINE L1 -1887 4539 3942 555 183 17 8 chr4 124998876 124998996 -59289666 - MER65A LTR ERV1 0 445 325 5166 141 22 21 chr4 124999118 124999830 -59288832 - L1PA16 LINE L1 -9 6157 5442 2035 148 3 3 chr4 124999830 125000141 -59288521 - AluSx SINE Alu -1 311 1 5166 141 22 21 chr4 125000141 125000423 -59288239 - L1PA16 LINE L1 -724 5442 5162 840 240 36 10 chr4 125000427 125000623 -59288039 - MER65B LTR ERV1 -330 201 1 * 2039 200 51 87 chr4 125000623 125001206 -59287456 - MER77 LTR ERV1 -43 562 1 2455 269 61 60 chr4 125001206 125001868 -59286794 - L1MCa LINE L1 -2484 3942 3282 898 70 0 0 chr4 125001868 125001982 -59286680 - L1PA7 LINE L1 -4 6150 6037 2455 269 61 60 chr4 125001982 125003170 -59285492 - L1MCa LINE L1 -3144 3282 2049 291 130 0 0 chr4 125003230 125003284 -59285378 + (TA)n Simple_repeat Simple_repeat 2 55 0 1774 127 0 8 chr4 125003868 125004135 -59284527 - AluSx SINE Alu -17 295 31 2044 123 3 30 chr4 125005042 125005344 -59283318 - AluSg SINE Alu -16 294 1 207 0 0 0 chr4 125006538 125006561 -59282101 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 183 364 0 0 chr4 125006804 125006859 -59281803 - L2 LINE L2 -7 3265 3211 180 0 0 0 chr4 125006999 125007019 -59281643 + (A)n Simple_repeat Simple_repeat 1 20 0 227 327 19 9 chr4 125007206 125007313 -59281349 + L1ME4a LINE L1 5512 5619 -502 233 325 24 0 chr4 125007356 125007439 -59281223 + L2 LINE L2 3188 3272 0 362 313 71 17 chr4 125007439 125007679 -59280983 + L1ME4a LINE L1 5694 5946 -175 660 283 18 31 chr4 125008841 125009064 -59279598 + MER58A DNA MER1_type 4 223 -1 249 163 0 0 chr4 125009621 125009670 -59278992 + (TA)n Simple_repeat Simple_repeat 2 50 0 554 246 158 0 chr4 125010086 125010326 -59278336 + HsTC2 DNA Tc2 1613 1890 -8 822 300 47 30 chr4 125010331 125010858 -59277804 + L1ME3A LINE L1 564 1099 -5020 536 218 77 18 chr4 125010940 125011110 -59277552 + HsTC2 DNA Tc2 1569 1748 -150 225 254 15 15 chr4 125011218 125011285 -59277377 + (TA)n Simple_repeat Simple_repeat 1 67 0 230 188 31 42 chr4 125011299 125011395 -59277267 + (TATAA)n Simple_repeat Simple_repeat 1 95 0 243 204 0 0 chr4 125011405 125011459 -59277203 + (TA)n Simple_repeat Simple_repeat 1 54 0 353 289 48 24 chr4 125011485 125011734 -59276928 + L1ME3A LINE L1 2422 2676 -3453 326 280 157 24 chr4 125011755 125012041 -59276621 - L2 LINE L2 -1108 2206 1804 1983 106 0 0 chr4 125012245 125012567 -59276095 - AluY SINE Alu 0 322 1 246 272 84 24 chr4 125012603 125012816 -59275846 + L1ME3A LINE L1 2951 3176 -2953 330 311 50 54 chr4 125013169 125013429 -59275233 + L1ME3A LINE L1 5665 5923 -230 221 233 33 33 chr4 125013520 125013610 -59275052 + (TAAAG)n Simple_repeat Simple_repeat 4 93 0 323 243 18 30 chr4 125013671 125013840 -59274822 + GA-rich Low_complexity Low_complexity 5 171 0 22 0 0 0 chr4 125015968 125015990 -59272672 + AT_rich Low_complexity Low_complexity 1 22 0 249 108 0 0 chr4 125016740 125016777 -59271885 + (A)n Simple_repeat Simple_repeat 1 37 0 300 53 0 0 chr4 125017107 125017145 -59271517 + (TG)n Simple_repeat Simple_repeat 1 38 0 264 231 102 46 chr4 125017826 125017934 -59270728 + MIR SINE MIR 89 202 -60 25 31 0 0 chr4 125018810 125018842 -59269820 + AT_rich Low_complexity Low_complexity 1 32 0 253 125 45 45 chr4 125019040 125019142 -59269520 + (TATAA)n Simple_repeat Simple_repeat 1 102 0 3405 116 7 42 chr4 125020541 125021086 -59267576 - MER1A DNA MER1_type 0 527 2 435 289 7 14 chr4 125021427 125021569 -59267093 - MIR SINE MIR -35 227 87 434 352 57 5 chr4 125022553 125022763 -59265899 + MIR SINE MIR 13 233 -29 382 69 17 60 chr4 125023197 125023313 -59265349 + (TTTA)n Simple_repeat Simple_repeat 4 114 0 26 0 0 0 chr4 125023313 125023339 -59265323 + AT_rich Low_complexity Low_complexity 1 26 0 619 160 19 0 chr4 125025129 125025235 -59263427 + HY1 scRNA scRNA 2 109 -3 23 0 0 0 chr4 125025572 125025595 -59263067 + AT_rich Low_complexity Low_complexity 1 23 0 27 81 0 0 chr4 125025755 125025817 -59262845 + AT_rich Low_complexity Low_complexity 1 62 0 2021 119 3 3 chr4 125025817 125026103 -59262559 - AluSc SINE Alu -23 286 1 208 388 12 12 chr4 125026270 125026355 -59262307 - L2 LINE L2 -3 3269 3185 236 30 30 0 chr4 125026434 125026467 -59262195 + (TC)n Simple_repeat Simple_repeat 1 34 0 659 341 101 35 chr4 125026840 125027677 -59260985 - L2 LINE L2 -210 3062 2172 185 400 43 0 chr4 125027877 125027992 -59260670 - L2 LINE L2 -643 2671 2552 335 115 0 0 chr4 125028109 125028161 -59260501 - L1PA13 LINE L1 -8 6155 6104 1358 141 26 14 chr4 125028161 125028451 -59260211 + MER1B DNA MER1_type 1 339 0 5645 98 15 17 chr4 125028451 125029421 -59259241 - L1PA13 LINE L1 -52 6111 5145 646 259 82 56 chr4 125029556 125029788 -59258874 - MIR SINE MIR -10 252 15 383 56 19 0 chr4 125030796 125030850 -59257812 + (TA)n Simple_repeat Simple_repeat 1 55 0 183 80 0 0 chr4 125031050 125031075 -59257587 + (GA)n Simple_repeat Simple_repeat 1 25 0 919 169 6 23 chr4 125031603 125031775 -59256887 + AluSg/x SINE Alu 142 310 0 2114 183 27 5 chr4 125031912 125032354 -59256308 - L1MB3 LINE L1 -7 6176 5725 302 290 80 29 chr4 125032537 125032675 -59255987 - MIR SINE MIR -4 258 114 200 288 45 0 chr4 125032724 125032790 -59255872 + L2 LINE L2 3203 3271 -1 2203 113 0 7 chr4 125033173 125033482 -59255180 + AluSq SINE Alu 1 307 -6 31 68 0 0 chr4 125033600 125033659 -59255003 + AT_rich Low_complexity Low_complexity 1 59 0 36 53 0 0 chr4 125034011 125034068 -59254594 + AT_rich Low_complexity Low_complexity 1 57 0 361 339 0 0 chr4 125034217 125034326 -59254336 + L2 LINE L2 3204 3312 -1 416 186 0 0 chr4 125034374 125034444 -59254218 + AluJ/FLAM SINE Alu 1 70 -232 194 237 34 34 chr4 125034547 125034606 -59254056 + MIR SINE MIR 204 262 0 348 200 0 0 chr4 125036213 125036283 -59252379 - Tigger1 DNA MER2_type -2348 70 1 22 35 0 0 chr4 125036356 125036385 -59252277 + AT_rich Low_complexity Low_complexity 1 29 0 1965 84 12 81 chr4 125036616 125036936 -59251726 + AluY SINE Alu 1 298 -13 23 33 0 0 chr4 125037996 125038026 -59250636 + AT_rich Low_complexity Low_complexity 1 30 0 218 271 56 56 chr4 125038487 125038594 -59250068 + L3 LINE CR1 1470 1576 -1 189 0 0 0 chr4 125038876 125038897 -59249765 + (T)n Simple_repeat Simple_repeat 1 21 0 1126 208 9 0 chr4 125041851 125042072 -59246590 + MER58A DNA MER1_type 1 223 -1 1758 127 83 24 chr4 125042388 125042727 -59245935 + MER46B DNA MER2_type 2 235 -1 286 398 45 5 chr4 125042821 125043042 -59245620 - MIR SINE MIR -18 244 15 1571 179 32 55 chr4 125044102 125044449 -59244213 - MSTD LTR MaLR -2 394 56 230 143 0 0 chr4 125046272 125046314 -59242348 - L1MC4 LINE L1 -1339 6703 6662 1198 84 18 114 chr4 125049822 125050049 -59238613 - AluY SINE Alu -106 205 1 13478 154 9 8 chr4 125050381 125052623 -59236039 + Tigger1 DNA MER2_type 1 2243 -175 33 43 0 0 chr4 125053347 125053394 -59235268 + AT_rich Low_complexity Low_complexity 1 47 0 1942 126 48 0 chr4 125053642 125053935 -59234727 - AluSq SINE Alu -6 307 1 196 286 74 0 chr4 125054510 125054585 -59234077 - MIR SINE MIR -107 101 38 2428 59 0 10 chr4 125054741 125055044 -59233618 + AluY SINE Alu 1 300 -11 226 197 51 51 chr4 125055122 125055300 -59233362 + (TA)n Simple_repeat Simple_repeat 2 179 0 188 310 35 0 chr4 125056654 125056712 -59231950 + MIR SINE MIR 64 123 -85 1647 230 3 93 chr4 125056986 125057329 -59231333 + L1PA5 LINE L1 5841 6152 -2 255 190 13 51 chr4 125057735 125057814 -59230848 + A-rich Low_complexity Low_complexity 2 77 0 320 267 75 17 chr4 125058937 125059057 -59229605 - L2 LINE L2 -4 3309 3183 4086 94 5 0 chr4 125060991 125061568 -59227094 + L1PA14 LINE L1 5580 6159 -2 26 0 0 0 chr4 125061776 125061802 -59226860 + AT_rich Low_complexity Low_complexity 1 26 0 25 65 0 0 chr4 125063351 125063397 -59225265 + AT_rich Low_complexity Low_complexity 1 46 0 25 51 0 0 chr4 125064212 125064251 -59224411 + AT_rich Low_complexity Low_complexity 1 39 0 312 27 0 0 chr4 125064694 125064731 -59223931 + (TG)n Simple_repeat Simple_repeat 1 37 0 193 208 19 38 chr4 125065587 125065640 -59223022 + MIR SINE MIR 113 164 -98 181 217 43 22 chr4 125066028 125066074 -59222588 + MIR SINE MIR 152 198 -64 358 311 65 85 chr4 125066175 125066423 -59222239 + MIR SINE MIR 20 262 0 191 146 24 0 chr4 125066915 125066956 -59221706 + (CTA)n Simple_repeat Simple_repeat 1 42 0 392 274 65 36 chr4 125066965 125066999 -59221663 - MIR SINE MIR -12 250 218 2073 123 3 3 chr4 125066999 125067299 -59221363 - AluSq SINE Alu -13 300 1 392 274 65 36 chr4 125067299 125067432 -59221230 - MIR SINE MIR -44 218 78 2232 102 3 0 chr4 125068131 125068425 -59220237 - AluSc SINE Alu -14 295 1 33 66 0 0 chr4 125070813 125070874 -59217788 + AT_rich Low_complexity Low_complexity 1 61 0 204 40 0 0 chr4 125072079 125072104 -59216558 + (TA)n Simple_repeat Simple_repeat 2 26 0 363 188 49 20 chr4 125072409 125072517 -59216145 - L1ME4a LINE L1 -3 6093 1243 335 285 112 33 chr4 125072533 125072747 -59215915 - L1ME LINE L1 -309 5812 5582 203 315 0 0 chr4 125072999 125073053 -59215609 + L2 LINE L2 2444 2497 -817 2082 121 7 0 chr4 125073061 125073367 -59215295 - AluSg SINE Alu -2 308 1 937 293 140 19 chr4 125073368 125073925 -59214737 + L2 LINE L2 2688 3309 -4 268 180 0 0 chr4 125075367 125075417 -59213245 - L1MB7 LINE L1 -24 6160 6111 23 33 0 0 chr4 125076835 125076865 -59211797 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 125077122 125077144 -59211518 + AT_rich Low_complexity Low_complexity 1 22 0 867 218 96 11 chr4 125077447 125077635 -59211027 + MER20 DNA MER1_type 1 204 -15 180 0 0 0 chr4 125078476 125078496 -59210166 + (T)n Simple_repeat Simple_repeat 1 20 0 191 152 22 0 chr4 125078542 125078588 -59210074 + CT-rich Low_complexity Low_complexity 2 48 0 387 73 0 0 chr4 125078588 125078643 -59210019 + (CA)n Simple_repeat Simple_repeat 2 56 0 315 49 0 0 chr4 125078996 125079037 -59209625 + (CA)n Simple_repeat Simple_repeat 2 42 0 1718 163 0 3 chr4 125079495 125079778 -59208884 - Tigger3b DNA MER2_type 0 1232 951 1204 138 5 5 chr4 125079807 125079996 -59208666 - AluJb SINE Alu -33 279 91 4694 119 63 18 chr4 125080000 125080815 -59207847 - Tigger3b DNA MER2_type -305 926 76 512 343 137 30 chr4 125083236 125084031 -59204631 - L2 LINE L2 -534 2780 1901 1788 175 117 17 chr4 125085322 125085733 -59202929 + LTR47A LTR ERVL 1 452 0 282 145 116 14 chr4 125086007 125086076 -59202586 + MER41A LTR ERV1 398 473 -81 29 0 0 0 chr4 125086443 125086472 -59202190 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr4 125086496 125086525 -59202137 + AT_rich Low_complexity Low_complexity 1 29 0 2281 52 0 39 chr4 125087009 125087314 -59201348 - AluY SINE Alu -18 293 1 863 328 62 15 chr4 125087404 125087794 -59200868 - L2 LINE L2 -30 3283 2876 180 0 0 0 chr4 125088037 125088057 -59200605 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2153 114 0 7 chr4 125090542 125090848 -59197814 + AluSq SINE Alu 1 304 -9 359 362 52 17 chr4 125091783 125092015 -59196647 - L2 LINE L2 -252 3061 2822 212 303 141 0 chr4 125093267 125093366 -59195296 - MIR SINE MIR -98 164 52 2468 117 19 6 chr4 125093839 125094198 -59194464 - THE1B LTR MaLR 0 364 1 230 324 186 15 chr4 125094288 125094423 -59194239 - MIR SINE MIR -74 188 31 344 284 10 39 chr4 125094652 125094754 -59193908 + MIR SINE MIR 140 238 -24 441 97 67 0 chr4 125095886 125096020 -59192642 + (TG)n Simple_repeat Simple_repeat 2 144 0 788 303 69 25 chr4 125097463 125097824 -59190838 + MLT1I LTR MaLR 60 409 0 21 0 0 0 chr4 125097990 125098011 -59190651 + AT_rich Low_complexity Low_complexity 1 21 0 325 212 12 0 chr4 125098598 125098683 -59189979 + (TA)n Simple_repeat Simple_repeat 1 86 0 2602 110 5 0 chr4 125100425 125100798 -59187864 - THE1C LTR MaLR 0 375 1 237 231 289 0 chr4 125101187 125101291 -59187371 - L2 LINE L2 0 3272 3139 2604 180 20 12 chr4 125101363 125101852 -59186810 - MLT1D LTR MaLR -8 497 5 560 285 35 6 chr4 125104472 125104644 -59184018 - MER5B DNA MER1_type 0 178 2 13849 150 28 18 chr4 125105152 125107378 -59181284 - Tigger1 DNA MER2_type 0 2418 167 1728 162 149 11 chr4 125107378 125107754 -59180908 - MSTA LTR MaLR 0 428 1 13849 150 28 18 chr4 125107754 125107923 -59180739 - Tigger1 DNA MER2_type -2251 167 1 523 322 86 20 chr4 125108461 125108706 -59179956 + MIR SINE MIR 1 261 -1 25 0 0 0 chr4 125108923 125108948 -59179714 + AT_rich Low_complexity Low_complexity 1 25 0 223 196 0 22 chr4 125110013 125110059 -59178603 + CT-rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr4 125111601 125111624 -59177038 + AT_rich Low_complexity Low_complexity 1 23 0 225 233 30 98 chr4 125111625 125111758 -59176904 - L1ME3A LINE L1 -31 6139 6016 268 247 86 0 chr4 125111889 125111982 -59176680 - L1ME3A LINE L1 -896 5250 5150 3897 222 98 53 chr4 125111987 125113516 -59175146 - L1P2 LINE L1 -671 5484 4026 264 30 0 0 chr4 125113516 125113549 -59175113 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1785 191 172 71 chr4 125113553 125114303 -59174359 + LTR1B LTR ERV1 1 826 0 3897 222 98 53 chr4 125114303 125115433 -59173229 - L1P2 LINE L1 -2131 4024 2670 870 134 0 15 chr4 125115546 125115704 -59172958 + FLAM_C SINE Alu 2 133 0 907 318 79 48 chr4 125115785 125116764 -59171898 + L2 LINE L2 2312 3312 -1 183 273 0 0 chr4 125117310 125117354 -59171308 + MIR SINE MIR 171 214 -48 36 0 0 0 chr4 125117375 125117411 -59171251 + AT_rich Low_complexity Low_complexity 1 36 0 270 236 85 20 chr4 125117505 125117638 -59171024 + L1P5 LINE L1 5467 5606 -559 32 26 0 0 chr4 125120009 125120048 -59168614 + AT_rich Low_complexity Low_complexity 1 39 0 4414 273 84 6 chr4 125120109 125121253 -59167409 + L1 LINE L1 3721 4953 -1193 602 275 20 0 chr4 125121262 125121411 -59167251 + MLT1A2 LTR MaLR 220 371 -3 25 0 0 0 chr4 125121849 125121874 -59166788 + AT_rich Low_complexity Low_complexity 1 25 0 270 81 0 0 chr4 125122100 125122137 -59166525 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 1737 162 0 14 chr4 125122137 125122427 -59166235 - AluJb SINE Alu -26 286 1 6582 152 13 39 chr4 125122513 125124205 -59164457 - L1MA2 LINE L1 0 6304 4669 507 224 0 0 chr4 125124200 125124316 -59164346 + L1 LINE L1 2269 2384 -3762 * 931 198 18 18 chr4 125124308 125124530 -59164132 - L1MA2 LINE L1 -3522 2624 2403 541 303 71 32 chr4 125125305 125125585 -59163077 - MLT1H1 LTR MaLR -207 348 68 1188 222 57 92 chr4 125126158 125126681 -59161981 + MLT1D LTR MaLR 1 505 0 1406 224 32 35 chr4 125126820 125127191 -59161471 - MLT1A2 LTR MaLR -4 370 1 1431 211 68 0 chr4 125127339 125127661 -59161001 - MER2 DNA MER2_type 0 344 1 411 299 45 8 chr4 125127805 125127939 -59160723 + MIR SINE MIR 86 224 -38 2227 94 0 25 chr4 125128666 125128984 -59159678 + AluSp SINE Alu 1 310 -3 448 314 26 86 chr4 125129262 125129679 -59158983 + L1M3d LINE L1 413 804 -5499 644 168 0 0 chr4 125129794 125129901 -59158761 + AluSp/q SINE Alu 205 311 -2 2753 258 53 44 chr4 125129948 125131686 -59156976 + L1M3d LINE L1 804 2509 -3873 1436 183 53 0 chr4 125131699 125132000 -59156662 + L1MB2 LINE L1 5855 6171 0 315 353 105 42 chr4 125132249 125132439 -59156223 + MIR SINE MIR 18 219 -43 225 94 0 0 chr4 125133547 125133579 -59155083 + (TA)n Simple_repeat Simple_repeat 1 32 0 357 362 87 24 chr4 125133606 125133893 -59154769 - L2 LINE L2 0 3313 3009 1170 258 147 68 chr4 125133998 125134348 -59154314 + MLT1E3 LTR MaLR 1 414 -210 345 62 0 0 chr4 125134348 125134396 -59154266 + (CA)n Simple_repeat Simple_repeat 1 48 0 1170 258 147 68 chr4 125134396 125134623 -59154039 + MLT1E3 LTR MaLR 414 622 -2 279 0 0 0 chr4 125134884 125134915 -59153747 + (CA)n Simple_repeat Simple_repeat 2 32 0 253 300 40 0 chr4 125135153 125135253 -59153409 + L1MC5 LINE L1 7342 7445 -516 1856 135 31 55 chr4 125135307 125135691 -59152971 + THE1C LTR MaLR 1 375 0 714 234 96 18 chr4 125135868 125136034 -59152628 - MLT1A1 LTR MaLR 0 365 187 1744 145 0 77 chr4 125136034 125136407 -59152255 - MER4A LTR ERV1 0 664 262 349 118 43 118 chr4 125136407 125136500 -59152162 - MER4A LTR ERV1 -565 99 14 554 128 12 0 chr4 125136562 125136648 -59152014 + MLT1A1 LTR MaLR 267 353 -12 390 335 59 6 chr4 125136845 125137015 -59151647 + MIR SINE MIR 84 262 0 1795 219 132 30 chr4 125137192 125137797 -59150865 - LTR28 LTR ERV1 0 1020 289 230 184 0 0 chr4 125137836 125137874 -59150788 - MER61B LTR ERV1 -286 139 102 * 775 194 22 33 chr4 125137851 125138031 -59150631 - LTR28 LTR ERV1 -842 178 1 26 64 0 0 chr4 125138143 125138190 -59150472 + AT_rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chr4 125138363 125138392 -59150270 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr4 125138398 125138434 -59150228 + AT_rich Low_complexity Low_complexity 1 36 0 287 275 84 76 chr4 125140234 125140365 -59148297 + MLT1J LTR MaLR 11 142 -369 196 225 25 0 chr4 125140405 125140445 -59148217 + MIR SINE MIR 201 241 -21 327 188 40 40 chr4 125140623 125140724 -59147938 + MLT1J LTR MaLR 378 478 -33 279 79 0 0 chr4 125141751 125141789 -59146873 + (TG)n Simple_repeat Simple_repeat 1 38 0 945 195 56 15 chr4 125141885 125142152 -59146510 - L1MC5 LINE L1 -77 7884 7607 184 157 43 29 chr4 125143058 125143198 -59145464 + (TA)n Simple_repeat Simple_repeat 1 142 0 188 0 74 0 chr4 125143365 125143392 -59145270 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 22 35 0 0 chr4 125144772 125144801 -59143861 + AT_rich Low_complexity Low_complexity 1 29 0 5076 167 47 35 chr4 125145206 125145417 -59143245 - L1MC1 LINE L1 0 6333 6126 198 71 0 0 chr4 125145417 125145445 -59143217 + (TATG)n Simple_repeat Simple_repeat 2 29 0 2083 92 15 0 chr4 125145449 125145722 -59142940 - AluSx SINE Alu -33 279 3 5076 167 47 35 chr4 125145722 125146414 -59142248 - L1MC1 LINE L1 -209 6124 5406 1537 207 65 45 chr4 125146414 125146796 -59141866 - MLT1B LTR MaLR 0 390 1 5076 167 47 35 chr4 125146796 125147035 -59141627 - L1MC1 LINE L1 -927 5406 5171 251 304 92 46 chr4 125147197 125147437 -59141225 - L1MC4a LINE L1 -1880 5928 5678 191 125 25 0 chr4 125147477 125147517 -59141145 + (TG)n Simple_repeat Simple_repeat 2 42 0 32 0 0 0 chr4 125147711 125147743 -59140919 + AT_rich Low_complexity Low_complexity 1 32 0 2202 94 50 0 chr4 125148692 125148990 -59139672 - AluSp SINE Alu 0 313 1 27 29 0 0 chr4 125149068 125149102 -59139560 + AT_rich Low_complexity Low_complexity 1 34 0 4376 105 60 8 chr4 125150104 125150836 -59137826 - L1MA3 LINE L1 0 6305 5536 207 305 0 17 chr4 125150848 125150907 -59137755 - L2 LINE L2 -9 3263 3206 6425 207 61 11 chr4 125151187 125152485 -59136177 + L1M1 LINE L1 5 1367 -6198 671 204 6 108 chr4 125152595 125152887 -59135775 + LTR21B LTR ERV1 118 438 0 2234 186 11 0 chr4 125152887 125153263 -59135399 + L1M1 LINE L1 1363 1742 -5823 1383 250 20 5 chr4 125153259 125153651 -59135011 + L1M1 LINE L1 4079 4476 -3089 * 7148 54 3 0 chr4 125153659 125154984 -59133678 - L1PA5 LINE L1 -1 6153 4832 8220 66 13 0 chr4 125154986 125156064 -59132598 + L1PA5 LINE L1 3724 4815 -1331 7623 179 8 44 chr4 125156055 125156102 -59132560 + L1M1 LINE L1 4479 4526 -3039 * 1491 183 23 46 chr4 125156102 125156408 -59132254 - AluJo SINE Alu -13 299 1 7623 179 8 44 chr4 125156408 125158115 -59130547 + L1M1 LINE L1 4526 6171 -1394 441 110 18 101 chr4 125158187 125158244 -59130418 + L1M1 LINE L1 6158 6203 -1362 2277 97 0 0 chr4 125158244 125158532 -59130130 + AluSg SINE Alu 1 288 -22 441 110 18 101 chr4 125158532 125158583 -59130079 + L1M1 LINE L1 6203 6257 -1308 3713 33 0 2 chr4 125158583 125159032 -59129630 + LTR7 LTR ERV1 1 448 -2 20426 92 60 26 chr4 125159034 125162231 -59126431 + HERVH LTR ERV1 1 3308 -4405 3423 107 0 6 chr4 125162209 125162714 -59125948 + HERVH LTR ERV1 3492 3993 -3720 * 4330 142 1 1 chr4 125162716 125163378 -59125284 + HERVH LTR ERV1 4488 5149 -2564 1384 108 38 0 chr4 125163379 125163591 -59125071 + HERVH LTR ERV1 5600 5819 -1894 * 2435 82 45 13 chr4 125163589 125163969 -59124693 + HERVH LTR ERV1 7322 7713 0 3488 53 0 7 chr4 125163969 125164420 -59124242 + LTR7 LTR ERV1 1 448 -2 1596 214 35 3 chr4 125164422 125164796 -59123866 + L1M1 LINE L1 6253 6638 -927 723 177 11 11 chr4 125165275 125165364 -59123298 + GA-rich Low_complexity Low_complexity 3 94 -83 2778 183 25 81 chr4 125165364 125165433 -59123229 - LTR8 LTR ERV1 -2 689 618 2240 82 3 13 chr4 125165433 125165736 -59122926 + AluY SINE Alu 3 302 -9 2778 183 25 81 chr4 125165736 125166394 -59122268 - LTR8 LTR ERV1 -73 618 3 723 177 11 11 chr4 125166394 125166479 -59122183 + GA-rich Low_complexity Low_complexity 93 177 0 183 239 0 0 chr4 125166493 125166539 -59122123 + GA-rich Low_complexity Low_complexity 3 48 0 1785 212 20 8 chr4 125167542 125167933 -59120729 + MSTD LTR MaLR 1 396 0 1095 226 28 8 chr4 125167935 125168187 -59120475 + THE1C-int LTR MaLR 2 258 -1477 1735 154 18 11 chr4 125168187 125168473 -59120189 + AluJo SINE Alu 1 288 -24 286 190 30 20 chr4 125168475 125168575 -59120087 + (TA)n Simple_repeat Simple_repeat 2 102 0 5734 261 25 31 chr4 125168575 125168905 -59119757 + THE1C-int LTR MaLR 247 577 -1158 2758 104 0 3 chr4 125168905 125169281 -59119381 + THE1C LTR MaLR 1 375 0 5734 261 25 31 chr4 125169281 125170448 -59118214 + THE1C-int LTR MaLR 577 1735 0 1291 221 57 46 chr4 125170448 125170617 -59118045 + MSTD LTR MaLR 1 167 -229 1995 151 3 3 chr4 125170617 125170928 -59117734 + AluSx SINE Alu 1 311 -1 1291 221 57 46 chr4 125170928 125171125 -59117537 + MSTD LTR MaLR 167 371 -25 650 211 135 0 chr4 125171537 125171670 -59116992 + AluJo SINE Alu 10 160 -152 26 64 0 0 chr4 125171711 125171758 -59116904 + AT_rich Low_complexity Low_complexity 1 47 0 2823 3 0 0 chr4 125172213 125172517 -59116145 - AluYa8 SINE Alu -6 304 1 1823 290 88 21 chr4 125173537 125173598 -59115064 + L2 LINE L2 2354 2409 -904 1827 193 15 47 chr4 125173598 125174003 -59114659 + MSTD LTR MaLR 1 392 -4 1823 290 88 21 chr4 125174003 125174819 -59113843 + L2 LINE L2 2409 3305 -8 265 163 0 58 chr4 125175753 125175839 -59112823 + LTR66 LTR ERVL 394 474 -136 2153 112 0 29 chr4 125177758 125178070 -59110592 + AluSx SINE Alu 1 303 -9 243 214 10 133 chr4 125180338 125180436 -59108226 - MIR3 SINE MIR -32 176 91 21 36 0 0 chr4 125180681 125180709 -59107953 + AT_rich Low_complexity Low_complexity 1 28 0 5680 85 5 10 chr4 125181723 125182503 -59106159 - L1PA8A LINE L1 -12 6119 5344 22 0 0 0 chr4 125183884 125183906 -59104756 + AT_rich Low_complexity Low_complexity 1 22 0 200 111 22 44 chr4 125185627 125185672 -59102990 + A-rich Low_complexity Low_complexity 4 47 0 2105 138 12 0 chr4 125185932 125186265 -59102397 + MER1B DNA MER1_type 1 337 0 2020 114 29 0 chr4 125186547 125186850 -59101812 + AluSx SINE Alu 1 311 0 2253 104 0 3 chr4 125187794 125188091 -59100571 + AluSq SINE Alu 1 296 -17 321 26 0 0 chr4 125188091 125188129 -59100533 + (TA)n Simple_repeat Simple_repeat 2 39 0 230 264 14 14 chr4 125188245 125188317 -59100345 - L2 LINE L2 0 3272 3201 2522 195 39 2 chr4 125188421 125189115 -59099547 + L1MB7 LINE L1 5106 5828 -356 14199 146 28 8 chr4 125189405 125191769 -59096893 + Tigger1 DNA MER2_type 8 2418 0 2354 82 3 0 chr4 125192926 125193220 -59095442 + AluSp SINE Alu 3 297 -16 2144 136 0 0 chr4 125193357 125193667 -59094995 + AluSx SINE Alu 1 310 -2 29 0 0 0 chr4 125193918 125193947 -59094715 + AT_rich Low_complexity Low_complexity 1 29 0 407 295 49 8 chr4 125194735 125194857 -59093805 - L2 LINE L2 0 3313 3187 2047 98 53 0 chr4 125196214 125196499 -59092163 - AluSp SINE Alu -13 300 1 1489 73 4 69 chr4 125196509 125196742 -59091920 - L1PA6 LINE L1 -3 6151 5934 215 279 38 25 chr4 125197520 125197599 -59091063 + MER5B DNA MER1_type 1 80 -98 31 0 0 0 chr4 125198017 125198048 -59090614 + AT_rich Low_complexity Low_complexity 1 31 0 355 213 12 0 chr4 125198467 125198547 -59090115 + L1MB7 LINE L1 6081 6161 -23 211 319 125 28 chr4 125198967 125199111 -59089551 - MIR3 SINE MIR -12 196 39 545 314 14 14 chr4 125199282 125199489 -59089173 + MIR SINE MIR 24 230 -32 23 33 0 0 chr4 125199889 125199919 -59088743 + AT_rich Low_complexity Low_complexity 1 30 0 253 344 78 26 chr4 125200185 125200377 -59088285 + MIR SINE MIR 19 220 -42 200 392 107 25 chr4 125201593 125202041 -59086621 - L2 LINE L2 -643 2671 2261 306 0 0 0 chr4 125202041 125202075 -59086587 + (TC)n Simple_repeat Simple_repeat 1 34 0 270 0 0 0 chr4 125202074 125202104 -59086558 + (CA)n Simple_repeat Simple_repeat 1 30 0 * 200 392 107 25 chr4 125202075 125202132 -59086530 - L2 LINE L2 -1053 2261 2156 207 244 0 0 chr4 125202700 125202741 -59085921 + L2 LINE L2 3219 3259 -13 188 336 99 15 chr4 125202741 125202872 -59085790 - MIR SINE MIR -81 181 40 2330 77 0 26 chr4 125203046 125203359 -59085303 + AluY SINE Alu 1 305 -6 374 335 98 9 chr4 125204721 125204936 -59083726 - MIR SINE MIR -11 251 18 1295 296 121 45 chr4 125205322 125205468 -59083194 + L2 LINE L2 2016 2149 -1165 2147 111 13 91 chr4 125205468 125205531 -59083131 + THE1B LTR MaLR 1 67 -297 2176 117 0 0 chr4 125205531 125205821 -59082841 + AluSx SINE Alu 1 290 -22 2147 111 13 91 chr4 125205821 125206152 -59082510 + THE1B LTR MaLR 67 364 0 1295 296 121 45 chr4 125206152 125206482 -59082180 + L2 LINE L2 2149 2453 -861 1645 35 0 5 chr4 125206482 125206684 -59081978 - L1PA5 LINE L1 0 6154 5954 1295 296 121 45 chr4 125206684 125207023 -59081639 + L2 LINE L2 2453 2894 -420 994 299 104 20 chr4 125207589 125208040 -59080622 + MLT1H1 LTR MaLR 2 490 -65 29 0 0 0 chr4 125208040 125208069 -59080593 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr4 125209762 125209798 -59078864 + AT_rich Low_complexity Low_complexity 1 36 0 538 326 80 13 chr4 125210135 125210359 -59078303 - MIR SINE MIR 0 262 24 340 242 176 0 chr4 125210915 125211006 -59077656 + MIR SINE MIR 126 232 -30 1513 61 0 0 chr4 125212423 125212619 -59076043 - L1PA5 LINE L1 0 6154 5959 283 333 14 21 chr4 125212715 125212859 -59075803 + L2 LINE L2 2243 2385 -929 202 302 125 0 chr4 125212960 125213056 -59075606 - MIR SINE MIR -58 204 97 23 33 0 0 chr4 125213234 125213264 -59075398 + AT_rich Low_complexity Low_complexity 1 30 0 214 200 0 22 chr4 125213889 125213934 -59074728 + (TATG)n Simple_repeat Simple_repeat 3 46 0 2200 110 3 0 chr4 125214288 125214580 -59074082 - AluSq SINE Alu -20 293 1 395 168 21 11 chr4 125215302 125215397 -59073265 + L1MB3 LINE L1 6081 6176 -7 32 0 0 0 chr4 125215397 125215429 -59073233 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr4 125217134 125217158 -59071504 + AT_rich Low_complexity Low_complexity 1 24 0 253 212 61 0 chr4 125217366 125217432 -59071230 + MIR SINE MIR 131 200 -62 490 300 148 17 chr4 125217473 125217763 -59070899 + L2 LINE L2 2207 2534 -780 413 253 171 18 chr4 125217809 125217979 -59070683 + L2 LINE L2 3109 3304 -9 2253 133 5 29 chr4 125218043 125218427 -59070235 - THE1C LTR MaLR 0 375 1 9054 132 81 3 chr4 125218427 125219889 -59068773 - THE1C-int LTR MaLR 0 1580 5 2724 104 3 0 chr4 125219893 125220267 -59068395 - THE1C LTR MaLR 0 375 1 24 67 0 0 chr4 125220592 125220637 -59068025 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr4 125220682 125220703 -59067959 + AT_rich Low_complexity Low_complexity 1 21 0 380 367 41 18 chr4 125220707 125220876 -59067786 + MIR3 SINE MIR 10 182 -26 1769 135 59 3 chr4 125221382 125221671 -59066991 + AluSx SINE Alu 1 305 -7 21 82 0 0 chr4 125222104 125222153 -59066509 + AT_rich Low_complexity Low_complexity 1 49 0 543 281 37 123 chr4 125222216 125222671 -59065991 - L2 LINE L2 0 3313 2898 455 266 58 22 chr4 125222704 125222843 -59065819 + MER63 DNA MER1_type 14 783 -279 538 309 138 53 chr4 125222856 125223387 -59065275 - L2 LINE L2 -423 2891 2316 281 329 109 0 chr4 125223456 125223593 -59065069 - MIR SINE MIR -108 154 3 2184 114 3 0 chr4 125225635 125225933 -59062729 - AluSq SINE Alu -14 299 1 201 94 0 0 chr4 125228715 125228747 -59059915 + (CAAAT)n Simple_repeat Simple_repeat 3 34 0 189 304 108 20 chr4 125228978 125229080 -59059582 + MIR SINE MIR 77 187 -75 307 184 76 0 chr4 125229234 125229313 -59059349 - MIR SINE MIR -65 143 100 495 271 123 45 chr4 125229985 125230544 -59058118 - L2 LINE L2 -19 3294 2630 424 242 11 77 chr4 125230557 125230739 -59057923 - L2 LINE L2 0 3313 3144 395 304 51 7 chr4 125230777 125230915 -59057747 - L2 LINE L2 -1102 2212 2069 476 356 45 20 chr4 125230932 125231224 -59057438 - L2 LINE L2 -186 3127 2829 * 2672 295 39 29 chr4 125231220 125232126 -59056536 - L2 LINE L2 -675 2639 1725 407 315 127 19 chr4 125232411 125232624 -59056038 + MIR SINE MIR 19 254 -8 1675 172 43 0 chr4 125234230 125234509 -59054153 - AluSx SINE Alu -21 291 1 345 306 131 52 chr4 125234634 125234863 -59053799 + MIR SINE MIR 6 252 -10 2166 223 78 41 chr4 125235232 125236561 -59052101 + Charlie1a DNA MER1_type 1 1450 -5 255 324 48 9 chr4 125236836 125236941 -59051721 - L2 LINE L2 -6 3307 3199 27 0 0 0 chr4 125238315 125238342 -59050320 + AT_rich Low_complexity Low_complexity 1 27 0 35 24 0 0 chr4 125238516 125238558 -59050104 + AT_rich Low_complexity Low_complexity 1 42 0 1004 83 62 0 chr4 125245800 125245944 -59042718 - L1PA11 LINE L1 -4 6170 6018 736 201 0 0 chr4 125246248 125246387 -59042275 - FLAM_C SINE Alu -4 139 1 21 36 0 0 chr4 125246760 125246788 -59041874 + AT_rich Low_complexity Low_complexity 1 28 0 1939 91 58 25 chr4 125247267 125247564 -59041098 + AluY SINE Alu 1 306 0 2033 124 21 0 chr4 125247745 125248036 -59040626 - AluSx SINE Alu -14 298 2 2106 155 91 5 chr4 125248337 125248629 -59040033 + MSTA LTR MaLR 1 337 -91 3165 131 60 2 chr4 125248629 125249127 -59039535 + MER1A DNA MER1_type 1 527 0 2106 155 91 5 chr4 125249127 125249228 -59039434 + MSTA LTR MaLR 337 428 0 322 256 35 23 chr4 125249616 125249702 -59038960 - L2 LINE L2 -4 3309 3223 297 0 0 0 chr4 125249781 125249814 -59038848 + (CA)n Simple_repeat Simple_repeat 1 33 0 28 0 0 0 chr4 125250336 125250364 -59038298 + AT_rich Low_complexity Low_complexity 1 28 0 375 244 12 0 chr4 125251341 125251423 -59037239 + MIR SINE MIR 74 156 -106 256 240 8 78 chr4 125252074 125252203 -59036459 + MER112 DNA MER1_type 20 139 -121 2166 113 3 44 chr4 125252219 125252538 -59036124 - AluSx SINE Alu -6 306 1 37 86 0 0 chr4 125253169 125253250 -59035412 + AT_rich Low_complexity Low_complexity 1 81 0 268 261 60 45 chr4 125253833 125253967 -59034695 + HAL1 LINE L1 2328 2463 -44 22 0 0 0 chr4 125253987 125254009 -59034653 + AT_rich Low_complexity Low_complexity 1 22 0 2608 118 33 5 chr4 125255968 125256390 -59032272 - MER57B LTR ERV1 0 434 1 2147 111 0 10 chr4 125256882 125257179 -59031483 - AluY SINE Alu -13 298 5 3995 126 138 108 chr4 125257652 125258984 -59029678 - pTR5 LTR ERV1 0 2438 743 228 122 0 0 chr4 125259401 125259442 -59029220 + (TG)n Simple_repeat Simple_repeat 2 42 0 27 29 0 0 chr4 125261493 125261527 -59027135 + AT_rich Low_complexity Low_complexity 1 34 0 29 60 0 0 chr4 125261549 125261599 -59027063 + AT_rich Low_complexity Low_complexity 1 50 0 332 308 70 17 chr4 125261967 125262139 -59026523 + MLT1J2 LTR MaLR 55 235 -215 191 370 19 9 chr4 125262338 125262446 -59026216 - L2 LINE L2 -769 2545 2437 2480 209 28 17 chr4 125263681 125264218 -59024444 - MER67A LTR ERV1 0 543 1 26 50 0 0 chr4 125264424 125264464 -59024198 + AT_rich Low_complexity Low_complexity 1 40 0 185 209 23 0 chr4 125265382 125265425 -59023237 - L2 LINE L2 -9 3304 3261 209 231 0 19 chr4 125266910 125266962 -59021700 + A-rich Low_complexity Low_complexity 3 53 0 211 169 34 34 chr4 125267158 125267217 -59021445 + T-rich Low_complexity Low_complexity 3 61 0 2122 108 7 0 chr4 125267276 125267562 -59021100 + AluY SINE Alu 1 288 -23 2398 90 0 3 chr4 125267949 125268261 -59020401 + AluY SINE Alu 1 311 0 1197 186 44 102 chr4 125268322 125269043 -59019619 + LTR48 LTR ERV1 1 707 0 785 217 45 36 chr4 125269501 125269722 -59018940 - LTR48B LTR ERV1 -2 642 420 3780 131 16 40 chr4 125269789 125270469 -59018193 - MER4A LTR ERV1 0 664 1 477 281 8 8 chr4 125270918 125271039 -59017623 - LTR28 LTR ERV1 0 1020 900 1521 226 86 91 chr4 125271118 125271909 -59016753 - LTR1B LTR ERV1 -81 745 1 215 254 16 48 chr4 125273802 125273865 -59014797 - MIR SINE MIR -84 178 118 739 270 112 81 chr4 125273888 125273935 -59014727 - LTR16A LTR ERVL -28 422 378 2138 129 7 0 chr4 125273935 125274245 -59014417 + AluSx SINE Alu 1 312 0 739 270 112 81 chr4 125274245 125274582 -59014080 - LTR16A LTR ERVL -72 378 26 2173 169 54 17 chr4 125274649 125275058 -59013604 + MSTB LTR MaLR 1 424 -2 838 222 131 16 chr4 125275620 125275872 -59012790 - MER110A LTR ERV1 -117 351 71 365 336 110 6 chr4 125275905 125276104 -59012558 + MIR SINE MIR 17 237 -25 368 288 43 65 chr4 125276594 125276778 -59011884 - L2 LINE L2 -1 3312 3133 213 39 0 0 chr4 125276806 125276832 -59011830 + (ATTAG)n Simple_repeat Simple_repeat 2 27 0 222 416 38 0 chr4 125277661 125277846 -59010816 + L3 LINE CR1 1219 1410 -167 2173 89 3 10 chr4 125278284 125278588 -59010074 - AluY SINE Alu -9 302 1 489 286 74 17 chr4 125278797 125278972 -59009690 + MIR SINE MIR 48 232 -30 35 0 0 0 chr4 125278994 125279029 -59009633 + AT_rich Low_complexity Low_complexity 1 35 0 598 344 90 56 chr4 125279055 125279557 -59009105 - L2 LINE L2 -313 3000 2472 21 0 0 0 chr4 125280483 125280504 -59008158 + AT_rich Low_complexity Low_complexity 1 21 0 3585 217 40 8 chr4 125281164 125281905 -59006757 - L1MD1 LINE L1 0 6242 5469 2371 94 0 0 chr4 125281905 125282202 -59006460 - AluSg SINE Alu -13 297 1 3585 217 40 8 chr4 125282202 125282309 -59006353 - L1MD1 LINE L1 -773 5469 5367 2147 203 22 22 chr4 125282309 125282753 -59005909 - MLT2B2 LTR ERVL 0 515 72 3894 139 21 66 chr4 125282756 125283578 -59005084 + LTR1 LTR ERV1 1 785 0 419 126 138 35 chr4 125283725 125283812 -59004850 + HUERS-P2 LTR ERV1 213 308 -2780 1289 114 0 25 chr4 125284018 125284220 -59004442 + AluSg/x SINE Alu 116 312 0 201 242 253 81 chr4 125284220 125284319 -59004343 + MER5A DNA MER1_type 74 189 0 24 0 0 0 chr4 125287055 125287079 -59001583 + AT_rich Low_complexity Low_complexity 1 24 0 1818 94 31 69 chr4 125287486 125287805 -59000857 + AluY SINE Alu 4 310 -1 3809 125 92 15 chr4 125289134 125289863 -58998799 - LTR1 LTR ERV1 0 785 1 232 200 33 67 chr4 125290203 125290263 -58998399 + L2 LINE L2 3250 3307 -6 211 357 64 38 chr4 125291268 125291425 -58997237 + MIR SINE MIR 68 228 -34 21 57 0 0 chr4 125291569 125291604 -58997058 + AT_rich Low_complexity Low_complexity 1 35 0 1960 129 7 0 chr4 125291943 125292248 -58996414 + AluSg SINE Alu 1 307 0 629 303 104 47 chr4 125292249 125292635 -58996027 - L2 LINE L2 -19 3294 2887 1311 192 163 29 chr4 125292657 125293006 -58995656 - MSTD LTR MaLR 0 396 1 2782 276 152 43 chr4 125293006 125293701 -58994961 - MSTD-int LTR MaLR 0 1735 884 1704 204 60 22 chr4 125293701 125294117 -58994545 - MSTB1 LTR MaLR 0 432 1 2782 276 152 43 chr4 125294117 125294481 -58994181 - MSTD-int LTR MaLR -851 884 561 5056 193 60 33 chr4 125294484 125294725 -58993937 + L1MC3 LINE L1 6520 6753 -1032 2259 112 7 0 chr4 125294725 125295028 -58993634 + AluSg SINE Alu 5 309 -1 5056 193 60 33 chr4 125295028 125295146 -58993516 + L1MC3 LINE L1 6753 6866 -919 432 0 0 0 chr4 125295146 125295194 -58993468 + (CA)n Simple_repeat Simple_repeat 2 49 0 5056 193 60 33 chr4 125295194 125296064 -58992598 + L1MC3 LINE L1 6866 7783 -2 294 319 27 54 chr4 125298046 125298140 -58990522 - MIR SINE MIR -60 202 114 3343 68 18 5 chr4 125298140 125298578 -58990084 - MLT2A1 LTR ERVL 0 444 1 294 319 27 54 chr4 125298578 125298668 -58989994 - MIR SINE MIR -148 114 23 354 255 0 32 chr4 125298849 125298943 -58989719 - L2 LINE L2 -1 3312 3222 315 358 22 17 chr4 125299169 125299348 -58989314 + MIR SINE MIR 2 181 -81 2111 240 62 13 chr4 125299422 125300130 -58988532 + L1ME1 LINE L1 4419 5161 -985 410 219 12 0 chr4 125300135 125300217 -58988445 - FLAM_C SINE Alu -25 118 36 370 271 108 0 chr4 125300217 125300346 -58988316 + L1ME1 LINE L1 5163 5305 -841 375 301 14 21 chr4 125300367 125300510 -58988152 + L1ME1 LINE L1 6000 6141 -25 376 216 10 31 chr4 125300546 125300643 -58988019 + L1MC5 LINE L1 7813 7907 -54 352 267 33 0 chr4 125301674 125301764 -58986898 + L2 LINE L2 3221 3313 0 571 306 31 0 chr4 125303372 125303568 -58985094 + MER63A DNA MER1_type 5 206 -4 987 102 0 29 chr4 125303818 125303955 -58984707 - AluSq/x SINE Alu -180 133 1 315 281 105 35 chr4 125305657 125305828 -58982834 + L2 LINE L2 3098 3280 -33 192 179 0 0 chr4 125306342 125306381 -58982281 + GA-rich Low_complexity Low_complexity 3 41 0 5645 83 53 10 chr4 125308475 125309286 -58979376 - L1PA10 LINE L1 -1 6167 5322 410 321 8 23 chr4 125312671 125312802 -58975860 + L2 LINE L2 3185 3313 0 21 0 0 0 chr4 125312852 125312873 -58975789 + AT_rich Low_complexity Low_complexity 1 21 0 316 289 149 38 chr4 125312885 125312937 -58975725 + L2 LINE L2 725 770 -2544 2233 130 8 8 chr4 125312937 125313292 -58975370 + THE1A LTR MaLR 1 355 0 11132 96 18 3 chr4 125313292 125314849 -58973813 + THE1A-int LTR MaLR 1 1580 0 2289 106 29 9 chr4 125314849 125315197 -58973465 + THE1A LTR MaLR 1 355 0 316 289 149 38 chr4 125315197 125315377 -58973285 + L2 LINE L2 769 985 -2329 245 301 45 45 chr4 125315552 125315685 -58972977 + MLT1H LTR MaLR 202 334 -215 1960 218 7 25 chr4 125315902 125316338 -58972324 + MSTC LTR MaLR 1 428 0 307 156 10 115 chr4 125316624 125316720 -58971942 - MER103 DNA DNA -73 93 8 24 32 0 0 chr4 125319090 125319121 -58969541 + AT_rich Low_complexity Low_complexity 1 31 0 3452 113 0 6 chr4 125319172 125319678 -58968984 - L1PA14 LINE L1 -76 6085 5583 21 57 0 0 chr4 125319956 125319991 -58968671 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr4 125320021 125320063 -58968599 + AT_rich Low_complexity Low_complexity 1 42 0 2231 107 0 3 chr4 125320516 125320814 -58967848 + AluSx SINE Alu 1 297 -15 2071 132 0 0 chr4 125321168 125321464 -58967198 + AluSc SINE Alu 1 296 -13 466 257 169 7 chr4 125322086 125322222 -58966440 + MER5A DNA MER1_type 29 186 -3 197 32 0 32 chr4 125323591 125323622 -58965040 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 21 57 0 0 chr4 125324091 125324126 -58964536 + AT_rich Low_complexity Low_complexity 1 35 0 272 263 97 35 chr4 125324590 125324704 -58963958 + L1MEd LINE L1 330 450 -5669 300 267 200 0 chr4 125325076 125325196 -58963466 + L1MEd LINE L1 2238 2381 -3748 2630 23 3 3 chr4 125325215 125325523 -58963139 + AluY SINE Alu 2 309 -2 374 273 146 36 chr4 125325700 125325865 -58962797 - MER5A DNA MER1_type 0 189 7 817 373 45 7 chr4 125326085 125326506 -58962156 + MERVL LTR ERVL 3987 4423 -1231 671 276 47 0 chr4 125326655 125326847 -58961815 - MER58A DNA MER1_type -23 201 1 649 295 112 75 chr4 125326948 125327511 -58961151 + MERVL LTR ERVL 4783 5366 -398 272 293 0 38 chr4 125330042 125330148 -58958514 - 7SK RNA RNA -90 103 2 21 36 0 0 chr4 125330522 125330550 -58958112 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 125330833 125330861 -58957801 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr4 125331418 125331453 -58957209 + AT_rich Low_complexity Low_complexity 1 35 0 294 319 51 7 chr4 125331877 125332015 -58956647 + MERVL LTR ERVL 2050 2193 -3292 28 48 0 0 chr4 125332148 125332190 -58956472 + AT_rich Low_complexity Low_complexity 1 42 0 22 56 0 0 chr4 125332400 125332436 -58956226 + AT_rich Low_complexity Low_complexity 1 36 0 215 260 0 0 chr4 125332469 125332519 -58956143 - MIR3 SINE MIR -4 204 155 21 57 0 0 chr4 125333653 125333688 -58954974 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr4 125333743 125333771 -58954891 + AT_rich Low_complexity Low_complexity 1 28 0 725 177 72 101 chr4 125334458 125334667 -58953995 - MER20 DNA MER1_type 0 219 17 267 191 0 0 chr4 125335165 125335228 -58953434 + (TA)n Simple_repeat Simple_repeat 1 63 0 507 216 222 24 chr4 125335238 125335405 -58953257 - MIR SINE MIR -38 224 25 22 0 0 0 chr4 125335894 125335916 -58952746 + AT_rich Low_complexity Low_complexity 1 22 0 596 299 16 16 chr4 125335931 125336115 -58952547 - MIR SINE MIR -50 212 29 1418 227 60 106 chr4 125336921 125337551 -58951111 + MER97c DNA MER1_type? 5 605 -485 1720 181 0 26 chr4 125337963 125338272 -58950390 + AluJb SINE Alu 6 306 -6 434 266 100 37 chr4 125338274 125338515 -58950147 + MER97c DNA MER1_type? 834 1089 -1 218 309 114 45 chr4 125338552 125338753 -58949909 + L3 LINE CR1 1347 1561 -16 251 207 171 0 chr4 125338953 125339035 -58949627 + MLT2B2 LTR ERVL 3 98 -417 855 213 38 89 chr4 125339042 125339096 -58949566 + MER52A LTR ERV1 667 722 -1033 2115 121 41 39 chr4 125339096 125339459 -58949203 - THE1B LTR MaLR 0 364 1 11113 105 11 3 chr4 125339459 125341026 -58947636 - THE1B-int LTR MaLR 0 1580 1 2132 134 39 31 chr4 125341028 125341387 -58947275 - THE1B LTR MaLR -2 362 1 855 213 38 89 chr4 125341387 125341777 -58946885 + MER52A LTR ERV1 722 1232 -523 636 267 31 46 chr4 125342014 125342353 -58946309 + MER52A LTR ERV1 1307 1755 0 1169 204 88 86 chr4 125342353 125342760 -58945902 + MLT2B2 LTR ERVL 94 501 -14 2501 194 32 2 chr4 125343001 125343502 -58945160 + LTR53 LTR ERVL 1 516 -3 23 0 0 0 chr4 125343980 125344003 -58944659 + AT_rich Low_complexity Low_complexity 1 23 0 213 209 0 0 chr4 125344045 125344088 -58944574 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 36 0 0 chr4 125346119 125346147 -58942515 + AT_rich Low_complexity Low_complexity 1 28 0 266 148 45 23 chr4 125346147 125346235 -58942427 + (TATAA)n Simple_repeat Simple_repeat 1 90 0 1066 194 111 0 chr4 125346633 125346921 -58941741 - MER33 DNA MER1_type -1 323 4 1431 218 37 24 chr4 125347335 125347699 -58940963 - MLT1A2 LTR MaLR 0 374 2 387 278 77 29 chr4 125348105 125348314 -58940348 - L1ME3A LINE L1 -300 5870 5652 719 189 0 0 chr4 125349339 125349461 -58939201 + FLAM_C SINE Alu 2 123 -20 27 73 0 0 chr4 125349463 125349518 -58939144 + AT_rich Low_complexity Low_complexity 1 55 0 1852 144 114 30 chr4 125349801 125350196 -58938466 + MSTA LTR MaLR 1 428 0 22 35 0 0 chr4 125350280 125350309 -58938353 + AT_rich Low_complexity Low_complexity 1 29 0 1978 137 0 3 chr4 125350621 125350927 -58937735 - AluSx SINE Alu 0 305 1 510 269 25 25 chr4 125352754 125352914 -58935748 + L1ME3A LINE L1 6007 6166 -4 21 0 0 0 chr4 125353191 125353212 -58935450 + AT_rich Low_complexity Low_complexity 1 21 0 243 151 19 0 chr4 125353817 125353870 -58934792 + HsTC2 DNA Tc2 22 75 -1823 917 162 31 92 chr4 125354132 125354361 -58934301 + MER20B DNA MER1_type 1 215 -4 189 324 106 62 chr4 125354443 125354622 -58934040 - L2 LINE L2 -1 3312 3126 1952 125 7 7 chr4 125354684 125354971 -58933691 + AluSc SINE Alu 1 287 -22 330 270 11 11 chr4 125355078 125355167 -58933495 - MLT1J LTR MaLR -193 318 230 183 330 75 38 chr4 125355533 125355639 -58933023 - L2 LINE L2 -186 3086 2977 2913 125 24 146 chr4 125356434 125356481 -58932181 + L1PA14 LINE L1 4665 4716 -1430 2515 57 0 0 chr4 125356481 125356782 -58931880 + AluY SINE Alu 1 301 -10 2913 125 24 146 chr4 125356782 125357496 -58931166 + L1PA14 LINE L1 4716 5333 -813 1411 139 26 13 chr4 125357496 125357726 -58930936 + AluSx SINE Alu 3 235 -77 5129 106 24 3 chr4 125357728 125358494 -58930168 + L1PA14 LINE L1 5380 6161 0 2040 81 0 8 chr4 125359057 125359316 -58929346 - AluSp SINE Alu -8 305 49 638 317 82 55 chr4 125359354 125359808 -58928854 + MLT1H LTR MaLR 84 549 0 1024 269 34 3 chr4 125360139 125360433 -58928229 - MER58B DNA MER1_type -28 313 11 23 0 0 0 chr4 125360485 125360508 -58928154 + AT_rich Low_complexity Low_complexity 1 23 0 412 294 172 0 chr4 125360890 125361053 -58927609 + MLT1H LTR MaLR 359 549 0 609 214 112 102 chr4 125361452 125361844 -58926818 + MER93a LTR ERV1 5 400 -2 225 244 0 49 chr4 125462960 125463042 -58825620 + C-rich Low_complexity Low_complexity 4 81 0 1850 126 3 11 chr4 125464733 125465018 -58823644 + AluSx SINE Alu 6 288 -24 184 278 63 40 chr4 125465223 125465349 -58823313 - L2 LINE L2 -332 2981 2853 24 53 0 0 chr4 125466526 125466564 -58822098 + GC_rich Low_complexity Low_complexity 1 38 0 187 349 128 0 chr4 125467332 125467418 -58821244 - MIR SINE MIR -118 144 48 2006 134 0 34 chr4 125468659 125469064 -58819598 - AluSg SINE Alu 0 394 1 1433 156 34 0 chr4 125469215 125469352 -58819310 + L1PB4 LINE L1 5347 5478 -825 1893 132 58 0 chr4 125469352 125469647 -58819015 + AluSx SINE Alu 1 312 0 1433 156 34 0 chr4 125469647 125469772 -58818890 + L1PB4 LINE L1 5478 5618 -685 2912 49 0 0 chr4 125469772 125470119 -58818543 + L1PA4 LINE L1 5807 6155 0 2887 196 16 2 chr4 125470127 125470674 -58817988 + L1PB4 LINE L1 5602 6156 0 3503 204 39 40 chr4 125470674 125470836 -58817826 + L1MB5 LINE L1 5323 5484 -690 2115 100 3 0 chr4 125470836 125471125 -58817537 - AluSx SINE Alu -22 290 1 3503 204 39 40 chr4 125471125 125471804 -58816858 + L1MB5 LINE L1 5484 6165 -9 2281 97 0 0 chr4 125471820 125472131 -58816531 + AluSq SINE Alu 1 311 -2 1639 101 0 13 chr4 125473086 125473314 -58815348 - AluSp SINE Alu -3 310 86 2149 103 33 0 chr4 125474899 125475200 -58813462 + AluSx SINE Alu 1 311 -1 278 230 50 36 chr4 125476363 125476502 -58812160 + (CCCTG)n Simple_repeat Simple_repeat 1 141 0 430 197 51 39 chr4 125476520 125476698 -58811964 + (CCCTG)n Simple_repeat Simple_repeat 1 180 0 204 177 55 37 chr4 125476715 125476879 -58811783 + (CCCTG)n Simple_repeat Simple_repeat 5 171 0 429 205 0 76 chr4 125476880 125477065 -58811597 + (CCCCG)n Simple_repeat Simple_repeat 2 172 0 339 302 0 0 chr4 125477550 125477646 -58811016 - HAL1 LINE L1 -1015 1492 1397 486 342 60 67 chr4 125477777 125478025 -58810637 - HAL1 LINE L1 -1317 1190 943 1255 201 34 0 chr4 125478025 125478264 -58810398 - L1MA2 LINE L1 0 6304 6058 486 342 60 67 chr4 125478264 125478331 -58810331 - HAL1 LINE L1 -1564 943 877 232 213 13 27 chr4 125478335 125478410 -58810252 + (TCCTG)n Simple_repeat Simple_repeat 5 78 0 239 224 0 35 chr4 125478410 125478468 -58810194 + C-rich Low_complexity Low_complexity 1 56 0 217 265 128 10 chr4 125479888 125479990 -58808672 + MIR SINE MIR 56 169 -93 922 209 199 67 chr4 125480198 125480604 -58808058 + MLT1C LTR MaLR 6 465 -2 234 240 48 48 chr4 125481308 125481412 -58807250 + L1MDb LINE L1 792 895 -5514 1985 256 86 35 chr4 125481566 125481618 -58807044 + L1MDb LINE L1 882 930 -5476 1617 223 94 28 chr4 125481618 125482088 -58806574 - MLT1D LTR MaLR -4 501 1 1985 256 86 35 chr4 125482088 125482897 -58805765 + L1MDb LINE L1 930 1697 -4709 1722 196 6 6 chr4 125482897 125483209 -58805453 + AluJo SINE Alu 1 312 0 1985 256 86 35 chr4 125483209 125483281 -58805381 + L1MDb LINE L1 1697 1764 -4642 1698 93 4 0 chr4 125483281 125483507 -58805155 - AluSg SINE Alu -83 227 1 1985 256 86 35 chr4 125483507 125483644 -58805018 + L1MDb LINE L1 1764 2008 -4398 8634 222 61 62 chr4 125483760 125485501 -58803161 - L1ME1 LINE L1 -130 6036 4295 2591 204 40 42 chr4 125485501 125486054 -58802608 - MLT2B3 LTR ERVL -2 552 1 8634 222 61 62 chr4 125486054 125486257 -58802405 - L1ME1 LINE L1 -1871 4295 4093 2379 78 3 3 chr4 125486257 125486564 -58802098 - AluSg SINE Alu -3 307 1 8634 222 61 62 chr4 125486564 125488305 -58800357 - L1ME1 LINE L1 -2073 4093 2328 1640 164 13 35 chr4 125488305 125488616 -58800046 - AluJo SINE Alu -8 304 1 8634 222 61 62 chr4 125488616 125488713 -58799949 - L1ME1 LINE L1 -3838 2328 2232 229 161 54 18 chr4 125489989 125490045 -58798617 - MLT2D LTR ERVL -128 286 229 227 239 0 0 chr4 125490808 125490854 -58797808 - MLT2D LTR ERVL -128 286 241 323 339 35 12 chr4 125491042 125491213 -58797449 + MLT1K LTR MaLR 413 587 -1 189 0 0 0 chr4 125492323 125492344 -58796318 + (GAAA)n Simple_repeat Simple_repeat 2 22 0 233 176 0 0 chr4 125494946 125494997 -58793665 - Alu SINE Alu -4 298 248 281 312 94 50 chr4 125495453 125495960 -58792702 - L1ME LINE L1 -339 5823 5296 2179 122 0 0 chr4 125495966 125496278 -58792384 - AluSx SINE Alu 0 312 1 301 324 65 6 chr4 125496387 125496557 -58792105 - L2 LINE L2 -433 2881 2702 1373 302 50 22 chr4 125497757 125498743 -58789919 + L1ME1 LINE L1 4976 5994 -172 2865 171 36 2 chr4 125499456 125499934 -58788728 - LOR1a LTR ERV1 0 497 4 743 253 45 5 chr4 125501203 125501401 -58787261 - L1MA10 LINE L1 -10 6324 6119 201 381 0 0 chr4 125502728 125502888 -58785774 + C-rich Low_complexity Low_complexity 1 160 0 2291 84 0 0 chr4 125503273 125503570 -58785092 - AluY SINE Alu -14 297 1 23 0 0 0 chr4 125503572 125503595 -58785067 + AT_rich Low_complexity Low_complexity 1 23 0 506 246 92 38 chr4 125503781 125504131 -58784531 + MER77 LTR ERV1 1 451 -154 342 0 0 0 chr4 125505792 125505830 -58782832 + (TG)n Simple_repeat Simple_repeat 1 38 0 195 42 0 0 chr4 125505913 125505937 -58782725 + (TG)n Simple_repeat Simple_repeat 1 24 0 213 39 0 0 chr4 125506213 125506239 -58782423 + (TG)n Simple_repeat Simple_repeat 1 26 0 238 290 0 0 chr4 125507379 125507448 -58781214 - MER20B DNA MER1_type -234 549 481 559 267 117 114 chr4 125508025 125508523 -58780139 - L1MEd LINE L1 -4960 1159 661 721 203 0 8 chr4 125508577 125508710 -58779952 - FLAM_A SINE Alu 0 133 2 1949 131 30 7 chr4 125515403 125515708 -58772954 - AluSx SINE Alu 0 312 1 1181 136 0 0 chr4 125516387 125516563 -58772099 + AluSg/x SINE Alu 135 310 0 862 198 19 6 chr4 125517188 125517345 -58771317 - AluJb SINE Alu -14 298 140 866 216 6 22 chr4 125517400 125517581 -58771081 - AluJb SINE Alu -13 299 122 509 274 42 58 chr4 125521979 125522181 -58766481 - L2 LINE L2 0 3313 3114 1845 160 3 13 chr4 125522181 125522493 -58766169 + AluJb SINE Alu 1 309 -3 509 274 42 58 chr4 125522493 125522531 -58766131 - L2 LINE L2 -199 3114 3077 207 0 0 0 chr4 125523537 125523560 -58765102 + (A)n Simple_repeat Simple_repeat 1 23 0 298 130 93 0 chr4 125523574 125523628 -58765034 - MADE1 DNA Mariner -21 59 1 235 366 35 25 chr4 125523723 125523925 -58764737 - L2 LINE L2 -199 3073 2870 313 266 52 8 chr4 125523955 125524122 -58764540 - L2 LINE L2 -339 2974 2793 239 103 26 0 chr4 125526820 125526859 -58761803 - MLT2C1 LTR ERVL -128 269 230 3530 117 21 52 chr4 125528814 125529117 -58759545 - L1MA4A LINE L1 -401 5902 5591 2912 49 0 0 chr4 125529117 125529466 -58759196 - L1PA4 LINE L1 0 6155 5807 3530 117 21 52 chr4 125529466 125529589 -58759073 - L1MA4A LINE L1 -712 5591 5466 1988 112 58 0 chr4 125529589 125529884 -58758778 - AluSx SINE Alu 0 312 1 3530 117 21 52 chr4 125529884 125530229 -58758433 - L1MA4A LINE L1 -837 5466 5150 987 179 53 11 chr4 125530270 125530460 -58758202 + THE1C LTR MaLR 1 198 -177 1566 189 16 26 chr4 125530533 125530839 -58757823 - AluJo SINE Alu -9 303 1 8925 175 69 53 chr4 125530842 125531717 -58756945 - L1MA4A LINE L1 -1505 4641 3782 1773 154 14 0 chr4 125531717 125531997 -58756665 - AluSx SINE Alu -22 290 7 8925 175 69 53 chr4 125531997 125532203 -58756459 - L1MA4A LINE L1 -2364 3782 3581 2321 66 0 13 chr4 125532203 125532508 -58756154 - AluSc SINE Alu -8 301 1 8925 175 69 53 chr4 125532508 125532942 -58755720 - L1MA4A LINE L1 -2565 3581 3155 2304 139 3 15 chr4 125532942 125533281 -58755381 + MER1B DNA MER1_type 1 335 -2 8925 175 69 53 chr4 125533281 125533597 -58755065 - L1MA4A LINE L1 -2991 3155 2846 2357 89 0 0 chr4 125533597 125533899 -58754763 - AluSg SINE Alu -8 302 1 8925 175 69 53 chr4 125533899 125534417 -58754245 - L1MA4A LINE L1 -3300 2846 2251 798 154 0 0 chr4 125534423 125534540 -58754122 - FLAM_C SINE Alu -25 118 2 9387 235 53 52 chr4 125534545 125534649 -58754013 - L1M4c LINE L1 -3886 2964 2862 2141 123 0 0 chr4 125534649 125534949 -58753713 + AluSx SINE Alu 3 302 -10 9387 235 53 52 chr4 125534949 125537791 -58750871 - L1M4c LINE L1 -3988 2862 13 1632 186 14 132 chr4 125537797 125538356 -58750306 - L1M4 LINE L1 -810 5336 4844 1208 142 0 26 chr4 125538733 125538923 -58749739 - AluJb SINE Alu -33 279 95 27 0 0 0 chr4 125538926 125538953 -58749709 + AT_rich Low_complexity Low_complexity 1 27 0 385 309 51 6 chr4 125539209 125539384 -58749278 - LTR41 LTR ERVL -590 183 1 1113 286 94 6 chr4 125539417 125539893 -58748769 - L1MEc LINE L1 -4434 1962 1445 871 143 8 0 chr4 125539894 125540027 -58748635 + AluJb SINE Alu 1 134 -178 427 279 53 13 chr4 125540028 125540254 -58748408 - L1MEc LINE L1 -4942 1454 1220 2808 222 60 68 chr4 125540257 125540440 -58748222 - L1M4 LINE L1 -1734 4412 4229 1739 159 3 41 chr4 125540440 125540754 -58747908 - AluJo SINE Alu -10 302 1 2808 222 60 68 chr4 125540754 125541628 -58747034 - L1M4 LINE L1 -1917 4229 3350 1679 183 55 33 chr4 125541628 125541994 -58746668 - MLT1A2 LTR MaLR 0 374 1 225 0 0 0 chr4 125541998 125542023 -58746639 + (TA)n Simple_repeat Simple_repeat 2 26 0 2282 101 0 3 chr4 125542023 125542331 -58746331 - AluSq SINE Alu -6 307 1 2181 125 0 0 chr4 125542337 125542648 -58746014 - AluSx SINE Alu -1 311 1 2808 222 60 68 chr4 125542648 125542819 -58745843 - L1M4 LINE L1 -2803 3343 3179 213 121 0 0 chr4 125542819 125542852 -58745810 + (TCCCC)n Simple_repeat Simple_repeat 3 35 0 1073 140 38 11 chr4 125542852 125543038 -58745624 - AluSg/x SINE Alu -2 310 120 2471 223 101 13 chr4 125543038 125543892 -58744770 - L1M4 LINE L1 -2980 3166 2238 244 200 17 0 chr4 125545777 125545897 -58742765 + (TG)n Simple_repeat Simple_repeat 1 122 0 387 197 8 60 chr4 125545909 125546291 -58742371 + (TG)n Simple_repeat Simple_repeat 1 362 0 448 126 0 19 chr4 125546390 125546493 -58742169 + (TG)n Simple_repeat Simple_repeat 2 102 0 1195 157 44 0 chr4 125547024 125547228 -58741434 + AluJb SINE Alu 85 297 -15 557 132 0 0 chr4 125547466 125547542 -58741120 - FLAM_A SINE Alu -24 118 43 317 299 0 36 chr4 125548296 125548463 -58740199 + (CTGGGG)n Simple_repeat Simple_repeat 2 162 0 1771 138 14 30 chr4 125549129 125549426 -58739236 - AluJb SINE Alu -20 292 1 238 221 23 29 chr4 125550225 125550810 -58737852 + G-rich Low_complexity Low_complexity 1 581 0 257 266 3 74 chr4 125553927 125554127 -58734535 + C-rich Low_complexity Low_complexity 1 185 0 3645 221 26 2 chr4 125554737 125555719 -58732943 + L1MB5 LINE L1 5170 6172 -2 716 258 48 98 chr4 125562443 125562843 -58725819 + MLT1B LTR MaLR 3 382 -8 2212 192 72 18 chr4 125562843 125563410 -58725252 + MLT1B-int LTR MaLR 15 612 -759 2342 63 0 10 chr4 125563423 125563722 -58724940 + AluY SINE Alu 12 307 -4 1669 232 59 33 chr4 125563740 125564404 -58724258 - L1M4 LINE L1 -991 5155 4475 350 114 14 0 chr4 125564855 125564925 -58723737 + (TG)n Simple_repeat Simple_repeat 2 72 0 255 231 51 39 chr4 125565192 125565270 -58723392 - LTR40c LTR ERVL -274 191 113 741 268 49 4 chr4 125566018 125566264 -58722398 + LTR40b LTR ERVL 196 452 -10 341 215 158 32 chr4 125566426 125566584 -58722078 - L1MC/D LINE L1 -2376 5432 5255 2570 238 74 34 chr4 125567664 125568601 -58720061 - L1ME1 LINE L1 -5 6161 5128 2469 58 0 10 chr4 125568601 125568911 -58719751 + AluY SINE Alu 1 307 -4 2570 238 74 34 chr4 125568911 125569604 -58719058 - L1ME1 LINE L1 -1038 5128 4464 3665 222 25 2 chr4 125570076 125571059 -58717603 + L1MB5 LINE L1 5170 6172 -2 716 258 48 98 chr4 125578441 125578841 -58709821 + MLT1B LTR MaLR 3 382 -8 3435 236 85 43 chr4 125578841 125579408 -58709254 + MLT1A2-int LTR MaLR 15 557 -814 2051 99 32 0 chr4 125579408 125579692 -58708970 + AluSg1 SINE Alu 1 293 -16 3435 236 85 43 chr4 125579692 125580413 -58708249 + MLT1A2-int LTR MaLR 557 1357 -14 1564 193 45 58 chr4 125580424 125580803 -58707859 + MLT1A2 LTR MaLR 1 374 0 396 337 22 71 chr4 125582526 125582927 -58705735 + L1MDa LINE L1 1846 2242 -4298 1162 308 92 10 chr4 125582994 125584070 -58704592 + L1MDa LINE L1 2436 3574 -2966 513 235 42 25 chr4 125584139 125584377 -58704285 + L1MDa LINE L1 3727 3968 -2572 2300 240 90 74 chr4 125584388 125585378 -58703284 + L1MC4a LINE L1 6540 7545 -263 267 267 27 0 chr4 125585465 125585540 -58703122 + L1MC4 LINE L1 7965 8041 -1 476 248 151 31 chr4 125589365 125589740 -58698922 - MLT2B2 LTR ERVL -2 513 57 22 35 0 0 chr4 125592270 125592299 -58696363 + GC_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 125592377 125592398 -58696264 + GC_rich Low_complexity Low_complexity 1 21 0 301 172 78 0 chr4 125596921 125596985 -58691677 - U3 snRNA snRNA -147 70 2 559 345 33 86 chr4 125597475 125597542 -58691120 + HAL1 LINE L1 877 946 -1561 1283 201 34 0 chr4 125597542 125597781 -58690881 + L1MA2 LINE L1 6058 6304 0 559 345 33 86 chr4 125597781 125598072 -58690590 + HAL1 LINE L1 946 1216 -1291 317 302 0 0 chr4 125598160 125598256 -58690406 + HAL1 LINE L1 1397 1492 -1015 480 208 0 71 chr4 125598761 125598944 -58689718 + (CGGGG)n Simple_repeat Simple_repeat 5 174 0 430 197 51 39 chr4 125598961 125599139 -58689523 + (CAGGG)n Simple_repeat Simple_repeat 1 180 0 246 263 0 70 chr4 125599055 125599241 -58689421 + (CGAGG)n Simple_repeat Simple_repeat 2 174 0 * 409 209 11 70 chr4 125599262 125599449 -58689213 + (CAGGG)n Simple_repeat Simple_repeat 5 180 0 293 206 46 38 chr4 125599466 125599597 -58689065 + (CAGGG)n Simple_repeat Simple_repeat 5 136 0 376 230 5 64 chr4 125599613 125599800 -58688862 + (CAGGG)n Simple_repeat Simple_repeat 5 180 0 334 371 14 68 chr4 125599804 125600084 -58688578 + HAL1 LINE L1 2211 2475 -32 2173 103 33 0 chr4 125600964 125601265 -58687397 - AluSx SINE Alu -1 311 1 305 299 13 25 chr4 125606892 125607032 -58681630 - MIR SINE MIR -59 149 44 331 266 62 0 chr4 125609145 125609258 -58679404 + L1M3 LINE L1 5700 5819 -352 971 239 43 0 chr4 125609263 125609681 -58678981 + L1M2 LINE L1 5115 5547 -744 277 160 0 0 chr4 125609688 125609738 -58678924 + L1MB3 LINE L1 5498 5547 -757 265 160 0 0 chr4 125609745 125609795 -58678867 + L1MB3 LINE L1 5498 5547 -758 265 160 0 0 chr4 125609802 125609852 -58678810 + L1MB3 LINE L1 5498 5547 -758 1700 223 23 56 chr4 125609859 125610379 -58678283 + L1MA8 LINE L1 5498 6000 -291 904 218 125 0 chr4 125610392 125610681 -58677981 + L1MB3 LINE L1 5817 6141 -42 2322 83 3 7 chr4 125610692 125610993 -58677669 + AluSx SINE Alu 1 300 -12 240 293 61 0 chr4 125613061 125613160 -58675502 + LTR37A LTR ERV1 302 406 -20 426 399 42 40 chr4 125613759 125614203 -58674459 + L1M4 LINE L1 3442 3888 -2258 546 349 91 22 chr4 125614260 125614858 -58673804 - L1M4 LINE L1 -1229 4917 4255 2111 95 10 14 chr4 125614858 125615175 -58673487 - AluSq SINE Alu 0 313 1 546 349 91 22 chr4 125615175 125615333 -58673329 - L1M4 LINE L1 -1891 4255 4109 683 313 0 0 chr4 125615342 125615537 -58673125 - MER58A DNA MER1_type -2 222 28 788 365 31 15 chr4 125615572 125616308 -58672354 - L1M4 LINE L1 -2043 4103 3356 * 2079 268 80 10 chr4 125616307 125617388 -58671274 - L1ME2 LINE L1 -141 6023 4865 1081 226 36 39 chr4 125617435 125617536 -58671126 - L1ME2 LINE L1 -1394 4752 4652 1871 140 13 48 chr4 125617536 125617850 -58670812 - AluJo SINE Alu -9 303 1 1081 226 36 39 chr4 125617850 125618107 -58670555 - L1ME2 LINE L1 -1494 4652 4395 * 1119 249 40 34 chr4 125618105 125618578 -58670084 - L1ME2 LINE L1 -2615 3531 3056 293 284 29 7 chr4 125618802 125618965 -58669697 + L1ME LINE L1 5265 5431 -739 655 316 165 34 chr4 125619480 125620043 -58668619 + L1 LINE L1 3307 3943 -2203 1689 113 0 0 chr4 125620048 125620277 -58668385 - AluSg/x SINE Alu -1 309 81 2316 85 0 0 chr4 125621321 125621627 -58667035 + AluSg SINE Alu 1 306 -4 480 353 39 62 chr4 125621824 125622130 -58666532 + L1MEd LINE L1 636 934 -5185 2139 101 10 7 chr4 125626779 125627075 -58661587 - AluSx SINE Alu -15 297 1 390 168 22 0 chr4 125628397 125628534 -58660128 + (CACG)n Simple_repeat Simple_repeat 4 143 0 27 29 0 0 chr4 125632237 125632271 -58656391 + AT_rich Low_complexity Low_complexity 1 34 0 207 0 0 0 chr4 125632922 125632945 -58655717 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1431 60 6 6 chr4 125632947 125633130 -58655532 - AluY SINE Alu -32 279 97 588 198 25 0 chr4 125633616 125633737 -58654925 - MER63 DNA MER1_type -312 750 1 507 172 12 47 chr4 125633802 125633971 -58654691 + (TGGA)n Simple_repeat Simple_repeat 4 166 0 1019 151 3 5 chr4 125634071 125634845 -58653817 + (TGGA)n Simple_repeat Simple_repeat 1 772 0 206 273 0 0 chr4 125635096 125635140 -58653522 - MIR3 SINE MIR -13 195 152 237 100 50 0 chr4 125635298 125635338 -58653324 - Charlie3 DNA MER1_type -65 2645 2604 3214 141 17 30 chr4 125636253 125636784 -58651878 - MER1A DNA MER1_type -3 524 1 896 144 0 14 chr4 125644848 125644987 -58643675 + AluJo SINE Alu 1 137 -175 2084 148 0 0 chr4 125646845 125647156 -58641506 - AluSx SINE Alu -1 311 1 243 287 83 46 chr4 125647348 125647456 -58641206 - L2 LINE L2 -1 3271 3160 396 285 51 43 chr4 125647864 125648099 -58640563 - L1M4 LINE L1 -813 5333 5097 437 373 54 19 chr4 125648607 125648923 -58639739 - L1MEd LINE L1 -5733 386 60 1804 136 0 52 chr4 125648961 125649269 -58639393 - AluSx SINE Alu -20 292 1 2497 65 0 0 chr4 125649281 125649591 -58639071 - AluSg SINE Alu 0 310 1 464 44 0 15 chr4 125650991 125651059 -58637603 + (CGG)n Simple_repeat Simple_repeat 2 68 0 341 306 131 31 chr4 125652270 125652492 -58636170 + L1ME4a LINE L1 5795 6038 -83 239 264 80 24 chr4 125652625 125652750 -58635912 + L1ME4a LINE L1 5990 6121 0 2480 54 0 16 chr4 125653119 125653435 -58635227 - AluY SINE Alu 0 311 1 2221 105 3 6 chr4 125654356 125654669 -58633993 + AluSx SINE Alu 1 312 0 2798 203 45 3 chr4 125657061 125657712 -58630950 - L1MB3 LINE L1 -2 6417 5740 * 9787 178 63 35 chr4 125657691 125657746 -58630916 - L1MB3 LINE L1 -3180 3202 3150 2216 85 0 0 chr4 125657746 125658054 -58630608 + AluSq SINE Alu 1 308 0 9787 178 63 35 chr4 125658054 125661084 -58627578 - L1MB3 LINE L1 -3232 3150 25 325 338 54 22 chr4 125662092 125662314 -58626348 - MIR SINE MIR -29 233 5 180 0 0 0 chr4 125662650 125662670 -58625992 + (T)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr4 125663426 125663454 -58625208 + AT_rich Low_complexity Low_complexity 1 28 0 1640 71 0 5 chr4 125663474 125663685 -58624977 - AluY SINE Alu -101 210 1 920 227 14 0 chr4 125663882 125664089 -58624573 + MER2 DNA MER2_type 1 210 -135 21 0 0 0 chr4 125664090 125664111 -58624551 + AT_rich Low_complexity Low_complexity 1 21 0 265 221 59 0 chr4 125664214 125664282 -58624380 - L2 LINE L2 -18 3295 3224 655 165 0 0 chr4 125666192 125666289 -58622373 - AluSg/x SINE Alu -19 291 195 253 257 118 40 chr4 125667721 125667873 -58620789 - L1MC5 LINE L1 -817 7144 6981 21 0 0 0 chr4 125668095 125668116 -58620546 + AT_rich Low_complexity Low_complexity 1 21 0 277 220 90 33 chr4 125668239 125668268 -58620394 - AluJo/F(R)AM SINE Alu -79 223 262 2257 110 0 0 chr4 125668268 125668568 -58620094 + AluSg SINE Alu 1 300 -10 277 220 90 33 chr4 125668568 125668664 -58619998 - AluJo/F(R)AM SINE Alu -39 263 174 400 343 45 8 chr4 125669568 125669702 -58618960 + L1ME4a LINE L1 3698 3836 -2310 2069 108 7 0 chr4 125669755 125670043 -58618619 + AluSp SINE Alu 1 290 -23 421 327 59 96 chr4 125670211 125670879 -58617783 + L1ME4a LINE L1 5256 5882 -239 2316 85 0 0 chr4 125673476 125673782 -58614880 + AluSg SINE Alu 1 306 -4 480 353 39 62 chr4 125673979 125674285 -58614377 + L1MEd LINE L1 636 934 -5185 2191 101 7 7 chr4 125678664 125678962 -58609700 - AluSx SINE Alu -14 298 1 332 314 54 76 chr4 125683082 125683397 -58605265 + L1M2 LINE L1 1603 1910 -4939 2178 90 10 10 chr4 125683833 125684122 -58604540 + AluSx SINE Alu 1 289 -23 200 188 0 0 chr4 125684915 125684947 -58603715 + MIR SINE MIR 219 250 -12 188 213 21 43 chr4 125684947 125684962 -58603700 + L2 LINE L2 3223 3268 -4 213 209 0 23 chr4 125685302 125685345 -58603317 + (CACG)n Simple_repeat Simple_repeat 3 44 0 22 0 0 0 chr4 125687982 125688004 -58600658 + GC_rich Low_complexity Low_complexity 1 22 0 29 60 0 0 chr4 125688084 125688134 -58600528 + GC_rich Low_complexity Low_complexity 1 50 0 22 80 0 0 chr4 125688345 125688395 -58600267 + GC_rich Low_complexity Low_complexity 1 50 0 209 262 16 71 chr4 125689164 125689347 -58599315 + GA-rich Low_complexity Low_complexity 2 174 0 241 271 6 55 chr4 125689599 125689780 -58598882 + GA-rich Low_complexity Low_complexity 5 176 0 2063 109 3 0 chr4 125695834 125696117 -58592545 - AluSx SINE Alu -15 297 14 23 0 0 0 chr4 125699095 125699118 -58589544 + AT_rich Low_complexity Low_complexity 1 23 0 203 187 13 80 chr4 125701491 125701566 -58587096 + G-rich Low_complexity Low_complexity 1 70 0 328 137 37 100 chr4 125702143 125702333 -58586329 + (CACCG)n Simple_repeat Simple_repeat 2 179 0 373 132 49 81 chr4 125702398 125702776 -58585886 + (CACCG)n Simple_repeat Simple_repeat 1 365 0 238 268 0 0 chr4 125702789 125702845 -58585817 + MLT1B LTR MaLR 330 385 -5 2324 78 0 0 chr4 125702884 125703178 -58585484 - AluSx SINE Alu -18 294 1 614 121 0 20 chr4 125803917 125804016 -58484646 + AluSp/q SINE Alu 203 299 -14 366 284 86 41 chr4 125804639 125804836 -58483826 - L1MC/D LINE L1 -2320 5488 5283 4016 114 52 5 chr4 125805259 125805873 -58482789 + LTR9B LTR ERV1 2 644 0 485 56 62 37 chr4 125806575 125806701 -58481961 + (TA)n Simple_repeat Simple_repeat 2 134 -33 1789 218 63 65 chr4 125806701 125807256 -58481406 + MLT2B3 LTR ERVL 1 554 0 35 0 0 0 chr4 125807256 125807291 -58481371 + AT_rich Low_complexity Low_complexity 1 35 0 895 334 53 8 chr4 125807728 125808102 -58480560 + L2 LINE L2 2044 2434 -880 1852 137 46 0 chr4 125808255 125808539 -58480123 - AluSq SINE Alu -16 297 1 2144 120 0 0 chr4 125808547 125808846 -58479816 - AluSx SINE Alu -13 299 1 185 150 0 25 chr4 125810355 125810395 -58478267 + (TATG)n Simple_repeat Simple_repeat 1 39 0 267 152 0 0 chr4 125810950 125810996 -58477666 + A-rich Low_complexity Low_complexity 1 46 0 1884 146 4 0 chr4 125811346 125811678 -58476984 - AluSx SINE Alu 0 333 1 225 0 0 0 chr4 125812571 125812596 -58476066 + (CA)n Simple_repeat Simple_repeat 2 26 0 273 342 60 7 chr4 125812744 125812893 -58475769 + MIR SINE MIR 105 261 -1 1035 198 128 89 chr4 125813524 125813707 -58474955 - MER39 LTR ERV1 0 707 533 2173 104 0 13 chr4 125813707 125814005 -58474657 - AluSg SINE Alu -16 294 1 1035 198 128 89 chr4 125814005 125814226 -58474436 - MER39 LTR ERV1 -174 533 287 211 296 28 0 chr4 125814394 125814465 -58474197 - L2 LINE L2 -252 3061 2989 1138 152 0 0 chr4 125814806 125814990 -58473672 - L1PA15 LINE L1 -5 6160 5977 27 0 0 0 chr4 125815080 125815107 -58473555 + AT_rich Low_complexity Low_complexity 1 27 0 320 202 101 30 chr4 125816323 125816422 -58472240 - L1MC4 LINE L1 -1 8041 7936 210 189 0 19 chr4 125816427 125816480 -58472182 + (TA)n Simple_repeat Simple_repeat 1 52 0 195 222 0 0 chr4 125816496 125816541 -58472121 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 1960 259 118 10 chr4 125816551 125817246 -58471416 - L1MC4 LINE L1 -124 7918 7149 324 202 101 30 chr4 125818574 125818673 -58469989 - L1MC4 LINE L1 -1 8041 7936 212 200 18 0 chr4 125818678 125818733 -58469929 + (TA)n Simple_repeat Simple_repeat 1 56 0 196 209 15 30 chr4 125818749 125818816 -58469846 + (TATATG)n Simple_repeat Simple_repeat 5 70 0 25 0 0 0 chr4 125820538 125820563 -58468099 + AT_rich Low_complexity Low_complexity 1 25 0 5783 167 27 101 chr4 125822164 125822456 -58466206 + L1M4c LINE L1 899 1211 -5173 1972 128 0 13 chr4 125822456 125822754 -58465908 + AluSg SINE Alu 1 294 -16 5783 167 27 101 chr4 125822754 125823541 -58465121 + L1M4c LINE L1 1211 1824 -4560 189 0 0 0 chr4 125823541 125823562 -58465100 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 5783 167 27 101 chr4 125823562 125824088 -58464574 + L1M4c LINE L1 1824 2387 -3997 841 281 32 0 chr4 125824089 125824399 -58464263 + L1M4c LINE L1 2814 3133 -3249 * 2282 187 39 5 chr4 125824392 125824775 -58463887 + L1MA5 LINE L1 4868 5237 -1063 823 234 22 26 chr4 125824775 125825006 -58463656 + MER46A DNA MER2_type 3 232 -4 2282 187 39 5 chr4 125825006 125825392 -58463270 + L1MA5 LINE L1 5237 5668 -632 1876 200 24 0 chr4 125825392 125825797 -58462865 + L1MA5 LINE L1 5876 6300 0 4430 249 34 11 chr4 125825839 125827163 -58461499 + L1M4c LINE L1 3112 4466 -1916 1813 121 0 4 chr4 125828140 125828389 -58460273 + AluSx SINE Alu 1 248 -64 24 0 0 0 chr4 125830320 125830344 -58458318 + AT_rich Low_complexity Low_complexity 1 24 0 9033 90 12 0 chr4 125830391 125832481 -58456181 + L1PA7 LINE L1 4010 6149 -5 2548 188 18 2 chr4 125832887 125833387 -58455275 - L1MB2 LINE L1 -2 6169 5662 592 93 0 41 chr4 125833387 125833484 -58455178 - Alu SINE Alu -8 303 211 2367 195 43 7 chr4 125833487 125834396 -58454266 - L1MB2 LINE L1 -503 5668 4555 1212 188 123 71 chr4 125834481 125834832 -58453830 - L1MC3 LINE L1 -240 7545 7177 300 329 0 0 chr4 125834842 125834924 -58453738 - MLT1F1 LTR MaLR -450 117 36 21 0 0 0 chr4 125834936 125834957 -58453705 + AT_rich Low_complexity Low_complexity 1 21 0 43 35 0 0 chr4 125834985 125835042 -58453620 + AT_rich Low_complexity Low_complexity 1 57 0 680 248 40 9 chr4 125835042 125835268 -58453394 - L1MC3 LINE L1 -691 7094 6862 862 200 70 30 chr4 125835270 125835540 -58453122 + L1MCa LINE L1 2175 2455 -3971 747 97 0 26 chr4 125835541 125835654 -58453008 - L1PB1 LINE L1 -146 6005 5896 726 158 0 0 chr4 125835654 125835772 -58452890 + L1PB1 LINE L1 6031 6150 -1 28 29 0 0 chr4 125835848 125835883 -58452779 + AT_rich Low_complexity Low_complexity 1 35 0 919 271 127 7 chr4 125835886 125836351 -58452311 + L1MCa LINE L1 2452 2972 -3454 294 169 22 45 chr4 125836401 125836490 -58452172 + L1MCa LINE L1 3460 3546 -2880 661 300 132 5 chr4 125837307 125837527 -58451135 + MIR SINE MIR 2 249 -13 194 339 36 57 chr4 125837671 125837919 -58450743 - L2 LINE L2 -1209 2105 1863 7443 27 0 0 chr4 125838484 125839939 -58448723 - L1PA3 LINE L1 -1 6154 4694 9150 33 0 0 chr4 125839939 125841035 -58447627 + L1PA3 LINE L1 3589 4684 -1462 410 313 5 56 chr4 125841185 125841383 -58447279 - LTR41 LTR ERVL -583 190 3 503 301 65 53 chr4 125841679 125841774 -58446888 + L1MC/D LINE L1 5292 5384 -2424 1979 120 0 7 chr4 125841774 125842080 -58446582 + AluSg SINE Alu 1 304 0 503 301 65 53 chr4 125842080 125842475 -58446187 + L1MC/D LINE L1 5384 5789 -2019 * 11011 234 22 10 chr4 125842473 125845327 -58443335 + L1P LINE L1 2017 4905 -1241 351 0 0 0 chr4 125846515 125846554 -58442108 + (TA)n Simple_repeat Simple_repeat 2 40 0 1663 309 144 48 chr4 125846732 125847579 -58441083 + L2 LINE L2 124 888 -2426 2169 103 0 0 chr4 125847579 125847869 -58440793 - AluSq SINE Alu -23 290 1 1663 309 144 48 chr4 125847869 125848533 -58440129 + L2 LINE L2 888 1781 -1533 246 175 0 0 chr4 125848680 125848720 -58439942 - MER53 DNA DNA -143 46 7 24 32 0 0 chr4 125848832 125848863 -58439799 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr4 125849247 125849270 -58439392 + AT_rich Low_complexity Low_complexity 1 23 0 2016 191 44 83 chr4 125849717 125850080 -58438582 - L1MDb LINE L1 -5063 1346 1019 2642 87 5 0 chr4 125850080 125850450 -58438212 - L1PA8 LINE L1 0 6172 5801 2016 191 44 83 chr4 125850450 125850746 -58437916 - L1MDb LINE L1 -5390 1019 713 22 35 0 0 chr4 125851801 125851830 -58436832 + AT_rich Low_complexity Low_complexity 1 29 0 2744 168 24 50 chr4 125852166 125852742 -58435920 - LTR9 LTR ERV1 -51 561 1 539 228 0 24 chr4 125853052 125853175 -58435487 + FLAM_A SINE Alu 1 120 -13 237 260 0 0 chr4 125853839 125853916 -58434746 + (TA)n Simple_repeat Simple_repeat 1 77 0 22 56 0 0 chr4 125853953 125853989 -58434673 + AT_rich Low_complexity Low_complexity 1 36 0 253 254 79 48 chr4 125854044 125854170 -58434492 + MIR SINE MIR 77 206 -56 255 277 194 19 chr4 125855970 125856125 -58432537 - MIR SINE MIR 0 262 81 374 417 22 0 chr4 125856585 125856808 -58431854 + L2 LINE L2 1127 1354 -1960 1912 119 10 26 chr4 125857093 125857405 -58431257 - AluSq SINE Alu -6 307 1 29 28 0 0 chr4 125857634 125857670 -58430992 + AT_rich Low_complexity Low_complexity 1 36 0 1854 149 20 7 chr4 125857833 125858128 -58430534 - AluSx SINE Alu -9 303 5 377 356 53 65 chr4 125858128 125858300 -58430362 + L2 LINE L2 2214 2387 -927 186 71 0 0 chr4 125858300 125858328 -58430334 + (TTG)n Simple_repeat Simple_repeat 2 29 0 2244 39 0 14 chr4 125858338 125858618 -58430044 - AluY SINE Alu -35 276 1 377 356 53 65 chr4 125858618 125858864 -58429798 + L2 LINE L2 2396 2639 -675 298 293 152 0 chr4 125858951 125859115 -58429547 + Charlie7 DNA MER1_type 43 231 -2381 889 297 45 12 chr4 125859258 125859682 -58428980 + Charlie7 DNA MER1_type 285 722 -1890 21 0 0 0 chr4 125859682 125859703 -58428959 + AT_rich Low_complexity Low_complexity 1 21 0 230 274 65 27 chr4 125859718 125859904 -58428758 + Charlie7 DNA MER1_type 2417 2609 -3 740 201 82 0 chr4 125860467 125860661 -58428001 + L1MA9 LINE L1 6069 6278 -34 254 297 40 0 chr4 125860733 125860807 -58427855 + L3 LINE CR1 1488 1564 -13 755 231 46 0 chr4 125862359 125862532 -58426130 + MER20 DNA MER1_type 39 219 0 2109 121 0 3 chr4 125863631 125863929 -58424733 - AluSg SINE Alu -13 297 1 422 297 17 17 chr4 125864285 125864460 -58424202 + MER69A DNA AcHobo 1 175 -2 31 26 0 0 chr4 125864912 125864950 -58423712 + AT_rich Low_complexity Low_complexity 1 38 0 342 371 45 10 chr4 125865764 125865966 -58422696 + LTR16C LTR ERVL 35 243 -248 1769 235 45 20 chr4 125866050 125866543 -58422119 + MLT1D LTR MaLR 1 505 0 478 289 12 139 chr4 125867100 125867581 -58421081 - LTR67 LTR ERVL -41 516 97 2263 107 3 0 chr4 125868921 125869229 -58419433 - AluSc SINE Alu 0 309 1 296 200 0 0 chr4 125870003 125870058 -58418604 + L1M4 LINE L1 4255 4309 -1837 288 0 0 0 chr4 125870061 125870093 -58418569 + (TG)n Simple_repeat Simple_repeat 2 33 0 22 70 0 0 chr4 125870125 125870168 -58418494 + AT_rich Low_complexity Low_complexity 1 43 0 1188 272 65 30 chr4 125870194 125870855 -58417807 + L1ME2 LINE L1 2808 3445 -2701 18967 93 15 6 chr4 125870855 125871802 -58416860 + L1PA7 LINE L1 2562 3499 -2655 2078 112 10 3 chr4 125871802 125872105 -58416557 + AluSx SINE Alu 1 305 -7 18967 93 15 6 chr4 125872105 125874729 -58413933 + L1PA7 LINE L1 3499 6148 -6 1188 272 65 30 chr4 125874729 125874846 -58413816 + L1ME2 LINE L1 3445 5084 -1062 336 217 9 26 chr4 125874851 125874966 -58413696 + CT-rich Low_complexity Low_complexity 1 113 0 615 169 20 14 chr4 125874997 125875145 -58413517 + CT-rich Low_complexity Low_complexity 2 150 0 1390 245 79 67 chr4 125875203 125875458 -58413204 + L1ME2 LINE L1 5421 5671 -493 2053 129 58 25 chr4 125875458 125875821 -58412841 + THE1C LTR MaLR 1 375 0 1390 245 79 67 chr4 125875821 125876300 -58412362 + L1ME2 LINE L1 5671 6164 0 2202 167 47 5 chr4 125876574 125876975 -58411687 - MSTB LTR MaLR -1 425 8 258 338 50 67 chr4 125877565 125877864 -58410798 + L2 LINE L2 3019 3312 -1 258 160 0 0 chr4 125878731 125878781 -58409881 + (CAT)n Simple_repeat Simple_repeat 3 52 0 27 0 0 0 chr4 125880163 125880190 -58408472 + AT_rich Low_complexity Low_complexity 1 27 0 261 327 10 0 chr4 125880847 125880951 -58407711 + MLT1L LTR MaLR 135 239 -376 279 284 66 71 chr4 125881059 125881167 -58407495 + MLT1L LTR MaLR 420 528 -87 315 0 0 0 chr4 125881167 125881202 -58407460 + (CA)n Simple_repeat Simple_repeat 2 36 0 279 284 66 71 chr4 125881202 125881290 -58407372 + MLT1L LTR MaLR 528 615 0 238 214 0 0 chr4 125881466 125881508 -58407154 - MER5A DNA MER1_type 0 189 148 2545 166 9 12 chr4 125883342 125883769 -58404893 + MSTB LTR MaLR 1 426 0 404 342 86 12 chr4 125883776 125884019 -58404643 - MIR SINE MIR 0 262 2 269 317 129 48 chr4 125885122 125885456 -58403206 + L2 LINE L2 1792 2152 -1162 767 294 96 41 chr4 125886289 125886708 -58401954 - LTR8A LTR ERV1 0 727 286 402 219 6 154 chr4 125886889 125887058 -58401604 - LTR8 LTR ERV1 -547 144 1 5105 113 68 20 chr4 125887433 125888265 -58400397 - MER4D LTR ERV1 0 872 1 23 68 0 0 chr4 125888309 125888353 -58400309 + AT_rich Low_complexity Low_complexity 1 44 0 1902 303 47 49 chr4 125888402 125889115 -58399547 + L1MB8 LINE L1 9 722 -6137 209 0 97 0 chr4 125889115 125889146 -58399516 + A-rich Low_complexity Low_complexity 2 35 0 1902 303 47 49 chr4 125889146 125889233 -58399429 + L1MB8 LINE L1 722 808 -6051 2555 218 25 39 chr4 125889263 125889860 -58398802 + L1MB8 LINE L1 635 1223 -5636 1386 245 12 3 chr4 125889873 125890216 -58398446 + L1MB8 LINE L1 5421 5766 -1191 630 135 0 0 chr4 125890218 125890314 -58398348 + AluY SINE Alu 1 96 -215 2483 208 50 34 chr4 125890418 125891165 -58397497 + L1MB8 LINE L1 5945 6704 -285 201 39 0 0 chr4 125891271 125891297 -58397365 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2696 3 0 0 chr4 125891297 125891598 -58397064 - L1PA2 LINE L1 -16 6139 5839 485 190 0 9 chr4 125892263 125892379 -58396283 + CT-rich Low_complexity Low_complexity 2 116 0 199 313 0 0 chr4 125893973 125894021 -58394641 + MIR SINE MIR 200 247 -15 766 111 24 8 chr4 125894220 125894346 -58394316 - L1PA13 LINE L1 -9 6154 6027 22 0 0 0 chr4 125894739 125894761 -58393901 + AT_rich Low_complexity Low_complexity 1 22 0 292 318 19 19 chr4 125896703 125896810 -58391852 - MER5B DNA MER1_type -69 109 3 21 71 0 0 chr4 125896830 125896872 -58391790 + AT_rich Low_complexity Low_complexity 1 42 0 213 175 0 0 chr4 125897501 125897541 -58391121 + (CA)n Simple_repeat Simple_repeat 1 40 0 555 130 0 138 chr4 125897990 125898113 -58390549 - MER41B LTR ERV1 -88 547 442 6496 86 6 0 chr4 125898115 125899009 -58389653 - L1PA14 LINE L1 -9 6152 5254 682 159 76 3 chr4 125899420 125899585 -58389077 + L1MC3 LINE L1 6944 7101 -684 236 108 27 0 chr4 125899591 125899628 -58389034 - MLT2D LTR ERVL 0 520 483 180 111 0 0 chr4 125899631 125899658 -58389004 + (TG)n Simple_repeat Simple_repeat 2 28 0 229 307 23 0 chr4 125899680 125899768 -58388894 - L1MC4 LINE L1 -1339 6703 6614 323 241 0 17 chr4 125899771 125899887 -58388775 + (CATATA)n Simple_repeat Simple_repeat 1 114 0 1719 180 88 9 chr4 125899894 125900233 -58388429 - MLT2D LTR ERVL -48 366 1 254 262 0 0 chr4 125900254 125900315 -58388347 + MLT1F1 LTR MaLR 64 124 -443 2607 213 14 12 chr4 125900325 125900911 -58387751 + L1MC3 LINE L1 7199 7785 0 184 180 60 60 chr4 125901034 125901084 -58387578 + MIR SINE MIR 198 247 -15 29 0 0 0 chr4 125902184 125902213 -58386449 + AT_rich Low_complexity Low_complexity 1 29 0 577 314 40 0 chr4 125902551 125902803 -58385859 - MIR SINE MIR 0 262 1 403 339 116 11 chr4 125902964 125903153 -58385509 + MIR SINE MIR 49 257 -5 16931 173 36 19 chr4 125903380 125905396 -58383266 + L1MA1 LINE L1 15 2108 -5457 4185 29 0 8 chr4 125905396 125905906 -58382756 + L1PA2 LINE L1 5650 6155 0 16931 173 36 19 chr4 125905906 125907069 -58381593 + L1MA1 LINE L1 2108 3249 -4316 5277 114 31 0 chr4 125907382 125908162 -58380500 - L1PA14 LINE L1 -2 6159 5356 13700 171 20 46 chr4 125908167 125910562 -58378100 + L1MA1 LINE L1 3267 5472 -2249 2096 147 0 0 chr4 125910562 125910868 -58377794 + AluSg SINE Alu 2 307 -3 13700 171 20 46 chr4 125910868 125913057 -58375605 + L1MA1 LINE L1 5472 7717 -4 25 31 0 0 chr4 125913057 125913089 -58375573 + AT_rich Low_complexity Low_complexity 1 32 0 593 280 109 5 chr4 125913507 125913718 -58374944 - MIR SINE MIR 0 262 30 23 0 0 0 chr4 125913874 125913897 -58374765 + AT_rich Low_complexity Low_complexity 1 23 0 194 174 22 0 chr4 125914813 125914859 -58373803 + (TA)n Simple_repeat Simple_repeat 1 47 0 252 361 19 13 chr4 125915110 125915268 -58373394 - MIR SINE MIR 0 262 104 639 278 86 0 chr4 125915460 125915669 -58372993 + LTR16C LTR ERVL 254 480 -11 474 310 50 31 chr4 125916023 125916281 -58372381 + HERVL LTR ERVL 362 624 -4372 1042 321 74 37 chr4 125916841 125917702 -58370960 + HERVL LTR ERVL 1341 2192 -2804 1892 149 0 13 chr4 125917702 125918010 -58370652 - AluJb SINE Alu -8 304 1 1042 321 74 37 chr4 125918010 125918065 -58370597 + HERVL LTR ERVL 2192 2244 -2752 367 351 81 23 chr4 125918117 125918510 -58370152 + HERVL LTR ERVL 2296 2711 -3053 524 306 77 6 chr4 125919050 125919220 -58369442 + MER5A DNA MER1_type 7 188 -1 303 368 108 4 chr4 125919700 125919950 -58368712 + L2 LINE L2 3019 3294 -19 361 111 0 0 chr4 125919953 125920007 -58368655 + MADE1 DNA Mariner 27 80 0 2070 110 3 7 chr4 125921066 125921358 -58367304 - AluSq SINE Alu -22 291 1 200 362 96 37 chr4 125923608 125923754 -58364908 - L3 LINE CR1 -380 1197 1036 1021 184 41 133 chr4 125923754 125924166 -58364496 + MLT1A2 LTR MaLR 1 374 0 200 362 96 37 chr4 125924166 125924207 -58364455 - L3 LINE CR1 -541 1036 999 31 68 0 0 chr4 125924990 125925049 -58363613 + AT_rich Low_complexity Low_complexity 1 59 0 25 31 0 0 chr4 125925457 125925489 -58363173 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr4 125926656 125926680 -58361982 + AT_rich Low_complexity Low_complexity 1 24 0 496 314 93 0 chr4 125927334 125927506 -58361156 - MIR SINE MIR -11 251 64 27 49 0 0 chr4 125927982 125928023 -58360639 + AT_rich Low_complexity Low_complexity 1 41 0 266 253 23 0 chr4 125928109 125928196 -58360466 + L1MC4 LINE L1 6615 6703 -1339 23 68 0 0 chr4 125928839 125928883 -58359779 + AT_rich Low_complexity Low_complexity 1 44 0 22 70 0 0 chr4 125929029 125929072 -58359590 + AT_rich Low_complexity Low_complexity 1 43 0 263 333 50 10 chr4 125929457 125929556 -58359106 - MIR SINE MIR -82 126 24 26 50 0 0 chr4 125929630 125929670 -58358992 + AT_rich Low_complexity Low_complexity 1 40 0 244 302 127 16 chr4 125929950 125930076 -58358586 - MIR SINE MIR -71 191 52 23 68 0 0 chr4 125930207 125930251 -58358411 + AT_rich Low_complexity Low_complexity 1 44 0 317 330 58 70 chr4 125930661 125931006 -58357656 - MLT1J2 LTR MaLR -27 423 83 279 0 0 0 chr4 125931274 125931305 -58357357 + (TC)n Simple_repeat Simple_repeat 2 32 0 689 242 87 40 chr4 125932613 125932911 -58355751 - MER33 DNA MER1_type 0 324 13 3447 163 26 38 chr4 125934740 125935495 -58353167 - L1MA9 LINE L1 0 6312 5567 2508 218 145 82 chr4 125935501 125935724 -58352938 + LTR28 LTR ERV1 1 209 -811 2026 125 0 0 chr4 125935724 125936048 -58352614 + AluSg SINE Alu 1 324 0 2508 218 145 82 chr4 125936048 125936783 -58351879 + LTR28 LTR ERV1 209 1020 0 1485 188 2 45 chr4 125936783 125937262 -58351400 - L1MA9 LINE L1 -743 5403 5104 1910 193 64 10 chr4 125937266 125937670 -58350992 + MSTB LTR MaLR 1 426 0 7816 200 45 5 chr4 125937712 125939254 -58349408 + MSTB-int LTR MaLR 28 1631 -20 1130 176 86 5 chr4 125939254 125939475 -58349187 + MSTA LTR MaLR 190 428 0 1616 229 50 7 chr4 125939478 125939937 -58348725 - L1MA9 LINE L1 -1045 5101 4623 2073 86 0 4 chr4 125940352 125940621 -58348041 - AluY SINE Alu -15 296 29 34 42 0 0 chr4 125940998 125941046 -58347616 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr4 125941103 125941125 -58347537 + AT_rich Low_complexity Low_complexity 1 22 0 458 293 116 33 chr4 125941320 125941836 -58346826 - HAL1b LINE L1 -565 783 225 246 277 12 0 chr4 125942855 125942938 -58345724 + L1ME4a LINE L1 5965 6048 -73 1449 155 7 45 chr4 125943978 125944268 -58344394 + L1MC1 LINE L1 6037 6315 -18 1944 155 134 8 chr4 125944454 125944834 -58343828 - MSTA LTR MaLR 0 428 1 8728 161 11 35 chr4 125944834 125946432 -58342230 - MSTA-int LTR MaLR 0 1580 22 1866 155 142 21 chr4 125946438 125946818 -58341844 - MSTA LTR MaLR -2 426 1 25 31 0 0 chr4 125947865 125947897 -58340765 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr4 125948868 125948890 -58339772 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr4 125949069 125949093 -58339569 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr4 125949207 125949232 -58339430 + AT_rich Low_complexity Low_complexity 1 25 0 1443 210 43 20 chr4 125952056 125952356 -58336306 - AluJb SINE Alu -5 307 1 832 233 153 7 chr4 125952560 125952840 -58335822 + MLT1C LTR MaLR 136 505 0 1575 204 0 3 chr4 125952870 125953169 -58335493 + AluJo SINE Alu 3 300 -12 226 264 83 0 chr4 125953273 125953345 -58335317 + L1ME LINE L1 3500 3577 -2569 940 254 92 34 chr4 125953386 125953834 -58334828 + L1ME LINE L1 3664 4137 -2009 248 169 15 31 chr4 125953835 125953900 -58334762 + A-rich Low_complexity Low_complexity 3 66 0 272 242 44 0 chr4 125953902 125953993 -58334669 + L1ME LINE L1 4160 4254 -1892 403 136 0 0 chr4 125954027 125954093 -58334569 + L1MC1 LINE L1 5388 5453 -880 3868 184 29 40 chr4 125954198 125955059 -58333603 + L1MC1 LINE L1 5462 6313 -20 832 259 109 69 chr4 125955079 125955494 -58333168 + L1ME LINE L1 4279 4676 -1470 1803 142 4 0 chr4 125955494 125955768 -58332894 + AluSx SINE Alu 1 275 -37 832 259 109 69 chr4 125955768 125956264 -58332398 + L1ME LINE L1 4676 5226 -920 186 43 0 0 chr4 125956292 125956315 -58332347 + (CA)n Simple_repeat Simple_repeat 2 24 0 1926 163 9 86 chr4 125956355 125956810 -58331852 + L1MA5A LINE L1 5878 6297 0 704 272 76 5 chr4 125956813 125957037 -58331625 + L1ME LINE L1 5330 5569 -595 1319 188 173 14 chr4 125957040 125957461 -58331201 + L1MCa LINE L1 1745 2232 -4194 1200 231 38 120 chr4 125957602 125958493 -58330169 + L1MC4 LINE L1 7207 8024 -18 22 0 0 0 chr4 125958743 125958765 -58329897 + AT_rich Low_complexity Low_complexity 1 22 0 564 126 11 0 chr4 125958992 125959079 -58329583 + AluS SINE Alu 1 88 -224 225 226 129 21 chr4 126159370 126159463 -58129199 - L1MC4 LINE L1 -1333 6709 6607 390 285 32 0 chr4 126160210 126160333 -58128329 + L1MDa LINE L1 19 145 -6395 1975 71 0 0 chr4 126160435 126160689 -58127973 + L1PA7 LINE L1 5898 6151 -3 3506 235 31 32 chr4 126160689 126161782 -58126880 + L1 LINE L1 2383 3474 -2672 227 275 50 0 chr4 126161886 126161966 -58126696 + L1MC4 LINE L1 6615 6698 -1344 * 241 226 0 16 chr4 126161924 126161986 -58126676 - L1MCa LINE L1 -4358 2068 2008 * 254 267 47 0 chr4 126161957 126162043 -58126619 - L1MC4 LINE L1 -1339 6983 6894 * 290 273 23 0 chr4 126161969 126162057 -58126605 + L1MC4 LINE L1 6614 6703 -1339 741 279 5 19 chr4 126162477 126162692 -58125970 - MER58A DNA MER1_type -12 212 1 39 22 0 0 chr4 126163659 126163705 -58124957 + AT_rich Low_complexity Low_complexity 1 46 0 352 344 77 35 chr4 126163871 126164130 -58124532 - L1ME3 LINE L1 -278 5884 5615 873 236 105 23 chr4 126164595 126164658 -58124004 - L1MD1 LINE L1 0 6242 6186 2136 119 3 0 chr4 126164658 126164961 -58123701 + AluY SINE Alu 1 304 -7 1510 218 7 3 chr4 126164969 126165277 -58123385 + AluJo SINE Alu 3 311 -1 873 236 105 23 chr4 126165277 126165509 -58123153 - L1MD1 LINE L1 -62 6180 5913 * 2351 225 59 22 chr4 126165500 126166131 -58122531 - L1M2 LINE L1 -4282 2567 1910 1134 110 43 0 chr4 126166131 126166295 -58122367 + L1PA11 LINE L1 5995 6165 -9 3233 199 37 45 chr4 126166295 126167316 -58121346 + L1MA5 LINE L1 4617 5572 -733 1349 137 4 4 chr4 126167316 126167543 -58121119 + L1MA5 LINE L1 6062 6288 -12 3233 199 37 45 chr4 126167543 126167728 -58120934 + L1MA5 LINE L1 5572 5757 -548 1213 237 78 5 chr4 126167742 126168182 -58120480 - L1MD1 LINE L1 -309 5933 5429 230 133 83 0 chr4 126168830 126168890 -58119772 - L1MD3 LINE L1 -896 7099 7035 760 348 62 15 chr4 126169440 126169908 -58118754 + L2 LINE L2 2804 3293 -20 484 284 84 0 chr4 126170973 126171128 -58117534 + LTR50 LTR ERVL 7 174 -621 828 276 107 19 chr4 126171257 126171630 -58117032 + LTR50 LTR ERVL 387 792 -3 2342 88 0 0 chr4 126172759 126173064 -58115598 - AluY SINE Alu -6 305 1 23 0 0 0 chr4 126173411 126173434 -58115228 + AT_rich Low_complexity Low_complexity 1 23 0 29 28 0 0 chr4 126173867 126173903 -58114759 + AT_rich Low_complexity Low_complexity 1 36 0 979 164 58 112 chr4 126174106 126174418 -58114244 - L1P5 LINE L1 -340 5816 5522 2010 156 42 28 chr4 126174418 126174771 -58113891 + THE1B LTR MaLR 1 358 -6 3663 184 13 24 chr4 126174814 126175279 -58113383 - L1P5 LINE L1 -637 5519 5071 1753 185 3 0 chr4 126175279 126175581 -58113081 - AluJb SINE Alu -9 303 1 3663 184 13 24 chr4 126175581 126176062 -58112600 - L1P5 LINE L1 -1085 5071 4587 581 243 12 12 chr4 126176043 126176212 -58112450 + L1 LINE L1 4470 4638 -1508 * 24 0 0 0 chr4 126176297 126176321 -58112341 + AT_rich Low_complexity Low_complexity 1 24 0 431 62 0 31 chr4 126176781 126176845 -58111817 + MADE1 DNA Mariner 19 80 0 457 174 0 35 chr4 126176845 126176931 -58111731 + FRAM SINE Alu 35 117 -59 29 28 0 0 chr4 126177364 126177400 -58111262 + AT_rich Low_complexity Low_complexity 1 36 0 4209 87 5 0 chr4 126177402 126177979 -58110683 - L1P LINE L1 -1538 4608 4029 1249 247 12 7 chr4 126178248 126178653 -58110009 - L1 LINE L1 -2940 3206 2800 2897 256 22 4 chr4 126178657 126179439 -58109223 + L1P LINE L1 1935 2730 -3416 26 50 0 0 chr4 126179445 126179485 -58109177 + AT_rich Low_complexity Low_complexity 1 40 0 1267 173 19 117 chr4 126180304 126180667 -58107995 - AluSx SINE Alu 0 331 1 40 49 0 0 chr4 126182886 126182947 -58105715 + AT_rich Low_complexity Low_complexity 1 61 0 321 68 0 0 chr4 126183210 126183254 -58105408 + (TG)n Simple_repeat Simple_repeat 1 44 0 2097 170 8 13 chr4 126186165 126186542 -58102120 + THE1C LTR MaLR 1 375 0 8799 137 72 7 chr4 126186542 126188025 -58100637 + THE1C-int LTR MaLR 1 1580 0 2170 155 16 13 chr4 126188025 126188399 -58100263 + THE1C LTR MaLR 1 375 0 2031 134 0 0 chr4 126188456 126188739 -58099923 + AluSc SINE Alu 6 288 -21 328 361 76 61 chr4 126190579 126190989 -58097673 + L2 LINE L2 2470 2885 -429 328 361 41 56 chr4 126191084 126191101 -58097561 + L2 LINE L2 2996 3012 -260 1823 141 4 0 chr4 126191101 126191408 -58097254 - AluSx SINE Alu 0 313 6 328 361 41 56 chr4 126191408 126191655 -58097007 + L2 LINE L2 3012 3257 -15 245 147 0 0 chr4 126192880 126192914 -58095748 + HAL1b LINE L1 1229 1262 -86 3728 102 13 2 chr4 126192948 126193498 -58095164 + L1PA13 LINE L1 5601 6156 -7 395 344 21 10 chr4 126194934 126195126 -58093536 - LTR67 LTR ERVL -13 544 351 3370 230 52 13 chr4 126195799 126196677 -58091985 + L1MB8 LINE L1 4871 5813 -365 297 0 0 0 chr4 126196677 126196710 -58091952 + (CA)n Simple_repeat Simple_repeat 2 34 0 3370 230 52 13 chr4 126196710 126197083 -58091579 + L1MB8 LINE L1 5813 6170 -8 27 73 0 0 chr4 126197749 126197804 -58090858 + AT_rich Low_complexity Low_complexity 1 55 0 2357 264 61 44 chr4 126197956 126200509 -58088153 + L1ME1 LINE L1 3591 6162 -4 1790 182 18 21 chr4 126200834 126201174 -58087488 - MER2 DNA MER2_type -6 339 1 6749 211 47 26 chr4 126202111 126203758 -58084904 - L1MC3 LINE L1 -15 7770 6090 22 35 0 0 chr4 126204001 126204030 -58084632 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr4 126204958 126204986 -58083676 + AT_rich Low_complexity Low_complexity 1 28 0 303 291 43 26 chr4 126204990 126205107 -58083555 - MIR SINE MIR -1 261 143 237 231 39 0 chr4 126207939 126208017 -58080645 + (TAA)n Simple_repeat Simple_repeat 1 81 0 662 148 172 0 chr4 126208138 126208260 -58080402 - L1PB4 LINE L1 -12 6144 6002 342 0 0 0 chr4 126208352 126208390 -58080272 + (CA)n Simple_repeat Simple_repeat 2 39 0 42 36 0 0 chr4 126208435 126208491 -58080171 + AT_rich Low_complexity Low_complexity 1 56 0 283 346 80 38 chr4 126208567 126208917 -58079745 - L2 LINE L2 -221 3051 2683 333 271 55 33 chr4 126209416 126209597 -58079065 + L1MC/D LINE L1 5295 5479 -2563 219 234 0 0 chr4 126209840 126209887 -58078775 + (TG)n Simple_repeat Simple_repeat 2 48 0 378 288 18 88 chr4 126209976 126210146 -58078516 + MLT1J LTR MaLR 244 401 -110 371 242 53 68 chr4 126212437 126212569 -58076093 - MER91C DNA MER1_type -10 130 1 631 197 39 0 chr4 126212878 126213005 -58075657 - FLAM_C SINE Alu 0 133 2 392 237 64 71 chr4 126213340 126213573 -58075089 - L1ME3 LINE L1 -169 5997 5767 267 319 44 26 chr4 126214489 126214602 -58074060 - L2 LINE L2 0 3272 3158 41 21 0 0 chr4 126214777 126214825 -58073837 + AT_rich Low_complexity Low_complexity 1 48 0 296 179 11 42 chr4 126214936 126215031 -58073631 + (TTTAA)n Simple_repeat Simple_repeat 4 95 0 1883 233 29 31 chr4 126215469 126215605 -58073057 - MER82 DNA MER2_type -1 652 517 2193 96 3 0 chr4 126215605 126215907 -58072755 + AluSc SINE Alu 1 303 -6 1883 233 29 31 chr4 126215907 126216221 -58072441 - MER82 DNA MER2_type -136 517 203 319 324 35 29 chr4 126216486 126216656 -58072006 + Tigger2 DNA MER2_type 1040 1210 -1508 866 200 50 30 chr4 126216746 126216946 -58071716 - MER82 DNA MER2_type -449 204 1 2337 59 0 47 chr4 126216948 126217268 -58071394 - AluY SINE Alu -6 305 1 985 239 15 0 chr4 126217668 126217869 -58070793 + MER58A DNA MER1_type 2 205 -19 2028 247 60 8 chr4 126218412 126218943 -58069719 - MLT1F1 LTR MaLR -8 559 1 205 343 139 40 chr4 126219959 126220233 -58068429 + L2 LINE L2 3010 3310 -3 193 305 19 57 chr4 126220817 126220922 -58067740 + MIR SINE MIR 45 145 -117 216 86 0 0 chr4 126221217 126221252 -58067410 + (TG)n Simple_repeat Simple_repeat 2 36 0 24 96 0 0 chr4 126226800 126226873 -58061789 + AT_rich Low_complexity Low_complexity 1 73 0 203 156 0 0 chr4 126227161 126227193 -58061469 + A-rich Low_complexity Low_complexity 4 35 0 236 259 19 0 chr4 126228473 126228527 -58060135 + (ATGGTG)n Simple_repeat Simple_repeat 3 57 0 1640 176 0 45 chr4 126228561 126228914 -58059748 - MER44D DNA MER2_type -2 607 1 22 0 0 0 chr4 126228954 126228976 -58059686 + AT_rich Low_complexity Low_complexity 1 22 0 341 196 75 0 chr4 126229077 126229210 -58059452 + (TA)n Simple_repeat Simple_repeat 2 144 0 24 0 0 0 chr4 126229392 126229416 -58059246 + AT_rich Low_complexity Low_complexity 1 24 0 1218 186 117 8 chr4 126229513 126229777 -58058885 - AluJo SINE Alu -7 295 3 4367 113 81 55 chr4 126232116 126232920 -58055742 + LTR12 LTR ERV1 1 825 -1 929 99 15 0 chr4 126232921 126233052 -58055610 + LTR12 LTR ERV1 582 714 0 2261 247 77 21 chr4 126233146 126234085 -58054577 + L1MDa LINE L1 991 1981 -4559 4380 219 26 40 chr4 126234103 126236246 -58052416 - L1MC2 LINE L1 -22 6322 4207 263 200 80 0 chr4 126236248 126236323 -58052339 + LTR52 LTR ERVL 18 98 -323 2939 231 20 83 chr4 126236323 126236906 -58051756 + L1MD2 LINE L1 5410 5905 -454 1601 53 0 10 chr4 126236906 126237113 -58051549 + L1PA2 LINE L1 5951 6155 0 2939 231 20 83 chr4 126237113 126237530 -58051132 + L1MD2 LINE L1 5905 6347 -12 265 232 54 20 chr4 126237537 126237740 -58050922 - HAL1b LINE L1 -74 1274 1032 181 365 78 9 chr4 126237857 126237972 -58050690 - MIR SINE MIR -93 169 47 21 0 0 0 chr4 126238444 126238465 -58050197 + AT_rich Low_complexity Low_complexity 1 21 0 340 320 39 45 chr4 126238737 126238893 -58049769 + MER5A DNA MER1_type 35 189 0 2816 171 9 25 chr4 126238987 126239553 -58049109 - L1MA5 LINE L1 0 6300 5744 4366 191 73 8 chr4 126239554 126240540 -58048122 + L1 LINE L1 3317 4366 -1780 2270 62 3 26 chr4 126240829 126241135 -58047527 - AluY SINE Alu 0 311 13 42 86 0 0 chr4 126241227 126241332 -58047330 + AT_rich Low_complexity Low_complexity 1 105 0 6922 164 15 17 chr4 126241345 126243683 -58044979 - L1PB1 LINE L1 -1 6150 3822 603 294 14 58 chr4 126244440 126244733 -58043929 - L2 LINE L2 -12 3301 3022 372 77 0 0 chr4 126245343 126245395 -58043267 + (TG)n Simple_repeat Simple_repeat 2 53 0 312 102 0 0 chr4 126245629 126245678 -58042984 + (CA)n Simple_repeat Simple_repeat 2 50 0 25 31 0 0 chr4 126245897 126245929 -58042733 + AT_rich Low_complexity Low_complexity 1 32 0 5696 219 32 39 chr4 126245934 126247100 -58041562 - L1MC1 LINE L1 -1 6332 5160 1926 121 4 4 chr4 126247100 126247418 -58041244 - AluY SINE Alu 0 318 1 5696 219 32 39 chr4 126247418 126249205 -58039457 - L1MC1 LINE L1 -1173 5160 3401 21 0 0 0 chr4 126249217 126249238 -58039424 + AT_rich Low_complexity Low_complexity 1 21 0 186 379 138 7 chr4 126249413 126249558 -58039104 + MIR3 SINE MIR 21 184 -24 1236 296 116 38 chr4 126249796 126250329 -58038333 - MLT1E LTR MaLR -2 591 17 351 339 93 46 chr4 126250442 126251460 -58037202 + L1MEc LINE L1 584 1649 -5176 226 266 23 79 chr4 126251454 126251631 -58037031 + L1MEc LINE L1 1523 1689 -4853 * 2619 153 9 32 chr4 126251770 126252049 -58036613 + MER31A LTR ERV1 33 298 -187 2254 79 0 7 chr4 126252049 126252365 -58036297 - AluY SINE Alu 0 311 1 2619 153 9 32 chr4 126252365 126252549 -58036113 + MER31A LTR ERV1 298 485 0 282 286 54 36 chr4 126252564 126252663 -58035999 + L1MEc LINE L1 1906 2011 -4814 187 30 30 30 chr4 126252663 126252696 -58035966 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 282 286 54 36 chr4 126252696 126252764 -58035898 + L1MEc LINE L1 2011 2076 -4749 * 875 199 82 19 chr4 126252753 126252959 -58035703 + L1MC1 LINE L1 6115 6333 0 319 280 33 13 chr4 126252952 126253102 -58035560 + L1MEc LINE L1 2054 2206 -4619 * 376 345 93 31 chr4 126253239 126254013 -58034649 + L1MEc LINE L1 107 928 -5468 879 172 96 72 chr4 126254041 126254291 -58034371 - L1MA7 LINE L1 -25 6266 6011 453 298 64 0 chr4 126254287 126254505 -58034157 + L1MEc LINE L1 912 1143 -5253 * 1237 374 85 24 chr4 126256174 126257019 -58031643 + L2 LINE L2 1890 2819 -453 1644 175 47 78 chr4 126257019 126257465 -58031197 - MSTB1 LTR MaLR 0 432 1 1237 374 85 24 chr4 126257465 126257722 -58030940 + L2 LINE L2 2819 3059 -213 244 303 0 22 chr4 126257961 126258050 -58030612 - L2 LINE L2 0 3313 3227 1046 231 49 40 chr4 126258289 126258618 -58030044 + MER110 LTR ERV1 127 458 -33 190 309 24 49 chr4 126259898 126260021 -58028641 + MIR SINE MIR 87 206 -56 1551 193 20 10 chr4 126260662 126260968 -58027694 + AluJb SINE Alu 4 312 0 1371 253 75 97 chr4 126261005 126261883 -58026779 + L1MC2 LINE L1 7 865 -5180 1077 252 30 27 chr4 126261909 126262238 -58026424 + MLT1B LTR MaLR 61 390 0 2139 228 62 19 chr4 126262261 126262928 -58025734 + L1MC2 LINE L1 894 1588 -4976 180 0 0 0 chr4 126262930 126262950 -58025712 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 2070 205 261 11 chr4 126262969 126263224 -58025438 + L1MC2 LINE L1 1641 1831 -4733 1813 158 33 87 chr4 126263224 126263674 -58024988 + MSTA LTR MaLR 3 428 0 2070 205 261 11 chr4 126263674 126264164 -58024498 + L1MC2 LINE L1 1831 2573 -3991 6644 250 74 19 chr4 126264211 126265924 -58022738 + L1MC2 LINE L1 2579 4197 -2565 1901 94 4 18 chr4 126265924 126266200 -58022462 + AluSc SINE Alu 29 300 -9 6644 250 74 19 chr4 126266200 126268364 -58020298 + L1MC2 LINE L1 4197 6755 -7 230 270 101 0 chr4 126268548 126268637 -58020025 - MIR SINE MIR -47 215 118 281 133 33 0 chr4 126268773 126268833 -58019829 + (TATATG)n Simple_repeat Simple_repeat 6 67 0 234 0 0 0 chr4 126268931 126268957 -58019705 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 394 294 65 18 chr4 126269581 126269751 -58018911 + L2 LINE L2 3130 3307 -6 319 314 39 0 chr4 126270526 126270628 -58018034 - MIR SINE MIR -69 139 34 39 22 0 0 chr4 126270671 126270717 -58017945 + AT_rich Low_complexity Low_complexity 1 46 0 340 337 132 19 chr4 126270800 126271005 -58017657 - MIR SINE MIR -21 241 14 210 237 0 0 chr4 126271219 126271257 -58017405 + polypyrimidine Low_complexity Low_complexity 4 41 0 216 261 0 45 chr4 126272350 126272438 -58016224 + T-rich Low_complexity Low_complexity 4 87 0 1957 137 7 3 chr4 126272544 126272857 -58015805 - AluSx SINE Alu 0 314 1 381 331 38 24 chr4 126273034 126273334 -58015328 - MLT1J LTR MaLR -172 274 9 33 25 0 0 chr4 126273773 126273813 -58014849 + AT_rich Low_complexity Low_complexity 1 40 0 2191 100 3 22 chr4 126274116 126274435 -58014227 - AluSq SINE Alu 0 313 1 22 35 0 0 chr4 126274746 126274775 -58013887 + AT_rich Low_complexity Low_complexity 1 29 0 285 276 66 0 chr4 126274822 126274898 -58013764 + L2 LINE L2 3229 3309 -4 22 0 0 0 chr4 126274905 126274927 -58013735 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr4 126274968 126274996 -58013666 + AT_rich Low_complexity Low_complexity 1 28 0 243 0 0 0 chr4 126275033 126275060 -58013602 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1936 139 0 4 chr4 126275063 126275343 -58013319 - AluSg SINE Alu -31 279 1 1299 315 134 19 chr4 126275673 126275899 -58012763 + L2 LINE L2 2303 2502 -811 2382 59 0 7 chr4 126275899 126276202 -58012460 - AluY SINE Alu -10 301 1 1299 315 134 19 chr4 126276202 126276866 -58011796 + L2 LINE L2 2502 3312 -1 241 264 0 0 chr4 126277192 126277245 -58011417 + L2 LINE L2 3261 3313 0 436 250 146 54 chr4 126277361 126277601 -58011061 - MIR SINE MIR 0 262 1 182 91 30 0 chr4 126277867 126277900 -58010762 + (TA)n Simple_repeat Simple_repeat 1 34 0 273 167 0 0 chr4 126278339 126278393 -58010269 + (TA)n Simple_repeat Simple_repeat 1 54 0 1182 243 57 23 chr4 126278618 126279095 -58009567 - L1MC5 LINE L1 -211 7750 7258 2172 111 3 16 chr4 126281895 126282210 -58006452 - AluSx SINE Alu -1 311 1 917 280 82 70 chr4 126283942 126285159 -58003503 + L1ME LINE L1 532 1813 -4448 1060 197 47 131 chr4 126285159 126285565 -58003097 - MLT1A2 LTR MaLR -2 372 1 917 280 82 70 chr4 126285565 126285622 -58003040 + L1ME LINE L1 1813 1868 -4393 23 33 0 0 chr4 126287897 126287927 -58000735 + AT_rich Low_complexity Low_complexity 1 30 0 725 221 59 28 chr4 126288990 126289244 -57999418 + LTR37B LTR ERV1 199 460 -8 209 255 49 39 chr4 126289910 126290012 -57998650 + MIR3 SINE MIR 102 204 -4 213 132 0 0 chr4 126290370 126290408 -57998254 + (TG)n Simple_repeat Simple_repeat 1 38 0 21 36 0 0 chr4 126290976 126291004 -57997658 + AT_rich Low_complexity Low_complexity 1 28 0 1987 188 52 77 chr4 126291939 126292497 -57996165 + MLT2B3 LTR ERVL 1 544 -10 33604 156 21 10 chr4 126292503 126294044 -57994618 + HERVL-B3-B3 LTR ERVL 1 1524 -4130 4707 56 5 2 chr4 126294044 126294633 -57994029 + LTR10C LTR ERV1 1 591 0 33604 156 21 10 chr4 126294633 126298683 -57989979 + HERVL-B3-B3 LTR ERVL 1524 5654 0 2362 200 19 67 chr4 126298687 126299256 -57989406 + MLT2B3 LTR ERVL 5 546 -8 353 277 163 30 chr4 126299954 126300120 -57988542 - MER5A DNA MER1_type 0 189 2 378 0 0 0 chr4 126301179 126301221 -57987441 + (CA)n Simple_repeat Simple_repeat 2 43 0 748 259 67 57 chr4 126302673 126303059 -57985603 - HAL1 LINE L1 -272 2235 1846 1734 295 92 41 chr4 126303114 126304443 -57984219 - HAL1 LINE L1 -797 1710 315 39 22 0 0 chr4 126304634 126304680 -57983982 + AT_rich Low_complexity Low_complexity 1 46 0 30 0 0 0 chr4 126305221 126305251 -57983411 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 126306045 126306066 -57982596 + AT_rich Low_complexity Low_complexity 1 21 0 3689 220 33 19 chr4 126306930 126308172 -57980490 - L1MB8 LINE L1 -5 6984 5727 868 229 5 25 chr4 126308168 126308369 -57980293 + L1M4 LINE L1 4748 4944 -1202 * 1217 206 64 58 chr4 126308367 126308867 -57979795 - L1MB8 LINE L1 -2944 4013 3511 * 1967 157 32 19 chr4 126308864 126309492 -57979170 - L1M1 LINE L1 -743 5403 4919 396 152 15 0 chr4 126309494 126309560 -57979102 + L1M1 LINE L1 4848 4914 -1232 * 1167 279 51 13 chr4 126309557 126310087 -57978575 - L1MB8 LINE L1 -4825 2134 1585 2859 70 22 132 chr4 126310088 126310633 -57978029 - L1PB1 LINE L1 -5 6146 5662 2661 213 16 6 chr4 126310640 126311269 -57977393 + L1 LINE L1 4769 5403 -743 * 4487 223 19 51 chr4 126311266 126312434 -57976228 - L1MB8 LINE L1 -5228 1631 502 305 280 11 21 chr4 126312474 126312567 -57976095 - MLT1J2 LTR MaLR -291 159 68 321 89 0 0 chr4 126312598 126312643 -57976019 + (TG)n Simple_repeat Simple_repeat 2 46 0 214 236 56 14 chr4 126312643 126312715 -57975947 + (CATATA)n Simple_repeat Simple_repeat 2 76 0 2656 195 7 3 chr4 126312895 126313381 -57975281 - MLT2B1 LTR ERVL -19 535 1 1102 226 63 0 chr4 126313443 126313695 -57974967 - MLT1C LTR MaLR 0 467 200 1403 263 31 45 chr4 126314021 126314671 -57973991 + L1MC4a LINE L1 5263 5903 -1905 29 60 0 0 chr4 126314818 126314868 -57973794 + AT_rich Low_complexity Low_complexity 1 50 0 576 288 119 14 chr4 126314943 126315305 -57973357 + L1MC4a LINE L1 5508 5818 -303 752 186 0 0 chr4 126315638 126315779 -57972883 + FLAM_C SINE Alu 1 141 0 757 297 56 56 chr4 126315799 126316230 -57972432 - L2 LINE L2 -1404 1910 1480 256 182 0 18 chr4 126316759 126316814 -57971848 - MLT1F1 LTR MaLR -12 555 502 3221 61 40 5 chr4 126317089 126317518 -57971144 - MLT2A1 LTR ERVL 0 444 1 2123 210 98 44 chr4 126317556 126317826 -57970836 + MER77 LTR ERV1 3 257 -348 1949 103 43 7 chr4 126317826 126318108 -57970554 + AluSp SINE Alu 3 294 -19 2123 210 98 44 chr4 126318108 126318409 -57970253 + MER77 LTR ERV1 257 605 0 26 0 0 0 chr4 126319114 126319140 -57969522 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr4 126319198 126319221 -57969441 + AT_rich Low_complexity Low_complexity 1 23 0 261 0 0 0 chr4 126319309 126319338 -57969324 + (CA)n Simple_repeat Simple_repeat 2 30 0 371 288 104 49 chr4 126319952 126320349 -57968313 - L1MC4a LINE L1 -28 6093 5689 554 121 0 10 chr4 126321629 126321728 -57966934 + (TTCC)n Simple_repeat Simple_repeat 2 99 0 25 51 0 0 chr4 126321888 126321927 -57966735 + AT_rich Low_complexity Low_complexity 1 39 0 16343 35 7 1 chr4 126322408 126325164 -57963498 - L1PA4 LINE L1 0 6155 3388 22 35 0 0 chr4 126325645 126325674 -57962988 + AT_rich Low_complexity Low_complexity 1 29 0 204 67 0 0 chr4 126325720 126325750 -57962912 + (TATAG)n Simple_repeat Simple_repeat 4 33 0 393 373 21 0 chr4 126326027 126326169 -57962493 + L3 LINE CR1 1015 1159 -418 230 341 12 12 chr4 126326215 126326300 -57962362 + L3 LINE CR1 1342 1426 -151 2266 95 0 0 chr4 126326796 126327079 -57961583 - AluSc SINE Alu -26 283 1 23 68 0 0 chr4 126327152 126327196 -57961466 + AT_rich Low_complexity Low_complexity 1 44 0 21 71 0 0 chr4 126327239 126327281 -57961381 + AT_rich Low_complexity Low_complexity 1 42 0 2220 134 24 0 chr4 126328296 126328624 -57960038 - THE1B LTR MaLR -27 337 2 227 230 40 0 chr4 126328896 126328970 -57959692 - L1MC/D LINE L1 -2001 5807 5731 24 0 0 0 chr4 126330125 126330149 -57958513 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr4 126331824 126331847 -57956815 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1560 175 3 80 chr4 126332430 126332768 -57955894 + MLT1A1 LTR MaLR 1 312 -53 204 40 0 0 chr4 126332785 126332810 -57955852 + (TTA)n Simple_repeat Simple_repeat 3 27 0 8661 27 7 0 chr4 126332810 126334603 -57954059 - L1PA3 LINE L1 -18 6137 4340 508 133 0 0 chr4 126334603 126334678 -57953984 + MLT1A1 LTR MaLR 291 365 0 258 393 25 8 chr4 126336124 126336246 -57952416 - MIR SINE MIR -111 151 28 1415 184 170 14 chr4 126336400 126336830 -57951832 + LTR54B LTR ERV1 1 497 -1 208 143 29 0 chr4 126337919 126337954 -57950708 + MIR SINE MIR 217 252 -10 2340 93 0 3 chr4 126338003 126338304 -57950358 - AluSq SINE Alu -13 300 1 204 125 0 0 chr4 126338510 126338542 -57950120 + (T)n Simple_repeat Simple_repeat 1 32 0 251 200 0 0 chr4 126339684 126339734 -57948928 + MIR SINE MIR 212 261 -1 23 0 0 0 chr4 126340264 126340287 -57948375 + AT_rich Low_complexity Low_complexity 1 23 0 360 273 115 30 chr4 126342512 126342677 -57945985 + MIR SINE MIR 74 252 -10 821 279 51 69 chr4 126344203 126344442 -57944220 - MLT1J LTR MaLR 0 511 282 3196 240 77 41 chr4 126344442 126344579 -57944083 - MER45B DNA AcHobo -541 1040 909 1600 195 34 0 chr4 126344579 126344877 -57943785 - AluJb SINE Alu -4 308 1 3196 240 77 41 chr4 126344877 126345739 -57942923 - MER45B DNA AcHobo -672 909 5 821 279 51 69 chr4 126345739 126345950 -57942712 - MLT1J LTR MaLR -229 282 69 14277 90 2 1 chr4 126346103 126348877 -57939785 + L1PA7 LINE L1 3367 6153 -1 205 305 76 29 chr4 126349159 126349264 -57939398 - MIR SINE MIR -70 192 83 22 0 0 0 chr4 126349626 126349648 -57939014 + AT_rich Low_complexity Low_complexity 1 22 0 263 282 35 0 chr4 126349663 126349748 -57938914 + MER82 DNA MER2_type 11 98 -555 236 380 35 9 chr4 126349877 126349990 -57938672 - MIR SINE MIR -116 146 31 813 228 28 33 chr4 126350050 126350078 -57938584 + MER82 DNA MER2_type 444 471 -182 2330 128 11 19 chr4 126350078 126350444 -57938218 + THE1B LTR MaLR 1 363 -1 813 228 28 33 chr4 126350444 126350626 -57938036 + MER82 DNA MER2_type 471 653 0 840 177 8 174 chr4 126351022 126351287 -57937375 + MER52A LTR ERV1 666 886 -869 * 845 192 98 60 chr4 126351285 126351519 -57937143 + MER52A LTR ERV1 1073 1315 -440 260 292 0 0 chr4 126351561 126351626 -57937036 + MER52A LTR ERV1 1283 1347 -408 3794 127 79 81 chr4 126351802 126353187 -57935475 + pTR5 LTR ERV1 66 2438 0 501 245 42 99 chr4 126353209 126353421 -57935241 + MER52A LTR ERV1 1352 1551 -204 318 337 101 47 chr4 126353544 126353841 -57934821 - L2 LINE L2 -424 2890 2578 1999 245 120 28 chr4 126354850 126355740 -57932922 + L1MCa LINE L1 3 920 -5125 1759 244 22 2 chr4 126355736 126356233 -57932429 + L1 LINE L1 3955 4461 -1685 * 25734 63 2 5 chr4 126356378 126358248 -57930414 - L1P LINE L1 -2802 3344 1487 1576 69 0 20 chr4 126358248 126358452 -57930210 - AluY SINE Alu -6 305 106 25734 63 2 5 chr4 126358452 126359929 -57928733 - L1P LINE L1 -4659 1487 7 22 35 0 0 chr4 126360015 126360044 -57928618 + AT_rich Low_complexity Low_complexity 1 29 0 722 261 44 17 chr4 126363319 126363499 -57925163 + MER5A DNA MER1_type 1 185 -4 24 0 0 0 chr4 126363549 126363573 -57925089 + AT_rich Low_complexity Low_complexity 1 24 0 2014 155 126 5 chr4 126363620 126364001 -57924661 - MSTA LTR MaLR -1 427 1 3912 150 5 65 chr4 126364001 126364749 -57923913 - MSTA-int LTR MaLR 0 1580 878 264 59 0 0 chr4 126364958 126364992 -57923670 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 275 195 24 0 chr4 126365068 126365150 -57923512 + (CATATA)n Simple_repeat Simple_repeat 2 85 0 1932 201 14 33 chr4 126365180 126365607 -57923055 - MSTA-int LTR MaLR -712 868 450 305 53 0 0 chr4 126365603 126365641 -57923021 + MST-int LTR MaLR 236 273 -1378 * 182 302 0 0 chr4 126366191 126366244 -57922418 - L2 LINE L2 -5 3308 3256 282 56 0 0 chr4 126366318 126366354 -57922308 + (TG)n Simple_repeat Simple_repeat 2 37 0 469 148 49 0 chr4 126366585 126366666 -57921996 + MLT1C LTR MaLR 1 85 -382 1038 200 0 0 chr4 126366667 126366847 -57921815 + MLT1C LTR MaLR 198 377 -90 440 276 8 16 chr4 126368108 126368231 -57920431 - MER94 DNA DNA -12 122 1 252 237 34 0 chr4 126368556 126368615 -57920047 - MARNA DNA Mariner -368 218 158 180 169 46 62 chr4 126368989 126369054 -57919608 - L2 LINE L2 -90 3223 3160 24 0 0 0 chr4 126370411 126370435 -57918227 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr4 126370575 126370600 -57918062 + AT_rich Low_complexity Low_complexity 1 25 0 622 209 0 0 chr4 126370725 126370840 -57917822 - LTR40a LTR ERVL -2 517 403 3662 286 52 30 chr4 126370840 126372156 -57916506 - HERVL40 LTR ERVL -1999 3531 2187 1162 288 60 38 chr4 126372176 126372724 -57915938 - HERVL40 LTR ERVL -4961 569 10 1198 272 121 17 chr4 126372733 126373145 -57915517 - LTR40b LTR ERVL -5 457 3 207 299 89 57 chr4 126373553 126373710 -57914952 + L2 LINE L2 3136 3297 -16 21 0 0 0 chr4 126373777 126373798 -57914864 + AT_rich Low_complexity Low_complexity 1 21 0 25 75 0 0 chr4 126373890 126373943 -57914719 + AT_rich Low_complexity Low_complexity 1 53 0 1970 66 4 19 chr4 126374460 126374717 -57913945 - AluY SINE Alu -30 281 29 235 308 161 50 chr4 126374718 126374978 -57913684 - L2 LINE L2 -96 3217 2929 452 297 86 30 chr4 126375350 126375582 -57913080 + MER110 LTR ERV1 166 410 -81 343 341 89 41 chr4 126375781 126376074 -57912588 - L2 LINE L2 -568 2746 2440 23 0 0 0 chr4 126376721 126376744 -57911918 + AT_rich Low_complexity Low_complexity 1 23 0 2615 236 9 12 chr4 126377029 126377687 -57910975 + L1P LINE L1 4510 5165 -981 224 330 52 52 chr4 126377964 126378023 -57910639 + MIR SINE MIR 28 86 -176 1867 177 135 3 chr4 126378023 126378401 -57910261 + MSTA LTR MaLR 1 428 0 224 330 52 52 chr4 126378401 126378532 -57910130 + MIR SINE MIR 85 218 -44 241 338 67 13 chr4 126379357 126379582 -57909080 - L2 LINE L2 -2 3311 3075 335 227 165 65 chr4 126379660 126379674 -57908988 + L1ME4a LINE L1 5592 5603 -518 2179 71 0 0 chr4 126379674 126379954 -57908708 + L1PA5 LINE L1 5875 6154 0 335 227 165 65 chr4 126379954 126380183 -57908479 + L1ME4a LINE L1 5603 5856 -265 237 314 0 95 chr4 126380223 126380360 -57908302 - L2 LINE L2 -291 2981 2858 2043 159 46 38 chr4 126380532 126381079 -57907583 + MLT2A2 LTR ERVL 1 553 -1 38922 111 17 14 chr4 126381081 126381402 -57907260 + HERVL-A2 LTR ERVL 2 320 -5334 3015 179 39 49 chr4 126381402 126382100 -57906562 - LTR8 LTR ERV1 0 691 1 38922 111 17 14 chr4 126382100 126382923 -57905739 + HERVL-A2 LTR ERVL 320 1139 -4515 2204 94 7 0 chr4 126382923 126383210 -57905452 + AluSp SINE Alu 1 289 -24 38922 111 17 14 chr4 126383210 126387698 -57900964 + HERVL-A2 LTR ERVL 1139 5654 0 1566 259 102 16 chr4 126387698 126388208 -57900454 + MLT2B3 LTR ERVL 1 554 0 228 314 50 41 chr4 126388209 126388330 -57900332 - L2 LINE L2 -666 2648 2527 195 271 21 21 chr4 126391047 126391095 -57897567 + L2 LINE L2 3225 3272 0 198 0 0 0 chr4 126391194 126391216 -57897446 + (TA)n Simple_repeat Simple_repeat 2 23 0 22 0 0 0 chr4 126392155 126392177 -57896485 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 126392635 126392663 -57895999 + AT_rich Low_complexity Low_complexity 1 28 0 927 184 43 5 chr4 126392891 126393076 -57895586 - L1PA15 LINE L1 0 6165 5974 2063 117 7 0 chr4 126393918 126394209 -57894453 - AluSx SINE Alu -19 293 1 2194 67 39 7 chr4 126394392 126394674 -57893988 + AluY SINE Alu 1 291 -20 21 82 0 0 chr4 126395119 126395168 -57893494 + AT_rich Low_complexity Low_complexity 1 49 0 25 75 0 0 chr4 126395222 126395275 -57893387 + AT_rich Low_complexity Low_complexity 1 53 0 329 355 82 26 chr4 126395553 126395784 -57892878 - MIR SINE MIR 0 262 19 30 0 0 0 chr4 126396422 126396452 -57892210 + AT_rich Low_complexity Low_complexity 1 30 0 296 351 147 27 chr4 126396658 126397065 -57891597 - L2 LINE L2 -9 3304 2849 244 354 105 56 chr4 126397118 126397491 -57891171 - L2 LINE L2 -463 2851 2461 1818 80 36 43 chr4 126397502 126397778 -57890884 + AluY SINE Alu 22 295 -16 26 0 0 0 chr4 126397778 126397804 -57890858 + AT_rich Low_complexity Low_complexity 1 26 0 1882 88 15 4 chr4 126398831 126399103 -57889559 + L1MA3 LINE L1 6030 6304 -1 22 80 0 0 chr4 126400150 126400200 -57888462 + AT_rich Low_complexity Low_complexity 1 50 0 22 56 0 0 chr4 126400213 126400249 -57888413 + AT_rich Low_complexity Low_complexity 1 36 0 28 0 0 0 chr4 126400519 126400547 -57888115 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr4 126401569 126401606 -57887056 + AT_rich Low_complexity Low_complexity 1 37 0 614 239 31 28 chr4 126402158 126402375 -57886287 + MER61D LTR ERV1 338 487 -14 21 57 0 0 chr4 126402412 126402447 -57886215 + AT_rich Low_complexity Low_complexity 1 35 0 2118 131 0 25 chr4 126402727 126403041 -57885621 + AluSx SINE Alu 1 306 -6 203 280 122 37 chr4 126403639 126403746 -57884916 + L2 LINE L2 3190 3305 -8 693 236 83 51 chr4 126403817 126404131 -57884531 - HsTC2 DNA Tc2 -17 1881 1558 417 225 43 91 chr4 126404135 126404322 -57884340 - HsTC2 DNA Tc2 -538 1360 1183 9879 221 36 4 chr4 126404341 126404640 -57884022 - L1PB2 LINE L1 -20 6131 5843 269 89 22 0 chr4 126404640 126404685 -57883977 + (TA)n Simple_repeat Simple_repeat 1 46 0 9879 221 36 4 chr4 126404685 126407447 -57881215 - L1PB2 LINE L1 -308 5843 2966 12075 44 1 0 chr4 126408187 126410445 -57878217 + L1PA5 LINE L1 3890 6149 -5 292 333 0 9 chr4 126411064 126411172 -57877490 + CT-rich Low_complexity Low_complexity 4 110 0 1875 164 61 37 chr4 126411739 126412304 -57876358 - L1MA3 LINE L1 0 6305 5519 1792 166 42 16 chr4 126412305 126412827 -57875835 + L1MA3 LINE L1 4980 5514 -749 2372 73 0 22 chr4 126413035 126413352 -57875310 - AluY SINE Alu -1 310 1 21 57 0 0 chr4 126413707 126413742 -57874920 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr4 126413908 126413936 -57874726 + AT_rich Low_complexity Low_complexity 1 28 0 243 0 0 0 chr4 126414265 126414292 -57874370 + (TG)n Simple_repeat Simple_repeat 2 28 0 346 130 0 0 chr4 126414333 126414379 -57874283 - AluSp SINE Alu -128 175 130 192 384 27 0 chr4 126414414 126414487 -57874175 - L2 LINE L2 -29 3243 3169 180 125 0 0 chr4 126415699 126415731 -57872931 + (TCTCTG)n Simple_repeat Simple_repeat 2 33 0 297 0 0 0 chr4 126416293 126416326 -57872336 + (CA)n Simple_repeat Simple_repeat 2 34 0 2028 166 31 0 chr4 126416503 126416852 -57871810 + THE1B LTR MaLR 3 362 -2 5632 127 46 109 chr4 126416856 126418082 -57870580 + THE1-int LTR MaLR 2 1097 -483 1000 267 101 88 chr4 126418256 126419627 -57869035 + L1ME1 LINE L1 2627 4016 -2130 213 65 0 0 chr4 126419719 126419750 -57868912 + (TG)n Simple_repeat Simple_repeat 2 32 0 666 242 0 31 chr4 126419773 126419934 -57868728 - Tigger1 DNA MER2_type 0 2418 2263 * 9442 166 33 8 chr4 126419931 126421587 -57867075 - Tigger1 DNA MER2_type -721 1697 2 1773 221 103 28 chr4 126421587 126422023 -57866639 - MLT2B1 LTR ERVL -49 471 1 1960 260 63 41 chr4 126422074 126423089 -57865573 + L1ME1 LINE L1 5127 6166 0 24 53 0 0 chr4 126423234 126423272 -57865390 + AT_rich Low_complexity Low_complexity 1 38 0 21 57 0 0 chr4 126423539 126423574 -57865088 + AT_rich Low_complexity Low_complexity 1 35 0 2434 108 65 19 chr4 126423820 126424248 -57864414 + LTR7 LTR ERV1 1 448 -2 1471 94 9 0 chr4 126424250 126424473 -57864189 + HERVH LTR ERV1 1 225 -7488 * 16138 97 33 13 chr4 126424441 126427029 -57861633 + HERVH LTR ERV1 486 3290 -4423 3366 99 4 4 chr4 126427028 126427522 -57861140 + HERVH LTR ERV1 3500 3993 -3720 * 2858 130 2 24 chr4 126427524 126428155 -57860507 + HERVH LTR ERV1 4488 5149 -2564 1245 119 25 0 chr4 126428162 126428363 -57860299 + HERVH LTR ERV1 5612 5817 -1896 2539 68 45 24 chr4 126428365 126428747 -57859915 + HERVH LTR ERV1 7324 7713 0 2450 107 60 21 chr4 126428747 126429178 -57859484 + LTR7 LTR ERV1 1 448 -2 269 377 86 35 chr4 126429322 126429982 -57858680 - L2 LINE L2 -337 2977 2284 343 285 70 82 chr4 126430270 126430540 -57858122 - HAL1 LINE L1 -1497 1010 744 263 352 0 0 chr4 126431382 126431453 -57857209 + L2 LINE L2 3201 3271 -1 29 28 0 0 chr4 126433545 126433581 -57855081 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chr4 126433894 126433932 -57854730 + AT_rich Low_complexity Low_complexity 1 38 0 521 289 31 23 chr4 126434013 126434206 -57854456 - MIR SINE MIR -56 206 10 348 24 0 0 chr4 126434334 126434375 -57854287 + (TG)n Simple_repeat Simple_repeat 2 42 0 26 30 0 0 chr4 126434419 126434452 -57854210 + AT_rich Low_complexity Low_complexity 1 33 0 22 56 0 0 chr4 126434577 126434613 -57854049 + AT_rich Low_complexity Low_complexity 1 36 0 2303 80 0 0 chr4 126434729 126435028 -57853634 + AluY SINE Alu 1 299 -12 22 0 0 0 chr4 126435076 126435098 -57853564 + AT_rich Low_complexity Low_complexity 1 22 0 181 271 17 17 chr4 126435581 126435640 -57853022 + MIR SINE MIR 94 152 -110 297 356 46 38 chr4 126437424 126437663 -57850999 + MLT1J LTR MaLR 5 245 -266 404 333 63 10 chr4 126437827 126438034 -57850628 + MLT1J LTR MaLR 294 511 0 2418 80 0 0 chr4 126438131 126438432 -57850230 - AluY SINE Alu -10 301 1 1947 141 41 24 chr4 126438719 126439088 -57849574 - THE1C LTR MaLR 0 375 1 3581 98 2 15 chr4 126439225 126439743 -57848919 - MER9 LTR ERVK 0 511 1 2040 97 11 4 chr4 126439745 126440023 -57848639 - HERVK9 LTR ERVK -2 5914 5635 6513 90 5 1 chr4 126440119 126440993 -57847669 - HERVK9 LTR ERVK -282 5634 4758 3032 49 5 0 chr4 126440991 126441358 -57847304 - HERVK9 LTR ERVK -1837 4079 3711 * 1061 46 15 0 chr4 126441358 126441489 -57847173 - HERVK9 LTR ERVK -3130 2786 2654 * 8232 72 1 1 chr4 126441488 126442534 -57846128 - HERVK9 LTR ERVK -3447 2469 1424 3967 93 5 24 chr4 126442532 126443111 -57845551 - HERVK9 LTR ERVK -5348 568 1 * 3560 94 26 4 chr4 126443111 126443611 -57845051 - MER9 LTR ERVK 0 511 1 246 250 33 0 chr4 126444620 126444680 -57843982 - L2 LINE L2 -73 3240 3179 473 366 17 17 chr4 126446223 126446455 -57842207 + L2 LINE L2 727 958 -2356 1739 291 60 19 chr4 126446505 126447520 -57841142 + L1ME3A LINE L1 4987 6141 -29 276 326 22 11 chr4 126447563 126447655 -57841007 + L2 LINE L2 1190 1282 -2032 2395 72 0 0 chr4 126447674 126447967 -57840695 - AluY SINE Alu -9 302 10 685 247 23 46 chr4 126448681 126448944 -57839718 + L1MD3 LINE L1 7730 7986 -9 28 29 0 0 chr4 126449644 126449679 -57838983 + AT_rich Low_complexity Low_complexity 1 35 0 2286 107 0 0 chr4 126451211 126451520 -57837142 + AluSc SINE Alu 1 309 0 392 267 146 50 chr4 126451807 126452047 -57836615 - L1ME LINE L1 -5070 1000 738 1528 118 173 46 chr4 126452365 126452514 -57836148 - THE1B LTR MaLR 0 364 235 2475 76 0 0 chr4 126452514 126452816 -57835846 - AluSq SINE Alu -11 302 1 1528 118 173 46 chr4 126452816 126452989 -57835673 - THE1B LTR MaLR -129 235 1 206 327 96 10 chr4 126453570 126453674 -57834988 - MIR SINE MIR -66 196 84 14066 160 30 15 chr4 126454466 126460663 -57827999 + L1MA3 LINE L1 1434 7724 0 9293 232 44 26 chr4 126460686 126461686 -57826976 + L1MC3 LINE L1 4316 5296 -2489 2161 126 0 0 chr4 126461686 126461987 -57826675 + AluSx SINE Alu 1 301 -11 9293 232 44 26 chr4 126461987 126463794 -57824868 + L1MC3 LINE L1 5296 7068 -717 2276 73 0 13 chr4 126463794 126464094 -57824568 + AluY SINE Alu 1 296 -15 9293 232 44 26 chr4 126464094 126464481 -57824181 + L1MC3 LINE L1 7068 7594 -191 2221 111 23 11 chr4 126464481 126464832 -57823830 + THE1A LTR MaLR 1 355 0 9293 232 44 26 chr4 126464832 126465008 -57823654 + L1MC3 LINE L1 7594 7765 -20 248 208 19 38 chr4 126465020 126465126 -57823536 + (TA)n Simple_repeat Simple_repeat 1 104 0 1867 131 4 7 chr4 126467064 126467338 -57821324 + AluSq SINE Alu 2 274 -39 1954 143 41 41 chr4 126467649 126468012 -57820650 - THE1B LTR MaLR 0 364 2 297 0 0 0 chr4 126468256 126468289 -57820373 + (A)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr4 126468512 126468533 -57820129 + AT_rich Low_complexity Low_complexity 1 21 0 506 159 0 0 chr4 126468833 126468921 -57819741 - L1PB3 LINE L1 -7 6147 6060 212 290 191 55 chr4 126469624 126469807 -57818855 - MIR SINE MIR -25 237 30 1792 174 15 0 chr4 126470377 126470704 -57817958 - L1MC1 LINE L1 0 6333 6002 200 353 17 25 chr4 126471326 126471445 -57817217 + MER5A DNA MER1_type 54 171 -18 253 301 11 65 chr4 126471652 126471745 -57816917 - L2 LINE L2 -213 3059 2972 23 33 0 0 chr4 126473489 126473519 -57815143 + AT_rich Low_complexity Low_complexity 1 30 0 26 74 0 0 chr4 126475016 126475070 -57813592 + AT_rich Low_complexity Low_complexity 1 54 0 507 304 145 45 chr4 126475566 126476118 -57812544 + L2 LINE L2 1978 2584 -730 295 235 49 111 chr4 126476181 126476343 -57812319 + LTR16A LTR ERVL 70 221 -229 256 83 0 0 chr4 126478450 126478486 -57810176 + tRNA-Gln-CAG tRNA tRNA 1 36 -39 1443 98 15 0 chr4 126479171 126479375 -57809287 - Tigger1 DNA MER2_type -674 1744 1538 1584 209 38 0 chr4 126479376 126479692 -57808970 - Tigger1 DNA MER2_type -2089 329 2 330 318 164 33 chr4 126479743 126480042 -57808620 - L3 LINE CR1 -199 1378 1041 21 71 0 0 chr4 126480612 126480654 -57808008 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr4 126480814 126480844 -57807818 + AT_rich Low_complexity Low_complexity 1 30 0 24 67 0 0 chr4 126481123 126481168 -57807494 + AT_rich Low_complexity Low_complexity 1 45 0 26 50 0 0 chr4 126483468 126483508 -57805154 + AT_rich Low_complexity Low_complexity 1 40 0 512 253 55 39 chr4 126484277 126484459 -57804203 - MIR SINE MIR -6 256 72 470 248 32 6 chr4 126485197 126485447 -57803215 - Charlie4 DNA MER1_type -56 1905 159 229 167 0 45 chr4 126486880 126486946 -57801716 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 181 208 83 0 chr4 126487103 126487151 -57801511 - L2 LINE L2 -5 3308 3257 2769 256 63 2 chr4 126487158 126487947 -57800715 - L1ME1 LINE L1 -4 6162 5326 367 324 109 25 chr4 126487947 126488222 -57800440 - L2 LINE L2 -45 3268 2971 892 346 140 23 chr4 126489816 126490650 -57798012 - L2 LINE L2 -260 3012 2070 2013 113 25 0 chr4 126492762 126493046 -57795616 - AluSx SINE Alu -21 291 1 28 0 0 0 chr4 126493052 126493080 -57795582 + AT_rich Low_complexity Low_complexity 1 28 0 1444 303 36 52 chr4 126493892 126494444 -57794218 - MER115 DNA AcHobo -63 630 88 28 0 0 0 chr4 126496716 126496744 -57791918 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 126497095 126497123 -57791539 + AT_rich Low_complexity Low_complexity 1 28 0 252 0 0 0 chr4 126497274 126497302 -57791360 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 260 344 32 13 chr4 126498377 126498534 -57790128 + Charlie8 DNA MER1_type 85 244 -2173 206 286 32 0 chr4 126498740 126498803 -57789859 + L2 LINE L2 3246 3310 -3 1698 140 0 0 chr4 126499185 126499435 -57789227 - AluSx SINE Alu -14 298 49 529 206 40 0 chr4 126499573 126499699 -57788963 + L1MD2 LINE L1 6219 6349 -10 293 344 178 17 chr4 126500090 126500320 -57788342 + L2 LINE L2 95 361 -2953 25 51 0 0 chr4 126500887 126500926 -57787736 + AT_rich Low_complexity Low_complexity 1 39 0 1745 183 118 5 chr4 126501388 126501756 -57786906 - Tigger1 DNA MER2_type -1 2417 2007 1988 136 40 34 chr4 126501756 126502108 -57786554 + THE1B LTR MaLR 1 354 -10 754 184 83 12 chr4 126502110 126502278 -57786384 - Tigger1 DNA MER2_type -406 2012 1833 308 267 38 19 chr4 126502508 126502613 -57786049 - L1ME LINE L1 -404 5717 5611 484 241 62 12 chr4 126502848 126503010 -57785652 + LTR65 LTR ERV1 1 170 -499 495 288 77 84 chr4 126503607 126503930 -57784732 + L2 LINE L2 2289 2609 -705 26 30 0 0 chr4 126503985 126504018 -57784644 + AT_rich Low_complexity Low_complexity 1 33 0 215 278 206 0 chr4 126504067 126504164 -57784498 - L2 LINE L2 -20 3252 3136 25 0 0 0 chr4 126504220 126504245 -57784417 + AT_rich Low_complexity Low_complexity 1 25 0 1831 234 16 14 chr4 126504268 126504699 -57783963 + MER69 DNA AcHobo 33 464 -762 659 278 107 3 chr4 126504696 126505023 -57783639 + MER69 DNA AcHobo 2002 2362 -164 * 5140 176 27 16 chr4 126505780 126506805 -57781857 + L1MA7 LINE L1 5255 6291 0 212 133 44 0 chr4 126508445 126508490 -57780172 + (TA)n Simple_repeat Simple_repeat 2 48 0 1844 148 67 22 chr4 126508883 126509242 -57779420 - THE1C LTR MaLR 0 375 1 3545 231 35 24 chr4 126509672 126511296 -57777366 - L1MC/D LINE L1 -477 5765 4124 2119 224 23 0 chr4 126511309 126511737 -57776925 + MLT2B1 LTR ERVL 9 446 -74 342 0 0 0 chr4 126511737 126511775 -57776887 + (CA)n Simple_repeat Simple_repeat 2 39 0 28 0 0 0 chr4 126511826 126511854 -57776808 + AT_rich Low_complexity Low_complexity 1 28 0 514 284 82 18 chr4 126511854 126512130 -57776532 - L1M4 LINE L1 -2240 3906 3623 323 227 151 49 chr4 126512206 126512391 -57776271 - MER5C DNA MER1_type 0 324 121 * 404 329 53 6 chr4 126512380 126512550 -57776112 + L2 LINE L2 2559 2736 -578 1308 85 0 0 chr4 126512571 126512736 -57775926 + AluY SINE Alu 1 165 -146 766 315 55 27 chr4 126512746 126513274 -57775388 + L2 LINE L2 2764 3313 0 1903 129 28 0 chr4 126513357 126513643 -57775019 - AluSg SINE Alu -14 296 3 315 263 10 0 chr4 126513783 126513882 -57774780 + GA-rich Low_complexity Low_complexity 3 102 0 242 179 18 0 chr4 126514285 126514341 -57774321 + GA-rich Low_complexity Low_complexity 1 57 0 350 89 0 18 chr4 126514342 126514398 -57774264 + (GGGGA)n Simple_repeat Simple_repeat 5 59 0 381 225 291 6 chr4 126514621 126514803 -57773859 - MIR SINE MIR -28 234 1 912 290 99 52 chr4 126516573 126517248 -57771414 + MER20B DNA MER1_type 77 783 0 1531 34 0 0 chr4 126517378 126517556 -57771106 - AluY SINE Alu 0 311 134 22 56 0 0 chr4 126518892 126518928 -57769734 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr4 126518958 126518987 -57769675 + AT_rich Low_complexity Low_complexity 1 29 0 1099 292 85 41 chr4 126518993 126519209 -57769453 + L1MEc LINE L1 484 689 -5424 2070 119 7 3 chr4 126519209 126519519 -57769143 + AluSp SINE Alu 3 313 0 1099 292 85 41 chr4 126519519 126520219 -57768443 + L1MEc LINE L1 689 1281 -4832 1187 299 31 3 chr4 126520241 126520640 -57768022 + L1ME2 LINE L1 5473 5872 -292 398 249 86 67 chr4 126520644 126520853 -57767809 + L1MA10 LINE L1 6115 6327 -7 2716 231 35 17 chr4 126520868 126521581 -57767081 + L1ME1 LINE L1 5436 6161 -5 26 0 0 0 chr4 126523232 126523258 -57765404 + AT_rich Low_complexity Low_complexity 1 26 0 189 0 0 0 chr4 126523317 126523338 -57765324 + (TC)n Simple_repeat Simple_repeat 2 22 0 252 0 0 0 chr4 126523339 126523367 -57765295 + (TG)n Simple_repeat Simple_repeat 2 29 0 1192 67 0 0 chr4 126523692 126523841 -57764821 - AluY SINE Alu -8 303 155 533 267 58 74 chr4 126524759 126525187 -57763475 - MLT1G LTR MaLR -5 537 88 263 394 115 6 chr4 126525543 126525708 -57762954 - MIR SINE MIR -51 211 29 652 275 67 19 chr4 126525744 126526013 -57762649 - MER113 DNA MER1_type? -43 478 197 1782 114 43 0 chr4 126526042 126526297 -57762365 - AluSg SINE Alu -11 299 34 23 33 0 0 chr4 126528394 126528424 -57760238 + AT_rich Low_complexity Low_complexity 1 30 0 459 286 117 29 chr4 126528885 126529227 -57759435 - MER113 DNA MER1_type? -120 401 30 1949 114 4 0 chr4 126529455 126529726 -57758936 - AluSp SINE Alu -5 308 37 3136 143 65 16 chr4 126531076 126531657 -57757005 + MER4B LTR ERV1 1 610 0 2325 164 5 0 chr4 126532209 126532599 -57756063 + MER41E LTR ERV1 113 504 -8 5708 56 42 13 chr4 126533060 126533816 -57754846 + LTR17 LTR ERV1 3 780 0 2531 53 0 3 chr4 126535292 126535596 -57753066 - AluY SINE Alu -8 303 1 1180 220 75 23 chr4 126536586 126536931 -57751731 + MLT1A1 LTR MaLR 1 363 -2 22 35 0 0 chr4 126537411 126537440 -57751222 + AT_rich Low_complexity Low_complexity 1 29 0 201 121 0 0 chr4 126537843 126537876 -57750786 + (CA)n Simple_repeat Simple_repeat 2 34 0 203 59 0 29 chr4 126539819 126539853 -57748809 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 221 333 105 31 chr4 126541203 126541365 -57747297 + MIR3 SINE MIR 18 191 -17 362 328 64 26 chr4 126541559 126542103 -57746559 - L1ME3A LINE L1 -296 5874 5310 28 0 0 0 chr4 126542231 126542259 -57746403 + AT_rich Low_complexity Low_complexity 1 28 0 29291 57 4 1 chr4 126542259 126546015 -57742647 - L1P LINE L1 -1738 4408 640 674 275 108 58 chr4 126547768 126548251 -57740411 - MLT1J LTR MaLR -4 507 1 25 31 0 0 chr4 126549563 126549595 -57739067 + AT_rich Low_complexity Low_complexity 1 32 0 206 286 45 68 chr4 126549653 126549786 -57738876 + MIR SINE MIR 77 206 -56 206 263 12 12 chr4 126549845 126549925 -57738737 + (TTA)n Simple_repeat Simple_repeat 1 80 0 1506 154 42 84 chr4 126550710 126550822 -57737840 + L1 LINE L1 4075 4190 -1956 1645 164 34 0 chr4 126550822 126551090 -57737572 + AluJb SINE Alu 3 279 -33 491 102 11 0 chr4 126551090 126551178 -57737484 + (CA)n Simple_repeat Simple_repeat 1 89 0 1506 154 42 84 chr4 126551178 126551447 -57737215 + L1 LINE L1 4188 4441 -1705 282 235 15 0 chr4 126551863 126551931 -57736731 + (TATG)n Simple_repeat Simple_repeat 4 72 0 190 73 49 0 chr4 126552253 126552294 -57736368 + (TG)n Simple_repeat Simple_repeat 2 44 0 10412 206 8 13 chr4 126554212 126557652 -57731010 - L1MA3 LINE L1 0 7724 4329 1072 116 17 12 chr4 126557707 126557880 -57730782 - LTR56 LTR ERV1 -270 175 2 2536 201 36 20 chr4 126557908 126558879 -57729783 - L1MA3 LINE L1 -3264 4301 3314 8875 189 32 41 chr4 126558879 126561395 -57727267 - L1MA3 LINE L1 -4683 2882 14 188 130 22 0 chr4 126563149 126563195 -57725467 + (TA)n Simple_repeat Simple_repeat 2 48 0 29 47 0 0 chr4 126563935 126563978 -57724684 + AT_rich Low_complexity Low_complexity 1 43 0 438 333 32 28 chr4 126563980 126564196 -57724466 - MIR SINE MIR -43 219 3 21 0 0 0 chr4 126564978 126564999 -57723663 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr4 126565197 126565228 -57723434 + AT_rich Low_complexity Low_complexity 1 31 0 445 280 77 25 chr4 126565433 126565636 -57723026 - L1ME2 LINE L1 -6 6160 5950 753 292 65 14 chr4 126565650 126566003 -57722659 - L1ME2 LINE L1 -1144 5002 4632 682 185 60 7 chr4 126566019 126566170 -57722492 + L1MB3 LINE L1 6014 6172 -11 2029 164 7 36 chr4 126566187 126566601 -57722061 + L1MB7 LINE L1 5754 6155 -29 972 242 118 48 chr4 126566705 126567332 -57721330 - L1ME2 LINE L1 -1671 4475 3805 2018 214 3 3 chr4 126568566 126568930 -57719732 + L1PB4 LINE L1 659 1022 -5827 12475 218 35 17 chr4 126568930 126573492 -57715170 + L1PA15-16 LINE L1 688 5367 -1482 8881 206 21 54 chr4 126573502 126574087 -57714575 + L1PB4 LINE L1 3622 4225 -2624 198 0 0 0 chr4 126574087 126574109 -57714553 + (CA)n Simple_repeat Simple_repeat 2 23 0 8881 206 21 54 chr4 126574109 126574355 -57714307 + L1PB4 LINE L1 4225 4478 -2371 1661 152 8 0 chr4 126574355 126574611 -57714051 + AluJo SINE Alu 1 258 -54 8881 206 21 54 chr4 126574611 126576249 -57712413 + L1PB4 LINE L1 4478 6011 -838 6015 99 6 33 chr4 126576269 126576352 -57712310 + L1PA10 LINE L1 5254 5338 -830 1904 117 0 34 chr4 126576352 126576690 -57711972 + AluSc SINE Alu 1 328 0 6015 99 6 33 chr4 126576690 126577543 -57711119 + L1PA10 LINE L1 5338 6166 -2 3949 147 14 24 chr4 126577537 126577909 -57710753 + L1PB4 LINE L1 6020 6382 -477 * 2068 100 45 0 chr4 126577909 126578199 -57710463 + AluSx SINE Alu 1 303 -9 3949 147 14 24 chr4 126578199 126578569 -57710093 + L1PB4 LINE L1 6382 6754 -105 35 71 0 0 chr4 126579776 126579846 -57708816 + AT_rich Low_complexity Low_complexity 1 70 0 3238 193 25 16 chr4 126580140 126580872 -57707790 - L1MB2 LINE L1 0 7233 6496 332 316 102 23 chr4 126580891 126581068 -57707594 - L1MC/D LINE L1 -2016 5792 5602 26 64 0 0 chr4 126581079 126581126 -57707536 + AT_rich Low_complexity Low_complexity 1 47 0 26 50 0 0 chr4 126581581 126581621 -57707041 + AT_rich Low_complexity Low_complexity 1 40 0 8026 228 40 24 chr4 126581622 126585327 -57703335 - L1MB2 LINE L1 -2295 4913 1151 390 290 92 34 chr4 126585385 126585592 -57703070 - L1MB2 LINE L1 -5838 1371 1153 29 28 0 0 chr4 126586859 126586895 -57701767 + AT_rich Low_complexity Low_complexity 1 36 0 2729 208 34 5 chr4 126587090 126587706 -57700956 - L1 LINE L1 -1063 5083 4450 1550 167 52 52 chr4 126587707 126588037 -57700625 + MER2 DNA MER2_type 2 331 -14 798 158 37 85 chr4 126588049 126588295 -57700367 - L1 LINE L1 -1693 4453 4220 * 3507 155 47 9 chr4 126588294 126588522 -57700140 + L1MA7 LINE L1 5285 5503 -788 1836 190 80 10 chr4 126588522 126588922 -57699740 + MSTA LTR MaLR 1 428 0 3507 155 47 9 chr4 126588922 126589494 -57699168 + L1MA7 LINE L1 5503 6289 -2 26 0 0 0 chr4 126589508 126589534 -57699128 + AT_rich Low_complexity Low_complexity 1 26 0 22 70 0 0 chr4 126589592 126589635 -57699027 + AT_rich Low_complexity Low_complexity 1 43 0 7028 99 9 11 chr4 126590108 126591160 -57697502 - L1MA2 LINE L1 0 6304 5254 25 0 0 0 chr4 126591274 126591299 -57697363 + AT_rich Low_complexity Low_complexity 1 25 0 297 0 0 0 chr4 126592419 126592452 -57696210 + (CA)n Simple_repeat Simple_repeat 2 34 0 301 240 0 0 chr4 126592642 126592692 -57695970 + MER66B LTR ERV1 295 344 -142 1171 182 50 95 chr4 126592883 126593240 -57695422 + MLT2C1 LTR ERVL 57 397 0 4153 213 46 14 chr4 126593318 126595134 -57693528 + L1MB7 LINE L1 4276 6169 -15 2046 142 49 56 chr4 126595165 126595594 -57693068 - MSTA LTR MaLR -2 426 1 22 35 0 0 chr4 126595664 126595693 -57692969 + AT_rich Low_complexity Low_complexity 1 29 0 638 202 50 0 chr4 126595861 126595980 -57692682 - MER74A LTR ERVL 0 558 434 1459 259 34 18 chr4 126596097 126596479 -57692183 - MER74A LTR ERVL -136 422 35 288 0 0 0 chr4 126598360 126598392 -57690270 + (TC)n Simple_repeat Simple_repeat 2 33 0 * 333 0 0 0 chr4 126598391 126598428 -57690234 + (TG)n Simple_repeat Simple_repeat 2 38 0 2237 98 3 0 chr4 126598579 126598876 -57689786 + AluSx SINE Alu 1 298 -14 262 308 138 6 chr4 126599278 126599437 -57689225 - MIR SINE MIR -13 249 70 23 0 0 0 chr4 126600303 126600326 -57688336 + AT_rich Low_complexity Low_complexity 1 23 0 4639 159 27 18 chr4 126600453 126600754 -57687908 - L1MB1 LINE L1 -5 6163 5866 2281 92 7 0 chr4 126600754 126601048 -57687614 + AluSq SINE Alu 1 296 -17 4639 159 27 18 chr4 126601048 126601586 -57687076 - L1MB1 LINE L1 -302 5866 5316 617 144 0 19 chr4 126601590 126601694 -57686968 - FLAM_C SINE Alu -16 127 26 591 221 35 56 chr4 126601704 126601935 -57686727 - L1MB1 LINE L1 -825 5321 5096 390 308 101 13 chr4 126602945 126603172 -57685490 - L2 LINE L2 -1333 1981 1735 207 100 0 0 chr4 126603444 126603474 -57685188 + (A)n Simple_repeat Simple_repeat 1 30 0 370 260 31 0 chr4 126603497 126603593 -57685069 - MER5A DNA MER1_type -77 112 14 219 324 144 44 chr4 126603654 126604037 -57684625 - L2 LINE L2 -1897 1417 997 22 0 0 0 chr4 126605234 126605256 -57683406 + AT_rich Low_complexity Low_complexity 1 22 0 378 308 39 8 chr4 126605425 126605555 -57683107 + MIR SINE MIR 1 134 -128 503 255 90 32 chr4 126605592 126605780 -57682882 - MER67D LTR ERV1 -8 506 308 1084 205 60 85 chr4 126605828 126606145 -57682517 - MER67D LTR ERV1 -205 309 1 2123 106 3 0 chr4 126606592 126606908 -57681754 + AluSg SINE Alu 1 317 0 32 0 0 0 chr4 126608129 126608161 -57680501 + AT_rich Low_complexity Low_complexity 1 32 0 30 45 0 0 chr4 126609264 126609308 -57679354 + AT_rich Low_complexity Low_complexity 1 44 0 2390 155 19 14 chr4 126610177 126610603 -57678059 + MSTA LTR MaLR 1 428 0 277 184 0 0 chr4 126611884 126611933 -57676729 + MADE1 DNA Mariner 32 80 0 36 40 0 0 chr4 126613280 126613330 -57675332 + AT_rich Low_complexity Low_complexity 1 50 0 24 53 0 0 chr4 126613432 126613470 -57675192 + AT_rich Low_complexity Low_complexity 1 38 0 207 277 77 0 chr4 126614357 126614422 -57674240 - L2 LINE L2 0 3313 3244 400 259 34 68 chr4 126614463 126614610 -57674052 + MIR SINE MIR 59 200 -62 8684 138 41 5 chr4 126614665 126616048 -57672614 + Tigger4(Zombi) DNA MER2_type 1 1433 -1298 383 111 0 0 chr4 126616048 126616102 -57672560 - L1M2 LINE L1 -592 5720 5667 1280 176 36 131 chr4 126616115 126616684 -57671978 + L1ME LINE L1 5148 5669 -501 553 332 56 0 chr4 126616684 126616898 -57671764 - L2 LINE L2 -267 3046 2821 393 287 28 21 chr4 126617102 126617245 -57671417 + MER46C DNA MER2_type 186 329 -9 1606 147 110 0 chr4 126617248 126617521 -57671141 + AluSx SINE Alu 1 303 -9 21 57 0 0 chr4 126617707 126617742 -57670920 + AT_rich Low_complexity Low_complexity 1 35 0 1218 199 36 44 chr4 126618318 126618815 -57669847 + MLT2A2 LTR ERVL 1 548 -6 21 0 0 0 chr4 126619769 126619790 -57668872 + AT_rich Low_complexity Low_complexity 1 21 0 280 222 11 22 chr4 126621291 126621381 -57667281 - MER20B DNA MER1_type -6 777 689 586 338 39 31 chr4 126622381 126622739 -57665923 + L2 LINE L2 2953 3313 0 2952 171 14 12 chr4 126623804 126624396 -57664266 - L1MA4 LINE L1 -33 6267 5675 1086 135 5 0 chr4 126624499 126624754 -57663908 - L1MA4 LINE L1 -743 5403 5176 182 333 11 44 chr4 126624827 126624917 -57663745 + L2 LINE L2 2301 2387 -927 26 0 0 0 chr4 126625449 126625475 -57663187 + AT_rich Low_complexity Low_complexity 1 26 0 373 238 12 12 chr4 126625652 126625736 -57662926 - L2 LINE L2 -8 3305 3222 391 213 46 17 chr4 126625831 126626005 -57662657 + (TA)n Simple_repeat Simple_repeat 2 180 0 252 0 0 0 chr4 126626017 126626045 -57662617 + (CA)n Simple_repeat Simple_repeat 2 29 0 26 50 0 0 chr4 126627030 126627070 -57661592 + AT_rich Low_complexity Low_complexity 1 40 0 230 221 124 14 chr4 126627834 126627979 -57660683 + L1MDa LINE L1 1328 1488 -5052 730 212 45 56 chr4 126628125 126628323 -57660339 - MER20B DNA MER1_type -18 201 6 1244 309 32 19 chr4 126628342 126628773 -57659889 - MLT1E2 LTR MaLR -2 624 188 12828 104 8 1 chr4 126629693 126631573 -57657089 + L1PA8 LINE L1 3251 5147 -999 3922 63 8 10 chr4 126631573 126632092 -57656570 + L1PA8 LINE L1 5653 6171 -1 12828 104 8 1 chr4 126632092 126632112 -57656550 + L1PA8 LINE L1 5147 5165 -981 21 0 0 0 chr4 126632421 126632442 -57656220 + AT_rich Low_complexity Low_complexity 1 21 0 401 184 82 20 chr4 126633197 126633295 -57655367 + L1MB7 LINE L1 6037 6140 -44 2157 172 34 32 chr4 126633295 126633848 -57654814 - MLT2A2 LTR ERVL 0 554 1 24 32 0 0 chr4 126634490 126634521 -57654141 + AT_rich Low_complexity Low_complexity 1 31 0 454 289 62 34 chr4 126635239 126636164 -57652498 + L1ME LINE L1 1024 1862 -4566 3768 181 12 0 chr4 126636328 126637001 -57651661 + Tigger2 DNA MER2_type 2 682 -2036 1380 185 54 44 chr4 126637006 126637304 -57651358 + AluJo SINE Alu 1 301 -11 397 113 0 0 chr4 126637304 126637357 -57651305 + AluSq/x SINE Alu 100 152 -150 234 0 0 0 chr4 126637457 126637483 -57651179 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 252 204 93 0 chr4 126637485 126637539 -57651123 + Tigger2 DNA MER2_type 684 742 -1976 1306 180 57 0 chr4 126637607 126637851 -57650811 + Tigger2 DNA MER2_type 2461 2718 0 229 169 0 34 chr4 126637851 126637910 -57650752 + (TTATA)n Simple_repeat Simple_repeat 3 59 0 2176 126 7 0 chr4 126637963 126638264 -57650398 - AluSx SINE Alu -9 303 1 917 259 9 0 chr4 126638266 126638482 -57650180 + MER20 DNA MER1_type 2 219 0 418 279 41 68 chr4 126638497 126638734 -57649928 + L1ME LINE L1 2243 2526 -3951 518 203 133 52 chr4 126638937 126639138 -57649524 - LTR49-int LTR ERV1 -1841 4105 3922 1667 188 3 17 chr4 126639138 126639430 -57649232 + AluJb SINE Alu 1 288 -24 518 203 133 52 chr4 126639430 126639628 -57649034 - LTR49-int LTR ERV1 -2024 3922 3699 27 81 0 0 chr4 126639669 126639731 -57648931 + AT_rich Low_complexity Low_complexity 1 62 0 1456 168 60 46 chr4 126639826 126639907 -57648755 - LTR49-int LTR ERV1 -3224 3107 3029 180 0 0 0 chr4 126639907 126639927 -57648735 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1456 168 60 46 chr4 126639927 126640196 -57648466 - LTR49-int LTR ERV1 -3302 3029 2752 1950 127 52 0 chr4 126640207 126640498 -57648164 - AluSx SINE Alu -6 306 1 276 149 0 0 chr4 126640730 126640777 -57647885 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 822 316 38 15 chr4 126641057 126641323 -57647339 - LTR49-int LTR ERV1 -4152 2179 1908 1617 124 0 9 chr4 126641389 126641615 -57647047 + AluSx SINE Alu 1 224 -88 225 0 0 0 chr4 126641635 126641660 -57647002 + (A)n Simple_repeat Simple_repeat 1 25 0 3639 182 54 1 chr4 126641687 126642336 -57646326 - MER72 LTR ERV1 -35 687 5 334 279 35 0 chr4 126642345 126642431 -57646231 - LTR49-int LTR ERV1 -4554 382 294 1815 110 0 0 chr4 126643212 126643449 -57645213 + AluSp SINE Alu 50 286 -27 299 205 36 12 chr4 126643625 126643708 -57644954 - LTR49-int LTR ERV1 -4954 1377 1293 2393 186 54 98 chr4 126643781 126644507 -57644155 + LTR8A LTR ERV1 34 727 0 473 239 22 25 chr4 126644741 126644960 -57643702 - LTR49-int LTR ERV1 -5410 921 732 1129 119 12 0 chr4 126645035 126645203 -57643459 - MER50 LTR ERV1 0 734 565 1220 116 68 24 chr4 126645206 126645413 -57643249 + AluSg/x SINE Alu 93 308 -2 2871 177 16 14 chr4 126645413 126645973 -57642689 - MER50 LTR ERV1 -161 573 13 475 204 6 31 chr4 126645987 126646163 -57642499 - LTR49-int LTR ERV1 -5643 688 464 776 159 8 0 chr4 126646163 126646289 -57642373 + MLT2B1 LTR ERVL 340 466 -54 742 179 36 6 chr4 126646337 126646505 -57642157 - L1MA8 LINE L1 0 6291 6119 2472 214 146 37 chr4 126646508 126647246 -57641416 + LTR1B LTR ERV1 8 826 0 13526 179 27 31 chr4 126647355 126650089 -57638573 + HUERS-P2 LTR ERV1 75 6731 -355 1288 49 0 12 chr4 126650089 126650253 -57638409 + L1PA5 LINE L1 5980 6141 -13 341 299 86 29 chr4 126651473 126651717 -57636945 - MIR SINE MIR -1 261 4 1247 161 0 0 chr4 126652149 126652348 -57636314 - AluJb SINE Alu -113 199 1 440 369 82 56 chr4 126654458 126654870 -57633792 - L2 LINE L2 -17 3255 2833 1049 316 100 22 chr4 126655661 126656170 -57632492 - MLT2E LTR ERVL 0 628 80 1728 298 57 36 chr4 126656177 126658152 -57630510 - ERVL-E LTR ERVL -23 5741 3575 * 4016 126 186 108 chr4 126658137 126659593 -57629069 + pTR5 LTR ERV1 743 2438 0 883 296 24 24 chr4 126659709 126660000 -57628662 - ERVL-E LTR ERVL -2292 3472 3182 424 224 31 34 chr4 126660035 126660229 -57628433 + L1M3de LINE L1 1266 1777 -4526 798 282 67 41 chr4 126660392 126660736 -57627926 - LTR16A1 LTR ERVL -103 354 2 2548 139 28 21 chr4 126660845 126661268 -57627394 + MSTB LTR MaLR 1 426 0 1524 199 135 0 chr4 126661655 126661952 -57626710 - MER1B DNA MER1_type 0 337 1 1453 118 36 9 chr4 126661971 126662192 -57626470 + MER30 DNA MER1_type 4 230 0 30886 48 3 2 chr4 126662844 126667490 -57621172 + L1PA5 LINE L1 1504 6153 -1 489 325 39 45 chr4 126668435 126668770 -57619892 + L1M4 LINE L1 4349 4681 -1465 2489 24 3 0 chr4 126668771 126669067 -57619595 - L1PA4 LINE L1 0 6155 5859 27 29 0 0 chr4 126669669 126669703 -57618959 + AT_rich Low_complexity Low_complexity 1 34 0 51 31 0 0 chr4 126671307 126671372 -57617290 + AT_rich Low_complexity Low_complexity 1 65 0 21 0 0 0 chr4 126672084 126672105 -57616557 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 126672479 126672503 -57616159 + AT_rich Low_complexity Low_complexity 1 24 0 326 321 9 18 chr4 126672658 126672770 -57615892 + L2 LINE L2 3199 3309 -4 6098 151 28 12 chr4 126672915 126674240 -57614422 + L1MA3 LINE L1 4961 6304 -1 2703 149 56 4 chr4 126674786 126675301 -57613361 - L1MA5 LINE L1 -5 6295 5754 2146 122 3 0 chr4 126675492 126675788 -57612874 + AluSg SINE Alu 1 297 -13 187 280 42 127 chr4 126675866 126675984 -57612678 - L2 LINE L2 -23 3249 3142 231 257 0 14 chr4 126678610 126678680 -57609982 + CT-rich Low_complexity Low_complexity 2 70 0 272 354 10 0 chr4 126678748 126678847 -57609815 - MIR3 SINE MIR -11 197 98 2004 106 13 17 chr4 126679368 126679669 -57608993 + AluSc SINE Alu 1 300 -9 23 54 0 0 chr4 126680007 126680044 -57608618 + AT_rich Low_complexity Low_complexity 1 37 0 336 340 43 5 chr4 126680627 126680836 -57607826 + L1MEc LINE L1 92 308 -6088 1884 250 123 25 chr4 126680842 126682058 -57606604 + L1MEc LINE L1 2009 3308 -2907 2473 197 38 11 chr4 126682392 126682926 -57605736 - MER44D DNA MER2_type 0 605 3 21 36 0 0 chr4 126684102 126684130 -57604532 + AT_rich Low_complexity Low_complexity 1 28 0 320 346 140 0 chr4 126684871 126685085 -57603577 - MIR SINE MIR 0 262 19 1524 309 67 2 chr4 126685129 126685683 -57602979 + MLT1G LTR MaLR 1 590 0 278 330 0 10 chr4 126685685 126685785 -57602877 + MLT1G-int LTR MaLR 4 102 -1269 6612 152 63 9 chr4 126686256 126687261 -57601401 - Tigger3b DNA MER2_type -1797 1231 283 2636 91 6 0 chr4 126687261 126687614 -57601048 - THE1A LTR MaLR 0 355 1 11477 97 5 5 chr4 126687614 126689194 -57599468 - THE1A-int LTR MaLR 0 1580 1 2659 96 0 3 chr4 126689194 126689550 -57599112 - THE1A LTR MaLR 0 355 1 6612 152 63 9 chr4 126689550 126689708 -57598954 - Tigger3b DNA MER2_type -2744 284 2 328 291 0 101 chr4 126690160 126690339 -57598323 + MLT1G-int LTR MaLR 1023 1183 -188 870 273 55 8 chr4 126690529 126690785 -57597877 + MLT1G LTR MaLR 2 269 -321 1948 115 39 7 chr4 126690793 126691079 -57597583 + AluSx SINE Alu 1 295 -17 1126 158 0 0 chr4 126691175 126691346 -57597316 - AluSg/x SINE Alu -22 290 120 2067 134 42 39 chr4 126691728 126692087 -57596575 - THE1B LTR MaLR -4 360 1 254 289 0 11 chr4 126692284 126692367 -57596295 - L1MC4 LINE L1 -1339 6703 6620 2044 151 61 38 chr4 126692367 126692791 -57595871 + Tigger2a DNA MER2_type 1 434 0 25 0 0 0 chr4 126693435 126693460 -57595202 + AT_rich Low_complexity Low_complexity 1 25 0 260 186 57 14 chr4 126694559 126694629 -57594033 + MER117 DNA MER1_type 16 88 -109 203 269 0 0 chr4 126694739 126694791 -57593871 + MIR3 SINE MIR 157 208 0 298 247 94 0 chr4 126695370 126695455 -57593207 - MIR SINE MIR 0 262 170 235 150 25 0 chr4 126695687 126695727 -57592935 - L2 LINE L2 -8 3305 3265 203 215 15 0 chr4 126698356 126698421 -57590241 + (TA)n Simple_repeat Simple_repeat 2 67 0 4020 153 44 3 chr4 126698841 126699575 -57589087 + L1MA4 LINE L1 5531 6294 -6 21 0 0 0 chr4 126699584 126699605 -57589057 + AT_rich Low_complexity Low_complexity 1 21 0 1423 198 49 57 chr4 126699624 126699791 -57588871 + MLT1A1 LTR MaLR 13 180 -185 1864 145 24 0 chr4 126699791 126700087 -57588575 - AluSx SINE Alu -9 303 1 1423 198 49 57 chr4 126700087 126700268 -57588394 + MLT1A1 LTR MaLR 180 358 -7 454 264 90 36 chr4 126703006 126703173 -57585489 + MIR SINE MIR 71 246 -16 255 296 65 139 chr4 126704749 126705209 -57583453 + L2 LINE L2 2847 3272 0 944 271 98 55 chr4 126705236 126705315 -57583347 + L1ME LINE L1 31 105 -5965 192 40 0 0 chr4 126705315 126705340 -57583322 + (CA)n Simple_repeat Simple_repeat 2 26 0 944 271 98 55 chr4 126705340 126705773 -57582889 + L1ME LINE L1 105 565 -5505 599 319 178 42 chr4 126705774 126706704 -57581958 - L2 LINE L2 -208 3064 1981 23 33 0 0 chr4 126706917 126706947 -57581715 + AT_rich Low_complexity Low_complexity 1 30 0 393 271 136 7 chr4 126707289 126707429 -57581233 + MIR SINE MIR 10 167 -95 489 325 80 5 chr4 126707717 126707905 -57580757 + MIR SINE MIR 1 202 -60 341 308 57 19 chr4 126707907 126708066 -57580596 + MLT1J2 LTR MaLR 1 165 -285 293 286 64 6 chr4 126708130 126708287 -57580375 + MLT1J2 LTR MaLR 284 408 -1 23 0 0 0 chr4 126708867 126708890 -57579772 + AT_rich Low_complexity Low_complexity 1 23 0 1840 177 104 35 chr4 126709761 126710214 -57578448 + LTR2B LTR ERV1 7 490 0 212 364 78 13 chr4 126710246 126710400 -57578262 - L2 LINE L2 -23 3290 3127 264 333 92 35 chr4 126711758 126711932 -57576730 - MIR3 SINE MIR -5 203 20 23 0 0 0 chr4 126711973 126711996 -57576666 + AT_rich Low_complexity Low_complexity 1 23 0 291 274 34 51 chr4 126712249 126712366 -57576296 - MIR3 SINE MIR -10 198 84 26 0 0 0 chr4 126712492 126712518 -57576144 + AT_rich Low_complexity Low_complexity 1 26 0 209 119 0 24 chr4 126712821 126712863 -57575799 + (TAA)n Simple_repeat Simple_repeat 1 41 0 308 256 33 11 chr4 126712863 126712953 -57575709 + L2 LINE L2 3222 3313 0 6175 19 4 1 chr4 126713551 126714275 -57574387 + L1PA3 LINE L1 5430 6155 0 1431 222 7 7 chr4 126716963 126717247 -57571415 + MER70A LTR ERVL 1 284 -188 2655 91 11 0 chr4 126717912 126718285 -57570377 - L1PA6 LINE L1 -3126 3020 2644 12793 64 9 2 chr4 126718285 126721404 -57567258 + L1PA6 LINE L1 3020 6154 0 479 95 0 48 chr4 126721604 126721688 -57566974 + MADE1 DNA Mariner 1 80 0 273 119 0 68 chr4 126722003 126722062 -57566600 + L1PA8 LINE L1 6113 6167 -1 1886 213 3 3 chr4 126722188 126722549 -57566113 + MLT1A1 LTR MaLR 1 361 -4 230 231 90 0 chr4 126723993 126724071 -57564591 + L1MC4 LINE L1 6621 6705 -1337 490 321 58 23 chr4 126724412 126724720 -57563942 + L1M4 LINE L1 2561 2879 -3267 237 189 19 0 chr4 126724758 126724811 -57563851 - L1MEc LINE L1 -3161 3054 3001 231 89 54 0 chr4 126724823 126724879 -57563783 + (TA)n Simple_repeat Simple_repeat 1 59 0 1851 240 63 38 chr4 126724879 126725277 -57563385 - L1MEc LINE L1 -3218 2997 2611 2119 99 3 10 chr4 126725277 126725569 -57563093 - AluSx SINE Alu 0 312 23 1851 240 63 38 chr4 126725569 126725763 -57562899 - L1MEc LINE L1 -3604 2611 2423 1262 223 64 37 chr4 126725763 126726139 -57562523 - MLT1B LTR MaLR -4 386 1 1851 240 63 38 chr4 126726139 126726565 -57562097 - L1MEc LINE L1 -3792 2423 1986 887 146 0 0 chr4 126726583 126726713 -57561949 + AluSg/x SINE Alu 173 302 -10 259 250 50 0 chr4 126726908 126726988 -57561674 + L1P LINE L1 4901 4984 -1162 26 0 0 0 chr4 126728358 126728384 -57560278 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr4 126728628 126728649 -57560013 + AT_rich Low_complexity Low_complexity 1 21 0 359 313 66 43 chr4 126728729 126729386 -57559276 + L1MA7 LINE L1 5175 5884 -294 249 216 20 20 chr4 126729715 126729863 -57558799 + (TAGA)n Simple_repeat Simple_repeat 2 149 0 29 0 0 0 chr4 126729979 126730008 -57558654 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4 126730438 126730461 -57558201 + AT_rich Low_complexity Low_complexity 1 23 0 7492 32 0 2 chr4 126730483 126731766 -57556896 - L1PA3 LINE L1 0 6155 4874 22 35 0 0 chr4 126734175 126734204 -57554458 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 126734646 126734674 -57553988 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr4 126734838 126734868 -57553794 + AT_rich Low_complexity Low_complexity 1 30 0 28 99 0 0 chr4 126736523 126736614 -57552048 + AT_rich Low_complexity Low_complexity 1 91 0 1216 177 53 27 chr4 126737194 126737493 -57551169 - L1MC3 LINE L1 -17 7768 7462 1979 201 38 18 chr4 126737493 126737937 -57550725 + L1MC3 LINE L1 7000 7452 -333 240 35 0 0 chr4 126739957 126739986 -57548676 + (CA)n Simple_repeat Simple_repeat 2 30 0 4876 205 37 22 chr4 126740671 126742275 -57546387 - L1MC2 LINE L1 -11 6333 4639 2228 67 0 3 chr4 126743360 126743643 -57545019 - AluY SINE Alu -2 309 28 7248 207 50 26 chr4 126743777 126743892 -57544770 + L1PB4 LINE L1 2221 2332 -3814 279 0 0 0 chr4 126743892 126743923 -57544739 + (TA)n Simple_repeat Simple_repeat 2 32 0 7248 207 50 26 chr4 126743923 126744329 -57544333 + L1PB4 LINE L1 2332 2727 -3419 401 50 17 0 chr4 126744329 126744389 -57544273 + (TA)n Simple_repeat Simple_repeat 1 61 0 7248 207 50 26 chr4 126744389 126745218 -57543444 + L1PB4 LINE L1 2727 3636 -2510 1647 182 3 14 chr4 126745218 126745509 -57543153 + AluJb SINE Alu 1 288 -24 7248 207 50 26 chr4 126745509 126746090 -57542572 + L1PB4 LINE L1 3636 4201 -1945 483 50 0 0 chr4 126746079 126746139 -57542523 - L1P3 LINE L1 -498 5674 5615 * 3783 80 25 6 chr4 126746110 126746653 -57542009 + L1PA7 LINE L1 5621 6154 0 * 4028 195 2 7 chr4 126746648 126747472 -57541190 + L1PB4 LINE L1 4180 4999 -1147 1598 148 19 19 chr4 126747500 126747815 -57540847 + L1PB4 LINE L1 5785 6138 -18 226 250 0 0 chr4 126747815 126747875 -57540787 - Tigger1 DNA MER2_type -2348 70 11 181 353 88 0 chr4 126747904 126747972 -57540690 - L2 LINE L2 -1181 2133 2060 2238 87 0 13 chr4 126748270 126748569 -57540093 - AluSq SINE Alu -16 297 3 2364 245 47 68 chr4 126748679 126749423 -57539239 - MER21B LTR ERV1 -124 739 12 2840 196 60 3 chr4 126750090 126750656 -57538006 + L1MC1 LINE L1 132 729 -5811 1117 208 34 37 chr4 126750691 126751060 -57537602 + L1MC1 LINE L1 2554 2922 -3618 402 181 56 0 chr4 126751095 126751167 -57537495 - Tigger3(Golem) DNA MER2_type -2950 79 4 5119 187 18 12 chr4 126751174 126752517 -57536145 + L1MC1 LINE L1 5241 6727 0 230 314 26 99 chr4 126752624 126752815 -57535847 + LTR33 LTR ERVL 12 188 -333 1527 199 29 11 chr4 126754359 126754636 -57534026 + AluJb SINE Alu 1 282 -30 228 67 0 0 chr4 126754636 126754666 -57533996 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 24 32 0 0 chr4 126755034 126755065 -57533597 + AT_rich Low_complexity Low_complexity 1 31 0 186 133 0 0 chr4 126755428 126755458 -57533204 + (TCTA)n Simple_repeat Simple_repeat 1 30 0 312 103 29 15 chr4 126755636 126755704 -57532958 + (TA)n Simple_repeat Simple_repeat 2 70 0 429 275 33 8 chr4 126755833 126755953 -57532709 - MLT1I LTR MaLR -214 195 73 195 69 0 0 chr4 126756559 126756588 -57532074 + (A)n Simple_repeat Simple_repeat 1 29 0 518 275 190 15 chr4 126757609 126757809 -57530853 - MIR SINE MIR 0 262 28 4434 128 3 41 chr4 126758775 126759535 -57529127 - Tigger4(Zombi) DNA MER2_type -3 2728 1998 665 257 21 12 chr4 126759551 126759792 -57528870 + L1MEc LINE L1 1837 2079 -4317 227 186 0 0 chr4 126759798 126759841 -57528821 + (AAATG)n Simple_repeat Simple_repeat 1 43 0 241 319 251 0 chr4 126759841 126760004 -57528658 - L2 LINE L2 -1079 2235 2032 2160 99 0 29 chr4 126760349 126760661 -57528001 - AluSx SINE Alu -9 303 1 273 203 63 25 chr4 126760743 126760822 -57527840 + L1M4 LINE L1 5031 5112 -1034 22 0 0 0 chr4 126761224 126761246 -57527416 + AT_rich Low_complexity Low_complexity 1 22 0 501 231 104 131 chr4 126761260 126761520 -57527142 + MLT1F1 LTR MaLR 10 274 -280 834 175 45 23 chr4 126761544 126761721 -57526941 + MLT1F1 LTR MaLR 387 567 0 274 241 0 17 chr4 126762712 126762770 -57525892 - L2 LINE L2 -13 3300 3244 2286 101 0 3 chr4 126763114 126763421 -57525241 + AluSg SINE Alu 1 306 -4 202 62 47 62 chr4 126764607 126764671 -57523991 + T-rich Low_complexity Low_complexity 2 64 0 233 308 22 33 chr4 126764931 126765022 -57523640 + MIR SINE MIR 63 152 -110 351 0 0 0 chr4 126765171 126765210 -57523452 + (CA)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr4 126767582 126767610 -57521052 + AT_rich Low_complexity Low_complexity 1 28 0 2296 113 0 0 chr4 126768017 126768326 -57520336 - AluSc SINE Alu 0 309 1 455 179 0 0 chr4 126768856 126768934 -57519728 + AluJ/FLAM SINE Alu 2 79 -233 852 319 50 26 chr4 126769004 126769383 -57519279 + LTR16C LTR ERVL 104 491 0 854 161 42 0 chr4 126769549 126769717 -57518945 + L1MA3 LINE L1 6127 6301 -4 1030 293 81 16 chr4 126770287 126770360 -57518302 - MLT1I LTR MaLR 0 409 342 1600 168 3 44 chr4 126770360 126770675 -57517987 - AluJb SINE Alu -10 302 1 1030 293 81 16 chr4 126770675 126770983 -57517679 - MLT1I LTR MaLR -67 342 3 185 33 82 33 chr4 126771150 126771211 -57517451 + (TA)n Simple_repeat Simple_repeat 1 64 0 204 182 52 13 chr4 126771224 126771301 -57517361 + (TTATA)n Simple_repeat Simple_repeat 2 81 0 2151 114 0 19 chr4 126772907 126773246 -57515416 + AluSq SINE Alu 1 313 0 24 67 0 0 chr4 126773710 126773755 -57514907 + AT_rich Low_complexity Low_complexity 1 45 0 1881 152 23 143 chr4 126774032 126774244 -57514418 + L1MA6 LINE L1 5571 5682 -618 183 42 0 0 chr4 126774244 126774268 -57514394 + (CA)n Simple_repeat Simple_repeat 1 24 0 1881 152 23 143 chr4 126774268 126774587 -57514075 + L1MA6 LINE L1 5682 6038 -262 540 291 71 64 chr4 126774615 126775089 -57513573 + L1M2 LINE L1 4 489 -6349 7617 219 33 70 chr4 126776213 126777155 -57511507 + L1PA16 LINE L1 866 1841 -4382 2386 93 3 0 chr4 126777155 126777465 -57511197 - AluSx SINE Alu -1 311 1 7617 219 33 70 chr4 126777465 126777672 -57510990 + L1PA16 LINE L1 1841 2054 -4169 1930 105 4 4 chr4 126777672 126777938 -57510724 + AluSc SINE Alu 31 296 -13 7617 219 33 70 chr4 126777938 126781481 -57507181 + L1PA16 LINE L1 2054 5389 -834 2109 125 10 7 chr4 126781481 126781784 -57506878 + AluSx SINE Alu 1 304 -8 7617 219 33 70 chr4 126781784 126782498 -57506164 + L1PA16 LINE L1 5389 6128 -95 364 210 0 3 chr4 126782501 126782627 -57506035 + AluS SINE Alu 227 332 0 901 174 87 93 chr4 126782630 126782961 -57505701 - MLT1A1 LTR MaLR -60 305 1 1845 147 19 25 chr4 126784210 126784524 -57504138 + THE1C LTR MaLR 1 312 -63 22 0 0 0 chr4 126785257 126785279 -57503383 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr4 126786782 126786817 -57501845 + AT_rich Low_complexity Low_complexity 1 35 0 932 290 75 39 chr4 126787067 126787183 -57501479 - L2 LINE L2 -715 2599 2489 209 0 0 88 chr4 126787183 126787217 -57501445 + (TTATA)n Simple_repeat Simple_repeat 5 35 0 932 290 75 39 chr4 126787217 126787541 -57501121 - L2 LINE L2 -825 2489 2143 387 325 71 100 chr4 126787559 126788369 -57500293 + L1PBb LINE L1 1 806 -6403 * 437 361 41 8 chr4 126788358 126788602 -57500060 + L1PBb LINE L1 1057 1308 -5901 4085 232 42 91 chr4 126788752 126789711 -57498951 + L1PBb LINE L1 1376 2381 -4827 444 19 0 0 chr4 126789711 126789764 -57498898 + (CA)n Simple_repeat Simple_repeat 2 54 0 414 0 0 0 chr4 126789763 126789809 -57498853 + (TA)n Simple_repeat Simple_repeat 2 47 0 * 4085 232 42 91 chr4 126789764 126789809 -57498853 + L1PBb LINE L1 2381 2427 -4781 2061 85 3 69 chr4 126789809 126790114 -57498548 - AluSq SINE Alu -28 285 1 4085 232 42 91 chr4 126790114 126790685 -57497977 + L1PBb LINE L1 2427 2902 -4306 189 0 0 0 chr4 126790685 126790706 -57497956 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 4085 232 42 91 chr4 126790706 126790941 -57497721 + L1PBb LINE L1 2902 3147 -4061 2216 123 0 0 chr4 126791244 126791544 -57497118 - AluSx SINE Alu -11 301 2 1632 209 0 6 chr4 126791709 126792020 -57496642 - AluJb SINE Alu -3 309 1 810 128 88 20 chr4 126792107 126792255 -57496407 - MER6B DNA MER2_type -50 160 3 451 254 58 0 chr4 126792390 126792528 -57496134 - L1MEc LINE L1 -3704 2511 2366 1146 241 62 41 chr4 126792531 126792900 -57495762 - MLT1B LTR MaLR -4 386 10 667 297 41 41 chr4 126792915 126793329 -57495333 - L1MEc LINE L1 -3992 2404 1991 593 200 8 15 chr4 126793352 126793482 -57495180 + AluSg/x SINE Alu 171 299 -10 3448 159 19 2 chr4 126793801 126794417 -57494245 - L1MA4 LINE L1 -210 6090 5464 672 183 0 0 chr4 126794419 126794539 -57494123 + L1MA4 LINE L1 5356 5475 -825 23 33 0 0 chr4 126794655 126794685 -57493977 + AT_rich Low_complexity Low_complexity 1 30 0 327 182 0 0 chr4 126794736 126794813 -57493849 + (TGGA)n Simple_repeat Simple_repeat 4 80 0 185 330 99 0 chr4 126796155 126796246 -57492416 - MIR SINE MIR -156 106 7 189 295 33 0 chr4 126796402 126796463 -57492199 + MIR SINE MIR 195 257 -5 1567 169 0 86 chr4 126796582 126796907 -57491755 - AluJb SINE Alu -15 297 1 212 299 11 35 chr4 126797272 126797359 -57491303 + MIR SINE MIR 178 262 0 31 0 0 0 chr4 126797383 126797414 -57491248 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr4 126797531 126797561 -57491101 + AT_rich Low_complexity Low_complexity 1 30 0 254 164 18 0 chr4 126797743 126797798 -57490864 + GA-rich Low_complexity Low_complexity 2 57 0 190 361 9 28 chr4 126797889 126797997 -57490665 - MIR3 SINE MIR -14 194 89 2280 98 3 0 chr4 126799351 126799657 -57489005 - AluSx SINE Alu -3 309 3 216 149 0 0 chr4 126799733 126799780 -57488882 + (TG)n Simple_repeat Simple_repeat 2 48 0 340 305 11 0 chr4 126799993 126800088 -57488574 + MIR SINE MIR 52 147 -115 788 263 112 52 chr4 126800664 126801102 -57487560 - MLT1C LTR MaLR -3 464 1 250 377 34 0 chr4 126801373 126801519 -57487143 + MER103 DNA DNA 14 164 -2 185 152 0 0 chr4 126801703 126801736 -57486926 - L2 LINE L2 -8 3305 3273 26 0 0 0 chr4 126802448 126802474 -57486188 + AT_rich Low_complexity Low_complexity 1 26 0 377 318 6 53 chr4 126803550 126803720 -57484942 + MER5A DNA MER1_type 27 188 -1 23 33 0 0 chr4 126804028 126804058 -57484604 + AT_rich Low_complexity Low_complexity 1 30 0 2045 118 0 46 chr4 126804876 126805199 -57483463 - AluSx SINE Alu 0 312 5 915 294 83 18 chr4 126805430 126805866 -57482796 + LTR16B LTR ERVL 1 464 0 955 347 51 34 chr4 126805867 126806518 -57482144 + HERV16 LTR ERVL 3 664 -4332 1789 172 27 27 chr4 126806641 126806979 -57481683 + LTR32 LTR ERVL 15 352 -119 850 161 7 7 chr4 126807031 126807186 -57481476 + LTR32 LTR ERVL 317 471 0 1978 348 41 18 chr4 126807196 126809578 -57479084 + HERV16 LTR ERVL 798 3392 -1905 45 87 0 0 chr4 126809987 126810102 -57478560 + AT_rich Low_complexity Low_complexity 1 115 0 2377 166 52 2 chr4 126810157 126810602 -57478060 + L1PB4 LINE L1 5689 6155 -1 306 265 86 43 chr4 126810750 126810912 -57477750 + L1ME4a LINE L1 5742 5910 -211 23 68 0 0 chr4 126811008 126811052 -57477610 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr4 126811181 126811203 -57477459 + AT_rich Low_complexity Low_complexity 1 22 0 2549 52 0 0 chr4 126811331 126811638 -57477024 - AluY SINE Alu -4 307 1 220 70 47 0 chr4 126811750 126811793 -57476869 + (TA)n Simple_repeat Simple_repeat 1 45 0 1347 234 17 6 chr4 126811825 126812184 -57476478 - L1MEc LINE L1 -5425 971 609 2178 161 83 18 chr4 126812184 126812618 -57476044 + MLT1C LTR MaLR 1 462 -5 1479 255 32 70 chr4 126812622 126813183 -57475479 - L1MEc LINE L1 -5783 613 74 624 319 157 20 chr4 126813232 126813646 -57475016 + L2 LINE L2 2661 3178 -135 1111 174 67 18 chr4 126813646 126813870 -57474792 + MER46A DNA MER2_type 2 236 0 624 319 157 20 chr4 126813870 126814006 -57474656 + L2 LINE L2 3178 3294 -19 23 0 0 0 chr4 126814022 126814045 -57474617 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr4 126814608 126814636 -57474026 + AT_rich Low_complexity Low_complexity 1 28 0 472 286 97 25 chr4 126815906 126816144 -57472518 - MLT1J LTR MaLR -144 367 113 244 183 28 14 chr4 126816253 126816324 -57472338 + L1MCa LINE L1 1996 2067 -4359 313 247 26 0 chr4 126816325 126816402 -57472260 - L1MC4 LINE L1 -1350 6692 6614 476 122 40 0 chr4 126816879 126816953 -57471709 + Tigger3(Golem) DNA MER2_type 2 78 -2951 811 174 14 0 chr4 126816953 126817091 -57471571 + BC200 scRNA scRNA 1 140 -60 287 51 26 0 chr4 126817091 126817130 -57471532 + Tigger3(Golem) DNA MER2_type 65 104 -2925 * 4064 129 59 7 chr4 126817125 126817837 -57470825 + Tigger3(Golem) DNA MER2_type 2277 3025 -4 259 349 60 36 chr4 126818082 126818248 -57470414 - MIR SINE MIR -87 175 6 490 272 114 61 chr4 126818951 126819344 -57469318 - MLT1J2 LTR MaLR 0 450 37 21 0 0 0 chr4 126819531 126819552 -57469110 + AT_rich Low_complexity Low_complexity 1 21 0 1557 235 12 6 chr4 126820080 126820416 -57468246 + MSTD LTR MaLR 1 338 -58 1947 149 0 16 chr4 126820416 126820732 -57467930 - AluSx SINE Alu -1 311 1 4247 137 29 33 chr4 126820737 126821108 -57467554 - L1PB4 LINE L1 0 6156 5785 198 0 0 0 chr4 126821108 126821130 -57467532 + (TG)n Simple_repeat Simple_repeat 2 23 0 4247 137 29 33 chr4 126821130 126821545 -57467117 - L1PB4 LINE L1 -371 5785 5373 395 143 0 0 chr4 126821547 126821610 -57467052 + MSTD LTR MaLR 334 396 0 2104 112 7 10 chr4 126821649 126821945 -57466717 - AluSx SINE Alu -17 295 1 24 67 0 0 chr4 126821970 126822015 -57466647 + AT_rich Low_complexity Low_complexity 1 45 0 370 330 44 16 chr4 126823964 126824146 -57464516 + MIR SINE MIR 32 218 -44 256 326 11 0 chr4 126824636 126824728 -57463934 - MER94 DNA DNA -3 131 39 381 266 62 0 chr4 126824848 126824976 -57463686 + L1MC4a LINE L1 5118 5253 -893 1160 271 199 15 chr4 126824989 126825674 -57462988 + L1MC4a LINE L1 5272 6082 -1726 1669 221 15 0 chr4 126825691 126826093 -57462569 - L1 LINE L1 -1647 4499 4092 3652 185 56 4 chr4 126826093 126826790 -57461872 + MER44D DNA MER2_type 1 605 0 517 261 105 45 chr4 126826795 126827128 -57461534 + L1MC4a LINE L1 6112 6464 -1344 336 186 0 57 chr4 126827128 126827198 -57461464 - MER2 DNA MER2_type -1 344 279 37 62 0 0 chr4 126827270 126827335 -57461327 + AT_rich Low_complexity Low_complexity 1 65 0 632 305 74 44 chr4 126827412 126827762 -57460900 + L1ME3A LINE L1 5302 5673 -448 2301 144 66 7 chr4 126827762 126828172 -57460490 + MER61C LTR ERV1 1 434 0 632 305 74 44 chr4 126828172 126828320 -57460342 + L1ME3A LINE L1 5673 5815 -306 27 49 0 0 chr4 126828354 126828395 -57460267 + AT_rich Low_complexity Low_complexity 1 41 0 2068 121 7 3 chr4 126828398 126828695 -57459967 + AluSq SINE Alu 1 298 -15 180 0 0 0 chr4 126828696 126828716 -57459946 + (TA)n Simple_repeat Simple_repeat 2 21 0 11984 137 50 91 chr4 126829208 126830650 -57458012 + Tigger1 DNA MER2_type 1 1500 -918 2377 88 0 0 chr4 126830650 126830947 -57457715 - AluY SINE Alu -14 297 1 11984 137 50 91 chr4 126830947 126830985 -57457677 + Tigger1 DNA MER2_type 1500 1538 -880 781 222 12 12 chr4 126830985 126831156 -57457506 + FRAM SINE Alu 1 171 -5 11984 137 50 91 chr4 126831156 126832024 -57456638 + Tigger1 DNA MER2_type 1538 2418 0 306 216 68 0 chr4 126832424 126832498 -57456164 + L2 LINE L2 3175 3253 -60 282 312 145 47 chr4 126833022 126833256 -57455406 - MIR SINE MIR 0 262 6 21 0 0 0 chr4 126833750 126833771 -57454891 + AT_rich Low_complexity Low_complexity 1 21 0 20054 104 16 12 chr4 126834547 126837530 -57451132 + L1PA6 LINE L1 11 3004 -3142 17042 58 9 5 chr4 126837532 126840521 -57448141 + L1PA6 LINE L1 3139 6150 -4 182 149 64 43 chr4 126841320 126841367 -57447295 + MIR SINE MIR 67 114 -148 341 195 3 2 chr4 126841390 126841465 -57447197 - MLT1E3 LTR MaLR 0 624 480 23 0 0 0 chr4 126841503 126841526 -57447136 + AT_rich Low_complexity Low_complexity 1 23 0 1016 219 18 35 chr4 126841650 126841878 -57446784 - MER58A DNA MER1_type 0 224 1 270 0 0 0 chr4 126841897 126841927 -57446735 + (CA)n Simple_repeat Simple_repeat 2 31 0 530 316 42 0 chr4 126844191 126844406 -57444256 + L1ME3A LINE L1 5942 6165 -5 29 60 0 0 chr4 126844668 126844718 -57443944 + AT_rich Low_complexity Low_complexity 1 50 0 324 0 0 0 chr4 126844736 126844772 -57443890 + (CA)n Simple_repeat Simple_repeat 2 37 0 579 338 72 0 chr4 126846358 126846595 -57442067 - MIR SINE MIR -3 259 6 48 32 0 0 chr4 126846776 126846838 -57441824 + AT_rich Low_complexity Low_complexity 1 62 0 306 207 17 0 chr4 126848366 126848424 -57440238 - MLT1C LTR MaLR -405 62 4 1538 160 11 133 chr4 126849211 126849476 -57439186 - MLT1B LTR MaLR 0 390 94 213 39 0 0 chr4 126849476 126849502 -57439160 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1366 192 44 0 chr4 126849502 126849773 -57438889 - AluJb SINE Alu -29 283 1 1538 160 11 133 chr4 126849773 126849950 -57438712 - MLT1B LTR MaLR -294 96 1 206 103 0 26 chr4 126850141 126850180 -57438482 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 201 155 86 0 chr4 126850200 126850258 -57438404 + A-rich Low_complexity Low_complexity 1 63 0 257 305 105 9 chr4 126850263 126850368 -57438294 + L2 LINE L2 3199 3313 0 26 50 0 0 chr4 126850451 126850491 -57438171 + AT_rich Low_complexity Low_complexity 1 40 0 421 325 108 5 chr4 126854131 126854343 -57434319 - MIR SINE MIR 0 262 29 1154 328 80 20 chr4 126854578 126855118 -57433544 + L1MCb LINE L1 5 576 -5469 989 229 45 112 chr4 126855188 126855506 -57433156 - MSTB2 LTR MaLR 0 457 182 2070 118 3 25 chr4 126855506 126855821 -57432841 + AluSx SINE Alu 1 308 -4 989 229 45 112 chr4 126855821 126855992 -57432670 - MSTB2 LTR MaLR -275 182 1 1738 253 61 12 chr4 126856015 126856588 -57432074 + L1MCb LINE L1 569 1169 -4876 * 1965 276 47 45 chr4 126856558 126858213 -57430449 + L1MCb LINE L1 1631 3235 -3329 424 343 96 30 chr4 126858214 126858546 -57430116 - L3 LINE CR1 -150 1427 1074 306 0 0 0 chr4 126859774 126859808 -57428854 + (CA)n Simple_repeat Simple_repeat 1 34 0 25 0 0 0 chr4 126861283 126861308 -57427354 + AT_rich Low_complexity Low_complexity 1 25 0 191 356 97 31 chr4 126863020 126863229 -57425433 - L2 LINE L2 -162 3110 2916 1963 140 6 43 chr4 126863229 126863392 -57425270 + MER44D DNA MER2_type 1 169 -2322 2239 109 0 3 chr4 126863392 126863703 -57424959 - AluSq SINE Alu -3 310 1 1963 140 6 43 chr4 126863703 126863889 -57424773 + MER44D DNA MER2_type 169 607 -2 191 356 97 31 chr4 126863889 126864117 -57424545 - L2 LINE L2 -356 2916 2656 314 242 8 89 chr4 126864372 126864496 -57424166 - MLT1H LTR MaLR 0 549 436 306 261 34 34 chr4 126864647 126864766 -57423896 - MLT1H LTR MaLR -388 161 43 23 0 0 0 chr4 126865120 126865143 -57423519 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 126865300 126865328 -57423334 + AT_rich Low_complexity Low_complexity 1 28 0 297 51 0 0 chr4 126865798 126865837 -57422825 + (CA)n Simple_repeat Simple_repeat 1 39 0 362 300 47 12 chr4 126866858 126867028 -57421634 + L1ME LINE L1 5516 5691 -430 231 222 0 0 chr4 126866998 126867052 -57421610 - L1MC4 LINE L1 -1336 6706 6653 * 209 137 26 43 chr4 126868227 126868344 -57420318 + (TATAA)n Simple_repeat Simple_repeat 3 117 0 5242 138 34 57 chr4 126868819 126869897 -57418765 - L1MA9 LINE L1 0 6312 5259 1773 213 37 3 chr4 126869897 126870250 -57418412 - MLT1A1 LTR MaLR 0 365 1 5242 138 34 57 chr4 126870250 126870448 -57418214 - L1MA9 LINE L1 -1053 5259 5058 1552 213 6 28 chr4 126871249 126871568 -57417094 + AluJo SINE Alu 1 312 0 380 200 11 0 chr4 126871573 126871668 -57416994 + GA-rich Low_complexity Low_complexity 4 99 0 28 0 0 0 chr4 126871894 126871922 -57416740 + AT_rich Low_complexity Low_complexity 1 28 0 693 343 62 4 chr4 126872449 126872882 -57415780 - MLT1H1 LTR MaLR -77 518 1 2545 40 0 0 chr4 126874213 126874512 -57414150 + AluY SINE Alu 1 299 -12 492 325 167 13 chr4 126874571 126874939 -57413723 - L2 LINE L2 -257 3056 2620 353 309 68 55 chr4 126876141 126876377 -57412285 - L2 LINE L2 -454 2860 2622 561 325 45 16 chr4 126876966 126877209 -57411453 + MIR SINE MIR 13 262 0 488 153 0 59 chr4 126877766 126877851 -57410811 - MLT1E2 LTR MaLR -544 82 3 2073 130 0 3 chr4 126877980 126878287 -57410375 - AluSg SINE Alu -4 306 1 213 108 0 0 chr4 126878292 126878329 -57410333 + (T)n Simple_repeat Simple_repeat 1 37 0 27 49 0 0 chr4 126878584 126878625 -57410037 + AT_rich Low_complexity Low_complexity 1 41 0 1506 225 42 92 chr4 126879706 126880350 -57408312 - LTR9 LTR ERV1 0 612 1 511 246 131 46 chr4 126880400 126880797 -57407865 - LTR33 LTR ERVL -3 518 1 1225 214 57 64 chr4 126881663 126882084 -57406578 + LTR52 LTR ERVL 1 418 -3 29 70 0 0 chr4 126883777 126883834 -57404828 + AT_rich Low_complexity Low_complexity 1 57 0 467 211 41 61 chr4 126883910 126884030 -57404632 - L1ME1 LINE L1 -2 6164 6046 2743 19 0 0 chr4 126884030 126884341 -57404321 + AluY SINE Alu 1 311 0 467 211 41 61 chr4 126884341 126884367 -57404295 - L1ME1 LINE L1 -120 6046 6021 837 223 10 31 chr4 126885812 126886005 -57402657 - MER5A DNA MER1_type 0 189 1 230 272 141 11 chr4 126887021 126887113 -57401549 - MER103 DNA DNA -2 164 61 294 146 11 0 chr4 126887114 126887176 -57401486 - MLT2B2 LTR ERVL 0 515 390 222 128 0 0 chr4 126887196 126887235 -57401427 + (GA)n Simple_repeat Simple_repeat 1 39 0 1974 215 10 46 chr4 126887240 126887719 -57400943 - MLT2B1 LTR ERVL -56 464 3 1517 166 38 6 chr4 126890012 126890326 -57398336 + MER33 DNA MER1_type 1 324 0 582 173 102 0 chr4 126891213 126891340 -57397322 + FLAM_C SINE Alu 1 140 -3 852 194 47 52 chr4 126891353 126891564 -57397098 + AluJo SINE Alu 99 308 -4 425 309 103 57 chr4 126892543 126892893 -57395769 + LTR16C LTR ERVL 79 444 -47 22 70 0 0 chr4 126893270 126893313 -57395349 + AT_rich Low_complexity Low_complexity 1 43 0 26 0 0 0 chr4 126893373 126893399 -57395263 + AT_rich Low_complexity Low_complexity 1 26 0 27 29 0 0 chr4 126893584 126893618 -57395044 + AT_rich Low_complexity Low_complexity 1 34 0 33 56 0 0 chr4 126894334 126894388 -57394274 + AT_rich Low_complexity Low_complexity 1 54 0 24 32 0 0 chr4 126894481 126894512 -57394150 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr4 126894845 126894873 -57393789 + AT_rich Low_complexity Low_complexity 1 28 0 191 59 0 29 chr4 126895144 126895178 -57393484 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 2401 78 0 3 chr4 126895456 126895765 -57392897 - AluSq SINE Alu -5 308 1 2457 58 0 13 chr4 126896652 126896961 -57391701 + AluY SINE Alu 1 305 -6 33 29 0 0 chr4 126896987 126897022 -57391640 + AT_rich Low_complexity Low_complexity 1 35 0 228 111 0 0 chr4 126898464 126898500 -57390162 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 309 297 44 0 chr4 126899521 126899612 -57389050 + MIR3 SINE MIR 87 181 -27 229 183 14 14 chr4 126899796 126899867 -57388795 + (TA)n Simple_repeat Simple_repeat 1 71 0 191 176 0 0 chr4 126899991 126900025 -57388637 + MIR SINE MIR 107 140 -122 245 258 40 73 chr4 126900960 126901084 -57387578 - L1MC4 LINE L1 -1 8041 7922 344 288 0 9 chr4 126901155 126901266 -57387396 - L1MC4 LINE L1 -144 7898 7789 446 274 9 0 chr4 126901348 126901454 -57387208 + MIR SINE MIR 60 166 -96 274 54 0 0 chr4 126901571 126901608 -57387054 - L1PA6 LINE L1 -9 6145 6109 197 250 54 87 chr4 126901650 126901742 -57386920 + L2 LINE L2 1130 1218 -2096 201 304 25 13 chr4 126902389 126902468 -57386194 - L2 LINE L2 -1034 2280 2201 180 250 250 0 chr4 126903821 126903881 -57384781 - L2 LINE L2 -2 3270 3196 2142 120 0 0 chr4 126904839 126905140 -57383522 - AluSx SINE Alu -11 301 1 25 51 0 0 chr4 126905361 126905400 -57383262 + AT_rich Low_complexity Low_complexity 1 39 0 394 319 64 82 chr4 126905519 126905971 -57382691 + L2 LINE L2 2828 3271 -1 448 197 0 23 chr4 126906029 126906161 -57382501 + (CATA)n Simple_repeat Simple_repeat 4 132 0 208 322 0 0 chr4 126906199 126906258 -57382404 + (CATATA)n Simple_repeat Simple_repeat 1 59 0 204 267 0 0 chr4 126907787 126907832 -57380830 + L2 LINE L2 3265 3309 -4 618 217 19 19 chr4 126908008 126908165 -57380497 + L1MB8 LINE L1 8 164 -6378 4025 246 59 40 chr4 126908206 126908970 -57379692 + L1MB8 LINE L1 510 1258 -5386 2091 138 3 3 chr4 126908970 126909281 -57379381 + AluSx SINE Alu 1 311 -1 4025 246 59 40 chr4 126909281 126910574 -57378088 + L1MB8 LINE L1 1258 2524 -4120 1796 122 84 0 chr4 126910574 126910860 -57377802 + L1PA16 LINE L1 5848 6157 -9 4025 246 59 40 chr4 126910860 126912104 -57376558 + L1MB8 LINE L1 2524 3997 -2647 3640 216 50 86 chr4 126912116 126914387 -57374275 + L1MB8 LINE L1 4274 6448 -228 670 175 25 0 chr4 126914398 126914518 -57374144 - L1MC1 LINE L1 -11 6322 6200 442 126 0 116 chr4 126914518 126914553 -57374109 - MSTB2 LTR MaLR -371 86 49 2197 107 23 0 chr4 126914553 126914852 -57373810 - AluSx SINE Alu -6 306 1 442 126 0 116 chr4 126914852 126914911 -57373751 - MSTB2 LTR MaLR -408 49 3 1933 114 35 3 chr4 126916317 126916606 -57372056 - AluSq SINE Alu -15 298 1 4667 133 10 4 chr4 126917080 126917787 -57370875 - MER50 LTR ERV1 -23 711 1 200 35 35 0 chr4 126917981 126918010 -57370652 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 803 60 0 0 chr4 126918011 126918111 -57370551 - L1PA8 LINE L1 -17 6155 6056 337 61 0 0 chr4 126918114 126918163 -57370499 + L1P LINE L1 5374 5422 -732 23 0 0 0 chr4 126918409 126918432 -57370230 + AT_rich Low_complexity Low_complexity 1 23 0 1035 149 35 35 chr4 126918559 126918760 -57369902 + MLT1B LTR MaLR 1 201 -189 7409 88 24 10 chr4 126918882 126921127 -57367535 + L1PA7 LINE L1 3732 6153 -1 533 153 10 0 chr4 126921130 126921228 -57367434 + MLT1D LTR MaLR 407 505 0 1665 124 23 8 chr4 126921230 126921489 -57367173 + AluSq SINE Alu 1 263 -50 704 320 25 37 chr4 126921516 126921838 -57366824 - LTR16C LTR ERVL -173 318 1 312 27 0 0 chr4 126922653 126922690 -57365972 + (TA)n Simple_repeat Simple_repeat 2 38 0 632 262 108 67 chr4 126922960 126923697 -57364965 + L1ME LINE L1 556 1366 -4895 5154 159 38 65 chr4 126923764 126925019 -57363643 + L1MA6 LINE L1 3671 4891 -1255 279 0 0 0 chr4 126925037 126925068 -57363594 + (CA)n Simple_repeat Simple_repeat 2 32 0 2665 172 14 8 chr4 126925068 126925569 -57363093 + L1MA6 LINE L1 5793 6296 -4 572 269 167 26 chr4 126925592 126926160 -57362502 + L1ME LINE L1 1545 2192 -4069 207 0 0 0 chr4 126926178 126926201 -57362461 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 1299 26 0 0 chr4 126926222 126926375 -57362287 - L1PA5 LINE L1 -2 6152 6000 12207 64 1 5 chr4 126926475 126928044 -57360618 - L1P LINE L1 -4573 1573 10 3382 158 2 10 chr4 126928117 126928693 -57359969 - MSTA-int LTR MaLR -1080 571 1 1616 150 232 20 chr4 126928693 126928745 -57359917 - MSTA LTR MaLR 0 428 388 2579 116 3 0 chr4 126928745 126929108 -57359554 + THE1B LTR MaLR 1 364 0 1616 150 232 20 chr4 126929108 126929408 -57359254 - MSTA LTR MaLR -40 388 1 372 125 28 0 chr4 126929408 126929480 -57359182 + L1MB2 LINE L1 6087 6160 -11 4645 255 58 9 chr4 126929483 126930850 -57357812 - Charlie1 DNA MER1_type -469 2292 858 248 242 16 0 chr4 126930877 126930939 -57357723 - Charlie1 DNA MER1_type -2585 176 114 294 339 8 8 chr4 126930941 126931062 -57357600 + L1M4 LINE L1 1 121 -6421 1689 206 100 23 chr4 126931114 126931555 -57357107 + L1MB2 LINE L1 5695 6169 -2 21 0 0 0 chr4 126931753 126931774 -57356888 + AT_rich Low_complexity Low_complexity 1 21 0 1894 284 70 64 chr4 126931878 126933149 -57355513 + L1M4 LINE L1 188 1466 -5076 739 235 20 5 chr4 126933145 126933349 -57355313 + L1M4 LINE L1 3716 3922 -2224 * 2432 221 49 22 chr4 126933352 126934043 -57354619 + L1M4 LINE L1 1457 2166 -4480 1091 152 0 0 chr4 126934059 126934217 -57354445 - AluSg/x SINE Alu -8 304 147 1227 131 42 9 chr4 126934471 126934685 -57353977 - pTR5 LTR ERV1 -2046 392 172 363 257 10 0 chr4 126934688 126934789 -57353873 - LTR30 LTR ERV1 -80 642 541 6577 132 76 30 chr4 126934789 126936013 -57352649 - pTR5 LTR ERV1 -416 2022 743 1357 236 80 13 chr4 126936013 126936564 -57352098 + L1M4 LINE L1 3224 3811 -2833 3168 229 104 33 chr4 126936566 126936813 -57351849 + L1M4 LINE L1 3949 4177 -2467 1524 207 16 10 chr4 126936813 126937117 -57351545 + AluJo SINE Alu 1 306 -6 3168 229 104 33 chr4 126937117 126938094 -57350568 + L1M4 LINE L1 4177 5261 -1383 561 170 0 0 chr4 126938113 126938213 -57350449 + L1MB5 LINE L1 6074 6173 -1 387 282 26 0 chr4 126938214 126938331 -57350331 - Charlie1 DNA MER1_type -2639 122 3 520 328 78 26 chr4 126938756 126939101 -57349561 - L2 LINE L2 0 3313 2951 24 32 0 0 chr4 126940344 126940375 -57348287 + AT_rich Low_complexity Low_complexity 1 31 0 27 29 0 0 chr4 126940920 126940954 -57347708 + AT_rich Low_complexity Low_complexity 1 34 0 1666 179 55 22 chr4 126941063 126941426 -57347236 - THE1C LTR MaLR 0 375 1 247 356 81 36 chr4 126941827 126942049 -57346613 - MIR SINE MIR -29 233 2 603 39 0 13 chr4 126943373 126943450 -57345212 + MLT1B LTR MaLR 306 381 -9 257 187 13 0 chr4 126943722 126943797 -57344865 + (TA)n Simple_repeat Simple_repeat 1 76 0 346 268 84 34 chr4 126944187 126944366 -57344296 - L1MC/D LINE L1 -2019 5789 5602 202 54 27 27 chr4 126944366 126944403 -57344259 + (GA)n Simple_repeat Simple_repeat 2 38 0 198 0 0 0 chr4 126944413 126944435 -57344227 + (TAGA)n Simple_repeat Simple_repeat 3 24 0 272 315 33 0 chr4 126944829 126944921 -57343741 - L1MC/D LINE L1 -2224 5584 5490 1443 251 66 43 chr4 126946470 126947183 -57341479 - MER49 LTR ERV1 -10 913 4 1280 157 9 0 chr4 126947185 126947401 -57341261 - L1MA9 LINE L1 -59 6253 6036 679 188 0 0 chr4 126947404 126947532 -57341130 - L1MA9 LINE L1 -520 5771 5644 2151 233 204 25 chr4 126947532 126948496 -57340166 - L1M3c LINE L1 -4868 2169 1028 947 223 139 8 chr4 126948498 126948749 -57339913 - L1M3c LINE L1 -6746 284 1 348 299 29 7 chr4 126948767 126948904 -57339758 - L1ME LINE L1 -503 5667 5528 367 280 0 0 chr4 126948987 126949094 -57339568 + L1MC4 LINE L1 7798 7904 -138 2321 179 43 16 chr4 126949187 126949673 -57338989 + L1MC1 LINE L1 5830 6328 -5 359 217 194 0 chr4 126949677 126949806 -57338856 + L1MEc LINE L1 2155 2308 -4088 21 57 0 0 chr4 126950752 126950787 -57337875 + AT_rich Low_complexity Low_complexity 1 35 0 225 291 43 71 chr4 126951060 126951201 -57337461 - MIR SINE MIR -24 238 102 2097 129 28 62 chr4 126952196 126952337 -57336325 - THE1C LTR MaLR 0 375 231 2212 132 5 45 chr4 126952337 126952716 -57335946 + THE1B LTR MaLR 1 364 0 2097 129 28 62 chr4 126952716 126952962 -57335700 - THE1C LTR MaLR -144 231 1 1674 196 6 3 chr4 126953341 126953652 -57335010 + AluJo SINE Alu 1 312 0 645 233 20 82 chr4 126954364 126954497 -57334165 - L1ME LINE L1 -5070 1000 860 2220 127 3 0 chr4 126954497 126954804 -57333858 - AluSp SINE Alu -5 308 1 645 233 20 82 chr4 126954804 126954975 -57333687 - L1ME LINE L1 -5210 860 715 871 289 46 17 chr4 126954975 126955321 -57333341 + L1MC4a LINE L1 7342 7697 -111 216 157 0 39 chr4 126955485 126955536 -57333126 + A-rich Low_complexity Low_complexity 4 52 0 2290 107 3 0 chr4 126956830 126957139 -57331523 + AluSp SINE Alu 1 310 -3 6015 20 9 0 chr4 126959262 126959963 -57328699 - L1PA2 LINE L1 -1 6154 5448 8981 66 4 140 chr4 126960063 126961632 -57327030 + SVA Other Other 13 1367 -19 207 0 0 0 chr4 126961641 126961664 -57326998 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 238 240 177 10 chr4 126961773 126961869 -57326793 - MLT1K LTR MaLR -63 525 414 332 72 58 0 chr4 126961920 126961989 -57326673 + (TA)n Simple_repeat Simple_repeat 1 73 0 21 36 0 0 chr4 126962149 126962177 -57326485 + AT_rich Low_complexity Low_complexity 1 28 0 2236 100 0 16 chr4 126962800 126963109 -57325553 + AluSx SINE Alu 1 304 -8 930 152 5 57 chr4 126963686 126963896 -57324766 - L1MA9 LINE L1 -3 6309 6111 1539 191 7 10 chr4 126964258 126964561 -57324101 + AluJo SINE Alu 1 302 -10 247 167 0 0 chr4 126964938 126964974 -57323688 + MLT1D LTR MaLR 1 36 -469 1486 180 4 4 chr4 126964998 126965254 -57323408 + MLT1D LTR MaLR 250 505 0 476 247 38 60 chr4 126965356 126965591 -57323071 + LTR37B LTR ERV1 239 468 0 212 272 61 67 chr4 126965591 126965771 -57322891 - L2 LINE L2 -1216 2098 1920 256 250 23 0 chr4 126967109 126967197 -57321465 - L1MC4 LINE L1 -1339 6703 6614 27 0 0 0 chr4 126967655 126967682 -57320980 + AT_rich Low_complexity Low_complexity 1 27 0 730 294 94 17 chr4 126967959 126968194 -57320468 - MIR SINE MIR -9 253 1 704 169 29 17 chr4 126968678 126968850 -57319812 - MER96B DNA MER1_type? -182 235 62 844 265 89 29 chr4 126968927 126969376 -57319286 + LTR1B LTR ERV1 33 508 -318 30 59 0 0 chr4 126970566 126970617 -57318045 + AT_rich Low_complexity Low_complexity 1 51 0 343 297 61 12 chr4 126970683 126970848 -57317814 - L1ME LINE L1 -437 5684 5512 582 297 137 20 chr4 126971220 126971806 -57316856 - L1ME LINE L1 -1083 5063 4410 181 340 90 35 chr4 126971935 126972079 -57316583 + MIR SINE MIR 59 210 -52 2109 140 0 0 chr4 126972406 126972706 -57315956 + AluSx SINE Alu 1 300 -12 189 0 0 0 chr4 126974922 126974943 -57313719 + (T)n Simple_repeat Simple_repeat 1 21 0 409 279 48 27 chr4 126975029 126975176 -57313486 + MIR SINE MIR 33 182 -80 1145 113 23 155 chr4 126975178 126975443 -57313219 + MER30 DNA MER1_type 1 230 0 6490 201 89 16 chr4 126977080 126978637 -57310025 + L1MC3 LINE L1 6116 7785 0 304 283 88 56 chr4 126978631 126978882 -57309780 + L1M4 LINE L1 3950 4208 -1938 * 231 167 42 0 chr4 126979070 126979118 -57309544 + (TATATG)n Simple_repeat Simple_repeat 4 53 0 561 207 18 0 chr4 126979837 126979948 -57308714 - L2 LINE L2 -7 3306 3194 227 380 18 18 chr4 126980328 126980499 -57308163 + L2 LINE L2 2925 3095 -177 233 294 103 44 chr4 126980683 126980819 -57307843 + MIR SINE MIR 73 216 -46 314 256 93 0 chr4 126983424 126983510 -57305152 + L1MC4 LINE L1 6610 6703 -1339 * 342 226 43 21 chr4 126983458 126983551 -57305111 - L1MC4 LINE L1 -1339 6703 6609 1502 185 6 64 chr4 126983552 126983881 -57304781 - AluJb SINE Alu 0 312 3 3980 138 71 6 chr4 126984228 126984932 -57303730 + L1MC1 LINE L1 5584 6333 0 4621 170 52 32 chr4 126985133 126986222 -57302440 - L1MA9 LINE L1 -39 6273 5158 1301 188 42 0 chr4 126986230 126986470 -57302192 - Tigger2 DNA MER2_type 0 2718 2469 3425 184 80 0 chr4 126986537 126987228 -57301434 - Tigger2 DNA MER2_type -1972 746 1 1429 116 13 31 chr4 126988278 126988502 -57300160 - AluSg/x SINE Alu -17 295 76 265 254 64 27 chr4 126988809 126988919 -57299743 - MIR SINE MIR -70 192 79 939 239 23 0 chr4 126989062 126989280 -57299382 + MER58A DNA MER1_type 1 223 -1 814 186 19 0 chr4 126990944 126991105 -57297557 + L1MA8 LINE L1 6067 6230 -61 409 316 138 48 chr4 126991625 126992080 -57296582 - L1MC4 LINE L1 -1995 5796 5301 403 242 11 0 chr4 126992259 126992354 -57296308 + FRAM SINE Alu 72 167 -9 356 304 50 73 chr4 126992481 126992741 -57295921 - L1MC4 LINE L1 -1131 4998 4745 424 277 54 22 chr4 126992891 126993115 -57295547 - L1MC4 LINE L1 -3246 2883 2653 395 318 59 54 chr4 126993386 126993773 -57294889 - L1MC4 LINE L1 -4134 2176 1788 204 174 0 65 chr4 126993941 126993956 -57294706 + A-rich Low_complexity Low_complexity 1 15 -28 1700 160 0 0 chr4 126993956 126994231 -57294431 + AluJb SINE Alu 38 312 0 204 174 0 65 chr4 126994231 126994261 -57294401 + A-rich Low_complexity Low_complexity 15 43 0 344 296 86 13 chr4 126994305 126994457 -57294205 + L1MCc LINE L1 110 272 -6151 390 282 82 53 chr4 126994765 126995172 -57293490 - L1MC4 LINE L1 -4862 1257 941 367 310 23 35 chr4 126995185 126995359 -57293303 + L2 LINE L2 1875 2046 -1268 24 0 0 0 chr4 126995511 126995535 -57293127 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4 126996384 126996406 -57292256 + AT_rich Low_complexity Low_complexity 1 22 0 884 159 33 0 chr4 126997915 126998066 -57290596 - LTR24 LTR ERV1 -30 437 282 21 0 0 0 chr4 126998802 126998823 -57289839 + AT_rich Low_complexity Low_complexity 1 21 0 244 316 82 41 chr4 126999322 126999518 -57289144 + MIR SINE MIR 8 211 -51 345 213 155 35 chr4 127000102 127000276 -57288386 + L1MCc LINE L1 1455 1649 -5282 363 285 13 33 chr4 127000363 127000514 -57288148 + L1MCc LINE L1 1862 2009 -4922 299 336 85 13 chr4 127000702 127000937 -57287725 + HAL1 LINE L1 1494 1745 -762 * 334 290 63 81 chr4 127000921 127001504 -57287158 + L1 LINE L1 3665 4237 -1909 31 0 0 0 chr4 127001612 127001643 -57287019 + AT_rich Low_complexity Low_complexity 1 31 0 1401 227 11 83 chr4 127001730 127002188 -57286474 + MLT1D LTR MaLR 1 425 -80 8113 108 15 5 chr4 127002191 127003470 -57285192 + L1P LINE L1 2391 3682 -2464 23 33 0 0 chr4 127004148 127004178 -57284484 + AT_rich Low_complexity Low_complexity 1 30 0 346 272 0 35 chr4 127004937 127005051 -57283611 + L1ME3 LINE L1 6044 6153 -9 327 325 83 25 chr4 127005101 127005258 -57283404 - L2 LINE L2 0 3272 3107 255 31 0 0 chr4 127005646 127005678 -57282984 + (TC)n Simple_repeat Simple_repeat 1 32 0 302 313 39 28 chr4 127005794 127005984 -57282678 - L1ME LINE L1 -468 5702 5508 191 61 30 0 chr4 127006001 127006034 -57282628 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 342 0 0 0 chr4 127006146 127006184 -57282478 + (TTG)n Simple_repeat Simple_repeat 1 38 0 4226 112 20 5 chr4 127006328 127006965 -57281697 + L1PA11 LINE L1 5527 6173 -1 752 282 70 7 chr4 127007149 127007433 -57281229 + LTR40b LTR ERVL 1 302 -160 2989 97 33 7 chr4 127007447 127007837 -57280825 + MLT2A1 LTR ERVL 1 404 -40 693 97 0 0 chr4 127007837 127007940 -57280722 + (TA)n Simple_repeat Simple_repeat 1 103 0 2989 97 33 7 chr4 127007940 127007971 -57280691 + MLT2A1 LTR ERVL 404 433 -11 23 78 0 0 chr4 127008853 127008904 -57279758 + AT_rich Low_complexity Low_complexity 1 51 0 506 243 32 36 chr4 127009908 127010101 -57278561 - L1ME1 LINE L1 -19 6147 6000 22735 154 24 26 chr4 127010568 127013173 -57275489 + L1MA3 LINE L1 12 2620 -5104 1938 136 31 0 chr4 127013173 127013460 -57275202 - AluSp SINE Alu -16 297 2 22735 154 24 26 chr4 127013460 127015005 -57273657 + L1MA3 LINE L1 2620 4166 -3558 1736 178 0 0 chr4 127015005 127015281 -57273381 + AluSx SINE Alu 1 276 -36 22735 154 24 26 chr4 127015281 127018855 -57269807 + L1MA3 LINE L1 4166 7724 0 22 70 0 0 chr4 127018857 127018900 -57269762 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr4 127019338 127019360 -57269302 + AT_rich Low_complexity Low_complexity 1 22 0 2003 152 0 0 chr4 127019846 127020148 -57268514 - AluSx SINE Alu -10 302 1 195 42 0 0 chr4 127020884 127020908 -57267754 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 39 0 0 0 chr4 127022202 127022241 -57266421 + AT_rich Low_complexity Low_complexity 1 39 0 4044 247 142 29 chr4 127022258 127023940 -57264722 - L1MD1 LINE L1 0 7808 5956 295 209 164 0 chr4 127024090 127024157 -57264505 + MLT1A1 LTR MaLR 1 78 -296 * 2600 232 52 99 chr4 127024146 127025292 -57263370 + MER52A LTR ERV1 663 1755 0 1685 178 17 3 chr4 127025333 127025620 -57263042 + MLT1A1 LTR MaLR 75 365 0 21 0 0 0 chr4 127025743 127025764 -57262898 + AT_rich Low_complexity Low_complexity 1 21 0 1615 250 131 11 chr4 127026079 127026627 -57262035 + MER90 LTR ERV1 1 614 0 2339 68 0 39 chr4 127026943 127027253 -57261409 + AluY SINE Alu 1 298 -13 299 320 105 39 chr4 127027781 127028265 -57260397 - HAL1b LINE L1 -735 613 98 21 0 0 0 chr4 127028629 127028650 -57260012 + AT_rich Low_complexity Low_complexity 1 21 0 296 308 128 73 chr4 127028952 127029280 -57259382 + MLT1L LTR MaLR 218 563 -52 640 225 0 8 chr4 127029488 127029608 -57259054 + FLAM_C SINE Alu 9 127 -16 1115 301 108 68 chr4 127030284 127031105 -57257557 - L2 LINE L2 -1236 2078 1225 694 116 0 0 chr4 127032125 127032237 -57256425 - L1MA7 LINE L1 -5 6286 6175 2026 146 3 3 chr4 127033904 127034205 -57254457 + AluSg SINE Alu 1 301 -9 21 0 0 0 chr4 127034816 127034837 -57253825 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 127035664 127035686 -57252976 + AT_rich Low_complexity Low_complexity 1 22 0 267 31 0 0 chr4 127036716 127036748 -57251914 + (TTA)n Simple_repeat Simple_repeat 2 33 0 206 392 14 35 chr4 127036984 127037127 -57251535 - MER5A DNA MER1_type -13 176 37 236 234 104 58 chr4 127038018 127038172 -57250490 - Charlie1 DNA MER1_type 0 2761 2601 2247 191 84 38 chr4 127038174 127038801 -57249861 + L1MD3 LINE L1 7322 7977 -18 1259 219 121 5 chr4 127038808 127039229 -57249433 - Charlie1 DNA MER1_type -39 2722 2253 4046 184 33 19 chr4 127039232 127040427 -57248235 + L1MB2 LINE L1 4885 6089 -82 1365 185 94 40 chr4 127040429 127040780 -57247882 - THE1C LTR MaLR 0 375 6 5992 161 31 13 chr4 127040785 127041807 -57246855 - THE1C-int LTR MaLR 0 1580 540 297 342 79 0 chr4 127041807 127041959 -57246703 - Charlie1 DNA MER1_type -1536 1225 1062 29502 34 2 1 chr4 127041963 127046326 -57242336 - L1PA3 LINE L1 0 6155 1789 292 302 35 0 chr4 127096602 127096688 -57191974 + L2 LINE L2 3184 3272 0 382 273 46 35 chr4 127096813 127096996 -57191666 + MIR SINE MIR 30 213 -49 360 0 0 0 chr4 127097428 127097468 -57191194 + (TA)n Simple_repeat Simple_repeat 2 41 0 1263 272 47 43 chr4 127097508 127098000 -57190662 - MER21B LTR ERV1 -149 714 221 1340 235 25 7 chr4 127098057 127098185 -57190477 + AluJo SINE Alu 1 125 -187 189 107 0 0 chr4 127098185 127098213 -57190449 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1340 235 25 7 chr4 127098213 127098361 -57190301 + AluJo SINE Alu 125 282 -30 378 0 0 0 chr4 127098367 127098409 -57190253 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 297 194 41 71 chr4 127098484 127098582 -57190080 - MER77 LTR ERV1 -409 196 102 1856 196 40 53 chr4 127099935 127100429 -57188233 - MLT1D LTR MaLR 0 505 18 200 337 0 60 chr4 127100506 127100589 -57188073 + MIR SINE MIR 59 136 -72 1585 109 5 0 chr4 127100678 127100899 -57187763 + AluSp SINE Alu 84 305 -8 24 0 0 0 chr4 127100902 127100926 -57187736 + AT_rich Low_complexity Low_complexity 1 24 0 1411 213 51 18 chr4 127101144 127101533 -57187129 + MER65A-int LTR ERV1 3411 3812 -1124 2769 258 46 16 chr4 127101550 127102361 -57186301 + MER65A-int LTR ERV1 4037 4871 0 2730 136 9 18 chr4 127102361 127102810 -57185852 + MER65A LTR ERV1 1 445 0 22 0 0 0 chr4 127104455 127104477 -57184185 + AT_rich Low_complexity Low_complexity 1 22 0 2350 98 0 0 chr4 127106110 127106415 -57182247 - AluSg SINE Alu -5 305 1 999 159 0 35 chr4 127106783 127106953 -57181709 + L1PA8A LINE L1 5967 6130 -1 220 315 0 14 chr4 127107261 127107334 -57181328 + GA-rich Low_complexity Low_complexity 3 74 0 1912 104 8 4 chr4 127107799 127108058 -57180604 - AluSq SINE Alu -15 298 39 43060 30 21 1 chr4 127108382 127114412 -57174250 + L1PA2 LINE L1 1 6152 -3 2027 125 20 16 chr4 127115241 127115545 -57173117 + AluSx SINE Alu 1 305 -7 487 287 0 24 chr4 127115638 127115802 -57172860 + MER97b DNA MER1_type? 20 179 -874 289 246 0 0 chr4 127115841 127115902 -57172760 - MER58 DNA MER1_type 0 2420 2360 1004 300 48 16 chr4 127115902 127116270 -57172392 + MLT1C LTR MaLR 1 390 0 955 197 78 12 chr4 127116270 127116514 -57172148 - MER58 DNA MER1_type -56 285 26 1465 228 32 24 chr4 127116540 127116913 -57171749 + MER97a DNA MER1_type? 198 573 -321 357 225 26 84 chr4 127117004 127117195 -57171467 + MER97c DNA MER1_type? 899 1078 -12 490 326 137 15 chr4 127119153 127119496 -57169166 - HAL1 LINE L1 -1301 1206 822 2223 103 3 0 chr4 127120180 127120472 -57168190 - AluSg SINE Alu -17 293 1 197 338 91 61 chr4 127120720 127120951 -57167711 + L2 LINE L2 2949 3186 -86 245 274 75 27 chr4 127121106 127121252 -57167410 - MER103 DNA DNA -7 159 7 189 0 0 0 chr4 127121781 127121802 -57166860 + (A)n Simple_repeat Simple_repeat 1 21 0 236 325 20 66 chr4 127122240 127122391 -57166271 + MIR3 SINE MIR 16 159 -49 1435 187 22 0 chr4 127122422 127122700 -57165962 + L1MB3 LINE L1 5893 6176 -7 21 0 0 0 chr4 127122700 127122721 -57165941 + AT_rich Low_complexity Low_complexity 1 21 0 907 196 0 13 chr4 127122860 127123018 -57165644 + FRAM SINE Alu 1 153 -23 1052 222 14 0 chr4 127123215 127123436 -57165226 - MER58A DNA MER1_type 0 224 1 23 0 0 0 chr4 127123577 127123600 -57165062 + AT_rich Low_complexity Low_complexity 1 23 0 1774 175 11 0 chr4 127124372 127124658 -57164004 + AluJo SINE Alu 1 289 -23 503 195 8 0 chr4 127124658 127124776 -57163886 + GA-rich Low_complexity Low_complexity 1 119 0 819 97 28 7 chr4 127124788 127124932 -57163730 + GA-rich Low_complexity Low_complexity 2 148 0 275 246 160 31 chr4 127127744 127127918 -57160744 - MIR SINE MIR -41 221 17 26 64 0 0 chr4 127128266 127128313 -57160349 + AT_rich Low_complexity Low_complexity 1 47 0 227 267 22 0 chr4 127128906 127128996 -57159666 + GA-rich Low_complexity Low_complexity 3 94 0 382 303 36 67 chr4 127129684 127129879 -57158783 + MER5A DNA MER1_type 1 189 0 325 45 23 0 chr4 127129950 127129994 -57158668 - MADE1 DNA Mariner -35 45 1 870 203 57 28 chr4 127130898 127131110 -57157552 + MER58A DNA MER1_type 3 220 -4 21 0 0 0 chr4 127131209 127131230 -57157432 + AT_rich Low_complexity Low_complexity 1 21 0 369 300 77 77 chr4 127132006 127132284 -57156378 - L2 LINE L2 -468 2846 2566 231 36 0 0 chr4 127132284 127132312 -57156350 + (AAATG)n Simple_repeat Simple_repeat 4 31 0 468 328 138 41 chr4 127132336 127132946 -57155716 - L2 LINE L2 -918 2396 1728 886 320 78 13 chr4 127133195 127134480 -57154182 + L1ME3A LINE L1 4416 5787 -377 493 332 59 46 chr4 127134509 127134898 -57153764 + L1ME3A LINE L1 5760 6153 -17 1043 111 94 0 chr4 127136483 127136654 -57152008 + L1PA16 LINE L1 5970 6156 -10 619 213 110 0 chr4 127136722 127136849 -57151813 + FRAM SINE Alu 1 137 -39 22 0 0 0 chr4 127136955 127136977 -57151685 + AT_rich Low_complexity Low_complexity 1 22 0 60 110 0 0 chr4 127137089 127137352 -57151310 + AT_rich Low_complexity Low_complexity 1 263 0 223 252 195 0 chr4 127137560 127137683 -57150979 - L2 LINE L2 -8 3305 3159 25 31 0 0 chr4 127137740 127137772 -57150890 + AT_rich Low_complexity Low_complexity 1 32 0 231 217 14 29 chr4 127139245 127139314 -57149348 + (TA)n Simple_repeat Simple_repeat 2 69 0 201 138 0 0 chr4 127141221 127141250 -57147412 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1576 166 57 18 chr4 127141834 127142117 -57146545 - AluJo SINE Alu -18 294 1 360 339 137 9 chr4 127142519 127142746 -57145916 - MIR SINE MIR -6 256 1 3535 17 0 0 chr4 127142949 127143355 -57145307 + L1P1 LINE L1 5417 5822 -333 29713 43 35 2 chr4 127143359 127147122 -57141540 + L1P LINE L1 2 3890 -2256 196 327 164 19 chr4 127147289 127147393 -57141269 - L2 LINE L2 -4 3309 3191 831 271 54 0 chr4 127147404 127147625 -57141037 - Charlie8 DNA MER1_type -2183 234 2 221 299 190 29 chr4 127148880 127149054 -57139608 + MIR SINE MIR 3 204 -58 283 286 20 41 chr4 127149091 127149189 -57139473 + MIR SINE MIR 65 160 -102 54 0 0 0 chr4 127150012 127150066 -57138596 + AT_rich Low_complexity Low_complexity 1 54 0 2011 104 50 0 chr4 127150765 127151043 -57137619 + AluSx SINE Alu 20 311 -1 275 122 0 0 chr4 127151075 127151124 -57137538 - L1MA9 LINE L1 0 6312 6264 32 106 0 0 chr4 127151414 127151537 -57137125 + AT_rich Low_complexity Low_complexity 1 123 0 28 0 0 0 chr4 127151629 127151657 -57137005 + AT_rich Low_complexity Low_complexity 1 28 0 1513 201 47 30 chr4 127152712 127153076 -57135586 + MLT1A2 LTR MaLR 4 373 -1 410 323 75 12 chr4 127153260 127153421 -57135241 - L2 LINE L2 -800 2514 2344 194 351 53 9 chr4 127153497 127153611 -57135051 - MER5A DNA MER1_type -35 154 36 204 40 0 0 chr4 127154912 127154937 -57133725 + (TTTTC)n Simple_repeat Simple_repeat 3 27 0 2470 44 0 13 chr4 127155766 127156064 -57132598 - AluY SINE Alu -15 296 3 474 120 0 0 chr4 127156520 127156595 -57132067 + (GGAA)n Simple_repeat Simple_repeat 2 76 0 2309 99 0 0 chr4 127156916 127157219 -57131443 - AluY SINE Alu -8 303 1 262 238 16 0 chr4 127158228 127158291 -57130371 + L2 LINE L2 3245 3308 -5 273 241 213 53 chr4 127158614 127158821 -57129841 - MIR SINE MIR 0 262 23 1152 235 29 50 chr4 127159029 127159408 -57129254 + MLT2C1 LTR ERVL 26 396 -1 696 203 89 25 chr4 127159483 127159685 -57128977 + MLT1J2 LTR MaLR 7 221 -229 6578 166 117 46 chr4 127159796 127161346 -57127316 + MER52A LTR ERV1 1 1755 0 242 247 27 0 chr4 127161346 127161418 -57127244 + MLT1J1 LTR MaLR 373 446 0 1191 158 13 4 chr4 127161963 127162191 -57126471 - L1MA6 LINE L1 -5 6295 6066 1876 112 4 11 chr4 127164927 127165196 -57123466 + AluSx SINE Alu 36 302 -10 405 215 8 16 chr4 127165207 127165328 -57123334 + GA-rich Low_complexity Low_complexity 2 121 0 297 0 0 0 chr4 127165429 127165462 -57123200 + (GGAA)n Simple_repeat Simple_repeat 2 34 0 203 329 13 0 chr4 127168072 127168148 -57120514 - MIR SINE MIR -128 134 58 21 0 0 0 chr4 127168803 127168824 -57119838 + AT_rich Low_complexity Low_complexity 1 21 0 227 369 12 12 chr4 127169013 127169097 -57119565 + L2 LINE L2 3170 3253 -19 181 271 12 12 chr4 127169097 127169182 -57119480 + GA-rich Low_complexity Low_complexity 4 88 0 23 54 0 0 chr4 127171671 127171708 -57116954 + AT_rich Low_complexity Low_complexity 1 37 0 257 0 30 0 chr4 127172594 127172627 -57116035 + (TC)n Simple_repeat Simple_repeat 1 34 0 1644 188 3 0 chr4 127173271 127173596 -57115066 - AluJb SINE Alu 0 326 1 773 222 28 60 chr4 127173598 127173814 -57114848 - MER20 DNA MER1_type -10 209 1 234 247 10 72 chr4 127173867 127173964 -57114698 + L2 LINE L2 3223 3313 0 233 301 251 6 chr4 127175099 127175262 -57113400 - MIR SINE MIR -11 251 49 24 32 0 0 chr4 127176763 127176794 -57111868 + AT_rich Low_complexity Low_complexity 1 31 0 216 323 21 10 chr4 127177718 127177814 -57110848 - L2 LINE L2 -1250 2064 1968 1636 342 87 23 chr4 127177828 127178901 -57109761 - L2 LINE L2 -335 2937 1799 947 276 75 17 chr4 127178902 127179394 -57109268 + MLT2E LTR ERVL 1 582 -46 1141 334 130 30 chr4 127179431 127180485 -57108177 - L2 LINE L2 -1512 1802 644 237 217 167 0 chr4 127180502 127180562 -57108100 - MER96 DNA MER1_type? -41 134 65 1337 305 34 11 chr4 127181829 127182272 -57106390 - LTR16B LTR ERVL -9 455 3 251 191 0 29 chr4 127182553 127182621 -57106041 - MER20B DNA MER1_type -28 755 690 598 193 138 6 chr4 127182622 127182803 -57105859 - MER20B DNA MER1_type -64 719 515 5055 147 62 33 chr4 127182941 127183918 -57104744 - Tigger1 DNA MER2_type 0 2418 1413 390 38 0 0 chr4 127183918 127183971 -57104691 + L1PA2 LINE L1 6103 6155 0 1278 244 35 144 chr4 127183971 127184350 -57104312 - L2 LINE L2 -359 2955 2625 287 87 22 0 chr4 127184350 127184396 -57104266 + MADE1 DNA Mariner 33 79 -1 1278 244 35 144 chr4 127184396 127184623 -57104039 - L2 LINE L2 -689 2625 2375 2157 125 0 6 chr4 127184688 127185001 -57103661 - AluSx SINE Alu -1 311 1 21 0 0 0 chr4 127185362 127185383 -57103279 + AT_rich Low_complexity Low_complexity 1 21 0 645 291 69 53 chr4 127185526 127185735 -57102927 - MER20B DNA MER1_type -362 421 204 2288 112 0 0 chr4 127185735 127186039 -57102623 + AluSg1 SINE Alu 1 304 -5 645 291 69 53 chr4 127186039 127186149 -57102513 - MER20B DNA MER1_type -579 204 97 1683 225 70 43 chr4 127186194 127186638 -57102024 - MER21B LTR ERV1 -48 815 360 1772 210 40 18 chr4 127186648 127187048 -57101614 + L1MC1 LINE L1 5908 6316 -17 405 319 93 44 chr4 127187428 127187792 -57100870 - L1ME LINE L1 -356 5765 5384 473 309 60 36 chr4 127188151 127188617 -57100045 - L1ME LINE L1 -1199 4947 4471 308 224 0 95 chr4 127188720 127188836 -57099826 - L1ME3A LINE L1 -89 6081 5977 243 220 92 64 chr4 127188867 127188976 -57099686 - Charlie8 DNA MER1_type -668 1749 1638 3781 221 50 49 chr4 127188976 127191094 -57097568 - L1 LINE L1 -3346 4219 2079 422 299 64 42 chr4 127191123 127191387 -57097275 - Charlie8 DNA MER1_type -777 1640 1371 670 296 62 31 chr4 127191502 127191890 -57096772 - MER93a LTR ERV1 -2 400 1 31 76 0 0 chr4 127192035 127192101 -57096561 + AT_rich Low_complexity Low_complexity 1 66 0 31 0 0 0 chr4 127192509 127192540 -57096122 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr4 127195276 127195298 -57093364 + AT_rich Low_complexity Low_complexity 1 22 0 1901 227 49 28 chr4 127196713 127197229 -57091433 + MLT2B3 LTR ERVL 1 481 -39 313 121 60 9 chr4 127197231 127197347 -57091315 + (TA)n Simple_repeat Simple_repeat 2 123 0 1994 144 16 0 chr4 127197438 127197744 -57090918 + AluSx SINE Alu 1 311 -1 197 286 0 0 chr4 127198214 127198256 -57090406 - L2 LINE L2 -211 3061 3020 23 33 0 0 chr4 127198367 127198397 -57090265 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr4 127198534 127198569 -57090093 + AT_rich Low_complexity Low_complexity 1 35 0 1464 196 29 16 chr4 127198748 127199054 -57089608 - AluJo SINE Alu 0 312 3 23 33 0 0 chr4 127200100 127200130 -57088532 + AT_rich Low_complexity Low_complexity 1 30 0 26 39 0 20 chr4 127200415 127200438 -57088224 + AT_rich Low_complexity Low_complexity 1 23 -27 2341 101 0 0 chr4 127200438 127200746 -57087916 - AluSx SINE Alu -4 308 1 26 39 0 20 chr4 127200746 127200773 -57087889 + AT_rich Low_complexity Low_complexity 23 50 0 21 57 0 0 chr4 127201109 127201144 -57087518 + AT_rich Low_complexity Low_complexity 1 35 0 230 294 63 63 chr4 127201550 127201693 -57086969 + MIR SINE MIR 32 174 -88 2224 83 0 26 chr4 127202675 127202977 -57085685 + AluY SINE Alu 9 302 -9 442 61 0 15 chr4 127203095 127203161 -57085501 - L1PA16 LINE L1 -4 6162 6098 4911 184 23 10 chr4 127203162 127204806 -57083856 - L1PA16 LINE L1 -105 6061 4383 180 77 0 0 chr4 127204806 127204832 -57083830 + (TG)n Simple_repeat Simple_repeat 2 27 0 4911 184 23 10 chr4 127204832 127205088 -57083574 - L1PA16 LINE L1 -1783 4383 4132 448 376 44 4 chr4 127206022 127206272 -57082390 - MIR SINE MIR -2 260 1 1577 175 54 43 chr4 127206944 127207315 -57081347 - THE1C LTR MaLR 0 375 1 9212 145 12 33 chr4 127207320 127208922 -57079740 - THE1C-int LTR MaLR -6 1574 6 1556 171 66 33 chr4 127208928 127209291 -57079371 - THE1C LTR MaLR 0 375 1 816 302 127 31 chr4 127209308 127209695 -57078967 - MLT2F LTR ERVL -239 424 1 195 302 35 23 chr4 127209698 127209784 -57078878 + L2 LINE L2 2594 2680 -634 1586 226 95 47 chr4 127210902 127210928 -57077734 + MLT1E3 LTR MaLR 139 162 -462 1873 135 43 0 chr4 127210928 127211209 -57077453 + AluSg SINE Alu 4 296 -14 1586 226 95 47 chr4 127211209 127211263 -57077399 + MLT1E3 LTR MaLR 162 212 -412 2144 137 0 0 chr4 127211263 127211570 -57077092 + AluSx SINE Alu 1 307 -5 1586 226 95 47 chr4 127211570 127211952 -57076710 + MLT1E3 LTR MaLR 212 624 0 1002 196 71 89 chr4 127212778 127212890 -57075772 - MER58B DNA MER1_type -2095 325 212 2088 109 0 17 chr4 127212890 127213192 -57075470 + AluSc SINE Alu 1 297 -12 1002 196 71 89 chr4 127213192 127213405 -57075257 - MER58B DNA MER1_type -2208 212 6 23 33 0 0 chr4 127214368 127214398 -57074264 + AT_rich Low_complexity Low_complexity 1 30 0 575 317 112 9 chr4 127215777 127216001 -57072661 + MIR SINE MIR 16 262 0 299 181 9 29 chr4 127216079 127216184 -57072478 + (TA)n Simple_repeat Simple_repeat 2 104 0 21 71 0 0 chr4 127216432 127216474 -57072188 + AT_rich Low_complexity Low_complexity 1 42 0 301 347 172 24 chr4 127216754 127217126 -57071536 + L2 LINE L2 2416 2842 -472 1001 156 137 24 chr4 127217314 127217525 -57071137 + MER1B DNA MER1_type 1 235 -62 1932 166 0 0 chr4 127218553 127218849 -57069813 - AluSx SINE Alu -14 298 3 1005 118 0 0 chr4 127218850 127218986 -57069676 - AluSq/x SINE Alu -177 136 1 274 327 40 13 chr4 127219614 127219764 -57068898 - L1MEd LINE L1 -5279 840 687 1371 207 90 0 chr4 127221393 127221683 -57066979 + L1PB4 LINE L1 5836 6151 -5 8110 230 40 20 chr4 127221696 127224264 -57064398 + L1MC1 LINE L1 2762 5430 -903 2397 116 36 0 chr4 127224264 127224626 -57064036 - THE1C LTR MaLR 0 375 1 8110 230 40 20 chr4 127224626 127225544 -57063118 + L1MC1 LINE L1 5430 6328 -5 372 202 140 9 chr4 127225728 127225842 -57062820 - MER103 DNA DNA -12 154 26 636 300 5 38 chr4 127225859 127226069 -57062593 - MIR SINE MIR -15 247 45 21 0 0 0 chr4 127226237 127226258 -57062404 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 127228018 127228042 -57060620 + AT_rich Low_complexity Low_complexity 1 24 0 432 289 59 84 chr4 127229360 127229682 -57058980 + L1MEd LINE L1 888 1201 -4918 14725 93 26 2 chr4 127229795 127232692 -57055970 + L1PA7 LINE L1 3215 6150 -4 4889 84 35 137 chr4 127233101 127234021 -57054641 + LTR12 LTR ERV1 1 826 0 571 125 29 10 chr4 127234811 127234915 -57053747 + L1MA5A LINE L1 6189 6294 -3 496 309 57 19 chr4 127234972 127235361 -57053301 - L1ME LINE L1 -302 5819 5411 5548 116 7 0 chr4 127235755 127236603 -57052059 - L1PA8A LINE L1 -938 5208 4355 2582 91 6 0 chr4 127236601 127237007 -57051655 + L1PA8A LINE L1 5195 5602 -529 * 12162 23 42 0 chr4 127237107 127239263 -57049399 + L1PA2 LINE L1 3964 6155 0 2775 38 3 3 chr4 127239263 127239597 -57049065 + L1PA3 LINE L1 5814 6152 -3 2351 70 0 3 chr4 127239832 127240119 -57048543 + AluY SINE Alu 1 286 -25 2171 159 37 8 chr4 127240180 127240582 -57048080 - MLT2D LTR ERVL 0 414 1 640 156 0 0 chr4 127240813 127240922 -57047740 - HY1 scRNA scRNA -2 110 2 1242 210 189 5 chr4 127242286 127242642 -57046020 + MLT1D LTR MaLR 10 421 -46 213 270 81 0 chr4 127242646 127242720 -57045942 - MIR SINE MIR -32 230 151 632 288 19 6 chr4 127242721 127242881 -57045781 - MIR SINE MIR -62 200 39 542 314 43 37 chr4 127242945 127243244 -57045418 - LTR16C LTR ERVL 0 491 191 21 0 0 0 chr4 127244284 127244305 -57044357 + AT_rich Low_complexity Low_complexity 1 21 0 1246 257 69 24 chr4 127245503 127245880 -57042782 + MSTD LTR MaLR 3 396 0 442 243 63 9 chr4 127247301 127247412 -57041250 + MER69 DNA AcHobo 8 124 -1102 31 0 0 0 chr4 127247537 127247568 -57041094 + AT_rich Low_complexity Low_complexity 1 31 0 1354 236 7 4 chr4 127247568 127247844 -57040818 - AluJb SINE Alu -35 277 1 235 122 41 0 chr4 127248075 127248124 -57040538 + (TA)n Simple_repeat Simple_repeat 1 51 0 824 216 88 40 chr4 127248137 127248262 -57040400 + MER69 DNA AcHobo 2156 2274 -252 216 0 0 0 chr4 127248262 127248286 -57040376 + (TA)n Simple_repeat Simple_repeat 1 24 0 824 216 88 40 chr4 127248286 127248512 -57040150 + MER69 DNA AcHobo 2274 2524 -2 17826 196 21 20 chr4 127248552 127252781 -57035881 + L1PA16 LINE L1 2 4236 -2633 1735 126 0 30 chr4 127252781 127253104 -57035558 + AluSg SINE Alu 27 341 0 17826 196 21 20 chr4 127253104 127255686 -57032976 + L1PA16 LINE L1 4236 6815 -54 26 0 0 0 chr4 127256077 127256103 -57032559 + AT_rich Low_complexity Low_complexity 1 26 0 862 127 102 0 chr4 127256433 127256590 -57032072 - L1PBa LINE L1 -4440 2423 2251 363 202 0 26 chr4 127256597 127256692 -57031970 + L1 LINE L1 3046 3139 -3007 207 0 0 0 chr4 127256692 127256715 -57031947 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 363 202 0 26 chr4 127256715 127256733 -57031929 + L1 LINE L1 3139 3156 -2990 378 0 0 0 chr4 127258361 127258403 -57030259 + (CA)n Simple_repeat Simple_repeat 2 43 0 264 346 71 31 chr4 127259273 127259400 -57029262 + L2 LINE L2 3180 3311 -2 378 42 0 0 chr4 127259790 127259838 -57028824 + (CA)n Simple_repeat Simple_repeat 2 49 0 737 198 189 22 chr4 127260460 127260682 -57027980 + MIR SINE MIR 2 260 -2 187 335 120 20 chr4 127263097 127263297 -57025365 + L2 LINE L2 2372 2591 -723 218 209 0 0 chr4 127264406 127264449 -57024213 + L2 LINE L2 3271 3313 0 293 180 49 16 chr4 127264687 127264748 -57023914 - MIR3 SINE MIR -2 206 144 372 280 84 9 chr4 127264923 127265030 -57023632 - MIR SINE MIR -73 135 21 644 165 71 0 chr4 127266523 127266693 -57021969 - MER53 DNA DNA -3 186 5 317 256 0 12 chr4 127267453 127267535 -57021127 - L1MC4 LINE L1 -1350 6692 6612 848 333 62 42 chr4 127267984 127268417 -57020245 + L1M3a LINE L1 11 452 -5503 9750 213 36 40 chr4 127268846 127271744 -57016918 + L1M3f LINE L1 539 3399 -2929 2090 141 3 0 chr4 127271744 127272049 -57016613 + AluSx SINE Alu 1 306 -6 9750 213 36 40 chr4 127272049 127273144 -57015518 + L1M3f LINE L1 3399 4496 -1832 1278 214 21 0 chr4 127273406 127273640 -57015022 - MER8 DNA MER2_type 0 239 1 2682 161 97 4 chr4 127273829 127274333 -57014329 + LTR64 LTR ERVK 8 558 0 2457 168 67 5 chr4 127274791 127275238 -57013424 - MER44D DNA MER2_type 0 605 76 32070 34 14 4 chr4 127275244 127281287 -57007375 - L1PA3 LINE L1 -1 6154 1 527 202 0 0 chr4 127281475 127281564 -57007098 - MER44D DNA MER2_type -616 89 1 28 86 0 0 chr4 127284691 127284761 -57003901 + AT_rich Low_complexity Low_complexity 1 70 0 336 236 48 62 chr4 127285236 127285389 -57003273 - MIR SINE MIR -40 168 15 1077 195 66 60 chr4 127286872 127286973 -57001689 + L1MD2 LINE L1 6038 6137 -222 243 0 0 0 chr4 127286973 127287000 -57001662 + (CA)n Simple_repeat Simple_repeat 2 28 0 1077 195 66 60 chr4 127287000 127287216 -57001446 + L1MD2 LINE L1 6137 6357 -2 252 104 21 42 chr4 127288500 127288548 -57000114 - MLT2A2 LTR ERVL -8 445 399 1465 168 66 80 chr4 127288612 127289127 -56999535 - MLT2A2 LTR ERVL -35 519 1 379 316 214 61 chr4 127289950 127290342 -56998320 - L3 LINE CR1 -26 1551 1100 2485 337 50 45 chr4 127290948 127291196 -56997466 - ERVL LTR ERVL -1898 3866 3621 234 0 0 0 chr4 127291196 127291222 -56997440 + (GGAGA)n Simple_repeat Simple_repeat 5 30 0 2485 337 50 45 chr4 127291222 127291901 -56996761 - ERVL LTR ERVL -2143 3621 2935 629 253 81 0 chr4 127291947 127292133 -56996529 + MER58B DNA MER1_type 141 341 0 22 0 0 0 chr4 127292345 127292367 -56996295 + AT_rich Low_complexity Low_complexity 1 22 0 2339 102 7 0 chr4 127292485 127292789 -56995873 + AluSp SINE Alu 1 306 -7 361 221 65 78 chr4 127292792 127292946 -56995716 + L1ME4a LINE L1 5756 5907 -214 31 0 0 0 chr4 127293112 127293143 -56995519 + AT_rich Low_complexity Low_complexity 1 31 0 254 340 73 39 chr4 127293143 127293402 -56995260 - L3 LINE CR1 -673 904 637 314 353 145 7 chr4 127293516 127293805 -56994857 + L2 LINE L2 2043 2371 -943 659 240 77 45 chr4 127293949 127294195 -56994467 + MIR SINE MIR 9 262 0 209 200 25 0 chr4 127295441 127295481 -56993181 + (TCTG)n Simple_repeat Simple_repeat 3 43 0 339 283 20 10 chr4 127295571 127295670 -56992992 + MIR SINE MIR 2 101 -161 766 167 364 0 chr4 127296464 127296703 -56991959 - LTR50 LTR ERVL 0 795 470 * 870 223 145 51 chr4 127296687 127296859 -56991803 - LTR50 LTR ERVL -427 368 213 443 45 0 0 chr4 127296859 127296925 -56991737 - L1MA7 LINE L1 0 6291 6226 870 223 145 51 chr4 127296925 127297084 -56991578 - LTR50 LTR ERVL -582 213 6 300 222 28 0 chr4 127297092 127297164 -56991498 - L1MA6 LINE L1 -34 6266 6193 28 29 0 0 chr4 127297164 127297199 -56991463 + AT_rich Low_complexity Low_complexity 1 35 0 2224 121 0 0 chr4 127297227 127297533 -56991129 - AluSc SINE Alu -3 306 1 308 217 17 58 chr4 127297904 127298024 -56990638 + CT-rich Low_complexity Low_complexity 6 120 0 597 196 9 0 chr4 127299176 127299283 -56989379 + MER45A DNA AcHobo 57 164 -14 23 0 0 0 chr4 127299990 127300013 -56988649 + AT_rich Low_complexity Low_complexity 1 23 0 2113 204 48 120 chr4 127301735 127302611 -56986051 - L1MC4 LINE L1 -1 8041 7229 2024 120 21 14 chr4 127302623 127302914 -56985748 - MER1B DNA MER1_type 0 339 47 1022 235 83 19 chr4 127302987 127303311 -56985351 - L1MC4 LINE L1 -826 7216 6872 2909 237 56 21 chr4 127303318 127304551 -56984111 - L1ME1 LINE L1 -84 6082 4719 2289 238 44 59 chr4 127304553 127305543 -56983119 - L1ME1 LINE L1 -1649 4497 3522 21 0 0 0 chr4 127307727 127307748 -56980914 + AT_rich Low_complexity Low_complexity 1 21 0 319 257 29 4 chr4 127307764 127307889 -56980773 + MIR3 SINE MIR 74 201 -7 253 285 37 20 chr4 127309316 127309456 -56979206 - MIR SINE MIR -29 233 23 2197 128 0 0 chr4 127309844 127310148 -56978514 + AluSc SINE Alu 3 306 -3 640 239 18 24 chr4 127311623 127311790 -56976872 + MIR SINE MIR 32 197 -65 240 345 0 24 chr4 127311820 127311904 -56976758 - MIR SINE MIR -109 99 18 245 333 26 0 chr4 127315264 127315342 -56973320 - MIR3 SINE MIR -6 202 123 230 193 18 0 chr4 127315480 127315537 -56973125 + (TGGA)n Simple_repeat Simple_repeat 4 61 0 470 295 0 0 chr4 127315579 127315701 -56972961 + MIR SINE MIR 78 199 -63 410 292 10 64 chr4 127316031 127316233 -56972429 + MIR SINE MIR 23 213 -49 371 267 13 17 chr4 127316565 127316729 -56971933 - MIR SINE MIR -19 243 33 256 344 0 0 chr4 127316744 127316808 -56971854 - MIR SINE MIR -186 76 13 21 0 0 0 chr4 127317987 127318008 -56970654 + AT_rich Low_complexity Low_complexity 1 21 0 223 333 23 35 chr4 127318418 127318505 -56970157 + MIR SINE MIR 67 152 -56 1894 118 15 4 chr4 127319595 127319865 -56968797 + AluSq SINE Alu 22 294 -19 23 0 0 0 chr4 127319865 127319888 -56968774 + AT_rich Low_complexity Low_complexity 1 23 0 3370 139 19 4 chr4 127319982 127320501 -56968161 - MER1A DNA MER1_type 0 527 1 373 297 55 55 chr4 127320589 127320754 -56967908 - MIR SINE MIR -71 191 27 21 0 0 0 chr4 127321230 127321251 -56967411 + AT_rich Low_complexity Low_complexity 1 21 0 822 226 6 11 chr4 127321287 127321464 -56967198 + FRAM SINE Alu 1 176 0 340 338 54 36 chr4 127321517 127321739 -56966923 - MIR SINE MIR 0 262 37 187 211 0 26 chr4 127321767 127321805 -56966857 + MIR SINE MIR 38 74 -134 459 0 0 0 chr4 127322538 127322589 -56966073 + (TG)n Simple_repeat Simple_repeat 1 51 0 1993 135 0 3 chr4 127323431 127323720 -56964942 + AluSx SINE Alu 1 288 -24 346 291 212 20 chr4 127325147 127325350 -56963312 + MIR SINE MIR 5 246 -16 17122 148 34 0 chr4 127325480 127329307 -56959355 + L1PA11 LINE L1 2275 6173 -1 1304 239 104 5 chr4 127329313 127329990 -56958672 + L1MD2 LINE L1 5383 6161 -5 810 281 77 12 chr4 127330758 127331004 -56957658 - MIR SINE MIR 0 262 1 184 400 0 0 chr4 127331051 127331116 -56957546 - L2 LINE L2 -12 3301 3237 2192 165 59 15 chr4 127331222 127331628 -56957034 - MSTB LTR MaLR -2 424 1 263 347 10 20 chr4 127331628 127331726 -56956936 + MIR3 SINE MIR 77 173 -35 233 246 0 16 chr4 127332025 127332086 -56956576 + GA-rich Low_complexity Low_complexity 1 60 0 252 0 0 0 chr4 127332690 127332718 -56955944 + (TG)n Simple_repeat Simple_repeat 2 29 0 204 356 17 43 chr4 127332812 127332927 -56955735 - MIR SINE MIR -85 177 66 195 42 0 0 chr4 127333082 127333106 -56955556 + (TC)n Simple_repeat Simple_repeat 2 25 0 23 54 0 0 chr4 127333288 127333325 -56955337 + AT_rich Low_complexity Low_complexity 1 37 0 1807 155 0 17 chr4 127334160 127334451 -56954211 - AluJb SINE Alu -26 286 1 299 137 0 20 chr4 127335482 127335533 -56953129 - MADE1 DNA Mariner 0 80 31 454 306 56 12 chr4 127335877 127336037 -56952625 - MIR SINE MIR -76 186 20 607 255 143 13 chr4 127336104 127336481 -56952181 + L1ME4a LINE L1 5681 6106 -15 225 152 0 81 chr4 127336640 127336739 -56951923 + (TTTA)n Simple_repeat Simple_repeat 3 93 0 315 0 0 0 chr4 127337449 127337484 -56951178 + (TG)n Simple_repeat Simple_repeat 2 36 0 215 263 84 21 chr4 127339928 127340023 -56948639 - MIR SINE MIR 0 262 162 285 346 39 8 chr4 127340438 127340565 -56948097 + MIR3 SINE MIR 69 199 -9 2707 205 56 2 chr4 127340873 127341376 -56947286 + L1PA12 LINE L1 641 1170 -6411 25 0 0 0 chr4 127342590 127342615 -56946047 + AT_rich Low_complexity Low_complexity 1 25 0 2129 106 3 0 chr4 127342619 127342938 -56945724 + AluSp SINE Alu 1 320 0 975 296 38 20 chr4 127343329 127343673 -56944989 + MLT1I LTR MaLR 58 407 -2 217 224 0 40 chr4 127345346 127345422 -56943240 + T-rich Low_complexity Low_complexity 4 76 0 22 0 0 0 chr4 127345483 127345505 -56943157 + AT_rich Low_complexity Low_complexity 1 22 0 313 306 9 9 chr4 127345540 127345651 -56943011 - HAL1 LINE L1 -914 1593 1483 12629 110 6 28 chr4 127345670 127348186 -56940476 - L1P3 LINE L1 -3942 2519 9 450 118 0 26 chr4 127348190 127348266 -56940396 - L1MC1 LINE L1 -482 5851 5778 4655 59 2 0 chr4 127348266 127348853 -56939809 + L1PA7 LINE L1 5560 6150 -4 456 307 125 50 chr4 127348926 127349206 -56939456 - HAL1 LINE L1 -1128 1379 1055 2424 93 0 0 chr4 127349206 127349516 -56939146 + AluSp SINE Alu 1 310 -3 456 307 125 50 chr4 127349516 127349659 -56939003 - HAL1 LINE L1 -1452 1055 924 30 0 0 0 chr4 127350214 127350244 -56938418 + AT_rich Low_complexity Low_complexity 1 30 0 193 379 11 28 chr4 127354606 127354788 -56933874 + L2 LINE L2 2601 2779 -535 2020 147 3 0 chr4 127354792 127355085 -56933577 - AluSx SINE Alu -18 294 1 340 313 137 11 chr4 127355271 127355453 -56933209 - MLT1I LTR MaLR -204 205 1 1078 257 17 0 chr4 127355492 127355842 -56932820 + L1M4 LINE L1 4408 4763 -1383 2534 105 19 8 chr4 127355845 127356216 -56932446 + THE1C LTR MaLR 1 375 0 9950 121 33 19 chr4 127356216 127357774 -56930888 + THE1C-int LTR MaLR 1 1580 0 1630 164 25 18 chr4 127357774 127358055 -56930607 + THE1C LTR MaLR 1 283 -92 377 209 135 25 chr4 127358212 127358375 -56930287 + L1M4 LINE L1 5217 5397 -749 * 5038 226 48 48 chr4 127358359 127360285 -56928377 + L1PA12 LINE L1 1021 3750 -3834 11696 196 29 15 chr4 127360385 127365758 -56922904 + L1PA13 LINE L1 1268 7597 -4 276 287 20 0 chr4 127366310 127366411 -56922251 + (TA)n Simple_repeat Simple_repeat 1 103 0 507 149 0 0 chr4 127367046 127367120 -56921542 + MSTA LTR MaLR 1 74 -354 * 1127 165 72 0 chr4 127367118 127367312 -56921350 + MSTA LTR MaLR 221 428 0 9304 167 18 13 chr4 127367312 127368955 -56919707 + MSTA-int LTR MaLR 1 1651 0 2156 150 114 5 chr4 127368955 127369341 -56919321 + MSTA LTR MaLR 1 428 0 1811 261 29 33 chr4 127369592 127370075 -56918587 + MLT1G1 LTR MaLR 1 481 -114 559 342 72 0 chr4 127371016 127371238 -56917424 - HERV16 LTR ERVL -2197 2799 2562 192 261 152 22 chr4 127371240 127371332 -56917330 + MIR SINE MIR 84 187 -75 272 282 174 41 chr4 127372105 127372300 -56916362 + MIR SINE MIR 42 262 0 557 277 0 34 chr4 127373825 127373973 -56914689 + MIR SINE MIR 14 156 -106 1120 201 18 18 chr4 127375747 127375966 -56912696 + MER20 DNA MER1_type 1 219 0 1605 174 17 14 chr4 127376299 127376587 -56912075 - AluJo SINE Alu -14 298 10 5614 90 7 3 chr4 127377488 127378246 -56910416 - MER11C LTR ERVK 0 1071 311 25 0 0 0 chr4 127378625 127378650 -56910012 + AT_rich Low_complexity Low_complexity 1 25 0 1448 219 44 22 chr4 127378922 127379282 -56909380 + MLT1A2 LTR MaLR 1 368 -6 2181 113 7 0 chr4 127379386 127379679 -56908983 + AluSq SINE Alu 1 295 -18 267 164 0 0 chr4 127380229 127380290 -56908372 + CT-rich Low_complexity Low_complexity 2 62 0 22 56 0 0 chr4 127380480 127380516 -56908146 + AT_rich Low_complexity Low_complexity 1 36 0 510 353 47 14 chr4 127380566 127380926 -56907736 - L1M4 LINE L1 -1542 4604 4233 303 308 13 0 chr4 127381120 127381198 -56907464 + MER58A DNA MER1_type 1 79 -28 6034 11 2 0 chr4 127381285 127382059 -56906603 + L1PA3 LINE L1 5402 6176 0 189 300 0 0 chr4 127382437 127382497 -56906165 + MIR SINE MIR 6 65 -197 294 210 20 90 chr4 127382622 127382722 -56905940 + AluS SINE Alu 13 96 -207 2001 112 0 14 chr4 127384265 127384541 -56904121 + AluSx SINE Alu 22 293 -19 212 333 159 42 chr4 127385395 127385584 -56903078 + L2 LINE L2 2967 3177 -95 752 270 112 48 chr4 127385683 127386779 -56901883 - L1MC/D LINE L1 -743 5403 4382 2188 124 7 0 chr4 127386782 127387080 -56901582 - AluSx SINE Alu -12 300 1 3948 151 113 11 chr4 127387155 127387904 -56900758 - LTR1B LTR ERV1 0 826 1 346 174 54 33 chr4 127389110 127389202 -56899460 - MER65B LTR ERV1 -433 98 5 2414 86 0 0 chr4 127389508 127389810 -56898852 - AluSc SINE Alu -7 302 1 1219 119 21 10 chr4 127389864 127390057 -56898605 - L1PA16 LINE L1 -2 6164 5970 1194 138 20 10 chr4 127390061 127390264 -56898398 + MER50 LTR ERV1 530 734 0 256 240 31 31 chr4 127390455 127390584 -56898078 + L1ME LINE L1 5271 5399 -785 271 332 84 0 chr4 127390763 127390953 -56897709 + L1ME LINE L1 5604 5809 -312 966 148 103 81 chr4 127390970 127391241 -56897421 - MER34C LTR ERV1 0 585 309 672 202 17 0 chr4 127391248 127391367 -56897295 + FLAM_C SINE Alu 8 128 -15 1714 132 27 14 chr4 127391367 127391663 -56896999 - MER34C LTR ERV1 -281 304 5 22 0 0 0 chr4 127392561 127392583 -56896079 + AT_rich Low_complexity Low_complexity 1 22 0 525 151 0 19 chr4 127392695 127392801 -56895861 + L1MB3 LINE L1 6080 6183 0 3813 164 19 46 chr4 127393250 127393348 -56895314 - L1M LINE L1 -743 5403 5304 2122 92 48 14 chr4 127393348 127393640 -56895022 - AluSx SINE Alu -10 302 1 3813 164 19 46 chr4 127393640 127394442 -56894220 - L1M LINE L1 -842 5304 4538 3943 164 37 29 chr4 127394442 127395274 -56893388 + L1MA10 LINE L1 5440 6278 -56 2198 151 118 0 chr4 127395347 127395730 -56892932 - MSTC LTR MaLR 0 428 1 2441 165 30 48 chr4 127396055 127396619 -56892043 + MER34B LTR ERV1 12 565 0 2102 180 13 13 chr4 127396737 127397121 -56891541 + MLT1B LTR MaLR 1 384 -6 206 270 14 27 chr4 127397703 127397777 -56890885 + CT-rich Low_complexity Low_complexity 2 74 0 21 57 0 0 chr4 127398130 127398165 -56890497 + AT_rich Low_complexity Low_complexity 1 35 0 1622 230 38 5 chr4 127398668 127399038 -56889624 + MLT1E2 LTR MaLR 245 626 0 267 326 104 0 chr4 127399089 127399224 -56889438 + MIR SINE MIR 49 197 -65 1358 116 23 0 chr4 127399240 127399455 -56889207 + L1PA14 LINE L1 5938 6157 -4 4405 62 10 0 chr4 127399610 127399635 -56889027 - LTR10C LTR ERV1 0 591 568 11190 28 0 0 chr4 127399635 127401728 -56886934 + L1PA3 LINE L1 4063 6154 -1 4405 62 10 0 chr4 127401728 127402287 -56886375 - LTR10C LTR ERV1 -23 568 1 1952 177 57 9 chr4 127402287 127402726 -56885936 + Charlie1b DNA MER1_type 46 505 -18 1193 210 53 27 chr4 127404402 127404918 -56883744 + MER34B LTR ERV1 1 565 0 691 144 7 72 chr4 127404918 127405071 -56883591 + MER93b LTR ERV1 20 162 -211 1274 189 15 4 chr4 127405071 127405336 -56883326 + MER93b LTR ERV1 106 373 0 285 208 0 94 chr4 127406781 127406877 -56881785 + HsTC2 DNA Tc2 1 87 -1811 784 272 46 9 chr4 127406894 127407111 -56881551 - MIR SINE MIR -30 232 8 472 260 48 132 chr4 127407137 127407305 -56881357 - MIR SINE MIR -6 256 118 1965 149 0 7 chr4 127407305 127407593 -56881069 + AluJo SINE Alu 1 286 -26 472 260 48 132 chr4 127407593 127407697 -56880965 - MIR SINE MIR -144 118 7 2156 167 48 19 chr4 127408242 127408662 -56880000 - MSTB1 LTR MaLR 0 432 1 369 248 92 13 chr4 127408931 127409084 -56879578 - MER103 DNA DNA -1 165 1 814 300 119 16 chr4 127409158 127409605 -56879057 + MLT1J LTR MaLR 1 493 -18 2239 128 0 0 chr4 127411138 127411443 -56877219 - AluSx SINE Alu -7 305 1 316 353 75 29 chr4 127413249 127413422 -56875240 - L2 LINE L2 -2 3270 3090 1015 229 39 80 chr4 127413443 127414013 -56874649 + MER34 LTR ERV1 1 585 0 386 222 33 16 chr4 127414162 127414324 -56874338 - LTR48 LTR ERV1 -5 751 380 347 158 0 0 chr4 127414467 127414524 -56874138 - MER34C LTR ERV1 -492 93 37 450 179 113 24 chr4 127414842 127415010 -56873652 - Charlie1b DNA MER1_type -5 518 336 2018 93 31 3 chr4 127415010 127415359 -56873303 + LTR7 LTR ERV1 1 448 -2 18540 93 30 16 chr4 127415361 127418309 -56870353 + HERVH LTR ERV1 1 2987 -4726 916 115 7 0 chr4 127418303 127418451 -56870211 + HERVH LTR ERV1 3140 3288 -4425 * 3203 117 0 6 chr4 127418443 127418948 -56869714 + HERVH LTR ERV1 3492 3993 -3720 834 158 0 0 chr4 127418965 127419127 -56869535 + HERVH LTR ERV1 3995 4393 -3326 6725 117 0 1 chr4 127419127 127420135 -56868527 + HERVH LTR ERV1 4143 5149 -2564 1315 121 23 0 chr4 127420136 127420351 -56868311 + HERVH LTR ERV1 5600 5819 -1894 2268 96 50 13 chr4 127420351 127420727 -56867935 + HERVH LTR ERV1 7324 7713 0 2049 79 31 3 chr4 127420727 127421076 -56867586 + LTR7 LTR ERV1 1 448 -2 1204 177 153 0 chr4 127421084 127421372 -56867290 - Charlie1b DNA MER1_type -191 332 1 191 339 0 0 chr4 127421463 127421519 -56867143 - L2 LINE L2 -830 2484 2429 3625 202 42 88 chr4 127421786 127423531 -56865131 - L1MDb LINE L1 -4091 2315 669 347 352 0 19 chr4 127423742 127423850 -56864812 - L1MDb LINE L1 -6142 267 162 291 307 0 13 chr4 127423924 127423999 -56864663 + L2 LINE L2 3199 3272 0 188 343 0 0 chr4 127424037 127424104 -56864558 - L2 LINE L2 -560 2754 2688 334 169 0 0 chr4 127424307 127424372 -56864290 + MER89 LTR ERV1 1 65 -494 1502 206 31 22 chr4 127424373 127424728 -56863934 + MER89 LTR ERV1 180 537 -22 1271 251 25 19 chr4 127425504 127425863 -56862799 + MLT2E LTR ERVL 62 422 -206 2041 135 7 3 chr4 127426058 127426355 -56862307 - AluSq SINE Alu -15 298 1 23 68 0 0 chr4 127426365 127426409 -56862253 + AT_rich Low_complexity Low_complexity 1 44 0 538 186 8 0 chr4 127427368 127427486 -56861176 + L1MB4 LINE L1 6061 6179 -1 21 0 0 0 chr4 127428174 127428195 -56860467 + AT_rich Low_complexity Low_complexity 1 21 0 372 303 43 31 chr4 127429159 127429321 -56859341 - MIR SINE MIR -79 183 20 24 0 0 0 chr4 127430224 127430248 -56858414 + AT_rich Low_complexity Low_complexity 1 24 0 590 261 137 89 chr4 127430491 127431024 -56857638 + MLT1G LTR MaLR 8 564 -3 502 297 37 34 chr4 127431165 127431461 -56857201 + MLT1G-int LTR MaLR 245 541 -830 526 218 14 49 chr4 127431630 127431772 -56856890 + MLT1F LTR MaLR 400 536 -6 181 227 13 27 chr4 127432446 127432521 -56856141 + CT-rich Low_complexity Low_complexity 6 79 0 256 254 0 0 chr4 127432850 127432905 -56855757 - MER63A DNA MER1_type 0 210 156 375 73 0 229 chr4 127433981 127434077 -56854585 + MADE1 DNA Mariner 2 75 -5 1718 132 50 59 chr4 127434132 127434496 -56854166 + MSTB LTR MaLR 1 426 0 332 234 25 114 chr4 127434508 127434583 -56854079 - MIR SINE MIR 0 262 207 4906 94 139 0 chr4 127434583 127435308 -56853354 + LTR12 LTR ERV1 1 826 0 332 234 25 114 chr4 127435308 127435390 -56853272 - MIR SINE MIR -55 207 119 443 228 132 29 chr4 127435790 127435995 -56852667 + L1P5 LINE L1 5209 5430 -721 387 245 0 0 chr4 127435998 127436092 -56852570 - HAL1 LINE L1 -298 2209 2116 2422 193 25 24 chr4 127436136 127436861 -56851801 - L1ME1 LINE L1 -5 6161 5395 283 220 51 0 chr4 127436881 127436999 -56851663 + (TA)n Simple_repeat Simple_repeat 2 125 0 1626 203 54 20 chr4 127437003 127437489 -56851173 - L1ME1 LINE L1 -751 5395 4931 1365 189 97 53 chr4 127437551 127438006 -56850656 + MER39 LTR ERV1 232 706 -1 660 198 44 16 chr4 127438007 127438189 -56850473 - L1ME1 LINE L1 -1213 4933 4747 704 227 90 13 chr4 127438720 127439013 -56849649 - L1ME1 LINE L1 -1387 4759 4411 3161 147 10 2 chr4 127439023 127439539 -56849123 - L1MC2 LINE L1 -458 5955 5436 343 155 124 72 chr4 127439536 127439633 -56849029 - L1MC2 LINE L1 -3392 2823 2722 * 658 207 7 21 chr4 127439629 127439774 -56848888 - L1MC2 LINE L1 -6216 180 38 1780 257 40 40 chr4 127439776 127440460 -56848202 - HAL1 LINE L1 -427 2080 1397 1464 258 131 68 chr4 127440497 127441505 -56847157 - HAL1 LINE L1 -1410 1097 26 249 208 215 39 chr4 127441513 127441643 -56847019 - L1ME3A LINE L1 -2 6168 6016 646 42 0 62 chr4 127442852 127442948 -56845714 + L1PA5 LINE L1 6063 6152 -2 324 291 23 0 chr4 127443022 127443108 -56845554 - MER5B DNA MER1_type -4 174 87 382 339 85 24 chr4 127443675 127443840 -56844822 + MIR3 SINE MIR 11 185 -23 979 76 0 0 chr4 127443937 127444055 -56844607 - AluSc SINE Alu -20 289 172 317 351 203 12 chr4 127444402 127444815 -56843847 + L2 LINE L2 2302 2793 -521 217 369 6 65 chr4 127444878 127445046 -56843616 + L2 LINE L2 2943 3100 -172 313 234 18 90 chr4 127446376 127446487 -56842175 - MIR SINE MIR -70 192 90 277 242 61 0 chr4 127446852 127446918 -56841744 - MER5B DNA MER1_type -108 70 1 22 0 0 0 chr4 127446999 127447021 -56841641 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 127447276 127447304 -56841358 + AT_rich Low_complexity Low_complexity 1 28 0 181 315 0 0 chr4 127451565 127451619 -56837043 - MIR3 SINE MIR -14 194 141 233 239 7 84 chr4 127451619 127451761 -56836901 - L1ME4a LINE L1 -15 6106 5976 991 245 61 0 chr4 127452075 127452320 -56836342 + MIR SINE MIR 3 262 0 378 202 46 9 chr4 127452344 127452453 -56836209 - L1ME4a LINE L1 -518 5603 5491 191 319 71 26 chr4 127452453 127452566 -56836096 - MIR SINE MIR -55 153 36 43074 49 3 1 chr4 127453285 127459424 -56829238 - L1PA4 LINE L1 0 6155 7 458 209 0 64 chr4 127460070 127460180 -56828482 + FLAM_A SINE Alu 22 124 -18 2046 133 7 0 chr4 127464062 127464363 -56824299 + AluSx SINE Alu 1 303 -9 2182 110 3 7 chr4 127464486 127464786 -56823876 + AluSp SINE Alu 5 303 -10 198 0 0 0 chr4 127464928 127464950 -56823712 + (TTA)n Simple_repeat Simple_repeat 1 22 0 290 384 0 22 chr4 127465637 127465775 -56822887 + L2 LINE L2 2150 2284 -1030 286 196 0 0 chr4 127465825 127465876 -56822786 - L2 LINE L2 0 3313 3263 1725 152 167 43 chr4 127466063 127466319 -56822343 - LTR47A LTR ERVL 0 452 128 2158 168 44 0 chr4 127466319 127466705 -56821957 + MER57A LTR ERV1 1 403 0 1725 152 167 43 chr4 127466705 127466843 -56821819 - LTR47A LTR ERVL -324 128 9 474 277 36 22 chr4 127466857 127466994 -56821668 - MIR SINE MIR -77 185 47 265 374 141 16 chr4 127467143 127467465 -56821197 + L2 LINE L2 2661 3019 -253 252 0 0 0 chr4 127467469 127467497 -56821165 + (T)n Simple_repeat Simple_repeat 1 28 0 33011 102 11 59 chr4 127467502 127473976 -56814686 + L1PA7 LINE L1 12 6152 -2 189 356 96 0 chr4 127474073 127474146 -56814516 + L2 LINE L2 3127 3206 -66 619 239 0 15 chr4 127474402 127474532 -56814130 - FLAM_A SINE Alu -5 128 1 2561 151 16 25 chr4 127475224 127475662 -56813000 - Tigger2a DNA MER2_type 0 434 1 229 200 183 0 chr4 127476293 127476353 -56812309 + MLT1L LTR MaLR 5 75 -540 374 271 38 86 chr4 127476421 127476631 -56812031 - MER20 DNA MER1_type -19 200 1 * 380 306 93 44 chr4 127476631 127477042 -56811620 + MLT1J LTR MaLR 120 507 -4 181 319 86 64 chr4 127477609 127477755 -56810907 + L2 LINE L2 759 900 -2414 180 0 0 0 chr4 127477755 127477775 -56810887 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 181 319 86 64 chr4 127477775 127477850 -56810812 + L2 LINE L2 900 972 -2342 1910 127 15 0 chr4 127477850 127478144 -56810518 - AluSx SINE Alu 0 308 11 181 319 86 64 chr4 127478144 127478233 -56810429 + L2 LINE L2 972 1078 -2236 1598 339 133 25 chr4 127478386 127479476 -56809186 + L2 LINE L2 1466 2673 -641 247 267 163 59 chr4 127479688 127479890 -56808772 + L2 LINE L2 3090 3312 -1 399 330 152 13 chr4 127479892 127480359 -56808303 - L2 LINE L2 -802 2512 1981 234 382 55 0 chr4 127480431 127480541 -56808121 + L2 LINE L2 3137 3252 -20 583 244 57 11 chr4 127481105 127481281 -56807381 + MIR SINE MIR 21 204 -58 410 199 2 8 chr4 127483441 127483531 -56805131 - L1MA6 LINE L1 -10 6281 6201 396 208 0 38 chr4 127483454 127483560 -56805102 - L1MA5A LINE L1 -19 6278 6177 22 35 0 0 chr4 127485581 127485610 -56803052 + AT_rich Low_complexity Low_complexity 1 29 0 363 269 26 0 chr4 127486778 127486878 -56801784 + MER20B DNA MER1_type 53 157 -62 3068 140 12 17 chr4 127487464 127488022 -56800640 - MLT2B2 LTR ERVL 0 520 1 239 289 119 13 chr4 127488596 127488755 -56799907 - LTR33 LTR ERVL -83 438 263 847 213 56 9 chr4 127489302 127489601 -56799061 - MLT1A1 LTR MaLR 0 365 1 2503 131 24 26 chr4 127489687 127490144 -56798518 - L1MC2 LINE L1 -8 6336 5881 983 223 33 58 chr4 127490329 127490603 -56798059 - MLT2B1 LTR ERVL -253 267 1 285 29 0 0 chr4 127490625 127490659 -56798003 + (TG)n Simple_repeat Simple_repeat 1 34 0 237 65 0 0 chr4 127490661 127490692 -56797970 + (GA)n Simple_repeat Simple_repeat 2 32 0 6310 92 32 4 chr4 127490999 127491758 -56796904 - L1PA14 LINE L1 0 6161 5425 3416 186 40 72 chr4 127491758 127492759 -56795903 + LTR5 LTR ERVK 1 969 0 6310 92 32 4 chr4 127492759 127493828 -56794834 - L1PA14 LINE L1 -736 5425 4308 2064 135 18 47 chr4 127494072 127494458 -56794204 + THE1C LTR MaLR 1 375 0 297 293 61 0 chr4 127494504 127494603 -56794059 + MIR SINE MIR 108 212 -50 471 258 17 8 chr4 127495622 127495742 -56792920 - MER5B DNA MER1_type -1 177 57 22 0 0 0 chr4 127495879 127495901 -56792761 + AT_rich Low_complexity Low_complexity 1 22 0 5435 189 31 29 chr4 127496489 127497378 -56791284 - L1MB8 LINE L1 -5 6173 5287 4008 122 24 8 chr4 127497378 127498015 -56790647 - L1PA16 LINE L1 -9 6157 5511 5435 189 31 29 chr4 127498015 127498893 -56789769 - L1MB8 LINE L1 -891 5287 4398 185 0 40 0 chr4 127498893 127498918 -56789744 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 5435 189 31 29 chr4 127498918 127499235 -56789427 - L1MB8 LINE L1 -1780 4398 4083 1491 205 96 35 chr4 127499239 127499692 -56788970 - L1M4 LINE L1 -811 5335 4854 269 68 23 0 chr4 127499692 127499736 -56788926 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 1291 30 0 42 chr4 127499736 127499904 -56788758 - L1PA4 LINE L1 -24 6131 5971 4542 20 15 0 chr4 127499910 127500452 -56788210 + L1P2 LINE L1 5254 5803 -352 195 129 0 0 chr4 127500478 127500509 -56788153 + (CA)n Simple_repeat Simple_repeat 2 32 0 2798 196 47 30 chr4 127500523 127501228 -56787434 - L1M4 LINE L1 -1316 4830 4114 189 94 0 0 chr4 127501229 127501261 -56787401 + (TTTTTA)n Simple_repeat Simple_repeat 3 34 0 1896 99 11 7 chr4 127501262 127501544 -56787118 - L1PB1 LINE L1 -3 6864 6582 627 82 9 18 chr4 127501546 127501656 -56787006 + (TA)n Simple_repeat Simple_repeat 1 109 0 14540 183 9 8 chr4 127501656 127505200 -56783462 - L1PB1 LINE L1 -371 6496 2948 3002 214 79 13 chr4 127505192 127506915 -56781747 - L1PB1 LINE L1 -4876 1987 6 * 2243 221 86 41 chr4 127506931 127507033 -56781629 - L1M4 LINE L1 -2017 4129 4033 2076 133 39 31 chr4 127507033 127507393 -56781269 + THE1B LTR MaLR 1 363 -1 2243 221 86 41 chr4 127507393 127508054 -56780608 - L1M4 LINE L1 -2113 4033 3331 1431 293 81 30 chr4 127508077 127508838 -56779824 - L2 LINE L2 -91 3222 2422 322 320 87 0 chr4 127508859 127508962 -56779700 + L2 LINE L2 3119 3230 -42 501 262 15 117 chr4 127509670 127510124 -56778538 - L1MC4 LINE L1 0 8042 7635 268 255 153 20 chr4 127511781 127511879 -56776783 + L2 LINE L2 3202 3312 -1 396 40 0 0 chr4 127512147 127512197 -56776465 + (TG)n Simple_repeat Simple_repeat 2 51 0 274 287 29 15 chr4 127512386 127512522 -56776140 - L1ME LINE L1 -315 5806 5669 32 26 0 0 chr4 127513025 127513064 -56775598 + AT_rich Low_complexity Low_complexity 1 39 0 327 104 0 0 chr4 127514942 127514990 -56773672 + (TA)n Simple_repeat Simple_repeat 2 49 0 227 73 0 0 chr4 127514992 127515033 -56773629 - LTR66 LTR ERVL -171 439 399 222 171 0 0 chr4 127515033 127515074 -56773588 + (TA)n Simple_repeat Simple_repeat 2 42 0 35 88 0 0 chr4 127515118 127515209 -56773453 + AT_rich Low_complexity Low_complexity 1 91 0 457 240 23 0 chr4 127515224 127515441 -56773221 + (TA)n Simple_repeat Simple_repeat 1 221 0 1753 168 157 11 chr4 127516191 127516554 -56772108 - MER47B DNA MER2_type -1 417 2 315 294 283 0 chr4 127517451 127517638 -56771024 + MIR SINE MIR 18 257 -5 304 208 0 0 chr4 127517967 127518020 -56770642 - MIR SINE MIR -85 177 125 405 234 11 0 chr4 127518201 127518295 -56770367 + MIR SINE MIR 168 262 0 317 313 10 0 chr4 127519609 127519705 -56768957 + CT-rich Low_complexity Low_complexity 4 100 0 276 185 0 0 chr4 127520037 127520091 -56768571 + CT-rich Low_complexity Low_complexity 4 57 0 2746 160 54 12 chr4 127520699 127520742 -56767920 - MLT2B1 LTR ERVL 0 520 480 288 53 0 0 chr4 127520742 127520780 -56767882 + (TCTG)n Simple_repeat Simple_repeat 3 40 0 2746 160 54 12 chr4 127520780 127521235 -56767427 - MLT2B1 LTR ERVL -40 480 1 984 316 63 15 chr4 127522925 127523336 -56765326 + MLT1K LTR MaLR 69 499 -89 182 375 90 35 chr4 127523860 127524004 -56764658 - L2 LINE L2 -31 3241 3090 4414 158 23 43 chr4 127524083 127525087 -56763575 - MER11C LTR ERVK 0 1071 1 2852 179 24 14 chr4 127525510 127526096 -56762566 - L1MC3 LINE L1 -21 7764 7173 945 222 43 35 chr4 127527330 127527560 -56761102 + MIR SINE MIR 10 241 -21 598 288 77 36 chr4 127527632 127528049 -56760613 + LTR33 LTR ERVL 38 471 -50 255 281 31 42 chr4 127528236 127528332 -56760330 + L2 LINE L2 3199 3293 -20 326 275 141 47 chr4 127528956 127529105 -56759557 + MIR SINE MIR 92 254 -8 2342 189 63 26 chr4 127529787 127529836 -56758826 - MLT2B1 LTR ERVL -10 510 464 468 0 0 0 chr4 127529836 127529888 -56758774 + (TCCA)n Simple_repeat Simple_repeat 1 52 0 1488 168 117 29 chr4 127529898 127530214 -56758448 + MER2 DNA MER2_type 1 344 0 2342 189 63 26 chr4 127530214 127530645 -56758017 - MLT2B1 LTR ERVL -64 456 1 311 319 0 0 chr4 127530645 127530739 -56757923 + MIR3 SINE MIR 86 179 -29 375 78 0 0 chr4 127531496 127531547 -56757115 + (CA)n Simple_repeat Simple_repeat 2 52 0 1823 87 23 0 chr4 127535024 127535289 -56753373 - L1MA1 LINE L1 -6 6296 6026 572 292 120 59 chr4 127535297 127535471 -56753191 + MLT1H LTR MaLR 99 261 -288 1293 121 79 9 chr4 127535471 127535686 -56752976 - MER30 DNA MER1_type 0 230 1 572 292 120 59 chr4 127535686 127535936 -56752726 + MLT1H LTR MaLR 261 549 0 2259 107 0 3 chr4 127536538 127536837 -56751825 - AluSq SINE Alu -13 300 3 2519 70 0 0 chr4 127536848 127537150 -56751512 - AluY SINE Alu -9 302 1 215 346 13 0 chr4 127539082 127539160 -56749502 - L2 LINE L2 -13 3259 3181 2077 251 7 22 chr4 127539873 127540423 -56748239 - MLT1F LTR MaLR 0 542 1 29 28 0 0 chr4 127542264 127542300 -56746362 + AT_rich Low_complexity Low_complexity 1 36 0 1966 120 19 0 chr4 127542500 127542767 -56745895 - AluSx SINE Alu -27 285 14 348 333 120 19 chr4 127543538 127543754 -56744908 + MIR SINE MIR 21 258 -4 282 397 133 8 chr4 127543871 127544105 -56744557 + L2 LINE L2 1706 1968 -1346 181 163 41 0 chr4 127544211 127544260 -56744402 + CT-rich Low_complexity Low_complexity 4 54 0 837 209 22 31 chr4 127544342 127544567 -56744095 + L1ME2 LINE L1 5815 6037 -127 4866 150 64 32 chr4 127546039 127546486 -56742176 - L1MA4A LINE L1 -4 6299 5868 2379 85 7 3 chr4 127546486 127546793 -56741869 - AluY SINE Alu -3 308 1 4866 150 64 32 chr4 127546793 127547531 -56741131 - L1MA4A LINE L1 -435 5868 5073 205 161 0 0 chr4 127547804 127547835 -56740827 + polypyrimidine Low_complexity Low_complexity 2 32 0 22 0 0 0 chr4 127548505 127548527 -56740135 + AT_rich Low_complexity Low_complexity 1 22 0 1948 164 46 15 chr4 127549950 127550593 -56738069 + L1MC1 LINE L1 4886 5544 -751 6177 117 88 100 chr4 127550599 127552473 -56736189 - pTR5 LTR ERV1 0 2438 741 4651 126 26 8 chr4 127552475 127552924 -56735738 + L1MC1 LINE L1 5548 6018 -315 2101 205 20 15 chr4 127552924 127552953 -56735709 + LOR1b LTR ERV1 1 28 -433 2200 121 0 0 chr4 127552953 127553250 -56735412 - AluSq SINE Alu -14 299 3 2101 205 20 15 chr4 127553250 127553679 -56734983 + LOR1b LTR ERV1 28 461 0 4651 126 26 8 chr4 127553679 127553989 -56734673 + L1MC1 LINE L1 6018 6321 -12 219 341 70 23 chr4 127554110 127554239 -56734423 + L2 LINE L2 1766 1900 -1414 2539 172 6 18 chr4 127555193 127555704 -56732958 - L1MB8 LINE L1 0 6178 5674 1738 104 12 0 chr4 127555721 127555971 -56732691 - L1PA11 LINE L1 -10 6164 5912 2214 166 43 23 chr4 127555973 127556758 -56731904 - L1MB8 LINE L1 -519 5665 4853 562 356 115 43 chr4 127557060 127557749 -56730913 + L2 LINE L2 2225 2962 -352 1854 135 187 8 chr4 127558020 127558383 -56730279 + MSTA LTR MaLR 1 428 0 2699 98 3 8 chr4 127559039 127559416 -56729246 - THE1C LTR MaLR 0 375 1 506 335 85 68 chr4 127559756 127560096 -56728566 - L2 LINE L2 0 3272 2927 339 85 0 0 chr4 127560737 127560784 -56727878 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 938 245 157 46 chr4 127561182 127561660 -56727002 - MLT1G1 LTR MaLR -2 553 23 824 305 106 39 chr4 127562188 127562630 -56726032 - L3 LINE CR1 -2 1575 1104 2485 68 0 37 chr4 127562665 127562987 -56725675 + AluY SINE Alu 1 310 -1 21 36 0 0 chr4 127563516 127563544 -56725118 + AT_rich Low_complexity Low_complexity 1 28 0 7921 161 50 12 chr4 127563901 127564257 -56724405 + MER21A-int LTR ERV1 2712 3053 -1138 198 71 0 0 chr4 127564257 127564285 -56724377 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7921 161 50 12 chr4 127564285 127565354 -56723308 + MER21A-int LTR ERV1 3053 4191 0 1224 166 102 5 chr4 127565354 127565764 -56722898 + MER21A LTR ERV1 1 486 -377 273 331 139 53 chr4 127566562 127566937 -56721725 - L3 LINE CR1 -79 1498 1092 2749 191 21 39 chr4 127567211 127567834 -56720828 - LTR9 LTR ERV1 0 612 1 2271 102 0 0 chr4 127568393 127568697 -56719965 + AluSg SINE Alu 1 304 -6 1605 217 0 7 chr4 127569243 127569552 -56719110 - AluJo SINE Alu -5 307 1 883 164 43 77 chr4 127570367 127570448 -56718214 + L1PA16 LINE L1 5958 6040 -126 2446 94 3 0 chr4 127570448 127570757 -56717905 + AluSq SINE Alu 1 310 -3 883 164 43 77 chr4 127570757 127570882 -56717780 + L1PA16 LINE L1 6040 6157 -9 1303 139 0 0 chr4 127570920 127571107 -56717555 + AluSg/x SINE Alu 115 301 -9 334 188 0 0 chr4 127571109 127571178 -56717484 + L1MA10 LINE L1 6259 6327 -7 234 125 0 62 chr4 127571227 127571275 -56717387 + Alu SINE Alu 256 300 -2 382 159 12 229 chr4 127571578 127571748 -56716914 + FLAM_A SINE Alu 1 133 0 255 155 69 35 chr4 127571761 127571819 -56716843 + FLAM SINE Alu 73 132 -1 577 233 99 101 chr4 127572129 127572545 -56716117 + MER69 DNA AcHobo 989 1403 -1123 961 237 46 16 chr4 127573868 127574172 -56714490 + MER69 DNA AcHobo 1466 1778 -748 2195 214 79 31 chr4 127574282 127575025 -56713637 + MER69 DNA AcHobo 1740 2518 -8 521 262 150 34 chr4 127575568 127575801 -56712861 + MLT1K LTR MaLR 319 578 -10 605 249 135 22 chr4 127576019 127576204 -56712458 + L2 LINE L2 3107 3312 -1 725 303 20 20 chr4 127577459 127577710 -56710952 + MIR SINE MIR 11 261 -1 214 233 211 22 chr4 127577988 127578078 -56710584 - L2 LINE L2 0 3272 3166 500 291 121 14 chr4 127580181 127580545 -56708117 - L1ME4a LINE L1 -169 5952 5550 2092 94 17 0 chr4 127581493 127581791 -56706871 - L1PA14 LINE L1 0 6161 5859 4114 128 27 12 chr4 127581931 127583182 -56705480 - L1PA14 LINE L1 -306 5855 4586 345 175 93 21 chr4 127583434 127583531 -56705131 - MLT1I LTR MaLR 0 409 306 496 244 63 9 chr4 127583654 127583875 -56704787 - L1ME4a LINE L1 -1517 4629 4397 361 275 68 111 chr4 127583916 127584331 -56704331 + MLT1J LTR MaLR 108 504 -7 329 268 58 14 chr4 127584356 127584494 -56704168 - L1ME4a LINE L1 -1786 4360 4217 1282 169 0 9 chr4 127584677 127584896 -56703766 + AluJo SINE Alu 96 312 0 33 0 0 0 chr4 127585421 127585454 -56703208 + AT_rich Low_complexity Low_complexity 1 33 0 574 182 27 9 chr4 127585894 127586004 -56702658 + AluJo SINE Alu 96 207 -105 2133 232 51 4 chr4 127586314 127586848 -56701814 + L1ME1 LINE L1 5603 6161 -5 378 242 25 42 chr4 127588244 127588364 -56700298 - L1ME1 LINE L1 0 6166 6049 2011 87 90 0 chr4 127588386 127588652 -56700010 + AluSc SINE Alu 1 290 -19 2054 108 10 10 chr4 127588652 127588958 -56699704 - L1PB1 LINE L1 -5 6146 5841 361 267 0 15 chr4 127589004 127589139 -56699523 + (TATATG)n Simple_repeat Simple_repeat 6 138 0 5139 173 15 19 chr4 127589139 127590781 -56697881 - L1PB1 LINE L1 -349 5802 4167 1832 245 58 35 chr4 127590780 127591400 -56697262 - L1ME1 LINE L1 -107 6059 5426 * 1924 185 122 50 chr4 127591564 127592060 -56696602 + MLT1F1 LTR MaLR 5 643 -11 478 222 10 7 chr4 127592074 127592188 -56696474 + MLT1F1-int LTR MaLR 1 111 -1273 614 361 121 5 chr4 127593571 127593967 -56694695 - LTR16A LTR ERVL -8 442 1 259 239 0 0 chr4 127594030 127594101 -56694561 + (TA)n Simple_repeat Simple_repeat 1 71 0 26 0 0 0 chr4 127594178 127594204 -56694458 + AT_rich Low_complexity Low_complexity 1 26 0 459 102 28 148 chr4 127594494 127594602 -56694060 - AluJo SINE Alu -178 134 40 24 0 0 0 chr4 127596689 127596713 -56691949 + AT_rich Low_complexity Low_complexity 1 24 0 279 0 0 0 chr4 127597275 127597306 -56691356 + (TG)n Simple_repeat Simple_repeat 2 32 0 908 226 38 104 chr4 127599139 127599484 -56689178 - MLT1G1 LTR MaLR -273 322 1 1028 184 89 120 chr4 127600301 127600659 -56688003 + MLT1A1 LTR MaLR 11 357 -8 444 257 71 39 chr4 127600969 127601310 -56687352 - MLT1H LTR MaLR -3 590 237 232 261 159 0 chr4 127601332 127601401 -56687261 - MLT1I LTR MaLR -232 177 98 238 256 37 73 chr4 127601695 127601777 -56686885 + MER20B DNA MER1_type 59 137 -646 335 346 52 13 chr4 127601916 127602069 -56686593 + MIR3 SINE MIR 10 168 -40 1504 174 28 108 chr4 127602730 127603154 -56685508 - MLT1B LTR MaLR 0 390 1 236 284 15 0 chr4 127604980 127605047 -56683615 + CT-rich Low_complexity Low_complexity 4 71 0 244 208 13 52 chr4 127605209 127605286 -56683376 + SATR1 Satellite Satellite 114 187 -283 194 211 254 0 chr4 127605300 127605371 -56683291 - MIR SINE MIR -10 252 164 214 319 29 0 chr4 127605550 127605619 -56683043 - L2 LINE L2 0 3313 3243 27 0 0 0 chr4 127605849 127605876 -56682786 + AT_rich Low_complexity Low_complexity 1 27 0 2044 164 78 15 chr4 127606113 127606510 -56682152 - MSTB LTR MaLR -2 424 3 8283 193 25 8 chr4 127606512 127608136 -56680526 - MSTB-int LTR MaLR 0 1651 1 2186 195 22 7 chr4 127608136 127608542 -56680120 - MSTB LTR MaLR 0 426 15 2804 250 95 59 chr4 127611085 127611140 -56677522 - L1MC5 LINE L1 -60 7901 7849 342 0 0 0 chr4 127611140 127611178 -56677484 + (TG)n Simple_repeat Simple_repeat 2 39 0 2804 250 95 59 chr4 127611178 127611687 -56676975 - L1MC5 LINE L1 -112 7849 7360 1684 161 30 30 chr4 127611687 127612023 -56676639 + MER44D DNA MER2_type 4 609 0 2804 250 95 59 chr4 127612023 127612686 -56675976 - L1MC5 LINE L1 -601 7360 6722 2569 143 22 32 chr4 127612686 127613183 -56675479 + LTR22B LTR ERVK 1 492 0 2804 250 95 59 chr4 127613183 127613681 -56674981 - L1MC5 LINE L1 -1239 6722 6243 2619 43 0 0 chr4 127613681 127613985 -56674677 + AluY SINE Alu 1 304 -7 2804 250 95 59 chr4 127613985 127614552 -56674110 - L1MC5 LINE L1 -1718 6243 5486 416 179 0 13 chr4 127614554 127614632 -56674030 + Tigger2 DNA MER2_type 2 78 -2640 803 272 0 6 chr4 127614660 127614833 -56673829 - MER8 DNA MER2_type -67 172 1 308 292 113 10 chr4 127614844 127615039 -56673623 - L1MC5 LINE L1 -2339 5469 5255 22 35 0 0 chr4 127615083 127615112 -56673550 + AT_rich Low_complexity Low_complexity 1 29 0 321 145 171 0 chr4 127615128 127615204 -56673458 - L1MB1 LINE L1 -1 6167 6079 4789 162 13 6 chr4 127615222 127616199 -56672463 - L1MB1 LINE L1 -73 6095 5109 * 5351 201 31 11 chr4 127616198 127617432 -56671230 - L1 LINE L1 -925 5457 4200 2377 251 65 64 chr4 127617430 127617900 -56670762 - L1 LINE L1 -4140 2242 1774 * 2745 110 17 0 chr4 127617900 127618309 -56670353 - L1PA14 LINE L1 -2 6159 5744 2377 251 65 64 chr4 127618309 127619280 -56669382 - L1 LINE L1 -4608 1774 777 1740 256 114 59 chr4 127619295 127619568 -56669094 - L1MB1 LINE L1 -1220 5162 4905 5843 59 7 8 chr4 127619568 127620324 -56668338 + L1PA7 LINE L1 5393 6154 0 1740 256 114 59 chr4 127620324 127621904 -56666758 - L1MB1 LINE L1 -1477 4905 3192 515 341 139 41 chr4 127621938 127622398 -56666264 - L2 LINE L2 -583 2731 2227 241 355 43 7 chr4 127623310 127623448 -56665214 - MIR SINE MIR -67 195 53 183 223 126 78 chr4 127623789 127623892 -56664770 - L2 LINE L2 -1247 2067 1960 30 0 0 0 chr4 127624409 127624439 -56664223 + AT_rich Low_complexity Low_complexity 1 30 0 1249 209 6 87 chr4 127625826 127626147 -56662515 - AluJo SINE Alu -15 297 3 258 386 0 0 chr4 127626185 127626273 -56662389 - L2 LINE L2 -49 3223 3136 456 332 37 0 chr4 127626456 127626614 -56662048 + MIR SINE MIR 35 198 -51 2273 158 65 0 chr4 127628355 127628755 -56659907 + MSTB LTR MaLR 1 426 0 1676 158 62 10 chr4 127628999 127629291 -56659371 + MER7A DNA MER2_type 2 306 -40 26 50 0 0 chr4 127629912 127629952 -56658710 + AT_rich Low_complexity Low_complexity 1 40 0 14025 159 51 14 chr4 127629952 127633614 -56655048 - L1PB1 LINE L1 -2 6865 2950 297 0 0 0 chr4 127633614 127633647 -56655015 + (TG)n Simple_repeat Simple_repeat 1 33 0 14025 159 51 14 chr4 127633647 127635307 -56653355 - L1PB1 LINE L1 -3917 2950 1352 2510 111 16 5 chr4 127635309 127635678 -56652984 + THE1C LTR MaLR 3 375 0 8610 118 31 46 chr4 127635678 127637057 -56651605 + THE1C-int LTR MaLR 1 1359 -221 2514 130 3 11 chr4 127637078 127637456 -56651206 + THE1C LTR MaLR 1 375 0 247 116 0 0 chr4 127637457 127637500 -56651162 - L1PB1 LINE L1 -5508 1355 1313 6004 162 57 6 chr4 127637501 127638607 -56650055 - L1PB1 LINE L1 -5701 1162 1 2088 241 76 43 chr4 127638698 127638955 -56649707 - L1MEc LINE L1 -5052 1344 1097 2954 57 0 0 chr4 127638955 127639327 -56649335 + L1PA8 LINE L1 5801 6172 0 2088 241 76 43 chr4 127639327 127639881 -56648781 - L1MEc LINE L1 -5299 1097 506 1634 178 16 66 chr4 127639886 127640263 -56648399 - MLT1A1 LTR MaLR -7 358 1 699 309 5 14 chr4 127640267 127640490 -56648172 - L1MEc LINE L1 -5894 502 282 2323 159 3 3 chr4 127640519 127640872 -56647790 + THE1B LTR MaLR 10 362 -2 814 267 23 42 chr4 127640872 127641134 -56647528 - L1MEc LINE L1 -6125 271 15 437 244 26 45 chr4 127641197 127641353 -56647309 + L1 LINE L1 3513 3665 -2481 292 56 0 0 chr4 127641913 127641949 -56646713 + MADE1 DNA Mariner 45 80 0 21 57 0 0 chr4 127642339 127642374 -56646288 + AT_rich Low_complexity Low_complexity 1 35 0 28 48 0 0 chr4 127642442 127642484 -56646178 + AT_rich Low_complexity Low_complexity 1 42 0 260 246 122 1 chr4 127642906 127642985 -56645677 + MER5B DNA MER1_type 1 80 -98 918 175 26 0 chr4 127643216 127643370 -56645292 + FRAM SINE Alu 1 158 -8 24 0 0 0 chr4 127643496 127643520 -56645142 + AT_rich Low_complexity Low_complexity 1 24 0 354 23 0 0 chr4 127643785 127643828 -56644834 + (TG)n Simple_repeat Simple_repeat 1 43 0 402 39 0 0 chr4 127644268 127644320 -56644342 + (TG)n Simple_repeat Simple_repeat 1 52 0 2094 166 40 31 chr4 127644901 127645322 -56643340 - MSTB LTR MaLR 0 426 2 1238 21 0 0 chr4 127645903 127646048 -56642614 - L1PA2 LINE L1 0 6155 6011 537 298 111 8 chr4 127646048 127646391 -56642271 - L1ME4a LINE L1 -7 6114 5733 327 130 0 0 chr4 127646393 127646447 -56642215 + (TCC)n Simple_repeat Simple_repeat 2 55 0 260 196 76 33 chr4 127646454 127646546 -56642116 - L1ME4a LINE L1 -392 5729 5634 236 360 24 43 chr4 127646949 127647113 -56641549 + MIR3 SINE MIR 47 207 -1 1699 127 0 4 chr4 127648177 127648414 -56640248 + AluSx SINE Alu 6 241 -71 23 33 0 0 chr4 127648943 127648973 -56639689 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr4 127651374 127651409 -56637253 + AT_rich Low_complexity Low_complexity 1 35 0 216 163 0 0 chr4 127651474 127651517 -56637145 + (TG)n Simple_repeat Simple_repeat 2 44 0 248 59 0 0 chr4 127651689 127651723 -56636939 - HSMAR1 DNA Mariner -1253 34 1 342 285 48 111 chr4 127652363 127652570 -56636092 + MIR3 SINE MIR 10 203 -5 1696 216 171 2 chr4 127652718 127652756 -56635906 - MLT2B1 LTR ERVL 0 520 490 318 26 0 0 chr4 127652756 127652795 -56635867 + (CA)n Simple_repeat Simple_repeat 2 40 0 1696 216 171 2 chr4 127652795 127653201 -56635461 - MLT2B1 LTR ERVL -30 490 1 23 0 0 0 chr4 127654050 127654073 -56634589 + AT_rich Low_complexity Low_complexity 1 23 0 516 244 7 30 chr4 127654368 127654503 -56634159 + MLT1H LTR MaLR 95 226 -323 3052 117 40 8 chr4 127655014 127655509 -56633153 + MER9 LTR ERVK 1 511 0 4655 101 7 19 chr4 127655509 127656184 -56632478 + HERVK9 LTR ERVK 1 667 -5249 * 29958 90 3 6 chr4 127656180 127660200 -56628462 + HERVK9 LTR ERVK 1626 5634 -282 1772 136 100 12 chr4 127660225 127660550 -56628112 + HERVK9 LTR ERVK 5637 5916 0 2935 133 38 12 chr4 127660550 127661048 -56627614 + MER9 LTR ERVK 1 511 0 906 277 55 31 chr4 127661075 127661688 -56626974 - L1ME LINE L1 -360 5804 5177 1523 247 65 54 chr4 127661688 127662222 -56626440 + MLT1F LTR MaLR 3 542 0 754 94 27 101 chr4 127662233 127662382 -56626280 - L1PA12 LINE L1 -319 5849 5712 305 321 88 26 chr4 127662410 127662603 -56626059 - L1ME LINE L1 -1768 4378 4174 252 309 59 15 chr4 127662603 127662617 -56626045 - L1MA10 LINE L1 -2 6332 6319 655 257 63 19 chr4 127662617 127662823 -56625839 - L1ME1 LINE L1 -5 6161 5947 3557 169 30 20 chr4 127662870 127663570 -56625092 - L1MB1 LINE L1 -1 6167 5461 2999 191 71 38 chr4 127663600 127664456 -56624206 - L1MB1 LINE L1 -686 5482 4623 463 144 16 213 chr4 127664456 127664644 -56624018 - L1MB1 LINE L1 -1481 4665 4515 215 119 60 0 chr4 127664691 127664758 -56623904 + (TA)n Simple_repeat Simple_repeat 1 71 0 230 224 26 26 chr4 127664891 127664967 -56623695 + (CATA)n Simple_repeat Simple_repeat 4 79 0 221 139 48 30 chr4 127664976 127665141 -56623521 + (TA)n Simple_repeat Simple_repeat 1 168 0 24 0 0 0 chr4 127665157 127665181 -56623481 + AT_rich Low_complexity Low_complexity 1 24 0 1876 226 60 20 chr4 127665181 127666256 -56622406 - L1ME1 LINE L1 -241 5925 4799 2343 100 0 0 chr4 127666272 127666572 -56622090 - AluY SINE Alu -11 300 1 5459 42 6 0 chr4 127666585 127667251 -56621411 - L1PA5 LINE L1 0 6154 5485 23278 46 2 0 chr4 127667252 127670159 -56618503 + L1P LINE L1 2001 4912 -1234 31 44 0 0 chr4 127671838 127671883 -56616779 + AT_rich Low_complexity Low_complexity 1 45 0 910 28 0 0 chr4 127671965 127672074 -56616588 + L1PA3 LINE L1 6047 6155 0 21 57 0 0 chr4 127672239 127672274 -56616388 + AT_rich Low_complexity Low_complexity 1 35 0 4949 145 55 7 chr4 127672274 127673171 -56615491 - L1MA5A LINE L1 -4 6293 5354 476 273 15 73 chr4 127673324 127673529 -56615133 - L2 LINE L2 -16 3297 3105 1962 232 91 46 chr4 127673530 127673844 -56614818 - L2 LINE L2 -423 2891 2593 826 217 48 6 chr4 127673844 127674010 -56614652 + FAM SINE Alu 1 173 -2 1962 232 91 46 chr4 127674010 127674375 -56614287 - L2 LINE L2 -721 2593 2181 258 32 0 0 chr4 127674400 127674431 -56614231 + (TC)n Simple_repeat Simple_repeat 2 32 0 1557 198 9 28 chr4 127676130 127676448 -56612214 - AluJb SINE Alu 0 312 1 21 0 0 0 chr4 127677458 127677479 -56611183 + AT_rich Low_complexity Low_complexity 1 21 0 6798 61 18 0 chr4 127677592 127678590 -56610072 + L1PA7 LINE L1 5132 6150 -4 1943 122 28 3 chr4 127679479 127679767 -56608895 + AluSc SINE Alu 1 295 -14 285 339 130 0 chr4 127679806 127679921 -56608741 - L2 LINE L2 -1 3312 3183 259 376 56 0 chr4 127680030 127680155 -56608507 + MIR SINE MIR 20 151 -111 354 220 0 0 chr4 127680397 127680497 -56608165 + (CATA)n Simple_repeat Simple_repeat 1 100 0 274 209 50 14 chr4 127680504 127680643 -56608019 + (TA)n Simple_repeat Simple_repeat 2 145 0 230 361 82 0 chr4 127682009 127682106 -56606556 + L2 LINE L2 3158 3262 -10 22 0 0 0 chr4 127682217 127682239 -56606423 + AT_rich Low_complexity Low_complexity 1 22 0 604 144 10 0 chr4 127682289 127682393 -56606269 - L1MA2 LINE L1 0 6304 6200 242 77 0 0 chr4 127682393 127682432 -56606230 + L1MA4 LINE L1 6093 6131 -169 707 319 56 100 chr4 127682435 127683404 -56605258 + L2 LINE L2 2100 3012 -260 478 308 14 20 chr4 127683419 127683565 -56605097 + L2 LINE L2 3169 3313 0 2131 107 20 0 chr4 127683614 127683912 -56604750 - AluSq SINE Alu -9 304 1 626 184 71 53 chr4 127685016 127685230 -56603432 - LTR45 LTR ERV1 0 525 304 655 232 242 5 chr4 127685838 127686032 -56602630 + MIR SINE MIR 4 243 -19 199 231 19 39 chr4 127686484 127686536 -56602126 - L2 LINE L2 -5 3267 3217 5239 162 26 29 chr4 127686875 127687378 -56601284 - L1MA4 LINE L1 -13 6287 5784 378 0 0 0 chr4 127687378 127687420 -56601242 + (TA)n Simple_repeat Simple_repeat 1 42 0 5239 162 26 29 chr4 127687420 127688715 -56599947 - L1MA4 LINE L1 -516 5784 4500 1798 163 13 7 chr4 127689672 127689973 -56598689 + AluJb SINE Alu 1 303 -9 27 0 0 0 chr4 127690707 127690734 -56597928 + AT_rich Low_complexity Low_complexity 1 27 0 587 104 42 0 chr4 127691009 127691105 -56597557 - L1MA6 LINE L1 0 6300 6201 21 71 0 0 chr4 127693516 127693558 -56595104 + AT_rich Low_complexity Low_complexity 1 42 0 420 273 0 28 chr4 127693698 127693841 -56594821 + L1PB4 LINE L1 6016 6154 -2 2424 87 0 6 chr4 127694106 127694418 -56594244 - AluSq SINE Alu -1 312 3 196 128 21 21 chr4 127694836 127694883 -56593779 + T-rich Low_complexity Low_complexity 1 47 0 191 163 0 23 chr4 127694891 127694934 -56593728 + CT-rich Low_complexity Low_complexity 3 44 0 484 231 45 22 chr4 127695849 127695983 -56592679 + MIR SINE MIR 122 258 -4 284 298 12 24 chr4 127699021 127699105 -56589557 - L2 LINE L2 0 3313 3231 546 337 6 6 chr4 127699155 127699321 -56589341 - MIR SINE MIR -89 173 8 184 225 0 0 chr4 127699325 127699365 -56589297 - MIR SINE MIR -1 261 222 295 61 73 24 chr4 127699370 127699452 -56589210 + (TA)n Simple_repeat Simple_repeat 1 86 0 359 287 67 27 chr4 127699457 127699607 -56589055 - MIR SINE MIR -57 205 50 420 254 70 42 chr4 127700148 127700290 -56588372 + MER5A DNA MER1_type 4 149 -40 255 340 80 20 chr4 127700313 127700463 -56588199 - L2 LINE L2 -182 3090 2932 777 241 198 0 chr4 127700531 127700743 -56587919 + MLT1G LTR MaLR 3 256 -334 2099 120 3 0 chr4 127700990 127701325 -56587337 - AluSx SINE Alu 0 336 1 266 300 42 0 chr4 127701494 127701614 -56587048 + MER117 DNA MER1_type 30 154 -43 299 289 114 26 chr4 127701928 127702042 -56586620 - MIR3 SINE MIR -6 202 79 401 263 270 0 chr4 127703113 127703265 -56585397 + MIR SINE MIR 68 260 -2 23 0 0 0 chr4 127703987 127704010 -56584652 + AT_rich Low_complexity Low_complexity 1 23 0 3974 30 2 0 chr4 127704358 127704831 -56583831 - L1PA4 LINE L1 -3 6152 5679 11526 22 17 3 chr4 127704831 127706510 -56582152 + L1PA4 LINE L1 3979 5683 -472 376 337 169 0 chr4 127706752 127706924 -56581738 - MIR SINE MIR -26 236 36 4760 126 26 31 chr4 127707226 127708029 -56580633 + L1PA8A LINE L1 2 800 -5075 467 160 0 0 chr4 127708032 127708126 -56580536 + L1PA8A LINE L1 3378 3471 -2990 14372 119 6 9 chr4 127708158 127711158 -56577504 + L1PA8A LINE L1 3437 6434 -12 622 219 0 61 chr4 127711158 127711233 -56577429 - L1MA10 LINE L1 -3 6331 6270 2061 141 0 7 chr4 127711233 127711537 -56577125 - AluSx SINE Alu -9 303 2 622 219 0 61 chr4 127711537 127711625 -56577037 - L1MA10 LINE L1 -64 6270 6178 526 176 19 0 chr4 127711624 127711732 -56576930 + L1MA4A LINE L1 5218 5327 -819 * 1444 129 3 153 chr4 127711756 127712096 -56576566 + L1MA4A LINE L1 5614 5902 -401 2556 138 28 33 chr4 127712098 127712526 -56576136 - MSTB LTR MaLR 0 426 1 1515 208 134 27 chr4 127712684 127713088 -56575574 - L1ME1 LINE L1 -208 5958 5512 2206 141 12 0 chr4 127713934 127714267 -56574395 - MER1B DNA MER1_type 0 337 1 21 0 0 0 chr4 127715000 127715021 -56573641 + AT_rich Low_complexity Low_complexity 1 21 0 601 289 104 63 chr4 127715157 127715707 -56572955 - MLT1G LTR MaLR 0 590 38 21 0 0 0 chr4 127716926 127716947 -56571715 + AT_rich Low_complexity Low_complexity 1 21 0 189 175 0 0 chr4 127718582 127718622 -56570040 + (CAA)n Simple_repeat Simple_repeat 2 41 0 2324 107 0 0 chr4 127718682 127718982 -56569680 - AluSc SINE Alu -5 304 5 22 0 0 0 chr4 127720404 127720426 -56568236 + AT_rich Low_complexity Low_complexity 1 22 0 200 250 0 47 chr4 127720877 127720941 -56567721 - L2 LINE L2 -1 3312 3252 353 301 18 0 chr4 127720967 127721080 -56567582 + MIR SINE MIR 106 220 -42 347 244 26 0 chr4 127722017 127722095 -56566567 + LTR16C LTR ERVL 412 491 0 11071 108 4 9 chr4 127722953 127725376 -56563286 + L1PA8 LINE L1 3742 6167 -5 684 223 71 0 chr4 127725376 127725587 -56563075 - MER33 DNA MER1_type -94 230 5 1624 219 74 32 chr4 127725916 127726387 -56562275 - MER34B LTR ERV1 -64 501 11 14126 36 5 0 chr4 127730259 127731989 -56556673 - L1P LINE L1 -1756 4390 2653 7938 212 16 33 chr4 127731985 127735059 -56553603 - L1P5 LINE L1 -380 5776 2871 * 411 359 134 31 chr4 127735288 127735578 -56553084 - L1M2 LINE L1 -5916 933 614 927 306 57 45 chr4 127735605 127736076 -56552586 - L1M2 LINE L1 -6371 478 2 25 0 0 0 chr4 127737273 127737298 -56551364 + AT_rich Low_complexity Low_complexity 1 25 0 1089 217 22 74 chr4 127737786 127738175 -56550487 + MLT1A2 LTR MaLR 1 363 -11 363 203 0 14 chr4 127738242 127738311 -56550351 + MER58A DNA MER1_type 1 68 -39 959 221 0 0 chr4 127738326 127738498 -56550164 - FAM SINE Alu -3 172 1 762 211 26 0 chr4 127738498 127738650 -56550012 + MER58A DNA MER1_type 53 208 -16 1425 198 114 25 chr4 127739016 127739411 -56549251 + MER63B DNA MER1_type 7 436 0 275 360 40 20 chr4 127739601 127739751 -56548911 - MIR3 SINE MIR -3 205 53 682 283 165 22 chr4 127740206 127740674 -56547988 - L2 LINE L2 -10 3262 2681 180 0 0 0 chr4 127740674 127740694 -56547968 + (TA)n Simple_repeat Simple_repeat 2 21 0 682 283 165 22 chr4 127740694 127740805 -56547857 - L2 LINE L2 -591 2681 2587 565 133 0 0 chr4 127740899 127740982 -56547680 + FRAM SINE Alu 68 150 -26 344 176 27 14 chr4 127741037 127741111 -56547551 + MER5B DNA MER1_type 104 178 0 477 300 20 20 chr4 127741121 127741271 -56547391 - L2 LINE L2 -735 2579 2430 209 91 45 23 chr4 127741427 127741471 -56547191 + (TA)n Simple_repeat Simple_repeat 1 45 0 970 273 158 11 chr4 127741569 127742115 -56546547 - LTR50 LTR ERVL -126 669 44 219 125 0 0 chr4 127742263 127742303 -56546359 + (TC)n Simple_repeat Simple_repeat 1 40 0 1051 297 38 21 chr4 127742510 127742928 -56545734 - ERVL LTR ERVL -384 5380 4956 1115 305 36 5 chr4 127742928 127743490 -56545172 - ERVL LTR ERVL -850 4804 4214 298 306 32 24 chr4 127743521 127743645 -56545017 - ERVL LTR ERVL -1632 4132 4008 4502 126 19 4 chr4 127743697 127744420 -56544242 - L1MA2 LINE L1 0 6304 5571 11965 179 19 13 chr4 127744420 127746715 -56541947 - L1M1 LINE L1 -646 5659 3378 2031 154 73 14 chr4 127746715 127747059 -56541603 - THE1B LTR MaLR 0 364 1 11784 88 11 2 chr4 127747059 127748624 -56540038 - THE1B-int LTR MaLR 0 1580 1 2238 119 73 14 chr4 127748624 127748968 -56539694 - THE1B LTR MaLR 0 364 1 11965 179 19 13 chr4 127748968 127749680 -56538982 - L1M1 LINE L1 -2926 3379 2632 2214 312 32 35 chr4 127749712 127750697 -56537965 - ERVL LTR ERVL -1911 3853 2871 342 276 73 0 chr4 127750992 127751115 -56537547 - MER117 DNA MER1_type -34 163 32 307 274 98 10 chr4 127751143 127751245 -56537417 + MER5A DNA MER1_type 35 145 -44 749 141 5 106 chr4 127751253 127751452 -56537210 + MER67D LTR ERV1 6 184 -330 765 174 0 0 chr4 127751452 127751596 -56537066 + L1MA9 LINE L1 5358 5501 -682 1501 184 143 8 chr4 127751596 127751987 -56536675 + L1MA9 LINE L1 5831 6274 -38 1059 230 107 3 chr4 127752010 127752310 -56536352 + MER67D LTR ERV1 180 510 -4 216 391 0 0 chr4 127752841 127752905 -56535757 + MIR SINE MIR 86 149 -59 208 250 53 105 chr4 127753466 127753542 -56535120 - L2 LINE L2 0 3272 3201 250 288 113 0 chr4 127753665 127753745 -56534917 - L2 LINE L2 -219 3053 2965 1948 190 0 5 chr4 127755294 127755662 -56533000 + MER47A DNA MER2_type 1 366 0 1635 213 94 54 chr4 127755907 127756434 -56532228 - MER77 LTR ERV1 -7 598 54 205 182 0 0 chr4 127756529 127756573 -56532089 + T-rich Low_complexity Low_complexity 1 44 0 322 317 118 21 chr4 127758465 127758568 -56530094 - MIR SINE MIR -2 260 168 186 43 0 0 chr4 127758568 127758591 -56530071 + (TTA)n Simple_repeat Simple_repeat 3 25 0 322 317 118 21 chr4 127758591 127758673 -56529989 - MIR SINE MIR -94 168 57 702 278 167 18 chr4 127758695 127759030 -56529632 + L2 LINE L2 1889 2273 -1041 198 118 0 0 chr4 127759456 127759490 -56529172 + (ATATG)n Simple_repeat Simple_repeat 2 35 0 13623 132 20 29 chr4 127759515 127761918 -56526744 - Tigger1 DNA MER2_type -1 2417 38 2012 143 44 0 chr4 127762454 127762747 -56525915 - AluJb SINE Alu -6 306 1 201 121 0 0 chr4 127762819 127762852 -56525810 + (TG)n Simple_repeat Simple_repeat 2 34 0 4052 212 64 130 chr4 127762996 127763676 -56524986 + L1M2c LINE L1 29 752 -6037 1220 145 0 0 chr4 127763676 127763842 -56524820 + AluJb SINE Alu 5 170 -142 4052 212 64 130 chr4 127763842 127764823 -56523839 + L1M2c LINE L1 752 1735 -5054 1230 186 4 20 chr4 127764823 127765076 -56523586 - MSTA LTR MaLR 0 428 180 2041 102 6 54 chr4 127765093 127765407 -56523255 - AluSx SINE Alu -10 302 4 776 337 44 41 chr4 127765779 127766387 -56522275 - L1PA13 LINE L1 -6177 610 1 21 0 0 0 chr4 127766731 127766752 -56521910 + GC_rich Low_complexity Low_complexity 1 21 0 920 269 191 19 chr4 127767142 127767308 -56521354 - L2 LINE L2 0 3313 3177 1943 189 83 10 chr4 127767308 127767705 -56520957 + MSTB LTR MaLR 1 426 0 920 269 191 19 chr4 127767705 127767958 -56520704 - L2 LINE L2 -136 3177 2822 252 352 33 0 chr4 127768189 127768280 -56520382 - MIR3 SINE MIR -14 194 101 276 256 158 0 chr4 127768310 127768392 -56520270 - MIR SINE MIR -28 234 140 265 269 43 82 chr4 127769554 127769721 -56518941 + L1ME LINE L1 5618 5771 -350 1981 159 0 3 chr4 127769721 127770017 -56518645 + AluSx SINE Alu 1 295 -17 265 269 43 82 chr4 127770017 127770131 -56518531 + L1ME LINE L1 5771 5888 -233 2010 122 3 7 chr4 127770371 127770657 -56518005 + AluSq SINE Alu 1 285 -28 1011 135 0 0 chr4 127770658 127770828 -56517834 + (GA)n Simple_repeat Simple_repeat 1 170 0 185 0 0 39 chr4 127771141 127771167 -56517495 + (CATATA)n Simple_repeat Simple_repeat 2 26 0 24 0 0 0 chr4 127771600 127771624 -56517038 + AT_rich Low_complexity Low_complexity 1 24 0 218 279 57 49 chr4 127772464 127772586 -56516076 - MIR SINE MIR -90 172 50 34 24 0 0 chr4 127773357 127773398 -56515264 + AT_rich Low_complexity Low_complexity 1 41 0 2509 99 6 11 chr4 127773596 127773958 -56514704 + THE1C LTR MaLR 16 375 0 9840 107 26 47 chr4 127773958 127775562 -56513100 + THE1C-int LTR MaLR 1 1571 -9 2691 89 19 11 chr4 127775564 127775936 -56512726 + THE1C LTR MaLR 1 375 0 681 256 60 45 chr4 127776038 127776456 -56512206 - LTR37B LTR ERV1 -37 431 8 301 278 28 38 chr4 127776493 127776748 -56511914 - L1MC/D LINE L1 -301 5820 5579 346 262 0 10 chr4 127777245 127777348 -56511314 + L1MB5 LINE L1 5709 5810 -1998 786 278 196 49 chr4 127777567 127778418 -56510244 - L2 LINE L2 -281 2991 2034 30 59 0 0 chr4 127778671 127778722 -56509940 + AT_rich Low_complexity Low_complexity 1 51 0 2831 174 12 9 chr4 127778865 127779429 -56509233 + L1MB7 LINE L1 5600 6165 -19 796 172 237 29 chr4 127779784 127780092 -56508570 + LTR50 LTR ERVL 1 372 -423 537 181 19 0 chr4 127780104 127780209 -56508453 - L1M4 LINE L1 -366 5808 5702 1682 168 3 3 chr4 127780211 127780503 -56508159 + L1MB5 LINE L1 5874 6165 -9 689 129 81 0 chr4 127780704 127780828 -56507834 - MER3 DNA MER1_type -1 208 75 253 203 31 0 chr4 127780830 127780894 -56507768 + MER52A LTR ERV1 1 66 -1689 241 168 0 17 chr4 127781091 127781161 -56507501 + MER52A LTR ERV1 55 376 -902 6355 209 37 11 chr4 127781352 127782770 -56505892 + MER52A LTR ERV1 365 1755 0 336 200 86 0 chr4 127782770 127782840 -56505822 - MER3 DNA MER1_type -133 76 1 1021 279 92 0 chr4 127784311 127784616 -56504046 + LTR16C LTR ERVL 159 491 0 584 300 182 0 chr4 127784626 127784846 -56503816 - MIR SINE MIR -1 261 2 1035 277 94 26 chr4 127785087 127785196 -56503466 + MLT1H1 LTR MaLR 7 107 -448 3488 70 20 0 chr4 127785196 127785640 -56503022 - MLT2A2 LTR ERVL 0 453 1 1035 277 94 26 chr4 127785640 127785869 -56502793 + MLT1H1 LTR MaLR 107 368 -187 3239 207 57 2 chr4 127785881 127786669 -56501993 + MER97b DNA MER1_type? 32 862 -191 303 177 0 32 chr4 127786818 127786880 -56501782 - Alu SINE Alu -1 301 242 432 225 6 58 chr4 127786887 127787060 -56501602 + MER97c DNA MER1_type? 898 1061 -29 573 243 55 28 chr4 127787073 127787254 -56501408 + MLT1H1 LTR MaLR 370 555 0 1995 153 3 13 chr4 127787551 127787865 -56500797 - AluJb SINE Alu -1 311 1 505 213 56 0 chr4 127787890 127787998 -56500664 - L2 LINE L2 -13 3300 3187 899 136 0 0 chr4 127788154 127788279 -56500383 + AluSg/x SINE Alu 167 291 -21 496 286 0 42 chr4 127788320 127788488 -56500174 - MLT1K LTR MaLR -111 477 317 309 222 0 0 chr4 127788497 127788551 -56500111 + L2 LINE L2 3219 3272 0 2265 107 3 0 chr4 127788687 127788995 -56499667 - AluSq SINE Alu 0 313 5 241 286 0 16 chr4 127789377 127789440 -56499222 - L2 LINE L2 -15 3257 3196 4155 188 68 16 chr4 127789949 127791199 -56497463 + L1MD2 LINE L1 4724 6050 -309 2076 108 0 0 chr4 127791199 127791468 -56497194 + AluSg SINE Alu 35 303 -7 4155 188 68 16 chr4 127791468 127791625 -56497037 + L1MD2 LINE L1 6050 6197 -162 380 179 24 0 chr4 127791638 127791722 -56496940 + L1MD2 LINE L1 6264 6349 -10 2747 35 0 0 chr4 127792041 127792351 -56496311 + AluY SINE Alu 1 310 -1 1447 153 18 0 chr4 127792551 127792798 -56495864 + AluJo SINE Alu 86 336 0 381 305 39 17 chr4 127792834 127792973 -56495689 - MIR SINE MIR -61 147 9 428 232 54 77 chr4 127793197 127793365 -56495297 - MIR SINE MIR -50 212 49 1373 287 47 18 chr4 127793697 127794493 -56494169 - L1ME3A LINE L1 -219 5951 5131 639 283 143 19 chr4 127794561 127795301 -56493361 - L1ME3A LINE L1 -2320 3826 2998 639 125 17 8 chr4 127795333 127795453 -56493209 - L1MA7 LINE L1 -6 6285 6165 522 275 84 28 chr4 127795543 127795827 -56492835 - L1M4 LINE L1 -2838 3308 3009 815 290 79 76 chr4 127795833 127796451 -56492211 - L1M4 LINE L1 -3276 2870 2251 380 37 19 0 chr4 127796454 127796508 -56492154 + (TG)n Simple_repeat Simple_repeat 1 55 0 23 68 0 0 chr4 127796542 127796586 -56492076 + AT_rich Low_complexity Low_complexity 1 44 0 778 288 74 21 chr4 127796884 127797210 -56491452 - L2 LINE L2 -188 3125 2785 1151 182 143 31 chr4 127797463 127797820 -56490842 + MLT2C1 LTR ERVL 1 397 0 2441 78 0 0 chr4 127798335 127798631 -56490031 - AluY SINE Alu -15 296 1 2114 132 11 6 chr4 127799547 127799902 -56488760 - Tigger1 DNA MER2_type -1 2417 2061 2194 97 3 10 chr4 127799904 127800203 -56488459 + AluSq SINE Alu 1 297 -16 375 179 39 0 chr4 127800215 127800293 -56488369 + MER57A LTR ERV1 295 375 -28 1495 142 0 0 chr4 127800296 127800549 -56488113 - Tigger1 DNA MER2_type -341 2077 1825 8010 123 19 11 chr4 127800549 127801751 -56486911 + L1PA15-16 LINE L1 1340 2532 -4317 2092 130 3 3 chr4 127801751 127802059 -56486603 + AluSx SINE Alu 1 308 -4 2451 57 20 0 chr4 127802063 127802359 -56486303 + AluY SINE Alu 1 302 -9 8010 123 19 11 chr4 127802359 127802492 -56486170 + L1PA15-16 LINE L1 2534 2690 -4159 * 40850 34 21 1 chr4 127802487 127808519 -56480143 + L1PA2 LINE L1 1 6155 0 2830 143 83 44 chr4 127808521 127809183 -56479479 + Tigger3(Golem) DNA MER2_type 2340 3027 -2 1380 164 174 3 chr4 127809228 127809533 -56479129 - MLT1A1 LTR MaLR 0 365 9 450 280 96 32 chr4 127809690 127809847 -56478815 + MIR3 SINE MIR 32 198 -10 2230 93 0 35 chr4 127809910 127810220 -56478442 - AluSq SINE Alu -14 299 1 1129 178 58 0 chr4 127810460 127810625 -56478037 - AluJb SINE Alu -16 296 115 266 0 29 0 chr4 127810625 127810659 -56478003 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1129 178 58 0 chr4 127810659 127810701 -56477961 - AluJb SINE Alu -197 115 77 201 326 0 0 chr4 127810701 127810750 -56477912 - L2 LINE L2 -15 3298 3250 505 176 28 0 chr4 127810778 127810886 -56477776 + FLAM_A SINE Alu 22 132 -10 1767 50 0 0 chr4 127812040 127812258 -56476404 - L1PA5 LINE L1 -3 6151 5934 2370 75 7 0 chr4 127813181 127813473 -56475189 - AluSg SINE Alu -16 294 1 1756 192 10 0 chr4 127813766 127814074 -56474588 + AluJo SINE Alu 1 311 -1 37 52 0 0 chr4 127814846 127814904 -56473758 + AT_rich Low_complexity Low_complexity 1 58 0 1581 172 12 0 chr4 127815120 127815370 -56473292 - AluJo SINE Alu -23 289 37 22 35 0 0 chr4 127816437 127816466 -56472196 + AT_rich Low_complexity Low_complexity 1 29 0 359 323 101 30 chr4 127816935 127817133 -56471529 - MIR SINE MIR -48 214 3 2331 71 7 0 chr4 127817493 127817773 -56470889 - AluSp SINE Alu -16 297 16 41 0 0 0 chr4 127817950 127817991 -56470671 + AT_rich Low_complexity Low_complexity 1 41 0 504 278 104 35 chr4 127818401 127818775 -56469887 - LTR16B LTR ERVL 0 464 65 24 67 0 0 chr4 127819504 127819549 -56469113 + AT_rich Low_complexity Low_complexity 1 45 0 24 32 0 0 chr4 127819741 127819772 -56468890 + AT_rich Low_complexity Low_complexity 1 31 0 387 326 110 45 chr4 127819874 127820119 -56468543 - L2 LINE L2 0 3272 3012 475 152 10 10 chr4 127820178 127820277 -56468385 - L1MA6 LINE L1 0 6300 6202 960 53 0 5 chr4 127821092 127821378 -56467284 - AluY SINE Alu 0 332 1 25 0 0 0 chr4 127821733 127821758 -56466904 + AT_rich Low_complexity Low_complexity 1 25 0 350 188 36 62 chr4 127821873 127821985 -56466677 - L1MA10 LINE L1 -1 6333 6225 865 277 127 3 chr4 127821998 127822352 -56466310 + L1MC4 LINE L1 5377 5774 -2034 436 293 5 96 chr4 127822454 127822662 -56466000 + L1MC4 LINE L1 6765 6953 -1089 1947 249 138 65 chr4 127822689 127823078 -56465584 + L1MC4 LINE L1 6274 6633 -1409 1973 223 50 16 chr4 127823078 127823580 -56465082 - LTR40a LTR ERVL 0 519 1 1947 249 138 65 chr4 127823580 127824251 -56464411 + L1MC4 LINE L1 6633 7254 -788 1488 170 23 11 chr4 127824251 127824516 -56464146 + AluJb SINE Alu 1 268 -44 1947 249 138 65 chr4 127824516 127825020 -56463642 + L1MC4 LINE L1 7254 8042 0 2149 117 7 0 chr4 127826439 127826730 -56461932 - AluSx SINE Alu -19 293 1 27 49 0 0 chr4 127827115 127827156 -56461506 + AT_rich Low_complexity Low_complexity 1 41 0 2546 171 25 27 chr4 127827763 127827854 -56460808 - MER70B LTR ERVL -103 475 385 2375 110 3 0 chr4 127827854 127828162 -56460500 + AluSx SINE Alu 1 309 -3 2546 171 25 27 chr4 127828162 127828544 -56460118 - MER70B LTR ERVL -193 385 3 259 314 10 29 chr4 127828787 127828889 -56459773 - L3 LINE CR1 -45 1532 1433 1082 262 86 25 chr4 127828998 127829357 -56459305 + LTR16A LTR ERVL 67 447 -3 397 301 41 0 chr4 127829360 127829483 -56459179 - L3 LINE CR1 -207 1370 1243 194 294 265 20 chr4 127829492 127829594 -56459068 - L2 LINE L2 -1176 2138 2012 1912 217 122 18 chr4 127829699 127830257 -56458405 - MLT1E2 LTR MaLR 0 626 11 230 279 58 64 chr4 127830276 127830448 -56458214 + L2 LINE L2 1245 1415 -1899 1797 204 21 62 chr4 127830454 127830939 -56457723 - MLT1C LTR MaLR 0 467 3 321 346 49 5 chr4 127831241 127831426 -56457236 + L2 LINE L2 1773 1965 -1349 391 261 93 81 chr4 127831598 127831759 -56456903 + L2 LINE L2 2667 2829 -485 3866 154 7 14 chr4 127831822 127832303 -56456359 + L1PB4 LINE L1 5468 5944 -212 2087 131 134 11 chr4 127832303 127832684 -56455978 - MSTA LTR MaLR 0 428 1 3866 154 7 14 chr4 127832684 127832896 -56455766 + L1PB4 LINE L1 5944 6156 0 538 310 141 31 chr4 127833136 127833491 -56455171 - L3 LINE CR1 -611 966 573 355 278 56 33 chr4 127833917 127834097 -56454565 + L2 LINE L2 1513 1696 -1618 1649 127 0 0 chr4 127834408 127834661 -56454001 - L1PA16 LINE L1 -4 6162 5910 574 167 35 9 chr4 127834959 127835073 -56453589 - FLAM_A SINE Alu -3 139 23 475 262 195 16 chr4 127835119 127835566 -56453096 - L1ME4a LINE L1 -6 6115 5589 312 233 204 67 chr4 127835570 127835810 -56452852 + HAL1 LINE L1 483 755 -1752 315 271 12 12 chr4 127836164 127836249 -56452413 + L2 LINE L2 3229 3313 0 347 301 111 92 chr4 127836399 127836994 -56451668 - L1M2 LINE L1 -5421 1428 823 269 235 114 61 chr4 127839483 127839615 -56449047 + MIR SINE MIR 47 185 -77 189 286 39 65 chr4 127839752 127839829 -56448833 - MIR SINE MIR -104 104 30 21 57 0 0 chr4 127840008 127840043 -56448619 + AT_rich Low_complexity Low_complexity 1 35 0 298 279 32 21 chr4 127840115 127840253 -56448409 - MIR SINE MIR -66 196 38 22 35 0 0 chr4 127840906 127840935 -56447727 + AT_rich Low_complexity Low_complexity 1 29 0 510 262 158 0 chr4 127842072 127842236 -56446426 - MIR SINE MIR -14 248 59 442 261 60 10 chr4 127842350 127842503 -56446159 - MER5A DNA MER1_type 0 178 10 277 305 84 46 chr4 127843041 127843303 -56445359 + L2 LINE L2 1324 1595 -1719 4047 105 11 46 chr4 127843304 127843962 -56444700 - MER41B LTR ERV1 0 635 1 26 0 0 0 chr4 127844073 127844099 -56444563 + AT_rich Low_complexity Low_complexity 1 26 0 786 167 87 48 chr4 127844411 127844755 -56443907 + MER34 LTR ERV1 27 433 -109 375 271 37 9 chr4 127844899 127845006 -56443656 - MER5A DNA MER1_type -29 160 51 508 191 21 0 chr4 127845009 127845103 -56443559 + MER34 LTR ERV1 447 542 0 304 332 133 31 chr4 127845632 127845828 -56442834 + MIR SINE MIR 47 262 0 21 0 0 0 chr4 127847326 127847347 -56441315 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 127847789 127847812 -56440850 + AT_rich Low_complexity Low_complexity 1 23 0 934 254 75 16 chr4 127849223 127849542 -56439120 - L1ME2 LINE L1 -9 6155 5818 1470 199 20 14 chr4 127849543 127849835 -56438827 + AluJo SINE Alu 1 294 -18 2171 96 0 10 chr4 127849898 127850189 -56438473 + AluSx SINE Alu 14 301 -11 311 368 112 25 chr4 127850673 127851149 -56437513 + L2 LINE L2 2553 3059 -213 274 118 20 0 chr4 127852541 127852592 -56436070 - L1MD3 LINE L1 -12 7983 7932 1326 106 20 0 chr4 127853614 127853812 -56434850 - L1P5 LINE L1 -500 5654 5453 247 257 40 0 chr4 127855882 127855956 -56432706 + L1MEd LINE L1 1321 1397 -5133 300 286 56 24 chr4 127855980 127856106 -56432556 + HAL1 LINE L1 1455 1584 -923 1173 260 123 3 chr4 127856137 127856502 -56432160 + MLT1J2 LTR MaLR 42 450 0 349 269 101 13 chr4 127856502 127856651 -56432011 + L1MEd LINE L1 1877 2038 -4502 243 172 58 11 chr4 127856731 127856818 -56431844 + (TA)n Simple_repeat Simple_repeat 1 91 0 588 257 114 57 chr4 127857165 127857656 -56431006 + L1MEd LINE L1 2504 3022 -3518 26 30 0 0 chr4 127858127 127858160 -56430502 + AT_rich Low_complexity Low_complexity 1 33 0 24 53 0 0 chr4 127860544 127860582 -56428080 + AT_rich Low_complexity Low_complexity 1 38 0 687 263 240 16 chr4 127861225 127861645 -56427017 + MLT1G1 LTR MaLR 1 478 -64 2232 219 61 0 chr4 127861913 127862389 -56426273 - MLT1D LTR MaLR 0 505 1 277 178 259 15 chr4 127862420 127862555 -56426107 - L1ME4a LINE L1 0 6121 5954 1002 252 50 14 chr4 127863902 127864180 -56424482 - LTR40a LTR ERVL -231 288 1 1318 138 49 0 chr4 127864194 127864419 -56424243 - MER46A DNA MER2_type 0 236 1 660 197 21 28 chr4 127864425 127864567 -56424095 + L2 LINE L2 3173 3313 0 42426 41 24 2 chr4 127864955 127870936 -56417726 - L1PA3 LINE L1 0 6154 5 21 36 0 0 chr4 127871059 127871087 -56417575 + AT_rich Low_complexity Low_complexity 1 28 0 313 278 103 8 chr4 127871157 127871283 -56417379 + MIR3 SINE MIR 64 201 -7 23 0 0 0 chr4 127871448 127871471 -56417191 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr4 127871927 127871957 -56416705 + AT_rich Low_complexity Low_complexity 1 30 0 3814 110 4 17 chr4 127872140 127872676 -56415986 + MER1A DNA MER1_type 1 529 0 2473 146 78 0 chr4 127873509 127873906 -56414756 - MER1A DNA MER1_type -84 445 18 424 214 26 162 chr4 127873906 127874197 -56414465 + L1MC4 LINE L1 7803 8041 -1 239 305 171 26 chr4 127874707 127874976 -56413686 - L2 LINE L2 -575 2739 2432 1237 200 64 3 chr4 127875566 127875861 -56412801 - L1 LINE L1 -912 5234 4922 276 250 0 0 chr4 127875947 127876003 -56412659 - L1MC4 LINE L1 -186 7856 7801 240 105 0 0 chr4 127876004 127876042 -56412620 + Charlie3 DNA MER1_type 1 38 -2672 353 268 98 0 chr4 127876517 127876629 -56412033 - L2 LINE L2 0 3313 3191 184 326 251 29 chr4 127926788 127926963 -56361699 + MIR SINE MIR 28 241 -21 243 252 223 0 chr4 127927131 127927234 -56361428 + L1ME LINE L1 5621 5746 -375 2430 85 3 0 chr4 127927331 127927638 -56361024 + AluSq SINE Alu 1 308 -5 2264 200 68 55 chr4 127928576 127929136 -56359526 - MLT1F1 LTR MaLR 0 567 1 1971 153 7 0 chr4 127929433 127929728 -56358934 + AluJb SINE Alu 1 297 -15 41333 52 5 1 chr4 127929736 127935865 -56352797 + L1PA3 LINE L1 1 6152 -3 25 51 0 0 chr4 127935865 127935904 -56352758 + AT_rich Low_complexity Low_complexity 1 39 0 358 293 14 41 chr4 127937146 127937293 -56351369 - MIR SINE MIR -25 237 95 344 172 8 47 chr4 127937702 127937830 -56350832 + CT-rich Low_complexity Low_complexity 2 124 0 799 264 149 28 chr4 127939346 127939981 -56348681 + L2 LINE L2 2476 3309 -4 243 324 81 27 chr4 127940264 127940422 -56348240 - MIR3 SINE MIR -61 147 3 546 186 119 0 chr4 127941773 127941891 -56346771 + MIR SINE MIR 104 235 -27 1886 157 3 22 chr4 127942072 127942390 -56346272 - AluJb SINE Alu 0 312 1 1565 192 6 50 chr4 127942475 127942798 -56345864 + AluJo SINE Alu 1 309 -3 220 143 12 71 chr4 127942805 127942889 -56345773 + GA-rich Low_complexity Low_complexity 4 82 0 3416 142 18 26 chr4 127943787 127944398 -56344264 - L1MC1 LINE L1 -11 6322 5717 1915 131 10 3 chr4 127944401 127944707 -56343955 - L1MC1 LINE L1 -707 5626 5319 * 7750 158 21 2 chr4 127944705 127945066 -56343596 - L1PB1 LINE L1 0 6151 5798 186 43 0 0 chr4 127945066 127945089 -56343573 + (TA)n Simple_repeat Simple_repeat 1 23 0 7750 158 21 2 chr4 127945089 127947133 -56341529 - L1PB1 LINE L1 -353 5798 3698 1259 226 67 8 chr4 127947240 127947599 -56341063 - L1MC1 LINE L1 -1453 4693 4314 1381 167 0 5 chr4 127947603 127947819 -56340843 + AluSx SINE Alu 5 219 -93 5077 225 36 11 chr4 127947876 127949179 -56339483 - L1MC1 LINE L1 -1889 4257 2922 812 219 11 109 chr4 127949393 127949667 -56338995 - L1MB8 LINE L1 -4 6174 5928 1974 140 15 18 chr4 127949680 127950015 -56338647 - L1MA6 LINE L1 -241 6059 5726 2070 127 3 3 chr4 127950114 127950405 -56338257 + AluSp SINE Alu 1 291 -22 343 67 0 0 chr4 127950426 127950471 -56338191 + Alu SINE Alu 1 45 -254 2183 82 0 4 chr4 127950473 127950753 -56337909 + AluY SINE Alu 18 296 -15 636 72 24 0 chr4 127951369 127951452 -56337210 + AluY SINE Alu 205 289 -22 3164 197 66 97 chr4 127952522 127954038 -56334624 + L1MC5 LINE L1 6424 7911 -50 1212 162 50 50 chr4 127954518 127954796 -56333866 + L1ME1 LINE L1 5539 5816 -350 365 233 0 0 chr4 127954813 127954886 -56333776 + L1ME1 LINE L1 6037 6109 -57 593 182 106 8 chr4 127955052 127955175 -56333487 - L1ME1 LINE L1 -150 6017 5885 882 171 47 33 chr4 127955336 127955547 -56333115 - L1ME1 LINE L1 -235 5931 5718 446 308 87 8 chr4 127955810 127956171 -56332491 - L1MC4a LINE L1 -302 5819 5526 21 0 0 0 chr4 127956460 127956481 -56332181 + AT_rich Low_complexity Low_complexity 1 21 0 574 154 8 131 chr4 127956702 127956832 -56331830 - FRAM SINE Alu -25 151 38 1670 112 20 20 chr4 127956934 127957185 -56331477 + AluSx SINE Alu 45 295 -17 1526 139 7 50 chr4 127959195 127959475 -56329187 + AluSx SINE Alu 44 311 -1 267 122 0 0 chr4 127959679 127959728 -56328934 + (TG)n Simple_repeat Simple_repeat 2 50 0 400 236 102 24 chr4 127959828 127959955 -56328707 - MARNA DNA Mariner -38 548 412 536 291 27 7 chr4 127960235 127960383 -56328279 - L2 LINE L2 0 3272 3122 25 0 0 0 chr4 127960986 127961011 -56327651 + AT_rich Low_complexity Low_complexity 1 25 0 1111 252 81 69 chr4 127961037 127961485 -56327177 + LTR16A LTR ERVL 5 450 0 324 0 0 0 chr4 127961765 127961801 -56326861 + (CA)n Simple_repeat Simple_repeat 1 36 0 28 48 0 0 chr4 127962388 127962430 -56326232 + AT_rich Low_complexity Low_complexity 1 42 0 1712 135 125 16 chr4 127963566 127963870 -56324792 + MER1B DNA MER1_type 1 337 0 243 257 10 79 chr4 127964229 127964330 -56324332 + MIR3 SINE MIR 114 207 -1 746 249 136 26 chr4 127964521 127964794 -56323868 - L2 LINE L2 -23 3290 2988 1338 144 13 31 chr4 127964795 127965024 -56323638 + MER1B DNA MER1_type 42 266 -73 1220 283 129 0 chr4 127965041 127965437 -56323225 - L2 LINE L2 -436 2878 2432 22 35 0 0 chr4 127965535 127965564 -56323098 + AT_rich Low_complexity Low_complexity 1 29 0 340 313 97 103 chr4 127965571 127965891 -56322771 - L2 LINE L2 0 3272 2955 301 337 31 0 chr4 127966385 127966483 -56322179 + polypyrimidine Low_complexity Low_complexity 5 105 0 395 312 176 40 chr4 127966517 127966915 -56321747 + L2 LINE L2 2858 3309 -4 185 218 13 0 chr4 127967050 127967128 -56321534 + (TA)n Simple_repeat Simple_repeat 2 80 0 448 230 104 15 chr4 127967480 127967615 -56321047 + MER5B DNA MER1_type 27 173 -5 22 35 0 0 chr4 127967997 127968026 -56320636 + AT_rich Low_complexity Low_complexity 1 29 0 316 297 45 9 chr4 127968910 127969021 -56319641 + MIR3 SINE MIR 62 176 -32 4791 75 20 0 chr4 127969043 127969683 -56318979 - L1PA10 LINE L1 0 6168 5516 22213 178 28 22 chr4 127969783 127974861 -56313801 - L1P3 LINE L1 -1302 5159 12 205 182 0 0 chr4 127975086 127975119 -56313543 + (TATATG)n Simple_repeat Simple_repeat 4 36 0 1868 152 3 14 chr4 127975179 127975475 -56313187 + AluJo SINE Alu 1 293 -19 2302 97 0 10 chr4 127975628 127975928 -56312734 + AluSg SINE Alu 1 297 -13 1264 142 19 77 chr4 127976495 127976755 -56311907 + AluSq SINE Alu 1 245 -68 425 153 12 24 chr4 127976863 127976948 -56311714 + AluSg/x SINE Alu 208 291 -18 216 250 0 0 chr4 127978008 127978056 -56310606 + MIR SINE MIR 215 262 0 690 257 193 18 chr4 127978383 127978714 -56309948 - L2 LINE L2 0 3313 2925 1609 178 10 27 chr4 127978855 127979148 -56309514 + AluJo SINE Alu 3 290 -22 180 345 138 21 chr4 127979547 127979692 -56308970 - L2 LINE L2 -528 2786 2625 2070 106 32 3 chr4 127979703 127979986 -56308676 + AluSx SINE Alu 1 291 -21 234 203 149 0 chr4 127980305 127980379 -56308283 + L1MC/D LINE L1 5806 5890 -1918 1253 176 138 5 chr4 127980478 127980889 -56307773 + Charlie1b DNA MER1_type 6 473 -50 1191 153 19 37 chr4 127980889 127981104 -56307558 - AluJo SINE Alu -22 290 80 316 172 0 47 chr4 127981132 127981196 -56307466 + Charlie1b DNA MER1_type 462 522 -1 408 236 76 89 chr4 127981245 127981402 -56307260 - MER5B DNA MER1_type -23 155 1 292 182 18 0 chr4 127982782 127982837 -56305825 + AluJ/FRAM SINE Alu 231 286 -16 245 100 0 186 chr4 127982976 127983046 -56305616 + MER96B DNA MER1_type? 44 100 -317 1560 136 86 21 chr4 127983046 127983326 -56305336 + AluSx SINE Alu 1 298 -14 382 152 22 54 chr4 127983332 127983424 -56305238 + LTR9 LTR ERV1 438 526 -86 495 148 199 23 chr4 127983450 127983626 -56305036 + MER96B DNA MER1_type? 93 299 -118 1105 237 77 57 chr4 127983886 127984202 -56304460 + MER20B DNA MER1_type 138 465 -318 1072 142 123 5 chr4 127984202 127984413 -56304249 - MER46A DNA MER2_type 0 236 1 1105 237 77 57 chr4 127984413 127984497 -56304165 + MER20B DNA MER1_type 465 546 -237 2150 122 10 0 chr4 127985218 127985521 -56303141 + AluSx SINE Alu 3 308 -4 1611 241 149 22 chr4 127985677 127986280 -56302382 + Charlie7 DNA MER1_type 44 723 -1889 409 323 141 23 chr4 127986311 127986574 -56302088 + L2 LINE L2 3015 3308 -5 373 152 93 40 chr4 127986576 127986727 -56301935 + Charlie7 DNA MER1_type 2437 2595 -17 2451 11 0 0 chr4 127986807 127987111 -56301551 - AluY SINE Alu 0 320 17 637 259 45 27 chr4 127987518 127987738 -56300924 + MIR SINE MIR 29 252 -10 1578 161 13 74 chr4 127988063 127988374 -56300288 - AluJb SINE Alu -20 292 1 9530 180 51 32 chr4 127988374 127990906 -56297756 - L1PA15-16 LINE L1 -3272 3577 1002 5217 170 114 30 chr4 127990905 127992155 -56296507 - L1 LINE L1 -1656 4490 3092 * 2852 158 27 4 chr4 127992155 127992641 -56296021 + LOR1a LTR ERV1 1 497 0 5217 170 114 30 chr4 127992641 127992935 -56295727 - L1 LINE L1 -3054 3092 2824 1769 177 0 19 chr4 127993105 127993422 -56295240 - AluJo SINE Alu -1 311 1 226 240 100 30 chr4 127993665 127993765 -56294897 + MIR SINE MIR 154 260 -2 488 327 31 27 chr4 127995927 127995976 -56292686 + MIR SINE MIR 29 76 -186 5770 108 35 36 chr4 127995976 127997716 -56290946 - L1PA14 LINE L1 -3 6158 4397 488 327 31 27 chr4 127997716 127997889 -56290773 + MIR SINE MIR 76 252 -10 1627 199 75 61 chr4 127997961 127998389 -56290273 - MER77 LTR ERV1 -8 597 164 2400 257 53 24 chr4 127998419 127999587 -56289075 + L1M3a LINE L1 302 1449 -4516 1058 131 0 0 chr4 127999642 127999787 -56288875 + AluSc SINE Alu 7 151 -158 868 89 0 0 chr4 127999787 127999898 -56288764 + AluSg/x SINE Alu 189 299 -13 495 169 0 182 chr4 127999898 128000052 -56288610 + FLAM_C SINE Alu 1 126 -17 1136 239 110 6 chr4 128000071 128000426 -56288236 + L1M3a LINE L1 1473 1864 -4171 450 161 69 0 chr4 128000431 128000518 -56288144 - Tigger5 DNA MER2_type 0 2323 2231 308 250 14 0 chr4 128000565 128000637 -56288025 - Tigger5 DNA MER2_type 0 2323 2251 12080 189 81 32 chr4 128000754 128001197 -56287465 + L1MA7 LINE L1 2033 2453 -4074 7587 26 6 0 chr4 128001197 128002752 -56285910 + L1PA5 LINE L1 4593 6153 -1 12080 189 81 32 chr4 128002752 128005926 -56282736 + L1MA7 LINE L1 2453 5892 -635 2299 98 3 0 chr4 128005926 128006222 -56282440 + AluSx SINE Alu 1 297 -15 12080 189 81 32 chr4 128006222 128006886 -56281776 + L1MA7 LINE L1 5892 6522 -5 1546 174 99 22 chr4 128006950 128007312 -56281350 + L1MB4 LINE L1 5433 5822 -537 5708 171 27 11 chr4 128007328 128008050 -56280612 - L1PA16 LINE L1 -24 6142 5433 2690 92 0 11 chr4 128008050 128008409 -56280253 - THE1A LTR MaLR 0 355 1 5708 171 27 11 chr4 128008409 128009712 -56278950 - L1PA16 LINE L1 -733 5433 4081 1108 158 60 60 chr4 128009729 128010014 -56278648 + L1MB4 LINE L1 5896 6180 0 * 1288 204 229 5 chr4 128010011 128010456 -56278206 + L1MD2 LINE L1 5814 6358 -1 248 300 44 0 chr4 128010479 128010569 -56278093 - MIR SINE MIR -58 204 111 1482 52 6 0 chr4 128010932 128011105 -56277557 + AluY SINE Alu 1 174 -137 348 186 21 72 chr4 128011350 128011447 -56277215 - MER94 DNA DNA -40 94 3 2308 151 56 7 chr4 128012344 128012774 -56275888 + L1MB8 LINE L1 5724 6174 -4 2436 56 0 20 chr4 128012811 128013116 -56275546 + AluY SINE Alu 1 299 -12 568 82 0 0 chr4 128013207 128013280 -56275382 + AluSg/x SINE Alu 218 290 -19 243 26 0 53 chr4 128013942 128013980 -56274682 + MADE1 DNA Mariner 1 36 -44 984 264 129 33 chr4 128014871 128015329 -56273333 - HAL1 LINE L1 -698 1809 1308 344 294 41 37 chr4 128015420 128015665 -56272997 - HAL1 LINE L1 -2206 301 56 345 254 173 27 chr4 128015802 128015987 -56272675 - L2 LINE L2 -88 3225 3014 2129 123 7 0 chr4 128016332 128016640 -56272022 - AluSg SINE Alu 0 310 1 207 0 0 0 chr4 128016663 128016686 -56271976 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 670 164 0 0 chr4 128016690 128016794 -56271868 - AluJo SINE Alu -30 282 179 881 161 0 7 chr4 128016794 128016937 -56271725 - AluJo SINE Alu -170 142 1 22 0 0 0 chr4 128017478 128017500 -56271162 + AT_rich Low_complexity Low_complexity 1 22 0 494 74 0 25 chr4 128018012 128018093 -56270569 + L1PB1 LINE L1 6071 6149 -2 28 0 0 0 chr4 128018123 128018151 -56270511 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr4 128018308 128018338 -56270324 + AT_rich Low_complexity Low_complexity 1 30 0 1097 146 108 9 chr4 128019535 128019747 -56268915 + MER46A DNA MER2_type 4 236 0 200 252 301 0 chr4 128019757 128019860 -56268802 - L2 LINE L2 0 3313 3180 320 240 70 20 chr4 128020126 128020226 -56268436 - MIR SINE MIR -21 241 137 587 202 30 84 chr4 128020400 128020519 -56268143 + L1MC4 LINE L1 7721 7826 -216 2385 83 3 0 chr4 128020519 128020821 -56267841 + AluY SINE Alu 1 303 -8 587 202 30 84 chr4 128020821 128020904 -56267758 + L1MC4 LINE L1 7826 7912 -130 1896 136 79 16 chr4 128020921 128021121 -56267541 - MLT1B LTR MaLR 0 390 204 2174 119 3 3 chr4 128021121 128021431 -56267231 - AluSx SINE Alu -2 310 1 1896 136 79 16 chr4 128021431 128021597 -56267065 - MLT1B LTR MaLR -186 204 1 1466 299 99 18 chr4 128021708 128022914 -56265748 - L1M4 LINE L1 -1925 4221 2918 2050 160 0 3 chr4 128022945 128023257 -56265405 - AluJb SINE Alu -1 311 1 22 88 0 0 chr4 128023984 128024041 -56264621 + AT_rich Low_complexity Low_complexity 1 57 0 26 30 0 0 chr4 128025317 128025350 -56263312 + AT_rich Low_complexity Low_complexity 1 33 0 1210 175 0 61 chr4 128026315 128026578 -56262084 + AluJo SINE Alu 48 294 -18 364 317 105 23 chr4 128026810 128027116 -56261546 + L1MEd LINE L1 512 842 -5277 357 287 121 38 chr4 128027159 128027459 -56261203 + L1MEd LINE L1 1003 1417 -1073 1713 175 70 3 chr4 128027623 128027938 -56260724 - MER1B DNA MER1_type -1 336 1 443 219 23 47 chr4 128028386 128028514 -56260148 + LTR25 LTR ERV1 232 356 -438 265 247 11 45 chr4 128028556 128028645 -56260017 + MER61E LTR ERV1 80 165 -404 876 155 65 6 chr4 128028694 128028862 -56259800 + MER61E LTR ERV1 341 518 -51 611 270 249 14 chr4 128028946 128029407 -56259255 + L1MEd LINE L1 2955 3306 -2823 2398 76 7 0 chr4 128029407 128029711 -56258951 - AluSp SINE Alu -7 306 1 611 270 249 14 chr4 128029711 128029985 -56258677 + L1MEd LINE L1 3306 3863 -2266 386 308 101 17 chr4 128030139 128030376 -56258286 + L1MEd LINE L1 4050 4306 -1823 628 229 114 31 chr4 128030396 128030623 -56258039 - MIR SINE MIR -4 258 13 1821 162 10 14 chr4 128035610 128035900 -56252762 - AluJo SINE Alu -23 289 1 27 0 0 0 chr4 128036518 128036545 -56252117 + AT_rich Low_complexity Low_complexity 1 27 0 276 244 183 0 chr4 128037031 128037113 -56251549 - MER58A DNA MER1_type -10 97 1 26 50 0 0 chr4 128037205 128037245 -56251417 + AT_rich Low_complexity Low_complexity 1 40 0 22 70 0 0 chr4 128037381 128037424 -56251238 + AT_rich Low_complexity Low_complexity 1 43 0 282 253 121 0 chr4 128037604 128037695 -56250967 + MER103 DNA DNA 55 156 -10 985 173 13 65 chr4 128037749 128037980 -56250682 + MER20 DNA MER1_type 1 219 0 2484 60 0 7 chr4 128038495 128038794 -56249868 + AluY SINE Alu 1 297 -14 254 388 8 16 chr4 128039746 128039867 -56248795 + L2 LINE L2 2302 2421 -893 1166 148 72 94 chr4 128039916 128039973 -56248689 - MER33 DNA MER1_type -2261 324 267 1713 130 93 4 chr4 128039973 128040243 -56248419 + AluJb SINE Alu 1 294 -18 1166 148 72 94 chr4 128040243 128040394 -56248268 - MER33 DNA MER1_type -2318 267 123 1216 87 33 16 chr4 128040394 128040577 -56248085 + MER30B DNA MER1_type 1 186 -4 1166 148 72 94 chr4 128040577 128040698 -56247964 - MER33 DNA MER1_type -2462 123 1 371 308 71 22 chr4 128040959 128041141 -56247521 + L2 LINE L2 3123 3313 0 608 195 157 32 chr4 128041569 128041754 -56246908 + MER3 DNA MER1_type 2 209 0 1142 261 91 43 chr4 128041777 128042306 -56246356 - L2 LINE L2 -95 3218 2665 601 238 122 0 chr4 128042693 128042865 -56245797 - MIR SINE MIR -13 249 57 207 0 0 0 chr4 128043390 128043413 -56245249 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 27 0 0 0 chr4 128043453 128043480 -56245182 + AT_rich Low_complexity Low_complexity 1 27 0 807 186 91 32 chr4 128044331 128044551 -56244111 - MER46A DNA MER2_type 0 236 4 2155 209 26 46 chr4 128045509 128046136 -56242526 + L1MB7 LINE L1 5572 6174 -10 21 36 0 0 chr4 128046714 128046742 -56241920 + AT_rich Low_complexity Low_complexity 1 28 0 2211 76 0 0 chr4 128046761 128047037 -56241625 - AluY SINE Alu -12 299 24 207 184 0 0 chr4 128047263 128047301 -56241361 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 239 265 255 0 chr4 128047614 128047712 -56240950 + L2 LINE L2 3191 3313 0 674 244 135 22 chr4 128048521 128048750 -56239912 - MIR SINE MIR 0 262 8 406 255 98 0 chr4 128048919 128049021 -56239641 + L2 LINE L2 3197 3308 -5 1447 156 36 81 chr4 128049335 128049642 -56239020 + AluJo SINE Alu 1 293 -19 237 65 0 0 chr4 128049653 128049684 -56238978 + (TATG)n Simple_repeat Simple_repeat 2 32 0 306 262 55 0 chr4 128049894 128050008 -56238654 - L1M4 LINE L1 -302 5819 5708 607 157 0 28 chr4 128050490 128050598 -56238064 + FRAM SINE Alu 49 153 -23 357 24 0 0 chr4 128050618 128050660 -56238002 + (TG)n Simple_repeat Simple_repeat 2 43 0 841 267 69 9 chr4 128051106 128051338 -56237324 + MIR SINE MIR 17 262 0 204 75 38 38 chr4 128052260 128052313 -56236349 + T-rich Low_complexity Low_complexity 2 54 0 21 36 0 0 chr4 128052684 128052712 -56235950 + AT_rich Low_complexity Low_complexity 1 28 0 25 65 0 0 chr4 128053309 128053355 -56235307 + AT_rich Low_complexity Low_complexity 1 46 0 2149 112 0 0 chr4 128053477 128053762 -56234900 + AluSx SINE Alu 1 285 -27 306 0 0 0 chr4 128053762 128053796 -56234866 + (CA)n Simple_repeat Simple_repeat 2 35 0 22 35 0 0 chr4 128055110 128055139 -56233523 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 128055354 128055382 -56233280 + AT_rich Low_complexity Low_complexity 1 28 0 437 312 75 22 chr4 128055420 128055682 -56232980 - L1ME LINE L1 -335 5786 5498 610 224 92 53 chr4 128056567 128056795 -56231867 + L1MC4 LINE L1 7805 8041 -1 991 150 142 51 chr4 128057495 128057748 -56230914 - MER2 DNA MER2_type 0 345 70 415 148 0 0 chr4 128057754 128057815 -56230847 + FLAM SINE Alu 56 116 -27 1122 139 0 12 chr4 128057943 128058109 -56230553 + AluSg/x SINE Alu 128 291 -21 730 154 19 1 chr4 128059526 128059648 -56229014 - MLT1C LTR MaLR 0 467 251 1790 170 3 3 chr4 128059653 128059942 -56228720 + AluJo SINE Alu 3 291 -21 220 275 31 131 chr4 128060313 128060473 -56228189 + MIR SINE MIR 26 169 -93 2551 56 0 0 chr4 128061302 128061607 -56227055 + AluY SINE Alu 1 305 -6 236 53 26 0 chr4 128061814 128061852 -56226810 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr4 128061868 128061889 -56226773 + AT_rich Low_complexity Low_complexity 1 21 0 2067 113 7 7 chr4 128062817 128063118 -56225544 - AluY SINE Alu -10 301 1 2216 105 3 0 chr4 128063743 128064039 -56224623 - AluSg SINE Alu -13 297 1 375 208 287 0 chr4 128064580 128064681 -56223981 + FLAM_A SINE Alu 2 131 -2 407 312 56 71 chr4 128064811 128065293 -56223369 - L2 LINE L2 0 3272 2786 198 279 211 29 chr4 128065324 128065428 -56223234 - L2 LINE L2 -5 3308 3186 1793 213 157 25 chr4 128065523 128066134 -56222528 + HsTC2a DNA Tc2 5 696 -48 1948 97 0 8 chr4 128066244 128066502 -56222160 - AluSg SINE Alu -18 292 37 1292 50 0 0 chr4 128067022 128067183 -56221479 - L1PA7 LINE L1 0 6154 5994 1175 108 70 24 chr4 128067855 128068068 -56220594 + L1PA13 LINE L1 5941 6163 0 3077 177 64 60 chr4 128068653 128069414 -56219248 - L1MB8 LINE L1 0 6178 5415 22 0 0 0 chr4 128070118 128070140 -56218522 + AT_rich Low_complexity Low_complexity 1 22 0 392 287 96 37 chr4 128070693 128070881 -56217781 - MIR SINE MIR -59 203 5 345 383 85 0 chr4 128070898 128071086 -56217576 - MIR SINE MIR -14 248 45 389 105 105 0 chr4 128071117 128071193 -56217469 - L1MB8 LINE L1 0 6178 6095 3041 183 93 20 chr4 128071209 128071904 -56216758 - L1MB4 LINE L1 -26 6154 5409 1746 188 0 0 chr4 128072319 128072617 -56216045 - AluJb SINE Alu -8 304 7 3631 129 32 20 chr4 128072892 128073552 -56215110 - L1MA8 LINE L1 -4 6287 5620 2373 70 0 13 chr4 128074029 128074327 -56214335 + AluY SINE Alu 1 294 -17 441 227 265 0 chr4 128074393 128074525 -56214137 - MER5A DNA MER1_type -14 175 9 269 264 11 22 chr4 128074788 128074879 -56213783 + AluSp SINE Alu 108 197 -106 1641 171 38 3 chr4 128075149 128075436 -56213226 + AluJo SINE Alu 1 297 -15 702 205 59 36 chr4 128075498 128075727 -56212935 + L1MD3 LINE L1 7527 7992 -3 761 246 66 9 chr4 128077047 128077258 -56211404 - MER58A DNA MER1_type 0 224 2 465 356 124 4 chr4 128077361 128077586 -56211076 - MIR SINE MIR -3 259 8 1300 267 224 14 chr4 128077931 128078798 -56209864 - L2 LINE L2 -14 3299 2244 335 287 23 0 chr4 128078833 128078920 -56209742 - L2 LINE L2 -1214 2100 2012 22 35 0 0 chr4 128079939 128079968 -56208694 + AT_rich Low_complexity Low_complexity 1 29 0 1989 143 3 10 chr4 128080242 128080549 -56208113 + AluJo SINE Alu 1 305 -7 394 271 130 68 chr4 128080549 128080841 -56207821 + L1ME4a LINE L1 5732 6041 -80 21 57 0 0 chr4 128083534 128083569 -56205093 + AT_rich Low_complexity Low_complexity 1 35 0 2184 100 0 3 chr4 128084445 128084744 -56203918 + AluSx SINE Alu 1 298 -14 1871 153 11 0 chr4 128084827 128085109 -56203553 + AluJb SINE Alu 1 285 -27 2394 66 0 0 chr4 128085119 128085420 -56203242 + AluY SINE Alu 9 309 -2 1913 137 3 33 chr4 128085968 128086275 -56202387 - AluSx SINE Alu -14 298 1 1900 120 33 23 chr4 128086828 128087128 -56201534 - AluSx SINE Alu -9 303 1 1573 90 0 5 chr4 128088330 128088541 -56200121 + AluSx SINE Alu 1 210 -102 1324 99 21 21 chr4 128088542 128088734 -56199928 + AluSc SINE Alu 102 293 -16 1964 96 0 15 chr4 128088994 128089264 -56199398 + AluSx SINE Alu 35 300 -12 267 105 0 0 chr4 128090757 128090795 -56197867 + Alu SINE Alu 5 42 -266 1439 75 0 40 chr4 128090797 128090998 -56197664 + AluSg SINE Alu 5 197 -113 180 0 0 0 chr4 128090998 128091018 -56197644 + (A)n Simple_repeat Simple_repeat 1 20 0 951 129 20 7 chr4 128091304 128091451 -56197211 + AluJb SINE Alu 1 149 -163 1003 131 24 63 chr4 128091682 128091888 -56196774 + L1MA4A LINE L1 6086 6283 -20 21 0 0 0 chr4 128091899 128091920 -56196742 + AT_rich Low_complexity Low_complexity 1 21 0 205 182 0 0 chr4 128092104 128092137 -56196525 + (TATG)n Simple_repeat Simple_repeat 4 36 0 203 273 250 0 chr4 128092160 128092248 -56196414 + L2 LINE L2 3203 3312 -1 4052 233 27 78 chr4 128092423 128094035 -56194627 + L1PA15-16 LINE L1 34 1260 -5589 2019 215 121 23 chr4 128094046 128094706 -56193956 - MER50 LTR ERV1 0 734 10 10518 199 45 64 chr4 128094722 128095649 -56193013 + L1PB4 LINE L1 909 1852 -5007 207 0 0 0 chr4 128095649 128095672 -56192990 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 10518 199 45 64 chr4 128095672 128095762 -56192900 + L1PB4 LINE L1 1852 1942 -4917 337 86 0 17 chr4 128095762 128095820 -56192842 + Alu SINE Alu 246 302 0 10518 199 45 64 chr4 128095820 128097243 -56191419 + L1PB4 LINE L1 1942 3391 -3468 207 0 0 0 chr4 128097243 128097266 -56191396 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 10518 199 45 64 chr4 128097266 128097323 -56191339 + L1PB4 LINE L1 3391 3448 -3411 2099 117 7 17 chr4 128097323 128097622 -56191040 + AluSq SINE Alu 3 298 -15 10518 199 45 64 chr4 128097622 128098245 -56190417 + L1PB4 LINE L1 3448 4081 -2778 1843 157 0 39 chr4 128098245 128098557 -56190105 + AluJb SINE Alu 1 300 -12 10518 199 45 64 chr4 128098557 128100281 -56188381 + L1PB4 LINE L1 4081 5837 -1022 2132 121 0 10 chr4 128100281 128100588 -56188074 - AluSq SINE Alu -9 304 1 10518 199 45 64 chr4 128100588 128101583 -56187079 + L1PB4 LINE L1 5837 6746 -113 1815 226 43 70 chr4 128101583 128102212 -56186450 + LTR9 LTR ERV1 1 612 0 10518 199 45 64 chr4 128102212 128102324 -56186338 + L1PB4 LINE L1 6746 6859 0 1716 189 0 7 chr4 128102331 128102617 -56186045 - AluJb SINE Alu -28 284 1 48 18 0 0 chr4 128102617 128102672 -56185990 + AT_rich Low_complexity Low_complexity 1 55 0 479 257 44 44 chr4 128102845 128103160 -56185502 + L1M4 LINE L1 3612 3926 -2220 924 262 102 16 chr4 128103190 128103495 -56185167 + L2 LINE L2 2570 2900 -414 2120 103 34 0 chr4 128103510 128103802 -56184860 + AluY SINE Alu 1 302 -9 410 96 22 176 chr4 128153990 128154126 -56134536 + L1MB8 LINE L1 6058 6172 -6 2080 126 13 13 chr4 128154136 128154446 -56134216 - AluSx SINE Alu -2 310 1 2162 113 0 17 chr4 128154513 128154806 -56133856 - AluSx SINE Alu -16 296 9 233 261 0 29 chr4 128155380 128155449 -56133213 + MIR SINE MIR 124 190 -72 1769 165 0 62 chr4 128155555 128155706 -56132956 + AluJb SINE Alu 1 123 -189 2231 104 7 0 chr4 128155706 128156005 -56132657 + AluSq SINE Alu 1 301 -12 1769 165 0 62 chr4 128156005 128156174 -56132488 + AluJb SINE Alu 123 301 -11 216 276 98 81 chr4 128156570 128156693 -56131969 + L2 LINE L2 3189 3313 0 2385 93 0 3 chr4 128156860 128157161 -56131501 - AluSg SINE Alu -10 300 1 634 100 11 0 chr4 128157371 128157461 -56131201 - AluS SINE Alu -222 91 1 2022 103 43 13 chr4 128157482 128157784 -56130878 - AluSx SINE Alu -1 311 1 587 149 0 0 chr4 128157808 128157895 -56130767 - AluSg/x SINE Alu -38 274 188 2238 105 0 3 chr4 128157919 128158215 -56130447 - AluSx SINE Alu -17 295 1 303 335 129 6 chr4 128158221 128158391 -56130271 - MIR SINE MIR -70 192 2 24 0 0 0 chr4 128158420 128158444 -56130218 + AT_rich Low_complexity Low_complexity 1 24 0 1764 115 48 15 chr4 128158882 128159151 -56129511 + AluSx SINE Alu 1 278 -34 239 143 0 0 chr4 128159161 128159227 -56129435 + Alu SINE Alu 248 313 0 1726 157 34 14 chr4 128159242 128159535 -56129127 + AluSx SINE Alu 1 299 -13 299 169 0 0 chr4 128159646 128159705 -56128957 - AluS SINE Alu -244 59 1 2395 167 52 27 chr4 128160239 128160257 -56128405 + L1M3 LINE L1 5116 5132 -1051 1982 146 3 0 chr4 128160257 128160551 -56128111 + AluSx SINE Alu 1 295 -17 2395 167 52 27 chr4 128160551 128161192 -56127470 + L1M3 LINE L1 5132 5783 -400 1944 119 0 4 chr4 128161205 128161482 -56127180 + AluSg1 SINE Alu 24 299 -10 373 210 0 12 chr4 128161554 128161635 -56127027 + MER34B LTR ERV1 46 125 -440 1980 101 36 4 chr4 128161759 128162037 -56126625 + AluY SINE Alu 1 287 -24 37 23 0 0 chr4 128162039 128162083 -56126579 + AT_rich Low_complexity Low_complexity 1 44 0 2256 63 0 0 chr4 128163488 128163809 -56124853 + AluY SINE Alu 15 335 0 23 33 0 0 chr4 128164331 128164361 -56124301 + AT_rich Low_complexity Low_complexity 1 30 0 377 122 71 61 chr4 128164630 128164728 -56123934 + MER53 DNA DNA 91 189 0 328 253 13 13 chr4 128164730 128164805 -56123857 - MER5A DNA MER1_type -104 85 11 846 165 128 16 chr4 128164823 128165011 -56123651 - MER3 DNA MER1_type 0 209 1 35 24 0 0 chr4 128165082 128165124 -56123538 + AT_rich Low_complexity Low_complexity 1 42 0 2042 71 74 25 chr4 128165841 128166124 -56122538 + AluSc SINE Alu 1 297 -12 1707 137 19 15 chr4 128166432 128166702 -56121960 - AluSx SINE Alu -2 310 40 1940 159 7 3 chr4 128167154 128167455 -56121207 + AluJb SINE Alu 1 302 -10 27 29 0 0 chr4 128167484 128167518 -56121144 + AT_rich Low_complexity Low_complexity 1 34 0 337 306 47 47 chr4 128168270 128168440 -56120222 - L1ME4a LINE L1 -112 6009 5840 293 109 0 0 chr4 128168522 128168577 -56120085 - L1MB4 LINE L1 0 6180 6126 534 240 34 7 chr4 128168711 128168857 -56119805 + AluSg/x SINE Alu 159 308 -2 2395 122 3 21 chr4 128168893 128169279 -56119383 + Tigger3(Golem) DNA MER2_type 2647 3025 -4 339 216 72 18 chr4 128169288 128169399 -56119263 + L1MC5 LINE L1 7785 7901 -60 315 291 37 0 chr4 128169430 128169643 -56119019 + L1ME LINE L1 2869 3089 -3057 1934 146 19 16 chr4 128169643 128170006 -56118656 + L1MB4 LINE L1 5711 6074 -106 1909 129 53 6 chr4 128170008 128170519 -56118143 + LTR43 LTR ERV1 1 576 -26 644 204 8 23 chr4 128170520 128170652 -56118010 + AluJo SINE Alu 85 214 -98 370 297 58 0 chr4 128170653 128170791 -56117871 + L1MC5 LINE L1 7768 7913 -48 2460 38 3 0 chr4 128170839 128171153 -56117509 + AluY SINE Alu 1 311 0 348 249 56 52 chr4 128171161 128171394 -56117268 + L1ME LINE L1 4999 5232 -914 233 316 0 0 chr4 128171395 128171452 -56117210 + MIR SINE MIR 206 262 0 23 54 0 0 chr4 128172080 128172117 -56116545 + AT_rich Low_complexity Low_complexity 1 37 0 386 265 33 59 chr4 128172117 128172193 -56116469 + L1ME LINE L1 5197 5273 -933 2156 93 3 19 chr4 128172193 128172504 -56116158 - AluY SINE Alu -5 306 1 386 265 33 59 chr4 128172504 128172657 -56116005 + L1ME LINE L1 5273 5427 -779 263 207 171 0 chr4 128172657 128172746 -56115916 - AluJ/FLAM SINE Alu -214 88 1 608 269 129 6 chr4 128172755 128173073 -56115589 + L1ME LINE L1 5455 5812 -358 27 62 0 0 chr4 128173320 128173368 -56115294 + AT_rich Low_complexity Low_complexity 1 48 0 1303 219 77 4 chr4 128173519 128173793 -56114869 + AluSx SINE Alu 16 309 -3 689 182 24 53 chr4 128174321 128174491 -56114171 + MER106B DNA MER1_type 895 1059 0 246 156 0 0 chr4 128174677 128174722 -56113940 + (TA)n Simple_repeat Simple_repeat 1 45 0 323 213 53 0 chr4 128175001 128175076 -56113586 + MIR SINE MIR 177 255 -7 331 336 27 9 chr4 128175190 128175300 -56113362 - L2 LINE L2 -12 3260 3149 2205 110 3 0 chr4 128175632 128175922 -56112740 - AluSq SINE Alu -22 291 1 377 293 28 0 chr4 128175952 128176058 -56112604 + MIR SINE MIR 85 193 -69 1724 129 103 4 chr4 128176573 128176844 -56111818 + AluSq SINE Alu 1 298 -15 2253 108 0 3 chr4 128177097 128177393 -56111269 + AluSg SINE Alu 1 295 -15 784 150 16 8 chr4 128177551 128177678 -56110984 - FLAM_A SINE Alu -4 129 2 1682 150 3 97 chr4 128178813 128179153 -56109509 - AluJb SINE Alu -4 308 1 899 215 0 0 chr4 128179184 128179342 -56109320 + FAM SINE Alu 1 158 -17 1957 117 0 28 chr4 128179454 128179784 -56108878 - AluSq SINE Alu 0 324 3 1750 162 7 26 chr4 128180079 128180387 -56108275 - AluJo SINE Alu -10 302 1 2121 131 3 10 chr4 128180794 128181106 -56107556 + AluSx SINE Alu 1 310 -2 1399 149 14 0 chr4 128181271 128181485 -56107177 + AluSq SINE Alu 1 217 -96 1889 126 11 0 chr4 128181485 128181755 -56106907 + AluSx SINE Alu 27 299 -13 208 234 63 165 chr4 128181764 128181922 -56106740 - L2 LINE L2 -221 3051 2910 324 0 0 0 chr4 128182024 128182060 -56106602 + (CA)n Simple_repeat Simple_repeat 2 37 0 193 356 23 0 chr4 128182101 128182188 -56106474 - L2 LINE L2 -1213 2101 2013 304 202 20 81 chr4 128182194 128182293 -56106369 + MSTC LTR MaLR 1 93 -303 1107 172 40 9 chr4 128182296 128182523 -56106139 + MER50 LTR ERV1 1 234 -500 * 1475 139 7 40 chr4 128182521 128182794 -56105868 + MER50 LTR ERV1 433 696 -38 1895 133 67 3 chr4 128182814 128183130 -56105532 + MSTC LTR MaLR 93 428 0 353 287 69 43 chr4 128183134 128183322 -56105340 - L2 LINE L2 -1312 2002 1810 305 198 129 35 chr4 128183694 128183810 -56104852 - MER94 DNA DNA -3 131 5 2456 90 0 13 chr4 128184373 128184685 -56103977 - AluSx SINE Alu -4 308 1 2167 139 7 0 chr4 128184890 128185200 -56103462 - AluSx SINE Alu 0 312 1 1133 195 0 56 chr4 128185307 128185538 -56103124 - AluJo SINE Alu -8 304 87 719 154 83 6 chr4 128185538 128185694 -56102968 - L1MA4 LINE L1 -326 5974 5807 546 143 0 0 chr4 128185715 128185806 -56102856 + (TCCC)n Simple_repeat Simple_repeat 1 91 0 974 176 18 0 chr4 128185827 128185992 -56102670 - AluJb SINE Alu -5 307 140 599 191 77 29 chr4 128185995 128186241 -56102421 - L1MC5 LINE L1 -202 7759 7502 1964 122 0 27 chr4 128186331 128186625 -56102037 + AluSx SINE Alu 1 286 -26 226 88 73 0 chr4 128186625 128186693 -56101969 + (TA)n Simple_repeat Simple_repeat 1 73 0 436 238 47 12 chr4 128186707 128186905 -56101757 - L1MC5 LINE L1 -547 7495 7260 1032 227 97 45 chr4 128186950 128187151 -56101511 - L1MC4 LINE L1 -735 7226 7037 2217 104 0 13 chr4 128187151 128187458 -56101204 - AluSx SINE Alu -1 311 9 1032 227 97 45 chr4 128187458 128187795 -56100867 - L1MC4 LINE L1 -924 7037 6703 1858 121 60 0 chr4 128187802 128188083 -56100579 - AluSx SINE Alu -14 298 1 441 321 152 14 chr4 128188458 128188754 -56099908 + MLT1K LTR MaLR 139 475 -113 634 342 37 73 chr4 128188783 128189286 -56099376 + L2 LINE L2 2779 3266 -6 503 250 135 26 chr4 128190209 128190365 -56098297 + MIR SINE MIR 90 262 0 941 129 0 29 chr4 128190710 128190849 -56097813 - AluJo SINE Alu -177 135 1 440 284 90 13 chr4 128192607 128192762 -56095900 - MIR SINE MIR -6 256 90 1559 185 82 100 chr4 128193599 128193851 -56094811 + L1MC5 LINE L1 6708 6963 -998 1937 162 0 3 chr4 128193851 128194148 -56094514 + AluJo SINE Alu 1 296 -16 1559 185 82 100 chr4 128194148 128194564 -56094098 + L1MC5 LINE L1 6963 7364 -597 * 5947 81 9 50 chr4 128194547 128195043 -56093619 - L1P LINE L1 -1907 4239 3801 2224 92 3 7 chr4 128195043 128195389 -56093273 - AluY SINE Alu 0 311 1 5947 81 9 50 chr4 128195389 128195863 -56092799 - L1P LINE L1 -2345 3801 3309 8837 77 19 0 chr4 128195862 128197737 -56090925 + L1PA7 LINE L1 4252 6143 -11 557 149 0 11 chr4 128197739 128197826 -56090836 + AluS SINE Alu 2 87 -226 431 274 70 60 chr4 128197853 128198068 -56090594 + L2 LINE L2 3002 3218 -95 2069 176 2 128 chr4 128198291 128198685 -56089977 + MER47B DNA MER2_type 1 326 -1997 1949 143 36 0 chr4 128198685 128198986 -56089676 - AluSq SINE Alu -1 312 1 2069 176 2 128 chr4 128198986 128199069 -56089593 + MER47B DNA MER2_type 326 418 0 1645 157 0 121 chr4 128199204 128199536 -56089126 - AluJo SINE Alu -10 292 1 1013 146 61 18 chr4 128199540 128199740 -56088922 - AluSx SINE Alu 0 317 111 1035 118 0 0 chr4 128199794 128199929 -56088733 - AluSx SINE Alu -178 135 1 3793 131 30 11 chr4 128199952 128200550 -56088112 + L1MA4 LINE L1 5336 5948 -352 2285 93 3 16 chr4 128200550 128200863 -56087799 + AluSc SINE Alu 1 309 0 3793 131 30 11 chr4 128200863 128200891 -56087771 + L1MA4 LINE L1 5948 5974 -326 1113 183 0 62 chr4 128200891 128201131 -56087531 + AluJo SINE Alu 87 311 -1 1688 193 21 0 chr4 128201134 128201465 -56087197 + L1MA4 LINE L1 5959 6296 -4 1690 149 35 24 chr4 128201472 128201761 -56086901 + AluJo SINE Alu 2 293 -19 24 32 0 0 chr4 128202333 128202364 -56086298 + AT_rich Low_complexity Low_complexity 1 31 0 949 146 0 0 chr4 128203130 128203260 -56085402 + FLAM_C SINE Alu 1 130 -3 1571 204 3 7 chr4 128203264 128203563 -56085099 + AluJo SINE Alu 1 298 -14 2149 117 10 0 chr4 128203823 128204123 -56084539 + AluSp SINE Alu 10 312 -1 2329 38 42 3 chr4 128205085 128205373 -56083289 - AluY SINE Alu -12 299 1 24 53 0 0 chr4 128205510 128205548 -56083114 + AT_rich Low_complexity Low_complexity 1 38 0 274 241 0 0 chr4 128205607 128205661 -56083001 - L1MD2 LINE L1 -155 6204 6151 223 155 100 23 chr4 128205719 128205777 -56082885 + MIR SINE MIR 39 111 -97 611 266 71 22 chr4 128205914 128206098 -56082564 + MIR SINE MIR 8 200 -62 1846 113 0 83 chr4 128206405 128206732 -56081930 - AluY SINE Alu -7 304 5 25 0 0 0 chr4 128206881 128206906 -56081756 + AT_rich Low_complexity Low_complexity 1 25 0 997 160 0 37 chr4 128207179 128207367 -56081295 + AluJb SINE Alu 120 300 -12 2347 82 13 0 chr4 128207577 128207882 -56080780 - AluY SINE Alu -2 309 1 1718 242 136 38 chr4 128207955 128208612 -56080050 - MER21B LTR ERV1 -125 738 18 243 28 0 0 chr4 128208621 128208657 -56080005 - Alu SINE Alu 0 308 273 1097 98 0 14 chr4 128208657 128208800 -56079862 - AluSq/x SINE Alu -172 141 1 1740 177 0 7 chr4 128209106 128209405 -56079257 - AluJb SINE Alu -10 302 6 1621 243 33 91 chr4 128209593 128210112 -56078550 + MLT1E LTR MaLR 1 489 -104 1141 171 4 31 chr4 128210284 128210512 -56078150 - AluJo SINE Alu -3 309 88 337 200 0 17 chr4 128210512 128210572 -56078090 - AluSc SINE Alu -47 252 194 2114 143 0 0 chr4 128210827 128211127 -56077535 - AluSx SINE Alu -12 300 1 488 167 0 0 chr4 128212247 128212319 -56076343 - AluJ/FLAM SINE Alu -239 73 2 948 186 0 91 chr4 128212337 128212558 -56076104 + AluJo SINE Alu 85 285 -27 2483 80 0 0 chr4 128212642 128212943 -56075719 + AluSx SINE Alu 2 302 -10 253 364 60 5 chr4 128213010 128213194 -56075468 + L2 LINE L2 2565 2758 -556 29 0 0 0 chr4 128213916 128213945 -56074717 + AT_rich Low_complexity Low_complexity 1 29 0 2388 199 42 36 chr4 128214137 128214661 -56074001 - MER68 LTR ERV1 -6 556 30 2371 94 0 3 chr4 128214661 128214960 -56073702 + AluSx SINE Alu 1 298 -14 1919 149 35 0 chr4 128215293 128215582 -56073080 + AluSx SINE Alu 3 301 -11 2196 65 0 0 chr4 128215887 128216147 -56072515 + L1PA6 LINE L1 5891 6150 -4 1496 217 118 30 chr4 128216187 128216674 -56071988 - L1MC5 LINE L1 -470 7491 6953 2146 102 26 23 chr4 128216674 128216977 -56071685 - AluSg SINE Alu -5 305 2 1496 217 118 30 chr4 128216977 128217015 -56071647 - L1MC5 LINE L1 -1008 6953 6920 804 168 0 29 chr4 128217193 128217330 -56071332 + FLAM_C SINE Alu 1 133 0 2403 76 0 10 chr4 128217456 128217758 -56070904 + AluSx SINE Alu 1 299 -13 573 286 0 47 chr4 128217823 128217994 -56070668 + MER5B DNA MER1_type 1 163 -15 2279 107 0 3 chr4 128217994 128218292 -56070370 + AluSq SINE Alu 1 297 -16 2496 146 46 34 chr4 128218328 128218709 -56069953 - Cheshire DNA MER1_type 0 2420 2045 2232 113 0 3 chr4 128218709 128219011 -56069651 - AluSx SINE Alu -11 301 1 2644 56 0 0 chr4 128219017 128219322 -56069340 - AluY SINE Alu -6 305 1 2496 146 46 34 chr4 128219322 128219407 -56069255 - Cheshire DNA MER1_type -379 2041 1941 837 218 6 0 chr4 128219435 128219591 -56069071 - Cheshire DNA MER1_type -2112 308 152 1430 165 99 7 chr4 128219592 128219864 -56068798 + AluSx SINE Alu 2 298 -14 4188 142 40 39 chr4 128219905 128221285 -56067377 - pTR5 LTR ERV1 0 2438 737 2303 91 0 28 chr4 128221286 128221606 -56067056 - AluY SINE Alu 0 311 1 286 235 62 0 chr4 128221608 128221689 -56066973 - Cheshire DNA MER1_type -2300 120 35 1029 150 11 28 chr4 128221818 128221998 -56066664 + AluJo SINE Alu 120 296 -16 2336 70 3 13 chr4 128221998 128222298 -56066364 + AluY SINE Alu 1 297 -14 2268 167 27 45 chr4 128222427 128222829 -56065833 - MSTD LTR MaLR 0 396 2 2253 88 7 0 chr4 128223095 128223390 -56065272 - AluSp SINE Alu -16 297 1 1364 155 0 0 chr4 128223642 128223836 -56064826 - AluJb SINE Alu -118 194 1 1221 213 156 52 chr4 128223869 128224274 -56064388 - L1MC4a LINE L1 -1981 5827 5367 2103 114 10 17 chr4 128224274 128224405 -56064257 + AluSc SINE Alu 1 131 -178 2273 99 3 0 chr4 128224405 128224708 -56063954 + AluSq SINE Alu 1 304 -9 2103 114 10 17 chr4 128224708 128224873 -56063789 + AluSc SINE Alu 131 295 -14 1221 213 156 52 chr4 128224873 128224928 -56063734 - L1MC4a LINE L1 -2441 5367 5319 1885 145 78 30 chr4 128225096 128225177 -56063485 + MER7A DNA MER2_type 1 77 -2961 2200 115 13 3 chr4 128225177 128225481 -56063181 - AluSx SINE Alu -5 307 1 1885 145 78 30 chr4 128225481 128225731 -56062931 + MER7A DNA MER2_type 77 346 0 2255 112 0 16 chr4 128225788 128226102 -56062560 - AluSg SINE Alu -1 309 1 2675 131 25 11 chr4 128226357 128226792 -56061870 - L1MB3 LINE L1 -1 6182 5742 1705 148 7 28 chr4 128227468 128227751 -56060911 + AluJo SINE Alu 1 277 -35 249 98 0 0 chr4 128227751 128227792 -56060870 + (CA)n Simple_repeat Simple_repeat 1 41 0 1730 167 3 39 chr4 128227797 128227940 -56060722 + AluJo SINE Alu 1 129 -183 2196 114 3 3 chr4 128227940 128228237 -56060425 + AluSx SINE Alu 1 297 -15 1730 167 3 39 chr4 128228237 128228398 -56060264 + AluJo SINE Alu 129 294 -18 1109 181 6 0 chr4 128228407 128228573 -56060089 + FAM SINE Alu 1 167 -8 828 116 0 0 chr4 128228573 128228685 -56059977 + L1MA3 LINE L1 6183 6294 -11 2212 72 0 46 chr4 128229571 128229877 -56058785 + AluY SINE Alu 1 292 -19 210 259 86 12 chr4 128229931 128230012 -56058650 + MIR SINE MIR 162 248 -14 239 125 75 100 chr4 128230602 128230682 -56057980 - MIR SINE MIR -107 155 78 1846 111 19 4 chr4 128230804 128231065 -56057597 + AluSg SINE Alu 2 266 -44 536 103 29 0 chr4 128231065 128231133 -56057529 + AluSg/x SINE Alu 217 286 -24 2363 75 0 3 chr4 128231370 128231662 -56057000 + AluY SINE Alu 1 291 -20 2399 80 0 3 chr4 128231923 128232234 -56056428 - AluY SINE Alu -1 310 1 213 39 0 0 chr4 128232351 128232377 -56056285 + (T)n Simple_repeat Simple_repeat 1 26 0 794 220 6 11 chr4 128232506 128232683 -56055979 - Charlie1 DNA MER1_type -779 1982 1807 2072 120 13 3 chr4 128232685 128232984 -56055678 - AluSx SINE Alu -10 302 1 1376 229 90 9 chr4 128233212 128233635 -56055027 + L1ME3A LINE L1 5494 5950 -220 1298 170 14 65 chr4 128233678 128233787 -56054875 + AluJb SINE Alu 38 151 -161 2299 98 0 17 chr4 128233787 128234083 -56054579 + AluSc SINE Alu 1 291 -18 1298 170 14 65 chr4 128234083 128234249 -56054413 + AluJb SINE Alu 151 299 -13 2346 59 24 3 chr4 128234664 128234953 -56053709 - AluSp SINE Alu -17 296 2 852 202 32 119 chr4 128235023 128235117 -56053545 + MIR SINE MIR 2 103 -159 2288 88 0 52 chr4 128235117 128235446 -56053216 - AluSx SINE Alu 0 312 1 852 202 32 119 chr4 128235446 128235603 -56053059 + MIR SINE MIR 103 231 -31 330 314 80 0 chr4 128235629 128235766 -56052896 - L2 LINE L2 -1329 1985 1838 2371 78 3 0 chr4 128235870 128236165 -56052497 - AluSg1 SINE Alu -13 296 1 538 205 39 83 chr4 128236166 128236371 -56052291 - L1ME3A LINE L1 -186 5984 5789 2029 179 28 45 chr4 128236373 128236923 -56051739 - MLT2A2 LTR ERVL 0 554 1 685 238 122 28 chr4 128236929 128237143 -56051519 - L1ME3A LINE L1 -386 5784 5551 195 42 0 0 chr4 128237159 128237183 -56051479 + (T)n Simple_repeat Simple_repeat 1 24 0 2335 104 0 3 chr4 128237211 128237519 -56051143 - AluSg SINE Alu -3 307 1 2137 117 0 23 chr4 128237565 128237874 -56050788 - AluSg SINE Alu -8 302 1 1027 171 0 0 chr4 128237908 128238066 -56050596 - AluJb SINE Alu -3 309 152 4427 111 33 94 chr4 128238086 128238391 -56050271 - MER4E LTR ERV1 -9 770 448 2129 117 20 0 chr4 128238391 128238691 -56049971 + AluSq SINE Alu 1 306 -7 4427 111 33 94 chr4 128238691 128239004 -56049658 - MER4E LTR ERV1 -331 448 212 1823 154 0 7 chr4 128239004 128239352 -56049310 + AluSx SINE Alu 1 312 0 4427 111 33 94 chr4 128239352 128239552 -56049110 - MER4E LTR ERV1 -567 212 1 824 131 0 92 chr4 128239573 128239726 -56048936 - FLAM_C SINE Alu -4 139 1 818 165 0 0 chr4 128239857 128239972 -56048690 - FLAM_A SINE Alu -18 115 1 371 316 149 32 chr4 128239991 128240333 -56048329 + L2 LINE L2 2463 2844 -470 2406 80 0 3 chr4 128240354 128240666 -56047996 - AluY SINE Alu 0 311 1 358 284 129 9 chr4 128240703 128240778 -56047884 + L1ME4a LINE L1 5869 5934 -187 2446 81 3 0 chr4 128240778 128241087 -56047575 - AluSg SINE Alu 0 310 1 358 284 129 9 chr4 128241087 128241236 -56047426 + L1ME4a LINE L1 5934 6120 -1 1042 193 0 0 chr4 128241260 128241431 -56047231 + FAM SINE Alu 4 174 -1 2463 81 3 3 chr4 128241474 128241782 -56046880 - AluSp SINE Alu -5 308 1 1861 100 4 4 chr4 128242166 128242417 -56046245 + AluSx SINE Alu 47 297 -15 31 44 0 0 chr4 128242926 128242971 -56045691 + AT_rich Low_complexity Low_complexity 1 45 0 2175 94 7 3 chr4 128243284 128243570 -56045092 + AluSp SINE Alu 1 287 -26 2365 94 0 7 chr4 128243670 128243979 -56044683 + AluSg SINE Alu 1 307 -3 1181 106 0 0 chr4 128243982 128244143 -56044519 + AluSg/x SINE Alu 136 296 -16 1271 116 0 0 chr4 128244319 128244483 -56044179 - AluSq SINE Alu -149 164 1 24 0 0 0 chr4 128244487 128244511 -56044151 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr4 128244953 128244986 -56043676 + AT_rich Low_complexity Low_complexity 1 33 0 2252 78 0 62 chr4 128245454 128245762 -56042900 + AluSp SINE Alu 1 289 -24 212 253 13 0 chr4 128245872 128245947 -56042715 + (TA)n Simple_repeat Simple_repeat 2 77 0 324 277 21 0 chr4 128245947 128246041 -56042621 - L1MC4 LINE L1 -1339 6703 6608 244 244 8 122 chr4 128246209 128246332 -56042330 + MER102b DNA MER1_type 233 341 0 679 164 41 0 chr4 128247078 128247200 -56041462 + MLT1A2 LTR MaLR 245 371 -3 593 256 0 0 chr4 128247241 128247370 -56041292 + MER3 DNA MER1_type 1 129 -80 2130 97 4 4 chr4 128247370 128247648 -56041014 - AluSp SINE Alu -13 300 23 651 106 0 0 chr4 128247753 128247838 -56040824 - AluSg SINE Alu -224 86 2 2008 149 10 0 chr4 128248065 128248361 -56040301 - AluJo SINE Alu -13 299 1 1382 183 19 64 chr4 128248472 128248651 -56040011 - AluJo SINE Alu -9 303 142 1639 126 4 0 chr4 128248651 128248881 -56039781 - AluSp SINE Alu -6 307 77 1382 183 19 64 chr4 128248881 128249012 -56039650 - AluJo SINE Alu -170 142 7 752 127 0 0 chr4 128249016 128249126 -56039536 - L1MB3 LINE L1 -40 6143 6034 1417 181 82 29 chr4 128250084 128250365 -56038297 + AluJo SINE Alu 10 305 -7 2105 117 7 3 chr4 128250584 128250874 -56037788 - AluSx SINE Alu -21 291 1 2331 81 3 0 chr4 128250885 128251192 -56037470 - AluSx SINE Alu 0 308 1 2396 102 0 0 chr4 128251347 128251651 -56037011 - AluSx SINE Alu -8 304 1 24 32 0 0 chr4 128251737 128251768 -56036894 + AT_rich Low_complexity Low_complexity 1 31 0 1219 146 5 20 chr4 128251848 128252047 -56036615 - AluSg/x SINE Alu -4 305 110 21 36 0 0 chr4 128252100 128252128 -56036534 + AT_rich Low_complexity Low_complexity 1 28 0 412 172 132 29 chr4 128252248 128252422 -56036240 - L1MEc LINE L1 -4181 2215 2024 2347 88 0 3 chr4 128252438 128252734 -56035928 - AluSg SINE Alu -15 295 1 183 372 13 0 chr4 128253016 128253094 -56035568 - L2 LINE L2 -6 3266 3188 2282 81 17 10 chr4 128253374 128253672 -56034990 + AluSq SINE Alu 1 300 -13 220 364 27 0 chr4 128253750 128253860 -56034802 + L2 LINE L2 2185 2297 -1017 1993 122 6 10 chr4 128253886 128254197 -56034465 + AluSx SINE Alu 1 310 -2 365 320 90 10 chr4 128254298 128254498 -56034164 + L2 LINE L2 2479 2694 -620 1156 63 0 0 chr4 128254544 128254686 -56033976 - L1PA8 LINE L1 -14 6158 6017 2451 55 0 3 chr4 128254927 128255237 -56033425 - AluSc SINE Alu 0 309 1 2273 101 3 0 chr4 128255405 128255702 -56032960 - AluSg SINE Alu -12 298 1 259 61 0 0 chr4 128255726 128255759 -56032903 - Alu SINE Alu -274 34 2 890 209 0 0 chr4 128255761 128255924 -56032738 - FRAM SINE Alu -15 161 1 2191 114 13 0 chr4 128255932 128256230 -56032432 - AluSx SINE Alu -10 302 1 238 179 103 39 chr4 128256252 128256330 -56032332 - MER3 DNA MER1_type -2 207 125 552 81 14 0 chr4 128256330 128256404 -56032258 + AluS SINE Alu 2 76 -236 2215 79 34 7 chr4 128256615 128256907 -56031755 - AluSx SINE Alu -12 300 1 2120 122 16 0 chr4 128256986 128257290 -56031372 - AluSq SINE Alu -4 309 1 592 228 125 0 chr4 128257346 128257539 -56031123 - MIR SINE MIR 0 262 47 465 270 75 23 chr4 128257565 128257980 -56030682 - L1ME LINE L1 -313 5808 5341 2358 85 0 0 chr4 128259349 128259644 -56029018 + AluSx SINE Alu 1 295 -17 2255 93 7 3 chr4 128259645 128259927 -56028735 + AluSx SINE Alu 2 287 -25 258 32 0 0 chr4 128259927 128259958 -56028704 + (CCA)n Simple_repeat Simple_repeat 1 31 0 29 70 0 0 chr4 128261520 128261577 -56027085 + GC_rich Low_complexity Low_complexity 1 57 0 255 125 0 0 chr4 128261998 128262038 -56026624 + (CCG)n Simple_repeat Simple_repeat 1 40 0 1207 19 39 19 chr4 128262765 128262919 -56025743 + L1PA4 LINE L1 5997 6153 -2 2463 67 3 3 chr4 128263142 128263454 -56025208 + AluSx SINE Alu 1 312 0 2459 75 3 0 chr4 128263495 128263801 -56024861 + AluSp SINE Alu 1 307 -6 2526 78 0 0 chr4 128263987 128264293 -56024369 + AluSx SINE Alu 1 306 -6 805 229 0 6 chr4 128264753 128264946 -56023716 + FAM SINE Alu 1 56 0 734 105 9 0 chr4 128265267 128265381 -56023281 + (TTTC)n Simple_repeat Simple_repeat 2 116 0 657 174 50 0 chr4 128265384 128265505 -56023157 - FLAM_C SINE Alu 0 143 17 217 281 0 0 chr4 128265636 128265693 -56022969 + MIR SINE MIR 44 100 -108 41 58 0 0 chr4 128265788 128265857 -56022805 + AT_rich Low_complexity Low_complexity 1 69 0 1272 147 11 83 chr4 128265885 128266151 -56022511 - AluJo SINE Alu -64 248 2 2457 73 0 19 chr4 128266176 128266493 -56022169 - AluY SINE Alu 0 311 1 2111 124 3 0 chr4 128266493 128266792 -56021870 - AluSp SINE Alu -13 300 1 2110 87 0 37 chr4 128266813 128267113 -56021549 - AluSx SINE Alu -13 299 11 1938 141 16 23 chr4 128267726 128267892 -56020770 - AluSx SINE Alu -9 303 138 2550 59 0 0 chr4 128267892 128268195 -56020467 - AluY SINE Alu -8 303 1 1938 141 16 23 chr4 128268195 128268333 -56020329 - AluSx SINE Alu -174 138 1 1362 132 0 97 chr4 128268333 128268591 -56020071 - AluJo SINE Alu -17 295 63 650 148 8 33 chr4 128268593 128268715 -56019947 - AluJo/FLAM SINE Alu -180 132 14 21 0 0 0 chr4 128268743 128268764 -56019898 + AT_rich Low_complexity Low_complexity 1 21 0 2367 81 0 7 chr4 128270052 128270349 -56018313 + AluY SINE Alu 1 295 -16 2238 107 7 0 chr4 128270396 128270687 -56017975 + AluSq SINE Alu 3 295 -18 667 232 21 7 chr4 128270699 128270841 -56017821 + AluSg SINE Alu 3 146 -164 328 257 101 36 chr4 128270847 128271055 -56017607 - L1ME LINE L1 -330 5791 5577 2524 66 7 0 chr4 128271055 128271359 -56017303 - AluY SINE Alu -5 306 1 328 257 101 36 chr4 128271359 128271436 -56017226 - L1ME LINE L1 -544 5577 5506 2400 87 7 0 chr4 128271437 128271737 -56016925 - AluSx SINE Alu -10 302 1 2030 124 0 3 chr4 128272000 128272316 -56016346 - AluSx SINE Alu 0 315 1 22 0 0 0 chr4 128272414 128272436 -56016226 + AT_rich Low_complexity Low_complexity 1 22 0 2085 136 0 3 chr4 128272578 128272873 -56015789 - AluSx SINE Alu -18 294 1 23 0 0 0 chr4 128272875 128272898 -56015764 + AT_rich Low_complexity Low_complexity 1 23 0 248 288 72 0 chr4 128273000 128273111 -56015551 - L1ME LINE L1 -401 5720 5602 592 125 11 0 chr4 128273146 128273234 -56015428 - AluS SINE Alu -222 90 2 2300 91 3 0 chr4 128273287 128273584 -56015078 - AluSp SINE Alu -14 299 2 1744 154 59 0 chr4 128274450 128274722 -56013940 - AluJo SINE Alu -14 298 11 1785 190 6 3 chr4 128274881 128275192 -56013470 - AluJb SINE Alu 0 312 1 2250 88 32 0 chr4 128275367 128275650 -56013012 - AluSx SINE Alu -20 292 1 1387 194 159 79 chr4 128275688 128276088 -56012574 - L1ME1 LINE L1 -220 5946 5483 1884 150 4 7 chr4 128276088 128276368 -56012294 - AluJb SINE Alu -29 283 5 1387 194 159 79 chr4 128276368 128276550 -56012112 - L1ME1 LINE L1 -683 5483 5317 1836 145 3 11 chr4 128276562 128276844 -56011818 + AluSx SINE Alu 1 280 -32 238 239 60 34 chr4 128276880 128276997 -56011665 - L1 LINE L1 -841 5305 5186 1953 100 75 14 chr4 128277679 128277958 -56010704 + AluSx SINE Alu 1 296 -16 239 331 108 31 chr4 128278190 128278320 -56010342 - L2 LINE L2 -432 2882 2743 2163 114 3 10 chr4 128278432 128278740 -56009922 - AluSx SINE Alu -6 306 1 31 26 0 0 chr4 128278885 128278923 -56009739 + AT_rich Low_complexity Low_complexity 1 38 0 1994 136 0 3 chr4 128278923 128279210 -56009452 - AluJo SINE Alu -26 286 1 2173 70 33 27 chr4 128279326 128279627 -56009035 - AluSp SINE Alu -9 304 2 2349 100 0 3 chr4 128280423 128280724 -56007938 - AluSx SINE Alu -12 300 1 180 0 0 0 chr4 128280724 128280744 -56007918 + (T)n Simple_repeat Simple_repeat 1 20 0 1988 109 0 4 chr4 128281114 128281381 -56007281 - AluSx SINE Alu -46 266 1 1360 199 127 30 chr4 128281728 128282131 -56006531 - L1MC4 LINE L1 -150 7892 7451 6424 52 14 35 chr4 128282159 128283013 -56005649 - SVA Other Other 0 1386 551 248 50 0 0 chr4 128283120 128283160 -56005502 + Alu SINE Alu 261 300 0 2127 114 0 0 chr4 128283161 128283442 -56005220 - AluSx SINE Alu -31 281 1 693 294 129 3 chr4 128283454 128283579 -56005083 + HAL1b LINE L1 366 474 -874 192 40 0 0 chr4 128283579 128283604 -56005058 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 693 294 129 3 chr4 128283604 128283893 -56004769 + HAL1b LINE L1 474 612 -736 7203 204 13 16 chr4 128283916 128285234 -56003428 + L1P LINE L1 3767 5082 -1064 2156 101 98 18 chr4 128285234 128285571 -56003091 + THE1B LTR MaLR 1 364 0 7203 204 13 16 chr4 128285571 128285848 -56002814 + L1P LINE L1 5082 5358 -788 339 157 0 0 chr4 128285849 128285900 -56002762 - L1PA16 LINE L1 -93 6073 6023 1581 122 0 0 chr4 128286126 128286347 -56002315 - AluSg/x SINE Alu -5 305 85 37 0 0 0 chr4 128286351 128286388 -56002274 + AT_rich Low_complexity Low_complexity 1 37 0 762 171 23 0 chr4 128286764 128286893 -56001769 + FLAM_A SINE Alu 1 132 -1 1845 73 165 0 chr4 128286896 128287157 -56001505 + AluY SINE Alu 1 304 -7 1939 155 13 3 chr4 128287246 128287555 -56001107 + AluJo SINE Alu 1 312 0 248 177 32 0 chr4 128287558 128287620 -56001042 + GA-rich Low_complexity Low_complexity 6 69 0 4602 168 74 37 chr4 128288157 128289190 -55999472 + MER11C LTR ERVK 1 1071 0 25 90 0 0 chr4 128289853 128289920 -55998742 + AT_rich Low_complexity Low_complexity 1 67 0 221 219 0 0 chr4 128290136 128290177 -55998485 + (CA)n Simple_repeat Simple_repeat 2 42 0 2188 115 0 0 chr4 128290255 128290542 -55998120 + AluSx SINE Alu 1 287 -25 2137 110 30 7 chr4 128290840 128291141 -55997521 - AluSx SINE Alu -4 308 1 493 314 55 4 chr4 128291510 128291746 -55996916 + L1ME4a LINE L1 5575 5822 -299 230 198 188 10 chr4 128291805 128291901 -55996761 + L1ME4a LINE L1 5960 6072 -49 842 177 140 27 chr4 128292370 128292556 -55996106 - AluJo SINE Alu -20 292 86 1562 200 7 17 chr4 128292610 128292910 -55995752 + AluJb SINE Alu 1 297 -15 2182 102 3 10 chr4 128292968 128293262 -55995400 - AluSq SINE Alu -21 292 1 240 341 129 6 chr4 128293268 128293438 -55995224 - MIR SINE MIR -70 192 2 24 0 0 0 chr4 128293467 128293491 -55995171 + AT_rich Low_complexity Low_complexity 1 24 0 1789 115 48 15 chr4 128293929 128294198 -55994464 + AluSx SINE Alu 1 278 -34 254 143 0 0 chr4 128294208 128294274 -55994388 + Alu SINE Alu 247 312 0 1734 157 34 14 chr4 128294289 128294582 -55994080 + AluSx SINE Alu 1 299 -13 376 220 270 58 chr4 128294818 128294880 -55993782 - L1ME4a LINE L1 0 6121 6073 2044 131 7 3 chr4 128294880 128295171 -55993491 - AluSx SINE Alu -20 292 1 376 220 270 58 chr4 128295171 128295479 -55993183 - L1ME4a LINE L1 -48 6073 5674 5398 161 19 8 chr4 128295876 128296829 -55991833 - L1MA3 LINE L1 0 6305 5343 1871 175 0 3 chr4 128296920 128297212 -55991450 + AluJb SINE Alu 1 291 -21 2063 129 19 10 chr4 128297715 128298024 -55990638 - AluSx SINE Alu 0 312 1 2129 118 3 0 chr4 128298094 128298381 -55990281 - AluSx SINE Alu -24 288 1 4192 155 36 60 chr4 128298537 128299420 -55989242 + L1MB7 LINE L1 5282 6143 -41 1966 87 0 47 chr4 128299425 128299701 -55988961 - AluSc SINE Alu -17 292 30 33 73 0 0 chr4 128299852 128299920 -55988742 + AT_rich Low_complexity Low_complexity 1 68 0 2255 70 7 14 chr4 128300567 128300876 -55987786 - AluSp SINE Alu 0 307 1 2051 117 13 35 chr4 128301386 128301570 -55987092 - AluSg SINE Alu -1 309 133 2258 87 27 3 chr4 128301570 128301868 -55986794 - AluSg SINE Alu -5 305 1 2051 117 13 35 chr4 128301868 128301999 -55986663 - AluSg SINE Alu -177 133 1 598 234 99 50 chr4 128302821 128303043 -55985619 - MIR SINE MIR -27 235 3 415 295 50 25 chr4 128303895 128304095 -55984567 - L2 LINE L2 -5 3308 3104 527 160 11 11 chr4 128304159 128304253 -55984409 - Tigger5 DNA MER2_type 0 2323 2230 278 208 0 19 chr4 128304257 128304310 -55984352 - Tigger5 DNA MER2_type -2268 55 4 22 56 0 0 chr4 128304489 128304525 -55984137 + AT_rich Low_complexity Low_complexity 1 36 0 2130 124 0 7 chr4 128304604 128304910 -55983752 - AluSx SINE Alu -8 304 1 2064 200 56 0 chr4 128305021 128305396 -55983266 - MSTD LTR MaLR 0 396 1 2309 116 0 0 chr4 128305516 128305818 -55982844 - AluSx SINE Alu -10 302 1 2284 101 0 0 chr4 128305880 128306178 -55982484 - AluY SINE Alu -13 298 1 239 246 18 18 chr4 128306456 128306513 -55982149 + Tigger5 DNA MER2_type 2266 2322 -1 311 139 0 0 chr4 128306514 128306557 -55982105 + Tigger5 DNA MER2_type 13 55 -2268 506 174 0 22 chr4 128306564 128306656 -55982006 + Tigger5 DNA MER2_type 2234 2323 0 540 244 194 0 chr4 128306670 128306850 -55981812 + MIR SINE MIR 5 219 -43 247 65 0 65 chr4 128307195 128307241 -55981421 + L1MA2 LINE L1 6263 6305 0 2374 98 3 0 chr4 128307955 128308260 -55980402 - AluSp SINE Alu -7 306 1 2390 81 0 0 chr4 128308396 128308691 -55979971 - AluY SINE Alu -16 295 1 1135 192 101 68 chr4 128308872 128309237 -55979425 - MER58D DNA MER1_type -9 377 1 1936 146 29 0 chr4 128309333 128309644 -55979018 + AluSx SINE Alu 1 319 0 2308 154 32 47 chr4 128309845 128310318 -55978344 + L1MB3 LINE L1 5718 6183 0 2361 79 0 29 chr4 128310431 128310746 -55977916 - AluSq SINE Alu -7 306 1 567 153 12 0 chr4 128310781 128310866 -55977796 + AluJ/FLAM SINE Alu 2 87 -225 1283 99 0 112 chr4 128310970 128311212 -55977450 - AluY SINE Alu -94 217 3 250 317 128 14 chr4 128311371 128311519 -55977143 + MIR SINE MIR 40 202 -60 315 313 106 90 chr4 128311933 128312300 -55976362 + L1M2 LINE L1 746 1118 -5731 4548 117 104 114 chr4 128312989 128314408 -55974254 + pTR5 LTR ERV1 743 2438 0 346 94 0 0 chr4 128315107 128315160 -55973502 - Alu SINE Alu -11 291 239 1822 119 4 4 chr4 128315317 128315577 -55973085 - AluSx SINE Alu -22 290 31 2659 26 0 22 chr4 128315948 128316260 -55972402 - AluY SINE Alu -6 305 1 1269 174 100 17 chr4 128316756 128317055 -55971607 - MER58D DNA MER1_type 0 386 63 2132 101 18 3 chr4 128317261 128317547 -55971115 - AluSq SINE Alu -23 290 1 259 311 67 22 chr4 128317559 128317694 -55970968 - L3 LINE CR1 -809 768 628 1706 282 51 43 chr4 128318025 128318951 -55969711 - L1MD3 LINE L1 0 8042 7122 1591 169 106 0 chr4 128320384 128320734 -55967928 - L1MB2 LINE L1 0 6171 5785 400 208 57 19 chr4 128320736 128320842 -55967820 - MER34 LTR ERV1 -2 540 431 2361 87 3 0 chr4 128320957 128321256 -55967406 - AluSp SINE Alu -11 302 3 2324 70 20 3 chr4 128321272 128321571 -55967091 - AluY SINE Alu -7 304 1 519 128 26 0 chr4 128321825 128321903 -55966759 + AluSg/x SINE Alu 214 293 -16 2046 80 4 4 chr4 128321960 128322234 -55966428 + AluSx SINE Alu 1 274 -38 1454 130 126 21 chr4 128322238 128322367 -55966295 + AluSx SINE Alu 9 123 -189 2224 108 0 3 chr4 128322367 128322663 -55965999 + AluSx SINE Alu 1 295 -17 1454 130 126 21 chr4 128322663 128322772 -55965890 + AluSx SINE Alu 123 272 -40 2026 103 43 13 chr4 128322798 128323100 -55965562 + AluSx SINE Alu 1 311 -1 2152 99 3 3 chr4 128323121 128323415 -55965247 + AluSx SINE Alu 1 294 -18 524 120 0 40 chr4 128323416 128323516 -55965146 + AluS SINE Alu 2 97 -215 198 0 0 0 chr4 128323616 128323638 -55965024 + (A)n Simple_repeat Simple_repeat 1 22 0 319 218 287 0 chr4 128323802 128323903 -55964759 + L2 LINE L2 2229 2358 -956 2437 54 10 3 chr4 128323903 128324197 -55964465 - AluY SINE Alu -15 296 1 746 267 102 51 chr4 128324209 128324529 -55964133 + L2 LINE L2 2476 2819 -495 2096 139 3 0 chr4 128324529 128324832 -55963830 - AluSx SINE Alu -8 304 1 746 267 102 51 chr4 128324832 128324885 -55963777 + L2 LINE L2 2819 2868 -446 264 256 153 15 chr4 128325023 128325160 -55963502 + L2 LINE L2 3104 3259 -54 2205 112 10 0 chr4 128325339 128325635 -55963027 + AluSx SINE Alu 1 299 -13 2224 92 21 0 chr4 128325960 128326241 -55962421 + AluSc SINE Alu 1 287 -22 356 235 71 0 chr4 128326354 128326439 -55962223 - L2 LINE L2 0 3272 3182 266 303 68 80 chr4 128326496 128326752 -55961910 - L2 LINE L2 -1352 1962 1711 198 0 0 0 chr4 128326752 128326774 -55961888 + (TG)n Simple_repeat Simple_repeat 2 23 0 266 303 68 80 chr4 128326774 128326929 -55961733 - L2 LINE L2 -1603 1711 1556 963 211 78 15 chr4 128326936 128327140 -55961522 - MER20 DNA MER1_type 0 219 3 946 271 108 39 chr4 128327140 128327469 -55961193 - L1MEc LINE L1 -4736 1908 1603 554 227 109 0 chr4 128327469 128327588 -55961074 - FLAM_A SINE Alu 0 133 2 946 271 108 39 chr4 128327588 128328055 -55960607 - L1MEc LINE L1 -5041 1603 962 641 330 26 7 chr4 128328581 128328854 -55959808 - L1MEc LINE L1 -6081 744 467 278 267 27 0 chr4 128328856 128328931 -55959731 + L1ME LINE L1 5448 5524 -642 1208 162 0 5 chr4 128329031 128329235 -55959427 + AluSg/x SINE Alu 100 302 -8 22 56 0 0 chr4 128329314 128329350 -55959312 + AT_rich Low_complexity Low_complexity 1 36 0 5808 72 26 11 chr4 128329432 128330404 -55958258 - SVA Other Other -520 866 7 317 239 56 0 chr4 128330423 128330494 -55958168 - L1MC4 LINE L1 -602 7440 7366 2066 128 3 7 chr4 128330609 128330906 -55957756 - AluSx SINE Alu -16 296 1 319 195 24 152 chr4 128330914 128331078 -55957584 - L1MC4a LINE L1 -507 7301 7159 1828 140 22 48 chr4 128331097 128331411 -55957251 - AluJo SINE Alu -6 306 1 963 209 138 0 chr4 128331413 128331666 -55956996 - L1ME LINE L1 -347 5819 5532 2145 87 34 7 chr4 128331750 128332048 -55956614 - AluY SINE Alu -5 306 1 1820 152 7 10 chr4 128332084 128332374 -55956288 - AluJb SINE Alu -23 289 1 573 100 0 0 chr4 128332553 128332623 -55956039 - Alu SINE Alu -21 290 221 315 109 0 22 chr4 128332623 128332669 -55955993 - Alu SINE Alu -256 45 1 305 141 8 0 chr4 128332713 128332767 -55955895 - AluSx SINE Alu -6 295 250 1384 122 0 5 chr4 128332768 128332964 -55955698 - AluSx SINE Alu -117 195 1 226 250 26 0 chr4 128333198 128333274 -55955388 - L1MC4 LINE L1 -4 8038 7961 650 194 0 0 chr4 128333483 128333586 -55955076 + FAM SINE Alu 8 110 -75 22 70 0 0 chr4 128333708 128333751 -55954911 + AT_rich Low_complexity Low_complexity 1 43 0 945 136 32 19 chr4 128333784 128333938 -55954724 + FRAM SINE Alu 1 151 -25 183 80 0 0 chr4 128333941 128333966 -55954696 + (ATG)n Simple_repeat Simple_repeat 3 27 0 250 269 51 13 chr4 128334250 128334328 -55954334 - L1ME LINE L1 -410 5760 5680 312 267 13 0 chr4 128334363 128334438 -55954224 - MER112 DNA MER1_type -11 249 174 733 115 0 167 chr4 128334562 128334718 -55953944 + FLAM_C SINE Alu 1 130 -3 827 186 98 49 chr4 128334780 128334984 -55953678 + MER20 DNA MER1_type 6 219 0 270 275 53 70 chr4 128335023 128335091 -55953571 - L1ME LINE L1 -579 5583 5515 2212 111 0 0 chr4 128335091 128335379 -55953283 - AluSx SINE Alu -24 288 1 270 275 53 70 chr4 128335379 128335481 -55953181 - L1ME LINE L1 -647 5515 5416 1960 152 3 7 chr4 128335506 128335816 -55952846 - AluSx SINE Alu -3 309 1 2047 131 0 0 chr4 128335818 128336116 -55952546 - AluSx SINE Alu -14 298 1 350 305 74 25 chr4 128336136 128336339 -55952323 - L1ME LINE L1 -746 5400 5188 27 0 0 0 chr4 128336716 128336743 -55951919 + AT_rich Low_complexity Low_complexity 1 27 0 2086 141 0 0 chr4 128337343 128337640 -55951022 - AluSx SINE Alu -15 297 1 22 35 0 0 chr4 128337686 128337715 -55950947 + AT_rich Low_complexity Low_complexity 1 29 0 2452 70 0 0 chr4 128339059 128339360 -55949302 + AluY SINE Alu 1 301 -10 2282 109 0 13 chr4 128339442 128339755 -55948907 - AluSq SINE Alu -4 309 1 22 56 0 0 chr4 128339755 128339791 -55948871 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr4 128339800 128339828 -55948834 + AT_rich Low_complexity Low_complexity 1 28 0 1110 81 0 0 chr4 128339833 128339969 -55948693 - AluSg SINE Alu -174 136 1 203 194 0 0 chr4 128340118 128340154 -55948508 + T-rich Low_complexity Low_complexity 1 36 0 2608 36 0 3 chr4 128340684 128340985 -55947677 - AluY SINE Alu -11 300 1 2547 69 0 0 chr4 128341289 128341592 -55947070 - AluY SINE Alu -8 303 1 1843 144 17 0 chr4 128341598 128341890 -55946772 - AluSx SINE Alu -15 297 1 2028 121 4 0 chr4 128341988 128342299 -55946363 - AluSp SINE Alu 0 312 1 315 194 0 0 chr4 128343040 128343102 -55945560 + L1MC2 LINE L1 6265 6326 -18 234 91 0 0 chr4 128343428 128343461 -55945201 + (TA)n Simple_repeat Simple_repeat 2 34 0 2134 143 0 0 chr4 128343461 128343768 -55944894 - AluSg SINE Alu -3 307 1 326 93 0 0 chr4 128343808 128343851 -55944811 + Alu SINE Alu 1 43 -258 1571 128 4 0 chr4 128343968 128344194 -55944468 - AluSg/x SINE Alu 0 310 84 2060 204 98 20 chr4 128344194 128344408 -55944254 - L1ME1 LINE L1 -267 5899 5703 189 0 0 0 chr4 128344408 128344429 -55944233 + (CA)n Simple_repeat Simple_repeat 2 22 0 2060 204 98 20 chr4 128344429 128344644 -55944018 - L1ME1 LINE L1 -463 5703 5506 2102 99 0 51 chr4 128344644 128344957 -55943705 - AluSq SINE Alu -16 297 1 2141 108 0 7 chr4 128344965 128345262 -55943400 - AluSc SINE Alu -12 297 3 2060 204 98 20 chr4 128345262 128345490 -55943172 - L1ME1 LINE L1 -666 5500 5188 2358 96 3 3 chr4 128345498 128345810 -55942852 - AluSx SINE Alu 0 312 1 222 37 0 0 chr4 128345939 128345966 -55942696 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 920 121 0 0 chr4 128345970 128346094 -55942568 - AluSq/x SINE Alu -188 125 2 227 189 189 57 chr4 128346624 128346730 -55941932 + MIR SINE MIR 143 262 0 342 277 78 42 chr4 128347028 128347194 -55941468 + MIR SINE MIR 58 229 -33 2363 93 3 0 chr4 128347877 128348177 -55940485 - AluSx SINE Alu -11 301 1 22 0 0 0 chr4 128348182 128348204 -55940458 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr4 128348321 128348341 -55940321 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 529 104 0 0 chr4 128348351 128348418 -55940244 - Alu SINE Alu -242 67 2 653 259 137 33 chr4 128348453 128348749 -55939913 - L1ME3 LINE L1 -60 6102 5838 2137 116 3 6 chr4 128348749 128349060 -55939602 - AluSx SINE Alu -1 311 2 653 259 137 33 chr4 128349060 128349333 -55939329 - L1ME3 LINE L1 -324 5838 5476 724 236 122 20 chr4 128349396 128349692 -55938970 - L1ME2 LINE L1 0 6164 5839 428 309 114 0 chr4 128349695 128349870 -55938792 - L1MC4a LINE L1 -1114 6694 6500 2128 120 7 7 chr4 128349926 128350235 -55938427 + AluSg SINE Alu 1 309 -1 2146 113 3 0 chr4 128350343 128350634 -55938028 - AluSc SINE Alu -15 294 3 399 241 131 7 chr4 128350921 128351066 -55937596 + MIR SINE MIR 51 213 -49 200 139 28 0 chr4 128351681 128351717 -55936945 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 21 36 0 0 chr4 128353959 128353987 -55934675 + AT_rich Low_complexity Low_complexity 1 28 0 2208 109 10 0 chr4 128354220 128354514 -55934148 - AluSg SINE Alu -13 297 1 441 18 0 0 chr4 128354812 128354867 -55933795 + AluY SINE Alu 243 297 -13 481 246 18 9 chr4 128355105 128355215 -55933447 + FLAM_A SINE Alu 2 112 -30 2136 102 3 13 chr4 128355217 128355521 -55933141 - AluSx SINE Alu -11 301 1 1174 210 20 32 chr4 128355592 128355844 -55932818 + AluJo SINE Alu 1 249 -63 2086 88 41 30 chr4 128355865 128356160 -55932502 - AluSq SINE Alu -11 302 5 538 169 128 116 chr4 128356347 128356641 -55932021 - MER33 DNA MER1_type -2261 324 24 2340 104 0 0 chr4 128356641 128356948 -55931714 - AluSx SINE Alu -5 307 1 538 169 128 116 chr4 128356948 128356973 -55931689 - MER33 DNA MER1_type -2561 24 1 2057 123 23 7 chr4 128357513 128357815 -55930847 - AluSg1 SINE Alu -2 307 1 1787 77 5 0 chr4 128357956 128358178 -55930484 - AluSp SINE Alu -8 305 83 2334 91 0 0 chr4 128359113 128359410 -55929252 - AluSg SINE Alu -13 297 1 1650 166 3 30 chr4 128359455 128359756 -55928906 + AluJo SINE Alu 1 293 -19 1571 178 0 17 chr4 128359836 128360134 -55928528 - AluSx SINE Alu -19 293 1 1084 216 92 21 chr4 128360269 128360607 -55928055 + L1MD2 LINE L1 5996 6357 -2 379 270 65 19 chr4 128360952 128361078 -55927584 - HAL1 LINE L1 -910 1597 1478 1833 144 50 13 chr4 128361078 128361376 -55927286 - AluSg SINE Alu -1 309 1 2067 105 0 77 chr4 128361381 128361567 -55927095 - AluSq SINE Alu -15 298 146 2096 117 7 0 chr4 128361567 128361858 -55926804 - AluSx SINE Alu -19 293 1 2067 105 0 77 chr4 128361858 128361994 -55926668 - AluSq SINE Alu -167 146 1 379 270 65 19 chr4 128361994 128362076 -55926586 - HAL1 LINE L1 -1032 1475 1373 1796 151 0 35 chr4 128362088 128362400 -55926262 - AluJb SINE Alu -11 301 1 2369 66 3 16 chr4 128362407 128362710 -55925952 - AluY SINE Alu -12 299 1 2457 59 0 23 chr4 128363056 128363359 -55925303 - AluSq SINE Alu -17 296 1 485 213 71 24 chr4 128364273 128364400 -55924262 + L2 LINE L2 3181 3313 0 2086 116 0 66 chr4 128364624 128364944 -55923718 - AluSx SINE Alu -13 299 1 2471 79 0 0 chr4 128364978 128365283 -55923379 - AluSg SINE Alu -5 305 1 291 54 0 0 chr4 128365467 128365504 -55923158 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 1007 110 0 14 chr4 128365504 128365650 -55923012 - AluSq SINE Alu -25 288 145 248 299 56 37 chr4 128365668 128365775 -55922887 + MIR3 SINE MIR 79 187 -21 237 98 0 0 chr4 128366613 128366654 -55922008 + (T)n Simple_repeat Simple_repeat 1 41 0 488 267 83 46 chr4 128367619 128367859 -55920803 + L2 LINE L2 3065 3313 0 786 316 92 39 chr4 128368259 128368943 -55919719 - L2 LINE L2 -2 3270 2553 310 333 55 12 chr4 128368989 128369154 -55919508 - L2 LINE L2 -1274 2040 1869 510 148 0 0 chr4 128369466 128369554 -55919108 + L1PB1 LINE L1 6062 6149 -2 2256 102 3 3 chr4 128369645 128369949 -55918713 + AluSc SINE Alu 6 309 0 2238 120 0 3 chr4 128370288 128370597 -55918065 - AluSx SINE Alu -4 308 1 344 254 55 91 chr4 128371170 128371335 -55917327 + L1MEd LINE L1 1158 1316 -4889 271 320 0 0 chr4 128371400 128371497 -55917165 + L1MEd LINE L1 1531 1627 -4769 1828 223 42 19 chr4 128371817 128371899 -55916763 + L1M4 LINE L1 4626 4705 -1441 2156 103 13 3 chr4 128371899 128372199 -55916463 + AluSq SINE Alu 1 303 -10 1828 223 42 19 chr4 128372199 128372682 -55915980 + L1M4 LINE L1 4705 5204 -942 1464 219 45 59 chr4 128372685 128373109 -55915553 - MER47B DNA MER2_type 0 418 1 274 232 36 9 chr4 128373114 128373226 -55915436 + L1M4 LINE L1 4369 4483 -1663 2597 58 0 3 chr4 128373230 128373542 -55915120 + AluY SINE Alu 1 311 0 1041 110 37 6 chr4 128373547 128373711 -55914951 + AluSg/x SINE Alu 129 297 -15 248 211 44 56 chr4 128373720 128373810 -55914852 + L1M4 LINE L1 4496 4584 -1562 603 264 77 5 chr4 128373917 128374137 -55914525 + L1M4 LINE L1 4670 4905 -1241 1208 233 3 10 chr4 128374263 128374572 -55914090 + AluY SINE Alu 5 311 0 1076 103 36 6 chr4 128374577 128374742 -55913920 + AluSg/x SINE Alu 127 296 -14 1483 244 75 58 chr4 128374750 128375440 -55913222 + L1MC1 LINE L1 4496 5197 -949 824 133 16 31 chr4 128375444 128375572 -55913090 + FLAM_C SINE Alu 1 126 -17 4012 169 74 45 chr4 128375586 128376685 -55911977 + L1MC1 LINE L1 5200 6315 -18 272 117 100 0 chr4 128376820 128376880 -55911782 + L1MB8 LINE L1 5265 5330 -1014 1323 176 0 18 chr4 128376880 128377102 -55911560 + AluJo SINE Alu 72 289 -23 2100 190 55 18 chr4 128377115 128377610 -55911052 + L1MB8 LINE L1 5319 5831 -353 2219 101 0 3 chr4 128377636 128377923 -55910739 - AluSx SINE Alu -26 286 1 22 0 0 0 chr4 128377923 128377945 -55910717 + AT_rich Low_complexity Low_complexity 1 22 0 237 202 138 0 chr4 128377973 128378067 -55910595 + L1MB8 LINE L1 5805 5911 -267 3123 133 41 2 chr4 128378070 128378553 -55910109 - MER1A DNA MER1_type 0 529 28 829 163 73 6 chr4 128378557 128378735 -55909927 + L1MB8 LINE L1 5984 6173 -5 3904 208 39 34 chr4 128378741 128379075 -55909587 + L1MB2 LINE L1 4495 4826 -1345 2290 107 0 0 chr4 128379075 128379374 -55909288 - AluSq SINE Alu -14 299 1 1493 206 27 27 chr4 128379377 128379678 -55908984 - AluJo SINE Alu -11 301 1 3904 208 39 34 chr4 128379678 128380200 -55908462 + L1MB2 LINE L1 4827 5345 -826 1902 130 29 4 chr4 128380200 128380523 -55908139 + AluSx SINE Alu 1 330 0 3904 208 39 34 chr4 128380523 128381320 -55907342 + L1MB2 LINE L1 5345 6169 -2 215 205 48 0 chr4 128381339 128381388 -55907274 + A-rich Low_complexity Low_complexity 5 61 -30 2179 126 0 22 chr4 128381388 128381706 -55906956 + AluSx SINE Alu 1 311 -1 215 205 48 0 chr4 128381706 128381739 -55906923 + A-rich Low_complexity Low_complexity 61 91 0 240 276 76 0 chr4 128381767 128381912 -55906750 + L1M4 LINE L1 2348 2503 -3643 746 184 7 7 chr4 128382141 128382277 -55906385 - AluJo SINE Alu -174 138 3 349 260 136 40 chr4 128382288 128382465 -55906197 + L1M4 LINE L1 2811 3004 -3142 589 114 0 0 chr4 128382540 128382628 -55906034 + AluSg/x SINE Alu 217 304 -8 886 93 7 0 chr4 128382947 128383087 -55905575 - L1MA5 LINE L1 -1 6299 6159 311 181 14 0 chr4 128383097 128383169 -55905493 + (TA)n Simple_repeat Simple_repeat 2 74 0 888 155 36 48 chr4 128383169 128383337 -55905325 - AluSg/x SINE Alu -17 293 128 351 307 158 4 chr4 128383442 128383670 -55904992 + L1M4 LINE L1 3068 3330 -2816 1886 136 29 0 chr4 128384053 128384333 -55904329 + AluSx SINE Alu 1 288 -24 694 124 41 0 chr4 128384531 128384652 -55904010 + L1MA4 LINE L1 6160 6285 -15 840 189 5 95 chr4 128384724 128384914 -55903748 + FAM SINE Alu 1 173 -2 333 71 5 0 chr4 128384987 128385036 -55903626 + Alu SINE Alu 231 273 -27 330 246 109 0 chr4 128385072 128385283 -55903379 + L1MB4 LINE L1 5330 5562 -604 726 148 81 7 chr4 128385310 128385499 -55903163 + MER33 DNA MER1_type 1 190 -72 2364 69 7 3 chr4 128386202 128386491 -55902171 - AluSg1 SINE Alu -19 290 1 2638 42 0 3 chr4 128437389 128437699 -55850963 + AluY SINE Alu 1 309 -2 1052 168 0 0 chr4 128437706 128437867 -55850795 + AluSg/x SINE Alu 134 294 -18 435 196 117 11 chr4 128437869 128438048 -55850614 - L1MCc LINE L1 -4891 1532 1335 213 239 14 56 chr4 128438469 128438540 -55850122 - MIR SINE MIR 0 262 195 739 183 233 40 chr4 128438659 128438960 -55849702 + L1M4 LINE L1 2997 3355 -2791 2269 114 10 0 chr4 128438960 128439267 -55849395 + AluSg SINE Alu 1 310 0 1467 153 0 5 chr4 128439308 128439531 -55849131 + AluJb SINE Alu 85 306 -6 647 113 0 0 chr4 128439575 128439672 -55848990 - AluSg/x SINE Alu -4 306 210 2059 172 61 46 chr4 128439672 128440212 -55848450 + L1MB4 LINE L1 5625 6172 -8 2196 187 81 93 chr4 128440246 128440402 -55848260 - Charlie1a DNA MER1_type -2042 719 563 2449 87 0 0 chr4 128440402 128440711 -55847951 + AluSc SINE Alu 1 309 0 2196 187 81 93 chr4 128440711 128440869 -55847793 - Charlie1a DNA MER1_type -2198 563 405 2381 95 3 3 chr4 128440869 128441174 -55847488 - AluSx SINE Alu -7 305 1 2196 187 81 93 chr4 128441174 128441230 -55847432 - Charlie1a DNA MER1_type -2356 405 350 754 127 16 0 chr4 128441230 128441356 -55847306 - L1MB2 LINE L1 -7 6164 6037 2196 187 81 93 chr4 128441356 128441711 -55846951 - Charlie1a DNA MER1_type -2411 350 1 35 24 0 0 chr4 128442613 128442655 -55846007 + AT_rich Low_complexity Low_complexity 1 42 0 2177 134 0 0 chr4 128442792 128443091 -55845571 + AluSx SINE Alu 1 299 -13 1085 103 85 0 chr4 128443177 128443342 -55845320 - MER1B DNA MER1_type 0 339 161 25 0 0 0 chr4 128443474 128443499 -55845163 + AT_rich Low_complexity Low_complexity 1 25 0 1817 228 107 10 chr4 128443825 128444313 -55844349 - MLT1F LTR MaLR 0 542 8 292 355 69 23 chr4 128444473 128444690 -55843972 + L2 LINE L2 2816 3042 -230 234 241 0 0 chr4 128445268 128445322 -55843340 - MER112 DNA MER1_type -14 246 193 202 343 0 15 chr4 128445775 128445842 -55842820 - L2 LINE L2 -2430 884 819 * 445 296 91 52 chr4 128445782 128445905 -55842757 + MIR SINE MIR 12 129 -133 1801 160 24 0 chr4 128445905 128446192 -55842470 + AluSx SINE Alu 1 294 -18 445 296 91 52 chr4 128446192 128446298 -55842364 + MIR SINE MIR 129 250 -12 332 164 15 0 chr4 128446300 128446367 -55842295 + CT-rich Low_complexity Low_complexity 1 68 0 2091 126 14 0 chr4 128446367 128446661 -55842001 - AluSq SINE Alu -15 298 1 1731 66 0 97 chr4 128447244 128447360 -55841302 + L1MA1 LINE L1 6038 6164 -138 2443 86 0 13 chr4 128447360 128447674 -55840988 + AluSq SINE Alu 1 310 -3 1731 66 0 97 chr4 128447674 128447846 -55840816 + L1MA1 LINE L1 6164 6298 -4 634 180 0 0 chr4 128447861 128447961 -55840701 - MER5B DNA MER1_type -78 100 1 2340 80 0 10 chr4 128448996 128449296 -55839366 + AluSq SINE Alu 1 297 -16 869 251 61 20 chr4 128449849 128450096 -55838566 + MIR SINE MIR 6 262 0 22 88 0 0 chr4 128450174 128450231 -55838431 + AT_rich Low_complexity Low_complexity 1 57 0 399 218 67 31 chr4 128450470 128450665 -55837997 - L1MC4a LINE L1 0 7808 7563 201 250 0 19 chr4 128450982 128451034 -55837628 + GA-rich Low_complexity Low_complexity 2 52 0 2258 136 0 0 chr4 128451035 128451345 -55837317 + AluSx SINE Alu 3 312 0 2070 133 0 13 chr4 128452124 128452440 -55836222 + AluSx SINE Alu 1 312 0 254 93 0 0 chr4 128452447 128452490 -55836172 + Alu SINE Alu 256 298 -2 927 74 0 0 chr4 128452610 128452731 -55835931 + AluY SINE Alu 182 302 -9 206 246 14 0 chr4 128453936 128454005 -55834657 + T-rich Low_complexity Low_complexity 6 75 0 21 0 0 0 chr4 128454132 128454153 -55834509 + AT_rich Low_complexity Low_complexity 1 21 0 245 247 79 0 chr4 128454969 128455058 -55833604 - L1ME4a LINE L1 -196 5925 5830 856 113 0 24 chr4 128455077 128455201 -55833461 - AluJb SINE Alu -191 121 1 258 293 28 9 chr4 128455232 128455338 -55833324 - L1ME4a LINE L1 -1993 5815 5708 2191 103 0 17 chr4 128455347 128455647 -55833015 + AluSx SINE Alu 1 295 -17 2229 110 17 0 chr4 128455899 128456200 -55832462 - AluSq SINE Alu -7 306 1 28239 38 38 2 chr4 128456776 128460471 -55828191 + L1P LINE L1 1 3830 -2316 2481 212 37 19 chr4 128460571 128461190 -55827472 - L1M3f LINE L1 -4685 643 14 1145 141 10 0 chr4 128461204 128461402 -55827260 + Tigger1 DNA MER2_type 2217 2416 -2 2189 139 11 6 chr4 128461411 128461770 -55826892 - MER47A DNA MER2_type 0 366 6 418 184 28 111 chr4 128461775 128461884 -55826778 - L1MEc LINE L1 -4224 2260 2143 1562 217 6 19 chr4 128461884 128462197 -55826465 - AluJo SINE Alu -3 309 1 418 184 28 111 chr4 128462197 128462310 -55826352 - L1MEc LINE L1 -4341 2143 2003 4449 211 53 42 chr4 128462667 128463120 -55825542 + L1M1 LINE L1 2151 2597 -4968 2003 139 38 19 chr4 128463120 128463486 -55825176 - THE1C LTR MaLR -2 373 1 4449 211 53 42 chr4 128463486 128464829 -55823833 + L1M1 LINE L1 2597 3965 -3600 7321 197 48 81 chr4 128464953 128466316 -55822346 + L1MA4 LINE L1 3307 4714 -3005 2531 91 72 20 chr4 128466316 128466355 -55822307 - MSTA LTR MaLR 0 428 392 2367 94 0 0 chr4 128466355 128466653 -55822009 + AluSp SINE Alu 1 298 -15 2531 91 72 20 chr4 128466653 128467018 -55821644 - MSTA LTR MaLR -36 392 3 7321 197 48 81 chr4 128467018 128469680 -55818982 + L1MA4 LINE L1 4714 7205 -514 315 224 0 0 chr4 128469683 128469759 -55818903 + (TA)n Simple_repeat Simple_repeat 1 76 0 2462 133 31 51 chr4 128469782 128470295 -55818367 + L1MA4 LINE L1 7206 7708 -11 11530 121 39 28 chr4 128470298 128472318 -55816344 - Tigger1 DNA MER2_type -184 2234 193 503 200 0 0 chr4 128472320 128472400 -55816262 + AluJ/FLAM SINE Alu 1 80 -232 26027 24 0 0 chr4 128472515 128476418 -55812244 + L1PA2 LINE L1 2273 6179 0 2306 84 3 0 chr4 128476465 128476770 -55811892 - AluSp SINE Alu 0 306 1 352 245 0 64 chr4 128477449 128477543 -55811119 - MIR SINE MIR -159 103 16 255 296 153 10 chr4 128478465 128478563 -55810099 + MIR SINE MIR 151 262 0 202 130 19 19 chr4 128479504 128479546 -55809116 + (TTATG)n Simple_repeat Simple_repeat 2 46 -9 1806 141 7 7 chr4 128479546 128479836 -55808826 - AluSx SINE Alu -22 290 1 202 130 19 19 chr4 128479836 128479847 -55808815 + (TTATG)n Simple_repeat Simple_repeat 45 55 0 21 0 0 0 chr4 128479916 128479937 -55808725 + AT_rich Low_complexity Low_complexity 1 21 0 2059 117 3 10 chr4 128480130 128480429 -55808233 - AluSx SINE Alu -15 297 1 227 231 19 0 chr4 128480643 128480695 -55807967 + GA-rich Low_complexity Low_complexity 3 55 0 32 0 0 0 chr4 128480798 128480830 -55807832 + AT_rich Low_complexity Low_complexity 1 32 0 771 143 8 0 chr4 128481237 128481356 -55807306 + FLAM_C SINE Alu 6 125 -18 244 259 0 0 chr4 128481401 128481459 -55807203 + Charlie2a DNA MER1_type 200 257 -2605 345 251 101 10 chr4 128481600 128481807 -55806855 + Charlie2a DNA MER1_type 874 1099 -1763 365 261 278 31 chr4 128481837 128482193 -55806469 + MLT1J1 LTR MaLR 1 444 -2 * 773 196 109 10 chr4 128482193 128482707 -55805955 + Charlie2a DNA MER1_type 2262 2854 -8 201 304 134 18 chr4 128482730 128482842 -55805820 + MIR SINE MIR 24 148 -114 640 270 99 57 chr4 128483711 128484096 -55804566 + L1MC4a LINE L1 5530 5930 -1878 23 0 0 0 chr4 128484235 128484258 -55804404 + AT_rich Low_complexity Low_complexity 1 23 0 332 267 73 93 chr4 128486258 128486505 -55802157 - MIR SINE MIR -20 242 1 804 190 18 0 chr4 128486743 128486906 -55801756 + L1MB4 LINE L1 4679 4844 -1302 5560 103 46 135 chr4 128486906 128486985 -55801677 + Tigger3b DNA MER2_type 1 85 -2943 2476 75 0 3 chr4 128486985 128487290 -55801372 + AluSq SINE Alu 1 304 -9 5560 103 46 135 chr4 128487290 128488553 -55800109 + Tigger3b DNA MER2_type 85 1224 -7 3060 181 37 53 chr4 128488558 128489953 -55798709 + L1MB4 LINE L1 4843 6179 -1 549 332 36 5 chr4 128490154 128490374 -55798288 - MIR SINE MIR -15 247 21 2216 115 7 0 chr4 128490416 128490712 -55797950 + AluSq SINE Alu 1 298 -15 258 191 0 0 chr4 128490717 128490759 -55797903 + MIR SINE MIR 151 192 -70 2255 92 7 0 chr4 128490967 128491259 -55797403 - AluSq SINE Alu -19 294 1 2307 95 3 0 chr4 128491857 128492151 -55796511 - AluSq SINE Alu -18 295 1 27 0 0 0 chr4 128492328 128492355 -55796307 + AT_rich Low_complexity Low_complexity 1 27 0 971 132 0 0 chr4 128492734 128492863 -55795799 - FRAM SINE Alu -52 124 1 227 237 17 0 chr4 128492927 128492986 -55795676 - MLT1L LTR MaLR -1 614 555 235 246 45 0 chr4 128492996 128493106 -55795556 - L1M4 LINE L1 -3092 3054 2940 1987 137 23 3 chr4 128493332 128493632 -55795030 + AluSx SINE Alu 1 306 -6 2235 100 3 23 chr4 128493660 128493970 -55794692 - AluSg SINE Alu -5 305 2 700 154 6 39 chr4 128493971 128494127 -55794535 + L1MC3 LINE L1 7635 7785 0 251 172 134 112 chr4 128494337 128494471 -55794191 + L2 LINE L2 1922 2058 -1256 578 198 0 0 chr4 128494504 128494615 -55794047 - Charlie4a DNA MER1_type -21 487 377 279 79 0 0 chr4 128494628 128494666 -55793996 + (TG)n Simple_repeat Simple_repeat 2 39 0 234 0 0 0 chr4 128494731 128494757 -55793905 + (TA)n Simple_repeat Simple_repeat 1 26 0 409 217 51 13 chr4 128494918 128495075 -55793587 - Charlie4a DNA MER1_type -109 399 237 2314 109 0 0 chr4 128495093 128495386 -55793276 - AluSg SINE Alu -17 293 1 1147 229 25 25 chr4 128495398 128495721 -55792941 + L1ME2 LINE L1 3943 4265 -1881 * 2342 226 100 21 chr4 128495715 128496524 -55792138 + L1ME2 LINE L1 5283 6155 -9 1732 206 0 6 chr4 128496660 128496971 -55791691 + AluJb SINE Alu 1 309 -3 366 260 48 143 chr4 128498585 128498648 -55790014 - L2 LINE L2 -8 3264 3197 1407 139 45 139 chr4 128498648 128499051 -55789611 - MLT1A1 LTR MaLR 0 365 1 366 260 48 143 chr4 128499051 128499379 -55789283 - L2 LINE L2 -75 3197 2910 234 0 0 0 chr4 128499654 128499680 -55788982 + (TGGG)n Simple_repeat Simple_repeat 3 28 0 252 290 0 0 chr4 128500624 128500686 -55787976 - L2 LINE L2 -5 3267 3206 192 97 0 0 chr4 128501017 128501048 -55787614 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 330 298 20 53 chr4 128501449 128501600 -55787062 + L1MC4a LINE L1 5792 5937 -1871 1151 228 17 4 chr4 128501608 128501840 -55786822 - MIR SINE MIR -1 261 27 2811 62 6 3 chr4 128501892 128502246 -55786416 + THE1A LTR MaLR 1 355 0 1737 129 3 77 chr4 128502764 128503135 -55785527 - MER4A LTR ERV1 0 664 263 602 102 10 10 chr4 128503135 128503233 -55785429 - MER4A LTR ERV1 -566 98 1 15885 98 51 20 chr4 128503244 128503469 -55785193 - MER4A-int LTR ERV1 -5 6593 6376 1856 148 50 3 chr4 128503469 128503766 -55784896 + AluSx SINE Alu 1 311 -1 15885 98 51 20 chr4 128503766 128506214 -55782448 - MER4A-int LTR ERV1 -222 6376 3837 4228 105 177 135 chr4 128506213 128508012 -55780650 - MER4A-int LTR ERV1 -2917 3681 1764 * 4136 104 36 16 chr4 128508028 128508428 -55780234 - MER4A-int LTR ERV1 -5570 1188 797 2236 116 0 0 chr4 128508428 128508729 -55779933 + AluSc SINE Alu 2 302 -7 4136 104 36 16 chr4 128508729 128509244 -55779418 - MER4A-int LTR ERV1 -5961 797 200 1153 229 95 3 chr4 128509299 128509583 -55779079 - MER4A-int LTR ERV1 -4163 2168 1859 2433 111 170 38 chr4 128509748 128510314 -55778348 - MER4A-int LTR ERV1 -5912 686 1 1734 100 155 92 chr4 128510317 128510697 -55777965 - MER4A LTR ERV1 0 664 261 658 101 0 10 chr4 128510697 128510796 -55777866 - MER4A LTR ERV1 -566 98 1 3817 132 25 45 chr4 128511010 128511736 -55776926 + MER50 LTR ERV1 1 711 -23 231 36 0 0 chr4 128511764 128511792 -55776870 + (CA)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr4 128512123 128512145 -55776517 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 128512172 128512193 -55776469 + AT_rich Low_complexity Low_complexity 1 21 0 2011 153 50 57 chr4 128512534 128512991 -55775671 - MLT2C2 LTR ERVL -8 456 3 21 0 0 0 chr4 128514386 128514407 -55774255 + AT_rich Low_complexity Low_complexity 1 21 0 2295 108 3 0 chr4 128515024 128515331 -55773331 + AluSp SINE Alu 2 309 -4 186 348 9 54 chr4 128515562 128515674 -55772988 - L2 LINE L2 -4 3268 3162 704 202 213 72 chr4 128516485 128516694 -55771968 + LTR2 LTR ERV1 1 267 -223 186 43 0 0 chr4 128516694 128516717 -55771945 + (TTCTG)n Simple_repeat Simple_repeat 1 23 0 704 202 213 72 chr4 128516717 128516762 -55771900 + LTR2 LTR ERV1 267 304 -186 1364 163 4 29 chr4 128516763 128517040 -55771622 + LTR2B LTR ERV1 221 490 0 9786 64 19 40 chr4 128517040 128518490 -55770172 + Harlequin LTR ERV1 1 1419 -5477 26380 62 4 3 chr4 128518510 128521846 -55766816 + Harlequin LTR ERV1 1584 4926 -1970 5607 134 30 43 chr4 128521846 128522932 -55765730 - MER11C LTR ERVK 0 1071 1 26380 62 4 3 chr4 128522932 128523077 -55765585 + Harlequin LTR ERV1 4926 5069 -1827 5487 71 12 0 chr4 128523068 128523811 -55764851 + Harlequin LTR ERV1 6135 6886 -10 * 1727 164 106 50 chr4 128523813 128524277 -55764385 + LTR2B LTR ERV1 1 490 0 300 309 109 67 chr4 128525506 128525671 -55762991 - MER5A DNA MER1_type 0 189 7 225 108 0 0 chr4 128525686 128525723 -55762939 + (TG)n Simple_repeat Simple_repeat 1 37 0 266 135 39 0 chr4 128527574 128527626 -55761036 + GA-rich Low_complexity Low_complexity 2 55 0 334 262 16 48 chr4 128528246 128528372 -55760290 + MER5B DNA MER1_type 1 122 -56 497 179 143 9 chr4 128528697 128528809 -55759853 - FLAM_A SINE Alu -6 127 1 207 170 0 0 chr4 128529163 128529210 -55759452 + A-rich Low_complexity Low_complexity 1 47 0 253 326 189 0 chr4 128529591 128529686 -55758976 + L2 LINE L2 3153 3265 -7 304 301 29 19 chr4 128529959 128530062 -55758600 + L2 LINE L2 3204 3307 -6 1980 125 48 0 chr4 128530832 128531127 -55757535 + AluSx SINE Alu 1 309 -3 24 32 0 0 chr4 128532006 128532037 -55756625 + AT_rich Low_complexity Low_complexity 1 31 0 1812 173 3 3 chr4 128532315 128532615 -55756047 - AluJo SINE Alu -12 300 1 1752 122 75 29 chr4 128532934 128533212 -55755450 - AluSx SINE Alu -21 291 1 1821 85 0 4 chr4 128533512 128533788 -55754874 + AluY SINE Alu 49 323 0 22 0 0 0 chr4 128533984 128534006 -55754656 + AT_rich Low_complexity Low_complexity 1 22 0 446 289 118 76 chr4 128534873 128534909 -55753753 + L1MC/D LINE L1 4915 4948 -1198 1886 113 0 11 chr4 128534909 128535174 -55753488 + AluSg SINE Alu 32 293 -17 446 289 118 76 chr4 128535174 128535441 -55753221 + L1MC/D LINE L1 4948 5231 -915 2390 92 3 0 chr4 128535516 128535819 -55752843 + AluSp SINE Alu 1 304 -9 887 268 75 26 chr4 128535823 128536285 -55752377 + L1MC/D LINE L1 5324 5819 -302 251 234 63 36 chr4 128536811 128536922 -55751740 + L1MEd LINE L1 1308 1421 -4951 207 0 0 0 chr4 128536942 128536965 -55751697 + (A)n Simple_repeat Simple_repeat 1 23 0 421 306 75 49 chr4 128537006 128537205 -55751457 + HAL1 LINE L1 1369 1578 -929 1653 166 35 11 chr4 128537205 128537489 -55751173 - AluJo SINE Alu -21 291 1 421 306 75 49 chr4 128537489 128537554 -55751108 + HAL1 LINE L1 1578 1640 -867 454 268 43 7 chr4 128537829 128537967 -55750695 + MER91B DNA MER1_type 36 178 -12 417 328 116 10 chr4 128538020 128538362 -55750300 + L1MEd LINE L1 2186 2566 -3816 236 291 119 104 chr4 128538470 128538738 -55749924 + L2 LINE L2 2962 3233 -80 23 33 0 0 chr4 128539723 128539753 -55748909 + AT_rich Low_complexity Low_complexity 1 30 0 241 333 0 15 chr4 128539835 128539901 -55748761 + MIR SINE MIR 34 98 -164 268 163 0 0 chr4 128540033 128540076 -55748586 + tRNA-Met-e tRNA tRNA 1 43 -32 544 158 122 0 chr4 128540087 128540226 -55748436 + MER3 DNA MER1_type 49 204 -5 2184 107 7 13 chr4 128540249 128540549 -55748113 - AluSx SINE Alu -14 298 1 1039 97 0 0 chr4 128540566 128540700 -55747962 - AluSq/x SINE Alu -179 134 1 219 361 56 0 chr4 128540871 128540979 -55747683 + MIR SINE MIR 84 197 -65 2060 110 0 17 chr4 128541718 128542018 -55746644 - AluSx SINE Alu -17 295 1 342 304 139 51 chr4 128544132 128544464 -55744198 + L1M2 LINE L1 526 886 -5963 742 141 225 0 chr4 128545724 128545937 -55742725 - MER58B DNA MER1_type 0 341 81 372 244 39 24 chr4 128546042 128546169 -55742493 + MER94 DNA DNA 6 134 0 297 302 10 0 chr4 128546350 128546446 -55742216 - MLT1L LTR MaLR -366 249 153 347 267 87 20 chr4 128546471 128546621 -55742041 - MER20B DNA MER1_type -620 163 4 228 227 53 40 chr4 128546707 128546782 -55741880 - MLT1L LTR MaLR -538 77 2 183 353 15 0 chr4 128546958 128547026 -55741636 + L2 LINE L2 2600 2668 -646 21 0 0 0 chr4 128547529 128547550 -55741112 + AT_rich Low_complexity Low_complexity 1 21 0 483 286 130 5 chr4 128547694 128547886 -55740776 + MLT1I LTR MaLR 3 218 -191 521 281 183 38 chr4 128547891 128548367 -55740295 - MLT1H1 LTR MaLR 0 555 11 1393 216 126 18 chr4 128549756 128550069 -55738593 - Charlie2 DNA MER1_type -72 2790 2512 2032 116 32 7 chr4 128550069 128550353 -55738309 + AluSq SINE Alu 1 291 -22 1393 216 126 18 chr4 128550353 128550594 -55738068 - Charlie2 DNA MER1_type -350 2512 2176 2487 240 122 27 chr4 128550595 128551567 -55737095 - Charlie2b DNA MER1_type -1526 1256 192 415 310 28 0 chr4 128551669 128551811 -55736851 - Charlie2b DNA MER1_type -2715 147 2 1284 295 57 34 chr4 128553320 128554148 -55734514 + L2 LINE L2 2462 3313 0 328 294 59 39 chr4 128554529 128554682 -55733980 - L2 LINE L2 0 3313 3158 234 0 0 0 chr4 128555398 128555424 -55733238 + (CCA)n Simple_repeat Simple_repeat 1 26 0 443 239 224 25 chr4 128555541 128555742 -55732920 - MIR SINE MIR -21 241 1 238 258 124 10 chr4 128555765 128555862 -55732800 - L1MC/D LINE L1 -1988 5820 5713 355 294 45 106 chr4 128555866 128556427 -55732235 - L1MC/D LINE L1 -478 5643 5114 2207 163 15 54 chr4 128557372 128557833 -55730829 - L1MA7 LINE L1 -1 6290 5848 1504 111 0 0 chr4 128557839 128558047 -55730615 - L1MA7 LINE L1 -528 5763 5556 21 36 0 0 chr4 128558488 128558516 -55730146 + AT_rich Low_complexity Low_complexity 1 28 0 477 0 0 0 chr4 128558543 128558596 -55730066 + (TG)n Simple_repeat Simple_repeat 1 53 0 739 222 23 92 chr4 128558734 128558876 -55729786 - Charlie8 DNA MER1_type -2089 328 211 729 191 137 18 chr4 128558876 128559044 -55729618 + MER5A DNA MER1_type 2 189 0 739 222 23 92 chr4 128559044 128559162 -55729500 - Charlie8 DNA MER1_type -2206 211 86 497 30 15 0 chr4 128559340 128559407 -55729255 + (GA)n Simple_repeat Simple_repeat 2 69 0 349 312 31 53 chr4 128559499 128559732 -55728930 - MIR SINE MIR -21 241 14 21 0 0 0 chr4 128560762 128560783 -55727879 + AT_rich Low_complexity Low_complexity 1 21 0 194 204 0 19 chr4 128561594 128561648 -55727014 + (TA)n Simple_repeat Simple_repeat 2 54 0 185 65 32 0 chr4 128561653 128561684 -55726978 + (CA)n Simple_repeat Simple_repeat 2 33 0 605 230 68 0 chr4 128561685 128561846 -55726816 - MIR SINE MIR -74 188 17 702 279 79 0 chr4 128561970 128562160 -55726502 - MIR SINE MIR -1 261 57 295 336 109 23 chr4 128562776 128562996 -55725666 - L2 LINE L2 -16 3256 3018 2266 115 0 0 chr4 128563142 128563438 -55725224 - AluSq SINE Alu -17 296 1 353 247 0 13 chr4 128563438 128563515 -55725147 - Tigger3(Golem) DNA MER2_type -2953 76 1 24 32 0 0 chr4 128563668 128563699 -55724963 + AT_rich Low_complexity Low_complexity 1 31 0 1924 131 3 39 chr4 128565348 128565653 -55723009 - AluSx SINE Alu -18 294 1 257 301 113 32 chr4 128565963 128566098 -55722564 + MER5A DNA MER1_type 29 184 -5 261 0 0 0 chr4 128566393 128566422 -55722240 + (TG)n Simple_repeat Simple_repeat 1 29 0 1079 62 0 0 chr4 128567615 128567745 -55720917 - AluSg/x SINE Alu -6 306 177 351 344 55 0 chr4 128568322 128568505 -55720157 - MIR SINE MIR -25 237 45 375 278 192 13 chr4 128568842 128568993 -55719669 - MIR3 SINE MIR -15 193 16 420 216 45 36 chr4 128569027 128569138 -55719524 - L1ME2 LINE L1 -40 6124 6013 2360 95 0 0 chr4 128569555 128569850 -55718812 + AluSx SINE Alu 1 295 -17 279 0 0 0 chr4 128570048 128570079 -55718583 + (TG)n Simple_repeat Simple_repeat 1 31 0 * 303 49 0 0 chr4 128570078 128570119 -55718543 + (GA)n Simple_repeat Simple_repeat 1 41 0 26 74 0 0 chr4 128570475 128570529 -55718133 + AT_rich Low_complexity Low_complexity 1 54 0 2496 73 0 0 chr4 128570620 128570920 -55717742 - AluY SINE Alu -11 300 1 2004 250 43 78 chr4 128570970 128571194 -55717468 - L1MC4 LINE L1 -1 8041 7811 1846 154 7 10 chr4 128571194 128571487 -55717175 - AluJb SINE Alu -20 292 1 2004 250 43 78 chr4 128571487 128571800 -55716862 - L1MC4 LINE L1 -231 7811 7543 1587 171 44 7 chr4 128571800 128572075 -55716587 - AluJo SINE Alu -25 287 3 2004 250 43 78 chr4 128572075 128572391 -55716271 - L1MC4 LINE L1 -499 7543 7217 191 276 35 126 chr4 128572634 128572808 -55715854 + L2 LINE L2 3103 3260 -12 3075 164 113 154 chr4 128573604 128573887 -55714775 - L1MC3 LINE L1 -1 7784 7491 1496 173 120 84 chr4 128573887 128574269 -55714393 + MSTD LTR MaLR 1 396 0 3075 164 113 154 chr4 128574269 128574616 -55714046 - L1MC3 LINE L1 -294 7491 7131 226 182 45 136 chr4 128574616 128574726 -55713936 - MLT1F1 LTR MaLR -433 134 35 3075 164 113 154 chr4 128574726 128575100 -55713562 - L1MC3 LINE L1 -654 7131 6716 418 231 0 0 chr4 128575216 128575294 -55713368 + MER81 DNA DNA 1 78 -36 493 328 47 13 chr4 128575318 128575550 -55713112 - MLT1K LTR MaLR -3 585 346 559 300 148 23 chr4 128575598 128575901 -55712761 - MER102b DNA MER1_type 0 341 1 756 277 43 36 chr4 128576028 128576281 -55712381 - MIR SINE MIR 0 262 8 2338 84 3 6 chr4 128576330 128576641 -55712021 + AluY SINE Alu 1 310 -1 514 250 21 36 chr4 128576672 128576812 -55711850 - MIR3 SINE MIR -15 193 56 515 210 19 12 chr4 128577126 128577137 -55711525 + CT-rich Low_complexity Low_complexity 2 11 -153 279 0 0 0 chr4 128577137 128577168 -55711494 + (TTCTC)n Simple_repeat Simple_repeat 1 31 0 515 210 19 12 chr4 128577168 128577318 -55711344 + CT-rich Low_complexity Low_complexity 11 164 0 1776 154 7 4 chr4 128577320 128577593 -55711069 - AluJb SINE Alu -38 274 1 210 37 0 0 chr4 128577790 128577817 -55710845 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1862 110 20 0 chr4 128577822 128578077 -55710585 - AluSx SINE Alu -52 260 1 342 0 0 0 chr4 128578535 128578573 -55710089 + (TG)n Simple_repeat Simple_repeat 1 38 0 247 254 0 0 chr4 128579149 128579204 -55709458 + CT-rich Low_complexity Low_complexity 2 56 0 230 182 23 0 chr4 128579204 128579248 -55709414 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 203 0 0 36 chr4 128579546 128579574 -55709088 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 3340 315 67 45 chr4 128579979 128580308 -55708354 + L2 LINE L2 80 400 -2914 4034 147 17 16 chr4 128580308 128580940 -55707722 + MER41B LTR ERV1 1 633 -2 3340 315 67 45 chr4 128580940 128582487 -55706175 + L2 LINE L2 400 1997 -1317 684 286 83 9 chr4 128582887 128583053 -55705609 + MIR SINE MIR 18 205 -57 1783 122 54 7 chr4 128583053 128583331 -55705331 + AluJo SINE Alu 1 291 -21 684 286 83 9 chr4 128583331 128583381 -55705281 + MIR SINE MIR 205 250 -12 611 328 56 64 chr4 128583580 128584080 -55704582 - LTR67 LTR ERVL 0 557 62 316 262 48 32 chr4 128584157 128584283 -55704379 + MLT1K LTR MaLR 434 561 -27 502 343 56 22 chr4 128584334 128584704 -55703958 + L2 LINE L2 2611 3001 -271 405 205 0 0 chr4 128584769 128584847 -55703815 + L2 LINE L2 3189 3266 -47 2292 128 64 73 chr4 128584974 128585410 -55703252 + MSTB1 LTR MaLR 1 432 0 4974 164 28 16 chr4 128585410 128586401 -55702261 + L1MB3 LINE L1 5179 6181 -2 487 205 115 16 chr4 128586433 128586555 -55702107 + L2 LINE L2 3180 3313 0 186 258 52 62 chr4 128586662 128586759 -55701903 + MIR SINE MIR 96 191 -71 884 280 55 88 chr4 128588100 128588625 -55700037 - MLT1K LTR MaLR 0 588 81 270 176 0 0 chr4 128589248 128589299 -55699363 + (TATATG)n Simple_repeat Simple_repeat 3 53 0 292 71 36 0 chr4 128590118 128590174 -55698488 + (CAA)n Simple_repeat Simple_repeat 2 59 0 480 300 145 6 chr4 128590325 128590733 -55697929 - L2 LINE L2 -140 3173 2713 700 331 43 22 chr4 128591481 128591804 -55696858 + LTR16C LTR ERVL 158 487 -4 357 311 45 23 chr4 128591804 128591981 -55696681 - L1ME LINE L1 -315 5806 5626 261 0 0 0 chr4 128592018 128592047 -55696615 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1863 149 0 3 chr4 128592049 128592331 -55696331 - AluJo SINE Alu -31 281 1 1584 171 7 11 chr4 128593234 128593503 -55695159 - AluSx SINE Alu -8 304 37 390 202 18 97 chr4 128594116 128594144 -55694518 + L2 LINE L2 3208 3237 -76 2335 105 0 6 chr4 128594144 128594459 -55694203 - AluSq SINE Alu 0 313 1 390 202 18 97 chr4 128594459 128594544 -55694118 + L2 LINE L2 3237 3312 -1 373 302 26 17 chr4 128595108 128595224 -55693438 + MIR3 SINE MIR 85 201 -7 820 150 0 0 chr4 128595995 128596122 -55692540 + FLAM_C SINE Alu 11 137 -6 2291 104 0 22 chr4 128597229 128597546 -55691116 + AluSg SINE Alu 1 310 0 2051 136 168 27 chr4 128597900 128598275 -55690387 + MSTA LTR MaLR 1 428 0 1809 130 4 0 chr4 128598617 128598870 -55689792 - AluSx SINE Alu -58 254 1 804 209 45 108 chr4 128599024 128599359 -55689303 - HAL1 LINE L1 -193 2314 2001 980 186 149 0 chr4 128599368 128599562 -55689100 + MER58A DNA MER1_type 1 223 -1 2192 244 44 42 chr4 128599564 128600008 -55688654 - HAL1 LINE L1 -501 2006 1559 1833 160 10 19 chr4 128600008 128600315 -55688347 - AluJo SINE Alu -6 306 3 2192 244 44 42 chr4 128600315 128600602 -55688060 - HAL1 LINE L1 -948 1559 1274 1066 125 87 33 chr4 128600645 128600829 -55687833 - Tigger2a DNA MER2_type -240 194 1 8052 31 0 11 chr4 128600982 128602287 -55686375 - L1PA5 LINE L1 -4 6150 4852 204 158 0 0 chr4 128602347 128602385 -55686277 + (ATG)n Simple_repeat Simple_repeat 3 40 0 212 121 207 17 chr4 128602396 128602454 -55686208 + MIR SINE MIR 169 237 -25 413 255 47 19 chr4 128603152 128603258 -55685404 + L2 LINE L2 3199 3307 -6 2245 126 0 0 chr4 128603454 128603756 -55684906 - AluSx SINE Alu -10 302 1 244 164 0 0 chr4 128603957 128604012 -55684650 - L1MB4 LINE L1 0 6180 6126 1371 193 40 25 chr4 128604082 128604356 -55684306 - AluJo SINE Alu -34 278 1 3526 173 27 19 chr4 128604357 128605034 -55683628 - L1MB5 LINE L1 -33 6141 5460 2492 71 0 0 chr4 128605879 128606173 -55682489 + AluSq SINE Alu 1 294 -19 208 191 24 0 chr4 128606716 128606758 -55681904 - L2 LINE L2 -9 3304 3262 2486 217 12 27 chr4 128606962 128607597 -55681065 + LTR27 LTR ERV1 3 661 -128 1796 201 6 12 chr4 128607573 128607906 -55680756 + LTR28 LTR ERV1 684 1014 -6 * 270 363 36 45 chr4 128607917 128608140 -55680522 - L2 LINE L2 -373 2941 2721 2804 139 78 43 chr4 128608260 128608815 -55679847 + MER4B LTR ERV1 1 574 -36 228 274 69 29 chr4 128608843 128608945 -55679717 + MER5A DNA MER1_type 84 189 0 225 294 179 34 chr4 128608945 128609165 -55679497 - L2 LINE L2 -623 2691 2438 24 0 0 0 chr4 128609221 128609245 -55679417 + AT_rich Low_complexity Low_complexity 1 24 0 546 174 174 0 chr4 128609803 128609918 -55678744 + MLT1J2 LTR MaLR 67 201 -249 274 239 83 55 chr4 128609984 128610093 -55678569 + MLT1J2 LTR MaLR 339 450 0 2366 90 0 3 chr4 128610157 128610456 -55678206 + AluSg SINE Alu 1 298 -12 429 307 26 0 chr4 128610645 128610759 -55677903 + MIR SINE MIR 124 240 -22 426 196 87 80 chr4 128611274 128611412 -55677250 + MIR3 SINE MIR 40 178 -30 447 111 49 49 chr4 128611593 128611674 -55676988 - L1MB8 LINE L1 0 6178 6098 859 264 107 44 chr4 128612704 128613207 -55675455 - L1ME4a LINE L1 -9 6112 5578 872 244 160 30 chr4 128613340 128613672 -55674990 + LTR16C LTR ERVL 117 491 0 2501 167 58 44 chr4 128613695 128614193 -55674469 + MLT1D LTR MaLR 1 505 0 425 287 67 40 chr4 128614513 128614663 -55673999 - MER5A DNA MER1_type -31 158 5 221 349 12 12 chr4 128615587 128615673 -55672989 - MIR SINE MIR -70 192 107 392 329 138 14 chr4 128616141 128616424 -55672238 + L3b LINE CR1 1149 1466 -117 818 163 6 50 chr4 128616527 128616687 -55671975 - L1MD3 LINE L1 -10 7985 7833 290 265 0 0 chr4 128617033 128617101 -55671561 + L2 LINE L2 3239 3306 -7 2230 103 0 17 chr4 128617101 128617402 -55671260 + AluSq SINE Alu 1 296 -17 482 261 113 77 chr4 128617430 128617767 -55670895 + L2 LINE L2 2965 3313 0 25 0 0 0 chr4 128618189 128618214 -55670448 + AT_rich Low_complexity Low_complexity 1 25 0 2324 180 39 49 chr4 128618582 128619092 -55669570 + MLT1D LTR MaLR 1 505 0 276 325 135 35 chr4 128619615 128620099 -55668563 - L2 LINE L2 -219 3053 2513 1938 175 25 19 chr4 128620402 128620762 -55667900 - MLT1A1 LTR MaLR 0 365 4 201 364 133 0 chr4 128621350 128621523 -55667139 - L2 LINE L2 -2499 815 620 1084 201 146 50 chr4 128621956 128622374 -55666288 - MLT1C LTR MaLR -9 458 1 200 386 43 21 chr4 128623359 128623499 -55665163 + MIR3 SINE MIR 16 158 -50 1243 151 151 52 chr4 128623828 128624099 -55664563 + AluJb SINE Alu 1 298 -14 622 289 15 62 chr4 128624540 128624800 -55663862 + MIR SINE MIR 12 259 -3 293 315 0 11 chr4 128624801 128624890 -55663772 + MIR SINE MIR 159 246 -16 2857 77 6 0 chr4 128624941 128625294 -55663368 - THE1A LTR MaLR 0 355 1 12712 83 8 1 chr4 128625294 128626862 -55661800 - THE1A-int LTR MaLR 0 1580 1 2900 73 3 3 chr4 128626862 128627217 -55661445 - THE1A LTR MaLR 0 355 1 547 233 28 57 chr4 128627241 128627417 -55661245 - MIR SINE MIR -89 173 3 554 345 81 5 chr4 128627456 128627685 -55660977 + MIR SINE MIR 12 254 -8 555 213 264 15 chr4 128628777 128628974 -55659688 + MIR SINE MIR 16 261 -1 314 379 50 7 chr4 128629332 128629472 -55659190 - L2 LINE L2 0 3272 3127 2127 100 7 0 chr4 128629556 128629948 -55658714 - AluSq SINE Alu 0 394 1 790 283 61 20 chr4 128631124 128631371 -55657291 - MIR SINE MIR 0 262 6 181 256 23 0 chr4 128632571 128632614 -55656048 + MIR SINE MIR 83 126 -82 599 300 23 5 chr4 128632633 128632848 -55655814 - MIR SINE MIR -10 252 36 357 113 25 138 chr4 128632878 128632958 -55655704 - L1MA5 LINE L1 -23 6277 6207 2011 121 54 85 chr4 128632958 128633345 -55655317 - THE1C LTR MaLR 0 375 1 9658 117 73 11 chr4 128633345 128634831 -55653831 - THE1C-int LTR MaLR 0 1580 3 1642 132 181 28 chr4 128634833 128635158 -55653504 - THE1C LTR MaLR 0 375 1 324 191 15 0 chr4 128635159 128635227 -55653435 - L1MA5 LINE L1 -99 6201 6133 35 41 0 0 chr4 128636175 128636224 -55652438 + AT_rich Low_complexity Low_complexity 1 49 0 240 260 90 50 chr4 128636461 128636561 -55652101 - L2 LINE L2 0 3272 3169 188 217 17 33 chr4 128637187 128637247 -55651415 - MER5A DNA MER1_type -63 126 68 239 333 69 0 chr4 128637900 128637987 -55650675 + MIR SINE MIR 83 175 -87 188 283 119 31 chr4 128638371 128638530 -55650132 + MIR SINE MIR 64 236 -26 534 63 0 158 chr4 128639607 128639702 -55648960 + MADE1 DNA Mariner 1 80 0 2196 111 0 20 chr4 128639796 128640102 -55648560 + AluSx SINE Alu 1 300 -12 1402 188 48 7 chr4 128640209 128640480 -55648182 + AluJo SINE Alu 1 282 -30 249 57 0 0 chr4 128640483 128640518 -55648144 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 939 199 0 6 chr4 128640518 128640694 -55647968 + FRAM SINE Alu 1 169 -7 441 263 32 119 chr4 128640738 128640989 -55647673 - L2 LINE L2 0 3272 3044 664 313 44 0 chr4 128642130 128642357 -55646305 + MIR SINE MIR 23 259 -3 392 235 311 25 chr4 128642541 128642737 -55645925 + MIR SINE MIR 2 253 -9 467 335 22 22 chr4 128643155 128643334 -55645328 - MER5A DNA MER1_type -4 185 7 918 132 231 28 chr4 128644296 128644478 -55644184 - MER20 DNA MER1_type 0 219 1 673 211 105 0 chr4 128644537 128644689 -55643973 - MIR SINE MIR -14 248 81 512 199 32 39 chr4 128646056 128646212 -55642450 - L1ME4a LINE L1 0 6121 5967 429 20 0 0 chr4 128646422 128646472 -55642190 + (TG)n Simple_repeat Simple_repeat 2 51 0 628 267 79 0 chr4 128647399 128647601 -55641061 - MIR SINE MIR -24 238 21 294 195 218 35 chr4 128647623 128647710 -55640952 + MIR SINE MIR 39 141 -67 294 313 50 20 chr4 128649155 128649254 -55639408 - L2 LINE L2 -9 3304 3203 840 158 0 0 chr4 128649384 128649504 -55639158 + FLAM_C SINE Alu 1 120 -23 184 308 56 47 chr4 128650580 128650687 -55637975 + L2 LINE L2 2935 3042 -230 1957 111 68 4 chr4 128650902 128651181 -55637481 + AluSx SINE Alu 1 297 -15 326 326 92 15 chr4 128652177 128652373 -55636289 - HAL1 LINE L1 -14 2493 2283 298 276 26 58 chr4 128652523 128652679 -55635983 - HAL1b LINE L1 -452 896 746 4243 153 14 1 chr4 128653201 128653870 -55634792 - L1PA16 LINE L1 -5 6161 5485 5923 90 15 11 chr4 128653863 128654812 -55633850 - L1PB1 LINE L1 0 6867 5916 2260 137 8 6 chr4 128654837 128655202 -55633460 - L1PB1 LINE L1 -3 6864 6499 288 200 0 0 chr4 128655202 128655262 -55633400 + (TATATG)n Simple_repeat Simple_repeat 2 61 0 14022 186 31 4 chr4 128655274 128660201 -55628461 - L1PB1 LINE L1 -360 6507 1451 3031 212 85 34 chr4 128660214 128661198 -55627464 - L1PB1 LINE L1 -5821 1042 8 17376 154 40 9 chr4 128661214 128661481 -55627181 - L1PB1 LINE L1 -939 5923 5666 509 111 0 12 chr4 128661481 128661562 -55627100 + MADE1 DNA Mariner 1 80 0 17376 154 40 9 chr4 128661562 128662095 -55626567 - L1PB1 LINE L1 -1196 5666 5151 234 0 0 0 chr4 128662095 128662121 -55626541 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 17376 154 40 9 chr4 128662121 128664113 -55624549 - L1PB1 LINE L1 -1711 5151 3223 2285 82 0 4 chr4 128664113 128664414 -55624248 - AluY SINE Alu 0 300 1 17376 154 40 9 chr4 128664414 128666336 -55622326 - L1PB1 LINE L1 -3639 3223 992 2278 122 3 0 chr4 128666336 128666648 -55622014 + AluSp SINE Alu 1 313 0 17376 154 40 9 chr4 128666648 128667669 -55620993 - L1PB1 LINE L1 -5870 992 4 13950 214 24 18 chr4 128667674 128672119 -55616543 - L1P4 LINE L1 -674 6194 1635 240 35 0 0 chr4 128672119 128672148 -55616514 + (TTCTCC)n Simple_repeat Simple_repeat 3 31 0 13950 214 24 18 chr4 128672148 128672358 -55616304 - L1P4 LINE L1 -5233 1635 1428 1008 255 12 43 chr4 128672799 128673124 -55615538 - L1P4 LINE L1 -6083 766 452 333 365 35 9 chr4 128673156 128673271 -55615391 - L1M2 LINE L1 -6066 783 666 234 310 18 26 chr4 128673413 128673526 -55615136 - L1M2 LINE L1 -6072 777 666 961 311 32 25 chr4 128673621 128674026 -55614636 - L1M2 LINE L1 -6399 450 43 253 287 118 18 chr4 128674224 128674338 -55614324 - MIR SINE MIR -83 125 38 354 286 36 27 chr4 128674386 128674498 -55614164 - L3b LINE CR1 -187 1396 1284 189 224 82 20 chr4 128675703 128675752 -55612910 - L2 LINE L2 0 3313 3262 525 253 89 50 chr4 128677049 128677251 -55611411 + MIR SINE MIR 47 256 -6 3665 79 42 0 chr4 128678568 128679074 -55609588 - L1PA12 LINE L1 0 6168 5642 702 185 37 0 chr4 128679239 128679401 -55609261 + L1P LINE L1 2386 2553 -3593 1866 220 20 75 chr4 128679401 128679987 -55608675 - MLT2B3 LTR ERVL 0 554 1 2616 171 12 19 chr4 128679987 128680572 -55608090 - HERVL-B3 LTR ERVL 0 5654 5074 249 250 38 0 chr4 128680713 128680793 -55607869 + CT-rich Low_complexity Low_complexity 1 83 0 473 241 135 7 chr4 128681442 128681583 -55607079 + Charlie8 DNA MER1_type 77 235 -2182 968 229 129 25 chr4 128682062 128682425 -55606237 + MLT1I LTR MaLR 5 405 -4 182 338 113 13 chr4 128683584 128683735 -55604927 + MIR SINE MIR 63 228 -34 785 285 52 20 chr4 128683836 128684085 -55604577 - MIR SINE MIR 0 262 6 387 244 115 62 chr4 128686558 128686799 -55601863 - MIR SINE MIR 0 262 14 202 353 52 15 chr4 128686795 128686931 -55601731 + L2 LINE L2 2716 2856 -458 * 339 264 110 25 chr4 128688929 128689092 -55599570 + L1 LINE L1 3084 3260 -2886 234 202 34 50 chr4 128689103 128689222 -55599440 + (CAAA)n Simple_repeat Simple_repeat 3 119 0 318 228 17 44 chr4 128689300 128689532 -55599130 + A-rich Low_complexity Low_complexity 1 225 0 1896 158 0 10 chr4 128690163 128690466 -55598196 + AluSg SINE Alu 3 302 -8 1430 145 0 5 chr4 128691369 128691583 -55597079 + AluJo SINE Alu 1 213 -99 232 378 162 0 chr4 128692590 128692701 -55595961 + L2 LINE L2 3137 3265 -7 304 301 29 19 chr4 128692974 128693077 -55595585 + L2 LINE L2 3204 3307 -6 1953 127 48 0 chr4 128693849 128694141 -55594521 + AluSx SINE Alu 1 306 -6 202 245 39 20 chr4 128694568 128694670 -55593992 + (CACAA)n Simple_repeat Simple_repeat 5 108 0 213 182 0 0 chr4 128694779 128694834 -55593828 + T-rich Low_complexity Low_complexity 1 55 0 1449 187 63 12 chr4 128695007 128695435 -55593227 - L1P LINE L1 -744 5424 4975 241 262 49 0 chr4 128695457 128695518 -55593144 + L2 LINE L2 3203 3266 -6 2506 79 0 0 chr4 128697050 128697353 -55591309 + AluY SINE Alu 1 303 -8 1456 150 0 0 chr4 128697528 128697768 -55590894 + L1MA9 LINE L1 5554 5793 -519 1233 220 38 40 chr4 128697937 128698337 -55590325 + L1MA9 LINE L1 5795 6193 -119 656 233 114 53 chr4 128698713 128698905 -55589757 + MLT1G1 LTR MaLR 335 547 -48 4289 129 31 8 chr4 128698905 128699619 -55589043 - L1MA7 LINE L1 -6 6285 5556 656 233 114 53 chr4 128699619 128699671 -55588991 + MLT1G1 LTR MaLR 547 594 -1 313 260 31 0 chr4 128699672 128699768 -55588894 + L2 LINE L2 2013 2111 -1203 427 200 12 61 chr4 128699790 128699955 -55588707 - L1MC5 LINE L1 -50 7911 7755 326 217 96 0 chr4 128699956 128700039 -55588623 + L2 LINE L2 2153 2243 -1071 932 244 9 22 chr4 128700054 128700284 -55588378 + MIR SINE MIR 5 231 -31 583 236 109 47 chr4 128700305 128700581 -55588081 + L2 LINE L2 2240 2532 -782 204 149 15 45 chr4 128700862 128700929 -55587733 + (CACAA)n Simple_repeat Simple_repeat 3 67 0 846 158 0 0 chr4 128702290 128702410 -55586252 - FLAM_C SINE Alu -23 120 1 299 313 50 20 chr4 128702540 128702639 -55586023 + L2 LINE L2 3203 3304 -9 301 195 218 35 chr4 128704088 128704175 -55584487 - MIR SINE MIR -67 141 39 630 267 79 0 chr4 128704197 128704399 -55584263 + MIR SINE MIR 21 238 -24 429 20 0 0 chr4 128705337 128705387 -55583275 + (CA)n Simple_repeat Simple_repeat 2 51 0 444 193 36 21 chr4 128705597 128705737 -55582925 + L1ME4a LINE L1 5967 6108 -13 680 211 105 0 chr4 128707120 128707272 -55581390 + MIR SINE MIR 81 248 -14 837 132 231 28 chr4 128707331 128707513 -55581149 + MER20 DNA MER1_type 1 219 0 480 335 22 22 chr4 128708475 128708654 -55580008 + MER5A DNA MER1_type 7 185 -4 400 235 311 25 chr4 128709072 128709268 -55579394 - MIR SINE MIR -9 253 2 675 313 44 0 chr4 128709452 128709679 -55578983 - MIR SINE MIR -3 259 23 451 263 32 119 chr4 128710820 128711071 -55577591 + L2 LINE L2 3044 3272 0 952 199 0 6 chr4 128711115 128711291 -55577371 - FRAM SINE Alu -7 169 1 249 57 0 0 chr4 128711291 128711326 -55577336 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1421 188 48 7 chr4 128711329 128711600 -55577062 - AluJo SINE Alu -30 282 1 1946 140 0 20 chr4 128711707 128712007 -55576655 - AluSx SINE Alu -12 300 7 17325 109 66 11 chr4 128712008 128713936 -55574726 - L1PBa LINE L1 -3750 3112 967 2278 122 3 0 chr4 128713936 128714248 -55574414 + AluSp SINE Alu 1 313 0 17325 109 66 11 chr4 128714248 128715269 -55573393 - L1PBa LINE L1 -5895 967 4 7136 177 34 5 chr4 128715274 128716977 -55571685 - L1P4 LINE L1 -674 5491 3749 9289 137 15 48 chr4 128717133 128717634 -55571028 + MSTA-int LTR MaLR 5 521 -1059 2160 151 0 0 chr4 128717634 128717939 -55570723 + AluSx SINE Alu 1 305 -7 9289 137 15 48 chr4 128717939 128719067 -55569595 + MSTA-int LTR MaLR 521 1580 0 1982 145 135 5 chr4 128719067 128719446 -55569216 + MSTA LTR MaLR 1 428 0 9139 206 40 13 chr4 128719447 128721543 -55567119 + L1 LINE L1 2550 4720 -1426 296 24 24 0 chr4 128721543 128721584 -55567078 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 9139 206 40 13 chr4 128721584 128721892 -55566770 + L1 LINE L1 4720 5018 -1128 * 22267 58 2 1 chr4 128721889 128724837 -55563825 + L1P LINE L1 8 2960 -3186 4757 154 20 0 chr4 128724942 128726204 -55562458 - L1P4 LINE L1 -496 5669 4380 21 0 0 0 chr4 128726209 128726230 -55562432 + AT_rich Low_complexity Low_complexity 1 21 0 6249 127 12 16 chr4 128726230 128727544 -55561118 - L1MA2 LINE L1 -4 6300 4992 3995 132 44 15 chr4 128727535 128728226 -55560436 - L1PA12 LINE L1 -1 6171 5397 * 2304 118 3 0 chr4 128728226 128728532 -55560130 - AluSg SINE Alu -3 307 1 3995 132 44 15 chr4 128728532 128728968 -55559694 - L1PA12 LINE L1 -775 5397 4975 241 262 49 0 chr4 128728990 128729051 -55559611 + L2 LINE L2 3203 3266 -6 441 310 81 6 chr4 128730007 128730181 -55558481 + MIR SINE MIR 2 188 -74 2638 187 47 14 chr4 128730230 128730787 -55557875 + MER90 LTR ERV1 1 575 0 350 269 46 9 chr4 128730850 128730958 -55557704 + MIR3 SINE MIR 85 196 -12 362 296 10 10 chr4 128731771 128731869 -55556793 + MER81 DNA DNA 1 98 -16 30 27 0 0 chr4 128732788 128732825 -55555837 + AT_rich Low_complexity Low_complexity 1 37 0 413 243 195 18 chr4 128732876 128733148 -55555514 - L1ME4a LINE L1 -24 6097 5778 995 235 80 31 chr4 128733541 128734116 -55554546 + LTR41 LTR ERVL 10 668 -105 363 157 98 0 chr4 128734132 128734234 -55554428 - L1PA13 LINE L1 -6 6157 6046 18833 33 1 0 chr4 128734466 128736860 -55551802 + L1P LINE L1 2741 5137 -1009 228 35 0 0 chr4 128737811 128737840 -55550822 + (CA)n Simple_repeat Simple_repeat 2 30 0 190 221 88 44 chr4 128738101 128738169 -55550493 + L3b LINE CR1 1297 1367 -216 44 80 0 0 chr4 128739696 128739796 -55548866 + AT_rich Low_complexity Low_complexity 1 100 0 210 71 0 0 chr4 128739848 128739876 -55548786 + (TA)n Simple_repeat Simple_repeat 1 28 0 1113 210 64 11 chr4 128740180 128740660 -55548002 + MLT1E LTR MaLR 2 593 0 235 71 48 0 chr4 128741710 128741752 -55546910 + (TG)n Simple_repeat Simple_repeat 1 44 0 804 281 43 16 chr4 128741844 128742097 -55546565 + MIR SINE MIR 2 261 -1 1756 219 90 11 chr4 128742245 128742702 -55545960 + L2 LINE L2 2137 2629 -685 21 36 0 0 chr4 128742707 128742735 -55545927 + AT_rich Low_complexity Low_complexity 1 28 0 3265 227 116 48 chr4 128742763 128744072 -55544590 - L1MC4 LINE L1 -182 7860 6463 1703 236 47 25 chr4 128744302 128744951 -55543711 + L2 LINE L2 2654 3308 -5 253 230 23 46 chr4 128744964 128745051 -55543611 - MIR SINE MIR -109 153 69 268 255 20 20 chr4 128745489 128745591 -55543071 + L1M4 LINE L1 5685 5786 -392 487 234 0 28 chr4 128745665 128745772 -55542890 - MIR SINE MIR -1 261 158 4386 203 47 8 chr4 128745827 128747078 -55541584 + L1PA13 LINE L1 1259 2565 -4232 305 191 29 29 chr4 128747651 128747719 -55540943 - L1M2a LINE L1 -5117 2051 1984 195 69 0 0 chr4 128748384 128748413 -55540249 + (T)n Simple_repeat Simple_repeat 1 29 0 228 35 0 0 chr4 128748534 128748563 -55540099 + (CA)n Simple_repeat Simple_repeat 2 30 0 190 221 88 44 chr4 128748823 128748891 -55539771 + L3b LINE CR1 1297 1367 -216 25 0 0 0 chr4 128750416 128750441 -55538221 + AT_rich Low_complexity Low_complexity 1 25 0 21 82 0 0 chr4 128750458 128750507 -55538155 + AT_rich Low_complexity Low_complexity 1 49 0 28 86 0 0 chr4 128750663 128750733 -55537929 + AT_rich Low_complexity Low_complexity 1 70 0 277 286 97 22 chr4 128750752 128751196 -55537466 - L1M4 LINE L1 -2373 3773 3297 885 108 16 0 chr4 128751208 128751337 -55537325 - AluSg/x SINE Alu -15 295 165 348 267 61 64 chr4 128751372 128751747 -55536915 - L1M4 LINE L1 -2898 3248 2875 472 308 5 0 chr4 128751894 128752079 -55536583 - L1M4 LINE L1 -3321 2825 2640 21 0 0 0 chr4 128752210 128752231 -55536431 + AT_rich Low_complexity Low_complexity 1 21 0 2135 208 83 52 chr4 128752596 128753127 -55535535 + MLT2F LTR ERVL 3 555 -108 1976 115 7 46 chr4 128753127 128753432 -55535230 + AluSq SINE Alu 7 299 -14 2135 208 83 52 chr4 128753432 128753477 -55535185 + MLT2F LTR ERVL 555 597 -66 406 103 26 0 chr4 128753477 128753555 -55535107 + (TCTA)n Simple_repeat Simple_repeat 4 83 0 509 111 0 12 chr4 128753578 128753659 -55535003 + MADE1 DNA Mariner 1 80 0 8914 213 19 5 chr4 128753659 128754192 -55534470 - L1 LINE L1 -1204 4942 4418 234 0 0 0 chr4 128754192 128754218 -55534444 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 8914 213 19 5 chr4 128754218 128755889 -55532773 - L1 LINE L1 -1728 4418 2703 211 118 13 53 chr4 128755993 128756069 -55532593 + (TTTTTG)n Simple_repeat Simple_repeat 3 75 0 255 244 30 23 chr4 128756076 128756207 -55532455 + T-rich Low_complexity Low_complexity 3 134 0 395 197 40 13 chr4 128758041 128758117 -55530545 + MLT1I LTR MaLR 79 156 -253 286 259 30 74 chr4 128758214 128758349 -55530313 - MLT1I LTR MaLR -142 267 139 22 70 0 0 chr4 128758593 128758636 -55530026 + AT_rich Low_complexity Low_complexity 1 43 0 1553 154 94 7 chr4 128759012 128759298 -55529364 + AluSx SINE Alu 1 311 -1 438 238 99 0 chr4 128759447 128759571 -55529091 + MIR SINE MIR 37 172 -62 958 184 60 35 chr4 128760223 128760424 -55528238 - MER63A DNA MER1_type -1 209 4 629 256 49 0 chr4 128761061 128761225 -55527437 - MIR SINE MIR -59 203 32 251 291 0 0 chr4 128761786 128761841 -55526821 + L2 LINE L2 3241 3295 -18 323 286 109 25 chr4 128761913 128762032 -55526630 + L2 LINE L2 3144 3272 0 262 241 69 11 chr4 128763076 128763163 -55525499 + MER5C DNA MER1_type 25 116 -208 766 216 46 83 chr4 128763176 128763394 -55525268 - MER63A DNA MER1_type 0 210 1 183 295 27 107 chr4 128763459 128763522 -55525140 + L3 LINE CR1 1429 1495 -82 240 222 0 19 chr4 128763522 128763576 -55525086 + MER5C DNA MER1_type 272 324 0 183 295 27 107 chr4 128763576 128763608 -55525054 + L3 LINE CR1 1495 1565 -12 1792 154 52 55 chr4 128763775 128764159 -55524503 - MLT1B LTR MaLR 0 390 8 695 290 59 13 chr4 128764214 128764452 -55524210 + MIR SINE MIR 3 251 -11 504 254 18 55 chr4 128765870 128765952 -55522710 + MIR SINE MIR 30 105 -157 3135 145 94 6 chr4 128765952 128766420 -55522242 + MLT2B3 LTR ERVL 1 519 -35 408 88 0 0 chr4 128766420 128766477 -55522185 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 3135 145 94 6 chr4 128766477 128766517 -55522145 + MLT2B3 LTR ERVL 519 554 0 504 254 18 55 chr4 128766517 128766599 -55522063 + MIR SINE MIR 105 188 -74 2167 99 0 40 chr4 128766737 128767040 -55521622 + AluSc SINE Alu 1 291 -18 387 246 105 77 chr4 128768581 128768829 -55519833 - MIR SINE MIR 0 262 8 182 336 89 20 chr4 128768829 128768975 -55519687 + L2 LINE L2 2726 2881 -433 190 304 25 25 chr4 128770527 128770606 -55518056 - MIR SINE MIR -1 261 183 802 236 24 0 chr4 128770632 128770797 -55517865 - MIR SINE MIR -64 198 30 983 256 44 14 chr4 128771308 128771601 -55517061 - MER46C DNA MER2_type -34 304 3 745 244 30 49 chr4 128772638 128772684 -55515978 - MIR SINE MIR 0 262 217 2156 122 3 10 chr4 128772684 128772987 -55515675 - AluSx SINE Alu -11 301 1 745 244 30 49 chr4 128772987 128773206 -55515456 - MIR SINE MIR -45 217 2 739 33 0 0 chr4 128773291 128773381 -55515281 + AluSp/q SINE Alu 218 307 -6 199 259 161 54 chr4 128774217 128774329 -55514333 + L3 LINE CR1 516 639 -938 1755 164 3 20 chr4 128774349 128774647 -55514015 + AluJo SINE Alu 6 298 -14 300 303 41 87 chr4 128775069 128775521 -55513141 - L2 LINE L2 -194 3078 2599 2394 69 7 0 chr4 128775822 128776113 -55512549 + AluY SINE Alu 1 293 -18 2475 53 3 7 chr4 128776922 128777222 -55511440 + AluY SINE Alu 1 299 -12 255 330 54 44 chr4 128777399 128777602 -55511060 - L2 LINE L2 -1779 1535 1331 202 378 0 0 chr4 128777604 128777678 -55510984 - L2 LINE L2 -2182 1132 1059 543 295 129 54 chr4 128779259 128779494 -55509168 - L2 LINE L2 0 3272 3056 918 171 32 65 chr4 128779494 128779567 -55509095 - MER3 DNA MER1_type 0 209 135 2190 78 48 0 chr4 128779567 128779860 -55508802 + AluSg SINE Alu 1 307 -3 239 0 32 0 chr4 128779869 128779900 -55508762 + (CAA)n Simple_repeat Simple_repeat 3 34 0 918 171 32 65 chr4 128779900 128780032 -55508630 - MER3 DNA MER1_type -82 127 1 543 295 129 54 chr4 128780032 128780128 -55508534 - L2 LINE L2 -216 3056 2916 2286 96 0 3 chr4 128780323 128780625 -55508037 + AluSg SINE Alu 2 302 -8 1578 150 0 0 chr4 128780800 128781040 -55507622 + L1MA9 LINE L1 5554 5793 -519 1702 241 42 25 chr4 128781209 128781681 -55506981 + L1MA9 LINE L1 5795 6274 -38 673 248 109 51 chr4 128781952 128782177 -55506485 + MLT1G1 LTR MaLR 305 550 -45 4691 127 33 8 chr4 128782177 128782895 -55505767 - L1MA7 LINE L1 -6 6285 5550 673 248 109 51 chr4 128782895 128782943 -55505719 + MLT1G1 LTR MaLR 550 594 -1 319 244 33 0 chr4 128782944 128783034 -55505628 + L2 LINE L2 2013 2105 -1209 508 198 10 83 chr4 128783035 128783227 -55505435 - L1MC5 LINE L1 -29 7932 7755 325 217 96 0 chr4 128783228 128783311 -55505351 + L2 LINE L2 2153 2243 -1071 941 239 9 22 chr4 128783326 128783556 -55505106 + MIR SINE MIR 5 231 -31 1254 213 109 30 chr4 128783577 128783971 -55504691 + L2 LINE L2 2240 2664 -650 602 110 12 0 chr4 128783998 128784080 -55504582 - AluJ/FLAM SINE Alu -228 84 2 953 238 134 60 chr4 128784084 128784679 -55503983 + L2 LINE L2 2665 3295 -18 397 324 112 28 chr4 128784695 128784945 -55503717 - L2 LINE L2 -607 2707 2437 829 278 112 39 chr4 128785279 128785715 -55502947 + MLT1J LTR MaLR 11 478 -33 427 226 206 44 chr4 128786032 128786328 -55502334 - L1MEd LINE L1 -5226 893 550 377 328 130 41 chr4 128786342 128786757 -55501905 - L1MEd LINE L1 -5603 516 65 216 288 25 25 chr4 128786910 128786990 -55501672 + L2 LINE L2 3221 3300 -13 255 93 0 0 chr4 128786990 128787033 -55501629 + (ACTG)n Simple_repeat Simple_repeat 4 46 0 563 260 105 41 chr4 128787771 128787990 -55500672 + MIR SINE MIR 30 262 0 180 318 0 0 chr4 128788686 128788730 -55499932 - MIR SINE MIR -171 91 48 7265 196 18 11 chr4 128789391 128791016 -55497646 + L1PA15 LINE L1 3863 5501 -664 2474 88 0 0 chr4 128791016 128791324 -55497338 + AluY SINE Alu 1 308 -3 7265 196 18 11 chr4 128791324 128791994 -55496668 + L1PA15 LINE L1 5501 6165 0 743 105 0 0 chr4 128793618 128793713 -55494949 - AluSx SINE Alu -13 297 203 1123 122 0 0 chr4 128793713 128793861 -55494801 - AluSx SINE Alu -165 148 1 294 313 50 20 chr4 128793991 128794090 -55494572 + L2 LINE L2 3203 3304 -9 294 195 218 35 chr4 128795535 128795622 -55493040 - MIR SINE MIR -67 141 39 628 267 79 0 chr4 128795644 128795846 -55492816 + MIR SINE MIR 21 238 -24 429 20 0 0 chr4 128796773 128796823 -55491839 + (CA)n Simple_repeat Simple_repeat 2 51 0 512 199 32 39 chr4 128797033 128797189 -55491473 + L1ME4a LINE L1 5967 6121 0 6544 163 22 20 chr4 128797983 128799520 -55489142 + L1PA15 LINE L1 3952 5498 -667 2474 88 0 0 chr4 128799520 128799828 -55488834 + AluY SINE Alu 1 308 -3 6544 163 22 20 chr4 128799828 128800498 -55488164 + L1PA15 LINE L1 5498 6165 0 743 105 0 0 chr4 128802122 128802217 -55486445 - AluSx SINE Alu -13 297 203 1136 115 0 0 chr4 128802217 128802365 -55486297 - AluSx SINE Alu -164 148 1 673 253 54 34 chr4 128803338 128803634 -55485028 - L1M4 LINE L1 -3549 2597 2296 630 251 83 31 chr4 128805806 128806029 -55482633 - MIR SINE MIR 0 262 20 181 375 14 0 chr4 128807087 128807159 -55481503 + MIR SINE MIR 31 103 -105 237 236 167 0 chr4 128807386 128807458 -55481204 - MIR SINE MIR -70 138 55 211 146 18 55 chr4 128807700 128807755 -55480907 + CT-rich Low_complexity Low_complexity 4 56 0 2858 102 65 5 chr4 128807852 128808254 -55480408 + MSTA LTR MaLR 3 428 0 1851 215 127 23 chr4 128809759 128810280 -55478382 - MER21B LTR ERV1 -39 824 250 9305 151 16 12 chr4 128810291 128812197 -55476465 - L1MA5 LINE L1 -7 6293 4371 2038 134 50 34 chr4 128812197 128812555 -55476107 - THE1B LTR MaLR 0 364 1 9305 151 16 12 chr4 128812555 128813379 -55475283 - L1MA5 LINE L1 -1929 4371 3552 4178 230 45 6 chr4 128813377 128814248 -55474414 + L1M2c LINE L1 1 905 -5884 * 4537 126 78 1 chr4 128814249 128814961 -55473701 + LTR1B LTR ERV1 1 752 -74 4425 206 52 32 chr4 128815860 128816981 -55471681 - L1MC4a LINE L1 0 7808 6666 243 62 0 42 chr4 128817420 128817468 -55471194 - LTR1B LTR ERV1 -780 46 1 4435 233 84 42 chr4 128817470 128817929 -55470733 - L1MC4a LINE L1 -892 5254 4816 261 0 0 0 chr4 128817929 128817958 -55470704 + (TG)n Simple_repeat Simple_repeat 1 29 0 4435 233 84 42 chr4 128817958 128819117 -55469545 - L1MC4a LINE L1 -1330 4816 3707 1931 150 0 0 chr4 128819117 128819403 -55469259 + AluSx SINE Alu 1 286 -26 248 0 31 0 chr4 128819406 128819438 -55469224 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 4435 233 84 42 chr4 128819438 128819845 -55468817 - L1MC4a LINE L1 -1267 4879 4491 1095 278 116 50 chr4 128819864 128821184 -55467478 - L1MEd LINE L1 -1443 4686 3280 885 108 16 0 chr4 128821196 128821325 -55467337 - AluSg/x SINE Alu -15 297 167 485 236 34 173 chr4 128821360 128822067 -55466595 - L1MEd LINE L1 -2898 3231 2623 21 0 0 0 chr4 128822198 128822219 -55466443 + AT_rich Low_complexity Low_complexity 1 21 0 2362 206 83 52 chr4 128822584 128823115 -55465547 + MLT2F LTR ERVL 3 555 -108 1964 115 7 46 chr4 128823115 128823420 -55465242 + AluSq SINE Alu 7 299 -14 2362 206 83 52 chr4 128823420 128823465 -55465197 + MLT2F LTR ERVL 555 597 -66 406 103 26 0 chr4 128823465 128823543 -55465119 + (TCTA)n Simple_repeat Simple_repeat 4 83 0 1815 253 67 27 chr4 128823763 128824288 -55464374 + MLT1H1 LTR MaLR 3 548 -7 486 98 0 0 chr4 128824295 128824377 -55464285 + (TA)n Simple_repeat Simple_repeat 1 82 0 2285 58 45 3 chr4 128824899 128825191 -55463471 - AluY SINE Alu -7 304 1 561 246 36 16 chr4 128825310 128825458 -55463204 + LTR33A LTR ERVL 1 164 -357 552 277 194 4 chr4 128825489 128825742 -55462920 + LTR33A LTR ERVL 221 521 -2 230 216 20 0 chr4 128825742 128825793 -55462869 + (TTA)n Simple_repeat Simple_repeat 3 54 0 254 262 24 79 chr4 128826495 128826573 -55462089 - L1MEd LINE L1 -4711 1599 1529 1681 182 104 22 chr4 128826573 128826930 -55461732 + MLT1B LTR MaLR 5 390 0 254 262 24 79 chr4 128826930 128826977 -55461685 - L1MEd LINE L1 -4781 1529 1481 838 262 57 28 chr4 128826996 128827379 -55461283 - L1MEd LINE L1 -4862 1257 929 417 313 14 53 chr4 128827361 128827569 -55461093 - L1MEd LINE L1 -5697 422 223 * 2146 93 0 77 chr4 128827574 128827885 -55460777 + AluSg SINE Alu 1 287 -23 443 243 71 24 chr4 128827960 128828129 -55460533 - L1MEd LINE L1 -5940 179 3 23 0 0 0 chr4 128829438 128829461 -55459201 + AT_rich Low_complexity Low_complexity 1 23 0 569 231 60 60 chr4 128829722 128829904 -55458758 - MIR SINE MIR -2 260 79 190 186 0 23 chr4 128830028 128830071 -55458591 + MIR3 SINE MIR 160 201 -7 186 43 0 0 chr4 128830941 128830964 -55457698 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 428 263 117 113 chr4 128831602 128831661 -55457001 - MLT1H LTR MaLR -18 531 474 1413 203 80 34 chr4 128831661 128831987 -55456675 - MER58B DNA MER1_type 0 341 1 428 263 117 113 chr4 128831987 128832407 -55456255 - MLT1H LTR MaLR -75 474 50 920 193 0 12 chr4 128832462 128832643 -55456019 - AluJb SINE Alu 0 301 123 1200 202 16 23 chr4 128832646 128832904 -55455758 - AluJo SINE Alu -16 296 41 235 242 16 16 chr4 128833602 128833664 -55454998 + CT-rich Low_complexity Low_complexity 3 64 0 21 36 0 0 chr4 128834006 128834034 -55454628 + AT_rich Low_complexity Low_complexity 1 28 0 807 302 179 26 chr4 128834556 128835354 -55453308 + L2 LINE L2 2174 3144 -169 2307 98 13 0 chr4 128835354 128835659 -55453003 - AluSx SINE Alu -2 310 2 807 302 179 26 chr4 128835659 128835859 -55452803 + L2 LINE L2 3144 3312 -1 421 292 9 9 chr4 128836044 128836157 -55452505 - L2 LINE L2 -9 3304 3192 2624 120 52 39 chr4 128836378 128836820 -55451842 + L1PA16 LINE L1 5718 6165 -1 2335 101 3 3 chr4 128837580 128837886 -55450776 + AluSx SINE Alu 2 307 -5 881 237 135 29 chr4 128839210 128839494 -55449168 - L1ME LINE L1 -408 5762 5441 2290 168 9 0 chr4 128839494 128839839 -55448823 + MER7A DNA MER2_type 1 346 0 881 237 135 29 chr4 128839839 128839866 -55448796 - L1ME LINE L1 -729 5441 5418 * 1488 224 43 30 chr4 128839860 128840258 -55448404 + L1ME3A LINE L1 5759 6161 -9 289 316 98 15 chr4 128840262 128840395 -55448267 - MER5A DNA MER1_type -45 144 1 404 272 138 63 chr4 128841715 128841954 -55446708 - L2 LINE L2 -6 3266 3010 2094 146 30 9 chr4 128841963 128842298 -55446364 - L1PB4 LINE L1 -1 6155 5814 34238 98 9 54 chr4 128842322 128848764 -55439898 - L1PA7 LINE L1 -2 6152 12 1151 118 9 75 chr4 128848753 128849036 -55439626 - L1PA16 LINE L1 -313 5853 5612 * 2329 224 79 18 chr4 128849740 128850556 -55438106 - Charlie7 DNA MER1_type -58 2554 1642 303 283 47 68 chr4 128850603 128850794 -55437868 - L2 LINE L2 -814 2500 2314 201 353 29 52 chr4 128850801 128850937 -55437725 + L2 LINE L2 2329 2461 -853 4130 135 63 77 chr4 128850941 128851736 -55436926 - LTR1 LTR ERV1 0 785 2 766 257 105 44 chr4 128851831 128852173 -55436489 - L2 LINE L2 0 3313 2951 1699 175 55 34 chr4 128852568 128852950 -55435712 - MLT1D LTR MaLR -2 503 114 408 175 0 0 chr4 128853064 128853127 -55435535 - MLT1D LTR MaLR -442 63 1 229 267 10 50 chr4 128853728 128853829 -55434833 + Cheshire DNA MER1_type 2047 2143 -277 244 307 57 75 chr4 128854194 128854406 -55434256 - MIR SINE MIR 0 262 55 807 298 99 34 chr4 128854660 128854819 -55433843 + L2 LINE L2 2392 2539 -775 2036 186 31 3 chr4 128854819 128855174 -55433488 - MLT1A1 LTR MaLR 0 365 1 807 298 99 34 chr4 128855174 128855490 -55433172 + L2 LINE L2 2539 2898 -416 380 291 183 26 chr4 128855493 128855761 -55432901 + L2 LINE L2 3000 3309 -4 273 57 0 0 chr4 128857624 128857659 -55431003 + (CA)n Simple_repeat Simple_repeat 2 36 0 232 252 58 58 chr4 128857675 128857778 -55430884 - L1ME3A LINE L1 -105 6065 5963 25 51 0 0 chr4 128857817 128857856 -55430806 + AT_rich Low_complexity Low_complexity 1 39 0 1626 147 49 25 chr4 128857869 128858154 -55430508 + AluJo SINE Alu 1 292 -20 954 284 87 19 chr4 128858166 128858996 -55429666 - L1ME3A LINE L1 -231 5939 5045 1857 119 8 0 chr4 128859451 128859712 -55428950 - AluSx SINE Alu -15 297 35 2373 96 0 0 chr4 128860113 128860414 -55428248 + AluSq SINE Alu 13 313 0 236 338 122 14 chr4 128860629 128860777 -55427885 - MIR SINE MIR -95 167 4 21 0 0 0 chr4 128861152 128861173 -55427489 + AT_rich Low_complexity Low_complexity 1 21 0 241 350 57 14 chr4 128862202 128862342 -55426320 + L2 LINE L2 2948 3093 -179 473 280 104 26 chr4 128862707 128862900 -55425762 - MIR SINE MIR -24 238 31 22 0 0 0 chr4 128863246 128863268 -55425394 + AT_rich Low_complexity Low_complexity 1 22 0 505 203 196 7 chr4 128863334 128863477 -55425185 + MER97b DNA MER1_type? 15 184 -869 2327 164 93 30 chr4 128863696 128864167 -55424495 - MLT1D LTR MaLR 0 505 5 262 317 58 10 chr4 128864179 128864283 -55424379 + MIR SINE MIR 23 131 -77 486 33 0 0 chr4 128865448 128865508 -55423154 + (TC)n Simple_repeat Simple_repeat 2 61 0 411 73 0 0 chr4 128866942 128866997 -55421665 + (TG)n Simple_repeat Simple_repeat 2 56 0 430 307 93 0 chr4 128867817 128867957 -55420705 + MIR3 SINE MIR 37 189 -19 21 0 0 0 chr4 128869102 128869123 -55419539 + AT_rich Low_complexity Low_complexity 1 21 0 1644 176 32 0 chr4 128869697 128869976 -55418686 - AluJo SINE Alu -19 293 6 2104 131 0 10 chr4 128870550 128870855 -55417807 + AluSx SINE Alu 1 302 -10 282 395 22 0 chr4 128872006 128872140 -55416522 - MIR3 SINE MIR -16 192 56 1644 134 23 53 chr4 128872401 128872700 -55415962 + AluJo SINE Alu 1 290 -22 180 0 0 0 chr4 128873233 128873253 -55415409 + (A)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr4 128874127 128874148 -55414514 + AT_rich Low_complexity Low_complexity 1 21 0 266 0 29 0 chr4 128875253 128875287 -55413375 + (TTTG)n Simple_repeat Simple_repeat 4 38 0 2132 112 0 0 chr4 128875287 128875565 -55413097 - AluSg SINE Alu -32 278 1 269 292 54 39 chr4 128875759 128875889 -55412773 + LTR67 LTR ERVL 426 557 0 2357 94 7 0 chr4 128875902 128876199 -55412463 - AluSc SINE Alu -10 299 1 296 306 62 38 chr4 128876306 128876466 -55412196 - LTR67 LTR ERVL -7 550 387 2354 193 51 16 chr4 128877537 128877987 -55410675 + MER31B LTR ERV1 1 466 0 863 251 49 4 chr4 128879223 128879470 -55409192 + MIR SINE MIR 1 258 -4 298 330 121 59 chr4 128880257 128880320 -55408342 - MIR SINE MIR -6 256 198 1457 228 142 33 chr4 128880320 128880772 -55407890 - MLT1D LTR MaLR 0 505 5 298 330 121 59 chr4 128880772 128880947 -55407715 - MIR SINE MIR -64 198 3 336 271 133 18 chr4 128880995 128881161 -55407501 - MIR SINE MIR -29 233 49 199 234 26 78 chr4 128881542 128881619 -55407043 - MIR SINE MIR -71 191 119 366 115 0 0 chr4 128881805 128881866 -55406796 + (TC)n Simple_repeat Simple_repeat 2 62 0 342 0 0 0 chr4 128881866 128881904 -55406758 + (CA)n Simple_repeat Simple_repeat 1 38 0 351 0 0 0 chr4 128882596 128882635 -55406027 + (CA)n Simple_repeat Simple_repeat 1 39 0 293 329 39 117 chr4 128883385 128883820 -55404842 + L2 LINE L2 2871 3271 -1 1887 176 0 0 chr4 128883824 128884126 -55404536 + AluJb SINE Alu 1 302 -10 189 0 0 0 chr4 128884169 128884190 -55404472 + (TTAAA)n Simple_repeat Simple_repeat 4 24 0 27 49 0 0 chr4 128884549 128884590 -55404072 + AT_rich Low_complexity Low_complexity 1 41 0 458 218 100 24 chr4 128886680 128886868 -55401794 - MIR SINE MIR -51 211 9 2222 100 3 0 chr4 128887643 128887934 -55400728 - AluSp SINE Alu -21 292 1 2493 61 0 3 chr4 128888471 128888781 -55399881 + AluY SINE Alu 1 309 -2 28 71 0 0 chr4 128888826 128888882 -55399780 + AT_rich Low_complexity Low_complexity 1 56 0 752 210 64 58 chr4 128888902 128889334 -55399328 - MER34 LTR ERV1 -115 627 1 1268 236 10 80 chr4 128889414 128889743 -55398919 - MLT1A2 LTR MaLR 0 374 76 1353 98 85 58 chr4 128889743 128889874 -55398788 + MER30 DNA MER1_type 1 142 -88 2097 141 0 0 chr4 128889874 128890179 -55398483 - AluSx SINE Alu -2 310 6 1353 98 85 58 chr4 128890179 128890271 -55398391 + MER30 DNA MER1_type 142 230 0 1268 236 10 80 chr4 128890271 128890343 -55398319 - MLT1A2 LTR MaLR -298 76 1 335 289 92 0 chr4 128892295 128892447 -55396215 - L1P5 LINE L1 -338 5813 5652 2461 68 10 0 chr4 128892520 128892816 -55395846 - AluSp SINE Alu -14 299 1 21 0 0 0 chr4 128892864 128892885 -55395777 + AT_rich Low_complexity Low_complexity 1 21 0 556 280 185 17 chr4 128893019 128893594 -55395068 - L1ME3A LINE L1 -221 5949 5286 295 141 94 0 chr4 128893612 128893676 -55394986 - MER116 DNA Mariner 0 80 11 302 335 35 5 chr4 128893690 128893890 -55394772 - L1ME3A LINE L1 -880 5266 5061 357 273 68 34 chr4 128894022 128894227 -55394435 - L1MC/D LINE L1 -735 5429 5255 1757 169 0 31 chr4 128894370 128894689 -55393973 - AluJb SINE Alu -1 311 3 2222 112 0 0 chr4 128895447 128895742 -55392920 - AluSx SINE Alu -17 295 1 436 313 120 0 chr4 128896424 128896574 -55392088 + MIR3 SINE MIR 30 197 -11 2303 77 0 74 chr4 128897642 128897980 -55390682 + AluSp SINE Alu 1 313 0 1447 139 14 59 chr4 128898020 128898345 -55390317 + AluJo SINE Alu 17 312 0 255 294 120 11 chr4 128899777 128899869 -55388793 + L2 LINE L2 3212 3313 0 1994 162 49 8 chr4 128900767 128901132 -55387530 - L1MA9 LINE L1 -30 6282 5903 642 184 47 133 chr4 128901581 128901836 -55386826 + L2 LINE L2 3077 3309 -4 970 243 44 4 chr4 128902439 128902690 -55385972 - MIR SINE MIR 0 262 2 214 318 0 34 chr4 128903744 128903832 -55384830 + CT-rich Low_complexity Low_complexity 5 89 0 313 236 43 79 chr4 128904536 128904676 -55383986 - MER112 DNA MER1_type -46 214 80 769 265 85 41 chr4 128904739 128905056 -55383606 + MLT1J2 LTR MaLR 67 397 -53 241 304 0 38 chr4 128905109 128905188 -55383474 - MER112 DNA MER1_type -179 81 6 617 263 38 27 chr4 128905200 128905386 -55383276 + MER5A DNA MER1_type 1 188 -1 296 357 105 31 chr4 128905573 128905859 -55382803 + L2 LINE L2 207 513 -2801 1096 243 118 31 chr4 128905868 128906124 -55382538 - MLT1L LTR MaLR 0 615 314 2035 204 83 31 chr4 128906124 128906385 -55382277 - MLT1D LTR MaLR 0 505 259 423 0 0 0 chr4 128906385 128906432 -55382230 + (TG)n Simple_repeat Simple_repeat 2 48 0 2035 204 83 31 chr4 128906432 128906650 -55382012 - MLT1D LTR MaLR -246 259 1 1096 243 118 31 chr4 128906650 128906776 -55381886 - MLT1L LTR MaLR -301 314 200 223 308 297 8 chr4 128906864 128907345 -55381317 + L2 LINE L2 523 1142 -2172 261 310 64 41 chr4 128907369 128907540 -55381122 + L2 LINE L2 1361 1535 -1779 2475 53 3 7 chr4 128907717 128908017 -55380645 - AluY SINE Alu -12 299 1 2188 102 0 23 chr4 128908022 128908327 -55380335 - AluSq SINE Alu -15 298 1 253 352 95 33 chr4 128908748 128908958 -55379704 + L2 LINE L2 2827 3049 -223 204 40 0 0 chr4 128909298 128909323 -55379339 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 310 254 154 9 chr4 128910227 128910337 -55378325 + L2 LINE L2 3183 3308 -5 523 234 150 36 chr4 128910424 128910591 -55378071 + MIR SINE MIR 56 241 -21 200 318 68 11 chr4 128911898 128911986 -55376676 + L2 LINE L2 3142 3234 -38 226 220 0 34 chr4 128915748 128915807 -55372855 + L1MC4 LINE L1 6646 6702 -1340 1861 131 38 21 chr4 128915890 128916180 -55372482 + AluSx SINE Alu 1 295 -17 238 150 0 0 chr4 128916405 128916445 -55372217 - L2 LINE L2 0 3313 3274 586 191 11 0 chr4 128916467 128916561 -55372101 + AluJ/FLAM SINE Alu 3 97 -215 951 173 0 0 chr4 128916561 128916711 -55371951 + AluJo/FRAM SINE Alu 143 292 -20 543 295 129 54 chr4 128919014 128919249 -55369413 - L2 LINE L2 0 3272 3003 979 164 62 58 chr4 128919249 128919322 -55369340 - MER3 DNA MER1_type 0 209 138 2185 74 47 7 chr4 128919322 128919655 -55369007 + AluSg SINE Alu 1 345 0 979 164 62 58 chr4 128919655 128919787 -55368875 - MER3 DNA MER1_type -71 138 1 543 295 129 54 chr4 128919787 128919883 -55368779 - L2 LINE L2 -269 3003 2916 1072 295 121 38 chr4 128919913 128920078 -55368584 - L2 LINE L2 -2282 1032 882 2171 107 0 3 chr4 128920078 128920378 -55368284 + AluSg SINE Alu 2 300 -10 1072 295 121 38 chr4 128920378 128920954 -55367708 - L2 LINE L2 -2432 882 229 251 326 12 12 chr4 128921896 128921982 -55366680 - MIR3 SINE MIR -23 185 100 2076 154 0 0 chr4 128922039 128922351 -55366311 + AluJb SINE Alu 1 312 0 333 298 214 20 chr4 128922477 128922725 -55365937 - L3 LINE CR1 -88 1489 1194 1678 205 0 3 chr4 128922966 128923264 -55365398 + AluJo SINE Alu 5 301 -11 2323 82 7 10 chr4 128923292 128923597 -55365065 + AluSq SINE Alu 1 304 -9 21 57 0 0 chr4 128924074 128924109 -55364553 + AT_rich Low_complexity Low_complexity 1 35 0 3198 90 32 11 chr4 128924134 128924569 -55364093 + MLT2A1 LTR ERVL 1 444 0 191 352 14 42 chr4 128925047 128925118 -55363544 - L2 LINE L2 -19 3253 3185 2259 106 0 0 chr4 128925230 128925512 -55363150 + AluSc SINE Alu 1 282 -27 2121 127 0 0 chr4 128925542 128925841 -55362821 + AluSx SINE Alu 10 308 -4 232 332 134 14 chr4 128926077 128926300 -55362362 - L2 LINE L2 -219 3053 2804 944 216 35 148 chr4 128926367 128926914 -55361748 - L1MC4 LINE L1 -1 8041 7557 2223 260 2 0 chr4 128927028 128927490 -55361172 + L1M1 LINE L1 2 464 -6385 1123 309 60 0 chr4 128927510 128927860 -55360802 + L1M1 LINE L1 624 994 -5855 11781 180 30 36 chr4 128927895 128928816 -55359846 + L1M1 LINE L1 2826 3751 -3097 1744 171 3 20 chr4 128928816 128929121 -55359541 + AluJo SINE Alu 1 300 -12 1945 146 17 3 chr4 128929128 128929423 -55359239 + AluSx SINE Alu 4 302 -10 11781 180 30 36 chr4 128929423 128929559 -55359103 + L1M1 LINE L1 3757 3892 -2956 2184 79 22 0 chr4 128929559 128929861 -55358801 + AluY SINE Alu 1 308 0 2372 73 0 7 chr4 128929861 128930163 -55358499 + AluY SINE Alu 1 300 -11 11781 180 30 36 chr4 128930163 128930982 -55357680 + L1M1 LINE L1 3891 4694 -2154 2196 81 0 72 chr4 128930982 128931302 -55357360 + AluSc SINE Alu 12 308 -1 11781 180 30 36 chr4 128931302 128932018 -55356644 + L1M1 LINE L1 4694 5413 -1435 2252 111 7 0 chr4 128932018 128932315 -55356347 + AluSg SINE Alu 1 299 -11 3092 118 2 0 chr4 128932315 128932764 -55355898 + L1M1 LINE L1 6024 6473 -532 1921 66 16 6 chr4 128932772 128933027 -55355635 + LTR12 LTR ERV1 57 284 -430 240 247 14 14 chr4 128933028 128933101 -55355561 + LTR30 LTR ERV1 552 624 -98 2899 138 32 49 chr4 128933129 128933508 -55355154 + L1MA4A LINE L1 5770 6154 -149 2160 98 3 13 chr4 128933508 128933814 -55354848 - AluSx SINE Alu -9 303 1 2899 138 32 49 chr4 128933814 128933853 -55354809 + L1MA4A LINE L1 6154 6192 -111 1969 107 0 18 chr4 128933853 128934125 -55354537 + AluSx SINE Alu 39 305 -7 2899 138 32 49 chr4 128934125 128934240 -55354422 + L1MA4A LINE L1 6192 6295 -8 1711 187 3 0 chr4 128934248 128934537 -55354125 + AluJo SINE Alu 1 290 -22 31 0 0 0 chr4 128934540 128934571 -55354091 + AT_rich Low_complexity Low_complexity 1 31 0 210 333 40 32 chr4 128934593 128934719 -55353943 - L2 LINE L2 -570 2744 2618 2149 108 0 7 chr4 128934882 128935214 -55353448 + AluSq SINE Alu 1 330 0 466 307 133 33 chr4 128935304 128935666 -55352996 + L1MEd LINE L1 316 713 -5659 1865 211 41 82 chr4 128935667 128936227 -55352435 - MLT2B3 LTR ERVL 0 554 18 837 283 88 77 chr4 128936231 128936730 -55351932 + L1MEd LINE L1 745 1237 -5135 1965 159 0 0 chr4 128936730 128937031 -55351631 + AluSx SINE Alu 1 301 -11 837 283 88 77 chr4 128937031 128937057 -55351605 + L1MEd LINE L1 1237 1261 -5111 2339 92 3 0 chr4 128937057 128937372 -55351290 + AluSq SINE Alu 1 316 0 979 114 7 0 chr4 128937376 128937525 -55351137 + L1MA6 LINE L1 6150 6299 -1 1948 163 7 0 chr4 128937528 128937835 -55350827 + AluJb SINE Alu 3 311 -1 837 283 88 77 chr4 128937835 128938055 -55350607 + L1MEd LINE L1 1264 1510 -4862 237 232 0 0 chr4 128938088 128938144 -55350518 + A-rich Low_complexity Low_complexity 4 59 0 348 304 27 0 chr4 128938174 128938286 -55350376 + HAL1 LINE L1 1517 1631 -876 1169 213 28 113 chr4 128938300 128938453 -55350209 + MLT1A1 LTR MaLR 1 165 -200 2075 97 7 10 chr4 128938453 128938774 -55349888 + AluSx SINE Alu 1 312 0 1169 213 28 113 chr4 128938774 128939019 -55349643 + MLT1A1 LTR MaLR 165 365 0 21 0 0 0 chr4 128939197 128939218 -55349444 + AT_rich Low_complexity Low_complexity 1 21 0 620 262 55 55 chr4 128939344 128939503 -55349159 + L1MEd LINE L1 2318 2476 -3906 2349 75 3 26 chr4 128939503 128939810 -55348852 + AluY SINE Alu 2 301 -10 620 262 55 55 chr4 128939810 128940070 -55348592 + L1MEd LINE L1 2476 2741 -3641 241 289 35 53 chr4 128940100 128940214 -55348448 - L2 LINE L2 -965 2349 2238 191 409 100 14 chr4 128940610 128940830 -55347832 - L2 LINE L2 -208 3064 2826 499 81 103 11 chr4 128941333 128941420 -55347242 + Alu SINE Alu 214 308 -2 1825 138 15 4 chr4 128941716 128941985 -55346677 + AluSx SINE Alu 34 305 -7 2306 108 0 0 chr4 128942384 128942681 -55345981 - AluSx SINE Alu -15 297 1 229 305 73 13 chr4 128942694 128942748 -55345914 - L1MC/D LINE L1 -431 5928 5875 608 231 93 14 chr4 128942748 128942964 -55345698 - L1ME3A LINE L1 -299 5871 5639 2019 100 3 85 chr4 128944069 128944400 -55344262 + AluSx SINE Alu 1 304 -8 2106 82 39 4 chr4 128945869 128946150 -55342512 - AluSc SINE Alu -16 293 3 365 291 133 18 chr4 128946461 128946626 -55342036 + MIR SINE MIR 47 230 -32 2342 84 0 0 chr4 128947067 128947379 -55341283 + AluSq SINE Alu 1 312 0 582 209 34 34 chr4 128949364 128949512 -55339150 + MIR SINE MIR 65 212 -50 2271 168 3 13 chr4 128950915 128951302 -55337360 + MLT1B LTR MaLR 1 383 -7 512 185 7 26 chr4 128952850 128952945 -55335717 + GA-rich Low_complexity Low_complexity 2 94 -55 2382 91 0 0 chr4 128952945 128953243 -55335419 + AluY SINE Alu 1 298 -13 512 185 7 26 chr4 128953243 128953298 -55335364 + GA-rich Low_complexity Low_complexity 94 149 0 2924 73 95 2 chr4 128953322 128953732 -55334930 - LTR7 LTR ERV1 -2 448 1 2406 102 48 5 chr4 128953732 128954106 -55334556 - HERVH LTR ERV1 0 7713 7324 1274 149 23 0 chr4 128954106 128954321 -55334341 - HERVH LTR ERV1 -1894 5819 5600 4532 139 0 1 chr4 128954322 128954985 -55333677 - HERVH LTR ERV1 -2564 5149 4488 3493 101 4 6 chr4 128954987 128955490 -55333172 - HERVH LTR ERV1 -3720 3993 3492 996 120 7 0 chr4 128955480 128955630 -55333032 - HERVH LTR ERV1 -4423 3290 3140 * 19652 99 21 28 chr4 128955609 128958626 -55330036 - HERVH LTR ERV1 -4718 2995 1 3172 54 98 5 chr4 128958628 128959038 -55329624 - LTR7 LTR ERV1 -2 448 1 1712 2 0 0 chr4 128959551 128959789 -55328873 - L1PA3 LINE L1 -697 5458 5221 6150 17 1 8 chr4 128959789 128960490 -55328172 + L1PA3 LINE L1 5459 6155 0 27 0 0 0 chr4 128960512 128960539 -55328123 + AT_rich Low_complexity Low_complexity 1 27 0 222 37 0 0 chr4 128960556 128960583 -55328079 + (A)n Simple_repeat Simple_repeat 1 27 0 2223 97 3 38 chr4 128961125 128961444 -55327218 + AluSx SINE Alu 1 308 -4 249 266 129 32 chr4 128961467 128961591 -55327071 - MIR SINE MIR -59 203 68 690 278 52 7 chr4 128962773 128963082 -55325580 + L1MC4 LINE L1 6997 7319 -723 647 135 0 19 chr4 128963088 128963250 -55325412 - AluJ SINE Alu 0 341 182 * 735 174 15 0 chr4 128963248 128963380 -55325282 - AluJ SINE Alu -177 135 2 1102 226 138 85 chr4 128963386 128963654 -55325008 + L1MC4 LINE L1 7327 7579 -463 1598 60 0 0 chr4 128963654 128963839 -55324823 + AluY SINE Alu 1 185 -126 1102 226 138 85 chr4 128963839 128964250 -55324412 + L1MC4 LINE L1 7579 8042 0 489 208 111 21 chr4 128964480 128964624 -55324038 - MER103 DNA DNA -7 159 3 1029 204 5 0 chr4 128964664 128964860 -55323802 + L1PB4 LINE L1 5946 6142 -14 1947 95 0 19 chr4 128964881 128965143 -55323519 - AluSq SINE Alu -56 257 1 22 0 0 0 chr4 128965143 128965165 -55323497 + AT_rich Low_complexity Low_complexity 1 22 0 287 253 115 11 chr4 128965210 128965297 -55323365 - MIR3 SINE MIR -31 177 82 1928 92 0 57 chr4 128965302 128965585 -55323077 - AluSg SINE Alu -43 267 1 4444 109 21 10 chr4 128966963 128967584 -55321078 - MER51A LTR ERV1 0 634 7 399 270 116 55 chr4 128967618 128967911 -55320751 + MLT1I LTR MaLR 73 383 -26 250 146 125 0 chr4 128967878 128967926 -55320736 + MLT1J2 LTR MaLR 397 450 0 * 204 158 0 0 chr4 128969125 128969163 -55319499 + (TAGA)n Simple_repeat Simple_repeat 2 39 0 417 304 166 13 chr4 128969857 128970170 -55318492 + L2 LINE L2 1962 2322 -992 222 305 68 17 chr4 128970291 128970409 -55318253 - L2 LINE L2 -27 3286 3163 217 62 42 42 chr4 128970717 128970765 -55317897 + (TG)n Simple_repeat Simple_repeat 2 49 0 346 183 43 9 chr4 128971124 128971239 -55317423 + GA-rich Low_complexity Low_complexity 1 119 0 1959 107 12 86 chr4 128971280 128971607 -55317055 + AluSx SINE Alu 1 303 -9 346 48 0 0 chr4 128971651 128971693 -55316969 + AluY SINE Alu 1 42 -261 698 74 0 0 chr4 128971694 128971789 -55316873 + AluSc SINE Alu 215 309 0 1933 154 3 22 chr4 128972291 128972602 -55316060 + AluJo SINE Alu 1 305 -7 337 264 110 44 chr4 128973258 128973440 -55315222 - MIR SINE MIR 0 262 69 1612 210 73 14 chr4 128974590 128974964 -55313698 - MLT1D LTR MaLR -23 470 113 428 94 0 0 chr4 128974971 128975035 -55313627 - Alu SINE Alu -8 304 241 830 146 24 0 chr4 128975045 128975168 -55313494 - AluJb SINE Alu -186 126 1 379 200 19 76 chr4 128975168 128975273 -55313389 - MLT1D LTR MaLR -419 86 1 786 260 141 58 chr4 128975491 128975902 -55312760 - MLT1H LTR MaLR -17 532 88 2369 109 0 0 chr4 128977338 128977641 -55311021 + AluSq SINE Alu 3 305 -8 213 196 0 0 chr4 128977648 128977699 -55310963 + A-rich Low_complexity Low_complexity 1 51 0 276 292 43 50 chr4 128978083 128978236 -55310426 + MIR3 SINE MIR 2 156 -52 1856 177 27 35 chr4 128978750 128979118 -55309544 - MLT1A1 LTR MaLR 0 365 1 2235 132 0 0 chr4 128979466 128979777 -55308885 + AluSx SINE Alu 1 311 -1 2088 108 0 7 chr4 128979794 128980121 -55308541 + AluY SINE Alu 1 325 0 320 302 44 77 chr4 128980223 128980471 -55308191 - MIR SINE MIR -3 259 20 279 0 0 0 chr4 128981753 128981784 -55306878 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1698 152 33 0 chr4 128981790 128982060 -55306602 - AluJo SINE Alu -32 280 2 2550 58 3 3 chr4 128982349 128982659 -55306003 - AluY SINE Alu -1 310 1 709 245 102 48 chr4 128982733 128983191 -55305471 - MLT1H LTR MaLR 0 549 1 219 227 0 0 chr4 128983945 128983989 -55304673 - L2 LINE L2 -10 3262 3219 1125 122 13 0 chr4 128984745 128984901 -55303761 + AluSg SINE Alu 1 158 -152 4534 119 117 116 chr4 128984906 128986282 -55302380 + pTR5 LTR ERV1 740 2438 0 890 141 0 7 chr4 128986284 128986424 -55302238 + AluSg SINE Alu 162 302 -10 266 71 0 24 chr4 128986424 128986466 -55302196 + (TA)n Simple_repeat Simple_repeat 1 41 0 2391 84 0 7 chr4 128986481 128986789 -55301873 - AluY SINE Alu -5 306 1 2317 74 0 3 chr4 128987049 128987361 -55301301 - AluSq SINE Alu 0 311 1 550 254 0 23 chr4 128988097 128988227 -55300435 + FLAM_C SINE Alu 1 127 -6 243 0 0 0 chr4 128988306 128988333 -55300329 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1677 161 79 0 chr4 128988344 128988509 -55300153 - AluJo SINE Alu -7 305 108 186 103 0 0 chr4 128988509 128988538 -55300124 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1677 161 79 0 chr4 128988538 128988651 -55300011 - AluJo SINE Alu -204 108 5 204 328 48 92 chr4 128988721 128988992 -55299670 - MIR SINE MIR 0 262 4 2420 90 3 0 chr4 128989738 128990038 -55298624 + AluSp SINE Alu 1 301 -12 1287 213 157 48 chr4 128990187 128990266 -55298396 + LTR48 LTR ERV1 1 70 -525 2463 63 3 10 chr4 128990266 128990568 -55298094 + AluY SINE Alu 2 301 -10 1287 213 157 48 chr4 128990568 128990966 -55297696 + LTR48 LTR ERV1 70 442 -153 2258 119 0 0 chr4 128990966 128991261 -55297401 + AluSx SINE Alu 1 295 -17 1287 213 157 48 chr4 128991261 128991434 -55297228 + LTR48 LTR ERV1 442 595 0 1507 162 0 0 chr4 128991871 128992112 -55296550 - AluSg SINE Alu -9 301 61 1399 163 58 32 chr4 128992175 128992452 -55296210 - AluJo SINE Alu -18 284 1 2113 99 28 7 chr4 128992756 128993038 -55295624 + AluSq SINE Alu 1 288 -25 222 37 0 0 chr4 128993042 128993069 -55295593 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2182 108 0 4 chr4 128993511 128993815 -55294847 + AluSc SINE Alu 1 303 0 1956 130 0 20 chr4 128993854 128994153 -55294509 - AluJb SINE Alu -18 294 2 1941 170 139 23 chr4 128994426 128994510 -55294152 - MER97c DNA MER1_type? -128 766 693 1957 103 6 61 chr4 128994510 128994822 -55293840 - AluSp SINE Alu 0 313 19 1941 170 139 23 chr4 128994822 128995496 -55293166 - MER97c DNA MER1_type? -201 693 1 22 56 0 0 chr4 128995554 128995590 -55293072 + AT_rich Low_complexity Low_complexity 1 36 0 254 162 14 40 chr4 128995786 128995860 -55292802 + MIR3 SINE MIR 135 206 -2 192 77 0 0 chr4 128996313 128996339 -55292323 + (TG)n Simple_repeat Simple_repeat 1 26 0 400 270 164 34 chr4 128996647 128996910 -55291752 - L1MC5 LINE L1 -26 7935 7639 2422 172 108 6 chr4 128996910 128997410 -55291252 + MER34C LTR ERV1 35 585 0 1530 183 7 20 chr4 128997460 128997755 -55290907 - AluJo SINE Alu -21 291 1 243 0 0 0 chr4 128997757 128997784 -55290878 + (T)n Simple_repeat Simple_repeat 1 27 0 484 214 19 0 chr4 128997798 128997901 -55290761 - L1MC5 LINE L1 -386 7575 7471 386 196 33 0 chr4 128998027 128998119 -55290543 - MIR SINE MIR -50 212 118 3127 154 10 19 chr4 128998121 128998265 -55290397 - MER50 LTR ERV1 -23 711 567 1487 113 198 12 chr4 128998265 128998512 -55290150 + AluSg1 SINE Alu 1 293 -16 3127 154 10 19 chr4 128998512 128998879 -55289783 - MER50 LTR ERV1 -167 567 205 3789 104 7 28 chr4 128998885 128999422 -55289240 - MER61E LTR ERV1 -43 526 1 644 93 0 0 chr4 128999422 128999508 -55289154 - MER50 LTR ERV1 -524 210 125 1229 99 19 0 chr4 128999508 128999669 -55288993 - AluSq SINE Alu -84 229 66 337 200 35 0 chr4 128999674 128999759 -55288903 - MIR SINE MIR -57 205 118 422 119 90 0 chr4 128999765 128999832 -55288830 - AluSq SINE Alu -239 74 2 832 85 47 39 chr4 128999834 128999963 -55288699 - MER50 LTR ERV1 -604 130 1 279 243 14 0 chr4 128999966 129000036 -55288626 - MIR SINE MIR -144 118 48 633 319 11 39 chr4 129000058 129000318 -55288344 - MIR SINE MIR -2 260 8 742 149 0 0 chr4 129000616 129000730 -55287932 + AluJb SINE Alu 4 117 -195 216 0 0 0 chr4 129000733 129000757 -55287905 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2453 89 0 6 chr4 129000759 129001073 -55287589 + AluSp SINE Alu 2 313 0 3129 154 16 68 chr4 129001247 129001864 -55286798 - MER34C LTR ERV1 0 585 1 1824 147 0 4 chr4 129002494 129002773 -55285889 + AluJb SINE Alu 35 312 0 1416 158 34 121 chr4 129002803 129003240 -55285422 - LTR37A LTR ERV1 -9 417 19 2027 183 70 32 chr4 129004032 129004474 -55284188 + LTR2B LTR ERV1 32 490 0 289 180 80 40 chr4 129004766 129004866 -55283796 + L1ME LINE L1 5542 5645 -476 829 176 79 32 chr4 129004884 129005073 -55283589 + L1MA9 LINE L1 4340 4543 -1603 2257 70 3 11 chr4 129005073 129005387 -55283275 - AluSp SINE Alu 0 313 2 829 176 79 32 chr4 129005387 129005412 -55283250 + L1MA9 LINE L1 4543 4565 -1581 1824 113 4 11 chr4 129005524 129005798 -55282864 + AluSc SINE Alu 27 298 -11 3837 162 34 12 chr4 129005798 129006445 -55282217 + MER72 LTR ERV1 62 722 0 5069 162 31 30 chr4 129006445 129008072 -55280590 + L1MA9 LINE L1 4562 6186 -126 1686 109 76 124 chr4 129008072 129008317 -55280345 - THE1C LTR MaLR 0 375 120 2310 94 3 0 chr4 129008317 129008603 -55280059 + AluSp SINE Alu 2 288 -25 207 0 0 0 chr4 129008606 129008629 -55280033 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1686 109 76 124 chr4 129008629 129008773 -55279889 - THE1C LTR MaLR -257 118 1 5069 162 31 30 chr4 129008773 129008843 -55279819 + L1MA9 LINE L1 6186 6274 -38 2424 67 7 3 chr4 129009048 129009345 -55279317 - AluY SINE Alu -13 298 1 840 212 57 50 chr4 129009346 129009379 -55279283 - L1MC5 LINE L1 -23 7938 7907 1934 123 60 0 chr4 129009379 129009663 -55278999 + AluSx SINE Alu 1 301 -11 840 212 57 50 chr4 129009663 129009912 -55278750 - L1MC5 LINE L1 -54 7907 7654 185 211 19 0 chr4 129009939 129009991 -55278671 + (TA)n Simple_repeat Simple_repeat 2 54 0 371 253 56 94 chr4 129009992 129010225 -55278437 - MER31-int LTR ERV1 -1435 3501 3278 333 175 33 17 chr4 129012197 129012317 -55276345 + (TA)n Simple_repeat Simple_repeat 1 122 0 2398 57 0 23 chr4 129013115 129013416 -55275246 - AluY SINE Alu -17 294 1 1517 105 48 40 chr4 129013431 129013659 -55275003 - MER30 DNA MER1_type 0 230 1 442 276 150 0 chr4 129013660 129013787 -55274875 + MER63A DNA MER1_type 60 205 -5 564 340 10 5 chr4 129014063 129014257 -55274405 - L3 LINE CR1 -142 1435 1241 435 195 69 0 chr4 129014261 129014348 -55274314 - MIR3 SINE MIR -35 173 81 325 129 65 0 chr4 129014459 129014521 -55274141 - Alu SINE Alu 0 302 237 2053 90 4 4 chr4 129014521 129014788 -55273874 - AluSx SINE Alu -45 267 1 236 393 29 0 chr4 129014789 129014929 -55273733 - L3 LINE CR1 -398 1179 1036 1131 219 50 83 chr4 129015032 129015516 -55273146 - LTR37B LTR ERV1 0 468 1 30 59 0 0 chr4 129015519 129015570 -55273092 + AT_rich Low_complexity Low_complexity 1 51 0 2348 89 3 0 chr4 129015578 129015881 -55272781 - AluSp SINE Alu -9 304 1 2311 117 0 0 chr4 129016027 129016335 -55272327 - AluSx SINE Alu -4 308 1 5739 92 3 53 chr4 129016345 129016950 -55271712 - L1PA13 LINE L1 0 6163 5529 1964 165 114 35 chr4 129016950 129017404 -55271258 + LTR2B LTR ERV1 1 490 0 5739 92 3 53 chr4 129017404 129017671 -55270991 - L1PA13 LINE L1 -634 5529 5250 2428 90 0 0 chr4 129017671 129017972 -55270690 - AluSg SINE Alu -9 301 1 2203 122 3 0 chr4 129017974 129018269 -55270393 - AluSx SINE Alu -16 296 1 5739 92 3 53 chr4 129018269 129018297 -55270365 - L1PA13 LINE L1 -831 5332 5304 407 264 109 47 chr4 129018407 129018461 -55270201 - L3 LINE CR1 -45 1532 1483 2190 105 7 7 chr4 129018461 129018755 -55269907 + AluSg SINE Alu 1 294 -16 407 264 109 47 chr4 129018755 129018893 -55269769 - L3 LINE CR1 -94 1483 1328 2488 57 3 0 chr4 129019387 129019686 -55268976 + AluY SINE Alu 1 300 -11 2045 79 39 7 chr4 129019686 129019964 -55268698 + AluSc SINE Alu 1 288 -21 575 126 19 29 chr4 129020231 129020334 -55268328 + MER3 DNA MER1_type 108 209 0 1646 183 87 33 chr4 129020402 129020768 -55267894 - MLT1B LTR MaLR -2 388 3 2281 87 3 13 chr4 129020788 129021097 -55267565 - AluY SINE Alu -5 306 1 872 139 0 29 chr4 129021126 129021263 -55267399 + FLAM_C SINE Alu 1 133 0 1957 132 108 72 chr4 129022441 129022859 -55265803 - Tigger2a DNA MER2_type 0 434 2 800 99 0 151 chr4 129023000 129023152 -55265510 - AluSg/x SINE Alu -13 297 169 2075 97 8 0 chr4 129023907 129024175 -55264487 + AluSx SINE Alu 26 295 -17 773 323 65 14 chr4 129024346 129024625 -55264037 - L3 LINE CR1 -224 1353 1061 745 186 90 0 chr4 129024798 129024965 -55263697 - LTR50 LTR ERVL -5 790 609 608 255 59 34 chr4 129025133 129025337 -55263325 - LTR16B LTR ERVL -210 254 46 723 170 82 44 chr4 129025405 129025587 -55263075 - MER53 DNA DNA 0 189 1 883 188 150 57 chr4 129025633 129026029 -55262633 - LTR50 LTR ERVL -178 617 99 2433 81 3 0 chr4 129026078 129026388 -55262274 + AluSp SINE Alu 1 311 -2 1882 145 3 3 chr4 129026681 129026995 -55261667 + AluSx SINE Alu 1 314 0 21 0 0 0 chr4 129027610 129027631 -55261031 + AT_rich Low_complexity Low_complexity 1 21 0 2360 175 103 45 chr4 129027877 129028364 -55260298 - MLT1F1 LTR MaLR 0 567 45 1636 185 15 108 chr4 129028364 129028764 -55259898 - MLT1A1 LTR MaLR 0 365 3 2360 175 103 45 chr4 129028764 129028808 -55259854 - MLT1F1 LTR MaLR -522 45 5 2318 99 3 0 chr4 129028988 129029290 -55259372 - AluSx SINE Alu -9 303 1 1078 210 82 102 chr4 129029968 129030254 -55258408 - MSTD LTR MaLR 0 396 106 2448 83 0 0 chr4 129030254 129030556 -55258106 - AluY SINE Alu -9 302 1 2089 112 63 0 chr4 129030557 129030844 -55257818 - AluSp SINE Alu -8 305 1 1078 210 82 102 chr4 129030844 129030959 -55257703 - MSTD LTR MaLR -289 107 1 249 33 0 0 chr4 129031614 129031644 -55257018 + (CA)n Simple_repeat Simple_repeat 2 31 0 1856 154 0 7 chr4 129031644 129031936 -55256726 - AluJb SINE Alu -22 290 1 22 0 0 0 chr4 129032153 129032175 -55256487 + AT_rich Low_complexity Low_complexity 1 22 0 384 352 31 6 chr4 129032231 129032393 -55256269 + MIR3 SINE MIR 38 203 -5 436 257 39 62 chr4 129033269 129033448 -55255214 + MIR SINE MIR 48 222 -40 184 211 158 0 chr4 129033731 129033788 -55254874 - L2 LINE L2 -50 3222 3157 370 171 15 104 chr4 129034143 129034258 -55254404 + MER110A LTR ERV1 81 170 -298 242 250 62 50 chr4 129034330 129034410 -55254252 + MER110 LTR ERV1 166 246 -245 2289 100 10 0 chr4 129034415 129034715 -55253947 + AluSx SINE Alu 2 304 -8 684 250 25 0 chr4 129034720 129034880 -55253782 + MER110 LTR ERV1 328 491 0 925 128 8 0 chr4 129035645 129035778 -55252884 + AluJo SINE Alu 1 134 -178 278 342 77 9 chr4 129036062 129036230 -55252432 - MIR SINE MIR -57 151 2 1205 189 50 117 chr4 129036527 129037006 -55251656 - MER39 LTR ERV1 0 688 257 473 238 9 9 chr4 129036989 129037094 -55251568 - MER34 LTR ERV1 -429 113 9 * 1873 134 3 34 chr4 129037119 129037417 -55251245 - AluSx SINE Alu -22 290 2 2114 116 7 3 chr4 129037660 129037961 -55250701 - AluSg SINE Alu -8 302 1 594 251 63 80 chr4 129039060 129039347 -55249315 - L2 LINE L2 0 3313 3032 277 247 0 55 chr4 129039541 129039614 -55249048 - MER91A DNA MER1_type -3 193 125 686 181 202 1 chr4 129039622 129039806 -55248856 + L1MA6 LINE L1 6068 6300 0 954 252 103 18 chr4 129039848 129040146 -55248516 - MLT1J LTR MaLR -141 370 38 2074 94 11 0 chr4 129040146 129040479 -55248183 + AluSp SINE Alu 1 313 0 954 252 103 18 chr4 129040479 129040521 -55248141 - MLT1J LTR MaLR -473 38 1 355 301 35 75 chr4 129040620 129040774 -55247888 + MIR SINE MIR 61 208 -54 2172 108 0 7 chr4 129040774 129041108 -55247554 + AluSq SINE Alu 1 332 0 355 301 35 75 chr4 129041108 129041151 -55247511 + MIR SINE MIR 208 251 -11 2118 105 3 39 chr4 129041326 129041632 -55247030 + AluSq SINE Alu 3 297 -16 239 355 13 0 chr4 129041799 129041875 -55246787 + MER91A DNA MER1_type 22 98 -98 23 0 0 0 chr4 129042850 129042873 -55245789 + AT_rich Low_complexity Low_complexity 1 23 0 1329 87 0 6 chr4 129042975 129043147 -55245515 - AluSq SINE Alu -10 303 133 2468 72 7 10 chr4 129043216 129043521 -55245141 - AluSg SINE Alu -6 304 1 1719 176 3 3 chr4 129043534 129043824 -55244838 - AluJo SINE Alu -22 290 1 404 270 61 0 chr4 129044549 129044664 -55243998 - L2 LINE L2 0 3313 3192 858 199 13 6 chr4 129044743 129044899 -55243763 + FRAM SINE Alu 1 157 -9 23 33 0 0 chr4 129044899 129044929 -55243733 + AT_rich Low_complexity Low_complexity 1 30 0 1096 236 100 35 chr4 129044929 129045328 -55243334 + L1ME3A LINE L1 5691 6115 -55 314 151 191 71 chr4 129046508 129046634 -55242028 - L1MC5 LINE L1 -48 7913 7773 242 113 81 16 chr4 129046638 129046700 -55241962 + CT-rich Low_complexity Low_complexity 3 68 0 2578 55 3 0 chr4 129046722 129047033 -55241629 - AluSx SINE Alu 0 312 1 250 246 0 15 chr4 129047040 129047105 -55241557 - L1MC5 LINE L1 -185 7776 7713 1196 161 9 36 chr4 129047105 129047328 -55241334 - AluJb SINE Alu -14 298 82 1954 162 3 0 chr4 129047369 129047677 -55240985 + AluSx SINE Alu 2 310 -2 635 154 0 16 chr4 129047680 129047803 -55240859 + GA-rich Low_complexity Low_complexity 4 124 0 246 252 118 44 chr4 129047820 129047955 -55240707 - L1MC5 LINE L1 -518 7443 7299 3021 181 62 57 chr4 129048101 129048190 -55240472 - LTR8A LTR ERV1 0 727 640 1753 123 17 55 chr4 129048190 129048529 -55240133 + AluSx SINE Alu 1 328 0 3021 181 62 57 chr4 129048529 129049161 -55239501 - LTR8A LTR ERV1 -87 640 1 217 324 0 14 chr4 129049177 129049251 -55239411 - MIR SINE MIR -117 91 19 4374 106 17 8 chr4 129049796 129050391 -55238271 - MER4A LTR ERV1 0 600 1 2253 88 0 0 chr4 129050446 129050776 -55237886 + AluY SINE Alu 1 330 0 2982 149 47 47 chr4 129051099 129051260 -55237402 - MER21A LTR ERV1 0 931 771 2310 73 0 14 chr4 129051260 129051575 -55237087 + AluSp SINE Alu 2 312 0 2982 149 47 47 chr4 129051575 129051962 -55236700 - MER21A LTR ERV1 -159 772 382 1256 136 92 0 chr4 129051973 129052201 -55236461 - MER21A LTR ERV1 -667 264 16 301 167 58 52 chr4 129052228 129052402 -55236260 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 742 199 0 15 chr4 129052407 129052543 -55236119 - AluJo SINE Alu -100 212 79 206 148 56 19 chr4 129052543 129052597 -55236065 + (CATATA)n Simple_repeat Simple_repeat 5 60 0 2619 114 35 50 chr4 129053611 129054015 -55234647 + MER48 LTR ERV1 1 398 0 1645 190 0 7 chr4 129054023 129054318 -55234344 - AluJo SINE Alu -19 293 1 180 217 0 0 chr4 129054845 129054891 -55233771 + (TA)n Simple_repeat Simple_repeat 2 47 0 1835 170 0 16 chr4 129055014 129055331 -55233331 + AluJb SINE Alu 1 312 0 23 0 0 0 chr4 129055396 129055419 -55233243 + AT_rich Low_complexity Low_complexity 1 23 0 352 269 50 71 chr4 129055778 129055960 -55232702 + MER5B DNA MER1_type 1 178 0 23 68 0 0 chr4 129056146 129056190 -55232472 + AT_rich Low_complexity Low_complexity 1 44 0 1932 141 11 0 chr4 129056556 129056840 -55231822 + AluJb SINE Alu 1 287 -25 1600 216 151 103 chr4 129056904 129057163 -55231499 + L1MC4 LINE L1 7084 7329 -713 316 73 0 0 chr4 129057163 129057204 -55231458 + MER4A LTR ERV1 554 594 -70 1600 216 151 103 chr4 129057204 129057364 -55231298 + L1MC4 LINE L1 7329 7480 -562 1631 175 49 11 chr4 129057364 129057649 -55231013 + AluJb SINE Alu 3 298 -14 2016 128 7 3 chr4 129057651 129057947 -55230715 + AluSx SINE Alu 3 299 -13 1600 216 151 103 chr4 129057947 129058138 -55230524 + L1MC4 LINE L1 7480 7660 -382 4957 109 13 34 chr4 129058138 129058841 -55229821 + LTR12 LTR ERV1 1 688 0 1600 216 151 103 chr4 129058841 129059089 -55229573 + L1MC4 LINE L1 7660 8042 0 1626 192 13 7 chr4 129059110 129059412 -55229250 + AluJb SINE Alu 1 304 -8 2209 113 3 0 chr4 129059544 129059836 -55228826 - AluSp SINE Alu -20 293 1 1964 137 3 32 chr4 129060002 129060315 -55228347 - AluSx SINE Alu -8 304 1 2023 106 31 17 chr4 129060322 129060614 -55228048 - AluSg SINE Alu -14 296 1 855 160 95 0 chr4 129060617 129060786 -55227876 - L1MB3 LINE L1 0 6183 5999 577 210 169 16 chr4 129060795 129061007 -55227655 - L1M4 LINE L1 -870 5276 5040 2226 92 0 26 chr4 129061169 129061472 -55227190 - AluSg SINE Alu -14 296 2 1314 205 123 69 chr4 129061810 129062200 -55226462 - MER31B LTR ERV1 -55 411 1 843 187 50 6 chr4 129062283 129062523 -55226139 - AluJb SINE Alu -16 296 2 496 210 32 16 chr4 129062526 129062650 -55226012 - MER31-int LTR ERV1 -1993 2943 2818 180 0 0 0 chr4 129063546 129063566 -55225096 + (TG)n Simple_repeat Simple_repeat 1 20 0 5747 57 8 12 chr4 129064295 129065050 -55223612 - L1MC/D LINE L1 0 6155 5385 372 94 0 0 chr4 129065408 129065461 -55223201 + (TTCC)n Simple_repeat Simple_repeat 3 55 0 1750 174 7 10 chr4 129065464 129065768 -55222894 - AluSx SINE Alu 0 312 10 227 218 30 30 chr4 129066457 129066558 -55222104 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 1817 123 15 0 chr4 129066894 129067162 -55221500 + AluSx SINE Alu 38 309 -3 1576 181 35 7 chr4 129067669 129067956 -55220706 - AluJb SINE Alu -17 295 1 1091 116 35 101 chr4 129069144 129069265 -55219397 - MER5A DNA MER1_type 0 189 84 1578 142 40 46 chr4 129069265 129069567 -55219095 - AluJo SINE Alu -8 304 5 1091 116 35 101 chr4 129069567 129069644 -55219018 - MER5A DNA MER1_type -105 84 4 22 0 0 0 chr4 129069817 129069839 -55218823 + AT_rich Low_complexity Low_complexity 1 22 0 1741 159 75 15 chr4 129070020 129070354 -55218308 + L1MB8 LINE L1 5816 6169 -9 1301 157 45 5 chr4 129070370 129070593 -55218069 + AluJo SINE Alu 65 296 -16 246 374 14 22 chr4 129070693 129070832 -55217830 - L2 LINE L2 -181 3091 2954 583 267 91 33 chr4 129070877 129071087 -55217575 + LTR33A LTR ERVL 212 433 -90 207 0 0 0 chr4 129071103 129071126 -55217536 + (A)n Simple_repeat Simple_repeat 1 23 0 210 299 83 83 chr4 129071285 129071429 -55217233 - L2 LINE L2 -559 2755 2612 357 227 0 0 chr4 129071445 129071511 -55217151 - Charlie1 DNA MER1_type 0 2761 2696 2223 102 0 0 chr4 129071511 129071819 -55216843 + AluSx SINE Alu 1 308 0 337 266 147 73 chr4 129071966 129072143 -55216519 - MLT1L LTR MaLR -425 190 1 425 235 198 43 chr4 129072316 129072503 -55216159 + MIR SINE MIR 8 223 -39 471 341 106 21 chr4 129072687 129072971 -55215691 - L3 LINE CR1 -600 977 670 357 140 0 0 chr4 129073087 129073144 -55215518 - AluS SINE Alu -251 57 1 562 210 91 14 chr4 129073153 129073296 -55215366 - MER31B-int LTR ERV1 -4765 171 18 1839 166 111 82 chr4 129073352 129073560 -55215102 - MER31B LTR ERV1 -1 465 264 1895 151 3 43 chr4 129073560 129073884 -55214778 - AluJo SINE Alu -1 311 1 1839 166 111 82 chr4 129073884 129074079 -55214583 - MER31B LTR ERV1 -202 264 45 1953 133 0 44 chr4 129074079 129074394 -55214268 - AluSx SINE Alu -11 301 1 1839 166 111 82 chr4 129074394 129074441 -55214221 - MER31B LTR ERV1 -421 45 1 375 109 0 78 chr4 129074447 129074511 -55214151 + MER45 DNA AcHobo 1523 1581 0 1222 125 0 22 chr4 129074895 129075079 -55213583 + AluSg/x SINE Alu 117 296 -16 1784 169 93 9 chr4 129075359 129075703 -55212959 + MSTD LTR MaLR 1 373 -23 2170 111 0 29 chr4 129075703 129076010 -55212652 + AluSx SINE Alu 9 306 -6 2289 112 0 3 chr4 129076010 129076313 -55212349 + AluSg SINE Alu 1 302 -8 2333 104 0 0 chr4 129077686 129077993 -55210669 - AluSc SINE Alu -1 308 2 1573 108 0 5 chr4 129078481 129078693 -55209969 - AluSx SINE Alu 0 312 102 875 119 0 15 chr4 129078693 129078827 -55209835 + AluJo SINE Alu 2 133 -169 845 137 0 0 chr4 129078847 129078964 -55209698 - AluSx SINE Alu -195 117 1 347 167 48 36 chr4 129079009 129079093 -55209569 - MLT1H1 LTR MaLR 0 555 471 1836 198 50 88 chr4 129079136 129079208 -55209454 + L1MC5 LINE L1 6957 7030 -931 604 202 0 0 chr4 129079208 129079312 -55209350 + U13 snRNA snRNA 1 104 0 186 43 0 0 chr4 129079319 129079342 -55209320 + (TAAAA)n Simple_repeat Simple_repeat 4 26 0 1836 198 50 88 chr4 129079342 129079915 -55208747 + L1MC5 LINE L1 7036 7579 -382 1899 169 16 0 chr4 129079915 129080222 -55208440 + AluJb SINE Alu 1 312 0 1836 198 50 88 chr4 129080222 129080328 -55208334 + L1MC5 LINE L1 7579 7688 -273 918 188 0 0 chr4 129080356 129080505 -55208157 + AluJo SINE Alu 140 288 -24 614 211 48 48 chr4 129080505 129080713 -55207949 + L1MC5 LINE L1 7700 7907 -54 777 290 29 0 chr4 129082409 129082616 -55206046 - MIR SINE MIR -25 237 25 545 82 4 2 chr4 129082864 129083109 -55205553 + AluSg SINE Alu 1 303 -8 1869 143 17 17 chr4 129083121 129083421 -55205241 - AluSq SINE Alu -13 300 1 1983 109 28 3 chr4 129083445 129083730 -55204932 - AluSx SINE Alu -20 292 1 2000 142 0 3 chr4 129084285 129084580 -55204082 + AluSg SINE Alu 1 294 -16 2175 79 0 49 chr4 129084628 129084933 -55203729 + AluY SINE Alu 1 290 -21 282 29 0 0 chr4 129084933 129084968 -55203694 + (TA)n Simple_repeat Simple_repeat 1 35 0 1797 83 0 4 chr4 129085755 129085766 -55202896 - AluSg/x SINE Alu -19 293 283 234 0 0 0 chr4 129085766 129085792 -55202870 + (TG)n Simple_repeat Simple_repeat 1 26 0 1797 83 0 4 chr4 129085792 129086009 -55202653 - AluSg/x SINE Alu -29 283 66 327 327 118 33 chr4 129086104 129086376 -55202286 - L1MC4a LINE L1 -1639 6169 5875 222 37 0 0 chr4 129086533 129086560 -55202102 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2092 121 0 0 chr4 129086562 129086842 -55201820 - AluSx SINE Alu -32 280 1 2256 132 0 0 chr4 129087020 129087330 -55201332 - AluSx SINE Alu -2 310 1 915 146 0 29 chr4 129087615 129087752 -55200910 + FLAM_C SINE Alu 1 133 0 36 40 0 0 chr4 129087755 129087805 -55200857 + AT_rich Low_complexity Low_complexity 1 50 0 1199 151 130 164 chr4 129088268 129088407 -55200255 + L1MC3 LINE L1 6855 6997 -788 2169 89 0 61 chr4 129088407 129088720 -55199942 + AluSg SINE Alu 1 294 -16 1199 151 130 164 chr4 129088720 129088844 -55199818 + L1MC3 LINE L1 6997 7124 -661 256 207 17 0 chr4 129088844 129088902 -55199760 + MLT1F1 LTR MaLR 35 93 -474 1199 151 130 164 chr4 129088902 129089111 -55199551 + L1MC3 LINE L1 7124 7367 -418 1907 162 0 3 chr4 129089111 129089414 -55199248 + AluJb SINE Alu 11 312 0 2278 92 3 3 chr4 129089432 129089727 -55198935 - AluSp SINE Alu -18 295 1 978 154 175 31 chr4 129089729 129090015 -55198647 + L1MC3 LINE L1 7459 7785 0 241 364 0 0 chr4 129090505 129090571 -55198091 + L2 LINE L2 3204 3269 -3 654 272 121 15 chr4 129092570 129092842 -55195820 + L2 LINE L2 2418 2718 -596 2351 96 0 3 chr4 129092845 129093147 -55195515 + AluSq SINE Alu 3 303 -10 1290 108 0 0 chr4 129093147 129093314 -55195348 + AluSg/x SINE Alu 132 298 -12 301 272 187 42 chr4 129093333 129093570 -55195092 + L2 LINE L2 2779 3050 -263 1795 175 0 3 chr4 129093575 129093861 -55194801 + AluJb SINE Alu 1 285 -27 2088 117 7 0 chr4 129093882 129094173 -55194489 + AluSq SINE Alu 1 293 -20 997 205 5 5 chr4 129094480 129094704 -55193958 - AluSp SINE Alu -17 296 73 282 95 0 0 chr4 129094815 129094857 -55193805 + (A)n Simple_repeat Simple_repeat 1 42 0 225 0 0 0 chr4 129095136 129095161 -55193501 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 2022 134 0 3 chr4 129095167 129095458 -55193204 - AluSp SINE Alu -23 290 1 2121 116 10 13 chr4 129095469 129095779 -55192883 - AluSp SINE Alu -4 309 1 2268 106 0 0 chr4 129095780 129096073 -55192589 - AluSx SINE Alu -15 297 5 1054 152 0 6 chr4 129096256 129096420 -55192242 - AluJb SINE Alu -8 304 142 2110 134 3 10 chr4 129097058 129097371 -55191291 + AluSq SINE Alu 1 311 -2 1093 158 11 6 chr4 129098318 129098501 -55190161 + AluJb SINE Alu 124 307 -5 1421 135 0 5 chr4 129098516 129098724 -55189938 + AluSg/x SINE Alu 83 289 -21 2342 98 0 10 chr4 129099000 129099306 -55189356 + AluSx SINE Alu 1 303 -9 340 103 15 15 chr4 129099891 129099959 -55188703 + (GA)n Simple_repeat Simple_repeat 1 68 0 1812 131 57 3 chr4 129100181 129100464 -55188198 - AluJb SINE Alu -14 298 1 1750 203 52 43 chr4 129100464 129100755 -55187907 - MLT1C LTR MaLR 0 467 180 180 0 0 0 chr4 129100755 129100775 -55187887 + (TTC)n Simple_repeat Simple_repeat 2 21 0 1807 93 32 97 chr4 129100777 129101088 -55187574 - AluSx SINE Alu -21 291 1 1750 203 52 43 chr4 129101088 129101256 -55187406 - MLT1C LTR MaLR -287 180 1 1407 144 63 0 chr4 129101369 129101591 -55187071 + AluSq SINE Alu 45 280 -33 186 71 0 0 chr4 129101593 129101621 -55187041 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 2212 128 0 0 chr4 129101662 129101960 -55186702 - AluSx SINE Alu -14 298 1 956 120 0 0 chr4 129101968 129102093 -55186569 - AluSq/x SINE Alu -187 125 1 1245 174 19 42 chr4 129102095 129102406 -55186256 + MER31-int LTR ERV1 1188 1491 -3445 1614 168 11 7 chr4 129102406 129102691 -55185971 + AluJb SINE Alu 1 286 -26 3410 173 58 128 chr4 129102703 129103933 -55184729 + MER31-int LTR ERV1 1477 2619 -2317 2083 102 32 3 chr4 129103938 129104221 -55184441 + AluSx SINE Alu 4 294 -18 1220 65 7 0 chr4 129104333 129104487 -55184175 + AluY SINE Alu 149 303 -8 2456 61 3 0 chr4 129104487 129104783 -55183879 + AluY SINE Alu 1 297 -14 857 277 62 58 chr4 129105537 129105700 -55182962 - L2 LINE L2 -10 3303 3142 1370 194 58 48 chr4 129105700 129106009 -55182653 + AluJo SINE Alu 1 312 0 857 277 62 58 chr4 129106009 129106326 -55182336 - L2 LINE L2 -171 3142 2792 565 212 127 1 chr4 129106317 129106471 -55182191 - MER5B DNA MER1_type -7 182 1 * 518 323 0 6 chr4 129106477 129106644 -55182018 - L2 LINE L2 -509 2805 2640 439 173 0 0 chr4 129106645 129106720 -55181942 - L1ME LINE L1 -467 5697 5623 * 1966 188 48 8 chr4 129106716 129107116 -55181546 + L1ME2 LINE L1 5730 6145 -19 1003 199 58 80 chr4 129107107 129107262 -55181400 + L1ME LINE L1 5416 5573 -593 * 1840 142 3 30 chr4 129107262 129107565 -55181097 + AluJb SINE Alu 6 300 -12 1003 199 58 80 chr4 129107565 129107576 -55181086 + L1ME LINE L1 5573 5583 -583 2247 96 0 3 chr4 129107576 129107867 -55180795 - AluSc SINE Alu -15 294 5 1003 199 58 80 chr4 129107867 129108010 -55180652 + L1ME LINE L1 5583 5719 -447 863 263 84 28 chr4 129108038 129108358 -55180304 - L2 LINE L2 -671 2643 2306 549 158 0 59 chr4 129108721 129108831 -55179831 - MLT1F LTR MaLR -2 540 466 2230 87 6 19 chr4 129108831 129109143 -55179519 + AluSg SINE Alu 1 308 -2 549 158 0 59 chr4 129109143 129109172 -55179490 - MLT1F LTR MaLR -76 466 437 1824 236 54 16 chr4 129109187 129109632 -55179030 - MLT1F LTR MaLR -79 463 2 1508 200 48 0 chr4 129109721 129110011 -55178651 - AluJo SINE Alu -8 304 1 2125 89 4 0 chr4 129110112 129110405 -55178257 - AluSx SINE Alu 0 316 23 26 30 0 0 chr4 129110650 129110683 -55177979 + AT_rich Low_complexity Low_complexity 1 33 0 725 219 0 0 chr4 129110714 129110851 -55177811 + AluSp/q SINE Alu 174 310 -3 236 327 32 13 chr4 129111352 129111508 -55177154 - L1ME LINE L1 -558 5608 5450 2248 95 0 3 chr4 129111513 129111796 -55176866 - AluSx SINE Alu -30 282 1 2168 129 7 0 chr4 129112213 129112522 -55176140 - AluSp SINE Alu -2 311 1 403 90 0 15 chr4 129113665 129113725 -55174937 - L1MD1 LINE L1 -6 6236 6176 2392 109 0 0 chr4 129113725 129114036 -55174626 + AluSx SINE Alu 1 311 -1 4367 179 31 48 chr4 129114128 129114634 -55174028 - L1MC4a LINE L1 -25 7783 7270 1969 141 0 0 chr4 129114634 129114917 -55173745 - AluSx SINE Alu -29 283 1 4367 179 31 48 chr4 129114917 129115323 -55173339 - L1MC4a LINE L1 -538 7270 6859 2153 107 7 13 chr4 129115323 129115631 -55173031 - AluSc SINE Alu -3 306 1 4367 179 31 48 chr4 129115631 129115943 -55172719 - L1MC4a LINE L1 -949 6859 4988 748 266 12 36 chr4 129116135 129116383 -55172279 + MIR SINE MIR 14 255 -7 325 258 97 24 chr4 129116772 129116896 -55171766 + L1ME4a LINE L1 5557 5689 -432 2304 96 3 13 chr4 129116897 129117210 -55171452 + AluSq SINE Alu 1 310 -3 2242 121 0 0 chr4 129117277 129117582 -55171080 + AluSx SINE Alu 7 311 -1 3181 105 67 8 chr4 129117660 129118138 -55170524 - MER84 LTR ERV1 0 507 2 395 139 42 14 chr4 129118138 129118210 -55170452 - MER84 LTR ERVI -433 74 1 268 295 32 26 chr4 129118294 129118450 -55170212 + L1ME4a LINE L1 5889 6045 -76 1997 126 7 3 chr4 129118479 129118764 -55169898 + AluSx SINE Alu 1 286 -26 21 0 0 0 chr4 129118764 129118785 -55169877 + AT_rich Low_complexity Low_complexity 1 21 0 254 298 132 8 chr4 129118874 129118995 -55169667 - L2 LINE L2 0 3272 3137 672 283 163 28 chr4 129119401 129119966 -55168696 - L2 LINE L2 -584 2730 2090 678 260 140 10 chr4 129120328 129120628 -55168034 - L2 LINE L2 -1217 2097 1759 208 296 130 0 chr4 129120967 129121082 -55167580 - L2 LINE L2 -2007 1307 1178 408 312 10 24 chr4 129121215 129121420 -55167242 + L2 LINE L2 2141 2342 -972 234 317 79 0 chr4 129121547 129121648 -55167014 + L2 LINE L2 2424 2532 -782 200 233 0 67 chr4 129122603 129122663 -55165999 + L2 LINE L2 3006 3061 -252 208 198 116 58 chr4 129122774 129122860 -55165802 + L2 LINE L2 3222 3312 -1 707 185 83 0 chr4 129122928 129123085 -55165577 - MER5A DNA MER1_type -1 188 19 291 318 23 40 chr4 129123185 129123358 -55165304 - L2 LINE L2 -2422 892 723 26 76 0 13 chr4 129124122 129124145 -55164517 + AT_rich Low_complexity Low_complexity 1 23 -55 2083 111 10 14 chr4 129124145 129124301 -55164361 - AluSp SINE Alu -23 290 134 2414 98 0 0 chr4 129124301 129124607 -55164055 - AluSg SINE Alu -3 307 2 2083 111 10 14 chr4 129124607 129124739 -55163923 - AluSp SINE Alu -179 134 3 26 76 0 13 chr4 129124739 129124794 -55163868 + AT_rich Low_complexity Low_complexity 23 78 0 1797 163 0 7 chr4 129124946 129125241 -55163421 + AluJb SINE Alu 4 296 -16 223 241 126 0 chr4 129126047 129126134 -55162528 - MIR3 SINE MIR -1 207 110 2492 48 0 0 chr4 129126411 129126702 -55161960 - AluY SINE Alu -20 291 1 316 235 77 65 chr4 129126871 129127041 -55161621 - MIR SINE MIR -79 183 12 206 255 0 0 chr4 129127065 129127116 -55161546 + (TAA)n Simple_repeat Simple_repeat 2 52 0 2250 78 3 3 chr4 129127468 129127772 -55160890 - AluSp SINE Alu 0 304 1 27 29 0 0 chr4 129128747 129128781 -55159881 + GC_rich Low_complexity Low_complexity 1 34 0 219 244 49 0 chr4 129128852 129128934 -55159728 + (CG)n Simple_repeat Simple_repeat 1 86 0 267 31 0 0 chr4 129128944 129128976 -55159686 + (CGG)n Simple_repeat Simple_repeat 3 34 0 216 0 0 0 chr4 129129422 129129446 -55159216 + (T)n Simple_repeat Simple_repeat 1 24 0 186 43 0 0 chr4 129129704 129129727 -55158935 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 43 63 0 27 chr4 129130592 129130703 -55157959 + GC_rich Low_complexity Low_complexity 1 108 0 189 0 0 0 chr4 129131269 129131290 -55157372 + (GGA)n Simple_repeat Simple_repeat 1 21 0 2482 70 0 19 chr4 129132379 129132692 -55155970 - AluSg SINE Alu -3 307 1 241 245 223 22 chr4 129133354 129133493 -55155169 - L1ME4a LINE L1 -11 6110 5944 2408 73 17 3 chr4 129133532 129133834 -55154828 - AluSq SINE Alu -7 306 1 2121 46 3 149 chr4 129134022 129134370 -55154292 - AluY SINE Alu -13 298 2 1799 144 74 0 chr4 129135844 129136129 -55152533 - AluSx SINE Alu -6 306 1 504 133 67 100 chr4 129136171 129136291 -55152371 - AluJb SINE Alu -179 133 18 2234 114 0 0 chr4 129137095 129137392 -55151270 - AluSx SINE Alu -15 297 1 953 240 132 4 chr4 129137559 129137817 -55150845 - MER58B DNA MER1_type -14 327 37 1000 177 126 5 chr4 129137838 129138053 -55150609 - AluJo SINE Alu -27 285 45 285 54 0 0 chr4 129138211 129138248 -55150414 - AluSp/q SINE Alu -28 275 239 565 187 81 0 chr4 129138249 129138372 -55150290 - AluJb SINE Alu -18 294 162 2310 114 0 0 chr4 129139086 129139383 -55149279 - AluSx SINE Alu -15 297 1 2270 75 0 81 chr4 129140459 129140793 -55147869 - AluSq SINE Alu -6 307 1 1076 141 0 0 chr4 129141192 129141348 -55147314 + AluSg/x SINE Alu 137 292 -20 2434 56 7 26 chr4 129141402 129141706 -55146956 + AluSp SINE Alu 1 298 -15 2194 62 43 43 chr4 129143108 129143413 -55145249 + AluY SINE Alu 1 305 -6 1975 156 3 3 chr4 129144010 129144311 -55144351 - AluSx SINE Alu -11 301 1 206 261 160 17 chr4 129144579 129144698 -55143964 + L2 LINE L2 3123 3258 -55 402 213 0 0 chr4 129145246 129145321 -55143341 + MER31A LTR ERV1 351 425 -60 1775 117 3 129 chr4 129145338 129145672 -55142990 - AluSq SINE Alu -21 292 1 1266 179 145 66 chr4 129145794 129146236 -55142426 + MER31A LTR ERV1 1 477 -8 720 175 7 15 chr4 129147778 129147915 -55140747 - AluJo SINE Alu -175 137 2 415 181 81 124 chr4 129148504 129148763 -55139899 - MER34 LTR ERV1 0 542 295 2180 125 0 0 chr4 129148851 129149147 -55139515 - AluSg SINE Alu -14 296 1 183 80 0 0 chr4 129149201 129149226 -55139436 + (TG)n Simple_repeat Simple_repeat 2 26 0 2217 90 14 0 chr4 129149226 129149505 -55139157 - AluSx SINE Alu -29 283 1 289 224 9 84 chr4 129150032 129150139 -55138523 + MIR3 SINE MIR 86 184 -24 2142 79 32 7 chr4 129152394 129152674 -55135988 + AluSc SINE Alu 2 288 -21 569 126 19 29 chr4 129152941 129153044 -55135618 + MER3 DNA MER1_type 108 209 0 1549 183 87 33 chr4 129153112 129153478 -55135184 - MLT1B LTR MaLR -2 388 3 2216 99 3 10 chr4 129153502 129153806 -55134856 - AluY SINE Alu -9 302 1 818 128 0 30 chr4 129153839 129153972 -55134690 + FLAM_C SINE Alu 5 133 0 1824 132 108 72 chr4 129155150 129155568 -55133094 - Tigger2a DNA MER2_type 0 434 2 805 99 0 151 chr4 129155709 129155861 -55132801 - AluSg/x SINE Alu -13 297 169 1274 193 121 68 chr4 129158411 129158851 -55129811 - L1ME2 LINE L1 -9 6155 5693 276 308 109 32 chr4 129160441 129160844 -55127818 - L2 LINE L2 -835 2479 2046 2076 139 7 0 chr4 129161261 129161571 -55127091 - AluSx SINE Alu 0 312 1 768 202 10 71 chr4 129162078 129162276 -55126386 + MIR SINE MIR 77 262 0 2025 131 0 30 chr4 129164604 129164909 -55123753 + AluSx SINE Alu 1 296 -16 2196 104 7 10 chr4 129167147 129167446 -55121216 - AluSx SINE Alu -10 302 5 268 226 16 48 chr4 129168381 129168443 -55120219 - MIR3 SINE MIR -49 159 100 402 328 40 0 chr4 129168773 129168950 -55119712 + MER117 DNA MER1_type 3 186 -11 1907 133 0 60 chr4 129168983 129169299 -55119363 + AluSx SINE Alu 1 297 -15 1943 143 38 0 chr4 129169902 129170189 -55118473 - AluSx SINE Alu -12 300 3 1258 191 40 12 chr4 129170654 129170905 -55117757 - AluJb SINE Alu -28 284 27 1690 194 64 60 chr4 129171612 129171888 -55116774 - MLT1C LTR MaLR 0 467 187 1685 112 151 0 chr4 129171888 129172147 -55116515 - AluSg SINE Alu -12 298 1 1690 194 64 60 chr4 129172147 129172323 -55116339 - MLT1C LTR MaLR -280 187 13 23 33 0 0 chr4 129173882 129173912 -55114750 + AT_rich Low_complexity Low_complexity 1 30 0 1796 177 3 3 chr4 129174779 129175090 -55113572 - AluJo SINE Alu -1 311 1 2414 62 0 23 chr4 129177575 129177879 -55110783 - AluSg SINE Alu -13 297 1 471 225 0 0 chr4 129178143 129178281 -55110381 + (TG)n Simple_repeat Simple_repeat 2 139 0 525 265 0 0 chr4 129178303 129178588 -55110074 + (TG)n Simple_repeat Simple_repeat 1 285 0 909 142 0 0 chr4 129180354 129180481 -55108181 + FLAM_C SINE Alu 1 127 -6 228 67 0 0 chr4 129181866 129181896 -55106766 + (TG)n Simple_repeat Simple_repeat 1 30 0 2094 114 35 0 chr4 129183124 129183413 -55105249 - AluSx SINE Alu -13 299 1 226 197 333 0 chr4 129184224 129184290 -55104372 + MER5A DNA MER1_type 1 88 -101 190 317 109 10 chr4 129187202 129187303 -55101359 + MIR SINE MIR 118 228 -34 543 225 70 8 chr4 129189485 129189614 -55099048 - MER112 DNA MER1_type -25 235 99 295 232 18 116 chr4 129189747 129189859 -55098803 - MIR SINE MIR 0 262 162 432 130 0 0 chr4 129192222 129192291 -55096371 + (A)n Simple_repeat Simple_repeat 1 69 0 209 95 27 68 chr4 129193452 129193526 -55095136 + (CAAAAA)n Simple_repeat Simple_repeat 2 72 0 352 317 77 41 chr4 129194449 129194695 -55093967 + MIR SINE MIR 8 262 0 27 0 0 0 chr4 129194800 129194827 -55093835 + AT_rich Low_complexity Low_complexity 1 27 0 216 152 22 22 chr4 129194916 129194962 -55093700 - MIR SINE MIR -106 102 57 763 192 138 9 chr4 129196141 129196344 -55092318 - MIR SINE MIR -24 238 19 2267 102 0 3 chr4 129196369 129196663 -55091999 + AluSg SINE Alu 1 293 -17 1284 40 13 0 chr4 129197956 129198107 -55090555 + L1PA5 LINE L1 6001 6153 -1 185 453 0 0 chr4 129198313 129198388 -55090274 + L3 LINE CR1 35 109 -1468 504 298 105 6 chr4 129198485 129198656 -55090006 + MIR SINE MIR 61 248 -14 1123 163 6 2 chr4 129199071 129200236 -55088426 + ALR/Alpha Satellite centromeric 1 1169 -36 1207 142 5 1 chr4 129200336 129201388 -55087274 - ALR/Alpha Satellite centromeric 0 1055 1 1210 154 2 1 chr4 129201488 129202838 -55085824 + ALR/Alpha Satellite centromeric 1 1351 -31 12904 37 0 1 chr4 129202938 129204487 -55084175 + L1P LINE L1 2898 4444 -1702 1931 112 0 64 chr4 129204600 129204913 -55083749 + AluSg SINE Alu 1 293 -17 2437 63 0 3 chr4 129204940 129205239 -55083423 + AluY SINE Alu 1 298 -13 270 350 129 23 chr4 129205700 129206094 -55082568 + L3 LINE CR1 270 705 -872 698 223 202 30 chr4 129206189 129206422 -55082240 + L3 LINE CR1 735 1007 -570 355 321 147 43 chr4 129208269 129208585 -55080077 - L2 LINE L2 0 3313 2937 2206 100 13 13 chr4 129208585 129208896 -55079766 + AluSx SINE Alu 2 312 0 355 321 147 43 chr4 129208896 129209021 -55079641 - L2 LINE L2 -376 2937 2826 1401 96 0 21 chr4 129209103 129209291 -55079371 + L1PA7 LINE L1 5971 6154 0 243 340 123 9 chr4 129209374 129209480 -55079182 + L2 LINE L2 2576 2693 -621 1396 196 84 18 chr4 129210388 129210663 -55077999 - AluJb SINE Alu -19 293 1 1043 272 163 24 chr4 129211017 129211724 -55076938 - L1MC4a LINE L1 -1750 6058 5254 21 0 0 0 chr4 129211808 129211829 -55076833 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 129212195 129212217 -55076445 + AT_rich Low_complexity Low_complexity 1 22 0 205 332 162 35 chr4 129212312 129212541 -55076121 + L3b LINE CR1 1283 1540 -43 600 196 65 26 chr4 129212718 129212897 -55075765 - MIR SINE MIR -41 221 36 23 86 0 0 chr4 129213210 129213268 -55075394 + AT_rich Low_complexity Low_complexity 1 58 0 694 230 152 6 chr4 129213711 129213844 -55074818 + MER3 DNA MER1_type 1 168 -41 210 37 0 0 chr4 129213844 129213871 -55074791 + (TTTAA)n Simple_repeat Simple_repeat 1 27 0 694 230 152 6 chr4 129213871 129213915 -55074747 + MER3 DNA MER1_type 168 204 -5 1556 195 0 23 chr4 129213923 129214230 -55074432 - AluJb SINE Alu -6 306 7 335 173 133 0 chr4 129214777 129214852 -55073810 - MER5A DNA MER1_type -22 167 83 1874 165 86 25 chr4 129214933 129215332 -55073330 + MLT1C LTR MaLR 38 593 0 595 154 45 0 chr4 129217040 129217150 -55071512 + L1MB2 LINE L1 6057 6171 0 2112 126 3 3 chr4 129217362 129217663 -55070999 - AluSx SINE Alu -11 301 1 242 314 182 16 chr4 129218372 129218493 -55070169 - L2 LINE L2 -4 3268 3128 684 246 17 114 chr4 129219154 129219267 -55069395 - MIR SINE MIR 0 262 140 2340 73 3 0 chr4 129219267 129219556 -55069106 - AluY SINE Alu -21 290 1 684 246 17 114 chr4 129219556 129219647 -55069015 - MIR SINE MIR -122 140 90 1893 157 0 7 chr4 129219647 129219957 -55068705 - AluJb SINE Alu 0 308 1 684 246 17 114 chr4 129219957 129220039 -55068623 - MIR SINE MIR -172 90 2 261 0 0 0 chr4 129220079 129220108 -55068554 + (CA)n Simple_repeat Simple_repeat 2 30 0 303 363 74 42 chr4 129220231 129220368 -55068294 + L2 LINE L2 2332 2463 -851 2218 102 3 0 chr4 129220368 129220671 -55067991 - AluSx SINE Alu -8 304 1 303 363 74 42 chr4 129220671 129220817 -55067845 + L2 LINE L2 2463 2624 -690 43676 42 4 1 chr4 129221245 129227377 -55061285 + L1PA4 LINE L1 2 6152 -3 192 245 0 0 chr4 129227536 129227589 -55061073 + (CATA)n Simple_repeat Simple_repeat 3 55 0 1655 156 52 14 chr4 129227610 129227898 -55060764 - AluJo SINE Alu -11 301 3 5449 185 94 40 chr4 129227970 129229135 -55059527 - Tigger3b DNA MER2_type -1 1230 3 396 306 35 29 chr4 129229629 129229802 -55058860 + L3b LINE CR1 1342 1515 -68 254 172 16 16 chr4 129230272 129230336 -55058326 - L1PA16 LINE L1 -159 6007 5944 1539 282 100 62 chr4 129230663 129231542 -55057120 + L2 LINE L2 2120 3035 -237 2399 71 0 3 chr4 129231940 129232235 -55056427 - AluY SINE Alu -17 294 1 627 332 130 46 chr4 129232459 129233414 -55055248 - L2 LINE L2 -1 3271 2242 192 77 0 0 chr4 129234118 129234144 -55054518 + (A)n Simple_repeat Simple_repeat 1 26 0 292 255 21 21 chr4 129234607 129234701 -55053961 + MLT1I LTR MaLR 281 374 -35 479 312 173 51 chr4 129234740 129234989 -55053673 + L2 LINE L2 2831 3048 -265 1710 182 10 0 chr4 129234989 129235285 -55053377 - AluJo SINE Alu -13 299 1 479 312 173 51 chr4 129235285 129235464 -55053198 + L2 LINE L2 3048 3311 -2 192 368 31 25 chr4 129235636 129235799 -55052863 - L2 LINE L2 -570 2744 2581 760 311 49 35 chr4 129235828 129236233 -55052429 - L1MC/D LINE L1 -2134 5674 5264 21 36 0 0 chr4 129236394 129236422 -55052240 + AT_rich Low_complexity Low_complexity 1 28 0 2269 96 0 7 chr4 129236719 129237011 -55051651 + AluSq SINE Alu 1 290 -23 25 0 0 0 chr4 129237320 129237345 -55051317 + AT_rich Low_complexity Low_complexity 1 25 0 30 59 0 0 chr4 129238131 129238182 -55050480 + AT_rich Low_complexity Low_complexity 1 51 0 371 119 15 0 chr4 129238409 129238476 -55050186 + (TCC)n Simple_repeat Simple_repeat 3 70 0 1427 259 141 5 chr4 129238979 129239427 -55049235 - L2 LINE L2 -1744 1570 1062 501 225 29 81 chr4 129239432 129239641 -55049021 + L2 LINE L2 3047 3244 -69 2341 75 7 3 chr4 129239823 129240117 -55048545 + AluY SINE Alu 2 296 -15 252 0 0 0 chr4 129241453 129241481 -55047181 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 403 306 117 0 chr4 129241481 129241592 -55047070 - L2 LINE L2 -13 3259 3136 202 371 16 0 chr4 129241700 129241762 -55046900 + L2 LINE L2 3187 3249 -23 1242 210 33 30 chr4 129242586 129242739 -55045923 + MER74A LTR ERVL 16 167 -391 198 0 0 0 chr4 129242739 129242761 -55045901 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 1242 210 33 30 chr4 129242761 129243036 -55045626 + MER74A LTR ERVL 167 524 -34 1241 188 14 21 chr4 129244011 129244298 -55044364 + L1PA15 LINE L1 1862 2146 -4641 14598 185 21 7 chr4 129244301 129246063 -55042599 + L1PA15 LINE L1 2766 4501 -2315 1717 154 31 0 chr4 129246063 129246323 -55042339 - AluSx SINE Alu -44 268 1 14598 185 21 7 chr4 129246323 129248546 -55040116 + L1PA15 LINE L1 4501 6809 -7 343 338 75 28 chr4 129248556 129248769 -55039893 + L1MEd LINE L1 1036 1258 -4947 1505 212 111 45 chr4 129248791 129248903 -55039759 - L1ME1 LINE L1 -8 6158 6055 2381 96 3 0 chr4 129248903 129249206 -55039456 + AluSx SINE Alu 1 304 -8 1505 212 111 45 chr4 129249206 129249560 -55039102 - L1ME1 LINE L1 -111 6055 5661 1115 179 19 24 chr4 129249562 129249774 -55038888 - AluJo SINE Alu -20 292 82 324 271 31 10 chr4 129249775 129249871 -55038791 - L1ME1 LINE L1 -490 5676 5579 * 576 166 175 91 chr4 129249866 129250007 -55038655 - L1ME1 LINE L1 -841 5305 5177 1702 174 30 10 chr4 129250007 129250312 -55038350 - AluSx SINE Alu -1 311 1 576 166 175 91 chr4 129250312 129250490 -55038172 - L1ME1 LINE L1 -969 5177 4959 1560 255 70 61 chr4 129250491 129251043 -55037619 + MLT1F1 LTR MaLR 2 562 -5 558 268 62 45 chr4 129251053 129251086 -55037576 - L1MEc LINE L1 -5063 1333 1302 1963 115 68 0 chr4 129251086 129251364 -55037298 - AluSx SINE Alu -15 297 1 558 268 62 45 chr4 129251364 129251752 -55036910 - L1MEc LINE L1 -5094 1302 905 36 0 0 0 chr4 129251752 129251788 -55036874 + AT_rich Low_complexity Low_complexity 1 36 0 257 206 0 16 chr4 129251890 129251953 -55036709 - L1MEc LINE L1 -5663 733 672 640 291 25 0 chr4 129252147 129252343 -55036319 + L1MEd LINE L1 1555 1755 -4641 448 302 73 40 chr4 129252534 129252862 -55035800 + L1MEd LINE L1 1929 2267 -4129 2689 258 107 57 chr4 129252979 129253045 -55035617 + L1MEd LINE L1 2938 2999 -3216 1755 173 0 14 chr4 129253045 129253334 -55035328 + AluJb SINE Alu 17 301 -11 2689 258 107 57 chr4 129253334 129253869 -55034793 + L1MEd LINE L1 2999 3506 -2709 183 42 0 0 chr4 129253869 129253893 -55034769 + (CAA)n Simple_repeat Simple_repeat 1 24 0 2689 258 107 57 chr4 129253893 129254318 -55034344 + L1MEd LINE L1 3506 3909 -2306 2136 92 0 0 chr4 129254318 129254589 -55034073 + AluSq SINE Alu 29 299 -14 2689 258 107 57 chr4 129254589 129255549 -55033113 + L1MEd LINE L1 3909 5024 -1191 574 170 19 0 chr4 129255572 129255678 -55032984 - MLT1A2 LTR MaLR 0 374 267 1892 217 103 29 chr4 129255756 129256281 -55032381 + MLT1F1 LTR MaLR 4 567 0 2297 78 0 0 chr4 129257201 129257502 -55031160 - AluY SINE Alu 0 301 1 3864 162 32 4 chr4 129258193 129258921 -55029741 + L1 LINE L1 3978 4725 -1421 997 212 13 112 chr4 129258962 129259354 -55029308 - L1MC5 LINE L1 -884 7077 6725 584 304 129 64 chr4 129259359 129260141 -55028521 - L1MC4a LINE L1 -1133 6675 5843 1708 257 95 29 chr4 129260143 129260913 -55027749 - L1MC4a LINE L1 -1538 4608 3788 335 304 9 9 chr4 129261039 129261151 -55027511 + L2 LINE L2 1856 1967 -1347 805 293 70 4 chr4 129261159 129261401 -55027261 + MIR SINE MIR 5 262 0 577 344 87 13 chr4 129261442 129261753 -55026909 + L2 LINE L2 2039 2372 -942 294 280 65 32 chr4 129261765 129261858 -55026804 + L2 LINE L2 2579 2674 -640 245 53 0 0 chr4 129261864 129261902 -55026760 - L1MC2 LINE L1 -11 6333 6296 193 312 39 13 chr4 129261936 129262013 -55026649 + L2 LINE L2 2680 2758 -556 364 239 23 11 chr4 129262070 129262158 -55026504 - MER58B DNA MER1_type -1 340 252 2415 93 0 3 chr4 129262737 129263047 -55025615 + AluSg SINE Alu 1 309 -1 930 220 0 0 chr4 129263569 129263769 -55024893 + MER105 DNA DNA 5 204 0 1999 119 4 0 chr4 129264440 129264709 -55023953 + AluSq SINE Alu 1 270 -43 201 39 0 0 chr4 129264719 129264745 -55023917 + (CAA)n Simple_repeat Simple_repeat 2 27 0 254 152 172 15 chr4 129266509 129266644 -55022018 - L1ME LINE L1 -315 5806 5637 815 132 16 0 chr4 129266841 129266970 -55021692 - THE1B LTR MaLR -233 131 1 717 236 101 16 chr4 129267004 129267262 -55021400 - L1ME LINE L1 -611 5551 5272 1452 276 78 11 chr4 129267264 129267837 -55020825 - L1ME LINE L1 -837 5309 4698 185 136 45 23 chr4 129267941 129267985 -55020677 + L2 LINE L2 3265 3309 -4 511 251 51 31 chr4 129269786 129269981 -55018681 + MLT2E LTR ERVL 428 626 -2 399 223 74 126 chr4 129269986 129270336 -55018326 + L1MC5 LINE L1 7183 7514 -447 25 75 0 0 chr4 129271184 129271237 -55017425 + AT_rich Low_complexity Low_complexity 1 53 0 858 124 7 22 chr4 129272105 129272242 -55016420 + AluJo SINE Alu 78 212 -100 2351 68 17 0 chr4 129272392 129272687 -55015975 - AluY SINE Alu -11 300 1 645 187 80 7 chr4 129272776 129272926 -55015736 - MIR SINE MIR 0 262 102 7289 147 5 9 chr4 129273517 129274762 -55013900 + L1P LINE L1 1081 2320 -3826 224 39 0 0 chr4 129274763 129274789 -55013873 + (A)n Simple_repeat Simple_repeat 1 26 0 34 72 0 0 chr4 129275092 129275161 -55013501 + AT_rich Low_complexity Low_complexity 1 69 0 2103 75 0 18 chr4 129275249 129275528 -55013134 - AluY SINE Alu 0 311 38 1612 193 91 25 chr4 129275589 129276030 -55012632 + Charlie1b DNA MER1_type 52 521 -2 314 320 131 16 chr4 129276381 129276503 -55012159 - L2 LINE L2 0 3272 3137 495 311 24 48 chr4 129278667 129278873 -55009789 - MIR3 SINE MIR -7 201 1 2389 73 3 0 chr4 129279997 129280297 -55008365 + AluSp SINE Alu 1 301 -12 2150 109 3 0 chr4 129280383 129280668 -55007994 + AluSx SINE Alu 1 286 -26 315 219 18 16 chr4 129281715 129281829 -55006833 + MIR SINE MIR 54 254 -8 1887 110 0 7 chr4 129282272 129282545 -55006117 + AluSg SINE Alu 40 310 0 912 107 0 13 chr4 129283560 129283710 -55004952 - L1PA4 LINE L1 -1 6154 6007 14534 102 9 9 chr4 129283815 129286906 -55001756 + L1PA8 LINE L1 3106 6172 0 419 313 108 42 chr4 129286916 129287204 -55001458 - L2 LINE L2 -167 3146 2840 189 0 0 0 chr4 129287955 129287976 -55000686 + (TA)n Simple_repeat Simple_repeat 1 21 0 944 241 18 22 chr4 129288081 129288305 -55000357 - MER58A DNA MER1_type -1 223 1 315 293 12 12 chr4 129288372 129288454 -55000208 + L2 LINE L2 3208 3289 -24 970 297 122 40 chr4 129288471 129288972 -54999690 - MLT1L LTR MaLR -73 542 1 186 43 0 0 chr4 129289132 129289155 -54999507 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 23 33 0 0 chr4 129289213 129289243 -54999419 + AT_rich Low_complexity Low_complexity 1 30 0 185 81 0 27 chr4 129290183 129290220 -54998442 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 240 267 67 8 chr4 129290423 129290543 -54998119 + L1ME LINE L1 5036 5162 -984 671 280 36 39 chr4 129291179 129291274 -54997388 + L1ME LINE L1 5305 5399 -771 1972 79 0 8 chr4 129291274 129291528 -54997134 + AluY SINE Alu 40 291 -20 671 280 36 39 chr4 129291528 129291768 -54996894 + L1ME LINE L1 5399 5639 -531 779 287 42 17 chr4 129292109 129292346 -54996316 - MIR SINE MIR -15 247 5 270 0 0 0 chr4 129293311 129293341 -54995321 + (CA)n Simple_repeat Simple_repeat 1 30 0 376 250 0 0 chr4 129293800 129293876 -54994786 - AluJ/FRAM SINE Alu -9 293 218 220 130 109 0 chr4 129294975 129295021 -54993641 - L2 LINE L2 0 3313 3263 2172 122 0 3 chr4 129295152 129295455 -54993207 - AluSx SINE Alu -10 302 1 1545 193 42 11 chr4 129296060 129296228 -54992434 - AluJb SINE Alu -18 294 112 2160 87 0 0 chr4 129296228 129296504 -54992158 + AluSc SINE Alu 28 303 -6 1545 193 42 11 chr4 129296504 129296620 -54992042 - AluJb SINE Alu -200 112 1 1017 208 0 44 chr4 129297014 129297240 -54991422 - MER20 DNA MER1_type 0 219 4 411 299 110 43 chr4 129297578 129298599 -54990063 + L1M4 LINE L1 3870 5094 -1052 180 222 37 74 chr4 129298603 129298657 -54990005 + L2 LINE L2 3206 3257 -56 227 282 27 0 chr4 129298696 129298806 -54989856 + L1M4 LINE L1 5100 5212 -934 563 214 32 0 chr4 129299455 129299581 -54989081 - L1ME3A LINE L1 -9 6161 6032 2117 255 95 18 chr4 129299737 129300726 -54987936 - L1ME3A LINE L1 -166 6004 4942 432 274 95 11 chr4 129300747 129300937 -54987725 - L1ME3A LINE L1 -1304 4842 4637 1953 178 37 2 chr4 129300940 129301561 -54987101 - L1M1 LINE L1 -687 5613 4961 7509 30 1 0 chr4 129301561 129303051 -54985611 + L1PA3 LINE L1 4663 6153 -2 1953 178 37 2 chr4 129303051 129303109 -54985553 - L1M1 LINE L1 -1339 4961 4906 19113 108 6 3 chr4 129303132 129306799 -54981863 - L1PA8 LINE L1 -2 6170 2492 194 344 153 6 chr4 129307087 129307250 -54981412 + L2 LINE L2 2295 2481 -833 296 280 160 8 chr4 129307287 129307412 -54981250 + L2 LINE L2 2594 2737 -577 219 69 0 0 chr4 129307548 129307577 -54981085 + (T)n Simple_repeat Simple_repeat 1 29 0 2353 173 75 43 chr4 129307577 129308177 -54980485 - LTR8A LTR ERV1 -98 629 11 385 299 45 30 chr4 129308177 129308311 -54980351 + L2 LINE L2 3137 3272 0 25 0 0 0 chr4 129308434 129308459 -54980203 + AT_rich Low_complexity Low_complexity 1 25 0 361 289 59 40 chr4 129309651 129309702 -54978960 + MIR SINE MIR 20 69 -193 1670 202 5 62 chr4 129309702 129310089 -54978573 - MLT1A1 LTR MaLR 0 365 1 361 289 59 40 chr4 129310089 129310189 -54978473 + MIR SINE MIR 69 174 -88 216 0 0 0 chr4 129310859 129310883 -54977779 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 473 324 188 18 chr4 129311214 129311955 -54976707 + L2 LINE L2 2420 3295 -18 283 208 0 0 chr4 129312079 129312132 -54976530 + L2 LINE L2 3261 3313 0 183 305 48 57 chr4 129312750 129312855 -54975807 + L2 LINE L2 3204 3307 -6 249 375 0 12 chr4 129313015 129313136 -54975526 - MER5A DNA MER1_type -16 173 44 2363 70 0 3 chr4 129313977 129314275 -54974387 + AluY SINE Alu 1 297 -14 514 258 61 42 chr4 129315192 129315401 -54973261 - MIR SINE MIR -49 213 2 494 129 12 0 chr4 129315772 129315857 -54972805 + CT-rich Low_complexity Low_complexity 1 86 0 200 264 19 0 chr4 129315857 129315910 -54972752 + C-rich Low_complexity Low_complexity 6 59 0 204 350 38 0 chr4 129315910 129315990 -54972672 - L2 LINE L2 -2 3270 3188 248 342 18 26 chr4 129316701 129316815 -54971847 - MIR3 SINE MIR -35 173 61 2296 94 0 7 chr4 129317267 129317575 -54971087 - AluSc SINE Alu -3 306 1 376 342 60 10 chr4 129317692 129317891 -54970771 + MIR SINE MIR 54 262 0 2110 99 0 0 chr4 129319714 129320024 -54968638 - AluY SINE Alu 0 310 1 234 297 0 14 chr4 129320071 129320145 -54968517 + L1ME LINE L1 357 429 -5641 2077 277 85 59 chr4 129320173 129321374 -54967288 + L1ME LINE L1 116 1435 -4826 5304 139 18 8 chr4 129321374 129322469 -54966193 + L1PA15 LINE L1 5063 6165 0 2077 277 85 59 chr4 129322469 129323041 -54965621 + L1ME LINE L1 1435 1990 -4271 762 165 47 0 chr4 129323051 129323178 -54965484 + FLAM_A SINE Alu 1 133 0 2184 120 0 0 chr4 129323185 129323485 -54965177 + AluSg SINE Alu 1 300 -10 525 222 75 11 chr4 129324977 129325140 -54963522 - MER20B DNA MER1_type -4 215 38 412 141 0 0 chr4 129326492 129326556 -54962106 - MER92C LTR ERV1 0 554 491 335 244 72 92 chr4 129326584 129326821 -54961841 - MER92B LTR ERV1 -336 218 1 200 156 0 44 chr4 129327185 129327230 -54961432 + A-rich Low_complexity Low_complexity 4 46 0 853 288 43 55 chr4 129327298 129327715 -54960947 + L1MEd LINE L1 332 743 -5376 227 342 26 33 chr4 129327994 129328146 -54960516 + L1M4 LINE L1 4907 5057 -1089 2805 13 0 0 chr4 129328363 129328676 -54959986 - AluYb8 SINE Alu -5 313 1 239 200 0 15 chr4 129328992 129329057 -54959605 + (TATATG)n Simple_repeat Simple_repeat 1 64 0 547 326 18 54 chr4 129329257 129329481 -54959181 + MIR SINE MIR 34 249 -13 1308 281 151 6 chr4 129331203 129331720 -54956942 - L2 LINE L2 -1035 2279 1688 193 372 42 56 chr4 129331871 129332086 -54956576 - L2 LINE L2 -802 2512 2301 22 0 0 0 chr4 129332295 129332317 -54956345 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 129332353 129332381 -54956281 + AT_rich Low_complexity Low_complexity 1 28 0 40 49 0 0 chr4 129332984 129333045 -54955617 + AT_rich Low_complexity Low_complexity 1 61 0 247 250 12 48 chr4 129333265 129333349 -54955313 + L2 LINE L2 2320 2400 -914 270 231 0 0 chr4 129333390 129333442 -54955220 - L2 LINE L2 -4 3309 3258 335 161 26 168 chr4 129333509 129333664 -54954998 - L1ME4a LINE L1 -11 6110 5978 240 196 11 65 chr4 129334451 129334543 -54954119 + (CATATA)n Simple_repeat Simple_repeat 4 90 0 254 279 73 28 chr4 129334697 129334876 -54953786 - L1M4 LINE L1 -797 5349 5163 1043 105 21 0 chr4 129334948 129335091 -54953571 - AluSq/x SINE Alu -167 146 1 12746 207 55 15 chr4 129335125 129340939 -54947723 + L1M1 LINE L1 16 6816 -749 355 157 0 0 chr4 129340943 129340994 -54947668 - MER2 DNA MER2_type -15 330 280 22 35 0 0 chr4 129340994 129341023 -54947639 + AT_rich Low_complexity Low_complexity 1 29 0 810 143 54 0 chr4 129341023 129341170 -54947492 - MER2 DNA MER2_type -135 210 56 1249 297 35 46 chr4 129341606 129342061 -54946601 + LTR16C LTR ERVL 42 491 0 4048 195 40 35 chr4 129343234 129344479 -54944183 - L1MB1 LINE L1 -6 5986 4733 2919 251 54 54 chr4 129344476 129345543 -54943119 - L1MB1 LINE L1 -4811 1080 14 * 21 0 0 0 chr4 129346192 129346213 -54942449 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr4 129347013 129347048 -54941614 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr4 129347314 129347342 -54941320 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 129347403 129347426 -54941236 + AT_rich Low_complexity Low_complexity 1 23 0 240 237 0 34 chr4 129347638 129347697 -54940965 + L3 LINE CR1 692 748 -829 416 265 54 60 chr4 129348239 129348405 -54940257 + L3 LINE CR1 1404 1568 -9 521 258 79 0 chr4 129349359 129349537 -54939125 - L1ME4a LINE L1 0 6121 5930 23 33 0 0 chr4 129349602 129349632 -54939030 + AT_rich Low_complexity Low_complexity 1 30 0 701 224 20 0 chr4 129349698 129349850 -54938812 + Charlie1 DNA MER1_type 59 213 -2548 340 135 0 54 chr4 129349869 129349943 -54938719 + Charlie1 DNA MER1_type 2633 2702 -59 685 216 91 43 chr4 129349945 129350153 -54938509 - L1ME3A LINE L1 -13 6157 5940 302 346 66 7 chr4 129350225 129350361 -54938301 + MIR SINE MIR 23 166 -96 664 169 76 81 chr4 129350443 129350615 -54938047 + MER5A DNA MER1_type 1 171 -18 436 356 70 22 chr4 129350615 129350885 -54937777 - L1ME3A LINE L1 -296 5825 5543 391 217 98 0 chr4 129351388 129351480 -54937182 - MIR SINE MIR -117 145 45 6975 56 8 0 chr4 129351774 129352655 -54936007 + L1PA7 LINE L1 5267 6154 0 569 95 42 0 chr4 129354501 129354596 -54934066 - Tigger6 DNA MER2_type -165 1432 1334 6666 29 5 0 chr4 129354596 129355383 -54933279 + L1PA3 LINE L1 5364 6154 -1 773 184 30 30 chr4 129355418 129355466 -54933196 + Tigger6 DNA MER2_type 1429 1476 -121 2383 88 0 0 chr4 129355466 129355763 -54932899 + AluSg SINE Alu 1 297 -13 773 184 30 30 chr4 129355763 129355882 -54932780 + Tigger6 DNA MER2_type 1475 1596 -1 1809 296 57 21 chr4 129356003 129356968 -54931694 - L1M4c LINE L1 -3036 3390 2391 447 273 229 19 chr4 129357389 129357822 -54930840 - L1M4c LINE L1 -4669 1757 1234 8735 170 33 7 chr4 129357871 129358441 -54930221 - L1PA13 LINE L1 -1 6813 6259 2322 75 13 10 chr4 129358441 129358746 -54929916 + AluY SINE Alu 1 306 -5 8735 170 33 7 chr4 129358746 129360649 -54928013 - L1PA13 LINE L1 -555 6259 4279 788 133 6 0 chr4 129360652 129360804 -54927858 - L1 LINE L1 -1331 4815 4659 * 11299 198 52 10 chr4 129360800 129362199 -54926463 - L1PA13 LINE L1 -2546 4251 2912 2178 70 3 0 chr4 129362199 129362485 -54926177 - L1PA14 LINE L1 -4 6157 5871 11299 198 52 10 chr4 129362485 129365148 -54923514 - L1PA13 LINE L1 -3885 2912 4 337 254 69 86 chr4 129365159 129365374 -54923288 - HAL1 LINE L1 -1332 1175 963 1769 103 26 15 chr4 129365374 129365645 -54923017 - L1PA10 LINE L1 -4 6164 5891 337 254 69 86 chr4 129365645 129365661 -54923001 - HAL1 LINE L1 -1544 963 948 325 256 168 60 chr4 129366218 129366534 -54922128 - L1M4 LINE L1 -3149 2997 2648 27 29 0 0 chr4 129367907 129367941 -54920721 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr4 129368141 129368171 -54920491 + AT_rich Low_complexity Low_complexity 1 30 0 206 269 0 0 chr4 129368328 129368380 -54920282 - MIR3 SINE MIR -42 166 115 509 247 20 0 chr4 129368541 129368687 -54919975 - MER104 DNA Tc2 -3 177 29 237 323 0 0 chr4 129368778 129368843 -54919819 + L1PA13 LINE L1 1194 1258 -5529 23 33 0 0 chr4 129368859 129368889 -54919773 + AT_rich Low_complexity Low_complexity 1 30 0 245 333 91 30 chr4 129369124 129369256 -54919406 + L2 LINE L2 2682 2821 -493 223 321 60 0 chr4 129369400 129369484 -54919178 + L2 LINE L2 2992 3080 -192 481 243 104 14 chr4 129370021 129370165 -54918497 - L2 LINE L2 -2 3311 3155 9594 151 59 44 chr4 129370175 129372764 -54915898 + L1P3 LINE L1 12 2708 -3753 * 44065 39 5 3 chr4 129372759 129378903 -54909759 + L1PA4 LINE L1 1 6155 0 4585 134 5 5 chr4 129378895 129379651 -54909011 + L1P3 LINE L1 2676 3431 -3030 * 7088 98 27 0 chr4 129379751 129380804 -54907858 - L1P LINE L1 -2177 3969 2889 464 306 108 22 chr4 129381262 129381494 -54907168 - MIR SINE MIR -3 259 8 1417 174 91 33 chr4 129381540 129381902 -54906760 + L1M2c LINE L1 2 384 -6405 1669 144 18 11 chr4 129382041 129382325 -54906337 - L1PA16 LINE L1 -1 6165 5880 2638 233 98 56 chr4 129382333 129384009 -54904653 - L1MEc LINE L1 -2667 3548 1827 836 294 78 52 chr4 129384027 129384308 -54904354 - L1MEc LINE L1 -4671 1725 1453 2022 138 10 10 chr4 129384308 129384322 -54904340 - AluSx SINE Alu -1 311 298 189 0 0 0 chr4 129384322 129384343 -54904319 + (TG)n Simple_repeat Simple_repeat 2 22 0 2022 138 10 10 chr4 129384343 129384639 -54904023 - AluSx SINE Alu -13 299 1 836 294 78 52 chr4 129384639 129385143 -54903519 - L1MEc LINE L1 -4943 1453 910 5015 74 6 1 chr4 129385143 129385845 -54902817 + L1PA8 LINE L1 5490 6194 0 836 294 78 52 chr4 129385845 129385972 -54902690 - L1MEc LINE L1 -5486 910 788 616 362 22 31 chr4 129386098 129386515 -54902147 - L1MEc LINE L1 -5817 579 167 307 211 13 13 chr4 129386579 129386655 -54902007 - LTR33A LTR ERVL 0 523 448 229 319 44 44 chr4 129387063 129387176 -54901486 + MIR3 SINE MIR 1 113 -95 1976 223 46 75 chr4 129387177 129387274 -54901388 - MER77 LTR ERV1 -1 604 506 1867 160 134 28 chr4 129387274 129387661 -54901001 - MSTA LTR MaLR 0 428 1 9568 132 19 34 chr4 129387661 129389263 -54899399 - MSTA-int LTR MaLR 0 1580 3 1970 130 143 8 chr4 129389265 129389642 -54899020 - MSTA LTR MaLR 0 428 1 1976 223 46 75 chr4 129389642 129390151 -54898511 - MER77 LTR ERV1 -99 506 12 292 321 92 43 chr4 129390494 129390638 -54898024 + MER91A DNA MER1_type 2 138 -58 2890 6 0 0 chr4 129390638 129390949 -54897713 - AluYa5 SINE Alu 0 311 1 261 0 0 0 chr4 129390953 129390982 -54897680 + (TTA)n Simple_repeat Simple_repeat 2 30 0 292 321 92 43 chr4 129390982 129391016 -54897646 + MER91A DNA MER1_type 140 194 -2 291 190 0 0 chr4 129395255 129395313 -54893349 + (TA)n Simple_repeat Simple_repeat 2 59 0 229 224 0 0 chr4 129395916 129395965 -54892697 + T-rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chr4 129396263 129396288 -54892374 + AT_rich Low_complexity Low_complexity 1 25 0 266 167 0 0 chr4 129396475 129396523 -54892139 - L2 LINE L2 0 3313 3266 2192 107 10 0 chr4 129397165 129397455 -54891207 + AluSp SINE Alu 5 297 -16 180 270 32 16 chr4 129398746 129398809 -54889853 + L2 LINE L2 3153 3216 -97 362 267 81 64 chr4 129399342 129399514 -54889148 - MIR SINE MIR 0 262 88 258 238 143 12 chr4 129400492 129400576 -54888086 - MIR SINE MIR -100 162 68 26 0 0 0 chr4 129402192 129402218 -54886444 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr4 129402874 129402896 -54885766 + AT_rich Low_complexity Low_complexity 1 22 0 270 271 232 26 chr4 129402910 129403065 -54885597 + MIR3 SINE MIR 19 205 -3 192 77 0 0 chr4 129403401 129403427 -54885235 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 590 307 49 47 chr4 129403578 129404133 -54884529 - L1MC/D LINE L1 -582 5584 5266 185 398 10 0 chr4 129404405 129404503 -54884159 - L3b LINE CR1 -116 1467 1369 2233 122 37 3 chr4 129404763 129405115 -54883547 - THE1B LTR MaLR 0 364 1 8140 153 66 21 chr4 129408984 129409416 -54879246 - L1MA6 LINE L1 -7 6293 5882 1882 131 37 55 chr4 129409416 129409798 -54878864 + THE1C LTR MaLR 1 375 0 8140 153 66 21 chr4 129409798 129411025 -54877637 - L1MA6 LINE L1 -418 5882 4475 2432 78 0 3 chr4 129411025 129411332 -54877330 + AluY SINE Alu 1 306 -5 8140 153 66 21 chr4 129411332 129412138 -54876524 - L1MA6 LINE L1 -1825 4475 3707 859 203 17 8 chr4 129412146 129412383 -54876279 + L1ME2 LINE L1 4165 4403 -1743 * 1920 227 65 38 chr4 129412366 129413671 -54874991 + L1ME2 LINE L1 4744 6124 -40 184 250 0 0 chr4 129413801 129413833 -54874829 - L2 LINE L2 -15 3257 3226 1752 170 0 24 chr4 129413865 129414154 -54874508 - AluJo SINE Alu -30 282 1 526 290 57 17 chr4 129414194 129414370 -54874292 - MIR SINE MIR -70 192 10 744 221 47 11 chr4 129414538 129414728 -54873934 - MIR SINE MIR 0 262 66 255 103 0 0 chr4 129416731 129416770 -54871892 + (TC)n Simple_repeat Simple_repeat 2 40 0 535 197 212 8 chr4 129417094 129417226 -54871436 - MLT1D LTR MaLR 0 505 347 21 0 0 0 chr4 129417670 129417691 -54870971 + AT_rich Low_complexity Low_complexity 1 21 0 515 216 79 53 chr4 129417984 129418174 -54870488 - L2 LINE L2 -4 3309 3115 651 156 1 35 chr4 129418176 129418885 -54869777 + (TA)n Simple_repeat Simple_repeat 1 685 0 2115 282 93 7 chr4 129418886 129419731 -54868931 - L2 LINE L2 -134 3179 2272 399 206 59 81 chr4 129420039 129420175 -54868487 + MIR SINE MIR 97 229 -33 22 0 0 0 chr4 129421837 129421859 -54866803 + AT_rich Low_complexity Low_complexity 1 22 0 234 284 25 25 chr4 129421983 129422064 -54866598 - MER91B DNA MER1_type -47 143 63 205 149 21 21 chr4 129423044 129423091 -54865571 + T-rich Low_complexity Low_complexity 4 50 0 1380 54 0 27 chr4 129423092 129423276 -54865386 - L1PA5 LINE L1 0 6154 5976 312 272 88 40 chr4 129423306 129423431 -54865231 + L2 LINE L2 3137 3267 -5 1313 111 84 0 chr4 129425447 129425672 -54862990 - Tigger3(Golem) DNA MER2_type -599 2430 2187 2015 149 21 15 chr4 129427086 129427421 -54861241 - MER1B DNA MER1_type 0 337 1 246 32 0 0 chr4 129427462 129427493 -54861169 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 974 299 71 32 chr4 129427734 129428367 -54860295 + L1MC4a LINE L1 5257 5914 -1894 216 246 14 14 chr4 129428387 129428456 -54860206 + (TA)n Simple_repeat Simple_repeat 2 70 0 222 226 0 0 chr4 129429244 129429297 -54859365 + T-rich Low_complexity Low_complexity 1 53 0 32 75 0 0 chr4 129429454 129429521 -54859141 + AT_rich Low_complexity Low_complexity 1 67 0 226 381 63 8 chr4 129430302 129430428 -54858234 - MIR SINE MIR -65 197 65 776 298 59 38 chr4 129431784 129432207 -54856455 - MLT1H LTR MaLR -46 503 72 227 236 45 22 chr4 129432248 129432337 -54856325 - MLT1H-int LTR MaLR -29 1342 1252 272 260 173 74 chr4 129433699 129433930 -54854732 - L2 LINE L2 0 3313 3060 2964 139 54 23 chr4 129434274 129434833 -54853829 + L1PB4 LINE L1 5581 6156 0 2424 86 0 0 chr4 129437153 129437455 -54851207 + AluY SINE Alu 1 302 -9 1476 68 0 0 chr4 129437733 129437910 -54850752 + AluY SINE Alu 6 182 -129 223 254 333 0 chr4 129438311 129438449 -54850213 - MIR SINE MIR -4 258 75 1432 96 64 14 chr4 129439578 129439797 -54848865 + MER30 DNA MER1_type 1 230 0 247 352 0 14 chr4 129440662 129440733 -54847929 - L2 LINE L2 -4 3268 3199 1908 169 69 42 chr4 129441017 129441450 -54847212 + MER41B LTR ERV1 162 606 -29 2207 112 3 0 chr4 129441548 129441860 -54846802 + L1PA16 LINE L1 5844 6156 -10 26 30 0 0 chr4 129441860 129441893 -54846769 + AT_rich Low_complexity Low_complexity 1 33 0 1753 260 97 9 chr4 129441922 129442580 -54846082 + L1MC4a LINE L1 5171 5374 -772 2436 49 3 0 chr4 129442825 129443110 -54845552 + AluSc SINE Alu 1 286 -23 368 281 0 0 chr4 129444243 129444325 -54844337 + MIR SINE MIR 10 91 -171 205 318 45 11 chr4 129444608 129444696 -54843966 - L2 LINE L2 -1 3312 3222 213 65 0 0 chr4 129446208 129446239 -54842423 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 215 256 124 83 chr4 129447292 129447413 -54841249 - L2 LINE L2 -3 3310 3185 374 229 42 21 chr4 129447470 129447566 -54841096 + MIR SINE MIR 163 260 -2 784 276 49 16 chr4 129448122 129448365 -54840297 + MIR SINE MIR 2 252 -10 1852 195 92 0 chr4 129449374 129449810 -54838852 - L1M4 LINE L1 -941 5205 4730 2638 231 33 8 chr4 129449831 129450007 -54838655 - L1M4 LINE L1 -1641 4505 4335 6877 69 0 5 chr4 129450007 129451337 -54837325 - L1PA7 LINE L1 0 6154 4834 2638 231 33 8 chr4 129451337 129451917 -54836745 - L1M4 LINE L1 -1811 4335 3730 1920 150 20 3 chr4 129451929 129452223 -54836439 - AluJb SINE Alu -13 299 1 1366 185 11 35 chr4 129452248 129452534 -54836128 - AluJo SINE Alu 0 312 34 1063 220 8 4 chr4 129452538 129452779 -54835883 - L1M4 LINE L1 -2451 3695 3454 868 266 94 39 chr4 129452768 129453152 -54835510 - L1MEc LINE L1 -5956 440 36 * 466 209 0 12 chr4 129453494 129453580 -54835082 - MIR SINE MIR -169 93 9 205 216 0 0 chr4 129453683 129453720 -54834942 + (TA)n Simple_repeat Simple_repeat 2 38 0 6308 92 18 3 chr4 129453995 129455512 -54833150 - L1PA13 LINE L1 0 6163 4628 1177 283 81 18 chr4 129455516 129456333 -54832329 - L1M4 LINE L1 -1674 4472 2898 809 182 23 68 chr4 129456339 129456515 -54832147 - FRAM SINE Alu -11 165 1 368 262 43 43 chr4 129456515 129456748 -54831914 - L1M4 LINE L1 -3269 2877 2645 2171 116 16 0 chr4 129456809 129457112 -54831550 - AluSx SINE Alu -2 310 3 2092 119 132 26 chr4 129458278 129458569 -54830093 + MSTA LTR MaLR 1 344 -84 4684 60 9 0 chr4 129458569 129459151 -54829511 - LTR14C LTR ERVK 0 587 1 2092 119 132 26 chr4 129459151 129459246 -54829416 + MSTA LTR MaLR 344 428 0 8606 156 13 35 chr4 129459248 129460860 -54827802 + MSTA-int LTR MaLR 3 1579 -1 1989 149 131 11 chr4 129460861 129461243 -54827419 + MSTA LTR MaLR 1 428 0 32 0 0 0 chr4 129461458 129461490 -54827172 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr4 129461621 129461644 -54827018 + AT_rich Low_complexity Low_complexity 1 23 0 303 231 77 0 chr4 129462384 129462462 -54826200 + L2 LINE L2 3229 3312 -1 26 0 0 0 chr4 129463010 129463036 -54825626 + AT_rich Low_complexity Low_complexity 1 26 0 359 309 104 55 chr4 129463742 129464049 -54824613 - L2 LINE L2 -4 3309 2988 828 191 14 43 chr4 129464279 129464488 -54824174 + MER3 DNA MER1_type 1 203 -6 1585 208 4 0 chr4 129465013 129465292 -54823370 + AluJo SINE Alu 3 282 -30 550 245 49 0 chr4 129466686 129466829 -54821833 + L1PBa LINE L1 48 197 -6666 * 1575 183 20 48 chr4 129466827 129467287 -54821375 + L1PBa LINE L1 1396 1842 -5021 574 245 49 0 chr4 129467841 129467984 -54820678 + L1PBa LINE L1 48 197 -6666 * 14704 214 18 11 chr4 129467982 129470403 -54818259 + L1PBa LINE L1 1396 3922 -2940 201 74 0 0 chr4 129470403 129470430 -54818232 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 14704 214 18 11 chr4 129470430 129472625 -54816037 + L1PBa LINE L1 3922 6100 -762 2275 85 9 3 chr4 129472625 129472943 -54815719 + L1PB1 LINE L1 5333 5652 -499 2431 114 11 3 chr4 129472956 129473317 -54815345 + L1PB1 LINE L1 5783 6146 -5 25 31 0 0 chr4 129473318 129473350 -54815312 + AT_rich Low_complexity Low_complexity 1 32 0 1910 145 0 3 chr4 129473357 129473654 -54815008 + AluSx SINE Alu 2 297 -15 318 265 88 72 chr4 129474030 129474211 -54814451 - L1MC4 LINE L1 0 8042 7859 464 317 167 33 chr4 129474353 129474773 -54813889 - L1ME3 LINE L1 -216 5946 5471 248 297 10 0 chr4 129474773 129474874 -54813788 - L1P4 LINE L1 -695 5468 5367 341 259 159 40 chr4 129475076 129475277 -54813385 - L1ME3 LINE L1 -1127 5019 4795 881 285 9 0 chr4 129475512 129475733 -54812929 + MER58A DNA MER1_type 2 224 0 1078 290 86 18 chr4 129475848 129476520 -54812142 + L1M4 LINE L1 2267 2984 -3162 505 244 23 8 chr4 129476511 129476642 -54812020 + L1MDa LINE L1 18 150 -6390 * 580 252 52 81 chr4 129476658 129477039 -54811623 + L1M4 LINE L1 4964 5333 -813 2777 253 169 19 chr4 129477040 129477940 -54810722 + L1M3c LINE L1 11 1045 -5096 2497 246 40 9 chr4 129477965 129478773 -54809889 + L1MDa LINE L1 1222 2369 -4172 6551 217 53 59 chr4 129478776 129480364 -54808298 + L1M2a LINE L1 2 1580 -5588 5192 224 49 47 chr4 129480469 129482877 -54805785 + L1M2a LINE L1 1936 4348 -2819 2079 129 10 0 chr4 129482877 129483180 -54805482 + AluSx SINE Alu 1 306 -6 5192 224 49 47 chr4 129483180 129483398 -54805264 + L1M2a LINE L1 4348 4564 -2603 702 61 8 53 chr4 129483977 129484109 -54804553 + (TG)n Simple_repeat Simple_repeat 2 127 0 329 256 212 15 chr4 129484355 129484492 -54804170 - MIR3 SINE MIR -25 183 20 244 244 124 0 chr4 129485047 129485146 -54803516 - MIR SINE MIR -68 140 37 212 291 18 14 chr4 129485615 129485692 -54802970 + MIR SINE MIR 75 152 -63 211 341 23 0 chr4 129486192 129486280 -54802382 + C-rich Low_complexity Low_complexity 6 95 0 306 333 86 31 chr4 129488086 129488248 -54800414 + L3b LINE CR1 1345 1515 -68 632 229 159 6 chr4 129489272 129489429 -54799233 + MER5A DNA MER1_type 9 189 0 1966 132 0 0 chr4 129489479 129489774 -54798888 - AluSx SINE Alu -17 295 1 254 226 75 0 chr4 129489853 129489906 -54798756 - MIR SINE MIR -98 164 108 682 231 89 12 chr4 129490179 129490348 -54798314 - MIR SINE MIR 0 262 81 23 0 0 0 chr4 129491339 129491362 -54797300 + AT_rich Low_complexity Low_complexity 1 23 0 266 352 102 0 chr4 129491768 129491876 -54796786 + L2 LINE L2 3116 3234 -38 252 298 0 53 chr4 129493059 129493153 -54795509 - MIR SINE MIR -109 153 65 671 243 63 26 chr4 129494379 129494568 -54794094 + MIR SINE MIR 44 239 -23 320 278 71 53 chr4 129494907 129495076 -54793586 + MIR SINE MIR 58 229 -33 399 260 113 21 chr4 129495427 129495570 -54793092 + MIR SINE MIR 35 191 -61 351 213 131 94 chr4 129496233 129496266 -54792396 + MIR SINE MIR 97 127 -135 1395 184 56 14 chr4 129496266 129496554 -54792108 + AluJo SINE Alu 1 300 -12 351 213 131 94 chr4 129496554 129496680 -54791982 + MIR SINE MIR 127 262 0 216 0 0 0 chr4 129496945 129496969 -54791693 + (CA)n Simple_repeat Simple_repeat 2 25 0 679 299 36 5 chr4 129497051 129497245 -54791417 - MIR SINE MIR -4 258 59 201 286 0 0 chr4 129500835 129500884 -54787778 + (CG)n Simple_repeat Simple_repeat 1 49 0 293 187 13 0 chr4 129501016 129501091 -54787571 + CT-rich Low_complexity Low_complexity 2 77 0 309 68 0 0 chr4 129501412 129501456 -54787206 + (TG)n Simple_repeat Simple_repeat 2 45 0 978 279 55 50 chr4 129502553 129502969 -54785693 - L2 LINE L2 -2 3311 2894 2199 116 7 0 chr4 129503066 129503376 -54785286 - AluSx SINE Alu 0 312 1 470 249 54 97 chr4 129503782 129503831 -54784831 - MER5B DNA MER1_type 0 178 128 2040 136 0 0 chr4 129503831 129504141 -54784521 - AluSx SINE Alu -2 310 1 470 249 54 97 chr4 129504141 129504276 -54784386 - MER5B DNA MER1_type -50 128 2 911 261 31 43 chr4 129504755 129505012 -54783650 + MIR SINE MIR 9 262 0 21 0 0 0 chr4 129505208 129505229 -54783433 + AT_rich Low_complexity Low_complexity 1 21 0 255 311 14 0 chr4 129506898 129506972 -54781690 - MIR SINE MIR -90 118 44 434 325 52 83 chr4 129507628 129507880 -54780782 - L2 LINE L2 0 3272 3029 496 341 80 50 chr4 129508626 129509424 -54779238 + L2 LINE L2 2380 3220 -52 536 328 71 5 chr4 129510535 129510733 -54777929 - MIR SINE MIR -18 244 34 1074 267 98 0 chr4 129511978 129512244 -54776418 + MER69 DNA AcHobo 1 292 -2234 687 25 0 0 chr4 129512247 129512328 -54776334 + (TTCC)n Simple_repeat Simple_repeat 4 84 0 1751 119 35 48 chr4 129512341 129512651 -54776011 - AluSq SINE Alu -7 306 1 1457 234 96 18 chr4 129512651 129513035 -54775627 + MER69 DNA AcHobo 281 694 -532 1331 197 123 11 chr4 129513072 129513447 -54775215 + MER69 DNA AcHobo 1659 2075 -451 821 216 12 12 chr4 129513447 129513609 -54775053 - FRAM SINE Alu -14 162 1 186 43 0 0 chr4 129513647 129513670 -54774992 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1904 117 4 11 chr4 129513676 129513957 -54774705 - AluSg SINE Alu -31 279 1 1572 189 48 33 chr4 129513963 129514382 -54774280 + MER69 DNA AcHobo 2102 2526 0 2164 89 26 0 chr4 129514397 129514700 -54773962 - AluY SINE Alu 0 311 1 207 139 0 0 chr4 129514729 129514765 -54773897 + (TAA)n Simple_repeat Simple_repeat 2 37 0 588 238 125 6 chr4 129514771 129514939 -54773723 - MIR SINE MIR -11 251 64 247 318 25 33 chr4 129515000 129515121 -54773541 - MIR SINE MIR -67 141 34 2119 93 3 7 chr4 129515843 129516144 -54772518 - AluSx SINE Alu -12 300 1 359 180 0 0 chr4 129516148 129516209 -54772453 + MLT1C LTR MaLR 407 467 0 391 160 53 43 chr4 129516359 129516453 -54772209 + Alu SINE Alu 237 302 0 1916 132 84 0 chr4 129516455 129516766 -54771896 - MLT1B LTR MaLR -52 338 2 911 261 91 27 chr4 129517163 129517536 -54771126 - L1MC4a LINE L1 -335 5831 5709 498 216 20 0 chr4 129517857 129517959 -54770703 - MLT1E LTR MaLR 0 593 490 1505 145 46 0 chr4 129518057 129518298 -54770364 - AluSx SINE Alu -60 252 1 267 246 0 16 chr4 129518364 129518425 -54770237 + L2 LINE L2 3205 3264 -8 3229 253 124 41 chr4 129519140 129519656 -54769006 - L2 LINE L2 0 3313 2841 2278 117 3 0 chr4 129519656 129519965 -54768697 - AluSx SINE Alu -2 310 1 3229 253 124 41 chr4 129519965 129520955 -54767707 - L2 LINE L2 -472 2841 1681 2230 179 39 15 chr4 129521091 129521138 -54767524 + MSTB LTR MaLR 6 50 -376 2165 138 0 6 chr4 129521138 129521450 -54767212 + AluSg SINE Alu 1 310 0 2230 179 39 15 chr4 129521450 129521811 -54766851 + MSTB LTR MaLR 50 424 -2 9931 177 17 2 chr4 129521813 129523438 -54765224 + MSTB-int LTR MaLR 2 1651 0 2512 189 17 7 chr4 129523439 129523858 -54764804 + MSTB LTR MaLR 2 424 -2 935 256 23 5 chr4 129524031 129524250 -54764412 + MIR SINE MIR 32 254 -8 408 341 45 18 chr4 129524274 129524494 -54764168 - L2 LINE L2 -449 2865 2640 380 298 74 50 chr4 129524465 129524707 -54763955 + MIR SINE MIR 15 262 0 * 520 244 96 13 chr4 129526259 129526415 -54762247 - MIR SINE MIR -17 245 77 616 195 25 3 chr4 129526417 129526569 -54762093 - MLT1A2 LTR MaLR -2 386 232 240 184 0 0 chr4 129526888 129526937 -54761725 + GA-rich Low_complexity Low_complexity 1 49 0 1202 154 0 48 chr4 129527487 129527695 -54760967 + AluJb SINE Alu 83 280 -32 183 42 0 0 chr4 129527697 129527721 -54760941 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 21 71 0 0 chr4 129527926 129527968 -54760694 + AT_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr4 129528133 129528159 -54760503 + AT_rich Low_complexity Low_complexity 1 26 0 6993 37 0 0 chr4 129528159 129528975 -54759687 - L1PA5 LINE L1 0 6154 5339 2100 128 0 3 chr4 129529096 129529402 -54759260 - AluSc SINE Alu 0 309 5 226 255 0 0 chr4 129529524 129529571 -54759091 + L2 LINE L2 3254 3300 -13 189 0 0 0 chr4 129530483 129530504 -54758158 + (A)n Simple_repeat Simple_repeat 1 21 0 345 314 0 10 chr4 129530545 129530647 -54758015 - MIR SINE MIR -160 102 2 180 326 20 0 chr4 129531160 129531209 -54757453 - L3 LINE CR1 -126 1451 1402 23 0 0 0 chr4 129531227 129531250 -54757412 + AT_rich Low_complexity Low_complexity 1 23 0 301 147 0 93 chr4 129531293 129531368 -54757294 - Tigger2 DNA MER2_type -2633 85 18 213 333 0 0 chr4 129531466 129531529 -54757133 - L3 LINE CR1 -375 1202 1140 182 333 183 21 chr4 129533392 129533578 -54755084 + L2 LINE L2 2873 3088 -225 968 207 0 0 chr4 129533586 129533750 -54754912 - FRAM SINE Alu -2 164 1 424 299 50 40 chr4 129535462 129535663 -54752999 + MIR SINE MIR 29 231 -31 1351 213 33 0 chr4 129536502 129536774 -54751888 + MER58B DNA MER1_type 57 337 -4 235 264 91 27 chr4 129536890 129537000 -54751662 - MER117 DNA MER1_type -76 121 5 259 279 318 8 chr4 129537630 129537759 -54750903 - MER91A DNA MER1_type 0 196 28 285 259 0 0 chr4 129538032 129538113 -54750549 + T-rich Low_complexity Low_complexity 1 81 0 2502 73 0 3 chr4 129538580 129538883 -54749779 + AluY SINE Alu 1 302 -9 1390 181 147 11 chr4 129539410 129539676 -54748986 - AluSx SINE Alu 0 302 1 280 159 48 32 chr4 129540112 129540175 -54748487 + MIR3 SINE MIR 125 188 -20 210 200 22 0 chr4 129541265 129541310 -54747352 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 1703 168 0 31 chr4 129542740 129543061 -54745601 + AluJb SINE Alu 1 311 -1 318 260 62 70 chr4 129544262 129544464 -54744198 + MIR SINE MIR 4 203 -59 201 286 0 16 chr4 129546110 129546173 -54742489 + GA-rich Low_complexity Low_complexity 4 65 0 23 0 0 0 chr4 129546575 129546598 -54742064 + AT_rich Low_complexity Low_complexity 1 23 0 24 77 0 0 chr4 129546920 129546972 -54741690 + AT_rich Low_complexity Low_complexity 1 52 0 497 364 9 5 chr4 129547347 129547564 -54741098 + L2 LINE L2 2697 2914 -400 839 239 99 35 chr4 129547565 129547849 -54740813 - L2 LINE L2 -900 2414 2113 859 315 18 7 chr4 129547871 129548144 -54740518 - LTR16C LTR ERVL -30 461 186 484 189 182 8 chr4 129548271 129548403 -54740259 - L2 LINE L2 -1253 2061 1907 2101 217 72 36 chr4 129548873 129549335 -54739327 + MLT2B1 LTR ERVL 1 484 -36 375 23 0 0 chr4 129549335 129549379 -54739283 + (CA)n Simple_repeat Simple_repeat 2 45 0 2101 217 72 36 chr4 129549379 129549418 -54739244 + MLT2B1 LTR ERVL 484 520 0 2645 234 49 15 chr4 129549419 129550034 -54738628 + ERVL-B1 LTR ERVL 2 637 -5127 11734 198 19 4 chr4 129550054 129552183 -54736479 + ERVL-B1 LTR ERVL 738 2898 -2866 5509 157 15 8 chr4 129552186 129553076 -54735586 + ERVL-B1 LTR ERVL 3550 4445 -1319 1196 164 0 30 chr4 129553076 129553277 -54735385 + AluJb SINE Alu 112 306 -6 236 180 0 0 chr4 129553290 129553340 -54735322 + L1ME2 LINE L1 5123 5172 -974 1165 231 101 15 chr4 129553359 129554057 -54734605 + L1ME2 LINE L1 5292 6333 -1 2266 23 0 4 chr4 129554168 129554427 -54734235 - AluY SINE Alu -4 307 50 3245 156 9 34 chr4 129554665 129555249 -54733413 + L1MA6 LINE L1 5726 6294 -6 254 283 257 13 chr4 129558148 129558300 -54730362 - MER5A DNA MER1_type 0 189 1 396 289 74 7 chr4 129558871 129559006 -54729656 + MIR3 SINE MIR 11 154 -54 4009 175 34 69 chr4 129559681 129561286 -54727376 - THE1B-int LTR MaLR -135 1445 6 5385 96 1 0 chr4 129560231 129560937 -54727725 + THE1-int LTR MaLR 369 1075 -505 1251 97 10 46 chr4 129561291 129561486 -54727176 - THE1B LTR MaLR 0 364 177 1878 98 0 4 chr4 129561486 129561732 -54726930 - AluSx SINE Alu -9 303 59 28825 30 1 0 chr4 129561832 129566011 -54722651 + L1PA4 LINE L1 1973 6154 -1 4496 144 30 10 chr4 129566005 129566836 -54721826 + L1 LINE L1 3562 4409 -1737 * 363 274 183 13 chr4 129566968 129567121 -54721541 + L2 LINE L2 2317 2495 -819 1057 288 137 18 chr4 129567127 129567676 -54720986 + L2 LINE L2 2707 3313 0 287 333 43 26 chr4 129568107 129568224 -54720438 + L2 LINE L2 3173 3291 -22 450 212 59 42 chr4 129568356 129568474 -54720188 + MLT1K LTR MaLR 129 248 -340 267 227 160 0 chr4 129569060 129569135 -54719527 + MER33 DNA MER1_type 1 87 -237 1974 137 30 10 chr4 129569355 129569654 -54719008 + AluSx SINE Alu 1 305 -7 301 275 0 44 chr4 129569727 129569818 -54718844 + MER5B DNA MER1_type 1 87 -91 649 87 0 0 chr4 129569847 129569939 -54718723 - L1MA9 LINE L1 -5 6307 6216 1077 235 165 77 chr4 129570093 129570573 -54718089 - MLT1E2 LTR MaLR -2 624 131 6362 218 78 37 chr4 129570630 129571277 -54717385 - L1ME2 LINE L1 -13 6151 5532 1942 146 21 0 chr4 129571277 129571565 -54717097 - AluSx SINE Alu -16 296 3 6362 218 78 37 chr4 129571565 129571693 -54716969 - L1ME2 LINE L1 -632 5532 5411 1908 138 23 26 chr4 129571693 129571997 -54716665 - L1PA16 LINE L1 -9 6157 5855 6362 218 78 37 chr4 129571997 129573460 -54715202 - L1ME2 LINE L1 -753 5411 4010 1847 171 43 54 chr4 129573460 129573852 -54714810 + MLT1B LTR MaLR 2 389 -1 6362 218 78 37 chr4 129573852 129573970 -54714692 - L1ME2 LINE L1 -2154 4010 3898 2761 101 3 16 chr4 129573970 129574338 -54714324 - THE1B LTR MaLR -1 363 1 6362 218 78 37 chr4 129574338 129574351 -54714311 - L1ME2 LINE L1 -2266 3898 3887 2716 39 0 0 chr4 129574351 129574659 -54714003 - AluY SINE Alu -3 308 1 6362 218 78 37 chr4 129574659 129574916 -54713746 - L1ME2 LINE L1 -2277 3887 3642 1636 206 10 3 chr4 129574916 129575212 -54713450 + AluJo SINE Alu 1 298 -14 6362 218 78 37 chr4 129575212 129575274 -54713388 - L1ME2 LINE L1 -2522 3642 3330 1907 172 12 9 chr4 129575352 129575689 -54712973 - L1MB7 LINE L1 -11 6453 6116 3572 159 11 3 chr4 129575761 129576585 -54712077 - L1MB7 LINE L1 -324 6134 5307 32 0 0 0 chr4 129578649 129578681 -54709981 + GC_rich Low_complexity Low_complexity 1 32 0 1848 233 100 36 chr4 129579023 129579423 -54709239 - L1MB7 LINE L1 -946 5480 5107 369 0 0 0 chr4 129579423 129579464 -54709198 + (TG)n Simple_repeat Simple_repeat 2 42 0 1848 233 100 36 chr4 129579464 129580146 -54708516 - L1MB7 LINE L1 -1319 5107 1047 1969 151 10 0 chr4 129580259 129580564 -54708098 - AluJo SINE Alu -4 308 1 400 155 17 0 chr4 129581057 129581115 -54707547 + AluJ/FLAM SINE Alu 2 60 -252 1346 202 16 8 chr4 129581265 129581517 -54707145 + MLT1E3 LTR MaLR 371 624 0 2393 37 0 0 chr4 129581759 129582028 -54706634 - AluY SINE Alu -7 304 36 2209 108 0 0 chr4 129582039 129582325 -54706337 - AluSg SINE Alu -24 286 1 1154 145 26 0 chr4 129582325 129582518 -54706144 - Tigger2 DNA MER2_type -2520 198 1 427 140 187 47 chr4 129582609 129582716 -54705946 + MER21B LTR ERV1 329 450 -413 477 186 29 20 chr4 129582854 129582956 -54705706 + L1M2 LINE L1 466 568 -6921 1463 266 25 23 chr4 129583235 129583255 -54705407 + L1M3e LINE L1 1954 1972 -5593 1393 162 37 57 chr4 129583255 129583552 -54705110 - AluJo SINE Alu -21 291 1 1463 266 25 23 chr4 129583552 129584015 -54704647 + L1M3e LINE L1 1972 2438 -5127 * 2523 224 35 11 chr4 129584009 129584787 -54703875 + L1M2 LINE L1 720 1598 -5968 1658 150 179 50 chr4 129585718 129585756 -54702906 - MSTA LTR MaLR 0 428 396 1817 122 87 3 chr4 129585756 129586044 -54702618 + AluSx SINE Alu 1 312 0 1658 150 179 50 chr4 129586044 129586384 -54702278 - MSTA LTR MaLR -32 396 1 276 339 55 12 chr4 129587187 129587352 -54701310 - L3 LINE CR1 -340 1237 1066 581 188 27 27 chr4 129587487 129587636 -54701026 - L1MEc LINE L1 -5915 481 333 364 292 71 32 chr4 129587639 129587793 -54700869 - MIR SINE MIR -6 256 97 27 0 0 0 chr4 129587863 129587890 -54700772 + AT_rich Low_complexity Low_complexity 1 27 0 418 254 18 0 chr4 129588583 129588693 -54699969 - L1ME3 LINE L1 -3 6159 6048 383 218 53 27 chr4 129588766 129588889 -54699773 - MER5A DNA MER1_type 0 189 1 22 0 0 0 chr4 129588961 129588983 -54699679 + AT_rich Low_complexity Low_complexity 1 22 0 568 185 0 19 chr4 129588992 129589100 -54699562 - U6 snRNA snRNA -1 106 1 301 113 0 19 chr4 129589542 129589595 -54699067 + L1ME4a LINE L1 6068 6119 -2 2140 118 10 0 chr4 129589712 129590001 -54698661 - AluSx SINE Alu -20 292 1 636 241 96 0 chr4 129590783 129590949 -54697713 + MIR SINE MIR 74 255 -7 1925 140 3 3 chr4 129591153 129591446 -54697216 + AluJb SINE Alu 10 302 -10 322 352 21 52 chr4 129591539 129591732 -54696930 + L2 LINE L2 2895 3081 -191 328 171 219 19 chr4 129591939 129592044 -54696618 + L2 LINE L2 3187 3312 -1 2222 129 0 0 chr4 129592272 129592581 -54696081 - AluSx SINE Alu -3 309 1 1145 108 59 0 chr4 129593224 129593427 -54695235 + Charlie5 DNA MER1_type 2407 2621 0 585 246 95 64 chr4 129593569 129593833 -54694829 + L2 LINE L2 1118 1389 -1925 305 277 36 18 chr4 129593857 129593969 -54694693 - L1MC4 LINE L1 -9 8033 7920 349 247 0 0 chr4 129594082 129594171 -54694491 + L1MC5 LINE L1 7696 7784 -177 668 346 99 17 chr4 129594173 129594809 -54693853 + L1MC4 LINE L1 7220 7907 -135 299 327 80 0 chr4 129595002 129595115 -54693547 + L2 LINE L2 3147 3268 -4 2149 103 0 10 chr4 129595491 129595782 -54692880 + AluSg SINE Alu 1 288 -22 1741 108 21 0 chr4 129596497 129596738 -54691924 - AluSg/x SINE Alu -1 311 66 308 215 28 8 chr4 129597793 129597896 -54690766 - MER58A DNA MER1_type -38 186 1 363 307 40 0 chr4 129597912 129598013 -54690649 - L2 LINE L2 -628 2686 2582 631 246 95 0 chr4 129598021 129598200 -54690462 - L2 LINE L2 -1135 2179 1984 4807 166 43 29 chr4 129598201 129599173 -54689489 + L1MA9 LINE L1 5289 6274 -38 966 217 92 15 chr4 129599189 129599461 -54689201 - L2 LINE L2 -1317 1997 1705 295 167 83 111 chr4 129599496 129599604 -54689058 - L2 LINE L2 -70 3243 3139 * 377 343 106 23 chr4 129599591 129599987 -54688675 + L2 LINE L2 2282 2710 -604 327 239 231 23 chr4 129600863 129600993 -54687669 - MER5B DNA MER1_type 0 178 22 500 213 92 23 chr4 129601197 129601371 -54687291 - MLT1F LTR MaLR -13 529 344 206 313 45 80 chr4 129654145 129654321 -54634341 + MIR SINE MIR 18 187 -75 335 321 62 25 chr4 129654837 129654999 -54633663 - MIR SINE MIR -89 173 6 213 39 0 0 chr4 129655322 129655348 -54633314 + (GA)n Simple_repeat Simple_repeat 2 27 0 245 148 0 37 chr4 129656854 129656908 -54631754 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 675 125 9 0 chr4 129656966 129657078 -54631584 - L1MA6 LINE L1 -2 6298 6186 4922 66 17 2 chr4 129657078 129658186 -54630476 - MER11A LTR ERVK 0 1266 1 951 186 12 0 chr4 129658186 129658358 -54630304 - L1MA6 LINE L1 -109 6191 6018 274 93 74 19 chr4 129658350 129658404 -54630258 + L1MA6 LINE L1 5943 5999 -301 * 216 103 0 26 chr4 129659734 129659773 -54628889 - L2 LINE L2 -2 3311 3274 2033 115 69 0 chr4 129660787 129661075 -54627587 - AluSq SINE Alu -5 308 1 225 83 0 0 chr4 129661098 129661134 -54627528 + (TTTTA)n Simple_repeat Simple_repeat 5 40 0 209 364 86 7 chr4 129661427 129661567 -54627095 - L3b LINE CR1 -11 1572 1422 519 319 122 24 chr4 129663811 129664099 -54624563 + L3 LINE CR1 1248 1563 -14 234 0 0 0 chr4 129664910 129664936 -54623726 + (TG)n Simple_repeat Simple_repeat 2 27 0 2151 110 7 3 chr4 129665433 129665741 -54622921 - AluSg SINE Alu 0 310 2 688 253 11 22 chr4 129666164 129666342 -54622320 - MLT1G1 LTR MaLR -6 584 409 939 146 22 22 chr4 129666345 129666523 -54622139 + L1MA9 LINE L1 6099 6276 -36 1065 281 66 51 chr4 129666523 129666933 -54621729 - MLT1G1 LTR MaLR -179 416 1 24 0 0 0 chr4 129667340 129667364 -54621298 + AT_rich Low_complexity Low_complexity 1 24 0 451 290 114 12 chr4 129667703 129667894 -54620768 - MLT1L LTR MaLR -309 306 83 706 230 8 117 chr4 129667894 129668066 -54620596 + MER58A DNA MER1_type 1 139 -2281 198 0 0 0 chr4 129668066 129668088 -54620574 + (TTTAG)n Simple_repeat Simple_repeat 4 25 0 706 230 8 117 chr4 129668088 129668163 -54620499 + MER58A DNA MER1_type 139 221 -3 451 290 114 12 chr4 129668163 129668216 -54620446 - MLT1L LTR MaLR -532 83 37 21 36 0 0 chr4 129670243 129670271 -54618391 + AT_rich Low_complexity Low_complexity 1 28 0 238 344 25 8 chr4 129670759 129670881 -54617781 + L3 LINE CR1 1103 1226 -351 378 42 0 0 chr4 129670884 129670932 -54617730 + (TG)n Simple_repeat Simple_repeat 2 49 0 624 288 95 42 chr4 129671813 129672171 -54616491 - LTR33 LTR ERVL -7 514 138 241 268 0 31 chr4 129672264 129672361 -54616301 - LTR33 LTR ERVL -426 95 2 817 244 28 33 chr4 129673526 129673739 -54614923 - MER58A DNA MER1_type -2 222 11 243 146 0 0 chr4 129674307 129674348 -54614314 + (TTTTC)n Simple_repeat Simple_repeat 2 42 0 1180 243 103 62 chr4 129674353 129674451 -54614211 - MER90 LTR ERV1 0 575 483 2127 191 57 43 chr4 129674451 129674958 -54613704 + MER67D LTR ERV1 1 514 0 1180 243 103 62 chr4 129674958 129675411 -54613251 - MER90 LTR ERV1 -92 483 1 385 345 166 16 chr4 129676055 129676362 -54612300 - L2 LINE L2 0 3313 2961 216 162 0 0 chr4 129676852 129676889 -54611773 + GA-rich Low_complexity Low_complexity 2 38 0 1022 196 50 0 chr4 129677117 129677316 -54611346 - MER3 DNA MER1_type 0 209 1 495 290 75 33 chr4 129677544 129677885 -54610777 + L1ME LINE L1 5443 5796 -325 267 394 31 45 chr4 129678062 129678349 -54610313 + L2 LINE L2 2990 3272 0 21 36 0 0 chr4 129678843 129678871 -54609791 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr4 129679618 129679647 -54609015 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr4 129680714 129680739 -54607923 + AT_rich Low_complexity Low_complexity 1 25 0 669 359 50 15 chr4 129681545 129682011 -54606651 + L2 LINE L2 2723 3303 -10 258 353 59 60 chr4 129683343 129683797 -54604865 + L2 LINE L2 2603 3060 -212 206 348 193 0 chr4 129684670 129684805 -54603857 - L2 LINE L2 -10 3262 3102 231 61 0 0 chr4 129684827 129684860 -54603802 + (A)n Simple_repeat Simple_repeat 1 33 0 23 0 0 0 chr4 129687750 129687773 -54600889 + AT_rich Low_complexity Low_complexity 1 23 0 354 211 0 0 chr4 129689116 129689220 -54599442 + (TA)n Simple_repeat Simple_repeat 2 105 0 303 271 25 41 chr4 129689222 129689344 -54599318 + L1MC4 LINE L1 6600 6719 -1323 357 264 0 0 chr4 129689377 129689525 -54599137 + (TA)n Simple_repeat Simple_repeat 1 148 0 391 215 6 23 chr4 129689559 129689736 -54598926 + (TA)n Simple_repeat Simple_repeat 1 174 0 2014 194 30 21 chr4 129689803 129689901 -54598761 + Tigger2a DNA MER2_type 2 98 -2610 231 36 0 0 chr4 129689901 129689929 -54598733 + (TCC)n Simple_repeat Simple_repeat 2 29 0 2014 194 30 21 chr4 129689929 129690259 -54598403 + Tigger2a DNA MER2_type 98 434 0 188 125 25 100 chr4 129690275 129690355 -54598307 + (TA)n Simple_repeat Simple_repeat 2 75 0 217 189 19 19 chr4 129690371 129690424 -54598238 + (CATATA)n Simple_repeat Simple_repeat 1 53 0 182 208 21 0 chr4 129690522 129690570 -54598092 + (TA)n Simple_repeat Simple_repeat 2 50 0 236 365 174 0 chr4 129690742 129690857 -54597805 + MER91A DNA MER1_type 14 148 -48 6245 41 1 0 chr4 129691421 129692170 -54596492 - L1PA5 LINE L1 -1 6153 5404 6742 59 13 2 chr4 129692185 129693053 -54595609 - L1PA7 LINE L1 0 6154 5278 1997 90 0 0 chr4 129693050 129693328 -54595334 + L1PA7 LINE L1 5003 5280 -866 * 2121 106 17 3 chr4 129693337 129693630 -54595032 - AluSx SINE Alu -15 297 1 255 61 0 0 chr4 129694332 129694365 -54594297 + (TG)n Simple_repeat Simple_repeat 1 33 0 21 36 0 0 chr4 129694622 129694650 -54594012 + AT_rich Low_complexity Low_complexity 1 28 0 615 38 0 0 chr4 129694650 129694730 -54593932 - L1PA4 LINE L1 -1 6154 6075 297 0 0 0 chr4 129694955 129694988 -54593674 + (CA)n Simple_repeat Simple_repeat 2 34 0 601 292 65 5 chr4 129698299 129698484 -54590178 - MLT1J1 LTR MaLR -250 196 1 186 43 0 0 chr4 129699795 129699818 -54588844 + (TA)n Simple_repeat Simple_repeat 2 24 0 1529 352 91 23 chr4 129701158 129702199 -54586463 - L3 LINE CR1 -206 1371 260 631 322 51 8 chr4 129703335 129703571 -54585091 - MIR SINE MIR -6 256 11 26383 144 13 12 chr4 129703749 129710042 -54578620 + L1PA8 LINE L1 130 6486 -1 21 57 0 0 chr4 129710692 129710727 -54577935 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 129711066 129711087 -54577575 + AT_rich Low_complexity Low_complexity 1 21 0 302 258 108 0 chr4 129711119 129711212 -54577450 + MIR SINE MIR 90 192 -70 875 155 52 26 chr4 129714944 129715137 -54573525 - MER39 LTR ERV1 -85 622 425 696 125 0 0 chr4 129715137 129715233 -54573429 + MSTB LTR MaLR 1 96 -330 1204 243 33 56 chr4 129715233 129715757 -54572905 - PABL_B LTR ERV1 0 667 2 * 1311 187 84 69 chr4 129715757 129716087 -54572575 + MSTB LTR MaLR 92 426 0 521 189 170 52 chr4 129716087 129716239 -54572423 - MER39 LTR ERV1 -278 429 260 363 324 67 42 chr4 129716642 129716880 -54571782 - L2 LINE L2 -841 2473 2230 36 77 0 0 chr4 129717353 129717431 -54571231 + AT_rich Low_complexity Low_complexity 1 78 0 2013 118 0 64 chr4 129718038 129718368 -54570294 + AluSx SINE Alu 1 309 -3 825 235 0 0 chr4 129719308 129719474 -54569188 - AluJo/FRAM SINE Alu 0 302 137 881 121 7 36 chr4 129719474 129719501 -54569161 - AluSq/x SINE Alu -176 136 110 4984 85 28 1 chr4 129719501 129720204 -54568458 - LTR30 LTR ERV1 0 722 1 881 121 7 36 chr4 129720204 129720316 -54568346 - AluSq/x SINE Alu -202 110 1 1923 143 20 0 chr4 129721864 129722158 -54566504 - AluSx SINE Alu -12 300 1 1531 173 71 4 chr4 129722227 129722482 -54566180 + AluJo SINE Alu 2 273 -39 207 0 0 0 chr4 129722494 129722517 -54566145 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 461 233 0 67 chr4 129722518 129722638 -54566024 + MIR SINE MIR 151 262 0 1680 65 0 0 chr4 129724044 129724245 -54564417 + AluY SINE Alu 97 297 -14 1612 185 4 14 chr4 129724340 129724621 -54564041 - AluJo SINE Alu -27 285 8 23 0 0 0 chr4 129724628 129724651 -54564011 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr4 129724710 129724756 -54563906 + AT_rich Low_complexity Low_complexity 1 46 0 7023 138 26 17 chr4 129724965 129727247 -54561415 - Tigger1 DNA MER2_type 0 2418 24 320 158 26 35 chr4 129727253 129727367 -54561295 + (TATATG)n Simple_repeat Simple_repeat 2 114 0 261 393 0 8 chr4 129727425 129727547 -54561115 + MIR3 SINE MIR 82 202 -6 858 241 26 30 chr4 129727572 129727804 -54560858 - MIR SINE MIR -4 258 28 21 36 0 0 chr4 129729413 129729441 -54559221 + AT_rich Low_complexity Low_complexity 1 28 0 198 292 154 0 chr4 129729441 129729506 -54559156 + L2 LINE L2 3201 3275 -38 257 264 139 0 chr4 129730274 129730346 -54558316 + LTR33A LTR ERVL 61 142 -381 262 254 0 0 chr4 129730676 129730743 -54557919 + LTR33A LTR ERVL 448 514 -9 313 346 33 79 chr4 129731036 129731424 -54557238 + L2 LINE L2 2645 3020 -252 1305 217 28 15 chr4 129731886 129732237 -54556425 + MLT2D LTR ERVL 8 414 0 532 271 191 9 chr4 129732558 129732768 -54555894 - MER77 LTR ERV1 -233 372 125 377 312 112 0 chr4 129733018 129733143 -54555519 + L2 LINE L2 3133 3271 -1 8788 176 59 12 chr4 129733657 129735490 -54553172 - L1MC3 LINE L1 0 7785 5868 1453 136 4 66 chr4 129735492 129735764 -54552898 - MER2 DNA MER2_type -90 255 1 434 364 34 0 chr4 129735899 129736105 -54552557 + LTR33 LTR ERVL 3 215 -306 250 324 9 18 chr4 129736245 129736356 -54552306 + LTR33 LTR ERVL 404 513 -8 2094 174 37 32 chr4 129736447 129736995 -54551667 + MLT2A2 LTR ERVL 1 554 0 594 302 125 61 chr4 129737377 129737987 -54550675 - HERV16 LTR ERVL -1258 4396 3748 330 338 122 22 chr4 129738208 129738486 -54550176 - HERV16 LTR ERVL -2558 3096 2791 2087 99 7 11 chr4 129738551 129738834 -54549828 + AluSc SINE Alu 1 282 -27 1045 364 46 28 chr4 129738852 129739649 -54549013 - HERV16 LTR ERVL -2961 2693 1882 486 346 74 22 chr4 129739679 129740229 -54548433 - HERV16 LTR ERVL -3493 1503 1171 771 156 30 24 chr4 129740237 129740404 -54548258 + MER53 DNA DNA 21 188 -1 551 236 32 0 chr4 129740558 129740681 -54547981 - MER94 DNA DNA -3 131 5 189 0 0 0 chr4 129740739 129740760 -54547902 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 951 220 43 0 chr4 129742327 129742536 -54546126 + MER58A DNA MER1_type 1 218 -6 1472 330 95 42 chr4 129742888 129743096 -54545566 - L2 LINE L2 -55 3258 3063 1928 259 83 11 chr4 129743096 129743647 -54545015 - MLT1G1 LTR MaLR 0 595 5 1472 330 95 42 chr4 129743647 129744736 -54543926 - L2 LINE L2 -250 3063 1897 2261 105 13 34 chr4 129744908 129745290 -54543372 + L1P5 LINE L1 5404 5777 -379 201 121 0 0 chr4 129745714 129745747 -54542915 + (CAAAG)n Simple_repeat Simple_repeat 2 34 0 24 0 0 0 chr4 129745944 129745968 -54542694 + AT_rich Low_complexity Low_complexity 1 24 0 1848 220 37 24 chr4 129746160 129746614 -54542048 + MLT1C LTR MaLR 6 465 -2 6003 193 58 24 chr4 129746999 129748480 -54540182 - Looper DNA T2_type -26 1532 2 14736 176 48 7 chr4 129748641 129749269 -54539393 - L1PB2 LINE L1 -1 6866 6265 1909 160 7 3 chr4 129749269 129749576 -54539086 - AluSx SINE Alu -4 308 1 14736 176 48 7 chr4 129749576 129755560 -54533102 - L1PB2 LINE L1 -602 6265 3 595 291 99 14 chr4 129755943 129756156 -54532506 + MIR SINE MIR 32 262 0 580 368 86 25 chr4 129756185 129756663 -54531999 - L3 LINE CR1 -207 1370 864 363 336 21 0 chr4 129756750 129756897 -54531765 - MIR SINE MIR -57 205 57 23 0 0 0 chr4 129756952 129756975 -54531687 + AT_rich Low_complexity Low_complexity 1 23 0 730 322 61 55 chr4 129757032 129757482 -54531180 - L3 LINE CR1 -838 739 284 2120 125 0 6 chr4 129757482 129757793 -54530869 - AluSc SINE Alu 0 309 1 730 322 61 55 chr4 129757793 129757886 -54530776 - L3 LINE CR1 -1293 284 193 2021 119 0 21 chr4 129758451 129758905 -54529757 - AluSg SINE Alu 0 448 1 651 220 13 7 chr4 129758930 129759080 -54529582 - MLT1E2 LTR MaLR 0 505 355 926 104 0 0 chr4 129759102 129759227 -54529435 - AluJb SINE Alu -187 125 1 987 201 93 82 chr4 129759232 129759586 -54529076 - MLT1E2 LTR MaLR -145 360 3 2023 103 0 0 chr4 129760808 129761080 -54527582 - AluY SINE Alu -13 298 27 1961 172 6 6 chr4 129761192 129761552 -54527110 + L1PB4 LINE L1 5797 6156 0 542 299 93 16 chr4 129761991 129762185 -54526477 - MIR SINE MIR -21 241 33 378 0 0 0 chr4 129762222 129762264 -54526398 + (CA)n Simple_repeat Simple_repeat 1 42 0 22 0 0 0 chr4 129764078 129764100 -54524562 + AT_rich Low_complexity Low_complexity 1 22 0 2488 56 0 7 chr4 129764590 129764893 -54523769 + AluY SINE Alu 1 301 -10 21 0 0 0 chr4 129765042 129765063 -54523599 + AT_rich Low_complexity Low_complexity 1 21 0 2515 72 0 0 chr4 129767858 129768165 -54520497 - AluY SINE Alu -4 307 1 277 254 0 16 chr4 129768857 129768920 -54519742 - L2 LINE L2 -2 3311 3250 325 296 182 15 chr4 129768991 129769123 -54519539 + L2 LINE L2 3147 3300 -13 2091 136 0 13 chr4 129769310 129769618 -54519044 - AluSx SINE Alu -6 306 3 978 218 77 13 chr4 129769876 129770174 -54518488 + MER33 DNA MER1_type 5 321 -3 205 346 123 0 chr4 129771088 129771169 -54517493 - MIR SINE MIR -85 123 33 2113 162 83 0 chr4 129774338 129774733 -54513929 - MSTA LTR MaLR 0 428 1 574 296 39 4 chr4 129775440 129775670 -54512992 - L1MC4a LINE L1 -1892 5916 5679 1191 297 84 40 chr4 129775684 129776454 -54512208 - HAL1b LINE L1 -460 888 85 343 285 32 24 chr4 129776628 129776751 -54511911 - L2 LINE L2 0 3313 3190 5732 71 16 24 chr4 129776797 129777583 -54511079 + LTR17 LTR ERV1 1 780 0 2136 116 0 16 chr4 129777708 129778011 -54510651 - AluSq SINE Alu -15 298 1 550 202 29 12 chr4 129778222 129778466 -54510196 + GA-rich Low_complexity Low_complexity 1 248 0 378 209 3 36 chr4 129778472 129778583 -54510079 + MER58 DNA MER1_type 112 2420 0 216 163 0 0 chr4 129778743 129778786 -54509876 + (TG)n Simple_repeat Simple_repeat 1 43 0 * 234 62 0 0 chr4 129778785 129778817 -54509845 + (GA)n Simple_repeat Simple_repeat 1 32 0 215 183 100 17 chr4 129779464 129779524 -54509138 - L2 LINE L2 -1 3271 3207 1396 207 62 97 chr4 129781831 129782445 -54506217 - MLT2B1 LTR ERVL 0 520 1 399 235 83 41 chr4 129782880 129783050 -54505612 - MIR SINE MIR -56 152 17 472 240 80 8 chr4 129784156 129784281 -54504381 - MER103 DNA DNA -18 148 15 698 256 18 40 chr4 129784282 129784505 -54504157 - L2 LINE L2 -2 3311 3094 211 329 0 43 chr4 129785121 129785191 -54503471 - L2 LINE L2 -1 3271 3205 193 306 28 14 chr4 129785348 129785420 -54503242 - L2 LINE L2 -646 2668 2596 376 287 166 34 chr4 129785582 129785993 -54502669 + L2 LINE L2 1641 2105 -1209 190 309 48 48 chr4 129786208 129786292 -54502370 + L2 LINE L2 2422 2505 -809 208 337 22 22 chr4 129786341 129786433 -54502229 - L2 LINE L2 -248 3024 2933 426 354 44 51 chr4 129786493 129787005 -54501657 + L2 LINE L2 2770 3272 0 1932 127 0 7 chr4 129787155 129787431 -54501231 + AluJb SINE Alu 20 293 -19 2336 282 150 27 chr4 129787474 129788785 -54499877 + L2 LINE L2 1699 3173 -140 240 270 61 47 chr4 129789384 129789532 -54499130 + L2 LINE L2 3164 3313 0 250 180 115 16 chr4 129789669 129789730 -54498932 + MIR SINE MIR 125 191 -71 24 53 0 0 chr4 129790236 129790274 -54498388 + AT_rich Low_complexity Low_complexity 1 38 0 992 181 22 75 chr4 129790349 129790575 -54498087 - MER20 DNA MER1_type 0 219 6 381 273 47 8 chr4 129790757 129790885 -54497777 - MER94 DNA DNA -1 133 1 271 284 53 135 chr4 129790887 129791190 -54497472 - L2 LINE L2 -35 3278 3001 451 269 11 60 chr4 129791313 129791495 -54497167 - MER69A DNA AcHobo -4 173 1 202 225 0 0 chr4 129793004 129793044 -54495618 + (TATG)n Simple_repeat Simple_repeat 1 40 0 241 349 78 21 chr4 129793396 129793588 -54495074 + MIR SINE MIR 47 249 -13 196 243 39 97 chr4 129793681 129793784 -54494878 - L2 LINE L2 -7 3265 3169 962 312 61 20 chr4 129794106 129794597 -54494065 + MLT1J LTR MaLR 1 511 0 22 56 0 0 chr4 129794670 129794706 -54493956 + AT_rich Low_complexity Low_complexity 1 36 0 244 157 0 43 chr4 129794724 129794794 -54493868 + L1ME4a LINE L1 6036 6102 -19 226 293 91 56 chr4 129794782 129794980 -54493682 - L1ME LINE L1 -404 5717 5513 * 3684 267 140 24 chr4 129795131 129796651 -54492011 - L2 LINE L2 -828 2486 726 273 267 13 0 chr4 129796898 129796973 -54491689 + MER116 DNA Mariner 5 80 0 325 370 106 0 chr4 129797447 129797655 -54491007 - L1MC4a LINE L1 -1846 5962 5733 282 283 47 38 chr4 129797661 129797767 -54490895 + MIR SINE MIR 138 244 -18 22 0 0 0 chr4 129798011 129798033 -54490629 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr4 129798283 129798303 -54490359 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 297 357 60 15 chr4 129798384 129798583 -54490079 + LTR16C LTR ERVL 284 491 0 290 291 0 68 chr4 129799421 129799538 -54489124 + HERV16 LTR ERVL 887 995 -4001 428 362 76 24 chr4 129799579 129800046 -54488616 + HERV16 LTR ERVL 1185 1564 -3432 1691 322 48 30 chr4 129800443 129801323 -54487339 + HERV16 LTR ERVL 2307 3202 -2562 521 346 13 8 chr4 129801397 129801631 -54487031 + HERV16 LTR ERVL 3312 3546 -2218 1017 295 28 3 chr4 129801936 129802258 -54486404 + MER58B DNA MER1_type 1 330 -11 1039 333 126 40 chr4 129802268 129802336 -54486326 + HERV16 LTR ERVL 3871 3932 -1722 2361 74 0 16 chr4 129802336 129802645 -54486017 + AluY SINE Alu 1 304 -7 1039 333 126 40 chr4 129802645 129803484 -54485178 + HERV16 LTR ERVL 3932 4856 -798 291 289 47 62 chr4 129804613 129804869 -54483793 - L1 LINE L1 -1329 4817 4566 27 29 0 0 chr4 129804977 129805011 -54483651 + AT_rich Low_complexity Low_complexity 1 34 0 231 215 31 15 chr4 129805496 129805561 -54483101 - L1P LINE L1 -1906 4240 4175 2381 75 0 24 chr4 129806056 129806391 -54482271 - L1PA10 LINE L1 -5 6163 5837 22 0 0 0 chr4 129807609 129807631 -54481031 + AT_rich Low_complexity Low_complexity 1 22 0 1862 146 0 69 chr4 129808861 129809223 -54479439 + MER1B DNA MER1_type 1 337 0 3362 196 15 15 chr4 129809382 129810117 -54478545 + L1MB3 LINE L1 5446 6180 -3 188 338 98 34 chr4 129813826 129814214 -54474448 - L2 LINE L2 -682 2632 2220 530 96 0 0 chr4 129814339 129814422 -54474240 + L1PB1 LINE L1 6066 6148 -3 182 266 28 92 chr4 129814581 129814690 -54473972 + L2 LINE L2 2858 2959 -313 22 56 0 0 chr4 129814798 129814834 -54473828 + AT_rich Low_complexity Low_complexity 1 36 0 278 301 59 29 chr4 129814956 129815092 -54473570 + MIR SINE MIR 121 260 -2 21 57 0 0 chr4 129816838 129816873 -54471789 + AT_rich Low_complexity Low_complexity 1 35 0 1698 171 7 14 chr4 129816878 129817170 -54471492 - MLT1A1 LTR MaLR 0 365 76 432 214 0 0 chr4 129817191 129817280 -54471382 - MLT1L-int LTR MaLR -1620 115 27 1392 165 91 3 chr4 129817779 129818076 -54470586 - L1MA8 LINE L1 -3 6288 5966 2066 142 0 3 chr4 129818077 129818380 -54470282 - AluSg SINE Alu -8 302 1 27 49 0 0 chr4 129819017 129819058 -54469604 + AT_rich Low_complexity Low_complexity 1 41 0 1306 201 5 114 chr4 129819167 129819569 -54469093 + Charlie1a DNA MER1_type 3 360 -1095 4114 213 52 10 chr4 129819570 129820755 -54467907 - L1MB3 LINE L1 -20 6163 4947 2843 216 56 46 chr4 129820755 129821644 -54467018 + Charlie1a DNA MER1_type 305 1202 -253 500 256 18 94 chr4 129821648 129821925 -54466737 - L1MC4 LINE L1 -1299 6743 6488 254 158 0 0 chr4 129822336 129822374 -54466288 + L1M4 LINE L1 5069 5106 -1040 448 175 61 18 chr4 129822385 129822499 -54466163 + L1MB8 LINE L1 6059 6177 -1 509 266 77 97 chr4 129822704 129823053 -54465609 - L2 LINE L2 0 3313 2972 242 291 103 17 chr4 129823147 129823264 -54465398 - MLT1L LTR MaLR -23 592 466 1448 227 85 13 chr4 129823291 129823678 -54464984 - MER63B DNA MER1_type 0 436 22 1210 29 0 0 chr4 129823678 129823818 -54464844 - L1PA2 LINE L1 -443 5712 5573 * 3677 17 0 0 chr4 129823815 129824235 -54464427 + L1PA2 LINE L1 5701 6120 -35 32 0 0 0 chr4 129824335 129824367 -54464295 + AT_rich Low_complexity Low_complexity 1 32 0 599 300 82 0 chr4 129826383 129826553 -54462109 - MIR SINE MIR -13 249 66 383 356 67 0 chr4 129828447 129828627 -54460035 - MLT1L LTR MaLR -418 197 6 2621 48 0 0 chr4 129830049 129830359 -54458303 + AluY SINE Alu 1 310 -1 27 29 0 0 chr4 129830576 129830610 -54458052 + AT_rich Low_complexity Low_complexity 1 34 0 324 272 9 35 chr4 129831116 129831230 -54457432 - MLT1L LTR MaLR 0 615 505 2076 112 0 14 chr4 129831384 129831702 -54456960 + AluY SINE Alu 1 314 0 321 269 26 0 chr4 129831888 129831966 -54456696 - MLT1I LTR MaLR -17 392 313 2371 127 0 3 chr4 129831976 129832346 -54456316 - L1PB1 LINE L1 -1 6866 6498 13257 200 12 4 chr4 129832455 129832507 -54456155 - L1PB1 LINE L1 -607 6260 6210 450 0 0 0 chr4 129832507 129832557 -54456105 + (TA)n Simple_repeat Simple_repeat 2 51 0 13257 200 12 4 chr4 129832557 129835588 -54453074 - L1PB1 LINE L1 -657 6210 3153 4198 203 87 9 chr4 129835605 129836573 -54452089 - L1PB1 LINE L1 -5815 1048 6 232 291 0 0 chr4 129836610 129836665 -54451997 - MLT1I LTR MaLR -137 272 218 2722 261 45 16 chr4 129836703 129837522 -54451140 - L1ME1 LINE L1 -8 6227 5385 379 252 114 0 chr4 129837547 129837670 -54450992 - L1ME1 LINE L1 -3344 2871 2735 29 0 0 0 chr4 129837678 129837707 -54450955 + AT_rich Low_complexity Low_complexity 1 29 0 610 219 36 36 chr4 129837822 129837959 -54450703 + FRAM SINE Alu 10 146 -30 288 0 0 0 chr4 129837960 129837992 -54450670 + (TAAAA)n Simple_repeat Simple_repeat 1 32 0 675 255 7 0 chr4 129837993 129838142 -54450520 - MER8 DNA MER2_type -86 153 4 1538 281 35 9 chr4 129838143 129838903 -54449759 - L1ME1 LINE L1 -3527 2688 1948 333 336 9 9 chr4 129839122 129839232 -54449430 + LTR67 LTR ERVL 108 217 -340 323 265 12 12 chr4 129839314 129839397 -54449265 - L1MC4 LINE L1 -1346 6696 6614 1664 261 86 2 chr4 129839426 129839970 -54448692 - L1MC4 LINE L1 -215 7827 7238 828 262 101 17 chr4 129839978 129840262 -54448400 - L1MC4 LINE L1 -773 7012 6730 1899 169 0 0 chr4 129840262 129840569 -54448093 + AluSg SINE Alu 3 309 -1 828 262 101 17 chr4 129840569 129840627 -54448035 - L1MC4 LINE L1 -1055 6730 6678 373 331 171 8 chr4 129841425 129841670 -54446992 + L1M2 LINE L1 173 457 -5856 6143 260 66 26 chr4 129842198 129845481 -54443181 + L1M2 LINE L1 887 4241 -2141 1532 184 81 50 chr4 129845481 129845899 -54442763 - MSTB1 LTR MaLR -1 431 1 6143 260 66 26 chr4 129845899 129845953 -54442709 + L1M2 LINE L1 4241 4291 -2091 16470 80 7 5 chr4 129845954 129848202 -54440460 - L1PA5 LINE L1 -3303 2843 592 19329 64 2 4 chr4 129848202 129851528 -54437134 + L1PA5 LINE L1 2857 6154 0 6082 192 27 3 chr4 129851538 129853234 -54435428 + L1M2 LINE L1 4295 6027 -521 759 122 0 0 chr4 129853252 129853375 -54435287 + L1MA9 LINE L1 6188 6310 -2 497 189 0 44 chr4 129853648 129853807 -54434855 + GA-rich Low_complexity Low_complexity 3 154 0 643 260 137 32 chr4 129854021 129854240 -54434422 + MIR SINE MIR 1 242 -20 242 284 131 57 chr4 129854746 129854922 -54433740 - MIR SINE MIR -25 237 49 1905 214 8 3 chr4 129856910 129857266 -54431396 - MLT1A1 LTR MaLR -7 358 1 479 344 130 25 chr4 129857418 129857821 -54430841 + L2 LINE L2 1897 2353 -961 1574 191 22 48 chr4 129857821 129858192 -54430470 + MLT1A1 LTR MaLR 4 364 -1 479 344 130 25 chr4 129858192 129858233 -54430429 + L2 LINE L2 2353 2388 -926 376 232 74 0 chr4 129858921 129859016 -54429646 + MER58C DNA MER1_type 114 215 0 318 115 0 0 chr4 129860614 129860666 -54427996 + (TC)n Simple_repeat Simple_repeat 1 52 0 1643 173 0 26 chr4 129860867 129861179 -54427483 + MER31A LTR ERV1 1 304 -181 219 361 95 36 chr4 129861593 129861867 -54426795 + L2 LINE L2 2658 2947 -367 433 264 99 22 chr4 129861926 129862108 -54426554 + L2 LINE L2 3118 3313 0 1543 205 104 72 chr4 129863224 129863739 -54424923 - Charlie2a DNA MER1_type -108 2754 2257 1107 198 25 90 chr4 129863739 129864062 -54424600 - AluJb SINE Alu 0 302 1 1543 205 104 72 chr4 129864062 129864739 -54423923 - Charlie2a DNA MER1_type -605 2257 1463 829 275 231 15 chr4 129864788 129865195 -54423467 - Charlie2b DNA MER1_type -2112 670 176 3358 207 74 10 chr4 129865195 129866069 -54422593 + MER63C DNA MER1_type 1 930 0 1155 313 31 31 chr4 129866434 129866878 -54421784 + LTR16A LTR ERVL 7 450 0 1561 309 19 37 chr4 129866879 129867507 -54421155 + HERV16 LTR ERVL 2 618 -4378 2535 180 44 69 chr4 129867612 129868340 -54420322 + L1MD2 LINE L1 5649 6358 -1 403 325 108 41 chr4 129868597 129869133 -54419529 + L1 LINE L1 3963 4534 -1612 1885 138 3 38 chr4 129869210 129869530 -54419132 + AluSx SINE Alu 1 309 -3 937 192 6 0 chr4 129870386 129870563 -54418099 - L1P LINE L1 -1537 4609 4432 * 5723 85 9 6 chr4 129870555 129871355 -54417307 + L1PA14 LINE L1 5360 6161 0 293 270 22 11 chr4 129872160 129872249 -54416413 + LTR33 LTR ERVL 5 94 -427 708 285 86 8 chr4 129872304 129872560 -54416102 + LTR33 LTR ERVL 238 513 -8 268 159 0 127 chr4 129873145 129873208 -54415454 - L2 LINE L2 -4 3309 3255 307 258 126 20 chr4 129875454 129875605 -54413057 - HAL1b LINE L1 -191 1157 991 24 77 0 0 chr4 129875610 129875662 -54413000 + AT_rich Low_complexity Low_complexity 1 52 0 2135 141 0 0 chr4 129875794 129876099 -54412563 - AluSg SINE Alu -5 305 1 1272 279 63 40 chr4 129876099 129876376 -54412286 - HAL1b LINE L1 -543 805 536 1723 211 81 0 chr4 129876376 129876835 -54411827 - LTR54B LTR ERV1 -2 496 1 1272 279 63 40 chr4 129876835 129877291 -54411371 - HAL1b LINE L1 -812 536 55 1927 132 0 14 chr4 129879001 129879297 -54409365 - AluSx SINE Alu -1 311 20 7618 92 15 0 chr4 129882052 129883156 -54405506 - L1P LINE L1 -743 5403 4283 213 39 0 0 chr4 129883345 129883371 -54405291 + (TC)n Simple_repeat Simple_repeat 2 27 0 645 224 118 12 chr4 129884796 129885051 -54403611 + MER33 DNA MER1_type 17 298 -26 1206 230 48 60 chr4 129885051 129885580 -54403082 + MER39 LTR ERV1 1 707 0 207 220 20 0 chr4 129887142 129887234 -54401428 + (CATATA)n Simple_repeat Simple_repeat 1 93 0 260 309 27 18 chr4 129887984 129888094 -54400568 - MER5A DNA MER1_type -75 114 4 6081 136 67 41 chr4 129888213 129889413 -54399249 + Tigger3b DNA MER2_type 1 1231 0 21 0 0 0 chr4 129889708 129889729 -54398933 + AT_rich Low_complexity Low_complexity 1 21 0 221 417 0 24 chr4 129889893 129890020 -54398642 + L2 LINE L2 2926 3049 -223 2695 88 6 0 chr4 129890328 129890681 -54397981 - THE1A LTR MaLR 0 355 1 21 57 0 0 chr4 129891164 129891199 -54397463 + AT_rich Low_complexity Low_complexity 1 35 0 539 314 47 93 chr4 129891686 129892158 -54396504 + L2 LINE L2 2862 3311 -2 487 303 59 42 chr4 129892159 129892687 -54395975 + L1M4 LINE L1 4061 4597 -1549 4739 76 0 0 chr4 129893388 129893995 -54394667 - L1PA7 LINE L1 -6 6148 5542 5980 192 30 45 chr4 129894578 129896299 -54392363 - L1MB1 LINE L1 0 6404 4658 2362 71 3 0 chr4 129896299 129896594 -54392068 - AluY SINE Alu -15 296 1 5980 192 30 45 chr4 129896594 129897117 -54391545 - L1MB1 LINE L1 -1746 4658 4205 2050 156 34 0 chr4 129897117 129897469 -54391193 - THE1B LTR MaLR 0 364 1 5980 192 30 45 chr4 129897469 129897694 -54390968 - L1MB1 LINE L1 -2199 4205 3978 2091 260 63 32 chr4 129897736 129898875 -54389787 - L1MB1 LINE L1 -4516 1787 798 785 301 60 85 chr4 129899020 129899873 -54388789 - L1M3de LINE L1 -5203 688 3 25 31 0 0 chr4 129899879 129899911 -54388751 + AT_rich Low_complexity Low_complexity 1 32 0 35 24 0 0 chr4 129900915 129900957 -54387705 + AT_rich Low_complexity Low_complexity 1 42 0 1581 177 0 0 chr4 129901002 129901285 -54387377 + AluSc SINE Alu 1 283 -26 23 0 0 0 chr4 129901523 129901546 -54387116 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr4 129902449 129902471 -54386191 + (CACAA)n Simple_repeat Simple_repeat 4 25 0 25 0 0 0 chr4 129903718 129903743 -54384919 + AT_rich Low_complexity Low_complexity 1 25 0 1872 140 0 21 chr4 129903953 129904238 -54384424 + AluSx SINE Alu 1 279 -33 276 30 0 0 chr4 129904241 129904274 -54384388 + (TAA)n Simple_repeat Simple_repeat 2 34 0 233 338 111 25 chr4 129905639 129905837 -54382825 + MIR SINE MIR 21 235 -27 400 281 74 0 chr4 129905884 129906005 -54382657 + MIR3 SINE MIR 64 193 -15 10082 117 16 1 chr4 129906220 129907660 -54381002 + THE1B-int LTR MaLR 119 1580 0 2067 126 50 31 chr4 129907660 129908017 -54380645 + THE1B LTR MaLR 1 364 0 300 257 9 9 chr4 129908028 129908141 -54380521 + L1MC/D LINE L1 5349 5461 -781 28144 129 13 74 chr4 129908152 129914724 -54373938 - L1PA8 LINE L1 -8 6164 12 270 236 114 50 chr4 129914854 129914943 -54373719 - MER103 DNA DNA -17 149 46 2016 143 0 3 chr4 129914943 129915236 -54373426 + AluSx SINE Alu 1 292 -20 270 236 114 50 chr4 129915236 129915286 -54373376 - MER103 DNA DNA -120 46 1 612 308 45 27 chr4 129915474 129915698 -54372964 + MIR SINE MIR 32 259 -3 195 69 0 0 chr4 129915841 129915870 -54372792 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1317 201 4 0 chr4 129916049 129916322 -54372340 - THE1B-int LTR MaLR -1306 274 1 1958 156 45 31 chr4 129916322 129916681 -54371981 - THE1B LTR MaLR 0 364 1 1716 244 29 20 chr4 129916792 129917340 -54371322 - L1M4 LINE L1 -1087 5059 4507 1261 259 85 47 chr4 129917462 129917910 -54370752 - MER77 LTR ERV1 -7 598 134 810 202 10 72 chr4 129917925 129918133 -54370529 - MER77 LTR ERV1 -410 195 1 341 258 172 18 chr4 129918159 129918322 -54370340 + MLT1H LTR MaLR 118 305 -244 308 254 80 0 chr4 129918341 129918446 -54370216 + MLT1H1 LTR MaLR 431 555 0 732 263 89 30 chr4 129918758 129919251 -54369411 + L1MC/D LINE L1 2168 2647 -3568 304 333 58 21 chr4 129919882 129920125 -54368537 + L1MC/D LINE L1 5387 5638 -2239 1044 195 64 8 chr4 129920216 129920452 -54368210 + AluJo SINE Alu 44 292 -20 988 54 78 0 chr4 129920513 129920642 -54368020 - MER85 DNA T2_type 0 139 1 254 355 13 0 chr4 129921074 129921150 -54367512 + L2 LINE L2 3233 3309 -4 22 56 0 0 chr4 129921442 129921478 -54367184 + AT_rich Low_complexity Low_complexity 1 36 0 1815 124 4 18 chr4 129921687 129921961 -54366701 + AluSx SINE Alu 37 306 -6 24 32 0 0 chr4 129922408 129922439 -54366223 + AT_rich Low_complexity Low_complexity 1 31 0 467 307 0 0 chr4 129923888 129924002 -54364660 + MLT1I LTR MaLR 33 146 -263 201 94 0 0 chr4 129924138 129924170 -54364492 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 483 307 64 51 chr4 129924775 129925088 -54363574 + L2 LINE L2 2995 3311 -2 258 341 167 0 chr4 129925149 129925281 -54363381 - MIR SINE MIR -89 173 20 2746 19 0 3 chr4 129925870 129926181 -54362481 - AluY SINE Alu -1 310 1 22 0 0 0 chr4 129926679 129926701 -54361961 + AT_rich Low_complexity Low_complexity 1 22 0 30 59 0 0 chr4 129927412 129927463 -54361199 + AT_rich Low_complexity Low_complexity 1 51 0 183 375 36 9 chr4 129927522 129927634 -54361028 + L3 LINE CR1 1052 1166 -411 257 324 28 28 chr4 129928093 129928201 -54360461 - MER91C DNA MER1_type -22 118 11 212 310 11 58 chr4 129928208 129928295 -54360367 - L2 LINE L2 -554 2760 2678 413 326 67 36 chr4 129928341 129928768 -54359894 - L2 LINE L2 0 3313 2794 910 179 42 11 chr4 129932685 129932875 -54355787 - L1PB4 LINE L1 -6 6150 5955 2253 104 3 0 chr4 129933428 129933727 -54354935 + AluSp SINE Alu 1 300 -13 26 88 0 0 chr4 129933874 129933942 -54354720 + AT_rich Low_complexity Low_complexity 1 68 0 26 0 0 0 chr4 129934666 129934692 -54353970 + AT_rich Low_complexity Low_complexity 1 26 0 216 0 0 0 chr4 129936845 129936869 -54351793 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 267 93 0 0 chr4 129937442 129937485 -54351177 + (T)n Simple_repeat Simple_repeat 1 43 0 2945 31 0 0 chr4 129937487 129937842 -54350820 - L1HS LINE L1 0 6155 5801 1291 0 0 0 chr4 129937836 129937977 -54350685 + L1P1 LINE L1 5564 5704 -451 * 1132 212 89 54 chr4 129938377 129938915 -54349747 - MER67C LTR ERV1 0 514 1 549 267 126 19 chr4 129939202 129939408 -54349254 + MIR SINE MIR 9 236 -26 253 336 18 30 chr4 129939870 129940005 -54348657 + MIR SINE MIR 2 137 -71 233 350 53 83 chr4 129940144 129940410 -54348252 - L2 LINE L2 0 3272 3015 257 340 97 82 chr4 129940457 129940608 -54348054 - L2 LINE L2 -452 2862 2715 1689 150 60 38 chr4 129940608 129940975 -54347687 + THE1C LTR MaLR 1 375 0 257 340 97 82 chr4 129940975 129941681 -54346981 - L2 LINE L2 -599 2715 1992 24 67 0 0 chr4 129941974 129942019 -54346643 + AT_rich Low_complexity Low_complexity 1 45 0 412 260 66 99 chr4 129942342 129942618 -54346044 + L1M4 LINE L1 2850 3113 -3033 2528 53 7 0 chr4 129942618 129942920 -54345742 + AluSq SINE Alu 1 304 -9 412 260 66 99 chr4 129942920 129943005 -54345657 + L1M4 LINE L1 3113 3199 -2947 459 338 12 25 chr4 129943580 129943741 -54344921 + MIR SINE MIR 3 160 -62 186 329 13 13 chr4 129943936 129944012 -54344650 - L2 LINE L2 -33 3280 3205 199 350 165 0 chr4 129944550 129944609 -54344053 + MIR SINE MIR 33 81 -127 450 0 0 0 chr4 129944609 129944659 -54344003 + (TA)n Simple_repeat Simple_repeat 1 50 0 199 350 165 0 chr4 129944659 129944696 -54343966 + MIR SINE MIR 81 145 -63 1782 124 7 11 chr4 129944923 129945196 -54343466 + AluSx SINE Alu 37 308 -4 1717 184 21 24 chr4 129946044 129946418 -54342244 - L1MA8 LINE L1 -23 6268 5896 234 321 0 9 chr4 129946530 129946636 -54342026 + L1ME LINE L1 843 947 -5123 25 0 0 0 chr4 129947541 129947566 -54341096 + AT_rich Low_complexity Low_complexity 1 25 0 359 349 80 15 chr4 129947761 129948025 -54340637 + L1MCc LINE L1 158 438 -5985 180 0 0 0 chr4 129948541 129948561 -54340101 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 273 215 32 21 chr4 129948579 129948672 -54339990 + L1MCc LINE L1 1263 1356 -5067 196 209 15 15 chr4 129948677 129948744 -54339918 + A-rich Low_complexity Low_complexity 2 68 0 949 306 60 40 chr4 129948761 129949619 -54339043 + L1MCc LINE L1 1366 2449 -4569 2595 14 0 0 chr4 129949619 129949906 -54338756 + AluYb8 SINE Alu 29 315 -3 949 306 60 40 chr4 129949906 129950014 -54338648 + L1MCc LINE L1 2449 2553 -4465 548 253 32 16 chr4 129950076 129950262 -54338400 + L1MCc LINE L1 2560 2748 -4374 1051 319 42 15 chr4 129950262 129950669 -54337993 - LTR16A LTR ERVL -15 435 18 1296 95 0 19 chr4 129951210 129951459 -54337203 + (GGAA)n Simple_repeat Simple_repeat 3 245 0 237 391 41 12 chr4 129952896 129953065 -54335597 + MIR3 SINE MIR 17 201 -48 21 0 0 0 chr4 129953232 129953253 -54335409 + AT_rich Low_complexity Low_complexity 1 21 0 233 196 0 0 chr4 129953493 129953544 -54335118 - L1MC4 LINE L1 -1340 6702 6652 210 167 0 21 chr4 129954292 129954340 -54334322 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 1710 223 39 41 chr4 129954897 129955381 -54333281 + MER31A LTR ERV1 3 485 0 2590 99 3 0 chr4 129955949 129956303 -54332359 + THE1A LTR MaLR 1 355 0 11027 105 15 5 chr4 129956303 129957867 -54330795 + THE1A-int LTR MaLR 1 1580 0 2385 99 15 0 chr4 129957867 129958200 -54330462 + THE1A LTR MaLR 1 338 -17 335 293 157 0 chr4 129958579 129958726 -54329936 - MIR SINE MIR -55 207 38 228 256 58 12 chr4 129959003 129959089 -54329573 - L1ME LINE L1 -351 5811 5722 410 313 9 0 chr4 129959236 129959348 -54329314 + MLT1E LTR MaLR 51 163 -430 * 635 209 6 37 chr4 129959315 129959478 -54329184 + MLT1E1 LTR MaLR 103 260 -394 240 108 27 0 chr4 129959596 129959633 -54329029 + MLT2E LTR ERVL 577 614 -14 316 305 11 21 chr4 129959672 129959767 -54328895 - MIR SINE MIR -138 124 31 228 269 0 51 chr4 129960125 129960203 -54328459 - Charlie8 DNA MER1_type -2202 215 142 24 32 0 0 chr4 129960231 129960262 -54328400 + AT_rich Low_complexity Low_complexity 1 31 0 458 279 39 59 chr4 129961288 129961492 -54327170 + L1MCb LINE L1 1 200 -5845 293 213 25 0 chr4 129961503 129961583 -54327079 + L1MCb LINE L1 2388 2469 -4095 2068 253 12 54 chr4 129961632 129962157 -54326505 + L1MCb LINE L1 2549 3036 -3528 1675 127 4 4 chr4 129962157 129962409 -54326253 - AluSg SINE Alu -2 308 57 2068 253 12 54 chr4 129962409 129962619 -54326043 + L1MCb LINE L1 3036 3253 -3311 1658 199 7 29 chr4 129962618 129963036 -54325626 + L1MC3 LINE L1 6702 7110 -675 * 381 333 75 10 chr4 129963065 129963266 -54325396 - HAL1 LINE L1 -1946 561 348 207 162 0 0 chr4 129964192 129964229 -54324433 + CT-rich Low_complexity Low_complexity 4 40 0 427 250 55 8 chr4 129964235 129964363 -54324299 - L2 LINE L2 -4 3309 3176 180 0 0 0 chr4 129964440 129964460 -54324202 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3262 248 16 18 chr4 129964462 129965092 -54323570 + L1PA16 LINE L1 5311 5939 -227 1756 168 3 20 chr4 129965743 129966046 -54322616 + AluJo SINE Alu 1 298 -14 680 224 47 18 chr4 129968706 129968876 -54319786 - MER45A DNA AcHobo 0 178 4 352 241 86 123 chr4 129969368 129969555 -54319107 + MLT1J LTR MaLR 226 405 -106 366 91 0 0 chr4 129970987 129971042 -54317620 + (CA)n Simple_repeat Simple_repeat 2 56 0 331 346 57 18 chr4 129972000 129972228 -54316434 + HAL1 LINE L1 1072 1308 -1199 28 79 0 0 chr4 129973022 129973085 -54315577 + AT_rich Low_complexity Low_complexity 1 63 0 32 26 0 0 chr4 129973726 129973765 -54314897 + AT_rich Low_complexity Low_complexity 1 39 0 2195 97 0 0 chr4 129973810 129974131 -54314531 + AluSc SINE Alu 1 321 0 22 0 0 0 chr4 129974330 129974352 -54314310 + AT_rich Low_complexity Low_complexity 1 22 0 206 302 101 34 chr4 129974601 129974750 -54313912 - MIR SINE MIR -56 206 48 50 59 0 0 chr4 129974887 129974972 -54313690 + AT_rich Low_complexity Low_complexity 1 85 0 2071 133 0 0 chr4 129975394 129975694 -54312968 + AluSc SINE Alu 1 300 -9 40168 58 5 1 chr4 129975807 129981934 -54306728 - L1PA5 LINE L1 -1 6153 11 6420 92 6 2 chr4 129982069 129984058 -54304604 + L1PA14 LINE L1 4159 6161 0 2364 155 10 0 chr4 129985121 129985520 -54303142 - MER57A LTR ERV1 0 403 1 253 291 73 45 chr4 129986796 129987043 -54301619 - L1M4 LINE L1 -1141 5005 4752 1838 220 43 24 chr4 129987051 129987542 -54301120 - MLT1D LTR MaLR -4 501 2 347 254 8 42 chr4 129987764 129987882 -54300780 - L1M4 LINE L1 -1658 4488 4375 222 246 0 0 chr4 129987963 129988024 -54300638 + (CATA)n Simple_repeat Simple_repeat 4 64 0 526 309 77 27 chr4 129988318 129988919 -54299743 - L1M4 LINE L1 -2160 3986 3356 1956 187 0 11 chr4 129989266 129989635 -54299027 + MLT1A1 LTR MaLR 1 365 0 628 316 115 43 chr4 129991768 129992116 -54296546 - L2 LINE L2 -1 3312 2940 260 331 45 45 chr4 129992145 129992278 -54296384 - L2 LINE L2 -453 2861 2729 342 45 0 0 chr4 129992361 129992405 -54296257 + (TA)n Simple_repeat Simple_repeat 2 45 0 3117 124 15 17 chr4 129992948 129993424 -54295238 - MER1A DNA MER1_type -2 527 53 2196 62 28 3 chr4 129993655 129993946 -54294716 + AluY SINE Alu 1 298 -13 25 31 0 0 chr4 129994551 129994583 -54294079 + AT_rich Low_complexity Low_complexity 1 32 0 340 177 42 62 chr4 129995402 129995498 -54293164 + MLT1L LTR MaLR 183 276 -339 1917 254 91 8 chr4 129996046 129996591 -54292071 - MLT1E LTR MaLR -2 591 1 1696 195 27 40 chr4 129997100 129997470 -54291192 + MLT1A2 LTR MaLR 1 365 -9 602 311 31 51 chr4 129997761 129998018 -54290644 - MIR SINE MIR -10 252 1 191 289 106 68 chr4 130000133 130000368 -54288294 + L2 LINE L2 662 905 -2409 362 291 133 0 chr4 130000554 130000712 -54287950 + MIR SINE MIR 84 262 0 27 29 0 0 chr4 130000837 130000871 -54287791 + AT_rich Low_complexity Low_complexity 1 34 0 776 326 165 22 chr4 130001918 130002851 -54285811 - L2 LINE L2 -4 3309 2245 229 290 194 38 chr4 130002853 130003039 -54285623 - L2 LINE L2 -1274 2040 1826 25 65 0 0 chr4 130003533 130003579 -54285083 + AT_rich Low_complexity Low_complexity 1 46 0 2014 120 3 3 chr4 130004139 130004422 -54284240 - AluSc SINE Alu -18 291 9 2252 65 0 65 chr4 130005597 130005920 -54282742 + AluY SINE Alu 2 303 -8 276 235 0 37 chr4 130005929 130006010 -54282652 + MER116 DNA Mariner 1 78 -2 394 261 67 0 chr4 130006023 130006142 -54282520 + L1MEd LINE L1 42 168 -5951 613 312 86 35 chr4 130006367 130007294 -54281368 + L1MEd LINE L1 501 1526 -4784 304 211 70 0 chr4 130007570 130007641 -54281021 - MLT1G LTR MaLR -500 90 15 1509 273 34 22 chr4 130007691 130008138 -54280524 - LTR16C LTR ERVL 0 491 40 200 200 0 0 chr4 130009004 130009039 -54279623 + (TG)n Simple_repeat Simple_repeat 2 36 0 511 256 75 118 chr4 130009056 130009498 -54279164 - MLT1K LTR MaLR -22 566 144 28 0 0 0 chr4 130010237 130010265 -54278397 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 130011522 130011544 -54277118 + AT_rich Low_complexity Low_complexity 1 22 0 255 79 0 0 chr4 130011905 130011943 -54276719 + (CA)n Simple_repeat Simple_repeat 2 39 0 195 204 0 0 chr4 130012800 130012854 -54275808 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 234 321 72 102 chr4 130012867 130013132 -54275530 - L2 LINE L2 0 3272 3016 399 41 0 0 chr4 130013846 130013895 -54274767 + (TTA)n Simple_repeat Simple_repeat 3 51 0 21 0 0 0 chr4 130013965 130013986 -54274676 + AT_rich Low_complexity Low_complexity 1 21 0 4923 145 8 2 chr4 130014436 130015223 -54273439 + L1PA16 LINE L1 5367 6157 -9 2011 192 51 27 chr4 130015485 130015996 -54272666 - Charlie1b DNA MER1_type 0 523 1 180 0 0 0 chr4 130015996 130016016 -54272646 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1880 143 3 11 chr4 130016025 130016312 -54272350 - AluJo SINE Alu -24 288 4 1204 283 92 26 chr4 130018147 130018645 -54270017 + L2 LINE L2 859 1389 -1925 1931 167 42 7 chr4 130118917 130119306 -54169356 + L1MA9 LINE L1 5450 5854 -312 676 303 65 11 chr4 130119426 130119703 -54168959 - L2 LINE L2 -578 2736 2445 914 230 88 8 chr4 130119705 130119944 -54168718 - MER76 LTR ERV -6 682 425 * 980 243 77 4 chr4 130119942 130120177 -54168485 - MER76 LTR ERV -433 255 4 225 244 81 12 chr4 130120278 130120364 -54168298 - MLT1I LTR MaLR -14 395 304 6897 123 103 128 chr4 130120675 130122418 -54166244 - pTR5 LTR ERV1 0 2438 741 4263 161 50 27 chr4 130122840 130123206 -54165456 + Tigger3(Golem) DNA MER2_type 2160 2516 -512 2212 69 0 0 chr4 130123206 130123468 -54165194 + AluY SINE Alu 39 300 -11 4263 161 50 27 chr4 130123468 130123950 -54164712 + Tigger3(Golem) DNA MER2_type 2516 3027 -1 1949 146 53 8 chr4 130123957 130124314 -54164348 + L1MA8 LINE L1 5919 6291 0 2801 158 5 6 chr4 130124496 130125174 -54163488 - L1P4 LINE L1 -477 5688 5010 1417 211 7 0 chr4 130125174 130125473 -54163189 - L1P LINE L1 -953 5193 4893 2059 202 46 10 chr4 130125473 130125947 -54162715 + LTR22 LTR ERVK 1 458 0 261 348 77 0 chr4 130126202 130126357 -54162305 + MIR SINE MIR 53 219 -43 207 69 0 0 chr4 130126477 130126506 -54162156 + (T)n Simple_repeat Simple_repeat 1 29 0 19888 21 0 0 chr4 130126513 130129580 -54159082 - L1HS LINE L1 -1 6154 3088 7905 25 1 0 chr4 130129580 130130530 -54158132 + L1HS LINE L1 2141 3091 -3055 2173 243 58 92 chr4 130130650 130131487 -54157175 - MER21B LTR ERV1 -54 809 1 1964 162 32 0 chr4 130131604 130131949 -54156713 + MER47A DNA MER2_type 11 366 0 1540 182 24 38 chr4 130132136 130132476 -54156186 + MER1B DNA MER1_type 3 337 0 348 251 163 64 chr4 130132477 130132680 -54155982 - MLT1C LTR MaLR -128 339 133 246 254 16 16 chr4 130132706 130132769 -54155893 - MLT1C LTR MaLR -442 63 1 620 265 164 12 chr4 130132769 130133093 -54155569 - L2 LINE L2 -423 2891 2519 422 266 42 93 chr4 130133567 130133804 -54154858 + Charlie8 DNA MER1_type 9 233 -2184 548 286 66 5 chr4 130133839 130134052 -54154610 - HAL1 LINE L1 -587 1920 1695 1138 275 61 101 chr4 130134109 130134678 -54153984 - MER77 LTR ERV1 -27 578 66 1361 308 79 62 chr4 130134877 130135142 -54153520 - HAL1 LINE L1 -976 1531 1272 2123 137 0 0 chr4 130135142 130135448 -54153214 - AluSx SINE Alu -4 308 3 1361 308 79 62 chr4 130135448 130136181 -54152481 - HAL1 LINE L1 -1235 1272 498 2006 126 3 0 chr4 130136181 130136467 -54152195 + AluSx SINE Alu 1 287 -25 1361 308 79 62 chr4 130136467 130136923 -54151739 - HAL1 LINE L1 -2009 498 51 249 326 53 83 chr4 130137234 130137366 -54151296 - L2 LINE L2 0 3272 3145 446 373 16 5 chr4 130137738 130137923 -54150739 + MIR SINE MIR 34 220 -42 511 263 8 8 chr4 130137940 130138073 -54150589 - LTR33A LTR ERVL -27 496 364 304 279 35 102 chr4 130138147 130138344 -54150318 - LTR33A LTR ERVL -333 190 7 288 0 0 0 chr4 130138544 130138576 -54150086 + (TG)n Simple_repeat Simple_repeat 2 33 0 1052 152 38 11 chr4 130138734 130138968 -54149694 - L1MA5 LINE L1 -14 6289 6048 4253 48 11 2 chr4 130138972 130139510 -54149152 - L1PA4 LINE L1 -3 6152 5610 377 237 0 0 chr4 130139610 130139686 -54148976 + MER2 DNA MER2_type 267 342 -3 333 47 0 0 chr4 130139690 130139733 -54148929 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 205 240 0 60 chr4 130139783 130139833 -54148829 - MIR SINE MIR -138 124 78 418 227 29 34 chr4 130139874 130140028 -54148634 - MLT1G1 LTR MaLR 0 595 407 605 282 81 12 chr4 130140029 130140288 -54148374 + LTR16A1 LTR ERVL 181 457 0 730 235 41 46 chr4 130141802 130141998 -54146664 + MER20 DNA MER1_type 25 219 0 23 54 0 0 chr4 130142610 130142647 -54146015 + AT_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chr4 130143798 130143831 -54144831 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr4 130144481 130144509 -54144153 + AT_rich Low_complexity Low_complexity 1 28 0 1256 148 68 18 chr4 130145979 130146257 -54142405 - MER33 DNA MER1_type 0 324 33 360 205 0 13 chr4 130146484 130146562 -54142100 - LTR54 LTR ERV1 -2 508 432 * 739 304 73 20 chr4 130146541 130146899 -54141763 - MER57B LTR ERV1 -57 377 1 21 0 0 0 chr4 130148185 130148206 -54140456 + AT_rich Low_complexity Low_complexity 1 21 0 214 293 17 0 chr4 130148601 130148659 -54140003 - MIR3 SINE MIR -24 184 126 234 340 64 44 chr4 130148841 130149044 -54139618 + MLT1K LTR MaLR 184 390 -198 21 57 0 0 chr4 130149453 130149488 -54139174 + AT_rich Low_complexity Low_complexity 1 35 0 1927 97 3 24 chr4 130149578 130149867 -54138795 + AluSg SINE Alu 1 283 -27 302 67 22 0 chr4 130149867 130149912 -54138750 + (TA)n Simple_repeat Simple_repeat 2 47 0 429 339 91 14 chr4 130151105 130151326 -54137336 - MIR SINE MIR -14 248 11 22 0 0 0 chr4 130151362 130151384 -54137278 + AT_rich Low_complexity Low_complexity 1 22 0 665 316 102 24 chr4 130151770 130152105 -54136557 - L2 LINE L2 -55 3258 2898 2101 104 3 28 chr4 130152114 130152432 -54136230 + AluSg SINE Alu 1 310 0 1703 167 88 13 chr4 130152439 130152816 -54135846 + L1MA6 LINE L1 5845 6249 -51 4240 123 99 110 chr4 130152819 130154239 -54134423 - pTR5 LTR ERV1 0 2438 743 276 151 0 0 chr4 130154239 130154292 -54134370 + L1MA7 LINE L1 6237 6289 -2 26 0 0 0 chr4 130154294 130154320 -54134342 + AT_rich Low_complexity Low_complexity 1 26 0 367 255 10 10 chr4 130154379 130154477 -54134185 - MLT1C LTR MaLR -16 451 354 1145 219 14 4 chr4 130154595 130154874 -54133788 - L1 LINE L1 -1592 4554 4273 * 2946 164 2 6 chr4 130154872 130155361 -54133301 + L1PA15 LINE L1 5658 6144 -21 28 29 0 0 chr4 130155728 130155763 -54132899 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr4 130155898 130155921 -54132741 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr4 130156255 130156288 -54132374 + AT_rich Low_complexity Low_complexity 1 33 0 7624 28 0 0 chr4 130156301 130157564 -54131098 - L1PA2 LINE L1 0 6155 4893 19357 32 1 0 chr4 130157564 130159917 -54128745 + L1PA2 LINE L1 2555 4909 -1237 351 319 43 29 chr4 130161707 130161914 -54126748 - MIR SINE MIR 0 262 53 353 323 63 0 chr4 130162455 130162582 -54126080 + MIR SINE MIR 17 151 -57 2196 164 10 99 chr4 130163654 130164098 -54124564 - MER65C LTR ERV1 0 461 66 1937 136 0 23 chr4 130164098 130164400 -54124262 - AluSx SINE Alu -17 295 1 2196 164 10 99 chr4 130164400 130164461 -54124201 - MER65C LTR ERV1 -395 66 1 188 250 50 50 chr4 130166375 130166455 -54122207 - L2 LINE L2 -5 3267 3188 528 324 103 32 chr4 130166493 130166870 -54121792 + MLT1I LTR MaLR 6 409 0 277 165 87 0 chr4 130166927 130167030 -54121632 + (TA)n Simple_repeat Simple_repeat 2 113 0 195 305 49 61 chr4 130167734 130167816 -54120846 - MER5B DNA MER1_type -53 125 45 1645 168 199 36 chr4 130167966 130168005 -54120657 - MLT2B1 LTR ERVL 0 520 489 375 23 0 0 chr4 130168005 130168049 -54120613 + (TG)n Simple_repeat Simple_repeat 1 44 0 1645 168 199 36 chr4 130168049 130168456 -54120206 - MLT2B1 LTR ERVL -31 489 1 200 116 47 23 chr4 130169233 130169276 -54119386 + A-rich Low_complexity Low_complexity 2 45 0 648 240 68 0 chr4 130172824 130172970 -54115692 - MER45A DNA AcHobo -22 156 1 1735 178 0 3 chr4 130173176 130173468 -54115194 - AluJb SINE Alu -21 291 1 2039 126 0 0 chr4 130174404 130174729 -54113933 + AluY SINE Alu 1 325 0 24 32 0 0 chr4 130175703 130175734 -54112928 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr4 130177545 130177569 -54111093 + AT_rich Low_complexity Low_complexity 1 24 0 260 367 65 65 chr4 130179662 130179910 -54108752 - L2 LINE L2 -47 3225 2978 301 304 0 0 chr4 130180254 130180323 -54108339 - MER5B DNA MER1_type -27 151 83 202 143 16 79 chr4 130181536 130181599 -54107063 + T-rich Low_complexity Low_complexity 1 59 0 231 341 0 0 chr4 130181682 130181764 -54106898 + L2 LINE L2 1879 1960 -1354 588 127 45 0 chr4 130181764 130181874 -54106788 - L1M1 LINE L1 -860 5443 5329 191 389 17 17 chr4 130181875 130182050 -54106612 + L2 LINE L2 2467 2641 -673 215 338 49 14 chr4 130182217 130182359 -54106303 + L2 LINE L2 3165 3311 -2 284 302 183 16 chr4 130183343 130183469 -54105193 - MIR SINE MIR -114 148 2 260 363 0 22 chr4 130183718 130183809 -54104853 - L2 LINE L2 -62 3210 3122 1270 217 195 7 chr4 130184185 130184600 -54104062 - LTR54B LTR ERV1 -5 493 1 258 32 0 0 chr4 130184655 130184686 -54103976 + (TG)n Simple_repeat Simple_repeat 2 32 0 180 229 0 114 chr4 130184748 130184818 -54103844 - L2 LINE L2 -1 3312 3251 575 197 98 0 chr4 130185011 130185133 -54103529 + MER3 DNA MER1_type 53 186 -23 564 279 96 89 chr4 130185844 130186303 -54102359 - L2 LINE L2 0 3313 2852 269 343 46 19 chr4 130186742 130186850 -54101812 - MIR3 SINE MIR -41 167 57 600 316 47 5 chr4 130186871 130187087 -54101575 - MIR SINE MIR -4 258 37 471 73 29 0 chr4 130187253 130187321 -54101341 + LTR8A LTR ERV1 1 70 -657 2791 185 37 66 chr4 130187424 130188106 -54100556 + LTR8 LTR ERV1 30 691 0 2116 111 0 20 chr4 130190090 130190388 -54098274 - AluSx SINE Alu -20 292 1 207 267 0 17 chr4 130190923 130190983 -54097679 - L2 LINE L2 -231 3041 2983 1835 208 77 25 chr4 130191067 130191547 -54097115 + MLT1D LTR MaLR 1 505 0 193 343 210 0 chr4 130192073 130192216 -54096446 - L2 LINE L2 -843 2471 2299 17048 192 31 9 chr4 130192247 130194844 -54093818 + L1M1 LINE L1 22 2705 -4860 2124 106 27 3 chr4 130194844 130195137 -54093525 + AluSq SINE Alu 1 300 -13 17048 192 31 9 chr4 130195137 130195743 -54092919 + L1M1 LINE L1 2705 3296 -4269 276 150 0 0 chr4 130195744 130195802 -54092860 - FLAM_A SINE Alu 0 133 85 2741 176 16 42 chr4 130195802 130196496 -54092166 + L1MA4A LINE L1 5544 6280 -23 327 250 12 24 chr4 130196521 130196605 -54092057 + MIR SINE MIR 180 262 0 2177 113 0 0 chr4 130196628 130196919 -54091743 + AluSx SINE Alu 3 293 -19 26 0 0 0 chr4 130196919 130196945 -54091717 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr4 130197954 130197984 -54090678 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 130198521 130198542 -54090120 + AT_rich Low_complexity Low_complexity 1 21 0 1383 208 3 21 chr4 130199045 130199329 -54089333 + AluJb SINE Alu 1 279 -33 39 60 0 0 chr4 130200243 130200310 -54088352 + AT_rich Low_complexity Low_complexity 1 67 0 234 0 0 0 chr4 130200370 130200396 -54088266 + (TA)n Simple_repeat Simple_repeat 2 27 0 235 284 23 45 chr4 130203486 130203574 -54085088 - MIR3 SINE MIR -15 193 108 21 0 0 0 chr4 130204223 130204244 -54084418 + AT_rich Low_complexity Low_complexity 1 21 0 42519 56 3 2 chr4 130204765 130210283 -54078379 - L1P2 LINE L1 -630 5525 3 338 202 3 11 chr4 130210285 130210379 -54078283 - L1MA5 LINE L1 -254 6046 5951 197 309 0 18 chr4 130210597 130210652 -54078010 + L2 LINE L2 3215 3268 -4 1923 115 43 0 chr4 130211171 130211449 -54077213 - AluSp SINE Alu -23 290 1 24 53 0 0 chr4 130212278 130212316 -54076346 + AT_rich Low_complexity Low_complexity 1 38 0 185 294 65 43 chr4 130213221 130213313 -54075349 - L3 LINE CR1 -813 764 671 30 45 0 0 chr4 130213372 130213416 -54075246 + AT_rich Low_complexity Low_complexity 1 44 0 222 37 0 0 chr4 130213718 130213745 -54074917 + (TATG)n Simple_repeat Simple_repeat 2 28 0 28 0 0 0 chr4 130213818 130213846 -54074816 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr4 130213990 130214014 -54074648 + AT_rich Low_complexity Low_complexity 1 24 0 7881 81 5 14 chr4 130214499 130215580 -54073082 + MER11C LTR ERVK 1 1071 0 1297 176 11 75 chr4 130216634 130216913 -54071749 - AluJb SINE Alu -17 295 35 211 306 92 10 chr4 130217255 130217353 -54071309 + L3 LINE CR1 1294 1399 -178 1380 231 52 48 chr4 130217580 130218038 -54070624 + MER65C LTR ERV1 2 461 0 295 303 0 11 chr4 130220422 130220511 -54068151 + MER65C-int LTR ERV1 158 245 -4402 38 61 0 0 chr4 130220519 130220585 -54068077 + AT_rich Low_complexity Low_complexity 1 66 0 1544 151 66 79 chr4 130222824 130223032 -54065630 + THE1C LTR MaLR 3 212 -163 2262 115 0 6 chr4 130223032 130223344 -54065318 - AluY SINE Alu -1 310 1 453 19 0 0 chr4 130223351 130223405 -54065257 + (TG)n Simple_repeat Simple_repeat 1 54 0 1544 151 66 79 chr4 130223405 130223566 -54065096 + THE1C LTR MaLR 218 375 0 1998 109 3 25 chr4 130223674 130223957 -54064705 + AluSx SINE Alu 1 277 -35 243 0 0 0 chr4 130223959 130223986 -54064676 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr4 130224545 130224567 -54064095 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr4 130224857 130224893 -54063769 + AT_rich Low_complexity Low_complexity 1 36 0 950 317 70 30 chr4 130225091 130226074 -54062588 + MER65C-int LTR ERV1 4209 4871 0 1649 207 37 46 chr4 130226074 130226528 -54062134 + MER65C LTR ERV1 1 450 -11 189 107 0 0 chr4 130227225 130227253 -54061409 + (T)n Simple_repeat Simple_repeat 1 28 0 7616 20 8 1 chr4 130227254 130228904 -54059758 - L1PA3 LINE L1 0 6155 4506 1343 249 123 28 chr4 130229654 130230124 -54058538 - LTR40a LTR ERVL -2 517 3 21 0 0 0 chr4 130230150 130230171 -54058491 + AT_rich Low_complexity Low_complexity 1 21 0 317 349 118 44 chr4 130230222 130230856 -54057806 + L2 LINE L2 2464 3179 -93 432 245 64 78 chr4 130231724 130231783 -54056879 - MIR SINE MIR 0 262 204 494 16 16 0 chr4 130231783 130231846 -54056816 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 432 245 64 78 chr4 130231846 130231990 -54056672 - MIR SINE MIR -58 204 62 21 0 0 0 chr4 130233068 130233089 -54055573 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 130233550 130233572 -54055090 + AT_rich Low_complexity Low_complexity 1 22 0 3030 179 42 20 chr4 130233576 130234168 -54054494 + MER6A DNA MER2_type 1 605 0 952 304 88 30 chr4 130234220 130234684 -54053978 - L2 LINE L2 -2 3311 2821 1789 259 62 20 chr4 130234732 130235377 -54053285 - L1ME3 LINE L1 -68 6094 5423 183 224 17 35 chr4 130235627 130235685 -54052977 - L2 LINE L2 -568 2746 2690 2158 106 62 11 chr4 130236964 130237321 -54051341 - THE1C LTR MaLR 0 375 1 884 191 11 5 chr4 130237699 130237888 -54050774 - L1MC3 LINE L1 0 7785 7596 599 195 78 66 chr4 130237988 130238578 -54050084 - L1MC3 LINE L1 -336 7449 6621 303 300 56 62 chr4 130239208 130239368 -54049294 - L1ME LINE L1 -5888 182 24 33 80 0 0 chr4 130240063 130240138 -54048524 + AT_rich Low_complexity Low_complexity 1 75 0 201 280 0 0 chr4 130240998 130241048 -54047614 - L3 LINE CR1 -1 1576 1527 483 243 71 63 chr4 130242224 130242463 -54046199 + L2 LINE L2 3073 3313 0 22 0 0 0 chr4 130242466 130242488 -54046174 + AT_rich Low_complexity Low_complexity 1 22 0 264 252 16 16 chr4 130243109 130243232 -54045430 + (TA)n Simple_repeat Simple_repeat 2 124 0 1798 153 0 4 chr4 130245111 130245392 -54043270 - AluJb SINE Alu -12 300 21 326 345 27 0 chr4 130246782 130246892 -54041770 - MIR3 SINE MIR -6 202 90 329 224 0 61 chr4 130247021 130247119 -54041543 - LTR33A LTR ERVL -6 517 426 243 0 0 0 chr4 130247161 130247188 -54041474 + (A)n Simple_repeat Simple_repeat 1 27 0 4155 115 55 1 chr4 130248650 130249303 -54039359 + LTR12 LTR ERV1 1 688 0 2008 136 3 3 chr4 130249363 130249657 -54039005 - AluSq SINE Alu -10 303 10 226 176 20 0 chr4 130252211 130252262 -54036400 + (TA)n Simple_repeat Simple_repeat 2 53 0 23 33 0 0 chr4 130252361 130252391 -54036271 + AT_rich Low_complexity Low_complexity 1 30 0 3419 178 18 6 chr4 130253885 130254543 -54034119 - L1PB4 LINE L1 -3 6153 5488 2135 233 14 8 chr4 130254543 130255063 -54033599 + L1 LINE L1 4549 5071 -1075 493 110 0 0 chr4 130255067 130255140 -54033522 + L1P5 LINE L1 5418 5490 -666 1925 140 7 0 chr4 130255579 130255872 -54032790 + AluSg SINE Alu 1 295 -15 1661 178 0 7 chr4 130256121 130256425 -54032237 + AluJb SINE Alu 1 302 -10 334 320 56 0 chr4 130256616 130256741 -54031921 + MER94 DNA DNA 3 134 0 190 323 11 32 chr4 130259103 130259196 -54029466 + L2 LINE L2 3188 3278 -35 237 371 75 26 chr4 130259355 130259662 -54029000 - L2 LINE L2 -665 2649 2328 717 321 145 40 chr4 130261624 130262246 -54026416 - L2 LINE L2 -351 2963 2277 1202 153 44 25 chr4 130262560 130262834 -54025828 - L1MA8 LINE L1 -1 6290 6012 1724 145 0 0 chr4 130262834 130263116 -54025546 + L1M2 LINE L1 5288 5569 -722 * 5700 153 24 46 chr4 130263108 130264346 -54024316 - L1MA8 LINE L1 -285 6015 4752 234 0 0 0 chr4 130264346 130264372 -54024290 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1919 142 3 0 chr4 130264375 130264657 -54024005 - AluSx SINE Alu -29 283 1 5700 153 24 46 chr4 130264657 130265237 -54023425 - L1MA8 LINE L1 -1550 4750 4238 1933 80 0 104 chr4 130265237 130265563 -54023099 + AluY SINE Alu 1 292 -19 5700 153 24 46 chr4 130265563 130265685 -54022977 - L1MA8 LINE L1 -2062 4238 4115 917 299 86 15 chr4 130266736 130267241 -54021421 + MLT2E LTR ERVL 44 613 -15 224 310 0 0 chr4 130267794 130267865 -54020797 + (CA)n Simple_repeat Simple_repeat 1 71 0 209 179 0 0 chr4 130270056 130270095 -54018567 + (TG)n Simple_repeat Simple_repeat 2 40 0 768 242 11 21 chr4 130270363 130270549 -54018113 + MER5A DNA MER1_type 4 187 -2 29 0 0 0 chr4 130270655 130270684 -54017978 + AT_rich Low_complexity Low_complexity 1 29 0 2181 92 3 20 chr4 130271845 130272151 -54016511 - AluSc SINE Alu -8 301 1 454 365 40 31 chr4 130272398 130272749 -54015913 - HAL1b LINE L1 -533 815 462 291 214 0 0 chr4 130273928 130273998 -54014664 + (TATATG)n Simple_repeat Simple_repeat 1 70 0 272 349 16 16 chr4 130274421 130274547 -54014115 - MLT1L LTR MaLR -414 201 76 204 196 59 0 chr4 130274797 130274848 -54013814 + MIR SINE MIR 117 170 -92 22 35 0 0 chr4 130275069 130275098 -54013564 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr4 130275417 130275448 -54013214 + AT_rich Low_complexity Low_complexity 1 31 0 1485 176 0 25 chr4 130275528 130275806 -54012856 - AluJb SINE Alu 0 312 42 8206 183 38 18 chr4 130276155 130278539 -54010123 + L1PB4 LINE L1 3352 5795 -361 252 86 0 0 chr4 130278539 130278574 -54010088 + (TG)n Simple_repeat Simple_repeat 2 36 0 8206 183 38 18 chr4 130278574 130278943 -54009719 + L1PB4 LINE L1 5795 6155 -1 366 341 44 31 chr4 130278967 130279193 -54009469 + L1M4 LINE L1 10 238 -6304 339 113 0 0 chr4 130279293 130279346 -54009316 + (CA)n Simple_repeat Simple_repeat 2 54 0 593 181 0 0 chr4 130279466 130279582 -54009080 + AluSq/x SINE Alu 1 116 -197 216 200 0 0 chr4 130279592 130279647 -54009015 + (TA)n Simple_repeat Simple_repeat 2 56 0 913 9 0 0 chr4 130280172 130280278 -54008384 + AluY SINE Alu 206 311 0 1866 130 3 26 chr4 130280642 130280949 -54007713 + AluSx SINE Alu 1 300 -12 272 336 86 0 chr4 130281518 130281634 -54007028 + L2 LINE L2 3162 3287 -26 26 50 0 0 chr4 130282776 130282816 -54005846 + AT_rich Low_complexity Low_complexity 1 40 0 31 26 0 0 chr4 130283550 130283588 -54005074 + AT_rich Low_complexity Low_complexity 1 38 0 201 178 0 0 chr4 130284055 130284100 -54004562 + T-rich Low_complexity Low_complexity 1 45 0 870 243 5 5 chr4 130284741 130284955 -54003707 - L1MC4 LINE L1 -490 7552 7339 476 256 8 0 chr4 130286124 130286241 -54002421 - MER94 DNA DNA -16 118 1 644 331 77 12 chr4 130286241 130286564 -54002098 + L3 LINE CR1 1227 1570 -7 272 334 39 25 chr4 130286662 130286808 -54001854 - MIR SINE MIR -45 163 15 193 245 19 0 chr4 130286866 130286919 -54001743 - MIR SINE MIR -14 248 195 1412 194 14 3 chr4 130286956 130287240 -54001422 + AluJb SINE Alu 21 307 -5 216 0 0 0 chr4 130287240 130287264 -54001398 + (GA)n Simple_repeat Simple_repeat 1 24 0 764 88 9 0 chr4 130287265 130287379 -54001283 + (GGGAA)n Simple_repeat Simple_repeat 3 117 0 5508 228 98 32 chr4 130287701 130288508 -54000154 + MER52A LTR ERV1 47 799 -956 4355 116 45 12 chr4 130288508 130289174 -53999488 - LTR12 LTR ERV1 0 688 1 5508 228 98 32 chr4 130289174 130289969 -53998693 + MER52A LTR ERV1 799 1755 0 426 290 35 47 chr4 130290015 130290184 -53998478 - MLT1K LTR MaLR -107 481 315 1192 220 17 4 chr4 130290414 130290650 -53998012 - MER8 DNA MER2_type 0 239 1 201 94 0 0 chr4 130291217 130291249 -53997413 + (TA)n Simple_repeat Simple_repeat 2 33 0 23 54 0 0 chr4 130291268 130291305 -53997357 + AT_rich Low_complexity Low_complexity 1 37 0 637 235 96 53 chr4 130291881 130292162 -53996500 - L1MCc LINE L1 -4943 1480 1188 1086 202 210 33 chr4 130292341 130292703 -53995959 + MSTC LTR MaLR 1 426 -2 21 82 0 0 chr4 130292858 130292907 -53995755 + AT_rich Low_complexity Low_complexity 1 49 0 2816 175 147 100 chr4 130292956 130293364 -53995298 + L1MC3 LINE L1 6685 7072 -713 232 325 0 0 chr4 130293364 130293441 -53995221 + MLT1F1 LTR MaLR 31 107 -460 2816 175 147 100 chr4 130293441 130293917 -53994745 + L1MC3 LINE L1 7072 7690 -95 2302 82 10 0 chr4 130293964 130294267 -53994395 - AluY SINE Alu -5 306 1 401 261 45 56 chr4 130294283 130294551 -53994111 + L1ME3A LINE L1 949 1213 -4906 329 283 44 31 chr4 130294619 130294845 -53993817 + L1ME3A LINE L1 1334 1562 -4748 3938 224 60 6 chr4 130294942 130295932 -53992730 + L1PB1 LINE L1 6 1048 -5815 465 161 0 12 chr4 130295933 130296014 -53992648 + L1PB1 LINE L1 1093 1172 -5691 2124 223 47 23 chr4 130296016 130296223 -53992439 + L1PB1 LINE L1 1329 1529 -5338 1741 126 80 8 chr4 130296223 130296485 -53992177 + AluSg SINE Alu 6 286 -24 195 69 0 0 chr4 130296489 130296518 -53992144 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 2124 223 47 23 chr4 130296518 130301160 -53987502 + L1PB1 LINE L1 1531 6508 -359 213 121 0 0 chr4 130301163 130301196 -53987466 + (TATATG)n Simple_repeat Simple_repeat 6 38 0 235 152 0 0 chr4 130301200 130301246 -53987416 + LTR66 LTR ERVL 394 439 -171 2426 124 0 3 chr4 130301251 130301622 -53987040 + L1PB1 LINE L1 6498 6867 0 265 348 65 0 chr4 130302196 130302334 -53986328 + LTR52 LTR ERVL 270 416 -5 351 295 126 24 chr4 130302544 130302751 -53985911 + L1ME3A LINE L1 2022 2249 -4061 352 300 95 18 chr4 130302965 130303238 -53985424 + L1ME3A LINE L1 2419 2712 -3417 1463 204 70 57 chr4 130303248 130303281 -53985381 - MLT2D LTR ERVL -8 406 375 228 67 0 0 chr4 130303281 130303311 -53985351 + (TATG)n Simple_repeat Simple_repeat 3 32 0 1463 204 70 57 chr4 130303311 130303678 -53984984 - MLT2D LTR ERVL -39 375 1 408 318 83 8 chr4 130303681 130303945 -53984717 + L1ME3A LINE L1 2717 3000 -3129 434 313 95 9 chr4 130303986 130304197 -53984465 + LTR16A LTR ERVL 221 449 -1 716 291 94 33 chr4 130304198 130304686 -53983976 + L1ME3A LINE L1 5573 6090 -63 481 329 94 7 chr4 130304743 130305020 -53983642 + L2 LINE L2 3005 3305 -8 22 0 0 0 chr4 130305745 130305767 -53982895 + AT_rich Low_complexity Low_complexity 1 22 0 1242 278 115 48 chr4 130306138 130307204 -53981458 - HAL1 LINE L1 0 2507 1370 753 180 5 99 chr4 130307244 130307455 -53981207 - L1MA9 LINE L1 -3 6309 6119 303 335 70 47 chr4 130307466 130307723 -53980939 - HAL1 LINE L1 -1254 1253 991 3592 174 10 4 chr4 130307749 130308474 -53980188 - L1MC2 LINE L1 -447 5897 5166 229 223 39 29 chr4 130308535 130308638 -53980024 + (TA)n Simple_repeat Simple_repeat 2 105 0 1578 237 99 49 chr4 130309321 130309959 -53978703 - MER97c DNA MER1_type? -420 670 1 262 380 33 0 chr4 130310382 130310503 -53978159 + L3 LINE CR1 369 493 -1084 585 357 56 36 chr4 130311487 130311955 -53976707 + L1MA4 LINE L1 504 980 -5799 2113 270 33 39 chr4 130312433 130313557 -53975105 + L1MA4 LINE L1 1611 2689 -4160 846 89 81 0 chr4 130313629 130313753 -53974909 + MER85 DNA T2_type 1 134 -5 4654 173 32 129 chr4 130313803 130314351 -53974311 + L1MA4 LINE L1 3740 4339 -2509 1106 110 6 0 chr4 130314351 130314515 -53974147 - L1PA7 LINE L1 -3 6151 5987 4654 173 32 129 chr4 130314515 130315444 -53973218 + L1MA4 LINE L1 4339 5075 -1773 5303 182 41 2 chr4 130315453 130316767 -53971895 + L1MA4 LINE L1 5587 6995 -7 1244 188 39 39 chr4 130316818 130317136 -53971526 - AluJo SINE Alu 0 320 3 2966 93 21 2 chr4 130317226 130317656 -53971006 - L1PA10 LINE L1 -3 6165 5728 344 364 68 32 chr4 130317882 130318162 -53970500 + L2 LINE L2 2220 2509 -805 2278 97 13 0 chr4 130320245 130320545 -53968117 + AluSg SINE Alu 1 304 -6 254 264 132 38 chr4 130320650 130320756 -53967906 + MER5A DNA MER1_type 49 164 -25 511 294 99 86 chr4 130320976 130321429 -53967233 - MLT1L LTR MaLR 0 615 157 27 29 0 0 chr4 130321593 130321627 -53967035 + AT_rich Low_complexity Low_complexity 1 34 0 1316 216 248 64 chr4 130321736 130322204 -53966458 + MLT2B1 LTR ERVL 1 554 0 2248 127 24 3 chr4 130322433 130322752 -53965910 + MER41A LTR ERV1 3 380 -174 6007 141 10 21 chr4 130322752 130323721 -53964941 + L1PA7 LINE L1 5191 6149 -5 2248 127 24 3 chr4 130323721 130323900 -53964762 + MER41A LTR ERV1 380 554 0 2347 87 3 3 chr4 130324306 130324606 -53964056 + AluSc SINE Alu 1 300 -9 588 300 195 48 chr4 130324624 130324832 -53963830 + L2 LINE L2 2452 2628 -685 360 0 0 0 chr4 130324832 130324872 -53963790 + (CA)n Simple_repeat Simple_repeat 2 41 0 588 300 195 48 chr4 130324872 130325213 -53963449 + L2 LINE L2 2628 3081 -232 2210 96 3 0 chr4 130325355 130325660 -53963002 - AluSp SINE Alu 0 306 1 670 150 55 8 chr4 130325932 130326059 -53962603 - L1MA3 LINE L1 -98 6207 6075 218 301 146 16 chr4 130326184 130326307 -53962355 - MIR SINE MIR -74 188 50 544 124 0 29 chr4 130326713 130326818 -53961844 + L1MA5A LINE L1 6191 6292 -5 336 272 18 26 chr4 130327272 130327386 -53961276 + MER69 DNA AcHobo 1 113 -2413 433 250 50 0 chr4 130328188 130328308 -53960354 + MER3 DNA MER1_type 80 205 -4 264 311 42 67 chr4 130328765 130328958 -53959704 + MIR SINE MIR 47 234 -28 39 80 0 0 chr4 130329210 130329298 -53959364 + AT_rich Low_complexity Low_complexity 1 88 0 214 286 104 13 chr4 130330233 130330310 -53958352 + L2 LINE L2 2658 2741 -573 722 326 171 25 chr4 130330398 130331078 -53957584 + L2 LINE L2 1687 2465 -849 259 319 21 11 chr4 130331414 130331508 -53957154 - MIR SINE MIR -71 191 97 785 228 14 41 chr4 130335020 130335239 -53953423 + MER96B DNA MER1_type? 25 237 -180 360 268 210 6 chr4 130336086 130336243 -53952419 + MER5A DNA MER1_type 1 189 0 557 258 53 13 chr4 130336675 130336826 -53951836 - MER63A DNA MER1_type 0 210 54 367 258 11 0 chr4 130337183 130337276 -53951386 - L2 LINE L2 0 3313 3220 411 343 56 34 chr4 130337861 130338094 -53950568 + MIR SINE MIR 20 257 -5 5065 128 13 5 chr4 130338905 130339696 -53948966 + L1PB2 LINE L1 5355 6151 0 22 56 0 0 chr4 130339790 130339826 -53948836 + AT_rich Low_complexity Low_complexity 1 36 0 794 278 19 14 chr4 130340802 130341011 -53947651 - MIR SINE MIR -27 235 26 270 141 30 5 chr4 130343326 130343524 -53945138 + AluSp SINE Alu 1 295 -7 21 0 0 0 chr4 130344693 130344714 -53943948 + AT_rich Low_complexity Low_complexity 1 21 0 185 83 28 0 chr4 130345382 130345418 -53943244 + (TTTTA)n Simple_repeat Simple_repeat 1 37 0 6491 77 8 15 chr4 130345418 130346792 -53941870 - L1PA6 LINE L1 -24 6130 4762 203 369 0 0 chr4 130349254 130349338 -53939324 + L2 LINE L2 3226 3309 -4 21 0 0 0 chr4 130351696 130351717 -53936945 + AT_rich Low_complexity Low_complexity 1 21 0 2234 95 10 7 chr4 130352066 130352372 -53936290 + AluSc SINE Alu 1 307 -2 653 291 41 0 chr4 130353620 130353792 -53934870 + MIR SINE MIR 11 189 -73 260 326 43 36 chr4 130353925 130354063 -53934599 + L2 LINE L2 3175 3313 0 227 211 0 28 chr4 130354100 130354171 -53934491 + (CATATA)n Simple_repeat Simple_repeat 6 74 0 12297 210 44 47 chr4 130355708 130356496 -53932166 - L1MA4 LINE L1 -225 7096 6307 1758 191 0 3 chr4 130356496 130356799 -53931863 - AluJb SINE Alu -10 302 1 12297 210 44 47 chr4 130356799 130360591 -53928071 - L1MA4 LINE L1 -1014 6307 2510 2053 121 10 0 chr4 130360591 130360881 -53927781 - AluSq SINE Alu -20 293 1 12297 210 44 47 chr4 130360881 130363382 -53925280 - L1MA4 LINE L1 -4811 2510 3 24 67 0 0 chr4 130363838 130363883 -53924779 + AT_rich Low_complexity Low_complexity 1 45 0 2002 131 50 0 chr4 130364522 130364819 -53923843 + AluSx SINE Alu 1 312 0 3247 123 36 4 chr4 130365326 130365821 -53922841 + MER9 LTR ERVK 1 511 0 1586 173 83 0 chr4 130366275 130366576 -53922086 - Tigger2a DNA MER2_type -108 326 1 324 224 75 19 chr4 130366576 130366682 -53921980 - MER53 DNA DNA -76 113 2 353 370 17 6 chr4 130366687 130366860 -53921802 - ERVL LTR ERVL -544 5220 5046 2001 293 54 5 chr4 130367096 130367727 -53920935 - ERVL LTR ERVL -952 4812 4151 525 264 21 21 chr4 130368337 130368477 -53920185 + MIR SINE MIR 25 164 -98 4163 233 35 25 chr4 130368479 130369347 -53919315 - MER45B DNA AcHobo -542 1039 158 2025 162 28 0 chr4 130369347 130369699 -53918963 - THE1B LTR MaLR -2 362 1 4163 233 35 25 chr4 130369699 130369855 -53918807 - MER45B DNA AcHobo -1423 158 5 303 314 29 10 chr4 130369859 130369961 -53918701 + MIR SINE MIR 159 262 0 193 318 34 0 chr4 130370309 130370397 -53918265 + MIR SINE MIR 123 213 -49 2279 82 0 0 chr4 130370408 130370701 -53917961 - AluY SINE Alu -17 294 2 21 0 0 0 chr4 130371509 130371530 -53917132 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr4 130371587 130371618 -53917044 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr4 130371746 130371768 -53916894 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr4 130372131 130372174 -53916488 + AT_rich Low_complexity Low_complexity 1 43 0 308 83 21 0 chr4 130372234 130372282 -53916380 + (GA)n Simple_repeat Simple_repeat 1 49 0 441 304 152 18 chr4 130373547 130373773 -53914889 + MIR SINE MIR 11 262 0 1524 143 0 46 chr4 130373811 130374091 -53914571 + MER34B LTR ERV1 4 270 -295 2895 154 7 63 chr4 130374098 130374697 -53913965 - MER34B LTR ERV1 0 565 1 453 317 135 47 chr4 130375205 130375568 -53913094 + MLT1I LTR MaLR 11 405 -4 859 118 7 22 chr4 130375635 130375771 -53912891 - THE1C LTR MaLR 0 375 242 274 156 22 0 chr4 130375795 130375840 -53912822 - THE1-int LTR MaLR -903 677 632 2232 152 9 0 chr4 130375840 130376188 -53912474 + THE1B LTR MaLR 14 364 0 1106 166 31 27 chr4 130376193 130376416 -53912246 - THE1C LTR MaLR -151 224 1 7807 155 35 41 chr4 130376416 130378005 -53910657 - THE1C-int LTR MaLR 0 1580 1 1823 138 58 22 chr4 130378005 130378367 -53910295 - THE1C LTR MaLR 0 375 1 1417 171 69 43 chr4 130378792 130378953 -53909709 - AluJb SINE Alu 0 312 157 246 32 0 0 chr4 130378953 130378984 -53909678 + (TA)n Simple_repeat Simple_repeat 2 32 0 1417 171 69 43 chr4 130378984 130379126 -53909536 - AluJb SINE Alu -155 157 1 24 53 0 0 chr4 130379128 130379166 -53909496 + AT_rich Low_complexity Low_complexity 1 38 0 249 139 0 0 chr4 130379802 130379845 -53908817 + (CA)n Simple_repeat Simple_repeat 2 44 0 24 32 0 0 chr4 130380017 130380048 -53908614 + AT_rich Low_complexity Low_complexity 1 31 0 224 96 56 67 chr4 130380269 130380447 -53908215 + (TA)n Simple_repeat Simple_repeat 2 177 0 2385 281 115 8 chr4 130380786 130381575 -53907087 + L1MC/D LINE L1 409 1282 -5127 4809 231 45 37 chr4 130381593 130383160 -53905502 + L1MC/D LINE L1 3861 5436 -1176 2093 106 3 0 chr4 130383160 130383444 -53905218 + AluSp SINE Alu 16 300 -13 4809 231 45 37 chr4 130383444 130383882 -53904780 + L1MC/D LINE L1 5436 5869 -743 2159 120 3 3 chr4 130584165 130584507 -53704155 + AluSc SINE Alu 1 342 0 966 226 9 5 chr4 130585280 130585497 -53703165 + MER20 DNA MER1_type 2 219 0 24 53 0 0 chr4 130586123 130586161 -53702501 + AT_rich Low_complexity Low_complexity 1 38 0 29 28 0 0 chr4 130586203 130586239 -53702423 + AT_rich Low_complexity Low_complexity 1 36 0 2176 79 3 35 chr4 130586353 130586671 -53701991 - AluY SINE Alu -3 308 1 2208 56 3 36 chr4 130587057 130587360 -53701302 - AluY SINE Alu -18 293 1 270 0 0 0 chr4 130587632 130587662 -53701000 + (TG)n Simple_repeat Simple_repeat 2 31 0 637 243 23 57 chr4 130587943 130588120 -53700542 + MER97b DNA MER1_type? 9 179 -874 251 113 56 14 chr4 130588395 130588466 -53700196 + (TGAA)n Simple_repeat Simple_repeat 3 76 0 186 94 19 57 chr4 130589080 130589133 -53699529 + (TTTTTG)n Simple_repeat Simple_repeat 4 54 0 429 318 61 53 chr4 130589214 130589478 -53699184 - MLT1L LTR MaLR -349 266 1 381 58 0 0 chr4 130590644 130590696 -53697966 + (CCCTG)n Simple_repeat Simple_repeat 4 55 0 403 193 9 18 chr4 130590697 130590806 -53697856 + CT-rich Low_complexity Low_complexity 3 110 0 2524 158 37 4 chr4 130591222 130591683 -53696979 + MER31A LTR ERV1 10 485 0 192 404 70 0 chr4 130591692 130591848 -53696814 - MIR3 SINE MIR -1 207 41 253 267 81 23 chr4 130593084 130593170 -53695492 + MIR SINE MIR 117 207 -55 330 343 164 25 chr4 130593255 130593608 -53695054 - L3 LINE CR1 -733 844 443 367 364 32 20 chr4 130594365 130594615 -53694047 + HAL1 LINE L1 1273 1525 -982 207 0 0 0 chr4 130594808 130594831 -53693831 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 450 0 0 0 chr4 130595163 130595213 -53693449 + (TA)n Simple_repeat Simple_repeat 1 50 0 243 0 0 0 chr4 130595515 130595542 -53693120 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 553 306 61 18 chr4 130595656 130595885 -53692777 - MLT1J2 LTR MaLR -206 244 6 972 175 42 0 chr4 130596334 130596500 -53692162 - MLT1C LTR MaLR -291 176 4 300 330 19 0 chr4 130597194 130597297 -53691365 - MLT1J2 LTR MaLR 0 450 346 373 300 79 26 chr4 130597388 130597578 -53691084 - MLT1J2 LTR MaLR -244 206 7 289 309 127 46 chr4 130597736 130598043 -53690619 + HAL1 LINE L1 2176 2507 0 961 231 127 47 chr4 130598679 130599017 -53689645 + MLT1A1 LTR MaLR 1 365 0 2087 123 0 43 chr4 130599079 130599258 -53689404 - AluSx SINE Alu 0 312 152 1814 140 4 4 chr4 130599258 130599537 -53689125 - AluSx SINE Alu -23 289 11 2087 123 0 43 chr4 130599537 130599682 -53688980 - AluSx SINE Alu -160 152 2 2172 109 0 0 chr4 130600596 130600889 -53687773 - AluSx SINE Alu -19 293 1 338 224 84 9 chr4 130601602 130601709 -53686953 - MIR SINE MIR -44 218 104 801 291 29 12 chr4 130601733 130601977 -53686685 + MLT1E2 LTR MaLR 1 248 -378 231 227 0 0 chr4 130602289 130602355 -53686307 + (TA)n Simple_repeat Simple_repeat 1 66 0 243 236 0 0 chr4 130602356 130602411 -53686251 + GA-rich Low_complexity Low_complexity 2 56 0 22 0 0 0 chr4 130602770 130602792 -53685870 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 130603049 130603072 -53685590 + AT_rich Low_complexity Low_complexity 1 23 0 29 18 0 55 chr4 130603493 130603548 -53685114 + AT_rich Low_complexity Low_complexity 1 52 0 192 152 0 0 chr4 130603548 130603581 -53685081 + (TG)n Simple_repeat Simple_repeat 2 34 0 2382 139 31 0 chr4 130603601 130603990 -53684672 - MER57A LTR ERV1 0 403 3 269 153 0 17 chr4 130603996 130604055 -53684607 + (TA)n Simple_repeat Simple_repeat 1 58 0 1483 180 80 25 chr4 130604083 130604410 -53684252 - MLT2C1 LTR ERVL -48 349 5 403 301 24 0 chr4 130606291 130606414 -53682248 - LTR16A1 LTR ERVL 0 457 332 589 286 132 56 chr4 130606426 130606804 -53681858 - MLT1H LTR MaLR -3 546 140 2918 156 35 80 chr4 130606806 130607530 -53681132 - LTR8 LTR ERV1 0 691 1 3831 158 53 10 chr4 130607776 130608458 -53680204 + MER50 LTR ERV1 1 711 -23 721 371 54 32 chr4 130608794 130609649 -53679013 - MERVL-C1 LTR ERVL -201 5284 4411 443 371 22 16 chr4 130609877 130610195 -53678467 - HERV16 LTR ERVL -3714 1282 963 509 323 51 0 chr4 130610733 130610928 -53677734 - HERV16 LTR ERVL -4753 243 39 535 313 61 51 chr4 130610958 130611350 -53677312 - LTR16A1 LTR ERVL -4 473 73 24 0 0 0 chr4 130611884 130611908 -53676754 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr4 130613680 130613715 -53674947 + AT_rich Low_complexity Low_complexity 1 35 0 1451 181 23 11 chr4 130614060 130614326 -53674336 - AluJo SINE Alu -33 279 11 346 233 121 26 chr4 130614628 130614744 -53673918 - L2 LINE L2 -25 3288 3162 29 47 0 0 chr4 130614914 130614957 -53673705 + AT_rich Low_complexity Low_complexity 1 43 0 265 255 142 9 chr4 130614970 130615076 -53673586 - MIR3 SINE MIR -4 204 85 383 176 12 24 chr4 130615421 130615506 -53673156 + L2 LINE L2 3221 3304 -9 243 310 54 59 chr4 130616117 130616320 -53672342 - LTR68 LTR ERV1 -532 208 7 202 318 104 45 chr4 130616708 130616862 -53671800 - L2 LINE L2 0 3272 3110 4072 199 53 31 chr4 130617838 130619390 -53669272 - MER52A LTR ERV1 -2 1753 2 889 140 12 0 chr4 130619459 130619623 -53669039 + CT-rich Low_complexity Low_complexity 3 168 0 229 283 67 17 chr4 130619699 130619819 -53668843 - L1MEd LINE L1 -4957 1162 1037 198 103 0 0 chr4 130619867 130619896 -53668766 + (A)n Simple_repeat Simple_repeat 1 29 0 2027 134 0 10 chr4 130621041 130621346 -53667316 - AluSx SINE Alu -10 302 1 484 300 7 7 chr4 130621937 130622087 -53666575 + MIR SINE MIR 68 217 -45 986 222 5 0 chr4 130622493 130622687 -53665975 + AluJo SINE Alu 1 195 -117 1028 152 11 5 chr4 130622802 130622993 -53665669 + L1MA4A LINE L1 6106 6297 -6 778 269 0 20 chr4 130623002 130623203 -53665459 + MIR SINE MIR 41 237 -25 540 350 14 14 chr4 130623859 130624076 -53664586 + MER58A DNA MER1_type 1 217 -7 288 77 0 0 chr4 130624477 130624516 -53664146 + (TG)n Simple_repeat Simple_repeat 2 40 0 24 32 0 0 chr4 130624591 130624622 -53664040 + AT_rich Low_complexity Low_complexity 1 31 0 2026 119 0 31 chr4 130627202 130627496 -53661166 - AluSg SINE Alu -23 287 3 242 356 20 40 chr4 130628069 130628170 -53660492 + L2 LINE L2 3171 3269 -3 1564 96 0 85 chr4 130629630 130629890 -53658772 + AluY SINE Alu 70 307 -4 1495 225 8 25 chr4 130631398 130631754 -53656908 + MLT1A1 LTR MaLR 1 350 -15 1449 189 3 55 chr4 130631860 130632167 -53656495 - AluJo SINE Alu -11 291 1 1182 144 29 5 chr4 130632459 130632667 -53655995 + Tigger2 DNA MER2_type 1 213 -2505 795 168 6 56 chr4 130632664 130632825 -53655837 + Tigger2 DNA MER2_type 2554 2706 -12 * 1990 206 97 4 chr4 130633354 130633816 -53654846 + MLT1D LTR MaLR 1 505 0 27 62 0 0 chr4 130634428 130634476 -53654186 + AT_rich Low_complexity Low_complexity 1 48 0 1159 328 72 11 chr4 130635030 130635561 -53653101 + L2 LINE L2 2156 2718 -596 198 71 0 0 chr4 130636829 130636857 -53651805 + (TA)n Simple_repeat Simple_repeat 2 29 0 1003 327 12 8 chr4 130636891 130637384 -53651278 + L1M4 LINE L1 3308 3802 -2344 284 212 18 15 chr4 130637483 130637582 -53651080 + MLT1H1 LTR MaLR 471 555 0 240 342 17 17 chr4 130637780 130637900 -53650762 + MLT1-int LTR MaLR 422 541 -830 685 286 72 77 chr4 130638852 130638910 -53649752 + MLT1H LTR MaLR 49 106 -443 2217 107 3 0 chr4 130638910 130639209 -53649453 - AluSg SINE Alu -10 300 1 685 286 72 77 chr4 130639209 130639647 -53649015 + MLT1H LTR MaLR 106 543 -6 189 0 0 0 chr4 130640028 130640049 -53648613 + (T)n Simple_repeat Simple_repeat 1 21 0 2148 172 20 41 chr4 130640274 130640734 -53647928 - MSTB2 LTR MaLR -4 453 4 2076 134 3 6 chr4 130641437 130641751 -53646911 + AluSp SINE Alu 1 313 0 3163 142 34 2 chr4 130641847 130642353 -53646309 + MER1A DNA MER1_type 2 523 -4 342 345 97 9 chr4 130643604 130643820 -53644842 + L2 LINE L2 3021 3259 -54 1520 191 4 11 chr4 130643820 130644097 -53644565 - AluJb SINE Alu -37 275 1 279 312 118 12 chr4 130644491 130644661 -53644001 + MER46C DNA MER2_type 146 333 -5 180 288 45 0 chr4 130645039 130645105 -53643557 - MIR3 SINE MIR -3 205 137 38 51 0 0 chr4 130645112 130645171 -53643491 + AT_rich Low_complexity Low_complexity 1 59 0 218 195 0 24 chr4 130645401 130645442 -53643220 - L2 LINE L2 -254 3059 3020 26 30 0 0 chr4 130645537 130645570 -53643092 + AT_rich Low_complexity Low_complexity 1 33 0 1046 170 19 33 chr4 130647456 130647668 -53640994 - MER3 DNA MER1_type 0 209 1 1898 255 25 56 chr4 130648251 130648837 -53639825 + MLT1E2 LTR MaLR 5 571 -55 2051 108 3 7 chr4 130648837 130649133 -53639529 - AluSx SINE Alu -6 306 12 1898 255 25 56 chr4 130649133 130649186 -53639476 + MLT1E2 LTR MaLR 571 624 -2 189 273 140 80 chr4 130651549 130651699 -53636963 + L3 LINE CR1 1083 1241 -336 21 36 0 0 chr4 130652030 130652058 -53636604 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr4 130652298 130652322 -53636340 + AT_rich Low_complexity Low_complexity 1 24 0 6434 141 35 55 chr4 130652493 130652946 -53635716 - Tigger3b DNA MER2_type -1797 1231 771 1635 192 0 3 chr4 130652946 130653237 -53635425 + AluJo SINE Alu 1 290 -22 6434 141 35 55 chr4 130653237 130653732 -53634930 - Tigger3b DNA MER2_type -2257 771 312 3146 30 0 0 chr4 130653732 130654101 -53634561 + L1PA3 LINE L1 5782 6150 -5 6434 141 35 55 chr4 130654101 130654407 -53634255 - Tigger3b DNA MER2_type -2716 312 1 1304 234 57 39 chr4 130656511 130656900 -53631762 - MSTD LTR MaLR 0 396 1 28 29 0 0 chr4 130657629 130657664 -53630998 + AT_rich Low_complexity Low_complexity 1 35 0 222 62 0 0 chr4 130657670 130657702 -53630960 + (TG)n Simple_repeat Simple_repeat 2 33 0 27 0 0 0 chr4 130659353 130659380 -53629282 + AT_rich Low_complexity Low_complexity 1 27 0 1451 194 58 124 chr4 130659463 130659616 -53629046 - MER31A LTR ERV1 -4 481 319 351 0 0 0 chr4 130659616 130659655 -53629007 + (TG)n Simple_repeat Simple_repeat 1 39 0 * 384 22 0 0 chr4 130659654 130659699 -53628963 + (GA)n Simple_repeat Simple_repeat 1 45 0 1451 194 58 124 chr4 130659655 130659748 -53628914 - MER31A LTR ERV1 -166 319 221 1926 119 4 7 chr4 130659748 130660025 -53628637 + AluSx SINE Alu 2 277 -35 1451 194 58 124 chr4 130660025 130660043 -53628619 - MER31A LTR ERV1 -264 221 203 2236 75 0 0 chr4 130660043 130660375 -53628287 + AluY SINE Alu 1 332 0 1451 194 58 124 chr4 130660375 130660665 -53627997 - MER31A LTR ERV1 -282 203 1 385 219 248 0 chr4 130660665 130660770 -53627892 - MER31B-int LTR ERV1 -20 4916 4786 8805 211 56 70 chr4 130660948 130663999 -53624663 - MER31B-int LTR ERV1 -467 4469 1460 2238 169 36 7 chr4 130663997 130664446 -53624216 - MER31B-int LTR ERV1 -3601 1335 874 * 1221 251 81 36 chr4 130664443 130664724 -53623938 - MER31B-int LTR ERV1 -4196 740 438 * 1326 264 28 3 chr4 130664724 130665080 -53623582 + MLT1A1 LTR MaLR 1 365 0 1221 251 81 36 chr4 130665080 130665156 -53623506 - MER31B-int LTR ERV1 -4498 438 367 595 248 13 33 chr4 130665167 130665320 -53623342 - MER31B-int LTR ERV1 -4772 164 15 304 291 81 29 chr4 130665458 130665630 -53623032 - L1ME4a LINE L1 -5 6116 5936 5191 200 40 4 chr4 130665811 130667930 -53620732 - L1PA16 LINE L1 -10 6156 3957 1613 227 24 40 chr4 130667930 130668353 -53620309 - MER31B LTR ERV1 -40 426 11 216 67 0 0 chr4 130668354 130668384 -53620278 + (TTG)n Simple_repeat Simple_repeat 2 31 0 534 335 40 18 chr4 130668415 130668639 -53620023 + MIR SINE MIR 21 249 -13 1012 209 27 18 chr4 130669085 130669352 -53619310 + MLT2A2 LTR ERVL 282 453 0 9547 114 50 36 chr4 130669356 130670909 -53617753 + THE1B-int LTR MaLR 6 1580 0 2130 132 20 28 chr4 130670909 130671265 -53617397 + THE1B LTR MaLR 1 353 -11 1784 128 10 28 chr4 130671253 130671323 -53617339 + THE1B LTR MaLR 80 150 -214 * 2295 70 3 13 chr4 130671323 130671623 -53617039 + AluY SINE Alu 1 297 -14 1784 128 10 28 chr4 130671623 130671842 -53616820 + THE1B LTR MaLR 150 364 0 3959 185 31 56 chr4 130671846 130673003 -53615659 - L1MA9 LINE L1 -89 6223 5093 195 321 36 0 chr4 130673008 130673092 -53615570 - L2 LINE L2 -1342 1972 1886 2353 56 0 47 chr4 130673579 130673898 -53614764 + AluY SINE Alu 1 304 -7 246 62 0 0 chr4 130673898 130673930 -53614732 + (TA)n Simple_repeat Simple_repeat 2 33 0 29 28 0 0 chr4 130674020 130674056 -53614606 + AT_rich Low_complexity Low_complexity 1 36 0 683 146 9 0 chr4 130674230 130674340 -53614322 + FLAM_A SINE Alu 22 132 -10 1398 227 40 76 chr4 130674340 130674790 -53613872 - MER67D LTR ERV1 -36 478 45 286 337 44 28 chr4 130677354 130677535 -53611127 + MIR SINE MIR 2 185 -77 21 36 0 0 chr4 130678438 130678466 -53610196 + AT_rich Low_complexity Low_complexity 1 28 0 328 324 20 20 chr4 130678466 130678670 -53609992 - L1MB1 LINE L1 -291 5898 5695 282 239 43 0 chr4 130678702 130678794 -53609868 + (TA)n Simple_repeat Simple_repeat 2 97 0 182 245 41 0 chr4 130678968 130679017 -53609645 + MIR SINE MIR 91 141 -121 25 75 0 0 chr4 130679105 130679158 -53609504 + AT_rich Low_complexity Low_complexity 1 53 0 539 264 28 14 chr4 130679491 130679635 -53609027 + MIR SINE MIR 90 235 -27 333 327 86 17 chr4 130679824 130680076 -53608586 + L2 LINE L2 2731 3002 -311 8419 106 13 11 chr4 130680100 130681295 -53607367 - HSMAR1 DNA Mariner -89 1198 1 208 218 26 13 chr4 130681411 130681489 -53607173 + (TA)n Simple_repeat Simple_repeat 1 79 0 27 29 0 0 chr4 130681848 130681882 -53606780 + AT_rich Low_complexity Low_complexity 1 34 0 23 54 0 0 chr4 130682065 130682102 -53606560 + AT_rich Low_complexity Low_complexity 1 37 0 1525 155 29 43 chr4 130682744 130683073 -53605589 - AluSx SINE Alu 0 335 11 4888 142 11 24 chr4 130683454 130684336 -53604326 + L1PB4 LINE L1 5279 6149 -7 206 118 0 0 chr4 130684473 130684507 -53604155 + (T)n Simple_repeat Simple_repeat 1 34 0 1808 148 49 0 chr4 130684633 130684759 -53603903 + AluSx SINE Alu 1 119 -193 276 30 0 0 chr4 130684759 130684792 -53603870 + (CA)n Simple_repeat Simple_repeat 2 34 0 1808 148 49 0 chr4 130684792 130684949 -53603713 + AluSx SINE Alu 119 298 -14 21 0 0 0 chr4 130687902 130687923 -53600739 + AT_rich Low_complexity Low_complexity 1 21 0 225 65 0 0 chr4 130689877 130689908 -53598754 + (TG)n Simple_repeat Simple_repeat 2 32 0 10679 157 18 24 chr4 130690064 130691991 -53596671 - L1P LINE L1 -4221 1925 11 1975 147 0 0 chr4 130692043 130692336 -53596326 + AluSx SINE Alu 6 298 -14 30 0 0 0 chr4 130692441 130692471 -53596191 + AT_rich Low_complexity Low_complexity 1 30 0 967 185 46 15 chr4 130692475 130692735 -53595927 - L1MA8 LINE L1 -8 6283 6016 3865 200 52 46 chr4 130692742 130692843 -53595819 - L1 LINE L1 -2135 4971 4872 7642 22 1 0 chr4 130692843 130693952 -53594710 + L1PA3 LINE L1 5042 6152 -3 3865 200 52 46 chr4 130693952 130694116 -53594546 - L1 LINE L1 -2234 4872 4710 2152 101 30 3 chr4 130694116 130694414 -53594248 - AluY SINE Alu -5 306 1 3865 200 52 46 chr4 130694414 130695329 -53593333 - L1 LINE L1 -2396 4710 3783 1835 270 29 78 chr4 130695322 130696023 -53592639 - L1 LINE L1 -4594 2512 1778 * 1852 136 0 21 chr4 130696023 130696303 -53592359 + AluSg SINE Alu 1 274 -36 318 26 0 0 chr4 130696305 130696344 -53592318 + (TC)n Simple_repeat Simple_repeat 2 40 0 1835 270 29 78 chr4 130696344 130697303 -53591359 - L1 LINE L1 -5329 1777 6 22 0 0 0 chr4 130697314 130697336 -53591326 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr4 130697711 130697735 -53590927 + AT_rich Low_complexity Low_complexity 1 24 0 2003 139 3 3 chr4 130698043 130698346 -53590316 - AluSx SINE Alu -9 303 1 21 36 0 0 chr4 130699716 130699744 -53588918 + AT_rich Low_complexity Low_complexity 1 28 0 192 125 0 0 chr4 130699930 130699962 -53588700 + (TG)n Simple_repeat Simple_repeat 1 32 0 480 77 0 0 chr4 130700047 130700112 -53588550 + (TG)n Simple_repeat Simple_repeat 1 65 0 3519 260 62 24 chr4 130700818 130701279 -53587383 + L1MDb LINE L1 1329 1771 -4635 963 78 28 14 chr4 130701279 130701420 -53587242 - L1PA8 LINE L1 -2 6170 6028 3519 260 62 24 chr4 130701420 130703334 -53585328 + L1MDb LINE L1 1771 3830 -2576 2291 87 3 3 chr4 130703334 130703645 -53585017 - AluY SINE Alu 0 311 1 3519 260 62 24 chr4 130703645 130704079 -53584583 + L1MDb LINE L1 3830 4246 -2160 302 182 0 0 chr4 130704082 130704148 -53584514 - MER2 DNA MER2_type -196 149 84 2712 48 0 0 chr4 130704148 130704479 -53584183 - L1PA7 LINE L1 0 6154 5824 264 293 71 30 chr4 130705243 130705342 -53583320 - L2 LINE L2 -16 3256 3154 180 0 0 0 chr4 130705990 130706010 -53582652 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 1750 169 69 17 chr4 130706027 130706163 -53582499 - L1PB4 LINE L1 -4 6152 6024 201 39 0 0 chr4 130706163 130706189 -53582473 + (TCCC)n Simple_repeat Simple_repeat 1 26 0 1750 169 69 17 chr4 130706189 130706401 -53582261 - L1PB4 LINE L1 -132 6024 5786 21 0 0 0 chr4 130707152 130707173 -53581489 + AT_rich Low_complexity Low_complexity 1 21 0 1445 200 28 17 chr4 130707468 130707828 -53580834 + L1MB4 LINE L1 5817 6180 0 21 82 0 0 chr4 130708482 130708531 -53580131 + AT_rich Low_complexity Low_complexity 1 49 0 21 71 0 0 chr4 130709039 130709081 -53579581 + AT_rich Low_complexity Low_complexity 1 42 0 23 92 0 0 chr4 130709726 130709791 -53578871 + AT_rich Low_complexity Low_complexity 1 65 0 21 36 0 0 chr4 130710080 130710108 -53578554 + AT_rich Low_complexity Low_complexity 1 28 0 1322 100 57 52 chr4 130710162 130710391 -53578271 + MER30 DNA MER1_type 1 230 0 1168 298 95 18 chr4 130711118 130711622 -53577040 + MLT1H LTR MaLR 7 549 0 811 150 15 0 chr4 130711809 130711942 -53576720 - AluSg/x SINE Alu -5 305 171 1856 140 3 32 chr4 130712442 130712757 -53575905 + AluSx SINE Alu 1 306 -6 21 0 0 0 chr4 130712835 130712856 -53575806 + AT_rich Low_complexity Low_complexity 1 21 0 950 91 0 0 chr4 130713209 130713330 -53575332 + AluY SINE Alu 172 292 -19 26 30 0 0 chr4 130713330 130713363 -53575299 + AT_rich Low_complexity Low_complexity 1 33 0 15442 184 24 14 chr4 130714398 130718678 -53569984 - L1PA13 LINE L1 0 6814 2492 2410 129 12 39 chr4 130718678 130719089 -53569573 - MER75 DNA T2_type -1 513 114 10548 202 57 10 chr4 130719089 130720214 -53568448 - L1PA13 LINE L1 -4642 2145 1074 1571 156 72 31 chr4 130720214 130720574 -53568088 - THE1C LTR MaLR 0 375 1 10548 202 57 10 chr4 130720574 130721496 -53567166 - L1PA13 LINE L1 -5713 1074 2 23 0 0 0 chr4 130721544 130721567 -53567095 + AT_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr4 130721711 130721734 -53566928 + (GAAA)n Simple_repeat Simple_repeat 4 26 0 30 0 0 0 chr4 130722779 130722809 -53565853 + AT_rich Low_complexity Low_complexity 1 30 0 5511 192 25 29 chr4 130723258 130725431 -53563231 - L1MA7 LINE L1 -69 6222 4053 469 220 71 0 chr4 130725426 130725567 -53563095 - L1MA7 LINE L1 -3105 3041 2891 * 22 80 0 0 chr4 130726367 130726417 -53562245 + AT_rich Low_complexity Low_complexity 1 50 0 1467 134 57 16 chr4 130726613 130726859 -53561803 + AluSq SINE Alu 1 256 -57 267 207 98 0 chr4 130726883 130726965 -53561697 + L1MC4 LINE L1 6614 6703 -1339 201 147 0 0 chr4 130726968 130727002 -53561660 + (TA)n Simple_repeat Simple_repeat 1 34 0 9044 240 70 33 chr4 130728136 130732004 -53556658 + L1PA16 LINE L1 1819 5832 -334 21 0 0 0 chr4 130732149 130732170 -53556492 + AT_rich Low_complexity Low_complexity 1 21 0 508 313 52 30 chr4 130733362 130733592 -53555070 - MIR SINE MIR 0 262 28 309 344 13 19 chr4 130735952 130736109 -53552553 + ERVL LTR ERVL 1166 1321 -4443 2934 167 12 20 chr4 130736109 130736701 -53551961 - L1MA4A LINE L1 -5 6298 5712 253 361 21 7 chr4 130737236 130737380 -53551282 + ERVL LTR ERVL 1842 1987 -3498 863 240 105 72 chr4 130738100 130738527 -53550135 + MLT1C LTR MaLR 13 465 -2 491 303 94 41 chr4 130738668 130738912 -53549750 - MIR SINE MIR 0 262 6 319 371 26 30 chr4 130738912 130739179 -53549483 + L1M4 LINE L1 3894 4159 -1987 222 37 0 0 chr4 130740266 130740293 -53548369 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 617 289 20 13 chr4 130740344 130740398 -53548264 + MLT1A1 LTR MaLR 1 53 -312 2785 6 0 13 chr4 130740398 130740715 -53547947 + AluYb8 SINE Alu 1 313 -5 617 289 20 13 chr4 130740715 130740996 -53547666 + MLT1A1 LTR MaLR 53 306 -59 1939 133 0 13 chr4 130741190 130741507 -53547155 + AluYb8 SINE Alu 1 313 -5 1658 217 13 3 chr4 130741529 130741847 -53546815 + MLT1A1 LTR MaLR 45 365 0 5387 30 0 0 chr4 130741990 130742624 -53546038 - L1PA4 LINE L1 0 6155 5522 182 128 26 0 chr4 130742982 130743021 -53545641 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 209 281 0 0 chr4 130743025 130743082 -53545580 + (CATATA)n Simple_repeat Simple_repeat 5 61 0 248 323 0 0 chr4 130743408 130743504 -53545158 + (TATAG)n Simple_repeat Simple_repeat 5 100 0 2056 110 0 23 chr4 130743733 130744034 -53544628 + AluY SINE Alu 1 294 -17 1872 136 24 7 chr4 130744272 130744559 -53544103 - AluSx SINE Alu -20 292 1 237 33 0 0 chr4 130744594 130744624 -53544038 + (TG)n Simple_repeat Simple_repeat 2 31 0 270 81 0 0 chr4 130744625 130744662 -53544000 + (TA)n Simple_repeat Simple_repeat 2 38 0 317 313 55 55 chr4 130744673 130744855 -53543807 - MER5A DNA MER1_type -7 182 1 21 82 0 0 chr4 130746494 130746543 -53542119 + AT_rich Low_complexity Low_complexity 1 49 0 2097 174 36 0 chr4 130746596 130746982 -53541680 - MER57A LTR ERV1 -1 402 3 232 362 130 16 chr4 130747015 130747200 -53541462 - L2 LINE L2 0 3272 3067 346 321 43 21 chr4 130747438 130747578 -53541084 - L2 LINE L2 -4 3309 3167 1359 299 75 14 chr4 130748197 130748679 -53539983 - LTR40a LTR ERVL -2 517 7 1613 175 18 0 chr4 130748718 130749004 -53539658 + MER50 LTR ERV1 1 291 -443 1823 136 17 19 chr4 130749020 130749366 -53539296 - MER4A LTR ERV1 0 664 261 507 167 31 10 chr4 130749366 130749462 -53539200 - MER4A LTR ERV1 -566 98 1 2094 141 47 54 chr4 130749464 130749891 -53538771 + MER50 LTR ERV1 311 734 0 4346 155 54 18 chr4 130749892 130750379 -53538283 + MER4D LTR ERV1 28 320 -344 2057 115 24 3 chr4 130750379 130750675 -53537987 - AluSp SINE Alu -11 302 1 4346 155 54 18 chr4 130750675 130751033 -53537629 + MER4D LTR ERV1 320 664 0 21 0 0 0 chr4 130752374 130752395 -53536267 + AT_rich Low_complexity Low_complexity 1 21 0 32 26 0 0 chr4 130752749 130752788 -53535874 + AT_rich Low_complexity Low_complexity 1 39 0 23449 83 10 20 chr4 130753265 130757561 -53531101 - L1PA6 LINE L1 0 6154 1907 873 247 0 18 chr4 130807566 130807789 -53480873 - L1M4 LINE L1 -2319 3827 3609 1312 126 10 5 chr4 130807899 130808106 -53480556 + L1PB1 LINE L1 5944 6151 0 1153 235 78 38 chr4 130808122 130808492 -53480170 + MLT1D LTR MaLR 121 505 0 423 330 77 30 chr4 130808634 130808870 -53479792 + MIR SINE MIR 17 262 0 21 36 0 0 chr4 130809013 130809041 -53479621 + AT_rich Low_complexity Low_complexity 1 28 0 1888 138 91 0 chr4 130809628 130809947 -53478715 + MER7A DNA MER2_type 1 346 0 480 233 19 50 chr4 130810022 130810131 -53478531 + L1MA10 LINE L1 6179 6283 -51 1715 210 5 22 chr4 130810131 130810502 -53478160 + MLT1A1 LTR MaLR 1 365 0 480 233 19 50 chr4 130810502 130810551 -53478111 + L1MA10 LINE L1 6283 6332 -2 3907 180 41 8 chr4 130811119 130812369 -53476293 - L1M2 LINE L1 -506 5785 4492 22 56 0 0 chr4 130813093 130813129 -53475533 + AT_rich Low_complexity Low_complexity 1 36 0 238 345 167 6 chr4 130813488 130813662 -53475000 + MIR SINE MIR 32 233 -29 320 314 65 50 chr4 130813747 130814008 -53474654 - L2 LINE L2 -61 3252 2988 1542 182 70 31 chr4 130814009 130814367 -53474295 + THE1C LTR MaLR 4 375 0 8977 149 16 38 chr4 130814370 130815985 -53472677 + THE1C-int LTR MaLR 3 1580 0 1568 166 77 34 chr4 130815985 130816335 -53472327 + THE1C LTR MaLR 1 365 -10 6229 217 120 15 chr4 130816436 130819153 -53469509 - L1P5 LINE L1 -383 6484 3465 2181 226 28 2 chr4 130819234 130819734 -53468928 - L1P5 LINE L1 -6312 551 39 514 183 0 61 chr4 130819741 130819856 -53468806 - MLT1E2 LTR MaLR -518 108 1 357 62 0 0 chr4 130820395 130820443 -53468219 + (GA)n Simple_repeat Simple_repeat 1 48 0 284 302 3 22 chr4 130822132 130822271 -53466391 + L1M4c LINE L1 1 1034 -6003 11829 159 25 1 chr4 130822851 130824873 -53463789 - Tigger1 DNA MER2_type 0 2418 349 371 135 67 0 chr4 130824873 130824962 -53463700 + L1MA8 LINE L1 6186 6280 -11 1137 229 32 0 chr4 130824988 130825407 -53463255 + L1MC/D LINE L1 5056 5497 -743 795 257 65 14 chr4 130825410 130825686 -53462976 + L1M4c LINE L1 2160 2449 -4659 1006 252 122 12 chr4 130825931 130826988 -53461674 + L1M4c LINE L1 2625 3728 -3378 1043 214 4 45 chr4 130827003 130827270 -53461392 + L1M4c LINE L1 4532 4787 -2319 1320 78 11 21 chr4 130828223 130828414 -53460248 + MER75B DNA T2_type 51 239 -4 1702 266 83 51 chr4 130828439 130828643 -53460019 - L2 LINE L2 -1214 2100 1904 2075 111 0 10 chr4 130828643 130828932 -53459730 - AluSc SINE Alu -18 291 6 1702 266 83 51 chr4 130828932 130829474 -53459188 - L2 LINE L2 -1410 1904 1330 22 35 0 0 chr4 130830439 130830468 -53458194 + AT_rich Low_complexity Low_complexity 1 29 0 613 186 53 0 chr4 130831235 130831348 -53457314 - MER82 DNA MER2_type -502 151 33 466 304 7 0 chr4 130831463 130831601 -53457061 + MLT2F LTR ERVL 8 146 -517 591 182 95 40 chr4 130831605 130831753 -53456909 + MLT1E3 LTR MaLR 51 206 -418 262 257 59 50 chr4 130831837 130831938 -53456724 + MLT2F LTR ERVL 204 305 -358 234 217 12 24 chr4 130832004 130832087 -53456575 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 361 192 30 0 chr4 130832238 130832337 -53456325 + CT-rich Low_complexity Low_complexity 3 104 0 4246 148 35 90 chr4 130832849 130833633 -53455029 + MER4D LTR ERV1 1 724 -179 1879 124 4 0 chr4 130833633 130833906 -53454756 - AluSx SINE Alu -7 305 32 4246 148 35 90 chr4 130833906 130834077 -53454585 + MER4D LTR ERV1 724 903 0 300 314 57 8 chr4 130834212 130834336 -53454326 + MLT1I LTR MaLR 277 406 -3 316 130 29 0 chr4 130834819 130834888 -53453774 + (TA)n Simple_repeat Simple_repeat 1 71 0 271 342 0 0 chr4 130835540 130835619 -53453043 + L2 LINE L2 3226 3304 -9 251 289 114 40 chr4 130835623 130835772 -53452890 - L2 LINE L2 -3 3310 3151 208 370 17 25 chr4 130835811 130835930 -53452732 - L2 LINE L2 -240 3032 2915 2248 68 7 17 chr4 130837501 130837793 -53450869 - AluY SINE Alu -6 305 17 644 140 122 0 chr4 130839605 130839712 -53448950 - 5S rRNA rRNA -1 120 1 2035 250 50 30 chr4 130839822 130840446 -53448216 + MER92B LTR ERV1 1 636 0 2975 232 20 46 chr4 130841001 130841879 -53446783 + MER31-int LTR ERV1 439 1294 -3642 645 210 6 13 chr4 130841899 130842056 -53446606 + MER31-int LTR ERV1 1129 1284 -3652 1486 71 90 0 chr4 130842274 130842486 -53446176 + L1PA7 LINE L1 5920 6150 -4 1801 259 84 56 chr4 130842603 130843690 -53444972 + MER31-int LTR ERV1 1950 3066 -1870 2763 243 65 68 chr4 130844227 130844691 -53443971 + MER31-int LTR ERV1 3171 3635 -1301 180 0 0 0 chr4 130844691 130844711 -53443951 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 2763 243 65 68 chr4 130844711 130844947 -53443715 + MER31-int LTR ERV1 3635 3870 -1066 2726 77 107 5 chr4 130844947 130845350 -53443312 - MLT2A1 LTR ERVL 0 444 1 2763 243 65 68 chr4 130845350 130845735 -53442927 + MER31-int LTR ERV1 3870 4254 -682 355 238 126 40 chr4 130845736 130845887 -53442775 + LTR37A LTR ERV1 1 164 -262 294 179 60 0 chr4 130845996 130846063 -53442599 + MER31-int LTR ERV1 4379 4449 -487 846 214 15 15 chr4 130846139 130846335 -53442327 + MER92B LTR ERV1 432 627 -9 275 236 97 21 chr4 130847674 130847800 -53440862 - MLT1J2 LTR MaLR -279 232 64 2288 62 0 50 chr4 130847835 130848156 -53440506 + AluY SINE Alu 1 305 -6 51 17 0 0 chr4 130849750 130849808 -53438854 + AT_rich Low_complexity Low_complexity 1 58 0 330 327 19 0 chr4 130849863 130849967 -53438695 + MLT1J2 LTR MaLR 71 176 -274 1876 203 96 5 chr4 130850216 130850635 -53438027 + MSTB2 LTR MaLR 1 457 0 384 287 73 0 chr4 130851545 130851709 -53436953 + L1 LINE L1 3758 3933 -2213 21 82 0 0 chr4 130851945 130851994 -53436668 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr4 130852379 130852401 -53436261 + AT_rich Low_complexity Low_complexity 1 22 0 1088 239 36 41 chr4 130852873 130853263 -53435399 - L1ME1 LINE L1 -5 6161 5774 351 305 11 17 chr4 130853270 130853444 -53435218 - L1M4 LINE L1 -2705 3441 3269 353 264 124 47 chr4 130853448 130853706 -53434956 - L1MCc LINE L1 -6051 372 95 218 313 181 38 chr4 130853919 130854079 -53434583 - L2 LINE L2 -472 2842 2660 216 0 0 0 chr4 130854103 130854127 -53434535 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 21 0 0 0 chr4 130854127 130854148 -53434514 + AT_rich Low_complexity Low_complexity 1 21 0 1828 140 7 11 chr4 130854148 130854434 -53434228 - AluSx SINE Alu -27 285 1 408 348 94 4 chr4 130854983 130855227 -53433435 - L2 LINE L2 -959 2355 2090 2013 152 36 33 chr4 130855919 130856282 -53432380 - THE1B LTR MaLR 0 364 1 7865 142 70 21 chr4 130856283 130857483 -53431179 - THE1B-int LTR MaLR -1 1579 287 2045 135 0 31 chr4 130857483 130857801 -53430861 - AluSg SINE Alu -2 308 1 7865 142 70 21 chr4 130857801 130858104 -53430558 - THE1B-int LTR MaLR -1293 287 1 1880 125 39 99 chr4 130858107 130858491 -53430171 - THE1B LTR MaLR -3 361 1 26 0 0 0 chr4 130858576 130858602 -53430060 + AT_rich Low_complexity Low_complexity 1 26 0 189 0 0 0 chr4 130858905 130858926 -53429736 + (A)n Simple_repeat Simple_repeat 1 21 0 554 345 35 42 chr4 130860399 130860683 -53427979 + L2 LINE L2 2611 2892 -422 23 78 0 0 chr4 130861043 130861094 -53427568 + AT_rich Low_complexity Low_complexity 1 51 0 1331 206 95 9 chr4 130861343 130861658 -53427004 + MER2 DNA MER2_type 2 343 -1 26 0 0 0 chr4 130862369 130862395 -53426267 + AT_rich Low_complexity Low_complexity 1 26 0 294 149 0 0 chr4 130862395 130862442 -53426220 - MER2 DNA MER2_type -267 78 32 22 0 0 0 chr4 130862588 130862610 -53426052 + AT_rich Low_complexity Low_complexity 1 22 0 237 324 103 0 chr4 130862684 130862820 -53425842 - LTR67 LTR ERVL 0 557 408 2014 163 14 3 chr4 130863892 130864253 -53424409 - MLT1A1 LTR MaLR 0 365 1 335 465 181 12 chr4 130864581 130865013 -53423649 - L2 LINE L2 0 3313 2809 287 356 147 42 chr4 130866730 130867824 -53420838 + L2 LINE L2 219 1427 -1887 507 85 0 0 chr4 130867826 130867908 -53420754 + (GGAA)n Simple_repeat Simple_repeat 1 82 0 389 304 145 43 chr4 130868658 130868865 -53419797 - MIR SINE MIR -30 232 5 387 358 106 21 chr4 130868832 130869209 -53419453 + L2 LINE L2 2245 2653 -661 * 23 54 0 0 chr4 130869569 130869606 -53419056 + AT_rich Low_complexity Low_complexity 1 37 0 229 271 24 12 chr4 130869697 130869782 -53418880 + (TA)n Simple_repeat Simple_repeat 1 86 0 1151 210 91 6 chr4 130870643 130870995 -53417667 + Charlie1b DNA MER1_type 135 516 -7 23 33 0 0 chr4 130871026 130871056 -53417606 + AT_rich Low_complexity Low_complexity 1 30 0 207 331 108 13 chr4 130872028 130872185 -53416477 + MIR SINE MIR 66 237 -25 351 0 0 0 chr4 130872599 130872638 -53416024 + (TA)n Simple_repeat Simple_repeat 1 39 0 306 0 0 0 chr4 130873033 130873067 -53415595 + (TG)n Simple_repeat Simple_repeat 2 35 0 211 404 72 12 chr4 130873877 130874043 -53414619 - MIR3 SINE MIR -23 185 10 495 0 0 0 chr4 130875399 130875454 -53413208 + (TA)n Simple_repeat Simple_repeat 2 56 0 1738 121 8 4 chr4 130875811 130876075 -53412587 - MER51A LTR ERV1 0 634 370 1305 128 5 0 chr4 130876068 130876255 -53412407 - MER51A LTR ERV1 -446 188 1 * 1014 194 60 32 chr4 130876714 130876869 -53411793 + L1MCa LINE L1 916 1082 -5344 1929 110 23 42 chr4 130876869 130877177 -53411485 - AluSx SINE Alu -9 303 2 1014 194 60 32 chr4 130877177 130877273 -53411389 + L1MCa LINE L1 1082 1174 -5252 1990 161 0 0 chr4 130879876 130880181 -53408481 + AluSx SINE Alu 1 305 -7 234 330 131 6 chr4 130880298 130880474 -53408188 + L1M4 LINE L1 2627 2824 -3322 1221 220 66 25 chr4 130880648 130881112 -53407550 + AluJo SINE Alu 1 476 0 1328 237 201 34 chr4 130881142 130881699 -53406963 - MLT1E1 LTR MaLR 0 654 5 1912 141 0 7 chr4 130881855 130882165 -53406497 - AluSx SINE Alu 0 308 1 519 327 35 13 chr4 130882290 130882602 -53406060 + L1M4 LINE L1 3660 3978 -2168 414 325 63 41 chr4 130882729 130883000 -53405662 - LTR16A1 LTR ERVL -116 341 65 22 56 0 0 chr4 130883192 130883228 -53405434 + AT_rich Low_complexity Low_complexity 1 36 0 28 0 0 0 chr4 130883433 130883461 -53405201 + AT_rich Low_complexity Low_complexity 1 28 0 2216 86 7 30 chr4 130883709 130884013 -53404649 - AluSp SINE Alu -16 297 1 192 179 0 0 chr4 130884390 130884429 -53404233 + (TATG)n Simple_repeat Simple_repeat 2 40 0 938 222 73 44 chr4 130884596 130884911 -53403751 - MLT1D LTR MaLR -4 501 178 994 261 0 13 chr4 130884930 130885168 -53403494 - MLT1D LTR MaLR -270 235 1 797 207 32 38 chr4 130885460 130885748 -53402914 + L1M1 LINE L1 2272 2560 -5005 2358 84 0 3 chr4 130885748 130886044 -53402618 - AluY SINE Alu -16 295 1 797 207 32 38 chr4 130886044 130886115 -53402547 + L1M1 LINE L1 2560 6238 -1327 317 183 0 0 chr4 130886145 130886205 -53402457 + L1M1 LINE L1 3556 3615 -3950 * 14976 160 15 15 chr4 130886202 130886852 -53401810 + L1MA2 LINE L1 2403 3052 -4671 2078 157 0 0 chr4 130886852 130887164 -53401498 + AluSx SINE Alu 1 312 0 14976 160 15 15 chr4 130887164 130891829 -53396833 + L1MA2 LINE L1 3052 7723 0 300 277 54 18 chr4 130891830 130891942 -53396720 + L1MC2 LINE L1 6218 6333 -11 22 0 0 0 chr4 130891979 130892001 -53396661 + AT_rich Low_complexity Low_complexity 1 22 0 368 267 20 104 chr4 130892217 130892468 -53396194 + MER112 DNA MER1_type 6 235 -25 1052 229 84 22 chr4 130892534 130892857 -53395805 + MER2 DNA MER2_type 1 343 -1 298 405 73 12 chr4 130893152 130893670 -53394992 + L2 LINE L2 2164 2713 -601 27 29 0 0 chr4 130894199 130894233 -53394429 + AT_rich Low_complexity Low_complexity 1 34 0 391 93 0 0 chr4 130894472 130894526 -53394136 + MSTB1 LTR MaLR 1 54 -378 1193 161 0 39 chr4 130894526 130894756 -53393906 + AluJo SINE Alu 85 305 -7 367 215 133 59 chr4 130894763 130894898 -53393764 - L1ME4a LINE L1 -3 6118 5974 1876 195 41 0 chr4 130894957 130895321 -53393341 + MSTB1 LTR MaLR 41 419 -13 21 36 0 0 chr4 130896089 130896117 -53392545 + AT_rich Low_complexity Low_complexity 1 28 0 2183 191 79 19 chr4 130896686 130897153 -53391509 - LTR42 LTR ERVL 0 495 1 1838 173 0 0 chr4 130897255 130897567 -53391095 - AluSx SINE Alu 0 312 1 298 188 62 0 chr4 130897639 130897703 -53390959 + MER3 DNA MER1_type 142 209 0 255 198 0 123 chr4 130897643 130897724 -53390938 - MER3 DNA MER1_type -106 103 33 * 253 208 65 52 chr4 130898166 130898243 -53390419 - MER20 DNA MER1_type -17 202 125 1026 252 0 5 chr4 130898645 130898855 -53389807 + MER58A DNA MER1_type 1 209 -15 292 320 41 14 chr4 130899047 130899194 -53389468 - MLT1J2 LTR MaLR -240 210 60 265 193 37 28 chr4 130899382 130899491 -53389171 + (TA)n Simple_repeat Simple_repeat 1 110 0 699 258 13 0 chr4 130899496 130899651 -53389011 - AluJb SINE Alu -23 289 133 195 42 0 0 chr4 130899651 130899675 -53388987 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1791 161 45 90 chr4 130900080 130900503 -53388159 - MER4A LTR ERV1 0 664 261 673 81 10 20 chr4 130900503 130900602 -53388060 - MER4A LTR ERV1 -566 98 1 14474 122 58 41 chr4 130900608 130902755 -53385907 - MER4A-int LTR ERV1 -2 6596 4390 1969 148 0 0 chr4 130902755 130903046 -53385616 - AluSx SINE Alu -21 291 1 14474 122 58 41 chr4 130903046 130903610 -53385052 - MER4A-int LTR ERV1 -2208 4390 3837 3745 137 57 65 chr4 130903609 130904563 -53384099 - MER4A-int LTR ERV1 -2917 3681 2736 * 1101 205 73 0 chr4 130904568 130904802 -53383860 + LTR8 LTR ERV1 7 257 -434 3736 90 68 51 chr4 130904802 130905527 -53383135 - MER4A-int LTR ERV1 -4103 2495 1759 456 19 0 0 chr4 130905536 130905589 -53383073 + (CA)n Simple_repeat Simple_repeat 2 54 0 5354 111 84 37 chr4 130905590 130906507 -53382155 - MER4A-int LTR ERV1 -5610 1148 189 1243 226 79 23 chr4 130906506 130906860 -53381802 - MER4A-int LTR ERV1 -4107 2224 1851 * 2495 81 89 44 chr4 130907099 130907577 -53381085 - MER4A-int LTR ERV1 -6035 563 1 1912 131 6 25 chr4 130907580 130907931 -53380731 - MER4A LTR ERV1 0 664 262 450 161 11 23 chr4 130907931 130908018 -53380644 - MER4A LTR ERV1 -565 99 14 220 391 30 47 chr4 130908079 130908314 -53380348 + L2 LINE L2 2476 2706 -608 203 361 25 42 chr4 130908454 130908573 -53380089 + L2 LINE L2 2942 3058 -214 184 328 94 0 chr4 130908683 130908747 -53379915 + L2 LINE L2 3239 3308 -5 3775 155 25 30 chr4 130909504 130910196 -53378466 + LTR8 LTR ERV1 1 688 -3 824 238 104 100 chr4 130910618 130911207 -53377455 + LTR49 LTR ERV1 5 595 0 186 344 33 22 chr4 130911448 130911538 -53377124 + L2 LINE L2 2942 3032 -240 3353 133 35 2 chr4 130911883 130912393 -53376269 + MER1A DNA MER1_type 1 527 -2 21 0 0 0 chr4 130912862 130912883 -53375779 + AT_rich Low_complexity Low_complexity 1 21 0 316 413 32 26 chr4 130912945 130913100 -53375562 - MER91A DNA MER1_type -31 165 10 3512 151 31 9 chr4 130913879 130914515 -53374147 + MER39B LTR ERV1 4 653 0 235 391 93 0 chr4 130914583 130914734 -53373928 + L2 LINE L2 3105 3269 -3 2092 183 21 38 chr4 130914929 130915408 -53373254 + LTR29 LTR ERV1 160 593 -2 4521 144 7 4 chr4 130915857 130916557 -53372105 - MER50 LTR ERV1 -23 711 10 659 236 94 111 chr4 130916596 130916957 -53371705 - MLT1A1 LTR MaLR -10 355 1 219 267 17 0 chr4 130917061 130917121 -53371541 + L2 LINE L2 2286 2346 -968 1776 164 17 3 chr4 130917244 130917537 -53371125 + AluJo SINE Alu 3 299 -13 667 231 50 28 chr4 130918509 130918791 -53369871 - LTR37A LTR ERV1 0 426 139 1085 104 0 0 chr4 130920249 130920403 -53368259 - L1PB1 LINE L1 -1 6150 5997 1313 208 35 14 chr4 130920828 130921117 -53367545 + AluJo SINE Alu 7 301 -11 21 57 0 0 chr4 130922052 130922087 -53366575 + AT_rich Low_complexity Low_complexity 1 35 0 874 160 27 53 chr4 130922166 130922385 -53366277 - AluJb SINE Alu 0 316 103 1525 148 81 73 chr4 130922484 130922645 -53366017 + THE1C LTR MaLR 1 159 -216 2203 61 4 4 chr4 130922645 130922969 -53365693 - AluY SINE Alu 0 325 2 1525 148 81 73 chr4 130922969 130923178 -53365484 + THE1C LTR MaLR 159 375 0 3898 154 17 2 chr4 130923459 130924101 -53364561 + MER39B LTR ERV1 2 653 0 4917 137 26 13 chr4 130924178 130925432 -53363230 - L1PA16 LINE L1 -9 6157 4868 2715 139 30 7 chr4 130925679 130926140 -53362522 + LTR49 LTR ERV1 1 472 -123 1689 158 138 14 chr4 130926151 130926506 -53362156 + MSTA LTR MaLR 1 399 -29 754 111 0 0 chr4 130926505 130926613 -53362049 + LTR49 LTR ERV1 486 593 -2 * 1592 135 112 32 chr4 130927478 130927825 -53360837 - THE1C LTR MaLR 0 375 1 680 160 17 8 chr4 130928066 130928185 -53360477 - MER4B LTR ERV1 -490 120 1 709 280 64 7 chr4 130928203 130928494 -53360168 + L1MEc LINE L1 1593 1901 -4491 333 118 0 0 chr4 130928494 130928545 -53360117 + (CA)n Simple_repeat Simple_repeat 2 52 0 697 230 146 11 chr4 130928557 130928844 -53359818 + L1MEc LINE L1 1947 2272 -4124 483 235 0 0 chr4 130928843 130928941 -53359721 - L1M2 LINE L1 -610 5702 5605 * 445 145 0 0 chr4 130928941 130929010 -53359652 + AluSp/q SINE Alu 220 288 -25 1145 264 79 31 chr4 130929030 130929429 -53359233 + MLT1D LTR MaLR 95 505 0 1921 256 31 76 chr4 130929432 130930271 -53358391 + MLT1D-int LTR MaLR 4 804 -567 * 2103 256 31 57 chr4 130930268 130930686 -53357976 + L1ME1 LINE L1 5309 5694 -472 1361 216 7 20 chr4 130930686 130930982 -53357680 + AluJo SINE Alu 1 292 -20 2103 256 31 57 chr4 130930982 130931439 -53357223 + L1ME1 LINE L1 5694 6161 -5 361 316 15 15 chr4 130931534 130931670 -53356992 + L2 LINE L2 2928 3063 -250 297 347 54 20 chr4 130931923 130932070 -53356592 - MIR SINE MIR -108 154 3 868 315 56 59 chr4 130933057 130933765 -53354897 - L2 LINE L2 -4 3309 2602 1104 273 127 13 chr4 130934617 130935103 -53353559 + MLT1F1 LTR MaLR 15 557 -10 22 0 0 0 chr4 130935172 130935194 -53353468 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 130935464 130935487 -53353175 + AT_rich Low_complexity Low_complexity 1 23 0 209 145 0 65 chr4 130936604 130936666 -53351996 + (TTATA)n Simple_repeat Simple_repeat 3 60 0 21 0 0 0 chr4 130936783 130936804 -53351858 + AT_rich Low_complexity Low_complexity 1 21 0 333 307 0 18 chr4 130936929 130936979 -53351683 + (TA)n Simple_repeat Simple_repeat 2 51 -110 199 71 0 0 chr4 130936979 130937007 -53351655 + (TTTA)n Simple_repeat Simple_repeat 2 148 0 1916 120 3 34 chr4 130937007 130937298 -53351364 - AluSx SINE Alu -1 311 3 333 307 0 18 chr4 130937298 130937409 -53351253 + (TA)n Simple_repeat Simple_repeat 49 161 0 216 191 0 0 chr4 130938150 130938197 -53350465 + T-rich Low_complexity Low_complexity 6 52 0 206 351 0 0 chr4 130938693 130938767 -53349895 + L2 LINE L2 3235 3308 -5 1131 244 126 23 chr4 130938848 130939280 -53349382 + MER89 LTR ERV1 3 557 -2 36 82 0 0 chr4 130939446 130939531 -53349131 + AT_rich Low_complexity Low_complexity 1 85 0 463 227 227 0 chr4 130940810 130940942 -53347720 + MER20 DNA MER1_type 1 162 -57 190 274 106 53 chr4 130941183 130941296 -53347366 - MIR SINE MIR -3 259 141 285 259 37 0 chr4 130942127 130942235 -53346427 + (TA)n Simple_repeat Simple_repeat 1 112 0 331 291 86 8 chr4 130942257 130942374 -53346288 + L2 LINE L2 3188 3313 0 269 174 0 0 chr4 130942584 130942630 -53346032 - L2 LINE L2 0 3313 3268 3537 121 58 7 chr4 130942639 130943241 -53345421 - LTR24C LTR ERV1 -2 633 1 1712 207 13 33 chr4 130943338 130943730 -53344932 + L1MD2 LINE L1 5448 5831 -411 351 195 9 26 chr4 130943732 130943816 -53344846 - AluJ/FLAM SINE Alu -240 62 10 894 249 15 23 chr4 130943816 130944081 -53344581 + L1MD2 LINE L1 5942 6204 -155 22 56 0 0 chr4 130944271 130944307 -53344355 + AT_rich Low_complexity Low_complexity 1 36 0 2113 118 3 3 chr4 130944398 130944695 -53343967 + AluSg SINE Alu 1 297 -13 25 75 0 0 chr4 130945058 130945111 -53343551 + AT_rich Low_complexity Low_complexity 1 53 0 29 0 0 0 chr4 130945359 130945388 -53343274 + AT_rich Low_complexity Low_complexity 1 29 0 967 253 102 67 chr4 130946633 130947123 -53341539 - MLT1G LTR MaLR -2 588 82 1751 240 17 66 chr4 130947178 130947305 -53341357 + LTR55 LTR ERV 1 133 -415 1872 156 0 7 chr4 130947305 130947588 -53341074 - AluJb SINE Alu -20 292 12 1751 240 17 66 chr4 130947588 130947691 -53340971 + LTR55 LTR ERV 133 239 -309 2240 131 43 3 chr4 130947691 130948041 -53340621 - THE1B LTR MaLR 0 364 1 1751 240 17 66 chr4 130948041 130948384 -53340278 + LTR55 LTR ERV 239 547 -1 399 41 0 0 chr4 130948407 130948456 -53340206 + (TG)n Simple_repeat Simple_repeat 2 50 0 237 348 11 11 chr4 130948535 130948624 -53340038 - LTR40a LTR ERVL -179 340 252 1014 288 63 35 chr4 130948977 130949439 -53339223 - MLT1G LTR MaLR -115 475 1 2124 117 0 0 chr4 130949612 130949919 -53338743 + AluSx SINE Alu 1 307 0 22 0 0 0 chr4 130952424 130952446 -53336216 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 130952511 130952534 -53336128 + AT_rich Low_complexity Low_complexity 1 23 0 273 278 42 0 chr4 130952614 130952686 -53335976 + L2 LINE L2 2553 2627 -687 2090 134 19 45 chr4 130952811 130953185 -53335477 - THE1B LTR MaLR 0 364 1 357 313 114 81 chr4 130953321 130953593 -53335069 + L2 LINE L2 2979 3259 -13 2395 74 0 3 chr4 130953752 130954050 -53334612 - AluY SINE Alu -14 297 1 22 0 0 0 chr4 130954139 130954161 -53334501 + AT_rich Low_complexity Low_complexity 1 22 0 186 209 0 0 chr4 130954891 130954934 -53333728 + (CATA)n Simple_repeat Simple_repeat 4 46 0 1620 159 184 11 chr4 130955000 130955365 -53333297 + MSTA LTR MaLR 1 428 0 2128 93 6 26 chr4 130955468 130955534 -53333128 - L1P4 LINE L1 -344 5824 5758 2198 133 13 19 chr4 130955534 130955909 -53332753 + THE1C LTR MaLR 3 375 0 2128 93 6 26 chr4 130955909 130956154 -53332508 - L1P4 LINE L1 -410 5758 5519 2152 130 17 8 chr4 130956155 130956509 -53332153 + L1PA13 LINE L1 5806 6162 -1 239 272 184 29 chr4 130957512 130957615 -53331047 - L2 LINE L2 -8 3305 3187 445 316 6 42 chr4 130957635 130957728 -53330934 + MLT1H1 LTR MaLR 1 87 -468 2520 118 6 3 chr4 130957728 130958091 -53330571 - THE1B LTR MaLR 0 364 1 445 316 6 42 chr4 130958091 130958165 -53330497 + MLT1H1 LTR MaLR 87 162 -393 225 319 51 51 chr4 130958487 130958625 -53330037 - L2 LINE L2 -162 3151 3014 26 30 0 0 chr4 130959044 130959077 -53329585 + AT_rich Low_complexity Low_complexity 1 33 0 189 0 0 0 chr4 130959081 130959102 -53329560 + (TA)n Simple_repeat Simple_repeat 1 21 0 279 316 43 14 chr4 131009662 131009801 -53278861 - MIR SINE MIR -113 149 7 256 236 22 11 chr4 131010071 131010160 -53278502 + T-rich Low_complexity Low_complexity 2 91 0 615 214 0 29 chr4 131010721 131010894 -53277768 + L1M4 LINE L1 2837 3004 -3142 419 280 0 0 chr4 131010869 131010994 -53277668 + L1M4 LINE L1 5176 5300 -846 * 4630 226 41 72 chr4 131010990 131011179 -53277483 + L1MC3 LINE L1 6186 6379 -1406 2641 37 0 3 chr4 131011179 131011500 -53277162 + L1PA3 LINE L1 5833 6152 -3 4630 226 41 72 chr4 131011500 131012927 -53275735 + L1MC3 LINE L1 6379 7753 -32 203 294 15 0 chr4 131012954 131013022 -53275640 + (TA)n Simple_repeat Simple_repeat 1 69 0 226 130 0 74 chr4 131013024 131013078 -53275584 + L1MC4 LINE L1 6654 6703 -1339 529 177 89 0 chr4 131013143 131013267 -53275395 + L1MA9 LINE L1 6030 6164 -148 778 170 90 27 chr4 131013517 131013705 -53274957 + L1PBa LINE L1 1 200 -6663 9566 118 140 8 chr4 131013707 131015345 -53273317 + L1PBa LINE L1 636 2490 -4373 294 400 32 0 chr4 131015913 131016038 -53272624 - MIR3 SINE MIR -71 137 9 223 303 0 15 chr4 131016063 131016129 -53272533 + L3 LINE CR1 1507 1571 -6 24 100 0 0 chr4 131016187 131016267 -53272395 + AT_rich Low_complexity Low_complexity 1 80 0 662 211 80 11 chr4 131017175 131017350 -53271312 + MLT1A2 LTR MaLR 1 187 -203 375 132 0 0 chr4 131017355 131017423 -53271239 + (TC)n Simple_repeat Simple_repeat 2 69 0 804 263 5 5 chr4 131017445 131017631 -53271031 + MLT1A2 LTR MaLR 189 374 0 23 54 0 0 chr4 131018064 131018101 -53270561 + AT_rich Low_complexity Low_complexity 1 37 0 40 0 0 0 chr4 131018593 131018633 -53270029 + AT_rich Low_complexity Low_complexity 1 40 0 241 69 0 0 chr4 131019195 131019224 -53269438 + (A)n Simple_repeat Simple_repeat 1 29 0 2131 59 0 75 chr4 131019238 131019558 -53269104 + AluY SINE Alu 2 297 -14 22 35 0 0 chr4 131020005 131020034 -53268628 + AT_rich Low_complexity Low_complexity 1 29 0 272 234 13 13 chr4 131020798 131020875 -53267787 + (TA)n Simple_repeat Simple_repeat 1 77 0 559 309 42 86 chr4 131021392 131021868 -53266794 + L2 LINE L2 1403 1857 -1457 408 287 30 67 chr4 131021873 131022037 -53266625 + MER63 DNA MER1_type 3 786 -50 940 295 50 19 chr4 131022128 131022504 -53266158 + L2 LINE L2 1829 2216 -1098 198 292 15 0 chr4 131022557 131022622 -53266040 + L2 LINE L2 2239 2304 -1010 3232 175 51 23 chr4 131022624 131023032 -53265630 - MER67C LTR ERV1 0 710 274 7454 92 10 15 chr4 131023032 131024108 -53264554 - MER11C LTR ERVK 0 1071 1 3232 175 51 23 chr4 131024108 131024390 -53264272 - MER67C LTR ERV1 -436 274 1 592 262 53 5 chr4 131025073 131025251 -53263411 - L1MA8 LINE L1 -1 6290 6101 1067 178 67 18 chr4 131025251 131025476 -53263186 - MER46A DNA MER2_type 0 236 1 1213 270 30 38 chr4 131025623 131026019 -53262643 - MSTD LTR MaLR 0 396 4 2512 151 26 2 chr4 131026308 131026726 -53261936 - MSTA LTR MaLR 0 428 1 706 274 107 46 chr4 131027131 131027504 -53261158 + MSTD LTR MaLR 1 396 0 342 0 0 0 chr4 131027869 131027907 -53260755 + (TG)n Simple_repeat Simple_repeat 1 38 0 5081 201 37 21 chr4 131028283 131029327 -53259335 - L1MC1 LINE L1 -1 6332 5259 963 50 0 0 chr4 131029327 131029448 -53259214 + (TA)n Simple_repeat Simple_repeat 1 121 0 5081 201 37 21 chr4 131029448 131029826 -53258836 - L1MC1 LINE L1 -1074 5259 4888 2017 132 0 49 chr4 131030032 131030358 -53258304 + AluSx SINE Alu 1 310 -2 2069 140 3 0 chr4 131030742 131031050 -53257612 - AluSx SINE Alu -3 309 1 21 57 0 0 chr4 131031438 131031473 -53257189 + AT_rich Low_complexity Low_complexity 1 35 0 381 102 0 0 chr4 131032475 131032534 -53256128 + (TG)n Simple_repeat Simple_repeat 1 59 0 44 20 0 0 chr4 131032695 131032746 -53255916 + AT_rich Low_complexity Low_complexity 1 51 0 610 348 51 22 chr4 131033695 131033997 -53254665 - LTR16A LTR ERVL -2 455 132 2247 196 33 47 chr4 131034158 131034674 -53253988 - MER67D LTR ERV1 -5 509 1 8709 33 4 0 chr4 131035070 131036880 -53251782 - L1PA4 LINE L1 -3 6152 4331 586 152 0 10 chr4 131036993 131037092 -53251570 - AluSg/x SINE Alu -7 302 205 1656 190 29 0 chr4 131037252 131037526 -53251136 + AluJb SINE Alu 7 288 -24 687 374 28 22 chr4 131037580 131038043 -53250619 - HERVL LTR ERVL -1098 4556 4091 661 324 60 16 chr4 131038318 131038682 -53249980 + L1PB4 LINE L1 17 396 -6453 1640 267 39 44 chr4 131039141 131040176 -53248486 + L1PB4 LINE L1 782 2019 -4831 * 5567 219 31 139 chr4 131040149 131042718 -53245944 + L1PB4 LINE L1 2387 4585 -2264 1628 228 7 0 chr4 131042718 131043025 -53245637 + AluJb SINE Alu 1 309 -3 5567 219 31 139 chr4 131043025 131043377 -53245285 + L1PB4 LINE L1 4585 4973 -1876 * 27567 126 15 17 chr4 131043365 131048916 -53239746 + L1PA8 LINE L1 641 6171 -1 392 179 13 0 chr4 131048913 131048991 -53239671 + L1M3 LINE L1 5366 5444 -736 * 4543 178 57 36 chr4 131049003 131050006 -53238656 + L1PB4 LINE L1 4946 6005 -854 351 78 0 0 chr4 131050006 131050057 -53238605 + (CAA)n Simple_repeat Simple_repeat 1 51 0 4543 178 57 36 chr4 131050057 131050921 -53237741 + L1PB4 LINE L1 6005 6849 -10 569 370 52 14 chr4 131050970 131051416 -53237246 - HERVL LTR ERVL -1925 3839 3377 394 363 10 10 chr4 131051525 131051729 -53236933 - HERVL LTR ERVL -2468 3186 2983 494 112 9 112 chr4 131053693 131053800 -53234862 - MLT1E2 LTR MaLR -530 96 1 1860 148 41 52 chr4 131054310 131054674 -53233988 + THE1B LTR MaLR 1 360 -4 27 62 0 0 chr4 131054725 131054773 -53233889 + AT_rich Low_complexity Low_complexity 1 48 0 427 109 16 0 chr4 131054929 131054993 -53233669 + THE1B LTR MaLR 300 364 0 21 36 0 0 chr4 131055150 131055178 -53233484 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr4 131055189 131055210 -53233452 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 1506 158 51 8 chr4 131055272 131055526 -53233136 + AluJb SINE Alu 6 270 -42 226 299 92 11 chr4 131055908 131055995 -53232667 + MIR SINE MIR 48 141 -121 21 0 0 0 chr4 131056181 131056202 -53232460 + AT_rich Low_complexity Low_complexity 1 21 0 1604 302 73 80 chr4 131056407 131057582 -53231080 + L2 LINE L2 1316 2484 -830 1767 135 0 11 chr4 131057582 131057842 -53230820 - AluSx SINE Alu -17 295 39 1604 302 73 80 chr4 131057842 131057946 -53230716 + L2 LINE L2 2484 2587 -727 253 297 59 0 chr4 131058005 131058106 -53230556 + Ricksha DNA DNA 239 345 -1701 645 301 22 73 chr4 131058107 131058398 -53230264 + MLT2E LTR ERVL 2 277 -351 216 67 0 0 chr4 131058769 131058799 -53229863 + (GA)n Simple_repeat Simple_repeat 1 30 0 1397 220 13 10 chr4 131059099 131059399 -53229263 + AluJo SINE Alu 1 301 -11 2251 82 3 19 chr4 131059408 131059726 -53228936 - AluSp SINE Alu 0 313 1 208 329 0 0 chr4 131060026 131060096 -53228566 + (TA)n Simple_repeat Simple_repeat 1 70 0 258 236 162 47 chr4 131060937 131061085 -53227577 - MIR SINE MIR -41 221 57 27 49 0 0 chr4 131061624 131061665 -53226997 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr4 131061811 131061832 -53226830 + AT_rich Low_complexity Low_complexity 1 21 0 655 175 8 0 chr4 131061890 131062010 -53226652 - AluJo SINE Alu -2 310 190 196 329 66 29 chr4 131062764 131062901 -53225761 + MIR SINE MIR 1 142 -120 1846 192 63 15 chr4 131063487 131063899 -53224763 + MSTB1 LTR MaLR 1 432 0 181 264 132 0 chr4 131065305 131065358 -53223304 - MIR SINE MIR -147 115 56 273 186 0 0 chr4 131068625 131068668 -53219994 - LTR33 LTR ERVL -2 519 477 489 321 41 32 chr4 131068843 131069001 -53219661 - LTR33 LTR ERVL -301 220 58 1947 154 118 20 chr4 131069001 131069391 -53219271 + MSTA LTR MaLR 1 428 0 489 321 41 32 chr4 131069391 131069450 -53219212 - LTR33 LTR ERVL -463 58 1 198 0 0 0 chr4 131069585 131069607 -53219055 + (CA)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr4 131069677 131069699 -53218963 + AT_rich Low_complexity Low_complexity 1 22 0 2770 149 123 14 chr4 131069861 131070412 -53218250 + LTR36 LTR ERV1 1 611 0 24 0 0 0 chr4 131071108 131071132 -53217530 + AT_rich Low_complexity Low_complexity 1 24 0 339 374 35 6 chr4 131071315 131071486 -53217176 - MIR SINE MIR -71 191 16 29 28 0 0 chr4 131071794 131071830 -53216832 + AT_rich Low_complexity Low_complexity 1 36 0 300 327 45 9 chr4 131071932 131072042 -53216620 + MIR SINE MIR 52 165 -97 279 0 0 0 chr4 131072148 131072179 -53216483 + (A)n Simple_repeat Simple_repeat 1 31 0 943 220 3 75 chr4 131072194 131072512 -53216150 + AluY SINE Alu 3 297 -4 26 0 0 0 chr4 131072517 131072543 -53216119 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr4 131072688 131072712 -53215950 + AT_rich Low_complexity Low_complexity 1 24 0 1303 126 0 0 chr4 131072843 131073033 -53215629 + AluSg/x SINE Alu 121 310 -2 21 57 0 0 chr4 131073280 131073315 -53215347 + AT_rich Low_complexity Low_complexity 1 35 0 1161 129 5 21 chr4 131073477 131073663 -53214999 - AluJo SINE Alu -129 183 1 243 0 0 0 chr4 131074005 131074032 -53214630 + (TG)n Simple_repeat Simple_repeat 2 28 0 26 50 0 0 chr4 131074115 131074155 -53214507 + AT_rich Low_complexity Low_complexity 1 40 0 26 0 0 0 chr4 131075063 131075089 -53213573 + AT_rich Low_complexity Low_complexity 1 26 0 3082 198 52 8 chr4 131076082 131076714 -53211948 - MER67C LTR ERV1 -50 660 1 1302 306 89 45 chr4 131076719 131077650 -53211012 + L2 LINE L2 2333 3313 0 28 29 0 0 chr4 131077692 131077727 -53210935 + AT_rich Low_complexity Low_complexity 1 35 0 39 50 0 0 chr4 131078851 131078911 -53209751 + AT_rich Low_complexity Low_complexity 1 60 0 28 48 0 0 chr4 131079045 131079087 -53209575 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr4 131080724 131080745 -53207917 + AT_rich Low_complexity Low_complexity 1 21 0 3667 175 77 39 chr4 131081331 131082196 -53206466 - MER4D LTR ERV1 0 830 1 1359 138 5 0 chr4 131082411 131082621 -53206041 - L1PB4 LINE L1 0 6156 5946 228 229 8 90 chr4 131082948 131083070 -53205592 + L1M4 LINE L1 2210 2321 -3825 315 0 0 0 chr4 131083070 131083105 -53205557 + (CA)n Simple_repeat Simple_repeat 2 36 0 401 340 142 0 chr4 131083387 131083584 -53205078 - L2 LINE L2 -269 3044 2820 483 256 36 77 chr4 131083604 131083799 -53204863 - L2 LINE L2 -1459 1855 1669 370 269 13 6 chr4 131084318 131084474 -53204188 + (TATATG)n Simple_repeat Simple_repeat 2 158 0 189 0 0 0 chr4 131084801 131084822 -53203840 + (TTA)n Simple_repeat Simple_repeat 1 21 0 1833 198 53 18 chr4 131084822 131085216 -53203446 + LOR1b LTR ERV1 54 461 0 2204 163 73 11 chr4 131085216 131085945 -53202717 + LOR1b-int LTR ERV1 1 608 -7512 820 246 26 10 chr4 131086104 131086299 -53202363 - HERVL40 LTR ERVL -766 4764 4567 196 254 95 0 chr4 131086300 131086363 -53202299 - MER5C DNA MER1_type -178 146 78 900 335 23 13 chr4 131086363 131086760 -53201902 - HERVL40 LTR ERVL -1027 4503 4103 486 302 95 17 chr4 131086914 131087093 -53201569 - HERVL40 LTR ERVL -2643 2887 2695 406 315 64 40 chr4 131087271 131087522 -53201140 - HERVL40 LTR ERVL -3928 1602 1346 1711 144 64 25 chr4 131088334 131088695 -53199967 - THE1C LTR MaLR 0 375 1 9720 133 38 8 chr4 131088699 131090227 -53198435 - THE1C-int LTR MaLR -6 1574 1 1638 158 57 33 chr4 131090227 131090593 -53198069 - THE1C LTR MaLR 0 375 1 1220 272 62 8 chr4 131090593 131090946 -53197716 - LTR40c LTR ERVL -40 425 54 302 276 9 0 chr4 131091182 131091287 -53197375 + (TA)n Simple_repeat Simple_repeat 2 107 0 31 0 0 0 chr4 131091341 131091372 -53197290 + AT_rich Low_complexity Low_complexity 1 31 0 2089 115 0 0 chr4 131092683 131092969 -53195693 + AluSc SINE Alu 9 294 -15 432 0 0 0 chr4 131092998 131093046 -53195616 + (TG)n Simple_repeat Simple_repeat 2 49 0 183 129 0 0 chr4 131093235 131093266 -53195396 + (TTCC)n Simple_repeat Simple_repeat 3 33 0 435 253 7 58 chr4 131093514 131093668 -53194994 + MER69A DNA AcHobo 19 164 -13 327 281 152 6 chr4 131094362 131094526 -53194136 + MIR SINE MIR 75 262 0 23 54 0 0 chr4 131095926 131095963 -53192699 + AT_rich Low_complexity Low_complexity 1 37 0 7409 37 8 0 chr4 131096840 131098297 -53190365 - L1PA5 LINE L1 -7 6147 4685 3825 42 4 0 chr4 131098297 131098779 -53189883 + L1PA5 LINE L1 4226 4709 -1437 352 339 151 5 chr4 131099082 131099268 -53189394 + MIR SINE MIR 49 261 -1 228 228 0 0 chr4 131099300 131099357 -53189305 + (TAG)n Simple_repeat Simple_repeat 1 57 0 2028 127 50 9 chr4 131099651 131099974 -53188688 - MER1B DNA MER1_type -1 336 1 691 289 50 58 chr4 131101558 131101938 -53186724 + L2 LINE L2 2359 2735 -579 1961 125 0 4 chr4 131102097 131102409 -53186253 - AluSc SINE Alu 0 311 1 240 281 37 24 chr4 131103414 131103496 -53185166 - L2 LINE L2 0 3313 3231 1401 181 79 60 chr4 131104145 131104526 -53184136 + MLT1B LTR MaLR 1 388 -2 218 289 75 50 chr4 131106338 131106497 -53182165 + L2 LINE L2 1922 2084 -1230 250 309 25 80 chr4 131106595 131106757 -53181905 + L2 LINE L2 2565 2717 -597 482 294 62 52 chr4 131107037 131107343 -53181319 + L2 LINE L2 3005 3313 0 267 353 128 16 chr4 131107871 131108058 -53180604 + L2 LINE L2 2852 3059 -213 226 378 0 0 chr4 131108180 131108278 -53180384 + L2 LINE L2 3174 3271 -1 22 56 0 0 chr4 131108493 131108529 -53180133 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr4 131108585 131108607 -53180055 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr4 131108968 131108997 -53179665 + AT_rich Low_complexity Low_complexity 1 29 0 419 332 53 21 chr4 131109236 131109423 -53179239 + MIR SINE MIR 70 262 0 22 0 0 0 chr4 131109726 131109748 -53178914 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr4 131109804 131109840 -53178822 + AT_rich Low_complexity Low_complexity 1 36 0 189 147 0 0 chr4 131111676 131111710 -53176952 + (ATG)n Simple_repeat Simple_repeat 2 35 0 1906 146 0 0 chr4 131111773 131112061 -53176601 + AluSx SINE Alu 24 311 -1 1161 246 57 17 chr4 131113327 131113729 -53174933 - LTR52 LTR ERVL -3 418 1 309 301 90 15 chr4 131113774 131113907 -53174755 - MER91A DNA MER1_type -36 160 18 1316 260 26 33 chr4 131113925 131114314 -53174348 + HERVL40 LTR ERVL 19 404 -5126 453 307 26 13 chr4 131114342 131114495 -53174167 + HERVL40 LTR ERVL 400 554 -4976 1205 196 125 18 chr4 131114625 131114905 -53173757 + AluJb SINE Alu 1 310 -2 1865 166 14 1 chr4 131114914 131115368 -53173294 + L1PA16 LINE L1 5106 5567 -599 7475 34 0 8 chr4 131115393 131116570 -53172092 + L1PA3 LINE L1 4985 6155 0 22 35 0 0 chr4 131116583 131116612 -53172050 + AT_rich Low_complexity Low_complexity 1 29 0 2948 164 9 20 chr4 131116644 131117200 -53171462 + L1PA16 LINE L1 5616 6165 -1 1358 322 62 52 chr4 131117243 131118082 -53170580 + HERVL40 LTR ERVL 635 1481 -4049 3727 180 113 178 chr4 131118089 131119751 -53168911 + MER52A LTR ERV1 1 1553 -202 278 248 30 40 chr4 131119773 131119874 -53168788 - LTR27 LTR ERV1 -273 363 264 348 321 9 9 chr4 131119908 131120020 -53168642 - LTR28 LTR ERV1 -841 179 68 * 497 134 0 12 chr4 131120015 131120097 -53168565 + MER52A LTR ERV1 1553 1633 -122 817 202 77 0 chr4 131120098 131120266 -53168396 + MER52A LTR ERV1 1575 1755 0 276 256 41 58 chr4 131120274 131120395 -53168267 + HERVL40 LTR ERVL 1495 1613 -3917 560 226 44 37 chr4 131120806 131121049 -53167613 - MER52A LTR ERV1 -147 895 278 702 255 8 3 chr4 131121099 131121278 -53167384 - MER52A LTR ERV1 -841 800 1 611 284 99 19 chr4 131121298 131121509 -53167153 + HERVL40 LTR ERVL 1936 2163 -3367 1149 177 67 95 chr4 131121554 131121870 -53166792 + LTR39 LTR ERV1 1 307 -476 658 264 75 0 chr4 131121938 131122112 -53166550 + LTR39 LTR ERV1 597 783 0 373 263 36 59 chr4 131122112 131122453 -53166209 - L1M4 LINE L1 -1390 4756 4368 180 77 0 0 chr4 131122457 131122483 -53166179 + (TGGG)n Simple_repeat Simple_repeat 3 28 0 2766 196 45 40 chr4 131122530 131123223 -53165439 - L1MB1 LINE L1 0 6168 5473 * 4771 135 65 7 chr4 131123210 131124091 -53164571 - L1PA16 LINE L1 0 6166 5235 1862 140 60 30 chr4 131124091 131124455 -53164207 + THE1C LTR MaLR 1 375 0 2705 121 29 3 chr4 131124455 131124925 -53163737 + THE1C-int LTR MaLR 1 480 -1150 * 6039 231 42 10 chr4 131124924 131126565 -53162097 - L1MB1 LINE L1 -1377 4769 3077 511 247 19 19 chr4 131126567 131126721 -53161941 - L1PA15-16 LINE L1 -4612 2237 2084 435 38 0 0 chr4 131126843 131126896 -53161766 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 186 43 0 0 chr4 131126896 131126919 -53161743 + (CATA)n Simple_repeat Simple_repeat 1 23 0 25 31 0 0 chr4 131127307 131127339 -53161323 + AT_rich Low_complexity Low_complexity 1 32 0 1824 201 32 35 chr4 131127581 131128013 -53160649 + Tigger2a DNA MER2_type 4 434 0 22 70 0 0 chr4 131130117 131130160 -53158502 + AT_rich Low_complexity Low_complexity 1 43 0 345 47 0 0 chr4 131131836 131131879 -53156783 + (CA)n Simple_repeat Simple_repeat 2 44 0 21 36 0 0 chr4 131132231 131132259 -53156403 + AT_rich Low_complexity Low_complexity 1 28 0 2110 87 21 3 chr4 131132378 131132664 -53155998 + AluSc SINE Alu 1 291 -18 1580 214 49 30 chr4 131132824 131133230 -53155432 + MLT2D LTR ERVL 1 414 0 11570 216 46 38 chr4 131133230 131136023 -53152639 + ERVL-D LTR ERVL 1 2945 -2819 298 122 0 0 chr4 131136023 131136072 -53152590 + MADE1 DNA Mariner 1 49 -31 11570 216 46 38 chr4 131136072 131136458 -53152204 + ERVL-D LTR ERVL 2945 3326 -2438 26 64 0 0 chr4 131136462 131136509 -53152153 + AT_rich Low_complexity Low_complexity 1 47 0 4205 180 38 54 chr4 131136512 131137527 -53151135 - L1MA8 LINE L1 -11 6280 5282 1892 214 22 99 chr4 131137526 131138151 -53150511 - L1M3e LINE L1 -6447 583 7 * 6077 199 31 12 chr4 131138166 131140151 -53148511 + ERVL-D LTR ERVL 3353 5423 -341 375 23 0 0 chr4 131140161 131140205 -53148457 + (CA)n Simple_repeat Simple_repeat 1 44 0 335 333 16 8 chr4 131140205 131140328 -53148334 - HERVL40 LTR ERVL -1823 3707 3584 354 246 31 46 chr4 131140337 131140467 -53148195 - HERVL40 LTR ERVL -2190 3340 3213 1320 238 69 34 chr4 131140658 131140685 -53147977 - HERVL40 LTR ERVL -2007 1030 1005 1596 174 60 30 chr4 131140685 131140984 -53147678 - AluJo SINE Alu -4 308 1 1320 238 69 34 chr4 131140984 131141371 -53147291 - HERVL40 LTR ERVL -2032 1005 897 722 305 64 4 chr4 131141445 131141678 -53146984 - HERVL40 LTR ERVL -3233 2297 2051 430 290 13 26 chr4 131141683 131141838 -53146824 - HERVL40 LTR ERVL -3918 1612 1460 282 303 119 27 chr4 131142069 131142264 -53146398 + LTR40a LTR ERVL 234 460 -59 809 49 31 31 chr4 131142264 131142426 -53146236 + (TCTA)n Simple_repeat Simple_repeat 1 162 0 282 303 119 27 chr4 131142426 131142491 -53146171 + LTR40a LTR ERVL 460 518 -1 402 125 0 2 chr4 131142570 131142632 -53146030 - HERVL40 LTR ERVL -672 5013 4922 344 325 0 0 chr4 131142652 131142732 -53145930 - HERVL40 LTR ERVL -4170 1360 1281 400 169 0 13 chr4 131143173 131143250 -53145412 + L1MB1 LINE L1 6096 6171 -18 383 299 53 76 chr4 131143727 131144032 -53144630 - L1ME LINE L1 -362 5759 5462 27 29 0 0 chr4 131144209 131144243 -53144419 + AT_rich Low_complexity Low_complexity 1 34 0 4552 71 47 3 chr4 131144411 131145033 -53143629 + L1PA8 LINE L1 5517 6165 -7 905 267 23 16 chr4 131147509 131147816 -53140846 - L1ME2 LINE L1 -8 6156 5848 330 296 99 40 chr4 131148645 131148868 -53139794 + L1MC4a LINE L1 2676 2911 -3235 606 243 117 18 chr4 131148870 131149092 -53139570 + L1MC4a LINE L1 5539 5782 -2026 2462 90 122 5 chr4 131149096 131149497 -53139165 + LTR7 LTR ERV1 1 448 -2 19929 91 28 18 chr4 131149499 131152460 -53136202 + HERVH LTR ERV1 1 2992 -4721 5910 102 3 2 chr4 131152446 131153299 -53135363 + HERVH LTR ERV1 3140 3993 -3720 * 4235 163 0 1 chr4 131153301 131153964 -53134698 + HERVH LTR ERV1 4488 5149 -2564 1278 136 28 0 chr4 131153965 131154179 -53134483 + HERVH LTR ERV1 5600 5819 -1894 2342 106 48 13 chr4 131154179 131154556 -53134106 + HERVH LTR ERV1 7324 7713 0 2508 73 128 5 chr4 131154556 131154955 -53133707 + LTR7 LTR ERV1 1 448 -2 1482 234 101 86 chr4 131154962 131155924 -53132738 + L1MC4a LINE L1 5781 6756 -1052 1292 273 131 22 chr4 131155931 131156521 -53132141 + L1MC4a LINE L1 7154 7807 -1 23 0 0 0 chr4 131156522 131156545 -53132117 + AT_rich Low_complexity Low_complexity 1 23 0 657 314 45 104 chr4 131156757 131157398 -53131264 + L2 LINE L2 2295 2897 -417 320 293 30 53 chr4 131157583 131157608 -53131054 + L2 LINE L2 3180 3204 -109 1698 198 61 34 chr4 131157608 131158053 -53130609 + MSTB2 LTR MaLR 1 457 0 320 293 30 53 chr4 131158053 131158160 -53130502 + L2 LINE L2 3204 3309 -4 2731 149 14 22 chr4 131158172 131158616 -53130046 + L1P3 LINE L1 1 440 -6021 6686 62 15 3 chr4 131158617 131160100 -53128562 + L1PA7 LINE L1 4651 6143 -11 477 176 8 16 chr4 131160109 131160234 -53128428 + GA-rich Low_complexity Low_complexity 3 126 0 2867 16 0 0 chr4 131160892 131161207 -53127455 - AluYb8 SINE Alu -3 315 1 2434 71 0 0 chr4 131162659 131162969 -53125693 - AluY SINE Alu -1 310 1 22 0 0 0 chr4 131163135 131163157 -53125505 + AT_rich Low_complexity Low_complexity 1 22 0 5988 113 4 13 chr4 131163566 131164157 -53124505 - L1PB1 LINE L1 -5 6146 5565 3599 148 37 93 chr4 131164157 131164988 -53123674 + LTR1 LTR ERV1 1 785 0 5988 113 4 13 chr4 131164988 131165376 -53123286 - L1PB1 LINE L1 -586 5565 5175 209 271 104 52 chr4 131166159 131166255 -53122407 + L2 LINE L2 3171 3271 -1 23 0 0 0 chr4 131166374 131166397 -53122265 + AT_rich Low_complexity Low_complexity 1 23 0 1047 265 164 48 chr4 131166494 131167037 -53121625 - MLT1E2 LTR MaLR -10 616 11 21 0 0 0 chr4 131167698 131167719 -53120943 + AT_rich Low_complexity Low_complexity 1 21 0 1199 227 73 51 chr4 131167857 131168351 -53120311 + L1M4 LINE L1 4224 4728 -1418 362 363 47 26 chr4 131170035 131170269 -53118393 + MIR SINE MIR 23 261 -1 372 59 0 0 chr4 131171027 131171078 -53117584 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 303 28 0 0 chr4 131171497 131171533 -53117129 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 400 234 97 21 chr4 131171618 131171763 -53116899 - LTR52 LTR ERVL -265 156 1 1964 114 10 42 chr4 131171936 131172244 -53116418 - AluSp SINE Alu -14 299 2 27 29 0 0 chr4 131172434 131172468 -53116194 + AT_rich Low_complexity Low_complexity 1 34 0 674 328 98 18 chr4 131173073 131173470 -53115192 + L2 LINE L2 1533 1961 -1353 2385 82 0 0 chr4 131173475 131173778 -53114884 + AluY SINE Alu 1 303 -8 314 116 0 0 chr4 131174237 131174280 -53114382 + MLT1B LTR MaLR 3 45 -345 1343 263 48 12 chr4 131174280 131174699 -53113963 - MER57B LTR ERV1 0 434 1 25 0 0 0 chr4 131175532 131175557 -53113105 + AT_rich Low_complexity Low_complexity 1 25 0 321 151 19 9 chr4 131176237 131176343 -53112319 + (TA)n Simple_repeat Simple_repeat 1 107 0 381 294 39 65 chr4 131176709 131176988 -53111674 - PRIMA41-int LTR ERV1 -1671 2976 2705 2590 139 114 21 chr4 131177555 131178071 -53110591 + LTR6A LTR ERV1 1 564 0 1143 298 19 35 chr4 131178103 131178589 -53110073 - PRIMA41-int LTR ERV1 -1775 5762 5285 2187 126 0 7 chr4 131179587 131179896 -53108766 + AluSq SINE Alu 7 313 0 11054 238 32 19 chr4 131180463 131180566 -53108096 - L1PB4 LINE L1 -13 6845 6745 2488 149 41 5 chr4 131180566 131180981 -53107681 - MER61C LTR ERV1 -4 430 1 11054 238 32 19 chr4 131180981 131181135 -53107527 - L1PB4 LINE L1 -113 6745 6594 189 0 0 0 chr4 131181135 131181156 -53107506 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 11054 238 32 19 chr4 131181156 131184079 -53104583 - L1PB4 LINE L1 -264 6594 3710 1856 166 6 19 chr4 131184079 131184392 -53104270 - AluSx SINE Alu -3 309 1 11054 238 32 19 chr4 131184392 131185824 -53102838 - L1PB4 LINE L1 -3148 3710 2195 2401 166 22 0 chr4 131185824 131186241 -53102421 - MSTA LTR MaLR -2 426 1 11054 238 32 19 chr4 131186241 131187406 -53101256 - L1PB4 LINE L1 -4663 2195 1047 510 351 72 57 chr4 131188055 131188585 -53100077 - L1PB4 LINE L1 -6302 547 10 324 260 0 31 chr4 131188590 131188686 -53099976 - PRIMA41-int LTR ERV1 -4360 3396 3304 3124 150 17 2 chr4 131189347 131189873 -53098789 + L1PA16 LINE L1 5622 6155 -11 1157 216 32 32 chr4 131192080 131192358 -53096304 + AluJb SINE Alu 15 292 -20 24 0 0 0 chr4 131193111 131193135 -53095527 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr4 131193286 131193314 -53095348 + AT_rich Low_complexity Low_complexity 1 28 0 1106 259 201 23 chr4 131193367 131193804 -53094858 - MER101B LTR ERV1 -32 538 24 249 275 76 70 chr4 131193877 131194048 -53094614 - MER89 LTR ERV1 -37 522 351 1334 59 0 0 chr4 131194477 131194646 -53094016 - L1PA4 LINE L1 -3 6152 5984 943 18 0 9 chr4 131194646 131194759 -53093903 + L1PA4 LINE L1 5764 5875 -280 23 0 0 0 chr4 131194876 131194899 -53093763 + AT_rich Low_complexity Low_complexity 1 23 0 42 20 0 0 chr4 131195316 131195365 -53093297 + AT_rich Low_complexity Low_complexity 1 49 0 2064 110 3 14 chr4 131195447 131195737 -53092925 + AluSx SINE Alu 1 287 -25 198 0 0 0 chr4 131195737 131195759 -53092903 + (TA)n Simple_repeat Simple_repeat 2 23 0 8697 204 28 17 chr4 131195821 131198983 -53089679 - L1PA16 LINE L1 -2 6164 2952 582 317 110 34 chr4 131199714 131200187 -53088475 + HAL1 LINE L1 917 1425 -1082 603 164 8 23 chr4 131200187 131200315 -53088347 + L1PB4 LINE L1 6030 6155 -1 259 321 0 0 chr4 131200348 131200429 -53088233 + (TA)n Simple_repeat Simple_repeat 1 81 0 21 57 0 0 chr4 131200543 131200578 -53088084 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr4 131200632 131200662 -53088000 + AT_rich Low_complexity Low_complexity 1 30 0 184 237 92 53 chr4 131201879 131201955 -53086707 - MER5B DNA MER1_type -27 151 73 2591 173 59 4 chr4 131201991 131202516 -53086146 - L1MC1 LINE L1 -18 6315 5762 840 231 11 73 chr4 131202542 131202815 -53085847 + L1M4 LINE L1 4590 4845 -1301 3477 227 21 37 chr4 131202827 131204493 -53084169 - L1MC1 LINE L1 -559 5785 4159 231 297 0 14 chr4 131204516 131204590 -53084072 - L1MC1 LINE L1 -1981 4165 4093 489 195 0 0 chr4 131204592 131204679 -53083983 + AluJ/FLAM SINE Alu 7 93 -219 340 285 55 48 chr4 131204725 131204890 -53083772 - HERV16 LTR ERVL -700 4296 4131 546 336 30 17 chr4 131205839 131206071 -53082591 - HERV16 LTR ERVL -2738 2258 2024 1874 153 159 8 chr4 131206251 131206623 -53082039 + MSTA LTR MaLR 1 428 0 1062 355 61 23 chr4 131206997 131208031 -53080631 - HERV16 LTR ERVL -3582 1414 329 1028 306 60 32 chr4 131208330 131208389 -53080273 - LTR16B LTR ERVL -21 443 387 1979 91 0 88 chr4 131208389 131208730 -53079932 + AluY SINE Alu 1 311 0 1028 306 60 32 chr4 131208730 131209101 -53079561 - LTR16B LTR ERVL -77 387 1 316 388 36 0 chr4 131210001 131210166 -53078496 + ERVL LTR ERVL 1498 1668 -4096 295 395 0 0 chr4 131210270 131210389 -53078273 + ERVL LTR ERVL 1725 1843 -3153 364 336 98 36 chr4 131210512 131210786 -53077876 + ERVL LTR ERVL 2968 3258 -2396 508 355 59 31 chr4 131210998 131211421 -53077241 + ERVL LTR ERVL 3495 3929 -1725 300 323 15 30 chr4 131212002 131212135 -53076527 + LTR16C LTR ERVL 111 241 -250 230 125 27 71 chr4 131212168 131212280 -53076382 + (TATAA)n Simple_repeat Simple_repeat 5 111 0 539 215 0 0 chr4 131212354 131212475 -53076187 + L1MA10 LINE L1 6198 6318 -16 249 369 39 23 chr4 131212545 131212675 -53075987 - MER5A DNA MER1_type -57 132 1 302 289 26 0 chr4 131214224 131214300 -53074362 + MIR3 SINE MIR 83 160 -48 32 57 0 0 chr4 131215367 131215420 -53073242 + AT_rich Low_complexity Low_complexity 1 53 0 1065 251 121 3 chr4 131215727 131216050 -53072612 + MLT1A1 LTR MaLR 5 365 0 31 0 0 0 chr4 131216632 131216663 -53071999 + AT_rich Low_complexity Low_complexity 1 31 0 22 70 0 0 chr4 131217481 131217524 -53071138 + AT_rich Low_complexity Low_complexity 1 43 0 180 352 76 9 chr4 131217916 131218021 -53070641 - MIR SINE MIR -1 261 150 22 35 0 0 chr4 131218111 131218140 -53070522 + AT_rich Low_complexity Low_complexity 1 29 0 592 254 127 32 chr4 131219055 131219560 -53069102 + L1ME3A LINE L1 2393 2945 -3201 653 334 106 16 chr4 131219729 131220672 -53067990 + L1ME3A LINE L1 3222 4249 -1897 22 0 0 0 chr4 131220677 131220699 -53067963 + AT_rich Low_complexity Low_complexity 1 22 0 370 346 44 16 chr4 131220809 131220991 -53067671 + L1ME3A LINE L1 4430 4616 -1530 1145 178 0 5 chr4 131221018 131221226 -53067436 + L1MA4 LINE L1 6067 6273 -27 26 30 0 0 chr4 131221231 131221264 -53067398 + AT_rich Low_complexity Low_complexity 1 33 0 548 298 105 80 chr4 131221285 131221973 -53066689 + L1ME3A LINE L1 5461 6165 -5 1531 178 109 72 chr4 131222718 131223123 -53065539 - MSTB LTR MaLR -6 420 1 26 50 0 0 chr4 131223584 131223624 -53065038 + AT_rich Low_complexity Low_complexity 1 40 0 287 367 33 39 chr4 131224490 131224795 -53063867 - MLT1K LTR MaLR -113 475 173 39551 92 6 5 chr4 131224802 131230213 -53058449 - HERV9 LTR ERV1 -2947 5452 40 3783 87 182 12 chr4 131230226 131230814 -53057848 - LTR12 LTR ERV1 0 688 1 316 351 15 15 chr4 131230965 131231099 -53057563 - MLT1K LTR MaLR -266 322 189 1780 259 21 42 chr4 131231308 131231876 -53056786 + LTR38 LTR ERV1 1 556 0 3614 215 41 32 chr4 131231876 131232686 -53055976 + LTR38-int LTR ERV1 1 817 -969 283 202 106 64 chr4 131233301 131233395 -53055267 + PABL_B-int LTR ERV1 656 753 -6369 3926 333 61 57 chr4 131233780 131235865 -53052797 + PABL_B-int LTR ERV1 906 2980 -4142 1804 76 0 8 chr4 131235865 131236103 -53052559 + AluY SINE Alu 76 311 0 3926 333 61 57 chr4 131236103 131238554 -53050108 + PABL_B-int LTR ERV1 2980 5463 -1659 1203 298 68 57 chr4 131238740 131239660 -53049002 + PABL_B-int LTR ERV1 6326 7256 -500 2206 163 24 17 chr4 131239662 131240079 -53048583 + L1 LINE L1 4056 4475 -1671 2029 146 8 30 chr4 131240699 131241062 -53047600 + THE1A LTR MaLR 1 355 0 6388 104 5 4 chr4 131241062 131241982 -53046680 + THE1A-int LTR MaLR 1 921 -659 439 208 0 0 chr4 131241982 131242059 -53046603 - LTR9B LTR ERV1 -265 379 303 253 222 0 0 chr4 131242223 131242277 -53046385 - MER3 DNA MER1_type -151 58 5 24 0 0 0 chr4 131242402 131242426 -53046236 + AT_rich Low_complexity Low_complexity 1 24 0 3119 122 34 2 chr4 131243757 131244251 -53044411 - MER75 DNA T2_type -4 510 1 246 323 32 0 chr4 131244602 131244695 -53043967 + MER2 DNA MER2_type 3 98 -247 1259 267 71 57 chr4 131244740 131245835 -53042827 - L1MEc LINE L1 -3133 3082 1996 302 253 166 16 chr4 131245885 131246138 -53042524 - L1MEc LINE L1 -4482 1914 1624 661 270 109 43 chr4 131246329 131247006 -53041656 - L1MEc LINE L1 -4995 1401 680 400 127 0 0 chr4 131247073 131247136 -53041526 + MER41A LTR ERV1 402 464 -90 494 335 79 43 chr4 131247146 131247474 -53041188 - MLT1H1 LTR MaLR -38 517 178 675 368 35 20 chr4 131247646 131248189 -53040473 - L1MEc LINE L1 -5753 643 93 22 35 0 0 chr4 131248220 131248249 -53040413 + AT_rich Low_complexity Low_complexity 1 29 0 2589 251 30 66 chr4 131248313 131249157 -53039505 - L1MEc LINE L1 -2742 3473 2756 2394 81 3 0 chr4 131249157 131249465 -53039197 - AluY SINE Alu -2 309 1 2589 251 30 66 chr4 131249465 131250163 -53038499 - L1MEc LINE L1 -3459 2756 2034 1853 116 0 0 chr4 131250341 131250591 -53038071 - AluSx SINE Alu -62 250 1 1771 131 91 26 chr4 131250937 131251289 -53037373 + THE1C LTR MaLR 1 375 0 8924 142 60 7 chr4 131251289 131252785 -53035877 + THE1C-int LTR MaLR 5 1580 0 1683 151 81 31 chr4 131252785 131253142 -53035520 + THE1C LTR MaLR 1 375 0 384 263 63 58 chr4 131253439 131253644 -53035018 - L1M4 LINE L1 -3033 3113 2908 186 103 0 0 chr4 131253645 131253674 -53034988 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 534 250 0 17 chr4 131253676 131253792 -53034870 - FLAM_C SINE Alu -29 114 1 392 222 22 11 chr4 131253848 131253938 -53034724 - Charlie5 DNA MER1_type -2520 92 2 22 0 0 0 chr4 131254117 131254139 -53034523 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 131254278 131254308 -53034354 + AT_rich Low_complexity Low_complexity 1 30 0 2168 101 7 0 chr4 131255234 131255522 -53033140 - AluSg SINE Alu -20 290 1 227 204 20 0 chr4 131255841 131255890 -53032772 + MIR SINE MIR 184 233 -29 654 162 49 0 chr4 131256547 131256689 -53031973 - L1MB7 LINE L1 -8 6176 6028 2271 249 41 18 chr4 131256726 131257634 -53031028 - L1MB7 LINE L1 -238 5946 5010 353 309 40 7 chr4 131257628 131257777 -53030885 + L1M4c LINE L1 1664 1817 -4567 * 223 204 93 0 chr4 131258818 131258872 -53029790 - L2 LINE L2 -1 3312 3254 266 244 49 0 chr4 131259148 131259230 -53029432 - L1MB8 LINE L1 -200 5978 5893 23 78 0 0 chr4 131259561 131259612 -53029050 + AT_rich Low_complexity Low_complexity 1 51 0 205 92 105 0 chr4 131260125 131260201 -53028461 + (TA)n Simple_repeat Simple_repeat 1 84 0 347 221 32 25 chr4 131260211 131260369 -53028293 + (TTATA)n Simple_repeat Simple_repeat 5 163 0 489 224 116 43 chr4 131260373 131260411 -53028251 + MER114 LTR ERV 358 392 -256 1469 164 7 32 chr4 131260411 131260691 -53027971 - AluSx SINE Alu -16 296 24 489 224 116 43 chr4 131260691 131260884 -53027778 + MER114 LTR ERV 392 606 -42 21 0 0 0 chr4 131260909 131260930 -53027732 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 131261981 131262004 -53026658 + AT_rich Low_complexity Low_complexity 1 23 0 201 289 132 58 chr4 131262377 131262498 -53026164 - L2 LINE L2 -928 2386 2257 35 71 0 0 chr4 131262609 131262679 -53025983 + AT_rich Low_complexity Low_complexity 1 70 0 35 63 0 0 chr4 131262730 131262793 -53025869 + AT_rich Low_complexity Low_complexity 1 63 0 21 0 0 0 chr4 131263456 131263477 -53025185 + AT_rich Low_complexity Low_complexity 1 21 0 581 222 126 0 chr4 131263491 131263626 -53025036 + FRAM SINE Alu 1 152 -14 2004 199 23 8 chr4 131264371 131264769 -53023893 - MER65A LTR ERV1 -2 443 40 1278 263 28 20 chr4 131264844 131265202 -53023460 - MER65A-int LTR ERV1 -17 4854 4494 337 89 18 0 chr4 131265212 131265268 -53023394 + L1MA1 LINE L1 6246 6302 0 491 229 23 0 chr4 131265298 131265429 -53023233 - MER65A-int LTR ERV1 -340 4531 4398 1147 296 89 5 chr4 131265456 131265838 -53022824 - MER65A-int LTR ERV1 -853 4018 3605 1538 247 78 55 chr4 131265984 131266943 -53021719 - LOR1-int LTR ERV1 -1113 5551 2752 386 302 14 27 chr4 131266951 131267173 -53021489 - LOR1-int LTR ERV1 -2729 3947 3729 188 61 61 0 chr4 131267313 131267346 -53021316 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 278 221 63 11 chr4 131267383 131267478 -53021184 - LOR1-int LTR ERV1 -6487 1633 1534 24 32 0 0 chr4 131267493 131267524 -53021138 + AT_rich Low_complexity Low_complexity 1 31 0 6317 218 57 63 chr4 131267578 131268003 -53020659 - LOR1-int LTR ERV1 -2378 2493 2067 1488 95 26 47 chr4 131268003 131268235 -53020427 + MER30 DNA MER1_type 4 230 0 6317 218 57 63 chr4 131268235 131270150 -53018512 - LOR1-int LTR ERV1 -2804 2067 115 1455 164 21 24 chr4 131270260 131270547 -53018115 - MER65A LTR ERV1 -159 286 1 1708 131 4 4 chr4 131270610 131270870 -53017792 - AluSx SINE Alu -8 304 45 1209 295 92 25 chr4 131271448 131272004 -53016658 + MLT1E LTR MaLR 1 593 0 369 131 0 0 chr4 131272783 131272844 -53015818 + L1PA16 LINE L1 6097 6157 -9 556 210 67 0 chr4 131272954 131273073 -53015589 + L1MCa LINE L1 21 147 -6279 * 1017 252 30 4 chr4 131273069 131273335 -53015327 + L1MC1 LINE L1 6054 6326 -7 2650 132 26 16 chr4 131273378 131273802 -53014860 + MSTA LTR MaLR 1 428 0 921 284 142 72 chr4 131274141 131274753 -53013909 - MER76 LTR ERV -32 656 2 23 78 0 0 chr4 131274966 131275017 -53013645 + AT_rich Low_complexity Low_complexity 1 51 0 214 149 45 0 chr4 131275021 131275088 -53013574 + (TTATA)n Simple_repeat Simple_repeat 5 74 0 21 71 0 0 chr4 131275122 131275164 -53013498 + AT_rich Low_complexity Low_complexity 1 42 0 805 270 61 9 chr4 131275527 131275768 -53012894 - MLT1F1 LTR MaLR -50 517 226 613 276 7 0 chr4 131275794 131275939 -53012723 - MLT1F1 LTR MaLR -396 146 1 304 310 76 25 chr4 131275941 131276099 -53012563 + MLT1J1 LTR MaLR 137 302 -144 382 301 28 42 chr4 131276858 131277116 -53011546 + L1M1 LINE L1 5350 5604 -599 821 254 34 60 chr4 131277295 131277699 -53010963 + MER57A LTR ERV1 39 403 0 787 180 0 51 chr4 131277722 131277900 -53010762 + MER3 DNA MER1_type 41 209 0 591 292 24 24 chr4 131278059 131278268 -53010394 - MLT1J2 LTR MaLR -241 209 1 331 267 137 20 chr4 131278289 131278435 -53010227 + MIR SINE MIR 2 164 -98 870 182 7 0 chr4 131278586 131278729 -53009933 + AluJb SINE Alu 156 299 -13 206 292 0 0 chr4 131278729 131278777 -53009885 + MIR SINE MIR 182 229 -33 369 312 63 26 chr4 131279143 131279489 -53009173 + L1ME1 LINE L1 5572 5930 -240 299 326 0 0 chr4 131281892 131281981 -53006681 + MER58A DNA MER1_type 1 89 -18 570 252 0 0 chr4 131282109 131282224 -53006438 + MER58A DNA MER1_type 109 223 -1 1852 139 7 30 chr4 131282916 131283218 -53005444 + AluSx SINE Alu 1 295 -17 252 258 67 0 chr4 131283362 131283374 -53005288 - L1MA10 LINE L1 -2 6332 6321 389 275 124 8 chr4 131283374 131283596 -53005066 - L1ME2 LINE L1 -5 6161 5920 300 193 12 48 chr4 131283626 131283709 -53004953 - L1MC4 LINE L1 -1347 6695 6616 1534 257 51 12 chr4 131283771 131284261 -53004401 - MER99 DNA DNA -57 771 263 254 248 35 50 chr4 131284279 131284420 -53004242 + L1M4 LINE L1 3648 3786 -2360 36 40 0 0 chr4 131285506 131285556 -53003106 + AT_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr4 131285751 131285774 -53002888 + AT_rich Low_complexity Low_complexity 1 23 0 301 353 72 0 chr4 131285939 131286078 -53002584 + MIR SINE MIR 2 150 -112 24 53 0 0 chr4 131286149 131286187 -53002475 + AT_rich Low_complexity Low_complexity 1 38 0 792 329 114 17 chr4 131286227 131286726 -53001936 - L2 LINE L2 -251 3062 2527 304 214 60 24 chr4 131286774 131286858 -53001804 + L1MDa LINE L1 1162 1248 -5178 249 173 39 0 chr4 131286875 131286927 -53001735 - U2 snRNA snRNA -134 54 1 334 284 110 69 chr4 131286965 131287359 -53001303 + L1MDa LINE L1 1167 1552 -4874 216 149 0 0 chr4 131287593 131287640 -53001022 + (TA)n Simple_repeat Simple_repeat 2 48 0 30 27 0 0 chr4 131287865 131287902 -53000760 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr4 131288001 131288029 -53000633 + AT_rich Low_complexity Low_complexity 1 28 0 483 158 0 0 chr4 131288290 131288366 -53000296 + MER41B LTR ERV1 560 635 0 8349 194 22 14 chr4 131288366 131288543 -53000119 + L1MA3 LINE L1 3360 3534 -2612 1592 167 167 14 chr4 131288543 131288728 -52999934 - MSTA LTR MaLR 0 428 273 183 42 0 0 chr4 131288728 131288752 -52999910 + (GA)n Simple_repeat Simple_repeat 1 24 0 1592 167 167 14 chr4 131288752 131288937 -52999725 - MSTA LTR MaLR -155 273 1 8349 194 22 14 chr4 131288937 131290604 -52998058 + L1MA3 LINE L1 3534 5218 -928 4650 156 12 0 chr4 131290704 131291505 -52997157 + L1MA3 LINE L1 5487 6297 -8 337 324 99 22 chr4 131291529 131292164 -52996498 + L1M4 LINE L1 4398 5081 -1065 370 310 45 84 chr4 131292169 131292456 -52996206 - L2 LINE L2 -1421 1893 1618 23 0 0 0 chr4 131292702 131292725 -52995937 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr4 131293159 131293185 -52995477 + AT_rich Low_complexity Low_complexity 1 26 0 2445 90 0 0 chr4 131294186 131294498 -52994164 - AluSx SINE Alu 0 312 1 23 0 0 0 chr4 131294961 131294984 -52993678 + AT_rich Low_complexity Low_complexity 1 23 0 201 339 0 0 chr4 131298041 131298106 -52990556 - MIR SINE MIR -3 259 195 192 152 0 0 chr4 131298145 131298178 -52990484 + (CATATA)n Simple_repeat Simple_repeat 5 37 0 23 0 0 0 chr4 131298405 131298428 -52990234 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr4 131298519 131298550 -52990112 + AT_rich Low_complexity Low_complexity 1 31 0 236 161 18 18 chr4 131298645 131298701 -52989961 + (TA)n Simple_repeat Simple_repeat 2 57 0 24 0 0 0 chr4 131299035 131299059 -52989603 + AT_rich Low_complexity Low_complexity 1 24 0 1908 122 14 0 chr4 131299238 131299551 -52989111 + AluSc SINE Alu 1 317 0 24 91 0 0 chr4 131299677 131299743 -52988919 + AT_rich Low_complexity Low_complexity 1 66 0 230 348 17 0 chr4 131299842 131299960 -52988702 + L1M4 LINE L1 3931 4050 -2096 1414 99 5 0 chr4 131299962 131300153 -52988509 + AluSg/x SINE Alu 88 279 -33 212 57 0 29 chr4 131300156 131300191 -52988471 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 353 315 7 27 chr4 131300194 131300343 -52988319 + L1M4 LINE L1 4060 4205 -1941 332 185 41 66 chr4 131300374 131300579 -52988083 + L1M4 LINE L1 3108 3307 -2839 452 307 211 42 chr4 131300809 131301273 -52987389 - MLT1G1 LTR MaLR -61 469 4 213 297 58 29 chr4 131301284 131301422 -52987240 + L2 LINE L2 1265 1406 -1908 494 308 55 45 chr4 131301911 131302080 -52986582 - L1ME3A LINE L1 -318 5852 5686 1718 199 8 24 chr4 131302080 131302452 -52986210 - MER47A DNA MER2_type 0 366 1 494 308 55 45 chr4 131302452 131302772 -52985890 - L1ME3A LINE L1 -484 5686 5358 2599 172 8 33 chr4 131302774 131303292 -52985370 - L1PA16 LINE L1 -4 6162 5658 10196 175 28 29 chr4 131303304 131305260 -52983402 - L1PA15-16 LINE L1 -4163 2686 734 1949 118 66 0 chr4 131305316 131305604 -52983058 - AluSc SINE Alu -2 307 1 480 294 70 42 chr4 131305642 131305999 -52982663 - L1ME3A LINE L1 -870 5276 4910 260 188 0 0 chr4 131306456 131306504 -52982158 - L1M3 LINE L1 -299 5881 5834 621 337 91 19 chr4 131306947 131307374 -52981288 - HERV16 LTR ERVL -3789 1207 750 656 270 87 0 chr4 131307543 131307739 -52980923 + MER58A DNA MER1_type 12 224 0 1014 320 81 22 chr4 131307814 131308308 -52980354 + MLT1H1 LTR MaLR 1 523 -32 259 308 100 0 chr4 131308394 131308524 -52980138 - L1ME3A LINE L1 -2388 3758 3616 603 274 95 23 chr4 131308652 131309073 -52979589 - MLT1D LTR MaLR -6 499 1 315 320 45 35 chr4 131309082 131309282 -52979380 - L1ME3A LINE L1 -2689 3457 3256 276 303 13 0 chr4 131309749 131309825 -52978837 + L2 LINE L2 3237 3313 0 27 49 0 0 chr4 131309967 131310008 -52978654 + AT_rich Low_complexity Low_complexity 1 41 0 35 24 0 0 chr4 131310259 131310301 -52978361 + AT_rich Low_complexity Low_complexity 1 42 0 528 121 0 0 chr4 131310337 131310420 -52978242 + AluY SINE Alu 217 299 -12 196 158 35 18 chr4 131310766 131310823 -52977839 + GA-rich Low_complexity Low_complexity 5 62 0 4825 185 42 3 chr4 131310907 131311901 -52976761 - L1MA10 LINE L1 -3 6331 5299 796 209 12 6 chr4 131312367 131312539 -52976123 + AluJb SINE Alu 137 309 -3 30 27 0 0 chr4 131314083 131314120 -52974542 + AT_rich Low_complexity Low_complexity 1 37 0 31 0 0 0 chr4 131314178 131314209 -52974453 + AT_rich Low_complexity Low_complexity 1 31 0 222 163 23 0 chr4 131314658 131314701 -52973961 + (TAA)n Simple_repeat Simple_repeat 1 44 0 22 0 0 0 chr4 131315192 131315214 -52973448 + AT_rich Low_complexity Low_complexity 1 22 0 251 262 24 16 chr4 131315500 131315626 -52973036 + (TA)n Simple_repeat Simple_repeat 1 127 0 2138 87 6 35 chr4 131315767 131316078 -52972584 - AluY SINE Alu -4 307 6 2060 116 3 49 chr4 131316188 131316515 -52972147 + AluSx SINE Alu 1 312 0 744 254 59 46 chr4 131317410 131317800 -52970862 - L1M4 LINE L1 -1865 5700 5306 * 5266 178 31 22 chr4 131317799 131319243 -52969419 - L1M1 LINE L1 -507 5793 4322 1635 215 0 10 chr4 131319243 131319555 -52969107 - AluJb SINE Alu -3 309 1 5266 178 31 22 chr4 131319555 131319745 -52968917 - L1M1 LINE L1 -1978 4322 4135 1513 188 29 59 chr4 131319777 131320186 -52968476 - L1M4 LINE L1 -2289 5276 4880 1103 233 82 34 chr4 131320193 131320696 -52967966 - L1M4 LINE L1 -3891 3674 3148 2709 227 25 89 chr4 131320726 131320932 -52967730 - L1MC3 LINE L1 -341 7444 7226 2069 117 0 0 chr4 131320932 131321247 -52967415 + AluSq SINE Alu 3 317 0 2709 227 25 89 chr4 131321247 131321983 -52966679 - L1MC3 LINE L1 -559 7226 6561 2937 209 25 6 chr4 131322272 131322960 -52965702 + L1MB1 LINE L1 5467 6167 -1 28189 86 12 1 chr4 131323223 131326976 -52961686 + HERVK9 LTR ERVK 1492 5284 -632 1055 78 7 0 chr4 131328708 131328850 -52959812 + HERVH LTR ERV1 4768 4910 -2803 1399 172 4 15 chr4 131328850 131329123 -52959539 + HERVH LTR ERV1 5747 6016 -1697 * 2334 120 0 67 chr4 131329116 131329534 -52959128 + HERVH LTR ERV1 7157 7546 -167 22 0 0 0 chr4 131329977 131329999 -52958663 + AT_rich Low_complexity Low_complexity 1 22 0 338 316 53 0 chr4 131330567 131330700 -52957962 + HAL1 LINE L1 1504 1643 -864 26 0 0 0 chr4 131331284 131331310 -52957352 + AT_rich Low_complexity Low_complexity 1 26 0 440 265 50 20 chr4 131331707 131331907 -52956755 - HsTC2 DNA Tc2 -16 1882 1677 4128 194 37 16 chr4 131332134 131333033 -52955629 - L1MC1 LINE L1 -145 6188 5271 632 330 35 31 chr4 131333131 131333392 -52955270 + L2 LINE L2 995 1256 -2058 26 30 0 0 chr4 131333796 131333829 -52954833 + AT_rich Low_complexity Low_complexity 1 33 0 31 58 0 0 chr4 131335463 131335515 -52953147 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr4 131335539 131335560 -52953102 + AT_rich Low_complexity Low_complexity 1 21 0 1047 158 40 0 chr4 131335565 131335742 -52952920 + L1PA16 LINE L1 5776 5959 -207 1068 172 0 108 chr4 131335909 131335953 -52952709 + L1PA16 LINE L1 5931 5978 -188 2276 101 0 22 chr4 131335953 131336270 -52952392 + AluSg SINE Alu 1 310 0 1068 172 0 108 chr4 131336270 131336475 -52952187 + L1PA16 LINE L1 5978 6153 -13 218 230 14 27 chr4 131336610 131336684 -52951978 + CT-rich Low_complexity Low_complexity 3 75 0 651 300 58 21 chr4 131337186 131337429 -52951233 + MLT1I LTR MaLR 85 336 -73 23 0 0 0 chr4 131337442 131337465 -52951197 + AT_rich Low_complexity Low_complexity 1 23 0 278 93 0 148 chr4 131337846 131337900 -52950762 - MLT2D LTR ERVL -3 517 366 201 211 0 0 chr4 131337907 131337959 -52950703 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 614 251 73 106 chr4 131337959 131338289 -52950373 - MLT2D LTR ERVL -53 411 93 2213 93 3 0 chr4 131338326 131338616 -52950046 + AluSg SINE Alu 1 291 -19 3497 113 86 22 chr4 131338630 131339689 -52948973 - MER11A LTR ERVK 0 1236 1 181 214 0 71 chr4 131340300 131340356 -52948306 - MIR3 SINE MIR -34 174 123 1799 147 35 3 chr4 131340634 131340919 -52947743 - AluSx SINE Alu -18 294 1 1213 141 0 0 chr4 131341924 131342101 -52946561 - AluSg/x SINE Alu -16 296 120 717 219 34 0 chr4 131342185 131342331 -52946331 + FRAM SINE Alu 2 152 -24 26 0 0 0 chr4 131342331 131342357 -52946305 + AT_rich Low_complexity Low_complexity 1 26 0 212 333 140 0 chr4 131342357 131342450 -52946212 + L2 LINE L2 3208 3313 0 23 33 0 0 chr4 131343913 131343943 -52944719 + AT_rich Low_complexity Low_complexity 1 30 0 3695 153 21 6 chr4 131344841 131345454 -52943208 + Tigger1 DNA MER2_type 1 622 -1796 1733 165 80 43 chr4 131345454 131345805 -52942857 + THE1B LTR MaLR 1 364 0 10094 148 4 38 chr4 131345805 131347441 -52941221 + THE1B-int LTR MaLR 1 1580 0 1718 188 83 0 chr4 131347441 131347777 -52940885 + THE1B LTR MaLR 1 364 0 3206 152 11 4 chr4 131347778 131348319 -52940343 + Tigger1 DNA MER2_type 620 1164 -1254 1257 162 25 21 chr4 131348319 131348554 -52940108 + AluSg/x SINE Alu 76 311 -1 2318 145 16 3 chr4 131348558 131348938 -52939724 + Tigger1 DNA MER2_type 1149 1533 -885 182 311 146 56 chr4 131349059 131349326 -52939336 + L2 LINE L2 2035 2325 -989 29 78 0 0 chr4 131349326 131349390 -52939272 + AT_rich Low_complexity Low_complexity 1 64 0 34 84 0 0 chr4 131350242 131350325 -52938337 + AT_rich Low_complexity Low_complexity 1 83 0 224 159 29 29 chr4 131350338 131350407 -52938255 + (TA)n Simple_repeat Simple_repeat 1 69 0 22 0 0 0 chr4 131350655 131350677 -52937985 + AT_rich Low_complexity Low_complexity 1 22 0 419 354 57 0 chr4 131352969 131353215 -52935447 - L1MEc LINE L1 -6026 370 111 1236 140 105 129 chr4 131353539 131353881 -52934781 - MER44D DNA MER2_type -4 605 2 1959 221 118 46 chr4 131354061 131354835 -52933827 + LTR28 LTR ERV1 1 1018 -2 1165 154 5 0 chr4 131354837 131355038 -52933624 + Tigger1 DNA MER2_type 47 248 -2170 25 65 0 0 chr4 131355651 131355697 -52932965 + AT_rich Low_complexity Low_complexity 1 46 0 204 143 50 76 chr4 131355744 131355863 -52932799 + (CATATA)n Simple_repeat Simple_repeat 2 117 0 21 0 0 0 chr4 131356749 131356770 -52931892 + AT_rich Low_complexity Low_complexity 1 21 0 1060 134 6 0 chr4 131356857 131357021 -52931641 - AluSg/x SINE Alu -17 293 129 27 0 0 0 chr4 131357183 131357210 -52931452 + AT_rich Low_complexity Low_complexity 1 27 0 23 33 0 0 chr4 131357320 131357350 -52931312 + AT_rich Low_complexity Low_complexity 1 30 0 180 152 0 0 chr4 131357511 131357544 -52931118 + CT-rich Low_complexity Low_complexity 2 34 0 1289 152 32 5 chr4 131357951 131358168 -52930494 - L1PA15 LINE L1 -21 6144 5922 * 1726 142 17 23 chr4 131358164 131358466 -52930196 - L1PA15 LINE L1 -519 5646 5347 6135 77 7 1 chr4 131358646 131359502 -52929160 + L1P LINE L1 2838 3698 -2448 37 23 0 0 chr4 131359657 131359701 -52928961 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr4 131360577 131360599 -52928063 + AT_rich Low_complexity Low_complexity 1 22 0 261 146 0 0 chr4 131361291 131361339 -52927323 + (TC)n Simple_repeat Simple_repeat 1 48 0 25 0 0 0 chr4 131361698 131361723 -52926939 + AT_rich Low_complexity Low_complexity 1 25 0 23 68 0 0 chr4 131361762 131361806 -52926856 + AT_rich Low_complexity Low_complexity 1 44 0 1113 253 77 33 chr4 131362843 131363132 -52925530 + MLT1C LTR MaLR 20 336 -131 2004 158 39 8 chr4 131363132 131363492 -52925170 - THE1C LTR MaLR -4 371 1 1113 253 77 33 chr4 131363492 131363629 -52925033 + MLT1C LTR MaLR 336 465 -2 885 198 143 50 chr4 131364515 131364773 -52923889 + AluJo SINE Alu 5 286 -16 227 305 19 29 chr4 131365526 131365631 -52923031 - L1M2 LINE L1 -383 5917 5814 715 182 59 21 chr4 131365649 131365836 -52922826 - L1MA8 LINE L1 -11 6280 6087 726 312 99 13 chr4 131365912 131366676 -52921986 - L1ME LINE L1 -460 5771 4950 1176 241 57 24 chr4 131366837 131367181 -52921481 + MLT1A1 LTR MaLR 1 390 0 1123 303 103 76 chr4 131367186 131367827 -52920835 - L1ME LINE L1 -1437 4778 4156 2145 104 10 3 chr4 131367827 131368135 -52920527 + AluY SINE Alu 1 310 -1 1123 303 103 76 chr4 131368135 131368158 -52920504 - L1ME LINE L1 -2059 4156 4135 1939 211 36 2 chr4 131368158 131368570 -52920092 + MSTB LTR MaLR 1 426 0 1123 303 103 76 chr4 131368570 131369136 -52919526 - L1ME LINE L1 -2080 4135 3586 2151 87 4 0 chr4 131369136 131369412 -52919250 - AluSg SINE Alu -15 295 19 1123 303 103 76 chr4 131369412 131369698 -52918964 - L1ME LINE L1 -2629 3586 3309 896 191 12 0 chr4 131369698 131369860 -52918802 - FAM SINE Alu -8 167 4 1123 303 103 76 chr4 131369860 131370163 -52918499 - L1ME LINE L1 -2906 3309 2907 300 259 138 0 chr4 131370178 131370294 -52918368 - L1ME LINE L1 -4138 2258 2127 328 271 54 48 chr4 131370665 131370831 -52917831 - L1M4 LINE L1 -3847 2535 2369 315 325 62 14 chr4 131371591 131371880 -52916782 - L1M4 LINE L1 -4775 1609 1307 5192 172 25 11 chr4 131372182 131373228 -52915434 - L1MA4 LINE L1 -5 6295 5234 51 31 0 0 chr4 131373824 131373889 -52914773 + AT_rich Low_complexity Low_complexity 1 65 0 243 0 0 0 chr4 131373977 131374004 -52914658 + (CA)n Simple_repeat Simple_repeat 2 28 0 24 53 0 0 chr4 131374580 131374618 -52914044 + AT_rich Low_complexity Low_complexity 1 38 0 198 328 82 33 chr4 131375039 131375161 -52913501 - MIR3 SINE MIR -30 178 51 209 368 44 35 chr4 131375750 131375864 -52912798 - MER91A DNA MER1_type -52 144 30 903 198 88 153 chr4 131376912 131377311 -52911351 - MLT1A2 LTR MaLR -1 373 1 337 206 0 0 chr4 131378093 131378156 -52910506 + MER61A LTR ERV1 1 63 -280 1120 148 30 25 chr4 131378184 131378386 -52910276 + MER61A LTR ERV1 141 343 0 2204 184 56 24 chr4 131378386 131378837 -52909825 + MER61A-int LTR ERV1 1 473 -4744 186 43 0 0 chr4 131378837 131378860 -52909802 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2204 184 56 24 chr4 131378860 131378940 -52909722 + MER61A-int LTR ERV1 473 549 -4668 270 210 16 16 chr4 131378944 131379006 -52909656 + MER61-int LTR ERV1 2556 2617 -4801 266 191 0 0 chr4 131379008 131379055 -52909607 + MER61-int LTR ERV1 731 777 -4440 9688 131 33 22 chr4 131379094 131381246 -52907416 + MER61-int LTR ERV1 1413 4537 -478 989 77 8 0 chr4 131381246 131381376 -52907286 - AluSg/x SINE Alu -6 306 176 212 271 86 14 chr4 131381392 131381462 -52907200 + MIR SINE MIR 80 154 -108 224 303 15 0 chr4 131383130 131383196 -52905466 - MER5A DNA MER1_type -22 167 101 21 0 0 0 chr4 131385485 131385506 -52903156 + AT_rich Low_complexity Low_complexity 1 21 0 252 86 0 0 chr4 131386697 131386732 -52901930 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 2008 154 0 3 chr4 131387049 131387354 -52901308 + AluSx SINE Alu 1 304 -8 1985 116 40 111 chr4 131387961 131388357 -52900305 - MER51B LTR ERV1 -9 368 1 2178 152 3 0 chr4 131388369 131388704 -52899958 - MER51B-int LTR ERV1 -11 7805 7470 631 211 23 0 chr4 131388704 131388837 -52899825 - LTR54B LTR ERV1 -357 141 6 8114 131 29 2 chr4 131388838 131390282 -52898380 - MER51B-int LTR ERV1 -387 7150 5620 475 120 109 11 chr4 131390272 131390364 -52898298 - MER51B-int LTR ERV1 -2188 5349 5249 * 1933 117 13 4 chr4 131390363 131390744 -52897918 - MER51-int LTR ERV1 -2572 2645 2217 * 2085 167 161 2 chr4 131390730 131391203 -52897459 - MER51-int LTR ERV1 -2579 3367 2820 * 2461 123 59 0 chr4 131391188 131391599 -52897063 - MER51-int LTR ERV1 -4501 3315 2880 881 132 399 0 chr4 131391599 131391812 -52896850 + LTR7 LTR ERV1 1 298 -152 2552 111 0 0 chr4 131391813 131392165 -52896497 + HERVH LTR ERV1 4488 4839 -2874 1697 106 0 22 chr4 131392152 131392426 -52896236 + HERVH LTR ERV1 2561 2828 -4885 * 2553 122 0 3 chr4 131392424 131392808 -52895854 + HERVH LTR ERV1 3354 3736 -3977 1143 139 6 6 chr4 131392801 131393003 -52895659 + HERVH LTR ERV1 3962 4166 -2376 * 2769 118 14 11 chr4 131392998 131393432 -52895230 + HERVH LTR ERV1 7279 7713 0 2563 95 125 5 chr4 131393432 131393832 -52894830 + LTR7 LTR ERV1 1 448 -2 9275 164 85 62 chr4 131393843 131396563 -52892099 - MER51B-int LTR ERV1 -5033 2783 1 2155 134 79 0 chr4 131396570 131396913 -52891749 - MER51B LTR ERV1 -7 370 1 245 294 130 50 chr4 131397936 131398174 -52890488 + MLT1J1 LTR MaLR 66 322 -124 5167 136 16 41 chr4 131399214 131400394 -52888268 - L1PA14 LINE L1 -33 6128 4981 393 321 67 61 chr4 131400399 131400729 -52887933 + MLT1J LTR MaLR 162 493 -18 1109 343 103 36 chr4 131400772 131402202 -52886460 + L2 LINE L2 1289 2814 -500 250 340 43 11 chr4 131402581 131402675 -52885987 + L2 LINE L2 3217 3313 0 22 56 0 0 chr4 131402904 131402940 -52885722 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr4 131403490 131403521 -52885141 + AT_rich Low_complexity Low_complexity 1 31 0 1844 154 7 10 chr4 131404594 131404892 -52883770 + AluSx SINE Alu 1 297 -15 24 0 0 0 chr4 131406465 131406489 -52882173 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4 131406576 131406598 -52882064 + AT_rich Low_complexity Low_complexity 1 22 0 1246 255 59 80 chr4 131406666 131407091 -52881571 + L1ME1 LINE L1 5272 5704 -630 2094 118 0 3 chr4 131407091 131407380 -52881282 - AluSg SINE Alu -22 288 1 1246 255 59 80 chr4 131407380 131407867 -52880795 + L1ME1 LINE L1 5704 6334 0 369 321 0 0 chr4 131408089 131408201 -52880461 + (TA)n Simple_repeat Simple_repeat 1 112 0 1690 159 14 4 chr4 131408201 131408478 -52880184 - AluJb SINE Alu -26 286 7 225 189 61 122 chr4 131410281 131410445 -52878217 - L1M4 LINE L1 -3141 3005 2852 1619 270 56 17 chr4 131410633 131411763 -52876899 + L1ME1 LINE L1 4902 6072 -94 27 73 0 0 chr4 131411803 131411858 -52876804 + AT_rich Low_complexity Low_complexity 1 55 0 894 280 114 32 chr4 131411960 131412711 -52875951 + L1M4 LINE L1 2110 2954 -3192 2257 71 0 7 chr4 131412711 131413025 -52875637 + AluY SINE Alu 1 312 0 894 280 114 32 chr4 131413025 131413205 -52875457 + L1M4 LINE L1 2954 3118 -3028 * 1206 161 14 76 chr4 131413202 131413282 -52875380 + L1MA9 LINE L1 6035 6118 -194 1875 162 94 18 chr4 131413282 131413677 -52874985 + MSTA LTR MaLR 3 427 -1 1206 161 14 76 chr4 131413677 131413887 -52874775 + L1MA9 LINE L1 6118 6307 -5 423 296 63 11 chr4 131413960 131414230 -52874432 + L1M4 LINE L1 3184 3467 -2679 503 310 146 7 chr4 131414322 131414754 -52873908 + L1M4 LINE L1 3621 4112 -2034 22 0 0 0 chr4 131414774 131414796 -52873866 + AT_rich Low_complexity Low_complexity 1 22 0 189 244 89 0 chr4 131415265 131415310 -52873352 + L2 LINE L2 3004 3052 -220 729 122 0 16 chr4 131415841 131415964 -52872698 + AluSp/q SINE Alu 193 313 0 2577 207 28 33 chr4 131416025 131416160 -52872502 - L1MA9 LINE L1 -22 6290 6156 378 0 0 0 chr4 131416160 131416202 -52872460 + (TG)n Simple_repeat Simple_repeat 1 42 0 2577 207 28 33 chr4 131416202 131416738 -52871924 - L1MA9 LINE L1 -156 6156 5622 7568 117 13 1 chr4 131417476 131418556 -52870106 - THE1B-int LTR MaLR -484 1096 4 1286 191 7 40 chr4 131418566 131418839 -52869823 - THE1B LTR MaLR -5 359 96 13690 33 9 1 chr4 131418940 131421149 -52867513 - L1PA3 LINE L1 -261 5894 3671 1790 163 0 7 chr4 131421558 131421841 -52866821 - AluSx SINE Alu -9 303 23 27 49 0 0 chr4 131422009 131422050 -52866612 + AT_rich Low_complexity Low_complexity 1 41 0 2081 106 24 3 chr4 131422072 131422364 -52866298 - AluSq SINE Alu -15 298 1 2524 57 0 0 chr4 131422551 131422851 -52865811 - AluY SINE Alu -11 300 1 3003 174 33 43 chr4 131423347 131424303 -52864359 + L1MA6 LINE L1 4852 5796 -504 297 0 0 0 chr4 131424303 131424336 -52864326 + (CA)n Simple_repeat Simple_repeat 2 34 0 3003 174 33 43 chr4 131424336 131424425 -52864237 + L1MA6 LINE L1 5796 5884 -416 23 0 0 0 chr4 131424657 131424680 -52863982 + AT_rich Low_complexity Low_complexity 1 23 0 438 285 162 14 chr4 131424680 131425185 -52863477 - L1M4 LINE L1 -3181 2965 2386 1789 154 56 34 chr4 131425235 131425591 -52863071 - THE1B LTR MaLR 0 364 1 2486 85 3 53 chr4 131425595 131425918 -52862744 - THE1B-int LTR MaLR -4 1576 1273 1971 137 3 0 chr4 131425918 131426217 -52862445 + AluSq SINE Alu 7 306 -7 2486 85 3 53 chr4 131426217 131426268 -52862394 - THE1B-int LTR MaLR -307 1273 1221 2799 156 8 30 chr4 131426370 131426843 -52861819 - MER52A LTR ERV1 -321 1434 972 2138 152 36 14 chr4 131426853 131427209 -52861453 + THE1B LTR MaLR 1 364 0 9936 103 21 76 chr4 131427209 131428065 -52860597 + THE1B-int LTR MaLR 1 842 -738 697 177 0 0 chr4 131428065 131428178 -52860484 + AluSq/x SINE Alu 3 115 -198 9936 103 21 76 chr4 131428178 131428872 -52859790 + THE1B-int LTR MaLR 842 1572 -8 1901 161 40 15 chr4 131428972 131429296 -52859366 + THE1B LTR MaLR 33 364 0 2281 243 162 19 chr4 131429297 131430008 -52858654 - MER52A LTR ERV1 -860 895 1 541 195 0 62 chr4 131430426 131430554 -52858108 + FLAM_A SINE Alu 1 120 -13 397 156 21 0 chr4 131430554 131430650 -52858012 + (TA)n Simple_repeat Simple_repeat 1 98 0 4648 196 12 24 chr4 131431431 131432179 -52856483 + L1 LINE L1 3455 4189 -1957 2459 64 3 0 chr4 131432179 131432476 -52856186 - AluY SINE Alu -13 298 1 4648 196 12 24 chr4 131432476 131432777 -52855885 + L1 LINE L1 4189 4492 -1654 776 252 29 9 chr4 131432969 131433179 -52855483 - MLT1D LTR MaLR -2 503 290 1352 160 28 35 chr4 131433504 131433792 -52854870 + MLT1A2-int LTR MaLR 1396 1681 -54 1764 182 64 31 chr4 131433792 131434115 -52854547 + MLT1A2 LTR MaLR 1 339 -35 1577 196 153 3 chr4 131434115 131434487 -52854175 - MSTA LTR MaLR 0 428 1 1764 182 64 31 chr4 131434487 131434520 -52854142 + MLT1A2 LTR MaLR 339 369 -5 23 33 0 0 chr4 131435010 131435040 -52853622 + AT_rich Low_complexity Low_complexity 1 30 0 1763 169 0 7 chr4 131435041 131435319 -52853343 - AluJo SINE Alu -24 288 13 311 341 0 0 chr4 131435426 131435517 -52853145 - L1MEc LINE L1 -4599 1797 1707 818 271 12 43 chr4 131437832 131438046 -52850616 + MLT1D LTR MaLR 255 461 -44 1767 179 87 45 chr4 131438046 131438426 -52850236 + MSTD LTR MaLR 1 396 0 818 271 12 43 chr4 131438426 131438466 -52850196 + MLT1D LTR MaLR 461 501 -4 26 39 0 20 chr4 131438574 131438595 -52850067 + AT_rich Low_complexity Low_complexity 1 21 -29 1671 201 20 0 chr4 131438595 131438894 -52849768 + AluJo SINE Alu 1 305 -7 26 39 0 20 chr4 131438894 131438923 -52849739 + AT_rich Low_complexity Low_complexity 21 50 0 1106 288 57 56 chr4 131438938 131439039 -52849623 + L1M4 LINE L1 1056 1155 -5670 1653 193 11 0 chr4 131439039 131439319 -52849343 + AluSx SINE Alu 1 283 -29 1106 288 57 56 chr4 131439319 131440259 -52848403 + L1M4 LINE L1 1155 2247 -4578 40 21 0 0 chr4 131440824 131440871 -52847791 + AT_rich Low_complexity Low_complexity 1 47 0 335 103 0 17 chr4 131441333 131441391 -52847271 + (CA)n Simple_repeat Simple_repeat 2 58 0 183 204 0 0 chr4 131441421 131441465 -52847197 + (CA)n Simple_repeat Simple_repeat 1 44 0 909 300 7 39 chr4 131441490 131441797 -52846865 + L1M3b LINE L1 1216 1512 -5984 1424 294 23 8 chr4 131441901 131442289 -52846373 + L1M3b LINE L1 1557 1950 -5546 992 333 32 42 chr4 131442382 131443239 -52845423 + L1M3b LINE L1 1781 2412 -5084 978 220 40 28 chr4 131443295 131443622 -52845040 + L1M3b LINE L1 3296 3626 -3939 749 23 0 0 chr4 131443622 131443710 -52844952 + L1PA5 LINE L1 6058 6145 -9 25 0 0 0 chr4 131443717 131443742 -52844920 + AT_rich Low_complexity Low_complexity 1 25 0 181 0 0 65 chr4 131443812 131443843 -52844819 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 10764 226 44 24 chr4 131443847 131446212 -52842450 + L1M3b LINE L1 3628 5944 -1621 2898 144 27 8 chr4 131446212 131446697 -52841965 - LOR1a LTR ERV1 0 497 4 198 0 0 0 chr4 131446704 131446726 -52841936 + (CA)n Simple_repeat Simple_repeat 1 22 0 200 31 62 0 chr4 131446733 131446765 -52841897 + (CAAA)n Simple_repeat Simple_repeat 4 37 0 10764 226 44 24 chr4 131446765 131447238 -52841424 + L1M3b LINE L1 5954 6551 -1014 2490 58 0 3 chr4 131447238 131447548 -52841114 + AluY SINE Alu 1 309 -2 10764 226 44 24 chr4 131447548 131447791 -52840871 + L1M3b LINE L1 6551 6788 -777 24 0 0 0 chr4 131447816 131447840 -52840822 + AT_rich Low_complexity Low_complexity 1 24 0 1943 161 22 34 chr4 131447995 131448075 -52840587 + L1MA6 LINE L1 5887 5966 -334 2348 74 3 0 chr4 131448075 131448371 -52840291 + AluY SINE Alu 1 297 -14 1943 161 22 34 chr4 131448371 131448705 -52839957 + L1MA6 LINE L1 5966 6296 -4 25 83 0 0 chr4 131449084 131449144 -52839518 + AT_rich Low_complexity Low_complexity 1 60 0 205 152 0 0 chr4 131449271 131449304 -52839358 + (TG)n Simple_repeat Simple_repeat 2 34 0 292 254 30 0 chr4 131450930 131450997 -52837665 + MIR3 SINE MIR 108 176 -32 185 320 0 0 chr4 131451111 131451161 -52837501 + MIR SINE MIR 104 153 -109 2271 103 0 0 chr4 131451620 131451922 -52836740 - AluSq SINE Alu -11 302 1 23 54 0 0 chr4 131453296 131453333 -52835329 + AT_rich Low_complexity Low_complexity 1 37 0 1885 146 31 0 chr4 131454085 131454373 -52834289 + AluJb SINE Alu 1 297 -15 24 32 0 0 chr4 131455030 131455061 -52833601 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 131455748 131455769 -52832893 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr4 131456094 131456134 -52832528 + AT_rich Low_complexity Low_complexity 1 40 0 28 79 0 0 chr4 131456177 131456240 -52832422 + AT_rich Low_complexity Low_complexity 1 63 0 208 143 60 0 chr4 131457138 131457222 -52831440 + (TA)n Simple_repeat Simple_repeat 2 90 0 377 288 27 0 chr4 131457532 131457643 -52831019 - MIR SINE MIR -51 211 98 694 205 0 0 chr4 131459540 131459657 -52829005 + AluJb SINE Alu 2 118 -194 357 109 0 0 chr4 131459664 131459719 -52828943 + (CA)n Simple_repeat Simple_repeat 2 56 0 23 54 0 0 chr4 131459719 131459756 -52828906 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr4 131460098 131460127 -52828535 + AT_rich Low_complexity Low_complexity 1 29 0 490 295 67 0 chr4 131460374 131460523 -52828139 + MIR SINE MIR 11 169 -93 2716 214 68 5 chr4 131460653 131461388 -52827274 - L1 LINE L1 -1260 4886 4106 952 154 26 3 chr4 131461370 131461673 -52826989 + L1MA7 LINE L1 5864 6239 -52 * 918 254 93 82 chr4 131461886 131462595 -52826067 - L1ME3A LINE L1 -179 5983 5267 1218 266 60 108 chr4 131463330 131463976 -52824686 + MLT1E2 LTR MaLR 10 626 0 207 0 0 0 chr4 131464543 131464566 -52824096 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1995 112 0 0 chr4 131464587 131464847 -52823815 - AluSq SINE Alu -51 262 3 181 30 91 0 chr4 131465165 131465198 -52823464 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 4815 167 58 5 chr4 131465203 131466340 -52822322 - L1PA16 LINE L1 -9 6157 4966 1909 183 14 40 chr4 131466342 131466768 -52821894 + L1PA16 LINE L1 4541 4955 -1191 279 392 0 14 chr4 131467262 131467410 -52821252 - MLT1I LTR MaLR -208 201 56 1455 218 3 3 chr4 131467532 131467817 -52820845 + AluJo SINE Alu 2 286 -26 1509 299 99 31 chr4 131468120 131469257 -52819405 + HAL1 LINE L1 147 1361 -1146 300 88 15 29 chr4 131469270 131469338 -52819324 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 2203 106 0 3 chr4 131469568 131469871 -52818791 + AluY SINE Alu 1 302 -9 4325 160 58 22 chr4 131469874 131470776 -52817886 + L1MA7 LINE L1 5358 6291 0 23 68 0 0 chr4 131471685 131471729 -52816933 + AT_rich Low_complexity Low_complexity 1 44 0 2202 99 3 3 chr4 131472085 131472377 -52816285 - AluSx SINE Alu -20 292 1 387 0 0 0 chr4 131472457 131472500 -52816162 + (TG)n Simple_repeat Simple_repeat 1 43 0 1389 212 36 4 chr4 131473197 131473471 -52815191 - AluJo SINE Alu -29 283 1 3737 147 10 40 chr4 131473487 131473830 -52814832 - L1MA8 LINE L1 -346 5945 5593 2038 109 32 3 chr4 131473830 131474114 -52814548 - AluSg SINE Alu -18 292 1 3737 147 10 40 chr4 131474114 131474517 -52814145 - L1MA8 LINE L1 -698 5593 5222 268 285 53 66 chr4 131474521 131474672 -52813990 + MIR SINE MIR 94 242 -20 599 216 61 40 chr4 131474739 131474887 -52813775 + MER20 DNA MER1_type 2 152 -67 382 266 55 28 chr4 131475473 131475582 -52813080 + MER20 DNA MER1_type 102 213 -6 730 310 27 16 chr4 131477011 131477269 -52811393 + LTR16A LTR ERVL 177 437 -13 1812 125 50 0 chr4 131477502 131477618 -52811044 + AluSq SINE Alu 1 110 -203 183 42 0 0 chr4 131477618 131477642 -52811020 + (TAA)n Simple_repeat Simple_repeat 1 24 0 1812 125 50 0 chr4 131477642 131477805 -52810857 + AluSq SINE Alu 110 294 -19 198 0 0 0 chr4 131477809 131477831 -52810831 + (TAA)n Simple_repeat Simple_repeat 3 24 0 42 86 0 0 chr4 131478583 131478688 -52809974 + AT_rich Low_complexity Low_complexity 1 105 0 676 270 55 21 chr4 131478736 131479025 -52809637 - L1MC4 LINE L1 -718 7324 7026 821 257 60 41 chr4 131479086 131479747 -52808915 + L1MC4 LINE L1 5993 6618 -1190 237 302 48 63 chr4 131479824 131479950 -52808712 + L1MC4 LINE L1 6721 6844 -1198 352 329 76 21 chr4 131480186 131480423 -52808239 + L2 LINE L2 2525 2774 -540 342 397 75 0 chr4 131480441 131480655 -52808007 + MIR SINE MIR 2 231 -31 2079 186 28 12 chr4 131480673 131481279 -52807383 + MER50 LTR ERV1 1 711 -23 8999 53 102 9 chr4 131481816 131483069 -52805593 - L1P LINE L1 -4567 1579 210 7032 24 0 0 chr4 131483069 131483892 -52804770 + L1PA3 LINE L1 5332 6154 -1 24 32 0 0 chr4 131484658 131484689 -52803973 + AT_rich Low_complexity Low_complexity 1 31 0 200 278 93 19 chr4 131486480 131486588 -52802074 + MIR SINE MIR 147 262 0 205 149 21 21 chr4 131486682 131486729 -52801933 + (TA)n Simple_repeat Simple_repeat 2 48 0 234 91 0 0 chr4 131486736 131486769 -52801893 + (TG)n Simple_repeat Simple_repeat 2 34 0 345 406 15 0 chr4 131487487 131487620 -52801042 + L2 LINE L2 3138 3272 0 21 0 0 0 chr4 131488130 131488151 -52800511 + AT_rich Low_complexity Low_complexity 1 21 0 32 75 0 0 chr4 131488193 131488260 -52800402 + AT_rich Low_complexity Low_complexity 1 67 0 533 364 55 4 chr4 131492507 131492743 -52795919 - MIR SINE MIR 0 262 15 415 224 68 50 chr4 131493667 131493828 -52794834 - LTR50 LTR ERVL -628 167 4 27 29 0 0 chr4 131494471 131494505 -52794157 + AT_rich Low_complexity Low_complexity 1 34 0 311 311 76 15 chr4 131494674 131494806 -52793856 - MIR SINE MIR -16 246 107 31 0 0 0 chr4 131496931 131496962 -52791700 + AT_rich Low_complexity Low_complexity 1 31 0 240 167 0 0 chr4 131497110 131497158 -52791504 + GA-rich Low_complexity Low_complexity 2 49 0 316 353 21 32 chr4 131497406 131497593 -52791069 + MIR SINE MIR 52 236 -26 314 93 37 0 chr4 131497896 131497950 -52790712 + C-rich Low_complexity Low_complexity 2 57 0 1340 218 19 29 chr4 131497950 131498258 -52790404 - AluJo SINE Alu -7 305 1 456 19 0 0 chr4 131498533 131498586 -52790076 + (TG)n Simple_repeat Simple_repeat 2 54 0 358 296 40 8 chr4 131498939 131499064 -52789598 - L2 LINE L2 -560 2754 2626 2184 109 3 3 chr4 131499578 131499881 -52788781 - AluSc SINE Alu -6 303 1 268 192 0 19 chr4 131499906 131499958 -52788704 - L2 LINE L2 0 3313 3263 743 222 36 0 chr4 131499972 131500139 -52788523 + MER2 DNA MER2_type 1 173 -172 34 42 0 0 chr4 131500209 131500257 -52788405 + AT_rich Low_complexity Low_complexity 1 48 0 27 29 0 0 chr4 131500318 131500352 -52788310 + AT_rich Low_complexity Low_complexity 1 34 0 261 163 23 39 chr4 131500620 131500749 -52787913 + (GGGTG)n Simple_repeat Simple_repeat 4 130 0 392 213 0 17 chr4 131500796 131500970 -52787692 + G-rich Low_complexity Low_complexity 1 171 0 225 178 0 0 chr4 131501113 131501158 -52787504 - LTR66 LTR ERVL -172 438 394 2071 139 41 22 chr4 131501336 131501703 -52786959 - L1PB4 LINE L1 -1 6155 5782 459 243 0 0 chr4 131501732 131501884 -52786778 + (TA)n Simple_repeat Simple_repeat 1 152 0 1918 197 15 38 chr4 131501944 131502709 -52785953 - L1PB4 LINE L1 -517 5639 4890 4574 206 36 18 chr4 131502718 131503806 -52784856 + L1PB4 LINE L1 3760 4867 -1279 541 335 94 47 chr4 131503845 131504641 -52784021 - L1M4 LINE L1 -1714 4432 3599 638 266 42 44 chr4 131504718 131505163 -52783499 - PABL_A LTR ERV1 -74 586 1 * 1708 180 6 19 chr4 131505163 131505465 -52783197 - LTR29 LTR ERV1 -30 592 295 1193 218 0 49 chr4 131505492 131505777 -52782885 - AluJo SINE Alu -36 276 6 1574 153 84 7 chr4 131505777 131506064 -52782598 - LTR29 LTR ERV1 -313 309 1 380 259 167 38 chr4 131506526 131506819 -52781843 - MER52A LTR ERV1 -46 748 533 239 238 143 0 chr4 131506877 131506940 -52781722 - MER51A LTR ERV1 -355 279 208 438 179 12 0 chr4 131507139 131507223 -52781439 - MER61E LTR ERV1 -484 85 1 351 316 11 2 chr4 131507407 131507538 -52781124 + L1MC4 LINE L1 7302 7487 -375 254 405 29 24 chr4 131507905 131508115 -52780547 + L3 LINE CR1 1324 1534 -43 22 70 0 0 chr4 131508126 131508169 -52780493 + AT_rich Low_complexity Low_complexity 1 43 0 368 177 0 0 chr4 131508401 131508463 -52780199 + MER92B LTR ERV1 3 64 -572 3378 194 29 16 chr4 131508463 131509157 -52779505 + MER4D LTR ERV1 1 703 -200 4121 192 93 141 chr4 131509160 131510989 -52777673 - MER52A LTR ERV1 -14 1741 1 1218 144 20 5 chr4 131510989 131511190 -52777472 + MER4D LTR ERV1 700 903 0 505 213 22 78 chr4 131511811 131512041 -52776621 + MER31-int LTR ERV1 1055 1271 -3665 1439 250 27 0 chr4 131512136 131512540 -52776122 + L1MB2 LINE L1 3776 4190 -1956 2465 239 50 4 chr4 131512543 131513291 -52775371 + L1MB2 LINE L1 4290 5071 -1075 741 112 83 101 chr4 131513291 131513371 -52775291 + MSTA LTR MaLR 215 295 -133 1834 101 51 27 chr4 131513371 131513702 -52774960 + AluY SINE Alu 1 311 0 741 112 83 101 chr4 131513702 131513790 -52774872 + MSTA LTR MaLR 295 380 -48 3124 227 55 20 chr4 131513792 131514008 -52774654 + L1MB2 LINE L1 5052 5259 -912 180 97 0 0 chr4 131514008 131514039 -52774623 + (CA)n Simple_repeat Simple_repeat 2 32 0 3124 227 55 20 chr4 131514039 131514895 -52773767 + L1MB2 LINE L1 5259 6164 -7 282 246 32 40 chr4 131514933 131515059 -52773603 + MER31-int LTR ERV1 1310 1434 -3502 440 237 39 48 chr4 131515209 131515416 -52773246 + MER31-int LTR ERV1 1686 1890 -3046 27 49 0 0 chr4 131516103 131516144 -52772518 + AT_rich Low_complexity Low_complexity 1 41 0 480 228 18 9 chr4 131516448 131516562 -52772100 + MER31-int LTR ERV1 3173 3287 -1649 699 294 35 66 chr4 131516637 131517090 -52771572 + MER31-int LTR ERV1 3330 3768 -1168 2121 118 7 0 chr4 131517271 131517567 -52771095 + AluSp SINE Alu 1 298 -15 213 294 35 24 chr4 131517810 131517895 -52770767 - MIR SINE MIR -110 152 67 28868 31 1 0 chr4 131518018 131522287 -52766375 + L1PA3 LINE L1 1884 6155 0 192 206 39 88 chr4 131522896 131522998 -52765664 + MIR SINE MIR 110 206 -56 186 103 0 0 chr4 131523494 131523523 -52765139 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 390 303 133 28 chr4 131523919 131524130 -52764532 + MIR SINE MIR 30 262 0 1799 176 3 0 chr4 131524474 131524763 -52763899 - AluJb SINE Alu -22 290 1 21 36 0 0 chr4 131525263 131525291 -52763371 + AT_rich Low_complexity Low_complexity 1 28 0 255 264 85 0 chr4 131525677 131525783 -52762879 - L1M4 LINE L1 -1308 4838 4724 1009 167 0 0 chr4 131525912 131526086 -52762576 + FAM SINE Alu 1 174 -1 25 0 0 0 chr4 131526438 131526463 -52762199 + AT_rich Low_complexity Low_complexity 1 25 0 701 304 0 0 chr4 131527407 131527588 -52761074 + MIR SINE MIR 6 186 -76 255 319 114 53 chr4 131527618 131527699 -52760963 - L2 LINE L2 -541 2773 2698 1875 138 7 24 chr4 131527699 131527996 -52760666 + AluSq SINE Alu 1 292 -21 255 319 114 53 chr4 131527996 131528177 -52760485 - L2 LINE L2 -616 2698 2495 271 322 163 30 chr4 131528653 131528886 -52759776 - L2 LINE L2 -815 2499 2236 1096 218 166 38 chr4 131529077 131529523 -52759139 - MLT1D LTR MaLR -2 503 1 309 294 94 78 chr4 131530129 131530384 -52758278 - MIR SINE MIR -1 261 3 915 72 29 7 chr4 131530920 131531058 -52757604 - L1P4 LINE L1 -713 5461 5321 2639 118 2 5 chr4 131531669 131532077 -52756585 + L1P LINE L1 4911 5317 -829 245 29 29 0 chr4 131534556 131534590 -52754072 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2281 98 0 0 chr4 131536300 131536597 -52752065 + AluSx SINE Alu 4 300 -12 1768 54 0 0 chr4 131538830 131539052 -52749610 - L1PA4 LINE L1 0 6155 5934 23 33 0 0 chr4 131539381 131539411 -52749251 + AT_rich Low_complexity Low_complexity 1 30 0 1372 273 38 8 chr4 131539454 131539854 -52748808 - MLT1C LTR MaLR -3 464 53 36 23 0 0 chr4 131540567 131540610 -52748052 + AT_rich Low_complexity Low_complexity 1 43 0 2024 107 13 3 chr4 131540833 131541131 -52747531 + AluY SINE Alu 1 301 -10 22 0 0 0 chr4 131541516 131541538 -52747124 + AT_rich Low_complexity Low_complexity 1 22 0 389 135 0 27 chr4 131541560 131541634 -52747028 - L1MC2 LINE L1 0 6344 6273 494 366 29 12 chr4 131541730 131541976 -52746686 + MIR SINE MIR 3 252 -10 444 354 84 18 chr4 131541987 131542213 -52746449 + MIR SINE MIR 1 241 -21 24 53 0 0 chr4 131542370 131542408 -52746254 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr4 131543386 131543414 -52745248 + AT_rich Low_complexity Low_complexity 1 28 0 602 257 14 7 chr4 131543928 131544072 -52744590 - LTR40b LTR ERVL 0 462 318 991 222 10 0 chr4 131544074 131544272 -52744390 - MER52A LTR ERV1 0 1755 1556 4481 25 3 0 chr4 131544372 131545171 -52743491 - L1P2 LINE L1 -495 5660 4858 6318 38 0 0 chr4 131545175 131545942 -52742720 + L1P2 LINE L1 4103 4869 -1277 1465 170 11 7 chr4 131545950 131546221 -52742441 + L1M2 LINE L1 5382 5653 -638 2838 199 71 18 chr4 131546249 131546968 -52741694 + L1MA7 LINE L1 5535 6291 0 466 68 27 40 chr4 131546982 131547056 -52741606 - L1PB1 LINE L1 -477 5674 5602 3077 110 0 58 chr4 131547058 131547576 -52741086 + L1PB1 LINE L1 5661 6148 -3 228 233 0 0 chr4 131547617 131547690 -52740972 + (TA)n Simple_repeat Simple_repeat 1 73 0 26 93 0 0 chr4 131548022 131548097 -52740565 + AT_rich Low_complexity Low_complexity 1 75 0 236 305 93 0 chr4 131548130 131548207 -52740455 - L1MC/D LINE L1 -2135 5673 5597 921 74 22 10 chr4 131548207 131548364 -52740298 - L1PA8A LINE L1 -280 5875 5545 1715 116 0 15 chr4 131548364 131548623 -52740039 + L1PA8A LINE L1 5877 6131 0 28 0 0 0 chr4 131548748 131548776 -52739886 + AT_rich Low_complexity Low_complexity 1 28 0 445 195 121 27 chr4 131548810 131548913 -52739749 - L1MA7 LINE L1 -1 6290 6167 1624 200 0 0 chr4 131548913 131549203 -52739459 - AluSx SINE Alu -22 290 1 445 195 121 27 chr4 131549203 131549248 -52739414 - L1MA7 LINE L1 -124 6167 6128 264 253 13 0 chr4 131549240 131549319 -52739343 - L1MA6 LINE L1 -244 6056 5977 * 250 196 0 0 chr4 131549320 131549366 -52739296 + L1MA6 LINE L1 5913 5958 -342 184 341 79 16 chr4 131549397 131549523 -52739139 + MIR SINE MIR 67 200 -62 190 240 21 135 chr4 131551543 131551639 -52737023 + L2 LINE L2 3215 3299 -14 1632 180 71 6 chr4 131551977 131552300 -52736362 + MER2 DNA MER2_type 1 344 0 269 346 45 32 chr4 131552970 131553126 -52735536 + MIR SINE MIR 9 166 -96 2150 109 0 0 chr4 131553152 131553435 -52735227 - AluSq SINE Alu -20 293 11 183 220 0 0 chr4 131553515 131553565 -52735097 + (ATG)n Simple_repeat Simple_repeat 2 51 0 21 0 0 0 chr4 131553593 131553614 -52735048 + AT_rich Low_complexity Low_complexity 1 21 0 1425 175 13 26 chr4 131553638 131553946 -52734716 - L1MC1 LINE L1 -12 6321 6018 35 0 0 0 chr4 131553948 131553983 -52734679 + AT_rich Low_complexity Low_complexity 1 35 0 304 257 50 0 chr4 131553989 131554090 -52734572 - L1MA9 LINE L1 -39 6273 6168 25 31 0 0 chr4 131554195 131554227 -52734435 + AT_rich Low_complexity Low_complexity 1 32 0 1724 193 25 6 chr4 131554846 131555173 -52733489 - MER2 DNA MER2_type 0 345 13 425 287 2 20 chr4 131555360 131555531 -52733131 + L1MEc LINE L1 2314 2457 -3758 2512 167 114 28 chr4 131555563 131556073 -52732589 - MER21A LTR ERV1 0 931 378 1194 198 13 17 chr4 131556082 131556320 -52732342 - MER21A LTR ERV1 -669 262 26 3849 265 89 38 chr4 131556341 131556929 -52731733 + L1MEc LINE L1 3082 3638 -2577 288 0 0 0 chr4 131556929 131556961 -52731701 + (CA)n Simple_repeat Simple_repeat 2 33 0 3849 265 89 38 chr4 131556961 131558380 -52730282 + L1MEc LINE L1 3638 5192 -1023 388 314 95 29 chr4 131558811 131559190 -52729472 + L1MEc LINE L1 5258 5658 -756 3584 238 110 6 chr4 131559195 131560213 -52728449 - L1MC3 LINE L1 -3 7782 6659 247 237 0 0 chr4 131560215 131560274 -52728388 - LTR66 LTR ERVL -158 452 394 188 67 33 0 chr4 131560274 131560304 -52728358 + (TA)n Simple_repeat Simple_repeat 2 32 0 376 173 0 56 chr4 131560318 131560497 -52728165 + (TA)n Simple_repeat Simple_repeat 1 169 0 277 83 0 0 chr4 131560498 131560534 -52728128 - THE1C LTR MaLR -339 36 1 1069 253 101 11 chr4 131562391 131562504 -52726158 + AluJo SINE Alu 1 102 -200 246 32 0 0 chr4 131562504 131562535 -52726127 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 1069 253 101 11 chr4 131562535 131562698 -52725964 + AluJo SINE Alu 102 302 0 21 0 0 0 chr4 131562942 131562963 -52725699 + AT_rich Low_complexity Low_complexity 1 21 0 8813 46 2 1 chr4 131563589 131564659 -52724003 - MER11C LTR ERVK 0 1071 1 25 31 0 0 chr4 131564679 131564711 -52723951 + AT_rich Low_complexity Low_complexity 1 32 0 673 330 83 22 chr4 131564892 131565253 -52723409 + LTR16A LTR ERVL 1 383 -67 1346 203 85 28 chr4 131565273 131565637 -52723025 + MLT1B LTR MaLR 3 387 -3 2405 341 41 8 chr4 131565689 131566733 -52721929 + HERV16 LTR ERVL 2 1080 -3916 248 150 0 0 chr4 131567064 131567104 -52721558 - MLT2C1 LTR ERVL -8 389 350 1456 245 74 3 chr4 131567154 131567508 -52721154 - MLT2D LTR ERVL -42 478 1 256 295 13 13 chr4 131567619 131567697 -52720965 + HERV16 LTR ERVL 1687 1764 -3232 669 250 36 40 chr4 131567733 131567957 -52720705 + HERV16 LTR ERVL 2015 2237 -2759 270 0 0 0 chr4 131568189 131568219 -52720443 + (CA)n Simple_repeat Simple_repeat 2 31 0 786 240 160 4 chr4 131568219 131568444 -52720218 + MLT1C LTR MaLR 206 465 -2 4683 166 50 28 chr4 131568489 131568909 -52719753 + L1MA7 LINE L1 4944 5353 -938 2303 98 0 3 chr4 131568909 131569216 -52719446 + AluY SINE Alu 1 306 -5 4683 166 50 28 chr4 131569216 131570112 -52718550 + L1MA7 LINE L1 5353 6291 0 23 68 0 0 chr4 131571021 131571065 -52717597 + AT_rich Low_complexity Low_complexity 1 44 0 2205 102 3 3 chr4 131571421 131571715 -52716947 - AluSx SINE Alu -18 294 1 279 0 0 0 chr4 131571795 131571826 -52716836 + (TG)n Simple_repeat Simple_repeat 1 31 0 824 248 48 68 chr4 131574183 131574493 -52714169 + MLT2D LTR ERVL 3 306 -108 593 161 0 48 chr4 131574495 131574619 -52714043 + AluSg/x SINE Alu 176 293 -19 26 0 0 0 chr4 131575083 131575109 -52713553 + AT_rich Low_complexity Low_complexity 1 26 0 278 115 19 0 chr4 131577617 131577669 -52710993 + (TA)n Simple_repeat Simple_repeat 2 54 0 1878 141 7 3 chr4 131577669 131577959 -52710703 - AluSx SINE Alu -21 291 1 21 0 0 0 chr4 131577962 131577983 -52710679 + AT_rich Low_complexity Low_complexity 1 21 0 1986 119 11 0 chr4 131578399 131578698 -52709964 + AluSc SINE Alu 1 302 0 216 0 0 0 chr4 131579270 131579294 -52709368 + (T)n Simple_repeat Simple_repeat 1 24 0 27 0 0 0 chr4 131579410 131579437 -52709225 + AT_rich Low_complexity Low_complexity 1 27 0 2099 79 0 4 chr4 131580020 131580297 -52708365 + AluY SINE Alu 1 276 -35 414 0 0 0 chr4 131580305 131580351 -52708311 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 524 297 86 19 chr4 131580439 131580648 -52708014 + MIR SINE MIR 40 262 0 1038 291 76 54 chr4 131581341 131582052 -52706610 - Charlie7 DNA MER1_type -287 2325 1588 1881 115 4 0 chr4 131582052 131582312 -52706350 + AluSx SINE Alu 38 298 -14 1038 291 76 54 chr4 131582312 131582525 -52706137 - Charlie7 DNA MER1_type -1024 1588 1381 592 289 135 64 chr4 131582550 131583320 -52705342 + L2 LINE L2 2445 3252 -61 248 302 0 0 chr4 131583556 131583642 -52705020 - Charlie7 DNA MER1_type -1435 1177 1092 704 241 96 80 chr4 131583642 131584106 -52704556 + MER41B LTR ERV1 98 478 0 519 291 100 51 chr4 131584107 131584817 -52703845 - Charlie7 DNA MER1_type -1517 1095 351 225 256 37 0 chr4 131586182 131586264 -52702398 + (TA)n Simple_repeat Simple_repeat 2 86 0 204 179 0 0 chr4 131586416 131586455 -52702207 + (TA)n Simple_repeat Simple_repeat 1 39 0 1231 265 60 108 chr4 131587123 131587769 -52700893 + MLT1E2 LTR MaLR 10 626 0 207 0 0 0 chr4 131588336 131588359 -52700303 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2008 108 0 0 chr4 131588380 131588640 -52700022 - AluSq SINE Alu -51 262 3 181 30 91 0 chr4 131588958 131588991 -52699671 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 4910 167 50 5 chr4 131588996 131590138 -52698524 - L1PA16 LINE L1 -9 6157 4966 1933 185 14 31 chr4 131590140 131590562 -52698100 + L1PA16 LINE L1 4541 4955 -1191 279 392 0 14 chr4 131591055 131591203 -52697459 - MLT1I LTR MaLR -208 201 56 21 0 0 0 chr4 131591285 131591306 -52697356 + AT_rich Low_complexity Low_complexity 1 21 0 1470 214 3 3 chr4 131591325 131591610 -52697052 + AluJo SINE Alu 2 286 -26 1512 299 99 31 chr4 131591913 131593050 -52695612 + HAL1 LINE L1 147 1361 -1146 278 103 15 29 chr4 131593063 131593131 -52695531 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 2359 84 0 3 chr4 131593361 131593660 -52695002 + AluY SINE Alu 1 298 -13 429 59 0 0 chr4 131593707 131593758 -52694904 + (TA)n Simple_repeat Simple_repeat 2 52 0 28 71 0 0 chr4 131593758 131593814 -52694848 + AT_rich Low_complexity Low_complexity 1 56 0 805 195 35 3 chr4 131593823 131594001 -52694661 - MER61D LTR ERV1 0 752 273 768 241 6 11 chr4 131594489 131594663 -52693999 + FRAM SINE Alu 1 171 -5 641 356 84 34 chr4 131595445 131596363 -52692299 + ERVL LTR ERVL 3096 4059 -1705 24 53 0 0 chr4 131596478 131596516 -52692146 + AT_rich Low_complexity Low_complexity 1 38 0 191 254 16 32 chr4 131596792 131596855 -52691807 - L2 LINE L2 0 3272 3211 247 311 38 9 chr4 131597538 131597644 -52691018 - L2 LINE L2 -1 3312 3204 2619 182 33 17 chr4 131598092 131598669 -52689993 - LTR60 LTR ERV1 0 586 1 205 195 0 0 chr4 131598836 131598877 -52689785 + T-rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chr4 131601132 131601164 -52687498 + AT_rich Low_complexity Low_complexity 1 32 0 4909 162 12 48 chr4 131601182 131601492 -52687170 - L1MA8 LINE L1 -35 6256 5937 1540 206 35 3 chr4 131601492 131601778 -52686884 - AluJo SINE Alu -17 295 1 4909 162 12 48 chr4 131601778 131602136 -52686526 - L1MA8 LINE L1 -354 5937 5638 2038 109 32 3 chr4 131602136 131602420 -52686242 - AluSg SINE Alu -18 292 1 4909 162 12 48 chr4 131602420 131602823 -52685839 - L1MA8 LINE L1 -653 5638 5222 268 285 53 66 chr4 131602827 131602978 -52685684 + MIR SINE MIR 94 242 -20 599 216 61 40 chr4 131603045 131603193 -52685469 + MER20 DNA MER1_type 2 152 -67 382 266 55 28 chr4 131604019 131604128 -52684534 + MER20 DNA MER1_type 102 213 -6 730 310 27 16 chr4 131605557 131605815 -52682847 + LTR16A LTR ERVL 177 437 -13 1812 125 50 0 chr4 131606048 131606164 -52682498 + AluSq SINE Alu 1 110 -203 183 42 0 0 chr4 131606164 131606188 -52682474 + (TAA)n Simple_repeat Simple_repeat 1 24 0 1812 125 50 0 chr4 131606188 131606351 -52682311 + AluSq SINE Alu 110 294 -19 198 0 0 0 chr4 131606355 131606377 -52682285 + (TAA)n Simple_repeat Simple_repeat 3 24 0 42 86 0 0 chr4 131607129 131607234 -52681428 + AT_rich Low_complexity Low_complexity 1 105 0 676 270 55 21 chr4 131607282 131607571 -52681091 - L1MC4 LINE L1 -718 7324 7026 823 248 54 90 chr4 131607632 131608496 -52680166 + L1MC4 LINE L1 5993 6618 -1190 352 329 76 21 chr4 131608732 131608969 -52679693 + L2 LINE L2 2525 2774 -540 342 397 75 0 chr4 131608987 131609201 -52679461 + MIR SINE MIR 2 231 -31 2079 186 28 12 chr4 131609219 131609825 -52678837 + MER50 LTR ERV1 1 711 -23 9017 53 102 9 chr4 131610362 131611615 -52677047 - L1P LINE L1 -4567 1579 210 7032 24 0 0 chr4 131611615 131612438 -52676224 + L1PA3 LINE L1 5332 6154 -1 24 32 0 0 chr4 131613204 131613235 -52675427 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 131613568 131613589 -52675073 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chr4 131613694 131613725 -52674937 + AT_rich Low_complexity Low_complexity 1 31 0 2150 105 13 0 chr4 131615323 131615627 -52673035 + AluY SINE Alu 1 308 -3 928 210 6 6 chr4 131616459 131616640 -52672022 - AluJo SINE Alu -9 303 123 386 206 35 6 chr4 131616640 131616810 -52671852 + (TA)n Simple_repeat Simple_repeat 1 175 0 250 250 79 0 chr4 131616810 131616886 -52671776 + L1MC4 LINE L1 6611 6692 -1350 23 68 0 0 chr4 131616886 131616930 -52671732 + AT_rich Low_complexity Low_complexity 1 44 0 569 204 0 0 chr4 131617405 131617508 -52671154 - L1MC1 LINE L1 -8 6325 6223 26 50 0 0 chr4 131617758 131617798 -52670864 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr4 131618167 131618189 -52670473 + AT_rich Low_complexity Low_complexity 1 22 0 6503 80 10 26 chr4 131618190 131619706 -52668956 - L1PA7 LINE L1 -12 6142 4637 21797 111 6 13 chr4 131619806 131623579 -52665083 - L1P3 LINE L1 -433 5721 1985 3574 231 17 35 chr4 131623567 131623583 -52665079 - L1 LINE L1 -861 5285 5270 * 2009 126 0 23 chr4 131623583 131623884 -52664778 - AluSc SINE Alu -15 294 1 3574 231 17 35 chr4 131623884 131624946 -52663716 - L1 LINE L1 -876 5270 4227 2107 194 26 2 chr4 131624948 131625376 -52663286 + L1 LINE L1 3760 4197 -1949 582 279 90 69 chr4 131625381 131626005 -52662657 + L1MC4 LINE L1 6448 7084 -958 1944 148 0 7 chr4 131626039 131626330 -52662332 - AluSx SINE Alu -21 291 3 542 297 46 21 chr4 131626348 131626675 -52661987 + L1MC4 LINE L1 7338 7672 -370 233 268 0 28 chr4 131627035 131627106 -52661556 + (CATATA)n Simple_repeat Simple_repeat 3 71 0 1170 268 80 51 chr4 131627211 131628053 -52660609 + L1MC5 LINE L1 6742 7607 -354 2598 247 124 18 chr4 131628148 131629292 -52659370 + L1M4 LINE L1 2553 3817 -2329 632 267 35 35 chr4 131629339 131629654 -52659008 + L1MC5 LINE L1 7601 7915 -46 27 0 0 0 chr4 131629929 131629956 -52658706 + AT_rich Low_complexity Low_complexity 1 27 0 384 22 0 0 chr4 131631183 131631228 -52657434 + (TG)n Simple_repeat Simple_repeat 2 46 0 26 30 0 0 chr4 131632995 131633028 -52655634 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr4 131633206 131633234 -52655428 + AT_rich Low_complexity Low_complexity 1 28 0 1040 168 0 0 chr4 131633706 131633867 -52654795 + AluSx SINE Alu 1 161 -151 285 29 0 0 chr4 131634739 131634773 -52653889 + (CA)n Simple_repeat Simple_repeat 1 34 0 185 311 48 19 chr4 131635755 131635858 -52652804 - L3 LINE CR1 -239 1338 1233 184 351 54 14 chr4 131636153 131636227 -52652435 - L2 LINE L2 -2 3270 3194 3736 183 91 1 chr4 131636889 131637645 -52651017 + LTR1B LTR ERV1 1 824 -2 29 47 0 0 chr4 131637832 131637875 -52650787 + AT_rich Low_complexity Low_complexity 1 43 0 467 236 83 67 chr4 131638789 131639150 -52649512 + L1ME LINE L1 508 874 -5196 1331 235 103 32 chr4 131639718 131640207 -52648455 + MER51C LTR ERV1 1 640 0 652 299 101 48 chr4 131640305 131640740 -52647922 - LTR38 LTR ERV1 -11 545 88 1557 171 7 40 chr4 131640867 131641166 -52647496 - AluJb SINE Alu -13 299 11 1833 248 52 24 chr4 131641388 131642026 -52646636 - LTR68 LTR ERV1 -2 738 19 985 158 6 12 chr4 131642027 131642192 -52646470 - MSTB1 LTR MaLR 0 432 269 2429 191 30 6 chr4 131642192 131642695 -52645967 - L1 LINE L1 -1071 5075 4561 1495 184 184 11 chr4 131642695 131643060 -52645602 + MSTA LTR MaLR 1 428 0 312 27 0 0 chr4 131643660 131643697 -52644965 + (TG)n Simple_repeat Simple_repeat 2 38 0 25 0 0 0 chr4 131644408 131644433 -52644229 + AT_rich Low_complexity Low_complexity 1 25 0 2150 98 0 19 chr4 131644446 131644761 -52643901 - AluSc SINE Alu 0 309 1 4071 71 0 54 chr4 131644788 131644862 -52643800 - L1PA7 LINE L1 0 6154 6078 2255 84 3 0 chr4 131644862 131645161 -52643501 - AluY SINE Alu -11 300 1 4071 71 0 54 chr4 131645161 131645693 -52642969 - L1PA7 LINE L1 -76 6078 5581 341 338 7 22 chr4 131646409 131646548 -52642114 - Charlie7 DNA MER1_type -2356 256 120 225 314 141 0 chr4 131647139 131647260 -52641402 + MIR SINE MIR 124 261 -1 886 258 148 0 chr4 131647354 131647598 -52641064 + MER119 DNA MER1_type 51 330 -253 546 197 14 82 chr4 131647621 131647768 -52640894 + MER119 DNA MER1_type 447 583 0 343 311 59 10 chr4 131647980 131648171 -52640491 + L1MC4a LINE L1 5672 5877 -307 1625 196 21 3 chr4 131648266 131648593 -52640069 - L1MC1 LINE L1 -15 6318 5986 423 239 6 83 chr4 131649204 131649384 -52639278 - Charlie7 DNA MER1_type -2382 230 65 1866 196 70 18 chr4 131650278 131650722 -52637940 - MLT1C LTR MaLR 0 467 1 561 320 70 12 chr4 131651189 131651433 -52637229 - MIR SINE MIR -4 258 1 925 106 7 0 chr4 131652763 131652905 -52635757 + L1PA14 LINE L1 6017 6159 -2 3426 171 45 3 chr4 131653023 131653666 -52634996 - L1PA16 LINE L1 0 6166 5497 944 227 10 0 chr4 131653683 131653890 -52634772 + L1P LINE L1 5074 5282 -864 1180 193 53 164 chr4 131654431 131654938 -52633724 - MLT2D LTR ERVL -6 458 8 254 204 0 37 chr4 131656149 131656257 -52632405 + (TA)n Simple_repeat Simple_repeat 1 104 0 2243 107 7 3 chr4 131660423 131660733 -52627929 + AluSq SINE Alu 1 311 -2 201 121 0 0 chr4 131661476 131661509 -52627153 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2000 254 28 35 chr4 131661952 131662625 -52626037 + LTR68 LTR ERV1 1 735 -5 253 116 0 0 chr4 131663353 131663396 -52625266 + L1MA3 LINE L1 6263 6305 0 1463 194 31 59 chr4 131663454 131663926 -52624736 + MER89 LTR ERV1 3 559 0 230 286 95 36 chr4 131664469 131664553 -52624109 - L3b LINE CR1 -121 1462 1374 184 170 38 0 chr4 131664921 131664974 -52623688 + (TA)n Simple_repeat Simple_repeat 1 55 0 220 271 14 14 chr4 131665296 131665366 -52623296 + MIR SINE MIR 193 262 0 356 257 70 55 chr4 131666990 131667333 -52621329 + L1M4 LINE L1 1210 1557 -4985 1183 258 128 19 chr4 131667373 131667912 -52620750 + L1MD2 LINE L1 5369 5966 -393 * 1366 263 36 18 chr4 131667609 131668115 -52620547 + L1MB8 LINE L1 5663 6177 -1 2789 10 0 0 chr4 131668641 131668951 -52619711 - AluY SINE Alu -1 310 1 279 0 0 0 chr4 131669633 131669664 -52618998 + (TTAA)n Simple_repeat Simple_repeat 2 32 0 469 314 69 5 chr4 131671361 131671549 -52617113 - MLT1J2 LTR MaLR -227 223 24 31 26 0 0 chr4 131671609 131671647 -52617015 + AT_rich Low_complexity Low_complexity 1 38 0 1379 103 0 76 chr4 131672409 131672633 -52616029 + MER30 DNA MER1_type 1 207 -23 22 35 0 0 chr4 131672706 131672735 -52615927 + AT_rich Low_complexity Low_complexity 1 29 0 30 0 0 0 chr4 131672910 131672940 -52615722 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 131673172 131673194 -52615468 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 131673510 131673532 -52615130 + AT_rich Low_complexity Low_complexity 1 22 0 837 268 5 5 chr4 131674294 131674488 -52614174 + MER58A DNA MER1_type 31 224 0 235 223 0 43 chr4 131674800 131674894 -52613768 + (TA)n Simple_repeat Simple_repeat 2 91 0 441 0 0 0 chr4 131674953 131675002 -52613660 + (TATG)n Simple_repeat Simple_repeat 4 52 0 2322 211 11 2 chr4 131675020 131675466 -52613196 - L1M3f LINE L1 -4873 455 6 26 93 0 0 chr4 131676515 131676590 -52612072 + AT_rich Low_complexity Low_complexity 1 75 0 768 122 0 0 chr4 131676795 131676902 -52611760 + U6 snRNA snRNA 1 107 0 5847 150 19 10 chr4 131676902 131678712 -52609950 + L1PA10 LINE L1 4337 6158 -10 225 94 47 47 chr4 131679037 131679101 -52609561 + (TA)n Simple_repeat Simple_repeat 2 65 0 182 75 45 60 chr4 131679179 131679246 -52609416 + (TA)n Simple_repeat Simple_repeat 2 67 0 341 83 0 118 chr4 131679271 131679475 -52609187 + (TA)n Simple_repeat Simple_repeat 1 180 0 415 159 49 26 chr4 131679671 131679979 -52608683 + (TA)n Simple_repeat Simple_repeat 1 315 0 21 57 0 0 chr4 131680186 131680221 -52608441 + AT_rich Low_complexity Low_complexity 1 35 0 300 259 24 0 chr4 131681256 131681341 -52607321 + MER94 DNA DNA 3 89 -45 739 282 100 69 chr4 131682042 131682337 -52606325 - L1ME3A LINE L1 -28 6142 5858 1832 219 26 18 chr4 131682337 131682793 -52605869 + MER74C LTR ERVL 1 460 0 739 282 100 69 chr4 131682793 131684272 -52604390 - L1ME3A LINE L1 -312 5858 4223 1653 185 77 0 chr4 131684272 131684612 -52604050 + MER47A DNA MER2_type 1 366 0 739 282 100 69 chr4 131684612 131685296 -52603366 - L1ME3A LINE L1 -1947 4223 3562 349 250 83 30 chr4 131685520 131685688 -52602974 - L1ME3A LINE L1 -2840 3306 3130 865 217 107 79 chr4 131686264 131686619 -52602043 + MLT1A1 LTR MaLR 1 365 0 23 33 0 0 chr4 131687148 131687178 -52601484 + AT_rich Low_complexity Low_complexity 1 30 0 291 71 0 0 chr4 131687431 131687473 -52601189 + (TG)n Simple_repeat Simple_repeat 2 43 0 247 319 0 11 chr4 131687476 131687567 -52601095 - L1MC4 LINE L1 -1343 6699 6610 * 251 236 45 45 chr4 131687489 131687578 -52601084 + L1MC4 LINE L1 6615 6703 -1339 244 261 22 0 chr4 131687601 131687693 -52600969 + (CATATA)n Simple_repeat Simple_repeat 2 95 0 231 309 74 60 chr4 131688767 131688916 -52599746 + MIR3 SINE MIR 2 152 -56 1272 309 73 40 chr4 131689018 131689700 -52598962 - MER21B LTR ERV1 -129 734 30 364 328 111 34 chr4 131689792 131690344 -52598318 - L1M4 LINE L1 -2677 4120 3527 14958 150 26 33 chr4 131690403 131693814 -52594848 - HUERS-P1 LTR ERV1 -1699 4564 1130 207 0 0 0 chr4 131693814 131693837 -52594825 + (GA)n Simple_repeat Simple_repeat 2 24 0 14958 150 26 33 chr4 131693837 131694251 -52594411 - HUERS-P1 LTR ERV1 -5133 1130 816 210 37 0 0 chr4 131694251 131694278 -52594384 + (G)n Simple_repeat Simple_repeat 1 27 0 14958 150 26 33 chr4 131694278 131694768 -52593894 - HUERS-P1 LTR ERV1 -5447 816 324 3648 114 49 39 chr4 131694931 131695545 -52593117 - HUERS-P1 LTR ERV1 -5626 637 18 941 159 14 0 chr4 131695552 131695697 -52592965 - LTR8 LTR ERV1 0 691 545 4191 231 34 25 chr4 131695705 131696558 -52592104 - L1PA13 LINE L1 -3782 3015 2171 2197 133 0 0 chr4 131696558 131696859 -52591803 + AluSx SINE Alu 1 301 -11 4191 231 34 25 chr4 131696859 131697713 -52590949 - L1PA13 LINE L1 -4626 2171 1280 2353 302 11 23 chr4 131697703 131698432 -52590230 - L1PA13 LINE L1 -6066 721 2 * 499 259 83 28 chr4 131699260 131699476 -52589186 - L1MEd LINE L1 -4997 1122 895 22 0 0 0 chr4 131699556 131699578 -52589084 + AT_rich Low_complexity Low_complexity 1 22 0 44 46 0 0 chr4 131699656 131699721 -52588941 + AT_rich Low_complexity Low_complexity 1 65 0 346 223 42 24 chr4 131700063 131700229 -52588433 + (TA)n Simple_repeat Simple_repeat 2 170 0 29 47 0 0 chr4 131701015 131701058 -52587604 + AT_rich Low_complexity Low_complexity 1 43 0 2093 121 24 0 chr4 131701208 131701505 -52587157 - AluSp SINE Alu -6 307 4 1976 188 33 32 chr4 131701803 131702353 -52586309 + MLT2A2 LTR ERVL 1 554 0 594 13 53 0 chr4 131703873 131703948 -52584714 + L1PA6 LINE L1 6074 6152 -2 21 71 0 0 chr4 131705247 131705289 -52583373 + AT_rich Low_complexity Low_complexity 1 42 0 1848 301 116 57 chr4 131705750 131707663 -52580999 + L1MA8 LINE L1 7 2022 -5187 1794 210 27 4 chr4 131707684 131708161 -52580501 + L1MA8 LINE L1 2128 2615 -4594 312 200 89 44 chr4 131708261 131708351 -52580311 + L1MA8 LINE L1 3952 4045 -3163 3510 188 16 6 chr4 131758353 131759378 -52529284 + L1MA8 LINE L1 5676 6713 -640 1591 159 48 39 chr4 131759378 131759687 -52528975 + THE1B LTR MaLR 1 312 -52 10657 117 14 1 chr4 131760052 131761612 -52527050 + THE1B-int LTR MaLR 2 1580 0 1857 181 30 30 chr4 131761612 131761976 -52526686 + THE1B LTR MaLR 1 364 0 2120 211 56 35 chr4 131761976 131762605 -52526057 + L1MA8 LINE L1 6709 7350 -3 18702 37 1 8 chr4 131763385 131765752 -52522910 - L1P LINE L1 -1155 4991 2641 12408 48 0 0 chr4 131765753 131767315 -52521347 + L1P LINE L1 1078 2639 -3507 21 0 0 0 chr4 131767374 131767395 -52521267 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 131767728 131767752 -52520910 + AT_rich Low_complexity Low_complexity 1 24 0 3423 117 23 5 chr4 131767767 131768332 -52520330 - L1PA13 LINE L1 0 6163 5589 346 235 15 37 chr4 131768351 131768487 -52520175 - L1PA13 LINE L1 -548 5615 5483 290 301 23 30 chr4 131769266 131769399 -52519263 + HERV16 LTR ERVL 2699 2830 -2166 23 0 0 0 chr4 131770562 131770585 -52518077 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 131771445 131771466 -52517196 + AT_rich Low_complexity Low_complexity 1 21 0 304 274 57 75 chr4 131772036 131772248 -52516414 - L1MEc LINE L1 -5230 1166 959 237 297 0 0 chr4 131773169 131773233 -52515429 + MLT1I LTR MaLR 318 381 -28 27 29 0 0 chr4 131773318 131773352 -52515310 + AT_rich Low_complexity Low_complexity 1 34 0 181 370 62 0 chr4 131773532 131773613 -52515049 - MIR SINE MIR -121 141 56 22 0 0 0 chr4 131774309 131774331 -52514331 + AT_rich Low_complexity Low_complexity 1 22 0 243 394 35 7 chr4 131774436 131774578 -52514084 - MIR SINE MIR -50 212 67 23 33 0 0 chr4 131774912 131774942 -52513720 + AT_rich Low_complexity Low_complexity 1 30 0 283 190 76 0 chr4 131775232 131775311 -52513351 + MER61E LTR ERV1 1 85 -484 462 254 50 38 chr4 131775516 131775867 -52512795 + MER61D LTR ERV1 351 1232 -28 325 296 17 52 chr4 131776020 131776135 -52512527 - L2 LINE L2 -5 3267 3157 315 373 35 0 chr4 131776191 131776360 -52512302 - MIR SINE MIR -52 210 36 30 45 0 0 chr4 131778474 131778518 -52510144 + AT_rich Low_complexity Low_complexity 1 44 0 23 68 0 0 chr4 131778728 131778772 -52509890 + AT_rich Low_complexity Low_complexity 1 44 0 2191 121 7 0 chr4 131779296 131779602 -52509060 + AluSg1 SINE Alu 1 308 -1 1448 134 40 40 chr4 131780826 131781103 -52507559 + THE1C LTR MaLR 99 375 0 1648 146 0 21 chr4 131781277 131781558 -52507104 - Tigger3(Golem) DNA MER2_type 0 3029 2755 1613 146 0 4 chr4 131781558 131781798 -52506864 + AluSx SINE Alu 1 239 -73 302 280 184 60 chr4 131781917 131782199 -52506463 - MLT1J LTR MaLR -42 469 153 26 0 0 0 chr4 131782366 131782392 -52506270 + AT_rich Low_complexity Low_complexity 1 26 0 258 291 48 19 chr4 131782435 131782538 -52506124 - LTR50 LTR ERVL -155 640 535 354 118 26 13 chr4 131783004 131783080 -52505582 + (TAGA)n Simple_repeat Simple_repeat 1 77 0 831 332 36 36 chr4 131783083 131783607 -52505055 - ERVL LTR ERVL -355 5409 4886 884 354 52 25 chr4 131783671 131784264 -52504398 - ERVL LTR ERVL -2409 3355 2747 882 364 39 6 chr4 131784437 131784920 -52503742 - ERVL LTR ERVL -3265 2499 2001 345 281 77 52 chr4 131785041 131785240 -52503422 - LTR50 LTR ERVL -329 194 18 26 0 0 0 chr4 131785329 131785355 -52503307 + AT_rich Low_complexity Low_complexity 1 26 0 613 363 47 9 chr4 131785483 131785827 -52502835 - MLT1H LTR MaLR -133 416 60 804 263 101 14 chr4 131785836 131786279 -52502383 + MLT1F1 LTR MaLR 1 567 0 337 314 164 34 chr4 131787084 131787377 -52501285 + L1MC/D LINE L1 5347 5677 -2131 2173 212 78 11 chr4 131789536 131790074 -52498588 - LTR48 LTR ERV1 -2 785 212 713 181 175 17 chr4 131790244 131790421 -52498241 - LTR48 LTR ERV1 -581 206 2 1157 196 9 9 chr4 131790976 131791205 -52497457 - MER57A LTR ERV1 0 403 175 11760 226 24 20 chr4 131791305 131795388 -52493274 - L1PA12 LINE L1 -2612 4972 48 2113 130 0 0 chr4 131796892 131797200 -52491462 + AluSx SINE Alu 1 308 -4 2375 68 10 0 chr4 131797323 131797619 -52491043 - AluY SINE Alu -12 299 1 675 240 40 11 chr4 131798346 131798521 -52490141 + MIR SINE MIR 31 210 -52 1294 184 27 92 chr4 131798521 131798677 -52489985 + MLT1A1 LTR MaLR 1 166 -199 2149 118 0 0 chr4 131798677 131798966 -52489696 - AluSx SINE Alu -23 289 1 1294 184 27 92 chr4 131798966 131799179 -52489483 + MLT1A1 LTR MaLR 166 346 -19 209 338 15 0 chr4 131799663 131799731 -52488931 - L2 LINE L2 0 3272 3204 22 0 0 0 chr4 131801166 131801188 -52487474 + AT_rich Low_complexity Low_complexity 1 22 0 240 184 0 0 chr4 131801685 131801734 -52486928 + (TG)n Simple_repeat Simple_repeat 2 50 0 716 176 42 7 chr4 131802496 131802638 -52486024 - MER57A LTR ERV1 -256 147 1 24 0 0 0 chr4 131802661 131802685 -52485977 + AT_rich Low_complexity Low_complexity 1 24 0 2309 97 0 0 chr4 131802765 131803073 -52485589 - AluY SINE Alu -3 308 1 204 40 0 0 chr4 131803076 131803101 -52485561 + (TTTTTA)n Simple_repeat Simple_repeat 4 28 0 27 49 0 0 chr4 131803280 131803321 -52485341 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chr4 131804381 131804405 -52484257 + AT_rich Low_complexity Low_complexity 1 24 0 330 325 18 0 chr4 131805062 131805176 -52483486 - MER5B DNA MER1_type -62 116 1 198 329 35 12 chr4 131805248 131805333 -52483329 + MIR SINE MIR 99 185 -77 261 250 33 0 chr4 131806270 131806330 -52482332 - MER5A DNA MER1_type -84 105 44 41668 40 24 2 chr4 131806333 131812346 -52476316 + L1PA3 LINE L1 7 6151 -4 2121 106 3 17 chr4 131813131 131813423 -52475239 + AluSg SINE Alu 3 290 -20 28 0 0 0 chr4 131813480 131813508 -52475154 + AT_rich Low_complexity Low_complexity 1 28 0 4788 33 0 3 chr4 131813816 131814387 -52474275 + L1PA3 LINE L1 5587 6155 0 23 54 0 0 chr4 131814701 131814738 -52473924 + AT_rich Low_complexity Low_complexity 1 37 0 758 168 21 17 chr4 131815145 131815668 -52472994 + GA-rich Low_complexity Low_complexity 1 525 0 194 331 151 6 chr4 131815901 131816067 -52472595 + L2 LINE L2 133 322 -2992 1966 227 58 37 chr4 131816486 131816763 -52471899 + MER90 LTR ERV1 1 271 -343 1377 206 39 18 chr4 131816763 131817045 -52471617 - AluJb SINE Alu -24 288 1 1966 227 58 37 chr4 131817045 131817365 -52471297 + MER90 LTR ERV1 271 611 -3 446 341 84 60 chr4 131817373 131818029 -52470633 + L2 LINE L2 727 1398 -1916 1136 216 83 46 chr4 131818063 131818387 -52470275 + MLT1A1 LTR MaLR 18 353 -12 628 336 92 19 chr4 131818398 131818812 -52469850 + L2 LINE L2 1394 1837 -1477 297 295 58 13 chr4 131818861 131819017 -52469645 - MER104 DNA Tc2 -3 177 15 306 247 21 21 chr4 131819087 131819184 -52469478 + LTR52 LTR ERVL 3 99 -322 1344 281 114 27 chr4 131819237 131819754 -52468908 + REP3 LTR ERV 1 562 0 2008 203 39 43 chr4 131819856 131820368 -52468294 - LTR54 LTR ERV1 0 510 1 372 183 56 0 chr4 131820525 131820596 -52468066 + AluJ/FRAM SINE Alu 222 296 -6 27 49 0 0 chr4 131820788 131820829 -52467833 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr4 131821240 131821262 -52467400 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 131821364 131821385 -52467277 + AT_rich Low_complexity Low_complexity 1 21 0 387 349 55 16 chr4 131821724 131821979 -52466683 + LTR16C LTR ERVL 227 491 0 277 289 16 23 chr4 131822167 131822295 -52466367 + (TA)n Simple_repeat Simple_repeat 2 128 0 1453 135 12 100 chr4 131822323 131822664 -52465998 + L1MA10 LINE L1 6024 6334 0 318 132 26 40 chr4 131822765 131822841 -52465821 - L1MC2 LINE L1 -10 6334 6260 2633 209 3 23 chr4 131822841 131823414 -52465248 - L1MC2 LINE L1 -455 5889 5328 6028 96 29 2 chr4 131823422 131824149 -52464513 - L1PA11 LINE L1 -4 6170 5464 1619 163 50 71 chr4 131824149 131824530 -52464132 - THE1C LTR MaLR 0 375 3 6028 96 29 2 chr4 131824530 131825399 -52463263 - L1PA11 LINE L1 -710 5464 4560 4816 159 19 22 chr4 131825432 131825462 -52463200 - L1PA11 LINE L1 -1583 4563 4534 4082 33 2 4 chr4 131825462 131825953 -52462709 + L1PA5 LINE L1 5665 6154 0 4816 159 19 22 chr4 131825953 131826822 -52461840 - L1PA11 LINE L1 -1612 4534 3667 4080 229 53 34 chr4 131826963 131827941 -52460721 + L1MC2 LINE L1 4252 5210 -1134 1466 163 259 14 chr4 131827941 131828285 -52460377 - MSTA LTR MaLR 0 428 1 4080 229 53 34 chr4 131828285 131829332 -52459330 + L1MC2 LINE L1 5210 6319 -25 3015 246 113 34 chr4 131829352 131830590 -52458072 + L1MD3 LINE L1 5720 7055 -940 2367 77 0 16 chr4 131831908 131832220 -52456442 + AluY SINE Alu 1 307 -4 23 110 0 0 chr4 131832483 131832583 -52456079 + AT_rich Low_complexity Low_complexity 1 100 0 984 234 76 62 chr4 131834432 131834864 -52453798 + L1MC4a LINE L1 7074 7511 -297 903 208 37 9 chr4 131834918 131835134 -52453528 - AluJb SINE Alu -9 303 82 411 192 96 0 chr4 131835157 131835261 -52453401 + L1MD3 LINE L1 7874 7987 -8 902 175 39 0 chr4 131835446 131835600 -52453062 + AluJb SINE Alu 137 296 -16 245 109 22 0 chr4 131836458 131836504 -52452158 + (CA)n Simple_repeat Simple_repeat 2 48 0 280 329 48 39 chr4 131837983 131838190 -52450472 - L2 LINE L2 -256 3057 2849 224 212 94 59 chr4 131838334 131838419 -52450243 - MIR SINE MIR -74 188 101 2034 136 3 0 chr4 131838498 131838792 -52449870 - AluSg SINE Alu -15 295 1 310 365 41 50 chr4 131839099 131839517 -52449145 + L2 LINE L2 2653 3072 -200 187 306 0 32 chr4 131839662 131839724 -52448938 + L2 LINE L2 3204 3263 -50 267 337 23 0 chr4 131840747 131840833 -52447829 + L2 LINE L2 2975 3062 -251 425 258 86 25 chr4 131841251 131841414 -52447248 - MLT1J1 LTR MaLR -11 435 263 558 295 18 6 chr4 131841478 131841644 -52447018 - MLT1J2 LTR MaLR -282 168 1 21 57 0 0 chr4 131842096 131842131 -52446531 + AT_rich Low_complexity Low_complexity 1 35 0 2070 113 10 0 chr4 131842703 131842996 -52445666 + AluSx SINE Alu 1 296 -16 2306 121 59 0 chr4 131843771 131844127 -52444535 + MER51B LTR ERV1 1 377 0 363 326 58 13 chr4 131844500 131844513 -52444149 - L1M4 LINE L1 -2299 3847 3836 770 169 20 0 chr4 131844513 131844661 -52444001 - L1MA6 LINE L1 -9 6291 6141 363 326 58 13 chr4 131844661 131844871 -52443791 - L1M4 LINE L1 -2310 3836 3614 255 242 0 16 chr4 131845280 131845342 -52443320 + (TATATG)n Simple_repeat Simple_repeat 3 63 0 25 31 0 0 chr4 131845371 131845403 -52443259 + AT_rich Low_complexity Low_complexity 1 32 0 218 191 44 0 chr4 131845412 131845480 -52443182 + (TA)n Simple_repeat Simple_repeat 2 72 0 401 308 71 23 chr4 131845480 131845746 -52442916 - L1M4 LINE L1 -2887 3259 2981 303 294 0 0 chr4 131845813 131845898 -52442764 - L1MC4 LINE L1 -1339 6703 6619 494 190 116 67 chr4 131846221 131846548 -52442114 + pTR5 LTR ERV1 742 1084 -1354 3606 124 78 49 chr4 131846582 131847251 -52441411 + LTR12 LTR ERV1 1 688 0 881 51 85 0 chr4 131847251 131847369 -52441293 + LTR12 LTR ERV1 582 709 -5 245 321 153 32 chr4 131847683 131847873 -52440789 - MLT1I LTR MaLR -123 286 74 23 33 0 0 chr4 131849114 131849144 -52439518 + AT_rich Low_complexity Low_complexity 1 30 0 270 0 0 0 chr4 131849144 131849174 -52439488 + (TG)n Simple_repeat Simple_repeat 1 30 0 233 267 60 17 chr4 131849389 131849505 -52439157 - L1MEd LINE L1 -5298 821 701 210 192 0 0 chr4 131850379 131850431 -52438231 + (TA)n Simple_repeat Simple_repeat 2 53 0 547 297 90 78 chr4 131850635 131851369 -52437293 + LTR41 LTR ERVL 11 753 -20 546 312 64 61 chr4 131851482 131851809 -52436853 + L1MEc LINE L1 57 384 -6012 301 291 0 12 chr4 131851823 131851909 -52436753 + CT-rich Low_complexity Low_complexity 3 87 0 519 221 120 44 chr4 131851910 131852202 -52436460 - L1 LINE L1 -1198 4948 4629 308 232 61 0 chr4 131852210 131852292 -52436370 - MER76 LTR ERV -42 646 560 5718 117 21 0 chr4 131852327 131853681 -52434981 - L1PA14 LINE L1 0 6161 4784 1647 243 31 55 chr4 131853723 131854270 -52434392 - MER76 LTR ERV -154 534 1 1056 169 47 14 chr4 131854536 131854749 -52433913 + THE1A LTR MaLR 1 220 -135 659 125 0 10 chr4 131854950 131855046 -52433616 + THE1A LTR MaLR 270 364 0 3144 237 45 45 chr4 131855051 131855610 -52433052 - HERVL68 LTR ERVL -193 2844 2283 324 48 0 0 chr4 131855610 131855652 -52433010 + (TG)n Simple_repeat Simple_repeat 2 43 0 3144 237 45 45 chr4 131855652 131856022 -52432640 - HERVL68 LTR ERVL -753 2284 1915 797 222 114 0 chr4 131856676 131856843 -52431819 + MSTB LTR MaLR 1 186 -240 2085 61 0 47 chr4 131856949 131857228 -52431434 - AluY SINE Alu -45 266 1 1088 283 14 0 chr4 131857582 131857936 -52430726 - L1MEc LINE L1 -5552 844 486 1537 260 33 61 chr4 131858076 131858310 -52430352 + L1ME2 LINE L1 4993 5232 -932 2112 113 0 14 chr4 131858310 131858602 -52430060 + AluSc SINE Alu 1 288 -21 1537 260 33 61 chr4 131858602 131859394 -52429268 + L1ME2 LINE L1 5232 5985 -179 2613 156 38 47 chr4 131859534 131860093 -52428569 - L1PB4 LINE L1 -2 6154 5601 2451 37 0 0 chr4 131860093 131860380 -52428282 - L1PA5 LINE L1 0 6154 5861 21 57 0 0 chr4 131861636 131861671 -52426991 + AT_rich Low_complexity Low_complexity 1 35 0 2781 112 36 27 chr4 131861883 131862331 -52426331 + MER4D LTR ERV1 452 903 0 23 0 0 0 chr4 131862790 131862813 -52425849 + AT_rich Low_complexity Low_complexity 1 23 0 192 186 0 0 chr4 131862837 131862896 -52425766 + (TA)n Simple_repeat Simple_repeat 1 59 0 411 303 137 47 chr4 131862981 131863581 -52425081 + L1ME3A LINE L1 5257 5927 -243 27 81 0 0 chr4 131863880 131863942 -52424720 + AT_rich Low_complexity Low_complexity 1 62 0 28604 130 19 29 chr4 131863976 131870409 -52418253 - L1PA7 LINE L1 -1 6468 8 1304 241 0 22 chr4 131870607 131870923 -52417739 - AluJo SINE Alu 0 312 4 968 178 0 24 chr4 131870944 131871113 -52417549 - FRAM SINE Alu -14 162 1 628 266 12 29 chr4 131872336 131872509 -52416153 - MER69A DNA AcHobo 0 177 8 230 310 75 21 chr4 131872842 131873081 -52415581 - L1MEd LINE L1 -4927 1192 941 22 0 0 0 chr4 131873719 131873741 -52414921 + AT_rich Low_complexity Low_complexity 1 22 0 481 313 72 46 chr4 131874585 131874602 -52414060 + MLT1I LTR MaLR 48 63 -346 3630 155 14 78 chr4 131874602 131875440 -52413222 - LTR1 LTR ERV1 0 785 1 481 313 72 46 chr4 131875440 131875767 -52412895 + MLT1I LTR MaLR 63 401 -8 218 383 86 11 chr4 131876054 131876229 -52412433 - MIR3 SINE MIR 0 208 21 2272 167 54 56 chr4 131876980 131877478 -52411184 - LOR1a LTR ERV1 0 497 1 453 298 58 71 chr4 131877677 131877898 -52410764 + L1MC/D LINE L1 809 1026 -5093 1782 218 134 71 chr4 131877898 131878545 -52410117 + MER76 LTR ERV 1 688 0 453 298 58 71 chr4 131878545 131878649 -52410013 + L1MC/D LINE L1 1026 1130 -4989 311 317 112 23 chr4 131878660 131878919 -52409743 + L1MC/D LINE L1 3154 3435 -2694 1036 226 82 108 chr4 131878971 131879396 -52409266 + MLT1E1 LTR MaLR 239 652 -2 31 58 0 0 chr4 131879858 131879910 -52408752 + AT_rich Low_complexity Low_complexity 1 52 0 346 321 28 9 chr4 131880050 131880159 -52408503 - MIR SINE MIR -145 117 7 342 328 78 25 chr4 131880413 131880697 -52407965 + L1MC/D LINE L1 5282 5580 -645 3947 192 109 8 chr4 131880706 131881913 -52406749 + L1PA12 LINE L1 1 1927 -5654 345 200 0 15 chr4 131882098 131882163 -52406499 + L1PA12 LINE L1 1941 2004 -5577 1937 240 5 3 chr4 131882171 131882554 -52406108 + L1PA13 LINE L1 350 733 -6054 524 296 133 18 chr4 131882615 131882841 -52405821 + L1PA13 LINE L1 862 1113 -5674 12193 172 20 15 chr4 131882843 131885365 -52403297 + L1P LINE L1 2897 5425 -743 21 36 0 0 chr4 131885880 131885908 -52402754 + AT_rich Low_complexity Low_complexity 1 28 0 3820 203 84 28 chr4 131885989 131886634 -52402028 - L1MC3 LINE L1 0 7785 7057 4009 193 8 8 chr4 131886634 131887366 -52401296 + MER44D DNA MER2_type 2 605 0 3820 203 84 28 chr4 131887366 131887763 -52400899 - L1MC3 LINE L1 -728 7057 6684 902 273 53 65 chr4 131888659 131889168 -52399494 - L1ME1 LINE L1 -98 6068 5566 1250 200 35 62 chr4 131890123 131890510 -52398152 + MER67C LTR ERV1 3 403 -241 181 331 89 65 chr4 131891032 131891156 -52397506 - MIR3 SINE MIR -33 175 49 332 262 35 7 chr4 131891508 131891649 -52397013 + (TA)n Simple_repeat Simple_repeat 2 146 0 13001 68 5 1 chr4 131891845 131893562 -52395100 - L1PA6 LINE L1 -897 5249 3527 4028 191 133 21 chr4 131893570 131894382 -52394280 + L1PA6 LINE L1 5254 6153 0 435 52 0 0 chr4 131895497 131895555 -52393107 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 43 35 0 0 chr4 131896109 131896166 -52392496 + AT_rich Low_complexity Low_complexity 1 57 0 1500 193 57 106 chr4 131896604 131897090 -52391572 + MER66A LTR ERV1 100 477 -1 647 164 0 36 chr4 131897180 131897290 -52391372 - MER58B DNA MER1_type -3 338 233 218 339 83 9 chr4 131898253 131898362 -52390300 + L2 LINE L2 3155 3271 -1 29 28 0 0 chr4 131899290 131899326 -52389336 + AT_rich Low_complexity Low_complexity 1 36 0 224 250 188 0 chr4 131899601 131899681 -52388981 + L2 LINE L2 3219 3313 0 2379 175 50 53 chr4 131900633 131900694 -52387968 - L1MB1 LINE L1 -1 6167 6107 1794 161 74 5 chr4 131900694 131901072 -52387590 - L1MA3 LINE L1 0 6305 5902 2379 175 50 53 chr4 131901072 131901593 -52387069 - L1MB1 LINE L1 -61 6107 5624 1906 154 7 0 chr4 131901593 131901899 -52386763 - AluSx SINE Alu 0 312 5 2379 175 50 53 chr4 131901899 131901961 -52386701 - L1MB1 LINE L1 -544 5624 5563 375 231 13 0 chr4 131901972 131902050 -52386612 - L1MB1 LINE L1 -1210 4936 4858 2950 88 12 0 chr4 131902050 131902450 -52386212 + MLT2A1 LTR ERVL 1 405 -39 378 209 22 14 chr4 131902450 131902589 -52386073 + (TA)n Simple_repeat Simple_repeat 1 140 0 343 108 0 6 chr4 131902589 131902648 -52386014 + MLT2A1 LTR ERVL 396 444 0 1804 239 2 11 chr4 131902648 131903092 -52385570 - L1MB1 LINE L1 -1284 4862 4423 22 70 0 0 chr4 131903394 131903437 -52385225 + AT_rich Low_complexity Low_complexity 1 43 0 31 68 0 0 chr4 131903681 131903740 -52384922 + AT_rich Low_complexity Low_complexity 1 59 0 2514 92 23 3 chr4 131904788 131905136 -52383526 + THE1A LTR MaLR 1 355 0 10763 112 8 7 chr4 131905136 131906711 -52381951 + THE1A-int LTR MaLR 1 1576 -4 2423 109 14 0 chr4 131906715 131907065 -52381597 + THE1A LTR MaLR 1 355 0 998 218 20 105 chr4 131907737 131908136 -52380526 + MLT1A1 LTR MaLR 1 365 0 194 61 0 30 chr4 131908317 131908350 -52380312 + (TTTAA)n Simple_repeat Simple_repeat 2 33 0 22 35 0 0 chr4 131908843 131908872 -52379790 + AT_rich Low_complexity Low_complexity 1 29 0 527 178 42 0 chr4 131908971 131909089 -52379573 - L1MA7 LINE L1 -237 6054 5932 1618 190 49 64 chr4 131909226 131909616 -52379046 - MLT1B LTR MaLR -6 384 1 22 35 0 0 chr4 131909740 131909769 -52378893 + AT_rich Low_complexity Low_complexity 1 29 0 823 318 38 36 chr4 131909779 131910172 -52378490 - MLT1E3 LTR MaLR -17 607 214 22 35 0 0 chr4 131910307 131910336 -52378326 + AT_rich Low_complexity Low_complexity 1 29 0 841 55 9 0 chr4 131910562 131910671 -52377991 - L1PA7 LINE L1 -1 6153 6044 192 40 0 0 chr4 131910801 131910826 -52377836 + (G)n Simple_repeat Simple_repeat 1 25 0 6739 64 10 0 chr4 131911071 131912609 -52376053 - L1PA7 LINE L1 -1 6153 4604 17461 110 26 1 chr4 131912609 131915256 -52373406 + L1PA7 LINE L1 1876 4586 -1560 220 381 8 17 chr4 131916394 131916512 -52372150 + L2 LINE L2 2623 2739 -575 336 323 31 71 chr4 131916660 131916914 -52371748 + L2 LINE L2 3032 3275 -38 233 260 0 0 chr4 131917425 131917475 -52371187 + (TGGA)n Simple_repeat Simple_repeat 4 53 0 6879 65 3 1 chr4 131917784 131918785 -52369877 + L1PA5 LINE L1 5162 6141 -13 1466 119 14 0 chr4 131918829 131919048 -52369614 - AluSq SINE Alu 0 313 92 1060 153 18 0 chr4 131919048 131919218 -52369444 + L1P LINE L1 3526 3698 -2448 21 0 0 0 chr4 131921717 131921738 -52366924 + AT_rich Low_complexity Low_complexity 1 21 0 239 346 98 33 chr4 131921738 131921952 -52366710 + MIR SINE MIR 4 231 -31 21 0 0 0 chr4 131922066 131922087 -52366575 + AT_rich Low_complexity Low_complexity 1 21 0 1849 160 79 39 chr4 131922874 131923255 -52365407 - MER61B LTR ERV1 -29 396 1 3324 143 20 74 chr4 131923271 131924001 -52364661 + LTR8 LTR ERV1 1 691 0 2105 113 10 3 chr4 131924131 131924450 -52364212 + AluSx SINE Alu 2 312 0 1525 193 93 33 chr4 131924712 131925111 -52363551 - LTR49 LTR ERV1 0 595 173 1286 193 14 0 chr4 131925119 131925342 -52363320 - LTR38-int LTR ERV1 -1047 7073 6848 945 163 47 81 chr4 131925485 131925932 -52362730 - LTR38-int LTR ERV1 -2451 4225 2349 272 132 162 0 chr4 131925937 131926005 -52362657 - LTR38-int LTR ERV1 -6290 1830 1752 624 158 38 63 chr4 131926051 131926066 -52362596 - LTR38-int LTR ERV1 -5009 1749 1598 770 163 14 14 chr4 131926066 131926207 -52362455 - LTR57-int LTR ERVL -3962 1381 1241 1309 282 59 11 chr4 131926271 131926779 -52361883 - LTR38-int LTR ERV1 -1162 624 43 837 274 37 46 chr4 131926853 131927203 -52361459 - LTR38 LTR ERV1 -61 495 149 1908 127 6 46 chr4 131927518 131927841 -52360821 + AluSx SINE Alu 3 312 0 467 331 36 15 chr4 131927844 131928173 -52360489 + L1M4 LINE L1 3485 3820 -2326 1363 210 28 34 chr4 131928199 131928523 -52360139 + MER90 LTR ERV1 3 324 -290 219 328 0 0 chr4 131930363 131930421 -52358241 + MER5A DNA MER1_type 131 188 -1 1072 205 86 13 chr4 131931072 131931508 -52357154 - MLT1D LTR MaLR 0 505 1 2434 76 0 0 chr4 131934286 131934590 -52354072 + AluY SINE Alu 1 304 -7 207 0 0 0 chr4 131935391 131935414 -52353248 + (TG)n Simple_repeat Simple_repeat 2 24 0 200 200 0 0 chr4 131936334 131936384 -52352278 + A-rich Low_complexity Low_complexity 1 50 0 1569 195 0 10 chr4 131938602 131938926 -52349736 + AluJo SINE Alu 1 312 0 1375 145 4 13 chr4 131938981 131939233 -52349429 - AluSx SINE Alu 0 309 60 3586 66 45 0 chr4 131939346 131939815 -52348847 + LTR2B LTR ERV1 1 490 0 423 351 13 13 chr4 131939852 131940006 -52348656 - MIR3 SINE MIR -9 199 46 189 0 0 0 chr4 131940224 131940245 -52348417 + (CA)n Simple_repeat Simple_repeat 2 22 0 1678 176 74 46 chr4 131940345 131940816 -52347846 + LTR10A LTR ERV1 1 548 -61 26 30 0 0 chr4 131941590 131941623 -52347039 + AT_rich Low_complexity Low_complexity 1 33 0 23 54 0 0 chr4 131941684 131941721 -52346941 + AT_rich Low_complexity Low_complexity 1 37 0 2478 146 60 10 chr4 131942104 131942229 -52346433 - L1MA8 LINE L1 -5 6286 6169 207 0 0 0 chr4 131942229 131942252 -52346410 + (TG)n Simple_repeat Simple_repeat 1 23 0 2478 146 60 10 chr4 131942252 131942606 -52346056 - L1MA8 LINE L1 -122 6169 5783 211 224 0 0 chr4 131943429 131943478 -52345184 + T-rich Low_complexity Low_complexity 1 49 0 1921 154 0 10 chr4 131943480 131943785 -52344877 - AluSx SINE Alu -8 304 3 213 39 0 0 chr4 131944190 131944216 -52344446 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 596 278 74 56 chr4 131944223 131945633 -52343029 - L1ME3A LINE L1 -236 5928 4490 297 0 0 0 chr4 131945637 131945670 -52342992 + (CA)n Simple_repeat Simple_repeat 1 33 0 2008 116 0 0 chr4 131945711 131945987 -52342675 + AluSq SINE Alu 23 298 -15 1554 40 0 35 chr4 131946065 131946263 -52342399 + AluY SINE Alu 107 297 -14 447 290 114 72 chr4 131946269 131946628 -52342034 - L1ME3A LINE L1 -2107 4039 3666 386 279 79 0 chr4 131946825 131946965 -52341697 + L1M4 LINE L1 3065 3215 -2931 23 0 0 0 chr4 131947019 131947042 -52341620 + AT_rich Low_complexity Low_complexity 1 23 0 3956 89 2 0 chr4 131947635 131948174 -52340488 + L1PA13 LINE L1 5621 6160 -3 21 114 0 0 chr4 131948188 131948293 -52340369 + AT_rich Low_complexity Low_complexity 1 105 0 22 0 0 0 chr4 131948623 131948645 -52340017 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 131948782 131948804 -52339858 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 131949201 131949231 -52339431 + AT_rich Low_complexity Low_complexity 1 30 0 1790 143 0 7 chr4 131949374 131949646 -52339016 + AluSg SINE Alu 31 300 -10 187 273 18 0 chr4 131949841 131949896 -52338766 - MER5B DNA MER1_type -82 96 41 22 35 0 0 chr4 131950057 131950086 -52338576 + AT_rich Low_complexity Low_complexity 1 29 0 26 30 0 0 chr4 131950304 131950337 -52338325 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr4 131950624 131950653 -52338009 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 131951510 131951531 -52337131 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 131952206 131952228 -52336434 + AT_rich Low_complexity Low_complexity 1 22 0 695 268 12 12 chr4 131952580 131952748 -52335914 + MER45A DNA AcHobo 9 176 -2 1330 204 53 3 chr4 131952852 131953136 -52335526 - AluJb SINE Alu -12 300 3 714 189 8 0 chr4 131953712 131953839 -52334823 + L1MD3 LINE L1 7138 7265 -730 438 228 0 63 chr4 131953851 131953978 -52334684 + MLT1F1 LTR MaLR 2 120 -447 643 175 42 0 chr4 131953980 131954100 -52334562 + L1MD3 LINE L1 7411 7535 -460 294 231 31 163 chr4 131954323 131954483 -52334179 - L1ME3A LINE L1 -5 6165 6027 3256 96 2 8 chr4 131954982 131955452 -52333210 - L1PA10 LINE L1 0 6168 5702 455 258 15 0 chr4 131955653 131955785 -52332877 - L1MB7 LINE L1 -50 6134 6001 392 167 0 0 chr4 131955800 131955866 -52332796 - L1M4c LINE L1 -3970 2414 2349 1349 283 107 42 chr4 131955981 131956533 -52332129 - MLT1E LTR MaLR -5 588 1 25 51 0 0 chr4 131956817 131956856 -52331806 + AT_rich Low_complexity Low_complexity 1 39 0 3182 50 5 0 chr4 131956903 131957307 -52331355 - L1P LINE L1 -1370 4776 4371 189 0 0 0 chr4 131957904 131957925 -52330737 + (A)n Simple_repeat Simple_repeat 1 21 0 633 315 36 64 chr4 131958563 131958953 -52329709 + HERVL40-B1 LTR ERVL 2562 2940 -2590 365 267 55 68 chr4 131958988 131959134 -52329528 + HERVL40-B1 LTR ERVL 2934 3077 -2453 382 301 56 28 chr4 131959430 131959573 -52329089 + HERVL40-B1 LTR ERVL 3736 3882 -1648 * 555 250 68 93 chr4 131959554 131959907 -52328755 + HERVL40-B1 LTR ERVL 1767 4290 -1026 260 317 77 10 chr4 131960168 131960272 -52328390 + HERVL40-B1 LTR ERVL 2218 2328 -709 405 238 71 134 chr4 131960407 131960676 -52327986 + HERVL40-B1 LTR ERVL 2456 2707 -330 1873 168 0 3 chr4 131960932 131961235 -52327427 + AluSx SINE Alu 1 302 -10 388 303 85 6 chr4 131961252 131961417 -52327245 + MER89-int LTR ERV1 6315 6492 -309 * 691 283 94 17 chr4 131961393 131961626 -52327036 + HERVL40-B1 LTR ERVL 5277 5527 -3 1669 164 25 0 chr4 131963416 131963691 -52324971 + AluSg SINE Alu 9 290 -20 227 125 0 0 chr4 131964398 131964430 -52324232 + MER66B LTR ERV1 314 345 -141 336 363 79 21 chr4 131966056 131966384 -52322278 + L1 LINE L1 2648 2994 -3152 28 29 0 0 chr4 131966780 131966815 -52321847 + AT_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chr4 131967488 131967532 -52321130 + AT_rich Low_complexity Low_complexity 1 44 0 32 0 0 0 chr4 131967858 131967890 -52320772 + AT_rich Low_complexity Low_complexity 1 32 0 379 316 115 11 chr4 131968001 131968175 -52320487 - MIR SINE MIR 0 262 71 1081 235 112 30 chr4 131968198 131968564 -52320098 + MER57B LTR ERV1 39 434 0 7244 49 1 0 chr4 131968598 131970294 -52318368 - L1PA5 LINE L1 -2 6152 4457 267 261 15 0 chr4 131970905 131970970 -52317692 + MLT1L LTR MaLR 419 484 -131 915 202 100 12 chr4 131971413 131971842 -52316820 - MLT1D LTR MaLR -1 504 10 1047 248 14 67 chr4 131972858 131973206 -52315456 + MLT2B1 LTR ERVL 3 434 -86 1337 213 55 60 chr4 131973670 131974055 -52314607 + MLT1B LTR MaLR 6 388 -2 7377 198 5 4 chr4 131974323 131975892 -52312770 - HERVL18 LTR ERVL -4399 1648 9 2279 117 16 46 chr4 131975906 131976274 -52312388 - LTR18A LTR ERVL 0 357 1 247 346 25 0 chr4 131976663 131976744 -52311918 - MIR SINE MIR -62 146 64 21 0 0 0 chr4 131977080 131977101 -52311561 + AT_rich Low_complexity Low_complexity 1 21 0 1656 192 51 9 chr4 131977183 131977517 -52311145 + MLT1B LTR MaLR 1 348 -42 298 284 0 0 chr4 131977693 131977767 -52310895 + MER5A DNA MER1_type 36 109 -80 22 0 0 0 chr4 131979761 131979783 -52308879 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 131979915 131979936 -52308726 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 131981278 131981306 -52307356 + AT_rich Low_complexity Low_complexity 1 28 0 998 76 0 28 chr4 131981395 131981571 -52307091 - L1PA7 LINE L1 0 6154 6013 1470 220 7 0 chr4 131981628 131981919 -52306743 + AluJo SINE Alu 18 310 -2 252 233 33 0 chr4 131982260 131982320 -52306342 - L1MC4a LINE L1 -1379 6429 6368 333 0 0 0 chr4 131982369 131982406 -52306256 + (TA)n Simple_repeat Simple_repeat 1 37 0 1810 166 3 13 chr4 131982419 131982733 -52305929 - AluSx SINE Alu 0 312 2 278 233 41 0 chr4 131982777 131982850 -52305812 - L1MC4a LINE L1 -1492 6316 6241 237 167 0 0 chr4 131982938 131982992 -52305670 + (TG)n Simple_repeat Simple_repeat 2 55 0 2504 265 114 35 chr4 131982999 131984578 -52304084 - L1MEc LINE L1 -2442 3773 2057 2108 114 10 3 chr4 131984578 131984877 -52303785 - AluSx SINE Alu -11 301 1 2504 265 114 35 chr4 131984877 131985050 -52303612 - L1MEc LINE L1 -4158 2057 1899 417 261 43 25 chr4 131985100 131985261 -52303401 - L1MEc LINE L1 -4601 1795 1632 2141 64 14 25 chr4 131985263 131985544 -52303118 - AluY SINE Alu -11 300 23 1022 218 42 18 chr4 131985557 131985841 -52302821 - L1MB8 LINE L1 -1 6177 5887 665 281 80 0 chr4 131985895 131986094 -52302568 - MLT1E LTR MaLR -32 561 347 647 258 105 20 chr4 131986173 131986421 -52302241 - MLT1E LTR MaLR -385 269 1 567 218 0 0 chr4 131986652 131986785 -52301877 + MER63 DNA MER1_type 65 197 -864 1424 236 96 30 chr4 131986799 131987308 -52301354 + MER63 DNA MER1_type 428 970 -90 417 198 0 0 chr4 131987445 131987536 -52301126 + CT-rich Low_complexity Low_complexity 3 93 0 986 105 0 22 chr4 131987536 131987717 -52300945 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 883 155 0 17 chr4 131987742 131987923 -52300739 + CT-rich Low_complexity Low_complexity 3 180 0 203 88 29 0 chr4 131990664 131990698 -52297964 + (TATATG)n Simple_repeat Simple_repeat 4 38 0 22 106 0 0 chr4 131990765 131990850 -52297812 + AT_rich Low_complexity Low_complexity 1 85 0 300 287 11 32 chr4 131990871 131990965 -52297697 + L1MC4 LINE L1 6611 6702 -1340 240 130 0 0 chr4 131991120 131991166 -52297496 + (GA)n Simple_repeat Simple_repeat 2 47 0 201 200 0 20 chr4 131991373 131991423 -52297239 + A-rich Low_complexity Low_complexity 5 53 0 1032 291 36 25 chr4 131991516 131991960 -52296702 + L1ME2 LINE L1 5659 6107 -57 1666 156 6 32 chr4 131992080 131992394 -52296268 + AluJo SINE Alu 1 306 -6 1051 164 10 2 chr4 131992919 131993943 -52294719 - ALR/Alpha Satellite centromeric 0 1031 1 8557 70 0 0 chr4 131994046 131995245 -52293417 + L1P LINE L1 715 2041 -4105 1010 176 4 0 chr4 131995350 131996707 -52291955 - ALR/Alpha Satellite centromeric 0 1361 1 925 205 93 0 chr4 131997034 131997249 -52291413 + MER54A LTR ERVL 661 895 -6 3805 215 13 20 chr4 131997256 131998319 -52290343 - L1M3 LINE L1 -717 5451 4397 14224 226 49 48 chr4 131998340 132000141 -52288521 - L1MA2 LINE L1 -1 7722 5926 204 40 0 0 chr4 132000141 132000166 -52288496 + (TG)n Simple_repeat Simple_repeat 2 26 0 14224 226 49 48 chr4 132000166 132000398 -52288264 - L1MA2 LINE L1 -1797 5926 5696 405 0 0 0 chr4 132000398 132000443 -52288219 + (TG)n Simple_repeat Simple_repeat 2 46 0 14224 226 49 48 chr4 132000443 132006046 -52282616 - L1MA2 LINE L1 -2027 5696 71 478 252 31 24 chr4 132006058 132006185 -52282477 - L1MA2 LINE L1 -7423 142 15 665 178 8 8 chr4 132006252 132006370 -52282292 + MLT1A1 LTR MaLR 1 118 -247 597 227 43 0 chr4 132006378 132006519 -52282143 + L1 LINE L1 3645 3791 -2355 1982 149 56 0 chr4 132006523 132006878 -52281784 - THE1C LTR MaLR 0 375 1 8183 149 70 45 chr4 132006878 132007195 -52281467 - THE1C-int LTR MaLR 0 1580 1272 2071 136 0 0 chr4 132007195 132007497 -52281165 + AluSx SINE Alu 1 302 -10 8183 149 70 45 chr4 132007497 132008720 -52279942 - THE1C-int LTR MaLR -308 1272 1 1665 189 80 6 chr4 132008720 132009069 -52279593 - THE1C LTR MaLR 0 375 1 909 252 7 19 chr4 132009092 132009362 -52279300 + L1 LINE L1 3823 4089 -2057 1209 93 0 0 chr4 132009362 132009523 -52279139 + AluY SINE Alu 146 306 -5 2653 241 29 6 chr4 132009524 132010243 -52278419 + L1 LINE L1 4080 4815 -1331 21 36 0 0 chr4 132010274 132010302 -52278360 + AT_rich Low_complexity Low_complexity 1 28 0 4681 141 5 18 chr4 132012310 132012883 -52275779 - L1P LINE L1 -2078 4068 3506 3100 106 13 9 chr4 132012883 132013334 -52275328 - MLT2A2 LTR ERVL 0 453 1 4681 141 5 18 chr4 132013334 132013556 -52275106 - L1P LINE L1 -2640 3506 3283 6377 85 18 6 chr4 132013556 132014716 -52273946 + L1PA10 LINE L1 5010 6166 -2 21 57 0 0 chr4 132014939 132014974 -52273688 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 132015066 132015087 -52273575 + AT_rich Low_complexity Low_complexity 1 21 0 353 92 31 0 chr4 132015232 132015297 -52273365 - L1MB3 LINE L1 -2 6181 6115 243 225 0 28 chr4 132015297 132015368 -52273294 + MLT1C LTR MaLR 399 467 0 22 56 0 0 chr4 132015775 132015811 -52272851 + AT_rich Low_complexity Low_complexity 1 36 0 230 380 12 12 chr4 132016134 132016300 -52272362 - L2 LINE L2 -966 2348 2183 954 203 47 0 chr4 132016458 132016650 -52272012 - L1 LINE L1 -2141 4005 3805 498 165 12 0 chr4 132016641 132016726 -52271936 + L1MA4A LINE L1 4158 4243 -1903 * 3486 184 17 8 chr4 132016821 132017540 -52271122 + L1MA4A LINE L1 5571 6295 -8 265 175 79 0 chr4 132017543 132017606 -52271056 + MER58 DNA MER1_type 125 192 -2228 889 198 17 46 chr4 132017710 132017948 -52270714 + L1MA10 LINE L1 6085 6315 -19 513 239 104 46 chr4 132017948 132018275 -52270387 - MER69 DNA AcHobo -145 2381 2036 * 1060 344 35 4 chr4 132018269 132018725 -52269937 - MER69 DNA AcHobo -756 470 1 183 325 80 37 chr4 132018790 132018953 -52269709 - L2 LINE L2 -1250 2064 1895 459 186 10 20 chr4 132019090 132019192 -52269470 + AluJb SINE Alu 180 280 -32 1528 201 0 52 chr4 132019956 132020264 -52268398 - AluJb SINE Alu -20 292 1 1093 230 151 30 chr4 132020693 132021125 -52267537 - MER66A LTR ERV1 0 478 100 189 0 0 0 chr4 132021594 132021615 -52267047 + (TC)n Simple_repeat Simple_repeat 2 22 0 1522 272 85 74 chr4 132022376 132024552 -52264110 + L1M4 LINE L1 1021 3172 -3472 192 40 0 0 chr4 132024552 132024577 -52264085 + (TG)n Simple_repeat Simple_repeat 2 26 0 1522 272 85 74 chr4 132024577 132025147 -52263515 + L1M4 LINE L1 3172 3935 -2709 2140 90 6 56 chr4 132025147 132025469 -52263193 + AluY SINE Alu 1 306 -5 1522 272 85 74 chr4 132025469 132025687 -52262975 + L1M4 LINE L1 3935 4149 -2495 2093 290 54 20 chr4 132025939 132026226 -52262436 + L1M4 LINE L1 3121 3397 -2749 1914 121 6 56 chr4 132026226 132026549 -52262113 + AluY SINE Alu 1 307 -4 2093 290 54 20 chr4 132026549 132027362 -52261300 + L1M4 LINE L1 3397 4258 -1888 32 26 0 0 chr4 132027384 132027423 -52261239 + AT_rich Low_complexity Low_complexity 1 39 0 256 186 0 0 chr4 132027535 132027578 -52261084 - MLT1B LTR MaLR -3 387 345 2297 168 76 17 chr4 132027585 132028056 -52260606 + L1M4 LINE L1 4146 4644 -2000 519 354 56 37 chr4 132028058 132028434 -52260228 + L1MEc LINE L1 1071 1453 -4943 803 264 51 23 chr4 132028469 132028822 -52259840 - L1ME LINE L1 -576 5588 5225 206 176 29 29 chr4 132029076 132029144 -52259518 + (TTAA)n Simple_repeat Simple_repeat 3 70 0 1605 206 3 16 chr4 132030144 132030460 -52258202 - AluJo SINE Alu 0 312 1 392 312 91 78 chr4 132030679 132031281 -52257381 - L1MEc LINE L1 -5582 814 205 372 231 22 52 chr4 132031277 132031411 -52257251 + L1MEc LINE L1 817 946 -5450 * 948 255 38 73 chr4 132031403 132031818 -52256844 + L1ME1 LINE L1 5797 6334 0 2250 97 0 6 chr4 132033157 132033468 -52255194 - AluY SINE Alu -2 309 1 312 332 120 42 chr4 132034033 132034367 -52254295 + HAL1 LINE L1 1153 1512 -995 222 189 38 0 chr4 132035339 132035392 -52253270 + (TCTA)n Simple_repeat Simple_repeat 1 55 0 1526 204 39 7 chr4 132035443 132035723 -52252939 - AluJo SINE Alu -23 289 1 22 0 0 0 chr4 132037066 132037088 -52251574 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 132037644 132037672 -52250990 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr4 132038903 132038933 -52249729 + AT_rich Low_complexity Low_complexity 1 30 0 2417 195 47 79 chr4 132039435 132039702 -52248960 - MER67B LTR ERV1 -2 659 385 1861 162 0 3 chr4 132039702 132039998 -52248664 - AluSx SINE Alu -17 295 1 2417 195 47 79 chr4 132039998 132040172 -52248490 - MER67B LTR ERV1 -276 385 207 2062 121 7 0 chr4 132040172 132040470 -52248192 + AluSq SINE Alu 1 300 -13 2417 195 47 79 chr4 132040470 132040708 -52247954 - MER67B LTR ERV1 -454 207 1 1678 160 6 29 chr4 132041114 132041427 -52247235 - AluJo SINE Alu -6 306 1 984 286 34 27 chr4 132041547 132041959 -52246703 - L1ME2 LINE L1 -57 6501 6087 846 201 57 16 chr4 132041959 132042153 -52246509 + AluJo SINE Alu 88 289 -23 76 31 0 0 chr4 132042153 132042250 -52246412 + AT_rich Low_complexity Low_complexity 1 97 0 24 77 0 0 chr4 132042903 132042955 -52245707 + AT_rich Low_complexity Low_complexity 1 52 0 1074 163 0 0 chr4 132043902 132044074 -52244588 - AluJo SINE Alu -10 302 131 458 215 11 0 chr4 132044097 132044190 -52244472 - AluJo SINE Alu -171 131 38 846 298 14 39 chr4 132044395 132044658 -52244004 - L1ME2 LINE L1 -933 5607 5358 2370 119 0 51 chr4 132044658 132045053 -52243609 - THE1C LTR MaLR 0 375 1 846 298 14 39 chr4 132045053 132045228 -52243434 - L1ME2 LINE L1 -1182 5358 5180 251 264 14 0 chr4 132045228 132045300 -52243362 + LTR53 LTR ERVL 1 73 -446 * 703 284 10 15 chr4 132045297 132045498 -52243164 + LTR53 LTR ERVL 320 519 0 4053 243 63 59 chr4 132045510 132046549 -52242113 - L1ME2 LINE L1 -1368 5172 4138 32 26 0 0 chr4 132046549 132046588 -52242074 + AT_rich Low_complexity Low_complexity 1 39 0 4053 243 63 59 chr4 132046588 132046600 -52242062 - L1ME2 LINE L1 -2402 4138 4128 647 226 0 0 chr4 132046600 132046715 -52241947 - FLAM_C SINE Alu -18 115 1 4053 243 63 59 chr4 132046715 132048030 -52240632 - L1ME2 LINE L1 -2412 4128 2700 774 212 115 79 chr4 132048062 132048140 -52240522 - MER2 DNA MER2_type 0 344 270 2028 146 0 0 chr4 132048140 132048448 -52240214 + AluSx SINE Alu 1 308 -4 774 212 115 79 chr4 132048448 132048699 -52239963 - MER2 DNA MER2_type -74 270 3 1428 201 71 11 chr4 132048699 132049077 -52239585 - L1ME2 LINE L1 -4158 2382 1982 4236 242 121 42 chr4 132049079 132050796 -52237866 - L1ME2 LINE L1 -4662 1878 27 340 283 102 28 chr4 132050808 132050985 -52237677 + L1MC3 LINE L1 5693 5882 -1903 27 0 0 65 chr4 132051337 132051383 -52237279 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr4 132051464 132051486 -52237176 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 132052522 132052552 -52236110 + AT_rich Low_complexity Low_complexity 1 30 0 2199 130 3 0 chr4 132054029 132054337 -52234325 - AluSp SINE Alu -4 309 1 570 139 5 2 chr4 132054464 132054577 -52234085 - MSTA LTR MaLR -1 427 261 3851 113 6 82 chr4 132054577 132054803 -52233859 - THE1C-int LTR MaLR -921 659 417 1863 161 7 0 chr4 132054803 132055107 -52233555 - AluSx SINE Alu -6 306 1 3851 113 6 82 chr4 132055107 132055588 -52233074 - THE1C-int LTR MaLR -1163 417 6 1926 166 13 26 chr4 132055592 132055972 -52232690 - THE1C LTR MaLR 0 375 1 23 68 0 0 chr4 132056122 132056166 -52232496 + AT_rich Low_complexity Low_complexity 1 44 0 4914 169 36 33 chr4 132056175 132057243 -52231419 - MER11C LTR ERVK 0 1071 1 239 295 21 0 chr4 132057477 132057572 -52231090 - L1MCa LINE L1 -4926 1500 1404 28 0 0 0 chr4 132058376 132058404 -52230258 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr4 132058880 132058913 -52229749 + AT_rich Low_complexity Low_complexity 1 33 0 441 333 159 30 chr4 132059013 132059221 -52229441 - L2 LINE L2 -2 3311 3131 1792 143 0 7 chr4 132059221 132059507 -52229155 - AluSx SINE Alu -2 310 27 441 333 159 30 chr4 132059507 132059694 -52228968 - L2 LINE L2 -182 3131 2865 3392 176 36 41 chr4 132059820 132060593 -52228069 - LTR1 LTR ERV1 -16 769 1 496 321 126 19 chr4 132060593 132060911 -52227751 - L2 LINE L2 -667 2647 2296 3162 265 42 24 chr4 132060949 132061983 -52226679 + L1MCb LINE L1 13 1064 -4981 689 330 122 25 chr4 132062030 132062154 -52226508 - L2 LINE L2 -1087 2227 2116 2262 100 3 0 chr4 132062154 132062453 -52226209 + AluSx SINE Alu 1 300 -12 689 330 122 25 chr4 132062453 132062892 -52225770 - L2 LINE L2 -1198 2116 1609 1960 100 0 0 chr4 132063699 132063959 -52224703 - AluSg SINE Alu -18 292 33 260 219 61 37 chr4 132066078 132066160 -52222502 - L1MC4 LINE L1 -1339 6703 6620 318 78 31 16 chr4 132066160 132066224 -52222438 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 198 118 0 0 chr4 132066371 132066405 -52222257 + (TG)n Simple_repeat Simple_repeat 2 35 0 327 374 46 0 chr4 132066738 132066912 -52221750 + MIR SINE MIR 47 228 -34 283 276 190 0 chr4 132067047 132067163 -52221499 + MIR SINE MIR 121 258 -4 27 0 0 0 chr4 132067169 132067196 -52221466 + AT_rich Low_complexity Low_complexity 1 27 0 26 0 0 0 chr4 132067640 132067666 -52220996 + AT_rich Low_complexity Low_complexity 1 26 0 543 231 118 39 chr4 132068813 132069016 -52219646 - MER20 DNA MER1_type 0 219 1 312 319 62 12 chr4 132069072 132069232 -52219430 + L1M4 LINE L1 5222 5389 -757 27 49 0 0 chr4 132071582 132071623 -52217039 + AT_rich Low_complexity Low_complexity 1 41 0 244 329 63 51 chr4 132072227 132072385 -52216277 + MER5B DNA MER1_type 16 175 -3 339 25 0 0 chr4 132072750 132072790 -52215872 + (CA)n Simple_repeat Simple_repeat 2 41 0 249 305 124 9 chr4 132072970 132073075 -52215587 - L2 LINE L2 -238 3075 2959 2315 118 13 26 chr4 132073724 132074104 -52214558 + THE1C LTR MaLR 1 375 0 630 328 58 32 chr4 132075047 132075358 -52213304 - MLT1I LTR MaLR 0 409 91 206 239 22 0 chr4 132077399 132077445 -52211217 + CT-rich Low_complexity Low_complexity 2 48 0 13091 184 19 16 chr4 132077452 132081376 -52207286 - L1MA1 LINE L1 0 7364 3434 1578 208 78 17 chr4 132081396 132081756 -52206906 - L1MA1 LINE L1 -6827 382 1 207 356 109 5 chr4 132082083 132082285 -52206377 + MIR SINE MIR 40 262 0 565 242 139 16 chr4 132082920 132083112 -52205550 - MER2 DNA MER2_type 0 345 130 1224 210 103 28 chr4 132083112 132083431 -52205231 - MER2 DNA MER2_type 0 345 3 1945 141 16 35 chr4 132084733 132085110 -52203552 - L1MA4A LINE L1 -5 6298 5929 1067 114 63 0 chr4 132085110 132085285 -52203377 + MER30 DNA MER1_type 27 212 -18 1065 156 19 14 chr4 132085321 132085532 -52203130 - L1MA4A LINE L1 -341 5962 5751 226 209 44 55 chr4 132085540 132085631 -52203031 - L1M1 LINE L1 -495 5808 5719 275 343 14 14 chr4 132085639 132085779 -52202883 + PABL_A LTR ERV1 58 197 -463 967 244 31 44 chr4 132085791 132086110 -52202552 + PABL_B LTR ERV1 353 667 0 216 0 0 0 chr4 132086227 132086251 -52202411 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 817 291 75 25 chr4 132088297 132088734 -52199928 - L1MCc LINE L1 -5941 482 24 515 256 8 0 chr4 132088937 132089062 -52199600 - L1M3d LINE L1 -5379 512 387 24 0 0 0 chr4 132089105 132089129 -52199533 + AT_rich Low_complexity Low_complexity 1 24 0 230 89 101 13 chr4 132089185 132089264 -52199398 + (TA)n Simple_repeat Simple_repeat 2 87 0 229 202 83 0 chr4 132089277 132089361 -52199301 + L1MB1 LINE L1 6077 6167 -1 545 325 58 30 chr4 132089736 132090376 -52198286 + L1ME3A LINE L1 4620 5277 -869 407 317 33 21 chr4 132090435 132090678 -52197984 + L1ME3A LINE L1 5351 5596 -574 515 367 30 32 chr4 132090766 132091137 -52197525 - LTR16A LTR ERVL -2 448 79 895 287 110 21 chr4 132091202 132091637 -52197025 + L1ME3A LINE L1 5646 6119 -51 33 43 0 0 chr4 132091816 132091863 -52196799 + AT_rich Low_complexity Low_complexity 1 47 0 210 266 38 0 chr4 132092028 132092121 -52196541 + (TATATG)n Simple_repeat Simple_repeat 1 96 0 24 0 0 0 chr4 132092787 132092811 -52195851 + AT_rich Low_complexity Low_complexity 1 24 0 217 243 14 0 chr4 132093268 132093342 -52195320 + (TA)n Simple_repeat Simple_repeat 1 75 0 1833 167 6 22 chr4 132094562 132094879 -52193783 - AluSx SINE Alu 0 312 1 25 0 0 0 chr4 132095006 132095031 -52193631 + AT_rich Low_complexity Low_complexity 1 25 0 418 274 44 113 chr4 132095088 132095450 -52193212 + MER34 LTR ERV1 12 348 -194 305 295 62 23 chr4 132095604 132095733 -52192929 + MER34 LTR ERV1 378 511 -31 225 0 0 0 chr4 132096015 132096040 -52192622 + (CA)n Simple_repeat Simple_repeat 1 25 0 311 312 32 27 chr4 132096077 132096263 -52192399 + L2 LINE L2 1867 2053 -1261 378 327 30 18 chr4 132096280 132096445 -52192217 + MIR SINE MIR 31 197 -65 2396 209 22 4 chr4 132096636 132097100 -52191562 + MER70A LTR ERVL 1 472 0 252 101 67 34 chr4 132097449 132097538 -52191124 + (TA)n Simple_repeat Simple_repeat 1 92 0 322 136 75 34 chr4 132098333 132098480 -52190182 + (TA)n Simple_repeat Simple_repeat 1 153 0 31 68 0 0 chr4 132099887 132099946 -52188716 + AT_rich Low_complexity Low_complexity 1 59 0 559 233 13 73 chr4 132099979 132100211 -52188451 - L1MD2 LINE L1 -20 6599 6382 * 867 237 77 38 chr4 132100196 132100513 -52188149 - L1MD2 LINE L1 -274 6148 5831 334 224 0 0 chr4 132100543 132100628 -52188034 + L1MA2 LINE L1 5987 6071 -233 1206 220 17 31 chr4 132100628 132100978 -52187684 - L1MD2 LINE L1 -635 5867 5523 * 1986 236 44 61 chr4 132100955 132101609 -52187053 - L1MD2 LINE L1 -2869 3537 2900 252 0 0 0 chr4 132101609 132101637 -52187025 + (TG)n Simple_repeat Simple_repeat 1 28 0 1986 236 44 61 chr4 132101637 132101868 -52186794 - L1MD2 LINE L1 -3506 2900 2667 567 253 47 61 chr4 132101870 132102084 -52186578 - MER61D LTR ERV1 -10 784 338 1128 249 106 63 chr4 132102482 132103518 -52185144 - L1MD2 LINE L1 -3762 2644 1571 817 174 0 0 chr4 132103520 132103675 -52184987 + L1MA5 LINE L1 4872 5026 -1120 3654 156 32 57 chr4 132103687 132104478 -52184184 + L1MA5 LINE L1 5530 6300 0 266 399 91 8 chr4 132104500 132104743 -52183919 - L3 LINE CR1 -1197 380 118 1137 216 44 116 chr4 132104983 132105484 -52183178 + MLT1D LTR MaLR 1 465 -40 2147 236 20 29 chr4 132105494 132106236 -52182426 - L1MD2 LINE L1 -4823 1583 845 2006 223 8 70 chr4 132106237 132106740 -52181922 - MER70A LTR ERVL 0 472 1 14322 183 38 11 chr4 132106748 132107178 -52181484 - MER70A-int LTR ERVL -1 5022 4605 1816 134 3 39 chr4 132107178 132107483 -52181179 + AluSp SINE Alu 1 294 -19 14322 183 38 11 chr4 132107483 132109626 -52179036 - MER70A-int LTR ERVL -418 4605 2380 2039 111 26 11 chr4 132109626 132110018 -52178644 + LTR7 LTR ERV1 1 450 0 721 111 0 34 chr4 132110025 132110142 -52178520 + HERVH LTR ERV1 2613 2725 -4988 7276 111 8 3 chr4 132110144 132111634 -52177028 + HERVH LTR ERV1 3582 5010 -2703 2863 102 7 11 chr4 132111653 132112086 -52176576 + HERVH LTR ERV1 7283 7713 0 1959 109 37 17 chr4 132112086 132112477 -52176185 + LTR7 LTR ERV1 1 450 0 481 191 12 0 chr4 132112477 132112561 -52176101 - MER70A-int LTR ERVL -2639 2384 2300 4925 202 83 7 chr4 132112580 132113572 -52175090 - MER70A-int LTR ERVL -3947 1076 10 2328 230 4 17 chr4 132113581 132113813 -52174849 - MER70A LTR ERVL 0 472 239 2184 75 17 10 chr4 132113813 132114107 -52174555 - AluSq SINE Alu -17 296 1 2328 230 4 17 chr4 132114107 132114352 -52174310 - MER70A LTR ERVL -233 239 1 1809 308 149 19 chr4 132114352 132115095 -52173567 - L1MD2 LINE L1 -5561 848 9 23 54 0 0 chr4 132115400 132115437 -52173225 + AT_rich Low_complexity Low_complexity 1 37 0 1281 191 108 22 chr4 132115520 132115797 -52172865 - AluJo SINE Alu -1 301 1 344 91 0 0 chr4 132115924 132115968 -52172694 - Alu SINE Alu -258 44 1 2512 221 35 69 chr4 132118423 132119107 -52169555 + MER76 LTR ERV 1 661 -27 1851 114 21 18 chr4 132119194 132119505 -52169157 + AluSx SINE Alu 1 312 0 474 198 10 31 chr4 132119571 132119667 -52168995 + Tigger3b DNA MER2_type 1 94 -1137 4310 156 71 19 chr4 132119686 132119944 -52168718 + Tigger3b DNA MER2_type 332 575 -2453 7781 26 0 0 chr4 132119944 132121294 -52167368 - L1PA3 LINE L1 -3 6152 4801 4310 156 71 19 chr4 132121294 132121890 -52166772 + Tigger3b DNA MER2_type 575 1231 0 967 255 31 31 chr4 132122369 132122663 -52165999 + MER58B DNA MER1_type 36 329 -12 46 61 0 26 chr4 132123359 132123473 -52165189 + AT_rich Low_complexity Low_complexity 1 111 0 2618 145 2 19 chr4 132123473 132123893 -52164769 + THE1B-int LTR MaLR 460 872 -708 3301 120 6 0 chr4 132123993 132124459 -52164203 + THE1B-int LTR MaLR 1112 1580 0 2147 132 33 36 chr4 132124459 132124824 -52163838 + THE1B LTR MaLR 1 364 0 4393 173 21 34 chr4 132124824 132125762 -52162900 - L1PA13 LINE L1 -4417 2380 1441 1721 239 117 2 chr4 132125764 132126207 -52162455 - LTR22 LTR ERVK 0 509 16 1167 253 44 113 chr4 132126220 132126860 -52161802 + LTR4 LTR ERV1 1 596 0 728 331 88 14 chr4 132126934 132127287 -52161375 - L1PA13 LINE L1 -5532 1255 877 288 268 0 0 chr4 132127304 132127360 -52161302 - L1PA13 LINE L1 -5970 817 762 9843 72 0 22 chr4 132127647 132129102 -52159560 + SST1 Satellite centromeric 141 1563 0 375 89 0 0 chr4 132129118 132129174 -52159488 + (TG)n Simple_repeat Simple_repeat 1 56 0 262 235 0 25 chr4 132129191 132129272 -52159390 + CT-rich Low_complexity Low_complexity 2 80 0 10735 70 10 21 chr4 132130001 132131581 -52157081 + SST1 Satellite centromeric 1 1563 0 498 61 0 0 chr4 132131597 132131663 -52156999 + (TG)n Simple_repeat Simple_repeat 1 66 0 278 222 0 25 chr4 132131680 132131761 -52156901 + CT-rich Low_complexity Low_complexity 2 80 0 10823 75 0 21 chr4 132132487 132134083 -52154579 + SST1 Satellite centromeric 1 1563 0 426 114 0 0 chr4 132134099 132134169 -52154493 + (TG)n Simple_repeat Simple_repeat 1 70 0 263 256 0 13 chr4 132134175 132134253 -52154409 + CT-rich Low_complexity Low_complexity 2 78 0 10820 68 10 21 chr4 132134982 132136562 -52152100 + SST1 Satellite centromeric 1 1563 0 354 80 0 0 chr4 132136578 132136628 -52152034 + (TG)n Simple_repeat Simple_repeat 1 50 0 262 235 0 25 chr4 132136645 132136726 -52151936 + CT-rich Low_complexity Low_complexity 2 80 0 10819 77 0 19 chr4 132137453 132139046 -52149616 + SST1 Satellite centromeric 1 1563 0 462 108 0 0 chr4 132139062 132139136 -52149526 + (TG)n Simple_repeat Simple_repeat 1 74 0 251 234 0 26 chr4 132139142 132139219 -52149443 + CT-rich Low_complexity Low_complexity 2 76 0 10706 70 11 21 chr4 132139947 132141526 -52147136 + SST1 Satellite centromeric 1 1563 0 444 67 0 0 chr4 132141542 132141602 -52147060 + (TG)n Simple_repeat Simple_repeat 1 60 0 185 196 18 0 chr4 132141636 132141692 -52146970 + CT-rich Low_complexity Low_complexity 2 58 0 6531 70 1 13 chr4 132142429 132143351 -52145311 + SST1 Satellite centromeric 1 911 -652 35 83 0 0 chr4 132143577 132143661 -52145001 + AT_rich Low_complexity Low_complexity 1 84 0 1177 258 71 48 chr4 132144390 132144968 -52143694 - L1ME2 LINE L1 -16 6148 5558 1114 274 65 33 chr4 132145120 132145663 -52142999 - L1ME2 LINE L1 -127 6106 5547 1132 270 87 58 chr4 132145717 132146358 -52142304 - L1ME2 LINE L1 -5603 793 134 1425 288 108 24 chr4 132146391 132147630 -52141032 + Charlie2a DNA MER1_type 292 1631 -1231 23 54 0 0 chr4 132148084 132148121 -52140541 + AT_rich Low_complexity Low_complexity 1 37 0 1853 126 0 0 chr4 132148173 132148436 -52140226 + AluSg SINE Alu 35 297 -13 694 338 42 42 chr4 132148817 132149311 -52139351 + L1MEd LINE L1 843 1336 -5036 246 271 52 0 chr4 132149368 132149464 -52139198 + L1MEd LINE L1 1292 1392 -4992 256 232 0 0 chr4 132149508 132149564 -52139098 + GA-rich Low_complexity Low_complexity 1 56 0 2711 287 37 43 chr4 132149786 132151003 -52137659 + L1PA13 LINE L1 1 1224 -5563 189 0 0 0 chr4 132151003 132151024 -52137638 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 2711 287 37 43 chr4 132151024 132151331 -52137331 + L1PA13 LINE L1 1224 1531 -5256 1646 156 26 23 chr4 132151331 132151639 -52137023 + AluSx SINE Alu 2 310 -2 2711 287 37 43 chr4 132151639 132151804 -52136858 + L1PA13 LINE L1 1531 2075 -4712 1978 162 32 19 chr4 132151815 132152185 -52136477 - THE1C LTR MaLR 0 375 1 5284 145 8 6 chr4 132152185 132152979 -52135683 - THE1C-int LTR MaLR 0 1580 786 2143 218 47 0 chr4 132152978 132153473 -52135189 + L1 LINE L1 4540 5057 -1089 * 7317 263 17 11 chr4 132153496 132155767 -52132895 - L1PA12 LINE L1 -2333 5251 2937 1692 110 99 41 chr4 132155767 132156059 -52132603 - AluY SINE Alu -2 309 1 7317 263 17 11 chr4 132156059 132157418 -52131244 - L1PA12 LINE L1 -4647 2937 1587 446 292 41 65 chr4 132157468 132157807 -52130855 - L1PA12 LINE L1 -5509 2072 1539 1946 179 16 28 chr4 132157811 132158175 -52130487 - THE1B LTR MaLR -4 360 1 11489 109 5 2 chr4 132158180 132159750 -52128912 - THE1B-int LTR MaLR -5 1575 1 2022 169 19 25 chr4 132159750 132160116 -52128546 - THE1B LTR MaLR 0 364 1 1707 309 33 63 chr4 132160116 132161366 -52127296 - L1PA12 LINE L1 -5819 1762 8 724 223 51 6 chr4 132161374 132161531 -52127131 - MLT1A2 LTR MaLR -54 320 157 2262 89 0 40 chr4 132161656 132161980 -52126682 + AluY SINE Alu 1 311 0 22 0 0 0 chr4 132161982 132162004 -52126658 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr4 132162088 132162132 -52126530 + AT_rich Low_complexity Low_complexity 1 44 0 24 53 0 0 chr4 132162171 132162209 -52126453 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr4 132162247 132162273 -52126389 + AT_rich Low_complexity Low_complexity 1 26 0 25 51 0 0 chr4 132162290 132162329 -52126333 + AT_rich Low_complexity Low_complexity 1 39 0 32 26 0 0 chr4 132162387 132162426 -52126236 + AT_rich Low_complexity Low_complexity 1 39 0 1242 34 0 0 chr4 132162595 132162741 -52125921 - L1PA6 LINE L1 -4 6150 6005 32 26 0 0 chr4 132162835 132162874 -52125788 + AT_rich Low_complexity Low_complexity 1 39 0 30 0 0 0 chr4 132163140 132163170 -52125492 + AT_rich Low_complexity Low_complexity 1 30 0 777 243 122 9 chr4 132164437 132164651 -52124011 + MER8 DNA MER2_type 2 239 0 369 243 142 14 chr4 132165028 132165176 -52123486 + L1ME4a LINE L1 5715 5881 -240 14080 158 22 6 chr4 132165323 132165648 -52123014 - Tigger1 DNA MER2_type -1 2417 2099 1901 135 10 0 chr4 132165648 132165951 -52122711 - AluSx SINE Alu 0 312 7 14080 158 22 6 chr4 132165951 132167981 -52120681 - Tigger1 DNA MER2_type -319 2099 24 22 35 0 0 chr4 132168230 132168259 -52120403 + AT_rich Low_complexity Low_complexity 1 29 0 295 326 144 60 chr4 132168832 132169117 -52119545 + L2 LINE L2 3001 3309 -4 239 240 0 0 chr4 132170383 132170433 -52118229 - L2 LINE L2 -9 3263 3214 2101 78 0 0 chr4 132170741 132171032 -52117630 - AluY SINE Alu 0 304 14 524 306 115 46 chr4 132171101 132171581 -52117081 + LTR33A LTR ERVL 7 519 -4 189 299 35 94 chr4 132171781 132171982 -52116680 - L2 LINE L2 -6 3307 3119 640 336 123 14 chr4 132172089 132172529 -52116133 - L2 LINE L2 -353 2961 2474 1614 210 104 28 chr4 132174594 132175027 -52113635 + MER31B LTR ERV1 1 466 0 1828 142 7 13 chr4 132175170 132175480 -52113182 + AluSx SINE Alu 1 308 -4 30 0 0 0 chr4 132175525 132175555 -52113107 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr4 132175806 132175832 -52112830 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr4 132176748 132176771 -52111891 + AT_rich Low_complexity Low_complexity 1 23 0 30 69 0 0 chr4 132177152 132177210 -52111452 + AT_rich Low_complexity Low_complexity 1 58 0 207 214 0 0 chr4 132177609 132177651 -52111011 + T-rich Low_complexity Low_complexity 1 42 0 216 111 0 0 chr4 132178628 132178664 -52109998 + (TG)n Simple_repeat Simple_repeat 1 36 0 25 31 0 0 chr4 132179140 132179172 -52109490 + AT_rich Low_complexity Low_complexity 1 32 0 243 0 0 0 chr4 132179326 132179353 -52109309 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1549 189 33 0 chr4 132179453 132179754 -52108908 - 7SLRNA srpRNA srpRNA 0 320 10 2465 148 21 16 chr4 132179985 132180411 -52108251 - MSTA LTR MaLR 0 428 1 7894 198 37 14 chr4 132180411 132182025 -52106637 - MSTA-int LTR MaLR 0 1651 1 835 134 31 0 chr4 132182027 132182154 -52106508 - MSTA LTR MaLR -2 426 296 281 174 14 0 chr4 132182179 132182248 -52106414 + (TG)n Simple_repeat Simple_repeat 1 70 0 10897 71 0 21 chr4 132183100 132184696 -52103966 + SST1 Satellite centromeric 1 1563 0 519 90 0 0 chr4 132184712 132184790 -52103872 + (TG)n Simple_repeat Simple_repeat 1 78 0 212 188 16 0 chr4 132184813 132184877 -52103785 + CT-rich Low_complexity Low_complexity 2 66 0 11011 69 0 21 chr4 132185606 132187203 -52101459 + SST1 Satellite centromeric 1 1563 0 354 107 0 0 chr4 132187219 132187275 -52101387 + (TG)n Simple_repeat Simple_repeat 1 56 0 185 196 18 0 chr4 132187291 132187347 -52101315 + CT-rich Low_complexity Low_complexity 2 58 0 10911 69 1 26 chr4 132188084 132189687 -52098975 + SST1 Satellite centromeric 1 1563 0 384 118 0 0 chr4 132189703 132189771 -52098891 + (TG)n Simple_repeat Simple_repeat 1 68 0 203 190 17 0 chr4 132189790 132189848 -52098814 + CT-rich Low_complexity Low_complexity 2 60 0 10935 70 1 21 chr4 132190585 132192180 -52096482 + SST1 Satellite centromeric 1 1563 0 303 167 0 0 chr4 132192196 132192262 -52096400 + (TG)n Simple_repeat Simple_repeat 1 66 0 180 228 0 0 chr4 132192281 132192338 -52096324 + CT-rich Low_complexity Low_complexity 2 58 0 10876 74 0 21 chr4 132193072 132194668 -52093994 + SST1 Satellite centromeric 1 1563 0 372 77 0 0 chr4 132194684 132194736 -52093926 + (TG)n Simple_repeat Simple_repeat 1 52 0 278 222 0 25 chr4 132194753 132194834 -52093828 + CT-rich Low_complexity Low_complexity 2 80 0 10745 70 10 21 chr4 132195562 132197143 -52091519 + SST1 Satellite centromeric 1 1563 0 444 67 0 0 chr4 132197159 132197219 -52091443 + (TG)n Simple_repeat Simple_repeat 1 60 0 185 196 18 0 chr4 132197253 132197309 -52091353 + CT-rich Low_complexity Low_complexity 2 58 0 9753 71 14 19 chr4 132198046 132199591 -52089071 + SST1 Satellite centromeric 1 1536 -27 1623 166 38 3 chr4 132199573 132199887 -52088775 - MSTA LTR MaLR -103 325 1 * 23 0 0 0 chr4 132201953 132201976 -52086686 + AT_rich Low_complexity Low_complexity 1 23 0 1680 138 27 4 chr4 132202006 132202266 -52086396 - AluSx SINE Alu -12 300 35 207 0 0 0 chr4 132203044 132203067 -52085595 + (TCTA)n Simple_repeat Simple_repeat 1 23 0 24 32 0 0 chr4 132203963 132203994 -52084668 + AT_rich Low_complexity Low_complexity 1 31 0 48 32 0 0 chr4 132204643 132204705 -52083957 + AT_rich Low_complexity Low_complexity 1 62 0 1106 265 85 47 chr4 132205086 132205430 -52083232 + L1M4 LINE L1 2948 3277 -2869 2043 146 0 0 chr4 132205430 132205738 -52082924 + AluSx SINE Alu 1 308 -4 1106 265 85 47 chr4 132205738 132206179 -52082483 + L1M4 LINE L1 3277 3763 -2383 180 179 0 0 chr4 132206184 132206223 -52082439 + (TG)n Simple_repeat Simple_repeat 2 40 0 296 272 33 0 chr4 132206518 132206610 -52082052 + CT-rich Low_complexity Low_complexity 6 100 0 1627 248 47 65 chr4 132206624 132207301 -52081361 - L1M4 LINE L1 -1909 4237 3573 451 247 134 41 chr4 132208721 132208915 -52079747 + MER77 LTR ERV1 14 225 -380 1240 280 56 30 chr4 132208935 132209363 -52079299 + MER77 LTR ERV1 161 599 -6 452 273 76 15 chr4 132209413 132209611 -52079051 - L1MEc LINE L1 -4574 1822 1613 306 333 80 27 chr4 132209813 132210038 -52078624 - L2 LINE L2 -4 3309 3073 299 335 71 37 chr4 132210403 132210728 -52077934 - L1MEc LINE L1 -5284 921 586 1640 72 18 0 chr4 132210739 132210960 -52077702 - L1PA8 LINE L1 0 6172 5948 4435 79 15 0 chr4 132210960 132211558 -52077104 - L1PA7 LINE L1 -42 6112 5506 2185 86 0 32 chr4 132211836 132212150 -52076512 + AluY SINE Alu 1 304 -7 25 0 0 0 chr4 132213421 132213446 -52075216 + AT_rich Low_complexity Low_complexity 1 25 0 1045 271 73 3 chr4 132213823 132214163 -52074499 + MLT1A1 LTR MaLR 1 364 -1 197 281 79 22 chr4 132215233 132215322 -52073340 - L2 LINE L2 -4 3268 3175 1403 199 51 18 chr4 132215770 132216102 -52072560 - MER2 DNA MER2_type 0 344 2 196 389 0 0 chr4 132216373 132216445 -52072217 + L2 LINE L2 2843 2914 -358 538 249 162 6 chr4 132216450 132216623 -52072039 + MLT1A1 LTR MaLR 1 200 -165 445 116 3 5 chr4 132216617 132216694 -52071968 + MLT1A1 LTR MaLR 289 390 0 * 771 347 13 10 chr4 132216730 132217119 -52071543 + L1MEc LINE L1 411 800 -5596 339 270 98 25 chr4 132217198 132217483 -52071179 + L1MEc LINE L1 972 1277 -5119 326 259 25 49 chr4 132217574 132217736 -52070926 + HAL1 LINE L1 1389 1546 -961 425 299 16 71 chr4 132217846 132218030 -52070632 + MER96 DNA MER1_type 2 175 0 323 268 0 0 chr4 132218154 132218236 -52070426 + L1MEc LINE L1 1985 2066 -4330 353 263 74 41 chr4 132218303 132218546 -52070116 + L1MEc LINE L1 2047 2297 -4099 312 268 132 20 chr4 132218549 132218739 -52069923 + L1MEc LINE L1 2332 2503 -3712 548 204 83 0 chr4 132218743 132218875 -52069787 + L1MA3 LINE L1 6163 6305 0 1031 220 51 33 chr4 132218986 132219332 -52069330 + MLT1A1 LTR MaLR 1 302 -63 28 0 0 0 chr4 132219344 132219372 -52069290 + AT_rich Low_complexity Low_complexity 1 28 0 561 285 55 40 chr4 132219433 132220015 -52068647 + L1MEc LINE L1 3190 3780 -2435 278 288 85 28 chr4 132220022 132220234 -52068428 + L1MEc LINE L1 3952 4175 -2040 588 254 20 10 chr4 132220248 132220449 -52068213 + L1MEc LINE L1 4525 4727 -1488 30 27 0 0 chr4 132220451 132220488 -52068174 + AT_rich Low_complexity Low_complexity 1 37 0 1481 276 75 41 chr4 132220514 132221755 -52066907 + L1M4 LINE L1 2269 3551 -2595 1917 170 13 19 chr4 132222143 132222520 -52066142 - THE1C LTR MaLR 0 375 1 281 307 82 33 chr4 132222521 132222765 -52065897 - L2 LINE L2 -123 3190 2935 1881 152 66 20 chr4 132222784 132223132 -52065530 - THE1B LTR MaLR 0 364 1 304 321 113 23 chr4 132223135 132223400 -52065262 - L1MEc LINE L1 -6015 381 93 207 105 26 0 chr4 132223401 132223439 -52065223 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 431 283 21 18 chr4 132223545 132223828 -52064834 - L1MEc LINE L1 -4079 2317 2034 538 289 127 10 chr4 132223835 132224143 -52064519 + L1M4 LINE L1 4035 4378 -1768 1102 260 31 36 chr4 132224144 132224560 -52064102 + L1MC4 LINE L1 6896 7309 -733 1111 271 11 31 chr4 132224645 132224999 -52063663 + L1MC4 LINE L1 7321 7667 -375 230 333 28 0 chr4 132226754 132226826 -52061836 - L2 LINE L2 -47 3266 3193 2418 151 38 7 chr4 132227112 132227529 -52061133 - MER57B LTR ERV1 -4 430 1 764 321 47 18 chr4 132227831 132228171 -52060491 - LTR16B LTR ERVL -6 458 109 3776 165 82 43 chr4 132228178 132229047 -52059615 + MER4D LTR ERV1 1 903 0 254 295 154 53 chr4 132229813 132230098 -52058564 + MLT1J2 LTR MaLR 137 450 0 377 276 102 6 chr4 132231852 132231992 -52056670 + MLT1J LTR MaLR 44 232 -279 485 306 97 8 chr4 132232566 132232814 -52055848 - L1ME3 LINE L1 -9 6153 5884 1627 196 3 3 chr4 132233297 132233603 -52055059 - AluJb SINE Alu -6 306 1 213 78 62 31 chr4 132233632 132233696 -52054966 + (TA)n Simple_repeat Simple_repeat 2 67 0 2714 196 21 48 chr4 132234187 132234810 -52053852 + L1MA6 LINE L1 5694 6299 -1 25 0 0 0 chr4 132235762 132235787 -52052875 + AT_rich Low_complexity Low_complexity 1 25 0 1942 173 39 18 chr4 132236509 132236596 -52052066 - MER1B DNA MER1_type -2375 337 253 1835 246 32 60 chr4 132236596 132237166 -52051496 + MLT2B3 LTR ERVL 1 554 0 1942 173 39 18 chr4 132237166 132237408 -52051254 - MER1B DNA MER1_type -2459 253 1 900 188 19 123 chr4 132237408 132237716 -52050946 - MER93b LTR ERV1 0 373 98 2690 162 32 28 chr4 132238092 132238270 -52050392 - MER61D LTR ERV1 0 501 325 1937 138 3 10 chr4 132238270 132238566 -52050096 - AluSg SINE Alu -15 295 2 2690 162 32 28 chr4 132238566 132238886 -52049776 - MER61D LTR ERV1 -176 325 1 10957 182 44 63 chr4 132238887 132239159 -52049503 - HUERS-P3b LTR ERV1 -1 6995 6719 180 0 0 0 chr4 132239159 132239179 -52049483 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 10957 182 44 63 chr4 132239179 132241641 -52047021 - HUERS-P3b LTR ERV1 -277 6719 4211 1945 148 33 33 chr4 132241641 132242005 -52046657 - THE1B LTR MaLR 0 364 1 10957 182 44 63 chr4 132242005 132243403 -52045259 - HUERS-P3b LTR ERV1 -2785 4211 2787 2212 68 3 59 chr4 132243403 132243725 -52044937 - AluY SINE Alu -7 304 1 10957 182 44 63 chr4 132243725 132244353 -52044309 - HUERS-P3b LTR ERV1 -4209 2787 57 907 182 66 140 chr4 132244352 132244762 -52043900 - MER61D-int LTR ERV1 -4740 477 195 * 2578 165 5 5 chr4 132244858 132245259 -52043403 - MER61D LTR ERV1 -100 401 1 501 231 0 0 chr4 132246458 132246562 -52042100 - FRAM SINE Alu -10 166 63 270 159 48 16 chr4 132246562 132246625 -52042037 + LTR68 LTR ERV1 23 87 -653 1203 217 47 27 chr4 132246812 132247111 -52041551 + LTR68 LTR ERV1 309 613 -127 30 0 0 0 chr4 132247208 132247238 -52041424 + AT_rich Low_complexity Low_complexity 1 30 0 11792 233 26 32 chr4 132247337 132252051 -52036611 - L1PB3 LINE L1 -11 6859 2153 4981 239 52 31 chr4 132252037 132254718 -52033944 - L1PB3 LINE L1 -5066 1797 3 * 29 70 0 0 chr4 132254842 132254899 -52033763 + AT_rich Low_complexity Low_complexity 1 57 0 183 186 0 0 chr4 132256598 132256641 -52032021 + GA-rich Low_complexity Low_complexity 2 44 0 602 230 77 24 chr4 132257002 132257250 -52031412 + LTR37B LTR ERV1 208 468 0 444 334 66 70 chr4 132257381 132257690 -52030972 + L1MEd LINE L1 447 755 -5364 1954 142 3 3 chr4 132257690 132257985 -52030677 + AluSx SINE Alu 2 296 -16 444 334 66 70 chr4 132257985 132258193 -52030469 + L1MEd LINE L1 755 962 -5157 248 266 53 32 chr4 132258314 132258408 -52030254 + L1MEd LINE L1 1161 1256 -4863 736 291 295 22 chr4 132258821 132258940 -52029722 + L2 LINE L2 1864 1949 -1365 260 49 49 0 chr4 132258940 132258981 -52029681 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 736 291 295 22 chr4 132258981 132259414 -52029248 + L2 LINE L2 1949 2567 -747 207 343 99 28 chr4 132259487 132259700 -52028962 + L2 LINE L2 2996 3223 -90 927 261 85 35 chr4 132259849 132260190 -52028472 + MLT1C LTR MaLR 110 467 0 26 50 0 0 chr4 132260472 132260512 -52028150 + AT_rich Low_complexity Low_complexity 1 40 0 331 331 90 28 chr4 132260575 132260931 -52027731 + L1ME2 LINE L1 5499 5876 -288 21 0 0 0 chr4 132261745 132261766 -52026896 + AT_rich Low_complexity Low_complexity 1 21 0 26 109 0 0 chr4 132262207 132262317 -52026345 + AT_rich Low_complexity Low_complexity 1 110 0 22 70 0 0 chr4 132262506 132262549 -52026113 + AT_rich Low_complexity Low_complexity 1 43 0 1350 263 57 46 chr4 132262831 132263403 -52025259 + MLT1G LTR MaLR 13 549 0 274 276 40 0 chr4 132264563 132264639 -52024023 + (TATATG)n Simple_repeat Simple_repeat 3 81 0 217 339 94 31 chr4 132264741 132264965 -52023697 - MIR SINE MIR 0 262 25 943 197 52 142 chr4 132265255 132265656 -52023006 - MLT1A1 LTR MaLR 0 365 1 264 252 117 0 chr4 132265656 132265767 -52022895 + MER103 DNA DNA 31 154 -12 21 0 0 0 chr4 132266453 132266474 -52022188 + AT_rich Low_complexity Low_complexity 1 21 0 651 162 0 0 chr4 132266474 132266585 -52022077 - AluJb SINE Alu -14 298 188 1672 221 133 79 chr4 132266587 132267488 -52021174 - LTR1B LTR ERV1 -4 1016 1 1154 182 5 0 chr4 132267488 132267680 -52020982 - AluJb SINE Alu -119 193 1 29 60 0 0 chr4 132267707 132267757 -52020905 + AT_rich Low_complexity Low_complexity 1 50 0 48 43 0 0 chr4 132268030 132268099 -52020563 + AT_rich Low_complexity Low_complexity 1 69 0 204 321 18 0 chr4 132268305 132268361 -52020301 - L2 LINE L2 -212 3060 3004 377 302 88 17 chr4 132268367 132268685 -52019977 + L1MC/D LINE L1 5308 5648 -530 598 289 115 17 chr4 132268816 132269051 -52019611 + MIR SINE MIR 5 262 0 994 251 5 0 chr4 132271504 132271727 -52016935 + MER58A DNA MER1_type 1 224 0 278 239 127 70 chr4 132271739 132271881 -52016781 + MER69A DNA AcHobo 20 169 -8 2063 153 19 25 chr4 132271982 132272348 -52016314 + THE1B LTR MaLR 1 364 0 10462 104 37 5 chr4 132272348 132273879 -52014783 + THE1B-int LTR MaLR 1 1580 0 1914 164 39 25 chr4 132273879 132274238 -52014424 + THE1B LTR MaLR 1 364 0 938 82 32 6 chr4 132275698 132275856 -52012806 + (TTTC)n Simple_repeat Simple_repeat 2 163 0 1969 129 4 0 chr4 132275858 132276138 -52012524 - AluSq SINE Alu -32 281 1 22 0 0 0 chr4 132276753 132276775 -52011887 + AT_rich Low_complexity Low_complexity 1 22 0 574 71 12 0 chr4 132277437 132277522 -52011140 - L1PA13 LINE L1 0 6163 6078 403 197 13 0 chr4 132277920 132277996 -52010666 + MER45A DNA AcHobo 101 177 -1 1392 236 109 16 chr4 132278263 132278686 -52009976 + MLT1C LTR MaLR 6 467 0 634 244 0 0 chr4 132279210 132279337 -52009325 + MER45A DNA AcHobo 52 178 0 2172 292 74 60 chr4 132282572 132282878 -52005784 + L2 LINE L2 1098 1398 -1916 219 69 0 0 chr4 132282878 132282907 -52005755 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 2172 292 74 60 chr4 132282907 132283001 -52005661 + L2 LINE L2 1398 1489 -1825 752 235 17 65 chr4 132283001 132283231 -52005431 - MER20 DNA MER1_type 0 219 1 2172 292 74 60 chr4 132283231 132284035 -52004627 + L2 LINE L2 1489 2319 -995 821 292 106 49 chr4 132284049 132284538 -52004124 + LTR33A LTR ERVL 2 518 -5 722 276 51 96 chr4 132284543 132285255 -52003407 + L2 LINE L2 2315 3070 -243 180 293 69 0 chr4 132285438 132285496 -52003166 + L3 LINE CR1 932 993 -584 339 317 10 0 chr4 132285613 132285717 -52002945 + MIR SINE MIR 110 214 -48 198 278 127 32 chr4 132286385 132286511 -52002151 + L2 LINE L2 2717 2854 -460 2376 78 0 0 chr4 132286706 132287001 -52001661 + AluY SINE Alu 1 295 -16 180 0 0 0 chr4 132287027 132287047 -52001615 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 288 267 85 36 chr4 132287535 132287700 -52000962 + L1MC5 LINE L1 7692 7864 -97 24 0 0 0 chr4 132288226 132288250 -52000412 + AT_rich Low_complexity Low_complexity 1 24 0 1031 355 26 0 chr4 132289649 132290072 -51998590 - LTR16B LTR ERVL -9 455 22 24 32 0 0 chr4 132290187 132290218 -51998444 + AT_rich Low_complexity Low_complexity 1 31 0 26 82 0 0 chr4 132291024 132291085 -51997577 + AT_rich Low_complexity Low_complexity 1 61 0 24 67 0 0 chr4 132291144 132291189 -51997473 + AT_rich Low_complexity Low_complexity 1 45 0 715 241 23 17 chr4 132291390 132291564 -51997098 + MER45A DNA AcHobo 1 175 -3 213 39 0 0 chr4 132291669 132291695 -51996967 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 290 331 130 41 chr4 132293703 132294141 -51994521 + L2 LINE L2 590 1066 -2248 1288 235 19 107 chr4 132294745 132294979 -51993683 - MLT1D LTR MaLR -28 477 224 1095 155 10 5 chr4 132294979 132295186 -51993476 + L1MA6 LINE L1 6087 6294 -6 1288 235 19 107 chr4 132295186 132295442 -51993220 - MLT1D LTR MaLR -281 224 33 2087 147 37 6 chr4 132295442 132295795 -51992867 - THE1B LTR MaLR 0 364 1 1288 235 19 107 chr4 132295795 132295826 -51992836 - MLT1D LTR MaLR -472 33 1 183 42 0 0 chr4 132296039 132296063 -51992599 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 383 245 21 0 chr4 132296561 132296655 -51992007 + MER115 DNA AcHobo 597 692 -1 384 255 11 0 chr4 132297132 132297226 -51991436 + MIR SINE MIR 103 197 -65 1785 158 37 0 chr4 132297233 132297343 -51991319 + AluSx SINE Alu 1 105 -207 243 0 0 0 chr4 132297343 132297370 -51991292 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1785 158 37 0 chr4 132297370 132297557 -51991105 + AluSx SINE Alu 105 309 -3 4064 94 50 0 chr4 132298408 132299012 -51989650 + L1PA8 LINE L1 5539 6172 0 634 251 86 80 chr4 132299633 132300051 -51988611 + L1ME1 LINE L1 4755 5178 -968 8888 94 8 1 chr4 132300051 132302078 -51986584 - L1PA7 LINE L1 -10 6144 4102 634 251 86 80 chr4 132302078 132302146 -51986516 + L1ME1 LINE L1 5178 5244 -902 440 288 92 20 chr4 132302192 132302345 -51986317 + MER77 LTR ERV1 62 225 -380 * 1831 230 55 40 chr4 132302313 132302769 -51985893 + MER77 LTR ERV1 143 605 0 1903 253 73 49 chr4 132302769 132303675 -51984987 + L1ME1 LINE L1 5243 6161 -5 24 32 0 0 chr4 132303815 132303846 -51984816 + AT_rich Low_complexity Low_complexity 1 31 0 450 300 70 34 chr4 132304995 132305352 -51983310 + L1ME LINE L1 5458 5824 -346 289 318 167 26 chr4 132305894 132306086 -51982576 - MIR SINE MIR 0 262 44 242 56 28 0 chr4 132306206 132306242 -51982420 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 25 31 0 0 chr4 132307088 132307120 -51981542 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chr4 132307131 132307174 -51981488 + AT_rich Low_complexity Low_complexity 1 43 0 24 67 0 0 chr4 132308381 132308426 -51980236 + AT_rich Low_complexity Low_complexity 1 45 0 26 0 0 0 chr4 132308502 132308528 -51980134 + AT_rich Low_complexity Low_complexity 1 26 0 29 47 0 0 chr4 132308932 132308975 -51979687 + AT_rich Low_complexity Low_complexity 1 43 0 26 64 0 0 chr4 132309218 132309265 -51979397 + AT_rich Low_complexity Low_complexity 1 47 0 1743 214 82 17 chr4 132310619 132311035 -51977627 - MER74A LTR ERVL 0 558 116 420 335 29 28 chr4 132311253 132311551 -51977111 - L1MC/D LINE L1 -521 5641 5503 2178 126 0 0 chr4 132311616 132311918 -51976744 + AluSx SINE Alu 1 302 -10 742 220 5 47 chr4 132312786 132312977 -51975685 + MLT1A2 LTR MaLR 6 188 -186 574 216 61 39 chr4 132313011 132313192 -51975470 + MLT1A2 LTR MaLR 186 370 -4 7767 216 31 22 chr4 132313996 132314930 -51973732 + L1 LINE L1 2983 3908 -2238 2223 48 44 0 chr4 132314930 132315224 -51973438 + AluY SINE Alu 1 306 0 7767 216 31 22 chr4 132315224 132316337 -51972325 + L1 LINE L1 3908 5048 -1098 1982 201 48 0 chr4 132316367 132316764 -51971898 + L1PA16 LINE L1 5742 6157 -9 1537 275 47 32 chr4 132316875 132317341 -51971321 - MER74A LTR ERVL -85 473 1 1932 228 7 15 chr4 132317341 132317744 -51970918 + MER89-int LTR ERV1 6401 6800 -1 1503 234 32 26 chr4 132317748 132318178 -51970484 + MER89 LTR ERV1 28 559 0 583 274 66 23 chr4 132318178 132318481 -51970181 + L1ME2 LINE L1 4006 4321 -1825 1166 201 5 5 chr4 132318482 132318696 -51969966 + MER46A DNA MER2_type 1 214 -22 258 330 31 10 chr4 132318717 132318814 -51969848 - L2 LINE L2 0 3313 3215 705 216 7 0 chr4 132318816 132318955 -51969707 - MER67A LTR ERV1 0 543 404 1446 193 0 0 chr4 132318955 132319229 -51969433 - L1PA16 LINE L1 -16 6150 5877 400 298 57 40 chr4 132319266 132319689 -51968973 + L1ME2 LINE L1 4326 4755 -1391 648 198 48 8 chr4 132319852 132319978 -51968684 - FRAM SINE Alu -45 131 1 1295 273 49 53 chr4 132320332 132321209 -51967453 + L1ME2 LINE L1 5282 6132 -38 325 274 91 51 chr4 132321234 132321431 -51967231 + HAL1b LINE L1 451 655 -693 22 0 0 0 chr4 132321565 132321587 -51967075 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr4 132321970 132322005 -51966657 + AT_rich Low_complexity Low_complexity 1 35 0 319 294 33 46 chr4 132323200 132323353 -51965309 - HAL1 LINE L1 -1463 1044 894 201 239 0 0 chr4 132323416 132323462 -51965200 + CT-rich Low_complexity Low_complexity 3 48 0 23 33 0 0 chr4 132323842 132323872 -51964790 + AT_rich Low_complexity Low_complexity 1 30 0 47 19 0 0 chr4 132323941 132323995 -51964667 + AT_rich Low_complexity Low_complexity 1 54 0 317 355 70 33 chr4 132324331 132324683 -51963979 - L1MD3 LINE L1 -504 5829 5522 253 299 47 16 chr4 132324855 132324982 -51963680 + L1ME LINE L1 5656 5786 -376 637 232 91 18 chr4 132325965 132326185 -51962477 - MLT1K LTR MaLR -119 469 234 41 103 0 0 chr4 132326386 132326532 -51962130 + AT_rich Low_complexity Low_complexity 1 146 0 646 158 73 61 chr4 132326756 132326857 -51961805 - L1MC3 LINE L1 0 7785 7680 1993 150 0 16 chr4 132326857 132327171 -51961491 - AluJb SINE Alu -3 309 1 646 158 73 61 chr4 132327171 132327233 -51961429 - L1MC3 LINE L1 -105 7680 7620 1173 154 119 9 chr4 132327364 132327695 -51960967 - L1M2 LINE L1 -743 5403 5186 22 0 0 0 chr4 132328299 132328321 -51960341 + AT_rich Low_complexity Low_complexity 1 22 0 326 314 0 0 chr4 132328325 132328427 -51960235 + MER103 DNA DNA 26 127 -39 1137 276 36 62 chr4 132328939 132329602 -51959060 + L1M4 LINE L1 3595 4240 -1906 223 278 33 11 chr4 132329614 132329704 -51958958 + GA-rich Low_complexity Low_complexity 6 97 0 340 313 84 37 chr4 132330333 132330547 -51958115 + L1M4 LINE L1 3883 4106 -2040 503 288 6 5 chr4 132330561 132330759 -51957903 + L1M4 LINE L1 4456 4655 -1491 28 29 0 0 chr4 132330766 132330801 -51957861 + AT_rich Low_complexity Low_complexity 1 35 0 360 304 61 43 chr4 132330827 132331267 -51957395 + L1M4 LINE L1 2269 2716 -3430 195 259 74 0 chr4 132331532 132331586 -51957076 - L2 LINE L2 -5 3308 3251 709 163 14 14 chr4 132331632 132331773 -51956889 + L1PA16 LINE L1 6026 6166 0 862 278 61 49 chr4 132331834 132332015 -51956647 + L1MC4 LINE L1 6517 6694 -1348 1993 133 0 3 chr4 132332015 132332316 -51956346 - AluY SINE Alu -11 300 1 862 278 61 49 chr4 132332316 132332627 -51956035 + L1MC4 LINE L1 6694 7015 -1027 1026 151 12 6 chr4 132332800 132332972 -51955690 + AluSp SINE Alu 121 293 -20 193 320 51 0 chr4 132333403 132333481 -51955181 + MIR SINE MIR 76 157 -105 23 78 0 0 chr4 132334221 132334272 -51954390 + AT_rich Low_complexity Low_complexity 1 51 0 1020 164 89 50 chr4 132334960 132335241 -51953421 + MER58B DNA MER1_type 45 336 -5 248 216 0 0 chr4 132335315 132335366 -51953296 + MER58B DNA MER1_type 291 341 0 2294 87 7 0 chr4 132335415 132335714 -51952948 + AluSp SINE Alu 1 301 -12 1937 134 17 0 chr4 132336322 132336621 -51952041 + AluSp SINE Alu 1 304 -9 192 418 16 25 chr4 132336786 132336908 -51951754 + L2 LINE L2 3149 3269 -3 184 352 28 62 chr4 132338401 132338546 -51950116 + MIR SINE MIR 66 205 -57 180 0 0 0 chr4 132338743 132338763 -51949899 + (TA)n Simple_repeat Simple_repeat 2 21 0 2330 169 14 27 chr4 132339178 132339662 -51949000 - L1MA5 LINE L1 0 6300 5823 311 370 163 25 chr4 132340123 132340602 -51948060 + L2 LINE L2 2147 2691 -623 195 286 0 0 chr4 132340727 132340783 -51947879 + L2 LINE L2 2698 2753 -561 3909 219 89 25 chr4 132341269 132341537 -51947125 - L1MC4a LINE L1 0 7808 7559 2211 79 0 16 chr4 132341537 132341840 -51946822 + AluY SINE Alu 6 303 -8 3909 219 89 25 chr4 132341840 132342700 -51945962 - L1MC4a LINE L1 -249 7559 6681 2309 98 0 3 chr4 132342700 132343005 -51945657 + AluY SINE Alu 1 304 -7 3909 219 89 25 chr4 132343005 132343182 -51945480 - L1MC4a LINE L1 -1127 6681 6517 709 163 14 14 chr4 132343243 132343384 -51945278 - L1PA16 LINE L1 0 6166 6026 195 259 74 0 chr4 132343430 132343484 -51945178 + L2 LINE L2 3251 3308 -5 25 75 0 0 chr4 132344725 132344778 -51943884 + AT_rich Low_complexity Low_complexity 1 53 0 193 320 51 0 chr4 132345516 132345594 -51943068 - MIR SINE MIR -105 157 76 1975 132 3 10 chr4 132346025 132346320 -51942342 - AluSq SINE Alu -20 293 1 769 37 0 19 chr4 132346512 132346619 -51942043 + (TCTA)n Simple_repeat Simple_repeat 2 106 0 29 0 0 0 chr4 132347185 132347214 -51941448 + AT_rich Low_complexity Low_complexity 1 29 0 30 27 0 0 chr4 132347814 132347851 -51940811 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr4 132347928 132347951 -51940711 + AT_rich Low_complexity Low_complexity 1 23 0 475 295 100 50 chr4 132347963 132348404 -51940258 + L1M4 LINE L1 2110 2572 -3574 1561 201 160 9 chr4 132348465 132348870 -51939792 + MER31B LTR ERV1 1 543 0 280 296 36 86 chr4 132348871 132348986 -51939676 - L2 LINE L2 -630 2684 2584 1198 253 19 35 chr4 132348986 132349357 -51939305 + MLT1A1 LTR MaLR 1 365 0 280 296 36 86 chr4 132349357 132349461 -51939201 - L2 LINE L2 -730 2584 2476 244 343 82 0 chr4 132350002 132350136 -51938526 + L1ME LINE L1 3 147 -5923 259 320 23 16 chr4 132350257 132350385 -51938277 + L1ME LINE L1 153 281 -5980 401 240 9 173 chr4 132350756 132351047 -51937615 + L1M4 LINE L1 3850 4083 -2063 1431 225 39 51 chr4 132351047 132351554 -51937108 - MLT1D LTR MaLR -4 501 1 401 240 9 173 chr4 132351554 132351591 -51937071 + L1M4 LINE L1 4083 4124 -2022 317 332 60 32 chr4 132351601 132351818 -51936844 - L2 LINE L2 -1528 1786 1564 329 234 0 65 chr4 132351885 132352008 -51936654 - L1MC4 LINE L1 -1339 6983 1996 2320 81 3 10 chr4 132352148 132352455 -51936207 + AluY SINE Alu 1 305 -6 34 0 0 0 chr4 132352791 132352825 -51935837 + AT_rich Low_complexity Low_complexity 1 34 0 657 278 38 19 chr4 132352941 132353150 -51935512 + MER58A DNA MER1_type 2 214 -10 650 298 72 41 chr4 132354832 132355195 -51933467 - MLT1I LTR MaLR -34 375 2 467 261 120 35 chr4 132355274 132355621 -51933041 - MLT1J2 LTR MaLR 0 450 3 853 193 58 82 chr4 132356193 132356436 -51932226 + MER8 DNA MER2_type 1 237 -2 397 319 42 9 chr4 132356546 132356749 -51931913 + MIR SINE MIR 27 235 -27 519 168 46 0 chr4 132356750 132356863 -51931799 - LTR12 LTR ERV1 0 714 362 256 238 0 36 chr4 132356863 132356947 -51931715 - LTR30 LTR ERV1 -98 624 544 646 112 112 178 chr4 132356947 132357188 -51931474 - LTR12 LTR ERV1 -437 277 53 229 250 0 0 chr4 132357188 132357240 -51931422 - LTR30 LTR ERV1 -670 52 1 296 302 42 72 chr4 132357410 132357584 -51931078 - Charlie2 DNA MER1_type -2604 258 93 1713 250 57 35 chr4 132357584 132358092 -51930570 + LTR40a LTR ERVL 1 519 0 296 302 42 72 chr4 132358092 132358182 -51930480 - Charlie2 DNA MER1_type -2769 93 2 319 289 154 0 chr4 132359963 132360067 -51928595 - MIR3 SINE MIR -6 202 83 22 70 0 0 chr4 132360134 132360177 -51928485 + AT_rich Low_complexity Low_complexity 1 43 0 26 30 0 0 chr4 132360450 132360483 -51928179 + AT_rich Low_complexity Low_complexity 1 33 0 745 329 114 40 chr4 132361362 132362274 -51926388 - L2 LINE L2 -1 3312 2329 26 50 0 0 chr4 132362286 132362326 -51926336 + AT_rich Low_complexity Low_complexity 1 40 0 38 0 0 0 chr4 132362465 132362503 -51926159 + AT_rich Low_complexity Low_complexity 1 38 0 2006 106 25 3 chr4 132363858 132364141 -51924521 - AluSx SINE Alu -19 293 5 35 0 0 0 chr4 132364742 132364777 -51923885 + AT_rich Low_complexity Low_complexity 1 35 0 39 95 0 0 chr4 132364940 132365056 -51923606 + AT_rich Low_complexity Low_complexity 1 116 0 25 0 0 0 chr4 132365325 132365350 -51923312 + AT_rich Low_complexity Low_complexity 1 25 0 245 310 52 9 chr4 132365715 132365831 -51922831 - L1ME LINE L1 -479 5642 5522 233 233 50 0 chr4 132366010 132366070 -51922592 + MLT1J1 LTR MaLR 69 131 -315 2025 124 3 0 chr4 132366428 132366719 -51921943 + AluSg SINE Alu 1 292 -18 22 0 0 0 chr4 132368254 132368276 -51920386 + AT_rich Low_complexity Low_complexity 1 22 0 246 273 35 71 chr4 132368860 132369044 -51919618 + L1ME LINE L1 5508 5678 -443 324 0 0 0 chr4 132369044 132369080 -51919582 + (CA)n Simple_repeat Simple_repeat 2 37 0 246 273 35 71 chr4 132369080 132369140 -51919522 + L1ME LINE L1 5678 5739 -382 249 97 35 71 chr4 132369198 132369311 -51919351 + (TTTA)n Simple_repeat Simple_repeat 3 111 0 842 341 148 2 chr4 132369367 132369819 -51918843 + MER69 DNA AcHobo 1 518 -2008 542 269 75 63 chr4 132369834 132370165 -51918497 + LTR68 LTR ERV1 114 448 -292 950 299 70 13 chr4 132370355 132370814 -51917848 + L1ME3A LINE L1 5515 5999 -171 1621 249 52 74 chr4 132370968 132371578 -51917084 + MER77 LTR ERV1 9 605 0 1357 159 13 76 chr4 132372076 132372377 -51916285 - AluJo SINE Alu -30 282 1 1814 190 18 0 chr4 132372436 132372762 -51915900 - Tigger1 DNA MER2_type -2085 333 2 316 174 128 0 chr4 132372793 132372879 -51915783 + L1MC4 LINE L1 6609 6705 -1337 470 121 30 10 chr4 132372880 132372979 -51915683 + (TA)n Simple_repeat Simple_repeat 1 101 0 1047 197 70 36 chr4 132372980 132373318 -51915344 + MLT1A2 LTR MaLR 1 365 0 4394 135 8 3 chr4 132374640 132375349 -51913313 - L1PA13 LINE L1 0 6163 5451 359 365 18 6 chr4 132375354 132375524 -51913138 - MER5B DNA MER1_type -3 175 4 308 375 81 18 chr4 132376764 132377036 -51911626 + L1MEd LINE L1 7 295 -5824 267 237 35 79 chr4 132377136 132377250 -51911412 + L1MEd LINE L1 457 565 -5554 244 229 0 0 chr4 132377327 132377375 -51911287 - MER58B DNA MER1_type -15 326 279 332 299 57 6 chr4 132377377 132377554 -51911108 + L1MEd LINE L1 965 1150 -4969 582 249 69 116 chr4 132377947 132378369 -51910293 + MER57A LTR ERV1 2 403 0 388 304 32 0 chr4 132378972 132379097 -51909565 + MIR SINE MIR 67 195 -67 256 290 85 54 chr4 132379391 132379615 -51909047 + L1MEd LINE L1 1027 1257 -4862 326 314 0 0 chr4 132379987 132380089 -51908573 - MER103 DNA DNA -39 127 26 22 0 0 0 chr4 132380093 132380115 -51908547 + AT_rich Low_complexity Low_complexity 1 22 0 3011 160 92 21 chr4 132380717 132381282 -51907380 + L1MA6 LINE L1 5183 5801 -499 453 55 41 0 chr4 132381282 132381355 -51907307 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 3011 160 92 21 chr4 132381355 132381501 -51907161 + L1MA6 LINE L1 5801 5935 -365 22 0 0 0 chr4 132381544 132381566 -51907096 + AT_rich Low_complexity Low_complexity 1 22 0 201 218 0 58 chr4 132383172 132383259 -51905403 + T-rich Low_complexity Low_complexity 4 85 0 2990 182 36 12 chr4 132383804 132384393 -51904269 + MER6A DNA MER2_type 2 604 -1 622 244 0 0 chr4 132384549 132384672 -51903990 - FLAM_A SINE Alu -9 124 2 1169 172 108 19 chr4 132384858 132385126 -51903536 - AluJo SINE Alu 0 312 21 24 32 0 0 chr4 132385321 132385352 -51903310 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr4 132385501 132385525 -51903137 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr4 132386170 132386199 -51902463 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 132386748 132386770 -51901892 + AT_rich Low_complexity Low_complexity 1 22 0 687 327 132 32 chr4 132388172 132388730 -51899932 + L2 LINE L2 2670 3288 -25 2082 168 29 88 chr4 132389093 132389205 -51899457 + L1PB4 LINE L1 5661 5778 -378 5553 67 0 4 chr4 132389205 132389916 -51898746 + L1PA7 LINE L1 5438 6147 -7 2082 168 29 88 chr4 132389916 132390327 -51898335 + L1PB4 LINE L1 5778 6153 -3 1354 174 136 0 chr4 132391999 132392257 -51896405 - AluJb SINE Alu -8 294 2 2300 128 22 145 chr4 132392744 132393253 -51895409 - MER4E LTR ERV1 -29 750 305 2107 127 0 6 chr4 132393838 132394152 -51894510 + AluSq SINE Alu 1 312 -1 207 0 0 0 chr4 132395319 132395342 -51893320 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1732 130 42 21 chr4 132395344 132395628 -51893034 - AluSg1 SINE Alu -19 290 1 30 45 0 0 chr4 132396024 132396068 -51892594 + AT_rich Low_complexity Low_complexity 1 44 0 212 86 29 0 chr4 132396084 132396119 -51892543 + (TA)n Simple_repeat Simple_repeat 1 36 0 203 103 26 0 chr4 132396122 132396161 -51892501 + GA-rich Low_complexity Low_complexity 2 41 0 230 395 68 25 chr4 132396382 132396544 -51892118 + L2 LINE L2 3104 3272 0 2257 100 0 0 chr4 132397392 132397692 -51890970 - AluY SINE Alu -11 300 1 850 177 0 0 chr4 132397951 132398098 -51890564 - AluSg/x SINE Alu -5 305 159 1476 269 75 59 chr4 132398103 132398511 -51890151 - L1ME2 LINE L1 -191 5973 5573 2217 80 0 35 chr4 132398511 132398822 -51889840 - AluY SINE Alu -11 300 1 1476 269 75 59 chr4 132398822 132399746 -51888916 - L1ME2 LINE L1 -591 5573 4602 2094 127 0 13 chr4 132399746 132400053 -51888609 - AluY SINE Alu -8 303 1 1476 269 75 59 chr4 132400053 132400507 -51888155 - L1ME2 LINE L1 -1562 4602 4157 9172 111 12 0 chr4 132400507 132401802 -51886860 - THE1B-int LTR MaLR -270 1310 1 2177 113 48 22 chr4 132401802 132402157 -51886505 - THE1B LTR MaLR 0 364 1 302 301 83 62 chr4 132402578 132402917 -51885745 + HAL1 LINE L1 849 1194 -1313 330 347 53 43 chr4 132402943 132403338 -51885324 + HAL1 LINE L1 1241 1639 -868 22 0 0 0 chr4 132403374 132403396 -51885266 + AT_rich Low_complexity Low_complexity 1 22 0 2341 179 31 21 chr4 132403470 132403956 -51884706 - L1P LINE L1 -1580 4566 4076 1023 310 25 2 chr4 132403974 132404374 -51884288 + L1ME1 LINE L1 1420 1828 -4568 682 247 69 6 chr4 132404408 132404582 -51884080 + MER58A DNA MER1_type 2 186 -38 2216 90 3 0 chr4 132404610 132404899 -51883763 + AluSc SINE Alu 12 301 -8 1017 224 57 75 chr4 132404940 132405261 -51883401 + L1ME1 LINE L1 1871 2196 -4200 2665 174 44 19 chr4 132405261 132405789 -51882873 - MER34 LTR ERV1 -1 541 1 1017 224 57 75 chr4 132405789 132405836 -51882826 + L1ME1 LINE L1 2196 2242 -4154 2141 126 0 3 chr4 132405836 132406145 -51882517 + AluSg SINE Alu 1 308 -2 1017 224 57 75 chr4 132406145 132406161 -51882501 + L1ME1 LINE L1 2242 2257 -4139 387 60 0 0 chr4 132406161 132406211 -51882451 + (TA)n Simple_repeat Simple_repeat 2 51 0 1017 224 57 75 chr4 132406211 132406315 -51882347 + L1ME1 LINE L1 2257 2352 -4044 3431 265 51 26 chr4 132406324 132407748 -51880914 + L1ME1 LINE L1 4064 5452 -783 1534 171 3 61 chr4 132407748 132408058 -51880604 + AluJo SINE Alu 5 296 -16 1860 122 87 0 chr4 132408060 132408348 -51880314 + AluSq SINE Alu 1 313 0 3431 265 51 26 chr4 132408348 132408806 -51879856 + L1ME1 LINE L1 5452 5996 -239 337 297 16 77 chr4 132408811 132408914 -51879748 + MIR SINE MIR 2 91 -171 2627 3 0 0 chr4 132408914 132409198 -51879464 - AluY SINE Alu -12 299 16 337 297 16 77 chr4 132409198 132409276 -51879386 + MIR SINE MIR 91 172 -90 228 196 10 62 chr4 132409276 132409373 -51879289 + (TATAA)n Simple_repeat Simple_repeat 2 93 0 59 65 0 0 chr4 132409495 132409603 -51879059 + AT_rich Low_complexity Low_complexity 1 108 0 906 235 103 103 chr4 132410194 132410378 -51878284 + MLT1D LTR MaLR 3 186 -319 2069 134 3 10 chr4 132410378 132410692 -51877970 - AluSx SINE Alu 0 312 1 906 235 103 103 chr4 132410692 132411010 -51877652 + MLT1D LTR MaLR 185 505 0 631 178 0 0 chr4 132411125 132411232 -51877430 + AluJb SINE Alu 195 301 -11 337 128 0 53 chr4 132411421 132411515 -51877147 + (GGGAA)n Simple_repeat Simple_repeat 2 90 0 2331 56 3 10 chr4 132411729 132412033 -51876629 + AluY SINE Alu 1 302 -9 30 27 0 0 chr4 132413289 132413326 -51875336 + AT_rich Low_complexity Low_complexity 1 37 0 445 302 135 36 chr4 132415285 132415729 -51872933 - L1ME3A LINE L1 -222 5948 5461 250 304 123 37 chr4 132415900 132416364 -51872298 - L1ME3A LINE L1 -1125 5021 4518 339 266 0 0 chr4 132416392 132416486 -51872176 - L1ME3A LINE L1 -234 5936 5843 310 389 63 19 chr4 132416501 132416879 -51871783 - L1ME3A LINE L1 -1795 4351 3957 565 329 32 28 chr4 132416938 132417433 -51871229 - L1ME3A LINE L1 -2281 3865 3369 497 265 73 0 chr4 132417523 132417674 -51870988 + MER58B DNA MER1_type 164 325 -16 307 278 147 46 chr4 132417685 132417991 -51870671 - L1ME3A LINE L1 -2817 3329 2993 34 0 0 0 chr4 132418013 132418047 -51870615 + AT_rich Low_complexity Low_complexity 1 34 0 271 155 14 14 chr4 132419016 132419087 -51869575 + GA-rich Low_complexity Low_complexity 2 72 0 332 155 14 0 chr4 132419093 132419164 -51869498 + (CA)n Simple_repeat Simple_repeat 1 72 0 10327 66 1 21 chr4 132419165 132420760 -51867902 - SST1 Satellite centromeric 0 1563 1 208 174 14 14 chr4 132421498 132421567 -51867095 + GA-rich Low_complexity Low_complexity 2 70 0 249 163 0 0 chr4 132421573 132421622 -51867040 + (CA)n Simple_repeat Simple_repeat 1 49 0 2097 104 0 9 chr4 132421639 132421965 -51866697 - SST1 Satellite centromeric 0 1563 1241 2773 195 24 3 chr4 132421965 132422739 -51865923 + L1PB4 LINE L1 5008 5791 -365 189 0 0 0 chr4 132422739 132422760 -51865902 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 243 125 42 0 chr4 132422759 132422831 -51865831 + (TA)n Simple_repeat Simple_repeat 1 75 0 1910 159 11 50 chr4 132422839 132423022 -51865640 + L1PB4 LINE L1 5795 5957 -199 1957 152 3 0 chr4 132423022 132423324 -51865338 + AluSx SINE Alu 1 303 -9 1910 159 11 50 chr4 132423324 132423517 -51865145 + L1PB4 LINE L1 5957 6156 0 273 224 48 32 chr4 132423517 132423642 -51865020 - L1ME3A LINE L1 -3271 2875 2749 21 0 0 0 chr4 132424081 132424102 -51864560 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 132424573 132424595 -51864067 + AT_rich Low_complexity Low_complexity 1 22 0 25 65 0 0 chr4 132424636 132424682 -51863980 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr4 132425346 132425375 -51863287 + AT_rich Low_complexity Low_complexity 1 29 0 1359 175 0 0 chr4 132425379 132425613 -51863049 - L1PB3 LINE L1 -9 6145 5912 210 220 68 0 chr4 132426006 132426065 -51862597 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 21 36 0 0 chr4 132426116 132426144 -51862518 + AT_rich Low_complexity Low_complexity 1 28 0 35 41 0 0 chr4 132426407 132426456 -51862206 + AT_rich Low_complexity Low_complexity 1 49 0 1413 289 76 10 chr4 132427317 132427801 -51860861 - LTR40a LTR ERVL -1 518 3 25 75 0 0 chr4 132427910 132427963 -51860699 + AT_rich Low_complexity Low_complexity 1 53 0 1390 185 21 4 chr4 132428102 132428620 -51860042 - L1MC1 LINE L1 -6 6327 5746 2781 22 0 0 chr4 132428790 132429105 -51859557 + AluYb8 SINE Alu 1 315 -3 1864 158 0 10 chr4 132429565 132429856 -51858806 + AluSx SINE Alu 12 299 -13 21 36 0 0 chr4 132429935 132429963 -51858699 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr4 132430011 132430040 -51858622 + AT_rich Low_complexity Low_complexity 1 29 0 265 318 36 9 chr4 132430414 132430524 -51858138 + L2 LINE L2 3201 3313 0 456 321 42 21 chr4 132430656 132430896 -51857766 + MIR SINE MIR 15 259 -3 307 194 15 30 chr4 132432628 132432644 -51856018 + MER3 DNA MER1_type 36 50 -159 553 191 8 46 chr4 132432644 132432775 -51855887 - MER3 DNA MER1_type -2 207 82 2960 150 33 17 chr4 132432984 132433559 -51855103 + LTR60 LTR ERV1 1 584 -2 1366 251 93 67 chr4 132434116 132434578 -51854084 + MLT2B1 LTR ERVL 47 520 0 377 338 119 54 chr4 132434920 132435788 -51852874 + L2 LINE L2 2306 3241 -72 21 0 0 0 chr4 132436634 132436655 -51852007 + AT_rich Low_complexity Low_complexity 1 21 0 232 247 0 0 chr4 132437501 132437549 -51851113 + MER91 DNA MER1_type 1 42 -98 3539 137 38 7 chr4 132438054 132438660 -51850002 - L1PB2 LINE L1 0 6151 5527 21 71 0 0 chr4 132438789 132438831 -51849831 + AT_rich Low_complexity Low_complexity 1 42 0 3171 99 32 2 chr4 132438929 132439403 -51849259 + L1PA10 LINE L1 5681 6168 0 393 280 192 38 chr4 132439600 132440042 -51848620 - MLT1G1 LTR MaLR -37 558 12 22 35 0 0 chr4 132442234 132442263 -51846399 + AT_rich Low_complexity Low_complexity 1 29 0 21 71 0 0 chr4 132442656 132442698 -51845964 + AT_rich Low_complexity Low_complexity 1 42 0 201 121 0 0 chr4 132443361 132443394 -51845268 + (TG)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr4 132443612 132443633 -51845029 + AT_rich Low_complexity Low_complexity 1 21 0 1432 191 46 52 chr4 132443715 132444082 -51844580 + MLT1A1 LTR MaLR 1 365 0 1634 177 0 3 chr4 132444220 132444532 -51844130 - AluJb SINE Alu 0 311 1 2229 89 0 0 chr4 132444577 132444870 -51843792 + AluY SINE Alu 1 293 -18 815 182 21 21 chr4 132445107 132445299 -51843363 + L1MA8 LINE L1 6094 6285 -6 280 314 57 21 chr4 132445505 132445645 -51843017 - L2 LINE L2 -6 3307 3163 195 311 222 12 chr4 132445664 132445831 -51842831 - L2 LINE L2 0 3313 3112 213 315 185 0 chr4 132445959 132446051 -51842611 - L2 LINE L2 -313 3000 2892 870 250 17 30 chr4 132446237 132446469 -51842193 + MIR SINE MIR 34 262 0 675 207 74 85 chr4 132446611 132446877 -51841785 - MLT1A2 LTR MaLR -24 350 127 1168 183 60 110 chr4 132446877 132447259 -51841403 - MLT1A1 LTR MaLR -2 363 1 675 207 74 85 chr4 132447259 132447385 -51841277 - MLT1A2 LTR MaLR -247 127 1 1231 213 26 55 chr4 132448185 132448495 -51840167 + AluJo SINE Alu 1 301 -1 23 54 0 0 chr4 132448590 132448627 -51840035 + AT_rich Low_complexity Low_complexity 1 37 0 3509 67 2 2 chr4 132449162 132449623 -51839039 + L1PA8 LINE L1 5698 6158 -14 47 33 0 0 chr4 132449623 132449684 -51838978 + AT_rich Low_complexity Low_complexity 1 61 0 252 294 92 8 chr4 132449692 132449811 -51838851 - MIR SINE MIR -100 162 34 200 35 35 0 chr4 132450416 132450445 -51838217 + (TA)n Simple_repeat Simple_repeat 1 30 0 27 29 0 0 chr4 132450908 132450942 -51837720 + AT_rich Low_complexity Low_complexity 1 34 0 1828 205 44 44 chr4 132451038 132451565 -51837097 - L1MC2 LINE L1 -1 6343 5817 323 270 190 41 chr4 132452595 132452958 -51835704 - L1M4 LINE L1 -2579 3567 3151 260 296 12 0 chr4 132453170 132453251 -51835411 + MER63 DNA MER1_type 38 745 -91 24 53 0 0 chr4 132453397 132453435 -51835227 + AT_rich Low_complexity Low_complexity 1 38 0 1708 210 14 17 chr4 132453605 132453967 -51834695 + MLT1A1 LTR MaLR 5 365 0 2555 58 0 0 chr4 132454508 132454819 -51833843 - AluY SINE Alu 0 311 1 438 185 43 0 chr4 132454827 132454938 -51833724 + MLT1F1 LTR MaLR 33 130 -437 228 340 238 0 chr4 132454962 132455168 -51833494 + MLT1F1 LTR MaLR 251 505 -85 1848 119 37 31 chr4 132455272 132455566 -51833096 + AluSg SINE Alu 6 301 -9 39 68 0 0 chr4 132455851 132455925 -51832737 + AT_rich Low_complexity Low_complexity 1 74 0 330 319 122 41 chr4 132455970 132456362 -51832300 - HAL1b LINE L1 -478 870 447 424 140 47 0 chr4 132456780 132456887 -51831775 + (TA)n Simple_repeat Simple_repeat 1 112 0 25 31 0 0 chr4 132456969 132457001 -51831661 + AT_rich Low_complexity Low_complexity 1 32 0 25 51 0 0 chr4 132457031 132457070 -51831592 + AT_rich Low_complexity Low_complexity 1 39 0 202 286 26 104 chr4 132457769 132457923 -51830739 + MIR SINE MIR 107 248 -14 2123 104 9 25 chr4 132457975 132458292 -51830370 - AluSx SINE Alu 0 312 1 71 24 0 0 chr4 132460243 132460328 -51828334 + AT_rich Low_complexity Low_complexity 1 85 0 784 279 106 54 chr4 132461413 132462008 -51826654 + L1M4 LINE L1 2671 3296 -2850 1095 189 5 0 chr4 132462085 132462281 -51826381 + L1MB3 LINE L1 5628 5824 -347 1411 73 6 0 chr4 132462284 132462462 -51826200 + AluSc SINE Alu 1 179 -130 446 156 13 0 chr4 132462472 132462549 -51826113 + AluJ/FRAM SINE Alu 232 309 -3 1699 175 11 32 chr4 132462553 132462931 -51825731 + L1MB3 LINE L1 5814 6183 0 2409 59 0 0 chr4 132463627 132463917 -51824745 - AluY SINE Alu -6 305 16 201 267 0 17 chr4 132463935 132463995 -51824667 + MIR SINE MIR 114 172 -90 228 196 10 62 chr4 132463995 132464092 -51824570 + (TATAA)n Simple_repeat Simple_repeat 2 93 0 59 65 0 0 chr4 132464213 132464321 -51824341 + AT_rich Low_complexity Low_complexity 1 108 0 459 324 154 4 chr4 132464752 132464999 -51823663 - L2 LINE L2 -507 2807 2524 436 245 123 9 chr4 132465873 132465979 -51822683 - FLAM_A SINE Alu -12 121 4 21 0 0 0 chr4 132467378 132467399 -51821263 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr4 132467745 132467781 -51820881 + AT_rich Low_complexity Low_complexity 1 36 0 252 130 0 0 chr4 132468543 132468589 -51820073 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 212 307 164 21 chr4 132469540 132469680 -51818982 + MIR SINE MIR 74 233 -29 27 49 0 0 chr4 132469955 132469996 -51818666 + AT_rich Low_complexity Low_complexity 1 41 0 32 0 0 0 chr4 132470345 132470377 -51818285 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 132470977 132470998 -51817664 + AT_rich Low_complexity Low_complexity 1 21 0 300 328 16 0 chr4 132471088 132471210 -51817452 - L1MCa LINE L1 -6275 151 28 1237 289 57 43 chr4 132471211 132471703 -51816959 + MLT1E LTR MaLR 89 587 -6 26 30 0 0 chr4 132472238 132472271 -51816391 + AT_rich Low_complexity Low_complexity 1 33 0 183 129 0 0 chr4 132472349 132472380 -51816282 + (TCTCCC)n Simple_repeat Simple_repeat 6 36 0 414 297 70 72 chr4 132472549 132473048 -51815614 + L1M4 LINE L1 4081 4578 -1568 770 211 12 18 chr4 132473396 132473562 -51815100 + FAM SINE Alu 3 167 -8 252 59 0 0 chr4 132473962 132473996 -51814666 + (CA)n Simple_repeat Simple_repeat 1 34 0 486 367 67 0 chr4 132474041 132474340 -51814322 - L2 LINE L2 -252 3061 2734 23 0 0 0 chr4 132474430 132474453 -51814209 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr4 132474572 132474602 -51814060 + AT_rich Low_complexity Low_complexity 1 30 0 183 259 93 19 chr4 132474734 132474788 -51813874 + L2 LINE L2 3199 3256 -16 715 234 0 0 chr4 132475175 132475316 -51813346 - FRAM SINE Alu -10 166 26 1921 194 13 38 chr4 132475710 132475781 -51812881 - L1 LINE L1 -1607 4539 4468 2252 115 0 0 chr4 132475781 132476094 -51812568 - AluSq SINE Alu 0 313 1 1921 194 13 38 chr4 132476094 132476496 -51812166 - L1 LINE L1 -1678 4468 4078 1097 287 62 12 chr4 132477715 132477829 -51810833 - L1ME3A LINE L1 0 6170 6063 207 0 0 0 chr4 132477829 132477852 -51810810 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1097 287 62 12 chr4 132477852 132478158 -51810504 - L1ME3A LINE L1 -107 6063 5729 403 264 9 18 chr4 132478265 132478375 -51810287 - MER90 LTR ERV1 0 614 506 1382 148 0 5 chr4 132478776 132478992 -51809670 - AluSx SINE Alu -96 216 2 32 0 0 0 chr4 132479093 132479125 -51809537 + AT_rich Low_complexity Low_complexity 1 32 0 3363 189 55 14 chr4 132479994 132480723 -51807939 + L1MB1 LINE L1 5410 6168 0 654 309 123 14 chr4 132480872 132481157 -51807505 + L2 LINE L2 2492 2807 -507 244 278 74 9 chr4 132481218 132481326 -51807336 - MIR SINE MIR -108 154 40 182 237 0 0 chr4 132481407 132481445 -51807217 + L2 LINE L2 1967 2004 -1310 2028 121 7 0 chr4 132483856 132484146 -51804516 + AluSx SINE Alu 12 303 -9 22 0 0 0 chr4 132484444 132484466 -51804196 + AT_rich Low_complexity Low_complexity 1 22 0 497 322 101 26 chr4 132484723 132484950 -51803712 - MIR SINE MIR -15 247 4 2057 112 4 0 chr4 132485038 132485361 -51803301 + AluSg SINE Alu 3 326 0 881 268 87 29 chr4 132486337 132486684 -51801978 + MLT1D LTR MaLR 1 367 -138 298 353 184 0 chr4 132487050 132487240 -51801422 + MIR SINE MIR 12 236 -26 344 297 44 82 chr4 132488600 132488893 -51799769 - L2 LINE L2 -434 2880 2599 1648 184 19 16 chr4 132489070 132489385 -51799277 + MSTA LTR MaLR 1 316 -112 1076 220 51 36 chr4 132489385 132489894 -51798768 + pTR5 LTR ERV1 743 1341 -1097 3377 117 155 108 chr4 132489929 132490714 -51797948 + LTR12 LTR ERV1 5 826 0 731 117 45 0 chr4 132490714 132490825 -51797837 + MSTA LTR MaLR 313 428 0 1990 98 77 0 chr4 132490931 132491218 -51797444 - AluY SINE Alu -2 309 1 2233 76 3 3 chr4 132491961 132492265 -51796397 - AluY SINE Alu -7 304 1 25 65 0 0 chr4 132492847 132492893 -51795769 + AT_rich Low_complexity Low_complexity 1 46 0 360 290 129 40 chr4 132494743 132494967 -51793695 - L1ME3A LINE L1 -12 6158 5915 1899 207 24 19 chr4 132494970 132495391 -51793271 + MSTC LTR MaLR 2 424 -4 257 291 83 27 chr4 132495447 132495786 -51792876 - L1MDb LINE L1 -4554 1773 1120 2077 177 16 40 chr4 132497317 132497741 -51790921 - MLT2D LTR ERVL 0 414 1 1235 229 24 42 chr4 132498204 132498541 -51790121 - MER82 DNA MER2_type -13 640 310 22 0 0 0 chr4 132498599 132498621 -51790041 + AT_rich Low_complexity Low_complexity 1 22 0 2212 216 56 32 chr4 132498626 132498666 -51789996 - MLT2B1 LTR ERVL 0 520 482 369 0 0 0 chr4 132498666 132498707 -51789955 + (TG)n Simple_repeat Simple_repeat 2 42 0 2212 216 56 32 chr4 132498707 132499170 -51789492 - MLT2B1 LTR ERVL -38 482 5 278 372 68 24 chr4 132499268 132499475 -51789187 - LTR16A LTR ERVL -82 368 153 193 284 95 0 chr4 132500064 132500138 -51788524 - MIR SINE MIR -97 165 85 21 36 0 0 chr4 132501509 132501537 -51787125 + AT_rich Low_complexity Low_complexity 1 28 0 780 146 0 7 chr4 132501682 132501819 -51786843 + L1MA3 LINE L1 6170 6305 0 21 0 0 0 chr4 132501946 132501967 -51786695 + AT_rich Low_complexity Low_complexity 1 21 0 232 257 27 0 chr4 132503359 132503433 -51785229 + (CATA)n Simple_repeat Simple_repeat 4 79 0 36 0 0 0 chr4 132503552 132503588 -51785074 + AT_rich Low_complexity Low_complexity 1 36 0 519 103 0 0 chr4 132503588 132503656 -51785006 - AluS SINE Alu -222 91 24 2267 111 0 0 chr4 132503782 132504088 -51784574 - AluSx SINE Alu -4 308 3 1839 180 3 0 chr4 132504537 132504831 -51783831 + MLT2B2 LTR ERVL 1 295 -220 295 136 0 34 chr4 132504849 132504908 -51783754 + MLT2B2 LTR ERVL 464 520 0 22 0 0 0 chr4 132506846 132506868 -51781794 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr4 132507364 132507390 -51781272 + AT_rich Low_complexity Low_complexity 1 26 0 219 332 110 73 chr4 132507982 132508540 -51780122 - L2 LINE L2 -276 3037 2456 431 286 125 27 chr4 132508684 132508908 -51779754 + MER20B DNA MER1_type 239 484 -299 25 31 0 0 chr4 132509088 132509120 -51779542 + AT_rich Low_complexity Low_complexity 1 32 0 425 291 117 27 chr4 132509272 132509571 -51779091 - L1ME LINE L1 -5070 1000 675 235 0 57 0 chr4 132509635 132509670 -51778992 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 1242 181 3 107 chr4 132509674 132509983 -51778679 - AluJo SINE Alu -30 282 6 351 78 0 0 chr4 132510635 132510686 -51777976 + (T)n Simple_repeat Simple_repeat 1 51 0 1844 153 140 13 chr4 132510733 132511111 -51777551 + MSTA LTR MaLR 1 426 -2 8741 143 38 35 chr4 132511115 132512688 -51775974 + MSTA-int LTR MaLR 3 1580 0 1420 203 150 19 chr4 132512691 132513065 -51775597 + MSTB LTR MaLR 4 426 0 1570 235 21 75 chr4 132513942 132514461 -51774201 + MLT1D LTR MaLR 15 505 0 23 78 0 0 chr4 132514613 132514664 -51773998 + AT_rich Low_complexity Low_complexity 1 51 0 277 341 119 0 chr4 132515569 132515695 -51772967 - L2 LINE L2 -2 3311 3171 294 73 0 0 chr4 132515736 132515777 -51772885 + (CA)n Simple_repeat Simple_repeat 2 42 0 198 71 0 0 chr4 132515893 132515921 -51772741 + (CA)n Simple_repeat Simple_repeat 1 28 0 28 29 0 0 chr4 132516007 132516042 -51772620 + AT_rich Low_complexity Low_complexity 1 35 0 1706 179 24 50 chr4 132516126 132516506 -51772156 + L1MA10 LINE L1 5963 6332 -2 2042 148 7 0 chr4 132516818 132517123 -51771539 - AluSx SINE Alu -5 307 1 2237 96 3 0 chr4 132518358 132518651 -51770011 - AluSp SINE Alu -19 294 1 34 84 0 0 chr4 132519168 132519251 -51769411 + AT_rich Low_complexity Low_complexity 1 83 0 30 27 0 0 chr4 132520083 132520120 -51768542 + AT_rich Low_complexity Low_complexity 1 37 0 1247 310 67 72 chr4 132520357 132521615 -51767047 + HERV16 LTR ERVL 1665 3012 -1984 296 388 12 12 chr4 132521768 132522023 -51766639 + HERV16 LTR ERVL 3239 3493 -2161 371 303 31 6 chr4 132522066 132522228 -51766434 - L1MEc LINE L1 -4527 1869 1704 * 1481 249 116 22 chr4 132522225 132522775 -51765887 - L1MEc LINE L1 -5758 638 37 233 174 102 20 chr4 132522847 132522945 -51765717 - L1 LINE L1 -1596 4550 4445 233 57 29 0 chr4 132524008 132524043 -51764619 + (TC)n Simple_repeat Simple_repeat 1 36 0 241 299 107 28 chr4 132524262 132524656 -51764006 - L1MC5 LINE L1 -32 7929 7505 24 67 0 0 chr4 132524729 132524774 -51763888 + AT_rich Low_complexity Low_complexity 1 45 0 219 373 118 0 chr4 132525194 132525304 -51763358 + L2 LINE L2 3145 3267 -5 295 356 89 7 chr4 132525462 132525608 -51763054 + L2 LINE L2 2712 2869 -445 323 366 88 35 chr4 132525673 132526012 -51762650 + L2 LINE L2 2955 3311 -2 1651 198 3 0 chr4 132526218 132526516 -51762146 + AluJb SINE Alu 3 301 -11 1615 214 37 3 chr4 132526527 132526854 -51761808 - MER2 DNA MER2_type -6 339 2 1551 232 86 73 chr4 132527032 132527579 -51761083 - MLT2B3 LTR ERVL 0 554 1 19955 108 28 7 chr4 132527579 132530035 -51758627 - HERVL-B3 LTR ERVL 0 5654 3130 2364 128 25 3 chr4 132530035 132530402 -51758260 - THE1C LTR MaLR 0 375 1 19955 108 28 7 chr4 132530402 132530812 -51757850 - HERVL-B3 LTR ERVL -2524 3130 2730 2454 116 14 3 chr4 132530812 132531182 -51757480 + THE1C LTR MaLR 2 375 0 9461 129 35 41 chr4 132531182 132532766 -51755896 + THE1C-int LTR MaLR 1 1574 -6 2508 107 30 3 chr4 132532773 132533136 -51755526 + THE1C LTR MaLR 1 373 -2 790 107 0 0 chr4 132533137 132533249 -51755413 - HERVL-B3 LTR ERVL -2918 2736 2625 4294 77 40 5 chr4 132533249 132533824 -51754838 - LTR17 LTR ERV1 0 780 186 22 80 0 0 chr4 132533969 132534019 -51754643 + AT_rich Low_complexity Low_complexity 1 50 0 2237 104 0 0 chr4 132534297 132534596 -51754066 - AluY SINE Alu -12 299 1 1791 331 25 28 chr4 132534942 132535627 -51753035 + L1PA13 LINE L1 1 683 -6104 229 353 100 27 chr4 132535836 132535986 -51752676 + MIR SINE MIR 12 172 -90 19741 131 8 14 chr4 132536268 132540359 -51748303 - L1PA8A LINE L1 -28 6103 2037 1157 21 29 0 chr4 132540462 132540602 -51748060 - LTR17 LTR ERV1 -636 144 1 18212 118 8 3 chr4 132540602 132543216 -51745446 - HERVL-A2 LTR ERVL -3026 2628 1 1634 210 57 33 chr4 132543216 132543765 -51744897 - MLT2A2 LTR ERVL 0 554 1 696 213 26 70 chr4 132545614 132545844 -51742818 + L1MA9 LINE L1 6055 6274 -38 21 71 0 0 chr4 132545850 132545892 -51742770 + AT_rich Low_complexity Low_complexity 1 42 0 700 259 153 87 chr4 132546446 132546974 -51741688 - MLT1F1 LTR MaLR 0 567 7 611 303 43 20 chr4 132546979 132547329 -51741333 + Charlie4a DNA MER1_type 131 488 -20 320 269 84 53 chr4 132548070 132548297 -51740365 - L1ME LINE L1 -370 5751 5518 254 188 125 0 chr4 132548395 132548475 -51740187 - L1MC4 LINE L1 -1340 6702 6613 362 319 71 33 chr4 132548574 132548784 -51739878 - L1ME LINE L1 -1047 5099 4882 316 297 0 0 chr4 132549034 132549108 -51739554 + MER5A DNA MER1_type 33 106 -83 21 0 0 0 chr4 132550428 132550449 -51738213 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chr4 132551009 132551040 -51737622 + AT_rich Low_complexity Low_complexity 1 31 0 4324 160 52 2 chr4 132551040 132551845 -51736817 - L1MA5 LINE L1 -8 6292 5448 918 234 75 23 chr4 132551881 132552146 -51736516 - L1MD3 LINE L1 -924 7071 6793 10667 189 7 9 chr4 132552177 132553795 -51734867 - L1PB1 LINE L1 -7 6860 5239 2067 140 48 31 chr4 132553795 132554153 -51734509 + THE1B LTR MaLR 1 364 0 10667 189 7 9 chr4 132554153 132555834 -51732828 - L1PB1 LINE L1 -1628 5239 3565 2068 161 40 14 chr4 132555848 132556201 -51732461 - THE1B LTR MaLR 0 364 3 10102 138 20 3 chr4 132556209 132557755 -51730907 - THE1B-int LTR MaLR -7 1573 1 2233 145 28 14 chr4 132557755 132558114 -51730548 - THE1B LTR MaLR 0 364 1 3107 186 55 22 chr4 132558117 132559340 -51729322 - L1PB1 LINE L1 -3310 3552 2286 1881 194 11 6 chr4 132559440 132559805 -51728857 - L1PB1 LINE L1 -5735 1128 762 750 141 31 0 chr4 132559805 132559933 -51728729 - L1PB1 LINE L1 -6731 132 1 575 177 8 15 chr4 132560049 132560179 -51728483 + L1 LINE L1 3648 3776 -2370 237 186 43 14 chr4 132560339 132560409 -51728253 + (TA)n Simple_repeat Simple_repeat 2 73 0 986 200 0 72 chr4 132560416 132560651 -51728011 - AluJo SINE Alu -94 218 1 582 252 55 32 chr4 132560651 132560960 -51727702 - L1M4 LINE L1 -1492 5072 4757 * 1745 275 14 15 chr4 132560935 132561597 -51727065 - L1MEc LINE L1 -3311 3253 2624 406 205 0 122 chr4 132561639 132561795 -51726867 - L1MEc LINE L1 -5389 656 520 730 333 65 12 chr4 132561826 132562173 -51726489 - L1MEc LINE L1 -5621 424 52 1732 189 7 3 chr4 132562173 132562470 -51726192 - AluSx SINE Alu -12 300 3 730 333 65 12 chr4 132562470 132562522 -51726140 - L1MEc LINE L1 -5993 52 4 1331 65 0 6 chr4 132562565 132562735 -51725927 + LTR30 LTR ERV1 1 169 -553 866 90 14 35 chr4 132562835 132562979 -51725683 + HERVH LTR ERV1 7573 7713 0 2750 63 95 5 chr4 132562979 132563390 -51725272 + LTR7 LTR ERV1 1 448 -2 560 210 93 78 chr4 132563425 132563656 -51725006 - LTR12 LTR ERV1 -250 464 197 1894 231 62 62 chr4 132563948 132564615 -51724047 + LTR24-int LTR ERV1 769 2654 -3677 635 271 127 16 chr4 132564618 132564862 -51723800 + MER34C LTR ERV1 160 430 -155 319 207 0 59 chr4 132564862 132564983 -51723679 + LTR24-int LTR ERV1 1098 1190 -3681 297 334 21 11 chr4 132565313 132565522 -51723140 + LTR24-int LTR ERV1 4072 4204 -3188 768 329 55 44 chr4 132567504 132568158 -51720504 + LTR24-int LTR ERV1 6014 6674 -448 445 270 9 0 chr4 132568532 132568647 -51720015 + LTR24-int LTR ERV1 5008 5123 0 2329 177 19 48 chr4 132568647 132569128 -51719534 + LTR24 LTR ERV1 1 467 0 264 277 106 7 chr4 132569248 132569389 -51719273 + L1ME3A LINE L1 5769 5923 -247 7698 179 42 26 chr4 132571087 132571809 -51716853 - L1P3 LINE L1 -4429 2032 1323 210 118 0 0 chr4 132571809 132571843 -51716819 + (TTG)n Simple_repeat Simple_repeat 3 36 0 7698 179 42 26 chr4 132571843 132573056 -51715606 - L1P3 LINE L1 -5138 1323 1 23 33 0 0 chr4 132573465 132573495 -51715167 + AT_rich Low_complexity Low_complexity 1 30 0 631 321 53 65 chr4 132574246 132574679 -51713983 + MERVL LTR ERVL 4151 4578 -907 2461 47 0 13 chr4 132574735 132575036 -51713626 + AluY SINE Alu 1 297 -14 25 31 0 0 chr4 132575627 132575659 -51713003 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 132576127 132576148 -51712514 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr4 132576683 132576725 -51711937 + AT_rich Low_complexity Low_complexity 1 42 0 208 345 63 69 chr4 132576878 132577052 -51711610 + MIR SINE MIR 2 174 -88 241 118 71 35 chr4 132578053 132578138 -51710524 + (TATAA)n Simple_repeat Simple_repeat 4 91 0 240 286 97 39 chr4 132578335 132578643 -51710019 - L1M4 LINE L1 -1712 4434 4109 21 0 0 0 chr4 132578685 132578706 -51709956 + AT_rich Low_complexity Low_complexity 1 21 0 1905 190 121 29 chr4 132578714 132578861 -51709801 + MER101B LTR ERV1 1 133 -437 2382 66 0 7 chr4 132578861 132579163 -51709499 - AluY SINE Alu -11 300 1 1905 190 121 29 chr4 132579163 132579537 -51709125 + MER101B LTR ERV1 133 570 0 23 68 0 0 chr4 132579920 132579964 -51708698 + AT_rich Low_complexity Low_complexity 1 44 0 2304 252 68 19 chr4 132580003 132580792 -51707870 + L1MB4 LINE L1 5221 6036 -144 216 200 17 33 chr4 132580810 132580870 -51707792 + (TA)n Simple_repeat Simple_repeat 1 59 0 2768 16 0 0 chr4 132581622 132581935 -51706727 + AluYb8 SINE Alu 1 313 -5 21 0 0 0 chr4 132581937 132581958 -51706704 + AT_rich Low_complexity Low_complexity 1 21 0 11040 157 74 11 chr4 132583010 132585022 -51703640 - Tigger1 DNA MER2_type -1 2417 280 276 279 0 0 chr4 132585263 132585331 -51703331 + (TG)n Simple_repeat Simple_repeat 1 68 0 549 40 0 27 chr4 132585361 132585435 -51703227 - LTR7 LTR ERV1 -2 448 377 21 0 0 0 chr4 132586704 132586725 -51701937 + AT_rich Low_complexity Low_complexity 1 21 0 7239 38 3 1 chr4 132586880 132588522 -51700140 + L1PA5 LINE L1 4501 6143 -11 5148 133 36 6 chr4 132589749 132591197 -51697465 + L1PA16 LINE L1 4685 6157 -9 1278 242 36 13 chr4 132591280 132591582 -51697080 + MER68 LTR ERV1 5 313 -249 7301 238 45 21 chr4 132591609 132591787 -51696875 + L1MC3 LINE L1 5239 5411 -2374 1980 154 0 6 chr4 132591787 132592098 -51696564 + AluSx SINE Alu 1 309 -3 7301 238 45 21 chr4 132592098 132593974 -51694688 + L1MC3 LINE L1 5411 7355 -430 258 147 15 44 chr4 132593968 132594036 -51694626 + L1MC3 LINE L1 7562 7627 -158 * 2543 121 0 11 chr4 132594036 132594415 -51694247 + THE1C LTR MaLR 1 375 0 379 304 127 32 chr4 132594416 132594669 -51693993 + L1ME LINE L1 4029 4305 -1841 527 315 75 37 chr4 132594707 132595135 -51693527 + MLT1H LTR MaLR 106 549 0 548 283 74 54 chr4 132595135 132595687 -51692975 + L1ME LINE L1 4422 4984 -1162 472 278 89 44 chr4 132595882 132596242 -51692420 + L1ME LINE L1 5261 5636 -526 1981 190 40 55 chr4 132596257 132596731 -51691931 + LTR24 LTR ERV1 1 467 0 1631 213 17 28 chr4 132596731 132597249 -51691413 + LTR24-int LTR ERV1 1 652 -4471 234 91 0 0 chr4 132598726 132598759 -51689903 + (GAAAA)n Simple_repeat Simple_repeat 4 36 0 3597 182 15 12 chr4 132598882 132599531 -51689131 - MER50 LTR ERV1 -83 651 1 701 306 26 9 chr4 132600310 132600539 -51688123 + LTR24-int LTR ERV1 1802 2034 -4297 488 101 0 0 chr4 132600540 132600609 -51688053 + LTR7 LTR ERV1 1 69 -381 301 244 12 0 chr4 132600611 132600693 -51687969 + L1MC4 LINE L1 6621 6703 -1339 303 202 71 24 chr4 132600693 132600777 -51687885 - L1MC4 LINE L1 -1341 6701 6614 1367 129 42 4 chr4 132600793 132601034 -51687628 + L1MC1 LINE L1 5922 6171 -162 10785 208 24 105 chr4 132601134 132602522 -51686140 + L1PA15 LINE L1 1445 2944 -3872 1572 203 29 0 chr4 132602522 132602803 -51685859 + AluJb SINE Alu 11 299 -13 10785 208 24 105 chr4 132602803 132604129 -51684533 + L1PA15 LINE L1 2944 4376 -2440 2226 166 57 12 chr4 132604129 132604532 -51684130 + MSTA LTR MaLR 3 423 -5 10785 208 24 105 chr4 132604532 132607024 -51681638 + L1PA15 LINE L1 4376 6812 -4 387 224 83 77 chr4 132607744 132607900 -51680762 + L1MDa LINE L1 3 159 -6381 1602 247 42 15 chr4 132607927 132608515 -51680147 + L1MDa LINE L1 935 1538 -5002 208 139 0 0 chr4 132609111 132609147 -51679515 + (T)n Simple_repeat Simple_repeat 1 36 0 3152 176 23 13 chr4 132609526 132610129 -51678533 + Tigger2 DNA MER2_type 1 609 -2109 646 121 153 8 chr4 132610129 132610253 -51678409 - MER61A LTR ERV1 0 343 202 20601 83 8 1 chr4 132610259 132614122 -51674540 - HERVL-A1 LTR ERVL -1690 3964 1 277 102 17 34 chr4 132614122 132614181 -51674481 - MLT2A1 LTR ERVL 0 453 396 223 200 12 12 chr4 132614181 132614261 -51674401 + (TA)n Simple_repeat Simple_repeat 1 80 0 2516 117 30 8 chr4 132614286 132614688 -51673974 - MLT2A1 LTR ERVL -31 413 3 963 116 27 7 chr4 132614713 132614860 -51673802 + Tigger2 DNA MER2_type 608 757 -1961 1284 185 28 0 chr4 132614911 132615160 -51673502 + Tigger2 DNA MER2_type 2452 2707 -11 1885 147 54 25 chr4 132615197 132615551 -51673111 + THE1B LTR MaLR 1 364 0 25 0 0 0 chr4 132615750 132615775 -51672887 + AT_rich Low_complexity Low_complexity 1 25 0 30 45 0 0 chr4 132615821 132615865 -51672797 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr4 132616349 132616372 -51672290 + AT_rich Low_complexity Low_complexity 1 23 0 28 71 0 0 chr4 132616422 132616478 -51672184 + AT_rich Low_complexity Low_complexity 1 56 0 25 0 0 0 chr4 132617500 132617525 -51671137 + AT_rich Low_complexity Low_complexity 1 25 0 787 109 22 141 chr4 132617612 132617796 -51670866 - MER67D LTR ERV1 -321 193 32 2506 87 102 17 chr4 132617909 132618322 -51670340 + LTR7 LTR ERV1 1 448 -2 19838 96 64 18 chr4 132618324 132621469 -51667193 + HERVH LTR ERV1 1 3290 -4423 3274 113 6 6 chr4 132621459 132621961 -51666701 + HERVH LTR ERV1 3492 3993 -3720 * 3968 153 15 5 chr4 132621963 132622618 -51666044 + HERVH LTR ERV1 4488 5149 -2564 1330 148 19 0 chr4 132622619 132622835 -51665827 + HERVH LTR ERV1 5600 5819 -1894 288 159 0 0 chr4 132622835 132622879 -51665783 + HERVH LTR ERV1 7324 7367 -346 4015 15 4 0 chr4 132623009 132623474 -51665188 + L1PA2 LINE L1 5684 6150 -5 747 239 63 19 chr4 132624693 132624898 -51663764 - MLT1C LTR MaLR 0 467 254 307 301 0 0 chr4 132625780 132625853 -51662809 + polypurine Low_complexity Low_complexity 1 73 0 21 57 0 0 chr4 132627128 132627163 -51661499 + AT_rich Low_complexity Low_complexity 1 35 0 28 86 0 0 chr4 132627401 132627471 -51661191 + AT_rich Low_complexity Low_complexity 1 70 0 272 132 26 26 chr4 132627594 132627670 -51660992 + (TA)n Simple_repeat Simple_repeat 1 76 0 22 0 0 0 chr4 132628142 132628164 -51660498 + AT_rich Low_complexity Low_complexity 1 22 0 575 309 43 13 chr4 132628339 132628569 -51660093 + MLT1J LTR MaLR 12 248 -263 386 183 0 0 chr4 132628677 132628748 -51659914 + MLT1J LTR MaLR 423 493 -18 294 29 0 0 chr4 132628852 132628887 -51659775 + (TA)n Simple_repeat Simple_repeat 2 36 0 572 303 88 66 chr4 132628956 132629172 -51659490 - L1M4 LINE L1 -3347 2799 2589 1868 149 0 22 chr4 132629172 132629487 -51659175 - AluJb SINE Alu -1 311 4 572 303 88 66 chr4 132629487 132629920 -51658742 - L1M4 LINE L1 -3557 2589 2136 498 129 0 0 chr4 132630305 132630375 -51658287 - Alu SINE Alu -18 292 223 1878 142 0 4 chr4 132630375 132630656 -51658006 - AluSx SINE Alu -29 283 4 411 56 0 0 chr4 132630708 132630762 -51657900 + (CA)n Simple_repeat Simple_repeat 2 55 0 873 257 5 45 chr4 132631189 132631411 -51657251 - MER58A DNA MER1_type -11 213 1 2168 132 0 6 chr4 132632207 132632518 -51656144 - AluSg SINE Alu -1 309 1 2787 3 0 7 chr4 132632523 132632833 -51655829 - AluYa5 SINE Alu 0 311 4 22 80 0 0 chr4 132633724 132633774 -51654888 + AT_rich Low_complexity Low_complexity 1 50 0 27 92 0 0 chr4 132634730 132634806 -51653856 + AT_rich Low_complexity Low_complexity 1 76 0 200 200 13 0 chr4 132635199 132635274 -51653388 + (TA)n Simple_repeat Simple_repeat 1 76 0 24 32 0 0 chr4 132635302 132635333 -51653329 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr4 132635930 132635954 -51652708 + AT_rich Low_complexity Low_complexity 1 24 0 42 44 4 0 chr4 132638745 132638850 -51649812 + AT_rich Low_complexity Low_complexity 1 70 0 2180 99 3 0 chr4 132639985 132640287 -51648375 + AluSx SINE Alu 1 303 -9 22 35 0 0 chr4 132640460 132640489 -51648173 + AT_rich Low_complexity Low_complexity 1 29 0 236 357 0 0 chr4 132641310 132641439 -51647223 + (TA)n Simple_repeat Simple_repeat 2 130 0 26 50 0 0 chr4 132641522 132641562 -51647100 + AT_rich Low_complexity Low_complexity 1 40 0 23 33 0 0 chr4 132641659 132641689 -51646973 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chr4 132643584 132643606 -51645056 + (T)n Simple_repeat Simple_repeat 1 22 0 27 29 0 0 chr4 132643950 132643984 -51644678 + AT_rich Low_complexity Low_complexity 1 34 0 181 282 104 80 chr4 132644561 132644724 -51643938 - L2 LINE L2 -6 3307 3141 24 53 0 0 chr4 132644788 132644826 -51643836 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr4 132645554 132645582 -51643080 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 132645696 132645724 -51642938 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr4 132646449 132646478 -51642184 + AT_rich Low_complexity Low_complexity 1 29 0 9512 32 7 2 chr4 132646478 132648401 -51640261 - L1PA4 LINE L1 -7 6148 4220 1353 32 0 0 chr4 132648401 132648559 -51640103 + L1PA4 LINE L1 4086 4243 -1903 785 357 88 35 chr4 132648921 132649445 -51639217 - L2 LINE L2 -19 3294 2734 461 188 231 0 chr4 132649549 132649709 -51638953 - MER33 DNA MER1_type 0 363 167 572 229 0 0 chr4 132650186 132650304 -51638358 - MER33 DNA MER1_type -202 122 5 22 35 0 0 chr4 132651271 132651300 -51637362 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 132651394 132651415 -51637247 + AT_rich Low_complexity Low_complexity 1 21 0 538 283 38 43 chr4 132652053 132652237 -51636425 + MER5A DNA MER1_type 7 189 0 288 352 93 28 chr4 132653775 132653991 -51634671 + HERVL-F LTR ERVL 2019 2248 -3406 610 370 42 30 chr4 132654116 132654687 -51633975 + HERVL-F LTR ERVL 2461 3038 -2726 382 221 0 0 chr4 132654708 132654785 -51633877 + MLT2B1 LTR ERVL 5 81 -439 205 192 39 19 chr4 132654799 132654851 -51633811 - MIR SINE MIR -93 169 117 35 54 0 0 chr4 132655085 132655141 -51633521 + AT_rich Low_complexity Low_complexity 1 56 0 1106 148 6 11 chr4 132655176 132655352 -51633310 + AluJo SINE Alu 84 258 -54 189 107 0 0 chr4 132655372 132655400 -51633262 + (CA)n Simple_repeat Simple_repeat 1 28 0 288 294 36 49 chr4 132655419 132655725 -51632937 + HAL1 LINE L1 2021 2322 -185 2128 295 76 86 chr4 132655862 132656421 -51632241 + HERVL-F LTR ERVL 4205 4768 -996 2320 106 0 0 chr4 132656421 132656733 -51631929 - AluSx SINE Alu 0 312 1 2128 295 76 86 chr4 132656733 132657747 -51630915 + HERVL-F LTR ERVL 4768 5763 -1 1123 267 42 98 chr4 132658026 132658651 -51630011 + MLT2F LTR ERVL 3 592 -71 510 344 48 5 chr4 132658668 132658854 -51629808 + L2 LINE L2 2570 2763 -551 1604 183 90 6 chr4 132659146 132659479 -51629183 - MER46B DNA MER2_type 0 236 1 1359 221 62 60 chr4 132659642 132660108 -51628554 - MLT1C LTR MaLR 0 467 1 1010 321 63 25 chr4 132660234 132660629 -51628033 + LTR16A LTR ERVL 26 435 -15 1276 310 50 40 chr4 132660673 132660911 -51627751 + HERV16 LTR ERVL 6 240 -4756 213 65 0 0 chr4 132660911 132660942 -51627720 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1276 310 50 40 chr4 132660942 132661357 -51627305 + HERV16 LTR ERVL 240 666 -4330 1716 171 155 11 chr4 132661883 132662075 -51626587 + MSTA LTR MaLR 1 164 -264 180 0 0 0 chr4 132662075 132662095 -51626567 + (TC)n Simple_repeat Simple_repeat 1 20 0 1716 171 155 11 chr4 132662095 132662276 -51626386 + MSTA LTR MaLR 164 428 0 6982 156 13 34 chr4 132662278 132663509 -51625153 + MSTA-int LTR MaLR 3 1207 -373 1346 287 59 9 chr4 132664189 132664284 -51624378 + HERV16 LTR ERVL 2280 2369 -2627 225 0 0 0 chr4 132664284 132664309 -51624353 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1346 287 59 9 chr4 132664309 132664638 -51624024 + HERV16 LTR ERVL 2369 2725 -2271 1822 144 0 34 chr4 132664978 132665276 -51623386 + AluSg SINE Alu 1 288 -22 505 350 0 17 chr4 132665345 132665525 -51623137 + LTR16A LTR ERVL 99 275 -175 2000 211 44 112 chr4 132665526 132666270 -51622392 + LTR8A LTR ERV1 34 727 0 364 303 10 0 chr4 132666270 132666358 -51622304 + LTR16A LTR ERVL 258 346 -104 3976 173 34 56 chr4 132666359 132666929 -51621733 + MER54B LTR ERVL 1 549 -244 6707 111 19 15 chr4 132666929 132667932 -51620730 - LTR13 LTR ERVK 0 1007 1 3976 173 34 56 chr4 132667932 132668164 -51620498 + MER54B LTR ERVL 549 785 -8 281 299 13 0 chr4 132668158 132668235 -51620427 + LTR16A LTR ERVL 373 450 0 * 35 41 0 0 chr4 132668865 132668914 -51619748 + AT_rich Low_complexity Low_complexity 1 49 0 265 297 69 0 chr4 132669602 132669703 -51618959 + HAL1 LINE L1 34 141 -2366 28 0 0 0 chr4 132670586 132670614 -51618048 + AT_rich Low_complexity Low_complexity 1 28 0 344 355 12 6 chr4 132671044 132671216 -51617446 + L1MEc LINE L1 101 273 -6123 1947 362 23 18 chr4 132671989 132673022 -51615640 - HERV16 LTR ERVL -3709 1287 250 9139 191 15 38 chr4 132673097 132676278 -51612384 + L1PB3 LINE L1 3018 6153 -1 675 238 67 6 chr4 132676354 132676518 -51612144 + MER45A DNA AcHobo 5 178 0 23 33 0 0 chr4 132676760 132676790 -51611872 + AT_rich Low_complexity Low_complexity 1 30 0 183 286 48 16 chr4 132677049 132677112 -51611550 - L2 LINE L2 -780 2534 2470 21 0 0 0 chr4 132677464 132677485 -51611177 + AT_rich Low_complexity Low_complexity 1 21 0 181 344 63 41 chr4 132677725 132678091 -51610571 - L2 LINE L2 -1607 1707 1334 511 286 36 44 chr4 132678234 132678577 -51610085 - LTR58 LTR ERV1 -7 672 182 848 231 108 68 chr4 132679361 132679759 -51608903 - MER96B DNA MER1_type 0 417 4 183 129 0 0 chr4 132681333 132681364 -51607298 + (TAG)n Simple_repeat Simple_repeat 2 32 0 378 296 123 20 chr4 132681369 132681572 -51607090 - MIR SINE MIR 0 262 39 3388 202 20 1 chr4 132681593 132682325 -51606337 + L1 LINE L1 4111 4856 -1290 224 382 45 51 chr4 132682879 132683036 -51605626 + L2 LINE L2 3116 3271 -1 33 56 0 0 chr4 132683080 132683134 -51605528 + AT_rich Low_complexity Low_complexity 1 54 0 1980 138 3 0 chr4 132683896 132684178 -51604484 - AluSx SINE Alu -25 287 5 7406 28 22 0 chr4 132684197 132685131 -51603531 - L1PA4 LINE L1 -5 6150 5221 4212 157 80 6 chr4 132685231 132686282 -51602380 + L1PA15 LINE L1 5038 6152 -13 24 32 0 0 chr4 132686286 132686317 -51602345 + AT_rich Low_complexity Low_complexity 1 31 0 209 189 27 0 chr4 132686319 132686356 -51602306 - MIR SINE MIR -217 45 8 354 61 0 0 chr4 132687318 132687367 -51601295 + (CA)n Simple_repeat Simple_repeat 2 50 0 30552 90 6 2 chr4 132688266 132692317 -51596345 + HERVL LTR ERVL 934 4998 -656 1543 263 80 45 chr4 132694049 132694623 -51594039 - MLT1E2 LTR MaLR -5 621 28 21 0 0 0 chr4 132694977 132694998 -51593664 + AT_rich Low_complexity Low_complexity 1 21 0 231 301 31 46 chr4 132696067 132696224 -51592438 + MIR3 SINE MIR 3 154 -67 22 35 0 0 chr4 132696596 132696625 -51592037 + AT_rich Low_complexity Low_complexity 1 29 0 383 251 120 8 chr4 132697169 132697361 -51591301 - MIR SINE MIR -10 252 2 941 288 66 47 chr4 132697965 132698451 -51590211 - ERVL LTR ERVL -1309 4455 3961 6947 66 28 0 chr4 132698857 132699730 -51588932 - MER11D LTR ERVK 0 897 1 26 93 0 0 chr4 132700869 132700944 -51587718 + AT_rich Low_complexity Low_complexity 1 75 0 773 256 28 9 chr4 132701025 132701236 -51587426 + L1PB4 LINE L1 5922 6136 -20 405 213 25 12 chr4 132702354 132702472 -51586190 + FLAM_A SINE Alu 35 153 0 1553 148 45 76 chr4 132704131 132704559 -51584103 + LTR19A LTR ERV1 1 486 0 34 42 0 0 chr4 132704914 132704962 -51583700 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr4 132705770 132705792 -51582870 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 132706219 132706240 -51582422 + AT_rich Low_complexity Low_complexity 1 21 0 445 196 98 10 chr4 132707602 132707704 -51580958 + MLT1B LTR MaLR 1 111 -279 2134 114 3 3 chr4 132707851 132708157 -51580505 + AluSx SINE Alu 1 306 -6 2187 222 16 103 chr4 132708443 132709115 -51579547 + MLT1E2 LTR MaLR 13 626 0 233 309 24 40 chr4 132709926 132710052 -51578610 - L2 LINE L2 -1283 2031 1908 631 180 52 76 chr4 132710646 132710708 -51577954 - MLT2C1 LTR ERVL -2 395 333 267 54 0 0 chr4 132710708 132710745 -51577917 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 631 180 52 76 chr4 132710745 132710854 -51577808 - MLT2C1 LTR ERVL -64 333 228 27 29 0 0 chr4 132711499 132711533 -51577129 + AT_rich Low_complexity Low_complexity 1 34 0 1220 197 100 29 chr4 132711764 132712043 -51576619 + AluJo SINE Alu 1 299 -13 1583 187 6 29 chr4 132712551 132712866 -51575796 - AluJb SINE Alu -2 310 3 1853 182 52 75 chr4 132713372 132713849 -51574813 + MLT1C LTR MaLR 2 467 0 320 162 0 15 chr4 132714033 132714101 -51574561 + GA-rich Low_complexity Low_complexity 2 68 0 1309 218 19 0 chr4 132714120 132714391 -51574271 + AluJo SINE Alu 18 293 -19 2434 168 40 11 chr4 132714664 132715135 -51573527 - L1PB4 LINE L1 -1 7593 7109 985 118 0 0 chr4 132715236 132715372 -51573290 + AluSg/x SINE Alu 164 299 -13 23 33 0 0 chr4 132715385 132715415 -51573247 + AT_rich Low_complexity Low_complexity 1 30 0 1414 210 46 8 chr4 132715415 132715786 -51572876 - L1PB4 LINE L1 -796 6788 6404 1873 138 4 0 chr4 132715975 132716251 -51572411 + AluSx SINE Alu 1 277 -35 348 24 0 0 chr4 132716252 132716293 -51572369 + (TC)n Simple_repeat Simple_repeat 2 42 0 205 176 0 0 chr4 132716293 132716327 -51572335 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 1423 218 7 34 chr4 132717680 132717973 -51570689 + Tigger4(Zombi) DNA MER2_type 1 285 -2446 452 155 0 13 chr4 132717973 132718062 -51570600 - L1PB4 LINE L1 -3928 3656 3569 231 250 0 22 chr4 132718076 132718168 -51570494 + L1MC4 LINE L1 6614 6703 -1339 1913 95 0 11 chr4 132718193 132718455 -51570207 - AluY SINE Alu -15 296 38 4969 237 44 82 chr4 132718455 132720198 -51568464 - L1PB4 LINE L1 -3998 3586 1778 1503 92 0 10 chr4 132720198 132720405 -51568257 + AluY SINE Alu 94 298 -13 4969 237 44 82 chr4 132720405 132720581 -51568081 - L1PB4 LINE L1 -5806 1778 1597 312 70 0 0 chr4 132720581 132720624 -51568038 + (CTGGGG)n Simple_repeat Simple_repeat 4 46 0 4969 237 44 82 chr4 132720624 132720660 -51568002 - L1PB4 LINE L1 -5987 1597 1561 402 85 0 0 chr4 132720660 132720719 -51567943 + (CTGGGG)n Simple_repeat Simple_repeat 6 64 0 4969 237 44 82 chr4 132720719 132721431 -51567231 - L1PB4 LINE L1 -6023 1561 3 562 176 0 0 chr4 132721505 132721596 -51567066 + FRAM SINE Alu 65 155 -21 4694 130 11 0 chr4 132721608 132722324 -51566338 + L1PA15 LINE L1 5436 6159 -6 2056 107 0 17 chr4 132722324 132722641 -51566021 + AluSg1 SINE Alu 1 309 0 2175 107 0 3 chr4 132723129 132723427 -51565235 + AluSx SINE Alu 1 297 -15 25 51 0 0 chr4 132723697 132723736 -51564926 + AT_rich Low_complexity Low_complexity 1 39 0 210 167 0 0 chr4 132724536 132724572 -51564090 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 201 333 16 0 chr4 132726103 132726166 -51562496 + L2 LINE L2 3239 3302 -11 1074 170 129 19 chr4 132726359 132726676 -51561986 + Charlie1b DNA MER1_type 138 489 -34 271 144 93 8 chr4 132726713 132726831 -51561831 + (TA)n Simple_repeat Simple_repeat 2 129 0 2807 99 20 8 chr4 132726834 132727229 -51561433 - MLT2A1 LTR ERVL -44 400 1 5235 64 5 0 chr4 132727229 132727886 -51560776 - HERVL-A1 LTR ERVL 0 5654 4995 5893 88 51 18 chr4 132727986 132728827 -51559835 - HERVL-A1 LTR ERVL -4785 869 1 1904 105 76 13 chr4 132728827 132728870 -51559792 - MLT2A1 LTR ERVL 0 444 405 189 0 0 0 chr4 132728870 132728891 -51559771 + (TA)n Simple_repeat Simple_repeat 1 21 0 1904 105 76 13 chr4 132728891 132729151 -51559511 - MLT2A1 LTR ERVL -39 405 122 24 0 0 0 chr4 132730180 132730204 -51558458 + AT_rich Low_complexity Low_complexity 1 24 0 1404 184 9 85 chr4 132730291 132730622 -51558040 + AluJo SINE Alu 1 306 -6 25 83 0 0 chr4 132730997 132731057 -51557605 + AT_rich Low_complexity Low_complexity 1 60 0 422 278 136 8 chr4 132731057 132731497 -51557165 - L1ME LINE L1 -392 5753 5256 21 0 0 0 chr4 132731673 132731694 -51556968 + AT_rich Low_complexity Low_complexity 1 21 0 1193 228 62 24 chr4 132731726 132732016 -51556646 - AluJb SINE Alu -1 301 1 546 346 40 10 chr4 132732186 132732588 -51556074 - L1ME LINE L1 -2369 3760 3347 2203 157 24 27 chr4 132732595 132733004 -51555658 + MSTA LTR MaLR 1 408 -20 351 304 26 62 chr4 132733664 132733911 -51554751 - L1MC3 LINE L1 -864 6921 6654 1061 256 148 79 chr4 132734348 132734929 -51553733 + MLT1E2 LTR MaLR 6 626 0 29 0 0 0 chr4 132734974 132735003 -51553659 + AT_rich Low_complexity Low_complexity 1 29 0 1934 138 3 22 chr4 132735263 132735575 -51553087 - AluSx SINE Alu -6 306 1 740 264 97 60 chr4 132735613 132736201 -51552461 - L1ME LINE L1 -5026 1093 484 219 242 0 30 chr4 132736476 132736542 -51552120 + CT-rich Low_complexity Low_complexity 3 66 0 2197 135 117 5 chr4 132736655 132737040 -51551622 - MSTA LTR MaLR 0 428 1 7851 160 84 21 chr4 132737040 132738525 -51550137 - MSTA-int LTR MaLR 0 1580 3 1932 136 136 18 chr4 132738527 132738910 -51549752 - MSTA LTR MaLR 0 428 1 226 290 28 47 chr4 132739882 132739989 -51548673 - HAL1 LINE L1 -2260 247 143 27 49 0 0 chr4 132739989 132740030 -51548632 + AT_rich Low_complexity Low_complexity 1 41 0 5160 174 32 15 chr4 132740039 132741874 -51546788 - L1MA4 LINE L1 -30 6270 4425 666 163 4 35 chr4 132741898 132742192 -51546470 + (TA)n Simple_repeat Simple_repeat 1 284 0 1579 162 9 28 chr4 132742195 132742499 -51546163 + MER51A LTR ERV1 350 640 0 295 367 167 9 chr4 132742499 132742834 -51545828 - L2 LINE L2 -31 3282 2895 225 204 0 20 chr4 132742846 132742895 -51545767 + GA-rich Low_complexity Low_complexity 3 50 0 367 273 84 7 chr4 132742994 132743148 -51545514 - LTR33A LTR ERVL -2 521 356 246 321 90 22 chr4 132743244 132743378 -51545284 - LTR33A LTR ERVL -287 236 94 220 191 0 0 chr4 132743456 132743503 -51545159 + (CA)n Simple_repeat Simple_repeat 2 48 0 283 60 40 0 chr4 132743505 132743555 -51545107 + (CACAC)n Simple_repeat Simple_repeat 3 54 0 22 0 0 0 chr4 132744166 132744188 -51544474 + AT_rich Low_complexity Low_complexity 1 22 0 451 314 23 77 chr4 132744279 132744706 -51543956 - MLT1L LTR MaLR -81 534 131 273 324 123 33 chr4 132744806 132745050 -51543612 - MLT1I LTR MaLR -8 401 136 876 308 23 17 chr4 132746459 132746761 -51541901 - MLT1I LTR MaLR -49 360 57 1010 196 0 40 chr4 132746815 132747039 -51541623 - L1MC1 LINE L1 0 6333 6119 2120 88 3 7 chr4 132748756 132749062 -51539600 + AluSx SINE Alu 4 312 0 24 32 0 0 chr4 132749350 132749381 -51539281 + AT_rich Low_complexity Low_complexity 1 31 0 268 316 101 58 chr4 132749785 132749997 -51538665 + L2 LINE L2 2153 2382 -932 2049 121 0 3 chr4 132749997 132750339 -51538323 + AluSx SINE Alu 1 341 0 268 316 101 58 chr4 132750339 132750403 -51538259 + L2 LINE L2 2382 2442 -872 23 0 0 0 chr4 132751489 132751512 -51537150 + AT_rich Low_complexity Low_complexity 1 23 0 2175 81 3 36 chr4 132752030 132752338 -51536324 + AluY SINE Alu 9 306 -5 508 285 180 82 chr4 132752784 132753283 -51535379 + L2 LINE L2 1193 1740 -1574 418 314 35 23 chr4 132755374 132755632 -51533030 + MIR SINE MIR 2 262 0 8101 174 12 4 chr4 132755807 132758122 -51530540 - L1PA13 LINE L1 -5 6158 3826 22247 124 16 8 chr4 132758124 132762681 -51525981 + L1PA5 LINE L1 1549 6147 -7 671 120 10 0 chr4 132762677 132762777 -51525885 + L1P LINE L1 3742 3842 -2304 * 261 297 28 0 chr4 132763818 132763963 -51524699 + (TA)n Simple_repeat Simple_repeat 2 150 0 1643 41 5 0 chr4 132764314 132764510 -51524152 + L1P2 LINE L1 5536 5732 -422 1971 167 111 10 chr4 132764797 132765186 -51523476 + MSTA LTR MaLR 1 428 0 225 0 0 0 chr4 132765490 132765520 -51523142 + (TG)n Simple_repeat Simple_repeat 1 55 0 225 0 0 0 chr4 132765520 132765545 -51523117 + (TG)n Simple_repeat Simple_repeat 2 26 0 1386 223 7 13 chr4 132765773 132766073 -51522589 + AluJo SINE Alu 2 299 -13 22 35 0 0 chr4 132766880 132766909 -51521753 + AT_rich Low_complexity Low_complexity 1 29 0 575 295 12 0 chr4 132767304 132767477 -51521185 - MER5B DNA MER1_type -3 175 1 200 290 0 16 chr4 132767962 132768024 -51520638 + (CATA)n Simple_repeat Simple_repeat 4 64 0 256 200 43 0 chr4 132769769 132769839 -51518823 + L1MA8 LINE L1 6219 6291 0 235 341 36 30 chr4 132770699 132770866 -51517796 - L2 LINE L2 0 3313 3146 2104 116 7 0 chr4 132770957 132771251 -51517411 - AluSg SINE Alu -14 296 1 22 0 0 0 chr4 132772130 132772152 -51516510 + AT_rich Low_complexity Low_complexity 1 22 0 1128 269 39 55 chr4 132772657 132773169 -51515493 + L1MC2 LINE L1 3268 3771 -2375 318 330 81 11 chr4 132773190 132773375 -51515287 + L1MC2 LINE L1 3889 4086 -2060 361 222 48 121 chr4 132773379 132773508 -51515154 - L1M4 LINE L1 -2232 3914 3810 255 103 0 0 chr4 132773508 132773547 -51515115 + (TG)n Simple_repeat Simple_repeat 2 40 0 361 222 48 121 chr4 132773547 132773665 -51514997 - L1M4 LINE L1 -2336 3810 3685 3496 249 66 69 chr4 132773754 132774945 -51513717 + L1MC2 LINE L1 4098 5354 -810 2385 53 0 0 chr4 132774945 132775265 -51513397 - AluY SINE Alu 0 320 1 3496 249 66 69 chr4 132775265 132776056 -51512606 + L1MC2 LINE L1 5354 6146 -18 27 49 0 0 chr4 132776914 132776955 -51511707 + AT_rich Low_complexity Low_complexity 1 41 0 226 291 64 55 chr4 132777293 132777403 -51511259 - MIR SINE MIR -30 232 122 279 0 0 0 chr4 132777716 132777747 -51510915 + (CA)n Simple_repeat Simple_repeat 2 32 0 204 305 107 51 chr4 132777932 132778109 -51510553 - L2 LINE L2 -775 2539 2353 4939 149 17 20 chr4 132778304 132779194 -51509468 + L1P3 LINE L1 897 1763 -4688 513 163 0 0 chr4 132779318 132779410 -51509252 + C-rich Low_complexity Low_complexity 5 96 0 248 231 0 19 chr4 132779412 132779464 -51509198 + CT-rich Low_complexity Low_complexity 3 53 0 1204 230 30 7 chr4 132779466 132779770 -51508892 - L1MA9 LINE L1 -43 6269 5959 453 289 122 44 chr4 132779771 132779951 -51508711 + L2 LINE L2 2623 2816 -498 794 277 111 28 chr4 132780548 132780971 -51507691 + LTR40c LTR ERVL 4 461 -4 27 62 0 0 chr4 132781668 132781716 -51506946 + AT_rich Low_complexity Low_complexity 1 48 0 2468 193 21 59 chr4 132783160 132783736 -51504926 - MLT2B3 LTR ERVL 0 554 1 490 114 13 0 chr4 132784544 132784623 -51504039 - MADE1 DNA Mariner 0 80 1 3909 162 12 51 chr4 132785046 132785793 -51502869 - MER72 LTR ERV1 -4 718 1 25 51 0 0 chr4 132786174 132786213 -51502449 + AT_rich Low_complexity Low_complexity 1 39 0 204 125 0 0 chr4 132786966 132786998 -51501664 + (A)n Simple_repeat Simple_repeat 1 32 0 462 212 20 0 chr4 132787835 132787934 -51500728 + L1PA12 LINE L1 6052 6152 -16 213 175 0 0 chr4 132787937 132787977 -51500685 + (TA)n Simple_repeat Simple_repeat 1 40 0 32 26 0 0 chr4 132788373 132788412 -51500250 + AT_rich Low_complexity Low_complexity 1 39 0 263 154 242 22 chr4 132788768 132788859 -51499803 + MER104 DNA Tc2 1 111 -69 2000 138 7 3 chr4 132789019 132789324 -51499338 - AluSx SINE Alu -6 306 1 333 68 0 0 chr4 132790363 132790407 -51498255 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 569 245 5 76 chr4 132790407 132790591 -51498071 - FAM SINE Alu -7 42 1 21 0 0 0 chr4 132790717 132790738 -51497924 + AT_rich Low_complexity Low_complexity 1 21 0 4929 50 17 0 chr4 132790867 132791506 -51497156 + L1P LINE L1 4584 5233 -913 746 170 50 19 chr4 132791610 132791769 -51496893 + MSTB1 LTR MaLR 269 432 0 2021 144 0 3 chr4 132791845 132792150 -51496512 - AluSx SINE Alu -8 304 1 27 29 0 0 chr4 132792782 132792816 -51495846 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr4 132793714 132793745 -51494917 + AT_rich Low_complexity Low_complexity 1 31 0 440 168 43 0 chr4 132795876 132795986 -51492676 + MER61E LTR ERV1 1 118 -484 256 289 13 0 chr4 132796088 132796164 -51492498 + LTR28 LTR ERV1 147 223 -797 250 254 134 0 chr4 132796157 132796224 -51492438 + MER51A LTR ERV1 208 283 -351 * 551 247 42 41 chr4 132796246 132796520 -51492142 + MER61D LTR ERV1 209 486 -15 207 293 20 40 chr4 132797480 132797579 -51491083 - MER5B DNA MER1_type -80 98 2 755 249 35 35 chr4 132798084 132798313 -51490349 + MIR SINE MIR 7 235 -27 182 118 29 0 chr4 132798335 132798369 -51490293 + (TTA)n Simple_repeat Simple_repeat 1 35 0 333 111 238 0 chr4 132799084 132799147 -51489515 - MADE1 DNA Mariner 0 80 3 816 210 0 0 chr4 132799241 132799384 -51489278 + FRAM SINE Alu 1 143 -33 202 56 56 0 chr4 132799385 132799421 -51489241 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 236 143 0 0 chr4 132799557 132799592 -51489070 + LTR67 LTR ERVL 521 555 -2 3230 247 35 93 chr4 132799731 132799929 -51488733 - L1P LINE L1 -1538 4608 4400 276 30 0 0 chr4 132799929 132799962 -51488700 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 3230 247 35 93 chr4 132799962 132800067 -51488595 - L1P LINE L1 -1746 4400 4290 2299 87 0 13 chr4 132800067 132800379 -51488283 + AluY SINE Alu 1 308 -3 3230 247 35 93 chr4 132800379 132801400 -51487262 - L1P LINE L1 -1856 4290 3361 5419 113 5 10 chr4 132801402 132802229 -51486433 + L1PB1 LINE L1 5329 6151 0 329 67 41 0 chr4 132802279 132802338 -51486324 - L1M LINE L1 -753 5401 5347 252 143 0 0 chr4 132802398 132802440 -51486222 + (TA)n Simple_repeat Simple_repeat 1 42 0 790 321 112 53 chr4 132802717 132803764 -51484898 + L2 LINE L2 2180 3301 -12 1784 180 84 28 chr4 132853934 132854615 -51434047 - L1M2 LINE L1 -618 6384 1982 21 0 0 0 chr4 132854837 132854858 -51433804 + AT_rich Low_complexity Low_complexity 1 21 0 810 208 75 30 chr4 132854860 132855138 -51433524 + MER54A LTR ERVL 19 345 -556 481 185 0 0 chr4 132855136 132855217 -51433445 + MER54A LTR ERVL 819 899 -2 * 493 256 6 79 chr4 132856099 132856263 -51432399 - LTR49-int LTR ERV1 -200 4736 4585 374 231 0 33 chr4 132856415 132856506 -51432156 - LTR49-int LTR ERV1 -474 5857 5770 3264 244 67 60 chr4 132856573 132857805 -51430857 - LTR49-int LTR ERV1 -466 4470 3231 1370 278 91 36 chr4 132857810 132860195 -51428467 - L1MCc LINE L1 -3419 3522 847 262 276 0 11 chr4 132860719 132860806 -51427856 - L1MCc LINE L1 -6265 158 73 25 65 0 0 chr4 132861086 132861132 -51427530 + AT_rich Low_complexity Low_complexity 1 46 0 30 69 0 0 chr4 132861820 132861878 -51426784 + AT_rich Low_complexity Low_complexity 1 58 0 263 310 131 21 chr4 132862094 132862239 -51426423 - MIR SINE MIR -62 200 40 24 32 0 0 chr4 132862400 132862431 -51426231 + AT_rich Low_complexity Low_complexity 1 31 0 1983 135 143 8 chr4 132863054 132863431 -51425231 + MSTA LTR MaLR 1 428 0 2120 177 60 33 chr4 132863481 132863962 -51424700 - LOR1a LTR ERV1 0 497 4 3276 165 34 17 chr4 132863969 132864815 -51423847 - LOR1a-int LTR ERV1 -7 8113 7172 230 258 16 0 chr4 132864819 132864881 -51423781 - MER72 LTR ERV1 -650 72 10 858 186 180 6 chr4 132864881 132865064 -51423598 - LOR1a-int LTR ERV1 -1077 7043 6829 1895 135 0 0 chr4 132865226 132865500 -51423162 - LOR1a-int LTR ERV1 -4070 4050 3777 456 200 10 0 chr4 132865509 132865609 -51423053 - LOR1a-int LTR ERV1 -2204 4127 4027 16103 160 60 13 chr4 132865802 132868906 -51419756 - LOR1a-int LTR ERV1 -4336 3784 536 2384 168 17 0 chr4 132868907 132869318 -51419344 - LOR1a-int LTR ERV1 -7702 418 1 2367 165 60 25 chr4 132869318 132869798 -51418864 - LOR1a LTR ERV1 0 497 1 1675 260 67 34 chr4 132869938 132871105 -51417557 - L1ME1 LINE L1 -120 6046 4856 22 35 0 0 chr4 132872498 132872527 -51416135 + AT_rich Low_complexity Low_complexity 1 29 0 2260 94 0 0 chr4 132872833 132873130 -51415532 + AluY SINE Alu 1 297 -14 1655 153 35 7 chr4 132874788 132875075 -51413587 + AluJb SINE Alu 3 297 -15 5183 187 30 18 chr4 132875358 132877402 -51411260 - L1PA16 LINE L1 -37 6186 4133 4418 265 28 11 chr4 132877412 132878852 -51409810 - L1ME1 LINE L1 -2484 3662 2199 2175 255 18 26 chr4 132878846 132879710 -51408952 - L1PA16 LINE L1 -4545 1658 832 * 24 32 0 0 chr4 132881219 132881250 -51407412 + AT_rich Low_complexity Low_complexity 1 31 0 22 70 0 0 chr4 132883422 132883465 -51405197 + AT_rich Low_complexity Low_complexity 1 43 0 213 175 0 0 chr4 132884449 132884489 -51404173 + (CA)n Simple_repeat Simple_repeat 2 41 0 288 303 34 0 chr4 132884617 132884706 -51403956 + L1MEd LINE L1 602 693 -5426 37 23 0 0 chr4 132885090 132885134 -51403528 + AT_rich Low_complexity Low_complexity 1 44 0 221 194 15 45 chr4 132885327 132885394 -51403268 + (CATATA)n Simple_repeat Simple_repeat 4 68 0 240 111 0 0 chr4 132885505 132885541 -51403121 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 253 250 8 40 chr4 132886366 132886490 -51402172 + A-rich Low_complexity Low_complexity 6 125 0 304 343 75 21 chr4 132886846 132886955 -51401707 + HAL1 LINE L1 1445 1547 -960 2199 114 3 3 chr4 132886955 132887253 -51401409 - AluSg SINE Alu -12 298 1 304 343 75 21 chr4 132887253 132887423 -51401239 + HAL1 LINE L1 1547 1739 -768 716 286 50 13 chr4 132887443 132887761 -51400901 + L1MC4a LINE L1 6161 6490 -1318 1425 214 27 101 chr4 132887764 132888320 -51400342 + MER65B LTR ERV1 10 524 -7 297 314 52 10 chr4 132888444 132888605 -51400057 + L1MD3 LINE L1 6609 6743 -1252 722 286 54 7 chr4 132888630 132888910 -51399752 + L1MC4 LINE L1 6893 7185 -857 1089 252 73 15 chr4 132889122 132889451 -51399211 + L1MC4 LINE L1 7213 7560 -482 273 371 87 34 chr4 132889633 132889897 -51398765 - L2 LINE L2 -218 3095 2818 2241 106 0 3 chr4 132890100 132890403 -51398259 + AluSg SINE Alu 3 304 -6 216 291 13 13 chr4 132891510 132891589 -51397073 + GA-rich Low_complexity Low_complexity 3 81 0 238 365 94 5 chr4 132891749 132891952 -51396710 + L2 LINE L2 2726 2946 -368 182 329 104 24 chr4 132892077 132892241 -51396421 + L2 LINE L2 3103 3279 -34 254 71 0 24 chr4 132892243 132892285 -51396377 + (TC)n Simple_repeat Simple_repeat 2 42 0 241 288 0 0 chr4 132892413 132892472 -51396190 + (TA)n Simple_repeat Simple_repeat 2 60 0 1589 191 3 25 chr4 132892597 132892916 -51395746 + AluJo SINE Alu 1 312 0 21 36 0 0 chr4 132893260 132893288 -51395374 + AT_rich Low_complexity Low_complexity 1 28 0 217 191 21 0 chr4 132893574 132893621 -51395041 + (TA)n Simple_repeat Simple_repeat 2 49 0 1573 186 10 3 chr4 132893885 132894186 -51394476 - AluJb SINE Alu -1 311 9 429 20 0 0 chr4 132894834 132894884 -51393778 + (CA)n Simple_repeat Simple_repeat 1 50 0 295 237 40 52 chr4 132895442 132895612 -51393050 + L1M3d LINE L1 950 1317 -4733 2252 140 3 24 chr4 132896747 132897119 -51391543 + THE1B LTR MaLR 1 364 0 379 320 65 19 chr4 132898753 132899051 -51389611 + L2 LINE L2 2857 3237 -76 964 282 107 0 chr4 132899051 132899331 -51389331 + MLT1E2 LTR MaLR 317 626 0 35 41 0 0 chr4 132899838 132899887 -51388775 + AT_rich Low_complexity Low_complexity 1 49 0 182 326 79 56 chr4 132899903 132899992 -51388670 + MIR SINE MIR 16 106 -102 279 0 0 0 chr4 132900124 132900155 -51388507 + (TG)n Simple_repeat Simple_repeat 2 32 0 2005 161 42 11 chr4 132900388 132900748 -51387914 - THE1C LTR MaLR -4 371 1 393 346 84 19 chr4 132900879 132901093 -51387569 - MIR SINE MIR -28 234 7 259 177 0 51 chr4 132901142 132901221 -51387441 + CT-rich Low_complexity Low_complexity 1 75 0 192 217 0 100 chr4 132901337 132901397 -51387265 - MER5A DNA MER1_type 0 189 136 221 143 0 41 chr4 132901872 132901921 -51386741 + (TATG)n Simple_repeat Simple_repeat 2 48 0 23 33 0 0 chr4 132902060 132902090 -51386572 + AT_rich Low_complexity Low_complexity 1 30 0 343 311 49 0 chr4 132904339 132904461 -51384201 - L2 LINE L2 0 3313 3186 21 36 0 0 chr4 132904522 132904550 -51384112 + AT_rich Low_complexity Low_complexity 1 28 0 2453 68 0 0 chr4 132904614 132904921 -51383741 + AluY SINE Alu 1 307 -4 452 291 22 28 chr4 132905518 132905700 -51382962 + Charlie8 DNA MER1_type 83 263 -2154 224 236 9 0 chr4 132906144 132906254 -51382408 + (TA)n Simple_repeat Simple_repeat 2 112 0 1011 299 67 49 chr4 132906653 132907503 -51381159 - HAL1 LINE L1 -653 1854 990 311 200 70 26 chr4 132907529 132907644 -51381018 - Looper DNA T2_type -26 1532 1413 2504 247 64 20 chr4 132907682 132908558 -51380104 - Looper DNA T2_type -590 968 55 775 338 86 43 chr4 132908643 132909554 -51379108 - HAL1 LINE L1 -1550 957 8 1975 160 36 17 chr4 132910758 132911120 -51377542 - LTR57 LTR ERVL -42 369 1 18867 174 28 15 chr4 132911545 132919157 -51369505 + L1MA1 LINE L1 12 7721 0 1415 238 12 15 chr4 132919303 132919643 -51369019 - MER58B DNA MER1_type -1 340 2 30 83 0 0 chr4 132920515 132920587 -51368075 + AT_rich Low_complexity Low_complexity 1 72 0 294 312 70 17 chr4 132921009 132921474 -51367188 + L1MEc LINE L1 1313 1709 -867 953 250 4 30 chr4 132921670 132921906 -51366756 - MLT1D LTR MaLR 0 505 276 409 267 0 10 chr4 132922540 132922641 -51366021 + MIR SINE MIR 116 215 -47 37 39 0 0 chr4 132923013 132923064 -51365598 + AT_rich Low_complexity Low_complexity 1 51 0 39363 76 17 0 chr4 132923104 132929145 -51359517 + L1PA5 LINE L1 1 6141 -13 387 0 0 0 chr4 132929145 132929188 -51359474 + (CA)n Simple_repeat Simple_repeat 2 44 0 1009 154 82 23 chr4 132929502 132929722 -51358940 + L1MA8 LINE L1 6053 6285 -6 183 42 0 0 chr4 132930179 132930203 -51358459 + (T)n Simple_repeat Simple_repeat 1 24 0 232 254 0 0 chr4 132930340 132930395 -51358267 + A-rich Low_complexity Low_complexity 5 59 0 3113 92 0 0 chr4 132930836 132931260 -51357402 - L1PA7 LINE L1 -1807 4339 3916 7179 89 16 0 chr4 132931260 132933047 -51355615 + L1PA7 LINE L1 4349 6152 -2 234 0 0 0 chr4 132933458 132933484 -51355178 + (TAAAA)n Simple_repeat Simple_repeat 1 26 0 270 56 0 0 chr4 132934179 132934215 -51354447 + (TA)n Simple_repeat Simple_repeat 1 36 0 30 45 0 0 chr4 132935259 132935303 -51353359 + AT_rich Low_complexity Low_complexity 1 44 0 33 43 0 0 chr4 132935327 132935374 -51353288 + AT_rich Low_complexity Low_complexity 1 47 0 954 271 50 52 chr4 132936334 132936932 -51351730 + L1MC3 LINE L1 3052 3648 -2498 4190 218 114 64 chr4 132936932 132938422 -51350240 + L1MC3 LINE L1 5638 7201 -584 541 251 141 113 chr4 132938600 132938955 -51349707 - MLT1A1 LTR MaLR 0 365 1 216 67 0 0 chr4 132939388 132939418 -51349244 + (TG)n Simple_repeat Simple_repeat 2 31 0 197 318 33 40 chr4 132941095 132941121 -51347541 + L2 LINE L2 972 997 -2317 743 146 16 16 chr4 132941121 132941244 -51347418 - FLAM_C SINE Alu -9 124 2 197 318 33 40 chr4 132941244 132941368 -51347294 + L2 LINE L2 997 1121 -2193 368 296 186 56 chr4 132941381 132941860 -51346802 + L2 LINE L2 1588 2128 -1186 2220 197 17 7 chr4 132941860 132942271 -51346391 - MLT2B2 LTR ERVL -1 514 100 407 169 13 13 chr4 132942338 132942415 -51346247 - MLT2B2 LTR ERVL -422 93 17 745 347 169 2 chr4 132942423 132942973 -51345689 + L2 LINE L2 2128 2769 -545 476 295 63 100 chr4 132943319 132943810 -51344852 + L2 LINE L2 2840 3312 -1 294 327 27 18 chr4 132944296 132944406 -51344256 + L2 LINE L2 3192 3302 -11 539 238 132 21 chr4 132945554 132945743 -51342919 - MER63A DNA MER1_type 0 210 1 363 375 68 28 chr4 132946595 132946846 -51341816 - MIR SINE MIR 0 262 2 1483 341 36 20 chr4 132947731 132948388 -51340274 - L1M4b LINE L1 -5928 931 264 236 353 82 0 chr4 132948454 132948576 -51340086 + MIR3 SINE MIR 30 161 -47 420 127 0 0 chr4 132948671 132948734 -51339928 - MSTD LTR MaLR 0 396 334 2312 101 47 14 chr4 132948887 132949288 -51339374 + MER51C LTR ERV1 1 395 -245 2449 18 7 0 chr4 132949299 132949582 -51339080 - L1PA2 LINE L1 -1893 4253 3969 9515 24 0 0 chr4 132949582 132951480 -51337182 + L1PA2 LINE L1 4258 6155 0 1408 141 9 0 chr4 132951480 132951707 -51336955 + MER51C LTR ERV1 412 640 0 409 266 64 25 chr4 132951723 132951929 -51336733 - MSTC LTR MaLR -118 278 1 188 241 37 19 chr4 132951959 132952013 -51336649 - L2 LINE L2 -2 3270 3216 1370 219 11 7 chr4 132952609 132952888 -51335774 + AluJo SINE Alu 1 280 -32 225 0 0 0 chr4 132952890 132952915 -51335747 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 23 54 0 0 chr4 132952918 132952955 -51335707 + AT_rich Low_complexity Low_complexity 1 37 0 4308 243 25 52 chr4 132953823 132954543 -51334119 + L1MB3 LINE L1 3868 4605 -1578 194 61 0 30 chr4 132954543 132954576 -51334086 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 4308 243 25 52 chr4 132954576 132954890 -51333772 + L1MB3 LINE L1 4605 4926 -1257 2073 136 0 3 chr4 132954890 132955191 -51333471 - AluSx SINE Alu -12 300 1 4308 243 25 52 chr4 132955191 132956540 -51332122 + L1MB3 LINE L1 4926 6180 -3 21 0 0 0 chr4 132957091 132957112 -51331550 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 132957404 132957427 -51331235 + AT_rich Low_complexity Low_complexity 1 23 0 2618 93 58 19 chr4 132957429 132957860 -51330802 + LTR7 LTR ERV1 1 448 -2 568 302 56 36 chr4 132957891 132958143 -51330519 + MIR SINE MIR 6 262 0 2205 112 0 3 chr4 132958156 132958459 -51330203 - AluY SINE Alu -8 303 2 22 0 0 0 chr4 132959417 132959439 -51329223 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr4 132959780 132959815 -51328847 + AT_rich Low_complexity Low_complexity 1 35 0 395 333 79 20 chr4 132960233 132960690 -51327972 - L1MC4a LINE L1 -1910 5898 5415 2463 67 160 5 chr4 132960699 132961087 -51327575 + LTR7 LTR ERV1 1 448 -2 2071 105 11 3 chr4 132961206 132961491 -51327171 - AluSq SINE Alu -18 295 9 3967 168 21 4 chr4 132961520 132962242 -51326420 - MER50 LTR ERV1 0 734 1 25 0 0 0 chr4 132963509 132963534 -51325128 + AT_rich Low_complexity Low_complexity 1 25 0 1345 268 42 13 chr4 132964149 132964550 -51324112 - MLT1E2 LTR MaLR -17 601 198 602 167 185 6 chr4 132964666 132964828 -51323834 - L1MA4 LINE L1 -6 6294 6104 23 54 0 0 chr4 132964965 132965002 -51323660 + AT_rich Low_complexity Low_complexity 1 37 0 9646 246 65 20 chr4 132965081 132965171 -51323491 - ERVL LTR ERVL -26 5738 5653 682 183 80 175 chr4 132965171 132965434 -51323228 + MER8 DNA MER2_type 2 239 0 9646 246 65 20 chr4 132965434 132967891 -51320771 - ERVL LTR ERVL -111 5653 3077 582 236 109 29 chr4 132967893 132968067 -51320595 - MLT1A2 LTR MaLR 0 374 203 1834 299 20 19 chr4 132968079 132968717 -51319945 - ERVL LTR ERVL -4260 1504 866 389 290 154 23 chr4 132968709 132968923 -51319739 - ERVL LTR ERVL -5166 598 357 * 2365 77 0 3 chr4 132969177 132969487 -51319175 - AluY SINE Alu -2 309 1 720 187 0 0 chr4 132969514 132969648 -51319014 - MLT2C1 LTR ERVL -263 134 1 1645 242 42 16 chr4 132971691 132972598 -51316064 - L1M4 LINE L1 -442 5732 4804 1979 174 40 18 chr4 132972605 132973002 -51315660 - MER65A LTR ERV1 0 445 40 1879 238 94 12 chr4 132973002 132973566 -51315096 - MER65A-int LTR ERV1 -24 4847 4238 2404 234 51 16 chr4 132973566 132974078 -51314584 - MER65A-int LTR ERV1 -738 4133 3604 755 208 48 44 chr4 132974177 132974423 -51314239 - MER65-int LTR ERV1 -980 3956 3632 721 217 38 66 chr4 132974452 132974910 -51313752 - MER65-int LTR ERV1 -2076 4255 3789 733 206 32 69 chr4 132975164 132975411 -51313251 - MER65-int LTR ERV1 -2868 3730 3493 770 222 60 84 chr4 132975637 132976374 -51312288 - MER65-int LTR ERV1 -3117 3481 1541 584 223 31 58 chr4 132976451 132976675 -51311987 - MER65-int LTR ERV1 -2351 2520 2303 255 297 84 13 chr4 132976675 132976830 -51311832 - L1M4 LINE L1 -2642 3504 3339 325 257 9 0 chr4 132977458 132977563 -51311099 + (TA)n Simple_repeat Simple_repeat 2 107 0 484 347 64 5 chr4 132978090 132978309 -51310353 - L3 LINE CR1 -817 760 529 371 281 19 91 chr4 132981811 132982021 -51306641 - MIR SINE MIR -2 260 66 292 282 34 20 chr4 132982576 132982718 -51305944 - MLT1E3 LTR MaLR -34 590 391 200 247 0 12 chr4 132983669 132983750 -51304912 + CT-rich Low_complexity Low_complexity 2 81 0 21 36 0 0 chr4 132984867 132984895 -51303767 + AT_rich Low_complexity Low_complexity 1 28 0 255 243 57 14 chr4 132985849 132985919 -51302743 + MIR SINE MIR 97 169 -93 372 271 78 16 chr4 132986240 132986369 -51302293 + ERVL-E LTR ERVL 3217 3337 -2148 1654 185 24 0 chr4 132986438 132986725 -51301937 + AluJb SINE Alu 1 294 -18 369 277 10 0 chr4 132986818 132986919 -51301743 + ERVL-E LTR ERVL 5640 5741 -23 385 283 38 0 chr4 132986997 132987103 -51301559 + MLT2E LTR ERVL 11 120 -508 541 122 49 0 chr4 132987315 132987397 -51301265 + MER50 LTR ERV1 626 711 -23 3976 163 27 8 chr4 132987398 132989041 -51299621 + MER50-int LTR ERV1 1 1850 -5355 * 4971 217 18 32 chr4 132989033 132990122 -51298540 + MER50-int LTR ERV1 2784 3857 -3348 1725 116 37 14 chr4 132990118 132990412 -51298250 + MER50-int LTR ERV1 3309 3609 -2337 * 7744 148 74 32 chr4 132990410 132991298 -51297364 + MER50-int LTR ERV1 4711 5684 -1521 7385 27 12 9 chr4 132991298 132992461 -51296201 + L1PA4 LINE L1 4988 6154 -1 7744 148 74 32 chr4 132992461 132993022 -51295640 + MER50-int LTR ERV1 5684 6220 -985 2361 124 0 17 chr4 132993002 132993364 -51295298 + MER50-int LTR ERV1 6842 7197 -8 * 3044 136 67 114 chr4 132993364 132994115 -51294547 + MER50 LTR ERV1 1 715 -19 272 355 11 0 chr4 132994110 132994203 -51294459 + MLT2B3 LTR ERVL 271 364 -264 * 334 257 7 7 chr4 132994229 132994373 -51294289 + CT-rich Low_complexity Low_complexity 4 147 0 21 36 0 0 chr4 132994391 132994419 -51294243 + AT_rich Low_complexity Low_complexity 1 28 0 1095 226 110 39 chr4 132995330 132995693 -51292969 + MER76 LTR ERV 1 389 -299 351 330 10 45 chr4 132995767 132995967 -51292695 + L1ME LINE L1 782 974 -5096 2373 69 3 3 chr4 132996020 132996325 -51292337 + AluY SINE Alu 1 305 -6 1283 241 84 27 chr4 132996366 132996889 -51291773 + L1M4 LINE L1 3952 4504 -1642 415 248 60 54 chr4 132996950 132997099 -51291563 - L2 LINE L2 -1894 1420 1271 24 53 0 0 chr4 132997134 132997172 -51291490 + AT_rich Low_complexity Low_complexity 1 38 0 1081 198 279 9 chr4 132997452 132997771 -51290891 - MER47B DNA MER2_type -13 405 1 467 351 63 24 chr4 132997816 132998229 -51290433 + L1ME LINE L1 2145 2573 -3507 1925 96 0 38 chr4 132998555 132998894 -51289768 + AluY SINE Alu 2 329 0 1122 276 109 60 chr4 132999409 133000095 -51288567 - HAL1 LINE L1 -1446 1061 342 3441 196 40 5 chr4 133000109 133000853 -51287809 - L1MA5 LINE L1 -1 6299 5530 667 177 46 10 chr4 133001974 133002089 -51286573 + MLT2B3 LTR ERVL 354 519 -35 649 63 21 0 chr4 133002089 133002184 -51286478 + (TCTA)n Simple_repeat Simple_repeat 2 98 0 667 177 46 10 chr4 133002184 133002214 -51286448 + MLT2B3 LTR ERVL 519 546 -8 25 51 0 0 chr4 133003618 133003657 -51285005 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr4 133003831 133003859 -51284803 + AT_rich Low_complexity Low_complexity 1 28 0 297 246 181 53 chr4 133004856 133005027 -51283635 - L2 LINE L2 -100 3213 3021 194 94 0 94 chr4 133005302 133005366 -51283296 + (TTTC)n Simple_repeat Simple_repeat 3 60 0 321 332 82 34 chr4 133005477 133005745 -51282917 - L2 LINE L2 0 3313 3033 2162 308 97 40 chr4 133005749 133006241 -51282421 - L2 LINE L2 -619 2695 2232 2191 112 0 3 chr4 133006241 133006537 -51282125 + AluSc SINE Alu 1 295 -14 2162 308 97 40 chr4 133006537 133007407 -51281255 - L2 LINE L2 -1082 2232 1256 21 57 0 0 chr4 133007587 133007622 -51281040 + AT_rich Low_complexity Low_complexity 1 35 0 222 237 68 0 chr4 133007627 133007686 -51280976 + MIR SINE MIR 200 262 0 261 0 0 0 chr4 133009205 133009234 -51279428 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1826 97 56 8 chr4 133009244 133009511 -51279151 - AluSx SINE Alu -32 280 1 27 29 0 0 chr4 133010016 133010050 -51278612 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr4 133010074 133010096 -51278566 + AT_rich Low_complexity Low_complexity 1 22 0 1584 237 34 38 chr4 133010128 133010597 -51278065 - MLT1C LTR MaLR 0 467 1 2418 41 0 0 chr4 133010799 133011092 -51277570 - L1PA5 LINE L1 -1 6153 5861 650 53 2 19 chr4 133011092 133011196 -51277466 + L1PA5 LINE L1 5776 5872 -291 * 3074 265 77 16 chr4 133011193 133012285 -51276377 - L1PBb LINE L1 -4594 2254 999 469 324 28 76 chr4 133012455 133012745 -51275917 - L1PBb LINE L1 -5781 1068 793 354 291 67 159 chr4 133012930 133013421 -51275241 - L1PBb LINE L1 -6032 817 372 895 271 51 68 chr4 133013446 133013800 -51274862 - L1PBb LINE L1 -6428 421 74 31 26 0 0 chr4 133013984 133014022 -51274640 + AT_rich Low_complexity Low_complexity 1 38 0 309 336 8 41 chr4 133015665 133015787 -51272875 - MER5B DNA MER1_type -3 175 58 244 295 164 0 chr4 133018437 133018559 -51270103 + L2 LINE L2 3171 3312 -1 353 160 23 0 chr4 133018971 133019054 -51269608 + L1MA4 LINE L1 5508 5593 -587 256 291 13 0 chr4 133019073 133019152 -51269510 - MER87 LTR ERV1 -67 474 395 904 275 30 11 chr4 133019162 133019431 -51269231 - LTR38 LTR ERV1 -189 367 94 260 152 0 0 chr4 133019512 133019558 -51269104 + L1MB1 LINE L1 5559 5604 -730 12659 228 28 28 chr4 133019575 133024860 -51263802 + L1MA8 LINE L1 2061 7336 -374 2534 118 62 5 chr4 133024860 133025265 -51263397 + MSTA LTR MaLR 1 428 0 12659 228 28 28 chr4 133025265 133025331 -51263331 + L1MA8 LINE L1 7336 7400 -310 1439 210 39 9 chr4 133025326 133025660 -51263002 + L1MB1 LINE L1 5612 5955 -213 * 475 219 44 0 chr4 133025747 133025861 -51262801 + L1MB1 LINE L1 5962 6080 -88 924 300 58 34 chr4 133025968 133026521 -51262141 - L1ME LINE L1 -5239 831 266 3270 92 13 0 chr4 133026882 133027329 -51261333 + MLT2A2 LTR ERVL 1 453 0 23 33 0 0 chr4 133027352 133027382 -51261280 + AT_rich Low_complexity Low_complexity 1 30 0 1486 248 28 17 chr4 133027582 133028042 -51260620 - MLT1C LTR MaLR -2 465 1 3096 172 17 0 chr4 133028248 133028834 -51259828 + L1MA4 LINE L1 5700 6295 -5 39 38 0 0 chr4 133030325 133030378 -51258284 + AT_rich Low_complexity Low_complexity 1 53 0 35 41 0 0 chr4 133030791 133030840 -51257822 + AT_rich Low_complexity Low_complexity 1 49 0 790 307 68 31 chr4 133031368 133031694 -51256968 + LTR16A LTR ERVL 112 449 -1 22 0 0 0 chr4 133031805 133031827 -51256835 + AT_rich Low_complexity Low_complexity 1 22 0 2061 323 56 18 chr4 133032130 133033059 -51255603 + HERV16 LTR ERVL 494 1457 -3539 877 342 40 40 chr4 133033206 133033636 -51255026 + HERV16 LTR ERVL 1801 2230 -2766 854 237 31 10 chr4 133033701 133033895 -51254767 + MER70B LTR ERVL 279 476 -102 252 270 0 16 chr4 133033922 133033985 -51254677 + HERV16 LTR ERVL 3030 3091 -1905 1086 249 47 39 chr4 133034084 133034413 -51254249 - MLT1A1 LTR MaLR 0 365 31 301 82 0 20 chr4 133034413 133034462 -51254200 - L1PA10 LINE L1 -2 6166 6119 1086 249 47 39 chr4 133034462 133034494 -51254168 - MLT1A1 LTR MaLR -334 31 1 622 333 72 59 chr4 133034523 133035358 -51253304 + HERV16 LTR ERVL 3137 3792 -1204 300 347 43 55 chr4 133035660 133036147 -51252515 + HERV16 LTR ERVL 4888 5368 -396 856 268 23 83 chr4 133036293 133036678 -51251984 + LTR16A LTR ERVL 89 450 0 280 103 35 0 chr4 133037390 133037448 -51251214 + (TG)n Simple_repeat Simple_repeat 2 61 0 21 112 0 0 chr4 133037471 133037569 -51251093 + AT_rich Low_complexity Low_complexity 1 98 0 2355 78 0 0 chr4 133037736 133038213 -51250449 + AluY SINE Alu 1 477 0 519 41 103 0 chr4 133038491 133038636 -51250026 + (TA)n Simple_repeat Simple_repeat 1 160 0 1341 148 8 4 chr4 133039648 133039892 -51248770 - L1MA4A LINE L1 0 7005 6761 1015 99 8 0 chr4 133039904 133040035 -51248627 - AluY SINE Alu -179 132 1 12432 205 50 47 chr4 133040035 133042517 -51246145 - L1MA4A LINE L1 -230 6775 4303 2571 36 3 0 chr4 133042517 133042822 -51245840 + AluY SINE Alu 1 306 -5 12432 205 50 47 chr4 133042822 133047077 -51241585 - L1MA4A LINE L1 -2702 4303 13 21 0 0 0 chr4 133047145 133047166 -51241496 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 133049228 133049258 -51239404 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr4 133051064 133051090 -51237572 + AT_rich Low_complexity Low_complexity 1 26 0 201 366 24 32 chr4 133051274 133051397 -51237265 - L3 LINE CR1 -765 812 691 296 130 0 0 chr4 133051848 133051894 -51236768 + tRNA-Gln-CAG tRNA tRNA 1 46 -29 1113 296 75 38 chr4 133053471 133053992 -51234670 + MLT1E2 LTR MaLR 87 626 0 810 96 0 0 chr4 133055440 133055544 -51233118 + AluY SINE Alu 1 104 -207 950 279 80 49 chr4 133056806 133057233 -51231429 + LTR16B LTR ERVL 25 464 0 360 302 137 0 chr4 133057298 133057480 -51231182 + L1ME LINE L1 3767 3973 -2173 234 0 0 0 chr4 133058537 133058563 -51230099 + (CA)n Simple_repeat Simple_repeat 1 26 0 326 278 149 47 chr4 133058868 133059123 -51229539 + L1ME LINE L1 5523 5803 -318 24 0 0 0 chr4 133059180 133059204 -51229458 + AT_rich Low_complexity Low_complexity 1 24 0 269 244 0 61 chr4 133059618 133059700 -51228962 - L2 LINE L2 0 3313 3237 2740 132 14 2 chr4 133060217 133060640 -51228022 + MSTA LTR MaLR 1 428 0 7343 150 52 36 chr4 133061337 133062672 -51225990 + MSTA-int LTR MaLR 224 1580 0 1432 196 61 25 chr4 133062672 133063034 -51225628 + MSTA LTR MaLR 1 375 0 989 317 41 6 chr4 133063083 133063449 -51225213 + MER77 LTR ERV1 227 605 0 1471 273 81 10 chr4 133065242 133065821 -51222841 - MER20B DNA MER1_type -3 780 161 24 53 0 0 chr4 133066401 133066439 -51222223 + AT_rich Low_complexity Low_complexity 1 38 0 1259 193 55 29 chr4 133066439 133066714 -51221948 - AluJo SINE Alu -30 282 1 1897 233 23 47 chr4 133067328 133067860 -51220802 + MLT1F LTR MaLR 5 523 -19 720 90 0 25 chr4 133069438 133069560 -51219102 + (GGGAA)n Simple_repeat Simple_repeat 4 122 0 374 257 7 52 chr4 133069645 133069781 -51218881 - L1MCc LINE L1 -6273 150 21 5341 129 32 26 chr4 133070202 133071098 -51217564 - MER49 LTR ERV1 -21 902 1 23 0 0 0 chr4 133071574 133071597 -51217065 + AT_rich Low_complexity Low_complexity 1 23 0 482 279 67 39 chr4 133072266 133072445 -51216217 - MIR SINE MIR -1 261 78 1415 204 0 29 chr4 133072601 133072927 -51215735 + AluJb SINE Alu 14 331 0 30 0 0 0 chr4 133073386 133073416 -51215246 + AT_rich Low_complexity Low_complexity 1 30 0 408 270 20 23 chr4 133073832 133074008 -51214654 + MIR SINE MIR 36 209 -53 25 31 0 0 chr4 133074198 133074230 -51214432 + AT_rich Low_complexity Low_complexity 1 32 0 796 257 44 0 chr4 133074379 133074585 -51214077 - MER20B DNA MER1_type -4 215 1 23 54 0 0 chr4 133075790 133075827 -51212835 + AT_rich Low_complexity Low_complexity 1 37 0 3838 165 8 25 chr4 133076838 133077570 -51211092 + L1MC1 LINE L1 5612 6331 -2 332 229 146 0 chr4 133077581 133077725 -51210937 - MER114 LTR ERV -128 520 356 33 25 0 0 chr4 133078041 133078081 -51210581 + AT_rich Low_complexity Low_complexity 1 40 0 217 173 53 27 chr4 133078238 133078313 -51210349 + (TTATA)n Simple_repeat Simple_repeat 2 78 0 1998 261 36 22 chr4 133078376 133079105 -51209557 - L1MCa LINE L1 -3073 3353 2615 899 248 20 16 chr4 133079104 133079354 -51209308 - L1MCa LINE L1 -6147 279 29 * 2166 115 0 3 chr4 133079493 133079789 -51208873 - AluSc SINE Alu -14 295 1 43 47 0 0 chr4 133079825 133079889 -51208773 + AT_rich Low_complexity Low_complexity 1 64 0 21 57 0 0 chr4 133080272 133080307 -51208355 + AT_rich Low_complexity Low_complexity 1 35 0 393 297 123 39 chr4 133081384 133081717 -51206945 + HAL1b LINE L1 974 1334 -14 846 246 116 13 chr4 133082253 133082797 -51205865 + MLT1D LTR MaLR 1 505 0 1241 253 72 41 chr4 133083351 133083837 -51204825 - MLT1D LTR MaLR 0 505 5 327 274 29 0 chr4 133083839 133083941 -51204721 - LTR16B LTR ERVL -2 462 358 498 262 26 73 chr4 133084080 133084350 -51204312 - HERV16 LTR ERVL -1306 3690 3468 322 286 87 48 chr4 133084662 133084893 -51203769 - HERV16 LTR ERVL -4754 242 3 2160 133 0 0 chr4 133084962 133085263 -51203399 + AluSq SINE Alu 1 301 -12 670 321 49 38 chr4 133085269 133085636 -51203026 - LTR16B LTR ERVL -93 371 1 819 273 74 42 chr4 133085646 133086079 -51202583 - L1M4 LINE L1 -2282 4100 3654 935 245 119 75 chr4 133086115 133086260 -51202402 - L1M4 LINE L1 -2823 3559 3422 213 39 0 0 chr4 133086260 133086286 -51202376 + (TTA)n Simple_repeat Simple_repeat 2 27 0 935 245 119 75 chr4 133086286 133086797 -51201865 - L1M4 LINE L1 -2960 3422 2874 4881 132 82 16 chr4 133086826 133087173 -51201489 - Tigger3b DNA MER2_type -1797 1231 908 236 30 30 0 chr4 133087173 133087206 -51201456 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 4881 132 82 16 chr4 133087206 133087738 -51200924 - Tigger3b DNA MER2_type -2120 908 294 241 250 0 0 chr4 133087822 133087878 -51200784 + (TATATG)n Simple_repeat Simple_repeat 6 61 0 31 88 0 0 chr4 133088346 133088426 -51200236 + AT_rich Low_complexity Low_complexity 1 80 0 22 0 0 0 chr4 133089434 133089456 -51199206 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 133089526 133089547 -51199115 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 133091074 133091097 -51197565 + AT_rich Low_complexity Low_complexity 1 23 0 229 283 0 0 chr4 133092099 133092159 -51196503 + (CATATA)n Simple_repeat Simple_repeat 1 60 0 7078 54 6 0 chr4 133092634 133093677 -51194985 + L1PA7 LINE L1 5106 6153 -1 1615 150 90 31 chr4 133093805 133094159 -51194503 - THE1C LTR MaLR 0 375 1 8740 146 31 33 chr4 133094159 133095739 -51192923 - THE1C-int LTR MaLR 0 1580 4 1607 159 91 29 chr4 133095745 133096096 -51192566 - THE1C LTR MaLR -2 373 1 2406 175 16 9 chr4 133096260 133096705 -51191957 + MER83 LTR ERV1 1 448 0 24 0 0 0 chr4 133096948 133096972 -51191690 + AT_rich Low_complexity Low_complexity 1 24 0 1704 179 0 3 chr4 133097248 133097538 -51191124 - AluJo SINE Alu -23 289 1 1320 185 37 30 chr4 133098040 133098310 -51190352 - AluJo SINE Alu -18 294 23 996 293 44 29 chr4 133098350 133098897 -51189765 - L1M4 LINE L1 -4702 1682 1128 23 33 0 0 chr4 133098987 133099017 -51189645 + AT_rich Low_complexity Low_complexity 1 30 0 2105 241 15 4 chr4 133099075 133099532 -51189130 - MER77 LTR ERV1 0 605 144 1004 258 5 0 chr4 133099516 133099725 -51188937 - MER77 LTR ERV1 -395 210 1 * 589 62 0 0 chr4 133100393 133100473 -51188189 - L1PA2 LINE L1 -2 6153 6074 474 36 0 0 chr4 133100473 133100528 -51188134 + L1P2 LINE L1 5618 5672 -482 1588 173 40 4 chr4 133100620 133100897 -51187765 + AluSx SINE Alu 1 287 -25 275 171 40 66 chr4 133100918 133100994 -51187668 - L1MDa LINE L1 -4608 1932 1859 331 191 11 11 chr4 133100996 133101085 -51187577 + CT-rich Low_complexity Low_complexity 5 93 0 522 143 0 0 chr4 133101190 133101281 -51187381 + (TCC)n Simple_repeat Simple_repeat 3 93 0 323 234 59 86 chr4 133101395 133101671 -51186991 - L1M4 LINE L1 -4178 2779 2623 22 35 0 0 chr4 133101728 133101757 -51186905 + AT_rich Low_complexity Low_complexity 1 29 0 1082 246 91 60 chr4 133102014 133103102 -51185560 - L1M4 LINE L1 -4536 2423 1190 1576 330 24 38 chr4 133103632 133104372 -51184290 - L1M4 LINE L1 -5981 878 149 21 57 0 0 chr4 133104395 133104430 -51184232 + AT_rich Low_complexity Low_complexity 1 35 0 791 151 0 0 chr4 133104513 133104632 -51184030 + MSTB LTR MaLR 1 119 -307 1730 146 89 17 chr4 133104633 133104983 -51183679 + THE1C LTR MaLR 1 375 0 1708 129 49 5 chr4 133104983 133105400 -51183262 + THE1C-int LTR MaLR 1 363 -1217 6435 71 58 2 chr4 133105400 133107097 -51181565 + L1PA2 LINE L1 4455 6155 0 3907 145 2 7 chr4 133107097 133107697 -51180965 + THE1C-int LTR MaLR 851 1447 -133 821 172 51 13 chr4 133107738 133107895 -51180767 + THE1C LTR MaLR 2 164 -211 181 29 59 29 chr4 133107895 133107929 -51180733 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 42233 36 24 1 chr4 133107929 133113923 -51174739 - L1PA2 LINE L1 -24 6131 1 1101 142 76 24 chr4 133113923 133114134 -51174528 + THE1C LTR MaLR 154 375 0 1427 181 30 50 chr4 133114146 133114444 -51174218 + MSTB LTR MaLR 135 426 0 445 298 119 57 chr4 133114461 133114797 -51173865 - L1MDa LINE L1 -4713 1827 1471 2039 130 3 7 chr4 133114986 133115293 -51173369 + AluY SINE Alu 3 308 -3 971 217 94 38 chr4 133115309 133115681 -51172981 - MLT1A1 LTR MaLR -2 363 36 186 43 0 0 chr4 133115884 133115907 -51172755 + (T)n Simple_repeat Simple_repeat 1 23 0 202 164 33 33 chr4 133116369 133116430 -51172232 + (TTTAA)n Simple_repeat Simple_repeat 3 63 0 461 294 56 25 chr4 133116491 133116688 -51171974 + MIR SINE MIR 59 261 -1 30 27 0 0 chr4 133117703 133117740 -51170922 + AT_rich Low_complexity Low_complexity 1 37 0 24 32 0 0 chr4 133118122 133118153 -51170509 + AT_rich Low_complexity Low_complexity 1 31 0 835 211 5 5 chr4 133118445 133118635 -51170027 - L1P LINE L1 -1010 5136 4947 * 1365 145 18 4 chr4 133118628 133118910 -51169752 + L1PA16 LINE L1 5837 6157 -9 315 0 0 0 chr4 133119376 133119411 -51169251 + (TG)n Simple_repeat Simple_repeat 2 36 0 24 91 0 0 chr4 133119547 133119613 -51169049 + AT_rich Low_complexity Low_complexity 1 66 0 22 35 0 0 chr4 133121410 133121439 -51167223 + AT_rich Low_complexity Low_complexity 1 29 0 215 229 66 33 chr4 133121523 133121584 -51167078 + MIR SINE MIR 200 262 0 402 239 47 127 chr4 133122030 133122352 -51166310 + MLT1I LTR MaLR 95 390 -19 201 259 17 0 chr4 133122510 133122568 -51166094 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 21 0 0 0 chr4 133122722 133122743 -51165919 + AT_rich Low_complexity Low_complexity 1 21 0 430 288 67 48 chr4 133123492 133123699 -51164963 + HAL1b LINE L1 424 641 -707 1874 150 3 3 chr4 133123699 133123985 -51164677 + AluSx SINE Alu 1 286 -26 430 288 67 48 chr4 133123985 133124093 -51164569 + HAL1b LINE L1 641 745 -603 212 220 20 0 chr4 133124194 133124244 -51164418 + (TAA)n Simple_repeat Simple_repeat 3 53 0 278 250 12 0 chr4 133124287 133124367 -51164295 + MER53 DNA DNA 105 185 -4 407 167 13 0 chr4 133124818 133124896 -51163766 + L1MC1 LINE L1 6249 6327 -6 780 232 93 45 chr4 133124923 133125372 -51163290 - Charlie2 DNA MER1_type -221 2641 2171 245 312 108 0 chr4 133125397 133125554 -51163108 - Charlie2b DNA MER1_type -1540 1242 1069 867 306 125 14 chr4 133125568 133126087 -51162575 - Charlie2b DNA MER1_type -2258 604 28 2632 111 14 3 chr4 133126088 133126456 -51162206 - MLT2A2 LTR ERVL -81 372 1 22 35 0 0 chr4 133128334 133128363 -51160299 + AT_rich Low_complexity Low_complexity 1 29 0 975 213 47 53 chr4 133129059 133129360 -51159302 - LTR56 LTR ERV1 -138 307 9 269 200 43 70 chr4 133129434 133129549 -51159113 + L1MC4 LINE L1 6592 6703 -1339 2222 153 5 16 chr4 133130031 133130410 -51158252 - THE1C LTR MaLR 0 375 1 9099 140 52 7 chr4 133130410 133131492 -51157170 - THE1C-int LTR MaLR 0 1580 409 228 35 0 0 chr4 133131492 133131521 -51157141 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 9099 140 52 7 chr4 133131521 133131950 -51156712 - THE1C-int LTR MaLR -1171 409 1 2233 137 11 24 chr4 133131950 133132330 -51156332 - THE1C LTR MaLR 0 375 1 1873 155 0 0 chr4 133132444 133132756 -51155906 + AluSg SINE Alu 1 312 0 555 365 4 26 chr4 133132994 133133224 -51155438 - MIR SINE MIR -1 261 37 1865 164 0 19 chr4 133133433 133133743 -51154919 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr4 133133743 133133765 -51154897 + AT_rich Low_complexity Low_complexity 1 22 0 7395 39 0 6 chr4 133133765 133134692 -51153970 - L1PA4 LINE L1 -3 6152 5227 596 210 7 43 chr4 133134960 133135098 -51153564 - FLAM_A SINE Alu 0 133 1 1562 274 88 33 chr4 133135226 133136180 -51152482 - L1MC4 LINE L1 -152 7890 6723 298 299 104 9 chr4 133136182 133136393 -51152269 - L1MC4 LINE L1 -1350 6692 6462 1421 142 78 72 chr4 133136543 133136873 -51151789 + THE1C LTR MaLR 1 335 -40 1990 139 3 7 chr4 133136873 133137174 -51151488 - AluSx SINE Alu -12 300 1 1421 142 78 72 chr4 133137174 133137216 -51151446 + THE1C LTR MaLR 335 375 0 561 287 69 20 chr4 133137958 133138160 -51150502 - MIR SINE MIR -6 256 45 23 33 0 0 chr4 133139941 133139971 -51148691 + AT_rich Low_complexity Low_complexity 1 30 0 55 16 0 0 chr4 133140225 133140287 -51148375 + AT_rich Low_complexity Low_complexity 1 62 0 4023 257 88 39 chr4 133140458 133143156 -51145506 + L1M4 LINE L1 24 2885 -3759 310 224 24 12 chr4 133193193 133193278 -51095384 + MIR SINE MIR 176 261 -1 690 210 14 7 chr4 133194583 133194726 -51093936 + AluJb SINE Alu 143 286 -26 21 0 0 0 chr4 133194726 133194747 -51093915 + AT_rich Low_complexity Low_complexity 1 21 0 279 303 9 114 chr4 133194747 133194958 -51093704 - LTR67 LTR ERVL -367 190 2 544 240 33 22 chr4 133195182 133195365 -51093297 + L1MC5 LINE L1 7732 7916 -45 280 208 0 0 chr4 133195751 133195804 -51092858 + L1M4 LINE L1 3473 3525 -3119 326 203 53 4 chr4 133196595 133196705 -51091957 - L1MC4 LINE L1 -1339 6983 1995 200 175 75 0 chr4 133196747 133196787 -51091875 - L2 LINE L2 -10 3303 3261 2729 169 48 8 chr4 133196865 133197368 -51091294 + L1MB2 LINE L1 5444 5966 -205 6490 166 56 7 chr4 133197476 133198885 -51089777 + L1PBa LINE L1 1628 3106 -3756 25 0 0 0 chr4 133199876 133199901 -51088761 + AT_rich Low_complexity Low_complexity 1 25 0 2079 190 40 107 chr4 133201693 133202419 -51086243 + L1M2c LINE L1 1387 2063 -4726 1306 144 5 5 chr4 133202521 133202722 -51085940 + AluSc SINE Alu 99 299 -10 1350 216 10 80 chr4 133202740 133203142 -51085520 - MLT1A2 LTR MaLR 0 374 1 275 280 0 0 chr4 133203336 133203411 -51085251 + (CATATA)n Simple_repeat Simple_repeat 4 78 0 23 54 0 0 chr4 133203421 133203458 -51085204 + AT_rich Low_complexity Low_complexity 1 37 0 26 50 0 0 chr4 133203571 133203611 -51085051 + AT_rich Low_complexity Low_complexity 1 40 0 290 316 21 0 chr4 133203746 133203841 -51084821 + MLT1J2 LTR MaLR 33 129 -321 375 307 83 63 chr4 133203882 133204328 -51084334 + L1MC4a LINE L1 5642 6096 -1712 2187 99 0 3 chr4 133204332 133204643 -51084019 - AluSx SINE Alu 0 310 1 37 23 0 0 chr4 133204711 133204755 -51083907 + AT_rich Low_complexity Low_complexity 1 44 0 4269 32 0 2 chr4 133205669 133206175 -51082487 - L1PA3 LINE L1 0 6155 5651 388 245 26 13 chr4 133206391 133206546 -51082116 + (TA)n Simple_repeat Simple_repeat 2 158 0 301 321 22 67 chr4 133206689 133206913 -51081749 - MLT1H LTR MaLR -290 259 46 387 364 78 37 chr4 133207470 133208121 -51080541 - L2 LINE L2 -776 2538 1861 22 35 0 0 chr4 133209137 133209166 -51079496 + AT_rich Low_complexity Low_complexity 1 29 0 247 190 35 0 chr4 133209242 133209300 -51079362 + (TTTA)n Simple_repeat Simple_repeat 1 60 0 3668 154 59 73 chr4 133209420 133209580 -51079082 - L1MA8 LINE L1 -5 6286 6125 255 61 0 0 chr4 133209580 133209613 -51079049 + (TA)n Simple_repeat Simple_repeat 1 33 0 3668 154 59 73 chr4 133209613 133210313 -51078349 - L1MA8 LINE L1 -166 6125 5438 21 71 0 0 chr4 133210602 133210644 -51078018 + AT_rich Low_complexity Low_complexity 1 42 0 1635 173 3 38 chr4 133210646 133210964 -51077698 + AluJo SINE Alu 5 311 -1 1776 168 3 3 chr4 133211065 133211351 -51077311 + AluJb SINE Alu 11 296 -16 24 32 0 0 chr4 133211669 133211700 -51076962 + AT_rich Low_complexity Low_complexity 1 31 0 252 293 86 66 chr4 133212509 133212707 -51075955 - MLT1H LTR MaLR -249 300 99 201 147 0 0 chr4 133213576 133213610 -51075052 + (TTTTC)n Simple_repeat Simple_repeat 1 34 0 23 33 0 0 chr4 133214077 133214107 -51074555 + AT_rich Low_complexity Low_complexity 1 30 0 2400 80 0 10 chr4 133215409 133215721 -51072941 - AluSc SINE Alu 0 309 1 315 344 53 42 chr4 133216033 133216295 -51072367 - HAL1b LINE L1 -673 675 411 192 77 0 0 chr4 133216870 133216896 -51071766 + (TA)n Simple_repeat Simple_repeat 2 27 0 2053 115 3 0 chr4 133216896 133217182 -51071480 - AluSx SINE Alu -23 289 3 536 251 49 66 chr4 133217666 133217849 -51070813 + MIR SINE MIR 5 184 -78 21 36 0 0 chr4 133218452 133218480 -51070182 + AT_rich Low_complexity Low_complexity 1 28 0 333 47 0 0 chr4 133219348 133219391 -51069271 + (CA)n Simple_repeat Simple_repeat 2 44 0 549 307 136 29 chr4 133220116 133220696 -51067966 - L1ME3 LINE L1 -205 5957 5316 468 276 103 30 chr4 133220878 133221248 -51067414 - L1ME3 LINE L1 -1942 4204 3808 822 262 136 54 chr4 133221372 133221889 -51066773 - MLT1F1 LTR MaLR -7 560 1 22 35 0 0 chr4 133221953 133221982 -51066680 + AT_rich Low_complexity Low_complexity 1 29 0 387 255 87 26 chr4 133222154 133222385 -51066277 - L1ME3 LINE L1 -3103 3043 2799 2205 169 30 16 chr4 133222512 133222938 -51065724 - MSTB1 LTR MaLR 0 432 1 1017 71 143 7 chr4 133223096 133223250 -51065412 + MLT2A1 LTR ERVL 270 444 0 1836 230 47 96 chr4 133223288 133223989 -51064673 - HERVL68 LTR ERVL -225 2812 2146 1950 146 0 0 chr4 133224052 133224332 -51064330 - AluSx SINE Alu -32 280 1 682 235 44 6 chr4 133224335 133224518 -51064144 - HERVL68 LTR ERVL -926 2111 1922 243 293 120 8 chr4 133225594 133225727 -51062935 + L1MEc LINE L1 1598 1745 -4651 1645 188 10 7 chr4 133225733 133226042 -51062620 + AluJb SINE Alu 1 310 -2 704 208 112 43 chr4 133226073 133226376 -51062286 - MER33 DNA MER1_type 0 324 1 488 274 68 34 chr4 133226378 133226699 -51061963 + L1MEc LINE L1 2230 2561 -3654 42 36 0 0 chr4 133226755 133226811 -51061851 + AT_rich Low_complexity Low_complexity 1 56 0 23 0 0 0 chr4 133227273 133227296 -51061366 + AT_rich Low_complexity Low_complexity 1 23 0 203 183 17 33 chr4 133227296 133227356 -51061306 + A-rich Low_complexity Low_complexity 1 59 0 23 0 0 0 chr4 133227842 133227865 -51060797 + AT_rich Low_complexity Low_complexity 1 23 0 301 248 91 33 chr4 133228005 133228126 -51060536 - MIR SINE MIR -52 210 83 1684 150 150 21 chr4 133229776 133230155 -51058507 - MSTA LTR MaLR 0 428 1 633 305 25 10 chr4 133230636 133230833 -51057829 + MIR SINE MIR 23 222 -40 301 336 137 0 chr4 133230906 133231037 -51057625 + MIR SINE MIR 6 154 -108 24 53 0 0 chr4 133231680 133231718 -51056944 + AT_rich Low_complexity Low_complexity 1 38 0 2075 139 7 3 chr4 133231792 133232101 -51056561 + AluSq SINE Alu 1 310 -3 29 0 0 0 chr4 133232155 133232184 -51056478 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr4 133232441 133232475 -51056187 + AT_rich Low_complexity Low_complexity 1 34 0 897 81 16 0 chr4 133232478 133232601 -51056061 - L1PB1 LINE L1 -9 6142 6018 25 0 0 0 chr4 133234076 133234101 -51054561 + AT_rich Low_complexity Low_complexity 1 25 0 243 230 18 35 chr4 133234363 133234476 -51054186 + (TTATA)n Simple_repeat Simple_repeat 1 111 0 572 258 0 68 chr4 133234494 133234684 -51053978 - MLT1E LTR MaLR 0 593 417 2611 263 73 35 chr4 133234684 133235625 -51053037 + L1ME LINE L1 29 1005 -5379 3710 264 15 18 chr4 133235788 133236949 -51051713 + L1ME LINE L1 4247 5403 -979 339 136 0 0 chr4 133236945 133237011 -51051651 - L1M LINE L1 -984 5320 5255 * 4578 115 12 8 chr4 133237011 133237089 -51051573 - L1MA1 LINE L1 -244 6058 5982 1765 113 15 88 chr4 133237089 133237417 -51051245 - AluSq SINE Alu -9 304 1 4578 115 12 8 chr4 133237417 133238071 -51050591 - L1MA1 LINE L1 -320 5982 5323 351 106 0 61 chr4 133238071 133238137 -51050525 + L1MA1 LINE L1 6236 6297 -5 23 0 0 0 chr4 133238138 133238161 -51050501 + AT_rich Low_complexity Low_complexity 1 23 0 746 186 39 70 chr4 133238161 133238340 -51050322 + L1ME LINE L1 5388 5558 -824 906 229 0 0 chr4 133238340 133238506 -51050156 + FRAM SINE Alu 1 166 0 746 186 39 70 chr4 133238506 133238584 -51050078 + L1ME LINE L1 5558 5637 -745 533 219 47 16 chr4 133238686 133238814 -51049848 - MER76 LTR ERV -96 592 461 245 127 14 70 chr4 133239985 133240056 -51048606 + (TATAA)n Simple_repeat Simple_repeat 3 69 0 350 309 18 30 chr4 133240634 133240802 -51047860 + L1ME LINE L1 5759 5924 -474 243 0 0 0 chr4 133240868 133240895 -51047767 + (CA)n Simple_repeat Simple_repeat 2 28 0 2238 93 0 10 chr4 133241753 133242054 -51046608 - AluSc SINE Alu -11 298 1 1484 206 0 21 chr4 133242789 133243075 -51045587 + AluJb SINE Alu 1 280 -32 180 0 0 0 chr4 133243077 133243097 -51045565 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 220 387 78 14 chr4 133243549 133243691 -51044971 + L2 LINE L2 3122 3272 0 1893 169 3 52 chr4 133244186 133244571 -51044091 - MLT1B LTR MaLR -2 388 23 225 178 0 0 chr4 133244718 133244763 -51043899 - L1MC4 LINE L1 -1339 6703 6659 1553 116 113 57 chr4 133244781 133245082 -51043580 + MER7A DNA MER2_type 31 346 0 27 62 0 0 chr4 133245163 133245211 -51043451 + AT_rich Low_complexity Low_complexity 1 48 0 239 286 0 14 chr4 133245610 133245680 -51042982 + CT-rich Low_complexity Low_complexity 2 70 0 2081 115 23 0 chr4 133245722 133246027 -51042635 + AluSp SINE Alu 1 312 -1 1530 128 0 82 chr4 133246596 133246877 -51041785 - AluSx SINE Alu -11 301 44 2381 83 0 6 chr4 133246946 133247258 -51041404 - AluY SINE Alu -1 310 1 2561 94 31 0 chr4 133247982 133248364 -51040298 + L1MA1 LINE L1 5904 6297 -5 195 42 0 0 chr4 133248472 133248496 -51040166 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 1319 130 23 0 chr4 133248640 133248855 -51039807 + L1PA15 LINE L1 5938 6157 -8 882 173 16 48 chr4 133251205 133251453 -51037209 - Charlie5 DNA MER1_type -27 2585 2346 22 70 0 0 chr4 133251609 133251652 -51037010 + AT_rich Low_complexity Low_complexity 1 43 0 3548 100 46 4 chr4 133252788 133253288 -51035374 + LTR17 LTR ERV1 260 780 0 5392 72 6 22 chr4 133253288 133254005 -51034657 + HERV17 LTR ERV1 1 705 -7921 9410 72 9 4 chr4 133254195 133255434 -51033228 + HERV17 LTR ERV1 763 2007 -6619 * 26234 55 11 1 chr4 133255426 133258831 -51029831 + HERV17 LTR ERV1 2430 5902 -2724 1289 68 0 0 chr4 133258822 133258985 -51029677 + HERV17 LTR ERV1 6985 7147 -1479 * 309 51 0 0 chr4 133258981 133259020 -51029642 + HERV17 LTR ERV1 7510 7548 -1078 * 2326 76 0 0 chr4 133259011 133259302 -51029360 + HERV17 LTR ERV1 8336 8626 0 2342 92 0 6 chr4 133259302 133259628 -51029034 + LTR17 LTR ERV1 1 324 -456 23 0 0 0 chr4 133259702 133259725 -51028937 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr4 133260181 133260209 -51028453 + AT_rich Low_complexity Low_complexity 1 28 0 2205 123 0 0 chr4 133261690 133261990 -51026672 + AluSx SINE Alu 1 300 -12 21 57 0 0 chr4 133262090 133262125 -51026537 + AT_rich Low_complexity Low_complexity 1 35 0 309 356 101 37 chr4 133262833 133263397 -51025265 + L1M4 LINE L1 3248 3847 -2299 240 241 35 83 chr4 133263487 133263632 -51025030 + L1MCc LINE L1 56 193 -6230 2134 274 33 19 chr4 133264077 133264654 -51024008 + L1M3b LINE L1 507 1091 -5688 12566 215 26 25 chr4 133264656 133264823 -51023839 + L1M3b LINE L1 2762 2927 -3921 4303 87 2 3 chr4 133264823 133265409 -51023253 + L1PA6 LINE L1 5569 6153 -1 12566 215 26 25 chr4 133265409 133267986 -51020676 + L1M3b LINE L1 2927 5517 -1331 2123 174 14 34 chr4 133267986 133268428 -51020234 + Tigger2a DNA MER2_type 2 434 0 12566 215 26 25 chr4 133268428 133268948 -51019714 + L1M3b LINE L1 5517 6035 -813 2648 10 0 0 chr4 133268948 133269237 -51019425 + AluY SINE Alu 1 289 -22 310 343 0 0 chr4 133270048 133270156 -51018506 + MIR SINE MIR 47 154 -108 9455 205 16 94 chr4 133270171 133274082 -51014580 + L1M2a LINE L1 6 3576 -3591 1930 149 16 25 chr4 133274082 133274397 -51014265 + AluSx SINE Alu 1 312 0 9455 205 16 94 chr4 133274397 133274729 -51013933 + L1M2a LINE L1 3576 3932 -3235 1885 155 117 13 chr4 133274749 133275135 -51013527 - MSTA LTR MaLR -2 426 1 8645 152 16 55 chr4 133275135 133276630 -51012032 - MSTA-int LTR MaLR 0 1580 154 1762 150 87 0 chr4 133276630 133276917 -51011745 - AluSx SINE Alu 0 312 1 8645 152 16 55 chr4 133276917 133277064 -51011598 - MSTA-int LTR MaLR -1426 154 3 291 134 54 18 chr4 133277066 133277144 -51011518 - THE1C LTR MaLR 0 375 274 42428 33 22 1 chr4 133277144 133283132 -51005530 + L1PA2 LINE L1 38 6155 0 300 137 0 0 chr4 133283135 133283186 -51005476 + (A)n Simple_repeat Simple_repeat 1 51 0 1928 134 84 37 chr4 133283186 133283567 -51005095 - MSTA LTR MaLR -27 401 3 2514 210 87 33 chr4 133283569 133284413 -51004249 + L1M2a LINE L1 4041 4929 -2238 33 0 0 0 chr4 133286070 133286103 -51002559 + AT_rich Low_complexity Low_complexity 1 33 0 182 243 176 0 chr4 133286197 133286271 -51002391 - L2 LINE L2 0 3313 3227 195 69 0 0 chr4 133287816 133287845 -51000817 + (GA)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr4 133288806 133288830 -50999832 + AT_rich Low_complexity Low_complexity 1 24 0 211 325 172 0 chr4 133289024 133289175 -50999487 - MIR SINE MIR 0 262 86 189 314 124 19 chr4 133289224 133289329 -50999333 - L2 LINE L2 -1333 1981 1866 2043 186 13 5 chr4 133290130 133290516 -50998146 + MLT1B LTR MaLR 2 390 0 261 189 31 16 chr4 133290519 133290646 -50998016 + (TA)n Simple_repeat Simple_repeat 1 129 0 299 315 29 16 chr4 133290800 133290966 -50997696 + MIR SINE MIR 45 213 -49 259 234 11 9 chr4 133290970 133291048 -50997614 + MER52A LTR ERV1 1 60 -1218 7000 190 67 45 chr4 133291422 133292022 -50996640 + MER52A LTR ERV1 56 641 -1114 3419 124 10 4 chr4 133292022 133292530 -50996132 + MER9 LTR ERVK 1 511 0 7000 190 67 45 chr4 133292530 133293497 -50995165 + MER52A LTR ERV1 641 1755 0 25 0 0 0 chr4 133293669 133293694 -50994968 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr4 133293791 133293823 -50994839 + AT_rich Low_complexity Low_complexity 1 32 0 842 310 75 71 chr4 133294097 133294951 -50993711 + L1MEc LINE L1 270 1126 -4993 273 270 52 12 chr4 133295094 133295255 -50993407 + L1MEc LINE L1 1465 1629 -861 1797 263 72 35 chr4 133295594 133296755 -50991907 + L1ME2 LINE L1 4930 6129 -35 624 150 9 35 chr4 133297750 133297863 -50990799 + MLT1A2 LTR MaLR 4 113 -261 579 215 15 8 chr4 133297866 133297996 -50990666 + MLT1A2 LTR MaLR 244 374 0 25 31 0 0 chr4 133298168 133298200 -50990462 + AT_rich Low_complexity Low_complexity 1 32 0 625 300 99 27 chr4 133298592 133299005 -50989657 + L1ME3 LINE L1 5466 5906 -256 191 103 26 0 chr4 133299398 133299437 -50989225 + (TA)n Simple_repeat Simple_repeat 1 40 0 1782 195 60 35 chr4 133299941 133300392 -50988270 - MLT1C LTR MaLR -3 464 3 21 89 0 0 chr4 133300408 133300464 -50988198 + AT_rich Low_complexity Low_complexity 1 56 0 413 307 89 15 chr4 133301133 133301335 -50987327 - MIR SINE MIR -4 258 42 31 0 0 0 chr4 133301611 133301642 -50987020 + AT_rich Low_complexity Low_complexity 1 31 0 207 146 0 0 chr4 133302334 133302375 -50986287 + (CA)n Simple_repeat Simple_repeat 2 42 0 526 299 68 18 chr4 133303017 133303238 -50985424 - L2 LINE L2 -239 3074 2843 201 302 0 0 chr4 133303551 133303614 -50985048 - L2 LINE L2 -667 2647 2585 21 0 0 0 chr4 133303742 133303763 -50984899 + AT_rich Low_complexity Low_complexity 1 21 0 775 268 47 35 chr4 133304571 133304914 -50983748 + L1MEc LINE L1 2645 2991 -3138 1628 230 26 29 chr4 133304956 133305373 -50983289 + MLT1C LTR MaLR 6 421 -46 1233 297 119 31 chr4 133305429 133306194 -50982468 + L1M4 LINE L1 126 957 -5585 202 374 45 11 chr4 133306368 133306547 -50982115 - L2 LINE L2 -1202 2112 1928 278 268 239 0 chr4 133306961 133307099 -50981563 - LTR50 LTR ERVL -142 653 483 2211 103 0 3 chr4 133307143 133307444 -50981218 + AluSg SINE Alu 1 300 -10 860 153 7 0 chr4 133309040 133309184 -50979478 + L1MA5 LINE L1 5625 5769 -531 1350 130 10 0 chr4 133309184 133309384 -50979278 + AluSg/x SINE Alu 90 291 -21 21 0 0 0 chr4 133309384 133309405 -50979257 + AT_rich Low_complexity Low_complexity 1 21 0 2986 141 10 8 chr4 133309415 133309925 -50978737 + L1MA5 LINE L1 5773 6283 -17 1054 278 33 49 chr4 133309952 133310401 -50978261 - L1ME1 LINE L1 -6 6160 5719 1479 256 55 24 chr4 133310502 133311426 -50977236 - L1ME1 LINE L1 -430 5736 4784 1954 175 0 22 chr4 133311589 133311944 -50976718 - MER7A DNA MER2_type 0 346 2 276 91 91 0 chr4 133312102 133312146 -50976516 + MER41C LTR ERV1 279 326 -228 1932 109 0 0 chr4 133312150 133312434 -50976228 - L1PA8 LINE L1 -2 6170 5887 969 306 74 35 chr4 133312592 133313365 -50975297 - L2 LINE L2 -18 3295 2476 299 274 0 0 chr4 133313968 133314041 -50974621 + MLT1I LTR MaLR 73 145 -264 246 152 49 189 chr4 133314167 133314331 -50974331 + MLT1E LTR MaLR 402 593 0 646 229 7 21 chr4 133314678 133314822 -50973840 + MER5A DNA MER1_type 3 144 -45 258 296 34 0 chr4 133314857 133314945 -50973717 - MIR SINE MIR -141 121 31 * 273 290 185 30 chr4 133314941 133315141 -50973521 - MIR SINE MIR -21 241 11 245 192 0 41 chr4 133315521 133315594 -50973068 + (TTTG)n Simple_repeat Simple_repeat 2 71 0 251 268 104 37 chr4 133315612 133315776 -50972886 + Charlie8 DNA MER1_type 91 265 -2152 664 263 110 10 chr4 133315807 133316016 -50972646 + MIR SINE MIR 33 262 0 229 276 38 38 chr4 133316091 133316196 -50972466 - LTR33 LTR ERVL -2 519 415 24 53 0 0 chr4 133316440 133316478 -50972184 + AT_rich Low_complexity Low_complexity 1 38 0 1660 196 18 6 chr4 133316569 133316751 -50971911 + MSTD LTR MaLR 1 190 -206 2121 107 3 3 chr4 133316751 133317041 -50971621 + AluSg SINE Alu 1 290 -20 1660 196 18 6 chr4 133317041 133317195 -50971467 + MSTD LTR MaLR 190 341 -55 1840 215 94 4 chr4 133319183 133319694 -50968968 + L1MB4 LINE L1 5616 6172 -8 637 273 73 58 chr4 133319725 133320072 -50968590 - MLT1F1 LTR MaLR -174 393 39 7021 204 21 57 chr4 133320093 133320420 -50968242 + L1PB4 LINE L1 3472 3809 -2337 2266 114 0 0 chr4 133320420 133320728 -50967934 + AluSc SINE Alu 1 308 -1 7021 204 21 57 chr4 133320728 133322376 -50966286 + L1PB4 LINE L1 3809 5375 -771 3029 189 53 3 chr4 133322389 133323065 -50965597 + L1PB4 LINE L1 5447 6156 0 23 54 0 0 chr4 133323895 133323932 -50964730 + AT_rich Low_complexity Low_complexity 1 37 0 1622 177 66 118 chr4 133324162 133324711 -50963951 + MLT2B1 LTR ERVL 1 520 0 1304 159 15 127 chr4 133325318 133325657 -50963005 + AluJb SINE Alu 1 301 -1 621 274 99 77 chr4 133326048 133326686 -50961976 + MER31-int LTR ERV1 3403 4054 -882 2012 225 61 54 chr4 133326727 133326744 -50961918 - L1M4 LINE L1 -946 6011 5996 1743 221 14 9 chr4 133326744 133327183 -50961479 - L1MB8 LINE L1 -2 6176 5736 2012 225 61 54 chr4 133327183 133327871 -50960791 - L1M4 LINE L1 -961 5996 5301 635 269 36 78 chr4 133327868 133328176 -50960486 - L1M4 LINE L1 -5360 1499 1205 * 2370 214 44 33 chr4 133328418 133328937 -50959725 - MLT2B3 LTR ERVL -29 525 1 431 267 61 0 chr4 133331507 133331638 -50957024 - MIR SINE MIR -30 232 94 35 0 0 0 chr4 133331964 133331999 -50956663 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 133332033 133332054 -50956608 + AT_rich Low_complexity Low_complexity 1 21 0 298 294 206 12 chr4 133332615 133332775 -50955887 + MIR SINE MIR 2 192 -70 619 279 16 6 chr4 133333572 133333755 -50954907 + L1M3b LINE L1 11 195 -6086 * 4656 189 45 53 chr4 133333752 133335293 -50953369 + L1MA9 LINE L1 4744 6262 -50 267 222 42 0 chr4 133335292 133335364 -50953298 + L1 LINE L1 5087 5161 -985 * 27 29 0 0 chr4 133335417 133335451 -50953211 + AT_rich Low_complexity Low_complexity 1 34 0 3726 168 36 21 chr4 133335511 133336284 -50952378 + LTR1 LTR ERV1 1 785 0 186 133 0 0 chr4 133338021 133338051 -50950611 + (TA)n Simple_repeat Simple_repeat 2 31 0 192 77 0 0 chr4 133338108 133338134 -50950528 + (TA)n Simple_repeat Simple_repeat 2 27 0 2196 120 0 0 chr4 133338477 133338785 -50949877 - AluSg SINE Alu -2 308 1 1857 167 92 30 chr4 133338953 133339379 -50949283 - LTR10A LTR ERV1 -61 548 97 11522 143 31 42 chr4 133339417 133343325 -50945337 - Harlequin LTR ERV1 -4 6645 1045 2183 92 0 0 chr4 133343325 133343630 -50945032 - AluY SINE Alu 0 305 1 11522 143 31 42 chr4 133343630 133343967 -50944695 - Harlequin LTR ERV1 -5604 1045 706 355 292 71 0 chr4 133344091 133344245 -50944417 - Harlequin LTR ERV1 -6039 610 446 791 256 50 7 chr4 133344485 133344762 -50943900 - Harlequin LTR ERV1 -6360 289 1 1689 144 64 31 chr4 133344771 133345097 -50943565 - LTR10A LTR ERV1 -61 548 212 314 231 103 0 chr4 133345117 133345195 -50943467 - LTR10A LTR ERV1 -511 98 13 1985 120 3 7 chr4 133346004 133346295 -50942367 + AluSq SINE Alu 14 303 -10 31 26 0 0 chr4 133346560 133346598 -50942064 + AT_rich Low_complexity Low_complexity 1 38 0 224 255 236 0 chr4 133346704 133346810 -50941852 - MIR SINE MIR -54 208 78 1794 173 129 11 chr4 133347611 133347992 -50940670 - MSTA LTR MaLR -2 426 1 25 31 0 0 chr4 133348534 133348566 -50940096 + AT_rich Low_complexity Low_complexity 1 32 0 262 335 100 24 chr4 133349828 133349998 -50938664 - MER5A DNA MER1_type 0 189 7 21 36 0 0 chr4 133351065 133351093 -50937569 + AT_rich Low_complexity Low_complexity 1 28 0 1429 225 131 64 chr4 133351206 133351725 -50936937 + MLT2B3 LTR ERVL 1 554 0 3652 223 60 41 chr4 133352259 133353454 -50935208 - L1 LINE L1 -2374 3836 2619 1074 270 25 25 chr4 133353457 133353824 -50934838 - L1 LINE L1 -4870 1271 905 455 299 69 29 chr4 133354127 133354331 -50934331 - L1 LINE L1 -5679 452 241 235 250 14 0 chr4 133354325 133354397 -50934265 - L1MEc LINE L1 -3208 3007 2935 * 426 263 56 100 chr4 133354383 133355190 -50933472 - L1MEc LINE L1 -4736 1479 754 1810 301 132 32 chr4 133355190 133356234 -50932428 + L2 LINE L2 1876 3025 -288 1062 241 17 53 chr4 133356258 133356557 -50932105 - LTR40a LTR ERVL -231 288 1 373 280 64 50 chr4 133356667 133356885 -50931777 + L1ME LINE L1 5363 5583 -579 1493 178 70 7 chr4 133356887 133357173 -50931489 + AluJb SINE Alu 1 304 -8 1190 217 65 52 chr4 133357315 133357697 -50930965 - MLT1B LTR MaLR -3 387 1 21 89 0 0 chr4 133359588 133359644 -50929018 + AT_rich Low_complexity Low_complexity 1 56 0 29 28 0 0 chr4 133360141 133360177 -50928485 + AT_rich Low_complexity Low_complexity 1 36 0 22 56 0 0 chr4 133360197 133360233 -50928429 + AT_rich Low_complexity Low_complexity 1 36 0 240 336 23 16 chr4 133360276 133360404 -50928258 + MER94 DNA DNA 1 129 -5 24 91 0 0 chr4 133360448 133360514 -50928148 + AT_rich Low_complexity Low_complexity 1 66 0 430 174 10 20 chr4 133360566 133360664 -50927998 + L1MA5 LINE L1 6202 6298 -2 286 313 31 8 chr4 133361820 133361948 -50926714 - L1ME3A LINE L1 -21 6149 6019 1540 182 25 7 chr4 133362029 133362309 -50926353 - AluJb SINE Alu -27 285 1 4976 215 35 43 chr4 133362409 133364286 -50924376 + L1M2 LINE L1 2553 4414 -2434 595 67 11 11 chr4 133364286 133364376 -50924286 + (TTCC)n Simple_repeat Simple_repeat 4 93 0 2001 103 3 17 chr4 133364387 133364678 -50923984 - AluSg SINE Alu -23 287 1 1989 207 26 11 chr4 133364679 133365138 -50923524 + L1M2 LINE L1 4402 4867 -1981 914 216 0 28 chr4 133365299 133365512 -50923150 - MER3 DNA MER1_type -1 208 2 1024 174 37 11 chr4 133367120 133367310 -50921352 - MSTB LTR MaLR -6 420 226 3182 230 53 36 chr4 133367323 133367701 -50920961 - MSTB-int LTR MaLR -327 1253 883 267 44 200 0 chr4 133367701 133367746 -50920916 + MADE1 DNA Mariner 1 54 -26 3182 230 53 36 chr4 133367746 133368558 -50920104 - MSTB-int LTR MaLR -697 883 1 1739 188 38 83 chr4 133368558 133369004 -50919658 - MSTB LTR MaLR 0 426 1 1274 224 56 7 chr4 133369464 133369750 -50918912 + AluJo SINE Alu 5 304 -8 4793 148 56 27 chr4 133370641 133371567 -50917095 - Tigger3b DNA MER2_type -5 1226 274 431 240 20 0 chr4 133371565 133371665 -50916997 - Tigger3b DNA MER2_type -1129 102 1 * 31 44 0 0 chr4 133371683 133371728 -50916934 + AT_rich Low_complexity Low_complexity 1 45 0 1003 143 18 6 chr4 133371917 133372103 -50916559 + L1MA4 LINE L1 5293 5483 -743 3709 153 56 8 chr4 133372104 133372841 -50915821 + L1MA4 LINE L1 5528 6299 -1 254 303 14 14 chr4 133372982 133373127 -50915535 + (TA)n Simple_repeat Simple_repeat 2 146 0 203 260 0 0 chr4 133373709 133373759 -50914903 + (TAG)n Simple_repeat Simple_repeat 1 50 0 308 368 58 18 chr4 133375195 133375366 -50913296 + MIR SINE MIR 8 185 -77 191 236 69 56 chr4 133376986 133377058 -50911604 - MIR SINE MIR -34 228 156 2875 191 17 7 chr4 133378275 133378474 -50910188 + L1MB3 LINE L1 5585 5781 -402 1385 168 116 12 chr4 133378474 133378801 -50909861 - MER46B DNA MER2_type 0 236 1 2875 191 17 7 chr4 133378801 133379191 -50909471 + L1MB3 LINE L1 5781 6180 -3 7030 233 51 29 chr4 133379757 133380499 -50908163 - L1MC3 LINE L1 -59 8354 7630 1502 191 3 14 chr4 133380499 133380782 -50907880 - AluJb SINE Alu -30 282 3 7030 233 51 29 chr4 133380782 133382453 -50906209 - L1MC3 LINE L1 -783 7630 5854 2043 163 30 6 chr4 133382453 133382791 -50905871 + MER7A DNA MER2_type 1 344 -2 7030 233 51 29 chr4 133382791 133383191 -50905471 - L1MC3 LINE L1 -2559 5854 5464 1143 240 112 3 chr4 133383175 133383550 -50905112 - L1MC3 LINE L1 -5078 1486 1071 * 1794 235 21 19 chr4 133383666 133384134 -50904528 - L1MC3 LINE L1 -5012 1033 565 1153 216 12 12 chr4 133384134 133384375 -50904287 + L1MC/D LINE L1 188 428 -5998 747 272 34 37 chr4 133384361 133384714 -50903948 + L1MC/D LINE L1 4534 4885 -1541 * 2166 180 10 7 chr4 133384782 133385198 -50903464 + L1MC/D LINE L1 5621 6037 -576 277 122 143 0 chr4 133385195 133385244 -50903418 + L1MC1 LINE L1 6184 6239 -94 * 851 258 81 38 chr4 133385319 133385772 -50902890 + L1ME2 LINE L1 5677 6155 -9 229 208 143 0 chr4 133385854 133385931 -50902731 - HAL1 LINE L1 -1457 1050 963 2182 102 16 0 chr4 133386522 133386826 -50901836 - AluSx SINE Alu -3 309 1 6408 205 59 2 chr4 133388105 133389984 -50898678 + L1MA2 LINE L1 15 2133 -5432 2091 139 37 25 chr4 133389984 133390337 -50898325 + THE1B LTR MaLR 1 357 -7 7022 116 23 25 chr4 133390340 133390946 -50897716 + L1MA2 LINE L1 2131 2736 -4829 2860 13 0 0 chr4 133390946 133391264 -50897398 + AluYb8 SINE Alu 1 318 0 7022 116 23 25 chr4 133391264 133391879 -50896783 + L1MA2 LINE L1 2736 3350 -4215 18155 186 25 9 chr4 133391889 133394311 -50894351 + L1MA1 LINE L1 17 2508 -5057 1594 138 7 65 chr4 133394311 133394587 -50894075 + AluSx SINE Alu 36 295 -17 18155 186 25 9 chr4 133394587 133395575 -50893087 + L1MA1 LINE L1 2508 3479 -4086 2776 216 9 35 chr4 133395549 133396284 -50892378 + L1MA1 LINE L1 6036 6751 -814 * 375 163 22 65 chr4 133396287 133396379 -50892283 + AluY SINE Alu 210 297 -4 6055 132 16 8 chr4 133396381 133397351 -50891311 + L1MA1 LINE L1 6745 7721 0 13466 177 38 31 chr4 133397464 133399460 -50889202 + L1MA2 LINE L1 3331 5312 -2411 3628 109 4 6 chr4 133399460 133400000 -50888662 - L1PB1 LINE L1 -1 6150 5612 13466 177 38 31 chr4 133400000 133402309 -50886353 + L1MA2 LINE L1 5312 7669 -54 2297 95 0 3 chr4 133402309 133402613 -50886049 + AluY SINE Alu 1 303 -8 13466 177 38 31 chr4 133402613 133402662 -50886000 + L1MA2 LINE L1 7669 7716 -7 27 29 0 0 chr4 133402662 133402696 -50885966 + AT_rich Low_complexity Low_complexity 1 34 0 25 0 0 0 chr4 133402822 133402847 -50885815 + AT_rich Low_complexity Low_complexity 1 25 0 198 246 0 0 chr4 133402907 133402968 -50885694 + (TATATG)n Simple_repeat Simple_repeat 2 62 0 5727 101 17 5 chr4 133453193 133454261 -50834401 - L1P3 LINE L1 -581 5591 4517 236 113 283 0 chr4 133454473 133454526 -50834136 + MER104 DNA Tc2 49 116 -64 192 184 0 0 chr4 133454623 133454661 -50834001 - MIR SINE MIR -62 146 109 399 218 218 8 chr4 133455266 133455390 -50833272 - MIR SINE MIR -20 242 93 22 35 0 0 chr4 133456728 133456757 -50831905 + AT_rich Low_complexity Low_complexity 1 29 0 1981 184 6 0 chr4 133456795 133457149 -50831513 - L1MA4 LINE L1 -5 6295 5940 588 237 19 19 chr4 133457641 133457797 -50830865 - MLT1F1 LTR MaLR 0 567 412 1588 186 36 37 chr4 133457907 133458383 -50830279 + MLT2A2 LTR ERVL 73 554 0 253 264 0 0 chr4 133458383 133458455 -50830207 - L1M4 LINE L1 -2380 4468 4397 274 217 17 0 chr4 133458495 133458555 -50830107 + L1M4 LINE L1 3521 3581 -2565 866 254 103 0 chr4 133458561 133458910 -50829752 + L1M4 LINE L1 4771 5155 -991 5844 176 82 13 chr4 133458911 133460574 -50828088 - L1M4 LINE L1 -3492 3356 1580 213 159 0 0 chr4 133460724 133460768 -50827894 + T-rich Low_complexity Low_complexity 2 45 0 446 336 72 10 chr4 133460825 133461117 -50827545 + L1 LINE L1 3185 3494 -2652 229 274 16 0 chr4 133462594 133462656 -50826006 + (CATA)n Simple_repeat Simple_repeat 4 66 0 1276 213 31 7 chr4 133462786 133463077 -50825585 + L1PA16 LINE L1 5853 6150 -16 1339 175 13 45 chr4 133463135 133463605 -50825057 - L1M1 LINE L1 -743 5403 5072 634 323 18 22 chr4 133463705 133463928 -50824734 - MER70B LTR ERVL -263 315 94 207 0 0 0 chr4 133463941 133463964 -50824698 + (A)n Simple_repeat Simple_repeat 1 23 0 656 210 7 36 chr4 133463970 133464108 -50824554 - MER70A LTR ERVL -338 134 1 8201 239 64 28 chr4 133464110 133465402 -50823260 + L1M1 LINE L1 3043 4287 -3278 1974 125 0 24 chr4 133465402 133465698 -50822964 + AluSx SINE Alu 1 289 -23 8201 239 64 28 chr4 133465698 133467205 -50821457 + L1M1 LINE L1 4287 5947 -1618 180 315 14 14 chr4 133468358 133468431 -50820231 + MIR SINE MIR 65 137 -125 2732 239 27 38 chr4 133469275 133469985 -50818677 + L1PA15 LINE L1 1104 1805 -4982 1206 137 0 97 chr4 133469985 133470233 -50818429 - AluSg/x SINE Alu -8 304 81 406 171 0 0 chr4 133470333 133470403 -50818259 + AluJ/FRAM SINE Alu 227 296 -16 9086 220 69 57 chr4 133470403 133470815 -50817847 + L1PA15 LINE L1 1977 2383 -4414 385 101 29 0 chr4 133470815 133470884 -50817778 + AluSp/q SINE Alu 232 302 -1 9086 220 69 57 chr4 133470884 133473486 -50815176 + L1PA15 LINE L1 2383 5126 -1671 5750 130 10 0 chr4 133473486 133474792 -50813870 + L1PA15 LINE L1 5496 6811 -5 448 140 20 30 chr4 133475013 133475113 -50813549 - L1MA8 LINE L1 -1 6290 6192 24 53 0 0 chr4 133475144 133475182 -50813480 + AT_rich Low_complexity Low_complexity 1 38 0 305 380 81 33 chr4 133475201 133475949 -50812713 - L2 LINE L2 -32 3240 2455 6693 37 21 0 chr4 133476420 133477867 -50810795 + L1PA4 LINE L1 4667 6154 -1 363 354 47 47 chr4 133478224 133478276 -50810386 - L2 LINE L2 -2743 571 520 186 43 0 0 chr4 133478276 133478299 -50810363 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 363 354 47 47 chr4 133478299 133478500 -50810162 - L2 LINE L2 -2793 521 318 1876 195 106 53 chr4 133478767 133479275 -50809387 + MER101B LTR ERV1 1 535 -35 239 300 44 69 chr4 133480136 133480296 -50808366 - L2 LINE L2 -24 3289 3134 1691 242 49 13 chr4 133480470 133480921 -50807741 - MLT1C LTR MaLR 0 467 1 545 265 215 49 chr4 133481388 133481846 -50806816 + LTR27 LTR ERV1 1 1230 -18 186 345 9 62 chr4 133482085 133482198 -50806464 + MIR SINE MIR 156 262 0 297 75 0 0 chr4 133482223 133482263 -50806399 + (CA)n Simple_repeat Simple_repeat 1 40 0 27 49 0 0 chr4 133482351 133482392 -50806270 + AT_rich Low_complexity Low_complexity 1 41 0 1307 181 181 26 chr4 133483215 133483558 -50805104 - MSTD LTR MaLR 0 396 1 2261 104 0 0 chr4 133484251 133484548 -50804114 - AluSg SINE Alu -13 297 1 30 0 0 0 chr4 133485056 133485086 -50803576 + AT_rich Low_complexity Low_complexity 1 30 0 1655 204 22 45 chr4 133485507 133485910 -50802752 - MSTD LTR MaLR -2 394 1 226 386 8 16 chr4 133486088 133486215 -50802447 + MER5B DNA MER1_type 53 178 0 27 49 0 0 chr4 133486629 133486670 -50801992 + AT_rich Low_complexity Low_complexity 1 41 0 498 222 25 79 chr4 133487347 133487459 -50801203 + L1MCb LINE L1 1 99 -5946 1925 159 128 13 chr4 133487459 133487843 -50800819 - MSTA LTR MaLR 0 428 1 498 222 25 79 chr4 133487843 133487933 -50800729 + L1MCb LINE L1 99 192 -5853 966 83 0 0 chr4 133488035 133488155 -50800507 - AluSg SINE Alu -190 120 1 584 159 0 9 chr4 133488166 133488273 -50800389 + AluJo SINE Alu 124 229 -83 26 0 0 0 chr4 133489463 133489489 -50799173 + AT_rich Low_complexity Low_complexity 1 26 0 181 68 45 45 chr4 133490504 133490548 -50798114 + T-rich Low_complexity Low_complexity 4 47 0 22 0 0 0 chr4 133491701 133491723 -50796939 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr4 133493001 133493046 -50795616 + AT_rich Low_complexity Low_complexity 1 45 0 189 345 122 50 chr4 133493436 133493674 -50794988 - MIR SINE MIR -3 259 5 28 48 0 0 chr4 133493936 133493978 -50794684 + AT_rich Low_complexity Low_complexity 1 42 0 300 186 0 0 chr4 133496374 133496433 -50792229 + (CA)n Simple_repeat Simple_repeat 1 59 0 180 0 0 0 chr4 133497264 133497284 -50791378 + (A)n Simple_repeat Simple_repeat 1 20 0 193 0 61 30 chr4 133498507 133498540 -50790122 + (TAAAAA)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr4 133499495 133499519 -50789143 + AT_rich Low_complexity Low_complexity 1 24 0 5520 252 20 7 chr4 133501379 133502603 -50786059 - L1M2 LINE L1 -5607 1242 3 758 260 27 56 chr4 133502615 133502970 -50785692 + L1ME1 LINE L1 5829 6331 -3 509 343 110 38 chr4 133502973 133503556 -50785106 + L2 LINE L2 1716 2340 -974 264 328 114 48 chr4 133503573 133503863 -50784799 + L2 LINE L2 2658 2966 -348 195 367 28 28 chr4 133504071 133504180 -50784482 + L2 LINE L2 3165 3273 -40 374 333 38 9 chr4 133504262 133504475 -50784187 + MIR SINE MIR 6 224 -38 8309 191 38 2 chr4 133504761 133506354 -50782308 + MSTA-int LTR MaLR 1 1651 0 2434 145 41 7 chr4 133506354 133506768 -50781894 + MSTA LTR MaLR 1 428 0 2196 133 112 20 chr4 133507644 133508036 -50780626 - MSTA LTR MaLR 0 428 1 9048 179 16 5 chr4 133508036 133509669 -50778993 - MSTA-int LTR MaLR 0 1651 1 2040 151 120 5 chr4 133509669 133510053 -50778609 - MSTA LTR MaLR 0 428 1 595 335 107 28 chr4 133510053 133510522 -50778140 + MLT1H1 LTR MaLR 50 555 0 429 259 171 44 chr4 133510559 133510764 -50777898 + MIR SINE MIR 29 259 -3 21 0 0 0 chr4 133511361 133511382 -50777280 + AT_rich Low_complexity Low_complexity 1 21 0 925 261 56 74 chr4 133512698 133513243 -50775419 + MER39 LTR ERV1 9 707 0 465 323 81 11 chr4 133513403 133513589 -50775073 + ERVL LTR ERVL 3671 3869 -1895 1918 193 20 51 chr4 133514097 133514549 -50774113 + MER31A LTR ERV1 48 485 0 1677 199 20 121 chr4 133516652 133517204 -50771458 - MLT1D LTR MaLR -7 498 3 309 244 15 89 chr4 133517421 133517556 -50771106 + L1ME3A LINE L1 99 223 -5982 403 266 121 64 chr4 133518166 133518448 -50770214 + L1ME3A LINE L1 829 1126 -5079 1280 222 60 68 chr4 133519218 133519632 -50769030 + Charlie1a DNA MER1_type 69 479 -976 1516 289 103 19 chr4 133519762 133521036 -50767626 + L1ME3A LINE L1 2120 3464 -2751 1605 289 120 40 chr4 133521051 133521819 -50766843 + L1ME3A LINE L1 3495 4200 -2015 744 176 8 0 chr4 133521819 133521950 -50766712 + FLAM_C SINE Alu 1 132 -1 1605 289 120 40 chr4 133521950 133522827 -50765835 + L1ME3A LINE L1 4200 5271 -944 1510 181 49 3 chr4 133522830 133523118 -50765544 + AluJo SINE Alu 3 303 -9 1544 262 70 48 chr4 133523222 133524100 -50764562 + L1ME3A LINE L1 5339 6235 -4 1418 288 93 9 chr4 133524113 133524766 -50763896 - Zaphod DNA AcHobo -3198 833 126 3833 201 58 0 chr4 133524791 133525618 -50763044 - MER63C DNA MER1_type -7 923 49 267 161 161 0 chr4 133525641 133525703 -50762959 - MER63C DNA MER1_type -857 73 2 270 270 45 22 chr4 133525839 133525928 -50762734 - MIR SINE MIR -152 110 20 2162 90 0 10 chr4 133526557 133526846 -50761816 + AluSc SINE Alu 1 286 -23 180 0 0 0 chr4 133526862 133526882 -50761780 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 618 291 94 5 chr4 133526892 133527105 -50761557 + MIR SINE MIR 31 262 0 232 306 41 16 chr4 133527157 133527278 -50761384 + L1M4 LINE L1 4516 4639 -1507 22 0 0 0 chr4 133527452 133527474 -50761188 + AT_rich Low_complexity Low_complexity 1 22 0 397 326 49 33 chr4 133527887 133528132 -50760530 + MLT1K LTR MaLR 195 443 -145 617 333 108 8 chr4 133528407 133528807 -50759855 - MLT1J1 LTR MaLR -2 444 5 358 315 84 29 chr4 133529941 133530214 -50758448 + L1ME LINE L1 3279 3566 -2580 381 268 60 67 chr4 133530432 133530716 -50757946 + L1M4 LINE L1 3881 4162 -1984 439 329 74 31 chr4 133530781 133531198 -50757464 + L1M4 LINE L1 4252 4686 -1460 474 185 12 0 chr4 133531202 133531283 -50757379 - AluJ/FLAM SINE Alu -228 84 3 5976 96 15 0 chr4 133531294 133532452 -50756210 - L1PA13 LINE L1 0 6163 4995 739 286 80 47 chr4 133532836 133533477 -50755185 + L1ME LINE L1 3656 4317 -1829 235 188 21 0 chr4 133533593 133533641 -50755021 + (TA)n Simple_repeat Simple_repeat 2 50 0 421 328 85 8 chr4 133533646 133533893 -50754769 + L1ME LINE L1 5386 5651 -470 246 274 13 105 chr4 133533955 133534108 -50754554 - L2 LINE L2 -21 3292 3154 715 259 46 53 chr4 133534522 133534784 -50753878 - MIR SINE MIR -1 261 2 647 286 0 11 chr4 133536354 133536532 -50752130 + FAM SINE Alu 1 46 -3 205 267 0 67 chr4 133536591 133536651 -50752011 - L2 LINE L2 -9 3263 3208 1668 204 118 27 chr4 133537754 133538230 -50750432 + Charlie1b DNA MER1_type 1 519 -4 1501 162 87 39 chr4 133538807 133539165 -50749497 + THE1C LTR MaLR 1 375 0 22 56 0 0 chr4 133539175 133539211 -50749451 + AT_rich Low_complexity Low_complexity 1 36 0 269 148 37 37 chr4 133539498 133539539 -50749123 + (TAAA)n Simple_repeat Simple_repeat 4 44 -40 4430 168 18 43 chr4 133539539 133540098 -50748564 + L1MC1 LINE L1 5427 5955 -378 2333 86 0 16 chr4 133540098 133540412 -50748250 + AluSg SINE Alu 1 309 -1 4430 168 18 43 chr4 133540412 133540780 -50747882 + L1MC1 LINE L1 5955 6331 -2 269 148 37 37 chr4 133540780 133540796 -50747866 + (TAAA)n Simple_repeat Simple_repeat 44 59 -25 419 118 0 0 chr4 133540796 133540864 -50747798 + L1MC2 LINE L1 6266 6333 -11 269 148 37 37 chr4 133540864 133540886 -50747776 + (TAAA)n Simple_repeat Simple_repeat 58 84 0 26 64 0 0 chr4 133542222 133542269 -50746393 + AT_rich Low_complexity Low_complexity 1 47 0 320 225 65 65 chr4 133542869 133543007 -50745655 + MLT1L LTR MaLR 152 289 -326 21 71 0 0 chr4 133543280 133543322 -50745340 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr4 133543451 133543479 -50745183 + AT_rich Low_complexity Low_complexity 1 28 0 264 258 21 32 chr4 133543823 133543916 -50744746 + L1ME3A LINE L1 4114 4205 -1941 733 276 83 59 chr4 133544056 133545096 -50743566 + L1ME3A LINE L1 4433 5494 -668 696 269 97 15 chr4 133545173 133545504 -50743158 + L1ME3A LINE L1 5607 5964 -206 34 24 0 0 chr4 133546102 133546143 -50742519 + AT_rich Low_complexity Low_complexity 1 41 0 191 262 0 66 chr4 133546166 133546227 -50742435 - L2 LINE L2 -1038 2276 2220 21 57 0 0 chr4 133546729 133546764 -50741898 + AT_rich Low_complexity Low_complexity 1 35 0 2326 50 0 3 chr4 133548526 133548846 -50739816 + AluY SINE Alu 1 319 0 434 311 24 24 chr4 133549361 133549525 -50739137 + MIR3 SINE MIR 42 205 -3 663 293 145 16 chr4 133549660 133549887 -50738775 + L2 LINE L2 2969 3246 -67 213 39 0 0 chr4 133549887 133549913 -50738749 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 663 293 145 16 chr4 133549913 133549989 -50738673 + L2 LINE L2 3246 3311 -2 923 213 14 24 chr4 133550128 133550339 -50738323 + MER3 DNA MER1_type 1 209 0 278 319 80 65 chr4 133550343 133550619 -50738043 - L2 LINE L2 -527 2787 2508 22 0 0 0 chr4 133550761 133550783 -50737879 + AT_rich Low_complexity Low_complexity 1 22 0 380 20 0 20 chr4 133550949 133550957 -50737705 + (CA)n Simple_repeat Simple_repeat 1 56 0 380 20 0 20 chr4 133550957 133551007 -50737655 + (CA)n Simple_repeat Simple_repeat 2 50 0 22 70 0 0 chr4 133552221 133552264 -50736398 + AT_rich Low_complexity Low_complexity 1 43 0 2215 125 0 0 chr4 133552848 133553153 -50735509 + AluSx SINE Alu 2 306 -6 183 300 146 9 chr4 133553460 133553570 -50735092 + MIR SINE MIR 37 161 -101 274 259 67 77 chr4 133554053 133554384 -50734278 + L1ME3A LINE L1 5103 5424 -740 306 240 320 0 chr4 133554384 133554484 -50734178 + FLAM_A SINE Alu 1 132 -1 274 259 67 77 chr4 133554484 133554639 -50734023 + L1ME3A LINE L1 5424 5579 -585 294 300 50 118 chr4 133554773 133555153 -50733509 + L1ME3A LINE L1 5802 6155 -15 1032 227 94 85 chr4 133555198 133555656 -50733006 + MLT1C LTR MaLR 6 467 0 377 273 150 27 chr4 133555669 133555889 -50732773 + MIR SINE MIR 1 247 -15 525 330 69 25 chr4 133558538 133558986 -50729676 + MLT1J LTR MaLR 32 499 -12 22 0 0 0 chr4 133559337 133559359 -50729303 + AT_rich Low_complexity Low_complexity 1 22 0 2193 286 112 45 chr4 133560329 133562005 -50726657 + HAL1 LINE L1 618 2404 -103 21 0 0 0 chr4 133562566 133562587 -50726075 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr4 133563992 133564026 -50724636 + AT_rich Low_complexity Low_complexity 1 34 0 28 61 0 0 chr4 133564263 133564312 -50724350 + AT_rich Low_complexity Low_complexity 1 49 0 210 163 0 23 chr4 133564700 133564743 -50723919 + (TAAG)n Simple_repeat Simple_repeat 2 43 0 292 244 154 85 chr4 133565661 133565862 -50722800 + L2 LINE L2 3099 3313 0 2368 81 0 0 chr4 133566894 133567192 -50721470 + AluSg SINE Alu 1 298 -12 794 161 0 0 chr4 133567217 133567335 -50721327 + FLAM_C SINE Alu 1 118 -15 180 111 0 0 chr4 133568554 133568581 -50720081 + (CGGGGG)n Simple_repeat Simple_repeat 4 30 0 297 365 9 0 chr4 133571729 133571836 -50716826 - MIR SINE MIR -68 140 33 21 71 0 0 chr4 133574589 133574631 -50714031 + AT_rich Low_complexity Low_complexity 1 42 0 949 165 92 0 chr4 133575864 133576028 -50712634 + L1PB4 LINE L1 5965 6143 -13 22 0 0 0 chr4 133577622 133577644 -50711018 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr4 133577793 133577825 -50710837 + AT_rich Low_complexity Low_complexity 1 32 0 48 18 0 0 chr4 133578064 133578119 -50710543 + AT_rich Low_complexity Low_complexity 1 55 0 22 0 0 0 chr4 133580733 133580755 -50707907 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr4 133581104 133581128 -50707534 + AT_rich Low_complexity Low_complexity 1 24 0 584 218 6 0 chr4 133581294 133581468 -50707194 + (TA)n Simple_repeat Simple_repeat 2 176 0 2246 113 0 3 chr4 133582216 133582525 -50706137 - AluSq SINE Alu -5 308 1 21 71 0 0 chr4 133583259 133583301 -50705361 + AT_rich Low_complexity Low_complexity 1 42 0 40 0 0 0 chr4 133584291 133584331 -50704331 + AT_rich Low_complexity Low_complexity 1 40 0 294 95 0 0 chr4 133585505 133585547 -50703115 + (CA)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chr4 133586956 133586977 -50701685 + AT_rich Low_complexity Low_complexity 1 21 0 547 225 40 29 chr4 133589314 133589487 -50699175 - MER112 DNA MER1_type -85 175 1 325 310 62 23 chr4 133589553 133589682 -50698980 + MIR SINE MIR 97 230 -32 3914 132 9 72 chr4 133589686 133590423 -50698239 - LTR8 LTR ERV1 0 691 1 342 0 0 0 chr4 133591546 133591584 -50697078 + (TG)n Simple_repeat Simple_repeat 1 38 0 1613 161 3 34 chr4 133592574 133592905 -50695757 + AluJb SINE Alu 2 323 0 438 20 0 0 chr4 133593338 133593389 -50695273 + (TTA)n Simple_repeat Simple_repeat 2 52 0 2178 69 0 4 chr4 133593393 133593669 -50694993 - AluY SINE Alu -31 280 6 990 173 51 50 chr4 133594829 133595125 -50693537 - LTR53 LTR ERVL -3 516 163 2368 86 3 0 chr4 133595125 133595427 -50693235 + AluSp SINE Alu 2 304 -9 990 173 51 50 chr4 133595427 133595581 -50693081 - LTR53 LTR ERVL -356 163 11 3771 265 47 8 chr4 133595838 133596801 -50691861 - LTR52-int LTR ERVL -2387 3298 2299 658 248 7 0 chr4 133596882 133597027 -50691635 - LTR52-int LTR ERVL -2617 939 794 298 238 32 0 chr4 133597115 133597178 -50691484 + tRNA-Met-i tRNA tRNA 8 72 -3 2352 189 48 10 chr4 133598281 133598777 -50689885 - LTR53 LTR ERVL 0 519 5 750 257 83 38 chr4 133598979 133599427 -50689235 - HAL1 LINE L1 -1053 1454 987 1614 302 88 31 chr4 133599486 133600290 -50688372 - HAL1 LINE L1 -1626 881 32 25 0 0 0 chr4 133600511 133600536 -50688126 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr4 133601262 133601285 -50687377 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 133601468 133601496 -50687166 + AT_rich Low_complexity Low_complexity 1 28 0 243 113 25 100 chr4 133602906 133602986 -50685676 + T-rich Low_complexity Low_complexity 3 76 0 26 50 0 0 chr4 133605450 133605490 -50683172 + AT_rich Low_complexity Low_complexity 1 40 0 1822 121 55 7 chr4 133605628 133605917 -50682745 - AluY SINE Alu -6 305 3 635 264 63 34 chr4 133606967 133607380 -50681282 - L1MC5 LINE L1 -34 7927 7503 * 660 238 14 90 chr4 133607362 133607652 -50681010 - L1ME3A LINE L1 -1 6169 5902 491 333 91 15 chr4 133608108 133608447 -50680215 + L3b LINE CR1 1119 1483 -100 31 58 0 0 chr4 133609538 133609590 -50679072 + AT_rich Low_complexity Low_complexity 1 52 0 553 306 104 0 chr4 133611167 133611389 -50677273 + MIR SINE MIR 8 252 -10 2326 91 3 0 chr4 133613168 133613475 -50675187 - AluSp SINE Alu -3 310 3 263 362 69 80 chr4 133614417 133614779 -50673883 + L2 LINE L2 2915 3272 0 21 57 0 0 chr4 133615597 133615632 -50673030 + AT_rich Low_complexity Low_complexity 1 35 0 474 167 10 0 chr4 133616446 133616542 -50672120 + MER53 DNA DNA 93 189 0 28 48 0 0 chr4 133617878 133617920 -50670742 + AT_rich Low_complexity Low_complexity 1 42 0 195 184 0 0 chr4 133618281 133618319 -50670343 + (CATA)n Simple_repeat Simple_repeat 3 40 0 23 33 0 0 chr4 133618917 133618947 -50669715 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr4 133618978 133619001 -50669661 + AT_rich Low_complexity Low_complexity 1 23 0 1713 157 42 0 chr4 133619282 133619569 -50669093 + AluSx SINE Alu 1 299 -13 22 35 0 0 chr4 133619573 133619602 -50669060 + AT_rich Low_complexity Low_complexity 1 29 0 560 148 26 0 chr4 133619604 133619759 -50668903 + (TA)n Simple_repeat Simple_repeat 1 159 0 258 148 0 0 chr4 133620085 133620139 -50668523 + (TA)n Simple_repeat Simple_repeat 2 55 0 325 390 114 8 chr4 133620341 133620718 -50667944 + L3b LINE CR1 1114 1530 -53 32 43 0 0 chr4 133620823 133620869 -50667793 + AT_rich Low_complexity Low_complexity 1 46 0 1703 192 0 0 chr4 133621662 133621959 -50666703 - AluSx SINE Alu -15 297 1 697 251 98 55 chr4 133622070 133622396 -50666266 - MER2 DNA MER2_type -3 341 2 1597 186 3 0 chr4 133677182 133677532 -50611130 - HERVH LTR ERV1 -6775 938 609 326 89 0 0 chr4 133677534 133677579 -50611083 + tRNA-Gln-CAG tRNA tRNA 9 53 -22 2641 75 123 0 chr4 133677593 133677992 -50610670 - LTR7 LTR ERV1 -2 448 1 378 167 15 0 chr4 133677993 133678059 -50610603 - LTR49 LTR ERV1 -27 568 502 581 285 97 0 chr4 133678068 133678275 -50610387 - LTR29 LTR ERV1 -228 394 168 277 299 39 0 chr4 133678258 133678335 -50610327 - LTR48 LTR ERV1 -553 234 155 * 1975 128 40 73 chr4 133678834 133679286 -50609376 - LTR23 LTR ERV1 0 437 1 1862 175 22 53 chr4 133679318 133679729 -50608933 + MER57A LTR ERV1 6 403 0 27 62 0 0 chr4 133680966 133681014 -50607648 + AT_rich Low_complexity Low_complexity 1 48 0 25 0 0 0 chr4 133681462 133681487 -50607175 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr4 133682108 133682136 -50606526 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr4 133683310 133683336 -50605326 + AT_rich Low_complexity Low_complexity 1 26 0 304 221 100 0 chr4 133683952 133684046 -50604616 - L1MC/D LINE L1 -615 5547 5440 1047 343 81 29 chr4 133684084 133684662 -50604000 + L1PA13 LINE L1 789 1396 -6178 397 270 0 0 chr4 133684786 133684875 -50603787 + L1PA13 LINE L1 2085 2173 -5408 4586 247 10 7 chr4 133685132 133686466 -50602196 + L1PA13 LINE L1 2264 3613 -3971 28 0 0 0 chr4 133686496 133686524 -50602138 + AT_rich Low_complexity Low_complexity 1 28 0 187 368 72 20 chr4 133686941 133687093 -50601569 - L2 LINE L2 -404 2910 2751 312 313 30 30 chr4 133687760 133687894 -50600768 - L2 LINE L2 -660 2654 2521 315 370 14 0 chr4 133687929 133688075 -50600587 - HERVL LTR ERVL -3418 2236 2089 1052 260 60 24 chr4 133688077 133688595 -50600067 - LTR40a LTR ERVL -2 517 35 339 262 66 33 chr4 133688598 133688720 -50599942 - L1MEc LINE L1 -4648 1748 1623 542 294 101 3 chr4 133688761 133689128 -50599534 - L1MEc LINE L1 -4873 1523 1121 * 1179 283 75 29 chr4 133689127 133689608 -50599054 - L1MEc LINE L1 -5844 552 50 431 278 54 58 chr4 133689628 133689851 -50598811 - LTR16A1 LTR ERVL 0 457 236 781 108 19 19 chr4 133689856 133689966 -50598696 - LTR12 LTR ERV1 -23 691 583 3374 149 39 131 chr4 133689966 133690872 -50597790 - LTR12 LTR ERV1 0 826 5 781 108 19 19 chr4 133690872 133690907 -50597755 - LTR12 LTR ERV1 -131 583 106 * 2883 165 11 25 chr4 133690887 133691500 -50597162 - pTR5 LTR ERV1 -1093 1345 741 249 317 39 10 chr4 133691656 133691760 -50596902 - LTR16A1 LTR ERVL -350 107 1 26 30 0 0 chr4 133692399 133692432 -50596230 + AT_rich Low_complexity Low_complexity 1 33 0 356 253 11 88 chr4 133692785 133692967 -50595695 + MER112 DNA MER1_type 1 168 -92 188 323 31 0 chr4 133693784 133693849 -50594813 + L2 LINE L2 3246 3312 -1 2230 104 0 7 chr4 133695402 133695699 -50592963 + AluSx SINE Alu 1 295 -17 230 164 62 41 chr4 133695848 133695994 -50592668 + (TAA)n Simple_repeat Simple_repeat 1 149 0 1958 246 126 16 chr4 133696147 133696729 -50591933 + Looper DNA T2_type 1 710 -848 962 196 58 64 chr4 133696729 133697055 -50591607 + MER33 DNA MER1_type 1 324 0 1958 246 126 16 chr4 133697055 133697337 -50591325 + Looper DNA T2_type 710 960 -598 530 209 52 7 chr4 133697342 133697495 -50591167 + Looper DNA T2_type 1395 1554 -4 25 51 0 0 chr4 133697518 133697557 -50591105 + AT_rich Low_complexity Low_complexity 1 39 0 354 298 77 44 chr4 133697559 133697740 -50590922 - MLT1J LTR MaLR -322 189 3 1371 174 34 34 chr4 133699218 133699512 -50589150 + AluJb SINE Alu 1 294 -18 237 313 71 60 chr4 133699811 133699993 -50588669 + MIR SINE MIR 13 196 -66 2215 83 3 14 chr4 133700564 133700854 -50587808 + AluY SINE Alu 1 287 -24 206 282 8 57 chr4 133701390 133701514 -50587148 + GA-rich Low_complexity Low_complexity 6 123 0 1257 201 18 90 chr4 133701657 133701990 -50586672 - AluJo SINE Alu -3 309 1 2163 126 0 3 chr4 133702133 133702426 -50586236 + AluSg SINE Alu 1 292 -18 218 256 13 26 chr4 133703212 133703290 -50585372 + T-rich Low_complexity Low_complexity 3 79 0 230 111 97 0 chr4 133704297 133704369 -50584293 + (TA)n Simple_repeat Simple_repeat 1 79 0 22 35 0 0 chr4 133704411 133704440 -50584222 + AT_rich Low_complexity Low_complexity 1 29 0 2309 95 3 0 chr4 133704682 133704988 -50583674 + AluSg SINE Alu 1 307 -3 41 78 0 0 chr4 133706425 133706515 -50582147 + AT_rich Low_complexity Low_complexity 1 90 0 378 291 16 29 chr4 133706678 133706826 -50581836 - MIR SINE MIR -41 167 26 2484 34 7 3 chr4 133706908 133707201 -50581461 - AluY SINE Alu -17 294 1 1272 161 19 11 chr4 133707758 133708025 -50580637 - MER4B LTR ERV1 0 610 264 12571 130 80 39 chr4 133708108 133711223 -50577439 - MER4-int LTR ERV1 -2 6596 1862 1123 209 80 4 chr4 133711223 133711462 -50577200 + LTR8 LTR ERV1 1 257 -434 3941 76 68 47 chr4 133711462 133712172 -50576490 - MER4B-int LTR ERV1 -4103 2495 1771 1984 117 3 20 chr4 133712180 133712478 -50576184 - AluSg SINE Alu -17 293 1 1176 107 121 76 chr4 133712478 133712803 -50575859 - MER4B-int LTR ERV1 -4272 1286 503 306 137 0 0 chr4 133712801 133712852 -50575810 - MER4B-int LTR ERV1 -5712 886 836 * 2534 105 96 19 chr4 133712980 133713527 -50575135 - MER4B-int LTR ERV1 -5966 632 1 1367 138 7 118 chr4 133713530 133713827 -50574835 - MER4B LTR ERV1 0 610 377 291 70 394 14 chr4 133713860 133713931 -50574731 - MER4A LTR ERV1 -566 98 1 371 230 0 0 chr4 133714018 133714092 -50574570 + MIR SINE MIR 84 157 -105 2489 68 133 0 chr4 133714105 133714487 -50574175 - LTR7 LTR ERV1 -17 433 1 2329 101 50 13 chr4 133714487 133714863 -50573799 - HERVH LTR ERV1 0 7713 7324 1318 128 0 0 chr4 133714863 133715059 -50573603 - HERVH LTR ERV1 -1894 5819 5624 3891 129 82 2 chr4 133715095 133715708 -50572954 - HERVH LTR ERV1 -2564 5149 4488 5674 97 14 2 chr4 133715710 133716554 -50572108 - HERVH LTR ERV1 -3720 3993 3140 * 14456 106 7 21 chr4 133716548 133718841 -50569821 - HERVH LTR ERV1 -4726 2987 727 230 309 10 37 chr4 133718951 133719122 -50569540 + CT-rich Low_complexity Low_complexity 6 286 0 25 51 0 0 chr4 133719708 133719747 -50568915 + AT_rich Low_complexity Low_complexity 1 39 0 3619 139 9 49 chr4 133719809 133720314 -50568348 - MER39B LTR ERV1 -1 652 179 2673 85 18 0 chr4 133720314 133720701 -50567961 - L1PA10 LINE L1 -3 6165 5772 3619 139 9 49 chr4 133720701 133720872 -50567790 - MER39B LTR ERV1 -474 179 3 1235 255 95 62 chr4 133720879 133721659 -50567003 - L1ME3A LINE L1 -98 6072 5267 1167 269 100 38 chr4 133721791 133722335 -50566327 - MLT1G LTR MaLR -43 547 7 820 302 81 57 chr4 133722375 133723133 -50565529 - L1MEd LINE L1 -4906 1213 438 648 324 36 33 chr4 133723193 133723526 -50565136 - L1MEd LINE L1 -5784 335 2 2208 96 0 0 chr4 133723781 133724085 -50564577 - AluY SINE Alu 0 304 1 4339 88 43 7 chr4 133724188 133725270 -50563392 - MER11A LTR ERVK 0 1266 1 199 390 55 49 chr4 133725641 133725829 -50562833 + L3 LINE CR1 1209 1401 -176 2196 108 3 0 chr4 133725829 133726125 -50562537 + AluSx SINE Alu 1 297 -15 199 390 55 49 chr4 133726125 133726280 -50562382 + L3 LINE CR1 1401 1554 -23 276 231 13 13 chr4 133726306 133726384 -50562278 - MLT1E LTR MaLR 0 593 516 945 299 85 38 chr4 133726387 133727151 -50561511 - L1ME3A LINE L1 -143 6027 5300 2161 110 0 10 chr4 133727151 133727452 -50561210 - AluSc SINE Alu -11 298 1 945 299 85 38 chr4 133727452 133728551 -50560111 - L1ME3A LINE L1 -870 5300 4028 609 297 114 55 chr4 133728686 133729142 -50559520 + MLT1H1 LTR MaLR 13 478 -64 2321 70 0 0 chr4 133729142 133729427 -50559235 - AluY SINE Alu -26 285 1 609 297 114 55 chr4 133729427 133729489 -50559173 + MLT1H1 LTR MaLR 478 535 -7 205 140 0 70 chr4 133729596 133729653 -50559009 + (TATAA)n Simple_repeat Simple_repeat 2 54 0 290 272 39 0 chr4 133729687 133729867 -50558795 - L1ME3A LINE L1 -3829 2317 2131 183 80 0 0 chr4 133729870 133729895 -50558767 + (TG)n Simple_repeat Simple_repeat 2 26 0 235 341 23 31 chr4 133730287 133730416 -50558246 - MIR SINE MIR -6 256 129 5647 127 16 7 chr4 133730785 133732104 -50556558 - L1PA15 LINE L1 0 6165 4843 35 92 0 0 chr4 133732139 133732237 -50556425 + AT_rich Low_complexity Low_complexity 1 98 0 26 0 0 0 chr4 133733089 133733115 -50555547 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr4 133735730 133735752 -50552910 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 133735863 133735893 -50552769 + AT_rich Low_complexity Low_complexity 1 30 0 317 250 33 8 chr4 133736805 133736925 -50551737 + (TA)n Simple_repeat Simple_repeat 1 123 0 189 172 47 0 chr4 133736972 133737036 -50551626 + (TA)n Simple_repeat Simple_repeat 2 68 0 420 209 0 0 chr4 133737086 133737177 -50551485 + (TA)n Simple_repeat Simple_repeat 1 91 0 21 36 0 0 chr4 133739192 133739220 -50549442 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr4 133739820 133739844 -50548818 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr4 133740247 133740282 -50548380 + AT_rich Low_complexity Low_complexity 1 35 0 390 277 102 40 chr4 133740976 133741153 -50547509 - MIR SINE MIR -27 235 48 309 217 0 0 chr4 133741388 133741471 -50547191 + (TATATG)n Simple_repeat Simple_repeat 6 88 0 209 338 68 27 chr4 133741953 133742101 -50546561 + MIR SINE MIR 40 193 -69 412 324 138 0 chr4 133742157 133742302 -50546360 - MIR SINE MIR -21 241 77 27 29 0 0 chr4 133742914 133742948 -50545714 + AT_rich Low_complexity Low_complexity 1 34 0 315 345 17 9 chr4 133743156 133743272 -50545390 + L2 LINE L2 3191 3307 -6 2050 128 23 0 chr4 133745692 133745818 -50542844 + AluSq SINE Alu 1 123 -190 306 0 0 0 chr4 133745818 133745852 -50542810 + (CA)n Simple_repeat Simple_repeat 2 35 0 2050 128 23 0 chr4 133745852 133746029 -50542633 + AluSq SINE Alu 123 311 -2 30 0 0 0 chr4 133746122 133746152 -50542510 + AT_rich Low_complexity Low_complexity 1 30 0 2007 122 0 14 chr4 133747211 133747505 -50541157 + AluSx SINE Alu 1 290 -22 864 53 26 0 chr4 133747521 133747635 -50541027 + L1PA5 LINE L1 6035 6151 -3 26 50 0 0 chr4 133748176 133748216 -50540446 + AT_rich Low_complexity Low_complexity 1 40 0 2177 158 60 53 chr4 133749482 133749523 -50539139 - L1MA9 LINE L1 0 7333 7294 201 74 0 0 chr4 133749523 133749550 -50539112 + (TA)n Simple_repeat Simple_repeat 1 27 0 2177 158 60 53 chr4 133749550 133749707 -50538955 - L1MA9 LINE L1 -39 7294 7140 1251 202 89 37 chr4 133749707 133750034 -50538628 + MER2 DNA MER2_type 1 344 0 2177 158 60 53 chr4 133750034 133750347 -50538315 - L1MA9 LINE L1 -193 7140 6817 191 108 65 43 chr4 133750357 133750450 -50538212 + (TA)n Simple_repeat Simple_repeat 2 96 0 207 246 36 36 chr4 133750452 133750619 -50538043 + (TTATA)n Simple_repeat Simple_repeat 5 171 0 * 220 170 78 35 chr4 133750495 133750636 -50538026 + (ATATG)n Simple_repeat Simple_repeat 4 150 0 1484 189 28 22 chr4 133750683 133751005 -50537657 - L1MA9 LINE L1 -524 6809 6486 1944 194 32 28 chr4 133751007 133751555 -50537107 + MLT2A2 LTR ERVL 1 554 0 3222 193 135 27 chr4 133751557 133751643 -50537019 - L1MA9 LINE L1 -703 6486 6411 2126 125 0 0 chr4 133751643 133751931 -50536731 - AluSx SINE Alu -24 288 1 3222 193 135 27 chr4 133751931 133752891 -50535771 - L1MA9 LINE L1 -778 6411 5321 * 6264 40 5 3 chr4 133752885 133753651 -50535011 - L1PA4 LINE L1 0 6155 5388 3619 223 56 34 chr4 133753643 133754744 -50533918 - L1MA9 LINE L1 -1830 5337 4212 * 1454 249 94 21 chr4 133754761 133755624 -50533038 - L1MA9 LINE L1 -3418 3749 2767 1166 299 62 21 chr4 133755620 133756188 -50532474 - L1MA9 LINE L1 -4966 2202 1612 * 306 393 42 27 chr4 133756749 133757011 -50531651 - L1MA9 LINE L1 -5707 1391 1126 2115 117 7 0 chr4 133757791 133758090 -50530572 - AluY SINE Alu -10 301 1 27 29 0 0 chr4 133758170 133758204 -50530458 + AT_rich Low_complexity Low_complexity 1 34 0 333 320 69 49 chr4 133758498 133758945 -50529717 - L1M4 LINE L1 -1485 4661 4206 22 0 0 0 chr4 133759326 133759348 -50529314 + AT_rich Low_complexity Low_complexity 1 22 0 53 81 0 0 chr4 133759662 133759785 -50528877 + AT_rich Low_complexity Low_complexity 1 123 0 23 0 0 0 chr4 133759962 133759985 -50528677 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr4 133761303 133761325 -50527337 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 21 0 0 0 chr4 133761555 133761576 -50527086 + AT_rich Low_complexity Low_complexity 1 21 0 560 200 55 0 chr4 133762669 133762779 -50525883 - FLAM_A SINE Alu -17 116 1 202 146 0 24 chr4 133763030 133763071 -50525591 + (TTATA)n Simple_repeat Simple_repeat 5 44 0 192 97 0 0 chr4 133763186 133763217 -50525445 + (CA)n Simple_repeat Simple_repeat 2 32 0 22 35 0 0 chr4 133764135 133764164 -50524498 + AT_rich Low_complexity Low_complexity 1 29 0 1924 202 151 10 chr4 133764315 133764824 -50523838 - L1MC2 LINE L1 -22 6322 5742 759 161 0 0 chr4 133764820 133764944 -50523718 + L1MC2 LINE L1 5609 5732 -601 * 30 0 0 0 chr4 133764975 133765005 -50523657 + AT_rich Low_complexity Low_complexity 1 30 0 763 286 64 0 chr4 133765015 133765249 -50523413 - L1MC2 LINE L1 -598 5761 5513 633 177 18 0 chr4 133765290 133765403 -50523259 - AluSq/x SINE Alu -196 117 3 553 245 60 71 chr4 133765457 133765655 -50523007 - L1MC2 LINE L1 -743 5403 5300 1523 174 14 7 chr4 133765655 133765942 -50522720 - AluJo SINE Alu -8 304 16 553 245 60 71 chr4 133765942 133766116 -50522546 - L1MC2 LINE L1 -846 5300 5126 272 272 103 0 chr4 133766188 133766324 -50522338 + L1ME LINE L1 5732 5881 -240 185 337 174 0 chr4 133767740 133767832 -50520830 - MIR SINE MIR -41 221 114 2059 116 33 3 chr4 133768313 133768615 -50520047 - AluSq SINE Alu -2 311 1 233 383 0 0 chr4 133769968 133770049 -50518613 + L2 LINE L2 2735 2815 -499 22 0 0 0 chr4 133770195 133770217 -50518445 + AT_rich Low_complexity Low_complexity 1 22 0 3121 165 66 9 chr4 133770218 133770682 -50517980 - L1MB2 LINE L1 -3 6168 5657 2231 121 0 0 chr4 133770682 133770989 -50517673 - AluSc SINE Alu -2 307 1 3121 165 66 9 chr4 133770989 133771160 -50517502 - L1MB2 LINE L1 -514 5657 5497 186 43 0 0 chr4 133771938 133771961 -50516701 + (TG)n Simple_repeat Simple_repeat 2 24 0 1214 121 6 0 chr4 133772323 133772497 -50516165 - AluSg/x SINE Alu -4 308 134 28 0 0 0 chr4 133772503 133772531 -50516131 + AT_rich Low_complexity Low_complexity 1 28 0 1523 53 5 29 chr4 133773599 133773808 -50514854 + L1PA8 LINE L1 5956 6159 -13 237 284 15 0 chr4 133773948 133774015 -50514647 - MIR SINE MIR -60 202 135 3467 114 7 22 chr4 133774119 133774311 -50514351 + L1PB2 LINE L1 5605 5798 -353 315 0 0 0 chr4 133774311 133774346 -50514316 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 3467 114 7 22 chr4 133774346 133774706 -50513956 + L1PB2 LINE L1 5798 6149 -2 2088 128 35 44 chr4 133775104 133775471 -50513191 - THE1B LTR MaLR 0 364 1 2221 165 34 14 chr4 133775526 133775944 -50512718 - MSTB LTR MaLR 0 426 1 22 0 0 0 chr4 133776703 133776725 -50511937 + AT_rich Low_complexity Low_complexity 1 22 0 299 362 17 9 chr4 133776739 133776855 -50511807 + L2 LINE L2 3197 3313 0 8244 84 11 7 chr4 133776879 133778849 -50509813 - L1PA7 LINE L1 -5 6149 4175 8318 130 21 37 chr4 133778849 133781125 -50507537 - L1PA7 LINE L1 -2773 3373 12 13701 186 29 13 chr4 133781440 133785158 -50503504 - L1PA13 LINE L1 -4 6159 2396 10340 222 43 25 chr4 133785911 133789768 -50498894 - L1MB1 LINE L1 -1 5991 2084 443 235 171 6 chr4 133789784 133789954 -50498708 - L1MB1 LINE L1 -3943 2029 1832 4077 265 65 25 chr4 133789959 133791642 -50497020 - L1MB1 LINE L1 -4464 1506 1 21 0 0 0 chr4 133791669 133791690 -50496972 + AT_rich Low_complexity Low_complexity 1 21 0 318 246 136 55 chr4 133791759 133791958 -50496704 - HAL1 LINE L1 0 2507 2293 692 316 42 49 chr4 133791958 133792125 -50496537 - HAL1 LINE L1 -439 2068 1901 440 273 68 54 chr4 133792125 133792330 -50496332 - MER63A DNA MER1_type -1 209 2 692 316 42 49 chr4 133792330 133792612 -50496050 - HAL1 LINE L1 -606 1901 1622 1479 68 0 0 chr4 133793529 133793720 -50494942 + L1PB1 LINE L1 5954 6144 -7 1042 242 79 46 chr4 133793788 133794156 -50494506 + MLT1B LTR MaLR 11 390 0 498 260 181 56 chr4 133794200 133794542 -50494120 + HAL1 LINE L1 791 1175 -1332 30 36 0 18 chr4 133795159 133795177 -50493485 + AT_rich Low_complexity Low_complexity 1 18 -36 1492 173 58 36 chr4 133795177 133795454 -50493208 + AluJb SINE Alu 3 285 -27 30 36 0 18 chr4 133795454 133795490 -50493172 + AT_rich Low_complexity Low_complexity 18 54 0 634 141 33 221 chr4 133795839 133796052 -50492610 - Tigger3(Golem) DNA MER2_type -165 2864 2 200 111 0 28 chr4 133796405 133796441 -50492221 + (GGAA)n Simple_repeat Simple_repeat 2 36 0 1403 306 115 29 chr4 133797961 133799061 -50489601 + L2 LINE L2 2121 3313 0 23 68 0 0 chr4 133800085 133800129 -50488533 + AT_rich Low_complexity Low_complexity 1 44 0 381 300 128 31 chr4 133801410 133801700 -50486962 + L1M4 LINE L1 3070 3387 -2759 3369 296 91 65 chr4 133801807 133802192 -50486470 + L2 LINE L2 781 1154 -2159 2032 201 40 42 chr4 133802192 133802665 -50485997 + MER70A LTR ERVL 1 472 0 3369 296 91 65 chr4 133802665 133803592 -50485070 + L2 LINE L2 1154 2055 -1258 2751 79 3 0 chr4 133803592 133803946 -50484716 - THE1A LTR MaLR 0 355 1 3369 296 91 65 chr4 133803946 133805108 -50483554 + L2 LINE L2 2055 3309 -4 25 0 0 0 chr4 133805610 133805635 -50483027 + AT_rich Low_complexity Low_complexity 1 25 0 22 56 0 0 chr4 133805943 133805979 -50482683 + AT_rich Low_complexity Low_complexity 1 36 0 1556 182 32 74 chr4 133805987 133806394 -50482268 - MLT1B LTR MaLR 0 390 1 237 159 0 0 chr4 133807441 133807485 -50481177 + (TA)n Simple_repeat Simple_repeat 1 44 0 25 51 0 0 chr4 133808102 133808141 -50480521 + AT_rich Low_complexity Low_complexity 1 39 0 360 258 40 0 chr4 133808958 133809047 -50479615 + (CATATA)n Simple_repeat Simple_repeat 3 100 -31 2433 119 17 6 chr4 133809047 133809407 -50479255 + THE1B LTR MaLR 1 364 0 360 258 40 0 chr4 133809407 133809441 -50479221 + (CATATA)n Simple_repeat Simple_repeat 100 131 0 1152 156 5 38 chr4 133809523 133809735 -50478927 + Tigger1 DNA MER2_type 2213 2417 -1 21 57 0 0 chr4 133809936 133809971 -50478691 + AT_rich Low_complexity Low_complexity 1 35 0 23 97 0 0 chr4 133810221 133810293 -50478369 + AT_rich Low_complexity Low_complexity 1 72 0 425 311 54 43 chr4 133810505 133810855 -50477807 - L1MC4a LINE L1 -1866 5942 5589 21 0 0 0 chr4 133810888 133810909 -50477753 + AT_rich Low_complexity Low_complexity 1 21 0 37 23 0 0 chr4 133811143 133811187 -50477475 + AT_rich Low_complexity Low_complexity 1 44 0 2666 45 0 0 chr4 133812803 133813112 -50475550 - AluY SINE Alu -2 309 1 2789 129 5 7 chr4 133813604 133814030 -50474632 + MER61B LTR ERV1 1 425 0 33 90 0 0 chr4 133814153 133814242 -50474420 + AT_rich Low_complexity Low_complexity 1 89 0 361 272 163 31 chr4 133814272 133814566 -50474096 - L1MC4a LINE L1 -1596 4550 4218 259 224 47 84 chr4 133814659 133814766 -50473896 + L1MC4 LINE L1 7513 7615 -427 617 231 132 51 chr4 133814788 133815083 -50473579 + L1MC4 LINE L1 7724 8042 0 2674 157 2 7 chr4 133815093 133815558 -50473104 + L1PA13 LINE L1 5682 6144 -19 22 56 0 0 chr4 133816474 133816510 -50472152 + AT_rich Low_complexity Low_complexity 1 36 0 1934 122 0 10 chr4 133816529 133816824 -50471838 - AluY SINE Alu -19 292 1 21 36 0 0 chr4 133816824 133816852 -50471810 + AT_rich Low_complexity Low_complexity 1 28 0 28 48 0 0 chr4 133817485 133817527 -50471135 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr4 133817751 133817774 -50470888 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 133818939 133818962 -50469700 + AT_rich Low_complexity Low_complexity 1 23 0 26 64 0 0 chr4 133819924 133819971 -50468691 + AT_rich Low_complexity Low_complexity 1 47 0 1776 209 75 51 chr4 133820499 133820921 -50467741 + MLT1D LTR MaLR 1 438 -67 2793 13 0 0 chr4 133820921 133821229 -50467433 - AluY SINE Alu -3 308 1 1776 209 75 51 chr4 133821229 133821299 -50467363 + MLT1D LTR MaLR 438 505 0 21 36 0 0 chr4 133821324 133821352 -50467310 + AT_rich Low_complexity Low_complexity 1 28 0 718 342 56 20 chr4 133821417 133821774 -50466888 - LTR16B LTR ERVL -18 446 77 1561 178 3 35 chr4 133822401 133822715 -50465947 + AluSx SINE Alu 1 304 -8 2412 183 15 22 chr4 133822998 133823213 -50465449 - MER65C LTR ERV1 0 461 246 3910 107 23 46 chr4 133823213 133823682 -50464980 - LTR9B LTR ERV1 -1 643 192 2046 128 3 3 chr4 133823682 133823986 -50464676 - AluSg SINE Alu 0 310 7 3910 107 23 46 chr4 133823986 133824173 -50464489 - LTR9B LTR ERV1 -452 192 2 2412 183 15 22 chr4 133824173 133824421 -50464241 - MER65C LTR ERV1 -215 246 1 2997 130 64 11 chr4 133824757 133825337 -50463325 - MER4B LTR ERV1 0 779 1 228 367 182 26 chr4 133825545 133825935 -50462727 + L2 LINE L2 2030 2480 -834 3699 192 47 11 chr4 133826125 133826915 -50461747 + LTR1B LTR ERV1 9 826 0 1835 230 65 26 chr4 133827801 133828257 -50460405 + MLT2B2 LTR ERVL 1 479 -36 456 19 0 0 chr4 133828257 133828310 -50460352 + (TA)n Simple_repeat Simple_repeat 1 53 0 1835 230 65 26 chr4 133828310 133828349 -50460313 + MLT2B2 LTR ERVL 479 515 0 542 192 99 35 chr4 133828708 133828880 -50459782 - MER58C DNA MER1_type -2 213 31 22 0 0 0 chr4 133829027 133829049 -50459613 + AT_rich Low_complexity Low_complexity 1 22 0 339 271 93 0 chr4 133829049 133829167 -50459495 - MLT1J LTR MaLR -35 476 348 334 320 39 44 chr4 133829302 133829483 -50459179 - MLT1J LTR MaLR -331 180 1 23 33 0 0 chr4 133829562 133829592 -50459070 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 133830181 133830202 -50458460 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr4 133830378 133830405 -50458257 + AT_rich Low_complexity Low_complexity 1 27 0 330 125 28 14 chr4 133830672 133830744 -50457918 - L1PA16 LINE L1 -2 6164 6092 2454 126 25 10 chr4 133830744 133831148 -50457514 + L1PA12 LINE L1 5721 6130 -38 * 2895 158 2 6 chr4 133831138 133831614 -50457048 - L1PA16 LINE L1 -61 6105 5632 967 187 189 15 chr4 133831614 133832018 -50456644 + MER52A LTR ERV1 1 555 -1200 * 1773 166 6 12 chr4 133832008 133832327 -50456335 + MER52A LTR ERV1 1439 1755 0 1483 127 41 0 chr4 133832327 133832571 -50456091 - L1PA16 LINE L1 -531 5635 5382 2660 102 3 0 chr4 133833068 133833429 -50455233 + THE1B LTR MaLR 1 362 -2 33 0 0 0 chr4 133833559 133833592 -50455070 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr4 133833998 133834020 -50454642 + AT_rich Low_complexity Low_complexity 1 22 0 204 40 0 0 chr4 133835071 133835096 -50453566 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 1222 284 91 25 chr4 133835869 133836354 -50452308 - LTR40a LTR ERVL 0 519 3 1106 258 302 75 chr4 133836492 133837147 -50451515 + MER52A LTR ERV1 668 1471 -284 521 319 0 6 chr4 133837147 133837307 -50451355 + MER52A LTR ERV1 1596 1754 -1 22 0 0 0 chr4 133837400 133837422 -50451240 + AT_rich Low_complexity Low_complexity 1 22 0 580 323 90 27 chr4 133837438 133837992 -50450670 + L1M4 LINE L1 2125 2713 -3433 27 49 0 0 chr4 133838018 133838059 -50450603 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chr4 133838886 133838910 -50449752 + AT_rich Low_complexity Low_complexity 1 24 0 3422 210 81 81 chr4 133841094 133842212 -50446450 + LTR28 LTR ERV1 1 636 0 272 311 22 22 chr4 133842802 133842892 -50445770 - MIR3 SINE MIR -54 154 65 25 51 0 0 chr4 133842955 133842994 -50445668 + AT_rich Low_complexity Low_complexity 1 39 0 1617 117 132 0 chr4 133843289 133843554 -50445108 + AluSg SINE Alu 1 300 0 1581 142 124 15 chr4 133843851 133844118 -50444544 - AluSg SINE Alu -14 296 1 674 273 67 10 chr4 133844755 133844949 -50443713 - LTR16B LTR ERVL -14 450 246 587 391 16 16 chr4 133845766 133846255 -50442407 - HERV16 LTR ERVL -895 4869 4381 459 355 17 27 chr4 133846290 133846593 -50442069 - HERV16 LTR ERVL -1063 3933 3757 301 242 0 74 chr4 133846635 133846730 -50441932 - HERV16 LTR ERVL -1337 3659 3572 1427 239 0 42 chr4 133846752 133847112 -50441550 - MLT1A1 LTR MaLR 0 365 21 1331 333 51 17 chr4 133847129 133848028 -50440634 - HERV16 LTR ERVL -2387 2609 1659 474 376 16 4 chr4 133848031 133848286 -50440376 - HERV16 LTR ERVL -3817 1179 922 594 343 20 43 chr4 133848456 133848847 -50439815 - HERV16 LTR ERVL -4320 676 295 1028 302 50 18 chr4 133849108 133849509 -50439153 - LTR16B LTR ERVL -50 414 1 419 0 20 0 chr4 133849523 133849574 -50439088 + (CA)n Simple_repeat Simple_repeat 2 53 0 1596 275 58 11 chr4 133849574 133850388 -50438274 - L1MEc LINE L1 -2948 3616 2765 1576 121 191 16 chr4 133850393 133850707 -50437955 - MSTA LTR MaLR -2 426 58 * 14164 153 48 23 chr4 133850701 133853260 -50435402 - Tigger2 DNA MER2_type -95 2623 1 22 0 0 0 chr4 133854135 133854157 -50434505 + AT_rich Low_complexity Low_complexity 1 22 0 1837 193 46 31 chr4 133855027 133855570 -50433092 + MLT2A2 LTR ERVL 1 554 0 603 314 143 42 chr4 133857132 133857600 -50431062 + L2 LINE L2 2469 2991 -281 1911 154 20 89 chr4 133857607 133858047 -50430615 + L1MA8 LINE L1 5880 6289 -2 234 191 0 0 chr4 133858069 133858116 -50430546 + (TATG)n Simple_repeat Simple_repeat 4 50 0 1087 62 0 14 chr4 133858154 133858300 -50430362 - L1PA8 LINE L1 0 6172 6029 831 266 53 11 chr4 133858344 133858686 -50429976 - MSTD LTR MaLR 0 396 1 269 287 10 59 chr4 133858758 133858859 -50429803 - L2 LINE L2 -534 2780 2685 1336 286 44 67 chr4 133859079 133860020 -50428642 - L1MEc LINE L1 -4287 2458 1540 291 339 63 8 chr4 133860124 133860251 -50428411 - LTR16A LTR ERVL -75 375 242 734 301 47 33 chr4 133860268 133860544 -50428118 - LTR16A LTR ERVL -168 282 3 24 53 0 0 chr4 133860850 133860888 -50427774 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr4 133861652 133861675 -50426987 + AT_rich Low_complexity Low_complexity 1 23 0 225 211 0 0 chr4 133861779 133861831 -50426831 + (TG)n Simple_repeat Simple_repeat 1 52 0 188 186 0 23 chr4 133861832 133861875 -50426787 - L2 LINE L2 -94 3219 3178 1177 276 48 27 chr4 133862084 133862526 -50426136 - L1MEc LINE L1 -5589 456 6 824 155 26 30 chr4 133863489 133863676 -50424986 + MER67D LTR ERV1 1 196 -356 226 274 155 0 chr4 133863838 133863922 -50424740 + MLT1L LTR MaLR 479 575 -40 915 156 7 0 chr4 133864252 133864406 -50424256 + AluJb SINE Alu 141 295 -17 2102 105 7 3 chr4 133864408 133864714 -50423948 + AluSq SINE Alu 1 307 -6 2743 239 58 28 chr4 133866424 133867982 -50420680 + L1ME LINE L1 4181 5795 -369 754 223 0 0 chr4 133867992 133868140 -50420522 - AluSg/x SINE Alu -29 283 136 549 198 279 2 chr4 133868321 133868525 -50420137 + L1ME LINE L1 5379 5586 -584 30 59 0 0 chr4 133868569 133868620 -50420042 + AT_rich Low_complexity Low_complexity 1 51 0 22 35 0 0 chr4 133869533 133869562 -50419100 + AT_rich Low_complexity Low_complexity 1 29 0 225 317 19 19 chr4 133869612 133869716 -50418946 - L2 LINE L2 -968 2346 2243 2007 121 3 24 chr4 133870044 133870341 -50418321 + AluJo SINE Alu 5 295 -17 21 0 0 0 chr4 133870930 133870951 -50417711 + AT_rich Low_complexity Low_complexity 1 21 0 194 0 39 0 chr4 133870988 133871014 -50417648 + (CAA)n Simple_repeat Simple_repeat 2 28 0 198 353 30 30 chr4 133871091 133871224 -50417438 - MIR3 SINE MIR -69 139 7 4454 80 0 10 chr4 133872387 133872997 -50415665 + L1PA8A LINE L1 5528 6131 0 24 0 0 0 chr4 133873253 133873277 -50415385 + AT_rich Low_complexity Low_complexity 1 24 0 580 244 0 0 chr4 133873660 133873779 -50414883 + L1PB4 LINE L1 4023 4141 -2005 4723 152 22 7 chr4 133873785 133874628 -50414034 + L1PB4 LINE L1 5299 6154 -2 187 388 19 10 chr4 133874633 133874736 -50413926 + L2 LINE L2 1182 1285 -2029 360 320 66 25 chr4 133874795 133874992 -50413670 + MLT1L LTR MaLR 16 220 -395 1828 296 86 10 chr4 133875266 133876159 -50412503 - L1ME LINE L1 -2091 3989 3029 324 226 66 0 chr4 133876161 133876267 -50412395 - L1ME LINE L1 -3470 2610 2498 621 330 92 26 chr4 133876326 133876795 -50411867 - L1ME LINE L1 -5467 603 104 669 295 83 10 chr4 133877156 133877349 -50411313 + MER58A DNA MER1_type 1 207 -17 2416 187 25 25 chr4 133877411 133877887 -50410775 - MER70B LTR ERVL -102 476 1 2708 173 56 43 chr4 133878280 133879023 -50409639 + LTR1 LTR ERV1 1 707 -78 1198 300 45 24 chr4 133879494 133879961 -50408701 + HERV16 LTR ERVL 51 527 -4469 1703 326 87 15 chr4 133880068 133880885 -50407777 + HERV16 LTR ERVL 686 1561 -3435 204 40 0 0 chr4 133881627 133881652 -50407010 + (TG)n Simple_repeat Simple_repeat 2 26 0 199 240 19 0 chr4 133881662 133881766 -50406896 + (TA)n Simple_repeat Simple_repeat 2 107 0 1420 137 94 8 chr4 133882742 133882998 -50405664 + AluJb SINE Alu 34 311 -1 3021 136 24 55 chr4 133883396 133884025 -50404637 - MER4B LTR ERV1 0 779 1 200 290 14 0 chr4 133884030 133884099 -50404563 + (CATA)n Simple_repeat Simple_repeat 2 71 0 2177 115 0 3 chr4 133884482 133884786 -50403876 - AluSc SINE Alu -6 303 1 436 355 104 26 chr4 133886813 133887359 -50401303 - L2 LINE L2 -342 2972 2384 567 175 0 0 chr4 133887455 133887552 -50401110 - MLT1A1 LTR MaLR -9 356 260 281 354 88 0 chr4 133887733 133887880 -50400782 - MIR SINE MIR -59 203 44 345 357 54 0 chr4 133888826 133889011 -50399651 + MIR SINE MIR 68 262 0 337 341 39 8 chr4 133889287 133889416 -50399246 - MER5A DNA MER1_type 0 189 57 207 346 70 6 chr4 133889875 133890031 -50398631 + MIR SINE MIR 91 256 -6 23 54 0 0 chr4 133890212 133890249 -50398413 + AT_rich Low_complexity Low_complexity 1 37 0 279 385 85 0 chr4 133890254 133890384 -50398278 + L2 LINE L2 3132 3272 0 249 349 47 8 chr4 133891589 133891718 -50396944 - MER5B DNA MER1_type -44 134 1 21 0 0 0 chr4 133892968 133892989 -50395673 + AT_rich Low_complexity Low_complexity 1 21 0 28 48 0 0 chr4 133893358 133893400 -50395262 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr4 133895256 133895279 -50393383 + AT_rich Low_complexity Low_complexity 1 23 0 1549 189 0 7 chr4 133895331 133895601 -50393061 - AluJo SINE Alu -44 268 1 38 22 0 0 chr4 133895601 133895646 -50393016 + AT_rich Low_complexity Low_complexity 1 45 0 25 0 0 0 chr4 133895751 133895776 -50392886 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr4 133898784 133898812 -50389850 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 133899598 133899619 -50389043 + AT_rich Low_complexity Low_complexity 1 21 0 2309 137 60 21 chr4 133900505 133900935 -50387727 + LTR7 LTR ERV1 2 448 -2 12606 120 23 28 chr4 133900937 133903458 -50385204 + HERVH LTR ERV1 1 2830 -4883 1431 86 5 0 chr4 133903458 133903656 -50385006 + HERVH LTR ERV1 3357 3555 -4158 1033 94 0 7 chr4 133903659 133903808 -50384854 + LTR7 LTR ERV1 301 448 -2 2017 184 59 9 chr4 133903918 133904342 -50384320 - MER65A LTR ERV1 0 445 1 897 124 0 0 chr4 133904609 133904738 -50383924 - AluSq/x SINE Alu -183 129 1 791 270 31 6 chr4 133904743 133904765 -50383897 - L1MEc LINE L1 -5218 1178 1158 369 0 0 0 chr4 133904765 133904806 -50383856 + (TG)n Simple_repeat Simple_repeat 2 42 0 791 270 31 6 chr4 133904806 133905105 -50383557 - L1MEc LINE L1 -5238 1158 849 1670 223 11 30 chr4 133905114 133905486 -50383176 + MLT1A1 LTR MaLR 1 365 0 609 333 40 28 chr4 133905699 133906170 -50382492 - L1MEc LINE L1 -5884 512 36 366 23 0 0 chr4 133907753 133907796 -50380866 + (TG)n Simple_repeat Simple_repeat 2 44 0 228 135 0 0 chr4 133908154 133908191 -50380471 + (TG)n Simple_repeat Simple_repeat 1 37 0 351 303 141 48 chr4 133909618 133910313 -50378349 - L2 LINE L2 -2 3311 2560 28 0 0 0 chr4 133911489 133911517 -50377145 + AT_rich Low_complexity Low_complexity 1 28 0 31 0 0 0 chr4 133912096 133912127 -50376535 + AT_rich Low_complexity Low_complexity 1 31 0 40 91 0 0 chr4 133912814 133912924 -50375738 + AT_rich Low_complexity Low_complexity 1 110 0 420 314 86 14 chr4 133913097 133913307 -50375355 + L2 LINE L2 3080 3304 -9 1826 157 17 0 chr4 133913390 133913689 -50374973 + AluSx SINE Alu 3 306 -6 643 334 97 50 chr4 133913798 133914337 -50374325 - HAL1 LINE L1 -1130 1377 814 780 208 133 29 chr4 133916423 133916664 -50371998 + MER57A LTR ERV1 124 389 -14 1279 233 82 17 chr4 133917294 133917418 -50371244 + LTR47B LTR ERVL 1 116 -327 2263 101 3 3 chr4 133917418 133917725 -50370937 + AluSp SINE Alu 1 307 -6 1279 233 82 17 chr4 133917725 133918016 -50370646 + LTR47B LTR ERVL 116 443 0 445 122 327 9 chr4 133918489 133918596 -50370066 + L1PA15 LINE L1 6018 6158 -7 1227 159 82 0 chr4 133918800 133919007 -50369655 + MER30 DNA MER1_type 7 230 0 305 238 50 0 chr4 133920097 133920177 -50368485 - L1ME3 LINE L1 -8 6154 6071 709 302 134 40 chr4 133920608 133921078 -50367584 - MER115 DNA AcHobo -3 690 177 1031 286 124 26 chr4 133921304 133921846 -50366816 + L1ME3A LINE L1 5563 6157 -13 1053 320 125 28 chr4 133921955 133922754 -50365908 - L3 LINE CR1 -67 1510 634 364 278 113 58 chr4 133922799 133923162 -50365500 + L1MC5 LINE L1 6747 7129 -832 22 0 0 0 chr4 133924002 133924024 -50364638 + AT_rich Low_complexity Low_complexity 1 22 0 183 42 0 0 chr4 133926369 133926393 -50362269 + (T)n Simple_repeat Simple_repeat 1 24 0 31 76 0 0 chr4 133927327 133927393 -50361269 + AT_rich Low_complexity Low_complexity 1 66 0 194 325 48 0 chr4 133928286 133928369 -50360293 + L2 LINE L2 3225 3311 -2 21 89 0 0 chr4 133928695 133928751 -50359911 + AT_rich Low_complexity Low_complexity 1 56 0 42 20 0 0 chr4 133928903 133928952 -50359710 + AT_rich Low_complexity Low_complexity 1 49 0 1156 150 0 0 chr4 133929142 133929329 -50359333 + MLT2D LTR ERVL 1 187 -227 290 138 0 17 chr4 133929404 133929462 -50359200 + MLT2C2 LTR ERVL 408 464 0 1562 181 30 0 chr4 133929622 133929917 -50358745 - AluJo SINE Alu 0 306 4 307 276 26 26 chr4 133932839 133932955 -50355707 + MIR3 SINE MIR 72 187 -21 573 317 63 37 chr4 133932981 133933239 -50355423 + MLT2E LTR ERVL 4 276 -352 366 306 194 6 chr4 133933323 133933493 -50355169 + MLT2E LTR ERVL 425 626 -2 359 287 41 25 chr4 133935078 133935200 -50353462 - MLT1J LTR MaLR 0 511 388 1648 267 99 16 chr4 133935236 133935782 -50352880 + MLT1E1 LTR MaLR 1 591 -63 180 111 0 0 chr4 133935868 133935895 -50352767 + (GAA)n Simple_repeat Simple_repeat 2 28 0 368 257 55 18 chr4 133935897 133936006 -50352656 - MLT1J LTR MaLR -262 249 137 215 352 24 8 chr4 133937084 133937209 -50351453 - MIR SINE MIR -68 194 68 22 0 0 0 chr4 133939579 133939601 -50349061 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 133940136 133940158 -50348504 + AT_rich Low_complexity Low_complexity 1 22 0 211 27 27 27 chr4 133940640 133940677 -50347985 + (TTTAA)n Simple_repeat Simple_repeat 3 39 0 45 75 0 0 chr4 133940833 133940927 -50347735 + AT_rich Low_complexity Low_complexity 1 94 0 28 0 0 0 chr4 133941886 133941914 -50346748 + AT_rich Low_complexity Low_complexity 1 28 0 241 285 75 60 chr4 133942256 133942456 -50346206 + L1ME LINE L1 5526 5728 -393 346 299 83 19 chr4 133942481 133942638 -50346024 - LTR16C LTR ERVL -2 489 323 2608 163 12 38 chr4 133943157 133943636 -50345026 - MER52A LTR ERV1 -61 1694 1228 1032 241 184 19 chr4 133943641 133944060 -50344602 - MER52A LTR ERV1 -1215 540 53 1433 296 82 12 chr4 133944547 133945209 -50343453 - L1M4c LINE L1 -4348 2215 1356 2028 131 7 0 chr4 133945209 133945507 -50343155 - AluSp SINE Alu -13 300 1 1433 296 82 12 chr4 133945507 133945593 -50343069 - L1M4c LINE L1 -5207 1356 1277 1101 235 94 53 chr4 133945637 133946103 -50342559 + L1ME1 LINE L1 3895 4389 -1757 1252 207 73 25 chr4 133946103 133946378 -50342284 - AluJo SINE Alu -24 288 1 1101 235 94 53 chr4 133946378 133946473 -50342189 + L1ME1 LINE L1 4389 4479 -1667 2019 269 31 61 chr4 133946475 133947346 -50341316 + L1ME1 LINE L1 5254 6098 -68 369 245 49 35 chr4 133947275 133947418 -50341244 + L1MA10 LINE L1 6187 6331 -3 * 1792 195 5 5 chr4 133949650 133950020 -50338642 + L1MC3 LINE L1 7399 7768 -17 574 174 0 0 chr4 133950958 133951056 -50337606 - MER73 LTR ERVL -143 501 404 * 1115 186 36 43 chr4 133951052 133951305 -50337357 - MER73 LTR ERVL -392 252 2 1543 352 49 22 chr4 133951330 133952391 -50336271 + ERVL LTR ERVL 3234 4631 -677 1093 333 27 11 chr4 133953035 133953401 -50335261 + LTR16A LTR ERVL 76 447 -3 2123 60 60 0 chr4 133953490 133953772 -50334890 - AluY SINE Alu -12 299 1 434 266 70 61 chr4 133954842 133955056 -50333606 + LTR33 LTR ERVL 30 245 -276 337 311 122 45 chr4 133956355 133956706 -50331956 + L2 LINE L2 2690 3060 -212 277 308 42 84 chr4 133956866 133957009 -50331653 + L2 LINE L2 3134 3270 -2 214 346 13 70 chr4 133957229 133957385 -50331277 + L2 LINE L2 3134 3280 -33 21 0 0 0 chr4 133959106 133959127 -50329535 + AT_rich Low_complexity Low_complexity 1 21 0 219 69 0 0 chr4 133960049 133960078 -50328584 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 400 289 20 46 chr4 133961349 133961546 -50327116 + L2 LINE L2 3113 3304 -9 302 356 0 10 chr4 133961703 133961804 -50326858 - MER5A DNA MER1_type -6 183 84 2081 175 23 0 chr4 133962036 133962430 -50326232 + MER57A LTR ERV1 1 403 0 1854 128 31 58 chr4 133963616 133963998 -50324664 + THE1C LTR MaLR 1 372 -3 24 32 0 0 chr4 133964730 133964761 -50323901 + AT_rich Low_complexity Low_complexity 1 31 0 266 309 31 10 chr4 133964930 133965027 -50323635 + MIR SINE MIR 12 111 -97 258 282 39 13 chr4 133965154 133965232 -50323430 - MIR SINE MIR -143 119 40 185 301 32 43 chr4 133965691 133965784 -50322878 + L2 LINE L2 2455 2546 -768 34 0 0 0 chr4 133965797 133965831 -50322831 + AT_rich Low_complexity Low_complexity 1 34 0 1447 153 3 94 chr4 133965831 133966138 -50322524 - AluJb SINE Alu -22 290 12 2352 84 10 3 chr4 133966612 133966923 -50321739 + AluSp SINE Alu 1 313 0 440 229 9 19 chr4 133967001 133967106 -50321556 - MER67D LTR ERV1 -100 414 311 2726 224 69 51 chr4 133967225 133967602 -50321060 + L1MCb LINE L1 558 927 -5818 267 31 0 0 chr4 133967602 133967634 -50321028 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2726 224 69 51 chr4 133967634 133968028 -50320634 + L1MCb LINE L1 927 1312 -5433 299 85 21 0 chr4 133968028 133968075 -50320587 + (TA)n Simple_repeat Simple_repeat 1 48 0 2726 224 69 51 chr4 133968075 133968730 -50319932 + L1MCb LINE L1 1312 2197 -4548 2171 162 13 18 chr4 133969280 133969662 -50319000 + Tigger2a DNA MER2_type 1 380 -54 1698 162 3 45 chr4 133969690 133970004 -50318658 + AluJb SINE Alu 1 301 -11 4522 206 25 6 chr4 133970005 133971523 -50317139 - L1PB4 LINE L1 -16 6140 4595 333 250 15 0 chr4 133971559 133971627 -50317035 + Tigger2a DNA MER2_type 376 444 0 328 307 94 70 chr4 133971825 133972313 -50316349 + L1MCb LINE L1 3571 4070 -2494 * 481 330 96 31 chr4 133972309 133972975 -50315687 + L1MCb LINE L1 4305 5010 -1554 1925 156 32 27 chr4 133974471 133974844 -50313818 + THE1C LTR MaLR 1 375 0 378 326 59 28 chr4 133977330 133977753 -50310909 + HAL1b LINE L1 55 490 -858 2224 66 0 0 chr4 133978302 133978575 -50310087 + AluY SINE Alu 31 303 -8 2475 55 0 0 chr4 133978575 133978882 -50309780 + AluY SINE Alu 1 307 -4 719 308 104 64 chr4 133978949 133980014 -50308648 + L1MEc LINE L1 2157 3221 -2994 21 0 0 0 chr4 133980166 133980187 -50308475 + AT_rich Low_complexity Low_complexity 1 21 0 626 241 92 24 chr4 133980334 133980625 -50308037 + L1M4 LINE L1 3608 3918 -2228 21 36 0 0 chr4 133980633 133980661 -50308001 + AT_rich Low_complexity Low_complexity 1 28 0 34 24 0 0 chr4 133981944 133981985 -50306677 + AT_rich Low_complexity Low_complexity 1 41 0 7649 25 0 0 chr4 133981985 133983666 -50304996 - L1PA3 LINE L1 -8 6147 4467 627 108 0 0 chr4 133985715 133985808 -50302854 + (TA)n Simple_repeat Simple_repeat 1 93 0 429 279 133 62 chr4 133986008 133986331 -50302331 - MLT1L LTR MaLR 0 615 270 369 0 0 0 chr4 133987598 133987639 -50301023 + (TG)n Simple_repeat Simple_repeat 1 41 0 559 236 28 26 chr4 133987678 133987932 -50300730 + LTR52 LTR ERVL 4 297 -124 229 306 39 78 chr4 133988033 133988213 -50300449 - L1MC/D LINE L1 -357 5885 5713 255 271 52 52 chr4 133988541 133988756 -50299906 - L1MC/D LINE L1 -1147 4999 4787 32 0 0 0 chr4 133988825 133988857 -50299805 + AT_rich Low_complexity Low_complexity 1 32 0 349 333 101 9 chr4 133989714 133990032 -50298630 - L1MC/D LINE L1 -1891 4255 3909 201 74 0 0 chr4 133991591 133991618 -50297044 + (A)n Simple_repeat Simple_repeat 1 27 0 3163 172 32 56 chr4 133992522 133993267 -50295395 - LTR8A LTR ERV1 0 727 1 322 231 0 93 chr4 133993409 133993517 -50295145 - Tigger5 DNA MER2_type 0 2323 2226 269 214 0 18 chr4 133993513 133993569 -50295093 - Tigger5 DNA MER2_type -2268 55 1 * 24256 167 12 13 chr4 133994010 133999575 -50289087 + L1P3 LINE L1 2 5602 -859 997 185 36 0 chr4 133999833 134000028 -50288634 + MER3 DNA MER1_type 1 202 -7 296 242 176 0 chr4 134000085 134000250 -50288412 - Charlie2 DNA MER1_type -110 2752 2559 34 0 0 0 chr4 134000356 134000390 -50288272 + AT_rich Low_complexity Low_complexity 1 34 0 1101 97 0 0 chr4 134000394 134000548 -50288114 - L1PA7 LINE L1 -6 6148 5995 11622 123 25 6 chr4 134000550 134002361 -50286301 - L1P3 LINE L1 -4618 1833 7 1439 199 26 13 chr4 134002731 134003033 -50285629 - AluJb SINE Alu -6 306 1 565 272 60 13 chr4 134003107 134003342 -50285320 - Charlie2a DNA MER1_type -1115 1747 1502 644 277 152 53 chr4 134003439 134003548 -50285114 - Charlie2 DNA MER1_type -2114 668 571 2392 166 29 11 chr4 134003548 134004001 -50284661 - LOR1b LTR ERV1 0 461 1 644 277 152 53 chr4 134004001 134004470 -50284192 - Charlie2 DNA MER1_type -2211 571 32 1463 176 26 77 chr4 134005805 134006157 -50282505 - MLT2D LTR ERVL -2 412 79 201 308 84 65 chr4 134007672 134007779 -50280883 + L2 LINE L2 3149 3257 -15 569 121 11 0 chr4 134007833 134007924 -50280738 - MLT2D LTR ERVL -319 95 4 180 0 0 0 chr4 134008148 134008168 -50280494 + (CATAT)n Simple_repeat Simple_repeat 2 21 0 2117 117 47 36 chr4 134008779 134009139 -50279523 + THE1B LTR MaLR 1 364 0 10391 104 29 5 chr4 134009139 134010683 -50277979 + THE1B-int LTR MaLR 1 1580 0 1887 140 56 36 chr4 134010684 134011040 -50277622 + THE1B LTR MaLR 2 364 0 22 35 0 0 chr4 134011756 134011785 -50276877 + AT_rich Low_complexity Low_complexity 1 29 0 254 309 45 9 chr4 134012526 134012636 -50276026 + MER117 DNA MER1_type 2 115 -82 897 39 23 15 chr4 134013142 134013272 -50275390 + (TTTC)n Simple_repeat Simple_repeat 4 134 0 1946 140 0 0 chr4 134013456 134013735 -50274927 - AluJo SINE Alu -28 284 6 541 248 62 6 chr4 134013893 134014054 -50274608 - MIR SINE MIR -41 221 52 335 299 107 16 chr4 134014151 134014338 -50274324 + L2 LINE L2 2555 2758 -556 1172 123 11 37 chr4 134014343 134014530 -50274132 - AluSg/x SINE Alu -12 298 117 918 99 14 14 chr4 134015101 134015243 -50273419 - FLAM_C SINE Alu -1 142 1 586 216 10 112 chr4 134015246 134015452 -50273210 + MLT1F1 LTR MaLR 1 176 -366 2321 91 0 0 chr4 134015455 134015770 -50272892 - AluSq SINE Alu 0 315 1 221 368 0 43 chr4 134016356 134016541 -50272121 + (TATATG)n Simple_repeat Simple_repeat 3 179 0 981 194 0 0 chr4 134016622 134016792 -50271870 + FRAM SINE Alu 1 170 -6 1081 230 81 21 chr4 134017026 134017361 -50271301 + L1ME1 LINE L1 5755 6109 -57 240 35 0 0 chr4 134017433 134017462 -50271200 + (CA)n Simple_repeat Simple_repeat 1 29 0 28 0 0 0 chr4 134018214 134018242 -50270420 + AT_rich Low_complexity Low_complexity 1 28 0 7417 39 0 40 chr4 134018245 134019241 -50269421 - L1PA5 LINE L1 -3 6151 5174 2297 95 0 13 chr4 134019241 134019556 -50269106 - AluY SINE Alu 0 311 1 7417 39 0 40 chr4 134019556 134019662 -50269000 - L1PA5 LINE L1 -980 5174 5065 797 213 23 65 chr4 134019762 134020041 -50268621 - LTR1 LTR ERV1 -565 220 1 2079 172 23 0 chr4 134020043 134020392 -50268270 - LTR1-int LTR ERV1 -1 7090 6734 * 5220 179 2 7 chr4 134020389 134021255 -50267407 - LTR1-int LTR ERV1 -489 6602 5741 1028 230 110 61 chr4 134021897 134021953 -50266709 - MLT1C LTR MaLR 0 467 415 3027 137 86 6 chr4 134021953 134022441 -50266221 - MER1A DNA MER1_type 0 527 1 1028 230 110 61 chr4 134022441 134022776 -50265886 - MLT1C LTR MaLR -52 415 57 233 270 32 0 chr4 134022887 134022950 -50265712 + L1MA9 LINE L1 3510 3574 -2572 * 500 291 25 25 chr4 134022949 134023190 -50265472 - L1MC3 LINE L1 -1506 6279 6039 1750 257 67 16 chr4 134023211 134023838 -50264824 - L1MC4a LINE L1 -13 7795 7137 570 231 11 43 chr4 134023861 134024047 -50264615 - L1MC4a LINE L1 -1295 6513 6334 1282 221 32 25 chr4 134024186 134024471 -50264191 - AluJo SINE Alu -17 295 9 225 143 20 0 chr4 134024792 134024841 -50263821 + L1MC4 LINE L1 6652 6701 -1341 21 0 0 0 chr4 134025535 134025556 -50263106 + AT_rich Low_complexity Low_complexity 1 21 0 9473 104 28 2 chr4 134025792 134027755 -50260907 - L1PA8A LINE L1 -266 5865 3853 2495 156 2 0 chr4 134027752 134028170 -50260492 + L1PA8A LINE L1 3415 3833 -2313 * 2737 225 20 17 chr4 134028421 134029080 -50259582 - MER67B LTR ERV1 0 661 1 1849 164 24 0 chr4 134029441 134029739 -50258923 - AluSx SINE Alu -7 305 1 4252 248 30 32 chr4 134029776 134029820 -50258842 + L1MA9 LINE L1 4034 4077 -2235 1987 144 77 50 chr4 134029820 134030237 -50258425 + MSTA LTR MaLR 1 428 0 4252 248 30 32 chr4 134030237 134032438 -50256224 + L1MA9 LINE L1 4077 6274 -38 42 48 0 0 chr4 134032663 134032726 -50255936 + AT_rich Low_complexity Low_complexity 1 63 0 22 35 0 0 chr4 134032802 134032831 -50255831 + AT_rich Low_complexity Low_complexity 1 29 0 26 50 0 0 chr4 134032914 134032954 -50255708 + AT_rich Low_complexity Low_complexity 1 40 0 28 48 0 0 chr4 134033882 134033924 -50254738 + AT_rich Low_complexity Low_complexity 1 42 0 238 305 47 31 chr4 134034851 134034979 -50253683 - MLT1L LTR MaLR -3 612 483 652 25 0 0 chr4 134036028 134036109 -50252553 + L1P LINE L1 4742 4822 -1324 241 57 0 0 chr4 134036209 134036244 -50252418 + L1PA6 LINE L1 6113 6147 -7 206 219 14 27 chr4 134036259 134036332 -50252330 + (TA)n Simple_repeat Simple_repeat 1 72 0 1546 47 0 0 chr4 134037266 134037458 -50251204 + L1P1 LINE L1 5611 5802 -353 1524 273 42 36 chr4 134037991 134038242 -50250420 + MER90 LTR ERV1 3 251 -324 2167 108 27 0 chr4 134038242 134038537 -50250125 - AluSp SINE Alu -10 303 1 1524 273 42 36 chr4 134038537 134038834 -50249828 + MER90 LTR ERV1 251 554 -21 1730 280 44 29 chr4 134038895 134039480 -50249182 + MLT1E2 LTR MaLR 28 621 -5 25 0 0 0 chr4 134040385 134040410 -50248252 + AT_rich Low_complexity Low_complexity 1 25 0 5036 143 20 24 chr4 134040537 134041572 -50247090 + L1PA15 LINE L1 5129 6159 -6 186 299 0 15 chr4 134041601 134041668 -50246994 + MIR SINE MIR 194 259 -3 42175 38 25 2 chr4 134042908 134048788 -50239874 + L1PA2 LINE L1 1 6023 -132 21 0 0 0 chr4 134049157 134049178 -50239484 + AT_rich Low_complexity Low_complexity 1 21 0 23 78 0 0 chr4 134049561 134049612 -50239050 + AT_rich Low_complexity Low_complexity 1 51 0 39 80 0 0 chr4 134049696 134049784 -50238878 + AT_rich Low_complexity Low_complexity 1 88 0 1734 178 11 0 chr4 134049806 134050093 -50238569 - AluJb SINE Alu -22 290 1 22 70 0 0 chr4 134050252 134050295 -50238367 + AT_rich Low_complexity Low_complexity 1 43 0 1873 200 103 102 chr4 134050490 134051235 -50237427 + LTR1B LTR ERV1 1 746 -80 7839 209 38 51 chr4 134051469 134053666 -50234996 + HUERS-P2 LTR ERV1 75 2145 -943 * 17075 169 10 11 chr4 134053663 134055098 -50233564 + HUERS-P2 LTR ERV1 2521 3955 -3136 1056 387 139 12 chr4 134055098 134055421 -50233241 - THE1B LTR MaLR 0 364 1 17075 169 10 11 chr4 134055421 134056744 -50231918 + HUERS-P2 LTR ERV1 3955 5277 -1814 25 0 0 0 chr4 134057313 134057338 -50231324 + AT_rich Low_complexity Low_complexity 1 25 0 1164 189 44 98 chr4 134058516 134058834 -50229828 + AluJo SINE Alu 1 301 -1 351 167 21 21 chr4 134058993 134059089 -50229573 + CT-rich Low_complexity Low_complexity 3 98 0 239 372 58 0 chr4 134059334 134059471 -50229191 + L2 LINE L2 1565 1709 -1605 40 59 0 0 chr4 134059940 134060008 -50228654 + AT_rich Low_complexity Low_complexity 1 68 0 560 143 10 10 chr4 134062979 134063077 -50225585 + MER4A LTR ERV1 1 98 -566 1619 159 159 70 chr4 134063077 134063448 -50225214 + MER4A LTR ERV1 261 664 0 2278 69 3 0 chr4 134063555 134063870 -50224792 + AluY SINE Alu 5 320 0 22 0 0 0 chr4 134063902 134063924 -50224738 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 134064424 134064445 -50224217 + AT_rich Low_complexity Low_complexity 1 21 0 312 276 82 0 chr4 134064468 134064566 -50224096 - MER112 DNA MER1_type -7 253 148 1200 260 189 36 chr4 134067505 134068035 -50220627 + L1M4c LINE L1 26 636 -5748 * 2047 228 23 12 chr4 134068032 134068511 -50220151 - L1MB1 LINE L1 -959 5187 4704 * 3684 186 22 63 chr4 134068510 134069483 -50219179 + L1MB1 LINE L1 5173 6127 -62 23 0 0 0 chr4 134069494 134069517 -50219145 + AT_rich Low_complexity Low_complexity 1 23 0 506 234 105 58 chr4 134069617 134069848 -50218814 + LTR1B LTR ERV1 572 1003 -17 1786 186 74 76 chr4 134070547 134071101 -50217561 + MER34B LTR ERV1 11 563 -2 224 338 78 42 chr4 134071342 134071484 -50217178 - MIR SINE MIR -63 199 53 28 91 0 0 chr4 134072223 134072300 -50216362 + AT_rich Low_complexity Low_complexity 1 77 0 39 22 0 0 chr4 134072979 134073025 -50215637 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr4 134073210 134073231 -50215431 + AT_rich Low_complexity Low_complexity 1 21 0 1506 170 48 22 chr4 134073467 134073778 -50214884 - LTR1B LTR ERV1 0 826 508 23 68 0 0 chr4 134075541 134075585 -50213077 + AT_rich Low_complexity Low_complexity 1 44 0 2276 150 28 58 chr4 134075610 134076111 -50212551 - LTR19A LTR ERV1 0 486 1 23 0 0 0 chr4 134076537 134076560 -50212102 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr4 134076592 134076626 -50212036 + AT_rich Low_complexity Low_complexity 1 34 0 4120 121 56 17 chr4 134076776 134077439 -50211223 + LTR8 LTR ERV1 1 689 -2 27 29 0 0 chr4 134077511 134077545 -50211117 + AT_rich Low_complexity Low_complexity 1 34 0 202 260 20 0 chr4 134077574 134077624 -50211038 + MIR SINE MIR 193 243 -19 249 33 0 0 chr4 134077641 134077671 -50210991 + (TAG)n Simple_repeat Simple_repeat 2 31 0 672 283 28 40 chr4 134077728 134077975 -50210687 - LTR16A1 LTR ERVL -46 411 168 23 101 0 0 chr4 134078902 134078981 -50209681 + AT_rich Low_complexity Low_complexity 1 79 0 326 253 40 10 chr4 134079019 134079118 -50209544 + MIR SINE MIR 95 196 -66 24 32 0 0 chr4 134079194 134079225 -50209437 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 134080203 134080224 -50208438 + AT_rich Low_complexity Low_complexity 1 21 0 1819 183 0 36 chr4 134080568 134080929 -50207733 - MER4E LTR ERV1 0 779 432 7668 69 4 6 chr4 134080932 134081909 -50206753 - HERVL-A1 LTR ERVL -197 5457 4483 * 28450 88 4 4 chr4 134081903 134085676 -50202986 - HERVL-A1 LTR ERVL -1880 3774 1 3163 86 9 7 chr4 134085676 134086119 -50202543 - MLT2A1 LTR ERVL 0 444 1 397 253 32 38 chr4 134087262 134087420 -50201242 + L1ME1 LINE L1 5160 5316 -830 2354 242 66 28 chr4 134087486 134088242 -50200420 + L1ME1 LINE L1 5354 6138 -28 2237 104 13 0 chr4 134088316 134088623 -50200039 - AluY SINE Alu 0 311 1 22 0 0 0 chr4 134088628 134088650 -50200012 + AT_rich Low_complexity Low_complexity 1 22 0 1214 229 44 7 chr4 134088925 134089200 -50199462 - AluJo SINE Alu -15 287 3 233 211 86 55 chr4 134089398 134089526 -50199136 - L1ME LINE L1 -222 5899 5768 1518 243 39 55 chr4 134089850 134089954 -50198708 - L1M4 LINE L1 -2652 3494 3390 1963 132 35 44 chr4 134089954 134090294 -50198368 + MER1B DNA MER1_type 1 337 0 1518 243 39 55 chr4 134090294 134090880 -50197782 - L1M4 LINE L1 -2756 3390 2815 310 274 145 22 chr4 134091012 134091191 -50197471 - L1ME LINE L1 -625 5553 5353 2173 101 3 0 chr4 134091302 134091590 -50197072 - AluSg SINE Alu -21 289 1 21 82 0 0 chr4 134092904 134092953 -50195709 + AT_rich Low_complexity Low_complexity 1 49 0 639 294 69 12 chr4 134093197 134093442 -50195220 + MIR SINE MIR 1 259 -3 2087 213 12 10 chr4 134093640 134094058 -50194604 + MLT2B1 LTR ERVL 2 420 -100 535 322 78 33 chr4 134094618 134095148 -50193514 - L2 LINE L2 -82 3231 2503 246 375 16 31 chr4 134095521 134095649 -50193013 - L2 LINE L2 -2 3270 3145 22 35 0 0 chr4 134096002 134096031 -50192631 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 134096302 134096330 -50192332 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr4 134096404 134096440 -50192222 + AT_rich Low_complexity Low_complexity 1 36 0 38 61 0 0 chr4 134097031 134097097 -50191565 + AT_rich Low_complexity Low_complexity 1 66 0 704 303 78 30 chr4 134097136 134097683 -50190979 + MLT1G LTR MaLR 3 553 -2 521 271 67 48 chr4 134100977 134101187 -50187475 - MER58C DNA MER1_type 0 215 2 183 324 0 83 chr4 134102491 134102599 -50186063 - MIR SINE MIR -136 126 28 724 185 0 8 chr4 134103542 134103685 -50184977 + FLAM_A SINE Alu 2 143 0 243 276 0 0 chr4 134105073 134105131 -50183531 + GA-rich Low_complexity Low_complexity 3 60 0 334 245 47 66 chr4 134105717 134105823 -50182839 - L2 LINE L2 0 3272 3169 1132 69 0 0 chr4 134105929 134106074 -50182588 - L1P LINE L1 -1108 5038 4894 815 320 80 80 chr4 134106097 134106880 -50181782 - L2 LINE L2 -220 3052 2270 2236 115 0 16 chr4 134106880 134107194 -50181468 + AluSx SINE Alu 1 309 -3 815 320 80 80 chr4 134107194 134107454 -50181208 - L2 LINE L2 -1002 2270 2011 1173 169 0 0 chr4 134108334 134108517 -50180145 - MLT1D LTR MaLR 0 505 323 423 286 114 29 chr4 134108843 134109116 -50179546 - L2 LINE L2 -1641 1673 1378 229 236 68 135 chr4 134109899 134110047 -50178615 - MIR SINE MIR -37 225 88 550 379 78 16 chr4 134111343 134111858 -50176804 + L2 LINE L2 1769 2315 -999 5934 194 30 40 chr4 134111863 134114054 -50174608 + L1MA9 LINE L1 3981 6165 -147 504 48 0 0 chr4 134114067 134114130 -50174532 + (GGAA)n Simple_repeat Simple_repeat 4 66 0 244 237 113 31 chr4 134115455 134115552 -50173110 + MIR SINE MIR 158 262 0 279 354 130 12 chr4 134115556 134115717 -50172945 - MIR SINE MIR -82 180 1 448 379 125 24 chr4 134116495 134117422 -50171240 + L1ME LINE L1 3342 4362 -1784 21 36 0 0 chr4 134117463 134117491 -50171171 + AT_rich Low_complexity Low_complexity 1 28 0 270 268 0 0 chr4 134117491 134117562 -50171100 + L1ME LINE L1 4517 4587 -1559 1175 23 0 0 chr4 134117596 134117729 -50170933 + AluY SINE Alu 168 300 -11 810 258 83 69 chr4 134117729 134118306 -50170356 + L1ME LINE L1 4649 5233 -913 1772 154 7 11 chr4 134118370 134118650 -50170012 + AluJb SINE Alu 3 281 -31 520 342 75 14 chr4 134118758 134119185 -50169477 + L1ME LINE L1 5370 5822 -348 395 315 91 18 chr4 134119779 134119998 -50168664 + MIR SINE MIR 28 262 0 927 207 0 6 chr4 134120504 134120678 -50167984 - MLT1C LTR MaLR -4 463 291 382 239 9 62 chr4 134120730 134120872 -50167790 - MLT1A1 LTR MaLR -33 363 199 5258 150 17 1 chr4 134120880 134122413 -50166249 - L1PA16 LINE L1 -1 6165 4612 333 192 0 0 chr4 134122414 134122487 -50166175 + L1 LINE L1 4132 4204 -1942 513 201 136 92 chr4 134122688 134122872 -50165790 - MLT1A1 LTR MaLR -172 193 2 1274 161 41 101 chr4 134122873 134123190 -50165472 - MLT1C LTR MaLR -167 300 3 21 0 0 0 chr4 134123466 134123487 -50165175 + AT_rich Low_complexity Low_complexity 1 21 0 294 312 101 7 chr4 134123783 134123921 -50164741 + L2 LINE L2 3160 3310 -3 366 284 0 27 chr4 134124030 134124213 -50164449 + T-rich Low_complexity Low_complexity 3 180 0 249 332 67 47 chr4 134124389 134124582 -50164080 + MIR SINE MIR 66 262 0 24 85 0 0 chr4 134124908 134124967 -50163695 + AT_rich Low_complexity Low_complexity 1 59 0 21 82 0 0 chr4 134125091 134125140 -50163522 + AT_rich Low_complexity Low_complexity 1 49 0 893 190 0 0 chr4 134125140 134125303 -50163359 + MER3 DNA MER1_type 7 122 -87 247 233 10 39 chr4 134125919 134126022 -50162640 + (TAAA)n Simple_repeat Simple_repeat 2 101 0 199 100 0 0 chr4 134127602 134127632 -50161030 - L2 LINE L2 0 3313 3284 254 359 46 15 chr4 134128071 134128202 -50160460 - L2 LINE L2 -203 3069 2935 838 319 45 29 chr4 134128244 134128664 -50159998 - L2 LINE L2 -454 2860 2434 450 0 0 0 chr4 134129136 134129186 -50159476 + (CA)n Simple_repeat Simple_repeat 2 51 0 1549 177 28 103 chr4 134129205 134129640 -50159022 - MLT2B1 LTR ERVL -56 464 63 645 175 66 0 chr4 134129660 134129797 -50158865 - L1MA8 LINE L1 -1 6290 6145 450 209 2 9 chr4 134129797 134129900 -50158762 - MLT2B2 LTR ERVL -314 100 1 249 340 75 11 chr4 134131496 134131590 -50157072 + L2 LINE L2 2978 3077 -236 225 159 0 0 chr4 134131590 134131634 -50157028 + (CA)n Simple_repeat Simple_repeat 2 45 0 184 323 80 45 chr4 134131667 134131868 -50156794 + L2 LINE L2 3104 3311 -2 1805 143 11 0 chr4 134132000 134132279 -50156383 + AluSx SINE Alu 1 282 -30 242 56 28 0 chr4 134132282 134132318 -50156344 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 321 68 0 0 chr4 134133815 134133859 -50154803 + (TG)n Simple_repeat Simple_repeat 2 45 0 987 171 57 0 chr4 134133864 134134057 -50154605 - Tigger2 DNA MER2_type 0 2718 2515 * 3659 167 28 12 chr4 134134056 134134702 -50153960 - Tigger2 DNA MER2_type -1734 984 329 1889 220 57 37 chr4 134134702 134134772 -50153890 + L1MC3 LINE L1 7230 7297 -488 1911 217 30 22 chr4 134134772 134135233 -50153429 - MLT1C LTR MaLR 0 467 3 1889 220 57 37 chr4 134135233 134135707 -50152955 + L1MC3 LINE L1 7297 7785 0 233 258 61 0 chr4 134135718 134135784 -50152878 + MIR SINE MIR 172 241 -21 26 74 0 0 chr4 134135800 134135854 -50152808 + AT_rich Low_complexity Low_complexity 1 54 0 647 290 75 81 chr4 134136374 134136914 -50151748 + L2 LINE L2 2768 3308 -5 1453 186 58 4 chr4 134137143 134137417 -50151245 - AluJb SINE Alu -18 294 6 751 305 140 10 chr4 134139261 134139414 -50149248 + L2 LINE L2 1631 1763 -1551 294 106 0 0 chr4 134139414 134139461 -50149201 + (TG)n Simple_repeat Simple_repeat 2 48 0 751 305 140 10 chr4 134139461 134139714 -50148948 + L2 LINE L2 1763 2090 -1224 2157 119 0 3 chr4 134140532 134140826 -50147836 - AluSq SINE Alu -20 293 1 25 51 0 0 chr4 134141019 134141058 -50147604 + AT_rich Low_complexity Low_complexity 1 39 0 35 40 0 40 chr4 134141122 134141197 -50147465 + AT_rich Low_complexity Low_complexity 1 72 0 27 29 0 0 chr4 134141222 134141256 -50147406 + AT_rich Low_complexity Low_complexity 1 34 0 32 26 0 0 chr4 134141265 134141304 -50147358 + AT_rich Low_complexity Low_complexity 1 39 0 856 240 65 13 chr4 134142267 134142676 -50145986 - MER34 LTR ERV1 0 542 71 234 0 0 0 chr4 134142676 134142702 -50145960 + (TTG)n Simple_repeat Simple_repeat 2 27 0 856 240 65 13 chr4 134142702 134142759 -50145903 - MER34 LTR ERV1 -471 71 18 2399 89 0 0 chr4 134142913 134143217 -50145445 - AluY SINE Alu -7 304 1 2009 152 0 3 chr4 134143263 134143560 -50145102 - AluSx SINE Alu -16 296 1 2015 158 30 108 chr4 134144474 134144880 -50143782 - MSTB LTR MaLR 0 426 59 2320 94 0 0 chr4 134144880 134145188 -50143474 - AluY SINE Alu -3 308 1 2015 158 30 108 chr4 134145188 134145243 -50143419 - MSTB LTR MaLR -367 59 1 21 0 0 0 chr4 134145469 134145490 -50143172 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr4 134146703 134146731 -50141931 + AT_rich Low_complexity Low_complexity 1 28 0 299 254 138 48 chr4 134147116 134147305 -50141357 + LTR37B LTR ERV1 7 212 -256 1663 209 22 19 chr4 134147427 134147791 -50140871 - MLT1A1 LTR MaLR 0 365 1 3845 178 61 17 chr4 134148117 134148937 -50139725 - L1MC2 LINE L1 0 6344 5489 503 282 117 45 chr4 134148954 134149330 -50139332 - MER20B DNA MER1_type -39 744 342 3230 176 41 8 chr4 134149337 134149922 -50138740 - MER6A DNA MER2_type 0 605 2 23 54 0 0 chr4 134151098 134151135 -50137527 + AT_rich Low_complexity Low_complexity 1 37 0 897 149 26 20 chr4 134151292 134151487 -50137175 - L1MA4A LINE L1 0 6303 6108 6418 278 45 12 chr4 134151487 134153312 -50135350 - L1M2 LINE L1 -4958 1891 7 2669 290 40 18 chr4 134153672 134154440 -50134222 + L1PA13 LINE L1 2 786 -6001 2157 258 5 16 chr4 134154486 134155063 -50133599 + L1PA13 LINE L1 1354 1924 -4863 2359 120 27 0 chr4 134155074 134155477 -50133185 - L1P LINE L1 -718 5413 5002 38357 71 1 3 chr4 134155486 134161335 -50127327 - L1PA5 LINE L1 -1 6153 317 678 102 0 0 chr4 134161336 134161424 -50127238 - L1PA5 LINE L1 -6048 98 11 2206 150 0 0 chr4 134161431 134161792 -50126870 - L1P LINE L1 -1126 5020 4660 11571 245 17 26 chr4 134161797 134161809 -50126853 + L1PA8A LINE L1 983 994 -4995 1984 126 0 7 chr4 134161809 134162110 -50126552 + L1PA8A LINE L1 5656 5954 -1 11571 245 17 26 chr4 134162110 134166028 -50122634 + L1PA8A LINE L1 994 4941 -1048 1231 171 21 138 chr4 134166028 134166368 -50122294 - AluJb SINE Alu -2 300 1 11571 245 17 26 chr4 134166368 134166717 -50121945 + L1PA8A LINE L1 4941 5292 -697 3973 178 27 9 chr4 134166714 134167719 -50120943 + L1PA15 LINE L1 5080 6152 -16 * 22 35 0 0 chr4 134167727 134167756 -50120906 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr4 134167913 134167942 -50120720 + AT_rich Low_complexity Low_complexity 1 29 0 24 77 0 0 chr4 134168251 134168303 -50120359 + AT_rich Low_complexity Low_complexity 1 52 0 13062 165 22 13 chr4 134170292 134172687 -50115975 - Tigger1 DNA MER2_type 0 2418 2 23 54 0 0 chr4 134172877 134172914 -50115748 + AT_rich Low_complexity Low_complexity 1 37 0 252 148 61 35 chr4 134173446 134173561 -50115101 + (TA)n Simple_repeat Simple_repeat 2 119 0 374 138 0 11 chr4 134173701 134173788 -50114874 + (TA)n Simple_repeat Simple_repeat 1 86 0 30 59 0 0 chr4 134174006 134174057 -50114605 + AT_rich Low_complexity Low_complexity 1 51 0 303 261 82 15 chr4 134174057 134174191 -50114471 + MER103 DNA DNA 14 156 -10 2317 84 0 0 chr4 134175542 134175839 -50112823 + AluY SINE Alu 4 300 -11 4251 236 27 67 chr4 134176285 134177094 -50111568 - L1MB4 LINE L1 0 6180 5341 201 74 0 0 chr4 134177094 134177121 -50111541 + (TA)n Simple_repeat Simple_repeat 2 28 0 4251 236 27 67 chr4 134177121 134178055 -50110607 - L1MB4 LINE L1 -839 5341 4531 377 21 0 0 chr4 134178055 134178102 -50110560 - MADE1 DNA Mariner -1 79 33 4251 236 27 67 chr4 134178102 134178872 -50109790 - L1MB4 LINE L1 -1649 4531 3732 381 128 12 35 chr4 134178907 134178993 -50109669 + CT-rich Low_complexity Low_complexity 2 85 0 303 247 17 0 chr4 134178998 134179085 -50109577 - L1 LINE L1 -2451 3695 3606 291 193 36 0 chr4 134179093 134179176 -50109486 + CT-rich Low_complexity Low_complexity 2 87 0 1091 76 5 33 chr4 134179179 134179363 -50109299 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 421 204 76 15 chr4 134179391 134179523 -50109139 - L1 LINE L1 -2531 3615 3476 379 170 0 21 chr4 134179521 134179626 -50109036 + L1MC4 LINE L1 5730 5792 -359 * 1936 124 101 6 chr4 134179641 134179979 -50108683 + L1PB1 LINE L1 5782 6151 0 3920 210 10 17 chr4 134279990 134281402 -50007260 - L1P5 LINE L1 -498 5653 4255 2462 65 3 0 chr4 134281529 134281835 -50006827 - AluY SINE Alu -4 307 1 322 373 129 34 chr4 134281856 134282326 -50006336 + L2 LINE L2 2561 3078 -194 750 335 60 45 chr4 134282983 134283520 -50005142 + ERVL LTR ERVL 1032 1576 -3420 1934 267 21 44 chr4 134283737 134284397 -50004265 + L1MB7 LINE L1 16 660 -5882 3647 221 38 13 chr4 134284422 134285944 -50002718 + L1MB7 LINE L1 5128 6681 -1 630 316 54 49 chr4 134285956 134286343 -50002319 + ERVL LTR ERVL 1857 2244 -2752 180 0 0 0 chr4 134286381 134286401 -50002261 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 6247 111 37 3 chr4 134286401 134287828 -50000834 - L1PA10 LINE L1 -21 6147 4663 347 301 77 0 chr4 134287931 134288074 -50000588 + L2 LINE L2 3160 3313 0 31 26 0 0 chr4 134288110 134288148 -50000514 + AT_rich Low_complexity Low_complexity 1 38 0 223 387 68 39 chr4 134288190 134288469 -50000193 - L2 LINE L2 -95 3177 2891 4935 172 48 13 chr4 134288473 134289791 -49998871 + L1MA8 LINE L1 4924 6291 0 352 337 58 58 chr4 134289807 134290137 -49998525 - L2 LINE L2 -430 2884 2552 210 118 0 0 chr4 134290137 134290171 -49998491 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 352 337 58 58 chr4 134290171 134290187 -49998475 - L2 LINE L2 -761 2553 2538 233 374 43 0 chr4 134290315 134290454 -49998208 - L2 LINE L2 -234 3079 2935 21 71 0 0 chr4 134290588 134290630 -49998032 + AT_rich Low_complexity Low_complexity 1 42 0 410 350 61 24 chr4 134291967 134292213 -49996449 - MIR SINE MIR -2 260 6 302 278 45 23 chr4 134293582 134293715 -49994947 + L1ME4a LINE L1 5986 6121 0 849 121 7 0 chr4 134294984 134295125 -49993537 - L1P LINE L1 -1609 4537 4396 659 333 21 48 chr4 134295180 134295513 -49993149 + ERVL LTR ERVL 2388 2711 -2285 267 237 45 28 chr4 134295652 134295782 -49992880 + ERVL LTR ERVL 5170 5346 -363 1114 188 9 45 chr4 134295787 134296011 -49992651 + AluJb SINE Alu 5 220 -92 230 0 33 0 chr4 134296011 134296041 -49992621 + (TG)n Simple_repeat Simple_repeat 2 32 0 293 167 33 0 chr4 134296530 134296590 -49992072 + L1 LINE L1 4497 4558 -1588 272 233 70 23 chr4 134296591 134296677 -49991985 - L2 LINE L2 -3 3310 3221 24 77 0 0 chr4 134297215 134297267 -49991395 + AT_rich Low_complexity Low_complexity 1 52 0 1983 134 3 10 chr4 134298333 134298632 -49990030 + AluSx SINE Alu 1 297 -15 21 36 0 0 chr4 134303496 134303524 -49985138 + AT_rich Low_complexity Low_complexity 1 28 0 2094 125 0 0 chr4 134304197 134304493 -49984169 - AluSx SINE Alu -16 296 1 180 0 0 0 chr4 134304579 134304599 -49984063 + (TTG)n Simple_repeat Simple_repeat 2 21 0 28 0 0 0 chr4 134304984 134305012 -49983650 + AT_rich Low_complexity Low_complexity 1 28 0 438 230 40 26 chr4 134305052 134305204 -49983458 - MER69 DNA AcHobo -9 2517 2364 2312 128 27 8 chr4 134305267 134305633 -49983029 - THE1C LTR MaLR 0 375 3 8710 145 39 42 chr4 134305635 134307218 -49981444 - THE1C-int LTR MaLR 0 1580 3 2121 152 33 14 chr4 134307220 134307588 -49981074 - THE1C LTR MaLR 0 375 1 1762 197 23 8 chr4 134307603 134307938 -49980724 + Tigger1 DNA MER2_type 27 369 -2049 2053 209 70 17 chr4 134307938 134308076 -49980586 - LTR22 LTR ERVK 0 509 380 186 43 0 0 chr4 134308076 134308099 -49980563 + (CAG)n Simple_repeat Simple_repeat 3 25 0 2053 209 70 17 chr4 134308099 134308443 -49980219 - LTR22 LTR ERVK -129 380 1 1762 197 23 8 chr4 134308443 134308458 -49980204 + Tigger1 DNA MER2_type 369 382 -2036 22803 95 4 3 chr4 134308462 134311524 -49977138 - HERVK22 LTR ERVK -8 6829 3764 18476 104 25 1 chr4 134311503 134314107 -49974555 - HERVK22 LTR ERVK -4171 2666 1 * 1564 195 81 19 chr4 134314116 134314568 -49974094 - LTR22 LTR ERVK -6 452 1 1212 152 39 30 chr4 134314573 134314803 -49973859 + Tigger1 DNA MER2_type 366 597 -1821 * 2517 133 28 16 chr4 134314794 134315222 -49973440 + Tigger1 DNA MER2_type 1296 1728 -690 22 70 0 0 chr4 134315360 134315403 -49973259 + AT_rich Low_complexity Low_complexity 1 43 0 25 31 0 0 chr4 134315564 134315596 -49973066 + AT_rich Low_complexity Low_complexity 1 32 0 941 235 87 63 chr4 134316404 134316781 -49971881 + MER39 LTR ERV1 186 707 0 396 337 10 50 chr4 134317933 134317994 -49970668 - MIR SINE MIR -13 195 133 1941 215 49 26 chr4 134317994 134318500 -49970162 + MLT2B1 LTR ERVL 1 518 -2 396 337 10 50 chr4 134318500 134318636 -49970026 - MIR SINE MIR -75 133 3 22 99 0 0 chr4 134319734 134319805 -49968857 + AT_rich Low_complexity Low_complexity 1 71 0 618 286 99 47 chr4 134320818 134321223 -49967439 - MLT1J2 LTR MaLR -24 426 1 438 313 54 27 chr4 134322042 134322266 -49966396 + L1ME LINE L1 5513 5742 -379 233 234 0 0 chr4 134322263 134322327 -49966335 - L1PA15 LINE L1 -159 6006 5943 * 268 295 221 0 chr4 134322409 134322531 -49966131 + MIR SINE MIR 28 176 -86 2808 76 95 0 chr4 134322556 134322965 -49965697 + LTR7 LTR ERV1 1 448 -2 19601 96 30 17 chr4 134322967 134325914 -49962748 + HERVH LTR ERV1 1 2987 -4726 913 128 20 0 chr4 134325908 134326056 -49962606 + HERVH LTR ERV1 3140 3290 -4423 * 8694 140 32 45 chr4 134326046 134327725 -49960937 + HERVH LTR ERV1 3492 5149 -2564 1343 135 23 0 chr4 134327726 134327941 -49960721 + HERVH LTR ERV1 5600 5819 -1894 * 2484 82 48 13 chr4 134327939 134328318 -49960344 + HERVH LTR ERV1 7322 7713 0 2717 76 101 0 chr4 134328318 134328725 -49959937 + LTR7 LTR ERV1 1 448 -2 1151 170 0 0 chr4 134328729 134328917 -49959745 - L1PA15 LINE L1 -34 6131 5944 24 0 0 0 chr4 134329112 134329136 -49959526 + AT_rich Low_complexity Low_complexity 1 24 0 251 215 215 0 chr4 134330026 134330119 -49958543 - MLT1I LTR MaLR 0 409 297 3438 125 37 2 chr4 134330430 134330965 -49957697 - MER41C LTR ERV1 0 554 1 207 162 0 0 chr4 134332752 134332789 -49955873 + (CA)n Simple_repeat Simple_repeat 2 38 0 2307 176 93 145 chr4 134332958 134333764 -49954898 - L1M4c LINE L1 -5603 781 18 29 0 0 0 chr4 134333881 134333910 -49954752 + AT_rich Low_complexity Low_complexity 1 29 0 1219 201 42 72 chr4 134334641 134335043 -49953619 - MLT1B LTR MaLR 0 390 1 24 32 0 0 chr4 134335071 134335102 -49953560 + AT_rich Low_complexity Low_complexity 1 31 0 562 248 68 73 chr4 134335187 134335393 -49953269 - AluJo SINE Alu -85 227 23 1879 113 96 7 chr4 134335393 134335675 -49952987 + AluSx SINE Alu 1 307 -5 215 341 52 22 chr4 134335729 134335864 -49952798 + L2 LINE L2 3171 3309 -4 1518 109 0 14 chr4 134336586 134336796 -49951866 - AluSc SINE Alu -17 292 86 1866 206 65 18 chr4 134336945 134337391 -49951271 + MLT1C LTR MaLR 1 467 0 523 269 23 116 chr4 134337454 134337755 -49950907 + MLT1G LTR MaLR 104 376 -214 1441 179 4 0 chr4 134337761 134338023 -49950639 - L1M2 LINE L1 -473 5818 5556 580 149 18 0 chr4 134338024 134338138 -49950524 + L1MA7 LINE L1 6166 6281 -10 397 226 108 36 chr4 134338152 134338356 -49950306 + MLT1F LTR MaLR 319 595 0 966 205 5 0 chr4 134338387 134338572 -49950090 + MER5A DNA MER1_type 3 188 -1 34 119 0 0 chr4 134339932 134340134 -49948528 + AT_rich Low_complexity Low_complexity 1 202 0 2301 158 3 11 chr4 134340139 134340512 -49948150 + THE1C LTR MaLR 6 375 0 1285 79 22 0 chr4 134340513 134340691 -49947971 + THE1C-int LTR MaLR 2 183 -1397 234 341 0 0 chr4 134340688 134340817 -49947845 - L1 LINE L1 -1096 5050 4922 * 22 35 0 0 chr4 134341064 134341093 -49947569 + AT_rich Low_complexity Low_complexity 1 29 0 338 328 31 72 chr4 134341486 134341776 -49946886 + L2 LINE L2 2970 3247 -66 227 315 0 11 chr4 134341964 134342053 -49946609 - MLT1J LTR MaLR -325 186 99 215 135 0 0 chr4 134342148 134342185 -49946477 + L2 LINE L2 3277 3313 0 13157 150 28 15 chr4 134343314 134345699 -49942963 + Tigger1 DNA MER2_type 2 2417 -1 27 0 0 0 chr4 134345800 134345827 -49942835 + AT_rich Low_complexity Low_complexity 1 27 0 1018 167 17 11 chr4 134346270 134346450 -49942212 - THE1C LTR MaLR -194 181 1 206 339 0 97 chr4 134346875 134346999 -49941663 + MIR SINE MIR 4 115 -147 15274 120 5 71 chr4 134347004 134347126 -49941536 - L1P LINE L1 -1313 4833 4705 2066 134 0 0 chr4 134347126 134347416 -49941246 + AluSq SINE Alu 9 298 -15 15274 120 5 71 chr4 134347416 134350178 -49938484 - L1P LINE L1 -1441 4705 2139 7997 77 24 7 chr4 134350178 134352068 -49936594 + L1PA7 LINE L1 4258 6153 -1 3989 131 26 42 chr4 134352068 134352788 -49935874 + L1PB3 LINE L1 5424 6144 -10 361 241 24 0 chr4 134352893 134352976 -49935686 + MER94 DNA DNA 1 85 -49 399 335 58 27 chr4 134353556 134353744 -49934918 + L2 LINE L2 3118 3311 -2 546 61 0 24 chr4 134353811 134353893 -49934769 - MADE1 DNA Mariner 0 80 1 270 180 0 0 chr4 134354239 134354300 -49934362 + (TG)n Simple_repeat Simple_repeat 2 62 0 991 153 206 9 chr4 134354346 134354574 -49934088 - AluJb SINE Alu -37 275 3 2236 67 7 3 chr4 134354604 134354908 -49933754 - AluY SINE Alu 0 305 1 27 62 0 0 chr4 134355419 134355467 -49933195 + AT_rich Low_complexity Low_complexity 1 48 0 22 56 0 0 chr4 134355541 134355577 -49933085 + AT_rich Low_complexity Low_complexity 1 36 0 3935 190 21 51 chr4 134356332 134357331 -49931331 - LTR5 LTR ERVK 0 969 1 21 82 0 0 chr4 134358526 134358575 -49930087 + AT_rich Low_complexity Low_complexity 1 49 0 2098 125 0 0 chr4 134360776 134361073 -49927589 + AluSx SINE Alu 9 305 -7 22 0 0 0 chr4 134361222 134361244 -49927418 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr4 134362788 134362814 -49925848 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr4 134363286 134363307 -49925355 + AT_rich Low_complexity Low_complexity 1 21 0 375 23 0 0 chr4 134364495 134364539 -49924123 + (TA)n Simple_repeat Simple_repeat 1 44 0 2601 235 114 21 chr4 134364572 134365369 -49923293 - L1MD1 LINE L1 -1 6635 5765 353 179 128 13 chr4 134365369 134365447 -49923215 + MLT1B LTR MaLR 1 87 -380 1116 229 3 62 chr4 134365517 134365840 -49922822 + MLT1B LTR MaLR 87 390 0 3472 236 27 71 chr4 134365842 134367405 -49921257 - L1MD1 LINE L1 -816 5724 4276 504 256 60 6 chr4 134367414 134367582 -49921080 - L1MD1 LINE L1 -4983 1557 1381 1029 264 126 76 chr4 134367591 134368158 -49920504 - L1MD1 LINE L1 -5759 781 19 399 304 59 73 chr4 134369010 134369418 -49919244 + HAL1 LINE L1 38 439 -2068 274 189 0 27 chr4 134369635 134369709 -49918953 + (TA)n Simple_repeat Simple_repeat 1 72 0 408 229 143 38 chr4 134369795 134370005 -49918657 + HAL1 LINE L1 970 1201 -1306 5092 174 20 10 chr4 134370020 134370918 -49917744 + L1M1 LINE L1 12 918 -6647 3242 114 32 12 chr4 134370921 134371480 -49917182 + L1MA3 LINE L1 5736 6305 0 430 245 61 38 chr4 134371512 134371724 -49916938 + HAL1 LINE L1 1246 1462 -1045 351 0 0 0 chr4 134371869 134371908 -49916754 + (GA)n Simple_repeat Simple_repeat 2 40 0 277 78 0 39 chr4 134372074 134372125 -49916537 + (GAAA)n Simple_repeat Simple_repeat 4 52 0 671 299 51 41 chr4 134372492 134372806 -49915856 + Charlie2 DNA MER1_type 7 323 -2539 458 293 57 18 chr4 134372824 134373158 -49915504 + Charlie2 DNA MER1_type 1883 2229 -633 21 82 0 0 chr4 134373923 134373972 -49914690 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr4 134374362 134374383 -49914279 + AT_rich Low_complexity Low_complexity 1 21 0 14856 227 38 23 chr4 134374843 134378964 -49909698 - L1PA15 LINE L1 -2 6814 2429 2119 105 7 3 chr4 134378964 134379258 -49909404 - AluSx SINE Alu -17 295 1 14856 227 38 23 chr4 134379258 134381725 -49906937 - L1PA15 LINE L1 -4387 2429 1 207 418 75 29 chr4 134381994 134382341 -49906321 - L2 LINE L2 -1904 1410 1048 2443 120 3 21 chr4 134382973 134383355 -49905307 - THE1C LTR MaLR 0 375 1 9230 120 44 45 chr4 134383355 134384937 -49903725 - THE1C-int LTR MaLR 0 1580 1 2297 134 30 3 chr4 134384937 134385302 -49903360 - THE1C LTR MaLR 0 375 1 249 348 43 14 chr4 134385565 134385703 -49902959 - L2 LINE L2 -2506 808 667 28 0 0 0 chr4 134385743 134385771 -49902891 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr4 134386035 134386059 -49902603 + AT_rich Low_complexity Low_complexity 1 24 0 576 342 60 17 chr4 134386822 134387120 -49901542 - L2 LINE L2 -791 2523 2213 225 290 0 0 chr4 134387134 134387196 -49901466 + (TA)n Simple_repeat Simple_repeat 2 63 0 240 35 0 0 chr4 134388295 134388324 -49900338 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1982 112 0 51 chr4 134388985 134389299 -49899363 - AluSp SINE Alu -13 300 3 303 62 0 0 chr4 134389303 134389351 -49899311 - Alu SINE Alu 0 300 253 24 67 0 0 chr4 134389589 134389634 -49899028 + AT_rich Low_complexity Low_complexity 1 45 0 2271 179 45 0 chr4 134390869 134391265 -49897397 - LTR42 LTR ERVL -1 494 81 34 84 0 0 chr4 134392144 134392227 -49896435 + AT_rich Low_complexity Low_complexity 1 83 0 224 191 0 0 chr4 134392715 134392757 -49895905 - L2 LINE L2 0 3313 3272 1560 195 10 0 chr4 134393675 134393967 -49894695 - AluJo SINE Alu -17 295 1 21 0 0 0 chr4 134394046 134394067 -49894595 + AT_rich Low_complexity Low_complexity 1 21 0 284 230 10 50 chr4 134394238 134394338 -49894324 + A-rich Low_complexity Low_complexity 5 100 0 2407 179 7 5 chr4 134394431 134394855 -49893807 - MER61B LTR ERV1 0 425 1 251 159 11 57 chr4 134394903 134394991 -49893671 + (CATATA)n Simple_repeat Simple_repeat 3 86 0 22 0 0 0 chr4 134395028 134395050 -49893612 + AT_rich Low_complexity Low_complexity 1 22 0 1430 282 82 23 chr4 134395065 134395657 -49893005 - L1ME3A LINE L1 -23 6147 5533 301 341 38 8 chr4 134395856 134395988 -49892674 - L1ME3A LINE L1 -825 5321 5186 217 277 0 0 chr4 134396340 134396423 -49892239 + T-rich Low_complexity Low_complexity 1 83 0 2337 35 0 0 chr4 134396423 134396706 -49891956 - L1PA2 LINE L1 0 6155 5873 2121 12 0 0 chr4 134396706 134396947 -49891715 + L1PA2 LINE L1 5647 5887 -268 208 250 275 0 chr4 134396964 134397044 -49891618 + L2 LINE L2 1931 2032 -1282 1706 293 56 26 chr4 134397047 134397693 -49890969 + MER76 LTR ERV 1 665 -23 455 311 123 5 chr4 134397715 134397934 -49890728 + L2 LINE L2 2046 2290 -1024 1223 231 57 20 chr4 134398093 134398443 -49890219 + MLT1A1 LTR MaLR 1 363 -2 26 0 0 0 chr4 134398806 134398832 -49889830 + AT_rich Low_complexity Low_complexity 1 26 0 1256 174 53 4 chr4 134398870 134399135 -49889527 - L1MC1 LINE L1 -17 6316 6039 704 83 67 0 chr4 134399135 134399255 -49889407 + Tigger7 DNA MER2_type 2282 2409 -78 851 233 23 41 chr4 134399261 134399480 -49889182 - MER8 DNA MER2_type -24 215 1 322 222 0 32 chr4 134399499 134399562 -49889100 + Tigger7 DNA MER2_type 2427 2487 0 264 324 29 22 chr4 134399576 134399712 -49888950 + MER92C LTR ERV1 1 110 -444 239 246 15 0 chr4 134399850 134399915 -49888747 + MER92C LTR ERV1 487 552 -2 278 313 25 37 chr4 134399942 134400105 -49888557 - L1ME3A LINE L1 -1095 5051 4891 1509 216 17 0 chr4 134400109 134400401 -49888261 + AluJo SINE Alu 3 299 -13 230 176 20 0 chr4 134401249 134401300 -49887362 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 559 291 86 33 chr4 134401322 134401683 -49886979 - L1ME3A LINE L1 -2188 3958 3579 2043 189 162 68 chr4 134401701 134402456 -49886206 + LTR1B LTR ERV1 1 826 0 429 263 62 36 chr4 134402773 134402967 -49885695 - L1ME3A LINE L1 -2953 3193 2995 433 149 0 0 chr4 134403183 134403257 -49885405 - Alu SINE Alu -1 309 236 243 203 51 0 chr4 134403496 134403575 -49885087 + (TA)n Simple_repeat Simple_repeat 1 83 0 25 31 0 0 chr4 134404323 134404355 -49884307 + AT_rich Low_complexity Low_complexity 1 32 0 938 306 91 26 chr4 134405344 134405763 -49882899 + L2 LINE L2 2864 3309 -4 186 143 0 0 chr4 134407085 134407120 -49881542 + (GA)n Simple_repeat Simple_repeat 2 36 0 403 314 25 0 chr4 134407244 134407362 -49881300 - L2 LINE L2 -1 3312 3192 218 200 0 0 chr4 134408019 134408069 -49880593 + T-rich Low_complexity Low_complexity 1 50 0 1311 267 97 50 chr4 134408071 134408697 -49879965 - L2 LINE L2 -898 2416 1761 229 254 0 45 chr4 134408985 134409052 -49879610 + MIR SINE MIR 77 140 -122 21 36 0 0 chr4 134410535 134410563 -49878099 + AT_rich Low_complexity Low_complexity 1 28 0 436 300 31 31 chr4 134411993 134412153 -49876509 + MER5B DNA MER1_type 13 172 -6 26 50 0 0 chr4 134412414 134412454 -49876208 + AT_rich Low_complexity Low_complexity 1 40 0 26 50 0 0 chr4 134412745 134412785 -49875877 + AT_rich Low_complexity Low_complexity 1 40 0 1711 195 42 13 chr4 134412923 134413302 -49875360 - MLT1B LTR MaLR 0 390 1 246 379 0 10 chr4 134413968 134414071 -49874591 + MER5A DNA MER1_type 3 104 -85 340 316 72 24 chr4 134414222 134414431 -49874231 - L3 LINE CR1 -252 1325 1107 28 29 0 0 chr4 134415181 134415216 -49873446 + AT_rich Low_complexity Low_complexity 1 35 0 220 347 74 0 chr4 134415448 134415569 -49873093 - L2 LINE L2 -584 2730 2601 206 57 57 0 chr4 134416055 134416090 -49872572 + GA-rich Low_complexity Low_complexity 3 39 0 22 0 0 0 chr4 134416650 134416672 -49871990 + AT_rich Low_complexity Low_complexity 1 22 0 231 206 68 55 chr4 134416861 134416934 -49871728 + MIR3 SINE MIR 126 199 -9 22 56 0 0 chr4 134417442 134417478 -49871184 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr4 134417680 134417711 -49870951 + AT_rich Low_complexity Low_complexity 1 31 0 354 296 34 67 chr4 134418588 134418855 -49869807 + L1ME4a LINE L1 5710 5967 -154 24 0 0 0 chr4 134419248 134419272 -49869390 + AT_rich Low_complexity Low_complexity 1 24 0 949 145 28 0 chr4 134419374 134419519 -49869143 - AluSg/x SINE Alu -18 294 146 423 0 0 0 chr4 134420182 134420229 -49868433 + (TG)n Simple_repeat Simple_repeat 2 48 0 1729 159 55 0 chr4 134420248 134420538 -49868124 + MER2 DNA MER2_type 26 331 -14 364 302 0 22 chr4 134420538 134420598 -49868064 + (TA)n Simple_repeat Simple_repeat 1 61 -75 1137 195 27 126 chr4 134420598 134421003 -49867659 - MLT1A1 LTR MaLR 0 365 1 364 302 0 22 chr4 134421003 134421081 -49867581 + (TA)n Simple_repeat Simple_repeat 61 136 0 1747 125 17 31 chr4 134421230 134421517 -49867145 + THE1A LTR MaLR 69 351 -4 596 26 13 0 chr4 134422192 134422270 -49866392 + (TCTA)n Simple_repeat Simple_repeat 1 79 0 226 309 0 21 chr4 134422271 134422365 -49866297 + L1MC4 LINE L1 6614 6705 -1337 4855 128 81 5 chr4 134422442 134423261 -49865401 + Tigger3(Golem) DNA MER2_type 2148 3028 -1 193 407 42 21 chr4 134423310 134423546 -49865116 - L2 LINE L2 -196 3076 2836 292 344 78 23 chr4 134424823 134424951 -49863711 - L2 LINE L2 0 3272 3138 23 92 0 0 chr4 134426292 134426357 -49862305 + AT_rich Low_complexity Low_complexity 1 65 0 226 164 16 16 chr4 134426626 134426687 -49861975 + CT-rich Low_complexity Low_complexity 3 63 0 494 298 116 51 chr4 134426724 134427016 -49861646 + MLT1F1 LTR MaLR 1 311 -284 557 267 18 18 chr4 134427084 134427249 -49861413 + MLT1F1 LTR MaLR 395 559 -8 998 259 53 22 chr4 134427496 134427855 -49860807 + LTR40c LTR ERVL 96 465 0 22 0 0 0 chr4 134428261 134428283 -49860379 + AT_rich Low_complexity Low_complexity 1 22 0 264 322 75 7 chr4 134428790 134428936 -49859726 - MIR3 SINE MIR -15 193 38 24 0 0 0 chr4 134429113 134429137 -49859525 + AT_rich Low_complexity Low_complexity 1 24 0 1281 271 51 73 chr4 134429220 134429950 -49858712 - L1ME3A LINE L1 -34 6070 5357 312 267 140 35 chr4 134430054 134430425 -49858237 - L1ME LINE L1 -4440 1640 1079 370 306 75 58 chr4 134430497 134431040 -49857622 - L1ME LINE L1 -4940 1130 560 29 0 0 0 chr4 134431630 134431659 -49857003 + AT_rich Low_complexity Low_complexity 1 29 0 2914 227 35 5 chr4 134432591 134433225 -49855437 + MER82 DNA MER2_type 1 653 0 24 53 0 0 chr4 134433339 134433377 -49855285 + AT_rich Low_complexity Low_complexity 1 38 0 2076 248 24 43 chr4 134433467 134433776 -49854886 - MER90 LTR ERV1 0 614 322 2254 181 36 2 chr4 134433776 134434218 -49854444 + MER65C LTR ERV1 1 457 -4 2076 248 24 43 chr4 134434218 134434534 -49854128 - MER90 LTR ERV1 -292 322 1 909 42 0 8 chr4 134434934 134435054 -49853608 - L1PA4 LINE L1 0 6155 6037 23 68 0 0 chr4 134435257 134435301 -49853361 + AT_rich Low_complexity Low_complexity 1 44 0 203 133 0 0 chr4 134435491 134435521 -49853141 + (CA)n Simple_repeat Simple_repeat 1 30 0 893 187 18 0 chr4 134436297 134436463 -49852199 + L1PBa LINE L1 33 201 -6662 8658 104 133 14 chr4 134436467 134437915 -49850747 + L1PBa LINE L1 639 2259 -4604 8001 265 19 54 chr4 134438020 134439291 -49849371 + L1PBa LINE L1 2564 3878 -2984 2173 108 10 3 chr4 134439291 134439586 -49849076 + AluSg SINE Alu 1 297 -13 8001 265 19 54 chr4 134439586 134441499 -49847163 + L1PBa LINE L1 3878 5637 -1225 209 145 16 48 chr4 134441617 134441679 -49846983 + (TTATA)n Simple_repeat Simple_repeat 5 64 0 * 385 196 28 34 chr4 134441639 134441818 -49846844 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 * 406 153 80 6 chr4 134441686 134441849 -49846813 + (TA)n Simple_repeat Simple_repeat 2 176 0 2236 105 45 17 chr4 134441867 134442220 -49846442 + L1PB1 LINE L1 5782 6144 -7 237 180 62 23 chr4 134443061 134443189 -49845473 + (TA)n Simple_repeat Simple_repeat 2 134 0 185 288 112 40 chr4 134443792 134443917 -49844745 + L2 LINE L2 2231 2364 -950 2070 123 7 3 chr4 134443948 134444257 -49844405 + AluSp SINE Alu 1 310 -3 456 267 54 65 chr4 134444499 134444776 -49843886 - HAL1b LINE L1 -636 712 439 26 0 0 0 chr4 134446261 134446287 -49842375 + AT_rich Low_complexity Low_complexity 1 26 0 235 276 17 0 chr4 134446300 134446358 -49842304 - MIR SINE MIR -155 107 49 21 36 0 0 chr4 134447054 134447082 -49841580 + AT_rich Low_complexity Low_complexity 1 28 0 474 188 31 0 chr4 134448081 134448177 -49840485 - FLAM_C SINE Alu 0 143 45 1222 205 16 4 chr4 134448490 134448748 -49839914 + L1MA9 LINE L1 6014 6274 -38 35 71 0 0 chr4 134449855 134449925 -49838737 + AT_rich Low_complexity Low_complexity 1 70 0 333 214 55 14 chr4 134451671 134451816 -49836846 + (TA)n Simple_repeat Simple_repeat 1 151 0 308 89 0 0 chr4 134453499 134453544 -49835118 - MADE1 DNA Mariner -1 79 35 23 78 0 0 chr4 134454738 134454789 -49833873 + AT_rich Low_complexity Low_complexity 1 51 0 561 244 83 54 chr4 134454911 134455243 -49833419 - MER52A LTR ERV1 -147 489 202 * 706 283 6 11 chr4 134455218 134455398 -49833264 - LTR28 LTR ERV1 -841 179 1 234 0 0 0 chr4 134456123 134456149 -49832513 + (TG)n Simple_repeat Simple_repeat 2 27 0 915 350 47 22 chr4 134456168 134456571 -49832091 - LTR16C LTR ERVL -14 477 65 1390 206 65 142 chr4 134457618 134458161 -49830501 - MER67D LTR ERV1 -1 513 13 286 364 65 16 chr4 134458210 134458394 -49830268 - ERVL LTR ERVL -1398 4366 4174 2373 75 0 3 chr4 134458484 134458779 -49829883 - AluSx SINE Alu -17 295 2 916 285 56 32 chr4 134459228 134459695 -49828967 + L1ME3A LINE L1 5692 6169 -1 386 232 47 12 chr4 134460370 134460576 -49828086 - L1M LINE L1 -774 5388 5173 707 202 319 0 chr4 134460814 134461027 -49827635 - MST-int LTR MaLR -529 1122 842 442 190 50 0 chr4 134461017 134461117 -49827545 - MSTB1-int LTR MaLR -1475 105 1 * 2208 185 12 14 chr4 134461121 134461543 -49827119 - MSTB1 LTR MaLR -4 428 8 25 0 0 0 chr4 134461754 134461779 -49826883 + AT_rich Low_complexity Low_complexity 1 25 0 927 195 5 45 chr4 134462032 134462253 -49826409 - AluJo SINE Alu 0 312 101 26 30 0 0 chr4 134462555 134462588 -49826074 + AT_rich Low_complexity Low_complexity 1 33 0 1418 167 0 0 chr4 134462624 134462851 -49825811 + AluSx SINE Alu 55 281 -31 198 0 0 0 chr4 134462854 134462876 -49825786 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 33 0 0 0 chr4 134463152 134463185 -49825477 + AT_rich Low_complexity Low_complexity 1 33 0 535 309 61 0 chr4 134463459 134463640 -49825022 - MER20B DNA MER1_type -329 454 263 216 0 0 0 chr4 134463809 134463833 -49824829 + (CA)n Simple_repeat Simple_repeat 1 24 0 223 255 277 0 chr4 134463872 134463966 -49824696 + L2 LINE L2 3194 3313 0 245 316 79 16 chr4 134465340 134465576 -49823086 - L1M4 LINE L1 -3021 3125 2872 473 344 67 29 chr4 134465677 134466262 -49822400 - L1M4 LINE L1 -3391 2755 2149 524 333 45 26 chr4 134466791 134467100 -49821562 - HAL1b LINE L1 -732 616 302 2753 165 23 6 chr4 134467151 134467624 -49821038 - Tigger3b DNA MER2_type -2 1229 749 3789 226 69 128 chr4 134467628 134468999 -49819663 + L1PB3 LINE L1 5 1456 -6109 932 209 65 0 chr4 134468999 134469200 -49819462 + AluJo SINE Alu 9 222 -90 3789 226 69 128 chr4 134469200 134470647 -49818015 + L1PB3 LINE L1 1456 3569 -3996 * 11837 208 25 9 chr4 134470639 134472378 -49816284 + L1PB3 LINE L1 3776 5486 -2087 2843 6 0 0 chr4 134472378 134472689 -49815973 + AluYa5 SINE Alu 1 311 0 11837 208 25 9 chr4 134472689 134474685 -49813977 + L1PB3 LINE L1 5486 7573 0 224 234 31 0 chr4 134474685 134474749 -49813913 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 1875 146 3 6 chr4 134475471 134475787 -49812875 + L1MC1 LINE L1 6013 6327 -6 9362 215 25 23 chr4 134475793 134478237 -49810425 + L1MEc LINE L1 2198 4617 -1598 4797 140 9 67 chr4 134478261 134478789 -49809873 - L1PA15 LINE L1 0 6165 5608 2478 170 12 2 chr4 134478789 134479213 -49809449 - MSTA LTR MaLR 0 428 1 4797 140 9 67 chr4 134479213 134479543 -49809119 - L1PA15 LINE L1 -557 5608 5368 1908 139 0 0 chr4 134479543 134479810 -49808852 - AluSg SINE Alu -43 267 1 4797 140 9 67 chr4 134479810 134479945 -49808717 - L1PA15 LINE L1 -797 5368 5227 * 5281 185 22 36 chr4 134479941 134482253 -49806409 + L1MA4 LINE L1 4014 6290 -10 3106 146 71 60 chr4 134482276 134483021 -49805641 - Tigger3b DNA MER2_type -478 753 1 197 164 0 36 chr4 134483023 134483078 -49805584 + (TATG)n Simple_repeat Simple_repeat 4 56 0 22 0 0 0 chr4 134483789 134483811 -49804851 + AT_rich Low_complexity Low_complexity 1 22 0 2090 119 0 7 chr4 134483811 134483822 -49804840 - AluSx SINE Alu -19 293 283 318 50 0 0 chr4 134483822 134483862 -49804800 + (TTAA)n Simple_repeat Simple_repeat 3 42 0 2090 119 0 7 chr4 134483862 134484143 -49804519 - AluSx SINE Alu -29 283 3 478 187 122 0 chr4 134484765 134484872 -49803790 + FLAM_C SINE Alu 1 120 -23 246 62 0 0 chr4 134484872 134484904 -49803758 + (TAA)n Simple_repeat Simple_repeat 2 33 0 530 311 41 27 chr4 134484945 134485311 -49803351 + L1PA12 LINE L1 7 377 -7204 2074 119 23 0 chr4 134485568 134485870 -49802792 - AluSc SINE Alu 0 309 1 12612 234 22 18 chr4 134486686 134490405 -49798257 + L1PA12 LINE L1 2319 6074 -1510 5593 115 2 32 chr4 134490425 134492045 -49796617 + L1PA15 LINE L1 4564 6156 -9 890 253 61 67 chr4 134492124 134492307 -49796355 + L1M4 LINE L1 4415 4598 -1548 240 35 0 0 chr4 134492307 134492336 -49796326 + (TG)n Simple_repeat Simple_repeat 2 30 0 890 253 61 67 chr4 134492336 134492761 -49795901 + L1M4 LINE L1 4598 5019 -1127 2453 202 147 18 chr4 134492806 134493481 -49795181 - L1MC4 LINE L1 -753 5811 5657 13306 57 1 3 chr4 134493621 134495995 -49792667 + L1PA5 LINE L1 3678 6047 -107 3614 230 66 67 chr4 134495991 134498761 -49789901 - L1MC4 LINE L1 -3671 2893 6 * 384 281 87 45 chr4 134498818 134499066 -49789596 - L1M4 LINE L1 -2981 3165 2929 1816 153 0 0 chr4 134499066 134499348 -49789314 - AluSx SINE Alu -30 282 1 384 281 87 45 chr4 134499348 134499671 -49788991 - L1M4 LINE L1 -3217 2929 2570 2067 219 16 60 chr4 134499677 134500251 -49788411 + L1MB7 LINE L1 2576 3117 -3029 207 0 0 0 chr4 134500251 134500274 -49788388 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2067 219 16 60 chr4 134500274 134500387 -49788275 + L1MB7 LINE L1 3117 3233 -2913 2263 199 26 32 chr4 134500416 134500944 -49787718 + L1MB7 LINE L1 5644 6168 -16 929 335 33 9 chr4 134500948 134501407 -49787255 + L1ME3A LINE L1 5679 6148 -22 35 0 0 0 chr4 134501775 134501810 -49786852 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr4 134502220 134502248 -49786414 + AT_rich Low_complexity Low_complexity 1 28 0 272 364 41 0 chr4 134502854 134502975 -49785687 + MLT1K LTR MaLR 147 272 -316 366 405 14 5 chr4 134503129 134503344 -49785318 - L2 LINE L2 -383 2931 2715 24 32 0 0 chr4 134503365 134503396 -49785266 + AT_rich Low_complexity Low_complexity 1 31 0 41 48 0 0 chr4 134504344 134504406 -49784256 + AT_rich Low_complexity Low_complexity 1 62 0 187 189 0 94 chr4 134505251 134505304 -49783358 + L3 LINE CR1 389 436 -1141 413 316 70 44 chr4 134505965 134506420 -49782242 + L1ME LINE L1 5256 5722 -399 204 229 31 42 chr4 134510043 134510139 -49778523 + (CGGG)n Simple_repeat Simple_repeat 2 96 0 309 356 72 10 chr4 134510373 134510567 -49778095 + L2 LINE L2 2689 2894 -420 247 338 83 15 chr4 134510798 134510931 -49777731 + MIR SINE MIR 91 232 -30 439 200 42 0 chr4 134511690 134511785 -49776877 - MER5A DNA MER1_type -77 112 14 2088 161 46 55 chr4 134511982 134512441 -49776221 + MER34B LTR ERV1 1 455 -110 1323 211 3 49 chr4 134512548 134512875 -49775787 - AluJb SINE Alu 0 312 1 183 42 0 0 chr4 134513126 134513150 -49775512 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 1736 114 0 114 chr4 134513910 134514268 -49774394 + L1MA4 LINE L1 5655 5971 -329 205 192 0 19 chr4 134514777 134514829 -49773833 + T-rich Low_complexity Low_complexity 5 55 0 925 323 36 83 chr4 134514968 134515519 -49773143 + HERVL40 LTR ERVL 984 1508 -4022 516 286 109 10 chr4 134515582 134515774 -49772888 + HERVL40 LTR ERVL 3270 3480 -2050 1068 296 54 24 chr4 134515778 134516150 -49772512 + HERVL40 LTR ERVL 3584 3966 -1564 44108 38 1 2 chr4 134516171 134522324 -49766338 + L1PA3 LINE L1 5 6152 -3 23 0 0 0 chr4 134522324 134522347 -49766315 + AT_rich Low_complexity Low_complexity 1 23 0 328 265 172 20 chr4 134522362 134522513 -49766149 + HERVL40 LTR ERVL 1787 1960 -1077 271 275 11 11 chr4 134522486 134522577 -49766085 + HERVL40 LTR ERVL 4125 4215 -1315 * 898 249 61 59 chr4 134523522 134523878 -49764784 + HERVL40 LTR ERVL 2780 5530 0 1588 239 51 27 chr4 134523881 134524329 -49764333 + LTR40b LTR ERVL 4 462 0 21 0 0 0 chr4 134525772 134525793 -49762869 + AT_rich Low_complexity Low_complexity 1 21 0 619 273 130 14 chr4 134527168 134527384 -49761278 - MIR SINE MIR -1 261 21 489 34 0 0 chr4 134527456 134527515 -49761147 + (TTTTA)n Simple_repeat Simple_repeat 2 60 0 1340 227 14 14 chr4 134527574 134527852 -49760810 - AluJo SINE Alu -34 278 1 232 363 204 6 chr4 134529073 134529431 -49759231 + L3 LINE CR1 1137 1565 -12 181 328 61 69 chr4 134530148 134530279 -49758383 - L2 LINE L2 -40 3273 3144 351 281 16 33 chr4 134531295 134531416 -49757246 + MIR SINE MIR 48 166 -96 195 175 0 0 chr4 134531431 134531488 -49757174 + (TA)n Simple_repeat Simple_repeat 1 57 0 243 0 0 0 chr4 134531519 134531546 -49757116 + (CA)n Simple_repeat Simple_repeat 2 28 0 285 227 32 0 chr4 134531595 134531670 -49756992 - MIR SINE MIR -66 142 72 202 203 34 17 chr4 134531670 134531729 -49756933 + (CATATA)n Simple_repeat Simple_repeat 6 65 0 218 352 49 49 chr4 134532447 134532711 -49755951 + L2 LINE L2 1758 2021 -1293 240 318 109 0 chr4 134532992 134533102 -49755560 - MLT1I LTR MaLR -275 134 13 254 321 106 23 chr4 134533259 134533926 -49754736 + L1MC4 LINE L1 7099 7787 -255 5331 134 8 19 chr4 134533926 134535805 -49752857 + L1PA16 LINE L1 4280 6164 -2 254 321 106 23 chr4 134535805 134535943 -49752719 + L1MC4 LINE L1 7787 7912 -130 2754 10 0 0 chr4 134536367 134536672 -49751990 + AluYa5 SINE Alu 1 305 -6 23 33 0 0 chr4 134536759 134536789 -49751873 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 134536885 134536906 -49751756 + AT_rich Low_complexity Low_complexity 1 21 0 8388 213 8 7 chr4 134537312 134537744 -49750918 - L1 LINE L1 -1009 5137 4707 1591 85 33 0 chr4 134537744 134537835 -49750827 - AluY SINE Alu -93 218 131 186 43 0 0 chr4 134537835 134537858 -49750804 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1591 85 33 0 chr4 134537858 134537977 -49750685 - AluY SINE Alu -180 131 1 8388 213 8 7 chr4 134537977 134539431 -49749231 - L1 LINE L1 -1439 4707 3248 23 0 0 0 chr4 134541540 134541563 -49747099 + AT_rich Low_complexity Low_complexity 1 23 0 1680 101 0 21 chr4 134541891 134542128 -49746534 - AluSq SINE Alu -14 299 68 21 71 0 0 chr4 134542237 134542279 -49746383 + AT_rich Low_complexity Low_complexity 1 42 0 321 284 37 12 chr4 134542327 134542408 -49746254 - LTR50 LTR ERVL -338 457 375 270 293 120 0 chr4 134542479 134542554 -49746108 - LTR50 LTR ERVL -593 202 119 24 0 0 0 chr4 134542886 134542910 -49745752 + AT_rich Low_complexity Low_complexity 1 24 0 31 44 0 0 chr4 134543330 134543375 -49745287 + AT_rich Low_complexity Low_complexity 1 45 0 23 33 0 0 chr4 134543766 134543796 -49744866 + AT_rich Low_complexity Low_complexity 1 30 0 317 270 128 20 chr4 134543859 134544007 -49744655 + HAL1b LINE L1 746 909 -439 831 263 71 35 chr4 134544194 134544533 -49744129 - L1MC4 LINE L1 -427 7615 7265 708 240 45 61 chr4 134544533 134544846 -49743816 + L1MC4 LINE L1 7735 8042 0 2162 119 0 0 chr4 134544950 134545253 -49743409 - AluY SINE Alu -8 303 1 203 286 0 0 chr4 134545300 134545342 -49743320 + MIR SINE MIR 205 246 -16 5858 147 23 7 chr4 134545753 134546105 -49742557 - L1PB1 LINE L1 0 6151 5806 340 54 18 18 chr4 134546105 134546161 -49742501 + (TA)n Simple_repeat Simple_repeat 2 57 0 5858 147 23 7 chr4 134546161 134547383 -49741279 - L1PB1 LINE L1 -345 5806 4553 2287 229 35 7 chr4 134547385 134547987 -49740675 + L1PB1 LINE L1 3934 4552 -1594 925 125 0 15 chr4 134548349 134548514 -49740148 + AluSg/x SINE Alu 159 312 0 343 318 71 8 chr4 134549198 134549324 -49739338 - MIR SINE MIR -126 136 3 469 330 51 23 chr4 134549483 134549698 -49738964 + MIR SINE MIR 6 226 -36 1099 257 90 57 chr4 134549836 134550896 -49737766 + L1MC/D LINE L1 498 1579 -4501 1424 254 134 21 chr4 134550984 134552162 -49736500 + L1MC/D LINE L1 1686 2998 -3082 860 226 55 5 chr4 134552170 134552369 -49736293 - MER58A DNA MER1_type -9 215 7 730 217 115 5 chr4 134552423 134552640 -49736022 + MER52A LTR ERV1 1 241 -1514 * 1869 195 5 52 chr4 134552626 134553068 -49735594 + MER52A LTR ERV1 373 793 -962 226 270 79 0 chr4 134553784 134553847 -49734815 + L2 LINE L2 3205 3272 0 257 350 8 25 chr4 134553945 134554065 -49734597 + L2 LINE L2 3195 3312 -1 22 0 0 0 chr4 134554852 134554874 -49733788 + AT_rich Low_complexity Low_complexity 1 22 0 1438 96 23 9 chr4 134554874 134555094 -49733568 - L1PA3 LINE L1 -3 6152 5930 30 27 0 0 chr4 134555303 134555340 -49733322 + AT_rich Low_complexity Low_complexity 1 37 0 234 284 49 0 chr4 134555716 134555797 -49732865 - MLT1H1 LTR MaLR -32 523 439 234 240 40 0 chr4 134555939 134555989 -49732673 - MLT1G LTR MaLR -302 288 237 2902 218 58 42 chr4 134556026 134556883 -49731779 + L1MD2 LINE L1 5487 6358 -1 21 36 0 0 chr4 134556911 134556939 -49731723 + AT_rich Low_complexity Low_complexity 1 28 0 485 276 152 40 chr4 134556945 134557647 -49731015 + L1MC/D LINE L1 4001 4781 -1299 333 292 67 20 chr4 134557794 134558125 -49730537 + L1MC/D LINE L1 5061 5407 -768 3758 155 66 47 chr4 134558148 134558799 -49729863 - L1MA4 LINE L1 0 7719 7049 243 0 0 0 chr4 134558799 134558826 -49729836 + (TA)n Simple_repeat Simple_repeat 1 27 0 3758 155 66 47 chr4 134558826 134558961 -49729701 - L1MA4 LINE L1 -670 7049 6918 3153 203 62 8 chr4 134559031 134559799 -49728863 - L1MA4 LINE L1 -1828 5737 4928 211 153 59 24 chr4 134559808 134559893 -49728769 + (TTATA)n Simple_repeat Simple_repeat 4 91 0 * 215 171 57 0 chr4 134559845 134559915 -49728747 + (TATAA)n Simple_repeat Simple_repeat 1 74 0 224 136 34 0 chr4 134559917 134559976 -49728686 + (TTATA)n Simple_repeat Simple_repeat 1 61 0 4678 246 36 45 chr4 134559977 134561930 -49726732 - L1MA4 LINE L1 -2632 4933 2964 2318 156 8 3 chr4 134561930 134562315 -49726347 - L1PA16 LINE L1 -9 6157 5771 4678 246 36 45 chr4 134562315 134562433 -49726229 - L1MA4 LINE L1 -4601 2964 2846 204 40 0 0 chr4 134562433 134562458 -49726204 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4678 246 36 45 chr4 134562458 134563369 -49725293 - L1MA4 LINE L1 -4719 2846 2266 512 332 33 91 chr4 134563732 134564020 -49724642 - L1MA4 LINE L1 -5772 1724 1480 1630 172 24 14 chr4 134564020 134564310 -49724352 - AluSx SINE Alu -19 293 1 512 332 33 91 chr4 134564310 134564560 -49724102 - L1MA4 LINE L1 -6016 1480 1217 26 50 0 0 chr4 134565689 134565729 -49722933 + AT_rich Low_complexity Low_complexity 1 40 0 297 0 0 0 chr4 134566093 134566126 -49722536 + (TG)n Simple_repeat Simple_repeat 2 34 0 408 55 0 0 chr4 134566817 134566872 -49721790 + (TG)n Simple_repeat Simple_repeat 2 56 0 280 240 60 30 chr4 134567213 134567313 -49721349 - MIR SINE MIR -73 189 87 2251 162 3 3 chr4 134567427 134567791 -49720871 - THE1B LTR MaLR 0 364 1 9059 145 33 24 chr4 134567791 134569357 -49719305 - THE1B-int LTR MaLR 0 1580 1 2285 141 14 6 chr4 134569357 134569718 -49718944 - THE1B LTR MaLR 0 364 1 25 31 0 0 chr4 134570526 134570558 -49718104 + AT_rich Low_complexity Low_complexity 1 32 0 21 82 0 0 chr4 134573708 134573757 -49714905 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr4 134573845 134573867 -49714795 + AT_rich Low_complexity Low_complexity 1 22 0 489 237 185 5 chr4 134574225 134574436 -49714226 + L1MD3 LINE L1 7745 7993 -2 1092 207 23 0 chr4 134574592 134574809 -49713853 + AluJo SINE Alu 1 222 -90 2535 181 103 5 chr4 134575055 134575618 -49713044 - L1MB3 LINE L1 -7 6176 5559 336 308 161 49 chr4 134575699 134576294 -49712368 - L2 LINE L2 -337 2977 2316 192 77 0 0 chr4 134576425 134576451 -49712211 + (T)n Simple_repeat Simple_repeat 1 26 0 231 188 0 0 chr4 134577386 134577434 -49711228 + GA-rich Low_complexity Low_complexity 3 50 0 338 258 42 66 chr4 134577469 134577636 -49711026 - L1ME4a LINE L1 -2 6119 5957 553 305 42 17 chr4 134578172 134578408 -49710254 + MIR SINE MIR 9 250 -12 2088 122 0 0 chr4 134578655 134578958 -49709704 - AluSx SINE Alu -9 303 1 1044 90 0 0 chr4 134578962 134579095 -49709567 - AluSq/x SINE Alu -179 133 1 12628 153 64 16 chr4 134579095 134579161 -49709501 + Tigger1 DNA MER2_type 45 106 -2312 2313 94 0 3 chr4 134579161 134579460 -49709202 - AluSg SINE Alu -12 298 1 12628 153 64 16 chr4 134579460 134581658 -49707004 + Tigger1 DNA MER2_type 106 2417 -1 186 374 46 30 chr4 134581810 134581941 -49706721 + MIR SINE MIR 19 151 -57 462 350 45 0 chr4 134582467 134582667 -49705995 - MIR SINE MIR -2 260 52 15538 159 23 12 chr4 134584209 134586887 -49701775 - Tigger2 DNA MER2_type 0 2718 10 188 338 125 0 chr4 134589384 134589464 -49699198 + L2 LINE L2 3200 3289 -24 21 57 0 0 chr4 134590018 134590053 -49698609 + AT_rich Low_complexity Low_complexity 1 35 0 353 22 22 0 chr4 134590595 134590641 -49698021 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 30 59 0 0 chr4 134590749 134590800 -49697862 + AT_rich Low_complexity Low_complexity 1 51 0 240 296 101 50 chr4 134641467 134641626 -49647036 - MIR SINE MIR -29 233 67 238 296 58 93 chr4 134642560 134642660 -49646002 - MIR SINE MIR -2 260 167 1709 169 10 13 chr4 134642660 134642968 -49645694 - AluJb SINE Alu 0 312 6 238 296 58 93 chr4 134642968 134643039 -49645623 - MIR SINE MIR -95 167 95 186 311 49 49 chr4 134643288 134643410 -49645252 - MIR SINE MIR -107 155 34 2799 195 60 25 chr4 134644245 134644881 -49643781 + L1MD1 LINE L1 5532 6189 -53 1013 209 50 28 chr4 134644872 134645155 -49643507 - L1MA4A LINE L1 -1 6302 6014 * 12180 193 41 26 chr4 134645285 134645858 -49642804 - L1MEc LINE L1 -235 6068 5505 2271 119 0 0 chr4 134645858 134646168 -49642494 - AluSx SINE Alu -2 310 1 12180 193 41 26 chr4 134646168 134648013 -49640649 - L1MEc LINE L1 -798 5505 3598 7472 33 0 0 chr4 134648013 134649240 -49639422 - L1PA4 LINE L1 -1 6154 4930 12180 193 41 26 chr4 134649240 134650609 -49638053 - L1MEc LINE L1 -2705 3598 2251 1984 296 98 3 chr4 134650935 134651608 -49637054 - L1M2b LINE L1 -6472 737 1 351 118 15 0 chr4 134651631 134651699 -49636963 + L1MD1 LINE L1 6173 6241 -1 262 324 70 42 chr4 134651845 134651987 -49636675 - MLT1K LTR MaLR -367 221 76 201 108 0 0 chr4 134652220 134652257 -49636405 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 196 383 106 30 chr4 134652621 134653026 -49635636 - L2 LINE L2 -481 2833 2398 275 236 0 0 chr4 134653407 134653462 -49635200 - L2 LINE L2 -3 3310 3256 387 141 0 94 chr4 134654501 134654586 -49634076 + MSTD LTR MaLR 1 77 -319 651 208 65 0 chr4 134654609 134654763 -49633899 + MSTD LTR MaLR 233 396 0 774 177 30 89 chr4 134654765 134654793 -49633869 + MSTD-int LTR MaLR 2 30 -1705 2701 110 91 2 chr4 134654793 134655220 -49633442 - MER4C LTR ERV1 0 465 1 774 177 30 89 chr4 134655220 134655394 -49633268 + MSTD-int LTR MaLR 30 192 -1543 189 107 0 0 chr4 134655429 134655457 -49633205 + (TTA)n Simple_repeat Simple_repeat 3 30 0 341 344 79 53 chr4 134655918 134656273 -49632389 - ERVL LTR ERVL -3507 2257 1894 571 341 117 6 chr4 134656455 134656604 -49632058 - L2 LINE L2 -282 3031 2900 216 0 0 0 chr4 134656604 134656628 -49632034 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 571 341 117 6 chr4 134656628 134656862 -49631800 - L2 LINE L2 -413 2900 2608 1185 171 116 55 chr4 134657381 134657674 -49630988 + MER7A DNA MER2_type 1 309 -37 2904 44 0 0 chr4 134657675 134658036 -49630626 - L1PA5 LINE L1 0 6154 5794 1863 259 20 46 chr4 134658153 134658766 -49629896 + L1ME2 LINE L1 5554 6150 -14 897 170 90 5 chr4 134658922 134659122 -49629540 + MER33 DNA MER1_type 5 221 -103 614 162 34 0 chr4 134659223 134659340 -49629322 - L1PB4 LINE L1 -2 6856 6736 210 158 31 79 chr4 134659342 134659469 -49629193 + (TATAA)n Simple_repeat Simple_repeat 2 122 0 10484 207 51 9 chr4 134659493 134662869 -49625793 - L1PB4 LINE L1 -122 6736 3225 706 299 77 19 chr4 134662865 134663189 -49625473 - L1PB4 LINE L1 -5171 1678 1336 * 2325 82 7 3 chr4 134663200 134663506 -49625156 - AluSc SINE Alu -2 307 1 764 267 5 0 chr4 134663506 134663701 -49624961 - L1PA15-16 LINE L1 -5306 897 702 380 321 34 29 chr4 134663717 134663926 -49624736 - L1PA15-16 LINE L1 -5642 562 353 225 365 25 25 chr4 134664042 134664316 -49624346 - L1PA15-16 LINE L1 -5844 360 87 289 348 113 52 chr4 134664535 134665030 -49623632 - L1PB4 LINE L1 -6315 534 10 343 275 9 9 chr4 134665269 134665378 -49623284 + MER103 DNA DNA 13 121 -45 2389 84 0 0 chr4 134666044 134666355 -49622307 + AluY SINE Alu 1 311 0 313 87 0 0 chr4 134668532 134668578 -49620084 - MADE1 DNA Mariner 0 80 35 2311 97 0 0 chr4 134669526 134669835 -49618827 - AluY SINE Alu -2 309 1 21 0 0 0 chr4 134671165 134671186 -49617476 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chr4 134671721 134671751 -49616911 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 134672265 134672287 -49616375 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 134673540 134673562 -49615100 + AT_rich Low_complexity Low_complexity 1 22 0 202 232 18 18 chr4 134673797 134673853 -49614809 + (TG)n Simple_repeat Simple_repeat 2 57 0 245 217 0 0 chr4 134674221 134674267 -49614395 + Tigger3(Golem) DNA MER2_type 2979 3024 -5 9369 140 41 20 chr4 134675698 134678001 -49610661 + L1PA10 LINE L1 3843 6167 -1 240 152 0 0 chr4 134678201 134678247 -49610415 + L1ME3 LINE L1 1413 1458 -4965 451 297 132 41 chr4 134678443 134678460 -49610202 + L1ME3 LINE L1 1863 1877 -5064 1826 161 3 23 chr4 134678460 134678764 -49609898 + AluJo SINE Alu 1 298 -14 451 297 132 41 chr4 134678764 134679363 -49609299 + L1ME3 LINE L1 1877 2482 -4459 328 271 135 26 chr4 134679494 134679686 -49608976 + L1ME3 LINE L1 2651 2863 -4078 487 248 34 84 chr4 134679748 134680071 -49608591 + L1ME3 LINE L1 2926 3232 -3709 688 211 6 44 chr4 134680091 134680271 -49608391 - AluJo SINE Alu -22 290 118 785 229 17 6 chr4 134680430 134680609 -49608053 + MER58 DNA MER1_type 3 183 -2237 265 309 89 16 chr4 134680609 134680800 -49607862 + L1ME3 LINE L1 5506 5710 -1231 1905 104 7 0 chr4 134680852 134681122 -49607540 + AluSg SINE Alu 38 309 -1 431 280 84 61 chr4 134681127 134681158 -49607504 + L1ME3 LINE L1 5807 5836 -1105 547 300 22 45 chr4 134681158 134681381 -49607281 - MER20 DNA MER1_type -1 218 1 431 280 84 61 chr4 134681381 134681645 -49607017 + L1ME3 LINE L1 5836 6109 -832 1137 252 87 56 chr4 134681684 134682203 -49606459 + L1ME3 LINE L1 6144 6678 -279 290 313 10 10 chr4 134682223 134682322 -49606340 + LTR28 LTR ERV1 81 179 -841 540 240 60 66 chr4 134682358 134682651 -49606011 + MER52A LTR ERV1 545 1297 -44 24 32 0 0 chr4 134682749 134682780 -49605882 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr4 134683103 134683138 -49605524 + AT_rich Low_complexity Low_complexity 1 35 0 321 310 67 69 chr4 134683304 134683855 -49604807 - HAL1 LINE L1 -824 1683 1134 1984 151 0 3 chr4 134684501 134684805 -49603857 + AluSx SINE Alu 1 303 -9 1102 97 11 0 chr4 134685155 134685330 -49603332 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 456 174 0 26 chr4 134685341 134685456 -49603206 + CT-rich Low_complexity Low_complexity 3 114 0 1409 312 40 18 chr4 134685523 134686148 -49602514 + HsTC2c DNA Tc2 88 726 -3 208 325 129 25 chr4 134686865 134687028 -49601634 + MIR SINE MIR 28 207 -55 293 343 133 0 chr4 134687120 134687286 -49601376 - L2 LINE L2 -432 2882 2695 934 261 60 30 chr4 134688540 134689008 -49599654 - L1MEc LINE L1 -1515 4700 4219 1378 268 140 26 chr4 134689168 134689697 -49598965 + MLT1E LTR MaLR 1 589 -4 362 277 15 0 chr4 134689756 134689886 -49598776 - L1MEc LINE L1 -2535 3680 3549 1721 269 93 39 chr4 134689906 134691317 -49597345 - L1MEc LINE L1 -2847 3368 1919 424 275 40 52 chr4 134691423 134691578 -49597084 - L1MEc LINE L1 -5096 1300 1145 1168 232 83 43 chr4 134691578 134691953 -49596709 + MLT1B LTR MaLR 1 390 0 424 275 40 52 chr4 134691953 134692121 -49596541 - L1MEc LINE L1 -5251 1145 981 772 262 30 23 chr4 134692141 134692628 -49596034 + MLT2F LTR ERVL 1 604 -59 542 339 87 31 chr4 134692709 134693540 -49595122 - L1MEc LINE L1 -5462 934 58 21 36 0 0 chr4 134695319 134695347 -49593315 + AT_rich Low_complexity Low_complexity 1 28 0 200 114 0 29 chr4 134695420 134695455 -49593207 + (TAGA)n Simple_repeat Simple_repeat 3 36 0 240 354 95 0 chr4 134695736 134695883 -49592779 + MIR SINE MIR 2 162 -100 2196 143 8 16 chr4 134695884 134696261 -49592401 - THE1C LTR MaLR -1 374 1 9095 149 36 28 chr4 134696261 134697775 -49590887 - THE1C-int LTR MaLR 0 1580 50 1958 150 0 0 chr4 134697775 134698062 -49590600 - AluSx SINE Alu -25 287 1 9095 149 36 28 chr4 134698062 134698110 -49590552 - THE1C-int LTR MaLR -1530 50 4 2119 142 21 19 chr4 134698113 134698487 -49590175 - THE1C LTR MaLR 0 375 1 691 260 7 7 chr4 134698575 134698729 -49589933 + MER5A DNA MER1_type 36 189 0 453 154 27 9 chr4 134699098 134699208 -49589454 + CT-rich Low_complexity Low_complexity 2 113 0 770 295 60 0 chr4 134699890 134700107 -49588555 - MIR SINE MIR -28 234 5 246 278 7 46 chr4 134700566 134700717 -49587945 + T-rich Low_complexity Low_complexity 2 146 0 396 0 0 0 chr4 134700814 134700858 -49587804 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 1454 215 33 36 chr4 134701789 134702152 -49586510 + MLT1A1 LTR MaLR 4 365 0 195 129 0 0 chr4 134702610 134702641 -49586021 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 6643 65 13 0 chr4 134702929 134703903 -49584759 - L1PA7 LINE L1 0 6154 5165 207 0 0 0 chr4 134705123 134705146 -49583516 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1886 146 0 7 chr4 134705946 134706233 -49582429 + AluSx SINE Alu 1 285 -27 29 60 0 0 chr4 134706234 134706284 -49582378 + AT_rich Low_complexity Low_complexity 1 50 0 1393 210 52 9 chr4 134706378 134706702 -49581960 + MER58B DNA MER1_type 4 341 0 271 332 98 16 chr4 134706998 134707191 -49581471 - MIR SINE MIR -24 238 30 292 297 20 10 chr4 134709196 134709297 -49579365 - L2 LINE L2 -1903 1411 1310 22 0 0 0 chr4 134709584 134709606 -49579056 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr4 134709887 134709922 -49578740 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr4 134710109 134710131 -49578531 + AT_rich Low_complexity Low_complexity 1 22 0 378 357 28 9 chr4 134710247 134710460 -49578202 + LTR16C LTR ERVL 275 491 0 239 45 0 106 chr4 134710677 134710743 -49577919 + (TTTTA)n Simple_repeat Simple_repeat 2 60 0 267 173 0 0 chr4 134711362 134711414 -49577248 + (CATATA)n Simple_repeat Simple_repeat 1 52 0 1401 213 92 44 chr4 134711744 134712186 -49576476 - MLT1C LTR MaLR 0 467 1 959 277 65 92 chr4 134712186 134712725 -49575937 - MLT1F1 LTR MaLR -18 549 1 31 0 0 0 chr4 134713010 134713041 -49575621 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr4 134713364 134713387 -49575275 + AT_rich Low_complexity Low_complexity 1 23 0 1192 272 73 29 chr4 134713782 134714341 -49574321 + L1ME LINE L1 4650 5233 -913 27124 90 8 6 chr4 134714351 134720485 -49568177 + L1PA6 LINE L1 11 6149 -5 418 216 154 19 chr4 134720535 134720697 -49567965 + L1ME LINE L1 5304 5487 -675 2370 323 81 47 chr4 134720823 134722400 -49566262 - L2 LINE L2 -169 3144 1511 243 289 116 25 chr4 134722411 134722532 -49566130 - L2 LINE L2 0 3313 3182 21 57 0 0 chr4 134722540 134722575 -49566087 + AT_rich Low_complexity Low_complexity 1 35 0 361 281 60 48 chr4 134723153 134723320 -49565342 - MER69A DNA AcHobo 0 177 9 679 232 16 11 chr4 134723423 134723608 -49565054 + L1MA9 LINE L1 6127 6312 0 23 33 0 0 chr4 134723779 134723809 -49564853 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 134724003 134724024 -49564638 + AT_rich Low_complexity Low_complexity 1 21 0 214 265 0 0 chr4 134724345 134724394 -49564268 + (TG)n Simple_repeat Simple_repeat 1 49 0 1037 319 51 16 chr4 134726649 134727101 -49561561 + L2 LINE L2 1809 2276 -1038 326 254 231 30 chr4 134727205 134727374 -49561288 + L2 LINE L2 3111 3313 0 402 21 0 0 chr4 134728067 134728114 -49560548 + (TG)n Simple_repeat Simple_repeat 1 47 0 653 309 104 51 chr4 134728202 134728597 -49560065 + LTR16C LTR ERVL 9 424 -67 788 236 11 0 chr4 134728600 134728778 -49559884 - MLT1D LTR MaLR -3 502 323 761 267 5 25 chr4 134728780 134728982 -49559680 - MLT1D LTR MaLR -307 198 1 28 61 0 0 chr4 134729390 134729439 -49559223 + AT_rich Low_complexity Low_complexity 1 49 0 194 312 40 70 chr4 134729623 134729822 -49558840 - L2 LINE L2 -310 3003 2811 216 352 164 26 chr4 134730115 134730462 -49558200 - L2 LINE L2 -899 2415 2021 183 275 38 12 chr4 134730985 134731065 -49557597 - L2 LINE L2 -1040 2274 2193 * 1153 304 76 3 chr4 134731049 134731485 -49557177 - L2 LINE L2 -305 3008 2527 1300 281 36 49 chr4 134731486 134731980 -49556682 - L2 LINE L2 -1966 1348 861 1358 226 26 29 chr4 134732702 134733047 -49555615 + MLT1A1 LTR MaLR 11 354 -11 2277 118 30 28 chr4 134733632 134733995 -49554667 - THE1B LTR MaLR 0 364 1 370 314 93 16 chr4 134736218 134736476 -49552186 + L1ME4a LINE L1 5617 5894 -227 3394 225 61 2 chr4 134736843 134737714 -49550948 + L1MB7 LINE L1 4335 5256 -890 1655 224 33 3 chr4 134737715 134738107 -49550555 + L1MB7 LINE L1 5565 5968 -216 8359 206 42 7 chr4 134738488 134741488 -49547174 + L1PA16 LINE L1 3055 6157 -9 21 0 0 0 chr4 134741937 134741958 -49546704 + AT_rich Low_complexity Low_complexity 1 21 0 2635 201 17 14 chr4 134742307 134742825 -49545837 + Tigger1 DNA MER2_type 15 534 -1884 259 225 113 0 chr4 134742825 134742896 -49545766 - L1 LINE L1 -1458 4752 4674 5385 116 23 29 chr4 134742896 134744348 -49544314 + L1PA15 LINE L1 4727 6165 0 1742 286 75 33 chr4 134744364 134744803 -49543859 - L1 LINE L1 -4327 1884 1465 243 0 0 0 chr4 134744803 134744830 -49543832 + (TTAA)n Simple_repeat Simple_repeat 2 28 0 2054 110 3 3 chr4 134744830 134745112 -49543550 - AluSg SINE Alu -26 284 3 1742 286 75 33 chr4 134745112 134745991 -49542671 - L1 LINE L1 -4745 1466 518 731 313 21 42 chr4 134746323 134746607 -49542055 - L1 LINE L1 -5719 422 145 290 190 0 17 chr4 134746726 134746784 -49541878 - L1 LINE L1 -6084 57 1 21 57 0 0 chr4 134748494 134748529 -49540133 + AT_rich Low_complexity Low_complexity 1 35 0 1020 239 62 59 chr4 134748614 134749003 -49539659 + MLT1B LTR MaLR 1 390 0 26 82 0 0 chr4 134749105 134749166 -49539496 + AT_rich Low_complexity Low_complexity 1 61 0 781 262 102 42 chr4 134749368 134749700 -49538962 - MLT1C LTR MaLR 0 467 116 61 45 0 0 chr4 134751753 134751842 -49536820 + AT_rich Low_complexity Low_complexity 1 89 0 411 148 74 49 chr4 134752914 134753036 -49535626 + LTR19A LTR ERV1 345 469 -17 1634 205 118 38 chr4 134753399 134753847 -49534815 + MLT1D LTR MaLR 17 500 -5 234 242 17 8 chr4 134753848 134753968 -49534694 + (TA)n Simple_repeat Simple_repeat 1 121 0 3799 155 123 9 chr4 134754002 134754744 -49533918 - LTR1B LTR ERV1 0 826 1 495 220 25 7 chr4 134754793 134755077 -49533585 + (TA)n Simple_repeat Simple_repeat 1 289 0 246 200 0 0 chr4 134755077 134755127 -49533535 + L1MCa LINE L1 2015 2064 -4362 209 196 18 0 chr4 134755127 134755183 -49533479 + (TA)n Simple_repeat Simple_repeat 1 57 0 275 142 28 38 chr4 134755233 134755339 -49533323 + (TA)n Simple_repeat Simple_repeat 2 106 0 236 247 0 14 chr4 134755345 134755418 -49533244 - L1MC4 LINE L1 -1347 6695 6624 * 256 236 0 14 chr4 134755354 134755426 -49533236 + L1MC4 LINE L1 6615 6685 -1357 30 0 0 0 chr4 134755937 134755967 -49532695 + AT_rich Low_complexity Low_complexity 1 30 0 554 344 65 21 chr4 134756263 134756554 -49532108 + L2 LINE L2 2960 3263 -50 1433 219 117 145 chr4 134757002 134757453 -49531209 - LTR1B LTR ERV1 0 1020 558 2049 143 0 7 chr4 134757453 134757754 -49530908 - AluSx SINE Alu -11 301 3 1433 219 117 145 chr4 134757754 134758265 -49530397 - LTR1B LTR ERV1 -462 558 1 312 351 73 6 chr4 134759193 134759358 -49529304 + MIR3 SINE MIR 18 193 -15 1820 147 35 0 chr4 134759800 134760086 -49528576 + AluSx SINE Alu 1 296 -16 186 103 0 0 chr4 134760241 134760270 -49528392 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr4 134760657 134760678 -49527984 + AT_rich Low_complexity Low_complexity 1 21 0 2086 241 32 37 chr4 134762181 134762808 -49525854 + MLT1E2 LTR MaLR 1 624 -2 337 327 0 0 chr4 134763029 134763130 -49525532 + MIR SINE MIR 162 262 0 420 331 67 47 chr4 134763703 134764044 -49524618 - MLT1K LTR MaLR -23 565 218 465 329 84 36 chr4 134766192 134766441 -49522221 + MIR SINE MIR 2 262 0 22 35 0 0 chr4 134767482 134767511 -49521151 + AT_rich Low_complexity Low_complexity 1 29 0 5900 204 15 4 chr4 134767821 134769080 -49519582 - L1 LINE L1 -1134 5012 3741 5155 156 29 15 chr4 134769083 134770032 -49518630 + L1PA16 LINE L1 5067 6034 -132 2228 82 3 0 chr4 134770032 134770352 -49518310 + AluY SINE Alu 1 321 0 5155 156 29 15 chr4 134770352 134770483 -49518179 + L1PA16 LINE L1 6034 6162 -4 181 370 33 22 chr4 134771192 134771284 -49517378 - MIR3 SINE MIR -11 197 105 21 36 0 0 chr4 134771884 134771912 -49516750 + AT_rich Low_complexity Low_complexity 1 28 0 241 390 134 12 chr4 134772797 134773199 -49515463 - L2 LINE L2 -27 3286 2836 244 211 0 0 chr4 134773513 134773565 -49515097 - L1MC4 LINE L1 -1339 6703 6652 34 0 0 0 chr4 134773644 134773678 -49514984 + AT_rich Low_complexity Low_complexity 1 34 0 265 339 104 16 chr4 134774701 134774884 -49513778 - L2 LINE L2 -670 2644 2446 307 298 20 80 chr4 134775590 134775641 -49513021 + MIR SINE MIR 2 54 -208 1830 141 5 61 chr4 134775641 134776017 -49512645 - THE1A LTR MaLR 0 355 1 307 298 20 80 chr4 134776017 134776116 -49512546 + MIR SINE MIR 54 143 -119 279 322 59 25 chr4 134776195 134776313 -49512349 + L2 LINE L2 3188 3309 -4 26 30 0 0 chr4 134776594 134776627 -49512035 + AT_rich Low_complexity Low_complexity 1 33 0 2099 163 78 8 chr4 134776789 134777189 -49511473 + MSTA LTR MaLR 1 428 0 549 345 36 18 chr4 134778435 134778658 -49510004 - MIR SINE MIR -31 231 5 1913 150 72 3 chr4 134779211 134779490 -49509172 + MER47A DNA MER2_type 1 259 -2064 261 0 0 0 chr4 134779490 134779519 -49509143 + (TA)n Simple_repeat Simple_repeat 1 29 0 2429 61 0 16 chr4 134779519 134779830 -49508832 - AluY SINE Alu -5 306 1 1913 150 72 3 chr4 134779830 134779883 -49508779 + MER47A DNA MER2_type 258 357 -9 186 128 0 0 chr4 134780900 134780939 -49507723 + (A)n Simple_repeat Simple_repeat 1 39 0 5280 169 39 3 chr4 134781192 134782514 -49506148 - L1PA16 LINE L1 0 6166 4795 462 269 45 51 chr4 134782541 134782697 -49505965 + L2 LINE L2 3158 3312 -1 27 0 0 0 chr4 134782795 134782822 -49505840 + AT_rich Low_complexity Low_complexity 1 27 0 463 287 62 5 chr4 134783116 134783403 -49505259 + LTR16A LTR ERVL 105 446 -4 21 0 0 0 chr4 134783435 134783456 -49505206 + AT_rich Low_complexity Low_complexity 1 21 0 248 314 105 0 chr4 134784024 134784148 -49504514 + MER117 DNA MER1_type 11 147 -50 184 316 13 13 chr4 134785859 134785935 -49502727 + L3b LINE CR1 1213 1288 -295 741 308 33 60 chr4 134785945 134786309 -49502353 + LTR16A LTR ERVL 17 370 -80 237 180 0 0 chr4 134786660 134786710 -49501952 + GA-rich Low_complexity Low_complexity 1 50 0 243 357 0 0 chr4 134787078 134787148 -49501514 + L2 LINE L2 2993 3062 -210 33 0 0 0 chr4 134787327 134787360 -49501302 + AT_rich Low_complexity Low_complexity 1 33 0 25 31 0 0 chr4 134787974 134788006 -49500656 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr4 134788097 134788120 -49500542 + AT_rich Low_complexity Low_complexity 1 23 0 21 71 0 0 chr4 134788258 134788300 -49500362 + AT_rich Low_complexity Low_complexity 1 42 0 713 179 0 0 chr4 134789694 134789811 -49498851 + FLAM_A SINE Alu 1 117 -16 423 376 35 14 chr4 134789956 134790302 -49498360 + L2 LINE L2 1733 2085 -1229 31 44 0 0 chr4 134790422 134790467 -49498195 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr4 134791551 134791574 -49497088 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr4 134791917 134791946 -49496716 + AT_rich Low_complexity Low_complexity 1 29 0 22 70 0 0 chr4 134793032 134793075 -49495587 + AT_rich Low_complexity Low_complexity 1 43 0 429 291 141 15 chr4 134793555 134793754 -49494908 - MIR SINE MIR -37 225 2 235 279 77 0 chr4 134793788 134793892 -49494770 + L1MC/D LINE L1 5800 5911 -1897 567 303 6 20 chr4 134793950 134794151 -49494511 + MIR SINE MIR 19 222 -40 1928 114 38 0 chr4 134795391 134795513 -49493149 + AluSp SINE Alu 1 117 -196 369 0 0 0 chr4 134795513 134795554 -49493108 + (CA)n Simple_repeat Simple_repeat 2 42 0 1928 114 38 0 chr4 134795554 134795721 -49492941 + AluSp SINE Alu 117 301 -12 332 358 54 25 chr4 134796522 134796762 -49491900 + MIR SINE MIR 16 262 0 285 295 78 11 chr4 134796758 134796888 -49491774 - MIR SINE MIR -65 143 23 * 433 178 67 11 chr4 134797605 134797695 -49490967 - MER63 DNA MER1_type -338 724 4 2267 93 0 10 chr4 134797754 134798064 -49490598 - AluY SINE Alu -4 307 1 26 64 0 0 chr4 134798438 134798485 -49490177 + AT_rich Low_complexity Low_complexity 1 47 0 2394 111 11 24 chr4 134798650 134799030 -49489632 + THE1C LTR MaLR 1 375 0 1941 115 30 7 chr4 134799149 134799444 -49489218 + AluSg SINE Alu 1 302 -8 362 339 41 0 chr4 134799549 134799670 -49488992 - L2 LINE L2 -1 3312 3187 201 316 0 18 chr4 134799667 134799724 -49488938 - MIR3 SINE MIR -44 164 109 * 218 351 53 20 chr4 134799749 134799900 -49488762 - L3b LINE CR1 -324 1259 1104 228 185 0 19 chr4 134800024 134800078 -49488584 + A-rich Low_complexity Low_complexity 3 55 0 224 329 13 0 chr4 134802192 134802271 -49486391 - MIR SINE MIR -125 137 58 25 31 0 0 chr4 134802392 134802424 -49486238 + AT_rich Low_complexity Low_complexity 1 32 0 2002 115 11 3 chr4 134802424 134802710 -49485952 - AluSq SINE Alu -25 288 1 2060 110 38 0 chr4 134804195 134804485 -49484177 + AluSc SINE Alu 1 301 -8 21 0 0 0 chr4 134804570 134804591 -49484071 + AT_rich Low_complexity Low_complexity 1 21 0 5751 66 0 0 chr4 134804617 134805347 -49483315 + L1PA6 LINE L1 5416 6145 -9 1548 164 68 41 chr4 134805604 134805969 -49482693 - THE1C LTR MaLR 0 375 1 1966 229 63 43 chr4 134806036 134806683 -49481979 - MER76 LTR ERV 0 688 29 273 146 0 0 chr4 134806683 134806731 -49481931 + (CA)n Simple_repeat Simple_repeat 1 48 0 35 92 0 0 chr4 134806773 134806871 -49481791 + AT_rich Low_complexity Low_complexity 1 98 0 23 0 0 0 chr4 134807163 134807186 -49481476 + AT_rich Low_complexity Low_complexity 1 23 0 28 71 0 0 chr4 134807446 134807502 -49481160 + AT_rich Low_complexity Low_complexity 1 56 0 496 171 29 0 chr4 134807506 134807611 -49481051 - L1MB8 LINE L1 0 6178 6071 314 194 14 0 chr4 134810066 134810138 -49478524 + (CATATA)n Simple_repeat Simple_repeat 3 75 0 5977 159 71 4 chr4 134810155 134811308 -49477354 - Tigger3b DNA MER2_type 0 1231 2 24 53 0 0 chr4 134811610 134811648 -49477014 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr4 134811761 134811784 -49476878 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr4 134811845 134811869 -49476793 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr4 134811966 134811990 -49476672 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr4 134814987 134815010 -49473652 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 321 360 6 12 chr4 134815328 134815500 -49473162 - L1MC4a LINE L1 -1898 5910 5740 257 269 92 28 chr4 134815962 134816103 -49472559 - L2 LINE L2 -48 3265 3116 577 359 114 29 chr4 134816149 134816659 -49472003 - L2 LINE L2 -496 2818 2266 225 214 31 0 chr4 134817798 134817896 -49470766 + (TA)n Simple_repeat Simple_repeat 2 102 0 221 208 21 0 chr4 134817911 134817959 -49470703 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 3988 118 16 5 chr4 135018219 135018846 -49269816 + L1PA7 LINE L1 4550 5183 -963 5965 65 0 1 chr4 135018857 135019624 -49269038 + L1PA7 LINE L1 5386 6151 -3 1500 201 53 0 chr4 135019692 135019976 -49268686 - AluJo SINE Alu -13 299 1 356 299 86 73 chr4 135020342 135020576 -49268086 - MIR SINE MIR -24 238 2 6593 153 38 6 chr4 135022126 135023319 -49265343 + Tigger3b DNA MER2_type 1 1231 0 4053 145 34 9 chr4 135023693 135024773 -49263889 + L1PA15 LINE L1 4735 5848 -317 1277 180 16 16 chr4 135025078 135025333 -49263329 - MER54B LTR ERVL 0 793 539 278 50 25 0 chr4 135026011 135026051 -49262611 + (TG)n Simple_repeat Simple_repeat 2 42 0 780 319 65 5 chr4 135026367 135026768 -49261894 + MER20B DNA MER1_type 1 425 -358 279 0 0 0 chr4 135026801 135026832 -49261830 + (TG)n Simple_repeat Simple_repeat 2 32 0 210 37 0 0 chr4 135026834 135026861 -49261801 + (GA)n Simple_repeat Simple_repeat 2 28 0 971 243 42 39 chr4 135026871 135027256 -49261406 - MLT2D LTR ERVL -67 397 1 465 234 157 25 chr4 135027380 135027615 -49261047 + MER20B DNA MER1_type 518 783 0 367 347 95 33 chr4 135027990 135028411 -49260251 + MLT1J2 LTR MaLR 1 447 -3 35 24 0 0 chr4 135028999 135029041 -49259621 + AT_rich Low_complexity Low_complexity 1 42 0 1975 87 45 11 chr4 135029088 135029374 -49259288 - AluSc SINE Alu -11 298 3 23 33 0 0 chr4 135029419 135029449 -49259213 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr4 135029842 135029872 -49258790 + AT_rich Low_complexity Low_complexity 1 30 0 24 77 0 0 chr4 135030114 135030166 -49258496 + AT_rich Low_complexity Low_complexity 1 52 0 411 171 118 53 chr4 135030678 135030830 -49257832 - MER53 DNA DNA -24 165 4 1279 231 106 55 chr4 135031003 135031531 -49257131 - MER34B LTR ERV1 0 565 11 44 88 0 0 chr4 135031825 135031939 -49256723 + AT_rich Low_complexity Low_complexity 1 114 0 735 183 177 92 chr4 135032164 135032797 -49255865 - MER4C LTR ERV1 0 695 2 22 35 0 0 chr4 135033117 135033146 -49255516 + AT_rich Low_complexity Low_complexity 1 29 0 520 146 10 0 chr4 135033820 135033916 -49254746 - L1PA15 LINE L1 -4 6161 6065 2640 203 14 15 chr4 135033917 135034622 -49254040 - L1P4 LINE L1 -717 6099 5399 2713 66 98 5 chr4 135034622 135035032 -49253630 - LTR7 LTR ERV1 -2 448 1 2323 101 50 13 chr4 135035032 135035410 -49253252 - HERVH LTR ERV1 0 7713 7322 1370 134 18 5 chr4 135035408 135035625 -49253037 - HERVH LTR ERV1 -1894 5819 5600 * 4371 136 0 3 chr4 135035629 135036290 -49252372 - HERVH LTR ERV1 -2567 5146 4488 3476 95 4 6 chr4 135036292 135036795 -49251867 - HERVH LTR ERV1 -3720 3993 3492 870 149 20 0 chr4 135036785 135036933 -49251729 - HERVH LTR ERV1 -4423 3290 3140 * 19072 103 35 6 chr4 135036929 135039829 -49248833 - HERVH LTR ERV1 -4728 2985 1 2538 76 108 7 chr4 135039831 135040238 -49248424 - LTR7 LTR ERV1 -2 448 1 12528 236 29 27 chr4 135040238 135045418 -49243244 - L1P4 LINE L1 -1392 5405 1 667 191 0 24 chr4 135045454 135045580 -49243082 + AluSg/x SINE Alu 162 284 -28 351 0 0 0 chr4 135045580 135045619 -49243043 + (CATA)n Simple_repeat Simple_repeat 2 40 0 23 33 0 0 chr4 135047749 135047779 -49240883 + AT_rich Low_complexity Low_complexity 1 30 0 1789 297 161 26 chr4 135048474 135049412 -49239250 + MER69 DNA AcHobo 1 1065 -1461 272 214 19 58 chr4 135049601 135049704 -49238958 + MER69 DNA AcHobo 2245 2343 -183 301 299 35 0 chr4 135049706 135049793 -49238869 + MIR SINE MIR 65 154 -108 213 288 72 24 chr4 135049831 135049930 -49238732 + MIR SINE MIR 73 176 -65 385 298 170 27 chr4 135050330 135050731 -49237931 + LTR33 LTR ERVL 3 499 -22 272 385 0 0 chr4 135051650 135051798 -49236864 + ERVL LTR ERVL 1584 1731 -4033 240 86 0 0 chr4 135051852 135051887 -49236775 + (CA)n Simple_repeat Simple_repeat 1 35 0 420 235 12 0 chr4 135052044 135052125 -49236537 - MER2 DNA MER2_type -262 83 2 550 246 202 72 chr4 135052148 135052539 -49236123 - MLT1F1 LTR MaLR -5 585 144 1497 247 55 55 chr4 135053016 135053615 -49235047 - L1ME2 LINE L1 -17 6147 5549 185 323 0 15 chr4 135053672 135053737 -49234925 + MIR SINE MIR 91 154 -108 21 82 0 0 chr4 135054493 135054542 -49234120 + AT_rich Low_complexity Low_complexity 1 49 0 272 100 0 20 chr4 135055021 135055071 -49233591 + (GGAA)n Simple_repeat Simple_repeat 2 50 0 4351 142 164 26 chr4 135055071 135056067 -49232595 + MER11B LTR ERVK 1 1236 0 758 149 7 0 chr4 135056067 135056215 -49232447 + GA-rich Low_complexity Low_complexity 2 150 0 411 302 204 0 chr4 135056669 135056904 -49231758 + L1MC/D LINE L1 5523 5805 -2003 21 57 0 0 chr4 135057447 135057482 -49231180 + AT_rich Low_complexity Low_complexity 1 35 0 21 82 0 0 chr4 135058046 135058095 -49230567 + AT_rich Low_complexity Low_complexity 1 49 0 2110 104 27 0 chr4 135061832 135062130 -49226532 - AluSp SINE Alu -7 306 1 27 0 0 0 chr4 135062385 135062412 -49226250 + AT_rich Low_complexity Low_complexity 1 27 0 2601 174 78 30 chr4 135062766 135063359 -49225303 - L1MC3 LINE L1 -7 7778 7158 863 249 76 67 chr4 135063359 135063700 -49224962 - MER2 DNA MER2_type 0 345 2 1742 207 17 68 chr4 135063701 135064175 -49224487 - L1MC3 LINE L1 -626 7159 6710 440 307 64 32 chr4 135064169 135064420 -49224242 - L1M4 LINE L1 -1849 4297 4039 * 492 250 20 95 chr4 135064408 135064608 -49224054 - L1MCb LINE L1 -5765 280 96 4385 198 27 16 chr4 135064785 135065676 -49222986 - MER54A LTR ERVL 0 901 1 27 73 0 0 chr4 135065844 135065899 -49222763 + AT_rich Low_complexity Low_complexity 1 55 0 585 190 78 49 chr4 135068121 135068263 -49220399 + MLT1B LTR MaLR 198 343 -47 14535 98 7 6 chr4 135069477 135070030 -49218632 + L1P LINE L1 2445 2996 -3150 2382 66 3 3 chr4 135070030 135070334 -49218328 - AluY SINE Alu -7 304 1 14535 98 7 6 chr4 135070334 135071913 -49216749 + L1P LINE L1 2996 4579 -1567 1145 131 6 0 chr4 135072013 135072196 -49216466 + L1PA15 LINE L1 5968 6151 -14 211 362 9 9 chr4 135072397 135072502 -49216160 + MIR3 SINE MIR 54 158 -50 443 311 115 0 chr4 135072567 135072750 -49215912 - MIR SINE MIR 0 262 59 2725 69 11 0 chr4 135073623 135073984 -49214678 - L1PA5 LINE L1 -2 6152 5788 24 67 0 0 chr4 135074123 135074168 -49214494 + AT_rich Low_complexity Low_complexity 1 45 0 26 50 0 0 chr4 135075773 135075813 -49212849 + AT_rich Low_complexity Low_complexity 1 40 0 1623 137 113 11 chr4 135075863 135076147 -49212515 + AluSp SINE Alu 1 313 0 26 0 0 0 chr4 135076479 135076505 -49212157 + AT_rich Low_complexity Low_complexity 1 26 0 264 122 0 0 chr4 135077900 135077941 -49210721 + (A)n Simple_repeat Simple_repeat 1 41 0 234 326 0 22 chr4 135078157 135078249 -49210413 + GA-rich Low_complexity Low_complexity 4 93 0 1593 186 49 22 chr4 135078533 135078898 -49209764 + THE1C LTR MaLR 1 375 0 2030 176 0 9 chr4 135079698 135080038 -49208624 + MER1B DNA MER1_type 1 337 0 288 326 54 32 chr4 135081145 135081366 -49207296 - MERVL LTR ERVL -393 5092 4867 1782 166 47 17 chr4 135081590 135081952 -49206710 + THE1C LTR MaLR 1 373 -2 9243 136 49 9 chr4 135081954 135083474 -49205188 + THE1C-int LTR MaLR 1 1580 0 1837 155 63 28 chr4 135083474 135083836 -49204826 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr4 135083912 135083933 -49204729 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr4 135084179 135084214 -49204448 + AT_rich Low_complexity Low_complexity 1 35 0 384 259 14 130 chr4 135084586 135084688 -49203974 + MIR SINE MIR 72 138 -124 1457 201 45 34 chr4 135084688 135085046 -49203616 - MLT1A1 LTR MaLR -3 362 1 384 259 14 130 chr4 135085046 135085159 -49203503 + MIR SINE MIR 138 262 0 1329 167 109 12 chr4 135085411 135085704 -49202958 - AluJb SINE Alu 0 318 1 1184 285 54 38 chr4 135086640 135087327 -49201335 + L1M4 LINE L1 3490 4187 -1959 470 283 7 14 chr4 135089210 135089348 -49199314 + L1PA13 LINE L1 1 137 -6650 8677 205 37 26 chr4 135089354 135090121 -49198541 + L1 LINE L1 3168 3925 -2221 1965 105 4 0 chr4 135090121 135090388 -49198274 + AluY SINE Alu 37 304 -7 8677 205 37 26 chr4 135090388 135091795 -49196867 + L1 LINE L1 3925 5366 -780 2056 154 72 0 chr4 135091792 135092481 -49196181 - L1PBa LINE L1 -3586 3276 2540 * 613 168 0 38 chr4 135092473 135092604 -49196058 - L1PBa LINE L1 -5908 955 830 * 7456 180 15 9 chr4 135092608 135093544 -49195118 + L1PB1 LINE L1 3755 4684 -1467 210 37 0 0 chr4 135093544 135093571 -49195091 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7456 180 15 9 chr4 135093571 135094308 -49194354 + L1PB1 LINE L1 4684 5415 -736 1804 117 99 0 chr4 135094308 135094591 -49194071 + AluSp SINE Alu 3 313 0 7456 180 15 9 chr4 135094591 135095298 -49193364 + L1PB1 LINE L1 5415 6148 -3 263 73 0 24 chr4 135095298 135095339 -49193323 + L1MB5 LINE L1 6127 6166 -8 676 198 40 6 chr4 135095601 135095778 -49192884 - L1ME3A LINE L1 -220 5950 5768 5215 99 21 15 chr4 135095780 135096575 -49192087 + L1PB1 LINE L1 5352 6151 0 * 7894 266 73 11 chr4 135096568 135097254 -49191408 + L1P LINE L1 1437 2080 -4066 2010 141 24 123 chr4 135097254 135097800 -49190862 + LTR22B LTR ERVK 1 492 0 7894 266 73 11 chr4 135097800 135099633 -49189029 + L1P LINE L1 2080 4128 -2018 3472 33 2 2 chr4 135099633 135100096 -49188566 - L1PA4 LINE L1 0 6155 5733 7894 266 73 11 chr4 135100096 135100217 -49188445 + L1P LINE L1 4128 4240 -1906 283 395 14 20 chr4 135101039 135101186 -49187476 - MIR SINE MIR -46 216 71 808 254 57 33 chr4 135101497 135101833 -49186829 + L1ME2 LINE L1 5288 5631 -533 1069 281 32 30 chr4 135101834 135102240 -49186422 + L1ME2 LINE L1 5748 6154 -10 306 293 130 38 chr4 135102690 135102929 -49185733 + L1ME LINE L1 5112 5372 -774 300 333 36 29 chr4 135103205 135103343 -49185319 + L2 LINE L2 3175 3313 0 22 35 0 0 chr4 135103382 135103411 -49185251 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr4 135105928 135105954 -49182708 + AT_rich Low_complexity Low_complexity 1 26 0 251 310 112 9 chr4 135106153 135106269 -49182393 - L3b LINE CR1 -196 1387 1260 182 125 0 50 chr4 135107295 135107335 -49181327 + (TATG)n Simple_repeat Simple_repeat 3 40 0 238 123 88 0 chr4 135107381 135107438 -49181224 + L1MCa LINE L1 2007 2068 -4358 347 215 41 6 chr4 135107473 135107645 -49181017 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 290 260 19 0 chr4 135107698 135107802 -49180860 + (TA)n Simple_repeat Simple_repeat 2 107 0 22 35 0 0 chr4 135108565 135108594 -49180068 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr4 135110444 135110469 -49178193 + AT_rich Low_complexity Low_complexity 1 25 0 267 327 138 12 chr4 135110630 135110884 -49177778 + L1ME LINE L1 5502 5787 -334 1271 161 124 11 chr4 135111316 135111583 -49177079 + AluJo SINE Alu 6 302 -10 898 254 18 14 chr4 135111694 135112033 -49176629 - MER76 LTR ERV -254 434 6 2094 241 61 19 chr4 135112042 135112566 -49176096 - MER77 LTR ERV1 -6 599 54 378 241 72 121 chr4 135112593 135112842 -49175820 + L2 LINE L2 1612 1848 -1466 658 335 72 50 chr4 135112867 135113280 -49175382 + MLT1J LTR MaLR 1 426 -85 2297 174 20 83 chr4 135113280 135113825 -49174837 - MLT2B2 LTR ERVL -4 511 1 658 335 72 50 chr4 135113825 135113871 -49174791 + MLT1J LTR MaLR 426 470 -41 777 182 27 0 chr4 135114045 135114193 -49174469 + MLT2C1 LTR ERVL 5 156 -241 2144 337 116 40 chr4 135114566 135116262 -49172400 + L2 LINE L2 482 2305 -1009 447 334 171 32 chr4 135116344 135116809 -49171853 + L2 LINE L2 2788 3313 0 * 605 336 66 44 chr4 135116805 135117598 -49171064 + L2 LINE L2 2455 3309 -4 24 32 0 0 chr4 135117678 135117709 -49170953 + AT_rich Low_complexity Low_complexity 1 31 0 1567 200 86 65 chr4 135118060 135118569 -49170093 - MLT2B1 LTR ERVL 0 520 1 20284 197 24 9 chr4 135118569 135122578 -49166084 - ERVL LTR ERVL -7 5757 1699 981 150 150 5 chr4 135122578 135122765 -49165897 + MSTA LTR MaLR 1 214 -214 564 154 11 0 chr4 135122765 135122856 -49165806 + MSTA LTR MaLR 335 426 -2 2309 211 28 39 chr4 135122857 135123396 -49165266 - ERVL LTR ERVL -4060 1704 1172 6396 196 106 33 chr4 135123400 135123953 -49164709 + MER52A LTR ERV1 1 513 -1242 2218 155 5 16 chr4 135123953 135124321 -49164341 + THE1B LTR MaLR 1 364 0 6396 196 106 33 chr4 135124321 135125334 -49163328 + MER52A LTR ERV1 513 1755 0 1957 230 56 9 chr4 135125335 135126385 -49162277 - ERVL LTR ERVL -4594 1170 2 279 0 0 0 chr4 135126416 135126447 -49162215 + (TG)n Simple_repeat Simple_repeat 1 31 0 25 31 0 0 chr4 135128388 135128420 -49160242 + AT_rich Low_complexity Low_complexity 1 32 0 224 280 0 9 chr4 135129192 135129299 -49159363 + (TA)n Simple_repeat Simple_repeat 1 106 0 389 278 74 74 chr4 135129962 135130514 -49158148 - L1MEd LINE L1 -4595 1801 1215 556 354 79 25 chr4 135130553 135130920 -49157742 + REP3 LTR ERV 4 390 -172 230 279 80 42 chr4 135131182 135131469 -49157193 - L1MEd LINE L1 -5285 1111 814 360 0 0 0 chr4 135131589 135131629 -49157033 + (TCTA)n Simple_repeat Simple_repeat 4 43 0 279 0 0 0 chr4 135131646 135131677 -49156985 + (CA)n Simple_repeat Simple_repeat 2 32 0 3876 232 12 10 chr4 135132114 135133108 -49155554 - L1PA13 LINE L1 -3167 3630 2635 3944 76 12 23 chr4 135133112 135133677 -49154985 - L1PA7 LINE L1 -5 6149 5591 18057 156 81 8 chr4 135133677 135137207 -49151455 - L1P LINE L1 -2352 3794 10 6965 199 40 32 chr4 135137217 135137793 -49150869 - L1PA13 LINE L1 -4147 2650 2080 2017 156 0 9 chr4 135137793 135138108 -49150554 - AluSx SINE Alu 0 312 1 6965 199 40 32 chr4 135138108 135139261 -49149401 - L1PA13 LINE L1 -4717 2080 882 34444 113 8 14 chr4 135139400 135142270 -49146392 + L1PA7 LINE L1 11 2895 -3259 2287 119 0 0 chr4 135142270 135142573 -49146089 + AluSp SINE Alu 1 303 -10 34444 113 8 14 chr4 135142573 135145702 -49142960 + L1PA7 LINE L1 2895 5976 -178 296 135 0 6 chr4 135145702 135145757 -49142905 - Alu SINE Alu -258 41 2 1759 173 10 3 chr4 135145884 135146185 -49142477 + AluSx SINE Alu 1 303 -9 7424 34 3 2 chr4 135146820 135147778 -49140884 + L1PA4 LINE L1 5197 6155 0 3317 224 39 8 chr4 135147906 135149489 -49139173 + L1MC2 LINE L1 4404 6040 -260 1833 175 26 0 chr4 135149743 135150046 -49138616 + AluJb SINE Alu 2 312 0 214 283 0 0 chr4 135150725 135150778 -49137884 + GA-rich Low_complexity Low_complexity 2 54 0 339 0 59 0 chr4 135151720 135151771 -49136891 + (TA)n Simple_repeat Simple_repeat 1 54 0 300 207 110 0 chr4 135151771 135151853 -49136809 + L1MC4 LINE L1 6612 6702 -1340 285 29 0 0 chr4 135151853 135151887 -49136775 + (CA)n Simple_repeat Simple_repeat 1 34 0 23 0 0 0 chr4 135152034 135152057 -49136605 + AT_rich Low_complexity Low_complexity 1 23 0 30 27 0 0 chr4 135153800 135153837 -49134825 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr4 135154448 135154471 -49134191 + AT_rich Low_complexity Low_complexity 1 23 0 189 200 22 0 chr4 135154609 135154654 -49134008 + L2 LINE L2 3263 3308 -5 1911 212 43 10 chr4 135155253 135155673 -49132989 + MLT2C2 LTR ERVL 1 482 -38 1414 270 60 25 chr4 135155876 135156310 -49132352 - MER70B LTR ERVL -128 450 2 199 298 144 10 chr4 135157179 135157283 -49131379 - L2 LINE L2 -1813 1501 1384 1740 140 0 0 chr4 135159056 135159306 -49129356 + AluSx SINE Alu 48 297 -15 21 89 0 0 chr4 135160283 135160339 -49128323 + AT_rich Low_complexity Low_complexity 1 56 0 306 0 0 0 chr4 135160459 135160493 -49128169 + (TG)n Simple_repeat Simple_repeat 2 35 0 1580 191 10 23 chr4 135160508 135160811 -49127851 - AluJb SINE Alu -13 299 1 2335 70 0 55 chr4 135160897 135161225 -49127437 + AluY SINE Alu 1 310 -1 1467 109 42 0 chr4 135161332 135161571 -49127091 + L1MA2 LINE L1 6056 6304 0 633 65 28 9 chr4 135162562 135162670 -49125992 + (TCTA)n Simple_repeat Simple_repeat 4 113 0 463 350 26 9 chr4 135164816 135165042 -49123620 - MIR SINE MIR -26 236 7 22 35 0 0 chr4 135165142 135165171 -49123491 + AT_rich Low_complexity Low_complexity 1 29 0 4597 112 7 3 chr4 135165543 135166232 -49122430 - L1PA13 LINE L1 -4 6159 5468 2609 98 27 5 chr4 135166234 135166601 -49122061 - THE1C LTR MaLR 0 375 1 6121 159 15 8 chr4 135166601 135167628 -49121034 - THE1C-int LTR MaLR 0 1580 547 680 223 13 29 chr4 135167702 135167889 -49120773 + MER61D LTR ERV1 338 1237 -16 3084 164 20 13 chr4 135167895 135168528 -49120134 + L1P LINE L1 3073 3710 -2436 360 298 151 9 chr4 135168603 135168821 -49119841 + L1ME4a LINE L1 5604 5852 -269 1580 233 34 34 chr4 135170155 135170622 -49118040 - MLT1C LTR MaLR 0 467 1 184 316 51 0 chr4 135171411 135171490 -49117172 - L3b LINE CR1 -74 1509 1427 214 304 0 0 chr4 135171596 135171652 -49117010 - MIR SINE MIR -27 235 180 6199 101 23 0 chr4 135171947 135172916 -49115746 - L1PB1 LINE L1 -1 6150 5160 1556 75 0 5 chr4 135172918 135173131 -49115531 + L1PB1 LINE L1 5940 6151 0 21 0 0 0 chr4 135173619 135173640 -49115022 + AT_rich Low_complexity Low_complexity 1 21 0 195 389 0 14 chr4 135174013 135174085 -49114577 + L2 LINE L2 3160 3230 -42 21 36 0 0 chr4 135174390 135174418 -49114244 + AT_rich Low_complexity Low_complexity 1 28 0 1877 179 18 0 chr4 135175531 135175871 -49112791 + MLT1A1 LTR MaLR 1 346 -19 461 257 53 12 chr4 135176691 135176856 -49111806 - MER63 DNA MER1_type -70 766 2 26 30 0 0 chr4 135177626 135177659 -49111003 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr4 135177745 135177769 -49110893 + AT_rich Low_complexity Low_complexity 1 24 0 1985 139 0 0 chr4 135177950 135178237 -49110425 + AluSx SINE Alu 9 295 -17 4647 160 39 63 chr4 135178660 135179811 -49108851 - L1MA4A LINE L1 -12 6291 5151 * 41348 63 3 1 chr4 135179810 135185942 -49102720 + L1PA5 LINE L1 1 6146 -8 3565 183 21 0 chr4 135185982 135186697 -49101965 - L1MA4A LINE L1 -979 5167 4438 1175 193 17 4 chr4 135186800 135187038 -49101624 + L1 LINE L1 4090 4330 -1816 1699 163 108 25 chr4 135187250 135187649 -49101013 + MSTB1 LTR MaLR 1 432 0 1196 289 97 26 chr4 135188422 135188886 -49099776 - L2 LINE L2 -498 2816 2320 33 66 0 0 chr4 135190460 135190521 -49098141 + AT_rich Low_complexity Low_complexity 1 61 0 3099 311 216 12 chr4 135190763 135192461 -49096201 - L2 LINE L2 -1170 2144 100 21 0 0 0 chr4 135193785 135193806 -49094856 + AT_rich Low_complexity Low_complexity 1 21 0 24 67 0 0 chr4 135193842 135193887 -49094775 + AT_rich Low_complexity Low_complexity 1 45 0 27 0 0 0 chr4 135193925 135193952 -49094710 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr4 135194505 135194527 -49094135 + AT_rich Low_complexity Low_complexity 1 22 0 182 318 71 24 chr4 135194624 135194709 -49093953 - MIR SINE MIR -81 127 39 22 35 0 0 chr4 135195025 135195054 -49093608 + AT_rich Low_complexity Low_complexity 1 29 0 243 241 0 0 chr4 135195316 135195370 -49093292 + (CA)n Simple_repeat Simple_repeat 2 55 0 471 261 62 28 chr4 135195559 135195735 -49092927 + L1ME1 LINE L1 5977 6158 -8 586 14 0 0 chr4 135195878 135195996 -49092666 + L1PA3 LINE L1 6083 6200 0 220 204 0 0 chr4 135196177 135196226 -49092436 + CT-rich Low_complexity Low_complexity 1 49 0 186 217 22 0 chr4 135197808 135197854 -49090808 + L2 LINE L2 3257 3303 -10 2308 98 3 0 chr4 135199022 135199328 -49089334 + AluSp SINE Alu 1 307 -6 26 74 0 0 chr4 135200035 135200089 -49088573 + AT_rich Low_complexity Low_complexity 1 54 0 223 247 31 10 chr4 135200378 135200475 -49088187 + (TA)n Simple_repeat Simple_repeat 2 100 0 771 236 104 12 chr4 135201002 135201050 -49087612 + MLT1A1 LTR MaLR 93 135 -230 7337 44 0 4 chr4 135201050 135202702 -49085960 + L1PA5 LINE L1 4507 6154 0 771 236 104 12 chr4 135202702 135202903 -49085759 + MLT1A1 LTR MaLR 135 365 0 215 296 12 12 chr4 135203607 135203688 -49084974 + (CATA)n Simple_repeat Simple_repeat 2 82 0 246 369 55 51 chr4 135203964 135204200 -49084462 + L2 LINE L2 2544 2780 -534 1739 248 51 72 chr4 135204705 135205387 -49083275 + LTR8 LTR ERV1 16 683 -8 569 202 24 42 chr4 135205432 135205600 -49083062 - L1MA9 LINE L1 -38 6274 6110 2022 258 54 28 chr4 135205631 135206583 -49082079 + L1ME1 LINE L1 4963 6162 -4 2575 243 89 53 chr4 135206725 135207548 -49081114 + MER21B LTR ERV1 1 852 -11 1419 257 66 31 chr4 135207657 135208170 -49080492 + LTR55 LTR ERV 1 531 -17 180 0 0 0 chr4 135208388 135208408 -49080254 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 411 323 80 30 chr4 135208853 135209116 -49079546 + HERVL LTR ERVL 3769 4044 -1610 282 361 17 0 chr4 135209416 135209535 -49079127 + LTR16A1 LTR ERVL 1 121 -336 354 281 167 16 chr4 135209576 135209768 -49078894 + LTR16A1 LTR ERVL 220 440 -17 469 379 32 16 chr4 135209839 135210148 -49078514 + HERVL LTR ERVL 4562 4875 -889 183 304 29 69 chr4 135210990 135211092 -49077570 + MIR SINE MIR 21 118 -90 429 20 0 0 chr4 135211456 135211506 -49077156 + (TA)n Simple_repeat Simple_repeat 1 50 0 279 213 12 50 chr4 135212423 135212503 -49076159 + L2 LINE L2 3235 3311 -2 881 138 7 0 chr4 135213215 135213353 -49075309 - AluSq/x SINE Alu -173 139 1 432 117 39 0 chr4 135214232 135214309 -49074353 - MADE1 DNA Mariner 0 80 1 7674 27 0 0 chr4 135214878 135215984 -49072678 - L1PA3 LINE L1 0 6155 5050 192 303 81 30 chr4 135218051 135218150 -49070512 - L2 LINE L2 0 3313 3210 271 318 131 0 chr4 135218558 135218665 -49069997 - L2 LINE L2 0 3313 3193 928 199 34 17 chr4 135218929 135219165 -49069497 + L1MC4 LINE L1 7363 7602 -440 1518 238 12 0 chr4 135220985 135221304 -49067358 + MER77 LTR ERV1 276 598 -7 21 95 0 0 chr4 135221729 135221792 -49066870 + AT_rich Low_complexity Low_complexity 1 63 0 1580 186 0 0 chr4 135222100 135222379 -49066283 + AluJb SINE Alu 1 279 -33 22 35 0 0 chr4 135222703 135222732 -49065930 + AT_rich Low_complexity Low_complexity 1 29 0 190 305 0 0 chr4 135225018 135225077 -49063585 - MIR SINE MIR -68 140 82 260 175 16 16 chr4 135225419 135225482 -49063180 + GA-rich Low_complexity Low_complexity 1 63 0 285 326 43 100 chr4 135225586 135225865 -49062797 - L2 LINE L2 -17 3255 2993 2134 108 3 13 chr4 135225887 135226193 -49062469 + AluSq SINE Alu 1 303 -10 28 29 0 0 chr4 135226721 135226756 -49061906 + AT_rich Low_complexity Low_complexity 1 35 0 209 146 21 0 chr4 135227106 135227154 -49061508 + (TA)n Simple_repeat Simple_repeat 1 49 0 311 115 0 19 chr4 135227585 135227637 -49061025 - Alu SINE Alu -250 51 1 215 91 0 45 chr4 135227666 135227710 -49060952 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 303 186 43 48 chr4 135228608 135228732 -49059930 + L1MC/D LINE L1 5723 5844 -303 297 320 40 40 chr4 135228747 135228872 -49059790 - L2 LINE L2 0 3313 3189 35 41 0 0 chr4 135228910 135228959 -49059703 + AT_rich Low_complexity Low_complexity 1 49 0 28 48 0 0 chr4 135229237 135229279 -49059383 + AT_rich Low_complexity Low_complexity 1 42 0 21 57 0 0 chr4 135229416 135229451 -49059211 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr4 135229761 135229790 -49058872 + AT_rich Low_complexity Low_complexity 1 29 0 2043 125 3 34 chr4 135229904 135230225 -49058437 + AluSx SINE Alu 1 311 -1 7254 142 10 69 chr4 135231466 135231928 -49056734 + HSMAR2 DNA Mariner 1 489 -813 3667 168 36 11 chr4 135231928 135232626 -49056036 + LTR62 LTR ERVK 3 717 -2 7254 142 10 69 chr4 135232626 135233337 -49055325 + HSMAR2 DNA Mariner 489 1083 -219 473 215 215 0 chr4 135233337 135233481 -49055181 - FAM SINE Alu 0 175 1 7254 142 10 69 chr4 135233481 135233689 -49054973 + HSMAR2 DNA Mariner 1083 1302 0 762 99 25 99 chr4 135334870 135335031 -48953631 + LTR49-int LTR ERV1 5671 5819 -512 423 0 0 0 chr4 135335039 135335086 -48953576 + (CA)n Simple_repeat Simple_repeat 2 48 0 42005 41 23 1 chr4 135335092 135340699 -48947963 - L1P1 LINE L1 -416 5739 7 3448 95 17 27 chr4 135340708 135341395 -48947267 - MER11A LTR ERVK -486 750 1 1785 200 40 79 chr4 135341435 135341510 -48947152 - MER61C-int LTR ERV1 -4763 454 378 1499 106 0 0 chr4 135341510 135341708 -48946954 - AluY SINE Alu -14 297 100 1785 200 40 79 chr4 135341708 135342103 -48946559 - MER61C-int LTR ERV1 -4839 378 2 1792 153 92 73 chr4 135342103 135342516 -48946146 - MER61C LTR ERV1 0 434 14 239 265 0 0 chr4 135342484 135342533 -48946129 - LTR28 LTR ERV1 -959 61 13 * 785 201 19 13 chr4 135342535 135342694 -48945968 + MER4C-int LTR ERV1 6438 6597 -1 642 253 76 32 chr4 135342695 135342824 -48945838 + MER4C LTR ERV1 1 123 -342 1285 238 13 7 chr4 135342824 135343131 -48945531 - AluJb SINE Alu -1 311 3 642 253 76 32 chr4 135343131 135343250 -48945412 + MER4C LTR ERV1 123 260 -205 368 256 11 0 chr4 135343224 135343314 -48945348 + LTR34 LTR ERV1 429 519 -180 * 31 0 0 0 chr4 135343573 135343604 -48945058 + AT_rich Low_complexity Low_complexity 1 31 0 216 179 0 0 chr4 135344274 135344313 -48944349 + A-rich Low_complexity Low_complexity 1 39 0 333 336 23 0 chr4 135344644 135344775 -48943887 - Charlie8 DNA MER1_type -2196 221 88 32 57 0 0 chr4 135345204 135345257 -48943405 + AT_rich Low_complexity Low_complexity 1 53 0 261 230 69 0 chr4 135345683 135345770 -48942892 + HAL1 LINE L1 1034 1126 -1381 285 29 0 0 chr4 135345989 135346023 -48942639 + (TG)n Simple_repeat Simple_repeat 2 35 0 648 240 0 0 chr4 135346072 135346193 -48942469 - FLAM_A SINE Alu -21 121 1 235 259 111 9 chr4 135346239 135346347 -48942315 - L2 LINE L2 -43 3270 3152 353 121 0 15 chr4 135346354 135346420 -48942242 + (TA)n Simple_repeat Simple_repeat 1 65 0 24 0 0 0 chr4 135347049 135347073 -48941589 + AT_rich Low_complexity Low_complexity 1 24 0 654 240 62 36 chr4 135348165 135348390 -48940272 - MIR SINE MIR 0 262 32 453 189 0 0 chr4 135349149 135349244 -48939418 + CT-rich Low_complexity Low_complexity 1 95 0 2118 235 50 2 chr4 135349341 135349856 -48938806 - MER90 LTR ERV1 0 614 75 401 274 41 96 chr4 135350359 135350578 -48938084 - L2 LINE L2 0 3313 3107 1714 187 181 0 chr4 135350578 135350931 -48937731 + MSTB LTR MaLR 1 417 -9 5594 187 78 9 chr4 135350972 135352103 -48936559 + MSTB-int LTR MaLR 443 1651 0 2084 159 89 0 chr4 135352103 135352494 -48936168 + MSTB LTR MaLR 1 426 0 256 367 69 16 chr4 135352496 135352684 -48935978 - L2 LINE L2 -204 3109 2912 696 265 182 38 chr4 135352715 135353111 -48935551 - MLT1C LTR MaLR -14 453 1 649 328 123 29 chr4 135353124 135353612 -48935050 - L2 LINE L2 -425 2889 2356 477 326 45 45 chr4 135353689 135353999 -48934663 + L1MEd LINE L1 873 1182 -4937 1364 224 36 40 chr4 135354291 135354711 -48933951 + LTR37A LTR ERV1 9 426 0 317 243 75 28 chr4 135355136 135355243 -48933419 + MER31-int LTR ERV1 1028 1139 -3797 24 77 0 0 chr4 135355421 135355473 -48933189 + AT_rich Low_complexity Low_complexity 1 52 0 25 51 0 0 chr4 135355902 135355941 -48932721 + AT_rich Low_complexity Low_complexity 1 39 0 1568 217 85 64 chr4 135356408 135356938 -48931724 - LTR68 LTR ERV1 0 740 200 246 295 0 16 chr4 135357300 135357361 -48931301 + MER5A DNA MER1_type 44 103 -86 351 250 37 0 chr4 135357720 135357828 -48930834 + MER31-int LTR ERV1 3171 3282 -1654 2259 105 3 0 chr4 135357844 135358150 -48930512 + AluSx SINE Alu 1 307 -5 1253 266 41 86 chr4 135358310 135359116 -48929546 + MER31-int LTR ERV1 3404 4173 -763 1873 185 17 6 chr4 135359120 135359477 -48929185 + MLT1A1 LTR MaLR 5 365 0 1392 178 58 26 chr4 135359603 135359945 -48928717 + LTR37A LTR ERV1 22 374 -52 342 0 0 0 chr4 135360078 135360116 -48928546 + (CA)n Simple_repeat Simple_repeat 1 38 0 28 29 0 0 chr4 135360524 135360559 -48928103 + AT_rich Low_complexity Low_complexity 1 35 0 546 332 184 14 chr4 135360868 135361314 -48927348 + MLT1H LTR MaLR 12 533 -16 2888 211 31 7 chr4 135361333 135361916 -48926746 + MER77 LTR ERV1 7 603 -2 195 42 0 0 chr4 135362640 135362664 -48925998 + (T)n Simple_repeat Simple_repeat 1 24 0 24 0 0 0 chr4 135363107 135363131 -48925531 + AT_rich Low_complexity Low_complexity 1 24 0 509 315 124 34 chr4 135363152 135363539 -48925123 + ERVL LTR ERVL 1740 2161 -3603 762 361 56 2 chr4 135363736 135364162 -48924500 + ERVL LTR ERVL 2456 2904 -2860 364 288 163 38 chr4 135364178 135364338 -48924324 - MER5A DNA MER1_type 0 189 10 1152 330 76 37 chr4 135364355 135365352 -48923310 + ERVL LTR ERVL 2903 3938 -1716 186 43 0 0 chr4 135365429 135365452 -48923210 + (TTTTC)n Simple_repeat Simple_repeat 4 26 0 1049 304 47 43 chr4 135365476 135365920 -48922742 + ERVL LTR ERVL 4104 4549 -1105 21 0 0 0 chr4 135367077 135367098 -48921564 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 135367764 135367786 -48920876 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr4 135368103 135368136 -48920526 + AT_rich Low_complexity Low_complexity 1 33 0 708 361 95 35 chr4 135368402 135369052 -48919610 + L2 LINE L2 2258 2946 -368 207 0 0 0 chr4 135369692 135369715 -48918947 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 21 36 0 0 chr4 135371174 135371202 -48917460 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 135371663 135371686 -48916976 + AT_rich Low_complexity Low_complexity 1 23 0 30 59 0 0 chr4 135371896 135371947 -48916715 + AT_rich Low_complexity Low_complexity 1 51 0 25 0 0 0 chr4 135372575 135372600 -48916062 + AT_rich Low_complexity Low_complexity 1 25 0 23 78 0 0 chr4 135373778 135373829 -48914833 + AT_rich Low_complexity Low_complexity 1 51 0 181 291 78 39 chr4 135373866 135373969 -48914693 - L3 LINE CR1 -283 1294 1188 300 325 33 7 chr4 135374132 135374283 -48914379 - L1MEc LINE L1 -5348 765 611 320 342 59 37 chr4 135374571 135374945 -48913717 - L1MEc LINE L1 -5951 445 64 413 332 59 21 chr4 135375012 135375199 -48913463 - MIR SINE MIR -49 213 20 217 312 210 0 chr4 135375394 135375532 -48913130 - MIR SINE MIR -3 259 93 23 0 0 0 chr4 135375876 135375899 -48912763 + AT_rich Low_complexity Low_complexity 1 23 0 391 299 71 13 chr4 135375987 135376141 -48912521 - MIR SINE MIR -14 248 86 220 219 8 32 chr4 135376364 135376487 -48912175 + CT-rich Low_complexity Low_complexity 3 122 0 24 77 0 0 chr4 135379326 135379378 -48909284 + AT_rich Low_complexity Low_complexity 1 52 0 225 380 0 0 chr4 135379933 135380025 -48908637 + L2 LINE L2 1872 1963 -1351 1173 341 88 42 chr4 135380045 135381147 -48907515 + L2 LINE L2 2156 3313 0 212 245 0 19 chr4 135382533 135382586 -48906076 + GA-rich Low_complexity Low_complexity 3 54 0 233 317 81 32 chr4 135384089 135384310 -48904352 - MLT1K LTR MaLR -8 580 349 294 290 25 43 chr4 135384386 135384548 -48904114 - L2 LINE L2 -39 3274 3116 274 223 11 64 chr4 135384605 135384699 -48903963 - L2 LINE L2 -108 3205 3117 556 123 9 19 chr4 135385973 135386061 -48902601 + (TTCC)n Simple_repeat Simple_repeat 2 90 -16 1850 133 72 31 chr4 135386061 135386421 -48902241 - THE1C LTR MaLR 0 375 1 556 123 9 19 chr4 135386421 135386438 -48902224 + (TTCC)n Simple_repeat Simple_repeat 90 106 0 337 181 169 0 chr4 135386709 135386792 -48901870 - MLT1J2 LTR MaLR -274 176 80 2300 58 3 51 chr4 135386826 135387139 -48901523 - AluY SINE Alu -13 298 1 246 338 138 60 chr4 135387250 135387814 -48900848 + L2 LINE L2 2682 3272 0 498 73 12 37 chr4 135387912 135387994 -48900668 + L1P3 LINE L1 5742 5821 -333 381 216 0 0 chr4 135388164 135388252 -48900410 + (CATATA)n Simple_repeat Simple_repeat 3 90 0 215 250 155 36 chr4 135389304 135389388 -48899274 + L2 LINE L2 3173 3266 -6 238 325 26 0 chr4 135389413 135389490 -48899172 + MER97c DNA MER1_type? 9 87 -1003 34 55 0 0 chr4 135389635 135389690 -48898972 + AT_rich Low_complexity Low_complexity 1 55 0 352 231 43 102 chr4 135389721 135389746 -48898916 + MER97c DNA MER1_type? 830 855 -235 2428 66 0 7 chr4 135389746 135390051 -48898611 - AluY SINE Alu -8 303 1 352 231 43 102 chr4 135390051 135390280 -48898382 + MER97c DNA MER1_type? 855 1069 -21 21 36 0 0 chr4 135390335 135390363 -48898299 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr4 135390655 135390685 -48897977 + AT_rich Low_complexity Low_complexity 1 30 0 315 284 0 0 chr4 135390699 135390794 -48897868 + MIR SINE MIR 112 206 -56 24 32 0 0 chr4 135394036 135394067 -48894595 + AT_rich Low_complexity Low_complexity 1 31 0 774 284 5 14 chr4 135396197 135396408 -48892254 + MIR SINE MIR 6 214 -48 261 191 16 32 chr4 135396724 135396787 -48891875 + LTR40a LTR ERVL 206 267 -252 227 360 82 7 chr4 135396845 135396992 -48891670 - MIR SINE MIR -26 236 79 353 313 118 3 chr4 135397620 135397843 -48890819 + MIR SINE MIR 11 256 -6 21 0 0 0 chr4 135397843 135397864 -48890798 + AT_rich Low_complexity Low_complexity 1 21 0 447 312 50 0 chr4 135397864 135398005 -48890657 - MIR SINE MIR -71 191 44 354 23 0 0 chr4 135398992 135399035 -48889627 + (CA)n Simple_repeat Simple_repeat 1 43 0 307 253 13 0 chr4 135399593 135399668 -48888994 - MIR SINE MIR -4 258 183 246 32 0 0 chr4 135399765 135399796 -48888866 + (GA)n Simple_repeat Simple_repeat 2 32 0 450 393 25 22 chr4 135400245 135400606 -48888056 + L2 LINE L2 1190 1551 -1763 2441 78 0 0 chr4 135400716 135401025 -48887637 - AluSc SINE Alu 0 309 1 480 346 23 14 chr4 135401341 135401558 -48887104 + MLT1H1 LTR MaLR 337 555 0 335 198 66 0 chr4 135401663 135401784 -48886878 + (TA)n Simple_repeat Simple_repeat 2 130 0 24 32 0 0 chr4 135403276 135403307 -48885355 + AT_rich Low_complexity Low_complexity 1 31 0 1022 26 0 0 chr4 135404203 135404320 -48884342 + AluY SINE Alu 181 297 -14 462 48 0 0 chr4 135408198 135408260 -48880402 + L1PA6 LINE L1 6089 6150 -4 3017 14 3 0 chr4 135408261 135408610 -48880052 + L1PA2 LINE L1 5800 6149 -6 23 0 0 0 chr4 135409256 135409279 -48879383 + AT_rich Low_complexity Low_complexity 1 23 0 291 248 48 12 chr4 135409731 135409816 -48878846 - MIR SINE MIR -61 147 64 280 256 99 41 chr4 135412582 135412703 -48875959 - MLT1J LTR MaLR -6 505 378 208 113 28 70 chr4 135413101 135413172 -48875490 + (TAAA)n Simple_repeat Simple_repeat 2 69 0 285 358 62 11 chr4 135413300 135413476 -48875186 + MLT1I LTR MaLR 36 220 -189 314 200 3 75 chr4 135413654 135413736 -48874926 - L1M3de LINE L1 -5219 672 337 227 234 64 50 chr4 135413832 135413973 -48874689 - HAL1b LINE L1 -1056 292 150 454 252 78 89 chr4 135415108 135415544 -48873118 - L1MEd LINE L1 -4872 1247 817 246 95 0 0 chr4 135415574 135415616 -48873046 + (TA)n Simple_repeat Simple_repeat 2 43 0 180 226 0 0 chr4 135416172 135416203 -48872459 + MER5B DNA MER1_type 14 44 -134 345 257 10 10 chr4 135416215 135416316 -48872346 - L1ME3A LINE L1 -5 6165 6065 23 0 0 0 chr4 135416461 135416484 -48872178 + AT_rich Low_complexity Low_complexity 1 23 0 428 299 149 7 chr4 135417503 135417657 -48871005 + MER5B DNA MER1_type 2 177 -1 21 0 0 0 chr4 135417926 135417947 -48870715 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 135418267 135418296 -48870366 + AT_rich Low_complexity Low_complexity 1 29 0 206 318 127 8 chr4 135418396 135418522 -48870140 + MIR SINE MIR 47 187 -75 24 53 0 0 chr4 135418585 135418623 -48870039 + AT_rich Low_complexity Low_complexity 1 38 0 1506 208 0 7 chr4 135418679 135418972 -48869690 + AluJo SINE Alu 1 291 -21 626 293 127 85 chr4 135418994 135419728 -48868934 + L2 LINE L2 2557 3312 -1 1106 259 109 30 chr4 135419790 135420298 -48868364 - MLT1G1 LTR MaLR 0 588 1 21 0 0 0 chr4 135422126 135422147 -48866515 + AT_rich Low_complexity Low_complexity 1 21 0 569 308 63 11 chr4 135422977 135423306 -48865356 - MLT1G LTR MaLR -162 380 31 641 345 22 0 chr4 135423705 135423983 -48864679 - ERVL LTR ERVL -1711 4053 3770 1957 88 4 0 chr4 135424219 135424493 -48864169 - L1PA8 LINE L1 -11 6161 5887 692 353 29 15 chr4 135424616 135424959 -48863703 - ERVL LTR ERVL -2395 3259 2912 1184 327 86 12 chr4 135425247 135425903 -48862759 - ERVL LTR ERVL -2438 2558 1891 2419 141 36 14 chr4 135426419 135426838 -48861824 - MSTC LTR MaLR 0 428 1 250 163 51 0 chr4 135427115 135427213 -48861449 + (TA)n Simple_repeat Simple_repeat 2 104 0 2151 122 0 0 chr4 135428265 135428568 -48860094 - AluSg SINE Alu -7 303 1 24 53 0 0 chr4 135429017 135429055 -48859607 + AT_rich Low_complexity Low_complexity 1 38 0 2207 97 0 10 chr4 135429286 135429594 -48859068 - AluSg SINE Alu -5 305 1 41 0 0 0 chr4 135430339 135430380 -48858282 + AT_rich Low_complexity Low_complexity 1 41 0 247 276 0 0 chr4 135430425 135430483 -48858179 + (CATATA)n Simple_repeat Simple_repeat 5 62 0 207 167 0 0 chr4 135430759 135430801 -48857861 + T-rich Low_complexity Low_complexity 1 42 0 601 271 62 36 chr4 135431776 135432001 -48856661 + MIR SINE MIR 28 258 -4 23 68 0 0 chr4 135433527 135433571 -48855091 + AT_rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chr4 135433720 135433750 -48854912 + AT_rich Low_complexity Low_complexity 1 30 0 26 64 0 0 chr4 135433964 135434011 -48854651 + AT_rich Low_complexity Low_complexity 1 47 0 317 394 52 4 chr4 135434919 135435150 -48853512 + ERVL LTR ERVL 4457 4698 -1066 238 365 56 0 chr4 135435182 135435289 -48853373 + LTR16C LTR ERVL 4 116 -375 369 280 51 0 chr4 135435448 135435566 -48853096 + LTR16C LTR ERVL 337 460 -31 187 29 0 59 chr4 135435970 135436004 -48852658 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 456 263 63 17 chr4 135437423 135437598 -48851064 + MIR SINE MIR 68 250 -12 330 369 52 7 chr4 135438631 135438902 -48849760 + L1M4 LINE L1 2269 2551 -3595 229 328 40 48 chr4 135439706 135439831 -48848831 - L2 LINE L2 -18 3295 3172 198 0 0 0 chr4 135440103 135440125 -48848537 + (CAGAT)n Simple_repeat Simple_repeat 2 23 0 26 30 0 0 chr4 135440204 135440237 -48848425 + AT_rich Low_complexity Low_complexity 1 33 0 236 365 59 24 chr4 135440377 135440632 -48848030 - L2 LINE L2 -798 2516 2253 234 335 63 77 chr4 135440979 135441266 -48847396 + L2 LINE L2 2922 3204 -109 363 309 90 29 chr4 135441313 135441691 -48846971 - L1M4 LINE L1 -2322 3824 3424 462 266 121 41 chr4 135441925 135442290 -48846372 - L1M4 LINE L1 -3001 3145 2752 638 152 80 0 chr4 135442997 135443122 -48845540 - L1PA15 LINE L1 -7 6158 6024 292 333 55 30 chr4 135443193 135443358 -48845304 + LTR16B LTR ERVL 129 297 -167 1728 211 12 18 chr4 135443361 135443703 -48844959 + MLT1B LTR MaLR 3 342 -48 288 203 0 40 chr4 135443723 135443797 -48844865 - MLT1D LTR MaLR -185 320 250 457 223 0 58 chr4 135443882 135443985 -48844677 - MLT1D LTR MaLR -408 97 1 240 82 118 0 chr4 135444094 135444179 -48844483 + (TA)n Simple_repeat Simple_repeat 1 95 0 27 0 0 0 chr4 135444963 135444990 -48843672 + AT_rich Low_complexity Low_complexity 1 27 0 1827 181 0 0 chr4 135445740 135446038 -48842624 + AluSx SINE Alu 1 298 -14 1763 15 0 10 chr4 135446038 135446240 -48842422 + AluYa5 SINE Alu 107 306 -5 23 0 0 0 chr4 135446436 135446459 -48842203 + AT_rich Low_complexity Low_complexity 1 23 0 253 164 27 0 chr4 135446467 135446540 -48842122 + (TA)n Simple_repeat Simple_repeat 1 75 0 279 286 41 82 chr4 135447966 135448137 -48840525 + MIR SINE MIR 77 240 -22 328 168 52 39 chr4 135448232 135448355 -48840307 - L1MA4 LINE L1 -3 6297 6158 1658 162 0 31 chr4 135448361 135448651 -48840011 - AluJb SINE Alu -27 285 5 7936 195 20 27 chr4 135448693 135450496 -48838166 - L1 LINE L1 -867 5461 3671 1451 186 11 2 chr4 135450483 135451443 -48837219 - L1 LINE L1 -4327 1001 1 * 246 393 32 5 chr4 135451736 135451922 -48836740 + MLT1K LTR MaLR 73 263 -325 200 318 0 0 chr4 135452209 135452272 -48836390 + (CA)n Simple_repeat Simple_repeat 2 64 0 223 389 106 5 chr4 135452646 135452854 -48835808 - MIR SINE MIR 0 262 34 183 59 59 29 chr4 135453140 135453174 -48835488 + MIR SINE MIR 110 144 -118 21 0 0 0 chr4 135454260 135454281 -48834381 + AT_rich Low_complexity Low_complexity 1 21 0 288 259 45 96 chr4 135456155 135456308 -48832354 - MLT1J LTR MaLR -274 237 51 1236 280 15 15 chr4 135456968 135457248 -48831414 - MER63C DNA MER1_type -555 505 223 2490 169 38 22 chr4 135457248 135457782 -48830880 + MER34 LTR ERV1 1 542 0 1236 280 15 15 chr4 135457782 135457897 -48830765 - MER63C DNA MER1_type -836 224 110 760 164 34 0 chr4 135457898 135458044 -48830618 - L1MC2 LINE L1 -118 6226 6076 429 227 27 67 chr4 135458110 135458260 -48830402 + L2 LINE L2 3162 3305 -8 24 32 0 0 chr4 135458416 135458447 -48830215 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 135458654 135458675 -48829987 + AT_rich Low_complexity Low_complexity 1 21 0 248 380 104 10 chr4 135459382 135459574 -48829088 - MER90 LTR ERV1 -15 560 351 337 118 0 26 chr4 135459588 135459664 -48828998 + (TG)n Simple_repeat Simple_repeat 1 74 0 386 179 12 142 chr4 135459750 135459912 -48828750 - MER90 LTR ERV1 -384 191 51 2067 112 51 0 chr4 135460417 135460711 -48827951 - AluSg SINE Alu -1 309 1 496 340 61 32 chr4 135461959 135462271 -48826391 - MER110-int LTR ERV1 -1803 2844 2524 368 155 0 175 chr4 135462298 135462401 -48826261 + MER97a DNA MER1_type? 134 218 -676 1174 177 14 5 chr4 135462423 135462632 -48826030 + MER2 DNA MER2_type 1 211 -134 192 40 0 0 chr4 135462667 135462692 -48825970 + (TG)n Simple_repeat Simple_repeat 2 26 0 352 238 0 0 chr4 135462696 135462759 -48825903 + MER2 DNA MER2_type 283 345 0 7212 49 0 0 chr4 135463975 135464970 -48823692 - L1PA5 LINE L1 -4 6150 5157 255 305 34 25 chr4 135465177 135465295 -48823367 - MER110-int LTR ERV1 -4524 2277 2159 188 284 32 42 chr4 135465381 135465476 -48823186 + L2 LINE L2 1924 2017 -1297 419 109 16 0 chr4 135466038 135466102 -48822560 + MSTD LTR MaLR 20 84 -312 413 295 66 0 chr4 135466757 135466879 -48821783 - L2 LINE L2 -2 3311 3182 21 0 0 0 chr4 135467510 135467531 -48821131 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 135468938 135468959 -48819703 + AT_rich Low_complexity Low_complexity 1 21 0 584 304 36 10 chr4 135470137 135470446 -48818216 - L1MEc LINE L1 -3459 2756 2440 848 262 20 0 chr4 135470446 135470648 -48818014 - MER82 DNA MER2_type -2 651 446 249 352 62 17 chr4 135470672 135470851 -48817811 + MIR SINE MIR 2 188 -74 225 0 0 0 chr4 135470870 135470895 -48817767 + (TG)n Simple_repeat Simple_repeat 2 26 0 394 212 35 0 chr4 135470904 135470989 -48817673 - MER82 DNA MER2_type -565 88 1 824 253 63 97 chr4 135470990 135471140 -48817522 - L1MEc LINE L1 -3914 2482 2329 241 222 0 0 chr4 135471140 135471194 -48817468 + CT-rich Low_complexity Low_complexity 2 55 0 824 253 63 97 chr4 135471194 135471652 -48817010 - L1MEc LINE L1 -4067 2329 1869 1377 201 0 87 chr4 135471652 135471998 -48816664 - AluJo SINE Alu 0 319 1 824 253 63 97 chr4 135471998 135472443 -48816219 - L1MEc LINE L1 -4527 1869 1411 626 165 19 0 chr4 135472464 135472567 -48816095 - U6 snRNA snRNA -2 105 1 1539 175 19 16 chr4 135472636 135472956 -48815706 - L1MA3 LINE L1 0 6305 5985 1658 182 12 12 chr4 135472986 135473316 -48815346 - L1 LINE L1 -2293 5272 4943 3955 153 37 14 chr4 135473318 135474013 -48814649 - MER50 LTR ERV1 -23 711 1 10449 213 47 7 chr4 135474018 135478038 -48810624 - L1 LINE L1 -2626 4939 107 5142 190 33 16 chr4 135478137 135480278 -48808384 + L1PA16 LINE L1 3978 6153 -13 27 0 0 0 chr4 135480278 135480305 -48808357 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr4 135481108 135481130 -48807532 + AT_rich Low_complexity Low_complexity 1 22 0 2199 104 3 3 chr4 135481164 135481461 -48807201 + AluSg SINE Alu 1 297 -13 314 236 56 0 chr4 135481480 135481552 -48807110 - L2 LINE L2 -2 3311 3236 21 95 0 0 chr4 135481730 135481793 -48806869 + AT_rich Low_complexity Low_complexity 1 63 0 715 321 168 21 chr4 135481812 135482788 -48805874 - L2 LINE L2 -171 3142 2079 25 0 0 0 chr4 135484125 135484150 -48804512 + AT_rich Low_complexity Low_complexity 1 25 0 31 0 0 0 chr4 135485050 135485081 -48803581 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr4 135485869 135485894 -48802768 + AT_rich Low_complexity Low_complexity 1 25 0 288 382 80 34 chr4 135486274 135486751 -48801911 - L2 LINE L2 -5 3308 2810 183 388 84 28 chr4 135486793 135487007 -48801655 - L2 LINE L2 -1401 1913 1688 1010 225 123 45 chr4 135487560 135487934 -48800728 - MLT1C LTR MaLR -64 403 1 23 33 0 0 chr4 135487950 135487980 -48800682 + AT_rich Low_complexity Low_complexity 1 30 0 1556 208 23 6 chr4 135488282 135488624 -48800038 + MER7A DNA MER2_type 1 346 0 1852 143 7 3 chr4 135489170 135489456 -48799206 + AluSx SINE Alu 21 307 -5 710 223 78 5 chr4 135489663 135489856 -48798806 - MER3 DNA MER1_type -1 208 2 330 97 0 42 chr4 135490354 135490426 -48798236 + (TA)n Simple_repeat Simple_repeat 1 69 0 2175 121 3 0 chr4 135490431 135490737 -48797925 + AluY SINE Alu 1 307 -4 22 35 0 0 chr4 135491093 135491122 -48797540 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 135491216 135491238 -48797424 + AT_rich Low_complexity Low_complexity 1 22 0 298 290 80 22 chr4 135491389 135491527 -48797135 + MIR SINE MIR 71 216 -46 191 328 0 0 chr4 135492420 135492484 -48796178 - MIR SINE MIR -148 114 51 666 298 34 54 chr4 135492498 135492907 -48795755 - L1MC4a LINE L1 -1873 5935 5535 3071 218 54 44 chr4 135492918 135494256 -48794406 - L1MB7 LINE L1 -16 6168 4823 243 213 55 79 chr4 135494278 135494442 -48794220 - L1MC4a LINE L1 -2376 5432 5273 26 74 0 0 chr4 135495620 135495674 -48792988 + AT_rich Low_complexity Low_complexity 1 54 0 3266 174 17 2 chr4 135495888 135496484 -48792178 - L1MC1 LINE L1 -8 6325 5721 2065 99 3 30 chr4 135496735 135497038 -48791624 - AluY SINE Alu -16 295 1 21 0 0 0 chr4 135497233 135497254 -48791408 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 135497517 135497539 -48791123 + AT_rich Low_complexity Low_complexity 1 22 0 1652 170 26 35 chr4 135498309 135498621 -48790041 - MER1B DNA MER1_type 0 339 31 313 205 36 18 chr4 135498715 135498827 -48789835 + (TA)n Simple_repeat Simple_repeat 1 114 0 21 0 0 0 chr4 135499624 135499645 -48789017 + AT_rich Low_complexity Low_complexity 1 21 0 10439 220 86 53 chr4 135500783 135507863 -48780799 + L1MA4 LINE L1 1 7352 -10 22 35 0 0 chr4 135510735 135510764 -48777898 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 135511823 135511851 -48776811 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr4 135511917 135511943 -48776719 + AT_rich Low_complexity Low_complexity 1 26 0 23 54 0 0 chr4 135513119 135513156 -48775506 + AT_rich Low_complexity Low_complexity 1 37 0 953 120 10 26 chr4 135513276 135513991 -48774671 - HSATII Satellite Satellite -9 703 1 673 155 5 5 chr4 135514002 135514206 -48774456 - HSATII Satellite Satellite -1 204 1 426 174 22 7 chr4 135514217 135514355 -48774307 - HSATII Satellite Satellite -27 143 4 6732 81 6 2 chr4 135514455 135515336 -48773326 + HERVL-A1 LTR ERVL 4771 5654 0 2889 101 10 0 chr4 135515336 135515732 -48772930 + MLT2A1 LTR ERVL 1 400 -44 353 250 0 22 chr4 135515750 135515842 -48772820 - L1MC4 LINE L1 -1339 6703 6614 308 318 0 0 chr4 135515766 135515851 -48772811 + L1MC4 LINE L1 6614 6698 -1344 * 287 98 78 0 chr4 135515851 135515902 -48772760 + MLT2A2 LTR ERVL 399 453 0 735 140 0 0 chr4 135515983 135516090 -48772572 + AluJo/FLAM SINE Alu 2 108 -204 1092 105 0 0 chr4 135516090 135516233 -48772429 + AluSg/x SINE Alu 157 299 -13 14230 93 9 1 chr4 135516921 135518828 -48769834 - HERVK22 LTR ERVK -607 6230 4308 902 169 142 9 chr4 135518856 135519075 -48769587 - LTR22 LTR ERVK -261 248 1 3935 112 16 2 chr4 135519081 135519653 -48769009 - HERVK22 LTR ERVK -2530 4307 3728 280 200 0 0 chr4 135520019 135520064 -48768598 + FRAM/FAM SINE Alu 1 44 -122 914 330 26 6 chr4 135520134 135520483 -48768179 + ERVL LTR ERVL 4256 4611 -1153 335 222 82 21 chr4 135520522 135520624 -48768038 + ERVL LTR ERVL 4532 4632 -1022 605 14 14 0 chr4 135520684 135520758 -48767904 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 223 231 19 0 chr4 135520760 135520812 -48767850 + (TA)n Simple_repeat Simple_repeat 1 53 0 897 339 33 16 chr4 135520941 135521392 -48767270 + ERVL LTR ERVL 4886 5344 -420 22 35 0 0 chr4 135521479 135521508 -48767154 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr4 135521628 135521663 -48766999 + AT_rich Low_complexity Low_complexity 1 35 0 2165 83 0 83 chr4 135522117 135522444 -48766218 + AluY SINE Alu 3 302 -9 3571 113 0 29 chr4 135523510 135524031 -48764631 + HERVK22 LTR ERVK 6332 6837 0 1705 217 91 23 chr4 135524033 135524504 -48764158 + LTR22 LTR ERVK 3 505 -4 20584 92 12 5 chr4 135524507 135527249 -48761413 + HERVL LTR ERVL 1509 4269 -1385 2128 104 0 31 chr4 135527484 135527801 -48760861 + AluY SINE Alu 1 307 -4 266 254 164 0 chr4 135527954 135528021 -48760641 - L2 LINE L2 -40 3273 3196 1481 274 35 26 chr4 135528478 135528971 -48759691 - MLT1D LTR MaLR -8 497 1 27 49 0 0 chr4 135529018 135529059 -48759603 + AT_rich Low_complexity Low_complexity 1 41 0 1822 125 22 68 chr4 135529092 135529403 -48759259 - AluSx SINE Alu -15 297 1 1000 128 0 0 chr4 135529403 135529536 -48759126 - AluSc SINE Alu -176 133 1 453 245 50 15 chr4 135530855 135531006 -48757656 + MLT1C LTR MaLR 333 467 0 1402 143 0 5 chr4 135531109 135531318 -48757344 - AluSc SINE Alu -101 208 1 220 388 113 6 chr4 135534063 135534223 -48754439 - MER5B DNA MER1_type 0 178 2 871 159 13 13 chr4 135534809 135534960 -48753702 - HERVK22 LTR ERVK -6083 754 604 5672 161 109 58 chr4 135534963 135536487 -48752175 - pTR5 LTR ERV1 0 2438 741 587 153 0 0 chr4 135536485 135536583 -48752079 - HERVK22 LTR ERVK -6230 607 510 * 1452 208 105 46 chr4 135536584 135537061 -48751601 - LTR22 LTR ERVK -4 505 1 10880 90 31 0 chr4 135537061 135538531 -48750131 - HERVL-A1 LTR ERVL -4139 1515 1 3401 68 9 5 chr4 135538532 135538973 -48749689 - MLT2A1 LTR ERVL -1 443 1 22 0 0 0 chr4 135540076 135540098 -48748564 + AT_rich Low_complexity Low_complexity 1 22 0 208 122 49 0 chr4 135540996 135541037 -48747625 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 198 241 19 0 chr4 135541041 135541095 -48747567 - MIR SINE MIR -24 238 184 330 295 64 40 chr4 135542839 135543051 -48745611 - MLT1H LTR MaLR -282 267 10 321 290 62 14 chr4 135543160 135543305 -48745357 + MIR SINE MIR 79 230 -32 22 0 0 0 chr4 135543464 135543486 -48745176 + AT_rich Low_complexity Low_complexity 1 22 0 2088 119 3 3 chr4 135543726 135544019 -48744643 - AluSp SINE Alu -15 298 6 315 233 0 0 chr4 135545041 135545101 -48743561 + MER6A DNA MER2_type 1 60 -545 2296 116 20 14 chr4 135546101 135546454 -48742208 - THE1A LTR MaLR 0 355 1 1002 199 58 133 chr4 135546878 135547270 -48741392 - MLT1A1 LTR MaLR 0 365 1 719 276 98 17 chr4 135547633 135548228 -48740434 + L1ME LINE L1 4902 5545 -619 23 54 0 0 chr4 135548337 135548374 -48740288 + AT_rich Low_complexity Low_complexity 1 37 0 1457 201 45 50 chr4 135548496 135548875 -48739787 + MLT1B LTR MaLR 3 379 -11 1889 199 235 51 chr4 135550279 135550908 -48737754 + LTR28 LTR ERV1 5 749 -271 298 219 0 22 chr4 135550879 135550979 -48737683 + MSTA LTR MaLR 81 193 -218 * 4079 11 0 0 chr4 135550979 135551441 -48737221 + L1PA2 LINE L1 5692 6153 -2 1150 173 100 0 chr4 135551473 135551693 -48736969 + MSTA LTR MaLR 187 428 0 2172 157 3 6 chr4 135552049 135552387 -48736275 + MER1B DNA MER1_type 1 337 0 262 283 20 20 chr4 135552554 135552653 -48736009 - MIR SINE MIR 0 262 164 792 217 108 37 chr4 135552672 135552898 -48735764 - Charlie2 DNA MER1_type -175 2687 2478 2571 127 34 12 chr4 135552898 135553315 -48735347 - MSTB LTR MaLR 0 426 1 792 217 108 37 chr4 135553315 135553516 -48735146 - Charlie2 DNA MER1_type -384 2478 2230 532 274 34 44 chr4 135553545 135553749 -48734913 - Charlie2 DNA MER1_type -2542 320 119 196 315 19 0 chr4 135554936 135554990 -48733672 - L2 LINE L2 0 3272 3218 225 0 0 0 chr4 135555048 135555073 -48733589 + (A)n Simple_repeat Simple_repeat 1 25 0 227 333 12 0 chr4 135555504 135555585 -48733077 + MIR SINE MIR 51 132 -130 24 77 0 0 chr4 135555733 135555785 -48732877 + AT_rich Low_complexity Low_complexity 1 52 0 827 227 62 100 chr4 135555989 135556560 -48732102 + MER52A LTR ERV1 666 1356 -399 246 228 0 141 chr4 135556634 135556726 -48731936 + MER52A LTR ERV1 1372 1450 -305 2351 168 62 14 chr4 135556855 135557342 -48731320 + LTR54 LTR ERV1 1 510 0 393 102 0 0 chr4 135557458 135557517 -48731145 + (CA)n Simple_repeat Simple_repeat 1 59 0 342 0 0 0 chr4 135558235 135558273 -48730389 + (CA)n Simple_repeat Simple_repeat 1 38 0 1705 165 10 20 chr4 135559879 135560182 -48728480 - LTR8 LTR ERV1 0 691 392 2187 228 41 45 chr4 135560278 135560792 -48727870 - LTR28 LTR ERV1 -71 949 438 234 238 32 0 chr4 135560825 135560888 -48727774 - LTR1 LTR ERV1 -600 185 121 657 200 90 19 chr4 135560925 135561080 -48727582 - LTR28 LTR ERV1 -854 166 1 * 1935 96 29 107 chr4 135561080 135561445 -48727217 - LTR8 LTR ERV1 -296 395 60 24319 158 14 18 chr4 135561445 135567852 -48720810 + L1HS LINE L1 2 6446 -24 261 119 0 0 chr4 135567852 135567894 -48720768 + (TAAAA)n Simple_repeat Simple_repeat 1 42 0 4046 109 2 17 chr4 135567896 135568500 -48720162 + L1PA8 LINE L1 5497 6091 -81 352 174 43 0 chr4 135568954 135569023 -48719639 - LTR8 LTR ERV1 -619 72 1 2603 190 16 39 chr4 135569226 135569795 -48718867 - MER4D LTR ERV1 0 903 348 5833 79 8 3 chr4 135570017 135570793 -48717869 - LTR17 LTR ERV1 0 780 1 1287 212 29 7 chr4 135571625 135571903 -48716759 - MER49 LTR ERV1 -637 286 3 26 50 0 0 chr4 135572989 135573029 -48715633 + AT_rich Low_complexity Low_complexity 1 40 0 538 387 93 19 chr4 135573136 135573210 -48715452 + L2 LINE L2 2565 2632 -682 3444 138 19 0 chr4 135573210 135573752 -48714910 - MER41A LTR ERV1 0 554 3 538 387 93 19 chr4 135573752 135574054 -48714608 + L2 LINE L2 2632 2969 -345 21 36 0 0 chr4 135574360 135574388 -48714274 + AT_rich Low_complexity Low_complexity 1 28 0 228 329 29 0 chr4 135574822 135574892 -48713770 - L2 LINE L2 -55 3258 3187 3014 238 56 6 chr4 135575813 135576615 -48712047 - L1MD2 LINE L1 -10 6349 5508 1555 147 75 0 chr4 135576853 135577118 -48711544 - AluSg SINE Alu -25 285 1 297 212 10 20 chr4 135577614 135577666 -48710996 + (TA)n Simple_repeat Simple_repeat 1 53 -45 2058 100 7 0 chr4 135577666 135577946 -48710716 - AluSq SINE Alu -31 282 1 297 212 10 20 chr4 135577946 135577992 -48710670 + (TA)n Simple_repeat Simple_repeat 53 98 0 1280 202 3 27 chr4 135577992 135578284 -48710378 - AluJo SINE Alu -27 285 1 278 192 0 0 chr4 135578600 135578652 -48710010 - MER117 DNA MER1_type -136 61 10 2098 114 7 3 chr4 135578952 135579260 -48709402 - AluY SINE Alu -2 309 1 5192 80 7 0 chr4 135579774 135580474 -48708188 - L1PA7 LINE L1 0 6154 5450 3413 91 9 2 chr4 135580476 135581026 -48707636 + L1ME LINE L1 4914 5466 -655 697 244 36 15 chr4 135581073 135581347 -48707315 + L1M4 LINE L1 2674 2953 -3193 2186 68 3 13 chr4 135581429 135581736 -48706926 - AluY SINE Alu -7 304 1 1510 62 0 62 chr4 135583052 135583262 -48705400 - AluY SINE Alu -114 197 1 33 43 0 0 chr4 135583310 135583357 -48705305 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr4 135584127 135584149 -48704513 + AT_rich Low_complexity Low_complexity 1 22 0 1398 181 8 27 chr4 135584725 135584985 -48703677 + AluJo SINE Alu 35 289 -23 207 344 97 20 chr4 135586311 135586506 -48702156 + L3 LINE CR1 559 768 -809 302 291 45 22 chr4 135588252 135588386 -48700276 - MLT1J2 LTR MaLR -278 169 32 180 0 0 0 chr4 135588973 135588993 -48699669 + (CATATA)n Simple_repeat Simple_repeat 4 23 0 6000 139 24 5 chr4 135589080 135590184 -48698478 + L1MA3 LINE L1 5181 6304 -1 279 328 109 8 chr4 135591308 135591427 -48697235 + MERVL LTR ERVL 3574 3704 -1781 331 280 14 84 chr4 135591491 135591634 -48697028 + MLT2E LTR ERVL 41 173 -455 227 275 29 0 chr4 135591919 135591988 -48696674 - L2 LINE L2 -205 3067 2997 267 402 12 30 chr4 135592450 135592614 -48696048 + L1MB1 LINE L1 2115 2275 -5211 599 288 48 16 chr4 135592768 135593018 -48695644 + L1MB1 LINE L1 2270 2527 -4969 1862 294 45 28 chr4 135593027 135594969 -48693693 + L1MB1 LINE L1 2404 4379 -3186 302 268 0 31 chr4 135594972 135595069 -48693593 - L1MC4 LINE L1 -1339 6703 6610 * 317 322 0 0 chr4 135594998 135595088 -48693574 + L1MC4 LINE L1 6614 6703 -1339 993 256 7 3 chr4 135595096 135595397 -48693265 + L1MB1 LINE L1 4385 4686 -2879 487 326 109 32 chr4 135595400 135595875 -48692787 + L1MA6 LINE L1 1216 1727 -5769 2064 156 14 19 chr4 135595939 135596305 -48692357 - THE1B LTR MaLR 0 364 1 10495 218 39 60 chr4 135596408 135597046 -48691616 + L1MA6 LINE L1 2259 2909 -4810 1541 192 13 23 chr4 135597046 135597353 -48691309 + AluJo SINE Alu 1 304 -8 10495 218 39 60 chr4 135597353 135600278 -48688384 + L1MA6 LINE L1 2909 5684 -2035 1758 152 3 36 chr4 135600278 135600642 -48688020 + AluSx SINE Alu 3 312 0 10495 218 39 60 chr4 135600642 135602299 -48686363 + L1MA6 LINE L1 5684 7375 -344 1347 208 176 2 chr4 135602306 135602709 -48685953 + L1MB1 LINE L1 5966 6438 -1127 2510 159 41 48 chr4 135602709 135602908 -48685754 + L1MB1 LINE L1 7008 7207 -380 1844 150 10 7 chr4 135602908 135603214 -48685448 + AluSx SINE Alu 1 307 -5 2510 159 41 48 chr4 135603214 135603598 -48685064 + L1MB1 LINE L1 7207 7587 0 27 73 0 0 chr4 135603600 135603655 -48685007 + AT_rich Low_complexity Low_complexity 1 55 0 1984 134 6 6 chr4 135604529 135604842 -48683820 - AluSq SINE Alu 0 313 1 42255 36 24 1 chr4 135604941 135610955 -48677707 + L1PA3 LINE L1 1 6154 -1 28 48 0 0 chr4 135611394 135611436 -48677226 + AT_rich Low_complexity Low_complexity 1 42 0 216 368 15 78 chr4 135612732 135612936 -48675726 + MIR3 SINE MIR 16 206 -2 208 190 35 17 chr4 135614090 135614148 -48674514 + GA-rich Low_complexity Low_complexity 2 60 0 21 0 0 0 chr4 135615445 135615466 -48673196 + AT_rich Low_complexity Low_complexity 1 21 0 333 263 65 1 chr4 135616015 135616127 -48672535 + MLT1H1 LTR MaLR 437 549 0 272 280 158 39 chr4 135616138 135616474 -48672188 + HAL1b LINE L1 516 891 -457 330 292 83 5 chr4 135616496 135616688 -48671974 + HAL1b LINE L1 944 1150 -198 715 216 18 35 chr4 135616733 135616904 -48671758 - MER3 DNA MER1_type -1 208 41 352 136 106 0 chr4 135617135 135617201 -48671461 + L1MC2 LINE L1 6260 6332 -12 21 71 0 0 chr4 135618362 135618404 -48670258 + AT_rich Low_complexity Low_complexity 1 42 0 1927 103 11 11 chr4 135621604 135621885 -48666777 + AluSx SINE Alu 3 283 -29 441 0 0 0 chr4 135621888 135621937 -48666725 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 375 290 19 52 chr4 135621946 135622101 -48666561 - MIR SINE MIR -104 158 9 209 367 83 37 chr4 135622585 135622694 -48665968 - L2 LINE L2 -22 3250 3137 222 371 67 0 chr4 135623477 135623582 -48665080 - MIR SINE MIR -117 145 34 258 154 96 0 chr4 135623631 135623683 -48664979 - MER92C LTR ERV1 -3 551 495 524 249 0 129 chr4 135623745 135623962 -48664700 - MER92B LTR ERV1 -365 189 1 22 0 0 0 chr4 135624125 135624147 -48664515 + AT_rich Low_complexity Low_complexity 1 22 0 452 376 6 12 chr4 135625019 135625181 -48663481 + MIR SINE MIR 15 175 -87 30355 126 16 61 chr4 135625378 135631824 -48656838 - L1PA3 LINE L1 -1 6154 7 422 244 78 17 chr4 135631829 135631944 -48656718 - MIR SINE MIR -31 231 110 435 343 11 6 chr4 135632983 135633158 -48655504 - MIR SINE MIR -57 205 30 340 260 42 10 chr4 135634815 135634911 -48653751 + L1MC4 LINE L1 6604 6702 -1340 343 351 83 0 chr4 135635361 135635566 -48653096 - L2 LINE L2 0 3313 3092 310 336 24 14 chr4 135635688 135635838 -48652824 - L2 LINE L2 -344 2928 2779 291 85 0 0 chr4 135636017 135636064 -48652598 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 182 402 52 0 chr4 135636704 135636801 -48651861 + MIR3 SINE MIR 4 105 -103 338 288 18 96 chr4 135637332 135637561 -48651101 + HAL1 LINE L1 2297 2507 0 325 267 56 31 chr4 135637729 135637890 -48650772 - MER103 DNA DNA 0 166 2 2233 230 42 16 chr4 135638551 135639165 -48649497 - L1MB7 LINE L1 -9 6175 5546 250 286 12 88 chr4 135639249 135639420 -48649242 - L1M4 LINE L1 -6288 254 97 23 0 0 0 chr4 135639905 135639928 -48648734 + AT_rich Low_complexity Low_complexity 1 23 0 23 86 0 0 chr4 135640734 135640792 -48647870 + AT_rich Low_complexity Low_complexity 1 58 0 270 283 71 35 chr4 135640952 135641065 -48647597 + L2 LINE L2 3197 3313 0 28 29 0 0 chr4 135641284 135641319 -48647343 + AT_rich Low_complexity Low_complexity 1 35 0 22 70 0 0 chr4 135641623 135641666 -48646996 + AT_rich Low_complexity Low_complexity 1 43 0 193 75 50 25 chr4 135641741 135641781 -48646881 + CT-rich Low_complexity Low_complexity 4 44 0 1315 206 106 0 chr4 135641784 135642066 -48646596 - AluSx SINE Alu 0 312 1 255 173 53 0 chr4 135642275 135642350 -48646312 + (TA)n Simple_repeat Simple_repeat 1 79 0 467 291 104 64 chr4 135642749 135643076 -48645586 + MLT1H LTR MaLR 194 533 -16 3246 213 109 85 chr4 135643128 135644152 -48644510 - L1MB7 LINE L1 0 6184 5027 504 191 0 0 chr4 135644152 135644236 -48644426 - AluSg/x SINE Alu -22 290 207 3246 213 109 85 chr4 135644236 135644628 -48644034 - L1MB7 LINE L1 -1157 5027 4646 25 0 0 0 chr4 135645063 135645088 -48643574 + AT_rich Low_complexity Low_complexity 1 25 0 2048 125 7 3 chr4 135645915 135646219 -48642443 + AluSc SINE Alu 1 305 -4 1031 235 32 20 chr4 135646477 135646921 -48641741 - L1MB7 LINE L1 -620 5554 5111 21 57 0 0 chr4 135647739 135647774 -48640888 + AT_rich Low_complexity Low_complexity 1 35 0 806 303 32 62 chr4 135648389 135648854 -48639808 - MLT1J LTR MaLR -33 478 28 302 207 0 0 chr4 135648923 135648981 -48639681 - MSTA LTR MaLR 0 428 371 658 112 28 84 chr4 135649081 135649224 -48639438 - THE1C LTR MaLR -240 135 1 24 32 0 0 chr4 135649574 135649605 -48639057 + AT_rich Low_complexity Low_complexity 1 31 0 1626 175 40 61 chr4 135649761 135650106 -48638556 + MLT1B LTR MaLR 2 340 -50 186 43 0 0 chr4 135650106 135650129 -48638533 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1626 175 40 61 chr4 135650129 135650161 -48638501 + MLT1B LTR MaLR 340 371 -19 2263 111 7 0 chr4 135650345 135650652 -48638010 - AluSc SINE Alu 0 309 1 708 216 60 18 chr4 135650915 135651082 -48637580 - MER45A DNA AcHobo 0 178 5 180 152 0 0 chr4 135651268 135651301 -48637361 + T-rich Low_complexity Low_complexity 1 33 0 1625 157 4 8 chr4 135651359 135651626 -48637036 - AluJb SINE Alu -33 279 14 21 36 0 0 chr4 135652328 135652356 -48636306 + AT_rich Low_complexity Low_complexity 1 28 0 296 263 166 58 chr4 135652594 135652799 -48635863 - MLT1L LTR MaLR -210 405 179 236 341 178 0 chr4 135652924 135653138 -48635524 - MLT1I LTR MaLR -98 311 60 13566 159 16 30 chr4 135653226 135653362 -48635300 - Tigger1 DNA MER2_type -4 2414 2278 2186 117 0 0 chr4 135653362 135653660 -48635002 - AluSg SINE Alu -12 298 1 13566 159 16 30 chr4 135653660 135655321 -48633341 - Tigger1 DNA MER2_type -140 2278 595 291 54 0 0 chr4 135655321 135655358 -48633304 + (CA)n Simple_repeat Simple_repeat 2 38 0 13566 159 16 30 chr4 135655358 135655387 -48633275 - Tigger1 DNA MER2_type -1823 595 567 3834 150 0 0 chr4 135655387 135656001 -48632661 - L1PA15 LINE L1 0 6165 5552 13566 159 16 30 chr4 135656001 135656621 -48632041 - Tigger1 DNA MER2_type -1851 567 1 1261 163 13 9 chr4 135659223 135659456 -48629206 + L1PA15 LINE L1 5932 6165 0 655 289 105 13 chr4 135659608 135659989 -48628673 + L1ME LINE L1 4631 5046 -1100 397 271 145 0 chr4 135660191 135660357 -48628305 + L1ME LINE L1 5394 5586 -576 1676 206 46 59 chr4 135660390 135660418 -48628244 + L1ME3A LINE L1 4707 4734 -1585 2122 127 16 44 chr4 135660418 135660804 -48627858 - THE1C LTR MaLR 0 375 1 1676 206 46 59 chr4 135660804 135661608 -48627054 + L1ME3A LINE L1 4734 5524 -795 269 316 103 58 chr4 135661802 135662093 -48626569 + L2 LINE L2 1719 2022 -1292 495 303 84 0 chr4 135662336 135662587 -48626075 + L1ME3A LINE L1 5633 5904 -266 2114 144 123 5 chr4 135663042 135663425 -48625237 - MSTA LTR MaLR 0 428 1 26 50 0 0 chr4 135664799 135664839 -48623823 + AT_rich Low_complexity Low_complexity 1 40 0 1595 175 110 42 chr4 135664841 135665266 -48623396 - MLT1C LTR MaLR -2 652 7 24 67 0 0 chr4 135665888 135665933 -48622729 + AT_rich Low_complexity Low_complexity 1 45 0 1910 105 54 0 chr4 135666077 135666371 -48622291 - AluSg SINE Alu 0 310 1 24 32 0 0 chr4 135668778 135668809 -48619853 + AT_rich Low_complexity Low_complexity 1 31 0 23 86 0 0 chr4 135669398 135669456 -48619206 + AT_rich Low_complexity Low_complexity 1 58 0 21 57 0 0 chr4 135669800 135669835 -48618827 + AT_rich Low_complexity Low_complexity 1 35 0 240 35 0 0 chr4 135670778 135670807 -48617855 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 225 0 0 0 chr4 135671765 135671790 -48616872 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 208 176 0 20 chr4 135672128 135672179 -48616483 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 2217 109 3 0 chr4 135672875 135673186 -48615476 + AluSx SINE Alu 1 312 0 258 32 0 0 chr4 135673394 135673425 -48615237 + (TC)n Simple_repeat Simple_repeat 2 32 0 198 0 0 0 chr4 135673424 135673446 -48615216 + (TG)n Simple_repeat Simple_repeat 1 22 0 * 252 286 31 0 chr4 135674115 135674213 -48614449 - MER112 DNA MER1_type -12 248 148 2378 54 3 3 chr4 135675131 135675429 -48613233 - AluY SINE Alu -13 298 1 545 296 65 0 chr4 135677165 135677351 -48611311 - MIR SINE MIR -1 261 64 24 32 0 0 chr4 135678457 135678488 -48610174 + AT_rich Low_complexity Low_complexity 1 31 0 206 288 98 33 chr4 135679045 135679198 -48609464 + MIR SINE MIR 98 260 -2 258 354 0 0 chr4 135679397 135679493 -48609169 - MIR SINE MIR -57 205 110 6408 125 28 3 chr4 135680141 135681200 -48607462 + L1MA1 LINE L1 5182 6267 -35 25 0 0 0 chr4 135681200 135681225 -48607437 + AT_rich Low_complexity Low_complexity 1 25 0 39 38 0 0 chr4 135681902 135681955 -48606707 + AT_rich Low_complexity Low_complexity 1 53 0 30 27 0 0 chr4 135682139 135682176 -48606486 + AT_rich Low_complexity Low_complexity 1 37 0 235 356 98 17 chr4 135682400 135682574 -48606088 - MER5A DNA MER1_type -1 188 1 10890 90 15 1 chr4 135682791 135684364 -48604298 + L1PA7 LINE L1 2915 4508 -1638 5345 56 3 0 chr4 135684364 135685044 -48603618 + L1PA7 LINE L1 5473 6154 0 232 330 36 49 chr4 135686453 135686677 -48601985 + L2 LINE L2 862 1082 -2232 25 31 0 0 chr4 135686748 135686780 -48601882 + AT_rich Low_complexity Low_complexity 1 32 0 377 305 35 46 chr4 135688906 135689080 -48599582 - L2 LINE L2 -1 3312 3141 409 165 121 45 chr4 135689099 135689232 -48599430 - MLT1C LTR MaLR -353 114 1 201 39 0 0 chr4 135689240 135689266 -48599396 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 312 318 16 23 chr4 135689458 135689587 -48599075 - L2 LINE L2 -904 2410 2283 21 57 0 0 chr4 135689603 135689638 -48599024 + AT_rich Low_complexity Low_complexity 1 35 0 25 51 0 0 chr4 135690102 135690141 -48598521 + AT_rich Low_complexity Low_complexity 1 39 0 213 349 125 10 chr4 135690765 135690957 -48597705 - MIR SINE MIR -11 251 38 26 0 0 0 chr4 135691491 135691517 -48597145 + AT_rich Low_complexity Low_complexity 1 26 0 24 67 0 0 chr4 135692154 135692199 -48596463 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr4 135692927 135692948 -48595714 + AT_rich Low_complexity Low_complexity 1 21 0 1730 184 3 3 chr4 135693085 135693395 -48595267 + AluSx SINE Alu 1 310 -2 479 126 0 23 chr4 135693395 135693482 -48595180 + (GGAGA)n Simple_repeat Simple_repeat 4 88 0 30 27 0 0 chr4 135694528 135694565 -48594097 + AT_rich Low_complexity Low_complexity 1 37 0 670 239 94 38 chr4 135694594 135694966 -48593696 - Charlie7 DNA MER1_type -651 1961 1569 397 284 34 57 chr4 135695032 135695136 -48593526 - MIR SINE MIR 0 262 162 3326 180 46 70 chr4 135695136 135696128 -48592534 + LTR5 LTR ERVK 1 969 0 397 284 34 57 chr4 135696128 135696199 -48592463 - MIR SINE MIR -100 162 91 1832 181 0 3 chr4 135696205 135696515 -48592147 - AluJb SINE Alu -3 309 1 270 148 0 0 chr4 135696553 135696607 -48592055 + L1MB3 LINE L1 6130 6183 0 6516 68 46 35 chr4 135696764 135697565 -48591097 - L1PA7 LINE L1 -2 6152 5303 2123 105 3 10 chr4 135697565 135697870 -48590792 - AluSc SINE Alu -6 303 1 6516 68 46 35 chr4 135697870 135698385 -48590277 - L1PA7 LINE L1 -851 5303 4795 25 65 0 0 chr4 135698617 135698663 -48589999 + AT_rich Low_complexity Low_complexity 1 46 0 28 61 0 0 chr4 135699090 135699139 -48589523 + AT_rich Low_complexity Low_complexity 1 49 0 347 269 97 7 chr4 135700019 135700164 -48588498 - L1ME LINE L1 -439 5682 5525 2026 92 0 72 chr4 135700686 135701029 -48587633 + AluSx SINE Alu 1 321 0 22 0 0 0 chr4 135701030 135701052 -48587610 + AT_rich Low_complexity Low_complexity 1 22 0 371 256 102 7 chr4 135701543 135701680 -48586982 - MIR SINE MIR -65 197 48 28 48 0 0 chr4 135702005 135702047 -48586615 + AT_rich Low_complexity Low_complexity 1 42 0 2257 87 0 19 chr4 135702054 135702366 -48586296 + AluY SINE Alu 3 308 -3 22 0 0 0 chr4 135702998 135703020 -48585642 + AT_rich Low_complexity Low_complexity 1 22 0 204 205 0 0 chr4 135703865 135703904 -48584758 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 71 0 0 chr4 135704342 135704384 -48584278 + AT_rich Low_complexity Low_complexity 1 42 0 186 43 0 0 chr4 135706372 135706395 -48582267 + (TG)n Simple_repeat Simple_repeat 1 23 0 22 0 0 0 chr4 135706722 135706744 -48581918 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 135707454 135707477 -48581185 + AT_rich Low_complexity Low_complexity 1 23 0 195 42 0 0 chr4 135707536 135707560 -48581102 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 196 281 62 0 chr4 135707973 135708037 -48580625 + MIR SINE MIR 120 187 -75 220 342 34 17 chr4 135708305 135708422 -48580240 + MIR SINE MIR 140 258 -4 25 65 0 0 chr4 135709046 135709092 -48579570 + AT_rich Low_complexity Low_complexity 1 46 0 392 333 50 60 chr4 135709589 135709889 -48578773 + LTR16C LTR ERVL 16 312 -179 26 0 0 0 chr4 135712264 135712290 -48576372 + AT_rich Low_complexity Low_complexity 1 26 0 412 228 79 26 chr4 135712321 135712435 -48576227 - L2 LINE L2 -3 3310 3191 2007 198 95 53 chr4 135712840 135713262 -48575400 + MLT2B2 LTR ERVL 1 404 -111 497 44 15 0 chr4 135713262 135713330 -48575332 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 2007 198 95 53 chr4 135713330 135713344 -48575318 + MLT2B2 LTR ERVL 404 416 -99 414 68 0 40 chr4 135713344 135713418 -48575244 + (TA)n Simple_repeat Simple_repeat 1 71 0 2007 198 95 53 chr4 135713418 135713474 -48575188 + MLT2B2 LTR ERVL 416 515 0 899 196 118 66 chr4 135713593 135713864 -48574798 + MLT1A1 LTR MaLR 77 361 -4 31 68 0 0 chr4 135714811 135714870 -48573792 + AT_rich Low_complexity Low_complexity 1 59 0 21 0 0 0 chr4 135716561 135716582 -48572080 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr4 135717677 135717710 -48570952 + (CA)n Simple_repeat Simple_repeat 2 34 0 189 0 0 0 chr4 135718035 135718056 -48570606 + (CCAA)n Simple_repeat Simple_repeat 2 22 0 485 256 48 101 chr4 135718177 135718332 -48570330 - MLT2C1 LTR ERVL -98 299 42 595 207 16 0 chr4 135718332 135718453 -48570209 - MLT1E3 LTR MaLR -439 185 63 485 256 48 101 chr4 135718453 135718493 -48570169 - MLT2C1 LTR ERVL -355 42 1 1219 251 67 25 chr4 135718986 135719709 -48568953 - L1M4 LINE L1 -1538 4608 3797 309 303 141 3 chr4 135719730 135720034 -48568628 + L1ME3 LINE L1 5027 5372 -774 318 267 12 0 chr4 135720075 135720161 -48568501 + L1ME3 LINE L1 5467 5553 -613 1948 124 11 7 chr4 135720181 135720463 -48568199 + AluSg SINE Alu 13 295 -15 762 263 59 22 chr4 135720599 135720919 -48567743 + L1ME3 LINE L1 5650 5981 -181 26 50 0 0 chr4 135724414 135724454 -48564208 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr4 135724615 135724636 -48564026 + AT_rich Low_complexity Low_complexity 1 21 0 1334 234 43 38 chr4 135724676 135725070 -48563592 - MSTD LTR MaLR 0 396 1 1660 224 14 6 chr4 135725167 135725529 -48563133 - MLT1A1 LTR MaLR 0 365 1 28 48 0 0 chr4 135725677 135725719 -48562943 + AT_rich Low_complexity Low_complexity 1 42 0 1367 241 21 0 chr4 135726378 135726532 -48562130 - AluJo SINE Alu -24 288 124 288 0 0 0 chr4 135726532 135726564 -48562098 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1367 241 21 0 chr4 135726564 135726691 -48561971 - AluJo SINE Alu -188 124 1 634 359 102 27 chr4 135727022 135727395 -48561267 + L1M2 LINE L1 18 418 -5537 3662 257 82 46 chr4 135727740 135729659 -48559003 + L1M2 LINE L1 397 2382 -3652 9657 191 86 21 chr4 135729663 135731471 -48557191 - Tigger1 DNA MER2_type -5 2413 426 2103 71 8 0 chr4 135731471 135731738 -48556924 - AluY SINE Alu -3 308 40 9657 191 86 21 chr4 135731738 135732194 -48556468 - Tigger1 DNA MER2_type -1992 426 1 2600 233 75 14 chr4 135732197 135733070 -48555592 + L1M2 LINE L1 2383 3308 -2726 1822 172 9 0 chr4 135733065 135733391 -48555271 + L1M2 LINE L1 5377 5705 -483 * 553 163 0 0 chr4 135733779 135733871 -48554791 - ALR/Alpha Satellite centromeric -70 101 10 2113 123 0 7 chr4 135733885 135734187 -48554475 + AluSx SINE Alu 5 304 -8 1544 226 0 7 chr4 135734482 135734787 -48553875 + AluJo SINE Alu 1 303 -9 217 368 43 8 chr4 135734869 135734986 -48553676 - MIR SINE MIR -138 124 4 316 200 13 13 chr4 135735525 135735600 -48553062 + L1MA7 LINE L1 6198 6272 -19 320 378 114 17 chr4 135735676 135736081 -48552581 + L2 LINE L2 2809 3252 -61 640 308 82 50 chr4 135736642 135737200 -48551462 + L1ME LINE L1 43 618 -5501 1596 167 30 4 chr4 135738106 135738376 -48550286 - Tigger3(Golem) DNA MER2_type -3 3026 2750 344 336 82 55 chr4 135738400 135738963 -48549699 + L1ME LINE L1 4440 5017 -1112 241 293 12 19 chr4 135739301 135739469 -48549193 + L1ME LINE L1 5477 5643 -510 1919 162 21 26 chr4 135741324 135741701 -48546961 + THE1C LTR MaLR 1 375 0 9946 133 9 28 chr4 135741731 135743320 -48545342 + THE1C-int LTR MaLR 21 1580 0 1223 184 4 9 chr4 135743320 135743548 -48545114 + THE1C LTR MaLR 1 227 -148 1931 110 34 31 chr4 135743662 135743954 -48544708 + AluY SINE Alu 2 294 -17 1130 343 111 73 chr4 135745006 135745638 -48543024 + L2 LINE L2 235 842 -2472 1661 189 7 3 chr4 135745638 135745945 -48542717 - AluJb SINE Alu -4 308 1 1130 343 111 73 chr4 135745945 135747334 -48541328 + L2 LINE L2 842 2332 -982 543 295 127 31 chr4 135747695 135748017 -48540645 + L2 LINE L2 2309 2661 -653 278 315 179 103 chr4 135748107 135748554 -48540108 + L2 LINE L2 2833 3313 0 318 309 89 25 chr4 135750382 135750740 -48537922 + L1ME3A LINE L1 5558 5935 -235 27 0 0 0 chr4 135750753 135750780 -48537882 + AT_rich Low_complexity Low_complexity 1 27 0 4950 164 9 2 chr4 135751262 135752124 -48536538 - L1MC1 LINE L1 -17 6316 5449 3623 180 5 3 chr4 135752124 135752735 -48535927 + LTR9 LTR ERV1 1 612 0 32838 137 85 68 chr4 135752752 135760605 -48528057 + HUERS-P3b LTR ERV1 17 8034 -735 1906 117 36 4 chr4 135760605 135760901 -48527761 - AluY SINE Alu 0 305 1 32838 137 85 68 chr4 135760901 135761172 -48527490 + HUERS-P3b LTR ERV1 8034 8299 -470 951 174 0 0 chr4 135761168 135761323 -48527339 + HUERS-P3b LTR ERV1 8764 8918 -1 * 3901 148 8 5 chr4 135761323 135761933 -48526729 + LTR9 LTR ERV1 1 612 0 3937 131 5 14 chr4 135762107 135762748 -48525914 - MER41B LTR ERV1 0 635 1 38 22 0 0 chr4 135762753 135762798 -48525864 + AT_rich Low_complexity Low_complexity 1 45 0 30 0 0 0 chr4 135764625 135764655 -48524007 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr4 135765057 135765082 -48523580 + AT_rich Low_complexity Low_complexity 1 25 0 236 252 19 28 chr4 135765163 135765270 -48523392 - L1ME4a LINE L1 -9 6112 6007 387 315 39 33 chr4 135765475 135765656 -48523006 + MIR SINE MIR 81 262 0 31 44 0 0 chr4 135766637 135766682 -48521980 + AT_rich Low_complexity Low_complexity 1 45 0 234 312 75 32 chr4 135766714 135766900 -48521762 + MIR SINE MIR 56 249 -13 502 326 18 57 chr4 135767181 135767460 -48521202 - L1MCc LINE L1 -4892 2049 1782 1360 288 86 26 chr4 135767487 135768439 -48520223 - L1MCc LINE L1 -4893 1530 814 880 328 77 19 chr4 135768618 135768682 -48519980 - L1MCc LINE L1 -5911 512 453 1354 52 11 0 chr4 135768682 135768856 -48519806 + L1PA4 LINE L1 5977 6152 -3 880 328 77 19 chr4 135768856 135769258 -48519404 - L1MCc LINE L1 -5970 453 19 22 0 0 0 chr4 135769417 135769439 -48519223 + AT_rich Low_complexity Low_complexity 1 22 0 1420 262 72 70 chr4 135769738 135770391 -48518271 - MLT1E1 LTR MaLR 0 654 1 30 59 0 0 chr4 135770417 135770468 -48518194 + AT_rich Low_complexity Low_complexity 1 51 0 580 300 66 43 chr4 135770532 135770789 -48517873 + MLT1I LTR MaLR 123 385 -24 21 0 0 0 chr4 135771542 135771563 -48517099 + AT_rich Low_complexity Low_complexity 1 21 0 304 287 82 78 chr4 135771593 135771861 -48516801 - HAL1b LINE L1 -739 609 341 549 304 149 32 chr4 135772370 135772712 -48515950 + L1MEd LINE L1 453 834 -5285 2093 116 3 7 chr4 135773120 135773430 -48515232 - AluSg SINE Alu -1 309 1 2135 177 25 25 chr4 135773509 135773943 -48514719 - Tigger2a DNA MER2_type 0 434 1 404 322 12 41 chr4 135773994 135774165 -48514497 - MER63A DNA MER1_type -1 209 44 200 121 30 0 chr4 135774210 135774243 -48514419 + T-rich Low_complexity Low_complexity 2 35 0 263 254 124 30 chr4 135777074 135777243 -48511419 - L1MC4a LINE L1 -1880 5928 5744 2096 139 0 3 chr4 135777579 135777889 -48510773 + AluSx SINE Alu 1 309 -3 237 278 44 0 chr4 135777889 135777979 -48510683 + L1M4 LINE L1 4510 4603 -1543 21 36 0 0 chr4 135778534 135778562 -48510100 + AT_rich Low_complexity Low_complexity 1 28 0 762 161 0 92 chr4 135779224 135779398 -48509264 - MER50 LTR ERV1 -130 604 447 * 978 179 82 10 chr4 135779385 135779592 -48509070 - MER50 LTR ERV1 -512 222 1 1015 111 19 12 chr4 135779592 135779754 -48508908 - MER50-int LTR ERV1 -8 7197 7035 488 16 16 0 chr4 135779754 135779815 -48508847 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 381 22 0 0 chr4 135779827 135779873 -48508789 + (TG)n Simple_repeat Simple_repeat 1 46 0 11364 155 27 7 chr4 135781124 135784047 -48504615 - L1PA11 LINE L1 -3 7609 4632 15916 207 43 21 chr4 135784239 135785707 -48502955 + L1M1 LINE L1 23 1457 -6108 8287 60 11 1 chr4 135785707 135786767 -48501895 - MER11C LTR ERVK 0 1071 1 15916 207 43 21 chr4 135786767 135787726 -48500936 + L1M1 LINE L1 1457 2393 -5172 3695 32 2 0 chr4 135787726 135788168 -48500494 + L1PA4 LINE L1 5705 6148 -7 15916 207 43 21 chr4 135788168 135790116 -48498546 + L1M1 LINE L1 2393 4502 -3063 2171 123 0 0 chr4 135790116 135790418 -48498244 + AluSg1 SINE Alu 1 302 -7 240 226 0 0 chr4 135790426 135790479 -48498183 + AluJ/monomer SINE Alu 1 53 -249 6273 169 18 20 chr4 135790489 135791664 -48496998 - Tigger1 DNA MER2_type -220 2198 1026 13719 195 31 12 chr4 135791685 135794900 -48493762 - L1PA14 LINE L1 -664 5497 2228 3979 140 12 25 chr4 135794902 135795572 -48493090 + L1PA14 LINE L1 5499 6159 -2 1382 170 11 23 chr4 135795572 135795698 -48492964 - Tigger1 DNA MER2_type -1442 976 850 1733 158 71 49 chr4 135795698 135796065 -48492597 + THE1C LTR MaLR 1 375 0 1382 170 11 23 chr4 135796065 135796203 -48492459 - Tigger1 DNA MER2_type -1568 850 715 1042 184 5 10 chr4 135796208 135796404 -48492258 - Tigger1 DNA MER2_type -2209 209 15 330 246 163 96 chr4 135799032 135799272 -48489390 + MIR SINE MIR 2 257 -5 2082 181 12 2 chr4 135799557 135799988 -48488674 - L1PA11 LINE L1 -2943 4641 4207 * 13527 188 32 15 chr4 135799984 135800341 -48488321 - L1PB1 LINE L1 0 6867 6518 405 0 0 0 chr4 135800341 135800386 -48488276 + (TA)n Simple_repeat Simple_repeat 1 45 0 348 24 0 0 chr4 135800385 135800426 -48488236 + (CA)n Simple_repeat Simple_repeat 2 42 0 * 13527 188 32 15 chr4 135800386 135803671 -48484991 - L1PB1 LINE L1 -349 6518 3291 411 21 0 0 chr4 135803671 135803719 -48484943 + (CA)n Simple_repeat Simple_repeat 1 48 0 13527 188 32 15 chr4 135803719 135804633 -48484029 - L1PB1 LINE L1 -3576 3291 2394 202 28 28 28 chr4 135804633 135804669 -48483993 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 13527 188 32 15 chr4 135804669 135805522 -48483140 - L1PB1 LINE L1 -4473 2394 1413 380 84 28 14 chr4 135805532 135805603 -48483059 - L1PB1 LINE L1 -5686 1177 1106 1055 173 11 0 chr4 135805603 135805794 -48482868 - L1PB1 LINE L1 -6668 195 3 7193 236 29 44 chr4 135805804 135807529 -48481133 - L1PA11 LINE L1 -3353 4231 2482 3182 109 11 7 chr4 135807529 135807980 -48480682 + MLT2A2 LTR ERVL 1 453 0 7193 236 29 44 chr4 135807980 135809371 -48479291 - L1PA11 LINE L1 -5102 2482 94 1521 86 0 0 chr4 135809379 135809595 -48479067 - AluY SINE Alu 0 317 102 2229 94 0 25 chr4 135809615 135809934 -48478728 - AluY SINE Alu 0 311 1 360 158 0 0 chr4 135809934 135809991 -48478671 - L1PA11 LINE L1 -7471 110 54 376 271 57 51 chr4 135810531 135810708 -48477954 - LTR33A LTR ERVL 0 523 346 1794 151 30 27 chr4 135811009 135811346 -48477316 - THE1C LTR MaLR -37 338 1 201 74 0 0 chr4 135811494 135811521 -48477141 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 349 273 42 56 chr4 135812096 135812239 -48476423 + MIR SINE MIR 88 228 -34 386 202 11 11 chr4 135812411 135812505 -48476157 - L1ME LINE L1 -423 5739 5646 622 162 19 133 chr4 135812537 135812747 -48475915 - MER53 DNA DNA -1 188 3 2195 87 7 10 chr4 135813215 135813515 -48475147 - AluSg SINE Alu -11 299 1 24 0 0 0 chr4 135813710 135813734 -48474928 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr4 135813861 135813889 -48474773 + AT_rich Low_complexity Low_complexity 1 28 0 193 396 44 0 chr4 135814010 135814101 -48474561 + L2 LINE L2 2985 3079 -193 23 68 0 0 chr4 135814434 135814478 -48474184 + AT_rich Low_complexity Low_complexity 1 44 0 4218 60 6 8 chr4 135814574 135815103 -48473559 + SVA Other Other 859 1386 0 274 313 62 0 chr4 135815222 135815334 -48473328 - MIR SINE MIR -64 198 80 2460 143 0 0 chr4 135815695 135816059 -48472603 + THE1B LTR MaLR 1 364 0 9691 116 39 44 chr4 135816061 135817645 -48471017 + THE1B-int LTR MaLR 3 1579 -1 2283 155 3 0 chr4 135817646 135818007 -48470655 + THE1B LTR MaLR 1 362 -2 1389 216 79 20 chr4 135819372 135819715 -48468947 + MLT1A1 LTR MaLR 1 363 -2 1395 274 76 25 chr4 135819746 135820493 -48468169 - MER69 DNA AcHobo -258 2268 1484 756 273 100 24 chr4 135820502 135820751 -48467911 - MER69 DNA AcHobo -944 282 15 194 145 72 12 chr4 135822162 135822245 -48466417 + (TA)n Simple_repeat Simple_repeat 2 89 0 21 0 0 0 chr4 135822701 135822722 -48465940 + AT_rich Low_complexity Low_complexity 1 21 0 2243 64 30 0 chr4 135823694 135823989 -48464673 - AluY SINE Alu -7 304 1 34 0 0 0 chr4 135824479 135824513 -48464149 + AT_rich Low_complexity Low_complexity 1 34 0 38 22 0 0 chr4 135824598 135824643 -48464019 + AT_rich Low_complexity Low_complexity 1 45 0 7526 24 17 0 chr4 135825268 135826253 -48462409 - L1PA3 LINE L1 0 6155 5160 31 0 0 0 chr4 135827458 135827489 -48461173 + AT_rich Low_complexity Low_complexity 1 31 0 309 375 70 8 chr4 135827749 135827992 -48460670 - MIR SINE MIR 0 262 5 22 56 0 0 chr4 135828310 135828346 -48460316 + AT_rich Low_complexity Low_complexity 1 36 0 474 291 120 39 chr4 135829102 135829593 -48459069 - L1M4 LINE L1 -1471 4675 4145 280 256 122 0 chr4 135829723 135829813 -48458849 + LTR52 LTR ERVL 1 101 -320 186 43 0 0 chr4 135829841 135829864 -48458798 + (A)n Simple_repeat Simple_repeat 1 23 0 342 0 0 0 chr4 135830114 135830152 -48458510 + (TG)n Simple_repeat Simple_repeat 1 38 0 332 230 27 0 chr4 135830152 135830226 -48458436 + LTR52 LTR ERVL 346 421 0 24 0 0 0 chr4 135830465 135830489 -48458173 + AT_rich Low_complexity Low_complexity 1 24 0 1507 171 55 87 chr4 135832019 135832422 -48456240 - MLT1B LTR MaLR 0 390 1 1581 177 46 25 chr4 135833035 135833402 -48455260 - THE1C LTR MaLR 0 375 1 202 175 0 35 chr4 135833479 135833536 -48455126 + CT-rich Low_complexity Low_complexity 4 58 0 209 125 0 21 chr4 135833584 135833632 -48455030 + (CCAA)n Simple_repeat Simple_repeat 2 48 0 1003 94 6 22 chr4 135833772 135833952 -48454710 + (TTCC)n Simple_repeat Simple_repeat 4 180 0 22 35 0 0 chr4 135834711 135834740 -48453922 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr4 135835097 135835132 -48453530 + AT_rich Low_complexity Low_complexity 1 35 0 39 0 0 0 chr4 135835750 135835789 -48452873 + AT_rich Low_complexity Low_complexity 1 39 0 898 265 96 27 chr4 135836070 135836477 -48452185 + MLT1C LTR MaLR 8 442 -25 841 250 31 13 chr4 135836624 135836923 -48451739 + AluJo SINE Alu 85 387 0 359 256 16 40 chr4 135837167 135837292 -48451370 + L1MEd LINE L1 290 411 -6235 2042 109 7 14 chr4 135837324 135837633 -48451029 + AluSg SINE Alu 2 308 0 1403 226 112 54 chr4 135837878 135839102 -48449560 + L1M4c LINE L1 816 2703 -3943 2179 108 0 0 chr4 135839136 135839433 -48449229 - AluSc SINE Alu -12 297 1 4649 269 47 35 chr4 135839436 135841469 -48447193 + L1M4c LINE L1 2703 4759 -1885 1972 128 17 0 chr4 135841842 135842138 -48446524 - AluSx SINE Alu -11 301 1 1046 329 98 35 chr4 135842642 135843805 -48444857 + L1MEd LINE L1 526 1761 -4873 314 250 85 67 chr4 135843827 135843991 -48444671 - MER63A DNA MER1_type 0 210 44 270 286 84 13 chr4 135844069 135844223 -48444439 + HAL1 LINE L1 1397 1561 -946 785 237 32 21 chr4 135844458 135844648 -48444014 - MLT1E2 LTR MaLR -44 610 419 972 238 30 47 chr4 135844666 135844964 -48443698 - MLT1E2 LTR MaLR -333 293 1 21 57 0 0 chr4 135846478 135846513 -48442149 + AT_rich Low_complexity Low_complexity 1 35 0 2022 136 0 13 chr4 135846523 135846833 -48441829 - AluSq SINE Alu -7 306 1 690 335 71 20 chr4 135847218 135847612 -48441050 + MLT1H1 LTR MaLR 142 555 0 1172 168 0 0 chr4 135848530 135848726 -48439936 + L1P LINE L1 3377 3572 -2574 2613 101 61 12 chr4 135848731 135849159 -48439503 + L1PA10 LINE L1 5710 6158 -10 8327 91 15 26 chr4 135849202 135850449 -48438213 - L1PA7 LINE L1 -1419 4727 3494 6824 73 6 0 chr4 135850449 135851889 -48436773 + L1PA7 LINE L1 4732 6153 -1 525 333 34 0 chr4 135852341 135852548 -48436114 + MIR SINE MIR 39 252 -10 25 31 0 0 chr4 135853380 135853412 -48435250 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr4 135853533 135853555 -48435107 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 135853669 135853697 -48434965 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr4 135853850 135853886 -48434776 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr4 135854009 135854032 -48434630 + AT_rich Low_complexity Low_complexity 1 23 0 26 50 0 0 chr4 135854343 135854383 -48434279 + AT_rich Low_complexity Low_complexity 1 40 0 1835 133 162 24 chr4 135857630 135858006 -48430656 - MSTA LTR MaLR 0 428 1 2150 82 65 0 chr4 135858150 135858441 -48430221 + AluSg SINE Alu 1 310 0 28 29 0 0 chr4 135859222 135859257 -48429405 + AT_rich Low_complexity Low_complexity 1 35 0 2442 55 0 0 chr4 135860352 135860645 -48428017 + AluY SINE Alu 1 293 -18 272 155 86 9 chr4 135861924 135862040 -48426622 + (TA)n Simple_repeat Simple_repeat 2 126 0 23 33 0 0 chr4 135862236 135862266 -48426396 + AT_rich Low_complexity Low_complexity 1 30 0 811 296 97 20 chr4 135863290 135863733 -48424929 - L1ME1 LINE L1 -23 6143 5667 704 277 42 0 chr4 135863807 135864082 -48424580 - L1ME1 LINE L1 -720 5446 5165 3532 227 51 40 chr4 135864210 135864374 -48424288 + L1M2 LINE L1 1627 1788 -5060 1975 154 3 16 chr4 135864374 135864686 -48423976 + AluSx SINE Alu 3 310 -2 3532 227 51 40 chr4 135864686 135866340 -48422322 + L1M2 LINE L1 1788 3470 -3378 2291 92 0 3 chr4 135866340 135866644 -48422018 - AluY SINE Alu -8 303 1 3532 227 51 40 chr4 135866644 135866753 -48421909 + L1M2 LINE L1 3470 3576 -3272 455 270 20 0 chr4 135866759 135866859 -48421803 - MER74C LTR ERVL -294 166 65 913 305 40 0 chr4 135866903 135867398 -48421264 - L1ME1 LINE L1 -2847 3299 2785 2856 219 40 34 chr4 135867413 135868204 -48420458 - L1MC3 LINE L1 -17 7768 6973 * 3916 211 9 44 chr4 135868186 135869141 -48419521 + L1MC3 LINE L1 6864 7785 0 1056 216 113 62 chr4 135870319 135870690 -48417972 + MLT1B LTR MaLR 1 390 0 707 212 7 15 chr4 135871592 135871729 -48416933 + Tigger3(Golem) DNA MER2_type 7 142 -2887 * 1276 195 28 0 chr4 135871726 135871977 -48416685 + Tigger3(Golem) DNA MER2_type 2772 3029 0 1449 174 64 47 chr4 135873024 135873368 -48415294 + THE1C LTR MaLR 26 375 0 5171 150 47 13 chr4 135873368 135874239 -48414423 + THE1C-int LTR MaLR 1 901 -679 290 150 0 33 chr4 135874239 135874299 -48414363 + THE1C-int LTR MaLR 1523 1580 0 866 191 173 49 chr4 135874299 135874623 -48414039 + THE1C LTR MaLR 1 364 0 24 67 0 0 chr4 135874932 135874977 -48413685 + AT_rich Low_complexity Low_complexity 1 45 0 438 248 0 0 chr4 135875799 135875924 -48412738 + CT-rich Low_complexity Low_complexity 1 125 0 668 186 0 0 chr4 135875929 135876047 -48412615 - AluSg/x SINE Alu -10 302 185 2025 72 22 0 chr4 135876047 135876324 -48412338 + AluY SINE Alu 2 284 -27 902 284 117 24 chr4 135876822 135877326 -48411336 - L1ME1 LINE L1 -21 6145 5595 2365 52 0 0 chr4 135878739 135879029 -48409633 - AluY SINE Alu -16 295 6 1549 200 39 28 chr4 135879350 135879710 -48408952 + MLT1B LTR MaLR 1 364 -26 22 56 0 0 chr4 135880098 135880134 -48408528 + AT_rich Low_complexity Low_complexity 1 36 0 302 377 46 0 chr4 135880280 135880410 -48408252 - L2 LINE L2 -4 3268 3133 2560 214 39 11 chr4 135881069 135881692 -48406970 - L1MA10 LINE L1 0 6334 5695 315 185 11 54 chr4 135881681 135881705 -48406957 + L1MB1 LINE L1 6076 6099 -69 * 7173 165 22 2 chr4 135881705 135882980 -48405682 - HSMAR2 DNA Mariner 0 1302 3 315 185 11 54 chr4 135882980 135883047 -48405615 + L1MB1 LINE L1 6099 6163 -5 2716 358 44 27 chr4 135883174 135885703 -48402959 - HERVL LTR ERVL -22 5350 2842 536 345 126 0 chr4 135885807 135886100 -48402562 - LTR16B LTR ERVL -134 330 1 226 256 120 40 chr4 135886202 135886327 -48402335 + MIR SINE MIR 85 219 -43 21 0 0 0 chr4 135887770 135887791 -48400871 + AT_rich Low_complexity Low_complexity 1 21 0 24 67 0 0 chr4 135887831 135887876 -48400786 + AT_rich Low_complexity Low_complexity 1 45 0 290 185 12 0 chr4 135888007 135888088 -48400574 + (TA)n Simple_repeat Simple_repeat 1 82 0 232 300 12 0 chr4 135888105 135888185 -48400477 + L1MC4 LINE L1 6614 6694 -1348 21 0 0 0 chr4 135888808 135888829 -48399833 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr4 135889616 135889651 -48399011 + AT_rich Low_complexity Low_complexity 1 35 0 27 49 0 0 chr4 135889706 135889747 -48398915 + AT_rich Low_complexity Low_complexity 1 41 0 999 259 123 38 chr4 135889778 135890256 -48398406 - LTR40a LTR ERVL 0 519 1 416 331 154 20 chr4 135890407 135890712 -48397950 - LTR16B LTR ERVL 0 464 119 933 239 24 5 chr4 135891070 135891279 -48397383 - MER58A DNA MER1_type 0 224 12 411 21 0 0 chr4 135891673 135891721 -48396941 + (TA)n Simple_repeat Simple_repeat 1 48 0 429 66 0 0 chr4 135892142 135892203 -48396459 + (TA)n Simple_repeat Simple_repeat 1 61 0 278 241 0 0 chr4 135893748 135893806 -48394856 + MER117 DNA MER1_type 5 62 -135 192 256 122 11 chr4 135893911 135894001 -48394661 + MIR SINE MIR 65 164 -98 184 281 0 35 chr4 135896180 135896237 -48392425 - MIR3 SINE MIR -16 192 138 24 0 0 0 chr4 135896353 135896377 -48392285 + AT_rich Low_complexity Low_complexity 1 24 0 21 71 0 0 chr4 135896714 135896756 -48391906 + AT_rich Low_complexity Low_complexity 1 42 0 2503 209 18 34 chr4 135897298 135897794 -48390868 + MER44D DNA MER2_type 1 544 -1943 2443 117 23 5 chr4 135897794 135898178 -48390484 - L1PA11 LINE L1 0 6174 5784 2503 209 18 34 chr4 135898178 135898236 -48390426 + MER44D DNA MER2_type 544 601 -4 301 383 50 0 chr4 135900734 135900875 -48387787 + L2 LINE L2 2873 3020 -293 230 296 74 0 chr4 135900875 135900956 -48387706 - MER91C DNA MER1_type 0 140 54 322 298 234 13 chr4 135901007 135901242 -48387420 + L2 LINE L2 3021 3307 -6 832 212 0 0 chr4 135901426 135901591 -48387071 + FRAM SINE Alu 1 165 -1 25 31 0 0 chr4 135901821 135901853 -48386809 + AT_rich Low_complexity Low_complexity 1 32 0 560 261 0 0 chr4 135902080 135902219 -48386443 + FLAM_A SINE Alu 1 139 0 496 107 0 0 chr4 135902626 135902701 -48385961 + MADE1 DNA Mariner 6 80 0 21 0 0 0 chr4 135903215 135903236 -48385426 + AT_rich Low_complexity Low_complexity 1 21 0 279 337 54 33 chr4 135903272 135903456 -48385206 - MER5A DNA MER1_type -1 188 1 2558 176 57 49 chr4 135903786 135904333 -48384329 + L1M4c LINE L1 20 570 -5814 1795 204 22 29 chr4 135904329 135904458 -48384204 + L1M4c LINE L1 2207 2335 -4047 * 1472 150 53 8 chr4 135904458 135904724 -48383938 + AluSx SINE Alu 35 312 0 1795 204 22 29 chr4 135904724 135905309 -48383353 + L1M4c LINE L1 2335 2914 -3468 940 133 12 30 chr4 135905309 135905474 -48383188 + L1MB3 LINE L1 5560 5721 -450 502 176 0 11 chr4 135905475 135905566 -48383096 + MER46A DNA MER2_type 2 91 -145 * 5117 153 14 15 chr4 135905548 135905717 -48382945 + MER46A DNA MER2_type 1869 4294966840 -3187 17609 40 2 0 chr4 135905717 135908693 -48379969 - L1PA4 LINE L1 -3 6152 3205 5117 153 14 15 chr4 135908693 135909386 -48379276 + MER46A DNA MER2_type -457 235 -1 717 132 41 196 chr4 135909386 135909652 -48379010 + L1MB3 LINE L1 5719 5943 -240 1448 248 123 7 chr4 135909707 135910034 -48378628 + MER21B LTR ERV1 293 679 -184 273 29 0 0 chr4 135910034 135910068 -48378594 + (TG)n Simple_repeat Simple_repeat 1 34 0 1448 248 123 7 chr4 135910068 135910155 -48378507 + MER21B LTR ERV1 679 755 -108 1025 204 17 4 chr4 135910238 135910478 -48378184 + L1MB3 LINE L1 5938 6180 -3 248 308 9 0 chr4 135910643 135910750 -48377912 + L1ME LINE L1 5562 5669 -452 354 78 0 0 chr4 135910855 135910906 -48377756 + MADE1 DNA Mariner 30 80 0 21 0 0 0 chr4 135910909 135910930 -48377732 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 135911427 135911448 -48377214 + AT_rich Low_complexity Low_complexity 1 21 0 847 232 62 8 chr4 135911537 135911778 -48376884 + MER96B DNA MER1_type? 1 254 -163 389 298 50 14 chr4 135911779 135911920 -48376742 - MIR SINE MIR -110 152 7 1473 158 0 25 chr4 135912280 135912520 -48376142 + L1PA15 LINE L1 5820 6053 -112 443 134 0 0 chr4 135912520 135912587 -48376075 + AluSp SINE Alu 107 173 -140 596 159 0 0 chr4 135912587 135912700 -48375962 + L1PA15 LINE L1 6050 6162 -3 23 0 0 0 chr4 135912701 135912724 -48375938 + AT_rich Low_complexity Low_complexity 1 23 0 24 77 0 0 chr4 135912871 135912923 -48375739 + AT_rich Low_complexity Low_complexity 1 52 0 2271 170 58 28 chr4 135913255 135913459 -48375203 - MER31A LTR ERV1 -6 479 283 2368 165 26 7 chr4 135913459 135913877 -48374785 - MSTB LTR MaLR 0 426 1 2271 170 58 28 chr4 135913877 135914137 -48374525 - MER31A LTR ERV1 -202 283 1 25 51 0 0 chr4 135915931 135915970 -48372692 + AT_rich Low_complexity Low_complexity 1 39 0 360 0 0 0 chr4 135916143 135916183 -48372479 + (TA)n Simple_repeat Simple_repeat 2 41 0 1939 159 8 44 chr4 135916211 135916600 -48372062 - THE1C LTR MaLR 0 375 1 9008 147 38 12 chr4 135916600 135918140 -48370522 - THE1C-int LTR MaLR 0 1580 1 1434 202 68 46 chr4 135918140 135918507 -48370155 - THE1C LTR MaLR 0 375 1 558 332 59 5 chr4 135919330 135919615 -48369047 + L2 LINE L2 2759 3074 -239 658 178 33 122 chr4 135919634 135919848 -48368814 + MER67D LTR ERV1 17 211 -303 2548 136 20 18 chr4 135919868 135920308 -48368354 + L1PB1 LINE L1 5711 6151 0 807 272 132 4 chr4 135920353 135920625 -48368037 + MER67D LTR ERV1 208 514 0 333 244 6 139 chr4 135920672 135920844 -48367818 + L2 LINE L2 3123 3271 -42 1216 197 4 0 chr4 135921012 135921240 -48367422 - MER46A DNA MER2_type -3 233 5 216 0 0 0 chr4 135922179 135922203 -48366459 + (T)n Simple_repeat Simple_repeat 1 24 0 243 169 77 0 chr4 135922742 135922807 -48365855 - Tigger1 DNA MER2_type -149 2269 2200 2426 121 13 5 chr4 135922808 135923180 -48365482 - THE1C LTR MaLR 0 375 1 8629 131 36 67 chr4 135923181 135924811 -48363851 - THE1C-int LTR MaLR -1 1579 1 2171 130 0 99 chr4 135924811 135925187 -48363475 - THE1C LTR MaLR 0 375 42 3142 83 0 5 chr4 135925187 135925608 -48363054 + L1PA8 LINE L1 5746 6164 -8 2171 130 0 99 chr4 135925608 135925647 -48363015 - THE1C LTR MaLR -333 42 1 * 11885 176 20 15 chr4 135925647 135927820 -48360842 - Tigger1 DNA MER2_type -215 2203 20 446 298 33 47 chr4 135928459 135928674 -48359988 + MIR SINE MIR 30 241 -21 270 230 135 47 chr4 135928903 135929051 -48359611 - L2 LINE L2 -61 3252 3092 36 40 0 0 chr4 135929158 135929208 -48359454 + AT_rich Low_complexity Low_complexity 1 50 0 1549 231 141 78 chr4 135929502 135930068 -48358594 - MER90 LTR ERV1 -2 612 11 559 238 101 24 chr4 135930354 135930522 -48358140 - L1MCb LINE L1 -5860 185 5 3382 83 377 0 chr4 135931239 135931839 -48356823 + LTR12 LTR ERV1 1 826 0 21 57 0 0 chr4 135931949 135931984 -48356678 + AT_rich Low_complexity Low_complexity 1 35 0 5225 67 6 26 chr4 135932312 135933012 -48355650 - LTR12 LTR ERV1 -2 686 1 599 309 69 58 chr4 135933609 135933733 -48354929 - L2 LINE L2 -3 3310 3189 2974 158 4 4 chr4 135933733 135934228 -48354434 - LOR1a LTR ERV1 -2 495 1 599 309 69 58 chr4 135934228 135934565 -48354097 - L2 LINE L2 -124 3189 2844 21 0 0 0 chr4 135936668 135936689 -48351973 + AT_rich Low_complexity Low_complexity 1 21 0 444 325 69 8 chr4 135936875 135937121 -48351541 + L1M4 LINE L1 11 271 -6588 1219 279 67 52 chr4 135937791 135938610 -48350052 + L1M4 LINE L1 1485 2290 -4669 243 0 0 0 chr4 135938610 135938637 -48350025 + (CA)n Simple_repeat Simple_repeat 2 28 0 1219 279 67 52 chr4 135938637 135938650 -48350012 + L1M4 LINE L1 2290 2301 -4658 198 103 0 0 chr4 135938650 135938679 -48349983 + (TA)n Simple_repeat Simple_repeat 2 30 0 1219 279 67 52 chr4 135938679 135938799 -48349863 + L1M4 LINE L1 2301 2452 -4507 282 299 50 64 chr4 135938915 135939276 -48349386 + L1M4 LINE L1 2473 2828 -4310 3479 253 68 84 chr4 135939417 135941099 -48347563 + L1M4 LINE L1 3834 5540 -1455 231 208 0 21 chr4 135941099 135941147 -48347515 + Tigger5 DNA MER2_type 1 47 -2276 * 269 215 123 0 chr4 135941123 135941188 -48347474 + Tigger5 DNA MER2_type 2251 2323 0 * 3479 253 68 84 chr4 135941188 135942168 -48346494 + L1M4 LINE L1 5581 6535 -460 1008 182 139 84 chr4 135942557 135942903 -48345759 - MLT1A1 LTR MaLR 0 365 1 37 23 0 0 chr4 135943726 135943770 -48344892 + AT_rich Low_complexity Low_complexity 1 44 0 2396 200 54 41 chr4 135943949 135944559 -48344103 + L1MA10 LINE L1 5721 6333 -1 1306 210 27 63 chr4 135944917 135945315 -48343347 - MER39 LTR ERV1 0 687 325 227 234 0 0 chr4 135945327 135945374 -48343288 - MER34 LTR ERV1 -420 122 76 266 289 146 15 chr4 135946311 135946468 -48342194 - L1M4 LINE L1 -589 5585 5403 2906 199 74 13 chr4 135947510 135948144 -48340518 + LTR58 LTR ERV1 1 673 -6 21 71 0 0 chr4 135949077 135949119 -48339543 + AT_rich Low_complexity Low_complexity 1 42 0 2074 94 10 14 chr4 135950445 135950742 -48337920 + AluY SINE Alu 3 298 -13 277 352 23 0 chr4 135950875 135951003 -48337659 + LTR16A LTR ERVL 314 444 -6 585 253 47 21 chr4 135951651 135951911 -48336751 - MER61D LTR ERV1 -14 748 340 4140 176 18 26 chr4 136052140 136052985 -48235677 + L1PB1 LINE L1 5311 6148 -3 32 0 0 0 chr4 136053097 136053129 -48235533 + AT_rich Low_complexity Low_complexity 1 32 0 769 171 8 0 chr4 136053129 136053258 -48235404 - AluSg/x SINE Alu -21 291 162 330 161 18 0 chr4 136053258 136053314 -48235348 + THE1C LTR MaLR 318 374 -1 231 217 33 0 chr4 136053318 136053378 -48235284 + L1P LINE L1 4726 4787 -1359 223 343 90 17 chr4 136054436 136054614 -48234048 + MIR SINE MIR 19 209 -53 1576 266 48 18 chr4 136055241 136055744 -48232918 - LTR40a LTR ERVL -1 518 1 24 0 0 0 chr4 136055816 136055840 -48232822 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 136056639 136056660 -48232002 + AT_rich Low_complexity Low_complexity 1 21 0 2224 115 0 3 chr4 136057443 136057757 -48230905 + AluSq SINE Alu 1 313 0 1051 211 124 28 chr4 136058168 136058530 -48230132 + MER67C LTR ERV1 1 396 -246 346 20 39 0 chr4 136059099 136059150 -48229512 + (TA)n Simple_repeat Simple_repeat 1 53 0 2083 170 3 3 chr4 136059790 136060143 -48228519 - THE1B LTR MaLR 0 364 12 464 208 31 31 chr4 136060587 136060717 -48227945 - THE1C LTR MaLR -245 130 1 1160 183 42 63 chr4 136060718 136061003 -48227659 - AluJo SINE Alu -16 296 18 961 234 0 10 chr4 136061010 136061215 -48227447 + Tigger7 DNA MER2_type 2289 2491 0 288 184 0 0 chr4 136062305 136062354 -48226308 - LTR40a LTR ERVL -4 515 467 597 227 59 114 chr4 136062500 136063024 -48225638 - L1M4 LINE L1 -1550 4596 4102 309 317 85 15 chr4 136063232 136063431 -48225231 - L1M4 LINE L1 -2273 3873 3661 22 56 0 0 chr4 136065017 136065053 -48223609 + AT_rich Low_complexity Low_complexity 1 36 0 26 30 0 0 chr4 136065466 136065499 -48223163 + AT_rich Low_complexity Low_complexity 1 33 0 246 136 74 25 chr4 136065829 136065910 -48222752 + (TA)n Simple_repeat Simple_repeat 1 85 0 407 315 63 39 chr4 136066792 136067078 -48221584 - LTR16C LTR ERVL 0 491 199 972 222 58 38 chr4 136067212 136067260 -48221402 + Tigger6 DNA MER2_type 1290 1336 -261 7366 43 0 0 chr4 136067260 136068354 -48220308 + L1PA5 LINE L1 5056 6149 -5 972 222 58 38 chr4 136068354 136068598 -48220064 + Tigger6 DNA MER2_type 1336 1588 -9 222 312 0 13 chr4 136068822 136068899 -48219763 + L2 LINE L2 2765 2840 -474 21 0 0 0 chr4 136069431 136069452 -48219210 + AT_rich Low_complexity Low_complexity 1 21 0 1312 190 154 0 chr4 136069980 136070285 -48218377 - MER46B DNA MER2_type 0 236 10 30 59 0 0 chr4 136071192 136071243 -48217419 + AT_rich Low_complexity Low_complexity 1 51 0 26 0 0 0 chr4 136071396 136071422 -48217240 + AT_rich Low_complexity Low_complexity 1 26 0 1313 173 8 4 chr4 136071960 136072208 -48216454 + L1PA16 LINE L1 5915 6163 -3 2091 125 0 3 chr4 136072872 136073167 -48215495 + AluSq SINE Alu 1 294 -19 22 0 0 0 chr4 136073325 136073347 -48215315 + AT_rich Low_complexity Low_complexity 1 22 0 1594 261 52 9 chr4 136074544 136074965 -48213697 - MER70B LTR ERVL -137 441 3 396 0 0 0 chr4 136074981 136075025 -48213637 + (TG)n Simple_repeat Simple_repeat 2 45 0 1386 107 39 0 chr4 136075226 136075432 -48213230 + AluSq SINE Alu 1 214 -99 1149 197 17 8 chr4 136075754 136075988 -48212674 + AluJo SINE Alu 58 293 -19 26 30 0 0 chr4 136075989 136076022 -48212640 + AT_rich Low_complexity Low_complexity 1 33 0 3755 98 36 2 chr4 136077048 136077602 -48211060 - LTR12 LTR ERV1 0 714 142 323 335 56 19 chr4 136077643 136077804 -48210858 - MIR SINE MIR -56 206 40 253 261 0 15 chr4 136078122 136078187 -48210475 - MER94 DNA DNA -59 75 12 1103 262 67 5 chr4 136079570 136080020 -48208642 - MER45B DNA AcHobo -500 540 22 2126 111 0 3 chr4 136082055 136082353 -48206309 - AluY SINE Alu -14 297 1 335 330 90 39 chr4 136083194 136083427 -48205235 - L1ME LINE L1 -313 5808 5564 1790 121 0 4 chr4 136083455 136083711 -48204951 + L1P4 LINE L1 5438 5692 -482 1761 218 41 12 chr4 136084527 136084940 -48203722 + MSTB LTR MaLR 2 426 0 25 31 0 0 chr4 136085065 136085097 -48203565 + AT_rich Low_complexity Low_complexity 1 32 0 29 47 0 0 chr4 136085307 136085350 -48203312 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr4 136086876 136086898 -48201764 + AT_rich Low_complexity Low_complexity 1 22 0 38 51 0 0 chr4 136088002 136088061 -48200601 + AT_rich Low_complexity Low_complexity 1 59 0 1399 57 11 0 chr4 136088116 136088293 -48200369 + L1PA5 LINE L1 5969 6147 -7 239 79 26 0 chr4 136088432 136088470 -48200192 + (CA)n Simple_repeat Simple_repeat 1 39 0 24 0 0 0 chr4 136088483 136088507 -48200155 + AT_rich Low_complexity Low_complexity 1 24 0 1837 136 10 10 chr4 136090513 136090808 -48197854 - AluSx SINE Alu -13 299 5 249 318 45 0 chr4 136092483 136092549 -48196113 - MIR SINE MIR -189 73 5 1994 138 12 6 chr4 136093785 136094125 -48194537 + L1PA13 LINE L1 5822 6163 0 278 312 71 12 chr4 136094356 136094526 -48194136 + L1MEc LINE L1 640 819 -5577 848 275 118 56 chr4 136094534 136095307 -48193355 + L1MEc LINE L1 862 1720 -4676 1823 83 15 4 chr4 136095307 136095571 -48193091 + L1MA1 LINE L1 6036 6302 0 848 275 118 56 chr4 136095571 136095860 -48192802 + L1MEc LINE L1 1720 1990 -4406 21 36 0 0 chr4 136097006 136097034 -48191628 + AT_rich Low_complexity Low_complexity 1 28 0 486 301 89 5 chr4 136097644 136097847 -48190815 - MIR SINE MIR -4 258 39 307 328 24 32 chr4 136098839 136098964 -48189698 - L2 LINE L2 0 3313 3190 21 0 0 0 chr4 136099090 136099111 -48189551 + AT_rich Low_complexity Low_complexity 1 21 0 28 48 0 0 chr4 136100692 136100734 -48187928 + AT_rich Low_complexity Low_complexity 1 42 0 213 232 0 50 chr4 136101855 136101954 -48186708 + A-rich Low_complexity Low_complexity 2 95 0 21 0 0 0 chr4 136102311 136102332 -48186330 + AT_rich Low_complexity Low_complexity 1 21 0 183 227 0 0 chr4 136102493 136102559 -48186103 + (TA)n Simple_repeat Simple_repeat 1 66 0 1505 165 7 34 chr4 136102559 136102856 -48185806 - AluSx SINE Alu -23 289 1 664 306 121 69 chr4 136104177 136105214 -48183448 + L1MDa LINE L1 1601 2734 -3987 807 284 47 56 chr4 136105218 136105539 -48183123 + MLT1F LTR MaLR 3 320 -222 2241 185 21 19 chr4 136105959 136106392 -48182270 + LTR51 LTR ERV1 238 671 0 357 294 94 36 chr4 136106461 136107029 -48181633 + L1MDa LINE L1 3280 3907 -2633 2110 125 0 7 chr4 136107029 136107325 -48181337 - AluSg SINE Alu -16 294 1 357 294 94 36 chr4 136107325 136107536 -48181126 + L1MDa LINE L1 3907 4104 -2436 970 287 133 0 chr4 136107790 136108114 -48180548 + MLT2C2 LTR ERVL 51 417 -47 445 113 10 21 chr4 136108114 136108211 -48180451 + (TCTA)n Simple_repeat Simple_repeat 1 96 0 247 172 0 52 chr4 136108247 136108305 -48180357 + MLT2C2 LTR ERVL 466 520 0 23 0 0 0 chr4 136109857 136109880 -48178782 + AT_rich Low_complexity Low_complexity 1 23 0 463 295 9 0 chr4 136109928 136110040 -48178622 + MER81 DNA DNA 1 113 -1 22 0 0 0 chr4 136110552 136110574 -48178088 + AT_rich Low_complexity Low_complexity 1 22 0 764 230 137 65 chr4 136110614 136110862 -48177800 - AluJo SINE Alu -46 266 1 760 251 53 8 chr4 136112239 136112482 -48176180 - MIR SINE MIR -4 258 5 180 111 0 0 chr4 136112866 136112893 -48175769 + (TG)n Simple_repeat Simple_repeat 2 28 0 340 291 73 0 chr4 136114774 136114884 -48173778 + L1M4 LINE L1 3313 3430 -2716 372 22 0 0 chr4 136114894 136114939 -48173723 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 1807 221 94 49 chr4 136115988 136116518 -48172144 - MLT2B3 LTR ERVL 0 554 1 2101 136 19 27 chr4 136116823 136117190 -48171472 + THE1B LTR MaLR 1 364 0 29 94 0 0 chr4 136118674 136118759 -48169903 + AT_rich Low_complexity Low_complexity 1 85 0 301 314 79 0 chr4 136118803 136118943 -48169719 - L1ME3A LINE L1 0 6170 6020 314 313 58 53 chr4 136119228 136119471 -48169191 + L1MC4a LINE L1 5663 5906 -1902 694 257 100 44 chr4 136119472 136119791 -48168871 + MER46C DNA MER2_type 2 338 0 22 70 0 0 chr4 136121196 136121239 -48167423 + AT_rich Low_complexity Low_complexity 1 43 0 2312 67 10 22 chr4 136124972 136125286 -48163376 - AluY SINE Alu -1 310 1 535 125 0 0 chr4 136125435 136125515 -48163147 + MADE1 DNA Mariner 1 80 0 26 98 0 0 chr4 136125642 136125724 -48162938 + AT_rich Low_complexity Low_complexity 1 82 0 255 175 0 0 chr4 136126062 136126102 -48162560 + FLAM SINE Alu 83 122 -11 269 333 0 0 chr4 136127187 136127265 -48161397 + MIR SINE MIR 53 130 -132 267 31 0 0 chr4 136127265 136127297 -48161365 + (TA)n Simple_repeat Simple_repeat 2 33 0 2083 90 17 3 chr4 136128016 136128306 -48160356 + AluY SINE Alu 1 294 -17 230 290 0 0 chr4 136128328 136128390 -48160272 + (CA)n Simple_repeat Simple_repeat 1 62 0 238 314 137 48 chr4 136128754 136128878 -48159784 - L2 LINE L2 -15 3257 3123 200 245 20 0 chr4 136129788 136129837 -48158825 - MIR3 SINE MIR -9 199 150 846 217 35 44 chr4 136129973 136130199 -48158463 + MER58A DNA MER1_type 1 224 0 500 346 91 36 chr4 136130311 136130782 -48157880 - L3 LINE CR1 -1 1576 1080 22 0 0 0 chr4 136130782 136130804 -48157858 + AT_rich Low_complexity Low_complexity 1 22 0 2121 112 7 7 chr4 136133505 136133808 -48154854 - AluY SINE Alu 0 311 9 24 0 0 0 chr4 136134518 136134542 -48154120 + AT_rich Low_complexity Low_complexity 1 24 0 34 79 0 0 chr4 136136256 136136332 -48152330 + AT_rich Low_complexity Low_complexity 1 76 0 2003 139 52 27 chr4 136137137 136137503 -48151159 + THE1C LTR MaLR 1 375 0 2624 123 23 50 chr4 136138060 136138538 -48150124 + MER4C LTR ERV1 1 465 0 2146 160 11 6 chr4 136138963 136139325 -48149337 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr4 136139545 136139566 -48149096 + AT_rich Low_complexity Low_complexity 1 21 0 224 286 197 28 chr4 136140722 136140900 -48147762 - MIR SINE MIR -21 241 34 267 372 85 32 chr4 136143374 136143715 -48144947 + L2 LINE L2 1961 2319 -995 3398 168 15 9 chr4 136144553 136145203 -48143459 - L1PA15-16 LINE L1 -4072 2777 2124 766 211 0 0 chr4 136145173 136145325 -48143337 - L1P LINE L1 -2250 4599 4448 * 4794 226 15 39 chr4 136145318 136145593 -48143069 + L1 LINE L1 3812 4092 -2054 1788 141 3 54 chr4 136145593 136145917 -48142745 + AluSq SINE Alu 1 309 0 4794 226 15 39 chr4 136145917 136147027 -48141635 + L1 LINE L1 4092 5166 -980 421 70 0 28 chr4 136147027 136147111 -48141551 + L1 LINE L1 5239 5320 -826 207 241 19 0 chr4 136148049 136148103 -48140559 + (TA)n Simple_repeat Simple_repeat 2 56 0 209 268 0 0 chr4 136148815 136148856 -48139806 - L2 LINE L2 -91 3222 3182 619 280 77 77 chr4 136148879 136149204 -48139458 + MLT1E LTR MaLR 3 327 -266 397 289 8 23 chr4 136149205 136149333 -48139329 + MLT1E1 LTR MaLR 467 637 -1 748 299 66 42 chr4 136150241 136150575 -48138087 - MLT1G1 LTR MaLR -3 592 251 240 229 0 0 chr4 136150597 136150645 -48138017 - MLT1A1 LTR MaLR 0 365 318 1501 190 21 70 chr4 136150647 136151020 -48137642 - MLT1A1 LTR MaLR -10 355 1 480 302 67 60 chr4 136151073 136151388 -48137274 + ERVL LTR ERVL 2133 2449 -3315 249 359 26 0 chr4 136151610 136151688 -48136974 - L2 LINE L2 -52 3220 3141 1334 147 9 0 chr4 136153494 136153705 -48134957 - AluSg/x SINE Alu -8 304 92 291 54 0 0 chr4 136153851 136153888 -48134774 + (CA)n Simple_repeat Simple_repeat 1 37 0 22 56 0 0 chr4 136154027 136154063 -48134599 + AT_rich Low_complexity Low_complexity 1 36 0 426 220 0 11 chr4 136156039 136156130 -48132532 - MLT1G1 LTR MaLR -508 146 57 22 0 0 0 chr4 136156763 136156785 -48131877 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 136157119 136157140 -48131522 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr4 136157560 136157589 -48131073 + AT_rich Low_complexity Low_complexity 1 29 0 3169 163 53 0 chr4 136157776 136158382 -48130280 - L1MA8 LINE L1 -3 6288 5651 853 162 0 0 chr4 136158384 136158526 -48130136 - L1MA8 LINE L1 -700 5600 5459 * 1694 145 21 49 chr4 136158511 136159035 -48129627 + L1MA8 LINE L1 4979 5473 -743 2242 101 7 0 chr4 136159234 136159531 -48129131 + AluSq SINE Alu 3 301 -12 216 0 0 0 chr4 136159653 136159677 -48128985 + (TG)n Simple_repeat Simple_repeat 2 25 0 247 354 10 0 chr4 136160671 136160767 -48127895 + L2 LINE L2 2274 2370 -944 1124 250 221 18 chr4 136161462 136162014 -48126648 - LTR50 LTR ERVL -131 664 1 256 194 0 56 chr4 136162422 136162494 -48126168 + L1ME4a LINE L1 6054 6121 0 2160 86 0 20 chr4 136162664 136162994 -48125668 + AluY SINE Alu 1 311 0 854 214 119 66 chr4 136163143 136163668 -48124994 + MER52A LTR ERV1 663 1359 -396 326 215 0 38 chr4 136163638 136163717 -48124945 + MER52A LTR ERV1 1282 1357 -398 * 424 291 54 95 chr4 136163977 136164218 -48124444 + MER52A LTR ERV1 1222 1452 -303 351 262 24 86 chr4 136164193 136164403 -48124259 + MER52A LTR ERV1 1556 1752 -3 * 182 204 0 20 chr4 136164409 136164458 -48124204 + (TATATG)n Simple_repeat Simple_repeat 4 51 0 348 154 0 0 chr4 136164700 136164765 -48123897 - Alu SINE Alu -1 299 235 481 321 22 76 chr4 136165060 136165284 -48123378 + MIR SINE MIR 24 235 -27 315 0 0 0 chr4 136165338 136165373 -48123289 + (TA)n Simple_repeat Simple_repeat 1 35 0 223 24 122 0 chr4 136166186 136166227 -48122435 + (TTATA)n Simple_repeat Simple_repeat 1 46 0 1447 196 61 99 chr4 136166709 136167446 -48121216 - LTR28 LTR ERV1 -149 677 1 225 255 99 42 chr4 136167913 136168125 -48120537 - L1MDa LINE L1 -4776 1764 1541 368 189 69 82 chr4 136168205 136168364 -48120298 - MER51D LTR ERV1 -1 656 500 29 0 0 0 chr4 136169448 136169477 -48119185 + AT_rich Low_complexity Low_complexity 1 29 0 1250 100 0 0 chr4 136169494 136169674 -48118988 + AluY SINE Alu 131 310 -1 28 71 0 0 chr4 136170173 136170229 -48118433 + AT_rich Low_complexity Low_complexity 1 56 0 27 0 0 0 chr4 136170310 136170337 -48118325 + AT_rich Low_complexity Low_complexity 1 27 0 1399 253 157 34 chr4 136171455 136172103 -48116559 + MER50 LTR ERV1 7 734 0 24 67 0 0 chr4 136172252 136172297 -48116365 + AT_rich Low_complexity Low_complexity 1 45 0 2235 164 38 28 chr4 136172392 136172861 -48115801 - L1MA8 LINE L1 -3 6288 5815 33 0 0 0 chr4 136174089 136174122 -48114540 + AT_rich Low_complexity Low_complexity 1 33 0 359 280 173 19 chr4 136174413 136174627 -48114035 - MIR SINE MIR -1 261 15 33 43 0 0 chr4 136175533 136175580 -48113082 + AT_rich Low_complexity Low_complexity 1 47 0 181 304 70 43 chr4 136175593 136175708 -48112954 + MIR SINE MIR 3 120 -142 208 324 44 0 chr4 136176250 136176318 -48112344 - L2 LINE L2 -215 3057 2987 21 0 0 0 chr4 136178901 136178922 -48109740 + AT_rich Low_complexity Low_complexity 1 21 0 1822 129 43 0 chr4 136179561 136179839 -48108823 + AluSx SINE Alu 2 291 -21 966 333 27 46 chr4 136180454 136180892 -48107770 + LTR16A LTR ERVL 16 445 -5 501 256 73 24 chr4 136181455 136181619 -48107043 + MIR SINE MIR 32 203 -59 1006 188 216 16 chr4 136181622 136181867 -48106795 + AluJb SINE Alu 1 294 -8 747 255 207 52 chr4 136182801 136183299 -48105363 + MLT1G1 LTR MaLR 21 595 0 294 384 7 14 chr4 136184377 136184515 -48104147 - HUERS-P1 LTR ERV1 -6103 160 24 550 141 0 0 chr4 136184539 136184624 -48104038 - LTR26 LTR ERV1 0 603 519 21 0 0 0 chr4 136185264 136185285 -48103377 + AT_rich Low_complexity Low_complexity 1 21 0 377 95 12 36 chr4 136185293 136185377 -48103285 + (TA)n Simple_repeat Simple_repeat 1 82 0 24 0 0 0 chr4 136185956 136185980 -48102682 + AT_rich Low_complexity Low_complexity 1 24 0 386 244 352 0 chr4 136186063 136186256 -48102406 + MIR SINE MIR 2 262 0 34 42 0 0 chr4 136186336 136186384 -48102278 + AT_rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr4 136186592 136186616 -48102046 + AT_rich Low_complexity Low_complexity 1 24 0 611 143 0 0 chr4 136187467 136187558 -48101104 + AluJ/FLAM SINE Alu 6 96 -216 33 0 0 0 chr4 136187569 136187602 -48101060 + AT_rich Low_complexity Low_complexity 1 33 0 248 268 38 67 chr4 136188461 136188572 -48100090 + MIR SINE MIR 32 141 -67 201 302 16 16 chr4 136188677 136188740 -48099922 + L2 LINE L2 3025 3087 -185 2401 75 0 3 chr4 136189433 136189738 -48098924 - AluY SINE Alu -5 306 3 818 86 77 0 chr4 136189747 136189864 -48098798 - AluY SINE Alu -180 131 6 199 412 15 15 chr4 136190835 136190966 -48097696 + MIR SINE MIR 20 150 -112 802 257 198 40 chr4 136191673 136192097 -48096565 + L1M4b LINE L1 948 1438 -5421 3290 221 17 43 chr4 136192097 136192845 -48095817 - MER44D DNA MER2_type -1 604 4 1743 280 61 33 chr4 136192852 136192959 -48095703 + L1M4b LINE L1 1442 1544 -5594 2263 98 16 0 chr4 136192959 136193266 -48095396 + AluSx SINE Alu 1 312 0 1743 280 61 33 chr4 136193266 136194220 -48094442 + L1M4b LINE L1 1544 2696 -4442 7916 258 53 23 chr4 136194242 136195852 -48092810 + L1MEc LINE L1 1734 3294 -2921 4000 148 25 48 chr4 136195852 136196656 -48092006 - LTR1 LTR ERV1 0 785 1 7916 258 53 23 chr4 136196656 136198508 -48090154 + L1MEc LINE L1 3294 5260 -955 15236 186 27 2 chr4 136198521 136201248 -48087414 + L1MA3 LINE L1 16 2810 -4755 1446 166 59 29 chr4 136201248 136201555 -48087107 - THE1C LTR MaLR 0 375 60 7123 160 11 36 chr4 136201555 136204060 -48084602 + L1MA3 LINE L1 5290 7724 0 3188 182 49 94 chr4 136204087 136205126 -48083536 + L1MB8 LINE L1 5267 6243 -4 2222 91 3 0 chr4 136205958 136206254 -48082408 - AluSg SINE Alu -13 297 1 1774 165 7 3 chr4 136206431 136206740 -48081922 + AluSx SINE Alu 1 310 -2 21 36 0 0 chr4 136206788 136206816 -48081846 + AT_rich Low_complexity Low_complexity 1 28 0 569 352 34 13 chr4 136206856 136207154 -48081508 - MLT1I LTR MaLR -46 363 60 480 360 83 42 chr4 136207197 136207759 -48080903 - L2 LINE L2 -142 3171 2579 252 0 0 0 chr4 136208299 136208327 -48080335 + (TTA)n Simple_repeat Simple_repeat 1 28 0 22 0 0 0 chr4 136209659 136209681 -48078981 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr4 136209723 136209743 -48078919 + (TTAAA)n Simple_repeat Simple_repeat 2 21 0 248 213 0 33 chr4 136210127 136210188 -48078474 + L1MC4 LINE L1 6640 6698 -1344 1238 186 154 26 chr4 136210533 136210665 -48077997 + MER2 DNA MER2_type 1 115 -230 1581 206 42 3 chr4 136210665 136210995 -48077667 - MER2 DNA MER2_type 0 344 2 1238 186 154 26 chr4 136210995 136211168 -48077494 + MER2 DNA MER2_type 115 345 0 234 178 22 0 chr4 136211173 136211218 -48077444 - MIR SINE MIR -71 191 146 419 267 142 0 chr4 136212556 136212676 -48075986 - L2 LINE L2 -4 3268 3132 336 364 31 31 chr4 136212780 136212975 -48075687 - L2 LINE L2 -576 2738 2544 754 182 27 77 chr4 136213186 136213281 -48075381 - L1MA9 LINE L1 0 6312 6214 5597 63 42 13 chr4 136213281 136214039 -48074623 + LTR17 LTR ERV1 1 780 0 754 182 27 77 chr4 136214039 136214163 -48074499 - L1MA9 LINE L1 -98 6214 6104 192 400 14 0 chr4 136214272 136214342 -48074320 - L2 LINE L2 -7 3265 3195 2092 140 3 0 chr4 136214519 136214827 -48073835 + AluSx SINE Alu 2 310 -2 262 351 93 35 chr4 136215016 136215392 -48073270 - L2 LINE L2 -449 2865 2468 1903 205 69 13 chr4 136215467 136215945 -48072717 - LTR22 LTR ERVK -4 505 1 1355 188 126 9 chr4 136216101 136216426 -48072236 + MLT1A1 LTR MaLR 1 363 -2 1313 201 81 39 chr4 136217343 136217702 -48070960 + MLT1A2 LTR MaLR 1 374 0 424 335 62 8 chr4 136218924 136219181 -48069481 - L1M4 LINE L1 -837 5309 5039 1417 326 57 37 chr4 136220327 136221113 -48067549 - L2 LINE L2 -1181 2133 1332 281 281 24 0 chr4 136221556 136221638 -48067024 + L2 LINE L2 3230 3313 0 24 32 0 0 chr4 136222501 136222532 -48066130 + AT_rich Low_complexity Low_complexity 1 31 0 3597 91 2 6 chr4 136223229 136223733 -48064929 - L1PA7 LINE L1 -1 6153 5652 2012 176 8 120 chr4 136224353 136224709 -48063953 - L1MA5 LINE L1 -473 5827 5433 295 132 10 0 chr4 136224709 136224757 -48063905 - AluSx SINE Alu -134 168 129 2012 176 8 120 chr4 136224757 136224773 -48063889 - L1MA5 LINE L1 -867 5433 5417 267 31 0 0 chr4 136224773 136224805 -48063857 + (TTA)n Simple_repeat Simple_repeat 2 33 0 478 17 0 0 chr4 136224805 136224864 -48063798 - L1PA2 LINE L1 -8 6147 6089 2012 176 8 120 chr4 136224864 136225032 -48063630 - L1MA5 LINE L1 -881 5419 5304 2352 86 10 0 chr4 136225134 136225435 -48063227 - AluY SINE Alu -7 304 1 5603 199 46 11 chr4 136225435 136226753 -48061909 - L1M4 LINE L1 -1115 5031 3668 * 12370 246 43 51 chr4 136226741 136226753 -48061909 - L1PA13 LINE L1 -818 5979 5968 2592 161 14 0 chr4 136226753 136227199 -48061463 - L1PA15 LINE L1 0 6165 5714 12370 246 43 51 chr4 136227199 136233186 -48055476 - L1PA13 LINE L1 -829 5968 2 1174 259 45 2 chr4 136233193 136233602 -48055060 - L1 LINE L1 -2478 3668 3204 189 235 25 12 chr4 136233760 136233841 -48054821 + (TA)n Simple_repeat Simple_repeat 2 83 0 220 143 36 18 chr4 136234743 136234799 -48053863 + (TATG)n Simple_repeat Simple_repeat 2 58 0 22 70 0 0 chr4 136234807 136234850 -48053812 + AT_rich Low_complexity Low_complexity 1 43 0 208 121 0 0 chr4 136235269 136235302 -48053360 + (TC)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr4 136235422 136235443 -48053219 + AT_rich Low_complexity Low_complexity 1 21 0 939 127 0 0 chr4 136236566 136236733 -48051929 - AluSx SINE Alu 0 313 147 2959 283 18 28 chr4 136236878 136238087 -48050575 + L1PA13 LINE L1 1489 2721 -4076 1085 93 0 0 chr4 136238307 136238446 -48050216 - AluSx SINE Alu -173 139 1 273 29 0 0 chr4 136238446 136238480 -48050182 + (TTTTTG)n Simple_repeat Simple_repeat 4 37 0 237 35 0 0 chr4 136238849 136238878 -48049784 - MLT1C LTR MaLR -430 37 9 443 281 61 20 chr4 136238887 136239083 -48049579 - MLT1C-int LTR MaLR -1 1734 1531 * 2367 252 30 60 chr4 136239062 136239927 -48048735 - MLT1C-int LTR MaLR -532 839 1 820 277 58 71 chr4 136239927 136240392 -48048270 - MLT1C LTR MaLR 0 467 9 201 39 0 0 chr4 136240484 136240510 -48048152 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 372 22 0 0 chr4 136240926 136240971 -48047691 + (CA)n Simple_repeat Simple_repeat 1 45 0 331 370 42 0 chr4 136241067 136241186 -48047476 - MIR3 SINE MIR -23 185 62 504 213 82 0 chr4 136241938 136242060 -48046602 - MER20 DNA MER1_type 0 219 88 468 217 85 9 chr4 136242099 136242205 -48046457 - MER20 DNA MER1_type -105 114 1 252 0 0 0 chr4 136242297 136242325 -48046337 + (TA)n Simple_repeat Simple_repeat 2 29 0 294 274 41 23 chr4 136242383 136242511 -48046151 + MIR SINE MIR 28 152 -63 24 32 0 0 chr4 136244546 136244577 -48044085 + AT_rich Low_complexity Low_complexity 1 31 0 182 414 75 0 chr4 136244996 136245129 -48043533 - MIR3 SINE MIR -28 180 38 1400 195 62 62 chr4 136245213 136245603 -48043059 + MLT1B LTR MaLR 1 390 0 26 30 0 0 chr4 136245912 136245945 -48042717 + AT_rich Low_complexity Low_complexity 1 33 0 185 349 0 0 chr4 136246177 136246243 -48042419 + MIR SINE MIR 76 141 -121 1573 190 58 25 chr4 136250085 136250448 -48038214 + THE1C LTR MaLR 1 375 0 6285 171 13 44 chr4 136250450 136251674 -48036988 + THE1C-int LTR MaLR 3 1188 -392 3800 216 71 10 chr4 136252159 136253121 -48035541 + L1 LINE L1 3474 4493 -1653 * 12382 183 61 18 chr4 136253119 136255556 -48033106 + L1M1 LINE L1 17 2558 -5007 1934 217 64 4 chr4 136255528 136255979 -48032683 + L1MA7 LINE L1 1 478 -6385 * 4697 105 29 16 chr4 136256007 136256738 -48031924 + L1MA1 LINE L1 5563 6302 0 50 0 0 0 chr4 136256738 136256788 -48031874 + AT_rich Low_complexity Low_complexity 1 50 0 2358 78 0 0 chr4 136256791 136257086 -48031576 + AluY SINE Alu 5 299 -12 2209 225 42 9 chr4 136257087 136257611 -48031051 + L1MA7 LINE L1 5200 5740 -1122 1387 206 21 7 chr4 136257611 136257898 -48030764 + AluJb SINE Alu 1 291 -21 1014 198 0 16 chr4 136257920 136258102 -48030560 + FRAM SINE Alu 1 171 -5 3627 178 32 17 chr4 136258133 136259029 -48029633 + L1MA7 LINE L1 5814 6718 -289 26 0 0 0 chr4 136259445 136259471 -48029191 + AT_rich Low_complexity Low_complexity 1 26 0 895 276 128 44 chr4 136262816 136263366 -48025296 - L1ME2 LINE L1 -9 6155 5534 2043 128 3 0 chr4 136263366 136263662 -48025000 - AluSq SINE Alu -16 297 1 895 276 128 44 chr4 136263662 136263797 -48024865 - L1ME2 LINE L1 -630 5534 5412 21 36 0 0 chr4 136263850 136263878 -48024784 + AT_rich Low_complexity Low_complexity 1 28 0 1065 245 157 28 chr4 136263922 136264526 -48024136 - L1ME2 LINE L1 -873 5273 4592 1288 231 21 35 chr4 136266541 136266965 -48021697 - L1M4 LINE L1 -1000 5146 4729 1961 72 45 4 chr4 136267084 136267349 -48021313 + AluY SINE Alu 1 276 -35 2947 130 24 2 chr4 136267349 136267803 -48020859 + L1PA8 LINE L1 468 931 -5530 * 7823 119 18 0 chr4 136267801 136269005 -48019657 + L1PA8 LINE L1 3335 4560 -1901 7293 109 2 2 chr4 136269006 136270875 -48017787 + L1PA8 LINE L1 4607 6476 -11 21 36 0 0 chr4 136271099 136271127 -48017535 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 136271145 136271167 -48017495 + AT_rich Low_complexity Low_complexity 1 22 0 182 391 113 15 chr4 136271603 136271664 -48016998 + L2 LINE L2 3122 3176 -96 1908 216 81 0 chr4 136271664 136272058 -48016604 + MSTB LTR MaLR 1 426 0 182 391 113 15 chr4 136272058 136272129 -48016533 + L2 LINE L2 3176 3267 -5 771 161 7 27 chr4 136272185 136272334 -48016328 - L1PA16 LINE L1 -10 6156 6011 1140 209 52 0 chr4 136272334 136272583 -48016079 + L1P LINE L1 3638 3899 -2247 578 358 69 37 chr4 136273911 136274403 -48014259 + L1PA13 LINE L1 80 587 -6200 250 404 13 0 chr4 136274446 136274597 -48014065 + L1PA13 LINE L1 1364 1516 -5271 5639 250 38 31 chr4 136275382 136278244 -48010418 + L1PA13 LINE L1 1371 4346 -2451 27 49 0 0 chr4 136278244 136278285 -48010377 + AT_rich Low_complexity Low_complexity 1 41 0 220 243 9 54 chr4 136278746 136278857 -48009805 + (GGGTG)n Simple_repeat Simple_repeat 3 108 0 921 235 23 38 chr4 136279070 136279415 -48009247 + L1 LINE L1 4395 4734 -2063 662 117 0 0 chr4 136279421 136279515 -48009147 + AluS SINE Alu 5 98 -214 232 190 0 17 chr4 136279527 136279585 -48009077 + L1M4 LINE L1 5770 5826 -348 2157 131 0 3 chr4 136279592 136279905 -48008757 + AluSq SINE Alu 1 312 -1 1557 239 0 13 chr4 136279910 136280290 -48008372 + L1 LINE L1 4724 5098 -1699 1366 188 77 28 chr4 136280259 136280611 -48008051 + L1PA16 LINE L1 6447 6815 -2 * 24 32 0 0 chr4 136281098 136281129 -48007533 + AT_rich Low_complexity Low_complexity 1 31 0 21 71 0 0 chr4 136281893 136281935 -48006727 + AT_rich Low_complexity Low_complexity 1 42 0 358 255 7 7 chr4 136282434 136282583 -48006079 + CT-rich Low_complexity Low_complexity 2 150 0 26 30 0 0 chr4 136282882 136282915 -48005747 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr4 136283672 136283693 -48004969 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr4 136283762 136283791 -48004871 + AT_rich Low_complexity Low_complexity 1 29 0 1108 272 81 28 chr4 136283902 136284361 -48004301 + MLT1D LTR MaLR 23 505 0 22 0 0 0 chr4 136284471 136284493 -48004169 + AT_rich Low_complexity Low_complexity 1 22 0 516 321 52 30 chr4 136284626 136284993 -48003669 + L1MEd LINE L1 881 1255 -4864 589 297 64 21 chr4 136285334 136285617 -48003045 + L1MEc LINE L1 100 394 -6002 1961 268 81 45 chr4 136285645 136286762 -48001900 + L1MEc LINE L1 507 1663 -4733 238 229 0 0 chr4 136286867 136286928 -48001734 - L1ME3 LINE L1 -8 6154 6094 235 172 20 30 chr4 136287009 136287108 -48001554 + (TA)n Simple_repeat Simple_repeat 1 98 0 455 333 18 0 chr4 136287123 136287294 -48001368 - L1ME3 LINE L1 -102 6060 5887 324 300 71 78 chr4 136287322 136287759 -48000903 - L1ME3 LINE L1 -218 5944 5511 308 158 13 0 chr4 136287800 136287876 -48000786 + GA-rich Low_complexity Low_complexity 2 78 0 2202 170 5 2 chr4 136288230 136288630 -48000032 + L1PA15 LINE L1 5765 6165 0 26 0 0 0 chr4 136288979 136289005 -47999657 + AT_rich Low_complexity Low_complexity 1 26 0 758 244 12 0 chr4 136289005 136289169 -47999493 - AluJb SINE Alu -17 295 130 212 0 36 0 chr4 136292926 136292954 -47995708 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 200 348 150 27 chr4 136293761 136293831 -47994831 - L2 LINE L2 -3035 279 219 333 0 0 0 chr4 136293831 136293868 -47994794 + (TG)n Simple_repeat Simple_repeat 1 37 0 200 348 150 27 chr4 136293868 136293984 -47994678 - L2 LINE L2 -3095 219 70 988 191 64 124 chr4 136294577 136294965 -47993697 + MLT1A1 LTR MaLR 1 365 0 577 203 23 15 chr4 136295333 136295466 -47993196 + L1MC2 LINE L1 161 294 -6270 654 128 191 35 chr4 136295525 136295643 -47993019 + L1MC2 LINE L1 810 955 -5090 4182 120 21 2 chr4 136295643 136296275 -47992387 - LTR9B LTR ERV1 0 644 1 654 128 191 35 chr4 136296275 136296297 -47992365 + L1MC2 LINE L1 955 972 -5073 1864 190 147 38 chr4 136296303 136296835 -47991827 - LTR49 LTR ERV1 -5 590 1 2303 238 127 14 chr4 136296839 136297965 -47990697 + L1MC2 LINE L1 981 2422 -4323 1824 246 23 19 chr4 136297994 136298562 -47990100 + L1MC2 LINE L1 3746 4315 -2249 3103 133 97 13 chr4 136298562 136299096 -47989566 + LTR12 LTR ERV1 2 580 -134 4101 224 61 24 chr4 136299106 136301450 -47987212 + L1MC2 LINE L1 4332 6760 -2 224 239 64 0 chr4 136302344 136302453 -47986209 + (TTTAA)n Simple_repeat Simple_repeat 3 118 0 28 0 0 0 chr4 136303323 136303351 -47985311 + AT_rich Low_complexity Low_complexity 1 28 0 2421 71 0 10 chr4 136303844 136304153 -47984509 + AluY SINE Alu 3 308 -3 872 299 75 45 chr4 136304233 136304894 -47983768 - L2 LINE L2 0 3313 2626 643 335 72 29 chr4 136304901 136305247 -47983415 - MLT1I LTR MaLR -2 407 47 1031 271 111 19 chr4 136305268 136305682 -47982980 - L2 LINE L2 -694 2620 2169 3121 181 3 2 chr4 136306112 136306686 -47981976 - L1PB4 LINE L1 -5 6151 5577 27 0 0 0 chr4 136306813 136306840 -47981822 + AT_rich Low_complexity Low_complexity 1 27 0 2255 122 0 0 chr4 136306858 136307154 -47981508 - AluSx SINE Alu -16 296 1 365 196 29 29 chr4 136307388 136307400 -47981262 - ERVL LTR ERVL -3784 1980 1969 2020 125 0 33 chr4 136307400 136307703 -47980959 - AluSq SINE Alu -20 293 1 365 196 29 29 chr4 136307703 136307792 -47980870 - ERVL LTR ERVL -3794 1970 1879 186 43 0 0 chr4 136308036 136308059 -47980603 + (T)n Simple_repeat Simple_repeat 1 23 0 43204 28 21 1 chr4 136308059 136314088 -47974574 - L1HS LINE L1 0 6155 3 683 273 99 53 chr4 136315810 136316184 -47972478 - MLT2C1 LTR ERVL -4 393 3 647 193 7 7 chr4 136316184 136316319 -47972343 - ERVL-C1 LTR ERVL -6 5758 5624 830 214 13 0 chr4 136316322 136316476 -47972186 + ERVL LTR ERVL 4867 5022 -742 7254 215 69 41 chr4 136316476 136319397 -47969265 - ERVL-C1 LTR ERVL -142 5622 2490 1888 274 2 0 chr4 136319384 136319822 -47968840 - ERVL-C1 LTR ERVL -3604 2160 1722 * 1597 174 0 22 chr4 136320058 136320333 -47968329 + AluJb SINE Alu 1 269 -43 222 37 0 0 chr4 136320341 136320368 -47968294 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1992 287 26 5 chr4 136320368 136320940 -47967722 - ERVL-C1 LTR ERVL -4069 1695 1112 1865 269 94 12 chr4 136320946 136321523 -47967139 - ERVL-C1 LTR ERVL -5139 625 2 638 258 37 55 chr4 136321524 136321795 -47966867 - MLT2C1 LTR ERVL 0 397 132 709 143 0 0 chr4 136321801 136321906 -47966756 - AluSq/x SINE Alu -208 105 1 267 414 66 0 chr4 136322175 136322373 -47966289 + MIR SINE MIR 2 212 -50 2189 92 0 3 chr4 136322983 136323294 -47965368 + AluY SINE Alu 1 310 0 25 90 0 0 chr4 136323325 136323392 -47965270 + AT_rich Low_complexity Low_complexity 1 67 0 921 273 106 47 chr4 136323500 136323991 -47964671 + MLT2B1 LTR ERVL 1 520 0 6513 241 61 10 chr4 136323992 136324623 -47964039 + ERVL LTR ERVL 2 599 -5165 6744 70 22 3 chr4 136324623 136325742 -47962920 - L1PA6 LINE L1 -2 6152 5028 6513 241 61 10 chr4 136325742 136327116 -47961546 + ERVL LTR ERVL 599 2143 -3621 428 236 13 1 chr4 136327117 136327266 -47961396 + ERVL LTR ERVL 2419 2589 -3175 1473 216 20 7 chr4 136327277 136327578 -47961084 - MER7A DNA MER2_type -1 345 43 375 278 0 0 chr4 136327604 136327694 -47960968 + L1MC4 LINE L1 6614 6703 -1339 515 221 73 29 chr4 136327734 136327870 -47960792 + ERVL LTR ERVL 2590 2731 -3033 1290 176 18 48 chr4 136327927 136328199 -47960463 + MER21A LTR ERV1 1 264 -667 2032 229 75 2 chr4 136328204 136328628 -47960034 + MER21A LTR ERV1 376 830 -101 3170 153 4 0 chr4 136330368 136330877 -47957785 - MER75 DNA T2_type 0 514 4 2037 201 10 0 chr4 136331579 136331971 -47956691 + MER57A LTR ERV1 8 403 0 1049 158 17 11 chr4 136331971 136332148 -47956514 + MER57A-int LTR ERV1 1 178 -7359 1241 149 110 4 chr4 136332164 136332392 -47956270 - MER57-int LTR ERV1 -640 6897 6646 1393 245 123 42 chr4 136333304 136333785 -47954877 - MLT2B1 LTR ERVL 0 520 1 15847 184 119 15 chr4 136333903 136335740 -47952922 + L1M1 LINE L1 9 1653 -5912 1765 170 3 0 chr4 136335740 136336076 -47952586 + AluSq SINE Alu 1 337 0 15847 184 119 15 chr4 136336076 136337963 -47950699 + L1M1 LINE L1 1653 4109 -3456 676 100 0 0 chr4 136337965 136338055 -47950607 + AluSg/x SINE Alu 200 289 -23 2502 155 34 13 chr4 136338067 136338390 -47950272 + L1MA4A LINE L1 5816 6154 -149 603 0 0 0 chr4 136338390 136338457 -47950205 + (AATAG)n Simple_repeat Simple_repeat 2 68 0 2502 155 34 13 chr4 136338457 136338604 -47950058 + L1MA4A LINE L1 6154 6296 -7 1080 209 84 4 chr4 136339697 136339936 -47948726 - Tigger3(Golem) DNA MER2_type -1 3028 2771 508 184 11 0 chr4 136339932 136340019 -47948643 - Tigger3(Golem) DNA MER2_type -2886 143 56 * 497 297 83 40 chr4 136342096 136342115 -47946547 + L1PA16 LINE L1 10 27 -7554 2897 171 12 62 chr4 136342115 136342759 -47945903 - LTR9 LTR ERV1 0 612 1 497 297 83 40 chr4 136342759 136343066 -47945596 + L1PA16 LINE L1 27 350 -7231 2759 228 21 86 chr4 136343970 136344454 -47944208 + L1PA16 LINE L1 2231 2745 -4839 2178 121 0 6 chr4 136344454 136344768 -47943894 + AluSx SINE Alu 1 312 0 2759 228 21 86 chr4 136344768 136345455 -47943207 + L1PA16 LINE L1 2745 3353 -4231 * 8912 205 18 12 chr4 136345450 136348586 -47940076 + L1PA16 LINE L1 4452 7604 0 21 0 0 0 chr4 136349163 136349184 -47939478 + AT_rich Low_complexity Low_complexity 1 21 0 289 244 11 11 chr4 136349211 136349301 -47939361 + (TA)n Simple_repeat Simple_repeat 2 91 0 3051 128 38 4 chr4 136349790 136350292 -47938370 + LTR57-int LTR ERVL 303 821 -4522 788 244 12 0 chr4 136350431 136350599 -47938063 + MER87 LTR ERV1 372 541 0 11523 252 33 21 chr4 136350656 136355926 -47932736 + L1PA15 LINE L1 21 5607 -1977 4080 11 0 0 chr4 136355926 136356387 -47932275 + L1PA2 LINE L1 5690 6150 -5 11523 252 33 21 chr4 136356387 136356698 -47931964 + L1PA15 LINE L1 5607 5913 -1671 2093 53 0 8 chr4 136356698 136356962 -47931700 + AluY SINE Alu 1 262 -49 284 0 54 0 chr4 136356983 136357063 -47931599 + AluY SINE Alu 241 322 0 5451 127 17 3 chr4 136357063 136358748 -47929914 + L1PA15 LINE L1 5907 7601 -2 1211 233 14 20 chr4 136358763 136359059 -47929603 + AluJb SINE Alu 12 305 -7 204 40 0 0 chr4 136359562 136359587 -47929075 + (A)n Simple_repeat Simple_repeat 1 25 0 1650 247 102 31 chr4 136359846 136360424 -47928238 + MLT1E3 LTR MaLR 6 624 0 24 0 0 0 chr4 136360726 136360750 -47927912 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr4 136361447 136361475 -47927187 + AT_rich Low_complexity Low_complexity 1 28 0 231 103 0 0 chr4 136362529 136362568 -47926094 + (CA)n Simple_repeat Simple_repeat 2 40 0 2051 101 14 0 chr4 136362818 136363126 -47925536 - AluSp SINE Alu 0 316 5 33 56 0 0 chr4 136363131 136363185 -47925477 + AT_rich Low_complexity Low_complexity 1 54 0 905 280 126 19 chr4 136363464 136363942 -47924720 - L1MCc LINE L1 -5872 551 23 25 51 0 0 chr4 136364273 136364312 -47924350 + AT_rich Low_complexity Low_complexity 1 39 0 2897 143 13 11 chr4 136364387 136364924 -47923738 + L1MA4 LINE L1 5762 6299 -1 21 0 0 0 chr4 136365621 136365642 -47923020 + AT_rich Low_complexity Low_complexity 1 21 0 2206 81 0 0 chr4 136365964 136366247 -47922415 + AluY SINE Alu 1 283 -28 354 23 0 0 chr4 136366247 136366290 -47922372 + (CA)n Simple_repeat Simple_repeat 2 44 0 203 77 0 26 chr4 136366330 136366369 -47922293 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 7785 16 0 0 chr4 136366369 136367745 -47920917 - L1PA3 LINE L1 -13 6142 4767 822 81 9 0 chr4 136367858 136367969 -47920693 + AluY SINE Alu 190 301 -10 1074 129 59 11 chr4 136368604 136368790 -47919872 - L1PA16 LINE L1 -9 6157 5963 2129 121 3 3 chr4 136369003 136369293 -47919369 + AluSg SINE Alu 5 294 -16 714 243 77 83 chr4 136371278 136371603 -47917059 + MLT1D LTR MaLR 181 503 -2 24 77 0 0 chr4 136372335 136372387 -47916275 + AT_rich Low_complexity Low_complexity 1 52 0 22 35 0 0 chr4 136373648 136373677 -47914985 + AT_rich Low_complexity Low_complexity 1 29 0 1573 193 17 14 chr4 136373779 136374074 -47914588 - AluJo SINE Alu -16 296 1 21 0 0 0 chr4 136374084 136374105 -47914557 + AT_rich Low_complexity Low_complexity 1 21 0 216 210 29 51 chr4 136374741 136374879 -47913783 + (TTATA)n Simple_repeat Simple_repeat 5 139 0 399 366 29 29 chr4 136374986 136375267 -47913395 + L2 LINE L2 1202 1482 -1832 15260 72 9 1 chr4 136375348 136378218 -47910444 + L1PA6 LINE L1 3269 6139 -15 189 0 0 0 chr4 136378221 136378242 -47910420 + (CA)n Simple_repeat Simple_repeat 2 22 0 285 254 15 0 chr4 136378247 136378314 -47910348 - MLT1I LTR MaLR -52 357 290 261 316 80 32 chr4 136378378 136378628 -47910034 + L2 LINE L2 1700 1961 -1353 337 94 0 0 chr4 136379668 136379721 -47908941 + L1MA9 LINE L1 6260 6312 0 2291 67 0 16 chr4 136380089 136380402 -47908260 + AluY SINE Alu 1 308 -3 22 56 0 0 chr4 136381077 136381113 -47907549 + AT_rich Low_complexity Low_complexity 1 36 0 28 48 0 0 chr4 136381221 136381263 -47907399 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr4 136381606 136381627 -47907035 + AT_rich Low_complexity Low_complexity 1 21 0 247 325 9 48 chr4 136381645 136381873 -47906789 + L1ME LINE L1 5667 5885 -236 22 0 0 0 chr4 136381874 136381896 -47906766 + AT_rich Low_complexity Low_complexity 1 22 0 202 399 30 8 chr4 136382505 136382638 -47906024 + L2 LINE L2 2918 3053 -219 277 176 12 35 chr4 136383259 136383344 -47905318 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 410 355 89 53 chr4 136383593 136384066 -47904596 + L2 LINE L2 2804 3293 -20 633 260 88 3 chr4 136385078 136385334 -47903328 - MER2 DNA MER2_type 0 345 4 3122 215 40 68 chr4 136386479 136388328 -47900334 - L1MB3 LINE L1 -8 6175 4379 553 86 5 75 chr4 136388332 136388518 -47900144 + (TATAA)n Simple_repeat Simple_repeat 1 173 0 455 101 3 80 chr4 136388573 136388964 -47899698 + (CATAT)n Simple_repeat Simple_repeat 1 360 0 2262 82 7 3 chr4 136389098 136389404 -47899258 - AluY SINE Alu -4 307 1 22 35 0 0 chr4 136389437 136389466 -47899196 + AT_rich Low_complexity Low_complexity 1 29 0 578 249 69 56 chr4 136389481 136389714 -47898948 + L1MC4 LINE L1 6855 7090 -952 1015 231 42 45 chr4 136389727 136389991 -47898671 - MSTD LTR MaLR 0 396 134 250 233 27 0 chr4 136389991 136390064 -47898598 + L1MC4 LINE L1 7967 8041 -1 24 0 0 0 chr4 136390079 136390103 -47898559 + AT_rich Low_complexity Low_complexity 1 24 0 29 47 0 0 chr4 136390199 136390242 -47898420 + AT_rich Low_complexity Low_complexity 1 43 0 288 0 0 0 chr4 136390964 136390996 -47897666 + (CA)n Simple_repeat Simple_repeat 2 33 0 1725 161 9 25 chr4 136391599 136391916 -47896746 - AluJb SINE Alu 0 312 1 327 329 121 18 chr4 136391920 136392200 -47896462 + L2 LINE L2 1991 2299 -1015 21 0 0 0 chr4 136392610 136392631 -47896031 + AT_rich Low_complexity Low_complexity 1 21 0 473 101 0 0 chr4 136392646 136392715 -47895947 - AluSp SINE Alu -14 299 231 1169 114 12 0 chr4 136392715 136392881 -47895781 - AluSp SINE Alu -143 170 3 299 272 0 54 chr4 136393141 136393233 -47895429 + L2 LINE L2 3186 3272 0 32 26 0 0 chr4 136393411 136393450 -47895212 + AT_rich Low_complexity Low_complexity 1 39 0 1925 135 21 0 chr4 136393451 136393733 -47894929 - AluSx SINE Alu -24 288 1 465 186 12 0 chr4 136394960 136395046 -47893616 + ERVL-B1 LTR ERVL 1593 1679 -4085 804 216 75 130 chr4 136395048 136395464 -47893198 - MLT1A1 LTR MaLR -1 364 3 1438 261 156 5 chr4 136395465 136395883 -47892779 + ERVL-B1 LTR ERVL 1636 2116 -3538 1800 133 0 11 chr4 136395884 136396155 -47892507 + AluJb SINE Alu 28 295 -17 4325 179 11 5 chr4 136396168 136396910 -47891752 + ERVL-B1 LTR ERVL 3222 3967 -1797 3055 174 33 48 chr4 136396906 136397600 -47891062 + ERVL-B1 LTR ERVL 5066 5749 -15 * 1473 202 128 52 chr4 136397608 136398054 -47890608 + MLT2B1 LTR ERVL 1 480 -40 1730 201 15 3 chr4 136398082 136398425 -47890237 - MER7A DNA MER2_type -1 345 1 784 310 35 4 chr4 136399075 136399304 -47889358 + MIR SINE MIR 1 236 -26 26 30 0 0 chr4 136399891 136399924 -47888738 + AT_rich Low_complexity Low_complexity 1 33 0 1648 164 4 7 chr4 136400056 136400331 -47888331 + AluJb SINE Alu 1 274 -38 620 167 0 0 chr4 136400542 136400656 -47888006 + FRAM SINE Alu 60 173 -3 1859 138 34 0 chr4 136400672 136400963 -47887699 + AluSp SINE Alu 1 301 -12 25 31 0 0 chr4 136401059 136401091 -47887571 + AT_rich Low_complexity Low_complexity 1 32 0 731 94 9 0 chr4 136401490 136401596 -47887066 - L1PA8 LINE L1 -8 6164 6058 261 307 87 29 chr4 136401663 136401904 -47886758 - L1MEc LINE L1 -2373 3842 3588 323 301 91 58 chr4 136402399 136402970 -47885692 - L1MEc LINE L1 -4578 1818 1229 344 270 106 67 chr4 136402983 136403313 -47885349 - L1MEc LINE L1 -5228 1168 826 346 314 87 49 chr4 136403343 136403431 -47885231 - L1M4 LINE L1 -963 5183 5100 2181 113 13 0 chr4 136403431 136403731 -47884931 - AluSx SINE Alu -8 304 1 346 314 87 49 chr4 136403731 136404008 -47884654 - L1M4 LINE L1 -1046 5100 4804 1851 168 3 3 chr4 136404827 136405137 -47883525 + AluSx SINE Alu 2 311 -1 23 54 0 0 chr4 136405174 136405211 -47883451 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr4 136407984 136408019 -47880643 + AT_rich Low_complexity Low_complexity 1 35 0 267 349 74 29 chr4 136408291 136408466 -47880196 - MER5A DNA MER1_type -5 184 2 678 328 58 3 chr4 136408695 136409006 -47879656 + MLT1J LTR MaLR 4 331 -180 182 322 43 52 chr4 136409010 136409125 -47879537 + L2 LINE L2 3200 3313 0 7354 123 164 21 chr4 136409707 136411191 -47877471 + pTR5 LTR ERV1 742 2438 0 22 56 0 0 chr4 136411511 136411547 -47877115 + AT_rich Low_complexity Low_complexity 1 36 0 183 299 134 8 chr4 136411687 136411821 -47876841 + L2 LINE L2 1965 2115 -1199 369 296 38 23 chr4 136412643 136412775 -47875887 - MER5B DNA MER1_type -24 154 21 351 0 0 0 chr4 136413690 136413729 -47874933 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr4 136414145 136414166 -47874496 + AT_rich Low_complexity Low_complexity 1 21 0 1798 278 46 13 chr4 136414778 136415433 -47873229 - L1MB7 LINE L1 -3 6180 5520 238 271 99 88 chr4 136415476 136415657 -47873005 + MLT1J LTR MaLR 347 529 -66 322 380 32 0 chr4 136417464 136417651 -47871011 + MIR SINE MIR 70 262 0 2194 71 9 52 chr4 136418111 136418435 -47870227 - AluY SINE Alu -1 310 1 22 35 0 0 chr4 136419432 136419461 -47869201 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 136419629 136419651 -47869011 + AT_rich Low_complexity Low_complexity 1 22 0 218 277 72 24 chr4 136419675 136419758 -47868904 + L2 LINE L2 2694 2780 -534 24 0 0 0 chr4 136420781 136420805 -47867857 + AT_rich Low_complexity Low_complexity 1 24 0 216 250 19 9 chr4 136421333 136421441 -47867221 + (TA)n Simple_repeat Simple_repeat 1 109 0 1182 186 71 125 chr4 136421647 136422072 -47866590 - L1MC4a LINE L1 -1049 6759 6358 21 57 0 0 chr4 136422075 136422110 -47866552 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 136422828 136422849 -47865813 + AT_rich Low_complexity Low_complexity 1 21 0 456 84 127 0 chr4 136424802 136424873 -47863789 - MADE1 DNA Mariner 0 80 1 203 32 65 0 chr4 136425239 136425270 -47863392 + A-rich Low_complexity Low_complexity 2 34 0 1727 180 0 10 chr4 136426087 136426387 -47862275 + AluJb SINE Alu 1 297 -15 207 0 0 0 chr4 136426547 136426570 -47862092 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 183 354 24 12 chr4 136426727 136426809 -47861853 - L2 LINE L2 -4 3268 3186 21 0 0 0 chr4 136427344 136427365 -47861297 + AT_rich Low_complexity Low_complexity 1 21 0 466 316 17 6 chr4 136428084 136428258 -47860404 + MLT1H LTR MaLR 46 221 -328 1490 225 77 18 chr4 136429536 136429976 -47858686 - MLT1C LTR MaLR 0 467 2 625 209 0 0 chr4 136430537 136430647 -47858015 - FRAM SINE Alu -66 110 1 770 191 7 0 chr4 136430670 136430817 -47857845 - FRAM SINE Alu -30 146 1 33 43 0 0 chr4 136431232 136431279 -47857383 + AT_rich Low_complexity Low_complexity 1 47 0 26 0 0 0 chr4 136431464 136431490 -47857172 + AT_rich Low_complexity Low_complexity 1 26 0 27 0 0 0 chr4 136433224 136433251 -47855411 + AT_rich Low_complexity Low_complexity 1 27 0 418 258 70 100 chr4 136434873 136435385 -47853277 - L1M4 LINE L1 -1801 4345 3849 32 43 0 0 chr4 136435891 136435937 -47852725 + AT_rich Low_complexity Low_complexity 1 46 0 22 56 0 0 chr4 136436671 136436707 -47851955 + AT_rich Low_complexity Low_complexity 1 36 0 426 319 76 49 chr4 136436894 136437036 -47851626 - L2 LINE L2 -5 3308 3171 180 0 0 0 chr4 136437036 136437056 -47851606 + (TG)n Simple_repeat Simple_repeat 2 21 0 426 319 76 49 chr4 136437056 136437321 -47851341 - L2 LINE L2 -142 3171 2890 1388 287 41 59 chr4 136437376 136437869 -47850793 - L2 LINE L2 -522 2792 2291 1736 132 33 11 chr4 136437869 136438142 -47850520 + AluSq SINE Alu 2 280 -33 1255 62 17 0 chr4 136438151 136438328 -47850334 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1388 287 41 59 chr4 136438328 136438482 -47850180 - L2 LINE L2 -1031 2283 2147 989 236 80 101 chr4 136438485 136439037 -47849625 + MLT1H LTR MaLR 1 540 -9 21 0 0 0 chr4 136439041 136439062 -47849600 + AT_rich Low_complexity Low_complexity 1 21 0 619 341 26 4 chr4 136439069 136439298 -47849364 - L2 LINE L2 -1187 2127 1894 24 32 0 0 chr4 136439378 136439409 -47849253 + AT_rich Low_complexity Low_complexity 1 31 0 24 77 0 0 chr4 136441264 136441316 -47847346 + AT_rich Low_complexity Low_complexity 1 52 0 309 330 76 106 chr4 136442149 136442413 -47846249 - L2 LINE L2 0 3272 3017 303 378 117 10 chr4 136442490 136442852 -47845810 + L2 LINE L2 2633 3080 -233 2079 261 101 11 chr4 136442876 136443542 -47845120 + MER21B LTR ERV1 14 739 -124 195 280 98 68 chr4 136443640 136443718 -47844944 + L2 LINE L2 3178 3263 -50 2433 144 19 25 chr4 136443718 136444149 -47844513 + MSTA LTR MaLR 1 428 0 195 280 98 68 chr4 136444149 136444202 -47844460 + L2 LINE L2 3263 3313 0 21 36 0 0 chr4 136444264 136444292 -47844370 + AT_rich Low_complexity Low_complexity 1 28 0 25 75 0 0 chr4 136444837 136444890 -47843772 + AT_rich Low_complexity Low_complexity 1 53 0 586 295 51 57 chr4 136445045 136445774 -47842888 + L1M4c LINE L1 1074 1880 -4502 1120 257 97 28 chr4 136445802 136446761 -47841901 + L1M4c LINE L1 2072 3057 -3325 25 65 0 0 chr4 136447319 136447365 -47841297 + AT_rich Low_complexity Low_complexity 1 46 0 2220 92 3 0 chr4 136447678 136447970 -47840692 + AluSp SINE Alu 1 293 -20 37 52 0 0 chr4 136447970 136448028 -47840634 + AT_rich Low_complexity Low_complexity 1 58 0 336 327 67 35 chr4 136448518 136448830 -47839832 + L1ME LINE L1 5465 5786 -335 757 187 0 0 chr4 136448838 136448972 -47839690 - AluJo SINE Alu -176 136 3 26 30 0 0 chr4 136451011 136451044 -47837618 + AT_rich Low_complexity Low_complexity 1 33 0 905 290 88 12 chr4 136451375 136451703 -47836959 - MLT1G LTR MaLR -237 353 1 232 336 9 36 chr4 136451760 136451870 -47836792 - MIR3 SINE MIR -7 201 95 201 147 0 0 chr4 136451878 136451912 -47836750 + (CATA)n Simple_repeat Simple_repeat 3 36 0 34 24 0 0 chr4 136451952 136451993 -47836669 + AT_rich Low_complexity Low_complexity 1 41 0 2878 196 18 10 chr4 136452013 136452517 -47836145 + MLT2B3 LTR ERVL 8 515 -39 210 221 11 53 chr4 136452517 136452612 -47836050 + (TA)n Simple_repeat Simple_repeat 2 92 0 2147 170 10 12 chr4 136452621 136453053 -47835609 + Tigger2 DNA MER2_type 1 2718 0 524 130 11 0 chr4 136453101 136453193 -47835469 + (TAGA)n Simple_repeat Simple_repeat 2 94 0 1852 260 72 26 chr4 136453583 136454287 -47834375 + L1MEc LINE L1 391 1127 -5269 21 0 0 0 chr4 136454340 136454361 -47834301 + AT_rich Low_complexity Low_complexity 1 21 0 215 294 15 15 chr4 136454843 136454911 -47833751 + MIR SINE MIR 85 152 -56 268 211 0 0 chr4 136456246 136456303 -47832359 + MER52A LTR ERV1 2 58 -1697 4297 228 171 5 chr4 136456640 136457816 -47830846 + MER52A LTR ERV1 185 1512 -243 256 182 36 0 chr4 136457814 136457869 -47830793 + MER52C LTR ERV1 1222 1278 0 * 21 0 0 0 chr4 136458154 136458175 -47830487 + AT_rich Low_complexity Low_complexity 1 21 0 757 190 63 0 chr4 136458587 136458745 -47829917 + FAM SINE Alu 1 168 -7 24 32 0 0 chr4 136459120 136459151 -47829511 + AT_rich Low_complexity Low_complexity 1 31 0 553 113 0 0 chr4 136459491 136459571 -47829091 + MADE1 DNA Mariner 1 80 0 44 20 0 0 chr4 136460194 136460245 -47828417 + AT_rich Low_complexity Low_complexity 1 51 0 36 87 0 0 chr4 136460345 136460437 -47828225 + AT_rich Low_complexity Low_complexity 1 92 0 27 29 0 0 chr4 136460748 136460782 -47827880 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr4 136460909 136460930 -47827732 + AT_rich Low_complexity Low_complexity 1 21 0 288 316 126 47 chr4 136460932 136461147 -47827515 - MIR SINE MIR 0 262 31 732 175 91 7 chr4 136461185 136461328 -47827334 + AluSg/x SINE Alu 135 289 -21 245 73 0 24 chr4 136461391 136461432 -47827230 + (TA)n Simple_repeat Simple_repeat 2 41 0 23 78 0 0 chr4 136461483 136461534 -47827128 + AT_rich Low_complexity Low_complexity 1 51 0 2014 125 23 0 chr4 136461582 136461886 -47826776 - AluSx SINE Alu -1 311 1 748 231 16 84 chr4 136462050 136462358 -47826304 - L1ME1 LINE L1 -96 6070 5784 249 224 52 0 chr4 136462358 136462416 -47826246 + MLT1A1 LTR MaLR 19 79 -286 582 218 8 0 chr4 136462474 136462607 -47826055 - L1ME1 LINE L1 -668 5498 5365 2993 170 36 12 chr4 136463160 136463741 -47824921 - LTR49 LTR ERV1 0 595 1 3146 193 37 9 chr4 136464638 136465281 -47823381 + MER67B LTR ERV1 1 661 0 235 284 21 0 chr4 136465502 136465597 -47823065 - L1MC4 LINE L1 -1332 6710 6614 243 170 0 0 chr4 136465608 136465655 -47823007 + (TA)n Simple_repeat Simple_repeat 2 48 0 * 315 113 0 0 chr4 136465654 136465707 -47822955 + (GA)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr4 136465917 136465939 -47822723 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr4 136466646 136466667 -47821995 + (TCTA)n Simple_repeat Simple_repeat 1 21 0 27 29 0 0 chr4 136466669 136466703 -47821959 + AT_rich Low_complexity Low_complexity 1 34 0 464 88 59 29 chr4 136466703 136466873 -47821789 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 1759 252 19 80 chr4 136466891 136468219 -47820443 + L1MA8 LINE L1 9 2517 -4520 1942 163 129 5 chr4 136468235 136468616 -47820046 + MSTA LTR MaLR 1 428 0 1200 137 12 143 chr4 136468616 136468944 -47819718 + MSTA-int LTR MaLR 2 286 -1365 3639 201 5 30 chr4 136468957 136469703 -47818959 + MSTA-int LTR MaLR 417 1144 -436 352 166 0 26 chr4 136469704 136469788 -47818874 + L1MA8 LINE L1 3801 3882 -3224 2285 117 67 8 chr4 136469799 136470158 -47818504 + MLT2A1 LTR ERVL 1 380 -64 3210 166 29 21 chr4 136470217 136470843 -47817819 + L1MA8 LINE L1 6449 7079 -172 4101 209 76 10 chr4 136471693 136473260 -47815402 + MER52A LTR ERV1 1 1755 0 21 0 0 0 chr4 136475301 136475322 -47813340 + AT_rich Low_complexity Low_complexity 1 21 0 1617 249 17 8 chr4 136476039 136476397 -47812265 + MSTD LTR MaLR 1 361 -35 972 135 7 0 chr4 136476397 136476563 -47812099 - AluSc SINE Alu 0 306 140 371 276 87 27 chr4 136477158 136477343 -47811319 + LTR33 LTR ERVL 323 518 -3 286 327 9 9 chr4 136477355 136477465 -47811197 + L2 LINE L2 2469 2578 -736 414 329 110 21 chr4 136477652 136477870 -47810792 + L2 LINE L2 2575 2817 -497 1931 159 0 3 chr4 136477870 136478172 -47810490 + AluSx SINE Alu 1 301 -11 414 329 110 21 chr4 136478172 136478190 -47810472 + L2 LINE L2 2817 2832 -482 473 284 65 30 chr4 136478762 136478963 -47809699 - MER63A DNA MER1_type -2 208 1 6156 82 3 11 chr4 136478988 136479836 -47808826 + L1PA10 LINE L1 5327 6168 0 697 204 45 40 chr4 136480115 136480291 -47808371 + MER5B DNA MER1_type 1 177 -1 332 183 43 17 chr4 136480933 136481048 -47807614 + (TCTA)n Simple_repeat Simple_repeat 1 118 0 23 33 0 0 chr4 136481159 136481189 -47807473 + AT_rich Low_complexity Low_complexity 1 30 0 625 181 72 51 chr4 136481914 136482245 -47806417 + Zaphod DNA AcHobo 652 989 -3042 735 199 39 85 chr4 136482293 136482568 -47806094 + Zaphod DNA AcHobo 3597 3858 -173 579 254 56 22 chr4 136482568 136482769 -47805893 - MLT1C LTR MaLR -1 466 278 662 185 31 0 chr4 136482785 136482915 -47805747 - L1P LINE L1 -1134 5012 4879 717 246 0 30 chr4 136482916 136483083 -47805579 - AluJb SINE Alu -15 297 136 1140 194 21 0 chr4 136483086 136483343 -47805319 - L1 LINE L1 -1260 4886 4626 309 277 32 0 chr4 136483377 136483471 -47805191 + Zaphod DNA AcHobo 3934 4030 -1 5321 183 10 21 chr4 136483569 136485646 -47803016 - L1MA4 LINE L1 -1 6299 4246 314 102 34 0 chr4 136485742 136485801 -47802861 + T-rich Low_complexity Low_complexity 3 63 0 8107 203 55 33 chr4 136486138 136487045 -47801617 - L1MC3 LINE L1 0 7785 6899 249 33 0 0 chr4 136487045 136487075 -47801587 + (TG)n Simple_repeat Simple_repeat 2 31 0 8107 203 55 33 chr4 136487075 136487218 -47801444 - L1MC3 LINE L1 -886 6899 6761 1950 86 79 0 chr4 136487218 136487498 -47801164 + AluSg SINE Alu 1 302 -8 8107 203 55 33 chr4 136487498 136488050 -47800612 - L1MC3 LINE L1 -1024 6761 6127 2240 60 0 7 chr4 136488050 136488376 -47800286 + AluY SINE Alu 1 324 0 8107 203 55 33 chr4 136488376 136488774 -47799888 - L1MC3 LINE L1 -1658 6127 5739 22 80 0 0 chr4 136488775 136488825 -47799837 + AT_rich Low_complexity Low_complexity 1 50 0 2022 189 65 0 chr4 136489450 136489852 -47798810 + MSTC LTR MaLR 1 428 0 24 32 0 0 chr4 136490713 136490744 -47797918 + AT_rich Low_complexity Low_complexity 1 31 0 194 352 45 11 chr4 136490819 136490907 -47797755 - MIR SINE MIR -169 93 3 294 73 36 18 chr4 136492675 136492690 -47795972 - Alu SINE Alu -1 299 286 387 0 0 0 chr4 136492690 136492733 -47795929 + (TATG)n Simple_repeat Simple_repeat 2 44 0 294 73 36 18 chr4 136492733 136492772 -47795890 - Alu SINE Alu -14 286 244 2035 90 0 23 chr4 136492772 136493071 -47795591 - AluY SINE Alu -19 292 1 621 132 182 16 chr4 136493103 136493224 -47795438 - FLAM_C SINE Alu 0 143 3 540 200 0 0 chr4 136494012 136494127 -47794535 + CT-rich Low_complexity Low_complexity 4 118 0 1219 188 128 21 chr4 136494127 136494409 -47794253 - AluJb SINE Alu 0 312 1 328 266 44 35 chr4 136494571 136494684 -47793978 + MIR SINE MIR 11 124 -138 25 0 0 0 chr4 136495006 136495031 -47793631 + AT_rich Low_complexity Low_complexity 1 25 0 22 56 0 0 chr4 136495277 136495313 -47793349 + AT_rich Low_complexity Low_complexity 1 36 0 236 290 16 0 chr4 136495519 136495581 -47793081 + GA-rich Low_complexity Low_complexity 3 65 0 645 181 39 0 chr4 136496116 136496243 -47792419 + AluJb SINE Alu 5 136 -176 926 220 30 5 chr4 136496243 136496443 -47792219 + AluJb SINE Alu 81 285 -27 21 0 0 0 chr4 136547726 136547747 -47740915 + AT_rich Low_complexity Low_complexity 1 21 0 411 98 0 0 chr4 136547862 136547923 -47740739 + (CA)n Simple_repeat Simple_repeat 2 62 0 238 300 0 44 chr4 136549278 136549368 -47739294 - L2 LINE L2 -49 3264 3179 275 406 11 0 chr4 136549739 136549926 -47738736 - L2 LINE L2 -583 2731 2543 197 352 102 31 chr4 136550201 136550397 -47738265 - L2 LINE L2 -2919 395 186 1849 123 50 17 chr4 136551152 136551453 -47737209 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr4 136551678 136551700 -47736962 + AT_rich Low_complexity Low_complexity 1 22 0 734 139 78 0 chr4 136552700 136552829 -47735833 + MER85 DNA T2_type 1 139 0 347 253 29 23 chr4 136553813 136553987 -47734675 + T-rich Low_complexity Low_complexity 1 175 0 1149 97 0 0 chr4 136556967 136557132 -47731530 + (TA)n Simple_repeat Simple_repeat 2 166 0 375 119 68 0 chr4 136557321 136557380 -47731282 - MER66A LTR ERV1 -146 332 270 22 21 0 62 chr4 136559053 136559101 -47729561 + AT_rich Low_complexity Low_complexity 1 45 0 400 164 78 35 chr4 136560147 136560263 -47728399 + L1MC3 LINE L1 6905 7025 -760 2225 249 42 24 chr4 136560304 136561070 -47727592 + L1MD3 LINE L1 6979 7980 -15 1349 215 85 65 chr4 136561174 136561680 -47726982 + MLT2B1 LTR ERVL 5 520 0 517 259 73 57 chr4 136561686 136561987 -47726675 + L1MC4 LINE L1 7624 7929 -113 225 287 78 35 chr4 136562610 136562725 -47725937 + LTR16C LTR ERVL 52 171 -320 228 297 39 55 chr4 136562861 136562989 -47725673 + LTR16A1 LTR ERVL 330 455 -2 297 385 69 44 chr4 136564251 136564815 -47723847 - L2 LINE L2 -574 2740 2163 1995 148 0 0 chr4 136565237 136565540 -47723122 + AluSx SINE Alu 1 303 -9 2703 187 68 50 chr4 136565598 136565872 -47722790 + L1MC3 LINE L1 6709 6977 -808 1712 164 11 4 chr4 136565872 136566208 -47722454 + AluSx SINE Alu 1 338 0 2703 187 68 50 chr4 136566208 136566599 -47722063 + L1MC3 LINE L1 6977 7387 -398 22 0 0 0 chr4 136567571 136567593 -47721069 + AT_rich Low_complexity Low_complexity 1 22 0 2673 164 8 11 chr4 136567597 136568065 -47720597 - MER67C LTR ERV1 -66 644 178 1209 216 71 22 chr4 136568067 136568185 -47720477 + AluJo SINE Alu 1 112 -200 240 35 0 0 chr4 136568185 136568214 -47720448 + (CA)n Simple_repeat Simple_repeat 2 30 0 1209 216 71 22 chr4 136568214 136568364 -47720298 + AluJo SINE Alu 112 282 -30 1898 153 85 28 chr4 136568402 136568800 -47719862 + L1MA3 LINE L1 5885 6305 0 558 172 70 8 chr4 136568820 136568948 -47719714 - MER67C LTR ERV1 -522 188 53 264 31 0 0 chr4 136568961 136568993 -47719669 - L1PA16 LINE L1 -10 6156 6125 957 187 42 6 chr4 136569014 136569233 -47719429 - L1PA16 LINE L1 -10 6158 5941 280 320 44 44 chr4 136569979 136570234 -47718428 - L1ME LINE L1 -305 5865 5610 712 215 0 0 chr4 136570315 136570445 -47718217 - FLAM_C SINE Alu -3 130 1 492 333 92 24 chr4 136570985 136571442 -47717220 - MLT1L LTR MaLR -13 602 115 245 364 100 29 chr4 136571740 136572149 -47716513 - L2 LINE L2 -840 2474 2037 28 0 0 0 chr4 136572480 136572508 -47716154 + AT_rich Low_complexity Low_complexity 1 28 0 933 322 107 20 chr4 136573160 136573619 -47715043 - REP3 LTR ERV -54 508 10 304 294 39 10 chr4 136576734 136576836 -47711826 - L2 LINE L2 0 3272 3168 300 157 0 0 chr4 136576907 136576958 -47711704 + L1PA16 LINE L1 6107 6157 -9 198 191 0 0 chr4 136578342 136578389 -47710273 + T-rich Low_complexity Low_complexity 1 47 0 1871 166 0 0 chr4 136578828 136579130 -47709532 - AluJb SINE Alu -10 302 1 23 33 0 0 chr4 136581168 136581198 -47707464 + AT_rich Low_complexity Low_complexity 1 30 0 1580 218 40 6 chr4 136582834 136583187 -47705475 + MLT1A1 LTR MaLR 1 365 0 242 364 66 16 chr4 136584590 136584711 -47703951 - MIR SINE MIR -62 146 20 341 284 88 65 chr4 136585544 136585759 -47702903 - L1ME LINE L1 -305 5816 5597 264 312 19 25 chr4 136586021 136586178 -47702484 + MIR SINE MIR 100 255 -7 436 300 71 18 chr4 136586239 136586409 -47702253 + MIR SINE MIR 80 258 -4 33 25 0 0 chr4 136586938 136586978 -47701684 + AT_rich Low_complexity Low_complexity 1 40 0 2038 107 3 13 chr4 136589654 136589952 -47698710 + AluY SINE Alu 12 306 -5 206 333 27 13 chr4 136590654 136590729 -47697933 - MER5B DNA MER1_type 0 178 103 220 387 132 15 chr4 136590981 136591185 -47697477 - MIR SINE MIR -34 228 1 1971 128 24 0 chr4 136592011 136592301 -47696361 + AluSx SINE Alu 3 299 -13 651 229 57 6 chr4 136592329 136592486 -47696176 + LTR52 LTR ERVL 1 165 -256 303 176 0 44 chr4 136592495 136592563 -47696099 + L1MC4 LINE L1 6637 6701 -1341 222 91 0 0 chr4 136592762 136592795 -47695867 + (TG)n Simple_repeat Simple_repeat 2 34 0 1986 161 46 19 chr4 136592821 136593238 -47695424 - L1MA8 LINE L1 -5 6286 5859 374 224 13 0 chr4 136593500 136593576 -47695086 - MER50 LTR ERV1 -23 711 635 208 254 0 0 chr4 136595080 136595135 -47693527 + T-rich Low_complexity Low_complexity 1 55 0 2845 42 14 3 chr4 136595139 136595493 -47693169 - L1PA3 LINE L1 0 6155 5798 485 17 0 0 chr4 136595493 136595552 -47693110 + L1PA3 LINE L1 5732 5790 -365 40 37 0 0 chr4 136595633 136595687 -47692975 + AT_rich Low_complexity Low_complexity 1 54 0 318 351 93 0 chr4 136596663 136596868 -47691794 + L2 LINE L2 2316 2539 -775 184 359 0 0 chr4 136597198 136597251 -47691411 + L2 LINE L2 3006 3058 -214 189 94 0 0 chr4 136597271 136597303 -47691359 + (TTTTTG)n Simple_repeat Simple_repeat 5 36 0 184 302 0 0 chr4 136597545 136597598 -47691064 + L2 LINE L2 3261 3313 0 313 263 10 50 chr4 136597790 136597889 -47690773 + MLT1J LTR MaLR 343 437 -74 204 242 0 65 chr4 136598265 136598327 -47690335 + L2 LINE L2 3215 3272 0 813 120 8 0 chr4 136598557 136598681 -47689981 + MSTA LTR MaLR 1 125 -303 2067 162 6 6 chr4 136598681 136599020 -47689642 + MER1B DNA MER1_type 1 339 0 1372 141 87 8 chr4 136599055 136599297 -47689365 + MSTA LTR MaLR 168 428 0 2283 161 19 19 chr4 136599311 136599722 -47688940 + LTR38 LTR ERV1 1 411 -145 388 332 93 19 chr4 136601043 136601257 -47687405 + MIR SINE MIR 33 262 0 351 0 0 0 chr4 136601951 136601990 -47686672 + (CA)n Simple_repeat Simple_repeat 2 40 0 293 351 29 23 chr4 136602792 136602963 -47685699 - MLT1J LTR MaLR -258 253 82 594 324 52 25 chr4 136603198 136603522 -47685140 - LTR16A LTR ERVL -15 435 103 1796 249 94 19 chr4 136603583 136604165 -47684497 - MLT1E2 LTR MaLR 0 626 1 1922 192 111 0 chr4 136605807 136606214 -47682448 + LTR47A LTR ERVL 1 452 0 1661 171 0 34 chr4 136606616 136607034 -47681628 - AluSx SINE Alu 0 408 1 361 239 76 29 chr4 136607124 136607361 -47681301 + L1MC4 LINE L1 7610 7982 -60 21 36 0 0 chr4 136609044 136609072 -47679590 + AT_rich Low_complexity Low_complexity 1 28 0 2022 125 7 0 chr4 136609723 136610020 -47678642 - AluSp SINE Alu -14 299 1 1667 200 82 40 chr4 136610260 136610727 -47677935 + LTR45B LTR ERV1 3 525 0 186 167 0 0 chr4 136610884 136610920 -47677742 + (CATATA)n Simple_repeat Simple_repeat 3 38 0 192 200 0 0 chr4 136610974 136611014 -47677648 + (TA)n Simple_repeat Simple_repeat 2 41 0 563 323 90 58 chr4 136612104 136612907 -47675755 + L1M4 LINE L1 3194 4021 -2125 320 308 128 53 chr4 136613004 136613608 -47675054 + L1M4 LINE L1 4182 4830 -1316 476 178 0 17 chr4 136613705 136613823 -47674839 + GA-rich Low_complexity Low_complexity 3 118 0 318 335 45 11 chr4 136613826 136614005 -47674657 + L1M4 LINE L1 4965 5149 -997 662 223 58 0 chr4 136614645 136614784 -47673878 + FRAM SINE Alu 1 146 -30 20782 174 30 21 chr4 136615313 136619413 -47669249 + L1M1 LINE L1 12 4168 -3397 2710 80 131 181 chr4 136619415 136620293 -47668369 + LTR12 LTR ERV1 1 2435 -3 2273 267 35 100 chr4 136620300 136621906 -47666756 + L1M1 LINE L1 4768 6268 -1297 3774 167 12 5 chr4 136620732 136621389 -47667273 - L1P LINE L1 -2082 4064 3403 5450 129 7 3 chr4 136622011 136622861 -47665801 + L1PA13 LINE L1 5309 6161 -2 * 6927 177 23 19 chr4 136622854 136625135 -47663527 + L1MA3 LINE L1 3775 6061 -244 1474 182 6 50 chr4 136625135 136625454 -47663208 + AluJb SINE Alu 1 305 -7 6927 177 23 19 chr4 136625454 136625700 -47662962 + L1MA3 LINE L1 6061 6305 0 1022 317 88 17 chr4 136625709 136626188 -47662474 + MLT1H LTR MaLR 18 530 -19 433 262 63 31 chr4 136626286 136626477 -47662185 + MIR SINE MIR 52 248 -14 190 313 89 18 chr4 136626651 136626763 -47661899 + L2 LINE L2 3189 3308 -5 201 273 0 0 chr4 136626872 136626916 -47661746 + L2 LINE L2 3219 3262 -10 280 357 76 58 chr4 136627859 136628358 -47660304 - L2 LINE L2 -503 2811 2304 489 224 53 77 chr4 136629903 136630073 -47658589 + MIR SINE MIR 32 197 -65 379 319 75 21 chr4 136630667 136630855 -47657807 - L2 LINE L2 -339 2975 2778 23 0 0 0 chr4 136631747 136631770 -47656892 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 136632309 136632330 -47656332 + AT_rich Low_complexity Low_complexity 1 21 0 1479 62 0 0 chr4 136632762 136632940 -47655722 + AluY SINE Alu 122 299 -12 2247 101 0 7 chr4 136633702 136634009 -47654653 - AluY SINE Alu -6 305 1 364 221 158 11 chr4 136634280 136634375 -47654287 + MLT1J2 LTR MaLR 189 297 -153 22 35 0 0 chr4 136634637 136634666 -47653996 + AT_rich Low_complexity Low_complexity 1 29 0 509 279 75 25 chr4 136634977 136635178 -47653484 + LTR7 LTR ERV1 240 450 0 1305 251 58 23 chr4 136635178 136635609 -47653053 + HERVH LTR ERV1 1 446 -7267 14013 212 21 25 chr4 136635664 136641902 -47646760 + HERVH LTR ERV1 590 6588 -1125 3392 175 21 14 chr4 136642007 136642669 -47645993 + HERVH LTR ERV1 7047 7713 0 622 250 69 25 chr4 136642768 136642972 -47645690 + LTR7 LTR ERV1 238 450 0 1489 237 34 50 chr4 136643597 136643898 -47644764 - L1M4 LINE L1 -1526 4620 4331 2204 103 0 3 chr4 136643898 136644198 -47644464 + AluY SINE Alu 1 299 -12 1489 237 34 50 chr4 136644198 136644461 -47644201 - L1M4 LINE L1 -1815 4331 4065 21 36 0 0 chr4 136645124 136645152 -47643510 + AT_rich Low_complexity Low_complexity 1 28 0 322 314 72 42 chr4 136645891 136646155 -47642507 + MLT1L LTR MaLR 340 611 -4 785 197 9 84 chr4 136647167 136647380 -47641282 + L1M1 LINE L1 17 213 -7352 297 174 0 0 chr4 136647370 136647416 -47641246 + L1M1 LINE L1 479 524 -7041 * 10723 180 28 10 chr4 136647466 136649357 -47639305 + L1M1 LINE L1 526 2450 -5115 3931 255 35 14 chr4 136649403 136650371 -47638291 + Tigger3b DNA MER2_type 244 1231 0 942 258 77 26 chr4 136650382 136650548 -47638114 - L1M4 LINE L1 -1197 4949 4793 869 244 36 101 chr4 136650548 136650962 -47637700 - MLT1B LTR MaLR 0 390 4 942 258 77 26 chr4 136650962 136651248 -47637414 - L1M4 LINE L1 -1353 4793 4474 1265 274 105 30 chr4 136651328 136651955 -47636707 - L1MCc LINE L1 -4954 1469 796 1091 296 61 9 chr4 136652489 136652914 -47635748 - L1MCc LINE L1 -5947 476 30 2896 323 88 23 chr4 136652920 136654282 -47634380 - L2 LINE L2 -971 2343 893 1803 132 68 12 chr4 136654295 136654620 -47634042 - MER61A LTR ERV1 0 343 1 23478 100 28 14 chr4 136654620 136658400 -47630262 - MER61A-int LTR ERV1 0 5217 1320 2793 193 94 52 chr4 136658394 136659139 -47629523 - MER61A-int LTR ERV1 -4441 776 1 * 1532 131 90 66 chr4 136659139 136659339 -47629323 - MER61A LTR ERV1 0 343 130 2119 100 14 0 chr4 136659339 136659628 -47629034 + AluSq SINE Alu 13 305 -8 1532 131 90 66 chr4 136659628 136659762 -47628900 - MER61A LTR ERV1 -213 130 1 23 54 0 0 chr4 136659779 136659816 -47628846 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr4 136660087 136660115 -47628547 + AT_rich Low_complexity Low_complexity 1 28 0 2398 69 0 13 chr4 136660464 136660768 -47627894 - AluY SINE Alu -11 300 1 22 56 0 0 chr4 136662228 136662264 -47626398 + AT_rich Low_complexity Low_complexity 1 36 0 760 296 104 68 chr4 136663314 136663972 -47624690 - L2 LINE L2 -6 3307 2636 334 279 23 0 chr4 136663972 136664058 -47624604 - L2 LINE L2 -794 2520 2433 22 0 0 0 chr4 136664066 136664088 -47624574 + AT_rich Low_complexity Low_complexity 1 22 0 190 333 0 0 chr4 136664819 136664876 -47623786 + L2 LINE L2 3256 3312 -1 202 61 61 0 chr4 136666272 136666305 -47622357 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 533 252 7 28 chr4 136667007 136667150 -47621512 + LTR41 LTR ERVL 1 140 -633 219 103 0 0 chr4 136667161 136667200 -47621462 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 778 207 61 96 chr4 136667424 136667704 -47620958 + LTR41 LTR ERVL 498 767 -6 261 0 0 0 chr4 136668090 136668119 -47620543 + (T)n Simple_repeat Simple_repeat 1 29 0 531 80 13 0 chr4 136668589 136668664 -47619998 + MADE1 DNA Mariner 1 76 -4 1368 210 51 31 chr4 136670427 136670780 -47617882 + MLT1A2 LTR MaLR 4 363 -11 220 242 40 16 chr4 136670996 136671120 -47617542 + (TA)n Simple_repeat Simple_repeat 1 127 0 21 36 0 0 chr4 136671950 136671978 -47616684 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 136672728 136672749 -47615913 + AT_rich Low_complexity Low_complexity 1 21 0 275 262 24 0 chr4 136673025 136673109 -47615553 + T-rich Low_complexity Low_complexity 4 89 0 197 386 92 13 chr4 136673443 136673596 -47615066 + L2 LINE L2 3104 3268 -4 207 0 0 0 chr4 136673599 136673622 -47615040 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 189 319 85 11 chr4 136673720 136673814 -47614848 - MER5B DNA MER1_type -1 177 77 5281 225 68 19 chr4 136674922 136675550 -47613112 + Charlie6 DNA MER1_type 2 598 -2902 1720 183 6 6 chr4 136675550 136675862 -47612800 - AluJo SINE Alu 0 312 1 5281 225 68 19 chr4 136675862 136677248 -47611414 + Charlie6 DNA MER1_type 598 2104 -1396 1215 228 90 23 chr4 136677240 136677639 -47611023 + Charlie6 DNA MER1_type 2868 3293 -207 * 792 241 59 10 chr4 136677652 136677855 -47610807 - MLT1E2 LTR MaLR 0 626 414 392 109 0 0 chr4 136677872 136677936 -47610726 - L1MA5 LINE L1 0 6300 6237 2111 102 7 10 chr4 136677957 136678261 -47610401 - AluSp SINE Alu -10 303 1 443 240 68 0 chr4 136678264 136678444 -47610218 - L1M1 LINE L1 -812 5488 5298 2423 83 3 0 chr4 136678454 136678766 -47609896 - AluSp SINE Alu 0 313 1 1176 160 78 0 chr4 136678796 136679064 -47609598 - L1M1 LINE L1 -837 5309 5021 * 2577 205 19 46 chr4 136679061 136679110 -47609552 + L1 LINE L1 2873 2922 -3224 1435 154 64 64 chr4 136679110 136679422 -47609240 + AluSx SINE Alu 1 312 0 2577 205 19 46 chr4 136679422 136680066 -47608596 + L1 LINE L1 2922 3547 -2599 1014 242 56 69 chr4 136680066 136680442 -47608220 - MLT1E2 LTR MaLR -192 432 62 712 203 46 131 chr4 136680517 136680822 -47607840 + MLT1C LTR MaLR 112 467 0 3927 131 18 5 chr4 136681358 136681985 -47606677 + MER41B LTR ERV1 1 635 0 216 135 0 0 chr4 136682120 136682157 -47606505 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 43 47 0 0 chr4 136682301 136682365 -47606297 + AT_rich Low_complexity Low_complexity 1 64 0 199 77 26 26 chr4 136684046 136684085 -47604577 + (TG)n Simple_repeat Simple_repeat 2 40 0 322 354 24 12 chr4 136684164 136684328 -47604334 + L1MCc LINE L1 237 402 -6021 1564 214 71 3 chr4 136684395 136684732 -47603930 + MLT1A1 LTR MaLR 1 360 -5 1045 94 43 166 chr4 136685099 136685641 -47603021 + MER4C LTR ERV1 1 465 0 644 295 38 43 chr4 136685641 136686038 -47602624 + L1MCc LINE L1 1137 1531 -4892 24 77 0 0 chr4 136686829 136686881 -47601781 + AT_rich Low_complexity Low_complexity 1 52 0 1873 147 62 34 chr4 136687104 136687457 -47601205 + THE1B LTR MaLR 2 364 0 11163 107 6 1 chr4 136687457 136689025 -47599637 + THE1B-int LTR MaLR 1 1577 -3 1970 157 19 19 chr4 136689026 136689390 -47599272 + THE1B LTR MaLR 1 364 0 22 80 0 0 chr4 136690625 136690675 -47597987 + AT_rich Low_complexity Low_complexity 1 50 0 229 243 14 40 chr4 136692307 136692381 -47596281 + MLT1E2 LTR MaLR 1 72 -582 1272 257 136 7 chr4 136692452 136692872 -47595790 + MLT1E2 LTR MaLR 136 609 -17 467 355 84 29 chr4 136692948 136693458 -47595204 + MLT1K LTR MaLR 34 571 -17 501 47 0 0 chr4 136695675 136695739 -47592923 + (CA)n Simple_repeat Simple_repeat 2 65 0 911 194 31 76 chr4 136695741 136696168 -47592494 + MLT1A2 LTR MaLR 1 374 0 2178 184 26 0 chr4 136697110 136697501 -47591161 + Tigger1 DNA MER2_type 1 401 -2017 4680 155 19 9 chr4 136697602 136698407 -47590255 + Tigger1 DNA MER2_type 1606 2418 0 523 304 89 25 chr4 136699732 136700324 -47588338 + L1MCc LINE L1 1598 2227 -4895 382 207 128 43 chr4 136700349 136700537 -47588125 + L1MCc LINE L1 3540 3743 -3198 22 35 0 0 chr4 136700542 136700571 -47588091 + AT_rich Low_complexity Low_complexity 1 29 0 838 291 81 17 chr4 136700580 136701048 -47587614 + L1MCc LINE L1 4495 4992 -1949 1093 355 50 16 chr4 136701052 136701956 -47586706 - HERV16 LTR ERVL -2275 2721 1717 1120 361 52 2 chr4 136702026 136702530 -47586132 - HERV16 LTR ERVL -3414 1582 1054 277 397 15 0 chr4 136703077 136703208 -47585454 - HERV16 LTR ERVL -3414 1582 1450 660 299 28 5 chr4 136705106 136705320 -47583342 - MER20 DNA MER1_type 0 219 1 28 0 0 0 chr4 136705603 136705631 -47583031 + AT_rich Low_complexity Low_complexity 1 28 0 1023 297 82 5 chr4 136705648 136706028 -47582634 - LTR16B LTR ERVL 0 464 56 859 232 30 0 chr4 136706207 136706405 -47582257 - MER3 DNA MER1_type -1 208 5 23 68 0 0 chr4 136706673 136706717 -47581945 + AT_rich Low_complexity Low_complexity 1 44 0 9308 230 33 31 chr4 136706758 136706937 -47581725 - L1M3 LINE L1 -401 6018 5841 1839 102 4 4 chr4 136706937 136707192 -47581470 - AluSp SINE Alu -8 305 51 9308 230 33 31 chr4 136707192 136710338 -47578324 - L1M3 LINE L1 -578 5841 2586 1229 176 100 8 chr4 136710338 136710599 -47578063 - AluSx SINE Alu -27 285 1 9308 230 33 31 chr4 136710599 136713171 -47575491 - L1M3 LINE L1 -3833 2586 21 1897 199 15 39 chr4 136714172 136714523 -47574139 - MSTD LTR MaLR 0 396 55 2472 66 0 0 chr4 136714523 136714828 -47573834 - AluY SINE Alu -6 305 1 1897 199 15 39 chr4 136714828 136714882 -47573780 - MSTD LTR MaLR -341 55 1 2126 125 0 0 chr4 136715739 136716027 -47572635 + AluSg SINE Alu 13 300 -10 863 233 19 14 chr4 136716959 136717174 -47571488 - MLT1A1 LTR MaLR 0 365 150 607 178 60 93 chr4 136717198 136717427 -47571235 - L1MA9 LINE L1 0 6317 6134 1616 190 0 3 chr4 136717427 136717722 -47570940 + AluJb SINE Alu 10 303 -9 607 178 60 93 chr4 136717722 136717785 -47570877 - L1MA9 LINE L1 -183 6134 6070 3520 173 26 9 chr4 136717794 136718481 -47570181 + L1MA9 LINE L1 5318 6016 -296 560 182 64 9 chr4 136718481 136718591 -47570071 - MLT1A1 LTR MaLR -207 158 43 21 36 0 0 chr4 136718694 136718722 -47569940 + AT_rich Low_complexity Low_complexity 1 28 0 303 314 22 63 chr4 136718784 136719007 -47569655 + Charlie8 DNA MER1_type 53 266 -2151 357 360 72 5 chr4 136719264 136719456 -47569206 + MIR SINE MIR 30 241 -21 318 26 0 0 chr4 136720141 136720180 -47568482 + (CA)n Simple_repeat Simple_repeat 2 40 0 1487 358 76 20 chr4 136720213 136721628 -47567034 - ERVL LTR ERVL -3006 2758 1264 267 324 106 11 chr4 136721803 136721982 -47566680 - ERVL LTR ERVL -4726 928 733 311 336 72 24 chr4 136722047 136722297 -47566365 - ERVL LTR ERVL -5148 616 355 1098 222 167 59 chr4 136723370 136723927 -47564735 - MLT1E3 LTR MaLR -2 622 1 21 0 0 0 chr4 136724503 136724524 -47564138 + AT_rich Low_complexity Low_complexity 1 21 0 201 39 0 0 chr4 136725314 136725340 -47563322 + (TA)n Simple_repeat Simple_repeat 2 27 0 2065 133 0 0 chr4 136725340 136725634 -47563028 - AluSx SINE Alu -18 294 1 427 344 37 28 chr4 136726486 136726704 -47561958 + MIR SINE MIR 32 251 -11 1893 129 3 43 chr4 136727485 136727810 -47560852 + AluSx SINE Alu 1 312 0 230 303 33 49 chr4 136728353 136728475 -47560187 + MIR SINE MIR 5 124 -138 826 218 35 40 chr4 136729281 136729483 -47559179 - L2 LINE L2 -498 2816 2616 2610 191 13 26 chr4 136729711 136730256 -47558406 - MER34 LTR ERV1 -2 540 3 183 80 0 0 chr4 136731464 136731489 -47557173 + (TA)n Simple_repeat Simple_repeat 2 26 0 1518 246 28 17 chr4 136732078 136732439 -47556223 + MSTD LTR MaLR 1 365 -31 23 68 0 0 chr4 136732619 136732663 -47555999 + AT_rich Low_complexity Low_complexity 1 44 0 200 370 65 9 chr4 136733429 136733537 -47555125 + L2 LINE L2 3151 3264 -8 2102 61 0 0 chr4 136733586 136733847 -47554815 + MER41A LTR ERV1 1 261 -293 4166 115 51 51 chr4 136733850 136734635 -47554027 - LTR1 LTR ERV1 0 785 1 16562 163 33 12 chr4 136734678 136736772 -47551890 - HUERS-P2 LTR ERV1 0 3088 921 308 16 16 78 chr4 136736772 136736836 -47551826 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 16562 163 33 12 chr4 136736836 136737566 -47551096 - HUERS-P2 LTR ERV1 -2167 921 207 4186 147 26 34 chr4 136737661 136738452 -47550210 - LTR1 LTR ERV1 0 785 1 2321 80 3 3 chr4 136738479 136738790 -47549872 + MER41A LTR ERV1 244 554 0 258 278 17 0 chr4 136740964 136741079 -47547583 + L1MEc LINE L1 2199 2315 -4081 28 0 0 0 chr4 136742890 136742918 -47545744 + AT_rich Low_complexity Low_complexity 1 28 0 259 153 0 129 chr4 136746106 136746191 -47542471 - MLT2B2 LTR ERVL 0 520 442 1264 209 24 73 chr4 136746205 136746317 -47542345 - MLT2B2 LTR ERVL -201 314 198 1894 133 42 3 chr4 136746317 136746603 -47542059 - AluSg SINE Alu -13 297 1 1264 209 24 73 chr4 136746603 136746820 -47541842 - MLT2B2 LTR ERVL -317 198 1 3242 165 62 16 chr4 136747081 136747755 -47540907 + MER67C LTR ERV1 6 710 0 2355 188 22 5 chr4 136748402 136748849 -47539813 - LTR45 LTR ERV1 0 525 71 783 281 17 29 chr4 136749045 136749283 -47539379 - LTR43 LTR ERV1 -137 465 231 1691 166 3 21 chr4 136749558 136749848 -47538814 - LOR1b LTR ERV1 0 461 177 21 36 0 0 chr4 136751705 136751733 -47536929 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr4 136751947 136751976 -47536686 + (TA)n Simple_repeat Simple_repeat 1 29 0 233 156 16 47 chr4 136752719 136752783 -47535879 + GA-rich Low_complexity Low_complexity 3 64 0 679 325 75 55 chr4 136753024 136753538 -47535124 - L2 LINE L2 -19 3294 2772 254 297 29 101 chr4 136753905 136754043 -47534619 + MIR3 SINE MIR 75 202 -6 212 0 36 0 chr4 136755573 136755601 -47533061 + (TTTC)n Simple_repeat Simple_repeat 4 32 0 22 99 0 0 chr4 136756139 136756210 -47532452 + AT_rich Low_complexity Low_complexity 1 71 0 3928 163 26 23 chr4 136756583 136757351 -47531311 + LTR1 LTR ERV1 16 785 0 25 31 0 0 chr4 136757927 136757959 -47530703 + AT_rich Low_complexity Low_complexity 1 32 0 2031 149 3 0 chr4 136758517 136758826 -47529836 + AluSx SINE Alu 1 310 -2 2496 14 0 3 chr4 136759053 136759336 -47529326 + AluYa5 SINE Alu 28 309 -2 6222 90 17 2 chr4 136760524 136761712 -47526950 - L1PA10 LINE L1 -11 6157 4984 1515 183 27 37 chr4 136762123 136762423 -47526239 - AluJo SINE Alu -15 297 1 304 148 0 0 chr4 136763447 136763501 -47525161 - LOR1b-int LTR ERV1 -37 8083 8030 * 1616 118 35 0 chr4 136763500 136763755 -47524907 - LOR1b-int LTR ERV1 -2056 6064 5801 * 29241 128 48 44 chr4 136763741 136766653 -47522009 - LOR1b-int LTR ERV1 -2592 5528 2584 2017 117 0 30 chr4 136766653 136766953 -47521709 + AluSg SINE Alu 3 293 -17 29241 128 48 44 chr4 136766953 136769547 -47519115 - LOR1b-int LTR ERV1 -5536 2584 1 1986 180 62 16 chr4 136769547 136769931 -47518731 - LOR1b LTR ERV1 0 461 60 438 183 0 0 chr4 136770045 136770116 -47518546 - LTR45 LTR ERV1 -454 71 1 3152 176 113 8 chr4 136770619 136771254 -47517408 - MER44D DNA MER2_type -1 704 3 270 56 0 0 chr4 136771879 136771915 -47516747 + (CA)n Simple_repeat Simple_repeat 2 37 0 248 329 41 48 chr4 136772086 136772232 -47516430 - L2 LINE L2 0 3313 3169 623 281 62 14 chr4 136772392 136772602 -47516060 + MIR SINE MIR 13 232 -30 193 349 38 45 chr4 136772809 136772941 -47515721 + MIR SINE MIR 19 149 -59 23 0 0 0 chr4 136773991 136774014 -47514648 + AT_rich Low_complexity Low_complexity 1 23 0 369 167 19 9 chr4 136774014 136774122 -47514540 + (TA)n Simple_repeat Simple_repeat 2 110 0 291 28 0 0 chr4 136774731 136774767 -47513895 + (CA)n Simple_repeat Simple_repeat 2 37 0 2757 203 77 4 chr4 136774788 136775344 -47513318 - MER77 LTR ERV1 -8 597 1 27 49 0 0 chr4 136776137 136776178 -47512484 + AT_rich Low_complexity Low_complexity 1 41 0 252 86 0 0 chr4 136776411 136776446 -47512216 + (A)n Simple_repeat Simple_repeat 1 35 0 499 278 229 5 chr4 136776781 136776986 -47511676 + MIR SINE MIR 2 252 -10 588 275 50 10 chr4 136777193 136777324 -47511338 + MER3 DNA MER1_type 2 145 -64 2297 75 0 3 chr4 136777324 136777618 -47511044 - AluY SINE Alu -13 298 6 588 275 50 10 chr4 136777618 136777686 -47510976 + MER3 DNA MER1_type 145 209 0 229 239 0 0 chr4 136777645 136777691 -47510971 - MER3 DNA MER1_type -121 88 43 * 478 279 26 19 chr4 136778193 136778347 -47510315 - LTR33 LTR ERVL -366 155 1 641 254 0 0 chr4 136778494 136778678 -47509984 - AluJb SINE Alu 0 330 147 1779 166 7 10 chr4 136778882 136779189 -47509473 + AluJb SINE Alu 7 312 0 253 309 50 80 chr4 136780608 136780809 -47507853 - L2 LINE L2 0 3313 3119 2318 77 0 49 chr4 136781324 136781648 -47507014 + AluY SINE Alu 1 308 -3 25 0 0 0 chr4 136781871 136781896 -47506766 + AT_rich Low_complexity Low_complexity 1 25 0 469 287 11 52 chr4 136781989 136782163 -47506499 + MIR SINE MIR 15 181 -81 30 69 0 0 chr4 136782429 136782487 -47506175 + AT_rich Low_complexity Low_complexity 1 58 0 212 290 41 118 chr4 136782878 136783047 -47505615 + MIR3 SINE MIR 43 198 -10 216 0 0 0 chr4 136783494 136783518 -47505144 + (T)n Simple_repeat Simple_repeat 1 24 0 718 202 6 46 chr4 136784869 136785042 -47503620 - FRAM SINE Alu -11 165 1 22 70 0 0 chr4 136785244 136785287 -47503375 + AT_rich Low_complexity Low_complexity 1 43 0 667 311 54 25 chr4 136786007 136786248 -47502414 - MIR SINE MIR 0 262 15 486 274 166 31 chr4 136786818 136787041 -47501621 - MLT1E LTR MaLR -270 323 71 906 204 121 22 chr4 136787336 136787744 -47500918 - MLT1D LTR MaLR 0 505 23 68 55 0 0 chr4 136788092 136788202 -47500460 + AT_rich Low_complexity Low_complexity 1 110 0 4945 187 23 8 chr4 136789214 136789548 -47499114 - L1PA16 LINE L1 -4 6162 5834 1632 177 61 12 chr4 136789548 136789875 -47498787 + MER61A LTR ERV1 1 343 0 4945 187 23 8 chr4 136789875 136790902 -47497760 - L1PA16 LINE L1 -332 5834 4784 23 54 0 0 chr4 136791357 136791394 -47497268 + AT_rich Low_complexity Low_complexity 1 37 0 182 346 45 30 chr4 136792402 136792535 -47496127 + MIR SINE MIR 90 224 -38 409 299 156 34 chr4 136793515 136793873 -47494789 + MLT1L LTR MaLR 200 601 -14 298 218 46 81 chr4 136794528 136794615 -47494047 - MIR SINE MIR -142 120 37 275 381 48 24 chr4 136795090 136795216 -47493446 + L2 LINE L2 3122 3250 -22 1079 220 13 0 chr4 136795502 136795734 -47492928 + MER46A DNA MER2_type 1 235 -1 765 223 25 55 chr4 136795790 136795992 -47492670 + MLT1A1 LTR MaLR 1 196 -169 708 107 8 16 chr4 136796031 136796152 -47492510 + THE1C-int LTR MaLR 1461 1580 0 1805 169 29 40 chr4 136796152 136796531 -47492131 + THE1C LTR MaLR 1 375 0 620 227 0 45 chr4 136796547 136796701 -47491961 + MLT1A1 LTR MaLR 219 365 0 1733 197 3 0 chr4 136797456 136797766 -47490896 - AluJo SINE Alu -1 311 1 397 57 0 0 chr4 136798199 136798252 -47490410 + L1MC1 LINE L1 6275 6327 -6 31 76 0 0 chr4 136798329 136798395 -47490267 + AT_rich Low_complexity Low_complexity 1 66 0 240 316 57 11 chr4 136798407 136798584 -47490078 - L1ME LINE L1 -2374 3706 3522 554 276 92 14 chr4 136798666 136799719 -47488943 - L1ME LINE L1 -2705 3375 2136 273 146 0 0 chr4 136799723 136799771 -47488891 + (TTCC)n Simple_repeat Simple_repeat 1 48 0 409 271 28 31 chr4 136799771 136800060 -47488602 - L1ME LINE L1 -4075 2186 1838 595 301 87 18 chr4 136800116 136801089 -47487573 - L1ME LINE L1 -4374 1706 620 321 354 71 67 chr4 136801347 136801782 -47486880 - L1ME LINE L1 -5623 447 11 22 35 0 0 chr4 136801782 136801811 -47486851 + AT_rich Low_complexity Low_complexity 1 29 0 426 85 73 0 chr4 136804955 136805037 -47483625 + CT-rich Low_complexity Low_complexity 3 90 0 771 222 12 6 chr4 136805099 136805270 -47483392 + AluJb SINE Alu 140 311 -1 21 0 0 0 chr4 136805449 136805470 -47483192 + AT_rich Low_complexity Low_complexity 1 21 0 1939 152 33 30 chr4 136806109 136806472 -47482190 + THE1B LTR MaLR 1 364 0 10804 110 13 5 chr4 136806473 136808040 -47480622 + THE1B-int LTR MaLR 2 1580 0 1836 162 33 25 chr4 136808042 136808401 -47480261 + THE1B LTR MaLR 3 364 0 193 337 63 21 chr4 136809185 136809280 -47479382 + MIR SINE MIR 88 186 -76 276 216 14 0 chr4 136809402 136809476 -47479186 + (TA)n Simple_repeat Simple_repeat 2 76 0 327 326 33 28 chr4 136809693 136809874 -47478788 - MIR SINE MIR -42 220 39 26 30 0 0 chr4 136810026 136810059 -47478603 + AT_rich Low_complexity Low_complexity 1 33 0 1118 162 85 17 chr4 136810789 136811024 -47477638 + L1PA16 LINE L1 5907 6157 -9 25 31 0 0 chr4 136812221 136812253 -47476409 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr4 136812552 136812576 -47476086 + AT_rich Low_complexity Low_complexity 1 24 0 183 300 33 0 chr4 136813620 136813680 -47474982 - MIR SINE MIR -131 77 16 2188 113 0 0 chr4 136815548 136815849 -47472813 + AluSg SINE Alu 1 301 -9 180 338 75 0 chr4 136815851 136815931 -47472731 - L2 LINE L2 -94 3219 3134 360 287 15 72 chr4 136816407 136816602 -47472060 - HERVL LTR ERVL -262 5392 5209 945 302 29 24 chr4 136816858 136817236 -47471426 + ERVL LTR ERVL 4126 4505 -1259 2150 160 42 44 chr4 136818268 136818699 -47469963 - MSTB1 LTR MaLR -2 430 1 21 57 0 0 chr4 136820683 136820718 -47467944 + AT_rich Low_complexity Low_complexity 1 35 0 2227 100 3 3 chr4 136821585 136821884 -47466778 - AluSg SINE Alu -11 299 1 1179 116 0 0 chr4 136822061 136822225 -47466437 + AluY SINE Alu 131 294 -17 1355 199 138 47 chr4 136823303 136823541 -47465121 - MLT1C LTR MaLR 0 467 252 396 0 0 0 chr4 136823541 136823585 -47465077 + (TG)n Simple_repeat Simple_repeat 2 45 0 1355 199 138 47 chr4 136823585 136823651 -47465011 - MLT1C LTR MaLR -215 252 193 4129 164 110 87 chr4 136823651 136824647 -47464015 + LTR28 LTR ERV1 2 1020 0 1355 199 138 47 chr4 136824647 136824769 -47463893 - MLT1C LTR MaLR -274 193 1 667 214 84 62 chr4 136825469 136825698 -47462964 + MER61D LTR ERV1 341 1232 -12 838 234 16 16 chr4 136827068 136827260 -47461402 - MLT1A1 LTR MaLR 0 365 174 1303 233 84 47 chr4 136827265 136827826 -47460836 - LTR48B LTR ERV1 0 644 22 955 191 0 11 chr4 136827850 136828028 -47460634 - MLT1A1 LTR MaLR -189 176 1 5768 195 43 81 chr4 136828632 136830271 -47458391 - MER52A LTR ERV1 0 1755 179 244 111 0 0 chr4 136830739 136830784 -47457878 - MER52C LTR ERV1 -900 378 334 2843 19 0 0 chr4 136831154 136831471 -47457191 + AluYb8 SINE Alu 1 317 -1 337 316 68 11 chr4 136832484 136832661 -47456001 - L1ME LINE L1 -439 5682 5496 353 326 62 33 chr4 136833471 136833778 -47454884 - L1MC4 LINE L1 -465 7577 7262 417 261 44 36 chr4 136833800 136834049 -47454613 - L1MC4 LINE L1 -878 7164 6914 22 70 0 0 chr4 136835405 136835448 -47453214 + AT_rich Low_complexity Low_complexity 1 43 0 337 143 13 13 chr4 136836428 136836505 -47452157 + CT-rich Low_complexity Low_complexity 4 80 0 23 0 0 0 chr4 136837859 136837882 -47450780 + AT_rich Low_complexity Low_complexity 1 23 0 307 271 6 90 chr4 136838064 136838241 -47450421 + L1ME4a LINE L1 5931 6092 -29 792 181 0 0 chr4 136838426 136838553 -47450109 - FLAM_C SINE Alu -6 127 1 24 0 0 0 chr4 136838818 136838842 -47449820 + AT_rich Low_complexity Low_complexity 1 24 0 32 0 0 0 chr4 136839057 136839089 -47449573 + AT_rich Low_complexity Low_complexity 1 32 0 190 143 0 0 chr4 136839347 136839375 -47449287 + MER5B DNA MER1_type 20 47 -131 192 97 0 0 chr4 136839378 136839409 -47449253 + (CAAAAA)n Simple_repeat Simple_repeat 5 35 0 1267 280 106 35 chr4 136839812 136840021 -47448641 + L1ME2 LINE L1 3716 3909 -2237 1874 171 0 0 chr4 136840021 136840319 -47448343 + AluJo SINE Alu 3 300 -12 1267 280 106 35 chr4 136840319 136840997 -47447665 + L1ME2 LINE L1 3909 4666 -1480 6936 176 123 15 chr4 136841012 136842457 -47446205 - MER52A LTR ERV1 0 1755 1 265 242 175 8 chr4 136842470 136842590 -47446072 + L1ME2 LINE L1 4694 4833 -1313 2321 56 3 20 chr4 136842755 136843061 -47445601 + AluY SINE Alu 1 301 -10 822 230 23 74 chr4 136843230 136843539 -47445123 + L1ME2 LINE L1 5764 6056 -108 211 343 39 29 chr4 136843687 136843789 -47444873 + MER5B DNA MER1_type 50 152 -26 2433 65 3 7 chr4 136843961 136844270 -47444392 + AluY SINE Alu 1 308 -3 346 319 142 0 chr4 136844733 136844902 -47443760 + MIR SINE MIR 17 209 -53 469 53 107 0 chr4 136844920 136844995 -47443667 - L1MA1 LINE L1 0 6302 6220 282 238 20 93 chr4 136845428 136845579 -47443083 - L1ME1 LINE L1 -107 6059 5920 234 339 54 0 chr4 136845607 136845719 -47442943 - MER117 DNA MER1_type -6 191 74 340 150 80 70 chr4 136845919 136846019 -47442643 + L1MC2 LINE L1 6235 6335 -9 643 284 37 30 chr4 136846374 136846642 -47442020 - MER93a LTR ERV1 0 402 133 1185 211 24 98 chr4 136848285 136848664 -47439998 - MLT1A1 LTR MaLR -12 353 3 426 136 0 0 chr4 136849368 136849449 -47439213 + (TG)n Simple_repeat Simple_repeat 1 81 0 24 67 0 0 chr4 136849494 136849539 -47439123 + AT_rich Low_complexity Low_complexity 1 45 0 3810 167 38 39 chr4 136849616 136850402 -47438260 - LTR1 LTR ERV1 0 785 1 2170 115 9 0 chr4 136850680 136851018 -47437644 - L1P LINE L1 -848 5298 4958 2269 141 6 3 chr4 136851018 136851372 -47437290 + THE1A LTR MaLR 1 355 0 1277 69 17 0 chr4 136851372 136851545 -47437117 + THE1A-int LTR MaLR 1 176 -1404 4363 102 35 5 chr4 136851547 136852197 -47436465 + L1PA8 LINE L1 5499 6168 -4 219 215 0 0 chr4 136852642 136852707 -47435955 + (TA)n Simple_repeat Simple_repeat 2 66 0 234 243 135 27 chr4 136852879 136852990 -47435672 - L1ME LINE L1 -452 5669 5547 1647 200 22 33 chr4 136853383 136853539 -47435123 + MLT1A1 LTR MaLR 1 157 -208 2502 76 0 0 chr4 136853539 136853842 -47434820 + AluSc SINE Alu 1 303 -6 1647 200 22 33 chr4 136853842 136854050 -47434612 + MLT1A1 LTR MaLR 157 361 -4 189 0 0 0 chr4 136854208 136854229 -47434433 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 202 360 93 22 chr4 136854485 136854624 -47434038 + L2 LINE L2 2660 2808 -506 617 248 20 0 chr4 136854742 136854895 -47433767 + MLT1B LTR MaLR 233 388 -2 2412 43 0 4 chr4 136855056 136855361 -47433301 - AluY SINE Alu 0 304 1 1777 193 20 0 chr4 136855420 136855721 -47432941 - AluJb SINE Alu -5 307 1 1920 145 132 5 chr4 136855818 136856198 -47432464 + MSTA LTR MaLR 1 428 0 264 289 141 8 chr4 136856243 136856364 -47432298 - MIR SINE MIR -4 258 122 272 257 117 56 chr4 136856600 136856849 -47431813 - HAL1 LINE L1 0 2507 2244 742 262 103 5 chr4 136857353 136857567 -47431095 - MLT1F1 LTR MaLR -2 565 331 717 262 18 6 chr4 136857809 136857977 -47430685 - MER5B DNA MER1_type -5 173 4 2119 119 3 0 chr4 136858299 136858592 -47430070 + AluSx SINE Alu 1 294 -18 283 93 0 0 chr4 136859201 136859244 -47429418 - U5 snRNA snRNA -73 43 1 381 254 186 57 chr4 136859600 136859793 -47428869 - MIR SINE MIR -10 252 35 1006 215 19 10 chr4 136859825 136860034 -47428628 - MER20 DNA MER1_type 0 219 9 1928 134 32 0 chr4 136860176 136860453 -47428209 - AluSg SINE Alu -18 292 7 12329 104 15 1 chr4 136860464 136863035 -47425627 - L1PA7 LINE L1 0 6154 3541 17811 147 14 98 chr4 136863035 136867069 -47421593 - L1P LINE L1 -2445 3701 9 715 193 0 15 chr4 136867283 136867418 -47421244 + FLAM_C SINE Alu 1 133 0 28 29 0 0 chr4 136868459 136868494 -47420168 + AT_rich Low_complexity Low_complexity 1 35 0 718 305 45 16 chr4 136868668 136868914 -47419748 - LTR16A LTR ERVL -9 441 189 903 260 70 6 chr4 136869737 136870052 -47418610 - L1M4 LINE L1 -2063 4894 4560 704 147 9 9 chr4 136870055 136870171 -47418491 + AluSq/x SINE Alu 1 116 -197 276 149 0 0 chr4 136870271 136870318 -47418344 + (A)n Simple_repeat Simple_repeat 1 47 0 480 247 19 26 chr4 136870366 136870520 -47418142 - L1M4 LINE L1 -2512 4445 4293 272 256 106 14 chr4 136870610 136870817 -47417845 - L1M4 LINE L1 -2806 4151 3926 1256 107 17 6 chr4 136870853 136871031 -47417631 - AluY SINE Alu -13 298 119 1276 248 101 22 chr4 136871049 136871626 -47417036 - L1M4 LINE L1 -3081 3876 3255 923 331 61 38 chr4 136871763 136872577 -47416085 - L1M4 LINE L1 -4550 2409 1539 457 183 143 8 chr4 136872606 136872732 -47415930 - BC200 scRNA scRNA -44 156 14 3445 285 71 45 chr4 136872786 136874202 -47414460 - L1M4 LINE L1 -5398 1461 8 648 283 121 36 chr4 136874205 136874964 -47413698 - L1MEc LINE L1 -4754 1642 819 312 361 43 17 chr4 136875441 136875671 -47412991 - L1MEc LINE L1 -5988 408 173 30 27 0 0 chr4 136876049 136876086 -47412576 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr4 136876504 136876525 -47412137 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr4 136876974 136876998 -47411664 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 185 0 0 39 chr4 136928119 136928145 -47360517 + (CAAAAA)n Simple_repeat Simple_repeat 5 29 0 1162 206 28 3 chr4 136928649 136928935 -47359727 - L1 LINE L1 -912 5234 4942 673 306 140 28 chr4 136928950 136929432 -47359230 + MLT1F1 LTR MaLR 1 567 0 829 188 63 36 chr4 136930287 136930510 -47358152 + MLT1A1 LTR MaLR 133 361 -4 3432 272 75 7 chr4 136930747 136932229 -47356433 + L1MD2 LINE L1 2397 3978 -2168 2127 174 22 3 chr4 136932239 136932606 -47356056 + MLT1B LTR MaLR 15 388 -2 3453 257 73 30 chr4 136932611 136934833 -47353829 + L1MD2 LINE L1 3987 6345 -14 221 399 17 22 chr4 136934896 136935074 -47353588 - MIR SINE MIR -37 225 49 348 299 0 37 chr4 136935875 136935982 -47352680 + L2 LINE L2 3193 3295 -18 21 0 0 0 chr4 136936478 136936499 -47352163 + AT_rich Low_complexity Low_complexity 1 21 0 2061 138 0 22 chr4 136936917 136937235 -47351427 - AluSx SINE Alu -1 311 1 2136 58 0 22 chr4 136937765 136938083 -47350579 + AluY SINE Alu 11 322 0 208 259 0 17 chr4 136938213 136938271 -47350391 + GA-rich Low_complexity Low_complexity 2 58 0 247 167 0 33 chr4 136938644 136938704 -47349958 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 410 323 151 14 chr4 136938716 136938995 -47349667 - L1ME4a LINE L1 -95 6026 5710 25 65 0 0 chr4 136939076 136939122 -47349540 + AT_rich Low_complexity Low_complexity 1 46 0 25 0 0 0 chr4 136939362 136939387 -47349275 + AT_rich Low_complexity Low_complexity 1 25 0 30 69 0 0 chr4 136939505 136939563 -47349099 + AT_rich Low_complexity Low_complexity 1 58 0 2086 175 114 15 chr4 136939835 136940354 -47348308 - L1MD3 LINE L1 -1 7994 7425 330 216 20 69 chr4 136940354 136940456 -47348206 - MLT1F1 LTR MaLR -419 148 52 323 186 52 10 chr4 136940469 136940566 -47348096 - L1MC3 LINE L1 -684 7101 7001 407 280 63 11 chr4 136940760 136940949 -47347713 + L2 LINE L2 2395 2593 -721 334 233 22 33 chr4 136941173 136941263 -47347399 - MER58 DNA MER1_type -2154 266 178 627 281 206 14 chr4 136941361 136941720 -47346942 + L2 LINE L2 2882 3309 -4 384 130 0 29 chr4 136942727 136942796 -47345866 + Alu SINE Alu 236 302 0 216 380 0 0 chr4 136943013 136943084 -47345578 + MIR SINE MIR 171 241 -21 1729 184 0 3 chr4 136943262 136943577 -47345085 - AluJo SINE Alu 0 314 1 385 319 52 29 chr4 136946775 136946985 -47341677 + MIR SINE MIR 48 262 0 1980 207 81 15 chr4 136948646 136949102 -47339560 + MLT2B1 LTR ERVL 3 395 -19 348 89 44 22 chr4 136949139 136949229 -47339433 + (TA)n Simple_repeat Simple_repeat 1 92 0 181 278 69 14 chr4 136950649 136950721 -47337941 - MIR SINE MIR -13 249 174 2273 93 0 0 chr4 136953016 136953305 -47335357 + AluSc SINE Alu 1 289 -20 642 219 129 20 chr4 136953606 136953807 -47334855 + MER58A DNA MER1_type 2 224 0 222 325 96 32 chr4 136955155 136955312 -47333350 + L2 LINE L2 2235 2401 -913 722 194 0 8 chr4 136955319 136955453 -47333209 - FLAM_C SINE Alu -10 133 1 289 375 19 39 chr4 136955506 136955714 -47332948 + L2 LINE L2 2703 2906 -408 2112 129 0 0 chr4 136956362 136956672 -47331990 - AluSp SINE Alu -3 310 1 252 0 0 0 chr4 136958236 136958264 -47330398 + (CA)n Simple_repeat Simple_repeat 1 28 0 4824 182 34 36 chr4 136958545 136960032 -47328630 + L1MA5 LINE L1 4821 6300 0 444 314 49 22 chr4 136960352 136960380 -47328282 + L2 LINE L2 3077 3103 -210 207 0 0 0 chr4 136960380 136960403 -47328259 + (TG)n Simple_repeat Simple_repeat 2 24 0 444 314 49 22 chr4 136960403 136960600 -47328062 + L2 LINE L2 3103 3308 -5 624 213 113 6 chr4 136960697 136960857 -47327805 - MER45A DNA AcHobo -1 177 1 27 0 0 0 chr4 136961067 136961094 -47327568 + AT_rich Low_complexity Low_complexity 1 27 0 3593 160 24 3 chr4 136963332 136963999 -47324663 - L1MA6 LINE L1 0 6300 5620 349 235 12 0 chr4 136964170 136964255 -47324407 - L1MC4 LINE L1 -1 8041 7956 * 455 310 92 5 chr4 136964233 136964417 -47324245 - L1MC4 LINE L1 -291 7751 7552 755 295 40 81 chr4 136964421 136964950 -47323712 + MER34 LTR ERV1 1 507 -35 2220 252 59 14 chr4 136965000 136965726 -47322936 - L1MC4 LINE L1 -495 7547 6789 532 271 0 8 chr4 136965730 136965848 -47322814 - MER21B LTR ERV1 -422 441 325 214 311 34 42 chr4 136965938 136966057 -47322605 + L2 LINE L2 3178 3295 -18 23 0 0 0 chr4 136966480 136966503 -47322159 + AT_rich Low_complexity Low_complexity 1 23 0 1056 214 42 0 chr4 136966564 136966779 -47321883 + MER58A DNA MER1_type 1 224 0 333 0 0 0 chr4 136967175 136967212 -47321450 + (CA)n Simple_repeat Simple_repeat 2 38 0 264 312 21 21 chr4 136967396 136967489 -47321173 - MLT1L LTR MaLR -93 522 430 23 68 0 0 chr4 136967782 136967826 -47320836 + AT_rich Low_complexity Low_complexity 1 44 0 494 358 32 8 chr4 136967882 136968128 -47320534 + MIR SINE MIR 10 261 -1 264 312 21 21 chr4 136968336 136968429 -47320233 - MLT1L LTR MaLR -93 522 430 1712 208 36 10 chr4 136969563 136969953 -47318709 - MLT1C LTR MaLR 0 467 68 6809 223 46 41 chr4 136969969 136971803 -47316859 + MER52A LTR ERV1 4 1755 0 2329 113 8 3 chr4 136973884 136974237 -47314425 - THE1A LTR MaLR 0 355 1 240 377 133 30 chr4 136975319 136975656 -47313006 - MER115 DNA AcHobo -321 372 1 1769 105 0 0 chr4 136977603 136977832 -47310830 + AluSq SINE Alu 36 264 -49 225 0 0 0 chr4 136977851 136977876 -47310786 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr4 136978222 136978245 -47310417 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr4 136978302 136978331 -47310331 + AT_rich Low_complexity Low_complexity 1 29 0 1037 326 39 9 chr4 136979414 136979846 -47308816 + LTR16B LTR ERVL 8 452 -12 180 0 0 0 chr4 136980200 136980220 -47308442 + (TTGG)n Simple_repeat Simple_repeat 2 21 0 1874 153 0 3 chr4 136980220 136980508 -47308154 - AluSx SINE Alu -25 287 1 596 354 65 22 chr4 136980721 136981091 -47307571 + HERV16 LTR ERVL 618 1003 -3993 799 306 4 0 chr4 136981183 136981412 -47307250 + HERV16 LTR ERVL 1140 1369 -3627 4872 127 175 94 chr4 136981431 136982871 -47305791 + pTR5 LTR ERV1 589 2438 0 1925 337 57 28 chr4 136983204 136983594 -47305068 + HERV16 LTR ERVL 1916 2293 -2703 1621 217 20 23 chr4 136983594 136983985 -47304677 - MLT1B LTR MaLR 0 390 1 1925 337 57 28 chr4 136983985 136984580 -47304082 + HERV16 LTR ERVL 2293 2929 -2067 28 48 0 0 chr4 136985206 136985248 -47303414 + AT_rich Low_complexity Low_complexity 1 42 0 2165 191 27 113 chr4 136985337 136986023 -47302639 + L1MA9 LINE L1 5644 6272 -40 26 50 0 0 chr4 136986194 136986234 -47302428 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr4 136986554 136986575 -47302087 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 136987245 136987270 -47301392 + AT_rich Low_complexity Low_complexity 1 25 0 322 290 10 10 chr4 136988361 136988461 -47300201 + (CA)n Simple_repeat Simple_repeat 1 100 0 303 281 39 0 chr4 136989655 136989783 -47298879 + (TCTA)n Simple_repeat Simple_repeat 2 134 0 300 322 0 22 chr4 136991100 136991190 -47297472 + L1MC4 LINE L1 6616 6703 -1339 1881 177 10 49 chr4 136991215 136991621 -47297041 + MLT1B LTR MaLR 1 390 0 776 239 119 5 chr4 136992865 136993066 -47295596 + MER58A DNA MER1_type 1 224 0 507 256 23 0 chr4 136993392 136993521 -47295141 + MLT1I LTR MaLR 26 157 -252 1718 194 82 17 chr4 136993555 136994091 -47294571 + MLT2A2 LTR ERVL 1 554 0 1457 189 25 42 chr4 136994178 136994581 -47294081 + L1 LINE L1 2927 3322 -2824 419 185 212 7 chr4 136994585 136994731 -47293931 + L1ME1 LINE L1 1369 1544 -4882 903 211 97 21 chr4 136994736 136995033 -47293629 + L1ME1 LINE L1 1729 2152 -4418 2237 66 0 28 chr4 136995085 136995374 -47293288 + AluY SINE Alu 1 281 -30 350 127 0 0 chr4 136995398 136995453 -47293209 + L1ME1 LINE L1 2174 2228 -4198 3475 275 40 31 chr4 136995521 136997261 -47291401 + L1ME1 LINE L1 2250 4090 -2336 544 277 103 30 chr4 136997272 136997502 -47291160 + MLT1D LTR MaLR 224 497 -8 3875 203 42 4 chr4 136997544 136998889 -47289773 - L1PB4 LINE L1 0 6858 5472 5211 192 137 18 chr4 136998889 136999984 -47288678 + MER52A LTR ERV1 1 1347 -408 657 238 0 26 chr4 136999984 137000135 -47288527 + MER52A LTR ERV1 1451 1597 -158 8489 257 27 63 chr4 137000135 137003252 -47285410 - L1PB4 LINE L1 -3834 3014 13 293 200 17 0 chr4 137003245 137003305 -47285357 + L1ME1 LINE L1 4796 4856 -1570 * 1462 213 67 20 chr4 137003533 137003890 -47284772 - MLT1A2 LTR MaLR 0 374 1 2093 210 46 19 chr4 137004591 137005114 -47283548 - L1MC3 LINE L1 -41 7744 7208 267 274 7 67 chr4 137005114 137005249 -47283413 - MLT1F1 LTR MaLR -429 138 12 1295 220 58 26 chr4 137005249 137005325 -47283337 - L1MC3 LINE L1 -714 7071 6999 2356 106 28 19 chr4 137005325 137005684 -47282978 - THE1B LTR MaLR -2 362 1 1295 220 58 26 chr4 137005684 137005953 -47282709 - L1MC3 LINE L1 -786 6999 6715 1953 161 48 17 chr4 137007330 137007683 -47280979 + THE1B LTR MaLR 1 364 0 4956 89 4 7 chr4 137008407 137009102 -47279560 + L1PA10 LINE L1 5473 6165 -3 659 284 92 33 chr4 137009814 137010085 -47278577 + LTR16A LTR ERVL 164 450 0 793 291 162 28 chr4 137010135 137010634 -47278028 - MER20B DNA MER1_type -196 587 22 253 301 62 9 chr4 137010685 137010798 -47277864 - L2 LINE L2 -554 2760 2642 505 277 17 90 chr4 137010849 137011138 -47277524 - L1ME3 LINE L1 -12 6150 5883 1640 274 42 53 chr4 137011152 137012012 -47276650 + L1ME1 LINE L1 5596 6445 -1 315 104 0 0 chr4 137012122 137012170 -47276492 + (TTCC)n Simple_repeat Simple_repeat 1 48 0 203 200 0 18 chr4 137012186 137012241 -47276421 + (TA)n Simple_repeat Simple_repeat 1 54 0 21 36 0 0 chr4 137012345 137012373 -47276289 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr4 137012408 137012437 -47276225 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr4 137013285 137013316 -47275346 + AT_rich Low_complexity Low_complexity 1 31 0 3422 234 57 48 chr4 137013584 137014841 -47273821 - Charlie1 DNA MER1_type -34 2727 1461 3078 158 10 15 chr4 137014844 137015529 -47273133 - L1M1 LINE L1 -493 5812 5128 278 281 10 21 chr4 137015837 137015933 -47272729 + L1MEc LINE L1 167 261 -6135 555 249 11 60 chr4 137016047 137016160 -47272502 + Charlie1 DNA MER1_type 1821 1923 -838 2311 92 0 0 chr4 137016160 137016454 -47272208 - AluSc SINE Alu -15 294 1 555 249 11 60 chr4 137016454 137016525 -47272137 + Charlie1 DNA MER1_type 1923 1996 -765 508 192 48 8 chr4 137016612 137016737 -47271925 + L1ME1 LINE L1 4968 5097 -1049 2727 243 60 9 chr4 137016743 137017525 -47271137 + L1ME1 LINE L1 5313 6134 -32 321 271 10 10 chr4 137018244 137018340 -47270322 - HsTC2 DNA Tc2 -1776 122 27 759 127 85 0 chr4 137018345 137018463 -47270199 + THE1B LTR MaLR 1 128 -236 180 0 0 0 chr4 137018539 137018559 -47270103 + (TA)n Simple_repeat Simple_repeat 2 21 0 670 201 15 0 chr4 137019354 137019488 -47269174 + AluJb SINE Alu 60 195 -117 24 0 0 0 chr4 137019538 137019562 -47269100 + AT_rich Low_complexity Low_complexity 1 24 0 248 53 26 0 chr4 137020168 137020206 -47268456 + (TG)n Simple_repeat Simple_repeat 2 40 0 802 240 12 0 chr4 137020708 137020879 -47267783 - FRAM SINE Alu -3 173 1 32 26 0 0 chr4 137020959 137020998 -47267664 + AT_rich Low_complexity Low_complexity 1 39 0 1744 174 7 3 chr4 137021075 137021368 -47267294 - AluJb SINE Alu -18 294 1 21 57 0 0 chr4 137022426 137022461 -47266201 + AT_rich Low_complexity Low_complexity 1 35 0 213 329 0 13 chr4 137022779 137022855 -47265807 - MIR SINE MIR -110 152 78 545 316 24 34 chr4 137022878 137023087 -47265575 + MIR SINE MIR 2 208 -54 2190 115 3 0 chr4 137023178 137023465 -47265197 - AluSp SINE Alu -24 289 2 378 0 0 0 chr4 137023876 137023918 -47264744 + (TC)n Simple_repeat Simple_repeat 1 42 0 28 0 0 0 chr4 137024250 137024278 -47264384 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr4 137024891 137024924 -47263738 + AT_rich Low_complexity Low_complexity 1 33 0 1019 68 6 19 chr4 137025010 137025171 -47263491 + (GAA)n Simple_repeat Simple_repeat 3 161 0 1746 116 79 87 chr4 137025323 137025701 -47262961 - THE1C LTR MaLR 0 375 1 9109 135 34 35 chr4 137025701 137027283 -47261379 - THE1C-int LTR MaLR 0 1580 1 2156 118 26 10 chr4 137027283 137027644 -47261018 - THE1C LTR MaLR 0 375 4 1631 183 24 32 chr4 137028069 137028407 -47260255 - MLT1A1 LTR MaLR -30 335 1 1615 177 3 50 chr4 137028497 137028814 -47259848 + AluJb SINE Alu 2 303 -9 388 280 55 50 chr4 137028990 137029172 -47259490 + MIR SINE MIR 70 252 -10 7163 42 97 0 chr4 137029404 137030533 -47258129 - L1PA5 LINE L1 -3 6151 4986 290 319 0 0 chr4 137030584 137030678 -47257984 + MIR SINE MIR 153 246 -16 25 75 0 0 chr4 137030773 137030826 -47257836 + AT_rich Low_complexity Low_complexity 1 53 0 373 300 91 43 chr4 137030944 137031174 -47257488 - MIR SINE MIR -11 251 11 239 265 17 51 chr4 137032267 137032384 -47256278 + MER104 DNA Tc2 4 116 -64 1483 327 86 59 chr4 137032392 137032584 -47256078 - L2 LINE L2 -602 2712 2527 2711 243 25 3 chr4 137032584 137033222 -47255440 - MER82 DNA MER2_type -1 652 1 1483 327 86 59 chr4 137033222 137034257 -47254405 - L2 LINE L2 -787 2527 1452 483 335 39 0 chr4 137034276 137034455 -47254207 - L2 LINE L2 -2089 1225 1040 230 349 96 20 chr4 137039115 137039261 -47249401 + MLT1K LTR MaLR 86 242 -346 293 207 61 37 chr4 137039436 137039518 -47249144 + MLT1K LTR MaLR 480 563 -25 324 268 93 21 chr4 137040449 137040546 -47248116 + MIR SINE MIR 40 143 -65 2371 264 56 27 chr4 137040553 137040896 -47247766 - L1MEc LINE L1 -2920 3295 2963 963 185 126 67 chr4 137040896 137041166 -47247496 + AluSg SINE Alu 3 288 -12 2371 264 56 27 chr4 137041166 137042235 -47246427 - L1MEc LINE L1 -3252 2963 1855 25 0 0 0 chr4 137042535 137042560 -47246102 + AT_rich Low_complexity Low_complexity 1 25 0 626 372 30 21 chr4 137042574 137042910 -47245752 - LTR16A LTR ERVL -95 355 17 2328 252 35 5 chr4 137043259 137043926 -47244736 + L1MB4 LINE L1 5579 6163 -17 251 202 11 34 chr4 137043951 137044040 -47244622 + L1MB8 LINE L1 6091 6177 -1 301 369 31 22 chr4 137044049 137044409 -47244253 - MERVL LTR ERVL -378 5107 4745 560 359 67 28 chr4 137044549 137044908 -47243754 - MERVL LTR ERVL -1202 4562 4190 1496 233 38 27 chr4 137045016 137045392 -47243270 + MLT2D LTR ERVL 1 480 -40 25 0 0 0 chr4 137045393 137045418 -47243244 + AT_rich Low_complexity Low_complexity 1 25 0 251 174 87 14 chr4 137045418 137045452 -47243210 + MLT2D LTR ERVL 445 475 -45 360 0 0 0 chr4 137045452 137045492 -47243170 + (CA)n Simple_repeat Simple_repeat 2 41 0 251 174 87 14 chr4 137045492 137045526 -47243136 + MLT2D LTR ERVL 475 518 -2 484 318 38 26 chr4 137045526 137045793 -47242869 - MERVL LTR ERVL -1728 4036 3767 24580 146 23 21 chr4 137046529 137052917 -47235745 - L1PA8A LINE L1 -2 6444 5 734 236 0 0 chr4 137052927 137053067 -47235595 - FRAM SINE Alu -35 141 2 441 378 30 21 chr4 137053141 137053424 -47235238 - MERVL LTR ERVL -2608 3156 2868 7485 180 122 28 chr4 137053424 137054664 -47233998 + MER52A LTR ERV1 1 1428 -327 2258 50 43 0 chr4 137054664 137054942 -47233720 - AluY SINE Alu -21 290 1 7485 180 122 28 chr4 137054942 137055305 -47233357 + MER52A LTR ERV1 1428 1755 0 441 378 30 21 chr4 137055305 137055349 -47233313 - MERVL LTR ERVL -2896 2868 2826 555 343 53 5 chr4 137055420 137055627 -47233035 - LTR16A LTR ERVL -95 355 139 25 0 0 0 chr4 137056355 137056380 -47232282 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr4 137056484 137056510 -47232152 + AT_rich Low_complexity Low_complexity 1 26 0 1394 222 111 49 chr4 137058834 137059320 -47229342 - MLT2B1 LTR ERVL 0 520 5 229 196 54 0 chr4 137059342 137059398 -47229264 + L1MCa LINE L1 2008 2066 -4360 26 50 0 0 chr4 137059635 137059675 -47228987 + AT_rich Low_complexity Low_complexity 1 40 0 968 226 87 10 chr4 137060077 137060365 -47228297 - L1MA7 LINE L1 -3 6288 5979 11672 193 54 13 chr4 137060373 137063631 -47225031 - L1MA7 LINE L1 -497 5794 2425 459 317 109 44 chr4 137063723 137064202 -47224460 + LTR33 LTR ERVL 12 521 0 3813 186 18 1 chr4 137064533 137065209 -47223453 - MER44D DNA MER2_type -1 704 18 391 272 37 31 chr4 137065621 137065783 -47222879 - HAL1 LINE L1 -824 1683 1521 22 0 0 0 chr4 137066395 137066417 -47222245 + AT_rich Low_complexity Low_complexity 1 22 0 186 318 93 47 chr4 137067413 137067520 -47221142 - L2 LINE L2 -24 3248 3137 21 0 0 0 chr4 137070424 137070445 -47218217 + AT_rich Low_complexity Low_complexity 1 21 0 195 162 0 0 chr4 137070953 137070990 -47217672 + (TG)n Simple_repeat Simple_repeat 2 38 0 309 87 22 0 chr4 137072186 137072232 -47216430 - MLT2B1 LTR ERVL 0 520 474 321 68 0 0 chr4 137072282 137072326 -47216336 + (GA)n Simple_repeat Simple_repeat 1 44 0 1494 203 95 55 chr4 137072351 137072784 -47215878 - MLT2B1 LTR ERVL -70 450 1 2754 290 99 25 chr4 137072814 137073042 -47215620 + L1MEc LINE L1 35 245 -6151 1833 167 56 14 chr4 137073042 137073401 -47215261 + THE1C LTR MaLR 2 375 0 2754 290 99 25 chr4 137073401 137074641 -47214021 + L1MEc LINE L1 245 1612 -4784 326 307 9 83 chr4 137075127 137075345 -47213317 - L1MCb LINE L1 -5605 440 239 23 0 0 0 chr4 137075604 137075627 -47213035 + AT_rich Low_complexity Low_complexity 1 23 0 2559 17 0 13 chr4 137075662 137075962 -47212700 - AluYa5 SINE Alu -15 296 1 678 80 0 0 chr4 137075968 137076056 -47212606 - AluY SINE Alu -188 123 36 23 33 0 0 chr4 137076105 137076135 -47212527 + AT_rich Low_complexity Low_complexity 1 30 0 26 50 0 0 chr4 137077006 137077046 -47211616 + AT_rich Low_complexity Low_complexity 1 40 0 900 310 67 5 chr4 137078559 137078930 -47209732 - LTR16C LTR ERVL -33 458 65 336 351 14 7 chr4 137079453 137079601 -47209061 - ERVL LTR ERVL -741 5023 4875 293 309 21 0 chr4 137079734 137079828 -47208834 - ERVL LTR ERVL -1015 4639 4544 354 264 69 49 chr4 137079879 137080023 -47208639 - MLT1H LTR MaLR -270 279 133 22 0 0 0 chr4 137081512 137081534 -47207128 + AT_rich Low_complexity Low_complexity 1 22 0 5765 147 40 18 chr4 137081600 137083070 -47205592 - L1PA15 LINE L1 -8 6157 4648 1645 167 47 10 chr4 137083070 137083370 -47205292 - AluJb SINE Alu -1 311 1 5765 147 40 18 chr4 137083370 137083531 -47205131 - L1PA15 LINE L1 -1517 4648 4492 5068 208 48 13 chr4 137083535 137084276 -47204386 + L1P LINE L1 3247 4047 -2099 195 100 0 0 chr4 137084276 137084306 -47204356 + (TAA)n Simple_repeat Simple_repeat 2 31 0 5068 208 48 13 chr4 137084306 137084762 -47203900 + L1P LINE L1 4047 4486 -1660 589 311 148 7 chr4 137086057 137086469 -47202193 + L1MC5 LINE L1 5472 5941 -1867 24 32 0 0 chr4 137086667 137086698 -47201964 + AT_rich Low_complexity Low_complexity 1 31 0 2801 123 6 48 chr4 137087035 137087331 -47201331 + L1PA14 LINE L1 5677 5945 -216 2451 54 0 16 chr4 137087331 137087647 -47201015 + AluY SINE Alu 1 311 0 2801 123 6 48 chr4 137087647 137087855 -47200807 + L1PA14 LINE L1 5945 6160 -1 1242 258 51 84 chr4 137088249 137088719 -47199943 + L1MC5 LINE L1 6617 7101 -860 2191 92 0 0 chr4 137088719 137089041 -47199621 - AluY SINE Alu 0 322 1 1242 258 51 84 chr4 137089041 137089454 -47199208 + L1MC5 LINE L1 7101 7471 -490 2172 104 33 3 chr4 137089454 137089753 -47198909 - AluSq SINE Alu -5 308 1 1242 258 51 84 chr4 137089753 137089810 -47198852 + L1MC5 LINE L1 7471 7528 -433 2344 179 12 16 chr4 137090553 137090983 -47197679 - MSTC LTR MaLR 0 428 1 21 36 0 0 chr4 137092016 137092044 -47196618 + AT_rich Low_complexity Low_complexity 1 28 0 39 22 0 0 chr4 137092149 137092195 -47196467 + AT_rich Low_complexity Low_complexity 1 46 0 482 298 203 22 chr4 137092461 137092861 -47195801 - L3 LINE CR1 -295 1282 811 335 274 42 11 chr4 137092869 137092964 -47195698 - L2 LINE L2 -4 3268 3171 5278 132 33 7 chr4 137093135 137094088 -47194574 - L1PB3 LINE L1 -2 6152 5171 562 313 67 43 chr4 137094358 137094852 -47193810 + MLT1H1 LTR MaLR 1 555 0 438 339 125 65 chr4 137094857 137096402 -47192260 - L2 LINE L2 -337 2977 1341 201 263 53 40 chr4 137096565 137096641 -47192021 - L3 LINE CR1 -903 674 598 513 301 9 0 chr4 137096643 137096821 -47191841 - L1MA10 LINE L1 -5 6161 5985 3691 253 54 29 chr4 137096885 137097619 -47191043 - L1MDa LINE L1 -2204 4336 3622 1342 185 58 34 chr4 137097619 137097911 -47190751 - AluJb SINE Alu -11 301 3 3691 253 54 29 chr4 137097911 137099163 -47189499 - L1MDa LINE L1 -2918 3622 2290 665 237 115 37 chr4 137099294 137099483 -47189179 + L1MD2 LINE L1 6132 7962 -33 21 36 0 0 chr4 137100427 137100455 -47188207 + AT_rich Low_complexity Low_complexity 1 28 0 245 27 54 0 chr4 137101111 137101148 -47187514 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 189 290 16 0 chr4 137102080 137102142 -47186520 + MIR SINE MIR 92 154 -108 25 31 0 0 chr4 137103509 137103541 -47185121 + AT_rich Low_complexity Low_complexity 1 32 0 245 313 164 51 chr4 137103893 137104034 -47184628 + MIR SINE MIR 20 190 -72 2190 62 14 3 chr4 137104034 137104325 -47184337 - AluY SINE Alu -17 294 1 245 313 164 51 chr4 137104325 137104378 -47184284 + MIR SINE MIR 190 236 -26 329 304 264 30 chr4 137104566 137105108 -47183554 - L1MC4a LINE L1 -1859 5949 5281 224 311 0 0 chr4 137105462 137105523 -47183139 + CT-rich Low_complexity Low_complexity 1 61 0 318 153 0 0 chr4 137106354 137106413 -47182249 + CT-rich Low_complexity Low_complexity 2 60 0 22 0 0 0 chr4 137106778 137106800 -47181862 + AT_rich Low_complexity Low_complexity 1 22 0 28 86 0 0 chr4 137106897 137106967 -47181695 + AT_rich Low_complexity Low_complexity 1 70 0 21 0 0 0 chr4 137106987 137107008 -47181654 + AT_rich Low_complexity Low_complexity 1 21 0 28 79 0 0 chr4 137108074 137108137 -47180525 + AT_rich Low_complexity Low_complexity 1 63 0 263 321 72 55 chr4 137108482 137108719 -47179943 - L3 LINE CR1 -97 1480 1240 29 0 0 0 chr4 137109187 137109216 -47179446 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr4 137109716 137109751 -47178911 + AT_rich Low_complexity Low_complexity 1 35 0 940 341 120 41 chr4 137110049 137111050 -47177612 + L2 LINE L2 514 1593 -1721 1679 188 36 6 chr4 137111263 137111592 -47177070 - MER2 DNA MER2_type -2 342 4 24 0 0 0 chr4 137111656 137111680 -47176982 + AT_rich Low_complexity Low_complexity 1 24 0 537 293 87 76 chr4 137113423 137113894 -47174768 + L1M4 LINE L1 1031 1506 -5036 22 0 0 0 chr4 137113928 137113950 -47174712 + AT_rich Low_complexity Low_complexity 1 22 0 380 267 123 49 chr4 137113963 137114248 -47174414 + L1M4 LINE L1 3710 4015 -2629 3444 174 49 30 chr4 137114262 137114991 -47173671 + L1MC1 LINE L1 5587 6329 -4 352 264 124 0 chr4 137114997 137115126 -47173536 + L1M4 LINE L1 4304 4448 -2196 2395 125 12 10 chr4 137115351 137115751 -47172911 - L1PA13 LINE L1 -5 6158 5758 357 273 178 11 chr4 137115786 137116050 -47172612 + L1M4 LINE L1 4795 5102 -1542 346 309 120 9 chr4 137116281 137116498 -47172164 + L1M4 LINE L1 5466 5706 -938 984 251 111 81 chr4 137116540 137117097 -47171565 - L1ME3A LINE L1 -95 6075 5502 260 329 70 44 chr4 137117097 137117255 -47171407 - L2 LINE L2 -2895 419 258 880 260 118 22 chr4 137117838 137118161 -47170501 + MLT1A1 LTR MaLR 12 365 0 8004 210 37 9 chr4 137118643 137119457 -47169205 - L1PB4 LINE L1 0 6858 6068 270 0 0 0 chr4 137119457 137119487 -47169175 + (TG)n Simple_repeat Simple_repeat 2 31 0 8004 210 37 9 chr4 137119487 137121585 -47167077 - L1PB4 LINE L1 -790 6068 3873 2406 251 38 24 chr4 137121667 137122892 -47165770 - L1PB4 LINE L1 -4483 2365 1214 1798 239 35 168 chr4 137123227 137124459 -47164203 - L1PB4 LINE L1 -5781 1068 1 23 0 0 0 chr4 137124478 137124501 -47164161 + AT_rich Low_complexity Low_complexity 1 23 0 4107 175 50 31 chr4 137124531 137125023 -47163639 - L1MA9 LINE L1 -38 6274 5756 288 0 0 0 chr4 137125023 137125055 -47163607 + (TG)n Simple_repeat Simple_repeat 2 33 0 4107 175 50 31 chr4 137125055 137125489 -47163173 - L1MA9 LINE L1 -556 5756 5331 1359 220 16 89 chr4 137125489 137125916 -47162746 + MSTD LTR MaLR 1 396 0 655 295 74 4 chr4 137127335 137127579 -47161083 + MIR SINE MIR 2 262 0 514 309 108 14 chr4 137129182 137129477 -47159185 + MLT1J LTR MaLR 92 414 -97 5994 151 92 13 chr4 137129545 137130729 -47157933 - MER52C LTR ERV1 0 1278 1 265 227 30 23 chr4 137131072 137131204 -47157458 + (TA)n Simple_repeat Simple_repeat 1 133 0 2532 107 13 11 chr4 137131210 137131584 -47157078 - THE1C LTR MaLR 0 375 1 725 309 113 18 chr4 137131839 137132350 -47156312 - L1ME3A LINE L1 -243 5927 5368 304 320 17 28 chr4 137132383 137132561 -47156101 - L1ME3A LINE L1 -816 5330 5155 2171 81 3 17 chr4 137132642 137132940 -47155722 + AluY SINE Alu 1 294 -17 358 299 81 27 chr4 137133164 137133385 -47155277 - L1ME3A LINE L1 -1961 4185 3953 1076 187 0 54 chr4 137133386 137133627 -47155035 - AluJo SINE Alu 0 312 85 379 267 43 19 chr4 137133725 137133886 -47154776 - L1ME3A LINE L1 -2260 3886 3722 21 36 0 0 chr4 137133932 137133960 -47154702 + AT_rich Low_complexity Low_complexity 1 28 0 254 345 35 55 chr4 137133986 137134186 -47154476 - MIR SINE MIR -56 206 11 197 314 35 58 chr4 137134381 137134467 -47154195 + L2 LINE L2 3153 3236 -36 1154 203 147 24 chr4 137135778 137135913 -47152749 + MLT1C LTR MaLR 47 164 -303 216 0 0 0 chr4 137135913 137135937 -47152725 + (CA)n Simple_repeat Simple_repeat 2 25 0 1154 203 147 24 chr4 137135937 137136176 -47152486 + MLT1C LTR MaLR 164 467 0 3358 228 103 20 chr4 137136223 137137397 -47151265 - L1MD2 LINE L1 -5 6354 5086 181 206 14 14 chr4 137137422 137137495 -47151167 + (TA)n Simple_repeat Simple_repeat 2 74 0 803 242 32 35 chr4 137137556 137137841 -47150821 - L1MD2 LINE L1 -1112 5034 4751 2745 101 75 7 chr4 137137866 137138282 -47150380 - MLT2A1 LTR ERVL 0 444 1 471 267 11 16 chr4 137138290 137138477 -47150185 - L1MD2 LINE L1 -1652 4494 4309 1258 180 9 0 chr4 137138500 137138717 -47149945 - AluJo SINE Alu -2 310 92 1785 168 48 3 chr4 137138718 137139125 -47149537 - L1M1 LINE L1 -694 5606 5185 235 135 0 0 chr4 137139483 137139520 -47149142 - L2 LINE L2 -91 3222 3186 422 256 95 7 chr4 137139545 137139682 -47148980 + MIR SINE MIR 58 206 -56 518 221 38 23 chr4 137139741 137139872 -47148790 + MIR SINE MIR 74 206 -56 364 279 23 16 chr4 137141532 137141661 -47147001 + HAL1 LINE L1 1485 1614 -893 304 332 47 54 chr4 137142549 137142826 -47145836 + HAL1 LINE L1 2222 2496 -11 23 33 0 0 chr4 137142831 137142861 -47145801 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 137143078 137143106 -47145556 + AT_rich Low_complexity Low_complexity 1 28 0 321 371 7 0 chr4 137143255 137143398 -47145264 - MIR SINE MIR -31 231 88 676 334 87 45 chr4 137143405 137143806 -47144856 - L2 LINE L2 -1 3312 2895 5159 48 9 3 chr4 137143824 137144468 -47144194 + L1PA5 LINE L1 5507 6154 0 51 0 0 0 chr4 137146380 137146431 -47142231 + AT_rich Low_complexity Low_complexity 1 51 0 490 309 96 16 chr4 137146717 137146966 -47141696 - L2 LINE L2 -62 3251 2983 1625 294 45 22 chr4 137146983 137147517 -47141145 + MER77 LTR ERV1 54 599 -6 1458 321 44 30 chr4 137147569 137148303 -47140359 - L2 LINE L2 -361 2953 2210 806 277 48 0 chr4 137148310 137148516 -47140146 + MER58A DNA MER1_type 9 224 0 233 176 20 20 chr4 137148520 137148571 -47140091 - L2 LINE L2 -1096 2218 2168 378 267 106 55 chr4 137148626 137148862 -47139800 - L2 LINE L2 -1063 2251 2004 2034 160 19 16 chr4 137149337 137149711 -47138951 + THE1C LTR MaLR 1 375 0 4849 223 33 7 chr4 137149798 137150889 -47137773 + L1MB3 LINE L1 1 1119 -5265 * 8569 221 63 34 chr4 137150885 137152264 -47136398 + L1MB3 LINE L1 1613 2950 -3469 2192 97 7 0 chr4 137152264 137152562 -47136100 - AluSc SINE Alu -9 300 1 8569 221 63 34 chr4 137152562 137152816 -47135846 + L1MB3 LINE L1 2950 3195 -3224 3977 123 21 2 chr4 137152816 137153428 -47135234 + L1PA13 LINE L1 5534 6157 -6 8569 221 63 34 chr4 137153428 137154366 -47134296 + L1MB3 LINE L1 3195 4104 -2315 1784 119 0 4 chr4 137154366 137154617 -47134045 + AluSx SINE Alu 49 298 -14 8569 221 63 34 chr4 137154617 137156710 -47131952 + L1MB3 LINE L1 4104 6416 -3 207 133 0 0 chr4 137156723 137156768 -47131894 + (TA)n Simple_repeat Simple_repeat 2 46 0 363 223 345 7 chr4 137157376 137157515 -47131147 + MER5A DNA MER1_type 1 186 -3 183 80 0 0 chr4 137158526 137158551 -47130111 + (A)n Simple_repeat Simple_repeat 1 25 0 2044 138 0 3 chr4 137159767 137160071 -47128591 + AluSx SINE Alu 6 308 -4 823 266 152 26 chr4 137160243 137160585 -47128077 - LTR16A LTR ERVL -14 436 52 21 36 0 0 chr4 137160740 137160768 -47127894 + AT_rich Low_complexity Low_complexity 1 28 0 2031 118 26 3 chr4 137161683 137161987 -47126675 + AluSx SINE Alu 2 312 0 25 75 0 0 chr4 137162134 137162187 -47126475 + AT_rich Low_complexity Low_complexity 1 53 0 778 266 281 14 chr4 137162211 137162924 -47125738 + L1ME3 LINE L1 4450 5352 -794 8968 184 38 11 chr4 137163004 137164532 -47124130 - L1MA6 LINE L1 0 6300 4815 1491 140 109 41 chr4 137164532 137164825 -47123837 - AluSq SINE Alu 0 313 1 8968 184 38 11 chr4 137164825 137166297 -47122365 - L1MA6 LINE L1 -1485 4815 3179 2328 250 78 14 chr4 137166333 137167026 -47121636 - L1MA6 LINE L1 -3200 2946 2210 1002 285 58 29 chr4 137167019 137167506 -47121156 + L1ME3 LINE L1 5494 5994 -168 * 4957 209 7 11 chr4 137167635 137168583 -47120079 + L1MA2 LINE L1 14 958 -6607 * 14029 179 46 4 chr4 137168582 137172747 -47115915 + L1MA2 LINE L1 3411 7723 0 2456 175 55 20 chr4 137173831 137174373 -47114289 + L1MA9 LINE L1 5751 6311 -1 25 31 0 0 chr4 137174891 137174923 -47113739 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr4 137175121 137175150 -47113512 + AT_rich Low_complexity Low_complexity 1 29 0 1411 209 120 9 chr4 137175428 137175754 -47112908 + MLT2D LTR ERVL 5 366 -48 254 113 0 19 chr4 137175754 137175807 -47112855 + (TC)n Simple_repeat Simple_repeat 2 53 0 324 0 0 0 chr4 137175815 137175851 -47112811 + (CA)n Simple_repeat Simple_repeat 2 37 0 249 218 18 0 chr4 137175940 137175995 -47112667 + (CAGAGA)n Simple_repeat Simple_repeat 4 59 0 21 0 0 0 chr4 137176831 137176852 -47111810 + AT_rich Low_complexity Low_complexity 1 21 0 642 297 59 23 chr4 137177584 137177803 -47110859 - MIR SINE MIR -24 238 12 2185 60 70 3 chr4 137178075 137178359 -47110303 - AluY SINE Alu -8 303 1 336 311 46 46 chr4 137178631 137178782 -47109880 + MIR SINE MIR 46 196 -66 250 197 15 30 chr4 137178929 137178995 -47109667 - HERVL18 LTR ERVL -249 5798 5734 2180 303 132 45 chr4 137181261 137182110 -47106552 + L2 LINE L2 1402 2175 -1139 252 0 0 0 chr4 137182110 137182138 -47106524 + (CA)n Simple_repeat Simple_repeat 2 29 0 2180 303 132 45 chr4 137182138 137182720 -47105942 + L2 LINE L2 2175 2958 -356 27 49 0 0 chr4 137186177 137186218 -47102444 + AT_rich Low_complexity Low_complexity 1 41 0 21 57 0 0 chr4 137186492 137186527 -47102135 + AT_rich Low_complexity Low_complexity 1 35 0 226 279 57 36 chr4 137186616 137186756 -47101906 + MER104 DNA Tc2 35 177 -3 750 290 203 0 chr4 137186840 137187195 -47101467 - Tigger8 DNA MER2_type -207 459 33 2007 126 67 17 chr4 137187851 137188208 -47100454 + THE1C LTR MaLR 1 375 0 508 344 48 22 chr4 137188247 137188477 -47100185 + MIR SINE MIR 8 243 -19 2168 105 3 3 chr4 137188477 137188773 -47099889 + AluSx SINE Alu 1 296 -16 343 350 6 71 chr4 137188842 137189025 -47099637 + MIR SINE MIR 23 193 -69 209 217 22 0 chr4 137191360 137191406 -47097256 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2092 130 7 3 chr4 137191649 137191949 -47096713 - AluSq SINE Alu -12 301 1 22 88 0 0 chr4 137192474 137192531 -47096131 + AT_rich Low_complexity Low_complexity 1 57 0 186 310 65 90 chr4 137193867 137194022 -47094640 + L2 LINE L2 2920 3070 -202 21 0 0 0 chr4 137194218 137194239 -47094423 + AT_rich Low_complexity Low_complexity 1 21 0 268 266 54 18 chr4 137194354 137194533 -47094129 + L1MC/D LINE L1 5287 5458 -704 326 248 118 30 chr4 137194618 137194791 -47093871 + L1MC/D LINE L1 5635 5822 -348 2055 113 32 0 chr4 137195136 137195419 -47093243 + AluSp SINE Alu 2 293 -20 2274 122 0 0 chr4 137196176 137196487 -47092175 - AluSx SINE Alu -1 311 1 589 193 17 8 chr4 137197297 137197416 -47091246 - FLAM_A SINE Alu -13 120 1 273 57 0 0 chr4 137198491 137198526 -47090136 + (TG)n Simple_repeat Simple_repeat 2 36 0 263 203 13 0 chr4 137198527 137198606 -47090056 + GA-rich Low_complexity Low_complexity 2 81 0 1169 225 55 19 chr4 137198993 137199264 -47089398 - MLT1A1 LTR MaLR 0 365 85 1918 261 81 45 chr4 137199264 137200015 -47088647 - MLT1A1-int LTR MaLR -21 1714 810 2816 229 36 20 chr4 137200052 137200290 -47088372 - MLT1A1-int LTR MaLR -1031 704 471 1475 220 49 9 chr4 137200290 137200640 -47088022 - MLT1A1 LTR MaLR -1 364 1 2816 229 36 20 chr4 137200640 137201094 -47087568 - MLT1A1-int LTR MaLR -1264 471 1 2159 125 39 25 chr4 137201140 137201499 -47087163 - THE1B LTR MaLR 0 364 1 1026 223 0 9 chr4 137203063 137203283 -47085379 - AluJo SINE Alu -53 259 42 1507 55 0 25 chr4 137203744 137203943 -47084719 + AluY SINE Alu 110 303 -8 22 88 0 0 chr4 137205383 137205440 -47083222 + AT_rich Low_complexity Low_complexity 1 57 0 23 33 0 0 chr4 137205686 137205716 -47082946 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 137207470 137207492 -47081170 + AT_rich Low_complexity Low_complexity 1 22 0 508 80 80 6 chr4 137207492 137207654 -47081008 + (TA)n Simple_repeat Simple_repeat 1 174 0 253 220 144 43 chr4 137207728 137207843 -47080819 - MIR SINE MIR -61 147 50 180 301 41 27 chr4 137208016 137208089 -47080573 - MIR SINE MIR -142 120 47 25 31 0 0 chr4 137208492 137208524 -47080138 + AT_rich Low_complexity Low_complexity 1 32 0 4429 106 2 0 chr4 137208624 137209258 -47079404 - L1PA12 LINE L1 -3 6165 5531 1639 126 66 0 chr4 137209259 137209660 -47079002 + L1PA12 LINE L1 5110 5539 -629 23 54 0 0 chr4 137209873 137209910 -47078752 + AT_rich Low_complexity Low_complexity 1 37 0 306 336 22 37 chr4 137210739 137210873 -47077789 - MER5A DNA MER1_type -22 167 36 274 320 46 46 chr4 137210741 137210894 -47077768 + MER5A DNA MER1_type 36 188 -1 * 1820 165 42 3 chr4 137210917 137211251 -47077411 - L1MC1 LINE L1 0 6333 5987 33 43 0 0 chr4 137212191 137212238 -47076424 + AT_rich Low_complexity Low_complexity 1 47 0 1666 258 60 2 chr4 137212238 137212669 -47075993 - MLT2B1 LTR ERVL -64 456 1 275 245 21 32 chr4 137212685 137212779 -47075883 + L1MEd LINE L1 971 1063 -5056 22 0 0 0 chr4 137212982 137213004 -47075658 + AT_rich Low_complexity Low_complexity 1 22 0 341 269 114 26 chr4 137213578 137213771 -47074891 + L1MEd LINE L1 2914 3123 -3006 385 285 99 2 chr4 137213931 137214143 -47074519 + L1ME3 LINE L1 5705 5936 -234 480 314 55 28 chr4 137214158 137214413 -47074249 + L2 LINE L2 527 788 -2526 1243 287 228 3 chr4 137214544 137215132 -47073530 + L2 LINE L2 1384 2103 -1211 1435 174 16 114 chr4 137215159 137215544 -47073118 + MER7A DNA MER2_type 2 346 0 639 276 81 68 chr4 137215547 137215855 -47072807 + L2 LINE L2 2143 2454 -860 439 270 32 140 chr4 137215857 137216172 -47072490 + L2 LINE L2 2585 2865 -449 444 304 14 58 chr4 137216286 137216493 -47072169 + L2 LINE L2 3116 3313 0 1870 268 94 21 chr4 137216986 137217698 -47070964 - L1MEc LINE L1 -5587 809 46 212 330 0 21 chr4 137217765 137217862 -47070800 + CT-rich Low_complexity Low_complexity 2 96 0 22 0 0 0 chr4 137218186 137218208 -47070454 + AT_rich Low_complexity Low_complexity 1 22 0 344 310 98 48 chr4 137218886 137219221 -47069441 + L1M4 LINE L1 4357 4708 -1438 311 316 18 9 chr4 137219524 137219638 -47069024 + CT-rich Low_complexity Low_complexity 6 120 0 1170 223 34 17 chr4 137220506 137220744 -47067918 + REP3 LTR ERV 1 242 -320 239 239 194 0 chr4 137220919 137220986 -47067676 + REP3 LTR ERV 483 562 0 396 190 0 0 chr4 137221292 137221371 -47067291 + (TA)n Simple_repeat Simple_repeat 1 79 0 203 61 30 0 chr4 137221434 137221467 -47067195 + (TA)n Simple_repeat Simple_repeat 1 34 0 228 174 0 0 chr4 137221475 137221521 -47067141 - LTR66 LTR ERVL -171 439 394 1783 162 0 26 chr4 137221531 137221833 -47066829 - AluJb SINE Alu -14 298 5 267 361 16 8 chr4 137222007 137222129 -47066533 + L2 LINE L2 3190 3312 -1 189 107 0 0 chr4 137222140 137222168 -47066494 + (CATAA)n Simple_repeat Simple_repeat 2 29 0 2252 225 42 0 chr4 137222290 137222787 -47065875 + MLT2B1 LTR ERVL 3 520 0 8181 106 30 39 chr4 137223053 137224284 -47064378 - HSMAR1 DNA Mariner 0 1287 67 2344 67 0 10 chr4 137224284 137224581 -47064081 + AluY SINE Alu 1 294 -17 8181 106 30 39 chr4 137224581 137224648 -47064014 - HSMAR1 DNA Mariner -1220 67 1 1266 246 101 12 chr4 137225462 137225880 -47062782 + MLT1C LTR MaLR 12 466 -1 1197 330 127 20 chr4 137226170 137226770 -47061892 - L2 LINE L2 -1537 1777 1114 21 0 0 0 chr4 137228551 137228572 -47060090 + AT_rich Low_complexity Low_complexity 1 21 0 211 328 16 16 chr4 137229395 137229459 -47059203 - MIR SINE MIR -55 153 90 274 357 20 52 chr4 137230982 137231234 -47057428 - MIR SINE MIR -3 259 16 252 384 17 43 chr4 137231336 137231568 -47057094 + L2 LINE L2 2748 2973 -341 1483 229 83 7 chr4 137231640 137232051 -47056611 - L1MD2 LINE L1 -4 6355 5914 257 238 88 25 chr4 137232102 137232182 -47056480 - L1MC3 LINE L1 -14 7771 7687 1935 176 163 121 chr4 137232294 137232620 -47056042 - L1MC3 LINE L1 -261 7524 7213 242 288 12 12 chr4 137232620 137232700 -47055962 - MLT1F1 LTR MaLR -450 117 38 1935 176 163 121 chr4 137232700 137233086 -47055576 - L1MC3 LINE L1 -572 7213 6700 942 237 63 36 chr4 137233084 137233535 -47055127 - L1MD2 LINE L1 -278 5884 5429 * 198 167 0 0 chr4 137233560 137233596 -47055066 + GA-rich Low_complexity Low_complexity 1 36 0 399 337 55 17 chr4 137233826 137234007 -47054655 + L2 LINE L2 3118 3305 -8 23 33 0 0 chr4 137234302 137234332 -47054330 + AT_rich Low_complexity Low_complexity 1 30 0 336 175 0 0 chr4 137236898 137236961 -47051701 + (TA)n Simple_repeat Simple_repeat 2 64 0 204 146 0 24 chr4 137237711 137237752 -47050910 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 1146 189 16 117 chr4 137238448 137238824 -47049838 + MLT1A1 LTR MaLR 28 365 0 375 271 0 10 chr4 137238825 137238921 -47049741 + MLT1A1-int LTR MaLR 3 97 -1554 * 5101 176 36 8 chr4 137238918 137240789 -47047873 - L1MA7 LINE L1 -5 6286 4373 2615 252 127 13 chr4 137240829 137241579 -47047083 + MLT1A1-int LTR MaLR 901 1735 0 1094 187 27 117 chr4 137241579 137241980 -47046682 + MLT1A1 LTR MaLR 1 365 0 570 301 65 35 chr4 137242010 137242408 -47046254 + L1MC/D LINE L1 5330 5739 -2069 21 0 0 0 chr4 137242765 137242786 -47045876 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr4 137243901 137243925 -47044737 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 603 281 90 43 chr4 137244046 137244345 -47044317 - LTR53 LTR ERVL -2 517 205 2758 175 40 6 chr4 137244545 137245047 -47043615 + MER44D DNA MER2_type 2 575 -30 1938 174 39 33 chr4 137245068 137245615 -47043047 - MLT2A2 LTR ERVL 0 554 1 2127 99 10 10 chr4 137246226 137246518 -47042144 + AluSx SINE Alu 11 302 -10 251 368 68 0 chr4 137247688 137247821 -47040841 + MIR SINE MIR 120 261 -1 185 296 136 11 chr4 137247828 137247916 -47040746 - MIR SINE MIR -153 109 11 23 54 0 0 chr4 137249646 137249683 -47038979 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr4 137250310 137250339 -47038323 + AT_rich Low_complexity Low_complexity 1 29 0 27 49 0 0 chr4 137250410 137250451 -47038211 + AT_rich Low_complexity Low_complexity 1 41 0 219 413 25 16 chr4 137250582 137250703 -47037959 + L2 LINE L2 3151 3272 0 481 332 103 15 chr4 137251511 137251900 -47036762 + MARNA DNA Mariner 11 433 -153 2000 93 24 10 chr4 137252615 137252905 -47035757 - AluY SINE Alu -17 294 1 1090 167 13 53 chr4 137254644 137254871 -47033791 + MER20 DNA MER1_type 2 219 0 305 242 0 0 chr4 137255548 137255610 -47033052 + L2 LINE L2 3252 3313 0 676 201 7 14 chr4 137255791 137255935 -47032727 - FLAM_C SINE Alu 0 143 1 330 269 0 43 chr4 137255950 137256043 -47032619 + L1MC4 LINE L1 6614 6702 -1340 265 96 0 39 chr4 137256046 137256092 -47032570 + (TA)n Simple_repeat Simple_repeat 2 46 0 2276 87 0 0 chr4 137256092 137256381 -47032281 - AluY SINE Alu -22 289 1 197 324 141 0 chr4 137256650 137256721 -47031941 + MIR SINE MIR 27 107 -101 210 150 0 0 chr4 137257246 137257286 -47031376 + (A)n Simple_repeat Simple_repeat 1 40 0 2060 108 14 0 chr4 137262218 137262505 -47026157 - AluSp SINE Alu -22 291 1 724 262 16 16 chr4 137263907 137264090 -47024572 - MER58A DNA MER1_type 0 224 42 795 283 73 7 chr4 137264593 137265020 -47023642 - L1M4 LINE L1 -3532 2614 2160 207 0 0 0 chr4 137265600 137265623 -47023039 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2049 126 7 3 chr4 137266259 137266568 -47022094 + AluSx SINE Alu 1 310 -2 3521 186 40 1 chr4 137267281 137268001 -47020661 + L1MA8 LINE L1 3669 4416 -1730 * 5318 146 82 4 chr4 137267992 137269393 -47019269 + L1MA8 LINE L1 4789 6289 -2 262 354 87 24 chr4 137269432 137269765 -47018897 - L2 LINE L2 0 3313 2960 814 174 70 17 chr4 137269988 137270160 -47018502 - MLT2D LTR ERVL -233 181 1 499 313 80 38 chr4 137270536 137271012 -47017650 - HERV16 LTR ERVL -1039 3957 3462 813 322 79 32 chr4 137271027 137271468 -47017194 - HERV16 LTR ERVL -2339 2657 2196 748 303 68 0 chr4 137271821 137272042 -47016620 - HERV16 LTR ERVL -2981 2015 1780 728 358 87 16 chr4 137272150 137272589 -47016073 - HERV16 LTR ERVL -3422 1574 1105 1453 290 34 11 chr4 137272804 137273101 -47015561 - LTR16B LTR ERVL 0 464 152 3069 159 2 0 chr4 137273101 137273597 -47015065 + LOR1a LTR ERV1 1 497 0 1453 290 34 11 chr4 137273597 137273740 -47014922 - LTR16B LTR ERVL -312 152 14 251 306 0 16 chr4 137273798 137273860 -47014802 + MLT1J1 LTR MaLR 254 314 -132 2086 123 27 0 chr4 137274272 137274572 -47014090 - AluSx SINE Alu -2 310 3 207 284 0 15 chr4 137275277 137275344 -47013318 + CT-rich Low_complexity Low_complexity 2 67 0 3540 138 27 3 chr4 137277015 137277604 -47011058 + LTR26 LTR ERV1 1 603 0 204 301 105 21 chr4 137277890 137278033 -47010629 + MIR SINE MIR 102 256 -6 2022 124 21 7 chr4 137279644 137279935 -47008727 - AluSq SINE Alu -18 295 1 1056 139 72 56 chr4 137279946 137280197 -47008465 - L1MA10 LINE L1 -1 6333 6079 234 105 0 0 chr4 137281531 137281569 -47007093 + (CA)n Simple_repeat Simple_repeat 2 39 0 2093 135 0 3 chr4 137281817 137282128 -47006534 - AluSx SINE Alu -2 310 1 264 295 13 0 chr4 137282131 137282209 -47006453 - L2 LINE L2 -83 3230 3152 275 279 0 0 chr4 137282297 137282365 -47006297 + MLT1G1 LTR MaLR 1 68 -527 * 814 323 109 30 chr4 137282363 137282791 -47005871 + MLT1G1 LTR MaLR 13 569 -26 35 71 0 0 chr4 137282825 137282895 -47005767 + AT_rich Low_complexity Low_complexity 1 70 0 355 306 39 71 chr4 137283063 137283344 -47005318 + MLT1G1-int LTR MaLR 332 603 -768 268 288 42 17 chr4 137283430 137283548 -47005114 - MLT1J LTR MaLR -150 361 241 327 327 33 13 chr4 137283567 137283720 -47004942 + MIR SINE MIR 91 246 -16 316 327 77 15 chr4 137284191 137284582 -47004080 - L1ME LINE L1 -4574 1822 1408 215 170 21 0 chr4 137284582 137284629 -47004033 + (TA)n Simple_repeat Simple_repeat 2 49 0 552 161 77 23 chr4 137284629 137284759 -47003903 - L1MC3 LINE L1 -50 7735 7599 409 156 39 0 chr4 137284870 137284945 -47003717 - MER2 DNA MER2_type -138 207 130 2858 157 40 6 chr4 137284945 137285447 -47003215 - Tigger1 DNA MER2_type 0 2418 1900 6307 142 97 50 chr4 137285450 137286192 -47002470 - L1MCa LINE L1 -3948 2478 1773 2258 71 3 32 chr4 137286192 137286503 -47002159 - AluY SINE Alu -9 302 1 6307 142 97 50 chr4 137286503 137286674 -47001988 - L1MCa LINE L1 -4653 1773 1612 1026 213 45 84 chr4 137286674 137287054 -47001608 - MLT1A1 LTR MaLR 0 365 1 6307 142 97 50 chr4 137287054 137287166 -47001496 - L1MCa LINE L1 -4814 1612 1507 204 40 0 0 chr4 137287166 137287191 -47001471 + (TTA)n Simple_repeat Simple_repeat 2 26 0 6307 142 97 50 chr4 137287191 137287686 -47000976 - L1MCa LINE L1 -4919 1507 966 180 0 0 0 chr4 137287687 137287707 -47000955 + (TG)n Simple_repeat Simple_repeat 1 20 0 1597 164 7 36 chr4 137287710 137287991 -47000671 - AluSx SINE Alu -36 276 4 2528 231 9 2 chr4 137287992 137288517 -47000145 - L1MCa LINE L1 -5880 546 18 377 294 64 76 chr4 137288762 137289510 -46999152 - L1ME LINE L1 -5056 1149 410 384 284 9 17 chr4 137289651 137289767 -46998895 - L1ME LINE L1 -5620 585 471 22 0 0 0 chr4 137290983 137291005 -46997657 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 137291700 137291721 -46996941 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr4 137293149 137293198 -46995464 + AT_rich Low_complexity Low_complexity 1 49 0 2434 163 28 4 chr4 137293896 137294369 -46994293 - L1MA4 LINE L1 -5 6295 5812 29136 126 10 58 chr4 137294385 137300855 -46987807 - L1PA8 LINE L1 -8 6164 12 4190 186 20 26 chr4 137300872 137301222 -46987440 - L1MA4 LINE L1 -463 5828 5477 1845 148 3 17 chr4 137301222 137301520 -46987142 - AluSq SINE Alu -16 297 4 4190 186 20 26 chr4 137301520 137302569 -46986093 - L1MA4 LINE L1 -814 5477 4445 2181 115 0 3 chr4 137303080 137303392 -46985270 + AluY SINE Alu 1 311 0 22 0 0 0 chr4 137303845 137303867 -46984795 + AT_rich Low_complexity Low_complexity 1 22 0 396 267 83 44 chr4 137304216 137304396 -46984266 + MIR SINE MIR 64 250 -12 344 338 40 14 chr4 137304447 137304595 -46984067 - MIR SINE MIR -36 226 75 183 42 0 0 chr4 137304923 137304947 -46983715 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1826 79 79 0 chr4 137304958 137305224 -46983438 - AluY SINE Alu -24 287 1 22 0 0 0 chr4 137306996 137307018 -46981644 + AT_rich Low_complexity Low_complexity 1 22 0 2051 107 14 0 chr4 137307652 137307941 -46980721 - AluY SINE Alu -18 293 1 349 221 58 0 chr4 137308217 137308303 -46980359 + LTR16A1 LTR ERVL 23 113 -344 1627 190 3 10 chr4 137309069 137309374 -46979288 - AluJb SINE Alu -9 303 1 388 287 172 19 chr4 137310136 137310293 -46978369 - MER5A DNA MER1_type 0 189 9 268 315 60 22 chr4 137311455 137311639 -46977023 + MLT1K LTR MaLR 394 584 -4 21 36 0 0 chr4 137311651 137311679 -46976983 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 137312910 137312932 -46975730 + AT_rich Low_complexity Low_complexity 1 22 0 332 418 96 14 chr4 137313203 137313629 -46975033 - L2 LINE L2 -4 3268 2808 1157 157 0 0 chr4 137313702 137313874 -46974788 + FRAM SINE Alu 1 168 -8 25 0 0 0 chr4 137314415 137314440 -46974222 + AT_rich Low_complexity Low_complexity 1 25 0 181 186 0 23 chr4 137315074 137315117 -46973545 + L2 LINE L2 3269 3310 -3 2392 75 0 3 chr4 137315180 137315486 -46973176 + AluY SINE Alu 1 305 -6 5582 79 60 3 chr4 137315713 137316494 -46972168 - LTR12 LTR ERV1 0 826 1 1923 179 34 65 chr4 137316593 137316662 -46972000 - Tigger2a DNA MER2_type -2274 434 364 1914 116 4 4 chr4 137316662 137316929 -46971733 + AluSx SINE Alu 1 267 -45 1923 179 34 65 chr4 137316929 137317307 -46971355 - Tigger2a DNA MER2_type -2344 364 1 2439 175 24 18 chr4 137317628 137318136 -46970526 - L1MA7 LINE L1 0 6291 5781 4557 131 32 3 chr4 137318136 137318862 -46969800 - Tigger1 DNA MER2_type -5 2413 1667 2567 143 39 2 chr4 137318855 137319295 -46969367 - Tigger1 DNA MER2_type -1961 457 2 * 8419 201 43 20 chr4 137319295 137321746 -46966916 - L1MA7 LINE L1 -503 5788 3287 21 0 0 0 chr4 137321932 137321953 -46966709 + AT_rich Low_complexity Low_complexity 1 21 0 386 324 88 6 chr4 137322192 137322362 -46966300 - MIR SINE MIR 0 262 79 211 227 23 0 chr4 137322411 137322455 -46966207 + (TTCA)n Simple_repeat Simple_repeat 3 47 0 4169 172 58 32 chr4 137323300 137324200 -46964462 + L1MB4 LINE L1 5258 6180 0 4630 189 93 101 chr4 137324248 137324815 -46963847 - L1MC3 LINE L1 -22 7763 7193 272 330 0 0 chr4 137324815 137324906 -46963756 - MLT1F1 LTR MaLR -442 125 35 4630 189 93 101 chr4 137324906 137325801 -46962861 - L1MC3 LINE L1 -592 7193 6222 307 248 91 16 chr4 137325804 137325925 -46962737 - L2 LINE L2 -263 3050 2921 181 250 39 0 chr4 137326039 137326091 -46962571 - MER5A DNA MER1_type 0 189 136 592 219 126 7 chr4 137326647 137326798 -46961864 + MIR SINE MIR 2 170 -92 355 316 102 46 chr4 137327670 137328043 -46960619 - HAL1 LINE L1 -1918 589 196 21 0 0 0 chr4 137328493 137328514 -46960148 + AT_rich Low_complexity Low_complexity 1 21 0 302 338 98 19 chr4 137329164 137329481 -46959181 - L2 LINE L2 -778 2536 2195 24 32 0 0 chr4 137329495 137329526 -46959136 + AT_rich Low_complexity Low_complexity 1 31 0 25 65 0 0 chr4 137330849 137330895 -46957767 + AT_rich Low_complexity Low_complexity 1 46 0 192 294 69 20 chr4 137331712 137331814 -46956848 + MIR SINE MIR 132 238 -24 4039 191 29 12 chr4 137333056 137334838 -46953824 + L1MA10 LINE L1 4446 6299 -35 213 340 113 0 chr4 137335029 137335135 -46953527 - MIR SINE MIR -9 253 136 758 267 130 38 chr4 137335356 137335709 -46952953 - MLT1G1 LTR MaLR -242 348 1 773 204 54 0 chr4 137335855 137336022 -46952640 + MER3 DNA MER1_type 1 129 -80 2244 129 39 8 chr4 137336034 137336398 -46952264 + THE1C LTR MaLR 1 375 0 22 56 0 0 chr4 137336619 137336655 -46952007 + AT_rich Low_complexity Low_complexity 1 36 0 469 350 55 0 chr4 137336934 137337097 -46951565 - MER5B DNA MER1_type -3 175 4 2241 110 0 0 chr4 137337428 137337729 -46950933 - AluSp SINE Alu -10 303 3 24 0 0 0 chr4 137337736 137337760 -46950902 + AT_rich Low_complexity Low_complexity 1 24 0 512 280 62 43 chr4 137338781 137338992 -46949670 - MLT1L LTR MaLR -373 242 28 277 254 25 14 chr4 137339003 137339122 -46949540 - MER5A DNA MER1_type 0 189 10 21 36 0 0 chr4 137339538 137339566 -46949096 + AT_rich Low_complexity Low_complexity 1 28 0 27 49 0 0 chr4 137339602 137339643 -46949019 + AT_rich Low_complexity Low_complexity 1 41 0 3801 156 28 28 chr4 137340073 137340784 -46947878 + MER50 LTR ERV1 1 711 -23 331 323 32 0 chr4 137341117 137341210 -46947452 + L2 LINE L2 3213 3308 -5 645 290 114 33 chr4 137342146 137342453 -46946209 + MLT1J2 LTR MaLR 115 446 -4 245 250 42 14 chr4 137342666 137342738 -46945924 - MIR SINE MIR -71 191 118 656 126 4 97 chr4 137343133 137343371 -46945291 + AluY SINE Alu 1 216 -95 282 92 92 0 chr4 137344488 137344553 -46944109 + T-rich Low_complexity Low_complexity 5 75 0 861 237 202 0 chr4 137344557 137344810 -46943852 - AluJb SINE Alu -5 307 4 34 42 0 0 chr4 137345367 137345415 -46943247 + AT_rich Low_complexity Low_complexity 1 48 0 1701 149 119 12 chr4 137345485 137345821 -46942841 + THE1C LTR MaLR 1 372 -3 9663 114 71 8 chr4 137345824 137347310 -46941352 + THE1C-int LTR MaLR 1 1580 0 1876 156 40 32 chr4 137347310 137347682 -46940980 + THE1C LTR MaLR 1 375 0 243 272 37 0 chr4 137348248 137348329 -46940333 + L1MC5 LINE L1 6985 7068 -893 1777 174 55 14 chr4 137348334 137348697 -46939965 + MLT1B LTR MaLR 6 383 -7 328 259 111 86 chr4 137349025 137349620 -46939042 + L1MC5 LINE L1 7303 7912 -49 1119 199 24 31 chr4 137349753 137350317 -46938345 + L1MA7 LINE L1 3623 4335 -1811 262 269 108 0 chr4 137350399 137350492 -46938170 - HAL1 LINE L1 -671 1836 1734 386 191 0 0 chr4 137350497 137350565 -46938097 + Tigger2 DNA MER2_type 2 69 -2649 361 242 0 0 chr4 137350578 137350644 -46938018 + Tigger2 DNA MER2_type 2653 2718 0 4915 177 34 46 chr4 137350650 137351025 -46937637 + L1MA7 LINE L1 4339 4717 -1574 1461 222 6 16 chr4 137351025 137351340 -46937322 + AluJo SINE Alu 1 312 0 4915 177 34 46 chr4 137351340 137351651 -46937011 + L1MA7 LINE L1 4717 5030 -1261 776 95 9 0 chr4 137351651 137351767 -46936895 + L1PB1 LINE L1 6035 6151 0 4915 177 34 46 chr4 137351767 137353066 -46935596 + L1MA7 LINE L1 5030 6285 -6 23 0 0 0 chr4 137354298 137354321 -46934341 + AT_rich Low_complexity Low_complexity 1 23 0 487 318 81 0 chr4 137354453 137354626 -46934036 - MIR SINE MIR -72 190 4 216 97 0 0 chr4 137355275 137355306 -46933356 + (TC)n Simple_repeat Simple_repeat 2 32 0 270 0 0 0 chr4 137355309 137355339 -46933323 + (CA)n Simple_repeat Simple_repeat 2 31 0 1438 254 116 22 chr4 137356733 137357241 -46931421 + MLT1E2 LTR MaLR 19 574 -52 21 0 0 0 chr4 137357774 137357795 -46930867 + AT_rich Low_complexity Low_complexity 1 21 0 2304 142 77 12 chr4 137358100 137358531 -46930131 - MER65C LTR ERV1 0 461 3 22 0 0 0 chr4 137358692 137358714 -46929948 + AT_rich Low_complexity Low_complexity 1 22 0 197 0 0 67 chr4 137358962 137358992 -46929670 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 361 242 89 111 chr4 137359145 137359247 -46929415 + MLT1I LTR MaLR 220 318 -91 1436 197 7 33 chr4 137359247 137359546 -46929116 - AluJo SINE Alu -20 292 2 361 242 89 111 chr4 137359546 137359633 -46929029 + MLT1I LTR MaLR 318 405 -4 236 280 35 70 chr4 137360098 137360173 -46928489 - HAL1 LINE L1 -1940 567 498 1084 253 33 27 chr4 137360173 137360541 -46928121 + MLT1A2 LTR MaLR 1 370 -4 236 280 35 70 chr4 137360541 137360608 -46928054 - HAL1 LINE L1 -2009 498 430 1189 204 83 8 chr4 137360652 137360917 -46927745 - MLT1C LTR MaLR 0 467 183 252 0 0 0 chr4 137360928 137360956 -46927706 + (TG)n Simple_repeat Simple_repeat 2 29 0 1014 251 86 23 chr4 137360956 137361477 -46927185 - L1MD3 LINE L1 -20 7975 5755 2470 232 30 55 chr4 137361503 137362827 -46925835 - L1MDa LINE L1 -2948 3592 2307 253 295 39 0 chr4 137362848 137362926 -46925736 + L1MD2 LINE L1 6023 6103 -256 261 180 82 0 chr4 137363458 137363519 -46925143 + MLT1E2 LTR MaLR 38 103 -523 910 123 0 0 chr4 137363546 137363684 -46924978 - L1PA8 LINE L1 -7 6165 6028 6399 105 8 15 chr4 137363784 137364203 -46924459 - L1PA8A LINE L1 -352 5779 5359 2167 123 0 0 chr4 137364203 137364503 -46924159 - AluSg SINE Alu -10 300 1 6399 105 8 15 chr4 137364503 137365506 -46923156 - L1PA8A LINE L1 -772 5359 4365 264 224 15 0 chr4 137366292 137366359 -46922303 + MER82 DNA MER2_type 10 77 -576 714 154 24 0 chr4 137366365 137366488 -46922174 + FLAM_C SINE Alu 1 126 -17 194 0 39 0 chr4 137366602 137366628 -46922034 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 2050 101 0 4 chr4 137366631 137366908 -46921754 - AluSg SINE Alu -34 276 1 234 367 68 23 chr4 137367382 137367559 -46921103 - MIR SINE MIR -58 204 20 402 181 29 0 chr4 137367993 137368098 -46920564 + (TA)n Simple_repeat Simple_repeat 2 109 0 241 272 11 33 chr4 137368098 137368190 -46920472 - L1MC4 LINE L1 -1339 6703 6614 * 246 282 24 0 chr4 137368165 137368250 -46920412 + L1MC4 LINE L1 6617 6703 -1339 * 285 213 11 32 chr4 137368218 137368312 -46920350 - L1MC4 LINE L1 -1339 6703 6612 282 292 0 0 chr4 137368321 137368410 -46920252 + L1MC4 LINE L1 6614 6702 -1340 * 295 244 47 0 chr4 137368377 137368463 -46920199 - L1MC4 LINE L1 -1339 6703 6614 224 244 38 0 chr4 137368480 137368611 -46920051 + (TATATG)n Simple_repeat Simple_repeat 3 138 0 270 307 23 0 chr4 137368611 137368699 -46919963 + (CATA)n Simple_repeat Simple_repeat 1 90 0 462 339 23 0 chr4 137368710 137368884 -46919778 + (CATA)n Simple_repeat Simple_repeat 3 180 0 272 286 17 11 chr4 137368944 137369119 -46919543 + (CATA)n Simple_repeat Simple_repeat 3 178 0 183 317 21 0 chr4 137369130 137369275 -46919387 + (CATA)n Simple_repeat Simple_repeat 3 150 0 209 266 5 49 chr4 137369364 137369548 -46919114 + (CATA)n Simple_repeat Simple_repeat 3 178 0 243 266 11 21 chr4 137369550 137369644 -46919018 + L1MC4 LINE L1 6617 6709 -1333 1024 245 171 10 chr4 137369822 137370255 -46918407 - L1MC4 LINE L1 -7 7901 7369 277 260 96 0 chr4 137370286 137370390 -46918272 - L1MC4 LINE L1 -642 7400 7287 1446 233 27 27 chr4 137370455 137370829 -46917833 - L1MC4 LINE L1 -969 7073 6700 434 259 71 29 chr4 137371234 137371404 -46917258 - Charlie8 DNA MER1_type -2153 264 88 210 333 28 46 chr4 137371599 137371707 -46916955 - L2 LINE L2 0 3313 3208 608 146 38 7 chr4 137371790 137372222 -46916440 + (TA)n Simple_repeat Simple_repeat 1 445 0 237 345 67 12 chr4 137373018 137373183 -46915479 - L2 LINE L2 -457 2857 2684 23 86 0 0 chr4 137373275 137373333 -46915329 + AT_rich Low_complexity Low_complexity 1 58 0 23 54 0 0 chr4 137374335 137374372 -46914290 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr4 137374539 137374574 -46914088 + AT_rich Low_complexity Low_complexity 1 35 0 1844 196 8 50 chr4 137374582 137374981 -46913681 + MLT1B LTR MaLR 1 382 -8 21 36 0 0 chr4 137375232 137375260 -46913402 + AT_rich Low_complexity Low_complexity 1 28 0 265 273 121 28 chr4 137376827 137377092 -46911570 + L1MC1 LINE L1 1119 1531 -5116 222 292 17 92 chr4 137377334 137377454 -46911208 - L2 LINE L2 -783 2531 2421 301 251 11 120 chr4 137377457 137377632 -46911030 - L2 LINE L2 0 3313 3158 894 215 27 5 chr4 137377998 137378221 -46910441 + L1MC1 LINE L1 4959 5186 -1458 1283 173 0 118 chr4 137378322 137378652 -46910010 + AluJb SINE Alu 5 295 -7 965 195 39 15 chr4 137378668 137378873 -46909789 - MER2 DNA MER2_type -135 210 1 3192 187 32 24 chr4 137378964 137380059 -46908603 + L1MC1 LINE L1 5256 6360 -471 1327 69 0 0 chr4 137380241 137380415 -46908247 + LTR12 LTR ERV1 541 714 0 291 301 48 10 chr4 137380497 137380600 -46908062 - MIR SINE MIR -82 180 74 250 274 95 11 chr4 137380728 137380823 -46907839 + L1MC4 LINE L1 5439 5541 -2267 338 215 29 168 chr4 137380892 137380978 -46907684 + MER104 DNA Tc2 1 43 -1855 2344 97 0 3 chr4 137380978 137381289 -46907373 - AluY SINE Alu -1 310 1 338 215 29 168 chr4 137381289 137381411 -46907251 + MER104 DNA Tc2 43 180 0 320 303 22 0 chr4 137382320 137382409 -46906253 - L1MC4 LINE L1 -1334 6708 6618 316 239 45 23 chr4 137382433 137382521 -46906141 - L1MC4 LINE L1 -1339 6703 6614 302 284 0 42 chr4 137382442 137382537 -46906125 + L1MC4 LINE L1 6617 6707 -1335 * 279 294 126 35 chr4 137384642 137384873 -46903789 - L1ME LINE L1 -487 5634 5383 543 96 0 0 chr4 137384950 137385023 -46903639 - MADE1 DNA Mariner 0 80 8 226 270 0 34 chr4 137385088 137385177 -46903485 + A-rich Low_complexity Low_complexity 4 89 0 721 311 72 0 chr4 137385451 137385686 -46902976 + MIR SINE MIR 11 262 0 23 92 0 0 chr4 137385961 137386026 -46902636 + AT_rich Low_complexity Low_complexity 1 65 0 1222 143 34 46 chr4 137386539 137386776 -46901886 + AluSp SINE Alu 1 234 -79 1357 220 120 11 chr4 137386803 137387171 -46901491 - MSTB1 LTR MaLR -24 408 1 316 312 50 28 chr4 137387203 137387344 -46901318 + L2 LINE L2 3163 3306 -7 263 271 167 0 chr4 137387616 137387712 -46900950 - L1ME LINE L1 -281 5889 5778 1035 237 109 15 chr4 137387717 137388055 -46900607 + MLT1A2 LTR MaLR 5 374 0 321 301 19 13 chr4 137388220 137388376 -46900286 - L1ME LINE L1 -2339 5469 5313 376 333 94 4 chr4 137388439 137388706 -46899956 - L1ME LINE L1 -914 5232 4942 26 0 0 0 chr4 137388761 137388787 -46899875 + AT_rich Low_complexity Low_complexity 1 26 0 235 368 46 48 chr4 137389203 137389597 -46899065 + MLT1K LTR MaLR 168 560 -28 477 0 0 0 chr4 137389970 137390023 -46898639 + (TG)n Simple_repeat Simple_repeat 2 54 0 1079 267 60 55 chr4 137390318 137390567 -46898095 - MLT1D LTR MaLR -69 436 183 2113 114 27 0 chr4 137390567 137390864 -46897798 - AluSx SINE Alu -7 305 1 1079 267 60 55 chr4 137390864 137391048 -46897614 - MLT1D LTR MaLR -322 183 1 11694 165 68 23 chr4 137391445 137391692 -46896970 - L1PBa LINE L1 -1896 4966 4732 2216 101 0 3 chr4 137391692 137391988 -46896674 - AluSq SINE Alu -18 295 1 11694 165 68 23 chr4 137391988 137394254 -46894408 - L1PBa LINE L1 -2130 4732 2199 840 62 0 9 chr4 137394254 137394366 -46894296 - L1PA7 LINE L1 0 6154 6044 11694 165 68 23 chr4 137394366 137396015 -46892647 - L1PBa LINE L1 -4663 2199 625 1079 159 5 0 chr4 137396012 137396201 -46892461 - L1PBa LINE L1 -6668 195 6 * 354 296 52 58 chr4 137397316 137397488 -46891174 - L1ME3A LINE L1 -38 6132 5962 249 271 49 41 chr4 137397855 137397977 -46890685 - L1ME LINE L1 -5946 124 2 2225 121 116 13 chr4 137398042 137398430 -46890232 + MSTA LTR MaLR 1 428 0 330 317 41 7 chr4 137398817 137398962 -46889700 - L1ME3A LINE L1 -533 5637 5488 23 33 0 0 chr4 137400459 137400489 -46888173 + AT_rich Low_complexity Low_complexity 1 30 0 1361 230 7 7 chr4 137401104 137401391 -46887271 + AluJo SINE Alu 1 287 -15 226 243 14 0 chr4 137401448 137401522 -46887140 + (TA)n Simple_repeat Simple_repeat 2 76 0 320 329 26 51 chr4 137401595 137401829 -46886833 - L2 LINE L2 -493 2821 2594 202 316 203 0 chr4 137402208 137402341 -46886321 + MIR SINE MIR 97 256 -6 1683 153 51 77 chr4 137402468 137402821 -46885841 - MER7A DNA MER2_type -4 342 1 380 109 0 16 chr4 137403878 137403942 -46884720 + (TC)n Simple_repeat Simple_repeat 2 64 0 212 276 69 35 chr4 137404302 137404389 -46884273 + MIR3 SINE MIR 89 178 -30 357 215 0 0 chr4 137406774 137406867 -46881795 + (TA)n Simple_repeat Simple_repeat 2 94 0 200 211 0 0 chr4 137406914 137406952 -46881710 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 259 317 89 8 chr4 137409288 137409411 -46879251 + MIR SINE MIR 102 234 -28 886 243 46 41 chr4 137409481 137409793 -46878869 - LTR37A LTR ERV1 -12 414 98 2208 102 0 3 chr4 137409793 137410086 -46878576 + AluSg SINE Alu 1 292 -18 886 243 46 41 chr4 137410086 137410139 -46878523 - LTR37A LTR ERV1 -328 98 47 5032 151 27 13 chr4 137410418 137412164 -46876498 - L1PA16 LINE L1 -1 6165 4405 1224 280 32 85 chr4 137412202 137412403 -46876259 - MER31-int LTR ERV1 -839 4097 3887 3285 111 26 12 chr4 137412403 137412907 -46875755 - MER9 LTR ERVK 0 511 1 1224 280 32 85 chr4 137412907 137413519 -46875143 - MER31-int LTR ERV1 -1049 3887 3327 410 284 35 86 chr4 137413925 137414273 -46874389 - MER31-int LTR ERV1 -1949 2987 2658 260 180 20 0 chr4 137414677 137414727 -46873935 + Charlie1 DNA MER1_type 50 100 -2661 * 510 224 93 58 chr4 137414705 137414910 -46873752 + Charlie1 DNA MER1_type 2550 2761 0 261 223 79 58 chr4 137414953 137415092 -46873570 - MER31-int LTR ERV1 -2782 2154 2013 23 33 0 0 chr4 137415435 137415465 -46873197 + AT_rich Low_complexity Low_complexity 1 30 0 330 234 51 109 chr4 137415739 137415995 -46872667 - MER31-int LTR ERV1 -3642 1294 1054 930 216 38 24 chr4 137416359 137416651 -46872011 - LTR37A LTR ERV1 -74 352 57 2016 118 14 0 chr4 137417643 137417932 -46870730 + AluSc SINE Alu 1 293 -16 357 306 10 0 chr4 137418521 137418619 -46870043 - MIR SINE MIR -93 169 71 23 33 0 0 chr4 137418629 137418659 -46870003 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr4 137419519 137419542 -46869120 + AT_rich Low_complexity Low_complexity 1 23 0 223 216 250 0 chr4 137419784 137419872 -46868790 + L2 LINE L2 2292 2401 -913 861 306 90 65 chr4 137419882 137420597 -46868065 + L2 LINE L2 2550 3313 0 2090 143 3 0 chr4 137421487 137421795 -46866867 - AluSx SINE Alu -3 309 1 13980 136 25 22 chr4 137421799 137423347 -46865315 + Tigger1 DNA MER2_type 45 1604 -814 1856 164 0 10 chr4 137423347 137423678 -46864984 + AluSx SINE Alu 1 312 0 13980 136 25 22 chr4 137423678 137424496 -46864166 + Tigger1 DNA MER2_type 1604 2418 0 882 201 62 26 chr4 137424496 137424846 -46863816 + MSTB LTR MaLR 1 426 0 2481 221 16 21 chr4 137424846 137425416 -46863246 + MSTB-int LTR MaLR 1 567 -1084 436 298 114 16 chr4 137426240 137426717 -46861945 + L1ME LINE L1 1124 1726 -4837 592 292 54 41 chr4 137426736 137427082 -46861580 + L1ME LINE L1 5112 5468 -932 1711 193 3 0 chr4 137427082 137427387 -46861275 + AluSx SINE Alu 1 306 -6 592 292 54 41 chr4 137427387 137427703 -46860959 + L1ME LINE L1 5468 5778 -622 8225 215 54 9 chr4 137427842 137429982 -46858680 + L1 LINE L1 3064 5299 -847 378 303 105 0 chr4 137430719 137430871 -46857791 + MIR SINE MIR 63 230 -32 23 33 0 0 chr4 137431308 137431338 -46857324 + AT_rich Low_complexity Low_complexity 1 30 0 36 104 0 0 chr4 137432228 137432362 -46856300 + AT_rich Low_complexity Low_complexity 1 134 0 719 112 15 22 chr4 137433352 137433486 -46855176 - L1MA5 LINE L1 0 6300 6168 799 204 46 158 chr4 137433922 137434465 -46854197 - L1MDa LINE L1 -2977 3563 3082 2225 147 23 0 chr4 137434465 137434818 -46853844 + THE1B LTR MaLR 1 361 -3 10184 115 47 9 chr4 137434847 137436369 -46852293 + THE1B-int LTR MaLR 1 1580 0 2181 152 22 0 chr4 137436369 137436725 -46851937 + THE1B LTR MaLR 1 364 0 945 242 76 18 chr4 137436725 137437068 -46851594 - L1MDa LINE L1 -3454 3086 2724 896 217 125 14 chr4 137437092 137437460 -46851202 - L1MDa LINE L1 -3890 2650 2242 1311 221 110 3 chr4 137437477 137437785 -46850877 + MSTD LTR MaLR 56 396 0 2285 254 81 25 chr4 137437785 137439092 -46849570 + L1MD2 LINE L1 1435 2817 -3723 * 4395 248 67 56 chr4 137439089 137441168 -46847494 + L1MD2 LINE L1 3192 5247 -1506 246 32 0 0 chr4 137441168 137441199 -46847463 + (CCAA)n Simple_repeat Simple_repeat 2 32 0 403 182 0 0 chr4 137441200 137441266 -46847396 + AluJ/FLAM SINE Alu 1 66 -246 4395 248 67 56 chr4 137441266 137441613 -46847049 + L1MD2 LINE L1 5247 5589 -1164 1913 134 0 19 chr4 137441613 137441920 -46846742 + AluSc SINE Alu 5 305 -4 4395 248 67 56 chr4 137441920 137442937 -46845725 + L1MD2 LINE L1 5589 6745 -8 338 310 28 35 chr4 137443074 137443216 -46845446 + MIR SINE MIR 2 142 -120 523 258 13 7 chr4 137443639 137443794 -46844868 + MIR SINE MIR 81 236 -26 265 213 0 0 chr4 137444238 137444285 -46844377 + MER20 DNA MER1_type 29 75 -144 26 0 0 0 chr4 137444518 137444544 -46844118 + AT_rich Low_complexity Low_complexity 1 26 0 32 0 0 0 chr4 137444614 137444646 -46844016 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr4 137444690 137444725 -46843937 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr4 137444842 137444864 -46843798 + AT_rich Low_complexity Low_complexity 1 22 0 1597 242 31 117 chr4 137444926 137445575 -46843087 + MLT1E LTR MaLR 1 593 0 1798 177 44 6 chr4 137446366 137446727 -46841935 + THE1C LTR MaLR 1 375 0 1811 164 17 93 chr4 137446888 137447309 -46841353 - MLT2C1 LTR ERVL -8 389 1 23 54 0 0 chr4 137447454 137447491 -46841171 + AT_rich Low_complexity Low_complexity 1 37 0 204 358 17 17 chr4 137447678 137447798 -46840864 - L2 LINE L2 -6 3307 3188 224 299 86 68 chr4 137447803 137447920 -46840742 + MIR3 SINE MIR 59 177 -31 24 0 0 0 chr4 137448469 137448493 -46840169 + AT_rich Low_complexity Low_complexity 1 24 0 599 222 85 28 chr4 137449545 137449721 -46838941 - MER5A DNA MER1_type -1 188 3 23 0 0 0 chr4 137450731 137450754 -46837908 + AT_rich Low_complexity Low_complexity 1 23 0 203 344 31 52 chr4 137451020 137451116 -46837546 - MIR SINE MIR -120 142 49 1741 167 145 5 chr4 137451751 137452123 -46836539 + MSTA LTR MaLR 1 424 -4 22 35 0 0 chr4 137452485 137452514 -46836148 + AT_rich Low_complexity Low_complexity 1 29 0 557 125 0 0 chr4 137453918 137454006 -46834656 - L1MB5 LINE L1 -8 6166 6079 27 0 0 0 chr4 137454469 137454496 -46834166 + AT_rich Low_complexity Low_complexity 1 27 0 1206 149 69 58 chr4 137454644 137454905 -46833757 + MER21A LTR ERV1 1 264 -667 2504 181 88 21 chr4 137454911 137455431 -46833231 + MER21A LTR ERV1 377 931 0 351 273 116 0 chr4 137456063 137456184 -46832478 + MIR SINE MIR 87 221 -41 3628 126 37 69 chr4 137456191 137456859 -46831803 + LTR8 LTR ERV1 1 647 -44 186 103 0 0 chr4 137456893 137456922 -46831740 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1829 177 119 58 chr4 137456922 137457487 -46831175 - LTR38B LTR ERV1 -1 609 11 13535 202 6 2 chr4 137458255 137460687 -46827975 - HERVE LTR ERV1 -4390 3423 983 311 175 12 88 chr4 137460794 137460874 -46827788 + HAL1 LINE L1 859 932 -1575 30 77 0 0 chr4 137460882 137460947 -46827715 + AT_rich Low_complexity Low_complexity 1 65 0 1074 269 71 64 chr4 137460986 137461593 -46827069 + HAL1 LINE L1 1106 1716 -791 1171 234 43 129 chr4 137461593 137462152 -46826510 + MLT2B1 LTR ERVL 2 512 -8 501 289 92 46 chr4 137462156 137462461 -46826201 + HAL1 LINE L1 1711 2029 -478 1758 134 78 0 chr4 137462493 137462777 -46825885 + AluSq SINE Alu 1 306 -7 3378 126 32 53 chr4 137463030 137463939 -46824723 - pTR5 LTR ERV1 0 2220 6 450 0 0 0 chr4 137464299 137464349 -46824313 + (TGG)n Simple_repeat Simple_repeat 3 52 0 1713 135 4 23 chr4 137464359 137464496 -46824166 - AluSq SINE Alu -52 261 130 381 43 0 0 chr4 137464496 137464543 -46824119 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1713 135 4 23 chr4 137464543 137464671 -46823991 - AluSq SINE Alu -183 130 1 285 214 87 32 chr4 137465278 137465404 -46823258 + L1ME LINE L1 5298 5430 -740 24 85 0 0 chr4 137466077 137466136 -46822526 + AT_rich Low_complexity Low_complexity 1 59 0 1839 234 79 2 chr4 137467183 137467665 -46820997 + LTR40a LTR ERVL 1 519 0 254 295 67 0 chr4 137467675 137467780 -46820882 + HERVL40 LTR ERVL 14 125 -5405 218 276 26 0 chr4 137467823 137467899 -46820763 + GA-rich Low_complexity Low_complexity 2 79 0 692 115 0 0 chr4 137467912 137468016 -46820646 - AluY SINE Alu -13 298 195 2296 81 0 0 chr4 137468016 137468312 -46820350 - AluY SINE Alu -15 296 1 313 239 33 11 chr4 137469384 137469476 -46819186 + (CATATA)n Simple_repeat Simple_repeat 6 99 0 203 289 58 0 chr4 137470189 137470241 -46818421 - L2 LINE L2 -13 3259 3205 1523 91 14 0 chr4 137471419 137471627 -46817035 - AluSg/x SINE Alu -14 295 85 716 340 59 42 chr4 137471788 137471898 -46816764 - ERVL LTR ERVL -1831 3933 3826 2113 117 32 67 chr4 137471898 137472273 -46816389 + THE1B LTR MaLR 1 362 -2 716 340 59 42 chr4 137472273 137472877 -46815785 - ERVL LTR ERVL -1938 3826 3207 385 333 8 8 chr4 137472947 137473067 -46815595 - ERVL LTR ERVL -1932 3064 2945 1471 336 56 30 chr4 137473086 137474578 -46814084 - ERVL LTR ERVL -2759 2237 1263 530 335 43 0 chr4 137474608 137474841 -46813821 - ERVL LTR ERVL -3800 1196 954 273 314 107 35 chr4 137475096 137475265 -46813397 - ERVL LTR ERVL -4423 573 393 4515 185 24 20 chr4 137475338 137475462 -46813200 + L1PB4 LINE L1 4292 4414 -1742 2232 108 10 0 chr4 137475462 137475758 -46812904 + AluSx SINE Alu 1 299 -13 4515 185 24 20 chr4 137475758 137477491 -46811171 + L1PB4 LINE L1 4414 6141 -15 23 0 0 0 chr4 137477666 137477689 -46810973 + AT_rich Low_complexity Low_complexity 1 23 0 498 232 32 8 chr4 137477876 137478001 -46810661 - MER94 DNA DNA -6 128 1 254 277 155 26 chr4 137478110 137478265 -46810397 - MIR SINE MIR -57 205 31 2356 88 0 0 chr4 137478571 137478876 -46809786 + AluY SINE Alu 7 311 0 666 47 0 0 chr4 137478906 137478992 -46809670 + AluY SINE Alu 218 303 -8 1069 173 0 48 chr4 137479267 137479538 -46809124 + pTR5 LTR ERV1 741 998 -1440 1749 172 7 0 chr4 137479639 137479912 -46808750 - AluSx SINE Alu -37 275 1 2279 81 7 3 chr4 137481257 137481567 -46807095 + AluY SINE Alu 1 311 0 22 0 0 0 chr4 137481814 137481836 -46806826 + AT_rich Low_complexity Low_complexity 1 22 0 1708 186 3 13 chr4 137482715 137483026 -46805636 + AluSq SINE Alu 1 308 -5 1349 250 0 0 chr4 137484320 137484608 -46804054 - AluJo SINE Alu -24 288 1 2329 181 22 7 chr4 137484630 137485040 -46803622 + MSTB LTR MaLR 1 416 -10 9132 186 18 3 chr4 137485049 137486503 -46802159 + MSTB-int LTR MaLR 1 1483 -168 207 0 0 0 chr4 137486503 137486526 -46802136 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 9132 186 18 3 chr4 137486526 137486691 -46801971 + MSTB-int LTR MaLR 1483 1644 -7 2385 161 24 24 chr4 137486701 137487124 -46801538 + MSTB LTR MaLR 4 426 0 32 75 0 0 chr4 137488337 137488404 -46800258 + AT_rich Low_complexity Low_complexity 1 67 0 293 91 68 0 chr4 137488956 137489000 -46799662 - AluS SINE Alu -230 73 27 375 333 14 0 chr4 137490106 137490244 -46798418 - L1ME LINE L1 -5924 146 7 437 372 54 40 chr4 137490991 137491437 -46797225 + LTR16B LTR ERVL 6 457 -7 306 347 47 40 chr4 137491440 137491714 -46796948 + HERV16 LTR ERVL 1 276 -4720 1024 366 44 17 chr4 137491797 137492461 -46796201 + ERVL LTR ERVL 2949 3594 -2060 1845 148 38 32 chr4 137492461 137492834 -46795828 + THE1C LTR MaLR 1 375 0 1024 366 44 17 chr4 137492834 137493543 -46795119 + ERVL LTR ERVL 3594 4357 -1297 275 176 59 0 chr4 137494278 137494346 -46794316 + MER113 DNA MER1_type? 143 214 -307 267 206 76 98 chr4 137494463 137494555 -46794107 - MIR SINE MIR -136 126 37 519 270 59 0 chr4 137494658 137494810 -46793852 + MER113 DNA MER1_type? 320 480 -41 4723 158 33 15 chr4 137495169 137496042 -46792620 + L1MC1 LINE L1 5444 6332 -1 986 237 152 17 chr4 137496238 137496652 -46792010 - Charlie2a DNA MER1_type -890 1972 1503 848 199 0 0 chr4 137496652 137496793 -46791869 + AluJb SINE Alu 152 292 -20 249 169 34 0 chr4 137496889 137496948 -46791714 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 237 191 132 44 chr4 137496990 137497058 -46791604 - Charlie2a DNA MER1_type -2283 579 506 406 286 90 32 chr4 137497073 137497262 -46791400 - Charlie2a DNA MER1_type -2582 200 1 193 343 56 80 chr4 137498749 137499000 -46789662 + L2 LINE L2 2364 2608 -706 1024 230 29 0 chr4 137499001 137499210 -46789452 + MER58A DNA MER1_type 10 224 0 200 272 118 56 chr4 137499210 137499405 -46789257 + L2 LINE L2 2605 2811 -503 266 367 128 37 chr4 137499720 137500017 -46788645 - L2 LINE L2 -1 3271 2948 1915 129 17 10 chr4 137500018 137500313 -46788349 + AluSx SINE Alu 6 302 -10 338 363 123 9 chr4 137500399 137500699 -46787963 + L2 LINE L2 2742 3070 -202 2243 106 7 0 chr4 137501314 137501606 -46787056 - AluSx SINE Alu -18 294 1 254 297 186 21 chr4 137501903 137502048 -46786614 + MIR SINE MIR 15 183 -79 25 83 0 0 chr4 137503685 137503745 -46784917 + AT_rich Low_complexity Low_complexity 1 60 0 278 50 17 50 chr4 137504449 137504509 -46784153 + (TA)n Simple_repeat Simple_repeat 2 59 0 4704 143 50 24 chr4 137505554 137506432 -46782230 - MER4D LTR ERV1 0 903 3 4915 104 9 10 chr4 137506817 137507509 -46781153 - LTR8 LTR ERV1 0 691 1 3937 98 4 2 chr4 137508732 137509285 -46779377 - MER41A LTR ERV1 0 554 1 2323 91 3 0 chr4 137509576 137509872 -46778790 - AluSp SINE Alu -16 297 1 338 225 47 23 chr4 137510117 137510246 -46778416 + L1ME LINE L1 5623 5754 -367 469 322 34 25 chr4 137510770 137511006 -46777656 - MIR SINE MIR -16 246 9 383 318 96 69 chr4 137511371 137511435 -46777227 - L2 LINE L2 -213 3059 2998 2310 103 7 0 chr4 137511435 137511745 -46776917 - AluSp SINE Alu -1 312 1 383 318 96 69 chr4 137511745 137511756 -46776906 - L2 LINE L2 -274 2998 2989 2225 96 0 17 chr4 137511756 137512057 -46776605 - AluSg SINE Alu -14 296 1 383 318 96 69 chr4 137512057 137512399 -46776263 - L2 LINE L2 -283 2989 2628 2812 178 81 44 chr4 137512506 137513207 -46775455 + LTR8A LTR ERV1 1 727 0 1762 173 3 3 chr4 137513452 137513766 -46774896 - AluJo SINE Alu 0 314 1 561 157 20 29 chr4 137514107 137514209 -46774453 + MER41C LTR ERV1 3 103 -451 1452 251 59 40 chr4 137514209 137514898 -46773764 + MER61E LTR ERV1 1 779 0 2498 135 30 70 chr4 137514917 137515055 -46773607 + MER41C LTR ERV1 100 242 -312 2255 109 0 3 chr4 137515055 137515367 -46773295 + AluY SINE Alu 1 311 0 2498 135 30 70 chr4 137515367 137515701 -46772961 + MER41C LTR ERV1 242 553 -1 11492 121 45 26 chr4 137515702 137519768 -46768894 + MER41C-int LTR ERV1 1 5946 0 3334 137 36 0 chr4 137519769 137520303 -46768359 + MER41C LTR ERV1 2 554 0 21 0 0 0 chr4 137520493 137520514 -46768148 + AT_rich Low_complexity Low_complexity 1 21 0 304 273 84 35 chr4 137521575 137521718 -46766944 - L2 LINE L2 -9 3304 3155 282 325 42 75 chr4 137521948 137522105 -46766557 - L2 LINE L2 -443 2871 2727 1790 137 33 29 chr4 137522105 137522411 -46766251 - AluSx SINE Alu 0 312 6 282 325 42 75 chr4 137522411 137522561 -46766101 - L2 LINE L2 -587 2727 2574 798 257 56 19 chr4 137522784 137522998 -46765664 + MER58A DNA MER1_type 3 224 0 22 35 0 0 chr4 137523646 137523675 -46764987 + AT_rich Low_complexity Low_complexity 1 29 0 321 205 149 6 chr4 137524052 137524213 -46764449 + L1ME4a LINE L1 5933 6116 -5 1591 225 34 8 chr4 137524476 137524862 -46763800 - MSTD LTR MaLR 0 396 1 318 345 139 0 chr4 137525177 137525400 -46763262 - MIR SINE MIR 0 262 9 558 285 184 0 chr4 137528173 137528380 -46760282 - MIR SINE MIR -2 260 16 2086 132 7 0 chr4 137528445 137528748 -46759914 + AluSx SINE Alu 1 305 -7 1865 205 97 18 chr4 137529077 137529531 -46759131 + LTR2B LTR ERV1 1 490 0 1560 107 5 0 chr4 137529531 137529755 -46758907 + Harlequin LTR ERV1 1 225 -6671 2007 126 14 10 chr4 137729776 137730070 -46558592 + AluSx SINE Alu 1 295 -17 312 277 142 45 chr4 137730276 137730431 -46558231 + MIR3 SINE MIR 32 201 -7 373 281 119 11 chr4 137730438 137730623 -46558039 + MARNA DNA Mariner 134 338 -248 289 295 53 0 chr4 137730673 137730768 -46557894 + MARNA DNA Mariner 411 510 -76 319 208 0 0 chr4 137730989 137731061 -46557601 - MER5B DNA MER1_type 0 178 107 1341 141 5 0 chr4 137731165 137731357 -46557305 + AluSq SINE Alu 94 286 -27 2305 83 3 0 chr4 137731368 137731701 -46556961 + AluSg1 SINE Alu 1 309 0 21 36 0 0 chr4 137731922 137731950 -46556712 + AT_rich Low_complexity Low_complexity 1 28 0 426 259 125 68 chr4 137731966 137732287 -46556375 - L1ME4a LINE L1 -94 6027 5689 235 69 0 0 chr4 137732426 137732455 -46556207 + Alu SINE Alu 147 175 -127 2294 99 7 0 chr4 137732699 137733003 -46555659 - AluSq SINE Alu -7 306 1 196 179 134 45 chr4 137733401 137733468 -46555194 - MER5B DNA MER1_type -47 131 59 1982 130 4 0 chr4 137733709 137733978 -46554684 + AluSx SINE Alu 30 299 -13 441 295 66 18 chr4 137734002 137734229 -46554433 + L1M4 LINE L1 4075 4312 -1834 24 0 0 0 chr4 137734515 137734539 -46554123 + AT_rich Low_complexity Low_complexity 1 24 0 302 186 139 39 chr4 137734733 137734862 -46553800 - MLT1H LTR MaLR -26 523 382 302 266 31 0 chr4 137734847 137734911 -46553751 - MLT1H LTR MaLR -185 364 299 2357 80 10 3 chr4 137734961 137735261 -46553401 + AluSp SINE Alu 2 303 -10 261 96 0 115 chr4 137735559 137735611 -46553051 + AluJo SINE Alu 92 137 -165 2159 141 0 0 chr4 137735702 137736006 -46552656 - AluSg SINE Alu -6 304 1 2329 116 15 0 chr4 137736038 137736365 -46552297 - MER1B DNA MER1_type -2 337 6 520 208 0 21 chr4 137736643 137736787 -46551875 + CT-rich Low_complexity Low_complexity 4 144 0 1976 123 4 0 chr4 137737112 137737440 -46551222 + AluSx SINE Alu 6 334 0 2249 87 0 0 chr4 137737722 137737999 -46550663 + AluSp SINE Alu 1 277 -36 1800 96 9 0 chr4 137737999 137738229 -46550433 + AluSc SINE Alu 67 298 -11 2154 135 3 3 chr4 137738754 137739066 -46549596 + AluSx SINE Alu 1 312 0 2217 131 3 0 chr4 137739078 137739383 -46549279 + AluSq SINE Alu 1 306 -7 302 221 6 146 chr4 137739607 137739703 -46548959 - L1M4 LINE L1 -2721 3425 3317 1970 72 6 127 chr4 137739703 137740049 -46548613 - AluY SINE Alu -7 304 1 1067 0 8 0 chr4 137740050 137740173 -46548489 + (TTATG)n Simple_repeat Simple_repeat 1 124 0 2168 98 7 0 chr4 137740174 137740460 -46548202 - AluSq SINE Alu -25 288 1 302 221 6 146 chr4 137740460 137740517 -46548145 - L1M4 LINE L1 -2828 3318 3290 338 207 0 81 chr4 137740519 137740630 -46548032 + L1MC4 LINE L1 6607 6708 -1334 390 205 149 61 chr4 137740634 137740760 -46547902 - L1M4 LINE L1 -2859 3287 3173 1553 193 21 3 chr4 137740760 137741045 -46547617 + AluJb SINE Alu 1 290 -22 390 205 149 61 chr4 137741045 137741294 -46547368 - L1M4 LINE L1 -2973 3173 2879 2236 83 11 0 chr4 137741310 137741621 -46547041 + AluY SINE Alu 1 314 0 1621 169 23 0 chr4 137741674 137741934 -46546728 + AluSx SINE Alu 29 294 -18 389 299 85 51 chr4 137741934 137742309 -46546353 + L1ME LINE L1 5201 5600 -570 1164 234 37 24 chr4 137742309 137742604 -46546058 + AluJo SINE Alu 2 300 -2 389 299 85 51 chr4 137742604 137742870 -46545792 + L1ME LINE L1 5600 5856 -314 336 135 0 0 chr4 137743101 137743153 -46545509 - AluSx SINE Alu -10 291 240 2191 84 0 0 chr4 137743158 137743421 -46545241 - AluSx SINE Alu -49 263 1 2385 102 0 0 chr4 137743424 137743727 -46544935 - AluSx SINE Alu -7 305 3 23 0 0 0 chr4 137743775 137743798 -46544864 + AT_rich Low_complexity Low_complexity 1 23 0 1670 170 0 48 chr4 137743865 137744176 -46544486 - AluJo SINE Alu -16 296 1 1418 145 0 31 chr4 137744216 137744443 -46544219 - AluSx SINE Alu -92 220 1 225 344 89 39 chr4 137745165 137745345 -46543317 - MER5A DNA MER1_type 0 189 1 2181 96 0 14 chr4 137745520 137745800 -46542862 + AluSx SINE Alu 1 276 -36 2429 43 0 3 chr4 137745810 137746126 -46542536 + AluY SINE Alu 1 315 0 401 201 1 20 chr4 137746246 137746342 -46542320 + AluJ/FLAM SINE Alu 1 62 -240 691 111 22 37 chr4 137746494 137746629 -46542033 + L1MB3 LINE L1 6044 6176 -7 2015 106 7 4 chr4 137747058 137747332 -46541330 - AluSp SINE Alu -12 301 27 281 296 0 0 chr4 137747949 137748037 -46540625 + L2 LINE L2 2698 2785 -529 512 227 36 82 chr4 137748176 137748396 -46540266 + L2 LINE L2 3098 3307 -6 2127 132 0 0 chr4 137749292 137749305 -46539357 - AluSx SINE Alu -16 296 284 291 54 0 0 chr4 137749305 137749342 -46539320 + (TA)n Simple_repeat Simple_repeat 1 37 0 2127 132 0 0 chr4 137749342 137749624 -46539038 - AluSx SINE Alu -27 285 1 549 171 8 26 chr4 137749626 137749743 -46538919 + L1ME1 LINE L1 6020 6134 -32 2325 103 0 3 chr4 137749813 137750124 -46538538 + AluY SINE Alu 1 310 -1 292 310 112 9 chr4 137750616 137750732 -46537930 - MIR SINE MIR -64 144 17 343 245 175 7 chr4 137750799 137750942 -46537720 + MIR SINE MIR 1 167 -95 672 136 0 27 chr4 137750945 137751055 -46537607 + FRAM SINE Alu 1 99 -77 962 159 40 53 chr4 137751341 137751417 -46537245 - AluJo SINE Alu -2 310 235 3305 145 25 22 chr4 137751417 137751747 -46536915 - MER41C LTR ERV1 0 554 220 2258 88 10 10 chr4 137751747 137752055 -46536607 + AluSg SINE Alu 1 308 -2 3305 145 25 22 chr4 137752055 137752276 -46536386 - MER41C LTR ERV1 -334 220 1 962 159 40 53 chr4 137752276 137752426 -46536236 - AluJo SINE Alu -77 235 87 184 316 19 92 chr4 137753041 137753247 -46535415 - L2 LINE L2 -108 3205 3015 2110 122 3 3 chr4 137753529 137753832 -46534830 - AluSx SINE Alu -9 303 1 2150 127 10 0 chr4 137753836 137754143 -46534519 - AluSq SINE Alu -3 310 1 2177 94 0 0 chr4 137754685 137754962 -46533700 + AluSx SINE Alu 27 303 -9 1389 154 38 68 chr4 137755147 137755317 -46533345 + L1MB8 LINE L1 5512 5686 -498 2021 146 0 0 chr4 137755317 137755612 -46533050 + AluSx SINE Alu 1 295 -17 1389 154 38 68 chr4 137755612 137755710 -46532952 + L1MB8 LINE L1 5686 5773 -411 2445 90 0 0 chr4 137755710 137756021 -46532641 + AluY SINE Alu 1 311 0 1389 154 38 68 chr4 137756021 137756044 -46532618 + L1MB8 LINE L1 5773 5795 -389 747 143 0 0 chr4 137756047 137756166 -46532496 + AluSc SINE Alu 181 299 -10 808 209 118 9 chr4 137756166 137756377 -46532285 + L1MB8 LINE L1 5942 6175 -3 490 103 15 0 chr4 137756481 137756549 -46532113 - AluJ/FRAM SINE Alu -23 289 221 1728 199 118 111 chr4 137756636 137756863 -46531799 + LTR8A LTR ERV1 1 225 -502 2107 123 0 3 chr4 137756863 137757155 -46531507 - AluSx SINE Alu -5 307 17 1728 199 118 111 chr4 137757155 137757649 -46531013 + LTR8A LTR ERV1 225 727 0 2188 118 7 0 chr4 137757812 137758109 -46530553 + AluSp SINE Alu 1 299 -14 1553 161 109 0 chr4 137758118 137758385 -46530277 + AluSx SINE Alu 1 296 -16 2895 98 51 24 chr4 137758474 137758756 -46529906 - MER4C LTR ERV1 0 465 165 2289 110 3 0 chr4 137758756 137759064 -46529598 + AluSx SINE Alu 1 309 -3 2895 98 51 24 chr4 137759064 137759231 -46529431 - MER4C LTR ERV1 -300 165 4 254 93 0 23 chr4 137759481 137759524 -46529138 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 1910 103 0 0 chr4 137759640 137759882 -46528780 - AluSg SINE Alu -68 242 1 28 48 0 0 chr4 137759925 137759967 -46528695 + AT_rich Low_complexity Low_complexity 1 42 0 396 78 52 0 chr4 137759972 137760049 -46528613 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 749 181 6 96 chr4 137760057 137760223 -46528439 - FRAM SINE Alu -25 151 1 2242 106 0 20 chr4 137760307 137760610 -46528052 + AluSg SINE Alu 2 298 -12 27 0 0 0 chr4 137760770 137760797 -46527865 + AT_rich Low_complexity Low_complexity 1 27 0 1359 189 11 0 chr4 137761372 137761637 -46527025 - L1MD1 LINE L1 0 6242 5975 322 224 9 47 chr4 137761638 137761735 -46526927 - MER34C LTR ERV1 0 585 491 1562 194 26 19 chr4 137761735 137762045 -46526617 + AluJb SINE Alu 1 312 0 2349 107 0 3 chr4 137762057 137762366 -46526296 + AluSq SINE Alu 5 312 -1 2029 131 3 7 chr4 137762446 137762752 -46525910 + AluSq SINE Alu 1 305 -8 1109 153 5 35 chr4 137762880 137763082 -46525580 - AluJo SINE Alu -32 280 85 323 214 94 34 chr4 137763204 137763321 -46525341 - MER34B LTR ERV1 -441 124 1 3120 179 51 35 chr4 137763321 137763962 -46524700 - L1MD1 LINE L1 -267 5975 5305 1680 156 48 17 chr4 137763962 137764257 -46524405 - AluJo SINE Alu -8 304 1 3120 179 51 35 chr4 137764257 137764594 -46524068 - L1MD1 LINE L1 -937 5305 4975 2267 97 3 3 chr4 137764643 137764941 -46523721 + AluSp SINE Alu 16 313 0 1196 173 0 61 chr4 137764949 137765180 -46523482 + AluJo SINE Alu 87 303 -9 451 202 10 20 chr4 137765202 137765301 -46523361 - L1MD1 LINE L1 -1198 4948 4851 705 143 0 0 chr4 137765301 137765406 -46523256 + FLAM_C SINE Alu 13 117 -26 1808 168 11 3 chr4 137765773 137766059 -46522603 + AluJo SINE Alu 1 288 -24 2276 68 7 4 chr4 137766080 137766361 -46522301 + AluSq SINE Alu 1 282 -31 228 67 0 0 chr4 137766365 137766395 -46522267 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 954 150 92 0 chr4 137766806 137766979 -46521683 + MER41B LTR ERV1 1 189 -446 749 114 8 68 chr4 137766998 137767130 -46521532 + AluSg SINE Alu 52 175 -135 1561 105 4 38 chr4 137767130 137767369 -46521293 + AluSg/x SINE Alu 67 297 -15 2779 158 11 18 chr4 137767369 137767655 -46521007 + MER41B LTR ERV1 184 467 -168 2113 106 22 26 chr4 137767655 137767966 -46520696 + AluSx SINE Alu 1 310 -2 2779 158 11 18 chr4 137767966 137768134 -46520528 + MER41B LTR ERV1 467 635 0 232 296 0 0 chr4 137768274 137768328 -46520334 + L2 LINE L2 3215 3268 -4 22 0 0 0 chr4 137768374 137768396 -46520266 + AT_rich Low_complexity Low_complexity 1 22 0 2074 105 0 11 chr4 137768402 137768716 -46519946 + AluSx SINE Alu 1 311 0 1416 150 276 3 chr4 137768877 137769210 -46519452 + LTR29 LTR ERV1 1 424 -198 990 131 46 17 chr4 137769204 137769379 -46519283 + LTR49 LTR ERV1 416 595 0 * 373 164 0 0 chr4 137769486 137769541 -46519121 - MER66A LTR ERV1 -137 341 287 296 294 76 11 chr4 137771949 137772041 -46516621 - FLAM_A SINE Alu -35 98 1 201 217 65 0 chr4 137772486 137772532 -46516130 - MIR3 SINE MIR -41 167 119 1847 158 7 10 chr4 137773092 137773395 -46515267 - AluSx SINE Alu -10 302 1 220 274 0 0 chr4 137773404 137773455 -46515207 + MER5A DNA MER1_type 55 105 -84 248 267 58 33 chr4 137774586 137774706 -46513956 + MER5A DNA MER1_type 39 161 -28 1967 125 7 23 chr4 137774825 137775130 -46513532 + AluSx SINE Alu 1 300 -12 2122 93 24 7 chr4 137775540 137775829 -46512833 - AluSx SINE Alu -18 294 1 1688 160 33 16 chr4 137776084 137776391 -46512271 - AluJo SINE Alu 0 312 1 1745 161 0 38 chr4 137776626 137776943 -46511719 - AluSx SINE Alu -7 305 1 2139 96 27 10 chr4 137777568 137777860 -46510802 + AluSg SINE Alu 1 297 -13 2222 109 7 0 chr4 137778139 137778441 -46510221 - AluSx SINE Alu -8 304 1 664 226 0 8 chr4 137778443 137778567 -46510095 - FLAM_A SINE Alu -10 123 1 2132 126 3 7 chr4 137778591 137778892 -46509770 - AluSq SINE Alu -13 300 1 1165 123 6 6 chr4 137778892 137779063 -46509599 - AluJb SINE Alu -8 304 134 1498 200 65 15 chr4 137779087 137779229 -46509433 - MER58B DNA MER1_type -2079 341 207 2442 55 3 0 chr4 137779229 137779519 -46509143 - AluY SINE Alu -20 291 1 1498 200 65 15 chr4 137779519 137779701 -46508961 - MER58B DNA MER1_type -2213 207 1 2273 83 11 0 chr4 137780557 137780860 -46507802 - AluSx SINE Alu 0 306 1 571 274 137 9 chr4 137780917 137781129 -46507533 - MIR SINE MIR -3 259 21 493 130 0 70 chr4 137781327 137781427 -46507235 - FLAM_A SINE Alu -1 141 49 1955 93 61 7 chr4 137781620 137781900 -46506762 - AluSx SINE Alu -17 295 1 183 258 172 47 chr4 137781940 137782068 -46506594 + MIR SINE MIR 112 255 -7 258 348 32 51 chr4 137782138 137782296 -46506366 - L2 LINE L2 -44 3228 3074 23 0 0 0 chr4 137782352 137782375 -46506287 + AT_rich Low_complexity Low_complexity 1 23 0 2368 87 0 0 chr4 137782872 137783170 -46505492 - AluY SINE Alu -13 298 1 2242 92 0 0 chr4 137783432 137783734 -46504928 - AluSq SINE Alu 0 302 1 497 235 15 53 chr4 137784095 137784227 -46504435 + FLAM_C SINE Alu 1 127 -6 1083 130 0 0 chr4 137784634 137784795 -46503867 + AluSg/x SINE Alu 130 290 -20 2131 129 3 3 chr4 137784803 137785098 -46503564 + AluSx SINE Alu 1 295 -17 1585 151 27 50 chr4 137785113 137785411 -46503251 + AluJo SINE Alu 5 295 -17 1033 187 174 33 chr4 137785481 137785722 -46502940 - AluJb SINE Alu -15 297 23 1200 169 91 40 chr4 137785793 137786089 -46502573 - MSTD LTR MaLR -82 314 4 1714 144 41 4 chr4 137786311 137786581 -46502081 - AluJb SINE Alu -32 280 1 1372 254 93 46 chr4 137786756 137786850 -46501812 + L2 LINE L2 2354 2442 -871 1596 154 20 65 chr4 137786850 137787156 -46501506 - AluJo SINE Alu -20 292 1 1372 254 93 46 chr4 137787156 137787957 -46500705 + L2 LINE L2 2442 3289 -24 741 202 0 0 chr4 137787985 137788114 -46500548 - FLAM_A SINE Alu -4 129 1 929 121 0 0 chr4 137789158 137789290 -46499372 - FLAM_C SINE Alu -1 132 1 211 272 27 116 chr4 137789403 137789466 -46499196 - MIR3 SINE MIR -35 173 106 905 139 17 81 chr4 137789466 137789639 -46499023 + FRAM SINE Alu 5 166 0 1911 119 18 4 chr4 137789639 137789945 -46498717 + AluSx SINE Alu 1 310 0 211 272 27 116 chr4 137789945 137790026 -46498636 - MIR3 SINE MIR -100 108 40 277 231 75 22 chr4 137790641 137790775 -46497887 - MER58C DNA MER1_type -8 207 67 838 136 15 15 chr4 137790776 137790908 -46497754 + FLAM_C SINE Alu 2 133 0 296 276 86 0 chr4 137790989 137791105 -46497557 - HAL1b LINE L1 -826 522 397 21 0 0 0 chr4 137791307 137791328 -46497334 + AT_rich Low_complexity Low_complexity 1 21 0 1973 107 7 0 chr4 137791454 137791754 -46496908 - AluSq SINE Alu 0 302 1 2237 60 26 30 chr4 137791764 137792066 -46496596 - AluY SINE Alu -10 301 1 887 247 98 11 chr4 137792253 137792540 -46496122 - MER119 DNA MER1_type -269 314 3 304 136 0 0 chr4 137792542 137792586 -46496076 - MER5A DNA MER1_type -136 53 10 2074 124 20 3 chr4 137793798 137794097 -46494565 - AluSx SINE Alu -8 304 1 2385 85 7 0 chr4 137794363 137794669 -46493993 + AluSp SINE Alu 2 309 -4 2166 85 4 0 chr4 137795362 137795633 -46493029 + AluSp SINE Alu 1 272 -41 538 99 0 0 chr4 137795633 137795704 -46492958 + AluSg/x SINE Alu 215 285 -24 258 32 0 0 chr4 137795704 137795735 -46492927 + (TA)n Simple_repeat Simple_repeat 1 31 0 1952 68 0 0 chr4 137797241 137797477 -46491185 - AluY SINE Alu -12 299 64 755 130 0 41 chr4 137797737 137797860 -46490802 + FLAM_C SINE Alu 1 118 -15 21 71 0 0 chr4 137798035 137798077 -46490585 + AT_rich Low_complexity Low_complexity 1 42 0 960 102 0 0 chr4 137798293 137798420 -46490242 - AluY SINE Alu -10 301 175 2255 114 0 0 chr4 137798801 137799091 -46489571 + AluSq SINE Alu 1 290 -23 1817 150 10 10 chr4 137800002 137800296 -46488366 - AluJb SINE Alu -14 298 5 352 271 8 34 chr4 137800655 137800773 -46487889 - MIR SINE MIR -136 126 12 1313 100 0 0 chr4 137800960 137801130 -46487532 - AluSg/x SINE Alu -6 304 135 24 0 0 0 chr4 137801789 137801813 -46486849 + AT_rich Low_complexity Low_complexity 1 24 0 2367 52 0 23 chr4 137802502 137802812 -46485850 - AluY SINE Alu -8 303 1 1031 64 0 0 chr4 137802812 137802937 -46485725 - AluSp/q SINE Alu -7 306 182 2145 111 3 10 chr4 137803041 137803338 -46485324 - AluY SINE Alu -16 295 1 216 338 135 22 chr4 137804347 137804569 -46484093 - L2 LINE L2 -337 2977 2731 560 144 31 0 chr4 137804897 137804994 -46483668 + U6 snRNA snRNA 1 100 -7 445 186 20 29 chr4 137805096 137805198 -46483464 - MIR SINE MIR 0 262 162 1999 119 10 17 chr4 137805951 137806244 -46482418 - AluSx SINE Alu -21 291 1 22 35 0 0 chr4 137807694 137807723 -46480939 + AT_rich Low_complexity Low_complexity 1 29 0 314 44 0 22 chr4 137807807 137807852 -46480810 + (TA)n Simple_repeat Simple_repeat 1 44 0 1655 197 7 13 chr4 137809270 137809569 -46479093 - AluJo SINE Alu -14 298 2 2244 102 14 0 chr4 137810598 137810893 -46477769 - AluSx SINE Alu -13 299 1 2266 108 0 7 chr4 137812190 137812497 -46476165 + AluSx SINE Alu 1 305 -7 180 216 27 0 chr4 137812806 137812843 -46475819 - L2 LINE L2 -93 3220 3183 2145 104 3 23 chr4 137813326 137813634 -46475028 + AluSx SINE Alu 1 302 -10 2301 88 0 0 chr4 137813897 137814215 -46474447 + AluSp SINE Alu 1 318 0 1480 187 8 0 chr4 137814536 137814787 -46473875 + AluJo SINE Alu 42 294 -18 243 0 0 0 chr4 137815308 137815335 -46473327 + (T)n Simple_repeat Simple_repeat 1 27 0 25 0 0 0 chr4 137815407 137815432 -46473230 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr4 137815453 137815485 -46473177 + AT_rich Low_complexity Low_complexity 1 32 0 743 206 0 0 chr4 137815627 137815763 -46472899 + AluJo SINE Alu 1 136 -176 25 31 0 0 chr4 137815763 137815795 -46472867 + AT_rich Low_complexity Low_complexity 1 32 0 1116 187 65 24 chr4 137815906 137816152 -46472510 + AluJo SINE Alu 1 256 -56 1603 189 6 59 chr4 137816293 137816615 -46472047 + AluJb SINE Alu 1 305 -7 298 281 82 47 chr4 137816697 137816868 -46471794 + MER5B DNA MER1_type 1 177 -1 2246 77 25 0 chr4 137817334 137817620 -46471042 - AluY SINE Alu -18 293 1 180 152 0 0 chr4 137818154 137818187 -46470475 + (CATA)n Simple_repeat Simple_repeat 2 34 0 1908 136 35 7 chr4 137818188 137818475 -46470187 - AluJb SINE Alu -17 295 1 373 176 85 127 chr4 137818912 137819077 -46469585 - MER103 DNA DNA -1 165 8 2045 125 20 7 chr4 137819155 137819450 -46469212 - AluJo SINE Alu -13 299 1 2202 124 0 0 chr4 137819605 137819896 -46468766 - AluSx SINE Alu -19 293 3 275 125 21 62 chr4 137820536 137820632 -46468030 + (TA)n Simple_repeat Simple_repeat 2 93 0 572 150 60 0 chr4 137820647 137820747 -46467915 - FLAM_A SINE Alu -21 121 16 23 0 0 0 chr4 137822974 137822997 -46465665 + AT_rich Low_complexity Low_complexity 1 23 0 2069 130 7 3 chr4 137823156 137823457 -46465205 + AluSg SINE Alu 1 302 -8 347 183 0 14 chr4 137823720 137823791 -46464871 - MER2 DNA MER2_type -1 344 275 2232 94 17 3 chr4 137823792 137824090 -46464572 + AluSc SINE Alu 1 302 -7 502 137 0 111 chr4 137824142 137824259 -46464403 - MER2 DNA MER2_type -241 104 1 286 245 153 20 chr4 137824502 137824600 -46464062 + MIR SINE MIR 4 114 -148 2319 97 7 0 chr4 137824736 137825035 -46463627 - AluSx SINE Alu -10 302 2 24 32 0 0 chr4 137825105 137825136 -46463526 + AT_rich Low_complexity Low_complexity 1 31 0 231 298 138 11 chr4 137826340 137826434 -46462228 - L2 LINE L2 -13 3300 3195 720 203 107 6 chr4 137826439 137826616 -46462046 - MER46A DNA MER2_type -1 235 41 293 137 20 0 chr4 137827897 137827948 -46460714 - MER51D LTR ERV1 -106 551 500 399 146 125 10 chr4 137827951 137828047 -46460615 - MER3 DNA MER1_type -50 159 53 1048 178 157 34 chr4 137828067 137828249 -46460413 - Charlie1b DNA MER1_type -2238 523 365 1795 166 10 14 chr4 137828249 137828538 -46460124 - AluJo SINE Alu -24 288 1 1048 178 157 34 chr4 137828538 137828791 -46459871 - Charlie1b DNA MER1_type -2396 365 32 2159 109 20 10 chr4 137828943 137829246 -46459416 + AluSx SINE Alu 6 311 -1 320 272 157 20 chr4 137830313 137830460 -46458202 - MIR3 SINE MIR -18 190 24 306 171 0 0 chr4 137833719 137833789 -46454873 + (CGG)n Simple_repeat Simple_repeat 1 70 0 286 222 0 0 chr4 137834649 137834703 -46453959 + L2 LINE L2 3259 3312 -1 571 203 34 0 chr4 137835140 137835258 -46453404 + FRAM SINE Alu 1 119 -57 313 200 71 35 chr4 137835264 137835349 -46453313 - MIR3 SINE MIR -39 169 82 22 0 0 0 chr4 137835881 137835903 -46452759 + AT_rich Low_complexity Low_complexity 1 22 0 202 302 0 0 chr4 137835929 137835992 -46452670 - L2 LINE L2 0 3313 3251 23 0 0 0 chr4 137836174 137836197 -46452465 + AT_rich Low_complexity Low_complexity 1 23 0 747 198 0 0 chr4 137836648 137836769 -46451893 - FLAM_C SINE Alu -21 122 2 2562 61 0 0 chr4 137836809 137837120 -46451542 - AluY SINE Alu 0 311 1 1629 135 0 0 chr4 137837360 137837590 -46451072 + AluSx SINE Alu 1 230 -82 816 189 122 0 chr4 137837713 137837861 -46450801 - AluJo SINE Alu -146 166 1 348 270 131 21 chr4 137838089 137838326 -46450336 - L1M4 LINE L1 -3605 2541 2279 2347 87 0 3 chr4 137838331 137838629 -46450033 - AluSg SINE Alu -13 297 1 329 218 162 21 chr4 137839184 137839326 -46449336 - L2 LINE L2 -2 3311 3150 345 335 40 50 chr4 137839707 137839907 -46448755 - L2 LINE L2 -200 3072 2875 257 259 41 44 chr4 137839936 137840129 -46448533 + MIR SINE MIR 5 254 -8 1593 192 58 0 chr4 137840238 137840530 -46448132 + 7SLRNA srpRNA srpRNA 1 309 -11 577 302 60 81 chr4 137840594 137840892 -46447770 - L2 LINE L2 -528 2786 2495 2161 65 0 55 chr4 137842102 137842410 -46446252 + AluY SINE Alu 1 291 -20 2209 98 0 3 chr4 137842419 137842714 -46445948 + AluSx SINE Alu 1 294 -18 1138 157 49 29 chr4 137842749 137842953 -46445709 - AluJb SINE Alu -18 294 87 2871 161 31 19 chr4 137843042 137843528 -46445134 + MER21B LTR ERV1 1 492 -371 854 139 40 81 chr4 137843538 137843711 -46444951 + MER21B LTR ERV1 671 836 -27 2294 116 3 0 chr4 137844089 137844399 -46444263 + AluSx SINE Alu 1 311 -1 468 273 23 8 chr4 137845141 137845269 -46443393 + L2 LINE L2 3180 3309 -4 1729 164 3 27 chr4 137845464 137845757 -46442905 + AluJo SINE Alu 1 286 -26 978 207 12 0 chr4 137845764 137845933 -46442729 + MER5A DNA MER1_type 19 189 0 26 50 0 0 chr4 137845988 137846028 -46442634 + AT_rich Low_complexity Low_complexity 1 40 0 1570 199 19 51 chr4 137846309 137846598 -46442064 + Charlie4a DNA MER1_type 87 359 -1602 2041 130 7 13 chr4 137846598 137846906 -46441756 - AluSq SINE Alu -7 306 1 1570 199 19 51 chr4 137846906 137847048 -46441614 + Charlie4a DNA MER1_type 359 504 -4 741 97 30 45 chr4 137847260 137847394 -46441268 + L1MA4 LINE L1 6169 6300 0 294 307 71 7 chr4 137847563 137847703 -46440959 - MER46C DNA MER2_type -9 329 181 415 274 83 24 chr4 137848041 137848241 -46440421 - MIR SINE MIR -13 249 38 205 286 14 29 chr4 137848348 137848418 -46440244 + MIR3 SINE MIR 15 83 -125 472 186 10 0 chr4 137849401 137849498 -46439164 - MER103 DNA DNA -58 108 11 1618 139 77 68 chr4 137849514 137849866 -46438796 + L1PA16 LINE L1 5805 6159 -7 380 323 114 6 chr4 137850400 137850558 -46438104 - L3 LINE CR1 -9 1568 1394 859 168 144 12 chr4 137851218 137851391 -46437271 - AluJo SINE Alu -18 294 99 242 324 105 0 chr4 137852237 137852342 -46436320 + L2 LINE L2 3136 3251 -21 21 0 0 0 chr4 137852559 137852580 -46436082 + AT_rich Low_complexity Low_complexity 1 21 0 282 134 90 45 chr4 137852580 137852647 -46436015 - LTR5 LTR ERVK -164 805 736 661 173 9 0 chr4 137852667 137852777 -46435885 + AluSg/x SINE Alu 190 300 -9 1701 189 0 0 chr4 137852942 137853233 -46435429 + AluJb SINE Alu 6 296 -16 323 114 0 0 chr4 137853235 137853279 -46435383 + Alu SINE Alu 1 44 -258 1027 128 27 0 chr4 137853279 137853427 -46435235 + AluSg/x SINE Alu 138 289 -21 2128 120 0 22 chr4 137853429 137853746 -46434916 + AluSx SINE Alu 1 310 -2 2189 73 22 7 chr4 137854148 137854423 -46434239 + AluSc SINE Alu 1 279 -30 486 0 0 0 chr4 137854429 137854483 -46434179 + (CA)n Simple_repeat Simple_repeat 1 54 0 282 56 0 0 chr4 137854513 137854549 -46434113 + (T)n Simple_repeat Simple_repeat 1 36 0 23 68 0 0 chr4 137855203 137855247 -46433415 + GC_rich Low_complexity Low_complexity 1 44 0 722 192 41 17 chr4 137855537 137855709 -46432953 + MER104 DNA MER2_type 2 177 -3 1790 114 64 7 chr4 137855710 137856014 -46432648 - AluSg SINE Alu 0 310 1 23 78 0 0 chr4 137856477 137856528 -46432134 + AT_rich Low_complexity Low_complexity 1 51 0 381 218 88 48 chr4 137857169 137857316 -46431346 + L1ME4a LINE L1 5968 6120 -1 1475 135 66 16 chr4 137857316 137857560 -46431102 + AluSx SINE Alu 17 272 -40 2329 86 0 16 chr4 137857560 137857862 -46430800 + AluSc SINE Alu 1 299 -10 22 70 0 0 chr4 137858111 137858154 -46430508 + AT_rich Low_complexity Low_complexity 1 43 0 180 0 0 0 chr4 137858913 137858933 -46429729 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 677 214 110 0 chr4 137859202 137859347 -46429315 + LTR33 LTR ERVL 1 161 -360 509 302 40 15 chr4 137859440 137859642 -46429020 + LTR33 LTR ERVL 309 515 -6 2185 118 16 0 chr4 137859657 137859962 -46428700 - AluSx SINE Alu -2 310 1 1428 161 7 48 chr4 137860333 137860606 -46428056 - AluJo SINE Alu -20 292 31 2679 55 0 0 chr4 137860984 137861295 -46427367 - AluY SINE Alu 0 311 1 41 0 0 0 chr4 137861389 137861430 -46427232 + AT_rich Low_complexity Low_complexity 1 41 0 2044 125 0 14 chr4 137862371 137862688 -46425974 - AluY SINE Alu 0 311 1 1905 115 10 17 chr4 137862790 137863078 -46425584 + AluSc SINE Alu 1 286 -23 789 211 0 0 chr4 137863868 137864001 -46424661 - FLAM_A SINE Alu 0 133 1 553 269 24 88 chr4 137865376 137865670 -46422992 + HAL1 LINE L1 3 277 -2230 310 313 94 8 chr4 137865689 137865817 -46422845 + HAL1 LINE L1 371 509 -1998 272 241 0 0 chr4 137865842 137865896 -46422766 + HAL1 LINE L1 792 845 -1662 2907 226 40 58 chr4 137865915 137866820 -46421842 + HAL1 LINE L1 991 1879 -628 2129 125 0 0 chr4 137867519 137867807 -46420855 + AluSx SINE Alu 14 301 -11 1776 150 16 23 chr4 137867811 137868117 -46420545 + AluJo SINE Alu 1 304 -8 421 309 118 44 chr4 137868306 137868339 -46420323 + L2 LINE L2 1862 1891 -1423 2150 137 0 0 chr4 137868339 137868645 -46420017 - AluJb SINE Alu -6 306 1 421 309 118 44 chr4 137868645 137868771 -46419891 + L2 LINE L2 1891 2006 -1308 2139 107 14 0 chr4 137868771 137869060 -46419602 - AluSp SINE Alu -20 293 1 421 309 118 44 chr4 137869060 137869355 -46419307 + L2 LINE L2 2006 2351 -963 1894 185 92 49 chr4 137869742 137870190 -46418472 + MLT1C LTR MaLR 1 467 0 1007 110 86 0 chr4 137870962 137871125 -46417537 - MER53 DNA DNA -12 177 1 232 189 75 0 chr4 137872175 137872228 -46416434 - MER3 DNA MER1_type -137 72 16 770 245 199 24 chr4 137872290 137872661 -46416001 - L1ME1 LINE L1 -182 5984 5549 270 56 0 0 chr4 137872661 137872697 -46415965 + (TA)n Simple_repeat Simple_repeat 1 36 0 27 0 0 0 chr4 137872967 137872994 -46415668 + AT_rich Low_complexity Low_complexity 1 27 0 293 119 0 0 chr4 137872998 137873040 -46415622 - AluSq SINE Alu -13 290 249 1488 85 5 5 chr4 137873040 137873229 -46415433 - AluSq SINE Alu -124 189 1 310 208 14 14 chr4 137873230 137873302 -46415360 + MIR SINE MIR 191 262 0 494 195 114 0 chr4 137873314 137873437 -46415225 + MIR SINE MIR 126 262 0 233 300 67 17 chr4 137873449 137873569 -46415093 + L2 LINE L2 3175 3300 -13 843 214 0 32 chr4 137874186 137874373 -46414289 + AluJo SINE Alu 121 301 -11 1722 149 6 44 chr4 137874770 137875091 -46413571 + AluJo SINE Alu 1 309 -3 963 242 0 5 chr4 137875373 137875559 -46413103 - MLT1F LTR MaLR -357 185 1 357 189 124 89 chr4 137876284 137876378 -46412284 - MIR SINE MIR -71 191 87 1726 104 160 0 chr4 137876378 137876647 -46412015 + AluSx SINE Alu 1 312 0 357 189 124 89 chr4 137876647 137876721 -46411941 - MIR SINE MIR -175 87 17 252 0 0 0 chr4 137876732 137876760 -46411902 + (TCC)n Simple_repeat Simple_repeat 2 29 0 1864 154 4 4 chr4 137877224 137877504 -46411158 - AluJb SINE Alu -32 280 1 26 82 0 0 chr4 137877656 137877717 -46410945 + AT_rich Low_complexity Low_complexity 1 61 0 2438 73 3 3 chr4 137877954 137878256 -46410406 - AluSc SINE Alu -7 302 1 863 153 0 22 chr4 137878800 137878937 -46409725 - AluJo SINE Alu -178 134 1 478 164 127 37 chr4 137879636 137879770 -46408892 - MER69 DNA AcHobo -2 2524 2379 1001 171 24 0 chr4 137879771 137879941 -46408721 - AluJb SINE Alu -5 307 134 210 37 0 0 chr4 137879942 137879969 -46408693 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2431 42 0 3 chr4 137879969 137880253 -46408409 - AluY SINE Alu -28 283 1 307 345 143 28 chr4 137880321 137880727 -46407935 + L2 LINE L2 2586 3043 -229 276 203 0 29 chr4 137880881 137880950 -46407712 + MER69 DNA AcHobo 2451 2517 -9 686 110 0 11 chr4 137880955 137881046 -46407616 + AluY SINE Alu 2 91 -220 2278 118 0 6 chr4 137881271 137881585 -46407077 - AluSq SINE Alu -1 312 1 2182 105 23 0 chr4 137881733 137882037 -46406625 - AluSx SINE Alu -1 311 1 1364 127 55 173 chr4 137882048 137882258 -46406404 - AluYb8 SINE Alu -2 306 73 2170 101 24 0 chr4 137882258 137882545 -46406117 - AluSc SINE Alu -15 294 1 1364 127 55 173 chr4 137882545 137882621 -46406041 - AluYb8 SINE Alu -234 74 2 407 136 0 0 chr4 137882621 137882680 -46405982 - AluS SINE Alu -258 60 2 1749 168 14 0 chr4 137882705 137882991 -46405671 - AluJb SINE Alu -22 290 1 1968 141 0 26 chr4 137883042 137883346 -46405316 + AluSx SINE Alu 1 296 -16 1820 138 3 31 chr4 137883362 137883653 -46405009 - 7SLRNA srpRNA srpRNA -30 290 8 1830 147 42 0 chr4 137883993 137884278 -46404384 + AluJb SINE Alu 3 299 -13 326 171 23 60 chr4 137884436 137884693 -46403969 + AluJo SINE Alu 1 301 -1 470 234 129 0 chr4 137884743 137884867 -46403795 + MIR SINE MIR 12 151 -111 2325 104 0 0 chr4 137885156 137885453 -46403209 - AluSx SINE Alu -15 297 1 2251 93 10 0 chr4 137885613 137885904 -46402758 + AluSq SINE Alu 1 294 -19 318 87 22 0 chr4 137886533 137886579 -46402083 - Alu SINE Alu -255 47 1 522 191 17 9 chr4 137886589 137886704 -46401958 - LTR38B LTR ERV1 -492 118 3 1241 179 25 40 chr4 137887275 137887542 -46401120 + MER33 DNA MER1_type 1 257 -2328 2187 109 0 3 chr4 137887542 137887853 -46400809 + AluSg SINE Alu 1 310 0 1241 179 25 40 chr4 137887853 137887920 -46400742 + MER33 DNA MER1_type 257 324 0 2356 99 0 6 chr4 137888381 137888694 -46399968 + AluSx SINE Alu 1 311 -1 222 192 13 51 chr4 137888958 137889036 -46399626 + CT-rich Low_complexity Low_complexity 4 78 0 2312 96 3 3 chr4 137889228 137889530 -46399132 + AluSx SINE Alu 1 302 -10 2460 117 40 35 chr4 137890178 137890301 -46398361 - MER65A LTR ERV1 0 445 324 2228 174 38 83 chr4 137890301 137890648 -46398014 - MLT2B3 LTR ERVL 0 554 242 225 0 0 0 chr4 137890648 137890673 -46397989 + (GA)n Simple_repeat Simple_repeat 1 25 0 2228 174 38 83 chr4 137890673 137890905 -46397757 - MLT2B3 LTR ERVL -312 242 1 2460 117 40 35 chr4 137890905 137891183 -46397479 - MER65A LTR ERV1 -121 324 42 219 36 0 0 chr4 137891194 137891222 -46397440 + (T)n Simple_repeat Simple_repeat 1 28 0 1763 173 3 19 chr4 137891347 137891654 -46397008 + AluJo SINE Alu 1 302 -10 2630 139 5 16 chr4 137891677 137892124 -46396538 - L1MB2 LINE L1 -2 6169 5728 1965 147 3 19 chr4 137892141 137892455 -46396207 - AluJb SINE Alu 0 312 4 2238 121 3 13 chr4 137892944 137893259 -46395403 - AluSx SINE Alu 0 312 1 198 103 0 0 chr4 137893386 137893415 -46395247 + (CA)n Simple_repeat Simple_repeat 2 30 0 2255 107 10 3 chr4 137893654 137893953 -46394709 + AluSx SINE Alu 1 301 -11 2371 98 0 7 chr4 137894112 137894419 -46394243 + AluSx SINE Alu 1 305 -7 881 165 5 120 chr4 137894449 137894543 -46394119 - MER45A DNA AcHobo -1404 177 116 2272 85 0 33 chr4 137894543 137894849 -46393813 + AluY SINE Alu 1 296 -15 881 165 5 120 chr4 137894849 137894954 -46393708 - MER45A DNA AcHobo -1465 116 1 465 149 96 0 chr4 137895508 137895602 -46393060 + L1MB3 LINE L1 6074 6176 -7 21 0 0 0 chr4 137895602 137895623 -46393039 + AT_rich Low_complexity Low_complexity 1 21 0 2343 90 10 0 chr4 137895735 137896036 -46392626 - AluSq SINE Alu -9 304 1 917 194 46 95 chr4 137896373 137896656 -46392006 - MLT1B LTR MaLR -121 269 1 374 211 0 0 chr4 137896656 137896727 -46391935 - L1MB2 LINE L1 -531 5590 5520 290 245 66 9 chr4 137897602 137897708 -46390954 - HAL1b LINE L1 0 1348 1237 330 278 88 21 chr4 137897786 137897980 -46390682 - L1ME4a LINE L1 -258 5863 5657 263 267 44 0 chr4 137898271 137898361 -46390301 - L1MC4 LINE L1 0 8042 7949 2177 99 3 22 chr4 137898390 137898704 -46389958 - AluSg SINE Alu -2 308 1 1077 83 0 8 chr4 137898707 137898840 -46389822 - AluSp SINE Alu -181 132 1 27 73 0 0 chr4 137899011 137899066 -46389596 + AT_rich Low_complexity Low_complexity 1 55 0 1484 93 75 0 chr4 137899191 137899405 -46389257 + MER30 DNA MER1_type 1 230 0 767 249 53 57 chr4 137899667 137899968 -46388694 - MLT1H LTR MaLR -221 328 29 2429 68 0 3 chr4 137900510 137900802 -46387860 - AluSq SINE Alu -22 291 1 2384 76 20 0 chr4 137900802 137901103 -46387559 - AluSx SINE Alu -5 307 1 21 0 0 0 chr4 137902121 137902142 -46386520 + GC_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 137902689 137902711 -46385951 + GC_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr4 137902915 137902951 -46385711 + GC_rich Low_complexity Low_complexity 1 36 0 288 225 42 0 chr4 137904927 137904998 -46383664 - L1MB7 LINE L1 -7 6177 6104 571 206 0 0 chr4 137905056 137905153 -46383509 + MER2 DNA MER2_type 1 97 -248 647 231 0 8 chr4 137905154 137905288 -46383374 + FLAM_A SINE Alu 1 133 -9 1371 156 40 12 chr4 137905289 137905539 -46383123 + MER2 DNA MER2_type 89 345 0 1471 174 21 17 chr4 137905539 137905826 -46382836 - L1MB8 LINE L1 -80 6098 5811 1974 75 88 34 chr4 137905836 137906130 -46382532 - AluY SINE Alu -1 310 1 784 172 0 0 chr4 137906141 137906263 -46382399 - AluJb SINE Alu -187 125 4 25 0 0 0 chr4 137906267 137906292 -46382370 + AT_rich Low_complexity Low_complexity 1 25 0 2404 77 0 3 chr4 137906295 137906592 -46382070 - AluY SINE Alu -11 300 5 714 127 127 12 chr4 137906601 137906767 -46381895 - L1MB8 LINE L1 -353 5825 5641 1244 225 21 15 chr4 137906806 137907131 -46381531 - L1ME1 LINE L1 -32 6134 5808 243 0 0 0 chr4 137907263 137907290 -46381372 + (TA)n Simple_repeat Simple_repeat 2 28 0 1451 248 35 59 chr4 137907300 137907720 -46380942 + LTR38 LTR ERV1 77 485 -71 2400 72 10 13 chr4 137907720 137908025 -46380637 - AluSp SINE Alu -9 304 1 1451 248 35 59 chr4 137908025 137908096 -46380566 + LTR38 LTR ERV1 485 556 0 2049 132 3 0 chr4 137908256 137908543 -46380119 - AluSx SINE Alu -24 288 1 579 211 61 0 chr4 137909161 137909275 -46379387 + FLAM_C SINE Alu 2 122 -21 207 0 0 0 chr4 137909286 137909309 -46379353 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 216 171 0 24 chr4 137909443 137909484 -46379178 + CT-rich Low_complexity Low_complexity 3 42 0 736 103 0 51 chr4 137910220 137910337 -46378325 - HY1 scRNA scRNA -1 111 1 492 158 0 12 chr4 137910478 137910560 -46378102 - AluJ/FRAM SINE Alu -11 301 221 2331 88 10 7 chr4 137910582 137910887 -46377775 - AluSc SINE Alu -1 308 3 2619 157 39 2 chr4 137910900 137911366 -46377296 - MER31A LTR ERV1 -2 483 1 265 256 58 12 chr4 137911367 137911453 -46377209 + MLT1K LTR MaLR 499 588 0 2850 179 24 87 chr4 137911503 137911551 -46377111 - LTR8 LTR ERV1 0 691 642 2128 124 7 0 chr4 137911551 137911841 -46376821 - AluSg SINE Alu -18 292 1 2850 179 24 87 chr4 137911841 137912529 -46376133 - LTR8 LTR ERV1 -49 642 1 867 147 8 0 chr4 137912671 137912800 -46375862 - FLAM_C SINE Alu -3 130 1 2461 84 3 0 chr4 137912828 137913127 -46375535 + AluSp SINE Alu 1 300 -13 2321 115 48 28 chr4 137913175 137913532 -46375130 - THE1B LTR MaLR 0 364 1 23 0 0 0 chr4 137913569 137913592 -46375070 + AT_rich Low_complexity Low_complexity 1 23 0 1204 197 37 109 chr4 137913651 137913732 -46374930 + MER4A LTR ERV1 1 86 -379 243 88 0 0 chr4 137913732 137913766 -46374896 + (CAA)n Simple_repeat Simple_repeat 2 35 0 1204 197 37 109 chr4 137913766 137914400 -46374262 + MER4A LTR ERV1 86 465 0 1949 171 0 0 chr4 137914413 137914706 -46373956 + AluJb SINE Alu 1 293 -19 1877 205 72 0 chr4 137914842 137915217 -46373445 - Tigger7 DNA MER2_type -2085 402 1 1277 205 44 126 chr4 137915225 137915537 -46373125 - L1ME LINE L1 -398 5768 5432 1963 118 31 3 chr4 137915537 137915824 -46372838 - AluSx SINE Alu -17 295 1 1277 205 44 126 chr4 137915824 137915960 -46372702 - L1ME LINE L1 -734 5432 5286 900 70 86 0 chr4 137915960 137916088 -46372574 + MER85 DNA T2_type 1 139 0 1535 156 0 48 chr4 137916091 137916360 -46372302 - AluJo SINE Alu -56 256 1 1277 205 44 126 chr4 137916360 137916420 -46372242 - L1ME LINE L1 -882 5284 5221 2160 112 3 3 chr4 137916420 137916707 -46371955 + AluSx SINE Alu 1 287 -25 431 35 18 0 chr4 137916707 137916764 -46371898 + (TATAA)n Simple_repeat Simple_repeat 4 61 0 1277 205 44 126 chr4 137916764 137916904 -46371758 - L1ME LINE L1 -944 5222 5201 2450 86 3 0 chr4 137916904 137917206 -46371456 + AluSg SINE Alu 1 303 -7 1277 205 44 126 chr4 137917206 137917456 -46371206 - L1ME LINE L1 -965 5201 4932 1897 151 15 32 chr4 137917461 137917589 -46371073 - MER65A LTR ERV1 0 445 316 2551 57 0 3 chr4 137917589 137917890 -46370772 - AluY SINE Alu -11 300 1 1897 151 15 32 chr4 137917890 137918099 -46370563 - MER65A LTR ERV1 -129 316 114 2036 146 0 0 chr4 137918099 137918400 -46370262 - AluSx SINE Alu -11 301 1 328 119 0 0 chr4 137918400 137918459 -46370203 - Alu SINE Alu -259 44 3 * 669 179 0 0 chr4 137918459 137918566 -46370096 - MER65B LTR ERV1 -423 108 2 907 137 0 0 chr4 137918600 137918731 -46369931 + FLAM_C SINE Alu 3 133 0 7645 205 83 69 chr4 137918736 137920581 -46368081 - MER65B-int LTR ERV1 -16 5094 3277 2500 70 0 0 chr4 137920581 137920879 -46367783 - AluY SINE Alu -13 298 1 7645 205 83 69 chr4 137920879 137921062 -46367600 - MER65B-int LTR ERV1 -1833 3277 3098 1297 141 32 149 chr4 137921062 137921410 -46367252 - AluYb8 SINE Alu -1 307 1 7645 205 83 69 chr4 137921410 137921785 -46366877 - MER65B-int LTR ERV1 -2012 3098 2634 2047 127 7 3 chr4 137921785 137922084 -46366578 - AluSx SINE Alu -12 300 1 7645 205 83 69 chr4 137922084 137922228 -46366434 - MER65B-int LTR ERV1 -2476 2634 2494 1424 90 0 0 chr4 137922329 137922507 -46366155 - AluY SINE Alu -133 178 1 599 234 34 29 chr4 137922507 137922682 -46365980 - L1ME LINE L1 -611 5551 5376 2070 234 114 7 chr4 137922684 137922923 -46365739 - L1ME LINE L1 -1337 4809 4597 659 211 8 0 chr4 137922923 137923051 -46365611 - FLAM_A SINE Alu -1 132 4 2070 234 114 7 chr4 137923051 137923641 -46365021 - L1ME LINE L1 -1549 4597 3741 1240 169 70 5 chr4 137923676 137923812 -46364850 - AluJb SINE Alu -45 267 111 726 58 25 8 chr4 137923812 137923933 -46364729 + (TTTTA)n Simple_repeat Simple_repeat 2 124 0 1240 169 70 5 chr4 137923933 137924009 -46364653 - AluJb SINE Alu -201 111 41 618 195 8 8 chr4 137924014 137924132 -46364530 - FLAM_C SINE Alu -15 118 1 24 53 0 0 chr4 137924211 137924249 -46364413 + AT_rich Low_complexity Low_complexity 1 38 0 387 0 0 0 chr4 137924524 137924567 -46364095 + (TG)n Simple_repeat Simple_repeat 2 44 0 396 308 50 6 chr4 137924681 137924863 -46363799 + L2 LINE L2 2945 3134 -179 215 282 0 14 chr4 137924873 137924944 -46363718 + L2 LINE L2 3244 3313 0 2411 61 10 3 chr4 137925951 137926248 -46362414 - AluY SINE Alu -12 299 1 2398 78 0 3 chr4 137927420 137927713 -46360949 + AluSc SINE Alu 2 293 -16 27 0 0 0 chr4 137928804 137928831 -46359831 + AT_rich Low_complexity Low_complexity 1 27 0 1189 203 0 50 chr4 137929223 137929484 -46359178 - AluJo SINE Alu -23 289 42 395 273 103 58 chr4 137929643 137929755 -46358907 + L2 LINE L2 1594 1699 -1615 1961 142 3 3 chr4 137929755 137930058 -46358604 + AluJb SINE Alu 1 303 -9 395 273 103 58 chr4 137930058 137930344 -46358318 + L2 LINE L2 1699 2010 -1304 1590 259 136 47 chr4 137930391 137930986 -46357676 - MER115 DNA AcHobo 0 693 46 962 263 122 32 chr4 137931255 137931886 -46356776 - L2 LINE L2 0 3313 2608 346 97 97 14 chr4 137931886 137931958 -46356704 + MADE1 DNA Mariner 2 79 -1 962 263 122 32 chr4 137931958 137932025 -46356637 - L2 LINE L2 -705 2608 2548 723 152 174 0 chr4 137932026 137932164 -46356498 + AluJb SINE Alu 135 296 -16 239 303 9 64 chr4 137932164 137932273 -46356389 - L2 LINE L2 -761 2553 2451 3539 159 65 29 chr4 137932276 137932784 -46355878 + L1M4c LINE L1 20 559 -5825 2078 122 16 7 chr4 137932784 137933088 -46355574 + AluSx SINE Alu 1 307 -5 3539 159 65 29 chr4 137933088 137933246 -46355416 + L1M4c LINE L1 559 710 -5674 3268 266 63 35 chr4 137933259 137934804 -46353858 + L1P5 LINE L1 3 1591 -5272 * 8253 181 17 11 chr4 137934793 137936761 -46351901 + L1P5 LINE L1 4327 6302 -568 2071 118 0 14 chr4 137936761 137937057 -46351605 - AluSg SINE Alu -18 292 1 2518 81 3 0 chr4 137937062 137937369 -46351293 - AluSp SINE Alu -5 308 1 382 225 0 0 chr4 137937398 137937478 -46351184 - L1MB8 LINE L1 -205 5973 5894 1243 151 0 112 chr4 137937501 137937760 -46350902 - AluJb SINE Alu -82 230 1 1678 199 39 39 chr4 137937763 137938170 -46350492 - L1MB8 LINE L1 -272 5906 5500 280 149 0 0 chr4 137938170 137938217 -46350445 + MLT1F LTR MaLR 496 542 0 857 266 123 54 chr4 137938319 137938615 -46350047 + L1M4 LINE L1 4060 4334 -1812 2175 124 0 13 chr4 137938615 137938921 -46349741 + AluSg SINE Alu 3 304 -6 857 266 123 54 chr4 137938921 137939195 -46349467 + L1M4 LINE L1 4334 4588 -1558 1687 152 43 43 chr4 137939195 137939339 -46349323 + AluJb SINE Alu 1 144 -168 2087 96 0 83 chr4 137939339 137939663 -46348999 + AluSq SINE Alu 1 297 -16 1687 152 43 43 chr4 137939663 137939820 -46348842 + AluJb SINE Alu 143 302 -10 857 266 123 54 chr4 137939820 137940022 -46348640 + L1M4 LINE L1 4588 4775 -1371 2175 78 7 14 chr4 137940022 137940383 -46348279 + AluY SINE Alu 1 359 0 857 266 123 54 chr4 137940383 137940703 -46347959 + L1M4 LINE L1 4775 5231 -915 730 237 160 5 chr4 137941283 137941502 -46347160 + L1ME1 LINE L1 5909 6161 -5 1792 167 14 0 chr4 137941618 137941899 -46346763 - AluJb SINE Alu -17 295 11 21 0 0 0 chr4 137942004 137942025 -46346637 + AT_rich Low_complexity Low_complexity 1 21 0 28 48 0 0 chr4 137942102 137942144 -46346518 + AT_rich Low_complexity Low_complexity 1 42 0 560 125 0 21 chr4 137942171 137942267 -46346395 - AluSg/x SINE Alu -9 300 207 1628 148 15 97 chr4 137942415 137942431 -46346231 + MER4A LTR ERV1 3 19 -446 1934 156 0 13 chr4 137942431 137942759 -46345903 + AluJb SINE Alu 1 312 0 1628 148 15 97 chr4 137942759 137943416 -46345246 + MER4A LTR ERV1 19 465 0 200 381 12 0 chr4 137943507 137943591 -46345071 + MIR SINE MIR 59 143 -119 2412 123 151 104 chr4 137943730 137944364 -46344298 + MER4A LTR ERV1 1 664 0 1644 216 0 0 chr4 137944425 137944722 -46343940 + 7SLRNA srpRNA srpRNA 2 298 -22 682 191 8 8 chr4 137944742 137944868 -46343794 + FLAM_C SINE Alu 2 127 -16 1149 70 0 0 chr4 137945472 137945615 -46343047 - AluY SINE Alu -30 281 139 919 158 7 14 chr4 137945825 137945971 -46342691 + AluJo SINE Alu 1 145 -167 1696 134 0 76 chr4 137945972 137946309 -46342353 + AluY SINE Alu 1 311 0 233 329 0 0 chr4 137946329 137946399 -46342263 - L1MEd LINE L1 -6048 71 2 1047 226 56 41 chr4 137946469 137946788 -46341874 + MLT1A2 LTR MaLR 1 324 -50 2318 117 0 0 chr4 137946818 137947127 -46341535 - AluSx SINE Alu -3 309 1 2217 98 13 10 chr4 137947212 137947517 -46341145 - AluSc SINE Alu -3 306 1 21 0 0 0 chr4 137947517 137947538 -46341124 + AT_rich Low_complexity Low_complexity 1 21 0 2280 108 0 10 chr4 137947568 137947875 -46340787 - AluSg SINE Alu -6 304 1 194 282 36 45 chr4 137948014 137948124 -46340538 - L2 LINE L2 -351 2963 2855 1791 133 53 14 chr4 137948200 137948485 -46340177 - AluSq SINE Alu -17 296 1 408 186 72 31 chr4 137948517 137948614 -46340048 + AluJb SINE Alu 6 106 -206 * 772 212 0 0 chr4 137948612 137948763 -46339899 + AluSg/x SINE Alu 162 312 0 717 12 0 0 chr4 137948766 137948848 -46339814 + (GGAA)n Simple_repeat Simple_repeat 4 85 0 317 257 74 31 chr4 137948901 137949150 -46339512 + LTR16B LTR ERVL 167 454 -10 841 216 48 24 chr4 137949204 137949412 -46339250 + MLT1A1 LTR MaLR 1 213 -152 631 152 0 0 chr4 137949421 137949513 -46339149 + AluJb SINE Alu 13 104 -208 462 156 33 44 chr4 137949506 137949596 -46339066 - AluY SINE Alu -221 90 2 * 870 175 123 0 chr4 137949623 137949777 -46338885 + AluJb SINE Alu 129 301 -11 2237 112 6 10 chr4 137949777 137950089 -46338573 + AluSx SINE Alu 1 311 -1 2171 117 0 0 chr4 137950265 137950605 -46338057 + AluSx SINE Alu 1 340 0 2289 243 32 40 chr4 137951716 137951991 -46336671 + Zaphod DNA AcHobo 1 277 -3754 2381 89 7 0 chr4 137951991 137952293 -46336369 + AluSc SINE Alu 1 304 -5 2289 243 32 40 chr4 137952293 137952642 -46336020 + Zaphod DNA AcHobo 277 620 -3411 2512 232 7 15 chr4 137952642 137953180 -46335482 - MLT1F LTR MaLR 0 542 9 1877 140 46 107 chr4 137953180 137953745 -46334917 - MLT2A2 LTR ERVL 0 554 4 975 191 0 18 chr4 137953804 137953972 -46334690 - FAM SINE Alu -10 165 1 896 178 12 6 chr4 137954016 137954179 -46334483 + AluJo SINE Alu 124 287 -25 471 95 0 0 chr4 137954278 137954341 -46334321 - AluJ/FLAM SINE Alu -234 78 16 1050 194 80 70 chr4 137954478 137954528 -46334134 + Zaphod DNA AcHobo 3601 3649 -382 1782 168 0 26 chr4 137954528 137954664 -46333998 + AluJo SINE Alu 1 139 -173 2430 82 0 3 chr4 137954664 137954957 -46333705 + AluSg SINE Alu 1 292 -18 1782 168 0 26 chr4 137954957 137955129 -46333533 + AluJo SINE Alu 139 301 -11 1050 194 80 70 chr4 137955129 137955296 -46333366 + Zaphod DNA AcHobo 3649 3813 -218 2066 83 83 0 chr4 137955296 137955572 -46333090 + AluSq SINE Alu 1 299 -14 1050 194 80 70 chr4 137955572 137955739 -46332923 + Zaphod DNA AcHobo 3813 3990 -41 2374 77 7 13 chr4 137955741 137956040 -46332622 - AluSg SINE Alu -12 298 2 1707 183 10 7 chr4 137956881 137957181 -46331481 - AluJo SINE Alu -11 301 1 22 35 0 0 chr4 137957220 137957249 -46331413 + AT_rich Low_complexity Low_complexity 1 29 0 336 93 128 70 chr4 137957406 137957492 -46331170 - MER31-int LTR ERV1 -421 4459 3730 250 157 20 20 chr4 137957575 137957626 -46331036 - MER31-int LTR ERV1 -2874 3724 3674 437 207 83 30 chr4 137957682 137957783 -46330879 - MER31-int LTR ERV1 -3117 3481 3366 2008 141 0 3 chr4 137957783 137958080 -46330582 - AluSx SINE Alu -16 296 1 437 207 83 30 chr4 137958080 137958147 -46330515 - MER31-int LTR ERV1 -3232 3366 3304 318 95 0 0 chr4 137958152 137958194 -46330468 + (TTCC)n Simple_repeat Simple_repeat 4 45 0 637 218 12 0 chr4 137958194 137958364 -46330298 + CT-rich Low_complexity Low_complexity 1 172 0 285 79 11 90 chr4 137958393 137958482 -46330180 + (TTTCC)n Simple_repeat Simple_repeat 2 83 0 189 147 0 0 chr4 137958486 137958520 -46330142 + (TCCC)n Simple_repeat Simple_repeat 2 35 0 937 197 66 108 chr4 137958538 137958563 -46330099 - MER31-int LTR ERV1 -504 4376 4352 1450 188 0 0 chr4 137958563 137958802 -46329860 - AluJb SINE Alu -73 239 1 937 197 66 108 chr4 137958802 137959324 -46329338 - MER31-int LTR ERV1 -528 4352 3810 1533 190 21 17 chr4 137959324 137959614 -46329048 - AluJo SINE Alu -16 296 6 937 197 66 108 chr4 137959614 137959656 -46329006 - MER31-int LTR ERV1 -1070 3810 1546 413 217 84 35 chr4 137959648 137959870 -46328792 - MER31-int LTR ERV1 -2377 2494 1726 * 1984 102 3 51 chr4 137959871 137960197 -46328465 - AluSg SINE Alu 0 312 1 602 105 0 21 chr4 137960202 137960297 -46328365 - AluSp SINE Alu 0 313 221 1253 83 0 18 chr4 137960297 137960330 -46328332 - AluSp SINE Alu -147 166 134 2113 96 39 0 chr4 137960330 137960610 -46328052 - AluY SINE Alu -20 291 1 1253 83 0 18 chr4 137960610 137960745 -46327917 - AluSp SINE Alu -179 134 1 2431 183 27 77 chr4 137960767 137961443 -46327219 - MER31-int LTR ERV1 -2495 2376 1735 2087 148 0 0 chr4 137961443 137961753 -46326909 - AluSx SINE Alu -2 310 1 211 260 39 39 chr4 137962019 137962096 -46326566 - MIR SINE MIR -91 171 95 738 120 0 0 chr4 137962096 137962196 -46326466 + MER68 LTR ERV1 1 100 -462 1476 77 11 0 chr4 137962197 137962378 -46326284 - AluY SINE Alu -128 183 1 5244 164 50 28 chr4 137962378 137963592 -46325070 + HERVH LTR ERV1 3951 5108 -1421 2449 86 37 123 chr4 137963574 137964061 -46324601 + HERVH LTR ERV1 7269 7713 0 * 2183 95 20 8 chr4 137964061 137964455 -46324207 + LTR7 LTR ERV1 1 443 -7 450 74 0 0 chr4 137964491 137964545 -46324117 - tRNA-Arg-CGC tRNA tRNA -22 54 1 1801 159 3 17 chr4 137964732 137965027 -46323635 + AluJo SINE Alu 3 293 -19 1753 183 0 67 chr4 137965106 137965462 -46323200 + MER7A DNA MER2_type 17 346 0 2000 120 22 0 chr4 137965500 137965820 -46322842 + AluSx SINE Alu 1 326 0 2459 46 7 13 chr4 137965955 137966259 -46322403 + AluY SINE Alu 1 302 -9 2299 85 7 0 chr4 137966262 137966583 -46322079 + AluSg SINE Alu 1 323 0 222 388 8 33 chr4 137966920 137967041 -46321621 - MIR SINE MIR -133 129 12 2567 69 3 0 chr4 137967041 137967347 -46321315 - AluSp SINE Alu -4 309 3 1109 210 38 41 chr4 137967792 137968106 -46320556 + L1MB8 LINE L1 5866 6178 0 2403 79 10 3 chr4 137968116 137968420 -46320242 + AluSq SINE Alu 2 307 -6 23 54 0 0 chr4 137968599 137968636 -46320026 + AT_rich Low_complexity Low_complexity 1 37 0 1252 120 38 0 chr4 137968768 137968977 -46319685 - L1MA5A LINE L1 -4 6293 6077 581 118 140 0 chr4 137968978 137969071 -46319591 - U6 snRNA snRNA -1 106 1 2031 141 20 0 chr4 137969162 137969459 -46319203 - AluJb SINE Alu -9 303 1 2468 74 0 7 chr4 137969496 137969806 -46318856 - AluSc SINE Alu -1 308 1 1775 129 61 4 chr4 137969868 137970148 -46318514 - AluSx SINE Alu -12 300 5 2160 144 0 3 chr4 137970278 137970591 -46318071 - AluJb SINE Alu 0 312 1 2537 68 0 0 chr4 137971115 137971422 -46317240 + AluY SINE Alu 2 308 -3 2145 110 122 0 chr4 137971426 137971753 -46316909 - MER51B LTR ERV1 -10 367 1 2468 139 0 0 chr4 137971755 137972101 -46316561 - MER51B-int LTR ERV1 -1 7815 7470 579 214 61 0 chr4 137972101 137972232 -46316430 - LTR54B LTR ERV1 -357 141 3 9260 113 81 18 chr4 137972232 137972803 -46315859 - MER51B-int LTR ERV1 -390 7147 6614 2197 103 0 55 chr4 137972803 137973133 -46315529 - AluSx SINE Alu 0 312 1 9260 113 81 18 chr4 137973133 137973998 -46314664 - MER51B-int LTR ERV1 -923 6614 5620 613 131 20 0 chr4 137973988 137974087 -46314575 - MER51B-int LTR ERV1 -2188 5349 5249 * 1744 114 50 1 chr4 137974086 137974459 -46314203 - MER41-int LTR ERV1 -2572 2645 2210 * 2463 130 130 38 chr4 137974440 137974508 -46314154 - MER41-int LTR ERV1 -2581 3365 3305 2633 24 3 3 chr4 137974508 137974802 -46313860 - AluY SINE Alu -17 294 1 2463 130 130 38 chr4 137974802 137975233 -46313429 - MER41-int LTR ERV1 -2641 3305 2820 * 8474 93 71 7 chr4 137975206 137975770 -46312892 - MER41-int LTR ERV1 -4490 3326 2799 2334 105 0 19 chr4 137975770 137976085 -46312577 + AluSg SINE Alu 1 309 -1 8474 93 71 7 chr4 137976085 137976394 -46312268 - MER41-int LTR ERV1 -5017 2799 2511 2225 101 17 7 chr4 137976394 137976692 -46311970 + AluSq SINE Alu 1 301 -12 8474 93 71 7 chr4 137976692 137977179 -46311483 - MER41-int LTR ERV1 -5305 2511 1878 3241 102 147 14 chr4 137977179 137977738 -46310924 - LTR10E LTR ERV1 0 633 1 434 57 9 142 chr4 137977738 137977772 -46310890 - MER41-int LTR ERV1 -5934 1882 1845 2255 98 0 0 chr4 137977772 137978059 -46310603 + AluSc SINE Alu 1 287 -22 434 57 9 142 chr4 137978059 137978130 -46310532 - MER41-int LTR ERV1 -5971 1845 1791 677 166 46 26 chr4 137978134 137978312 -46310350 - MER4A LTR ERV1 -149 515 276 4857 138 39 35 chr4 137978370 137978498 -46310164 - MER51B-int LTR ERV1 -3462 2124 1998 2250 63 3 11 chr4 137978498 137978833 -46309829 - AluY SINE Alu 0 333 1 4857 138 39 35 chr4 137978833 137979792 -46308870 - MER51B-int LTR ERV1 -3588 1998 223 1480 149 12 12 chr4 137979793 137980042 -46308620 - MER51B-int LTR ERV1 -7565 251 3 2196 111 106 0 chr4 137980042 137980383 -46308279 - MER51B LTR ERV1 0 377 1 293 228 163 11 chr4 137980425 137980517 -46308145 + L2 LINE L2 3208 3313 0 2182 93 21 3 chr4 137981041 137981330 -46307332 + AluSg SINE Alu 1 294 -16 409 143 220 11 chr4 137981673 137981764 -46306898 - FRAM SINE Alu -13 163 54 564 58 0 0 chr4 137981777 137981846 -46306816 - MER51-int LTR ERV1 -6652 1164 1096 306 188 0 0 chr4 137981850 137981898 -46306764 - Alu SINE Alu -254 48 1 1491 170 44 4 chr4 137981921 137982213 -46306449 + AluJo SINE Alu 1 303 0 184 256 61 37 chr4 137982325 137982407 -46306255 + L2 LINE L2 2970 3053 -219 2473 77 3 0 chr4 137982628 137982925 -46305737 + AluSq SINE Alu 1 298 -15 1758 197 0 0 chr4 137983788 137984098 -46304564 + AluJo SINE Alu 1 310 -2 2358 84 0 13 chr4 137984762 137985072 -46303590 + AluSx SINE Alu 1 306 -6 1369 83 6 11 chr4 137985330 137985510 -46303152 - AluSg SINE Alu -131 179 1 820 127 42 0 chr4 137985600 137985718 -46302944 - FLAM_C SINE Alu -12 131 9 1708 156 59 10 chr4 137985735 137986023 -46302639 - AluJb SINE Alu -2 310 9 2235 122 3 0 chr4 137986028 137986339 -46302323 - AluSx SINE Alu 0 312 1 1820 152 92 11 chr4 137986627 137986996 -46301666 + L1MC2 LINE L1 5944 6342 -2 2086 130 3 10 chr4 137987008 137987308 -46301354 - AluSx SINE Alu -14 298 1 237 170 57 0 chr4 137987349 137987402 -46301260 + MIR SINE MIR 136 191 -71 22 0 0 0 chr4 137987454 137987476 -46301186 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 137988282 137988304 -46300358 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 137988553 137988581 -46300081 + AT_rich Low_complexity Low_complexity 1 28 0 527 320 33 0 chr4 137988712 137988893 -46299769 - L2 LINE L2 0 3313 3127 2019 115 75 37 chr4 137989059 137989094 -46299568 - MER46B DNA MER2_type -2495 236 204 1717 143 51 24 chr4 137989094 137989388 -46299274 + AluJb SINE Alu 5 306 -6 2019 115 75 37 chr4 137989388 137989700 -46298962 - MER46B DNA MER2_type -2527 204 1 411 292 128 30 chr4 137990122 137990458 -46298204 + L1ME4a LINE L1 5748 6116 -5 2362 85 3 0 chr4 137990471 137990765 -46297897 + AluSp SINE Alu 1 295 -18 219 114 0 0 chr4 137991103 137991138 -46297524 + (TG)n Simple_repeat Simple_repeat 1 35 0 237 208 28 69 chr4 137991758 137991830 -46296832 - MIR SINE MIR -11 251 183 367 203 366 33 chr4 137992240 137992393 -46296269 - MIR SINE MIR -28 234 31 2297 97 0 3 chr4 137993319 137993628 -46295034 + AluSx SINE Alu 1 308 -4 212 0 36 0 chr4 137993633 137993661 -46295001 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 302 205 36 71 chr4 137993820 137993932 -46294730 - MIR SINE MIR -25 237 130 1240 153 9 31 chr4 137994210 137994432 -46294230 + AluJo SINE Alu 92 308 -4 476 195 98 73 chr4 137994437 137994560 -46294102 + FLAM_C SINE Alu 8 133 -10 2261 105 3 0 chr4 137995587 137995882 -46292780 - AluSg SINE Alu -12 298 3 394 198 45 54 chr4 137995992 137996103 -46292559 - MLT1C LTR MaLR -36 431 322 3518 99 32 2 chr4 137996103 137996598 -46292064 + MER49 LTR ERV1 1 510 -413 1074 158 158 40 chr4 137996601 137996823 -46291839 + AluJo SINE Alu 6 253 -59 2843 134 7 9 chr4 137996852 137997041 -46291621 + MER49 LTR ERV1 498 686 -237 2062 142 127 43 chr4 137997041 137997393 -46291269 + MSTA LTR MaLR 1 391 -37 2176 119 10 0 chr4 137997393 137997687 -46290975 - AluSp SINE Alu -16 297 1 2062 142 127 43 chr4 137997687 137997729 -46290933 + MSTA LTR MaLR 391 428 0 2843 134 7 9 chr4 137997729 137997964 -46290698 + MER49 LTR ERV1 686 921 -2 1004 205 169 7 chr4 137997965 137998243 -46290419 - MLT1C LTR MaLR -143 324 2 1832 109 0 124 chr4 137998410 137998741 -46289921 - AluY SINE Alu -21 290 1 2113 127 0 0 chr4 137999063 137999355 -46289307 - AluSx SINE Alu -20 292 1 290 190 103 0 chr4 137999459 137999517 -46289145 - MER3 DNA MER1_type -2 207 144 706 171 0 16 chr4 137999521 137999644 -46289018 + FLAM_C SINE Alu 6 126 -17 2134 117 14 0 chr4 137999688 137999979 -46288683 + AluSx SINE Alu 1 295 -17 800 148 97 0 chr4 137999979 138000123 -46288539 - MER3 DNA MER1_type -47 115 1 2423 73 3 0 chr4 138000218 138000519 -46288143 + AluY SINE Alu 1 302 -9 883 206 213 29 chr4 138000757 138001072 -46287590 - MLT1D LTR MaLR -2 503 131 1022 211 10 0 chr4 138001149 138001357 -46287305 + AluJo SINE Alu 11 220 -92 353 113 0 0 chr4 138001357 138001410 -46287252 + AluY SINE Alu 84 136 -165 2073 47 127 7 chr4 138001411 138001686 -46286976 + AluY SINE Alu 4 311 0 2418 81 0 3 chr4 138002002 138002300 -46286362 - AluSp SINE Alu -16 297 1 25 31 0 0 chr4 138002741 138002773 -46285889 + AT_rich Low_complexity Low_complexity 1 32 0 679 150 108 17 chr4 138002846 138002966 -46285696 - FLAM_C SINE Alu 0 133 3 265 175 8 33 chr4 138003240 138003329 -46285333 + (TA)n Simple_repeat Simple_repeat 1 88 -29 1772 141 0 49 chr4 138003329 138003635 -46285027 - AluSx SINE Alu -21 291 1 265 175 8 33 chr4 138003635 138003665 -46284997 + (TA)n Simple_repeat Simple_repeat 88 117 0 180 0 0 0 chr4 138004040 138004060 -46284602 + (CAAAC)n Simple_repeat Simple_repeat 5 24 0 2341 72 7 26 chr4 138004082 138004388 -46284274 - AluY SINE Alu -11 300 1 2199 86 7 7 chr4 138005129 138005419 -46283243 - AluSq SINE Alu -23 290 1 2332 77 0 0 chr4 138006025 138006323 -46282339 - AluY SINE Alu -1 310 13 2320 91 13 0 chr4 138006335 138006643 -46282019 - AluSp SINE Alu -1 312 1 2374 96 3 10 chr4 138007004 138007316 -46281346 - AluSx SINE Alu -2 310 1 629 155 0 0 chr4 138007316 138007413 -46281249 - L1MC/D LINE L1 -621 5738 5642 1002 143 6 24 chr4 138007524 138007692 -46280970 - L1PA15 LINE L1 -8 6157 5993 27 0 0 0 chr4 138008004 138008031 -46280631 + AT_rich Low_complexity Low_complexity 1 27 0 184 246 15 0 chr4 138008484 138008549 -46280113 + CT-rich Low_complexity Low_complexity 1 66 0 1591 191 0 14 chr4 138008549 138008832 -46279830 - AluJo SINE Alu -33 279 1 437 252 35 21 chr4 138009035 138009178 -46279484 - MIR SINE MIR -44 218 74 284 328 33 0 chr4 138009448 138009570 -46279092 - L1MC4a LINE L1 -1893 5915 5790 993 247 113 50 chr4 138010763 138011284 -46277378 - L2 LINE L2 0 3313 2752 649 215 285 52 chr4 138011286 138011630 -46277032 + LTR16A1 LTR ERVL 1 424 -33 262 268 98 46 chr4 138011781 138011934 -46276728 - MLT1L LTR MaLR -27 588 428 1801 139 39 7 chr4 138011945 138012226 -46276436 + AluJb SINE Alu 1 290 -22 2316 87 3 10 chr4 138012336 138012647 -46276015 + AluSc SINE Alu 1 309 0 1258 214 121 79 chr4 138012693 138013054 -46275608 - L1MC4 LINE L1 -1 8041 7697 2314 98 3 0 chr4 138013054 138013349 -46275313 + AluSx SINE Alu 1 296 -16 1258 214 121 79 chr4 138013349 138013586 -46275076 - L1MC4 LINE L1 -345 7697 7471 1827 146 45 7 chr4 138013586 138013874 -46274788 - AluJo SINE Alu -13 299 1 1258 214 121 79 chr4 138013874 138014030 -46274632 - L1MC4 LINE L1 -571 7471 7136 202 94 16 62 chr4 138014095 138014159 -46274503 + (TA)n Simple_repeat Simple_repeat 1 61 0 211 140 0 60 chr4 138014214 138014264 -46274398 + (TA)n Simple_repeat Simple_repeat 2 48 0 23 0 0 0 chr4 138014315 138014338 -46274324 + AT_rich Low_complexity Low_complexity 1 23 0 1825 233 54 36 chr4 138014340 138014893 -46273769 - L1MC4 LINE L1 -1853 5955 5393 2523 62 0 3 chr4 138014894 138015199 -46273463 + AluY SINE Alu 1 304 -7 1884 146 4 4 chr4 138015210 138015491 -46273171 + AluJb SINE Alu 1 281 -31 324 0 0 0 chr4 138015491 138015527 -46273135 + (CA)n Simple_repeat Simple_repeat 1 36 0 2189 104 0 36 chr4 138015556 138015722 -46272940 - AluY SINE Alu -13 298 147 2542 40 3 3 chr4 138015722 138016022 -46272640 - AluY SINE Alu -11 300 1 2189 104 0 36 chr4 138016022 138016164 -46272498 - AluY SINE Alu -164 147 1 853 150 0 0 chr4 138016185 138016312 -46272350 - FLAM_C SINE Alu -4 129 3 285 317 16 14 chr4 138016341 138016635 -46272027 - L1MC4 LINE L1 -860 5286 5098 788 186 0 0 chr4 138016715 138016833 -46271829 + FLAM_C SINE Alu 1 118 -15 33 25 0 0 chr4 138016838 138016878 -46271784 + AT_rich Low_complexity Low_complexity 1 40 0 1443 231 116 29 chr4 138016880 138017323 -46271339 + MLT1H LTR MaLR 65 501 -4 2292 109 0 25 chr4 138017338 138017658 -46271004 + AluSq SINE Alu 1 312 -1 189 0 0 0 chr4 138017713 138017734 -46270928 + (T)n Simple_repeat Simple_repeat 1 21 0 1592 165 0 0 chr4 138017941 138018203 -46270459 + AluJo SINE Alu 46 307 0 951 164 6 28 chr4 138018346 138018523 -46270139 - AluSg/x SINE Alu -10 302 130 1911 144 10 0 chr4 138018624 138018923 -46269739 + AluSx SINE Alu 3 304 -8 1574 190 14 4 chr4 138019078 138019382 -46269280 + AluJo SINE Alu 1 307 0 768 108 29 0 chr4 138019901 138020003 -46268659 + U6 snRNA snRNA 3 107 0 1717 106 126 0 chr4 138020669 138020915 -46267747 + AluSq SINE Alu 18 294 -19 356 344 47 58 chr4 138021104 138021428 -46267234 + L2 LINE L2 2895 3267 -5 1486 82 0 5 chr4 138021605 138021799 -46266863 + AluSg/x SINE Alu 114 306 -6 1872 167 3 20 chr4 138021939 138022245 -46266417 - AluJb SINE Alu -11 301 1 227 31 31 0 chr4 138022336 138022368 -46266294 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 428 305 121 14 chr4 138023591 138023732 -46264930 - MIR3 SINE MIR -21 187 32 23 0 0 0 chr4 138023880 138023903 -46264759 + AT_rich Low_complexity Low_complexity 1 23 0 2265 106 13 3 chr4 138023905 138024206 -46264456 + AluSq SINE Alu 1 304 -9 619 269 18 18 chr4 138024217 138024384 -46264278 + Zaphod DNA AcHobo 277 443 -3588 2245 93 7 0 chr4 138024511 138024801 -46263861 - AluSq SINE Alu -21 292 1 255 195 102 59 chr4 138024821 138024939 -46263723 - L1MC4 LINE L1 0 8042 7920 2594 62 0 0 chr4 138025062 138025367 -46263295 - AluY SINE Alu -6 305 1 305 297 47 20 chr4 138025427 138025575 -46263087 - L1ME3A LINE L1 -223 5947 5796 558 117 21 43 chr4 138025724 138025818 -46262844 + AluSg/x SINE Alu 209 300 -12 649 359 61 33 chr4 138026515 138026571 -46262091 - L1ME3A LINE L1 -376 5794 5741 2371 68 10 0 chr4 138026571 138026865 -46261797 - AluSp SINE Alu -16 297 1 649 359 61 33 chr4 138026865 138027858 -46260804 - L1ME3A LINE L1 -429 5741 4715 2261 109 3 0 chr4 138027891 138028202 -46260460 - AluSp SINE Alu -1 312 1 400 155 28 0 chr4 138028602 138028673 -46259989 - LTR45 LTR ERV1 -63 462 390 315 0 0 0 chr4 138029241 138029276 -46259386 + (CA)n Simple_repeat Simple_repeat 2 36 0 1814 116 58 0 chr4 138029292 138029550 -46259112 - AluSx SINE Alu -39 273 1 389 224 0 0 chr4 138029573 138029649 -46259013 - MER116 DNA Mariner 0 80 5 320 353 42 57 chr4 138029686 138029982 -46258680 - L2 LINE L2 -5 3267 2924 254 292 39 46 chr4 138030259 138030389 -46258273 - L2 LINE L2 -74 3239 3111 2447 67 0 3 chr4 138030427 138030724 -46257938 - AluY SINE Alu -14 297 2 339 162 265 0 chr4 138030821 138030889 -46257773 + AluSg SINE Alu 12 97 -203 25 0 0 28 chr4 138031394 138031413 -46257249 + AT_rich Low_complexity Low_complexity 1 20 -15 2156 99 17 0 chr4 138031413 138031707 -46256955 - AluSq SINE Alu -14 299 1 25 0 0 28 chr4 138031707 138031723 -46256939 + AT_rich Low_complexity Low_complexity 20 35 0 23 33 0 0 chr4 138032271 138032301 -46256361 + AT_rich Low_complexity Low_complexity 1 30 0 257 222 62 25 chr4 138032425 138032506 -46256156 + MIR SINE MIR 125 208 -54 2378 96 0 6 chr4 138032518 138032830 -46255832 - AluY SINE Alu -1 310 1 2344 58 10 3 chr4 138033043 138033338 -46255324 + AluY SINE Alu 2 298 -13 251 275 142 25 chr4 138033796 138033916 -46254746 - MIR SINE MIR -56 206 73 268 242 112 96 chr4 138034703 138034881 -46253781 - MIR SINE MIR 0 262 82 227 235 127 25 chr4 138034975 138035054 -46253608 - MIR SINE MIR -111 97 20 415 213 150 31 chr4 138035108 138035235 -46253427 + MIR SINE MIR 52 193 -69 1463 213 3 19 chr4 138036368 138036678 -46251984 + AluJb SINE Alu 1 305 -7 2496 59 7 3 chr4 138036744 138037047 -46251615 + AluSp SINE Alu 1 304 -9 791 183 8 0 chr4 138037060 138037191 -46251471 + FLAM_C SINE Alu 2 133 -10 1641 197 7 7 chr4 138037251 138037560 -46251102 - AluJo SINE Alu -3 309 1 2364 89 0 0 chr4 138037564 138037855 -46250807 - AluSg SINE Alu -19 291 1 236 265 231 0 chr4 138041942 138042089 -46246573 - L1MC4 LINE L1 0 8042 7862 1631 128 0 0 chr4 138042101 138042327 -46246335 + AluSx SINE Alu 1 226 -86 1951 168 0 0 chr4 138042443 138042747 -46245915 - AluSx SINE Alu -8 304 1 1026 143 0 50 chr4 138042759 138042920 -46245742 - AluSg/x SINE Alu -26 286 134 431 289 206 4 chr4 138042921 138043174 -46245488 + L2 LINE L2 3010 3313 0 281 330 0 22 chr4 138043497 138043588 -46245074 + MER5B DNA MER1_type 89 177 -1 23 0 0 0 chr4 138043614 138043637 -46245025 + AT_rich Low_complexity Low_complexity 1 23 0 920 199 56 0 chr4 138043646 138043807 -46244855 + FAM SINE Alu 1 170 -5 1650 160 22 56 chr4 138044413 138044732 -46243930 + AluJb SINE Alu 1 308 -4 1374 220 215 14 chr4 138044971 138045385 -46243277 - MLT1F1 LTR MaLR -7 560 64 1901 161 0 10 chr4 138045461 138045766 -46242896 - AluJo SINE Alu -10 302 1 322 301 106 0 chr4 138045767 138045880 -46242782 - MLT1F1-int LTR MaLR -27 1344 1220 435 313 42 10 chr4 138046795 138046987 -46241675 - MLT1F1-int LTR MaLR -1173 198 1 766 223 0 18 chr4 138046987 138047153 -46241509 - MLT1F1 LTR MaLR 0 567 405 772 164 9 0 chr4 138047153 138047269 -46241393 + FLAM_C SINE Alu 2 118 -25 22 0 0 0 chr4 138047269 138047291 -46241371 + AT_rich Low_complexity Low_complexity 1 22 0 808 250 142 21 chr4 138047298 138047641 -46241021 - MLT1F1 LTR MaLR -169 373 1 2119 104 42 0 chr4 138047896 138048183 -46240479 + AluY SINE Alu 1 299 -12 1972 118 33 15 chr4 138048183 138048513 -46240149 + L1M4c LINE L1 1617 1952 -4432 2355 165 94 25 chr4 138048963 138049436 -46239226 + L1M4c LINE L1 1843 2282 -4100 1530 176 137 13 chr4 138049436 138049743 -46238919 + MER7A DNA MER2_type 4 346 0 2355 165 94 25 chr4 138049743 138049939 -46238723 + L1M4c LINE L1 2282 2463 -3919 1784 171 3 0 chr4 138049939 138050237 -46238425 + AluJo SINE Alu 5 303 -9 2355 165 94 25 chr4 138050237 138050696 -46237966 + L1M4c LINE L1 2463 3145 -3237 2971 221 34 56 chr4 138051024 138051937 -46236725 + L1M4c LINE L1 3132 4024 -2358 1761 153 90 25 chr4 138051940 138052026 -46236636 - MER6 DNA MER2_type -3 862 783 1532 181 72 0 chr4 138052026 138052302 -46236360 + AluJb SINE Alu 2 297 -15 1761 153 90 25 chr4 138052302 138052580 -46236082 - MER6 DNA MER2_type -82 783 474 1332 190 30 26 chr4 138052582 138052871 -46235791 + AluJb SINE Alu 17 306 0 2830 170 9 7 chr4 138052877 138053341 -46235321 + L1M1 LINE L1 16 480 -7085 1698 92 5 0 chr4 138053442 138053660 -46235002 - AluY SINE Alu -92 219 1 21 0 0 0 chr4 138053719 138053740 -46234922 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr4 138053784 138053832 -46234830 + AT_rich Low_complexity Low_complexity 1 48 0 398 299 135 10 chr4 138054214 138054421 -46234241 + MIR SINE MIR 2 234 -28 1532 199 7 3 chr4 138054637 138054934 -46233728 - AluJo SINE Alu -14 298 1 190 0 67 0 chr4 138055183 138055213 -46233449 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1903 91 0 8 chr4 138055215 138055457 -46233205 - AluSc SINE Alu -21 288 49 1701 169 10 17 chr4 138055469 138055759 -46232903 - AluJo SINE Alu -24 288 1 1918 166 0 0 chr4 138055863 138056158 -46232504 + AluSx SINE Alu 1 295 -17 2127 138 0 0 chr4 138056226 138056537 -46232125 + AluSq SINE Alu 1 311 -2 191 276 40 40 chr4 138057164 138057240 -46231422 + L2 LINE L2 3184 3259 -54 387 229 165 80 chr4 138057445 138057633 -46231029 - MIR SINE MIR -57 205 2 354 191 0 36 chr4 138057676 138057760 -46230902 - MLT1A1 LTR MaLR -284 81 1 32 0 0 0 chr4 138058156 138058188 -46230474 + AT_rich Low_complexity Low_complexity 1 32 0 2109 125 3 0 chr4 138058915 138059210 -46229452 + AluSx SINE Alu 1 296 -16 2229 117 10 0 chr4 138059311 138059609 -46229053 + AluSx SINE Alu 1 301 -11 748 178 0 52 chr4 138059801 138059936 -46228726 - FLAM_C SINE Alu -14 129 2 711 242 67 90 chr4 138060938 138061053 -46227609 + HAL1 LINE L1 1152 1268 -1239 1510 166 12 80 chr4 138061053 138061379 -46227283 - AluJo SINE Alu -8 304 1 711 242 67 90 chr4 138061379 138061739 -46226923 + HAL1 LINE L1 1268 1616 -891 1791 173 38 0 chr4 138061740 138062053 -46226609 - MER2 DNA MER2_type 0 345 21 2234 100 3 0 chr4 138062092 138062382 -46226280 + AluSx SINE Alu 1 291 -21 2237 107 0 0 chr4 138062490 138062780 -46225882 + AluSg SINE Alu 1 290 -20 811 261 93 80 chr4 138062826 138063154 -46225508 + HAL1 LINE L1 1850 2191 -316 2100 115 0 55 chr4 138063154 138063484 -46225178 + AluSx SINE Alu 1 312 0 811 261 93 80 chr4 138063484 138063768 -46224894 + HAL1 LINE L1 2191 2470 -37 489 172 242 0 chr4 138064094 138064193 -46224469 - AluJb SINE Alu -16 296 174 221 257 58 99 chr4 138064205 138064376 -46224286 + L2 LINE L2 2327 2490 -824 209 291 58 12 chr4 138064400 138064486 -46224176 + L2 LINE L2 2606 2695 -619 653 292 87 77 chr4 138064809 138065737 -46222925 + L1MEc LINE L1 36 953 -5443 1993 139 0 54 chr4 138065737 138066053 -46222609 + AluSx SINE Alu 1 299 -13 2413 91 0 0 chr4 138066053 138066360 -46222302 + AluSc SINE Alu 1 307 -2 653 292 87 77 chr4 138066360 138066411 -46222251 + L1MEc LINE L1 953 1002 -5394 2090 132 0 3 chr4 138066411 138066714 -46221948 + AluSx SINE Alu 1 302 -10 653 292 87 77 chr4 138066714 138066880 -46221782 + L1MEc LINE L1 1002 1195 -5201 1979 114 4 0 chr4 138066972 138067263 -46221399 + AluSx SINE Alu 19 310 0 2139 105 0 14 chr4 138067365 138067674 -46220988 + AluSx SINE Alu 1 305 0 1924 157 0 10 chr4 138067682 138067982 -46220680 + AluJo SINE Alu 1 297 -15 945 256 45 4 chr4 138068490 138068732 -46219930 - MIR SINE MIR 0 262 11 237 211 221 10 chr4 138068782 138068886 -46219776 - L1ME4a LINE L1 -8 6113 5988 1466 171 87 7 chr4 138068994 138069269 -46219393 + AluJo SINE Alu 1 297 -15 305 317 101 32 chr4 138069418 138069589 -46219073 - MIR3 SINE MIR -72 190 9 742 82 10 0 chr4 138070170 138070268 -46218394 - AluS SINE Alu -212 100 2 1352 165 104 0 chr4 138070750 138070999 -46217663 + AluJb SINE Alu 14 288 -24 403 320 113 82 chr4 138071066 138071419 -46217243 + L1MDb LINE L1 35 398 -5998 1086 84 0 0 chr4 138071429 138071560 -46217102 + AluSq/x SINE Alu 5 135 -177 2193 127 0 6 chr4 138071560 138071875 -46216787 + AluSq SINE Alu 1 313 0 2072 130 3 0 chr4 138071928 138072221 -46216441 + AluSx SINE Alu 1 294 -18 2377 125 73 14 chr4 138072456 138072800 -46215862 - THE1B LTR MaLR 0 364 1 479 302 94 45 chr4 138072801 138073132 -46215530 + L1MEc LINE L1 656 1002 -5394 2424 70 0 38 chr4 138073136 138073451 -46215211 + AluY SINE Alu 1 303 -8 707 206 0 16 chr4 138073456 138073582 -46215080 + FLAM_C SINE Alu 2 125 -18 288 167 31 176 chr4 138073666 138073893 -46214769 + L1M4 LINE L1 3054 3247 -2899 669 208 8 0 chr4 138073968 138074088 -46214574 + FLAM_C SINE Alu 2 122 -21 2286 109 0 0 chr4 138074097 138074408 -46214254 + AluSx SINE Alu 1 311 -1 379 279 184 9 chr4 138074592 138074907 -46213755 + L1MDb LINE L1 563 932 -5286 373 189 159 45 chr4 138074927 138075059 -46213603 + L1MDb LINE L1 1029 1175 -5043 1646 192 16 0 chr4 138075185 138075492 -46213170 + AluJb SINE Alu 1 312 0 1093 82 0 0 chr4 138075512 138075647 -46213015 + AluSg SINE Alu 1 135 -175 1816 117 0 19 chr4 138075647 138075911 -46212751 - AluSx SINE Alu -53 259 1 201 290 32 54 chr4 138075990 138076058 -46212604 - L3 LINE CR1 -350 1227 1160 2105 122 21 0 chr4 138076058 138076346 -46212316 - AluSx SINE Alu -18 294 1 201 290 32 54 chr4 138076346 138076370 -46212292 - L3 LINE CR1 -417 1160 1137 751 120 9 28 chr4 138076432 138076540 -46212122 - U6 snRNA snRNA -1 106 1 246 241 65 46 chr4 138076817 138076925 -46211737 - L3 LINE CR1 -490 1087 978 2258 94 3 0 chr4 138077278 138077576 -46211086 - AluSg SINE Alu -11 299 1 365 260 47 30 chr4 138078638 138078807 -46209855 + HAL1b LINE L1 490 661 -687 21 0 0 0 chr4 138079023 138079044 -46209618 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 138079113 138079136 -46209526 + AT_rich Low_complexity Low_complexity 1 23 0 1691 165 7 0 chr4 138079370 138079680 -46208982 - AluJb SINE Alu 0 312 1 663 51 0 0 chr4 138079764 138079842 -46208820 + AluY SINE Alu 209 286 -25 501 68 0 0 chr4 138079842 138079916 -46208746 + (CCTAA)n Simple_repeat Simple_repeat 2 75 0 2170 118 0 0 chr4 138079942 138080230 -46208432 + AluSc SINE Alu 1 288 -21 2125 93 27 10 chr4 138081081 138081381 -46207281 + AluSp SINE Alu 1 305 -8 1779 167 3 17 chr4 138081645 138081944 -46206718 - AluSx SINE Alu -16 296 2 2048 75 108 0 chr4 138082402 138082670 -46205992 - AluSc SINE Alu -12 297 1 2308 214 74 44 chr4 138082958 138083963 -46204699 - L1MC4 LINE L1 0 8042 6907 1118 251 131 49 chr4 138085405 138085561 -46203101 - L2 LINE L2 -1345 1969 1827 2394 65 0 3 chr4 138085561 138085853 -46202809 + AluY SINE Alu 1 291 -20 1118 251 131 49 chr4 138085853 138086245 -46202417 - L2 LINE L2 -1487 1827 1376 187 234 0 21 chr4 138086244 138086291 -46202371 - L2 LINE L2 -6 3307 3262 * 1808 102 113 0 chr4 138086477 138086743 -46201919 - AluSp SINE Alu -17 296 1 494 192 108 85 chr4 138086864 138086994 -46201668 - FLAM_A SINE Alu -9 133 1 919 193 104 20 chr4 138087046 138087248 -46201414 - MER20 DNA MER1_type 0 219 1 1842 150 0 37 chr4 138087277 138087577 -46201085 + AluJb SINE Alu 6 294 -18 693 268 35 44 chr4 138087602 138087673 -46200989 + MIR SINE MIR 37 107 -155 2840 10 0 0 chr4 138087673 138087983 -46200679 + AluYb8 SINE Alu 1 310 -8 693 268 35 44 chr4 138087983 138088094 -46200568 + MIR SINE MIR 107 219 -43 1974 127 17 13 chr4 138088094 138088393 -46200269 + AluJb SINE Alu 1 300 -12 693 268 35 44 chr4 138088393 138088437 -46200225 + MIR SINE MIR 219 262 0 21 0 0 0 chr4 138089349 138089370 -46199292 + AT_rich Low_complexity Low_complexity 1 21 0 2028 122 3 7 chr4 138089625 138089919 -46198743 + AluSx SINE Alu 1 293 -19 749 185 0 0 chr4 138090084 138090214 -46198448 + FLAM_C SINE Alu 2 131 -2 2300 108 0 0 chr4 138092035 138092331 -46196331 - AluSx SINE Alu -16 296 1 22 35 0 0 chr4 138092336 138092365 -46196297 + AT_rich Low_complexity Low_complexity 1 29 0 2387 98 0 0 chr4 138092585 138092890 -46195772 - AluSq SINE Alu -8 305 1 1820 173 0 10 chr4 138094211 138094517 -46194145 - AluJb SINE Alu -5 307 5 1465 213 38 69 chr4 138094552 138094811 -46193851 - L1MC5 LINE L1 -50 7911 7645 2091 107 10 17 chr4 138094811 138095100 -46193562 - AluSx SINE Alu -24 288 2 1465 213 38 69 chr4 138095100 138095446 -46193216 - L1MC5 LINE L1 -316 7645 7325 803 191 53 16 chr4 138095449 138095637 -46193025 - MER3 DNA MER1_type -9 200 6 885 178 138 148 chr4 138095643 138096340 -46192322 - L1MC5 LINE L1 -626 7335 6646 232 264 181 42 chr4 138096362 138096547 -46192115 - MIR3 SINE MIR -56 206 4 23 68 0 0 chr4 138096689 138096733 -46191929 + AT_rich Low_complexity Low_complexity 1 44 0 1857 159 0 28 chr4 138098098 138098418 -46190244 - AluSx SINE Alu -1 311 1 46 19 0 0 chr4 138098433 138098486 -46190176 + AT_rich Low_complexity Low_complexity 1 53 0 618 0 0 0 chr4 138098486 138098554 -46190108 - L1PA6 LINE L1 -13 6141 6074 711 210 32 25 chr4 138098930 138099087 -46189575 - FAM SINE Alu -17 158 1 529 152 28 10 chr4 138099088 138099209 -46189453 - L1MD1 LINE L1 -330 5826 5706 2114 112 14 0 chr4 138099545 138099839 -46188823 - AluSp SINE Alu -15 298 1 2024 101 44 20 chr4 138100241 138100538 -46188124 - AluSx SINE Alu -6 306 3 264 30 0 0 chr4 138100604 138100637 -46188025 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 890 164 67 72 chr4 138101189 138101270 -46187392 + MER3 DNA MER1_type 2 82 -127 2038 133 7 0 chr4 138101270 138101572 -46187090 - AluJb SINE Alu -8 304 1 890 164 67 72 chr4 138101572 138101698 -46186964 + MER3 DNA MER1_type 82 208 -1 2308 74 7 0 chr4 138101961 138102266 -46186396 - AluY SINE Alu 0 307 1 1967 117 0 57 chr4 138102606 138102922 -46185740 - AluSq SINE Alu -15 298 1 255 86 0 0 chr4 138103142 138103177 -46185485 - Alu SINE Alu -266 35 1 433 214 40 63 chr4 138103179 138103305 -46185357 - L2 LINE L2 0 3313 3191 196 264 57 0 chr4 138105243 138105296 -46183366 - L2 LINE L2 -9 3263 3208 1879 92 26 73 chr4 138106042 138106345 -46182317 - AluSx SINE Alu -23 289 1 297 235 139 17 chr4 138107361 138107476 -46181186 - L1MD1 LINE L1 -390 5731 5603 1704 179 17 0 chr4 138107619 138107915 -46180747 - AluJo SINE Alu 0 312 12 23 0 0 0 chr4 138108084 138108107 -46180555 + AT_rich Low_complexity Low_complexity 1 23 0 246 202 40 40 chr4 138108112 138108211 -46180451 - L1MD1 LINE L1 -1089 5057 4959 375 383 64 4 chr4 138108555 138108790 -46179872 - L1MD1 LINE L1 -1871 4275 4027 364 164 0 0 chr4 138108921 138108976 -46179686 - Alu SINE Alu -247 55 1 272 280 10 10 chr4 138109152 138109252 -46179410 + GA-rich Low_complexity Low_complexity 3 102 0 462 292 143 14 chr4 138109488 138109697 -46178965 + MIR SINE MIR 1 236 -26 1012 161 0 42 chr4 138110197 138110365 -46178297 + FAM SINE Alu 1 42 -7 405 0 0 0 chr4 138110369 138110414 -46178248 + (CA)n Simple_repeat Simple_repeat 1 45 0 2347 57 0 4 chr4 138110786 138111087 -46177575 - AluY SINE Alu 0 300 1 1654 138 90 51 chr4 138111688 138111750 -46176912 - MER7A DNA MER2_type -2692 346 288 1910 156 17 0 chr4 138111750 138112052 -46176610 - AluJb SINE Alu -5 307 1 1654 138 90 51 chr4 138112052 138112323 -46176339 - MER7A DNA MER2_type -2750 288 2 2166 112 3 25 chr4 138112561 138112875 -46175787 - AluSx SINE Alu -5 307 1 453 326 94 57 chr4 138113822 138114205 -46174457 - ERVL LTR ERVL -663 5101 4705 276 30 0 0 chr4 138114313 138114346 -46174316 + (TTTTC)n Simple_repeat Simple_repeat 4 36 0 23 0 0 0 chr4 138114700 138114723 -46173939 + AT_rich Low_complexity Low_complexity 1 23 0 200 286 12 12 chr4 138114923 138115007 -46173655 + CT-rich Low_complexity Low_complexity 4 87 0 22 35 0 0 chr4 138115140 138115169 -46173493 + AT_rich Low_complexity Low_complexity 1 29 0 410 196 41 21 chr4 138115602 138115699 -46172963 + MIR SINE MIR 164 262 0 2353 81 0 3 chr4 138116125 138116420 -46172242 + AluSp SINE Alu 1 294 -19 22 35 0 0 chr4 138116499 138116528 -46172134 + AT_rich Low_complexity Low_complexity 1 29 0 314 301 85 39 chr4 138118229 138118382 -46170280 - MIR3 SINE MIR -6 202 43 2112 117 0 3 chr4 138118632 138118922 -46169740 + AluSx SINE Alu 1 289 -23 28 0 0 0 chr4 138120425 138120453 -46168209 + AT_rich Low_complexity Low_complexity 1 28 0 435 243 135 38 chr4 138121769 138121954 -46166708 - MER112 DNA MER1_type -9 251 49 280 288 192 7 chr4 138122041 138122187 -46166475 - MIR SINE MIR 0 262 90 2225 107 0 0 chr4 138122351 138122641 -46166021 - AluSx SINE Alu -22 290 1 1788 161 7 4 chr4 138123066 138123345 -46165317 + AluJb SINE Alu 2 281 -31 1018 182 0 0 chr4 138123479 138123644 -46165018 + AluJb SINE Alu 137 301 -11 745 202 0 0 chr4 138124006 138124135 -46164527 + FLAM_A SINE Alu 1 129 -4 321 0 61 0 chr4 138124141 138124190 -46164472 + (TA)n Simple_repeat Simple_repeat 2 53 0 1398 217 31 3 chr4 138125418 138125704 -46162958 + AluJb SINE Alu 1 294 -18 337 257 0 0 chr4 138126455 138126525 -46162137 - MER96 DNA MER1_type? -105 70 1 198 0 0 0 chr4 138128065 138128087 -46160575 + (T)n Simple_repeat Simple_repeat 1 22 0 1645 114 118 11 chr4 138130357 138130629 -46158033 - AluSg1 SINE Alu -8 301 1 667 232 0 0 chr4 138130742 138130867 -46157795 - FLAM_A SINE Alu -8 125 1 334 276 35 60 chr4 138132872 138132988 -46155674 - MER5B DNA MER1_type -9 169 57 224 273 0 0 chr4 138133046 138133090 -46155572 - MER5B DNA MER1_type -134 44 1 2300 73 3 0 chr4 138133162 138133450 -46155212 + AluSp SINE Alu 1 289 -24 2067 100 0 78 chr4 138134329 138134650 -46154012 - AluSx SINE Alu -16 296 1 13673 122 53 26 chr4 138134714 138134916 -46153746 - Tigger1 DNA MER2_type -1 2417 2222 2301 88 7 0 chr4 138134916 138135213 -46153449 - AluSp SINE Alu -14 299 1 13673 122 53 26 chr4 138135213 138135675 -46152987 - Tigger1 DNA MER2_type -196 2222 1774 1864 113 65 17 chr4 138135675 138135968 -46152694 - AluSx SINE Alu -2 310 4 13673 122 53 26 chr4 138135968 138136004 -46152658 - Tigger1 DNA MER2_type -644 1774 1740 1840 155 7 10 chr4 138136004 138136295 -46152367 - AluJb SINE Alu -22 290 1 1867 143 28 3 chr4 138136295 138136582 -46152080 - AluJb SINE Alu -18 294 1 13673 122 53 26 chr4 138136582 138138231 -46150431 - Tigger1 DNA MER2_type -677 1741 1 288 342 128 0 chr4 138138361 138138478 -46150184 - L2 LINE L2 -5 3267 3136 2240 90 14 0 chr4 138138677 138138967 -46149695 + AluSp SINE Alu 1 294 -19 1105 103 91 0 chr4 138138980 138139145 -46149517 + AluSq SINE Alu 127 306 -7 1949 158 26 0 chr4 138139632 138139935 -46148727 + AluJb SINE Alu 1 311 -1 216 267 248 20 chr4 138140946 138141047 -46147615 + MIR SINE MIR 1 124 -138 278 316 51 20 chr4 138141151 138141249 -46147413 - L2 LINE L2 -35 3237 3137 779 375 86 21 chr4 138141524 138142082 -46146580 + L2 LINE L2 2251 2844 -470 2801 100 54 10 chr4 138142628 138143038 -46145624 - MSTA LTR MaLR 0 428 1 999 191 126 46 chr4 138143117 138143379 -46145283 - AluJo SINE Alu -25 287 5 444 248 89 32 chr4 138143647 138143666 -46144996 - L1MA10 LINE L1 0 6334 6316 1132 230 86 26 chr4 138143666 138144014 -46144648 - L1ME1 LINE L1 -5 6161 5793 196 261 65 0 chr4 138144634 138144680 -46143982 + L2 LINE L2 3224 3272 0 2229 102 0 0 chr4 138145605 138145922 -46142740 + AluSq SINE Alu 1 317 0 2031 114 53 0 chr4 138146077 138146358 -46142304 + AluSx SINE Alu 6 301 -11 699 300 21 98 chr4 138146714 138147101 -46141561 - L2 LINE L2 -1 3271 2915 224 265 253 0 chr4 138147132 138147215 -46141447 + MIR SINE MIR 159 262 0 2197 76 9 67 chr4 138147250 138147580 -46141082 + AluSp SINE Alu 1 311 -2 197 324 265 15 chr4 138147587 138147859 -46140803 - L2 LINE L2 -454 2860 2521 1020 183 46 90 chr4 138147861 138148257 -46140405 - MLT1C LTR MaLR -3 387 13 547 316 180 19 chr4 138148283 138148745 -46139917 - L2 LINE L2 -793 2521 1986 241 232 85 113 chr4 138148755 138148932 -46139730 - L2 LINE L2 -1473 1841 1670 239 248 128 51 chr4 138149098 138149215 -46139447 - L2 LINE L2 0 3313 3188 627 172 111 0 chr4 138149226 138149325 -46139337 + FLAM_A SINE Alu 1 110 -32 180 0 0 0 chr4 138149330 138149350 -46139312 + (GGGGA)n Simple_repeat Simple_repeat 4 23 0 471 199 8 15 chr4 138149350 138149481 -46139181 + GA-rich Low_complexity Low_complexity 3 132 0 1908 251 90 44 chr4 138149487 138149714 -46138948 - L2 LINE L2 -164 3149 2934 2378 103 0 3 chr4 138149714 138150025 -46138637 + AluSq SINE Alu 1 310 -3 1908 251 90 44 chr4 138150025 138150438 -46138224 - L2 LINE L2 -379 2934 2474 198 293 94 19 chr4 138150554 138150660 -46138002 - MIR SINE MIR -30 232 119 364 184 105 18 chr4 138151044 138151158 -46137504 - L1MB3 LINE L1 0 6183 6060 * 3507 193 34 46 chr4 138151132 138151815 -46136847 - L1MA4 LINE L1 -279 6021 5332 2165 95 27 14 chr4 138151815 138152109 -46136553 - AluSc SINE Alu -11 298 1 3507 193 34 46 chr4 138152109 138152817 -46135845 - L1MA4 LINE L1 -968 5332 4639 4704 50 33 2 chr4 138153155 138154156 -46134506 + MER11A LTR ERVK 1 1266 0 220 71 71 0 chr4 138154213 138154255 -46134407 + CT-rich Low_complexity Low_complexity 4 48 0 1672 102 180 0 chr4 138154321 138154576 -46134086 - AluSx SINE Alu -11 301 1 526 255 109 58 chr4 138154708 138154952 -46133710 + MIR SINE MIR 11 262 0 262 339 74 0 chr4 138154962 138155083 -46133579 + MIR3 SINE MIR 77 206 -2 490 276 90 72 chr4 138155219 138155651 -46133011 - L1ME4a LINE L1 -113 6008 5569 509 239 9 75 chr4 138155700 138155926 -46132736 - L1ME4a LINE L1 -1448 4698 4488 21 0 0 0 chr4 138155968 138155989 -46132673 + AT_rich Low_complexity Low_complexity 1 21 0 1916 142 28 0 chr4 138156000 138156321 -46132341 - AluSx SINE Alu 0 312 2 612 291 121 35 chr4 138156388 138156670 -46131992 - L2 LINE L2 0 3313 3008 989 305 98 35 chr4 138157123 138157171 -46131491 + L2 LINE L2 185 229 -3085 2303 97 3 0 chr4 138157171 138157469 -46131193 - AluSx SINE Alu -11 301 3 989 305 98 35 chr4 138157469 138157882 -46130780 + L2 LINE L2 229 683 -2631 2214 94 0 14 chr4 138157882 138158179 -46130483 - AluY SINE Alu -18 293 1 989 305 98 35 chr4 138158179 138158224 -46130438 + L2 LINE L2 683 724 -2590 901 253 93 37 chr4 138158294 138158618 -46130044 - LTR40b LTR ERVL -1 461 120 3423 210 102 54 chr4 138158820 138159016 -46129646 + L1MDa LINE L1 1005 1190 -5350 2241 216 52 18 chr4 138159016 138159517 -46129145 + LTR40a LTR ERVL 1 518 -1 3423 210 102 54 chr4 138159517 138160092 -46128570 + L1MDa LINE L1 1190 1736 -4804 2417 81 0 3 chr4 138160092 138160389 -46128273 - AluY SINE Alu -15 296 1 3423 210 102 54 chr4 138160389 138160684 -46127978 + L1MDa LINE L1 1736 2141 -4399 3318 53 35 0 chr4 138160684 138161079 -46127583 - L1PA7 LINE L1 0 6154 5746 3423 210 102 54 chr4 138161079 138161236 -46127426 + L1MDa LINE L1 2141 2289 -4251 846 241 132 13 chr4 138161305 138161616 -46127046 + L2 LINE L2 2924 3271 -42 735 241 54 26 chr4 138161669 138162109 -46126553 - L1ME LINE L1 -3634 2446 1993 2591 38 0 0 chr4 138162127 138162417 -46126245 - AluY SINE Alu -15 296 7 880 252 51 21 chr4 138162833 138163067 -46125595 - MIR SINE MIR -21 241 1 2056 121 59 35 chr4 138163077 138163341 -46125321 - MER7A DNA MER2_type -2692 346 73 1309 167 31 4 chr4 138163341 138163569 -46125093 - MER46A DNA MER2_type 0 236 3 2056 121 59 35 chr4 138163569 138163643 -46125019 - MER7A DNA MER2_type -2965 73 2 552 304 74 11 chr4 138163684 138164026 -46124636 - L1ME LINE L1 -861 1580 1172 543 242 58 9 chr4 138164064 138164247 -46124415 + L1ME2 LINE L1 5972 6166 0 311 210 133 67 chr4 138164278 138164473 -46124189 + L1MC4 LINE L1 7831 8038 -4 533 251 31 58 chr4 138164497 138164651 -46124011 - L1ME LINE L1 -4954 1116 970 1740 166 3 11 chr4 138164651 138164935 -46123727 - AluJo SINE Alu -20 292 11 533 251 31 58 chr4 138164935 138165039 -46123623 - L1ME LINE L1 -5100 970 865 843 233 87 30 chr4 138165244 138165695 -46122967 - L1ME LINE L1 -5069 1001 531 1342 121 150 177 chr4 138166137 138166188 -46122474 - THE1C LTR MaLR 0 428 377 2174 110 10 0 chr4 138166188 138166480 -46122182 - AluSg SINE Alu -15 295 1 1342 121 150 177 chr4 138166480 138166637 -46122025 - THE1C LTR MaLR -51 377 217 248 0 0 30 chr4 138166637 138166670 -46121992 + (TTA)n Simple_repeat Simple_repeat 3 34 0 3459 14 0 0 chr4 138166670 138167038 -46121624 - L1PA3 LINE L1 -18 6137 5770 12626 23 0 0 chr4 138167040 138169194 -46119468 - L1PA2 LINE L1 0 6155 4002 1342 121 150 177 chr4 138169194 138169420 -46119242 - THE1C LTR MaLR -211 217 1 4555 153 40 8 chr4 138170018 138170810 -46117852 - L1 LINE L1 -1817 5748 4931 2202 98 7 3 chr4 138170817 138171114 -46117548 - AluSx SINE Alu -14 298 1 3783 75 27 20 chr4 138171114 138171510 -46117152 - L1 LINE L1 -4400 3165 2762 1899 155 24 3 chr4 138171510 138171807 -46116855 - AluSx SINE Alu -9 303 1 3783 75 27 20 chr4 138171807 138171959 -46116703 - L1 LINE L1 -4803 2762 2613 2346 108 0 0 chr4 138171962 138172259 -46116403 - AluSx SINE Alu -15 297 1 1256 166 5 31 chr4 138172286 138172360 -46116302 - L1M1 LINE L1 -6955 610 536 2393 90 0 0 chr4 138172360 138172661 -46116001 + AluSg1 SINE Alu 1 301 -8 1256 166 5 31 chr4 138172661 138172809 -46115853 - L1M1 LINE L1 -7029 536 394 2687 26 7 0 chr4 138272883 138273188 -46015474 - AluYb8 SINE Alu -11 307 1 2015 118 3 36 chr4 138273193 138273497 -46015165 - AluY SINE Alu -17 294 1 1022 212 54 123 chr4 138273963 138274355 -46014307 + MLT2D LTR ERVL 16 377 -37 261 0 0 0 chr4 138274355 138274384 -46014278 + (TG)n Simple_repeat Simple_repeat 2 30 0 1022 212 54 123 chr4 138274384 138274420 -46014242 + MLT2D LTR ERVL 377 414 0 559 183 16 10 chr4 138275336 138275471 -46013191 - L1MB8 LINE L1 -210 5968 5833 403 245 9 9 chr4 138275470 138275583 -46013079 - L1MB5 LINE L1 -229 5945 5830 * 1464 248 70 25 chr4 138275592 138276067 -46012595 - L1MB5 LINE L1 -250 5924 5429 1389 184 68 0 chr4 138276329 138276607 -46012055 - AluJo SINE Alu -15 297 1 355 275 6 6 chr4 138276987 138277158 -46011504 + (TG)n Simple_repeat Simple_repeat 1 171 0 183 283 0 0 chr4 138277178 138277238 -46011424 + (TG)n Simple_repeat Simple_repeat 2 61 0 259 122 41 0 chr4 138277239 138277288 -46011374 + MER4-int LTR ERV1 1112 1162 -5436 831 216 0 0 chr4 138277293 138277627 -46011035 + (TG)n Simple_repeat Simple_repeat 1 334 0 185 317 61 12 chr4 138278333 138278415 -46010247 + MIR3 SINE MIR 91 176 -32 303 263 36 44 chr4 138278638 138278775 -46009887 + MIR SINE MIR 127 262 0 412 302 25 98 chr4 138278930 138279175 -46009487 - L2 LINE L2 -253 3060 2834 1852 119 9 41 chr4 138279175 138279494 -46009168 + AluSg SINE Alu 1 309 -1 1295 208 91 80 chr4 138286497 138287011 -46001651 + MLT2B1 LTR ERVL 1 520 0 895 312 136 5 chr4 138287011 138287579 -46001083 - L2 LINE L2 -1128 2186 1545 466 299 154 47 chr4 138287768 138288066 -46000596 - HAL1 LINE L1 -648 1859 1530 233 283 237 0 chr4 138288938 138289111 -45999551 + MIR SINE MIR 5 218 -44 187 400 29 0 chr4 138290523 138290628 -45998034 - MIR SINE MIR -34 228 121 575 258 35 92 chr4 138291712 138292080 -45996582 - MLT1B LTR MaLR -1 389 43 3113 164 18 0 chr4 138293635 138294427 -45994235 - L1P4 LINE L1 -659 5507 4703 460 298 144 22 chr4 138294460 138294641 -45994021 - MIR SINE MIR -52 210 8 221 235 25 25 chr4 138295283 138295402 -45993260 + (TTTG)n Simple_repeat Simple_repeat 2 120 0 458 277 71 7 chr4 138296385 138296540 -45992122 + MIR SINE MIR 49 213 -49 1086 206 102 48 chr4 138297249 138297691 -45990971 - MLT1D LTR MaLR -5 500 35 287 313 51 77 chr4 138298756 138298951 -45989711 - MIR SINE MIR -26 236 47 297 109 0 0 chr4 138299361 138299407 -45989255 + (TG)n Simple_repeat Simple_repeat 1 46 0 250 320 0 0 chr4 138299407 138299485 -45989177 + (CATG)n Simple_repeat Simple_repeat 1 78 0 24 32 0 0 chr4 138300850 138300881 -45987781 + AT_rich Low_complexity Low_complexity 1 31 0 2188 133 0 0 chr4 138301180 138301474 -45987188 + AluSx SINE Alu 1 294 -18 203 323 57 54 chr4 138301619 138301748 -45986914 - MIR SINE MIR -66 142 60 471 238 105 0 chr4 138305556 138305728 -45982934 + MLT1C LTR MaLR 278 467 0 544 252 77 67 chr4 138305728 138306026 -45982636 + MLT1C LTR MaLR 157 457 -10 704 296 88 56 chr4 138307306 138307764 -45980898 + L1M4c LINE L1 1022 1693 -1050 1829 130 4 4 chr4 138307764 138308017 -45980645 + AluSx SINE Alu 1 253 -59 763 198 12 0 chr4 138308986 138309148 -45979514 - L1MB3 LINE L1 -3 6180 6017 282 95 0 0 chr4 138311604 138311646 -45977016 + (TG)n Simple_repeat Simple_repeat 1 42 0 227 222 0 0 chr4 138311761 138311806 -45976856 + (TA)n Simple_repeat Simple_repeat 2 46 0 469 272 31 10 chr4 138311809 138312004 -45976658 - L1ME LINE L1 -349 5772 5574 304 247 0 14 chr4 138312705 138312851 -45975811 + (TG)n Simple_repeat Simple_repeat 1 144 0 439 236 6 6 chr4 138312883 138313061 -45975601 + (TG)n Simple_repeat Simple_repeat 2 179 0 215 250 0 9 chr4 138313075 138313187 -45975475 + (TG)n Simple_repeat Simple_repeat 2 112 0 483 182 0 19 chr4 138313212 138313366 -45975296 + (TG)n Simple_repeat Simple_repeat 2 152 0 582 186 0 22 chr4 138313393 138313576 -45975086 + (TG)n Simple_repeat Simple_repeat 1 179 0 246 276 71 10 chr4 138313641 138313739 -45974923 - HAL1 LINE L1 -1106 1401 1298 556 224 73 55 chr4 138313776 138313995 -45974667 + MLT1F1 LTR MaLR 69 291 -276 21 36 0 0 chr4 138314412 138314440 -45974222 + AT_rich Low_complexity Low_complexity 1 28 0 2564 59 7 0 chr4 138315447 138315751 -45972911 - AluY SINE Alu -5 306 1 1570 173 53 75 chr4 138315833 138316284 -45972378 - L1PA16 LINE L1 -9 6157 5717 1947 143 18 0 chr4 138318279 138318558 -45970104 - AluSx SINE Alu -28 284 1 580 389 57 25 chr4 138318732 138319481 -45969181 + L2 LINE L2 1890 2662 -652 217 217 0 0 chr4 138319875 138319921 -45968741 + (TG)n Simple_repeat Simple_repeat 2 47 0 237 192 19 0 chr4 138320567 138320619 -45968043 + (TA)n Simple_repeat Simple_repeat 2 54 0 606 90 40 0 chr4 138320624 138320724 -45967938 - MLT2A2 LTR ERVL 0 453 350 300 232 14 0 chr4 138321621 138321690 -45966972 + Tigger3(Golem) DNA MER2_type 14 83 -2946 547 202 0 44 chr4 138321819 138321886 -45966776 + Tigger3(Golem) DNA MER2_type 2920 2982 -47 2459 108 42 3 chr4 138321886 138322247 -45966415 - THE1C LTR MaLR 0 375 1 547 202 0 44 chr4 138322247 138322293 -45966369 + Tigger3(Golem) DNA MER2_type 2982 3028 -1 189 0 0 0 chr4 138322488 138322509 -45966153 + (T)n Simple_repeat Simple_repeat 1 21 0 2172 101 4 0 chr4 138323755 138324033 -45964629 + AluSx SINE Alu 18 296 -16 532 260 4 13 chr4 138325909 138326385 -45962277 + (CA)n Simple_repeat Simple_repeat 1 471 0 5081 186 29 17 chr4 138326496 138327454 -45961208 + ERVL LTR ERVL 2401 3374 -2390 2150 135 3 3 chr4 138327454 138327751 -45960911 - AluSx SINE Alu -15 297 1 5081 186 29 17 chr4 138327751 138327813 -45960849 + ERVL LTR ERVL 3374 3434 -2330 977 111 42 0 chr4 138327809 138327953 -45960709 + ERVL LTR ERVL 2323 2472 -3292 * 857 149 7 0 chr4 138327959 138328100 -45960562 - ERVL LTR ERVL -1216 4548 4407 * 4809 175 36 8 chr4 138328098 138329018 -45959644 + ERVL LTR ERVL 3439 4384 -1380 186 103 0 0 chr4 138330510 138330539 -45958123 + (TG)n Simple_repeat Simple_repeat 2 30 0 1484 201 80 3 chr4 138330564 138330903 -45957759 - MLT2D LTR ERVL -49 365 1 180 217 83 33 chr4 138331265 138331325 -45957337 + L2 LINE L2 1363 1425 -1889 226 274 181 14 chr4 138331499 138331714 -45956948 + L1ME3A LINE L1 5906 6156 -14 225 286 0 0 chr4 138331960 138332023 -45956639 + L1M4 LINE L1 3936 3998 -2148 * 248 309 64 43 chr4 138332003 138332191 -45956471 + L1P LINE L1 4053 4244 -1902 198 269 15 15 chr4 138335535 138335602 -45953060 + L2 LINE L2 2989 3055 -217 273 290 124 21 chr4 138338432 138338577 -45950085 + MIR SINE MIR 16 175 -87 1832 168 17 0 chr4 138338949 138339240 -45949422 + AluJo SINE Alu 1 296 -16 184 224 40 40 chr4 138339966 138340042 -45948620 - MIR3 SINE MIR -4 204 129 2230 141 72 3 chr4 138340066 138340441 -45948221 + MER57A LTR ERV1 3 403 0 365 172 9 103 chr4 138341164 138341280 -45947382 - L1M4 LINE L1 -1460 4686 4582 1399 235 20 73 chr4 138341409 138341946 -45946716 + L1M4 LINE L1 4765 5273 -873 2164 106 3 3 chr4 138342271 138342564 -45946098 + AluSx SINE Alu 3 295 -17 253 130 0 37 chr4 138343337 138343391 -45945271 - L1MB7 LINE L1 -14 6170 6119 918 158 144 77 chr4 138343400 138343494 -45945168 + AluJo SINE Alu 54 140 -172 2211 108 0 7 chr4 138343494 138343791 -45944871 + AluY SINE Alu 1 295 -16 918 158 144 77 chr4 138343791 138343918 -45944744 + AluJo SINE Alu 140 290 -22 432 0 0 0 chr4 138343919 138343967 -45944695 + (TG)n Simple_repeat Simple_repeat 2 49 0 560 206 59 95 chr4 138345236 138345575 -45943087 + MLT1C LTR MaLR 23 411 -56 219 382 0 29 chr4 138346405 138346473 -45942189 + A-rich Low_complexity Low_complexity 2 67 0 1047 26 0 0 chr4 138346917 138347034 -45941628 + AluY SINE Alu 184 300 -11 263 204 9 80 chr4 138347496 138347655 -45941007 - HsTC2 DNA Tc2 -32 1866 5 263 230 10 10 chr4 138347926 138348026 -45940636 + HAL1 LINE L1 94 193 -2314 321 327 45 5 chr4 138348083 138348282 -45940380 + HAL1 LINE L1 696 902 -1605 205 310 0 40 chr4 138348583 138348757 -45939905 + GA-rich Low_complexity Low_complexity 3 169 0 228 315 0 33 chr4 138348866 138349047 -45939615 + GA-rich Low_complexity Low_complexity 4 178 0 430 248 88 0 chr4 138349209 138349322 -45939340 + MER5B DNA MER1_type 51 173 -5 4661 57 10 12 chr4 138350060 138350652 -45938010 - LTR10C LTR ERV1 0 591 1 206 159 34 80 chr4 138351373 138351461 -45937201 + (CCCCG)n Simple_repeat Simple_repeat 1 84 0 1239 174 25 106 chr4 138352942 138353264 -45935398 + AluJo SINE Alu 1 296 -6 188 317 167 35 chr4 138354362 138354589 -45934073 - L2 LINE L2 -15 3257 3001 464 113 28 0 chr4 138354616 138354687 -45933975 + Charlie3 DNA MER1_type 102 174 -2536 1755 177 3 7 chr4 138354880 138355168 -45933494 + AluSx SINE Alu 2 288 -24 184 29 29 29 chr4 138355171 138355205 -45933457 + (TTAAA)n Simple_repeat Simple_repeat 3 36 0 2708 180 89 73 chr4 138355536 138356909 -45931753 - L1MB2 LINE L1 -2 6169 4778 2290 96 3 3 chr4 138359173 138359466 -45929196 - AluSx SINE Alu -19 293 1 21 0 0 0 chr4 138362153 138362174 -45926488 + AT_rich Low_complexity Low_complexity 1 21 0 194 138 69 0 chr4 138362748 138362806 -45925856 + GA-rich Low_complexity Low_complexity 3 64 0 2096 92 3 11 chr4 138363793 138364077 -45924585 - AluSx SINE Alu -7 305 24 463 353 47 35 chr4 138364141 138364458 -45924204 + L1ME LINE L1 5498 5818 -303 363 261 17 26 chr4 138364924 138365039 -45923623 + MIR SINE MIR 90 203 -59 2166 103 0 34 chr4 138365041 138365361 -45923301 + AluSg SINE Alu 1 309 -1 199 345 29 65 chr4 138365457 138365596 -45923066 - L2 LINE L2 0 3272 3139 1556 148 0 16 chr4 138366892 138367136 -45921526 + AluJb SINE Alu 58 297 -15 2118 132 13 0 chr4 138367817 138368121 -45920541 - AluSx SINE Alu -4 308 1 211 326 33 11 chr4 138368849 138368941 -45919721 - L2 LINE L2 -2 3270 3177 209 271 165 0 chr4 138369055 138369140 -45919522 + MIR SINE MIR 62 160 -102 1847 97 34 22 chr4 138369822 138370091 -45918571 - AluSx SINE Alu -6 306 35 180 312 13 39 chr4 138372667 138372744 -45915918 - MIR SINE MIR -70 192 118 592 249 62 21 chr4 138375017 138375210 -45913452 + MER3 DNA MER1_type 2 202 -7 247 180 60 90 chr4 138378100 138378267 -45910395 + (CCCCAG)n Simple_repeat Simple_repeat 4 165 0 211 219 83 53 chr4 138378612 138378781 -45909881 + (CCCCAG)n Simple_repeat Simple_repeat 4 177 0 307 193 82 53 chr4 138378830 138379001 -45909661 + (CCCCAG)n Simple_repeat Simple_repeat 4 179 0 796 245 28 80 chr4 138379420 138379717 -45908945 + L1M4 LINE L1 4728 5039 -1107 752 44 80 80 chr4 138379717 138379854 -45908808 - MER85 DNA T2_type -2 137 1 796 245 28 80 chr4 138379854 138379922 -45908740 + L1M4 LINE L1 5039 5071 -1075 1633 178 56 66 chr4 138379922 138380316 -45908346 + MLT1B LTR MaLR 1 390 0 796 245 28 80 chr4 138380316 138380373 -45908289 + L1M4 LINE L1 5071 5129 -1017 38 85 0 0 chr4 138380432 138380526 -45908136 + AT_rich Low_complexity Low_complexity 1 94 0 1904 149 0 36 chr4 138380687 138380995 -45907667 + AluJb SINE Alu 1 297 -15 5352 159 43 9 chr4 138381073 138382883 -45905779 + L1MA9 LINE L1 4446 6312 0 221 294 110 28 chr4 138383169 138383278 -45905384 + L2 LINE L2 3195 3312 -1 598 156 0 10 chr4 138383370 138383466 -45905196 + FLAM_C SINE Alu 36 130 -13 299 245 101 58 chr4 138383928 138384067 -45904595 - L2 LINE L2 -189 3083 2939 283 29 0 0 chr4 138384645 138384679 -45903983 - U2 snRNA snRNA -154 34 1 1575 104 37 29 chr4 138385059 138385300 -45903362 - AluSq SINE Alu -21 292 50 336 119 0 0 chr4 138388517 138388576 -45900086 + (TG)n Simple_repeat Simple_repeat 2 60 0 716 290 88 33 chr4 138390595 138391068 -45897594 - L2 LINE L2 -262 3051 2560 304 250 13 0 chr4 138391080 138391156 -45897506 + MLT2B2 LTR ERVL 365 441 -74 5236 220 72 23 chr4 138391157 138392439 -45896223 + ERVL-B2 LTR ERVL 18 1361 -4403 2821 211 20 7 chr4 138392466 138393017 -45895645 - ERVL LTR ERVL -3721 2043 1486 409 258 108 32 chr4 138400311 138400497 -45888165 + MIR SINE MIR 28 227 -35 1902 110 79 7 chr4 138400556 138400846 -45887816 + AluSx SINE Alu 2 312 0 713 73 0 9 chr4 138404542 138404652 -45884010 + (TTCC)n Simple_repeat Simple_repeat 4 112 0 2040 138 14 0 chr4 138404653 138404949 -45883713 - AluSx SINE Alu -12 300 1 24 0 0 0 chr4 138406817 138406841 -45881821 + AT_rich Low_complexity Low_complexity 1 24 0 2063 119 82 20 chr4 138407493 138407836 -45880826 + THE1B LTR MaLR 1 364 0 198 167 0 0 chr4 138409336 138409372 -45879290 + (TG)n Simple_repeat Simple_repeat 1 36 0 1743 161 111 40 chr4 138411331 138411728 -45876934 - MSTA LTR MaLR -2 426 2 414 262 94 37 chr4 138413380 138413571 -45875091 - L1ME3A LINE L1 -154 6016 5815 2068 86 7 7 chr4 138413583 138413861 -45874801 - AluSg SINE Alu -32 278 1 319 234 145 14 chr4 138413975 138414115 -45874547 - L1ME3A LINE L1 -390 5772 5596 533 248 99 25 chr4 138414127 138414329 -45874333 - L1ME2 LINE L1 -20 6144 5928 1138 249 27 24 chr4 138414393 138414722 -45873940 - L1ME2 LINE L1 -393 5771 5442 324 325 45 13 chr4 138415003 138415160 -45873502 + MIR SINE MIR 82 243 -19 944 144 53 21 chr4 138415868 138416055 -45872607 + L1MA7 LINE L1 6092 6284 -7 2086 96 0 21 chr4 138416233 138416513 -45872149 + AluSq SINE Alu 23 296 -17 320 230 100 0 chr4 138417029 138417129 -45871533 - L1ME4a LINE L1 -1 6120 6011 1865 123 78 39 chr4 138417233 138417592 -45871070 - THE1C LTR MaLR -2 373 1 35 83 0 0 chr4 138418201 138418285 -45870377 + AT_rich Low_complexity Low_complexity 1 84 0 235 298 124 8 chr4 138418361 138418482 -45870180 - MIR SINE MIR -15 247 113 183 246 70 18 chr4 138418564 138418621 -45870041 + MIR SINE MIR 14 73 -189 11230 164 68 31 chr4 138420764 138423217 -45865445 + L1MB3 LINE L1 29 2559 -3823 8454 223 26 30 chr4 138423199 138424527 -45864135 + L1MB3 LINE L1 3178 4509 -1910 * 204 40 0 0 chr4 138424527 138424552 -45864110 + (CA)n Simple_repeat Simple_repeat 2 26 0 8454 223 26 30 chr4 138424552 138426472 -45862190 + L1MB3 LINE L1 4509 6411 -8 2795 206 60 25 chr4 138426469 138427191 -45861471 + L1MB8 LINE L1 5418 6164 -14 * 245 319 11 21 chr4 138427838 138427932 -45860730 - MIR SINE MIR -104 158 66 3187 95 31 4 chr4 138429725 138429828 -45858834 + L1PB1 LINE L1 5679 5778 -373 381 43 0 0 chr4 138429828 138429875 -45858787 + (CA)n Simple_repeat Simple_repeat 1 47 0 3187 95 31 4 chr4 138429875 138430224 -45858438 + L1PB1 LINE L1 5778 6143 -8 287 276 60 0 chr4 138431276 138431392 -45857270 + Tigger8 DNA MER2_type 188 310 -356 271 258 47 74 chr4 138431433 138431623 -45857039 + Tigger8 DNA MER2_type 427 611 -55 8651 37 1 0 chr4 138432305 138433355 -45855307 - L1P LINE L1 -3054 3092 2042 206 219 0 0 chr4 138433789 138433830 -45854832 + (CA)n Simple_repeat Simple_repeat 2 42 0 1271 206 109 29 chr4 138433996 138434443 -45854219 - L1MD3 LINE L1 -187 7808 7138 34 65 0 0 chr4 138435110 138435172 -45853490 + AT_rich Low_complexity Low_complexity 1 62 0 35 54 0 0 chr4 138435541 138435597 -45853065 + AT_rich Low_complexity Low_complexity 1 56 0 1194 213 18 32 chr4 138435761 138436043 -45852619 + L1MA10 LINE L1 6050 6327 -7 804 277 79 24 chr4 138436060 138436352 -45852310 - MER69 DNA AcHobo -2217 309 2 777 253 110 23 chr4 138437049 138437349 -45851313 - LTR50 LTR ERVL -451 344 19 5736 116 54 19 chr4 138438326 138439239 -45849423 + Tigger1 DNA MER2_type 13 957 -1461 238 214 0 0 chr4 138439251 138439293 -45849369 + Tigger1 DNA MER2_type 2377 2418 0 2117 125 3 12 chr4 138439604 138439931 -45848731 - L1PB4 LINE L1 -3 6153 5830 1136 248 33 107 chr4 138442831 138443315 -45845347 + MLT1E LTR MaLR 5 452 -141 1500 119 8 18 chr4 138445189 138445543 -45843119 - L1P5 LINE L1 -682 5469 5115 573 81 81 0 chr4 138445537 138445624 -45843038 + L1P5 LINE L1 5464 5557 -594 * 1287 173 33 4 chr4 138445839 138446082 -45842580 - L1M2 LINE L1 -809 5503 5254 1721 122 92 13 chr4 138446086 138446389 -45842273 + MSTA LTR MaLR 1 327 -101 1374 141 11 3 chr4 138446401 138446618 -45842044 + MSTA LTR MaLR 189 428 0 1928 228 68 6 chr4 138446618 138446719 -45841943 - L1M2 LINE L1 -892 5254 5161 186 43 0 0 chr4 138446719 138446742 -45841920 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1928 228 68 6 chr4 138446742 138447157 -45841505 - L1M2 LINE L1 -985 5161 4706 205 88 29 0 chr4 138448276 138448310 -45840352 + (TCTA)n Simple_repeat Simple_repeat 3 37 0 2387 91 7 0 chr4 138450045 138450354 -45838308 + AluSq SINE Alu 1 311 -2 1799 152 7 3 chr4 138450354 138450637 -45838025 + AluSg SINE Alu 1 284 -26 225 0 0 0 chr4 138450642 138450667 -45837995 + (TTAAA)n Simple_repeat Simple_repeat 2 26 0 231 317 0 50 chr4 138451091 138451192 -45837470 + MIR SINE MIR 124 219 -43 222 263 35 0 chr4 138453079 138453136 -45835526 + MIR SINE MIR 92 150 -112 1014 255 94 70 chr4 138454706 138455204 -45833458 - LTR33 LTR ERVL 0 521 12 430 135 0 27 chr4 138455563 138455637 -45833025 + L1PA11 LINE L1 6102 6173 -1 445 275 27 20 chr4 138456133 138456282 -45832380 - MIR SINE MIR -48 214 65 2114 101 17 0 chr4 138456399 138456695 -45831967 - AluY SINE Alu -10 301 1 375 228 25 13 chr4 138459247 138459326 -45829336 + MER21B LTR ERV1 13 92 -771 180 135 0 0 chr4 138461060 138461097 -45827565 + (TTTTTG)n Simple_repeat Simple_repeat 4 40 0 339 25 0 0 chr4 138461594 138461634 -45827028 + (TG)n Simple_repeat Simple_repeat 2 41 0 402 357 6 12 chr4 138461933 138462101 -45826561 + L1MDa LINE L1 27 193 -6347 487 278 132 73 chr4 138462377 138462787 -45825875 + L1M2 LINE L1 953 1386 -5463 395 239 37 52 chr4 138463141 138463275 -45825387 + MIR SINE MIR 84 215 -47 2221 80 3 3 chr4 138463789 138464078 -45824584 + AluSq SINE Alu 24 312 -1 776 311 42 40 chr4 138464926 138465331 -45823331 - ERVL LTR ERVL -1190 4574 4169 281 363 71 0 chr4 138465728 138465910 -45822752 - ERVL LTR ERVL -2055 3709 3515 536 114 61 18 chr4 138466136 138466250 -45822412 - ERVL LTR ERVL -187 5577 5459 195 100 0 0 chr4 138466250 138466280 -45822382 + (TA)n Simple_repeat Simple_repeat 2 31 0 761 137 16 0 chr4 138466295 138466419 -45822243 + Ricksha DNA DNA 254 379 -1667 197 128 21 0 chr4 138466425 138466472 -45822190 + (CA)n Simple_repeat Simple_repeat 1 48 0 583 187 0 0 chr4 138466475 138466582 -45822080 - ERVL LTR ERVL -329 5435 5329 2653 154 31 7 chr4 138466591 138467039 -45821623 - ERVL LTR ERVL -400 5364 4906 2518 149 42 20 chr4 138467047 138467551 -45821111 - ERVL LTR ERVL -796 4968 4426 276 295 87 106 chr4 138468920 138469242 -45819420 - L2 LINE L2 -42 3230 2915 187 233 47 0 chr4 138470087 138470130 -45818532 + MIR SINE MIR 85 129 -133 211 146 36 18 chr4 138470280 138470335 -45818327 + GA-rich Low_complexity Low_complexity 4 59 0 26 0 0 0 chr4 138471856 138471882 -45816780 + AT_rich Low_complexity Low_complexity 1 26 0 24 53 0 0 chr4 138472157 138472195 -45816467 + AT_rich Low_complexity Low_complexity 1 38 0 2258 100 7 0 chr4 138472206 138472497 -45816165 + AluSx SINE Alu 1 293 -19 209 192 0 19 chr4 138472969 138473021 -45815641 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 2041 8 12 12 chr4 138473128 138473369 -45815293 + AluY SINE Alu 60 300 -11 452 295 160 10 chr4 138473373 138473573 -45815089 - MIR SINE MIR -27 235 6 22 35 0 0 chr4 138474189 138474218 -45814444 + AT_rich Low_complexity Low_complexity 1 29 0 433 292 52 69 chr4 138474840 138475073 -45813589 + L1ME1 LINE L1 5774 5968 -198 257 233 127 47 chr4 138475299 138475449 -45813213 - L1MC4a LINE L1 -1591 6217 6056 402 21 0 0 chr4 138475511 138475558 -45813104 + (CA)n Simple_repeat Simple_repeat 2 48 0 403 187 0 13 chr4 138477000 138477075 -45811587 - MER5B DNA MER1_type 0 178 105 252 295 53 79 chr4 138477137 138477327 -45811335 - MIR SINE MIR -76 186 2 397 168 106 44 chr4 138478663 138478776 -45809886 + MER63 DNA MER1_type 1 746 -316 284 218 0 0 chr4 138478774 138478829 -45809833 + MER63 DNA MER1_type 980 1034 -26 * 417 241 100 32 chr4 138479257 138479568 -45809094 - HAL1 LINE L1 -1216 1291 960 547 288 111 55 chr4 138480104 138480483 -45808179 + L1ME4a LINE L1 5445 5844 -277 583 206 132 25 chr4 138481097 138481382 -45807280 - MER33 DNA MER1_type -23 340 1 553 168 125 7 chr4 138481393 138481548 -45807114 + L1MA8 LINE L1 6126 6287 -4 561 210 93 47 chr4 138482826 138483040 -45805622 - MIR SINE MIR 0 262 39 976 162 122 9 chr4 138484558 138484787 -45803875 - MER33 DNA MER1_type -69 255 1 385 335 53 24 chr4 138485331 138485501 -45803161 + MIR3 SINE MIR 3 177 -31 2499 232 110 28 chr4 138486060 138487428 -45801234 + L1ME1 LINE L1 4663 6151 -15 196 200 0 0 chr4 138489739 138489779 -45798883 - L2 LINE L2 -9 3304 3265 21 71 0 0 chr4 138489780 138489822 -45798840 + AT_rich Low_complexity Low_complexity 1 42 0 270 282 20 24 chr4 138489921 138490094 -45798568 + MIR SINE MIR 23 247 -15 200 281 0 18 chr4 138490149 138490206 -45798456 + L2 LINE L2 3215 3270 -2 25 31 0 0 chr4 138490423 138490455 -45798207 + AT_rich Low_complexity Low_complexity 1 32 0 417 316 0 23 chr4 138490900 138491033 -45797629 + MIR SINE MIR 14 143 -119 1801 85 5 0 chr4 138591033 138591257 -45697405 - AluSp SINE Alu -88 225 1 253 132 0 0 chr4 138591257 138591295 -45697367 + Alu SINE Alu 237 274 -27 283 250 36 36 chr4 138591699 138591783 -45696879 + L3b LINE CR1 1193 1276 -307 572 247 112 6 chr4 138591797 138591967 -45696695 + MIR SINE MIR 75 262 0 1836 149 11 0 chr4 138592871 138593139 -45695523 - AluSx SINE Alu -41 271 1 343 195 132 0 chr4 138593158 138593249 -45695413 + MIR SINE MIR 98 203 -59 336 235 129 23 chr4 138593253 138593385 -45695277 - MLT1H1 LTR MaLR -9 558 413 452 325 103 13 chr4 138593469 138593703 -45694959 - MLT1H1 LTR MaLR -290 265 11 1389 273 119 93 chr4 138593716 138593871 -45694791 + Charlie7 DNA MER1_type 1521 1671 -941 1848 61 0 4 chr4 138593871 138594101 -45694561 - AluY SINE Alu 0 311 83 1389 273 119 93 chr4 138594101 138594746 -45693916 + Charlie7 DNA MER1_type 1671 2357 -255 2358 91 0 0 chr4 138594746 138595043 -45693619 + AluSx SINE Alu 5 301 -11 1389 273 119 93 chr4 138595043 138595293 -45693369 + Charlie7 DNA MER1_type 2357 2599 -13 2164 88 0 0 chr4 138595890 138596163 -45692499 + AluSg SINE Alu 38 310 0 1366 87 0 0 chr4 138595991 138596163 -45692499 + AluSg/x SINE Alu 139 344 0 307 0 0 0 chr4 138596163 138596197 -45692465 + (A)n Simple_repeat Simple_repeat 1 180 0 203 367 0 0 chr4 138596336 138596396 -45692266 + MIR SINE MIR 106 165 -97 593 115 0 48 chr4 138596674 138596778 -45691884 - AluSg SINE Alu -210 100 2 431 283 31 19 chr4 138596964 138597123 -45691539 - MLT1J LTR MaLR -38 473 313 558 219 61 73 chr4 138597556 138597802 -45690860 - MLT1J LTR MaLR -228 283 41 1021 144 17 44 chr4 138597807 138597988 -45690674 + MLT1B LTR MaLR 1 176 -214 2083 141 0 0 chr4 138597991 138598297 -45690365 + AluSx SINE Alu 1 306 -6 1419 152 0 25 chr4 138598300 138598438 -45690224 + AluJb SINE Alu 1 132 -180 2512 52 0 16 chr4 138598438 138598745 -45689917 + AluY SINE Alu 1 302 -9 1419 152 0 25 chr4 138598745 138598843 -45689819 + AluJb SINE Alu 132 231 -81 827 150 92 0 chr4 138598844 138598997 -45689665 + MLT1B LTR MaLR 301 467 0 2244 51 25 0 chr4 138599068 138599344 -45689318 + L1PA5 LINE L1 5866 6148 -6 8272 58 3 0 chr4 138599503 138600501 -45688161 - HERVK11 LTR ERVK -1596 6357 5357 * 13264 83 2 19 chr4 138600499 138602277 -45686385 - HERVK11 LTR ERVK -6205 1748 1 3241 66 7 35 chr4 138602277 138602729 -45685933 - MER11A LTR ERVK 0 1266 828 1214 41 41 12 chr4 138602723 138602893 -45685769 - MER11A LTR ERVK -851 415 241 * 258 214 18 0 chr4 138603064 138603120 -45685542 + MIR SINE MIR 109 165 -97 189 0 0 0 chr4 138603360 138603381 -45685281 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 417 269 57 11 chr4 138604185 138604360 -45684302 + L1MC4 LINE L1 7719 7901 -141 222 37 0 0 chr4 138604601 138604628 -45684034 + (CA)n Simple_repeat Simple_repeat 2 28 0 502 302 26 26 chr4 138604635 138604867 -45683795 - L2 LINE L2 -161 3152 2921 2031 267 55 31 chr4 138604872 138605197 -45683465 - L1ME LINE L1 -663 5501 5185 2414 90 0 0 chr4 138605197 138605497 -45683165 - AluSx SINE Alu -12 300 1 2031 267 55 31 chr4 138605497 138606158 -45682504 - L1ME LINE L1 -979 5185 4489 1659 175 33 26 chr4 138606158 138606461 -45682201 - AluJo SINE Alu -7 305 1 2031 267 55 31 chr4 138606461 138606496 -45682166 - L1ME LINE L1 -1675 4489 4456 1769 145 20 30 chr4 138606521 138606817 -45681845 - AluSx SINE Alu -19 293 1 772 298 45 10 chr4 138606818 138607130 -45681532 - L1ME LINE L1 -1825 4321 3999 263 154 0 19 chr4 138607235 138607287 -45681375 - MIR SINE MIR -61 201 151 432 114 57 0 chr4 138607764 138607852 -45680810 + CT-rich Low_complexity Low_complexity 2 94 0 640 408 72 18 chr4 138608016 138608582 -45680080 - L2 LINE L2 0 3313 2707 2105 134 0 3 chr4 138608582 138608881 -45679781 - AluJb SINE Alu -14 298 1 640 408 72 18 chr4 138608881 138608951 -45679711 - L2 LINE L2 -606 2707 2642 276 261 51 11 chr4 138609018 138609136 -45679526 - MLT1J LTR MaLR -313 173 18 247 158 0 0 chr4 138609128 138609166 -45679496 - MLT1L LTR MaLR -576 39 2 * 594 259 139 48 chr4 138609602 138609918 -45678744 + Charlie7 DNA MER1_type 12 356 -2256 267 296 0 11 chr4 138610187 138610275 -45678387 + MIR SINE MIR 176 262 0 2045 127 61 25 chr4 138610435 138610797 -45677865 - THE1C LTR MaLR 0 375 1 351 286 51 31 chr4 138610992 138611188 -45677474 - L1MC5 LINE L1 -35 7926 7727 240 265 23 68 chr4 138611448 138611580 -45677082 + MER5A DNA MER1_type 61 186 -3 219 69 0 0 chr4 138611915 138611944 -45676718 + (CA)n Simple_repeat Simple_repeat 2 30 0 818 80 0 0 chr4 138612216 138612316 -45676346 + AluS SINE Alu 3 102 -211 2025 52 4 12 chr4 138612417 138612665 -45675997 - AluSq SINE Alu -41 272 27 304 206 0 16 chr4 138612880 138612943 -45675719 + L2 LINE L2 2419 2480 -834 2143 199 83 7 chr4 138612945 138613393 -45675269 + MER74A LTR ERVL 1 482 -76 1651 128 64 0 chr4 138613393 138613642 -45675020 + MER39B LTR ERV1 1 265 -388 675 134 0 2 chr4 138613642 138613873 -45674789 + AluSx SINE Alu 16 293 -17 383 93 19 0 chr4 138613873 138613927 -45674735 + MER39B LTR ERV1 262 316 -337 1335 201 107 100 chr4 138613930 138614637 -45674025 + LTR8A LTR ERV1 1 719 -8 1874 134 55 15 chr4 138614647 138614955 -45673707 + MER39B LTR ERV1 318 619 -3 330 103 0 52 chr4 138614955 138615000 -45673662 + MER74A LTR ERVL 505 546 -12 395 198 8 74 chr4 138615103 138615224 -45673438 + L2 LINE L2 2637 2749 -565 2269 110 0 3 chr4 138615300 138615608 -45673054 - AluSx SINE Alu -5 307 1 436 265 164 42 chr4 138615689 138616074 -45672588 + L2 LINE L2 2863 3294 -19 1966 128 7 3 chr4 138616082 138616386 -45672276 + L1PB3 LINE L1 5844 6148 -6 207 0 0 0 chr4 138616419 138616442 -45672220 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 321 198 162 34 chr4 138616827 138616956 -45671706 - MIR SINE MIR -66 142 7 * 623 269 192 36 chr4 138616948 138617365 -45671297 - L2 LINE L2 0 3313 2832 186 203 149 27 chr4 138617413 138617487 -45671175 - MIR SINE MIR -166 96 14 2085 125 20 3 chr4 138617701 138618004 -45670658 + AluSx SINE Alu 2 309 -3 625 248 117 9 chr4 138618180 138618394 -45670268 + MIR SINE MIR 15 251 -11 21 57 0 0 chr4 138618448 138618483 -45670179 + AT_rich Low_complexity Low_complexity 1 35 0 329 303 20 0 chr4 138618543 138618642 -45670020 + MLT1L LTR MaLR 1 101 -514 815 229 112 30 chr4 138618720 138618991 -45669671 + MLT1L LTR MaLR 238 607 -8 282 56 0 0 chr4 138619171 138619207 -45669455 + (TCTA)n Simple_repeat Simple_repeat 2 37 0 2274 108 0 7 chr4 138620108 138620405 -45668257 + AluSx SINE Alu 1 295 -17 24 32 0 0 chr4 138622836 138622867 -45665795 + AT_rich Low_complexity Low_complexity 1 31 0 248 220 0 44 chr4 138623796 138623887 -45664775 + (CAGAGA)n Simple_repeat Simple_repeat 4 90 0 481 209 216 13 chr4 138626118 138626271 -45662391 + MER5A DNA MER1_type 6 189 0 2065 145 6 10 chr4 138626898 138627209 -45661453 - AluSx SINE Alu 0 312 3 2302 117 0 3 chr4 138627290 138627597 -45661065 + AluSx SINE Alu 1 306 -6 614 282 17 26 chr4 138627778 138628012 -45660650 + MIR SINE MIR 28 259 -3 1638 175 17 7 chr4 138628153 138628444 -45660218 + AluSx SINE Alu 1 294 -18 323 279 57 76 chr4 138628710 138628868 -45659794 + MIR SINE MIR 103 257 -5 2143 129 0 3 chr4 138629035 138629337 -45659325 + AluSp SINE Alu 1 301 -12 261 346 101 38 chr4 138630093 138630330 -45658332 + L3 LINE CR1 1134 1385 -192 2333 107 3 0 chr4 138630330 138630640 -45658022 + AluSx SINE Alu 1 311 -1 181 279 0 33 chr4 138630709 138630770 -45657892 + L3 LINE CR1 1419 1477 -100 1234 131 66 164 chr4 138630810 138631237 -45657425 - L1MB7 LINE L1 0 6184 5800 2247 105 0 3 chr4 138631336 138631632 -45657030 + AluSp SINE Alu 1 295 -18 2096 132 0 7 chr4 138632264 138632559 -45656103 - AluSx SINE Alu -19 293 1 198 103 0 0 chr4 138632581 138632610 -45656052 + (CAAAA)n Simple_repeat Simple_repeat 5 33 0 408 191 67 19 chr4 138633150 138633255 -45655407 - L2 LINE L2 -10 3303 3194 206 303 45 0 chr4 138633281 138633370 -45655292 + L2 LINE L2 3127 3219 -94 366 239 78 63 chr4 138633389 138633531 -45655131 + MIR SINE MIR 1 144 -118 244 331 21 28 chr4 138633886 138634031 -45654631 + Tigger8 DNA MER2_type 436 579 -87 1365 171 9 0 chr4 138635033 138635255 -45653407 + MER58A DNA MER1_type 1 224 0 2288 116 0 0 chr4 138635273 138635574 -45653088 + AluSq SINE Alu 1 301 -12 279 268 22 36 chr4 138635742 138635880 -45652782 + MLT1H LTR MaLR 50 185 -364 2403 110 0 0 chr4 138636870 138637180 -45651482 - AluSx SINE Alu -2 310 1 756 242 157 66 chr4 138638423 138638894 -45649768 - LTR33A LTR ERVL -3 520 7 2118 122 7 0 chr4 138638949 138639243 -45649419 - AluSx SINE Alu -16 296 1 1082 162 12 0 chr4 138640167 138640340 -45648322 - AluSg/x SINE Alu -4 308 134 1737 153 16 45 chr4 138640397 138640705 -45647957 - AluJb SINE Alu -13 299 1 288 276 112 0 chr4 138640732 138640866 -45647796 - MIR SINE MIR -61 201 53 1811 148 6 61 chr4 138641110 138641393 -45647269 - MER7A DNA MER2_type -2696 342 82 1855 171 0 19 chr4 138641393 138641709 -45646953 + AluJo SINE Alu 1 310 -2 1811 148 6 61 chr4 138641709 138641770 -45646892 - MER7A DNA MER2_type -2956 82 19 1070 145 75 5 chr4 138641770 138641970 -45646692 - L1MD3 LINE L1 -52 7943 7730 231 86 241 0 chr4 138642267 138642325 -45646337 + L1ME4a LINE L1 6048 6119 -2 507 326 0 17 chr4 138642610 138642791 -45645871 + MLT1H LTR MaLR 47 224 -325 192 77 0 0 chr4 138644267 138644293 -45644369 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 21 0 0 0 chr4 138644908 138644929 -45643733 + AT_rich Low_complexity Low_complexity 1 21 0 2007 127 3 14 chr4 138645932 138646224 -45642438 + AluSx SINE Alu 6 294 -18 1630 189 23 13 chr4 138646278 138646584 -45642078 + AluJb SINE Alu 1 309 -3 282 73 0 0 chr4 138648072 138648113 -45640549 + (TATG)n Simple_repeat Simple_repeat 4 44 0 23 0 0 0 chr4 138648411 138648434 -45640228 + AT_rich Low_complexity Low_complexity 1 23 0 1689 144 0 8 chr4 138648513 138648769 -45639893 - AluJb SINE Alu -19 293 40 238 221 65 39 chr4 138648782 138648859 -45639803 - L2 LINE L2 -16 3256 3178 804 120 62 78 chr4 138649341 138649533 -45639129 - MER53 DNA DNA 0 189 1 907 226 20 10 chr4 138650097 138650296 -45638366 + MER58A DNA MER1_type 24 224 0 2036 140 7 0 chr4 138650551 138650837 -45637825 + AluSx SINE Alu 5 292 -20 1808 126 4 0 chr4 138650839 138651085 -45637577 + AluSq SINE Alu 1 247 -66 22 35 0 0 chr4 138651271 138651300 -45637362 + AT_rich Low_complexity Low_complexity 1 29 0 1912 147 30 35 chr4 138652082 138652449 -45636213 + MLT1A1 LTR MaLR 1 365 0 187 130 22 22 chr4 138652455 138652501 -45636161 + (TAA)n Simple_repeat Simple_repeat 1 46 0 349 270 80 15 chr4 138652514 138652651 -45636011 - MIR SINE MIR -19 243 98 521 292 36 12 chr4 138652882 138653050 -45635612 + MIR SINE MIR 12 183 -79 245 343 74 0 chr4 138653191 138653299 -45635363 + L3 LINE CR1 1455 1570 -7 4098 107 18 11 chr4 138654333 138654961 -45633701 + L1MA6 LINE L1 5669 6300 0 24 0 0 0 chr4 138655145 138655169 -45633493 + AT_rich Low_complexity Low_complexity 1 24 0 2253 56 0 42 chr4 138656093 138656409 -45632253 + AluY SINE Alu 5 308 0 1865 145 3 14 chr4 138656426 138656709 -45631953 + AluJb SINE Alu 1 280 -32 405 0 0 0 chr4 138656709 138656754 -45631908 + (TAAAA)n Simple_repeat Simple_repeat 1 45 0 336 24 0 0 chr4 138657216 138657257 -45631405 + (TG)n Simple_repeat Simple_repeat 1 41 0 371 65 0 0 chr4 138657608 138657654 -45631008 - AluJo SINE Alu -9 293 248 848 182 88 21 chr4 138657654 138657846 -45630816 - AluJo SINE Alu -107 205 1 2270 117 0 3 chr4 138660767 138661075 -45627587 + AluSq SINE Alu 1 307 -6 339 250 0 0 chr4 138661931 138662031 -45626631 + CT-rich Low_complexity Low_complexity 1 100 0 1474 173 33 78 chr4 138662031 138662204 -45626458 - AluJo SINE Alu -19 293 139 1893 117 0 8 chr4 138662204 138662461 -45626201 - AluSq SINE Alu -21 292 38 1474 173 33 78 chr4 138662461 138662594 -45626068 - AluJo SINE Alu -173 139 1 766 105 81 16 chr4 138664157 138664281 -45624381 + FLAM_C SINE Alu 1 132 -1 27 39 0 19 chr4 138664401 138664441 -45624221 + AT_rich Low_complexity Low_complexity 1 41 -10 345 111 19 0 chr4 138664441 138664495 -45624167 - L1PA16 LINE L1 -9 6157 6103 27 39 0 19 chr4 138664495 138664506 -45624156 + AT_rich Low_complexity Low_complexity 41 51 0 574 259 30 0 chr4 138665981 138666147 -45622515 + MIR SINE MIR 77 247 -15 486 293 0 8 chr4 138666501 138666634 -45622028 - MER94 DNA DNA -2 132 1 25 0 0 0 chr4 138668034 138668059 -45620603 + GC_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr4 138668417 138668443 -45620219 + GC_rich Low_complexity Low_complexity 1 26 0 204 40 0 0 chr4 138668656 138668681 -45619981 + (GGA)n Simple_repeat Simple_repeat 1 25 0 218 203 31 47 chr4 138672653 138672717 -45615945 + MIR3 SINE MIR 116 178 -30 237 224 0 30 chr4 138673001 138673068 -45615594 + G-rich Low_complexity Low_complexity 2 66 0 2045 125 0 38 chr4 138673630 138673950 -45614712 + AluSx SINE Alu 1 308 -4 198 0 0 0 chr4 138673954 138673976 -45614686 + (CA)n Simple_repeat Simple_repeat 1 22 0 316 242 156 8 chr4 138676388 138676516 -45612146 - MIR SINE MIR -65 197 51 2889 110 21 0 chr4 138676668 138677087 -45611575 - MSTA LTR MaLR 0 428 1 2065 115 16 10 chr4 138677542 138677846 -45610816 - AluSq SINE Alu -7 306 1 1962 108 29 38 chr4 138678056 138678150 -45610512 + L1MA5 LINE L1 5957 6050 -250 2240 127 0 0 chr4 138678150 138678449 -45610213 + AluSx SINE Alu 1 299 -13 1962 108 29 38 chr4 138678449 138678696 -45609966 + L1MA5 LINE L1 6050 6295 -5 2179 121 3 0 chr4 138678930 138679228 -45609434 + AluSx SINE Alu 1 299 -13 199 365 52 10 chr4 138679236 138679332 -45609330 + MIR SINE MIR 42 141 -67 336 200 29 57 chr4 138679713 138679818 -45608844 + MIR SINE MIR 91 192 -70 881 210 113 118 chr4 138679880 138680108 -45608554 - MLT1C LTR MaLR 0 467 240 2213 110 7 3 chr4 138680108 138680409 -45608253 - AluSx SINE Alu -1 311 10 881 210 113 118 chr4 138680409 138680552 -45608110 - MLT1C LTR MaLR -227 240 98 830 163 0 27 chr4 138680570 138680754 -45607908 + CT-rich Low_complexity Low_complexity 2 180 0 1033 178 159 0 chr4 138680754 138680968 -45607694 - AluJo SINE Alu -64 248 1 347 135 278 1 chr4 138680968 138681044 -45607618 - MLT1C LTR MaLR -295 95 1 391 199 169 52 chr4 138681453 138681589 -45607073 + MIR SINE MIR 30 181 -81 2184 111 0 0 chr4 138682209 138682489 -45606173 - AluSx SINE Alu -30 282 3 194 241 74 0 chr4 138683036 138683090 -45605572 + MIR3 SINE MIR 97 154 -54 648 161 173 48 chr4 138684417 138684516 -45604146 - MER5A DNA MER1_type 0 189 104 2216 157 8 14 chr4 138684516 138684879 -45603783 - MLT1A1 LTR MaLR 0 365 5 648 161 173 48 chr4 138684879 138684947 -45603715 - MER5A DNA MER1_type -85 104 1 2291 120 0 7 chr4 138684952 138685261 -45603401 - AluSx SINE Alu -5 307 1 21 36 0 0 chr4 138685493 138685521 -45603141 + AT_rich Low_complexity Low_complexity 1 28 0 301 243 81 18 chr4 138685807 138685918 -45602744 - L1M4 LINE L1 -2688 3458 3341 1764 98 42 30 chr4 138685985 138686249 -45602413 - LTR8 LTR ERV1 0 691 425 909 208 57 70 chr4 138686341 138686726 -45601936 - LTR40b LTR ERVL -4 458 3 189 0 0 0 chr4 138686726 138686747 -45601915 + (CAAT)n Simple_repeat Simple_repeat 1 21 0 570 123 22 29 chr4 138686759 138686897 -45601765 + CT-rich Low_complexity Low_complexity 2 138 0 1122 181 36 14 chr4 138686998 138687398 -45601264 - AluJo SINE Alu 0 312 77 334 268 120 60 chr4 138687399 138687649 -45601013 - L1M4 LINE L1 -2979 3167 2903 2010 153 0 0 chr4 138687668 138687969 -45600693 - AluSx SINE Alu -11 301 1 197 333 109 27 chr4 138688145 138688292 -45600370 + MIR3 SINE MIR 30 188 -20 2400 117 34 0 chr4 138688643 138688995 -45599667 - THE1B LTR MaLR 0 364 1 3292 166 19 71 chr4 138689047 138689775 -45598887 - LTR8 LTR ERV1 0 691 2 551 313 47 9 chr4 138689952 138690163 -45598499 - MIR SINE MIR -27 235 17 234 194 250 14 chr4 138690160 138690232 -45598430 + MER91B DNA MER1_type 41 129 -61 * 406 237 86 0 chr4 138690250 138690343 -45598319 + MER91B DNA MER1_type 90 190 0 2336 159 12 12 chr4 138690379 138690397 -45598265 - MER57A LTR ERV1 0 403 386 2247 118 3 3 chr4 138690397 138690710 -45597952 + AluSq SINE Alu 1 313 0 2336 159 12 12 chr4 138690710 138691093 -45597569 - MER57A LTR ERV1 -16 387 2 240 143 0 0 chr4 138691266 138691308 -45597354 + (T)n Simple_repeat Simple_repeat 1 42 0 2375 115 0 0 chr4 138691310 138691622 -45597040 - AluSx SINE Alu 0 312 1 2393 82 7 3 chr4 138692549 138692853 -45595809 + AluSg SINE Alu 1 305 -5 455 204 133 0 chr4 138693516 138693629 -45595033 - L2 LINE L2 0 3313 3186 600 143 86 4 chr4 138694848 138694980 -45593682 - L1ME2 LINE L1 0 6178 6037 328 310 111 23 chr4 138696063 138696234 -45592428 - MIR SINE MIR -56 206 21 2185 117 7 0 chr4 138696235 138696366 -45592296 + AluSx SINE Alu 1 130 -182 234 0 0 0 chr4 138696366 138696392 -45592270 + (TA)n Simple_repeat Simple_repeat 2 27 0 2185 117 7 0 chr4 138696392 138696551 -45592111 + AluSx SINE Alu 130 293 -19 337 235 49 0 chr4 138696575 138696656 -45592006 + Charlie2 DNA MER1_type 1 85 -2697 878 246 59 44 chr4 138696662 138696971 -45591691 + MLT1G1 LTR MaLR 18 300 -290 1622 198 57 13 chr4 138696971 138697203 -45591459 - MER68 LTR ERV1 0 562 342 1995 135 75 26 chr4 138697203 138697550 -45591112 - THE1B LTR MaLR 0 364 1 1622 198 57 13 chr4 138697550 138697805 -45590857 - MER68 LTR ERV1 -220 342 1 766 220 73 36 chr4 138697833 138698058 -45590604 + MLT1G1 LTR MaLR 269 586 -9 420 207 24 0 chr4 138698226 138698308 -45590354 - MER58 DNA MER1_type 0 2420 132 2588 53 0 3 chr4 138698362 138698662 -45590000 + AluY SINE Alu 1 299 -12 384 214 48 58 chr4 138698927 138699030 -45589632 - MER58 DNA MER1_type -113 102 1 229 170 21 0 chr4 138699099 138699146 -45589516 + Charlie2 DNA MER1_type 276 323 -2459 2873 190 51 56 chr4 138699151 138699903 -45588759 + Charlie2 DNA MER1_type 1857 2606 -256 2343 95 0 0 chr4 138699903 138700198 -45588464 - AluSq SINE Alu -18 295 1 2873 190 51 56 chr4 138700198 138700322 -45588340 + Charlie2 DNA MER1_type 2606 2729 -133 950 170 70 0 chr4 138700329 138700500 -45588162 + MER5A DNA MER1_type 7 189 0 348 145 31 176 chr4 138700503 138700662 -45588000 + Charlie2 DNA MER1_type 2726 2861 -1 228 256 93 16 chr4 138700770 138700899 -45587763 - L2 LINE L2 -270 3002 2864 737 150 53 0 chr4 138702804 138702917 -45585745 + FLAM_A SINE Alu 5 123 -10 562 248 107 33 chr4 138703009 138703190 -45585472 + MIR SINE MIR 3 208 -54 225 0 0 0 chr4 138703190 138703215 -45585447 + (TG)n Simple_repeat Simple_repeat 1 25 0 562 248 107 33 chr4 138703215 138703275 -45585387 + MIR SINE MIR 208 262 0 1300 161 0 0 chr4 138703679 138703903 -45584759 + L1MA6 LINE L1 6073 6296 -4 1477 243 82 2 chr4 138705450 138705899 -45582763 + L2 LINE L2 1976 2460 -854 291 258 34 0 chr4 138705900 138705989 -45582673 + MLT1C LTR MaLR 1 92 -375 2086 124 10 3 chr4 138705989 138706279 -45582383 - AluSx SINE Alu -20 292 1 1087 178 144 59 chr4 138706401 138706621 -45582041 + MLT1C LTR MaLR 82 345 -122 1612 123 47 123 chr4 138706621 138706986 -45581676 + MER1B DNA MER1_type 1 337 0 1087 178 144 59 chr4 138706986 138707120 -45581542 + MLT1C LTR MaLR 345 466 -1 1608 243 69 39 chr4 138707121 138707429 -45581233 + L2 LINE L2 2457 2754 -559 1903 122 3 44 chr4 138707429 138707725 -45580937 + AluSx SINE Alu 1 284 -28 1608 243 69 39 chr4 138707725 138708248 -45580414 + L2 LINE L2 2754 3311 -2 1882 134 42 39 chr4 138708406 138708449 -45580213 - L1MB2 LINE L1 -7 6164 6123 2312 95 3 7 chr4 138708449 138708754 -45579908 - AluSx SINE Alu -8 304 1 1882 134 42 39 chr4 138708754 138709069 -45579593 - L1MB2 LINE L1 -48 6123 5805 571 178 30 14 chr4 138709651 138709669 -45578993 + (TA)n Simple_repeat Simple_repeat 1 17 -746 2082 106 0 27 chr4 138709669 138709961 -45578701 - AluSx SINE Alu -23 289 6 571 178 30 14 chr4 138709961 138710403 -45578259 + (TA)n Simple_repeat Simple_repeat 17 763 0 833 291 17 0 chr4 138710403 138710633 -45578029 - MIR SINE MIR -26 236 3 436 219 109 0 chr4 138712054 138712173 -45576489 - L2 LINE L2 0 3313 3182 664 269 97 73 chr4 138712276 138712584 -45576078 - MLT1C LTR MaLR 0 467 145 1396 178 96 61 chr4 138712584 138712961 -45575701 + MLT1B LTR MaLR 1 390 0 664 269 97 73 chr4 138712961 138713065 -45575597 - MLT1C LTR MaLR -322 145 45 2266 118 3 0 chr4 138713077 138713383 -45575279 - AluSx SINE Alu -3 309 3 348 309 108 51 chr4 138713440 138714275 -45574387 - L2 LINE L2 -224 3048 2128 364 224 0 13 chr4 138715132 138715208 -45573454 - L1 LINE L1 -1980 4166 4092 195 129 0 0 chr4 138715621 138715652 -45573010 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 301 250 59 82 chr4 138715926 138716146 -45572516 - L3b LINE CR1 -223 1360 1146 2136 122 10 3 chr4 138716190 138716493 -45572169 + AluSq SINE Alu 1 305 -8 28 0 0 0 chr4 138716597 138716625 -45572037 + AT_rich Low_complexity Low_complexity 1 28 0 570 306 39 9 chr4 138716774 138717003 -45571659 - MIR SINE MIR -9 253 18 291 28 0 0 chr4 138717039 138717075 -45571587 + (TG)n Simple_repeat Simple_repeat 2 37 0 1109 204 27 82 chr4 138717188 138717401 -45571261 - L1M4 LINE L1 -1740 4406 4216 2319 97 10 0 chr4 138717401 138717709 -45570953 - AluSq SINE Alu -2 311 1 1109 204 27 82 chr4 138717709 138717823 -45570839 - L1M4 LINE L1 -1930 4216 4097 457 273 58 41 chr4 138717931 138718103 -45570559 - MLT1J LTR MaLR -310 201 27 1216 183 13 35 chr4 138718391 138718458 -45570204 - MER58A DNA MER1_type -2196 224 157 1748 184 194 5 chr4 138718458 138718881 -45569781 + MLT1D LTR MaLR 1 503 -2 1216 183 13 35 chr4 138718881 138719042 -45569620 - MER58A DNA MER1_type -2263 157 1 1987 154 3 0 chr4 138719095 138719393 -45569269 - AluJb SINE Alu -13 299 1 295 81 0 0 chr4 138719899 138719936 -45568726 + tRNA-Asp-GAC tRNA tRNA 1 37 -38 1866 155 3 23 chr4 138719950 138720254 -45568408 + AluJo SINE Alu 1 298 -14 354 269 233 46 chr4 138720801 138721020 -45567642 - MIR SINE MIR 0 262 3 234 0 0 0 chr4 138721055 138721081 -45567581 + (CAAT)n Simple_repeat Simple_repeat 1 26 0 257 275 0 14 chr4 138721098 138721167 -45567495 - L2 LINE L2 -60 3253 3186 909 118 0 22 chr4 138721739 138721875 -45566787 + FLAM_C SINE Alu 1 133 0 2247 102 0 13 chr4 138722145 138722448 -45566214 + AluSc SINE Alu 1 299 -10 246 230 292 19 chr4 138722794 138722955 -45565707 - MER112 DNA MER1_type -49 211 7 536 228 62 14 chr4 138723126 138723271 -45565391 + MIR SINE MIR 111 262 0 764 231 6 23 chr4 138723458 138723631 -45565031 + FAM SINE Alu 1 41 -8 1370 211 20 88 chr4 138723679 138723939 -45564723 - MLT1A1 LTR MaLR -44 321 88 2100 133 3 0 chr4 138723939 138724233 -45564429 - AluSx SINE Alu -17 295 1 1370 211 20 88 chr4 138724233 138724314 -45564348 - MLT1A1 LTR MaLR -277 88 3 2381 98 0 3 chr4 138724426 138724732 -45563930 + AluSq SINE Alu 1 305 -8 596 250 139 26 chr4 138725780 138726210 -45562452 + MLT1L LTR MaLR 90 614 -1 280 356 29 0 chr4 138726316 138726420 -45562242 + MIR3 SINE MIR 14 120 -88 2080 128 10 0 chr4 138726420 138726549 -45562113 + AluSp SINE Alu 1 127 -186 357 24 0 0 chr4 138726549 138726591 -45562071 + (TAA)n Simple_repeat Simple_repeat 2 43 0 2080 128 10 0 chr4 138726591 138726758 -45561904 + AluSp SINE Alu 127 300 -13 2058 109 33 0 chr4 138726969 138727264 -45561398 - AluSx SINE Alu 0 304 1 616 214 99 35 chr4 138727271 138727472 -45561190 - MIR SINE MIR -44 218 5 196 224 82 0 chr4 138727457 138727506 -45561156 + L2 LINE L2 3220 3272 0 * 1502 138 55 58 chr4 138728592 138728917 -45559745 - MER33 DNA MER1_type 0 324 1 24 0 0 0 chr4 138729028 138729052 -45559610 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr4 138729083 138729107 -45559555 + AT_rich Low_complexity Low_complexity 1 24 0 2149 122 0 16 chr4 138729221 138729524 -45559138 - AluSg SINE Alu -12 298 1 216 0 0 0 chr4 138730487 138730511 -45558151 + (T)n Simple_repeat Simple_repeat 1 24 0 525 253 79 28 chr4 138730761 138730865 -45557797 + MER5A DNA MER1_type 3 121 -68 2103 116 3 23 chr4 138730865 138731167 -45557495 - AluSx SINE Alu -12 300 5 525 253 79 28 chr4 138731167 138731240 -45557422 + MER5A DNA MER1_type 121 189 0 1507 161 97 82 chr4 138731311 138731849 -45556813 - MER67C LTR ERV1 -2 512 2 4343 111 9 16 chr4 138733049 138733715 -45554947 + L1MA4 LINE L1 5378 6038 -262 801 185 8 0 chr4 138733719 138733849 -45554813 + FLAM_C SINE Alu 1 131 -12 1387 139 11 45 chr4 138733855 138733886 -45554776 + L1MA4 LINE L1 6039 6070 -230 2282 98 0 3 chr4 138733886 138734181 -45554481 + AluSx SINE Alu 1 294 -18 1387 139 11 45 chr4 138734181 138734415 -45554247 + L1MA4 LINE L1 6070 6295 -5 1153 53 0 77 chr4 138735988 138736023 -45552639 - L1PA3 LINE L1 -1 6154 6118 181 54 0 54 chr4 138736023 138736060 -45552602 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 1153 53 0 77 chr4 138736060 138736193 -45552469 - L1PA3 LINE L1 -37 6118 5999 1035 167 63 63 chr4 138736206 138736445 -45552217 - MER8 DNA MER2_type 0 239 1 216 0 0 0 chr4 138736448 138736472 -45552190 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1507 163 100 76 chr4 138736485 138736866 -45551796 - MLT1B LTR MaLR 0 390 1 1905 193 25 49 chr4 138737802 138738368 -45550294 - LTR26E LTR ERV1 0 610 1 1017 311 99 10 chr4 138738767 138739281 -45549381 + L2 LINE L2 687 1246 -2068 503 219 0 0 chr4 138739281 138739377 -45549285 - LTR33A LTR ERVL 0 523 428 3014 57 35 10 chr4 138739378 138739783 -45548879 + MER11A LTR ERVK 1 415 -851 * 3241 66 7 35 chr4 138739777 138740229 -45548433 + MER11A LTR ERVK 828 1266 0 8506 87 2 29 chr4 138740229 138741417 -45547245 + HERVK11 LTR ERVK 1 1157 -6796 1333 107 0 11 chr4 138741517 138741695 -45546967 - AluSg SINE Alu -125 185 10 821 154 0 22 chr4 138741728 138741864 -45546798 + FLAM_C SINE Alu 1 133 0 291 272 19 19 chr4 138741976 138742079 -45546583 + L1ME4a LINE L1 5952 6054 -67 274 309 109 6 chr4 138742155 138742320 -45546342 + MIR SINE MIR 73 254 -8 383 115 0 0 chr4 138742453 138742505 -45546157 + Alu SINE Alu 2 53 -247 479 299 127 42 chr4 138742548 138742903 -45545759 + L2 LINE L2 2921 3305 -8 2203 98 0 0 chr4 138743087 138743402 -45545260 + AluSx SINE Alu 5 319 0 191 61 30 0 chr4 138743469 138743502 -45545160 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2265 114 7 0 chr4 138744936 138745244 -45543418 - AluSx SINE Alu -2 310 1 9911 84 1 22 chr4 138745404 138746741 -45541921 + HERVK11 LTR ERVK 440 1748 -6205 * 21154 67 2 3 chr4 138746739 138748873 -45539789 + HERVK11 LTR ERVK 5357 7488 -465 2403 83 3 3 chr4 138748873 138749174 -45539488 + AluY SINE Alu 1 301 -10 21154 67 2 3 chr4 138749174 138749640 -45539022 + HERVK11 LTR ERVK 7488 7953 0 4726 74 14 30 chr4 138749640 138750793 -45537869 + MER11A LTR ERVK 1 1266 0 804 276 149 36 chr4 138750793 138751191 -45537471 - LTR33A LTR ERVL -73 450 2 186 143 0 0 chr4 138751285 138751320 -45537342 + (CA)n Simple_repeat Simple_repeat 2 36 0 1937 241 65 43 chr4 138751341 138751946 -45536716 - MLT2F LTR ERVL -43 620 3 775 194 7 7 chr4 138752303 138752466 -45536196 - AluJb SINE Alu 0 312 152 807 136 0 68 chr4 138752852 138752999 -45535663 - AluJb SINE Alu -175 137 1 1631 250 79 19 chr4 138752999 138753392 -45535270 - ERVL LTR ERVL -417 5347 4874 2291 74 0 26 chr4 138753392 138753704 -45534958 + AluY SINE Alu 1 304 -7 1631 250 79 19 chr4 138753704 138753959 -45534703 - ERVL LTR ERVL -890 4874 4636 424 146 61 0 chr4 138753960 138754042 -45534620 + L1MB1 LINE L1 6069 6155 -13 332 182 18 0 chr4 138754079 138754134 -45534528 - ERVL LTR ERVL -1117 4647 4592 * 909 243 0 19 chr4 138754133 138754343 -45534319 + ERVL LTR ERVL 4322 4527 -1237 1886 156 71 75 chr4 138754764 138755201 -45533461 - MER4B LTR ERV1 -171 439 5 514 235 109 0 chr4 138755204 138755387 -45533275 - MER113 DNA MER1_type? -210 311 109 426 320 137 5 chr4 138756715 138756912 -45531750 - L3b LINE CR1 -224 1359 1137 21 57 0 0 chr4 138757171 138757206 -45531456 + AT_rich Low_complexity Low_complexity 1 35 0 2232 99 3 3 chr4 138757482 138757786 -45530876 + AluSx SINE Alu 1 304 -8 266 239 56 99 chr4 138758667 138758794 -45529868 + Charlie7 DNA MER1_type 1 123 -2489 2120 110 0 0 chr4 138758794 138759084 -45529578 - AluSx SINE Alu -22 290 1 266 239 56 99 chr4 138759084 138759098 -45529564 + Charlie7 DNA MER1_type 123 136 -2476 754 153 8 0 chr4 138759103 138759221 -45529441 - FLAM_C SINE Alu -12 131 13 301 256 29 3 chr4 138759301 138759410 -45529252 - MLT1J1 LTR MaLR -20 429 317 386 271 0 10 chr4 138759755 138759851 -45528811 - MER81 DNA DNA -7 107 13 297 0 0 0 chr4 138760460 138760493 -45528169 + (ATG)n Simple_repeat Simple_repeat 2 34 0 2271 67 0 7 chr4 138760507 138760792 -45527870 - AluY SINE Alu -27 284 2 2359 44 41 0 chr4 138761929 138762222 -45526440 + AluY SINE Alu 1 305 -6 285 218 18 0 chr4 138762548 138762603 -45526059 - ERVL LTR ERVL -1117 4647 4592 * 891 249 0 15 chr4 138762602 138762803 -45525859 + ERVL LTR ERVL 4322 4519 -1245 327 345 125 18 chr4 138763110 138763391 -45525271 + L2 LINE L2 2354 2664 -650 382 367 83 35 chr4 138763477 138763872 -45524790 + L2 LINE L2 2852 3265 -7 298 302 55 50 chr4 138763882 138764064 -45524598 + L2 LINE L2 1916 2098 -1216 453 209 27 0 chr4 138764071 138764181 -45524481 - L1MA4A LINE L1 -2 6301 6189 3231 122 6 0 chr4 138764181 138764657 -45524005 - L1PB4 LINE L1 -98 6058 5580 1931 116 27 10 chr4 138764663 138764964 -45523698 - AluSx SINE Alu -6 306 1 312 159 32 0 chr4 138764981 138765044 -45523618 - L1MB8 LINE L1 -21 6157 6093 26 50 0 0 chr4 138765046 138765086 -45523576 + AT_rich Low_complexity Low_complexity 1 40 0 4272 153 36 25 chr4 138765090 138765501 -45523161 - L1MB4 LINE L1 -6 6174 5750 2028 110 7 13 chr4 138765501 138765802 -45522860 - AluSx SINE Alu -13 299 1 4272 153 36 25 chr4 138765802 138766176 -45522486 - L1MB4 LINE L1 -430 5750 5381 552 164 10 48 chr4 138766176 138766280 -45522382 + MLT1A1 LTR MaLR 1 100 -265 * 903 195 13 0 chr4 138766279 138766438 -45522224 + MLT1A1 LTR MaLR 204 364 -1 687 176 28 88 chr4 138766438 138766552 -45522110 - L1MB4 LINE L1 -773 5373 5272 1606 143 98 11 chr4 138766552 138766839 -45521823 - AluJb SINE Alu 0 312 1 687 176 28 88 chr4 138766839 138766906 -45521756 - L1MB4 LINE L1 -874 5272 5203 546 290 190 44 chr4 138766939 138767754 -45520908 + L2 LINE L2 2147 3083 -189 2108 114 0 0 chr4 138767825 138768114 -45520548 + AluSx SINE Alu 1 289 -23 188 250 0 0 chr4 138768163 138768199 -45520463 + L2 LINE L2 3194 3229 -43 313 180 0 0 chr4 138768226 138768276 -45520386 - Tigger1 DNA MER2_type -5 2413 2364 3178 239 84 36 chr4 138768393 138769252 -45519410 - HAL1 LINE L1 -295 2212 1271 1589 182 7 3 chr4 138769252 138769548 -45519114 - AluJb SINE Alu -15 297 1 3178 239 84 36 chr4 138769548 138769962 -45518700 - HAL1 LINE L1 -1236 1271 878 2461 237 76 100 chr4 138769971 138770139 -45518523 - L2 LINE L2 -2 3311 3140 1424 195 7 23 chr4 138770139 138770442 -45518220 + AluJo SINE Alu 1 298 -14 2461 237 76 100 chr4 138770442 138770975 -45517687 - L2 LINE L2 -173 3140 2596 2350 136 11 97 chr4 138770975 138771440 -45517222 - MER61B LTR ERV1 0 425 1 2461 237 76 100 chr4 138771440 138771936 -45516726 - L2 LINE L2 -717 2596 2158 2082 108 75 69 chr4 138771936 138772143 -45516519 - THE1B LTR MaLR 0 364 153 2012 134 3 6 chr4 138772143 138772456 -45516206 - AluSx SINE Alu 0 312 1 2082 108 75 69 chr4 138772456 138772610 -45516052 - THE1B LTR MaLR -211 153 1 2461 237 76 100 chr4 138772610 138772701 -45515961 - L2 LINE L2 -1155 2158 2066 1058 269 110 96 chr4 138772701 138773421 -45515241 - HAL1 LINE L1 -1628 879 143 1001 110 0 182 chr4 138773421 138773657 -45515005 - 7SK RNA RNA 0 193 1 1058 269 110 96 chr4 138773657 138773803 -45514859 - HAL1 LINE L1 -2364 143 1 355 58 0 241 chr4 138773846 138773900 -45514762 - MER4E LTR ERV1 0 766 739 2102 112 0 0 chr4 138773900 138774194 -45514468 - AluSx SINE Alu -18 294 1 355 58 0 241 chr4 138774194 138774226 -45514436 - MER4E LTR ERV1 -27 739 701 2129 75 10 17 chr4 138774441 138774736 -45513926 - AluSc SINE Alu -16 293 1 198 0 0 0 chr4 138775097 138775119 -45513543 + (TC)n Simple_repeat Simple_repeat 2 23 0 1013 152 15 99 chr4 138775172 138775435 -45513227 - AluJo SINE Alu -16 296 56 21 0 0 0 chr4 138775983 138776004 -45512658 + AT_rich Low_complexity Low_complexity 1 21 0 1672 141 16 117 chr4 138776016 138776132 -45512530 + MLT1B LTR MaLR 1 127 -263 1778 157 0 3 chr4 138776132 138776431 -45512231 + AluJo SINE Alu 1 298 -14 1672 141 16 117 chr4 138776431 138776683 -45511979 + MLT1B LTR MaLR 127 332 -58 326 179 0 0 chr4 138776759 138776815 -45511847 + MLT1B LTR MaLR 335 390 0 298 95 54 14 chr4 138776901 138776975 -45511687 + (TG)n Simple_repeat Simple_repeat 2 78 0 520 203 156 36 chr4 138777493 138777685 -45510977 + MIR SINE MIR 8 222 -40 226 252 84 75 chr4 138778010 138778117 -45510545 + L3 LINE CR1 1425 1532 -45 1949 125 0 0 chr4 138778305 138778608 -45510054 - AluSg SINE Alu 0 306 4 381 135 0 0 chr4 138778657 138778757 -45509905 + Alu SINE Alu 234 333 0 205 237 59 110 chr4 138779060 138779178 -45509484 + L2 LINE L2 2372 2483 -831 1109 242 168 11 chr4 138779451 138779814 -45508848 - MLT1G LTR MaLR 0 590 171 251 259 17 0 chr4 138779837 138779895 -45508767 - MLT1G LTR MaLR -529 61 3 1484 93 14 0 chr4 138779942 138780156 -45508506 + L1PA13 LINE L1 5942 6158 -5 361 307 71 38 chr4 138780506 138780718 -45507944 + L2 LINE L2 2555 2773 -541 1203 172 14 19 chr4 138780718 138780933 -45507729 - MER20 DNA MER1_type 0 219 6 272 258 35 142 chr4 138780995 138781255 -45507407 + L2 LINE L2 2847 3078 -194 194 382 22 11 chr4 138781347 138781436 -45507226 + L2 LINE L2 3141 3230 -42 852 88 0 0 chr4 138781536 138781649 -45507013 - AluSq/x SINE Alu -199 113 1 992 130 78 0 chr4 138781694 138781848 -45506814 - FRAM SINE Alu 0 166 1 367 191 14 7 chr4 138782971 138783116 -45505546 + GA-rich Low_complexity Low_complexity 1 146 0 594 0 0 0 chr4 138783118 138783184 -45505478 + (GAAA)n Simple_repeat Simple_repeat 3 68 0 183 143 0 71 chr4 138783729 138783771 -45504891 + MER5B DNA MER1_type 118 156 -22 268 243 93 84 chr4 138784178 138784285 -45504377 + MIR SINE MIR 85 192 -70 644 191 151 26 chr4 138784408 138784560 -45504102 + MER5B DNA MER1_type 1 171 -7 446 285 56 7 chr4 138784587 138784731 -45503931 + MIR SINE MIR 80 230 -32 23 0 0 29 chr4 138785174 138785193 -45503469 + AT_rich Low_complexity Low_complexity 1 20 -13 2076 96 0 17 chr4 138785193 138785486 -45503176 - AluSx SINE Alu -24 288 1 23 0 0 29 chr4 138785486 138785500 -45503162 + AT_rich Low_complexity Low_complexity 20 33 0 309 206 0 0 chr4 138785643 138785740 -45502922 + (TG)n Simple_repeat Simple_repeat 1 97 0 207 341 12 0 chr4 138786102 138786187 -45502475 - MIR SINE MIR -34 228 143 855 169 0 0 chr4 138786658 138786800 -45501862 + AluJb SINE Alu 165 306 -6 2032 112 0 47 chr4 138787104 138787426 -45501236 - AluSx SINE Alu -5 307 1 21 0 0 0 chr4 138787674 138787695 -45500967 + AT_rich Low_complexity Low_complexity 1 21 0 1168 201 121 41 chr4 138787712 138788050 -45500612 - MLT1A1 LTR MaLR 0 365 1 2329 53 3 10 chr4 138788533 138788832 -45499830 - AluY SINE Alu -14 297 1 774 183 52 5 chr4 138789284 138789475 -45499187 + LTR37A LTR ERV1 227 426 0 365 252 145 75 chr4 138789549 138789708 -45498954 - MIR SINE MIR -30 232 63 1531 187 79 18 chr4 138789757 138790099 -45498563 + MLT1A2 LTR MaLR 1 363 -11 1779 168 0 0 chr4 138790175 138790467 -45498195 - AluJo SINE Alu -10 302 11 1386 118 0 0 chr4 138790501 138790696 -45497966 - AluY SINE Alu -116 195 1 1009 157 0 12 chr4 138790709 138790875 -45497787 + FRAM SINE Alu 1 157 -19 270 81 0 0 chr4 138791547 138791584 -45497078 + (TG)n Simple_repeat Simple_repeat 1 37 0 976 128 41 17 chr4 138792500 138792672 -45495990 - MER57A LTR ERV1 0 403 228 634 84 0 0 chr4 138792674 138792757 -45495905 - MER57A LTR ERV1 -320 83 1 2139 99 0 0 chr4 138793027 138793320 -45495342 + AluSc SINE Alu 1 293 -16 4002 143 38 13 chr4 138793322 138793999 -45494663 - MER4D LTR ERV1 0 903 210 268 107 18 36 chr4 138794003 138794059 -45494603 - LTR46 LTR ERV1 0 460 406 1974 123 91 67 chr4 138794092 138794498 -45494164 - LTR46 LTR ERV1 -44 416 1 1416 112 5 0 chr4 138794498 138794695 -45493967 - MER4B LTR ERV1 -412 198 1 200 200 0 0 chr4 138794698 138794738 -45493924 + GA-rich Low_complexity Low_complexity 1 40 0 1378 233 103 39 chr4 138795114 138795690 -45492972 - LTR29 LTR ERV1 -3 650 10 1908 178 8 19 chr4 138795721 138796081 -45492581 - MER4D LTR ERV1 -1 902 547 1628 169 34 3 chr4 138796082 138796378 -45492284 + AluJb SINE Alu 1 305 -7 471 167 39 39 chr4 138796381 138796483 -45492179 - MER4E LTR ERV1 -616 163 62 * 1500 175 39 0 chr4 138796469 138796749 -45491913 - MER49 LTR ERV1 -629 294 4 913 96 15 7 chr4 138796947 138797082 -45491580 - AluSg/x SINE Alu -43 269 134 2071 132 0 0 chr4 138797082 138797392 -45491270 - AluSx SINE Alu -2 310 1 1757 119 0 12 chr4 138798049 138798302 -45490360 - AluSx SINE Alu -60 252 3 845 195 23 11 chr4 138798680 138798854 -45489808 - LTR39 LTR ERV1 0 783 608 1698 139 20 26 chr4 138798854 138799156 -45489506 - AluJb SINE Alu -7 305 6 691 136 10 0 chr4 138799176 138799279 -45489383 - AluJb SINE Alu -196 116 13 1458 145 4 13 chr4 138799282 138799516 -45489146 - LTR39 LTR ERV1 -152 631 400 1788 77 24 110 chr4 138799522 138799950 -45488712 - MER4A LTR ERV1 -2 655 131 2168 116 0 10 chr4 138799950 138800242 -45488420 + AluSx SINE Alu 6 294 -18 1788 77 24 110 chr4 138800242 138800361 -45488301 - MER4A LTR ERV1 -526 131 3 1936 165 62 31 chr4 138800363 138800750 -45487912 - LTR39 LTR ERV1 -383 400 2 847 199 89 52 chr4 138800980 138801007 -45487655 - L1ME1 LINE L1 -124 6042 6017 3288 98 36 18 chr4 138801007 138801505 -45487157 - MER84 LTR ERV1 0 507 1 847 199 89 52 chr4 138801505 138801768 -45486894 - L1ME1 LINE L1 -149 6017 5741 2317 145 37 37 chr4 138801774 138802182 -45486480 - MLT2D LTR ERVL -6 408 1 269 196 0 0 chr4 138802191 138802237 -45486425 - L1ME1 LINE L1 -637 5722 5677 2582 150 112 38 chr4 138802239 138802602 -45486060 + LTR49 LTR ERV1 1 420 -175 3604 76 90 49 chr4 138802602 138802952 -45485710 - MER4A LTR ERV1 0 600 215 2352 101 0 3 chr4 138802952 138803249 -45485413 - AluSp SINE Alu -16 297 2 3604 76 90 49 chr4 138803249 138803474 -45485188 - MER4A LTR ERV1 -385 215 1 2582 150 112 38 chr4 138803474 138803664 -45484998 + LTR49 LTR ERV1 420 595 0 1337 200 13 40 chr4 138803664 138803964 -45484698 - L1ME1 LINE L1 -491 5675 5384 513 323 53 12 chr4 138804733 138805074 -45483588 - L1M4 LINE L1 -2371 3775 3421 408 269 0 0 chr4 138805158 138805251 -45483411 - MER113 DNA MER1_type? -11 510 418 197 182 45 0 chr4 138806450 138806494 -45482168 + MIR SINE MIR 109 154 -108 2254 99 14 0 chr4 138807084 138807368 -45481294 + AluSx SINE Alu 1 288 -24 11814 114 31 11 chr4 138807586 138809360 -45479302 - Tigger2 DNA MER2_type 0 2718 909 21 0 0 0 chr4 138809597 138809618 -45479044 + AT_rich Low_complexity Low_complexity 1 21 0 923 149 7 7 chr4 138810381 138810529 -45478133 - Tigger2 DNA MER2_type -1795 923 776 189 147 0 0 chr4 138810529 138810563 -45478099 + (TTTTC)n Simple_repeat Simple_repeat 1 34 0 4201 123 22 72 chr4 138810563 138811330 -45477332 - Tigger2 DNA MER2_type -1925 793 65 524 143 0 0 chr4 138811361 138811438 -45477224 - Tigger2 DNA MER2_type -2640 78 2 1464 189 39 14 chr4 138811501 138811786 -45476876 + AluJo SINE Alu 1 292 -20 263 163 0 0 chr4 138811800 138811849 -45476813 - MIR SINE MIR -1 261 213 2621 59 0 0 chr4 138811950 138812257 -45476405 - AluY SINE Alu -4 307 1 373 235 0 87 chr4 138812258 138812407 -45476255 - MIR SINE MIR -36 226 91 362 330 84 7 chr4 138813209 138813506 -45475156 + L2 LINE L2 2966 3285 -28 1845 167 3 10 chr4 138813508 138813808 -45474854 + AluJo SINE Alu 1 298 -14 23 0 0 0 chr4 138813821 138813844 -45474818 + AT_rich Low_complexity Low_complexity 1 23 0 1687 213 77 43 chr4 138814025 138814542 -45474120 - L1ME2 LINE L1 -10 6154 5620 1878 158 0 3 chr4 138814642 138814934 -45473728 - AluSx SINE Alu -21 291 1 300 188 31 0 chr4 138815028 138815092 -45473570 - L1ME1 LINE L1 -869 5277 5212 2422 75 19 10 chr4 138816348 138816655 -45472007 + AluY SINE Alu 1 310 -1 357 136 93 185 chr4 138816688 138816774 -45471888 - LTR45B LTR ERV1 0 489 423 557 143 45 18 chr4 138816774 138816886 -45471776 - FLAM_C SINE Alu -16 117 3 357 136 93 185 chr4 138816886 138816961 -45471701 - LTR45B LTR ERV1 -66 423 343 201 178 156 0 chr4 138817591 138817636 -45471026 + MIR SINE MIR 118 169 -93 181 391 0 11 chr4 138817896 138817988 -45470674 + MIR SINE MIR 20 110 -98 222 321 128 0 chr4 138818017 138818126 -45470536 + MIR SINE MIR 29 151 -111 231 36 0 0 chr4 138818380 138818408 -45470254 + (CA)n Simple_repeat Simple_repeat 2 29 0 23 0 0 0 chr4 138818737 138818760 -45469902 + AT_rich Low_complexity Low_complexity 1 23 0 7896 18 0 9 chr4 138818760 138820367 -45468295 - L1PA4 LINE L1 -3 6152 4558 1404 87 6 0 chr4 138820427 138820599 -45468063 + AluSp SINE Alu 1 173 -140 2576 71 0 3 chr4 138820741 138821052 -45467610 - AluY SINE Alu -1 310 1 415 296 120 10 chr4 138821053 138821354 -45467308 + L1MC4 LINE L1 7709 8042 0 356 230 87 40 chr4 138822533 138822659 -45466003 - LTR16A1 LTR ERVL -1 456 325 1531 149 8 0 chr4 138822672 138822907 -45465755 - AluJb SINE Alu 0 312 76 3966 83 35 9 chr4 138822926 138823466 -45465196 - MER41A LTR ERV1 0 554 1 10194 68 20 1 chr4 138823466 138824764 -45463898 - MER41A-int LTR ERV1 -2 5944 4623 6543 169 105 46 chr4 138824757 138826198 -45462464 - HUERS-P1 LTR ERV1 -3691 2572 1047 * 5449 120 56 4 chr4 138826188 138826994 -45461668 - HUERS-P1 LTR ERV1 -5096 850 3 * 4398 71 7 0 chr4 138827101 138827651 -45461011 - MER41A LTR ERV1 0 554 1 467 136 0 49 chr4 138827652 138827733 -45460929 - AluJb SINE Alu -233 79 3 394 276 103 21 chr4 138827754 138827899 -45460763 - LTR16A1 LTR ERVL -154 303 147 22 35 0 0 chr4 138828708 138828737 -45459925 + AT_rich Low_complexity Low_complexity 1 29 0 391 209 100 9 chr4 138832137 138832247 -45456415 - L1ME4a LINE L1 0 6121 6002 2328 96 0 3 chr4 138834977 138835279 -45453383 - AluSp SINE Alu -9 304 4 744 231 107 0 chr4 138835477 138835646 -45453016 + MER5A DNA MER1_type 1 187 -2 304 186 97 80 chr4 138836017 138836130 -45452532 + MER112 DNA MER1_type 139 253 -7 2033 113 60 3 chr4 138836447 138836730 -45451932 - AluSx SINE Alu -13 299 1 2146 203 70 17 chr4 138837611 138838142 -45450520 - L1ME3A LINE L1 -5 6165 5607 201 271 0 29 chr4 138838568 138838638 -45450024 + MIR SINE MIR 51 111 -97 317 250 17 75 chr4 138839150 138839270 -45449392 + MIR SINE MIR 36 148 -60 2083 139 3 0 chr4 138839603 138839906 -45448756 + AluJb SINE Alu 1 304 -8 191 298 124 58 chr4 138840095 138840216 -45448446 - MIR SINE MIR -50 212 84 207 0 0 0 chr4 138840826 138840849 -45447813 + (A)n Simple_repeat Simple_repeat 1 23 0 896 110 0 0 chr4 138841007 138841125 -45447537 + FLAM_C SINE Alu 1 118 -25 203 167 0 0 chr4 138842025 138842061 -45446601 + L2 LINE L2 3237 3272 0 255 177 0 0 chr4 138842100 138842162 -45446500 + (CTG)n Simple_repeat Simple_repeat 2 63 0 2024 87 10 77 chr4 138842986 138843298 -45445364 + AluSg1 SINE Alu 1 291 -18 1084 206 38 21 chr4 138843842 138844080 -45444582 - L1PB4 LINE L1 -2 6154 5913 724 172 94 7 chr4 138844961 138845142 -45443520 + L1 LINE L1 5212 5417 -762 201 330 50 20 chr4 138845198 138845298 -45443364 + L3 LINE CR1 1058 1160 -417 2193 117 0 0 chr4 138846682 138846964 -45441698 + AluSx SINE Alu 1 282 -30 211 313 0 12 chr4 138847077 138847157 -45441505 + L2 LINE L2 3190 3268 -4 658 326 165 21 chr4 138847359 138847487 -45441175 - L3 LINE CR1 -106 1471 1363 2379 109 0 3 chr4 138847487 138847800 -45440862 + AluSq SINE Alu 1 312 -1 658 326 165 21 chr4 138847800 138848192 -45440470 - L3 LINE CR1 -214 1363 876 188 159 0 159 chr4 138848189 138848252 -45440410 - L2 LINE L2 -7 3265 3213 * 2307 138 37 5 chr4 138848850 138849228 -45439434 + MLT1B LTR MaLR 1 390 0 1030 253 88 72 chr4 138851475 138851945 -45436717 + MLT1J LTR MaLR 1 511 0 201 303 177 28 chr4 138852424 138852678 -45435984 - L2 LINE L2 -402 2912 2621 258 56 0 0 chr4 138853139 138853175 -45435487 + (TA)n Simple_repeat Simple_repeat 2 37 0 546 209 14 29 chr4 138853864 138854003 -45434659 + L2 LINE L2 3176 3312 -1 433 304 25 0 chr4 138856450 138856608 -45432054 + L3b LINE CR1 1108 1269 -314 432 299 157 15 chr4 138856773 138857034 -45431628 + L2 LINE L2 2314 2611 -703 839 217 0 0 chr4 138857102 138857259 -45431403 - AluJb SINE Alu -19 293 137 565 259 92 23 chr4 138857266 138857726 -45430936 + L2 LINE L2 2696 3272 0 2497 78 0 3 chr4 138858271 138858579 -45430083 + AluSc SINE Alu 1 307 -2 1678 160 21 18 chr4 138858845 138859150 -45429512 - AluJo SINE Alu 0 306 1 212 296 22 67 chr4 138860239 138860374 -45428288 - MIR SINE MIR -50 212 84 190 250 29 58 chr4 138862452 138862556 -45426106 - MIR SINE MIR 0 262 162 357 256 12 0 chr4 138862591 138862673 -45425989 - L2 LINE L2 -29 3243 3161 225 83 0 62 chr4 138863256 138863304 -45425358 + (CAAAC)n Simple_repeat Simple_repeat 5 49 0 21 57 0 0 chr4 138863457 138863492 -45425170 + AT_rich Low_complexity Low_complexity 1 35 0 300 143 0 0 chr4 138863492 138863541 -45425121 - L1PB1 LINE L1 -7 6144 6096 1834 155 0 24 chr4 138864540 138864836 -45423826 - AluJo SINE Alu -23 289 1 21 36 0 0 chr4 138865846 138865874 -45422788 + GC_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr4 138865902 138865936 -45422726 + GC_rich Low_complexity Low_complexity 1 34 0 207 125 0 0 chr4 138866945 138866985 -45421677 + (CA)n Simple_repeat Simple_repeat 2 41 0 21 0 0 0 chr4 138867001 138867022 -45421640 + AT_rich Low_complexity Low_complexity 1 21 0 205 183 14 70 chr4 138867764 138867835 -45420827 - MIR SINE MIR -10 252 186 2309 94 3 7 chr4 138868788 138869087 -45419575 + AluSx SINE Alu 1 298 -14 246 181 47 150 chr4 138869242 138869369 -45419293 - L1ME4a LINE L1 -38 6083 5970 1696 170 10 24 chr4 138870901 138871189 -45417473 + AluJo SINE Alu 7 290 -22 207 0 0 0 chr4 138871830 138871853 -45416809 + (TA)n Simple_repeat Simple_repeat 1 23 0 25 31 0 0 chr4 138872206 138872238 -45416424 + AT_rich Low_complexity Low_complexity 1 32 0 2131 121 6 19 chr4 138872434 138872747 -45415915 + AluSx SINE Alu 2 310 -2 824 189 139 0 chr4 138873115 138873295 -45415367 + MER3 DNA MER1_type 1 205 -4 1070 110 24 0 chr4 138874356 138874520 -45414142 - L1MB4 LINE L1 -1 6179 6012 414 0 0 0 chr4 138874553 138874599 -45414063 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 1140 253 27 20 chr4 138875652 138875948 -45412714 - L1MB4 LINE L1 -308 5813 5516 29 47 0 0 chr4 138876036 138876079 -45412583 + AT_rich Low_complexity Low_complexity 1 43 0 2091 80 0 22 chr4 138876538 138876813 -45411849 + AluY SINE Alu 7 275 -36 2180 120 23 0 chr4 138878579 138878878 -45409784 + AluSx SINE Alu 1 306 -6 217 268 148 62 chr4 138878911 138879120 -45409542 + L2 LINE L2 2826 3052 -220 418 292 253 16 chr4 138881178 138881558 -45407104 + L3 LINE CR1 406 875 -702 1508 92 0 5 chr4 138881680 138881875 -45406787 + AluSg/x SINE Alu 112 305 -5 2552 90 23 3 chr4 138885060 138885414 -45403248 - MER46B DNA MER2_type 0 236 1 582 173 130 37 chr4 138885957 138886119 -45402543 - MER104 DNA MER2_type -3 177 1 2492 90 0 0 chr4 138887068 138887380 -45401282 - AluSx SINE Alu 0 312 1 205 154 26 0 chr4 138887433 138887472 -45401190 + L2 LINE L2 3221 3260 -12 465 281 0 8 chr4 138889866 138889987 -45398675 + MIR3 SINE MIR 83 202 -6 22 35 0 0 chr4 138890659 138890688 -45397974 + AT_rich Low_complexity Low_complexity 1 29 0 243 94 0 0 chr4 138892343 138892375 -45396287 + Alu SINE Alu 1 32 -267 2563 145 30 13 chr4 138892562 138893030 -45395632 - L1MB4 LINE L1 0 6180 5705 2207 115 0 20 chr4 138893400 138893704 -45394958 + AluSx SINE Alu 2 299 -13 225 264 0 0 chr4 138894271 138894324 -45394338 - L2 LINE L2 -5 3267 3215 181 270 54 0 chr4 138894409 138894483 -45394179 - MIR3 SINE MIR -7 201 124 2618 58 0 6 chr4 138894915 138895227 -45393435 - AluY SINE Alu 0 311 2 268 306 32 48 chr4 138896488 138896612 -45392050 - 7SK RNA RNA -68 125 4 198 0 0 0 chr4 138899025 138899047 -45389615 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 299 267 111 0 chr4 138899124 138899214 -45389448 + MIR SINE MIR 89 188 -74 724 49 10 10 chr4 138900174 138900276 -45388386 + (GAAA)n Simple_repeat Simple_repeat 3 104 0 229 267 78 9 chr4 138900276 138900392 -45388270 + L1MC4 LINE L1 7918 8041 -1 419 165 0 59 chr4 138900456 138900541 -45388121 - MER116 DNA Mariner 0 80 1 21 82 0 0 chr4 138901096 138901145 -45387517 + AT_rich Low_complexity Low_complexity 1 49 0 27 0 0 0 chr4 138902238 138902265 -45386397 + AT_rich Low_complexity Low_complexity 1 27 0 686 135 203 43 chr4 138903496 138903659 -45385003 - MER53 DNA DNA 0 189 1 216 86 0 0 chr4 138903909 138903944 -45384718 + (TG)n Simple_repeat Simple_repeat 1 35 0 275 325 143 0 chr4 138904945 138905071 -45383591 + MIR SINE MIR 49 192 -70 826 186 100 0 chr4 138905362 138905502 -45383160 + AluJb SINE Alu 138 291 -21 450 310 66 15 chr4 138905960 138906157 -45382505 - MIR SINE MIR -33 229 23 462 321 83 0 chr4 138906233 138906401 -45382261 + MIR3 SINE MIR 4 185 -23 1194 429 64 0 chr4 138906507 138906787 -45381875 - AluSq SINE Alu -5 298 1 208 292 42 42 chr4 138906812 138906884 -45381778 + L3 LINE CR1 1500 1571 -6 2036 128 0 16 chr4 138907118 138907430 -45381232 + AluSq SINE Alu 2 308 -5 327 286 58 65 chr4 138907692 138907986 -45380676 + L1ME4a LINE L1 4374 4665 -1481 1144 263 110 23 chr4 138908489 138909180 -45379482 + L1ME4a LINE L1 5294 6039 -82 309 283 20 30 chr4 138909333 138909432 -45379230 + MIR SINE MIR 47 144 -64 186 43 0 0 chr4 138909506 138909529 -45379133 + (TG)n Simple_repeat Simple_repeat 2 24 0 306 148 0 0 chr4 138910421 138910475 -45378187 + (TTCA)n Simple_repeat Simple_repeat 2 55 0 180 125 0 0 chr4 138911146 138911178 -45377484 + (TG)n Simple_repeat Simple_repeat 2 33 0 309 51 0 0 chr4 138912081 138912120 -45376542 + (CA)n Simple_repeat Simple_repeat 1 39 0 2034 141 10 0 chr4 138912406 138912710 -45375952 - AluJo SINE Alu -5 307 1 536 271 82 72 chr4 138912989 138913452 -45375210 + MLT1J LTR MaLR 1 510 -1 203 261 11 65 chr4 138913499 138913591 -45375071 + MER91A DNA MER1_type 2 88 -108 4262 268 88 54 chr4 138913906 138914202 -45374460 + HAL1 LINE L1 4 289 -2218 1680 151 61 4 chr4 138914202 138914480 -45374182 + AluJo SINE Alu 2 295 -17 4262 268 88 54 chr4 138914480 138916225 -45372437 + HAL1 LINE L1 289 2114 -393 321 47 0 0 chr4 138916234 138916277 -45372385 + (CA)n Simple_repeat Simple_repeat 2 44 0 567 257 80 40 chr4 138916277 138916526 -45372136 + HAL1 LINE L1 2153 2411 -96 744 224 78 78 chr4 138917548 138917793 -45370869 - MIR SINE MIR 0 262 18 183 80 0 0 chr4 138919441 138919466 -45369196 + (TGGA)n Simple_repeat Simple_repeat 1 25 0 253 324 124 62 chr4 138919722 138920126 -45368536 + L2 LINE L2 2527 2955 -359 1047 189 11 21 chr4 138920197 138920387 -45368275 - MER5A DNA MER1_type -1 188 1 225 356 40 0 chr4 138920911 138921012 -45367650 + MIR SINE MIR 158 262 0 1056 278 27 24 chr4 138922856 138923187 -45365475 - L1ME4a LINE L1 -217 5904 5573 2563 114 0 18 chr4 138923435 138923778 -45364884 + MER1B DNA MER1_type 1 337 0 195 241 60 60 chr4 138923975 138924058 -45364604 + MIR SINE MIR 114 196 -66 774 189 0 0 chr4 138924282 138924506 -45364156 + (CACCAT)n Simple_repeat Simple_repeat 1 224 0 782 234 30 48 chr4 138925853 138926084 -45362578 + L2 LINE L2 3087 3313 0 180 179 128 0 chr4 138926280 138926319 -45362343 + MER5A DNA MER1_type 94 137 -52 234 335 123 13 chr4 138930697 138930852 -45357810 - L2 LINE L2 -14 3299 3128 186 43 0 0 chr4 138930930 138930953 -45357709 + (T)n Simple_repeat Simple_repeat 1 23 0 572 157 0 0 chr4 138931107 138931190 -45357472 + AluJb SINE Alu 197 279 -33 959 95 0 48 chr4 138931197 138931386 -45357276 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 496 186 17 0 chr4 138931390 138931508 -45357154 + GA-rich Low_complexity Low_complexity 1 120 0 274 268 139 62 chr4 138931519 138931757 -45356905 - L2 LINE L2 -236 3036 2787 733 349 134 13 chr4 138932032 138932502 -45356160 + L3 LINE CR1 1044 1570 -7 2593 50 0 0 chr4 138932631 138932934 -45355728 - AluY SINE Alu -8 303 1 2417 78 0 3 chr4 138934017 138934313 -45354349 - AluY SINE Alu -16 295 1 2020 136 6 28 chr4 138934315 138934632 -45354030 - AluSx SINE Alu -2 310 1 523 152 30 30 chr4 138936757 138936856 -45351806 - MER5A DNA MER1_type -77 112 14 195 317 33 17 chr4 138937797 138937857 -45350805 - MIR3 SINE MIR -21 187 127 2324 112 3 0 chr4 138939061 138939373 -45349289 + AluSp SINE Alu 1 313 0 2288 77 3 7 chr4 138939436 138939752 -45348910 + AluY SINE Alu 1 315 0 2316 103 0 0 chr4 138939858 138940160 -45348502 + AluSx SINE Alu 1 302 -10 218 211 18 35 chr4 138944566 138944623 -45344039 - MIR SINE MIR -109 153 98 1733 127 24 0 chr4 138944731 138944984 -45343678 - AluSx SINE Alu -4 308 50 2238 112 3 10 chr4 138944986 138945300 -45343362 - AluSx SINE Alu 0 312 1 378 121 0 0 chr4 138947183 138947249 -45341413 + (TC)n Simple_repeat Simple_repeat 2 67 0 26 30 0 0 chr4 138948520 138948553 -45340109 + AT_rich Low_complexity Low_complexity 1 33 0 2078 134 0 10 chr4 138948559 138948865 -45339797 - AluJo SINE Alu -7 305 3 278 286 26 0 chr4 138949316 138949393 -45339269 + CT-rich Low_complexity Low_complexity 3 81 0 183 139 0 0 chr4 138950116 138950152 -45338510 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 250 247 0 14 chr4 138950712 138950785 -45337877 + L1ME4a LINE L1 5983 6054 -67 574 228 8 8 chr4 138952547 138952674 -45335988 - MER94 DNA DNA 0 134 8 1534 159 0 37 chr4 138952754 138953025 -45335637 - AluJb SINE Alu -13 299 39 2273 107 3 10 chr4 138954625 138954935 -45333727 - AluSx SINE Alu -4 308 1 235 260 21 83 chr4 138955085 138955181 -45333481 + MIR SINE MIR 47 136 -126 589 214 39 114 chr4 138955953 138956032 -45332630 + MIR SINE MIR 30 113 -149 2331 87 3 6 chr4 138956032 138956343 -45332319 - AluSx SINE Alu -2 310 1 589 214 39 114 chr4 138956343 138956495 -45332167 + MIR SINE MIR 113 259 -3 395 304 16 16 chr4 138956497 138956622 -45332040 - MIR3 SINE MIR -45 163 39 307 275 69 30 chr4 138958288 138958419 -45330243 + L2 LINE L2 3136 3271 -1 1383 278 112 73 chr4 138959733 138960649 -45328013 - L3 LINE CR1 -3 1574 623 180 0 0 0 chr4 138960673 138960693 -45327969 + (T)n Simple_repeat Simple_repeat 1 20 0 1792 118 79 7 chr4 138961448 138961727 -45326935 - AluJb SINE Alu -13 299 1 545 275 50 0 chr4 138961825 138961985 -45326677 - MIR SINE MIR 0 262 95 280 272 10 39 chr4 138962046 138962149 -45326513 - LTR16B LTR ERVL 0 464 365 256 176 14 14 chr4 138963199 138963273 -45325389 + (TA)n Simple_repeat Simple_repeat 1 74 0 195 325 108 30 chr4 138963385 138963551 -45325111 + L2 LINE L2 2022 2200 -1114 297 0 0 0 chr4 138963698 138963731 -45324931 + (TG)n Simple_repeat Simple_repeat 2 34 0 217 354 46 0 chr4 138963742 138963872 -45324790 - MIR SINE MIR -80 182 47 744 216 5 54 chr4 138964084 138964148 -45324514 - MER5B DNA MER1_type 0 178 112 2244 117 3 3 chr4 138964148 138964457 -45324205 + AluSq SINE Alu 1 309 -4 744 216 5 54 chr4 138964457 138964577 -45324085 - MER5B DNA MER1_type -66 112 3 210 292 249 36 chr4 138964650 138964931 -45323731 + L2 LINE L2 2932 3272 0 635 299 37 28 chr4 138965031 138965168 -45323494 + MIR SINE MIR 13 154 -108 1628 117 0 0 chr4 138965168 138965391 -45323271 + AluSg/x SINE Alu 79 301 -9 635 299 37 28 chr4 138965391 138965467 -45323195 + MIR SINE MIR 154 228 -34 2070 109 48 0 chr4 138965564 138965857 -45322805 - AluSp SINE Alu -6 307 1 207 0 0 0 chr4 138966053 138966076 -45322586 + (T)n Simple_repeat Simple_repeat 1 23 0 261 0 0 0 chr4 138966223 138966252 -45322410 + (T)n Simple_repeat Simple_repeat 1 29 0 192 40 0 0 chr4 138966783 138966808 -45321854 + (T)n Simple_repeat Simple_repeat 1 25 0 662 258 162 15 chr4 138967018 138967289 -45321373 + MER115 DNA AcHobo 10 320 -373 731 228 74 0 chr4 138967408 138967597 -45321065 + MER115 DNA AcHobo 488 690 -3 279 311 44 37 chr4 138968194 138968329 -45320333 + L2 LINE L2 3172 3307 -6 344 292 251 0 chr4 138968743 138968935 -45319727 - MIR SINE MIR 0 262 29 261 184 0 184 chr4 138969024 138969127 -45319535 - MIR SINE MIR -108 154 71 204 317 0 17 chr4 138969313 138969373 -45319289 - L2 LINE L2 -14 3258 3200 664 324 24 24 chr4 138969783 138970033 -45318629 + MIR SINE MIR 2 251 -11 332 296 276 5 chr4 138971217 138971413 -45317249 + MIR SINE MIR 2 250 -12 1157 122 4 168 chr4 138971443 138971705 -45316957 - MER20 DNA MER1_type 0 219 1 958 132 112 0 chr4 138971947 138972099 -45316563 - AluJb SINE Alu -19 293 125 22 35 0 0 chr4 138973226 138973255 -45315407 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr4 138973499 138973526 -45315136 + AT_rich Low_complexity Low_complexity 1 27 0 2110 114 0 14 chr4 138974093 138974412 -45314250 + AluSx SINE Alu 1 315 0 2515 167 98 14 chr4 138974735 138975244 -45313418 + MLT1F1 LTR MaLR 14 565 -2 25 75 0 0 chr4 138975591 138975644 -45313018 + AT_rich Low_complexity Low_complexity 1 53 0 216 0 0 0 chr4 138975882 138975906 -45312756 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 499 332 30 34 chr4 138976004 138976098 -45312564 - MIR SINE MIR -21 241 148 2497 76 0 0 chr4 138976098 138976400 -45312262 - AluY SINE Alu -9 302 1 499 332 30 34 chr4 138976400 138976540 -45312122 - MIR SINE MIR -114 148 8 252 0 0 0 chr4 138977214 138977242 -45311420 + (A)n Simple_repeat Simple_repeat 1 28 0 1819 157 6 33 chr4 138977307 138977638 -45311024 + MER33 DNA MER1_type 3 324 0 2096 154 0 0 chr4 138980542 138980854 -45307808 + AluSx SINE Alu 1 312 0 240 196 20 0 chr4 138980872 138980923 -45307739 + (TGG)n Simple_repeat Simple_repeat 1 52 0 391 286 14 54 chr4 138980944 138981091 -45307571 + MER5A DNA MER1_type 49 189 0 2175 119 3 13 chr4 138981189 138981501 -45307161 + AluSx SINE Alu 1 309 -3 3319 272 94 103 chr4 138982120 138983004 -45305658 + HAL1 LINE L1 17 907 -1600 1994 111 35 7 chr4 138983004 138983292 -45305370 - AluSx SINE Alu -16 296 1 3319 272 94 103 chr4 138983292 138983988 -45304674 + HAL1 LINE L1 907 1608 -899 2278 116 0 0 chr4 138983988 138984311 -45304351 + AluSx SINE Alu 1 323 0 3319 272 94 103 chr4 138984311 138985237 -45303425 + HAL1 LINE L1 1608 2505 -2 21 0 0 0 chr4 138985283 138985304 -45303358 + AT_rich Low_complexity Low_complexity 1 21 0 2087 92 41 7 chr4 138985311 138985604 -45303058 - AluSq SINE Alu -10 303 1 183 267 9 138 chr4 138986263 138986379 -45302283 - L2 LINE L2 -11 3261 3161 1239 79 5 53 chr4 138986465 138986539 -45302123 + L1MA4A LINE L1 6113 6189 -114 1721 177 3 23 chr4 138986539 138986844 -45301818 + AluJo SINE Alu 1 299 -13 1239 79 5 53 chr4 138986844 138986958 -45301704 + L1MA4A LINE L1 6189 6292 -11 327 258 17 83 chr4 138986981 138987061 -45301601 + HAL1 LINE L1 1189 1260 -1247 2376 72 0 31 chr4 138987061 138987381 -45301281 + AluY SINE Alu 1 310 -1 327 258 17 83 chr4 138987381 138987420 -45301242 + HAL1 LINE L1 1260 1300 -1207 324 214 120 94 chr4 138987778 138988045 -45300617 - L1ME4a LINE L1 -15 6106 5833 432 55 0 0 chr4 138990904 138990959 -45297703 + (CTG)n Simple_repeat Simple_repeat 1 55 0 666 58 0 0 chr4 138991323 138991410 -45297252 + (CTG)n Simple_repeat Simple_repeat 3 89 0 2060 126 3 0 chr4 138992694 138992987 -45295675 - AluSx SINE Alu -8 304 11 338 321 82 30 chr4 138993205 138993473 -45295189 + L2 LINE L2 1931 2212 -1102 1929 84 0 23 chr4 138993775 138994038 -45294624 + AluY SINE Alu 45 301 -10 226 167 0 0 chr4 138994191 138994233 -45294429 + U5 snRNA snRNA 1 42 -74 443 286 0 85 chr4 138994238 138994427 -45294235 + L2 LINE L2 2909 3081 -191 254 229 51 68 chr4 138994536 138994654 -45294008 + L2 LINE L2 3157 3272 0 2060 111 4 7 chr4 138995316 138995654 -45293008 + AluSc SINE Alu 1 337 0 222 238 0 0 chr4 138996280 138996322 -45292340 + MIR SINE MIR 20 61 -201 295 229 303 0 chr4 138996378 138996487 -45292175 + L2 LINE L2 3172 3313 0 * 492 290 40 45 chr4 138996485 138996661 -45292001 + MIR SINE MIR 88 262 0 304 22 44 0 chr4 138997695 138997740 -45290922 + (TG)n Simple_repeat Simple_repeat 1 47 0 240 196 0 0 chr4 138997740 138997791 -45290871 + GA-rich Low_complexity Low_complexity 2 52 0 229 299 109 109 chr4 138998314 138998461 -45290201 - MIR SINE MIR -81 181 35 246 325 90 69 chr4 138998664 138999147 -45289515 + L2 LINE L2 2560 3054 -218 189 234 62 133 chr4 139000036 139000164 -45288498 + MER5B DNA MER1_type 2 120 -58 401 254 290 5 chr4 139001949 139002142 -45286520 - MIR SINE MIR -13 249 2 375 141 0 0 chr4 139003342 139003406 -45285256 + (CA)n Simple_repeat Simple_repeat 2 65 0 588 219 114 0 chr4 139004275 139004389 -45284273 - FLAM_C SINE Alu -5 128 2 944 144 73 27 chr4 139004657 139004843 -45283819 + MLT1B LTR MaLR 8 184 -206 1265 156 46 161 chr4 139004843 139005253 -45283409 - MLT1A1 LTR MaLR -2 363 1 944 144 73 27 chr4 139005253 139005373 -45283289 + MLT1B LTR MaLR 184 387 -3 236 343 160 39 chr4 139005493 139005805 -45282857 - L2 LINE L2 -23 3249 2900 1828 147 88 28 chr4 139005812 139006131 -45282531 - MER7A DNA MER2_type -10 336 1 2355 91 3 3 chr4 139006326 139006624 -45282038 + AluY SINE Alu 1 298 -13 2236 147 30 45 chr4 139006676 139007072 -45281590 - MLT1B LTR MaLR 0 390 1 606 190 9 69 chr4 139007256 139007372 -45281290 - FLAM_A SINE Alu -33 109 1 564 211 18 18 chr4 139008337 139008446 -45280216 + MIR3 SINE MIR 79 187 -21 182 291 0 81 chr4 139008698 139008784 -45279878 - L2 LINE L2 -4 3309 3231 216 310 28 0 chr4 139010241 139010312 -45278350 + MIR SINE MIR 76 148 -114 2106 126 20 0 chr4 139010680 139010974 -45277688 + AluSg SINE Alu 3 302 -8 821 126 22 15 chr4 139011302 139011437 -45277225 + MER5A DNA MER1_type 30 165 -24 704 175 0 120 chr4 139011489 139011672 -45276990 + MER3 DNA MER1_type 49 209 0 822 115 0 23 chr4 139011987 139012117 -45276545 - L1MB3 LINE L1 -6 6177 6051 1575 186 21 4 chr4 139012219 139012498 -45276164 + MLT1A1 LTR MaLR 82 365 0 1232 157 77 13 chr4 139012498 139012733 -45275929 - L1MB3 LINE L1 -380 5791 5542 192 331 15 73 chr4 139012824 139012960 -45275702 - L2 LINE L2 -1857 1457 1330 2077 208 19 38 chr4 139013038 139013514 -45275148 + MLT1C LTR MaLR 1 467 0 370 252 165 0 chr4 139014841 139014956 -45273706 - L2 LINE L2 -1 3271 3138 501 193 37 9 chr4 139016582 139016691 -45271971 - MIR SINE MIR -75 187 76 190 304 38 38 chr4 139017280 139017359 -45271303 + MIR SINE MIR 117 195 -67 1471 291 52 26 chr4 139017848 139018422 -45270240 + L3 LINE CR1 977 1565 -12 680 285 132 36 chr4 139018627 139019326 -45269336 + L2 LINE L2 2558 3313 0 536 322 60 5 chr4 139019673 139019872 -45268790 + L3b LINE CR1 1371 1580 -3 207 0 0 0 chr4 139024185 139024208 -45264454 + (TG)n Simple_repeat Simple_repeat 2 24 0 2100 124 0 0 chr4 139025790 139026096 -45262566 - AluSx SINE Alu 0 306 1 2355 87 0 6 chr4 139026883 139027194 -45261468 + AluY SINE Alu 1 309 -2 1323 190 80 59 chr4 139027243 139027632 -45261030 - L1MD3 LINE L1 -10 7985 7589 937 143 0 0 chr4 139027657 139027790 -45260872 - AluSq/x SINE Alu -179 133 1 3502 247 36 10 chr4 139027799 139028768 -45259894 - L1MC4 LINE L1 -548 7494 6501 188 352 73 68 chr4 139028848 139029246 -45259416 - L2 LINE L2 0 3272 2873 655 153 9 9 chr4 139031667 139031778 -45256884 - MER45A DNA AcHobo 0 178 68 2224 86 0 30 chr4 139032294 139032596 -45256066 + AluSq SINE Alu 1 293 -20 283 192 26 0 chr4 139033680 139033758 -45254904 + GA-rich Low_complexity Low_complexity 1 80 0 465 298 6 0 chr4 139034442 139034610 -45254052 + (TG)n Simple_repeat Simple_repeat 1 169 0 350 276 0 8 chr4 139034654 139034915 -45253747 + (TG)n Simple_repeat Simple_repeat 1 258 0 4605 126 35 44 chr4 139036295 139037083 -45251579 - L1MA9 LINE L1 0 6312 5532 1034 165 0 24 chr4 139037130 139037300 -45251362 + FAM SINE Alu 1 43 -6 2124 122 7 3 chr4 139037959 139038254 -45250408 - AluSx SINE Alu -16 296 1 554 299 27 27 chr4 139038842 139039029 -45249633 - MIR3 SINE MIR -12 196 10 253 274 163 53 chr4 139039756 139039946 -45248716 + L2 LINE L2 2567 2777 -537 243 336 103 0 chr4 139040223 139040330 -45248332 + L2 LINE L2 3182 3299 -14 2388 80 0 3 chr4 139040331 139040630 -45248032 - AluSg SINE Alu -12 298 1 330 306 51 0 chr4 139040949 139041047 -45247615 + MIR SINE MIR 51 153 -109 228 111 0 0 chr4 139042109 139042145 -45246517 + (TGG)n Simple_repeat Simple_repeat 1 36 0 2032 125 10 3 chr4 139042418 139042715 -45245947 + AluSq SINE Alu 1 299 -14 354 23 0 0 chr4 139042738 139042781 -45245881 + (CAGG)n Simple_repeat Simple_repeat 2 44 0 2350 88 0 7 chr4 139044431 139044736 -45243926 - AluSc SINE Alu -6 303 1 3701 10 0 5 chr4 139044747 139045144 -45243518 - L1PA2 LINE L1 -2 6153 5759 4405 10 0 0 chr4 139045144 139045637 -45243025 + L1PA2 LINE L1 5271 5763 -392 27 0 0 0 chr4 139045944 139045971 -45242691 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr4 139046296 139046318 -45242344 + AT_rich Low_complexity Low_complexity 1 22 0 333 0 0 0 chr4 139047456 139047493 -45241169 + (CA)n Simple_repeat Simple_repeat 1 37 0 252 0 0 0 chr4 139047492 139047520 -45241142 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 236 102 82 41 chr4 139048243 139048292 -45240370 + MIR SINE MIR 77 127 -135 2162 94 7 7 chr4 139048387 139048712 -45239950 + AluSp SINE Alu 2 313 0 604 193 146 12 chr4 139049346 139049517 -45239145 - MIR SINE MIR -59 203 10 2315 85 3 7 chr4 139049576 139049881 -45238781 - AluSc SINE Alu -5 304 1 2476 160 53 33 chr4 139050315 139050617 -45238045 + MLT2C2 LTR ERVL 1 316 -148 2281 90 7 3 chr4 139050617 139050906 -45237756 - AluSg SINE Alu -20 290 1 2476 160 53 33 chr4 139050906 139051058 -45237604 + MLT2C2 LTR ERVL 316 464 0 222 261 0 0 chr4 139051677 139051723 -45236939 + polypyrimidine Low_complexity Low_complexity 1 46 0 2158 130 0 3 chr4 139052448 139052755 -45235907 + AluSq SINE Alu 1 306 -7 585 218 9 22 chr4 139053246 139053381 -45235281 + MLT1J2 LTR MaLR 59 218 -271 2037 118 24 0 chr4 139053916 139054203 -45234459 + AluSx SINE Alu 7 300 -12 334 303 101 0 chr4 139054552 139054671 -45233991 - MER5A DNA MER1_type -58 131 1 759 190 0 0 chr4 139055254 139055375 -45233287 - FLAM_A SINE Alu -10 132 12 488 182 10 0 chr4 139055376 139055475 -45233187 + L1MA4A LINE L1 6198 6297 -6 192 200 0 0 chr4 139055491 139055536 -45233126 + (TAA)n Simple_repeat Simple_repeat 2 46 0 342 260 40 30 chr4 139056419 139056519 -45232143 + MLT1J1 LTR MaLR 250 350 -96 388 276 54 47 chr4 139056643 139056795 -45231867 + MIR SINE MIR 49 194 -63 509 278 32 0 chr4 139057574 139057700 -45230962 - MIR SINE MIR -120 142 13 582 299 27 5 chr4 139057755 139057939 -45230723 - MIR SINE MIR -34 228 41 325 317 61 88 chr4 139058894 139059156 -45229506 - L2 LINE L2 0 3272 3018 380 148 16 0 chr4 139059758 139059819 -45228843 + LTR40a LTR ERVL 458 519 0 1845 141 0 31 chr4 139062399 139062689 -45225973 + AluJb SINE Alu 1 281 -31 406 163 35 0 chr4 139063195 139063281 -45225381 + L1MC2 LINE L1 6255 6343 -1 722 173 0 0 chr4 139063705 139063815 -45224847 + FLAM_A SINE Alu 1 110 -32 333 277 15 8 chr4 139063890 139063991 -45224671 - MER5A DNA MER1_type -83 106 4 4048 75 17 8 chr4 139064627 139065146 -45223516 + L1PA8A LINE L1 5607 6130 -1 215 167 21 0 chr4 139065261 139065309 -45223353 + T-rich Low_complexity Low_complexity 5 53 0 733 232 6 57 chr4 139065388 139065565 -45223097 + MER63A DNA MER1_type 1 168 -42 2470 78 0 0 chr4 139066505 139066801 -45221861 + AluY SINE Alu 1 296 -15 216 0 0 0 chr4 139067156 139067180 -45221482 + (TG)n Simple_repeat Simple_repeat 2 25 0 402 310 64 9 chr4 139067350 139067771 -45220891 + L1M4 LINE L1 4207 4665 -1481 2263 82 0 13 chr4 139068475 139068778 -45219884 - AluSq SINE Alu -14 299 1 256 220 0 0 chr4 139069630 139069680 -45218982 - MER45A DNA AcHobo -3 175 126 958 83 23 15 chr4 139069681 139069813 -45218849 + AluSq/x SINE Alu 1 133 -180 2198 113 0 0 chr4 139069816 139070116 -45218546 + AluSx SINE Alu 1 300 -12 658 200 15 0 chr4 139070118 139070248 -45218414 - MER45A DNA AcHobo -46 132 1 233 259 0 0 chr4 139070620 139070674 -45217988 - MIR SINE MIR -22 240 187 436 270 68 25 chr4 139071179 139071342 -45217320 + MIR SINE MIR 15 184 -78 382 339 6 24 chr4 139071676 139071841 -45216821 + MIR3 SINE MIR 26 187 -21 2281 113 0 0 chr4 139072176 139072477 -45216185 + AluSx SINE Alu 1 301 -11 1573 129 43 32 chr4 139072794 139072926 -45215736 + MER2 DNA MER2_type 1 130 -215 2438 84 3 0 chr4 139072926 139073225 -45215437 - AluSp SINE Alu -13 300 1 1573 129 43 32 chr4 139073225 139073371 -45215291 + MER2 DNA MER2_type 130 282 -63 1952 121 0 0 chr4 139073471 139073735 -45214927 + AluSx SINE Alu 35 298 -14 1521 199 36 99 chr4 139073769 139073911 -45214751 - L1M4 LINE L1 -875 5271 5122 2368 81 0 7 chr4 139073911 139074207 -45214455 + AluSq SINE Alu 1 294 -19 1521 199 36 99 chr4 139074207 139074750 -45213912 - L1M4 LINE L1 -1024 5122 4364 1610 189 18 0 chr4 139074750 139075031 -45213631 + AluJo SINE Alu 1 286 -26 1521 199 36 99 chr4 139075031 139075127 -45213535 - L1M4 LINE L1 -1782 4364 4263 183 42 0 0 chr4 139075127 139075151 -45213511 + (TGG)n Simple_repeat Simple_repeat 1 24 0 485 313 17 17 chr4 139075635 139075811 -45212851 + MER5B DNA MER1_type 3 178 0 2055 116 0 0 chr4 139075936 139076211 -45212451 + AluSx SINE Alu 21 295 -17 481 244 153 24 chr4 139076300 139076509 -45212153 - MER74A LTR ERVL 0 558 323 436 144 0 38 chr4 139076613 139076745 -45211917 + (TA)n Simple_repeat Simple_repeat 1 127 0 2024 116 24 7 chr4 139076754 139077046 -45211616 - AluSx SINE Alu -15 297 1 483 244 8 17 chr4 139078086 139078205 -45210457 + L2 LINE L2 3196 3313 0 2394 97 3 3 chr4 139079925 139080235 -45208427 + AluSp SINE Alu 1 310 -3 2524 88 39 39 chr4 139081265 139081673 -45206989 - L1MA8 LINE L1 -5 6286 5879 200 294 118 12 chr4 139082903 139082988 -45205674 + MIR SINE MIR 61 154 -108 237 292 50 42 chr4 139083042 139083162 -45205500 + MIR3 SINE MIR 36 156 -52 2273 114 0 0 chr4 139085713 139086021 -45202641 + AluSx SINE Alu 1 308 -4 468 252 0 0 chr4 139086227 139086338 -45202324 - MIR SINE MIR 0 262 152 459 267 45 13 chr4 139086999 139087178 -45201484 + L1M4 LINE L1 49 512 -6343 330 302 72 14 chr4 139087567 139087706 -45200956 + L1M4 LINE L1 1055 1201 -5654 1790 239 88 93 chr4 139087765 139089436 -45199226 + L1M4 LINE L1 1190 3006 -4132 204 97 0 0 chr4 139089444 139089475 -45199187 + (TA)n Simple_repeat Simple_repeat 1 31 0 2213 109 7 0 chr4 139089510 139089814 -45198848 - AluSc SINE Alu -3 306 1 3624 261 114 33 chr4 139089814 139089884 -45198778 + L1M4 LINE L1 2946 3009 -3948 198 0 0 0 chr4 139089884 139089906 -45198756 + (CA)n Simple_repeat Simple_repeat 2 23 0 3624 261 114 33 chr4 139089906 139091661 -45197001 + L1M4 LINE L1 3009 4918 -2039 414 0 0 0 chr4 139093086 139093132 -45195530 + (CA)n Simple_repeat Simple_repeat 2 47 0 324 115 0 0 chr4 139093580 139093614 -45195048 + (GAAAA)n Simple_repeat Simple_repeat 2 38 -15 2050 108 3 96 chr4 139093614 139093946 -45194716 + AluSx SINE Alu 2 302 0 324 115 0 0 chr4 139093946 139093963 -45194699 + (GAAAA)n Simple_repeat Simple_repeat 37 53 0 681 263 105 0 chr4 139094163 139094372 -45194290 - MIR SINE MIR -21 241 11 180 260 100 0 chr4 139095559 139095609 -45193053 + MIR SINE MIR 45 99 -109 226 330 86 84 chr4 139095670 139096052 -45192610 - L2 LINE L2 -83 3189 2807 238 245 143 20 chr4 139096407 139096505 -45192157 + L2 LINE L2 3180 3289 -24 21 36 0 0 chr4 139097286 139097314 -45191348 + AT_rich Low_complexity Low_complexity 1 28 0 1326 97 5 16 chr4 139097709 139097895 -45190767 - L1PA11 LINE L1 0 6174 5991 540 271 11 28 chr4 139098014 139098195 -45190467 + MARNA DNA Mariner 139 316 -270 772 192 0 0 chr4 139098265 139098411 -45190251 + L1ME1 LINE L1 6018 6163 -3 2554 60 0 0 chr4 139099768 139100067 -45188595 - AluY SINE Alu -12 299 1 365 308 25 8 chr4 139100208 139100328 -45188334 + MIR3 SINE MIR 76 197 -11 348 183 24 37 chr4 139100852 139100934 -45187728 + L2 LINE L2 3004 3084 -229 729 230 16 78 chr4 139100972 139101229 -45187433 + L2 LINE L2 3072 3312 -1 855 222 42 28 chr4 139102327 139102447 -45186215 + MER20 DNA MER1_type 1 127 -92 2096 156 55 9 chr4 139102447 139102793 -45185869 + MLT1A1 LTR MaLR 1 362 -3 855 222 42 28 chr4 139102793 139102888 -45185774 + MER20 DNA MER1_type 127 219 0 2246 112 0 0 chr4 139103113 139103425 -45185237 + AluSx SINE Alu 1 312 0 410 243 74 63 chr4 139103484 139103673 -45184989 - MIR3 SINE MIR -2 206 16 404 330 91 6 chr4 139104566 139104742 -45183920 - MIR SINE MIR 0 262 72 1376 160 59 116 chr4 139105039 139105426 -45183236 + MLT1A1 LTR MaLR 1 365 0 552 212 6 97 chr4 139106166 139106331 -45182331 - L2 LINE L2 0 3313 3164 195 42 0 0 chr4 139106332 139106356 -45182306 + (TAA)n Simple_repeat Simple_repeat 1 24 0 5592 184 74 48 chr4 139106522 139106554 -45182108 - L1MC3 LINE L1 0 7785 7755 1923 168 20 43 chr4 139106554 139106953 -45181709 - MLT1B LTR MaLR 0 390 1 5592 184 74 48 chr4 139106953 139108902 -45179760 - L1MC3 LINE L1 -30 7755 5884 205 298 75 32 chr4 139108912 139108984 -45179678 - L2 LINE L2 -1311 2003 1925 1273 172 8 17 chr4 139108984 139109222 -45179440 - MER46A DNA MER2_type 0 236 1 205 298 75 32 chr4 139109222 139109243 -45179419 - L2 LINE L2 -1389 1925 1906 1276 315 126 11 chr4 139109251 139109950 -45178712 - L2 LINE L2 -1971 1343 565 1923 148 90 0 chr4 139110113 139110470 -45178192 - MLT2C1 LTR ERVL -8 389 1 2370 89 6 6 chr4 139113261 139113574 -45175088 + AluSq SINE Alu 1 313 0 2237 91 0 0 chr4 139113591 139113878 -45174784 + AluSx SINE Alu 24 310 -2 550 222 42 0 chr4 139114164 139114308 -45174354 + L1ME2 LINE L1 6006 6155 -9 348 43 0 0 chr4 139115362 139115408 -45173254 + (CA)n Simple_repeat Simple_repeat 1 46 0 294 29 0 0 chr4 139115407 139115442 -45173220 + (GA)n Simple_repeat Simple_repeat 2 36 0 * 26 0 0 0 chr4 139115462 139115488 -45173174 + AT_rich Low_complexity Low_complexity 1 26 0 10151 31 0 0 chr4 139115729 139116990 -45171672 + L1P LINE L1 3794 5054 -1092 857 224 6 0 chr4 139117225 139117390 -45171272 + AluJb SINE Alu 137 302 -10 21 36 0 0 chr4 139117395 139117423 -45171239 + AT_rich Low_complexity Low_complexity 1 28 0 1672 246 65 33 chr4 139117423 139118053 -45170609 - L1ME1 LINE L1 -44 6122 5473 247 149 0 0 chr4 139118056 139118103 -45170559 - Alu SINE Alu -2 298 252 2190 82 29 44 chr4 139118583 139118899 -45169763 + AluSx SINE Alu 2 312 0 34 24 0 0 chr4 139119555 139119596 -45169066 + AT_rich Low_complexity Low_complexity 1 41 0 649 171 0 47 chr4 139119597 139119702 -45168960 + AluJo/FLAM SINE Alu 1 100 -202 1982 138 0 3 chr4 139119702 139119985 -45168677 + AluSx SINE Alu 1 282 -30 649 171 0 47 chr4 139119985 139120008 -45168654 + AluJo/FLAM SINE Alu 100 123 -179 1283 171 14 18 chr4 139120008 139120225 -45168437 + AluJo SINE Alu 83 298 -14 759 287 30 17 chr4 139120469 139120699 -45167963 + MIR SINE MIR 16 248 -14 3123 85 17 0 chr4 139120707 139121167 -45167495 - Tigger4(Zombi) DNA MER2_type 0 2731 2264 953 183 12 0 chr4 139121166 139121330 -45167332 - Tigger4(Zombi) DNA MER2_type -2565 166 1 * 942 37 30 8 chr4 139121501 139121635 -45167027 + (TTTC)n Simple_repeat Simple_repeat 2 138 0 2142 98 0 0 chr4 139121637 139121912 -45166750 - AluSc SINE Alu -34 275 1 548 324 78 5 chr4 139123770 139123989 -45164673 - MIR SINE MIR -23 239 5 415 250 15 8 chr4 139124632 139124764 -45163898 + L1ME4a LINE L1 5713 5845 -276 185 305 0 0 chr4 139124782 139124841 -45163821 - L2 LINE L2 -75 3238 3180 25 51 0 0 chr4 139125238 139125277 -45163385 + AT_rich Low_complexity Low_complexity 1 39 0 4676 203 41 29 chr4 139125700 139125909 -45162753 + L1MD1 LINE L1 3968 4173 -2069 2083 142 3 0 chr4 139125909 139126211 -45162451 + AluSx SINE Alu 1 303 -9 4676 203 41 29 chr4 139126211 139128253 -45160409 + L1MD1 LINE L1 4173 6242 0 202 220 0 0 chr4 139129134 139129184 -45159478 + A-rich Low_complexity Low_complexity 3 52 0 640 321 109 42 chr4 139129338 139129724 -45158938 + L2 LINE L2 2861 3272 0 371 277 36 20 chr4 139131416 139131547 -45157115 + MIR SINE MIR 18 157 -51 333 273 205 25 chr4 139131635 139131796 -45156866 - MIR SINE MIR -7 255 66 615 250 69 0 chr4 139132152 139132312 -45156350 - MIR SINE MIR -91 171 1 505 170 178 0 chr4 139133220 139133355 -45155307 - MER103 DNA DNA -1 165 7 204 302 174 12 chr4 139133454 139133540 -45155122 + MIR3 SINE MIR 82 181 -27 808 210 56 20 chr4 139134255 139134450 -45154212 - MIR SINE MIR -3 259 58 1768 168 3 3 chr4 139134465 139134751 -45153911 - AluJo SINE Alu -12 300 15 253 108 0 0 chr4 139134766 139134803 -45153859 - AluJo SINE Alu -271 37 1 203 154 0 26 chr4 139134814 139134853 -45153809 - MIR SINE MIR -219 43 6 372 288 96 14 chr4 139135300 139135581 -45153081 + L1MC5 LINE L1 7487 7790 -171 206 317 12 0 chr4 139136423 139136505 -45152157 + (TA)n Simple_repeat Simple_repeat 1 83 0 2147 115 3 0 chr4 139136505 139136791 -45151871 - AluSx SINE Alu -25 287 1 350 270 61 20 chr4 139136958 139137154 -45151508 - L1ME4a LINE L1 -205 5916 5713 240 333 147 55 chr4 139137832 139138268 -45150394 - L3 LINE CR1 -875 702 227 201 328 17 0 chr4 139138274 139138332 -45150330 - L2 LINE L2 0 3313 3255 248 175 16 0 chr4 139138649 139138712 -45149950 + CT-rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr4 139139776 139139797 -45148865 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr4 139141581 139141618 -45147044 + AT_rich Low_complexity Low_complexity 1 37 0 377 287 82 8 chr4 139142415 139142537 -45146125 - MIR3 SINE MIR -14 194 64 331 243 45 27 chr4 139142877 139142988 -45145674 + L1ME4a LINE L1 5547 5659 -462 315 270 20 20 chr4 139143002 139143102 -45145560 + L1ME4a LINE L1 6021 6120 -1 180 0 0 0 chr4 139143117 139143137 -45145525 + (A)n Simple_repeat Simple_repeat 1 20 0 859 212 87 5 chr4 139143827 139144011 -45144651 + MIR SINE MIR 5 203 -59 204 125 0 0 chr4 139144270 139144302 -45144360 + (CAA)n Simple_repeat Simple_repeat 1 32 0 424 193 24 12 chr4 139144837 139144920 -45143742 + MIR SINE MIR 5 88 -174 2073 125 0 14 chr4 139145216 139145511 -45143151 - AluSx SINE Alu -21 291 1 2080 84 47 10 chr4 139145754 139146050 -45142612 + AluY SINE Alu 2 308 -3 203 114 23 0 chr4 139147480 139147524 -45141138 + A-rich Low_complexity Low_complexity 2 46 0 493 246 98 0 chr4 139148444 139148566 -45140096 - MIR3 SINE MIR -1 207 74 833 248 49 4 chr4 139148770 139148996 -45139666 + MIR SINE MIR 3 238 -24 1964 109 40 20 chr4 139149085 139149387 -45139275 + AluY SINE Alu 1 308 -3 260 264 23 23 chr4 139151530 139151579 -45137083 + GA-rich Low_complexity Low_complexity 5 56 -35 1930 132 14 3 chr4 139151579 139151868 -45136794 + AluSx SINE Alu 1 292 -20 260 264 23 23 chr4 139151868 139151905 -45136757 + GA-rich Low_complexity Low_complexity 55 91 0 730 257 133 0 chr4 139152190 139152415 -45136247 - MIR SINE MIR -3 259 1 203 176 0 0 chr4 139152415 139152449 -45136213 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 2315 81 0 0 chr4 139152605 139152890 -45135772 + AluY SINE Alu 16 300 -11 204 277 0 0 chr4 139153402 139153449 -45135213 + CT-rich Low_complexity Low_complexity 3 49 0 2306 112 3 0 chr4 139155351 139155654 -45133008 + AluSx SINE Alu 1 304 -8 290 285 4 21 chr4 139155743 139155884 -45132778 - L1ME LINE L1 -281 5840 5701 1205 264 56 28 chr4 139156296 139156690 -45131972 + MLT1I LTR MaLR 3 407 -2 181 299 19 122 chr4 139156837 139156944 -45131718 - L2 LINE L2 -8 3264 3169 22 0 0 0 chr4 139157087 139157109 -45131553 + AT_rich Low_complexity Low_complexity 1 22 0 2354 90 0 10 chr4 139161510 139161810 -45126852 + AluSx SINE Alu 1 297 -15 322 313 78 0 chr4 139162032 139162147 -45126515 - MIR3 SINE MIR -83 125 2 2272 126 0 0 chr4 139162769 139163071 -45125591 - AluSx SINE Alu -9 303 2 905 238 93 23 chr4 139163871 139164173 -45124489 - MER58B DNA MER1_type 0 341 19 2242 113 3 0 chr4 139164325 139164636 -45124026 + AluSx SINE Alu 1 312 0 191 309 92 88 chr4 139164768 139165040 -45123622 + L2 LINE L2 2953 3225 -47 757 302 36 8 chr4 139165133 139165381 -45123281 + L3 LINE CR1 1320 1574 -3 228 274 42 53 chr4 139165953 139166048 -45122614 - L2 LINE L2 -5 3267 3174 202 261 14 14 chr4 139166186 139166255 -45122407 + A-rich Low_complexity Low_complexity 5 73 0 993 104 0 0 chr4 139166582 139166717 -45121945 - AluSp/q SINE Alu 0 313 179 2097 100 3 17 chr4 139166762 139167061 -45121601 + AluSx SINE Alu 1 295 -17 314 315 110 10 chr4 139167112 139167312 -45121350 - MIR SINE MIR 0 262 43 1127 178 42 5 chr4 139167314 139167505 -45121157 + AluJo SINE Alu 85 282 -30 873 98 49 8 chr4 139168507 139168629 -45120033 - FLAM_C SINE Alu -6 127 1 221 164 49 0 chr4 139168758 139168819 -45119843 + (TA)n Simple_repeat Simple_repeat 2 65 0 311 270 113 25 chr4 139168850 139169009 -45119653 - L1ME4a LINE L1 -225 5896 5724 21 36 0 0 chr4 139169782 139169810 -45118852 + AT_rich Low_complexity Low_complexity 1 28 0 2481 80 0 0 chr4 139170321 139170623 -45118039 + AluSx SINE Alu 1 302 -10 667 225 47 30 chr4 139172568 139172737 -45115925 + MER5A DNA MER1_type 18 189 0 656 286 65 5 chr4 139173219 139173420 -45115242 - MIR SINE MIR -12 250 34 198 232 18 18 chr4 139176117 139176173 -45112489 + L2 LINE L2 3258 3313 0 228 35 0 0 chr4 139177438 139177467 -45111195 + (TG)n Simple_repeat Simple_repeat 1 29 0 2128 119 10 13 chr4 139177964 139178267 -45110395 - AluSq SINE Alu -10 303 2 705 172 45 64 chr4 139178307 139178464 -45110198 - MLT1G LTR MaLR -423 167 14 635 284 39 10 chr4 139178824 139179032 -45109630 + MIR SINE MIR 49 262 0 220 257 0 29 chr4 139179038 139179108 -45109554 + MIR SINE MIR 193 260 -2 345 170 0 0 chr4 139179504 139179557 -45109105 + AluS SINE Alu 228 280 -22 1082 125 6 0 chr4 139179562 139179738 -45108924 + (GGAGAA)n Simple_repeat Simple_repeat 3 179 0 745 160 24 6 chr4 139179740 139179909 -45108753 + GA-rich Low_complexity Low_complexity 6 177 0 189 48 0 71 chr4 139179927 139179969 -45108693 + (GAA)n Simple_repeat Simple_repeat 2 40 0 2122 113 0 0 chr4 139180071 139180384 -45108278 + AluSx SINE Alu 1 313 0 385 287 52 17 chr4 139180398 139180513 -45108149 + L2 LINE L2 3150 3268 -4 203 161 0 0 chr4 139181460 139181491 -45107171 + polypyrimidine Low_complexity Low_complexity 1 31 0 297 0 0 0 chr4 139181993 139182026 -45106636 + (GA)n Simple_repeat Simple_repeat 2 34 0 435 154 73 109 chr4 139182404 139182514 -45106148 - MER2 DNA MER2_type 0 345 240 2204 97 0 0 chr4 139182730 139183048 -45105614 + AluSc SINE Alu 1 318 0 29 0 0 0 chr4 139184269 139184298 -45104364 + AT_rich Low_complexity Low_complexity 1 29 0 2150 111 0 3 chr4 139184298 139184587 -45104075 - AluSx SINE Alu -24 288 1 488 221 18 0 chr4 139185486 139185599 -45103063 + MER5C DNA MER1_type 208 322 -2 22 0 0 0 chr4 139187737 139187759 -45100903 + AT_rich Low_complexity Low_complexity 1 22 0 220 263 203 53 chr4 139188059 139188192 -45100470 - MIR SINE MIR -74 188 36 378 61 0 0 chr4 139188913 139188962 -45099700 + (CA)n Simple_repeat Simple_repeat 2 50 0 351 0 0 0 chr4 139188961 139189000 -45099662 + (GA)n Simple_repeat Simple_repeat 2 40 0 * 188 188 0 0 chr4 139189103 139189135 -45099527 + L2 LINE L2 3241 3272 0 2193 111 7 0 chr4 139191871 139192169 -45096493 + AluSx SINE Alu 1 300 -12 310 357 32 36 chr4 139192494 139192746 -45095916 - L1ME LINE L1 -517 5604 5354 1197 185 56 5 chr4 139192983 139193199 -45095463 + AluJo SINE Alu 44 270 -42 307 160 27 13 chr4 139193203 139193278 -45095384 + GA-rich Low_complexity Low_complexity 1 76 0 465 297 40 24 chr4 139194365 139194555 -45094107 + MIR3 SINE MIR 8 205 -3 1135 183 20 60 chr4 139194574 139194826 -45093836 + L1ME1 LINE L1 5825 6066 -100 593 121 0 0 chr4 139194829 139194912 -45093750 - AluJ/FLAM SINE Alu -225 87 5 284 260 67 0 chr4 139194919 139195025 -45093637 + L1ME1 LINE L1 6062 6213 -17 632 261 87 60 chr4 139195414 139195632 -45093030 - MIR SINE MIR -3 259 36 1948 161 3 0 chr4 139195762 139196072 -45092590 + AluSx SINE Alu 1 311 -1 250 23 47 23 chr4 139196508 139196551 -45092111 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 462 114 0 0 chr4 139197056 139197126 -45091536 + (TA)n Simple_repeat Simple_repeat 1 70 0 2412 66 0 38 chr4 139198402 139198721 -45089941 - AluY SINE Alu -4 307 1 216 275 107 90 chr4 139200789 139201022 -45087640 + L2 LINE L2 3018 3254 -18 180 152 87 87 chr4 139203040 139203086 -45085576 - L2 LINE L2 -1 3271 3226 437 295 102 0 chr4 139203244 139203410 -45085252 + MIR SINE MIR 53 235 -27 279 281 0 0 chr4 139203419 139203483 -45085179 - L2 LINE L2 -2 3311 3248 300 91 0 0 chr4 139204223 139204267 -45084395 + (CA)n Simple_repeat Simple_repeat 1 44 0 809 156 0 0 chr4 139204380 139204508 -45084154 - FRAM SINE Alu 0 40 1 268 278 104 35 chr4 139204545 139204660 -45084002 + MIR SINE MIR 21 143 -119 193 312 39 0 chr4 139205185 139205262 -45083400 + L2 LINE L2 3004 3083 -189 1732 234 77 79 chr4 139205693 139206249 -45082413 + MLT1H1 LTR MaLR 1 555 0 185 267 79 59 chr4 139206843 139206944 -45081718 + MIR SINE MIR 65 167 -95 358 303 24 18 chr4 139209426 139209591 -45079071 - MIR SINE MIR -16 246 81 516 311 53 10 chr4 139210761 139210967 -45077695 + MIR SINE MIR 25 239 -23 2405 91 0 3 chr4 139211441 139211750 -45076912 + AluSg SINE Alu 1 308 -2 898 119 8 8 chr4 139212310 139212444 -45076218 - AluJb SINE Alu -167 145 12 2020 160 41 25 chr4 139213865 139214250 -45074412 + MLT1B LTR MaLR 3 567 0 2846 7 0 0 chr4 139215429 139215730 -45072932 - AluYa5 SINE Alu -10 301 1 1747 133 11 11 chr4 139215756 139216020 -45072642 + AluSq SINE Alu 38 301 -12 2408 92 15 9 chr4 139216116 139216452 -45072210 - THE1C LTR MaLR -37 338 1 2827 10 0 0 chr4 139217984 139218285 -45070377 - AluY SINE Alu -10 301 1 831 163 0 14 chr4 139218472 139218613 -45070049 + FRAM SINE Alu 18 156 -20 252 86 0 0 chr4 139218613 139218648 -45070014 + (GGGA)n Simple_repeat Simple_repeat 1 35 0 249 229 14 29 chr4 139219450 139219520 -45069142 - MIR SINE MIR -85 123 55 2582 47 0 0 chr4 139222392 139222691 -45065971 - AluY SINE Alu -12 299 1 1956 136 0 4 chr4 139224393 139224673 -45063989 + AluJo SINE Alu 1 279 -33 380 111 0 0 chr4 139224677 139224731 -45063931 - Alu SINE Alu -1 301 248 676 199 8 0 chr4 139224814 139224945 -45063717 + FLAM_C SINE Alu 2 133 0 1836 87 0 9 chr4 139225445 139225675 -45062987 + AluSg SINE Alu 1 228 -82 757 162 8 0 chr4 139227815 139227932 -45060730 + FLAM_A SINE Alu 1 118 -15 22 70 0 0 chr4 139227949 139227992 -45060670 + AT_rich Low_complexity Low_complexity 1 43 0 821 158 0 0 chr4 139228153 139228286 -45060376 - FLAM_C SINE Alu 0 133 1 2321 85 4 0 chr4 139228298 139228604 -45060058 - AluSg SINE Alu 0 307 1 21 0 0 0 chr4 139228700 139228721 -45059941 + AT_rich Low_complexity Low_complexity 1 21 0 386 299 197 35 chr4 139228993 139229743 -45058919 + L2 LINE L2 2013 2884 -430 213 39 0 0 chr4 139230956 139230982 -45057680 + (A)n Simple_repeat Simple_repeat 1 26 0 2344 101 0 0 chr4 139231716 139232014 -45056648 - AluSq SINE Alu -15 298 1 2314 98 0 0 chr4 139232351 139232648 -45056014 - AluSx SINE Alu -15 297 1 225 241 264 0 chr4 139233367 139233454 -45055208 + MIR SINE MIR 145 254 -8 220 200 0 60 chr4 139233981 139234031 -45054631 + polypurine Low_complexity Low_complexity 2 48 0 596 228 51 0 chr4 139236747 139236905 -45051757 - L1MC4 LINE L1 -443 7599 7434 * 1362 148 86 23 chr4 139236903 139237206 -45051456 - L1MC4 LINE L1 -898 7144 6823 448 201 39 172 chr4 139237774 139237844 -45050818 - MER69 DNA AcHobo 0 2526 2448 2153 106 7 3 chr4 139237844 139238147 -45050515 + AluY SINE Alu 3 306 -5 448 201 39 172 chr4 139238147 139238280 -45050382 - MER69 DNA AcHobo -78 2448 1 241 335 39 17 chr4 139238841 139239020 -45049642 + L2 LINE L2 2918 3100 -172 210 264 69 11 chr4 139239141 139239228 -45049434 + L2 LINE L2 3179 3270 -2 768 208 120 35 chr4 139239489 139239773 -45048889 - L1MC5 LINE L1 -50 7911 7604 528 103 0 0 chr4 139242387 139242455 -45046207 + AluJ/FRAM SINE Alu 221 288 -24 363 192 0 0 chr4 139242455 139242533 -45046129 + (TA)n Simple_repeat Simple_repeat 1 78 0 805 251 72 13 chr4 139243047 139243282 -45045380 + MIR SINE MIR 12 260 -2 865 141 47 0 chr4 139243406 139243534 -45045128 + AluJo SINE Alu 1 134 -178 28 0 0 0 chr4 139244028 139244056 -45044606 + AT_rich Low_complexity Low_complexity 1 28 0 230 234 0 0 chr4 139244774 139244821 -45043841 + MIR SINE MIR 1 47 -215 694 293 28 19 chr4 139245632 139245999 -45042663 + L1MC4a LINE L1 5640 5997 -124 284 208 94 42 chr4 139246075 139246171 -45042491 - L2 LINE L2 -4 3309 3209 891 302 31 31 chr4 139246221 139246579 -45042083 - L3 LINE CR1 -154 1423 1066 366 267 78 0 chr4 139246880 139246970 -45041692 + L2 LINE L2 3160 3256 -16 2474 66 0 0 chr4 139247177 139247464 -45041198 + AluSg SINE Alu 1 287 -23 602 201 87 87 chr4 139247736 139247955 -45040707 - MER20 DNA MER1_type 0 219 1 1784 126 60 23 chr4 139247961 139248262 -45040400 + AluJo SINE Alu 1 312 0 2163 93 7 0 chr4 139249248 139249559 -45039103 - AluSg SINE Alu 0 313 1 2317 113 3 0 chr4 139249559 139249869 -45038793 - AluSq SINE Alu -2 311 1 2349 92 7 3 chr4 139250550 139250854 -45037808 + AluSc SINE Alu 1 305 -4 225 171 0 0 chr4 139251590 139251645 -45037017 + (TGAG)n Simple_repeat Simple_repeat 1 55 0 192 77 0 0 chr4 139253628 139253654 -45035008 + (T)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr4 139254707 139254728 -45033934 + GC_rich Low_complexity Low_complexity 1 21 0 323 96 19 0 chr4 139254886 139254938 -45033724 + (GGA)n Simple_repeat Simple_repeat 1 53 0 23 33 0 0 chr4 139255370 139255400 -45033262 + GC_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 139256836 139256864 -45031798 + GC_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr4 139257804 139257826 -45030836 + (CCG)n Simple_repeat Simple_repeat 2 23 0 * 288 91 0 0 chr4 139257824 139257868 -45030794 + (TCC)n Simple_repeat Simple_repeat 1 44 0 230 283 115 0 chr4 139258167 139258280 -45030382 + L2 LINE L2 2135 2260 -1054 1252 274 62 31 chr4 139258290 139258636 -45030026 + L2 LINE L2 2364 2735 -579 2297 103 3 3 chr4 139258636 139258946 -45029716 - AluSg SINE Alu 0 310 1 1252 274 62 31 chr4 139258946 139259151 -45029511 + L2 LINE L2 2735 2932 -382 830 334 45 15 chr4 139259197 139259595 -45029067 + LTR16A LTR ERVL 16 425 -25 303 315 11 0 chr4 139259613 139259705 -45028957 + L2 LINE L2 3004 3096 -217 241 130 87 22 chr4 139259733 139259825 -45028837 + (TA)n Simple_repeat Simple_repeat 1 98 0 354 253 158 7 chr4 139259825 139259971 -45028691 + L2 LINE L2 3141 3308 -5 991 174 29 0 chr4 139260063 139260235 -45028427 - FRAM SINE Alu -1 175 1 791 310 56 24 chr4 139260318 139260996 -45027666 + L1ME3A LINE L1 4137 4836 -1310 552 273 122 31 chr4 139261045 139261766 -45026896 + L1ME3A LINE L1 4903 5741 -421 1360 125 46 8 chr4 139261775 139261827 -45026835 + Tigger1 DNA MER2_type 1 50 -2368 360 0 0 0 chr4 139261827 139261867 -45026795 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 1360 125 46 8 chr4 139261867 139262054 -45026608 + Tigger1 DNA MER2_type 50 249 -2169 * 4363 121 17 10 chr4 139262048 139262393 -45026269 + Tigger1 DNA MER2_type 1694 2035 -383 1689 126 75 0 chr4 139262393 139262648 -45026014 + AluSx SINE Alu 32 305 -7 4363 121 17 10 chr4 139262648 139263022 -45025640 + Tigger1 DNA MER2_type 2035 2418 0 336 278 24 16 chr4 139263023 139263149 -45025513 + L1ME3A LINE L1 5757 5883 -287 40 21 0 0 chr4 139263473 139263520 -45025142 + AT_rich Low_complexity Low_complexity 1 47 0 7218 126 19 26 chr4 139263951 139264675 -45023987 + Tigger3b DNA MER2_type 1 715 -2313 1519 120 0 0 chr4 139264675 139264875 -45023787 + AluSg/x SINE Alu 100 299 -13 7218 126 19 26 chr4 139264875 139265389 -45023273 + Tigger3b DNA MER2_type 715 1231 0 462 202 195 92 chr4 139265518 139265953 -45022709 + L1ME4a LINE L1 5639 6118 -3 2012 126 0 14 chr4 139265967 139266276 -45022386 - AluSx SINE Alu 0 305 1 26 30 0 0 chr4 139267415 139267448 -45021214 + AT_rich Low_complexity Low_complexity 1 33 0 291 299 177 20 chr4 139269392 139269539 -45019123 + MIR SINE MIR 61 230 -32 973 227 130 29 chr4 139269574 139269958 -45018704 - LTR16C LTR ERVL 0 491 69 807 246 99 14 chr4 139270559 139270770 -45017892 + MIR SINE MIR 13 241 -21 876 201 36 69 chr4 139270901 139271175 -45017487 + L1MA10 LINE L1 6069 6333 -1 2000 148 10 3 chr4 139271701 139272004 -45016658 + AluJo SINE Alu 6 310 -2 421 259 146 27 chr4 139272141 139272326 -45016336 + MIR3 SINE MIR 2 208 0 1039 227 91 3 chr4 139272658 139272966 -45015696 - L2 LINE L2 -1350 1964 1630 3144 276 61 17 chr4 139272977 139273020 -45015642 - L2 LINE L2 -2178 1136 1096 243 0 0 0 chr4 139273020 139273047 -45015615 + (GA)n Simple_repeat Simple_repeat 2 28 0 3144 276 61 17 chr4 139273047 139273791 -45014871 - L2 LINE L2 -2218 1096 287 986 209 66 19 chr4 139273791 139274002 -45014660 + MER58A DNA MER1_type 1 221 -3 3144 276 61 17 chr4 139274002 139274280 -45014382 - L2 LINE L2 -3027 287 23 229 320 48 39 chr4 139275235 139275338 -45013324 - L2 LINE L2 -2 3270 3167 * 678 338 78 15 chr4 139275333 139275667 -45012995 + L3 LINE CR1 180 534 -1043 231 277 151 34 chr4 139275865 139275984 -45012678 + L3 LINE CR1 564 696 -881 1323 160 24 0 chr4 139276083 139276295 -45012367 + AluSx SINE Alu 1 217 -95 218 285 66 140 chr4 139276528 139276756 -45011906 + L2 LINE L2 3022 3232 -40 2402 92 0 0 chr4 139278494 139278799 -45009863 - AluSx SINE Alu -7 305 1 23 0 0 0 chr4 139279822 139279845 -45008817 + AT_rich Low_complexity Low_complexity 1 23 0 276 257 28 46 chr4 139280325 139280434 -45008228 - L2 LINE L2 -1 3312 3206 289 230 40 0 chr4 139280862 139280936 -45007726 - MER103 DNA DNA -70 96 20 21 36 0 0 chr4 139281827 139281855 -45006807 + AT_rich Low_complexity Low_complexity 1 28 0 485 246 0 9 chr4 139281938 139282052 -45006610 - MIR SINE MIR -102 160 48 2146 109 0 0 chr4 139282139 139282449 -45006213 + AluSx SINE Alu 1 310 0 247 300 0 0 chr4 139283092 139283162 -45005500 - MIR SINE MIR -33 229 160 29 0 0 0 chr4 139283257 139283286 -45005376 + AT_rich Low_complexity Low_complexity 1 29 0 330 26 0 0 chr4 139283305 139283344 -45005318 + (TG)n Simple_repeat Simple_repeat 2 40 0 3820 38 19 0 chr4 139283352 139283821 -45004841 - L1PA8 LINE L1 -4 6168 5691 1506 172 37 4 chr4 139283878 139284183 -45004479 + AluJb SINE Alu 1 314 0 1510 179 36 59 chr4 139284284 139284641 -45004021 + MLT1A2 LTR MaLR 1 349 -25 960 141 34 0 chr4 139284647 139284796 -45003866 - FRAM SINE Alu -26 150 1 280 241 0 0 chr4 139284892 139284950 -45003712 - MIR SINE MIR -110 152 95 298 260 110 24 chr4 139285063 139285190 -45003472 - L2 LINE L2 -3 3310 3173 947 189 0 22 chr4 139286563 139286743 -45001919 + FRAM SINE Alu 1 176 0 2034 119 6 31 chr4 139286754 139287072 -45001590 + AluY SINE Alu 2 311 0 815 294 89 37 chr4 139287480 139287939 -45000723 + MLT1K LTR MaLR 45 527 -61 2141 123 3 13 chr4 139287967 139288276 -45000386 - AluSg SINE Alu -4 306 1 324 0 0 0 chr4 139288293 139288329 -45000333 + (TG)n Simple_repeat Simple_repeat 1 36 0 392 292 71 31 chr4 139288567 139288793 -44999869 + L1MC4a LINE L1 5653 5887 -1921 2211 147 28 8 chr4 139288793 139289500 -44999162 + L1MA8 LINE L1 5528 6291 0 2528 44 3 0 chr4 139289507 139289801 -44998861 - AluY SINE Alu -15 296 2 2211 123 0 3 chr4 139290016 139290326 -44998336 - AluSg1 SINE Alu 0 309 1 216 158 0 0 chr4 139290341 139290379 -44998283 + GA-rich Low_complexity Low_complexity 4 41 0 1797 289 39 5 chr4 139290744 139290871 -44997791 + L2 LINE L2 2262 2383 -931 1508 227 77 30 chr4 139290871 139291368 -44997294 + MLT2B1 LTR ERVL 1 520 0 1797 289 39 5 chr4 139291368 139291825 -44996837 + L2 LINE L2 2383 2866 -448 2409 86 0 16 chr4 139291857 139292172 -44996490 - AluSp SINE Alu -3 310 1 504 306 131 0 chr4 139292547 139292769 -44995893 - MIR SINE MIR 0 262 12 239 313 12 50 chr4 139293130 139293210 -44995452 - L2 LINE L2 0 3313 3237 578 284 26 46 chr4 139293245 139293439 -44995223 + MIR SINE MIR 5 194 -68 289 326 90 42 chr4 139294005 139294149 -44994513 + MIR3 SINE MIR 24 174 -34 1143 180 14 18 chr4 139295381 139295598 -44993064 + AluJo SINE Alu 82 297 -15 2867 242 24 30 chr4 139295635 139295953 -44992709 - L1M4 LINE L1 -743 5403 5085 647 202 31 0 chr4 139295953 139296082 -44992580 + FLAM_C SINE Alu 1 133 0 2867 242 24 30 chr4 139296082 139296102 -44992560 - L1M4 LINE L1 -1061 5085 5066 2306 74 17 10 chr4 139296102 139296398 -44992264 + AluSc SINE Alu 1 298 -11 2867 242 24 30 chr4 139296398 139297048 -44991614 - L1M4 LINE L1 -1080 5066 4420 840 252 104 46 chr4 139297072 139297532 -44991130 - LTR33A LTR ERVL -34 489 3 248 312 48 24 chr4 139297741 139297991 -44990671 + L1M4 LINE L1 3602 3857 -2289 276 280 11 44 chr4 139348111 139348293 -44940369 + (CATA)n Simple_repeat Simple_repeat 1 176 0 * 281 263 26 32 chr4 139348157 139348313 -44940349 + (CATATA)n Simple_repeat Simple_repeat 3 157 0 * 290 271 20 40 chr4 139348215 139348366 -44940296 + (CA)n Simple_repeat Simple_repeat 1 148 0 190 219 26 26 chr4 139348383 139348534 -44940128 + (CA)n Simple_repeat Simple_repeat 2 152 0 366 248 33 35 chr4 139348549 139348938 -44939724 + (CA)n Simple_repeat Simple_repeat 1 388 0 3299 96 4 4 chr4 139349304 139349772 -44938890 + HERVH LTR ERV1 3509 3976 -3737 1337 184 10 61 chr4 139349872 139349937 -44938725 + MLT1A1 LTR MaLR 88 155 -210 2196 91 0 0 chr4 139349937 139350212 -44938450 + AluY SINE Alu 20 294 -17 1337 184 10 61 chr4 139350212 139350439 -44938223 + MLT1A1 LTR MaLR 155 365 0 24 0 0 0 chr4 139351421 139351445 -44937217 + AT_rich Low_complexity Low_complexity 1 24 0 323 143 0 0 chr4 139351601 139351650 -44937012 - tRNA-Cys-TGC tRNA tRNA -26 49 1 390 205 12 24 chr4 139351677 139351760 -44936902 + MER81 DNA DNA 1 82 -32 1840 117 33 7 chr4 139351760 139352063 -44936599 + AluSx SINE Alu 1 310 0 1761 131 0 19 chr4 139352078 139352215 -44936447 + AluSx SINE Alu 1 132 -180 2251 82 3 0 chr4 139352215 139352526 -44936136 + AluY SINE Alu 1 311 0 1761 131 0 19 chr4 139352526 139352648 -44936014 + AluSx SINE Alu 132 255 -57 469 88 12 62 chr4 139352748 139352828 -44935834 + HERVH LTR ERV1 7638 7713 0 2934 75 120 0 chr4 139352828 139353228 -44935434 + LTR7 LTR ERV1 1 448 -2 1925 158 0 0 chr4 139353486 139353784 -44934878 + AluJo SINE Alu 1 298 -14 1351 161 29 11 chr4 139353923 139354197 -44934465 + L1 LINE L1 4147 4425 -1721 267 136 23 0 chr4 139354805 139354849 -44933813 - L2 LINE L2 -5 3308 3264 2740 23 0 0 chr4 139354849 139355152 -44933510 - AluYa5 SINE Alu -8 303 1 247 271 94 63 chr4 139355214 139355381 -44933281 + MIR SINE MIR 24 191 -71 28 48 0 0 chr4 139355482 139355524 -44933138 + AT_rich Low_complexity Low_complexity 1 42 0 316 268 110 24 chr4 139355669 139355833 -44932829 - L1ME1 LINE L1 -221 5945 5768 205 161 43 11 chr4 139355983 139356076 -44932586 + (TA)n Simple_repeat Simple_repeat 1 96 0 4026 88 40 148 chr4 139356098 139356652 -44932010 - Tigger3(Golem) DNA MER2_type -40 2989 2377 1247 181 30 86 chr4 139356652 139356956 -44931706 + AluJo SINE Alu 1 287 -25 4026 88 40 148 chr4 139356956 139357054 -44931608 - Tigger3(Golem) DNA MER2_type -652 2377 2270 836 224 0 0 chr4 139357054 139357215 -44931447 + AluJb SINE Alu 137 297 -15 4026 88 40 148 chr4 139357215 139357739 -44930923 - Tigger3(Golem) DNA MER2_type -759 2270 3 255 61 0 0 chr4 139357739 139357772 -44930890 + (TG)n Simple_repeat Simple_repeat 2 34 0 218 313 21 62 chr4 139357934 139358078 -44930584 + L2 LINE L2 2848 2985 -328 1225 124 0 0 chr4 139358078 139358247 -44930415 - AluSg/x SINE Alu -18 292 124 206 309 82 10 chr4 139358347 139358444 -44930218 - L2 LINE L2 -48 3224 3121 500 159 122 9 chr4 139361223 139361330 -44927332 - L2 LINE L2 -5 3308 3190 202 299 45 0 chr4 139361447 139361514 -44927148 + MER5A DNA MER1_type 113 182 -7 1619 168 30 24 chr4 139361525 139361822 -44926840 + AluJo SINE Alu 1 299 -13 325 235 47 40 chr4 139361953 139362102 -44926560 + (TG)n Simple_repeat Simple_repeat 1 150 0 357 270 35 29 chr4 139362127 139362301 -44926361 + (TG)n Simple_repeat Simple_repeat 1 175 0 456 250 33 34 chr4 139362353 139362753 -44925909 + (TG)n Simple_repeat Simple_repeat 1 399 0 340 266 34 34 chr4 139362792 139362969 -44925693 + (TATG)n Simple_repeat Simple_repeat 1 177 0 * 422 229 39 34 chr4 139362927 139363106 -44925556 + (TG)n Simple_repeat Simple_repeat 1 180 0 250 226 117 80 chr4 139363754 139363843 -44924819 - MIR SINE MIR -2 260 163 2129 133 3 0 chr4 139363843 139364144 -44924518 - AluSx SINE Alu -10 302 1 250 226 117 80 chr4 139364144 139364191 -44924471 - MIR SINE MIR -99 163 119 312 271 266 16 chr4 139364852 139365044 -44923618 + MIR SINE MIR 22 261 -1 198 0 0 0 chr4 139365254 139365276 -44923386 + (T)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr4 139365795 139365817 -44922845 + AT_rich Low_complexity Low_complexity 1 22 0 354 163 93 0 chr4 139367059 139367145 -44921517 - MER53 DNA DNA 0 189 96 264 268 50 10 chr4 139367259 139367378 -44921284 - MIR3 SINE MIR -23 185 60 228 262 43 85 chr4 139369455 139369596 -44919066 - L2 LINE L2 0 3272 3138 764 161 0 8 chr4 139369620 139369744 -44918918 + FLAM_C SINE Alu 2 124 -19 762 238 79 23 chr4 139369844 139370305 -44918357 + MER20B DNA MER1_type 259 772 -11 2009 166 95 0 chr4 139370487 139370855 -44917807 - MER57A LTR ERV1 0 403 1 1275 173 115 37 chr4 139371368 139371691 -44916971 - MLT1A1 LTR MaLR -6 359 12 216 315 0 0 chr4 139371894 139371948 -44916714 + polypurine Low_complexity Low_complexity 3 56 0 252 173 19 0 chr4 139372010 139372062 -44916600 + MLT1G1 LTR MaLR 10 62 -533 487 233 111 52 chr4 139372727 139372997 -44915665 + LTR33A LTR ERVL 238 523 0 2028 245 51 37 chr4 139374258 139374805 -44913857 + MLT1H1 LTR MaLR 1 555 0 1881 159 3 3 chr4 139374848 139375143 -44913519 - AluJo SINE Alu -15 297 3 287 203 34 0 chr4 139375350 139375409 -44913253 + MER5A DNA MER1_type 2 62 -127 981 175 0 0 chr4 139375438 139375592 -44913070 - AluJo SINE Alu -12 290 137 263 109 36 73 chr4 139375592 139375647 -44913015 - AluJo SINE Alu -166 136 84 * 1569 188 35 25 chr4 139375638 139375952 -44912710 - MER74A LTR ERVL -241 317 1 221 294 161 21 chr4 139375952 139376095 -44912567 - MIR SINE MIR -99 163 1 243 235 0 94 chr4 139376840 139376925 -44911737 - L2 LINE L2 -25 3288 3212 344 262 79 16 chr4 139377110 139377236 -44911426 + L2 LINE L2 3180 3313 0 21 0 0 0 chr4 139377283 139377304 -44911358 + AT_rich Low_complexity Low_complexity 1 21 0 399 303 80 6 chr4 139379480 139379655 -44909007 + MIR SINE MIR 6 193 -69 2544 143 26 14 chr4 139379662 139380082 -44908580 + MSTB1 LTR MaLR 8 432 0 204 246 0 16 chr4 139380129 139380190 -44908472 + CT-rich Low_complexity Low_complexity 1 60 0 450 53 0 0 chr4 139380408 139380465 -44908197 + (TG)n Simple_repeat Simple_repeat 1 57 0 196 171 0 0 chr4 139380485 139380520 -44908142 + MIR SINE MIR 156 190 -72 214 77 0 0 chr4 139380938 139380964 -44907698 + (CA)n Simple_repeat Simple_repeat 2 27 0 2627 88 8 14 chr4 139381515 139381880 -44906782 - L1PA8A LINE L1 -1 6130 5768 1004 277 112 15 chr4 139381941 139382480 -44906182 + LTR50 LTR ERVL 3 676 -119 2587 169 107 4 chr4 139382482 139382948 -44905714 - MLT2B2 LTR ERVL 0 515 2 333 218 127 9 chr4 139382950 139383060 -44905602 + LTR50 LTR ERVL 672 794 -1 510 336 7 7 chr4 139383178 139383324 -44905338 + MLT1K LTR MaLR 79 224 -364 302 245 66 0 chr4 139383927 139384033 -44904629 - MIR SINE MIR -75 187 75 2007 104 0 71 chr4 139385278 139385586 -44903076 + AluSc SINE Alu 1 286 -23 28 0 0 0 chr4 139387162 139387190 -44901472 + AT_rich Low_complexity Low_complexity 1 28 0 958 168 84 11 chr4 139387914 139388105 -44900557 + MER3 DNA MER1_type 5 209 0 977 192 50 23 chr4 139388162 139388381 -44900281 + AluJo SINE Alu 85 309 -3 224 345 59 8 chr4 139391896 139392015 -44896647 + MIR3 SINE MIR 33 157 -51 2133 110 0 20 chr4 139392894 139393186 -44895476 - AluSg SINE Alu -24 286 1 330 302 111 6 chr4 139393450 139393622 -44895040 + MIR SINE MIR 60 249 -13 223 313 72 12 chr4 139393806 139393889 -44894773 - MIR SINE MIR -101 107 20 578 103 8 26 chr4 139394749 139394866 -44893796 + (CA)n Simple_repeat Simple_repeat 2 116 0 196 175 32 16 chr4 139394924 139394987 -44893675 + GA-rich Low_complexity Low_complexity 3 66 0 355 301 85 23 chr4 139396490 139396666 -44891996 - MIR3 SINE MIR -9 199 13 735 231 65 16 chr4 139397404 139397590 -44891072 - MER3 DNA MER1_type -1 208 14 262 351 84 10 chr4 139397614 139397816 -44890846 - MIR SINE MIR 0 262 46 676 307 76 0 chr4 139397883 139398121 -44890541 - MIR SINE MIR -5 257 2 2057 68 57 4 chr4 139398878 139399143 -44889519 - AluSc SINE Alu -4 305 27 263 329 13 0 chr4 139399882 139399961 -44888701 + L3 LINE CR1 1403 1482 -95 189 239 228 11 chr4 139400434 139400526 -44888136 + L2 LINE L2 3153 3264 -8 207 0 0 0 chr4 139400800 139400823 -44887839 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1956 124 53 0 chr4 139401912 139402195 -44886467 - AluSx SINE Alu -14 298 1 2330 213 36 11 chr4 139402975 139403445 -44885217 - MLT1F LTR MaLR -60 482 1 310 269 215 0 chr4 139404005 139404154 -44884508 - MIR SINE MIR -27 235 55 311 347 28 17 chr4 139404507 139404683 -44883979 - MIR SINE MIR -77 185 8 207 182 0 23 chr4 139405314 139405358 -44883304 + G-rich Low_complexity Low_complexity 3 45 0 506 273 105 0 chr4 139406017 139406160 -44882502 - MIR3 SINE MIR -25 183 26 835 148 16 0 chr4 139407435 139407563 -44881099 - AluJb SINE Alu -12 300 171 681 171 8 16 chr4 139408304 139408427 -44880235 + FLAM_C SINE Alu 1 122 -21 515 247 110 0 chr4 139409676 139409822 -44878840 + MIR SINE MIR 80 241 -21 196 339 60 85 chr4 139411283 139411543 -44877119 + L2 LINE L2 2459 2701 -613 1124 155 213 8 chr4 139411543 139411782 -44876880 + AluJo SINE Alu 1 288 -14 196 339 60 85 chr4 139411782 139412037 -44876625 + L2 LINE L2 2701 2961 -353 23 0 0 0 chr4 139412122 139412145 -44876517 + AT_rich Low_complexity Low_complexity 1 23 0 338 240 20 135 chr4 139412688 139412888 -44875774 - MER5A DNA MER1_type -5 184 8 21 0 0 0 chr4 139412907 139412928 -44875734 + AT_rich Low_complexity Low_complexity 1 21 0 289 310 78 26 chr4 139413074 139413190 -44875472 - L2 LINE L2 -9 3263 3142 377 270 52 26 chr4 139413615 139413730 -44874932 - L2 LINE L2 -7 3265 3148 1965 131 126 8 chr4 139414698 139414882 -44873780 - MSTA LTR MaLR -1 427 266 189 0 0 0 chr4 139414882 139414903 -44873759 + (GA)n Simple_repeat Simple_repeat 1 21 0 1965 131 126 8 chr4 139414903 139415100 -44873562 - MSTA LTR MaLR -162 266 1 185 65 32 0 chr4 139415663 139415694 -44872968 + (AGGTG)n Simple_repeat Simple_repeat 3 34 0 1451 199 3 20 chr4 139416072 139416368 -44872294 - AluJb SINE Alu -19 293 3 455 225 86 46 chr4 139416375 139416526 -44872136 + MIR SINE MIR 12 168 -94 936 235 118 46 chr4 139416624 139417165 -44871497 + MER20B DNA MER1_type 30 647 -136 21 0 0 0 chr4 139417481 139417502 -44871160 + AT_rich Low_complexity Low_complexity 1 21 0 351 0 0 0 chr4 139417622 139417661 -44871001 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr4 139418455 139418477 -44870185 + AT_rich Low_complexity Low_complexity 1 22 0 1418 153 153 4 chr4 139418726 139418988 -44869674 - AluJb SINE Alu -1 301 1 1878 174 30 3 chr4 139418990 139419323 -44869339 + MLT1A1 LTR MaLR 24 365 0 260 186 0 0 chr4 139419471 139419514 -44869148 + Alu SINE Alu 2 44 -259 985 129 347 4 chr4 139419514 139419739 -44868923 + AluJb SINE Alu 1 302 0 24 0 0 0 chr4 139419784 139419808 -44868854 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr4 139420450 139420482 -44868180 + AT_rich Low_complexity Low_complexity 1 32 0 341 120 20 0 chr4 139420932 139420982 -44867680 - Tigger6 DNA MER2_type -1032 51 1 1059 189 92 0 chr4 139421060 139421288 -44867374 - Tigger6b DNA MER2_type -1148 449 201 324 292 15 39 chr4 139421417 139421547 -44867115 - L1ME LINE L1 -582 5584 5458 27 49 0 0 chr4 139422073 139422114 -44866548 + AT_rich Low_complexity Low_complexity 1 41 0 22 88 0 0 chr4 139422304 139422361 -44866301 + AT_rich Low_complexity Low_complexity 1 57 0 5470 251 84 23 chr4 139423129 139423397 -44865265 + L1ME2 LINE L1 2444 2694 -3846 1717 172 21 3 chr4 139423397 139423688 -44864974 - AluJb SINE Alu -16 296 1 5470 251 84 23 chr4 139423688 139425503 -44863159 + L1ME2 LINE L1 2694 4661 -1879 258 32 0 0 chr4 139425503 139425534 -44863128 + (CA)n Simple_repeat Simple_repeat 2 32 0 5470 251 84 23 chr4 139425534 139425641 -44863021 + L1ME2 LINE L1 4661 4760 -1780 1066 211 51 51 chr4 139425641 139425997 -44862665 - THE1C LTR MaLR 0 375 20 1239 171 123 15 chr4 139426111 139426380 -44862282 - MSTA LTR MaLR -130 298 1 34 55 0 0 chr4 139426385 139426440 -44862222 + AT_rich Low_complexity Low_complexity 1 55 0 2702 228 72 26 chr4 139426450 139427331 -44861331 + L1ME2 LINE L1 4814 5734 -806 340 242 74 0 chr4 139427331 139427426 -44861236 + MER110 LTR ERV1 372 473 -18 22 0 0 0 chr4 139427657 139427679 -44860983 + AT_rich Low_complexity Low_complexity 1 22 0 755 167 56 0 chr4 139427734 139427860 -44860802 - FLAM_C SINE Alu 0 133 1 24 32 0 0 chr4 139428261 139428292 -44860370 + AT_rich Low_complexity Low_complexity 1 31 0 373 322 75 46 chr4 139429024 139429198 -44859464 + MIR3 SINE MIR 16 194 -14 228 258 0 48 chr4 139429326 139429388 -44859274 + MIR SINE MIR 201 259 -3 24 32 0 0 chr4 139429764 139429795 -44858867 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr4 139429989 139430011 -44858651 + AT_rich Low_complexity Low_complexity 1 22 0 2256 99 0 3 chr4 139430148 139430441 -44858221 - AluY SINE Alu -19 292 1 432 138 75 0 chr4 139430896 139430976 -44857686 - MER53 DNA DNA 0 189 104 7562 242 15 27 chr4 139431096 139433582 -44855080 + L1PA15-16 LINE L1 1735 4185 -2664 288 0 0 0 chr4 139434142 139434174 -44854488 + (A)n Simple_repeat Simple_repeat 1 32 0 4261 192 0 4 chr4 139434174 139435002 -44853660 + L1PA13 LINE L1 3072 3896 -2250 5682 118 14 13 chr4 139435011 139435740 -44852922 + L1PA13 LINE L1 4770 5499 -664 2217 119 0 10 chr4 139435740 139436051 -44852611 + AluSq SINE Alu 1 308 -5 5682 118 14 13 chr4 139436051 139436714 -44851948 + L1PA13 LINE L1 5499 6160 -3 25 65 0 0 chr4 139437129 139437175 -44851487 + AT_rich Low_complexity Low_complexity 1 46 0 515 285 54 8 chr4 139437933 139438175 -44850487 - L1M4 LINE L1 -3107 3039 2787 568 311 28 46 chr4 139440049 139440615 -44848047 + L1M4 LINE L1 3382 3937 -2209 1365 217 140 10 chr4 139440662 139440780 -44847882 + L1ME2 LINE L1 5901 6002 -556 2542 143 36 7 chr4 139440780 139441194 -44847468 - MSTB LTR MaLR 0 426 1 1365 217 140 10 chr4 139441194 139441582 -44847080 + L1ME2 LINE L1 6002 6514 -44 286 397 52 13 chr4 139441585 139441817 -44846845 + L2 LINE L2 2677 2917 -397 376 320 89 89 chr4 139441863 139442110 -44846552 + L2 LINE L2 3016 3262 -10 648 263 122 0 chr4 139442621 139442777 -44845885 - LTR33 LTR ERVL -346 175 1 2653 316 125 14 chr4 139443102 139444625 -44844037 - HERVL LTR ERVL -441 5213 3523 1309 322 85 8 chr4 139444669 139445188 -44843474 - HERVL LTR ERVL -2295 3469 2911 1118 316 49 15 chr4 139445169 139445577 -44843085 - HERVL LTR ERVL -3522 2242 1821 * 22 0 0 0 chr4 139445625 139445647 -44843015 + AT_rich Low_complexity Low_complexity 1 22 0 1547 154 138 3 chr4 139445982 139446300 -44842362 - MLT1A1 LTR MaLR 0 365 5 595 305 62 49 chr4 139446792 139447245 -44841417 - L1MC4a LINE L1 -1977 5831 5373 2046 70 0 12 chr4 139447257 139447513 -44841149 - AluY SINE Alu -20 291 39 418 252 53 88 chr4 139447520 139447861 -44840801 - L1MC4a LINE L1 -824 5322 4994 270 0 0 0 chr4 139447867 139447897 -44840765 + (TG)n Simple_repeat Simple_repeat 2 31 0 2289 137 28 19 chr4 139447970 139448329 -44840333 - THE1B LTR MaLR -2 362 1 9099 100 33 1 chr4 139448329 139449588 -44839074 - THE1B-int LTR MaLR 0 1580 282 577 255 36 83 chr4 139449587 139449730 -44838932 - L1MC4a LINE L1 -1162 4984 4859 * 2437 143 73 5 chr4 139449730 139450155 -44838507 - MSTB2 LTR MaLR 0 457 4 577 255 36 83 chr4 139450155 139450289 -44838373 - L1MC4a LINE L1 -1287 4859 4720 323 266 85 0 chr4 139450785 139450879 -44837783 + MIR SINE MIR 50 151 -111 1797 153 3 37 chr4 139451012 139451333 -44837329 - AluJb SINE Alu 0 312 3 269 308 149 9 chr4 139452603 139452710 -44835952 + MIR SINE MIR 14 135 -127 191 253 157 0 chr4 139454633 139454716 -44833946 - MIR3 SINE MIR -5 203 108 2600 59 0 0 chr4 139454997 139455303 -44833359 + AluSx SINE Alu 1 306 -6 723 170 122 0 chr4 139455304 139455451 -44833211 - Tigger1 DNA MER2_type -2253 165 1 261 173 0 19 chr4 139455443 139455456 -44833206 + MLT2B2 LTR ERVL 463 475 -40 * 360 0 0 0 chr4 139455456 139455496 -44833166 + (CA)n Simple_repeat Simple_repeat 2 41 0 261 173 0 19 chr4 139455496 139455534 -44833128 + MLT2B2 LTR ERVL 475 513 -2 575 279 97 59 chr4 139455537 139455774 -44832888 - MLT1J2 LTR MaLR -123 327 82 10362 193 48 14 chr4 139456399 139458009 -44830653 + L1MB3 LINE L1 2629 4183 -2000 1723 176 7 7 chr4 139458009 139458305 -44830357 + AluJo SINE Alu 1 296 -16 10362 193 48 14 chr4 139458305 139460052 -44828610 + L1MB3 LINE L1 4183 6100 -83 21 71 0 0 chr4 139461385 139461427 -44827235 + AT_rich Low_complexity Low_complexity 1 42 0 41805 48 22 3 chr4 139461562 139467600 -44821062 - L1PA2 LINE L1 -3 6152 1 509 321 47 11 chr4 139469561 139469751 -44818911 + MIR SINE MIR 5 201 -61 331 272 87 19 chr4 139470761 139470864 -44817798 - MIR SINE MIR -98 164 55 26 0 0 0 chr4 139471437 139471463 -44817199 + AT_rich Low_complexity Low_complexity 1 26 0 339 179 0 0 chr4 139471975 139472042 -44816620 + (TA)n Simple_repeat Simple_repeat 2 68 0 251 188 43 29 chr4 139472042 139472111 -44816551 - LTR66 LTR ERVL -171 439 370 5416 179 18 7 chr4 139472126 139473632 -44815030 - L1P5 LINE L1 -514 5640 4123 21 0 0 0 chr4 139475340 139475361 -44813301 + AT_rich Low_complexity Low_complexity 1 21 0 2831 13 0 0 chr4 139475460 139475769 -44812893 + AluYa5 SINE Alu 2 310 -1 1807 158 3 29 chr4 139475981 139476297 -44812365 + AluJb SINE Alu 2 309 -3 2337 79 6 25 chr4 139476550 139476865 -44811797 + AluY SINE Alu 1 309 -2 253 239 80 23 chr4 139476882 139476970 -44811692 - MER103 DNA DNA -66 100 8 504 267 27 59 chr4 139477606 139477793 -44810869 - MIR SINE MIR -71 191 11 885 242 9 35 chr4 139479695 139479926 -44808736 - MIR SINE MIR -34 228 4 210 294 0 0 chr4 139480927 139480995 -44807667 + A-rich Low_complexity Low_complexity 4 71 0 27 0 0 0 chr4 139482297 139482324 -44806338 + AT_rich Low_complexity Low_complexity 1 27 0 2003 87 8 4 chr4 139482413 139482679 -44805983 + AluSx SINE Alu 40 306 -6 675 37 0 0 chr4 139483151 139483233 -44805429 + (TA)n Simple_repeat Simple_repeat 2 83 0 2216 112 0 3 chr4 139483238 139483532 -44805130 + AluSq SINE Alu 1 293 -20 311 169 34 0 chr4 139483544 139483603 -44805059 + L2 LINE L2 3251 3311 -2 362 316 107 23 chr4 139483608 139483785 -44804877 + L1MC4a LINE L1 5867 6058 -1750 2143 103 20 7 chr4 139484650 139484952 -44803710 + AluSc SINE Alu 1 306 -3 1552 139 13 0 chr4 139484959 139485197 -44803465 - AluSg SINE Alu -69 241 1 263 309 202 0 chr4 139485407 139485501 -44803161 + L2 LINE L2 3122 3234 -38 24 0 0 0 chr4 139486896 139486920 -44801742 + AT_rich Low_complexity Low_complexity 1 24 0 183 156 0 0 chr4 139488578 139488610 -44800052 + (CATATA)n Simple_repeat Simple_repeat 2 33 0 28 61 0 0 chr4 139489184 139489233 -44799429 + AT_rich Low_complexity Low_complexity 1 49 0 25 51 0 0 chr4 139489781 139489820 -44798842 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr4 139491612 139491635 -44797027 + AT_rich Low_complexity Low_complexity 1 23 0 1467 181 53 30 chr4 139493823 139494127 -44794535 - AluJo SINE Alu -1 311 1 655 240 132 42 chr4 139494608 139494895 -44793767 + MER46C DNA MER2_type 20 332 -6 1402 132 184 7 chr4 139495008 139495318 -44793344 - MLT1A1 LTR MaLR 0 365 1 1221 160 329 9 chr4 139495376 139495726 -44792936 - MER31B LTR ERV1 0 466 5 593 265 103 40 chr4 139496876 139497178 -44791484 + MLT1J1 LTR MaLR 1 321 -125 2376 87 10 6 chr4 139499599 139499911 -44788751 + AluSq SINE Alu 1 313 0 270 336 57 14 chr4 139500604 139500744 -44787918 - MIR SINE MIR -50 212 67 239 335 100 20 chr4 139501215 139501466 -44787196 + L1ME LINE L1 5481 5751 -370 482 192 10 10 chr4 139501515 139501614 -44787048 - FLAM_A SINE Alu -9 133 35 241 255 0 0 chr4 139502189 139502240 -44786422 - L2 LINE L2 -2 3270 3220 274 263 61 10 chr4 139503558 139503657 -44785005 - MER91C DNA MER1_type -35 105 2 911 241 70 4 chr4 139504575 139504816 -44783846 + MIR SINE MIR 2 258 -4 340 286 92 34 chr4 139504852 139504971 -44783691 - MIR3 SINE MIR -30 178 53 301 261 159 67 chr4 139505158 139505353 -44783309 - MIR SINE MIR -44 218 6 308 278 120 96 chr4 139506209 139506583 -44782079 + L1M2 LINE L1 855 1237 -5612 485 247 86 19 chr4 139507551 139507773 -44780889 + L1MEd LINE L1 1105 1375 -4863 2979 133 31 47 chr4 139507808 139508385 -44780277 - L1MB2 LINE L1 -2 6169 5602 249 229 48 0 chr4 139508495 139508566 -44780096 + L1P4 LINE L1 5493 5569 -596 358 304 125 27 chr4 139508595 139508891 -44779771 + L1M4 LINE L1 4912 5236 -910 269 278 46 35 chr4 139508899 139508912 -44779750 + L1P5 LINE L1 5269 5280 -871 2418 55 17 0 chr4 139508912 139509205 -44779457 + AluY SINE Alu 1 298 -13 269 278 46 35 chr4 139509205 139509364 -44779298 + L1P5 LINE L1 5280 5443 -708 541 285 29 0 chr4 139509519 139509656 -44779006 + MER5B DNA MER1_type 8 148 -30 1229 238 15 12 chr4 139509688 139510028 -44778634 + L1MEd LINE L1 2582 2922 -3207 243 77 26 0 chr4 139510040 139510079 -44778583 - MER4C LTR ERV1 -373 92 53 932 121 7 0 chr4 139510089 139510230 -44778432 + AluSp/q SINE Alu 172 313 0 2654 135 26 46 chr4 139510393 139510897 -44777765 + L1MA8 LINE L1 5783 6276 -15 869 221 108 4 chr4 139510914 139511154 -44777508 + Charlie8 DNA MER1_type 378 642 -1775 209 304 130 10 chr4 139511290 139511497 -44777165 - L2 LINE L2 -1117 2197 1966 2286 202 87 7 chr4 139511575 139512114 -44776548 - MER119 DNA MER1_type 0 583 2 389 314 114 11 chr4 139512825 139513000 -44775662 + MIR SINE MIR 47 239 -23 282 200 15 0 chr4 139513077 139513142 -44775520 + MIR SINE MIR 57 122 -86 270 207 0 0 chr4 139513148 139513206 -44775456 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 22 35 0 0 chr4 139514951 139514980 -44773682 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr4 139515121 139515150 -44773512 + AT_rich Low_complexity Low_complexity 1 29 0 275 229 229 9 chr4 139515683 139515788 -44772874 + MIR SINE MIR 63 190 -72 202 170 19 57 chr4 139515824 139515877 -44772785 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 * 209 271 0 12 chr4 139515856 139515941 -44772721 + (TAAA)n Simple_repeat Simple_repeat 4 87 0 1177 286 113 16 chr4 139516824 139517247 -44771415 - LTR16B LTR ERVL 0 464 1 700 249 12 17 chr4 139517389 139517562 -44771100 - MIR SINE MIR -85 177 6 2312 70 0 27 chr4 139517826 139518125 -44770537 + AluSg SINE Alu 14 304 -6 1620 226 9 41 chr4 139518228 139518431 -44770231 - L1M4 LINE L1 -1069 5077 4869 18709 33 1 0 chr4 139518431 139521337 -44767325 - L1PA4 LINE L1 0 6155 3262 1620 226 9 41 chr4 139521337 139521594 -44767068 - L1M4 LINE L1 -1277 4869 4632 * 5112 175 7 12 chr4 139521590 139522702 -44765960 + L1MB5 LINE L1 5071 6173 -1 611 249 204 5 chr4 139523490 139523691 -44764971 - MIR SINE MIR -3 259 19 396 154 0 0 chr4 139523890 139523955 -44764707 - L1MB1 LINE L1 -289 5879 5815 898 161 0 0 chr4 139523961 139524091 -44764571 - FLAM_C SINE Alu -3 130 1 1445 154 21 8 chr4 139524092 139524332 -44764330 + L1MB1 LINE L1 5925 6167 -1 1453 139 29 41 chr4 139524738 139524982 -44763680 + AluJo SINE Alu 47 287 -25 2306 224 111 106 chr4 139525337 139526234 -44762428 - L2 LINE L2 -3 3310 2419 2180 120 0 25 chr4 139526234 139526551 -44762111 + AluSc SINE Alu 1 309 0 2306 224 111 106 chr4 139526551 139526691 -44761971 - L2 LINE L2 -894 2419 2281 2481 151 57 0 chr4 139526691 139527096 -44761566 + MSTA LTR MaLR 1 428 0 2306 224 111 106 chr4 139527096 139527412 -44761250 - L2 LINE L2 -1032 2281 1926 422 267 200 13 chr4 139527828 139527978 -44760684 + MER91A DNA MER1_type 2 179 -17 6176 127 31 11 chr4 139528459 139529983 -44758679 - L1PA16 LINE L1 0 6166 4618 276 179 295 0 chr4 139530197 139530292 -44758370 - L1ME3A LINE L1 -19 6151 6029 183 345 12 0 chr4 139530740 139530824 -44757838 - MIR SINE MIR 0 262 178 576 224 95 0 chr4 139531276 139531392 -44757270 - FLAM_A SINE Alu -6 127 1 213 238 127 0 chr4 139532295 139532358 -44756304 - L2 LINE L2 -46 3226 3156 218 29 59 0 chr4 139532438 139532472 -44756190 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 7310 231 45 26 chr4 139532517 139535461 -44753201 - L1MC3 LINE L1 -743 5821 3616 2479 137 91 13 chr4 139535461 139535856 -44752806 - MSTB LTR MaLR 0 426 1 7310 231 45 26 chr4 139535856 139535952 -44752710 - L1MC3 LINE L1 -2948 3616 3523 4345 170 10 22 chr4 139535960 139536743 -44751919 - MLT1A1-int LTR MaLR -961 774 1 1341 193 77 51 chr4 139536743 139537096 -44751566 - MLT1A1 LTR MaLR 0 365 4 1804 263 45 81 chr4 139537100 139538384 -44750278 - L1MC3 LINE L1 -4851 1194 354 4334 76 26 2 chr4 139538384 139538925 -44749737 - MER41A LTR ERV1 0 554 1 1804 263 45 81 chr4 139538925 139539240 -44749422 - L1MC3 LINE L1 -5691 354 29 2160 122 3 0 chr4 139539520 139539814 -44748848 + AluSp SINE Alu 1 295 -18 466 82 0 0 chr4 139540018 139540079 -44748583 - LTR2B LTR ERV1 0 490 430 4435 16 0 0 chr4 139540079 139540818 -44747844 - L1PA2 LINE L1 -412 5743 5005 3591 18 0 0 chr4 139540819 139541206 -44747456 + L1PA2 LINE L1 5762 6148 -7 209 0 23 68 chr4 139541210 139541254 -44747408 + (TAAAA)n Simple_repeat Simple_repeat 4 45 0 1753 196 68 28 chr4 139541280 139541677 -44746985 - LTR2B LTR ERV1 -46 444 32 383 282 191 9 chr4 139543400 139543620 -44745042 + MIR SINE MIR 3 262 0 1520 179 14 28 chr4 139545070 139545360 -44743302 + AluJo SINE Alu 6 291 -21 28 0 0 0 chr4 139545360 139545388 -44743274 + AT_rich Low_complexity Low_complexity 1 28 0 714 277 74 21 chr4 139545921 139546163 -44742499 - MIR SINE MIR 0 262 8 920 154 30 53 chr4 139546550 139546719 -44741943 - FRAM SINE Alu -14 162 1 330 258 21 0 chr4 139548604 139548697 -44739965 + MIR3 SINE MIR 104 198 -10 1536 202 109 3 chr4 139550543 139550865 -44737797 - MLT1A1 LTR MaLR -9 356 1 444 303 80 12 chr4 139551028 139551190 -44737472 + LTR33A LTR ERVL 65 237 -286 256 261 109 0 chr4 139551248 139551386 -44737276 + LTR33A LTR ERVL 365 517 -6 2868 102 3 0 chr4 139551401 139551764 -44736898 + THE1B LTR MaLR 1 364 0 250 336 77 63 chr4 139553589 139553875 -44734787 + L2 LINE L2 2981 3270 -2 1890 167 0 6 chr4 139555665 139555977 -44732685 + AluJb SINE Alu 1 310 -2 629 310 62 0 chr4 139557657 139557899 -44730763 + MLT1J1 LTR MaLR 21 277 -169 232 222 50 61 chr4 139557929 139558028 -44730634 + MLT1J2 LTR MaLR 353 450 0 543 148 0 0 chr4 139558582 139558670 -44729992 + L1MA3 LINE L1 6218 6305 0 31 20 0 20 chr4 139558670 139558681 -44729981 + AT_rich Low_complexity Low_complexity 1 11 -37 1768 172 0 7 chr4 139558681 139558971 -44729691 + AluJo SINE Alu 1 288 -24 31 20 0 20 chr4 139558971 139559008 -44729654 + AT_rich Low_complexity Low_complexity 11 48 0 468 280 20 20 chr4 139561680 139561830 -44726832 - MER5B DNA MER1_type 0 178 29 2442 34 40 7 chr4 139561838 139562135 -44726527 - AluY SINE Alu 0 311 5 951 257 82 59 chr4 139563996 139564435 -44724227 + LTR16B LTR ERVL 3 451 -13 1673 321 50 27 chr4 139564444 139565310 -44723352 + HERV16 LTR ERVL 7 897 -4099 2044 157 0 0 chr4 139565310 139565609 -44723053 + AluSx SINE Alu 1 299 -13 1673 321 50 27 chr4 139565609 139565669 -44722993 + HERV16 LTR ERVL 897 954 -4042 1056 290 99 3 chr4 139565675 139566037 -44722625 + HERV16 LTR ERVL 1612 2008 -2988 486 302 24 0 chr4 139566021 139566190 -44722472 + HERV16 LTR ERVL 2363 2535 -3119 * 695 306 60 26 chr4 139566252 139566927 -44721735 + HERV16 LTR ERVL 2655 3368 -2286 2061 121 0 7 chr4 139566954 139567264 -44721398 - AluSx SINE Alu 0 312 5 938 203 68 32 chr4 139567495 139567746 -44720916 - LTR40b LTR ERVL -6 456 197 656 345 76 29 chr4 139567746 139568430 -44720232 + HERV16 LTR ERVL 3911 4626 -1138 3935 137 15 25 chr4 139569062 139569779 -44718883 + L1PBa LINE L1 3 712 -6151 22 0 0 0 chr4 139569892 139569914 -44718748 + AT_rich Low_complexity Low_complexity 1 22 0 287 295 65 46 chr4 139570626 139570805 -44717857 - MIR3 SINE MIR -73 189 14 943 219 39 15 chr4 139570853 139571058 -44717604 + MER63A DNA MER1_type 1 210 0 2088 167 82 7 chr4 139572045 139572471 -44716191 + Tigger6b DNA MER2_type 6 463 -1134 * 2703 175 54 8 chr4 139572452 139573046 -44715616 + Tigger6b DNA MER2_type 977 1597 0 283 340 56 35 chr4 139573127 139573271 -44715391 + MIR SINE MIR 6 152 -110 28 79 0 0 chr4 139574287 139574350 -44714312 + AT_rich Low_complexity Low_complexity 1 63 0 373 284 102 48 chr4 139575422 139576010 -44712652 - L1MC5 LINE L1 -44 7917 7298 299 338 46 38 chr4 139576815 139577055 -44711607 + L2 LINE L2 2832 3073 -199 1755 164 0 23 chr4 139577141 139577445 -44711217 - AluJb SINE Alu -15 297 1 531 0 0 0 chr4 139577448 139577481 -44711181 + (TTCC)n Simple_repeat Simple_repeat 1 92 0 531 0 0 0 chr4 139577481 139577540 -44711122 + (TTCC)n Simple_repeat Simple_repeat 2 60 0 23 78 0 0 chr4 139578325 139578376 -44710286 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr4 139579102 139579123 -44709539 + AT_rich Low_complexity Low_complexity 1 21 0 279 224 31 71 chr4 139579195 139579341 -44709321 - HAL1b LINE L1 -2 6119 1213 431 265 36 59 chr4 139579404 139579657 -44709005 - L1MC4a LINE L1 -1857 5951 5705 1019 261 16 4 chr4 139579678 139579923 -44708739 - MIR SINE MIR -13 249 2 1753 166 3 14 chr4 139579940 139580251 -44708411 - AluJo SINE Alu 0 312 5 416 241 43 0 chr4 139580265 139580381 -44708281 - L1MC4a LINE L1 -440 5681 5561 383 245 101 75 chr4 139580407 139580595 -44708067 + MIR SINE MIR 1 193 -69 244 314 28 3 chr4 139581742 139581852 -44706810 + MIR SINE MIR 45 156 -52 902 267 36 36 chr4 139582029 139582057 -44706605 - L1MC4a LINE L1 -748 5398 5371 2397 101 0 0 chr4 139582057 139582365 -44706297 - AluSx SINE Alu -4 308 1 902 267 36 36 chr4 139582365 139582786 -44705876 - L1MC4a LINE L1 -774 5372 4949 313 298 218 34 chr4 139582913 139583262 -44705400 + L2 LINE L2 2899 3311 -2 301 247 82 0 chr4 139583597 139583682 -44704980 + L2 LINE L2 3203 3294 -19 466 272 41 30 chr4 139584776 139584945 -44703717 + MIR SINE MIR 83 253 -9 811 183 6 57 chr4 139585002 139585177 -44703485 - MER58B DNA MER1_type 0 341 176 194 367 0 55 chr4 139585279 139585388 -44703274 + L2 LINE L2 2954 3056 -216 23 78 0 0 chr4 139585986 139586037 -44702625 + AT_rich Low_complexity Low_complexity 1 51 0 22 70 0 0 chr4 139586054 139586097 -44702565 + AT_rich Low_complexity Low_complexity 1 43 0 1636 240 41 25 chr4 139586295 139586932 -44701730 + L1ME1 LINE L1 4684 5330 -816 847 175 102 12 chr4 139586933 139586982 -44701680 + AluJo SINE Alu 72 115 -197 528 16 0 0 chr4 139586982 139587043 -44701619 + (CA)n Simple_repeat Simple_repeat 2 62 0 847 175 102 12 chr4 139587043 139587159 -44701503 + AluJo SINE Alu 115 252 -60 2232 208 71 25 chr4 139587162 139587300 -44701362 + L1ME1 LINE L1 5331 5461 -705 1767 150 15 0 chr4 139587300 139587566 -44701096 + AluJo SINE Alu 22 291 -21 2232 208 71 25 chr4 139587566 139588099 -44700563 + L1ME1 LINE L1 5461 6033 -133 281 329 49 63 chr4 139588134 139588420 -44700242 - L2 LINE L2 -675 2639 2358 186 78 16 78 chr4 139588837 139588901 -44699761 + (TA)n Simple_repeat Simple_repeat 1 60 0 377 276 29 12 chr4 139588903 139589073 -44699589 + L1ME4a LINE L1 5936 6108 -13 335 282 11 44 chr4 139589085 139589266 -44699396 + L1ME LINE L1 5614 5788 -333 325 302 54 8 chr4 139589310 139589439 -44699223 + MIR SINE MIR 72 206 -56 4857 150 65 46 chr4 139589440 139590722 -44697940 + L1M2 LINE L1 4287 5580 -711 7513 34 1 1 chr4 139590722 139591819 -44696843 + L1PA3 LINE L1 5058 6155 0 4857 150 65 46 chr4 139591819 139591915 -44696747 + L1M2 LINE L1 5580 5673 -618 950 218 0 6 chr4 139591920 139592094 -44696568 + AluJb SINE Alu 140 312 0 991 252 106 66 chr4 139592193 139592613 -44696049 + L2 LINE L2 2706 3157 -156 1545 49 74 0 chr4 139592613 139592816 -44695846 - L1PA7 LINE L1 -3 6151 5934 991 252 106 66 chr4 139592816 139592980 -44695682 + L2 LINE L2 3157 3313 0 1051 134 91 40 chr4 139593683 139593936 -44694726 - Charlie5 DNA MER1_type 0 2616 2351 636 204 58 37 chr4 139593933 139594124 -44694538 - Charlie5 DNA MER1_type -2413 199 5 * 465 256 124 0 chr4 139594133 139594262 -44694400 + MER5A DNA MER1_type 39 183 -6 232 360 23 0 chr4 139594289 139594375 -44694287 + L2 LINE L2 2554 2641 -673 1906 153 130 18 chr4 139594947 139595332 -44693330 + MSTA LTR MaLR 1 428 0 555 290 126 4 chr4 139595883 139596114 -44692548 - L1ME3A LINE L1 -281 5958 5700 336 293 253 9 chr4 139596220 139596445 -44692217 - L1ME3A LINE L1 -521 5710 5431 345 227 116 44 chr4 139596451 139596483 -44692179 - L1ME3A LINE L1 -3778 2437 2409 3039 163 16 0 chr4 139596483 139596997 -44691665 + LTR45 LTR ERV1 4 525 0 345 227 116 44 chr4 139596997 139597189 -44691473 - L1ME3A LINE L1 -3806 2409 2197 432 274 58 40 chr4 139597196 139597419 -44691243 - L1ME3A LINE L1 -4309 2087 1861 301 301 110 19 chr4 139598166 139598381 -44690281 + MLT1H LTR MaLR 1 233 -316 263 244 7 104 chr4 139598568 139598666 -44689996 + MLT1G1 LTR MaLR 447 530 -65 1691 121 4 0 chr4 139598666 139598898 -44689764 + AluSg SINE Alu 64 296 -14 263 244 7 104 chr4 139598898 139598934 -44689728 + MLT1G1 LTR MaLR 530 568 -27 2293 75 0 0 chr4 139599339 139599617 -44689045 - AluY SINE Alu -33 278 1 839 273 191 9 chr4 139600407 139600726 -44687936 + L2 LINE L2 2069 2445 -869 992 184 39 10 chr4 139600730 139600936 -44687726 + MER20 DNA MER1_type 7 218 -1 958 250 188 13 chr4 139600972 139601466 -44687196 + L2 LINE L2 2659 3239 -74 364 221 23 122 chr4 139601526 139601657 -44687005 - L2 LINE L2 0 3313 3196 21 43 0 22 chr4 139601726 139601751 -44686911 + AT_rich Low_complexity Low_complexity 1 26 -19 2182 114 7 16 chr4 139601751 139602059 -44686603 - AluSg SINE Alu -4 306 2 21 43 0 22 chr4 139602059 139602079 -44686583 + AT_rich Low_complexity Low_complexity 26 45 0 1940 110 24 14 chr4 139602583 139602873 -44685789 + AluSq SINE Alu 1 293 -20 581 146 105 23 chr4 139603359 139603530 -44685132 - MER53 DNA DNA 0 189 5 384 345 62 23 chr4 139604809 139605067 -44683595 - LTR33 LTR ERVL -253 268 1 207 363 88 6 chr4 139605099 139605259 -44683403 + L2 LINE L2 2258 2430 -884 1291 100 130 0 chr4 139605800 139605903 -44682759 + MER30 DNA MER1_type 1 89 -141 243 61 0 0 chr4 139605903 139605936 -44682726 + (CA)n Simple_repeat Simple_repeat 2 34 0 1291 100 130 0 chr4 139605936 139606032 -44682630 + MER30 DNA MER1_type 89 226 -4 1432 139 27 0 chr4 139606398 139606656 -44682006 + L1MA7 LINE L1 6026 6290 -1 182 286 36 36 chr4 139608083 139608167 -44680495 + MIR SINE MIR 71 154 -108 3095 101 43 12 chr4 139608212 139608697 -44679965 + L1MA4A LINE L1 5792 6291 -12 209 176 0 0 chr4 139608697 139608752 -44679910 + (CA)n Simple_repeat Simple_repeat 1 55 0 261 224 0 15 chr4 139609108 139609175 -44679487 + HsTC2 DNA Tc2 14 79 -1819 262 254 0 0 chr4 139609282 139609337 -44679325 - L2 LINE L2 -17 3296 3242 342 331 119 19 chr4 139609433 139609593 -44679069 + L2 LINE L2 3008 3183 -89 2253 128 0 0 chr4 139609598 139609910 -44678752 - AluSx SINE Alu 0 312 1 885 199 57 17 chr4 139610395 139610571 -44678091 - MER5A DNA MER1_type -6 183 1 196 317 61 24 chr4 139610682 139610764 -44677898 - L3b LINE CR1 -134 1449 1365 2305 101 13 0 chr4 139610992 139611298 -44677364 - AluSg SINE Alu 0 310 1 383 303 153 32 chr4 139611422 139611801 -44676861 + MLT1H LTR MaLR 123 547 -2 388 311 105 28 chr4 139611955 139612203 -44676459 + MLT1K LTR MaLR 322 588 0 529 319 76 32 chr4 139612353 139612538 -44676124 + MER91A DNA MER1_type 1 193 -3 882 216 0 12 chr4 139614140 139614302 -44674360 + FRAM SINE Alu 2 161 -15 4061 65 4 3 chr4 139614304 139620375 -44668287 + L1PA5 LINE L1 3 6149 -5 254 292 53 18 chr4 139621413 139621526 -44667136 - HERVL18 LTR ERVL -3747 2300 2184 4724 149 43 25 chr4 139621950 139622837 -44665825 + MER4D LTR ERV1 1 903 0 1790 168 40 3 chr4 139623128 139623425 -44665237 - AluJb SINE Alu 0 312 5 10707 33 1 0 chr4 139624233 139625580 -44663082 + L1P LINE L1 3699 5047 -1099 646 271 18 22 chr4 139625686 139625963 -44662699 + L1M4 LINE L1 2664 2939 -3207 903 151 0 0 chr4 139626024 139626163 -44662499 + AluSp/q SINE Alu 172 310 -3 3013 114 26 2 chr4 139627072 139627526 -44661136 + MER4C LTR ERV1 1 465 0 29 47 0 0 chr4 139627607 139627650 -44661012 + AT_rich Low_complexity Low_complexity 1 43 0 2146 121 0 3 chr4 139628346 139628636 -44660026 + AluSc SINE Alu 1 289 -20 225 0 0 0 chr4 139628762 139628787 -44659875 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 1987 131 4 0 chr4 139628825 139629100 -44659562 - AluSx SINE Alu -36 276 1 198 103 0 0 chr4 139629824 139629853 -44658809 + (A)n Simple_repeat Simple_repeat 1 29 0 1225 214 103 16 chr4 139630010 139630035 -44658627 - LTR40c LTR ERVL 0 465 444 16595 119 26 39 chr4 139630035 139632789 -44655873 - Tigger2 DNA MER2_type 0 2718 1 1225 214 103 16 chr4 139632789 139633151 -44655511 - LTR40c LTR ERVL -21 444 44 2127 130 10 0 chr4 139633488 139633795 -44654867 + AluSx SINE Alu 1 310 -2 1820 173 21 0 chr4 139634497 139634786 -44653876 - AluJb SINE Alu -17 295 1 23 33 0 0 chr4 139635313 139635343 -44653319 + AT_rich Low_complexity Low_complexity 1 30 0 249 294 137 10 chr4 139635377 139635479 -44653183 + L2 LINE L2 3199 3313 0 305 286 163 14 chr4 139636065 139636212 -44652450 - MIR3 SINE MIR -3 205 37 248 239 116 36 chr4 139636401 139636539 -44652123 + MLT1H1-int LTR MaLR 1574 1722 -13 911 274 80 31 chr4 139636569 139637118 -44651544 + MLT1H1 LTR MaLR 1 555 0 1101 149 36 0 chr4 139637532 139637727 -44650935 - MER105 DNA DNA -2 202 1 412 286 62 9 chr4 139637771 139637883 -44650779 - MIR SINE MIR -133 129 12 2091 112 0 14 chr4 139639005 139639319 -44649343 + AluSx SINE Alu 1 310 0 1815 241 122 2 chr4 139639436 139640025 -44648637 + L1MC4 LINE L1 7242 7901 -141 582 262 165 10 chr4 139640761 139640967 -44647695 + MIR SINE MIR 25 262 0 370 65 32 0 chr4 139641020 139641082 -44647580 + (TA)n Simple_repeat Simple_repeat 1 64 0 1362 114 59 0 chr4 139641082 139641301 -44647361 - MLT2A2 LTR ERVL -221 232 1 207 0 0 0 chr4 139641746 139641769 -44646893 + (A)n Simple_repeat Simple_repeat 1 23 0 2206 81 47 7 chr4 139642582 139642879 -44645783 + AluSc SINE Alu 1 309 0 2274 111 0 0 chr4 139645065 139645371 -44643291 - AluSq SINE Alu -7 306 1 528 281 156 6 chr4 139645434 139645649 -44643013 - MIR SINE MIR -10 252 7 197 241 17 52 chr4 139645672 139645730 -44642932 + L2 LINE L2 3208 3263 -9 512 316 113 45 chr4 139645932 139646312 -44642350 - L2 LINE L2 -50 3222 2817 513 310 176 13 chr4 139646414 139646807 -44641855 - L2 LINE L2 -626 2688 2232 502 295 57 49 chr4 139646848 139647214 -44641448 + Charlie8 DNA MER1_type 29 397 -2020 2647 142 13 0 chr4 139647214 139647673 -44640989 + L1M2 LINE L1 5300 5764 -527 7294 31 8 0 chr4 139647779 139649157 -44639505 - L1PA4 LINE L1 -11 6144 4756 3550 16 0 0 chr4 139649157 139649590 -44639072 + L1PA4 LINE L1 4325 4757 -1389 3496 43 0 5 chr4 139649588 139650033 -44638629 - L1P2 LINE L1 -371 5784 5342 * 712 296 51 36 chr4 139651167 139651502 -44637160 + L2 LINE L2 2848 3187 -126 1261 131 88 39 chr4 139654026 139654332 -44634330 + MER33 DNA MER1_type 4 324 0 288 274 21 11 chr4 139655887 139655982 -44632680 - MLT1H LTR MaLR 0 549 454 279 208 14 28 chr4 139656135 139656207 -44632455 - MLT1H LTR MaLR -375 174 104 30 59 0 0 chr4 139656480 139656531 -44632131 + AT_rich Low_complexity Low_complexity 1 51 0 663 196 140 0 chr4 139657041 139657184 -44631478 - MER5A DNA MER1_type -1 188 26 1046 296 86 29 chr4 139657550 139658026 -44630636 + L2 LINE L2 2811 3313 0 428 264 187 6 chr4 139658871 139659053 -44629609 + MIR SINE MIR 46 260 -2 3045 253 97 15 chr4 139659690 139660160 -44628502 + L1ME2 LINE L1 3309 3739 -2407 2046 143 0 7 chr4 139660160 139660460 -44628202 - AluSx SINE Alu -14 298 1 3045 253 97 15 chr4 139660460 139661257 -44627405 + L1ME2 LINE L1 3739 4680 -1466 1712 217 143 28 chr4 139661312 139662411 -44626251 + L1ME2 LINE L1 4797 6018 -146 227 91 0 0 chr4 139662413 139662446 -44626216 + MER3 DNA MER1_type 16 48 -161 356 208 94 0 chr4 139662452 139662548 -44626114 + L1ME2 LINE L1 6060 6164 0 208 294 39 8 chr4 139662557 139662658 -44626004 + MIR SINE MIR 6 108 -100 205 321 60 0 chr4 139662673 139662757 -44625905 - L2 LINE L2 -4 3309 3221 303 28 0 0 chr4 139663127 139663163 -44625499 + (TC)n Simple_repeat Simple_repeat 1 36 0 273 87 0 22 chr4 139663163 139663209 -44625453 - MER95 LTR ERV -382 49 5 * 312 176 108 10 chr4 139663203 139663305 -44625357 + MER95 LTR ERV 320 431 0 381 250 258 23 chr4 139663896 139664028 -44624634 - MIR3 SINE MIR -21 187 25 281 352 69 60 chr4 139664096 139664312 -44624350 + L2 LINE L2 2997 3214 -58 25 51 0 0 chr4 139665369 139665408 -44623254 + AT_rich Low_complexity Low_complexity 1 39 0 50 51 0 0 chr4 139665727 139665805 -44622857 + AT_rich Low_complexity Low_complexity 1 78 0 404 342 89 0 chr4 139666106 139666264 -44622398 - MIR3 SINE MIR -7 201 30 344 267 50 0 chr4 139666439 139666540 -44622122 + MIR SINE MIR 132 237 -25 181 303 45 67 chr4 139666600 139666689 -44621973 + L3 LINE CR1 172 258 -1319 2228 76 52 0 chr4 139667341 139667631 -44621031 - AluY SINE Alu -6 305 1 1933 146 38 0 chr4 139668457 139668745 -44619917 + AluJo SINE Alu 1 299 -13 279 333 43 0 chr4 139670104 139670221 -44618441 + L3b LINE CR1 1268 1389 -194 485 327 121 54 chr4 139672431 139672878 -44615784 + L2 LINE L2 2607 3089 -183 261 292 79 34 chr4 139672839 139672928 -44615734 - L2 LINE L2 -20 3252 3160 * 845 305 116 22 chr4 139672926 139673477 -44615185 + L2 LINE L2 1687 2289 -1025 5973 39 0 0 chr4 139673764 139674475 -44614187 + L1PA5 LINE L1 5436 6146 -8 21 0 0 0 chr4 139674505 139674526 -44614136 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr4 139674570 139674607 -44614055 + AT_rich Low_complexity Low_complexity 1 37 0 535 250 65 0 chr4 139675561 139675729 -44612933 - L1MB7 LINE L1 -7 6177 5999 473 253 77 44 chr4 139676612 139676794 -44611868 + MIR SINE MIR 70 257 -5 551 202 0 112 chr4 139676835 139676883 -44611779 - L1MA10 LINE L1 -3 6331 6284 692 243 50 79 chr4 139676883 139677299 -44611363 - L1ME1 LINE L1 -23 6143 5740 189 0 0 0 chr4 139677343 139677364 -44611298 + (TG)n Simple_repeat Simple_repeat 2 22 0 1673 202 26 3 chr4 139677667 139677969 -44610693 - AluJb SINE Alu -1 311 3 21 0 0 0 chr4 139679897 139679918 -44608744 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 139680020 139680041 -44608621 + AT_rich Low_complexity Low_complexity 1 21 0 237 65 0 0 chr4 139682144 139682175 -44606487 + (TG)n Simple_repeat Simple_repeat 2 32 0 437 269 168 26 chr4 139682264 139682954 -44605708 + L1M4 LINE L1 3005 3790 -2356 358 242 208 22 chr4 139683022 139683200 -44605462 + L1M4 LINE L1 3846 4056 -2090 323 301 133 48 chr4 139683301 139683465 -44605197 - L1M4 LINE L1 -1553 4593 4444 2261 95 0 7 chr4 139683465 139683760 -44604902 - AluSx SINE Alu -19 293 1 323 301 133 48 chr4 139683760 139683911 -44604751 - L1M4 LINE L1 -1702 4444 4251 319 100 0 125 chr4 139683937 139684018 -44604644 - L1M4 LINE L1 -1975 4171 4100 295 270 81 9 chr4 139684032 139684143 -44604519 + MLT1I LTR MaLR 19 137 -272 308 164 82 0 chr4 139684376 139684449 -44604213 + L1ME3A LINE L1 5867 5945 -225 312 270 29 15 chr4 139684569 139684706 -44603956 + L1ME3A LINE L1 6027 6165 -5 285 294 120 0 chr4 139684996 139685088 -44603574 + L2 LINE L2 3168 3270 -2 622 171 62 0 chr4 139685232 139685361 -44603301 - LTR16C LTR ERVL 0 491 355 1318 147 22 4 chr4 139685364 139685589 -44603073 + MER49 LTR ERV1 1 229 -694 366 286 137 31 chr4 139685602 139685829 -44602833 - L1M4 LINE L1 -1681 4465 4215 3344 164 81 9 chr4 139685830 139686487 -44602175 + MER49 LTR ERV1 219 922 -1 577 230 52 70 chr4 139686526 139686739 -44601923 - LTR16C LTR ERVL -219 272 64 27 73 0 0 chr4 139687472 139687527 -44601135 + AT_rich Low_complexity Low_complexity 1 55 0 997 168 6 18 chr4 139688039 139688206 -44600456 - FRAM SINE Alu -1 165 1 1772 104 25 0 chr4 139688759 139689037 -44599625 - L1MB4 LINE L1 -60 6120 5836 26 30 0 0 chr4 139689052 139689085 -44599577 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr4 139689260 139689281 -44599381 + AT_rich Low_complexity Low_complexity 1 21 0 1748 172 47 0 chr4 139689331 139689628 -44599034 - AluJo SINE Alu -1 311 1 186 43 0 0 chr4 139689815 139689838 -44598824 + (CAAAT)n Simple_repeat Simple_repeat 4 26 0 24 0 0 0 chr4 139690473 139690497 -44598165 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr4 139691520 139691549 -44597113 + AT_rich Low_complexity Low_complexity 1 29 0 2307 112 3 0 chr4 139691593 139691896 -44596766 - AluSx SINE Alu -8 304 1 354 216 126 0 chr4 139692483 139692594 -44596068 + MIR SINE MIR 120 244 -18 249 348 70 5 chr4 139692881 139693068 -44595594 + L2 LINE L2 1795 1993 -1321 637 326 184 15 chr4 139693153 139693778 -44594884 + L2 LINE L2 2338 3054 -218 533 208 10 0 chr4 139693850 139693951 -44594711 + Tigger3(Golem) DNA MER2_type 41 142 -2887 * 1274 154 75 0 chr4 139693948 139694188 -44594474 + Tigger3(Golem) DNA MER2_type 2772 3029 0 198 267 67 17 chr4 139694294 139694354 -44594308 + L2 LINE L2 3210 3272 0 224 255 0 0 chr4 139694745 139694796 -44593866 + MIR SINE MIR 65 115 -147 864 203 119 13 chr4 139694876 139695103 -44593559 + MIR SINE MIR 2 252 -10 221 317 84 12 chr4 139695315 139695459 -44593203 - MER5A DNA MER1_type -4 174 22 432 0 0 0 chr4 139696098 139696146 -44592516 + (TG)n Simple_repeat Simple_repeat 2 49 0 229 274 98 59 chr4 139697676 139697778 -44590884 + MIR SINE MIR 40 145 -117 1012 237 13 5 chr4 139699415 139699875 -44588787 + MLT1G LTR MaLR 10 506 -49 38 89 0 0 chr4 139701087 139701188 -44587474 + AT_rich Low_complexity Low_complexity 1 101 0 256 290 39 77 chr4 139701210 139701292 -44587370 + L1ME LINE L1 5528 5612 -509 2092 145 0 16 chr4 139701292 139701609 -44587053 - AluSx SINE Alu 0 312 1 256 290 39 77 chr4 139701609 139701733 -44586929 + L1ME LINE L1 5612 5726 -395 364 266 105 16 chr4 139701984 139702108 -44586554 + MIR SINE MIR 4 138 -124 688 285 75 31 chr4 139702232 139702460 -44586202 - MIR SINE MIR -21 241 4 417 274 124 44 chr4 139702780 139703006 -44585656 + L3 LINE CR1 1213 1456 -121 526 299 60 29 chr4 139703038 139703270 -44585392 + MIR SINE MIR 23 262 0 180 400 27 0 chr4 139703287 139703397 -44585265 + L3 LINE CR1 1464 1576 -1 1619 143 82 17 chr4 139704243 139704536 -44584126 - AluJb SINE Alu 0 312 1 204 349 28 82 chr4 139705106 139705361 -44583301 - L2 LINE L2 -191 3081 2841 1579 146 51 45 chr4 139705504 139705839 -44582823 - MLT1C LTR MaLR -130 337 1 1841 186 3 0 chr4 139705913 139706231 -44582431 + 7SLRNA srpRNA srpRNA 1 319 -1 2171 123 10 0 chr4 139708386 139708694 -44579968 + AluSx SINE Alu 1 311 -1 327 182 0 0 chr4 139708702 139708779 -44579883 + GA-rich Low_complexity Low_complexity 2 78 0 2165 91 0 7 chr4 139709572 139709895 -44578767 - AluY SINE Alu 0 321 1 2239 113 0 0 chr4 139709900 139710202 -44578460 - AluSx SINE Alu -10 302 1 2035 47 16 0 chr4 139710467 139710724 -44577938 + L1PA7 LINE L1 5892 6152 -2 1510 187 51 44 chr4 139711316 139711706 -44576956 + L1ME1 LINE L1 5749 6141 -25 26 0 0 0 chr4 139711715 139711741 -44576921 + AT_rich Low_complexity Low_complexity 1 26 0 339 310 35 35 chr4 139711908 139712082 -44576580 + L1M4 LINE L1 4995 5168 -978 502 28 42 0 chr4 139712095 139712166 -44576496 + (TAGA)n Simple_repeat Simple_repeat 3 76 0 361 314 76 96 chr4 139712213 139712621 -44576041 + L2 LINE L2 2873 3272 0 189 294 10 69 chr4 139713639 139713741 -44574921 + L2 LINE L2 3214 3309 -4 * 2105 269 122 43 chr4 139713723 139714299 -44574363 - L2 LINE L2 -1 3312 2783 2281 105 3 0 chr4 139714299 139714594 -44574068 + AluSx SINE Alu 1 296 -16 285 29 0 0 chr4 139714604 139714638 -44574024 + (TG)n Simple_repeat Simple_repeat 1 34 0 2105 269 122 43 chr4 139714638 139715252 -44573410 - L2 LINE L2 -538 2775 2013 404 322 123 7 chr4 139715581 139715762 -44572900 + MIR SINE MIR 3 201 -61 824 265 95 11 chr4 139716370 139716748 -44571914 - L1M4 LINE L1 -1226 4920 4511 2053 155 191 41 chr4 139716775 139717284 -44571378 - LTR18B LTR ERVL -27 587 3 1352 157 52 20 chr4 139717356 139717605 -44571057 - AluJb SINE Alu -10 302 46 528 275 85 23 chr4 139717612 139717917 -44570745 - L1M4 LINE L1 -1700 4446 4123 4046 91 15 4 chr4 139717917 139718465 -44570197 + HSMAR1 DNA Mariner 2 555 -732 3151 102 25 2 chr4 139718445 139718877 -44569785 + HSMAR1 DNA Mariner 843 1284 -3 * 245 253 80 0 chr4 139718878 139718953 -44569709 - L1M4 LINE L1 -2025 4121 4041 10786 208 59 14 chr4 139719068 139719101 -44569561 - L1PBb LINE L1 -1706 4497 4467 228 35 0 0 chr4 139719101 139719130 -44569532 + (TG)n Simple_repeat Simple_repeat 2 30 0 10786 208 59 14 chr4 139719130 139721358 -44567304 - L1PBb LINE L1 -1736 4467 2341 2241 135 0 0 chr4 139721358 139721669 -44566993 - AluSx SINE Alu -1 311 1 10786 208 59 14 chr4 139721669 139722628 -44566034 - L1PBb LINE L1 -3862 2341 1427 2279 45 11 0 chr4 139722628 139722893 -44565769 - AluY SINE Alu -13 298 31 10786 208 59 14 chr4 139722893 139723506 -44565156 - L1PBb LINE L1 -4776 1427 385 5677 129 40 2 chr4 139723529 139724602 -44564060 - L1PB2 LINE L1 0 6151 5041 1774 91 4 31 chr4 139724608 139724862 -44563800 - AluSc SINE Alu -62 247 1 11184 248 64 47 chr4 139724862 139728362 -44560300 - HERVI LTR ERV1 -30 6619 3140 465 214 71 29 chr4 139728780 139728920 -44559742 - HERVI LTR ERV1 -6602 1183 1038 * 2742 202 47 88 chr4 139728913 139729759 -44558903 - HERVI LTR ERV1 -5832 817 6 1459 208 148 51 chr4 139729811 139730297 -44558365 - LTR10B LTR ERV1 -3 544 12 367 216 14 0 chr4 139730318 139730392 -44558270 - L1PBb LINE L1 -6104 100 26 * 8656 172 22 20 chr4 139730389 139731816 -44556846 - L1PBa LINE L1 -5245 1618 185 2626 114 19 5 chr4 139731816 139732184 -44556478 - THE1C LTR MaLR 0 375 3 8656 172 22 20 chr4 139732184 139732370 -44556292 - L1PBa LINE L1 -6678 185 1 340 261 8 60 chr4 139732590 139732724 -44555938 - L1M2 LINE L1 -5782 1067 941 249 222 12 12 chr4 139732809 139732890 -44555772 - L1MDa LINE L1 -5173 1768 1688 230 287 0 37 chr4 139732910 139733018 -44555644 - L1MDa LINE L1 -4950 1473 1370 2333 65 0 0 chr4 139733236 139733535 -44555127 - AluSc SINE Alu 0 299 1 296 380 0 0 chr4 139734173 139734315 -44554347 - MER117 DNA MER1_type 0 197 56 2805 154 43 52 chr4 139734526 139735105 -44553557 + MER4B LTR ERV1 1 574 -36 510 304 70 51 chr4 139735291 139735705 -44552957 - MER115 DNA AcHobo -270 423 2 1905 124 60 0 chr4 139736317 139736600 -44552062 + AluSq SINE Alu 1 300 -13 506 179 214 8 chr4 139736614 139736731 -44551931 + FLAM_C SINE Alu 1 141 -2 192 125 0 0 chr4 139736846 139736878 -44551784 + (TC)n Simple_repeat Simple_repeat 1 32 0 2143 119 0 31 chr4 139737020 139737339 -44551323 + AluSc SINE Alu 1 309 0 666 292 76 55 chr4 139738577 139739124 -44549538 + L1MC4a LINE L1 5328 5721 -570 2478 67 7 3 chr4 139739204 139739503 -44549159 + AluY SINE Alu 1 300 -11 450 0 0 0 chr4 139739506 139739556 -44549106 + (CA)n Simple_repeat Simple_repeat 1 50 0 421 141 24 24 chr4 139741361 139741446 -44547216 - L1PA13 LINE L1 -396 5767 5683 * 3087 74 5 0 chr4 139741415 139741819 -44546843 + L1PA13 LINE L1 5758 6163 0 2511 87 0 0 chr4 139742298 139742609 -44546053 + AluY SINE Alu 1 311 0 2164 134 0 0 chr4 139742623 139742922 -44545740 + AluSx SINE Alu 1 299 -13 410 317 79 91 chr4 139742941 139743689 -44544973 - L2 LINE L2 -841 2473 1735 424 345 43 43 chr4 139743793 139744161 -44544501 - L2 LINE L2 -1809 1505 1138 451 269 64 0 chr4 139744609 139744750 -44543912 + MLT1H1 LTR MaLR 1 150 -405 1353 266 83 16 chr4 139744773 139745457 -44543205 + L2 LINE L2 2587 3313 0 2062 116 11 0 chr4 139746706 139746990 -44541672 + AluSq SINE Alu 1 287 -26 206 0 0 65 chr4 139746993 139747024 -44541638 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5024 114 28 1 chr4 139747770 139748487 -44540175 - L1PA14 LINE L1 0 6161 5426 331 143 0 0 chr4 139748487 139748543 -44540119 + L1P LINE L1 5358 5413 -748 21 0 0 0 chr4 139750072 139750093 -44538569 + AT_rich Low_complexity Low_complexity 1 21 0 1774 147 58 7 chr4 139751057 139751350 -44537312 - AluJb SINE Alu -4 308 1 639 153 38 143 chr4 139752466 139752675 -44535987 + MER53 DNA DNA 1 187 -2 2217 109 0 0 chr4 139752763 139753048 -44535614 + AluSq SINE Alu 12 296 -17 637 234 80 29 chr4 139753649 139753888 -44534774 + L1ME4a LINE L1 5777 6027 -94 330 44 22 0 chr4 139754125 139754170 -44534492 + MADE1 DNA Mariner 1 46 -34 253 308 138 0 chr4 139754201 139754331 -44534331 - MIR SINE MIR -38 224 77 1760 196 46 3 chr4 139754726 139755053 -44533609 - MER58B DNA MER1_type 0 341 1 549 177 109 104 chr4 139756488 139756708 -44531954 + MIR SINE MIR 16 236 -26 595 276 45 15 chr4 139757035 139757234 -44531428 - L3 LINE CR1 -4 1573 1369 247 211 84 63 chr4 139757306 139757401 -44531261 + Charlie4 DNA MER1_type 1860 1956 -5 450 274 147 87 chr4 139757413 139757832 -44530830 - L3 LINE CR1 -251 1326 871 858 281 61 4 chr4 139757832 139758078 -44530584 - MIR SINE MIR 0 262 3 450 274 147 87 chr4 139758078 139758154 -44530508 - L3 LINE CR1 -706 871 801 1306 232 56 28 chr4 139758303 139758661 -44530001 + MER87 LTR ERV1 174 541 0 186 259 153 12 chr4 139758829 139758914 -44529748 - MIR SINE MIR 0 262 166 277 357 133 32 chr4 139758921 139759208 -44529454 - L3 LINE CR1 -925 652 395 1967 83 4 0 chr4 139759208 139759460 -44529202 - AluY SINE Alu -15 296 44 277 357 133 32 chr4 139759460 139759570 -44529092 - L3 LINE CR1 -1182 395 297 2161 133 0 0 chr4 139759570 139759879 -44528783 - AluSx SINE Alu -3 309 1 277 357 133 32 chr4 139759879 139760015 -44528647 - L3 LINE CR1 -1280 297 64 245 337 12 0 chr4 139760458 139760541 -44528121 + MIR SINE MIR 2 85 -177 250 226 16 16 chr4 139760599 139760661 -44528001 + MIR SINE MIR 96 157 -105 251 281 16 0 chr4 139760781 139760845 -44527817 + MIR SINE MIR 198 262 0 28 48 0 0 chr4 139761581 139761623 -44527039 + AT_rich Low_complexity Low_complexity 1 42 0 356 335 45 38 chr4 139761995 139762285 -44526377 - L1MEc LINE L1 -6019 377 86 226 299 47 39 chr4 139762390 139762517 -44526145 - L1MC/D LINE L1 -1937 5871 5744 208 422 52 7 chr4 139763639 139763793 -44524869 - MIR3 SINE MIR -13 195 35 1032 169 13 43 chr4 139764316 139764547 -44524115 + AluJb SINE Alu 89 312 0 1454 155 43 36 chr4 139765444 139765721 -44522941 - AluJo SINE Alu -30 282 4 906 117 8 0 chr4 139766103 139766231 -44522431 + AluSg SINE Alu 1 129 -181 586 277 66 71 chr4 139766490 139766869 -44521793 + L1ME4a LINE L1 5492 5868 -253 924 206 73 108 chr4 139767996 139768094 -44520568 + MLT1A1 LTR MaLR 3 103 -262 3207 112 20 16 chr4 139768094 139768148 -44520514 + MER83 LTR ERV1 1 53 -395 201 39 0 0 chr4 139768148 139768174 -44520488 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 3207 112 20 16 chr4 139768174 139768565 -44520097 + MER83 LTR ERV1 53 448 0 924 206 73 108 chr4 139768565 139768835 -44519827 + MLT1A1 LTR MaLR 103 358 -7 1712 167 77 3 chr4 139769961 139770284 -44518378 - MER7A DNA MER2_type 0 346 2 23 0 0 0 chr4 139770326 139770349 -44518313 + AT_rich Low_complexity Low_complexity 1 23 0 1987 107 11 7 chr4 139770349 139770620 -44518042 + AluSx SINE Alu 26 297 -15 26 30 0 0 chr4 139771713 139771746 -44516916 + AT_rich Low_complexity Low_complexity 1 33 0 1592 174 3 14 chr4 139771928 139772210 -44516452 - AluJo SINE Alu -33 279 1 231 266 135 0 chr4 139772229 139772341 -44516321 - MIR SINE MIR -66 142 26 1691 176 3 23 chr4 139772484 139772790 -44515872 - AluJb SINE Alu -12 300 1 540 139 0 26 chr4 139773189 139773304 -44515358 + (TA)n Simple_repeat Simple_repeat 1 112 0 2130 228 52 67 chr4 139774272 139774458 -44514204 - L1MC4 LINE L1 -1 8041 7854 2261 117 30 10 chr4 139774458 139774851 -44513811 - L1MA4A LINE L1 0 6303 5903 2130 228 52 67 chr4 139774851 139775751 -44512911 - L1MC4 LINE L1 -188 7854 6918 2430 76 0 7 chr4 139776876 139777179 -44511483 - AluY SINE Alu -10 301 1 1156 159 62 10 chr4 139777543 139777751 -44510911 + MER20 DNA MER1_type 1 219 0 21 0 0 0 chr4 139777813 139777834 -44510828 + AT_rich Low_complexity Low_complexity 1 21 0 5825 141 37 39 chr4 139778796 139780186 -44508476 + L1MA9 LINE L1 4915 6304 -8 322 302 81 20 chr4 139780718 139780867 -44507795 + L2 LINE L2 2267 2424 -890 214 146 164 18 chr4 139780953 139781008 -44507654 + MIR SINE MIR 58 120 -142 244 244 52 70 chr4 139781034 139781149 -44507513 + L2 LINE L2 2949 3061 -252 21 36 0 0 chr4 139782509 139782537 -44506125 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 139783449 139783477 -44505185 + AT_rich Low_complexity Low_complexity 1 28 0 306 143 20 0 chr4 139783486 139783535 -44505127 - MER66B LTR ERV1 -142 344 295 244 180 40 0 chr4 139785076 139785126 -44503536 + (TGAA)n Simple_repeat Simple_repeat 4 55 0 180 0 0 0 chr4 139785365 139785385 -44503277 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2109 91 40 7 chr4 139785387 139785661 -44503001 - AluSp SINE Alu -30 283 1 242 184 82 31 chr4 139786074 139786172 -44502490 + L1ME3A LINE L1 5328 5430 -691 828 163 0 15 chr4 139786603 139786738 -44501924 + FLAM_C SINE Alu 1 133 0 229 245 0 0 chr4 139787624 139787673 -44500989 + MIR SINE MIR 104 152 -56 255 74 41 148 chr4 139788172 139788417 -44500245 + AluSg SINE Alu 1 301 0 1181 178 53 32 chr4 139789882 139790218 -44498444 - MER4C LTR ERV1 0 465 152 640 197 7 21 chr4 139790329 139790471 -44498191 - MER4C LTR ERV1 -325 140 1 1455 245 82 85 chr4 139790488 139791100 -44497562 + L1ME3A LINE L1 5476 6085 -85 344 297 167 41 chr4 139795249 139795920 -44492742 + L2 LINE L2 2546 3304 -9 * 599 323 5 25 chr4 139795894 139796095 -44492567 - MIR SINE MIR -49 213 17 527 124 0 106 chr4 139796172 139796285 -44492377 + MER53 DNA DNA 1 101 -88 297 292 108 17 chr4 139796981 139797101 -44491561 - MIR SINE MIR -70 192 62 282 336 33 8 chr4 139797193 139797315 -44491347 + MIR SINE MIR 20 144 -118 2035 170 0 0 chr4 139798291 139798602 -44490060 - AluJb SINE Alu -1 311 1 261 228 38 25 chr4 139800205 139800284 -44488378 + Charlie8 DNA MER1_type 105 184 -2233 2255 110 0 7 chr4 139800442 139800751 -44487911 - AluSq SINE Alu -6 307 1 207 314 49 0 chr4 139800919 139801021 -44487641 + MIR SINE MIR 118 224 -38 1793 159 21 0 chr4 139801103 139801392 -44487270 + AluJb SINE Alu 1 295 -17 446 256 56 44 chr4 139801583 139801763 -44486899 + L1MC5 LINE L1 7706 7887 -74 197 298 0 0 chr4 139801801 139801848 -44486814 + L2 LINE L2 3201 3247 -25 2015 154 0 7 chr4 139801873 139802178 -44486484 + AluSx SINE Alu 1 303 -9 230 250 71 12 chr4 139802518 139802602 -44486060 + MIR SINE MIR 54 142 -120 470 253 16 89 chr4 139803340 139803530 -44485132 - MER5B DNA MER1_type 0 178 3 2044 64 38 4 chr4 139803962 139804229 -44484433 - LTR10D LTR ERV1 0 513 238 3048 186 127 52 chr4 139804348 139804741 -44483921 + L1MB8 LINE L1 4586 4948 -1230 2278 119 0 0 chr4 139804741 139805043 -44483619 + AluSg SINE Alu 1 302 -8 3048 186 127 52 chr4 139805043 139805598 -44483064 + L1MB8 LINE L1 4948 5460 -718 1795 160 10 33 chr4 139805598 139805898 -44482764 - AluJb SINE Alu -19 293 1 3048 186 127 52 chr4 139805898 139806250 -44482412 + L1MB8 LINE L1 5460 5784 -394 2501 53 0 10 chr4 139806250 139806552 -44482110 - AluY SINE Alu -12 299 1 3048 186 127 52 chr4 139806552 139806724 -44481938 + L1MB8 LINE L1 5784 6178 0 730 199 7 7 chr4 139807532 139807673 -44480989 + FLAM_C SINE Alu 2 142 -1 233 286 0 0 chr4 139810404 139810467 -44478195 + MIR3 SINE MIR 123 185 -23 993 154 50 59 chr4 139811074 139811295 -44477367 + MER20 DNA MER1_type 1 219 0 378 0 0 0 chr4 139811589 139811631 -44477031 + (TG)n Simple_repeat Simple_repeat 1 42 0 272 153 71 10 chr4 139812099 139812197 -44476465 + (TA)n Simple_repeat Simple_repeat 2 105 0 1960 138 3 26 chr4 139812793 139813098 -44475564 + AluSx SINE Alu 1 298 -14 21 0 0 0 chr4 139813238 139813259 -44475403 + AT_rich Low_complexity Low_complexity 1 21 0 538 267 0 8 chr4 139814456 139814576 -44474086 + FLAM_A SINE Alu 8 126 -16 1870 158 0 38 chr4 139814606 139814923 -44473739 - AluJo SINE Alu -7 305 1 494 246 110 40 chr4 139814927 139815199 -44473463 + L1ME4a LINE L1 5830 6120 -1 292 296 70 9 chr4 139815531 139815646 -44473016 - MER5A DNA MER1_type -1 188 67 2297 177 102 14 chr4 139815782 139816284 -44472378 + MER74A LTR ERVL 6 551 -7 2296 109 7 0 chr4 139816285 139816589 -44472073 + AluSx SINE Alu 1 306 -6 676 162 30 17 chr4 139817728 139817968 -44470694 + CT-rich Low_complexity Low_complexity 1 243 0 1272 187 112 15 chr4 139817977 139818245 -44470417 - AluJo SINE Alu -18 294 1 1991 141 3 28 chr4 139820961 139821281 -44467381 + AluJb SINE Alu 1 312 0 845 145 0 22 chr4 139821343 139821481 -44467181 - FLAM_C SINE Alu -2 141 7 575 276 24 12 chr4 139821644 139821814 -44466848 + MIR SINE MIR 47 218 -44 548 293 59 72 chr4 139822293 139822512 -44466150 + L1ME4a LINE L1 5599 5819 -302 2115 148 0 0 chr4 139822512 139822822 -44465840 + AluSx SINE Alu 1 310 -2 548 293 59 72 chr4 139822822 139823114 -44465548 + L1ME4a LINE L1 5819 6103 -18 236 228 142 105 chr4 139823412 139823574 -44465088 + MIR3 SINE MIR 30 197 -11 2352 88 7 0 chr4 139824399 139824705 -44463957 + AluSx SINE Alu 1 308 -4 1763 175 0 16 chr4 139825318 139825621 -44463041 + AluJb SINE Alu 1 298 -14 2003 97 41 0 chr4 139826692 139826961 -44461701 + AluSg SINE Alu 1 280 -30 275 321 125 36 chr4 139827166 139827278 -44461384 + L2 LINE L2 3107 3228 -44 4084 179 50 11 chr4 139827311 139828132 -44460530 + L1MC3 LINE L1 6896 7748 -37 777 197 23 0 chr4 139828239 139828371 -44460291 + AluJo SINE Alu 2 136 -176 2442 90 0 0 chr4 139828393 139828693 -44459969 + AluSx SINE Alu 3 302 -10 2110 125 3 3 chr4 139828762 139829058 -44459604 + AluSx SINE Alu 2 297 -15 767 75 47 0 chr4 139829060 139829166 -44459496 - HY1 scRNA scRNA -1 111 1 438 210 98 71 chr4 139829294 139829623 -44459039 + MLT1J2 LTR MaLR 54 449 -1 210 288 162 9 chr4 139830124 139830235 -44458427 - L2 LINE L2 -4 3309 3182 279 369 10 0 chr4 139831668 139831771 -44456891 + MIR SINE MIR 40 143 -65 1979 152 0 9 chr4 139832338 139832653 -44456009 + AluSx SINE Alu 1 312 0 189 147 0 0 chr4 139832658 139832692 -44455970 + (A)n Simple_repeat Simple_repeat 1 34 0 282 182 0 18 chr4 139832999 139833054 -44455608 - MLT1C LTR MaLR -413 54 1 308 272 53 75 chr4 139833574 139833861 -44454801 + L1MC4a LINE L1 5678 5964 -157 242 189 10 58 chr4 139833832 139833932 -44454730 + L1MC4 LINE L1 1994 6983 -1339 * 666 303 107 0 chr4 139834126 139834360 -44454302 + MIR SINE MIR 2 260 -2 476 141 0 10 chr4 139834853 139834952 -44453710 + (TTCC)n Simple_repeat Simple_repeat 1 98 0 2120 120 7 7 chr4 139834952 139835251 -44453411 - AluSg SINE Alu -11 299 1 2345 98 0 0 chr4 139835308 139835614 -44453048 - AluSx SINE Alu -6 306 1 2297 99 20 0 chr4 139835995 139836299 -44452363 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr4 139836455 139836476 -44452186 + AT_rich Low_complexity Low_complexity 1 21 0 314 182 13 78 chr4 139836630 139836707 -44451955 - MLT2B3 LTR ERVL 0 554 483 * 1134 183 22 112 chr4 139836704 139837016 -44451646 - MLT2B3 LTR ERVL -270 284 1 542 147 0 10 chr4 139837317 139837419 -44451243 + (TCCC)n Simple_repeat Simple_repeat 1 101 0 1792 167 4 11 chr4 139837419 139837700 -44450962 - AluJo SINE Alu -33 279 1 308 296 23 11 chr4 139838160 139838248 -44450414 - MIR SINE MIR -60 148 60 242 214 24 60 chr4 139838380 139838464 -44450198 - MLT1K LTR MaLR -380 208 128 1859 154 3 45 chr4 139838806 139839117 -44449545 + AluJo SINE Alu 1 298 -14 1009 198 60 103 chr4 139839627 139839996 -44448666 + MER51C LTR ERV1 288 640 0 968 199 6 0 chr4 139840186 139840362 -44448300 + AluJo SINE Alu 84 260 -52 2153 129 0 0 chr4 139840531 139840825 -44447837 - AluSx SINE Alu -18 294 1 2364 107 0 0 chr4 139841195 139841493 -44447169 + AluSx SINE Alu 1 298 -14 257 0 30 0 chr4 139842367 139842400 -44446262 + (TG)n Simple_repeat Simple_repeat 2 35 0 269 171 26 13 chr4 139842458 139842534 -44446128 - L1ME4a LINE L1 0 6121 6045 1134 202 14 10 chr4 139842611 139842819 -44445843 + AluJo SINE Alu 87 295 -17 484 207 0 0 chr4 139843020 139843102 -44445560 - AluJ/FLAM SINE Alu -229 83 2 491 239 107 19 chr4 139843102 139843261 -44445401 - L1ME LINE L1 -451 5670 5498 250 185 139 19 chr4 139843386 139843494 -44445168 - L1ME4a LINE L1 0 6121 6001 2318 86 0 3 chr4 139844088 139844378 -44444284 - AluSp SINE Alu -24 289 1 820 193 0 15 chr4 139844755 139844890 -44443772 + FLAM_A SINE Alu 1 133 0 256 200 0 50 chr4 139845074 139845102 -44443560 + (TATG)n Simple_repeat Simple_repeat 2 30 -28 969 204 55 154 chr4 139845102 139845484 -44443178 + MER2 DNA MER2_type 1 344 0 256 200 0 50 chr4 139845484 139845515 -44443147 + (TATG)n Simple_repeat Simple_repeat 30 58 0 693 270 87 42 chr4 139845535 139845776 -44442886 - MIR SINE MIR -4 258 7 1593 225 79 43 chr4 139846041 139846597 -44442065 + L1MC4a LINE L1 5254 5829 -1979 2683 173 9 9 chr4 139846639 139847096 -44441566 + LTR32 LTR ERVL 15 471 0 1892 136 0 67 chr4 139847346 139847662 -44441000 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr4 139847953 139847974 -44440688 + AT_rich Low_complexity Low_complexity 1 21 0 234 150 0 0 chr4 139849109 139849149 -44439513 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 25 65 0 0 chr4 139849731 139849777 -44438885 + AT_rich Low_complexity Low_complexity 1 46 0 1131 115 11 44 chr4 139849844 139850026 -44438636 - AluSg/x SINE Alu 0 312 137 2145 114 0 3 chr4 139850026 139850324 -44438338 - AluSx SINE Alu -15 297 1 1884 140 41 3 chr4 139850798 139851090 -44437572 - AluJo SINE Alu -9 303 1 1175 169 45 58 chr4 139851094 139851412 -44437250 - L1MA9 LINE L1 -10 6324 6027 441 232 242 26 chr4 139851693 139851883 -44436779 - MLT1D LTR MaLR 0 505 275 1035 148 0 34 chr4 139851901 139852077 -44436585 - FRAM SINE Alu -7 169 1 1052 205 14 69 chr4 139852077 139852365 -44436297 - MLT1D LTR MaLR -233 272 1 213 271 0 43 chr4 139852416 139852486 -44436176 - MIR SINE MIR 0 262 196 2251 128 0 0 chr4 139852537 139852849 -44435813 - AluSx SINE Alu 0 312 1 1757 177 3 10 chr4 139852853 139853147 -44435515 - AluJo SINE Alu -20 292 1 2075 118 0 3 chr4 139853740 139854028 -44434634 - AluSg SINE Alu -10 300 14 2232 99 3 3 chr4 139854089 139854382 -44434280 - AluSx SINE Alu -15 297 5 596 231 209 0 chr4 139854408 139854590 -44434072 - MIR SINE MIR -1 261 42 338 293 52 9 chr4 139854749 139854865 -44433797 + L2 LINE L2 3176 3296 -17 481 323 46 95 chr4 139854936 139855290 -44433372 - L2 LINE L2 0 3272 2964 739 163 23 39 chr4 139855290 139855419 -44433243 + FLAM_C SINE Alu 1 127 -6 481 323 46 95 chr4 139855419 139855791 -44432871 - L2 LINE L2 -308 2964 2575 283 329 29 36 chr4 139856097 139856234 -44432428 - MER5A DNA MER1_type -20 169 34 364 342 0 8 chr4 139856100 139856220 -44432442 + MER5B DNA MER1_type 24 142 -36 502 333 30 30 chr4 139857485 139857716 -44430946 - MIR SINE MIR -4 258 28 2447 146 52 69 chr4 139857727 139857754 -44430908 - L1MB3 LINE L1 -1 6182 6156 1806 151 192 0 chr4 139857754 139858092 -44430570 + MER57A LTR ERV1 1 403 0 2447 146 52 69 chr4 139858092 139858114 -44430548 - L1MB3 LINE L1 -27 6156 6135 2327 80 0 19 chr4 139858114 139858425 -44430237 - AluY SINE Alu -6 305 1 2447 146 52 69 chr4 139858425 139858870 -44429792 - L1MB3 LINE L1 -48 6135 5694 1914 150 0 3 chr4 139858870 139859163 -44429499 + AluSx SINE Alu 4 295 -17 2447 146 52 69 chr4 139859163 139859201 -44429461 - L1MB3 LINE L1 -489 5694 5657 406 192 0 0 chr4 139859589 139859662 -44429000 - AluJ/FRAM SINE Alu -12 300 228 1045 203 16 5 chr4 139859977 139860164 -44428498 - MER5A DNA MER1_type 0 189 1 232 132 26 0 chr4 139860167 139860205 -44428457 - Alu SINE Alu -210 92 54 310 309 99 26 chr4 139860425 139860616 -44428046 - L2 LINE L2 -3 3310 3106 21 0 0 0 chr4 139860746 139860767 -44427895 + AT_rich Low_complexity Low_complexity 1 21 0 1987 156 3 0 chr4 139860877 139861179 -44427483 - AluSx SINE Alu -4 308 6 420 222 56 78 chr4 139861948 139862128 -44426534 + L1MC4a LINE L1 5573 5748 -2060 2036 148 0 0 chr4 139862130 139862421 -44426241 + AluSx SINE Alu 1 291 -21 293 280 16 43 chr4 139862446 139862632 -44426030 + L1MC4a LINE L1 5731 5911 -1897 1042 144 0 0 chr4 139862773 139862926 -44425736 - AluJb SINE Alu -28 284 132 1556 155 85 115 chr4 139862953 139863354 -44425308 - MLT1B LTR MaLR 0 390 2 213 180 0 0 chr4 139864448 139864498 -44424164 + CT-rich Low_complexity Low_complexity 2 51 0 247 322 0 11 chr4 139864500 139864587 -44424075 + L2 LINE L2 3179 3264 -8 186 43 0 0 chr4 139864870 139864893 -44423769 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 293 276 152 9 chr4 139864899 139865004 -44423658 - L2 LINE L2 -30 3242 3123 358 197 0 0 chr4 139865375 139865436 -44423226 + AluJ/FRAM SINE Alu 229 289 -13 25 31 0 0 chr4 139866521 139866553 -44422109 + AT_rich Low_complexity Low_complexity 1 32 0 24 53 0 0 chr4 139867223 139867261 -44421401 + AT_rich Low_complexity Low_complexity 1 38 0 542 160 110 10 chr4 139867261 139867361 -44421301 - HY1 scRNA scRNA -2 110 1 1791 144 38 24 chr4 139867409 139867701 -44420961 + AluJb SINE Alu 2 297 -15 390 214 50 49 chr4 139868016 139868736 -44419926 + (CATATA)n Simple_repeat Simple_repeat 1 721 0 269 214 34 96 chr4 139868845 139869023 -44419639 + (TATATG)n Simple_repeat Simple_repeat 2 168 0 228 131 12 60 chr4 139869026 139869110 -44419552 + (TA)n Simple_repeat Simple_repeat 2 81 0 209 336 129 0 chr4 139869513 139869629 -44419033 + L2 LINE L2 3141 3271 -1 315 71 0 0 chr4 139869639 139869681 -44418981 + (TG)n Simple_repeat Simple_repeat 2 43 0 246 206 147 0 chr4 139870495 139870563 -44418099 + MIR SINE MIR 95 172 -90 781 301 130 22 chr4 139870897 139871398 -44417264 - L1ME3 LINE L1 -268 5894 5340 270 0 0 0 chr4 139873355 139873385 -44415277 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 369 0 0 0 chr4 139873384 139873425 -44415237 + (CA)n Simple_repeat Simple_repeat 1 41 0 654 195 177 8 chr4 139873496 139873781 -44414881 - MER5C DNA MER1_type -1 323 31 2147 132 20 54 chr4 139873787 139874136 -44414526 - MER1B DNA MER1_type 0 337 1 878 231 53 0 chr4 139874939 139875108 -44413554 - MER45A DNA AcHobo 0 178 1 335 218 154 67 chr4 139875787 139876118 -44412544 + L1ME4a LINE L1 5762 6121 0 2180 91 0 7 chr4 139876597 139876884 -44411778 + AluSg SINE Alu 2 286 -24 357 24 0 0 chr4 139876884 139876926 -44411736 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 268 186 0 0 chr4 139876926 139876969 -44411693 - Alu SINE Alu -25 277 235 2178 41 8 11 chr4 139876969 139877235 -44411427 - PABL_A LTR ERV1 0 660 396 827 145 0 15 chr4 139877235 139877366 -44411296 - AluJo SINE Alu -173 139 11 21 36 0 0 chr4 139877571 139877599 -44411063 + AT_rich Low_complexity Low_complexity 1 28 0 319 159 111 0 chr4 139877599 139877662 -44411000 + AluJ/FLAM SINE Alu 1 70 -232 924 117 0 0 chr4 139877764 139877909 -44410753 + (TC)n Simple_repeat Simple_repeat 1 145 0 859 182 24 18 chr4 139877924 139878094 -44410568 - MLT2D LTR ERVL -243 171 1 1871 161 27 76 chr4 139878810 139879220 -44409442 - MLT1B LTR MaLR 0 390 1 511 283 79 0 chr4 139879220 139879372 -44409290 + MIR SINE MIR 85 248 -14 21 71 0 0 chr4 139879406 139879448 -44409214 + AT_rich Low_complexity Low_complexity 1 42 0 1638 134 108 10 chr4 139879458 139879765 -44408897 + L1MA8 LINE L1 5803 6139 -152 822 144 8 0 chr4 139879775 139879893 -44408769 - AluJb SINE Alu -192 120 2 937 99 50 19 chr4 139879895 139880056 -44408606 + L1MA8 LINE L1 6126 6291 0 484 288 58 31 chr4 139880111 139880302 -44408360 + MIR SINE MIR 13 208 -54 643 255 159 63 chr4 139880373 139880788 -44407874 - MLT1J LTR MaLR -56 455 1 21 0 0 0 chr4 139881035 139881056 -44407606 + AT_rich Low_complexity Low_complexity 1 21 0 2469 93 6 0 chr4 139881414 139881725 -44406937 - AluSp SINE Alu 0 313 1 2444 93 0 0 chr4 139882134 139882436 -44406226 - AluSc SINE Alu -7 302 1 28 0 0 0 chr4 139882606 139882634 -44406028 + AT_rich Low_complexity Low_complexity 1 28 0 1336 207 45 14 chr4 139883062 139883352 -44405310 + AluJb SINE Alu 1 299 -13 1725 156 6 52 chr4 139884591 139884918 -44403744 - AluJb SINE Alu 0 312 1 189 0 0 0 chr4 139885248 139885269 -44403393 + (T)n Simple_repeat Simple_repeat 1 21 0 198 0 0 0 chr4 139885839 139885861 -44402801 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 268 261 139 26 chr4 139886087 139886202 -44402460 - MIR SINE MIR -65 143 16 207 0 0 0 chr4 139887066 139887089 -44401573 + (T)n Simple_repeat Simple_repeat 1 23 0 43391 52 7 2 chr4 139887120 139893244 -44395418 - L1PA5 LINE L1 0 6154 4 1140 78 0 0 chr4 139893247 139893388 -44395274 - AluY SINE Alu -16 295 155 306 285 140 53 chr4 139894071 139894299 -44394363 - MIR SINE MIR -12 250 3 455 245 110 63 chr4 139894802 139894879 -44393783 - MLT1K LTR MaLR -158 430 358 1890 152 33 107 chr4 139894879 139895300 -44393362 - MLT1B LTR MaLR 0 390 1 455 245 110 63 chr4 139895300 139895459 -44393203 - MLT1K LTR MaLR -230 358 183 284 0 28 0 chr4 139895485 139895521 -44393141 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1241 264 91 12 chr4 139895845 139896262 -44392400 - MLT1J2 LTR MaLR 0 450 1 439 304 99 61 chr4 139896350 139896643 -44392019 - L2 LINE L2 -107 3165 2862 744 12 0 0 chr4 139897139 139897224 -44391438 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 2060 185 45 45 chr4 139897590 139898082 -44390580 - L1MD3 LINE L1 0 7995 7504 2802 163 30 20 chr4 139898487 139898995 -44389667 + MLT2B1 LTR ERVL 1 513 -7 3092 109 12 5 chr4 139899014 139899445 -44389217 + MER57B LTR ERV1 1 434 0 1230 250 174 20 chr4 139900022 139900336 -44388326 - MLT1F1 LTR MaLR -7 560 296 216 0 0 0 chr4 139900336 139900360 -44388302 + (GA)n Simple_repeat Simple_repeat 1 24 0 1230 250 174 20 chr4 139900360 139900543 -44388119 - MLT1F1 LTR MaLR -271 296 2 333 271 159 0 chr4 139900866 139900973 -44387689 - L2 LINE L2 0 3313 3190 593 326 44 22 chr4 139901123 139901439 -44387223 + L2 LINE L2 2991 3313 0 212 136 0 106 chr4 139902425 139902491 -44386171 + (TTTTC)n Simple_repeat Simple_repeat 4 62 0 295 309 40 20 chr4 139902762 139902914 -44385748 - L1ME4a LINE L1 -1 6120 5966 451 175 38 0 chr4 139903147 139903227 -44385435 - MER58B DNA MER1_type -1 340 258 2104 164 139 8 chr4 139903229 139903596 -44385066 - MER47B DNA MER2_type -3 415 1 431 207 0 0 chr4 139903995 139904077 -44384585 - AluY SINE Alu -11 300 219 987 201 6 17 chr4 139904584 139904758 -44383904 + FAM SINE Alu 2 173 -2 43518 52 3 7 chr4 139904915 139911085 -44377577 - L1PA5 LINE L1 0 6154 11 1684 187 6 29 chr4 139911636 139911952 -44376710 + AluJb SINE Alu 1 309 -3 267 88 0 0 chr4 139912351 139912385 -44376277 - Alu SINE Alu -12 290 257 212 266 114 0 chr4 139912684 139912763 -44375899 + MIR SINE MIR 21 108 -154 211 330 44 11 chr4 139912768 139912859 -44375803 - MIR SINE MIR -1 261 168 292 297 7 19 chr4 139912903 139913069 -44375593 + MIR SINE MIR 6 247 -15 892 178 0 37 chr4 139913895 139914058 -44374604 - FRAM SINE Alu -9 157 1 2177 105 0 3 chr4 139914711 139915007 -44373655 + AluSg SINE Alu 1 295 -15 31 26 0 0 chr4 139915116 139915154 -44373508 + AT_rich Low_complexity Low_complexity 1 38 0 1987 157 7 94 chr4 139916528 139916880 -44371782 + MLT1B LTR MaLR 1 311 -79 1992 118 6 59 chr4 139916880 139917203 -44371459 - AluSg SINE Alu -4 306 1 1987 157 7 94 chr4 139917203 139917277 -44371385 + MLT1B LTR MaLR 311 390 0 697 235 113 123 chr4 139917363 139917860 -44370802 + MLT1H1 LTR MaLR 64 555 0 381 203 361 0 chr4 139918012 139918145 -44370517 + MLT1J LTR MaLR 320 500 -11 2402 88 7 0 chr4 139918352 139918649 -44370013 + AluSx SINE Alu 1 299 -13 588 177 18 9 chr4 139918667 139918780 -44369882 + MER67A LTR ERV1 430 543 0 469 284 42 68 chr4 139919759 139919905 -44368757 - MIR SINE MIR -29 233 92 2091 136 3 16 chr4 139919905 139920215 -44368447 - AluSx SINE Alu -6 306 1 469 284 42 68 chr4 139920215 139920258 -44368404 - MIR SINE MIR -170 92 49 * 594 331 72 7 chr4 139920254 139920559 -44368103 + L2 LINE L2 2805 3129 -184 1803 171 26 3 chr4 139920591 139920896 -44367766 - AluJo SINE Alu 0 312 1 2114 260 18 28 chr4 139920900 139921499 -44367163 + L2 LINE L2 2256 2848 -466 250 254 14 14 chr4 139921544 139921615 -44367047 + L2 LINE L2 3149 3219 -94 191 255 0 21 chr4 139921669 139921716 -44366946 - MIR SINE MIR -208 54 9 28 0 0 0 chr4 139921793 139921821 -44366841 + AT_rich Low_complexity Low_complexity 1 28 0 * 216 0 0 0 chr4 139921804 139921828 -44366834 + (T)n Simple_repeat Simple_repeat 1 24 0 196 287 0 85 chr4 139922389 139922483 -44366179 + MIR SINE MIR 60 145 -63 2140 160 14 30 chr4 139923332 139923700 -44364962 - THE1B LTR MaLR -2 362 1 833 144 0 0 chr4 139923722 139923840 -44364822 + FLAM_C SINE Alu 1 118 -25 247 0 79 0 chr4 139923841 139923879 -44364783 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 1977 151 6 13 chr4 139923903 139924215 -44364447 + AluSx SINE Alu 1 310 -2 483 239 18 9 chr4 139924222 139924331 -44364331 + MIR SINE MIR 63 172 -90 28 0 0 0 chr4 139925054 139925082 -44363580 + AT_rich Low_complexity Low_complexity 1 28 0 962 271 156 15 chr4 139925094 139925677 -44362985 + L1MEc LINE L1 1086 1750 -4646 22 0 0 0 chr4 139925899 139925921 -44362741 + AT_rich Low_complexity Low_complexity 1 22 0 816 164 0 37 chr4 139925921 139926055 -44362607 + FLAM_C SINE Alu 1 129 -4 452 277 97 65 chr4 139926091 139926369 -44362293 + L1MEc LINE L1 2031 2317 -4079 801 181 0 29 chr4 139926380 139926518 -44362144 + AluJo SINE Alu 3 136 -176 494 239 107 17 chr4 139926527 139926761 -44361901 + L1MEc LINE L1 2269 2523 -3692 * 1519 291 40 26 chr4 139926731 139926945 -44361717 + L1MEc LINE L1 3832 4041 -2174 249 33 0 0 chr4 139926945 139926975 -44361687 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 1519 291 40 26 chr4 139926975 139927602 -44361060 + L1MEc LINE L1 4041 4685 -1530 378 217 0 60 chr4 139927663 139927746 -44360916 + Tigger5 DNA MER2_type 1 78 -2245 407 262 28 19 chr4 139927747 139927854 -44360808 - Tigger5 DNA MER2_type -4 2319 2212 263 189 208 0 chr4 139927825 139927878 -44360784 + Tigger5 DNA MER2_type 2260 2323 0 * 2131 265 60 43 chr4 139927890 139927977 -44360685 + L1MEc LINE L1 4741 4825 -1414 332 136 30 0 chr4 139927977 139928043 -44360619 + L1PA16 LINE L1 6095 6162 -4 2131 265 60 43 chr4 139928043 139929229 -44359433 + L1MEc LINE L1 4825 6031 -208 225 297 33 11 chr4 139929851 139929942 -44358720 + L2 LINE L2 2966 3058 -214 526 213 51 116 chr4 139930039 139930097 -44358565 + LTR33 LTR ERVL 67 127 -394 742 220 0 0 chr4 139930097 139930229 -44358433 - FLAM_A SINE Alu 0 133 2 526 213 51 116 chr4 139930229 139930386 -44358276 + LTR33 LTR ERVL 127 268 -253 2337 96 6 10 chr4 139931169 139931481 -44357181 + AluSx SINE Alu 1 311 -1 287 113 19 0 chr4 139933205 139933258 -44355404 + GA-rich Low_complexity Low_complexity 1 54 0 252 0 0 0 chr4 139934312 139934340 -44354322 + (A)n Simple_repeat Simple_repeat 1 28 0 2637 142 118 28 chr4 139934890 139935372 -44353290 + MER39 LTR ERV1 1 526 -181 343 208 35 8 chr4 139935372 139935499 -44353163 + AluJ/FLAM SINE Alu 1 60 -242 1177 97 28 11 chr4 139935515 139935691 -44352971 + MER39 LTR ERV1 529 707 0 470 295 6 32 chr4 139935697 139935853 -44352809 - AluSc SINE Alu -11 298 147 2088 124 6 13 chr4 139936397 139936711 -44351951 + AluSx SINE Alu 1 312 0 398 294 136 22 chr4 139937057 139937285 -44351377 + MIR SINE MIR 9 262 0 768 204 0 0 chr4 139937366 139937498 -44351164 + FLAM_A SINE Alu 1 132 -1 267 31 0 0 chr4 139937618 139937650 -44351012 + (CA)n Simple_repeat Simple_repeat 2 33 0 327 252 119 42 chr4 139937876 139938019 -44350643 + MER91A DNA MER1_type 29 182 -14 285 156 39 13 chr4 139939855 139939932 -44348730 + CT-rich Low_complexity Low_complexity 2 80 0 1681 171 27 7 chr4 139940093 139940385 -44348277 - AluJb SINE Alu -14 298 1 1543 181 20 33 chr4 139940465 139940769 -44347893 + AluJo SINE Alu 1 300 -12 299 261 116 7 chr4 139940801 139940939 -44347723 - MIR SINE MIR -54 208 56 1776 172 10 7 chr4 139941385 139941688 -44346974 + AluJo SINE Alu 1 304 -8 195 186 0 0 chr4 139942117 139942160 -44346502 + GA-rich Low_complexity Low_complexity 6 48 0 2172 137 3 0 chr4 139942216 139942522 -44346140 + AluSx SINE Alu 3 309 -3 1614 108 15 54 chr4 139942891 139943150 -44345512 - MER1B DNA MER1_type 0 339 131 283 77 19 19 chr4 139943369 139943421 -44345241 + (TC)n Simple_repeat Simple_repeat 2 53 0 216 67 0 0 chr4 139943421 139943451 -44345211 + (CA)n Simple_repeat Simple_repeat 1 30 0 1774 140 108 108 chr4 139944130 139944595 -44344067 + MER4C LTR ERV1 1 465 0 1692 106 113 0 chr4 139944959 139945239 -44343423 - AluSp SINE Alu 0 309 1 386 275 114 24 chr4 139945386 139945553 -44343109 + MIR SINE MIR 49 230 -32 748 181 16 24 chr4 139945677 139945804 -44342858 + FLAM_A SINE Alu 1 126 -7 3701 153 48 6 chr4 139946091 139946751 -44341911 + LTR34 LTR ERV1 12 699 0 5831 123 14 50 chr4 139946888 139947390 -44341272 + MER4D LTR ERV1 1 455 -448 1829 166 3 3 chr4 139947390 139947692 -44340970 + AluJb SINE Alu 1 302 -10 5831 123 14 50 chr4 139947692 139948126 -44340536 + MER4D LTR ERV1 455 903 0 2455 95 0 0 chr4 139948208 139948512 -44340150 + AluSg SINE Alu 2 305 -5 246 136 0 0 chr4 139948834 139948878 -44339784 + (GGA)n Simple_repeat Simple_repeat 2 45 0 387 153 31 10 chr4 139948927 139949025 -44339637 + GA-rich Low_complexity Low_complexity 4 103 0 293 281 131 13 chr4 139949307 139949460 -44339202 - MIR SINE MIR -52 210 40 1373 98 10 16 chr4 139950232 139950426 -44338236 + MER4D LTR ERV1 1 193 -710 606 214 32 16 chr4 139950432 139950558 -44338104 + MER4E LTR ERV1 307 434 -345 2087 134 10 0 chr4 139950565 139950863 -44337799 + AluSx SINE Alu 9 309 -3 245 33 0 0 chr4 139951066 139951096 -44337566 + HSMAR1 DNA Mariner 2 31 -1256 4839 156 41 30 chr4 139951374 139952045 -44336617 - MER4D LTR ERV1 0 903 217 1604 181 22 11 chr4 139952045 139952349 -44336313 + AluJo SINE Alu 4 310 0 4839 156 41 30 chr4 139952349 139952555 -44336107 - MER4D LTR ERV1 -686 217 15 1591 196 3 13 chr4 139953402 139953703 -44334959 + AluJo SINE Alu 1 298 -14 183 114 0 0 chr4 139954122 139954157 -44334505 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 811 153 15 38 chr4 139955999 139956130 -44332532 + AluSx SINE Alu 6 133 -180 1175 119 24 0 chr4 139956145 139956360 -44332302 + AluSx SINE Alu 112 330 0 344 309 0 0 chr4 139956366 139956447 -44332215 + MIR SINE MIR 49 129 -133 192 323 52 0 chr4 139956594 139956690 -44331972 - MIR3 SINE MIR -17 191 91 615 317 31 9 chr4 139957080 139957307 -44331355 + MIR SINE MIR 18 249 -13 218 294 128 9 chr4 139957483 139957592 -44331070 - L2 LINE L2 -571 2743 2622 369 206 153 8 chr4 139957610 139957741 -44330921 - MIR SINE MIR -13 249 100 566 301 117 0 chr4 139958483 139958696 -44329966 - MIR SINE MIR 0 262 25 271 313 0 12 chr4 139959675 139959755 -44328907 - L2 LINE L2 0 3272 3194 2101 126 7 0 chr4 139960537 139960831 -44327831 - AluSx SINE Alu -16 296 1 23 33 0 0 chr4 139960930 139960960 -44327702 + AT_rich Low_complexity Low_complexity 1 30 0 1463 177 62 0 chr4 139960968 139961228 -44327434 - AluJo SINE Alu -24 288 13 574 215 104 57 chr4 139961760 139962088 -44326574 + L1MC/D LINE L1 5125 5470 -743 277 300 92 8 chr4 139962715 139962845 -44325817 - L1P5 LINE L1 -688 5468 5328 850 227 79 110 chr4 139963146 139963463 -44325199 - MLT1D LTR MaLR -7 498 154 721 260 70 12 chr4 139963699 139963941 -44324721 - MIR SINE MIR -5 257 2 1075 128 6 0 chr4 139965861 139965877 -44322785 + L1PA8 LINE L1 6005 6019 -153 928 125 0 29 chr4 139965877 139966013 -44322649 + FLAM_C SINE Alu 2 133 0 1075 128 6 0 chr4 139966013 139966160 -44322502 + L1PA8 LINE L1 6019 6169 -3 204 259 35 0 chr4 139966165 139966223 -44322439 + GA-rich Low_complexity Low_complexity 2 61 0 1136 133 26 35 chr4 139966252 139966478 -44322184 - L1 LINE L1 -1554 4592 4369 498 209 0 0 chr4 139966480 139966571 -44322091 - AluSg/x SINE Alu -5 304 214 * 677 138 0 65 chr4 139966563 139966686 -44321976 - AluJo/FLAM SINE Alu -194 118 4 229 163 23 0 chr4 139966864 139966907 -44321755 + MIR SINE MIR 157 200 -62 742 171 0 75 chr4 139967006 139967152 -44321510 - FLAM_C SINE Alu -7 136 2 568 291 75 47 chr4 139967972 139968292 -44320370 + MLT1I LTR MaLR 73 401 -8 226 275 77 24 chr4 139968316 139968523 -44320139 - L1M4 LINE L1 -3707 2439 2222 514 271 166 65 chr4 139968902 139969360 -44319302 + MLT1H1 LTR MaLR 51 554 -1 6122 217 33 22 chr4 139969471 139970897 -44317765 - L1MD1 LINE L1 -3 6222 4813 1906 139 10 39 chr4 139970897 139971207 -44317455 - AluSx SINE Alu -9 303 3 6122 217 33 22 chr4 139971207 139972197 -44316465 - L1MD1 LINE L1 -1412 4813 3774 1883 199 46 6 chr4 139972197 139972548 -44316114 - MLT1A1 LTR MaLR 0 365 1 6122 217 33 22 chr4 139972548 139972776 -44315886 - L1MD1 LINE L1 -2451 3774 3550 1274 206 8 8 chr4 139972772 139973015 -44315647 - AluJb SINE Alu -6 306 64 * 310 176 0 29 chr4 139973016 139973084 -44315578 - L1 LINE L1 -2934 3195 3130 387 212 99 57 chr4 139973120 139973309 -44315353 - L1 LINE L1 -2953 3193 2994 368 283 86 84 chr4 139973312 139974041 -44314621 - L1MD1 LINE L1 -4867 1252 522 1084 135 6 17 chr4 139974405 139974583 -44314079 - MLT1C LTR MaLR -46 421 246 536 324 54 73 chr4 139974852 139975441 -44313221 - L2 LINE L2 -2 3311 2736 408 55 0 0 chr4 139975451 139975506 -44313156 + (TG)n Simple_repeat Simple_repeat 2 56 0 664 194 24 8 chr4 139975636 139975760 -44312902 + FLAM_C SINE Alu 1 126 -17 2552 179 23 28 chr4 139976600 139977163 -44311499 - L1MC3 LINE L1 -23 7762 7203 1365 163 116 0 chr4 139977182 139977318 -44311344 - AluJo SINE Alu -24 288 169 455 0 18 0 chr4 139977318 139977373 -44311289 + (TTA)n Simple_repeat Simple_repeat 2 57 0 1365 163 116 0 chr4 139977373 139977494 -44311168 - AluJo SINE Alu -143 169 1 25 0 0 0 chr4 139977496 139977521 -44311141 + AT_rich Low_complexity Low_complexity 1 25 0 733 232 77 12 chr4 139977586 139977832 -44310830 + MIR SINE MIR 1 262 0 1682 144 17 50 chr4 139978381 139978679 -44309983 + AluJo SINE Alu 1 288 -24 226 233 0 0 chr4 139978688 139978731 -44309931 - MER5A DNA MER1_type -14 175 133 338 324 51 65 chr4 139978784 139979216 -44309446 - L1MEd LINE L1 -5376 743 318 535 215 74 25 chr4 139979279 139979442 -44309220 + MER58C DNA MER1_type 44 214 -1 277 288 18 9 chr4 139979534 139979645 -44309017 - L1MEd LINE L1 -5964 155 44 2845 140 43 10 chr4 139979797 139980515 -44308147 - LTR1B LTR ERV1 0 826 14 369 0 0 0 chr4 139980626 139980667 -44307995 + (TG)n Simple_repeat Simple_repeat 2 42 0 1655 160 16 39 chr4 139980798 139981105 -44307557 - AluJo SINE Alu -11 301 2 2117 114 0 19 chr4 139982436 139982744 -44305918 + AluSx SINE Alu 1 302 -10 210 71 0 0 chr4 139982889 139982917 -44305745 + (T)n Simple_repeat Simple_repeat 1 28 0 759 169 0 0 chr4 139983473 139983626 -44305036 + FLAM_C SINE Alu 1 153 0 216 0 0 0 chr4 139989117 139989141 -44299521 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1179 161 179 0 chr4 139990069 139990343 -44298319 + MER33 DNA MER1_type 1 323 -1 240 35 0 0 chr4 139990545 139990574 -44298088 + (T)n Simple_repeat Simple_repeat 1 29 0 223 347 42 11 chr4 139991306 139991401 -44297261 - MIR3 SINE MIR -22 186 89 406 283 119 11 chr4 139993736 139993913 -44294749 + L1ME4a LINE L1 5188 5383 -763 477 264 42 19 chr4 139994095 139994311 -44294351 + L1ME4a LINE L1 5690 5910 -211 279 250 66 7 chr4 139994318 139994454 -44294208 + L1ME4a LINE L1 5960 6103 -18 447 349 87 47 chr4 139994454 139994878 -44293784 - L2 LINE L2 -4 3268 2828 300 53 0 0 chr4 139995450 139995488 -44293174 + (TG)n Simple_repeat Simple_repeat 1 38 0 271 283 38 0 chr4 139995510 139995616 -44293046 - HAL1 LINE L1 -2199 308 199 256 297 51 8 chr4 139995616 139995734 -44292928 - MER91C DNA MER1_type 0 140 18 414 261 46 20 chr4 139995755 139995908 -44292754 - HAL1 LINE L1 -2303 204 48 207 0 0 0 chr4 139995984 139996007 -44292655 + (TC)n Simple_repeat Simple_repeat 2 24 0 304 325 25 45 chr4 139996056 139996213 -44292449 + MIR3 SINE MIR 30 183 -25 205 281 0 18 chr4 139996246 139996303 -44292359 + L2 LINE L2 3256 3311 -2 234 176 118 29 chr4 139997306 139997374 -44291288 - MIR SINE MIR -64 198 125 1243 284 99 41 chr4 139997417 139998051 -44290611 - L2 LINE L2 -534 2780 2110 690 301 39 23 chr4 139998051 139998360 -44290302 + MER102a DNA MER1_type 1 314 -16 1759 142 42 0 chr4 139998681 139998969 -44289693 - AluJb SINE Alu -12 300 1 445 143 0 0 chr4 139999568 139999638 -44289024 - AluJo SINE Alu -19 293 224 845 194 0 0 chr4 139999638 139999777 -44288885 - AluSg/x SINE Alu -35 275 137 811 199 189 16 chr4 139999777 139999968 -44288694 - AluJo SINE Alu -88 224 1 454 308 39 16 chr4 139999981 140000163 -44288499 - MIR SINE MIR -66 196 11 1622 189 3 32 chr4 140000167 140000479 -44288183 - AluJo SINE Alu -9 303 1 229 267 163 30 chr4 140001560 140001695 -44286967 - MIR SINE MIR -2 260 108 248 333 37 105 chr4 140002560 140002911 -44285751 - L2 LINE L2 -5 3267 2941 9532 190 41 38 chr4 140003061 140003168 -44285494 - L1M3 LINE L1 -651 5517 5412 1867 166 7 23 chr4 140003168 140003476 -44285186 - AluSx SINE Alu -9 303 1 9532 190 41 38 chr4 140003476 140004573 -44284089 - L1M3 LINE L1 -756 5412 4320 1603 170 23 8 chr4 140004573 140004838 -44283824 + AluJo SINE Alu 30 298 -14 9532 190 41 38 chr4 140004838 140005645 -44283017 - L1M3 LINE L1 -1848 4320 3517 246 32 0 0 chr4 140005645 140005676 -44282986 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9532 190 41 38 chr4 140005676 140006170 -44282492 - L1M3 LINE L1 -2651 3517 3026 1850 179 0 3 chr4 140006170 140006467 -44282195 - AluJb SINE Alu -16 296 1 9532 190 41 38 chr4 140006467 140006596 -44282066 - L1M3 LINE L1 -3142 3026 2869 1618 191 0 30 chr4 140006596 140006894 -44281768 + AluJo SINE Alu 1 289 -23 9532 190 41 38 chr4 140006894 140006948 -44281714 - L1M3 LINE L1 -3299 2869 2817 3156 199 67 9 chr4 140008350 140009143 -44279519 - L1 LINE L1 -794 6771 5933 1402 185 43 28 chr4 140009918 140010242 -44278420 - L1 LINE L1 -7230 335 7 1280 244 16 82 chr4 140010647 140011222 -44277440 + L1MC4 LINE L1 6508 7044 -998 5702 100 1 1 chr4 140011323 140012120 -44276542 - HERVL LTR ERVL -1826 3828 3032 353 303 19 0 chr4 140012226 140012381 -44276281 - L1MD1 LINE L1 -8 6234 6077 201 74 0 0 chr4 140012410 140012437 -44276225 + (TG)n Simple_repeat Simple_repeat 2 28 0 253 277 0 48 chr4 140012437 140012520 -44276142 - L1MD2 LINE L1 -231 6128 6050 4358 153 22 0 chr4 140013023 140013779 -44274883 + L1P LINE L1 1 773 -5373 961 331 95 34 chr4 140013881 140014515 -44274147 - L2 LINE L2 -214 3099 2427 3252 196 14 14 chr4 140014689 140015449 -44273213 + L1 LINE L1 3386 4145 -2001 813 330 129 37 chr4 140015582 140016124 -44272538 + L2 LINE L2 76 667 -2647 5116 69 1 1 chr4 140016356 140017053 -44271609 - L1P LINE L1 -1946 4200 3504 2302 136 3 11 chr4 140017154 140017536 -44271126 + MLT2A1 LTR ERVL 26 404 -40 413 136 45 8 chr4 140017536 140017668 -44270994 + (TA)n Simple_repeat Simple_repeat 1 137 0 2631 127 2 2 chr4 140017669 140018087 -44270575 + HERVL-A1 LTR ERVL 72 489 -5165 2359 219 8 52 chr4 140018200 140018815 -44269847 - L1M1 LINE L1 -5657 1908 1321 945 200 131 20 chr4 140018832 140019077 -44269585 - L1M1 LINE L1 -7059 506 235 2064 119 83 16 chr4 140019168 140019332 -44269330 - L1MA2 LINE L1 0 6304 6153 3282 122 16 6 chr4 140019332 140019841 -44268821 + MER75 DNA T2_type 1 514 0 2064 119 83 16 chr4 140019841 140020061 -44268601 - L1MA2 LINE L1 -151 6153 5894 3223 236 15 24 chr4 140020167 140021272 -44267390 - L1M4c LINE L1 -4520 1793 800 1538 154 6 80 chr4 140021597 140021728 -44266934 + MLT2C1 LTR ERVL 79 218 -179 1908 144 0 24 chr4 140021728 140022019 -44266643 + AluSx SINE Alu 1 284 -28 222 62 0 0 chr4 140022019 140022051 -44266611 + (CCAA)n Simple_repeat Simple_repeat 2 33 0 1538 154 6 80 chr4 140022051 140022255 -44266407 + MLT2C1 LTR ERVL 216 390 -7 430 354 0 8 chr4 140022264 140022394 -44266268 + L2 LINE L2 3185 3313 0 219 338 49 28 chr4 140022524 140022666 -44265996 + L2 LINE L2 2591 2735 -579 232 164 104 45 chr4 140022675 140022742 -44265920 - L2 LINE L2 -49 3223 3153 538 249 221 5 chr4 140024175 140024388 -44264274 - MIR SINE MIR -1 261 3 339 226 0 0 chr4 140024478 140024540 -44264122 + MIR SINE MIR 103 164 -98 309 336 57 0 chr4 140024549 140024689 -44263973 + MLT1I LTR MaLR 14 161 -248 521 246 105 12 chr4 140024716 140024887 -44263775 + MLT1I LTR MaLR 221 407 -2 1218 173 49 4 chr4 140025204 140025429 -44263233 + MER46A DNA MER2_type 2 236 0 1842 153 10 19 chr4 140025852 140026166 -44262496 - AluSx SINE Alu -1 311 1 645 35 53 0 chr4 140026848 140026961 -44261701 + (TA)n Simple_repeat Simple_repeat 2 120 0 727 180 16 60 chr4 140027440 140027623 -44261039 - L1M4 LINE L1 -809 5337 5163 852 206 12 12 chr4 140027623 140027793 -44260869 - AluJ SINE Alu -13 299 130 694 239 67 0 chr4 140027793 140028002 -44260660 - L1M4 LINE L1 -979 5167 4945 314 229 0 0 chr4 140028015 140028085 -44260577 + LTR33A LTR ERVL 439 508 -15 197 167 0 0 chr4 140028251 140028287 -44260375 + MIR SINE MIR 119 154 -108 202 259 19 37 chr4 140029742 140029796 -44258866 - MIR3 SINE MIR -14 194 142 858 118 0 76 chr4 140030041 140030185 -44258477 - AluJ SINE Alu -179 133 1 555 308 108 18 chr4 140030686 140030965 -44257697 + L2 LINE L2 3008 3311 -2 378 313 84 37 chr4 140031193 140031407 -44257255 - L1MC4a LINE L1 -1878 5930 5707 1585 219 22 11 chr4 140031422 140031792 -44256870 + MLT1A2 LTR MaLR 1 374 0 281 231 33 107 chr4 140032258 140032379 -44256283 - MIR SINE MIR -118 144 33 700 144 34 75 chr4 140032577 140032723 -44255939 + MER2 DNA MER2_type 1 140 -205 * 1904 128 18 33 chr4 140032721 140033050 -44255612 + MER1B DNA MER1_type 16 339 0 477 96 0 0 chr4 140033050 140033123 -44255539 + MER2 DNA MER2_type 132 204 -141 1776 141 7 28 chr4 140033793 140034084 -44254578 + AluJo SINE Alu 12 296 -16 6543 8 0 0 chr4 140036874 140037641 -44251021 + L1HS LINE L1 5326 6092 -63 312 313 36 17 chr4 140038362 140038493 -44250169 - MER5A DNA MER1_type -11 167 34 307 277 193 18 chr4 140038533 140038718 -44249944 + MIR SINE MIR 19 234 -28 737 185 116 32 chr4 140038759 140038948 -44249714 - MIR SINE MIR -10 252 48 216 209 0 0 chr4 140039642 140039685 -44248977 + (TATG)n Simple_repeat Simple_repeat 2 44 0 399 293 92 52 chr4 140040211 140040460 -44248202 - Charlie8 DNA MER1_type -2158 259 1 225 154 0 0 chr4 140040561 140040600 -44248062 + (TG)n Simple_repeat Simple_repeat 1 39 0 351 44 0 0 chr4 140040944 140040989 -44247673 + (TC)n Simple_repeat Simple_repeat 2 46 0 279 0 0 0 chr4 140040988 140041019 -44247643 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 262 125 250 0 chr4 140041042 140041106 -44247556 - MADE1 DNA Mariner 0 80 1 707 223 61 69 chr4 140041786 140042029 -44246633 - MIR SINE MIR -6 256 20 400 387 53 29 chr4 140042607 140042984 -44245678 - L2 LINE L2 0 3272 2887 21 0 0 0 chr4 140043581 140043602 -44245060 + AT_rich Low_complexity Low_complexity 1 21 0 377 231 239 22 chr4 140044092 140044226 -44244436 - MIR3 SINE MIR -9 199 37 186 133 0 0 chr4 140046217 140046247 -44242415 + (TA)n Simple_repeat Simple_repeat 2 31 0 27 29 0 0 chr4 140047339 140047373 -44241289 + AT_rich Low_complexity Low_complexity 1 34 0 590 158 127 63 chr4 140047397 140047555 -44241107 - MER2 DNA MER2_type -177 168 1 770 234 88 40 chr4 140048722 140048949 -44239713 + MIR SINE MIR 3 240 -22 188 313 0 0 chr4 140049630 140049678 -44238984 - L2 LINE L2 -6 3266 3219 224 272 18 97 chr4 140050145 140050259 -44238403 + MIR3 SINE MIR 76 180 -28 392 178 15 0 chr4 140050272 140050353 -44238309 + MER3 DNA MER1_type 38 2333 0 547 159 274 25 chr4 140050524 140050725 -44237937 + MER3 DNA MER1_type 2372 2622 0 375 239 67 22 chr4 140051007 140051141 -44237521 + L1ME4a LINE L1 5979 6118 -3 394 318 139 22 chr4 140053025 140053299 -44235363 - L3 LINE CR1 -38 1539 1234 225 0 0 0 chr4 140053973 140053998 -44234664 + (A)n Simple_repeat Simple_repeat 1 25 0 1968 104 41 0 chr4 140054005 140054300 -44234362 + AluSc SINE Alu 1 306 0 321 348 93 42 chr4 140054541 140054800 -44233862 + L2 LINE L2 2985 3256 -16 185 0 40 0 chr4 140055962 140055987 -44232675 + (CAAAAA)n Simple_repeat Simple_repeat 5 30 0 190 366 80 9 chr4 140056372 140056484 -44232178 + L3b LINE CR1 1447 1566 -17 37265 38 4 0 chr4 140056675 140062220 -44226442 + L1PA3 LINE L1 603 6155 0 14153 35 0 0 chr4 140062217 140064010 -44224652 + L1P LINE L1 3225 5017 -1129 * 7568 31 2 0 chr4 140064115 140065412 -44223250 + L1PA4 LINE L1 4873 6154 -1 262 236 4 0 chr4 140067420 140067487 -44221175 - MIR SINE MIR -103 105 38 2473 108 84 30 chr4 140068586 140068919 -44219743 + MSTA LTR MaLR 1 361 -67 2293 123 0 0 chr4 140068919 140069229 -44219433 - AluSx SINE Alu -2 310 1 2473 108 84 30 chr4 140069229 140069301 -44219361 + MSTA LTR MaLR 361 428 0 213 227 0 0 chr4 140069322 140069366 -44219296 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 2517 66 0 0 chr4 140069824 140070126 -44218536 - AluY SINE Alu -9 302 1 251 230 0 0 chr4 140070130 140070196 -44218466 + MLT2C2 LTR ERVL 408 464 0 294 266 55 83 chr4 140070196 140070305 -44218357 + L2 LINE L2 3184 3289 -24 234 276 128 43 chr4 140070794 140070904 -44217758 + L1ME4a LINE L1 5713 5812 -309 2093 146 0 0 chr4 140070904 140071206 -44217456 - AluSx SINE Alu -10 302 1 234 276 128 43 chr4 140071206 140071446 -44217216 + L1ME4a LINE L1 5812 6093 -28 495 0 0 0 chr4 140073252 140073307 -44215355 + (TG)n Simple_repeat Simple_repeat 2 56 0 329 370 19 6 chr4 140073553 140073715 -44214947 + L2 LINE L2 2555 2718 -596 435 255 120 21 chr4 140073958 140074036 -44214626 + L1ME4a LINE L1 5653 5722 -399 180 0 0 0 chr4 140074036 140074056 -44214606 + (TG)n Simple_repeat Simple_repeat 2 21 0 435 255 120 21 chr4 140074056 140074169 -44214493 + L1ME4a LINE L1 5722 5863 -258 1142 189 48 56 chr4 140074221 140074650 -44214012 + MER66A LTR ERV1 141 468 -10 281 284 34 0 chr4 140075295 140075383 -44213279 - L2 LINE L2 -656 2658 2568 208 268 0 24 chr4 140075395 140075477 -44213185 + (TAA)n Simple_repeat Simple_repeat 2 81 0 843 194 39 0 chr4 140075639 140075819 -44212843 + L1MB3 LINE L1 5997 6183 0 706 158 193 55 chr4 140076237 140076439 -44212223 - MER46A DNA MER2_type -3 233 4 202 331 117 28 chr4 140077247 140077392 -44211270 + L2 LINE L2 3104 3261 -11 249 275 11 11 chr4 140079041 140079142 -44209520 + L1MC/D LINE L1 5725 5825 -296 301 270 45 22 chr4 140079142 140079231 -44209431 + L1MC4 LINE L1 6614 6704 -1338 * 336 232 84 11 chr4 140079202 140079297 -44209365 - L1MC4 LINE L1 -1339 6703 6602 1568 149 6 104 chr4 140080123 140080451 -44208211 - AluJo SINE Alu -16 296 1 27 29 0 0 chr4 140080624 140080658 -44208004 + AT_rich Low_complexity Low_complexity 1 34 0 199 276 0 0 chr4 140080709 140080767 -44207895 - MER5B DNA MER1_type -23 155 98 21 0 0 0 chr4 140080927 140080948 -44207714 + AT_rich Low_complexity Low_complexity 1 21 0 761 133 0 9 chr4 140082261 140082374 -44206288 - FLAM_C SINE Alu -20 123 12 459 306 105 18 chr4 140083989 140084218 -44204444 - MIR SINE MIR 0 262 14 265 258 17 0 chr4 140084236 140084356 -44204306 + (CAGC)n Simple_repeat Simple_repeat 2 123 0 274 311 66 115 chr4 140084684 140084989 -44203673 + L2 LINE L2 2960 3249 -23 200 361 24 0 chr4 140084984 140085067 -44203595 - L2 LINE L2 -2 3311 3227 * 2114 97 3 20 chr4 140085657 140085957 -44202705 - AluSg SINE Alu -15 295 1 1894 151 54 3 chr4 140086476 140086807 -44201855 - MER7A DNA MER2_type 0 346 1 1743 164 30 7 chr4 140087854 140088152 -44200510 - AluSx SINE Alu -7 305 1 519 323 26 16 chr4 140088995 140089184 -44199478 + MIR3 SINE MIR 2 192 -16 7123 25 15 0 chr4 140090261 140091646 -44197016 + L1PA3 LINE L1 4698 6099 -56 719 138 105 53 chr4 140091746 140091898 -44196764 - MER2 DNA MER2_type -184 161 2 750 294 103 18 chr4 140093485 140093825 -44194837 + L2 LINE L2 2119 2487 -827 314 236 42 0 chr4 140093934 140094006 -44194656 + MER21B LTR ERV1 16 90 -773 1016 164 5 66 chr4 140094092 140094305 -44194357 + MER21B LTR ERV1 137 336 -527 544 317 91 5 chr4 140094519 140094705 -44193957 - MIR SINE MIR -57 205 4 572 154 154 7 chr4 140095575 140095711 -44192951 - MER3 DNA MER1_type -17 192 37 293 221 16 16 chr4 140095711 140095838 -44192824 + (TA)n Simple_repeat Simple_repeat 1 127 0 377 234 76 76 chr4 140096001 140096172 -44192490 - MIR SINE MIR 0 262 92 389 242 126 51 chr4 140096197 140096490 -44192172 + L1ME4a LINE L1 5800 6114 -7 750 189 194 0 chr4 140096688 140096863 -44191799 + MER3 DNA MER1_type 1 209 0 294 189 0 0 chr4 140096820 140096873 -44191789 - MER3 DNA MER1_type -119 90 38 * 229 271 77 19 chr4 140097046 140097201 -44191461 + L1MC4a LINE L1 3812 3975 -2171 798 241 30 39 chr4 140097526 140097758 -44190904 + MIR SINE MIR 12 241 -21 366 325 66 22 chr4 140097816 140098044 -44190618 + L1MC4a LINE L1 4349 4586 -1560 262 345 9 13 chr4 140098137 140098366 -44190296 + L1MC4a LINE L1 4742 4969 -1177 3471 200 38 37 chr4 140098494 140099353 -44189309 + L1MA9 LINE L1 5415 6274 -38 22 35 0 0 chr4 140099353 140099382 -44189280 + AT_rich Low_complexity Low_complexity 1 29 0 1937 141 0 30 chr4 140099384 140099683 -44188979 + AluSx SINE Alu 3 292 -20 1003 277 153 16 chr4 140099816 140100397 -44188265 + L1MC4a LINE L1 5270 5816 -350 40 0 0 0 chr4 140102163 140102203 -44186459 + AT_rich Low_complexity Low_complexity 1 40 0 2113 138 0 6 chr4 140103080 140103391 -44185271 - AluSx SINE Alu -1 311 3 500 298 32 0 chr4 140105636 140105824 -44182838 + L1M4 LINE L1 3706 3899 -2247 442 313 142 18 chr4 140105832 140106113 -44182549 + MLT1J LTR MaLR 14 329 -182 271 55 18 36 chr4 140106494 140106549 -44182113 + L1MA9 LINE L1 6259 6312 0 349 278 61 50 chr4 140106684 140106864 -44181798 - L1MEd LINE L1 -4864 1255 1074 3087 211 86 38 chr4 140106882 140106925 -44181737 - L1MD2 LINE L1 -20 6339 6300 2369 102 3 0 chr4 140106925 140107230 -44181432 + AluSx SINE Alu 2 307 -5 3087 211 86 38 chr4 140107230 140108057 -44180605 - L1MD2 LINE L1 -59 6300 5427 406 169 13 13 chr4 140108181 140108258 -44180404 + Tigger2 DNA MER2_type 1 77 -2641 1867 163 0 10 chr4 140108305 140108599 -44180063 + AluJb SINE Alu 3 293 -19 568 212 42 73 chr4 140108604 140108769 -44179893 - MER8 DNA MER2_type -79 160 1 1021 316 118 57 chr4 140109288 140110397 -44178265 + L2 LINE L2 252 1428 -1886 180 358 0 12 chr4 140110416 140110497 -44178165 + MIR SINE MIR 183 262 0 367 212 178 34 chr4 140110774 140110920 -44177742 + MLT1K LTR MaLR 395 561 -27 25 31 0 0 chr4 140112284 140112316 -44176346 + AT_rich Low_complexity Low_complexity 1 32 0 1211 204 43 9 chr4 140112337 140112567 -44176095 + MER8 DNA MER2_type 2 239 0 313 271 107 28 chr4 140112701 140112878 -44175784 + MIR SINE MIR 72 262 0 1950 153 7 0 chr4 140113375 140113669 -44174993 - AluSx SINE Alu -13 299 4 2146 106 43 27 chr4 140113819 140114188 -44174474 + THE1C LTR MaLR 1 375 0 15739 137 33 18 chr4 140114521 140117069 -44171593 - Tigger4(Zombi) DNA MER2_type 0 2731 138 1921 164 3 0 chr4 140117069 140117368 -44171294 - AluSx SINE Alu -12 300 1 15739 137 33 18 chr4 140117368 140117509 -44171153 - Tigger4(Zombi) DNA MER2_type -2593 138 1 1373 265 85 13 chr4 140117919 140118376 -44170286 + LTR16C LTR ERVL 1 490 -1 1341 166 31 48 chr4 140118866 140119222 -44169440 + Charlie5 DNA MER1_type 2275 2624 0 255 297 81 0 chr4 140119633 140119707 -44168955 - MIR3 SINE MIR -42 166 87 477 274 79 5 chr4 140119824 140120014 -44168648 - HAL1 LINE L1 -112 2395 2192 5351 212 31 8 chr4 140120097 140121793 -44166869 + L1PA16 LINE L1 4128 5859 -307 1330 26 0 0 chr4 140121826 140121980 -44166682 - L1PA5 LINE L1 -9 6145 5992 2873 35 0 0 chr4 140121981 140122323 -44166339 + L1PA5 LINE L1 5642 5983 -172 6292 78 0 7 chr4 140123669 140124854 -44163808 - L1PA10 LINE L1 -1 6167 4978 851 193 6 28 chr4 140125548 140125729 -44162933 + FRAM SINE Alu 1 176 0 1888 175 159 0 chr4 140126497 140126886 -44161776 - MLT1D LTR MaLR -54 451 1 245 29 29 0 chr4 140127846 140127880 -44160782 + (CA)n Simple_repeat Simple_repeat 1 35 0 6474 112 15 17 chr4 140128216 140128560 -44160102 - L1MA3 LINE L1 0 6305 5962 2909 154 10 14 chr4 140128560 140129048 -44159614 - MER66B LTR ERV1 0 486 1 6474 112 15 17 chr4 140129048 140129757 -44158905 - L1MA3 LINE L1 -343 5962 5254 344 226 135 54 chr4 140129807 140129999 -44158663 + MIR SINE MIR 2 212 -50 361 206 40 148 chr4 140130466 140130689 -44157973 + L1MC/D LINE L1 5609 5807 -2001 1273 88 0 6 chr4 140130721 140130881 -44157781 + AluSg SINE Alu 1 159 -151 836 71 0 0 chr4 140130973 140131071 -44157591 + AluSg SINE Alu 159 256 -54 1550 202 67 21 chr4 140131572 140131944 -44156718 + MLT1B LTR MaLR 1 389 -1 198 0 0 0 chr4 140132382 140132404 -44156258 + (CTG)n Simple_repeat Simple_repeat 1 22 0 2108 123 0 10 chr4 140133033 140133502 -44155160 + AluSx SINE Alu 1 466 0 22 80 0 0 chr4 140135019 140135069 -44153593 + AT_rich Low_complexity Low_complexity 1 50 0 200 98 0 49 chr4 140135586 140135627 -44153035 + (TATATG)n Simple_repeat Simple_repeat 3 41 0 232 276 224 20 chr4 140136295 140136447 -44152215 + MIR3 SINE MIR 4 186 -22 334 345 9 0 chr4 140136480 140136590 -44152072 + L2 LINE L2 3202 3312 -1 381 43 0 0 chr4 140137135 140137182 -44151480 + (CA)n Simple_repeat Simple_repeat 1 47 0 385 289 8 171 chr4 140137649 140138012 -44150650 - L2 LINE L2 -1 3271 2968 570 314 132 31 chr4 140138582 140139059 -44149603 - L2 LINE L2 -752 2562 2038 2741 3 0 3 chr4 140139360 140139658 -44149004 + AluYa5 SINE Alu 1 297 -14 236 272 33 0 chr4 140139763 140139855 -44148807 - L1MC4 LINE L1 -1334 6708 6614 203 363 44 56 chr4 140140916 140141076 -44147586 + MIR3 SINE MIR 43 200 -8 1561 268 55 28 chr4 140141829 140142593 -44146069 - L1M4 LINE L1 -810 5336 4552 512 274 38 50 chr4 140142590 140142822 -44145840 + L1ME LINE L1 5396 5637 -525 * 533 189 45 213 chr4 140142904 140143195 -44145467 + MIR SINE MIR 21 262 0 421 205 172 13 chr4 140144019 140144170 -44144492 - MER115 DNA AcHobo 0 693 519 794 294 282 0 chr4 140144203 140144543 -44144119 - MER115 DNA AcHobo -257 436 1 187 280 113 67 chr4 140145123 140145273 -44143389 + MIR SINE MIR 93 249 -13 557 88 0 152 chr4 140146083 140146208 -44142454 + AluSc SINE Alu 3 108 -201 1718 98 105 63 chr4 140146525 140146811 -44141851 + AluSc SINE Alu 3 300 -9 298 278 48 63 chr4 140147130 140147382 -44141280 + L1MC5 LINE L1 7660 7907 -54 381 172 0 0 chr4 140147421 140147485 -44141177 - MIR SINE MIR -123 139 76 5657 170 53 11 chr4 140147711 140149780 -44138882 - L1MA7 LINE L1 -6 6285 4132 560 285 28 33 chr4 140149788 140150002 -44138660 - L1M3b LINE L1 -6068 213 1 1405 220 93 28 chr4 140150252 140150639 -44138023 + MER66A LTR ERV1 27 438 -40 309 325 41 32 chr4 140150973 140151096 -44137566 - L3 LINE CR1 -7 1570 1447 312 346 48 21 chr4 140151137 140151325 -44137337 + L2 LINE L2 2282 2474 -840 3334 159 20 30 chr4 140151331 140151986 -44136676 - L1MC1 LINE L1 -6 6327 5680 185 250 104 31 chr4 140152076 140152172 -44136490 - MIR SINE MIR -96 166 64 432 0 0 0 chr4 140153042 140153090 -44135572 + (TA)n Simple_repeat Simple_repeat 2 49 0 446 296 99 14 chr4 140154103 140154245 -44134417 + MER91A DNA MER1_type 21 174 -22 1785 198 34 33 chr4 140154630 140155098 -44133564 - MER31B LTR ERV1 0 661 1 1088 161 129 14 chr4 140156876 140156955 -44131707 - MER33 DNA MER1_type -2262 323 255 306 0 0 0 chr4 140156955 140156989 -44131673 + (ATG)n Simple_repeat Simple_repeat 1 34 0 1728 156 3 37 chr4 140156989 140157284 -44131378 - AluSx SINE Alu -27 285 1 1088 161 129 14 chr4 140157284 140157489 -44131173 - MER33 DNA MER1_type -2329 256 5 678 337 96 33 chr4 140157624 140158324 -44130338 + L1MEd LINE L1 4 747 -5372 644 258 63 60 chr4 140158324 140158658 -44130004 - LTR24B LTR ERV1 -6 570 236 344 200 0 0 chr4 140158741 140158801 -44129861 - LTR24B LTR ERV1 -499 77 18 236 264 40 92 chr4 140158833 140159106 -44129556 + L1MEd LINE L1 755 1013 -5106 1376 245 33 15 chr4 140159960 140160291 -44128371 + MLT1A1 LTR MaLR 1 337 -28 910 264 118 10 chr4 140161612 140161900 -44126762 + MLT1J1 LTR MaLR 1 319 -127 243 215 0 101 chr4 140161909 140161988 -44126674 - L1MC/D LINE L1 -2015 5793 5723 312 48 0 0 chr4 140162036 140162078 -44126584 + (T)n Simple_repeat Simple_repeat 1 42 0 24 32 0 0 chr4 140162862 140162893 -44125769 + AT_rich Low_complexity Low_complexity 1 31 0 351 348 125 15 chr4 140163029 140163307 -44125355 + MLT1J1 LTR MaLR 13 319 -127 294 50 0 0 chr4 140163448 140163488 -44125174 + (T)n Simple_repeat Simple_repeat 1 40 0 4046 166 52 32 chr4 140165252 140165450 -44123212 + L1MB2 LINE L1 5186 5378 -793 2167 100 7 0 chr4 140165450 140165740 -44122922 + AluY SINE Alu 1 292 -19 4046 166 52 32 chr4 140165740 140166518 -44122144 + L1MB2 LINE L1 5378 6170 -1 22 0 0 0 chr4 140166518 140166540 -44122122 + AT_rich Low_complexity Low_complexity 1 22 0 4692 147 40 63 chr4 140166622 140168151 -44120511 + L1MA9 LINE L1 4819 6312 0 531 194 32 97 chr4 140168322 140168508 -44120154 + L1MA9 LINE L1 6132 6305 -7 15486 124 21 3 chr4 140168606 140170957 -44117705 - Tigger1 DNA MER2_type 0 2418 25 185 284 30 60 chr4 140171705 140171772 -44116890 - L2 LINE L2 -2 3311 3247 705 190 37 0 chr4 140172278 140172441 -44116221 - L1MB2 LINE L1 -2 6169 6001 22 35 0 0 chr4 140173911 140173940 -44114722 + AT_rich Low_complexity Low_complexity 1 29 0 1893 162 0 3 chr4 140174314 140174610 -44114052 + AluJb SINE Alu 3 297 -15 392 245 49 21 chr4 140175212 140175355 -44113307 + GA-rich Low_complexity Low_complexity 3 149 0 286 267 0 0 chr4 140175761 140175836 -44112826 + LTR43 LTR ERV1 222 296 -306 584 239 31 0 chr4 140176456 140176586 -44112076 + MER94 DNA DNA 1 134 0 284 79 0 0 chr4 140179341 140179379 -44109283 - MADE1 DNA Mariner -42 38 1 205 238 63 32 chr4 140180359 140180422 -44108240 - MIR SINE MIR -38 224 160 231 36 0 0 chr4 140181177 140181205 -44107457 + (CA)n Simple_repeat Simple_repeat 1 28 0 673 286 97 9 chr4 140181348 140181575 -44107087 - MIR SINE MIR -14 248 2 2330 97 0 0 chr4 140181924 140182249 -44106413 - AluSq SINE Alu 0 313 1 21 0 0 0 chr4 140183976 140183997 -44104665 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr4 140184191 140184220 -44104442 + AT_rich Low_complexity Low_complexity 1 29 0 1788 181 0 7 chr4 140184856 140185160 -44103502 + AluJo SINE Alu 3 304 -8 201 275 14 0 chr4 140186313 140186382 -44102280 + (TA)n Simple_repeat Simple_repeat 2 71 0 218 227 0 0 chr4 140186500 140186544 -44102118 + (TA)n Simple_repeat Simple_repeat 2 45 0 582 114 0 0 chr4 140186642 140186721 -44101941 - THE1B LTR MaLR -285 79 1 11361 96 15 4 chr4 140186721 140188283 -44100379 - THE1B-int LTR MaLR 0 1580 2 2086 143 36 17 chr4 140188285 140188641 -44100021 - THE1B LTR MaLR -1 363 1 2242 128 0 0 chr4 140188773 140189079 -44099583 - AluSx SINE Alu -4 308 3 359 256 231 13 chr4 140189120 140189276 -44099386 - MER102b DNA MER1_type -49 292 103 488 240 27 34 chr4 140189377 140189523 -44099139 + MIR SINE MIR 100 244 -18 379 252 26 9 chr4 140191668 140191783 -44096879 - Looper DNA T2_type -5 1553 1437 * 823 169 58 11 chr4 140191780 140191969 -44096693 - Looper DNA T2_type -1346 212 15 813 261 12 35 chr4 140191970 140192227 -44096435 + L1MEd LINE L1 963 1213 -4906 728 168 0 8 chr4 140192665 140192784 -44095878 + FLAM_C SINE Alu 1 118 -15 22 0 0 0 chr4 140193331 140193353 -44095309 + AT_rich Low_complexity Low_complexity 1 22 0 515 258 23 8 chr4 140193394 140193526 -44095136 + MIR SINE MIR 55 188 -74 264 250 0 0 chr4 140193528 140193588 -44095074 + Looper DNA T2_type 6 65 -1493 247 147 15 162 chr4 140193588 140193656 -44095006 + MIR SINE MIR 205 262 0 43 88 0 0 chr4 140193656 140193769 -44094893 + AT_rich Low_complexity Low_complexity 1 113 0 1367 104 36 5 chr4 140193829 140194050 -44094612 - L1PB2 LINE L1 -15 6136 5909 22 0 0 0 chr4 140194358 140194380 -44094282 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 140194449 140194472 -44094190 + AT_rich Low_complexity Low_complexity 1 23 0 288 296 10 20 chr4 140194664 140194762 -44093900 + GA-rich Low_complexity Low_complexity 3 99 0 572 347 24 20 chr4 140194950 140195198 -44093464 + MIR SINE MIR 12 260 -2 1844 167 3 10 chr4 140196573 140196884 -44091778 + AluJo SINE Alu 4 312 0 27 0 0 0 chr4 140197250 140197277 -44091385 + AT_rich Low_complexity Low_complexity 1 27 0 488 247 120 0 chr4 140197384 140197542 -44091120 + MER5B DNA MER1_type 2 178 0 356 297 36 9 chr4 140197580 140197691 -44090971 - MIR SINE MIR -65 143 30 275 290 43 36 chr4 140198025 140198163 -44090499 + L1ME LINE L1 5611 5749 -372 10321 104 16 2 chr4 140198743 140200306 -44088356 + L1P LINE L1 2963 4547 -1599 690 263 28 46 chr4 140200704 140200921 -44087741 - MIR SINE MIR -49 213 1 481 241 88 47 chr4 140201829 140201923 -44086739 - MIR SINE MIR 0 262 156 569 182 77 35 chr4 140201923 140202093 -44086569 + MER104 DNA MER2_type 3 179 -1 481 241 88 47 chr4 140202093 140202168 -44086494 - MIR SINE MIR -106 156 86 1521 110 5 5 chr4 140202354 140202563 -44086099 + AluSg/x SINE Alu 91 299 -11 191 255 90 53 chr4 140202709 140202865 -44085797 - MIR SINE MIR 0 262 101 423 291 130 74 chr4 140203051 140203285 -44085377 + L1MEd LINE L1 49 268 -5851 2205 102 3 0 chr4 140203285 140203578 -44085084 + AluY SINE Alu 1 294 -17 423 291 130 74 chr4 140203578 140204355 -44084307 + L1MEd LINE L1 268 1117 -5002 13497 29 1 1 chr4 140205646 140207276 -44081386 - L1P LINE L1 -1379 4767 3138 4717 21 0 0 chr4 140207274 140207980 -44080682 + L1P1 LINE L1 4832 5537 -618 * 2070 145 33 0 chr4 140209017 140209354 -44079308 - MER7A DNA MER2_type 0 346 1 1562 146 13 0 chr4 140210160 140210399 -44078263 - AluSx SINE Alu -16 296 55 2304 105 3 0 chr4 140210564 140210869 -44077793 + AluSp SINE Alu 1 306 -7 907 213 30 0 chr4 140211102 140211271 -44077391 - FAM SINE Alu 0 175 2 374 250 250 0 chr4 140211461 140211577 -44077085 + MIR SINE MIR 52 196 -66 235 232 18 0 chr4 140211884 140211940 -44076722 + (CA)n Simple_repeat Simple_repeat 2 58 0 191 328 0 0 chr4 140211978 140212036 -44076626 + L2 LINE L2 3242 3299 -14 364 296 79 25 chr4 140212125 140212328 -44076334 + L1ME LINE L1 5534 5747 -374 2119 155 29 0 chr4 140212702 140213051 -44075611 + L1PA16 LINE L1 5799 6157 -9 2159 115 0 0 chr4 140214421 140214708 -44073954 - AluSx SINE Alu -25 287 1 393 267 145 53 chr4 140215689 140215951 -44072711 - L2 LINE L2 0 3313 3028 23 33 0 0 chr4 140216254 140216284 -44072378 + AT_rich Low_complexity Low_complexity 1 30 0 2460 15 0 0 chr4 140217986 140218257 -44070405 - AluYa5 SINE Alu -4 307 37 1312 224 68 113 chr4 140220158 140220427 -44068235 + MLT1G LTR MaLR 1 227 -363 2586 105 6 3 chr4 140220427 140220790 -44067872 - THE1B LTR MaLR 0 364 1 1312 224 68 113 chr4 140220790 140221097 -44067565 + MLT1G LTR MaLR 227 546 -44 866 216 273 19 chr4 140221833 140222250 -44066412 - LTR33A LTR ERVL 0 523 1 957 195 65 28 chr4 140222577 140222792 -44065870 - MER58A DNA MER1_type -1 223 1 988 84 28 0 chr4 140223240 140223382 -44065280 + L1PB2 LINE L1 6003 6148 -3 24 67 0 0 chr4 140224236 140224281 -44064381 + AT_rich Low_complexity Low_complexity 1 45 0 1007 190 97 4 chr4 140224590 140224827 -44063835 + L1ME1 LINE L1 5645 5903 -263 443 213 106 16 chr4 140224829 140224983 -44063679 + L1ME1 LINE L1 6000 6164 0 254 0 0 0 chr4 140225949 140225977 -44062685 + AluY SINE Alu 17 44 -256 445 248 9 0 chr4 140226081 140226186 -44062476 - L2 LINE L2 -803 2511 2406 317 322 0 0 chr4 140226358 140226448 -44062214 + L1MC4 LINE L1 6614 6703 -1339 311 262 71 0 chr4 140226386 140226470 -44062192 - L1MC4 LINE L1 -1339 6703 6614 * 574 224 38 3 chr4 140226962 140227115 -44061547 + MIR SINE MIR 34 241 -21 227 208 75 0 chr4 140227248 140227301 -44061361 + MIR SINE MIR 122 178 -84 321 305 149 0 chr4 140227380 140227534 -44061128 + MIR SINE MIR 81 257 -5 378 0 0 0 chr4 140228143 140228185 -44060477 + (CA)n Simple_repeat Simple_repeat 2 43 0 443 304 62 46 chr4 140228311 140228617 -44060045 - L1M4 LINE L1 -3526 2620 2310 2449 111 21 13 chr4 140229094 140229480 -44059182 - L1PA14 LINE L1 -1 6160 5772 445 332 55 25 chr4 140230091 140230326 -44058336 + MIR SINE MIR 2 243 -19 270 0 0 0 chr4 140230792 140230822 -44057840 + (CA)n Simple_repeat Simple_repeat 2 31 0 285 333 108 0 chr4 140231949 140232069 -44056593 + L3 LINE CR1 582 714 -863 302 242 158 8 chr4 140232070 140232190 -44056472 + MLT1J LTR MaLR 4 141 -370 297 315 43 33 chr4 140232281 140232465 -44056197 + MLT1J LTR MaLR 324 509 -2 398 284 71 82 chr4 140232466 140232748 -44055914 + L3 LINE CR1 724 1002 -575 474 303 76 21 chr4 140232776 140233014 -44055648 - MER102b DNA MER1_type -13 328 78 205 270 122 27 chr4 140233081 140233155 -44055507 + L3 LINE CR1 1011 1091 -486 624 296 5 25 chr4 140233194 140233390 -44055272 + MIR SINE MIR 6 197 -65 620 306 86 55 chr4 140233421 140233839 -44054823 + L3 LINE CR1 1141 1571 -6 475 94 0 0 chr4 140234178 140234242 -44054420 + AluJ/FLAM SINE Alu 1 64 -248 194 288 0 68 chr4 140234343 140234416 -44054246 - L2 LINE L2 -48 3265 3198 3341 96 10 20 chr4 140234416 140234660 -44054002 + MER84 LTR ERVI 1 246 -261 3675 53 0 0 chr4 140234660 140235115 -44053547 - L1PA5 LINE L1 0 6154 5700 3341 96 10 20 chr4 140235115 140235381 -44053281 + MER84 LTR ERVI 246 506 -1 342 277 59 10 chr4 140235485 140235586 -44053076 - L2 LINE L2 -252 3061 2956 186 167 0 0 chr4 140237194 140237230 -44051432 + (CATA)n Simple_repeat Simple_repeat 2 37 0 443 278 110 49 chr4 140237371 140237616 -44051046 - L3 LINE CR1 -3 1574 1315 352 296 101 0 chr4 140237709 140237868 -44050794 - Charlie8 DNA MER1_type -2152 265 91 439 323 0 8 chr4 140237880 140238013 -44050649 - MIR3 SINE MIR -17 191 60 945 192 80 18 chr4 140238219 140238443 -44050219 + MIR SINE MIR 23 260 -2 197 250 77 0 chr4 140239320 140239372 -44049290 - MIR SINE MIR -8 254 199 40 21 0 0 chr4 140240920 140240967 -44047695 + GC_rich Low_complexity Low_complexity 1 47 0 3474 178 40 17 chr4 140241697 140242450 -44046212 + L1MB8 LINE L1 5404 6173 -5 323 103 0 17 chr4 140244024 140244082 -44044580 + (TG)n Simple_repeat Simple_repeat 1 57 0 737 185 7 15 chr4 140244443 140244578 -44044084 - MER5A DNA MER1_type -48 141 8 1341 231 211 6 chr4 140245642 140246135 -44042527 + L1MC4 LINE L1 6461 7054 -988 185 238 0 0 chr4 140246540 140246582 -44042080 + MIR3 SINE MIR 152 193 -15 284 301 62 34 chr4 140246727 140246873 -44041789 + L2 LINE L2 3164 3313 0 562 224 48 9 chr4 140246936 140247146 -44041516 + HsTC2 DNA Tc2 1676 1893 -5 429 287 80 36 chr4 140247160 140247486 -44041176 - L1ME LINE L1 -610 5511 5176 528 266 52 40 chr4 140248047 140248220 -44040442 + MIR3 SINE MIR 32 206 -2 28 0 0 0 chr4 140248676 140248704 -44039958 + AT_rich Low_complexity Low_complexity 1 28 0 6375 131 65 38 chr4 140250242 140251356 -44037306 - Tigger3b DNA MER2_type -1799 1229 78 2180 129 0 0 chr4 140251356 140251659 -44037003 - AluSx SINE Alu -9 303 1 6375 131 65 38 chr4 140251659 140251740 -44036922 - Tigger3b DNA MER2_type -2950 78 1 308 208 91 0 chr4 140253115 140253192 -44035470 + MER112 DNA MER1_type 88 171 -89 188 308 0 0 chr4 140254802 140254854 -44033808 - MIR3 SINE MIR -17 191 140 503 304 94 11 chr4 140255928 140256109 -44032553 + MIR SINE MIR 23 218 -44 202 329 51 77 chr4 140256340 140256653 -44032009 - L2 LINE L2 -3 3310 3006 475 341 61 61 chr4 140256720 140257081 -44031581 + L1ME LINE L1 3 363 -5707 237 81 27 0 chr4 140257125 140257162 -44031500 + MER4D LTR ERV1 279 316 -587 392 289 31 55 chr4 140257332 140257461 -44031201 + MER34B LTR ERV1 282 413 -152 1430 187 59 14 chr4 140257461 140257750 -44030912 - AluJo SINE Alu -10 302 1 392 289 31 55 chr4 140257750 140257911 -44030751 + MER34B LTR ERV1 413 565 0 285 122 0 0 chr4 140258142 140258191 -44030471 + MER20 DNA MER1_type 165 213 -6 221 368 11 11 chr4 140258241 140258336 -44030326 + MIR SINE MIR 50 144 -64 23 33 0 0 chr4 140259008 140259038 -44029624 + AT_rich Low_complexity Low_complexity 1 30 0 276 28 0 0 chr4 140259205 140259241 -44029421 - L1P LINE L1 -3937 2209 2174 17276 112 1 1 chr4 140259341 140262729 -44025933 + L1PA7 LINE L1 2751 6146 -8 566 107 0 0 chr4 140262737 140262821 -44025841 + MSTA-int LTR MaLR 1568 1651 0 2552 124 49 10 chr4 140262823 140263233 -44025429 + MSTA LTR MaLR 3 428 0 1304 271 59 13 chr4 140264803 140265279 -44023383 + L1MC4 LINE L1 7406 7903 -139 1719 280 76 81 chr4 140265553 140266654 -44022008 - L2 LINE L2 0 3313 2218 228 232 232 40 chr4 140267577 140267728 -44020934 + MIR SINE MIR 24 203 -59 1736 141 7 46 chr4 140267838 140268143 -44020519 + AluJo SINE Alu 1 293 -19 392 217 48 0 chr4 140268451 140268534 -44020128 + L2 LINE L2 3186 3272 0 589 252 107 64 chr4 140268549 140268783 -44019879 - MIR SINE MIR -12 250 7 302 238 36 12 chr4 140270149 140270233 -44018429 + MIR3 SINE MIR 123 208 0 1586 143 6 67 chr4 140270445 140270759 -44017903 + AluSx SINE Alu 13 307 -5 1660 315 162 29 chr4 140270889 140271779 -44016883 + L2 LINE L2 1191 2322 -992 2015 135 3 3 chr4 140271779 140272083 -44016579 - AluSx SINE Alu -8 304 1 1660 315 162 29 chr4 140272083 140272536 -44016126 + L2 LINE L2 2322 2713 -601 501 289 107 82 chr4 140272610 140273012 -44015650 + L2 LINE L2 2872 3283 -30 27 29 0 0 chr4 140273834 140273868 -44014794 + AT_rich Low_complexity Low_complexity 1 34 0 1198 178 33 0 chr4 140275873 140276087 -44012575 - AluJb SINE Alu -8 304 84 1020 265 90 34 chr4 140276107 140276519 -44012143 - MLT1J2 LTR MaLR -13 437 3 26 64 0 0 chr4 140276973 140277020 -44011642 + AT_rich Low_complexity Low_complexity 1 47 0 2015 122 17 7 chr4 140277369 140277657 -44011005 - AluSq SINE Alu -21 292 2 198 337 33 22 chr4 140277898 140277990 -44010672 - L2 LINE L2 -58 3214 3122 5050 76 9 6 chr4 140278157 140278858 -44009804 - L1PB1 LINE L1 0 6151 5449 1077 278 86 38 chr4 140279176 140279790 -44008872 + L2 LINE L2 2406 3313 0 1699 164 0 53 chr4 140279840 140280163 -44008499 - AluJo SINE Alu -6 306 1 360 146 0 0 chr4 140280272 140280327 -44008335 + AluSg SINE Alu 61 115 -185 444 19 0 0 chr4 140280327 140280380 -44008282 + (CA)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr4 140280594 140280616 -44008046 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr4 140281405 140281434 -44007228 + AT_rich Low_complexity Low_complexity 1 29 0 1011 118 0 0 chr4 140281741 140281893 -44006769 - L1PA10 LINE L1 -1 6167 6016 2130 135 8 34 chr4 140282103 140282489 -44006173 + MLT1B LTR MaLR 1 376 -14 895 253 19 8 chr4 140282787 140283044 -44005618 + MIR SINE MIR 1 260 -2 1706 201 32 53 chr4 140283941 140283990 -44004672 - MER49 LTR ERV1 -1 922 873 2053 114 3 48 chr4 140283990 140284305 -44004357 - AluSx SINE Alu -11 301 1 1706 201 32 53 chr4 140284305 140284899 -44003763 - MER49 LTR ERV1 -50 873 96 751 178 20 20 chr4 140285001 140285147 -44003515 - MER72 LTR ERV1 -576 146 1 1097 164 0 0 chr4 140285190 140285361 -44003301 - FRAM SINE Alu -13 163 1 25 0 0 0 chr4 140285472 140285497 -44003165 + AT_rich Low_complexity Low_complexity 1 25 0 1825 151 7 49 chr4 140285502 140285806 -44002856 + AluSx SINE Alu 1 291 -21 235 174 0 0 chr4 140285894 140285940 -44002722 - MLT1L LTR MaLR -7 608 563 198 259 0 37 chr4 140286712 140286766 -44001896 - MIR SINE MIR -76 132 81 2204 127 3 0 chr4 140286902 140287209 -44001453 + AluSg SINE Alu 1 308 -2 1314 205 17 62 chr4 140288040 140288396 -44000266 - MER58B DNA MER1_type 0 341 2 1938 161 6 3 chr4 140288420 140288731 -43999931 - AluJb SINE Alu 0 312 1 653 196 119 12 chr4 140288894 140289062 -43999600 + MER5A DNA MER1_type 3 188 -1 2527 137 41 12 chr4 140289421 140289837 -43998825 + MSTA LTR MaLR 1 428 0 8410 183 22 6 chr4 140289837 140291404 -43997258 + MSTA-int LTR MaLR 1 1592 -59 * 28729 125 10 58 chr4 140291400 140297427 -43991235 + L1P3 LINE L1 12 5737 -417 333 82 0 0 chr4 140297696 140297745 -43990917 + (GA)n Simple_repeat Simple_repeat 1 49 0 388 282 18 64 chr4 140298408 140298628 -43990034 - MLT1H LTR MaLR -231 318 109 2422 81 0 3 chr4 140298991 140299298 -43989364 + AluSq SINE Alu 2 307 -6 423 316 124 0 chr4 140299647 140299824 -43988838 - MIR SINE MIR -40 222 24 554 286 133 54 chr4 140300290 140300755 -43987907 + MLT1J LTR MaLR 1 502 -9 248 217 143 47 chr4 140301367 140301498 -43987164 + MIR SINE MIR 3 123 -85 * 428 215 33 145 chr4 140301487 140301729 -43986933 - L2 LINE L2 -5 3308 3094 1070 219 14 76 chr4 140301942 140302137 -43986525 - MLT1A2 LTR MaLR -32 342 177 1947 138 0 43 chr4 140302137 140302442 -43986220 - AluJb SINE Alu -18 294 3 1070 219 14 76 chr4 140302442 140302602 -43986060 - MLT1A2 LTR MaLR -197 177 9 1483 183 7 59 chr4 140303180 140303486 -43985176 + AluJo SINE Alu 1 290 -22 228 67 0 0 chr4 140303719 140303749 -43984913 + (TC)n Simple_repeat Simple_repeat 1 30 0 212 83 0 28 chr4 140304476 140304512 -43984150 + (TG)n Simple_repeat Simple_repeat 1 35 0 357 297 94 16 chr4 140305117 140305245 -43983417 + L2 LINE L2 2940 3077 -195 255 266 89 16 chr4 140306281 140306405 -43982257 - MLT1L LTR MaLR -8 607 475 7892 18 0 0 chr4 140308288 140309245 -43979417 + L1P LINE L1 3853 4809 -1337 1010 180 0 53 chr4 140309537 140309743 -43978919 + MLT1E1 LTR MaLR 1 195 -459 259 62 0 42 chr4 140309758 140309806 -43978856 + (TTTTA)n Simple_repeat Simple_repeat 1 46 0 28150 121 18 55 chr4 140309923 140311199 -43977463 - L1PA8 LINE L1 -55 6117 4796 288 0 0 0 chr4 140311199 140311231 -43977431 + (TG)n Simple_repeat Simple_repeat 1 32 0 28150 121 18 55 chr4 140311231 140312729 -43975933 - L1PA8 LINE L1 -1376 4796 3245 2286 89 3 19 chr4 140312729 140313044 -43975618 - AluY SINE Alu -1 310 1 28150 121 18 55 chr4 140313044 140316620 -43972042 - L1PA8 LINE L1 -2927 3245 12 1056 208 147 86 chr4 140316627 140317035 -43971627 + MLT1E1 LTR MaLR 178 610 -44 211 171 0 0 chr4 140317067 140317108 -43971554 - L2 LINE L2 0 3313 3273 376 250 143 36 chr4 140318719 140318971 -43969691 - L2 LINE L2 -67 3246 2968 1575 298 12 24 chr4 140319082 140319618 -43969044 + L2 LINE L2 2780 3311 -2 515 257 37 0 chr4 140319827 140319936 -43968726 - L2 LINE L2 -9 3304 3192 844 202 151 18 chr4 140321137 140321355 -43967307 + MIR SINE MIR 16 262 0 180 0 0 0 chr4 140321457 140321477 -43967185 + (CA)n Simple_repeat Simple_repeat 2 21 0 22 35 0 0 chr4 140323489 140323518 -43965144 + AT_rich Low_complexity Low_complexity 1 29 0 2430 100 0 0 chr4 140323944 140324254 -43964408 + AluY SINE Alu 1 310 -1 216 268 0 18 chr4 140324265 140324321 -43964341 + L2 LINE L2 3217 3271 -1 2008 57 7 0 chr4 140324484 140324767 -43963895 + L1P LINE L1 3253 3537 -2609 323 115 0 0 chr4 140324867 140324919 -43963743 - Alu SINE Alu -249 52 1 214 361 165 0 chr4 140325040 140325137 -43963525 - L2 LINE L2 0 3272 3160 2884 216 75 8 chr4 140325435 140326415 -43962247 + L1ME1 LINE L1 5097 6148 -18 21 0 0 0 chr4 140326635 140326656 -43962006 + AT_rich Low_complexity Low_complexity 1 21 0 1429 206 17 20 chr4 140326669 140326970 -43961692 - MLT1A1 LTR MaLR -11 354 55 312 111 0 0 chr4 140326994 140327039 -43961623 - MLT1A1 LTR MaLR -266 99 55 1086 170 0 64 chr4 140327072 140327290 -43961372 - MLT1A1 LTR MaLR -161 204 1 296 233 0 0 chr4 140327530 140327590 -43961072 - MLT1K LTR MaLR -2 586 527 229 200 0 0 chr4 140327785 140327835 -43960827 - L1M3 LINE L1 -337 5831 5782 192 40 0 0 chr4 140327848 140327873 -43960789 + (CA)n Simple_repeat Simple_repeat 2 26 0 1127 252 50 27 chr4 140328370 140328828 -43959834 - L1ME3A LINE L1 -5 6165 5683 2493 82 0 0 chr4 140328831 140329134 -43959528 - AluSq SINE Alu -10 303 1 5969 200 40 25 chr4 140329135 140329870 -43958792 - L1PBa LINE L1 -4133 2730 2007 1791 137 22 26 chr4 140329870 140330183 -43958479 + AluSx SINE Alu 1 312 0 5969 200 40 25 chr4 140330183 140332862 -43955800 - L1PBa LINE L1 -4856 2007 207 1483 313 93 29 chr4 140334258 140334995 -43953667 + L2 LINE L2 2219 3000 -313 218 304 0 0 chr4 140335128 140335174 -43953488 + L2 LINE L2 3172 3217 -55 447 19 0 0 chr4 140335701 140335753 -43952909 + (TG)n Simple_repeat Simple_repeat 2 53 0 336 302 117 5 chr4 140335940 140336206 -43952456 - L1M3 LINE L1 -378 5743 5452 659 270 95 40 chr4 140336210 140336713 -43951949 - L1M3 LINE L1 -878 5268 4738 21 36 0 0 chr4 140336938 140336966 -43951696 + AT_rich Low_complexity Low_complexity 1 28 0 1164 292 110 3 chr4 140337120 140337510 -43951152 + LTR16A LTR ERVL 19 450 0 1245 272 48 39 chr4 140337510 140338025 -43950637 + HERV16 LTR ERVL 1 520 -4476 205 328 0 0 chr4 140340706 140340773 -43947889 + T-rich Low_complexity Low_complexity 2 68 0 326 333 44 35 chr4 140340808 140340922 -43947740 - L2 LINE L2 -9 3263 3149 21 0 0 0 chr4 140342258 140342279 -43946383 + AT_rich Low_complexity Low_complexity 1 21 0 322 261 17 59 chr4 140343037 140343156 -43945506 - MER103 DNA DNA -14 152 39 3960 61 0 13 chr4 140344813 140345336 -43943326 - L1PA4 LINE L1 0 6155 5640 216 247 0 59 chr4 140345375 140345460 -43943202 + (CACCC)n Simple_repeat Simple_repeat 2 81 0 381 22 0 0 chr4 140345593 140345638 -43943024 - L1P2 LINE L1 -474 5681 5637 405 322 47 29 chr4 140348980 140349151 -43939511 - MER5B DNA MER1_type -1 177 4 22 35 0 0 chr4 140349359 140349388 -43939274 + AT_rich Low_complexity Low_complexity 1 29 0 216 242 48 0 chr4 140349408 140349470 -43939192 + (CATA)n Simple_repeat Simple_repeat 4 68 0 420 323 13 13 chr4 140349866 140350021 -43938641 - MIR3 SINE MIR -31 177 23 204 386 100 17 chr4 140350291 140350532 -43938130 + L2 LINE L2 2946 3206 -66 21 57 0 0 chr4 140350761 140350796 -43937866 + AT_rich Low_complexity Low_complexity 1 35 0 211 254 0 0 chr4 140352117 140352172 -43936490 + GA-rich Low_complexity Low_complexity 2 56 0 1895 315 67 40 chr4 140353144 140354984 -43933678 + ERVL LTR ERVL 101 2075 -2921 1060 259 101 49 chr4 140354991 140355684 -43932978 + ERVL LTR ERVL 2199 2977 -2019 1033 337 51 39 chr4 140356056 140356466 -43932196 + ERVL LTR ERVL 4362 4766 -998 1827 188 88 9 chr4 140356466 140356897 -43931765 + MLT1C LTR MaLR 1 465 -2 1033 337 51 39 chr4 140356897 140357395 -43931267 + ERVL LTR ERVL 4766 5281 -483 2116 136 0 0 chr4 140357940 140358242 -43930420 - AluSx SINE Alu -10 302 1 217 226 183 21 chr4 140358505 140358598 -43930064 - MIR SINE MIR 0 262 155 1968 125 28 3 chr4 140359294 140359582 -43929080 + AluSx SINE Alu 1 295 -17 268 309 91 9 chr4 140360108 140360218 -43928444 + MIR SINE MIR 112 230 -32 493 144 272 0 chr4 140360523 140360538 -43928124 - L1MA10 LINE L1 -1 6333 6319 2054 216 147 33 chr4 140360538 140361177 -43927485 - L1ME1 LINE L1 -7 6228 5517 1952 221 22 67 chr4 140361170 140361891 -43926771 - L1ME1 LINE L1 -3674 2541 1886 * 863 298 8 30 chr4 140361919 140362184 -43926478 - L1ME1 LINE L1 -6090 306 48 453 146 68 0 chr4 140363034 140363137 -43925525 + L1MA9 LINE L1 6198 6307 -5 1580 214 82 51 chr4 140363155 140363280 -43925382 + MLT1D LTR MaLR 1 121 -384 2636 83 11 0 chr4 140363280 140363628 -43925034 + THE1A LTR MaLR 1 352 -3 1580 214 82 51 chr4 140363628 140363992 -43924670 + MLT1D LTR MaLR 121 505 0 907 193 0 2 chr4 140366355 140366583 -43922079 + AluJb SINE Alu 11 283 -29 621 325 47 20 chr4 140367292 140367590 -43921072 + L2 LINE L2 1818 2123 -1191 4178 229 18 34 chr4 140367671 140367979 -43920683 - L1 LINE L1 -2549 3597 3286 438 202 0 0 chr4 140367979 140368063 -43920599 - AluJ/FLAM SINE Alu -228 84 1 4178 229 18 34 chr4 140368063 140369116 -43919546 - L1 LINE L1 -2860 3286 2249 1393 76 0 0 chr4 140369116 140369288 -43919374 + AluY SINE Alu 1 172 -139 1713 203 53 3 chr4 140369649 140369989 -43918673 + MLT1A1 LTR MaLR 1 357 -8 27 49 0 0 chr4 140370503 140370544 -43918118 + AT_rich Low_complexity Low_complexity 1 41 0 224 98 0 24 chr4 140370886 140370927 -43917735 + (TA)n Simple_repeat Simple_repeat 1 40 0 196 328 17 34 chr4 140372169 140372288 -43916374 + L2 LINE L2 2671 2787 -527 21 0 0 0 chr4 140372564 140372585 -43916077 + AT_rich Low_complexity Low_complexity 1 21 0 2146 130 3 0 chr4 140373967 140374268 -43914394 + AluSq SINE Alu 1 302 -11 2077 229 40 54 chr4 140374414 140374505 -43914157 + MLT1E2 LTR MaLR 4 95 -531 2346 188 36 46 chr4 140374505 140375065 -43913597 - MLT2B3 LTR ERVL 0 554 1 2077 229 40 54 chr4 140375065 140375605 -43913057 + MLT1E2 LTR MaLR 95 626 0 293 235 15 0 chr4 140375698 140375766 -43912896 - LTR33A LTR ERVL -2 521 453 250 289 36 24 chr4 140375988 140376071 -43912591 - MLT2E LTR ERVL -480 148 65 212 167 0 0 chr4 140376186 140376222 -43912440 + A-rich Low_complexity Low_complexity 4 39 0 207 315 128 27 chr4 140376364 140376513 -43912149 - MIR3 SINE MIR -5 203 40 1021 252 29 39 chr4 140376537 140376985 -43911677 - LTR40c LTR ERVL 0 519 37 402 299 75 25 chr4 140377141 140377382 -43911280 - L1ME2 LINE L1 -298 5866 5614 335 205 14 40 chr4 140377371 140377520 -43911142 - L1ME2 LINE L1 -762 5384 5264 * 438 173 0 0 chr4 140377611 140377686 -43910976 + FLAM_A SINE Alu 58 132 -10 413 280 43 5 chr4 140377697 140377883 -43910779 + L1M4 LINE L1 4025 4217 -1929 531 293 19 29 chr4 140377978 140378183 -43910479 - L1MEd LINE L1 -5390 729 527 445 250 37 43 chr4 140378538 140378702 -43909960 + MLT1J LTR MaLR 1 163 -348 401 261 0 0 chr4 140380078 140380166 -43908496 - MIR SINE MIR -21 241 154 373 332 20 100 chr4 140380288 140380538 -43908124 - L1MEd LINE L1 -5615 504 275 1598 148 185 43 chr4 140380541 140380751 -43907911 - MSTA LTR MaLR 0 428 249 2162 125 0 3 chr4 140380751 140381047 -43907615 - AluSx SINE Alu -17 295 1 1598 148 185 43 chr4 140381047 140381209 -43907453 - MSTA LTR MaLR -179 249 3 4281 128 95 130 chr4 140381209 140382790 -43905872 + pTR5 LTR ERV1 743 2438 0 242 310 63 44 chr4 140383128 140383286 -43905376 - L2 LINE L2 -808 2506 2346 1359 172 38 0 chr4 140383656 140383917 -43904745 + AluSx SINE Alu 28 298 -14 251 352 39 23 chr4 140383993 140384121 -43904541 - L3 LINE CR1 -6 1571 1442 294 293 156 18 chr4 140384160 140384327 -43904335 - L3 LINE CR1 -301 1276 1087 249 366 46 41 chr4 140384463 140384657 -43904005 + L2 LINE L2 2954 3148 -124 322 359 8 0 chr4 140385034 140385151 -43903511 + L2 LINE L2 3192 3309 -4 328 262 14 110 chr4 140385562 140385707 -43902955 - MIR SINE MIR -60 148 18 271 134 0 60 chr4 140387023 140387090 -43901572 + LTR22 LTR ERVK 1 63 -517 21825 150 32 14 chr4 140387266 140394762 -43893900 + L1MA3 LINE L1 23 7669 -55 2214 112 0 0 chr4 140394762 140395058 -43893604 + AluSx SINE Alu 1 296 -16 21825 150 32 14 chr4 140395058 140395088 -43893574 + L1MA3 LINE L1 7669 7697 -27 584 222 0 6 chr4 140395090 140395261 -43893401 + (TA)n Simple_repeat Simple_repeat 2 171 0 21 57 0 0 chr4 140395265 140395300 -43893362 + AT_rich Low_complexity Low_complexity 1 35 0 701 151 132 49 chr4 140395857 140396062 -43892600 - MER31A LTR ERV1 0 485 264 362 165 0 155 chr4 140396062 140396165 -43892497 - MER31B LTR ERV1 -379 87 1 240 325 154 18 chr4 140396325 140396494 -43892168 + L2 LINE L2 2561 2752 -562 345 376 28 35 chr4 140396647 140396902 -43891760 + L2 LINE L2 2804 3056 -216 1347 72 0 0 chr4 140397659 140397826 -43890836 - AluY SINE Alu -13 298 132 842 263 88 35 chr4 140397909 140398399 -43890263 - L1MC5 LINE L1 -430 7531 7016 9062 27 0 20 chr4 140398418 140400308 -43888354 - L1PA3 LINE L1 -3 6152 4286 9856 33 4 0 chr4 140400308 140401566 -43887096 + L1PA3 LINE L1 3012 4274 -1872 1025 206 42 94 chr4 140401565 140401968 -43886694 - L1MC5 LINE L1 -930 7031 6650 * 372 314 148 5 chr4 140402665 140402888 -43885774 - MIR SINE MIR -2 260 6 695 161 0 0 chr4 140403190 140403308 -43885354 + L1PA16 LINE L1 6046 6163 -3 468 329 182 24 chr4 140403677 140404215 -43884447 + L2 LINE L2 1324 1946 -1368 236 257 28 46 chr4 140404215 140404324 -43884338 - MLT1J2 LTR MaLR 0 450 344 449 294 32 13 chr4 140404366 140404668 -43883994 - MLT1G3 LTR MaLR 0 595 186 268 268 36 45 chr4 140404771 140404883 -43883779 + L2 LINE L2 1936 2046 -1268 438 333 159 30 chr4 140404943 140405376 -43883286 + L2 LINE L2 2825 3313 0 342 0 0 0 chr4 140405481 140405519 -43883143 + (TG)n Simple_repeat Simple_repeat 1 38 0 1546 173 77 9 chr4 140406202 140406538 -43882124 - MLT1F LTR MaLR -7 535 177 2118 178 106 11 chr4 140406806 140407267 -43881395 + MLT1D LTR MaLR 1 505 0 2981 176 19 19 chr4 140407508 140408088 -43880574 - LTR22 LTR ERVK 0 580 1 695 319 93 24 chr4 140408249 140408700 -43879962 + MLT1K LTR MaLR 85 566 -22 2550 230 29 20 chr4 140408845 140409492 -43879170 - MER82 DNA MER2_type 0 653 1 841 340 91 20 chr4 140409931 140410381 -43878281 - L3 LINE CR1 -17 1560 1079 21 0 0 0 chr4 140410630 140410651 -43878011 + AT_rich Low_complexity Low_complexity 1 21 0 10008 178 91 14 chr4 140411244 140414967 -43873695 - L1MA4A LINE L1 -5 7000 2699 1841 158 4 0 chr4 140414967 140415298 -43873364 + AluSg SINE Alu 3 334 0 10008 178 91 14 chr4 140415298 140417036 -43871626 - L1MA4A LINE L1 -4306 2699 1095 307 288 0 0 chr4 140417444 140417524 -43871138 + MLT1I LTR MaLR 64 143 -266 227 239 0 45 chr4 140417709 140417797 -43870865 + MLT1I LTR MaLR 324 407 -2 2480 52 7 3 chr4 140418168 140418474 -43870188 + AluY SINE Alu 1 307 -4 264 324 0 0 chr4 140420144 140420212 -43868450 - MIR3 SINE MIR -28 180 113 963 298 73 24 chr4 140420462 140421084 -43867578 - L2 LINE L2 0 3313 2665 22 35 0 0 chr4 140421386 140421415 -43867247 + AT_rich Low_complexity Low_complexity 1 29 0 231 284 58 19 chr4 140421624 140421779 -43866883 - L1ME LINE L1 -225 5896 5736 382 295 50 55 chr4 140421780 140421980 -43866682 - L1ME LINE L1 -433 5688 5490 296 237 175 0 chr4 140422218 140422315 -43866347 + L2 LINE L2 3182 3295 -18 25 31 0 0 chr4 140422336 140422368 -43866294 + AT_rich Low_complexity Low_complexity 1 32 0 255 61 0 0 chr4 140422504 140422537 -43866125 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 684 115 0 10 chr4 140422974 140423078 -43865584 - U13 snRNA snRNA -1 103 1 1916 169 0 6 chr4 140423365 140423678 -43864984 - AluSx SINE Alu -1 311 1 22 0 0 0 chr4 140424519 140424541 -43864121 + AT_rich Low_complexity Low_complexity 1 22 0 269 331 92 0 chr4 140424664 140424785 -43863877 - MIR SINE MIR -62 146 37 667 132 279 7 chr4 140424886 140425022 -43863640 - MER5A DNA MER1_type 0 189 17 2156 88 25 0 chr4 140425635 140425920 -43862742 + AluY SINE Alu 1 292 -19 1893 173 0 10 chr4 140427184 140427479 -43861183 - AluJb SINE Alu -17 295 4 1826 147 44 3 chr4 140427755 140428048 -43860614 - AluSx SINE Alu -7 305 1 265 255 43 11 chr4 140428495 140428589 -43860073 - MER69 DNA AcHobo -49 2477 2381 357 263 9 18 chr4 140429004 140429118 -43859544 - MSTC LTR MaLR -68 297 185 2122 123 16 7 chr4 140429204 140429514 -43859148 - AluSq SINE Alu 0 313 1 652 164 52 13 chr4 140429516 140429666 -43858996 - MSTC LTR MaLR -206 159 1 929 292 226 3 chr4 140429957 140430561 -43858101 - L2 LINE L2 0 3313 2540 379 286 50 66 chr4 140430656 140430838 -43857824 + MER5A DNA MER1_type 2 180 -9 421 335 58 71 chr4 140431548 140431617 -43857045 - L1ME4a LINE L1 -224 5897 5829 1857 172 3 0 chr4 140431617 140431913 -43856749 - AluJb SINE Alu -15 297 1 421 335 58 71 chr4 140431913 140432294 -43856368 - L1ME4a LINE L1 -292 5829 5453 540 274 71 14 chr4 140433287 140433611 -43855051 - L1MC4a LINE L1 -313 5808 5560 1601 58 5 0 chr4 140433627 140433833 -43854829 - L1PA5 LINE L1 0 6154 5948 689 281 12 6 chr4 140435299 140435463 -43853199 + MER5B DNA MER1_type 7 171 -7 21 36 0 0 chr4 140435513 140435541 -43853121 + AT_rich Low_complexity Low_complexity 1 28 0 1575 204 80 3 chr4 140435852 140436287 -43852375 - MLT2B1 LTR ERVL 0 515 1 296 256 150 23 chr4 140436475 140436608 -43852054 + MER5A DNA MER1_type 16 165 -24 537 157 11 0 chr4 140436990 140437079 -43851583 - FLAM_C SINE Alu -19 124 35 430 312 90 5 chr4 140437205 140437394 -43851268 + MIR SINE MIR 2 206 -56 317 216 171 0 chr4 140437705 140437793 -43850869 - MER94 DNA DNA -31 103 1 2152 278 90 60 chr4 140438436 140439409 -43849253 + L2 LINE L2 2132 3163 -150 258 192 0 0 chr4 140439413 140439465 -43849197 + (CA)n Simple_repeat Simple_repeat 2 53 0 364 238 33 105 chr4 140439465 140439646 -43849016 + L2 LINE L2 3146 3313 0 1273 202 62 28 chr4 140440222 140440544 -43848118 - MER58B DNA MER1_type -4 337 5 189 285 109 20 chr4 140441204 140441378 -43847284 - MIR SINE MIR -10 252 32 279 302 60 26 chr4 140443458 140443574 -43845088 + MIR SINE MIR 32 151 -57 27 29 0 0 chr4 140443719 140443753 -43844909 + AT_rich Low_complexity Low_complexity 1 34 0 180 333 0 14 chr4 140444796 140444868 -43843794 - MIR3 SINE MIR -5 203 133 794 284 111 26 chr4 140445051 140445439 -43843223 + LTR33 LTR ERVL 93 513 -8 682 248 0 64 chr4 140446418 140446532 -43842130 - MIR SINE MIR -7 255 135 2096 142 14 8 chr4 140446532 140446885 -43841777 - THE1A LTR MaLR 0 355 1 1854 180 110 19 chr4 140446890 140447318 -43841344 - MLT1C LTR MaLR 0 467 1 682 248 0 64 chr4 140447318 140447399 -43841263 - MIR SINE MIR -131 131 67 1851 180 0 3 chr4 140447828 140448117 -43840545 + AluJb SINE Alu 1 288 -24 238 323 0 0 chr4 140448882 140448944 -43839718 + L3 LINE CR1 1512 1573 -4 * 272 333 10 0 chr4 140448942 140449038 -43839624 - MIR SINE MIR -64 144 48 21 57 0 0 chr4 140450700 140450735 -43837927 + AT_rich Low_complexity Low_complexity 1 35 0 237 267 0 44 chr4 140451121 140451211 -43837451 - MLT1C LTR MaLR -118 431 346 232 306 0 0 chr4 140451488 140451560 -43837102 - L1MC/D LINE L1 -2215 5593 5522 687 249 85 48 chr4 140451711 140452065 -43836597 - HAL1b LINE L1 -567 781 415 396 248 71 61 chr4 140452086 140452163 -43836499 - L2 LINE L2 -1 3312 3237 339 96 0 0 chr4 140452163 140452215 -43836447 + (CA)n Simple_repeat Simple_repeat 1 52 0 396 248 71 61 chr4 140452215 140452335 -43836327 - L2 LINE L2 -76 3237 3113 493 252 68 118 chr4 140452339 140452704 -43835958 - MLT1C LTR MaLR -38 429 6 182 176 165 77 chr4 140453669 140453760 -43834902 - MER5A DNA MER1_type -49 140 42 21 0 0 0 chr4 140455579 140455600 -43833062 + AT_rich Low_complexity Low_complexity 1 21 0 365 288 51 40 chr4 140455698 140455814 -43832848 - MIR SINE MIR 0 262 142 484 104 13 0 chr4 140455814 140455891 -43832771 - MER116 DNA Mariner -2 78 1 365 288 51 40 chr4 140455891 140455951 -43832711 - MIR SINE MIR -120 142 84 204 319 69 56 chr4 140456009 140456153 -43832509 + MIR SINE MIR 63 208 -54 224 284 108 0 chr4 140456801 140456875 -43831787 - L2 LINE L2 -36 3236 3155 4252 113 232 132 chr4 140457413 140458955 -43829707 - pTR5 LTR ERV1 0 2438 743 941 169 5 5 chr4 140460079 140460268 -43828394 + MER53 DNA DNA 1 189 0 5309 118 21 3 chr4 140460371 140461232 -43827430 + LOR1a-int LTR ERV1 419 1294 -6826 16453 99 29 34 chr4 140461333 140464194 -43824468 + LOR1a-int LTR ERV1 1502 4348 -3772 842 100 7 43 chr4 140464193 140464333 -43824329 + LOR1a-int LTR ERV1 5930 6064 -2056 * 415 160 11 43 chr4 140464332 140464426 -43824236 + LOR1a-int LTR ERV1 8030 8120 0 * 3072 121 37 16 chr4 140464426 140464913 -43823749 + LOR1a LTR ERV1 1 497 0 205 300 0 0 chr4 140465029 140465079 -43823583 + MER5B DNA MER1_type 5 54 -124 284 244 178 0 chr4 140465236 140465326 -43823336 - MER5B DNA MER1_type -72 106 1 322 317 24 16 chr4 140466305 140466428 -43822234 + MER5C DNA MER1_type 1 124 -200 275 291 70 0 chr4 140466454 140466540 -43822122 + MER5C DNA MER1_type 233 324 0 4375 187 19 1 chr4 140466922 140467897 -43820765 + L1MB2 LINE L1 5176 6171 0 783 230 102 13 chr4 140467930 140468156 -43820506 + AluJb SINE Alu 62 307 -5 411 133 10 31 chr4 140468156 140468254 -43820408 + GA-rich Low_complexity Low_complexity 1 96 0 31 76 0 0 chr4 140469676 140469742 -43818920 + AT_rich Low_complexity Low_complexity 1 66 0 680 186 116 14 chr4 140470001 140470206 -43818456 + MLT1B LTR MaLR 1 214 -160 1132 255 92 29 chr4 140472024 140472719 -43815943 + HAL1 LINE L1 743 1481 -1026 1048 286 44 10 chr4 140472726 140473110 -43815552 + HAL1 LINE L1 1532 1928 -579 806 266 62 33 chr4 140473310 140473615 -43815047 + MLT1J2 LTR MaLR 4 317 -133 1429 230 72 66 chr4 140474874 140475405 -43813257 - MER21B LTR ERV1 -60 803 270 619 274 30 0 chr4 140475432 140475596 -43813066 - MER21B LTR ERV1 -682 181 13 2028 91 29 7 chr4 140476426 140476735 -43811927 - AluSx SINE Alu 0 315 1 222 266 172 39 chr4 140476791 140476919 -43811743 + L2 LINE L2 3169 3313 0 276 265 83 68 chr4 140477006 140477138 -43811524 + L2 LINE L2 3138 3271 -1 207 139 0 0 chr4 140479417 140479453 -43809209 + (CA)n Simple_repeat Simple_repeat 2 37 0 5818 117 114 39 chr4 140479888 140480286 -43808376 - Tigger3b DNA MER2_type -1800 1228 861 2190 102 3 3 chr4 140480286 140480580 -43808082 - AluSx SINE Alu -18 294 1 5818 117 114 39 chr4 140480580 140481324 -43807338 - Tigger3b DNA MER2_type -2167 861 1 1083 248 94 78 chr4 140481364 140481904 -43806758 - MLT1H LTR MaLR 0 549 1 260 219 73 49 chr4 140483159 140483241 -43805421 - MIR3 SINE MIR -49 159 76 2000 116 11 0 chr4 140483492 140483934 -43804728 - AluSc SINE Alu 0 445 1 232 261 0 29 chr4 140484673 140484742 -43803920 - L1MC5 LINE L1 -576 7385 7319 5292 115 144 13 chr4 140484782 140485772 -43802890 - L1P LINE L1 -2008 4138 3019 6478 65 6 12 chr4 140485772 140487269 -43801393 + L1PA8A LINE L1 4639 6130 -1 305 211 200 0 chr4 140487337 140487432 -43801230 + MER58A DNA MER1_type 1 114 0 38941 69 5 3 chr4 140487532 140491269 -43797393 - L1P2 LINE L1 -561 5593 1843 2685 42 0 0 chr4 140491269 140491577 -43797085 + AluY SINE Alu 1 308 -3 38941 69 5 3 chr4 140491577 140493423 -43795239 - L1P2 LINE L1 -4311 1843 1 287 150 117 0 chr4 140493428 140493488 -43795174 + MER97c DNA MER1_type? 112 178 -912 826 343 58 22 chr4 140494244 140494661 -43794001 + LTR16C LTR ERVL 1 432 -59 516 252 13 20 chr4 140494762 140494913 -43793749 + MIR SINE MIR 81 230 -32 22 0 0 0 chr4 140494924 140494946 -43793716 + AT_rich Low_complexity Low_complexity 1 22 0 5195 113 13 0 chr4 140496236 140496533 -43792129 - L1PA16 LINE L1 -18 6148 5856 2241 112 0 3 chr4 140496533 140496827 -43791835 - AluSg SINE Alu -11 299 7 5195 113 13 0 chr4 140496827 140497567 -43791095 - L1PA16 LINE L1 -310 5856 5089 3802 203 15 14 chr4 140497617 140498567 -43790095 - L1 LINE L1 -1059 5087 4137 * 4827 228 43 16 chr4 140498565 140500520 -43788142 - L1PBb LINE L1 -3310 3539 1428 1013 231 3 59 chr4 140500889 140501196 -43787466 - L1PBb LINE L1 -6116 733 444 325 371 29 0 chr4 140501217 140501322 -43787340 - L1M2 LINE L1 -6063 786 679 41897 41 2 2 chr4 140502346 140508490 -43780172 + L1PA3 LINE L1 12 6152 -3 601 188 24 111 chr4 140508829 140508949 -43779713 + MER20 DNA MER1_type 26 122 -97 2073 114 0 10 chr4 140508949 140509246 -43779416 + AluSp SINE Alu 1 294 -19 601 188 24 111 chr4 140509246 140509333 -43779329 + MER20 DNA MER1_type 122 215 -4 2084 171 83 21 chr4 140509525 140509958 -43778704 + MLT1C LTR MaLR 1 460 -7 25 0 0 0 chr4 140510057 140510082 -43778580 + AT_rich Low_complexity Low_complexity 1 25 0 181 277 0 0 chr4 140510944 140510991 -43777671 + MIR SINE MIR 92 138 -124 2306 48 0 61 chr4 140511107 140511418 -43777244 - AluY SINE Alu -15 296 5 727 150 0 9 chr4 140511664 140511777 -43776885 - AluJb SINE Alu -200 112 1 201 336 160 0 chr4 140512705 140512836 -43775826 + MIR SINE MIR 95 246 -16 248 111 0 0 chr4 140512868 140512913 -43775749 - Alu SINE Alu -2 298 254 1688 254 85 58 chr4 140513101 140513727 -43774935 + L1ME LINE L1 3 659 -5411 206 32 32 0 chr4 140513727 140513758 -43774904 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1688 254 85 58 chr4 140513758 140513979 -43774683 + L1ME LINE L1 659 873 -5197 1272 237 60 33 chr4 140514211 140514641 -43774021 - MLT1D LTR MaLR -43 462 21 4328 170 111 81 chr4 140514770 140515353 -43773309 - L1MC3 LINE L1 0 7785 7221 283 175 12 50 chr4 140515353 140515433 -43773229 - MLT1F1 LTR MaLR -456 111 35 4328 170 111 81 chr4 140515433 140516073 -43772589 - L1MC3 LINE L1 -564 7221 6443 601 337 90 32 chr4 140516123 140516589 -43772073 + MLT1K LTR MaLR 79 571 -17 1798 149 0 46 chr4 140517328 140517630 -43771032 - AluSx SINE Alu -19 293 6 1907 153 17 3 chr4 140519227 140519555 -43769107 - AluSx SINE Alu 0 312 2 3158 159 37 0 chr4 140520268 140520776 -43767886 - MER1A DNA MER1_type 0 527 1 193 221 44 44 chr4 140521727 140521795 -43766867 - MER5C DNA MER1_type -1 323 256 433 203 8 78 chr4 140521888 140521947 -43766715 - MER5C DNA MER1_type -205 119 72 2406 91 0 0 chr4 140521947 140522244 -43766418 - AluSg SINE Alu -13 297 1 433 203 8 78 chr4 140522244 140522312 -43766350 - MER5C DNA MER1_type -252 72 1 27 49 0 0 chr4 140522716 140522757 -43765905 + AT_rich Low_complexity Low_complexity 1 41 0 6775 39 47 2 chr4 140523050 140524465 -43764197 - L1PA5 LINE L1 -3 6151 4740 8035 44 0 0 chr4 140524465 140525486 -43763176 + L1PA5 LINE L1 3717 4737 -1409 1018 303 31 9 chr4 140525922 140526272 -43762390 + LTR16B LTR ERVL 107 464 0 227 270 34 56 chr4 140527418 140527507 -43761155 + MIR SINE MIR 50 136 -126 253 295 220 12 chr4 140528149 140528322 -43760340 - MIR SINE MIR -8 254 46 1891 96 126 0 chr4 140530264 140530534 -43758128 - AluSx SINE Alu -8 304 1 982 183 41 41 chr4 140530790 140531009 -43757653 + MER20 DNA MER1_type 1 219 0 934 222 5 5 chr4 140532817 140533020 -43755642 - MER3 DNA MER1_type -6 203 1 1539 234 86 23 chr4 140533166 140533597 -43755065 + MLT2B2 LTR ERVL 1 458 -57 417 141 0 0 chr4 140533597 140533668 -43754994 + (TC)n Simple_repeat Simple_repeat 1 71 0 282 95 0 0 chr4 140533673 140533715 -43754947 + (TG)n Simple_repeat Simple_repeat 2 43 0 307 100 10 0 chr4 140533752 140533796 -43754866 + MLT2C1 LTR ERVL 350 554 0 263 27 0 27 chr4 140533958 140533995 -43754667 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr4 140534949 140534970 -43753692 + AT_rich Low_complexity Low_complexity 1 21 0 224 294 24 24 chr4 140535067 140535152 -43753510 + L2 LINE L2 3188 3272 0 235 242 0 65 chr4 140535726 140535788 -43752874 + MER20 DNA MER1_type 11 68 -151 1579 246 97 15 chr4 140535789 140536958 -43751704 - L1MC4 LINE L1 -152 7890 6470 22 0 0 0 chr4 140538400 140538422 -43750240 + AT_rich Low_complexity Low_complexity 1 22 0 443 302 68 42 chr4 140539297 140539489 -43749173 - MIR SINE MIR -18 244 48 787 237 138 93 chr4 140539621 140540093 -43748569 - MLT1H LTR MaLR -3 546 54 21 57 0 0 chr4 140541160 140541195 -43747467 + AT_rich Low_complexity Low_complexity 1 35 0 265 268 0 0 chr4 140541513 140541569 -43747093 - ERVL-F LTR ERVL -1543 4221 4166 1284 91 91 41 chr4 140541576 140541795 -43746867 + MER30 DNA MER1_type 1 230 0 1992 177 76 5 chr4 140541796 140542192 -43746470 + MSTB1 LTR MaLR 9 432 0 750 313 4 9 chr4 140542194 140542421 -43746241 - ERVL-F LTR ERVL -1517 4137 3912 11006 150 32 9 chr4 140542435 140545667 -43742995 - L1MA1 LINE L1 0 7721 3539 7820 107 72 45 chr4 140545678 140546316 -43742346 - L1MA1 LINE L1 -3959 3606 2986 250 51 0 0 chr4 140546316 140546355 -43742307 - AluSp/q SINE Alu -5 298 260 7820 107 72 45 chr4 140546355 140547147 -43741515 - L1MA1 LINE L1 -4579 2986 2099 462 168 0 32 chr4 140547147 140547242 -43741420 - ERVL-F LTR ERVL -1792 3972 3881 1998 248 75 28 chr4 140547274 140547850 -43740812 - ERVL-F LTR ERVL -1960 3804 3202 1139 136 38 61 chr4 140547850 140548063 -43740599 + MER75 DNA T2_type 1 208 -306 4287 53 13 0 chr4 140548120 140548665 -43739997 - L1PA7 LINE L1 -2 6152 5601 2118 106 10 3 chr4 140548665 140548966 -43739696 + MER75 DNA T2_type 206 508 -6 2572 226 20 4 chr4 140548968 140549716 -43738946 - ERVL-F LTR ERVL -2561 3203 2404 1323 327 34 50 chr4 140549711 140550351 -43738311 - ERVL-F LTR ERVL -4627 1137 508 * 433 219 28 86 chr4 140550678 140550863 -43737799 - ERVL-F LTR ERVL -5492 162 4 721 58 19 0 chr4 140550901 140551004 -43737658 + (TCTA)n Simple_repeat Simple_repeat 1 105 0 1564 247 40 21 chr4 140551034 140551410 -43737252 - MLT2F LTR ERVL -72 591 209 337 120 0 0 chr4 140551447 140551497 -43737165 + MLT2B2 LTR ERVL 1 50 -465 2136 178 36 80 chr4 140551516 140551989 -43736673 + MLT2B2 LTR ERVL 23 474 -41 1931 153 37 6 chr4 140551999 140552326 -43736336 + MER7A DNA MER2_type 1 335 -11 660 236 38 6 chr4 140552357 140552514 -43736148 - MLT2F LTR ERVL -501 162 1 483 231 15 8 chr4 140552524 140552654 -43736008 + L1M4 LINE L1 3877 4007 -2139 554 257 0 34 chr4 140552660 140552835 -43735827 + L1M4 LINE L1 4076 4244 -1902 721 186 0 0 chr4 140553336 140553454 -43735208 - FLAM_C SINE Alu -25 118 1 322 51 0 0 chr4 140553994 140554033 -43734629 + Tigger3(Golem) DNA MER2_type 2822 2860 -169 2976 175 74 3 chr4 140554130 140554343 -43734319 + MER6A DNA MER2_type 1 197 -668 327 113 0 0 chr4 140554343 140554396 -43734266 + (TG)n Simple_repeat Simple_repeat 1 53 0 2976 175 74 3 chr4 140554396 140554747 -43733915 + MER6A DNA MER2_type 197 605 0 284 316 41 0 chr4 140555209 140555307 -43733355 - MIR SINE MIR -1 261 160 272 336 78 23 chr4 140555404 140555532 -43733130 + LTR67 LTR ERVL 105 239 -318 22 35 0 0 chr4 140556573 140556602 -43732060 + AT_rich Low_complexity Low_complexity 1 29 0 286 318 122 94 chr4 140557300 140557613 -43731049 + L2 LINE L2 1142 1445 -1869 2561 47 3 0 chr4 140557613 140557914 -43730748 + AluY SINE Alu 2 303 -8 286 318 122 94 chr4 140557914 140558240 -43730422 + L2 LINE L2 1445 1760 -1554 1506 79 4 26 chr4 140558240 140558467 -43730195 - L1PA5 LINE L1 -5 6149 5928 286 318 122 94 chr4 140558467 140559495 -43729167 + L2 LINE L2 1760 2857 -457 209 367 33 17 chr4 140559573 140559693 -43728969 + L2 LINE L2 2933 3054 -218 2299 240 62 46 chr4 140560653 140562207 -43726455 - L1ME LINE L1 -3021 3519 1940 962 282 12 30 chr4 140562190 140562681 -43725981 - L1ME LINE L1 -5053 1477 1023 * 2387 150 36 2 chr4 140562681 140563095 -43725567 + MSTA LTR MaLR 1 428 0 962 282 12 30 chr4 140563095 140563196 -43725466 - L1ME LINE L1 -5507 1023 922 344 340 153 13 chr4 140563321 140563556 -43725106 - L1ME LINE L1 -5573 957 690 1876 144 10 26 chr4 140565196 140565502 -43723160 - AluSx SINE Alu -11 301 1 1058 294 40 35 chr4 140566460 140566888 -43721774 - LTR16B LTR ERVL -14 450 21 1633 191 0 0 chr4 140567105 140567383 -43721279 - AluSx SINE Alu -32 280 3 195 162 0 0 chr4 140567451 140567488 -43721174 + (TCTA)n Simple_repeat Simple_repeat 1 37 0 27 49 0 0 chr4 140567549 140567590 -43721072 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr4 140569140 140569165 -43719497 + AT_rich Low_complexity Low_complexity 1 25 0 562 304 70 13 chr4 140569574 140569804 -43718858 - MIR SINE MIR -11 251 9 25 0 0 0 chr4 140569804 140569829 -43718833 + AT_rich Low_complexity Low_complexity 1 25 0 568 276 99 16 chr4 140570621 140570811 -43717851 + MIR SINE MIR 51 262 0 904 150 0 0 chr4 140571806 140571939 -43716723 + AluSq/x SINE Alu 1 133 -180 564 78 70 0 chr4 140571939 140572054 -43716608 + GA-rich Low_complexity Low_complexity 3 125 0 666 188 65 59 chr4 140572055 140572206 -43716456 + AluJb SINE Alu 131 285 -27 672 77 0 0 chr4 140572206 140572297 -43716365 + (TAGA)n Simple_repeat Simple_repeat 4 94 0 666 188 65 59 chr4 140572297 140572315 -43716347 + AluJb SINE Alu 285 301 -11 891 285 120 25 chr4 140572317 140572966 -43715696 + L2 LINE L2 2548 3309 -4 274 276 189 31 chr4 140573140 140573368 -43715294 + L1MC/D LINE L1 5566 5829 -1979 186 231 0 0 chr4 140573369 140573434 -43715228 + (TA)n Simple_repeat Simple_repeat 1 65 0 253 212 0 45 chr4 140573538 140573604 -43715058 + T-rich Low_complexity Low_complexity 2 64 0 21 36 0 0 chr4 140573650 140573678 -43714984 + AT_rich Low_complexity Low_complexity 1 28 0 408 246 172 60 chr4 140574095 140574310 -43714352 - L2 LINE L2 0 3313 3075 533 293 100 26 chr4 140574360 140574589 -43714073 - MLT1J LTR MaLR -261 250 5 199 75 0 50 chr4 140574606 140574646 -43714016 + (GGAAA)n Simple_repeat Simple_repeat 3 40 0 61 27 0 0 chr4 140574662 140574737 -43713925 + AT_rich Low_complexity Low_complexity 1 75 0 33 43 0 0 chr4 140574979 140575026 -43713636 + AT_rich Low_complexity Low_complexity 1 47 0 384 269 74 109 chr4 140575029 140575204 -43713458 + MLT1J LTR MaLR 30 198 -313 7058 37 2 0 chr4 140575374 140576221 -43712441 + L1PA4 LINE L1 5304 6152 -3 28 0 0 0 chr4 140576221 140576249 -43712413 + AT_rich Low_complexity Low_complexity 1 28 0 276 353 27 49 chr4 140576509 140576733 -43711929 - L2 LINE L2 -131 3182 2964 1861 145 0 40 chr4 140576799 140577124 -43711538 - AluSx SINE Alu 0 312 1 24072 38 3 0 chr4 140577359 140580326 -43708336 - L1P LINE L1 -898 5248 2275 415 320 0 0 chr4 140580487 140580643 -43708019 + T-rich Low_complexity Low_complexity 1 156 0 879 203 6 28 chr4 140581079 140581261 -43707401 - FRAM SINE Alu -5 171 1 1643 198 49 14 chr4 140581330 140581674 -43706988 - MLT1A1 LTR MaLR 0 365 10 4292 194 34 9 chr4 140582194 140583554 -43705108 - L1MB1 LINE L1 0 6168 4773 255 244 0 0 chr4 140583613 140583691 -43704971 + CT-rich Low_complexity Low_complexity 4 81 0 1343 212 79 3 chr4 140584052 140584368 -43704294 + MER58B DNA MER1_type 1 340 -1 189 0 0 0 chr4 140585768 140585789 -43702873 + (TC)n Simple_repeat Simple_repeat 2 22 0 392 335 142 43 chr4 140585925 140586736 -43701926 + L2 LINE L2 1819 2709 -605 15100 55 5 16 chr4 140587723 140589675 -43698987 + L1P LINE L1 4 1932 -4214 183 80 0 0 chr4 140590666 140590691 -43697971 + (TTTTTA)n Simple_repeat Simple_repeat 4 28 0 2223 206 82 4 chr4 140591643 140592108 -43696554 + MLT2B2 LTR ERVL 15 515 0 339 176 27 27 chr4 140592452 140592526 -43696136 - MER58B DNA MER1_type -2 339 266 290 287 0 30 chr4 140592580 140592681 -43695981 - MIR SINE MIR -55 207 110 688 283 72 72 chr4 140593759 140594257 -43694405 - HAL1 LINE L1 -2007 500 3 1525 192 3 28 chr4 140594307 140594625 -43694037 - AluJo SINE Alu 0 312 3 32 0 0 0 chr4 140594786 140594818 -43693844 + AT_rich Low_complexity Low_complexity 1 32 0 2008 120 56 0 chr4 140594935 140595219 -43693443 - AluSx SINE Alu -12 300 1 1185 257 93 58 chr4 140595302 140595632 -43693030 - L1MC5 LINE L1 -585 7376 7059 1574 193 13 46 chr4 140595632 140596005 -43692657 + MLT1A1 LTR MaLR 5 365 0 1185 257 93 58 chr4 140596005 140596547 -43692115 - L1MC5 LINE L1 -902 7059 6475 951 255 38 78 chr4 140596684 140597080 -43691582 - LTR16A1 LTR ERVL 0 457 78 5391 134 15 19 chr4 140597083 140598318 -43690344 - L1PA11 LINE L1 -588 5586 4357 3845 118 9 0 chr4 140598320 140598908 -43689754 + L1PA11 LINE L1 5598 6190 0 279 329 0 0 chr4 140598909 140598985 -43689677 - LTR16A1 LTR ERVL -375 82 7 719 144 0 0 chr4 140599173 140599291 -43689371 - L1MA6 LINE L1 -107 6193 6076 * 965 141 31 6 chr4 140599277 140599440 -43689222 + L1MA7 LINE L1 5777 5943 -348 1126 355 45 31 chr4 140599458 140600554 -43688108 - HERVL LTR ERVL -439 5325 4180 314 196 65 33 chr4 140600557 140600649 -43688013 + MER3 DNA MER1_type 110 204 -5 25 75 0 0 chr4 140601193 140601246 -43687416 + AT_rich Low_complexity Low_complexity 1 53 0 1064 256 30 68 chr4 140601315 140601662 -43687000 + L1MC4 LINE L1 6625 6986 -1024 1880 162 6 6 chr4 140601666 140601980 -43686682 - Tigger3(Golem) DNA MER2_type -4 3025 2712 795 212 0 0 chr4 140601966 140602103 -43686559 - Tigger3(Golem) DNA MER2_type -2892 137 1 * 880 209 61 79 chr4 140602103 140602425 -43686237 + L1MC5 LINE L1 6936 7262 -699 1435 161 115 10 chr4 140602425 140602522 -43686140 + MER44D DNA MER2_type 3 88 -2403 231 36 0 0 chr4 140602522 140602550 -43686112 + (GA)n Simple_repeat Simple_repeat 1 28 0 1435 161 115 10 chr4 140602550 140602655 -43686007 + MER44D DNA MER2_type 88 181 -2310 180 0 0 0 chr4 140602655 140602675 -43685987 + (TATG)n Simple_repeat Simple_repeat 2 21 0 1435 161 115 10 chr4 140602675 140602776 -43685886 + MER44D DNA MER2_type 181 609 0 880 209 61 79 chr4 140602776 140602831 -43685831 + L1MC5 LINE L1 7262 7306 -655 595 250 83 31 chr4 140603013 140603373 -43685289 + L1MC5 LINE L1 7539 7917 -44 2209 109 0 28 chr4 140604210 140604530 -43684132 + AluSq SINE Alu 3 313 0 1035 118 7 0 chr4 140606225 140606378 -43682284 - L1PA16 LINE L1 -9 6157 6004 1705 128 24 95 chr4 140606885 140607221 -43681441 + AluYb8 SINE Alu 1 312 -6 308 177 0 0 chr4 140607224 140607286 -43681376 + L1PB4 LINE L1 6094 6155 -1 437 299 91 0 chr4 140607583 140607737 -43680925 + MIR SINE MIR 89 256 -6 6622 219 61 22 chr4 140608293 140608717 -43679945 - L1MB3 LINE L1 -179 7423 7017 180 0 0 0 chr4 140608717 140608737 -43679925 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 6622 219 61 22 chr4 140608737 140610545 -43678117 - L1MB3 LINE L1 -585 7017 5108 426 215 86 25 chr4 140610517 140610680 -43677982 - L1MB3 LINE L1 -2933 4632 4460 * 2401 241 59 24 chr4 140610664 140611988 -43676674 - L1MB3 LINE L1 -3320 4245 2868 970 242 77 8 chr4 140611999 140612247 -43676415 + MER77 LTR ERV1 333 597 -8 296 308 63 63 chr4 140613496 140613639 -43675023 - MIR SINE MIR -50 212 70 4952 149 29 3 chr4 140615254 140616178 -43672484 - L1P5 LINE L1 -1080 5066 4119 1338 196 17 12 chr4 140616180 140616535 -43672127 + L1P5 LINE L1 5083 5447 -709 2468 287 77 18 chr4 140616846 140617746 -43670916 + MER45C DNA AcHobo 1 953 0 361 296 97 38 chr4 140618610 140618796 -43669866 - MLT1K LTR MaLR -355 233 37 23 92 0 0 chr4 140620133 140620198 -43668464 + AT_rich Low_complexity Low_complexity 1 65 0 219 387 80 7 chr4 140620201 140620338 -43668324 - MIR SINE MIR -111 151 5 251 211 47 39 chr4 140620534 140620662 -43668000 + L1MEd LINE L1 59 187 -5932 358 289 43 48 chr4 140620774 140620961 -43667701 + L1MEd LINE L1 652 837 -5282 23 33 0 0 chr4 140620972 140621002 -43667660 + AT_rich Low_complexity Low_complexity 1 30 0 333 250 0 88 chr4 140621115 140621160 -43667502 - L1MB8 LINE L1 -3 6175 6128 1427 206 45 24 chr4 140621160 140621452 -43667210 + AluJo SINE Alu 1 298 -14 333 250 0 88 chr4 140621452 140621542 -43667120 - L1MB8 LINE L1 -50 6128 6052 574 244 52 37 chr4 140621603 140621851 -43666811 + L1ME1 LINE L1 5925 6332 -2 246 285 31 15 chr4 140621844 140621974 -43666688 + L1MEd LINE L1 945 1076 -5043 * 1282 268 111 55 chr4 140621985 140622527 -43666135 + MLT1E LTR MaLR 22 593 0 260 269 33 130 chr4 140622530 140623022 -43665640 + L1MEd LINE L1 1084 1627 -863 1663 102 51 0 chr4 140623543 140623797 -43664865 - L1PA10 LINE L1 -11 6157 5891 2442 112 35 5 chr4 140623797 140624172 -43664490 + L1PA10 LINE L1 5476 5861 -313 1371 161 131 7 chr4 140624366 140624640 -43664022 - AluJo SINE Alu -4 308 1 259 221 29 15 chr4 140625540 140625608 -43663054 - L1M3f LINE L1 -4733 595 527 405 252 56 49 chr4 140625842 140625985 -43662677 - MIR3 SINE MIR -54 154 11 213 366 82 0 chr4 140626615 140626749 -43661913 - MIR3 SINE MIR -23 185 41 327 25 0 0 chr4 140627030 140627070 -43661592 + (CTG)n Simple_repeat Simple_repeat 3 42 0 216 329 37 0 chr4 140627146 140627228 -43661434 - MIR SINE MIR -59 203 119 1815 176 35 35 chr4 140627847 140628250 -43660412 - L1MA8 LINE L1 -3 6288 5886 396 0 0 0 chr4 140628696 140628740 -43659922 + (TG)n Simple_repeat Simple_repeat 2 45 0 29815 53 0 5 chr4 140629183 140632948 -43655714 + L1P LINE L1 1 3745 -2401 593 211 25 116 chr4 140633048 140633167 -43655495 + L1MA9 LINE L1 6025 6153 -159 2541 62 0 3 chr4 140633167 140633476 -43655186 - AluY SINE Alu -3 308 1 593 211 25 116 chr4 140633476 140633640 -43655022 + L1MA9 LINE L1 6153 6282 -30 1579 190 16 7 chr4 140633657 140633962 -43654700 + AluJo SINE Alu 3 310 -2 2166 185 65 109 chr4 140633962 140634610 -43654052 + MER45B DNA AcHobo 420 1040 0 610 228 56 4 chr4 140634853 140635084 -43653578 - L1MA8 LINE L1 0 6291 6050 249 254 0 0 chr4 140635539 140635598 -43653064 + MIR SINE MIR 96 154 -108 4577 199 42 2 chr4 140635668 140636675 -43651987 + L1 LINE L1 3404 4450 -1696 11117 134 25 13 chr4 140636684 140637502 -43651160 - Tigger1 DNA MER2_type -6 2412 1605 1494 161 25 62 chr4 140637502 140637826 -43650836 - AluJo SINE Alu 0 312 1 11117 134 25 13 chr4 140637826 140638561 -43650101 - Tigger1 DNA MER2_type -813 1605 831 1617 140 98 32 chr4 140638561 140638846 -43649816 - AluSx SINE Alu -8 304 1 11117 134 25 13 chr4 140638846 140639109 -43649553 - Tigger1 DNA MER2_type -1587 831 573 1921 168 70 32 chr4 140639387 140639827 -43648835 + MSTB2 LTR MaLR 1 457 0 765 236 80 36 chr4 140641105 140641381 -43647281 + LTR52 LTR ERVL 44 331 -90 11564 191 30 10 chr4 140641385 140641906 -43646756 - L1MA4 LINE L1 -8 6474 5965 1843 122 63 0 chr4 140641906 140642192 -43646470 - AluSx SINE Alu -8 304 1 11564 191 30 10 chr4 140642192 140644347 -43644315 - L1MA4 LINE L1 -517 5965 3710 1916 110 11 0 chr4 140644347 140644611 -43644051 - AluSc SINE Alu -13 296 30 11564 191 30 10 chr4 140644611 140645416 -43643246 - L1MA4 LINE L1 -2772 3710 2923 6378 187 48 31 chr4 140645394 140647496 -43641166 - L1MA4 LINE L1 -4065 1263 6 * 4359 68 1 176 chr4 140648893 140649276 -43639386 + LTR12 LTR ERV1 1 161 -527 2159 88 0 0 chr4 140649276 140649550 -43639112 - AluY SINE Alu -9 302 29 4359 68 1 176 chr4 140649550 140650000 -43638662 + LTR12 LTR ERV1 161 688 0 28 29 0 0 chr4 140650443 140650478 -43638184 + AT_rich Low_complexity Low_complexity 1 35 0 1208 196 106 29 chr4 140650505 140650780 -43637882 - AluJb SINE Alu -5 297 2 328 397 0 0 chr4 140651047 140651178 -43637484 - MIR3 SINE MIR -25 183 53 277 250 194 51 chr4 140651184 140651380 -43637282 + MIR SINE MIR 15 238 -24 222 182 23 0 chr4 140651972 140652016 -43636646 - L2 LINE L2 -13 3259 3215 1948 144 10 7 chr4 140652220 140652526 -43636136 + AluSx SINE Alu 2 308 -4 1135 177 35 107 chr4 140652601 140652918 -43635744 - MLT1C LTR MaLR -173 294 1 2603 30 0 0 chr4 140653196 140653493 -43635169 - AluY SINE Alu -14 297 1 21 36 0 0 chr4 140654381 140654409 -43634253 + AT_rich Low_complexity Low_complexity 1 28 0 1719 151 58 39 chr4 140654418 140654782 -43633880 + THE1C LTR MaLR 5 375 0 216 209 0 0 chr4 140655821 140655864 -43632798 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 25 0 0 0 chr4 140655905 140655930 -43632732 + AT_rich Low_complexity Low_complexity 1 25 0 7513 109 7 1 chr4 140655967 140657114 -43631548 - L1P LINE L1 -2508 3638 2485 776 251 12 0 chr4 140657175 140657346 -43631316 - LTR40a LTR ERVL -346 173 1 840 269 77 36 chr4 140657939 140658378 -43630284 - L1ME3A LINE L1 -193 5977 5521 441 254 152 17 chr4 140658438 140658618 -43630044 - MIR SINE MIR -21 241 39 588 281 44 28 chr4 140658629 140659163 -43629499 - L1M2 LINE L1 -710 5468 4969 2359 173 31 26 chr4 140659165 140659623 -43629039 + MLT2C2 LTR ERVL 3 462 -2 606 247 32 21 chr4 140659625 140659811 -43628851 + HERVL-C2 LTR ERVL 1 188 -5466 15827 218 54 41 chr4 140659825 140663589 -43625073 + HERVL-C2 LTR ERVL 318 4130 -1634 578 286 47 78 chr4 140663590 140664269 -43624393 - L1MEd LINE L1 -4935 1184 527 1926 179 14 8 chr4 140664597 140664960 -43623702 - MLT1A1 LTR MaLR 0 365 1 186 118 0 0 chr4 140665139 140665173 -43623489 + (TG)n Simple_repeat Simple_repeat 2 35 0 196 307 98 18 chr4 140665812 140665975 -43622687 + L3b LINE CR1 1108 1283 -300 818 245 0 0 chr4 140665995 140666150 -43622512 - MER5B DNA MER1_type -3 175 21 224 314 39 78 chr4 140666281 140666325 -43622337 + L3b LINE CR1 1296 1340 -243 2463 66 0 0 chr4 140666325 140666629 -43622033 + AluY SINE Alu 2 305 -6 224 314 39 78 chr4 140666629 140666737 -43621925 + L3b LINE CR1 1340 1442 -141 302 274 59 39 chr4 140666776 140666878 -43621784 + MIR SINE MIR 29 132 -130 291 239 45 45 chr4 140666876 140666964 -43621698 - L2 LINE L2 0 3313 3226 * 200 314 14 14 chr4 140666984 140667054 -43621608 + MIR SINE MIR 157 226 -36 24 67 0 0 chr4 140667054 140667099 -43621563 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr4 140667120 140667143 -43621519 + AT_rich Low_complexity Low_complexity 1 23 0 1501 196 46 51 chr4 140668264 140668656 -43620006 + MLT1B LTR MaLR 1 390 0 6174 41 1 1 chr4 140669080 140669830 -43618832 - L1PA4 LINE L1 -3 6152 5403 12723 29 1 1 chr4 140669880 140671414 -43617248 - L1PA4 LINE L1 -752 5394 3861 2433 186 16 22 chr4 140671514 140672004 -43616658 - Tigger1 DNA MER2_type -1930 488 2 4249 192 13 22 chr4 140672009 140673674 -43614988 + L1MB1 LINE L1 4456 6110 -58 1473 124 0 9 chr4 140673674 140673912 -43614750 - AluSc SINE Alu 0 299 64 4249 192 13 22 chr4 140673912 140673940 -43614722 + L1MB1 LINE L1 6110 6137 -31 1850 148 30 3 chr4 140673943 140674246 -43614416 + AluJb SINE Alu 1 311 -1 2580 186 58 20 chr4 140674310 140674518 -43614144 + L1MB5 LINE L1 5596 5795 -379 2420 73 23 0 chr4 140674518 140674818 -43613844 - AluY SINE Alu -4 307 1 2580 186 58 20 chr4 140674818 140675159 -43613503 + L1MB5 LINE L1 5795 6166 -8 366 23 0 0 chr4 140675825 140675868 -43612794 + (CA)n Simple_repeat Simple_repeat 1 43 0 180 387 0 0 chr4 140676378 140676440 -43612222 + L2 LINE L2 3201 3262 -10 1944 142 49 12 chr4 140676478 140676803 -43611859 - MER1B DNA MER1_type 0 337 1 363 200 95 48 chr4 140676936 140677041 -43611621 + MIR SINE MIR 132 241 -21 2134 122 7 0 chr4 140678271 140678574 -43610088 - AluSx SINE Alu -4 308 4 2035 127 3 0 chr4 140679792 140680076 -43608586 + AluSq SINE Alu 15 299 -14 2150 99 0 37 chr4 140680944 140681268 -43607394 - AluSx SINE Alu 0 312 1 25 83 0 0 chr4 140681460 140681520 -43607142 + AT_rich Low_complexity Low_complexity 1 60 0 1312 179 0 18 chr4 140681520 140681603 -43607059 - L1PB4 LINE L1 -32 6124 6042 7311 189 44 7 chr4 140681603 140683736 -43604926 - L1MA5 LINE L1 -262 6038 3805 2632 177 11 41 chr4 140683734 140684343 -43604319 + L1MA5 LINE L1 3219 3809 -2337 * 197 250 94 0 chr4 140684460 140684524 -43604138 - MIR SINE MIR -8 254 185 281 302 124 8 chr4 140684809 140684938 -43603724 + MIR SINE MIR 3 146 -116 952 291 84 29 chr4 140684938 140685388 -43603274 - LTR16C LTR ERVL 0 491 17 214 319 0 29 chr4 140685395 140685464 -43603198 + MIR SINE MIR 158 224 -38 48 43 0 0 chr4 140685559 140685628 -43603034 + AT_rich Low_complexity Low_complexity 1 69 0 22 88 0 0 chr4 140687042 140687099 -43601563 + AT_rich Low_complexity Low_complexity 1 57 0 255 391 45 11 chr4 140687905 140688084 -43600578 + L2 LINE L2 2889 3073 -199 286 64 0 43 chr4 140688102 140688149 -43600513 + MADE1 DNA Mariner 2 46 -34 398 265 35 47 chr4 140688154 140688324 -43600338 + L2 LINE L2 3127 3294 -19 267 343 0 0 chr4 140688609 140688679 -43599983 - L2 LINE L2 -677 2637 2568 298 253 13 0 chr4 140688834 140688909 -43599753 - MER116 DNA Mariner 0 80 5 996 171 99 8 chr4 140689448 140689700 -43598962 - Charlie1 DNA MER1_type -2 2759 2485 2109 92 27 0 chr4 140690007 140690301 -43598361 + AluSg SINE Alu 1 302 -8 662 208 38 31 chr4 140690313 140690467 -43598195 - Charlie1 DNA MER1_type -285 2476 2322 2608 114 65 2 chr4 140690467 140690878 -43597784 - Tigger3(Golem) DNA MER2_type -3 3026 2590 3636 136 32 7 chr4 140690878 140691479 -43597183 + LTR8A LTR ERV1 1 616 -111 1081 156 6 6 chr4 140691488 140691668 -43596994 - Tigger3(Golem) DNA MER2_type -708 2321 2142 840 210 44 17 chr4 140691662 140691843 -43596819 - Tigger3(Golem) DNA MER2_type -2843 186 1 * 3505 190 66 19 chr4 140691843 140692626 -43596036 - Charlie1 DNA MER1_type -441 2320 1501 2116 210 25 9 chr4 140692631 140693065 -43595597 + LTR53 LTR ERVL 75 515 -4 5164 223 50 25 chr4 140693069 140694417 -43594245 - Charlie1 DNA MER1_type -1378 1383 1 471 257 53 97 chr4 140694508 140695236 -43593426 + L1MC4a LINE L1 5263 5949 -172 601 207 233 0 chr4 140695363 140695513 -43593149 + MER20 DNA MER1_type 24 208 -11 202 241 169 24 chr4 140695521 140695604 -43593058 - L2 LINE L2 0 3272 3178 446 273 92 19 chr4 140695714 140695974 -43592688 + L1ME4a LINE L1 5597 5875 -246 444 255 38 13 chr4 140696023 140696180 -43592482 + L1ME4a LINE L1 5960 6120 -1 511 270 70 25 chr4 140696365 140696565 -43592097 - MIR SINE MIR -18 244 36 3198 163 2 42 chr4 140697859 140698454 -43590208 + L1MB4 LINE L1 5377 5947 -233 1575 190 27 7 chr4 140698559 140698854 -43589808 + AluJo SINE Alu 1 301 -11 757 179 0 14 chr4 140699461 140699606 -43589056 + FLAM_C SINE Alu 1 143 0 24 32 0 0 chr4 140700071 140700102 -43588560 + AT_rich Low_complexity Low_complexity 1 31 0 24 67 0 0 chr4 140700628 140700673 -43587989 + AT_rich Low_complexity Low_complexity 1 45 0 476 122 27 0 chr4 140700857 140700931 -43587731 + MER63 DNA MER1_type 44 745 -317 1441 291 105 40 chr4 140700974 140701695 -43586967 + L2 LINE L2 1130 1897 -1417 481 335 86 30 chr4 140701699 140702036 -43586626 + LTR16C LTR ERVL 18 373 -118 2278 267 98 20 chr4 140702143 140702924 -43585738 + L2 LINE L2 1893 2742 -572 1893 218 98 29 chr4 140702924 140703406 -43585256 + MLT2B2 LTR ERVL 1 515 0 2278 267 98 20 chr4 140703406 140703436 -43585226 + L2 LINE L2 2742 2768 -546 404 316 98 23 chr4 140703427 140703601 -43585061 - MIR SINE MIR -71 191 5 * 201 385 8 8 chr4 140704029 140704179 -43584483 - MIR SINE MIR 0 208 59 918 252 75 12 chr4 140704398 140704720 -43583942 + L1ME LINE L1 3825 4166 -1980 468 316 13 7 chr4 140704724 140704879 -43583783 + L1ME LINE L1 5477 5632 -532 1247 49 31 9 chr4 140704879 140705123 -43583539 + (TTTC)n Simple_repeat Simple_repeat 2 428 0 1086 111 6 6 chr4 140705123 140705295 -43583367 - L1MA6 LINE L1 0 6300 6129 1037 189 5 0 chr4 140705295 140705491 -43583171 + L1PBa LINE L1 4 200 -6663 12760 116 100 11 chr4 140705491 140706677 -43581985 + L1PBa LINE L1 634 1713 -5149 4404 103 46 0 chr4 140706677 140707308 -43581354 - PABL_A LTR ERV1 0 660 1 12760 116 100 11 chr4 140707308 140708708 -43579954 + L1PBa LINE L1 1713 3442 -3420 1018 289 6 0 chr4 140708704 140709026 -43579636 + L1 LINE L1 3966 4289 -2573 * 2454 182 62 80 chr4 140709171 140710015 -43578647 + MER21A LTR ERV1 195 904 -27 188 358 0 0 chr4 140711450 140711517 -43577145 - L2 LINE L2 -694 2620 2554 585 189 7 49 chr4 140711722 140711865 -43576797 - MER58C DNA MER1_type 0 215 79 22 35 0 0 chr4 140712017 140712046 -43576616 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr4 140712129 140712166 -43576496 + AT_rich Low_complexity Low_complexity 1 37 0 218 378 87 8 chr4 140712854 140712981 -43575681 + L3 LINE CR1 1098 1234 -343 180 208 151 0 chr4 140713025 140713078 -43575584 + L3 LINE CR1 1237 1297 -280 213 205 0 0 chr4 140713079 140713118 -43575544 + (TCCA)n Simple_repeat Simple_repeat 3 41 0 222 282 58 29 chr4 140713269 140713372 -43575290 + MIR SINE MIR 117 222 -40 638 234 128 73 chr4 140713470 140713983 -43574679 - MLT1G1 LTR MaLR -6 543 1 536 366 81 36 chr4 140714810 140715195 -43573467 + L2 LINE L2 2871 3272 0 1347 102 5 0 chr4 140716466 140716653 -43572009 + AluSg/x SINE Alu 124 311 -1 1314 184 21 0 chr4 140716856 140717088 -43571574 - MLT1E2 LTR MaLR 0 626 390 4432 157 92 7 chr4 140717088 140717944 -43570718 + Tigger2 DNA MER2_type 1 929 -1789 * 9255 110 46 70 chr4 140717941 140719593 -43569069 + Tigger2 DNA MER2_type 1098 2710 -8 1165 203 169 3 chr4 140719600 140719890 -43568772 - MLT1E2 LTR MaLR -237 389 52 2295 88 7 0 chr4 140720645 140720939 -43567723 - AluSc SINE Alu -13 296 1 29 0 0 0 chr4 140723459 140723488 -43565174 + AT_rich Low_complexity Low_complexity 1 29 0 1738 86 25 8 chr4 140724754 140725024 -43563638 + AluY SINE Alu 41 314 0 2250 92 3 0 chr4 140725028 140725322 -43563340 + AluSc SINE Alu 1 295 -14 2137 122 3 3 chr4 140725327 140725639 -43563023 + AluSx SINE Alu 1 312 0 530 148 10 10 chr4 140726621 140726722 -43561940 - L1 LINE L1 -744 6821 6721 * 5239 229 49 14 chr4 140726707 140729490 -43559172 - L1 LINE L1 -2663 4902 2017 420 311 17 23 chr4 140729999 140730176 -43558486 - L1 LINE L1 -5769 1717 1542 221 175 25 0 chr4 140730871 140730911 -43557751 + MIR SINE MIR 113 153 -109 466 273 68 49 chr4 140731141 140731346 -43557316 + MLT1L LTR MaLR 258 466 -149 1094 231 89 36 chr4 140731359 140731696 -43556966 + MLT1A1 LTR MaLR 11 365 0 245 291 27 18 chr4 140731717 140731827 -43556835 + MLT1L LTR MaLR 496 606 -9 375 78 0 0 chr4 140732431 140732482 -43556180 + (CA)n Simple_repeat Simple_repeat 1 51 0 21 36 0 0 chr4 140732833 140732861 -43555801 + AT_rich Low_complexity Low_complexity 1 28 0 531 295 98 34 chr4 140732895 140733281 -43555381 + HAL1 LINE L1 1220 1630 -877 1319 233 88 64 chr4 140733289 140733895 -43554767 + MLT1E3 LTR MaLR 5 624 0 23 33 0 0 chr4 140734103 140734133 -43554529 + AT_rich Low_complexity Low_complexity 1 30 0 343 280 77 24 chr4 140734133 140734301 -43554361 - MLT1F1 LTR MaLR -5 562 386 218 388 61 0 chr4 140734606 140734704 -43553958 - L2 LINE L2 -32 3240 3137 27 0 0 0 chr4 140735455 140735482 -43553180 + AT_rich Low_complexity Low_complexity 1 27 0 216 261 31 0 chr4 140735728 140735793 -43552869 + (TA)n Simple_repeat Simple_repeat 2 68 0 239 337 12 0 chr4 140735902 140735985 -43552677 + L2 LINE L2 2893 2976 -296 191 341 114 23 chr4 140736159 140736247 -43552415 + L2 LINE L2 3168 3263 -9 346 316 56 37 chr4 140736864 140737079 -43551583 + L1MCc LINE L1 31 249 -6174 27 49 0 0 chr4 140737178 140737219 -43551443 + AT_rich Low_complexity Low_complexity 1 41 0 1563 270 74 37 chr4 140737247 140737932 -43550730 + L1M4 LINE L1 2721 3462 -2684 2143 130 7 0 chr4 140737932 140738231 -43550431 + AluSx SINE Alu 1 301 -11 1563 270 74 37 chr4 140738231 140738627 -43550035 + L1M4 LINE L1 3462 3842 -2304 1759 183 5 0 chr4 140738635 140739002 -43549660 - L1 LINE L1 -1401 4745 4377 5233 137 20 77 chr4 140739050 140740540 -43548122 + L1PB1 LINE L1 4749 6147 -4 5250 214 29 25 chr4 140740557 140740690 -43547972 - L1M4 LINE L1 -398 5780 5649 207 0 0 0 chr4 140740690 140740713 -43547949 + (TA)n Simple_repeat Simple_repeat 2 24 0 5250 214 29 25 chr4 140740713 140740739 -43547923 - L1M4 LINE L1 -529 5649 5625 1568 209 103 7 chr4 140740739 140741165 -43547497 + MLT1C LTR MaLR 1 467 0 5250 214 29 25 chr4 140741165 140742837 -43545825 - L1M4 LINE L1 -553 5625 3943 1870 200 42 16 chr4 140742832 140743281 -43545381 - L1MA9 LINE L1 -32 6280 5820 * 419 174 2 83 chr4 140743332 140743373 -43545289 + L1M LINE L1 5272 5315 -841 2151 110 7 0 chr4 140743373 140743663 -43544999 + AluSc SINE Alu 16 307 -2 419 174 2 83 chr4 140743663 140743762 -43544900 + L1M LINE L1 5315 5401 -755 * 2436 187 51 21 chr4 140743760 140744447 -43544215 - L1MC2 LINE L1 -514 6248 5540 3258 209 79 43 chr4 140744459 140744884 -43543778 - L1MC2 LINE L1 -4851 1194 786 2195 115 0 3 chr4 140744884 140745189 -43543473 + AluSc SINE Alu 1 304 -5 3258 209 79 43 chr4 140745189 140745907 -43542755 - L1MC2 LINE L1 -5259 786 208 2779 111 144 156 chr4 140745924 140747046 -43541616 - pTR5 LTR ERV1 -24 1641 6 720 199 127 17 chr4 140747201 140747382 -43541280 - L1MC2 LINE L1 -6203 361 161 885 272 56 46 chr4 140747421 140747744 -43540918 + LTR40a LTR ERVL 112 437 -82 2556 86 6 0 chr4 140747842 140748190 -43540472 - L1PB1 LINE L1 -6 6145 5796 225 0 0 0 chr4 140748192 140748217 -43540445 + (TA)n Simple_repeat Simple_repeat 2 26 0 649 121 15 0 chr4 140748350 140748466 -43540196 - L1PB1 LINE L1 -335 5819 5699 461 204 0 0 chr4 140748466 140748554 -43540108 + LTR40b LTR ERVL 375 462 0 1043 255 95 19 chr4 140748558 140748970 -43539692 + L1ME2 LINE L1 5670 6112 -52 1490 249 41 34 chr4 140748975 140749417 -43539245 - MER119 DNA MER1_type -138 445 1 581 278 94 13 chr4 140749580 140749814 -43538848 + MIR SINE MIR 8 260 -2 228 163 0 0 chr4 140750326 140750369 -43538293 + GA-rich Low_complexity Low_complexity 2 44 0 664 324 114 33 chr4 140751967 140752727 -43535935 + L1MEd LINE L1 436 1257 -4862 283 296 58 30 chr4 140752761 140752998 -43535664 + L1MEd LINE L1 1339 1639 -851 21 57 0 0 chr4 140753191 140753226 -43535436 + AT_rich Low_complexity Low_complexity 1 35 0 324 324 162 15 chr4 140753825 140754029 -43534633 - MIR SINE MIR -13 249 16 1862 161 0 16 chr4 140754666 140754976 -43533686 + AluJo SINE Alu 5 309 -3 264 287 173 16 chr4 140755090 140755344 -43533318 + L1ME LINE L1 5492 5785 -336 39 38 0 0 chr4 140755412 140755465 -43533197 + AT_rich Low_complexity Low_complexity 1 53 0 307 325 80 20 chr4 140756010 140756161 -43532501 - MIR SINE MIR -75 187 28 579 202 0 0 chr4 140756432 140756531 -43532131 - Tigger2 DNA MER2_type 0 2718 2620 876 129 22 0 chr4 140756533 140756672 -43531990 - Tigger2 DNA MER2_type -554 2164 2023 725 254 33 43 chr4 140756672 140756948 -43531714 + pTR5 LTR ERV1 743 1015 -1423 3630 150 47 48 chr4 140757136 140757824 -43530838 + LTR12 LTR ERV1 1 687 -1 710 92 100 8 chr4 140757825 140757945 -43530717 + LTR12 LTR ERV1 582 712 -2 530 75 215 0 chr4 140757945 140758038 -43530624 - Tigger2 DNA MER2_type -690 2028 1916 270 0 0 0 chr4 140758261 140758291 -43530371 + (T)n Simple_repeat Simple_repeat 1 30 0 9884 173 36 3 chr4 140758291 140760099 -43528563 - Tigger2 DNA MER2_type -800 1918 52 1999 138 3 0 chr4 140760455 140760751 -43527911 + AluSq SINE Alu 1 297 -16 307 291 55 16 chr4 140760938 140761065 -43527597 + MIR SINE MIR 77 208 -54 5278 135 16 18 chr4 140761888 140762762 -43525900 - MER4D LTR ERV1 0 872 1 3566 178 42 60 chr4 140762762 140763606 -43525056 - MER4D-int LTR ERV1 0 6758 5931 308 227 87 40 chr4 140764247 140764397 -43524265 - MER4D-int LTR ERV1 -1865 4733 4577 * 727 163 49 78 chr4 140764380 140764625 -43524037 - MER4D-int LTR ERV1 -2581 4017 3780 368 133 0 17 chr4 140764626 140764686 -43523976 - MER4D-int LTR ERV1 -3693 2638 2580 * 611 199 40 55 chr4 140764653 140764854 -43523808 - MER4D-int LTR ERV1 -4887 1711 1514 2496 204 111 92 chr4 140764855 140765337 -43523325 - MER4D-int LTR ERV1 -3510 2436 1965 366 23 0 0 chr4 140765337 140765380 -43523282 + (CA)n Simple_repeat Simple_repeat 1 43 0 2496 204 111 92 chr4 140765380 140766228 -43522434 - MER4D-int LTR ERV1 -3981 1965 1135 198 0 0 0 chr4 140766228 140766250 -43522412 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2496 204 111 92 chr4 140766250 140766360 -43522302 - MER4D-int LTR ERV1 -4811 1135 109 1012 119 26 0 chr4 140766445 140766596 -43522066 - MER4D LTR ERV1 0 872 718 1008 188 23 6 chr4 140766594 140766770 -43521892 + MER4D LTR ERV1 24 202 -701 * 695 181 6 50 chr4 140766771 140766931 -43521731 + MER4-int LTR ERV1 281 433 -6165 3643 169 9 5 chr4 140766931 140767563 -43521099 + MER4D LTR ERV1 238 872 0 226 275 64 46 chr4 140768802 140768911 -43519751 + MER103 DNA DNA 14 124 -42 3583 223 92 110 chr4 140768924 140769558 -43519104 - L1M4 LINE L1 -994 5152 4509 615 227 99 7 chr4 140769558 140769699 -43518963 - MER58B DNA MER1_type -1 340 187 3583 223 92 110 chr4 140769699 140769782 -43518880 - L1M4 LINE L1 -1637 4509 4426 1875 153 21 9 chr4 140769782 140770116 -43518546 - MER44D DNA MER2_type -1 608 1 3583 223 92 110 chr4 140770116 140771573 -43517089 - L1M4 LINE L1 -1720 4426 2877 2449 139 18 48 chr4 140772397 140772836 -43515826 + MSTB LTR MaLR 1 426 0 279 79 0 0 chr4 140773444 140773482 -43515180 + (CATA)n Simple_repeat Simple_repeat 3 40 0 213 200 0 0 chr4 140773553 140773598 -43515064 - L2 LINE L2 -4 3309 3265 22 0 0 0 chr4 140774024 140774046 -43514616 + AT_rich Low_complexity Low_complexity 1 22 0 1944 187 35 33 chr4 140774055 140774611 -43514051 + MLT2A2 LTR ERVL 1 554 0 796 287 38 0 chr4 140775030 140775239 -43513423 + MIR SINE MIR 19 235 -27 22 35 0 0 chr4 140775600 140775629 -43513033 + AT_rich Low_complexity Low_complexity 1 29 0 29 47 0 0 chr4 140775664 140775707 -43512955 + AT_rich Low_complexity Low_complexity 1 43 0 32 86 0 0 chr4 140777201 140777282 -43511380 + AT_rich Low_complexity Low_complexity 1 81 0 496 139 12 23 chr4 140779527 140779613 -43509049 + FRAM SINE Alu 38 122 -54 530 222 275 0 chr4 140780581 140780752 -43507910 - MIR SINE MIR 0 262 45 22 70 0 0 chr4 140780908 140780951 -43507711 + AT_rich Low_complexity Low_complexity 1 43 0 218 244 0 13 chr4 140781491 140781569 -43507093 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 207 301 147 19 chr4 140781759 140781915 -43506747 - MIR SINE MIR -21 241 66 4205 26 20 4 chr4 140782897 140783400 -43505262 + L1PA5 LINE L1 5643 6153 -1 194 0 0 37 chr4 140783555 140783582 -43505080 + (TAA)n Simple_repeat Simple_repeat 2 27 0 890 248 98 49 chr4 140783646 140783973 -43504689 - Charlie2 DNA MER1_type -2507 355 13 2364 284 76 40 chr4 140784694 140785784 -43502878 + L2 LINE L2 1565 2693 -621 237 227 69 54 chr4 140785838 140785945 -43502717 - MLT1G1 LTR MaLR -24 571 410 1017 284 145 29 chr4 140787152 140787705 -43500957 - MLT1G LTR MaLR -5 585 1 870 286 60 17 chr4 140787706 140788095 -43500567 + L2 LINE L2 2688 3085 -228 323 176 14 27 chr4 140788106 140788180 -43500482 - MER46C DNA MER2_type -41 297 225 377 273 91 0 chr4 140788207 140788339 -43500323 - MER46C DNA MER2_type -194 144 1 503 240 20 40 chr4 140788344 140788494 -43500168 + L2 LINE L2 3159 3305 -8 180 125 0 0 chr4 140788518 140788550 -43500112 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 228 211 13 105 chr4 140789527 140789603 -43499059 + L2 LINE L2 3198 3266 -6 184 212 47 106 chr4 140789608 140789693 -43498969 - L2 LINE L2 -1343 1971 1892 197 365 58 10 chr4 140790446 140790550 -43498112 - L2 LINE L2 -17 3255 3147 214 363 33 60 chr4 140790583 140790798 -43497864 + L2 LINE L2 2872 3080 -192 344 261 66 19 chr4 140790865 140791015 -43497647 - MIR SINE MIR -59 149 34 221 130 0 130 chr4 140791569 140791623 -43497039 - MIR SINE MIR 0 262 216 598 298 20 0 chr4 140792328 140792479 -43496183 - MIR3 SINE MIR -27 181 28 253 181 0 28 chr4 140792694 140792766 -43495896 + (TA)n Simple_repeat Simple_repeat 1 70 0 1953 171 11 3 chr4 140792766 140793123 -43495539 + L1PB4 LINE L1 5782 6141 -15 664 251 5 15 chr4 140795111 140795306 -43493356 - L1MC4a LINE L1 -1903 6141 5949 728 261 29 25 chr4 140795582 140795823 -43492839 - LTR16A LTR ERVL 0 450 209 247 320 100 0 chr4 140796015 140796115 -43492547 + MIR3 SINE MIR 94 203 -5 39 0 0 0 chr4 140796342 140796381 -43492281 + AT_rich Low_complexity Low_complexity 1 39 0 650 251 64 0 chr4 140797820 140798007 -43490655 - MER58A DNA MER1_type -15 209 11 6091 136 48 15 chr4 140798275 140799350 -43489312 - Tigger3b DNA MER2_type -13 1218 108 1862 116 161 12 chr4 140799365 140799694 -43488968 + MSTA LTR MaLR 51 428 0 597 162 9 19 chr4 140799703 140799808 -43488854 - Tigger3b DNA MER2_type -1126 105 2 21 0 0 0 chr4 140800046 140800067 -43488595 + AT_rich Low_complexity Low_complexity 1 21 0 2274 56 42 7 chr4 140800170 140800457 -43488205 - AluY SINE Alu -14 297 1 2193 122 0 0 chr4 140800515 140800809 -43487853 - AluSg SINE Alu -16 294 1 271 269 31 8 chr4 140802050 140802180 -43486482 - L1MC4a LINE L1 -387 5970 5838 1355 266 67 36 chr4 140803237 140804071 -43484591 - L1M4c LINE L1 -3221 3161 2285 387 243 85 99 chr4 140804168 140804510 -43484152 + L1MC4a LINE L1 3608 3944 -2202 2662 161 64 82 chr4 140804593 140805238 -43483424 - MER39 LTR ERV1 0 707 75 441 0 0 0 chr4 140805651 140805700 -43482962 + (CA)n Simple_repeat Simple_repeat 2 50 0 264 298 46 40 chr4 140805789 140805940 -43482722 + L1MC4a LINE L1 5261 5412 -2396 318 339 83 16 chr4 140805957 140806199 -43482463 + L1MC4a LINE L1 5917 6174 -1634 23 33 0 0 chr4 140807516 140807546 -43481116 + AT_rich Low_complexity Low_complexity 1 30 0 185 227 91 0 chr4 140807553 140807597 -43481065 - L2 LINE L2 -8 3305 3258 1987 134 7 0 chr4 140808776 140809102 -43479560 + AluSq SINE Alu 1 328 0 594 265 105 15 chr4 140809203 140809403 -43479259 + MIR SINE MIR 20 237 -25 727 238 119 46 chr4 140809403 140809815 -43478847 - MER69 DNA AcHobo 0 2526 2085 333 220 0 0 chr4 140810298 140810357 -43478305 - MER69 DNA AcHobo -2467 59 1 34 0 0 0 chr4 140810458 140810492 -43478170 + AT_rich Low_complexity Low_complexity 1 34 0 452 322 121 48 chr4 140810698 140811095 -43477567 + LTR16A LTR ERVL 25 450 0 314 289 128 64 chr4 140811351 140811586 -43477076 + L2 LINE L2 2148 2397 -917 5730 98 95 118 chr4 140811605 140813184 -43475478 - pTR5 LTR ERV1 0 2438 743 294 375 102 29 chr4 140813209 140813723 -43474939 + L2 LINE L2 2446 3012 -260 1057 170 63 22 chr4 140813779 140814096 -43474566 - THE1C LTR MaLR 0 428 1 9039 148 22 32 chr4 140814096 140815677 -43472985 - THE1C-int LTR MaLR 0 1580 15 438 53 0 79 chr4 140815727 140815803 -43472859 + Alu SINE Alu 236 305 -5 1631 159 64 25 chr4 140815809 140816136 -43472526 - THE1C LTR MaLR -35 340 1 291 291 165 19 chr4 140816155 140816258 -43472404 + L2 LINE L2 3155 3272 0 218 321 48 0 chr4 140816367 140816451 -43472211 - L2 LINE L2 0 3313 3226 1658 276 99 37 chr4 140816563 140817323 -43471339 - L2 LINE L2 -1483 1831 1025 1162 299 159 16 chr4 140817342 140817900 -43470762 + L2 LINE L2 2120 2757 -557 2685 176 32 27 chr4 140817933 140818518 -43470144 - L1MA6 LINE L1 -243 6057 5470 3638 196 38 16 chr4 140818524 140819397 -43469265 - L1MA6 LINE L1 -814 5332 4441 12636 187 59 18 chr4 140819408 140822746 -43465916 - L1PB2 LINE L1 -2 6206 1923 2039 147 0 0 chr4 140822746 140823045 -43465617 - AluSq SINE Alu -14 299 1 12636 187 59 18 chr4 140823045 140825045 -43463617 - L1PB2 LINE L1 -4285 1923 8 6681 220 32 19 chr4 140825013 140826523 -43462139 - L1PBa LINE L1 -5219 1644 114 * 9504 241 67 25 chr4 140826583 140831695 -43456967 - L1 LINE L1 -1693 5095 7 25 99 0 0 chr4 140831811 140831892 -43456770 + AT_rich Low_complexity Low_complexity 1 81 0 412 273 80 34 chr4 140832185 140832361 -43456301 - MER63A DNA MER1_type 0 210 27 284 225 14 0 chr4 140832456 140832527 -43456135 - L1M4 LINE L1 -3654 3134 3063 1805 155 86 33 chr4 140832538 140832932 -43455730 - L1PA16 LINE L1 -2 6164 5750 277 307 63 8 chr4 140832931 140833058 -43455604 - L1M4 LINE L1 -6209 580 447 * 391 283 19 19 chr4 140833793 140833952 -43454710 + L1ME1 LINE L1 6003 6161 -5 248 416 0 0 chr4 140834277 140834390 -43454272 - L2 LINE L2 -8 3305 3193 259 250 40 48 chr4 140834808 140834932 -43453730 - HAL1 LINE L1 -1163 1344 1222 304 184 48 0 chr4 140835348 140835451 -43453211 + (TA)n Simple_repeat Simple_repeat 1 108 0 835 242 28 0 chr4 140836135 140836317 -43452345 + MER58A DNA MER1_type 30 216 -8 2819 282 138 40 chr4 140836566 140838429 -43450233 + L2 LINE L2 1022 3312 -1 209 326 95 0 chr4 140838721 140838816 -43449846 - L2 LINE L2 -315 2998 2895 3056 225 91 78 chr4 140839028 140840000 -43448662 + MSTD-int LTR MaLR 747 1730 -5 1281 217 58 58 chr4 140840015 140840411 -43448251 + MSTD LTR MaLR 1 396 0 2091 123 3 3 chr4 140840432 140840733 -43447929 - AluSp SINE Alu -12 301 1 231 320 30 30 chr4 140841977 140842077 -43446585 + MIR SINE MIR 157 256 -6 21 0 0 0 chr4 140844090 140844111 -43444551 + AT_rich Low_complexity Low_complexity 1 21 0 188 239 43 0 chr4 140844361 140844407 -43444255 - L2 LINE L2 -4 3268 3221 2669 225 77 3 chr4 140845118 140845820 -43442842 + L1MD2 LINE L1 660 1413 -4996 4981 242 49 21 chr4 140845826 140845969 -43442693 + L1MD2 LINE L1 2424 2561 -3845 1974 192 54 20 chr4 140845969 140846417 -43442245 + MLT1C LTR MaLR 5 467 0 4981 242 49 21 chr4 140846417 140848009 -43440653 + L1MD2 LINE L1 2561 4208 -2198 1963 178 57 0 chr4 140848028 140848377 -43440285 + MLT1B LTR MaLR 22 390 0 713 209 29 105 chr4 140848377 140848561 -43440101 + L1MD2 LINE L1 4195 4353 -2053 2219 123 98 20 chr4 140848561 140848958 -43439704 - MSTC LTR MaLR 0 428 1 713 209 29 105 chr4 140848958 140849050 -43439612 + L1MD2 LINE L1 4353 4450 -1956 2051 166 44 58 chr4 140849115 140849596 -43439066 + L1MD2 LINE L1 5678 6151 -468 2581 164 80 15 chr4 140849599 140850137 -43438525 + L1MC2 LINE L1 5767 6339 -5 2172 199 4 34 chr4 140850138 140850615 -43438047 + L1MD2 LINE L1 6141 6603 -16 250 365 19 0 chr4 140851733 140851837 -43436825 + MIR SINE MIR 46 151 -111 273 366 0 0 chr4 140851920 140852002 -43436660 - L2 LINE L2 -1 3271 3190 382 313 69 8 chr4 140852937 140853068 -43435594 - L2 LINE L2 0 3272 3134 876 283 21 4 chr4 140853103 140853343 -43435319 - MIR SINE MIR 0 262 19 334 286 223 18 chr4 140853618 140853891 -43434771 - L2 LINE L2 -58 3255 2927 439 305 136 11 chr4 140853934 140854206 -43434456 + L2 LINE L2 3004 3309 -4 269 323 40 10 chr4 140854455 140854554 -43434108 + MIR SINE MIR 158 259 -3 201 298 0 0 chr4 140854741 140854788 -43433874 - L2 LINE L2 -25 3247 3201 224 266 131 69 chr4 140854951 140855276 -43433386 - L2 LINE L2 -209 3063 2712 23 0 0 0 chr4 140855457 140855480 -43433182 + AT_rich Low_complexity Low_complexity 1 23 0 1187 124 144 0 chr4 140856302 140856503 -43432159 - MER30 DNA MER1_type 0 230 1 23 33 0 0 chr4 140856722 140856752 -43431910 + AT_rich Low_complexity Low_complexity 1 30 0 2317 61 4 0 chr4 140857917 140858219 -43430443 + AluY SINE Alu 1 303 0 438 381 50 64 chr4 140859022 140859445 -43429217 - L2 LINE L2 -15 3257 2841 1457 188 10 34 chr4 140859802 140860094 -43428568 + L1MA8 LINE L1 -717 4294966863 -6739 12092 204 70 28 chr4 140860105 140862375 -43426287 + L1MA8 LINE L1 1394 3568 -2959 180 0 0 0 chr4 140862375 140862395 -43426267 + (CAA)n Simple_repeat Simple_repeat 2 21 0 12092 204 70 28 chr4 140862395 140864025 -43424637 + L1MA8 LINE L1 3568 5644 -883 2196 123 7 0 chr4 140864025 140864335 -43424327 - AluSp SINE Alu -1 312 1 12092 204 70 28 chr4 140864335 140865256 -43423406 + L1MA8 LINE L1 5644 6525 -2 2286 79 0 3 chr4 140865424 140865715 -43422947 - AluY SINE Alu -20 291 2 3874 189 65 10 chr4 140865719 140867231 -43421431 - L1MA8 LINE L1 -3 6295 4659 2446 243 75 19 chr4 140868972 140869746 -43418916 + MER97b DNA MER1_type? 40 856 -197 10202 169 19 42 chr4 140870048 140871833 -43416829 + L1PA14 LINE L1 3398 5133 -1028 216 67 0 0 chr4 140871833 140871863 -43416799 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 10202 169 19 42 chr4 140871863 140872863 -43415799 + L1PA14 LINE L1 5133 6154 -7 46 19 0 0 chr4 140872864 140872917 -43415745 + AT_rich Low_complexity Low_complexity 1 53 0 2438 69 0 13 chr4 140873627 140873933 -43414729 + AluY SINE Alu 1 302 -9 6737 57 20 0 chr4 140874011 140875262 -43413400 - L1PA6 LINE L1 0 6154 4888 903 427 12 47 chr4 140875262 140875606 -43413056 - MER7A DNA MER2_type -16 330 1 229 263 12 25 chr4 140875829 140875909 -43412753 + Charlie4 DNA MER1_type 1882 1960 -1 207 255 21 0 chr4 140876033 140876080 -43412582 - MER5A DNA MER1_type -133 56 9 195 280 140 10 chr4 140876203 140876303 -43412359 + MIR SINE MIR 78 190 -72 23 0 0 0 chr4 140876864 140876887 -43411775 + AT_rich Low_complexity Low_complexity 1 23 0 2501 54 0 10 chr4 140878085 140878399 -43410263 + AluY SINE Alu 1 311 0 685 217 45 32 chr4 140878900 140879057 -43409605 - MER5A DNA MER1_type 0 189 31 237 297 36 90 chr4 140879332 140879443 -43409219 - L2 LINE L2 -209 3063 2959 243 0 0 0 chr4 140879633 140879660 -43409002 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 522 46 0 0 chr4 140880674 140880739 -43407923 + (CA)n Simple_repeat Simple_repeat 1 65 0 317 211 105 38 chr4 140881870 140882003 -43406659 - L1ME4a LINE L1 -24 6097 5956 360 356 99 14 chr4 140882049 140882271 -43406391 - L1ME4a LINE L1 -284 5837 5597 21 0 0 0 chr4 140884234 140884255 -43404407 + AT_rich Low_complexity Low_complexity 1 21 0 445 279 71 10 chr4 140884648 140884845 -43403817 - HAL1 LINE L1 -194 2313 2105 782 325 57 16 chr4 140885262 140885686 -43402976 + L1MCc LINE L1 70 510 -5913 2096 107 17 3 chr4 140885705 140885995 -43402667 + AluSc SINE Alu 1 294 -15 227 287 131 0 chr4 140886330 140886452 -43402210 + L1ME LINE L1 4906 5043 -1103 405 159 0 80 chr4 140886452 140886540 -43402122 - Charlie3 DNA MER1_type -4 2706 2626 1089 153 36 142 chr4 140886542 140886711 -43401951 - Charlie3 DNA MER1_type -283 246 115 1940 112 0 4 chr4 140886711 140886979 -43401683 + AluSq SINE Alu 43 309 -4 1089 153 36 142 chr4 140886979 140887083 -43401579 - Charlie3 DNA MER1_type -414 115 2 1300 222 126 7 chr4 140887083 140887639 -43401023 + L1ME LINE L1 5036 5644 -520 3117 128 22 0 chr4 140887662 140888154 -43400508 - L1PA13 LINE L1 0 6163 5661 1960 251 94 42 chr4 140888156 140888774 -43399888 + L1ME2 LINE L1 5385 6048 -116 2250 117 0 0 chr4 140888774 140889081 -43399581 + AluSx SINE Alu 3 309 -3 1960 251 94 42 chr4 140889081 140889194 -43399468 + L1ME2 LINE L1 6048 6154 -10 235 191 21 0 chr4 140889918 140889965 -43398697 + MARNA DNA Mariner 334 381 -205 1662 186 8 83 chr4 140890349 140890704 -43397958 + MER67C LTR ERV1 47 402 -243 273 284 0 0 chr4 140890715 140890796 -43397866 + MER67D LTR ERV1 356 436 -78 2364 60 0 41 chr4 140891194 140891512 -43397150 + AluY SINE Alu 1 305 -6 764 189 0 6 chr4 140892916 140893080 -43395582 + CT-rich Low_complexity Low_complexity 3 165 0 182 83 56 0 chr4 140895236 140895272 -43393390 + T-rich Low_complexity Low_complexity 3 40 0 268 43 21 21 chr4 140895939 140895986 -43392676 + (TTATA)n Simple_repeat Simple_repeat 3 49 0 54 0 0 0 chr4 140895986 140896040 -43392622 + AT_rich Low_complexity Low_complexity 1 54 0 2297 84 3 3 chr4 140896105 140896403 -43392259 - AluSp SINE Alu -8 305 8 864 271 103 6 chr4 140897392 140897694 -43390968 - MLT1J1 LTR MaLR -121 329 1 362 274 57 78 chr4 140898214 140898444 -43390218 - HAL1 LINE L1 -1200 1307 1083 2003 136 7 0 chr4 140898448 140898735 -43389927 - AluSx SINE Alu -23 289 1 285 246 105 41 chr4 140898769 140898940 -43389722 - HAL1 LINE L1 -1506 1001 820 943 316 65 11 chr4 140899425 140899779 -43388883 + L2 LINE L2 2941 3313 0 23 0 0 0 chr4 140899938 140899961 -43388701 + AT_rich Low_complexity Low_complexity 1 23 0 254 246 96 73 chr4 140900020 140900280 -43388382 + L1MC4a LINE L1 2881 3146 -3000 315 49 0 0 chr4 140900641 140900682 -43387980 + (CA)n Simple_repeat Simple_repeat 2 42 0 353 278 113 91 chr4 140901048 140901274 -43387388 + L1MC4a LINE L1 5316 5552 -569 1934 136 10 10 chr4 140901274 140901568 -43387094 - AluSg SINE Alu -14 296 3 353 278 113 91 chr4 140901568 140901650 -43387012 + L1MC4a LINE L1 5552 5631 -490 1061 153 6 0 chr4 140901651 140901814 -43386848 - AluSx SINE Alu -148 164 1 413 323 91 38 chr4 140901815 140902078 -43386584 + L1MC4a LINE L1 5622 5898 -1910 182 37 37 0 chr4 140902284 140902311 -43386351 + (CA)n Simple_repeat Simple_repeat 1 28 0 777 171 7 20 chr4 140902315 140902467 -43386195 - FRAM SINE Alu -11 165 16 5562 112 27 10 chr4 140902467 140903279 -43385383 + THE1C-int LTR MaLR 755 1580 0 2618 113 8 0 chr4 140903279 140903650 -43385012 + THE1C LTR MaLR 1 374 -1 1507 170 0 73 chr4 140904548 140904848 -43383814 + AluJb SINE Alu 1 278 -34 270 0 0 0 chr4 140904851 140904881 -43383781 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 51 92 0 0 chr4 140905284 140905426 -43383236 + AT_rich Low_complexity Low_complexity 1 142 0 698 168 59 0 chr4 140905429 140905548 -43383114 + FLAM_C SINE Alu 1 126 -7 4278 113 57 79 chr4 140905582 140906352 -43382310 - THE1C-int LTR MaLR -827 753 1 2538 133 0 3 chr4 140906352 140906728 -43381934 - THE1C LTR MaLR 0 375 1 226 350 103 8 chr4 140906945 140907062 -43381600 - MIR SINE MIR -61 147 20 1674 215 39 65 chr4 140907203 140907714 -43380948 + MLT1D LTR MaLR 3 500 -5 1226 229 82 133 chr4 140908263 140908460 -43380202 + HsTC2c DNA Tc2 5 210 -1688 1478 182 3 39 chr4 140908460 140908746 -43379916 + AluJb SINE Alu 37 312 0 1226 229 82 133 chr4 140908746 140909255 -43379407 + HsTC2c DNA Tc2 210 675 -54 221 277 60 0 chr4 140909448 140909531 -43379131 + MIR SINE MIR 105 192 -70 1338 249 90 61 chr4 140909687 140910144 -43378518 + MLT1F LTR MaLR 3 472 -70 3340 193 14 0 chr4 140910417 140911007 -43377655 - MER77 LTR ERV1 0 605 8 191 59 0 29 chr4 140911437 140911471 -43377191 + (TATAA)n Simple_repeat Simple_repeat 2 34 0 502 256 15 8 chr4 140913373 140913506 -43375156 - MER94 DNA DNA 0 134 1 302 278 68 68 chr4 140913790 140913966 -43374696 + L1MC4a LINE L1 5283 5458 -2350 505 292 42 25 chr4 140913968 140914204 -43374458 + L1MC4a LINE L1 5497 5736 -2072 193 333 17 0 chr4 140914257 140914317 -43374345 - MIR SINE MIR -16 246 186 800 278 5 5 chr4 140914319 140914510 -43374152 - MIR SINE MIR -25 237 47 480 246 0 0 chr4 140914583 140914697 -43373965 + L1MC4a LINE L1 5813 5926 -1882 339 85 0 0 chr4 140914706 140914753 -43373909 + (TG)n Simple_repeat Simple_repeat 2 48 0 231 33 0 0 chr4 140914753 140914777 -43373885 + (TA)n Simple_repeat Simple_repeat 2 25 0 2477 50 0 10 chr4 140914831 140915131 -43373531 + AluY SINE Alu 1 297 -14 227 133 61 71 chr4 140915270 140915368 -43373294 + A-rich Low_complexity Low_complexity 1 97 0 677 179 13 20 chr4 140915499 140915650 -43373012 - L1MB1 LINE L1 0 6168 6019 1002 226 38 89 chr4 140915650 140916044 -43372618 - MLT1A2 LTR MaLR 0 374 1 3868 174 7 56 chr4 140916045 140917382 -43371280 - L1MB1 LINE L1 -167 6022 4745 657 234 16 33 chr4 140917389 140917573 -43371089 - MER105 DNA DNA -6 198 18 531 281 67 30 chr4 140917676 140917840 -43370822 + MIR3 SINE MIR 21 190 -18 1197 229 66 33 chr4 140917974 140918401 -43370261 + MER113 DNA MER1_type? 8 448 -73 25 31 0 0 chr4 140918401 140918433 -43370229 + AT_rich Low_complexity Low_complexity 1 32 0 397 283 80 27 chr4 140918490 140918677 -43369985 + MIR SINE MIR 20 216 -46 5644 199 41 8 chr4 140918996 140920923 -43367739 - L1MC1 LINE L1 -9 6324 4336 469 211 42 11 chr4 140920926 140921021 -43367641 - Tigger7 DNA MER2_type -3 2484 2387 1438 215 15 0 chr4 140921026 140921286 -43367376 - Tigger7 DNA MER2_type -2223 264 1 3197 241 37 20 chr4 140921296 140922271 -43366391 - L1MC1 LINE L1 -1819 4327 3337 1663 187 10 24 chr4 140922272 140922566 -43366096 - AluJo SINE Alu -20 292 3 21 0 0 0 chr4 140923700 140923721 -43364941 + AT_rich Low_complexity Low_complexity 1 21 0 301 299 104 12 chr4 140923729 140923893 -43364769 - L1ME LINE L1 -297 5824 5646 1012 191 146 57 chr4 140924005 140924340 -43364322 - MLT1A1 LTR MaLR 0 365 1 226 283 111 30 chr4 140924363 140924462 -43364200 - MIR SINE MIR -112 150 44 278 162 40 30 chr4 140924665 140924764 -43363898 + (TTAAA)n Simple_repeat Simple_repeat 2 101 0 696 175 26 0 chr4 140925762 140925876 -43362786 + FLAM_C SINE Alu 1 117 -16 824 306 38 35 chr4 140927000 140927340 -43361322 - LTR16B LTR ERVL 0 464 124 569 257 40 13 chr4 140927545 140927697 -43360965 - MER117 DNA MER1_type -41 156 1 202 125 42 0 chr4 140927865 140927913 -43360749 + (TA)n Simple_repeat Simple_repeat 1 50 0 1404 104 50 268 chr4 140927913 140928547 -43360115 + Tigger3b DNA MER2_type 1 540 -691 1042 191 0 0 chr4 140928548 140928721 -43359941 - FAM SINE Alu -11 174 2 4046 125 40 6 chr4 140928722 140929400 -43359262 + Tigger3b DNA MER2_type 532 1232 0 728 221 0 100 chr4 140931035 140931225 -43357437 + MER45A DNA AcHobo 3 173 -5 2218 112 3 0 chr4 140931527 140931821 -43356841 - AluSp SINE Alu -18 295 1 285 98 0 0 chr4 140933582 140933623 -43355039 + (A)n Simple_repeat Simple_repeat 1 41 0 2660 197 38 24 chr4 140933996 140934550 -43354112 + MER68 LTR ERV1 1 562 0 210 178 0 22 chr4 140937017 140937062 -43351600 + A-rich Low_complexity Low_complexity 5 48 0 21 71 0 0 chr4 140937213 140937255 -43351407 + AT_rich Low_complexity Low_complexity 1 42 0 24360 142 15 19 chr4 140938358 140944763 -43343899 + L1PA8A LINE L1 1 6441 -5 288 343 118 32 chr4 140945123 140945587 -43343075 - L2 LINE L2 -680 2634 2131 2242 229 44 16 chr4 140945587 140946350 -43342312 + L1MCa LINE L1 963 1835 -4591 6758 32 0 0 chr4 140946359 140947165 -43341497 + L1P LINE L1 3431 4236 -1910 1669 230 121 9 chr4 140947160 140947827 -43340835 + L1MCa LINE L1 1822 2603 -3823 * 2291 186 9 15 chr4 140947827 140948294 -43340368 + L1MB5 LINE L1 5702 6165 -9 1669 230 121 9 chr4 140948294 140948662 -43340000 + L1MCa LINE L1 2603 2928 -3498 931 263 30 4 chr4 140948661 140948927 -43339735 + L1MCa LINE L1 4266 4538 -1888 * 1293 211 41 9 chr4 140948921 140949238 -43339424 + L1MC3 LINE L1 7458 7784 -1 570 285 20 0 chr4 140949496 140949647 -43339015 + MIR SINE MIR 92 245 -17 189 0 0 0 chr4 140949647 140949668 -43338994 + (CAT)n Simple_repeat Simple_repeat 3 23 0 209 171 0 0 chr4 140950205 140950240 -43338422 + MIR3 SINE MIR 165 199 -9 4179 204 41 10 chr4 140950394 140951179 -43337483 + MER21B LTR ERV1 1 809 -54 225 154 0 0 chr4 140951351 140951390 -43337272 + (TA)n Simple_repeat Simple_repeat 1 39 0 198 380 100 9 chr4 140951448 140951677 -43336985 + L3b LINE CR1 1278 1527 -56 1216 214 23 62 chr4 140951680 140952067 -43336595 + MER21B-int LTR ERV1 281 652 -4471 368 371 79 38 chr4 140952116 140952383 -43336279 + HERVE LTR ERV1 402 679 -6079 250 298 21 21 chr4 140953033 140953127 -43335535 + HERVE LTR ERV1 1335 1428 -5373 253 277 68 100 chr4 140954371 140954681 -43333981 + HERVE LTR ERV1 2779 3078 -4735 43186 48 1 3 chr4 140956569 140962732 -43325930 + L1PA4 LINE L1 2 6153 -2 333 0 0 0 chr4 140963635 140963672 -43324990 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 2064 115 7 0 chr4 140963676 140963955 -43324707 - AluSp SINE Alu -32 281 1 1902 138 65 14 chr4 140964261 140964617 -43324045 + THE1C LTR MaLR 1 374 -1 411 318 13 13 chr4 140964640 140964791 -43323871 + HERVE LTR ERV1 4266 4416 -538 401 252 35 17 chr4 140965144 140965259 -43323403 + HERVE LTR ERV1 5007 5123 0 2337 160 47 53 chr4 140965259 140965729 -43322933 + LTR24 LTR ERV1 1 467 0 556 292 85 74 chr4 140965975 140966365 -43322297 - L2 LINE L2 0 3313 2920 * 1614 284 174 21 chr4 140966359 140967157 -43321505 - L2 LINE L2 -568 2746 1827 269 349 8 40 chr4 140967760 140967886 -43320776 - L2 LINE L2 -10 3262 3141 698 248 86 53 chr4 140968724 140969156 -43319506 - LTR37B LTR ERV1 -5 463 18 928 264 84 93 chr4 140969221 140969869 -43318793 - MER31-int LTR ERV1 -840 4096 3455 5563 123 21 31 chr4 140969869 140970779 -43317883 + MER4D LTR ERV1 1 901 -2 928 264 84 93 chr4 140970779 140970892 -43317770 - MER31-int LTR ERV1 -1481 3455 3342 3284 138 104 20 chr4 140971215 140971858 -43316804 + LTR34 LTR ERV1 1 697 -2 986 169 28 0 chr4 140973608 140973785 -43314877 - MER105 DNA DNA -2 202 21 2008 190 59 14 chr4 140973878 140973974 -43314688 - MER74C LTR ERVL -16 444 354 2876 127 2 2 chr4 140973974 140974399 -43314263 + MER61B LTR ERV1 1 425 0 2008 190 59 14 chr4 140974399 140974723 -43313939 - MER74C LTR ERVL -106 354 5 1624 208 13 40 chr4 140974901 140975281 -43313381 - MLT1A2 LTR MaLR -4 370 1 246 167 56 111 chr4 140975346 140975368 -43313294 + L2 LINE L2 1910 1932 -1382 2281 74 0 83 chr4 140975368 140975707 -43312955 - AluY SINE Alu 0 311 1 246 167 56 111 chr4 140975707 140975756 -43312906 + L2 LINE L2 1932 1977 -1337 180 0 0 0 chr4 140975870 140975890 -43312772 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2158 113 3 0 chr4 140975972 140976263 -43312399 - AluSg SINE Alu -5 305 14 1444 251 38 53 chr4 140976288 140976871 -43311791 + MER68 LTR ERV1 1 535 -27 1064 210 56 68 chr4 140977103 140977499 -43311163 - LTR37B LTR ERV1 -77 391 1 1357 186 83 51 chr4 140977907 140977969 -43310693 + MLT1A1 LTR MaLR 5 64 -301 4578 168 49 58 chr4 140977969 140979050 -43309612 + MER11C LTR ERVK 1 1071 0 1357 186 83 51 chr4 140979050 140979337 -43309325 + MLT1A1 LTR MaLR 64 365 0 401 54 18 0 chr4 140981034 140981090 -43307572 + (GGGAA)n Simple_repeat Simple_repeat 3 59 0 1567 178 52 9 chr4 140981395 140981721 -43306941 - L1MB1 LINE L1 -1 6167 5828 2989 148 38 41 chr4 140981721 140982029 -43306633 + L1M3 LINE L1 4989 5297 -871 345 47 0 0 chr4 140982029 140982072 -43306590 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2989 148 38 41 chr4 140982072 140982528 -43306134 + L1M3 LINE L1 5297 5742 -426 1214 245 65 16 chr4 140982528 140982911 -43305751 - MER93a LTR ERV1 0 402 1 2989 148 38 41 chr4 140982911 140982994 -43305668 + L1M3 LINE L1 5742 5824 -344 6270 220 80 18 chr4 140983251 140984645 -43304017 + L1MC/D LINE L1 1 1625 -4915 1960 142 189 3 chr4 140984645 140985026 -43303636 + LTR47A LTR ERVL 1 452 0 6270 220 80 18 chr4 140985026 140985325 -43303337 + L1MC/D LINE L1 1625 1904 -4636 838 155 53 24 chr4 140985336 140985543 -43303119 + L1MC/D LINE L1 2358 2570 -3970 691 276 111 28 chr4 140985563 140985676 -43302986 + L1MC/D LINE L1 4601 4703 -1837 8894 108 19 2 chr4 140985676 140986939 -43301723 + HSMAR1 DNA Mariner 3 1287 0 691 276 111 28 chr4 140986939 140987429 -43301233 + L1MC/D LINE L1 4703 5254 -1286 568 182 91 14 chr4 140987429 140987572 -43301090 - L1MC2 LINE L1 -10 6334 6181 * 4594 242 40 20 chr4 140987567 140987600 -43301062 - L1PBb LINE L1 -2427 3776 3745 2268 103 3 6 chr4 140987600 140987911 -43300751 - AluSg SINE Alu 0 310 1 4594 242 40 20 chr4 140987911 140990821 -43297841 - L1PBb LINE L1 -2458 3745 690 729 176 30 12 chr4 140990867 140991032 -43297630 - L1M4 LINE L1 -1239 4907 4740 1057 233 78 41 chr4 140991041 140991728 -43296934 + L1MC/D LINE L1 5251 5964 -748 3300 140 30 18 chr4 140991731 140992274 -43296388 - Tigger1 DNA MER2_type -1853 565 17 3321 146 77 23 chr4 140992347 140993010 -43295652 + LTR34 LTR ERV1 1 699 0 21 0 0 0 chr4 140993943 140993964 -43294698 + AT_rich Low_complexity Low_complexity 1 21 0 1337 194 28 4 chr4 140994033 140994280 -43294382 - MER50 LTR ERV1 -23 711 459 1419 185 196 16 chr4 140994280 140994643 -43294019 - MSTA LTR MaLR 0 428 1 9344 136 14 40 chr4 140994643 140996264 -43292398 - THE1C-int LTR MaLR 0 1580 3 1606 182 49 30 chr4 140996266 140996634 -43292028 - THE1C LTR MaLR 0 375 1 * 2566 137 12 68 chr4 140996634 140997125 -43291537 - MER50 LTR ERV1 -271 463 1 313 365 90 11 chr4 140997149 140997327 -43291335 + HAL1 LINE L1 1414 1605 -902 314 237 135 39 chr4 140998264 140998420 -43290242 + L1MDa LINE L1 2439 2609 -3931 2518 215 54 67 chr4 140998569 140999272 -43289390 + LTR8A LTR ERV1 34 727 0 332 271 83 80 chr4 140999325 140999376 -43289286 + L1MDa LINE L1 2823 2872 -3668 375 23 0 0 chr4 140999376 140999420 -43289242 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 2099 117 3 0 chr4 140999423 140999705 -43288957 - AluSx SINE Alu -29 283 1 332 271 83 80 chr4 140999705 141000273 -43288389 + L1MDa LINE L1 2873 3448 -3092 42611 34 21 2 chr4 141000296 141006328 -43282334 - L1PA2 LINE L1 -1 6154 2 225 0 0 0 chr4 141007232 141007257 -43281405 + (TG)n Simple_repeat Simple_repeat 2 26 0 365 313 23 15 chr4 141007423 141007554 -43281108 - MER5A DNA MER1_type 0 189 58 469 231 17 75 chr4 141007763 141007936 -43280726 + MIR SINE MIR 100 262 0 190 310 70 70 chr4 141007938 141007967 -43280695 - L2 LINE L2 -5 3267 3239 1251 244 125 36 chr4 141007967 141008471 -43280191 + MLT1H LTR MaLR 1 549 0 190 310 70 70 chr4 141008471 141008541 -43280121 - L2 LINE L2 -32 3240 3168 678 294 114 75 chr4 141008629 141008704 -43279958 - L2 LINE L2 -1 3312 3241 2178 98 152 13 chr4 141008704 141009080 -43279582 + MSTA LTR MaLR 1 428 0 678 294 114 75 chr4 141009080 141009442 -43279220 - L2 LINE L2 -72 3241 2858 236 341 87 29 chr4 141009484 141009981 -43278681 - L2 LINE L2 -225 3047 2564 189 265 24 72 chr4 141010128 141010211 -43278451 - L2 LINE L2 0 3313 3235 561 301 67 10 chr4 141010304 141010513 -43278149 - MIR SINE MIR -19 243 23 855 276 91 46 chr4 141010707 141011138 -43277524 + LTR33 LTR ERVL 1 450 -71 3811 207 34 6 chr4 141011203 141012030 -43276632 - L1MB8 LINE L1 -5 6173 5324 376 289 103 20 chr4 141012546 141012750 -43275912 + MIR SINE MIR 32 252 -10 22 35 0 0 chr4 141012909 141012938 -43275724 + AT_rich Low_complexity Low_complexity 1 29 0 318 259 24 12 chr4 141014045 141014130 -43274532 + L2 LINE L2 3223 3308 -5 1989 142 129 3 chr4 141014142 141014522 -43274140 - MSTA LTR MaLR 0 428 1 270 185 19 56 chr4 141015157 141015265 -43273397 + (TTAG)n Simple_repeat Simple_repeat 2 105 0 243 158 0 0 chr4 141015451 141015489 -43273173 - MER4A LTR ERV1 0 664 627 25 0 0 0 chr4 141015489 141015514 -43273148 + AT_rich Low_complexity Low_complexity 1 25 0 2002 104 10 28 chr4 141015514 141015802 -43272860 - AluSp SINE Alu -30 283 1 1625 120 168 88 chr4 141015802 141016153 -43272509 - MER4A LTR ERV1 -23 641 263 509 114 102 0 chr4 141016160 141016248 -43272414 - MER4A LTR ERV1 -567 97 1 270 0 0 0 chr4 141016375 141016405 -43272257 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 412 308 56 56 chr4 141016424 141017100 -43271562 - L1MB8 LINE L1 -1160 4986 4311 30 27 0 0 chr4 141017381 141017418 -43271244 + AT_rich Low_complexity Low_complexity 1 37 0 1801 174 7 19 chr4 141017441 141017751 -43270911 - AluSx SINE Alu -1 311 6 666 308 38 10 chr4 141017787 141018233 -43270429 - L1MB8 LINE L1 -2168 3978 3511 2346 73 0 25 chr4 141018259 141018575 -43270087 - AluY SINE Alu -3 308 1 303 232 126 40 chr4 141018684 141018835 -43269827 - L1MB8 LINE L1 -2952 3194 3031 529 303 7 7 chr4 141019048 141019203 -43269459 - MER74C LTR ERVL -305 155 1 1085 227 74 48 chr4 141019386 141019883 -43268779 - MLT2D LTR ERVL 0 520 1 23 68 0 0 chr4 141019975 141020019 -43268643 + AT_rich Low_complexity Low_complexity 1 44 0 29 47 0 0 chr4 141020491 141020534 -43268128 + AT_rich Low_complexity Low_complexity 1 43 0 218 266 0 9 chr4 141020609 141020722 -43267940 + (TG)n Simple_repeat Simple_repeat 1 112 0 2269 163 28 5 chr4 141021283 141021681 -43266981 + MSTB LTR MaLR 1 407 -19 477 289 54 6 chr4 141021978 141022144 -43266518 + MIR SINE MIR 11 184 -78 562 221 166 6 chr4 141023108 141023271 -43265391 + MER5A DNA MER1_type 1 189 0 819 175 40 11 chr4 141023279 141023456 -43265206 - L1MC1 LINE L1 -168 6165 5984 1985 151 13 0 chr4 141024508 141024819 -43263843 - THE1B LTR MaLR -49 315 1 323 312 16 16 chr4 141025157 141025282 -43263380 + L1MC4 LINE L1 6579 6703 -1339 3135 135 31 53 chr4 141025350 141025731 -43262931 + LTR49 LTR ERV1 1 366 -229 1865 174 72 39 chr4 141025731 141026145 -43262517 - MSTA LTR MaLR 0 428 1 3135 135 31 53 chr4 141026145 141026371 -43262291 + LTR49 LTR ERV1 366 595 0 436 269 119 22 chr4 141027042 141027176 -43261486 - MIR SINE MIR -113 149 3 183 296 37 12 chr4 141028656 141028737 -43259925 + L2 LINE L2 3231 3313 0 2056 121 7 0 chr4 141029087 141029376 -43259286 - AluSg SINE Alu -17 293 3 370 276 167 32 chr4 141029654 141029810 -43258852 + MER5B DNA MER1_type 2 178 0 24 0 0 0 chr4 141030731 141030755 -43257907 + AT_rich Low_complexity Low_complexity 1 24 0 1054 229 29 60 chr4 141031710 141032094 -43256568 + MLT1A2 LTR MaLR 1 372 -2 944 253 152 58 chr4 141032167 141032629 -43256033 + MLT1D LTR MaLR 1 505 0 36 0 0 0 chr4 141033153 141033189 -43255473 + AT_rich Low_complexity Low_complexity 1 36 0 1845 176 0 3 chr4 141033200 141033506 -43255156 + AluJb SINE Alu 1 305 -7 26 30 0 0 chr4 141034017 141034050 -43254612 + AT_rich Low_complexity Low_complexity 1 33 0 312 314 155 25 chr4 141035568 141035813 -43252849 + L1MC/D LINE L1 5310 5586 -2222 201 162 0 0 chr4 141036602 141036639 -43252023 + (TA)n Simple_repeat Simple_repeat 1 37 0 217 357 87 0 chr4 141036932 141037058 -43251604 - MIR3 SINE MIR -34 174 38 220 196 0 0 chr4 141037477 141037523 -43251139 + MIR SINE MIR 181 226 -36 224 349 24 24 chr4 141037648 141037731 -43250931 + L2 LINE L2 3160 3242 -30 237 132 0 0 chr4 141038221 141038259 -43250403 + (T)n Simple_repeat Simple_repeat 1 38 0 2448 164 70 36 chr4 141038412 141038911 -43249751 + MER41C LTR ERV1 1 516 -38 1675 65 0 69 chr4 141038967 141039214 -43249448 + AluY SINE Alu 1 230 -81 2059 101 15 58 chr4 141040561 141040888 -43247774 - AluSq SINE Alu 0 313 1 1019 148 225 30 chr4 141040987 141041258 -43247404 - MER33 DNA MER1_type 0 324 1 266 354 71 8 chr4 141041265 141041392 -43247270 + MIR SINE MIR 16 150 -112 226 60 60 120 chr4 141042444 141042494 -43246168 - L1M1 LINE L1 -600 5704 5658 2965 103 38 55 chr4 141042493 141042832 -43245830 + L1MA2 LINE L1 5788 6117 -187 2022 126 0 7 chr4 141042832 141043137 -43245525 - AluSx SINE Alu 0 303 1 2965 103 38 55 chr4 141043137 141043322 -43245340 + L1MA2 LINE L1 6117 6304 0 298 291 194 0 chr4 141043407 141043541 -43245121 - MIR3 SINE MIR -2 206 47 1658 238 14 6 chr4 141044964 141045326 -43243336 - MLT1A1 LTR MaLR 0 365 1 562 296 47 86 chr4 141045382 141045849 -43242813 + MLT1J2 LTR MaLR 1 449 -1 23 33 0 0 chr4 141046261 141046291 -43242371 + AT_rich Low_complexity Low_complexity 1 30 0 4048 156 17 38 chr4 141046892 141046936 -43241726 - L1MA9 LINE L1 0 6312 6269 2218 108 0 10 chr4 141046936 141047232 -43241430 + AluSq SINE Alu 1 293 -20 4048 156 17 38 chr4 141047232 141048010 -43240652 - L1MA9 LINE L1 -43 6269 5507 2401 63 10 3 chr4 141048934 141049236 -43239426 - AluY SINE Alu -7 304 1 1872 75 115 11 chr4 141049661 141049940 -43238722 - AluSg1 SINE Alu -1 308 1 218 195 12 85 chr4 141051111 141051149 -43237513 + (TATATG)n Simple_repeat Simple_repeat 6 36 -45 2061 169 44 12 chr4 141051149 141051580 -43237082 - MER65A LTR ERV1 0 445 1 218 195 12 85 chr4 141051580 141051623 -43237039 + (TATATG)n Simple_repeat Simple_repeat 36 81 0 237 210 10 20 chr4 141051633 141051733 -43236929 + (TA)n Simple_repeat Simple_repeat 1 99 0 1823 173 13 0 chr4 141051883 141052183 -43236479 + AluJo SINE Alu 1 304 -8 31 92 0 0 chr4 141052478 141052565 -43236097 + AT_rich Low_complexity Low_complexity 1 87 0 1786 152 73 0 chr4 141053445 141053734 -43234928 - AluSg SINE Alu 0 310 1 202 118 29 0 chr4 141054486 141054520 -43234142 + (CA)n Simple_repeat Simple_repeat 2 36 0 350 237 15 30 chr4 141054554 141054685 -43233977 - HAL1 LINE L1 -89 2418 2290 887 259 107 61 chr4 141055012 141055507 -43233155 - HAL1 LINE L1 -742 1765 1248 302 362 43 21 chr4 141055721 141055862 -43232800 - MIR3 SINE MIR -46 162 19 21 36 0 0 chr4 141056139 141056167 -43232495 + AT_rich Low_complexity Low_complexity 1 28 0 281 355 121 0 chr4 141056286 141056452 -43232210 + MIR SINE MIR 58 243 -19 229 242 16 0 chr4 141056868 141056930 -43231732 + (TTTA)n Simple_repeat Simple_repeat 3 65 0 518 200 11 0 chr4 141057071 141057166 -43231496 - MER33 DNA MER1_type -228 96 1 185 284 0 74 chr4 141057184 141057265 -43231397 + L2 LINE L2 3239 3313 0 262 225 9 108 chr4 141057315 141057389 -43231273 - MLT1K LTR MaLR -1 587 526 2431 90 0 3 chr4 141057389 141057700 -43230962 + AluSg SINE Alu 1 310 0 262 225 9 108 chr4 141057700 141057736 -43230926 - MLT1K LTR MaLR -62 526 488 677 255 20 25 chr4 141057950 141058150 -43230512 - MLT1I LTR MaLR -210 199 1 271 366 82 0 chr4 141058155 141058289 -43230373 - MLT1K LTR MaLR -195 393 249 856 147 93 0 chr4 141058318 141058468 -43230194 - MLT1D LTR MaLR -5 500 337 295 233 23 35 chr4 141058479 141058565 -43230097 + MLT1D LTR MaLR 12 96 -409 2401 169 34 14 chr4 141058565 141058655 -43230007 - L1P4 LINE L1 -462 5704 5617 2321 161 41 14 chr4 141058655 141059072 -43229590 - MSTA LTR MaLR 0 428 1 2401 169 34 14 chr4 141059072 141059695 -43228967 - L1P4 LINE L1 -549 5617 4977 592 81 0 0 chr4 141059695 141059782 -43228880 - L1MA2 LINE L1 -102 6202 6116 2159 126 0 0 chr4 141059782 141060118 -43228544 + AluSq SINE Alu 1 313 0 263 299 179 22 chr4 141060213 141060397 -43228265 + MIR SINE MIR 13 225 -37 2873 151 8 6 chr4 141061646 141062123 -43226539 - MER9 LTR ERVK 0 511 34 6790 125 7 3 chr4 141062130 141063481 -43225181 - HERVK9 LTR ERVK 0 8032 4658 5683 89 0 0 chr4 141063470 141064219 -43224443 - HERVK9 LTR ERVK -3543 2373 1625 * 4448 108 9 18 chr4 141064219 141064887 -43223775 - HERVK9 LTR ERVK -5254 662 1 2864 150 6 8 chr4 141064887 141065366 -43223296 - MER9 LTR ERVK 0 511 34 43 35 0 0 chr4 141065443 141065500 -43223162 + AT_rich Low_complexity Low_complexity 1 57 0 240 288 0 17 chr4 141065750 141065809 -43222853 - Tigger2 DNA MER2_type -10 2708 2651 969 113 0 0 chr4 141065817 141065967 -43222695 + (TA)n Simple_repeat Simple_repeat 2 151 0 2400 160 17 12 chr4 141065992 141066405 -43222257 + L1PA16 LINE L1 71 485 -6364 6470 163 145 9 chr4 141066588 141067857 -43220805 - Tigger2 DNA MER2_type -1277 1441 1 485 263 9 9 chr4 141068782 141068896 -43219766 + L1PA16 LINE L1 728 841 -6008 5909 206 11 25 chr4 141068897 141070041 -43218621 + L1PA16 LINE L1 747 1875 -4974 10573 174 72 20 chr4 141070046 141072335 -43216327 - L1PA13 LINE L1 -755 5391 2984 5119 95 24 1 chr4 141072324 141073062 -43215600 + L1PA13 LINE L1 5396 6150 -13 * 12037 211 23 27 chr4 141073215 141073341 -43215321 + L1PA16 LINE L1 2790 2915 -3954 405 86 0 0 chr4 141073341 141073399 -43215263 + (TA)n Simple_repeat Simple_repeat 1 58 0 12037 211 23 27 chr4 141073399 141074528 -43214134 + L1PA16 LINE L1 2915 4047 -2822 2183 185 39 2 chr4 141074528 141074939 -43213723 + MSTB LTR MaLR 1 426 0 12037 211 23 27 chr4 141074939 141075992 -43212670 + L1PA16 LINE L1 4047 5103 -1766 252 0 0 0 chr4 141075992 141076020 -43212642 + (CA)n Simple_repeat Simple_repeat 1 28 0 12037 211 23 27 chr4 141076020 141077800 -43210862 + L1PA16 LINE L1 5103 6867 -2 7439 154 7 9 chr4 141077868 141079083 -43209579 - Tigger2 DNA MER2_type -54 2664 1453 1125 103 0 0 chr4 141079199 141079345 -43209317 - AluY SINE Alu -163 148 3 1482 140 143 11 chr4 141079573 141079838 -43208824 - AluJo SINE Alu -2 300 1 232 291 106 15 chr4 141081538 141081737 -43206925 + L1MC4 LINE L1 7121 7337 -705 211 306 162 18 chr4 141081930 141082041 -43206621 - MIR SINE MIR -116 146 20 183 378 142 24 chr4 141082095 141082222 -43206440 + L3 LINE CR1 1435 1576 -1 210 365 52 10 chr4 141083388 141083484 -43205178 - MIR SINE MIR -155 107 8 291 260 0 0 chr4 141085280 141085353 -43203309 + MIR SINE MIR 146 218 -44 189 370 30 10 chr4 141085660 141085760 -43202902 + MIR SINE MIR 158 259 -3 198 0 0 0 chr4 141086193 141086215 -43202447 + (CA)n Simple_repeat Simple_repeat 1 22 0 407 290 38 15 chr4 141086748 141086879 -43201783 + L2 LINE L2 3180 3313 0 34487 111 12 11 chr4 141087437 141093571 -43195091 + L1PA6 LINE L1 13 6146 -8 2286 137 16 11 chr4 141093586 141093959 -43194703 - THE1C LTR MaLR 0 375 1 9961 125 20 31 chr4 141093959 141095556 -43193106 - THE1C-int LTR MaLR 0 1580 1 2509 128 5 8 chr4 141095556 141095932 -43192730 - THE1C LTR MaLR 0 375 1 256 146 206 0 chr4 141096499 141096568 -43192094 - AluSp SINE Alu -122 181 122 335 162 0 0 chr4 141096574 141096648 -43192014 - L1MA7 LINE L1 0 6291 6218 12024 164 28 20 chr4 141096649 141097511 -43191151 + Tigger1 DNA MER2_type 4 858 -1560 2179 110 7 0 chr4 141097511 141097803 -43190859 + AluY SINE Alu 1 294 -17 12024 164 28 20 chr4 141097803 141099118 -43189544 + Tigger1 DNA MER2_type 858 2198 -220 2337 124 3 9 chr4 141099118 141099465 -43189197 + MER57B LTR ERV1 85 429 -5 4053 147 19 12 chr4 141099469 141100135 -43188527 + MER57B-int LTR ERV1 1 671 -6866 * 4212 173 42 19 chr4 141100133 141101456 -43187206 + PABL_A-int LTR ERV1 288 2348 -5067 5057 142 88 45 chr4 141101464 141101923 -43186739 + PABL_A-int LTR ERV1 2042 2480 -2535 2117 112 33 10 chr4 141101923 141102228 -43186434 + AluSq SINE Alu 1 312 -1 5057 142 88 45 chr4 141102228 141103204 -43185458 + PABL_A-int LTR ERV1 2480 3206 -1809 11957 118 38 6 chr4 141103210 141104994 -43183668 + PABL_A-int LTR ERV1 5307 7148 -389 650 152 16 32 chr4 141104995 141105120 -43183542 + LTR54B LTR ERV1 9 131 -367 849 67 237 0 chr4 141105120 141105255 -43183407 + MER57-int LTR ERV1 7279 7445 -92 2195 261 72 3 chr4 141105285 141105886 -43182776 - L1M3b LINE L1 -5639 642 1 23 0 0 0 chr4 141106533 141106556 -43182106 + AT_rich Low_complexity Low_complexity 1 23 0 316 218 0 0 chr4 141106910 141106965 -43181697 + Tigger5 DNA MER2_type 1 55 -2268 * 326 219 0 0 chr4 141106934 141106998 -43181664 + Tigger5 DNA MER2_type 2251 2314 -9 471 209 12 0 chr4 141107022 141107108 -43181554 - Tigger5 DNA MER2_type -2235 88 2 402 198 23 12 chr4 141107120 141107206 -43181456 + Tigger5 DNA MER2_type 2237 2323 0 1476 178 142 49 chr4 141107895 141108132 -43180530 - L1MD3 LINE L1 -11 7984 7770 214 50 50 0 chr4 141108132 141108172 -43180490 + (TTTTA)n Simple_repeat Simple_repeat 4 45 0 2144 36 0 0 chr4 141108172 141108424 -43180238 - L1PA3 LINE L1 -13 6142 5891 1476 178 142 49 chr4 141108424 141108572 -43180090 - L1MD3 LINE L1 -224 7771 7562 7561 109 13 9 chr4 141108621 141114219 -43174443 - L1PA7 LINE L1 -9 6460 773 685 229 26 7 chr4 141114225 141114378 -43174284 - L1MC4a LINE L1 -424 7384 7229 457 246 108 80 chr4 141114383 141114748 -43173914 - L1MC4 LINE L1 -1307 6735 6346 22 0 0 0 chr4 141114893 141114915 -43173747 + AT_rich Low_complexity Low_complexity 1 22 0 1389 278 55 24 chr4 141115065 141116023 -43172639 - L1MCc LINE L1 -4891 1532 1042 788 210 93 31 chr4 141116026 141116332 -43172330 + MLT1A1 LTR MaLR 1 361 -4 6481 76 27 10 chr4 141118388 141119438 -43169224 - L1PA7 LINE L1 -5 6149 5103 4655 144 55 18 chr4 141119439 141120309 -43168353 - PABL_A-int LTR ERV1 -1919 3096 2195 1053 135 5 9 chr4 141120310 141120517 -43168145 - AluSq SINE Alu -24 289 2 502 292 134 50 chr4 141120535 141120974 -43167688 - MER97a DNA MER1_type? -418 476 1 836 255 38 8 chr4 141120974 141121209 -43167453 - L1ME LINE L1 -528 5642 5401 242 286 45 0 chr4 141121271 141121383 -43167279 - L1ME LINE L1 -856 5290 5174 1574 139 58 0 chr4 141121410 141121684 -43166978 - Tigger3b DNA MER2_type 0 1232 943 1968 101 26 0 chr4 141121698 141122006 -43166656 - L1P LINE L1 -761 5385 5070 * 2157 126 11 11 chr4 141121979 141122327 -43166335 + L1MB3 LINE L1 5818 6165 -18 4177 146 112 39 chr4 141122327 141122434 -43166228 - Tigger3b DNA MER2_type -2052 976 878 207 0 0 0 chr4 141122434 141122457 -43166205 + (TGAG)n Simple_repeat Simple_repeat 4 26 0 4177 146 112 39 chr4 141122457 141123258 -43165404 - Tigger3b DNA MER2_type -2150 878 1 282 299 0 9 chr4 141123301 141123408 -43165254 - L1ME LINE L1 -963 5183 5078 1807 284 108 14 chr4 141123719 141124754 -43163908 - L1ME LINE L1 -1426 4720 3589 229 194 69 0 chr4 141124779 141124851 -43163811 - L1MA10 LINE L1 -2 6332 6256 234 250 0 33 chr4 141124954 141125014 -43163648 + (CATATA)n Simple_repeat Simple_repeat 5 62 0 242 302 23 0 chr4 141125014 141125100 -43163562 - L1MA10 LINE L1 -78 6256 6169 * 493 200 58 78 chr4 141125067 141125272 -43163390 - L1ME2 LINE L1 -124 6040 5840 4518 119 23 120 chr4 141125352 141126982 -43161680 - L1PA13 LINE L1 -1 6162 4698 602 285 96 25 chr4 141127141 141127422 -43161240 - L1ME1 LINE L1 -100 6066 5766 * 5222 195 25 23 chr4 141127415 141129620 -43159042 - L1PA16 LINE L1 0 6166 3962 969 251 81 17 chr4 141129617 141129975 -43158687 - L1ME1 LINE L1 -907 5239 4859 * 19563 171 35 25 chr4 141130015 141131762 -43156900 - L1MA2 LINE L1 0 7723 5994 2039 99 48 3 chr4 141131762 141132055 -43156607 - AluSg SINE Alu -4 306 1 19563 171 35 25 chr4 141132055 141133822 -43154840 - L1MA2 LINE L1 -1729 5994 4245 195 69 0 0 chr4 141133822 141133851 -43154811 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 19563 171 35 25 chr4 141133851 141136516 -43152146 - L1MA2 LINE L1 -3478 4245 1450 1795 123 19 4 chr4 141136516 141136784 -43151878 + AluSx SINE Alu 1 272 -40 19563 171 35 25 chr4 141136784 141138236 -43150426 - L1MA2 LINE L1 -6273 1450 13 1586 229 133 33 chr4 141138238 141138906 -43149756 - L1ME1 LINE L1 -1819 4327 3593 190 360 93 0 chr4 141139532 141139607 -43149055 + L2 LINE L2 2104 2185 -1129 1915 143 77 37 chr4 141140054 141140404 -43148258 - THE1B LTR MaLR 0 364 1 281 256 113 8 chr4 141140423 141140556 -43148106 + MLT1K LTR MaLR 441 587 -1 1203 318 43 38 chr4 141140575 141141230 -43147432 + L2 LINE L2 2219 2876 -438 397 324 80 35 chr4 141141258 141141570 -43147092 + L2 LINE L2 2988 3313 0 415 322 53 24 chr4 141142895 141143103 -43145559 - MIR SINE MIR -41 221 8 1664 111 118 15 chr4 141144462 141144724 -43143938 - AluSg SINE Alu -19 291 3 23 54 0 0 chr4 141144964 141145001 -43143661 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr4 141145211 141145233 -43143429 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 141146703 141146733 -43141929 + AT_rich Low_complexity Low_complexity 1 30 0 1630 240 38 14 chr4 141146914 141147335 -43141327 + MER63B DNA MER1_type 6 436 0 1964 112 4 0 chr4 141148290 141148550 -43140112 - AluSq SINE Alu -31 282 22 416 323 103 23 chr4 141153615 141153925 -43134737 - L2 LINE L2 0 3313 2979 762 286 45 14 chr4 141154440 141154660 -43134002 + MIR SINE MIR 21 247 -15 1917 154 13 7 chr4 141155475 141155773 -43132889 - AluJb SINE Alu -12 300 1 782 176 75 37 chr4 141156009 141156196 -43132466 + MER20 DNA MER1_type 1 194 -25 1154 135 151 28 chr4 141157731 141157983 -43130679 - L1PA16 LINE L1 0 6166 5884 264 350 104 6 chr4 141159660 141159823 -43128839 - MIR3 SINE MIR -1 207 29 286 309 143 62 chr4 141160271 141160578 -43128084 + L3 LINE CR1 962 1293 -284 235 353 35 9 chr4 141160822 141160938 -43127724 + L3 LINE CR1 1456 1574 -3 183 340 67 33 chr4 141161513 141161663 -43126999 + L3b LINE CR1 1112 1266 -317 255 231 56 9 chr4 141161879 141161987 -43126675 + GA-rich Low_complexity Low_complexity 2 114 0 237 268 189 8 chr4 141162995 141163122 -43125540 + MIR SINE MIR 100 249 -13 2299 91 0 0 chr4 141163143 141163428 -43125234 + AluSq SINE Alu 2 286 -27 417 252 51 70 chr4 141163665 141163879 -43124783 + L2 LINE L2 2303 2512 -802 465 84 0 0 chr4 141164313 141164384 -43124278 + (TATG)n Simple_repeat Simple_repeat 2 72 0 2247 100 0 0 chr4 141164384 141164665 -43123997 - AluSg SINE Alu -27 283 3 292 294 84 99 chr4 141165601 141165924 -43122738 - L2 LINE L2 -551 2763 2446 560 317 92 19 chr4 141167561 141167823 -43120839 - L2 LINE L2 -5 3308 3028 452 171 0 34 chr4 141169264 141169352 -43119310 - MIR3 SINE MIR -15 193 109 540 312 77 21 chr4 141169814 141170048 -43118614 - MIR SINE MIR -13 249 3 199 368 44 9 chr4 141172399 141172513 -43116149 + MIR SINE MIR 35 152 -110 364 246 2 51 chr4 141172587 141172698 -43115964 + MER2 DNA MER2_type 4 108 -131 221 275 231 0 chr4 141174710 141174801 -43113861 - L2 LINE L2 -37 3276 3165 209 262 0 0 chr4 141176805 141176847 -43111815 + (TG)n Simple_repeat Simple_repeat 2 43 0 3082 133 73 8 chr4 141177558 141178053 -43110609 - MER1A DNA MER1_type 0 527 1 207 331 72 61 chr4 141181221 141181402 -43107260 + L2 LINE L2 3129 3311 -2 212 288 27 0 chr4 141182377 141182450 -43106212 + MIR SINE MIR 60 134 -128 274 258 0 0 chr4 141182576 141182638 -43106024 + MIR SINE MIR 180 241 -21 936 290 67 10 chr4 141182845 141183159 -43105503 + L3 LINE CR1 1223 1554 -23 25 0 0 0 chr4 141183414 141183439 -43105223 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 141183553 141183575 -43105087 + AT_rich Low_complexity Low_complexity 1 22 0 239 197 0 0 chr4 141183662 141183723 -43104939 - L1MC4 LINE L1 -1339 6703 6643 231 133 96 24 chr4 141184016 141184099 -43104563 + (CACCAT)n Simple_repeat Simple_repeat 1 89 0 2062 119 0 11 chr4 141184227 141184512 -43104150 + AluSx SINE Alu 1 282 -30 420 20 0 0 chr4 141184519 141184568 -43104094 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 21 57 0 0 chr4 141185407 141185442 -43103220 + AT_rich Low_complexity Low_complexity 1 35 0 240 35 0 0 chr4 141187014 141187043 -43101619 + (CA)n Simple_repeat Simple_repeat 2 30 0 1202 193 80 0 chr4 141187320 141187584 -43101078 + L1MB8 LINE L1 5842 6126 -52 1077 214 70 0 chr4 141187584 141187785 -43100877 - MER21B LTR ERV1 -370 493 279 226 233 33 33 chr4 141187779 141187839 -43100823 - MER39 LTR ERV1 -314 393 334 * 244 99 0 155 chr4 141188063 141188134 -43100528 + L1MB8 LINE L1 6118 6177 -1 924 192 62 0 chr4 141188159 141188336 -43100326 - MER5A DNA MER1_type -1 188 1 39030 68 3 3 chr4 141188338 141194265 -43094397 + L1PA5 LINE L1 227 6154 0 269 287 32 21 chr4 141194475 141194569 -43094093 - MIR SINE MIR -10 252 158 276 227 219 34 chr4 141194665 141194784 -43093878 - MIR SINE MIR -120 142 2 482 305 124 37 chr4 141196065 141196468 -43092194 + L1ME LINE L1 5367 5804 -366 223 298 36 12 chr4 141196656 141196740 -43091922 + L2 LINE L2 2969 3054 -218 189 337 22 33 chr4 141196816 141196908 -43091754 + MIR SINE MIR 171 261 -1 309 351 29 29 chr4 141197506 141197680 -43090982 - MIR SINE MIR -66 196 23 743 22 0 0 chr4 141198436 141198526 -43090136 + L1PA4 LINE L1 6063 6152 -3 423 237 22 74 chr4 141200237 141200372 -43088290 - L2 LINE L2 -4 3309 3182 999 150 0 0 chr4 141200935 141201088 -43087574 - L1PB4 LINE L1 -13 6143 5991 224 250 100 0 chr4 141201100 141201160 -43087502 + MER5B DNA MER1_type 113 178 0 307 239 87 51 chr4 141201180 141201318 -43087344 + L1M4 LINE L1 15 157 -6385 739 221 21 26 chr4 141201754 141201944 -43086718 - MIR SINE MIR -5 257 69 24 32 0 0 chr4 141203501 141203532 -43085130 + AT_rich Low_complexity Low_complexity 1 31 0 1551 173 92 0 chr4 141204619 141204890 -43083772 + AluJb SINE Alu 1 296 -16 440 254 130 30 chr4 141204920 141205089 -43083573 - MIR SINE MIR -76 186 1 28 71 0 0 chr4 141205558 141205614 -43083048 + AT_rich Low_complexity Low_complexity 1 56 0 2110 114 10 0 chr4 141205887 141206193 -43082469 - AluSc SINE Alu 0 309 1 27 81 0 0 chr4 141206243 141206305 -43082357 + AT_rich Low_complexity Low_complexity 1 62 0 1480 190 0 33 chr4 141208129 141208429 -43080233 - AluJb SINE Alu -22 290 1 705 249 44 19 chr4 141208801 141209006 -43079656 - MER20 DNA MER1_type -6 213 4 209 286 0 0 chr4 141210271 141210320 -43078342 + (TG)n Simple_repeat Simple_repeat 2 50 0 798 263 4 31 chr4 141211076 141211212 -43077450 + L1MA9 LINE L1 6021 6159 -152 396 0 0 0 chr4 141211212 141211256 -43077406 + (CA)n Simple_repeat Simple_repeat 1 44 0 798 263 4 31 chr4 141211256 141211408 -43077254 + L1MA9 LINE L1 6159 6299 -12 267 252 145 15 chr4 141211454 141211585 -43077077 + MER112 DNA MER1_type 66 213 -47 231 270 122 13 chr4 141212527 141212729 -43075933 + L1ME LINE L1 5688 5907 -263 389 305 31 16 chr4 141213018 141213146 -43075516 + MIR SINE MIR 18 147 -61 444 298 30 88 chr4 141213961 141214060 -43074602 + MLT1K LTR MaLR 334 437 -151 2124 113 3 3 chr4 141214060 141214361 -43074301 - AluSx SINE Alu -7 305 5 444 298 30 88 chr4 141214361 141214523 -43074139 + MLT1K LTR MaLR 437 580 -8 1857 245 60 32 chr4 141214660 141215224 -43073438 + MLT1G LTR MaLR 11 590 0 201 301 248 9 chr4 141218642 141218755 -43069907 + MIR3 SINE MIR 21 160 -48 22 0 0 0 chr4 141218851 141218873 -43069789 + AT_rich Low_complexity Low_complexity 1 22 0 776 261 18 23 chr4 141218887 141218978 -43069684 + MER58A DNA MER1_type 4 94 -2326 1988 122 0 14 chr4 141218978 141219331 -43069331 - AluSq SINE Alu 0 313 1 776 261 18 23 chr4 141219331 141219457 -43069205 + MER58A DNA MER1_type 94 220 -4 1951 295 141 27 chr4 141219671 141220119 -43068543 - L2 LINE L2 -75 3238 2842 180 0 0 0 chr4 141220119 141220139 -43068523 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1951 295 141 27 chr4 141220139 141220974 -43067688 - L2 LINE L2 -471 2842 1810 350 201 19 15 chr4 141221723 141221817 -43066845 - MER5A DNA MER1_type -1 188 82 524 302 93 70 chr4 141221889 141222276 -43066386 + LTR33A LTR ERVL 2 397 -126 189 0 0 0 chr4 141224235 141224256 -43064406 + (T)n Simple_repeat Simple_repeat 1 21 0 229 383 48 48 chr4 141224637 141225010 -43063652 + L2 LINE L2 1648 2020 -1294 270 56 0 0 chr4 141225579 141225615 -43063047 + (CA)n Simple_repeat Simple_repeat 2 37 0 1159 238 72 6 chr4 141226442 141226762 -43061900 + MER2 DNA MER2_type 2 342 -2 1322 144 0 10 chr4 141228067 141228269 -43060393 - AluSg/x SINE Alu -26 286 87 695 195 117 7 chr4 141228459 141228613 -43060049 - MER5A DNA MER1_type -3 186 16 23 78 0 0 chr4 141228870 141228921 -43059741 + AT_rich Low_complexity Low_complexity 1 51 0 224 348 25 107 chr4 141231336 141231692 -43056970 + L2 LINE L2 2924 3250 -22 1230 216 107 40 chr4 141231842 141232189 -43056473 + MLT1A2 LTR MaLR 1 370 -4 239 318 78 47 chr4 141232320 141232449 -43056213 - MIR3 SINE MIR -72 136 4 2092 133 0 3 chr4 141233120 141233422 -43055240 - AluSq SINE Alu -12 301 1 2238 116 0 0 chr4 141233515 141233817 -43054845 - AluSx SINE Alu -9 303 2 25 31 0 0 chr4 141234743 141234775 -43053887 + AT_rich Low_complexity Low_complexity 1 32 0 309 255 83 7 chr4 141235580 141235604 -43053058 - L1MA10 LINE L1 -10 6324 6301 2863 221 53 20 chr4 141235604 141236622 -43052040 - L1ME1 LINE L1 -34 6132 5074 31929 60 6 2 chr4 141236628 141241172 -43047490 + L1P2 LINE L1 1180 5743 -411 4338 68 0 0 chr4 141241272 141241827 -43046835 + L1PA5 LINE L1 5585 6139 -15 310 253 0 74 chr4 141241827 141241922 -43046740 + L1MC4 LINE L1 6615 6702 -1340 2578 216 67 4 chr4 141241939 141242614 -43046048 - L1ME1 LINE L1 -1047 5099 4383 259 361 51 23 chr4 141242759 141242975 -43045687 - L1M4b LINE L1 -6626 233 12 996 193 90 13 chr4 141244708 141245009 -43043653 - MER33 DNA MER1_type 0 324 1 255 367 56 37 chr4 141245661 141245876 -43042786 + MIR SINE MIR 20 238 -24 479 363 83 55 chr4 141246929 141247918 -43040744 + L2 LINE L2 2244 3266 -6 22 0 0 0 chr4 141248197 141248219 -43040443 + AT_rich Low_complexity Low_complexity 1 22 0 273 154 0 0 chr4 141250221 141250273 -43038389 + L1MC4 LINE L1 6652 6703 -1339 408 40 0 0 chr4 141250373 141250423 -43038239 + (CA)n Simple_repeat Simple_repeat 2 51 0 2353 96 3 0 chr4 141253704 141254006 -43034656 + AluSp SINE Alu 1 303 -10 332 281 256 0 chr4 141254327 141254526 -43034136 + MIR SINE MIR 2 251 -11 2881 289 182 21 chr4 141254528 141256190 -43032472 + L2 LINE L2 1389 3312 -1 332 271 106 29 chr4 141256232 141256402 -43032260 - MIR3 SINE MIR -10 198 16 2087 99 0 4 chr4 141256582 141256855 -43031807 + AluSp SINE Alu 39 310 -3 611 338 66 34 chr4 141257354 141257674 -43030988 + MER102a DNA MER1_type 1 330 0 419 250 168 96 chr4 141257684 141257812 -43030850 - MER45C DNA AcHobo -635 946 829 2281 86 0 16 chr4 141257812 141258126 -43030536 - AluY SINE Alu 0 311 3 419 250 168 96 chr4 141258126 141258217 -43030445 - MER45C DNA AcHobo -752 829 711 979 216 9 31 chr4 141258289 141258511 -43030151 - MER45C DNA AcHobo -722 231 15 7742 23 0 0 chr4 141258919 141260578 -43028084 + L1PA3 LINE L1 4494 6152 -3 564 291 101 15 chr4 141260642 141260841 -43027821 + MIR SINE MIR 45 260 -2 206 250 0 17 chr4 141261165 141261225 -43027437 + L2 LINE L2 3255 3313 0 189 0 0 0 chr4 141261334 141261355 -43027307 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2070 121 7 0 chr4 141261358 141261638 -43027024 - AluSx SINE Alu -30 282 1 649 180 8 16 chr4 141261880 141262008 -43026654 - AluJb SINE Alu -185 127 1 842 329 146 55 chr4 141262070 141263409 -43025253 + L3 LINE CR1 114 1573 -4 869 155 63 155 chr4 141264470 141264786 -43023876 + L1MD3 LINE L1 6735 7021 -974 487 151 12 0 chr4 141264792 141264878 -43023784 + L1MA6 LINE L1 6135 6221 -79 311 247 0 0 chr4 141264905 141264978 -43023684 + MER34 LTR ERV1 22 94 -448 932 213 87 77 chr4 141265038 141265546 -43023116 + LTR48B LTR ERV1 75 639 -5 376 143 39 0 chr4 141265546 141265623 -43023039 + L1MA6 LINE L1 6221 6300 0 465 168 32 0 chr4 141265635 141265730 -43022932 + L1MD3 LINE L1 7006 7103 -892 342 0 0 0 chr4 141266260 141266298 -43022364 + (CA)n Simple_repeat Simple_repeat 2 39 0 218 189 0 0 chr4 141267241 141267278 -43021384 + (CCTA)n Simple_repeat Simple_repeat 2 38 0 997 186 10 10 chr4 141268452 141268646 -43020016 - L1MB3 LINE L1 -60 6123 5930 433 333 89 6 chr4 141268652 141268820 -43019842 + MER5A DNA MER1_type 7 188 -1 219 36 0 0 chr4 141270261 141270289 -43018373 + (TG)n Simple_repeat Simple_repeat 1 28 0 1573 148 13 4 chr4 141270304 141270541 -43018121 - AluJb SINE Alu -68 244 6 216 240 0 20 chr4 141271259 141271309 -43017353 + GA-rich Low_complexity Low_complexity 2 50 0 306 289 100 47 chr4 141271346 141271536 -43017126 - MIR SINE MIR -53 209 10 186 103 0 0 chr4 141271573 141271602 -43017060 + (CAAAAA)n Simple_repeat Simple_repeat 4 32 0 231 204 19 0 chr4 141273310 141273364 -43015298 + (CA)n Simple_repeat Simple_repeat 1 55 0 241 323 15 0 chr4 141273858 141273923 -43014739 - L2 LINE L2 -3 3269 3204 2517 48 7 7 chr4 141274093 141274402 -43014260 - AluY SINE Alu -1 310 2 937 188 18 6 chr4 141274618 141274788 -43013874 - AluJo SINE Alu -5 307 136 218 91 45 23 chr4 141275627 141275671 -43012991 + (CATTA)n Simple_repeat Simple_repeat 1 45 0 283 389 37 56 chr4 141276807 141276969 -43011693 - L2 LINE L2 0 3272 3114 246 136 0 0 chr4 141277040 141277084 -43011578 + (TA)n Simple_repeat Simple_repeat 2 45 0 1100 30 23 0 chr4 141277580 141277712 -43010950 - MER85 DNA T2_type -4 135 1 203 279 33 16 chr4 141280420 141280481 -43008181 + L2 LINE L2 3190 3251 -21 200 364 0 0 chr4 141280652 141280707 -43007955 + L2 LINE L2 3115 3169 -103 243 267 83 50 chr4 141281147 141281267 -43007395 - MIR SINE MIR -36 226 103 242 33 0 0 chr4 141282995 141283025 -43005637 - HSMAR1 DNA Mariner -1257 30 1 364 311 108 14 chr4 141283801 141283949 -43004713 - MIR3 SINE MIR -4 204 43 2680 162 115 47 chr4 141285138 141285798 -43002864 + MER44D DNA MER2_type 1 705 0 745 177 0 64 chr4 141286780 141286921 -43001741 - AluJo SINE Alu -176 136 5 190 358 146 25 chr4 141286922 141287402 -43001260 + L2 LINE L2 2037 2574 -740 1122 240 37 44 chr4 141287755 141288360 -43000302 - L1ME LINE L1 -508 5727 4966 6369 89 4 8 chr4 141288360 141289604 -42999058 + L1PA10 LINE L1 4926 6166 -2 1122 240 37 44 chr4 141289604 141289713 -42998949 - L1ME LINE L1 -1269 4966 4858 961 260 139 44 chr4 141289725 141290322 -42998340 - L1ME LINE L1 -4486 1910 1257 * 1935 284 48 11 chr4 141290317 141290979 -42997683 - L1ME LINE L1 -5495 901 215 375 238 123 0 chr4 141290989 141291111 -42997551 - L1ME LINE L1 -6223 173 37 410 236 30 138 chr4 141292546 141292749 -42995913 + MIR SINE MIR 82 262 0 366 309 65 77 chr4 141294252 141294498 -42994164 + MIR SINE MIR 20 262 0 409 272 173 0 chr4 141296249 141296411 -42992251 + MIR SINE MIR 57 246 -16 1374 192 11 38 chr4 141296665 141296952 -42991710 - AluJo SINE Alu -18 294 16 387 0 0 0 chr4 141298156 141298199 -42990463 + (TTA)n Simple_repeat Simple_repeat 3 45 0 1083 66 0 0 chr4 141298199 141298336 -42990326 - L1PA5 LINE L1 -18 6136 6000 621 0 0 0 chr4 141298336 141298406 -42990256 + L1P LINE L1 4567 4636 -1510 26 0 0 0 chr4 141299701 141299727 -42988935 + AT_rich Low_complexity Low_complexity 1 26 0 914 266 211 16 chr4 141299917 141300406 -42988256 + L2 LINE L2 2071 2654 -660 2016 139 3 3 chr4 141301232 141301534 -42987128 + AluSx SINE Alu 1 302 -10 546 272 0 23 chr4 141302151 141302324 -42986338 + L1MB8 LINE L1 6010 6178 0 432 269 62 51 chr4 141302525 141302782 -42985880 - MIR SINE MIR -2 260 1 26 0 0 0 chr4 141302873 141302899 -42985763 + AT_rich Low_complexity Low_complexity 1 26 0 225 0 0 0 chr4 141303689 141303714 -42984948 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 26 0 0 0 chr4 141303981 141304007 -42984655 + AT_rich Low_complexity Low_complexity 1 26 0 270 324 156 35 chr4 141304143 141304316 -42984346 + MIR3 SINE MIR 6 199 -9 2383 73 3 0 chr4 141304328 141304630 -42984032 + AluY SINE Alu 1 303 -8 23 33 0 0 chr4 141306156 141306186 -42982476 + AT_rich Low_complexity Low_complexity 1 30 0 278 349 33 3 chr4 141306669 141306833 -42981829 - L2 LINE L2 -53 3219 3009 273 167 0 0 chr4 141307432 141307486 -42981176 + L1MC4 LINE L1 6653 6706 -1336 2406 77 0 0 chr4 141307661 141307971 -42980691 + AluY SINE Alu 1 310 -1 488 264 53 19 chr4 141308003 141308211 -42980451 + L1MC4a LINE L1 5636 5850 -1958 885 275 39 0 chr4 141308263 141308492 -42980170 - MIR SINE MIR 0 262 25 189 74 0 0 chr4 141309560 141309587 -42979075 + (TG)n Simple_repeat Simple_repeat 2 28 0 207 69 0 0 chr4 141309587 141309636 -42979026 + (CA)n Simple_repeat Simple_repeat 1 78 0 207 69 0 0 chr4 141309636 141309665 -42978997 + (CA)n Simple_repeat Simple_repeat 2 30 0 1585 193 0 14 chr4 141309665 141309961 -42978701 - AluJb SINE Alu -20 292 1 300 354 38 13 chr4 141310010 141310168 -42978494 + L1ME4a LINE L1 5915 6076 -45 25 0 0 0 chr4 141310204 141310229 -42978433 + AT_rich Low_complexity Low_complexity 1 25 0 2320 106 0 0 chr4 141310272 141310583 -42978079 + AluY SINE Alu 1 311 0 200 139 0 0 chr4 141311284 141311320 -42977342 - MER5B DNA MER1_type -142 36 1 875 194 0 0 chr4 141311725 141311885 -42976777 + AluY SINE Alu 151 310 -1 200 139 0 0 chr4 141312585 141312621 -42976041 - MER5B DNA MER1_type -142 36 1 180 135 0 0 chr4 141313553 141313590 -42975072 + (TTTTTG)n Simple_repeat Simple_repeat 4 40 0 339 25 0 0 chr4 141314087 141314127 -42974535 + (TG)n Simple_repeat Simple_repeat 2 41 0 709 304 78 20 chr4 141314427 141314723 -42973939 + L1MDa LINE L1 27 339 -6201 452 244 0 113 chr4 141315017 141315246 -42973416 + L1MD2 LINE L1 6013 6215 -144 878 168 24 86 chr4 141315509 141315718 -42972944 + L1PA15 LINE L1 5970 6165 0 288 294 222 0 chr4 141318080 141318206 -42970456 + MIR SINE MIR 2 155 -107 973 290 79 9 chr4 141318438 141318480 -42970182 - MER69 DNA AcHobo -2160 366 328 2675 149 44 23 chr4 141318480 141319005 -42969657 + L1MA10 LINE L1 5798 6333 -1 973 290 79 9 chr4 141319005 141319303 -42969359 - MER69 DNA AcHobo -2198 328 2 282 358 138 18 chr4 141319583 141320041 -42968621 + L2 LINE L2 2138 2650 -664 2186 84 0 3 chr4 141320246 141320531 -42968131 + AluSq SINE Alu 24 307 -6 377 352 50 6 chr4 141321072 141321254 -42967408 - MIR SINE MIR -1 261 72 22 0 0 0 chr4 141321513 141321535 -42967127 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr4 141322578 141322605 -42966057 + AT_rich Low_complexity Low_complexity 1 27 0 206 219 0 0 chr4 141322718 141322759 -42965903 + (CA)n Simple_repeat Simple_repeat 2 42 0 1248 223 92 23 chr4 141322925 141323872 -42964790 - L1MD3 LINE L1 -187 7808 6616 22 35 0 0 chr4 141323947 141323976 -42964686 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr4 141325999 141326034 -42962628 + AT_rich Low_complexity Low_complexity 1 35 0 297 291 94 16 chr4 141326559 141326686 -42961976 - MIR SINE MIR -73 189 53 486 309 0 33 chr4 141326947 141327099 -42961563 + MIR SINE MIR 25 171 -91 26 0 0 0 chr4 141329301 141329327 -42959335 + AT_rich Low_complexity Low_complexity 1 26 0 2392 98 0 0 chr4 141329650 141329957 -42958705 + AluSx SINE Alu 1 307 -5 1077 214 98 46 chr4 141330420 141330789 -42957873 + MLT1C LTR MaLR 80 467 0 1426 225 86 50 chr4 141331770 141332152 -42956510 - MSTD LTR MaLR 0 396 1 3809 169 27 31 chr4 141332448 141333255 -42955407 - L1MA10 LINE L1 -3 6331 5528 22 35 0 0 chr4 141335467 141335496 -42953166 + AT_rich Low_complexity Low_complexity 1 29 0 434 310 160 10 chr4 141336113 141336313 -42952349 + MIR SINE MIR 6 235 -27 2732 7 0 0 chr4 141336317 141336618 -42952044 - AluY SINE Alu -10 301 1 180 0 0 0 chr4 141337469 141337489 -42951173 + (TTG)n Simple_repeat Simple_repeat 2 21 0 219 198 0 58 chr4 141337685 141337771 -42950891 + (CATATA)n Simple_repeat Simple_repeat 2 82 0 22 0 0 0 chr4 141337842 141337864 -42950798 + AT_rich Low_complexity Low_complexity 1 22 0 205 200 0 0 chr4 141338357 141338397 -42950265 - L2 LINE L2 -9 3304 3265 21 71 0 0 chr4 141338398 141338440 -42950222 + AT_rich Low_complexity Low_complexity 1 42 0 265 282 20 24 chr4 141338539 141338712 -42949950 + MIR SINE MIR 23 247 -15 216 281 0 18 chr4 141338767 141338824 -42949838 + L2 LINE L2 3215 3270 -2 25 31 0 0 chr4 141339042 141339074 -42949588 + AT_rich Low_complexity Low_complexity 1 32 0 189 0 0 0 chr4 141339589 141339610 -42949052 + (A)n Simple_repeat Simple_repeat 1 21 0 2849 57 8 3 chr4 141339610 141340008 -42948654 + L1PA7 LINE L1 5769 6168 0 312 308 49 114 chr4 141340943 141341310 -42947352 - L2 LINE L2 -36 3236 2894 946 167 39 59 chr4 141343564 141343768 -42944894 + AluJb SINE Alu 1 200 -112 234 288 76 42 chr4 141344247 141344365 -42944297 - HAL1 LINE L1 -904 1603 1482 255 340 20 20 chr4 141344401 141344501 -42944161 - L2 LINE L2 -2437 877 778 541 167 129 8 chr4 141345868 141346023 -42942639 - L1MA8 LINE L1 -4 6287 6126 576 206 136 25 chr4 141346034 141346319 -42942343 + MER33 DNA MER1_type 1 340 -23 411 73 0 0 chr4 141347363 141347418 -42941244 + (CA)n Simple_repeat Simple_repeat 2 56 0 278 121 0 17 chr4 141347418 141347432 -42941230 + (GA)n Simple_repeat Simple_repeat 1 14 -43 2138 94 0 4 chr4 141347432 141347708 -42940954 + AluSq SINE Alu 27 301 -12 278 121 0 17 chr4 141347708 141347751 -42940911 + (GA)n Simple_repeat Simple_repeat 14 57 0 10997 97 4 3 chr4 141348249 141349897 -42938765 + L1P LINE L1 3147 4796 -1350 448 277 12 0 chr4 141349898 141350064 -42938598 + (TA)n Simple_repeat Simple_repeat 1 168 0 308 299 23 0 chr4 141350089 141350176 -42938486 - L1MC4 LINE L1 -1339 6703 6615 319 315 0 0 chr4 141350183 141350272 -42938390 - L1MC4 LINE L1 -1339 6703 6615 473 157 0 5 chr4 141350273 141350376 -42938286 + L1P LINE L1 4791 4890 -1256 * 1312 88 0 0 chr4 141350367 141350561 -42938101 + L1P3 LINE L1 3561 3754 -2392 * 3854 65 23 3 chr4 141350557 141351442 -42937220 + L1P3 LINE L1 4881 5780 -374 2199 96 0 14 chr4 141351442 141351734 -42936928 + AluY SINE Alu 1 288 -23 916 318 59 51 chr4 141354516 141356052 -42932610 - HERVL LTR ERVL -968 4796 3185 2169 121 0 0 chr4 141356247 141356545 -42932117 - AluSx SINE Alu -14 298 1 263 310 46 11 chr4 141356783 141356870 -42931792 - MIR3 SINE MIR 0 208 119 1073 189 58 128 chr4 141358502 141358910 -42929752 + MLT2D LTR ERVL 1 377 -37 225 0 0 0 chr4 141358910 141358935 -42929727 + (TG)n Simple_repeat Simple_repeat 2 26 0 1073 189 58 128 chr4 141358935 141358971 -42929691 + MLT2D LTR ERVL 377 414 0 667 89 10 10 chr4 141360267 141360368 -42928294 + AluY SINE Alu 204 304 -7 2289 147 30 21 chr4 141360376 141360806 -42927856 + L1MA7 LINE L1 5494 5927 -364 651 189 49 161 chr4 141360807 141361198 -42927464 + MER4A LTR ERV1 1 347 -317 722 228 72 42 chr4 141361202 141361513 -42927149 + MER4C LTR ERV1 276 696 -3 1686 153 39 28 chr4 141361517 141361877 -42926785 + L1MA7 LINE L1 5926 6289 -2 255 31 0 0 chr4 141362950 141362982 -42925680 + (TG)n Simple_repeat Simple_repeat 2 33 0 1903 106 81 0 chr4 141362982 141363255 -42925407 - AluSp SINE Alu -10 303 9 319 313 22 21 chr4 141363624 141363767 -42924895 - MIR3 SINE MIR -3 205 56 27 0 0 0 chr4 141364418 141364445 -42924217 + AT_rich Low_complexity Low_complexity 1 27 0 40348 41 24 1 chr4 141364710 141370125 -42918537 - L1P1 LINE L1 -608 5547 5 2681 137 21 8 chr4 141370126 141370607 -42918055 + Tigger3(Golem) DNA MER2_type 2542 3028 -1 1584 128 4 8 chr4 141370824 141371066 -42917596 + AluY SINE Alu 61 301 -10 462 275 27 20 chr4 141371183 141371332 -42917330 + MIR SINE MIR 65 214 -48 1475 267 79 72 chr4 141371789 141371828 -42916834 + L2 LINE L2 2328 2365 -948 2412 113 16 11 chr4 141371828 141372210 -42916452 - L1PA11 LINE L1 -1 6173 5790 1475 267 79 72 chr4 141372210 141372659 -42916003 + L2 LINE L2 2365 2818 -495 1902 161 0 3 chr4 141372659 141372969 -42915693 - AluSg SINE Alu -1 309 1 1475 267 79 72 chr4 141372969 141373214 -42915448 + L2 LINE L2 2818 3060 -253 331 241 51 58 chr4 141373369 141373506 -42915156 - MIR SINE MIR 0 262 127 258 395 35 0 chr4 141373729 141373843 -42914819 - MIR3 SINE MIR -32 176 59 2084 115 0 4 chr4 141375504 141375782 -42912880 - AluSq SINE Alu -15 298 22 2065 125 3 12 chr4 141376340 141376667 -42911995 + L1PB4 LINE L1 5830 6153 -3 524 90 0 0 chr4 141377242 141377320 -42911342 + Alu SINE Alu 231 308 -3 192 77 0 0 chr4 141378104 141378130 -42910532 + (T)n Simple_repeat Simple_repeat 1 26 0 729 286 91 12 chr4 141378886 141379127 -42909535 - MIR SINE MIR 0 262 3 23 33 0 0 chr4 141380553 141380583 -42908079 + AT_rich Low_complexity Low_complexity 1 30 0 878 193 0 50 chr4 141382436 141382617 -42906045 + FRAM SINE Alu 1 172 -4 557 216 141 67 chr4 141382953 141383222 -42905440 + L2 LINE L2 3025 3313 0 51 17 0 0 chr4 141384413 141384471 -42904191 + AT_rich Low_complexity Low_complexity 1 58 0 277 364 32 19 chr4 141384685 141384839 -42903823 + MIR SINE MIR 59 214 -48 396 330 88 22 chr4 141385179 141385361 -42903301 - MIR3 SINE MIR -12 196 3 1098 173 98 7 chr4 141385906 141386183 -42902479 + MER33 DNA MER1_type 1 302 -22 22 35 0 0 chr4 141387783 141387812 -42900850 + AT_rich Low_complexity Low_complexity 1 29 0 252 297 90 108 chr4 141388093 141388416 -42900246 - L2 LINE L2 -41 3231 2915 189 233 47 0 chr4 141389256 141389299 -42899363 + MIR SINE MIR 85 129 -133 211 146 36 18 chr4 141389449 141389504 -42899158 + GA-rich Low_complexity Low_complexity 4 59 0 775 135 45 0 chr4 141389871 141390004 -42898658 + L1MA5A LINE L1 6149 6287 -10 356 216 34 23 chr4 141390254 141390342 -42898320 - MER5B DNA MER1_type -2 176 88 1242 34 0 0 chr4 141394323 141394471 -42894191 + L1PA3 LINE L1 6008 6155 0 26 98 0 0 chr4 141394624 141394706 -42893956 + AT_rich Low_complexity Low_complexity 1 82 0 1374 113 25 25 chr4 141394706 141394980 -42893682 - Tigger3(Golem) DNA MER2_type -475 2554 2281 496 223 19 0 chr4 141394977 141395080 -42893582 - Tigger3(Golem) DNA MER2_type -2921 108 4 * 2278 95 0 3 chr4 141395082 141395387 -42893275 - AluSc SINE Alu -5 304 1 22 35 0 0 chr4 141395673 141395702 -42892960 + AT_rich Low_complexity Low_complexity 1 29 0 1170 303 82 24 chr4 141397187 141397825 -42890837 + L2 LINE L2 2626 3311 -2 21 36 0 0 chr4 141397863 141397891 -42890771 + AT_rich Low_complexity Low_complexity 1 28 0 1122 282 44 52 chr4 141398631 141398743 -42889919 - L2 LINE L2 -48 3265 3154 351 0 0 0 chr4 141398743 141398782 -42889880 + (TA)n Simple_repeat Simple_repeat 2 40 0 1122 282 44 52 chr4 141398782 141399487 -42889175 - L2 LINE L2 -159 3154 2452 688 202 82 33 chr4 141399847 141400030 -42888632 + MLT1B LTR MaLR 1 192 -198 411 171 0 0 chr4 141400030 141400106 -42888556 + CT-rich Low_complexity Low_complexity 1 76 0 986 214 0 5 chr4 141400127 141400319 -42888343 + MLT1B LTR MaLR 189 379 -11 213 284 216 11 chr4 141400562 141400650 -42888012 - MER5A DNA MER1_type -83 106 1 5692 162 23 27 chr4 141401730 141402855 -42885807 + L1 LINE L1 4054 5174 -972 489 285 86 13 chr4 141403565 141403716 -42884946 + MIR3 SINE MIR 19 180 -28 259 339 44 56 chr4 141405780 141405960 -42882702 + MIR SINE MIR 3 180 -82 1398 127 1 22 chr4 141406358 141406718 -42881944 - L1PB1 LINE L1 -682 5469 5115 4503 89 37 2 chr4 141406720 141407010 -42881652 + L1PB1 LINE L1 5480 5758 -393 345 47 0 0 chr4 141407010 141407053 -42881609 + (CA)n Simple_repeat Simple_repeat 1 43 0 4503 89 37 2 chr4 141407053 141407403 -42881259 + L1PB1 LINE L1 5758 6143 -8 302 328 102 16 chr4 141408012 141408140 -42880522 + L1ME1 LINE L1 255 393 -5677 2679 235 111 22 chr4 141408325 141410019 -42878643 + L1ME1 LINE L1 4226 6085 -15 1089 288 127 30 chr4 141411261 141411695 -42876967 - L2 LINE L2 -13 3300 2825 1086 284 163 27 chr4 141411695 141412217 -42876445 - MLT1E LTR MaLR 0 593 1 852 276 173 42 chr4 141412217 141412738 -42875924 - L2 LINE L2 -486 2828 2240 2074 152 33 12 chr4 141412741 141413077 -42875585 - MER7A DNA MER2_type 0 346 6 2159 331 135 44 chr4 141413080 141414607 -42874055 - L2 LINE L2 -1075 2239 574 22 0 0 0 chr4 141415181 141415203 -42873459 + AT_rich Low_complexity Low_complexity 1 22 0 1447 227 32 22 chr4 141417083 141417453 -42871209 - MLT1A2 LTR MaLR 0 374 1 937 151 62 0 chr4 141418023 141418215 -42870447 + L1MA4 LINE L1 6092 6295 -5 2315 74 0 14 chr4 141418278 141418574 -42870088 + AluY SINE Alu 5 296 -15 22 80 0 0 chr4 141418623 141418673 -42869989 + AT_rich Low_complexity Low_complexity 1 50 0 317 358 99 0 chr4 141419925 141420146 -42868516 + HAL1b LINE L1 400 642 -706 222 183 17 17 chr4 141420165 141420225 -42868437 + (TATAA)n Simple_repeat Simple_repeat 1 60 0 297 118 0 0 chr4 141420765 141420816 -42867846 + (CA)n Simple_repeat Simple_repeat 2 52 0 231 205 0 0 chr4 141420817 141420856 -42867806 - Tigger1 DNA MER2_type -3 2415 2377 5573 119 52 20 chr4 141420868 141421783 -42866879 - Tigger1 DNA MER2_type -1461 957 13 22 70 0 0 chr4 141421785 141421828 -42866834 + AT_rich Low_complexity Low_complexity 1 43 0 843 214 17 11 chr4 141421863 141422041 -42866621 - MER58A DNA MER1_type -1 223 45 278 276 60 0 chr4 141422225 141422341 -42866321 + Tigger8 DNA MER2_type 188 310 -356 290 258 47 74 chr4 141422382 141422572 -42866090 + Tigger8 DNA MER2_type 427 611 -55 306 257 2 22 chr4 141423212 141423310 -42865352 - HAL1b LINE L1 -5 6116 1257 2124 119 10 0 chr4 141423327 141423637 -42865025 - AluSp SINE Alu 0 313 1 22 0 0 0 chr4 141423820 141423842 -42864820 + AT_rich Low_complexity Low_complexity 1 22 0 310 216 0 27 chr4 141423846 141423920 -42864742 + L1ME4a LINE L1 5967 6038 -83 35 54 0 0 chr4 141424813 141424869 -42863793 + AT_rich Low_complexity Low_complexity 1 56 0 319 307 39 0 chr4 141424877 141425030 -42863632 - L1ME LINE L1 -427 5694 5536 34 65 0 0 chr4 141425238 141425300 -42863362 + AT_rich Low_complexity Low_complexity 1 62 0 2188 126 10 0 chr4 141426113 141426422 -42862240 - AluSx SINE Alu 0 312 1 578 386 59 27 chr4 141426596 141427345 -42861317 + L2 LINE L2 1890 2662 -652 217 217 0 0 chr4 141427739 141427785 -42860877 + (TG)n Simple_repeat Simple_repeat 2 47 0 285 109 0 0 chr4 141428437 141428483 -42860179 + (TA)n Simple_repeat Simple_repeat 2 47 0 1673 214 62 77 chr4 141428488 141429049 -42859613 - MLT2B3 LTR ERVL 0 554 2 31 0 0 0 chr4 141429617 141429648 -42859014 + AT_rich Low_complexity Low_complexity 1 31 0 282 29 0 0 chr4 141430773 141430808 -42857854 + (TG)n Simple_repeat Simple_repeat 1 35 0 458 236 35 49 chr4 141430831 141430975 -42857687 + MIR SINE MIR 47 188 -74 258 320 0 13 chr4 141431369 141431444 -42857218 + L2 LINE L2 3225 3298 -15 395 311 152 12 chr4 141431500 141431744 -42856918 - L2 LINE L2 -655 2659 2382 2066 146 0 0 chr4 141431746 141432054 -42856608 + AluSx SINE Alu 5 312 0 644 237 11 32 chr4 141432116 141432302 -42856360 - MER3 DNA MER1_type 0 209 28 1972 87 38 4 chr4 141432402 141432666 -42855996 - AluY SINE Alu -38 273 1 840 293 19 35 chr4 141432698 141432726 -42855936 + MIR SINE MIR 6 33 -229 1784 166 15 63 chr4 141432726 141433136 -42855526 + MLT1B LTR MaLR 1 390 0 840 293 19 35 chr4 141433136 141433363 -42855299 + MIR SINE MIR 33 257 -5 209 347 32 21 chr4 141433595 141433690 -42854972 + MIR SINE MIR 19 114 -94 445 225 150 0 chr4 141433712 141433832 -42854830 + MER3 DNA MER1_type 7 144 -65 337 301 51 90 chr4 141485411 141485688 -42802974 + MLT1J2 LTR MaLR 63 335 -95 1993 233 71 35 chr4 141485688 141486290 -42802372 - MLT1E3 LTR MaLR 0 624 1 337 301 51 90 chr4 141486290 141486373 -42802289 + MLT1J2 LTR MaLR 335 420 -10 5823 140 51 5 chr4 141486379 141487766 -42800896 - L1PB1 LINE L1 -1 6150 4700 208 328 0 0 chr4 141487853 141487911 -42800751 - L2 LINE L2 -11 3302 3245 244 371 40 13 chr4 141488119 141488270 -42800392 - L3 LINE CR1 -7 1570 1416 369 244 6 141 chr4 141488285 141488441 -42800221 - MER102b DNA MER1_type -5 336 202 659 181 10 137 chr4 141488626 141488830 -42799832 + MER5B DNA MER1_type 1 178 0 237 314 271 7 chr4 141489071 141489211 -42799451 + MER5A DNA MER1_type 13 189 0 2531 63 0 0 chr4 141489319 141489619 -42799043 - AluY SINE Alu -10 301 2 1775 171 31 34 chr4 141489804 141490191 -42798471 + MLT1B LTR MaLR 1 386 -4 366 325 95 0 chr4 141492725 141492851 -42795811 - MIR SINE MIR -105 157 20 399 187 0 13 chr4 141493487 141493562 -42795100 - MER5B DNA MER1_type 0 178 105 270 295 53 79 chr4 141493624 141493814 -42794848 - MIR SINE MIR -76 186 2 1904 181 39 24 chr4 141494283 141494741 -42793921 + Charlie1b DNA MER1_type 59 523 0 392 295 210 17 chr4 141495028 141495459 -42793203 - L2 LINE L2 -189 3124 2619 25 0 0 0 chr4 141495696 141495721 -42792941 + AT_rich Low_complexity Low_complexity 1 25 0 288 200 0 0 chr4 141496384 141496444 -42792218 + (CA)n Simple_repeat Simple_repeat 1 60 0 646 257 39 24 chr4 141497019 141497225 -42791437 + MER63A DNA MER1_type 2 210 0 23 33 0 0 chr4 141498103 141498133 -42790529 + AT_rich Low_complexity Low_complexity 1 30 0 333 378 7 7 chr4 141498429 141498564 -42790098 - MIR3 SINE MIR -19 189 55 2269 82 0 22 chr4 141498597 141498913 -42789749 + AluY SINE Alu 1 309 -2 529 339 71 0 chr4 141499081 141499249 -42789413 + MER5A DNA MER1_type 4 183 -6 2566 157 51 8 chr4 141499595 141500104 -42788558 - L1MA9 LINE L1 0 6312 5782 238 320 0 13 chr4 141500104 141500179 -42788483 + (CATA)n Simple_repeat Simple_repeat 3 76 0 2829 140 18 62 chr4 141500179 141500813 -42787849 - L1MA9 LINE L1 -519 5793 5182 207 0 0 0 chr4 141500984 141501007 -42787655 + (A)n Simple_repeat Simple_repeat 1 23 0 965 252 173 103 chr4 141501693 141502723 -42785939 + MER52A LTR ERV1 654 1755 0 997 320 72 6 chr4 141502910 141503559 -42785103 - L1ME3A LINE L1 -223 5947 5256 357 81 72 9 chr4 141503560 141503671 -42784991 + (TA)n Simple_repeat Simple_repeat 1 118 0 2182 88 0 10 chr4 141504109 141504406 -42784256 - AluY SINE Alu -11 300 7 993 255 94 70 chr4 141504670 141505168 -42783494 + LTR33 LTR ERVL 12 521 0 1759 170 0 28 chr4 141506269 141506587 -42782075 - AluJo SINE Alu -3 309 1 188 301 205 0 chr4 141507274 141507357 -42781305 + MIR SINE MIR 8 107 -155 1751 228 40 91 chr4 141507361 141507957 -42780705 + MLT1E LTR MaLR 5 570 -23 298 294 112 14 chr4 141507957 141508100 -42780562 + MIR SINE MIR 105 261 -1 237 306 49 37 chr4 141509607 141509764 -42778898 + MIR SINE MIR 57 217 -45 24 0 0 0 chr4 141510171 141510195 -42778467 + AT_rich Low_complexity Low_complexity 1 24 0 1289 112 24 0 chr4 141510543 141510749 -42777913 + L1PA13 LINE L1 5944 6154 -9 36 53 0 0 chr4 141513484 141513541 -42775121 + AT_rich Low_complexity Low_complexity 1 57 0 21 36 0 0 chr4 141515478 141515506 -42773156 + AT_rich Low_complexity Low_complexity 1 28 0 842 248 136 35 chr4 141516683 141517349 -42771313 + LTR50 LTR ERVL 19 795 0 29 28 0 0 chr4 141518346 141518382 -42770280 + AT_rich Low_complexity Low_complexity 1 36 0 207 186 0 0 chr4 141519454 141519497 -42769165 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 250 301 212 18 chr4 141519692 141519805 -42768857 + MIR3 SINE MIR 69 203 -5 883 251 121 66 chr4 141520711 141521187 -42767475 - MLT1H LTR MaLR -6 543 1 407 225 12 12 chr4 141522458 141522538 -42766124 + MER21B LTR ERV1 13 92 -771 2560 233 83 35 chr4 141522559 141523353 -42765309 + MER21B LTR ERV1 20 851 -12 203 314 0 29 chr4 141523526 141523596 -42765066 + MIR3 SINE MIR 140 207 -1 647 219 5 94 chr4 141524394 141524586 -42764076 + MER5B DNA MER1_type 1 175 -3 197 202 234 32 chr4 141524624 141524718 -42763944 + MER5A DNA MER1_type 43 155 -34 517 258 44 39 chr4 141525105 141525287 -42763375 + MIR SINE MIR 20 202 -60 283 275 0 0 chr4 141525722 141525802 -42762860 - L3b LINE CR1 -197 1386 1307 476 333 156 6 chr4 141526857 141527196 -42761466 + L2 LINE L2 2450 2839 -475 248 269 195 40 chr4 141527257 141527406 -42761256 + MLT1J LTR MaLR 2 173 -338 330 308 116 29 chr4 141527426 141527598 -42761064 + L2 LINE L2 3003 3189 -124 27 62 0 0 chr4 141527699 141527747 -42760915 + AT_rich Low_complexity Low_complexity 1 48 0 219 373 34 91 chr4 141527755 141528018 -42760644 - L2 LINE L2 -10 3262 3015 2088 153 6 19 chr4 141528511 141528876 -42759786 + L1PA16 LINE L1 5792 6151 -15 329 275 17 0 chr4 141529203 141529323 -42759339 + (TA)n Simple_repeat Simple_repeat 2 123 0 24 53 0 0 chr4 141531615 141531653 -42757009 + AT_rich Low_complexity Low_complexity 1 38 0 794 194 120 71 chr4 141531848 141532214 -42756448 + LTR7 LTR ERV1 29 412 -38 487 240 80 64 chr4 141532720 141533033 -42755629 - LTR33 LTR ERVL 0 521 204 380 109 0 16 chr4 141533041 141533105 -42755557 + (TG)n Simple_repeat Simple_repeat 1 63 0 523 311 51 31 chr4 141533285 141533542 -42755120 - MIR SINE MIR 0 262 1 225 94 0 0 chr4 141534869 141534901 -42753761 + (GGA)n Simple_repeat Simple_repeat 2 33 0 1773 156 36 19 chr4 141535176 141535518 -42753144 + AluJb SINE Alu 1 312 0 1989 118 7 23 chr4 141535519 141535825 -42752837 + AluSx SINE Alu 1 301 -11 6265 142 41 16 chr4 141536339 141538407 -42750255 + L1MA4 LINE L1 4157 6283 -17 951 233 36 24 chr4 141539330 141539579 -42749083 + MIR SINE MIR 5 256 -6 27 49 0 0 chr4 141539605 141539646 -42749016 + AT_rich Low_complexity Low_complexity 1 41 0 553 299 16 16 chr4 141539993 141540177 -42748485 - MIR SINE MIR -65 197 14 559 283 114 43 chr4 141541435 141541803 -42746859 + MLT1L LTR MaLR 177 570 -45 21 36 0 0 chr4 141543018 141543046 -42745616 + AT_rich Low_complexity Low_complexity 1 28 0 453 290 135 26 chr4 141543945 141544138 -42744524 - MIR SINE MIR -43 219 6 24 53 0 0 chr4 141546452 141546490 -42742172 + AT_rich Low_complexity Low_complexity 1 38 0 682 281 81 61 chr4 141546747 141547305 -42741357 - L1MC3 LINE L1 -1899 5886 5318 643 319 71 62 chr4 141547473 141548102 -42740560 - L1MC3 LINE L1 -1052 5094 4457 2015 139 7 0 chr4 141548102 141548397 -42740265 + AluSx SINE Alu 1 297 -15 643 319 71 62 chr4 141548397 141548473 -42740189 - L1MC3 LINE L1 -1689 4457 4383 308 221 88 81 chr4 141548469 141548605 -42740057 - L1MC4 LINE L1 -1337 6705 6569 * 253 336 25 0 chr4 141548925 141549047 -42739615 - L1MC3 LINE L1 -2255 3891 3767 2127 139 0 54 chr4 141550158 141550526 -42738136 - MER7A DNA MER2_type 0 346 1 3639 91 17 16 chr4 141550558 141551248 -42737414 - L1PA13 LINE L1 -1 6162 5390 25 75 0 0 chr4 141551620 141551673 -42736989 + AT_rich Low_complexity Low_complexity 1 53 0 3021 144 68 33 chr4 141551692 141552277 -42736385 - L1MA7 LINE L1 -44 6247 5647 2746 146 5 0 chr4 141552277 141552709 -42735953 + MER57B LTR ERV1 1 434 0 3021 144 68 33 chr4 141552709 141552729 -42735933 - L1MA7 LINE L1 -644 5647 5629 4292 119 22 3 chr4 141552729 141553360 -42735302 + MER57B-int LTR ERV1 21 663 -6874 2457 119 44 18 chr4 141553374 141553762 -42734900 + MER57B-int LTR ERV1 933 1330 -4616 * 25347 118 50 23 chr4 141553759 141554846 -42733816 + MER57-int LTR ERV1 648 1704 -5833 1951 156 3 0 chr4 141554846 141555148 -42733514 + AluSg SINE Alu 1 303 -7 25347 118 50 23 chr4 141555148 141557151 -42731511 + MER57-int LTR ERV1 1704 3652 -3885 1867 125 7 17 chr4 141557151 141557492 -42731170 + AluSq SINE Alu 1 338 0 25347 118 50 23 chr4 141557492 141559117 -42729545 + MER57-int LTR ERV1 3652 7145 -392 769 115 16 8 chr4 141559119 141559241 -42729421 + LTR54B LTR ERV1 5 127 -371 1285 77 221 22 chr4 141559241 141559463 -42729199 + MER57B-int LTR ERV1 7272 7537 0 2528 121 69 0 chr4 141559463 141559869 -42728793 + MER57B LTR ERV1 1 434 0 1972 137 32 59 chr4 141559869 141560014 -42728648 - L1MA7 LINE L1 -667 5645 5498 2073 102 10 7 chr4 141560014 141560319 -42728343 - AluY SINE Alu -5 306 1 1972 137 32 59 chr4 141560319 141560811 -42727851 - L1MA7 LINE L1 -814 5498 5023 3167 152 26 5 chr4 141561377 141561943 -42726719 + L1MB1 LINE L1 5587 6164 -4 2807 236 59 24 chr4 141561976 141562971 -42725691 + L1ME2 LINE L1 5127 6162 -2 2230 100 3 7 chr4 141563432 141563742 -42724920 + AluSc SINE Alu 1 309 0 255 203 86 109 chr4 141563892 141563970 -42724692 + MIR SINE MIR 121 199 -63 2537 46 0 10 chr4 141563970 141564276 -42724386 + AluY SINE Alu 3 305 -6 405 0 0 0 chr4 141564276 141564321 -42724341 + (TA)n Simple_repeat Simple_repeat 1 45 0 255 203 86 109 chr4 141564321 141564369 -42724293 + MIR SINE MIR 197 245 -17 281 195 86 109 chr4 141564991 141565069 -42723593 + MIR SINE MIR 121 199 -63 2091 109 0 10 chr4 141565069 141565373 -42723289 + AluY SINE Alu 3 303 -8 423 0 0 0 chr4 141565373 141565420 -42723242 + (TA)n Simple_repeat Simple_repeat 2 48 0 281 195 86 109 chr4 141565420 141565468 -42723194 + MIR SINE MIR 197 245 -17 2328 93 17 0 chr4 141566163 141566463 -42722199 - AluSc SINE Alu -4 305 1 327 250 104 0 chr4 141568584 141568680 -42719982 - MIR SINE MIR -3 259 154 216 244 205 13 chr4 141570767 141570845 -42717817 - L2 LINE L2 0 3313 3221 269 122 0 0 chr4 141570903 141570952 -42717710 + L1MB2 LINE L1 6119 6167 -4 243 161 0 0 chr4 141572098 141572154 -42716508 + GA-rich Low_complexity Low_complexity 1 56 0 193 341 94 0 chr4 141573502 141573587 -42715075 + MIR SINE MIR 20 112 -150 184 161 32 0 chr4 141574008 141574039 -42714623 - MER5B DNA MER1_type -41 137 106 241 319 179 0 chr4 141574693 141574834 -42713828 + MIR SINE MIR 20 183 -71 1952 141 7 0 chr4 141575250 141575541 -42713121 + AluSx SINE Alu 5 297 -15 2145 118 0 0 chr4 141576184 141576499 -42712163 + AluSx SINE Alu 1 315 0 387 344 40 0 chr4 141577629 141577754 -42710908 + MIR SINE MIR 82 211 -51 2174 127 0 0 chr4 141578583 141578883 -42709779 + AluSx SINE Alu 1 300 -12 6630 23 5 0 chr4 141582356 141583135 -42705527 + L1PA4 LINE L1 5368 6150 -5 244 317 92 8 chr4 141584351 141584471 -42704191 + MIR SINE MIR 77 206 -56 201 312 54 0 chr4 141584532 141584625 -42704037 - MIR SINE MIR -81 181 84 22 56 0 0 chr4 141585271 141585307 -42703355 + AT_rich Low_complexity Low_complexity 1 36 0 1224 335 163 23 chr4 141585328 141586335 -42702327 - L2 LINE L2 0 3313 2174 224 366 38 0 chr4 141586469 141586601 -42702061 + MIR3 SINE MIR 10 151 -67 601 333 10 0 chr4 141587929 141588121 -42700541 - MIR SINE MIR -67 195 2 195 424 28 7 chr4 141588928 141589072 -42699590 + MIR SINE MIR 5 151 -111 402 320 35 17 chr4 141589114 141589286 -42699376 + MIR SINE MIR 88 262 0 1740 181 0 28 chr4 141589496 141589817 -42698845 + AluJo SINE Alu 1 312 0 247 267 172 0 chr4 141591526 141591642 -42697020 - L1ME LINE L1 -204 5917 5782 26 64 0 0 chr4 141591861 141591908 -42696754 + AT_rich Low_complexity Low_complexity 1 47 0 196 225 8 155 chr4 141592626 141592755 -42695907 + L2 LINE L2 3040 3149 -164 27 0 0 0 chr4 141594342 141594369 -42694293 + AT_rich Low_complexity Low_complexity 1 27 0 26 30 0 0 chr4 141594998 141595031 -42693631 + AT_rich Low_complexity Low_complexity 1 33 0 36 53 0 0 chr4 141595107 141595164 -42693498 + AT_rich Low_complexity Low_complexity 1 57 0 22 0 0 0 chr4 141595354 141595376 -42693286 + AT_rich Low_complexity Low_complexity 1 22 0 1294 94 128 0 chr4 141601766 141601969 -42686693 + MER30 DNA MER1_type 1 229 -1 6685 202 33 33 chr4 141602456 141604645 -42684017 + L1P3 LINE L1 1 2214 -4247 2181 133 6 3 chr4 141604652 141604989 -42683673 + L1P3 LINE L1 3607 3944 -2517 * 5363 130 9 8 chr4 141604974 141605852 -42682810 + L1P LINE L1 4755 5633 -828 996 327 48 12 chr4 141606019 141606435 -42682227 + LTR16B LTR ERVL 34 464 0 217 237 0 68 chr4 141607091 141607150 -42681512 - L2 LINE L2 0 3272 3218 571 261 46 71 chr4 141607697 141607935 -42680727 - L1MA9 LINE L1 0 6291 6060 186 240 40 27 chr4 141608794 141608869 -42679793 - L2 LINE L2 -1605 1709 1634 2283 92 0 16 chr4 141609101 141609405 -42679257 + AluSg SINE Alu 1 299 -11 241 274 35 0 chr4 141609412 141609525 -42679137 + L1M4 LINE L1 5114 5230 -916 837 289 114 35 chr4 141609544 141609741 -42678921 + L1ME3A LINE L1 25 205 -6218 2398 126 22 6 chr4 141609741 141610099 -42678563 - THE1B LTR MaLR 0 364 1 837 289 114 35 chr4 141610099 141610358 -42678304 + L1ME3A LINE L1 205 517 -5906 405 344 51 22 chr4 141610493 141610769 -42677893 + L1ME3A LINE L1 819 1102 -5321 186 203 27 14 chr4 141610779 141610853 -42677809 + GA-rich Low_complexity Low_complexity 2 76 0 781 238 73 16 chr4 141610892 141611199 -42677463 + L1ME3A LINE L1 1350 1849 -5082 528 145 0 0 chr4 141611207 141611290 -42677372 - L1PA8 LINE L1 -863 5283 5201 6247 80 5 12 chr4 141611290 141612169 -42676493 + L1PA8 LINE L1 5301 6172 0 363 255 69 64 chr4 141612170 141612358 -42676304 + L1ME3A LINE L1 1726 1914 -4925 2043 254 104 7 chr4 141612380 141613120 -42675542 + L1ME3A LINE L1 3112 3923 -3018 603 299 136 13 chr4 141613249 141613697 -42674965 + L1ME3A LINE L1 6157 6659 -306 265 136 0 0 chr4 141613800 141613844 -42674818 - MADE1 DNA Mariner -1 79 36 189 358 130 52 chr4 141614418 141614918 -42673744 - L2 LINE L2 -2467 847 309 216 0 0 0 chr4 141615304 141615328 -42673334 + (A)n Simple_repeat Simple_repeat 1 24 0 189 0 0 0 chr4 141615778 141615799 -42672863 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 566 277 126 6 chr4 141616287 141616396 -42672266 + MER5A DNA MER1_type 9 144 -45 2332 98 7 0 chr4 141616396 141616691 -42671971 + AluSc SINE Alu 1 297 -12 566 277 126 6 chr4 141616691 141616740 -42671922 + MER5A DNA MER1_type 144 186 -3 277 298 163 33 chr4 141617572 141617787 -42670875 - MIR SINE MIR 0 262 20 21 57 0 0 chr4 141617913 141617948 -42670714 + AT_rich Low_complexity Low_complexity 1 35 0 2232 112 3 3 chr4 141618222 141618525 -42670137 - AluSx SINE Alu -9 303 1 2273 91 0 0 chr4 141618904 141619212 -42669450 - L1PA6 LINE L1 -26 6128 5821 181 219 0 0 chr4 141621187 141621228 -42667434 - L2 LINE L2 0 3313 3273 388 240 205 12 chr4 141621606 141621777 -42666885 + MIR SINE MIR 4 207 -55 6446 136 32 4 chr4 141622002 141623562 -42665100 - L1MA1 LINE L1 0 6302 4692 867 231 37 24 chr4 141623616 141623914 -42664748 + L1ME1 LINE L1 4437 4738 -1408 2205 237 57 61 chr4 141623967 141624737 -42663925 + L1ME1 LINE L1 4835 5611 -555 827 173 0 0 chr4 141624737 141624870 -42663792 - FLAM_C SINE Alu 0 133 1 2205 237 57 61 chr4 141624870 141625406 -42663256 + L1ME1 LINE L1 5611 6148 -18 34 0 0 0 chr4 141625461 141625495 -42663167 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr4 141626334 141626365 -42662297 + AT_rich Low_complexity Low_complexity 1 31 0 211 312 13 13 chr4 141626385 141626462 -42662200 + GA-rich Low_complexity Low_complexity 2 78 0 327 306 10 0 chr4 141627150 141627248 -42661414 - MIR SINE MIR -118 144 46 1547 188 30 4 chr4 141627871 141628142 -42660520 + AluJb SINE Alu 1 278 -34 207 341 173 25 chr4 141628967 141629290 -42659372 + L2 LINE L2 2832 3202 -111 26 50 0 0 chr4 141629358 141629398 -42659264 + AT_rich Low_complexity Low_complexity 1 40 0 304 136 61 45 chr4 141629955 141630021 -42658641 - MIR SINE MIR -27 235 169 1759 228 97 59 chr4 141630022 141630554 -42658108 + MER77 LTR ERV1 4 561 -44 2575 105 13 8 chr4 141630554 141630927 -42657735 + THE1C LTR MaLR 1 375 0 1759 228 97 59 chr4 141630927 141630974 -42657688 + MER77 LTR ERV1 561 605 0 430 291 93 0 chr4 141630974 141631125 -42657537 - MIR SINE MIR -87 175 11 2452 166 29 5 chr4 141632614 141633030 -42655632 + MSTB LTR MaLR 1 426 0 9036 168 14 28 chr4 141633030 141634705 -42653957 + MSTB-int LTR MaLR 1 1651 0 2413 180 24 2 chr4 141634705 141635122 -42653540 + MSTB LTR MaLR 1 426 0 2589 165 9 7 chr4 141635412 141635843 -42652819 + MSTB1 LTR MaLR 1 432 0 546 267 127 55 chr4 141636103 141636499 -42652163 + L1ME4a LINE L1 4235 4657 -1489 250 343 57 0 chr4 141636668 141636738 -42651924 - L2 LINE L2 0 3272 3199 302 224 61 0 chr4 141637294 141637392 -42651270 + L1ME4a LINE L1 5379 5482 -639 547 283 34 17 chr4 141637726 141637959 -42650703 + L1ME4a LINE L1 5598 5834 -287 233 328 65 59 chr4 141638064 141638250 -42650412 + MIR SINE MIR 57 243 -19 476 336 124 20 chr4 141638368 141638716 -42649946 + LTR67 LTR ERVL 21 404 -153 500 126 109 126 chr4 141638788 141638971 -42649691 + ORSL DNA AcHobo 11 190 -85 209 281 105 64 chr4 141639311 141639482 -42649180 - L3 LINE CR1 -37 1540 1363 354 355 62 16 chr4 141640155 141640462 -42648200 + L1PA12 LINE L1 7 327 -7254 7551 258 43 14 chr4 141642248 141642274 -42646388 + L1P LINE L1 942 966 -5180 217 0 29 29 chr4 141642274 141642308 -42646354 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7551 258 43 14 chr4 141642308 141644883 -42643779 + L1P LINE L1 966 3618 -2528 1073 198 16 0 chr4 141644884 141645076 -42643586 - AluJo SINE Alu -117 195 1 3173 197 20 31 chr4 141645084 141645786 -42642876 - L1P LINE L1 -1823 4323 3630 5524 125 19 2 chr4 141645786 141646949 -42641713 + L1PA15 LINE L1 4954 6161 -4 1658 82 0 0 chr4 141647927 141648133 -42640529 + AluSc SINE Alu 97 302 -7 25 0 0 0 chr4 141648468 141648493 -42640169 + AT_rich Low_complexity Low_complexity 1 25 0 30 0 0 0 chr4 141648529 141648559 -42640103 + AT_rich Low_complexity Low_complexity 1 30 0 437 245 115 31 chr4 141648727 141648919 -42639743 + MER3 DNA MER1_type 2 209 0 198 351 10 77 chr4 141649732 141649940 -42638722 + L2 LINE L2 3102 3295 -18 243 0 0 0 chr4 141650159 141650186 -42638476 + (T)n Simple_repeat Simple_repeat 1 27 0 21 36 0 0 chr4 141651255 141651283 -42637379 + AT_rich Low_complexity Low_complexity 1 28 0 1652 80 0 4 chr4 141651584 141651809 -42636853 - L1PA12 LINE L1 -10 6158 5935 619 299 113 31 chr4 141652837 141653196 -42635466 + MLT1J2 LTR MaLR 10 413 -37 6445 257 87 21 chr4 141653196 141653932 -42634730 - L1ME LINE L1 -592 5641 4955 1994 148 19 38 chr4 141653932 141654303 -42634359 + THE1B LTR MaLR 1 364 0 6445 257 87 21 chr4 141654303 141656371 -42632291 - L1ME LINE L1 -1278 4955 2614 2145 118 3 3 chr4 141656371 141656676 -42631986 - AluSx SINE Alu -6 306 2 6445 257 87 21 chr4 141656676 141656994 -42631668 - L1ME LINE L1 -3619 2614 2318 1531 187 0 36 chr4 141657057 141657362 -42631300 - AluJb SINE Alu -8 304 11 4316 119 22 35 chr4 141657408 141658182 -42630480 - L1MA8 LINE L1 -2 6289 5526 900 180 23 33 chr4 141658182 141658386 -42630276 + L1MB1 LINE L1 4941 5146 -1145 1796 142 0 11 chr4 141658386 141658654 -42630008 + AluSx SINE Alu 32 296 -16 900 180 23 33 chr4 141658654 141658835 -42629827 + L1MB1 LINE L1 5146 5504 -787 21 71 0 0 chr4 141658867 141658909 -42629753 + AT_rich Low_complexity Low_complexity 1 42 0 2541 96 28 0 chr4 141658915 141659271 -42629391 + THE1C LTR MaLR 1 366 -9 9338 120 40 47 chr4 141659279 141660849 -42627813 + THE1C-int LTR MaLR 17 1575 -5 2544 125 16 0 chr4 141660856 141661225 -42627437 + THE1C LTR MaLR 1 375 0 307 231 97 37 chr4 141661301 141661435 -42627227 - L1ME LINE L1 -4484 1912 1771 469 293 125 14 chr4 141661449 141661729 -42626933 - L1ME LINE L1 -4651 1745 1435 250 151 0 38 chr4 141662331 141662384 -42626278 - MER4-int LTR ERV1 -5440 1158 1108 1184 269 57 14 chr4 141663120 141663570 -42625092 - L1ME3A LINE L1 -216 5954 5480 263 215 127 0 chr4 141665091 141665170 -42623492 + L1MC4 LINE L1 6615 6703 -1339 231 267 47 0 chr4 141665114 141665200 -42623462 - L1MC4 LINE L1 -1339 6703 6614 * 1718 178 7 7 chr4 141665490 141665793 -42622869 + AluJb SINE Alu 1 303 -9 32 26 0 0 chr4 141665809 141665848 -42622814 + AT_rich Low_complexity Low_complexity 1 39 0 715 169 115 0 chr4 141667393 141667523 -42621139 + MER67C LTR ERV1 114 258 -452 1012 112 13 0 chr4 141667526 141667678 -42620984 - L1MB1 LINE L1 -346 5822 5669 1985 172 8 0 chr4 141667679 141668033 -42620629 + L1MB1 LINE L1 5812 6168 0 615 221 16 0 chr4 141668044 141668166 -42620496 + MER67D LTR ERV1 218 341 -173 319 333 56 31 chr4 141668457 141668853 -42619809 + HAL1 LINE L1 1087 1501 -1006 3983 171 24 56 chr4 141668853 141669475 -42619187 + LTR39 LTR ERV1 1 593 -190 1918 139 35 0 chr4 141669475 141669762 -42618900 - AluSq SINE Alu -16 297 1 3983 171 24 56 chr4 141669762 141669948 -42618714 + LTR39 LTR ERV1 593 783 0 319 333 56 31 chr4 141669948 141670091 -42618571 + HAL1 LINE L1 1501 1639 -868 657 303 166 40 chr4 141670276 141670983 -42617679 + L1MC4a LINE L1 4256 5051 -1095 629 302 102 34 chr4 141671067 141671740 -42616922 + L1MC4a LINE L1 5187 5360 -786 1297 143 22 48 chr4 141672013 141672244 -42616418 + AluJo SINE Alu 78 302 -10 419 341 161 10 chr4 141672405 141672610 -42616052 + MIR SINE MIR 25 260 -2 242 416 43 28 chr4 141674016 141674271 -42614391 + L2 LINE L2 2992 3250 -22 1516 168 160 70 chr4 141674893 141675296 -42613366 + MER67D LTR ERV1 4 456 -58 1697 119 15 8 chr4 141675296 141675557 -42613105 - AluSx SINE Alu -49 263 1 1516 168 160 70 chr4 141675557 141675622 -42613040 + MER67D LTR ERV1 456 514 0 932 219 43 9 chr4 141675710 141675920 -42612742 + MER20 DNA MER1_type 1 217 -2 2904 60 3 5 chr4 141676210 141676593 -42612069 - L1PA7 LINE L1 0 6154 5773 692 85 0 0 chr4 141676593 141676687 -42611975 + L1P LINE L1 4919 5012 -1134 268 81 0 0 chr4 141676690 141676727 -42611935 + L1P LINE L1 4994 5030 -1116 468 305 26 0 chr4 141676727 141676881 -42611781 + MIR SINE MIR 93 250 -12 794 215 11 6 chr4 141678556 141678733 -42609929 + MER5B DNA MER1_type 1 178 0 342 333 45 0 chr4 141679198 141679309 -42609353 - L2 LINE L2 -2 3270 3155 463 290 45 40 chr4 141680139 141680229 -42608433 - L2 LINE L2 0 3313 3225 1506 146 81 92 chr4 141680229 141680436 -42608226 - MLT1A1 LTR MaLR 0 365 162 2079 112 3 3 chr4 141680436 141680730 -42607932 - AluSq SINE Alu -19 294 1 1506 146 81 92 chr4 141680730 141680891 -42607771 - MLT1A1 LTR MaLR -203 162 1 463 290 45 40 chr4 141680891 141681000 -42607662 - L2 LINE L2 -88 3225 3113 2248 124 0 0 chr4 141681812 141682119 -42606543 - AluSx SINE Alu -5 307 1 583 286 119 14 chr4 141683371 141683581 -42605081 - MIR SINE MIR 0 262 31 646 295 104 44 chr4 141683741 141684039 -42604623 + LTR33 LTR ERVL 160 475 -46 187 307 0 107 chr4 141685212 141685287 -42603375 + MIR SINE MIR 24 90 -118 1992 265 32 9 chr4 141685524 141686053 -42602609 + MLT1F LTR MaLR 2 542 0 21 0 0 0 chr4 141687195 141687216 -42601446 + AT_rich Low_complexity Low_complexity 1 21 0 462 205 70 32 chr4 141688297 141688453 -42600209 - MER103 DNA DNA -2 164 3 366 235 29 20 chr4 141689029 141689131 -42599531 + MIR SINE MIR 49 151 -111 213 188 14 109 chr4 141689139 141689277 -42599385 + T-rich Low_complexity Low_complexity 2 126 0 729 232 19 0 chr4 141689377 141689532 -42599130 - FAM SINE Alu -17 158 1 295 356 149 10 chr4 141689742 141689950 -42598712 + MIR SINE MIR 19 255 -7 678 219 62 34 chr4 141690150 141690328 -42598334 + MER5A DNA MER1_type 1 183 -6 7792 16 1 0 chr4 141690680 141691581 -42597081 - L1PA3 LINE L1 0 6155 5254 * 12092 26 0 0 chr4 141691571 141693003 -42595659 + L1PA3 LINE L1 3800 5231 -915 31 58 0 0 chr4 141694257 141694309 -42594353 + AT_rich Low_complexity Low_complexity 1 52 0 215 236 0 18 chr4 141694362 141694417 -42594245 + (CATA)n Simple_repeat Simple_repeat 1 54 0 318 324 102 0 chr4 141694743 141694851 -42593811 + Charlie1a DNA MER1_type 2 120 -1335 1026 206 77 52 chr4 141694903 141695190 -42593472 + Charlie1a DNA MER1_type 109 402 -1053 1482 243 91 36 chr4 141695196 141695728 -42592934 - MLT1F1 LTR MaLR 0 567 1 * 3770 210 62 30 chr4 141695728 141696747 -42591915 + Charlie1a DNA MER1_type 405 1455 0 235 224 121 0 chr4 141697103 141697161 -42591501 + MER117 DNA MER1_type 26 90 -107 639 226 119 0 chr4 141697172 141697349 -42591313 - MLT1D LTR MaLR -3 502 305 1096 284 75 34 chr4 141697368 141697553 -42591109 - L2 LINE L2 0 3313 3137 333 118 0 0 chr4 141697553 141697604 -42591058 + (TA)n Simple_repeat Simple_repeat 1 51 0 1096 284 75 34 chr4 141697604 141698233 -42590429 - L2 LINE L2 -176 3137 2479 183 156 0 0 chr4 141698302 141698334 -42590328 + GA-rich Low_complexity Low_complexity 3 34 0 542 332 114 28 chr4 141698951 141699630 -42589032 + L2 LINE L2 2491 3220 -93 34 0 0 0 chr4 141700477 141700511 -42588151 + AT_rich Low_complexity Low_complexity 1 34 0 1007 289 17 7 chr4 141700738 141701039 -42587623 + MLT1I LTR MaLR 98 401 -8 1302 197 86 46 chr4 141701102 141701453 -42587209 + MLT1A1 LTR MaLR 1 365 0 46 0 0 0 chr4 141701498 141701544 -42587118 + AT_rich Low_complexity Low_complexity 1 46 0 262 317 125 0 chr4 141702413 141702533 -42586129 + MIR SINE MIR 128 262 0 275 344 74 11 chr4 141702599 141702788 -42585874 + L2 LINE L2 2149 2349 -965 454 274 40 16 chr4 141702811 141702935 -42585727 + MER115 DNA AcHobo 1 127 -566 2244 93 0 17 chr4 141703636 141703937 -42584725 - AluSc SINE Alu -13 296 1 270 0 0 0 chr4 141704235 141704243 -42584419 + (TA)n Simple_repeat Simple_repeat 1 38 0 270 0 0 0 chr4 141704243 141704273 -42584389 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 387 0 0 0 chr4 141704272 141704315 -42584347 + (GA)n Simple_repeat Simple_repeat 2 44 0 228 235 15 15 chr4 141704316 141704384 -42584278 + (CA)n Simple_repeat Simple_repeat 2 69 0 679 188 44 50 chr4 141704388 141704548 -42584114 + MER6B DNA MER2_type 2 160 -50 411 106 0 0 chr4 141704552 141704618 -42584044 + (TG)n Simple_repeat Simple_repeat 1 66 0 32 43 0 0 chr4 141705898 141705944 -42582718 + AT_rich Low_complexity Low_complexity 1 46 0 25 0 0 0 chr4 141705992 141706017 -42582645 + AT_rich Low_complexity Low_complexity 1 25 0 32 26 0 0 chr4 141706573 141706612 -42582050 + AT_rich Low_complexity Low_complexity 1 39 0 201 133 0 0 chr4 141707623 141707653 -42581009 + (CA)n Simple_repeat Simple_repeat 2 31 0 329 228 221 44 chr4 141708030 141708166 -42580496 - MIR SINE MIR -65 197 38 1870 234 38 110 chr4 141708380 141709199 -42579463 + LTR41 LTR ERVL 1 760 -13 311 0 26 0 chr4 141710964 141711003 -42577659 + (TG)n Simple_repeat Simple_repeat 2 41 0 23 0 0 0 chr4 141711373 141711396 -42577266 + AT_rich Low_complexity Low_complexity 1 23 0 598 237 24 72 chr4 141712090 141712297 -42576365 - MIR SINE MIR 0 262 66 315 322 0 0 chr4 141712545 141712635 -42576027 + L1MC4 LINE L1 6614 6703 -1339 * 328 302 0 10 chr4 141712589 141712685 -42575977 - L1MC4 LINE L1 -1339 6703 6609 3128 118 4 4 chr4 141712775 141713257 -42575405 - L1PA13 LINE L1 -4 6159 5678 237 276 67 9 chr4 141713688 141713793 -42574869 - L1ME4a LINE L1 -12 6109 5999 239 266 11 34 chr4 141714375 141714501 -42574161 - MIR SINE MIR 0 208 84 264 30 0 0 chr4 141715587 141715620 -42573042 + (TG)n Simple_repeat Simple_repeat 2 34 0 369 275 137 28 chr4 141715827 141716009 -42572653 - MIR3 SINE MIR -6 202 1 191 339 92 9 chr4 141716898 141717007 -42571655 - MIR SINE MIR -123 139 22 203 188 21 0 chr4 141717418 141717466 -42571196 + (TA)n Simple_repeat Simple_repeat 1 49 0 242 361 105 30 chr4 141717529 141717662 -42571000 - L2 LINE L2 -5 3267 3125 377 295 67 20 chr4 141717678 141717827 -42570835 + MIR SINE MIR 77 232 -30 411 315 21 14 chr4 141717966 141718109 -42570553 + MLT1K LTR MaLR 2 145 -443 491 273 155 6 chr4 141719053 141719214 -42569448 - MER5A DNA MER1_type 0 189 5 782 260 89 4 chr4 141719516 141719751 -42568911 - MIR SINE MIR 0 262 8 436 377 112 28 chr4 141719766 141720259 -42568403 + L2 LINE L2 1860 2393 -921 1067 291 39 9 chr4 141720331 141720668 -42567994 + LTR16C LTR ERVL 145 491 0 202 272 155 117 chr4 141720669 141720754 -42567908 + L2 LINE L2 2364 2444 -870 2278 100 10 0 chr4 141720754 141721064 -42567598 + AluSq SINE Alu 1 313 0 202 272 155 117 chr4 141721064 141721482 -42567180 + L2 LINE L2 2444 2886 -428 2494 63 0 10 chr4 141722432 141722733 -42565929 + AluY SINE Alu 1 298 -13 216 272 196 0 chr4 141722898 141722990 -42565672 - MIR3 SINE MIR -54 154 45 262 271 90 33 chr4 141724317 141724439 -42564223 - MIR3 SINE MIR -71 137 9 313 240 24 48 chr4 141725392 141725517 -42563145 - MLT1J2 LTR MaLR -1 449 328 656 82 0 0 chr4 141725571 141725669 -42562993 + AluY SINE Alu 213 310 -1 280 303 42 8 chr4 141725732 141725851 -42562811 - MLT1J2 LTR MaLR -255 195 73 1923 226 75 59 chr4 141727217 141727762 -42560900 - MLT2B3 LTR ERVL 0 554 1 2243 88 0 7 chr4 141728244 141728565 -42560097 - AluSg SINE Alu 0 319 1 234 174 0 0 chr4 141728808 141728854 -42559808 + T-rich Low_complexity Low_complexity 1 46 0 1262 246 63 57 chr4 141730427 141730926 -42557736 + MLT1H LTR MaLR 5 547 -2 303 93 0 0 chr4 141731286 141731329 -42557333 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 275 263 72 129 chr4 141731420 141731614 -42557048 - MER5A DNA MER1_type 0 189 7 923 204 69 19 chr4 141731757 141731973 -42556689 - L1MC4 LINE L1 -280 7762 7536 2969 226 19 34 chr4 141731973 141732760 -42555902 + L1MC4a LINE L1 6656 7430 -378 189 375 62 45 chr4 141732917 141733451 -42555211 - L2 LINE L2 -514 2800 2258 284 259 62 12 chr4 141733494 141733575 -42555087 - MIR SINE MIR -146 116 32 180 152 0 0 chr4 141734979 141735012 -42553650 + T-rich Low_complexity Low_complexity 1 33 0 460 261 39 33 chr4 141736232 141736385 -42552277 - MIR SINE MIR -2 260 107 180 0 0 0 chr4 141737936 141737956 -42550706 + (A)n Simple_repeat Simple_repeat 1 20 0 438 202 50 0 chr4 141738151 141738250 -42550412 - L1MA9 LINE L1 -35 6277 6174 275 274 32 0 chr4 141738711 141738773 -42549889 + L2 LINE L2 3209 3272 0 254 183 14 0 chr4 141739704 141739775 -42548887 + (TA)n Simple_repeat Simple_repeat 2 73 0 1408 140 219 38 chr4 141739816 141740159 -42548503 - MSTA LTR MaLR -23 405 1 223 353 75 30 chr4 141741494 141741695 -42546967 + L2 LINE L2 3009 3218 -95 270 250 15 0 chr4 141742213 141742281 -42546381 - MIR SINE MIR -64 144 76 387 276 32 32 chr4 141742390 141742546 -42546116 + MIR SINE MIR 107 262 0 456 281 23 8 chr4 141742960 141743088 -42545574 - L2 LINE L2 0 3313 3184 23 0 0 0 chr4 141743333 141743356 -42545306 + AT_rich Low_complexity Low_complexity 1 23 0 611 160 95 6 chr4 141743813 141743982 -42544680 + MER63 DNA MER1_type 63 246 -815 1041 205 19 5 chr4 141744012 141744227 -42544435 + MER63 DNA MER1_type 597 814 -247 199 354 34 61 chr4 141744251 141744398 -42544264 - L2 LINE L2 -38 3234 3092 298 309 133 12 chr4 141744440 141744605 -42544057 + MIR SINE MIR 57 241 -21 924 251 40 80 chr4 141744645 141744972 -42543690 - MLT1E LTR MaLR -279 314 1 2089 137 25 55 chr4 141745209 141745611 -42543051 - MLT1B LTR MaLR 0 390 1 257 326 41 95 chr4 141745953 141746245 -42542417 - L2 LINE L2 -78 3235 2970 1260 224 132 44 chr4 141746245 141746685 -42541977 + MLT2B1 LTR ERVL 1 488 -32 716 61 0 10 chr4 141746685 141746784 -42541878 + (TAGA)n Simple_repeat Simple_repeat 1 98 0 1260 224 132 44 chr4 141746784 141746821 -42541841 + MLT2B1 LTR ERVL 488 520 0 257 326 41 95 chr4 141746821 141746939 -42541723 - L2 LINE L2 -343 2970 2847 324 221 243 104 chr4 141746987 141747209 -42541453 + MIR SINE MIR 2 254 -8 278 345 90 14 chr4 141749854 141749999 -42538663 + MIR SINE MIR 48 203 -59 32 43 0 0 chr4 141750729 141750775 -42537887 + AT_rich Low_complexity Low_complexity 1 46 0 2602 179 110 144 chr4 141751003 141751616 -42537046 - L1MC3 LINE L1 0 7785 7144 266 205 39 26 chr4 141751616 141751694 -42536968 - MLT1F1 LTR MaLR -465 102 24 2602 179 110 144 chr4 141751694 141752108 -42536554 - L1MC3 LINE L1 -641 7144 6718 219 36 0 0 chr4 141752694 141752722 -42535940 + (TTA)n Simple_repeat Simple_repeat 3 30 0 838 56 0 0 chr4 141752724 141752832 -42535830 - L1PA6 LINE L1 -18 6136 6029 1562 196 0 14 chr4 141752874 141753208 -42535454 + AluSx SINE Alu 1 330 0 343 339 68 30 chr4 141753624 141753860 -42534802 - L2 LINE L2 -213 3059 2815 8416 212 80 58 chr4 141754251 141754390 -42534272 + L1MC3 LINE L1 3452 3586 -4199 1584 85 32 4 chr4 141754390 141754636 -42534026 - L1MA3 LINE L1 -5 6300 6048 8416 212 80 58 chr4 141754636 141757879 -42530783 + L1MC3 LINE L1 3586 6753 -1032 1344 161 109 44 chr4 141757879 141758153 -42530509 + AluJb SINE Alu 1 292 -20 8416 212 80 58 chr4 141758153 141758302 -42530360 + L1MC3 LINE L1 6753 6897 -888 180 77 0 0 chr4 141758302 141758328 -42530334 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 8416 212 80 58 chr4 141758328 141758386 -42530276 + L1MC3 LINE L1 6897 6952 -833 225 275 0 29 chr4 141758386 141758455 -42530207 + MLT1F1 LTR MaLR 45 111 -456 8416 212 80 58 chr4 141758455 141759023 -42529639 + L1MC3 LINE L1 6952 7782 -3 1958 149 0 10 chr4 141759666 141759967 -42528695 + AluJo SINE Alu 1 298 -14 204 40 0 0 chr4 141760719 141760744 -42527918 + (CA)n Simple_repeat Simple_repeat 2 26 0 324 274 32 0 chr4 141760789 141760913 -42527749 - L1MC4a LINE L1 -1942 5866 5739 384 312 35 24 chr4 141761046 141761229 -42527433 - L1MC4a LINE L1 -406 5715 5531 587 303 30 12 chr4 141761260 141761425 -42527237 - MIR SINE MIR -64 198 31 2346 94 0 0 chr4 141761524 141761832 -42526830 + AluY SINE Alu 1 308 -3 257 309 32 21 chr4 141762424 141762518 -42526144 + MER94 DNA DNA 39 133 -1 192 40 0 0 chr4 141762695 141762720 -42525942 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1596 150 59 4 chr4 141762723 141762996 -42525666 - AluSx SINE Alu -24 288 1 617 250 121 63 chr4 141763038 141763454 -42525208 + MLT1H LTR MaLR 52 547 -8 183 373 0 0 chr4 141763953 141764020 -42524642 - MIR SINE MIR -149 113 47 8196 230 67 42 chr4 141764838 141768539 -42520123 + L1MA4A LINE L1 10 3812 -3036 2377 95 0 0 chr4 141768539 141768843 -42519819 + AluY SINE Alu 1 304 -7 8196 230 67 42 chr4 141768843 141768906 -42519756 + L1MA4A LINE L1 3812 3872 -2976 2482 153 9 2 chr4 141768917 141769341 -42519321 + L1PA11 LINE L1 4226 4652 -1494 6293 82 13 22 chr4 141769341 141770257 -42518405 + L1PA11 LINE L1 5267 6174 0 * 10405 170 32 33 chr4 141770233 141770755 -42517907 + L1MA4A LINE L1 3852 4373 -2632 243 0 0 0 chr4 141770755 141770782 -42517880 + (CA)n Simple_repeat Simple_repeat 2 28 0 10405 170 32 33 chr4 141770782 141773413 -42515249 + L1MA4A LINE L1 4373 7005 0 340 328 9 56 chr4 141773869 141774101 -42514561 - L1ME4a LINE L1 -157 5964 5744 23 0 0 0 chr4 141774479 141774502 -42514160 + AT_rich Low_complexity Low_complexity 1 23 0 343 182 0 102 chr4 141775373 141775461 -42513201 + L2 LINE L2 3225 3303 -10 42 57 0 0 chr4 141776032 141776102 -42512560 + AT_rich Low_complexity Low_complexity 1 70 0 720 211 53 21 chr4 141776762 141776895 -42511767 + MER3 DNA MER1_type 13 155 -54 2291 125 34 0 chr4 141776895 141777247 -42511415 + THE1B LTR MaLR 1 364 0 720 211 53 21 chr4 141777247 141777303 -42511359 + MER3 DNA MER1_type 155 208 -1 190 400 0 0 chr4 141777465 141777525 -42511137 + MIR SINE MIR 64 123 -85 2522 157 7 16 chr4 141777796 141778228 -42510434 - MSTA LTR MaLR 0 428 1 2179 95 0 74 chr4 141778483 141778820 -42509842 - AluSx SINE Alu 0 312 1 385 241 0 19 chr4 141779111 141779219 -42509443 + Charlie7 DNA MER1_type 45 150 -2462 1696 211 25 22 chr4 141779262 141779431 -42509231 - MLT1A1 LTR MaLR 0 365 198 478 101 13 38 chr4 141779431 141779510 -42509152 - MADE1 DNA Mariner 0 80 4 1696 211 25 22 chr4 141779510 141779704 -42508958 - MLT1A1 LTR MaLR -167 198 1 1061 291 83 29 chr4 141779704 141780151 -42508511 + MLT1J LTR MaLR 41 511 0 405 194 0 0 chr4 141780894 141780966 -42507696 + L1 LINE L1 4753 4824 -1322 577 130 46 37 chr4 141780966 141781094 -42507568 + AluSg/x SINE Alu 175 303 0 2929 154 30 7 chr4 141781097 141781966 -42506696 + L1P5 LINE L1 4826 5716 -440 1088 198 47 88 chr4 141781989 141782328 -42506334 - MER4D LTR ERV1 -30 873 549 1140 174 14 42 chr4 141782363 141782576 -42506086 - MER49 LTR ERV1 -629 294 88 21 0 0 0 chr4 141833609 141833630 -42455032 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 141833994 141834015 -42454647 + AT_rich Low_complexity Low_complexity 1 21 0 773 240 0 0 chr4 141834609 141834763 -42453899 + AluJb SINE Alu 137 290 -22 207 0 0 0 chr4 141836555 141836578 -42452084 + (A)n Simple_repeat Simple_repeat 1 23 0 3752 122 58 65 chr4 141837509 141838199 -42450463 + LTR8 LTR ERV1 1 685 -6 24 0 0 0 chr4 141840324 141840348 -42448314 + AT_rich Low_complexity Low_complexity 1 24 0 333 308 103 27 chr4 141840818 141840964 -42447698 + MIR3 SINE MIR 41 197 -11 546 145 0 0 chr4 141841110 141841193 -42447469 - MER39B LTR ERV1 0 653 571 738 126 0 0 chr4 141841414 141841525 -42447137 + FLAM_C SINE Alu 1 111 -32 437 238 27 48 chr4 141841551 141841698 -42446964 + LTR23-int LTR ERV1 1620 1763 -3117 286 266 0 0 chr4 141841698 141841762 -42446900 + tRNA-Glu-GAG tRNA tRNA 10 73 -2 553 192 29 6 chr4 141841762 141841904 -42446758 + LTR23-int LTR ERV1 969 1659 -4672 303 49 0 0 chr4 141841910 141841951 -42446711 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 988 270 79 38 chr4 141842027 141842345 -42446317 + LTR23-int LTR ERV1 1966 2296 -4035 477 177 17 21 chr4 141842329 141842440 -42446222 + LTR23-int LTR ERV1 2646 2725 -3221 * 253 185 0 56 chr4 141842433 141842487 -42446175 + LTR23-int LTR ERV1 955 1005 -4118 * 369 0 0 0 chr4 141842487 141842528 -42446134 + (A)n Simple_repeat Simple_repeat 1 41 0 642 129 0 0 chr4 141843038 141843131 -42445531 - MER49 LTR ERV1 -830 93 1 867 170 41 26 chr4 141843152 141843346 -42445316 - LTR48 LTR ERV1 -1 786 590 1554 188 63 91 chr4 141843408 141843870 -42444792 - LTR48 LTR ERV1 -338 449 1 407 248 0 0 chr4 141843870 141843971 -42444691 - L1ME LINE L1 -689 5481 5381 2613 161 9 2 chr4 141843971 141844418 -42444244 + L1PB4 LINE L1 5704 6153 -3 22 35 0 0 chr4 141845261 141845290 -42443372 + AT_rich Low_complexity Low_complexity 1 29 0 4573 176 27 24 chr4 141845439 141846194 -42442468 + L1MB1 LINE L1 4528 5279 -889 270 0 0 0 chr4 141846194 141846224 -42442438 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 4573 176 27 24 chr4 141846224 141847095 -42441567 + L1MB1 LINE L1 5279 6161 -7 216 337 35 0 chr4 141847241 141847327 -42441335 - MIR3 SINE MIR 0 208 120 3855 154 36 0 chr4 141847334 141847994 -42440668 + L1PA15 LINE L1 5480 6163 -2 433 248 18 0 chr4 141848194 141848303 -42440359 + L1ME1 LINE L1 6022 6132 -34 208 333 85 45 chr4 141848857 141849034 -42439628 + MIR SINE MIR 6 189 -73 256 139 38 89 chr4 141849042 141849121 -42439541 + L1MA4A LINE L1 6222 6296 -7 619 293 59 21 chr4 141849140 141849379 -42439283 - MIR SINE MIR 0 262 15 462 177 115 18 chr4 141850147 141850260 -42438402 - L1MB8 LINE L1 0 6178 6055 188 288 18 72 chr4 141850482 141850593 -42438069 + L2 LINE L2 2531 2635 -679 291 243 40 0 chr4 141850811 141850885 -42437777 + MLT1E3 LTR MaLR 2 78 -576 7660 25 0 0 chr4 141850890 141851824 -42436838 - L1PA3 LINE L1 -3 6152 5218 14017 31 1 1 chr4 141851824 141853505 -42435157 + L1PA3 LINE L1 3514 5193 -953 1802 252 49 18 chr4 141853505 141854055 -42434607 + MLT1E3 LTR MaLR 48 615 -9 7361 30 1 0 chr4 141854487 141855360 -42433302 - L1P LINE L1 -1909 4237 3364 4621 18 0 7 chr4 141855360 141855895 -42432767 + L1PA2 LINE L1 5616 6155 0 183 303 61 15 chr4 141856327 141856393 -42432269 + L3 LINE CR1 1369 1437 -140 220 195 0 0 chr4 141856809 141856850 -42431812 + (TG)n Simple_repeat Simple_repeat 1 41 0 285 353 85 32 chr4 141857370 141857653 -42431009 + MLT1K LTR MaLR 278 575 -13 31 26 0 0 chr4 141857675 141857713 -42430949 + AT_rich Low_complexity Low_complexity 1 38 0 417 307 98 37 chr4 141858277 141859168 -42429494 + L1ME3A LINE L1 668 1596 -4619 1273 226 42 45 chr4 141859169 141859549 -42429113 - LTR47B LTR ERVL -64 379 1 1926 134 3 18 chr4 141859549 141859877 -42428785 + L1MA4 LINE L1 5788 6110 -190 355 328 54 29 chr4 141859933 141860137 -42428525 + L1ME3A LINE L1 1868 2076 -4320 26 0 0 0 chr4 141860237 141860263 -42428399 + AT_rich Low_complexity Low_complexity 1 26 0 787 285 50 25 chr4 141860330 141860811 -42427851 + L1ME3A LINE L1 2316 2808 -3407 331 306 78 53 chr4 141860871 141861116 -42427546 + L1ME3A LINE L1 3046 3296 -2919 964 180 12 0 chr4 141861193 141861354 -42427308 + AluJb SINE Alu 129 291 -21 1279 311 86 20 chr4 141861390 141862243 -42426419 + L1ME3A LINE L1 3413 4321 -1894 6314 97 7 2 chr4 141862274 141863194 -42425468 + L1PA14 LINE L1 5236 6159 -2 1977 132 70 12 chr4 141863279 141863620 -42425042 + THE1C LTR MaLR 15 375 0 329 294 39 6 chr4 141863629 141863809 -42424853 + L1ME3A LINE L1 4452 4637 -1578 24 77 0 0 chr4 141864131 141864183 -42424479 + AT_rich Low_complexity Low_complexity 1 52 0 5835 187 23 9 chr4 141864349 141865861 -42422801 - L1MC1 LINE L1 -6 6327 4788 2400 79 0 10 chr4 141865861 141866165 -42422497 - AluY SINE Alu -10 301 1 1922 253 75 8 chr4 141866176 141866839 -42421823 - L1MC1 LINE L1 -2075 4071 3364 251 268 107 9 chr4 141866842 141866954 -42421708 + MER114 LTR ERV 144 266 -382 494 325 83 3 chr4 141867459 141867807 -42420855 + L1ME3A LINE L1 4643 5018 -1197 23 0 0 0 chr4 141867936 141867959 -42420703 + AT_rich Low_complexity Low_complexity 1 23 0 1634 263 13 28 chr4 141868027 141868567 -42420095 + L1ME3A LINE L1 5349 5880 -359 21 26 0 26 chr4 141868574 141868600 -42420062 + AT_rich Low_complexity Low_complexity 1 27 -11 9766 40 0 0 chr4 141868600 141870543 -42418119 - L1PA5 LINE L1 -11 6143 4198 21 26 0 26 chr4 141870543 141870555 -42418107 + AT_rich Low_complexity Low_complexity 27 38 0 246 280 120 23 chr4 141870744 141870919 -42417743 + L1ME3A LINE L1 6034 6225 -14 1680 174 14 11 chr4 141871238 141871547 -42417115 + AluJo SINE Alu 1 310 0 527 148 0 19 chr4 141871549 141871657 -42417005 + (GGA)n Simple_repeat Simple_repeat 3 108 0 1601 133 48 78 chr4 141871937 141872246 -42416416 + AluSx SINE Alu 4 303 -9 666 282 62 10 chr4 141872700 141873143 -42415519 + MLT1J LTR MaLR 19 510 -1 729 277 24 5 chr4 141873322 141873535 -42415127 + L1ME1 LINE L1 5945 6161 -5 1193 277 76 63 chr4 141873589 141874142 -42414520 + HAL1 LINE L1 1354 1913 -594 636 277 83 48 chr4 141874171 141874651 -42414011 + HAL1 LINE L1 2009 2505 -2 334 339 104 22 chr4 141874967 141875197 -42413465 + MIR SINE MIR 8 256 -6 35698 102 7 13 chr4 141875521 141881704 -42406958 + L1PA6 LINE L1 11 6154 0 1559 155 101 19 chr4 141883345 141883662 -42405000 + MER61A LTR ERV1 1 343 0 347 190 51 0 chr4 141883662 141883741 -42404921 + MER61A-int LTR ERV1 1 83 -5134 1881 155 114 18 chr4 141883841 141884235 -42404427 + MER61A-int LTR ERV1 346 777 -4440 * 19859 118 42 21 chr4 141884228 141886286 -42402376 + MER61A-int LTR ERV1 1320 3691 -1526 2252 86 0 23 chr4 141886286 141886589 -42402073 + AluY SINE Alu 1 296 -15 19859 118 42 21 chr4 141886589 141888149 -42400513 + MER61A-int LTR ERV1 3691 5217 0 1313 129 208 41 chr4 141888149 141888443 -42400219 + MER61A LTR ERV1 1 343 0 304 300 55 0 chr4 141888525 141888635 -42400027 + L3b LINE CR1 1288 1403 -180 2294 85 7 7 chr4 141889120 141889427 -42399235 + AluY SINE Alu 1 307 -4 262 263 53 18 chr4 141889659 141889779 -42398883 + MLT1I LTR MaLR 51 172 -237 420 250 40 47 chr4 141889781 141889929 -42398733 + MLT1J2 LTR MaLR 229 375 -75 23 54 0 0 chr4 141890847 141890884 -42397778 + AT_rich Low_complexity Low_complexity 1 37 0 30 59 0 0 chr4 141891777 141891828 -42396834 + AT_rich Low_complexity Low_complexity 1 51 0 22 35 0 0 chr4 141891854 141891883 -42396779 + AT_rich Low_complexity Low_complexity 1 29 0 2011 173 9 0 chr4 141891986 141892328 -42396334 - MER7A DNA MER2_type -1 345 3 2460 77 0 6 chr4 141892379 141892691 -42395971 + AluY SINE Alu 1 310 -1 314 242 180 5 chr4 141892702 141892913 -42395749 + L1ME4a LINE L1 5640 5887 -234 294 281 0 0 chr4 141892965 141892985 -42395677 + (TATATG)n Simple_repeat Simple_repeat 3 22 -62 1328 187 133 7 chr4 141892985 141893285 -42395377 - MER44D DNA MER2_type 0 609 2 294 281 0 0 chr4 141893285 141893346 -42395316 + (TATATG)n Simple_repeat Simple_repeat 21 84 0 23 68 0 0 chr4 141893670 141893714 -42394948 + AT_rich Low_complexity Low_complexity 1 44 0 231 114 0 0 chr4 141893808 141893843 -42394819 + (TG)n Simple_repeat Simple_repeat 2 36 0 327 331 156 13 chr4 141894640 141894794 -42393868 + MIR SINE MIR 17 192 -70 8011 164 47 10 chr4 141895048 141895935 -42392727 + L1MA8 LINE L1 3470 4444 -1702 2219 104 0 25 chr4 141895935 141896253 -42392409 + AluY SINE Alu 1 310 -1 8011 164 47 10 chr4 141896253 141896964 -42391698 + L1MA8 LINE L1 4444 5127 -1019 795 118 15 7 chr4 141896976 141897112 -42391550 + L1MA8 LINE L1 5464 5600 -691 488 214 16 61 chr4 141897120 141897329 -42391333 + Tigger7 DNA MER2_type 1 267 -2220 * 492 200 32 0 chr4 141897328 141897423 -42391239 + Tigger7 DNA MER2_type 2394 2491 0 3232 172 13 22 chr4 141897423 141898105 -42390557 + L1MA8 LINE L1 5606 6281 -10 236 282 84 46 chr4 141898576 141898707 -42389955 + L2 LINE L2 2898 3033 -239 580 321 22 0 chr4 141898737 141898921 -42389741 + ERVL LTR ERVL 4771 4958 -806 3140 224 61 15 chr4 141898932 141899594 -42389068 - L1ME1 LINE L1 -4 6162 5532 189 0 0 0 chr4 141899594 141899615 -42389047 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3140 224 61 15 chr4 141899615 141900468 -42388194 - L1ME1 LINE L1 -634 5532 4577 748 295 95 43 chr4 141901091 141901460 -42387202 + LTR16A LTR ERVL 46 433 -17 196 351 0 0 chr4 141901481 141901538 -42387124 - MER5B DNA MER1_type -60 118 62 18795 97 3 0 chr4 141901646 141905166 -42383496 + L1PA7 LINE L1 2591 6149 -5 428 222 27 97 chr4 141905554 141905739 -42382923 + MIR3 SINE MIR 35 206 -2 513 239 87 0 chr4 141906543 141906727 -42381935 + MER20B DNA MER1_type 543 742 -41 244 275 25 0 chr4 141908729 141908809 -42379853 + GA-rich Low_complexity Low_complexity 1 82 0 279 79 0 0 chr4 141909428 141909466 -42379196 + (TC)n Simple_repeat Simple_repeat 1 38 0 459 0 0 0 chr4 141911081 141911132 -42377530 + (A)n Simple_repeat Simple_repeat 1 51 0 244 100 25 0 chr4 141911137 141911177 -42377485 + MER34C LTR ERV1 176 216 -369 1501 191 41 119 chr4 141911325 141911690 -42376972 + MER41-int LTR ERV1 1827 2219 -3727 2257 120 3 0 chr4 141911690 141911999 -42376663 + AluSx SINE Alu 3 312 0 1501 191 41 119 chr4 141911999 141912342 -42376320 + MER41-int LTR ERV1 2219 3225 -2721 26 0 0 0 chr4 141912986 141913012 -42375650 + AT_rich Low_complexity Low_complexity 1 26 0 487 91 13 0 chr4 141913401 141913478 -42375184 + LTR49 LTR ERV1 1 78 -517 2856 290 105 35 chr4 141915940 141916197 -42372465 + L2 LINE L2 636 874 -2440 2187 200 104 78 chr4 141916197 141916867 -42371795 + MER76 LTR ERV 1 688 0 2856 290 105 35 chr4 141916867 141917784 -42370878 + L2 LINE L2 874 1892 -1422 238 317 100 8 chr4 141918540 141918660 -42370002 - LTR67 LTR ERVL 0 557 427 2424 70 3 19 chr4 141920040 141920355 -42368307 + AluSp SINE Alu 1 310 -3 421 308 15 8 chr4 141920550 141920680 -42367982 + MIR SINE MIR 21 151 -111 245 334 159 34 chr4 141922094 141923056 -42365606 + L2 LINE L2 1427 2526 -788 369 0 0 0 chr4 141923056 141923097 -42365565 + (CA)n Simple_repeat Simple_repeat 2 42 0 245 334 159 34 chr4 141923097 141923161 -42365501 + L2 LINE L2 2526 2581 -733 459 312 65 17 chr4 141923200 141923431 -42365231 + MIR SINE MIR 5 246 -16 406 328 136 12 chr4 141923431 141923952 -42364710 + L2 LINE L2 2613 3204 -68 287 242 18 158 chr4 141924284 141924449 -42364213 - MER102a DNA MER1_type 0 330 189 2206 122 144 5 chr4 141924993 141925369 -42363293 + MSTA LTR MaLR 1 428 0 9111 168 31 16 chr4 141925369 141926990 -42361672 + MSTA-int LTR MaLR 1 1646 -5 1908 146 179 0 chr4 141926995 141927358 -42361304 + MSTA LTR MaLR 1 428 0 235 263 18 0 chr4 141927585 141927642 -42361020 - L2 LINE L2 0 3313 3256 284 265 102 14 chr4 141928042 141928189 -42360473 - MER112 DNA MER1_type -3 257 98 245 309 99 61 chr4 141928283 141928545 -42360117 + L2 LINE L2 1838 2109 -1205 716 273 84 34 chr4 141928793 141929090 -42359572 + L2 LINE L2 3002 3313 0 1602 188 67 50 chr4 141929212 141929363 -42359299 + MLT1A1 LTR MaLR 1 148 -217 1913 171 0 0 chr4 141929363 141929672 -42358990 + AluSx SINE Alu 1 309 -3 1602 188 67 50 chr4 141929672 141929861 -42358801 + MLT1A1 LTR MaLR 148 347 -18 417 257 33 66 chr4 141930419 141930571 -42358091 - MIR SINE MIR -70 192 46 612 309 170 25 chr4 141930678 141930995 -42357667 - L2 LINE L2 -778 2536 2174 209 319 129 25 chr4 141930998 141931161 -42357501 - L2 LINE L2 -1387 1927 1748 556 187 13 77 chr4 141931603 141931758 -42356904 + MER103 DNA DNA 7 151 -15 745 220 54 16 chr4 141932819 141933005 -42355657 + MER3 DNA MER1_type 1 193 -16 1625 284 93 13 chr4 141933296 141933835 -42354827 - MLT1G1 LTR MaLR -1 594 13 446 209 64 27 chr4 141934410 141934520 -42354142 + MLT1H LTR MaLR 148 261 -288 205 267 48 76 chr4 141934609 141934714 -42353948 - MIR SINE MIR -57 205 104 480 265 82 55 chr4 141934865 141935084 -42353578 - MIR SINE MIR -1 261 37 3273 60 0 0 chr4 141935084 141935499 -42353163 + L1PA6 LINE L1 5739 6153 -1 1893 158 3 3 chr4 141936919 141937222 -42351440 - AluJb SINE Alu -9 303 1 1116 203 114 29 chr4 141937995 141938311 -42350351 + MER2 DNA MER2_type 2 344 0 348 83 0 0 chr4 141938311 141938359 -42350303 + (TA)n Simple_repeat Simple_repeat 1 48 0 441 0 0 0 chr4 141938360 141938409 -42350253 + (TC)n Simple_repeat Simple_repeat 2 50 0 180 0 0 0 chr4 141938408 141938428 -42350234 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 383 121 0 0 chr4 141938430 141938488 -42350174 - Alu SINE Alu 0 302 245 312 27 0 0 chr4 141938492 141938529 -42350133 + (TG)n Simple_repeat Simple_repeat 1 37 0 2376 66 0 3 chr4 141939139 141939428 -42349234 + AluSc SINE Alu 1 288 -21 192 200 0 0 chr4 141939698 141939738 -42348924 + (TA)n Simple_repeat Simple_repeat 1 40 0 23 68 0 0 chr4 141942525 141942569 -42346093 + AT_rich Low_complexity Low_complexity 1 44 0 350 230 91 75 chr4 141944379 141944566 -42344096 + MIR SINE MIR 73 262 0 225 357 139 0 chr4 141944946 141945075 -42343587 - L2 LINE L2 -8 3264 3118 1783 169 11 0 chr4 141945197 141945476 -42343186 + AluJb SINE Alu 1 282 -30 1623 201 47 94 chr4 141945997 141946485 -42342177 + MLT1C LTR MaLR 1 465 -2 1850 179 53 3 chr4 141946577 141946896 -42341766 - MER1B DNA MER1_type -2 335 1 1408 115 0 18 chr4 141948567 141948785 -42339877 - L1PA10 LINE L1 -5 6163 5950 32 26 0 0 chr4 141949916 141949955 -42338707 + AT_rich Low_complexity Low_complexity 1 39 0 1832 281 91 24 chr4 141950047 141951610 -42337052 + L1ME3A LINE L1 4239 5919 -251 1602 218 54 5 chr4 141951610 141951982 -42336680 + MLT1B LTR MaLR 1 390 0 1832 281 91 24 chr4 141951982 141951994 -42336668 + L1ME3A LINE L1 5919 5929 -241 460 278 26 13 chr4 141952008 141952159 -42336503 + L1ME3A LINE L1 5983 6135 -35 207 0 0 0 chr4 141952236 141952259 -42336403 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2062 117 4 0 chr4 141952261 141952542 -42336120 - AluSq SINE Alu -31 282 1 524 275 79 4 chr4 141953041 141953257 -42335405 - MIR SINE MIR -36 226 3 387 0 0 0 chr4 141953522 141953565 -42335097 + (CA)n Simple_repeat Simple_repeat 2 44 0 441 273 167 0 chr4 141953673 141953823 -42334839 + MER5A DNA MER1_type 9 183 -6 4131 29 0 0 chr4 141954055 141954544 -42334118 - L1PA4 LINE L1 -1653 4493 4005 7624 27 6 0 chr4 141954544 141956219 -42332443 + L1PA4 LINE L1 4473 6155 0 871 316 113 48 chr4 141957940 141958727 -42329935 + L1MEd LINE L1 414 1149 -5381 2297 167 55 2 chr4 141958727 141959128 -42329534 - MSTB LTR MaLR 0 426 5 871 316 113 48 chr4 141959128 141959210 -42329452 + L1MEd LINE L1 1149 1224 -5306 30 0 0 0 chr4 141959210 141959240 -42329422 + AT_rich Low_complexity Low_complexity 1 30 0 871 316 113 48 chr4 141959240 141959416 -42329246 + L1MEd LINE L1 1224 1558 -4972 295 203 78 0 chr4 141959435 141959499 -42329163 - MER96 DNA MER1_type? 0 175 107 444 281 134 36 chr4 141959726 141960061 -42328601 + LTR16A1 LTR ERVL 90 457 0 415 352 97 18 chr4 141960088 141960379 -42328283 + L1MEd LINE L1 1785 2141 -4461 2911 272 64 77 chr4 141960662 141962975 -42325687 + L1MEc LINE L1 37 2378 -3837 837 236 61 9 chr4 141962975 141963187 -42325475 + MER58A DNA MER1_type 2 224 0 2911 272 64 77 chr4 141963187 141963798 -42324864 + L1MEc LINE L1 2378 2857 -3358 7341 98 3 5 chr4 141963798 141965630 -42323032 + L1PA7 LINE L1 4318 6150 -4 2911 272 64 77 chr4 141965630 141966350 -42322312 + L1MEc LINE L1 2857 3585 -2630 1659 194 3 0 chr4 141966457 141966741 -42321921 + AluSx SINE Alu 1 285 -27 205 152 76 0 chr4 141966741 141966807 -42321855 + (TA)n Simple_repeat Simple_repeat 1 71 0 214 103 84 19 chr4 141966818 141966925 -42321737 + (TA)n Simple_repeat Simple_repeat 2 115 0 21 0 0 0 chr4 141967326 141967347 -42321315 + AT_rich Low_complexity Low_complexity 1 21 0 225 278 57 74 chr4 141968898 141969074 -42319588 + L3b LINE CR1 1216 1388 -195 213 210 284 25 chr4 141972547 141972628 -42316034 + MIR SINE MIR 96 197 -65 1059 280 153 12 chr4 141973619 141974051 -42314611 + MLT1L LTR MaLR 119 611 -4 435 328 98 19 chr4 141974402 141974655 -42314007 + L3 LINE CR1 748 1020 -557 278 336 13 74 chr4 141974655 141974697 -42313965 + MER5B DNA MER1_type 4 47 -131 4051 154 46 31 chr4 141974697 141975506 -42313156 - L1MC1 LINE L1 -1 6332 5512 278 336 13 74 chr4 141975506 141975612 -42313050 + MER5B DNA MER1_type 47 143 -35 1050 315 47 57 chr4 141975630 141976205 -42312457 + L3 LINE CR1 1003 1571 -6 1993 143 0 0 chr4 141976278 141976578 -42312084 + AluSx SINE Alu 1 300 -12 300 272 154 50 chr4 141976628 141976813 -42311849 - MIR SINE MIR -19 243 39 187 333 0 48 chr4 141977241 141977325 -42311337 + L2 LINE L2 3234 3313 0 208 286 0 0 chr4 141977336 141977385 -42311277 - MIR SINE MIR -138 124 76 270 0 0 0 chr4 141977433 141977463 -42311199 + (A)n Simple_repeat Simple_repeat 1 30 0 298 280 14 133 chr4 141978344 141978555 -42310107 + L2 LINE L2 2895 3080 -192 1410 196 37 55 chr4 141980412 141980739 -42307923 + MLT1A1 LTR MaLR 40 360 -5 205 259 0 37 chr4 141980743 141980797 -42307865 + MIR SINE MIR 85 136 -72 1758 120 53 50 chr4 141983984 141984285 -42304377 - AluSx SINE Alu -10 302 1 291 349 59 26 chr4 141984566 141984718 -42303944 - MIR3 SINE MIR -49 159 3 511 253 32 44 chr4 141985037 141985195 -42303467 + MIR SINE MIR 3 158 -104 479 304 129 36 chr4 141985196 141985505 -42303157 - LTR16C LTR ERVL 0 491 154 402 233 19 10 chr4 141985693 141985796 -42302866 + MIR SINE MIR 159 262 0 184 333 30 0 chr4 141986043 141986109 -42302553 - L2 LINE L2 -217 3055 2988 360 250 12 0 chr4 141986182 141986266 -42302396 + MIR SINE MIR 153 237 -25 240 333 0 52 chr4 141986265 141986361 -42302301 - L2 LINE L2 -299 2973 2883 * 211 409 26 7 chr4 141986532 141986686 -42301976 - L2 LINE L2 -634 2680 2524 2032 143 3 0 chr4 141987241 141987541 -42301121 + AluSx SINE Alu 1 301 -11 23 54 0 0 chr4 141987902 141987939 -42300723 + AT_rich Low_complexity Low_complexity 1 37 0 970 296 78 69 chr4 141988726 141989263 -42299399 - L2 LINE L2 -337 2977 2436 571 231 65 24 chr4 141989618 141989787 -42298875 - L2 LINE L2 -939 2375 2200 1932 140 6 22 chr4 141990371 141990685 -42297977 + AluSx SINE Alu 1 309 -3 22 0 0 0 chr4 141990817 141990839 -42297823 + AT_rich Low_complexity Low_complexity 1 22 0 202 200 0 0 chr4 141991067 141991102 -42297560 + (CA)n Simple_repeat Simple_repeat 2 36 0 495 294 56 6 chr4 141993139 141993319 -42295343 - L3 LINE CR1 -150 1427 1239 3293 190 77 8 chr4 141993468 141994198 -42294464 - L1MC3 LINE L1 -1 7784 7005 244 175 0 53 chr4 141994190 141994247 -42294415 - L1M LINE L1 -937 5407 5354 * 354 143 0 0 chr4 141994247 141994310 -42294352 + (TCCCC)n Simple_repeat Simple_repeat 2 64 0 736 159 0 0 chr4 141994310 141994423 -42294239 - FLAM_C SINE Alu -19 124 12 262 160 170 53 chr4 141994427 141994521 -42294141 - L1M LINE L1 -977 5367 5263 462 18 0 0 chr4 141995350 141995405 -42293257 + (TG)n Simple_repeat Simple_repeat 2 56 0 465 329 160 5 chr4 141995574 141995793 -42292869 - MIR SINE MIR -8 254 2 363 260 138 39 chr4 141995800 141995981 -42292681 + HAL1 LINE L1 996 1194 -1313 623 301 134 27 chr4 141996067 141996545 -42292117 + HAL1 LINE L1 1384 1912 -595 301 250 8 76 chr4 141996890 141997022 -42291640 + HAL1b LINE L1 747 869 -479 288 111 0 0 chr4 141997306 141997351 -42291311 + (TG)n Simple_repeat Simple_repeat 2 46 0 23 54 0 0 chr4 141997523 141997560 -42291102 + AT_rich Low_complexity Low_complexity 1 37 0 735 198 69 10 chr4 141997754 141997956 -42290706 - L1M4 LINE L1 -2077 4069 3856 218 361 0 14 chr4 141998019 141998091 -42290571 - L3 LINE CR1 -1469 108 38 281 238 100 0 chr4 141998421 141998501 -42290161 + MER69 DNA AcHobo 1 88 -2438 522 235 40 20 chr4 141998621 141998770 -42289892 + MER69 DNA AcHobo 2373 2524 -2 1589 232 163 16 chr4 141999106 141999623 -42289039 + MLT1E LTR MaLR 1 593 0 863 218 29 12 chr4 141999850 142000020 -42288642 - MER45A DNA AcHobo 0 178 6 228 290 154 31 chr4 142000040 142000202 -42288460 + MIR SINE MIR 78 259 -3 207 277 0 15 chr4 142001704 142001769 -42286893 + GA-rich Low_complexity Low_complexity 3 66 0 2122 113 0 7 chr4 142002507 142002808 -42285854 + AluSg1 SINE Alu 1 299 -10 318 336 27 0 chr4 142003407 142003517 -42285145 + L3 LINE CR1 1345 1457 -120 26 0 0 0 chr4 142003949 142003975 -42284687 + AT_rich Low_complexity Low_complexity 1 26 0 6618 20 0 0 chr4 142003975 142004732 -42283930 - L1PA3 LINE L1 -3 6152 5396 5672 22 1 0 chr4 142004728 142005409 -42283253 + L1PA3 LINE L1 4714 5395 -751 * 4010 241 47 27 chr4 142005993 142006071 -42282591 + L1MCb LINE L1 4 79 -6485 1946 141 0 0 chr4 142006071 142006402 -42282260 + AluSx SINE Alu 1 331 0 4010 241 47 27 chr4 142006402 142008007 -42280655 + L1MCb LINE L1 79 1718 -4846 3402 181 120 96 chr4 142008005 142008480 -42280182 + L1MC3 LINE L1 6610 7072 -713 * 281 289 13 0 chr4 142008480 142008556 -42280106 + MLT1F1 LTR MaLR 35 111 -456 3402 181 120 96 chr4 142008556 142009146 -42279516 + L1MC3 LINE L1 7072 7777 -8 1569 205 97 6 chr4 142009186 142009547 -42279115 + MSTD LTR MaLR 3 396 0 1858 119 3 3 chr4 142010463 142010749 -42277913 - L1PB1 LINE L1 0 6151 5866 7258 174 20 9 chr4 142010864 142012580 -42276082 + L1P5 LINE L1 3772 5508 -643 203 0 0 36 chr4 142012649 142012677 -42275985 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 25 0 0 0 chr4 142012712 142012737 -42275925 + AT_rich Low_complexity Low_complexity 1 25 0 183 80 0 0 chr4 142013302 142013327 -42275335 + (CATTT)n Simple_repeat Simple_repeat 3 27 0 827 174 45 19 chr4 142014087 142014242 -42274420 + AluJo SINE Alu 121 279 -33 24 32 0 0 chr4 142014242 142014273 -42274389 + AT_rich Low_complexity Low_complexity 1 31 0 437 248 40 0 chr4 142014409 142014534 -42274128 - L1ME4a LINE L1 -234 5887 5758 208 331 48 97 chr4 142015269 142015393 -42273269 + L2 LINE L2 3147 3264 -8 858 231 49 23 chr4 142015688 142016038 -42272624 + L1ME3A LINE L1 4263 4621 -1525 255 191 0 0 chr4 142016051 142016119 -42272543 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 673 242 123 70 chr4 142016119 142016764 -42271898 + L1ME3A LINE L1 4631 5309 -837 404 293 104 19 chr4 142016953 142017223 -42271439 + L1ME3A LINE L1 5659 5951 -219 339 327 128 0 chr4 142017531 142017687 -42270975 + MIR SINE MIR 86 261 -1 933 127 0 0 chr4 142017903 142018062 -42270600 + AluSp/q SINE Alu 161 319 0 213 182 0 0 chr4 142018090 142018123 -42270539 + (CAG)n Simple_repeat Simple_repeat 1 33 0 1534 139 122 57 chr4 142018498 142018850 -42269812 + THE1C LTR MaLR 1 375 0 406 131 0 0 chr4 142018857 142018918 -42269744 + FLAM_A SINE Alu 41 101 -41 4196 39 10 0 chr4 142019018 142019882 -42268780 - L1P2 LINE L1 -428 5727 4859 1557 117 4 4 chr4 142019877 142020107 -42268555 + L1P LINE L1 10 239 -5907 * 1754 190 69 96 chr4 142020207 142020727 -42267935 - MER45B DNA AcHobo -322 718 213 336 237 32 21 chr4 142020737 142020830 -42267832 - MER45B DNA AcHobo -933 107 14 659 96 0 0 chr4 142021281 142021364 -42267298 + MSTA LTR MaLR 135 217 -147 1949 53 4 25 chr4 142021388 142021632 -42267030 + AluY SINE Alu 10 248 -63 748 107 0 0 chr4 142021732 142021835 -42266827 + MSTA LTR MaLR 326 428 0 5182 65 3 3 chr4 142022000 142022660 -42266002 + PABL_A LTR ERV1 1 660 0 24 85 0 0 chr4 142023378 142023437 -42265225 + AT_rich Low_complexity Low_complexity 1 59 0 230 293 114 7 chr4 142023450 142023590 -42265072 - L1ME4a LINE L1 -10 6111 5957 297 283 19 9 chr4 142023796 142023902 -42264760 - L1ME4a LINE L1 -401 5720 5614 745 333 69 42 chr4 142025033 142025133 -42263529 - L2 LINE L2 -641 2673 2577 1873 150 35 62 chr4 142025133 142025534 -42263128 + MLT1B LTR MaLR 1 390 0 745 333 69 42 chr4 142025534 142025880 -42262782 - L2 LINE L2 -737 2577 2215 320 178 79 40 chr4 142026089 142026190 -42262472 + MLT1L LTR MaLR 125 229 -386 23 33 0 0 chr4 142026657 142026687 -42261975 + AT_rich Low_complexity Low_complexity 1 30 0 2324 96 3 10 chr4 142026773 142027087 -42261575 + AluSx SINE Alu 1 312 0 293 325 5 44 chr4 142027555 142027695 -42260967 + L1P LINE L1 3609 3753 -2393 1855 109 0 8 chr4 142027695 142027943 -42260719 + AluSx SINE Alu 35 280 -32 405 0 0 0 chr4 142027943 142027988 -42260674 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 293 325 5 44 chr4 142027988 142028052 -42260610 + L1P LINE L1 3751 3806 -2340 504 318 117 47 chr4 142028102 142028552 -42260110 + L2 LINE L2 2709 3204 -109 2041 141 0 0 chr4 142028552 142028850 -42259812 - AluJb SINE Alu -11 301 4 504 318 117 47 chr4 142028850 142028933 -42259729 + L2 LINE L2 3204 3280 -33 337 348 57 9 chr4 142029158 142029368 -42259294 + L1M4 LINE L1 4085 4304 -1842 2474 135 33 23 chr4 142029372 142029802 -42258860 + Tigger2a DNA MER2_type 1 434 0 2402 69 3 0 chr4 142029885 142030191 -42258471 + AluY SINE Alu 1 307 -4 1671 153 3 14 chr4 142030345 142030627 -42258035 + AluJb SINE Alu 1 279 -33 829 73 8 8 chr4 142030630 142030753 -42257909 + (GAAA)n Simple_repeat Simple_repeat 2 124 0 198 0 0 0 chr4 142031990 142032012 -42256650 + (CA)n Simple_repeat Simple_repeat 2 23 0 22 56 0 0 chr4 142032637 142032673 -42255989 + AT_rich Low_complexity Low_complexity 1 36 0 235 103 0 0 chr4 142033113 142033152 -42255510 - L1MA3 LINE L1 0 6305 6267 2274 110 0 0 chr4 142033774 142034073 -42254589 + AluSx SINE Alu 1 299 -13 490 133 9 38 chr4 142034078 142034183 -42254479 + L1MB3 LINE L1 6081 6182 -1 21 36 0 0 chr4 142035568 142035596 -42253066 + AT_rich Low_complexity Low_complexity 1 28 0 275 274 57 28 chr4 142035686 142035792 -42252870 + L2 LINE L2 3162 3270 -2 3922 187 65 21 chr4 142038514 142039369 -42249293 + L1MC3 LINE L1 6889 7781 -4 294 180 0 0 chr4 142040529 142040590 -42248072 + (CATATA)n Simple_repeat Simple_repeat 5 65 0 446 91 146 64 chr4 142040788 142040898 -42247764 + MLT1C LTR MaLR 1 119 -348 180 0 0 0 chr4 142042328 142042348 -42246314 + (TG)n Simple_repeat Simple_repeat 2 21 0 569 309 96 33 chr4 142042561 142042927 -42245735 + L2 LINE L2 2923 3311 -2 192 77 0 0 chr4 142043660 142043686 -42244976 + (CA)n Simple_repeat Simple_repeat 2 27 0 474 224 122 13 chr4 142043810 142043966 -42244696 + LTR16A1 LTR ERVL 285 457 0 2703 117 28 35 chr4 142044041 142044476 -42244186 + MSTB1 LTR MaLR 1 432 0 218 281 16 0 chr4 142045572 142045636 -42243026 + MIR SINE MIR 119 183 -79 770 322 126 0 chr4 142045813 142046068 -42242594 + L3 LINE CR1 1274 1560 -17 399 218 82 27 chr4 142046103 142046213 -42242449 - MIR SINE MIR -24 238 123 2130 147 6 18 chr4 142046239 142046580 -42242082 + MER1B DNA MER1_type 1 337 0 1092 275 39 31 chr4 142046716 142047102 -42241560 - MLT1I LTR MaLR 0 409 21 22 35 0 0 chr4 142047279 142047308 -42241354 + AT_rich Low_complexity Low_complexity 1 29 0 3022 156 14 8 chr4 142047696 142048155 -42240507 + MLT2B2 LTR ERVL 1 465 -50 383 92 15 0 chr4 142048155 142048220 -42240442 + (TCTA)n Simple_repeat Simple_repeat 2 67 0 3022 156 14 8 chr4 142048220 142048268 -42240394 + MLT2B2 LTR ERVL 465 511 -4 247 371 68 86 chr4 142049331 142049358 -42239304 - L2 LINE L2 -36 3236 3210 252 0 0 0 chr4 142049358 142049386 -42239276 + (CATAT)n Simple_repeat Simple_repeat 3 30 0 247 371 68 86 chr4 142049386 142049752 -42238910 - L2 LINE L2 -62 3210 2850 223 342 13 0 chr4 142049781 142049857 -42238805 - MIR3 SINE MIR -7 201 125 198 0 0 0 chr4 142050383 142050405 -42238257 + (CA)n Simple_repeat Simple_repeat 1 22 0 31 0 0 0 chr4 142050449 142050480 -42238182 + AT_rich Low_complexity Low_complexity 1 31 0 400 359 0 0 chr4 142051671 142051788 -42236874 - L2 LINE L2 -2 3270 3154 346 340 119 57 chr4 142052000 142052385 -42236277 + L1MEc LINE L1 104 512 -5607 368 329 51 10 chr4 142052423 142052718 -42235944 + L1MEc LINE L1 592 898 -5221 461 268 62 39 chr4 142052754 142052933 -42235729 + LTR33 LTR ERVL 1 183 -338 576 315 72 22 chr4 142053074 142053395 -42235267 + LTR33 LTR ERVL 1 337 -184 414 290 84 4 chr4 142053451 142053698 -42234964 + L1MEc LINE L1 1419 1626 -893 * 441 311 87 21 chr4 142053693 142054027 -42234635 + L1M4 LINE L1 4222 4577 -1569 214 195 0 0 chr4 142054032 142054073 -42234589 + (TA)n Simple_repeat Simple_repeat 2 42 0 25 31 0 0 chr4 142054080 142054112 -42234550 + AT_rich Low_complexity Low_complexity 1 32 0 671 333 121 22 chr4 142054112 142054620 -42234042 - L2 LINE L2 -1274 2040 1465 1739 166 0 33 chr4 142054620 142054927 -42233735 + AluJo SINE Alu 5 301 -11 671 333 121 22 chr4 142054927 142055006 -42233656 - L2 LINE L2 -1849 1465 1395 25 31 0 0 chr4 142057383 142057415 -42231247 + AT_rich Low_complexity Low_complexity 1 32 0 589 131 0 0 chr4 142057519 142057603 -42231059 - FLAM_A SINE Alu -15 127 44 309 320 41 0 chr4 142059979 142060126 -42228536 + L1ME4a LINE L1 4506 4658 -1488 192 125 0 0 chr4 142060296 142060328 -42228334 + (TG)n Simple_repeat Simple_repeat 2 33 0 243 0 0 0 chr4 142060606 142060633 -42228029 + (CA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr4 142060683 142060704 -42227958 + AT_rich Low_complexity Low_complexity 1 21 0 517 263 83 61 chr4 142060736 142060770 -42227892 + L1ME4a LINE L1 5265 5297 -824 1931 116 36 0 chr4 142060770 142061046 -42227616 + AluSq SINE Alu 1 286 -27 723 122 87 0 chr4 142060931 142061046 -42227616 + AluSp/q SINE Alu 162 315 0 262 0 0 0 chr4 142061046 142061075 -42227587 + (TAA)n Simple_repeat Simple_repeat 2 180 0 517 263 83 61 chr4 142061075 142061201 -42227461 + L1ME4a LINE L1 5297 5419 -702 345 111 0 0 chr4 142061201 142061255 -42227407 - L1PB4 LINE L1 0 6156 6103 556 304 32 12 chr4 142061255 142061508 -42227154 + MIR SINE MIR 5 262 0 517 263 83 61 chr4 142061508 142061917 -42226745 + L1ME4a LINE L1 5418 5857 -264 241 252 9 99 chr4 142061904 142062015 -42226647 + L2 LINE L2 3205 3305 -8 * 1860 118 86 4 chr4 142063061 142063340 -42225322 + AluSx SINE Alu 1 302 -10 562 253 35 6 chr4 142063530 142063704 -42224958 + L1MC5 LINE L1 7747 7925 -36 23 97 0 0 chr4 142065579 142065651 -42223011 + AT_rich Low_complexity Low_complexity 1 72 0 386 63 0 32 chr4 142065839 142065902 -42222760 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 208 79 114 9 chr4 142066402 142066516 -42222146 + (TA)n Simple_repeat Simple_repeat 1 126 0 277 83 94 10 chr4 142066523 142066619 -42222043 + (TATAA)n Simple_repeat Simple_repeat 3 106 0 304 232 80 51 chr4 142066619 142066757 -42221905 + L1MCa LINE L1 1950 2091 -4335 299 101 50 20 chr4 142066757 142066856 -42221806 + (TA)n Simple_repeat Simple_repeat 1 102 0 22 0 0 0 chr4 142066915 142066937 -42221725 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr4 142067133 142067169 -42221493 + AT_rich Low_complexity Low_complexity 1 36 0 258 32 0 0 chr4 142069615 142069646 -42219016 + (CGG)n Simple_repeat Simple_repeat 1 31 0 288 0 0 0 chr4 142071694 142071726 -42216936 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 235 354 24 0 chr4 142071753 142071835 -42216827 + L2 LINE L2 3184 3267 -5 252 59 0 0 chr4 142072243 142072277 -42216385 + (TG)n Simple_repeat Simple_repeat 2 35 0 205 291 10 19 chr4 142073332 142073435 -42215227 + CT-rich Low_complexity Low_complexity 2 103 0 1925 150 22 50 chr4 142074541 142074942 -42213720 - MLT1B LTR MaLR 0 390 1 2393 90 0 7 chr4 142075909 142076219 -42212443 - AluY SINE Alu 0 311 4 437 217 50 25 chr4 142076987 142077107 -42211555 + MIR SINE MIR 50 172 -90 340 277 8 42 chr4 142077473 142077592 -42211070 - L2 LINE L2 -4 3268 3154 1057 160 5 30 chr4 142077710 142077910 -42210752 - MLT1B LTR MaLR -195 195 1 1935 153 15 25 chr4 142077950 142078355 -42210307 + MER65A LTR ERV1 45 445 0 210 326 97 82 chr4 142078625 142078821 -42209841 + L2 LINE L2 2988 3186 -86 1192 204 44 47 chr4 142080574 142080917 -42207745 - MLT1A1 LTR MaLR -11 354 13 2171 108 17 0 chr4 142081854 142082149 -42206513 + AluSq SINE Alu 1 300 -13 1705 288 96 66 chr4 142083221 142083395 -42205267 - ERVL LTR ERVL -2879 2885 2718 1004 216 44 0 chr4 142083395 142083599 -42205063 + MER58C DNA MER1_type 2 214 -1 1705 288 96 66 chr4 142083599 142084644 -42204018 - ERVL LTR ERVL -3046 2718 1629 276 288 34 20 chr4 142085135 142085281 -42203381 - ERVL LTR ERVL -4468 1017 870 683 78 0 0 chr4 142085524 142085633 -42203029 - L1P LINE L1 -2202 3944 3836 6952 64 1 0 chr4 142085633 142086870 -42201792 + L1PA5 LINE L1 4918 6154 0 4039 170 20 11 chr4 142087829 142088636 -42200026 - L1MB3 LINE L1 -85 6098 5285 2358 56 0 10 chr4 142089535 142089837 -42198825 + AluY SINE Alu 1 299 -12 11729 123 12 16 chr4 142091311 142093949 -42194713 + L1PA7 LINE L1 8 2639 -3822 378 0 0 0 chr4 142093949 142093991 -42194671 + (CAAAA)n Simple_repeat Simple_repeat 1 42 0 11729 123 12 16 chr4 142093991 142094131 -42194531 + L1PA7 LINE L1 2639 2778 -3683 10422 93 5 2 chr4 142094132 142096422 -42192240 + L1PA7 LINE L1 4184 6466 -3 24 32 0 0 chr4 142097046 142097077 -42191585 + AT_rich Low_complexity Low_complexity 1 31 0 873 262 45 20 chr4 142097481 142097725 -42190937 + MIR SINE MIR 13 262 0 736 243 40 17 chr4 142097967 142098268 -42190394 + L1MB8 LINE L1 4408 4715 -1431 * 6992 213 80 44 chr4 142098263 142101229 -42187433 + L1P3 LINE L1 5 3233 -3228 537 135 0 11 chr4 142101233 142101322 -42187340 + L1PA8 LINE L1 6074 6161 -11 1252 200 27 50 chr4 142101390 142101442 -42187220 + AluJb SINE Alu 1 53 -259 2242 106 50 31 chr4 142101442 142101799 -42186863 + THE1B LTR MaLR 1 364 0 1252 200 27 50 chr4 142101799 142102046 -42186616 + AluJb SINE Alu 53 293 -19 247 214 0 0 chr4 142102047 142102103 -42186559 + L1MB8 LINE L1 4741 4796 -1350 2183 232 45 25 chr4 142102136 142103043 -42185619 + L1MB8 LINE L1 4900 5822 -344 829 284 3 25 chr4 142103173 142103490 -42185172 + L1MB8 LINE L1 5862 6171 -7 1436 213 31 3 chr4 142103493 142103817 -42184845 + L1MCa LINE L1 14 346 -6080 1180 206 95 16 chr4 142103830 142104145 -42184517 + L1MCa LINE L1 571 910 -5516 301 234 106 21 chr4 142104146 142104240 -42184422 - L1M4 LINE L1 -1396 4750 4649 515 270 40 46 chr4 142106137 142106311 -42182351 - MER5A DNA MER1_type 0 189 17 316 360 53 0 chr4 142106547 142106661 -42182001 - L2 LINE L2 0 3272 3153 393 268 130 14 chr4 142106817 142106955 -42181707 - MIR SINE MIR -14 248 95 357 244 0 22 chr4 142107129 142107219 -42181443 + MLT1I LTR MaLR 118 205 -204 209 304 110 68 chr4 142108110 142108373 -42180289 + L2 LINE L2 3019 3292 -21 236 313 76 38 chr4 142108475 142108606 -42180056 - L2 LINE L2 -2 3311 3176 3052 245 112 2 chr4 142108636 142109485 -42179177 + L2 LINE L2 1876 2817 -497 26 0 0 0 chr4 142111185 142111211 -42177451 + AT_rich Low_complexity Low_complexity 1 26 0 310 251 191 8 chr4 142111268 142111503 -42177159 + HAL1b LINE L1 357 634 -714 204 302 105 12 chr4 142111840 142111926 -42176736 - MER5A DNA MER1_type -87 102 9 2161 178 24 66 chr4 142112218 142112476 -42176186 - L1MB7 LINE L1 -5 6179 5912 1900 174 58 0 chr4 142112476 142112821 -42175841 + MLT1A1 LTR MaLR 1 365 0 2161 178 24 66 chr4 142112821 142113025 -42175637 - L1MB7 LINE L1 -272 5912 5741 1652 203 0 20 chr4 142113025 142113326 -42175336 - AluJo SINE Alu -17 295 1 2161 178 24 66 chr4 142113326 142113408 -42175254 - L1MB7 LINE L1 -443 5741 5657 229 95 0 0 chr4 142113411 142113453 -42175209 + LTR66 LTR ERVL 398 439 -171 345 221 58 12 chr4 142113465 142113551 -42175111 - L1MC4 LINE L1 -1339 6703 6614 253 74 0 37 chr4 142113553 142113634 -42175028 + (TA)n Simple_repeat Simple_repeat 1 78 0 923 185 44 29 chr4 142113638 142113700 -42174962 - L1MB7 LINE L1 -537 5647 5587 1935 201 51 5 chr4 142113700 142114109 -42174553 - MSTC LTR MaLR 0 428 1 923 185 44 29 chr4 142114109 142114251 -42174411 - L1MB7 LINE L1 -597 5587 5440 444 313 66 54 chr4 142114257 142114865 -42173797 - L1MB7 LINE L1 -860 5286 4672 1284 98 0 0 chr4 142114933 142115097 -42173565 + AluY SINE Alu 133 296 -15 5926 142 5 15 chr4 142115098 142116216 -42172446 - L1PA15 LINE L1 -17 6799 5700 2250 127 122 10 chr4 142116216 142116601 -42172061 + MSTA LTR MaLR 1 428 0 8003 171 82 9 chr4 142116603 142118073 -42170589 + MSTA-int LTR MaLR 3 1580 0 2117 132 137 11 chr4 142118073 142118453 -42170209 + MSTA LTR MaLR 1 428 0 11896 214 19 7 chr4 142118453 142121211 -42167451 - L1PA15 LINE L1 -1093 5704 2915 4307 121 177 99 chr4 142121211 142122634 -42166028 + pTR5 LTR ERV1 743 2438 0 10763 221 28 22 chr4 142122649 142125420 -42163242 - L1PA15 LINE L1 -3891 2906 102 339 285 60 89 chr4 142125425 142125669 -42162993 - L1MB7 LINE L1 -1481 4665 4416 1718 203 3 3 chr4 142125669 142125975 -42162687 - AluJb SINE Alu -6 306 1 339 285 60 89 chr4 142125975 142126396 -42162266 - L1MB7 LINE L1 -1730 4416 4019 840 327 36 14 chr4 142126553 142127054 -42161608 - L1MB7 LINE L1 -2190 3956 3445 755 298 76 0 chr4 142127396 142127634 -42161028 + MLT1J LTR MaLR 20 275 -236 2146 147 61 48 chr4 142127634 142127678 -42160984 - L1MA4 LINE L1 -11 6289 6247 500 0 17 0 chr4 142127678 142127738 -42160924 + (TTTA)n Simple_repeat Simple_repeat 4 64 0 2024 130 0 7 chr4 142127741 142128026 -42160636 - AluSq SINE Alu -30 283 1 2146 147 61 48 chr4 142128026 142128419 -42160243 - L1MA4 LINE L1 -54 6246 5842 1172 145 22 57 chr4 142128426 142128653 -42160009 - THE1B LTR MaLR -142 222 4 9592 214 25 50 chr4 142128660 142132728 -42155934 - L1 LINE L1 -1629 5936 2097 420 380 36 28 chr4 142133164 142133556 -42155106 - L1 LINE L1 -5886 1610 1216 337 328 69 0 chr4 142135813 142135929 -42152733 + L2 LINE L2 3189 3312 -1 1715 165 45 28 chr4 142136660 142137018 -42151644 - THE1B LTR MaLR 0 364 1 1904 164 16 26 chr4 142137422 142137799 -42150863 - THE1C LTR MaLR -2 373 1 352 140 0 0 chr4 142138197 142138254 -42150408 - MLT2B1 LTR ERVL 0 520 464 216 97 0 0 chr4 142138265 142138296 -42150366 + (CA)n Simple_repeat Simple_repeat 2 32 0 232 48 48 0 chr4 142138472 142138514 -42150148 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 3942 24 0 0 chr4 142138525 142138984 -42149678 - L1PA2 LINE L1 0 6155 5697 8104 23 0 0 chr4 142138984 142140257 -42148405 + L1PA2 LINE L1 4423 5695 -460 27 62 0 0 chr4 142141025 142141073 -42147589 + AT_rich Low_complexity Low_complexity 1 48 0 189 0 0 0 chr4 142141436 142141457 -42147205 + (A)n Simple_repeat Simple_repeat 1 21 0 22 56 0 0 chr4 142142416 142142452 -42146210 + AT_rich Low_complexity Low_complexity 1 36 0 264 303 45 77 chr4 142142832 142142987 -42145675 + MIR SINE MIR 8 157 -105 2018 150 129 5 chr4 142143665 142144046 -42144616 - MSTA LTR MaLR 0 428 1 495 265 103 35 chr4 142144319 142144619 -42144043 + MLT1J LTR MaLR 1 282 -164 546 264 120 0 chr4 142144792 142144959 -42143703 + MER5A DNA MER1_type 1 187 -2 200 182 0 18 chr4 142145318 142145373 -42143289 + GA-rich Low_complexity Low_complexity 2 55 0 2447 68 3 0 chr4 142145456 142145752 -42142910 - AluY SINE Alu -14 297 1 1885 113 53 7 chr4 142146210 142146493 -42142169 + AluSx SINE Alu 1 296 -16 241 366 54 13 chr4 142147272 142147496 -42141166 - L2 LINE L2 -209 3063 2831 312 252 82 82 chr4 142148353 142148500 -42140162 + L1M3 LINE L1 5412 5558 -2250 282 261 54 0 chr4 142148557 142148649 -42140013 + L1M3 LINE L1 5667 5763 -417 1414 229 101 20 chr4 142149165 142150271 -42138391 + L1MC4 LINE L1 6678 7918 -124 195 42 0 0 chr4 142150310 142150334 -42138328 + (GA)n Simple_repeat Simple_repeat 1 24 0 993 274 0 0 chr4 142150778 142151001 -42137661 + MER58A DNA MER1_type 2 224 0 477 280 91 16 chr4 142151542 142151752 -42136910 + HERV16 LTR ERVL 1762 1956 -3040 600 244 182 27 chr4 142151834 142152092 -42136570 + LTR33 LTR ERVL 167 464 -57 423 256 93 74 chr4 142152227 142152551 -42136111 - MLT1H LTR MaLR -206 343 14 262 151 19 19 chr4 142152561 142152614 -42136048 + LTR33 LTR ERVL 463 515 -6 3799 25 0 0 chr4 142154234 142154676 -42133986 - L1PA3 LINE L1 -1829 4317 3876 8926 29 0 0 chr4 142154676 142156514 -42132148 + L1PA3 LINE L1 4314 6152 -3 22 35 0 0 chr4 142157401 142157430 -42131232 + AT_rich Low_complexity Low_complexity 1 29 0 244 296 29 89 chr4 142158207 142158487 -42130175 - L2 LINE L2 -1047 2267 2005 617 290 152 0 chr4 142158795 142159019 -42129643 + MIR SINE MIR 5 262 0 246 258 15 15 chr4 142160685 142160751 -42127911 - L2 LINE L2 -1 3271 3206 261 349 12 59 chr4 142161322 142161491 -42127171 + MIR3 SINE MIR 47 207 -1 181 227 23 0 chr4 142162421 142162465 -42126197 - MIR3 SINE MIR -9 199 155 208 201 38 113 chr4 142162691 142162804 -42125858 + MER5A DNA MER1_type 3 118 -71 2906 165 28 8 chr4 142162804 142163314 -42125348 + MLT2B1 LTR ERVL 1 520 0 208 201 38 113 chr4 142163314 142163334 -42125328 + MER5A DNA MER1_type 118 138 -51 473 239 39 70 chr4 142164001 142164231 -42124431 - L2 LINE L2 -9 3304 3082 30 27 0 0 chr4 142165181 142165218 -42123444 + AT_rich Low_complexity Low_complexity 1 37 0 2215 103 0 10 chr4 142166740 142167064 -42121598 + AluSx SINE Alu 1 312 0 298 273 41 25 chr4 142167155 142167276 -42121386 + MER103 DNA DNA 4 126 -40 2205 117 0 0 chr4 142167689 142167979 -42120683 - AluSx SINE Alu -18 294 5 914 93 12 31 chr4 142168387 142168548 -42120114 + L1MA4 LINE L1 6143 6300 0 804 249 58 19 chr4 142168788 142168993 -42119669 + MER58A DNA MER1_type 2 214 -10 1349 327 36 28 chr4 142169003 142169584 -42119078 + L1PA13 LINE L1 789 1374 -6200 419 296 14 14 chr4 142169620 142169762 -42118900 + L1PA13 LINE L1 2157 2298 -5276 7242 236 39 23 chr4 142170426 142171233 -42117429 + L1PA13 LINE L1 2185 2978 -4606 186 43 0 0 chr4 142171233 142171256 -42117406 + (GA)n Simple_repeat Simple_repeat 1 23 0 7242 236 39 23 chr4 142171256 142171786 -42116876 + L1PA13 LINE L1 2978 3498 -4086 2138 129 0 3 chr4 142171786 142172089 -42116573 + AluSx SINE Alu 3 304 -8 7242 236 39 23 chr4 142172089 142173692 -42114970 + L1PA13 LINE L1 3498 5135 -2449 351 0 0 0 chr4 142173692 142173731 -42114931 + (CA)n Simple_repeat Simple_repeat 2 40 0 7242 236 39 23 chr4 142173731 142173925 -42114737 + L1PA13 LINE L1 5135 5324 -2260 755 286 112 28 chr4 142174187 142174796 -42113866 + L1ME3A LINE L1 4416 5075 -1071 1165 219 143 96 chr4 142174811 142175414 -42113248 + MLT1E1 LTR MaLR 24 654 0 2272 276 33 18 chr4 142175415 142176501 -42112161 + L1ME3A LINE L1 5067 6162 -8 294 306 0 0 chr4 142176579 142176677 -42111985 + L1M4 LINE L1 4767 4864 -1282 1910 257 19 33 chr4 142177073 142177555 -42111107 - MLT1H1 LTR MaLR -15 540 66 248 105 0 0 chr4 142177886 142177924 -42110738 + L1ME3A LINE L1 6125 6162 -8 621 69 0 0 chr4 142178037 142178124 -42110538 + (TATATG)n Simple_repeat Simple_repeat 3 89 0 3032 103 114 160 chr4 142178367 142179368 -42109294 + LTR12 LTR ERV1 5 714 0 1533 231 33 33 chr4 142179466 142179920 -42108742 + L1ME2 LINE L1 5679 6132 -32 1619 203 0 17 chr4 142179946 142180247 -42108415 + AluJb SINE Alu 1 296 -16 235 266 25 0 chr4 142180297 142180376 -42108286 + L1MC4 LINE L1 7829 7909 -133 25 31 0 0 chr4 142180502 142180534 -42108128 + AT_rich Low_complexity Low_complexity 1 32 0 201 264 57 0 chr4 142181684 142181737 -42106925 + L3b LINE CR1 1281 1336 -247 255 343 96 0 chr4 142181774 142181920 -42106742 + L2 LINE L2 1922 2081 -1233 205 353 52 0 chr4 142182397 142182513 -42106149 + L2 LINE L2 3168 3289 -24 283 292 18 18 chr4 142182513 142182626 -42106036 + GA-rich Low_complexity Low_complexity 4 116 0 21 57 0 0 chr4 142183790 142183825 -42104837 + AT_rich Low_complexity Low_complexity 1 35 0 704 282 52 5 chr4 142184925 142185138 -42103524 + MIR SINE MIR 23 245 -17 616 293 43 73 chr4 142185698 142186121 -42102541 + MLT1J LTR MaLR 1 410 -101 205 301 43 11 chr4 142186714 142186807 -42101855 - MIR SINE MIR 0 262 167 30 27 0 0 chr4 142187363 142187400 -42101262 + AT_rich Low_complexity Low_complexity 1 37 0 2490 75 0 3 chr4 142187404 142187711 -42100951 + AluY SINE Alu 1 306 -5 238 359 53 20 chr4 142188118 142188363 -42100299 - L2 LINE L2 -1588 1726 1474 704 191 125 0 chr4 142188837 142189005 -42099657 + MLT1C LTR MaLR 6 194 -273 2542 82 38 0 chr4 142189082 142189424 -42099238 - THE1A LTR MaLR 0 355 1 11643 84 17 0 chr4 142189424 142190978 -42097684 - THE1A-int LTR MaLR 0 1580 1 896 109 44 0 chr4 142190978 142191115 -42097547 - THE1A LTR MaLR 0 355 213 810 218 6 6 chr4 142191085 142191250 -42097412 + MLT1C LTR MaLR 303 467 0 * 561 220 43 27 chr4 142192553 142192739 -42095923 - MER4A LTR ERV1 0 465 277 2109 99 11 60 chr4 142192751 142193222 -42095440 - MER4A LTR ERV1 -233 431 23 3048 264 198 52 chr4 142193222 142194268 -42094394 + L2 LINE L2 969 2313 -1001 2382 74 0 43 chr4 142194268 142194593 -42094069 + AluY SINE Alu 1 311 0 3048 264 198 52 chr4 142194593 142195078 -42093584 + L2 LINE L2 2313 2725 -589 1203 282 60 32 chr4 142195106 142195570 -42093092 - LTR40a LTR ERVL -42 477 1 814 312 65 16 chr4 142195571 142196034 -42092628 + L2 LINE L2 2722 3215 -98 188 242 0 0 chr4 142196027 142196060 -42092602 + MIR SINE MIR 203 235 -27 * 201 195 0 0 chr4 142196066 142196107 -42092555 + GA-rich Low_complexity Low_complexity 4 44 0 22 35 0 0 chr4 142196754 142196783 -42091879 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 142196940 142196968 -42091694 + AT_rich Low_complexity Low_complexity 1 28 0 2269 117 3 0 chr4 142198836 142199143 -42089519 - AluSp SINE Alu -5 308 1 4396 143 28 18 chr4 142199275 142200406 -42088256 + L1MA1 LINE L1 4814 5944 -358 206 261 239 0 chr4 142200705 142200793 -42087869 + L3 LINE CR1 1468 1576 -1 2012 232 44 4 chr4 142201197 142201701 -42086961 - L1M4 LINE L1 -5309 1233 710 3575 218 34 16 chr4 142201801 142202357 -42086305 - L1M4c LINE L1 -2875 3507 2922 2357 103 0 3 chr4 142202357 142202668 -42085994 + AluSx SINE Alu 1 310 -2 3575 218 34 16 chr4 142202668 142203127 -42085535 - L1M4c LINE L1 -3460 2922 2473 333 283 33 0 chr4 142203128 142203281 -42085381 - L1M4c LINE L1 -4759 1623 1434 1044 145 16 100 chr4 142203415 142203664 -42084998 + MST-int LTR MaLR 1 228 -1423 3224 247 40 47 chr4 142203666 142205301 -42083361 - L1MC/D LINE L1 -747 5399 3878 429 329 6 0 chr4 142205792 142205950 -42082712 + L1MEc LINE L1 46 204 -6192 509 361 70 58 chr4 142205997 142206654 -42082008 + L1MEc LINE L1 267 931 -5465 12285 33 0 2 chr4 142206861 142208760 -42079902 + L1P2 LINE L1 3915 5810 -345 9139 171 22 16 chr4 142209043 142210032 -42078630 + L1P5 LINE L1 3395 4377 -1779 189 0 0 0 chr4 142210032 142210053 -42078609 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 9139 171 22 16 chr4 142210053 142211349 -42077313 + L1P5 LINE L1 4377 5688 -468 1766 183 22 24 chr4 142211970 142212341 -42076321 - MLT1A2 LTR MaLR -4 370 1 498 316 0 7 chr4 142212388 142212527 -42076135 - L1PA13 LINE L1 -6563 224 87 300 200 0 0 chr4 142212527 142212577 -42076085 - LTR47B LTR ERVL -118 325 276 223 226 19 0 chr4 142212691 142212744 -42075918 + (TA)n Simple_repeat Simple_repeat 2 55 0 21 71 0 0 chr4 142214754 142214796 -42073866 + AT_rich Low_complexity Low_complexity 1 42 0 1316 111 6 0 chr4 142215212 142215392 -42073270 + AluSp SINE Alu 118 298 -15 2443 142 35 67 chr4 142215392 142215885 -42072777 + L1PB4 LINE L1 5675 6151 -5 2016 141 0 7 chr4 142216494 142216793 -42071869 - AluSx SINE Alu -15 297 1 378 43 0 0 chr4 142217409 142217456 -42071206 - MADE1 DNA Mariner -32 48 2 1692 103 0 0 chr4 142217808 142218032 -42070630 + AluSg/x SINE Alu 79 302 -8 186 43 0 0 chr4 142220627 142220650 -42068012 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 2402 75 0 0 chr4 142220658 142220953 -42067709 + AluY SINE Alu 1 295 -16 23 0 0 0 chr4 142221098 142221121 -42067541 + AT_rich Low_complexity Low_complexity 1 23 0 386 291 7 20 chr4 142221307 142221455 -42067207 + CT-rich Low_complexity Low_complexity 2 147 0 1676 192 10 0 chr4 142221492 142221800 -42066862 + AluJb SINE Alu 1 311 -1 300 356 17 6 chr4 142222544 142222718 -42065944 - L1MC4a LINE L1 -1891 5917 5742 452 279 108 20 chr4 142222871 142223075 -42065587 - MLT1J2 LTR MaLR -228 222 1 298 275 0 22 chr4 142223443 142223534 -42065128 + MIR SINE MIR 53 141 -121 689 139 0 9 chr4 142223579 142223694 -42064968 + AluSq SINE Alu 83 196 -117 195 42 0 0 chr4 142223908 142223932 -42064730 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1543 205 0 21 chr4 142223935 142224223 -42064439 - AluJo SINE Alu -30 282 1 231 287 23 0 chr4 142224619 142224706 -42063956 + HAL1 LINE L1 1482 1570 -937 603 274 97 101 chr4 142224708 142225482 -42063180 + HAL1 LINE L1 1650 2420 -87 207 0 0 0 chr4 142225593 142225616 -42063046 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2358 15 0 0 chr4 142225619 142225889 -42062773 - L1PA2 LINE L1 -11 6144 5875 802 233 0 0 chr4 142226234 142226380 -42062282 + FRAM SINE Alu 1 146 -30 3502 186 41 72 chr4 142226816 142226956 -42061706 + L1MC3 LINE L1 5951 6094 -1691 1962 123 58 0 chr4 142226956 142227248 -42061414 + AluSx SINE Alu 1 309 -3 261 0 0 0 chr4 142227248 142227277 -42061385 + (TA)n Simple_repeat Simple_repeat 2 30 0 3502 186 41 72 chr4 142227277 142228045 -42060617 + L1MC3 LINE L1 6092 6831 -954 22 70 0 0 chr4 142228071 142228114 -42060548 + AT_rich Low_complexity Low_complexity 1 43 0 949 316 68 19 chr4 142230845 142231269 -42057393 + L1M3c LINE L1 1356 1800 -5696 1326 299 29 73 chr4 142231915 142232474 -42056188 + L1M3c LINE L1 2314 2847 -4649 566 138 0 0 chr4 142232484 142232564 -42056098 + AluS SINE Alu 1 80 -232 1757 149 149 9 chr4 142232564 142232893 -42055769 + MSTA LTR MaLR 54 428 0 1265 299 50 17 chr4 142232893 142233495 -42055167 + L1M3c LINE L1 2716 3337 -4228 678 196 23 6 chr4 142233489 142233575 -42055087 + L1MD2 LINE L1 3601 3684 -2462 * 210 37 0 0 chr4 142233575 142233602 -42055060 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 678 196 23 6 chr4 142233602 142233688 -42054974 + L1MD2 LINE L1 3684 3776 -2370 1673 196 40 3 chr4 142233800 142234127 -42054535 - MSTB LTR MaLR -87 339 1 1794 222 37 16 chr4 142234128 142234560 -42054102 + L1MD2 LINE L1 5633 6073 -286 231 88 0 0 chr4 142234568 142234602 -42054060 + (TGG)n Simple_repeat Simple_repeat 2 35 0 435 203 11 0 chr4 142234602 142234699 -42053963 - L1MC/D LINE L1 -576 5783 5686 13704 200 27 20 chr4 142235156 142235981 -42052681 - L1MA5 LINE L1 -2 7319 6502 9021 111 10 2 chr4 142235981 142237254 -42051408 - HSMAR1 DNA Mariner 0 1287 4 13704 200 27 20 chr4 142237254 142239010 -42049652 - L1MA5 LINE L1 -819 6502 4760 180 0 0 0 chr4 142239010 142239030 -42049632 + (TTG)n Simple_repeat Simple_repeat 2 21 0 13704 200 27 20 chr4 142239030 142239341 -42049321 - L1MA5 LINE L1 -2561 4760 4453 2206 137 27 19 chr4 142239341 142239713 -42048949 - THE1C LTR MaLR 0 375 1 13704 200 27 20 chr4 142239713 142240403 -42048259 - L1MA5 LINE L1 -2868 4453 3770 1874 144 3 45 chr4 142240403 142240548 -42048114 + AluJo SINE Alu 1 128 -184 2195 115 0 0 chr4 142240548 142240844 -42047818 + AluSg1 SINE Alu 1 296 -13 1874 144 3 45 chr4 142240844 142241010 -42047652 + AluJo SINE Alu 128 299 -13 13704 200 27 20 chr4 142241010 142243238 -42045424 - L1MA5 LINE L1 -3551 3770 1454 450 232 35 154 chr4 142243430 142243801 -42044861 - L1MA5 LINE L1 -6254 914 588 1224 210 71 18 chr4 142244280 142244561 -42044101 + AluJo SINE Alu 1 296 -16 391 299 65 11 chr4 142245746 142245930 -42042732 + MER117 DNA MER1_type 1 194 -3 579 258 120 76 chr4 142246503 142246778 -42041884 + MLT1K LTR MaLR 88 374 -214 1204 143 31 5 chr4 142246778 142247001 -42041661 + L1MB4 LINE L1 5949 6177 -3 7106 192 42 19 chr4 142247028 142248455 -42040207 + L1 LINE L1 12 1828 -5737 440 122 54 0 chr4 142248455 142248529 -42040133 - MADE1 DNA Mariner -2 78 1 7106 192 42 19 chr4 142248529 142248806 -42039856 + L1 LINE L1 1828 2097 -5468 516 348 63 13 chr4 142248812 142249206 -42039456 + L1PA12 LINE L1 1 414 -7167 1951 250 32 26 chr4 142250151 142250774 -42037888 + L1PA12 LINE L1 2324 2950 -4631 1693 121 0 12 chr4 142250774 142251023 -42037639 - AluSc SINE Alu -4 305 60 1522 82 0 5 chr4 142251023 142251225 -42037437 + L1PB1 LINE L1 5785 5985 -166 1652 110 30 34 chr4 142251225 142251489 -42037173 + THE1B LTR MaLR 1 263 -101 3708 278 29 24 chr4 142251611 142253029 -42035633 + L1PA12 LINE L1 3432 4856 -2728 879 219 51 8 chr4 142253007 142253244 -42035418 + L1 LINE L1 5140 5386 -2198 * 1911 125 0 7 chr4 142253232 142253536 -42035126 - L1M1 LINE L1 -4650 2915 2614 480 145 0 0 chr4 142253534 142253610 -42035052 + L1PA12 LINE L1 5439 5514 -2070 * 10163 148 42 13 chr4 142253604 142256466 -42032196 + L1MA3 LINE L1 3374 6304 -1 375 249 180 2 chr4 142256489 142256617 -42032045 - MIR SINE MIR -59 203 55 22 70 0 0 chr4 142256679 142256722 -42031940 + AT_rich Low_complexity Low_complexity 1 43 0 332 319 12 12 chr4 142256829 142256992 -42031670 + MLT1K LTR MaLR 424 586 -2 2403 160 21 19 chr4 142257222 142257646 -42031016 - MSTB LTR MaLR -1 425 1 207 0 0 0 chr4 142258415 142258438 -42030224 + (CAA)n Simple_repeat Simple_repeat 2 24 0 242 317 67 42 chr4 142259200 142259320 -42029342 + MIR3 SINE MIR 71 193 -15 1512 205 17 0 chr4 142260014 142260311 -42028351 + AluSx SINE Alu 10 311 -1 21 0 0 0 chr4 142260332 142260353 -42028309 + AT_rich Low_complexity Low_complexity 1 21 0 898 276 62 49 chr4 142263853 142264321 -42024341 - MLT1J LTR MaLR 0 511 38 27 0 0 0 chr4 142264387 142264414 -42024248 + AT_rich Low_complexity Low_complexity 1 27 0 421 299 73 18 chr4 142264789 142265049 -42023613 + L1M4 LINE L1 2178 2447 -3699 336 310 69 46 chr4 142265191 142265452 -42023210 + L1M4 LINE L1 2675 2941 -3205 537 282 129 80 chr4 142265564 142265890 -42022772 - L2 LINE L2 -2 3311 2970 21 71 0 0 chr4 142266543 142266585 -42022077 + AT_rich Low_complexity Low_complexity 1 42 0 316 211 9 149 chr4 142267464 142267692 -42020970 + L1MC5 LINE L1 6851 7046 -915 26 0 0 0 chr4 142267781 142267807 -42020855 + AT_rich Low_complexity Low_complexity 1 26 0 756 293 66 75 chr4 142267816 142268388 -42020274 + L1M3d LINE L1 1 455 -5436 234 0 0 0 chr4 142268388 142268414 -42020248 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 756 293 66 75 chr4 142268414 142268474 -42020188 + L1M3d LINE L1 455 514 -5377 1848 239 4 11 chr4 142268639 142269091 -42019571 + L1M3d LINE L1 692 1140 -4751 451 95 0 0 chr4 142269095 142269158 -42019504 + L1 LINE L1 5195 5257 -889 4483 272 94 12 chr4 142269158 142270223 -42018439 - L1 LINE L1 -1904 4478 3502 4000 77 11 2 chr4 142270223 142270768 -42017894 - L1PA14 LINE L1 -2 6159 5610 4483 272 94 12 chr4 142270768 142273155 -42015507 - L1 LINE L1 -2880 3502 800 548 348 41 32 chr4 142273302 142273737 -42014925 - L1M3de LINE L1 -5214 677 201 1402 147 52 20 chr4 142273751 142274003 -42014659 - MSTA LTR MaLR 0 428 169 29227 48 0 5 chr4 142274003 142277631 -42011031 + L1P LINE L1 3 3612 -2534 273 214 160 8 chr4 142377639 142377770 -41910892 + L1ME3A LINE L1 4617 4767 -1379 1713 246 95 83 chr4 142377781 142377831 -41910831 + L1ME3A LINE L1 4823 4871 -1299 428 238 89 0 chr4 142377831 142377932 -41910730 + MER81 DNA DNA 5 114 0 1713 246 95 83 chr4 142377932 142378253 -41910409 + L1ME3A LINE L1 4871 5187 -983 888 135 0 16 chr4 142378253 142378379 -41910283 + FLAM_C SINE Alu 1 124 -9 1713 246 95 83 chr4 142378379 142379086 -41909576 + L1ME3A LINE L1 5187 5905 -265 2298 103 3 0 chr4 142379086 142379387 -41909275 + AluSg SINE Alu 1 302 -8 1713 246 95 83 chr4 142379387 142379656 -41909006 + L1ME3A LINE L1 5905 6169 -1 338 274 21 0 chr4 142379842 142379937 -41908725 - MER3 DNA MER1_type -71 138 42 2046 134 0 6 chr4 142380384 142380697 -41907965 - AluY SINE Alu 0 311 1 367 293 38 64 chr4 142382048 142382205 -41906457 - L2 LINE L2 -6 3266 3114 302 289 92 0 chr4 142383236 142383374 -41905288 - MIR SINE MIR -48 214 62 22 80 0 0 chr4 142384009 142384059 -41904603 + AT_rich Low_complexity Low_complexity 1 50 0 369 0 0 0 chr4 142384325 142384366 -41904296 + (TTA)n Simple_repeat Simple_repeat 2 42 0 723 209 0 0 chr4 142384374 142384489 -41904173 - AluJb SINE Alu -196 116 2 7039 182 41 48 chr4 142384788 142385527 -41903135 - LTR49-int LTR ERV1 -220 5699 4956 1642 167 17 14 chr4 142385527 142385821 -41902841 - AluJb SINE Alu -17 295 1 1852 169 3 10 chr4 142385821 142386123 -41902539 - AluJb SINE Alu -12 300 1 7039 182 41 48 chr4 142386123 142387588 -41901074 - LTR49-int LTR ERV1 -962 4957 2577 2435 96 0 0 chr4 142387588 142387901 -41900761 + AluSp SINE Alu 1 313 0 7039 182 41 48 chr4 142387901 142388112 -41900550 - LTR49-int LTR ERV1 -3342 2577 2366 1361 83 0 0 chr4 142388112 142388281 -41900381 + AluSg1 SINE Alu 1 169 -140 1458 147 24 44 chr4 142388281 142388574 -41900088 + LOR1-int LTR ERV1 1254 1540 -6580 979 191 9 35 chr4 142388713 142388943 -41899719 + AluJb SINE Alu 89 312 0 253 167 197 15 chr4 142388943 142389009 -41899653 + Tigger1 DNA MER2_type 2173 2250 -168 298 286 86 82 chr4 142389049 142389304 -41899358 - MLT1L LTR MaLR -159 456 201 2373 103 0 0 chr4 142389768 142390079 -41898583 + AluSq SINE Alu 1 311 -2 2194 135 0 0 chr4 142390089 142390393 -41898269 + AluSx SINE Alu 1 304 -8 1093 233 27 9 chr4 142390429 142390648 -41898014 + MER58A DNA MER1_type 1 223 -1 246 125 0 0 chr4 142390905 142390953 -41897709 + (TG)n Simple_repeat Simple_repeat 2 49 0 2173 118 3 0 chr4 142391380 142391676 -41896986 + AluSq SINE Alu 3 299 -14 1496 211 144 24 chr4 142392170 142392587 -41896075 + MLT1C LTR MaLR 1 467 0 5069 146 68 24 chr4 142393159 142393833 -41894829 - MER4D LTR ERV1 0 903 181 2068 115 10 3 chr4 142393833 142394137 -41894525 - AluSx SINE Alu -4 308 3 5069 146 68 24 chr4 142394137 142394327 -41894335 - MER4D LTR ERV1 -722 181 1 762 62 10 0 chr4 142394396 142394492 -41894170 + HY3 scRNA scRNA 3 99 -2 276 154 0 0 chr4 142394492 142394544 -41894118 + A-rich Low_complexity Low_complexity 1 52 0 525 268 70 61 chr4 142394688 142394901 -41893761 + MIR SINE MIR 11 225 -37 859 227 102 100 chr4 142394984 142395092 -41893570 - MLT1J LTR MaLR -1 510 404 555 250 80 0 chr4 142395092 142395204 -41893458 + FLAM_A SINE Alu 1 121 -12 859 227 102 100 chr4 142395204 142395505 -41893157 - MLT1J LTR MaLR -107 404 100 1761 156 0 36 chr4 142395518 142395826 -41892836 + AluJb SINE Alu 1 297 -15 560 244 73 12 chr4 142396347 142396511 -41892151 - MIR SINE MIR -54 208 35 228 275 14 0 chr4 142396816 142396885 -41891777 - MER103 DNA DNA -1 165 96 197 333 121 18 chr4 142397054 142397219 -41891443 + L2 LINE L2 2545 2726 -588 241 325 41 16 chr4 142397345 142397468 -41891194 + L2 LINE L2 2916 3041 -231 1930 124 64 0 chr4 142397567 142397850 -41890812 - AluSx SINE Alu -11 301 1 2108 110 0 0 chr4 142397862 142398144 -41890518 - AluSx SINE Alu -30 282 1 23 0 0 0 chr4 142398173 142398196 -41890466 + AT_rich Low_complexity Low_complexity 1 23 0 1070 156 11 16 chr4 142398357 142398543 -41890119 - AluJb SINE Alu -127 185 1 1105 158 0 24 chr4 142398571 142398736 -41889926 - FRAM SINE Alu -5 161 1 365 191 29 0 chr4 142398742 142398810 -41889852 + MER46C DNA MER2_type 269 338 0 261 83 0 0 chr4 142398961 142398997 -41889665 + (A)n Simple_repeat Simple_repeat 1 36 0 2395 100 0 3 chr4 142400030 142400339 -41888323 - AluSx SINE Alu -4 308 1 1613 170 3 42 chr4 142400715 142401026 -41887636 + AluJb SINE Alu 1 299 -13 204 222 22 0 chr4 142401189 142401234 -41887428 + MER91C DNA MER1_type 31 76 -64 314 346 103 17 chr4 142401261 142401495 -41887167 - MIR SINE MIR -2 260 7 5428 42 0 5 chr4 142401727 142402346 -41886316 - L1PA6 LINE L1 -3 6151 5536 1019 111 105 0 chr4 142403163 142403316 -41885346 - AluSg/x SINE Alu -14 298 130 2181 94 0 0 chr4 142403663 142403938 -41884724 + AluSx SINE Alu 1 275 -37 362 39 19 0 chr4 142403945 142403997 -41884665 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 295 323 38 142 chr4 142404526 142404969 -41883693 - L2 LINE L2 -5 3267 2871 1570 174 19 56 chr4 142405533 142405855 -41882807 - AluJo SINE Alu -2 310 1 2258 109 3 6 chr4 142406103 142406414 -41882248 - AluSx SINE Alu -2 310 1 739 168 109 0 chr4 142407496 142407615 -41881047 - FLAM_C SINE Alu 0 133 2 2119 113 31 0 chr4 142408209 142408501 -41880161 + AluSx SINE Alu 1 301 -11 787 232 12 18 chr4 142409122 142409290 -41879372 + MER5A DNA MER1_type 1 167 -22 313 299 114 1 chr4 142410069 142410176 -41878486 + MIR SINE MIR 38 153 -73 747 208 40 0 chr4 142410318 142410443 -41878219 - FLAM_A SINE Alu -3 130 1 354 250 77 0 chr4 142410788 142410892 -41877770 + MIR SINE MIR 71 182 -80 359 92 123 0 chr4 142411639 142411704 -41876958 - MADE1 DNA Mariner -7 73 1 340 222 175 38 chr4 142412262 142412420 -41876242 + MIR SINE MIR 50 218 -40 446 323 55 4 chr4 142412509 142412681 -41875981 - MIR SINE MIR -76 132 3 2058 126 14 0 chr4 142412881 142413175 -41875487 - AluSx SINE Alu -14 298 1 2425 97 3 0 chr4 142414162 142414473 -41874189 - AluSp SINE Alu -1 312 1 1435 112 9 69 chr4 142414521 142414753 -41873909 + MER20 DNA MER1_type 2 219 0 1319 78 6 0 chr4 142416675 142416842 -41871820 + L1PA5 LINE L1 5986 6153 -1 1698 201 56 0 chr4 142416990 142417313 -41871349 - MER58B DNA MER1_type 0 341 1 310 340 41 56 chr4 142417321 142417518 -41871144 + MIR SINE MIR 20 213 -49 22 35 0 0 chr4 142417548 142417577 -41871085 + AT_rich Low_complexity Low_complexity 1 29 0 990 112 0 8 chr4 142417636 142417770 -41870892 - FLAM_C SINE Alu 0 133 1 2470 76 0 0 chr4 142417986 142418290 -41870372 - AluSx SINE Alu -8 304 1 1291 120 52 17 chr4 142418663 142418896 -41869766 - MER96B DNA MER1_type? -2 415 175 2474 70 0 10 chr4 142419224 142419536 -41869126 - AluY SINE Alu -2 309 1 1971 131 14 0 chr4 142420621 142420904 -41867758 - AluSx SINE Alu -25 287 1 361 214 0 0 chr4 142420942 142421012 -41867650 - MER5A DNA MER1_type 0 189 120 352 306 83 13 chr4 142421220 142421377 -41867285 + MIR SINE MIR 28 195 -67 501 276 173 51 chr4 142421460 142421657 -41867005 - L1M4 LINE L1 -847 5299 5128 1805 166 0 66 chr4 142421657 142421989 -41866673 + AluJo SINE Alu 1 310 -2 501 276 173 51 chr4 142421989 142422323 -41866339 - L1M4 LINE L1 -1018 5128 4667 2294 92 3 10 chr4 142422323 142422629 -41866033 + AluSg1 SINE Alu 1 304 -5 501 276 173 51 chr4 142422629 142422765 -41865897 - L1M4 LINE L1 -1479 4667 4549 312 323 25 0 chr4 142422793 142422954 -41865708 - L1MCc LINE L1 -4928 2194 2030 2026 133 10 13 chr4 142423106 142423406 -41865256 - AluSx SINE Alu -13 299 1 758 155 12 62 chr4 142423418 142423579 -41865083 - L1MC1 LINE L1 0 6333 6181 1483 221 25 53 chr4 142423589 142423820 -41864842 - L1MCc LINE L1 -4889 1534 1419 2157 120 0 0 chr4 142423820 142424121 -41864541 - AluSx SINE Alu -11 301 1 1483 221 25 53 chr4 142424121 142424394 -41864268 - L1MCc LINE L1 -5004 1419 1140 246 318 91 18 chr4 142424416 142424526 -41864136 - L1MCc LINE L1 -5650 773 656 1786 299 25 21 chr4 142424540 142425111 -41863551 - L1MCc LINE L1 -5833 590 18 225 178 0 0 chr4 142425257 142425302 -41863360 + (CA)n Simple_repeat Simple_repeat 2 46 0 259 123 158 18 chr4 142425302 142425359 -41863303 - MLT2F LTR ERVL -58 605 541 709 258 99 11 chr4 142425376 142425697 -41862965 - MLT2F LTR ERVL -273 390 3 328 369 29 42 chr4 142425898 142426139 -41862523 - L1MEd LINE L1 -5547 572 335 23 0 0 0 chr4 142426410 142426433 -41862229 + AT_rich Low_complexity Low_complexity 1 23 0 2057 120 45 0 chr4 142426618 142426910 -41861752 + AluSg SINE Alu 6 310 0 21 0 0 0 chr4 142426959 142426980 -41861682 + AT_rich Low_complexity Low_complexity 1 21 0 637 275 87 57 chr4 142427102 142427331 -41861331 - MIR SINE MIR -2 260 25 949 98 0 0 chr4 142427345 142427467 -41861195 - AluSg SINE Alu -14 298 177 661 40 0 0 chr4 142427467 142427543 -41861119 - AluSg SINE Alu -234 77 2 1503 266 85 40 chr4 142427877 142428699 -41859963 - L1MC4 LINE L1 -315 7727 6869 626 305 196 6 chr4 142429156 142429734 -41858928 + L2 LINE L2 2616 3312 -1 2159 116 0 23 chr4 142430866 142431168 -41857494 - AluSx SINE Alu -8 304 10 830 158 7 36 chr4 142431233 142431372 -41857290 + AluJo SINE Alu 2 136 -176 190 211 42 14 chr4 142431443 142431585 -41857077 + (TA)n Simple_repeat Simple_repeat 2 147 0 2536 68 0 0 chr4 142432307 142432617 -41856045 + AluY SINE Alu 1 310 -1 26 0 0 0 chr4 142433019 142433045 -41855617 + AT_rich Low_complexity Low_complexity 1 26 0 766 142 0 0 chr4 142433055 142433161 -41855501 - FLAM_C SINE Alu -36 107 2 1971 151 57 83 chr4 142433440 142433812 -41854850 - THE1B LTR MaLR 0 364 3 12309 95 19 1 chr4 142433814 142435365 -41853297 - THE1B-int LTR MaLR 0 1580 1 2478 124 39 14 chr4 142435365 142435720 -41852942 - THE1B LTR MaLR 0 364 1 1507 181 20 24 chr4 142436345 142436767 -41851895 - L1MC/D LINE L1 -743 5663 5309 282 228 0 0 chr4 142436761 142436832 -41851830 - L1MEc LINE L1 -4913 1537 1435 * 887 137 0 0 chr4 142436890 142437014 -41851648 + FLAM_C SINE Alu 13 136 -7 4208 208 120 48 chr4 142437048 142438242 -41850420 - L1MEc LINE L1 -5128 1281 2 2074 133 14 0 chr4 142438367 142438660 -41850002 - AluSx SINE Alu -15 297 1 2260 113 0 0 chr4 142439720 142440029 -41848633 - AluY SINE Alu -2 309 1 2542 123 80 10 chr4 142441659 142442057 -41846605 - MSTA LTR MaLR 0 428 3 510 128 0 0 chr4 142442444 142442522 -41846140 - Alu SINE Alu -1 310 233 691 303 92 49 chr4 142442693 142443281 -41845381 + MLT1L LTR MaLR 1 613 -2 257 310 71 15 chr4 142443852 142444049 -41844613 + L1ME LINE L1 5616 5823 -298 1355 183 32 0 chr4 142444868 142445114 -41843548 + AluJo SINE Alu 1 254 -58 250 336 47 0 chr4 142445484 142445591 -41843071 + MER20 DNA MER1_type 87 198 -21 534 232 27 0 chr4 142445649 142445761 -41842901 + AluJb SINE Alu 118 232 -80 2100 126 10 13 chr4 142446689 142446999 -41841663 - AluSx SINE Alu -3 309 1 314 147 15 0 chr4 142447032 142447100 -41841562 + CT-rich Low_complexity Low_complexity 2 70 0 2346 95 0 0 chr4 142448316 142448612 -41840050 - AluSq SINE Alu -17 296 1 454 184 14 62 chr4 142449117 142449234 -41839428 + LTR33A LTR ERVL 437 523 0 499 218 10 10 chr4 142449691 142449792 -41838870 - L2 LINE L2 -3 3310 3210 4177 139 43 0 chr4 142452376 142453029 -41835633 + MER39 LTR ERV1 1 681 -26 1270 200 136 27 chr4 142453184 142453735 -41834927 + MER76 LTR ERV 1 687 -1 183 317 37 12 chr4 142453982 142454064 -41834598 + MIR3 SINE MIR 114 197 -11 1550 158 20 118 chr4 142454182 142454587 -41834075 + MLT1A1 LTR MaLR 1 365 0 3785 136 4 0 chr4 142454779 142455301 -41833361 - MER1A DNA MER1_type 0 527 4 1665 184 50 66 chr4 142455473 142455869 -41832793 + MLT1B LTR MaLR 1 390 0 22 35 0 0 chr4 142456097 142456126 -41832536 + AT_rich Low_complexity Low_complexity 1 29 0 3368 156 64 76 chr4 142456402 142457101 -41831561 - LTR8 LTR ERV1 0 691 1 273 204 43 43 chr4 142457161 142457254 -41831408 + HAL1 LINE L1 2245 2337 -170 473 178 0 76 chr4 142458445 142458563 -41830099 + L1ME3 LINE L1 6054 6162 0 1735 278 67 23 chr4 142458817 142459628 -41829034 + L1MC4a LINE L1 5120 5403 -743 671 89 99 10 chr4 142459639 142459740 -41828922 + MER85 DNA T2_type 1 110 -29 1645 136 51 0 chr4 142459840 142460076 -41828586 - LTR18A LTR ERVL -107 250 3 241 327 128 6 chr4 142460443 142460599 -41828063 + L2 LINE L2 3121 3295 -18 304 240 50 20 chr4 142461503 142461603 -41827059 + L1ME4a LINE L1 5732 5834 -1974 2554 169 28 12 chr4 142461609 142461749 -41826913 + MER6 DNA MER2_type 2 138 -727 4478 123 21 3 chr4 142461749 142462373 -41826289 - MER41B LTR ERV1 0 635 1 2554 169 28 12 chr4 142462373 142462657 -41826005 + MER6 DNA MER2_type 138 433 -432 2162 124 3 7 chr4 142462657 142462955 -41825707 + AluSx SINE Alu 1 297 -15 1289 210 23 10 chr4 142462957 142463295 -41825367 - LOR1-int LTR ERV1 -3684 4132 1720 914 193 0 0 chr4 142463393 142463543 -41825119 + AluSx SINE Alu 12 161 -151 1968 163 0 0 chr4 142463822 142464122 -41824540 - AluJb SINE Alu -10 302 3 22 0 0 0 chr4 142464246 142464268 -41824394 + AT_rich Low_complexity Low_complexity 1 22 0 2012 141 7 7 chr4 142464269 142464574 -41824088 - AluSq SINE Alu -8 305 1 226 297 0 16 chr4 142464870 142464934 -41823728 + L3 LINE CR1 617 679 -898 999 288 158 19 chr4 142465414 142465889 -41822773 + L3 LINE CR1 672 1212 -365 2248 111 0 3 chr4 142466556 142466863 -41821799 + AluSx SINE Alu 1 306 -6 2188 117 3 0 chr4 142466863 142467162 -41821500 + AluSg SINE Alu 1 300 -10 249 268 127 19 chr4 142467376 142467533 -41821129 + L1ME4a LINE L1 5944 6117 -4 718 267 91 9 chr4 142467658 142467879 -41820783 + L2 LINE L2 2638 2876 -438 585 244 81 78 chr4 142467896 142468204 -41820458 + L2 LINE L2 2996 3304 -9 242 342 0 0 chr4 142468285 142468364 -41820298 + L3 LINE CR1 1493 1571 -6 687 208 129 10 chr4 142469269 142469471 -41819191 - L1ME3A LINE L1 -5 6165 5940 617 171 21 21 chr4 142469529 142469669 -41818993 - L1MA10 LINE L1 -1 6333 6194 2796 188 48 51 chr4 142469670 142470068 -41818594 - L1ME1 LINE L1 -190 5976 5578 2351 97 3 0 chr4 142470068 142470366 -41818296 + AluSq SINE Alu 1 299 -14 2796 188 48 51 chr4 142470366 142470574 -41818088 - L1ME1 LINE L1 -588 5578 5371 1903 163 0 10 chr4 142470574 142470874 -41817788 - AluJo SINE Alu -15 297 1 2796 188 48 51 chr4 142470874 142470953 -41817709 - L1ME1 LINE L1 -795 5371 5293 2289 94 10 0 chr4 142470953 142471250 -41817412 - AluSp SINE Alu -13 300 1 2796 188 48 51 chr4 142471250 142471406 -41817256 - L1ME1 LINE L1 -873 5293 5133 1616 166 29 19 chr4 142471406 142471713 -41816949 - AluJo SINE Alu 0 312 3 1782 120 109 7 chr4 142471719 142471993 -41816669 - AluJo SINE Alu -9 303 2 183 80 0 0 chr4 142472005 142472030 -41816632 + (TTG)n Simple_repeat Simple_repeat 3 27 0 369 135 108 72 chr4 142472030 142472052 -41816610 - L1M4 LINE L1 -802 5344 5324 1965 138 14 7 chr4 142472052 142472348 -41816314 - AluJb SINE Alu -14 298 1 369 135 108 72 chr4 142472348 142472436 -41816226 - L1M4 LINE L1 -822 5324 5230 1441 230 2 32 chr4 142472450 142472511 -41816151 - L1M4 LINE L1 -1014 5132 5071 1648 203 96 8 chr4 142472511 142472875 -41815787 - MSTD LTR MaLR 0 396 1 1441 230 2 32 chr4 142472875 142473213 -41815449 - L1M4 LINE L1 -1075 5071 4745 2304 102 0 0 chr4 142473236 142473531 -41815131 - AluSq SINE Alu -18 295 1 1672 123 126 0 chr4 142473534 142473795 -41814867 - AluSq SINE Alu -10 303 10 851 198 30 56 chr4 142473795 142474027 -41814635 - L1M4 LINE L1 -1388 4758 4533 1537 204 25 7 chr4 142474029 142474313 -41814349 + AluJo SINE Alu 1 289 -23 195 42 0 0 chr4 142474334 142474358 -41814304 + (TTTTA)n Simple_repeat Simple_repeat 4 27 0 698 252 55 25 chr4 142474458 142474696 -41813966 + L1MEc LINE L1 780 1024 -5372 2187 134 0 3 chr4 142474700 142475006 -41813656 - AluSx SINE Alu -7 305 1 5443 64 24 41 chr4 142475348 142475779 -41812883 - MER4E LTR ERV1 0 766 352 2080 125 0 23 chr4 142475779 142476083 -41812579 - AluSg SINE Alu -13 297 1 5443 64 24 41 chr4 142476083 142476430 -41812232 - MER4E LTR ERV1 -414 352 1 1329 240 17 20 chr4 142476589 142476617 -41812045 + MLT1A1 LTR MaLR 75 102 -263 9124 107 12 6 chr4 142476617 142477894 -41810768 + HSMAR1 DNA Mariner 4 1287 0 1329 240 17 20 chr4 142477894 142478157 -41810505 + MLT1A1 LTR MaLR 102 365 0 313 135 39 0 chr4 142478174 142478226 -41810436 + MER69 DNA AcHobo 15 68 -109 582 191 73 7 chr4 142478369 142478505 -41810157 + MER69 DNA AcHobo 2382 2526 0 189 356 11 0 chr4 142478521 142478611 -41810051 - L2 LINE L2 -2070 1244 1154 1824 179 0 7 chr4 142478626 142478922 -41809740 + AluSx SINE Alu 1 294 -18 482 125 67 19 chr4 142479661 142479747 -41808915 + L1MB2 LINE L1 6061 6154 -17 203 0 37 0 chr4 142479747 142479774 -41808888 + (TTG)n Simple_repeat Simple_repeat 2 29 0 482 125 67 19 chr4 142479774 142479791 -41808871 + L1MB2 LINE L1 6154 6169 -2 188 233 107 87 chr4 142479925 142480028 -41808634 + MIR SINE MIR 22 126 -82 472 268 44 44 chr4 142482484 142482667 -41805995 + MER5A DNA MER1_type 7 189 0 752 159 172 0 chr4 142483337 142483488 -41805174 - MER20 DNA MER1_type -1 218 42 4240 130 61 19 chr4 142483531 142484284 -41804378 + LTR1 LTR ERV1 1 785 0 30 45 0 0 chr4 142484427 142484471 -41804191 + AT_rich Low_complexity Low_complexity 1 44 0 2351 92 3 0 chr4 142484500 142484805 -41803857 - AluSp SINE Alu -7 306 1 542 119 20 50 chr4 142484960 142485061 -41803601 - ORSL DNA AcHobo 0 275 178 25 51 0 0 chr4 142485960 142485999 -41802663 + AT_rich Low_complexity Low_complexity 1 39 0 350 240 0 27 chr4 142486013 142486088 -41802574 - ORSL DNA AcHobo -200 75 3 493 333 143 24 chr4 142486295 142486973 -41801689 - L2 LINE L2 -350 2964 2206 290 264 0 0 chr4 142487692 142487764 -41800898 + MIR3 SINE MIR 85 156 -52 394 147 44 0 chr4 142489218 142489286 -41799376 + FLAM SINE Alu 48 118 -15 289 236 9 75 chr4 142491696 142491802 -41796860 - L2 LINE L2 -2 3311 3213 334 272 132 0 chr4 142492039 142492153 -41796509 - MIR SINE MIR -59 149 21 2346 90 0 37 chr4 142492335 142492658 -41796004 + AluSq SINE Alu 1 311 -2 2182 145 0 0 chr4 142492668 142492978 -41795684 + AluSx SINE Alu 1 310 -2 1018 233 27 9 chr4 142493014 142493233 -41795429 + MER58A DNA MER1_type 1 223 -1 249 135 0 0 chr4 142493490 142493542 -41795120 + (TG)n Simple_repeat Simple_repeat 2 53 0 2189 118 3 0 chr4 142493969 142494265 -41794397 + AluSq SINE Alu 3 299 -14 1402 216 144 22 chr4 142494759 142495175 -41793487 + MLT1C LTR MaLR 1 467 0 1762 95 4 0 chr4 142495791 142496023 -41792639 - AluSp SINE Alu -80 233 1 473 313 101 52 chr4 142496107 142496329 -41792333 + L2 LINE L2 2804 3014 -299 2303 102 0 0 chr4 142496329 142496622 -41792040 + AluSx SINE Alu 4 296 -16 473 313 101 52 chr4 142496622 142496884 -41791778 + L2 LINE L2 3014 3312 -1 1858 165 0 3 chr4 142497563 142497866 -41790796 - AluSx SINE Alu -10 302 1 2200 119 7 0 chr4 142497877 142498187 -41790475 - AluSx SINE Alu 0 312 1 1988 98 22 4 chr4 142498205 142498545 -41790117 - AluSx SINE Alu 0 345 1 321 250 15 0 chr4 142498593 142498697 -41789965 - MIR SINE MIR -56 152 45 2577 46 7 0 chr4 142499227 142499529 -41789133 - AluSp SINE Alu -9 304 1 188 119 0 24 chr4 142500110 142500152 -41788510 + (TCCC)n Simple_repeat Simple_repeat 1 41 0 224 254 0 45 chr4 142500235 142500302 -41788360 + G-rich Low_complexity Low_complexity 4 67 0 288 0 0 0 chr4 142500732 142500764 -41787898 + (TG)n Simple_repeat Simple_repeat 1 32 0 24 0 0 0 chr4 142500939 142500963 -41787699 + GC_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4 142502302 142502324 -41786338 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr4 142502696 142502719 -41785943 + (TG)n Simple_repeat Simple_repeat 1 23 0 191 225 0 0 chr4 142503190 142503230 -41785432 + MIR3 SINE MIR 139 178 -30 2030 115 21 0 chr4 142503231 142503517 -41785145 + AluSx SINE Alu 14 305 -7 2070 111 30 14 chr4 142504489 142504786 -41783876 - AluSx SINE Alu -10 302 1 2352 79 9 38 chr4 142506529 142506847 -41781815 - AluSq SINE Alu -4 309 1 334 272 132 0 chr4 142507029 142507143 -41781519 + MIR SINE MIR 21 149 -59 289 236 9 75 chr4 142507380 142507486 -41781176 + L2 LINE L2 3213 3311 -2 394 147 44 0 chr4 142509896 142509964 -41778698 - FLAM SINE Alu -15 118 48 290 264 0 0 chr4 142511418 142511490 -41777172 - MIR3 SINE MIR -52 156 85 466 335 143 24 chr4 142512209 142512887 -41775775 + L2 LINE L2 2206 2964 -350 350 240 0 27 chr4 142513094 142513169 -41775493 + ORSL DNA AcHobo 3 75 -200 25 51 0 0 chr4 142513183 142513222 -41775440 + AT_rich Low_complexity Low_complexity 1 39 0 542 119 20 50 chr4 142514125 142514226 -41774436 + ORSL DNA AcHobo 178 275 0 2360 92 3 0 chr4 142514381 142514687 -41773975 + AluSp SINE Alu 1 307 -6 30 45 0 0 chr4 142514716 142514760 -41773902 + AT_rich Low_complexity Low_complexity 1 44 0 4240 130 61 19 chr4 142514903 142515656 -41773006 - LTR1 LTR ERV1 0 785 1 752 159 172 0 chr4 142515699 142515850 -41772812 + MER20 DNA MER1_type 42 218 -1 472 268 44 44 chr4 142516520 142516703 -41771959 - MER5A DNA MER1_type 0 189 7 196 223 107 87 chr4 142519158 142519261 -41769401 - MIR SINE MIR -82 126 22 498 112 34 22 chr4 142519433 142519522 -41769140 - L1MB2 LINE L1 -21 6150 6061 21 57 0 0 chr4 142522380 142522415 -41766247 + AT_rich Low_complexity Low_complexity 1 35 0 787 267 85 85 chr4 142525440 142525910 -41762752 - LTR67 LTR ERVL -1 556 84 905 143 0 0 chr4 142525910 142526043 -41762619 - FLAM_C SINE Alu 0 133 1 787 267 85 85 chr4 142526043 142526127 -41762535 - LTR67 LTR ERVL -472 85 2 4063 104 27 10 chr4 142526281 142526905 -41761757 - MER41B LTR ERV1 0 635 1 482 275 152 1 chr4 142526919 142527125 -41761537 - MIR SINE MIR -14 248 16 2070 113 38 0 chr4 142527901 142528193 -41760469 + AluSq SINE Alu 2 304 -9 2680 39 0 0 chr4 142528852 142529160 -41759502 - AluY SINE Alu -3 308 1 418 365 7 15 chr4 142529338 142529475 -41759187 + L2 LINE L2 3137 3272 0 203 248 47 124 chr4 142529970 142530099 -41758563 - L2 LINE L2 -1 3271 3153 245 224 0 0 chr4 142530128 142530177 -41758485 + MIR3 SINE MIR 159 207 -1 297 164 0 0 chr4 142530638 142530693 -41757969 - L1M4 LINE L1 -353 5825 5771 239 135 0 0 chr4 142530721 142530758 -41757904 - Alu SINE Alu -16 286 250 188 254 14 113 chr4 142531224 142531295 -41757367 + L2 LINE L2 3200 3263 -9 2048 137 3 7 chr4 142531703 142532009 -41756653 - AluSx SINE Alu -7 305 1 1927 124 67 14 chr4 142532790 142532935 -41755727 - AluSq SINE Alu -16 297 161 2078 128 0 3 chr4 142532935 142533224 -41755438 - AluSx SINE Alu -24 288 1 1927 124 67 14 chr4 142533224 142533360 -41755302 - AluSq SINE Alu -152 161 1 323 276 221 28 chr4 142533882 142534027 -41754635 + L3 LINE CR1 1307 1479 -98 227 299 0 13 chr4 142534038 142534115 -41754547 - LTR33 LTR ERVL 0 521 446 252 318 148 9 chr4 142534240 142534463 -41754199 - LTR33 LTR ERVL -242 279 26 7348 40 0 0 chr4 142534539 142535874 -41752788 - L1PA5 LINE L1 -3 6151 4813 819 129 0 0 chr4 142536026 142536142 -41752520 + AluSq/x SINE Alu 1 116 -196 201 284 168 0 chr4 142536160 142536255 -41752407 - L3 LINE CR1 -158 1419 1309 660 236 56 11 chr4 142536317 142536495 -41752167 - L2 LINE L2 0 3313 3128 285 338 126 30 chr4 142536499 142536730 -41751932 + L3 LINE CR1 883 1135 -442 957 321 194 15 chr4 142536733 142537028 -41751634 - L3 LINE CR1 -298 1279 1038 315 0 0 0 chr4 142537028 142537063 -41751599 + (CA)n Simple_repeat Simple_repeat 2 36 0 957 321 194 15 chr4 142537063 142537447 -41751215 - L3 LINE CR1 -539 1038 478 1670 178 0 4 chr4 142537530 142537806 -41750856 + AluJb SINE Alu 1 275 -37 306 0 0 0 chr4 142537806 142537840 -41750822 + (TC)n Simple_repeat Simple_repeat 2 35 0 34 0 0 0 chr4 142537841 142537875 -41750787 + AT_rich Low_complexity Low_complexity 1 34 0 1836 134 4 4 chr4 142538954 142539231 -41749431 - AluSx SINE Alu -35 277 1 1095 138 13 74 chr4 142539717 142539948 -41748714 - MER20 DNA MER1_type -2 217 1 184 240 100 0 chr4 142540015 142540065 -41748597 - L3 LINE CR1 -23 1554 1500 396 0 0 0 chr4 142542613 142542657 -41746005 + (TC)n Simple_repeat Simple_repeat 1 44 0 1730 152 29 4 chr4 142543591 142543868 -41744794 - AluJb SINE Alu -28 284 1 196 270 0 0 chr4 142543923 142543960 -41744702 - L2 LINE L2 -87 3185 3149 250 313 15 76 chr4 142543999 142544130 -41744532 + MIR SINE MIR 30 152 -56 198 296 155 0 chr4 142544133 142544204 -41744458 + MIR3 SINE MIR 115 196 -12 753 169 23 0 chr4 142544574 142544704 -41743958 - FLAM_C SINE Alu 0 133 1 298 307 93 27 chr4 142545082 142545232 -41743430 + MIR SINE MIR 12 171 -91 526 271 126 0 chr4 142545427 142545626 -41743036 + MIR SINE MIR 12 235 -27 522 250 68 38 chr4 142547448 142547740 -41740922 - L1ME4a LINE L1 -31 6090 5790 1809 168 10 3 chr4 142547781 142548073 -41740589 + AluJo SINE Alu 6 299 -13 23 0 0 0 chr4 142548262 142548285 -41740377 + AT_rich Low_complexity Low_complexity 1 23 0 299 267 133 0 chr4 142549050 142549165 -41739497 + MIR SINE MIR 33 160 -67 416 255 131 50 chr4 142549406 142549705 -41738957 - MLT1J LTR MaLR -41 470 109 1675 172 0 7 chr4 142549841 142550114 -41738548 + AluJb SINE Alu 1 271 -41 271 272 74 0 chr4 142550125 142550206 -41738456 + MER58B DNA MER1_type 174 260 -81 * 1513 151 46 63 chr4 142550204 142550376 -41738286 - MER46B DNA MER2_type -2511 220 181 1768 203 0 3 chr4 142550376 142550671 -41737991 - AluJo SINE Alu -18 294 1 1513 151 46 63 chr4 142550671 142550849 -41737813 - MER46B DNA MER2_type -2550 181 1 438 136 0 0 chr4 142550849 142550914 -41737748 + MER58B DNA MER1_type 259 323 -18 2260 122 3 0 chr4 142551102 142551413 -41737249 - AluSp SINE Alu 0 313 2 2201 108 0 0 chr4 142552401 142552698 -41735964 - AluSx SINE Alu -15 297 1 359 294 0 0 chr4 142553668 142553753 -41734909 + L2 LINE L2 3229 3313 0 421 250 107 50 chr4 142554504 142554629 -41734033 + MIR SINE MIR 103 238 -24 700 255 87 57 chr4 142554629 142555123 -41733539 - MLT1J LTR MaLR -2 509 1 421 250 107 50 chr4 142555123 142555137 -41733525 + MIR SINE MIR 238 250 -12 558 182 34 47 chr4 142557176 142557324 -41731338 + MER58C DNA MER1_type 70 215 0 973 198 63 28 chr4 142557334 142557587 -41731075 + MIR SINE MIR 1 262 0 2170 102 0 16 chr4 142557975 142558279 -41730383 + AluY SINE Alu 1 299 -12 445 229 71 36 chr4 142559193 142559333 -41729329 + L2 LINE L2 3169 3313 0 346 167 0 79 chr4 142560310 142560424 -41728238 + HAL1b LINE L1 751 855 -493 311 221 77 111 chr4 142561078 142561259 -41727403 - L2 LINE L2 -15 3298 3124 867 168 0 0 chr4 142562761 142562892 -41725770 + FLAM_C SINE Alu 1 131 -2 2036 133 3 13 chr4 142563924 142564226 -41724436 - AluSx SINE Alu -13 299 1 182 317 17 17 chr4 142564226 142564286 -41724376 - L2 LINE L2 -25 3288 3229 22 0 0 0 chr4 142564542 142564564 -41724098 + AT_rich Low_complexity Low_complexity 1 22 0 2268 117 0 3 chr4 142564669 142564968 -41723694 + AluSx SINE Alu 1 298 -14 23 54 0 0 chr4 142565026 142565063 -41723599 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr4 142565857 142565878 -41722784 + AT_rich Low_complexity Low_complexity 1 21 0 1076 182 5 19 chr4 142568535 142568749 -41719913 + AluJo SINE Alu 85 295 -17 827 168 135 5 chr4 142568752 142568937 -41719725 - MER3 DNA MER1_type 0 209 1 500 239 9 0 chr4 142570041 142570150 -41718512 + MER81 DNA DNA 5 114 0 404 276 6 35 chr4 142570150 142570320 -41718342 - L1ME LINE L1 -362 5759 5595 21 57 0 0 chr4 142572249 142572284 -41716378 + AT_rich Low_complexity Low_complexity 1 35 0 429 269 59 21 chr4 142572474 142572660 -41716002 - L1MC4a LINE L1 -1880 5928 5736 271 292 97 62 chr4 142573089 142573233 -41715429 - L2 LINE L2 -181 3091 2943 207 0 0 0 chr4 142573845 142573868 -41714794 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 399 267 11 61 chr4 142573914 142574094 -41714568 + MER5B DNA MER1_type 4 174 -4 195 250 0 0 chr4 142574817 142574861 -41713801 - L2 LINE L2 -8 3264 3221 389 362 77 61 chr4 142576454 142576780 -41711882 - L2 LINE L2 -33 3239 2909 2172 88 30 3 chr4 142577808 142578104 -41710558 - AluSx SINE Alu -6 306 3 1659 126 23 63 chr4 142578765 142579113 -41709549 - L1MB3 LINE L1 -1 6182 5849 259 159 0 0 chr4 142579113 142579157 -41709505 - L1MB3 LINE L1 -1201 4945 4902 2382 61 0 10 chr4 142580107 142580400 -41708262 + AluY SINE Alu 1 290 -21 23 33 0 0 chr4 142580436 142580466 -41708196 + AT_rich Low_complexity Low_complexity 1 30 0 2022 134 0 10 chr4 142580472 142580763 -41707899 + AluSx SINE Alu 1 288 -24 1038 31 78 0 chr4 142580778 142580907 -41707755 - MER85 DNA T2_type 0 139 1 2079 136 3 3 chr4 142581396 142581691 -41706971 - AluSx SINE Alu -17 295 1 184 197 15 15 chr4 142583161 142583227 -41705435 + (TA)n Simple_repeat Simple_repeat 1 66 0 203 289 0 77 chr4 142583254 142583306 -41705356 - L2 LINE L2 -88 3184 3137 2351 218 83 45 chr4 142584893 142585624 -41703038 - L1ME3 LINE L1 -1 6161 5403 351 113 0 0 chr4 142585644 142585697 -41702965 + (T)n Simple_repeat Simple_repeat 1 53 0 266 242 3 68 chr4 142585698 142585801 -41702861 - MER5B DNA MER1_type -56 133 29 1206 93 0 12 chr4 142587399 142587561 -41701101 + AluY SINE Alu 1 160 -151 1793 42 5 5 chr4 142587561 142587773 -41700889 + AluY SINE Alu 84 295 -16 405 0 0 0 chr4 142587776 142587821 -41700841 + (TA)n Simple_repeat Simple_repeat 1 45 0 21 0 0 0 chr4 142587843 142587864 -41700798 + AT_rich Low_complexity Low_complexity 1 21 0 2217 105 10 0 chr4 142588661 142588955 -41699707 + AluSc SINE Alu 1 297 -12 245 35 0 0 chr4 142589042 142589071 -41699591 - LTR6A LTR ERV1 -463 101 73 30 45 0 0 chr4 142589964 142590008 -41698654 + AT_rich Low_complexity Low_complexity 1 44 0 1731 145 32 3 chr4 142590271 142590553 -41698109 + AluJo SINE Alu 21 310 -2 180 265 0 20 chr4 142590590 142590639 -41698023 - L2 LINE L2 -15 3257 3210 1390 136 8 17 chr4 142590934 142591169 -41697493 - MER61C LTR ERV1 0 434 202 21017 103 33 16 chr4 142591181 142592756 -41695906 - MER61C-int LTR ERV1 -1 5216 3669 1866 59 4 0 chr4 142592756 142592993 -41695669 + L1PA5 LINE L1 5917 6154 0 21017 103 33 16 chr4 142592993 142593081 -41695581 - MER61C-int LTR ERV1 -1548 3669 3584 2154 134 0 3 chr4 142593081 142593387 -41695275 - AluSx SINE Alu -7 305 1 21017 103 33 16 chr4 142593387 142595557 -41693105 - MER61C-int LTR ERV1 -1633 3584 958 2512 122 23 28 chr4 142595557 142595993 -41692669 - MER61C-int LTR ERV1 -4377 840 407 390 81 244 23 chr4 142596004 142596090 -41692572 - MER61C-int LTR ERV1 -4763 454 350 924 171 75 45 chr4 142596140 142596339 -41692323 - MER61C-int LTR ERV1 -5012 205 1 1005 156 103 45 chr4 142596339 142596563 -41692099 - MER61C LTR ERV1 0 434 198 381 230 35 95 chr4 142597370 142597455 -41691207 + L1ME LINE L1 5482 5571 -550 2251 103 3 0 chr4 142597455 142597746 -41690916 - AluSq SINE Alu -21 292 1 381 230 35 95 chr4 142597746 142597860 -41690802 + L1ME LINE L1 5571 5669 -452 24 32 0 0 chr4 142597935 142597966 -41690696 + AT_rich Low_complexity Low_complexity 1 31 0 667 272 80 4 chr4 142598241 142598517 -41690145 + L1ME3A LINE L1 3274 3570 -2576 848 234 69 32 chr4 142598581 142598928 -41689734 + L1ME3A LINE L1 3864 4239 -1907 1347 265 136 32 chr4 142598930 142599885 -41688777 + L1ME3A LINE L1 4275 5328 -818 1867 229 52 103 chr4 142599894 142600688 -41687974 + L1ME3A LINE L1 5418 6170 0 228 210 0 16 chr4 142600724 142600786 -41687876 + L1MC5 LINE L1 7359 7419 -542 717 171 0 0 chr4 142601152 142601263 -41687399 + FLAM_A SINE Alu 12 122 -20 189 210 0 0 chr4 142601439 142601501 -41687161 + GA-rich Low_complexity Low_complexity 3 64 0 1524 169 60 27 chr4 142603468 142603769 -41684893 - AluJo SINE Alu -1 311 1 240 306 0 32 chr4 142604729 142604791 -41683871 - L2 LINE L2 -12 3301 3242 271 337 29 83 chr4 142604913 142605118 -41683544 + L2 LINE L2 2985 3178 -94 693 291 94 28 chr4 142609720 142610039 -41678623 - MER102b DNA MER1_type 0 341 2 214 260 0 39 chr4 142610773 142610850 -41677812 + T-rich Low_complexity Low_complexity 4 77 0 2578 59 0 0 chr4 142612122 142612429 -41676233 - AluY SINE Alu -4 307 1 5561 106 32 2 chr4 142613720 142614552 -41674110 - L1PA16 LINE L1 -2 6164 5308 2335 71 6 10 chr4 142614775 142615086 -41673576 - AluSq SINE Alu -3 310 1 22 35 0 0 chr4 142615086 142615115 -41673547 + AT_rich Low_complexity Low_complexity 1 29 0 444 331 63 34 chr4 142615174 142615349 -41673313 + MER91A DNA MER1_type 17 196 0 2349 112 0 3 chr4 142617034 142617347 -41671315 - AluSx SINE Alu 0 312 1 841 313 48 4 chr4 142617564 142618018 -41670644 - L1MEc LINE L1 -4641 1755 1282 475 262 133 14 chr4 142618084 142618294 -41670368 - L1MEc LINE L1 -5320 885 651 25 0 0 0 chr4 142622275 142622300 -41666362 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 142623776 142623798 -41664864 + AT_rich Low_complexity Low_complexity 1 22 0 2287 161 32 10 chr4 142623827 142624232 -41664430 + MLT2C2 LTR ERVL 1 414 -50 305 93 0 0 chr4 142624328 142624382 -41664280 + MLT2C1 LTR ERVL 356 395 -2 1761 233 121 6 chr4 142625250 142625736 -41662926 - MLT1F LTR MaLR 0 542 1 811 204 72 28 chr4 142625974 142626224 -41662438 - MLT1B LTR MaLR -69 321 61 649 106 88 0 chr4 142626269 142626382 -41662280 - LTR33 LTR ERVL -14 507 385 916 161 0 32 chr4 142626392 142626547 -41662115 + FRAM SINE Alu 8 157 -19 852 261 187 6 chr4 142626565 142626891 -41661771 - LTR33 LTR ERVL -136 385 1 290 224 15 15 chr4 142627068 142627135 -41661527 + MLT1J LTR MaLR 98 164 -347 1333 201 63 39 chr4 142627860 142628274 -41660388 + LTR37A LTR ERV1 3 426 0 2158 134 33 6 chr4 142628327 142628692 -41659970 - THE1C LTR MaLR 0 375 1 371 225 23 16 chr4 142629431 142629560 -41659102 + MER31-int LTR ERV1 1316 1445 -3491 5397 213 72 43 chr4 142629739 142631546 -41657116 - L1M4 LINE L1 -2018 4128 2269 471 283 53 73 chr4 142632522 142632769 -41655893 - MIR SINE MIR -7 255 14 21 36 0 0 chr4 142633339 142633367 -41655295 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 142633454 142633475 -41655187 + AT_rich Low_complexity Low_complexity 1 21 0 1718 130 40 7 chr4 142633484 142633784 -41654878 + L1MA9 LINE L1 6000 6309 -3 1414 192 10 24 chr4 142633831 142634150 -41654512 + AluJb SINE Alu 2 302 0 1864 153 20 0 chr4 142634261 142634556 -41654106 + AluSx SINE Alu 1 301 -11 239 283 57 78 chr4 142634556 142634789 -41653873 - L1ME LINE L1 -291 5830 5601 228 67 0 0 chr4 142635364 142635394 -41653268 + (A)n Simple_repeat Simple_repeat 1 30 0 189 0 0 0 chr4 142638573 142638594 -41650068 + (T)n Simple_repeat Simple_repeat 1 21 0 1696 139 157 9 chr4 142639868 142640213 -41648449 - MSTD LTR MaLR 0 396 1 234 274 0 16 chr4 142640685 142640747 -41647915 - MIR SINE MIR -19 243 183 322 291 82 18 chr4 142640796 142640906 -41647756 + L2 LINE L2 3147 3263 -9 216 238 171 38 chr4 142641247 142641352 -41647310 + L2 LINE L2 1910 2028 -1286 1331 190 139 0 chr4 142643390 142643721 -41644941 - L1ME1 LINE L1 -7 6159 5783 784 153 0 15 chr4 142644203 142644334 -41644328 + FLAM_C SINE Alu 5 133 0 205 236 91 0 chr4 142644432 142644487 -41644175 - MIR SINE MIR -64 144 85 207 163 20 20 chr4 142645207 142645256 -41643406 + T-rich Low_complexity Low_complexity 5 53 0 1914 124 40 13 chr4 142645453 142645751 -41642911 - AluSx SINE Alu -6 306 1 21 36 0 0 chr4 142645871 142645899 -41642763 + AT_rich Low_complexity Low_complexity 1 28 0 27 49 0 0 chr4 142646584 142646625 -41642037 + AT_rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr4 142647228 142647251 -41641411 + AT_rich Low_complexity Low_complexity 1 23 0 215 292 273 0 chr4 142648408 142648560 -41640102 + MIR SINE MIR 10 206 -56 749 159 13 7 chr4 142648928 142649079 -41639583 - L1P LINE L1 -890 5256 5105 597 209 15 0 chr4 142649093 142649227 -41639435 - L1 LINE L1 -2172 3974 3839 27826 29 2 1 chr4 142649234 142653352 -41635310 - L1PA3 LINE L1 0 6155 2032 237 195 24 0 chr4 142653350 142653391 -41635271 - L1P LINE L1 -2314 3832 3791 * 2157 113 7 7 chr4 142654051 142654352 -41634310 + AluSx SINE Alu 1 301 -11 870 115 8 0 chr4 142655555 142655685 -41632977 - FLAM_C SINE Alu -2 131 1 223 276 92 0 chr4 142656025 142656101 -41632561 + MIR3 SINE MIR 87 169 -39 25 75 0 0 chr4 142656707 142656760 -41631902 + AT_rich Low_complexity Low_complexity 1 53 0 458 311 129 40 chr4 142657175 142657400 -41631262 + MIR SINE MIR 16 260 -2 2217 180 38 11 chr4 142657775 142658224 -41630438 - MER65C LTR ERV1 0 461 1 266 312 87 36 chr4 142659400 142659538 -41629124 + MIR3 SINE MIR 58 202 -6 2460 71 0 0 chr4 142659618 142659914 -41628748 + AluY SINE Alu 1 296 -15 180 0 0 0 chr4 142661038 142661058 -41627604 + (T)n Simple_repeat Simple_repeat 1 20 0 186 259 0 37 chr4 142661368 142661422 -41627240 - L3 LINE CR1 -274 1303 1252 288 239 45 57 chr4 142662630 142662718 -41625944 + MIR SINE MIR 64 150 -58 817 200 117 15 chr4 142663005 142663210 -41625452 + Charlie1 DNA MER1_type 2 227 -2534 649 209 7 7 chr4 142663206 142663345 -41625317 + Charlie1 DNA MER1_type 2622 2760 -1 * 564 194 22 75 chr4 142664144 142664278 -41624384 + FLAM_A SINE Alu 1 127 -6 24 0 0 0 chr4 142664591 142664615 -41624047 + AT_rich Low_complexity Low_complexity 1 24 0 1198 280 78 25 chr4 142664678 142665150 -41623512 - MLT1J LTR MaLR 0 511 15 27 81 0 11 chr4 142665381 142665416 -41623246 + AT_rich Low_complexity Low_complexity 1 35 -51 742 161 25 0 chr4 142665416 142665534 -41623128 + FLAM_A SINE Alu 1 121 -12 27 81 0 11 chr4 142665534 142665585 -41623077 + AT_rich Low_complexity Low_complexity 35 86 0 2029 148 0 3 chr4 142666101 142666404 -41622258 - AluSx SINE Alu -10 302 1 22 80 0 0 chr4 142666729 142666779 -41621883 + AT_rich Low_complexity Low_complexity 1 50 0 1969 100 4 4 chr4 142666782 142667052 -41621610 + AluSq SINE Alu 1 270 -43 900 264 50 91 chr4 142667808 142667896 -41620766 - LTR16B LTR ERVL 0 464 374 2400 87 0 0 chr4 142667896 142668194 -41620468 + AluY SINE Alu 1 298 -13 900 264 50 91 chr4 142668194 142668589 -41620073 - LTR16B LTR ERVL -90 374 1 234 0 0 0 chr4 142668678 142668704 -41619958 + (CA)n Simple_repeat Simple_repeat 2 27 0 377 319 99 6 chr4 142668837 142669019 -41619643 - MIR SINE MIR 0 262 64 1301 273 58 19 chr4 142669092 142669451 -41619211 - MER89 LTR ERV1 -1 558 186 1799 188 14 22 chr4 142669451 142669819 -41618843 + MLT1A1 LTR MaLR 1 365 0 260 247 136 0 chr4 142669819 142669900 -41618762 - MER89 LTR ERV1 -467 92 1 38 68 0 0 chr4 142670002 142670075 -41618587 + AT_rich Low_complexity Low_complexity 1 73 0 342 199 23 23 chr4 142670082 142670213 -41618449 + (TA)n Simple_repeat Simple_repeat 2 132 0 310 200 29 0 chr4 142670374 142670444 -41618218 + MLT1J LTR MaLR 73 144 -367 2324 121 16 29 chr4 142670444 142670824 -41617838 - THE1C LTR MaLR 0 375 1 230 100 50 0 chr4 142670871 142670911 -41617751 + MLT1J LTR MaLR 429 470 -41 25 51 0 0 chr4 142671305 142671344 -41617318 + AT_rich Low_complexity Low_complexity 1 39 0 1690 160 9 38 chr4 142671998 142672316 -41616346 + AluJo SINE Alu 1 309 -3 1796 163 52 3 chr4 142672898 142673223 -41615439 + MLT1A1 LTR MaLR 1 341 -24 320 60 60 0 chr4 142673215 142673265 -41615397 + MADE1 DNA Mariner 28 80 0 * 1640 141 20 82 chr4 142673757 142674085 -41614577 - AluSx SINE Alu 0 309 1 207 0 0 0 chr4 142674520 142674543 -41614119 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 917 232 48 15 chr4 142674876 142675181 -41613481 + MLT1F1 LTR MaLR 214 567 0 268 222 0 42 chr4 142675182 142675254 -41613408 + MER91 DNA MER1_type 61 129 -61 433 167 0 0 chr4 142675605 142675671 -41612991 + FLAM_A SINE Alu 33 98 -44 2173 103 14 3 chr4 142675875 142676166 -41612496 - AluSp SINE Alu -11 302 9 951 226 33 19 chr4 142676199 142676469 -41612193 + LTR38 LTR ERV1 283 556 0 14344 154 19 19 chr4 142676649 142676981 -41611681 - L1MA1 LINE L1 -156 7565 7234 1892 164 0 0 chr4 142676981 142677280 -41611382 - AluJb SINE Alu 0 312 14 14344 154 19 19 chr4 142677280 142681442 -41607220 - L1MA1 LINE L1 -487 7234 3069 2058 141 0 3 chr4 142681444 142681734 -41606928 - AluSc SINE Alu -18 291 3 12916 173 34 10 chr4 142681736 142684192 -41604470 - L1MA1 LINE L1 -5036 2529 14 279 103 0 0 chr4 142684750 142684789 -41603873 + U6 snRNA snRNA 1 39 -68 757 95 116 0 chr4 142684791 142684938 -41603724 + L1MB2 LINE L1 6007 6170 -1 456 236 0 0 chr4 142685119 142685229 -41603433 + L1MA10 LINE L1 6218 6327 -7 186 279 0 0 chr4 142685282 142685325 -41603337 - MER5A DNA MER1_type 0 189 147 21 57 0 0 chr4 142685675 142685710 -41602952 + AT_rich Low_complexity Low_complexity 1 35 0 288 301 194 38 chr4 142686734 142687265 -41601397 - L2 LINE L2 -2537 777 164 2278 118 3 0 chr4 142687420 142687726 -41600936 + AluSx SINE Alu 1 307 -5 2134 91 4 7 chr4 142687728 142688002 -41600660 + AluSx SINE Alu 1 273 -39 796 123 0 7 chr4 142688075 142688213 -41600449 + L1MB8 LINE L1 5692 5828 -350 1553 89 0 5 chr4 142738213 142738415 -41550247 + AluY SINE Alu 101 301 -10 399 344 110 43 chr4 142738417 142739167 -41549495 - L2 LINE L2 -203 3069 2229 1710 168 7 17 chr4 142739167 142739458 -41549204 + AluJo SINE Alu 8 295 -17 399 344 110 43 chr4 142739458 142739665 -41548997 - L2 LINE L2 -1043 2229 2037 606 180 9 0 chr4 142739938 142740049 -41548613 - L1 LINE L1 -1358 4788 4677 * 1251 174 86 20 chr4 142740047 142740351 -41548311 + L1 LINE L1 4261 4584 -1562 1894 191 12 9 chr4 142740351 142740686 -41547976 - MLT1A1 LTR MaLR -29 336 1 322 313 18 98 chr4 142740686 142740910 -41547752 - L1M3de LINE L1 -5229 1424 1028 347 307 31 61 chr4 142740934 142741097 -41547565 - L1M3de LINE L1 -5219 1434 1277 242 311 81 14 chr4 142741096 142741170 -41547492 - L1M3de LINE L1 -5654 999 921 * 342 238 0 25 chr4 142741175 142741255 -41547407 + MER7A DNA MER2_type 14 89 -257 41081 43 4 0 chr4 142741355 142746398 -41542264 - L1P LINE L1 -1086 5060 1 291 356 99 40 chr4 142747121 142747424 -41541238 + L3 LINE CR1 58 378 -1199 456 335 97 50 chr4 142747440 142747627 -41541035 - L2 LINE L2 -5 3267 3090 2372 83 0 3 chr4 142747627 142747929 -41540733 + AluY SINE Alu 1 301 -10 456 335 97 50 chr4 142747929 142748081 -41540581 - L2 LINE L2 -182 3090 2912 288 278 161 25 chr4 142748717 142748879 -41539783 - MIR SINE MIR -21 241 58 2213 105 3 7 chr4 142749068 142749362 -41539300 - AluSq SINE Alu -17 296 4 23 0 0 0 chr4 142749982 142750005 -41538657 + AT_rich Low_complexity Low_complexity 1 23 0 874 195 13 0 chr4 142750041 142750195 -41538467 + FRAM SINE Alu 2 157 -19 266 314 58 50 chr4 142751721 142751842 -41536820 - L2 LINE L2 -1 3271 3150 2221 93 14 0 chr4 142752150 142752439 -41536223 - AluSc SINE Alu -8 301 9 230 272 86 0 chr4 142753695 142753776 -41534886 + L2 LINE L2 2974 3061 -211 228 208 123 58 chr4 142755943 142756097 -41532565 + MER103 DNA DNA 1 164 -2 5998 142 47 14 chr4 142757489 142759597 -41529065 - L1MA3 LINE L1 0 6305 4125 25 51 0 0 chr4 142759877 142759916 -41528746 + AT_rich Low_complexity Low_complexity 1 39 0 29 0 0 0 chr4 142761058 142761087 -41527575 + AT_rich Low_complexity Low_complexity 1 29 0 1629 160 30 4 chr4 142761950 142762212 -41526450 - AluJo SINE Alu -30 282 14 247 170 0 64 chr4 142762216 142762263 -41526399 - Alu SINE Alu -259 44 1 834 153 249 0 chr4 142762314 142762503 -41526159 + MER46A DNA MER2_type 1 236 0 21 36 0 0 chr4 142762547 142762575 -41526087 + AT_rich Low_complexity Low_complexity 1 28 0 2005 128 14 0 chr4 142764256 142764538 -41524124 - AluSx SINE Alu -26 286 1 319 339 101 37 chr4 142766617 142766835 -41521827 - MIR SINE MIR -1 261 30 242 269 120 60 chr4 142766960 142767127 -41521535 - L2 LINE L2 -1388 1926 1750 1296 289 49 54 chr4 142767657 142768242 -41520420 - L2 LINE L2 -2 3311 2724 880 125 23 0 chr4 142770109 142770237 -41518425 - AluSg SINE Alu -179 131 1 3658 104 16 8 chr4 142770246 142771010 -41517652 - L1PB1 LINE L1 0 5975 5120 1432 226 51 33 chr4 142771018 142771199 -41517463 - L1PB1 LINE L1 -939 5031 4855 2352 81 0 3 chr4 142771199 142771497 -41517165 - AluY SINE Alu -14 297 1 1432 226 51 33 chr4 142771497 142771744 -41516918 - L1PB1 LINE L1 -1115 4855 4595 1047 177 0 11 chr4 142771844 142772019 -41516643 + MER7A DNA MER2_type 164 336 0 468 269 28 7 chr4 142772022 142772163 -41516499 - L1PB1 LINE L1 -5737 154 11 195 367 86 22 chr4 142772187 142772326 -41516336 + L3 LINE CR1 1355 1502 -75 705 224 33 49 chr4 142772337 142772520 -41516142 + MIR3 SINE MIR 19 198 -10 2278 93 30 6 chr4 142773174 142773507 -41515155 + L1PB1 LINE L1 5811 6151 0 207 209 23 0 chr4 142774680 142774723 -41513939 - L2 LINE L2 0 3313 3270 1106 211 79 46 chr4 142776660 142776945 -41511717 + LTR56 LTR ERV1 1 306 -139 2285 165 31 0 chr4 142776945 142777364 -41511298 + MSTB1 LTR MaLR 1 432 0 1106 211 79 46 chr4 142777364 142777509 -41511153 + LTR56 LTR ERV1 306 445 0 25 65 0 0 chr4 142777543 142777589 -41511073 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr4 142777713 142777736 -41510926 + AT_rich Low_complexity Low_complexity 1 23 0 322 275 228 30 chr4 142779642 142779809 -41508853 + MIR3 SINE MIR 9 208 0 383 275 0 0 chr4 142780068 142780159 -41508503 + L2 LINE L2 3223 3313 0 193 362 29 29 chr4 142780251 142780389 -41508273 + L2 LINE L2 2898 3035 -237 2487 171 59 6 chr4 142780782 142781257 -41507405 - MLT1D LTR MaLR -1 504 5 495 284 58 26 chr4 142782054 142782244 -41506418 - MIR3 SINE MIR -7 201 6 217 251 222 0 chr4 142784808 142784890 -41503772 - MIR3 SINE MIR -5 203 103 1901 204 81 26 chr4 142785120 142785579 -41503083 - L1ME1 LINE L1 -16 6150 5659 530 90 13 0 chr4 142785579 142785657 -41503005 + MADE1 DNA Mariner 2 80 0 1901 204 81 26 chr4 142785657 142785702 -41502960 - L1ME1 LINE L1 -507 5659 5618 714 257 7 0 chr4 142787784 142787936 -41500726 + MER63A DNA MER1_type 57 209 -1 220 141 51 64 chr4 142788732 142788810 -41499852 + A-rich Low_complexity Low_complexity 3 79 0 291 260 0 0 chr4 142789170 142789243 -41499419 + HAL1 LINE L1 1516 1588 -919 2401 63 0 22 chr4 142789529 142789846 -41498816 + AluY SINE Alu 1 310 -1 941 186 33 65 chr4 142790237 142790452 -41498210 + MER20 DNA MER1_type 6 213 -6 180 111 0 0 chr4 142791422 142791449 -41497213 + (A)n Simple_repeat Simple_repeat 1 27 0 1695 181 0 7 chr4 142791636 142791924 -41496738 + AluJo SINE Alu 1 286 -26 2162 211 74 18 chr4 142791996 142792485 -41496177 + LTR31 LTR ERV1 104 619 0 1945 169 31 13 chr4 142792994 142793442 -41495220 + MER89 LTR ERV1 1 556 -3 227 316 84 21 chr4 142794599 142794694 -41493968 - L2 LINE L2 -5 3308 3208 213 39 0 0 chr4 142794753 142794779 -41493883 + (TG)n Simple_repeat Simple_repeat 1 26 0 2030 139 0 10 chr4 142795116 142795418 -41493244 - AluSx SINE Alu -13 299 1 516 257 50 0 chr4 142796170 142796310 -41492352 + MER103 DNA DNA 18 164 -2 414 318 47 8 chr4 142797611 142797740 -41490922 - L2 LINE L2 0 3272 3139 * 486 246 8 8 chr4 142797739 142797857 -41490805 + L2 LINE L2 3190 3307 -6 484 225 8 16 chr4 142797857 142797986 -41490676 - L1MEd LINE L1 -5302 817 690 228 35 0 0 chr4 142798098 142798127 -41490535 + (CAA)n Simple_repeat Simple_repeat 2 30 0 207 0 0 0 chr4 142798764 142798787 -41489875 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 2209 121 67 36 chr4 142799545 142799933 -41488729 + MSTA LTR MaLR 1 400 -28 415 0 36 0 chr4 142799933 142799988 -41488674 + (TA)n Simple_repeat Simple_repeat 1 57 0 495 50 0 0 chr4 142800007 142800067 -41488595 - L1PA5 LINE L1 -70 6084 6025 258 71 143 0 chr4 142800067 142800109 -41488553 + MSTA LTR MaLR 381 428 0 1771 180 7 7 chr4 142800910 142801205 -41487457 - AluJb SINE Alu -17 295 1 26768 138 12 14 chr4 142801366 142807784 -41480878 + L1PA7 LINE L1 1 6467 -2 2859 184 12 10 chr4 142810630 142811145 -41477517 + MLT2B1 LTR ERVL 3 518 -2 570 286 19 12 chr4 142812034 142812195 -41476467 + MER5B DNA MER1_type 1 162 -16 21 0 0 0 chr4 142812213 142812234 -41476428 + AT_rich Low_complexity Low_complexity 1 21 0 2157 191 6 2 chr4 142812518 142812909 -41475753 - MLT1B LTR MaLR -3 393 1 21 36 0 0 chr4 142812965 142812993 -41475669 + AT_rich Low_complexity Low_complexity 1 28 0 5610 175 37 27 chr4 142813444 142814252 -41474410 - L1MC3 LINE L1 0 7785 6987 1219 228 26 61 chr4 142814252 142814630 -41474032 + MLT1A1 LTR MaLR 1 365 0 1959 184 55 21 chr4 142814639 142815057 -41473605 - MSTB1 LTR MaLR 0 432 1 5610 175 37 27 chr4 142815057 142815417 -41473245 - L1MC3 LINE L1 -805 6980 6595 26 30 0 0 chr4 142815418 142815451 -41473211 + AT_rich Low_complexity Low_complexity 1 33 0 1973 155 22 11 chr4 142815451 142815813 -41472849 - L1PA16 LINE L1 -9 6157 5792 1592 112 29 62 chr4 142815813 142816089 -41472573 + L1PA16 LINE L1 5514 5780 -386 * 1706 164 26 167 chr4 142816085 142816695 -41471967 - L1MC3 LINE L1 -1762 6023 5500 277 333 0 0 chr4 142816708 142816786 -41471876 - LTR33 LTR ERVL -70 451 374 614 333 21 42 chr4 142816816 142817104 -41471558 - LTR33 LTR ERVL -226 295 14 431 274 83 18 chr4 142817920 142818088 -41470574 + L2 LINE L2 1870 2048 -1266 777 289 10 0 chr4 142818089 142818286 -41470376 + MIR SINE MIR 28 226 -36 423 178 156 0 chr4 142818312 142818402 -41470260 + MER63 DNA MER1_type 1 730 -332 34 55 0 0 chr4 142818404 142818459 -41470203 + AT_rich Low_complexity Low_complexity 1 55 0 12894 206 62 23 chr4 142818462 142823214 -41465448 - L1PA16 LINE L1 -9 6860 1803 243 0 0 0 chr4 142823214 142823241 -41465421 + (TG)n Simple_repeat Simple_repeat 2 28 0 12894 206 62 23 chr4 142823241 142823729 -41464933 - L1PA16 LINE L1 -5066 1803 1336 472 216 0 0 chr4 142823719 142823807 -41464855 - L1PA16 LINE L1 -5290 1559 1472 * 288 315 43 52 chr4 142823807 142824134 -41464528 - L1PA16 LINE L1 -5286 1563 1240 332 274 12 0 chr4 142824225 142824309 -41464353 - L1M2 LINE L1 -6752 97 13 1793 189 93 5 chr4 142824396 142824815 -41463847 - L1M4 LINE L1 -448 5670 5215 185 326 22 11 chr4 142824815 142824904 -41463758 + L2 LINE L2 2186 2275 -1039 296 346 0 0 chr4 142825184 142825285 -41463377 + L2 LINE L2 2687 2787 -527 512 367 14 14 chr4 142825296 142825506 -41463156 + L3 LINE CR1 1366 1575 -2 25 31 0 0 chr4 142826055 142826087 -41462575 + AT_rich Low_complexity Low_complexity 1 32 0 191 333 0 58 chr4 142826639 142826726 -41461936 + L2 LINE L2 529 610 -2704 1787 187 25 22 chr4 142826940 142827304 -41461358 + MLT1A1 LTR MaLR 1 365 0 3641 103 13 24 chr4 142827393 142827947 -41460715 + LTR14 LTR ERVK 1 548 0 38 39 0 0 chr4 142828139 142828191 -41460471 + AT_rich Low_complexity Low_complexity 1 52 0 478 309 73 33 chr4 142828343 142828644 -41460018 - L1M4 LINE L1 -1971 4175 3863 284 98 98 0 chr4 142828659 142828761 -41459901 + (TA)n Simple_repeat Simple_repeat 2 113 0 1767 253 62 19 chr4 142828936 142829619 -41459043 - L1M4 LINE L1 -945 5135 4424 226 250 0 0 chr4 142829684 142829736 -41458926 + MLT1B LTR MaLR 1 52 -338 736 260 72 39 chr4 142829739 142830316 -41458346 - L1ME LINE L1 -4846 1415 777 2306 84 0 17 chr4 142830316 142830613 -41458049 - AluSx SINE Alu -20 292 1 736 260 72 39 chr4 142830613 142830693 -41457969 - L1ME LINE L1 -5484 777 701 303 225 107 112 chr4 142830865 142831043 -41457619 + L3 LINE CR1 1088 1264 -313 321 271 163 26 chr4 142832430 142832585 -41456077 + MER5A DNA MER1_type 14 178 0 218 393 44 7 chr4 142832703 142832838 -41455824 - L2 LINE L2 0 3313 3174 2127 188 34 7 chr4 142832973 142833387 -41455275 + MSTB LTR MaLR 2 426 0 5000 196 58 36 chr4 142833387 142833576 -41455086 + MSTB-int LTR MaLR 1 184 -1396 1926 133 0 0 chr4 142833576 142833847 -41454815 + AluSx SINE Alu 40 310 -2 5000 196 58 36 chr4 142833847 142835105 -41453557 + MSTB-int LTR MaLR 184 1566 -14 2158 177 28 53 chr4 142835118 142835311 -41453351 + MSTB LTR MaLR 2 198 -228 7748 19 2 0 chr4 142835311 142836574 -41452088 - L1PA4 LINE L1 -8 6147 4884 2158 177 28 53 chr4 142836574 142836816 -41451846 + MSTB LTR MaLR 198 426 0 24 0 0 0 chr4 142837428 142837452 -41451210 + AT_rich Low_complexity Low_complexity 1 24 0 210 305 85 53 chr4 142837751 142838033 -41450629 - L2 LINE L2 -1124 2190 1900 24 32 0 0 chr4 142838542 142838573 -41450089 + AT_rich Low_complexity Low_complexity 1 31 0 2271 91 3 7 chr4 142839127 142839436 -41449226 + AluSc SINE Alu 1 308 -1 1005 188 25 15 chr4 142839436 142839633 -41449029 + L1MC1 LINE L1 6128 6326 -7 25 31 0 0 chr4 142840436 142840468 -41448194 + AT_rich Low_complexity Low_complexity 1 32 0 1513 174 68 11 chr4 142840624 142840889 -41447773 + AluJo SINE Alu 6 285 -27 40 0 0 0 chr4 142840889 142840929 -41447733 + AT_rich Low_complexity Low_complexity 1 40 0 25 51 0 0 chr4 142841003 142841042 -41447620 + AT_rich Low_complexity Low_complexity 1 39 0 1032 231 67 50 chr4 142841076 142841553 -41447109 + L1M4 LINE L1 3839 4323 -1823 260 253 139 0 chr4 142841817 142841896 -41446766 - MER5C DNA MER1_type -7 317 228 407 260 10 0 chr4 142841908 142842004 -41446658 - MER5C DNA MER1_type -200 124 28 2063 100 0 0 chr4 142842647 142842918 -41445744 + AluSc SINE Alu 1 271 -38 486 112 0 61 chr4 142843019 142843117 -41445545 + L1PB1 LINE L1 6060 6151 0 228 67 0 0 chr4 142843117 142843147 -41445515 + (GGAGAA)n Simple_repeat Simple_repeat 1 30 0 1240 117 0 0 chr4 142843156 142843327 -41445335 + AluSg/x SINE Alu 134 304 -8 240 186 0 0 chr4 142843926 142843969 -41444693 + L2 LINE L2 3264 3306 -7 21 0 0 0 chr4 142844089 142844110 -41444552 + AT_rich Low_complexity Low_complexity 1 21 0 230 239 45 15 chr4 142844453 142844520 -41444142 - MLT1K LTR MaLR -4 584 516 187 103 51 0 chr4 142845571 142845610 -41443052 + (TTG)n Simple_repeat Simple_repeat 2 42 0 258 288 0 0 chr4 142845693 142845752 -41442910 + MIR SINE MIR 204 262 0 1343 319 103 69 chr4 142845773 142847254 -41441408 + L1MC/D LINE L1 2997 4426 -1720 1584 138 0 0 chr4 142847254 142847500 -41441162 + L1PA16 LINE L1 5912 6157 -9 1343 319 103 69 chr4 142847500 142847885 -41440777 + L1MC/D LINE L1 4426 4796 -1350 333 0 0 0 chr4 142847885 142847922 -41440740 + (TA)n Simple_repeat Simple_repeat 1 37 0 1343 319 103 69 chr4 142847922 142848179 -41440483 + L1MC/D LINE L1 4796 5193 -953 493 193 53 58 chr4 142848232 142848375 -41440287 + L1MC/D LINE L1 5273 5416 -2392 1499 197 16 23 chr4 142848375 142848679 -41439983 + AluJo SINE Alu 1 302 -10 493 193 53 58 chr4 142848679 142848706 -41439956 + L1MC/D LINE L1 5416 5442 -2366 2002 157 13 34 chr4 142850388 142850771 -41437891 - THE1C LTR MaLR 0 375 1 180 175 100 0 chr4 142851121 142851161 -41437501 + L2 LINE L2 3270 3313 0 1243 46 0 0 chr4 142851195 142851346 -41437316 - L1PA7 LINE L1 -8 6146 5996 6131 161 6 12 chr4 142851359 142853320 -41435342 + L1PB1 LINE L1 4195 6142 -9 1443 151 62 30 chr4 142853332 142853637 -41435025 + MSTA-int LTR MaLR 1337 1651 0 765 110 0 0 chr4 142853637 142853746 -41434916 + MSTA LTR MaLR 1 109 -319 990 115 127 0 chr4 142853760 142853917 -41434745 + MSTA LTR MaLR 252 428 0 4135 131 12 6 chr4 142853917 142854557 -41434105 + L1PA15 LINE L1 5489 6132 -33 241 254 45 0 chr4 142854569 142854629 -41434033 - L2 LINE L2 -9 3304 3242 918 257 16 37 chr4 142854629 142854874 -41433788 + MIR SINE MIR 1 240 -22 487 279 77 73 chr4 142854868 142855155 -41433507 - L2 LINE L2 -44 3269 2982 * 3519 222 34 19 chr4 142855594 142856364 -41432298 - LTR39 LTR ERV1 0 783 3 1022 188 23 28 chr4 142856718 142856936 -41431726 - MER20 DNA MER1_type 0 219 3 1955 152 41 39 chr4 142857218 142857581 -41431081 + THE1B LTR MaLR 1 364 0 1533 225 72 25 chr4 142858470 142858914 -41429748 + MLT1C LTR MaLR 3 467 0 352 371 70 33 chr4 142858915 142859462 -41429200 - L2 LINE L2 -165 3107 2540 261 212 30 0 chr4 142859498 142859564 -41429098 - MADE1 DNA Mariner -12 68 1 280 300 44 11 chr4 142860023 142860113 -41428549 + MLT1J LTR MaLR 105 197 -314 744 303 76 37 chr4 142860416 142860849 -41427813 - MLT1J2 LTR MaLR 0 450 1 24 32 0 0 chr4 142861021 142861052 -41427610 + AT_rich Low_complexity Low_complexity 1 31 0 285 331 93 35 chr4 142861708 142862052 -41426610 - L2 LINE L2 -697 2617 2254 2734 10 0 0 chr4 142862131 142862441 -41426221 + L1PA2 LINE L1 5846 6155 0 22 0 0 0 chr4 142862912 142862934 -41425728 + AT_rich Low_complexity Low_complexity 1 22 0 202 188 0 0 chr4 142863003 142863035 -41425627 + polypyrimidine Low_complexity Low_complexity 3 34 0 1067 265 46 88 chr4 142863252 142863865 -41424797 - L1ME LINE L1 -393 5777 5198 1869 154 10 6 chr4 142863865 142864176 -41424486 - AluJo SINE Alu 0 312 1 1067 265 46 88 chr4 142864176 142864359 -41424303 - L1ME LINE L1 -972 5198 5009 656 288 74 70 chr4 142864393 142864589 -41424073 - LTR16A1 LTR ERVL 0 457 258 1044 198 53 5 chr4 142864589 142864796 -41423866 + MER20 DNA MER1_type 2 218 -1 656 288 74 70 chr4 142864796 142864898 -41423764 - LTR16A1 LTR ERVL -199 258 158 1763 149 55 115 chr4 142865248 142865664 -41422998 + MSTD LTR MaLR 6 396 0 352 242 65 24 chr4 142865994 142866118 -41422544 - HERV16 LTR ERVL -610 4875 4747 331 355 0 9 chr4 142866165 142866275 -41422387 - HERV16 LTR ERVL -3411 2243 2135 1309 335 72 52 chr4 142866281 142867680 -41420982 - HERV16 LTR ERVL -3443 1553 499 273 299 71 16 chr4 142867734 142867861 -41420801 + L1MC4 LINE L1 7606 7739 -303 272 321 9 0 chr4 142868041 142868153 -41420509 + L1MC4 LINE L1 7930 8042 0 12554 25 1 0 chr4 142868188 142869681 -41418981 - L1PA3 LINE L1 -1421 4725 3232 7562 33 0 0 chr4 142869682 142871115 -41417547 + L1PA3 LINE L1 4723 6155 0 278 313 45 56 chr4 142872047 142872245 -41416417 - L2 LINE L2 -1 3312 3117 314 298 11 11 chr4 142874193 142874287 -41414375 + L1MC4 LINE L1 6614 6707 -1335 1570 151 13 47 chr4 142876724 142877022 -41411640 - AluJo SINE Alu -16 296 9 1200 190 49 54 chr4 142877133 142877171 -41411491 - MLT2B1 LTR ERVL 0 554 517 312 27 0 0 chr4 142877171 142877208 -41411454 + (TA)n Simple_repeat Simple_repeat 1 37 0 1200 190 49 54 chr4 142877208 142877624 -41411038 - MLT2B1 LTR ERVL -37 517 1 1897 211 33 21 chr4 142878201 142878622 -41410040 + MLT1B-int LTR MaLR 937 1362 -9 1621 195 5 77 chr4 142878633 142879049 -41409613 + MLT1B LTR MaLR 4 389 -1 4760 157 30 48 chr4 142879077 142879718 -41408944 + L1PA16 LINE L1 4618 5269 -897 246 32 0 0 chr4 142879718 142879749 -41408913 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2084 115 4 0 chr4 142879752 142880031 -41408631 - AluSx SINE Alu -32 280 1 4760 157 30 48 chr4 142880031 142880962 -41407700 + L1PA16 LINE L1 5271 6163 -3 1615 161 30 0 chr4 142880973 142881272 -41407390 - L1MA9 LINE L1 0 6312 6005 2387 62 3 0 chr4 142882538 142882867 -41405795 - AluY SINE Alu 0 311 1 184 258 76 30 chr4 142883252 142883318 -41405344 + MIR SINE MIR 63 131 -131 200 86 29 0 chr4 142883347 142883382 -41405280 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 537 256 0 0 chr4 142883985 142884102 -41404560 - MIR SINE MIR 0 262 146 186 71 0 0 chr4 142884499 142884527 -41404135 + (CAAT)n Simple_repeat Simple_repeat 4 31 0 440 271 51 8 chr4 142884527 142884645 -41404017 - L2 LINE L2 -14 3258 3136 379 324 49 36 chr4 142884788 142885013 -41403649 - L2 LINE L2 -1377 1937 1710 25 0 0 0 chr4 142885300 142885325 -41403337 + AT_rich Low_complexity Low_complexity 1 25 0 198 0 0 0 chr4 142886127 142886149 -41402513 + (A)n Simple_repeat Simple_repeat 1 22 0 306 300 124 90 chr4 142886774 142887628 -41401034 + L1M2 LINE L1 469 1289 -5560 643 48 0 0 chr4 142892905 142892989 -41395673 + L1PA7 LINE L1 6071 6154 0 4200 120 7 70 chr4 142893461 142894234 -41394428 - L1PA14 LINE L1 -3 6158 5435 506 247 110 7 chr4 142895327 142895481 -41393181 + MIR SINE MIR 43 212 -50 23 0 0 0 chr4 142895516 142895539 -41393123 + AT_rich Low_complexity Low_complexity 1 23 0 414 306 132 18 chr4 142895883 142896102 -41392560 - MIR SINE MIR -5 257 14 500 198 0 10 chr4 142896102 142896198 -41392464 - MLT1D LTR MaLR -56 449 355 721 86 0 34 chr4 142896199 142896316 -41392346 - L1PB1 LINE L1 0 6151 6039 943 188 0 12 chr4 142896591 142896756 -41391906 - FAM SINE Alu -9 166 4 219 36 0 0 chr4 142897089 142897117 -41391545 + (TTG)n Simple_repeat Simple_repeat 2 29 0 473 324 81 0 chr4 142897294 142897442 -41391220 + MIR SINE MIR 26 185 -77 929 159 0 0 chr4 142897443 142897594 -41391068 - MLT1D LTR MaLR -2 503 353 13507 197 36 27 chr4 142897601 142901618 -41387044 - L1PB1 LINE L1 0 6867 2557 1869 80 11 11 chr4 142901618 142901881 -41386781 - L1PA7 LINE L1 -15 6139 5877 13507 197 36 27 chr4 142901881 142904457 -41384205 - L1PB1 LINE L1 -4310 2557 6 1105 184 142 45 chr4 142904494 142904831 -41383831 - MLT1D LTR MaLR -135 370 1 356 203 0 0 chr4 142904831 142904900 -41383762 + MIR SINE MIR 180 248 -14 1563 164 55 33 chr4 142904955 142905469 -41383193 - MER51A LTR ERV1 -16 618 1 22 70 0 0 chr4 142906714 142906757 -41381905 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr4 142906986 142907007 -41381655 + AT_rich Low_complexity Low_complexity 1 21 0 203 133 22 0 chr4 142907325 142907370 -41381292 + (TA)n Simple_repeat Simple_repeat 2 47 0 345 256 56 72 chr4 142907382 142907562 -41381100 + L1ME4a LINE L1 5933 6109 -12 27738 45 2 0 chr4 142909082 142913438 -41375224 - L1PA5 LINE L1 -9 6145 1784 12332 87 1 0 chr4 142913449 142915169 -41373493 + L1PA5 LINE L1 64 1784 -4362 22 0 0 0 chr4 142915993 142916015 -41372647 + AT_rich Low_complexity Low_complexity 1 22 0 204 229 0 0 chr4 142916404 142916452 -41372210 + L2 LINE L2 3265 3312 -1 24 32 0 0 chr4 142916726 142916757 -41371905 + AT_rich Low_complexity Low_complexity 1 31 0 256 248 211 37 chr4 142917397 142917506 -41371156 - MIR SINE MIR -12 250 123 537 115 0 0 chr4 142917661 142917816 -41370846 + L1PA16 LINE L1 5968 6157 -9 21 0 0 0 chr4 142917816 142917837 -41370825 + AT_rich Low_complexity Low_complexity 1 21 0 1090 181 135 45 chr4 142918045 142918311 -41370351 + AluJo SINE Alu 1 290 -12 446 250 26 81 chr4 142920347 142920619 -41368043 + Charlie4 DNA MER1_type 19 275 -1686 531 96 0 0 chr4 142920632 142920715 -41367947 - L1MB8 LINE L1 -3 6175 6093 3049 168 34 10 chr4 142920721 142921336 -41367326 - L1MB4 LINE L1 0 6180 5551 705 199 19 6 chr4 142921336 142921492 -41367170 + Charlie4 DNA MER1_type 1804 1961 0 388 214 175 10 chr4 142922155 142922258 -41366404 - L2 LINE L2 -10 3303 3184 41990 40 5 3 chr4 142922386 142928565 -41360097 + L1PA3 LINE L1 2 6155 0 323 305 78 85 chr4 142928748 142928811 -41359851 - L2 LINE L2 -465 2849 2787 1367 101 101 0 chr4 142928811 142929020 -41359642 + MER30 DNA MER1_type 1 230 0 323 305 78 85 chr4 142929020 142929106 -41359556 - L2 LINE L2 -527 2787 2702 1499 214 30 56 chr4 142929106 142929479 -41359183 - MLT1A1 LTR MaLR -2 363 1 323 305 78 85 chr4 142929479 142929751 -41358911 - L2 LINE L2 -612 2702 2430 434 267 207 13 chr4 142930098 142930248 -41358414 + MIR3 SINE MIR 25 203 -5 21 36 0 0 chr4 142930735 142930763 -41357899 + AT_rich Low_complexity Low_complexity 1 28 0 2226 162 38 50 chr4 142930787 142931342 -41357320 - L1MB8 LINE L1 -1 6177 5630 2045 132 0 3 chr4 142933225 142933521 -41355141 + AluSx SINE Alu 1 295 -17 599 279 19 12 chr4 142933767 142933928 -41354734 - MER5B DNA MER1_type -11 167 6 1785 213 48 77 chr4 142933967 142934511 -41354151 + MLT1E LTR MaLR 58 585 -8 1879 158 14 0 chr4 142934702 142934999 -41353663 + AluSx SINE Alu 3 303 -9 2905 9 0 0 chr4 142935167 142935485 -41353177 + AluYb8 SINE Alu 1 318 0 23 0 0 0 chr4 142935511 142935534 -41353128 + AT_rich Low_complexity Low_complexity 1 23 0 1534 210 0 4 chr4 142936838 142937110 -41351552 + AluJo SINE Alu 2 272 -40 1420 202 18 22 chr4 142938565 142938842 -41349820 + AluJo SINE Alu 1 276 -36 1861 138 61 28 chr4 142938842 142939205 -41349457 - THE1C LTR MaLR 0 375 1 9433 131 29 19 chr4 142939206 142940865 -41347797 - THE1C-int LTR MaLR -1 1579 1 2115 140 30 19 chr4 142940865 142941236 -41347426 - THE1C LTR MaLR 0 375 1 2002 158 70 55 chr4 142941818 142942275 -41346387 - MLT2C2 LTR ERVL 0 464 1 246 62 0 0 chr4 142943421 142943453 -41345209 + (CA)n Simple_repeat Simple_repeat 1 32 0 29 0 0 0 chr4 142943642 142943671 -41344991 + AT_rich Low_complexity Low_complexity 1 29 0 4395 197 32 30 chr4 142943690 142945560 -41343102 - L1MA3 LINE L1 -28 6277 4409 1676 100 5 0 chr4 142946949 142947159 -41341503 - AluSp SINE Alu -19 294 84 356 319 90 56 chr4 142947314 142947580 -41341082 - L2 LINE L2 -6 3266 2992 216 247 75 110 chr4 142947717 142947863 -41340799 + MIR SINE MIR 74 214 -48 594 290 19 18 chr4 142948119 142948316 -41340346 - MIR3 SINE MIR -7 201 2 306 188 0 25 chr4 142948326 142948406 -41340256 + MER116 DNA Mariner 3 80 0 212 86 29 0 chr4 142949126 142949161 -41339501 + (TTATA)n Simple_repeat Simple_repeat 4 39 0 191 88 29 0 chr4 142950862 142950896 -41337766 + (TTTTTA)n Simple_repeat Simple_repeat 2 36 0 180 0 0 0 chr4 142951278 142951298 -41337364 + (T)n Simple_repeat Simple_repeat 1 20 0 205 173 173 62 chr4 142951604 142951685 -41336977 - MIR SINE MIR -113 149 60 960 189 22 63 chr4 142952011 142952233 -41336429 + MER20 DNA MER1_type 1 213 -6 212 374 48 12 chr4 142953366 142953532 -41335130 + L2 LINE L2 2217 2388 -926 187 293 0 0 chr4 142954003 142954044 -41334618 - MIR SINE MIR -18 244 204 360 266 43 0 chr4 142954113 142954207 -41334455 + L2 LINE L2 3216 3313 0 559 304 63 56 chr4 142954481 142954703 -41333959 - LTR67 LTR ERVL -239 318 92 1533 96 50 0 chr4 142954703 142954922 -41333740 - MER30 DNA MER1_type 0 230 1 559 304 63 56 chr4 142954922 142954985 -41333677 - LTR67 LTR ERVL -465 92 31 863 256 193 16 chr4 142955188 142955509 -41333153 + L2 LINE L2 2936 3313 0 986 182 0 0 chr4 142956119 142956267 -41332395 + AluSg/x SINE Alu 132 279 -33 294 29 0 0 chr4 142956267 142956302 -41332360 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 661 278 141 9 chr4 142957375 142957602 -41331060 - MIR SINE MIR -1 261 5 22 0 0 0 chr4 142959740 142959762 -41328900 + AT_rich Low_complexity Low_complexity 1 22 0 389 313 189 4 chr4 142961194 142961421 -41327241 + L2 LINE L2 3034 3302 -11 279 323 157 10 chr4 142961597 142961795 -41326867 + MIR SINE MIR 36 262 0 7539 31 3 0 chr4 142961965 142962922 -41325740 + L1PA4 LINE L1 5196 6155 0 492 208 0 0 chr4 142963614 142963720 -41324942 + L1MA5A LINE L1 6192 6297 0 202 339 123 31 chr4 142963883 142964013 -41324649 - L2 LINE L2 -227 3045 2904 7412 251 38 38 chr4 142965956 142966727 -41321935 - L1PA12 LINE L1 -3078 4506 3736 2803 19 0 0 chr4 142966727 142967037 -41321625 - AluYb8 SINE Alu -8 310 1 7412 251 38 38 chr4 142967037 142967996 -41320666 - L1PA12 LINE L1 -3848 3736 2778 1344 200 96 7 chr4 142967996 142968266 -41320396 + AluJb SINE Alu 1 294 -18 7412 251 38 38 chr4 142968266 142971048 -41317614 - L1PA12 LINE L1 -4806 2778 1 508 219 53 46 chr4 142971453 142971604 -41317058 - MIR SINE MIR -21 241 90 1958 154 3 0 chr4 142971695 142971993 -41316669 - AluSx SINE Alu -13 299 1 1880 221 114 15 chr4 142972093 142972687 -41315975 - L1MC4 LINE L1 -140 7902 7250 296 230 27 14 chr4 142974508 142974582 -41314080 + MIR3 SINE MIR 112 186 -22 317 327 10 10 chr4 142975709 142975810 -41312852 + L1MC/D LINE L1 5704 5804 -2004 1378 213 135 31 chr4 142976106 142976528 -41312134 + MLT1D LTR MaLR 39 504 -1 1530 170 43 22 chr4 142976882 142977189 -41311473 + AluJo SINE Alu 1 313 0 1984 231 81 76 chr4 142977213 142977539 -41311123 - MER21B LTR ERV1 -48 815 492 2237 131 0 0 chr4 142977539 142977851 -41310811 + AluSx SINE Alu 1 312 0 1984 231 81 76 chr4 142977851 142978335 -41310327 - MER21B LTR ERV1 -371 492 1 366 195 0 0 chr4 142978397 142978474 -41310188 + (CATATA)n Simple_repeat Simple_repeat 4 80 0 32 26 0 0 chr4 142978924 142978963 -41309699 + AT_rich Low_complexity Low_complexity 1 39 0 25 31 0 0 chr4 142979194 142979226 -41309436 + AT_rich Low_complexity Low_complexity 1 32 0 273 246 246 8 chr4 142980049 142980171 -41308491 + MIR SINE MIR 112 262 0 194 296 0 0 chr4 142981306 142981350 -41307312 - MIR SINE MIR -133 75 32 1603 197 27 20 chr4 142981535 142981834 -41306828 + AluJo SINE Alu 1 301 -11 403 118 88 0 chr4 142982079 142982147 -41306515 + THE1C LTR MaLR 1 74 -301 883 49 0 0 chr4 142982152 142982274 -41306388 + THE1B-int LTR MaLR 1459 1580 0 2160 155 28 0 chr4 142982274 142982628 -41306034 + THE1B LTR MaLR 1 364 0 2321 152 54 7 chr4 142982837 142983244 -41305418 - MSTB LTR MaLR 0 426 1 884 128 10 61 chr4 142983244 142983364 -41305298 - MSTB-int LTR MaLR 0 1651 1543 1973 164 7 7 chr4 142983364 142983674 -41304988 + AluSx SINE Alu 1 310 -2 884 128 10 61 chr4 142983674 142983749 -41304913 - MSTB-int LTR MaLR -108 1543 1466 3863 186 2 7 chr4 142983750 142984589 -41304073 + L1 LINE L1 3871 4705 -1441 522 258 86 0 chr4 142985020 142985206 -41303456 + HsTC2 DNA Tc2 6 207 -1691 312 198 60 35 chr4 142985319 142985435 -41303227 + HsTC2 DNA Tc2 1770 1888 -10 627 180 0 7 chr4 142985577 142985716 -41302946 - LTR37A LTR ERV1 0 426 289 688 125 8 17 chr4 142985817 142985937 -41302725 + MSTC LTR MaLR 306 424 -4 699 138 0 9 chr4 142986094 142986210 -41302452 - MER1B DNA MER1_type 0 339 225 1468 88 0 0 chr4 142986240 142986432 -41302230 - AluY SINE Alu -1 310 119 21 36 0 0 chr4 142987080 142987108 -41301554 + AT_rich Low_complexity Low_complexity 1 28 0 244 247 41 93 chr4 142987227 142987324 -41301338 - MIR3 SINE MIR -14 194 103 345 324 27 9 chr4 142987589 142987700 -41300962 + MIR SINE MIR 34 146 -116 2606 61 3 0 chr4 142988006 142988335 -41300327 - L1PA7 LINE L1 0 6154 5825 239 130 0 22 chr4 142989433 142989479 -41299183 + (TG)n Simple_repeat Simple_repeat 2 46 0 264 252 140 37 chr4 142989567 142989674 -41298988 - MIR SINE MIR -77 185 68 667 216 38 5 chr4 142989888 142990056 -41298606 - L1M3 LINE L1 -549 5634 5470 1290 170 16 110 chr4 142990101 142990484 -41298178 + MLT1A1 LTR MaLR 19 365 0 2282 103 0 6 chr4 142990507 142990819 -41297843 - AluSx SINE Alu -2 310 1 684 171 95 0 chr4 142990834 142991036 -41297626 - L1M3 LINE L1 -743 5403 5217 204 337 138 33 chr4 142991054 142991235 -41297427 - MIR SINE MIR -61 201 2 235 237 0 0 chr4 142991265 142991324 -41297338 + A-rich Low_complexity Low_complexity 1 59 0 1008 134 5 49 chr4 142992081 142992304 -41296358 + L1MA4 LINE L1 6087 6299 -1 2051 184 45 47 chr4 142992322 142992828 -41295834 - MLT1D LTR MaLR 0 505 1 406 231 77 0 chr4 142994063 142994180 -41294482 - MIR SINE MIR -114 148 23 267 138 103 0 chr4 142994559 142994617 -41294045 - L1MB2 LINE L1 -4 6167 6104 947 229 140 7 chr4 142994619 142994912 -41293750 - L1MB8 LINE L1 -170 6008 5677 984 182 4 20 chr4 142994920 142995187 -41293475 + L1M3 LINE L1 5237 5499 -681 2090 149 120 8 chr4 142995832 142996215 -41292447 - MSTA LTR MaLR 0 428 3 9356 144 18 21 chr4 142996217 142997798 -41290864 - MSTA-int LTR MaLR 0 1580 4 1620 146 232 11 chr4 142997803 142998152 -41290510 - MSTA LTR MaLR -2 426 1 7652 51 1 1 chr4 142999579 143001361 -41287301 + L1PA5 LINE L1 4420 6154 0 21 36 0 0 chr4 143001814 143001842 -41286820 + AT_rich Low_complexity Low_complexity 1 28 0 7434 29 7 1 chr4 143001889 143003211 -41285451 + L1PA3 LINE L1 4829 6155 0 233 343 0 0 chr4 143003217 143003284 -41285378 - MIR3 SINE MIR -41 167 101 463 278 95 18 chr4 143004660 143004829 -41283833 - MIR SINE MIR -4 258 77 328 228 13 38 chr4 143005802 143005881 -41282781 + MSTB2 LTR MaLR 1 84 -351 1519 259 30 11 chr4 143005990 143006449 -41282213 - L1ME3A LINE L1 -292 6138 5671 660 286 55 65 chr4 143006466 143006884 -41281778 - L1ME3A LINE L1 -816 5590 5182 1967 159 0 6 chr4 143006884 143007198 -41281464 - AluSx SINE Alu 0 312 1 660 286 55 65 chr4 143007198 143007530 -41281132 - L1ME3A LINE L1 -1224 5182 4848 727 265 88 22 chr4 143008204 143008694 -41279968 - L1ME3A LINE L1 -1627 4779 4258 1753 153 178 8 chr4 143008702 143009068 -41279594 + MSTA LTR MaLR 1 428 0 468 242 92 54 chr4 143009400 143009660 -41279002 - L1ME3A LINE L1 -2133 4273 4004 1236 282 79 14 chr4 143009706 143010570 -41278092 - L1ME3A LINE L1 -2487 3919 3000 450 295 78 35 chr4 143010932 143011444 -41277218 - L1ME3A LINE L1 -4634 1953 1420 429 275 81 87 chr4 143011475 143011665 -41276997 - L1ME3A LINE L1 -5177 1232 1043 1991 138 34 0 chr4 143011665 143011962 -41276700 - AluSx SINE Alu -1 311 5 429 275 81 87 chr4 143011962 143012069 -41276593 - L1ME3A LINE L1 -5366 1043 937 302 267 84 30 chr4 143012430 143012561 -41276101 - L1ME3A LINE L1 -5891 505 368 51 17 0 0 chr4 143012766 143012824 -41275838 + AT_rich Low_complexity Low_complexity 1 58 0 1969 104 50 4 chr4 143014365 143014479 -41274183 + AluSx SINE Alu 3 110 -202 243 0 0 0 chr4 143014479 143014506 -41274156 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1969 104 50 4 chr4 143014506 143014671 -41273991 + AluSx SINE Alu 110 295 -17 2065 137 0 0 chr4 143015208 143015500 -41273162 - AluSx SINE Alu -20 292 1 348 321 59 36 chr4 143017198 143017419 -41271243 + L1MEd LINE L1 637 862 -5257 264 156 22 0 chr4 143017535 143017580 -41271082 - MLT1C LTR MaLR 0 390 345 * 1940 177 26 16 chr4 143017569 143017954 -41270708 - MLT1C LTR MaLR -74 393 5 21 95 0 0 chr4 143018273 143018336 -41270326 + AT_rich Low_complexity Low_complexity 1 63 0 471 255 35 21 chr4 143018479 143018624 -41270038 + MIR SINE MIR 116 262 0 185 279 76 63 chr4 143018906 143019064 -41269598 - L2 LINE L2 -1870 1444 1285 229 183 14 14 chr4 143019137 143019208 -41269454 + T-rich Low_complexity Low_complexity 3 73 0 202 289 0 40 chr4 143020442 143020518 -41268144 + CT-rich Low_complexity Low_complexity 3 75 0 606 63 0 0 chr4 143020561 143020640 -41268022 + (TTCC)n Simple_repeat Simple_repeat 2 80 0 1526 192 65 0 chr4 143020656 143020831 -41267831 - AluJb SINE Alu -1 311 108 345 100 0 0 chr4 143020831 143020881 -41267781 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 1526 192 65 0 chr4 143020881 143020997 -41267665 - AluJb SINE Alu -204 108 1 207 219 0 0 chr4 143021141 143021182 -41267480 - MIR SINE MIR -2 260 220 2139 137 13 3 chr4 143021827 143022133 -41266529 + AluSx SINE Alu 1 309 -3 2136 119 0 7 chr4 143023024 143023318 -41265344 + AluSq SINE Alu 1 292 -21 2056 113 63 30 chr4 143023619 143023982 -41264680 + THE1C LTR MaLR 1 375 0 9529 108 33 42 chr4 143023982 143025568 -41263094 + THE1C-int LTR MaLR 1 1573 -7 2003 141 53 14 chr4 143025575 143025936 -41262726 + THE1C LTR MaLR 1 375 0 29 47 0 0 chr4 143025967 143026010 -41262652 + AT_rich Low_complexity Low_complexity 1 43 0 252 0 0 0 chr4 143028386 143028414 -41260248 + (T)n Simple_repeat Simple_repeat 1 28 0 2665 52 0 0 chr4 143028460 143028770 -41259892 + AluY SINE Alu 1 310 -1 230 342 170 59 chr4 143028944 143029056 -41259606 - L3 LINE CR1 -3 1574 1476 1925 134 25 0 chr4 143029056 143029356 -41259306 - AluSx SINE Alu 0 307 3 230 342 170 59 chr4 143029356 143029631 -41259031 - L3 LINE CR1 -101 1476 1143 514 310 172 23 chr4 143029736 143030084 -41258578 - L2 LINE L2 -551 2763 2364 455 315 39 34 chr4 143030086 143030264 -41258398 - L3 LINE CR1 -1050 527 349 5927 162 29 16 chr4 143030466 143030945 -41257717 - L1MA5A LINE L1 -2 6937 6466 2095 126 7 0 chr4 143030945 143031238 -41257424 - AluSx SINE Alu -17 295 1 5927 162 29 16 chr4 143031238 143032597 -41256065 - L1MA5A LINE L1 -473 6466 5074 5524 223 31 7 chr4 143032599 143033700 -41254962 - L1MA5A LINE L1 -5655 1134 8 463 253 114 6 chr4 143034418 143034576 -41254086 - Charlie8 DNA MER1_type -2224 193 19 1538 201 11 0 chr4 143035392 143035670 -41252992 + AluJo SINE Alu 14 294 -18 189 107 0 0 chr4 143035834 143035862 -41252800 + (TTA)n Simple_repeat Simple_repeat 1 28 0 338 173 0 55 chr4 143036645 143036772 -41251890 + GA-rich Low_complexity Low_complexity 1 120 0 226 303 16 41 chr4 143037352 143037474 -41251188 - MLT-int LTR MaLR -1614 121 3 642 278 107 16 chr4 143037679 143037931 -41250731 - MLT1H LTR MaLR -272 277 3 860 279 84 82 chr4 143038017 143038391 -41250271 + LTR16C LTR ERVL 71 448 -43 2362 96 3 3 chr4 143038391 143038704 -41249958 - AluSp SINE Alu 0 313 1 860 279 84 82 chr4 143038704 143038745 -41249917 + LTR16C LTR ERVL 448 487 -4 2785 117 44 0 chr4 143038914 143039324 -41249338 - MSTC LTR MaLR 0 428 1 21 0 0 0 chr4 143039630 143039651 -41249011 + AT_rich Low_complexity Low_complexity 1 21 0 1631 196 21 0 chr4 143039656 143039947 -41248715 - AluJo SINE Alu -15 297 1 313 293 102 20 chr4 143039983 143040424 -41248238 - L1MDa LINE L1 -4735 2127 1193 24 0 0 0 chr4 143041220 143041244 -41247418 + AT_rich Low_complexity Low_complexity 1 24 0 802 308 57 24 chr4 143041350 143041733 -41246929 + MLT1K LTR MaLR 145 540 -48 400 267 67 33 chr4 143042160 143042340 -41246322 - MIR SINE MIR -71 191 6 22 0 0 0 chr4 143043861 143043883 -41244779 + AT_rich Low_complexity Low_complexity 1 22 0 1490 183 27 21 chr4 143044370 143044703 -41243959 + L1MA7 LINE L1 5955 6289 -2 25 0 0 0 chr4 143044703 143044728 -41243934 + AT_rich Low_complexity Low_complexity 1 25 0 182 281 134 0 chr4 143045082 143045164 -41243498 + MIR SINE MIR 97 189 -73 2187 234 52 2 chr4 143045178 143045789 -41242873 + L1MB5 LINE L1 4614 5255 -891 6399 65 36 3 chr4 143045792 143046659 -41242003 + L1PA4 LINE L1 5258 6152 -3 799 189 6 0 chr4 143046672 143046836 -41241826 - L1 LINE L1 -3806 2340 2176 3267 157 46 76 chr4 143046936 143047695 -41240967 + L1MB5 LINE L1 5439 6174 0 341 169 0 14 chr4 143047695 143047766 -41240896 + MIR SINE MIR 193 262 0 237 182 91 0 chr4 143048077 143048154 -41240508 - L1ME4a LINE L1 -31 6090 6007 250 216 0 0 chr4 143048566 143048617 -41240045 + L1MA3 LINE L1 6255 6305 0 2124 172 47 51 chr4 143048636 143049143 -41239519 - MLT1D LTR MaLR 0 505 1 4898 159 2 29 chr4 143050040 143050897 -41237765 - MSTA-int LTR MaLR -743 837 4 627 196 307 17 chr4 143050902 143051081 -41237581 - MSTA LTR MaLR -2 424 194 1033 156 133 9 chr4 143051217 143051428 -41237234 - MSTA LTR MaLR -191 237 1 1723 59 0 0 chr4 143052851 143053071 -41235591 + L1P LINE L1 4420 4639 -1507 596 118 21 0 chr4 143053248 143053341 -41235321 + L1MA9 LINE L1 6010 6104 -208 1912 155 23 26 chr4 143053341 143053410 -41235252 - MER47A DNA MER2_type -1957 366 298 1413 110 64 9 chr4 143053410 143053628 -41235034 + MER30 DNA MER1_type 1 230 0 1912 155 23 26 chr4 143053628 143053900 -41234762 - MER47A DNA MER2_type -2025 298 26 712 163 89 0 chr4 143053907 143054042 -41234620 + L1MA9 LINE L1 6100 6246 -66 2804 151 63 32 chr4 143054042 143054598 -41234064 - LTR36 LTR ERV1 0 611 39 11024 28 5 0 chr4 143054712 143056610 -41232052 - L1PA4 LINE L1 -168 5987 4082 210 276 43 110 chr4 143059255 143059418 -41229244 + MIR SINE MIR 24 175 -87 344 335 121 0 chr4 143060025 143060198 -41228464 - MIR SINE MIR -7 255 62 1530 210 10 42 chr4 143060362 143060748 -41227914 + MLT1A2 LTR MaLR 1 374 0 27 62 0 0 chr4 143061019 143061067 -41227595 + AT_rich Low_complexity Low_complexity 1 48 0 372 302 84 34 chr4 143061595 143061774 -41226888 + MIR SINE MIR 21 208 -54 404 225 75 75 chr4 143062069 143062256 -41226406 - L2 LINE L2 -1 3312 3126 657 239 139 0 chr4 143062344 143062545 -41226117 - LTR16A LTR ERVL -19 431 203 4427 116 1 25 chr4 143062724 143063412 -41225250 - L1PB3 LINE L1 0 6154 5483 793 129 0 8 chr4 143063412 143063536 -41225126 - L1P5 LINE L1 -589 5562 5440 772 77 10 0 chr4 143063533 143063637 -41225025 - L1P5 LINE L1 -492 5662 5558 * 2994 171 11 0 chr4 143063638 143064186 -41224476 - L1 LINE L1 -1955 4191 3638 571 129 21 0 chr4 143064555 143064648 -41224014 + L1MA9 LINE L1 6010 6104 -208 1925 152 23 26 chr4 143064648 143064717 -41223945 - MER47A DNA MER2_type -1957 366 298 1373 138 55 0 chr4 143064717 143064935 -41223727 + MER30 DNA MER1_type 1 230 0 1925 152 23 26 chr4 143064935 143065207 -41223455 - MER47A DNA MER2_type -2025 298 26 783 156 85 76 chr4 143065214 143065349 -41223313 + L1MA9 LINE L1 6100 6232 -80 2921 147 56 46 chr4 143065349 143065954 -41222708 - LTR36 LTR ERV1 0 611 1 783 156 85 76 chr4 143065954 143065971 -41222691 + L1MA9 LINE L1 6232 6247 -65 1348 123 48 40 chr4 143065971 143066198 -41222464 - MER30 DNA MER1_type -1 229 1 783 156 85 76 chr4 143066198 143066255 -41222407 + L1MA9 LINE L1 6247 6312 0 189 0 0 0 chr4 143066412 143066433 -41222229 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 507 73 0 0 chr4 143067822 143067890 -41220772 + (TA)n Simple_repeat Simple_repeat 2 69 0 648 0 0 0 chr4 143070549 143070621 -41218041 + (TTTTA)n Simple_repeat Simple_repeat 4 75 0 336 330 121 0 chr4 143071284 143071457 -41217205 - MIR SINE MIR -7 255 62 1538 212 10 42 chr4 143071621 143072007 -41216655 + MLT1A2 LTR MaLR 1 374 0 393 291 84 34 chr4 143072868 143073047 -41215615 + MIR SINE MIR 21 208 -54 365 234 75 75 chr4 143073341 143073529 -41215133 - L2 LINE L2 -1 3312 3125 1050 253 86 18 chr4 143073615 143073951 -41214711 - LTR16A LTR ERVL -19 431 73 288 0 0 0 chr4 143073966 143073998 -41214664 + (TG)n Simple_repeat Simple_repeat 2 33 0 256 267 86 35 chr4 143074002 143074118 -41214544 - L2 LINE L2 -226 3087 2966 205 211 0 0 chr4 143074238 143074276 -41214386 + (TAA)n Simple_repeat Simple_repeat 3 40 0 313 318 58 39 chr4 143074377 143074531 -41214131 - L2 LINE L2 0 3272 3116 892 241 118 47 chr4 143076104 143076485 -41212177 - L1MEc LINE L1 -5935 461 54 3777 102 18 9 chr4 143076741 143076938 -41211724 - MER41A LTR ERV1 0 554 360 4068 161 101 4 chr4 143076938 143077691 -41210971 + LTR1B LTR ERV1 1 826 0 3777 102 18 9 chr4 143077691 143078042 -41210620 - MER41A LTR ERV1 -194 360 1 241 244 49 0 chr4 143078059 143078141 -41210521 - L1M4 LINE L1 -3732 2414 2329 494 229 7 0 chr4 143078208 143078352 -41210310 - L1ME3 LINE L1 -32 6132 5985 258 191 0 0 chr4 143078999 143079041 -41209621 - MER20 DNA MER1_type -3 216 175 304 274 115 29 chr4 143080251 143080459 -41208203 - L1ME3 LINE L1 -508 5613 5388 2372 126 48 0 chr4 143080658 143081016 -41207646 - THE1C LTR MaLR 0 375 1 3011 91 7 11 chr4 143081020 143081473 -41207189 - THE1C-int LTR MaLR -4 1576 1126 409 185 25 0 chr4 143081470 143081551 -41207111 - THE1C-int LTR MaLR -1497 83 1 * 2304 140 11 19 chr4 143081551 143081929 -41206733 - THE1C LTR MaLR 0 375 1 25 0 0 0 chr4 143083145 143083170 -41205492 + AT_rich Low_complexity Low_complexity 1 25 0 181 312 47 65 chr4 143083191 143083361 -41205301 - L2 LINE L2 -132 3181 3015 * 328 279 23 0 chr4 143083337 143083423 -41205239 - L2 LINE L2 -5 3308 3221 439 374 56 23 chr4 143083505 143083847 -41204815 - L2 LINE L2 -357 2957 2605 231 114 0 0 chr4 143084821 143084856 -41203806 + (TA)n Simple_repeat Simple_repeat 1 35 0 318 331 29 14 chr4 143084884 143085023 -41203639 - L1ME4a LINE L1 -1 6120 5980 269 173 123 12 chr4 143086295 143086376 -41202286 + MER51C LTR ERV1 340 429 -211 1986 130 3 23 chr4 143086420 143086728 -41201934 + AluSx SINE Alu 1 302 -10 1474 184 15 8 chr4 143086827 143087113 -41201549 - AluJb SINE Alu 0 312 36 316 327 65 0 chr4 143087767 143087874 -41200788 - MIR SINE MIR -79 129 16 288 385 41 0 chr4 143088039 143088161 -41200501 - MIR SINE MIR -65 143 17 1464 178 38 44 chr4 143088875 143089168 -41199494 - AluJo SINE Alu -21 291 1 24 0 0 0 chr4 143089722 143089746 -41198916 + AT_rich Low_complexity Low_complexity 1 24 0 346 360 51 21 chr4 143090624 143090860 -41197802 - MIR SINE MIR -14 248 6 230 327 27 27 chr4 143091335 143091445 -41197217 - MIR SINE MIR -36 226 117 387 199 54 157 chr4 143091485 143091651 -41197011 + MIR SINE MIR 114 262 0 750 87 0 19 chr4 143091833 143091937 -41196725 + AluY SINE Alu 194 295 -16 31 26 0 0 chr4 143092058 143092096 -41196566 + AT_rich Low_complexity Low_complexity 1 38 0 324 250 43 11 chr4 143092096 143092188 -41196474 - L1ME4a LINE L1 -3 6118 6024 218 289 100 0 chr4 143092315 143092405 -41196257 - L2 LINE L2 -244 3069 2971 301 331 58 39 chr4 143092674 143092828 -41195834 - L2 LINE L2 0 3272 3116 25 0 0 0 chr4 143093635 143093660 -41195002 + AT_rich Low_complexity Low_complexity 1 25 0 936 230 118 35 chr4 143094520 143094894 -41193768 - L1MEc LINE L1 -5938 458 54 1177 109 52 0 chr4 143095153 143095345 -41193317 - MER41B LTR ERV1 0 635 434 1017 173 11 0 chr4 143095345 143095524 -41193138 + LTR1B LTR ERV1 1 181 -645 436 225 0 2 chr4 143095633 143095752 -41192910 - L1ME3 LINE L1 -25 6139 6023 180 0 0 0 chr4 143095882 143095902 -41192760 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 262 167 0 0 chr4 143096436 143096478 -41192184 - MER20 DNA MER1_type -3 216 175 268 274 115 29 chr4 143097676 143097884 -41190778 - L1ME LINE L1 -508 5613 5388 2373 126 48 0 chr4 143098083 143098441 -41190221 - THE1C LTR MaLR 0 375 1 3055 88 7 9 chr4 143098445 143098897 -41189765 - THE1C-int LTR MaLR -4 1576 1126 439 161 25 0 chr4 143098894 143098975 -41189687 - THE1C-int LTR MaLR -1497 83 1 * 1024 159 11 0 chr4 143098975 143099151 -41189511 - THE1C LTR MaLR 0 375 198 319 233 47 23 chr4 143100065 143100151 -41188511 - L1ME4a LINE L1 -16 6105 6018 324 310 20 10 chr4 143101803 143101903 -41186759 - L2 LINE L2 -5 3308 3208 400 357 40 44 chr4 143101971 143102243 -41186419 - L2 LINE L2 -357 2957 2687 240 173 107 13 chr4 143103342 143103417 -41185245 + MER51C LTR ERV1 348 429 -211 1971 121 3 33 chr4 143103461 143103767 -41184895 + AluSx SINE Alu 1 297 -15 1535 183 0 8 chr4 143103864 143104151 -41184511 - AluJb SINE Alu 0 312 36 27 0 0 0 chr4 143104163 143104190 -41184472 + AT_rich Low_complexity Low_complexity 1 27 0 297 321 75 0 chr4 143104787 143104893 -41183769 - MIR SINE MIR -79 129 16 288 385 41 0 chr4 143105060 143105182 -41183480 - MIR SINE MIR -65 143 17 301 337 0 12 chr4 143105947 143106030 -41182632 - MIR3 SINE MIR -124 84 3 439 277 31 0 chr4 143106773 143106903 -41181759 + MIR3 SINE MIR 34 167 -41 689 239 0 0 chr4 143106924 143107054 -41181608 - FLAM_A SINE Alu -3 130 1 390 338 101 10 chr4 143107130 143107337 -41181325 - MIR SINE MIR -5 257 32 203 176 0 0 chr4 143107917 143107951 -41180711 + MER5B DNA MER1_type 6 39 -139 909 221 50 95 chr4 143108457 143108705 -41179957 - MER58B DNA MER1_type -2079 341 112 2381 103 0 0 chr4 143108705 143109016 -41179646 - AluY SINE Alu 0 311 1 909 221 50 95 chr4 143109016 143109124 -41179538 - MER58B DNA MER1_type -2308 112 1 209 329 25 25 chr4 143109133 143109212 -41179450 + MER5B DNA MER1_type 88 166 -12 20498 40 1 0 chr4 143109278 143111941 -41176721 - L1PA3 LINE L1 -2574 3572 908 15384 32 1 0 chr4 143111941 143114559 -41174103 + L1PA3 LINE L1 3541 6155 0 1581 199 0 17 chr4 143114575 143114866 -41173796 + AluJo SINE Alu 6 291 -21 2111 101 3 7 chr4 143115488 143115774 -41172888 + AluSx SINE Alu 6 290 -22 396 337 91 0 chr4 143116648 143116835 -41171827 + MIR SINE MIR 2 205 -57 3800 193 40 42 chr4 143116836 143118394 -41170268 + L1MB5 LINE L1 4613 6174 0 342 169 0 14 chr4 143118394 143118465 -41170197 + MIR SINE MIR 193 262 0 226 171 92 0 chr4 143118776 143118852 -41169810 - L1ME4a LINE L1 -31 6090 6008 190 330 22 33 chr4 143119406 143119497 -41169165 - MIR3 SINE MIR -21 187 98 261 0 0 0 chr4 143119730 143119759 -41168903 + (A)n Simple_repeat Simple_repeat 1 29 0 345 247 23 17 chr4 143119899 143120073 -41168589 + CT-rich Low_complexity Low_complexity 3 177 0 223 222 123 74 chr4 143120075 143120156 -41168506 - L2 LINE L2 -6 3307 3223 439 315 49 31 chr4 143120364 143120650 -41168012 + L2 LINE L2 2894 3184 -129 243 88 0 0 chr4 143120927 143120961 -41167701 + (A)n Simple_repeat Simple_repeat 1 34 0 221 266 47 94 chr4 143121345 143121473 -41167189 - L3 LINE CR1 -258 1319 1198 27 49 0 0 chr4 143121611 143121652 -41167010 + AT_rich Low_complexity Low_complexity 1 41 0 455 323 58 35 chr4 143121700 143121926 -41166736 - MIR SINE MIR -26 236 6 1333 173 11 53 chr4 143122116 143122382 -41166280 - AluJo SINE Alu -57 255 1 330 364 51 21 chr4 143123839 143124075 -41164587 - MIR SINE MIR -14 248 6 238 228 53 181 chr4 143124483 143124654 -41164008 + MIR SINE MIR 114 262 0 873 73 0 0 chr4 143124836 143124945 -41163717 + AluY SINE Alu 194 302 -9 28 29 0 0 chr4 143125066 143125101 -41163561 + AT_rich Low_complexity Low_complexity 1 35 0 382 277 94 35 chr4 143125107 143125501 -41163161 - L1ME4a LINE L1 -11 6110 5694 282 211 92 35 chr4 143129116 143129258 -41159404 + L1ME4a LINE L1 5759 5908 -213 384 317 143 46 chr4 143129275 143129603 -41159059 + L2 LINE L2 2913 3272 0 190 330 22 33 chr4 143130016 143130107 -41158555 - MIR3 SINE MIR -21 187 98 218 317 195 0 chr4 143130172 143130254 -41158408 - L2 LINE L2 -22 3250 3153 254 253 0 45 chr4 143130491 143130669 -41157993 + CT-rich Low_complexity Low_complexity 3 172 0 229 173 136 86 chr4 143130671 143130752 -41157910 - L2 LINE L2 -6 3307 3223 428 307 52 38 chr4 143130961 143131248 -41157414 + L2 LINE L2 2894 3184 -129 246 62 0 0 chr4 143131526 143131558 -41157104 + (A)n Simple_repeat Simple_repeat 1 32 0 230 313 23 92 chr4 143131946 143132077 -41156585 - L3 LINE CR1 -258 1319 1198 27 29 0 0 chr4 143132219 143132253 -41156409 + AT_rich Low_complexity Low_complexity 1 34 0 397 358 49 26 chr4 143132301 143132527 -41156135 - MIR SINE MIR -26 236 6 25 83 0 0 chr4 143132818 143132878 -41155784 + AT_rich Low_complexity Low_complexity 1 60 0 26 64 0 0 chr4 143134756 143134803 -41153859 + AT_rich Low_complexity Low_complexity 1 47 0 308 204 92 35 chr4 143134985 143135127 -41153535 + L1ME4a LINE L1 5759 5908 -213 382 320 118 49 chr4 143135165 143135471 -41153191 + L2 LINE L2 2946 3272 0 23 0 0 0 chr4 143136726 143136749 -41151913 + AT_rich Low_complexity Low_complexity 1 23 0 218 56 28 0 chr4 143136819 143136855 -41151807 + (TTTTA)n Simple_repeat Simple_repeat 2 38 0 272 181 12 0 chr4 143140004 143140087 -41148575 + (CCG)n Simple_repeat Simple_repeat 2 85 0 297 269 56 76 chr4 143140307 143140556 -41148106 + Charlie8 DNA MER1_type 38 281 -2136 636 258 149 33 chr4 143140561 143140863 -41147799 - MLT1I LTR MaLR -14 395 59 466 335 101 68 chr4 143141281 143141618 -41147044 - L2 LINE L2 -8 3264 2917 180 176 0 0 chr4 143141872 143141906 -41146756 + (CATATA)n Simple_repeat Simple_repeat 1 34 0 2811 206 98 17 chr4 143141974 143142731 -41145931 + L1PBa LINE L1 6 823 -6040 7219 131 78 2 chr4 143142746 143143919 -41144743 + L1PBa LINE L1 1513 2817 -4045 223 26 0 53 chr4 143143919 143143957 -41144705 + (CAA)n Simple_repeat Simple_repeat 3 38 0 7219 131 78 2 chr4 143143957 143144217 -41144445 + L1PBa LINE L1 2817 3056 -3806 7496 34 0 0 chr4 143144230 143145500 -41143162 - L1PA4 LINE L1 -3 6152 4884 1256 166 37 12 chr4 143145501 143145742 -41142920 + MSTB LTR MaLR 180 426 0 24 32 0 0 chr4 143146347 143146378 -41142284 + AT_rich Low_complexity Low_complexity 1 31 0 268 291 85 53 chr4 143146679 143146961 -41141701 - L2 LINE L2 -1124 2190 1900 1126 294 159 2 chr4 143147328 143147864 -41140798 + L2 LINE L2 2693 3313 0 2480 65 3 21 chr4 143148430 143148766 -41139896 - L1PA7 LINE L1 0 6154 5825 212 191 24 0 chr4 143149843 143149885 -41138777 + (TG)n Simple_repeat Simple_repeat 2 44 0 266 257 148 30 chr4 143149973 143150074 -41138588 - MIR SINE MIR -77 185 73 3480 162 58 76 chr4 143150188 143150880 -41137782 - L1MB2 LINE L1 -7 6164 5462 1330 153 41 118 chr4 143150880 143151271 -41137391 + MLT1A1 LTR MaLR 1 361 -4 3480 162 58 76 chr4 143151271 143151326 -41137336 - L1MB2 LINE L1 -709 5462 5408 1724 121 0 8 chr4 143151326 143151575 -41137087 - AluSx SINE Alu -65 247 1 3480 162 58 76 chr4 143151575 143151792 -41136870 - L1MB2 LINE L1 -763 5408 5217 233 228 0 0 chr4 143152020 143152077 -41136585 + A-rich Low_complexity Low_complexity 1 57 0 1071 121 5 49 chr4 143152836 143153059 -41135603 + L1MA4 LINE L1 6087 6299 -1 1763 185 50 45 chr4 143153077 143153541 -41135121 - MLT1D LTR MaLR 0 505 40 397 239 77 0 chr4 143154893 143155010 -41133652 - MIR SINE MIR -114 148 23 310 83 100 17 chr4 143155389 143155449 -41133213 - L1MB2 LINE L1 -3 6168 6104 925 205 124 2 chr4 143155451 143155750 -41132912 - L1MB8 LINE L1 -170 6008 5668 1032 185 8 11 chr4 143155750 143156014 -41132648 + L1M3 LINE L1 5237 5499 -672 424 340 72 7 chr4 143156409 143156562 -41132100 - MER91A DNA MER1_type -1 195 33 1917 159 122 8 chr4 143156659 143157037 -41131625 - MSTA LTR MaLR 0 428 8 9157 148 18 21 chr4 143157044 143158626 -41130036 - MSTA-int LTR MaLR 0 1580 4 1591 149 232 11 chr4 143158631 143158980 -41129682 - MSTA LTR MaLR -2 426 1 7516 52 1 3 chr4 143160403 143162133 -41126529 + L1PA5 LINE L1 4420 6154 0 21 36 0 0 chr4 143162577 143162605 -41126057 + AT_rich Low_complexity Low_complexity 1 28 0 213 349 105 0 chr4 143162641 143162727 -41125935 - MIR3 SINE MIR -13 195 101 2822 3 0 0 chr4 143164109 143164414 -41124248 + AluYa5 SINE Alu 1 305 -6 488 278 92 17 chr4 143164487 143164660 -41124002 - MIR SINE MIR 0 262 77 1225 175 131 75 chr4 143165647 143166076 -41122586 + MSTB2 LTR MaLR 1 453 -4 1629 143 26 49 chr4 143166233 143166361 -41122301 - MER1B DNA MER1_type -2373 339 210 2432 84 0 0 chr4 143166361 143166669 -41121993 - AluY SINE Alu -3 308 1 1629 143 26 49 chr4 143166669 143166848 -41121814 - MER1B DNA MER1_type -2502 210 39 1768 243 28 24 chr4 143166872 143167415 -41121247 - L1ME3A LINE L1 -215 6766 6222 719 290 57 54 chr4 143167470 143167842 -41120820 - L1ME3A LINE L1 -854 6103 5727 1828 160 19 7 chr4 143167842 143168149 -41120513 - AluSx SINE Alu -1 311 1 719 290 57 54 chr4 143168149 143168479 -41120183 - L1ME3A LINE L1 -1230 5727 5399 659 276 96 15 chr4 143169175 143169653 -41119009 - L1ME3A LINE L1 -1632 5325 4809 1688 161 178 8 chr4 143169661 143170027 -41118635 + MSTA LTR MaLR 1 428 0 1568 271 108 20 chr4 143170358 143171530 -41117132 - L1ME3A LINE L1 -2133 4824 3551 332 272 64 68 chr4 143171562 143171827 -41116835 - L1ME3A LINE L1 -4258 2880 2617 218 104 0 62 chr4 143171837 143171885 -41116777 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 451 300 77 29 chr4 143171890 143172400 -41116262 - L1ME3A LINE L1 -4634 2504 1971 235 263 0 0 chr4 143172442 143172522 -41116140 - L1ME3A LINE L1 -5187 1672 1593 1518 132 9 0 chr4 143172632 143172860 -41115802 - AluSg/x SINE Alu 0 310 81 311 336 59 38 chr4 143172897 143173135 -41115527 + L1MEd LINE L1 620 862 -5257 275 196 0 0 chr4 143173258 143173304 -41115358 - MLT1C LTR MaLR 0 390 345 1788 191 27 16 chr4 143173306 143173678 -41114984 - MLT1C LTR MaLR -87 380 5 458 264 35 14 chr4 143174207 143174351 -41114311 + MIR SINE MIR 116 262 0 236 300 116 56 chr4 143174634 143174884 -41113778 - L2 LINE L2 -1870 1444 1180 197 136 0 23 chr4 143174892 143174936 -41113726 + (TTTTA)n Simple_repeat Simple_repeat 3 45 0 833 112 12 25 chr4 143176414 143176575 -41112087 + (TTTC)n Simple_repeat Simple_repeat 2 160 0 1455 165 12 104 chr4 143176578 143176906 -41111756 - AluJb SINE Alu -4 298 1 207 219 0 0 chr4 143177050 143177091 -41111571 - MIR SINE MIR -2 260 220 2049 134 23 3 chr4 143177738 143178043 -41110619 + AluSx SINE Alu 1 311 -1 2162 112 0 7 chr4 143178932 143179226 -41109436 + AluSq SINE Alu 1 292 -21 1912 129 57 48 chr4 143179627 143179999 -41108663 + THE1C LTR MaLR 1 375 0 9504 111 31 44 chr4 143179999 143181592 -41107070 + THE1C-int LTR MaLR 1 1573 -7 2119 124 50 14 chr4 143181599 143181961 -41106701 + THE1C LTR MaLR 1 375 0 29 47 0 0 chr4 143181992 143182035 -41106627 + AT_rich Low_complexity Low_complexity 1 43 0 181 340 0 20 chr4 143182161 143182211 -41106451 - L2 LINE L2 -64 3208 3160 1896 155 0 36 chr4 143184446 143184755 -41103907 - AluSx SINE Alu -14 298 1 214 375 174 0 chr4 143184755 143184990 -41103672 - L3 LINE CR1 -105 1472 1197 512 310 172 23 chr4 143185135 143185483 -41103179 - L2 LINE L2 -551 2763 2364 478 303 39 34 chr4 143185485 143185663 -41102999 - L3 LINE CR1 -1050 527 349 5732 161 28 8 chr4 143185865 143186332 -41102330 - L1MA5A LINE L1 -2 6937 6481 2211 135 0 0 chr4 143186332 143186636 -41102026 - AluSx SINE Alu -8 304 1 5732 161 28 8 chr4 143186636 143187993 -41100669 - L1MA5A LINE L1 -458 6481 5074 5113 224 32 8 chr4 143187994 143189096 -41099566 - L1MA5A LINE L1 -5654 1135 8 361 255 83 14 chr4 143189722 143189867 -41098795 - Charlie8 DNA MER1_type -2224 193 39 1567 196 11 0 chr4 143190697 143190967 -41097695 + AluJo SINE Alu 14 286 -26 210 71 0 0 chr4 143191140 143191168 -41097494 + (TTA)n Simple_repeat Simple_repeat 1 28 0 371 320 0 0 chr4 143191928 143192028 -41096634 + GA-rich Low_complexity Low_complexity 1 100 0 235 278 0 41 chr4 143192616 143192713 -41095949 - MLT1H-int LTR MaLR -1640 95 3 605 289 218 11 chr4 143192730 143193170 -41095492 - MLT1H LTR MaLR -16 533 3 706 301 74 55 chr4 143193256 143193635 -41095027 + LTR16C LTR ERVL 71 456 -35 2346 83 6 13 chr4 143193641 143193955 -41094707 - AluSp SINE Alu -1 312 1 2702 129 44 0 chr4 143194165 143194575 -41094087 - MSTC LTR MaLR 0 428 1 21 0 0 0 chr4 143194877 143194898 -41093764 + AT_rich Low_complexity Low_complexity 1 21 0 1502 210 21 0 chr4 143194903 143195194 -41093468 - AluJo SINE Alu -15 297 1 289 289 86 7 chr4 143195231 143195383 -41093279 - L1MDb LINE L1 -4736 2126 1674 235 270 40 29 chr4 143195404 143195578 -41093084 - L1MDb LINE L1 -4961 1462 1287 24 0 0 0 chr4 143196468 143196492 -41092170 + AT_rich Low_complexity Low_complexity 1 24 0 649 309 53 21 chr4 143196598 143196938 -41091724 + MLT1K LTR MaLR 145 495 -93 21 36 0 0 chr4 143196938 143196966 -41091696 + AT_rich Low_complexity Low_complexity 1 28 0 381 272 67 33 chr4 143197405 143197585 -41091077 - MIR SINE MIR -71 191 6 1580 158 27 21 chr4 143199613 143199948 -41088714 + L1MA7 LINE L1 5953 6289 -2 25 0 0 0 chr4 143199948 143199973 -41088689 + AT_rich Low_complexity Low_complexity 1 25 0 707 124 0 3 chr4 143200450 143200461 -41088201 - L1ME LINE L1 -495 5659 5649 4544 123 7 4 chr4 143200461 143201174 -41087488 - L1PB3 LINE L1 0 6154 5440 707 124 0 3 chr4 143201174 143201276 -41087386 - L1ME LINE L1 -505 5649 5558 2867 169 9 2 chr4 143201277 143201827 -41086835 - L1PB3 LINE L1 -1955 4191 3638 2151 104 51 88 chr4 143203039 143203471 -41085191 + MSTA LTR MaLR 1 416 -12 233 93 61 45 chr4 143203506 143203762 -41084900 + (TTAA)n Simple_repeat Simple_repeat 1 260 0 280 296 91 37 chr4 143204104 143204347 -41084315 + L2 LINE L2 2804 3059 -213 343 309 95 80 chr4 143204527 143204997 -41083665 - L2 LINE L2 -44 3228 2730 22 0 0 0 chr4 143205294 143205316 -41083346 + AT_rich Low_complexity Low_complexity 1 22 0 328 354 62 7 chr4 143206915 143207059 -41081603 - MIR3 SINE MIR -25 183 32 214 206 131 65 chr4 143208146 143208253 -41080409 - MIR3 SINE MIR -91 117 4 301 337 0 12 chr4 143208613 143208696 -41079966 - MIR3 SINE MIR -124 84 3 440 297 62 0 chr4 143209439 143209584 -41079078 + MIR3 SINE MIR 34 187 -21 652 254 0 0 chr4 143209590 143209720 -41078942 - FLAM_A SINE Alu -12 130 1 404 339 109 5 chr4 143209796 143209988 -41078674 - MIR SINE MIR -5 257 46 203 176 0 0 chr4 143210584 143210618 -41078044 + MER5B DNA MER1_type 6 39 -139 920 201 46 120 chr4 143211126 143211385 -41077277 - MER58B DNA MER1_type -2079 341 115 2495 80 0 0 chr4 143211385 143211696 -41076966 - AluY SINE Alu 0 311 1 920 201 46 120 chr4 143211696 143211804 -41076858 - MER58B DNA MER1_type -2305 115 1 238 380 0 0 chr4 143211813 143211892 -41076770 + MER5B DNA MER1_type 88 166 -12 322 251 36 84 chr4 143211903 143211970 -41076692 - MER112 DNA MER1_type -34 226 157 1637 192 0 17 chr4 143211970 143212261 -41076401 + AluJo SINE Alu 6 291 -21 322 251 36 84 chr4 143212261 143212360 -41076302 - MER112 DNA MER1_type -103 157 68 2005 109 7 7 chr4 143212887 143213172 -41075490 + AluSx SINE Alu 6 290 -22 396 337 91 0 chr4 143214046 143214233 -41074429 + MIR SINE MIR 2 205 -57 634 261 37 0 chr4 143214234 143214452 -41074210 + L1M4 LINE L1 4613 4838 -1308 317 272 52 76 chr4 143214613 143214863 -41073799 + Charlie8 DNA MER1_type 38 281 -2136 297 253 53 32 chr4 143214868 143214963 -41073699 - MLT1I LTR MaLR -14 395 299 185 161 0 0 chr4 143215589 143215620 -41073042 + L3 LINE CR1 266 296 -1281 * 505 321 110 68 chr4 143215593 143215929 -41072733 - L2 LINE L2 -8 3264 2915 321 346 81 7 chr4 143216182 143216318 -41072344 + MER91A DNA MER1_type 50 195 -1 923 186 30 20 chr4 143216713 143216974 -41071688 - L1M3 LINE L1 -684 5499 5237 849 246 146 8 chr4 143216979 143217304 -41071358 + L1MB8 LINE L1 5673 6006 -172 272 177 48 0 chr4 143217277 143217339 -41071323 + L1MB2 LINE L1 6104 6168 -3 * 381 248 77 0 chr4 143217717 143217834 -41070828 + MIR SINE MIR 23 148 -114 2739 210 96 17 chr4 143218859 143219617 -41069045 + L1PBa LINE L1 6 823 -6040 7143 135 76 3 chr4 143219632 143220806 -41067856 + L1PBa LINE L1 1513 2813 -4049 181 0 0 65 chr4 143220806 143220837 -41067825 + (CAA)n Simple_repeat Simple_repeat 3 31 0 7143 135 76 3 chr4 143220837 143221101 -41067561 + L1PBa LINE L1 2813 3056 -3806 7483 37 0 0 chr4 143221113 143222380 -41066282 - L1PA4 LINE L1 -3 6152 4886 1212 174 37 12 chr4 143222383 143222624 -41066038 + MSTB LTR MaLR 180 426 0 22 0 0 0 chr4 143223239 143223261 -41065401 + AT_rich Low_complexity Low_complexity 1 22 0 238 305 85 53 chr4 143223562 143223844 -41064818 - L2 LINE L2 -1124 2190 1900 204 40 0 0 chr4 143224656 143224681 -41063981 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 685 272 90 22 chr4 143225095 143225584 -41063078 - L1M4 LINE L1 -1627 4519 3998 1669 158 178 8 chr4 143225592 143225958 -41062704 + MSTA LTR MaLR 1 428 0 1538 271 108 22 chr4 143226293 143227466 -41061196 - L1M4 LINE L1 -2133 4013 2740 926 273 128 14 chr4 143227691 143228036 -41060626 + L2 LINE L2 2929 3312 -1 2483 73 3 3 chr4 143228606 143228934 -41059728 - L1PA7 LINE L1 -2 6152 5825 180 0 0 0 chr4 143230005 143230025 -41058637 + (TC)n Simple_repeat Simple_repeat 2 21 0 183 80 0 0 chr4 143230034 143230059 -41058603 + (TG)n Simple_repeat Simple_repeat 1 25 0 276 293 123 9 chr4 143230158 143230264 -41058398 - MIR SINE MIR -77 185 68 3278 165 62 1 chr4 143230372 143231019 -41057643 - L1MB2 LINE L1 -7 6164 5479 26 0 0 0 chr4 143231027 143231053 -41057609 + AT_rich Low_complexity Low_complexity 1 26 0 1330 153 41 118 chr4 143231064 143231455 -41057207 + MLT1A1 LTR MaLR 1 361 -4 234 0 0 0 chr4 143231481 143231507 -41057155 + (T)n Simple_repeat Simple_repeat 1 26 0 1415 176 0 12 chr4 143231510 143231760 -41056902 - AluSx SINE Alu -65 247 1 719 154 95 0 chr4 143231775 143231977 -41056685 - L1MB2 LINE L1 -743 5403 5217 233 228 0 0 chr4 143232205 143232262 -41056400 + A-rich Low_complexity Low_complexity 1 57 0 207 152 0 0 chr4 143433212 143433258 -40855404 + (TA)n Simple_repeat Simple_repeat 2 47 0 1907 186 8 11 chr4 143433462 143433828 -40854834 - MLT1A1 LTR MaLR 0 365 1 5680 45 0 0 chr4 143434165 143434891 -40853771 + L1P LINE L1 3031 3756 -2390 1032 249 68 9 chr4 143434926 143435247 -40853415 + L1M4 LINE L1 3489 3828 -2318 615 253 16 68 chr4 143435356 143435605 -40853057 + MLT2C1 LTR ERVL 162 397 0 288 276 0 0 chr4 143435608 143435684 -40852978 - L2 LINE L2 -998 2316 2241 1279 326 21 98 chr4 143436500 143437073 -40851589 - LTR26B LTR ERV1 -2 529 1 231 298 203 24 chr4 143437530 143437739 -40850923 + MIR SINE MIR 16 262 0 252 0 0 0 chr4 143438024 143438052 -40850610 + (T)n Simple_repeat Simple_repeat 1 28 0 332 286 34 0 chr4 143438578 143438697 -40849965 - HAL1 LINE L1 -857 1650 1528 1593 115 0 0 chr4 143438752 143438987 -40849675 - L1PB1 LINE L1 -8 6143 5909 873 226 25 17 chr4 143439087 143439322 -40849340 + L1M4 LINE L1 3941 4177 -1969 972 268 56 20 chr4 143439559 143439865 -40848797 + MLT1H LTR MaLR 13 329 -220 450 198 94 9 chr4 143439927 143440033 -40848629 + MLT1H LTR MaLR 433 547 -2 324 0 0 0 chr4 143440204 143440240 -40848422 + (TG)n Simple_repeat Simple_repeat 2 37 0 1922 93 12 0 chr4 143440309 143440566 -40848096 + AluSc SINE Alu 47 306 -3 312 314 23 0 chr4 143440879 143440965 -40847697 - L2 LINE L2 0 3272 3185 252 0 0 0 chr4 143441712 143441740 -40846922 + (T)n Simple_repeat Simple_repeat 1 28 0 22 80 0 0 chr4 143441871 143441921 -40846741 + AT_rich Low_complexity Low_complexity 1 50 0 1686 207 13 27 chr4 143443081 143443457 -40845205 + MLT1A2 LTR MaLR 4 374 0 36 23 0 0 chr4 143443614 143443657 -40845005 + AT_rich Low_complexity Low_complexity 1 43 0 21 57 0 0 chr4 143443823 143443858 -40844804 + AT_rich Low_complexity Low_complexity 1 35 0 1923 171 102 4 chr4 143443914 143444383 -40844279 + MER114 LTR ERV 21 535 -113 303 335 126 22 chr4 143447160 143447342 -40841320 + L3 LINE CR1 936 1136 -441 411 321 16 22 chr4 143447424 143447608 -40841054 + MER5A DNA MER1_type 7 189 0 185 171 0 98 chr4 143447718 143447759 -40840903 + L3 LINE CR1 1332 1368 -209 470 91 13 0 chr4 143447979 143448056 -40840606 + (TC)n Simple_repeat Simple_repeat 1 78 0 9623 222 39 110 chr4 143448294 143453021 -40835641 + L1P1 LINE L1 2829 7216 -377 1847 131 0 0 chr4 143453025 143453284 -40835378 + AluSg SINE Alu 1 259 -51 271 167 30 0 chr4 143453289 143453355 -40835307 + (TA)n Simple_repeat Simple_repeat 1 68 0 237 291 23 0 chr4 143453364 143453450 -40835212 - L1MC4 LINE L1 -1341 6701 6614 1866 78 0 8 chr4 143453855 143454097 -40834565 - AluY SINE Alu -14 297 58 12910 218 29 61 chr4 143454269 143457653 -40831009 + L1PA15 LINE L1 1 3491 -3325 969 49 16 0 chr4 143457653 143457773 -40830889 + L1PA7 LINE L1 6031 6154 0 12910 218 29 61 chr4 143457773 143459353 -40829309 + L1PA15 LINE L1 3491 5120 -1696 1645 186 6 43 chr4 143459353 143459675 -40828987 + AluSx SINE Alu 3 312 0 12910 218 29 61 chr4 143459675 143461180 -40827482 + L1PA15 LINE L1 5120 6816 0 751 295 20 12 chr4 143461239 143461483 -40827179 - MLT2F LTR ERVL -1 662 417 857 183 147 141 chr4 143461491 143461993 -40826669 + MLT1D LTR MaLR 1 505 0 1216 273 51 16 chr4 143462006 143462376 -40826286 - MLT2F LTR ERVL -280 383 1 381 343 0 0 chr4 143462378 143462524 -40826138 - HERVL LTR ERVL -4459 1026 881 186 267 33 33 chr4 143462626 143462686 -40825976 - MER5A DNA MER1_type -86 103 44 29 0 0 25 chr4 143463088 143463105 -40825557 + AT_rich Low_complexity Low_complexity 1 17 -22 2163 119 6 6 chr4 143463105 143463416 -40825246 - AluSp SINE Alu -2 311 1 29 0 0 25 chr4 143463416 143463438 -40825224 + AT_rich Low_complexity Low_complexity 17 39 0 1879 268 49 54 chr4 143463559 143464582 -40824080 - L1PBa LINE L1 -5840 1023 6 916 250 6 54 chr4 143464647 143464979 -40823683 - L1MEd LINE L1 -4906 1213 898 3687 106 61 31 chr4 143465086 143466047 -40822615 - MER11A LTR ERVK 0 1071 1 269 194 0 16 chr4 143466171 143466233 -40822429 + CT-rich Low_complexity Low_complexity 2 62 0 234 237 0 52 chr4 143466296 143466393 -40822269 + T-rich Low_complexity Low_complexity 2 93 0 232 402 0 0 chr4 143466567 143466669 -40821993 - L1MEd LINE L1 -5769 350 249 202 393 59 48 chr4 143467151 143467505 -40821157 - L2 LINE L2 -342 2972 2615 214 292 34 22 chr4 143467639 143467728 -40820934 - L2 LINE L2 -926 2388 2299 646 323 67 60 chr4 143467875 143468309 -40820353 - L2 LINE L2 -4 3309 2873 216 0 0 0 chr4 143468632 143468656 -40820006 + (TG)n Simple_repeat Simple_repeat 2 25 0 29 60 0 0 chr4 143468750 143468800 -40819862 + AT_rich Low_complexity Low_complexity 1 50 0 799 236 64 25 chr4 143469362 143469642 -40819020 - LTR50 LTR ERVL -24 771 481 459 296 33 20 chr4 143469753 143469905 -40818757 - HERVL LTR ERVL -2445 3209 3056 2511 163 12 5 chr4 143470141 143470558 -40818104 - MSTB LTR MaLR -6 420 1 281 244 26 0 chr4 143471081 143471159 -40817503 - MER116 DNA Mariner 0 80 1 6904 56 14 2 chr4 143471233 143472240 -40816422 + L1PA7 LINE L1 5132 6152 -2 1320 220 50 8 chr4 143472965 143473324 -40815338 - MER114 LTR ERV -3 645 272 362 216 45 0 chr4 143473381 143473469 -40815193 - MER114 LTR ERV -479 169 78 256 318 0 0 chr4 143473469 143473532 -40815130 + (TG)n Simple_repeat Simple_repeat 2 64 0 242 264 0 0 chr4 143473979 143474032 -40814630 - MER94 DNA DNA -81 53 1 242 359 15 23 chr4 143474053 143474184 -40814478 + L3 LINE CR1 1407 1536 -41 234 195 0 0 chr4 143474281 143474368 -40814294 + (TTA)n Simple_repeat Simple_repeat 1 87 0 780 159 24 6 chr4 143474391 143474561 -40814101 + GA-rich Low_complexity Low_complexity 3 175 0 563 296 56 24 chr4 143475098 143475348 -40813314 + MIR SINE MIR 5 262 0 213 196 0 0 chr4 143475354 143475410 -40813252 + (TTA)n Simple_repeat Simple_repeat 1 56 0 284 301 48 0 chr4 143475474 143475557 -40813105 - L2 LINE L2 0 3313 3227 265 425 37 15 chr4 143476185 143476319 -40812343 + L2 LINE L2 3133 3269 -3 195 42 0 0 chr4 143476321 143476345 -40812317 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr4 143477383 143477404 -40811258 + AT_rich Low_complexity Low_complexity 1 21 0 194 336 71 26 chr4 143477493 143477606 -40811056 - MIR SINE MIR -58 150 33 21 89 0 0 chr4 143477903 143477959 -40810703 + AT_rich Low_complexity Low_complexity 1 56 0 2005 137 3 0 chr4 143477972 143478264 -40810398 - AluSx SINE Alu -17 295 3 302 272 224 14 chr4 143478437 143478584 -40810078 + MIR SINE MIR 64 241 -21 256 261 75 55 chr4 143478708 143478961 -40809701 + L1ME4a LINE L1 5710 5967 -154 21 36 0 0 chr4 143479008 143479036 -40809626 + AT_rich Low_complexity Low_complexity 1 28 0 34 79 0 0 chr4 143479150 143479226 -40809436 + AT_rich Low_complexity Low_complexity 1 76 0 506 93 0 0 chr4 143480129 143480204 -40808458 + L1MB4 LINE L1 6105 6179 -1 1385 181 100 16 chr4 143480598 143480908 -40807754 + MER39 LTR ERV1 372 707 0 752 262 58 47 chr4 143480950 143481055 -40807607 + L2 LINE L2 2308 2410 -904 4127 102 38 16 chr4 143481055 143481685 -40806977 - LTR9B LTR ERV1 0 644 1 752 262 58 47 chr4 143481685 143481759 -40806903 + L2 LINE L2 2410 2482 -832 2080 218 78 8 chr4 143481759 143482231 -40806431 + MLT1D LTR MaLR 1 505 0 752 262 58 47 chr4 143482231 143482393 -40806269 + L2 LINE L2 2482 2654 -660 957 299 106 20 chr4 143482598 143483174 -40805488 + L2 LINE L2 2679 3312 -1 867 265 87 0 chr4 143483186 143483439 -40805223 - LTR16C LTR ERVL 0 491 217 186 255 64 0 chr4 143484455 143484502 -40804160 + L2 LINE L2 1 50 -3264 525 244 61 0 chr4 143485162 143485293 -40803369 - MIR3 SINE MIR -3 205 67 1742 191 64 16 chr4 143485950 143486326 -40802336 - MSTD LTR MaLR -2 394 1 27 0 0 0 chr4 143486626 143486653 -40802009 + AT_rich Low_complexity Low_complexity 1 27 0 221 180 20 0 chr4 143486852 143486902 -40801760 + (CAGT)n Simple_repeat Simple_repeat 4 54 0 617 265 0 13 chr4 143487031 143487182 -40801480 - MIR SINE MIR 0 262 114 34 42 0 0 chr4 143487498 143487546 -40801116 + AT_rich Low_complexity Low_complexity 1 48 0 252 0 0 0 chr4 143488740 143488768 -40799894 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 22 0 0 0 chr4 143489667 143489689 -40798973 + AT_rich Low_complexity Low_complexity 1 22 0 510 211 40 20 chr4 143489723 143489875 -40798787 + L1M4 LINE L1 4618 4772 -1374 540 264 179 9 chr4 143490097 143490309 -40798353 + MIR SINE MIR 5 252 -10 394 326 37 32 chr4 143491329 143491516 -40797146 + MIR3 SINE MIR 12 199 -9 1836 211 8 6 chr4 143491639 143492000 -40796662 + MLT1A1 LTR MaLR 4 365 0 34 0 0 0 chr4 143492598 143492632 -40796030 + AT_rich Low_complexity Low_complexity 1 34 0 615 286 56 24 chr4 143492795 143493008 -40795654 - MIR SINE MIR -14 248 29 263 349 36 0 chr4 143495800 143495883 -40792779 - L2 LINE L2 -2 3311 3226 1367 186 4 0 chr4 143496304 143496557 -40792105 - L1MD3 LINE L1 -12 7983 7730 234 330 12 20 chr4 143496890 143497000 -40791662 - MIR SINE MIR -65 143 50 2066 117 0 23 chr4 143500637 143500937 -40787725 - AluSx SINE Alu -19 293 1 216 0 0 0 chr4 143501089 143501113 -40787549 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 491 227 37 4 chr4 143501120 143501236 -40787426 + MIR SINE MIR 46 160 -63 199 434 56 21 chr4 143501239 143501382 -40787280 - L2 LINE L2 -36 3236 3089 234 341 34 0 chr4 143503111 143503199 -40785463 + L2 LINE L2 3223 3313 0 205 334 51 67 chr4 143503219 143503529 -40785133 - L2 LINE L2 -2401 913 608 1916 162 3 13 chr4 143503529 143503844 -40784818 + AluJb SINE Alu 1 312 0 205 334 51 67 chr4 143503844 143503889 -40784773 - L2 LINE L2 -2706 608 564 572 266 85 16 chr4 143504137 143504325 -40784337 + L2 LINE L2 3113 3313 0 779 209 45 0 chr4 143505215 143505392 -40783270 + MER53 DNA DNA 5 189 0 282 358 23 36 chr4 143506153 143506346 -40782316 + MIR SINE MIR 34 223 -39 220 148 59 20 chr4 143506870 143506971 -40781691 + (TA)n Simple_repeat Simple_repeat 2 106 0 341 293 63 91 chr4 143508479 143508797 -40779865 + MLT1J LTR MaLR 160 468 -43 740 40 10 0 chr4 143509078 143509178 -40779484 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 249 221 29 15 chr4 143509180 143509248 -40779414 + (TA)n Simple_repeat Simple_repeat 1 69 0 32 75 0 0 chr4 143509698 143509765 -40778897 + AT_rich Low_complexity Low_complexity 1 67 0 980 182 65 13 chr4 143509943 143510174 -40778488 + L1MB8 LINE L1 5936 6178 0 336 85 0 0 chr4 143512468 143512515 -40776147 - MADE1 DNA Mariner -32 48 2 2273 107 3 0 chr4 143513552 143513851 -40774811 + AluSq SINE Alu 7 306 -7 31 26 0 0 chr4 143514299 143514337 -40774325 + AT_rich Low_complexity Low_complexity 1 38 0 1374 138 8 49 chr4 143514610 143514856 -40773806 - AluJb SINE Alu -9 303 68 22 0 0 0 chr4 143519556 143519578 -40769084 + AT_rich Low_complexity Low_complexity 1 22 0 242 194 0 32 chr4 143522247 143522309 -40766353 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 35 63 0 0 chr4 143522856 143522919 -40765743 + AT_rich Low_complexity Low_complexity 1 63 0 33 56 0 0 chr4 143523927 143523981 -40764681 + AT_rich Low_complexity Low_complexity 1 54 0 260 397 0 0 chr4 143525478 143525551 -40763111 - L2 LINE L2 -44 3269 3197 195 186 0 0 chr4 143525592 143525635 -40763027 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2170 118 68 17 chr4 143525669 143526024 -40762638 - THE1C LTR MaLR 0 375 3 9972 123 30 18 chr4 143526026 143527584 -40761078 - THE1C-int LTR MaLR 0 1580 4 2274 113 18 12 chr4 143527584 143527921 -40760741 - THE1C LTR MaLR -36 339 1 364 83 0 0 chr4 143527962 143528010 -40760652 + MLT2B1 LTR ERVL 6 53 -462 1547 165 4 0 chr4 143528012 143528267 -40760395 - Tigger3(Golem) DNA MER2_type -3 3026 2771 882 179 0 21 chr4 143528263 143528408 -40760254 - Tigger3(Golem) DNA MER2_type -2886 143 2 * 1154 206 99 109 chr4 143528408 143528798 -40759864 + MLT2B1 LTR ERVL 51 437 -83 784 179 26 184 chr4 143528798 143529227 -40759435 - MLT1A1 LTR MaLR -3 362 2 1154 206 99 109 chr4 143529227 143529311 -40759351 + MLT2B1 LTR ERVL 437 520 0 24 0 0 0 chr4 143529353 143529377 -40759285 + AT_rich Low_complexity Low_complexity 1 24 0 22 80 0 0 chr4 143529530 143529580 -40759082 + AT_rich Low_complexity Low_complexity 1 50 0 870 333 127 5 chr4 143529650 143530263 -40758399 - L2 LINE L2 -733 2581 1894 2107 253 85 49 chr4 143530568 143532781 -40755881 + L1MEc LINE L1 8 2310 -3907 23470 45 11 2 chr4 143532781 143535763 -40752899 + L1P LINE L1 2 2997 -3149 2172 213 55 73 chr4 143537418 143537637 -40751025 + MLT1E1 LTR MaLR 32 253 -401 2577 121 57 0 chr4 143537637 143538041 -40750621 - MSTA LTR MaLR -1 427 1 2172 213 55 73 chr4 143538041 143538455 -40750207 + MLT1E1 LTR MaLR 253 654 0 266 291 139 0 chr4 143538604 143538690 -40749972 - MIR3 SINE MIR -34 174 77 624 156 26 104 chr4 143540438 143540630 -40748032 - MER53 DNA DNA -12 177 1 2164 62 10 14 chr4 143540640 143540930 -40747732 - L1PA10 LINE L1 -3 6165 5877 3163 181 28 31 chr4 143541205 143541354 -40747308 - L1MA9 LINE L1 -10 6302 6154 387 0 0 0 chr4 143541354 143541397 -40747265 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 3163 181 28 31 chr4 143541397 143541953 -40746709 - L1MA9 LINE L1 -158 6154 5599 715 295 174 70 chr4 143542219 143543055 -40745607 - L2 LINE L2 -92 3221 2273 290 301 72 0 chr4 143543367 143543450 -40745212 + L2 LINE L2 3225 3313 0 342 277 92 14 chr4 143545122 143545263 -40743399 + L2 LINE L2 3161 3312 -1 394 330 107 69 chr4 143545629 143545920 -40742742 - L2 LINE L2 -1 3271 2970 734 199 32 65 chr4 143546112 143546243 -40742419 - MER3 DNA MER1_type 0 209 86 1937 129 3 10 chr4 143546243 143546546 -40742116 + AluSx SINE Alu 1 301 -11 734 199 32 65 chr4 143546546 143546630 -40742032 - MER3 DNA MER1_type -123 86 1 401 290 127 44 chr4 143546752 143547004 -40741658 - L2 LINE L2 -103 3210 2938 2417 75 3 0 chr4 143547102 143547397 -40741265 - AluSp SINE Alu -17 296 1 1752 162 21 49 chr4 143547433 143547761 -40740901 - MLT2C1 LTR ERVL -78 319 1 618 278 63 96 chr4 143548864 143549168 -40739494 - L1MEd LINE L1 -2236 3893 3580 2452 67 0 3 chr4 143549168 143549480 -40739182 - AluY SINE Alu 0 311 1 618 278 63 96 chr4 143549480 143549983 -40738679 - L1MEd LINE L1 -2549 3580 2864 1431 212 29 33 chr4 143549998 143550507 -40738155 + L1MA9 LINE L1 5612 6276 -36 402 309 101 59 chr4 143550536 143551183 -40737479 - L1MEd LINE L1 -3282 2847 2174 332 282 118 12 chr4 143551606 143551776 -40736886 - HAL1b LINE L1 -437 911 724 608 297 56 43 chr4 143551806 143552345 -40736317 - HAL1b LINE L1 -731 617 26 918 307 73 49 chr4 143552669 143553466 -40735196 - L1MEd LINE L1 -5015 1104 289 309 320 147 6 chr4 143553763 143553919 -40734743 - MIR SINE MIR -10 252 75 1844 105 4 4 chr4 143554433 143554710 -40733952 + L1M1 LINE L1 5412 5688 -615 279 139 0 0 chr4 143554710 143554753 -40733909 - MSTA LTR MaLR 0 428 386 15806 133 14 104 chr4 143554762 143558214 -40730448 + L1P LINE L1 12 3151 -2995 30785 135 21 38 chr4 143558314 143563986 -40724676 - L1P3 LINE L1 -572 5582 13 652 253 84 43 chr4 143564022 143564414 -40724248 - HAL1 LINE L1 -191 2316 1909 700 306 8 11 chr4 143564740 143565005 -40723657 + L1 LINE L1 3640 3903 -2243 187 102 20 20 chr4 143565389 143565438 -40723224 + (TA)n Simple_repeat Simple_repeat 1 49 0 6031 187 14 20 chr4 143566247 143567573 -40721089 - L1P LINE L1 -3864 2282 965 416 314 15 0 chr4 143568423 143568560 -40720102 + MIR SINE MIR 70 208 -54 21 0 0 0 chr4 143568943 143568964 -40719698 + AT_rich Low_complexity Low_complexity 1 21 0 429 229 0 0 chr4 143568964 143569069 -40719593 - L1PA5 LINE L1 -11 6143 6039 5770 179 14 32 chr4 143569169 143570308 -40718354 + L1P LINE L1 192 1309 -4837 218 125 25 0 chr4 143572022 143572062 -40716600 + (TA)n Simple_repeat Simple_repeat 1 41 0 301 242 0 71 chr4 143572062 143572161 -40716501 + L1MC4 LINE L1 6612 6703 -1339 378 86 37 0 chr4 143572164 143572245 -40716417 + (TA)n Simple_repeat Simple_repeat 2 85 0 1798 159 107 8 chr4 143572251 143572616 -40716046 - MSTA LTR MaLR -27 401 1 8710 151 18 31 chr4 143572616 143574215 -40714447 - MSTA-int LTR MaLR 0 1580 3 2005 142 129 8 chr4 143574219 143574599 -40714063 - MSTA LTR MaLR -2 426 1 2812 186 22 7 chr4 143574600 143575203 -40713459 + L1MA4A LINE L1 5685 6296 -7 507 304 118 50 chr4 143575639 143576264 -40712398 - L1M4 LINE L1 -743 5403 4736 239 167 50 33 chr4 143576535 143576595 -40712067 - MER103 DNA DNA -19 147 87 2776 96 0 0 chr4 143576595 143576969 -40711693 + L1PA7 LINE L1 5773 6146 -8 21 0 0 0 chr4 143577191 143577212 -40711450 + AT_rich Low_complexity Low_complexity 1 21 0 13910 143 19 17 chr4 143577228 143579154 -40709508 - Tigger1 DNA MER2_type 0 2418 487 2103 138 0 0 chr4 143579154 143579450 -40709212 - AluSc SINE Alu -13 296 1 13910 143 19 17 chr4 143579450 143579935 -40708727 - Tigger1 DNA MER2_type -1931 487 4 361 370 87 0 chr4 143581266 143581450 -40707212 + MIR SINE MIR 53 252 -10 243 196 59 0 chr4 143585023 143585074 -40703588 + L2 LINE L2 3210 3263 -9 222 37 0 0 chr4 143589147 143589174 -40699488 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 818 183 0 6 chr4 143589358 143589538 -40699124 + GA-rich Low_complexity Low_complexity 1 179 0 348 284 92 52 chr4 143590330 143590580 -40698082 + L1M4 LINE L1 4060 4319 -1827 21 36 0 0 chr4 143590617 143590645 -40698017 + AT_rich Low_complexity Low_complexity 1 28 0 221 271 68 0 chr4 143591104 143591163 -40697499 - L2 LINE L2 -59 3213 3151 300 120 20 0 chr4 143592801 143592851 -40695811 + MER63 DNA MER1_type 3 53 -383 210 266 62 86 chr4 143593777 143593905 -40694757 - MIR SINE MIR -65 143 19 3677 240 35 35 chr4 143596447 143598349 -40690313 + L1MDb LINE L1 9 2027 -4379 1355 191 4 32 chr4 143598349 143598601 -40690061 + AluJb SINE Alu 46 290 -22 1400 215 61 17 chr4 143598616 143599279 -40689383 + L1MDb LINE L1 2072 2767 -3639 396 274 107 38 chr4 143600098 143600313 -40688349 - L1ME2 LINE L1 -216 5948 5749 2391 116 8 6 chr4 143600313 143600667 -40687995 - THE1A LTR MaLR 0 355 1 396 274 107 38 chr4 143600667 143600886 -40687776 - L1ME2 LINE L1 -415 5749 5488 290 303 76 47 chr4 143601208 143601332 -40687330 - L1MEd LINE L1 -5892 227 93 198 0 0 0 chr4 143601332 143601354 -40687308 + (TTG)n Simple_repeat Simple_repeat 2 23 0 290 303 76 47 chr4 143601354 143601440 -40687222 - L1MEd LINE L1 -6026 93 11 23 0 0 0 chr4 143601508 143601531 -40687131 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr4 143601928 143601959 -40686703 + AT_rich Low_complexity Low_complexity 1 31 0 198 333 122 0 chr4 143602650 143602740 -40685922 - L2 LINE L2 -5 3308 3208 7347 236 89 41 chr4 143602770 143606396 -40682266 + L1ME1 LINE L1 2215 6163 -3 639 229 72 99 chr4 143606426 143606758 -40681904 + HAL1 LINE L1 1175 1497 -1010 9006 198 68 13 chr4 143606795 143609595 -40679067 - L1MA8 LINE L1 -25 6266 3303 6201 158 8 22 chr4 143609593 143611654 -40677008 + L1MA4 LINE L1 4261 6291 -9 * 2971 211 16 32 chr4 143611668 143612376 -40676286 - L1 LINE L1 -1812 4334 3639 1472 233 170 26 chr4 143612378 143613107 -40675555 + HAL1 LINE L1 1503 2336 -171 37187 88 13 7 chr4 143613120 143619223 -40669439 + L1PA6 LINE L1 13 6154 0 221 83 28 0 chr4 143619230 143619266 -40669396 + (TAAAA)n Simple_repeat Simple_repeat 5 41 0 256 292 100 15 chr4 143619283 143619413 -40669249 + HAL1 LINE L1 2367 2507 0 632 276 117 0 chr4 143619597 143619793 -40668869 - MIR SINE MIR -21 241 23 280 322 72 5 chr4 143620537 143620786 -40667876 - L1MC4a LINE L1 -344 5834 5632 722 276 118 33 chr4 143620787 143621166 -40667496 + L2 LINE L2 2697 3103 -210 30 0 0 0 chr4 143621466 143621496 -40667166 + AT_rich Low_complexity Low_complexity 1 30 0 219 69 0 0 chr4 143622595 143622624 -40666038 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1998 146 10 0 chr4 143622626 143622920 -40665742 - AluSx SINE Alu -15 297 1 306 328 0 24 chr4 143622937 143623062 -40665600 + L1M4 LINE L1 5273 5394 -752 284 277 41 124 chr4 143625406 143625659 -40663003 + MIR SINE MIR 3 231 -31 200 355 0 65 chr4 143626697 143626804 -40661858 + MIR SINE MIR 26 125 -83 261 302 53 142 chr4 143627151 143627376 -40661286 + L2 LINE L2 3034 3238 -34 246 32 0 0 chr4 143627602 143627633 -40661029 + (CA)n Simple_repeat Simple_repeat 2 32 0 14359 130 32 11 chr4 143630088 143631229 -40657433 + Tigger1 DNA MER2_type 1 1117 -1301 1855 143 3 10 chr4 143631229 143631364 -40657298 + AluSp SINE Alu 1 135 -178 2163 103 4 0 chr4 143631364 143631690 -40656972 + AluY SINE Alu 1 327 0 1855 143 3 10 chr4 143631690 143631867 -40656795 + AluSp SINE Alu 135 312 -1 14359 130 32 11 chr4 143631867 143633095 -40655567 + Tigger1 DNA MER2_type 1117 2418 0 326 296 56 0 chr4 143633817 143633942 -40654720 + MER58C DNA MER1_type 1 132 -83 255 203 0 0 chr4 143633948 143634007 -40654655 + GA-rich Low_complexity Low_complexity 1 59 0 291 156 203 0 chr4 143634025 143634089 -40654573 + MER58C DNA MER1_type 139 215 0 769 272 40 59 chr4 143634290 143634613 -40654049 + MLT1L LTR MaLR 69 385 -230 2169 113 0 3 chr4 143634971 143635273 -40653389 - AluSx SINE Alu -11 301 1 535 268 147 36 chr4 143636325 143636631 -40652031 - L2 LINE L2 -1 3312 2973 1151 231 60 42 chr4 143637177 143637631 -40651031 + MLT1C LTR MaLR 6 467 0 24 0 0 0 chr4 143638855 143638879 -40649783 + AT_rich Low_complexity Low_complexity 1 24 0 200 222 0 0 chr4 143640560 143640596 -40648066 + (CA)n Simple_repeat Simple_repeat 2 37 0 228 293 69 26 chr4 143641509 143641625 -40647037 - MER117 DNA MER1_type -76 121 1 316 296 93 19 chr4 143641627 143641735 -40646927 + L2 LINE L2 3150 3265 -7 21 0 0 0 chr4 143641861 143641882 -40646780 + AT_rich Low_complexity Low_complexity 1 21 0 2073 125 6 32 chr4 143643566 143643878 -40644784 + AluSx SINE Alu 1 304 -8 265 356 10 29 chr4 143646005 143646109 -40642553 + L2 LINE L2 3170 3271 -1 356 206 57 40 chr4 143647863 143648047 -40640615 + L1ME4a LINE L1 5483 5684 -437 315 71 0 0 chr4 143648134 143648176 -40640486 + (TG)n Simple_repeat Simple_repeat 2 43 0 253 214 134 45 chr4 143648266 143648467 -40640195 + L1ME4a LINE L1 5903 6121 0 296 338 11 29 chr4 143648606 143648780 -40639882 + MIR SINE MIR 45 212 -50 559 262 47 61 chr4 143651358 143651642 -40637020 + L1MC4a LINE L1 5299 5575 -595 412 284 77 15 chr4 143652495 143652774 -40635888 + L1MC4a LINE L1 5577 5787 -334 223 244 0 0 chr4 143653886 143653931 -40634731 - L2 LINE L2 -5 3267 3223 * 835 223 112 4 chr4 143653928 143654163 -40634499 - MIR SINE MIR -3 259 10 22736 38 1 0 chr4 143654175 143657102 -40631560 - L1P LINE L1 -1161 4985 2056 1906 81 0 4 chr4 143657101 143657374 -40631288 - L1P LINE L1 -4821 1325 1054 * 7293 39 6 0 chr4 143657374 143658574 -40630088 + L1PA4 LINE L1 4946 6150 -5 182 242 136 30 chr4 143658692 143658758 -40629904 + MIR SINE MIR 73 145 -63 22 0 0 0 chr4 143658856 143658878 -40629784 + AT_rich Low_complexity Low_complexity 1 22 0 493 179 132 28 chr4 143659981 143660087 -40628575 + AluJo SINE Alu 18 134 -178 25 0 0 0 chr4 143660094 143660119 -40628543 + AT_rich Low_complexity Low_complexity 1 25 0 212 194 0 0 chr4 143660374 143660410 -40628252 + A-rich Low_complexity Low_complexity 1 36 0 2374 159 26 7 chr4 143662590 143663025 -40625637 + MSTB1 LTR MaLR 1 432 0 1727 184 10 10 chr4 143663330 143663640 -40625022 + AluJb SINE Alu 1 310 -2 183 309 147 73 chr4 143663792 143663928 -40624734 + L2 LINE L2 3127 3272 0 1777 177 0 35 chr4 143664197 143664513 -40624149 + AluSx SINE Alu 2 306 -6 284 309 53 106 chr4 143664513 143664694 -40623968 + MIR SINE MIR 9 145 -63 1444 230 55 93 chr4 143664884 143665520 -40623142 + LTR9 LTR ERV1 1 612 0 447 113 0 0 chr4 143665537 143665608 -40623054 + (TG)n Simple_repeat Simple_repeat 2 72 0 464 156 52 10 chr4 143666166 143666262 -40622400 - MER63 DNA MER1_type -333 729 4 331 325 71 19 chr4 143666921 143667075 -40621587 + MIR SINE MIR 62 223 -39 225 132 0 0 chr4 143669545 143669583 -40619079 + (CCA)n Simple_repeat Simple_repeat 2 39 0 316 319 58 38 chr4 143669732 143669950 -40618712 + MIR SINE MIR 30 249 -13 1968 141 17 3 chr4 143670416 143670713 -40617949 + AluSx SINE Alu 1 301 -11 497 114 13 0 chr4 143671164 143671243 -40617419 + MADE1 DNA Mariner 1 80 0 26 64 0 0 chr4 143671247 143671294 -40617368 + AT_rich Low_complexity Low_complexity 1 47 0 495 260 68 76 chr4 143672124 143672790 -40615872 + L1MEc LINE L1 790 1451 -4945 2296 102 3 0 chr4 143672790 143673085 -40615577 + AluSq SINE Alu 1 296 -17 495 260 68 76 chr4 143673085 143673183 -40615479 + L1MEc LINE L1 1451 1548 -4848 7055 51 26 10 chr4 143673201 143674084 -40614578 + MER11D LTR ERVK 1 897 0 576 209 53 21 chr4 143674180 143674388 -40614274 - MSTC LTR MaLR -194 202 1 473 325 16 53 chr4 143674398 143674895 -40613767 + L1MEc LINE L1 1914 2346 -3869 2022 128 3 26 chr4 143674895 143675199 -40613463 - AluSx SINE Alu -15 297 1 473 325 16 53 chr4 143675199 143675428 -40613234 + L1MEc LINE L1 2346 2582 -3633 183 270 48 48 chr4 143675945 143676008 -40612654 - MER5C DNA MER1_type -238 86 24 200 230 322 0 chr4 143676193 143676280 -40612382 - L2 LINE L2 0 3313 3199 382 300 40 40 chr4 143677020 143677513 -40611149 - L1MCc LINE L1 -5857 566 30 1006 135 90 40 chr4 143677611 143677697 -40610965 + MER2 DNA MER2_type 1 81 -264 771 207 121 59 chr4 143677697 143678020 -40610642 - MER2 DNA MER2_type 0 344 2 1006 135 90 40 chr4 143678020 143678133 -40610529 + MER2 DNA MER2_type 81 210 -135 35 24 0 0 chr4 143678158 143678200 -40610462 + AT_rich Low_complexity Low_complexity 1 42 0 183 265 20 0 chr4 143679363 143679412 -40609250 + MER5C DNA MER1_type 7 56 -268 294 231 15 0 chr4 143679662 143679727 -40608935 + MER91 DNA MER1_type 1 66 -74 501 278 62 0 chr4 143679777 143679939 -40608723 + MIR SINE MIR 31 206 -56 2292 119 3 0 chr4 143679968 143680279 -40608383 - AluSx SINE Alu 0 312 1 1843 212 91 77 chr4 143680299 143680641 -40608021 + MLT1E2 LTR MaLR 1 356 -270 1515 113 31 0 chr4 143680641 143680863 -40607799 + MER30 DNA MER1_type 2 230 0 1843 212 91 77 chr4 143680863 143681128 -40607534 + MLT1E2 LTR MaLR 356 616 -10 407 305 15 46 chr4 143681174 143681305 -40607357 - L2 LINE L2 0 3313 3187 1487 196 38 35 chr4 143681375 143681717 -40606945 - MER2 DNA MER2_type 0 344 2 7638 86 6 21 chr4 143681739 143682826 -40605836 - MER11C LTR ERVK 0 1071 1 226 306 102 10 chr4 143683270 143683368 -40605294 - MIR SINE MIR -43 219 113 439 267 43 16 chr4 143684253 143684440 -40604222 + L1ME4a LINE L1 5739 5930 -191 299 284 66 51 chr4 143684488 143684685 -40603977 - MLT1K LTR MaLR -22 566 367 194 139 47 0 chr4 143685017 143685060 -40603602 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 203 0 0 36 chr4 143685100 143685128 -40603534 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 2219 79 0 0 chr4 143685133 143685412 -40603250 - AluY SINE Alu -32 279 1 28 0 0 0 chr4 143685635 143685663 -40602999 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 143685798 143685819 -40602843 + AT_rich Low_complexity Low_complexity 1 21 0 261 300 0 0 chr4 143686493 143686553 -40602109 - Charlie8 DNA MER1_type -2355 62 3 324 0 0 0 chr4 143686684 143686720 -40601942 + (TG)n Simple_repeat Simple_repeat 2 37 0 273 209 30 0 chr4 143687122 143687189 -40601473 - LTR33A LTR ERVL -1 522 454 261 300 0 0 chr4 143687543 143687603 -40601059 - Charlie8 DNA MER1_type -2355 62 3 324 0 0 0 chr4 143687734 143687770 -40600892 + (TG)n Simple_repeat Simple_repeat 2 37 0 345 297 178 11 chr4 143688172 143688448 -40600214 - LTR50 LTR ERVL -1 794 473 373 173 202 0 chr4 143688589 143688693 -40599969 - LTR50 LTR ERVL -670 125 1 418 247 110 39 chr4 143688700 143688882 -40599780 + MER112 DNA MER1_type 31 225 -35 234 0 0 0 chr4 143689456 143689482 -40599180 + (TA)n Simple_repeat Simple_repeat 2 27 0 303 192 0 0 chr4 143689703 143689755 -40598907 + Alu SINE Alu 1 52 -256 201 319 110 0 chr4 143690503 143690594 -40598068 + MIR SINE MIR 89 189 -73 193 333 42 0 chr4 143690735 143690807 -40597855 + MIR SINE MIR 36 110 -152 751 269 36 40 chr4 143691022 143691275 -40597387 + MIR SINE MIR 11 262 0 1165 267 35 49 chr4 143691559 143692050 -40596612 + L1ME3A LINE L1 5427 5910 -260 2358 122 18 5 chr4 143692068 143692453 -40596209 - Tigger2 DNA MER2_type -56 2662 2273 440 129 0 0 chr4 143692452 143692514 -40596148 + MER8 DNA MER2_type 178 239 0 * 249 163 0 0 chr4 143692516 143692565 -40596097 + L1ME3A LINE L1 5907 5955 -215 458 314 91 0 chr4 143692618 143692739 -40595923 + L2 LINE L2 3125 3256 -16 1579 199 16 13 chr4 143692972 143693283 -40595379 - AluJb SINE Alu 0 312 1 1846 204 8 3 chr4 143695110 143695472 -40593190 - MLT1A1 LTR MaLR -1 364 1 23 54 0 0 chr4 143698172 143698209 -40590453 + AT_rich Low_complexity Low_complexity 1 37 0 1691 198 14 25 chr4 143698861 143699183 -40589479 + MLT1A1 LTR MaLR 1 320 -45 2788 85 3 3 chr4 143699183 143699547 -40589115 + THE1B LTR MaLR 1 364 0 1691 198 14 25 chr4 143699547 143699587 -40589075 + MLT1A1 LTR MaLR 320 359 -6 296 307 191 11 chr4 143700447 143700636 -40588026 + L2 LINE L2 2621 2843 -471 22 56 0 0 chr4 143700814 143700850 -40587812 + AT_rich Low_complexity Low_complexity 1 36 0 29 0 0 0 chr4 143701144 143701173 -40587489 + AT_rich Low_complexity Low_complexity 1 29 0 261 270 16 0 chr4 143701226 143701289 -40587373 + L2 LINE L2 3209 3272 0 513 265 183 69 chr4 143701407 143701460 -40587202 - L2 LINE L2 -6 3307 3261 3273 132 93 43 chr4 143701460 143702126 -40586536 + LTR34 LTR ERV1 1 699 0 513 265 183 69 chr4 143702126 143702769 -40585893 - L2 LINE L2 -52 3261 2494 21 0 0 0 chr4 143702774 143702795 -40585867 + AT_rich Low_complexity Low_complexity 1 21 0 4359 136 48 80 chr4 143702883 143703816 -40584846 + MER4D LTR ERV1 1 903 0 216 0 0 0 chr4 143703851 143703875 -40584787 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 233 229 16 16 chr4 143704737 143704798 -40583864 + L1M4 LINE L1 4877 4937 -1209 402 305 97 22 chr4 143705757 143705983 -40582679 - MIR SINE MIR 0 262 20 226 189 0 135 chr4 143706179 143706253 -40582409 - L2 LINE L2 0 3313 3250 271 345 11 0 chr4 143708204 143708291 -40580371 + MIR3 SINE MIR 10 97 -111 1599 156 26 7 chr4 143708994 143709296 -40579366 + MSTC LTR MaLR 1 308 -120 623 190 0 35 chr4 143709346 143709488 -40579174 + MSTC LTR MaLR 292 428 0 2378 89 3 0 chr4 143710743 143711045 -40577617 + AluSp SINE Alu 1 303 -10 246 355 54 6 chr4 143711460 143711626 -40577036 - MIR SINE MIR 0 262 89 213 93 56 0 chr4 143711817 143711871 -40576791 + (TA)n Simple_repeat Simple_repeat 1 57 0 4141 154 16 31 chr4 143712411 143713208 -40575454 + LTR1 LTR ERV1 1 785 0 400 18 0 0 chr4 143715074 143715129 -40573533 + L1PA2 LINE L1 6101 6155 0 189 74 0 0 chr4 143715328 143715355 -40573307 + (CAGAGA)n Simple_repeat Simple_repeat 4 30 0 210 357 0 0 chr4 143715359 143715429 -40573233 + GA-rich Low_complexity Low_complexity 1 70 0 362 251 156 17 chr4 143717345 143717524 -40571138 - MIR SINE MIR -1 261 58 1113 134 0 28 chr4 143717622 143717801 -40570861 - AluSx SINE Alu -11 301 128 306 98 0 0 chr4 143717801 143717852 -40570810 + (TTATA)n Simple_repeat Simple_repeat 4 54 0 2470 89 0 0 chr4 143717855 143718192 -40570470 - L1PA8 LINE L1 -31 6141 5805 1054 96 0 7 chr4 143718193 143718329 -40570333 - AluSx SINE Alu -178 135 1 648 267 92 29 chr4 143718878 143719084 -40569578 - MIR SINE MIR -40 222 4 189 0 0 0 chr4 143719277 143719298 -40569364 + (TG)n Simple_repeat Simple_repeat 2 22 0 6770 63 138 81 chr4 143719301 143720493 -40568169 - MER11A LTR ERVK -4 1262 2 477 0 0 0 chr4 143720493 143720546 -40568116 + (TG)n Simple_repeat Simple_repeat 1 53 0 183 80 0 0 chr4 143720546 143720571 -40568091 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 456 240 116 14 chr4 143721414 143721560 -40567102 + MIR SINE MIR 39 199 -63 257 301 225 25 chr4 143721903 143722060 -40566602 - L2 LINE L2 -1 3312 3188 943 208 103 32 chr4 143722060 143722372 -40566290 - MER46C DNA MER2_type 0 338 5 257 301 225 25 chr4 143722372 143722490 -40566172 - L2 LINE L2 -125 3188 2982 322 340 7 50 chr4 143722522 143722663 -40565999 + L2 LINE L2 3137 3271 -1 2022 96 7 24 chr4 143722695 143723008 -40565654 - AluSc SINE Alu 0 309 1 188 263 38 50 chr4 143723618 143723698 -40564964 - MIR3 SINE MIR -6 202 124 224 306 39 139 chr4 143724506 143724764 -40563898 - L2 LINE L2 -37 3235 3004 251 284 46 18 chr4 143725042 143725151 -40563511 - MLT1L LTR MaLR -356 259 148 655 319 37 33 chr4 143725362 143725603 -40563059 - MIR SINE MIR 0 262 21 1788 171 3 31 chr4 143725651 143725972 -40562690 + AluJb SINE Alu 1 312 0 1691 187 0 7 chr4 143726915 143727215 -40561447 + AluJb SINE Alu 1 298 -14 1386 206 125 68 chr4 143727489 143728081 -40560581 - MLT1E2 LTR MaLR 0 626 1 271 298 91 8 chr4 143728520 143728641 -40560021 - MIR SINE MIR -97 165 35 198 184 26 0 chr4 143728643 143728681 -40559981 + MER5B DNA MER1_type 20 58 -120 292 375 57 28 chr4 143728874 143729050 -40559612 - MIR3 SINE MIR -24 184 4 23 33 0 0 chr4 143729917 143729947 -40558715 + AT_rich Low_complexity Low_complexity 1 30 0 442 316 69 28 chr4 143730795 143731589 -40557073 + L1ME1 LINE L1 4135 4958 -1188 1183 246 225 17 chr4 143731645 143732403 -40556259 - L2 LINE L2 0 3313 2405 22 35 0 0 chr4 143732584 143732613 -40556049 + AT_rich Low_complexity Low_complexity 1 29 0 414 274 95 64 chr4 143732621 143732983 -40555679 + L1ME1 LINE L1 5258 5662 -459 2219 118 0 7 chr4 143732983 143733289 -40555373 + AluSx SINE Alu 1 304 -8 414 274 95 64 chr4 143733289 143733545 -40555117 + L1ME1 LINE L1 5662 5909 -212 27 29 0 0 chr4 143733547 143733581 -40555081 + AT_rich Low_complexity Low_complexity 1 34 0 1614 177 32 11 chr4 143733585 143733867 -40554795 + AluJo SINE Alu 1 288 -24 1066 241 14 43 chr4 143733929 143734278 -40554384 - MER2 DNA MER2_type -5 340 2 478 170 0 30 chr4 143734280 143734380 -40554282 + L1MD2 LINE L1 5811 5907 -452 * 2743 187 26 38 chr4 143734357 143734777 -40553885 + L1PA15-16 LINE L1 1589 2027 -4119 2326 100 10 0 chr4 143734777 143735078 -40553584 + AluSp SINE Alu 1 304 -9 2743 187 26 38 chr4 143735078 143735377 -40553285 + L1PA15-16 LINE L1 2027 2328 -3818 731 190 95 65 chr4 143735445 143735677 -40552985 + MSTA LTR MaLR 190 428 0 890 220 0 0 chr4 143735678 143735878 -40552784 + L1PA15-16 LINE L1 2395 2594 -3552 2301 115 0 0 chr4 143735881 143736237 -40552425 - L1P LINE L1 -1200 4946 4591 1566 103 135 81 chr4 143736273 143736621 -40552041 + L1PA16 LINE L1 5791 6157 -9 207 0 0 0 chr4 143736637 143736660 -40552002 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2447 42 0 7 chr4 143736681 143736965 -40551697 - AluY SINE Alu -13 298 17 35 0 0 0 chr4 143737260 143737295 -40551367 + AT_rich Low_complexity Low_complexity 1 35 0 576 247 7 13 chr4 143737318 143737472 -40551190 + L1ME1 LINE L1 6010 6162 -4 891 294 16 47 chr4 143738166 143738550 -40550112 + L2 LINE L2 2926 3297 -16 816 170 24 0 chr4 143738847 143739008 -40549654 + L1PA15 LINE L1 5953 6128 -37 30 0 0 0 chr4 143739014 143739044 -40549618 + AT_rich Low_complexity Low_complexity 1 30 0 199 135 0 58 chr4 143739081 143739133 -40549529 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 189 0 0 0 chr4 143739439 143739460 -40549202 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 289 284 0 0 chr4 143739785 143739852 -40548810 - MIR SINE MIR -2 260 194 1937 193 79 19 chr4 143739889 143740323 -40548339 + MER39 LTR ERV1 109 707 0 713 294 16 0 chr4 143740323 143740510 -40548152 - MIR SINE MIR -66 196 7 217 333 49 20 chr4 143740522 143740624 -40548038 + L3 LINE CR1 940 1044 -533 338 387 35 13 chr4 143740646 143740876 -40547786 + L3 LINE CR1 1282 1516 -61 706 215 49 0 chr4 143741246 143741390 -40547272 + MER63 DNA MER1_type 1 777 -285 807 224 55 38 chr4 143741393 143741630 -40547032 - MLT1D LTR MaLR 0 505 265 1480 241 112 22 chr4 143742094 143742558 -40546104 - LTR40a LTR ERVL 0 519 14 28 0 0 0 chr4 143742662 143742690 -40545972 + AT_rich Low_complexity Low_complexity 1 28 0 2545 127 46 5 chr4 143742838 143743233 -40545429 + MSTA LTR MaLR 1 411 -17 1148 277 31 72 chr4 143743697 143744263 -40544399 + L2 LINE L2 2746 3307 -6 348 327 142 0 chr4 143744297 143744459 -40544203 + MIR SINE MIR 53 237 -25 1640 162 73 25 chr4 143747689 143748047 -40540615 + THE1C LTR MaLR 1 375 0 5328 136 5 15 chr4 143748439 143749309 -40539353 + L1PA16 LINE L1 5295 6155 -11 1623 141 16 49 chr4 143749526 143749830 -40538832 + MER49 LTR ERV1 1 294 -629 272 184 20 21 chr4 143749836 143749905 -40538757 + MER4E LTR ERV1 105 282 -590 1227 233 30 30 chr4 143749936 143750275 -40538387 + MER4D LTR ERV1 558 896 -7 244 312 37 18 chr4 143751369 143751478 -40537184 - MARNA DNA Mariner -373 213 103 2418 58 0 35 chr4 143751542 143751852 -40536810 + AluY SINE Alu 1 299 -12 523 136 64 71 chr4 143751936 143752076 -40536586 + L1ME4a LINE L1 5982 6120 -1 22 0 0 0 chr4 143752076 143752098 -40536564 + AT_rich Low_complexity Low_complexity 1 22 0 2789 188 37 29 chr4 143753554 143754183 -40534479 + LTR27 LTR ERV1 3 636 0 307 351 89 73 chr4 143755292 143755551 -40533111 - L2 LINE L2 -2 3270 3008 730 315 106 26 chr4 143755555 143755904 -40532758 + MLT1J LTR MaLR 17 393 -118 981 248 103 43 chr4 143756208 143756604 -40532058 + MLT1H LTR MaLR 130 549 0 383 209 82 45 chr4 143756638 143756748 -40531914 - L2 LINE L2 -2 3311 3198 1222 360 65 49 chr4 143756751 143757338 -40531324 - L2 LINE L2 -513 2801 2225 2042 146 0 0 chr4 143757338 143757640 -40531022 + AluSx SINE Alu 1 302 -10 1222 360 65 49 chr4 143757640 143758226 -40530436 - L2 LINE L2 -1089 2225 1609 908 220 114 45 chr4 143758743 143759007 -40529655 + MLT1E LTR MaLR 90 371 -222 383 313 45 55 chr4 143759022 143759223 -40529439 - L2 LINE L2 -1286 2028 1830 824 218 98 5 chr4 143759227 143759420 -40529242 + MLT1E LTR MaLR 383 593 0 501 266 109 5 chr4 143759792 143759976 -40528686 + MIR SINE MIR 42 244 -18 2177 118 0 0 chr4 143760125 143760413 -40528249 + AluSx SINE Alu 1 288 -24 189 0 0 0 chr4 143760428 143760449 -40528213 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 22 103 0 0 chr4 143763136 143763214 -40525448 + AT_rich Low_complexity Low_complexity 1 78 0 180 399 29 33 chr4 143763640 143763883 -40524779 - L2 LINE L2 -480 2834 2593 243 178 22 0 chr4 143763884 143763929 -40524733 + L1MC5 LINE L1 7181 7226 -735 409 215 136 37 chr4 143764069 143764260 -40524402 + L1MC5 LINE L1 7273 7482 -479 1918 149 0 19 chr4 143764270 143764586 -40524076 + AluSx SINE Alu 1 310 -2 26 0 0 0 chr4 143764586 143764612 -40524050 + AT_rich Low_complexity Low_complexity 1 26 0 339 300 36 14 chr4 143764820 143764960 -40523702 + L1MC5 LINE L1 7710 7852 -109 384 312 16 79 chr4 143765114 143765176 -40523486 - L2 LINE L2 -837 2477 2413 2164 121 7 0 chr4 143765176 143765474 -40523188 + AluSx SINE Alu 1 300 -12 384 312 16 79 chr4 143765474 143765600 -40523062 - L2 LINE L2 -901 2413 2301 436 364 21 75 chr4 143765846 143765917 -40522745 + HAL1 LINE L1 7 80 -2427 3160 196 108 5 chr4 143765917 143766581 -40522081 + MER44D DNA MER2_type 1 605 0 436 364 21 75 chr4 143766581 143766883 -40521779 + HAL1 LINE L1 80 360 -2147 2227 259 32 65 chr4 143767416 143768207 -40520455 + L1MEc LINE L1 34 798 -5598 1507 225 26 12 chr4 143768213 143768559 -40520103 - MLT1A1 LTR MaLR 0 365 15 1930 252 67 33 chr4 143768576 143769526 -40519136 + L1MEc LINE L1 802 1784 -4612 * 3247 246 92 18 chr4 143769513 143771299 -40517363 + L1MEc LINE L1 1627 3503 -2712 1089 238 74 41 chr4 143771302 143771667 -40516995 + LTR16A1 LTR ERVL 81 457 0 350 269 185 0 chr4 143771667 143771775 -40516887 + LTR50 LTR ERVL 144 271 -524 1563 188 97 41 chr4 143771775 143772147 -40516515 + MLT1C LTR MaLR 1 403 -64 2231 84 10 0 chr4 143772147 143772445 -40516217 - AluSp SINE Alu -12 301 1 1563 188 97 41 chr4 143772445 143772514 -40516148 + MLT1C LTR MaLR 403 467 0 547 232 272 8 chr4 143772586 143772840 -40515822 + LTR50 LTR ERVL 471 791 -4 266 362 0 11 chr4 143772843 143772937 -40515725 + L2 LINE L2 2755 2847 -467 * 488 313 143 15 chr4 143772911 143773176 -40515486 + L2 LINE L2 2988 3286 -27 1802 149 10 14 chr4 143773406 143773694 -40514968 - AluJo SINE Alu -25 287 1 497 314 125 18 chr4 143774299 143774579 -40514083 + L2 LINE L2 2995 3304 -9 511 311 82 22 chr4 143774924 143775107 -40513555 - MER91A DNA MER1_type -2 194 1 327 25 0 0 chr4 143776824 143776864 -40511798 + (TG)n Simple_repeat Simple_repeat 2 41 0 26 50 0 0 chr4 143777578 143777618 -40511044 + GC_rich Low_complexity Low_complexity 1 40 0 30 45 0 0 chr4 143777712 143777756 -40510906 + GC_rich Low_complexity Low_complexity 1 44 0 189 175 0 0 chr4 143778049 143778089 -40510573 + CT-rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr4 143780529 143780550 -40508112 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 143781169 143781198 -40507464 + AT_rich Low_complexity Low_complexity 1 29 0 337 288 13 59 chr4 143784980 143785133 -40503529 - MIR SINE MIR -50 212 67 235 288 0 0 chr4 143787238 143787297 -40501365 + tRNA-Ile-ATT tRNA tRNA 4 62 -15 29 60 0 0 chr4 143789129 143789179 -40499483 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr4 143789520 143789541 -40499121 + AT_rich Low_complexity Low_complexity 1 21 0 1900 130 4 0 chr4 143790048 143790060 -40498602 - AluSx SINE Alu -14 298 288 306 24 24 0 chr4 143790060 143790102 -40498560 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 1900 130 4 0 chr4 143790102 143790365 -40498297 - AluSx SINE Alu -24 288 22 22 0 0 0 chr4 143791562 143791584 -40497078 + AT_rich Low_complexity Low_complexity 1 22 0 231 276 129 67 chr4 143793775 143793985 -40494677 + L3b LINE CR1 1350 1572 -11 745 189 18 30 chr4 143794672 143794721 -40493941 + MER5B DNA MER1_type 17 65 -113 1965 143 0 27 chr4 143794721 143795022 -40493640 + AluSx SINE Alu 1 293 -19 745 189 18 30 chr4 143795022 143795136 -40493526 + MER5B DNA MER1_type 65 178 0 1756 136 62 7 chr4 143796802 143797075 -40491587 - AluSx SINE Alu -24 288 1 423 0 0 0 chr4 143797966 143798013 -40490649 + (TG)n Simple_repeat Simple_repeat 1 47 0 397 97 43 56 chr4 143798014 143798116 -40490546 - L1MA9 LINE L1 -12 6156 6060 460 256 90 0 chr4 143798193 143798349 -40490313 - MIR SINE MIR -91 171 2 551 230 12 62 chr4 143798460 143798621 -40490041 + MIR SINE MIR 16 168 -94 1602 184 11 4 chr4 143798796 143799073 -40489589 + AluJo SINE Alu 11 289 -23 189 0 0 0 chr4 143799717 143799738 -40488924 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2017 115 10 17 chr4 143799753 143800048 -40488614 + AluSx SINE Alu 1 293 -19 2213 102 0 0 chr4 143800200 143800495 -40488167 + AluSc SINE Alu 12 306 -3 35 0 0 0 chr4 143800720 143800755 -40487907 + AT_rich Low_complexity Low_complexity 1 35 0 2016 114 17 14 chr4 143801582 143801871 -40486791 + AluSc SINE Alu 1 290 -19 1957 129 18 0 chr4 143801903 143802189 -40486473 + AluSx SINE Alu 8 298 -14 289 28 0 0 chr4 143802205 143802241 -40486421 - MADE1 DNA Mariner 0 80 45 252 86 0 0 chr4 143802482 143802517 -40486145 + (A)n Simple_repeat Simple_repeat 1 35 0 184 357 0 29 chr4 143803363 143803433 -40485229 + MIR3 SINE MIR 106 173 -35 1965 138 0 3 chr4 143803436 143803725 -40484937 + AluSg SINE Alu 18 305 -5 556 194 64 158 chr4 143804154 143804405 -40484257 - L2 LINE L2 -378 2936 2722 2193 107 16 7 chr4 143804405 143804713 -40483949 - AluSx SINE Alu -1 311 1 556 194 64 158 chr4 143804713 143804791 -40483871 - L2 LINE L2 -592 2722 2638 437 313 69 0 chr4 143804780 143804940 -40483722 + MIR3 SINE MIR 22 192 -16 * 183 205 0 0 chr4 143807386 143807425 -40481237 + (TA)n Simple_repeat Simple_repeat 1 39 0 351 269 67 15 chr4 143808325 143808459 -40480203 - MLT1K LTR MaLR -437 151 11 586 285 88 7 chr4 143809040 143809371 -40479291 - MLT1K LTR MaLR -181 407 10 6695 56 17 3 chr4 143810108 143811437 -40477225 - L1PA7 LINE L1 0 6154 4806 440 227 123 45 chr4 143812963 143813117 -40475545 - MER46C DNA MER2_type -147 191 26 2187 112 3 3 chr4 143813135 143813439 -40475223 - AluSc SINE Alu -5 304 1 384 127 56 0 chr4 143814192 143814263 -40474399 + L1MC2 LINE L1 6258 6332 -12 22 35 0 0 chr4 143815023 143815052 -40473610 + AT_rich Low_complexity Low_complexity 1 29 0 1003 200 9 33 chr4 143815363 143815573 -40473089 + MER58A DNA MER1_type 17 221 -3 1443 44 0 102 chr4 143815661 143815867 -40472795 - AluY SINE Alu -126 185 1 444 256 72 8 chr4 143816532 143816657 -40472005 + MER94 DNA DNA 2 134 0 261 0 0 0 chr4 143819040 143819069 -40469593 + (T)n Simple_repeat Simple_repeat 1 29 0 423 280 38 30 chr4 143819195 143819327 -40469335 - MIR SINE MIR -77 185 53 2042 106 4 0 chr4 143821086 143821378 -40467284 - AluSx SINE Alu 0 312 20 23 0 0 0 chr4 143822965 143822988 -40465674 + AT_rich Low_complexity Low_complexity 1 23 0 375 270 60 74 chr4 143823381 143823596 -40465066 - MIR SINE MIR -30 232 21 252 250 135 95 chr4 143823735 143823883 -40464779 + L2 LINE L2 2926 3079 -193 505 272 149 22 chr4 143824019 143824247 -40464415 - MIR SINE MIR 0 262 6 452 333 15 26 chr4 143824779 143824974 -40463688 - L3b LINE CR1 -275 1308 1116 21 0 0 0 chr4 143826950 143826971 -40461691 + AT_rich Low_complexity Low_complexity 1 21 0 245 233 189 11 chr4 143827515 143827605 -40461057 - MER63 DNA MER1_type -329 733 2 595 306 16 16 chr4 143827928 143828121 -40460541 + MIR SINE MIR 57 249 -13 213 366 183 0 chr4 143828171 143828242 -40460420 - L2 LINE L2 -44 3228 3145 27 29 0 0 chr4 143828979 143829013 -40459649 + AT_rich Low_complexity Low_complexity 1 34 0 1455 147 40 2 chr4 143829566 143829839 -40458823 + MER7A DNA MER2_type 1 336 0 2203 213 108 91 chr4 143830275 143831042 -40457620 - MER21B LTR ERV1 -62 801 22 1809 192 65 44 chr4 143831671 143832166 -40456496 + MLT1D LTR MaLR 1 505 0 339 292 77 31 chr4 143832826 143832956 -40455706 + L2 LINE L2 3175 3310 -3 820 213 6 6 chr4 143833297 143833461 -40455201 + FRAM SINE Alu 1 164 -12 2229 89 10 0 chr4 143834224 143834516 -40454146 + AluSq SINE Alu 1 295 -18 200 283 67 0 chr4 143838649 143838709 -40449953 + MIR SINE MIR 86 149 -59 21 0 0 0 chr4 143839047 143839068 -40449594 + AT_rich Low_complexity Low_complexity 1 21 0 1275 210 114 0 chr4 143839070 143839332 -40449330 - AluJo SINE Alu -20 292 1 181 354 123 15 chr4 143839957 143840087 -40448575 + MIR SINE MIR 106 249 -13 1541 169 18 0 chr4 143841075 143841347 -40447315 - L1MC1 LINE L1 -23 6310 6034 27 29 0 0 chr4 143841828 143841862 -40446800 + AT_rich Low_complexity Low_complexity 1 34 0 1094 159 13 62 chr4 143841917 143842144 -40446518 + MER20 DNA MER1_type 1 216 -3 236 346 112 0 chr4 143842258 143842365 -40446297 - L2 LINE L2 -7 3265 3147 2100 74 3 0 chr4 143842612 143842897 -40445765 - L1PA8 LINE L1 0 6172 5887 207 0 0 0 chr4 143844175 143844198 -40444464 + (TG)n Simple_repeat Simple_repeat 1 23 0 922 248 102 0 chr4 143844389 143844615 -40444047 - MIR SINE MIR -11 251 3 24 0 0 0 chr4 143845978 143846002 -40442660 + AT_rich Low_complexity Low_complexity 1 24 0 2211 119 0 3 chr4 143847859 143848169 -40440493 + AluSq SINE Alu 5 313 0 22 70 0 0 chr4 143848807 143848850 -40439812 + AT_rich Low_complexity Low_complexity 1 43 0 287 113 19 0 chr4 143849024 143849077 -40439585 + CT-rich Low_complexity Low_complexity 1 54 0 1097 258 89 60 chr4 143849250 143850016 -40438646 - L2 LINE L2 -4 3309 2521 243 79 0 0 chr4 143852572 143852610 -40436052 + (CA)n Simple_repeat Simple_repeat 1 38 0 2269 97 0 7 chr4 143852907 143853206 -40435456 + AluSx SINE Alu 1 297 -15 2152 120 0 10 chr4 143853859 143854158 -40434504 + AluSx SINE Alu 1 296 -16 717 149 52 0 chr4 143855788 143855922 -40432740 - L1MA7 LINE L1 -9 6282 6142 189 0 0 0 chr4 143855937 143855958 -40432704 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 432 104 0 0 chr4 143855957 143856024 -40432638 + (TA)n Simple_repeat Simple_repeat 1 67 0 255 103 0 0 chr4 143856933 143856972 -40431690 + (TG)n Simple_repeat Simple_repeat 2 40 0 2208 88 0 7 chr4 143856972 143857257 -40431405 - AluSq SINE Alu -28 285 3 24 32 0 0 chr4 143857732 143857763 -40430899 + AT_rich Low_complexity Low_complexity 1 31 0 1277 256 62 8 chr4 143858359 143858714 -40429948 - MLT1A2 LTR MaLR 0 374 1 188 253 291 0 chr4 143859172 143859251 -40429411 + MIR3 SINE MIR 12 113 -95 281 206 304 11 chr4 143860773 143860865 -40427797 - MER5A DNA MER1_type -7 182 64 395 308 43 0 chr4 143862540 143862657 -40426005 - L2 LINE L2 -1 3312 3191 2177 133 0 0 chr4 143862700 143863008 -40425654 - AluSq SINE Alu -5 308 1 212 128 0 21 chr4 143865496 143865543 -40423119 + (TAAAAA)n Simple_repeat Simple_repeat 4 49 0 1977 141 3 0 chr4 143867425 143867723 -40420939 - AluSx SINE Alu -13 299 1 23 0 0 0 chr4 143869353 143869376 -40419286 + AT_rich Low_complexity Low_complexity 1 23 0 34 0 0 0 chr4 143869972 143870006 -40418656 + AT_rich Low_complexity Low_complexity 1 34 0 25 31 0 0 chr4 143872416 143872448 -40416214 + AT_rich Low_complexity Low_complexity 1 32 0 2210 105 10 13 chr4 143872657 143872970 -40415692 - AluSx SINE Alu 0 312 1 246 156 0 0 chr4 143873257 143873302 -40415360 + CT-rich Low_complexity Low_complexity 1 45 0 237 152 0 0 chr4 143873311 143873357 -40415305 - LTR66 LTR ERVL -171 439 394 210 71 0 0 chr4 143873359 143873387 -40415275 + (CATA)n Simple_repeat Simple_repeat 4 31 0 524 143 26 0 chr4 143874085 143874239 -40414423 + (TA)n Simple_repeat Simple_repeat 2 159 0 322 221 20 101 chr4 143874247 143874396 -40414266 - L1MC4 LINE L1 -1333 6709 6573 21 0 0 0 chr4 143874673 143874694 -40413968 + AT_rich Low_complexity Low_complexity 1 21 0 202 219 47 0 chr4 143874875 143874939 -40413723 + (TA)n Simple_repeat Simple_repeat 1 67 0 229 208 19 19 chr4 143875989 143876042 -40412620 - L2 LINE L2 0 3313 3261 257 290 24 16 chr4 143876189 143876313 -40412349 + (TA)n Simple_repeat Simple_repeat 1 125 0 23 78 0 0 chr4 143876571 143876622 -40412040 + AT_rich Low_complexity Low_complexity 1 51 0 518 263 51 6 chr4 143877457 143877632 -40411030 + LTR33A LTR ERVL 341 523 0 2069 113 13 26 chr4 143877681 143877992 -40410670 - AluSc SINE Alu 0 309 3 1879 104 45 4 chr4 143877993 143878261 -40410401 - AluSq SINE Alu -34 279 1 4820 16 2 2 chr4 143878847 143879406 -40409256 - L1PA2 LINE L1 0 6155 5597 3321 19 2 0 chr4 143879406 143880016 -40408646 + L1PA2 LINE L1 4997 5607 -548 220 283 8 92 chr4 143880325 143880445 -40408217 + MIR SINE MIR 32 141 -67 1758 157 35 67 chr4 143881057 143881458 -40407204 - MLT1B LTR MaLR -2 388 1 366 268 191 6 chr4 143881514 143881671 -40406991 - MER5A DNA MER1_type 0 189 4 4406 143 32 45 chr4 143882230 143883104 -40405558 - L1MC1 LINE L1 -1 6332 5470 1645 176 30 10 chr4 143883113 143883414 -40405248 + AluJo SINE Alu 1 307 -5 997 152 0 6 chr4 143883599 143883763 -40404899 + MER3 DNA MER1_type 1 163 -46 595 250 149 34 chr4 143884555 143884608 -40404054 - MIR SINE MIR 0 262 216 1922 208 42 20 chr4 143884608 143885060 -40403602 - LTR40b LTR ERVL 0 462 1 595 250 149 34 chr4 143885060 143885214 -40403448 - MIR SINE MIR -46 216 31 1618 185 46 8 chr4 143885214 143885582 -40403080 - Charlie5 DNA MER1_type 0 2624 2243 512 177 0 85 chr4 143885587 143885717 -40402945 - MER3 DNA MER1_type -85 124 53 580 274 86 51 chr4 143885933 143886167 -40402495 + MIR SINE MIR 21 262 0 180 325 158 18 chr4 143886446 143886560 -40402102 + MER5B DNA MER1_type 31 160 -18 * 382 274 10 10 chr4 143886477 143886579 -40402083 - MER5A DNA MER1_type -79 110 9 2621 42 0 0 chr4 143887730 143888040 -40400622 - AluY SINE Alu -1 310 1 261 229 29 9 chr4 143888328 143888433 -40400229 + GA-rich Low_complexity Low_complexity 3 109 0 9386 167 23 11 chr4 143888846 143890706 -40397956 + L1PB3 LINE L1 3238 5146 -1008 2218 92 6 25 chr4 143890706 143891021 -40397641 + AluY SINE Alu 1 309 -2 9386 167 23 11 chr4 143891021 143892028 -40396634 + L1PB3 LINE L1 5146 6140 -14 3873 139 2 0 chr4 143892028 143892605 -40396057 - LTR9 LTR ERV1 -33 579 2 5674 191 11 15 chr4 143892605 143893668 -40394994 + L1PA15 LINE L1 4083 5133 -1032 273 29 0 0 chr4 143893668 143893702 -40394960 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 5674 191 11 15 chr4 143893702 143894726 -40393936 + L1PA15 LINE L1 5133 6160 -5 13909 135 8 8 chr4 143894789 143897102 -40391560 - Tigger1 DNA MER2_type -105 2313 2 6417 88 2 11 chr4 143897894 143899265 -40389397 + L1PA13 LINE L1 4801 6162 -1 2169 130 3 10 chr4 143899474 143899782 -40388880 - AluSx SINE Alu -6 306 1 41751 44 1 1 chr4 143899847 143905995 -40382667 + L1PA3 LINE L1 12 6155 0 251 286 109 17 chr4 143906050 143906169 -40382493 - L2 LINE L2 -3 3310 3181 733 280 128 22 chr4 143906223 143906751 -40381911 + MLT1G LTR MaLR 1 537 -5 257 332 166 10 chr4 143906880 143907073 -40381589 - L2 LINE L2 -358 2956 2734 409 255 161 0 chr4 143908374 143908521 -40380141 - MER5A DNA MER1_type -6 183 13 300 184 0 0 chr4 143908521 143908570 -40380092 + MER5A DNA MER1_type 4 52 -137 2346 133 47 7 chr4 143908577 143908982 -40379680 - MSTA LTR MaLR -7 421 1 696 212 0 41 chr4 143908982 143909128 -40379534 + MER5A DNA MER1_type 47 186 -3 267 245 32 53 chr4 143910074 143910168 -40378494 - MIR SINE MIR -47 215 124 23 33 0 0 chr4 143910682 143910712 -40377950 + AT_rich Low_complexity Low_complexity 1 30 0 281 250 0 11 chr4 143910804 143910892 -40377770 + CT-rich Low_complexity Low_complexity 3 89 0 568 263 17 0 chr4 143911548 143911666 -40376996 - L2 LINE L2 -1 3271 3152 878 224 56 4 chr4 143912054 143912304 -40376358 + L1MD3 LINE L1 7733 7995 0 198 103 0 0 chr4 143912658 143912687 -40375975 + (CA)n Simple_repeat Simple_repeat 1 29 0 342 322 103 7 chr4 143913178 143913324 -40375338 - MIR3 SINE MIR -2 206 47 2365 167 53 28 chr4 143914827 143915372 -40373290 - L1MA7 LINE L1 -4 6287 5729 239 289 112 46 chr4 143915377 143915489 -40373173 + MIR3 SINE MIR 47 173 -35 4415 148 17 8 chr4 143915489 143916294 -40372368 + L1MA4 LINE L1 5488 6300 0 239 289 112 46 chr4 143916294 143916333 -40372329 + MIR3 SINE MIR 173 208 0 379 375 38 13 chr4 143916717 143916954 -40371708 - MIR SINE MIR -3 259 17 423 252 0 15 chr4 143920518 143920649 -40368013 + L1MB4 LINE L1 1706 1834 -4550 7018 171 17 35 chr4 143920689 143921854 -40366808 - L1PA13 LINE L1 -4 6159 5036 565 47 12 12 chr4 143921854 143921940 -40366722 + (TA)n Simple_repeat Simple_repeat 1 86 0 7018 171 17 35 chr4 143921940 143923046 -40365616 - L1PA13 LINE L1 -1127 5036 3911 39366 57 7 1 chr4 143923049 143928312 -40360350 + L1P LINE L1 11 5307 -839 1182 181 44 22 chr4 143928331 143928601 -40360061 + MSTA-int LTR MaLR 1305 1580 0 2182 174 62 0 chr4 143928601 143929004 -40359658 + MSTA LTR MaLR 1 428 0 578 266 49 14 chr4 143929005 143929291 -40359371 + L1MB4 LINE L1 3295 3590 -2792 25 0 0 0 chr4 143929291 143929316 -40359346 + AT_rich Low_complexity Low_complexity 1 25 0 14608 124 39 5 chr4 143929337 143931759 -40356903 - L1PBa LINE L1 -4356 2507 3 1710 236 71 2 chr4 143931764 143932285 -40356377 + L1MB4 LINE L1 3588 4144 -2238 1450 231 80 0 chr4 143932291 143932703 -40355959 + MLT2B1 LTR ERVL 5 449 -71 512 30 15 0 chr4 143932704 143932770 -40355892 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 687 220 40 22 chr4 143932905 143933128 -40355534 + L1MB4 LINE L1 5194 5420 -962 5501 169 30 5 chr4 143933128 143933489 -40355173 - L1PB3 LINE L1 0 6154 5803 717 73 0 0 chr4 143933489 143933585 -40355077 + (TA)n Simple_repeat Simple_repeat 1 96 0 5501 169 30 5 chr4 143933585 143935209 -40353453 - L1PB3 LINE L1 -351 5803 4125 1813 203 14 21 chr4 143935204 143935340 -40353322 + L1MB4 LINE L1 5405 5541 -879 * 7540 30 14 0 chr4 143935340 143936385 -40352277 - L1PA4 LINE L1 -4 6151 5104 1813 203 14 21 chr4 143936385 143936783 -40351879 + L1MB4 LINE L1 5541 5940 -480 226 297 14 0 chr4 143936999 143937073 -40351589 - MIR SINE MIR -154 108 34 1369 167 19 41 chr4 143937321 143937432 -40351230 + L1MB4 LINE L1 5923 6035 -381 237 33 0 0 chr4 143937432 143937462 -40351200 + (TG)n Simple_repeat Simple_repeat 1 30 0 1369 167 19 41 chr4 143937462 143937668 -40350994 + L1MB4 LINE L1 6035 6233 -183 8491 180 39 74 chr4 143937675 143940007 -40348655 + L1MA4A LINE L1 546 3253 -3956 6848 96 22 0 chr4 143940007 143940986 -40347676 + L1P3 LINE L1 1 1001 -5460 620 99 0 10 chr4 143940983 143941084 -40347578 + L1P LINE L1 4555 4654 -1492 * 9019 53 101 5 chr4 143941087 143942380 -40346282 + L1PA7 LINE L1 1 1416 -4730 6396 20 0 1 chr4 143942381 143943123 -40345539 + L1PA2 LINE L1 5414 6154 -1 * 6957 66 3 0 chr4 143943108 143944604 -40344058 + L1PA7 LINE L1 4625 6154 0 13387 183 34 11 chr4 143944625 143945050 -40343612 + L1MA4A LINE L1 3238 3652 -3594 2650 106 38 9 chr4 143945050 143945475 -40343187 - L1PA13 LINE L1 0 6163 5727 13387 183 34 11 chr4 143945475 143945869 -40342793 + L1MA4A LINE L1 3652 4036 -3210 2305 102 0 0 chr4 143945869 143946162 -40342500 + AluSc SINE Alu 1 293 -16 13387 183 34 11 chr4 143946162 143948538 -40340124 + L1MA4A LINE L1 4036 6503 -743 797 145 7 14 chr4 143948538 143948680 -40339982 + L1PB3 LINE L1 6011 6154 0 5151 120 39 6 chr4 143948680 143949521 -40339141 + L1MA4A LINE L1 6490 7360 -5 507 281 96 68 chr4 143949549 143949873 -40338789 - MLT1K LTR MaLR -169 419 87 538 279 132 60 chr4 143949998 143950363 -40338299 + LTR16C LTR ERVL 97 487 -4 2209 153 32 0 chr4 143950581 143950959 -40337703 - MLT1B LTR MaLR 0 390 1 918 148 13 0 chr4 143952809 143952958 -40335704 - MER20 DNA MER1_type -3 216 66 518 248 69 55 chr4 143952997 143953215 -40335447 + L1ME2 LINE L1 4112 4340 -1806 1683 133 0 12 chr4 143953215 143953471 -40335191 + AluSx SINE Alu 38 290 -22 518 248 69 55 chr4 143953471 143953656 -40335006 + L1ME2 LINE L1 4340 4521 -1625 972 187 114 0 chr4 143953688 143953854 -40334808 + AluJo SINE Alu 11 195 -117 463 228 79 37 chr4 143953868 143953993 -40334669 + L1ME2 LINE L1 4556 4695 -1451 2305 122 3 0 chr4 143953993 143954297 -40334365 + AluSx SINE Alu 1 305 -7 463 228 79 37 chr4 143954297 143954386 -40334276 + L1ME2 LINE L1 4695 4779 -1367 2226 130 12 0 chr4 143954512 143954858 -40333804 - L1PA15 LINE L1 -335 5830 5481 7438 27 5 9 chr4 143954858 143956234 -40332428 - L1PA3 LINE L1 -1 6154 4777 2135 19 0 0 chr4 143956234 143956493 -40332169 + L1PA3 LINE L1 4534 4792 -1354 1432 96 0 30 chr4 143956493 143956753 -40331909 - L1PA15 LINE L1 -677 5488 5236 1579 235 91 38 chr4 143956794 143957705 -40330957 + L1ME2 LINE L1 4864 5832 -330 794 233 53 0 chr4 143957708 143957897 -40330765 + MER63A DNA MER1_type 12 210 0 503 286 47 13 chr4 143957898 143958151 -40330511 + L1ME2 LINE L1 5823 6087 -79 923 43 0 0 chr4 143958186 143958302 -40330360 + L1PA4 LINE L1 6037 6152 -3 216 196 0 0 chr4 143958305 143958351 -40330311 + A-rich Low_complexity Low_complexity 1 46 0 610 311 88 6 chr4 143958449 143958767 -40329895 + HAL1 LINE L1 11 354 -2153 * 1466 266 124 49 chr4 143958765 143959746 -40328916 + HAL1 LINE L1 1444 2498 -9 2234 105 7 0 chr4 143959817 143960112 -40328550 + AluSq SINE Alu 1 297 -16 477 262 27 33 chr4 143960196 143960379 -40328283 + L1ME1 LINE L1 4828 5009 -1137 2013 222 2 47 chr4 143960485 143960765 -40327897 + L1ME1 LINE L1 5427 5674 -492 1697 165 8 0 chr4 143960765 143961076 -40327586 - AluJb SINE Alu 0 327 15 2013 222 2 47 chr4 143961076 143961330 -40327332 + L1ME1 LINE L1 5674 5938 -228 610 206 8 8 chr4 143961355 143961486 -40327176 + FLAM_A SINE Alu 6 136 -6 514 244 42 75 chr4 143961504 143961717 -40326945 + L1ME1 LINE L1 5951 6156 -10 667 239 93 28 chr4 143961731 143962053 -40326609 + L1MD3 LINE L1 7653 7995 0 361 320 54 45 chr4 143962271 143962624 -40326038 + HAL1 LINE L1 1296 1651 -856 918 318 113 12 chr4 143962920 143963612 -40325050 + L1MEc LINE L1 74 835 -5561 1239 169 139 54 chr4 143963612 143963944 -40324718 + MLT1A1 LTR MaLR 1 360 -5 304 244 77 0 chr4 143963946 143964024 -40324638 + L1MEc LINE L1 828 911 -5485 886 283 100 20 chr4 143964120 143964831 -40323831 + L1MEc LINE L1 1055 1822 -4574 794 235 68 26 chr4 143965404 143965627 -40323035 + MLT1H LTR MaLR 1 202 -349 2407 103 0 0 chr4 143965711 143966013 -40322649 + AluSp SINE Alu 1 302 -11 503 230 103 0 chr4 143966034 143966160 -40322502 - MIR SINE MIR -84 178 40 1615 171 35 14 chr4 143966206 143966492 -40322170 - AluJo SINE Alu -19 293 2 354 323 79 12 chr4 143966502 143966666 -40321996 + L1MC4a LINE L1 5781 5955 -1853 5039 175 49 20 chr4 143967210 143968450 -40320212 - L1MA9 LINE L1 -1 6311 5051 6721 154 14 28 chr4 143968488 143969739 -40318923 + L1P LINE L1 11 1243 -4903 4176 100 33 18 chr4 143969842 143970720 -40317942 + L1P2 LINE L1 4784 5684 -471 4432 177 41 15 chr4 143971688 143972643 -40316019 - L1PBa LINE L1 -5416 1447 468 23 103 0 0 chr4 143973457 143973486 -40315176 + AT_rich Low_complexity Low_complexity 1 29 0 4120 165 39 16 chr4 143973948 143974750 -40313912 - L1PBa LINE L1 -6039 824 5 2063 132 7 3 chr4 143975797 143976092 -40312570 + AluSx SINE Alu 1 296 -16 825 243 190 6 chr4 143976202 143976629 -40312033 + MER69 DNA AcHobo 2 568 -1958 4804 72 27 0 chr4 143976956 143977873 -40310789 - L1P3 LINE L1 -563 5591 4648 3306 49 28 4 chr4 143977874 143978340 -40310322 - L1PA2 LINE L1 -1 6154 5678 22 35 0 0 chr4 143978870 143978899 -40309763 + GC_rich Low_complexity Low_complexity 1 29 0 5046 116 6 14 chr4 143979295 143980149 -40308513 - L1PA7 LINE L1 -4 6150 5304 4855 94 5 20 chr4 143980536 143980834 -40307828 - L1PA6 LINE L1 -80 6074 5773 1060 58 0 0 chr4 143980834 143980972 -40307690 - L1PA4 LINE L1 0 6155 6018 4855 94 5 20 chr4 143980972 143981437 -40307225 - L1PA6 LINE L1 -381 5773 5322 826 226 38 19 chr4 143982596 143982857 -40305805 + MLT1B LTR MaLR 1 266 -124 4782 196 26 71 chr4 143984249 143985537 -40303125 - L1M2 LINE L1 -4672 2177 949 1237 373 82 6 chr4 143985809 143986493 -40302169 - L2 LINE L2 -338 2976 2241 326 237 93 0 chr4 143987303 143987400 -40301262 - MLT1H LTR MaLR -16 533 428 767 298 48 12 chr4 143987955 143988203 -40300459 - MIR SINE MIR -4 258 2 445 270 15 20 chr4 143988221 143988421 -40300241 + L1ME3A LINE L1 3567 3765 -2381 1892 227 117 18 chr4 143988533 143989184 -40299478 + L1ME3A LINE L1 5374 6090 -80 223 319 14 14 chr4 143989336 143989408 -40299254 - L2 LINE L2 -18 3254 3183 21 0 0 0 chr4 143989450 143989471 -40299191 + AT_rich Low_complexity Low_complexity 1 21 0 200 317 106 10 chr4 143989820 143989924 -40298738 - MIR SINE MIR -65 143 30 863 215 27 73 chr4 143991606 143992060 -40296602 + L1ME3A LINE L1 5119 5551 -613 23 0 0 0 chr4 143992060 143992083 -40296579 + AT_rich Low_complexity Low_complexity 1 23 0 281 111 0 0 chr4 143992083 143992128 -40296534 - L1MA3 LINE L1 0 6305 6261 * 1823 216 75 30 chr4 143992127 143992676 -40295986 + L1ME3A LINE L1 5537 6060 -110 297 0 0 0 chr4 143992676 143992709 -40295953 + (TC)n Simple_repeat Simple_repeat 2 34 0 293 0 27 0 chr4 143992708 143992745 -40295917 + (TA)n Simple_repeat Simple_repeat 1 38 0 * 1823 216 75 30 chr4 143992709 143992797 -40295865 + L1ME3A LINE L1 6060 6165 -5 838 200 29 0 chr4 143992935 143993105 -40295557 + L1PA15 LINE L1 5990 6164 -1 467 242 79 37 chr4 143993133 143993222 -40295440 - L1M4 LINE L1 -1367 4779 4695 2242 125 3 3 chr4 143993222 143993527 -40295135 - AluSx SINE Alu -7 305 1 467 242 79 37 chr4 143993527 143993652 -40295010 - L1M4 LINE L1 -1451 4695 4556 846 217 114 0 chr4 143993666 143993832 -40294830 - AluJb SINE Alu -117 195 11 571 256 75 54 chr4 143993862 143994049 -40294613 - L1M4 LINE L1 -1623 4523 4341 1655 137 0 12 chr4 143994049 143994305 -40294357 - AluSx SINE Alu -22 290 38 571 256 75 54 chr4 143994305 143994546 -40294116 - L1M4 LINE L1 -1805 4341 4086 972 148 13 0 chr4 143994562 143994711 -40293951 + MER20 DNA MER1_type 66 216 -3 3027 131 0 0 chr4 143997325 143997746 -40290916 + L1PA15-16 LINE L1 5 425 -6424 3100 125 2 2 chr4 143997750 143998215 -40290447 + L1PA16 LINE L1 5538 6002 -164 295 224 172 8 chr4 143998215 143998349 -40290313 - L1M4 LINE L1 -1321 4825 4670 728 245 0 27 chr4 143998803 143998991 -40289671 - MIR SINE MIR -46 216 34 2192 138 99 8 chr4 144000030 144000422 -40288240 + MSTA LTR MaLR 1 428 0 291 302 40 8 chr4 144000919 144001045 -40287617 + MERVL LTR ERVL 2867 2996 -2489 374 229 11 99 chr4 144001094 144001275 -40287387 - MLT1H LTR MaLR 0 549 269 579 215 62 15 chr4 144001495 144001625 -40287037 + MERVL LTR ERVL 3087 3222 -2542 599 251 35 35 chr4 144001925 144002124 -40286538 + MERVL LTR ERVL 4029 4227 -1537 5966 117 7 0 chr4 144002487 144004008 -40284654 + L1PA15 LINE L1 4660 6185 0 289 311 66 30 chr4 144004054 144004388 -40284274 + L1ME LINE L1 3357 3702 -2444 7065 56 2 26 chr4 144004445 144005996 -40282666 - L1PA7 LINE L1 -4 6150 4617 7069 107 25 16 chr4 144005996 144007057 -40281605 + MER11C LTR ERVK 1 1071 0 1649 81 0 0 chr4 144007059 144007282 -40281380 - L1PA7 LINE L1 -1526 4620 4398 3847 79 0 0 chr4 144007286 144007804 -40280858 + L1PA7 LINE L1 3850 4367 -1779 371 320 36 21 chr4 144007816 144008010 -40280652 + L1ME LINE L1 3759 3955 -2191 1946 234 99 42 chr4 144008142 144008539 -40280123 + HAL1 LINE L1 1709 2082 -425 2105 141 0 0 chr4 144008539 144008844 -40279818 + AluSq SINE Alu 1 305 -8 1946 234 99 42 chr4 144008844 144009202 -40279460 + HAL1 LINE L1 2082 2507 0 648 282 70 19 chr4 144009228 144009540 -40279122 + L1ME LINE L1 5482 5809 -312 2045 150 57 26 chr4 144009593 144010012 -40278650 - MLT1C LTR MaLR 0 467 36 596 230 59 0 chr4 144010521 144010656 -40278006 + FLAM_C SINE Alu 1 143 0 2393 137 39 18 chr4 144010836 144011227 -40277435 + L1MB3 LINE L1 5738 6140 -43 1678 116 58 65 chr4 144011227 144011521 -40277141 + AluSq SINE Alu 1 292 -21 2393 137 39 18 chr4 144011521 144011566 -40277096 + L1MB3 LINE L1 6140 6183 0 550 278 22 43 chr4 144013264 144013483 -40275179 + Charlie7 DNA MER1_type 58 271 -2341 911 268 112 27 chr4 144013483 144013893 -40274769 - MLT1J1 LTR MaLR -1 445 1 1918 314 72 66 chr4 144013907 144014546 -40274116 + Charlie7 DNA MER1_type 289 922 -1690 1858 145 31 0 chr4 144014546 144014835 -40273827 + AluSx SINE Alu 1 298 -14 1918 314 72 66 chr4 144014835 144015374 -40273288 + Charlie7 DNA MER1_type 922 1478 -1134 3934 158 12 17 chr4 144015374 144016097 -40272565 + L1MB2 LINE L1 5447 6166 -5 1918 314 72 66 chr4 144016097 144016183 -40272479 + Charlie7 DNA MER1_type 1478 1562 -1050 1675 229 90 46 chr4 144016177 144016979 -40271683 + Charlie7 DNA MER1_type 1700 2536 -76 * 1656 251 82 37 chr4 144017676 144017983 -40270679 + MLT1H LTR MaLR 1 342 -207 2325 84 0 0 chr4 144017983 144018267 -40270395 + AluSp SINE Alu 1 284 -29 1656 251 82 37 chr4 144018267 144018469 -40270193 + MLT1H LTR MaLR 342 533 -16 316 359 140 25 chr4 144019008 144019193 -40269469 - L2 LINE L2 -396 2918 2756 2407 48 6 16 chr4 144019193 144019505 -40269157 + AluY SINE Alu 1 309 -2 316 359 140 25 chr4 144019505 144019848 -40268814 - L2 LINE L2 -558 2756 2329 979 235 67 29 chr4 144020667 144020982 -40267680 + MER102a DNA MER1_type 1 327 -3 327 310 80 0 chr4 144023682 144023782 -40264880 - L2 LINE L2 -2 3270 3163 192 97 0 0 chr4 144024149 144024180 -40264482 + (CAT)n Simple_repeat Simple_repeat 2 32 0 4361 120 15 39 chr4 144025320 144026039 -40262623 + MER50 LTR ERV1 1 702 -32 453 228 70 18 chr4 144026056 144026170 -40262492 + MIR SINE MIR 136 255 -7 508 291 16 24 chr4 144026943 144027188 -40261474 - L1ME3A LINE L1 -217 5961 5723 2037 119 7 0 chr4 144027227 144027524 -40261138 - AluSg SINE Alu 0 299 1 2041 132 7 3 chr4 144028027 144028322 -40260340 + AluSx SINE Alu 1 296 -16 1064 239 333 5 chr4 144028432 144028859 -40259803 + MER69 DNA AcHobo 2 568 -1958 * 1277 206 149 15 chr4 144028857 144029313 -40259349 + MER69 DNA AcHobo 2010 2526 0 841 217 21 26 chr4 144029728 144029917 -40258745 - MER5A DNA MER1_type -1 188 1 397 300 0 0 chr4 144030001 144030111 -40258551 + HERVL LTR ERVL 511 620 -5034 303 272 70 9 chr4 144030214 144030328 -40258334 + HERVL LTR ERVL 826 946 -4818 234 318 134 6 chr4 144030867 144031046 -40257616 + LTR67 LTR ERVL 356 557 0 604 267 141 21 chr4 144031049 144031758 -40256904 - L1ME3A LINE L1 -448 5673 4881 21 36 0 0 chr4 144031758 144031786 -40256876 + AT_rich Low_complexity Low_complexity 1 28 0 2210 180 104 16 chr4 144031786 144032209 -40256453 - L1MA9 LINE L1 -38 6274 5797 234 0 0 0 chr4 144032209 144032235 -40256427 + (TG)n Simple_repeat Simple_repeat 1 26 0 2210 180 104 16 chr4 144032235 144032321 -40256341 - L1MA9 LINE L1 -515 5797 5720 306 210 168 14 chr4 144032379 144032522 -40256140 - L1ME3A LINE L1 -1312 4834 4670 728 245 0 27 chr4 144032976 144033164 -40255498 - MIR SINE MIR -46 216 34 542 299 34 47 chr4 144033744 144033978 -40254684 - MLT1I LTR MaLR -107 302 72 964 223 20 3 chr4 144033978 144034248 -40254414 + MER89 LTR ERV1 2 375 -184 * 1898 246 56 42 chr4 144034244 144034838 -40253824 - LTR31 LTR ERV1 -15 604 3 1185 132 10 25 chr4 144034885 144035089 -40253573 + MER89 LTR ERV1 359 559 0 4831 45 0 6 chr4 144035525 144036386 -40252276 + L1P1 LINE L1 4807 5659 -496 3380 203 21 59 chr4 144036543 144037438 -40251224 + L1MC4a LINE L1 6948 7808 0 33 25 0 0 chr4 144037463 144037503 -40251159 + AT_rich Low_complexity Low_complexity 1 40 0 2233 110 0 13 chr4 144037504 144037814 -40250848 - AluSc SINE Alu -2 307 2 245 344 60 20 chr4 144038400 144038551 -40250111 - L2 LINE L2 -1021 2293 2137 1729 177 10 7 chr4 144039147 144039441 -40249221 - AluJb SINE Alu -11 301 7 2231 85 3 36 chr4 144039705 144040011 -40248651 - AluSq SINE Alu -17 296 1 889 224 103 33 chr4 144040824 144041222 -40247440 - LTR37A LTR ERV1 0 426 1 248 367 167 7 chr4 144042720 144042870 -40245792 - L2 LINE L2 -6 3266 3093 189 348 14 0 chr4 144043808 144043877 -40244785 + MIR3 SINE MIR 105 174 -34 216 0 0 0 chr4 144044692 144044716 -40243946 + (TTG)n Simple_repeat Simple_repeat 2 25 0 241 320 160 0 chr4 144044860 144044935 -40243727 + MIR3 SINE MIR 116 202 -6 230 237 79 0 chr4 144045432 144045508 -40243154 + L1 LINE L1 2 83 -7085 1900 232 33 7 chr4 144046427 144047153 -40241509 + L1 LINE L1 1631 2395 -4703 1402 239 14 14 chr4 144047143 144047512 -40241150 + L1 LINE L1 2628 2996 -4172 * 1739 130 20 37 chr4 144047550 144047895 -40240767 + MER61C LTR ERV1 2 434 0 3461 160 92 77 chr4 144047895 144048722 -40239940 + MER61C-int LTR ERV1 2 840 -4377 5044 82 1 6 chr4 144048722 144049409 -40239253 + MER61C-int LTR ERV1 958 1641 -3576 3407 107 66 22 chr4 144049398 144049988 -40238674 + MER61C-int LTR ERV1 1983 2598 -2619 * 672 265 83 117 chr4 144050315 144050775 -40237887 - MLT1J LTR MaLR -49 462 19 408 297 101 0 chr4 144050796 144050934 -40237728 + Charlie8 DNA MER1_type 96 247 -2170 2088 118 0 20 chr4 144050937 144051241 -40237421 - AluSx SINE Alu -8 304 7 348 204 97 0 chr4 144051429 144051522 -40237140 - MER53 DNA DNA -87 102 1 236 329 7 57 chr4 144051523 144051663 -40236999 - L2 LINE L2 -820 2494 2362 358 314 89 52 chr4 144051670 144052166 -40236496 - L2 LINE L2 -1074 2240 1727 2685 36 0 0 chr4 144053230 144053536 -40235126 - AluY SINE Alu -4 307 2 840 251 78 16 chr4 144053630 144053885 -40234777 + L2 LINE L2 3043 3313 0 2247 178 69 58 chr4 144054292 144054723 -40233939 + L1M4c LINE L1 15 455 -5929 2204 111 0 29 chr4 144054723 144055030 -40233632 - AluSx SINE Alu -14 298 1 2247 178 69 58 chr4 144055030 144055120 -40233542 + L1M4c LINE L1 455 542 -5842 * 3932 197 55 41 chr4 144055116 144055742 -40232920 + L1 LINE L1 4518 5167 -2000 2296 113 7 0 chr4 144055742 144056051 -40232611 + AluSx SINE Alu 1 311 -1 3932 197 55 41 chr4 144056051 144056495 -40232167 + L1 LINE L1 5167 5603 -1564 4662 176 53 15 chr4 144056512 144056807 -40231855 + L1MA3 LINE L1 3153 3435 -4130 906 103 0 0 chr4 144056807 144056943 -40231719 + (GGAA)n Simple_repeat Simple_repeat 3 138 0 4662 176 53 15 chr4 144056943 144058030 -40230632 + L1MA3 LINE L1 3435 4588 -2977 19942 205 37 5 chr4 144058216 144064268 -40224394 + L1P4 LINE L1 4 6267 -552 4817 101 0 11 chr4 144064268 144064968 -40223694 + L1PA13 LINE L1 5463 6155 -8 11425 160 21 2 chr4 144064969 144065468 -40223194 + L1MA3 LINE L1 4577 5065 -2659 1929 155 121 16 chr4 144065468 144065855 -40222807 - MSTA LTR MaLR 0 428 1 11425 160 21 2 chr4 144065855 144068443 -40220219 + L1MA3 LINE L1 5065 7724 0 180 0 0 0 chr4 144068448 144068468 -40220194 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 212 313 15 0 chr4 144069039 144069106 -40219556 + L3b LINE CR1 1294 1361 -222 27 29 0 0 chr4 144069425 144069459 -40219203 + AT_rich Low_complexity Low_complexity 1 34 0 347 306 39 37 chr4 144069651 144069993 -40218669 - L1MDa LINE L1 -4550 1579 1321 527 254 77 44 chr4 144070028 144070417 -40218245 - L1MDa LINE L1 -4893 1226 825 2242 119 140 8 chr4 144070581 144070959 -40217703 + MSTA LTR MaLR 1 428 0 1745 142 11 3 chr4 144070959 144071273 -40217389 + MSTA-int LTR MaLR 1 310 -1270 318 328 119 61 chr4 144071841 144072115 -40216547 - L1MDa LINE L1 -5654 465 160 2446 196 15 11 chr4 144072115 144072580 -40216082 - MLT1C LTR MaLR 0 467 1 318 328 119 61 chr4 144072580 144072701 -40215961 - L1MDa LINE L1 -5959 160 47 594 239 41 75 chr4 144072878 144072934 -40215728 + L1MEd LINE L1 908 964 -5155 2577 191 34 8 chr4 144072934 144073441 -40215221 + MLT2B1 LTR ERVL 1 520 0 594 239 41 75 chr4 144073441 144073702 -40214960 + L1MEd LINE L1 964 1214 -4905 24 32 0 0 chr4 144074021 144074052 -40214610 + AT_rich Low_complexity Low_complexity 1 31 0 21 71 0 0 chr4 144074164 144074206 -40214456 + AT_rich Low_complexity Low_complexity 1 42 0 1028 215 39 5 chr4 144075100 144075305 -40213357 - MER20 DNA MER1_type -5 214 3 4899 60 13 0 chr4 144075896 144076515 -40212147 + HERVL-A1 LTR ERVL 5028 5654 0 2951 96 18 29 chr4 144076515 144076964 -40211698 + MLT2A1 LTR ERVL 1 444 0 21 36 0 0 chr4 144077244 144077272 -40211390 + AT_rich Low_complexity Low_complexity 1 28 0 1348 155 24 73 chr4 144078078 144078516 -40210146 + MLT1D LTR MaLR 1 503 -2 22 35 0 0 chr4 144079323 144079352 -40209310 + AT_rich Low_complexity Low_complexity 1 29 0 1604 236 65 76 chr4 144079401 144079956 -40208706 + MLT1H LTR MaLR 1 549 0 2509 43 0 13 chr4 144080219 144080521 -40208141 + AluY SINE Alu 1 298 -13 2280 74 3 10 chr4 144080705 144081002 -40207660 + AluY SINE Alu 1 295 -16 262 360 0 0 chr4 144081113 144081213 -40207449 + L2 LINE L2 1344 1443 -1871 1533 178 129 9 chr4 144083705 144084031 -40204631 - MLT1A1 LTR MaLR 0 365 1 222 300 0 50 chr4 144084441 144084521 -40204141 - L2 LINE L2 0 3313 3238 355 347 106 44 chr4 144084755 144085161 -40203501 - L2 LINE L2 -497 2817 2387 1015 263 54 52 chr4 144085585 144085940 -40202722 - LTR40a LTR ERVL -33 486 128 1698 183 16 32 chr4 144085940 144086311 -40202351 - MLT1A1 LTR MaLR 0 365 1 1015 263 54 52 chr4 144086311 144086362 -40202300 - LTR40a LTR ERVL -391 128 79 876 319 104 34 chr4 144086423 144087166 -40201496 - L2 LINE L2 -932 2382 1588 1521 217 88 50 chr4 144087184 144087649 -40201013 - MLT1D LTR MaLR -2 503 21 602 194 208 7 chr4 144088930 144089074 -40199588 - MER5A DNA MER1_type -1 188 16 216 0 0 0 chr4 144089384 144089408 -40199254 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 180 0 0 0 chr4 144089722 144089742 -40198920 + (T)n Simple_repeat Simple_repeat 1 20 0 27 62 0 0 chr4 144090273 144090321 -40198341 + AT_rich Low_complexity Low_complexity 1 48 0 497 349 30 6 chr4 144091279 144091448 -40197214 + MER91A DNA MER1_type 1 173 -23 2363 96 0 3 chr4 144091601 144091914 -40196748 - AluSx SINE Alu 0 312 1 215 259 19 19 chr4 144091915 144091969 -40196693 + MER91A DNA MER1_type 143 196 0 716 307 110 10 chr4 144092763 144093072 -40195590 + MLT1I LTR MaLR 44 383 -26 1632 192 88 0 chr4 144093741 144094105 -40194557 - MSTD LTR MaLR 0 396 1 237 180 0 0 chr4 144094149 144094199 -40194463 + (TG)n Simple_repeat Simple_repeat 2 51 0 213 94 0 0 chr4 144094215 144094247 -40194415 + (GA)n Simple_repeat Simple_repeat 2 33 0 348 289 111 24 chr4 144094575 144094828 -40193834 + L1 LINE L1 4125 4399 -1747 7643 29 0 0 chr4 144094885 144095784 -40192878 - L1PA3 LINE L1 -3 6152 5254 7603 29 0 0 chr4 144094889 144096183 -40192479 - L1PA3 LINE L1 -7 6148 4855 1511 128 41 50 chr4 144096284 144096633 -40192029 + MER61C-int LTR ERV1 2892 5318 -945 27631 86 8 6 chr4 144096633 144101331 -40187331 - L1PA7 LINE L1 -1 6153 1447 5461 112 60 69 chr4 144101332 144101420 -40187242 + MER61C-int LTR ERV1 4239 4326 -891 2066 123 0 3 chr4 144101420 144101704 -40186958 - AluSg1 SINE Alu -26 283 1 5461 112 60 69 chr4 144101704 144102603 -40186059 + MER61C-int LTR ERV1 4326 5217 0 1549 167 13 54 chr4 144102603 144102957 -40185705 + MER61C LTR ERV1 1 431 -3 1047 145 0 124 chr4 144103082 144103316 -40185346 + AluJb SINE Alu 87 291 -21 5142 151 20 42 chr4 144103374 144104376 -40184286 + L1MA8 LINE L1 5290 6269 -22 7109 57 14 0 chr4 144104760 144106239 -40182423 + L1PA8 LINE L1 4679 6172 0 36 87 0 0 chr4 144107531 144107623 -40181039 + AT_rich Low_complexity Low_complexity 1 92 0 210 289 0 0 chr4 144108457 144108509 -40180153 + CT-rich Low_complexity Low_complexity 2 53 0 360 213 126 24 chr4 144109160 144109287 -40179375 + MIR SINE MIR 123 262 0 25 51 0 0 chr4 144109860 144109899 -40178763 + AT_rich Low_complexity Low_complexity 1 39 0 1187 285 118 51 chr4 144110340 144111025 -40177637 + L1ME3A LINE L1 1 731 -5388 204 310 116 47 chr4 144111712 144111841 -40176821 + L2 LINE L2 2476 2613 -701 222 197 16 66 chr4 144111847 144111908 -40176754 - L2 LINE L2 -5 3308 3251 215 362 17 26 chr4 144112053 144112169 -40176493 + L2 LINE L2 2736 2850 -464 4798 259 98 51 chr4 144112241 144113193 -40175469 + L1ME3A LINE L1 2173 3079 -3074 1942 170 6 3 chr4 144113193 144113540 -40175122 + L1PA16 LINE L1 5806 6153 -13 4798 259 98 51 chr4 144113540 144115469 -40173193 + L1ME3A LINE L1 3079 5264 -889 877 123 58 12 chr4 144115469 144115640 -40173022 - L1MA9 LINE L1 -1 6311 6133 4798 259 98 51 chr4 144115640 144116466 -40172196 + L1ME3A LINE L1 5264 6050 -103 33 0 0 0 chr4 144118480 144118513 -40170149 + AT_rich Low_complexity Low_complexity 1 33 0 1549 202 47 0 chr4 144118564 144118861 -40169801 + AluJo SINE Alu 1 311 -1 8606 122 21 1 chr4 144119123 144119712 -40168950 - L1PA11 LINE L1 -1 6173 5597 3734 73 18 0 chr4 144119712 144120216 -40168446 + LTR10D LTR ERV1 1 513 0 8606 122 21 1 chr4 144120216 144120537 -40168125 - L1PA11 LINE L1 -577 5597 5284 543 16 0 0 chr4 144120537 144120601 -40168061 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 8606 122 21 1 chr4 144120601 144121823 -40166839 - L1PA11 LINE L1 -890 5284 4004 1972 115 3 70 chr4 144121839 144122169 -40166493 - AluSg SINE Alu -2 308 1 501 240 116 0 chr4 144122180 144122309 -40166353 - MIR SINE MIR -14 248 105 470 270 93 77 chr4 144122312 144122676 -40165986 + MLT1L LTR MaLR 2 307 -204 2159 111 0 0 chr4 144122915 144123212 -40165450 + AluY SINE Alu 12 308 -3 191 374 91 10 chr4 144123216 144123315 -40165347 - L2 LINE L2 -12 3260 3154 1018 126 0 7 chr4 144123344 144123495 -40165167 + MER46A DNA MER2_type 1 150 -86 21 0 0 0 chr4 144123528 144123549 -40165113 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 144124914 144124935 -40163727 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr4 144125463 144125491 -40163171 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr4 144125563 144125593 -40163069 + AT_rich Low_complexity Low_complexity 1 30 0 5642 37 1 0 chr4 144125875 144126570 -40162092 - L1P LINE L1 -2096 4050 3355 7449 24 12 1 chr4 144126570 144127680 -40160982 + L1PA4 LINE L1 5030 6151 -4 187 263 13 53 chr4 144127803 144127879 -40160783 + L2 LINE L2 3177 3249 -64 1938 133 23 16 chr4 144127992 144128300 -40160362 - AluJo SINE Alu 0 312 3 2141 221 64 12 chr4 144128614 144129192 -40159470 - L1ME1 LINE L1 -4 6162 5555 5275 132 25 11 chr4 144129215 144130058 -40158604 + Tigger1 DNA MER2_type 30 884 -1534 3879 171 19 13 chr4 144130128 144130412 -40158250 + L1M3f LINE L1 16 297 -5031 2624 117 44 12 chr4 144130412 144130824 -40157838 - MSTB LTR MaLR -1 425 1 3879 171 19 13 chr4 144130824 144131227 -40157435 + L1M3f LINE L1 297 707 -4621 8772 132 45 21 chr4 144131235 144131300 -40157362 + Tigger1 DNA MER2_type 870 932 -1486 1357 126 50 22 chr4 144131300 144131399 -40157263 - MER30 DNA MER1_type 0 230 135 2324 76 7 10 chr4 144131399 144131701 -40156961 - AluY SINE Alu -10 301 1 1357 126 50 22 chr4 144131701 144131823 -40156839 - MER30 DNA MER1_type -95 135 3 8772 132 45 21 chr4 144131823 144133270 -40155392 + Tigger1 DNA MER2_type 932 2418 0 1199 231 26 0 chr4 144133271 144133573 -40155089 - L1ME1 LINE L1 -627 5539 5229 24 32 0 0 chr4 144134605 144134636 -40154026 + AT_rich Low_complexity Low_complexity 1 31 0 206 286 0 39 chr4 144135754 144135831 -40152831 - MIR SINE MIR 0 262 189 1210 283 22 40 chr4 144135965 144136410 -40152252 + L1M2 LINE L1 14 450 -6399 236 276 67 19 chr4 144136504 144136609 -40152053 + L1M2 LINE L1 662 771 -6078 19709 69 4 16 chr4 144136610 144139362 -40149300 + L1PA6 LINE L1 993 3709 -2437 7805 67 26 0 chr4 144139362 144141212 -40147450 + L1PA6 LINE L1 4291 6144 -10 462 65 0 0 chr4 144141229 144141291 -40147371 + (GGGA)n Simple_repeat Simple_repeat 3 64 0 189 0 0 0 chr4 144141298 144141319 -40147343 + (GAAAA)n Simple_repeat Simple_repeat 4 24 0 1236 150 39 13 chr4 144141321 144141555 -40147107 + L1MB2 LINE L1 5826 6065 -106 25 65 0 0 chr4 144142822 144142868 -40145794 + AT_rich Low_complexity Low_complexity 1 46 0 3725 131 16 36 chr4 144142888 144143529 -40145133 - L1PA15 LINE L1 -6 6159 5532 11287 186 22 59 chr4 144143534 144145145 -40143517 - L1PA15 LINE L1 -1161 4985 3419 575 184 0 0 chr4 144145145 144145243 -40143419 - AluSg/x SINE Alu -81 231 134 11287 186 22 59 chr4 144145243 144146306 -40142356 - L1PA15 LINE L1 -2727 3419 2318 254 200 143 0 chr4 144146369 144146439 -40142223 - L1PA15 LINE L1 -3839 2307 2228 297 91 0 0 chr4 144146609 144146653 -40142009 - MER116 DNA Mariner 0 80 37 212 333 115 30 chr4 144146714 144146948 -40141714 + L2 LINE L2 1890 2143 -1171 22257 54 0 1 chr4 144147109 144150859 -40137803 + L1PA5 LINE L1 2432 6151 -3 2027 123 7 18 chr4 144151077 144151417 -40137245 + AluSx SINE Alu 3 339 0 340 175 151 8 chr4 144152287 144152413 -40136249 - Charlie5 DNA MER1_type -72 2540 2397 343 284 55 20 chr4 144152452 144152615 -40136047 + L1MEc LINE L1 803 920 -5150 1342 263 63 31 chr4 144152624 144152875 -40135787 + L1M4 LINE L1 3387 3629 -2517 2068 152 120 11 chr4 144152875 144153257 -40135405 + MSTA LTR MaLR 1 424 -4 1342 263 63 31 chr4 144153257 144153609 -40135053 + L1M4 LINE L1 3629 4009 -2137 10516 202 22 35 chr4 144153635 144156056 -40132606 + L1PB1 LINE L1 6 2456 -4411 11206 40 6 1 chr4 144156056 144158190 -40130472 + L1PA5 LINE L1 4013 6149 -5 10516 202 22 35 chr4 144158190 144158416 -40130246 + L1PB1 LINE L1 2456 2683 -4184 2043 123 3 38 chr4 144158416 144158732 -40129930 + AluSx SINE Alu 1 305 -7 10516 202 22 35 chr4 144158732 144162712 -40125950 + L1PB1 LINE L1 2683 6853 -14 1014 47 0 0 chr4 144162819 144162946 -40125716 - L1PA5 LINE L1 -12 6142 6016 598 273 30 5 chr4 144162960 144163158 -40125504 + L1ME3A LINE L1 5736 5938 -232 249 398 0 10 chr4 144163270 144163373 -40125289 + L2 LINE L2 2782 2883 -431 5279 122 30 5 chr4 144163488 144164351 -40124311 - Tigger1 DNA MER2_type -58 2360 1476 5267 134 57 17 chr4 144164451 144165403 -40123259 - Tigger1 DNA MER2_type -1428 990 1 249 272 40 48 chr4 144165405 144165530 -40123132 + HAL1 LINE L1 358 481 -2026 703 269 56 46 chr4 144165796 144166101 -40122561 - L2 LINE L2 -8 3305 2998 2211 222 111 50 chr4 144166104 144166469 -40122193 + HAL1 LINE L1 735 1076 -1431 525 104 0 0 chr4 144166469 144166546 -40122116 + (TA)n Simple_repeat Simple_repeat 1 77 0 2401 112 0 0 chr4 144166549 144166861 -40121801 - AluSx SINE Alu 0 312 1 2211 222 111 50 chr4 144166861 144167534 -40121128 + HAL1 LINE L1 1077 1841 -666 394 216 10 10 chr4 144167534 144167636 -40121026 - LTR16B LTR ERVL -17 447 346 2741 110 32 16 chr4 144167647 144168084 -40120578 + MLT2A1 LTR ERVL 1 444 0 42034 68 11 3 chr4 144168086 144173698 -40114964 + HERVL-A1 LTR ERVL 3 5654 0 2627 103 20 8 chr4 144173698 144174097 -40114565 + MLT2A1 LTR ERVL 1 404 -40 297 0 0 0 chr4 144174102 144174135 -40114527 + (TG)n Simple_repeat Simple_repeat 2 34 0 329 71 18 18 chr4 144174214 144174270 -40114392 + MLT2A1 LTR ERVL 398 453 0 899 252 126 0 chr4 144174275 144174569 -40114093 - LTR16B LTR ERVL -130 334 4 2202 231 47 55 chr4 144174569 144174691 -40113971 + MLT2F LTR ERVL 1 123 -540 759 160 0 186 chr4 144174691 144174928 -40113734 + 7SK RNA RNA 1 193 0 2202 231 47 55 chr4 144174928 144175472 -40113190 + MLT2F LTR ERVL 123 661 -2 341 289 100 31 chr4 144175484 144175844 -40112818 + HAL1 LINE L1 1887 2271 -236 720 198 8 16 chr4 144176080 144176206 -40112456 - FLAM_A SINE Alu -8 125 1 471 100 0 0 chr4 144176553 144176623 -40112039 + (TG)n Simple_repeat Simple_repeat 2 71 0 1855 178 0 0 chr4 144177222 144177526 -40111136 + AluJb SINE Alu 1 304 -8 723 189 8 0 chr4 144177610 144177742 -40110920 + FLAM_C SINE Alu 1 133 0 2181 138 0 0 chr4 144177788 144178092 -40110570 + AluSx SINE Alu 1 304 -8 2197 124 13 3 chr4 144178100 144178407 -40110255 + AluSx SINE Alu 1 310 -2 308 179 15 15 chr4 144178479 144178546 -40110116 + HAL1 LINE L1 1447 1513 -994 243 0 0 0 chr4 144178569 144178596 -40110066 + (A)n Simple_repeat Simple_repeat 1 27 0 513 226 45 7 chr4 144178668 144178823 -40109839 + HAL1 LINE L1 1447 1607 -900 628 252 90 51 chr4 144179046 144179155 -40109507 - MIR SINE MIR 0 262 159 2125 126 0 3 chr4 144179155 144179449 -40109213 - AluSc SINE Alu -16 293 1 628 252 90 51 chr4 144179449 144179573 -40109089 - MIR SINE MIR -103 159 20 393 22 0 0 chr4 144179674 144179720 -40108942 + (TG)n Simple_repeat Simple_repeat 2 47 0 2202 88 10 7 chr4 144179720 144180003 -40108659 - AluSp SINE Alu -26 287 1 193 214 0 0 chr4 144180059 144180101 -40108561 - L2 LINE L2 -9 3263 3222 336 209 9 95 chr4 144180132 144180237 -40108425 - MIR SINE MIR -114 148 53 26 0 0 0 chr4 144184703 144184729 -40103933 + AT_rich Low_complexity Low_complexity 1 26 0 601 314 30 30 chr4 144184750 144184997 -40103665 - MIR SINE MIR -12 250 3 23 0 0 0 chr4 144186244 144186267 -40102395 + AT_rich Low_complexity Low_complexity 1 23 0 258 331 61 31 chr4 144186608 144186771 -40101891 - MIR SINE MIR -70 192 25 253 297 55 55 chr4 144187755 144187883 -40100779 - L2 LINE L2 -13 3259 3132 12912 147 45 29 chr4 144188492 144189136 -40099526 - Tigger1 DNA MER2_type 0 2418 1785 1549 177 0 19 chr4 144189136 144189407 -40099255 - AluJo SINE Alu -13 299 34 12912 147 45 29 chr4 144189407 144191143 -40097519 - Tigger1 DNA MER2_type -633 1785 1 1820 158 37 13 chr4 144191580 144191954 -40096708 + L1MA8 LINE L1 5906 6288 -3 1949 119 42 7 chr4 144192173 144192459 -40096203 + AluSg SINE Alu 1 296 -14 930 73 8 0 chr4 144193452 144193575 -40095087 + AluY SINE Alu 175 298 -13 632 160 0 8 chr4 144193606 144193731 -40094931 + (TG)n Simple_repeat Simple_repeat 2 125 0 2490 174 22 34 chr4 144194041 144194278 -40094384 + L1MB2 LINE L1 5593 5831 -340 2167 121 3 6 chr4 144194278 144194591 -40094071 + AluSx SINE Alu 1 312 0 2490 174 22 34 chr4 144194591 144194938 -40093724 + L1MB2 LINE L1 5831 6170 -1 4169 66 16 4 chr4 144195041 144195588 -40093074 + MER41A LTR ERV1 1 554 0 286 113 288 12 chr4 144195588 144195668 -40092994 + MER41A-int LTR ERV1 1 102 -5844 219 232 36 18 chr4 144195683 144195739 -40092923 - L2 LINE L2 -6 3307 3251 441 277 158 88 chr4 144196404 144196848 -40091814 + L2 LINE L2 2025 2499 -815 396 345 84 62 chr4 144197173 144197611 -40091051 + L2 LINE L2 2825 3272 0 1560 102 184 12 chr4 144200827 144201082 -40087580 + AluSg1 SINE Alu 1 299 -10 2016 148 3 3 chr4 144201326 144201629 -40087033 + AluSx SINE Alu 1 303 -9 3328 133 42 13 chr4 144201689 144202284 -40086378 + L1MA8 LINE L1 5660 6271 -20 1373 237 10 65 chr4 144202733 144203146 -40085516 + L1ME2 LINE L1 5765 6154 -10 556 245 77 5 chr4 144203188 144203384 -40085278 + L1MC4 LINE L1 7832 8041 -1 198 0 0 0 chr4 144204207 144204229 -40084433 + (TTTC)n Simple_repeat Simple_repeat 2 23 0 529 274 157 50 chr4 144204294 144204987 -40083675 + L1ME4a LINE L1 5355 6121 0 289 335 81 29 chr4 144205679 144205888 -40082774 - MIR SINE MIR -27 235 16 203 294 0 0 chr4 144206289 144206340 -40082322 - MIR SINE MIR 0 262 212 1143 238 42 72 chr4 144206786 144207198 -40081464 + MLT1J LTR MaLR 27 464 -47 384 289 8 16 chr4 144207242 144207363 -40081299 - MIR SINE MIR -109 153 34 2189 111 0 0 chr4 144207632 144207921 -40080741 + AluSc SINE Alu 1 289 -20 446 321 141 53 chr4 144208113 144208618 -40080044 + L1MEc LINE L1 74 622 -5774 1840 191 73 32 chr4 144208641 144209137 -40079525 + Charlie1b DNA MER1_type 8 523 0 749 264 2 0 chr4 144209145 144209323 -40079339 + MER58A DNA MER1_type 1 180 0 4235 173 56 9 chr4 144209323 144210127 -40078535 + L1MB4 LINE L1 5290 6138 -42 2172 125 3 0 chr4 144210127 144210431 -40078231 + AluSp SINE Alu 1 305 -8 4235 173 56 9 chr4 144210431 144210477 -40078185 + L1MB4 LINE L1 6138 6180 0 23 33 0 0 chr4 144210511 144210541 -40078121 + AT_rich Low_complexity Low_complexity 1 30 0 384 135 189 9 chr4 144210541 144210652 -40078010 + L1M4 LINE L1 3856 3986 -2160 511 266 124 35 chr4 144211709 144211901 -40076761 - Tigger8 DNA MER2_type -131 535 362 1717 172 21 7 chr4 144211901 144212192 -40076470 - AluJo SINE Alu -13 299 5 511 266 124 35 chr4 144212192 144212345 -40076317 - Tigger8 DNA MER2_type -304 362 159 22 0 0 0 chr4 144212663 144212685 -40075977 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr4 144213133 144213169 -40075493 + AT_rich Low_complexity Low_complexity 1 36 0 734 321 145 31 chr4 144213749 144214272 -40074390 - L3 LINE CR1 -132 1445 863 2845 281 7 24 chr4 144214440 144215177 -40073485 + L1PA15 LINE L1 1 724 -6063 * 4417 200 5 28 chr4 144215175 144215921 -40072741 + L1PA15 LINE L1 1347 2068 -4719 2431 84 0 0 chr4 144215921 144216231 -40072431 + AluY SINE Alu 2 311 0 4417 200 5 28 chr4 144216231 144216438 -40072224 + L1PA15 LINE L1 2068 2278 -4509 8451 188 23 26 chr4 144216438 144218835 -40069827 + L1PA15 LINE L1 4203 6589 -227 2344 105 0 0 chr4 144218835 144219140 -40069522 + AluSx SINE Alu 1 305 -7 8451 188 23 26 chr4 144219140 144219365 -40069297 + L1PA15 LINE L1 6589 6813 -3 617 273 37 32 chr4 144219370 144219557 -40069105 + MER58A DNA MER1_type 31 218 -6 2348 76 10 3 chr4 144219628 144219930 -40068732 + AluSp SINE Alu 1 304 -9 652 145 17 17 chr4 144219990 144220107 -40068555 + FLAM_C SINE Alu 1 117 -26 22 0 0 0 chr4 144220227 144220249 -40068413 + AT_rich Low_complexity Low_complexity 1 22 0 811 167 0 0 chr4 144220878 144221010 -40067652 - FLAM_C SINE Alu 0 133 2 2191 104 3 0 chr4 144221161 144221450 -40067212 - AluSp SINE Alu -23 290 1 252 219 59 50 chr4 144221992 144222111 -40066551 - L1MC4a LINE L1 -1834 5974 5855 275 279 13 0 chr4 144222162 144222241 -40066421 - MIR SINE MIR 0 262 183 765 232 137 14 chr4 144222275 144222559 -40066103 - L1MC4a LINE L1 -297 5824 5506 563 211 123 5 chr4 144222560 144222796 -40065866 + Charlie5 DNA MER1_type 58 2624 0 21 0 0 0 chr4 144222872 144222893 -40065769 + AT_rich Low_complexity Low_complexity 1 21 0 907 204 0 0 chr4 144222972 144223129 -40065533 - AluJb SINE Alu -12 300 144 1173 101 129 0 chr4 144223482 144223660 -40065002 + MER30 DNA MER1_type 1 201 -29 1046 149 189 29 chr4 144223709 144223984 -40064678 + MER33 DNA MER1_type 1 319 -5 1015 158 108 5 chr4 144224078 144224281 -40064381 + AluJo SINE Alu 84 307 -5 847 112 0 0 chr4 144224859 144224975 -40063687 - AluSg/x SINE Alu -6 303 188 1381 119 0 16 chr4 144225070 144225264 -40063398 - AluSq SINE Alu -122 191 1 622 212 135 29 chr4 144225436 144225606 -40063056 + MER5A DNA MER1_type 1 188 -1 845 149 28 145 chr4 144225615 144225863 -40062799 - MER20 DNA MER1_type 0 219 1 671 121 0 10 chr4 144226359 144226458 -40062204 - AluJb SINE Alu -13 299 202 537 204 76 23 chr4 144226554 144226686 -40061976 - MER3 DNA MER1_type -22 187 49 2170 134 0 3 chr4 144226766 144227072 -40061590 + AluSx SINE Alu 1 305 -7 1673 308 95 34 chr4 144227087 144228174 -40060488 + L2 LINE L2 1992 3147 -166 818 225 181 17 chr4 144229108 144229401 -40059261 + MER2 DNA MER2_type 4 344 0 202 362 58 43 chr4 144229403 144229541 -40059121 + L2 LINE L2 2966 3105 -167 588 227 46 79 chr4 144229585 144229801 -40058861 + MIR SINE MIR 54 262 0 230 314 0 0 chr4 144229832 144229883 -40058779 + L2 LINE L2 3143 3193 -79 2080 82 18 0 chr4 144230548 144230830 -40057832 - L1PA8A LINE L1 -358 5810 5524 431 111 0 0 chr4 144230827 144230890 -40057772 + L1PA8A LINE L1 5793 5855 -276 * 311 227 219 0 chr4 144230903 144231022 -40057640 + L1MCc LINE L1 781 925 -5498 2253 91 10 0 chr4 144231027 144231336 -40057326 + L1PA10 LINE L1 5853 6164 -4 2390 264 151 35 chr4 144231338 144232939 -40055723 + L1MCc LINE L1 51 1832 -4889 831 241 0 6 chr4 144232941 144233107 -40055555 - MLT1F LTR MaLR -376 166 2 1538 222 65 8 chr4 144233111 144233498 -40055164 + L1ME1 LINE L1 5753 6161 -5 280 296 43 27 chr4 144233741 144233927 -40054735 + HAL1b LINE L1 331 519 -829 3926 124 26 80 chr4 144234185 144234924 -40053738 + MER44D DNA MER2_type 1 699 -6 839 136 0 0 chr4 144235277 144235395 -40053267 + FLAM_C SINE Alu 1 118 -15 199 214 143 48 chr4 144235540 144235624 -40053038 + MIR3 SINE MIR 113 204 -4 753 156 0 8 chr4 144235725 144235847 -40052815 - FLAM_A SINE Alu -8 125 5 1713 145 37 7 chr4 144235932 144236228 -40052434 + AluJb SINE Alu 3 307 -5 201 208 42 0 chr4 144238164 144238212 -40050450 + L2 LINE L2 3262 3311 -2 666 188 47 13 chr4 144239202 144239351 -40049311 + FRAM SINE Alu 1 146 -30 269 212 204 62 chr4 144239872 144239985 -40048677 - L2 LINE L2 -2 3311 3183 3997 241 298 25 chr4 144240070 144242243 -40046419 - L2 LINE L2 -136 3177 381 23 0 0 0 chr4 144242244 144242267 -40046395 + AT_rich Low_complexity Low_complexity 1 23 0 931 171 13 0 chr4 144242769 144242921 -40045741 - AluJb SINE Alu -15 297 144 261 157 157 11 chr4 144243071 144243160 -40045502 - L1 LINE L1 -1676 4470 4369 25 51 0 0 chr4 144243808 144243847 -40044815 + AT_rich Low_complexity Low_complexity 1 39 0 186 294 0 82 chr4 144244048 144244133 -40044529 - L3 LINE CR1 -1 1576 1499 26 30 0 0 chr4 144244351 144244384 -40044278 + AT_rich Low_complexity Low_complexity 1 33 0 267 326 0 12 chr4 144245434 144245520 -40043142 - L2 LINE L2 -3 3269 3185 30 0 0 0 chr4 144245553 144245583 -40043079 + AT_rich Low_complexity Low_complexity 1 30 0 1001 218 16 33 chr4 144246589 144246832 -40041830 - MER8 DNA MER2_type 0 239 1 416 283 113 6 chr4 144247273 144247432 -40041230 + MER5B DNA MER1_type 3 178 0 24 53 0 0 chr4 144248321 144248359 -40040303 + AT_rich Low_complexity Low_complexity 1 38 0 2098 88 53 3 chr4 144249481 144249764 -40038898 - AluSp SINE Alu -16 297 1 2367 62 0 14 chr4 144250337 144250629 -40038033 - AluY SINE Alu -23 288 1 280 331 62 31 chr4 144251796 144251956 -40036706 - MIR SINE MIR -51 211 47 398 195 0 0 chr4 144252008 144252085 -40036577 + L1MEd LINE L1 82 158 -5961 621 310 135 55 chr4 144252121 144252647 -40036015 + L1MEd LINE L1 223 790 -5329 285 229 14 14 chr4 144252988 144253058 -40035604 + L1MEd LINE L1 1170 1239 -4880 524 202 116 10 chr4 144253353 144253551 -40035111 - MER20B DNA MER1_type -22 761 543 28 29 0 0 chr4 144254632 144254667 -40033995 + AT_rich Low_complexity Low_complexity 1 35 0 408 215 38 0 chr4 144254687 144254766 -40033896 - MER3 DNA MER1_type -126 83 2 208 147 0 0 chr4 144257236 144257270 -40031392 + (T)n Simple_repeat Simple_repeat 1 34 0 226 349 37 18 chr4 144257878 144257987 -40030675 + MIR3 SINE MIR 73 183 -25 26 50 0 0 chr4 144259787 144259827 -40028835 + AT_rich Low_complexity Low_complexity 1 40 0 2250 103 3 0 chr4 144260594 144260895 -40027767 + AluY SINE Alu 1 302 -9 528 176 7 74 chr4 144260924 144261072 -40027590 + L1M4 LINE L1 5154 5291 -855 279 169 138 0 chr4 144261092 144261157 -40027505 + L1M4 LINE L1 5802 5875 -299 1701 178 38 0 chr4 144261538 144261825 -40026837 + AluJb SINE Alu 1 298 -14 28 0 0 0 chr4 144262144 144262172 -40026490 + AT_rich Low_complexity Low_complexity 1 28 0 2043 137 3 10 chr4 144264187 144264494 -40024168 + AluSq SINE Alu 1 305 -8 442 259 161 5 chr4 144264528 144264721 -40023941 + HsTC2 DNA Tc2 62 284 -1614 1726 120 89 0 chr4 144264785 144265043 -40023619 + AluY SINE Alu 1 281 -30 255 225 113 0 chr4 144265104 144265184 -40023478 + HsTC2 DNA Tc2 1781 1869 -29 2032 115 0 11 chr4 144265304 144265591 -40023071 - AluSg1 SINE Alu -19 290 7 223 393 9 27 chr4 144265718 144265830 -40022832 + L2 LINE L2 3121 3230 -42 307 296 0 37 chr4 144267377 144267485 -40021177 + MER5B DNA MER1_type 74 177 -1 253 235 109 60 chr4 144267896 144268079 -40020583 - L1ME4a LINE L1 -22 6099 5908 2099 98 30 0 chr4 144268654 144268949 -40019713 - AluSx SINE Alu -8 304 1 182 291 194 19 chr4 144269119 144269222 -40019440 + L2 LINE L2 3151 3271 -1 216 309 62 12 chr4 144269431 144269512 -40019150 + MIR SINE MIR 142 226 -36 268 239 124 26 chr4 144269779 144269892 -40018770 - L1MEd LINE L1 -5345 774 651 301 266 32 21 chr4 144270386 144270480 -40018182 - L1MEd LINE L1 -5496 623 529 2150 102 7 10 chr4 144271002 144271296 -40017366 - AluSg SINE Alu -17 293 1 316 269 115 19 chr4 144272385 144272489 -40016173 + MIR SINE MIR 48 161 -101 327 281 68 7 chr4 144277914 144278070 -40010592 + MIR3 SINE MIR 25 197 -11 400 335 40 7 chr4 144278504 144278656 -40010006 - MIR SINE MIR -58 204 48 2208 101 0 13 chr4 144279886 144280192 -40008470 + AluY SINE Alu 1 302 -9 835 119 0 16 chr4 144281558 144281684 -40006978 - AluJb SINE Alu -183 129 6 282 29 0 0 chr4 144285458 144285493 -40003169 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2253 101 3 0 chr4 144287220 144287517 -40001145 + AluSq SINE Alu 1 298 -15 2032 210 33 9 chr4 144288001 144288453 -40000209 + MLT1C LTR MaLR 1 463 -4 823 81 0 0 chr4 144288541 144288652 -40000010 - HY1 scRNA scRNA -1 111 1 363 308 77 87 chr4 144288670 144288982 -39999680 + L1MEd LINE L1 102 410 -5709 2136 124 0 3 chr4 144290356 144290654 -39998008 + AluSg SINE Alu 1 297 -13 1978 126 39 3 chr4 144291127 144291413 -39997249 - AluSc SINE Alu -13 296 1 2053 113 0 56 chr4 144291718 144292037 -39996625 - AluSx SINE Alu -11 301 1 606 292 39 26 chr4 144292280 144292513 -39996149 + MIR SINE MIR 15 250 -12 905 175 31 57 chr4 144293648 144293842 -39994820 - MER20 DNA MER1_type -1 218 30 205 264 0 0 chr4 144295136 144295189 -39993473 + (TATATG)n Simple_repeat Simple_repeat 3 55 0 2289 91 3 0 chr4 144295404 144295700 -39992962 + AluSp SINE Alu 1 297 -16 583 234 75 57 chr4 144295781 144295835 -39992827 - L2 LINE L2 0 3313 3261 1202 194 30 21 chr4 144295835 144296072 -39992590 - MER8 DNA MER2_type 0 239 1 583 234 75 57 chr4 144296072 144296244 -39992418 - L2 LINE L2 -52 3261 3083 965 116 67 18 chr4 144296245 144296409 -39992253 + THE1C LTR MaLR 1 172 -203 2333 80 17 0 chr4 144296413 144296714 -39991948 + AluSp SINE Alu 5 310 -3 2202 73 11 0 chr4 144297207 144297481 -39991181 + AluY SINE Alu 1 277 -34 285 51 0 0 chr4 144297486 144297525 -39991137 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 23 33 0 0 chr4 144297543 144297573 -39991089 + AT_rich Low_complexity Low_complexity 1 30 0 366 271 162 39 chr4 144297743 144297972 -39990690 - MIR SINE MIR -2 260 4 310 268 187 8 chr4 144298966 144299089 -39989573 - MIR SINE MIR -27 235 91 341 242 184 38 chr4 144299144 144299277 -39989385 + MIR3 SINE MIR 3 165 -43 2077 132 0 0 chr4 144299534 144299822 -39988840 + AluSx SINE Alu 1 288 -24 2000 133 0 7 chr4 144299829 144300147 -39988515 + AluSx SINE Alu 1 316 0 872 235 17 0 chr4 144300606 144300785 -39987877 + MER20 DNA MER1_type 32 213 -6 1057 152 0 0 chr4 144300991 144301142 -39987520 - FRAM SINE Alu -27 149 1 2439 62 7 3 chr4 144301275 144301583 -39987079 + AluY SINE Alu 1 309 -2 21 0 0 0 chr4 144301961 144301982 -39986680 + AT_rich Low_complexity Low_complexity 1 21 0 2305 89 7 7 chr4 144302707 144303010 -39985652 - AluSp SINE Alu -10 303 1 304 230 95 0 chr4 144303288 144303362 -39985300 - L2 LINE L2 -2 3311 3231 23 54 0 0 chr4 144303413 144303450 -39985212 + AT_rich Low_complexity Low_complexity 1 37 0 1545 143 4 8 chr4 144303580 144303817 -39984845 + MER46A DNA MER2_type 1 236 0 2345 82 7 0 chr4 144304485 144304778 -39983884 - AluSp SINE Alu -18 295 1 1283 101 0 6 chr4 144304928 144305096 -39983566 - AluSg/x SINE Alu -12 298 132 2129 125 0 16 chr4 144305096 144305261 -39983401 - AluSx SINE Alu -14 298 139 2350 104 0 0 chr4 144305261 144305558 -39983104 - AluSg SINE Alu -13 297 1 2129 125 0 16 chr4 144305558 144305695 -39982967 - AluSx SINE Alu -173 139 1 2748 203 57 79 chr4 144305753 144305913 -39982749 - L1ME1 LINE L1 -9 6157 5995 366 61 0 0 chr4 144305913 144305962 -39982700 + (CA)n Simple_repeat Simple_repeat 1 49 0 2748 203 57 79 chr4 144305962 144306026 -39982636 - L1ME1 LINE L1 -171 5995 5931 2380 93 3 3 chr4 144306026 144306337 -39982325 - AluY SINE Alu 0 311 1 2748 203 57 79 chr4 144306337 144306802 -39981860 - L1ME1 LINE L1 -235 5931 5486 2225 76 0 28 chr4 144306802 144307092 -39981570 - AluY SINE Alu -13 298 17 2748 203 57 79 chr4 144307092 144307236 -39981426 - L1ME1 LINE L1 -680 5486 5340 2518 246 45 10 chr4 144307253 144307878 -39980784 - L1MEc LINE L1 -5715 681 35 2086 149 0 0 chr4 144307955 144308263 -39980399 - AluSx SINE Alu -4 308 1 2016 105 0 44 chr4 144308277 144308479 -39980183 - AluSg SINE Alu 0 306 121 2269 79 48 0 chr4 144308479 144308770 -39979892 - AluY SINE Alu -6 305 1 2016 105 0 44 chr4 144308770 144308886 -39979776 - AluSg SINE Alu -185 121 1 2094 207 27 23 chr4 144308969 144309256 -39979406 + L1ME4a LINE L1 4245 4536 -1610 2158 126 0 0 chr4 144309256 144309550 -39979112 - AluSg SINE Alu -16 294 1 2094 207 27 23 chr4 144309550 144309775 -39978887 + L1ME4a LINE L1 4536 4759 -1387 558 150 0 0 chr4 144309775 144309855 -39978807 + AluSx SINE Alu 3 82 -230 1584 97 0 55 chr4 144309955 144310192 -39978470 + AluSx SINE Alu 70 293 -19 2353 65 3 37 chr4 144315329 144315652 -39973010 + AluSp SINE Alu 1 312 -1 1920 195 95 68 chr4 144316457 144316985 -39971677 + MLT1F LTR MaLR 1 542 0 688 257 117 74 chr4 144317311 144317564 -39971098 + MLT1J LTR MaLR 3 244 -267 1981 106 64 0 chr4 144317564 144317847 -39970815 + AluSx SINE Alu 1 301 -11 688 257 117 74 chr4 144317847 144317872 -39970790 + MLT1J LTR MaLR 244 266 -245 2214 99 0 13 chr4 144317872 144318174 -39970488 + AluSg SINE Alu 2 299 -11 688 257 117 74 chr4 144318174 144318314 -39970348 + MLT1J LTR MaLR 266 440 -71 525 262 76 70 chr4 144318578 144318806 -39969856 + L1ME4a LINE L1 5555 5789 -332 1894 132 7 7 chr4 144318806 144319094 -39969568 + AluSg SINE Alu 1 288 -22 525 262 76 70 chr4 144319094 144319311 -39969351 + L1ME4a LINE L1 5789 6003 -118 2240 111 0 10 chr4 144319822 144320128 -39968534 + AluSq SINE Alu 2 304 -9 24 0 0 0 chr4 144320258 144320282 -39968380 + AT_rich Low_complexity Low_complexity 1 24 0 282 193 35 0 chr4 144320442 144320499 -39968163 + L1ME1 LINE L1 5147 5205 -941 1042 147 0 0 chr4 144320499 144320656 -39968006 + AluSg/x SINE Alu 154 310 0 2824 223 68 10 chr4 144320673 144321547 -39967115 + L1ME1 LINE L1 5188 6157 -9 1865 134 53 7 chr4 144321735 144322018 -39966644 - AluSx SINE Alu -16 296 1 414 296 117 11 chr4 144322134 144322313 -39966349 - L2 LINE L2 -64 3249 3052 276 252 48 39 chr4 144322354 144322457 -39966205 + MER5A DNA MER1_type 64 167 -22 * 444 254 33 16 chr4 144322366 144322488 -39966174 - MER5A DNA MER1_type -63 126 3 200 244 37 85 chr4 144322844 144322926 -39965736 + L2 LINE L2 3212 3289 -24 2098 112 38 0 chr4 144323299 144323586 -39965076 + AluSc SINE Alu 1 298 -11 296 364 66 21 chr4 144325091 144325333 -39963329 - L3 LINE CR1 -3 1574 1322 2343 71 0 10 chr4 144325356 144325652 -39963010 + AluY SINE Alu 1 293 -18 266 219 110 14 chr4 144325652 144325725 -39962937 + MIR SINE MIR 175 254 -8 1521 141 134 0 chr4 144326253 144326515 -39962147 - AluSg SINE Alu -11 299 3 2147 117 0 10 chr4 144327792 144328092 -39960570 - AluSg SINE Alu -13 297 1 929 85 25 176 chr4 144328154 144328353 -39960309 - AluSp SINE Alu -54 259 91 1704 143 59 11 chr4 144328563 144328850 -39959812 - AluJb SINE Alu -11 301 1 225 172 10 162 chr4 144329118 144329217 -39959445 + L2 LINE L2 2077 2160 -1154 206 167 0 48 chr4 144330087 144330129 -39958533 + GA-rich Low_complexity Low_complexity 3 42 0 347 273 45 9 chr4 144331230 144331340 -39957322 + L1MC5 LINE L1 7817 7930 -31 2109 148 0 0 chr4 144331372 144331682 -39956980 + AluSx SINE Alu 1 310 -2 276 251 0 39 chr4 144331685 144331779 -39956883 + MER5B DNA MER1_type 83 162 -16 27 0 0 0 chr4 144331833 144331860 -39956802 + AT_rich Low_complexity Low_complexity 1 27 0 3654 158 68 33 chr4 144332265 144333014 -39955648 + L1MB7 LINE L1 5410 6184 0 1922 140 0 14 chr4 144333027 144333319 -39955343 + AluSx SINE Alu 1 288 -24 21 95 0 0 chr4 144333319 144333382 -39955280 + AT_rich Low_complexity Low_complexity 1 63 0 1453 138 189 50 chr4 144333394 144333691 -39954971 - MER44D DNA MER2_type -1 608 1 2212 120 0 0 chr4 144334221 144334522 -39954140 + AluSx SINE Alu 1 301 -11 1590 205 143 35 chr4 144334712 144335195 -39953467 - LTR10A LTR ERV1 -61 548 14 677 267 80 65 chr4 144335591 144336134 -39952528 + LTR50 LTR ERVL 11 523 0 2350 100 3 0 chr4 144336607 144336918 -39951744 - AluSp SINE Alu -1 312 1 2239 110 3 7 chr4 144336921 144337229 -39951433 - AluSp SINE Alu -6 307 1 817 198 123 42 chr4 144337397 144337609 -39951053 + LTR41 LTR ERVL 1 229 -544 635 256 191 27 chr4 144337658 144337917 -39950745 + LTR41 LTR ERVL 348 649 -124 4357 98 41 5 chr4 144337917 144338529 -39950133 - MER4A LTR ERV1 0 664 31 263 268 0 0 chr4 144338681 144338752 -39949910 + MLT1K LTR MaLR 495 565 -23 1231 185 125 34 chr4 144339139 144339436 -39949226 + MER2 DNA MER2_type 22 345 0 2554 56 20 0 chr4 144340204 144340509 -39948153 - AluY SINE Alu 0 311 1 2595 38 3 0 chr4 144342168 144342461 -39946201 + AluY SINE Alu 1 294 -17 775 238 117 86 chr4 144342482 144342877 -39945785 + L1MC4a LINE L1 5530 5936 -1872 276 351 97 0 chr4 144343234 144343368 -39945294 - MIR SINE MIR 0 262 116 524 229 72 18 chr4 144344438 144344604 -39944058 - LTR33A LTR ERVL -1 522 348 522 283 20 40 chr4 144344624 144344776 -39943886 - LTR33A LTR ERVL -364 159 11 2643 112 22 6 chr4 144344814 144345172 -39943490 - THE1B LTR MaLR 0 364 1 2354 295 87 19 chr4 144345514 144346679 -39941983 - ERVL LTR ERVL -355 5130 4068 2324 307 52 55 chr4 144346737 144347130 -39941532 - ERVL LTR ERVL -3552 2212 1820 2264 125 0 0 chr4 144347130 144347441 -39941221 + AluSq SINE Alu 1 311 -2 2324 307 52 55 chr4 144347441 144348221 -39940441 - ERVL LTR ERVL -3944 1820 1040 2353 105 3 0 chr4 144348221 144348527 -39940135 + AluSq SINE Alu 1 307 -6 2324 307 52 55 chr4 144348527 144348688 -39939974 - ERVL LTR ERVL -4724 1040 880 2480 54 0 25 chr4 144349943 144350260 -39938402 - AluY SINE Alu -2 309 1 579 311 41 24 chr4 144350269 144350680 -39937982 - HAL1 LINE L1 -975 1532 1115 382 292 148 34 chr4 144351043 144351279 -39937383 + MLT1H LTR MaLR 24 286 -263 475 262 190 36 chr4 144351464 144351633 -39937029 + L2 LINE L2 2766 2908 -405 2452 143 41 7 chr4 144351633 144352045 -39936617 + MSTB LTR MaLR 1 426 0 475 262 190 36 chr4 144352045 144352277 -39936385 + L2 LINE L2 2908 3243 -70 1863 207 141 47 chr4 144352278 144352858 -39935804 - LTR27 LTR ERV1 0 636 2 849 185 0 26 chr4 144352945 144353096 -39935566 - FAM SINE Alu -23 162 16 21 71 0 0 chr4 144353344 144353386 -39935276 + AT_rich Low_complexity Low_complexity 1 42 0 601 299 58 17 chr4 144353669 144353775 -39934887 - L1ME4a LINE L1 -272 5849 5749 2178 113 0 31 chr4 144353775 144354095 -39934567 - AluSg SINE Alu 0 310 1 601 299 58 17 chr4 144354095 144354333 -39934329 - L1ME4a LINE L1 -372 5749 5491 2594 119 35 26 chr4 144354335 144354796 -39933866 - L1MB3 LINE L1 -1 6182 5718 251 254 88 119 chr4 144356215 144356408 -39932254 - MIR SINE MIR -18 244 58 377 171 137 17 chr4 144356653 144356770 -39931892 - LTR55 LTR ERV 0 548 418 1472 146 38 56 chr4 144356826 144357114 -39931548 - LTR55 LTR ERV -265 283 1 230 135 0 27 chr4 144357320 144357357 -39931305 - U6 snRNA snRNA -71 36 1 211 306 0 61 chr4 144358165 144358263 -39930399 - MIR SINE MIR -49 213 122 6244 178 39 30 chr4 144358431 144359858 -39928804 + L1 LINE L1 3842 5280 -866 1155 230 0 21 chr4 144409859 144410098 -39878564 + AluJo SINE Alu 55 288 -24 2233 98 0 0 chr4 144410106 144410392 -39878270 + AluSg SINE Alu 1 286 -24 349 307 201 11 chr4 144410550 144410739 -39877923 - MIR SINE MIR -13 249 25 350 354 95 6 chr4 144410785 144410943 -39877719 - MIR3 SINE MIR -3 205 34 689 178 304 16 chr4 144411098 144411345 -39877317 - MLT1F1 LTR MaLR -29 538 221 316 129 29 43 chr4 144411350 144411420 -39877242 - MLT1F1 LTR MaLR -494 73 5 3735 137 65 6 chr4 144411629 144412418 -39876244 + MER4D LTR ERV1 1 896 -7 752 285 11 25 chr4 144412465 144412739 -39875923 + MLT1L LTR MaLR 331 600 -15 267 255 38 78 chr4 144415049 144415209 -39873453 + MER5A DNA MER1_type 1 165 -24 771 213 101 5 chr4 144415450 144415638 -39873024 + MIR SINE MIR 12 217 -45 1361 179 11 15 chr4 144415641 144415957 -39872705 + MER61B LTR ERV1 1 400 -25 202 171 0 0 chr4 144415983 144416018 -39872644 + MIR SINE MIR 218 252 -10 202 276 17 0 chr4 144417584 144417642 -39871020 - MIR SINE MIR -8 254 196 22 0 0 0 chr4 144417750 144417772 -39870890 + AT_rich Low_complexity Low_complexity 1 22 0 22 103 0 0 chr4 144417885 144417963 -39870699 + AT_rich Low_complexity Low_complexity 1 78 0 3021 209 68 20 chr4 144418309 144419280 -39869382 + L1MCa LINE L1 1 948 -5097 1932 153 20 10 chr4 144419984 144420304 -39868358 + AluSg SINE Alu 1 310 0 603 291 56 0 chr4 144421021 144421217 -39867445 - MIR SINE MIR 0 262 56 249 108 0 0 chr4 144421305 144421342 -39867320 + (T)n Simple_repeat Simple_repeat 1 37 0 25 65 0 0 chr4 144421422 144421468 -39867194 + GC_rich Low_complexity Low_complexity 1 46 0 236 186 182 0 chr4 144423711 144423792 -39864870 + MIR SINE MIR 28 134 -74 2041 137 28 19 chr4 144423920 144424279 -39864383 + THE1C LTR MaLR 14 375 0 298 276 114 29 chr4 144424342 144424447 -39864215 - MER5A DNA MER1_type -7 182 69 261 365 50 17 chr4 144424859 144425021 -39863641 - L2 LINE L2 -8 3305 3135 1878 163 0 3 chr4 144425021 144425315 -39863347 + AluSx SINE Alu 1 293 -19 261 365 50 17 chr4 144425315 144425333 -39863329 - L2 LINE L2 -178 3135 3119 190 240 80 40 chr4 144425831 144425906 -39862756 - MIR SINE MIR -101 161 84 218 228 70 0 chr4 144426050 144426107 -39862555 + MIR SINE MIR 104 164 -98 3218 143 17 22 chr4 144426364 144426967 -39861695 + L1MB3 LINE L1 5593 6192 0 260 267 133 0 chr4 144427061 144427151 -39861511 + MIR SINE MIR 88 189 -73 347 107 0 54 chr4 144428460 144428516 -39860146 - AluJo SINE Alu -132 170 118 1053 98 0 0 chr4 144428532 144428665 -39859997 - AluSq/x SINE Alu -179 133 1 1898 135 0 7 chr4 144428666 144428963 -39859699 + MER1A DNA MER1_type 235 529 0 24 0 0 0 chr4 144429076 144429100 -39859562 + AT_rich Low_complexity Low_complexity 1 24 0 2422 207 19 42 chr4 144429113 144429450 -39859212 + L1MC3 LINE L1 2700 3043 -3103 1840 181 10 0 chr4 144429450 144429759 -39858903 + AluJb SINE Alu 1 312 0 2422 207 19 42 chr4 144429759 144430207 -39858455 + L1MC3 LINE L1 3043 3467 -2679 186 118 0 0 chr4 144430266 144430300 -39858362 + (GA)n Simple_repeat Simple_repeat 1 34 0 999 224 56 36 chr4 144430300 144430709 -39857953 - MLT2D LTR ERVL -48 416 1 2973 222 29 15 chr4 144430711 144431513 -39857149 + L1MC3 LINE L1 3464 4276 -1870 2187 136 7 0 chr4 144431556 144431858 -39856804 + AluSx SINE Alu 1 304 -8 5797 95 21 3 chr4 144431886 144432738 -39855924 + L1MA3 LINE L1 5436 6302 -3 10555 179 48 23 chr4 144432755 144435166 -39853496 + L1MC3 LINE L1 5319 6344 0 14235 120 11 7 chr4 144436071 144438143 -39850519 + Tigger1 DNA MER2_type 1 2083 -335 2249 115 0 3 chr4 144438143 144438447 -39850215 + AluSq SINE Alu 1 303 -10 14235 120 11 7 chr4 144438447 144438622 -39850040 + Tigger1 DNA MER2_type 2083 2256 -162 780 110 0 0 chr4 144438629 144438747 -39849915 - L1PB1 LINE L1 0 6151 6034 257 170 0 0 chr4 144438814 144438861 -39849801 + MER21A LTR ERV1 25 71 -860 532 101 38 0 chr4 144438890 144438969 -39849693 + MER21A LTR ERV1 833 914 -17 693 164 90 15 chr4 144438984 144439118 -39849544 + Tigger1 DNA MER2_type 2275 2418 0 900 133 6 63 chr4 144439398 144439556 -39849106 + AluJb SINE Alu 158 306 -6 373 283 43 29 chr4 144439585 144439723 -39848939 - L2 LINE L2 0 3313 3174 261 335 103 8 chr4 144439903 144440035 -39848627 - MIR SINE MIR -58 150 5 27467 39 4 3 chr4 144440274 144444593 -39844069 - L1PA4 LINE L1 0 6155 1832 40612 32 22 1 chr4 144444610 144450591 -39838071 + L1PA2 LINE L1 49 6155 0 315 0 0 0 chr4 144453178 144453213 -39835449 + (CA)n Simple_repeat Simple_repeat 2 36 0 13935 59 4 0 chr4 144453213 144455047 -39833615 - L1PA4 LINE L1 -4304 1842 1 23 0 0 0 chr4 144455694 144455717 -39832945 + AT_rich Low_complexity Low_complexity 1 23 0 302 278 358 0 chr4 144456241 144456403 -39832259 + MIR SINE MIR 38 257 -5 1381 172 8 0 chr4 144456438 144456676 -39831986 - Tigger4(Zombi) DNA MER2_type -2491 240 1 347 120 93 13 chr4 144456699 144456774 -39831888 + Tigger4(Zombi) DNA MER2_type 338 418 -2313 323 183 0 0 chr4 144456815 144456875 -39831787 + Tigger4(Zombi) DNA MER2_type 2668 2727 -4 356 240 90 70 chr4 144457403 144457715 -39830947 - HAL1b LINE L1 -58 1290 973 1426 298 28 16 chr4 144457742 144458319 -39830343 + L1MEc LINE L1 36 619 -5777 281 214 107 21 chr4 144458510 144458650 -39830012 - HAL1b LINE L1 -1108 240 89 1525 169 46 113 chr4 144458676 144458989 -39829673 - MLT1B LTR MaLR -2 388 123 738 126 0 0 chr4 144458989 144459100 -39829562 - L1PA16 LINE L1 -13 6153 6043 1525 169 46 113 chr4 144459100 144459216 -39829446 - MLT1B LTR MaLR -267 123 1 2256 105 0 3 chr4 144459637 144459932 -39828730 - AluSg SINE Alu -16 294 1 405 0 0 0 chr4 144461128 144461173 -39827489 + (TG)n Simple_repeat Simple_repeat 1 45 0 213 39 0 0 chr4 144461172 144461198 -39827464 + (CG)n Simple_repeat Simple_repeat 2 27 0 * 5575 213 70 40 chr4 144461696 144463644 -39825018 - L1MDa LINE L1 -4384 2156 38 2018 148 28 48 chr4 144463901 144464334 -39824328 - Tigger2a DNA MER2_type -2 432 9 840 207 89 10 chr4 144464534 144464737 -39823925 - MER20 DNA MER1_type 0 219 1 22 0 0 0 chr4 144465842 144465864 -39822798 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 144466039 144466069 -39822593 + AT_rich Low_complexity Low_complexity 1 30 0 223 323 56 45 chr4 144466401 144466599 -39822063 + L2 LINE L2 2836 3035 -237 210 238 0 0 chr4 144466977 144467019 -39821643 - MIR SINE MIR -173 89 48 234 91 0 0 chr4 144467140 144467173 -39821489 + (A)n Simple_repeat Simple_repeat 1 33 0 311 65 22 0 chr4 144467741 144467787 -39820875 + (GGAA)n Simple_repeat Simple_repeat 1 47 0 925 323 10 3 chr4 144467788 144468088 -39820574 - LTR16B LTR ERVL -155 309 8 198 0 0 0 chr4 144468168 144468190 -39820472 + (CA)n Simple_repeat Simple_repeat 2 23 0 816 264 161 55 chr4 144468191 144468718 -39819944 + HAL1 LINE L1 117 763 -1744 1443 128 35 23 chr4 144468718 144468976 -39819686 + L1PA13 LINE L1 5902 6162 -1 816 264 161 55 chr4 144468976 144469267 -39819395 + HAL1 LINE L1 763 1022 -1485 1758 167 19 115 chr4 144469279 144469741 -39818921 - MER47B DNA MER2_type 0 418 1 972 173 49 16 chr4 144469812 144469997 -39818665 + AluJb SINE Alu 121 311 -1 22 35 0 0 chr4 144470070 144470099 -39818563 + AT_rich Low_complexity Low_complexity 1 29 0 242 93 23 0 chr4 144470104 144470147 -39818515 - MADE1 DNA Mariner 0 80 37 1750 242 94 63 chr4 144470152 144471213 -39817449 + HAL1 LINE L1 1329 2422 -85 373 319 26 21 chr4 144471283 144471474 -39817188 + HAL1b LINE L1 413 604 -744 449 322 84 19 chr4 144471496 144471710 -39816952 + HAL1b LINE L1 658 885 -463 30 0 0 0 chr4 144472067 144472097 -39816565 + AT_rich Low_complexity Low_complexity 1 30 0 564 322 111 10 chr4 144472379 144472587 -39816075 + MIR SINE MIR 34 262 0 395 273 71 32 chr4 144472841 144473094 -39815568 + L1M4 LINE L1 3520 3782 -2364 1068 305 94 58 chr4 144473108 144473629 -39815033 + L1M4 LINE L1 3831 4332 -1814 2872 181 85 42 chr4 144473629 144474384 -39814278 + LTR48 LTR ERV1 1 787 0 1068 305 94 58 chr4 144474384 144474433 -39814229 + L1M4 LINE L1 4332 4378 -1768 2337 107 0 0 chr4 144474433 144474732 -39813930 - AluSg SINE Alu -11 299 1 1068 305 94 58 chr4 144474732 144474924 -39813738 + L1M4 LINE L1 4378 4562 -1584 2911 6 0 0 chr4 144474924 144475238 -39813424 + AluYb8 SINE Alu 1 314 -4 1068 305 94 58 chr4 144475238 144475366 -39813296 + L1M4 LINE L1 4562 4684 -1462 649 240 0 0 chr4 144475366 144475491 -39813171 + FLAM_A SINE Alu 1 125 -8 1068 305 94 58 chr4 144475491 144475622 -39813040 + L1M4 LINE L1 4684 4892 -1254 489 183 32 0 chr4 144475637 144475730 -39812932 + MLT1D LTR MaLR 1 96 -409 4123 140 13 13 chr4 144475742 144476440 -39812222 - L1MB3 LINE L1 -2 6181 5484 648 195 0 0 chr4 144476491 144476619 -39812043 + MLT1D LTR MaLR 377 504 -1 16267 71 4 7 chr4 144476620 144478924 -39809738 - L1P LINE L1 -2524 3622 1325 10099 68 9 0 chr4 144478925 144481023 -39807639 + L1PA6 LINE L1 4033 6143 -11 304 202 149 0 chr4 144481031 144481125 -39807537 + L1ME LINE L1 5716 5823 -298 26 30 0 0 chr4 144481478 144481511 -39807151 + AT_rich Low_complexity Low_complexity 1 33 0 490 296 82 7 chr4 144481687 144481822 -39806840 + L2 LINE L2 3128 3272 0 490 204 19 0 chr4 144482412 144482531 -39806131 + MLT1J2 LTR MaLR 7 128 -319 24 32 0 0 chr4 144482673 144482704 -39805958 + AT_rich Low_complexity Low_complexity 1 31 0 619 262 97 44 chr4 144483686 144484098 -39804564 - L1ME4a LINE L1 -113 6008 5575 375 147 0 0 chr4 144484869 144484937 -39803725 + AluJ/FLAM SINE Alu 1 68 -234 1643 131 0 0 chr4 144484980 144485209 -39803453 + AluSg/x SINE Alu 69 297 -15 426 317 93 27 chr4 144485397 144485697 -39802965 - L1ME4a LINE L1 -199 5922 5603 188 333 0 0 chr4 144486001 144486058 -39802604 + L2 LINE L2 3257 3313 0 184 188 31 0 chr4 144486096 144486128 -39802534 + MIR SINE MIR 50 82 -180 2338 81 0 19 chr4 144486324 144486631 -39802031 - AluY SINE Alu -10 301 1 335 111 0 0 chr4 144487620 144487674 -39800988 - MLT2B1 LTR ERVL -6 514 461 22 0 0 0 chr4 144487757 144487779 -39800883 + AT_rich Low_complexity Low_complexity 1 22 0 444 148 11 23 chr4 144487795 144487883 -39800779 - MLT2C1 LTR ERVL -48 349 263 623 171 93 0 chr4 144487893 144488022 -39800640 - MLT2C1 LTR ERVL -243 154 14 220 274 0 0 chr4 144488260 144488333 -39800329 + T-rich Low_complexity Low_complexity 1 73 0 535 317 88 20 chr4 144488334 144488487 -39800175 + L2 LINE L2 2461 2602 -712 2237 105 0 0 chr4 144488487 144488782 -39799880 + AluY SINE Alu 1 295 -16 535 317 88 20 chr4 144488782 144488934 -39799728 + L2 LINE L2 2602 2787 -527 1665 196 2 66 chr4 144488936 144489344 -39799318 + MLT1B LTR MaLR 3 384 -6 796 314 49 38 chr4 144489344 144489863 -39798799 + L2 LINE L2 2777 3301 -12 772 164 0 8 chr4 144490012 144490146 -39798516 - FLAM_C SINE Alu 0 133 1 1788 77 0 0 chr4 144490172 144490392 -39798270 - AluY SINE Alu -11 300 81 424 259 28 56 chr4 144490766 144490909 -39797753 - MER5A DNA MER1_type -1 188 50 278 322 58 0 chr4 144491480 144491567 -39797095 + L2 LINE L2 3196 3287 -26 23 0 0 0 chr4 144491855 144491878 -39796784 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr4 144492433 144492455 -39796207 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 144492865 144492895 -39795767 + AT_rich Low_complexity Low_complexity 1 30 0 2028 119 0 3 chr4 144493444 144493765 -39794897 - AluSx SINE Alu 0 320 1 1509 185 72 10 chr4 144494354 144494646 -39794016 + AluJo SINE Alu 1 310 -2 737 163 28 16 chr4 144494670 144494922 -39793740 + GA-rich Low_complexity Low_complexity 1 255 0 473 296 56 21 chr4 144495137 144495279 -39793383 + MIR SINE MIR 2 148 -114 1859 180 6 12 chr4 144495281 144495620 -39793042 - MER2 DNA MER2_type -2 343 7 324 270 34 0 chr4 144495624 144495713 -39792949 + MIR SINE MIR 156 247 -15 305 230 171 45 chr4 144496513 144496647 -39792015 + MIR SINE MIR 15 131 -131 1485 184 96 26 chr4 144496647 144497034 -39791628 - LTR52 LTR ERVL -3 418 5 305 230 171 45 chr4 144497034 144497064 -39791598 + MIR SINE MIR 131 249 -13 1644 248 19 24 chr4 144497613 144497895 -39790767 - L1ME1 LINE L1 -4 6398 6117 2209 216 89 15 chr4 144497895 144498478 -39790184 - MLT1E2 LTR MaLR 0 626 1 1644 248 19 24 chr4 144498478 144498662 -39790000 - L1ME1 LINE L1 -285 6117 5934 579 243 124 31 chr4 144498662 144498888 -39789774 + LTR48 LTR ERV1 1 247 -540 574 231 71 71 chr4 144498881 144499149 -39789513 + LTR48 LTR ERV1 471 738 -49 * 1528 198 38 94 chr4 144499201 144499999 -39788663 - L1ME1 LINE L1 -463 5939 5178 2529 132 25 28 chr4 144500044 144500476 -39788186 - Tigger2a DNA MER2_type 0 434 4 1770 234 64 38 chr4 144500490 144500610 -39788052 - L1ME1 LINE L1 -3574 2808 2693 1694 205 40 0 chr4 144500610 144500961 -39787701 + MLT1A1 LTR MaLR 1 365 0 1770 234 64 38 chr4 144500961 144501004 -39787658 - L1ME1 LINE L1 -3689 2693 2653 1784 158 7 4 chr4 144501004 144501282 -39787380 - AluJb SINE Alu -11 301 23 1770 234 64 38 chr4 144501282 144502125 -39786537 - L1ME1 LINE L1 -3729 2653 1829 861 204 70 131 chr4 144502214 144502232 -39786430 + MLT1A2 LTR MaLR 1 19 -355 198 0 0 0 chr4 144502232 144502254 -39786408 + (CA)n Simple_repeat Simple_repeat 2 23 0 861 204 70 131 chr4 144502254 144502440 -39786222 + MLT1A2 LTR MaLR 19 172 -202 297 0 0 0 chr4 144502440 144502473 -39786189 + (TG)n Simple_repeat Simple_repeat 2 34 0 861 204 70 131 chr4 144502473 144502665 -39785997 + MLT1A2 LTR MaLR 172 374 0 284 254 42 78 chr4 144502679 144502936 -39785726 - L1ME1 LINE L1 -4909 1475 1250 763 184 0 0 chr4 144502937 144503073 -39785589 + AluJb SINE Alu 1 136 -176 1927 164 13 7 chr4 144503594 144503904 -39784758 + AluSx SINE Alu 1 312 0 189 259 99 37 chr4 144504080 144504161 -39784501 + L2 LINE L2 3227 3312 -1 209 83 28 0 chr4 144505257 144505293 -39783369 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 961 85 14 7 chr4 144505293 144505434 -39783228 - MER107 DNA MER1_type -52 145 4 254 258 86 0 chr4 144506430 144506523 -39782139 + MARNA DNA Mariner 313 413 -173 370 320 127 25 chr4 144506688 144506885 -39781777 + MIR SINE MIR 1 217 -45 5718 220 73 42 chr4 144507600 144508513 -39780149 - L1ME1 LINE L1 -5 6230 5347 2216 187 74 17 chr4 144508513 144508988 -39779674 + MLT1D LTR MaLR 1 502 -3 5718 220 73 42 chr4 144508988 144510574 -39778088 - L1ME1 LINE L1 -888 5347 3639 536 258 73 0 chr4 144510617 144510850 -39777812 - L1ME1 LINE L1 -2659 3556 3307 * 3394 240 108 21 chr4 144510839 144512113 -39776549 - L1ME1 LINE L1 -4992 1404 20 289 253 0 89 chr4 144512227 144512306 -39776356 + L2 LINE L2 3186 3257 -15 237 292 31 46 chr4 144512480 144512610 -39776052 - MLT1K LTR MaLR -248 340 213 375 333 70 45 chr4 144514850 144515162 -39773500 + L1MC4a LINE L1 5777 6096 -1712 212 229 114 14 chr4 144515219 144515289 -39773373 - MER5A DNA MER1_type -57 132 56 200 198 105 70 chr4 144515248 144515334 -39773328 + MER5A DNA MER1_type 101 189 0 * 372 167 0 0 chr4 144515523 144515583 -39773079 - Tigger1 DNA MER2_type 0 2418 2359 390 183 0 0 chr4 144515912 144515983 -39772679 + LTR16B LTR ERVL 394 464 0 385 374 47 3 chr4 144516198 144516495 -39772167 + MERVL LTR ERVL 4452 4761 -724 1361 99 50 10 chr4 144516948 144516974 -39771688 + AluSg/x SINE Alu 97 121 -191 351 0 0 0 chr4 144516974 144517013 -39771649 + (CA)n Simple_repeat Simple_repeat 2 40 0 1361 99 50 10 chr4 144517013 144517188 -39771474 + AluSg/x SINE Alu 121 306 -6 1566 156 25 121 chr4 144517896 144518327 -39770335 + MLT1B LTR MaLR 1 390 0 373 134 278 0 chr4 144518501 144518598 -39770064 + MER69 DNA AcHobo 1460 1583 -943 5884 77 1 51 chr4 144518605 144518830 -39769832 + L1PA13 LINE L1 5285 5520 -643 1972 141 0 44 chr4 144518830 144519128 -39769534 + AluSx SINE Alu 9 293 -19 5884 77 1 51 chr4 144519128 144519329 -39769333 + L1PA13 LINE L1 5520 5730 -433 2163 122 0 0 chr4 144519329 144519623 -39769039 + AluSq SINE Alu 1 294 -19 5884 77 1 51 chr4 144519623 144520115 -39768547 + L1PA13 LINE L1 5729 6158 -5 22 0 0 0 chr4 144520115 144520137 -39768525 + AT_rich Low_complexity Low_complexity 1 22 0 1586 206 41 29 chr4 144520177 144520663 -39767999 + MER69 DNA AcHobo 1631 2122 -404 376 242 106 69 chr4 144520666 144521244 -39767418 + L1M4 LINE L1 2849 3447 -2699 1799 283 86 27 chr4 144521361 144521778 -39766884 + L1M4 LINE L1 3614 4005 -2141 569 199 7 73 chr4 144521778 144521914 -39766748 + FLAM_A SINE Alu 1 127 -6 1799 283 86 27 chr4 144521914 144522760 -39765902 + L1M4 LINE L1 4005 4963 -1183 1823 174 36 39 chr4 144522760 144523146 -39765516 - MLT1B LTR MaLR -3 387 3 1799 283 86 27 chr4 144523146 144523226 -39765436 + L1M4 LINE L1 4963 5037 -1109 3195 250 60 33 chr4 144523233 144524430 -39764232 + L1MEc LINE L1 105 1333 -5063 2068 141 0 7 chr4 144524479 144524784 -39763878 - AluSx SINE Alu -9 303 1 494 317 8 66 chr4 144525017 144525183 -39763479 - MIR3 SINE MIR -41 167 11 1772 195 63 31 chr4 144525422 144525867 -39762795 + Charlie1b DNA MER1_type 30 492 -2269 2203 105 0 7 chr4 144525867 144526161 -39762501 + AluSg SINE Alu 1 292 -18 1772 195 63 31 chr4 144526161 144526193 -39762469 + Charlie1b DNA MER1_type 492 522 -1 263 318 61 89 chr4 144526193 144526473 -39762189 - L2 LINE L2 -501 2813 2542 24 0 0 0 chr4 144527226 144527250 -39761412 + GC_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr4 144527510 144527543 -39761119 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr4 144527664 144527687 -39760975 + AT_rich Low_complexity Low_complexity 1 23 0 297 176 35 106 chr4 144527869 144527954 -39760708 + MIR SINE MIR 183 261 -1 21 57 0 0 chr4 144527965 144528000 -39760662 + AT_rich Low_complexity Low_complexity 1 35 0 842 196 92 32 chr4 144528358 144528608 -39760054 + L1MD3 LINE L1 7730 7994 -1 281 278 247 0 chr4 144530205 144530302 -39758360 + L2 LINE L2 3188 3308 -5 2251 129 3 0 chr4 144531217 144531526 -39757136 + AluSx SINE Alu 3 312 0 919 233 0 0 chr4 144531562 144531738 -39756924 - FRAM SINE Alu -3 173 1 1534 175 80 15 chr4 144532034 144532308 -39756354 + AluJo SINE Alu 2 293 -19 380 116 0 14 chr4 144532335 144532404 -39756258 + (GGAA)n Simple_repeat Simple_repeat 3 70 0 645 271 12 7 chr4 144532425 144532651 -39756011 - L1MC5 LINE L1 -1021 6793 6559 1315 124 5 0 chr4 144532764 144532957 -39755705 - Tigger3b DNA MER2_type 0 1232 1039 2147 134 0 7 chr4 144534271 144534577 -39754085 - AluSx SINE Alu -8 304 1 23 54 0 0 chr4 144534586 144534623 -39754039 + AT_rich Low_complexity Low_complexity 1 37 0 32684 70 12 3 chr4 144534786 144539312 -39749350 + L1PA5 LINE L1 11 4578 -1568 6203 59 1 8 chr4 144539312 144540102 -39748560 + L1PA5 LINE L1 5362 6152 -2 185 291 25 38 chr4 144540375 144540454 -39748208 + MER5A DNA MER1_type 112 189 0 2022 128 0 0 chr4 144540499 144540772 -39747890 - AluSx SINE Alu -39 273 1 5323 120 46 13 chr4 144541521 144542437 -39746225 - Tigger3b DNA MER2_type -285 946 1 2362 80 0 10 chr4 144542566 144542865 -39745797 - AluSg1 SINE Alu -12 297 2 1893 113 0 8 chr4 144542866 144543114 -39745548 - AluSc SINE Alu -12 297 52 628 269 143 10 chr4 144543223 144543614 -39745048 - L1MC4a LINE L1 -1643 6165 5723 194 379 32 24 chr4 144543623 144543747 -39744915 - L2 LINE L2 -1308 2006 1882 309 375 31 16 chr4 144543788 144543980 -39744682 - L2 LINE L2 -1421 1893 1699 382 292 113 36 chr4 144544216 144544411 -39744251 + L2 LINE L2 3104 3313 0 1157 209 79 8 chr4 144544638 144544892 -39743770 + AluJo SINE Alu 30 301 -11 798 213 38 0 chr4 144545289 144545449 -39743213 - FRAM SINE Alu 0 166 1 692 195 67 67 chr4 144546493 144546703 -39741959 + MER63A DNA MER1_type 1 210 0 229 244 73 24 chr4 144546779 144546861 -39741801 + MLT1J LTR MaLR 100 185 -326 345 233 16 54 chr4 144547139 144547268 -39741394 + MLT1J LTR MaLR 378 501 -10 197 322 17 0 chr4 144547468 144547527 -39741135 - MIR SINE MIR -11 251 192 863 194 38 27 chr4 144547528 144547714 -39740948 + MIR SINE MIR 75 262 0 5631 100 13 17 chr4 144547927 144548286 -39740376 - L1PB1 LINE L1 -4 6147 5788 459 0 0 0 chr4 144548286 144548337 -39740325 + (CA)n Simple_repeat Simple_repeat 2 52 0 369 0 0 0 chr4 144548336 144548377 -39740285 + (TA)n Simple_repeat Simple_repeat 2 42 0 * 5631 100 13 17 chr4 144548337 144548379 -39740283 - L1PB1 LINE L1 -363 5788 5747 2078 123 3 7 chr4 144548379 144548672 -39739990 - AluSx SINE Alu -20 292 1 5631 100 13 17 chr4 144548672 144549269 -39739393 - L1PB1 LINE L1 -404 5747 5190 1801 161 143 13 chr4 144549591 144549970 -39738692 - MSTA LTR MaLR 0 428 1 9408 140 6 48 chr4 144549970 144551618 -39737044 - MSTA-int LTR MaLR 0 1580 3 1967 134 139 16 chr4 144551620 144552001 -39736661 - MSTA LTR MaLR 0 428 1 275 274 65 32 chr4 144552254 144552378 -39736284 - L2 LINE L2 0 3272 3145 1857 139 43 4 chr4 144552493 144552773 -39735889 - AluJb SINE Alu -21 291 1 1659 259 126 57 chr4 144553037 144553501 -39735161 + L2 LINE L2 723 1153 -2160 2165 94 0 66 chr4 144553501 144553821 -39734841 + AluSx SINE Alu 1 299 -13 1659 259 126 57 chr4 144553821 144554393 -39734269 + L2 LINE L2 1153 1684 -1629 2167 90 0 35 chr4 144554393 144554713 -39733949 - AluSg SINE Alu 0 310 1 1659 259 126 57 chr4 144554713 144554826 -39733836 + L2 LINE L2 1684 3298 -15 456 266 9 9 chr4 144554803 144554912 -39733750 - L2 LINE L2 0 3313 3205 * 373 205 0 0 chr4 144554923 144555001 -39733661 - L2 LINE L2 -281 3032 2955 645 157 9 0 chr4 144555001 144555108 -39733554 + MSTD LTR MaLR 1 108 -288 278 75 0 0 chr4 144555108 144555148 -39733514 + MER57A LTR ERV1 1 40 -363 247 148 0 0 chr4 144555166 144555220 -39733442 - L1MC4 LINE L1 -1341 6701 6648 1322 84 0 0 chr4 144555223 144555389 -39733273 - AluSp SINE Alu -11 302 137 2169 152 14 0 chr4 144555389 144555757 -39732905 + MER57A LTR ERV1 31 403 0 1182 202 17 53 chr4 144555757 144556020 -39732642 + MSTD LTR MaLR 105 357 -39 2446 117 3 32 chr4 144556020 144556094 -39732568 - THE1B LTR MaLR 0 364 289 2121 125 0 17 chr4 144556094 144556391 -39732271 + AluSx SINE Alu 1 292 -20 2446 117 3 32 chr4 144556391 144556691 -39731971 - THE1B LTR MaLR -75 289 1 1182 202 17 53 chr4 144556691 144556728 -39731934 + MSTD LTR MaLR 357 394 -2 648 248 61 28 chr4 144556732 144556946 -39731716 - L2 LINE L2 -358 2956 2736 23 33 0 0 chr4 144556946 144556976 -39731686 + AT_rich Low_complexity Low_complexity 1 30 0 1986 107 52 0 chr4 144557158 144557430 -39731232 + AluSx SINE Alu 1 286 -26 234 216 20 0 chr4 144557503 144557554 -39731108 - L1MC4 LINE L1 -368 7674 7623 * 1618 155 85 21 chr4 144557551 144557939 -39730723 - L1MB8 LINE L1 0 6178 5766 245 242 15 0 chr4 144557942 144558008 -39730654 - L2 LINE L2 -569 2745 2679 * 402 215 0 0 chr4 144558005 144558084 -39730578 - L2 LINE L2 -1311 2003 1925 362 306 122 36 chr4 144558868 144559090 -39729572 - L1M2 LINE L1 -5486 1363 1123 357 307 94 87 chr4 144559456 144559902 -39728760 + L1M2 LINE L1 822 1270 -5579 775 188 72 17 chr4 144562285 144562299 -39726363 - MER3 DNA MER1_type -18 191 179 1988 125 3 38 chr4 144562299 144562619 -39726043 - AluJb SINE Alu -3 309 1 775 188 72 17 chr4 144562619 144562785 -39725877 - MER3 DNA MER1_type -30 179 1 501 244 96 74 chr4 144563039 144563268 -39725394 - MIR SINE MIR -14 248 15 262 358 73 13 chr4 144563954 144564105 -39724557 - MIR3 SINE MIR -13 195 36 252 0 0 0 chr4 144565720 144565748 -39722914 + (TG)n Simple_repeat Simple_repeat 1 28 0 432 139 76 0 chr4 144566277 144566356 -39722306 + MER3 DNA MER1_type 1 85 -124 22 0 0 0 chr4 144566362 144566384 -39722278 + AT_rich Low_complexity Low_complexity 1 22 0 31 0 0 0 chr4 144566704 144566735 -39721927 + AT_rich Low_complexity Low_complexity 1 31 0 290 325 0 0 chr4 144567808 144567891 -39720771 + MIR SINE MIR 6 88 -174 1040 130 14 0 chr4 144568545 144568691 -39719971 + FRAM SINE Alu 18 165 -11 3684 172 132 7 chr4 144569342 144570105 -39718557 - MER21B LTR ERV1 -4 859 1 214 336 96 40 chr4 144570968 144571093 -39717569 - L2 LINE L2 0 3272 3141 2239 87 0 0 chr4 144571215 144571503 -39717159 - AluSg SINE Alu -22 288 1 192 222 111 56 chr4 144571787 144571859 -39716803 - MER5B DNA MER1_type 0 178 103 185 268 0 84 chr4 144571894 144571965 -39716697 + L2 LINE L2 3237 3301 -12 481 148 9 78 chr4 144572325 144572440 -39716222 + MER20 DNA MER1_type 42 148 -71 1594 189 37 10 chr4 144572855 144573151 -39715511 - AluJo SINE Alu -6 306 3 436 222 96 44 chr4 144573550 144573685 -39714977 + MIR SINE MIR 85 226 -36 1085 200 17 29 chr4 144573754 144573994 -39714668 - MER8 DNA MER2_type -1 238 2 212 271 0 34 chr4 144575664 144575723 -39712939 - L3 LINE CR1 -232 1345 1289 248 241 96 24 chr4 144576046 144576129 -39712533 - L1ME LINE L1 -299 5822 5734 646 284 234 28 chr4 144576168 144576421 -39712241 + L2 LINE L2 369 569 -2745 1910 135 62 6 chr4 144576421 144576585 -39712077 + MER46B DNA MER2_type 2 71 -2660 1823 152 28 0 chr4 144576585 144576875 -39711787 + AluJb SINE Alu 1 298 -14 1910 135 62 6 chr4 144576875 144577051 -39711611 + MER46B DNA MER2_type 71 236 0 646 284 234 28 chr4 144577051 144577152 -39711510 + L2 LINE L2 569 796 -2518 1306 213 86 62 chr4 144577303 144577818 -39710844 + L2 LINE L2 2517 3059 -254 301 213 87 134 chr4 144577818 144577945 -39710717 + L2 LINE L2 3193 3313 0 384 333 58 22 chr4 144578991 144579216 -39709446 + MIR SINE MIR 28 260 -2 3458 128 27 2 chr4 144580884 144581446 -39707216 + MER6A DNA MER2_type 1 576 -29 1334 86 11 0 chr4 144582703 144582878 -39705784 + AluY SINE Alu 122 298 -13 750 124 0 0 chr4 144583190 144583295 -39705367 - AluJb SINE Alu -207 105 1 1880 138 3 62 chr4 144583543 144583897 -39704765 - L1M3 LINE L1 -435 5736 5404 1074 232 116 9 chr4 144583897 144584216 -39704446 + MSTD LTR MaLR 1 353 -43 26 30 0 0 chr4 144584668 144584701 -39703961 + AT_rich Low_complexity Low_complexity 1 33 0 1905 138 10 7 chr4 144585008 144585298 -39703364 + AluSx SINE Alu 1 291 -21 512 303 55 52 chr4 144585996 144586396 -39702266 - MLT1J2 LTR MaLR -23 427 27 21 36 0 0 chr4 144586573 144586601 -39702061 + AT_rich Low_complexity Low_complexity 1 28 0 341 351 243 9 chr4 144587062 144587495 -39701167 + L2 LINE L2 2430 2963 -351 1998 137 20 0 chr4 144587785 144588077 -39700585 + AluSx SINE Alu 3 300 -12 186 339 165 18 chr4 144588734 144588843 -39699819 - L2 LINE L2 0 3272 3148 2083 140 159 0 chr4 144589004 144589382 -39699280 - MLT1C LTR MaLR 0 467 30 1023 316 48 10 chr4 144589519 144589934 -39698728 - HERV16 LTR ERVL -1105 4549 4119 1292 248 34 13 chr4 144590089 144590565 -39698097 - HERV16 LTR ERVL -2768 2228 1706 373 321 36 2 chr4 144590713 144590931 -39697731 + L1MC/D LINE L1 5106 5333 -813 1829 137 35 14 chr4 144590993 144591277 -39697385 + AluJb SINE Alu 4 293 -19 21 0 0 0 chr4 144591277 144591298 -39697364 + AT_rich Low_complexity Low_complexity 1 21 0 364 300 43 47 chr4 144591320 144591356 -39697306 + L1MC/D LINE L1 5414 5449 -715 1684 171 66 30 chr4 144591356 144591718 -39696944 - THE1C LTR MaLR 0 375 1 364 300 43 47 chr4 144591718 144591914 -39696748 + L1MC/D LINE L1 5449 5645 -519 421 307 137 16 chr4 144591959 144592324 -39696338 - LTR50 LTR ERVL 0 795 387 362 273 49 7 chr4 144592419 144592546 -39696116 - LTR33A LTR ERVL -361 160 53 293 297 17 0 chr4 144592582 144592700 -39695962 + L1MC/D LINE L1 5689 5808 -2000 2352 139 16 29 chr4 144592710 144593162 -39695500 + Tigger2 DNA MER2_type 1 446 -2272 8301 123 21 16 chr4 144593262 144594607 -39694055 + Tigger2 DNA MER2_type 1368 2718 0 318 167 0 0 chr4 144594626 144594680 -39693982 - MSTB2 LTR MaLR 0 457 404 1184 139 17 0 chr4 144594781 144594954 -39693708 - AluSx SINE Alu -136 176 1 604 267 51 28 chr4 144596205 144596460 -39692202 - L1ME4a LINE L1 -266 5855 5595 788 258 19 72 chr4 144597136 144597400 -39691262 + MIR SINE MIR 13 262 0 1709 153 129 15 chr4 144597502 144597828 -39690834 - MLT1A1 LTR MaLR 0 365 3 478 267 74 15 chr4 144598058 144598193 -39690469 + L2 LINE L2 3127 3269 -3 276 313 0 0 chr4 144598740 144598804 -39689858 - L2 LINE L2 -6 3266 3203 28 0 0 0 chr4 144598908 144598936 -39689726 + AT_rich Low_complexity Low_complexity 1 28 0 1498 247 136 26 chr4 144599105 144600169 -39688493 - L1ME LINE L1 -2885 3195 2051 1273 193 53 4 chr4 144600208 144600473 -39688189 - AluJo SINE Alu -13 299 22 1107 292 114 23 chr4 144600485 144601799 -39686863 - L1ME LINE L1 -4256 2005 529 180 125 0 0 chr4 144602232 144602264 -39686398 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 531 227 13 65 chr4 144602801 144602886 -39685776 + MIR SINE MIR 113 188 -74 1325 232 38 38 chr4 144602886 144603256 -39685406 - MLT1A2 LTR MaLR -4 370 1 531 227 13 65 chr4 144603256 144603324 -39685338 + MIR SINE MIR 188 258 -4 417 20 0 0 chr4 144604062 144604112 -39684550 + (TG)n Simple_repeat Simple_repeat 1 50 0 21 71 0 0 chr4 144604228 144604270 -39684392 + AT_rich Low_complexity Low_complexity 1 42 0 276 262 119 12 chr4 144604773 144604857 -39683805 - MER5A DNA MER1_type -66 123 31 311 274 68 53 chr4 144604991 144605181 -39683481 - L1ME3A LINE L1 -88 6082 5890 227 271 86 86 chr4 144605692 144605832 -39682830 - MIR SINE MIR -27 235 96 253 255 20 69 chr4 144606425 144606527 -39682135 + L2 LINE L2 3169 3265 -48 999 202 0 17 chr4 144607048 144607226 -39681436 + FAM SINE Alu 1 175 0 1508 116 0 0 chr4 144607228 144607435 -39681227 + AluSq SINE Alu 95 301 -12 427 181 0 0 chr4 144607738 144607810 -39680852 + MER5A DNA MER1_type 2 73 -116 671 119 25 8 chr4 144607811 144607929 -39680733 - L1MA7 LINE L1 -2 6289 6170 183 156 0 0 chr4 144607942 144607974 -39680688 + T-rich Low_complexity Low_complexity 3 34 0 2418 98 0 0 chr4 144608016 144608323 -39680339 - AluSx SINE Alu -5 307 1 972 175 76 66 chr4 144608383 144608594 -39680068 + AluJo SINE Alu 85 297 -15 1605 101 85 43 chr4 144608595 144608923 -39679739 - L1MA7 LINE L1 -157 6134 5793 1291 180 38 9 chr4 144608926 144609265 -39679397 + L1MA7 LINE L1 5386 5765 -418 629 176 30 38 chr4 144609267 144609398 -39679264 + MER5A DNA MER1_type 60 189 0 1051 177 69 31 chr4 144610545 144610833 -39677829 + L1MD1 LINE L1 5944 6242 0 356 143 130 0 chr4 144610868 144610945 -39677717 - Charlie1 DNA MER1_type -1073 1688 1602 2217 55 41 14 chr4 144610953 144611245 -39677417 + AluY SINE Alu 1 300 -11 822 75 9 0 chr4 144611249 144611356 -39677306 + AluSp SINE Alu 3 110 -203 914 174 12 24 chr4 144611883 144612050 -39676612 - FRAM SINE Alu 0 166 2 267 133 0 0 chr4 144613597 144613642 -39675020 + (GGCTG)n Simple_repeat Simple_repeat 3 47 0 561 174 184 45 chr4 144614527 144614728 -39673934 + L1MC4 LINE L1 6915 7143 -899 367 271 112 43 chr4 144614784 144614972 -39673690 + MIR SINE MIR 12 212 -50 22 56 0 0 chr4 144615111 144615147 -39673515 + AT_rich Low_complexity Low_complexity 1 36 0 471 252 151 64 chr4 144615159 144615212 -39673450 - MIR SINE MIR -24 238 191 2685 17 0 0 chr4 144615212 144615510 -39673152 - AluYa5 SINE Alu -13 298 1 471 252 151 64 chr4 144615510 144615674 -39672988 - MIR SINE MIR -71 191 2 1800 123 0 83 chr4 144615851 144616035 -39672627 - AluSx SINE Alu -15 297 150 2190 118 0 19 chr4 144616035 144616048 -39672614 - AluSg SINE Alu -3 307 295 366 23 0 0 chr4 144616048 144616091 -39672571 + (CA)n Simple_repeat Simple_repeat 2 44 0 2190 118 0 19 chr4 144616091 144616390 -39672272 - AluSg SINE Alu -15 295 1 1800 123 0 83 chr4 144616390 144616529 -39672133 - AluSx SINE Alu -162 150 1 580 309 85 9 chr4 144616795 144617018 -39671644 + MIR SINE MIR 1 240 -22 183 218 172 11 chr4 144617047 144617134 -39671528 - MIR SINE MIR -96 166 66 225 254 75 15 chr4 144617745 144617812 -39670850 - MIR SINE MIR -111 97 27 274 340 38 9 chr4 144617864 144617970 -39670692 - MER5A DNA MER1_type -80 109 1 191 250 0 0 chr4 144618029 144618073 -39670589 - L2 LINE L2 -8 3305 3262 369 255 75 0 chr4 144618823 144618929 -39669733 + MIR SINE MIR 36 149 -113 225 308 64 0 chr4 144618966 144619044 -39669618 + L2 LINE L2 3170 3252 -20 461 273 56 6 chr4 144619577 144619751 -39668911 - MIR3 SINE MIR -7 201 14 443 248 26 8 chr4 144621260 144621377 -39667285 + MER94 DNA DNA 16 134 0 1831 138 7 36 chr4 144621396 144621700 -39666962 + AluJo SINE Alu 5 299 -13 1805 173 23 18 chr4 144621867 144622255 -39666407 + MLT1B LTR MaLR 1 390 0 510 295 85 40 chr4 144622319 144622896 -39665766 + L1MC4 LINE L1 4538 5140 -1006 3637 233 96 37 chr4 144623019 144625503 -39663159 + L1MC4 LINE L1 5317 7993 -2 387 113 99 0 chr4 144625865 144625936 -39662726 + MADE1 DNA Mariner 1 78 -2 2327 85 27 3 chr4 144630961 144631256 -39657406 - AluSx SINE Alu -10 302 1 1258 189 35 25 chr4 144631991 144632276 -39656386 + L1MC1 LINE L1 6046 6333 0 2356 94 0 3 chr4 144632287 144632594 -39656068 + AluSq SINE Alu 1 306 -7 963 243 67 0 chr4 144633087 144633297 -39655365 + MER58A DNA MER1_type 1 224 0 192 40 0 0 chr4 144633548 144633573 -39655089 + (TG)n Simple_repeat Simple_repeat 2 26 0 471 181 48 0 chr4 144635324 144635429 -39653233 + L1M1 LINE L1 25 134 -7431 3021 239 81 70 chr4 144635523 144636192 -39652470 + L1MC4 LINE L1 6327 6987 -1055 1804 147 11 14 chr4 144636192 144636519 -39652143 - AluSx SINE Alu 0 326 1 3021 239 81 70 chr4 144636519 144637355 -39651307 + L1MC4 LINE L1 6987 7850 -192 289 206 8 107 chr4 144637500 144637631 -39651031 + L1MC4 LINE L1 7924 8041 -1 1720 154 4 4 chr4 144638244 144638510 -39650152 + AluSx SINE Alu 25 290 -22 225 222 37 0 chr4 144638564 144638618 -39650044 - L1MC/D LINE L1 -2256 5552 5497 525 310 157 53 chr4 144638722 144639526 -39649136 + L1ME LINE L1 4340 5226 -920 467 264 157 22 chr4 144639557 144639907 -39648755 + L1ME LINE L1 5286 5681 -440 1568 164 21 35 chr4 144640882 144641200 -39647462 - AluJb SINE Alu 0 314 1 2204 130 27 9 chr4 144641300 144641631 -39647031 - MER1B DNA MER1_type 0 337 1 257 70 47 0 chr4 144643055 144643098 -39645564 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 293 286 87 16 chr4 144643344 144643470 -39645192 + MIR3 SINE MIR 20 154 -54 225 281 0 0 chr4 144644340 144644404 -39644258 + (TA)n Simple_repeat Simple_repeat 1 64 0 1767 123 11 8 chr4 144644439 144644699 -39643963 - AluSx SINE Alu -2 310 50 1810 137 48 0 chr4 144644699 144644968 -39643694 - AluSx SINE Alu -29 283 1 287 316 10 20 chr4 144647929 144648027 -39640635 + MIR SINE MIR 88 184 -78 534 271 67 2 chr4 144648540 144648716 -39639946 + MIR SINE MIR 32 217 -45 2494 84 3 0 chr4 144649027 144649338 -39639324 - AluSp SINE Alu 0 313 2 338 308 46 23 chr4 144649347 144649477 -39639185 - MIR SINE MIR -122 140 8 469 337 154 15 chr4 144650444 144650839 -39637823 - L2 LINE L2 -15 3257 2808 302 289 160 31 chr4 144650880 144651174 -39637488 - L2 LINE L2 -1168 2146 1815 913 138 0 0 chr4 144651183 144651306 -39637356 - FLAM_C SINE Alu -20 123 1 235 247 235 0 chr4 144652027 144652112 -39636550 + L2 LINE L2 3168 3272 0 1910 142 18 0 chr4 144653028 144653303 -39635359 + AluSx SINE Alu 1 280 -32 204 40 0 0 chr4 144653304 144653329 -39635333 + (GAAAA)n Simple_repeat Simple_repeat 3 27 0 17174 171 27 27 chr4 144653723 144655017 -39633645 + L1PA13 LINE L1 1 1292 -5522 288 0 0 0 chr4 144655017 144655049 -39633613 + (CTG)n Simple_repeat Simple_repeat 1 32 0 17174 171 27 27 chr4 144655049 144660092 -39628570 + L1PA13 LINE L1 1292 6414 -400 2100 141 39 30 chr4 144660092 144660453 -39628209 - THE1B LTR MaLR 0 364 1 17174 171 27 27 chr4 144660453 144660850 -39627812 + L1PA13 LINE L1 6414 6809 -5 2387 98 0 13 chr4 144660860 144661175 -39627487 + AluY SINE Alu 1 311 0 31 0 0 0 chr4 144661186 144661217 -39627445 + AT_rich Low_complexity Low_complexity 1 31 0 216 0 0 0 chr4 144661355 144661379 -39627283 + (GAAA)n Simple_repeat Simple_repeat 1 24 0 1899 133 6 63 chr4 144661484 144661654 -39627008 - AluSx SINE Alu -13 299 154 243 0 0 0 chr4 144661654 144661681 -39626981 + (TTA)n Simple_repeat Simple_repeat 3 29 0 1899 133 6 63 chr4 144661681 144661827 -39626835 - AluSx SINE Alu -158 154 1 591 263 88 0 chr4 144661973 144662144 -39626518 + MIR SINE MIR 61 246 -16 35507 89 9 6 chr4 144662343 144668468 -39620194 + L1PA6 LINE L1 11 6151 -3 23 0 0 0 chr4 144668757 144668780 -39619882 + AT_rich Low_complexity Low_complexity 1 23 0 304 339 103 18 chr4 144669615 144669839 -39618823 + MIR SINE MIR 20 262 0 246 122 0 0 chr4 144669931 144669972 -39618690 + L1MB8 LINE L1 6134 6174 -4 894 288 138 55 chr4 144670411 144671029 -39617633 + L2 LINE L2 2118 2786 -528 394 239 77 31 chr4 144671030 144671160 -39617502 + MER20B DNA MER1_type 1 136 -647 882 272 123 3 chr4 144671188 144671530 -39617132 + MER20B DNA MER1_type 230 612 -171 398 273 0 0 chr4 144671889 144671988 -39616674 + L2 LINE L2 3174 3272 0 325 305 152 56 chr4 144672749 144673018 -39615644 + L2 LINE L2 2973 3267 -5 2135 125 0 0 chr4 144673103 144673391 -39615271 + AluSx SINE Alu 1 288 -24 600 169 127 0 chr4 144673588 144673706 -39614956 - FLAM_C SINE Alu 0 133 1 271 294 39 10 chr4 144674059 144674161 -39614501 - MIR3 SINE MIR -54 154 50 1157 119 18 50 chr4 144674866 144675084 -39613578 + MER2 DNA MER2_type 1 211 -134 217 208 26 0 chr4 144675705 144675782 -39612880 + GA-rich Low_complexity Low_complexity 3 81 0 301 306 134 30 chr4 144676342 144676476 -39612186 - HAL1 LINE L1 -1682 825 678 207 0 0 0 chr4 144676824 144676847 -39611815 + (TTA)n Simple_repeat Simple_repeat 2 24 0 497 282 0 16 chr4 144677260 144677384 -39611278 - L2 LINE L2 -3 3310 3189 1925 141 91 21 chr4 144677394 144677734 -39610928 + THE1B LTR MaLR 1 364 0 507 284 7 47 chr4 144677963 144678111 -39610551 + MIR3 SINE MIR 29 170 -38 324 70 0 0 chr4 144678412 144678455 -39610207 + (TG)n Simple_repeat Simple_repeat 2 44 0 37796 73 10 3 chr4 144679313 144685420 -39603242 - L1PA5 LINE L1 0 6154 2 273 306 94 24 chr4 144685883 144686171 -39602491 + L1ME4a LINE L1 5811 6118 -3 447 234 18 9 chr4 144686498 144686609 -39602053 + Tigger2 DNA MER2_type 2607 2718 0 1933 198 7 51 chr4 144686686 144687096 -39601566 - MSTD LTR MaLR -2 394 3 814 160 0 0 chr4 144687582 144687707 -39600955 - FLAM_A SINE Alu -8 125 1 1615 176 28 3 chr4 144687755 144688078 -39600584 - L1MB4 LINE L1 -3 6177 5847 814 187 14 0 chr4 144690311 144690450 -39598212 + FAM SINE Alu 27 167 -18 292 280 126 28 chr4 144690521 144690703 -39597959 - L2 LINE L2 -79 3234 3035 221 267 44 126 chr4 144690833 144690968 -39597694 - L2 LINE L2 -2 3311 3188 25 31 0 0 chr4 144691817 144691849 -39596813 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr4 144692112 144692141 -39596521 + AT_rich Low_complexity Low_complexity 1 29 0 1898 98 0 51 chr4 144692940 144693120 -39595542 - AluSq SINE Alu -8 305 142 2215 92 41 0 chr4 144693120 144693414 -39595248 - AluY SINE Alu -5 306 1 1898 98 0 51 chr4 144693414 144693509 -39595153 - AluSq SINE Alu -171 142 44 707 274 114 69 chr4 144693539 144693631 -39595031 - L1MEd LINE L1 -4503 1657 1571 237 33 0 0 chr4 144693631 144693661 -39595001 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 707 274 114 69 chr4 144693661 144695114 -39593548 - L1MEd LINE L1 -4589 1571 3 359 113 14 0 chr4 144695188 144695259 -39593403 + (TG)n Simple_repeat Simple_repeat 2 73 0 1865 144 3 20 chr4 144695284 144695576 -39593086 - AluJb SINE Alu -17 295 9 2011 123 31 0 chr4 144696023 144696315 -39592347 - AluSq SINE Alu 0 313 13 605 215 178 18 chr4 144696324 144696487 -39592175 - MER5A DNA MER1_type 0 189 1 2337 101 0 0 chr4 144697447 144697745 -39590917 + AluSg SINE Alu 1 298 -12 1951 87 40 11 chr4 144697745 144698049 -39590613 + AluY SINE Alu 1 312 0 1423 178 47 44 chr4 144698052 144698412 -39590250 + MLT1B LTR MaLR 30 390 0 422 330 229 29 chr4 144698416 144698935 -39589727 + L2 LINE L2 2150 2772 -542 2031 198 81 52 chr4 144699333 144699449 -39589213 - L1 LINE L1 -2201 3945 3834 1755 65 9 0 chr4 144699449 144699664 -39588998 - AluY SINE Alu -12 299 83 2031 198 81 52 chr4 144699664 144699908 -39588754 - L1 LINE L1 -2312 3834 3598 2223 126 25 27 chr4 144699908 144700273 -39588389 - THE1B LTR MaLR 0 364 1 2031 198 81 52 chr4 144700273 144700763 -39587899 - L1 LINE L1 -2548 3598 3044 2341 82 3 0 chr4 144700763 144701055 -39587607 + AluSp SINE Alu 1 293 -20 2031 198 81 52 chr4 144701055 144701460 -39587202 - L1 LINE L1 -3102 3044 2652 1889 116 14 18 chr4 144701562 144701839 -39586823 - AluSx SINE Alu -36 276 1 244 159 0 0 chr4 144701839 144701883 -39586779 + L1MA9 LINE L1 6269 6312 0 3263 109 0 36 chr4 144702121 144702323 -39586339 - L1PA14 LINE L1 -2 6159 5951 2052 103 48 0 chr4 144702323 144702595 -39586067 - AluSc SINE Alu -24 285 1 3263 109 0 36 chr4 144702595 144702916 -39585746 - L1PA14 LINE L1 -210 5951 5655 2621 114 25 23 chr4 144702918 144703518 -39585144 + L1PA14 LINE L1 5083 5670 -491 852 50 14 0 chr4 144703839 144703978 -39584684 - SVA Other Other -537 849 709 1161 194 9 28 chr4 144704390 144704601 -39584061 - AluJb SINE Alu -21 291 85 317 326 133 30 chr4 144705201 144705637 -39583025 - L2 LINE L2 -2109 1205 725 1379 244 66 93 chr4 144706146 144706336 -39582326 - MER21B LTR ERV1 -154 709 515 1977 127 96 22 chr4 144706336 144706650 -39582012 - MER1B DNA MER1_type 0 337 1 1379 244 66 93 chr4 144706650 144707056 -39581606 - MER21B LTR ERV1 -348 515 130 2464 72 0 7 chr4 144707056 144707363 -39581299 + AluY SINE Alu 1 305 -6 1379 244 66 93 chr4 144707363 144707433 -39581229 - MER21B LTR ERV1 -733 130 60 26 0 0 0 chr4 144707722 144707748 -39580914 + AT_rich Low_complexity Low_complexity 1 26 0 198 91 0 0 chr4 144709129 144709162 -39579500 + (TTAAA)n Simple_repeat Simple_repeat 4 36 0 274 351 129 20 chr4 144709922 144710124 -39578538 + L2 LINE L2 2849 3072 -200 233 324 49 20 chr4 144711242 144711344 -39577318 + MIR SINE MIR 47 151 -111 1177 143 98 20 chr4 144711835 144712038 -39576624 + MER20 DNA MER1_type 1 219 0 331 301 74 68 chr4 144713404 144713567 -39575095 + L2 LINE L2 3107 3270 -2 989 252 9 9 chr4 144715011 144715233 -39573429 + MIR SINE MIR 9 230 -32 943 156 0 32 chr4 144716146 144716300 -39572362 + AluJo SINE Alu 1 149 -163 327 109 43 0 chr4 144716335 144716381 -39572281 + AluJ/FRAM SINE Alu 227 274 -28 2296 98 6 25 chr4 144716388 144716706 -39571956 + AluSx SINE Alu 1 312 0 207 270 176 0 chr4 144718307 144718381 -39570281 + MER5A DNA MER1_type 31 117 -72 2402 62 0 0 chr4 144718422 144718713 -39569949 - AluY SINE Alu -20 291 1 668 232 81 11 chr4 144718837 144719022 -39569640 + MIR SINE MIR 65 262 0 189 361 28 0 chr4 144719614 144719686 -39568976 - L2 LINE L2 -5 3267 3194 296 107 0 6 chr4 144719762 144719808 -39568854 - MLT1D LTR MaLR 0 505 424 513 194 28 28 chr4 144719822 144719930 -39568732 - MLT1D LTR MaLR -397 108 1 222 326 29 82 chr4 144720071 144720316 -39568346 - L2 LINE L2 -229 3043 2812 180 320 0 20 chr4 144720576 144720626 -39568036 + L2 LINE L2 3204 3252 -20 445 271 84 36 chr4 144720699 144720865 -39567797 - MIR SINE MIR -53 209 36 22 0 0 0 chr4 144720882 144720904 -39567758 + AT_rich Low_complexity Low_complexity 1 22 0 19629 148 55 22 chr4 144721270 144723311 -39565351 + L1M1 LINE L1 148 2120 -5445 2242 109 10 0 chr4 144723311 144723613 -39565049 + AluSq SINE Alu 9 313 0 19629 148 55 22 chr4 144723613 144723754 -39564908 + L1M1 LINE L1 2120 2255 -5310 1731 163 38 3 chr4 144723754 144724042 -39564620 + AluJb SINE Alu 1 298 -14 19629 148 55 22 chr4 144724042 144725546 -39563116 + L1M1 LINE L1 2255 3961 -3604 1458 199 45 9 chr4 144725646 144725982 -39562680 + MLT1D LTR MaLR 158 505 0 22 80 0 0 chr4 144726006 144726056 -39562606 + AT_rich Low_complexity Low_complexity 1 50 0 23 54 0 0 chr4 144726429 144726466 -39562196 + AT_rich Low_complexity Low_complexity 1 37 0 215 278 31 41 chr4 144726512 144726609 -39562053 + L2 LINE L2 3014 3109 -163 192 200 0 0 chr4 144726718 144726753 -39561909 + L2 LINE L2 3205 3239 -33 351 263 231 13 chr4 144727414 144727570 -39561092 - MIR SINE MIR -14 248 59 21 36 0 0 chr4 144727667 144727695 -39560967 + AT_rich Low_complexity Low_complexity 1 28 0 1591 123 8 32 chr4 144731797 144732050 -39556612 - THE1B LTR MaLR 0 364 118 326 311 99 0 chr4 144732779 144732930 -39555732 + MIR SINE MIR 76 241 -21 283 103 0 0 chr4 144733074 144733113 -39555549 + MER5A DNA MER1_type 1 39 -150 359 225 62 70 chr4 144733485 144733614 -39555048 + Charlie8 DNA MER1_type 75 202 -2215 26 0 0 0 chr4 144733997 144734023 -39554639 + AT_rich Low_complexity Low_complexity 1 26 0 418 294 161 14 chr4 144736245 144736456 -39552206 + L1MC4 LINE L1 7375 7616 -426 2322 82 13 3 chr4 144736503 144736809 -39551853 + AluSc SINE Alu 1 309 0 402 236 45 9 chr4 144737241 144737351 -39551311 + L1M1 LINE L1 4369 4482 -3083 280 328 0 0 chr4 144737353 144737417 -39551245 + MER58 DNA MER1_type 4 67 -2353 1485 240 162 53 chr4 144737448 144737503 -39551159 + L1M1 LINE L1 4694 4742 -2823 976 205 80 5 chr4 144737503 144737703 -39550959 + MER20 DNA MER1_type 4 218 -1 1485 240 162 53 chr4 144737703 144737782 -39550880 + L1M1 LINE L1 4742 4811 -2754 2174 109 10 26 chr4 144737782 144738095 -39550567 + AluSx SINE Alu 1 308 -4 1485 240 162 53 chr4 144738095 144738970 -39549692 + L1M1 LINE L1 4811 5814 -1751 417 203 0 25 chr4 144738970 144739049 -39549613 + Tigger5 DNA MER2_type 1 77 -2246 462 129 29 0 chr4 144739050 144739120 -39549542 - Tigger5 DNA MER2_type -3 2320 2249 438 197 0 0 chr4 144739128 144739199 -39549463 + Tigger5 DNA MER2_type 2253 2323 0 479 193 70 0 chr4 144739205 144739319 -39549343 + L1M1 LINE L1 5827 5948 -1617 * 520 194 137 7 chr4 144739314 144739453 -39549209 + L1M4 LINE L1 2697 2853 -3293 1684 214 58 24 chr4 144740012 144740390 -39548272 - MSTD LTR MaLR -5 391 1 3750 236 125 53 chr4 144740390 144741422 -39547240 - MSTD-int LTR MaLR 0 1735 779 3448 176 49 14 chr4 144741422 144742070 -39546592 + LTR51 LTR ERV1 1 671 0 3750 236 125 53 chr4 144742070 144742168 -39546494 - MSTD-int LTR MaLR -956 779 689 306 50 0 0 chr4 144742168 144742208 -39546454 + (TC)n Simple_repeat Simple_repeat 2 41 0 189 0 0 0 chr4 144742207 144742228 -39546434 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 3750 236 125 53 chr4 144742208 144742306 -39546356 - MSTD-int LTR MaLR -1046 689 439 3588 143 72 1 chr4 144742409 144743064 -39545598 - L1MA9 LINE L1 -336 5976 5276 3351 119 63 37 chr4 144743070 144743658 -39545004 - MER4B LTR ERV1 -7 603 1 3753 56 0 4 chr4 144743689 144744139 -39544523 + LTR7 LTR ERV1 1 448 -2 19206 92 16 80 chr4 144744141 144747548 -39541114 + HERVH LTR ERV1 1 5819 -1894 2567 71 53 13 chr4 144747545 144747923 -39540739 + HERVH LTR ERV1 7321 7713 0 * 3848 42 2 2 chr4 144747923 144748371 -39540291 + LTR7 LTR ERV1 1 448 -2 2470 206 11 9 chr4 144748371 144748726 -39539936 - L1MA9 LINE L1 -891 5255 4897 2222 174 65 103 chr4 144748726 144749345 -39539317 - LTR49 LTR ERV1 0 595 1 2470 206 11 9 chr4 144749345 144749518 -39539144 - L1MA9 LINE L1 -1249 4897 4726 257 130 93 0 chr4 144749520 144749574 -39539088 - L1M2 LINE L1 -4490 2359 2301 4267 134 11 70 chr4 144749575 144750331 -39538331 - MER50 LTR ERV1 -23 711 1 5964 106 21 6 chr4 144750331 144751513 -39537149 - MER50-int LTR ERV1 -8 7197 5365 2241 81 0 13 chr4 144751513 144751676 -39536986 - AluY SINE Alu -17 294 135 2207 84 0 17 chr4 144751676 144751972 -39536690 - AluSq SINE Alu -10 303 13 2241 81 0 13 chr4 144751972 144752106 -39536556 - AluY SINE Alu -176 135 1 3273 165 36 15 chr4 144752106 144753171 -39535491 - MER50-int LTR ERV1 -805 4075 2788 11290 136 58 8 chr4 144753178 144754927 -39533735 - MER50-int LTR ERV1 -5368 1837 1 522 120 53 0 chr4 144755001 144755076 -39533586 - MER50 LTR ERV1 -12 722 644 368 325 127 36 chr4 144755816 144755982 -39532680 + MIR SINE MIR 4 184 -78 313 353 88 24 chr4 144756431 144756601 -39532061 - L3b LINE CR1 -19 1564 1384 561 277 92 5 chr4 144756963 144757147 -39531515 + MIR SINE MIR 15 214 -48 451 203 120 57 chr4 144757239 144757359 -39531303 + MIR SINE MIR 91 225 -37 2502 139 39 51 chr4 144757359 144757790 -39530872 + MSTB LTR MaLR 1 426 0 451 203 120 57 chr4 144757790 144757827 -39530835 + MIR SINE MIR 225 258 -4 236 211 0 19 chr4 144757808 144757860 -39530802 + MIR SINE MIR 145 195 -67 * 38 22 0 0 chr4 144758670 144758715 -39529947 + AT_rich Low_complexity Low_complexity 1 45 0 2471 133 29 16 chr4 144759193 144759638 -39529024 - L1MA6 LINE L1 -12 6288 5838 253 227 125 47 chr4 144760286 144760414 -39528248 - MIR SINE MIR -54 208 71 2826 10 0 0 chr4 144760506 144760814 -39527848 + AluYb8 SINE Alu 1 308 -10 2407 118 60 24 chr4 144761642 144762059 -39526603 + Tigger2a DNA MER2_type 2 433 -1 1106 271 78 47 chr4 144762558 144763096 -39525566 + L1MCb LINE L1 1 555 -5490 2332 204 73 17 chr4 144763206 144764188 -39524474 + L1MCb LINE L1 570 1609 -4856 1942 159 0 7 chr4 144764758 144765054 -39523608 - AluJb SINE Alu -18 294 1 3911 157 51 61 chr4 144765057 144765089 -39523573 - L1MB2 LINE L1 0 6171 6140 1495 190 3 17 chr4 144765089 144765384 -39523278 + AluJo SINE Alu 1 291 -21 3911 157 51 61 chr4 144765384 144765903 -39522759 - L1MB2 LINE L1 -31 6140 5618 2742 88 8 8 chr4 144765903 144766278 -39522384 - THE1C LTR MaLR 0 375 1 3911 157 51 61 chr4 144766278 144766418 -39522244 - L1MB2 LINE L1 -553 5618 5478 2322 91 3 0 chr4 144766418 144766716 -39521946 - AluSp SINE Alu -14 299 1 3911 157 51 61 chr4 144766716 144766980 -39521682 - L1MB2 LINE L1 -693 5478 5225 243 0 0 0 chr4 144767279 144767306 -39521356 + (TA)n Simple_repeat Simple_repeat 1 27 0 2078 173 31 14 chr4 144767318 144767741 -39520921 + MLT1C LTR MaLR 24 453 -14 1037 125 13 103 chr4 144767818 144768042 -39520620 + L1M3 LINE L1 5333 5536 -635 2252 112 0 0 chr4 144768890 144769185 -39519477 + AluSx SINE Alu 1 295 -17 248 178 0 0 chr4 144769226 144769271 -39519391 + L2 LINE L2 3269 3313 0 825 234 82 30 chr4 144770469 144770700 -39517962 + MIR SINE MIR 20 262 0 2074 122 0 3 chr4 144771010 144771304 -39517358 - AluJb SINE Alu -19 293 1 276 53 0 0 chr4 144771540 144771578 -39517084 + (CA)n Simple_repeat Simple_repeat 2 39 0 2127 153 75 8 chr4 144771787 144772186 -39516476 + MSTB LTR MaLR 1 426 0 23 33 0 0 chr4 144772267 144772297 -39516365 + AT_rich Low_complexity Low_complexity 1 30 0 306 0 0 0 chr4 144772383 144772417 -39516245 + (CA)n Simple_repeat Simple_repeat 2 35 0 201 39 0 0 chr4 144773218 144773244 -39515418 + (TG)n Simple_repeat Simple_repeat 1 26 0 401 220 107 7 chr4 144773562 144773712 -39514950 - MER103 DNA DNA 0 166 2 2080 87 33 4 chr4 144774179 144774488 -39514174 - AluSx SINE Alu 0 317 1 705 202 0 0 chr4 144774971 144775085 -39513577 - FLAM_A SINE Alu -19 114 1 296 333 92 8 chr4 144775360 144775480 -39513182 + MER5A DNA MER1_type 27 156 -33 2435 76 3 0 chr4 144775683 144775987 -39512675 + AluY SINE Alu 2 306 -5 219 69 0 0 chr4 144776180 144776209 -39512453 + (TC)n Simple_repeat Simple_repeat 2 30 0 6087 153 17 27 chr4 144776237 144777927 -39510735 - L1PB1 LINE L1 -7 6144 4439 2465 57 7 3 chr4 144777927 144778227 -39510435 - AluY SINE Alu -10 301 1 6087 153 17 27 chr4 144778227 144778240 -39510422 - L1PB1 LINE L1 -1712 4439 4427 342 45 0 0 chr4 144778240 144778284 -39510378 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 2196 92 3 3 chr4 144778286 144778570 -39510092 - AluY SINE Alu -27 284 1 6087 153 17 27 chr4 144778570 144779132 -39509530 - L1PB1 LINE L1 -1725 4426 3904 609 270 6 28 chr4 144779137 144779315 -39509347 + MER5B DNA MER1_type 4 177 -1 188 262 0 0 chr4 144780480 144780522 -39508140 - L2 LINE L2 -18 3254 3213 1707 176 68 29 chr4 144781186 144781567 -39507095 - MSTD LTR MaLR 0 396 1 4164 190 26 62 chr4 144782528 144783830 -39504832 + L1MB4 LINE L1 4150 5388 -818 2478 70 0 0 chr4 144783830 144784128 -39504534 + AluY SINE Alu 1 298 -13 4164 190 26 62 chr4 144784128 144784198 -39504464 + L1MB4 LINE L1 5388 5459 -747 1160 119 27 18 chr4 144784198 144784415 -39504247 + L1MC1 LINE L1 6113 6333 0 584 287 87 7 chr4 144784477 144784777 -39503885 + L1M4 LINE L1 2366 2689 -3457 278 210 148 0 chr4 144784791 144784872 -39503790 - L1M4 LINE L1 -1513 4633 4541 278 194 56 0 chr4 144784904 144784976 -39503686 + L1M4 LINE L1 2721 2796 -3350 1653 197 68 34 chr4 144784976 144785418 -39503244 - LTR2B LTR ERV1 0 490 34 404 206 24 24 chr4 144785452 144785617 -39503045 + L1M4 LINE L1 2808 2972 -3174 2372 156 43 0 chr4 144785623 144786060 -39502602 + L1MB4 LINE L1 5719 6174 -6 622 211 13 19 chr4 144786178 144786334 -39502328 + L1ME3 LINE L1 69 223 -6319 539 144 0 10 chr4 144786659 144786756 -39501906 + MER4A LTR ERV1 3 98 -566 1762 123 3 77 chr4 144786756 144787129 -39501533 + MER4A LTR ERV1 261 664 0 1350 176 14 0 chr4 144787634 144787850 -39500812 + AluJb SINE Alu 84 302 -10 926 231 79 30 chr4 144787888 144788003 -39500659 + L1ME3 LINE L1 4917 5025 -1619 1752 155 63 30 chr4 144788003 144788365 -39500297 + THE1C LTR MaLR 2 375 0 926 231 79 30 chr4 144788365 144788509 -39500153 + L1ME3 LINE L1 5025 5160 -1484 192 77 0 0 chr4 144788509 144788535 -39500127 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 926 231 79 30 chr4 144788535 144788680 -39499982 + L1ME3 LINE L1 5160 5342 -1302 566 268 29 21 chr4 144788744 144789024 -39499638 + L1ME3 LINE L1 5480 5761 -883 207 139 0 0 chr4 144789030 144789066 -39499596 + (TA)n Simple_repeat Simple_repeat 2 37 0 421 290 22 0 chr4 144789066 144789297 -39499365 + L1ME3 LINE L1 5762 5997 -665 5190 144 30 26 chr4 144789301 144789552 -39499110 + L1PA16 LINE L1 4795 5044 -1122 2260 97 10 7 chr4 144789552 144789851 -39498811 + AluSq SINE Alu 1 300 -13 2298 75 3 0 chr4 144789853 144790156 -39498506 + AluY SINE Alu 1 304 0 5190 144 30 26 chr4 144790156 144790448 -39498214 + L1PA16 LINE L1 5044 5334 -832 1606 161 20 59 chr4 144790448 144790752 -39497910 + AluJo SINE Alu 1 292 -20 5190 144 30 26 chr4 144790752 144791555 -39497107 + L1PA16 LINE L1 5334 6151 -15 865 255 117 50 chr4 144791543 144792005 -39496657 + L1ME3 LINE L1 5966 6458 -202 * 235 275 11 66 chr4 144792084 144792175 -39496487 + MER5A DNA MER1_type 75 160 -29 203 261 0 62 chr4 144792121 144792186 -39496476 - MER5A DNA MER1_type -99 90 30 * 216 0 0 0 chr4 144792585 144792609 -39496053 + (T)n Simple_repeat Simple_repeat 1 24 0 3128 25 0 28 chr4 144792651 144793010 -39495652 - SVA Other Other 0 1386 1038 2702 128 2 14 chr4 144893010 144893082 -39395580 + L1PB1 LINE L1 5710 5781 -370 563 75 0 37 chr4 144893082 144893189 -39395473 + (TA)n Simple_repeat Simple_repeat 2 104 0 2702 128 2 14 chr4 144893189 144893562 -39395100 + L1PB1 LINE L1 5781 6150 -1 533 189 8 90 chr4 144893562 144893684 -39394978 - MER2 DNA MER2_type -232 113 2 1236 252 87 44 chr4 144893779 144894431 -39394231 + L1MC4a LINE L1 5211 5398 -748 2213 123 0 3 chr4 144895032 144895340 -39393322 + AluSx SINE Alu 1 307 -5 216 214 23 168 chr4 144895340 144895513 -39393149 + MIR SINE MIR 115 262 0 200 280 0 67 chr4 144896209 144896284 -39392378 - L2 LINE L2 -4 3309 3240 215 351 134 29 chr4 144896736 144896907 -39391755 + L2 LINE L2 3070 3258 -14 405 369 58 41 chr4 144897113 144897506 -39391156 - L2 LINE L2 -775 2539 2140 241 326 135 0 chr4 144897786 144897875 -39390787 + L2 LINE L2 3169 3269 -3 374 325 72 36 chr4 144898048 144898242 -39390420 + MIR SINE MIR 1 201 -61 2357 86 10 0 chr4 144899602 144899903 -39388759 - AluSq SINE Alu -9 304 1 1574 201 3 27 chr4 144900391 144900684 -39387978 - AluJo SINE Alu -26 286 1 2092 126 7 0 chr4 144901915 144902208 -39386454 - AluSx SINE Alu -17 295 1 1770 87 4 4 chr4 144904094 144904323 -39384339 - AluSq SINE Alu -84 229 1 1615 169 29 21 chr4 144904804 144905119 -39383543 + AluSx SINE Alu 1 317 0 25 51 0 0 chr4 144905553 144905592 -39383070 + AT_rich Low_complexity Low_complexity 1 39 0 279 204 0 0 chr4 144905593 144905642 -39383020 - FLAM SINE Alu -9 124 76 710 179 8 0 chr4 144905644 144905767 -39382895 - FLAM_A SINE Alu -8 125 2 2084 130 3 0 chr4 144907476 144907769 -39380893 + AluSq SINE Alu 3 296 -17 1472 145 63 76 chr4 144908165 144908206 -39380456 - THE1C LTR MaLR 0 375 335 2071 120 27 3 chr4 144908206 144908506 -39380156 + AluSq SINE Alu 1 307 -6 1472 145 63 76 chr4 144908506 144908844 -39379818 - THE1C LTR MaLR -40 335 1 21 36 0 0 chr4 144909708 144909736 -39378926 + AT_rich Low_complexity Low_complexity 1 28 0 313 281 38 91 chr4 144911277 144911486 -39377176 - MIR SINE MIR -55 207 9 2389 104 0 0 chr4 144911859 144912168 -39376494 + AluSc SINE Alu 1 309 0 254 337 86 12 chr4 144914603 144914766 -39373896 + MIR SINE MIR 82 256 -6 409 272 96 16 chr4 144914786 144914911 -39373751 - L2 LINE L2 -4 3309 3175 453 304 156 42 chr4 144915434 144915819 -39372843 + L1MC4 LINE L1 7605 8033 -9 398 141 42 0 chr4 144916010 144916081 -39372581 - MLT1A1 LTR MaLR 0 365 292 385 258 33 129 chr4 144916077 144916348 -39372314 + MLT1F1 LTR MaLR 67 311 -256 * 332 261 17 26 chr4 144916500 144916615 -39372047 - MLT1A1 LTR MaLR -79 311 198 364 307 29 22 chr4 144917174 144917311 -39371351 + L2 LINE L2 3176 3313 0 190 300 100 14 chr4 144917451 144917521 -39371141 - MIR3 SINE MIR -125 83 8 30 27 0 0 chr4 144917541 144917578 -39371084 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr4 144917789 144917810 -39370852 + AT_rich Low_complexity Low_complexity 1 21 0 230 0 33 0 chr4 144919656 144919686 -39368976 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2279 104 0 7 chr4 144921101 144921400 -39367262 + AluSg1 SINE Alu 1 297 -12 27 0 0 0 chr4 144921773 144921800 -39366862 + AT_rich Low_complexity Low_complexity 1 27 0 724 168 8 15 chr4 144921922 144922053 -39366609 + FLAM_A SINE Alu 1 130 -3 439 279 63 6 chr4 144922094 144922252 -39366410 - MIR SINE MIR 0 262 96 931 304 61 60 chr4 144922424 144922969 -39365693 + L2 LINE L2 2492 3060 -253 2386 71 3 3 chr4 144922969 144923264 -39365398 + AluSc SINE Alu 1 295 -14 931 304 61 60 chr4 144923264 144923497 -39365165 + L2 LINE L2 3060 3291 -22 628 244 70 12 chr4 144925092 144925334 -39363328 + MIR SINE MIR 4 259 -3 21 0 0 0 chr4 144925509 144925530 -39363132 + AT_rich Low_complexity Low_complexity 1 21 0 209 297 50 30 chr4 144926307 144926408 -39362254 - MIR SINE MIR -69 193 91 22 70 0 0 chr4 144926724 144926767 -39361895 + AT_rich Low_complexity Low_complexity 1 43 0 623 218 100 0 chr4 144927271 144927441 -39361221 + MIR SINE MIR 76 262 0 9676 27 3 18 chr4 144927445 144929471 -39359191 - L1PA3 LINE L1 0 6155 4165 207 0 0 0 chr4 144929922 144929945 -39358717 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 2200 97 0 58 chr4 144930435 144930764 -39357898 + AluSg SINE Alu 1 310 0 225 233 279 23 chr4 144931276 144931362 -39357300 - L2 LINE L2 -1 3271 3164 278 304 12 31 chr4 144932041 144932202 -39356460 - L2 LINE L2 -1006 2308 2151 608 285 22 65 chr4 144932214 144932491 -39356171 - L2 LINE L2 -615 2699 2435 1284 164 9 0 chr4 144932496 144932727 -39355935 - MLT1C LTR MaLR -231 236 4 1291 210 18 18 chr4 144932729 144933015 -39355647 - L2 LINE L2 -893 2421 2136 197 291 134 47 chr4 144933648 144933775 -39354887 + L2 LINE L2 2920 3057 -215 341 222 0 88 chr4 144933819 144934013 -39354649 + (CATAC)n Simple_repeat Simple_repeat 3 179 0 516 225 104 56 chr4 144936395 144936626 -39352036 - MLT1K LTR MaLR -8 580 339 298 267 23 0 chr4 144936771 144936857 -39351805 - MLT1K LTR MaLR -455 133 46 36 53 0 0 chr4 144937608 144937665 -39350997 + AT_rich Low_complexity Low_complexity 1 57 0 222 193 0 0 chr4 144937994 144938051 -39350611 + (TATG)n Simple_repeat Simple_repeat 2 58 0 417 254 36 93 chr4 144938640 144938833 -39349829 + MIR SINE MIR 35 216 -46 225 274 128 8 chr4 144939778 144939895 -39348767 - L2 LINE L2 -1033 2281 2151 243 300 20 10 chr4 144940388 144940488 -39348174 - MIR SINE MIR -71 191 91 360 363 25 21 chr4 144941896 144942136 -39346526 + MIR SINE MIR 8 248 -14 2423 62 16 20 chr4 144942220 144942524 -39346138 + AluY SINE Alu 1 303 -8 343 102 85 0 chr4 144943256 144943315 -39345347 + L1PA13 LINE L1 6096 6159 -4 537 304 115 5 chr4 144944007 144944198 -39344464 + MIR SINE MIR 50 261 -1 24 32 0 0 chr4 144944333 144944364 -39344298 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr4 144946737 144946765 -39341897 + AT_rich Low_complexity Low_complexity 1 28 0 180 227 106 0 chr4 144946907 144946973 -39341689 - L3 LINE CR1 -585 992 920 281 256 101 85 chr4 144947823 144947952 -39340710 - MIR SINE MIR -6 256 126 546 326 81 50 chr4 144948983 144949244 -39339418 - L2 LINE L2 -1 3271 3003 1982 260 91 32 chr4 144950267 144951224 -39337438 + L2 LINE L2 2273 3309 -4 321 273 9 9 chr4 144952388 144952498 -39336164 + L1M4 LINE L1 4501 4610 -1536 521 315 76 43 chr4 144952518 144952886 -39335776 + L1M4 LINE L1 4672 5051 -1095 237 255 20 0 chr4 144952935 144952986 -39335676 - MER2 DNA MER2_type -14 331 280 598 123 9 26 chr4 144953024 144953138 -39335524 - MER2 DNA MER2_type -139 206 95 12751 201 54 19 chr4 144953152 144957422 -39331240 + L1P5 LINE L1 6 4722 -2145 2173 123 0 3 chr4 144957422 144957723 -39330939 + AluSx SINE Alu 1 300 -12 12751 201 54 19 chr4 144957723 144959577 -39329085 + L1P5 LINE L1 4722 6510 -357 739 196 76 0 chr4 144959748 144959906 -39328756 - MLT1B LTR MaLR -201 189 20 617 213 43 0 chr4 144959932 144960073 -39328589 + MLT1F1 LTR MaLR 421 567 0 1859 184 42 21 chr4 144960120 144960598 -39328064 - Looper DNA T2_type -125 1433 946 1858 171 3 14 chr4 144961295 144961639 -39327023 - MER47A DNA MER2_type -1 365 26 588 282 102 14 chr4 144963639 144963855 -39324807 + MIR SINE MIR 12 246 -16 1873 154 3 35 chr4 144964241 144964553 -39324109 + AluJo SINE Alu 1 302 -10 25 51 0 0 chr4 144964604 144964643 -39324019 + AT_rich Low_complexity Low_complexity 1 39 0 198 0 0 0 chr4 144965592 144965614 -39323048 + (A)n Simple_repeat Simple_repeat 1 22 0 617 185 30 0 chr4 144966543 144966678 -39321984 - MER3 DNA MER1_type -70 139 1 1066 128 7 0 chr4 144967025 144967174 -39321488 + AluSq/x SINE Alu 1 150 -162 1209 88 0 0 chr4 144967305 144967453 -39321209 + AluSp SINE Alu 152 299 -14 789 248 171 10 chr4 144967473 144967981 -39320681 + L1ME2 LINE L1 5479 6058 -106 1860 157 35 26 chr4 144968437 144968782 -39319880 + MER61C LTR ERV1 86 433 -1 628 198 0 84 chr4 144968799 144968966 -39319696 + MER61C-int LTR ERV1 18 170 -5047 1064 147 3 134 chr4 144969034 144969348 -39319314 + MER61C-int LTR ERV1 182 454 -4763 2981 186 86 67 chr4 144969366 144970136 -39318526 + MER61C-int LTR ERV1 413 1128 -4089 2001 109 64 0 chr4 144970136 144970419 -39318243 - AluSp SINE Alu -12 301 1 2981 186 86 67 chr4 144970419 144970943 -39317719 + MER61C-int LTR ERV1 1128 1640 -3577 * 4858 100 29 16 chr4 144970928 144971758 -39316904 + MER61C-int LTR ERV1 1978 2818 -2399 1957 154 0 3 chr4 144971935 144972233 -39316429 + AluJo SINE Alu 1 297 -15 947 221 0 0 chr4 144972233 144972396 -39316266 + AluJb SINE Alu 134 296 -16 1302 156 165 40 chr4 144972396 144972885 -39315777 - Charlie1 DNA MER1_type -50 2711 5 2305 235 107 25 chr4 144972958 144973745 -39314917 + L1MB7 LINE L1 5254 6104 -80 220 290 113 48 chr4 144975639 144975763 -39312899 - MER5B DNA MER1_type -45 133 2 605 287 61 6 chr4 144975789 144975970 -39312692 + MIR SINE MIR 23 213 -49 987 212 98 33 chr4 144976038 144976269 -39312393 + MER58B DNA MER1_type 26 279 -2141 1807 124 0 33 chr4 144976269 144976542 -39312120 + AluY SINE Alu 35 298 -13 987 212 98 33 chr4 144976542 144976584 -39312078 + MER58B DNA MER1_type 279 317 -24 767 218 13 53 chr4 144977414 144977639 -39311023 + Charlie8 DNA MER1_type 33 248 -2169 372 341 73 9 chr4 144978060 144978280 -39310382 - MIR SINE MIR -2 260 27 188 385 12 12 chr4 144979194 144979277 -39309385 + L2 LINE L2 2965 3047 -225 238 296 102 0 chr4 144981400 144981488 -39307174 - MIR3 SINE MIR -40 168 72 1958 148 3 10 chr4 144981831 144982142 -39306520 + AluSx SINE Alu 1 309 -3 1403 176 0 100 chr4 144982724 144983043 -39305619 + AluJb SINE Alu 1 287 -25 2268 104 0 3 chr4 144983054 144983361 -39305301 - AluSx SINE Alu -6 306 1 23 78 0 0 chr4 144983429 144983480 -39305182 + AT_rich Low_complexity Low_complexity 1 51 0 247 343 84 0 chr4 144984007 144984150 -39304512 - MIR SINE MIR -87 175 21 469 322 87 14 chr4 144984210 144984262 -39304400 - MIR SINE MIR -14 248 201 1583 162 45 27 chr4 144984262 144984595 -39304067 + MER44D DNA MER2_type 1 609 0 469 322 87 14 chr4 144984595 144984750 -39303912 - MIR SINE MIR -61 201 26 245 256 164 72 chr4 144984980 144985112 -39303550 + MIR SINE MIR 22 179 -83 1583 174 50 7 chr4 144985112 144985393 -39303269 + AluJo SINE Alu 1 293 -19 245 256 164 72 chr4 144985393 144985455 -39303207 + MIR SINE MIR 179 234 -28 244 284 129 26 chr4 144987939 144988055 -39300607 + MIR SINE MIR 61 188 -74 296 228 54 54 chr4 144988984 144989076 -39299586 - L2 LINE L2 0 3313 3222 1602 197 116 3 chr4 144989094 144989475 -39299187 + MER63B DNA MER1_type 12 435 -1 4121 260 157 31 chr4 144989479 144991381 -39297281 - L2 LINE L2 -141 3172 1039 186 246 92 31 chr4 144991639 144991704 -39296958 - MIR SINE MIR -7 255 187 188 355 149 8 chr4 144991740 144991861 -39296801 + MIR3 SINE MIR 36 173 -35 226 333 67 13 chr4 144991894 144991969 -39296693 + L2 LINE L2 3126 3204 -68 230 325 62 12 chr4 144992027 144992107 -39296555 + L2 LINE L2 3122 3205 -67 206 380 93 9 chr4 144992163 144992271 -39296391 + L2 LINE L2 3122 3238 -34 2316 92 34 53 chr4 144992402 144992582 -39296080 - L1MA5A LINE L1 -3 6294 6112 1858 140 36 4 chr4 144992582 144992861 -39295801 - AluJb SINE Alu -24 288 1 2316 92 34 53 chr4 144992861 144993094 -39295568 - L1MA5A LINE L1 -185 6112 5889 22 0 0 0 chr4 144996010 144996032 -39292630 + AT_rich Low_complexity Low_complexity 1 22 0 1805 142 59 9 chr4 144996545 144996868 -39291794 - MER61C LTR ERV1 -10 424 86 11490 108 42 6 chr4 144996885 144998702 -39289960 - MER61C-int LTR ERV1 0 5217 3335 1097 99 0 0 chr4 144998702 144998844 -39289818 - AluSp/q SINE Alu -8 305 164 549 131 30 10 chr4 144998845 144998944 -39289718 - MER41-int LTR ERV1 -922 5024 4924 508 314 37 11 chr4 144999101 144999289 -39289373 + MIR SINE MIR 10 202 -60 214 272 98 54 chr4 144999372 144999568 -39289094 - MIR SINE MIR -51 211 3 2168 82 23 36 chr4 144999939 145000243 -39288419 - AluSg SINE Alu -10 300 1 206 175 25 0 chr4 145000256 145000296 -39288366 + MIR SINE MIR 158 198 -64 1058 170 5 10 chr4 145000304 145000498 -39288164 - MER20 DNA MER1_type 0 219 27 258 402 31 8 chr4 145000546 145000673 -39287989 + L2 LINE L2 3143 3272 0 670 287 16 61 chr4 145000674 145000830 -39287832 - MIR SINE MIR -3 259 116 6270 41 0 3 chr4 145000830 145001581 -39287081 + L1PA6 LINE L1 5395 6143 -11 670 287 16 61 chr4 145001581 145001671 -39286991 - MIR SINE MIR -146 116 24 299 224 92 13 chr4 145002960 145003036 -39285626 - MIR3 SINE MIR -12 196 115 225 146 0 0 chr4 145005432 145005480 -39283182 + (T)n Simple_repeat Simple_repeat 1 48 0 1821 138 28 3 chr4 145006075 145006357 -39282305 - AluSx SINE Alu -23 289 1 233 333 44 53 chr4 145007611 145007725 -39280937 - L2 LINE L2 0 3272 3160 751 139 139 0 chr4 145008414 145008551 -39280111 - FRAM SINE Alu -8 168 13 21 0 0 0 chr4 145008796 145008817 -39279845 + AT_rich Low_complexity Low_complexity 1 21 0 238 287 103 38 chr4 145008980 145009140 -39279522 - MER5A DNA MER1_type -5 184 1 200 190 52 0 chr4 145009219 145009277 -39279385 + T-rich Low_complexity Low_complexity 3 63 0 2358 174 49 20 chr4 145010710 145011198 -39277464 - MLT1D LTR MaLR -3 502 1 362 320 121 65 chr4 145011513 145011744 -39276918 + L2 LINE L2 3029 3272 0 1905 130 67 0 chr4 145012714 145012998 -39275664 + MER1B DNA MER1_type 37 339 0 1111 160 42 14 chr4 145014155 145014368 -39274294 + MER20 DNA MER1_type 1 219 0 318 371 28 17 chr4 145014497 145014675 -39273987 - MER5A DNA MER1_type -3 186 7 219 154 0 0 chr4 145014867 145014906 -39273756 + (TA)n Simple_repeat Simple_repeat 1 39 0 273 348 45 0 chr4 145015953 145016065 -39272597 + MIR3 SINE MIR 85 201 -7 208 225 0 0 chr4 145016748 145016788 -39271874 - L2 LINE L2 -9 3304 3265 313 260 63 24 chr4 145020552 145020679 -39267983 + MIR SINE MIR 120 251 -11 633 335 43 50 chr4 145021098 145021474 -39267188 - L3b LINE CR1 -31 1552 1180 1773 112 0 23 chr4 145022799 145023057 -39265605 + AluSx SINE Alu 43 294 -18 23 0 0 0 chr4 145023687 145023710 -39264952 + AT_rich Low_complexity Low_complexity 1 23 0 206 363 44 26 chr4 145025604 145025717 -39262945 - L2 LINE L2 -181 3091 2977 186 373 150 0 chr4 145025793 145025946 -39262716 - L2 LINE L2 -461 2853 2678 214 250 167 33 chr4 145026087 145026207 -39262455 - L2 LINE L2 -828 2486 2351 * 514 270 61 65 chr4 145026200 145026430 -39262232 - L2 LINE L2 -1 3312 3084 378 314 157 22 chr4 145026410 145026633 -39262029 - L2 LINE L2 -938 2376 2124 * 291 281 37 0 chr4 145027684 145027766 -39260896 - MIR SINE MIR -10 252 168 557 297 42 49 chr4 145027894 145028157 -39260505 - MIR SINE MIR 0 262 2 1615 154 16 79 chr4 145028871 145029189 -39259473 + AluJb SINE Alu 5 302 -10 21 71 0 0 chr4 145032017 145032059 -39256603 + AT_rich Low_complexity Low_complexity 1 42 0 204 220 20 20 chr4 145032406 145032456 -39256206 - L2 LINE L2 0 3313 3264 22 0 0 30 chr4 145033253 145033272 -39255390 + AT_rich Low_complexity Low_complexity 1 20 -12 2031 115 0 13 chr4 145033272 145033576 -39255086 + AluSq SINE Alu 1 300 -13 22 0 0 30 chr4 145033576 145033589 -39255073 + AT_rich Low_complexity Low_complexity 20 32 0 261 0 0 0 chr4 145034005 145034034 -39254628 + (TTG)n Simple_repeat Simple_repeat 2 30 0 327 280 122 9 chr4 145034636 145034743 -39253919 - MIR SINE MIR -114 148 30 323 333 143 0 chr4 145034766 145034934 -39253728 + MIR SINE MIR 68 259 -3 275 301 60 0 chr4 145035612 145035695 -39252967 - MIR SINE MIR -152 110 23 1798 183 7 10 chr4 145036798 145037104 -39251558 + AluJo SINE Alu 1 305 -7 300 258 115 29 chr4 145037710 145037895 -39250767 - L1P4 LINE L1 -526 5595 5432 1821 121 22 16 chr4 145037898 145038220 -39250442 - L1MB3 LINE L1 -2 6181 5858 363 293 135 30 chr4 145038307 145038789 -39249873 - L2 LINE L2 0 3313 2766 2385 99 0 0 chr4 145038793 145039105 -39249557 - AluSx SINE Alu 0 312 1 774 167 7 21 chr4 145039717 145039861 -39248801 + MER33 DNA MER1_type 2 143 -181 206 95 24 0 chr4 145039861 145039903 -39248759 + (TA)n Simple_repeat Simple_repeat 1 43 0 515 173 15 23 chr4 145039944 145040077 -39248585 + MER33 DNA MER1_type 148 279 -45 279 363 123 47 chr4 145041018 145041442 -39247220 + L2 LINE L2 2811 3266 -6 25 0 0 0 chr4 145042028 145042053 -39246609 + AT_rich Low_complexity Low_complexity 1 25 0 483 185 67 17 chr4 145043285 145043404 -39245258 - MER94 DNA DNA 0 134 10 26 0 0 0 chr4 145043621 145043647 -39245015 + AT_rich Low_complexity Low_complexity 1 26 0 360 270 17 0 chr4 145044428 145044543 -39244119 + L1MB8 LINE L1 6060 6176 -2 342 196 205 73 chr4 145044674 145044843 -39243819 - L1MC5 LINE L1 -57 7904 7759 189 0 0 0 chr4 145044843 145044864 -39243798 + (TA)n Simple_repeat Simple_repeat 1 21 0 342 196 205 73 chr4 145044864 145045021 -39243641 - L1MC5 LINE L1 -202 7759 7535 676 89 10 0 chr4 145045216 145045317 -39243345 + L1PA15 LINE L1 6064 6165 0 389 204 42 58 chr4 145045333 145045427 -39243235 + LTR29 LTR ERV1 318 412 -232 2100 107 0 39 chr4 145045427 145045737 -39242925 - AluY SINE Alu -13 298 1 389 204 42 58 chr4 145045737 145045853 -39242809 + LTR29 LTR ERV1 412 568 -76 13832 114 40 52 chr4 145046080 145046499 -39242163 + Tigger1 DNA MER2_type 2 424 -1994 1715 161 4 4 chr4 145046499 145046760 -39241902 + AluJb SINE Alu 33 293 -19 13832 114 40 52 chr4 145046760 145048786 -39239876 + Tigger1 DNA MER2_type 424 2418 0 247 323 23 15 chr4 145049470 145049600 -39239062 - MLT1L LTR MaLR -2 613 483 1980 142 0 10 chr4 145049631 145049941 -39238721 + AluSx SINE Alu 2 308 -4 1840 172 52 7 chr4 145050657 145051009 -39237653 - MER61C LTR ERV1 0 434 1 631 200 46 41 chr4 145051445 145051640 -39237022 + L1ME2 LINE L1 5135 5330 -816 965 218 66 41 chr4 145051644 145051961 -39236701 + L1MC4a LINE L1 5697 6021 -1787 4328 203 76 48 chr4 145051968 145053205 -39235457 + L1MC4a LINE L1 6537 7808 0 2030 188 113 59 chr4 145053253 145053896 -39234766 + L1ME2 LINE L1 5369 6046 -118 788 172 42 57 chr4 145154649 145154841 -39133821 + MER5A DNA MER1_type 1 189 0 794 233 41 96 chr4 145155581 145155852 -39132810 - MIR SINE MIR 0 262 7 243 146 0 0 chr4 145156661 145156702 -39131960 + (TG)n Simple_repeat Simple_repeat 2 42 0 473 278 124 12 chr4 145157029 145157198 -39131464 + MIR3 SINE MIR 16 203 -5 206 292 46 15 chr4 145157668 145157733 -39130929 - L2 LINE L2 -12 3260 3194 488 100 12 12 chr4 145160041 145160121 -39128541 + MADE1 DNA Mariner 1 80 0 394 192 131 0 chr4 145160232 145160331 -39128331 - MER58C DNA MER1_type -42 173 62 252 0 0 0 chr4 145160332 145160360 -39128302 + (A)n Simple_repeat Simple_repeat 1 28 0 455 154 0 0 chr4 145160448 145160526 -39128136 + AluJ/FRAM SINE Alu 222 299 -13 320 232 12 49 chr4 145160574 145160656 -39128006 + MIR3 SINE MIR 91 169 -39 1568 157 27 23 chr4 145160974 145161274 -39127388 + AluJo SINE Alu 1 301 -11 220 300 33 44 chr4 145161462 145161552 -39127110 + MIR3 SINE MIR 4 92 -116 195 351 39 0 chr4 145161903 145161980 -39126682 + MIR SINE MIR 1 80 -182 312 268 12 12 chr4 145162610 145162692 -39125970 + MIR3 SINE MIR 124 205 -3 217 196 39 0 chr4 145162848 145162899 -39125763 - L2 LINE L2 0 3313 3261 2444 60 0 3 chr4 145165059 145165358 -39123304 + AluY SINE Alu 1 298 -13 2211 186 14 0 chr4 145165586 145165946 -39122716 - MLT1A1 LTR MaLR 0 365 1 2360 64 0 3 chr4 145166680 145166963 -39121699 + AluSc SINE Alu 22 303 -6 6683 183 56 5 chr4 145168102 145169432 -39119230 + Charlie1a DNA MER1_type 58 1455 0 505 286 37 77 chr4 145171428 145171701 -39116961 - MIR SINE MIR 0 262 1 2091 160 30 25 chr4 145173092 145173455 -39115207 - MLT1A1 LTR MaLR 0 365 1 30 0 0 0 chr4 145173570 145173600 -39115062 + AT_rich Low_complexity Low_complexity 1 30 0 633 259 23 55 chr4 145173708 145173928 -39114734 - MIR SINE MIR -3 259 47 180 111 0 0 chr4 145174380 145174407 -39114255 + (A)n Simple_repeat Simple_repeat 1 27 0 939 195 0 13 chr4 145174541 145174700 -39113962 - FRAM SINE Alu -9 157 1 21 0 0 0 chr4 145174826 145174847 -39113815 + AT_rich Low_complexity Low_complexity 1 21 0 275 100 100 0 chr4 145175221 145175271 -39113391 - MLT2A1 LTR ERVL 0 444 390 461 58 74 8 chr4 145175276 145175397 -39113265 + (TA)n Simple_repeat Simple_repeat 2 130 0 2845 88 25 8 chr4 145175397 145175793 -39112869 - MLT2A1 LTR ERVL -41 403 1 1604 130 81 23 chr4 145176492 145176671 -39111991 + AluJb SINE Alu 21 221 -91 240 35 0 0 chr4 145176671 145176700 -39111962 + (GGATG)n Simple_repeat Simple_repeat 3 31 0 1604 130 81 23 chr4 145176700 145176781 -39111881 + AluJb SINE Alu 221 296 -16 180 97 0 0 chr4 145177194 145177225 -39111437 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2067 115 3 3 chr4 145177228 145177515 -39111147 - AluSx SINE Alu -25 287 1 339 191 75 122 chr4 145178611 145178691 -39109971 - MIR SINE MIR 0 262 191 2421 78 0 7 chr4 145178691 145178998 -39109664 - AluSq SINE Alu -8 305 1 339 191 75 122 chr4 145178998 145179064 -39109598 - MIR SINE MIR -71 191 123 1612 93 0 0 chr4 145179631 145179835 -39108827 - AluY SINE Alu -107 204 1 402 204 0 45 chr4 145179842 145179930 -39108732 + L2 LINE L2 3229 3312 -1 439 260 24 24 chr4 145181832 145181955 -39106707 - MIR SINE MIR -75 187 65 29 60 0 0 chr4 145182489 145182539 -39106123 + AT_rich Low_complexity Low_complexity 1 50 0 777 181 42 72 chr4 145182803 145182996 -39105666 - MER20 DNA MER1_type -1 218 32 718 251 6 0 chr4 145183121 145183284 -39105378 - MIR SINE MIR -8 254 91 345 387 21 0 chr4 145183729 145183871 -39104791 - MIR3 SINE MIR -54 154 10 24 0 0 0 chr4 145183992 145184016 -39104646 + AT_rich Low_complexity Low_complexity 1 24 0 289 203 95 0 chr4 145184789 145184863 -39103799 + MLT1H LTR MaLR 20 100 -449 784 203 0 0 chr4 145185027 145185160 -39103502 + FLAM_A SINE Alu 1 133 0 703 145 17 22 chr4 145185164 145185343 -39103319 + GA-rich Low_complexity Low_complexity 1 178 0 384 140 0 0 chr4 145185343 145185400 -39103262 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 385 296 40 0 chr4 145185818 145185943 -39102719 + MIR SINE MIR 111 240 -22 215 260 0 0 chr4 145185966 145186016 -39102646 + (TAA)n Simple_repeat Simple_repeat 2 51 0 221 191 0 24 chr4 145186508 145186550 -39102112 + MIR SINE MIR 28 68 -194 2033 109 4 0 chr4 145186570 145186844 -39101818 + AluSg SINE Alu 16 290 -20 571 291 14 0 chr4 145186844 145186992 -39101670 + MIR SINE MIR 59 208 -54 578 167 117 128 chr4 145188505 145188685 -39099977 + MER5B DNA MER1_type 1 178 0 24 0 0 0 chr4 145189655 145189679 -39098983 + AT_rich Low_complexity Low_complexity 1 24 0 201 250 23 0 chr4 145190151 145190195 -39098467 + L2 LINE L2 3211 3255 -17 278 202 143 12 chr4 145193660 145193744 -39094918 - L2 LINE L2 -5 3267 3173 229 304 13 0 chr4 145194242 145194321 -39094341 - MLT1K LTR MaLR -8 580 501 1251 230 204 23 chr4 145195330 145195883 -39092779 + L2 LINE L2 2381 3040 -273 410 281 70 0 chr4 145195879 145195993 -39092669 + L2 LINE L2 3192 3313 0 * 202 277 36 36 chr4 145196467 145196550 -39092112 - MIR SINE MIR -104 158 76 189 374 0 35 chr4 145196656 145196771 -39091891 - MIR3 SINE MIR -86 122 12 294 158 18 18 chr4 145196791 145196848 -39091814 + L2 LINE L2 3256 3312 -1 263 345 61 18 chr4 145196877 145197042 -39091620 - MIR SINE MIR -49 213 42 2090 166 128 19 chr4 145197457 145197878 -39090784 + MLT1C LTR MaLR 1 467 0 2103 155 0 0 chr4 145198120 145198424 -39090238 + AluJb SINE Alu 1 304 -8 252 0 0 0 chr4 145199039 145199067 -39089595 + (CA)n Simple_repeat Simple_repeat 2 29 0 1763 173 84 45 chr4 145199930 145200142 -39088520 - MSTD LTR MaLR 0 396 161 2269 102 3 0 chr4 145200142 145200435 -39088227 + AluSp SINE Alu 1 294 -19 1763 173 84 45 chr4 145200435 145200603 -39088059 - MSTD LTR MaLR -235 161 1 6994 209 97 22 chr4 145200603 145202216 -39086446 - MSTD-int LTR MaLR 0 1735 2 1822 186 86 19 chr4 145202218 145202589 -39086073 - MSTD LTR MaLR 0 396 1 342 0 0 0 chr4 145202679 145202717 -39085945 + (A)n Simple_repeat Simple_repeat 1 38 0 488 125 12 12 chr4 145203020 145203100 -39085562 + MADE1 DNA Mariner 1 80 0 296 234 122 28 chr4 145203203 145203310 -39085352 - MER58C DNA MER1_type -37 178 62 252 0 0 0 chr4 145203311 145203339 -39085323 + (A)n Simple_repeat Simple_repeat 1 28 0 506 141 0 0 chr4 145203427 145203505 -39085157 + AluJ/FRAM SINE Alu 222 299 -13 537 217 100 28 chr4 145204062 145204242 -39084420 - L1ME4a LINE L1 -189 5932 5740 3513 65 7 7 chr4 145204294 145204742 -39083920 - LTR7 LTR ERV1 -2 448 1 2501 80 53 13 chr4 145204742 145205119 -39083543 - HERVH LTR ERV1 0 7713 7322 1401 116 18 36 chr4 145205117 145205341 -39083321 - HERVH LTR ERV1 -1894 5819 5600 * 4422 132 3 9 chr4 145205342 145206008 -39082654 - HERVH LTR ERV1 -2564 5149 4488 3483 109 0 6 chr4 145206010 145206515 -39082147 - HERVH LTR ERV1 -3720 3993 3492 * 21087 79 53 50 chr4 145206505 145209785 -39078877 - HERVH LTR ERV1 -4423 3290 1 1685 96 26 17 chr4 145209787 145210185 -39078477 - LTR7 LTR ERV1 -2 448 1 306 0 0 0 chr4 145210461 145210495 -39078167 + (TG)n Simple_repeat Simple_repeat 1 34 0 1944 134 0 14 chr4 145210496 145210816 -39077846 - AluJb SINE Alu 0 312 1 392 274 153 17 chr4 145210898 145211139 -39077523 - L1MC5 LINE L1 -36 7925 7652 651 200 81 49 chr4 145215576 145215697 -39072965 + MIR SINE MIR 3 146 -116 1792 90 93 111 chr4 145215697 145215750 -39072912 - MER44D DNA MER2_type -1882 609 557 2296 101 0 0 chr4 145215750 145216047 -39072615 + AluSq SINE Alu 1 297 -16 1792 90 93 111 chr4 145216047 145216337 -39072325 - MER44D DNA MER2_type -1934 557 2 651 200 81 49 chr4 145216337 145216428 -39072234 + MIR SINE MIR 146 233 -29 464 308 81 14 chr4 145216443 145216654 -39072008 - MIR SINE MIR -14 248 24 506 204 111 62 chr4 145218344 145218506 -39070156 + MER91B DNA MER1_type 1 170 -20 459 204 9 26 chr4 145220056 145220169 -39068493 + L1MC5 LINE L1 7751 7861 -100 554 198 80 91 chr4 145221914 145222101 -39066561 + LTR16A1 LTR ERVL 273 457 0 1845 143 7 0 chr4 145222492 145222820 -39065842 + AluJb SINE Alu 8 337 0 232 325 67 33 chr4 145223738 145223858 -39064804 + MIR SINE MIR 132 255 -7 2194 91 0 3 chr4 145224293 145224609 -39064053 + AluY SINE Alu 10 311 0 2275 98 0 0 chr4 145224622 145224946 -39063716 + AluSx SINE Alu 1 312 0 2426 94 0 0 chr4 145224959 145225266 -39063396 + AluSx SINE Alu 1 307 -5 195 288 188 0 chr4 145226033 145226113 -39062549 - MIR SINE MIR -63 145 51 2239 114 0 0 chr4 145228098 145228397 -39060265 - AluSq SINE Alu -14 299 1 1583 217 124 43 chr4 145228896 145229357 -39059305 + MLT1D LTR MaLR 2 499 -6 321 172 0 0 chr4 145229358 145229422 -39059240 + (CAGA)n Simple_repeat Simple_repeat 1 64 0 27 0 0 0 chr4 145229875 145229902 -39058760 + AT_rich Low_complexity Low_complexity 1 27 0 880 147 7 15 chr4 145230698 145230834 -39057828 - MER20 DNA MER1_type 0 219 85 996 163 0 17 chr4 145230838 145231010 -39057652 - FAM SINE Alu -7 42 1 358 221 11 74 chr4 145231018 145231113 -39057549 - MER20 DNA MER1_type -128 91 3 815 184 14 0 chr4 145231527 145231710 -39056952 + FRAM SINE Alu 5 189 0 1384 183 38 31 chr4 145231790 145232079 -39056583 + AluJb SINE Alu 21 311 -1 221 305 118 82 chr4 145232688 145233105 -39055557 + L2 LINE L2 2827 3258 -14 429 54 0 0 chr4 145234450 145234506 -39054156 + (TG)n Simple_repeat Simple_repeat 1 56 0 416 155 0 0 chr4 145234534 145234592 -39054070 + AluJ/FLAM SINE Alu 9 66 -246 1864 153 3 32 chr4 145234683 145234997 -39053665 + AluJo SINE Alu 1 305 -7 451 236 91 0 chr4 145235537 145235647 -39053015 + L2 LINE L2 3194 3313 0 22 0 0 0 chr4 145238854 145238876 -39049786 + AT_rich Low_complexity Low_complexity 1 22 0 4433 150 49 33 chr4 145239197 145240198 -39048464 + L1MB7 LINE L1 5111 6126 -58 1453 112 36 5 chr4 145245186 145245410 -39043252 - L1MD3 LINE L1 0 7995 7765 24 32 0 0 chr4 145247144 145247175 -39041487 + AT_rich Low_complexity Low_complexity 1 31 0 1359 123 83 20 chr4 145247185 145247438 -39041224 + L1MB3 LINE L1 5914 6182 -1 316 284 12 0 chr4 145247820 145247901 -39040761 - MIR3 SINE MIR -5 203 122 447 35 0 0 chr4 145247903 145247960 -39040702 + (GA)n Simple_repeat Simple_repeat 2 58 0 238 301 190 25 chr4 145250849 145251012 -39037650 - MIR3 SINE MIR -18 190 1 270 241 71 27 chr4 145251354 145251466 -39037196 + L1ME4a LINE L1 5975 6091 -30 814 272 41 24 chr4 145251603 145251849 -39036813 - MIR SINE MIR -11 251 2 827 21 0 0 chr4 145251856 145251949 -39036713 - AluY SINE Alu -13 298 206 2180 118 0 7 chr4 145251996 145252302 -39036360 + AluSx SINE Alu 1 304 -8 474 292 53 6 chr4 145253837 145254008 -39034654 - MIR SINE MIR -64 198 20 185 180 0 16 chr4 145256291 145256352 -39032310 + (CCG)n Simple_repeat Simple_repeat 1 60 0 220 306 0 56 chr4 145256650 145256758 -39031904 + GA-rich Low_complexity Low_complexity 4 105 0 222 309 0 0 chr4 145256874 145256942 -39031720 + GA-rich Low_complexity Low_complexity 1 68 0 246 174 0 0 chr4 145257180 145257226 -39031436 + T-rich Low_complexity Low_complexity 1 46 0 377 110 14 0 chr4 145257450 145257523 -39031139 + (TC)n Simple_repeat Simple_repeat 2 75 0 255 61 0 0 chr4 145257575 145257608 -39031054 + (CA)n Simple_repeat Simple_repeat 2 34 0 1926 148 0 0 chr4 145259550 145259840 -39028822 + AluSx SINE Alu 1 290 -22 216 193 0 70 chr4 145260974 145261031 -39027631 + G-rich Low_complexity Low_complexity 3 55 0 25 0 0 28 chr4 145262070 145262086 -39026576 + AT_rich Low_complexity Low_complexity 1 16 -19 2262 106 27 0 chr4 145262086 145262387 -39026275 - AluSx SINE Alu -3 309 1 25 0 0 28 chr4 145262387 145262406 -39026256 + AT_rich Low_complexity Low_complexity 16 35 0 273 109 0 0 chr4 145263906 145263952 -39024710 + (TGG)n Simple_repeat Simple_repeat 3 48 0 243 305 109 8 chr4 145265278 145265406 -39023256 + MIR SINE MIR 2 142 -120 201 400 33 5 chr4 145265739 145265949 -39022713 + L2 LINE L2 2845 3060 -212 1026 232 68 134 chr4 145265951 145266728 -39021934 - L2 LINE L2 -70 3243 2514 232 354 56 30 chr4 145267202 145267400 -39021262 - L2 LINE L2 -668 2646 2444 664 280 84 40 chr4 145267877 145267952 -39020710 + L1ME3A LINE L1 5583 5653 -517 6227 176 79 40 chr4 145267952 145269038 -39019624 + Charlie1a DNA MER1_type 2 1155 -1606 1780 107 55 48 chr4 145269038 145269327 -39019335 + AluSx SINE Alu 1 291 -21 6227 176 79 40 chr4 145269327 145269636 -39019026 + Charlie1a DNA MER1_type 1155 1451 -4 664 280 84 40 chr4 145269636 145269931 -39018731 + L1ME3A LINE L1 5653 5969 -201 2918 85 3 3 chr4 145270629 145270993 -39017669 - THE1B LTR MaLR 0 364 1 316 306 27 18 chr4 145271753 145271864 -39016798 + L2 LINE L2 3111 3222 -50 192 77 0 0 chr4 145271887 145271913 -39016749 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 563 268 65 41 chr4 145271949 145272240 -39016422 - L3 LINE CR1 -279 1298 1001 275 243 48 19 chr4 145272315 145272418 -39016244 + HAL1b LINE L1 1236 1341 -7 25 31 0 0 chr4 145272438 145272470 -39016192 + AT_rich Low_complexity Low_complexity 1 32 0 256 282 0 14 chr4 145273023 145273094 -39015568 - L2 LINE L2 -92 3180 3111 386 202 41 80 chr4 145273594 145273770 -39014892 - MIR SINE MIR -65 143 5 591 187 111 70 chr4 145273935 145274106 -39014556 + MER5B DNA MER1_type 1 178 0 281 307 134 11 chr4 145274221 145274400 -39014262 - MIR SINE MIR -4 258 58 802 198 88 125 chr4 145274511 145274839 -39013823 - MER102a DNA MER1_type -11 319 4 1510 136 5 9 chr4 145275396 145275646 -39013016 + AluSx SINE Alu 64 312 0 480 199 76 23 chr4 145276253 145276384 -39012278 - MIR SINE MIR -24 238 101 1803 232 117 19 chr4 145276530 145276992 -39011670 + MLT1J LTR MaLR 5 511 0 951 134 0 4 chr4 145277307 145277523 -39011139 - AluJb SINE Alu -16 296 2 1090 183 28 33 chr4 145277593 145277806 -39010856 - MER20 DNA MER1_type -4 215 4 444 223 48 108 chr4 145279527 145279629 -39009033 - MER112 DNA MER1_type 0 260 170 1443 173 77 11 chr4 145279629 145279901 -39008761 + AluJb SINE Alu 5 294 -18 444 223 48 108 chr4 145279901 145279964 -39008698 - MER112 DNA MER1_type -90 170 105 213 175 0 0 chr4 145279992 145280032 -39008630 + CT-rich Low_complexity Low_complexity 2 41 0 339 65 0 0 chr4 145282075 145282121 -39006541 + (TG)n Simple_repeat Simple_repeat 1 46 0 970 254 165 12 chr4 145282583 145283096 -39005566 + L2 LINE L2 2703 3312 -1 1995 146 0 13 chr4 145283097 145283405 -39005257 - AluJb SINE Alu -8 304 1 2362 76 0 0 chr4 145284429 145284719 -39003943 - AluSg1 SINE Alu -19 290 1 285 100 0 0 chr4 145284724 145284774 -39003888 + (A)n Simple_repeat Simple_repeat 1 50 0 1872 150 7 26 chr4 145285744 145286050 -39002612 - AluJo SINE Alu -12 300 1 2607 177 76 93 chr4 145286225 145286965 -39001697 + LTR8A LTR ERV1 1 727 0 490 269 97 29 chr4 145287631 145287869 -39000793 - L1MC4a LINE L1 -1922 5886 5633 2009 127 10 13 chr4 145287943 145288242 -39000420 - AluSx SINE Alu -14 298 1 1969 138 0 36 chr4 145288870 145289175 -38999487 - AluSx SINE Alu -18 294 1 2045 126 0 0 chr4 145289447 145289777 -38998885 - AluSx SINE Alu 0 330 1 4203 151 50 7 chr4 145289816 145290492 -38998170 + MER44D DNA MER2_type 1 705 0 216 350 112 17 chr4 145290642 145290936 -38997726 - L2 LINE L2 -534 2780 2459 1176 150 84 40 chr4 145290977 145291203 -38997459 + MER46A DNA MER2_type 1 236 0 1369 261 92 15 chr4 145291229 145291556 -38997106 + LTR16C LTR ERVL 67 367 -124 270 0 0 0 chr4 145291556 145291586 -38997076 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 2222 93 0 53 chr4 145291591 145291913 -38996749 + AluSx SINE Alu 1 305 -7 1369 261 92 15 chr4 145291913 145291970 -38996692 + LTR16C LTR ERVL 370 487 -4 784 165 0 0 chr4 145292996 145293111 -38995551 - FLAM_A SINE Alu -20 122 8 436 214 97 35 chr4 145293992 145294137 -38994525 - L1ME3A LINE L1 -30 6140 5987 880 398 207 13 chr4 145294320 145294634 -38994028 - THE1C LTR MaLR 0 375 1 202 132 26 26 chr4 145294707 145294745 -38993917 - MIR SINE MIR -140 68 31 456 298 43 23 chr4 145295186 145295371 -38993291 + MIR SINE MIR 11 203 -59 922 262 74 10 chr4 145297917 145298226 -38990436 - MER46C DNA MER2_type -1 337 9 264 268 222 20 chr4 145301004 145301157 -38987505 - MIR3 SINE MIR -6 202 19 351 213 153 69 chr4 145301425 145301641 -38987021 - LTR33A LTR ERVL -220 303 70 329 296 83 0 chr4 145303822 145303930 -38984732 - MIR SINE MIR -69 193 77 773 265 86 64 chr4 145304301 145304769 -38983893 + LTR33 LTR ERVL 44 521 0 484 256 0 17 chr4 145304776 145304893 -38983769 - L2 LINE L2 -1 3312 3198 213 209 35 105 chr4 145305816 145305902 -38982760 + MIR SINE MIR 114 193 -69 204 40 0 0 chr4 145306251 145306276 -38982386 + (TTCTCC)n Simple_repeat Simple_repeat 6 30 0 186 189 0 0 chr4 145306478 145306515 -38982147 + GA-rich Low_complexity Low_complexity 1 37 0 199 329 29 0 chr4 145306878 145306948 -38981714 - L2 LINE L2 -54 3259 3188 273 314 0 0 chr4 145307268 145307354 -38981308 - Charlie8 DNA MER1_type -2236 181 96 3949 170 49 15 chr4 145307685 145308397 -38980265 + L1MB3 LINE L1 5448 6183 0 317 269 76 25 chr4 145308426 145308545 -38980117 - L3 LINE CR1 -239 1338 1214 1030 170 70 31 chr4 145310315 145310544 -38978118 + ORSL DNA AcHobo 33 270 -5 779 249 87 95 chr4 145310549 145310938 -38977724 + L2 LINE L2 2928 3313 0 443 315 158 29 chr4 145311530 145312006 -38976656 - MLT1K LTR MaLR -50 538 2 518 357 45 19 chr4 145314613 145314991 -38973671 - LTR16C LTR ERVL -32 459 72 184 369 157 31 chr4 145316201 145316773 -38971889 - L2 LINE L2 -346 2968 2325 2235 120 7 0 chr4 145316972 145317281 -38971381 - AluY SINE Alu 0 311 1 2066 230 69 0 chr4 145317284 145317775 -38970887 - L1MC4 LINE L1 -197 7845 7321 1470 210 43 9 chr4 145317877 145318224 -38970438 - L1MC4 LINE L1 -957 7085 6727 255 264 28 0 chr4 145318542 145318614 -38970048 + GA-rich Low_complexity Low_complexity 2 75 0 280 303 28 46 chr4 145318639 145318748 -38969914 + MIR SINE MIR 20 126 -82 4241 162 18 73 chr4 145318759 145319943 -38968719 - L1MD1 LINE L1 0 6242 5118 2311 86 115 0 chr4 145320079 145320427 -38968235 - L1P LINE L1 -5746 400 13 2094 172 30 38 chr4 145320422 145320571 -38968091 - L1 LINE L1 -1675 4471 4322 * 2080 145 3 0 chr4 145320571 145320868 -38967794 - AluSq SINE Alu -15 298 1 2094 172 30 38 chr4 145320868 145321247 -38967415 - L1 LINE L1 -1824 4322 3947 1042 196 14 14 chr4 145321249 145321463 -38967199 + MSTB LTR MaLR 1 214 -212 1444 163 4 0 chr4 145322312 145322552 -38966110 + AluSg/x SINE Alu 71 311 -1 1876 186 8 22 chr4 145322865 145323235 -38965427 + MLT1A1 LTR MaLR 1 365 0 297 348 0 0 chr4 145323290 145323379 -38965283 - MIR SINE MIR -94 114 26 376 303 37 0 chr4 145323632 145323741 -38964921 - MER81 DNA DNA -1 113 1 412 254 66 16 chr4 145323818 145323940 -38964722 - L2 LINE L2 -4 3309 3182 216 0 0 0 chr4 145324017 145324041 -38964621 + (CCA)n Simple_repeat Simple_repeat 1 24 0 268 349 7 0 chr4 145324387 145324539 -38964123 + L1MEc LINE L1 172 324 -6072 415 242 109 71 chr4 145324550 145324761 -38963901 + L2 LINE L2 3094 3312 -1 1533 129 4 38 chr4 145324826 145325066 -38963596 + AluSg/x SINE Alu 66 297 -15 752 119 0 0 chr4 145325235 145325344 -38963318 + HY1 scRNA scRNA 1 109 -3 22 0 0 0 chr4 145325344 145325366 -38963296 + AT_rich Low_complexity Low_complexity 1 22 0 318 26 0 0 chr4 145325596 145325635 -38963027 + (GGAA)n Simple_repeat Simple_repeat 2 40 0 735 168 0 0 chr4 145325637 145325780 -38962882 + GA-rich Low_complexity Low_complexity 1 143 0 276 30 0 0 chr4 145325781 145325814 -38962848 + (GGAA)n Simple_repeat Simple_repeat 1 33 0 700 231 147 37 chr4 145325972 145326271 -38962391 - MLT1G LTR MaLR -212 378 47 1070 187 18 18 chr4 145326379 145326598 -38962064 + AluJb SINE Alu 1 219 -93 2276 132 0 0 chr4 145326769 145327080 -38961582 - AluSx SINE Alu -1 311 1 6954 249 49 20 chr4 145327183 145329721 -38958941 - L1MDa LINE L1 -1158 5690 3078 1436 164 0 0 chr4 145329746 145329959 -38958703 - AluSx SINE Alu -99 213 1 1694 176 7 29 chr4 145329968 145330274 -38958388 - AluJo SINE Alu -13 299 1 306 195 26 0 chr4 145330292 145330369 -38958293 - L1MDa LINE L1 -4178 2670 2592 6765 212 39 14 chr4 145330469 145330592 -38958070 + L1M2 LINE L1 2646 2764 -4084 2164 116 3 19 chr4 145330592 145330910 -38957752 + AluSp SINE Alu 1 313 0 6765 212 39 14 chr4 145330910 145332735 -38955927 + L1M2 LINE L1 2764 4647 -2201 499 308 56 8 chr4 145332735 145332969 -38955693 - MSTB1 LTR MaLR 0 432 188 784 155 0 28 chr4 145333080 145333261 -38955401 + CT-rich Low_complexity Low_complexity 1 176 0 342 138 0 38 chr4 145333261 145333341 -38955321 + (TTCC)n Simple_repeat Simple_repeat 1 77 0 1888 173 16 0 chr4 145333341 145333647 -38955015 - AluSx SINE Alu -1 311 1 3002 208 29 32 chr4 145333647 145334559 -38954103 - L1M4 LINE L1 -4654 2195 1266 263 254 0 0 chr4 145335239 145335306 -38953356 - L1MC/D LINE L1 -2052 5756 5690 663 320 22 4 chr4 145335693 145335918 -38952744 - MIR SINE MIR -6 256 28 404 253 71 55 chr4 145336158 145336253 -38952409 - L1ME4a LINE L1 -113 6008 5916 1520 192 13 39 chr4 145336253 145336561 -38952101 - AluJo SINE Alu -12 300 1 404 253 71 55 chr4 145336561 145336773 -38951889 - L1ME4a LINE L1 -205 5916 5696 237 169 220 0 chr4 145337540 145337599 -38951063 - AluS SINE Alu -231 72 1 517 273 19 25 chr4 145337701 145337862 -38950800 + MIR SINE MIR 103 262 0 279 238 38 9 chr4 145337883 145337988 -38950674 + MER103 DNA DNA 13 120 -46 1752 174 7 10 chr4 145338368 145338666 -38949996 - AluJb SINE Alu -15 297 1 647 217 39 66 chr4 145338842 145339100 -38949562 - L1MB8 LINE L1 -1 6177 5927 302 176 0 0 chr4 145339144 145339195 -38949467 - AluJb SINE Alu -192 110 60 2526 83 3 0 chr4 145339383 145339695 -38948967 - AluSp SINE Alu 0 313 1 6236 140 24 11 chr4 145340037 145341888 -38946774 - L1MA3 LINE L1 0 7724 5848 * 14010 160 29 22 chr4 145341871 145345393 -38943269 - L1MA3 LINE L1 -2875 4690 1139 37692 36 2 0 chr4 145345494 145351061 -38937601 + L1PA4 LINE L1 575 6152 -3 1630 197 5 23 chr4 145351073 145351505 -38937157 + L1 LINE L1 4453 4876 -1270 29158 104 10 9 chr4 145351672 145357402 -38931260 - L1PA7 LINE L1 0 6469 722 191 372 145 11 chr4 145357748 145358030 -38930632 + L2 LINE L2 574 893 -2421 408 294 67 50 chr4 145358030 145358268 -38930394 + L2 LINE L2 2036 2277 -1037 2611 151 17 70 chr4 145358411 145359007 -38929655 + L1MB3 LINE L1 5616 6179 -4 449 234 48 14 chr4 145359070 145359215 -38929447 - HsTC2a DNA Tc2 -19 723 574 266 218 0 0 chr4 145359232 145359287 -38929375 - AluJ/monomer SINE Alu -8 294 240 1844 172 0 3 chr4 145359419 145359738 -38928924 - AluJo SINE Alu 0 318 1 1410 221 56 41 chr4 145359738 145360265 -38928397 - HsTC2a DNA Tc2 -163 581 128 360 281 10 0 chr4 145360403 145360499 -38928163 - HsTC2a DNA Tc2 -541 203 107 405 196 54 0 chr4 145360553 145360645 -38928017 + L1MDa LINE L1 17 113 -6427 971 162 56 0 chr4 145360646 145360844 -38927818 + L1MDa LINE L1 1971 2179 -4361 210 37 0 0 chr4 145360967 145360994 -38927668 + (TG)n Simple_repeat Simple_repeat 1 27 0 25 31 0 0 chr4 145361768 145361800 -38926862 + AT_rich Low_complexity Low_complexity 1 32 0 2423 58 0 7 chr4 145361923 145362218 -38926444 + AluY SINE Alu 3 295 -16 935 160 8 114 chr4 145364717 145364791 -38923871 + L1MA3 LINE L1 6071 6151 -154 1451 174 72 38 chr4 145364791 145365084 -38923578 + AluJo SINE Alu 1 303 -9 935 160 8 114 chr4 145365084 145365272 -38923390 + L1MA3 LINE L1 6151 6305 0 22 0 0 0 chr4 145367037 145367059 -38921603 + AT_rich Low_complexity Low_complexity 1 22 0 513 159 25 0 chr4 145368355 145368456 -38920206 - L1 LINE L1 -1191 4955 4851 21 0 0 0 chr4 145369652 145369673 -38918989 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 145370033 145370057 -38918605 + AT_rich Low_complexity Low_complexity 1 24 0 648 270 63 85 chr4 145370141 145370325 -38918337 + L1ME4a LINE L1 5521 5707 -414 1761 171 3 13 chr4 145370325 145370624 -38918038 + AluJo SINE Alu 5 300 -12 648 270 63 85 chr4 145370624 145370990 -38917672 + L1ME4a LINE L1 5707 6059 -62 2567 55 0 0 chr4 145372357 145372664 -38915998 + AluY SINE Alu 1 307 -4 3938 172 27 78 chr4 145372899 145373629 -38915033 - L1MC1 LINE L1 -3 6610 5939 1992 118 3 3 chr4 145373629 145373917 -38914745 - AluSx SINE Alu -11 301 14 3938 172 27 78 chr4 145373917 145374153 -38914509 - L1MC1 LINE L1 -674 5939 5693 7300 234 21 18 chr4 145374158 145376274 -38912388 - L1MC1 LINE L1 -1845 4581 2461 837 195 13 6 chr4 145376279 145376438 -38912224 - FRAM SINE Alu -19 157 1 698 218 0 0 chr4 145376478 145376602 -38912060 - L1MC1 LINE L1 -6302 124 1 6589 131 15 16 chr4 145376874 145378338 -38910324 - L1MA5 LINE L1 -4 6296 4828 979 97 5 38 chr4 145378523 145378596 -38910066 + (TTTC)n Simple_repeat Simple_repeat 1 249 0 979 97 5 38 chr4 145378596 145378781 -38909881 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 212 122 24 0 chr4 145378817 145378858 -38909804 + CT-rich Low_complexity Low_complexity 1 42 0 2049 107 0 14 chr4 145378859 145379139 -38909523 - AluSc SINE Alu -33 276 1 22 0 0 0 chr4 145379395 145379417 -38909245 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr4 145379930 145379967 -38908695 + AT_rich Low_complexity Low_complexity 1 37 0 866 324 48 52 chr4 145380393 145380796 -38907866 - L1M4 LINE L1 -1121 5025 4625 2108 171 11 3 chr4 145380796 145381158 -38907504 + MLT1A1 LTR MaLR 1 365 0 866 324 48 52 chr4 145381158 145381421 -38907241 - L1M4 LINE L1 -1521 4625 4362 235 333 71 0 chr4 145381862 145382003 -38906659 - L1M4 LINE L1 -1945 4201 4051 692 251 63 6 chr4 145382255 145382430 -38906232 + MER5A DNA MER1_type 4 188 -1 2158 131 34 8 chr4 145382437 145382819 -38905843 + L1MB1 LINE L1 5777 6168 0 1560 219 119 25 chr4 145383146 145383617 -38905045 + L2 LINE L2 1708 2222 -1092 467 235 0 9 chr4 145383619 145383734 -38904928 + MER53 DNA DNA 1 114 -75 28 61 0 0 chr4 145383734 145383783 -38904879 + AT_rich Low_complexity Low_complexity 1 49 0 391 175 21 21 chr4 145383827 145383924 -38904738 + MER53 DNA DNA 93 189 0 2423 253 54 16 chr4 145383942 145384767 -38903895 + L2 LINE L2 2230 3096 -217 225 0 0 0 chr4 145384767 145384792 -38903870 + (CA)n Simple_repeat Simple_repeat 1 25 0 2423 253 54 16 chr4 145384792 145384885 -38903777 + L2 LINE L2 3096 3184 -129 2380 76 3 0 chr4 145384999 145385290 -38903372 - AluY SINE Alu -19 292 1 410 208 69 0 chr4 145385513 145385614 -38903048 - FLAM_C SINE Alu -4 139 32 1893 159 0 13 chr4 145385723 145386025 -38902637 + AluJo SINE Alu 1 298 -14 376 270 30 42 chr4 145386808 145386981 -38901681 - MER5B DNA MER1_type -6 172 1 297 320 40 0 chr4 145387602 145387727 -38900935 - L3 LINE CR1 -753 824 695 305 303 206 30 chr4 145389197 145389362 -38899300 - MIR3 SINE MIR -11 197 4 479 191 40 7 chr4 145390274 145390426 -38898236 - Charlie5 DNA MER1_type 0 2624 2468 422 136 11 34 chr4 145390404 145390492 -38898170 - Charlie5 DNA MER1_type -2525 87 2 * 2336 134 14 85 chr4 145390608 145390981 -38897681 - MLT2D LTR ERVL 0 414 76 1721 161 7 18 chr4 145390981 145391301 -38897361 - AluJo SINE Alu 0 317 1 2336 134 14 85 chr4 145391301 145391372 -38897290 - MLT2D LTR ERVL -338 76 1 230 135 39 0 chr4 145391448 145391500 -38897162 + HSMAR1 DNA Mariner 1234 1287 0 366 275 67 20 chr4 145392279 145392428 -38896234 + LTR67 LTR ERVL 395 550 -7 4765 202 91 15 chr4 145392521 145392743 -38895919 - Charlie1 DNA MER1_type -4 2757 2553 2061 133 10 3 chr4 145392743 145393043 -38895619 + AluSx SINE Alu 3 304 -8 4765 202 91 15 chr4 145393043 145394173 -38894489 - Charlie1 DNA MER1_type -208 2553 1 630 165 0 50 chr4 145394793 145394914 -38893748 - Tigger1 DNA MER2_type -14 2404 2290 2765 170 47 10 chr4 145394914 145395567 -38893095 - L1MA4A LINE L1 -1206 4940 4207 * 6629 129 10 9 chr4 145395565 145396919 -38891743 + L1MA4A LINE L1 4944 6301 -2 14262 119 48 7 chr4 145396923 145399124 -38889538 - Tigger1 DNA MER2_type -104 2314 24 29 47 0 0 chr4 145399200 145399243 -38889419 + AT_rich Low_complexity Low_complexity 1 43 0 521 281 58 63 chr4 145399719 145399833 -38888829 + L1ME3A LINE L1 5493 5606 -564 1093 211 57 97 chr4 145399833 145400235 -38888427 - MLT1B LTR MaLR -4 386 1 521 281 58 63 chr4 145400235 145400551 -38888111 + L1ME3A LINE L1 5606 5921 -249 283 292 70 39 chr4 145400900 145401065 -38887597 + MIR SINE MIR 31 208 -54 597 234 39 0 chr4 145401504 145401632 -38887030 - FLAM_A SINE Alu 0 133 1 1979 116 12 44 chr4 145401923 145402207 -38886455 + AluSp SINE Alu 1 275 -38 186 43 0 0 chr4 145402207 145402230 -38886432 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1979 116 12 44 chr4 145402230 145402265 -38886397 + AluSp SINE Alu 275 310 -3 312 196 0 0 chr4 145402426 145402482 -38886180 + MER91B DNA MER1_type 9 64 -126 1053 210 153 37 chr4 145404297 145404940 -38883722 - LTR41 LTR ERVL -16 779 1 444 285 97 12 chr4 145405595 145405760 -38882902 + MIR SINE MIR 72 250 -12 243 311 121 30 chr4 145408271 145408403 -38880259 + MIR SINE MIR 118 261 -1 22 0 0 0 chr4 145408856 145408878 -38879784 + AT_rich Low_complexity Low_complexity 1 22 0 922 269 106 43 chr4 145409171 145409520 -38879142 - MLT1I LTR MaLR -6 403 33 486 274 9 91 chr4 145409815 145410034 -38878628 - MER102a DNA MER1_type -3 327 127 252 117 33 17 chr4 145411008 145411068 -38877594 + (TA)n Simple_repeat Simple_repeat 1 61 0 5735 108 33 8 chr4 145411099 145412891 -38875771 - L1PA16 LINE L1 -9 6157 4326 980 222 4 52 chr4 145412997 145413183 -38875479 + MER58A DNA MER1_type 5 198 -2222 1681 176 0 30 chr4 145413183 145413478 -38875184 + AluJb SINE Alu 1 286 -26 183 80 0 0 chr4 145413483 145413508 -38875154 + (TAAAA)n Simple_repeat Simple_repeat 3 27 0 980 222 4 52 chr4 145413508 145413545 -38875117 + MER58A DNA MER1_type 202 223 -1 293 215 89 0 chr4 145413545 145413624 -38875038 - L1ME4a LINE L1 -87 6034 5949 702 183 128 6 chr4 145413663 145413827 -38874835 + MER3 DNA MER1_type 21 204 -5 687 293 69 30 chr4 145413842 145414204 -38874458 - L1ME4a LINE L1 -241 5880 5505 1931 115 0 7 chr4 145414654 145414933 -38873729 + AluY SINE Alu 3 279 -32 890 50 8 0 chr4 145414934 145415054 -38873608 + (GA)n Simple_repeat Simple_repeat 2 122 0 374 306 135 10 chr4 145415155 145415348 -38873314 + MIR SINE MIR 16 232 -30 225 0 0 0 chr4 145415792 145415817 -38872845 + (T)n Simple_repeat Simple_repeat 1 25 0 2271 101 3 0 chr4 145417039 145417335 -38871327 + AluSg SINE Alu 1 297 -13 970 140 0 0 chr4 145418185 145418328 -38870334 + Tigger3(Golem) DNA MER2_type 2886 3028 -1 675 291 69 14 chr4 145418344 145418766 -38869896 - L1 LINE L1 -2148 3998 3554 308 359 12 4 chr4 145418917 145419215 -38869447 - L1 LINE L1 -3698 2448 2148 25 31 0 0 chr4 145419947 145419979 -38868683 + AT_rich Low_complexity Low_complexity 1 32 0 561 324 122 25 chr4 145420010 145420575 -38868087 - L1M4 LINE L1 -3316 2830 2211 426 286 34 17 chr4 145420626 145420745 -38867917 + MIR SINE MIR 39 159 -103 318 266 32 0 chr4 145424552 145424646 -38864016 + L2 LINE L2 2942 3038 -234 1649 151 50 29 chr4 145424981 145425259 -38863403 + AluJb SINE Alu 1 284 -28 233 29 0 29 chr4 145425259 145425294 -38863368 + (TTAAA)n Simple_repeat Simple_repeat 3 36 0 2538 220 19 17 chr4 145425566 145426084 -38862578 - LTR40a LTR ERVL 0 519 1 902 236 31 50 chr4 145426084 145426343 -38862319 - HERVL40 LTR ERVL 0 5530 5277 809 306 70 28 chr4 145426312 145426710 -38861952 - MER89-int LTR ERV1 -306 6495 6081 * 195 360 79 0 chr4 145427367 145427456 -38861206 - MIR SINE MIR -83 125 30 205 258 45 15 chr4 145427828 145427894 -38860768 - MIR SINE MIR 0 262 195 202 200 0 0 chr4 145427921 145427956 -38860706 - MIR SINE MIR -200 62 28 454 221 53 53 chr4 145428612 145428743 -38859919 + L3 LINE CR1 1442 1572 -5 1084 208 25 17 chr4 145428824 145429060 -38859602 + MIR SINE MIR 25 262 0 351 0 0 0 chr4 145429419 145429458 -38859204 + (CA)n Simple_repeat Simple_repeat 1 39 0 254 321 107 0 chr4 145429730 145429842 -38858820 - L2 LINE L2 -181 3091 2968 219 69 0 0 chr4 145429844 145429873 -38858789 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 605 306 56 5 chr4 145429911 145430107 -38858555 + MIR SINE MIR 25 230 -32 206 320 196 5 chr4 145430581 145430775 -38857887 - MIR SINE MIR -1 261 31 439 207 35 112 chr4 145431225 145431394 -38857268 + MIR SINE MIR 37 192 -70 21 0 0 0 chr4 145431833 145431854 -38856808 + AT_rich Low_complexity Low_complexity 1 21 0 836 162 9 65 chr4 145432581 145432808 -38855854 - MLT2B3 LTR ERVL -1 515 319 1631 176 38 68 chr4 145433413 145433783 -38854879 - MLT2B3 LTR ERVL -192 362 4 2160 184 58 12 chr4 145434229 145434642 -38854020 + MSTB1 LTR MaLR 1 432 0 437 260 36 68 chr4 145435023 145435215 -38853447 + LTR67 LTR ERVL 99 284 -273 654 291 27 35 chr4 145435243 145435501 -38853161 - LTR16B LTR ERVL -4 460 205 266 203 0 16 chr4 145435501 145435565 -38853097 - MLT1D LTR MaLR 0 626 564 631 118 0 146 chr4 145435566 145435710 -38852952 + L1MA9 LINE L1 6092 6214 -98 1342 186 198 3 chr4 145435712 145436045 -38852617 - MLT1D LTR MaLR -57 448 51 362 274 24 113 chr4 145436060 145436272 -38852390 + LTR67 LTR ERVL 329 521 -36 826 301 42 45 chr4 145436351 145436730 -38851932 + MLT1J LTR MaLR 99 476 -35 486 341 75 0 chr4 145437893 145438119 -38850543 + HERV16 LTR ERVL 2293 2535 -3229 695 231 26 6 chr4 145438157 145438313 -38850349 - MER58A DNA MER1_type -15 209 51 1049 185 0 0 chr4 145438326 145438499 -38850163 + L1MC3 LINE L1 6688 6860 -925 2574 149 101 94 chr4 145438547 145438781 -38849881 + L1MC3 LINE L1 6855 7086 -699 249 246 46 0 chr4 145438781 145438846 -38849816 + MLT1F1 LTR MaLR 35 102 -465 2574 149 101 94 chr4 145438846 145439130 -38849532 + L1MC3 LINE L1 7086 7446 -339 711 218 0 0 chr4 145439130 145439254 -38849408 + FLAM_A SINE Alu 2 125 -8 2574 149 101 94 chr4 145439254 145439416 -38849246 + L1MC3 LINE L1 7446 7605 -180 667 172 74 12 chr4 145439665 145439828 -38848834 + L1MC3 LINE L1 7591 7763 -22 233 273 0 78 chr4 145439828 145439905 -38848757 - MER58A DNA MER1_type -36 71 1 1044 311 44 44 chr4 145439935 145440411 -38848251 + HERV16 LTR ERVL 2620 3095 -2669 522 251 141 65 chr4 145441313 145441668 -38846994 + L2 LINE L2 2927 3308 -5 1690 186 60 73 chr4 145441714 145442182 -38846480 + MLT1C LTR MaLR 6 467 0 480 18 0 0 chr4 145443302 145443359 -38845303 + (CA)n Simple_repeat Simple_repeat 1 57 0 1499 193 68 42 chr4 145446055 145446480 -38842182 - MER63B DNA MER1_type 0 436 1 185 0 0 39 chr4 145446915 145446941 -38841721 + (CAGGA)n Simple_repeat Simple_repeat 5 29 0 1306 145 10 14 chr4 145446946 145447153 -38841509 + AluJo SINE Alu 14 219 -93 189 0 0 0 chr4 145447163 145447184 -38841478 + (CAA)n Simple_repeat Simple_repeat 1 21 0 957 188 61 0 chr4 145447457 145447622 -38841040 + FAM SINE Alu 1 175 0 256 279 25 13 chr4 145447706 145447785 -38840877 + L2 LINE L2 1942 2021 -1293 1774 190 42 3 chr4 145447816 145448148 -38840514 - MLT2C1 LTR ERVL -52 345 1 402 217 28 28 chr4 145448636 145448742 -38839920 - MER103 DNA DNA -1 165 60 412 296 47 12 chr4 145448777 145448946 -38839716 + L2 LINE L2 2233 2407 -907 267 302 54 13 chr4 145449896 145450045 -38838617 + L1ME4a LINE L1 5967 6121 0 1152 199 0 0 chr4 145451090 145451291 -38837371 + MER3 DNA MER1_type 1 201 -8 910 260 46 16 chr4 145451747 145451966 -38836696 - LTR33 LTR ERVL 0 521 310 2428 75 0 0 chr4 145451966 145452259 -38836403 + AluSq SINE Alu 11 303 -10 910 260 46 16 chr4 145452259 145452460 -38836202 - LTR33 LTR ERVL -211 310 20 1389 226 96 77 chr4 145453214 145453758 -38834904 + MLT1H1 LTR MaLR 1 554 -1 261 323 42 0 chr4 145454084 145454180 -38834482 + HERV16 LTR ERVL 102 201 -4795 215 91 0 23 chr4 145454410 145454454 -38834208 + (TA)n Simple_repeat Simple_repeat 2 44 0 272 398 24 8 chr4 145454793 145455039 -38833623 + HERV16 LTR ERVL 880 1129 -3867 265 374 20 10 chr4 145455187 145455382 -38833280 + HERV16 LTR ERVL 1389 1585 -4179 1645 322 82 27 chr4 145455532 145456006 -38832656 + HERV16 LTR ERVL 1774 2313 -3451 1158 204 58 0 chr4 145456006 145456212 -38832450 - MER20 DNA MER1_type -1 218 1 1645 322 82 27 chr4 145456212 145456559 -38832103 + HERV16 LTR ERVL 2313 2640 -3124 1070 243 70 68 chr4 145456568 145456983 -38831679 - LTR40c LTR ERVL -4 461 46 1385 183 29 25 chr4 145457035 145457314 -38831348 + MLT1A1 LTR MaLR 1 280 -85 1015 305 26 38 chr4 145457314 145457731 -38830931 + HERV16 LTR ERVL 2652 3063 -2701 477 373 63 0 chr4 145457729 145457984 -38830678 + HERV16 LTR ERVL 3421 3691 -2073 * 973 197 43 29 chr4 145457999 145458207 -38830455 + LTR53 LTR ERVL 309 519 0 261 0 0 0 chr4 145458367 145458396 -38830266 + (A)n Simple_repeat Simple_repeat 1 29 0 3197 208 23 22 chr4 145459485 145460109 -38828553 - L1MCa LINE L1 -4851 1194 841 2258 132 0 0 chr4 145460109 145460412 -38828250 - AluSx SINE Alu -9 303 1 3197 208 23 22 chr4 145460412 145460781 -38827881 - L1MCa LINE L1 -5204 841 474 2408 118 29 0 chr4 145460787 145461136 -38827526 + MER47A DNA MER2_type 8 366 0 2043 191 64 7 chr4 145461142 145461550 -38827112 - L1MCa LINE L1 -5972 592 162 212 358 153 22 chr4 145462278 145462415 -38826247 + MER5A DNA MER1_type 35 189 0 616 319 58 12 chr4 145462722 145462963 -38825699 - MIR SINE MIR 0 262 11 252 0 0 0 chr4 145465539 145465567 -38823095 + (A)n Simple_repeat Simple_repeat 1 28 0 9413 137 14 16 chr4 145465726 145466287 -38822375 + Tigger2 DNA MER2_type 1 562 -2156 2290 118 0 0 chr4 145466287 145466593 -38822069 - AluSg SINE Alu -4 306 1 9413 137 14 16 chr4 145466593 145467548 -38821114 + Tigger2 DNA MER2_type 562 1514 -1204 705 159 14 36 chr4 145467555 145467693 -38820969 - FLAM_C SINE Alu 0 143 9 6701 114 43 14 chr4 145467693 145468698 -38819964 + Tigger2 DNA MER2_type 1493 2526 -192 379 157 14 0 chr4 145468691 145468761 -38819901 - Tigger2 DNA MER2_type -717 2001 1931 * 1516 131 45 0 chr4 145468771 145469016 -38819646 + Tigger2 DNA MER2_type 2462 2717 -1 2924 97 28 7 chr4 145470406 145470789 -38817873 + MLT2A1 LTR ERVL 1 396 -48 279 0 0 0 chr4 145470789 145470820 -38817842 + (TG)n Simple_repeat Simple_repeat 2 32 0 2924 97 28 7 chr4 145470820 145470871 -38817791 + MLT2A1 LTR ERVL 396 444 0 878 221 53 78 chr4 145470965 145471286 -38817376 + MLT1G1 LTR MaLR 1 313 -282 570 178 12 245 chr4 145471541 145471837 -38816825 + MIR SINE MIR 3 218 -44 1868 205 26 18 chr4 145471837 145472227 -38816435 + MSTD LTR MaLR 3 395 -1 570 178 12 245 chr4 145472227 145472256 -38816406 + MIR SINE MIR 218 252 -10 245 192 128 0 chr4 145472269 145472347 -38816315 - MER69 DNA AcHobo -12 2514 2427 323 284 21 11 chr4 145472666 145472761 -38815901 - L1MC4 LINE L1 -1333 6709 6614 * 346 230 0 60 chr4 145472677 145472777 -38815885 + L1MC4 LINE L1 6612 6705 -1337 5471 144 17 19 chr4 145473080 145474179 -38814483 + L1PB2 LINE L1 4508 5608 -543 1961 132 7 0 chr4 145474179 145474452 -38814210 + AluSx SINE Alu 1 275 -37 180 0 0 0 chr4 145474458 145474478 -38814184 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 5471 144 17 19 chr4 145474478 145475019 -38813643 + L1PB2 LINE L1 5613 6151 0 28 0 0 0 chr4 145475047 145475075 -38813587 + AT_rich Low_complexity Low_complexity 1 28 0 4168 160 39 33 chr4 145475663 145476006 -38812656 - L1MB1 LINE L1 -12 6156 5817 1819 136 3 65 chr4 145476006 145476315 -38812347 - AluSg SINE Alu -20 290 1 4168 160 39 33 chr4 145476315 145476358 -38812304 - L1MB1 LINE L1 -351 5817 5776 1988 123 109 6 chr4 145476358 145476698 -38811964 + THE1C LTR MaLR 1 375 0 4168 160 39 33 chr4 145476698 145477159 -38811503 - L1MB1 LINE L1 -392 5776 5303 1542 175 70 18 chr4 145479646 145479931 -38808731 - AluJb SINE Alu -12 300 1 1882 202 3 6 chr4 145480057 145480423 -38808239 + MLT1A1 LTR MaLR 1 365 0 26 30 0 0 chr4 145480765 145480798 -38807864 + AT_rich Low_complexity Low_complexity 1 33 0 1213 24 36 0 chr4 145481854 145482022 -38806640 + (TTTC)n Simple_repeat Simple_repeat 3 176 0 1887 148 7 0 chr4 145482024 145482307 -38806355 - AluSx SINE Alu -27 285 1 198 0 0 0 chr4 145482581 145482603 -38806059 + (CAT)n Simple_repeat Simple_repeat 2 23 0 5238 132 24 37 chr4 145482829 145483852 -38804810 + L1MC1 LINE L1 5186 6190 -143 25 31 0 0 chr4 145484308 145484340 -38804322 + AT_rich Low_complexity Low_complexity 1 32 0 342 337 149 48 chr4 145485426 145485889 -38802773 - L1M2 LINE L1 -5690 1159 650 292 274 73 90 chr4 145486516 145486750 -38801912 - L1ME LINE L1 -337 5784 5555 215 31 31 0 chr4 145486804 145486836 -38801826 + (TG)n Simple_repeat Simple_repeat 2 34 0 822 218 5 36 chr4 145486863 145487056 -38801606 - MIR3 SINE MIR -16 192 6 212 54 54 0 chr4 145487411 145487448 -38801214 + T-rich Low_complexity Low_complexity 4 42 0 810 204 35 71 chr4 145487459 145487685 -38800977 - MER20 DNA MER1_type 0 219 2 211 246 98 0 chr4 145489653 145489714 -38798948 + MER5A DNA MER1_type 47 113 -76 315 279 103 88 chr4 145489896 145490158 -38798504 + L2 LINE L2 3000 3265 -7 189 310 0 0 chr4 145490506 145490564 -38798098 - MIR SINE MIR -107 155 98 762 206 63 11 chr4 145491886 145492061 -38796601 + MIR SINE MIR 61 244 -18 467 307 108 33 chr4 145492137 145492349 -38796313 + MIR SINE MIR 23 250 -12 311 296 11 0 chr4 145492464 145492552 -38796110 + MIR SINE MIR 173 261 -1 244 111 0 0 chr4 145493232 145493268 -38795394 + Alu SINE Alu 255 290 -9 281 80 3 0 chr4 145493462 145493506 -38795156 - MLT1A1 LTR MaLR -7 382 319 751 65 0 19 chr4 145493536 145493644 -38795018 - L1PB2 LINE L1 -4 6147 6042 824 41 0 0 chr4 145493651 145493749 -38794913 - AluY SINE Alu -5 306 209 933 198 82 50 chr4 145493749 145494067 -38794595 - MLT1A1 LTR MaLR -37 328 1 22 35 0 0 chr4 145494282 145494311 -38794351 + AT_rich Low_complexity Low_complexity 1 29 0 426 240 73 59 chr4 145494776 145494980 -38793682 - L1MC/D LINE L1 -1993 5815 5609 346 306 71 35 chr4 145495013 145495183 -38793479 - L1MC/D LINE L1 -607 5514 5339 213 39 0 0 chr4 145495444 145495470 -38793192 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2319 114 0 0 chr4 145495514 145495822 -38792840 - AluSx SINE Alu -4 308 1 26 0 0 0 chr4 145498596 145498622 -38790040 + AT_rich Low_complexity Low_complexity 1 26 0 1978 160 0 10 chr4 145498771 145499078 -38789584 - AluJb SINE Alu -8 304 1 182 292 21 0 chr4 145502712 145502760 -38785902 - L2 LINE L2 -18 3254 3206 640 222 84 87 chr4 145503590 145503960 -38784702 - MLT1I LTR MaLR -40 369 1 2332 123 44 27 chr4 145503965 145504370 -38784292 - MLT2D LTR ERVL 0 414 3 285 174 58 29 chr4 145505210 145505279 -38783383 - MIR SINE MIR -61 147 77 944 291 4 4 chr4 145507439 145507683 -38780979 + MIR SINE MIR 18 261 -1 338 324 46 0 chr4 145508247 145508355 -38780307 + L2 LINE L2 3160 3272 0 385 252 75 0 chr4 145508799 145508906 -38779756 - MIR SINE MIR -72 190 76 2033 147 3 13 chr4 145509137 145509437 -38779225 + AluJb SINE Alu 1 297 -15 367 260 62 10 chr4 145510067 145510163 -38778499 - MIR3 SINE MIR -26 182 82 186 250 15 118 chr4 145510556 145510692 -38777970 - MIR SINE MIR -10 252 131 495 277 71 36 chr4 145510706 145510930 -38777732 + MIR SINE MIR 30 261 -1 1402 156 28 40 chr4 145511048 145511318 -38777344 + MER33 DNA MER1_type 1 268 -2317 2247 112 0 3 chr4 145511318 145511622 -38777040 - AluSx SINE Alu -9 303 1 1402 156 28 40 chr4 145511622 145511678 -38776984 + MER33 DNA MER1_type 268 323 -1 313 200 13 67 chr4 145512834 145512909 -38775753 - MER5A DNA MER1_type -118 71 1 348 24 0 0 chr4 145513272 145513313 -38775349 + (TG)n Simple_repeat Simple_repeat 1 41 0 793 176 0 0 chr4 145513524 145513655 -38775007 - FLAM_C SINE Alu -1 132 2 1105 154 6 11 chr4 145513857 145514032 -38774630 - AluJo SINE Alu -2 310 137 2163 121 3 3 chr4 145514565 145514863 -38773799 - AluSx SINE Alu -14 298 1 251 146 0 0 chr4 145516088 145516136 -38772526 - AluJo SINE Alu -169 133 86 1374 172 0 5 chr4 145516136 145516357 -38772305 - AluJo SINE Alu -92 220 1 414 158 17 67 chr4 145516639 145516759 -38771903 + L1MA7 LINE L1 6172 6285 -6 504 305 58 5 chr4 145516790 145517013 -38771649 - LTR16C LTR ERVL -2 489 255 1849 147 0 29 chr4 145517680 145517986 -38770676 + AluJb SINE Alu 1 297 -15 390 289 46 53 chr4 145518163 145518315 -38770347 + L2 LINE L2 3115 3265 -7 23 0 0 0 chr4 145518436 145518459 -38770203 + AT_rich Low_complexity Low_complexity 1 23 0 2068 105 3 21 chr4 145518740 145519061 -38769601 - AluY SINE Alu 0 316 1 291 286 64 0 chr4 145519071 145519211 -38769451 - L1ME LINE L1 -302 5819 5671 229 353 43 11 chr4 145519211 145519395 -38769267 - MLT1J LTR MaLR 0 511 322 367 244 178 33 chr4 145519521 145519701 -38768961 - MLT1L LTR MaLR -358 257 52 1278 203 86 9 chr4 145519858 145520184 -38768478 - L1MB4 LINE L1 -2 6178 5828 271 373 16 5 chr4 145520185 145520370 -38768292 - L1ME LINE L1 -2195 5613 5427 2342 82 0 0 chr4 145520392 145520683 -38767979 + AluSc SINE Alu 1 291 -18 309 231 120 0 chr4 145521794 145521911 -38766751 + MIR SINE MIR 111 241 -21 241 157 0 57 chr4 145524766 145524836 -38763826 + (TATG)n Simple_repeat Simple_repeat 2 67 0 182 325 115 70 chr4 145525119 145525186 -38763476 + L2 LINE L2 3002 3065 -207 1804 197 22 14 chr4 145525186 145525547 -38763115 - MLT1A1 LTR MaLR 0 365 2 182 325 115 70 chr4 145525547 145525577 -38763085 + L2 LINE L2 3065 3092 -180 186 43 0 0 chr4 145525577 145525600 -38763062 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 1876 132 25 11 chr4 145525600 145525880 -38762782 - AluSx SINE Alu -28 284 1 182 325 115 70 chr4 145525880 145526023 -38762639 + L2 LINE L2 3091 3255 -17 280 318 190 11 chr4 145526281 145526460 -38762202 - MIR SINE MIR -29 233 23 36 62 0 0 chr4 145527577 145527641 -38761021 + AT_rich Low_complexity Low_complexity 1 64 0 220 337 12 0 chr4 145530450 145530536 -38758126 - MIR SINE MIR -14 248 162 693 234 224 61 chr4 145531007 145531481 -38757181 - MLT1H1 LTR MaLR 0 555 5 223 309 0 0 chr4 145531670 145531751 -38756911 + MIR SINE MIR 110 190 -72 2600 47 0 0 chr4 145531879 145532178 -38756484 - AluY SINE Alu -3 308 10 2336 114 0 0 chr4 145532210 145532516 -38756146 - AluSc SINE Alu -3 306 1 203 194 0 0 chr4 145532809 145532845 -38755817 + A-rich Low_complexity Low_complexity 1 36 0 313 203 68 14 chr4 145533798 145533872 -38754790 + L2 LINE L2 2697 2774 -540 612 265 157 34 chr4 145533983 145534307 -38754355 + L2 LINE L2 2942 3305 -8 1042 180 38 0 chr4 145534646 145534857 -38753805 - MER20 DNA MER1_type 0 219 1 281 282 91 9 chr4 145537114 145537224 -38751438 - MER5B DNA MER1_type -51 127 9 326 310 9 17 chr4 145537245 145537361 -38751301 + L2 LINE L2 3194 3308 -5 2116 103 0 0 chr4 145537407 145537670 -38750992 + AluSx SINE Alu 34 296 -16 1935 146 0 7 chr4 145539291 145539579 -38749083 - AluSx SINE Alu -16 296 11 246 283 40 10 chr4 145539593 145539692 -38748970 + MIR SINE MIR 88 189 -73 185 349 66 38 chr4 145539734 145539840 -38748822 + L2 LINE L2 3147 3255 -17 * 449 295 216 4 chr4 145539828 145540069 -38748593 + L2 LINE L2 3017 3308 -5 204 40 0 0 chr4 145541586 145541611 -38747051 + (T)n Simple_repeat Simple_repeat 1 25 0 946 43 17 0 chr4 145541656 145541773 -38746889 + AluY SINE Alu 173 291 -20 213 302 66 0 chr4 145542076 145542182 -38746480 - MIR SINE MIR -62 146 34 183 42 0 0 chr4 145544116 145544140 -38744522 + (CAGCC)n Simple_repeat Simple_repeat 1 24 0 511 264 118 0 chr4 145545997 145546175 -38742487 + MIR SINE MIR 56 254 -8 277 274 74 0 chr4 145547300 145547395 -38741267 - MIR SINE MIR 0 262 161 2225 47 0 0 chr4 145547963 145548219 -38740443 + AluY SINE Alu 1 256 -55 505 297 28 19 chr4 145548329 145548541 -38740121 + MIR SINE MIR 12 225 -37 678 238 61 0 chr4 145548547 145548694 -38739968 - MER63A DNA MER1_type -1 209 54 213 241 17 17 chr4 145549152 145549210 -38739452 - MIR SINE MIR -23 239 182 638 212 98 0 chr4 145549690 145549883 -38738779 + MIR SINE MIR 51 262 0 570 274 87 59 chr4 145550162 145550476 -38738186 - L1ME LINE L1 -474 5688 5366 5697 157 57 5 chr4 145550577 145551538 -38737124 - L1M1 LINE L1 -6535 1030 20 221 239 0 0 chr4 145552186 145552232 -38736430 + CT-rich Low_complexity Low_complexity 1 46 0 1754 192 7 3 chr4 145552420 145552727 -38735935 - AluJo SINE Alu -4 308 1 193 324 42 0 chr4 145552851 145552922 -38735740 + L3b LINE CR1 1185 1258 -325 380 319 38 29 chr4 145554283 145554462 -38734200 - MIR SINE MIR -65 143 10 255 79 0 0 chr4 145554602 145554640 -38734022 + (CAT)n Simple_repeat Simple_repeat 1 38 0 433 181 200 25 chr4 145554945 145555105 -38733557 - MER112 DNA MER1_type -6 254 67 201 39 0 0 chr4 145555597 145555623 -38733039 + (CA)n Simple_repeat Simple_repeat 1 26 0 195 297 54 0 chr4 145555684 145555758 -38732904 - MIR SINE MIR -24 238 161 639 240 123 17 chr4 145557892 145558071 -38730591 + MIR SINE MIR 19 216 -46 256 127 36 0 chr4 145558960 145559015 -38729647 + (TG)n Simple_repeat Simple_repeat 1 57 0 239 269 0 11 chr4 145559320 145559413 -38729249 + (TA)n Simple_repeat Simple_repeat 1 92 0 1873 146 25 0 chr4 145559413 145559694 -38728968 - AluSq SINE Alu -25 288 1 21 0 0 0 chr4 145559722 145559743 -38728919 + AT_rich Low_complexity Low_complexity 1 21 0 334 268 122 12 chr4 145559969 145560133 -38728529 - MIR3 SINE MIR -23 185 4 2285 249 98 16 chr4 145560188 145560986 -38727676 + L1PB1 LINE L1 22 884 -5979 * 7800 169 5 1 chr4 145560982 145562982 -38725680 + L1PB1 LINE L1 4504 6512 -355 247 204 11 43 chr4 145562970 145563063 -38725599 - L1MC4 LINE L1 -1339 6703 6614 * 567 104 33 49 chr4 145563102 145563285 -38725377 + (TA)n Simple_repeat Simple_repeat 1 180 0 249 102 0 68 chr4 145563311 145563399 -38725263 + (TA)n Simple_repeat Simple_repeat 1 82 0 2186 136 13 31 chr4 145563400 145563789 -38724873 + L1PB1 LINE L1 6485 6866 -1 245 286 122 51 chr4 145564035 145564231 -38724431 + L1ME LINE L1 5512 5721 -400 240 197 167 0 chr4 145564546 145564612 -38724050 + MIR3 SINE MIR 111 187 -21 341 42 0 21 chr4 145565107 145565155 -38723507 + (TTCC)n Simple_repeat Simple_repeat 1 47 0 2187 132 0 0 chr4 145565155 145565451 -38723211 - AluSq SINE Alu -17 296 1 22 0 0 0 chr4 145565665 145565687 -38722975 + AT_rich Low_complexity Low_complexity 1 22 0 1335 255 72 29 chr4 145566724 145567758 -38720904 - Charlie7 DNA MER1_type 0 2612 5 490 259 89 95 chr4 145568944 145569176 -38719486 + MLT1J LTR MaLR 6 235 -276 180 0 0 0 chr4 145569176 145569196 -38719466 + (TTC)n Simple_repeat Simple_repeat 2 21 0 490 259 89 95 chr4 145569196 145569414 -38719248 + MLT1J LTR MaLR 235 453 -58 180 152 0 0 chr4 145569432 145569465 -38719197 + (CATATA)n Simple_repeat Simple_repeat 3 35 0 26946 79 6 10 chr4 145569710 145575871 -38712791 - L1PA6 LINE L1 -10 6144 11 2109 204 36 25 chr4 145575989 145576489 -38712173 - MLT1D LTR MaLR 0 549 1 907 168 0 0 chr4 145576572 145576709 -38711953 + FAM SINE Alu 30 166 -19 2169 118 30 0 chr4 145576967 145577271 -38711391 + AluSq SINE Alu 1 313 0 261 259 133 32 chr4 145577418 145577576 -38711086 + MLT1K LTR MaLR 2 175 -413 1907 152 3 25 chr4 145577770 145578086 -38710576 + AluJb SINE Alu 1 309 -3 200 209 60 30 chr4 145578281 145578348 -38710314 + MIR SINE MIR 30 98 -164 254 281 0 0 chr4 145579474 145579538 -38709124 + (TG)n Simple_repeat Simple_repeat 1 64 0 569 240 39 34 chr4 145580002 145580206 -38708456 - LTR16C LTR ERVL -2 489 285 318 361 48 26 chr4 145580585 145581122 -38707540 - HERV16 LTR ERVL -379 5385 4837 613 324 62 46 chr4 145581369 145581739 -38706923 - HERV16 LTR ERVL -1964 3032 2657 859 243 43 12 chr4 145581928 145582247 -38706415 - MLT1G1 LTR MaLR -305 285 1 388 330 37 46 chr4 145582271 145582725 -38705937 - HERV16 LTR ERVL -4186 810 361 606 314 71 4 chr4 145583049 145583329 -38705333 - LTR16C LTR ERVL 0 491 193 665 290 34 51 chr4 145583567 145583919 -38704743 + HAL1 LINE L1 2 347 -2160 1769 287 63 33 chr4 145583959 145584880 -38703782 + HAL1 LINE L1 426 1374 -1133 4943 258 103 68 chr4 145584880 145585163 -38703499 + L2 LINE L2 632 904 -2409 240 59 0 0 chr4 145585163 145585197 -38703465 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4943 258 103 68 chr4 145585197 145587204 -38701458 + L2 LINE L2 904 3008 -305 1732 318 128 24 chr4 145587232 145587826 -38700836 + HAL1 LINE L1 1532 2249 -258 2307 127 5 19 chr4 145587826 145588197 -38700465 - MER47A DNA MER2_type 0 366 1 1732 318 128 24 chr4 145588197 145588486 -38700176 + HAL1 LINE L1 2249 2507 0 217 128 43 0 chr4 145588668 145588715 -38699947 + CT-rich Low_complexity Low_complexity 3 51 0 1451 213 40 10 chr4 145588718 145589060 -38699602 - AluJo SINE Alu 0 312 117 432 0 0 0 chr4 145589060 145589108 -38699554 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1451 213 40 10 chr4 145589108 145589229 -38699433 - AluJo SINE Alu -195 117 1 192 263 0 35 chr4 145589709 145589766 -38698896 - L2 LINE L2 -11 3261 3207 1104 154 6 0 chr4 145590008 145590177 -38698485 + FRAM SINE Alu 1 170 -6 566 236 96 24 chr4 145590228 145590436 -38698226 - Charlie8 DNA MER1_type -2160 257 35 1089 263 103 14 chr4 145591065 145591500 -38697162 + LTR16B LTR ERVL 6 458 -6 467 322 23 0 chr4 145591500 145591671 -38696991 + HERV16 LTR ERVL 4 178 -4818 3034 208 59 18 chr4 145591871 145592653 -38696009 + L1ME1 LINE L1 5348 6161 -5 1443 296 62 20 chr4 145592660 145593374 -38695288 + HERV16 LTR ERVL 348 1091 -3905 938 314 65 56 chr4 145593394 145594580 -38694082 + HERV16 LTR ERVL 3730 5260 -369 2774 10 3 6 chr4 145595013 145595327 -38693335 - AluYb8 SINE Alu -5 313 1 960 171 0 0 chr4 145595664 145595810 -38692852 - FRAM SINE Alu -32 144 1 196 241 127 0 chr4 145596328 145596407 -38692255 + L2 LINE L2 3200 3288 -25 2299 97 3 0 chr4 145596819 145597129 -38691533 - AluY SINE Alu 0 311 1 994 214 83 0 chr4 145597309 145597538 -38691124 - MIR SINE MIR -6 256 9 3531 168 6 0 chr4 145597564 145598238 -38690424 - L1 LINE L1 -1148 4998 4321 722 209 0 8 chr4 145598238 145598372 -38690290 - AluJb SINE Alu -12 300 168 1434 103 84 26 chr4 145598372 145598645 -38690017 + L1MA7 LINE L1 5997 6285 -6 212 256 0 89 chr4 145599315 145599405 -38689257 - MIR SINE MIR -16 246 165 * 435 342 124 20 chr4 145599402 145599756 -38688906 + L3 LINE CR1 412 802 -775 342 325 6 60 chr4 145600273 145600439 -38688223 + MIR SINE MIR 33 189 -73 462 269 108 18 chr4 145600521 145600688 -38687974 - L3 LINE CR1 -280 1297 1116 724 324 166 23 chr4 145600862 145601017 -38687645 - L3 LINE CR1 -476 1101 969 180 0 0 0 chr4 145601017 145601037 -38687625 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 724 324 166 23 chr4 145601037 145601443 -38687219 - L3 LINE CR1 -608 969 460 227 152 22 0 chr4 145601574 145601620 -38687042 - MLT2B1 LTR ERVL -8 512 466 4178 181 18 1 chr4 145601649 145602369 -38686293 + MER44D DNA MER2_type 2 605 0 183 225 0 0 chr4 145602372 145602443 -38686219 + GA-rich Low_complexity Low_complexity 2 72 0 14756 121 23 7 chr4 145602462 145604809 -38683853 + Tigger1 DNA MER2_type 34 2418 0 1946 195 99 7 chr4 145604809 145605244 -38683418 - MLT2B1 LTR ERVL -45 475 1 791 97 0 0 chr4 145605255 145605369 -38683293 + L1PA13 LINE L1 6022 6135 -28 2124 123 3 3 chr4 145605569 145605869 -38682793 + AluSq SINE Alu 1 300 -13 267 282 176 60 chr4 145606726 145606942 -38681720 - L2 LINE L2 -10 3262 3022 23 33 0 0 chr4 145607815 145607845 -38680817 + AT_rich Low_complexity Low_complexity 1 30 0 277 328 23 47 chr4 145610867 145610995 -38677667 + MIR SINE MIR 22 146 -116 442 226 132 19 chr4 145611080 145611239 -38677423 - MIR SINE MIR -71 191 15 1252 128 0 0 chr4 145612849 145613013 -38675649 + AluSg/x SINE Alu 124 287 -25 184 286 0 0 chr4 145614031 145614080 -38674582 - MIR SINE MIR -122 140 92 286 187 247 20 chr4 145614486 145614636 -38674026 + LTR50 LTR ERVL 3 186 -609 448 206 173 0 chr4 145614694 145614969 -38673693 + LTR50 LTR ERVL 364 518 -5 545 309 94 82 chr4 145616127 145616815 -38671847 + L2 LINE L2 2548 3271 -1 252 0 0 0 chr4 145617867 145617895 -38670767 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 246 333 21 11 chr4 145617899 145617992 -38670670 - L2 LINE L2 -15 3257 3164 194 367 72 22 chr4 145618081 145618441 -38670221 + L2 LINE L2 2380 2757 -557 603 268 42 25 chr4 145618502 145618704 -38669958 - MIR SINE MIR -27 235 31 321 89 0 0 chr4 145619830 145619875 -38668787 + (CA)n Simple_repeat Simple_repeat 2 46 0 332 202 48 97 chr4 145620138 145620262 -38668400 + MIR SINE MIR 1 118 -144 28 29 0 0 chr4 145620296 145620331 -38668331 + AT_rich Low_complexity Low_complexity 1 35 0 333 179 192 13 chr4 145620352 145620430 -38668232 - L2 LINE L2 -29 3284 3193 857 249 45 16 chr4 145621977 145622222 -38666440 - MIR SINE MIR -5 257 6 512 199 58 35 chr4 145623886 145624057 -38664605 - MER5B DNA MER1_type 0 178 4 579 290 65 37 chr4 145624082 145624299 -38664363 + MIR SINE MIR 28 250 -12 2017 235 142 40 chr4 145624460 145625566 -38663096 + L2 LINE L2 2094 3313 0 23 0 0 0 chr4 145626216 145626239 -38662423 + AT_rich Low_complexity Low_complexity 1 23 0 612 299 83 37 chr4 145626761 145627012 -38661650 + MIR SINE MIR 3 260 -2 189 171 0 0 chr4 145627014 145627049 -38661613 + (TTA)n Simple_repeat Simple_repeat 3 37 0 2267 106 0 0 chr4 145627608 145627911 -38660751 - AluSx SINE Alu -9 303 1 191 374 70 64 chr4 145628470 145628657 -38660005 - MER5A DNA MER1_type -1 188 1 278 250 47 0 chr4 145628716 145628780 -38659882 - MIR3 SINE MIR -1 207 141 257 219 201 10 chr4 145628843 145628953 -38659709 + MIR SINE MIR 1 135 -73 185 258 48 32 chr4 145629839 145629901 -38658761 + MIR SINE MIR 200 262 0 1859 149 7 14 chr4 145630075 145630370 -38658292 + AluJo SINE Alu 1 293 -19 259 299 30 0 chr4 145630455 145630522 -38658140 - MER112 DNA MER1_type -1 259 191 25 51 0 0 chr4 145631228 145631267 -38657395 + AT_rich Low_complexity Low_complexity 1 39 0 472 308 92 0 chr4 145632106 145632285 -38656377 - MIR3 SINE MIR -1 207 10 692 160 8 8 chr4 145633813 145633938 -38654724 + L1MC1 LINE L1 6208 6332 -1 234 269 355 28 chr4 145634235 145634376 -38654286 - MIR3 SINE MIR -2 206 20 228 54 0 0 chr4 145634777 145634814 -38653848 + L1PA8 LINE L1 6136 6172 0 600 321 36 0 chr4 145635334 145635502 -38653160 - MIR SINE MIR -12 250 77 762 252 117 4 chr4 145637135 145637365 -38651297 - MIR SINE MIR -6 256 1 289 335 168 6 chr4 145637679 145637846 -38650816 - L3b LINE CR1 -97 1486 1293 184 300 0 0 chr4 145638389 145638429 -38650233 - L2 LINE L2 -229 3043 3004 420 269 47 34 chr4 145641737 145641886 -38646776 - MIR SINE MIR -40 222 72 324 179 39 13 chr4 145642394 145642472 -38646190 - MIR3 SINE MIR -6 202 123 724 54 0 0 chr4 145643113 145643206 -38645456 - AluSg/x SINE Alu -4 306 214 1692 175 4 4 chr4 145643533 145643807 -38644855 + AluJo SINE Alu 9 282 -30 243 79 0 0 chr4 145643808 145643846 -38644816 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 510 390 38 20 chr4 145645374 145645820 -38642842 - L2 LINE L2 -849 2465 2012 3586 226 25 13 chr4 145648315 145649651 -38639011 + L1M1 LINE L1 3225 4580 -2985 1527 183 45 12 chr4 145649892 145650226 -38638436 + L1MA10 LINE L1 5986 6330 -4 2224 108 0 0 chr4 145650439 145650736 -38637926 - AluSx SINE Alu -15 297 1 878 128 15 0 chr4 145652667 145652800 -38635862 + AluJo SINE Alu 1 135 -177 353 288 125 38 chr4 145652837 145652920 -38635742 + L1ME1 LINE L1 5258 5332 -2476 360 0 0 0 chr4 145652920 145652960 -38635702 + (CA)n Simple_repeat Simple_repeat 1 40 0 353 288 125 38 chr4 145652960 145653117 -38635545 + L1ME1 LINE L1 5332 5534 -2274 1347 183 66 17 chr4 145653117 145653406 -38635256 + AluJo SINE Alu 1 303 -9 353 288 125 38 chr4 145653406 145653477 -38635185 + L1ME1 LINE L1 5534 5597 -2211 380 297 102 57 chr4 145653501 145653747 -38634915 - MIR SINE MIR 0 262 6 436 306 81 30 chr4 145653868 145654165 -38634497 + L1MEd LINE L1 263 574 -5545 735 262 101 4 chr4 145654325 145654562 -38634100 - MIR SINE MIR -2 260 1 328 241 68 111 chr4 145654564 145654771 -38633891 + HAL1 LINE L1 1427 1624 -883 376 298 51 70 chr4 145655288 145655503 -38633159 + MLT1L LTR MaLR 208 418 -197 1250 168 5 14 chr4 145655506 145655720 -38632942 + AluSx SINE Alu 1 212 -100 264 30 0 0 chr4 145655744 145655777 -38632885 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 258 242 81 0 chr4 145655779 145655841 -38632821 + MLT1L LTR MaLR 413 479 -136 1328 176 18 21 chr4 145656582 145656873 -38631789 + L1ME1 LINE L1 5879 6158 -8 329 329 38 67 chr4 145657292 145657512 -38631150 - MIR SINE MIR -50 212 2 379 237 178 35 chr4 145657721 145657890 -38630772 - MIR SINE MIR -25 237 45 1967 124 17 21 chr4 145658084 145658375 -38630287 - AluSx SINE Alu -22 290 1 21 0 0 0 chr4 145658633 145658654 -38630008 + AT_rich Low_complexity Low_complexity 1 21 0 511 309 80 5 chr4 145660042 145660243 -38628419 + L2 LINE L2 3098 3313 0 2092 130 3 0 chr4 145661683 145661976 -38626686 + AluSx SINE Alu 2 295 -17 346 346 0 0 chr4 145662518 145662625 -38626037 + MIR SINE MIR 48 154 -108 251 260 84 78 chr4 145662618 145662772 -38625890 - MIR SINE MIR 0 262 108 * 186 340 0 0 chr4 145663297 145663344 -38625318 + L2 LINE L2 3202 3248 -24 27 29 0 0 chr4 145663602 145663636 -38625026 + AT_rich Low_complexity Low_complexity 1 34 0 19718 37 0 0 chr4 145663987 145667176 -38621486 + L1PA2 LINE L1 2966 6154 -1 222 37 0 0 chr4 145667176 145667203 -38621459 + (TA)n Simple_repeat Simple_repeat 1 27 0 214 302 123 0 chr4 145667523 145667629 -38621033 + L2 LINE L2 1939 2057 -1257 373 271 107 0 chr4 145667829 145667951 -38620711 + L2 LINE L2 3138 3272 0 202 311 34 59 chr4 145667909 145668028 -38620634 - MIR SINE MIR -143 119 4 * 225 288 0 15 chr4 145668260 145668326 -38620336 + (TATATG)n Simple_repeat Simple_repeat 3 67 0 2645 235 35 36 chr4 145669563 145670538 -38618124 - L1ME3 LINE L1 -70 6092 5125 576 318 51 16 chr4 145671188 145671443 -38617219 + L2 LINE L2 2440 2703 -611 1344 199 57 15 chr4 145671556 145671732 -38616930 - AluJo SINE Alu -4 308 116 237 33 0 0 chr4 145671732 145671762 -38616900 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1344 199 57 15 chr4 145671762 145671847 -38616815 - AluJo SINE Alu -196 116 36 23 54 0 0 chr4 145672021 145672058 -38616604 + AT_rich Low_complexity Low_complexity 1 37 0 1296 200 77 19 chr4 145672735 145673060 -38615602 + MER2 DNA MER2_type 1 344 0 433 277 64 32 chr4 145674524 145674712 -38613950 - MIR SINE MIR -19 243 50 517 254 172 19 chr4 145674729 145674938 -38613724 + MIR SINE MIR 6 246 -16 201 196 22 22 chr4 145675526 145675572 -38613090 - MIR SINE MIR -56 152 107 696 256 183 36 chr4 145676007 145676367 -38612295 - L2 LINE L2 -73 3240 2828 323 354 175 18 chr4 145676369 145676649 -38612013 - L2 LINE L2 -1972 1342 1019 843 254 111 16 chr4 145676649 145676956 -38611706 - L2 LINE L2 -2144 1170 835 558 239 51 68 chr4 145676972 145677148 -38611514 - MER91B DNA MER1_type -12 178 6 318 315 95 47 chr4 145677978 145678515 -38610147 - L2 LINE L2 -374 2940 2378 355 364 79 0 chr4 145679021 145679161 -38609501 - L2 LINE L2 0 3272 3122 1334 238 84 39 chr4 145679600 145680016 -38608646 + LTR16A LTR ERVL 16 450 0 944 118 0 28 chr4 145680046 145680190 -38608472 - AluSg/x SINE Alu 0 312 173 999 104 0 0 chr4 145680290 145680434 -38608228 - L1P4 LINE L1 -624 5542 5399 361 204 0 78 chr4 145680450 145680553 -38608109 - L1MC4 LINE L1 -11 8031 7937 293 401 68 39 chr4 145680739 145681046 -38607616 + L2 LINE L2 2937 3252 -20 561 195 25 17 chr4 145681163 145681281 -38607381 + MLT1A2 LTR MaLR 42 160 -205 7331 185 34 10 chr4 145681286 145682573 -38606089 + L1PB4 LINE L1 3711 5044 -1102 2161 108 7 3 chr4 145682573 145682880 -38605782 + AluY SINE Alu 1 308 -3 7331 185 34 10 chr4 145682880 145683136 -38605526 + L1PB4 LINE L1 5044 5292 -854 1693 149 49 0 chr4 145683136 145683421 -38605241 + L1PB4 LINE L1 5855 6156 0 697 226 31 53 chr4 145683429 145683655 -38605007 + MLT1A2 LTR MaLR 154 374 0 536 246 74 53 chr4 145683818 145684062 -38604600 + MIR SINE MIR 3 256 -6 1819 170 0 22 chr4 145684443 145684761 -38603901 + AluJb SINE Alu 1 311 -1 195 220 0 0 chr4 145686521 145686571 -38602091 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 653 324 58 23 chr4 145686817 145687154 -38601508 + L2 LINE L2 2670 3030 -283 822 169 0 0 chr4 145687181 145687317 -38601345 + AluJb SINE Alu 176 311 -1 688 272 48 32 chr4 145687326 145687576 -38601086 - MIR SINE MIR -16 246 2 243 278 113 60 chr4 145687585 145687718 -38600944 + L2 LINE L2 3174 3313 0 1825 143 4 11 chr4 145688479 145688758 -38599904 - AluSx SINE Alu -35 277 1 1380 188 0 65 chr4 145689183 145689507 -38599155 + AluJo SINE Alu 1 303 -9 200 211 0 0 chr4 145692380 145692418 -38596244 + (CATA)n Simple_repeat Simple_repeat 3 40 0 2147 305 78 52 chr4 145692957 145694510 -38594152 - L2 LINE L2 -1 3312 1730 209 256 0 0 chr4 145694639 145694682 -38593980 - L2 LINE L2 -15 3257 3215 182 197 105 40 chr4 145695729 145695805 -38592857 - MIR SINE MIR -129 133 53 253 94 0 0 chr4 145696134 145696166 -38592496 - L1MC4 LINE L1 -158 7884 7853 * 1197 211 70 3 chr4 145696164 145696448 -38592214 - L1MC4 LINE L1 -1235 6807 6505 240 337 22 0 chr4 145696564 145696656 -38592006 - MIR SINE MIR -138 124 31 406 351 118 45 chr4 145696735 145697048 -38591614 + L2 LINE L2 2928 3263 -9 7182 180 75 15 chr4 145697213 145700252 -38588410 + L1M1 LINE L1 1811 5037 -2528 2083 182 31 22 chr4 145700255 145700710 -38587952 + L1MA4 LINE L1 5835 6293 -7 262 274 60 43 chr4 145701513 145701605 -38587057 + MIR SINE MIR 33 129 -133 2083 131 6 46 chr4 145701605 145701956 -38586706 + MER1B DNA MER1_type 1 337 0 262 274 60 43 chr4 145701956 145701980 -38586682 + MIR SINE MIR 129 151 -111 857 221 113 0 chr4 145701980 145702202 -38586460 - MER46C DNA MER2_type 0 338 92 194 308 0 0 chr4 145702287 145702339 -38586323 + MIR SINE MIR 159 210 -52 225 83 0 0 chr4 145702778 145702814 -38585848 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 1033 164 19 42 chr4 145703074 145703288 -38585374 + MER3 DNA MER1_type 1 209 0 1031 231 21 16 chr4 145704936 145705178 -38583484 + MIR SINE MIR 20 262 0 22 0 0 0 chr4 145706494 145706516 -38582146 + AT_rich Low_complexity Low_complexity 1 22 0 195 333 95 19 chr4 145706795 145706900 -38581762 - L2 LINE L2 -4 3309 3197 180 328 90 37 chr4 145706965 145707099 -38581563 + MIR SINE MIR 31 171 -91 449 311 89 27 chr4 145707361 145707586 -38581076 + MIR SINE MIR 3 241 -21 280 273 48 109 chr4 145707838 145707956 -38580706 + MER5A DNA MER1_type 35 142 -47 1868 185 0 0 chr4 145707956 145708258 -38580404 + AluJb SINE Alu 1 302 -10 280 273 48 109 chr4 145708258 145708304 -38580358 + MER5A DNA MER1_type 142 189 0 1883 167 0 3 chr4 145708975 145709274 -38579388 + AluJo SINE Alu 1 298 -14 570 250 28 50 chr4 145709443 145709623 -38579039 - MER5B DNA MER1_type -2 176 1 247 328 35 70 chr4 145709652 145709881 -38578781 - L2 LINE L2 -706 2608 2388 * 585 299 120 0 chr4 145709875 145710059 -38578603 + MIR SINE MIR 47 252 -10 2055 135 7 0 chr4 145710091 145710379 -38578283 + AluSx SINE Alu 1 290 -22 420 20 0 0 chr4 145710379 145710398 -38578264 + (CA)n Simple_repeat Simple_repeat 1 68 0 420 20 0 0 chr4 145710398 145710447 -38578215 + (CA)n Simple_repeat Simple_repeat 2 50 0 2261 121 0 0 chr4 145710713 145711020 -38577642 + AluSx SINE Alu 6 312 0 385 287 80 0 chr4 145711149 145711299 -38577363 + L2 LINE L2 2934 3095 -218 2447 193 51 10 chr4 145711488 145711975 -38576687 - MER21B LTR ERV1 -30 833 327 432 262 39 0 chr4 145711957 145712060 -38576602 - MER21B LTR ERV1 -712 151 45 * 1859 170 196 72 chr4 145712069 145712433 -38576229 + LTR1B LTR ERV1 1 319 -466 4565 71 3 2 chr4 145712433 145713023 -38575639 - LTR10C LTR ERV1 0 591 1 1859 170 196 72 chr4 145713023 145713358 -38575304 + LTR1B LTR ERV1 319 785 0 283 172 62 16 chr4 145713414 145713478 -38575184 - MER21B LTR ERV1 -757 106 40 302 296 49 0 chr4 145713617 145713698 -38574964 + L2 LINE L2 3224 3308 -5 225 0 0 0 chr4 145715781 145715806 -38572856 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 282 56 0 0 chr4 145715805 145715841 -38572821 + (TG)n Simple_repeat Simple_repeat 1 36 0 190 329 0 53 chr4 145716401 145716477 -38572185 - L2 LINE L2 -8 3305 3234 868 161 93 6 chr4 145716885 145717047 -38571615 - MER69A DNA AcHobo -1 176 1 302 268 22 87 chr4 145718228 145718366 -38570296 + L2 LINE L2 3176 3304 -9 182 351 106 0 chr4 145719026 145719120 -38569542 - MIR SINE MIR 0 262 159 465 130 141 22 chr4 145719120 145719212 -38569450 + MER51A LTR ERV1 1 103 -531 * 1650 144 19 7 chr4 145719211 145719481 -38569181 + MER51B LTR ERV1 53 325 -52 319 207 270 9 chr4 145719600 145719711 -38568951 - MIR SINE MIR -101 161 22 258 269 13 13 chr4 145719737 145719815 -38568847 - MIR SINE MIR 0 262 185 516 313 7 21 chr4 145719817 145719977 -38568685 + MIR3 SINE MIR 15 173 -35 624 152 10 10 chr4 145720604 145720703 -38567959 + MSTB LTR MaLR 1 99 -327 342 48 0 0 chr4 145721215 145721257 -38567405 + MADE1 DNA Mariner 1 42 -38 381 270 113 22 chr4 145721287 145721472 -38567190 - L1ME LINE L1 -701 5463 5262 24 0 0 0 chr4 145721487 145721511 -38567151 + AT_rich Low_complexity Low_complexity 1 24 0 2101 144 66 0 chr4 145721519 145721881 -38566781 - L1PA16 LINE L1 -13 6153 5768 1050 130 0 13 chr4 145721981 145722135 -38566527 - AluSq/x SINE Alu -161 152 1 572 318 15 15 chr4 145722233 145722428 -38566234 - MIR SINE MIR -20 242 48 4859 32 0 0 chr4 145722841 145723429 -38565233 - L1P LINE L1 -3130 3016 2429 5322 24 2 0 chr4 145723429 145724044 -38564618 + L1PA3 LINE L1 5535 6155 0 22 0 0 0 chr4 145724203 145724225 -38564437 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 145724641 145724664 -38563998 + AT_rich Low_complexity Low_complexity 1 23 0 240 206 63 0 chr4 145726487 145726550 -38562112 + MIR3 SINE MIR 142 208 0 337 276 31 10 chr4 145727361 145727459 -38561203 - L2 LINE L2 0 3313 3214 251 346 54 105 chr4 145727536 145727819 -38560843 + L2 LINE L2 2958 3223 -49 760 177 30 81 chr4 145727819 145728017 -38560645 - MER5A DNA MER1_type 0 189 2 251 346 54 105 chr4 145728017 145728065 -38560597 + L2 LINE L2 3223 3272 0 182 205 26 0 chr4 145728220 145728259 -38560403 - MIR SINE MIR -10 252 213 5368 108 9 10 chr4 145728276 145729089 -38559573 - L1PA16 LINE L1 -9 6157 5346 781 265 18 18 chr4 145729089 145729312 -38559350 - MIR SINE MIR -37 225 3 211 163 0 47 chr4 145729407 145729450 -38559212 + G-rich Low_complexity Low_complexity 1 41 0 967 150 36 0 chr4 145729452 145729619 -38559043 - MER105 DNA DNA -31 173 1 2583 142 35 7 chr4 145730736 145731194 -38557468 - L1MA9 LINE L1 0 6312 5842 21 0 0 0 chr4 145732064 145732085 -38556577 + AT_rich Low_complexity Low_complexity 1 21 0 257 342 63 9 chr4 145732518 145732629 -38556033 + MIR SINE MIR 35 151 -111 219 268 18 0 chr4 145732843 145732899 -38555763 + (TATATG)n Simple_repeat Simple_repeat 2 58 0 210 325 0 75 chr4 145734423 145734503 -38554159 - L2 LINE L2 -52 3220 3147 2000 166 22 8 chr4 145734747 145735103 -38553559 + MLT1A1 LTR MaLR 5 365 0 256 266 32 12 chr4 145735413 145735497 -38553165 - MIR SINE MIR -46 162 75 672 255 27 11 chr4 145735745 145735929 -38552733 - L2 LINE L2 -7 3306 3120 2394 221 25 29 chr4 145735931 145736446 -38552216 + MLT2B3 LTR ERVL 1 513 -41 4399 271 71 16 chr4 145736455 145738120 -38550542 + L2 LINE L2 1554 3313 0 3458 271 136 25 chr4 145738117 145739472 -38549190 - L2 LINE L2 -1511 1803 299 * 1708 244 49 5 chr4 145739570 145740017 -38548645 - MLT1C LTR MaLR 0 467 1 781 163 0 0 chr4 145740070 145740193 -38548469 - FLAM_C SINE Alu -10 123 1 7283 40 13 13 chr4 145740676 145742183 -38546479 - L1PA5 LINE L1 -1 6153 4650 5422 30 0 0 chr4 145742183 145742825 -38545837 + L1P LINE L1 4044 4685 -1461 287 284 128 68 chr4 145743931 145744079 -38544583 - MIR3 SINE MIR -60 148 11 462 18 0 0 chr4 145745362 145745370 -38543292 + (CA)n Simple_repeat Simple_repeat 1 63 0 462 18 0 0 chr4 145745370 145745425 -38543237 + (CA)n Simple_repeat Simple_repeat 2 56 0 269 367 47 23 chr4 145746042 145746170 -38542492 - L2 LINE L2 -15 3257 3127 2405 253 110 72 chr4 145746193 145747494 -38541168 + L1M2 LINE L1 874 2174 -5035 574 280 142 18 chr4 145747823 145748041 -38540621 - MIR SINE MIR 0 262 18 274 286 26 0 chr4 145748892 145748969 -38539693 - L3 LINE CR1 -1 1576 1498 362 238 164 0 chr4 145749111 145749233 -38539429 - MIR SINE MIR 0 262 121 218 324 144 0 chr4 145749325 145749436 -38539226 - L3 LINE CR1 -193 1384 1258 222 246 46 0 chr4 145749542 145749607 -38539055 - L3 LINE CR1 -356 1221 1154 1631 197 56 61 chr4 145749671 145750133 -38538529 + LTR37B LTR ERV1 9 468 0 2632 122 36 10 chr4 145750786 145751203 -38537459 + MSTA LTR MaLR 1 428 0 311 265 103 22 chr4 145751748 145751884 -38536778 - L2 LINE L2 -7 3306 3160 506 317 113 69 chr4 145752011 145752740 -38535922 - L2 LINE L2 -337 2977 2217 279 328 81 68 chr4 145752755 145753362 -38535300 - L2 LINE L2 -1347 1967 1353 481 174 22 0 chr4 145753421 145753513 -38535149 - LTR40a LTR ERVL -11 508 415 * 1024 140 22 17 chr4 145753509 145753599 -38535063 - Tigger7 DNA MER2_type -405 2082 1994 216 0 0 0 chr4 145753599 145753623 -38535039 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1024 140 22 17 chr4 145753623 145753710 -38534952 - Tigger7 DNA MER2_type -493 1994 1904 243 0 0 0 chr4 145753710 145753737 -38534925 + (A)n Simple_repeat Simple_repeat 1 27 0 1097 205 19 8 chr4 145753738 145754044 -38534618 - LTR40b LTR ERVL -93 369 1 249 356 92 49 chr4 145754194 145754357 -38534305 - L3 LINE CR1 -978 599 430 411 322 154 7 chr4 145754370 145754519 -38534143 + MER5A DNA MER1_type 13 183 -6 708 197 51 0 chr4 145754539 145754676 -38533986 - MER58B DNA MER1_type 0 341 198 418 356 62 40 chr4 145754765 145755088 -38533574 - L3 LINE CR1 -1206 371 42 393 345 77 53 chr4 145755511 145755810 -38532852 - L3 LINE CR1 -1230 347 42 405 231 109 27 chr4 145756755 145756902 -38531760 - MIR SINE MIR 0 262 104 30 27 0 0 chr4 145757054 145757091 -38531571 + AT_rich Low_complexity Low_complexity 1 37 0 273 225 67 56 chr4 145757219 145757308 -38531354 + L2 LINE L2 3223 3312 -1 988 232 28 28 chr4 145757438 145757688 -38530974 - MIR SINE MIR -11 251 2 343 326 75 21 chr4 145757715 145757902 -38530760 - MIR3 SINE MIR -9 199 3 198 0 0 0 chr4 145757993 145758015 -38530647 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1561 65 10 0 chr4 145758988 145759188 -38529474 - L1PA8 LINE L1 0 6172 5971 22 35 0 0 chr4 145759275 145759304 -38529358 + AT_rich Low_complexity Low_complexity 1 29 0 279 173 0 0 chr4 145759661 145759713 -38528949 + (TA)n Simple_repeat Simple_repeat 2 53 0 243 0 0 0 chr4 145759714 145759741 -38528921 + (GA)n Simple_repeat Simple_repeat 1 27 0 440 244 78 17 chr4 145760783 145760898 -38527764 - L2 LINE L2 0 3313 3192 257 241 0 62 chr4 145761289 145761401 -38527261 - L1MC4a LINE L1 -1890 5918 5814 21 0 0 0 chr4 145761921 145761942 -38526720 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr4 145762042 145762076 -38526586 + AT_rich Low_complexity Low_complexity 1 34 0 260 264 0 0 chr4 145762539 145762592 -38526070 - Charlie8 DNA MER1_type -2363 54 2 310 291 172 13 chr4 145763061 145763212 -38525450 + MARNA DNA Mariner 43 217 -369 1959 203 114 0 chr4 145763705 145764169 -38524493 + Charlie1b DNA MER1_type 2 518 -5 310 327 85 12 chr4 145764539 145764704 -38523958 + L2 LINE L2 2738 2914 -400 568 280 42 51 chr4 145764772 145765008 -38523654 + L2 LINE L2 3080 3313 0 696 266 124 0 chr4 145765013 145765246 -38523416 - MIR SINE MIR 0 262 1 379 332 93 68 chr4 145766041 145766439 -38522223 - L2 LINE L2 -5 3267 2860 24 32 0 0 chr4 145767105 145767136 -38521526 + AT_rich Low_complexity Low_complexity 1 31 0 5143 118 39 7 chr4 145768381 145769187 -38519475 + L1PA16 LINE L1 5336 6166 0 29433 43 35 3 chr4 145769197 145772921 -38515741 + L1P LINE L1 1 3844 -2302 1792 164 10 13 chr4 145823040 145823339 -38465323 - AluJb SINE Alu -14 298 1 2212 96 7 3 chr4 145823349 145823640 -38465022 - AluSq SINE Alu -21 292 1 1769 163 31 23 chr4 145823732 145824082 -38464580 - MLT1B LTR MaLR -4 386 34 2328 115 0 0 chr4 145824893 145825197 -38463465 + AluSx SINE Alu 1 304 -8 1452 187 12 27 chr4 145825796 145826053 -38462609 + AluJb SINE Alu 49 301 -11 21 0 0 0 chr4 145826130 145826151 -38462511 + AT_rich Low_complexity Low_complexity 1 21 0 414 306 60 49 chr4 145826764 145826947 -38461715 - L2 LINE L2 0 3272 3088 891 266 65 9 chr4 145827150 145827364 -38461298 + MIR SINE MIR 16 241 -21 24 0 0 0 chr4 145828296 145828320 -38460342 + AT_rich Low_complexity Low_complexity 1 24 0 387 234 45 36 chr4 145829336 145829447 -38459215 + L1ME1 LINE L1 4009 4120 -2026 333 237 48 59 chr4 145829675 145829861 -38458801 + MER95 LTR ERV 246 429 -2 3599 210 74 35 chr4 145829866 145831817 -38456845 + L1ME1 LINE L1 4123 6151 -15 22 0 0 0 chr4 145831940 145831962 -38456700 + AT_rich Low_complexity Low_complexity 1 22 0 275 303 161 12 chr4 145832243 145832405 -38456257 + MIR SINE MIR 23 208 -54 26 101 0 0 chr4 145833054 145833143 -38455519 + AT_rich Low_complexity Low_complexity 1 89 0 361 282 68 49 chr4 145833355 145833518 -38455144 - MIR3 SINE MIR -28 180 15 22 0 0 0 chr4 145834183 145834205 -38454457 + AT_rich Low_complexity Low_complexity 1 22 0 332 223 54 84 chr4 145834371 145834479 -38454183 + L1ME LINE L1 5555 5658 -463 1766 173 0 0 chr4 145834479 145834762 -38453900 + AluJo SINE Alu 17 299 -13 332 223 54 84 chr4 145834762 145834819 -38453843 + L1ME LINE L1 5658 5715 -406 361 155 0 0 chr4 145834826 145834884 -38453778 - Alu SINE Alu 0 302 245 206 42 0 0 chr4 145834984 145835008 -38453654 + (GGAA)n Simple_repeat Simple_repeat 1 24 0 2480 65 0 10 chr4 145835197 145835506 -38453156 + AluY SINE Alu 1 306 -5 1648 188 6 13 chr4 145835617 145835931 -38452731 - AluJb SINE Alu 0 312 1 243 283 115 26 chr4 145836128 145836241 -38452421 - MIR3 SINE MIR -46 162 40 535 108 0 0 chr4 145836688 145836762 -38451900 + Alu SINE Alu 224 297 -15 21 0 0 0 chr4 145837087 145837108 -38451554 + AT_rich Low_complexity Low_complexity 1 21 0 200 118 0 29 chr4 145837223 145837257 -38451405 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 278 318 49 76 chr4 145837352 145837575 -38451087 - MIR SINE MIR -24 238 22 222 360 7 43 chr4 145838003 145838142 -38450520 - L2 LINE L2 -1355 1959 1826 225 282 161 24 chr4 145838518 145838642 -38450020 - MIR3 SINE MIR -62 146 6 429 81 0 0 chr4 145839028 145839090 -38449572 + (CA)n Simple_repeat Simple_repeat 2 63 0 1606 224 127 12 chr4 145839541 145840137 -38448525 + MER39 LTR ERV1 1 704 -3 2168 110 28 0 chr4 145840869 145841159 -38447503 + AluSx SINE Alu 1 298 -14 207 0 0 0 chr4 145841175 145841198 -38447464 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 413 294 167 15 chr4 145841379 145841583 -38447079 - MIR SINE MIR 0 262 28 2110 146 10 0 chr4 145841770 145842079 -38446583 + AluSx SINE Alu 1 312 0 369 43 0 0 chr4 145842126 145842173 -38446489 + (TG)n Simple_repeat Simple_repeat 2 48 0 486 316 139 8 chr4 145842777 145842985 -38445677 + MIR SINE MIR 18 262 0 206 388 10 0 chr4 145843850 145843948 -38444714 - L3 LINE CR1 -8 1569 1471 22 70 0 0 chr4 145844074 145844117 -38444545 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr4 145845151 145845179 -38443483 + AT_rich Low_complexity Low_complexity 1 28 0 1880 137 4 4 chr4 145846041 145846347 -38442315 + AluSx SINE Alu 15 320 0 219 204 0 0 chr4 145846461 145846505 -38442157 + L2 LINE L2 3168 3211 -61 248 132 0 0 chr4 145846739 145846777 -38441885 - L2 LINE L2 -4 3309 3272 245 261 15 0 chr4 145846837 145846902 -38441760 - L2 LINE L2 -48 3224 3159 1018 208 14 23 chr4 145847097 145847318 -38441344 + MER20 DNA MER1_type 1 219 0 1723 193 113 24 chr4 145847384 145847808 -38440854 + MLT1C LTR MaLR 6 467 0 408 66 91 8 chr4 145847913 145848034 -38440628 + (TA)n Simple_repeat Simple_repeat 2 132 0 183 153 63 18 chr4 145848059 145848170 -38440492 + (TATAA)n Simple_repeat Simple_repeat 4 119 0 194 274 0 39 chr4 145848206 145848257 -38440405 - L2 LINE L2 -50 3263 3215 1079 172 122 107 chr4 145852647 145853047 -38435615 - MLT1D LTR MaLR 0 505 100 834 143 16 66 chr4 145853047 145853229 -38435433 - Tigger7 DNA MER2_type 0 2587 2415 2244 131 38 48 chr4 145853229 145853512 -38435150 - Tigger3(Golem) DNA MER2_type 0 3028 2749 669 217 0 23 chr4 145853512 145853641 -38435021 + FLAM_A SINE Alu 1 126 -7 2244 131 38 48 chr4 145853641 145853753 -38434909 - Tigger3(Golem) DNA MER2_type -279 2749 2637 1613 262 39 7 chr4 145853857 145854402 -38434260 - L1M4 LINE L1 -2325 3821 3260 1173 178 32 22 chr4 145854411 145854494 -38434168 + MER58B DNA MER1_type 1 82 -2338 2001 61 36 7 chr4 145854494 145854774 -38433888 + L1MA2 LINE L1 6017 6304 0 1173 178 32 22 chr4 145854774 145855006 -38433656 + MER58B DNA MER1_type 82 303 -38 1975 254 143 25 chr4 145855030 145855679 -38432983 + MER21B LTR ERV1 13 738 -125 553 196 12 12 chr4 145855737 145855905 -38432757 - L1M4 LINE L1 -2906 3240 3073 668 252 19 0 chr4 145855923 145856078 -38432584 - MER63 DNA MER1_type -277 785 2 249 372 76 0 chr4 145856224 145856369 -38432293 + L3b LINE CR1 1422 1577 -6 365 328 109 11 chr4 145857510 145857693 -38430969 + MIR3 SINE MIR 3 203 -5 223 189 14 14 chr4 145858957 145859031 -38429631 + (TA)n Simple_repeat Simple_repeat 1 74 0 2379 89 0 0 chr4 145860095 145860398 -38428264 - AluSx SINE Alu -9 303 1 22 35 0 0 chr4 145861085 145861114 -38427548 + AT_rich Low_complexity Low_complexity 1 29 0 3867 251 63 26 chr4 145862100 145863325 -38425337 + L2 LINE L2 1103 2372 -942 711 247 82 96 chr4 145863327 145863728 -38424934 + MLT1I LTR MaLR 1 408 -1 736 175 147 0 chr4 145863729 145863906 -38424756 + L2 LINE L2 2372 2574 -740 1577 170 35 35 chr4 145863906 145864351 -38424311 + L1ME1 LINE L1 5164 5609 -743 1638 203 67 74 chr4 145864465 145865032 -38423630 + L1ME1 LINE L1 5599 6161 -5 2432 79 0 0 chr4 145866218 145866522 -38422140 + AluY SINE Alu 1 304 -7 2270 158 43 9 chr4 145867098 145867517 -38421145 + Tigger2a DNA MER2_type 1 433 -1 591 229 54 36 chr4 145867778 145867944 -38420718 - MIR SINE MIR -16 246 78 660 134 10 0 chr4 145868153 145868250 -38420412 + AluSg/x SINE Alu 194 291 -19 285 100 0 0 chr4 145868712 145868762 -38419900 + (TTTTTG)n Simple_repeat Simple_repeat 1 50 0 723 139 38 0 chr4 145868915 145869123 -38419539 - L1MA9 LINE L1 -1 6311 6047 2420 84 0 3 chr4 145869260 145869568 -38419094 + AluSc SINE Alu 1 307 -2 1022 328 114 12 chr4 145870454 145871042 -38417620 + L2 LINE L2 2330 2977 -337 259 295 26 0 chr4 145871208 145871286 -38417376 + L2 LINE L2 3234 3313 0 266 333 34 34 chr4 145871341 145871458 -38417204 - MIR SINE MIR -112 150 34 1939 112 10 17 chr4 145872243 145872539 -38416123 - AluSc SINE Alu -15 294 1 410 300 39 0 chr4 145872918 145873048 -38415614 - MIR SINE MIR -10 252 118 22 35 0 0 chr4 145873872 145873901 -38414761 + AT_rich Low_complexity Low_complexity 1 29 0 2254 106 0 0 chr4 145873950 145874251 -38414411 - AluSq SINE Alu -10 303 3 730 269 75 7 chr4 145874255 145874537 -38414125 + L1ME4a LINE L1 5526 5826 -295 235 333 22 22 chr4 145874533 145874623 -38414039 + L1MC4a LINE L1 5494 5583 -538 * 183 200 0 0 chr4 145874626 145874661 -38414001 - L2 LINE L2 0 3272 3238 878 284 41 9 chr4 145874672 145874992 -38413670 + L1MC4a LINE L1 5572 5901 -1907 26 50 0 0 chr4 145875224 145875264 -38413398 + AT_rich Low_complexity Low_complexity 1 40 0 1652 149 7 25 chr4 145877054 145877335 -38411327 - AluJb SINE Alu -36 276 1 362 151 14 0 chr4 145877746 145877819 -38410843 + (TA)n Simple_repeat Simple_repeat 2 75 0 213 265 12 48 chr4 145878258 145878341 -38410321 - MIR SINE MIR 0 262 183 1065 153 0 21 chr4 145878439 145878629 -38410033 - MER46A DNA MER2_type -4 232 47 358 276 104 22 chr4 145879132 145879266 -38409396 - MIR SINE MIR -111 151 7 21 36 0 0 chr4 145882101 145882129 -38406533 + AT_rich Low_complexity Low_complexity 1 28 0 183 162 0 0 chr4 145883879 145883916 -38404746 + (TG)n Simple_repeat Simple_repeat 2 38 0 1377 154 19 19 chr4 145886886 145887153 -38401509 + L1MB3 LINE L1 5866 6132 -51 839 265 109 24 chr4 145887767 145888190 -38400472 - MLT1J LTR MaLR -41 470 12 703 255 0 19 chr4 145888190 145888398 -38400264 + L1M2a LINE L1 4 207 -6961 4542 242 44 25 chr4 145888478 145888801 -38399861 + L1M2a LINE L1 820 1135 -6032 189 0 0 0 chr4 145888801 145888822 -38399840 + (CTG)n Simple_repeat Simple_repeat 3 23 0 4542 242 44 25 chr4 145888822 145891469 -38397193 + L1M2a LINE L1 1135 3579 -3588 1673 183 7 14 chr4 145891469 145891758 -38396904 + AluJo SINE Alu 1 287 -25 4542 242 44 25 chr4 145891758 145891828 -38396834 + L1M2a LINE L1 3579 3646 -3521 734 228 9 40 chr4 145891841 145892065 -38396597 + L1MA9 LINE L1 5887 6103 -209 206 207 12 73 chr4 145893251 145893333 -38395329 + A-rich Low_complexity Low_complexity 5 81 0 219 293 35 0 chr4 145895036 145895094 -38393568 + MIR SINE MIR 82 141 -67 596 194 0 62 chr4 145895163 145895307 -38393355 + FLAM_C SINE Alu 1 135 -8 2028 118 78 12 chr4 145895446 145895854 -38392808 - Tigger3(Golem) DNA MER2_type -525 2504 2070 362 272 0 0 chr4 145895853 145895934 -38392728 - Tigger3(Golem) DNA MER2_type -2882 147 67 * 1075 140 18 12 chr4 145895935 145896099 -38392563 - FRAM SINE Alu -11 165 1 271 161 290 0 chr4 145896099 145896161 -38392501 - Tigger3(Golem) DNA MER2_type -2948 81 2 939 136 98 38 chr4 145896175 145896359 -38392303 - Tigger7 DNA MER2_type -415 318 124 927 156 5 16 chr4 145896540 145896726 -38391936 + LTR2 LTR ERV1 266 449 0 30353 78 6 8 chr4 145896726 145900927 -38387735 + HERVE LTR ERV1 1 4192 -3621 18893 37 8 0 chr4 145900927 145904018 -38384644 + L1PA4 LINE L1 3048 6154 -1 260 351 80 11 chr4 145904205 145904467 -38384195 - L2 LINE L2 -838 2476 2197 382 267 226 9 chr4 145904725 145904946 -38383716 - L2 LINE L2 0 3313 3045 1163 223 49 37 chr4 145904946 145905296 -38383366 - MLT1A1 LTR MaLR 0 365 12 401 312 7 78 chr4 145905303 145905457 -38383205 - L2 LINE L2 -264 3049 2907 2047 168 53 55 chr4 145905457 145905793 -38382869 - MLT1D LTR MaLR 0 505 169 1886 168 49 55 chr4 145905793 145906263 -38382399 + MLT1C LTR MaLR 1 467 0 2047 168 53 55 chr4 145906263 145906432 -38382230 - MLT1D LTR MaLR -336 169 1 237 287 69 11 chr4 145906509 145906596 -38382066 - L2 LINE L2 -497 2817 2726 315 43 106 0 chr4 145906600 145906647 -38382015 + MADE1 DNA Mariner 28 79 -1 2840 105 11 31 chr4 145906681 145907130 -38381532 - MLT2A2 LTR ERVL -2 451 12 9844 62 12 2 chr4 145907131 145908256 -38380406 - HERVL-A2 LTR ERVL 0 5654 4513 2613 62 3 0 chr4 145908256 145908565 -38380097 - AluY SINE Alu -1 310 1 9844 62 12 2 chr4 145908565 145908737 -38379925 - HERVL-A2 LTR ERVL -1141 4513 4344 586 53 0 0 chr4 145908737 145908813 -38379849 - MLT2A2 LTR ERVL -377 76 1 490 277 147 4 chr4 145908818 145909049 -38379613 - L2 LINE L2 -896 2418 2155 1768 169 33 22 chr4 145909061 145909422 -38379240 - MLT1A1 LTR MaLR 0 365 1 270 378 7 34 chr4 145909602 145909750 -38378912 + L2 LINE L2 2918 3061 -211 17029 177 13 27 chr4 145910107 145911852 -38376810 - L1PA13 LINE L1 -4 7597 5828 225 65 0 0 chr4 145911852 145911883 -38376779 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 17029 177 13 27 chr4 145911883 145915373 -38373289 - L1PA13 LINE L1 -1773 5828 2439 5217 257 54 38 chr4 145915371 145918127 -38370535 - L1PA13 LINE L1 -5013 2568 11 * 706 319 149 8 chr4 145918245 145918634 -38370028 - L2 LINE L2 -916 2398 1955 685 270 265 29 chr4 145918704 145919172 -38369490 + MLT1F1 LTR MaLR 1 592 -1 229 306 14 0 chr4 145919206 145919278 -38369384 - L2 LINE L2 -1510 1804 1732 2285 116 0 3 chr4 145919313 145919623 -38369039 - AluSx SINE Alu -3 309 1 344 276 110 8 chr4 145919875 145920002 -38368660 - MIR SINE MIR -95 167 28 471 301 86 31 chr4 145920006 145920169 -38368493 + MIR SINE MIR 2 173 -89 2074 133 85 48 chr4 145920253 145920293 -38368369 - MSTA LTR MaLR 0 428 391 1748 153 7 14 chr4 145920293 145920587 -38368075 + AluSx SINE Alu 21 312 0 2074 133 85 48 chr4 145920587 145920959 -38367703 - MSTA LTR MaLR -37 391 1 692 259 99 19 chr4 145922723 145922986 -38365676 + MLT1J LTR MaLR 2 285 -226 379 270 32 24 chr4 145923020 145923146 -38365516 + MLT1J LTR MaLR 376 502 -9 40078 38 3 3 chr4 145923296 145929450 -38359212 - L1PA3 LINE L1 0 6155 2 268 206 162 0 chr4 145929963 145930031 -38358631 + MER58A DNA MER1_type 8 86 -21 * 501 73 0 0 chr4 145930027 145930095 -38358567 - THE1C LTR MaLR -307 68 1 228 241 138 0 chr4 145931945 145932003 -38356659 + MIR SINE MIR 150 215 -47 3633 97 35 100 chr4 145934590 145935269 -38353393 + MER41B LTR ERV1 1 635 0 278 288 37 2 chr4 145935284 145935379 -38353283 - MIR SINE MIR -78 130 34 1431 133 16 0 chr4 145935466 145935722 -38352940 + L1MA5 LINE L1 6041 6300 0 1918 154 10 13 chr4 145935837 145936149 -38352513 + AluJb SINE Alu 1 311 -1 370 252 14 0 chr4 145936389 145936432 -38352230 + (TA)n Simple_repeat Simple_repeat 2 43 -99 308 165 25 13 chr4 145936432 145936511 -38352151 + L1MA4 LINE L1 6205 6284 -16 370 252 14 0 chr4 145936511 145936606 -38352056 + (TA)n Simple_repeat Simple_repeat 43 142 0 198 231 33 0 chr4 145936650 145936741 -38351921 + (TA)n Simple_repeat Simple_repeat 1 94 0 266 291 18 55 chr4 145937868 145937978 -38350684 + L2 LINE L2 2986 3091 -181 292 250 75 50 chr4 145938663 145938783 -38349879 - MIR SINE MIR -59 203 81 492 279 16 0 chr4 145939274 145939396 -38349266 + L2 LINE L2 3190 3313 0 2220 174 120 5 chr4 145939440 145939882 -38348780 - MLT2B2 LTR ERVL -2 513 21 220 247 74 37 chr4 145939920 145940001 -38348661 - L2 LINE L2 0 3272 3189 349 287 79 0 chr4 145940018 145940119 -38348543 - L2 LINE L2 -226 3087 2979 243 302 75 0 chr4 145940117 145940223 -38348439 + MIR SINE MIR 149 262 0 * 9184 24 1 0 chr4 145940684 145942538 -38346124 - L1PA4 LINE L1 0 6155 4298 5599 36 1 0 chr4 145942538 145943241 -38345421 + L1PA4 LINE L1 3579 4282 -1864 391 255 152 11 chr4 145943381 145943565 -38345097 - L1ME4a LINE L1 -7 6114 5905 418 361 105 13 chr4 145943675 145943988 -38344674 - L1MC4a LINE L1 -1923 5885 5544 25 31 0 0 chr4 145944587 145944619 -38344043 + AT_rich Low_complexity Low_complexity 1 32 0 189 0 0 0 chr4 145945955 145945976 -38342686 + (TC)n Simple_repeat Simple_repeat 2 22 0 2270 97 3 13 chr4 145946392 145946702 -38341960 - AluSx SINE Alu -5 307 1 1956 155 60 0 chr4 145948152 145948468 -38340194 - MER1B DNA MER1_type -2 335 1 21 0 0 0 chr4 145949123 145949144 -38339518 + AT_rich Low_complexity Low_complexity 1 21 0 5118 280 122 55 chr4 145949543 145949693 -38338969 - L2 LINE L2 -4 3309 3171 2034 151 0 0 chr4 145949693 145949997 -38338665 + AluJb SINE Alu 1 304 -8 5118 280 122 55 chr4 145949997 145950417 -38338245 - L2 LINE L2 -142 3171 2781 1141 112 6 0 chr4 145950417 145950578 -38338084 + U1 snRNA snRNA 1 162 -3 5118 280 122 55 chr4 145950578 145951608 -38337054 - L2 LINE L2 -532 2781 1822 1845 161 3 13 chr4 145951608 145951913 -38336749 - AluJo SINE Alu -9 303 2 5118 280 122 55 chr4 145951913 145953287 -38335375 - L2 LINE L2 -1491 1822 130 3921 118 9 20 chr4 145953734 145953828 -38334834 + L1MA4 LINE L1 5644 5737 -563 2376 87 0 3 chr4 145953828 145954127 -38334535 + AluY SINE Alu 1 298 -13 3921 118 9 20 chr4 145954127 145954691 -38333971 + L1MA4 LINE L1 5737 6295 -5 1583 126 0 9 chr4 145955539 145955770 -38332892 + MER30 DNA MER1_type 2 230 0 374 250 141 0 chr4 145956365 145956493 -38332169 - MER5A DNA MER1_type 0 189 44 240 301 0 48 chr4 145956694 145956797 -38331865 + L2 LINE L2 1325 1422 -1892 2178 281 72 15 chr4 145957023 145957966 -38330696 + L2 LINE L2 2272 3299 -14 3578 50 15 7 chr4 145958131 145958851 -38329811 - L1P2 LINE L1 -412 5742 5020 29 0 0 0 chr4 145958860 145958889 -38329773 + AT_rich Low_complexity Low_complexity 1 29 0 658 260 28 6 chr4 145959218 145959395 -38329267 + MIR SINE MIR 4 184 -78 405 290 120 44 chr4 145959537 145959720 -38328942 + L2 LINE L2 3073 3269 -3 2048 285 58 26 chr4 145959851 145960898 -38327764 - L2 LINE L2 -106 3207 2118 1426 250 100 38 chr4 145960939 145961519 -38327143 - L2 LINE L2 -2657 657 42 3212 143 16 26 chr4 145962561 145963171 -38325491 + L1MB3 LINE L1 5573 6176 -7 661 145 52 119 chr4 145963183 145963273 -38325389 - L1MB4 LINE L1 -229 5951 5857 2186 109 3 0 chr4 145963273 145963566 -38325096 + AluSx SINE Alu 1 294 -18 661 145 52 119 chr4 145963566 145963617 -38325045 - L1MB4 LINE L1 -323 5857 5824 7313 40 1 0 chr4 145963617 145965300 -38323362 + L1PA5 LINE L1 4453 6139 -15 661 145 52 119 chr4 145965300 145965350 -38323312 - L1MB4 LINE L1 -356 5824 5772 * 832 187 39 39 chr4 145965348 145965397 -38323265 + L1MB7 LINE L1 5976 6024 -160 1899 160 16 10 chr4 145965397 145965703 -38322959 - AluJb SINE Alu 0 312 5 832 187 39 39 chr4 145965703 145965856 -38322806 + L1MB7 LINE L1 6023 6178 -6 207 224 20 0 chr4 145965878 145965927 -38322735 + L3 LINE CR1 971 1020 -557 * 324 293 53 15 chr4 145965920 145966053 -38322609 + MIR SINE MIR 6 143 -119 2620 93 25 3 chr4 145966485 145966841 -38321821 - THE1B LTR MaLR 0 364 1 10271 92 26 65 chr4 145966841 145968484 -38320178 - THE1B-int LTR MaLR 0 1580 1 2055 123 37 9 chr4 145968489 145968838 -38319824 - THE1B LTR MaLR -5 359 1 374 291 68 8 chr4 145970019 145970136 -38318526 + MLT1K LTR MaLR 106 229 -359 439 269 89 111 chr4 145970189 145970549 -38318113 - LTR16C LTR ERVL -139 352 1 420 339 67 36 chr4 145970624 145970819 -38317843 - L2 LINE L2 0 3272 3072 204 241 0 17 chr4 145970988 145971046 -38317616 + (TATATG)n Simple_repeat Simple_repeat 2 58 0 427 268 52 43 chr4 145972793 145973024 -38315638 - L1ME LINE L1 -337 5784 5552 263 368 76 57 chr4 145973130 145973445 -38315217 + L2 LINE L2 2876 3196 -76 277 345 112 35 chr4 145973705 145973902 -38314760 - L2 LINE L2 -4 3268 3057 619 261 101 15 chr4 145974570 145974769 -38313893 + MIR SINE MIR 47 262 0 405 263 34 0 chr4 145975330 145975448 -38313214 + MIR SINE MIR 141 262 0 549 226 34 27 chr4 145975538 145975684 -38312978 + L2 LINE L2 2568 2714 -600 426 293 15 41 chr4 145975898 145976168 -38312494 + L1M4 LINE L1 2311 2573 -3573 4346 57 0 4 chr4 145976404 145976948 -38311714 + L1PA6 LINE L1 5605 6146 -8 30 59 0 0 chr4 145976954 145977005 -38311657 + AT_rich Low_complexity Low_complexity 1 51 0 21 36 0 0 chr4 145977570 145977598 -38311064 + AT_rich Low_complexity Low_complexity 1 28 0 315 191 16 16 chr4 145978316 145978379 -38310283 - MER5B DNA MER1_type -6 172 110 1397 306 73 25 chr4 145978512 145979439 -38309223 + L2 LINE L2 2330 3311 -2 2188 110 36 0 chr4 145979669 145979970 -38308692 - AluSq SINE Alu -1 312 1 3456 109 58 2 chr4 145982155 145982688 -38305974 + L1PA13 LINE L1 5592 6154 -9 2237 71 16 16 chr4 145982691 145983000 -38305662 + AluY SINE Alu 3 311 0 225 94 0 0 chr4 145983232 145983264 -38305398 - MLT2B2 LTR ERVL 0 515 484 315 196 23 0 chr4 145983264 145983397 -38305265 + (TA)n Simple_repeat Simple_repeat 1 136 0 691 185 53 0 chr4 145983409 145983564 -38305098 - MLT2B2 LTR ERVL -41 474 265 458 153 12 0 chr4 145983567 145983652 -38305010 - MLT2B2 LTR ERVL -429 86 1 2150 142 101 3 chr4 145983944 145984332 -38304330 + MSTB LTR MaLR 1 426 0 720 239 102 19 chr4 145985868 145986073 -38302589 + MIR SINE MIR 31 252 -10 533 253 132 0 chr4 145986116 145986298 -38302364 + MER58C DNA MER1_type 9 214 -1 329 159 0 0 chr4 145986315 145986378 -38302284 - L1MEc LINE L1 -4109 2287 2225 316 65 0 0 chr4 145986392 145986438 -38302224 - MADE1 DNA Mariner -1 79 34 323 163 0 0 chr4 145986450 145986499 -38302163 + Tigger5 DNA MER2_type 2273 2321 -2 379 245 96 27 chr4 145986547 145986961 -38301701 - L1M1 LINE L1 -4516 1743 1343 34 24 0 0 chr4 145987337 145987378 -38301284 + AT_rich Low_complexity Low_complexity 1 41 0 16963 26 0 0 chr4 145988548 145990661 -38298001 - L1HS LINE L1 -1253 4893 2781 7699 12 0 0 chr4 145990658 145991911 -38296751 + L1HS LINE L1 4903 6155 0 * 285 218 55 0 chr4 145993500 145993555 -38295107 + L2 LINE L2 3254 3311 -2 1933 146 0 0 chr4 145993820 145994095 -38294567 - AluSx SINE Alu -37 275 1 1234 114 29 0 chr4 145995583 145995758 -38292904 - AluSg/x SINE Alu -16 296 117 746 77 0 0 chr4 145995858 145995962 -38292700 + MLT2A2 LTR ERVL 350 453 0 21 57 0 0 chr4 145997185 145997220 -38291442 + AT_rich Low_complexity Low_complexity 1 35 0 677 206 20 7 chr4 145997706 145997852 -38290810 - MLT1A1 LTR MaLR -217 148 1 2505 28 3 31 chr4 145998074 145998398 -38290264 + L1PA2 LINE L1 5841 6155 0 362 277 123 40 chr4 145999230 145999374 -38289288 - L1ME4a LINE L1 -2 6119 5988 1951 135 0 50 chr4 145999374 145999692 -38288970 - AluSx SINE Alu -10 302 1 362 277 123 40 chr4 145999692 145999872 -38288790 - L1ME4a LINE L1 -133 5988 5768 561 204 0 0 chr4 145999908 146000006 -38288656 - FLAM_A SINE Alu -32 110 13 248 227 21 52 chr4 146000588 146000685 -38287977 + GA-rich Low_complexity Low_complexity 1 94 0 237 242 30 40 chr4 146001484 146001583 -38287079 + MER103 DNA DNA 65 162 -4 187 244 35 128 chr4 146001638 146001724 -38286938 - L2 LINE L2 -42 3271 3194 537 301 136 36 chr4 146001801 146002103 -38286559 - MER115 DNA AcHobo -68 625 294 1637 110 39 0 chr4 146002471 146002726 -38285936 + MLT2A2 LTR ERVL 1 265 -188 27 0 0 0 chr4 146003211 146003238 -38285424 + AT_rich Low_complexity Low_complexity 1 27 0 1956 108 84 0 chr4 146003247 146003533 -38285129 + AluSx SINE Alu 1 310 -2 5427 169 21 13 chr4 146003658 146004796 -38283866 - L1PA16 LINE L1 0 6166 5038 1831 95 12 4 chr4 146004796 146005039 -38283623 - AluSq SINE Alu -17 296 52 5427 169 21 13 chr4 146005039 146005057 -38283605 - L1PA16 LINE L1 -1128 5038 5022 2081 149 3 0 chr4 146005057 146005365 -38283297 + AluSx SINE Alu 1 309 -3 5427 169 21 13 chr4 146005365 146005969 -38282693 - L1PA16 LINE L1 -1144 5022 4391 189 0 0 0 chr4 146005969 146005990 -38282672 + (TG)n Simple_repeat Simple_repeat 2 22 0 5427 169 21 13 chr4 146005990 146006259 -38282403 - L1PA16 LINE L1 -1775 4391 4125 515 286 54 18 chr4 146008598 146008766 -38279896 + MIR SINE MIR 8 181 -81 245 159 174 0 chr4 146008770 146008820 -38279842 + L1 LINE L1 4608 4648 -1498 372 22 0 0 chr4 146008820 146008865 -38279797 + (CA)n Simple_repeat Simple_repeat 1 45 0 245 159 174 0 chr4 146008865 146008883 -38279779 + L1 LINE L1 4648 4688 -1458 640 251 89 0 chr4 146009248 146009451 -38279211 - L1ME4a LINE L1 -262 5859 5639 2721 32 0 0 chr4 146009451 146009759 -38278903 + AluY SINE Alu 1 308 -3 1351 192 36 88 chr4 146009869 146010254 -38278408 + MLT1A1 LTR MaLR 1 365 0 268 350 33 11 chr4 146010493 146010712 -38277950 - L1ME4a LINE L1 -504 5658 5432 266 331 46 31 chr4 146011043 146011173 -38277489 - L2 LINE L2 0 3313 3182 513 258 20 26 chr4 146012007 146012158 -38276504 - MIR SINE MIR -2 260 111 437 249 67 12 chr4 146012867 146013032 -38275630 - LTR67 LTR ERVL -1 556 383 22 0 0 0 chr4 146015255 146015277 -38273385 + AT_rich Low_complexity Low_complexity 1 22 0 231 227 0 0 chr4 146016675 146016741 -38271921 + (TG)n Simple_repeat Simple_repeat 2 67 0 333 0 0 0 chr4 146020871 146020908 -38267754 + (TG)n Simple_repeat Simple_repeat 1 37 0 231 88 0 0 chr4 146021289 146021325 -38267337 + (TG)n Simple_repeat Simple_repeat 1 70 0 231 88 0 0 chr4 146021325 146021359 -38267303 + (TG)n Simple_repeat Simple_repeat 2 35 0 252 303 0 0 chr4 146022129 146022205 -38266457 + G-rich Low_complexity Low_complexity 1 76 0 381 189 0 0 chr4 146022642 146022732 -38265930 + (CGG)n Simple_repeat Simple_repeat 2 91 0 22 0 0 0 chr4 146023071 146023093 -38265569 + AT_rich Low_complexity Low_complexity 1 22 0 321 26 0 0 chr4 146023431 146023469 -38265193 + (CCA)n Simple_repeat Simple_repeat 1 38 0 23 0 0 0 chr4 146024684 146024707 -38263955 + AT_rich Low_complexity Low_complexity 1 23 0 234 0 0 0 chr4 146025170 146025196 -38263466 + (CA)n Simple_repeat Simple_repeat 2 27 0 459 0 0 0 chr4 146026355 146026406 -38262256 + (TC)n Simple_repeat Simple_repeat 1 51 0 371 191 0 11 chr4 146029745 146029834 -38258828 + CT-rich Low_complexity Low_complexity 3 90 0 225 0 0 0 chr4 146030778 146030803 -38257859 + (TG)n Simple_repeat Simple_repeat 2 26 0 1568 159 27 60 chr4 146031735 146032036 -38256626 + AluJo SINE Alu 3 293 -19 1868 156 10 13 chr4 146032724 146033025 -38255637 - AluJo SINE Alu -12 300 1 1958 140 19 7 chr4 146033854 146034161 -38254501 + AluSx SINE Alu 1 311 -1 376 256 24 49 chr4 146034211 146034375 -38254287 - HAL1b LINE L1 -2 1346 1187 3821 195 38 8 chr4 146034479 146035179 -38253483 - L1ME1 LINE L1 -5 6161 5410 1996 108 4 4 chr4 146035179 146035447 -38253215 - AluSc SINE Alu -18 291 24 3821 195 38 8 chr4 146035447 146035871 -38252791 - L1ME1 LINE L1 -756 5410 5000 816 296 34 47 chr4 146035872 146036246 -38252416 - L1ME4a LINE L1 -227 5894 5526 1638 185 125 3 chr4 146036246 146036597 -38252065 - MSTD LTR MaLR 0 396 3 816 296 34 47 chr4 146036597 146036691 -38251971 - L1ME4a LINE L1 -595 5526 5432 459 210 8 42 chr4 146036698 146036817 -38251845 - L1M3 LINE L1 -549 5634 5520 275 270 105 20 chr4 146037185 146037385 -38251277 - L1ME1 LINE L1 -1140 5006 4790 5789 147 27 5 chr4 146037901 146039367 -38249295 - L1PA16 LINE L1 -9 6157 4661 25 31 0 0 chr4 146040140 146040172 -38248490 + AT_rich Low_complexity Low_complexity 1 32 0 1616 263 74 17 chr4 146040634 146041145 -38247517 + MLT1H1 LTR MaLR 4 499 -56 337 202 0 21 chr4 146041338 146041432 -38247230 + CT-rich Low_complexity Low_complexity 2 93 0 494 286 25 15 chr4 146041445 146041641 -38247021 - L1MC4a LINE L1 -1979 5898 5701 5084 198 86 27 chr4 146041783 146042057 -38246605 + Charlie1a DNA MER1_type 7 264 -2497 2378 67 7 0 chr4 146042057 146042357 -38246305 + AluY SINE Alu 1 302 -9 5084 198 86 27 chr4 146042357 146042436 -38246226 + Charlie1a DNA MER1_type 264 337 -2424 17849 67 11 28 chr4 146042436 146045655 -38243007 + L1PA6 LINE L1 2954 6154 0 5084 198 86 27 chr4 146045655 146046608 -38242054 + Charlie1a DNA MER1_type 337 1400 -1361 1966 146 50 19 chr4 146046608 146046972 -38241690 + THE1C LTR MaLR 1 375 0 5084 198 86 27 chr4 146046972 146047028 -38241634 + Charlie1a DNA MER1_type 1400 1451 -4 561 306 92 27 chr4 146049120 146049673 -38238989 - L1MC4a LINE L1 -930 5285 4697 3197 207 51 43 chr4 146049705 146050650 -38238012 - L1ME2 LINE L1 -9 6155 5204 2142 119 0 19 chr4 146050653 146050971 -38237691 - AluSx SINE Alu 0 312 1 378 280 101 63 chr4 146051008 146051433 -38237229 - L1MC4a LINE L1 -4696 1700 1260 237 163 0 0 chr4 146051472 146051521 -38237141 + (TG)n Simple_repeat Simple_repeat 2 50 0 276 253 43 56 chr4 146051521 146051571 -38237091 - L1MC4a LINE L1 -5156 1240 1191 2254 100 21 0 chr4 146051571 146051861 -38236801 - AluSq SINE Alu -17 296 1 276 253 43 56 chr4 146051861 146051972 -38236690 - L1MC4a LINE L1 -5205 1191 1081 333 0 0 0 chr4 146053759 146053796 -38234866 + (CA)n Simple_repeat Simple_repeat 1 37 0 200 268 18 18 chr4 146055658 146055714 -38232948 + CT-rich Low_complexity Low_complexity 3 58 0 216 0 0 0 chr4 146056329 146056353 -38232309 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 213 262 0 48 chr4 146056450 146056534 -38232128 + CT-rich Low_complexity Low_complexity 1 80 0 24 53 0 0 chr4 146059001 146059039 -38229623 + GC_rich Low_complexity Low_complexity 1 38 0 615 71 0 0 chr4 146060712 146060797 -38227865 + (TA)n Simple_repeat Simple_repeat 2 86 0 243 0 0 0 chr4 146060796 146060823 -38227839 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 707 253 36 52 chr4 146061387 146061636 -38227026 - MER112 DNA MER1_type -15 245 1 930 122 22 0 chr4 146061961 146062100 -38226562 - L1PA16 LINE L1 -1 6165 6024 30 27 0 0 chr4 146062464 146062501 -38226161 + AT_rich Low_complexity Low_complexity 1 37 0 651 253 40 84 chr4 146062749 146063045 -38225617 - L2 LINE L2 -4 3309 3027 740 240 70 6 chr4 146063324 146063495 -38225167 + MIR SINE MIR 3 184 -78 739 298 46 37 chr4 146063533 146063882 -38224780 + MLT1I LTR MaLR 58 409 0 211 234 0 0 chr4 146063894 146063941 -38224721 + MIR SINE MIR 203 249 -13 1803 173 56 6 chr4 146064613 146064936 -38223726 + MER7A DNA MER2_type 1 337 -9 4073 159 25 5 chr4 146065027 146065773 -38222889 + L1MA8 LINE L1 5527 6287 -4 791 218 29 0 chr4 146066089 146066259 -38222403 - FAM SINE Alu 0 175 1 517 264 80 63 chr4 146066578 146067301 -38221361 - L1ME3 LINE L1 -214 5948 5221 2856 169 2 7 chr4 146067366 146067823 -38220839 - MER70A LTR ERVL -15 457 3 285 289 36 0 chr4 146067892 146067975 -38220687 + AluY SINE Alu 95 180 -121 688 146 0 0 chr4 146067976 146068079 -38220583 + FLAM_A SINE Alu 23 125 -17 3981 190 8 32 chr4 146068082 146068618 -38220044 - L1MB7 LINE L1 -64 6120 5612 2202 95 0 3 chr4 146068618 146068902 -38219760 - AluY SINE Alu -12 299 17 3981 190 8 32 chr4 146068902 146069242 -38219420 - L1MB7 LINE L1 -572 5612 5265 330 289 0 0 chr4 146069243 146069319 -38219343 - MIR SINE MIR -112 150 75 1331 309 44 36 chr4 146069834 146070445 -38218217 + L2 LINE L2 2196 2811 -503 1050 175 16 5 chr4 146070445 146070639 -38218023 - MSTB2 LTR MaLR 0 457 262 443 170 43 21 chr4 146070678 146070772 -38217890 - MSTB2 LTR MaLR -300 96 1 649 326 103 29 chr4 146070783 146071237 -38217425 + L2 LINE L2 2820 3307 -6 221 357 87 0 chr4 146071495 146071621 -38217041 - MIR3 SINE MIR -6 202 66 36 53 0 0 chr4 146071698 146071755 -38216907 + AT_rich Low_complexity Low_complexity 1 57 0 24 53 0 0 chr4 146072208 146072246 -38216416 + AT_rich Low_complexity Low_complexity 1 38 0 2219 213 63 18 chr4 146072351 146072896 -38215766 + MLT1E2 LTR MaLR 89 626 0 350 244 41 116 chr4 146072901 146073143 -38215519 - L1ME LINE L1 -330 5791 5568 2329 88 0 0 chr4 146073191 146073487 -38215175 - AluSc SINE Alu -13 296 1 5071 177 35 13 chr4 146073708 146075147 -38213515 + L1MA7 LINE L1 4821 6291 0 2135 119 3 0 chr4 146075171 146075456 -38213206 + AluSx SINE Alu 1 286 -26 557 247 129 0 chr4 146075663 146075825 -38212837 - MER5A DNA MER1_type 0 189 4 524 228 16 0 chr4 146076195 146076322 -38212340 + L1MA10 LINE L1 6194 6322 -12 353 240 0 0 chr4 146076748 146076823 -38211839 - L1MEc LINE L1 -4344 3402 3328 4512 138 15 15 chr4 146076828 146077605 -38211057 - L1MA5 LINE L1 0 6300 5524 1112 193 21 55 chr4 146077611 146077849 -38210813 + AluJo SINE Alu 1 230 -82 747 212 73 7 chr4 146077870 146078148 -38210514 - L1M1 LINE L1 -4410 3336 2849 465 277 81 5 chr4 146078177 146078557 -38210105 - L1MEc LINE L1 -5021 2725 2201 472 240 7 84 chr4 146078587 146078741 -38209921 - L1MEc LINE L1 -6210 1536 1395 198 0 0 0 chr4 146079439 146079461 -38209201 + (GGA)n Simple_repeat Simple_repeat 3 24 0 270 0 0 0 chr4 146079607 146079637 -38209025 + (CA)n Simple_repeat Simple_repeat 2 31 0 1068 245 92 49 chr4 146079637 146080107 -38208555 + LTR33 LTR ERVL 31 520 -1 291 28 0 0 chr4 146080707 146080743 -38207919 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 649 246 0 0 chr4 146082262 146082404 -38206258 + Tigger3(Golem) DNA MER2_type 1 142 -2887 * 1202 189 48 12 chr4 146082401 146082650 -38206012 + Tigger3(Golem) DNA MER2_type 2771 3028 -1 4000 284 112 8 chr4 146082697 146084139 -38204523 - L2 LINE L2 -1631 1683 93 271 191 15 15 chr4 146084209 146084277 -38204385 + (TA)n Simple_repeat Simple_repeat 1 68 0 356 140 0 0 chr4 146084420 146084477 -38204185 - L1PA16 LINE L1 -252 5914 5858 405 288 117 0 chr4 146084558 146084721 -38203941 + L2 LINE L2 3121 3302 -11 258 311 148 57 chr4 146085389 146085598 -38203064 + MIR SINE MIR 29 256 -6 186 189 0 0 chr4 146088725 146088762 -38199900 + CT-rich Low_complexity Low_complexity 3 39 0 21 82 0 0 chr4 146088869 146088918 -38199744 + AT_rich Low_complexity Low_complexity 1 49 0 424 299 102 7 chr4 146089147 146089284 -38199378 - MIR3 SINE MIR -4 204 55 40575 38 24 4 chr4 146089361 146089688 -38198974 + L1P1 LINE L1 1 320 -5835 2837 10 0 0 chr4 146089688 146089997 -38198665 + AluYa5 SINE Alu 1 309 -2 40575 38 24 4 chr4 146089997 146095371 -38193291 + L1P1 LINE L1 320 5813 -342 421 313 106 3 chr4 146145371 146145691 -38142971 - L1M4 LINE L1 -3129 3017 2665 1252 180 23 19 chr4 146145849 146146144 -38142518 + L1PB4 LINE L1 5895 6190 0 24 32 0 0 chr4 146146310 146146341 -38142321 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr4 146147367 146147390 -38141272 + AT_rich Low_complexity Low_complexity 1 23 0 379 313 109 0 chr4 146147996 146148124 -38140538 - MIR SINE MIR -110 152 11 458 85 0 43 chr4 146148567 146148661 -38140001 + (TTCC)n Simple_repeat Simple_repeat 4 93 0 446 196 10 0 chr4 146148669 146148771 -38139891 + C-rich Low_complexity Low_complexity 5 107 0 186 43 0 0 chr4 146150204 146150227 -38138435 + (GA)n Simple_repeat Simple_repeat 2 24 0 758 139 0 8 chr4 146150228 146150350 -38138312 + FLAM_C SINE Alu 2 122 -11 203 250 17 17 chr4 146150350 146150410 -38138252 + GA-rich Low_complexity Low_complexity 5 64 0 285 362 58 22 chr4 146150603 146150827 -38137835 + L2 LINE L2 3037 3268 -4 8836 232 50 38 chr4 146152782 146155013 -38133649 + L1M2a LINE L1 1 2203 -4964 1531 212 23 7 chr4 146155013 146155320 -38133342 + AluJo SINE Alu 1 312 0 8836 232 50 38 chr4 146155320 146155993 -38132669 + L1M2a LINE L1 2203 2866 -4301 2303 82 0 3 chr4 146155993 146156284 -38132378 - AluY SINE Alu -21 290 1 8836 232 50 38 chr4 146156284 146157973 -38130689 + L1M2a LINE L1 2866 4375 -2792 10800 30 0 2 chr4 146157973 146160044 -38128618 + L1PA4 LINE L1 4069 6154 -1 8836 232 50 38 chr4 146160044 146161433 -38127229 + L1M2a LINE L1 4375 5745 -1422 882 218 29 39 chr4 146161445 146161725 -38126937 + L1MA9 LINE L1 5998 6274 -38 2280 98 10 0 chr4 146161970 146162267 -38126395 + AluY SINE Alu 1 300 -11 4481 161 13 9 chr4 146162561 146163404 -38125258 - L1PBa LINE L1 -4631 2232 1387 12988 209 25 4 chr4 146163417 146166716 -38121946 + L1 LINE L1 1610 4942 -1204 225 94 31 62 chr4 146166716 146166812 -38121850 + (TA)n Simple_repeat Simple_repeat 2 94 0 2035 120 41 41 chr4 146166849 146167216 -38121446 + L1PB1 LINE L1 5782 6148 -3 216 0 0 0 chr4 146167939 146167963 -38120699 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 25 65 0 0 chr4 146168789 146168835 -38119827 + AT_rich Low_complexity Low_complexity 1 46 0 25 31 0 0 chr4 146170523 146170555 -38118107 + AT_rich Low_complexity Low_complexity 1 32 0 568 143 0 0 chr4 146171415 146171499 -38117163 - AluS SINE Alu -228 84 1 24 32 0 0 chr4 146172492 146172523 -38116139 + AT_rich Low_complexity Low_complexity 1 31 0 357 336 0 0 chr4 146173197 146173307 -38115355 + MIR SINE MIR 33 142 -120 325 271 49 25 chr4 146173570 146173692 -38114970 - MIR SINE MIR -54 208 84 440 276 48 35 chr4 146173849 146173994 -38114668 + MIR3 SINE MIR 59 205 -3 426 320 6 34 chr4 146176068 146176246 -38112416 - MER5B DNA MER1_type 0 178 6 284 250 80 45 chr4 146176273 146176361 -38112301 - MER5A DNA MER1_type -86 103 13 491 252 118 8 chr4 146176653 146176780 -38111882 + MIR SINE MIR 14 154 -108 351 276 38 0 chr4 146176887 146176992 -38111670 + MIR SINE MIR 154 262 0 15990 208 33 22 chr4 146177250 146183142 -38105520 - L1PA15 LINE L1 -1 6815 850 324 49 0 0 chr4 146183197 146183238 -38105424 - MADE1 DNA Mariner -39 41 1 276 283 71 0 chr4 146183258 146183357 -38105305 - MIR3 SINE MIR -53 155 50 570 194 75 25 chr4 146183780 146183940 -38104722 - L2 LINE L2 -788 2526 2359 414 0 0 0 chr4 146184885 146184931 -38103731 + (TG)n Simple_repeat Simple_repeat 2 47 0 25 65 0 0 chr4 146186868 146186914 -38101748 + AT_rich Low_complexity Low_complexity 1 46 0 24 0 0 0 chr4 146186923 146186947 -38101715 + AT_rich Low_complexity Low_complexity 1 24 0 769 110 29 22 chr4 146187647 146187809 -38100853 - L1MA8 LINE L1 0 6291 6155 212 151 70 35 chr4 146188650 146188736 -38099926 + (CTATA)n Simple_repeat Simple_repeat 2 90 0 26 30 0 0 chr4 146188865 146188898 -38099764 + AT_rich Low_complexity Low_complexity 1 33 0 316 293 36 50 chr4 146188945 146189001 -38099661 + MIR3 SINE MIR 43 98 -110 2074 164 19 6 chr4 146189001 146189361 -38099301 + MLT1A1 LTR MaLR 1 365 0 316 293 36 50 chr4 146189361 146189444 -38099218 + MIR3 SINE MIR 98 180 -28 186 71 0 0 chr4 146189671 146189699 -38098963 + (TG)n Simple_repeat Simple_repeat 2 29 0 935 99 0 0 chr4 146189777 146189898 -38098764 - AluSp/q SINE Alu -15 298 178 553 324 69 24 chr4 146190059 146190306 -38098356 - L3b LINE CR1 -224 1359 1102 239 312 13 0 chr4 146190410 146190487 -38098175 - MIR SINE MIR -111 151 74 200 135 0 27 chr4 146190530 146190567 -38098095 + (TA)n Simple_repeat Simple_repeat 2 37 0 273 29 0 0 chr4 146190567 146190601 -38098061 + (CA)n Simple_repeat Simple_repeat 2 35 0 1165 168 0 36 chr4 146191413 146191633 -38097029 + AluJb SINE Alu 1 212 -100 331 219 0 0 chr4 146193686 146193759 -38094903 - L1MA10 LINE L1 -13 6321 6249 213 211 39 19 chr4 146193891 146193943 -38094719 + MER5B DNA MER1_type 20 72 -106 * 444 241 46 103 chr4 146193897 146194071 -38094591 - MER5A DNA MER1_type -25 164 1 419 239 142 13 chr4 146194239 146194394 -38094268 - MER112 DNA MER1_type -85 175 1 567 291 145 43 chr4 146194394 146194762 -38093900 + L2 LINE L2 2659 3084 -229 2419 78 3 0 chr4 146194762 146195069 -38093593 - AluY SINE Alu -3 308 1 567 291 145 43 chr4 146195069 146195137 -38093525 + L2 LINE L2 3084 3144 -169 248 248 88 128 chr4 146195144 146195394 -38093268 + LTR67 LTR ERVL 22 261 -296 14648 116 26 43 chr4 146195755 146198196 -38090466 + Tigger1 DNA MER2_type 1 2399 -19 438 81 0 54 chr4 146199410 146199484 -38089178 - L1PA10 LINE L1 -1 6167 6098 180 229 98 16 chr4 146200957 146201018 -38087644 - MIR3 SINE MIR 0 208 143 385 216 11 11 chr4 146201404 146201492 -38087170 + L1MC5 LINE L1 6738 6825 -1136 1668 241 76 45 chr4 146201842 146202455 -38086207 - L1MEc LINE L1 -4471 1925 1276 261 0 0 0 chr4 146202455 146202484 -38086178 + (TA)n Simple_repeat Simple_repeat 1 29 0 1668 241 76 45 chr4 146202484 146202743 -38085919 - L1MEc LINE L1 -5120 1276 1026 26 30 0 0 chr4 146203087 146203120 -38085542 + AT_rich Low_complexity Low_complexity 1 33 0 2331 92 10 0 chr4 146203231 146203536 -38085126 + AluY SINE Alu 1 308 -3 267 380 0 18 chr4 146203651 146203764 -38084898 - MIR3 SINE MIR -97 111 1 229 286 0 0 chr4 146205358 146205407 -38083255 - L2 LINE L2 -5 3267 3219 2266 102 0 10 chr4 146206317 146206631 -38082031 + AluY SINE Alu 1 311 0 31753 100 9 23 chr4 146208570 146215034 -38073628 + L1PA7 LINE L1 3 6466 -3 295 119 0 0 chr4 146215054 146215096 -38073566 - MER116 DNA Mariner -38 42 1 2011 121 3 3 chr4 146215208 146215490 -38073172 - AluSx SINE Alu -6 306 25 309 283 71 10 chr4 146215858 146215957 -38072705 - MIR SINE MIR -48 214 110 1993 122 0 7 chr4 146216269 146216557 -38072105 + AluSq SINE Alu 2 287 -26 369 326 70 8 chr4 146216672 146216801 -38071861 - L2 LINE L2 -17 3296 3160 684 196 42 7 chr4 146216869 146217012 -38071650 + AluJb SINE Alu 3 150 -162 2442 80 0 0 chr4 146217017 146217319 -38071343 + AluSc SINE Alu 4 305 -4 1485 325 88 17 chr4 146217360 146218195 -38070467 - L2 LINE L2 -262 3051 2150 376 333 91 0 chr4 146218244 146218376 -38070286 - L2 LINE L2 -921 2393 2250 278 254 48 0 chr4 146218861 146218924 -38069738 + L2 LINE L2 3142 3207 -65 10992 32 1 24 chr4 146219591 146221730 -38066932 + L1PA3 LINE L1 4079 6196 0 547 265 0 15 chr4 146221783 146221915 -38066747 - MIR SINE MIR -121 141 12 3124 168 28 20 chr4 146223014 146223321 -38065341 + L1MB7 LINE L1 5523 5826 -358 2200 79 45 3 chr4 146223321 146223611 -38065051 + AluY SINE Alu 1 302 -9 3124 168 28 20 chr4 146223611 146223905 -38064757 + L1MB7 LINE L1 5826 6129 -55 225 149 43 0 chr4 146223966 146224013 -38064649 + L1MB7 LINE L1 6136 6184 0 180 0 0 0 chr4 146224556 146224576 -38064086 + (T)n Simple_repeat Simple_repeat 1 20 0 1619 100 0 9 chr4 146224705 146224936 -38063726 - L1PA8A LINE L1 -28 6103 5875 2153 103 40 7 chr4 146225045 146225345 -38063317 + AluSx SINE Alu 1 310 -2 282 250 188 21 chr4 146225749 146225845 -38062817 - MIR SINE MIR -62 200 89 3985 240 62 7 chr4 146226338 146227543 -38061119 + L1M4 LINE L1 2369 3640 -2506 23 33 0 0 chr4 146227717 146227747 -38060915 + AT_rich Low_complexity Low_complexity 1 30 0 210 118 0 0 chr4 146227833 146227867 -38060795 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 341 276 113 22 chr4 146227867 146228142 -38060520 - L1M4 LINE L1 -1331 4815 4516 277 247 12 25 chr4 146228587 146228668 -38059994 + HAL1 LINE L1 1607 1686 -821 982 259 8 35 chr4 146229053 146229312 -38059350 + MIR SINE MIR 11 262 0 337 289 119 63 chr4 146229331 146229792 -38058870 - L1M4 LINE L1 -2846 3300 2814 263 290 72 21 chr4 146230126 146230319 -38058343 - L1M4 LINE L1 -3644 2502 2300 25 31 0 0 chr4 146233966 146233998 -38054664 + AT_rich Low_complexity Low_complexity 1 32 0 38 0 0 0 chr4 146234055 146234093 -38054569 + AT_rich Low_complexity Low_complexity 1 38 0 221 108 93 23 chr4 146234096 146234225 -38054437 + (TATAA)n Simple_repeat Simple_repeat 1 138 0 32 67 0 0 chr4 146234233 146234293 -38054369 + AT_rich Low_complexity Low_complexity 1 60 0 23 33 0 0 chr4 146234454 146234484 -38054178 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr4 146234778 146234814 -38053848 + AT_rich Low_complexity Low_complexity 1 36 0 477 289 113 34 chr4 146236586 146236825 -38051837 + MIR SINE MIR 2 259 -3 189 241 56 19 chr4 146237938 146237992 -38050670 - MIR3 SINE MIR -10 198 143 210 200 0 0 chr4 146238428 146238468 -38050194 - MIR SINE MIR -61 147 108 22 35 0 0 chr4 146238555 146238584 -38050078 + AT_rich Low_complexity Low_complexity 1 29 0 385 323 51 20 chr4 146238742 146239098 -38049564 + L2 LINE L2 2309 2675 -639 21 36 0 0 chr4 146239153 146239181 -38049481 + AT_rich Low_complexity Low_complexity 1 28 0 746 197 27 21 chr4 146239354 146239542 -38049120 + MER53 DNA DNA 1 189 0 1591 86 40 5 chr4 146239582 146239804 -38048858 - MER30 DNA MER1_type 0 230 1 288 280 37 53 chr4 146241123 146241312 -38047350 + L2 LINE L2 2686 2871 -443 258 268 0 52 chr4 146241504 146241601 -38047061 - MIR SINE MIR -71 191 100 23 33 0 0 chr4 146241687 146241717 -38046945 + AT_rich Low_complexity Low_complexity 1 30 0 392 288 147 11 chr4 146241798 146241975 -38046687 + L2 LINE L2 3113 3313 0 2136 106 3 7 chr4 146244010 146244325 -38044337 + AluSq SINE Alu 1 314 0 2146 135 0 0 chr4 146244673 146244970 -38043692 - AluSx SINE Alu -15 297 1 493 239 12 49 chr4 146245923 146246086 -38042576 + MER103 DNA DNA 8 164 -2 29 0 0 0 chr4 146246456 146246485 -38042177 + AT_rich Low_complexity Low_complexity 1 29 0 31 44 0 0 chr4 146247993 146248038 -38040624 + AT_rich Low_complexity Low_complexity 1 45 0 26 0 0 0 chr4 146249059 146249085 -38039577 + AT_rich Low_complexity Low_complexity 1 26 0 1119 57 25 6 chr4 146249447 146249604 -38039058 - L1PA13 LINE L1 -4 6159 6000 1051 284 126 17 chr4 146249948 146250457 -38038205 - L2 LINE L2 0 3313 2750 252 259 0 0 chr4 146250554 146250608 -38038054 + L1ME4a LINE L1 5984 6037 -84 926 150 29 6 chr4 146251046 146251219 -38037443 - L1MB2 LINE L1 -2 6169 5993 216 264 0 0 chr4 146251261 146251314 -38037348 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 491 286 50 73 chr4 146255331 146255827 -38032835 + HAL1b LINE L1 245 729 -619 22 0 0 0 chr4 146255957 146255979 -38032683 + AT_rich Low_complexity Low_complexity 1 22 0 2277 105 85 3 chr4 146256717 146257070 -38031592 + L1PA11 LINE L1 5792 6173 -1 2153 123 121 43 chr4 146257139 146257189 -38031473 - MSTA LTR MaLR 0 428 383 262 0 26 26 chr4 146257189 146257228 -38031434 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 12845 39 5 1 chr4 146257228 146259545 -38029117 - L1PA4 LINE L1 -16 6139 3817 2153 123 121 43 chr4 146259545 146259890 -38028772 - MSTA LTR MaLR -44 384 1 225 191 0 0 chr4 146261038 146261085 -38027577 + A-rich Low_complexity Low_complexity 1 47 0 351 206 55 0 chr4 146261615 146261688 -38026974 + MLT1C LTR MaLR 1 77 -390 * 874 163 0 0 chr4 146261683 146261818 -38026844 + MLT1C LTR MaLR 333 467 0 33 25 0 0 chr4 146262515 146262555 -38026107 + AT_rich Low_complexity Low_complexity 1 40 0 477 300 29 53 chr4 146262920 146263090 -38025572 + MIR3 SINE MIR 31 196 -12 252 263 150 0 chr4 146263222 146263355 -38025307 + MIR SINE MIR 104 256 -6 316 333 48 24 chr4 146264260 146264428 -38024234 - MIR3 SINE MIR -16 192 21 260 361 14 42 chr4 146264613 146264678 -38023984 - MIR SINE MIR -111 151 86 2107 137 25 0 chr4 146264678 146265037 -38023625 - L1MB1 LINE L1 -3 6165 5798 260 361 14 42 chr4 146265037 146265115 -38023547 - MIR SINE MIR -176 86 12 25 0 0 0 chr4 146265248 146265273 -38023389 + AT_rich Low_complexity Low_complexity 1 25 0 494 128 13 0 chr4 146266142 146266220 -38022442 + MADE1 DNA Mariner 1 79 -1 437 253 42 11 chr4 146266725 146266820 -38021842 + MER81 DNA DNA 17 114 0 21 71 0 0 chr4 146266956 146266998 -38021664 + AT_rich Low_complexity Low_complexity 1 42 0 245 242 91 0 chr4 146268816 146268882 -38019780 + MIR SINE MIR 71 142 -66 213 205 0 0 chr4 146268914 146268953 -38019709 + (CA)n Simple_repeat Simple_repeat 2 40 0 196 292 0 0 chr4 146268970 146269018 -38019644 + L2 LINE L2 3250 3297 -16 203 296 65 37 chr4 146273161 146273269 -38015393 - MIR3 SINE MIR -7 201 91 232 333 41 55 chr4 146273337 146273556 -38015106 + MIR SINE MIR 47 262 0 344 253 53 53 chr4 146274620 146274770 -38013892 - L1ME4a LINE L1 -38 6083 5934 2173 118 3 3 chr4 146274945 146275251 -38013411 - AluSg SINE Alu -4 306 1 482 255 134 28 chr4 146275657 146275873 -38012789 - MIR SINE MIR -14 248 10 741 128 94 0 chr4 146276294 146276411 -38012251 + FRAM SINE Alu 38 165 -11 674 303 79 0 chr4 146276438 146276679 -38011983 + MIR SINE MIR 2 261 -1 316 273 273 8 chr4 146277653 146277785 -38010877 + MER5A DNA MER1_type 8 174 -15 4558 213 53 12 chr4 146278837 146281734 -38006928 - L1MB7 LINE L1 -302 5882 2797 204 300 17 100 chr4 146281734 146281914 -38006748 + L2 LINE L2 3024 3188 -125 2203 147 50 38 chr4 146282719 146283140 -38005522 - MSTB LTR MaLR 0 426 1 2021 56 0 0 chr4 146283520 146283770 -38004892 - L1PA3 LINE L1 0 6155 5906 30 27 0 0 chr4 146284433 146284470 -38004192 + AT_rich Low_complexity Low_complexity 1 37 0 1191 156 18 4 chr4 146285987 146286212 -38002450 - L1MA9 LINE L1 0 6312 6085 1519 104 119 0 chr4 146286242 146286493 -38002169 - L1PA16 LINE L1 -9 6157 5877 514 251 111 12 chr4 146286515 146286686 -38001976 - L1ME4a LINE L1 -2001 5807 5620 450 293 24 0 chr4 146286842 146286965 -38001697 + MIR SINE MIR 65 190 -72 949 264 164 26 chr4 146286983 146287366 -38001296 + MLT1D LTR MaLR 27 462 -43 25 0 0 0 chr4 146287572 146287597 -38001065 + AT_rich Low_complexity Low_complexity 1 25 0 520 344 102 0 chr4 146287611 146287925 -38000737 - L2 LINE L2 -727 2587 2242 2161 197 60 20 chr4 146287929 146288380 -38000282 + MLT2B1 LTR ERVL 1 469 -51 249 254 14 14 chr4 146288391 146288462 -38000200 + MLT1C LTR MaLR 389 459 -8 231 132 0 0 chr4 146288489 146288527 -38000135 + MLT2C2 LTR ERVL 414 451 -13 187 270 258 0 chr4 146288538 146288697 -37999965 - L2 LINE L2 -1070 2244 2045 2361 86 0 0 chr4 146288857 146289158 -37999504 - AluY SINE Alu -10 301 1 195 42 0 0 chr4 146289723 146289747 -37998915 + (TA)n Simple_repeat Simple_repeat 1 24 0 1166 209 13 39 chr4 146291214 146291448 -37997214 + Tigger7 DNA MER2_type 2 229 -504 638 182 18 0 chr4 146291448 146291558 -37997104 + Tigger7 DNA MER2_type 2376 2487 0 23 33 0 0 chr4 146291576 146291606 -37997056 + AT_rich Low_complexity Low_complexity 1 30 0 547 308 28 43 chr4 146293121 146293332 -37995330 + MIR SINE MIR 26 233 -29 580 230 48 38 chr4 146293661 146293864 -37994798 + MIR SINE MIR 5 213 -49 23 33 0 0 chr4 146294124 146294154 -37994508 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr4 146294700 146294721 -37993941 + (CA)n Simple_repeat Simple_repeat 1 21 0 24 53 0 0 chr4 146294842 146294880 -37993782 + AT_rich Low_complexity Low_complexity 1 38 0 39 22 0 0 chr4 146295275 146295321 -37993341 + AT_rich Low_complexity Low_complexity 1 46 0 25 0 0 0 chr4 146295440 146295465 -37993197 + AT_rich Low_complexity Low_complexity 1 25 0 26 74 0 0 chr4 146295554 146295608 -37993054 + AT_rich Low_complexity Low_complexity 1 54 0 2048 129 7 10 chr4 146296549 146296851 -37991811 - AluSx SINE Alu -11 301 1 836 147 15 22 chr4 146296851 146296987 -37991675 - AluSq/x SINE Alu -178 135 1 1324 227 90 6 chr4 146297746 146298068 -37990594 - LTR16C LTR ERVL -3 488 140 272 277 246 0 chr4 146298143 146298273 -37990389 + MIR SINE MIR 95 256 -6 547 274 58 30 chr4 146298449 146298847 -37989815 + L1ME4a LINE L1 5713 6121 0 23 86 0 0 chr4 146299046 146299104 -37989558 + AT_rich Low_complexity Low_complexity 1 58 0 1128 118 0 0 chr4 146299899 146300051 -37988611 + AluSg/x SINE Alu 137 288 -24 883 302 4 8 chr4 146300606 146300851 -37987811 + MIR SINE MIR 12 255 -7 333 259 93 19 chr4 146301364 146301472 -37987190 + MIR SINE MIR 18 133 -75 604 307 19 37 chr4 146301620 146301835 -37986827 + MIR SINE MIR 22 232 -30 453 300 30 65 chr4 146301817 146302017 -37986645 - L2 LINE L2 -17 3296 3104 * 533 302 148 19 chr4 146302125 146302524 -37986138 - L2 LINE L2 -161 3152 2717 473 352 85 8 chr4 146302778 146303014 -37985648 + MIR SINE MIR 7 260 -2 239 309 0 24 chr4 146306176 146306260 -37982402 - L2 LINE L2 -56 3257 3176 240 59 0 0 chr4 146306312 146306346 -37982316 + (TG)n Simple_repeat Simple_repeat 2 35 0 796 181 0 0 chr4 146307474 146307607 -37981055 + FLAM_C SINE Alu 1 133 0 478 342 0 7 chr4 146308473 146308625 -37980037 - MIR3 SINE MIR -28 180 30 350 365 83 13 chr4 146309726 146309956 -37978706 + L3 LINE CR1 1228 1473 -104 1071 196 9 18 chr4 146309956 146310175 -37978487 - MER20 DNA MER1_type -1 218 2 354 258 47 16 chr4 146310236 146310364 -37978298 - MIR SINE MIR -56 206 75 510 269 53 53 chr4 146311399 146311607 -37977055 + L2 LINE L2 3103 3310 -3 703 180 133 7 chr4 146312474 146312581 -37976081 + L1MD2 LINE L1 6026 6159 -200 342 0 0 0 chr4 146312581 146312619 -37976043 + (CA)n Simple_repeat Simple_repeat 2 39 0 703 180 133 7 chr4 146312619 146312661 -37976001 + L1MD2 LINE L1 6159 6194 -165 991 138 53 0 chr4 146312670 146312858 -37975804 - L1MA4 LINE L1 -6 6294 6097 277 216 95 0 chr4 146312860 146312934 -37975728 - L1MA4 LINE L1 -160 6140 6060 651 239 0 13 chr4 146312953 146313112 -37975550 + L1MD2 LINE L1 6181 6337 -22 705 185 37 22 chr4 146313380 146313515 -37975147 + MER8 DNA MER2_type 103 239 0 27 0 0 0 chr4 146314303 146314330 -37974332 + AT_rich Low_complexity Low_complexity 1 27 0 2786 106 19 2 chr4 146314552 146314969 -37973693 - L1P4 LINE L1 -452 5709 5286 221 306 200 12 chr4 146315454 146315614 -37973048 - MIR SINE MIR -51 211 22 180 341 91 34 chr4 146315969 146316057 -37972605 + L2 LINE L2 3148 3240 -32 397 22 0 0 chr4 146316371 146316416 -37972246 - L1PA4 LINE L1 -80 6075 6031 477 131 50 20 chr4 146316458 146316557 -37972105 + L1MA7 LINE L1 6089 6190 -101 2031 97 38 0 chr4 146318822 146318950 -37969712 + AluSq SINE Alu 1 123 -190 198 0 0 0 chr4 146318950 146318972 -37969690 + (CA)n Simple_repeat Simple_repeat 1 22 0 2031 97 38 0 chr4 146318972 146319133 -37969529 + AluSq SINE Alu 123 301 -12 691 219 0 0 chr4 146319553 146319681 -37968981 + FLAM_A SINE Alu 1 128 -5 743 174 0 0 chr4 146320215 146320330 -37968332 + FLAM_C SINE Alu 1 115 -18 24 0 0 0 chr4 146320330 146320354 -37968308 + AT_rich Low_complexity Low_complexity 1 24 0 204 200 0 0 chr4 146320812 146320862 -37967800 + (CA)n Simple_repeat Simple_repeat 1 50 0 24 0 0 0 chr4 146323112 146323136 -37965526 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 146323355 146323376 -37965286 + AT_rich Low_complexity Low_complexity 1 21 0 243 247 157 0 chr4 146324076 146324165 -37964497 - MARNA DNA Mariner -19 567 465 1449 119 44 0 chr4 146324249 146324475 -37964187 + L1PA8A LINE L1 2 237 -5638 * 26013 131 5 8 chr4 146324474 146329187 -37959475 + L1PA8A LINE L1 1434 6128 -318 1145 118 94 0 chr4 146329473 146329643 -37959019 + AluSg/x SINE Alu 119 304 -6 666 283 45 29 chr4 146329694 146329938 -37958724 - MIR SINE MIR -6 256 9 272 215 44 96 chr4 146329950 146330085 -37958577 + MER112 DNA MER1_type 109 236 -24 205 98 49 0 chr4 146330104 146330145 -37958517 + (CATA)n Simple_repeat Simple_repeat 2 44 0 204 304 20 59 chr4 146330423 146330525 -37958137 - L2 LINE L2 -38 3275 3178 873 259 92 0 chr4 146330739 146330978 -37957684 + MIR SINE MIR 2 262 0 402 189 40 0 chr4 146331070 146331144 -37957518 - L2 LINE L2 -10 3303 3227 * 743 306 148 16 chr4 146331142 146331453 -37957209 + L2 LINE L2 2423 2774 -540 24 67 0 0 chr4 146331598 146331643 -37957019 + AT_rich Low_complexity Low_complexity 1 45 0 329 173 0 0 chr4 146332343 146332395 -37956267 - Tigger1 DNA MER2_type -2366 52 1 254 161 0 18 chr4 146332525 146332581 -37956081 + (CATA)n Simple_repeat Simple_repeat 2 56 0 233 89 0 0 chr4 146332613 146332658 -37956004 + LTR66 LTR ERVL 394 438 -172 23 54 0 0 chr4 146332852 146332889 -37955773 + AT_rich Low_complexity Low_complexity 1 37 0 753 186 0 0 chr4 146333599 146333728 -37954934 + FLAM_C SINE Alu 1 129 -14 189 386 98 18 chr4 146333992 146334155 -37954507 - MIR SINE MIR -52 210 35 180 111 0 0 chr4 146334415 146334442 -37954220 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 230 236 0 14 chr4 146334504 146334576 -37954086 + CT-rich Low_complexity Low_complexity 1 71 0 2341 84 0 7 chr4 146335313 146335610 -37953052 + AluY SINE Alu 1 295 -16 2263 315 141 8 chr4 146336525 146337784 -37950878 - L2 LINE L2 -416 2898 1472 1908 161 3 3 chr4 146341713 146342005 -37946657 + AluSx SINE Alu 3 294 -18 23 0 0 0 chr4 146342141 146342164 -37946498 + AT_rich Low_complexity Low_complexity 1 23 0 1627 249 94 80 chr4 146343011 146343552 -37945110 - MLT1G LTR MaLR -44 546 3 723 205 23 65 chr4 146343897 146344112 -37944550 - L2 LINE L2 -8 3305 3100 829 301 40 46 chr4 146344143 146344468 -37944194 - L2 LINE L2 -454 2860 2538 22 35 0 0 chr4 146344941 146344970 -37943692 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr4 146347196 146347231 -37941431 + AT_rich Low_complexity Low_complexity 1 35 0 270 143 14 29 chr4 146348869 146348939 -37939723 + GA-rich Low_complexity Low_complexity 3 71 0 328 245 252 7 chr4 146350150 146350289 -37938373 + MIR3 SINE MIR 13 185 -23 271 361 69 21 chr4 146353938 146354082 -37934580 - L2 LINE L2 0 3272 3122 227 349 31 65 chr4 146354270 146354594 -37934068 - L2 LINE L2 -412 2902 2590 189 0 0 0 chr4 146354941 146354962 -37933700 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 27 49 0 0 chr4 146358981 146359022 -37929640 + AT_rich Low_complexity Low_complexity 1 41 0 2133 131 3 0 chr4 146361368 146361666 -37926996 - AluSx SINE Alu -11 301 3 26 101 0 0 chr4 146361750 146361839 -37926823 + AT_rich Low_complexity Low_complexity 1 89 0 448 303 174 11 chr4 146361891 146362220 -37926442 + L2 LINE L2 2651 3047 -266 333 328 102 60 chr4 146362404 146362688 -37925974 + L2 LINE L2 2855 3150 -122 2234 65 0 7 chr4 146363227 146363502 -37925160 + AluY SINE Alu 38 310 -1 734 293 34 68 chr4 146363936 146364404 -37924258 - MLT1J LTR MaLR -35 476 25 556 279 57 141 chr4 146364450 146364981 -37923681 + L2 LINE L2 2826 3311 -2 292 281 31 0 chr4 146365428 146365524 -37923138 + GA-rich Low_complexity Low_complexity 1 99 0 1933 180 76 43 chr4 146367005 146367494 -37921168 + MLT1D LTR MaLR 1 505 0 566 265 172 27 chr4 146367598 146368005 -37920657 + L1ME4a LINE L1 5554 6019 -102 363 200 9 9 chr4 146368626 146368855 -37919807 + (TA)n Simple_repeat Simple_repeat 1 229 0 207 0 0 0 chr4 146369466 146369489 -37919173 + (CAA)n Simple_repeat Simple_repeat 2 24 0 263 283 0 0 chr4 146370403 146370463 -37918199 + L2 LINE L2 3213 3272 0 469 285 26 26 chr4 146370841 146370992 -37917670 - LTR67 LTR ERVL -7 550 400 233 281 37 49 chr4 146371206 146371288 -37917374 - LTR67 LTR ERVL -363 194 114 1265 173 17 139 chr4 146374766 146375182 -37913480 + MLT1A1 LTR MaLR 1 365 0 817 283 95 41 chr4 146375248 146375637 -37913025 + MLT1K LTR MaLR 179 588 0 22 0 0 0 chr4 146375763 146375785 -37912877 + AT_rich Low_complexity Low_complexity 1 22 0 315 238 139 20 chr4 146378135 146378286 -37910376 - L3 LINE CR1 -637 940 772 302 109 73 0 chr4 146378957 146379012 -37909650 - MLT1K LTR MaLR -18 570 512 304 288 42 17 chr4 146379217 146379335 -37909327 + L2 LINE L2 3193 3313 0 723 248 74 12 chr4 146379661 146379903 -37908759 - HAL1 LINE L1 -784 1723 1467 743 279 71 46 chr4 146379922 146380248 -37908414 - MLT1I LTR MaLR -29 380 47 548 307 84 75 chr4 146380352 146380745 -37907917 - HAL1 LINE L1 -1158 1349 950 3398 89 20 12 chr4 146380745 146381252 -37907410 - L1MA3 LINE L1 0 6305 5795 548 307 84 75 chr4 146381252 146381311 -37907351 - HAL1 LINE L1 -1557 950 893 719 330 135 44 chr4 146382457 146383087 -37905575 + ERVL LTR ERVL 1562 2248 -3516 233 118 20 0 chr4 146384129 146384180 -37904482 + T-rich Low_complexity Low_complexity 4 55 0 260 325 32 16 chr4 146384395 146384521 -37904141 + LTR67 LTR ERVL 430 557 0 391 223 123 8 chr4 146385172 146385302 -37903360 - Charlie2 DNA MER1_type -2645 217 73 2069 132 0 3 chr4 146385309 146385619 -37903043 + AluSc SINE Alu 1 309 0 224 286 174 10 chr4 146386484 146386582 -37902080 - L2 LINE L2 -41 3231 3118 1463 178 26 88 chr4 146387990 146388377 -37900285 - MLT1A1 LTR MaLR -2 363 1 691 338 106 9 chr4 146388523 146388946 -37899716 + LTR16B LTR ERVL 1 464 0 922 309 55 22 chr4 146389087 146389504 -37899158 + ERVL LTR ERVL 4054 4484 -1280 648 350 120 4 chr4 146389559 146390010 -37898652 + ERVL LTR ERVL 4568 5070 -694 957 283 78 52 chr4 146390492 146391033 -37897629 + LTR67 LTR ERVL 2 556 -1 335 326 21 0 chr4 146391243 146391338 -37897324 - MIR SINE MIR -164 98 2 317 346 37 25 chr4 146394045 146394207 -37894455 - L2 LINE L2 -245 3068 2905 774 245 71 40 chr4 146394222 146394673 -37893989 + MLT1E LTR MaLR 28 586 -7 230 298 184 0 chr4 146394692 146394806 -37893856 - L2 LINE L2 -419 2895 2761 471 345 132 14 chr4 146394807 146395224 -37893438 - L2 LINE L2 -682 2632 2167 25 0 0 0 chr4 146395350 146395375 -37893287 + AT_rich Low_complexity Low_complexity 1 25 0 1834 207 14 6 chr4 146395684 146396046 -37892616 - MLT1A1 LTR MaLR 0 365 1 35 0 0 0 chr4 146396799 146396834 -37891828 + AT_rich Low_complexity Low_complexity 1 35 0 2416 119 6 3 chr4 146397879 146398233 -37890429 + THE1A LTR MaLR 1 355 0 11729 94 9 2 chr4 146398233 146399802 -37888860 + THE1A-int LTR MaLR 1 1580 0 2294 103 8 46 chr4 146399802 146400171 -37888491 + THE1A LTR MaLR 1 355 0 192 200 0 0 chr4 146400896 146400941 -37887721 + (CA)n Simple_repeat Simple_repeat 1 45 0 367 333 52 22 chr4 146401782 146401917 -37886745 + MER91A DNA MER1_type 36 174 -22 22 0 0 0 chr4 146402802 146402824 -37885838 + AT_rich Low_complexity Low_complexity 1 22 0 868 117 3 2 chr4 146402901 146403040 -37885622 + MLT2D LTR ERVL 1 122 -292 786 148 3 29 chr4 146403124 146403535 -37885127 + (TA)n Simple_repeat Simple_repeat 1 400 0 3272 168 21 6 chr4 146403598 146404224 -37884438 - L1MA5 LINE L1 0 6300 5666 2876 211 96 21 chr4 146404314 146405072 -37883590 - MER21B LTR ERV1 -30 833 19 388 214 0 22 chr4 146405106 146405195 -37883467 - MER21B LTR ERV1 -776 87 1 183 80 0 0 chr4 146405199 146405224 -37883438 + (CA)n Simple_repeat Simple_repeat 1 25 0 2192 105 7 3 chr4 146405949 146406244 -37882418 + AluSx SINE Alu 1 296 -16 3449 152 21 23 chr4 146406289 146406909 -37881753 + LTR31 LTR ERV1 1 619 0 213 231 39 39 chr4 146408143 146408195 -37880467 - L2 LINE L2 -32 3240 3189 352 300 64 14 chr4 146409508 146409648 -37879014 - MIR SINE MIR -14 248 102 228 287 74 74 chr4 146410771 146410893 -37877769 - MIR3 SINE MIR -32 176 55 341 320 0 31 chr4 146411061 146411189 -37877473 + MIR3 SINE MIR 85 208 0 190 309 60 24 chr4 146412527 146412611 -37876051 + L2 LINE L2 367 453 -2861 2333 110 0 0 chr4 146414185 146414493 -37874169 - AluY SINE Alu -3 308 1 207 204 0 20 chr4 146414699 146414748 -37873914 + GA-rich Low_complexity Low_complexity 4 51 0 350 247 0 0 chr4 146415188 146415261 -37873401 + MIR SINE MIR 81 153 -109 560 283 59 24 chr4 146416427 146416844 -37871818 - LTR16B LTR ERVL -15 449 1 976 319 86 29 chr4 146416861 146418510 -37870152 - ERVL LTR ERVL -17 5122 3375 671 245 92 48 chr4 146418795 146419313 -37869349 + L1MEc LINE L1 520 981 -5089 180 0 0 0 chr4 146419313 146419333 -37869329 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 671 245 92 48 chr4 146419333 146419448 -37869214 + L1MEc LINE L1 981 1089 -4981 2230 111 3 22 chr4 146419450 146419766 -37868896 + AluSg SINE Alu 1 310 0 883 283 30 4 chr4 146419778 146420097 -37868565 + L1M2 LINE L1 1565 1967 -4249 396 97 0 0 chr4 146420117 146420179 -37868483 + L1PA16 LINE L1 6101 6162 -4 8846 231 54 19 chr4 146420185 146423985 -37864677 - L1PA13 LINE L1 -2853 3944 1 249 286 0 39 chr4 146423975 146424129 -37864533 + L1M2 LINE L1 2308 2455 -3760 * 700 201 22 0 chr4 146424140 146424279 -37864383 - Tigger3(Golem) DNA MER2_type -1 3028 2887 316 230 14 0 chr4 146424365 146424439 -37864223 + MER2 DNA MER2_type 271 345 0 24 0 0 0 chr4 146424892 146424916 -37863746 + AT_rich Low_complexity Low_complexity 1 24 0 826 251 6 0 chr4 146425411 146425582 -37863080 - MER5B DNA MER1_type -6 172 1 4773 117 12 35 chr4 146426271 146427031 -37861631 + L1PA16 LINE L1 5358 6099 -67 2182 122 42 31 chr4 146427031 146427391 -37861271 + THE1B LTR MaLR 1 364 0 4773 117 12 35 chr4 146427391 146427457 -37861205 + L1PA16 LINE L1 6099 6165 -1 245 300 149 39 chr4 146427837 146428004 -37860658 + MIR3 SINE MIR 10 188 -69 482 250 103 6 chr4 146428897 146429053 -37859609 - MIR SINE MIR 0 262 92 999 219 33 14 chr4 146429288 146429503 -37859159 + MER20 DNA MER1_type 1 219 0 1772 168 16 13 chr4 146429581 146429890 -37858772 - AluJo SINE Alu -2 310 1 207 269 0 0 chr4 146429903 146429955 -37858707 - L2 LINE L2 -1 3271 3220 193 339 0 0 chr4 146430113 146430175 -37858487 + L2 LINE L2 2980 3041 -231 271 278 28 0 chr4 146430546 146430618 -37858044 - L2 LINE L2 -8 3305 3232 2818 7 0 0 chr4 146430653 146430958 -37857704 - AluYa5 SINE Alu -6 305 1 1758 130 65 49 chr4 146432559 146432928 -37855734 - THE1C LTR MaLR 0 375 1 25 0 0 0 chr4 146433320 146433345 -37855317 + AT_rich Low_complexity Low_complexity 1 25 0 429 239 111 8 chr4 146434211 146434328 -37854334 + MIR SINE MIR 126 254 -8 2194 111 0 3 chr4 146434912 146435218 -37853444 + AluSx SINE Alu 1 305 -7 2169 108 3 7 chr4 146436088 146436409 -37852253 - AluSq SINE Alu 0 313 1 247 254 28 14 chr4 146436615 146436686 -37851976 - L2 LINE L2 -1 3271 3200 1180 311 50 30 chr4 146436776 146437415 -37851247 - L2 LINE L2 -99 3214 2551 291 279 0 0 chr4 146439377 146439438 -37849224 + L3 LINE CR1 1516 1576 -1 309 202 167 71 chr4 146439973 146440141 -37848521 + MIR SINE MIR 32 215 -47 1724 164 11 4 chr4 146440464 146440772 -37847890 + AluSx SINE Alu 1 310 0 918 157 0 2 chr4 146441276 146441459 -37847203 + FRAM SINE Alu 1 164 -12 25 31 0 0 chr4 146442033 146442065 -37846597 + AT_rich Low_complexity Low_complexity 1 32 0 193 224 98 70 chr4 146442801 146442944 -37845718 - MIR SINE MIR -36 226 80 741 129 1 7 chr4 146444815 146444947 -37843715 - L1MD3 LINE L1 0 7984 6233 400 139 105 0 chr4 146444949 146445035 -37843627 + MER53 DNA DNA 1 95 -94 746 200 70 25 chr4 146445055 146445255 -37843407 - L1MC3 LINE L1 -120 7665 7457 30 59 0 0 chr4 146445331 146445382 -37843280 + AT_rich Low_complexity Low_complexity 1 51 0 31 26 0 0 chr4 146447456 146447494 -37841168 + AT_rich Low_complexity Low_complexity 1 38 0 428 243 88 27 chr4 146448180 146448328 -37840334 + MIR SINE MIR 89 245 -17 194 296 0 93 chr4 146449282 146449343 -37839319 + MIR SINE MIR 165 213 -49 1857 168 3 0 chr4 146449343 146449634 -37839028 - AluSx SINE Alu -20 292 1 194 296 0 93 chr4 146449634 146449680 -37838982 + MIR SINE MIR 213 262 0 180 299 103 0 chr4 146450545 146450652 -37838010 - MIR SINE MIR -2 260 143 * 838 305 86 13 chr4 146450651 146451025 -37837637 + L2 LINE L2 2912 3312 -1 375 331 37 0 chr4 146451029 146451165 -37837497 - MIR SINE MIR -120 142 2 1285 180 95 32 chr4 146452238 146452521 -37836141 - AluJb SINE Alu -9 303 3 200 186 47 0 chr4 146452596 146452639 -37836023 - L2 LINE L2 -1 3312 3268 6060 161 25 9 chr4 146452809 146454672 -37833990 - L1PA13 LINE L1 -1 6162 4218 225 197 49 0 chr4 146456782 146456843 -37831819 + (TA)n Simple_repeat Simple_repeat 2 65 0 419 284 30 47 chr4 146456879 146457048 -37831614 - MIR SINE MIR -57 205 40 638 236 124 11 chr4 146457147 146457325 -37831337 + MIR SINE MIR 65 262 0 656 214 32 19 chr4 146457342 146457496 -37831166 + L2 LINE L2 3158 3313 0 474 357 118 52 chr4 146459047 146459726 -37828936 + L2 LINE L2 2555 3272 0 202 267 233 0 chr4 146461397 146461483 -37827179 - MIR SINE MIR -56 206 101 274 407 0 0 chr4 146461750 146461858 -37826804 - L2 LINE L2 -4 3268 3161 15332 55 13 1 chr4 146512720 146514721 -37773941 + L1P LINE L1 2979 5002 -1144 266 0 0 0 chr4 146514722 146514751 -37773911 + L1P LINE L1 4937 4965 -1181 504 0 0 0 chr4 146515649 146515705 -37772957 + (TA)n Simple_repeat Simple_repeat 2 57 0 474 282 0 0 chr4 146515912 146516022 -37772640 + MER81 DNA DNA 1 110 -4 449 306 21 0 chr4 146516244 146516388 -37772274 - MIR SINE MIR 0 262 116 551 176 40 74 chr4 146517054 146517230 -37771432 + L1ME4a LINE L1 5951 6120 -1 22 35 0 0 chr4 146518363 146518392 -37770270 + AT_rich Low_complexity Low_complexity 1 29 0 320 214 0 0 chr4 146519016 146519072 -37769590 - MER2 DNA MER2_type 0 345 290 2851 125 4 26 chr4 146519130 146519586 -37769076 - Tigger2 DNA MER2_type 0 2718 2273 503 125 0 0 chr4 146519573 146519645 -37769017 - Tigger2 DNA MER2_type -2646 72 1 * 235 215 65 75 chr4 146520354 146520447 -37768215 + L1MC4 LINE L1 6614 6705 -1337 273 29 0 0 chr4 146520448 146520482 -37768180 + (TG)n Simple_repeat Simple_repeat 1 34 0 735 294 29 17 chr4 146521809 146522047 -37766615 + MIR SINE MIR 20 260 -2 239 237 9 53 chr4 146522050 146522164 -37766498 + (TTA)n Simple_repeat Simple_repeat 3 111 0 659 272 19 44 chr4 146523104 146523370 -37765292 - L1M1 LINE L1 -297 5824 5594 242 246 29 43 chr4 146524720 146524789 -37763873 + L2 LINE L2 3188 3255 -17 760 166 41 12 chr4 146525302 146525471 -37763191 + MER33 DNA MER1_type 52 225 -99 266 237 227 0 chr4 146525517 146525614 -37763048 - Charlie4 DNA MER1_type -11 1950 1832 1360 210 85 17 chr4 146525813 146526165 -37762497 - MER31A LTR ERV1 0 485 110 1496 151 4 12 chr4 146526165 146526410 -37762252 - THE1B LTR MaLR 0 364 122 26 0 0 0 chr4 146526997 146527023 -37761639 + AT_rich Low_complexity Low_complexity 1 26 0 186 273 23 0 chr4 146527179 146527223 -37761439 - L2 LINE L2 -9 3263 3219 2061 112 3 3 chr4 146528030 146528317 -37760345 - AluSx SINE Alu -25 287 1 684 257 69 6 chr4 146529767 146529942 -37758720 + MER5A DNA MER1_type 1 186 -3 243 0 0 0 chr4 146530321 146530348 -37758314 + (TG)n Simple_repeat Simple_repeat 2 28 0 259 239 15 15 chr4 146530614 146530681 -37757981 + (TA)n Simple_repeat Simple_repeat 1 67 0 1022 217 0 28 chr4 146530683 146530932 -37757730 - L1MB8 LINE L1 -9 6169 5928 5983 215 101 43 chr4 146530934 146534110 -37754552 - L1MDa LINE L1 -2273 4267 846 396 275 163 17 chr4 146534106 146534284 -37754378 - L1MDa LINE L1 -5941 599 396 * 551 266 0 29 chr4 146534886 146535025 -37753637 + MIR3 SINE MIR 22 156 -52 1051 266 35 22 chr4 146535030 146535342 -37753320 - MER102b DNA MER1_type -1 340 25 205 243 0 0 chr4 146535381 146535418 -37753244 + MIR3 SINE MIR 151 187 -21 546 293 146 32 chr4 146535544 146536128 -37752534 + L2 LINE L2 1850 2499 -815 323 350 8 17 chr4 146536447 146536564 -37752098 + L2 LINE L2 2955 3070 -202 866 277 62 40 chr4 146536614 146537116 -37751546 - L1M4 LINE L1 -1067 5079 4567 1509 241 107 36 chr4 146537183 146537989 -37750673 - L1M4 LINE L1 -3035 3111 2249 266 298 16 16 chr4 146539596 146539717 -37748945 - MER103 DNA DNA 0 166 46 381 318 74 37 chr4 146539817 146540116 -37748546 - L1M4 LINE L1 -1338 4808 4499 459 341 139 18 chr4 146540331 146540833 -37747829 - L1M4 LINE L1 -1896 4250 3688 2415 54 0 17 chr4 146541004 146541301 -37747361 + AluY SINE Alu 1 292 -19 1191 112 0 0 chr4 146541301 146541480 -37747182 + (TA)n Simple_repeat Simple_repeat 2 180 0 360 320 19 13 chr4 146541696 146541852 -37746810 + MER103 DNA DNA 10 166 0 538 299 140 5 chr4 146543275 146543496 -37745166 + MIR SINE MIR 9 259 -3 26 64 0 0 chr4 146543540 146543587 -37745075 + AT_rich Low_complexity Low_complexity 1 47 0 2306 67 0 3 chr4 146543587 146543872 -37744790 + AluY SINE Alu 1 284 -27 252 0 0 0 chr4 146543872 146543900 -37744762 + (TA)n Simple_repeat Simple_repeat 2 29 0 32 0 0 0 chr4 146544479 146544511 -37744151 + AT_rich Low_complexity Low_complexity 1 32 0 210 162 0 0 chr4 146545508 146545545 -37743117 + A-rich Low_complexity Low_complexity 1 37 0 338 361 26 26 chr4 146545776 146545970 -37742692 + L1ME LINE L1 5582 5775 -346 216 246 82 0 chr4 146546833 146546894 -37741768 + MER5A DNA MER1_type 36 101 -88 627 235 0 0 chr4 146547325 146547440 -37741222 - L2 LINE L2 0 3313 3199 192 333 15 0 chr4 146547664 146547730 -37740932 - L2 LINE L2 0 3313 3247 3692 132 30 5 chr4 146548381 146548971 -37739691 + MER6A DNA MER2_type 1 605 0 694 255 0 0 chr4 146548975 146549116 -37739546 + MER82 DNA MER2_type 1 141 -512 1878 104 4 19 chr4 146549794 146550118 -37738544 - AluSp SINE Alu 0 340 21 22 0 0 0 chr4 146550131 146550153 -37738509 + AT_rich Low_complexity Low_complexity 1 22 0 2271 100 7 3 chr4 146550671 146550980 -37737682 + AluY SINE Alu 1 310 -1 251 324 14 0 chr4 146551623 146551694 -37736968 - L2 LINE L2 0 3313 3242 13474 130 36 67 chr4 146551875 146552997 -37735665 + Tigger1 DNA MER2_type 1 1156 -1262 2144 143 34 63 chr4 146552997 146553439 -37735223 - MSTB1 LTR MaLR 0 432 4 13474 130 36 67 chr4 146553439 146553513 -37735149 + Tigger1 DNA MER2_type 1156 1231 -1187 1585 82 0 0 chr4 146553513 146553709 -37734953 + AluY SINE Alu 99 294 -17 5465 35 11 3 chr4 146553710 146554372 -37734290 + L1PA7 LINE L1 5480 6146 -8 13474 130 36 67 chr4 146554372 146554422 -37734240 + Tigger1 DNA MER2_type 1231 1281 -1137 366 23 0 0 chr4 146554422 146554465 -37734197 + (CA)n Simple_repeat Simple_repeat 2 44 0 13474 130 36 67 chr4 146554465 146555605 -37733057 + Tigger1 DNA MER2_type 1281 2314 -104 2402 107 0 0 chr4 146555605 146555915 -37732747 - AluSx SINE Alu -2 310 1 13474 130 36 67 chr4 146555915 146556017 -37732645 + Tigger1 DNA MER2_type 2314 2418 0 24 32 0 0 chr4 146556334 146556365 -37732297 + AT_rich Low_complexity Low_complexity 1 31 0 395 337 51 67 chr4 146556403 146557032 -37731630 - L2 LINE L2 -3 3269 2655 457 343 102 34 chr4 146557089 146557817 -37730845 - L2 LINE L2 -1571 1743 967 3294 226 174 41 chr4 146557979 146559080 -37729582 - L1MC4 LINE L1 -287 7755 6493 2163 114 0 10 chr4 146559080 146559386 -37729276 - AluSg SINE Alu -7 303 1 3294 226 174 41 chr4 146559386 146559437 -37729225 - L1MC4 LINE L1 -1549 6493 6450 902 185 34 58 chr4 146562015 146562357 -37726305 + MER31B LTR ERV1 19 464 -2 2124 237 54 31 chr4 146562359 146563010 -37725652 - HsTC2c DNA Tc2 -55 674 9 535 336 60 41 chr4 146563219 146563487 -37725175 - Charlie8 DNA MER1_type -2144 273 1 202 255 0 39 chr4 146564429 146564480 -37724182 + MIR3 SINE MIR 151 199 -9 822 191 13 0 chr4 146565097 146565249 -37723413 - MLT1B LTR MaLR -46 344 191 26 30 0 0 chr4 146565780 146565813 -37722849 + AT_rich Low_complexity Low_complexity 1 33 0 255 245 85 38 chr4 146566793 146566899 -37721763 + MLT1J LTR MaLR 226 336 -175 325 273 61 55 chr4 146567145 146567310 -37721352 - MER103 DNA DNA 0 166 1 561 303 56 8 chr4 146568647 146568881 -37719781 + L2 LINE L2 2445 2689 -625 514 336 138 21 chr4 146568976 146569360 -37719302 + L2 LINE L2 2885 3313 0 461 248 23 15 chr4 146571136 146571269 -37717393 - MER94 DNA DNA 0 134 1 1541 184 39 0 chr4 146571423 146571706 -37716956 + L1MB3 LINE L1 5684 5977 -194 2197 31 0 0 chr4 146571707 146571966 -37716696 + L1PA4 LINE L1 5889 6147 -8 1060 188 0 9 chr4 146571980 146572204 -37716458 + L1MB3 LINE L1 5959 6180 -3 195 100 0 0 chr4 146573363 146573393 -37715269 + (A)n Simple_repeat Simple_repeat 1 30 0 1992 75 58 14 chr4 146573394 146573687 -37714975 + L1PA8 LINE L1 5867 6172 0 304 150 0 0 chr4 146573704 146573764 -37714898 + L1MA4 LINE L1 6241 6300 0 864 202 45 5 chr4 146575117 146575383 -37713279 - MLT1A1 LTR MaLR -42 323 1 381 282 56 49 chr4 146575707 146576012 -37712650 - L1ME4a LINE L1 -9 6112 5806 312 319 72 12 chr4 146576026 146576192 -37712470 - L1ME4a LINE L1 -206 5915 5740 220 133 22 0 chr4 146577274 146577319 -37711343 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 647 184 103 0 chr4 146577548 146577684 -37710978 + MLT1B LTR MaLR 239 388 -2 295 265 15 15 chr4 146577982 146578114 -37710548 + L1ME4a LINE L1 5806 5937 -184 24 32 0 0 chr4 146578198 146578229 -37710433 + AT_rich Low_complexity Low_complexity 1 31 0 1305 182 126 11 chr4 146578404 146578673 -37709989 + AluJo SINE Alu 1 300 -2 387 347 16 16 chr4 146579123 146579313 -37709349 + L1M4 LINE L1 2970 3159 -2987 1684 206 39 59 chr4 146580063 146580572 -37708090 + MLT1D LTR MaLR 3 501 -4 440 344 105 44 chr4 146581423 146581851 -37706811 + HAL1b LINE L1 70 523 -825 1548 168 11 102 chr4 146582067 146582448 -37706214 + MER7A DNA MER2_type 1 344 -2 353 234 139 19 chr4 146583545 146583705 -37704957 + L1ME LINE L1 5296 5477 -644 2899 271 131 19 chr4 146584477 146585673 -37702989 + L2 LINE L2 1542 2871 -443 220 296 6 123 chr4 146585835 146585997 -37702665 - MIR3 SINE MIR -63 145 3 26076 106 10 44 chr4 146586192 146592604 -37696058 + L1PA7 LINE L1 13 6144 -10 2523 40 0 10 chr4 146593572 146593868 -37694794 - AluY SINE Alu -18 293 1 348 161 32 0 chr4 146595078 146595140 -37693522 + MIR SINE MIR 120 183 -79 191 305 207 12 chr4 146595299 146595463 -37693199 - L2 LINE L2 -37 3276 3081 295 313 118 41 chr4 146595532 146595896 -37692766 - L2 LINE L2 -353 2961 2570 226 214 0 0 chr4 146596101 146596143 -37692519 + GA-rich Low_complexity Low_complexity 4 45 0 2269 99 3 19 chr4 146598230 146598543 -37690119 + AluSg SINE Alu 1 308 -2 281 401 82 0 chr4 146601616 146601763 -37686899 - L2 LINE L2 -4 3268 3110 310 179 15 15 chr4 146602059 146602126 -37686536 - MIR SINE MIR -109 153 87 224 93 0 93 chr4 146602221 146602275 -37686387 + (CA)n Simple_repeat Simple_repeat 2 50 0 2552 60 0 0 chr4 146603889 146604191 -37684471 - AluY SINE Alu -4 307 6 229 257 57 0 chr4 146604363 146604433 -37684229 + MIR SINE MIR 130 203 -59 181 276 86 17 chr4 146605330 146605388 -37683274 - L2 LINE L2 -44 3228 3167 250 294 22 22 chr4 146607037 146607129 -37681533 - L2 LINE L2 -8 3264 3173 1113 162 19 29 chr4 146607145 146607355 -37681307 + MER20 DNA MER1_type 12 219 0 560 313 40 18 chr4 146607857 146608084 -37680578 - MIR SINE MIR -13 249 18 431 55 0 0 chr4 146608341 146608396 -37680266 + Alu SINE Alu 1 55 -255 2133 226 33 74 chr4 146608515 146609180 -37679482 - MER21B LTR ERV1 -225 638 1 1842 133 57 21 chr4 146609965 146610296 -37678366 - MER61A LTR ERV1 0 343 1 2413 183 24 17 chr4 146610485 146610949 -37677713 - MLT1C LTR MaLR 0 467 1 205 248 48 105 chr4 146611156 146611261 -37677401 + MER91C DNA MER1_type 33 131 -9 233 140 18 35 chr4 146611459 146611516 -37677146 + (TAAA)n Simple_repeat Simple_repeat 4 59 0 308 338 138 13 chr4 146612117 146612348 -37676314 - MLT1L LTR MaLR -5 610 351 269 292 56 0 chr4 146612352 146612424 -37676238 - L2 LINE L2 0 3313 3238 713 304 102 24 chr4 146612493 146612648 -37676014 - L2 LINE L2 -83 3230 3089 2004 160 0 3 chr4 146612648 146612961 -37675701 - AluJb SINE Alu 0 312 1 713 304 102 24 chr4 146612961 146613313 -37675349 - L2 LINE L2 -224 3089 2690 350 319 101 0 chr4 146613365 146613503 -37675159 + L2 LINE L2 2532 2683 -631 2016 166 81 13 chr4 146613556 146614003 -37674659 + LTR22 LTR ERVK 1 477 -32 21 57 0 0 chr4 146614471 146614506 -37674156 + AT_rich Low_complexity Low_complexity 1 35 0 1015 199 0 0 chr4 146617202 146617378 -37671284 + AluJb SINE Alu 137 312 0 352 246 93 14 chr4 146617493 146617649 -37671013 + MLT1H LTR MaLR 379 549 0 772 124 16 0 chr4 146618230 146618359 -37670303 - L1PB1 LINE L1 -2 6149 6019 26 30 0 0 chr4 146618359 146618392 -37670270 + AT_rich Low_complexity Low_complexity 1 33 0 233 259 19 0 chr4 146618988 146619042 -37669620 + (CATATA)n Simple_repeat Simple_repeat 2 56 0 342 277 0 33 chr4 146619042 146619226 -37669436 + (CATA)n Simple_repeat Simple_repeat 1 178 0 336 354 0 0 chr4 146619230 146619326 -37669336 + (CA)n Simple_repeat Simple_repeat 1 96 0 597 261 0 0 chr4 146619326 146619506 -37669156 + (TA)n Simple_repeat Simple_repeat 1 180 0 243 250 0 0 chr4 146619534 146619602 -37669060 + (TA)n Simple_repeat Simple_repeat 1 68 0 242 194 14 0 chr4 146619601 146619673 -37668989 + GA-rich Low_complexity Low_complexity 2 74 0 * 377 233 17 35 chr4 146620192 146620308 -37668354 + MER5B DNA MER1_type 26 139 -39 6003 102 4 9 chr4 146620787 146621924 -37666738 + L1PB1 LINE L1 5009 6151 0 23 0 0 0 chr4 146621927 146621950 -37666712 + AT_rich Low_complexity Low_complexity 1 23 0 445 208 99 0 chr4 146623397 146623498 -37665164 - MIR SINE MIR -26 236 126 260 246 18 0 chr4 146623648 146623705 -37664957 - L2 LINE L2 -6 3307 3250 2359 116 0 0 chr4 146623910 146624212 -37664450 - AluSq SINE Alu -11 302 1 848 191 0 45 chr4 146624604 146624782 -37663880 + FRAM SINE Alu 1 167 -9 2341 115 0 0 chr4 146625769 146626140 -37662522 + AluSx SINE Alu 1 371 0 427 253 50 44 chr4 146626434 146626616 -37662046 - L1ME4a LINE L1 -6 6115 5933 8981 159 3 2 chr4 146629053 146631543 -37657119 + L1PA13 LINE L1 3667 6163 0 703 255 110 78 chr4 146631647 146632365 -37656297 + MER20B DNA MER1_type 1 746 -37 1431 146 56 7 chr4 146632365 146632653 -37656009 + L1MA8 LINE L1 5985 6286 -5 703 255 110 78 chr4 146632653 146632690 -37655972 + MER20B DNA MER1_type 746 780 -3 297 327 142 33 chr4 146632741 146632952 -37655710 - MIR SINE MIR -16 246 13 253 122 20 0 chr4 146633549 146633598 -37655064 - MADE1 DNA Mariner 0 80 31 2118 131 10 0 chr4 146633598 146633896 -37654766 + AluSq SINE Alu 1 301 -12 201 175 0 0 chr4 146633896 146633936 -37654726 + GA-rich Low_complexity Low_complexity 1 40 0 230 116 0 0 chr4 146633936 146633979 -37654683 - MADE1 DNA Mariner -37 43 1 299 203 70 62 chr4 146633991 146634119 -37654543 - MIR SINE MIR -89 173 45 2141 143 0 0 chr4 146634971 146635278 -37653384 + AluSq SINE Alu 1 307 -6 18814 114 10 19 chr4 146635453 146638393 -37650269 + L1P LINE L1 11 2924 -3222 2371 100 3 0 chr4 146638393 146638702 -37649960 + AluY SINE Alu 1 310 -1 18814 114 10 19 chr4 146638702 146638790 -37649872 + L1P LINE L1 2924 3011 -3135 7112 40 12 13 chr4 146638790 146639356 -37649306 + L1PA6 LINE L1 4925 5490 -664 2343 93 0 3 chr4 146639356 146639656 -37649006 + AluY SINE Alu 1 299 -12 7112 40 12 13 chr4 146639656 146640320 -37648342 + L1PA6 LINE L1 5490 6154 0 316 289 69 35 chr4 146640398 146640571 -37648091 - MIR SINE MIR -64 198 20 29 28 0 0 chr4 146641675 146641711 -37646951 + AT_rich Low_complexity Low_complexity 1 36 0 848 223 65 40 chr4 146643901 146644148 -37644514 - L1MDa LINE L1 -6245 295 43 6302 164 47 13 chr4 146644182 146646416 -37642246 - L1MA8 LINE L1 -2 6289 3999 3562 134 31 3 chr4 146646734 146647316 -37641346 + L1MA7 LINE L1 5457 6054 -237 760 159 7 43 chr4 146648314 146648452 -37640210 + FLAM_C SINE Alu 1 133 0 198 103 0 0 chr4 146649862 146649891 -37638771 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 198 231 0 0 chr4 146649895 146649934 -37638728 - MIR SINE MIR -11 251 213 * 1754 268 97 48 chr4 146649931 146650949 -37637713 + L2 LINE L2 2245 3313 0 188 362 0 0 chr4 146650949 146650996 -37637666 - L2 LINE L2 -75 3197 3151 311 301 4 46 chr4 146651385 146651512 -37637150 + MIR SINE MIR 30 150 -77 2045 139 10 0 chr4 146652143 146652437 -37636225 - AluSx SINE Alu -15 297 1 1786 206 44 16 chr4 146653111 146653607 -37635055 + MER69 DNA AcHobo 2010 2519 -7 357 299 75 8 chr4 146654369 146654503 -37634159 + MIR SINE MIR 46 188 -74 220 277 72 36 chr4 146657915 146657998 -37630664 - MER91C DNA MER1_type -33 107 22 2501 73 0 10 chr4 146658065 146658379 -37630283 - AluY SINE Alu 0 311 1 300 331 54 8 chr4 146659008 146659138 -37629524 - MIR SINE MIR -28 234 99 23 68 0 0 chr4 146659187 146659231 -37629431 + AT_rich Low_complexity Low_complexity 1 44 0 26 74 0 0 chr4 146660742 146660796 -37627866 + AT_rich Low_complexity Low_complexity 1 54 0 25 0 0 0 chr4 146661498 146661523 -37627139 + AT_rich Low_complexity Low_complexity 1 25 0 310 353 43 22 chr4 146661944 146662128 -37626534 + MLT1J2 LTR MaLR 9 196 -254 317 238 12 12 chr4 146662190 146662274 -37626388 + MLT1I LTR MaLR 325 408 -1 1324 254 89 17 chr4 146663004 146663591 -37625071 - L1MCa LINE L1 -4109 3013 2385 25 31 0 0 chr4 146663591 146663623 -37625039 + AT_rich Low_complexity Low_complexity 1 32 0 14472 174 16 3 chr4 146663668 146664211 -37624451 - L1PA14 LINE L1 -4 6157 5623 2054 136 0 16 chr4 146664211 146664521 -37624141 - AluSx SINE Alu -7 305 1 14472 174 16 3 chr4 146664521 146667483 -37621179 - L1PA14 LINE L1 -538 5623 2487 1323 250 173 52 chr4 146667478 146667865 -37620797 - L1MCa LINE L1 -5626 797 458 * 2012 169 19 11 chr4 146667865 146668225 -37620437 + MLT1A1 LTR MaLR 1 363 -2 1323 250 173 52 chr4 146668225 146668551 -37620111 - L1MCa LINE L1 -5965 458 13 1521 201 21 21 chr4 146669598 146669887 -37618775 + AluJo SINE Alu 1 289 -23 21 107 0 0 chr4 146670535 146670619 -37618043 + AT_rich Low_complexity Low_complexity 1 84 0 38 89 0 0 chr4 146670638 146670739 -37617923 + AT_rich Low_complexity Low_complexity 1 101 0 181 105 93 0 chr4 146670741 146670827 -37617835 + (TA)n Simple_repeat Simple_repeat 1 94 0 24 32 0 0 chr4 146670838 146670869 -37617793 + AT_rich Low_complexity Low_complexity 1 31 0 280 271 122 0 chr4 146671262 146671369 -37617293 - L2 LINE L2 -2 3311 3192 180 329 0 41 chr4 146671429 146671502 -37617160 - MIR SINE MIR 0 262 193 235 186 124 103 chr4 146673930 146674027 -37614635 + MER109 Unknown Unknown 1714 1812 -620 24 32 0 0 chr4 146674451 146674482 -37614180 + AT_rich Low_complexity Low_complexity 1 31 0 275 49 24 0 chr4 146675690 146675731 -37612931 + (TC)n Simple_repeat Simple_repeat 1 42 0 186 349 74 23 chr4 146676097 146676272 -37612390 - MIR SINE MIR -33 229 46 2728 55 6 0 chr4 146676826 146677172 -37611490 + L1PA8 LINE L1 5823 6170 -2 2369 95 0 13 chr4 146679495 146679811 -37608851 - AluSq SINE Alu -1 312 1 557 334 108 23 chr4 146679867 146680295 -37608367 + MLT1K LTR MaLR 106 569 -19 406 285 49 16 chr4 146680578 146680701 -37607961 - MIR3 SINE MIR -10 198 72 2732 32 0 0 chr4 146682194 146682505 -37606157 - AluYb8 SINE Alu -7 311 1 238 276 0 26 chr4 146683328 146683404 -37605258 + CT-rich Low_complexity Low_complexity 5 78 0 2462 176 4 25 chr4 146685261 146685732 -37602930 + MER44D DNA MER2_type 59 574 -31 21 0 0 0 chr4 146686421 146686442 -37602220 + AT_rich Low_complexity Low_complexity 1 21 0 674 298 18 21 chr4 146689357 146689642 -37599020 - L1ME LINE L1 -320 5801 5518 506 304 97 44 chr4 146692948 146693017 -37595645 + MIR SINE MIR 17 81 -181 2683 148 97 14 chr4 146693017 146693532 -37595130 + MER74A LTR ERVL 1 558 0 506 304 97 44 chr4 146693532 146693689 -37594973 + MIR SINE MIR 81 255 -7 213 315 108 39 chr4 146693691 146693821 -37594841 - MIR SINE MIR -117 145 7 2077 142 0 0 chr4 146693954 146694256 -37594406 + AluSx SINE Alu 1 302 -10 352 199 29 15 chr4 146694289 146694425 -37594237 + GA-rich Low_complexity Low_complexity 3 140 0 473 262 124 21 chr4 146694995 146695228 -37593434 - MER102b DNA MER1_type 0 341 85 1247 216 119 22 chr4 146696430 146696791 -37591871 + MSTD LTR MaLR 1 396 0 5149 231 68 52 chr4 146697222 146699718 -37588944 + L1M4 LINE L1 1 2674 -4151 820 196 39 0 chr4 146699719 146700048 -37588614 + L1MB7 LINE L1 5786 6162 -22 588 324 80 86 chr4 146700693 146701230 -37587432 - L2 LINE L2 -420 2894 2361 7950 123 12 22 chr4 146702297 146703594 -37585068 + L1P LINE L1 1 1284 -4862 1634 199 32 32 chr4 146703695 146703944 -37584718 - L1 LINE L1 -2390 4716 4465 1509 130 12 4 chr4 146703944 146704190 -37584472 - L1PB2 LINE L1 -8 6143 5896 1634 199 32 32 chr4 146704190 146704377 -37584285 - L1 LINE L1 -2640 4466 4280 1074 168 0 24 chr4 146704383 146704592 -37584070 - L1 LINE L1 -1917 4229 4026 6935 218 63 70 chr4 146704594 146709226 -37579436 - L1 LINE L1 -2828 4278 1 26 0 0 0 chr4 146709232 146709258 -37579404 + AT_rich Low_complexity Low_complexity 1 26 0 1710 167 25 33 chr4 146709948 146710307 -37578355 - MLT1A1 LTR MaLR 0 365 10 211 238 0 24 chr4 146710311 146710353 -37578309 + MIR SINE MIR 201 241 -21 286 310 124 10 chr4 146711436 146711726 -37576936 - L1ME4a LINE L1 -241 5880 5558 184 299 104 0 chr4 146712110 146712187 -37576475 - L2 LINE L2 -12 3260 3176 333 342 46 46 chr4 146712210 146712447 -37576215 + L1ME4a LINE L1 5398 5634 -2174 362 212 164 20 chr4 146712489 146712635 -37576027 + L1ME4a LINE L1 5954 6120 -1 539 336 54 49 chr4 146712681 146713107 -37575555 + L1MA9 LINE L1 13 440 -6728 704 271 47 91 chr4 146713586 146714092 -37574570 + L1MA9 LINE L1 1578 2061 -5107 * 1662 232 60 2 chr4 146714088 146714658 -37574004 + L1MA9 LINE L1 3870 4472 -2695 242 253 12 60 chr4 146715167 146715250 -37573412 + MLT1F LTR MaLR 108 186 -404 264 293 61 40 chr4 146715319 146715517 -37573145 + MLT1F LTR MaLR 336 537 -5 522 302 71 10 chr4 146715686 146716080 -37572582 + L1M4 LINE L1 4456 4873 -1273 5618 189 46 20 chr4 146716456 146717834 -37570828 + L1MA9 LINE L1 4651 6065 -1102 3504 170 160 19 chr4 146717843 146718762 -37569900 + L1MA9 LINE L1 6275 7323 -10 490 238 189 0 chr4 146720232 146720375 -37568287 + MER5A DNA MER1_type 9 178 -11 * 650 253 78 6 chr4 146720366 146720532 -37568130 - MER5A DNA MER1_type -9 180 3 800 218 56 0 chr4 146723006 146723185 -37565477 + MER5A DNA MER1_type 1 189 0 186 71 0 0 chr4 146723759 146723787 -37564875 + (TTGG)n Simple_repeat Simple_repeat 1 28 0 1585 199 161 31 chr4 146724180 146724365 -37564297 - MLT1F1 LTR MaLR -3 564 404 1709 145 4 0 chr4 146724365 146724636 -37564026 + AluSx SINE Alu 33 304 0 1585 199 161 31 chr4 146724636 146724926 -37563736 - MLT1F1 LTR MaLR -163 404 26 2173 124 3 3 chr4 146724967 146725266 -37563396 + AluSx SINE Alu 1 299 -13 619 172 180 16 chr4 146725419 146725636 -37563026 + L1MDa LINE L1 2350 2617 -3923 234 0 0 0 chr4 146725636 146725662 -37563000 + (CA)n Simple_repeat Simple_repeat 2 27 0 619 172 180 16 chr4 146725662 146725700 -37562962 + L1MDa LINE L1 2617 2647 -3893 2085 183 22 53 chr4 146725706 146726252 -37562410 + L1MD2 LINE L1 5593 6121 -238 898 153 25 85 chr4 146726311 146726547 -37562115 + L1MD2 LINE L1 6137 6358 -1 28931 118 15 69 chr4 146727439 146733097 -37555565 + L1PA7 LINE L1 12 5366 -780 3758 64 0 4 chr4 146733247 146733734 -37554928 + L1PA7 LINE L1 5670 6154 0 303 302 111 0 chr4 146733839 146733965 -37554697 + L1ME4a LINE L1 5978 6117 -4 1012 98 0 0 chr4 146734026 146734159 -37554503 + AluSq/x SINE Alu 1 133 -180 23 68 0 0 chr4 146735029 146735073 -37553589 + AT_rich Low_complexity Low_complexity 1 44 0 259 333 65 9 chr4 146736120 146736228 -37552434 - L2 LINE L2 -14 3299 3186 204 265 132 15 chr4 146736281 146736349 -37552313 + MIR3 SINE MIR 111 186 -22 199 288 30 30 chr4 146736657 146736723 -37551939 + L3 LINE CR1 1505 1570 -7 680 220 11 88 chr4 146737188 146737370 -37551292 - MER5A DNA MER1_type -2 187 20 908 203 6 16 chr4 146737397 146737579 -37551083 - MER5A DNA MER1_type 0 189 10 225 209 0 0 chr4 146739092 146739135 -37549527 + MER94 DNA DNA 1 43 -91 1277 266 127 43 chr4 146739221 146740229 -37548433 - HAL1 LINE L1 -60 2447 1355 544 335 62 9 chr4 146740230 146740783 -37547879 - HAL1 LINE L1 -1181 1326 745 1868 129 11 4 chr4 146741461 146741755 -37546907 - AluSx SINE Alu 0 310 15 6959 60 5 1 chr4 146741988 146743041 -37545621 + L1PA7 LINE L1 5098 6153 -1 280 200 0 0 chr4 146744133 146744183 -37544479 - MER5A DNA MER1_type -128 61 12 214 262 0 0 chr4 146745252 146745294 -37543368 - L2 LINE L2 -11 3261 3220 1114 266 76 20 chr4 146746431 146746837 -37541825 + L2 LINE L2 2885 3313 0 271 316 90 45 chr4 146748282 146748415 -37540247 + MER5A DNA MER1_type 48 186 -3 645 251 53 18 chr4 146748422 146748593 -37540069 - MER5B DNA MER1_type -1 177 1 620 222 105 0 chr4 146749032 146749203 -37539459 - MIR SINE MIR -1 261 73 253 309 32 11 chr4 146751327 146751421 -37537241 - MIR3 SINE MIR -25 183 88 22 0 0 0 chr4 146753566 146753588 -37535074 + AT_rich Low_complexity Low_complexity 1 22 0 398 234 292 31 chr4 146754480 146754672 -37533990 + MIR SINE MIR 21 262 0 523 243 216 7 chr4 146754792 146754940 -37533722 + MER5A DNA MER1_type 11 189 0 737 345 130 31 chr4 146754980 146755717 -37532945 + L2 LINE L2 231 1040 -2274 291 293 49 76 chr4 146755782 146756045 -37532617 + L2 LINE L2 1484 1739 -1575 1187 139 0 0 chr4 146756238 146756404 -37532258 - FRAM SINE Alu -15 161 1 2592 113 30 44 chr4 146757642 146758101 -37530561 + L1PA16 LINE L1 5707 6159 -7 21 0 0 0 chr4 146758458 146758479 -37530183 + AT_rich Low_complexity Low_complexity 1 21 0 58 54 0 0 chr4 146760506 146760599 -37528063 + AT_rich Low_complexity Low_complexity 1 93 0 28 29 0 0 chr4 146761212 146761247 -37527415 + AT_rich Low_complexity Low_complexity 1 35 0 4302 143 43 4 chr4 146763252 146764038 -37524624 + Tigger3b DNA MER2_type 2 818 -413 1440 150 0 4 chr4 146764138 146764372 -37524290 + Tigger3b DNA MER2_type 998 1230 -1 803 239 93 38 chr4 146764426 146764715 -37523947 - MER5C DNA MER1_type -6 318 14 2229 108 0 25 chr4 146764917 146765231 -37523431 + AluSg SINE Alu 1 306 -4 252 122 0 0 chr4 146765553 146765594 -37523068 + (TC)n Simple_repeat Simple_repeat 2 42 0 210 37 0 0 chr4 146765596 146765623 -37523039 + (CA)n Simple_repeat Simple_repeat 1 27 0 221 341 24 48 chr4 146765652 146765778 -37522884 + MIR SINE MIR 6 128 -134 206 342 126 0 chr4 146767513 146767624 -37521038 + MIR3 SINE MIR 38 162 -46 302 213 107 0 chr4 146768188 146768263 -37520399 - L1ME4a LINE L1 -199 5922 5840 258 32 0 0 chr4 146768302 146768333 -37520329 + (TA)n Simple_repeat Simple_repeat 1 31 0 199 388 71 27 chr4 146769363 146769587 -37519075 + L3b LINE CR1 1325 1558 -25 204 340 13 73 chr4 146770923 146771073 -37517589 + MER5A DNA MER1_type 38 189 0 421 139 23 47 chr4 146771628 146771714 -37516948 + L2 LINE L2 3230 3313 0 203 200 0 0 chr4 146772388 146772423 -37516239 + T-rich Low_complexity Low_complexity 2 36 0 326 339 158 48 chr4 146772612 146773004 -37515658 - L2 LINE L2 -1 3271 2837 416 275 39 46 chr4 146773168 146773452 -37515210 - LTR16C LTR ERVL 0 491 210 562 274 44 73 chr4 146773861 146773958 -37514704 - MIR SINE MIR -21 241 143 2079 229 38 26 chr4 146773958 146774490 -37514172 - MLT1F LTR MaLR -4 538 1 562 274 44 73 chr4 146774490 146774586 -37514076 - MIR SINE MIR -119 143 54 2302 90 0 0 chr4 146774586 146774876 -37513786 + AluSc SINE Alu 1 290 -19 562 274 44 73 chr4 146774876 146774929 -37513733 - MIR SINE MIR -208 54 1 489 337 146 16 chr4 146777110 146777615 -37511047 + L2 LINE L2 2728 3293 -20 2342 67 3 13 chr4 146777625 146777939 -37510723 + AluY SINE Alu 1 311 0 2041 9 0 0 chr4 146778051 146778277 -37510385 + AluYa5 SINE Alu 1 226 -85 212 244 0 0 chr4 146779660 146779705 -37508957 + (CATA)n Simple_repeat Simple_repeat 3 47 0 457 115 26 0 chr4 146779711 146779789 -37508873 - MADE1 DNA Mariner 0 80 1 1139 255 64 40 chr4 146779831 146780349 -37508313 + MLT1H LTR MaLR 5 534 -15 2154 106 63 29 chr4 146780757 146781106 -37507556 + THE1B LTR MaLR 4 364 0 443 291 274 23 chr4 146781297 146781541 -37507121 - L2 LINE L2 -634 2680 2498 432 0 0 0 chr4 146781541 146781589 -37507073 + (TG)n Simple_repeat Simple_repeat 2 49 0 443 291 274 23 chr4 146781589 146781695 -37506967 - L2 LINE L2 -816 2498 2242 690 301 144 12 chr4 146781697 146782036 -37506626 - L2 LINE L2 -440 2874 2491 214 328 0 0 chr4 146782092 146782156 -37506506 - L2 LINE L2 -2465 849 786 6705 127 52 12 chr4 146782393 146782967 -37505695 + Tigger3b DNA MER2_type 1 550 -2478 3287 91 11 2 chr4 146782967 146783416 -37505246 - MLT2A2 LTR ERVL 0 453 1 6705 127 52 12 chr4 146783416 146784024 -37504638 + Tigger3b DNA MER2_type 550 1231 0 2344 102 3 0 chr4 146784607 146784911 -37503751 + AluSp SINE Alu 1 305 -8 510 297 14 7 chr4 146784915 146785060 -37503602 - MER5A DNA MER1_type -43 146 1 593 215 17 12 chr4 146785252 146785499 -37503163 + GA-rich Low_complexity Low_complexity 1 248 0 1148 86 29 19 chr4 146785499 146785864 -37502798 + (GAAA)n Simple_repeat Simple_repeat 1 368 0 433 161 37 37 chr4 146785876 146786037 -37502625 + GA-rich Low_complexity Low_complexity 2 162 0 1971 255 105 70 chr4 146786385 146786733 -37501929 - HAL1 LINE L1 -52 2455 2121 1940 174 8 14 chr4 146786733 146787100 -37501562 - MLT1A1 LTR MaLR 0 365 1 1971 255 105 70 chr4 146787100 146787994 -37500668 - HAL1 LINE L1 -386 2121 1137 725 203 0 8 chr4 146787994 146788122 -37500540 + FLAM_A SINE Alu 2 128 -5 1971 255 105 70 chr4 146788122 146788530 -37500132 - HAL1 LINE L1 -1370 1137 745 243 282 39 13 chr4 146788591 146788669 -37499993 - HAL1 LINE L1 -1887 620 541 22 0 0 0 chr4 146792035 146792057 -37496605 + AT_rich Low_complexity Low_complexity 1 22 0 309 82 0 0 chr4 146792253 146792302 -37496360 + (TCTCCC)n Simple_repeat Simple_repeat 1 49 0 6956 65 17 24 chr4 146792314 146793983 -37494679 + SVA Other Other 2 1385 -1 1264 168 7 64 chr4 146794009 146794307 -37494355 + L1MB8 LINE L1 5880 6160 -18 2407 121 16 11 chr4 146794308 146794681 -37493981 - THE1C LTR MaLR 0 375 1 412 292 13 29 chr4 146796059 146796212 -37492450 - MIR3 SINE MIR -36 172 21 493 235 262 0 chr4 146797488 146797637 -37491025 + MER5A DNA MER1_type 2 189 0 1413 240 93 20 chr4 146798968 146799505 -37489157 + HAL1 LINE L1 1088 1663 -844 740 234 67 94 chr4 146799540 146799755 -37488907 + HAL1 LINE L1 1998 2217 -290 390 74 0 0 chr4 146799755 146799809 -37488853 + (TG)n Simple_repeat Simple_repeat 2 55 0 740 234 67 94 chr4 146799809 146799927 -37488735 + HAL1 LINE L1 2217 2337 -170 1469 149 165 0 chr4 146799927 146800196 -37488466 + AluSx SINE Alu 3 311 0 740 234 67 94 chr4 146800196 146800382 -37488280 + HAL1 LINE L1 2337 2505 -2 743 285 41 5 chr4 146800423 146800644 -37488018 + MIR SINE MIR 14 242 -20 1091 283 54 70 chr4 146800649 146801410 -37487252 - L2 LINE L2 -5 3308 2564 197 286 0 0 chr4 146801456 146801498 -37487164 - MIR SINE MIR -107 101 60 191 311 143 34 chr4 146802486 146802605 -37486057 - L2 LINE L2 -652 2662 2531 386 286 17 0 chr4 146803123 146803242 -37485420 - MIR SINE MIR -70 192 72 207 0 0 0 chr4 146804512 146804535 -37484127 + (CA)n Simple_repeat Simple_repeat 2 24 0 318 389 50 0 chr4 146804682 146804903 -37483759 - L1MC/D LINE L1 -2202 5606 5375 21 0 0 0 chr4 146805012 146805033 -37483629 + AT_rich Low_complexity Low_complexity 1 21 0 1891 152 3 14 chr4 146805063 146805360 -37483302 - AluJo SINE Alu -18 294 1 2158 151 12 0 chr4 146806098 146806442 -37482220 - MER7A DNA MER2_type 0 346 1 1792 189 30 0 chr4 146806734 146807105 -37481557 - L1MC3 LINE L1 0 8203 7822 540 224 75 7 chr4 146807106 146807253 -37481409 + MLT1B LTR MaLR 4 160 -230 953 165 87 17 chr4 146807333 146807535 -37481127 - L1MC3 LINE L1 -376 7409 7222 286 299 23 0 chr4 146807539 146807626 -37481036 - MLT1F1 LTR MaLR -442 125 37 9258 180 29 19 chr4 146807627 146810114 -37478548 - L1MC3 LINE L1 -687 7516 5007 3402 192 107 55 chr4 146810115 146810576 -37478086 - L1MC3 LINE L1 -4562 2002 1566 2107 76 0 0 chr4 146810576 146810851 -37477811 - L1PA5 LINE L1 -6 6148 5874 3402 192 107 55 chr4 146810851 146811790 -37476872 - L1MC3 LINE L1 -4998 1566 515 1249 172 94 22 chr4 146811808 146812075 -37476587 - MLT2B3 LTR ERVL -268 286 1 26 64 0 0 chr4 146812639 146812686 -37475976 + AT_rich Low_complexity Low_complexity 1 47 0 2118 135 39 33 chr4 146814553 146814915 -37473747 - THE1B LTR MaLR 0 364 1 239 281 0 62 chr4 146815307 146815371 -37473291 - MER91A DNA MER1_type -1 195 136 1487 205 108 0 chr4 146815930 146816237 -37472425 + MER58B DNA MER1_type 2 341 0 205 226 29 29 chr4 146816301 146816403 -37472259 + (TTA)n Simple_repeat Simple_repeat 3 104 0 8563 142 10 5 chr4 146816641 146817975 -37470687 + L1PA16 LINE L1 982 2321 -4528 331 228 33 0 chr4 146817986 146818078 -37470584 + L1 LINE L1 3254 3348 -2798 * 5166 143 47 7 chr4 146818064 146819146 -37469516 + L1PA16 LINE L1 5748 6869 0 1058 142 71 31 chr4 146819378 146819604 -37469058 - L1MA8 LINE L1 -6 6285 6051 28 29 0 0 chr4 146819892 146819927 -37468735 + AT_rich Low_complexity Low_complexity 1 35 0 2619 61 0 0 chr4 146821325 146821635 -37467027 - AluY SINE Alu -1 310 1 1944 57 4 0 chr4 146821701 146821946 -37466716 + L1PA5 LINE L1 5906 6151 -3 29 47 0 0 chr4 146821946 146821989 -37466673 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr4 146822036 146822058 -37466604 + AT_rich Low_complexity Low_complexity 1 22 0 226 240 0 0 chr4 146822171 146822221 -37466441 - MER91A DNA MER1_type -62 128 79 214 233 23 0 chr4 146822317 146822360 -37466302 - MER91A DNA MER1_type -148 48 5 700 306 85 77 chr4 146823058 146823607 -37465055 - L2 LINE L2 0 3313 2746 1832 146 70 20 chr4 146823607 146823964 -37464698 - THE1C LTR MaLR 0 375 1 700 306 85 77 chr4 146823964 146824180 -37464482 - L2 LINE L2 -567 2746 2533 225 61 326 0 chr4 146824772 146824821 -37463841 + MLT1H LTR MaLR 123 187 -362 244 271 14 0 chr4 146825183 146825253 -37463409 - Charlie7 DNA MER1_type -2515 97 27 198 271 102 0 chr4 146825774 146825833 -37462829 - MIR SINE MIR -74 188 124 276 329 0 14 chr4 146826521 146826594 -37462068 - L2 LINE L2 -48 3224 3153 255 150 0 0 chr4 146826598 146826638 -37462024 - L2 LINE L2 -12 3301 3262 1175 219 84 38 chr4 146826921 146827089 -37461573 + MLT1A1 LTR MaLR 1 160 -205 2117 137 129 3 chr4 146827089 146827469 -37461193 + MSTA LTR MaLR 1 428 0 1175 219 84 38 chr4 146827469 146827647 -37461015 + MLT1A1 LTR MaLR 160 363 -2 1420 243 20 11 chr4 146827649 146828003 -37460659 + MLT1A1-int LTR MaLR 1 357 -1378 3497 188 48 3 chr4 146828366 146829192 -37459470 - L1PB1 LINE L1 -1557 4589 3633 * 6414 133 23 7 chr4 146829185 146830377 -37458285 + L1PB1 LINE L1 4576 5799 -352 486 0 0 0 chr4 146830377 146830431 -37458231 + (TA)n Simple_repeat Simple_repeat 1 54 0 6414 133 23 7 chr4 146830431 146830788 -37457874 + L1PB1 LINE L1 5799 6149 -2 29 28 0 0 chr4 146830844 146830880 -37457782 + AT_rich Low_complexity Low_complexity 1 36 0 330 254 139 52 chr4 146831057 146831165 -37457497 - MIR SINE MIR -2 260 130 2486 135 45 116 chr4 146831165 146831719 -37456943 + MLT2B2 LTR ERVL 1 515 0 330 254 139 52 chr4 146831719 146831783 -37456879 - MIR SINE MIR -132 130 73 2351 137 93 5 chr4 146832249 146832681 -37455981 + L1MA8 LINE L1 5807 6276 -15 1620 124 28 0 chr4 146833229 146833479 -37455183 + AluSx SINE Alu 1 257 -55 553 184 8 8 chr4 146833488 146833613 -37455049 + GA-rich Low_complexity Low_complexity 3 127 0 237 98 0 0 chr4 146834100 146834141 -37454521 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 668 227 28 34 chr4 146835243 146835419 -37453243 - L1ME3 LINE L1 -13 6149 5975 478 95 12 0 chr4 146835421 146835505 -37453157 - L1MA7 LINE L1 0 6291 6207 201 176 0 0 chr4 146835899 146835933 -37452729 + (TA)n Simple_repeat Simple_repeat 2 35 0 1402 258 104 5 chr4 146837497 146838192 -37450470 - L1ME3 LINE L1 -208 5962 5199 25 65 0 0 chr4 146838309 146838355 -37450307 + AT_rich Low_complexity Low_complexity 1 46 0 1006 151 23 0 chr4 146838355 146838527 -37450135 - L1MA3 LINE L1 0 6305 6130 14530 109 10 8 chr4 146838552 146841509 -37447153 - L1PA8A LINE L1 -2 6129 3152 783 244 134 43 chr4 146841535 146841897 -37446765 + L1MEc LINE L1 2131 2541 -3674 2248 97 0 10 chr4 146841897 146842196 -37446466 + AluSp SINE Alu 1 296 -17 783 244 134 43 chr4 146842196 146842411 -37446251 + L1MEc LINE L1 2541 2735 -3480 1683 144 19 47 chr4 146843137 146843456 -37445206 + AluJo SINE Alu 2 311 -1 214 211 0 0 chr4 146843721 146843759 -37444903 - MIR SINE MIR -6 256 219 575 307 55 21 chr4 146843782 146844020 -37444642 + MIR SINE MIR 15 260 -2 228 67 0 0 chr4 146844072 146844102 -37444560 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1960 144 15 35 chr4 146845240 146845579 -37443083 - THE1B LTR MaLR 0 364 33 261 256 74 87 chr4 146845660 146845742 -37442920 + L1ME4a LINE L1 5529 5611 -510 2378 98 3 0 chr4 146845742 146846049 -37442613 + AluSp SINE Alu 1 308 -5 261 256 74 87 chr4 146846049 146846196 -37442466 + L1ME4a LINE L1 5611 5755 -366 355 274 45 45 chr4 146846317 146846474 -37442188 + L1ME4a LINE L1 5944 6100 -21 733 190 28 53 chr4 146846476 146846794 -37441868 + MSTD LTR MaLR 3 396 0 207 0 0 0 chr4 146847234 146847257 -37441405 + (TG)n Simple_repeat Simple_repeat 2 24 0 2855 226 30 5 chr4 146847310 146847947 -37440715 - MER82 DNA MER2_type 0 653 1 2010 166 19 0 chr4 146847979 146848304 -37440358 + Tigger3(Golem) DNA MER2_type 1 331 -2698 243 91 0 0 chr4 146848298 146848331 -37440331 + Tigger3(Golem) DNA MER2_type 2195 2227 -802 * 1897 75 14 84 chr4 146848344 146848689 -37439973 - Tigger3(Golem) DNA MER2_type -504 2525 2205 324 336 8 0 chr4 146848719 146848841 -37439821 - L1ME LINE L1 -512 5658 5536 5602 78 7 10 chr4 146848843 146849616 -37439046 - L1PA13 LINE L1 -4 6159 5390 1423 268 47 18 chr4 146849620 146850218 -37438444 + L2 LINE L2 2697 3312 -1 1619 195 3 7 chr4 146850299 146850591 -37438071 - AluJb SINE Alu -11 301 11 1737 167 44 34 chr4 146850629 146851036 -37437626 + L1MC3 LINE L1 6698 7108 -677 1001 173 0 26 chr4 146851036 146851384 -37437278 + MLT1B LTR MaLR 1 390 0 415 170 40 70 chr4 146851384 146851468 -37437194 + MLT1F1 LTR MaLR 37 117 -450 2946 192 37 5 chr4 146851469 146852062 -37436600 + L1MD3 LINE L1 7384 7995 0 242 266 55 9 chr4 146852055 146852164 -37436498 + L1ME4a LINE L1 5315 5428 -742 * 463 256 8 24 chr4 146852333 146852458 -37436204 - MIR SINE MIR -4 258 136 480 246 149 31 chr4 146852504 146852924 -37435738 + MLT1H1 LTR MaLR 25 547 -8 257 237 269 0 chr4 146852925 146853018 -37435644 - MIR SINE MIR -89 173 56 664 254 24 118 chr4 146853278 146853566 -37435096 - MIR SINE MIR 0 262 2 467 254 31 8 chr4 146853704 146853834 -37434828 + L1ME4a LINE L1 5984 6116 -5 30 27 0 0 chr4 146853873 146853910 -37434752 + AT_rich Low_complexity Low_complexity 1 37 0 254 317 12 0 chr4 146854049 146854131 -37434531 + L1ME4a LINE L1 5511 5593 -528 325 257 50 21 chr4 146854166 146854306 -37434356 + L1ME4a LINE L1 5706 5849 -272 1500 204 13 23 chr4 146854346 146854645 -37434017 - AluJb SINE Alu -13 299 4 1643 187 14 20 chr4 146855687 146855981 -37432681 - AluJo SINE Alu -20 292 1 1400 208 11 15 chr4 146856107 146856381 -37432281 + AluJo SINE Alu 3 275 -37 642 13 0 0 chr4 146856384 146856459 -37432203 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 1245 82 0 0 chr4 146856459 146856693 -37431969 + (GGAA)n Simple_repeat Simple_repeat 1 234 0 24 53 0 0 chr4 146857084 146857122 -37431540 + AT_rich Low_complexity Low_complexity 1 38 0 468 258 181 13 chr4 146857555 146857710 -37430952 - MER5A DNA MER1_type 0 189 9 2218 110 0 3 chr4 146857787 146858097 -37430565 + AluSq SINE Alu 1 309 -4 1056 165 67 0 chr4 146858130 146858324 -37430338 - MER3 DNA MER1_type -1 208 2 180 0 0 0 chr4 146858804 146858824 -37429838 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 2285 175 7 29 chr4 146858842 146859254 -37429408 - MLT2D LTR ERVL -11 403 1 835 194 38 38 chr4 146859842 146860053 -37428609 - L1MA9 LINE L1 0 6312 6102 618 159 18 0 chr4 146860026 146860139 -37428523 + L1MA9 LINE L1 6021 6135 -177 * 1025 164 0 56 chr4 146860936 146861131 -37427531 + Tigger1 DNA MER2_type 2 185 -2233 13946 124 26 9 chr4 146861572 146862613 -37426049 + Tigger1 DNA MER2_type 177 1200 -1218 2322 102 0 0 chr4 146862613 146862916 -37425746 - AluY SINE Alu -8 303 1 13946 124 26 9 chr4 146862916 146864080 -37424582 + Tigger1 DNA MER2_type 1200 2418 0 222 344 38 48 chr4 146864718 146864904 -37423758 - MIR SINE MIR -44 218 35 1568 217 33 17 chr4 146865979 146866338 -37422324 + MLT1A1 LTR MaLR 1 365 0 1568 155 90 0 chr4 146866406 146866684 -37421978 + AluJo SINE Alu 1 303 -9 217 197 26 0 chr4 146866800 146866876 -37421786 + (TA)n Simple_repeat Simple_repeat 2 79 0 4615 209 20 77 chr4 146866896 146868643 -37420019 - L1MA9 LINE L1 -38 6274 4643 971 192 17 0 chr4 146868644 146868816 -37419846 + FRAM SINE Alu 1 174 -2 3077 190 40 3 chr4 146868816 146869447 -37419215 - L1MA9 LINE L1 -1496 4650 3997 25 65 0 0 chr4 146869447 146869493 -37419169 + AT_rich Low_complexity Low_complexity 1 46 0 38869 39 0 2 chr4 146869839 146875393 -37413269 + L1PA3 LINE L1 612 6153 -2 397 281 33 33 chr4 146877003 146877124 -37411538 + MIR SINE MIR 8 128 -134 596 157 9 0 chr4 146877302 146877410 -37411252 + AluJb SINE Alu 202 310 -2 436 240 74 16 chr4 146877462 146877583 -37411079 - MIR3 SINE MIR -14 194 67 333 47 0 0 chr4 146878610 146878653 -37410009 + (CAT)n Simple_repeat Simple_repeat 2 44 0 853 214 46 0 chr4 146878659 146878832 -37409830 - MIR SINE MIR -37 225 45 228 309 101 12 chr4 146879603 146879771 -37408891 + L2 LINE L2 2118 2300 -1014 264 341 104 18 chr4 146879897 146880061 -37408601 + MER5B DNA MER1_type 1 178 0 736 242 44 6 chr4 146880285 146880467 -37408195 + MER5A DNA MER1_type 1 189 0 1094 224 51 45 chr4 146931498 146931811 -37356851 - MLT1A2 LTR MaLR 0 374 60 277 357 0 0 chr4 146932518 146932616 -37356046 - L2 LINE L2 -1 3271 3174 2173 151 67 10 chr4 146932653 146933056 -37355606 - MSTB LTR MaLR 0 426 1 805 166 0 0 chr4 146934942 146935087 -37353575 - L1PB4 LINE L1 0 6156 6012 12077 62 7 3 chr4 146935205 146936840 -37351822 - L1P LINE L1 -4502 1644 3 447 337 79 17 chr4 146937049 146937227 -37351435 - MIR3 SINE MIR -1 207 19 356 280 41 25 chr4 146937566 146937839 -37350823 + L1MC4a LINE L1 5683 5791 -330 995 230 5 5 chr4 146938181 146938398 -37350264 + MER58A DNA MER1_type 2 218 -6 293 212 118 35 chr4 146939163 146939248 -37349414 + MIR3 SINE MIR 93 184 -24 602 303 25 30 chr4 146939268 146939284 -37349378 + MIR SINE MIR 66 81 -181 1197 156 63 98 chr4 146939284 146939662 -37349000 - MLT1A1 LTR MaLR 0 365 1 602 303 25 30 chr4 146939662 146939843 -37348819 + MIR SINE MIR 81 262 0 361 207 12 0 chr4 146939969 146940051 -37348611 - LTR37A LTR ERV1 -123 303 221 1394 220 55 12 chr4 146940051 146940397 -37348265 - MLT1A2 LTR MaLR 0 374 14 1999 207 15 0 chr4 146940418 146940824 -37347838 - MLT1A2-int LTR MaLR -9 1726 1315 12034 28 2 0 chr4 146940996 146942873 -37345789 - L1P1 LINE L1 -379 5776 3896 * 13223 34 1 0 chr4 146942864 146944553 -37344109 + L1P1 LINE L1 2195 3884 -2262 228 239 14 42 chr4 146944568 146944639 -37344023 - HAL1 LINE L1 -2436 71 3 927 73 0 0 chr4 146944849 146944959 -37343703 + AluSg/x SINE Alu 87 196 -116 1383 129 0 0 chr4 146945067 146945261 -37343401 - AluSx SINE Alu -118 194 1 2386 80 0 0 chr4 146945266 146945567 -37343095 - AluY SINE Alu -10 301 1 757 92 9 0 chr4 146945567 146945676 -37342986 + L1MD2 LINE L1 5582 5691 -668 2583 213 37 2 chr4 146946843 146947356 -37341306 + L1MD2 LINE L1 5679 6209 -150 * 3368 200 50 19 chr4 146947353 146947748 -37340914 - L1M4 LINE L1 -614 5570 5189 2289 116 0 0 chr4 146947748 146948058 -37340604 - AluSx SINE Alu -2 310 1 3368 200 50 19 chr4 146948058 146948829 -37339833 - L1M4 LINE L1 -995 5189 4279 1087 230 63 0 chr4 146948851 146949090 -37339572 - Charlie1a DNA MER1_type -1201 254 1 3170 120 5 0 chr4 146949098 146949524 -37339138 + MER1A DNA MER1_type 1 428 -101 691 168 40 104 chr4 146949942 146950144 -37338518 - MER53 DNA DNA 0 189 1 1160 276 59 18 chr4 146950147 146950534 -37338128 + LTR16C LTR ERVL 89 491 0 314 245 126 38 chr4 146950671 146950830 -37337832 - MIR SINE MIR -22 240 68 1865 159 37 0 chr4 146950840 146951136 -37337526 + AluJo SINE Alu 5 311 -1 2598 40 0 0 chr4 146951142 146951440 -37337222 + AluY SINE Alu 1 298 -13 2725 158 19 0 chr4 146951892 146952311 -37336351 + MSTC LTR MaLR 2 428 0 256 274 83 159 chr4 146952881 146953133 -37335529 + MLT1K LTR MaLR 10 242 -346 332 292 67 17 chr4 146953415 146953535 -37335127 + MLT1K LTR MaLR 448 573 -15 853 231 21 5 chr4 146953810 146953996 -37334666 + MLT1E LTR MaLR 403 591 -2 382 250 0 0 chr4 146953996 146954076 -37334586 - ERVL LTR ERVL -2787 2977 2898 335 258 0 11 chr4 146954254 146954347 -37334315 + MLT2F LTR ERVL 506 597 -66 204 40 0 0 chr4 146954347 146954372 -37334290 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 2339 79 0 7 chr4 146954695 146954987 -37333675 + AluSg1 SINE Alu 1 290 -19 750 185 8 0 chr4 146955035 146955154 -37333508 + FLAM_A SINE Alu 1 120 -13 2537 237 75 22 chr4 146955310 146955906 -37332756 - MLT2E LTR ERVL 0 628 1 628 247 64 41 chr4 146956372 146956614 -37332048 - MIR SINE MIR -13 249 5 220 253 71 71 chr4 146957034 146957133 -37331529 - L2 LINE L2 -5 3267 3169 1450 120 0 66 chr4 146957302 146957560 -37331102 - AluJo SINE Alu -6 306 66 648 265 121 26 chr4 146957675 146957947 -37330715 + LTR16A1 LTR ERVL 160 457 0 277 330 60 41 chr4 146958370 146958637 -37330025 - L2 LINE L2 -1478 1836 1565 2198 151 56 60 chr4 146958786 146959154 -37329508 - MSTA LTR MaLR 0 428 60 2804 110 3 3 chr4 146959154 146959518 -37329144 + THE1B LTR MaLR 1 364 0 11026 97 25 60 chr4 146959519 146961156 -37327506 + THE1B-int LTR MaLR 2 1580 0 2560 128 17 3 chr4 146961156 146961515 -37327147 + THE1B LTR MaLR 1 364 0 2198 151 56 60 chr4 146961515 146961573 -37327089 - MSTA LTR MaLR -366 62 1 336 48 0 0 chr4 146961822 146961864 -37326798 + (TA)n Simple_repeat Simple_repeat 1 42 0 1330 136 9 14 chr4 146962216 146962429 -37326233 + AluJb SINE Alu 85 296 -16 568 284 73 47 chr4 146962960 146963047 -37325615 + L2 LINE L2 3032 3115 -198 2209 101 0 20 chr4 146963047 146963344 -37325318 + AluSg SINE Alu 1 291 -19 568 284 73 47 chr4 146963344 146963531 -37325131 + L2 LINE L2 3115 3313 0 181 268 0 0 chr4 146963556 146963597 -37325065 + L2 LINE L2 1890 1930 -1384 * 256 174 22 0 chr4 146963591 146963637 -37325025 - L2 LINE L2 -256 3057 3011 234 85 51 51 chr4 146965670 146965729 -37322933 + GA-rich Low_complexity Low_complexity 2 60 0 234 0 0 0 chr4 146965920 146965946 -37322716 + (CA)n Simple_repeat Simple_repeat 1 26 0 285 145 0 0 chr4 146965947 146966009 -37322653 + (TC)n Simple_repeat Simple_repeat 1 62 0 252 0 0 0 chr4 146966017 146966045 -37322617 + (CA)n Simple_repeat Simple_repeat 1 28 0 278 304 91 43 chr4 146966082 146966568 -37322094 + L1M4 LINE L1 4259 4767 -1379 439 253 11 0 chr4 146966971 146967062 -37321600 - MER20 DNA MER1_type -13 206 115 191 235 20 0 chr4 146967064 146967115 -37321547 + L2 LINE L2 2698 2749 -565 289 125 0 0 chr4 146967115 146967155 -37321507 + U2 snRNA snRNA 1 40 -148 288 169 296 0 chr4 146967260 146967331 -37321331 - MER20 DNA MER1_type -127 92 1 2335 293 161 32 chr4 146967395 146967805 -37320857 + L2 LINE L2 1229 1584 -1730 252 0 0 0 chr4 146967805 146967833 -37320829 + (TC)n Simple_repeat Simple_repeat 1 28 0 2335 293 161 32 chr4 146967833 146968803 -37319859 + L2 LINE L2 1584 2788 -526 457 339 67 18 chr4 146968828 146969052 -37319610 + LTR16B LTR ERVL 34 268 -196 1085 56 0 28 chr4 146969198 146969341 -37319321 - AluSc SINE Alu -5 304 166 767 293 111 24 chr4 146969410 146969861 -37318801 + L2 LINE L2 2804 3293 -20 2748 64 6 9 chr4 146969984 146970328 -37318334 + L1PA8 LINE L1 5823 6165 -7 2188 156 5 38 chr4 146972568 146972940 -37315722 + MLT1A1 LTR MaLR 4 363 -2 2503 113 15 59 chr4 146973880 146974288 -37314374 + MLT1B LTR MaLR 1 390 0 1725 153 30 34 chr4 146974693 146974988 -37313674 - AluJo SINE Alu -18 294 1 22 56 0 0 chr4 146975039 146975075 -37313587 + AT_rich Low_complexity Low_complexity 1 36 0 2316 159 47 25 chr4 146975253 146975481 -37313181 + L1MA7 LINE L1 5594 5816 -475 2327 109 0 3 chr4 146975481 146975785 -37312877 + AluSx SINE Alu 1 303 -9 2316 159 47 25 chr4 146975785 146976027 -37312635 + L1MA7 LINE L1 5816 6074 -217 563 244 99 23 chr4 146976715 146976887 -37311775 + MER58B DNA MER1_type 155 339 -2 285 323 73 16 chr4 146976937 146977061 -37311601 + L2 LINE L2 3128 3258 -14 703 251 83 73 chr4 146977251 146977661 -37311001 + MLT1H LTR MaLR 136 549 0 12620 42 3 3 chr4 146977804 146977815 -37310847 - L1P LINE L1 -2882 3264 3254 18029 30 0 0 chr4 146977815 146980589 -37308073 - L1PA4 LINE L1 0 6155 3381 12620 42 3 3 chr4 146980589 146982122 -37306540 - L1P LINE L1 -2892 3254 1721 1467 142 28 12 chr4 146982222 146982476 -37306186 + AluSx SINE Alu 35 292 -20 1218 146 5 38 chr4 146983464 146983676 -37304986 - AluJo SINE Alu -21 291 87 1840 152 35 0 chr4 146983689 146983972 -37304690 - AluJo SINE Alu -16 296 4 345 259 12 12 chr4 146984031 146984116 -37304546 + L2 LINE L2 3187 3271 -1 2453 76 0 7 chr4 146984273 146984576 -37304086 + AluY SINE Alu 1 301 -10 2066 105 10 36 chr4 146984819 146985123 -37303539 + AluSx SINE Alu 9 304 -8 25 31 0 0 chr4 146985298 146985330 -37303332 + AT_rich Low_complexity Low_complexity 1 32 0 324 83 0 0 chr4 146985575 146985623 -37303039 + (CAATA)n Simple_repeat Simple_repeat 3 50 0 21 0 0 0 chr4 146986319 146986340 -37302322 + AT_rich Low_complexity Low_complexity 1 21 0 715 278 105 17 chr4 146986537 146986967 -37301695 + LTR33 LTR ERVL 4 517 -4 2151 139 76 3 chr4 146987288 146987656 -37301006 + L1MA5 LINE L1 5906 6300 0 361 298 71 19 chr4 146987764 146987950 -37300712 - MLT1J2 LTR MaLR -203 206 15 417 338 20 0 chr4 146988189 146988340 -37300322 - ERVL LTR ERVL -2213 3551 3398 1281 305 58 17 chr4 146988362 146989331 -37299331 - ERVL LTR ERVL -2271 3214 2165 216 241 0 0 chr4 146989336 146989394 -37299268 + (TG)n Simple_repeat Simple_repeat 1 58 0 873 309 41 10 chr4 146989394 146989808 -37298854 - ERVL LTR ERVL -3574 2190 1764 400 292 71 52 chr4 146990400 146990725 -37297937 - L1MC5 LINE L1 -316 7645 7315 21 0 0 0 chr4 146990870 146990891 -37297771 + AT_rich Low_complexity Low_complexity 1 21 0 1724 118 63 11 chr4 146990990 146991260 -37297402 - MER7A DNA MER2_type 0 346 65 366 149 164 0 chr4 146991309 146991376 -37297286 - MER7A DNA MER2_type -270 78 1 342 308 149 41 chr4 146992331 146992435 -37296227 + L3 LINE CR1 1256 1347 -230 4071 130 14 90 chr4 146992435 146993226 -37295436 - L1MB3 LINE L1 -5 6178 5448 342 308 149 41 chr4 146993226 146993316 -37295346 + L3 LINE CR1 1347 1471 -106 462 316 101 0 chr4 146993318 146993457 -37295205 + MER91A DNA MER1_type 4 156 -40 795 236 48 40 chr4 146993672 146994147 -37294515 + MLT1G1 LTR MaLR 3 595 0 257 305 76 9 chr4 146997225 146997330 -37291332 + MIR SINE MIR 64 175 -87 2067 151 0 10 chr4 146997615 146997926 -37290736 - AluJo SINE Alu -4 308 1 207 0 0 0 chr4 146998167 146998190 -37290472 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 643 316 36 8 chr4 146998305 146998555 -37290107 + MIR SINE MIR 1 257 -5 284 221 23 0 chr4 146999188 146999274 -37289388 + (CAGAGA)n Simple_repeat Simple_repeat 3 90 0 912 94 17 33 chr4 147000094 147000274 -37288388 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 296 159 0 16 chr4 147000259 147000322 -37288340 + GA-rich Low_complexity Low_complexity 2 63 0 * 782 225 12 42 chr4 147000361 147000601 -37288061 + HAL1 LINE L1 1709 1941 -566 429 138 0 0 chr4 147000649 147000729 -37287933 + (TG)n Simple_repeat Simple_repeat 2 81 0 401 202 17 142 chr4 147000819 147000985 -37287677 + HAL1 LINE L1 2287 2417 -90 1322 249 101 44 chr4 147000985 147001510 -37287152 + MLT1H1 LTR MaLR 1 555 0 401 202 17 142 chr4 147001510 147001576 -37287086 + HAL1 LINE L1 2417 2490 -17 996 201 0 0 chr4 147001579 147001738 -37286924 - AluJb SINE Alu -24 288 130 26 0 0 0 chr4 147001745 147001771 -37286891 + AT_rich Low_complexity Low_complexity 1 26 0 739 169 75 0 chr4 147001776 147001936 -37286726 + L1MD2 LINE L1 6175 6346 -13 2352 102 3 0 chr4 147002170 147002474 -37286188 + AluSx SINE Alu 1 305 -7 477 175 0 0 chr4 147002487 147002586 -37286076 - L1MC4a LINE L1 -304 5817 5730 1843 173 17 0 chr4 147003357 147003658 -37285004 + AluJo SINE Alu 1 306 -6 358 308 0 0 chr4 147003993 147004097 -37284565 - MER94 DNA DNA 0 134 31 21 36 0 0 chr4 147004411 147004439 -37284223 + AT_rich Low_complexity Low_complexity 1 28 0 804 207 48 5 chr4 147004734 147004922 -37283740 + MER74A LTR ERVL 1 196 -362 1022 107 7 0 chr4 147004927 147005076 -37283586 - LTR8 LTR ERV1 -18 673 524 1354 99 0 0 chr4 147005076 147005275 -37283387 - AluSg/x SINE Alu 0 311 113 2126 101 7 16 chr4 147006330 147006638 -37282024 + AluSx SINE Alu 1 305 -7 2316 110 37 47 chr4 147007120 147007501 -37281161 - MER51B LTR ERV1 0 377 1 458 138 0 0 chr4 147007852 147007917 -37280745 - AluJ/FLAM SINE Alu -234 78 14 409 291 43 17 chr4 147008070 147008300 -37280362 - HAL1 LINE L1 -860 1647 1412 1680 167 7 11 chr4 147008351 147008627 -37280035 - AluJo SINE Alu -21 291 17 2349 306 65 44 chr4 147008714 147009526 -37279136 - ERVL LTR ERVL -2357 3407 2549 4353 121 15 48 chr4 147009526 147010239 -37278423 + LTR8 LTR ERV1 1 690 -1 2349 306 65 44 chr4 147010239 147010894 -37277768 - ERVL LTR ERVL -3215 2549 1909 412 315 55 76 chr4 147011360 147011598 -37277064 + LTR16B LTR ERVL 18 250 -214 881 182 0 13 chr4 147011705 147011859 -37276803 - FRAM SINE Alu -17 159 8 1419 178 57 27 chr4 147011978 147012309 -37276353 - MLT1C LTR MaLR -121 346 6 1466 174 81 79 chr4 147013249 147013514 -37275148 - Charlie4a DNA MER1_type -1453 508 240 2220 114 0 0 chr4 147013514 147013822 -37274840 - AluSx SINE Alu -4 308 1 1466 174 81 79 chr4 147013822 147014026 -37274636 - Charlie4a DNA MER1_type -1721 240 38 1715 206 11 8 chr4 147014433 147014797 -37273865 + MLT1A1 LTR MaLR 1 365 0 202 274 20 0 chr4 147014859 147014910 -37273752 - L2 LINE L2 -18 3254 3203 2402 103 0 0 chr4 147015033 147015344 -37273318 + AluSx SINE Alu 1 311 -1 321 270 86 80 chr4 147015566 147015617 -37273045 - MIR3 SINE MIR -6 202 153 2421 88 0 7 chr4 147015617 147015925 -37272737 + AluSq SINE Alu 1 306 -7 321 270 86 80 chr4 147015925 147016036 -37272626 - MIR3 SINE MIR -55 153 39 2037 152 0 3 chr4 147016263 147016560 -37272102 - AluSx SINE Alu -16 296 1 1164 240 14 82 chr4 147016564 147016825 -37271837 + MLT2B1 LTR ERVL 1 225 -295 2207 132 0 0 chr4 147016825 147017135 -37271527 - AluSq SINE Alu -3 310 1 1164 240 14 82 chr4 147017135 147017286 -37271376 + MLT2B1 LTR ERVL 225 385 -135 288 215 0 15 chr4 147017378 147017443 -37271219 + MLT2D LTR ERVL 304 367 -47 1984 177 0 0 chr4 147017577 147017888 -37270774 - AluJo SINE Alu -1 311 1 213 262 0 0 chr4 147018168 147018210 -37270452 - MIR SINE MIR -3 259 218 1192 267 122 48 chr4 147018218 147018479 -37270183 - L2 LINE L2 0 3313 3073 1736 189 10 3 chr4 147018479 147018776 -37269886 + AluJo SINE Alu 3 301 -11 1192 267 122 48 chr4 147018776 147018989 -37269673 - L2 LINE L2 -240 3073 2804 249 319 133 0 chr4 147018989 147019124 -37269538 - MIR SINE MIR -82 180 28 1401 113 21 0 chr4 147019124 147019318 -37269344 - AluSc SINE Alu -5 304 107 229 269 67 42 chr4 147019683 147019802 -37268860 + LTR67 LTR ERVL 354 475 -82 662 214 48 52 chr4 147019933 147020127 -37268535 + LTR37A LTR ERV1 43 286 -182 1327 159 148 4 chr4 147020127 147020384 -37268278 - AluJb SINE Alu -17 295 2 662 214 48 52 chr4 147020384 147020507 -37268155 + LTR37A LTR ERV1 286 408 -60 469 211 31 57 chr4 147020509 147020703 -37267959 + LTR37A LTR ERV1 234 422 -4 2767 160 2 20 chr4 147020704 147021227 -37267435 + L1PB4 LINE L1 5662 6156 0 308 293 132 0 chr4 147021345 147021451 -37267211 + MIR SINE MIR 34 153 -55 1800 126 138 84 chr4 147021469 147021510 -37267152 - MSTA LTR MaLR 0 428 391 2394 109 0 0 chr4 147021510 147021821 -37266841 + AluSq SINE Alu 1 311 -2 1800 126 138 84 chr4 147021821 147022185 -37266477 - MSTA LTR MaLR -37 391 1 239 0 32 0 chr4 147022405 147022436 -37266226 + (CA)n Simple_repeat Simple_repeat 2 33 0 952 217 132 24 chr4 147022775 147023070 -37265592 + MLT1A1 LTR MaLR 1 327 -38 1843 194 2 28 chr4 147023172 147023347 -37265315 - MLT1-int LTR MaLR -696 675 497 2073 143 0 0 chr4 147023347 147023627 -37265035 - AluSx SINE Alu -32 280 1 1843 194 2 28 chr4 147023627 147023878 -37264784 - MLT1-int LTR MaLR -874 497 260 600 171 0 0 chr4 147023869 147023980 -37264682 - MLT1-int LTR MaLR -1620 115 5 * 1982 171 67 99 chr4 147023984 147024521 -37264141 - MLT2B1 LTR ERVL 0 520 1 1158 145 137 4 chr4 147024766 147025028 -37263634 - L1MB5 LINE L1 -8 6166 5870 472 243 130 45 chr4 147026427 147026674 -37261988 - MARNA DNA Mariner -14 572 305 533 256 30 24 chr4 147026714 147026878 -37261784 - MARNA DNA Mariner -353 233 69 208 240 29 19 chr4 147027128 147027232 -37261430 + (TAAA)n Simple_repeat Simple_repeat 4 108 0 189 0 0 0 chr4 147027431 147027452 -37261210 + (TG)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr4 147029129 147029151 -37259511 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr4 147029228 147029254 -37259408 + AT_rich Low_complexity Low_complexity 1 26 0 1485 135 26 56 chr4 147029711 147030015 -37258647 - AluJb SINE Alu -17 295 1 548 271 59 18 chr4 147030319 147030489 -37258173 - MIR SINE MIR -52 210 34 1086 218 132 24 chr4 147030798 147030932 -37257730 - Charlie4a DNA MER1_type -1453 508 390 2039 115 31 0 chr4 147030932 147031053 -37257609 + AluSx SINE Alu 1 117 -195 243 0 0 0 chr4 147031053 147031080 -37257582 + (CA)n Simple_repeat Simple_repeat 2 28 0 2039 115 31 0 chr4 147031080 147031246 -37257416 + AluSx SINE Alu 117 297 -15 1086 218 132 24 chr4 147031246 147031537 -37257125 - Charlie4a DNA MER1_type -1571 390 37 4947 89 35 15 chr4 147031867 147032667 -37255995 + L1PB1 LINE L1 5236 6052 -99 387 41 0 0 chr4 147033425 147033474 -37255188 + (CA)n Simple_repeat Simple_repeat 2 50 0 24 0 0 0 chr4 147033965 147033989 -37254673 + AT_rich Low_complexity Low_complexity 1 24 0 204 182 0 0 chr4 147034842 147034886 -37253776 + (ATG)n Simple_repeat Simple_repeat 2 45 0 294 333 84 56 chr4 147035278 147035563 -37253099 + L2 LINE L2 2927 3219 -53 201 121 0 0 chr4 147036541 147036574 -37252088 + (TG)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr4 147036973 147036994 -37251668 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 147037123 147037146 -37251516 + AT_rich Low_complexity Low_complexity 1 23 0 979 251 141 15 chr4 147037498 147037889 -37250773 - L2 LINE L2 -56 3257 2818 570 167 74 0 chr4 147037936 147038044 -37250618 + MER94 DNA DNA 4 119 -15 434 230 0 10 chr4 147038061 147038161 -37250501 - L2 LINE L2 -528 2786 2688 490 152 25 0 chr4 147038161 147038240 -37250422 + BC200 scRNA scRNA 1 81 -119 605 277 60 0 chr4 147038367 147038551 -37250111 - MIR SINE MIR -67 195 1 1561 208 85 27 chr4 147039734 147040214 -37248448 - L1ME3A LINE L1 -1 6169 5662 897 150 0 0 chr4 147040451 147040584 -37248078 - FLAM_C SINE Alu 0 133 1 2407 51 3 3 chr4 147040866 147041158 -37247504 - AluY SINE Alu -19 292 1 1179 149 99 0 chr4 147041733 147041934 -37246728 + MER58A DNA MER1_type 1 221 -3 701 217 16 0 chr4 147042061 147042190 -37246472 - AluJb SINE Alu -179 133 3 1788 202 0 0 chr4 147042336 147042643 -37246019 - AluJo SINE Alu -5 307 1 2369 114 0 0 chr4 147043085 147043392 -37245270 - AluSx SINE Alu -5 307 1 1563 161 24 4 chr4 147043723 147043977 -37244685 + AluJb SINE Alu 1 259 -53 1247 285 121 3 chr4 147044697 147045290 -37243372 - L1MC4a LINE L1 -1644 6164 5502 27 0 0 0 chr4 147046941 147046968 -37241694 + AT_rich Low_complexity Low_complexity 1 27 0 3082 175 29 16 chr4 147047032 147047762 -37240900 - Charlie1 DNA MER1_type 0 2761 2023 363 188 20 30 chr4 147047763 147047864 -37240798 - Charlie1 DNA MER1_type -1095 1666 1567 1460 141 80 100 chr4 147047878 147047960 -37240702 + L1MC/D LINE L1 5120 5202 -1157 2002 147 0 13 chr4 147047960 147048266 -37240396 + AluJb SINE Alu 1 302 -10 1460 141 80 100 chr4 147048266 147048616 -37240046 + L1MC/D LINE L1 5202 5558 -801 2180 131 0 6 chr4 147048616 147048930 -37239732 - AluSp SINE Alu -1 312 1 1977 149 0 3 chr4 147048935 147049237 -37239425 - AluY SINE Alu -10 301 1 1460 141 80 100 chr4 147049237 147049281 -37239381 + L1MC/D LINE L1 5562 5624 -735 230 259 0 86 chr4 147050223 147050304 -37238358 - MIR3 SINE MIR -14 194 121 207 194 0 0 chr4 147050970 147051006 -37237656 + T-rich Low_complexity Low_complexity 2 37 0 412 213 90 8 chr4 147051833 147051955 -37236707 - MIR SINE MIR -6 256 125 459 283 17 44 chr4 147052257 147052437 -37236225 - MIR SINE MIR -81 181 7 371 318 16 57 chr4 147053379 147053571 -37235091 - MIR SINE MIR -56 206 23 2302 125 0 0 chr4 147053736 147054049 -37234613 - AluSq SINE Alu 0 313 1 1145 149 11 5 chr4 147054152 147054340 -37234322 + MER5A DNA MER1_type 1 189 0 664 225 6 77 chr4 147054354 147054456 -37234206 - MER5B DNA MER1_type -6 172 87 994 141 17 98 chr4 147054456 147054690 -37233972 - MER20 DNA MER1_type -4 215 1 664 225 6 77 chr4 147054690 147054769 -37233893 - MER5B DNA MER1_type -91 87 4 221 286 0 0 chr4 147055800 147055849 -37232813 - L2 LINE L2 -19 3294 3246 249 33 0 0 chr4 147055986 147056016 -37232646 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 316 187 37 45 chr4 147058788 147058922 -37229740 + (TTATA)n Simple_repeat Simple_repeat 5 137 0 1357 187 0 5 chr4 147060250 147060464 -37228198 + AluJo SINE Alu 1 213 -99 23 86 0 0 chr4 147060499 147060557 -37228105 + AT_rich Low_complexity Low_complexity 1 58 0 313 169 0 34 chr4 147061149 147061208 -37227454 - Alu SINE Alu -6 296 240 543 286 147 13 chr4 147061459 147061532 -37227130 - MIR SINE MIR -1 261 199 1889 149 3 20 chr4 147061532 147061834 -37226828 + AluSx SINE Alu 1 297 -15 543 286 147 13 chr4 147061834 147061984 -37226678 - MIR SINE MIR -63 199 8 5449 108 18 74 chr4 147062008 147062756 -37225906 - MER4D LTR ERV1 0 903 219 2565 62 0 0 chr4 147062756 147063065 -37225597 - AluY SINE Alu -2 309 1 5449 108 18 74 chr4 147063065 147063273 -37225389 - MER4D LTR ERV1 -684 219 1 217 109 43 0 chr4 147063789 147063835 -37224827 + A-rich Low_complexity Low_complexity 3 50 0 29 0 0 0 chr4 147064173 147064202 -37224460 + AT_rich Low_complexity Low_complexity 1 29 0 769 220 148 3 chr4 147065514 147065747 -37222915 - MLT1H1 LTR MaLR -28 527 283 320 272 170 20 chr4 147065778 147065925 -37222737 - MLT1H1 LTR MaLR -386 169 1 1360 151 77 53 chr4 147065950 147066235 -37222427 + AluJo SINE Alu 1 292 -10 339 318 91 20 chr4 147066472 147066670 -37221992 + L1ME LINE L1 5606 5817 -304 23 33 0 0 chr4 147067014 147067044 -37221618 + AT_rich Low_complexity Low_complexity 1 30 0 1973 258 106 53 chr4 147067516 147067621 -37221041 - L2 LINE L2 -5 3308 3210 1621 153 87 3 chr4 147067621 147067909 -37220753 - AluJb SINE Alu 0 312 1 1973 258 106 53 chr4 147067909 147068876 -37219786 - L2 LINE L2 -103 3210 1986 2314 69 0 39 chr4 147071000 147071306 -37217356 + AluY SINE Alu 1 294 -17 2489 56 0 44 chr4 147071306 147071626 -37217036 + AluY SINE Alu 1 306 -5 348 24 0 0 chr4 147072261 147072302 -37216360 + (TG)n Simple_repeat Simple_repeat 2 42 0 401 312 70 25 chr4 147073048 147073247 -37215415 + L3 LINE CR1 1361 1568 -9 260 213 16 0 chr4 147073692 147073753 -37214909 + Charlie4a DNA MER1_type 26 87 -421 1085 168 6 0 chr4 147073853 147074026 -37214636 + AluSg/x SINE Alu 129 302 -8 587 171 7 64 chr4 147074170 147074310 -37214352 + MLT1E2 LTR MaLR 1 132 -373 836 136 0 0 chr4 147074310 147074420 -37214242 + FLAM_C SINE Alu 1 110 -33 1240 243 99 38 chr4 147074458 147074900 -37213762 + MLT1E2 LTR MaLR 123 619 -7 370 339 58 0 chr4 147076354 147076475 -37212187 + MER119 DNA MER1_type 1 128 -455 622 184 24 0 chr4 147076483 147076608 -37212054 + MER119 DNA MER1_type 456 583 0 260 146 21 0 chr4 147077039 147077087 -37211575 - MER58B DNA MER1_type 0 341 293 2336 141 34 5 chr4 147077124 147077570 -37211092 + L1MB4 LINE L1 5657 6115 -65 1768 165 48 23 chr4 147078178 147078615 -37210047 + Charlie4a DNA MER1_type 60 507 -1 264 379 45 61 chr4 147080008 147080433 -37208229 - L2 LINE L2 -22 3250 2833 419 247 200 7 chr4 147080580 147080730 -37207932 + MIR SINE MIR 78 256 -6 225 262 107 0 chr4 147080913 147080997 -37207665 + MIR SINE MIR 105 197 -65 32 57 0 0 chr4 147081281 147081334 -37207328 + AT_rich Low_complexity Low_complexity 1 53 0 303 243 10 29 chr4 147081750 147081853 -37206809 - MLT1J LTR MaLR -2 509 409 1696 59 68 0 chr4 147084605 147084825 -37203837 + AluY SINE Alu 75 309 -2 559 251 204 14 chr4 147085128 147085339 -37203323 + MIR SINE MIR 12 262 0 317 240 233 42 chr4 147085674 147085839 -37202823 + MIR3 SINE MIR 2 195 -47 605 219 85 37 chr4 147088863 147089027 -37199635 - L2 LINE L2 -1 3312 3141 1118 286 58 11 chr4 147089039 147089402 -37199260 + L2 LINE L2 2275 2654 -660 1821 158 9 17 chr4 147089805 147090154 -37198508 - L1MC2 LINE L1 -11 6333 5988 1839 163 0 40 chr4 147091579 147091904 -37196758 - AluJb SINE Alu 0 312 1 2218 128 0 0 chr4 147092287 147092591 -37196071 + AluSx SINE Alu 1 304 -8 2250 126 42 20 chr4 147092808 147093164 -37195498 + THE1B LTR MaLR 1 364 0 315 361 63 11 chr4 147093170 147093361 -37195301 - L1ME LINE L1 -409 5753 5553 3102 206 19 16 chr4 147193535 147194223 -37094439 + L1P LINE L1 1942 2631 -3515 182 128 0 77 chr4 147194356 147194395 -37094267 - L2 LINE L2 -2 3311 3276 408 306 60 49 chr4 147194900 147195083 -37093579 - L2 LINE L2 0 3272 3088 891 266 65 9 chr4 147195286 147195500 -37093162 + MIR SINE MIR 16 241 -21 24 0 0 0 chr4 147196432 147196456 -37092206 + AT_rich Low_complexity Low_complexity 1 24 0 553 44 0 0 chr4 147197473 147197541 -37091121 - MLT2A2 LTR ERVL -385 68 1 490 277 147 4 chr4 147197546 147197777 -37090885 - L2 LINE L2 -896 2418 2155 1769 169 33 22 chr4 147197789 147198150 -37090512 - MLT1A1 LTR MaLR 0 365 1 273 378 7 34 chr4 147198330 147198478 -37090184 + L2 LINE L2 2918 3061 -211 7778 174 12 6 chr4 147198835 147200580 -37088082 - L1PA13 LINE L1 -4 6159 4397 225 65 0 0 chr4 147200580 147200611 -37088051 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 7778 174 12 6 chr4 147200611 147201160 -37087502 - L1PA13 LINE L1 -1766 4397 3853 2314 97 0 0 chr4 147201371 147201670 -37086992 - AluSg SINE Alu -7 303 5 186 411 11 0 chr4 147201807 147201897 -37086765 + L2 LINE L2 3208 3298 -15 21 0 0 0 chr4 147202583 147202604 -37086058 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 147202657 147202682 -37085980 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 147202735 147202757 -37085905 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 147202872 147202893 -37085769 + AT_rich Low_complexity Low_complexity 1 21 0 884 226 131 13 chr4 147203466 147203771 -37084891 - MER113 DNA MER1_type? -95 426 86 23 54 0 0 chr4 147205995 147206032 -37082630 + AT_rich Low_complexity Low_complexity 1 37 0 1048 172 35 10 chr4 147206405 147206608 -37082054 + MER3 DNA MER1_type 1 208 -1 840 181 0 0 chr4 147207459 147207586 -37081076 + FLAM_C SINE Alu 1 127 -16 2175 107 0 3 chr4 147207662 147207960 -37080702 + AluSg SINE Alu 7 303 -7 1024 191 0 26 chr4 147208191 147208380 -37080282 + AluJb SINE Alu 82 265 -47 1673 178 0 27 chr4 147208951 147209266 -37079396 + AluJb SINE Alu 1 307 0 23 33 0 0 chr4 147209814 147209844 -37078818 + AT_rich Low_complexity Low_complexity 1 30 0 524 274 23 81 chr4 147210454 147210713 -37077949 - L2 LINE L2 -8 3305 3062 321 302 0 10 chr4 147210998 147211094 -37077568 + L1M4 LINE L1 4930 5024 -1122 239 300 0 0 chr4 147211367 147211467 -37077195 + L1M4 LINE L1 4930 5029 -1117 2869 0 0 6 chr4 147211469 147211782 -37076880 + AluYa5 SINE Alu 1 311 0 1509 188 3 13 chr4 147211912 147212226 -37076436 + AluYa5 SINE Alu 1 311 0 400 191 79 32 chr4 147212238 147212364 -37076298 + L1M4 LINE L1 5016 5147 -999 22 0 0 0 chr4 147213262 147213284 -37075378 + AT_rich Low_complexity Low_complexity 1 22 0 3468 203 67 16 chr4 147213795 147214979 -37073683 + L1ME1 LINE L1 4922 6161 -5 2267 84 3 0 chr4 147214979 147215266 -37073396 + AluY SINE Alu 3 290 -21 1880 137 4 4 chr4 147216042 147216348 -37072314 + AluSx SINE Alu 15 320 0 219 204 0 0 chr4 147216462 147216506 -37072156 + L2 LINE L2 3168 3211 -61 248 132 0 0 chr4 147216740 147216778 -37071884 - L2 LINE L2 -4 3309 3272 245 261 15 0 chr4 147216838 147216903 -37071759 - L2 LINE L2 -48 3224 3159 1018 208 14 23 chr4 147217098 147217319 -37071343 + MER20 DNA MER1_type 1 219 0 1723 193 113 24 chr4 147217385 147217809 -37070853 + MLT1C LTR MaLR 6 467 0 408 66 91 8 chr4 147217914 147218035 -37070627 + (TA)n Simple_repeat Simple_repeat 1 131 0 183 153 63 18 chr4 147218060 147218171 -37070491 + (TATAA)n Simple_repeat Simple_repeat 4 119 0 194 274 0 39 chr4 147218207 147218258 -37070404 - L2 LINE L2 -50 3263 3215 1094 171 119 107 chr4 147222647 147223048 -37065614 - MLT1D LTR MaLR 0 505 100 834 143 16 66 chr4 147223048 147223230 -37065432 - Tigger7 DNA MER2_type 0 2491 2319 4620 114 76 80 chr4 147223230 147223513 -37065149 - Tigger3(Golem) DNA MER2_type 0 3029 2746 669 217 0 23 chr4 147223513 147223642 -37065020 + FLAM_A SINE Alu 1 126 -7 4620 114 76 80 chr4 147223642 147224322 -37064340 - Tigger3(Golem) DNA MER2_type -283 2746 2070 387 272 0 0 chr4 147224321 147224402 -37064260 - Tigger3(Golem) DNA MER2_type -2882 147 67 * 1065 140 18 12 chr4 147224403 147224567 -37064095 - FRAM SINE Alu -11 165 1 7698 62 4 0 chr4 147224694 147225651 -37063011 + HERVL-A2 LTR ERVL 4694 5654 0 2998 105 11 31 chr4 147225652 147226101 -37062561 + MLT2A2 LTR ERVL 12 451 -2 331 43 106 0 chr4 147226135 147226182 -37062480 - MADE1 DNA Mariner -1 79 28 238 287 69 11 chr4 147226186 147226273 -37062389 + L2 LINE L2 2726 2817 -497 2211 168 53 55 chr4 147226350 147226519 -37062143 + MLT1D LTR MaLR 1 169 -336 1898 168 49 55 chr4 147226519 147226989 -37061673 - MLT1C LTR MaLR 0 467 1 2211 168 53 55 chr4 147226989 147227325 -37061337 + MLT1D LTR MaLR 169 505 0 395 312 7 78 chr4 147227325 147227479 -37061183 + L2 LINE L2 2907 3049 -264 1276 223 49 37 chr4 147227486 147227836 -37060826 + MLT1A1 LTR MaLR 12 365 0 383 267 226 9 chr4 147227836 147228057 -37060605 + L2 LINE L2 3045 3313 0 252 351 80 11 chr4 147228315 147228577 -37060085 + L2 LINE L2 2197 2476 -838 18918 37 6 0 chr4 147228764 147231855 -37056807 - L1PA4 LINE L1 -1 6154 3048 31944 78 6 8 chr4 147231855 147236056 -37052606 - HERVE LTR ERV1 -3621 4192 1 990 156 5 16 chr4 147236056 147236242 -37052420 - LTR2 LTR ERV1 0 449 266 361 282 68 49 chr4 147236998 147237161 -37051501 + MIR3 SINE MIR 15 180 -28 26 101 0 0 chr4 147237373 147237462 -37051200 + AT_rich Low_complexity Low_complexity 1 89 0 275 303 161 12 chr4 147238111 147238273 -37050389 - MIR SINE MIR -54 208 23 22 0 0 0 chr4 147238554 147238576 -37050086 + AT_rich Low_complexity Low_complexity 1 22 0 3599 210 74 35 chr4 147238699 147240650 -37048012 - L1ME1 LINE L1 -15 6151 4123 333 237 48 59 chr4 147240655 147240841 -37047821 - MER95 LTR ERV -2 429 246 2507 249 51 13 chr4 147241069 147241899 -37046763 - L1ME1 LINE L1 -2026 4120 3260 1173 178 32 22 chr4 147241908 147241991 -37046671 + MER58B DNA MER1_type 1 82 -2338 2001 61 36 7 chr4 147241991 147242271 -37046391 + L1MA2 LINE L1 6017 6304 0 1173 178 32 22 chr4 147242271 147242503 -37046159 + MER58B DNA MER1_type 82 303 -38 2013 254 142 25 chr4 147242527 147243177 -37045485 + MER21B LTR ERV1 13 738 -125 574 191 12 12 chr4 147243235 147243403 -37045259 - L1ME1 LINE L1 -2906 3240 3073 668 252 19 0 chr4 147243421 147243576 -37045086 - MER63 DNA MER1_type -277 785 2 249 372 76 0 chr4 147243722 147243867 -37044795 + L3b LINE CR1 1422 1577 -6 365 328 109 11 chr4 147245008 147245191 -37043471 + MIR3 SINE MIR 3 203 -5 223 189 14 14 chr4 147246455 147246529 -37042133 + (TA)n Simple_repeat Simple_repeat 1 74 0 398 228 65 16 chr4 147247451 147247574 -37041088 - MLT1L LTR MaLR -21 594 466 241 246 88 0 chr4 147247686 147247743 -37040919 - MLT1J LTR MaLR -322 189 128 2356 123 17 180 chr4 147247780 147248436 -37040226 - L1 LINE L1 -2155 3991 3443 277 285 39 15 chr4 147248440 147248570 -37040092 - L1M4 LINE L1 -1016 5130 4998 309 289 53 53 chr4 147249064 147249139 -37039523 - L1MEd LINE L1 -5902 217 143 1810 157 29 35 chr4 147249139 147249484 -37039178 + MER2 DNA MER2_type 1 343 -1 309 289 53 53 chr4 147249484 147249560 -37039102 - L1MEd LINE L1 -5975 144 66 183 42 0 0 chr4 147249900 147249924 -37038738 + (TTG)n Simple_repeat Simple_repeat 3 26 0 502 246 64 54 chr4 147251115 147251318 -37037344 + L3 LINE CR1 1218 1422 -155 36 33 0 16 chr4 147251340 147251380 -37037282 + AT_rich Low_complexity Low_complexity 1 41 -19 2405 34 0 7 chr4 147251380 147251674 -37036988 - L1PA4 LINE L1 -3 6152 5861 36 33 0 16 chr4 147251674 147251694 -37036968 + AT_rich Low_complexity Low_complexity 41 60 0 996 130 7 26 chr4 147252200 147252354 -37036308 + AluJo SINE Alu 1 151 -161 316 200 0 0 chr4 147252373 147252423 -37036239 + 5S rRNA rRNA 1 50 -71 28 48 0 0 chr4 147252426 147252468 -37036194 + AT_rich Low_complexity Low_complexity 1 42 0 438 20 0 0 chr4 147252801 147252852 -37035810 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 2219 127 3 0 chr4 147252990 147253297 -37035365 - AluSx SINE Alu -4 308 1 241 321 91 53 chr4 147253432 147253459 -37035203 - L2 LINE L2 -213 3059 3034 1595 197 95 128 chr4 147253459 147253676 -37034986 + LTR1B LTR ERV1 1 224 -602 252 0 0 0 chr4 147253676 147253704 -37034958 + (CA)n Simple_repeat Simple_repeat 1 28 0 1595 197 95 128 chr4 147253704 147254340 -37034322 + LTR1B LTR ERV1 224 826 0 241 321 91 53 chr4 147254340 147254521 -37034141 - L2 LINE L2 -238 3034 2843 183 42 0 0 chr4 147257340 147257364 -37031298 + (TA)n Simple_repeat Simple_repeat 1 24 0 207 295 162 19 chr4 147258673 147258778 -37029884 - L2 LINE L2 -233 3039 2920 855 244 73 44 chr4 147258977 147259252 -37029410 - MLT1J LTR MaLR 0 511 229 292 87 0 0 chr4 147259260 147259331 -37029331 + Alu SINE Alu 247 312 0 483 264 159 11 chr4 147259353 147259535 -37029127 - MLT1J LTR MaLR -290 221 13 22 0 0 0 chr4 147259693 147259715 -37028947 + AT_rich Low_complexity Low_complexity 1 22 0 213 324 56 0 chr4 147259791 147259862 -37028800 + MIR SINE MIR 7 81 -181 3801 150 7 8 chr4 147260680 147261382 -37027280 + L1M1 LINE L1 2219 2919 -4646 6555 182 40 20 chr4 147261386 147263318 -37025344 + L1M1 LINE L1 3063 5037 -2528 2083 182 31 22 chr4 147263321 147263776 -37024886 + L1MA4 LINE L1 5835 6293 -7 258 308 51 34 chr4 147264579 147264671 -37023991 + MIR SINE MIR 33 129 -133 2095 128 6 46 chr4 147264671 147265022 -37023640 + MER1B DNA MER1_type 1 337 0 258 308 51 34 chr4 147265022 147265046 -37023616 + MIR SINE MIR 129 151 -111 857 221 113 0 chr4 147265046 147265268 -37023394 - MER46C DNA MER2_type 0 338 92 194 308 0 0 chr4 147265353 147265405 -37023257 + MIR SINE MIR 159 210 -52 221 0 35 0 chr4 147265852 147265881 -37022781 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 1033 164 19 42 chr4 147266141 147266355 -37022307 + MER3 DNA MER1_type 1 209 0 1031 231 21 16 chr4 147268003 147268245 -37020417 + MIR SINE MIR 20 262 0 22 0 0 0 chr4 147269561 147269583 -37019079 + AT_rich Low_complexity Low_complexity 1 22 0 231 327 96 19 chr4 147269868 147269972 -37018690 - L2 LINE L2 -10 3262 3151 180 328 90 37 chr4 147270032 147270166 -37018496 + MIR SINE MIR 31 171 -91 454 324 84 22 chr4 147270428 147270653 -37018009 + MIR SINE MIR 3 241 -21 263 268 49 120 chr4 147270904 147271344 -37017318 - MER5A DNA MER1_type -22 167 36 1835 187 0 0 chr4 147271023 147271322 -37017340 + AluJb SINE Alu 1 299 -13 260 297 42 103 chr4 147271322 147271368 -37017294 + MER5A DNA MER1_type 142 189 0 1899 166 0 3 chr4 147272039 147272340 -37016322 + AluJo SINE Alu 1 300 -12 570 250 28 50 chr4 147272509 147272689 -37015973 - MER5B DNA MER1_type -2 176 1 246 328 35 70 chr4 147272718 147272947 -37015715 - L2 LINE L2 -706 2608 2388 * 585 299 120 0 chr4 147272941 147273125 -37015537 + MIR SINE MIR 47 252 -10 2041 139 7 0 chr4 147273157 147273445 -37015217 + AluSx SINE Alu 1 290 -22 441 36 0 0 chr4 147273445 147273466 -37015196 + (CA)n Simple_repeat Simple_repeat 1 76 0 441 36 0 0 chr4 147273466 147273521 -37015141 + (CA)n Simple_repeat Simple_repeat 2 56 0 2261 121 0 0 chr4 147273785 147274092 -37014570 + AluSx SINE Alu 6 312 0 407 278 60 0 chr4 147274221 147274354 -37014308 + L2 LINE L2 2934 3074 -239 308 299 55 75 chr4 147274457 147274658 -37014004 + MLT1L LTR MaLR 222 418 -197 1250 168 5 14 chr4 147274661 147274875 -37013787 + AluSx SINE Alu 1 212 -100 264 30 0 0 chr4 147274899 147274932 -37013730 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 258 242 81 0 chr4 147274934 147274996 -37013666 + MLT1L LTR MaLR 413 479 -136 1328 176 18 21 chr4 147275736 147276027 -37012635 + L1ME1 LINE L1 5879 6158 -8 329 329 38 67 chr4 147276446 147276666 -37011996 - MIR SINE MIR -50 212 2 379 237 178 35 chr4 147276875 147277044 -37011618 - MIR SINE MIR -25 237 45 1994 120 17 21 chr4 147277238 147277529 -37011133 - AluSx SINE Alu -22 290 1 21 0 0 0 chr4 147277787 147277808 -37010854 + AT_rich Low_complexity Low_complexity 1 21 0 511 309 80 5 chr4 147279196 147279397 -37009265 + L2 LINE L2 3098 3313 0 2100 129 3 0 chr4 147280837 147281131 -37007531 + AluSx SINE Alu 2 296 -16 333 355 0 0 chr4 147281673 147281780 -37006882 + MIR SINE MIR 48 154 -108 264 253 84 78 chr4 147281773 147281927 -37006735 - MIR SINE MIR 0 262 108 * 186 340 0 0 chr4 147282452 147282499 -37006163 + L2 LINE L2 3202 3248 -24 27 29 0 0 chr4 147282767 147282801 -37005861 + AT_rich Low_complexity Low_complexity 1 34 0 790 273 85 36 chr4 147283094 147283601 -37005061 + L2 LINE L2 2733 3312 -1 592 340 66 12 chr4 147283604 147283863 -37004799 - L2 LINE L2 -410 2904 2632 330 26 0 0 chr4 147284408 147284447 -37004215 + (ATG)n Simple_repeat Simple_repeat 2 40 0 4212 171 97 2 chr4 147285017 147285804 -37002858 - MER21B LTR ERV1 -2 861 1 2155 128 0 0 chr4 147285953 147286249 -37002413 + AluSx SINE Alu 1 296 -16 563 255 16 22 chr4 147286884 147287068 -37001594 + L1MC5 LINE L1 7744 7926 -35 1726 182 0 7 chr4 147287142 147287439 -37001223 + AluJo SINE Alu 1 295 -17 212 221 87 58 chr4 147287492 147287596 -37001066 - MIR SINE MIR 0 262 156 364 261 8 104 chr4 147288057 147288191 -37000471 - L2 LINE L2 0 3313 3193 1756 176 0 17 chr4 147290445 147290741 -36997921 - AluJo SINE Alu -11 301 11 2118 129 3 0 chr4 147290778 147291089 -36997573 + AluSx SINE Alu 1 312 0 2480 65 0 10 chr4 147291505 147291814 -36996848 + AluY SINE Alu 1 306 -5 1648 188 6 13 chr4 147291925 147292239 -36996423 - AluJb SINE Alu 0 312 1 243 283 115 26 chr4 147292436 147292549 -36996113 - MIR3 SINE MIR -46 162 40 535 108 0 0 chr4 147292998 147293072 -36995590 + Alu SINE Alu 222 295 -15 21 0 0 0 chr4 147293397 147293418 -36995244 + AT_rich Low_complexity Low_complexity 1 21 0 200 118 0 29 chr4 147293533 147293567 -36995095 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 278 318 49 76 chr4 147293662 147293885 -36994777 - MIR SINE MIR -24 238 22 222 360 7 43 chr4 147294313 147294452 -36994210 - L2 LINE L2 -1355 1959 1826 225 282 161 24 chr4 147294828 147294952 -36993710 - MIR3 SINE MIR -62 146 6 429 81 0 0 chr4 147295338 147295400 -36993262 + (CA)n Simple_repeat Simple_repeat 2 63 0 1606 224 127 12 chr4 147295851 147296447 -36992215 + MER39 LTR ERV1 1 704 -3 221 286 0 16 chr4 147296634 147296697 -36991965 - MER5B DNA MER1_type -45 133 72 2379 89 0 0 chr4 147297688 147297991 -36990671 - AluSx SINE Alu -9 303 1 22 35 0 0 chr4 147298678 147298707 -36989955 + AT_rich Low_complexity Low_complexity 1 29 0 3867 251 63 26 chr4 147299693 147300918 -36987744 + L2 LINE L2 1103 2372 -942 711 247 82 96 chr4 147300920 147301321 -36987341 + MLT1I LTR MaLR 1 408 -1 736 175 147 0 chr4 147301322 147301499 -36987163 + L2 LINE L2 2372 2574 -740 1577 170 35 35 chr4 147301499 147301944 -36986718 + L1ME1 LINE L1 5164 5609 -743 1638 203 67 74 chr4 147302058 147302625 -36986037 + L1ME1 LINE L1 5599 6161 -5 2432 79 0 0 chr4 147303811 147304115 -36984547 + AluY SINE Alu 1 304 -7 2270 158 43 9 chr4 147304691 147305110 -36983552 + Tigger2a DNA MER2_type 1 433 -1 591 229 54 36 chr4 147305371 147305537 -36983125 - MIR SINE MIR -16 246 78 660 134 10 0 chr4 147305746 147305843 -36982819 + AluSg/x SINE Alu 196 293 -19 285 100 0 0 chr4 147306305 147306355 -36982307 + (TTTTTG)n Simple_repeat Simple_repeat 1 50 0 723 139 38 0 chr4 147306508 147306716 -36981946 - L1MA9 LINE L1 -1 6311 6047 2420 84 0 3 chr4 147306853 147307161 -36981501 + AluSc SINE Alu 1 307 -2 1022 328 114 12 chr4 147308047 147308635 -36980027 + L2 LINE L2 2330 2977 -337 259 295 26 0 chr4 147308801 147308879 -36979783 + L2 LINE L2 3234 3313 0 266 333 34 34 chr4 147308934 147309051 -36979611 - MIR SINE MIR -112 150 34 1939 112 10 17 chr4 147309836 147310132 -36978530 - AluSc SINE Alu -15 294 1 410 300 39 0 chr4 147310511 147310641 -36978021 - MIR SINE MIR -10 252 118 22 35 0 0 chr4 147311465 147311494 -36977168 + AT_rich Low_complexity Low_complexity 1 29 0 2194 109 0 0 chr4 147311543 147311837 -36976825 - AluSq SINE Alu -17 296 3 730 269 75 7 chr4 147311841 147312123 -36976539 + L1ME4a LINE L1 5526 5826 -295 235 333 22 22 chr4 147312119 147312209 -36976453 + L1MC4a LINE L1 5494 5583 -538 * 183 200 0 0 chr4 147312212 147312247 -36976415 - L2 LINE L2 0 3272 3238 878 284 41 9 chr4 147312258 147312578 -36976084 + L1MC4a LINE L1 5572 5901 -1907 26 50 0 0 chr4 147312810 147312850 -36975812 + AT_rich Low_complexity Low_complexity 1 40 0 650 171 0 0 chr4 147315271 147315376 -36973286 + FRAM SINE Alu 59 163 -13 329 258 213 30 chr4 147315394 147315430 -36973232 + L1ME4a LINE L1 5677 5705 -416 1873 166 6 10 chr4 147315430 147315743 -36972919 - AluJo SINE Alu 0 312 1 329 258 213 30 chr4 147315743 147316039 -36972623 + L1ME4a LINE L1 5705 6070 -51 21 36 0 0 chr4 147316066 147316094 -36972568 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr4 147317128 147317171 -36971491 + AT_rich Low_complexity Low_complexity 1 43 0 206 388 10 0 chr4 147317297 147317395 -36971267 + L3 LINE CR1 1471 1569 -8 486 316 139 8 chr4 147318260 147318468 -36970194 - MIR SINE MIR 0 262 18 369 43 0 0 chr4 147319072 147319119 -36969543 + (CA)n Simple_repeat Simple_repeat 2 48 0 2110 146 10 0 chr4 147319166 147319475 -36969187 - AluSx SINE Alu 0 312 1 413 294 167 15 chr4 147319662 147319866 -36968796 + MIR SINE MIR 28 262 0 207 0 0 0 chr4 147320047 147320070 -36968592 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 2168 110 28 0 chr4 147320086 147320376 -36968286 - AluSx SINE Alu -14 298 1 1652 149 7 25 chr4 147321267 147321548 -36967114 - AluJb SINE Alu -36 276 1 362 151 14 0 chr4 147321959 147322032 -36966630 + (TA)n Simple_repeat Simple_repeat 2 75 0 212 265 12 48 chr4 147322471 147322554 -36966108 - MIR SINE MIR 0 262 183 1130 160 0 21 chr4 147322648 147322746 -36965916 - MER46A DNA MER2_type 0 236 143 358 217 225 25 chr4 147322746 147322866 -36965796 + MER46A DNA MER2_type 3 146 -90 363 276 104 22 chr4 147323345 147323479 -36965183 - MIR SINE MIR -111 151 7 21 36 0 0 chr4 147326314 147326342 -36962320 + AT_rich Low_complexity Low_complexity 1 28 0 183 162 0 0 chr4 147328092 147328129 -36960533 + (TG)n Simple_repeat Simple_repeat 2 38 0 1460 154 19 19 chr4 147331099 147331366 -36957296 + L1MB3 LINE L1 5866 6132 -51 973 262 109 24 chr4 147331980 147332403 -36956259 - MLT1J LTR MaLR -41 470 12 761 255 0 19 chr4 147332403 147332611 -36956051 + L1M2a LINE L1 4 207 -6961 4950 244 45 26 chr4 147332617 147333014 -36955648 + L1M2a LINE L1 746 1134 -6033 189 0 0 0 chr4 147333014 147333035 -36955627 + (CTG)n Simple_repeat Simple_repeat 3 23 0 4950 244 45 26 chr4 147333035 147335681 -36952981 + L1M2a LINE L1 1134 3579 -3588 1648 183 7 14 chr4 147335681 147335970 -36952692 + AluJo SINE Alu 1 287 -25 4950 244 45 26 chr4 147335970 147336040 -36952622 + L1M2a LINE L1 3579 3646 -3521 795 228 9 40 chr4 147336053 147336277 -36952385 + L1MA9 LINE L1 5887 6103 -209 206 207 12 73 chr4 147337463 147337545 -36951117 + A-rich Low_complexity Low_complexity 5 81 0 216 293 35 0 chr4 147339248 147339306 -36949356 + MIR SINE MIR 82 141 -67 580 185 0 75 chr4 147339375 147339521 -36949141 + FLAM_C SINE Alu 1 135 -8 1437 207 34 24 chr4 147339526 147339821 -36948841 + AluJb SINE Alu 4 301 -11 2451 193 51 10 chr4 147340120 147340607 -36948055 - MER21B LTR ERV1 -30 833 327 432 262 39 0 chr4 147340589 147340692 -36947970 - MER21B LTR ERV1 -712 151 45 * 1878 168 196 72 chr4 147340701 147341065 -36947597 + LTR1B LTR ERV1 1 319 -466 4537 73 3 3 chr4 147341065 147341656 -36947006 - LTR10C LTR ERV1 0 591 1 1878 168 196 72 chr4 147341656 147341991 -36946671 + LTR1B LTR ERV1 319 785 0 315 198 36 81 chr4 147342047 147342158 -36946504 - MER21B LTR ERV1 -757 106 1 400 272 97 0 chr4 147342167 147342270 -36946392 + L2 LINE L2 3196 3308 -5 189 0 0 0 chr4 147344369 147344390 -36944272 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 318 50 0 0 chr4 147344389 147344429 -36944233 + (TG)n Simple_repeat Simple_repeat 1 40 0 190 329 0 53 chr4 147344988 147345064 -36943598 - L2 LINE L2 -8 3305 3234 868 161 93 6 chr4 147345472 147345634 -36943028 - MER69A DNA AcHobo -1 176 1 302 268 22 87 chr4 147346815 147346953 -36941709 + L2 LINE L2 3176 3304 -9 454 266 193 29 chr4 147347613 147347707 -36940955 - MIR SINE MIR 0 262 185 2037 128 12 99 chr4 147347707 147348120 -36940542 + MER51B LTR ERV1 1 377 0 454 266 193 29 chr4 147348120 147348232 -36940430 - MIR SINE MIR -77 185 22 258 269 13 13 chr4 147348258 147348336 -36940326 - MIR SINE MIR 0 262 185 516 313 7 21 chr4 147348338 147348498 -36940164 + MIR3 SINE MIR 15 173 -35 624 152 10 10 chr4 147349125 147349224 -36939438 + MSTB LTR MaLR 1 99 -327 342 48 0 0 chr4 147349736 147349778 -36938884 + MADE1 DNA Mariner 1 42 -38 383 292 103 11 chr4 147349808 147349993 -36938669 - L1ME LINE L1 -699 5463 5262 24 0 0 0 chr4 147350008 147350032 -36938630 + AT_rich Low_complexity Low_complexity 1 24 0 4549 137 36 1 chr4 147350040 147350770 -36937892 - L1PA16 LINE L1 -13 6153 5399 361 204 0 78 chr4 147350786 147350889 -36937773 - L1MC4 LINE L1 -11 8031 7937 293 401 68 39 chr4 147351075 147351382 -36937280 + L2 LINE L2 2937 3252 -20 561 195 25 17 chr4 147351499 147351617 -36937045 + MLT1A2 LTR MaLR 42 160 -205 7312 186 34 10 chr4 147351622 147352909 -36935753 + L1PB4 LINE L1 3711 5044 -1102 2184 107 7 3 chr4 147352909 147353217 -36935445 + AluY SINE Alu 1 309 -2 7312 186 34 10 chr4 147353217 147353473 -36935189 + L1PB4 LINE L1 5044 5292 -854 1693 149 49 0 chr4 147353473 147353758 -36934904 + L1PB4 LINE L1 5855 6156 0 697 226 31 53 chr4 147353766 147353992 -36934670 + MLT1A2 LTR MaLR 154 374 0 536 246 74 53 chr4 147354155 147354399 -36934263 + MIR SINE MIR 3 256 -6 1791 173 0 22 chr4 147354780 147355098 -36933564 + AluJb SINE Alu 1 311 -1 195 220 0 0 chr4 147356859 147356909 -36931753 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 644 328 58 23 chr4 147357155 147357492 -36931170 + L2 LINE L2 2670 3030 -283 815 159 0 60 chr4 147357497 147357648 -36931014 + AluJb SINE Alu 163 304 -8 688 272 48 32 chr4 147357657 147357907 -36930755 - MIR SINE MIR -16 246 2 243 278 113 60 chr4 147357916 147358049 -36930613 + L2 LINE L2 3174 3313 0 1825 143 4 11 chr4 147358810 147359089 -36929573 - AluSx SINE Alu -35 277 1 1380 188 0 65 chr4 147359514 147359838 -36928824 + AluJo SINE Alu 1 303 -9 200 211 0 0 chr4 147362711 147362749 -36925913 + (CATA)n Simple_repeat Simple_repeat 3 40 0 2136 307 78 52 chr4 147363288 147364841 -36923821 - L2 LINE L2 -1 3312 1730 209 256 0 0 chr4 147364970 147365013 -36923649 - L2 LINE L2 -15 3257 3215 182 197 105 40 chr4 147366060 147366136 -36922526 - MIR SINE MIR -129 133 53 253 94 0 0 chr4 147366465 147366497 -36922165 - L1MC4 LINE L1 -158 7884 7853 * 1295 212 66 3 chr4 147366495 147366797 -36921865 - L1MC4 LINE L1 -1235 6807 6487 350 237 68 111 chr4 147367093 147367300 -36921362 - HAL1 LINE L1 -883 1624 1427 735 262 101 4 chr4 147367302 147367539 -36921123 + MIR SINE MIR 1 260 -2 450 303 81 30 chr4 147367699 147367996 -36920666 - L1MEd LINE L1 -5545 574 263 380 297 102 57 chr4 147368117 147368363 -36920299 + MIR SINE MIR 6 262 0 353 288 125 38 chr4 147368387 147368458 -36920204 - L1MC4 LINE L1 -2211 5597 5534 1369 183 64 17 chr4 147368458 147368753 -36919909 - AluJo SINE Alu -3 309 1 353 288 125 38 chr4 147368753 147368910 -36919752 - L1MC4 LINE L1 -2274 5534 5332 360 0 0 0 chr4 147368910 147368950 -36919712 + (TG)n Simple_repeat Simple_repeat 1 40 0 353 288 125 38 chr4 147368950 147369033 -36919629 - L1MC4 LINE L1 -2476 5332 5258 878 128 15 0 chr4 147369070 147369203 -36919459 - AluJo SINE Alu -177 135 1 2214 114 0 0 chr4 147371131 147371429 -36917233 + AluSx SINE Alu 1 298 -14 1527 183 45 12 chr4 147371642 147371976 -36916686 - L1MA10 LINE L1 -4 6330 5986 280 234 39 13 chr4 147372091 147372168 -36916494 + MLT1L LTR MaLR 1 79 -536 1179 121 16 11 chr4 147472311 147472493 -36816169 + AluSg/x SINE Alu 116 298 -11 727 233 52 6 chr4 147472574 147472746 -36815916 + MLT1A1 LTR MaLR 186 365 0 26 0 0 0 chr4 147472901 147472927 -36815735 + AT_rich Low_complexity Low_complexity 1 26 0 457 103 243 75 chr4 147473071 147473178 -36815484 + MER44D DNA MER2_type 29 423 -186 1309 146 5 0 chr4 147473189 147473381 -36815281 - AluSq SINE Alu -22 291 99 2365 90 0 7 chr4 147473724 147474024 -36814638 - AluSx SINE Alu -14 298 1 2234 132 6 0 chr4 147474167 147474494 -36814168 + L1PA15 LINE L1 5837 6165 0 2305 104 0 3 chr4 147474963 147475270 -36813392 + AluSx SINE Alu 1 306 -6 2515 64 0 0 chr4 147475633 147475931 -36812731 - AluY SINE Alu -13 298 1 1732 179 0 10 chr4 147475992 147476289 -36812373 - AluJo SINE Alu -18 294 1 343 247 199 24 chr4 147476479 147476645 -36812017 - L1MC4 LINE L1 -147 7895 7701 1361 216 26 4 chr4 147476655 147476924 -36811738 + AluJo SINE Alu 1 275 -37 2732 209 99 52 chr4 147476950 147477245 -36811417 - L1MC4 LINE L1 -377 7665 7385 1573 45 6 0 chr4 147477245 147477423 -36811239 + L1PA8 LINE L1 5977 6155 -17 180 0 0 0 chr4 147477423 147477443 -36811219 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 2732 209 99 52 chr4 147477443 147477456 -36811206 - L1MC4 LINE L1 -657 7385 7374 2298 77 3 22 chr4 147477456 147477767 -36810895 + AluSq SINE Alu 1 305 -8 2732 209 99 52 chr4 147477767 147478300 -36810362 - L1MC4 LINE L1 -668 7374 6782 2280 100 3 10 chr4 147478506 147478816 -36809846 - AluSq SINE Alu -5 308 1 444 307 0 0 chr4 147478867 147478981 -36809681 - MER81 DNA DNA 0 114 1 265 308 33 33 chr4 147479054 147479174 -36809488 + MIR SINE MIR 37 156 -106 1845 160 10 7 chr4 147479287 147479593 -36809069 + AluJb SINE Alu 6 312 0 1950 220 118 81 chr4 147480086 147480444 -36808218 + L1ME3A LINE L1 5081 5424 -746 2547 69 0 0 chr4 147480444 147480749 -36807913 + AluY SINE Alu 1 305 -6 1950 220 118 81 chr4 147480749 147481449 -36807213 + L1ME3A LINE L1 5424 6166 -4 1966 162 10 3 chr4 147481454 147481762 -36806900 + AluJo SINE Alu 1 310 -2 2145 90 7 0 chr4 147481980 147482258 -36806404 - AluSx SINE Alu -32 280 1 12318 52 2 13 chr4 147482386 147484233 -36804429 + L1PA5 LINE L1 3934 5772 -382 2569 59 3 0 chr4 147484233 147484536 -36804126 + AluY SINE Alu 1 304 -7 12318 52 2 13 chr4 147484536 147484915 -36803747 + L1PA5 LINE L1 5772 6154 0 1482 186 43 25 chr4 147484960 147485240 -36803422 + AluJo SINE Alu 1 285 -27 2391 82 3 7 chr4 147485454 147485759 -36802903 - AluY SINE Alu -7 304 1 1763 148 3 35 chr4 147486132 147486442 -36802220 + AluSx SINE Alu 1 300 -12 1728 186 3 13 chr4 147486549 147486860 -36801802 - AluJo SINE Alu 0 312 5 479 306 8 8 chr4 147486918 147487042 -36801620 - MER5B DNA MER1_type -5 173 50 1767 128 0 4 chr4 147487069 147487312 -36801350 + AluSx SINE Alu 7 248 -64 250 61 0 0 chr4 147487458 147487491 -36801171 + Alu SINE Alu 262 294 -8 1554 144 92 69 chr4 147488011 147488371 -36800291 - THE1C LTR MaLR -7 368 1 201 317 130 37 chr4 147488419 147488580 -36800082 + L2 LINE L2 3124 3299 -14 475 243 96 72 chr4 147488690 147488715 -36799947 - L2 LINE L2 -824 2490 2467 2333 112 0 3 chr4 147488715 147489028 -36799634 + AluSq SINE Alu 1 312 -1 475 243 96 72 chr4 147489028 147489139 -36799523 - L2 LINE L2 -847 2467 2360 2812 142 116 0 chr4 147489139 147489435 -36799227 - LTR44 LTR ERV1 0 519 148 2059 133 0 3 chr4 147489435 147489735 -36798927 + AluSx SINE Alu 1 299 -13 2812 142 116 0 chr4 147489735 147489903 -36798759 - LTR44 LTR ERV1 -371 148 1 475 243 96 72 chr4 147489903 147490016 -36798646 - L2 LINE L2 -954 2360 2234 1562 206 30 0 chr4 147490021 147490317 -36798345 - AluJb SINE Alu -7 305 1 882 155 61 0 chr4 147490633 147490781 -36797881 - Tigger7 DNA MER2_type -1 2486 2330 2054 141 0 0 chr4 147490786 147491069 -36797593 + AluSx SINE Alu 1 283 -29 533 286 36 0 chr4 147491290 147491458 -36797204 - L1ME LINE L1 -336 5785 5612 2125 124 0 0 chr4 147491562 147491876 -36796786 - AluSx SINE Alu 0 314 1 2218 119 0 0 chr4 147491888 147492207 -36796455 - AluSq SINE Alu 0 319 1 2298 101 0 3 chr4 147492210 147492516 -36796146 - AluSx SINE Alu -7 305 1 2349 232 48 18 chr4 147492550 147493180 -36795482 - L2 LINE L2 -556 2758 2110 383 224 14 98 chr4 147493177 147493320 -36795342 - MIR SINE MIR -20 242 112 * 2614 253 101 25 chr4 147493320 147494205 -36794457 - Charlie2a DNA MER1_type -1910 952 1 2378 76 0 17 chr4 147494767 147495068 -36793594 + AluSg SINE Alu 1 296 -14 186 279 0 0 chr4 147495093 147495136 -36793526 + L3 LINE CR1 327 369 -1208 617 258 43 118 chr4 147495204 147495396 -36793266 - L1ME4a LINE L1 -223 5898 5693 716 207 6 71 chr4 147495396 147495565 -36793097 + FAM SINE Alu 1 158 -17 617 258 43 118 chr4 147495565 147495578 -36793084 - L1ME4a LINE L1 -428 5693 5681 1955 126 29 0 chr4 147495578 147495855 -36792807 - AluJb SINE Alu -14 298 14 617 258 43 118 chr4 147495855 147496090 -36792572 - L1ME4a LINE L1 -440 5681 5490 1076 121 12 0 chr4 147496122 147496288 -36792374 - L1MB4 LINE L1 0 6180 6013 373 258 21 0 chr4 147496393 147496490 -36792172 - MLT1I LTR MaLR 0 409 311 445 136 0 0 chr4 147496601 147496660 -36792002 - AluSq SINE Alu -110 203 145 419 214 29 19 chr4 147496660 147496763 -36791899 + LTR24B LTR ERV1 466 569 -7 342 88 0 53 chr4 147496840 147496897 -36791765 - AluJo SINE Alu -166 136 83 660 140 0 0 chr4 147496924 147497017 -36791645 + AluJ/FLAM SINE Alu 2 94 -218 2298 104 7 0 chr4 147497045 147497342 -36791320 + AluSx SINE Alu 1 299 -13 4333 118 33 47 chr4 147497342 147498072 -36790590 - Tigger1 DNA MER2_type -109 2309 1590 1812 134 0 0 chr4 147498078 147498325 -36790337 - AluSx SINE Alu -65 247 1 2445 69 0 0 chr4 147498410 147498713 -36789949 - AluY SINE Alu -8 303 1 415 252 61 27 chr4 147499101 147499248 -36789414 - MER20B DNA MER1_type -618 165 14 306 0 0 0 chr4 147499518 147499552 -36789110 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4461 97 11 27 chr4 147499709 147500168 -36788494 + MER41B LTR ERV1 1 466 -169 1758 154 0 14 chr4 147500168 147500448 -36788214 + AluSx SINE Alu 1 276 -36 645 80 0 0 chr4 147500448 147500536 -36788126 + (GA)n Simple_repeat Simple_repeat 1 88 0 4461 97 11 27 chr4 147500536 147500713 -36787949 + MER41B LTR ERV1 464 628 -7 259 128 64 0 chr4 147501251 147501298 -36787364 - MSTC LTR MaLR 0 428 379 2518 56 10 0 chr4 147501329 147501635 -36787027 - AluY SINE Alu -2 309 1 1396 139 32 36 chr4 147501662 147501913 -36786749 - MSTC LTR MaLR -178 250 1 2035 95 74 24 chr4 147501998 147502294 -36786368 - AluSp SINE Alu -2 311 1 1473 66 6 6 chr4 147503178 147503359 -36785303 + AluSp SINE Alu 1 181 -132 377 219 26 171 chr4 147503510 147503738 -36784924 - MLT1I LTR MaLR -56 353 159 2043 126 0 0 chr4 147503770 147504077 -36784585 + AluY SINE Alu 4 311 0 4094 219 57 27 chr4 147504259 147505321 -36783341 + L1ME LINE L1 207 1300 -5242 2327 82 0 13 chr4 147505355 147505659 -36783003 + AluY SINE Alu 1 300 -11 2203 99 0 0 chr4 147505663 147505970 -36782692 + AluSq SINE Alu 1 307 0 2013 113 20 20 chr4 147505979 147506281 -36782381 + AluSx SINE Alu 1 302 -10 2074 234 37 2 chr4 147506288 147506835 -36781827 + L1ME LINE L1 2707 3272 -3372 973 128 0 0 chr4 147506837 147506970 -36781692 + AluSq/x SINE Alu 1 133 -179 2115 119 3 7 chr4 147506972 147507265 -36781397 + AluSc SINE Alu 1 292 -17 1105 243 60 49 chr4 147507306 147507790 -36780872 + L1ME LINE L1 3527 4019 -2625 1538 194 10 42 chr4 147507790 147508100 -36780562 + AluJo SINE Alu 1 300 -12 1105 243 60 49 chr4 147508100 147508163 -36780499 + L1ME LINE L1 4019 4080 -2564 1576 127 0 4 chr4 147508226 147508454 -36780208 + AluSc SINE Alu 82 308 -1 1329 282 84 20 chr4 147508473 147508924 -36779738 + L1M2c LINE L1 162 641 -6148 2228 103 10 0 chr4 147508994 147509285 -36779377 + AluSx SINE Alu 1 294 -18 227 222 0 16 chr4 147509287 147509350 -36779312 + L1MA6 LINE L1 5959 6020 -280 1433 198 10 26 chr4 147509365 147509678 -36778984 + L1MA6 LINE L1 5988 6295 -5 5645 218 34 32 chr4 147509687 147510705 -36777957 + L1ME LINE L1 4068 5082 -1562 1631 136 26 33 chr4 147510705 147511007 -36777655 + AluSx SINE Alu 1 300 -12 5645 218 34 32 chr4 147511007 147511246 -36777416 + L1ME LINE L1 5082 5319 -1325 2119 152 0 0 chr4 147511246 147511556 -36777106 - AluJb SINE Alu -2 310 1 5645 218 34 32 chr4 147511556 147511569 -36777093 + L1ME LINE L1 5319 5330 -1314 2561 53 3 0 chr4 147511569 147511869 -36776793 - AluY SINE Alu -10 301 1 5645 218 34 32 chr4 147511869 147512107 -36776555 + L1ME LINE L1 5330 5582 -1062 858 196 18 6 chr4 147512107 147512270 -36776392 - L1MC1 LINE L1 0 6333 6169 184 30 61 0 chr4 147512274 147512307 -36776355 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 320 261 101 70 chr4 147512430 147512687 -36775975 + LTR24B LTR ERV1 207 471 -105 1715 128 0 31 chr4 147512698 147512955 -36775707 - AluSq SINE Alu -53 260 12 444 313 80 7 chr4 147513061 147513354 -36775308 - L1MC1 LINE L1 -393 5728 5405 291 276 89 42 chr4 147513588 147513802 -36774860 - L1MC1 LINE L1 -1179 4967 4744 198 0 0 0 chr4 147514009 147514031 -36774631 + (A)n Simple_repeat Simple_repeat 1 22 0 571 279 33 6 chr4 147514307 147514490 -36774172 + L1ME LINE L1 6056 6243 -376 1726 123 69 108 chr4 147515329 147515719 -36772943 + THE1C LTR MaLR 1 375 0 2315 92 0 0 chr4 147515990 147516284 -36772378 + AluY SINE Alu 1 294 -17 1308 177 87 43 chr4 147516292 147516569 -36772093 + AluJo SINE Alu 1 289 -23 811 149 0 15 chr4 147516759 147516893 -36771769 + AluSq/x SINE Alu 1 132 -180 2328 67 3 3 chr4 147517344 147517665 -36770997 - AluSp SINE Alu 0 321 1 185 333 0 0 chr4 147518712 147518754 -36769908 + L2 LINE L2 3137 3178 -94 1055 177 6 0 chr4 147519085 147519266 -36769396 + MLT1B LTR MaLR 197 378 -12 217 300 12 25 chr4 147519554 147519634 -36769028 + MIR3 SINE MIR 128 206 -2 208 226 48 0 chr4 147519856 147519918 -36768744 - MIR SINE MIR -112 150 86 34 24 0 0 chr4 147519957 147519998 -36768664 + AT_rich Low_complexity Low_complexity 1 41 0 241 219 0 31 chr4 147521716 147521780 -36766882 - MER5C DNA MER1_type 0 324 263 231 114 0 0 chr4 147521782 147521817 -36766845 - HY1 scRNA scRNA -1 111 77 391 293 69 0 chr4 147521980 147522096 -36766566 - MER5C DNA MER1_type -200 124 1 2509 70 3 0 chr4 147522167 147522467 -36766195 - AluSp SINE Alu -12 301 1 2950 186 35 11 chr4 147524388 147524925 -36763737 + MER68 LTR ERV1 11 560 -2 951 207 114 96 chr4 147524929 147525051 -36763611 + LTR41 LTR ERVL 7 125 -648 1528 169 3 49 chr4 147525051 147525359 -36763303 + AluJb SINE Alu 1 294 -18 2091 116 0 7 chr4 147525367 147525660 -36763002 + AluSx SINE Alu 1 291 -21 951 207 114 96 chr4 147525660 147526170 -36762492 + LTR41 LTR ERVL 131 750 -23 388 281 151 32 chr4 147526588 147526873 -36761789 + L2 LINE L2 2032 2350 -964 205 347 48 7 chr4 147527122 147527269 -36761393 + L2 LINE L2 2532 2684 -630 2126 123 10 0 chr4 147527406 147527699 -36760963 + AluSx SINE Alu 1 296 -16 207 295 66 49 chr4 147527864 147527906 -36760756 - MIR SINE MIR -25 237 197 2110 125 0 13 chr4 147527906 147528074 -36760588 - AluSg SINE Alu -11 299 135 2428 73 13 0 chr4 147528074 147528377 -36760285 - AluSp SINE Alu -6 307 1 2110 125 0 13 chr4 147528377 147528511 -36760151 - AluSg SINE Alu -175 135 1 207 295 66 49 chr4 147528511 147528590 -36760072 - MIR SINE MIR -65 197 114 846 127 0 45 chr4 147528740 147528874 -36759788 + MER20B DNA MER1_type 91 218 -1 725 310 153 3 chr4 147529136 147529462 -36759200 - L2 LINE L2 -482 2832 2458 234 62 0 0 chr4 147529622 147529654 -36759008 + (T)n Simple_repeat Simple_repeat 1 32 0 339 306 62 17 chr4 147530482 147530660 -36758002 - MIR SINE MIR -50 212 28 2017 142 7 0 chr4 147531103 147531452 -36757210 - AluSx SINE Alu 0 351 1 1473 46 0 0 chr4 147531580 147531755 -36756907 + L1P LINE L1 3934 4108 -2038 2215 87 0 23 chr4 147531937 147532237 -36756425 + AluSg SINE Alu 1 293 -17 1607 170 42 7 chr4 147533867 147534150 -36754512 - AluJb SINE Alu -19 293 1 823 176 67 94 chr4 147534168 147534435 -36754227 - L1MA10 LINE L1 -51 6283 6024 231 268 73 0 chr4 147534532 147534614 -36754048 + MLT1K LTR MaLR 145 232 -356 1002 157 152 5 chr4 147534752 147534943 -36753719 - MER20 DNA MER1_type 0 219 1 2152 88 46 0 chr4 147536150 147536434 -36752228 + AluSq SINE Alu 2 298 -15 2263 92 0 0 chr4 147536437 147536720 -36751942 + AluSc SINE Alu 1 283 -26 2097 104 3 14 chr4 147536751 147537048 -36751614 + AluSg SINE Alu 1 294 -16 2395 53 0 0 chr4 147537048 147537355 -36751307 + AluY SINE Alu 1 307 0 430 206 0 0 chr4 147537421 147537494 -36751168 + 5S rRNA rRNA 1 73 -48 599 330 157 24 chr4 147537543 147538679 -36749983 + L2 LINE L2 1780 3068 -204 21 0 0 0 chr4 147538900 147538921 -36749741 + AT_rich Low_complexity Low_complexity 1 21 0 614 221 41 58 chr4 147538941 147539030 -36749632 - MIR SINE MIR -20 242 155 2236 89 3 0 chr4 147539030 147539343 -36749319 - AluSp SINE Alu 0 314 1 614 221 41 58 chr4 147539343 147539424 -36749238 - MIR SINE MIR -107 155 74 2224 94 13 10 chr4 147539508 147539815 -36748847 + AluSg SINE Alu 1 308 -2 2319 98 3 7 chr4 147540055 147540362 -36748300 + AluSq SINE Alu 2 307 -6 449 276 46 25 chr4 147540446 147540642 -36748020 - MIR SINE MIR 0 262 63 537 16 0 0 chr4 147541009 147541071 -36747591 + (TG)n Simple_repeat Simple_repeat 2 63 0 266 206 196 0 chr4 147541753 147541860 -36746802 + L1ME3A LINE L1 5819 5946 -224 259 302 47 23 chr4 147542453 147542539 -36746123 + MIR SINE MIR 28 115 -147 1622 111 0 37 chr4 147542545 147542788 -36745874 + AluSg/x SINE Alu 65 298 -14 2117 121 0 10 chr4 147542987 147543285 -36745377 - AluSx SINE Alu -17 295 1 312 310 88 12 chr4 147543296 147543467 -36745195 - MIR SINE MIR -14 248 65 2250 120 3 0 chr4 147543502 147543801 -36744861 - AluSc SINE Alu -9 300 1 1881 133 42 0 chr4 147544160 147544445 -36744217 - AluSx SINE Alu -15 297 1 221 290 14 12 chr4 147544611 147544694 -36743968 - MIR SINE MIR -68 140 69 187 259 259 17 chr4 147544814 147544872 -36743790 - MIR3 SINE MIR -19 189 118 2034 125 19 32 chr4 147544959 147545272 -36743390 - AluSx SINE Alu -3 309 1 198 221 164 67 chr4 147545640 147545744 -36742918 + L2 LINE L2 3136 3249 -23 2046 112 45 3 chr4 147546430 147546716 -36741946 + AluSq SINE Alu 1 298 -15 1177 63 0 0 chr4 147547023 147547165 -36741497 + AluSp/q SINE Alu 165 306 -7 217 132 0 0 chr4 147547397 147547435 -36741227 + (TG)n Simple_repeat Simple_repeat 2 39 0 210 71 0 0 chr4 147547749 147547777 -36740885 + (A)n Simple_repeat Simple_repeat 1 28 0 1112 166 75 5 chr4 147548090 147548277 -36740385 + Tigger7 DNA MER2_type 18 217 -2270 664 156 18 18 chr4 147548280 147548389 -36740273 + Tigger7 DNA MER2_type 2478 2586 -1 195 69 0 0 chr4 147548626 147548655 -36740007 + (GA)n Simple_repeat Simple_repeat 2 30 0 2126 108 7 10 chr4 147548809 147549114 -36739548 - AluSx SINE Alu -8 304 1 1722 96 0 0 chr4 147549679 147549897 -36738765 + AluSp SINE Alu 81 298 -15 951 136 13 7 chr4 147549962 147550117 -36738545 - L1MB8 LINE L1 -2 6176 6021 36 0 0 0 chr4 147550279 147550315 -36738347 + AT_rich Low_complexity Low_complexity 1 36 0 2053 122 20 0 chr4 147550315 147550610 -36738052 + AluSx SINE Alu 1 301 -11 252 229 33 0 chr4 147550866 147550927 -36737735 - MIR SINE MIR -109 153 91 874 122 55 118 chr4 147550972 147551050 -36737612 - MER33 DNA MER1_type -2272 313 232 896 203 0 0 chr4 147551050 147551203 -36737459 + FAM SINE Alu 5 157 -18 874 122 55 118 chr4 147551203 147551361 -36737301 - MER33 DNA MER1_type -2353 232 92 2067 127 0 3 chr4 147551377 147551668 -36736994 - AluSx SINE Alu -22 290 1 273 235 15 0 chr4 147551674 147551742 -36736920 - MER33 DNA MER1_type -224 100 32 262 302 65 86 chr4 147551825 147552057 -36736605 - MIR SINE MIR -8 254 28 1938 161 0 0 chr4 147552636 147552934 -36735728 - AluJo SINE Alu -13 299 2 2016 156 0 0 chr4 147553624 147553926 -36734736 - AluSx SINE Alu -10 302 1 2240 67 7 7 chr4 147554118 147554448 -36734214 - AluY SINE Alu 0 330 1 307 229 66 0 chr4 147554726 147554787 -36733875 - MER5B DNA MER1_type 0 178 114 2332 80 7 0 chr4 147554934 147555220 -36733442 - AluSc SINE Alu -13 296 9 198 0 0 0 chr4 147555220 147555242 -36733420 + (GCCTG)n Simple_repeat Simple_repeat 4 25 0 332 330 0 0 chr4 147555244 147555338 -36733324 - MER5B DNA MER1_type -78 100 7 1830 166 3 19 chr4 147555365 147555678 -36732984 - AluSx SINE Alu -4 308 1 190 268 0 0 chr4 147555682 147555723 -36732939 - MER5A DNA MER1_type 0 189 149 2057 139 0 3 chr4 147556152 147556453 -36732209 - AluSx SINE Alu -12 300 1 181 115 19 19 chr4 147556928 147556980 -36731682 + (TG)n Simple_repeat Simple_repeat 2 53 0 1957 158 0 0 chr4 147557136 147557434 -36731228 + AluJb SINE Alu 1 298 -14 496 163 51 20 chr4 147557523 147557621 -36731041 + MER2 DNA MER2_type 1 101 -244 1857 113 25 32 chr4 147557624 147557907 -36730755 + AluSx SINE Alu 1 281 -31 794 139 9 0 chr4 147558045 147558153 -36730509 - AluSq/x SINE Alu -203 110 2 897 191 0 0 chr4 147558214 147558361 -36730301 + FRAM SINE Alu 1 146 -30 318 26 0 0 chr4 147558364 147558403 -36730259 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 246 270 0 0 chr4 147558432 147558495 -36730167 + MER94 DNA DNA 72 134 0 2350 102 0 0 chr4 147559307 147559611 -36729051 - AluSg SINE Alu -6 304 1 2146 113 3 10 chr4 147559611 147559935 -36728727 - AluSx SINE Alu 0 312 1 303 229 149 126 chr4 147560409 147560837 -36727825 + L2 LINE L2 2857 3294 -19 2309 101 0 22 chr4 147560861 147561177 -36727485 - AluSg SINE Alu 0 310 2 2318 102 0 13 chr4 147561457 147561770 -36726892 + AluSx SINE Alu 1 309 -3 464 135 0 0 chr4 147561843 147561914 -36726748 - L1MB3 LINE L1 -52 6131 6058 724 233 149 65 chr4 147562539 147562848 -36725814 + MLT1J LTR MaLR 1 335 -176 253 176 29 108 chr4 147562878 147562980 -36725682 + MLT1J LTR MaLR 412 505 -6 552 306 112 66 chr4 147563222 147564210 -36724452 + L2 LINE L2 2292 3311 -2 381 316 52 13 chr4 147564437 147564592 -36724070 - MIR SINE MIR -50 212 52 199 253 179 32 chr4 147564650 147564745 -36723917 - L2 LINE L2 0 3313 3205 464 216 15 15 chr4 147564981 147565115 -36723547 - L1MB7 LINE L1 -3 6181 6048 807 207 0 0 chr4 147565116 147565251 -36723411 + AluJo SINE Alu 2 136 -176 2094 180 61 11 chr4 147565254 147565699 -36722963 - L1MB7 LINE L1 -131 6053 5587 207 271 14 29 chr4 147566176 147566246 -36722416 + MIR SINE MIR 190 258 -4 2078 88 46 0 chr4 147566292 147566575 -36722087 - AluSx SINE Alu -16 296 1 188 178 0 22 chr4 147567336 147567381 -36721281 + GA-rich Low_complexity Low_complexity 5 48 0 37 0 0 0 chr4 147567429 147567466 -36721196 + GC_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr4 147568104 147568139 -36720523 + GC_rich Low_complexity Low_complexity 1 35 0 197 279 33 33 chr4 147569075 147569136 -36719526 + L2 LINE L2 3244 3304 -9 269 293 116 30 chr4 147570888 147571052 -36717610 - L2 LINE L2 -421 2893 2716 306 0 0 0 chr4 147571527 147571561 -36717101 + (TG)n Simple_repeat Simple_repeat 1 34 0 245 195 0 0 chr4 147571631 147571672 -36716990 - MIR SINE MIR -130 78 38 301 151 0 19 chr4 147572107 147572160 -36716502 + MER5B DNA MER1_type 1 52 -126 322 344 37 6 chr4 147572181 147572344 -36716318 + MLT1L LTR MaLR 151 318 -297 27 29 0 0 chr4 147572532 147572566 -36716096 + AT_rich Low_complexity Low_complexity 1 34 0 1833 119 27 44 chr4 147572566 147572861 -36715801 - AluSx SINE Alu -22 290 1 493 273 29 105 chr4 147573527 147573676 -36714986 + MIR SINE MIR 3 129 -133 2266 67 0 7 chr4 147573676 147573959 -36714703 + AluY SINE Alu 1 281 -30 493 273 29 105 chr4 147573959 147574047 -36714615 + MIR SINE MIR 129 222 -40 2303 109 0 13 chr4 147574307 147574620 -36714042 + AluSx SINE Alu 1 309 -3 1603 91 23 0 chr4 147575145 147575365 -36713297 - AluSq SINE Alu -14 299 75 2038 229 32 28 chr4 147575467 147575966 -36712696 - MLT1G LTR MaLR -80 510 10 1426 176 0 0 chr4 147576565 147576792 -36711870 - MER46A DNA MER2_type -9 227 1 2271 81 0 0 chr4 147577296 147577607 -36711055 - AluY SINE Alu 0 311 1 437 308 82 11 chr4 147577902 147578084 -36710578 + MIR SINE MIR 31 225 -37 2352 74 13 0 chr4 147580302 147580601 -36708061 - AluSp SINE Alu -10 303 1 2324 93 3 0 chr4 147580628 147580930 -36707732 - AluSg SINE Alu -7 303 1 541 290 111 25 chr4 147581261 147581706 -36706956 + L2 LINE L2 2668 3169 -144 832 268 103 62 chr4 147581910 147582365 -36706297 - L2 LINE L2 -611 2703 2230 534 131 0 0 chr4 147582370 147582456 -36706206 - MLT1B LTR MaLR -4 463 301 22 35 0 0 chr4 147582949 147582978 -36705684 + AT_rich Low_complexity Low_complexity 1 29 0 1334 169 165 11 chr4 147583418 147583678 -36704984 - AluSg SINE Alu 0 300 1 1209 163 119 44 chr4 147583754 147584048 -36704614 + MER44D DNA MER2_type 24 609 0 1360 146 21 25 chr4 147584200 147584440 -36704222 - AluJo SINE Alu -15 297 59 2073 98 54 7 chr4 147584600 147584896 -36703766 + AluSx SINE Alu 1 310 -2 836 152 0 8 chr4 147585081 147585213 -36703449 - FLAM_C SINE Alu -2 131 1 25 75 0 0 chr4 147585678 147585731 -36702931 + AT_rich Low_complexity Low_complexity 1 53 0 5237 88 21 4 chr4 147587193 147587873 -36700789 - LTR8 LTR ERV1 0 691 1 244 288 100 0 chr4 147587967 147588047 -36700615 - L3 LINE CR1 -56 1521 1434 281 267 176 12 chr4 147588081 147588246 -36700416 - L2 LINE L2 -5 3308 3117 1467 186 66 38 chr4 147588300 147588666 -36699996 - MER31B LTR ERV1 -90 376 1 1639 110 94 12 chr4 147588736 147588990 -36699672 - AluSg SINE Alu -20 290 16 537 145 0 0 chr4 147588990 147589066 -36699596 + AluJo SINE Alu 59 134 -178 1016 178 89 10 chr4 147589066 147589268 -36699394 + AluJb SINE Alu 1 218 -94 306 98 0 0 chr4 147589271 147589312 -36699350 + FLAM SINE Alu 87 127 -6 1524 212 14 7 chr4 147589316 147589609 -36699053 + AluJb SINE Alu 1 295 -17 25 65 0 0 chr4 147591276 147591322 -36697340 + AT_rich Low_complexity Low_complexity 1 46 0 511 243 79 61 chr4 147591813 147592027 -36696635 + L1ME LINE L1 5605 5822 -299 381 250 73 25 chr4 147593111 147593315 -36695347 + L1ME4a LINE L1 5693 5906 -215 2009 129 27 0 chr4 147593333 147593628 -36695034 + AluSq SINE Alu 1 303 -10 310 204 43 32 chr4 147593673 147593766 -36694896 - HAL1b LINE L1 -31 1317 1224 311 254 123 8 chr4 147593908 147594038 -36694624 - L1MC/D LINE L1 -1982 5826 5682 292 299 146 36 chr4 147594471 147594661 -36694001 - MIR SINE MIR -26 236 17 1163 196 9 35 chr4 147594750 147594979 -36693683 + AluJo SINE Alu 1 223 -89 2223 85 14 14 chr4 147596164 147596457 -36692205 - AluY SINE Alu -18 293 1 254 321 101 0 chr4 147596929 147597038 -36691624 - MER112 DNA MER1_type -62 198 79 4966 170 64 27 chr4 147597158 147599081 -36689581 + L1MA9 LINE L1 4228 6203 -109 24 0 0 0 chr4 147599106 147599130 -36689532 + AT_rich Low_complexity Low_complexity 1 24 0 596 148 319 7 chr4 147600972 147601107 -36687555 + MER5B DNA MER1_type 1 177 -1 278 320 40 20 chr4 147601333 147601433 -36687229 + L2 LINE L2 94 195 -3119 1921 251 202 23 chr4 147601469 147601502 -36687160 + L2 LINE L2 2043 2069 -1244 2078 161 0 0 chr4 147601502 147601813 -36686849 - AluJb SINE Alu -1 311 1 1921 251 202 23 chr4 147601813 147602164 -36686498 + L2 LINE L2 2069 2356 -957 1586 166 32 7 chr4 147602164 147602448 -36686214 - AluJo SINE Alu -16 296 6 1921 251 202 23 chr4 147602448 147603133 -36685529 + L2 LINE L2 2356 3301 -12 1739 164 0 4 chr4 147603134 147603403 -36685259 - AluJb SINE Alu -44 268 1 2163 115 3 7 chr4 147603684 147603980 -36684682 - AluSx SINE Alu -17 295 1 1897 151 3 28 chr4 147604417 147604736 -36683926 + AluJb SINE Alu 1 311 -1 817 168 51 25 chr4 147604956 147605153 -36683509 + L1MC4 LINE L1 7197 7398 -644 1420 170 21 4 chr4 147605153 147605394 -36683268 + AluJo SINE Alu 1 245 -67 1281 206 107 43 chr4 147605394 147605788 -36682874 + L1MC4 LINE L1 7623 8041 -1 22 0 0 0 chr4 147605807 147605829 -36682833 + AT_rich Low_complexity Low_complexity 1 22 0 195 42 0 0 chr4 147605980 147606004 -36682658 + (A)n Simple_repeat Simple_repeat 1 24 0 621 259 57 35 chr4 147606769 147607051 -36681611 + L1MC4 LINE L1 7610 7897 -145 239 113 38 19 chr4 147607069 147607122 -36681540 + L1MC4 LINE L1 7986 8039 -3 716 139 0 0 chr4 147607971 147608072 -36680590 + AluJb SINE Alu 200 300 -12 1133 189 73 14 chr4 147608142 147608299 -36680363 - MER21B LTR ERV1 -108 755 566 2035 158 122 157 chr4 147608299 147608961 -36679701 + LTR8A LTR ERV1 1 635 -92 2350 97 0 0 chr4 147608961 147609250 -36679412 - AluSx SINE Alu -10 302 14 2035 158 122 157 chr4 147609250 147609340 -36679322 + LTR8A LTR ERV1 635 727 0 1133 189 73 14 chr4 147609340 147609448 -36679214 - MER21B LTR ERV1 -297 566 466 1511 146 44 22 chr4 147609549 147609824 -36678838 + MER21B LTR ERV1 405 685 -178 950 232 140 12 chr4 147610174 147610502 -36678160 - MSTD LTR MaLR -25 371 2 2334 77 0 10 chr4 147610603 147610900 -36677762 - AluSp SINE Alu -18 295 2 366 155 0 0 chr4 147610927 147610985 -36677677 + AluJ/FLAM SINE Alu 1 58 -244 3950 215 99 27 chr4 147610997 147611920 -36676742 + L1MB2 LINE L1 3855 4921 -1225 2224 96 0 3 chr4 147611920 147612213 -36676449 + AluY SINE Alu 4 295 -16 3950 215 99 27 chr4 147612213 147612734 -36675928 + L1MB2 LINE L1 4921 5403 -743 1360 185 61 21 chr4 147612743 147613073 -36675589 + L1MB2 LINE L1 5822 6164 -7 23 0 0 0 chr4 147613291 147613314 -36675348 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr4 147613380 147613405 -36675257 + AT_rich Low_complexity Low_complexity 1 25 0 517 107 0 0 chr4 147613488 147613563 -36675099 + AluSc SINE Alu 221 295 -14 649 186 0 0 chr4 147613643 147613745 -36674917 + FLAM_A SINE Alu 8 109 -33 218 157 0 20 chr4 147613751 147613802 -36674860 + (CACCC)n Simple_repeat Simple_repeat 2 51 0 1783 243 33 71 chr4 147613834 147614262 -36674400 + L1MC4 LINE L1 6353 6747 -1295 2177 93 24 3 chr4 147614262 147614551 -36674111 + AluSq SINE Alu 1 295 -18 1783 243 33 71 chr4 147614551 147614797 -36673865 + L1MC4 LINE L1 6747 7001 -1041 1848 176 3 0 chr4 147616258 147616559 -36672103 - AluJo SINE Alu -10 302 1 1299 159 108 43 chr4 147616648 147616925 -36671737 - AluJo SINE Alu -17 295 1 313 383 43 30 chr4 147617052 147617287 -36671375 - MIR SINE MIR -23 239 2 204 40 0 0 chr4 147617386 147617411 -36671251 + (TG)n Simple_repeat Simple_repeat 2 26 0 1393 171 3 89 chr4 147617411 147617587 -36671075 - AluJo SINE Alu -34 278 137 2359 104 0 0 chr4 147617587 147617896 -36670766 + AluY SINE Alu 1 309 -2 1393 171 3 89 chr4 147617896 147618023 -36670639 - AluJo SINE Alu -175 137 1 2307 85 3 3 chr4 147618340 147618647 -36670015 + AluY SINE Alu 1 307 -4 316 225 9 36 chr4 147619252 147619363 -36669299 + L1MC4a LINE L1 5793 5900 -1908 191 188 0 14 chr4 147619405 147619474 -36669188 + GA-rich Low_complexity Low_complexity 2 69 0 453 159 16 8 chr4 147620033 147620159 -36668503 + (TA)n Simple_repeat Simple_repeat 1 127 0 2097 119 6 19 chr4 147620159 147620471 -36668191 - AluSx SINE Alu -4 308 1 343 186 0 14 chr4 147620488 147620558 -36668104 - MER103 DNA DNA -93 73 5 968 196 0 0 chr4 147620904 147621062 -36667600 + FAM SINE Alu 14 171 -14 218 325 73 53 chr4 147621381 147621532 -36667130 - L2 LINE L2 -15 3257 3104 2186 131 3 0 chr4 147622053 147622359 -36666303 - AluSx SINE Alu -5 307 1 1918 110 46 18 chr4 147623572 147623853 -36664809 + AluSx SINE Alu 1 289 -23 351 269 0 0 chr4 147624005 147624083 -36664579 + MIR SINE MIR 47 124 -138 1698 130 51 7 chr4 147624107 147624400 -36664262 - MLT1B LTR MaLR 0 390 85 704 111 0 43 chr4 147624404 147624521 -36664141 + FLAM_C SINE Alu 22 133 -10 235 182 152 0 chr4 147624528 147624594 -36664068 - MLT1B LTR MaLR -307 83 8 1126 132 68 0 chr4 147624643 147624862 -36663800 - L1MA3 LINE L1 0 6305 6072 182 178 0 22 chr4 147624897 147624942 -36663720 + MIR SINE MIR 171 214 -48 2214 102 0 0 chr4 147625117 147625411 -36663251 - AluSc SINE Alu -15 294 1 1129 167 58 25 chr4 147627268 147627508 -36661154 + MIR SINE MIR 15 262 0 2178 92 3 30 chr4 147628230 147628533 -36660129 - AluSg SINE Alu -15 295 1 271 308 65 17 chr4 147628925 147629065 -36659597 + MIR SINE MIR 3 147 -61 477 236 178 58 chr4 147629147 147629355 -36659307 - MIR SINE MIR 0 262 30 2195 115 0 0 chr4 147629555 147629841 -36658821 - AluSx SINE Alu -26 286 1 2231 77 20 10 chr4 147630579 147630876 -36657786 - AluY SINE Alu -11 300 1 635 191 24 8 chr4 147632394 147632520 -36656142 - MER5A DNA MER1_type -61 128 1 234 204 0 0 chr4 147633409 147633463 -36655199 - L1ME4a LINE L1 -1 6120 6067 1675 97 61 4 chr4 147634398 147634626 -36654036 + AluSc SINE Alu 1 241 -68 571 71 24 0 chr4 147634989 147635074 -36653588 - Alu SINE Alu 0 310 224 303 83 108 6 chr4 147636200 147636357 -36652305 + (TA)n Simple_repeat Simple_repeat 1 173 0 359 190 67 43 chr4 147636369 147636716 -36651946 + (TTATA)n Simple_repeat Simple_repeat 1 355 0 201 217 17 74 chr4 147636989 147637164 -36651498 + (TTATA)n Simple_repeat Simple_repeat 5 169 0 * 205 207 32 85 chr4 147637087 147637275 -36651387 + (CATTA)n Simple_repeat Simple_repeat 2 179 0 * 407 193 43 44 chr4 147637180 147637705 -36650957 + (TTATA)n Simple_repeat Simple_repeat 1 524 0 46 33 0 0 chr4 147637705 147637765 -36650897 + AT_rich Low_complexity Low_complexity 1 60 0 312 87 100 9 chr4 147637767 147638098 -36650564 + (TA)n Simple_repeat Simple_repeat 1 361 0 * 415 139 26 38 chr4 147638092 147638360 -36650302 + (TATAA)n Simple_repeat Simple_repeat 1 264 0 25 31 0 0 chr4 147641442 147641474 -36647188 + AT_rich Low_complexity Low_complexity 1 32 0 2224 121 0 7 chr4 147641486 147641784 -36646878 + AluSg SINE Alu 1 296 -14 1728 133 65 7 chr4 147642615 147642893 -36645769 - AluSg SINE Alu -16 294 1 192 327 91 0 chr4 147642959 147643069 -36645593 - MIR3 SINE MIR -30 178 59 225 0 0 0 chr4 147643313 147643338 -36645324 + (T)n Simple_repeat Simple_repeat 1 25 0 1554 183 46 43 chr4 147643341 147643712 -36644950 - MLT1A2 LTR MaLR -2 372 1 306 200 0 17 chr4 147643894 147643954 -36644708 - L2 LINE L2 -5 3267 3209 2246 127 0 0 chr4 147644426 147644733 -36643929 - AluSx SINE Alu -5 307 1 198 167 0 0 chr4 147644842 147644878 -36643784 + (CGTG)n Simple_repeat Simple_repeat 1 36 0 230 0 33 0 chr4 147644891 147644921 -36643741 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2023 110 0 0 chr4 147644942 147645206 -36643456 - AluSq SINE Alu -49 264 1 567 267 31 85 chr4 147645228 147645677 -36642985 - L1ME LINE L1 -402 5743 5319 327 274 7 7 chr4 147646033 147646168 -36642494 - L1ME LINE L1 -5351 768 634 2047 88 50 7 chr4 147646189 147646472 -36642190 + AluSx SINE Alu 1 295 -17 483 194 0 0 chr4 147646472 147646570 -36642092 + (TG)n Simple_repeat Simple_repeat 1 98 0 29 0 0 0 chr4 147646627 147646656 -36642006 + AT_rich Low_complexity Low_complexity 1 29 0 336 294 33 66 chr4 147646869 147647080 -36641582 + L1MEd LINE L1 407 610 -5509 307 208 56 72 chr4 147647602 147647727 -36640935 - MIR SINE MIR 0 262 140 355 285 134 16 chr4 147647734 147647980 -36640682 - L1ME3A LINE L1 -8 6162 5888 299 136 91 30 chr4 147648034 147648100 -36640562 - MIR SINE MIR -112 150 81 849 209 0 0 chr4 147648410 147648563 -36640099 - FRAM SINE Alu -18 158 6 249 232 274 0 chr4 147648871 147648966 -36639696 + L2 LINE L2 3150 3270 -2 2177 117 6 28 chr4 147648997 147649314 -36639348 - AluSg SINE Alu 0 310 1 333 350 138 0 chr4 147649516 147649639 -36639023 - L2 LINE L2 -1 3271 3132 2394 84 0 7 chr4 147649836 147650146 -36638516 - AluY SINE Alu -3 308 1 212 0 0 35 chr4 147650734 147650763 -36637899 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2015 94 0 0 chr4 147650777 147651032 -36637630 - AluSc SINE Alu -54 255 1 296 133 17 0 chr4 147651197 147651257 -36637405 + (CATCC)n Simple_repeat Simple_repeat 1 61 0 655 154 0 0 chr4 147651750 147651854 -36636808 + AluJb SINE Alu 1 104 -208 940 138 0 44 chr4 147651854 147652013 -36636649 + AluSx SINE Alu 36 187 -125 522 0 0 0 chr4 147652046 147652104 -36636558 + (TC)n Simple_repeat Simple_repeat 2 59 0 324 0 0 0 chr4 147652103 147652139 -36636523 + (TA)n Simple_repeat Simple_repeat 1 36 0 * 4221 200 88 63 chr4 147652156 147652345 -36636317 - L1MDb LINE L1 -4684 1722 1539 1879 135 3 17 chr4 147652345 147652633 -36636029 - AluSx SINE Alu -1 311 28 4221 200 88 63 chr4 147652633 147654114 -36634548 - L1MDb LINE L1 -4867 1539 22 1860 162 20 0 chr4 147654130 147654427 -36634235 - AluSx SINE Alu -9 303 1 208 313 0 24 chr4 147654535 147654618 -36634044 - MIR SINE MIR -73 135 55 284 330 237 17 chr4 147655924 147656215 -36632447 - L3 LINE CR1 -156 1421 1067 2159 137 0 0 chr4 147656324 147656630 -36632032 - AluSx SINE Alu -6 306 1 3831 130 45 10 chr4 147656638 147657322 -36631340 - L1MA4 LINE L1 0 6300 5593 * 5704 92 23 3 chr4 147657316 147658919 -36629743 - L1PA15 LINE L1 -1 6164 4526 805 187 36 24 chr4 147658983 147659149 -36629513 + FRAM SINE Alu 1 162 -14 31 0 0 0 chr4 147659338 147659369 -36629293 + AT_rich Low_complexity Low_complexity 1 31 0 32 57 0 0 chr4 147659709 147659762 -36628900 + AT_rich Low_complexity Low_complexity 1 53 0 966 200 0 0 chr4 147660035 147660190 -36628472 - AluJo SINE Alu -24 288 134 184 274 184 39 chr4 147660422 147660601 -36628061 + MIR SINE MIR 16 220 -42 668 322 61 30 chr4 147661578 147661907 -36626755 - L2 LINE L2 -337 2977 2639 1624 144 81 21 chr4 147662259 147662544 -36626118 + 7SLRNA srpRNA srpRNA 10 311 -9 445 325 42 16 chr4 147662781 147662972 -36625690 - MIR SINE MIR -66 196 1 1095 173 53 9 chr4 147662976 147663202 -36625460 - MER1B DNA MER1_type 0 339 104 332 180 45 45 chr4 147663569 147663658 -36625004 - L1ME LINE L1 -686 5435 5347 469 250 70 23 chr4 147664170 147664298 -36624364 - L2 LINE L2 -1 3312 3179 506 291 60 22 chr4 147664989 147665171 -36623491 - MIR SINE MIR 0 262 74 189 0 0 0 chr4 147665943 147665964 -36622698 + (TG)n Simple_repeat Simple_repeat 2 22 0 895 143 8 0 chr4 147665964 147666090 -36622572 - AluJo SINE Alu -185 127 1 1126 134 6 12 chr4 147667187 147667359 -36621303 - AluSg/x SINE Alu -76 236 66 988 182 124 24 chr4 147667359 147667759 -36620903 - MER6 DNA MER2_type -143 722 3 398 216 26 129 chr4 147668662 147668894 -36619768 + MER102a DNA MER1_type 113 320 -10 254 253 71 40 chr4 147669591 147669690 -36618972 - MIR SINE MIR -80 128 27 2101 125 0 4 chr4 147670548 147670829 -36617833 - AluSx SINE Alu -32 280 1 989 262 55 30 chr4 147671652 147672014 -36616648 - MER21B LTR ERV1 -163 700 330 267 211 147 46 chr4 147672061 147672170 -36616492 - MER21B LTR ERV1 -646 217 98 1812 158 0 48 chr4 147672693 147673009 -36615653 - AluJo SINE Alu -11 301 1 498 271 36 24 chr4 147673609 147673775 -36614887 + CT-rich Low_complexity Low_complexity 3 170 0 2181 108 0 0 chr4 147674043 147674348 -36614314 - AluY SINE Alu -6 305 1 640 154 231 26 chr4 147674503 147674659 -36614003 - L1MC4 LINE L1 -1164 6878 6691 283 222 49 12 chr4 147674659 147674740 -36613922 + Tigger2a DNA MER2_type 1 84 -350 495 302 67 11 chr4 147674753 147674808 -36613854 - L1MC4 LINE L1 -1297 6745 6695 1937 167 87 8 chr4 147674808 147675210 -36613452 + Tigger2a DNA MER2_type 1 434 0 495 302 67 11 chr4 147675210 147675422 -36613240 - L1MC4 LINE L1 -1347 6695 6463 1847 162 10 7 chr4 147675586 147675888 -36612774 - AluJb SINE Alu -9 303 1 186 180 160 0 chr4 147676055 147676105 -36612557 - MIR SINE MIR -47 215 158 2303 64 3 0 chr4 147676449 147676731 -36611931 + AluY SINE Alu 1 283 -28 423 0 0 0 chr4 147676731 147676778 -36611884 + (CA)n Simple_repeat Simple_repeat 2 48 0 1708 106 10 58 chr4 147677345 147677656 -36611006 + AluY SINE Alu 1 296 -15 423 0 0 0 chr4 147677660 147677707 -36610955 + (CA)n Simple_repeat Simple_repeat 2 48 0 321 341 138 27 chr4 147677781 147678115 -36610547 - L2 LINE L2 -2692 622 252 597 266 29 6 chr4 147678468 147678641 -36610021 + MER45A DNA AcHobo 2 178 0 197 284 171 0 chr4 147678652 147678740 -36609922 - MIR3 SINE MIR -46 162 60 1929 124 48 33 chr4 147678762 147679093 -36609569 + MER1B DNA MER1_type 1 336 -1 1829 166 7 3 chr4 147679170 147679471 -36609191 + AluJb SINE Alu 1 302 -10 449 256 175 58 chr4 147681233 147681456 -36607206 + MIR SINE MIR 14 262 0 1032 222 18 9 chr4 147682522 147682743 -36605919 + MER58A DNA MER1_type 1 223 -1 1137 189 26 4 chr4 147683256 147683489 -36605173 + L1MB3 LINE L1 5342 5579 -601 21 0 0 0 chr4 147683638 147683659 -36605003 + AT_rich Low_complexity Low_complexity 1 21 0 2747 158 46 18 chr4 147683664 147684207 -36604455 + L1MB3 LINE L1 5596 6153 -30 7345 172 106 22 chr4 147684725 147686344 -36602318 + MER52A LTR ERV1 1 1755 0 2195 54 25 4 chr4 147686839 147687149 -36601513 - AluY SINE Alu 0 316 1 878 270 113 63 chr4 147687559 147687736 -36600926 - L2 LINE L2 -5 3308 3141 2222 124 0 3 chr4 147687736 147688050 -36600612 + AluSq SINE Alu 1 313 0 878 270 113 63 chr4 147688050 147688332 -36600330 - L2 LINE L2 -172 3141 2826 389 266 137 26 chr4 147688320 147688553 -36600109 - L2 LINE L2 -751 2563 2305 * 2058 113 4 0 chr4 147690167 147690441 -36598221 + AluSx SINE Alu 10 284 -28 1583 144 108 24 chr4 147690547 147690880 -36597782 - MER46B DNA MER2_type 0 236 1 180 0 0 0 chr4 147691606 147691626 -36597036 + (A)n Simple_repeat Simple_repeat 1 20 0 682 189 4 121 chr4 147692501 147692749 -36595913 + MER20 DNA MER1_type 1 219 0 2282 89 3 0 chr4 147692811 147693104 -36595558 - AluSx SINE Alu -17 295 2 262 181 39 20 chr4 147693168 147693375 -36595287 + (TA)n Simple_repeat Simple_repeat 1 211 0 805 229 102 21 chr4 147693794 147694785 -36593877 - L1ME LINE L1 -433 6526 5406 2627 239 140 30 chr4 147694810 147695138 -36593524 - L1ME LINE L1 -1601 5340 5050 1787 155 3 48 chr4 147695138 147695448 -36593214 + AluJo SINE Alu 1 296 -16 2627 239 140 30 chr4 147695448 147696712 -36591950 - L1ME LINE L1 -1891 5050 3572 350 245 169 0 chr4 147696764 147696948 -36591714 - L1ME LINE L1 -3728 3213 2999 34 0 0 0 chr4 147696989 147697023 -36591639 + AT_rich Low_complexity Low_complexity 1 34 0 767 176 0 0 chr4 147697027 147697152 -36591510 - FLAM_C SINE Alu -18 125 1 311 226 110 52 chr4 147697159 147697314 -36591348 - L1ME LINE L1 -4000 2941 2778 1491 94 54 0 chr4 147697617 147697820 -36590842 - AluY SINE Alu -15 296 83 348 290 96 37 chr4 147697844 147698418 -36590244 - L1ME LINE L1 -4595 2527 1760 510 97 86 21 chr4 147698464 147698557 -36590105 - THE1-int LTR MaLR -1410 170 72 542 170 87 41 chr4 147698596 147698745 -36589917 - THE1C LTR MaLR -208 167 36 800 276 54 27 chr4 147698835 147699058 -36589604 - L1ME LINE L1 -5984 439 199 342 107 0 0 chr4 147699058 147699114 -36589548 + (TG)n Simple_repeat Simple_repeat 2 57 0 800 276 54 27 chr4 147699114 147699295 -36589367 - L1ME LINE L1 -6224 199 24 193 300 0 0 chr4 147700292 147700332 -36588330 + L2 LINE L2 3249 3288 -25 234 0 0 0 chr4 147700569 147700595 -36588067 + (CAA)n Simple_repeat Simple_repeat 1 26 0 580 136 0 0 chr4 147700601 147700682 -36587980 - FLAM_C SINE Alu -27 116 36 23 0 0 0 chr4 147700774 147700797 -36587865 + AT_rich Low_complexity Low_complexity 1 23 0 422 308 73 49 chr4 147701966 147702123 -36586539 + L2 LINE L2 2621 2788 -526 1464 158 98 112 chr4 147702123 147702195 -36586467 - MSTA LTR MaLR 0 428 357 2021 108 3 46 chr4 147702195 147702502 -36586160 + AluSx SINE Alu 1 294 -18 1464 158 98 112 chr4 147702502 147702859 -36585803 - MSTA LTR MaLR -71 357 5 422 308 73 49 chr4 147702859 147702948 -36585714 + L2 LINE L2 2788 2873 -441 4645 145 44 19 chr4 147703051 147703968 -36584694 - L1MC1 LINE L1 -9 6324 5385 12804 24 1 0 chr4 147703984 147706255 -36582407 - L1PA3 LINE L1 -3 6152 3879 522 156 11 0 chr4 147706355 147706445 -36582217 + AluSp/q SINE Alu 214 304 -9 198 0 0 0 chr4 147707372 147707394 -36581268 + (TTTTTA)n Simple_repeat Simple_repeat 3 24 0 2055 116 0 34 chr4 147707398 147707718 -36580944 - AluSx SINE Alu -3 309 1 237 311 67 11 chr4 147708013 147708103 -36580559 - L2 LINE L2 -359 2955 2861 1963 133 17 0 chr4 147708140 147708440 -36580222 - AluSx SINE Alu -5 307 3 2131 142 10 0 chr4 147708440 147708749 -36579913 - AluSx SINE Alu 0 312 1 207 69 0 0 chr4 147708913 147708942 -36579720 + (GCTG)n Simple_repeat Simple_repeat 1 29 0 764 231 78 22 chr4 147708978 147709247 -36579415 - MLT1H LTR MaLR -258 291 8 625 153 24 24 chr4 147709439 147709563 -36579099 + L1MC1 LINE L1 6204 6327 -6 382 286 105 42 chr4 147709699 147709937 -36578725 + MIR SINE MIR 2 254 -8 221 281 58 58 chr4 147710954 147711075 -36577587 + MIR3 SINE MIR 40 160 -48 1916 162 3 7 chr4 147711335 147711644 -36577018 + AluSg SINE Alu 1 308 -2 2243 111 0 7 chr4 147711897 147712194 -36576468 + AluSx SINE Alu 1 295 -17 1924 143 34 45 chr4 147712334 147712713 -36575949 - THE1C LTR MaLR 0 375 1 583 228 54 33 chr4 147712713 147712897 -36575765 - MIR SINE MIR -35 227 40 2267 85 10 7 chr4 147713025 147713318 -36575344 + AluSx SINE Alu 1 294 -18 312 296 78 44 chr4 147713684 147713890 -36574772 - L2 LINE L2 -7 3306 3094 493 214 144 108 chr4 147714425 147714868 -36573794 - L1MC5 LINE L1 -30 7931 7473 2178 116 3 0 chr4 147715665 147715958 -36572704 - AluSc SINE Alu -11 298 5 214 220 80 0 chr4 147716288 147716338 -36572324 - L2 LINE L2 -9 3263 3210 248 136 51 17 chr4 147716433 147716492 -36572170 - L2 LINE L2 -212 3060 3000 2254 99 0 17 chr4 147716740 147716905 -36571757 - AluSq SINE Alu -16 297 138 2104 114 3 13 chr4 147716905 147717212 -36571450 - AluSg SINE Alu -6 304 1 2254 99 0 17 chr4 147717212 147717348 -36571314 - AluSq SINE Alu -175 138 1 392 108 0 46 chr4 147718305 147718370 -36570292 + MADE1 DNA Mariner 1 62 -18 1969 151 0 7 chr4 147718372 147718677 -36569985 - AluSx SINE Alu -7 305 3 580 177 158 19 chr4 147718838 147718996 -36569666 + MER5A DNA MER1_type 10 189 0 24 0 0 0 chr4 147720197 147720221 -36568441 + AT_rich Low_complexity Low_complexity 1 24 0 2306 116 0 0 chr4 147720228 147720529 -36568133 + AluSg SINE Alu 3 303 -7 1587 220 143 52 chr4 147720690 147721026 -36567636 + HsTC2a DNA Tc2 72 376 -1524 1819 159 55 25 chr4 147721026 147721390 -36567272 + THE1C LTR MaLR 1 375 0 1587 220 143 52 chr4 147721390 147721667 -36566995 + HsTC2a DNA Tc2 376 741 -3 649 126 53 117 chr4 147721861 147722047 -36566615 - MSTC LTR MaLR 0 428 164 1534 190 14 17 chr4 147722047 147722337 -36566325 + AluJo SINE Alu 1 289 -23 649 126 53 117 chr4 147722337 147722394 -36566268 - MSTC LTR MaLR -264 164 105 730 214 12 6 chr4 147722552 147722720 -36565942 + LTR16B LTR ERVL 294 462 -2 212 161 97 16 chr4 147722861 147722923 -36565739 - L2 LINE L2 -5 3308 3242 2235 105 20 3 chr4 147723131 147723436 -36565226 - AluSx SINE Alu -2 310 1 22 0 0 0 chr4 147723994 147724016 -36564646 + AT_rich Low_complexity Low_complexity 1 22 0 1089 277 142 51 chr4 147725123 147725629 -36563033 - LTR67 LTR ERVL -2 555 4 858 186 0 25 chr4 147726085 147726246 -36562416 + FRAM SINE Alu 1 156 -20 990 193 16 10 chr4 147726319 147726511 -36562151 - AluJb SINE Alu -33 279 87 560 61 0 12 chr4 147726847 147726929 -36561733 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 818 321 71 21 chr4 147727798 147728265 -36560397 - L3 LINE CR1 -2 1575 1086 917 275 9 0 chr4 147728712 147728934 -36559728 + MER58A DNA MER1_type 1 224 0 22 35 0 0 chr4 147729566 147729595 -36559067 + AT_rich Low_complexity Low_complexity 1 29 0 1907 137 3 14 chr4 147729712 147729996 -36558666 - AluSx SINE Alu -31 281 1 186 328 0 0 chr4 147730756 147730814 -36557848 + L2 LINE L2 1356 1413 -1901 2316 74 47 0 chr4 147731275 147731574 -36557088 - AluSp SINE Alu 0 313 1 690 315 71 57 chr4 147731703 147731956 -36556706 + L2 LINE L2 2185 2433 -880 2810 96 32 2 chr4 147731956 147732364 -36556298 - L1MA2 LINE L1 0 6304 5885 690 315 71 57 chr4 147732364 147733196 -36555466 + L2 LINE L2 2433 3273 -40 215 173 19 19 chr4 147735416 147735468 -36553194 - L2 LINE L2 -1 3312 3261 21 0 0 0 chr4 147736997 147737018 -36551644 + AT_rich Low_complexity Low_complexity 1 21 0 6462 73 12 0 chr4 147737690 147738506 -36550156 + LTR12 LTR ERV1 1 826 0 1300 148 171 16 chr4 147739016 147739273 -36549389 - AluJo SINE Alu -15 297 1 1252 131 117 5 chr4 147739721 147739927 -36548735 + AluSg/x SINE Alu 73 301 -9 285 51 0 0 chr4 147739938 147739977 -36548685 + (TA)n Simple_repeat Simple_repeat 1 39 0 1546 181 34 17 chr4 147740023 147740321 -36548341 - AluJb SINE Alu -4 308 6 1632 164 79 55 chr4 147740751 147741130 -36547532 - MLT1B LTR MaLR 0 390 3 2128 124 3 0 chr4 147741250 147741541 -36547121 + AluSx SINE Alu 2 293 -19 332 222 0 44 chr4 147741546 147741636 -36547026 - L1ME1 LINE L1 -5 6161 6076 997 193 0 0 chr4 147741729 147741895 -36546767 - FRAM SINE Alu -5 171 6 836 176 51 35 chr4 147741972 147742183 -36546479 - L1ME1 LINE L1 -239 5927 5712 1357 170 4 21 chr4 147743200 147743435 -36545227 + AluJo SINE Alu 1 231 -81 462 239 39 60 chr4 147745458 147745512 -36543150 + Charlie5 DNA MER1_type 2396 2450 -174 2505 76 0 0 chr4 147745512 147745813 -36542849 - AluY SINE Alu -10 301 1 462 239 39 60 chr4 147745813 147745992 -36542670 + Charlie5 DNA MER1_type 2450 2624 0 352 235 0 84 chr4 147746890 147746946 -36541716 - MER5B DNA MER1_type 0 178 136 1949 136 7 26 chr4 147746946 147747256 -36541406 - AluSx SINE Alu -8 304 1 352 235 0 84 chr4 147747256 147747318 -36541344 - MER5B DNA MER1_type -42 136 70 22 35 0 0 chr4 147747990 147748019 -36540643 + AT_rich Low_complexity Low_complexity 1 29 0 3779 158 69 67 chr4 147748872 147749317 -36539345 - L1MB4 LINE L1 -3 6177 5734 2477 84 3 3 chr4 147749317 147749628 -36539034 - AluSq SINE Alu -2 311 1 3779 158 69 67 chr4 147749628 147750268 -36538394 - L1MB4 LINE L1 -446 5734 5089 305 280 24 24 chr4 147754588 147754713 -36533949 - MIR SINE MIR -25 237 113 30071 106 34 55 chr4 147755253 147757298 -36531364 - L1PA7 LINE L1 -70 6399 4312 2020 126 7 23 chr4 147757298 147757607 -36531055 - AluSx SINE Alu -8 304 1 30071 106 34 55 chr4 147757607 147761796 -36526866 - L1PA7 LINE L1 -2157 4312 1 26 74 0 0 chr4 147763146 147763200 -36525462 + AT_rich Low_complexity Low_complexity 1 54 0 185 197 66 16 chr4 147765538 147765599 -36523063 - MIR SINE MIR -28 234 171 543 259 46 94 chr4 147766725 147767095 -36521567 - MLT1H LTR MaLR -5 544 119 258 329 99 31 chr4 147768106 147768328 -36520334 - MIR SINE MIR -12 250 14 1811 157 122 26 chr4 147768328 147768754 -36519908 - MLT1C LTR MaLR 0 467 1 283 283 124 9 chr4 147768800 147768913 -36519749 + MIR SINE MIR 76 201 -61 326 296 102 42 chr4 147772240 147772406 -36516256 + L2 LINE L2 2589 2744 -528 180 97 0 0 chr4 147772406 147772437 -36516225 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2146 92 0 0 chr4 147772443 147772726 -36515936 - AluSx SINE Alu -29 283 1 326 296 102 42 chr4 147772726 147772994 -36515668 + L2 LINE L2 2748 3058 -214 460 221 51 127 chr4 147773303 147773556 -36515106 + MER112 DNA MER1_type 18 251 -9 293 311 61 31 chr4 147773646 147773842 -36514820 + L2 LINE L2 2878 3079 -193 235 357 0 0 chr4 147775581 147775665 -36512997 - L1ME LINE L1 -518 5652 5569 181 232 36 54 chr4 147776756 147776812 -36511850 + L2 LINE L2 2904 2958 -356 263 314 39 0 chr4 147777286 147777388 -36511274 - MIR SINE MIR -129 133 28 210 339 0 0 chr4 147777446 147777508 -36511154 + (TG)n Simple_repeat Simple_repeat 2 63 0 656 278 99 66 chr4 147777718 147778063 -36510599 + MLT1L LTR MaLR 177 540 -75 829 167 0 0 chr4 147778063 147778195 -36510467 - FLAM_A SINE Alu -1 132 1 656 278 99 66 chr4 147778195 147778274 -36510388 + MLT1L LTR MaLR 540 615 0 189 0 0 0 chr4 147783693 147783714 -36504948 + (A)n Simple_repeat Simple_repeat 1 21 0 267 149 0 21 chr4 147783961 147784008 -36504654 + MER105 DNA DNA 1 46 -158 292 46 46 31 chr4 147784011 147784076 -36504586 + (TC)n Simple_repeat Simple_repeat 1 66 0 1062 248 115 3 chr4 147784076 147784371 -36504291 + LTR40a LTR ERVL 192 519 0 351 156 65 26 chr4 147784371 147784448 -36504214 + MER105 DNA DNA 113 192 -12 257 259 94 118 chr4 147786172 147786427 -36502235 - L2 LINE L2 -18 3254 3006 239 211 34 106 chr4 147786544 147786630 -36502032 - MIR SINE MIR -55 155 74 244 298 167 0 chr4 147787042 147787156 -36501506 + MIR SINE MIR 118 250 -12 1132 165 11 90 chr4 147787331 147787610 -36501052 + L1MD3 LINE L1 7738 7994 -1 893 174 149 20 chr4 147787886 147788081 -36500581 - MER58A DNA MER1_type -4 220 1 2095 117 3 0 chr4 147788353 147788653 -36500009 - AluSx SINE Alu -11 301 1 209 282 84 0 chr4 147789650 147789721 -36498941 - MIR SINE MIR -57 205 129 326 335 68 51 chr4 147790871 147791047 -36497615 + MIR SINE MIR 67 245 -17 180 0 0 0 chr4 147791647 147791667 -36496995 + (A)n Simple_repeat Simple_repeat 1 20 0 230 254 0 32 chr4 147791805 147791868 -36496794 + GA-rich Low_complexity Low_complexity 2 62 0 2359 79 0 0 chr4 147793389 147793694 -36494968 + AluY SINE Alu 3 307 -4 1835 137 4 0 chr4 147793893 147794171 -36494491 + AluSx SINE Alu 1 279 -33 231 200 0 0 chr4 147794176 147794231 -36494431 + C-rich Low_complexity Low_complexity 1 55 0 213 65 0 0 chr4 147794232 147794263 -36494399 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 195 348 43 26 chr4 147794467 147794582 -36494080 - L2 LINE L2 -222 3050 2934 539 289 13 0 chr4 147794756 147794905 -36493757 + MER5A DNA MER1_type 38 188 -1 2174 116 0 0 chr4 147795937 147796239 -36492423 + AluSq SINE Alu 1 302 -11 2362 74 13 0 chr4 147798291 147798600 -36490062 - AluSp SINE Alu 0 313 1 237 82 41 41 chr4 147800246 147800295 -36488367 + LTR66 LTR ERVL 390 438 -172 459 182 7 14 chr4 147800296 147800444 -36488218 + (TA)n Simple_repeat Simple_repeat 1 147 0 676 220 0 0 chr4 147800444 147800562 -36488100 - FLAM_C SINE Alu -14 119 2 262 319 85 21 chr4 147801246 147801387 -36487275 - L2 LINE L2 -1 3271 3122 249 326 22 0 chr4 147801670 147801762 -36486900 - L2 LINE L2 -508 2806 2713 597 362 30 6 chr4 147801818 147802147 -36486515 - L2 LINE L2 -826 2488 2152 2146 120 0 0 chr4 147803418 147803726 -36484936 + AluSx SINE Alu 1 308 -4 363 284 86 26 chr4 147804180 147804448 -36484214 + HAL1 LINE L1 1258 1541 -966 277 126 0 40 chr4 147804460 147804682 -36483980 + AluSq SINE Alu 1 308 0 231 228 59 20 chr4 147804700 147804801 -36483861 + L1M4c LINE L1 1578 1682 -4702 2211 102 0 7 chr4 147806203 147806507 -36482155 - AluSc SINE Alu -7 302 1 2850 91 5 0 chr4 147807348 147807721 -36480941 - THE1C LTR MaLR 0 375 1 351 0 0 0 chr4 147807954 147807993 -36480669 + (CA)n Simple_repeat Simple_repeat 2 40 0 1902 99 13 40 chr4 147809432 147809734 -36478928 + AluSq SINE Alu 1 294 -19 210 167 62 0 chr4 147810428 147810476 -36478186 + (TATG)n Simple_repeat Simple_repeat 2 52 0 453 266 166 26 chr4 147810476 147810705 -36477957 - L1ME4a LINE L1 -15 6106 5846 473 256 92 72 chr4 147810815 147811000 -36477662 + L1MC4a LINE L1 5779 5970 -1838 1464 176 50 110 chr4 147811000 147811482 -36477180 + MLT2A2 LTR ERVL 1 453 0 473 256 92 72 chr4 147811482 147811503 -36477159 + L1MC4a LINE L1 5970 5989 -1819 235 127 0 109 chr4 147811524 147811579 -36477083 + MER116 DNA Mariner 2 50 -30 356 143 16 0 chr4 147811737 147811800 -36476862 + MER116 DNA Mariner 16 79 -1 37 0 0 0 chr4 147811911 147811948 -36476714 + AT_rich Low_complexity Low_complexity 1 37 0 892 222 103 29 chr4 147812521 147812764 -36475898 + MIR SINE MIR 2 262 0 825 229 0 0 chr4 147812981 147813147 -36475515 - AluJb SINE Alu -10 302 137 521 301 77 0 chr4 147815514 147815670 -36472992 - MIR SINE MIR -18 244 77 241 250 48 24 chr4 147819984 147820068 -36468594 + Charlie8 DNA MER1_type 117 202 -2215 916 74 0 0 chr4 147821753 147821875 -36466787 + L1PA8 LINE L1 6026 6147 -25 22 0 0 0 chr4 147821934 147821956 -36466706 + AT_rich Low_complexity Low_complexity 1 22 0 288 211 0 0 chr4 147823017 147823069 -36465593 + MER5B DNA MER1_type 127 178 0 4024 94 25 18 chr4 147823145 147823752 -36464910 + L1PA10 LINE L1 5542 6152 -16 1360 167 9 0 chr4 147823905 147824138 -36464524 + MER46A DNA MER2_type 2 236 0 2291 87 0 47 chr4 147824264 147824585 -36464077 - AluSg SINE Alu 0 310 5 352 292 123 0 chr4 147824615 147824745 -36463917 + MIR SINE MIR 114 259 -3 368 317 164 0 chr4 147825063 147825271 -36463391 - MIR SINE MIR -10 252 11 291 114 0 0 chr4 147826362 147826406 -36462256 + (TA)n Simple_repeat Simple_repeat 1 44 0 386 124 206 21 chr4 147826406 147826503 -36462159 + MER21A LTR ERV1 38 152 -779 21 0 0 0 chr4 147826554 147826575 -36462087 + AT_rich Low_complexity Low_complexity 1 21 0 1109 174 25 110 chr4 147826749 147826986 -36461676 + MER39 LTR ERV1 183 499 -208 1083 133 0 52 chr4 147826987 147827160 -36461502 - AluSx SINE Alu -113 199 36 1808 152 58 44 chr4 147827161 147827524 -36461138 + MER21A LTR ERV1 545 912 -19 1681 208 3 3 chr4 147827539 147827837 -36460825 - AluJo SINE Alu -14 298 1 479 268 24 0 chr4 147828596 147828719 -36459943 - MIR3 SINE MIR -15 193 68 2274 82 0 0 chr4 147830358 147830637 -36458025 - AluY SINE Alu -16 295 17 1212 247 73 27 chr4 147832187 147832335 -36456327 + L1MC4 LINE L1 7208 7348 -694 2019 218 118 15 chr4 147832335 147832867 -36455795 + MLT1G LTR MaLR 1 587 -3 1212 247 73 27 chr4 147832867 147833156 -36455506 + L1MC4 LINE L1 7348 7665 -377 308 284 284 0 chr4 147833221 147833362 -36455300 - MER5A DNA MER1_type 0 189 9 353 228 0 71 chr4 147833374 147833501 -36455161 + L1MC4 LINE L1 7782 7899 -143 232 138 62 46 chr4 147833523 147833588 -36455074 + L1MC4 LINE L1 7969 8034 -8 180 324 44 0 chr4 147833618 147833686 -36454976 - MIR SINE MIR -88 174 104 268 306 3 24 chr4 147833737 147833845 -36454817 + MIR SINE MIR 68 175 -33 284 364 131 8 chr4 147834331 147834567 -36454095 + L3 LINE CR1 242 506 -1071 239 213 49 0 chr4 147834567 147834628 -36454034 - Charlie1b DNA MER1_type 0 523 460 2140 133 3 3 chr4 147834628 147834936 -36453726 + AluSx SINE Alu 1 308 -4 993 160 215 18 chr4 147834972 147835354 -36453308 - Charlie1b DNA MER1_type -60 463 7 976 198 9 23 chr4 147835450 147835667 -36452995 - MER20 DNA MER1_type -3 216 3 648 327 135 49 chr4 147835751 147836485 -36452177 + L3 LINE CR1 696 1492 -85 245 273 45 0 chr4 147837530 147837618 -36451044 - MLT1G LTR MaLR -44 546 455 557 281 80 43 chr4 147837732 147838106 -36450556 - MLT1G LTR MaLR -191 399 12 695 181 0 24 chr4 147838631 147838758 -36449904 - FLAM_C SINE Alu -8 125 2 536 232 32 50 chr4 147838820 147838989 -36449673 - L2 LINE L2 -2 3311 2852 1131 188 25 141 chr4 147839084 147839527 -36449135 - MLT1E LTR MaLR 0 626 200 225 246 53 0 chr4 147839562 147839619 -36449043 - MLT1E LTR MaLR -460 133 74 349 221 78 73 chr4 147839734 147839859 -36448803 - L1MC/D LINE L1 -2071 5737 5609 661 185 67 0 chr4 147839859 147839978 -36448684 - FLAM_A SINE Alu -6 127 1 349 221 78 73 chr4 147839978 147840056 -36448606 - L1MC/D LINE L1 -2199 5609 5533 22718 46 7 1 chr4 147840174 147843186 -36445476 + L1P LINE L1 2175 5204 -942 4009 174 43 41 chr4 147843536 147844325 -36444337 - L1MB8 LINE L1 -6 6172 5367 2338 103 0 0 chr4 147844325 147844627 -36444035 - AluSx SINE Alu -10 302 1 4009 174 43 41 chr4 147844627 147844770 -36443892 - L1MB8 LINE L1 -811 5367 5226 410 274 0 0 chr4 147845016 147845111 -36443551 + MLT1J LTR MaLR 116 210 -301 384 248 8 34 chr4 147845211 147845328 -36443334 + MLT1J LTR MaLR 386 499 -12 2155 129 0 0 chr4 147845572 147845867 -36442795 + AluSq SINE Alu 1 295 -18 284 348 51 22 chr4 147846079 147846217 -36442445 - L2 LINE L2 -1 3312 3171 2871 280 133 44 chr4 147846804 147847296 -36441366 - L2 LINE L2 -977 2337 1890 2313 98 0 0 chr4 147847296 147847592 -36441070 - AluSx SINE Alu -16 296 1 2871 280 133 44 chr4 147847592 147848115 -36440547 - L2 LINE L2 -1424 1890 1415 1882 143 48 0 chr4 147848115 147848408 -36440254 + AluSx SINE Alu 1 307 -5 2871 280 133 44 chr4 147848408 147848936 -36439726 - L2 LINE L2 -1899 1415 655 1846 167 44 0 chr4 147848945 147849286 -36439376 - MER46B DNA MER2_type -2 234 4 351 296 238 25 chr4 147849548 147849619 -36439043 + L2 LINE L2 2273 2328 -944 2610 110 6 6 chr4 147849619 147849983 -36438679 + THE1B LTR MaLR 1 364 0 351 296 238 25 chr4 147849983 147850593 -36438069 + L2 LINE L2 2328 3095 -177 700 224 41 93 chr4 147851147 147851177 -36437485 + MIR SINE MIR 5 35 -227 2162 133 3 0 chr4 147851177 147851485 -36437177 + AluSq SINE Alu 1 309 -4 700 224 41 93 chr4 147851485 147851700 -36436962 + MIR SINE MIR 35 237 -25 755 153 0 8 chr4 147851809 147851927 -36436735 + FLAM_C SINE Alu 1 117 -26 2183 112 0 7 chr4 147852694 147852990 -36435672 - AluSg SINE Alu -16 294 1 2189 103 0 3 chr4 147853525 147853815 -36434847 - AluSx SINE Alu -23 289 1 2059 127 17 0 chr4 147853888 147854179 -36434483 - AluSx SINE Alu -16 296 1 1767 75 46 0 chr4 147855375 147855616 -36433046 + L1PA7 LINE L1 5903 6154 0 2397 82 20 0 chr4 147856101 147856405 -36432257 + AluY SINE Alu 1 310 -1 184 288 150 0 chr4 147856640 147856720 -36431942 - L3 LINE CR1 0 1577 1486 2127 82 17 10 chr4 147856776 147857067 -36431595 + AluSc SINE Alu 1 293 -16 1051 124 25 0 chr4 147857067 147857228 -36431434 + AluSg/x SINE Alu 134 298 -14 655 239 51 35 chr4 147858199 147858396 -36430266 + MIR SINE MIR 40 239 -23 2477 77 0 3 chr4 147858548 147858860 -36429802 - AluY SINE Alu 0 311 1 5666 226 13 26 chr4 147860931 147862589 -36426073 - L1 LINE L1 -2331 3815 2180 614 212 0 30 chr4 147862589 147862721 -36425941 - AluJb SINE Alu -10 302 175 2267 233 26 48 chr4 147862721 147862915 -36425747 - L1PBb LINE L1 -4329 1874 1677 1838 137 0 90 chr4 147862915 147863258 -36425404 - AluJb SINE Alu 0 312 1 2267 233 26 48 chr4 147863258 147863435 -36425227 - L1PBb LINE L1 -4526 1677 1498 1701 171 10 16 chr4 147863435 147863739 -36424923 - AluJb SINE Alu -10 302 1 2507 63 0 0 chr4 147863741 147864042 -36424620 - AluY SINE Alu -10 301 1 2267 233 26 48 chr4 147864042 147864707 -36423955 - L1PBb LINE L1 -4706 1497 773 289 267 6 0 chr4 147865107 147865258 -36423404 - L1PBb LINE L1 -5326 878 690 * 7173 191 100 12 chr4 147865244 147866679 -36421983 - L1PA15-16 LINE L1 -5286 1563 3 344 248 32 80 chr4 147866684 147866809 -36421853 + MIR SINE MIR 84 202 -60 * 384 299 61 8 chr4 147866785 147866948 -36421714 - MIR SINE MIR -32 176 8 564 246 139 33 chr4 147867268 147867483 -36421179 - MIR SINE MIR -23 239 2 9705 36 3 1 chr4 147869546 147870615 -36418047 - MER11C LTR ERVK 0 1071 1 1600 113 81 0 chr4 147871087 147871334 -36417328 + L1PA15 LINE L1 5730 5996 -169 1279 167 38 19 chr4 147871338 147871586 -36417076 + AluJb SINE Alu 41 296 -16 887 117 22 0 chr4 147871586 147871723 -36416939 + L1PA15 LINE L1 6023 6162 -3 1279 167 38 19 chr4 147871723 147871737 -36416925 + AluJb SINE Alu 296 308 -4 1732 226 29 84 chr4 147871777 147872371 -36416291 - MER68 LTR ERV1 0 562 2 2031 115 10 19 chr4 147872951 147873264 -36415398 - AluSx SINE Alu -2 310 1 545 205 80 26 chr4 147873821 147873972 -36414690 + L1MC5 LINE L1 7755 7913 -48 368 162 0 86 chr4 147874493 147874598 -36414064 - MIR SINE MIR -88 174 79 2305 79 0 3 chr4 147876283 147876573 -36412089 - AluY SINE Alu -20 291 3 1851 166 91 17 chr4 147877227 147877588 -36411074 + MLT1B LTR MaLR 1 388 -2 251 233 90 45 chr4 147878477 147878610 -36410052 + L1 LINE L1 2888 3026 -3120 421 335 139 38 chr4 147878928 147879612 -36409050 + L1 LINE L1 3514 4266 -1880 5210 103 37 3 chr4 147879621 147880369 -36408293 + LTR17 LTR ERV1 1 774 -6 7553 42 27 0 chr4 147880487 147881710 -36406952 - L1PA5 LINE L1 0 6154 4917 469 267 169 19 chr4 147881871 147882178 -36406484 - MLT1L LTR MaLR -45 570 218 381 327 94 31 chr4 147882375 147882693 -36405969 + L2 LINE L2 2397 2734 -580 22 0 0 0 chr4 147883318 147883340 -36405322 + AT_rich Low_complexity Low_complexity 1 22 0 195 303 0 40 chr4 147883635 147883711 -36404951 - L2 LINE L2 0 3272 3200 737 208 18 12 chr4 147883823 147883991 -36404671 - MER5B DNA MER1_type -3 175 7 227 233 0 0 chr4 147884059 147884102 -36404560 - MER5A DNA MER1_type 0 189 147 604 318 140 20 chr4 147885282 147885631 -36403031 + L2 LINE L2 2913 3303 -10 1983 154 7 0 chr4 147886291 147886597 -36402065 + AluSx SINE Alu 1 308 -4 15305 90 23 1 chr4 147886668 147889511 -36399151 - L1PA8 LINE L1 -1 6171 3285 284 324 125 0 chr4 147889874 147890010 -36398652 + MIR SINE MIR 100 252 -10 180 0 0 0 chr4 147890331 147890351 -36398311 + (A)n Simple_repeat Simple_repeat 1 20 0 235 333 80 73 chr4 147891295 147891721 -36396941 - L2 LINE L2 -27 3245 2817 442 229 99 8 chr4 147891789 147891920 -36396742 - MER3 DNA MER1_type -5 204 62 183 330 121 29 chr4 147891966 147892596 -36396066 - L2 LINE L2 -626 2688 2001 799 134 52 0 chr4 147893517 147893651 -36395011 - L1MB2 LINE L1 -2 6169 6029 3782 163 34 7 chr4 147893662 147894429 -36394233 - L1MB2 LINE L1 -219 5964 5180 194 319 56 14 chr4 147895113 147895185 -36393477 + MIR SINE MIR 102 176 -86 563 220 0 0 chr4 147895420 147895529 -36393133 + MER45A DNA AcHobo 61 169 -9 2829 201 15 8 chr4 147895966 147896498 -36392164 - MER82 DNA MER2_type 0 653 118 2735 139 57 53 chr4 147896501 147896824 -36391838 - LTR26B LTR ERV1 0 531 204 1761 73 13 47 chr4 147896824 147897058 -36391604 + MER30 DNA MER1_type 1 226 -4 2735 139 57 53 chr4 147897058 147897260 -36391402 - LTR26B LTR ERV1 -327 204 4 687 174 8 16 chr4 147897260 147897381 -36391281 - MER82 DNA MER2_type -533 120 1 826 243 157 21 chr4 147897790 147898070 -36390592 - MER58B DNA MER1_type 0 341 24 5975 174 29 21 chr4 147898170 147899607 -36389055 + L1PA16 LINE L1 3982 5442 -724 2310 120 131 13 chr4 147899607 147899990 -36388672 - MSTA LTR MaLR 0 428 1 5975 174 29 21 chr4 147899990 147900719 -36387943 + L1PA16 LINE L1 5442 6164 -2 253 286 0 0 chr4 147900823 147900886 -36387776 + MIR SINE MIR 199 261 -1 202 305 68 0 chr4 147901203 147901262 -36387400 - L2 LINE L2 -5 3308 3246 295 349 8 8 chr4 147901389 147901518 -36387144 - L3 LINE CR1 -189 1388 1260 1750 204 35 50 chr4 147902560 147902962 -36385700 + MSTD LTR MaLR 1 396 0 2785 80 43 0 chr4 147903321 147903670 -36384992 + THE1B LTR MaLR 1 364 0 6553 101 23 3 chr4 147904052 147904983 -36383679 + L1MA3 LINE L1 5357 6305 0 2064 128 7 3 chr4 147905318 147905616 -36383046 + AluSq SINE Alu 1 299 -14 375 273 76 15 chr4 147905839 147905971 -36382691 + MIR SINE MIR 12 151 -111 22 35 0 0 chr4 147906026 147906055 -36382607 + AT_rich Low_complexity Low_complexity 1 29 0 202 296 72 32 chr4 147906579 147906704 -36381958 + L2 LINE L2 2729 2858 -456 1923 147 0 22 chr4 147907256 147907568 -36381094 - AluSq SINE Alu -8 305 1 189 0 0 0 chr4 147909029 147909050 -36379612 + (A)n Simple_repeat Simple_repeat 1 21 0 263 241 299 0 chr4 147909307 147909444 -36379218 - L2 LINE L2 -5 3308 3131 471 232 10 0 chr4 147910623 147910722 -36377940 - MER58B DNA MER1_type -30 311 212 506 297 91 6 chr4 147911939 147912104 -36376558 + MER8 DNA MER2_type 1 179 -60 226 281 105 0 chr4 147912080 147912137 -36376525 + MER2 DNA MER2_type 283 345 0 * 234 320 0 27 chr4 147912286 147912361 -36376301 - MER91A DNA MER1_type -123 73 1 546 280 140 21 chr4 147912363 147912642 -36376020 + L2 LINE L2 3002 3313 0 183 297 16 0 chr4 147912652 147912716 -36375946 + MIR SINE MIR 76 140 -122 192 163 0 0 chr4 147913356 147913399 -36375263 + A-rich Low_complexity Low_complexity 1 43 0 1437 240 32 53 chr4 147913751 147913824 -36374838 + MLT1C LTR MaLR 1 74 -393 1909 215 67 31 chr4 147913824 147914363 -36374299 - MER74A LTR ERVL 0 558 1 1437 240 32 53 chr4 147914363 147914759 -36373903 + MLT1C LTR MaLR 74 460 -7 205 278 31 84 chr4 147914999 147915190 -36373472 - L2 LINE L2 -208 3064 2884 1915 124 57 0 chr4 147915414 147915697 -36372965 + AluSx SINE Alu 1 299 -13 252 290 0 0 chr4 147915750 147915819 -36372843 - Tigger5 DNA MER2_type -1 2322 2254 621 218 71 38 chr4 147915825 147916034 -36372628 + MIR SINE MIR 39 260 -2 1965 228 119 21 chr4 147916950 147917725 -36370937 + L1ME3A LINE L1 5269 6119 -51 3150 52 0 0 chr4 147918615 147919003 -36369659 + L1PA5 LINE L1 5763 6150 -4 517 29 0 0 chr4 147921549 147921618 -36367044 + L1PA2 LINE L1 6087 6155 0 202 281 149 8 chr4 147922264 147922385 -36366277 + MIR SINE MIR 84 221 -41 23 33 0 0 chr4 147923508 147923538 -36365124 + AT_rich Low_complexity Low_complexity 1 30 0 296 241 95 9 chr4 147923764 147923880 -36364782 + L1ME LINE L1 5554 5679 -442 3472 231 94 32 chr4 147923909 147925357 -36363305 + L1ME1 LINE L1 2371 3908 -2238 2347 243 46 16 chr4 147925357 147926601 -36362061 + L1ME1 LINE L1 4877 6161 -5 728 195 0 0 chr4 147926628 147926746 -36361916 + FLAM_C SINE Alu 1 118 -15 309 231 0 51 chr4 147927926 147928004 -36360658 - MIR SINE MIR -186 76 3 688 226 83 34 chr4 147928768 147928972 -36359690 - MER20 DNA MER1_type -5 214 1 319 266 0 13 chr4 147928983 147929062 -36359600 - L2 LINE L2 -43 3270 3193 2271 67 3 35 chr4 147929394 147929706 -36358956 - AluY SINE Alu -9 302 1 386 251 131 60 chr4 147929725 147930170 -36358492 + L1MC5 LINE L1 7300 7798 -163 1884 101 30 11 chr4 147930170 147930437 -36358225 + AluSq SINE Alu 28 299 -14 386 251 131 60 chr4 147930437 147930577 -36358085 + L1MC5 LINE L1 7798 7927 -34 2115 135 0 0 chr4 147930678 147930975 -36357687 + AluSq SINE Alu 1 297 -16 180 0 0 0 chr4 147931133 147931153 -36357509 + (A)n Simple_repeat Simple_repeat 1 20 0 2000 176 85 22 chr4 147932186 147932639 -36356023 + MER61D LTR ERV1 1 501 0 230 321 57 9 chr4 147933304 147933410 -36355252 + MIR SINE MIR 77 187 -75 258 296 25 0 chr4 147935728 147935809 -36352853 + GA-rich Low_complexity Low_complexity 2 84 0 415 179 164 8 chr4 147939363 147939497 -36349165 + L1MC5 LINE L1 7763 7917 -44 3453 93 15 21 chr4 147940004 147940387 -36348275 - L1PA13 LINE L1 -3 6160 5779 2214 118 3 0 chr4 147940387 147940683 -36347979 - AluSq SINE Alu -16 297 1 3453 93 15 21 chr4 147940683 147940824 -36347838 - L1PA13 LINE L1 -384 5779 5639 1782 164 21 9 chr4 147940894 147941229 -36347433 + MLT1B LTR MaLR 1 339 -51 1672 134 108 16 chr4 147941243 147941548 -36347114 - MER1B DNA MER1_type -6 333 1 368 113 0 0 chr4 147941549 147941602 -36347060 + MLT1B LTR MaLR 336 388 -2 2797 16 0 3 chr4 147941752 147942063 -36346599 + AluYb8 SINE Alu 1 310 -8 257 281 37 49 chr4 147943327 147943409 -36345253 - L2 LINE L2 -4 3309 3229 1581 181 17 7 chr4 147943536 147943823 -36344839 - AluJb SINE Alu -18 294 5 866 352 4 28 chr4 147943895 147944358 -36344304 + L1M3a LINE L1 1 452 -5503 1038 245 47 69 chr4 147944671 147944992 -36343670 + L1M3f LINE L1 539 841 -4487 961 200 0 0 chr4 147944992 147945157 -36343505 + FAM SINE Alu 5 169 -6 1038 245 47 69 chr4 147945157 147945398 -36343264 + L1M3f LINE L1 841 1086 -4242 302 239 124 107 chr4 147945409 147945560 -36343102 + MER46C DNA MER2_type 101 259 -79 6119 80 39 3 chr4 147945560 147946637 -36342025 - L1PA11 LINE L1 -1 6173 5059 302 239 124 107 chr4 147946637 147946719 -36341943 + MER46C DNA MER2_type 259 338 0 203 318 0 15 chr4 147948234 147948300 -36340362 + L2 LINE L2 3249 3313 0 686 224 86 6 chr4 147949368 147949542 -36339120 + MIR SINE MIR 59 246 -16 268 262 82 69 chr4 147950708 147950869 -36337793 + MIR SINE MIR 31 192 -69 289 338 75 12 chr4 147951287 147951447 -36337215 + MIR SINE MIR 14 183 -79 303 315 228 12 chr4 147951494 147952135 -36336527 + L2 LINE L2 1901 2679 -635 1078 241 62 20 chr4 147952350 147952702 -36335960 + LTR40a LTR ERVL 131 497 -22 21 0 0 0 chr4 147953390 147953411 -36335251 + AT_rich Low_complexity Low_complexity 1 21 0 559 284 195 5 chr4 147953495 147953710 -36334952 - MIR SINE MIR 0 262 7 191 281 0 83 chr4 147955354 147955450 -36333212 - L2 LINE L2 -12 3301 3214 2801 0 0 0 chr4 147955672 147955972 -36332690 - AluYa8 SINE Alu -10 300 1 215 309 79 20 chr4 147956976 147957078 -36331584 - MER5B DNA MER1_type -49 140 22 195 337 148 0 chr4 147957695 147957796 -36330866 - MIR SINE MIR -6 256 141 231 114 0 0 chr4 147957796 147957831 -36330831 + (A)n Simple_repeat Simple_repeat 1 35 0 786 143 0 41 chr4 147959969 147960116 -36328546 - MLT1D LTR MaLR -1 504 364 1655 152 3 35 chr4 147960116 147960399 -36328263 - AluJo SINE Alu -38 274 1 813 115 145 128 chr4 147960400 147960634 -36328028 - MLT1D LTR MaLR -267 238 1 257 222 83 0 chr4 147960698 147960770 -36327892 - MIR SINE MIR -126 136 59 405 206 0 0 chr4 147960772 147960864 -36327798 - L2 LINE L2 -633 2681 2590 1031 174 5 36 chr4 147961035 147961259 -36327403 + MLT1B LTR MaLR 1 217 -173 389 309 146 39 chr4 147963007 147963240 -36325422 - MIR SINE MIR -3 259 2 1784 156 179 60 chr4 147963693 147964239 -36324423 + LTR36 LTR ERV1 1 611 0 12751 191 68 16 chr4 147964585 147964959 -36323703 - L1PB1 LINE L1 -1 6866 6513 509 79 0 40 chr4 147964959 147965060 -36323602 + (TA)n Simple_repeat Simple_repeat 2 98 0 12751 191 68 16 chr4 147965060 147966898 -36321764 - L1PB1 LINE L1 -354 6513 4773 2173 123 0 3 chr4 147966898 147967199 -36321463 - AluSx SINE Alu -12 300 1 12751 191 68 16 chr4 147967199 147970704 -36317958 - L1PB1 LINE L1 -2094 4773 830 1815 267 86 8 chr4 147971186 147972015 -36316647 - L1PB1 LINE L1 -5965 898 6 598 123 9 26 chr4 147972029 147972143 -36316519 + MER2 DNA MER2_type 95 206 -139 237 255 20 0 chr4 147972181 147972232 -36316430 + MER2 DNA MER2_type 280 331 -14 521 315 76 43 chr4 147972281 147972649 -36316013 - L1M4 LINE L1 -1095 5051 4672 321 273 9 9 chr4 147972669 147972779 -36315883 - L1M4 LINE L1 -1536 4610 4501 1370 256 92 36 chr4 147973943 147974680 -36313982 - L2 LINE L2 -4 3309 2509 36 53 0 0 chr4 147975377 147975434 -36313228 + AT_rich Low_complexity Low_complexity 1 57 0 222 193 0 0 chr4 147975763 147975820 -36312842 + (TATG)n Simple_repeat Simple_repeat 2 58 0 417 254 36 93 chr4 147976409 147976602 -36312060 + MIR SINE MIR 35 216 -46 214 363 44 26 chr4 147978536 147978649 -36310013 - L2 LINE L2 -181 3091 2977 192 373 150 0 chr4 147978725 147978878 -36309784 - L2 LINE L2 -461 2853 2678 224 250 167 33 chr4 147979019 147979139 -36309523 - L2 LINE L2 -828 2486 2351 * 518 270 61 65 chr4 147979132 147979362 -36309300 - L2 LINE L2 -1 3312 3084 379 314 157 22 chr4 147979342 147979565 -36309097 - L2 LINE L2 -938 2376 2124 * 289 281 37 0 chr4 147980616 147980698 -36307964 - MIR SINE MIR -10 252 168 429 297 54 58 chr4 147980826 147981085 -36307577 - MIR SINE MIR 0 262 5 1636 154 16 79 chr4 147981802 147982120 -36306542 + AluJb SINE Alu 5 302 -10 1800 142 52 7 chr4 147982878 147983166 -36305496 - AluJo SINE Alu -11 301 1 3706 126 45 19 chr4 147983612 147984305 -36304357 + MER50 LTR ERV1 1 711 -23 313 284 22 22 chr4 147984545 147984679 -36303983 + GA-rich Low_complexity Low_complexity 6 139 0 425 275 58 0 chr4 147986139 147986259 -36302403 - L2 LINE L2 0 3313 3187 771 311 164 46 chr4 147986652 147987594 -36301068 + L2 LINE L2 2204 3269 -3 2426 189 30 2 chr4 147988194 147988843 -36299819 + L1MB4 LINE L1 5099 5770 -410 2743 222 22 9 chr4 147988844 147989474 -36299188 + MER82 DNA MER2_type 15 652 -1 1864 142 71 0 chr4 147989476 147989842 -36298820 + L1MB4 LINE L1 5782 6173 -7 1842 155 33 3 chr4 147991847 147992150 -36296512 - AluSx SINE Alu 0 312 1 2200 97 0 58 chr4 147992668 147992997 -36295665 - AluSg SINE Alu 0 310 1 207 0 0 0 chr4 147993487 147993510 -36295152 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 9676 26 3 18 chr4 147993961 147995987 -36292675 + L1PA3 LINE L1 4165 6155 0 623 218 100 0 chr4 147995991 147996161 -36292501 - MIR SINE MIR 0 262 76 22 70 0 0 chr4 147996665 147996708 -36291954 + AT_rich Low_complexity Low_complexity 1 43 0 209 297 50 30 chr4 147997109 147997210 -36291452 + MIR SINE MIR 91 193 -69 21 0 0 0 chr4 147997986 147998007 -36290655 + AT_rich Low_complexity Low_complexity 1 21 0 627 244 70 12 chr4 147998182 147998424 -36290238 - MIR SINE MIR -3 259 4 23 0 0 0 chr4 147999459 147999482 -36289180 + AT_rich Low_complexity Low_complexity 1 23 0 1784 112 0 23 chr4 148000112 148000370 -36288292 - AluSx SINE Alu -18 294 43 633 335 43 50 chr4 148001695 148002071 -36286591 + L3b LINE CR1 1180 1552 -31 311 260 63 24 chr4 148002490 148002617 -36286045 - MIR SINE MIR -11 251 120 209 225 0 0 chr4 148006381 148006421 -36282241 + L2 LINE L2 3265 3304 -9 276 348 45 0 chr4 148007104 148007216 -36281446 - MIR3 SINE MIR -7 201 85 219 154 0 0 chr4 148008263 148008302 -36280360 + (TA)n Simple_repeat Simple_repeat 2 40 0 324 371 28 17 chr4 148008494 148008672 -36279990 + MER5A DNA MER1_type 7 186 -3 1113 160 42 14 chr4 148008801 148009014 -36279648 - MER20 DNA MER1_type 0 219 1 1794 130 67 0 chr4 148010171 148010455 -36278207 - MER1B DNA MER1_type 0 339 37 362 320 121 65 chr4 148011425 148011656 -36277006 - L2 LINE L2 0 3272 3029 2358 174 49 20 chr4 148011971 148012459 -36276203 + MLT1D LTR MaLR 1 502 -3 200 190 52 0 chr4 148013892 148013950 -36274712 + A-rich Low_complexity Low_complexity 3 63 0 238 287 103 38 chr4 148014029 148014189 -36274473 + MER5A DNA MER1_type 1 184 -5 21 0 0 0 chr4 148014352 148014373 -36274289 + AT_rich Low_complexity Low_complexity 1 21 0 751 139 139 0 chr4 148014618 148014755 -36273907 + FRAM SINE Alu 13 168 -8 233 333 44 53 chr4 148015444 148015558 -36273104 + L2 LINE L2 3160 3272 0 1791 145 28 7 chr4 148016811 148017094 -36271568 + AluSx SINE Alu 1 289 -23 225 146 0 0 chr4 148017689 148017737 -36270925 + (A)n Simple_repeat Simple_repeat 1 48 0 299 224 92 13 chr4 148020132 148020208 -36268454 + MIR3 SINE MIR 115 196 -12 227 338 13 0 chr4 148021497 148021574 -36267088 + MIR SINE MIR 24 101 -161 6000 41 0 3 chr4 148021587 148022338 -36266324 - L1PA6 LINE L1 -11 6143 5395 517 301 20 0 chr4 148022341 148022494 -36266168 + MIR SINE MIR 104 259 -3 258 402 31 8 chr4 148022495 148022622 -36266040 - L2 LINE L2 0 3272 3143 1058 170 5 10 chr4 148022670 148022864 -36265798 + MER20 DNA MER1_type 27 219 0 206 175 25 0 chr4 148022872 148022912 -36265750 - MIR SINE MIR -64 198 158 2168 82 23 36 chr4 148022925 148023229 -36265433 + AluSg SINE Alu 1 300 -10 214 272 98 54 chr4 148023600 148023796 -36264866 + MIR SINE MIR 3 211 -51 508 314 37 11 chr4 148023879 148024067 -36264595 - MIR SINE MIR -60 202 10 1063 254 82 46 chr4 148024503 148025131 -36263531 - L1MC4a LINE L1 -803 5343 5245 22 0 0 0 chr4 148025431 148025453 -36263209 + GC_rich Low_complexity Low_complexity 1 22 0 2072 100 0 4 chr4 148025567 148025848 -36262814 - AluSp SINE Alu -33 280 1 568 254 25 8 chr4 148025939 148026061 -36262601 - L2 LINE L2 -5 3308 3185 190 311 75 38 chr4 148026287 148026393 -36262269 + L2 LINE L2 2950 3059 -254 1808 110 65 123 chr4 148026393 148026712 -36261950 - MSTA LTR MaLR 0 428 141 1776 136 4 21 chr4 148026712 148026991 -36261671 + AluJb SINE Alu 1 274 -38 1808 110 65 123 chr4 148026991 148027118 -36261544 - MSTA LTR MaLR -287 141 8 324 318 28 9 chr4 148027231 148027338 -36261324 + L2 LINE L2 3144 3252 -20 2081 131 12 32 chr4 148027562 148027906 -36260756 - MER1B DNA MER1_type 0 337 1 189 0 0 0 chr4 148028044 148028065 -36260597 + (TG)n Simple_repeat Simple_repeat 1 21 0 * 249 33 0 0 chr4 148028064 148028094 -36260568 + (GA)n Simple_repeat Simple_repeat 1 30 0 2045 83 45 4 chr4 148028095 148028361 -36260301 - AluSx SINE Alu -35 277 1 1272 167 30 109 chr4 148028959 148029289 -36259373 - AluJb SINE Alu -8 304 1 336 211 66 0 chr4 148030146 148030222 -36258440 - MIR SINE MIR -71 191 111 1792 172 44 31 chr4 148030394 148030778 -36257884 - MSTD LTR MaLR -7 389 1 1848 160 7 7 chr4 148030828 148031122 -36257540 + AluJb SINE Alu 1 294 -18 193 359 155 19 chr4 148031277 148031380 -36257282 + MIR3 SINE MIR 43 159 -49 1317 167 104 43 chr4 148031381 148031776 -36256886 - Charlie1 DNA MER1_type 0 2761 2343 389 211 0 0 chr4 148031774 148031845 -36256817 - Charlie1 DNA MER1_type -2690 71 1 * 404 340 80 25 chr4 148032023 148032261 -36256401 - MIR SINE MIR -10 252 2 979 102 0 0 chr4 148032731 148032858 -36255804 + AluSp/q SINE Alu 167 293 -20 2811 10 0 3 chr4 148033425 148033737 -36254925 - AluYa5 SINE Alu 0 311 1 881 189 25 186 chr4 148033922 148034357 -36254305 - MLT1A1 LTR MaLR 0 365 1 2278 86 0 29 chr4 148034552 148034866 -36253796 + AluSx SINE Alu 1 305 -7 1806 177 20 3 chr4 148036293 148036592 -36252070 - AluJb SINE Alu -7 305 2 2501 60 0 28 chr4 148038379 148038721 -36249941 + AluY SINE Alu 1 333 0 2162 92 3 11 chr4 148039613 148039895 -36248767 + AluSx SINE Alu 1 280 -32 207 0 0 0 chr4 148039897 148039920 -36248742 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2622 140 62 6 chr4 148039980 148040466 -36248196 - L1MB2 LINE L1 -3 6168 5656 236 295 104 58 chr4 148043194 148043367 -36245295 - MIR SINE MIR -24 238 58 359 322 77 51 chr4 148043893 148044437 -36244225 + L1MEd LINE L1 59 668 -5451 525 300 84 30 chr4 148044624 148045212 -36243450 + L1MEd LINE L1 921 1629 -861 297 0 0 0 chr4 148045242 148045275 -36243387 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 1835 151 14 0 chr4 148045275 148045554 -36243108 - AluSx SINE Alu -29 283 1 3437 109 65 31 chr4 148045794 148046883 -36241779 - MER11A LTR ERVK 0 1236 1 202 219 24 0 chr4 148046911 148046952 -36241710 + GA-rich Low_complexity Low_complexity 1 42 0 447 257 94 38 chr4 148047266 148047760 -36240902 + L1ME3A LINE L1 5317 5882 -310 264 311 49 57 chr4 148049574 148049696 -36238966 - L2 LINE L2 -1 3312 3192 2243 100 28 0 chr4 148049711 148050002 -36238660 - AluSx SINE Alu -13 299 1 271 270 90 10 chr4 148051880 148051980 -36236682 - MIR SINE MIR -40 222 115 248 103 0 0 chr4 148052303 148052342 -36236320 + Charlie8 DNA MER1_type 227 265 -2152 697 258 39 39 chr4 148054840 148055073 -36233589 + MIR SINE MIR 2 234 -28 2050 181 106 0 chr4 148055503 148055917 -36232745 - LTR32 LTR ERVL 0 471 14 236 208 143 13 chr4 148057370 148057447 -36231215 + L2 LINE L2 3220 3306 -7 2930 232 30 19 chr4 148057508 148058624 -36230038 - L1ME1 LINE L1 -1 6234 5108 377 258 68 31 chr4 148058594 148058757 -36229905 - L1ME1 LINE L1 -6189 207 39 * 260 167 91 15 chr4 148060113 148060179 -36228483 - L2 LINE L2 0 3313 3243 563 198 184 23 chr4 148060468 148060685 -36227977 - L2 LINE L2 -912 2402 2151 243 300 20 10 chr4 148061178 148061278 -36227384 - MIR SINE MIR -71 191 91 353 338 41 36 chr4 148062686 148062905 -36225757 + MIR SINE MIR 8 227 -35 23 54 0 0 chr4 148062918 148062955 -36225707 + AT_rich Low_complexity Low_complexity 1 37 0 2423 62 16 20 chr4 148063010 148063314 -36225348 + AluY SINE Alu 1 303 -8 343 102 85 0 chr4 148064046 148064105 -36224557 + L1PA13 LINE L1 6096 6159 -4 537 304 115 5 chr4 148064797 148064988 -36223674 + MIR SINE MIR 50 261 -1 24 32 0 0 chr4 148065123 148065154 -36223508 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr4 148067527 148067555 -36221107 + AT_rich Low_complexity Low_complexity 1 28 0 180 227 106 0 chr4 148067697 148067763 -36220899 - L3 LINE CR1 -585 992 920 285 256 101 85 chr4 148068613 148068742 -36219920 - MIR SINE MIR -6 256 126 540 326 81 50 chr4 148069773 148070034 -36218628 - L2 LINE L2 -1 3271 3003 237 248 162 86 chr4 148071078 148071140 -36217522 - MIR SINE MIR -28 234 178 1561 173 50 7 chr4 148071140 148071418 -36217244 - AluJo SINE Alu -19 293 4 237 248 162 86 chr4 148071418 148071553 -36217109 - MIR SINE MIR -84 178 22 467 322 87 14 chr4 148071783 148071938 -36216724 + MIR SINE MIR 26 201 -61 1601 162 45 27 chr4 148071938 148072271 -36216391 - MER44D DNA MER2_type 0 609 1 467 322 87 14 chr4 148072271 148072323 -36216339 + MIR SINE MIR 201 248 -14 238 348 90 0 chr4 148072371 148072526 -36216136 + MIR SINE MIR 7 175 -87 23 78 0 0 chr4 148073053 148073104 -36215558 + AT_rich Low_complexity Low_complexity 1 51 0 2249 104 0 3 chr4 148073172 148073479 -36215183 + AluSx SINE Alu 1 306 -6 1390 176 0 100 chr4 148073490 148073809 -36214853 - AluJb SINE Alu -15 287 1 1933 148 3 10 chr4 148074391 148074702 -36213960 - AluSx SINE Alu -3 309 1 239 296 102 0 chr4 148075045 148075133 -36213529 + MIR3 SINE MIR 72 168 -40 187 385 12 12 chr4 148077256 148077339 -36211323 - L2 LINE L2 -225 3047 2965 372 341 73 9 chr4 148078253 148078473 -36210189 + MIR SINE MIR 27 260 -2 816 232 16 49 chr4 148078873 148079119 -36209543 - Charlie8 DNA MER1_type -2147 270 33 1067 212 98 33 chr4 148079949 148079991 -36208671 - MER58B DNA MER1_type -2103 317 279 1792 124 0 33 chr4 148079991 148080264 -36208398 - AluY SINE Alu -13 298 35 1067 212 98 33 chr4 148080264 148080495 -36208167 - MER58B DNA MER1_type -2141 279 26 598 287 61 6 chr4 148080563 148080744 -36207918 - MIR SINE MIR -49 213 23 224 290 113 48 chr4 148080770 148080894 -36207768 + MER5B DNA MER1_type 2 133 -45 2531 234 107 25 chr4 148082788 148083575 -36205087 - L1MB7 LINE L1 -80 6104 5254 1397 157 164 41 chr4 148083644 148084137 -36204525 + Charlie1 DNA MER1_type 1 2711 -50 930 221 0 0 chr4 148084137 148084300 -36204362 - AluJb SINE Alu -16 296 134 1958 151 0 3 chr4 148084300 148084598 -36204064 - AluJo SINE Alu -15 297 1 269 263 0 0 chr4 148084599 148084656 -36204006 + Charlie1 DNA MER1_type 2700 2756 -5 1777 163 34 0 chr4 148084734 148085028 -36203634 + AluJo SINE Alu 1 304 -8 2317 110 0 3 chr4 148085821 148086129 -36202533 + AluSx SINE Alu 1 307 -5 216 214 23 168 chr4 148086129 148086302 -36202360 + MIR SINE MIR 115 262 0 200 280 0 67 chr4 148086999 148087074 -36201588 - L2 LINE L2 -4 3309 3240 215 351 134 29 chr4 148087526 148087697 -36200965 + L2 LINE L2 3070 3258 -14 405 369 58 41 chr4 148087903 148088296 -36200366 - L2 LINE L2 -775 2539 2140 241 326 135 0 chr4 148088576 148088665 -36199997 + L2 LINE L2 3169 3269 -3 374 325 72 36 chr4 148088837 148089031 -36199631 + MIR SINE MIR 1 201 -61 26 30 0 0 chr4 148090186 148090219 -36198443 + AT_rich Low_complexity Low_complexity 1 33 0 2030 188 113 59 chr4 148090441 148091084 -36197578 - L1ME2 LINE L1 -118 6046 5369 4278 203 76 48 chr4 148091132 148092369 -36196293 - L1MC4a LINE L1 0 7808 6537 965 218 66 41 chr4 148092376 148092693 -36195969 - L1MC4a LINE L1 -1787 6021 5697 631 200 46 41 chr4 148092697 148092892 -36195770 - L1ME2 LINE L1 -816 5330 5135 1840 172 52 7 chr4 148093328 148093680 -36194982 + MER61C LTR ERV1 1 434 0 1980 142 0 10 chr4 148094396 148094706 -36193956 - AluSx SINE Alu -4 308 2 264 327 43 19 chr4 148094706 148094868 -36193794 + MLT1L LTR MaLR 448 613 -2 13875 113 40 52 chr4 148095552 148097578 -36191084 - Tigger1 DNA MER2_type 0 2418 424 1715 161 4 4 chr4 148097578 148097839 -36190823 - AluJb SINE Alu -19 293 33 13875 113 40 52 chr4 148097839 148098258 -36190404 - Tigger1 DNA MER2_type -1994 424 2 389 204 42 58 chr4 148098485 148098601 -36190061 - LTR29 LTR ERV1 -76 568 452 2100 107 0 39 chr4 148098601 148098911 -36189751 + AluY SINE Alu 1 298 -13 389 204 42 58 chr4 148098911 148099005 -36189657 - LTR29 LTR ERV1 -192 452 318 676 89 10 0 chr4 148099021 148099122 -36189540 - L1PA15 LINE L1 0 6165 6064 342 196 205 73 chr4 148099317 148099474 -36189188 + L1MC5 LINE L1 7535 7670 -291 189 0 0 0 chr4 148099474 148099495 -36189167 + (TA)n Simple_repeat Simple_repeat 1 21 0 342 196 205 73 chr4 148099495 148099664 -36188998 + L1MC5 LINE L1 7670 7904 -57 360 270 17 0 chr4 148099795 148099910 -36188752 - L1MB8 LINE L1 -2 6176 6060 26 0 0 0 chr4 148100693 148100719 -36187943 + AT_rich Low_complexity Low_complexity 1 26 0 483 185 67 17 chr4 148100936 148101055 -36187607 + MER94 DNA DNA 10 134 0 25 0 0 0 chr4 148102287 148102312 -36186350 + AT_rich Low_complexity Low_complexity 1 25 0 279 363 123 47 chr4 148102898 148103322 -36185340 - L2 LINE L2 -6 3266 2811 515 173 15 23 chr4 148104263 148104396 -36184266 - MER33 DNA MER1_type -45 279 148 206 95 24 0 chr4 148104437 148104479 -36184183 + (TA)n Simple_repeat Simple_repeat 2 44 0 774 167 7 21 chr4 148104479 148104623 -36184039 - MER33 DNA MER1_type -181 143 2 2203 104 0 0 chr4 148105235 148105523 -36183139 + AluSx SINE Alu 1 288 -24 320 295 162 37 chr4 148105785 148106056 -36182606 + L2 LINE L2 3009 3313 0 1821 121 22 16 chr4 148106143 148106465 -36182197 + L1MB3 LINE L1 5858 6181 -2 300 252 128 30 chr4 148106468 148106653 -36182009 + L1P4 LINE L1 5432 5637 -526 1798 183 7 10 chr4 148107259 148107565 -36181097 - AluJo SINE Alu -7 305 1 275 301 60 0 chr4 148108668 148108751 -36179911 + MIR SINE MIR 23 110 -152 323 333 143 0 chr4 148109429 148109597 -36179065 - MIR SINE MIR -3 259 68 327 280 122 9 chr4 148109620 148109727 -36178935 + MIR SINE MIR 30 148 -114 261 0 0 0 chr4 148110329 148110358 -36178304 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2251 107 0 7 chr4 148110779 148111089 -36177573 - AluSq SINE Alu -5 308 1 204 220 20 20 chr4 148111905 148111955 -36176707 + L2 LINE L2 3264 3313 0 21 71 0 0 chr4 148112302 148112344 -36176318 + AT_rich Low_complexity Low_complexity 1 42 0 1969 113 14 34 chr4 148165806 148166099 -36122563 - AluSx SINE Alu -25 287 1 2725 234 72 11 chr4 148166185 148166992 -36121670 + L1ME1 LINE L1 5285 6140 -26 336 94 0 0 chr4 148167321 148167374 -36121288 + (GA)n Simple_repeat Simple_repeat 1 53 0 305 250 118 0 chr4 148167435 148167511 -36121151 + MIR SINE MIR 60 144 -64 2143 89 0 38 chr4 148168326 148168662 -36120000 + AluY SINE Alu 1 325 0 41199 51 27 1 chr4 148170708 148176706 -36111956 - L1PA2 LINE L1 0 6155 2 1428 133 47 13 chr4 148176983 148177133 -36111529 - L1MA8 LINE L1 -348 5943 5781 429 90 0 0 chr4 148177133 148177200 -36111462 + (TG)n Simple_repeat Simple_repeat 2 68 0 1428 133 47 13 chr4 148177200 148177283 -36111379 - L1MA8 LINE L1 -510 5781 5702 * 1696 153 84 23 chr4 148177280 148177626 -36111036 + L1MA9 LINE L1 5944 6310 -2 2092 126 7 0 chr4 148178758 148179051 -36109611 - AluSx SINE Alu -17 295 1 313 281 38 91 chr4 148181566 148181775 -36106887 - MIR SINE MIR -55 207 9 2359 104 0 0 chr4 148182148 148182457 -36106205 + AluSc SINE Alu 1 309 0 261 337 86 12 chr4 148184892 148185055 -36103607 + MIR SINE MIR 82 256 -6 405 272 96 16 chr4 148185075 148185200 -36103462 - L2 LINE L2 -4 3309 3175 474 301 156 42 chr4 148185723 148186108 -36102554 + L1MC4 LINE L1 7605 8033 -9 421 141 42 0 chr4 148186299 148186370 -36102292 - MLT1A1 LTR MaLR 0 365 292 * 500 267 58 110 chr4 148186366 148186711 -36101951 + MLT1F1 LTR MaLR 67 393 -174 312 133 0 0 chr4 148186734 148186779 -36101883 - MLT1B LTR MaLR -6 384 340 691 183 92 0 chr4 148186880 148187011 -36101651 - MLT1B LTR MaLR -228 162 20 679 199 43 0 chr4 148187037 148187178 -36101484 + MLT1F1 LTR MaLR 421 567 0 1972 186 42 21 chr4 148187225 148187703 -36100959 - Looper DNA T2_type -125 1433 946 1970 182 31 0 chr4 148188400 148188751 -36099911 - MER47A DNA MER2_type -1 365 4 583 282 102 14 chr4 148190744 148190960 -36097702 + MIR SINE MIR 12 246 -16 1839 154 3 35 chr4 148191346 148191658 -36097004 + AluJo SINE Alu 1 302 -10 25 51 0 0 chr4 148191709 148191748 -36096914 + AT_rich Low_complexity Low_complexity 1 39 0 198 0 0 0 chr4 148192696 148192718 -36095944 + (A)n Simple_repeat Simple_repeat 1 22 0 662 185 30 0 chr4 148193647 148193782 -36094880 - MER3 DNA MER1_type -70 139 1 1051 128 7 0 chr4 148194129 148194278 -36094384 + AluSq SINE Alu 1 150 -163 1172 71 0 0 chr4 148194431 148194572 -36094090 + AluSq SINE Alu 159 299 -14 852 249 85 30 chr4 148194592 148195100 -36093562 + L1ME2 LINE L1 5479 6058 -106 1985 157 35 26 chr4 148195556 148195901 -36092761 + MER61C LTR ERV1 86 433 -1 680 198 0 84 chr4 148195918 148196085 -36092577 + MER61C-int LTR ERV1 18 170 -5047 1163 154 4 130 chr4 148196153 148196485 -36092177 + MER61C-int LTR ERV1 182 764 -4763 3283 185 87 68 chr4 148196485 148197255 -36091407 + MER61C-int LTR ERV1 413 1128 -4089 1975 109 64 0 chr4 148197255 148197538 -36091124 - AluSp SINE Alu -12 301 1 3283 185 87 68 chr4 148197538 148198062 -36090600 + MER61C-int LTR ERV1 1128 1640 -3577 * 14320 156 87 62 chr4 148198047 148199249 -36089413 + MER61C-int LTR ERV1 1978 3148 -2069 1083 99 0 0 chr4 148199249 148199391 -36089271 + AluSp/q SINE Alu 164 305 -8 14320 156 87 62 chr4 148199391 148201208 -36087454 + MER61C-int LTR ERV1 3148 5217 0 1921 142 59 9 chr4 148201225 148201548 -36087114 + MER61C LTR ERV1 86 424 -10 22 0 0 0 chr4 148202061 148202083 -36086579 + AT_rich Low_complexity Low_complexity 1 22 0 2342 92 34 53 chr4 148204999 148205232 -36083430 + L1MA5A LINE L1 5889 6112 -185 1840 140 36 4 chr4 148205232 148205511 -36083151 + AluJb SINE Alu 1 288 -24 2342 92 34 53 chr4 148205511 148205691 -36082971 + L1MA5A LINE L1 6112 6294 -3 211 380 93 9 chr4 148205822 148205930 -36082732 - L2 LINE L2 -34 3238 3122 230 325 62 12 chr4 148205986 148206066 -36082596 - L2 LINE L2 -67 3205 3122 200 347 67 13 chr4 148206124 148206199 -36082463 - L2 LINE L2 -68 3204 3126 189 355 149 8 chr4 148206232 148206353 -36082309 - MIR3 SINE MIR -35 173 36 191 246 92 31 chr4 148206389 148206454 -36082208 + MIR SINE MIR 187 255 -7 4059 260 157 31 chr4 148206712 148208614 -36080048 + L2 LINE L2 1039 3172 -141 1717 197 116 3 chr4 148208618 148208999 -36079663 - MER63B DNA MER1_type -1 435 12 297 228 54 54 chr4 148209017 148209109 -36079553 + L2 LINE L2 3222 3313 0 247 284 129 26 chr4 148210038 148210154 -36078508 - MIR SINE MIR -74 188 61 328 262 178 31 chr4 148212647 148212872 -36075790 + L1ME4a LINE L1 5851 6108 -13 1907 139 31 0 chr4 148213325 148213613 -36075049 - AluJo SINE Alu -13 299 3 1222 110 0 0 chr4 148213742 148213906 -36074756 + AluSp SINE Alu 148 311 -2 303 23 0 0 chr4 148214394 148214437 -36074225 - L1PA2 LINE L1 0 6155 6113 239 338 0 13 chr4 148214988 148215065 -36073597 - MIR SINE MIR -155 107 32 267 189 0 0 chr4 148215518 148215571 -36073091 + (TA)n Simple_repeat Simple_repeat 1 53 0 306 333 53 9 chr4 148215846 148215960 -36072702 - MIR SINE MIR -56 206 88 2289 137 65 12 chr4 148216896 148217297 -36071365 + MSTB LTR MaLR 1 422 -4 368 141 84 0 chr4 148218335 148218406 -36070256 + L1MB8 LINE L1 6093 6169 -9 1477 181 0 36 chr4 148219188 148219465 -36069197 + AluSx SINE Alu 1 267 -45 180 0 0 0 chr4 148219575 148219595 -36069067 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 725 215 27 27 chr4 148219595 148219744 -36068918 + MLT1J LTR MaLR 64 212 -299 29 0 0 0 chr4 148220157 148220186 -36068476 + AT_rich Low_complexity Low_complexity 1 29 0 2026 125 4 0 chr4 148220467 148220748 -36067914 + AluSx SINE Alu 3 308 0 184 42 0 0 chr4 148220748 148220772 -36067890 + (CAAA)n Simple_repeat Simple_repeat 2 172 0 2310 160 25 40 chr4 148220924 148221398 -36067264 - MLT1C LTR MaLR 0 467 1 1993 141 3 10 chr4 148222993 148223298 -36065364 - AluJb SINE Alu -9 303 1 311 329 100 19 chr4 148224107 148224317 -36064345 + MIR SINE MIR 4 230 -32 268 290 60 0 chr4 148225002 148225102 -36063560 - Charlie8 DNA MER1_type -2308 109 4 24 0 0 0 chr4 148225166 148225190 -36063472 + AT_rich Low_complexity Low_complexity 1 24 0 5253 157 72 21 chr4 148225890 148227955 -36060707 + L1MA4 LINE L1 4122 6297 -3 191 308 0 0 chr4 148228565 148228617 -36060045 - L2 LINE L2 -5 3267 3216 451 291 174 35 chr4 148230555 148230785 -36057877 + MIR SINE MIR 1 262 0 343 208 89 30 chr4 148231783 148231884 -36056778 + L3 LINE CR1 1367 1473 -104 354 350 7 36 chr4 148231961 148232101 -36056561 - L2 LINE L2 -1 3271 3136 268 323 54 32 chr4 148232452 148232638 -36056024 - L2 LINE L2 -657 2657 2468 1042 181 97 40 chr4 148232769 148233067 -36055595 + MER33 DNA MER1_type 10 324 0 189 333 17 0 chr4 148233663 148233723 -36054939 + L3 LINE CR1 1515 1575 -2 374 195 203 0 chr4 148233854 148233972 -36054690 - L2 LINE L2 -3 3310 3169 355 248 15 66 chr4 148234046 148234183 -36054479 - MIR SINE MIR -24 238 109 441 326 70 0 chr4 148234536 148234665 -36053997 + L2 LINE L2 3134 3271 -1 369 307 123 34 chr4 148236261 148236472 -36052190 - MIR SINE MIR -32 230 5 382 285 182 12 chr4 148236730 148236895 -36051767 + L2 LINE L2 2576 2768 -546 1917 129 14 4 chr4 148237342 148237643 -36051019 - AluSx SINE Alu 0 304 1 277 261 70 52 chr4 148237817 148237932 -36050730 + L2 LINE L2 3156 3272 0 509 0 16 0 chr4 148238569 148238630 -36050032 + (TCTA)n Simple_repeat Simple_repeat 2 63 0 22 70 0 0 chr4 148239488 148239531 -36049131 + AT_rich Low_complexity Low_complexity 1 43 0 2088 156 49 40 chr4 148240239 148240668 -36047994 + Tigger2a DNA MER2_type 1 433 -1 26 0 0 0 chr4 148240958 148240984 -36047678 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr4 148241169 148241190 -36047472 + AT_rich Low_complexity Low_complexity 1 21 0 527 296 30 18 chr4 148242072 148242241 -36046421 + MIR SINE MIR 80 250 -12 333 0 0 0 chr4 148243100 148243137 -36045525 + (TG)n Simple_repeat Simple_repeat 2 38 0 5086 25 0 0 chr4 148244241 148244835 -36043827 + L1PA2 LINE L1 5562 6155 0 222 37 0 0 chr4 148245160 148245187 -36043475 + (CA)n Simple_repeat Simple_repeat 2 28 0 22 56 0 0 chr4 148246436 148246472 -36042190 + AT_rich Low_complexity Low_complexity 1 36 0 326 289 111 83 chr4 148247157 148247337 -36041325 + L2 LINE L2 3076 3260 -12 21 0 0 0 chr4 148247397 148247418 -36041244 + AT_rich Low_complexity Low_complexity 1 21 0 308 274 64 20 chr4 148247752 148247875 -36040787 + MIR SINE MIR 35 164 -44 1981 142 0 3 chr4 148248044 148248339 -36040323 - AluSq SINE Alu -19 294 1 1295 130 56 0 chr4 148248424 148248655 -36040007 + L1MA5A LINE L1 6050 6293 -4 36 40 0 0 chr4 148248656 148248706 -36039956 + AT_rich Low_complexity Low_complexity 1 50 0 277 278 53 73 chr4 148248813 148248964 -36039698 - L2 LINE L2 -44 3269 3122 2396 71 0 0 chr4 148249707 148250003 -36038659 - AluY SINE Alu -15 296 1 2592 109 2 15 chr4 148250882 148251284 -36037378 - Tigger4(Zombi) DNA MER2_type -2 2729 2333 1451 162 13 0 chr4 148251286 148251514 -36037148 - Tigger4(Zombi) DNA MER2_type -2500 231 1 1560 186 118 9 chr4 148251562 148252020 -36036642 - Charlie4a DNA MER1_type 0 508 1 830 212 0 30 chr4 148256988 148257153 -36031509 - FAM SINE Alu -15 160 1 1597 144 53 0 chr4 148257166 148257450 -36031212 - L1MA3 LINE L1 0 6305 6007 223 296 88 40 chr4 148257844 148257969 -36030693 - MIR SINE MIR -67 195 65 2055 130 0 13 chr4 148259592 148259899 -36028763 - AluY SINE Alu -8 303 1 239 396 52 7 chr4 148259960 148260114 -36028548 - MIR SINE MIR -68 194 34 385 333 47 23 chr4 148260449 148260620 -36028042 - MIR3 SINE MIR -1 207 33 2271 116 0 0 chr4 148261295 148261598 -36027064 + AluSx SINE Alu 1 303 -9 22 35 0 0 chr4 148261630 148261659 -36027003 + AT_rich Low_complexity Low_complexity 1 29 0 364 298 36 52 chr4 148263211 148263459 -36025203 - L2 LINE L2 -102 3211 2968 266 236 73 20 chr4 148264304 148264462 -36024200 + L1P5 LINE L1 5410 5581 -568 2689 125 26 7 chr4 148264536 148264951 -36023711 + MSTA LTR MaLR 6 428 0 313 295 108 0 chr4 148265051 148265180 -36023482 + L1ME3A LINE L1 5773 5915 -255 502 161 0 0 chr4 148266196 148266289 -36022373 - L1MB7 LINE L1 -16 6168 6076 3028 144 52 2 chr4 148266311 148266831 -36021831 - L1MB7 LINE L1 -255 5929 5384 1813 138 0 4 chr4 148267098 148267367 -36021295 + AluJo SINE Alu 33 300 -12 263 271 94 10 chr4 148268381 148268477 -36020185 - L2 LINE L2 0 3272 3169 255 234 109 26 chr4 148268477 148268662 -36020000 - MIR SINE MIR -2 260 5 1928 138 14 3 chr4 148269571 148269868 -36018794 + AluSg SINE Alu 4 303 -7 28 0 0 0 chr4 148270083 148270111 -36018551 + AT_rich Low_complexity Low_complexity 1 28 0 221 245 19 0 chr4 148271517 148271570 -36017092 + GA-rich Low_complexity Low_complexity 1 54 0 377 278 47 47 chr4 148272417 148272586 -36016076 - MIR3 SINE MIR -3 205 37 247 279 12 35 chr4 148272915 148273001 -36015661 + MLT1J2 LTR MaLR 59 142 -308 436 204 86 118 chr4 148273125 148273346 -36015316 + MLT1J LTR MaLR 277 490 -21 849 247 5 11 chr4 148274125 148274315 -36014347 - MER46A DNA MER2_type 0 236 48 2224 104 3 0 chr4 148277554 148277852 -36010810 + AluSx SINE Alu 4 302 -10 353 333 29 41 chr4 148279260 148279431 -36009231 + MER5B DNA MER1_type 1 169 -9 515 310 26 26 chr4 148279449 148279681 -36008981 - MER102a DNA MER1_type -13 317 86 1103 270 72 36 chr4 148279808 148280307 -36008355 + MLT1H LTR MaLR 2 549 0 1518 190 13 40 chr4 148280365 148280665 -36007997 + AluJb SINE Alu 3 294 -18 286 287 52 59 chr4 148280792 148280928 -36007734 + MLT1-int LTR MaLR 410 544 -827 309 262 36 0 chr4 148282822 148282906 -36005756 + MIR SINE MIR 32 118 -144 1320 190 95 64 chr4 148283271 148283724 -36004938 - MLT1C LTR MaLR 0 467 1 264 276 92 20 chr4 148284012 148284110 -36004552 - MIR SINE MIR -108 154 50 380 276 137 89 chr4 148284113 148284472 -36004190 - L2 LINE L2 0 3313 2938 189 342 66 33 chr4 148284489 148284641 -36004021 + L2 LINE L2 2797 2953 -361 288 111 0 0 chr4 148285131 148285176 -36003486 + (CA)n Simple_repeat Simple_repeat 2 46 0 2115 121 3 7 chr4 148285950 148286256 -36002406 + AluSg SINE Alu 1 305 -5 349 276 61 0 chr4 148286487 148286585 -36002077 - MIR SINE MIR -19 243 140 429 258 104 18 chr4 148286721 148286884 -36001778 + MLT1J LTR MaLR 3 179 -332 2383 80 3 0 chr4 148286914 148287214 -36001448 - AluY SINE Alu -10 301 1 264 214 180 34 chr4 148288088 148288177 -36000485 + L2 LINE L2 3196 3297 -16 24 0 0 0 chr4 148288300 148288324 -36000338 + AT_rich Low_complexity Low_complexity 1 24 0 242 192 0 39 chr4 148288464 148288516 -36000146 + (CATATA)n Simple_repeat Simple_repeat 2 51 0 187 305 144 25 chr4 148289440 148289558 -35999104 - MIR SINE MIR -111 151 20 1410 192 6 67 chr4 148291316 148291644 -35997018 + AluJo SINE Alu 3 310 -2 215 178 22 0 chr4 148291710 148291755 -35996907 + (TAA)n Simple_repeat Simple_repeat 2 47 0 277 312 70 32 chr4 148292007 148292164 -35996498 - L2 LINE L2 -437 2877 2715 631 261 82 15 chr4 148292467 148292662 -35996000 - MIR SINE MIR -21 241 34 993 240 148 29 chr4 148294150 148294662 -35994000 - L1ME4a LINE L1 -36 6085 5513 24 67 0 0 chr4 148295113 148295158 -35993504 + AT_rich Low_complexity Low_complexity 1 45 0 24 32 0 0 chr4 148296839 148296870 -35991792 + AT_rich Low_complexity Low_complexity 1 31 0 335 301 42 26 chr4 148297447 148297591 -35991071 + MIR SINE MIR 45 187 -68 189 0 0 0 chr4 148298274 148298295 -35990367 + (CA)n Simple_repeat Simple_repeat 1 21 0 601 297 81 31 chr4 148298842 148299608 -35989054 + L1ME3A LINE L1 5042 5864 -306 23 0 0 0 chr4 148299897 148299920 -35988742 + AT_rich Low_complexity Low_complexity 1 23 0 328 214 154 26 chr4 148301283 148301400 -35987262 - L1ME4a LINE L1 -15 6106 5975 26 0 0 0 chr4 148301495 148301521 -35987141 + AT_rich Low_complexity Low_complexity 1 26 0 944 213 64 34 chr4 148301764 148301999 -35986663 - MIR SINE MIR 0 262 21 305 289 0 78 chr4 148302138 148302230 -35986432 - L1ME4a LINE L1 -2361 5447 5368 2413 82 0 3 chr4 148302230 148302533 -35986129 - AluSq SINE Alu -11 302 1 305 289 0 78 chr4 148302533 148302582 -35986080 - L1ME4a LINE L1 -2440 5368 5317 212 250 0 0 chr4 148302734 148302774 -35985888 + (CATG)n Simple_repeat Simple_repeat 3 42 0 189 318 47 68 chr4 148303098 148303246 -35985416 - L3b LINE CR1 -88 1495 1351 540 249 81 34 chr4 148304146 148304359 -35984303 - MIR SINE MIR 0 262 37 390 291 45 36 chr4 148305648 148305868 -35982794 + MLT1K LTR MaLR 364 585 -3 2583 131 41 5 chr4 148306083 148306496 -35982166 + MSTA LTR MaLR 1 428 0 565 127 136 0 chr4 148306637 148306747 -35981915 - L1MB3 LINE L1 -9 6174 6050 642 304 87 19 chr4 148308166 148308563 -35980099 - L2 LINE L2 -228 3085 2664 280 326 0 21 chr4 148308580 148308675 -35979987 + MIR SINE MIR 54 146 -116 358 304 38 38 chr4 148309172 148309330 -35979332 + MIR3 SINE MIR 51 208 0 307 109 0 0 chr4 148309501 148309547 -35979115 + MADE1 DNA Mariner 35 80 0 1908 150 3 0 chr4 148309722 148310008 -35978654 - AluSx SINE Alu -2 310 24 915 203 98 40 chr4 148310491 148310767 -35977895 + L1MC4 LINE L1 6810 7101 -941 758 185 93 152 chr4 148310748 148311436 -35977226 + L1MD3 LINE L1 7240 7980 -15 * 30 27 0 0 chr4 148313173 148313210 -35975452 + AT_rich Low_complexity Low_complexity 1 37 0 266 194 51 92 chr4 148314084 148314182 -35974480 - MIR3 SINE MIR -33 175 82 2090 180 47 82 chr4 148314540 148315178 -35973484 - Charlie1 DNA MER1_type 0 2761 2146 313 274 85 20 chr4 148316190 148316343 -35972319 - MIR SINE MIR -1 261 99 316 298 97 17 chr4 148319827 148319991 -35968671 - MIR SINE MIR -56 206 25 394 322 9 0 chr4 148320423 148320538 -35968124 - L2 LINE L2 0 3272 3157 342 252 33 60 chr4 148320608 148320759 -35967903 - MIR SINE MIR -1 261 115 1304 138 19 5 chr4 148320815 148321025 -35967637 - MER20 DNA MER1_type -4 215 3 301 194 14 0 chr4 148521658 148521730 -35766932 + L1M3e LINE L1 2009 2081 -4949 212 344 66 33 chr4 148522211 148522362 -35766300 + L2 LINE L2 2892 3047 -225 1215 281 56 14 chr4 148522534 148523050 -35765612 + MER115 DNA AcHobo 108 693 0 318 328 9 0 chr4 148523919 148524035 -35764627 - L2 LINE L2 -14 3299 3183 421 308 17 0 chr4 148524057 148524177 -35764485 - L2 LINE L2 -1819 1495 1374 1718 152 22 0 chr4 148524513 148524815 -35763847 - AluSx SINE Alu 0 313 6 989 266 34 0 chr4 148525255 148525488 -35763174 - MIR SINE MIR -5 257 17 942 202 0 12 chr4 148525766 148525934 -35762728 - FRAM SINE Alu 0 166 1 366 328 50 22 chr4 148525980 148526160 -35762502 - L3 LINE CR1 -75 1502 1318 199 378 27 0 chr4 148526893 148526967 -35761695 - MIR SINE MIR -86 122 47 338 127 0 0 chr4 148527027 148527082 -35761580 + L1ME3 LINE L1 6106 6160 -2 211 299 215 19 chr4 148527235 148527342 -35761320 - MIR SINE MIR -115 147 20 252 182 28 149 chr4 148527472 148527653 -35761009 - MER113 DNA MER1_type? -358 163 5 858 313 24 27 chr4 148527771 148528363 -35760299 + L1M3a LINE L1 1 916 -5039 3743 166 57 65 chr4 148529050 148530011 -35758651 + LTR13 LTR ERVK 1 954 0 450 288 62 7 chr4 148530030 148530176 -35758486 - MIR SINE MIR -108 154 1 406 291 36 18 chr4 148530176 148530281 -35758381 + MIR SINE MIR 48 154 -108 2678 149 38 8 chr4 148530755 148531257 -35757405 + L1MB7 LINE L1 5625 6141 -43 1649 168 20 38 chr4 148531277 148531569 -35757093 - AluJo SINE Alu -23 289 3 490 231 71 26 chr4 148532580 148532763 -35755899 + MIR3 SINE MIR 14 207 -1 1684 175 0 31 chr4 148533225 148533545 -35755117 - AluJo SINE Alu -2 310 1 1691 172 61 22 chr4 148533792 148534153 -35754509 + THE1C LTR MaLR 1 375 0 22 0 0 0 chr4 148534827 148534849 -35753813 + AT_rich Low_complexity Low_complexity 1 22 0 1291 307 120 22 chr4 148535067 148535993 -35752669 - L2 LINE L2 -4 3309 2278 25 51 0 0 chr4 148536497 148536536 -35752126 + AT_rich Low_complexity Low_complexity 1 39 0 2458 55 0 36 chr4 148537404 148537713 -35750949 - AluY SINE Alu -13 298 1 353 273 7 97 chr4 148537951 148538105 -35750557 - MER5A DNA MER1_type -48 141 2 241 292 169 39 chr4 148538132 148538262 -35750400 - MIR3 SINE MIR -32 176 30 12465 103 5 8 chr4 148539152 148541782 -35746880 - L1PA8 LINE L1 0 6487 3862 11372 127 22 47 chr4 148541882 148544470 -35744192 - L1PA8 LINE L1 -3848 2613 5 1824 148 32 0 chr4 148544654 148544932 -35743730 + AluJb SINE Alu 2 288 -24 21 0 0 0 chr4 148544932 148544953 -35743709 + AT_rich Low_complexity Low_complexity 1 21 0 449 267 160 7 chr4 148545066 148545401 -35743261 - LTR16C LTR ERVL -2 489 80 314 281 96 26 chr4 148545432 148545735 -35742927 + L1ME4a LINE L1 5794 6117 -4 372 263 45 113 chr4 148546271 148546498 -35742164 - L1ME LINE L1 -1286 1204 893 2694 128 11 23 chr4 148546498 148546935 -35741727 + Tigger2a DNA MER2_type 2 433 -1 372 263 45 113 chr4 148546935 148547022 -35741640 - L1ME LINE L1 -1597 893 802 290 275 169 7 chr4 148547192 148547334 -35741328 - L1ME LINE L1 -5446 673 509 309 211 0 28 chr4 148548776 148548847 -35739815 - L2 LINE L2 -1 3312 3244 1931 128 122 15 chr4 148549819 148550148 -35738514 + THE1B LTR MaLR 1 364 0 11240 108 14 3 chr4 148550148 148551710 -35736952 + THE1B-int LTR MaLR 1 1580 0 1835 134 93 32 chr4 148551710 148552053 -35736609 + THE1B LTR MaLR 1 364 0 895 162 19 103 chr4 148552185 148552456 -35736206 - L1MB8 LINE L1 0 6178 5931 1423 181 12 4 chr4 148552523 148552766 -35735896 - AluJb SINE Alu -25 287 43 307 245 31 0 chr4 148553055 148553153 -35735509 - L1MEc LINE L1 -4749 1647 1547 23 0 0 0 chr4 148555388 148555411 -35733251 + AT_rich Low_complexity Low_complexity 1 23 0 234 206 16 16 chr4 148556657 148556720 -35731942 + CT-rich Low_complexity Low_complexity 1 63 0 716 283 44 80 chr4 148557743 148558107 -35730555 - MLT1J2 LTR MaLR -8 442 92 2312 138 71 84 chr4 148558118 148558727 -35729935 - LTR18B LTR ERVL -13 601 1 1296 234 32 32 chr4 148558730 148559102 -35729560 - MLT1A2 LTR MaLR -2 372 1 239 318 0 24 chr4 148559102 148559187 -35729475 - MLT1J1 LTR MaLR -363 83 1 2726 128 45 5 chr4 148559615 148560062 -35728600 - MER4C LTR ERV1 0 465 1 351 279 34 87 chr4 148560502 148560715 -35727947 + Charlie2 DNA MER1_type 26 218 -2644 333 0 0 0 chr4 148560715 148560752 -35727910 + (CA)n Simple_repeat Simple_repeat 2 38 0 351 279 34 87 chr4 148560752 148560860 -35727802 + Charlie2 DNA MER1_type 218 330 -2532 * 983 190 89 67 chr4 148560844 148561111 -35727551 + Charlie2 DNA MER1_type 1846 2124 -738 5889 134 25 32 chr4 148561111 148562190 -35726472 + MER11C LTR ERVK 1 1071 0 983 190 89 67 chr4 148562190 148562280 -35726382 + Charlie2 DNA MER1_type 2124 2211 -651 299 259 62 24 chr4 148562409 148562604 -35726058 - MLT1L LTR MaLR -340 275 4 426 287 112 5 chr4 148563039 148563227 -35725435 - MIR SINE MIR 0 262 55 288 262 255 7 chr4 148563342 148563483 -35725179 - MIR SINE MIR -15 247 72 2858 137 27 48 chr4 148563485 148564119 -35724543 + MER4B LTR ERV1 4 779 0 1210 75 16 5 chr4 148564470 148564656 -35724006 + L1PA13 LINE L1 1845 2032 -4755 2235 120 0 0 chr4 148565474 148565773 -35722889 - AluSx SINE Alu -8 304 6 545 282 83 11 chr4 148566958 148567139 -35721523 + MIR SINE MIR 20 213 -49 1406 223 65 8 chr4 148567149 148567503 -35721159 - MLT2B1 LTR ERVL -145 375 2 429 248 15 7 chr4 148568305 148568442 -35720220 - MER104 DNA Tc2 0 180 43 570 263 89 22 chr4 148568460 148568776 -35719886 - L1M4 LINE L1 -1165 4981 4645 665 262 82 21 chr4 148569073 148569355 -35719307 - L1M4 LINE L1 -1932 4214 3916 201 74 0 0 chr4 148569410 148569437 -35719225 + (TG)n Simple_repeat Simple_repeat 2 28 0 276 106 21 0 chr4 148569584 148569664 -35718998 - Alu SINE Alu 0 321 241 313 257 35 88 chr4 148569893 148570064 -35718598 + MLT1J LTR MaLR 1 198 -284 742 191 83 18 chr4 148570210 148570378 -35718284 - AluJo SINE Alu -13 299 121 3291 91 13 13 chr4 148570775 148571228 -35717434 + MLT2A2 LTR ERVL 1 453 0 354 218 119 20 chr4 148571525 148571626 -35717036 - MIR SINE MIR -1 261 151 2066 180 31 19 chr4 148571626 148572049 -35716613 + MSTA LTR MaLR 1 428 0 7095 171 24 16 chr4 148572049 148573687 -35714975 + MSTA-int LTR MaLR 1 1645 -6 861 150 15 0 chr4 148573692 148573825 -35714837 + MSTA LTR MaLR 1 135 -293 501 88 0 0 chr4 148573819 148573887 -35714775 + MSTA LTR MaLR 361 428 0 * 252 237 34 0 chr4 148573891 148573950 -35714712 - MIR SINE MIR -111 151 91 1576 204 89 72 chr4 148574308 148574661 -35714001 + MER69B DNA AcHobo 620 988 -1538 1450 203 30 0 chr4 148574661 148574927 -35713735 + AluJo SINE Alu 15 288 -24 1576 204 89 72 chr4 148574927 148575157 -35713505 + MER69B DNA AcHobo 988 1213 -13 301 253 111 19 chr4 148575562 148575724 -35712938 - MARNA DNA Mariner -214 372 196 208 356 35 11 chr4 148576555 148576642 -35712020 + L2 LINE L2 3209 3297 -16 223 360 27 9 chr4 148576905 148577016 -35711646 + L2 LINE L2 2791 2903 -411 1939 272 31 20 chr4 148578058 148578668 -35709994 - HERV16 LTR ERVL -4379 617 1 676 278 61 16 chr4 148578685 148578930 -35709732 - LTR16A LTR ERVL -16 434 179 523 290 90 35 chr4 148578941 148579196 -35709466 + L2 LINE L2 3045 3313 0 1749 199 0 0 chr4 148579589 148579891 -35708771 - AluJb SINE Alu -6 306 5 200 277 108 0 chr4 148579932 148579997 -35708665 - L2 LINE L2 -5 3267 3196 193 372 97 42 chr4 148580096 148580405 -35708257 - L2 LINE L2 -676 2638 2313 338 281 12 0 chr4 148580887 148580969 -35707693 + L2 LINE L2 3231 3313 0 2746 96 3 0 chr4 148581872 148582235 -35706427 + THE1B LTR MaLR 1 364 0 10421 104 10 58 chr4 148582235 148583895 -35704767 + THE1B-int LTR MaLR 1 1580 0 2380 110 30 0 chr4 148583897 148584232 -35704430 + THE1B LTR MaLR 3 347 -17 194 340 77 71 chr4 148585017 148585559 -35703103 + L2 LINE L2 2468 3010 -262 231 365 75 0 chr4 148585959 148586066 -35702596 + L2 LINE L2 3158 3272 0 1996 111 102 41 chr4 148586451 148586794 -35701868 - THE1B LTR MaLR 0 364 1 11402 98 13 5 chr4 148586794 148587276 -35701386 - THE1B-int LTR MaLR 0 1580 1103 4152 76 30 0 chr4 148587276 148587839 -35700823 + LTR19B LTR ERV1 1 580 0 11402 98 13 5 chr4 148587839 148588922 -35699740 - THE1B-int LTR MaLR -477 1103 2 1658 155 146 16 chr4 148588923 148589245 -35699417 - THE1B LTR MaLR 0 364 1 215 367 164 8 chr4 148589257 148589385 -35699277 + L2 LINE L2 3122 3269 -3 1631 197 3 3 chr4 148589738 148590048 -35698614 + AluSx SINE Alu 1 310 -2 3363 235 113 51 chr4 148590158 148591646 -35697016 - L1MC4a LINE L1 -353 5803 5664 256 290 77 24 chr4 148592028 148592197 -35696465 - HAL1b LINE L1 -503 845 668 5137 188 31 47 chr4 148592589 148593143 -35695519 - L1MB2 LINE L1 -1 6234 5672 2421 77 0 0 chr4 148593143 148593454 -35695208 - AluY SINE Alu 0 311 1 5137 188 31 47 chr4 148593454 148593827 -35694835 - L1MB2 LINE L1 -563 5672 5294 1650 95 51 0 chr4 148593827 148594080 -35694582 + L1MA1 LINE L1 6030 6295 -7 5137 188 31 47 chr4 148594080 148594834 -35693828 - L1MB2 LINE L1 -941 5294 4607 1625 158 60 8 chr4 148594834 148595135 -35693527 + AluSg SINE Alu 1 315 0 5137 188 31 47 chr4 148595135 148595748 -35692914 - L1MB2 LINE L1 -1628 4607 3985 1754 222 73 17 chr4 148595790 148596268 -35692394 + LTR22 LTR ERVK 1 505 -4 4365 126 6 2 chr4 148596279 148596912 -35691750 + HERVK22 LTR ERVK 124 759 -6078 835 215 0 6 chr4 148597325 148597488 -35691174 + HERVK22 LTR ERVK 2337 2498 -4339 * 11614 99 11 1 chr4 148597474 148599067 -35689595 + HERVK22 LTR ERVK 3471 5079 -1758 1593 195 0 10 chr4 148599037 148599454 -35689208 + HERVKC4 LTR ERVK 3172 6837 0 * 1876 196 79 17 chr4 148599454 148599933 -35688729 + LTR22 LTR ERVK 1 509 0 4251 223 63 32 chr4 148599936 148600161 -35688501 - L1MB2 LINE L1 -2354 3856 3639 2325 105 0 0 chr4 148600161 148600467 -35688195 - AluY SINE Alu -5 306 1 1617 190 0 24 chr4 148600477 148600772 -35687890 - AluJb SINE Alu -24 288 1 4251 223 63 32 chr4 148600772 148601888 -35686774 - L1MB2 LINE L1 -2579 3631 2462 219 105 53 0 chr4 148601893 148601950 -35686712 + (TA)n Simple_repeat Simple_repeat 1 60 0 245 296 72 0 chr4 148601950 148602075 -35686587 - L1MB2 LINE L1 -3743 2467 2334 * 1401 262 57 6 chr4 148602065 148602595 -35686067 - L1MB2 LINE L1 -4686 1455 899 435 173 13 0 chr4 148603023 148603098 -35685564 - L1MB2 LINE L1 -5815 316 241 21 0 0 0 chr4 148603463 148603484 -35685178 + AT_rich Low_complexity Low_complexity 1 21 0 535 267 72 38 chr4 148603737 148604133 -35684529 - ERVL LTR ERVL -2260 3504 3070 296 190 204 63 chr4 148604325 148604546 -35684116 - L1MC4a LINE L1 -1813 5995 5744 551 229 243 22 chr4 148604588 148604855 -35683807 - L1MC4a LINE L1 -2168 5640 5315 187 282 90 13 chr4 148605641 148605719 -35682943 - MIR SINE MIR -125 137 54 3240 95 32 4 chr4 148606505 148606969 -35681693 - L1PA8A LINE L1 -12 6119 5643 183 80 0 0 chr4 148609177 148609202 -35679460 + (A)n Simple_repeat Simple_repeat 1 25 0 2141 115 0 0 chr4 148609442 148609754 -35678908 - AluSq SINE Alu 0 317 6 204 40 0 0 chr4 148609760 148609785 -35678877 + (T)n Simple_repeat Simple_repeat 1 25 0 975 240 53 7 chr4 148610893 148611176 -35677486 - L1ME2 LINE L1 -6 6158 5863 1503 211 102 10 chr4 148611360 148611743 -35676919 - L1ME2 LINE L1 -285 5879 5462 387 397 10 0 chr4 148611957 148612151 -35676511 + MER117 DNA MER1_type 2 197 0 2620 190 60 14 chr4 148612560 148613122 -35675540 - L1MB7 LINE L1 -59 6125 5538 644 247 90 18 chr4 148613618 148613841 -35674821 + L1ME1 LINE L1 5923 6161 -5 302 213 40 27 chr4 148614038 148614113 -35674549 + MER103 DNA DNA 89 164 -2 420 222 74 9 chr4 148614852 148614960 -35673702 - MIR SINE MIR -77 185 71 503 304 107 40 chr4 148616815 148618198 -35670464 + L1MEc LINE L1 789 2263 -4133 274 156 173 123 chr4 148618182 148618303 -35670359 + L1MEc LINE L1 2898 3032 -3183 * 2354 100 3 0 chr4 148618303 148618614 -35670048 + AluSx SINE Alu 1 312 0 274 156 173 123 chr4 148618614 148618671 -35669991 + L1MEc LINE L1 3032 3085 -3130 287 281 35 18 chr4 148618694 148618808 -35669854 + L1MEc LINE L1 3597 3712 -2503 2496 255 123 39 chr4 148618820 148621060 -35667602 + L1MEc LINE L1 3773 6215 -24 202 152 22 22 chr4 148622492 148622538 -35666124 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 24 0 0 0 chr4 148622957 148622981 -35665681 + AT_rich Low_complexity Low_complexity 1 24 0 187 316 32 32 chr4 148623060 148623155 -35665507 - L2 LINE L2 -343 2970 2876 1981 136 0 0 chr4 148623954 148624233 -35664429 + AluSx SINE Alu 1 279 -33 417 20 0 0 chr4 148624233 148624283 -35664379 + (CA)n Simple_repeat Simple_repeat 1 50 0 822 271 68 9 chr4 148624441 148624662 -35664000 - MIR SINE MIR -9 253 20 279 260 164 10 chr4 148624848 148624952 -35663710 + L2 LINE L2 3189 3308 -5 23 33 0 0 chr4 148625231 148625261 -35663401 + AT_rich Low_complexity Low_complexity 1 30 0 709 324 88 15 chr4 148625284 148625614 -35663048 - L3 LINE CR1 -170 1407 1054 297 270 88 25 chr4 148625780 148625939 -35662723 - L1ME3A LINE L1 -23 6147 5979 246 175 18 0 chr4 148626720 148626777 -35661885 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 362 238 12 0 chr4 148628284 148628364 -35660298 - U2 snRNA snRNA -103 85 5 22 0 0 0 chr4 148629261 148629283 -35659379 + AT_rich Low_complexity Low_complexity 1 22 0 254 374 30 42 chr4 148629509 148629675 -35658987 - MIR3 SINE MIR -37 171 8 229 321 61 38 chr4 148630969 148631100 -35657562 + L2 LINE L2 3171 3304 -9 180 0 0 0 chr4 148631100 148631120 -35657542 + (A)n Simple_repeat Simple_repeat 1 20 0 2618 148 9 0 chr4 148631706 148632126 -35656536 - MSTA LTR MaLR -4 424 1 2480 51 0 10 chr4 148632204 148632516 -35656146 - AluY SINE Alu -2 309 1 21 0 0 0 chr4 148633009 148633030 -35655632 + AT_rich Low_complexity Low_complexity 1 21 0 1893 115 8 0 chr4 148634691 148634952 -35653710 + AluSx SINE Alu 36 298 -14 2166 103 0 38 chr4 148635864 148636184 -35652478 + AluY SINE Alu 1 308 -3 746 288 287 11 chr4 148638191 148638666 -35649996 - L2 LINE L2 -4 3309 2676 245 252 19 29 chr4 148639421 148639524 -35649138 + GA-rich Low_complexity Low_complexity 3 104 0 200 366 98 49 chr4 148639652 148639762 -35648900 + L2 LINE L2 2421 2524 -790 1749 158 3 34 chr4 148639762 148640059 -35648603 - AluJb SINE Alu -24 288 1 200 366 98 49 chr4 148640059 148640254 -35648408 + L2 LINE L2 2524 2741 -573 506 165 0 22 chr4 148640339 148640430 -35648232 + AluJb SINE Alu 205 293 -19 676 261 72 28 chr4 148640579 148640828 -35647834 + MIR SINE MIR 3 262 0 772 331 54 39 chr4 148640889 148641297 -35647365 - L2 LINE L2 0 3313 2900 1353 221 133 2 chr4 148641328 148641470 -35647192 - L2 LINE L2 -532 2782 2660 2216 84 0 0 chr4 148641470 148641757 -35646905 + AluY SINE Alu 16 302 -9 1353 221 133 2 chr4 148641757 148642013 -35646649 - L2 LINE L2 -654 2660 2332 350 275 147 77 chr4 148642026 148642299 -35646363 - MER102b DNA MER1_type -12 329 38 331 311 48 0 chr4 148642313 148642416 -35646246 + L2 LINE L2 3154 3261 -11 688 299 99 32 chr4 148642453 148642857 -35645805 + L1MC4a LINE L1 5525 5955 -166 258 350 157 16 chr4 148643011 148643250 -35645412 + L2 LINE L2 2736 3012 -260 186 260 20 0 chr4 148643545 148643595 -35645067 + MIR SINE MIR 92 142 -66 240 379 91 17 chr4 148643609 148643841 -35644821 - MIR SINE MIR -11 251 3 462 364 91 11 chr4 148644097 148644383 -35644279 - L3 LINE CR1 -13 1564 1256 1084 152 53 0 chr4 148644389 148644560 -35644102 - AluJb SINE Alu -132 180 1 1168 120 0 57 chr4 148645456 148645564 -35643098 - U2 snRNA snRNA -3 185 91 18861 48 20 2 chr4 148645564 148648730 -35639932 + L1PA5 LINE L1 2952 6151 -3 1168 120 0 57 chr4 148648730 148648813 -35639849 - U2 snRNA snRNA -97 91 5 2228 110 0 0 chr4 148648996 148649288 -35639374 - AluSg SINE Alu -18 292 1 2091 124 0 7 chr4 148649546 148649836 -35638826 + AluSx SINE Alu 1 288 -24 194 330 136 19 chr4 148650012 148650115 -35638547 - MIR3 SINE MIR -17 191 77 267 270 52 17 chr4 148650147 148650262 -35638400 + ERVL LTR ERVL 2667 2785 -2979 410 104 134 0 chr4 148650348 148650415 -35638247 - MADE1 DNA Mariner -2 78 3 2147 87 10 13 chr4 148653153 148653462 -35635200 + AluSc SINE Alu 1 308 -1 191 306 108 9 chr4 148653536 148653647 -35635015 - MIR3 SINE MIR -2 206 85 28 48 0 0 chr4 148655592 148655634 -35633028 + AT_rich Low_complexity Low_complexity 1 42 0 540 259 127 0 chr4 148655729 148655887 -35632775 - MIR SINE MIR -16 246 69 197 333 0 0 chr4 148655959 148656007 -35632655 + L2 LINE L2 3255 3302 -11 1203 112 0 18 chr4 148657013 148657183 -35631479 + FRAM SINE Alu 1 166 -10 22 35 0 0 chr4 148658066 148658095 -35630567 + AT_rich Low_complexity Low_complexity 1 29 0 282 322 8 34 chr4 148658352 148658470 -35630192 - MIR3 SINE MIR -88 120 6 30630 50 14 1 chr4 148659463 148664179 -35624483 + L1PA5 LINE L1 1393 6154 0 595 240 82 69 chr4 148664748 148664981 -35623681 - MLT1I LTR MaLR 0 409 174 1658 163 61 36 chr4 148665668 148666031 -35622631 + THE1C LTR MaLR 1 372 -3 22 0 0 0 chr4 148666417 148666439 -35622223 + AT_rich Low_complexity Low_complexity 1 22 0 282 29 0 0 chr4 148667186 148667221 -35621441 + (CA)n Simple_repeat Simple_repeat 2 36 0 380 325 84 9 chr4 148667310 148667633 -35621029 - HAL1 LINE L1 -806 1701 1355 961 263 15 23 chr4 148667843 148668102 -35620560 - MIR SINE MIR 0 262 6 23 0 0 0 chr4 148669522 148669545 -35619117 + AT_rich Low_complexity Low_complexity 1 23 0 1678 131 62 66 chr4 148669619 148669924 -35618738 + AluSp SINE Alu 1 304 -9 605 250 32 0 chr4 148669928 148670084 -35618578 - MIR SINE MIR 0 262 102 305 247 10 41 chr4 148670503 148670600 -35618062 - L1MC4 LINE L1 -1340 6702 6609 23 0 0 0 chr4 148671082 148671105 -35617557 + AT_rich Low_complexity Low_complexity 1 23 0 731 269 160 52 chr4 148671229 148671672 -35616990 - MLT1J LTR MaLR -13 498 8 250 326 0 22 chr4 148671672 148671764 -35616898 - MER5A DNA MER1_type -91 98 9 21 0 0 0 chr4 148671905 148671926 -35616736 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr4 148672274 148672301 -35616361 + (A)n Simple_repeat Simple_repeat 1 27 0 314 223 157 25 chr4 148672723 148672844 -35615818 - MIR SINE MIR -10 252 116 28 29 0 0 chr4 148673171 148673206 -35615456 + AT_rich Low_complexity Low_complexity 1 35 0 1620 202 3 0 chr4 148674093 148674375 -35614287 - AluJo SINE Alu -29 283 1 1655 180 77 9 chr4 148675368 148675547 -35613115 - MLT1A2 LTR MaLR 0 374 209 240 35 0 0 chr4 148675547 148675576 -35613086 + (GA)n Simple_repeat Simple_repeat 2 30 0 1655 180 77 9 chr4 148675576 148675746 -35612916 - MLT1A2 LTR MaLR -165 209 1 249 400 53 0 chr4 148676023 148676173 -35612489 + MIR SINE MIR 3 160 -102 311 340 50 0 chr4 148676378 148676478 -35612184 + L2 LINE L2 3163 3267 -5 27 0 0 0 chr4 148677547 148677574 -35611088 + AT_rich Low_complexity Low_complexity 1 27 0 237 291 116 74 chr4 148679437 148679911 -35608751 + L2 LINE L2 1888 2381 -933 336 248 157 33 chr4 148679984 148680137 -35608525 + LTR33A LTR ERVL 1 172 -351 973 198 12 82 chr4 148681951 148682183 -35606479 + MER8 DNA MER2_type 1 215 -24 1760 196 0 0 chr4 148682183 148682484 -35606178 + AluJo SINE Alu 2 302 -10 973 198 12 82 chr4 148682484 148682508 -35606154 + MER8 DNA MER2_type 215 239 0 200 200 22 0 chr4 148683620 148683665 -35604997 - MIR SINE MIR -29 233 188 * 219 370 0 0 chr4 148683653 148683734 -35604928 + L2 LINE L2 2932 3012 -260 224 301 108 24 chr4 148683848 148683931 -35604731 + L2 LINE L2 3147 3236 -36 2467 71 7 0 chr4 148684171 148684480 -35604182 - AluY SINE Alu 0 311 1 42 48 0 0 chr4 148685250 148685313 -35603349 + AT_rich Low_complexity Low_complexity 1 63 0 28 0 0 0 chr4 148685629 148685657 -35603005 + AT_rich Low_complexity Low_complexity 1 28 0 193 357 0 0 chr4 148687612 148687668 -35600994 + MIR SINE MIR 42 97 -165 2598 54 0 10 chr4 148690614 148690928 -35597734 + AluY SINE Alu 1 311 0 1834 90 24 55 chr4 148692416 148692731 -35595931 - AluSx SINE Alu 0 306 1 264 30 0 0 chr4 148693047 148693080 -35595582 + (TTTTTA)n Simple_repeat Simple_repeat 2 34 0 274 221 15 0 chr4 148694104 148694172 -35594490 + (TA)n Simple_repeat Simple_repeat 2 70 0 580 228 203 10 chr4 148695649 148695846 -35592816 - MIR SINE MIR 0 262 28 210 329 29 14 chr4 148695887 148695957 -35592705 - L2 LINE L2 -3 3269 3199 224 159 23 0 chr4 148696736 148696780 -35591882 + (TTG)n Simple_repeat Simple_repeat 2 46 0 380 317 79 12 chr4 148696902 148697075 -35591587 + MIR SINE MIR 17 201 -61 1383 71 38 9 chr4 148698557 148698769 -35589893 - L1MA5A LINE L1 -4 6293 6076 2253 104 7 0 chr4 148699135 148699432 -35589230 - AluSc SINE Alu -5 304 6 2192 115 51 28 chr4 148699713 148700069 -35588593 - THE1B LTR MaLR 0 364 1 30 69 0 0 chr4 148701339 148701397 -35587265 + AT_rich Low_complexity Low_complexity 1 58 0 1008 198 48 32 chr4 148701533 148701785 -35586877 + MIR SINE MIR 3 258 -4 334 356 76 58 chr4 148701920 148702249 -35586413 - L2 LINE L2 -4 3268 2934 673 310 155 27 chr4 148702334 148703242 -35585420 - L2 LINE L2 -492 2822 1745 1612 189 19 29 chr4 148703299 148703612 -35585050 - AluJb SINE Alu -2 310 1 189 0 0 0 chr4 148703701 148703722 -35584940 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 312 209 18 91 chr4 148704856 148704966 -35583696 + L1MC4 LINE L1 6602 6703 -1339 306 168 0 47 chr4 148704969 148705076 -35583586 + (TA)n Simple_repeat Simple_repeat 1 102 0 22 0 0 0 chr4 148706156 148706178 -35582484 + AT_rich Low_complexity Low_complexity 1 22 0 420 260 66 28 chr4 148706191 148706372 -35582290 - MER5A DNA MER1_type -1 188 1 2034 222 48 24 chr4 148707470 148708095 -35580567 - L1MC4 LINE L1 -5 8037 7398 2244 184 66 51 chr4 148708095 148708683 -35579979 + MER90 LTR ERV1 18 614 0 2672 225 38 40 chr4 148708686 148709133 -35579529 - L1MC4 LINE L1 -657 7385 6939 315 0 0 0 chr4 148709133 148709168 -35579494 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1334 145 111 34 chr4 148709170 148709432 -35579230 - AluJo SINE Alu -30 282 1 2672 225 38 40 chr4 148709432 148709817 -35578845 - L1MC4 LINE L1 -1104 6938 6551 360 64 0 0 chr4 148710594 148710641 -35578021 + (CA)n Simple_repeat Simple_repeat 2 48 0 1437 171 96 0 chr4 148710665 148710946 -35577716 - AluJo SINE Alu -4 308 1 541 76 13 0 chr4 148711627 148711706 -35576956 - MADE1 DNA Mariner 0 80 1 2211 107 3 0 chr4 148711913 148712204 -35576458 - AluSg SINE Alu -18 292 1 398 273 109 0 chr4 148713458 148713568 -35575094 + MIR SINE MIR 8 129 -133 236 269 75 32 chr4 148713899 148713992 -35574670 - L2 LINE L2 -49 3264 3168 215 59 0 29 chr4 148714226 148714260 -35574402 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 21 36 0 0 chr4 148714397 148714425 -35574237 + AT_rich Low_complexity Low_complexity 1 28 0 228 383 39 0 chr4 148714524 148714652 -35574010 + L3b LINE CR1 1105 1237 -346 380 268 232 0 chr4 148714780 148714918 -35573744 + MER5A DNA MER1_type 9 178 -11 366 295 33 16 chr4 148715450 148715572 -35573090 + MIR SINE MIR 135 258 -4 263 137 0 20 chr4 148715747 148715798 -35572864 + (CA)n Simple_repeat Simple_repeat 2 51 0 26 0 0 0 chr4 148715932 148715958 -35572704 + AT_rich Low_complexity Low_complexity 1 26 0 684 246 118 80 chr4 148717453 148718014 -35570648 - MER34C LTR ERV1 0 585 4 224 301 71 44 chr4 148718839 148718952 -35569710 - L2 LINE L2 -4 3268 3153 227 359 38 19 chr4 148718987 148719093 -35569569 - L2 LINE L2 -44 3228 3121 368 203 17 85 chr4 148720197 148720268 -35568394 - MER20B DNA MER1_type -611 172 111 2256 192 29 7 chr4 148720268 148720685 -35567977 - MSTB LTR MaLR 0 426 1 368 203 17 85 chr4 148720685 148720731 -35567931 - MER20B DNA MER1_type -672 111 63 23 0 0 0 chr4 148722198 148722221 -35566441 + AT_rich Low_complexity Low_complexity 1 23 0 1009 103 0 58 chr4 148722354 148722510 -35566152 - AluSg/x SINE Alu -12 300 154 525 143 0 10 chr4 148723384 148723482 -35565180 + MER53 DNA DNA 93 189 0 297 336 60 9 chr4 148723627 148723743 -35564919 + L2 LINE L2 3187 3308 -5 632 244 0 0 chr4 148725454 148725589 -35563073 + Tigger6a DNA MER2_type 2 136 -947 * 2186 153 73 42 chr4 148725582 148726033 -35562629 + Tigger6a DNA MER2_type 256 720 -363 2358 71 7 0 chr4 148726765 148727059 -35561603 + AluY SINE Alu 1 296 -15 192 304 54 54 chr4 148727719 148727831 -35560831 + L2 LINE L2 3186 3297 -16 5650 44 1 13 chr4 148729020 148729726 -35558936 - L1PA6 LINE L1 -4 6150 5453 272 298 83 14 chr4 148729728 148730017 -35558645 + L1ME LINE L1 1230 1538 -4858 6167 186 28 17 chr4 148730098 148732140 -35556522 - L1MC1 LINE L1 -1 6332 4263 1861 161 7 13 chr4 148732140 148732445 -35556217 - AluJo SINE Alu -9 303 1 6167 186 28 17 chr4 148732445 148732668 -35555994 - L1MC1 LINE L1 -2070 4263 4044 258 211 18 0 chr4 148732910 148732967 -35555695 - L1ME3 LINE L1 -7 6155 6098 234 122 0 0 chr4 148732983 148733024 -35555638 + LTR66 LTR ERVL 398 438 -172 441 269 104 15 chr4 148733135 148733336 -35555326 + L1ME LINE L1 3757 3975 -2240 354 268 122 48 chr4 148733407 148733881 -35554781 + L1ME LINE L1 5074 5626 -613 1974 183 15 0 chr4 148733881 148734220 -35554442 - MER2 DNA MER2_type 0 344 1 354 268 122 48 chr4 148734220 148734306 -35554356 + L1ME LINE L1 5626 5704 -535 2649 193 78 24 chr4 148734407 148734474 -35554188 - L1ME3 LINE L1 -462 5850 5788 186 43 0 0 chr4 148734474 148734497 -35554165 + (TATATG)n Simple_repeat Simple_repeat 2 24 0 2649 193 78 24 chr4 148734497 148735522 -35553140 - L1ME3 LINE L1 -524 5788 4698 761 182 136 47 chr4 148737177 148737391 -35551271 + MIR SINE MIR 15 247 -15 300 365 62 14 chr4 148738368 148738576 -35550086 + L2 LINE L2 2818 3035 -237 448 256 159 67 chr4 148739013 148739372 -35549290 - MLT1L LTR MaLR -221 394 3 505 339 31 10 chr4 148739382 148739574 -35549088 + MIR SINE MIR 10 205 -57 473 202 106 0 chr4 148739595 148739699 -35548963 - L2 LINE L2 0 3313 3199 2442 76 0 16 chr4 148739796 148740111 -35548551 - AluY SINE Alu -1 310 1 443 252 84 0 chr4 148740184 148740291 -35548371 - L2 LINE L2 0 3313 3198 6567 149 8 5 chr4 148740480 148741627 -35547035 + L1MC1 LINE L1 5183 6331 -2 265 230 95 14 chr4 148742125 148742199 -35546463 + MLT1H LTR MaLR 96 175 -374 375 23 0 0 chr4 148743246 148743290 -35545372 + (TG)n Simple_repeat Simple_repeat 2 45 0 527 234 78 6 chr4 148743462 148743629 -35545033 + MER20B DNA MER1_type 603 781 -2 794 196 7 0 chr4 148743711 148743859 -35544803 - MER3 DNA MER1_type -54 155 7 230 253 108 0 chr4 148744000 148744083 -35544579 + L1ME LINE L1 5864 5955 -278 24 67 0 0 chr4 148744335 148744380 -35544282 + AT_rich Low_complexity Low_complexity 1 45 0 508 214 39 0 chr4 148744397 148744500 -35544162 + L2 LINE L2 3199 3305 -8 1645 163 3 62 chr4 148744608 148744915 -35543747 - AluJo SINE Alu -20 292 4 1893 271 150 17 chr4 148744936 148745976 -35542686 - L2 LINE L2 0 3313 2139 1132 157 0 0 chr4 148746456 148746628 -35542034 + FAM SINE Alu 2 173 -2 4224 141 36 5 chr4 148747491 148748244 -35540418 + L1MA4 LINE L1 5523 6298 -2 494 285 51 22 chr4 148748666 148748803 -35539859 - MIR3 SINE MIR -34 174 34 683 334 180 36 chr4 148751573 148752540 -35536122 - L2 LINE L2 0 3313 2227 941 220 52 81 chr4 148752547 148752599 -35536063 - Charlie4a DNA MER1_type -1478 483 431 2222 95 0 33 chr4 148752599 148752905 -35535757 - AluY SINE Alu -15 296 1 941 220 52 81 chr4 148752905 148753274 -35535388 - Charlie4a DNA MER1_type -1530 431 74 868 278 125 12 chr4 148753298 148753633 -35535029 - L2 LINE L2 -1816 1498 1126 1952 132 0 0 chr4 148754850 148755123 -35533539 + AluSx SINE Alu 1 273 -39 474 243 63 78 chr4 148755126 148755509 -35533153 + L1MC4 LINE L1 7666 8042 0 24 32 0 0 chr4 148755603 148755634 -35533028 + AT_rich Low_complexity Low_complexity 1 31 0 654 187 82 0 chr4 148855646 148855780 -35432882 - MER1B DNA MER1_type -152 145 1 312 120 0 0 chr4 148855904 148855954 -35432708 + (CA)n Simple_repeat Simple_repeat 1 50 0 1983 104 0 35 chr4 148857557 148857844 -35430818 - AluSx SINE Alu -13 299 23 1163 202 14 14 chr4 148857941 148858164 -35430498 - AluJo SINE Alu -25 287 65 180 152 0 0 chr4 148858306 148858339 -35430323 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 256 330 0 0 chr4 148858484 148858572 -35430090 + T-rich Low_complexity Low_complexity 1 88 0 211 319 30 47 chr4 148858592 148858761 -35429901 - L2 LINE L2 -1346 1968 1803 240 184 0 0 chr4 148859360 148859409 -35429253 + (TG)n Simple_repeat Simple_repeat 2 50 0 256 314 8 83 chr4 148859868 148859989 -35428673 - MIR SINE MIR -125 137 26 291 232 0 0 chr4 148860446 148860528 -35428134 + (TA)n Simple_repeat Simple_repeat 1 82 0 1765 188 39 0 chr4 148861679 148862014 -35426648 + MER7A DNA MER2_type 1 346 0 291 232 0 0 chr4 148862692 148862774 -35425888 + (TA)n Simple_repeat Simple_repeat 1 82 0 197 376 10 20 chr4 148863244 148863345 -35425317 + MIR SINE MIR 37 136 -126 195 327 119 20 chr4 148865396 148865497 -35423165 + MIR SINE MIR 30 140 -68 365 313 78 39 chr4 148865595 148865774 -35422888 + MIR3 SINE MIR 13 198 -10 579 239 0 8 chr4 148866303 148866420 -35422242 + L2 LINE L2 3197 3312 -1 532 115 0 11 chr4 148866639 148866726 -35421936 + L1PA16 LINE L1 6077 6162 -4 2454 150 36 18 chr4 148867168 148867674 -35420988 + L1MA7 LINE L1 5752 6266 -25 517 308 5 40 chr4 148868519 148868743 -35419919 - L1M2c LINE L1 -4560 2608 2393 230 49 0 0 chr4 148868743 148868784 -35419878 - Alu SINE Alu 0 301 261 * 277 211 0 0 chr4 148868771 148868823 -35419839 - AluJ/monomer SINE Alu -249 53 2 7076 202 21 5 chr4 148868845 148870392 -35418270 - L1M2c LINE L1 -4768 2400 800 2026 188 3 0 chr4 148870398 148870775 -35417887 - L1M2c LINE L1 -6778 390 13 22 80 0 0 chr4 148870818 148870868 -35417794 + AT_rich Low_complexity Low_complexity 1 50 0 23 78 0 0 chr4 148871605 148871656 -35417006 + AT_rich Low_complexity Low_complexity 1 51 0 6477 152 6 7 chr4 148871656 148873248 -35415414 - L1MA3 LINE L1 0 6305 4715 1018 149 0 6 chr4 148873348 148873516 -35415146 - AluSc SINE Alu -142 167 1 312 203 0 0 chr4 148873523 148873582 -35415080 + MLT1E LTR MaLR 535 593 0 303 280 30 10 chr4 148873869 148873969 -35414693 + L1ME3A LINE L1 5845 5946 -224 1417 207 50 7 chr4 148873974 148874254 -35414408 + AluJb SINE Alu 1 292 -20 2304 196 19 14 chr4 148874524 148875040 -35413622 + L1MC3 LINE L1 7259 7777 -8 1738 331 159 11 chr4 148875210 148876464 -35412198 + L2 LINE L2 1658 3095 -177 1117 227 78 18 chr4 148876586 148876945 -35411717 - L1MB8 LINE L1 -16 6162 5784 207 255 296 10 chr4 148876950 148877048 -35411614 + L2 LINE L2 3179 3304 -9 570 218 0 0 chr4 148877355 148877456 -35411206 - MER5A DNA MER1_type -80 109 9 477 253 112 0 chr4 148879266 148879507 -35409155 + Charlie2 DNA MER1_type 2344 2611 -251 492 171 0 23 chr4 148880089 148880218 -35408444 + (TA)n Simple_repeat Simple_repeat 2 127 0 372 22 0 0 chr4 148880235 148880280 -35408382 + (CA)n Simple_repeat Simple_repeat 2 46 0 2203 122 0 0 chr4 148880282 148880578 -35408084 - AluSq SINE Alu -15 298 3 515 206 74 21 chr4 148880599 148880788 -35407874 + Charlie2 DNA MER1_type 2648 2846 -16 655 205 109 55 chr4 148881072 148881384 -35407278 + LTR37A LTR ERV1 97 425 -1 267 290 28 9 chr4 148881391 148881498 -35407164 - L2 LINE L2 -1054 2260 2152 22 0 0 0 chr4 148881791 148881813 -35406849 + AT_rich Low_complexity Low_complexity 1 22 0 746 104 38 0 chr4 148881820 148881963 -35406699 + AluSg/x SINE Alu 172 318 0 36 0 0 0 chr4 148882337 148882373 -35406289 + AT_rich Low_complexity Low_complexity 1 36 0 223 378 54 0 chr4 148884422 148884496 -35404166 - L2 LINE L2 -39 3233 3156 244 258 8 42 chr4 148884522 148884642 -35404020 + (TTATA)n Simple_repeat Simple_repeat 5 120 0 240 184 0 0 chr4 148885274 148885323 -35403339 + (CA)n Simple_repeat Simple_repeat 2 50 0 198 398 92 10 chr4 148885396 148885602 -35403060 + L2 LINE L2 985 1207 -2107 202 333 27 48 chr4 148885926 148886112 -35402550 + L2 LINE L2 1803 1984 -1330 256 330 0 0 chr4 148886116 148886204 -35402458 + A-rich Low_complexity Low_complexity 1 88 0 205 156 0 0 chr4 148886350 148886382 -35402280 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 333 303 9 18 chr4 148886605 148886714 -35401948 - L2 LINE L2 -36 3277 3170 582 340 50 0 chr4 148886837 148887037 -35401625 + L2 LINE L2 2764 2973 -341 685 254 54 5 chr4 148887051 148887256 -35401406 + LTR50 LTR ERVL 1 215 -580 304 243 65 19 chr4 148888049 148888156 -35400506 + ERVL LTR ERVL 996 1107 -4657 271 237 0 0 chr4 148888318 148888377 -35400285 + ERVL LTR ERVL 1274 1332 -4432 291 230 31 87 chr4 148888894 148889055 -35399607 + L1MC5 LINE L1 5775 5926 -1882 250 271 71 18 chr4 148889062 148889232 -35399430 + L1ME3A LINE L1 4625 4803 -1343 1308 214 67 60 chr4 148889319 148890388 -35398274 + L1ME3A LINE L1 5009 6165 -5 733 240 14 68 chr4 148890397 148890777 -35397885 + L1MC5 LINE L1 6864 7198 -763 698 246 115 30 chr4 148890823 148891327 -35397335 + L1MC5 LINE L1 7311 7857 -104 290 319 38 47 chr4 148891716 148891929 -35396733 + L2 LINE L2 2004 2214 -1100 330 326 151 12 chr4 148892157 148892329 -35396333 + MER91A DNA MER1_type 1 196 0 442 204 9 9 chr4 148892546 148892654 -35396008 + GA-rich Low_complexity Low_complexity 1 108 0 451 332 67 12 chr4 148893621 148893964 -35394698 + L1ME2 LINE L1 44 405 -5991 478 262 68 40 chr4 148894232 148894556 -35394106 + L1ME2 LINE L1 694 1026 -5179 249 319 12 79 chr4 148894560 148894887 -35393775 + L1ME2 LINE L1 1003 1308 -4909 2131 113 3 13 chr4 148894887 148895198 -35393464 - AluSq SINE Alu -1 312 5 249 319 12 79 chr4 148895198 148895212 -35393450 + L1ME2 LINE L1 1308 1321 -4896 3010 255 112 21 chr4 148895325 148897362 -35391300 + L1ME2 LINE L1 2389 4599 -1616 238 120 60 0 chr4 148897462 148897512 -35391150 - THE1-int LTR MaLR -91 1489 1437 953 123 39 0 chr4 148897512 148897667 -35390995 + THE1B LTR MaLR 202 362 -2 1471 249 49 68 chr4 148897667 148898188 -35390474 + L1ME2 LINE L1 4599 5105 -1110 1982 121 0 4 chr4 148898188 148898453 -35390209 - AluSx SINE Alu -48 264 1 1471 249 49 68 chr4 148898453 148898641 -35390021 + L1ME2 LINE L1 5105 5295 -920 * 1813 220 131 7 chr4 148898640 148899241 -35389421 + L1ME2 LINE L1 5549 6224 -9 2612 34 0 0 chr4 148899846 148900142 -35388520 - AluY SINE Alu -15 296 1 264 30 0 0 chr4 148901038 148901071 -35387591 + (GGAA)n Simple_repeat Simple_repeat 3 35 0 473 273 121 10 chr4 148901086 148901284 -35387378 - MIR SINE MIR -37 225 6 335 198 60 20 chr4 148901737 148901878 -35386784 - MLT1J2 LTR MaLR -190 219 71 963 163 17 113 chr4 148902388 148902627 -35386035 + MER20 DNA MER1_type 4 219 0 4348 185 12 2 chr4 148903877 148904776 -35383886 + L1 LINE L1 4081 4988 -1158 5179 133 41 6 chr4 148904830 148905987 -35382675 + L1PA16 LINE L1 4976 6165 -1 673 261 118 35 chr4 148906681 148906968 -35381694 + L2 LINE L2 1865 2175 -1139 1015 174 124 159 chr4 148906971 148907424 -35381238 + MLT1D LTR MaLR 1 468 -37 4901 37 3 2 chr4 148907424 148908019 -35380643 - L1PA4 LINE L1 -2 6153 5558 1792 137 4 26 chr4 148908019 148908290 -35380372 - AluSc SINE Alu -44 265 1 1015 174 124 159 chr4 148908290 148908358 -35380304 + MLT1D LTR MaLR 466 505 0 350 224 128 46 chr4 148908358 148908577 -35380085 + L2 LINE L2 2174 2410 -904 992 289 57 46 chr4 148908592 148909230 -35379432 + L2 LINE L2 2654 3313 0 594 313 103 45 chr4 148909750 148910392 -35378270 + L1ME4a LINE L1 4686 5364 -782 28 0 0 0 chr4 148910415 148910443 -35378219 + AT_rich Low_complexity Low_complexity 1 28 0 233 241 195 23 chr4 148910685 148910992 -35377670 + L1ME4a LINE L1 5738 6097 -24 2348 84 0 0 chr4 148910993 148911292 -35377370 - AluY SINE Alu -12 299 1 1491 196 32 16 chr4 148911514 148911825 -35376837 - MER58B DNA MER1_type -25 316 1 180 0 0 0 chr4 148912015 148912035 -35376627 + (TA)n Simple_repeat Simple_repeat 1 20 0 31 0 0 0 chr4 148912582 148912613 -35376049 + AT_rich Low_complexity Low_complexity 1 31 0 2389 22 0 0 chr4 148912613 148912891 -35375771 - L1PA2 LINE L1 0 6155 5878 294 73 0 0 chr4 148913001 148913042 -35375620 + (CA)n Simple_repeat Simple_repeat 1 41 0 536 314 12 0 chr4 148913738 148913907 -35374755 + L2 LINE L2 2144 2314 -1000 307 345 121 42 chr4 148916467 148916914 -35371748 + L1M2 LINE L1 596 1077 -5772 201 147 0 0 chr4 148917392 148917426 -35371236 + (GGGA)n Simple_repeat Simple_repeat 1 34 0 1438 150 32 99 chr4 148918882 148919196 -35369466 - AluJo SINE Alu -19 293 1 496 270 223 45 chr4 148919204 148919746 -35368916 + L2 LINE L2 2670 3304 -9 2601 102 86 0 chr4 148919944 148920338 -35368324 - MSTA LTR MaLR 0 428 1 198 327 115 22 chr4 148921077 148921303 -35367359 + L2 LINE L2 1838 2084 -1230 427 249 22 111 chr4 148921379 148921499 -35367163 - MER5B DNA MER1_type -9 169 69 1994 94 79 4 chr4 148921499 148921776 -35366886 - AluSp SINE Alu -15 298 1 427 249 22 111 chr4 148921776 148921836 -35366826 - MER5B DNA MER1_type -109 69 5 250 385 92 9 chr4 148921833 148922051 -35366611 + L2 LINE L2 2486 2721 -593 * 354 269 104 15 chr4 148927083 148927217 -35361445 - L2 LINE L2 0 3313 3168 21 0 0 0 chr4 148927309 148927330 -35361332 + AT_rich Low_complexity Low_complexity 1 21 0 401 282 33 152 chr4 148928012 148928658 -35360004 - L2 LINE L2 0 3272 2698 1419 157 0 114 chr4 148928707 148929031 -35359631 + AluJo SINE Alu 22 308 -4 425 309 43 21 chr4 148929201 148929434 -35359228 + Charlie2 DNA MER1_type 1 238 -2624 468 257 127 7 chr4 148929492 148929768 -35358894 + Charlie2 DNA MER1_type 1863 2171 -691 2221 93 23 13 chr4 148929787 148930097 -35358565 - AluSp SINE Alu 0 313 1 308 321 116 24 chr4 148930568 148930861 -35357801 + L1MC4a LINE L1 5611 5930 -1878 1711 198 70 58 chr4 148931496 148931972 -35356690 + MLT2B1 LTR ERVL 1 485 -35 189 107 0 0 chr4 148931972 148932000 -35356662 + (CA)n Simple_repeat Simple_repeat 1 28 0 1711 198 70 58 chr4 148932000 148932037 -35356625 + MLT2B1 LTR ERVL 485 520 0 21 0 0 0 chr4 148932583 148932604 -35356058 + AT_rich Low_complexity Low_complexity 1 21 0 318 355 111 27 chr4 148932886 148933030 -35355632 - L3 LINE CR1 -199 1378 1248 355 178 14 0 chr4 148933030 148933103 -35355559 - L1MA9 LINE L1 0 6312 6239 318 355 111 27 chr4 148933103 148933446 -35355216 - L3 LINE CR1 -329 1248 850 221 318 60 86 chr4 148933762 148934037 -35354625 + L2 LINE L2 2734 2993 -279 2078 123 11 0 chr4 148934037 148934340 -35354322 - AluSg SINE Alu 0 306 1 221 318 60 86 chr4 148934340 148934441 -35354221 + L2 LINE L2 2993 3095 -177 23 54 0 0 chr4 148934545 148934582 -35354080 + AT_rich Low_complexity Low_complexity 1 37 0 302 251 25 38 chr4 148934963 148935131 -35353531 + L1ME LINE L1 5723 5836 -330 251 100 25 0 chr4 148935186 148935226 -35353436 - MLT2C2 LTR ERVL -1 463 423 1888 185 88 20 chr4 148935303 148935747 -35352915 - MLT2B1 LTR ERVL -46 474 1 2358 88 3 0 chr4 148935756 148936051 -35352611 - AluSg SINE Alu -14 296 1 30 69 0 0 chr4 148936297 148936355 -35352307 + AT_rich Low_complexity Low_complexity 1 58 0 2382 69 0 3 chr4 148937393 148937696 -35350966 + AluY SINE Alu 3 304 -7 22 35 0 0 chr4 148938992 148939021 -35349641 + AT_rich Low_complexity Low_complexity 1 29 0 385 242 55 0 chr4 148939454 148939545 -35349117 + MIR SINE MIR 31 126 -136 816 278 70 62 chr4 148939569 148940169 -35348493 - MLT1L LTR MaLR -9 606 2 208 250 0 0 chr4 148940194 148940238 -35348424 + MIR SINE MIR 184 227 -35 201 340 19 58 chr4 148940614 148940717 -35347945 + L2 LINE L2 3137 3235 -37 329 247 14 0 chr4 148941268 148941341 -35347321 + L2 LINE L2 3223 3296 -17 227 235 25 0 chr4 148941342 148941423 -35347239 + GA-rich Low_complexity Low_complexity 2 84 0 198 303 57 107 chr4 148941705 148942005 -35346657 + L2 LINE L2 2829 3113 -159 262 363 49 0 chr4 148943421 148943523 -35345139 + MIR SINE MIR 156 262 0 228 200 0 0 chr4 148944374 148944429 -35344233 + (TA)n Simple_repeat Simple_repeat 2 56 0 27 0 0 0 chr4 148944695 148944722 -35343940 + AT_rich Low_complexity Low_complexity 1 27 0 13577 128 32 17 chr4 148944809 148947152 -35341510 - Tigger1 DNA MER2_type -13 2405 27 313 255 59 0 chr4 148947276 148947378 -35341284 - LTR33A LTR ERVL 0 523 416 511 264 155 0 chr4 148947904 148948181 -35340481 + LTR50 LTR ERVL 475 794 -1 515 242 53 23 chr4 148948452 148948584 -35340078 + L2 LINE L2 3136 3271 -1 1567 174 99 14 chr4 148948661 148949006 -35339656 - MLT1A2 LTR MaLR 0 374 1 312 308 28 65 chr4 148950129 148950412 -35338250 + MIR SINE MIR 20 256 -6 1350 200 122 28 chr4 148951237 148951651 -35337011 + MLT1C LTR MaLR 1 457 -10 438 304 76 0 chr4 148951669 148951840 -35336822 + MIR SINE MIR 9 192 -70 1437 147 108 20 chr4 148951862 148952280 -35336382 - LTR54 LTR ERV1 -2 496 1 258 326 65 38 chr4 148952810 148952994 -35335668 + MIR SINE MIR 59 247 -15 2112 129 33 24 chr4 148954369 148954703 -35333959 - MER1B DNA MER1_type 0 337 1 333 100 0 0 chr4 148954827 148954877 -35333785 + (CA)n Simple_repeat Simple_repeat 1 50 0 398 280 92 60 chr4 148955844 148956158 -35332504 + L1MEd LINE L1 450 773 -5346 449 235 8 0 chr4 148956190 148956309 -35332353 + L1MEd LINE L1 2146 2265 -3864 400 343 28 11 chr4 148956532 148956710 -35331952 + MER5A DNA MER1_type 5 185 -4 1905 163 3 0 chr4 148956710 148957017 -35331645 - AluJb SINE Alu -4 308 1 184 410 110 0 chr4 148957248 148957475 -35331187 + L2 LINE L2 2493 2744 -570 23 0 0 0 chr4 148957679 148957702 -35330960 + AT_rich Low_complexity Low_complexity 1 23 0 3979 126 29 2 chr4 148957835 148958453 -35330209 + MER41B LTR ERV1 1 635 0 6602 132 40 15 chr4 148958462 148959651 -35329011 + Tigger3b DNA MER2_type 13 1230 -1 2821 130 35 5 chr4 148959935 148960366 -35328296 + MER83 LTR ERV1 1 444 -4 32 26 0 0 chr4 148961565 148961604 -35327058 + AT_rich Low_complexity Low_complexity 1 39 0 435 147 0 0 chr4 148962974 148963042 -35325620 + Tigger2 DNA MER2_type 1 68 -2650 * 2331 156 57 5 chr4 148963033 148963457 -35325205 + Tigger2 DNA MER2_type 2273 2718 0 2629 158 25 8 chr4 148963509 148964029 -35324633 + L1MA9 LINE L1 5551 6079 -233 3072 265 108 66 chr4 148964137 148966231 -35322431 + L2 LINE L2 1124 3313 0 1881 164 13 7 chr4 148966477 148966787 -35321875 + AluJo SINE Alu 1 312 0 774 207 67 16 chr4 148967426 148967619 -35321043 - MIR SINE MIR -38 224 22 660 260 46 46 chr4 148967832 148967884 -35320778 + L1MD2 LINE L1 6076 6127 -232 258 116 0 0 chr4 148967884 148967927 -35320735 + (CA)n Simple_repeat Simple_repeat 2 44 0 660 260 46 46 chr4 148967927 148967959 -35320703 + L1MD2 LINE L1 6127 6158 -201 2018 148 7 0 chr4 148967959 148968262 -35320400 + AluSx SINE Alu 1 305 -7 660 260 46 46 chr4 148968262 148968457 -35320205 + L1MD2 LINE L1 6157 6356 -3 286 309 116 83 chr4 148969627 148969999 -35318663 + L2 LINE L2 2844 3227 -45 1989 131 14 7 chr4 148970331 148970622 -35318040 - AluJb SINE Alu -19 293 1 6440 178 63 12 chr4 148971423 148971500 -35317162 + ERVL LTR ERVL 2807 2879 -2885 2180 107 37 3 chr4 148971500 148971798 -35316864 + AluSq SINE Alu 1 308 -5 6440 178 63 12 chr4 148971798 148973016 -35315646 + ERVL LTR ERVL 2879 4168 -1596 1939 118 0 0 chr4 148973313 148973606 -35315056 + AluSx SINE Alu 23 315 0 675 305 82 20 chr4 148974400 148974790 -35313872 + LTR16B LTR ERVL 51 464 0 219 139 0 0 chr4 148975070 148975106 -35313556 + (CA)n Simple_repeat Simple_repeat 2 37 0 1337 178 0 0 chr4 148975199 148975407 -35313255 - AluJo SINE Alu -18 294 87 241 383 37 12 chr4 148976434 148976596 -35312066 - MIR SINE MIR -52 210 45 2138 136 0 0 chr4 148976757 148977051 -35311611 + AluSx SINE Alu 1 294 -18 899 155 36 57 chr4 148977578 148977771 -35310891 - MER5A DNA MER1_type 0 189 1 308 228 44 89 chr4 148979395 148979553 -35309109 + LTR33A LTR ERVL 3 153 -370 528 77 0 0 chr4 148979606 148979684 -35308978 + (TC)n Simple_repeat Simple_repeat 1 78 0 489 268 8 16 chr4 148980279 148980406 -35308256 + MIR SINE MIR 58 183 -79 467 82 14 0 chr4 148980960 148981033 -35307629 + (TC)n Simple_repeat Simple_repeat 1 74 0 1361 212 163 19 chr4 148982305 148982663 -35305999 - MLT1F1 LTR MaLR 0 567 110 2165 129 0 0 chr4 148982663 148982958 -35305704 + AluSx SINE Alu 1 295 -17 1361 212 163 19 chr4 148982958 148983087 -35305575 - MLT1F1 LTR MaLR -457 110 1 30 0 0 0 chr4 148983322 148983352 -35305310 + AT_rich Low_complexity Low_complexity 1 30 0 406 315 33 6 chr4 148983357 148983538 -35305124 + L1MEc LINE L1 35 220 -6176 1264 233 73 3 chr4 148983541 148983884 -35304778 - LTR40c LTR ERVL -64 401 35 21 36 0 0 chr4 148985965 148985993 -35302669 + AT_rich Low_complexity Low_complexity 1 28 0 252 69 69 121 chr4 148986070 148986128 -35302534 - L2 LINE L2 -4 3309 3255 941 121 0 0 chr4 148986214 148986363 -35302299 + L1MA9 LINE L1 6163 6311 -1 22 0 0 0 chr4 148986563 148986585 -35302077 + AT_rich Low_complexity Low_complexity 1 22 0 305 341 173 0 chr4 148986808 148986987 -35301675 + L2 LINE L2 2708 2917 -397 1308 194 18 102 chr4 148987104 148987533 -35301129 + L1MA9 LINE L1 2364 2827 -4187 2106 123 17 0 chr4 148987533 148987826 -35300836 + AluSg SINE Alu 1 298 -12 1308 194 18 102 chr4 148987826 148988081 -35300581 + L1MA9 LINE L1 2827 6987 -27 206 208 0 57 chr4 148988951 148989004 -35299658 + MIR SINE MIR 213 262 0 213 311 47 47 chr4 148989051 148989157 -35299505 + L2 LINE L2 3158 3263 -9 243 175 16 48 chr4 148989163 148989226 -35299436 + GA-rich Low_complexity Low_complexity 3 63 0 499 201 35 42 chr4 148989717 148989861 -35298801 + LTR33 LTR ERVL 3 145 -376 243 313 56 28 chr4 148990021 148990165 -35298497 + LTR33 LTR ERVL 374 521 0 401 184 78 134 chr4 148990166 148990383 -35298279 + L2 LINE L2 3109 3313 0 23 33 0 0 chr4 148990384 148990414 -35298248 + AT_rich Low_complexity Low_complexity 1 30 0 231 36 0 0 chr4 148990700 148990728 -35297934 + (T)n Simple_repeat Simple_repeat 1 28 0 213 135 0 81 chr4 148992113 148992187 -35296475 + (TTTTTA)n Simple_repeat Simple_repeat 4 71 0 268 277 12 0 chr4 148992237 148992320 -35296342 + Charlie7 DNA MER1_type 2524 2607 -5 423 0 0 0 chr4 148993375 148993422 -35295240 + (TG)n Simple_repeat Simple_repeat 1 47 0 423 0 0 0 chr4 148993421 148993468 -35295194 + (GA)n Simple_repeat Simple_repeat 1 47 0 419 178 34 93 chr4 148993789 148993907 -35294755 - MER53 DNA DNA -78 111 1 183 227 61 76 chr4 148994442 148994508 -35294154 - MIR SINE MIR -61 147 83 544 197 55 33 chr4 148994815 148995040 -35293622 - MER20B DNA MER1_type 0 783 514 681 288 98 21 chr4 148995258 148995584 -35293078 - MER20B DNA MER1_type -276 507 157 2175 85 4 0 chr4 148995620 148995891 -35292771 + AluSq SINE Alu 36 307 -6 2944 184 19 7 chr4 148996417 148996451 -35292211 - MLT2B3 LTR ERVL -6 548 516 576 120 0 0 chr4 148996451 148996551 -35292111 + (TAGA)n Simple_repeat Simple_repeat 2 101 0 2944 184 19 7 chr4 148996551 148997058 -35291604 - MLT2B3 LTR ERVL -38 516 1 19045 158 45 11 chr4 148997339 149000704 -35287958 - L1 LINE L1 -797 6768 3097 1661 188 7 10 chr4 149000704 149000992 -35287670 + AluSx SINE Alu 1 287 -25 19045 158 45 11 chr4 149000992 149003739 -35284923 - L1 LINE L1 -4468 3097 444 1445 89 15 89 chr4 149004465 149004568 -35284094 + L1MA3 LINE L1 6032 6141 -164 898 150 0 0 chr4 149004568 149004701 -35283961 + FLAM_C SINE Alu 1 133 0 1445 89 15 89 chr4 149004701 149004868 -35283794 + L1MA3 LINE L1 6141 6282 -23 22 35 0 0 chr4 149004868 149004897 -35283765 + AT_rich Low_complexity Low_complexity 1 29 0 807 99 78 0 chr4 149004947 149005088 -35283574 + L1MA6 LINE L1 6148 6299 -1 2207 139 19 39 chr4 149005108 149005519 -35283143 + MER57A LTR ERV1 1 403 0 286 330 34 34 chr4 149005629 149005808 -35282854 + MIR SINE MIR 11 189 -73 1880 173 13 7 chr4 149006175 149006482 -35282180 + AluJo SINE Alu 1 309 -3 2032 101 0 31 chr4 149006557 149006843 -35281819 + AluSx SINE Alu 23 299 -13 240 352 56 12 chr4 149007319 149007481 -35281181 + LTR67 LTR ERVL 98 266 -291 703 236 79 22 chr4 149007714 149007943 -35280719 + MIR SINE MIR 13 254 -8 955 295 29 10 chr4 149008680 149009097 -35279565 - L1M4 LINE L1 -1184 4962 4538 29 0 0 0 chr4 149010245 149010274 -35278388 + AT_rich Low_complexity Low_complexity 1 29 0 187 345 11 11 chr4 149010285 149010372 -35278290 + MIR SINE MIR 80 166 -96 308 302 62 39 chr4 149010617 149010796 -35277866 + LTR33 LTR ERVL 26 208 -313 910 244 38 46 chr4 149010890 149011284 -35277378 + MLT1C LTR MaLR 6 396 -71 247 265 59 29 chr4 149011613 149011715 -35276947 - L1ME LINE L1 -401 5720 5616 1254 183 12 63 chr4 149012386 149012720 -35275942 + MER33 DNA MER1_type 8 324 0 558 218 135 16 chr4 149012775 149012938 -35275724 + MER5A DNA MER1_type 4 189 0 857 129 0 8 chr4 149013501 149013625 -35275037 + FLAM_C SINE Alu 3 125 -8 24 0 0 0 chr4 149013626 149013650 -35275012 + AT_rich Low_complexity Low_complexity 1 24 0 350 290 111 21 chr4 149013958 149014392 -35274270 - L1ME LINE L1 -1317 4829 4357 369 315 39 23 chr4 149014695 149014952 -35273710 - L1ME LINE L1 -309 5812 5552 1080 229 28 3 chr4 149015338 149015622 -35273040 - Charlie4a DNA MER1_type -182 326 36 709 156 70 60 chr4 149016028 149016227 -35272435 - MER106A DNA MER1_type 0 236 36 866 303 68 41 chr4 149017842 149018151 -35270511 + L2 LINE L2 61 387 -2927 189 0 0 0 chr4 149018151 149018172 -35270490 + (CA)n Simple_repeat Simple_repeat 1 21 0 866 303 68 41 chr4 149018172 149018304 -35270358 + L2 LINE L2 387 514 -2800 214 253 108 129 chr4 149019135 149019235 -35269427 - MIR SINE MIR -26 236 135 963 146 0 47 chr4 149019235 149019406 -35269256 - FRAM SINE Alu -2 164 2 2025 125 7 3 chr4 149019416 149019712 -35268950 - AluSg1 SINE Alu -12 297 1 214 253 108 129 chr4 149019712 149019794 -35268868 - MIR SINE MIR -136 126 47 240 59 0 0 chr4 149020405 149020439 -35268223 + (CA)n Simple_repeat Simple_repeat 2 35 0 559 269 169 30 chr4 149020662 149021150 -35267512 - L2 LINE L2 -171 3142 2562 309 203 0 0 chr4 149021151 149021215 -35267447 - MER46C DNA MER2_type -14 324 261 2103 89 64 0 chr4 149022282 149022563 -35266099 - AluSp SINE Alu -14 299 1 264 237 53 38 chr4 149022719 149022850 -35265812 - Charlie7 DNA MER1_type -31 2581 2449 758 199 13 13 chr4 149023300 149023451 -35265211 + MLT1F1 LTR MaLR 417 567 0 754 324 76 16 chr4 149024063 149024486 -35264176 - L2 LINE L2 -1425 1889 1442 920 352 50 30 chr4 149024507 149025320 -35263342 - L2 LINE L2 -2112 1202 233 2603 110 28 28 chr4 149025320 149025748 -35262914 - MSTA LTR MaLR 0 428 1 920 352 50 30 chr4 149025748 149025892 -35262770 - L2 LINE L2 -3081 233 93 204 40 0 0 chr4 149026539 149026564 -35262098 + (CAG)n Simple_repeat Simple_repeat 2 26 0 188 196 0 20 chr4 149027185 149027236 -35261426 + (TA)n Simple_repeat Simple_repeat 1 50 0 207 0 0 0 chr4 149027768 149027791 -35260871 + (A)n Simple_repeat Simple_repeat 1 23 0 397 91 13 52 chr4 149028187 149028264 -35260398 + MER58B DNA MER1_type 260 333 -8 1845 173 10 16 chr4 149028429 149028736 -35259926 - AluJo SINE Alu -7 305 1 188 362 43 37 chr4 149028918 149029081 -35259581 - L2 LINE L2 -10 3303 3140 343 254 0 26 chr4 149029085 149029199 -35259463 + L1ME4a LINE L1 5978 6088 -33 21 57 0 0 chr4 149029201 149029236 -35259426 + AT_rich Low_complexity Low_complexity 1 35 0 643 242 6 22 chr4 149029605 149029783 -35258879 + FRAM SINE Alu 1 40 0 279 154 19 0 chr4 149030088 149030140 -35258522 + HsTC2 DNA Tc2 1846 1898 0 21 36 0 0 chr4 149031791 149031819 -35256843 + AT_rich Low_complexity Low_complexity 1 28 0 933 214 56 32 chr4 149032322 149032574 -35256088 - MIR SINE MIR 0 262 5 2108 133 0 3 chr4 149033701 149034002 -35254660 + AluSx SINE Alu 1 300 -12 22 35 0 0 chr4 149034223 149034252 -35254410 + AT_rich Low_complexity Low_complexity 1 29 0 269 169 17 0 chr4 149035401 149035460 -35253202 + (TA)n Simple_repeat Simple_repeat 1 60 0 5364 174 42 13 chr4 149035581 149037542 -35251120 + L1MB1 LINE L1 4148 6167 -1 203 179 26 0 chr4 149039415 149039454 -35249208 + (CATA)n Simple_repeat Simple_repeat 4 43 0 1507 242 65 23 chr4 149039878 149040444 -35248218 - L1MC5 LINE L1 -60 7901 7312 243 0 0 0 chr4 149040450 149040477 -35248185 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 660 231 0 0 chr4 149040549 149040683 -35247979 - FRAM SINE Alu -31 145 12 1592 185 52 103 chr4 149040687 149040768 -35247894 - L1MC5 LINE L1 -718 7243 7159 1926 130 19 54 chr4 149040768 149041138 -35247524 + MER46B DNA MER2_type 1 232 -4 1592 185 52 103 chr4 149041138 149041731 -35246931 - L1MC5 LINE L1 -802 7159 6596 270 366 89 0 chr4 149041863 149041986 -35246676 - L2 LINE L2 0 3272 3139 396 0 0 0 chr4 149042517 149042561 -35246101 + (TG)n Simple_repeat Simple_repeat 2 45 0 254 274 75 19 chr4 149043122 149043228 -35245434 - L1ME LINE L1 -282 5888 5777 306 320 77 0 chr4 149043243 149043396 -35245266 - L1ME LINE L1 -456 5714 5554 766 313 106 29 chr4 149043439 149044320 -35244342 - L1ME LINE L1 -786 5360 4377 326 284 142 13 chr4 149044320 149044475 -35244187 - MER69A DNA AcHobo -1 176 2 766 313 106 29 chr4 149044475 149044691 -35243971 - L1ME LINE L1 -1769 4377 4179 263 200 148 39 chr4 149046090 149046245 -35242417 - Charlie7 DNA MER1_type 0 2612 2441 400 376 24 12 chr4 149048637 149048802 -35239860 + MER91A DNA MER1_type 1 167 -29 227 283 170 47 chr4 149048942 149049048 -35239614 + MIR SINE MIR 73 191 -71 24 0 0 0 chr4 149049586 149049610 -35239052 + AT_rich Low_complexity Low_complexity 1 24 0 186 43 0 0 chr4 149051914 149051937 -35236725 + (TTAAA)n Simple_repeat Simple_repeat 4 26 0 340 136 0 25 chr4 149052243 149052324 -35236338 + (CA)n Simple_repeat Simple_repeat 2 80 0 228 292 0 15 chr4 149052509 149052574 -35236088 + MIR SINE MIR 61 124 -84 501 321 68 54 chr4 149052751 149053193 -35235469 + ERVL LTR ERVL 4897 5344 -420 1166 219 65 80 chr4 149053363 149053778 -35234884 - MLT1C LTR MaLR 0 467 59 465 304 88 0 chr4 149053922 149054139 -35234523 + LTR16A LTR ERVL 208 443 -7 725 297 9 14 chr4 149054141 149054360 -35234302 + MIR SINE MIR 40 257 -5 25 65 0 0 chr4 149054495 149054541 -35234121 + AT_rich Low_complexity Low_complexity 1 46 0 364 253 259 18 chr4 149055238 149055408 -35233254 - MIR SINE MIR -3 259 49 344 262 103 56 chr4 149056091 149056217 -35232445 - L2 LINE L2 -6 3307 3176 232 253 98 116 chr4 149056387 149056519 -35232143 - L2 LINE L2 -209 3063 2930 1659 208 19 32 chr4 149056519 149056898 -35231764 - MLT1A2 LTR MaLR 0 374 1 232 253 98 116 chr4 149056898 149057085 -35231577 - L2 LINE L2 -342 2930 2699 2572 272 53 36 chr4 149057775 149058890 -35229772 + L1ME LINE L1 3 1088 -4982 23 54 0 0 chr4 149060129 149060166 -35228496 + AT_rich Low_complexity Low_complexity 1 37 0 640 164 23 31 chr4 149060279 149060407 -35228255 - FLAM_C SINE Alu -16 127 1 23 68 0 0 chr4 149060407 149060451 -35228211 + AT_rich Low_complexity Low_complexity 1 44 0 1905 141 18 0 chr4 149060730 149061038 -35227624 - AluJb SINE Alu 0 313 1 887 310 16 4 chr4 149061102 149061347 -35227315 - MIR SINE MIR -1 261 14 186 43 0 0 chr4 149062205 149062228 -35226434 + (TGGA)n Simple_repeat Simple_repeat 1 23 0 270 346 112 49 chr4 149063356 149063908 -35224754 + L2 LINE L2 2193 2779 -535 476 259 37 0 chr4 149065160 149065268 -35223394 + L2 LINE L2 3199 3310 -3 189 316 35 0 chr4 149066772 149066829 -35221833 - L3 LINE CR1 -7 1570 1512 390 21 0 0 chr4 149067040 149067087 -35221575 + (TG)n Simple_repeat Simple_repeat 2 48 0 203 105 123 0 chr4 149067218 149067275 -35221387 - MIR3 SINE MIR -1 207 144 189 316 35 0 chr4 149069973 149070030 -35218632 - L3 LINE CR1 -7 1570 1512 406 250 10 19 chr4 149070097 149070201 -35218461 + MLT1J2 LTR MaLR 67 169 -281 278 258 22 11 chr4 149070233 149070322 -35218340 + MLT1J2 LTR MaLR 347 436 -14 1768 191 0 0 chr4 149070716 149071020 -35217642 + AluJb SINE Alu 1 304 -8 589 157 0 10 chr4 149071442 149071544 -35217118 + AluS SINE Alu 2 102 -211 265 205 54 90 chr4 149171570 149171736 -35116926 - HAL1 LINE L1 -1467 1040 881 210 233 33 0 chr4 149171841 149171901 -35116761 + (TA)n Simple_repeat Simple_repeat 1 62 0 1153 170 90 0 chr4 149171901 149172212 -35116450 - MER97a DNA MER1_type? -61 833 495 201 136 0 45 chr4 149172213 149172257 -35116405 + (TTTTTA)n Simple_repeat Simple_repeat 5 46 0 2761 28 0 0 chr4 149172258 149172580 -35116082 - L1PA4 LINE L1 -3 6152 5831 507 287 123 10 chr4 149172873 149173068 -35115594 + MIR SINE MIR 16 232 -30 7503 135 1 10 chr4 149173921 149175219 -35113443 + L1P LINE L1 1003 2289 -3857 4074 160 69 14 chr4 149175748 149176531 -35112131 - LTR1B LTR ERV1 0 826 1 952 139 0 6 chr4 149176684 149176850 -35111812 + L1MA6 LINE L1 6131 6295 -5 21 0 0 0 chr4 149176855 149176876 -35111786 + AT_rich Low_complexity Low_complexity 1 21 0 920 201 21 0 chr4 149177181 149177370 -35111292 + MER3 DNA MER1_type 1 193 -16 714 213 38 25 chr4 149178346 149178506 -35110156 - MER5B DNA MER1_type -16 162 1 209 304 22 33 chr4 149178513 149178605 -35110057 + MER5A DNA MER1_type 74 164 -25 357 288 20 65 chr4 149178631 149178784 -35109878 - MIR SINE MIR -69 193 48 7145 54 1 1 chr4 149180895 149181822 -35106840 + L1PA5 LINE L1 5227 6153 -1 2292 172 16 7 chr4 149182482 149182930 -35105732 - Tigger2 DNA MER2_type 0 2718 2267 410 176 0 0 chr4 149182914 149182982 -35105680 - Tigger2 DNA MER2_type -2649 69 2 * 249 319 14 0 chr4 149183004 149183073 -35105589 + L2 LINE L2 3235 3304 -9 530 319 127 38 chr4 149185458 149186144 -35102518 + L2 LINE L2 2486 3233 -39 287 357 24 8 chr4 149186142 149186268 -35102394 - MIR SINE MIR -109 153 26 * 231 289 0 22 chr4 149186298 149186388 -35102274 + L1MC4 LINE L1 6614 6701 -1341 281 280 0 0 chr4 149186389 149186482 -35102180 + L1MC4 LINE L1 6615 6707 -1335 963 140 158 22 chr4 149186542 149186764 -35101898 - THE1C LTR MaLR 0 375 124 422 240 0 20 chr4 149187126 149187226 -35101436 + MIR SINE MIR 122 219 -43 1620 43 0 0 chr4 149187644 149187851 -35100811 - L1P LINE L1 -3424 2722 2516 * 17971 46 0 0 chr4 149187850 149190184 -35098478 + L1P LINE L1 2752 5086 -1060 1161 80 107 5 chr4 149190286 149190473 -35098189 + LTR1 LTR ERV1 580 785 0 391 298 0 0 chr4 149190606 149190720 -35097942 - FLAM_A SINE Alu -19 114 1 2079 116 13 35 chr4 149190770 149191088 -35097574 + AluSx SINE Alu 1 311 -1 1754 103 0 0 chr4 149191837 149192079 -35096583 - AluSg/x SINE Alu -4 306 65 663 81 315 0 chr4 149192080 149192191 -35096471 - AluSg SINE Alu -164 146 1 210 37 0 0 chr4 149193319 149193346 -35095316 + (TTG)n Simple_repeat Simple_repeat 3 29 0 654 129 11 0 chr4 149193797 149193919 -35094743 - L1MB1 LINE L1 -245 5944 5842 1187 141 23 61 chr4 149193923 149194027 -35094635 - L1MA10 LINE L1 -18 6316 6210 198 0 0 0 chr4 149194027 149194049 -35094613 + (TA)n Simple_repeat Simple_repeat 1 22 0 1187 141 23 61 chr4 149194049 149194206 -35094456 - L1MA10 LINE L1 -124 6210 6065 414 176 33 22 chr4 149194310 149194401 -35094261 + L1M3 LINE L1 5564 5655 -516 5436 108 19 6 chr4 149196786 149198197 -35090465 - L1PA16 LINE L1 -1 6165 4714 337 163 209 23 chr4 149198298 149198384 -35090278 - FLAM_A SINE Alu 0 133 32 1990 167 3 0 chr4 149198536 149198830 -35089832 + AluSx SINE Alu 1 295 -17 588 250 163 12 chr4 149199527 149199687 -35088975 + MIR SINE MIR 79 262 0 19485 89 47 1 chr4 149200177 149203877 -35084785 + L1PA7 LINE L1 2450 6151 -3 24 0 0 0 chr4 149203892 149203916 -35084746 + AT_rich Low_complexity Low_complexity 1 24 0 219 114 0 0 chr4 149206124 149206159 -35082503 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 207 0 0 0 chr4 149207003 149207026 -35081636 + (A)n Simple_repeat Simple_repeat 1 23 0 455 269 17 17 chr4 149207506 149207625 -35081037 + L2 LINE L2 3195 3313 0 1177 234 61 36 chr4 149208052 149208445 -35080217 + MLT1C LTR MaLR 65 467 0 24 67 0 0 chr4 149208508 149208553 -35080109 + AT_rich Low_complexity Low_complexity 1 45 0 395 327 43 26 chr4 149209925 149210149 -35078513 + MIR SINE MIR 1 227 -35 358 265 90 11 chr4 149210284 149210473 -35078189 - MLT1J LTR MaLR -4 507 304 2952 46 0 3 chr4 149210500 149210890 -35077772 - L1P LINE L1 -910 5236 4848 1252 79 0 6 chr4 149210890 149211054 -35077608 + L1PA5 LINE L1 5973 6135 -19 2144 123 55 75 chr4 149211154 149211624 -35077038 - LTR1 LTR ERV1 -293 492 32 263 338 33 60 chr4 149211692 149211843 -35076819 - L2 LINE L2 -21 3292 3146 2351 99 0 7 chr4 149213961 149214263 -35074399 + AluSg SINE Alu 1 300 -10 234 0 0 0 chr4 149214263 149214289 -35074373 + (TA)n Simple_repeat Simple_repeat 2 27 0 1572 221 65 14 chr4 149214294 149214738 -35073924 + MLT1C LTR MaLR 1 467 0 2311 95 3 0 chr4 149214860 149215155 -35073507 + AluSp SINE Alu 1 296 -17 339 229 0 79 chr4 149216792 149216932 -35071730 - L1MC4 LINE L1 0 8042 7914 198 275 6 12 chr4 149216940 149217100 -35071562 + (TA)n Simple_repeat Simple_repeat 2 160 0 724 247 9 9 chr4 149217104 149217335 -35071327 - L1MC4 LINE L1 -126 7916 7686 382 299 155 92 chr4 149218970 149219241 -35069421 - L2 LINE L2 0 3272 2985 318 26 0 0 chr4 149220052 149220091 -35068571 + (CTAA)n Simple_repeat Simple_repeat 2 40 0 236 246 0 18 chr4 149220172 149220229 -35068433 + GA-rich Low_complexity Low_complexity 4 59 0 1438 154 77 0 chr4 149221368 149221628 -35067034 + AluJb SINE Alu 3 282 -30 292 294 35 0 chr4 149223586 149223671 -35064991 + MIR3 SINE MIR 104 191 -17 290 213 0 16 chr4 149223896 149223957 -35064705 - MIR SINE MIR -60 148 89 192 40 0 0 chr4 149224166 149224191 -35064471 + (CAGAGA)n Simple_repeat Simple_repeat 2 26 0 1327 99 0 0 chr4 149225124 149225296 -35063366 - AluSg/x SINE Alu -5 307 136 746 216 41 5 chr4 149225397 149225591 -35063071 + L1M2 LINE L1 3589 3789 -2357 6507 203 139 9 chr4 149225599 149227428 -35061234 + L1PB1 LINE L1 6 2072 -4791 * 8051 172 3 5 chr4 149227423 149230068 -35058594 + L1PB1 LINE L1 4227 6865 -2 21 36 0 0 chr4 149230078 149230106 -35058556 + AT_rich Low_complexity Low_complexity 1 28 0 1943 146 0 36 chr4 149230360 149230662 -35058000 + AluSx SINE Alu 1 291 -21 8352 147 16 9 chr4 149230669 149232656 -35056006 + L1M2 LINE L1 3789 5785 -515 1783 183 0 4 chr4 149232658 149232937 -35055725 + AluJb SINE Alu 3 280 -32 1018 103 0 12 chr4 149232938 149233103 -35055559 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 243 231 87 39 chr4 149233608 149233712 -35054950 - L3 LINE CR1 -2 1575 1467 362 257 0 93 chr4 149233756 149233896 -35054766 - L3 LINE CR1 -315 1262 1136 463 259 171 12 chr4 149234153 149234323 -35054339 - MIR SINE MIR 0 262 66 1805 157 7 10 chr4 149236393 149236692 -35051970 + AluJb SINE Alu 15 312 0 591 280 140 50 chr4 149236798 149237220 -35051442 + HAL1 LINE L1 279 738 -1769 1372 252 87 25 chr4 149237233 149237705 -35050957 + MER97a DNA MER1_type? 3 503 -391 41616 45 2 0 chr4 149237707 149243533 -35045129 + L1PA4 LINE L1 2 5834 -321 321 307 73 47 chr4 149243767 149243917 -35044745 - MIR3 SINE MIR -15 193 40 516 283 87 6 chr4 149245060 149245233 -35043429 + MIR3 SINE MIR 14 200 -8 960 172 12 18 chr4 149245801 149245964 -35042698 + FRAM SINE Alu 1 155 -21 258 253 10 71 chr4 149246561 149246660 -35042002 + MIR SINE MIR 148 240 -22 396 308 96 6 chr4 149246717 149246873 -35041789 + L2 LINE L2 2372 2541 -773 21 0 0 0 chr4 149248455 149248476 -35040186 + AT_rich Low_complexity Low_complexity 1 21 0 350 250 62 45 chr4 149249174 149249286 -35039376 - L2 LINE L2 -5 3267 3154 * 382 314 34 0 chr4 149249281 149249399 -35039263 + MIR SINE MIR 23 144 -64 228 373 84 0 chr4 149249507 149249649 -35039013 + MIR SINE MIR 103 256 -6 375 257 156 28 chr4 149249850 149250068 -35038594 - HAL1 LINE L1 -13 2494 2249 1953 143 146 11 chr4 149250086 149250463 -35038199 + MSTA LTR MaLR 1 428 0 7246 217 71 7 chr4 149250465 149251948 -35036714 + MSTA-int LTR MaLR 3 1580 0 1859 141 106 47 chr4 149251948 149252210 -35036452 + MSTA LTR MaLR 1 297 -131 1996 157 73 14 chr4 149252210 149252554 -35036108 + THE1B LTR MaLR 1 364 0 1859 141 106 47 chr4 149252554 149252695 -35035967 + MSTA LTR MaLR 297 428 0 2359 253 95 25 chr4 149252703 149253738 -35034924 - HAL1 LINE L1 -286 2221 1115 389 145 118 26 chr4 149253875 149253951 -35034711 - MSTA LTR MaLR -292 83 1 195 254 55 0 chr4 149254024 149254079 -35034583 + L2 LINE L2 3179 3236 -77 7026 30 2 0 chr4 149254625 149255459 -35033203 + L1PA4 LINE L1 5318 6153 -2 697 286 106 46 chr4 149255495 149256153 -35032509 + L1ME4a LINE L1 930 1721 -855 24 32 0 0 chr4 149256206 149256237 -35032425 + AT_rich Low_complexity Low_complexity 1 31 0 1086 131 0 0 chr4 149256512 149256680 -35031982 + MER4A LTR ERV1 471 638 -26 322 343 40 30 chr4 149256736 149256937 -35031725 + L1ME4a LINE L1 2106 2308 -4088 216 0 0 0 chr4 149256954 149256978 -35031684 + (TG)n Simple_repeat Simple_repeat 1 24 0 514 343 64 10 chr4 149257060 149257283 -35031379 + L1ME4a LINE L1 2318 2572 -3643 216 67 0 0 chr4 149257283 149257313 -35031349 + (CA)n Simple_repeat Simple_repeat 1 30 0 514 343 64 10 chr4 149257313 149257477 -35031185 + L1ME4a LINE L1 2572 2726 -3489 243 284 77 31 chr4 149257478 149257739 -35030923 + L1ME4a LINE L1 2791 3063 -3152 294 321 99 25 chr4 149257778 149258805 -35029857 + L1ME4a LINE L1 3166 4268 -1947 639 263 76 14 chr4 149259280 149259569 -35029093 + L1ME4a LINE L1 5661 5967 -223 1147 222 146 44 chr4 149259743 149260265 -35028397 + MER90 LTR ERV1 1 575 0 950 150 92 48 chr4 149260510 149260717 -35027945 - MER20 DNA MER1_type 0 219 4 192 266 0 31 chr4 149260791 149260855 -35027807 + MIR SINE MIR 108 169 -93 2139 125 0 6 chr4 149261684 149261995 -35026667 - AluSx SINE Alu -3 309 1 207 0 0 0 chr4 149262000 149262023 -35026639 + (TTG)n Simple_repeat Simple_repeat 2 24 0 21 36 0 0 chr4 149262785 149262813 -35025849 + AT_rich Low_complexity Low_complexity 1 28 0 4952 153 33 59 chr4 149263577 149264058 -35024604 - L1MA5A LINE L1 -3 6294 5802 204 40 0 0 chr4 149264058 149264083 -35024579 + (TG)n Simple_repeat Simple_repeat 2 26 0 4952 153 33 59 chr4 149264083 149264356 -35024306 - L1MA5A LINE L1 -495 5802 5523 1721 151 27 20 chr4 149264356 149264655 -35024007 - AluSc SINE Alu -8 301 1 4952 153 33 59 chr4 149264655 149265345 -35023317 - L1MA5A LINE L1 -774 5523 4861 897 121 8 0 chr4 149265345 149265469 -35023193 + AluJb SINE Alu 1 125 -187 4952 153 33 59 chr4 149265469 149265685 -35022977 - L1MA5A LINE L1 -1436 4861 4641 219 233 0 0 chr4 149265800 149265843 -35022819 + L2 LINE L2 3252 3294 -19 44 35 0 0 chr4 149267147 149267205 -35021457 + AT_rich Low_complexity Low_complexity 1 58 0 7299 44 0 3 chr4 149268156 149269665 -35018997 - L1PA5 LINE L1 -8 6146 4641 1240 56 0 0 chr4 149269665 149269826 -35018836 + L1PA5 LINE L1 4468 4628 -1518 518 217 38 80 chr4 149270384 149270596 -35018066 - MLT1K LTR MaLR -8 580 378 192 301 184 0 chr4 149271535 149271638 -35017024 - L2 LINE L2 -12 3301 3180 796 243 161 40 chr4 149271877 149272256 -35016406 - MLT1J1 LTR MaLR -9 437 13 1855 180 22 83 chr4 149272817 149273311 -35015351 + MLT1C LTR MaLR 1 464 -3 8980 95 8 1 chr4 149273473 149274758 -35013904 + L1P3 LINE L1 1 1294 -5167 1121 165 18 0 chr4 149275595 149275819 -35012843 + L1MA6 LINE L1 6073 6300 0 2389 168 26 30 chr4 149275938 149276407 -35012255 + MLT1C LTR MaLR 1 467 0 1846 161 3 3 chr4 149276481 149276773 -35011889 + AluJb SINE Alu 13 304 -8 3343 151 18 20 chr4 149278045 149278656 -35010006 + LTR31 LTR ERV1 1 610 -9 409 338 78 30 chr4 149279331 149279831 -35008831 + L2 LINE L2 2148 2671 -643 275 276 82 0 chr4 149279996 149280094 -35008568 + L2 LINE L2 2164 2269 -1045 272 83 0 0 chr4 149280109 149280145 -35008517 + (TGG)n Simple_repeat Simple_repeat 1 36 0 1275 117 0 16 chr4 149280147 149280335 -35008327 - AluSg/x SINE Alu -7 303 119 643 333 83 49 chr4 149280335 149280864 -35007798 + L2 LINE L2 2282 2828 -486 217 274 94 47 chr4 149281298 149281404 -35007258 + L2 LINE L2 2973 3083 -189 206 427 57 0 chr4 149281430 149281554 -35007108 - L2 LINE L2 -3 3269 3139 254 376 74 13 chr4 149281592 149281741 -35006921 + L2 LINE L2 3083 3240 -32 743 221 0 0 chr4 149283349 149283485 -35005177 + MER77 LTR ERV1 459 594 -11 2025 194 58 54 chr4 149283500 149283608 -35005054 - MLT1D LTR MaLR -7 498 392 2782 104 6 6 chr4 149283608 149283972 -35004690 + THE1B LTR MaLR 1 364 0 2025 194 58 54 chr4 149283972 149284359 -35004303 - MLT1D LTR MaLR -113 392 1 229 333 45 9 chr4 149284688 149284799 -35003863 + MER5A DNA MER1_type 1 115 -74 22 35 0 0 chr4 149285110 149285139 -35003523 + AT_rich Low_complexity Low_complexity 1 29 0 222 62 0 0 chr4 149285699 149285731 -35002931 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 239 292 11 22 chr4 149286215 149286304 -35002358 - MIR SINE MIR -70 192 105 427 254 74 16 chr4 149287496 149287618 -35001044 + MIR SINE MIR 60 188 -74 307 253 77 11 chr4 149287757 149287848 -35000814 + L1ME4a LINE L1 5982 6078 -43 6158 185 52 15 chr4 149287993 149289397 -34999265 + L1M2c LINE L1 1142 2608 -4181 2240 194 67 0 chr4 149289399 149289800 -34998862 - MSTA LTR MaLR 0 428 1 2056 158 35 64 chr4 149289800 149290206 -34998456 - MSTA-int LTR MaLR 0 1651 1258 * 2117 182 2 40 chr4 149290205 149290600 -34998062 - MSTA-int LTR MaLR -859 792 413 14066 138 3 15 chr4 149290700 149293895 -34994767 - HERVH LTR ERV1 -2807 4906 1815 2203 106 7 0 chr4 149294012 149294304 -34994358 - AluY SINE Alu -17 294 1 192 262 0 0 chr4 149294410 149294452 -34994210 - MIR SINE MIR -57 151 110 578 167 10 0 chr4 149294829 149294925 -34993737 - MER96B DNA MER1_type? 0 417 321 5973 246 33 12 chr4 149294947 149296500 -34992162 + L1M2c LINE L1 5 1348 -5441 3344 108 9 36 chr4 149296609 149297136 -34991526 - HERVH LTR ERV1 -44 7669 7157 * 7242 113 7 22 chr4 149297129 149298221 -34990441 - HERVH LTR ERV1 -1697 6016 4941 250 230 54 40 chr4 149298366 149298440 -34990222 + MIR SINE MIR 110 184 -78 * 519 357 64 4 chr4 149298437 149298672 -34989990 - MIR SINE MIR 0 262 14 876 250 9 27 chr4 149298838 149299062 -34989600 - MIR SINE MIR 0 262 43 312 354 39 39 chr4 149300984 149301165 -34987497 + MIR3 SINE MIR 3 183 -25 1553 285 130 12 chr4 149301353 149302006 -34986656 + HAL1 LINE L1 11 740 -1767 909 319 37 53 chr4 149302006 149302107 -34986555 - L2 LINE L2 -2 3311 3210 1741 153 8 0 chr4 149302107 149302369 -34986293 + AluJb SINE Alu 35 298 -14 909 319 37 53 chr4 149302369 149302756 -34985906 - L2 LINE L2 -103 3210 2831 2078 164 129 28 chr4 149302768 149303225 -34985437 + MLT1D LTR MaLR 1 503 -2 2264 101 0 3 chr4 149304414 149304711 -34983951 - AluSx SINE Alu -16 296 1 799 217 23 6 chr4 149305914 149306089 -34982573 + MER96B DNA MER1_type? 68 245 -172 2379 231 44 87 chr4 149306114 149306381 -34982281 - MER21B LTR ERV1 -60 803 526 2356 50 44 0 chr4 149306381 149306679 -34981983 - AluY SINE Alu 0 311 1 2379 231 44 87 chr4 149306679 149307237 -34981425 - MER21B LTR ERV1 -337 526 14 279 177 76 0 chr4 149307252 149307331 -34981331 - MER96B DNA MER1_type? -242 175 91 12745 171 40 49 chr4 149307331 149311705 -34976957 - L1MA5A LINE L1 -8 6991 2666 2403 152 70 5 chr4 149311705 149312107 -34976555 + MSTA LTR MaLR 1 428 0 1730 181 122 22 chr4 149312138 149312547 -34976115 + LTR7 LTR ERV1 1 450 0 1986 188 98 11 chr4 149312547 149313004 -34975658 + HERVH LTR ERV1 1 497 -7216 4639 151 24 30 chr4 149313025 149313871 -34974791 + HERVH LTR ERV1 779 1619 -6094 2027 213 56 23 chr4 149313977 149314493 -34974169 - L1MC4 LINE L1 -393 7649 7117 1158 173 13 96 chr4 149314614 149314926 -34973736 - L1MA10 LINE L1 0 6334 6049 796 248 25 0 chr4 149314927 149315129 -34973533 - L1MC4 LINE L1 -957 7085 6879 329 42 0 21 chr4 149316963 149317011 -34971651 + (TG)n Simple_repeat Simple_repeat 1 47 0 25 75 0 0 chr4 149317775 149317828 -34970834 + AT_rich Low_complexity Low_complexity 1 53 0 765 214 0 0 chr4 149318174 149318333 -34970329 + L1ME3 LINE L1 4905 5063 -1083 890 212 53 49 chr4 149318519 149318664 -34969998 + MIR SINE MIR 14 162 -100 1976 200 53 5 chr4 149318664 149318701 -34969961 - MLT2D LTR ERVL 0 414 380 534 16 0 0 chr4 149318701 149318764 -34969898 + (TG)n Simple_repeat Simple_repeat 2 64 0 1976 200 53 5 chr4 149318764 149319121 -34969541 - MLT2D LTR ERVL -34 380 1 890 212 53 49 chr4 149319121 149319220 -34969442 + MIR SINE MIR 162 259 -3 2425 37 9 46 chr4 149320447 149320770 -34967892 - AluY SINE Alu 0 311 1 842 223 98 12 chr4 149322634 149322949 -34965713 + L1ME3 LINE L1 5697 5979 -183 201 198 240 42 chr4 149323108 149323204 -34965458 + L2 LINE L2 3193 3307 -6 4929 156 27 13 chr4 149323513 149324354 -34964308 + L1MA4 LINE L1 5443 6295 -5 23 0 0 0 chr4 149324392 149324415 -34964247 + AT_rich Low_complexity Low_complexity 1 23 0 2708 242 64 22 chr4 149324441 149325128 -34963534 - MER21B LTR ERV1 -48 815 100 293 329 80 7 chr4 149326326 149326463 -34962199 + MIR SINE MIR 37 183 -79 311 290 175 22 chr4 149328146 149328460 -34960202 + L1ME4a LINE L1 5621 5982 -139 2234 80 0 0 chr4 149328507 149328781 -34959881 + AluY SINE Alu 21 294 -17 180 0 0 0 chr4 149328886 149328906 -34959756 + (CG)n Simple_repeat Simple_repeat 2 21 0 * 432 0 0 0 chr4 149328905 149328953 -34959709 + (CA)n Simple_repeat Simple_repeat 1 48 0 675 67 0 0 chr4 149329821 149329910 -34958752 + (TA)n Simple_repeat Simple_repeat 2 90 0 2333 107 3 3 chr4 149329921 149330231 -34958431 - AluSg SINE Alu 0 310 1 887 228 148 20 chr4 149330775 149331099 -34957563 - MSTC LTR MaLR -2 426 32 283 271 10 31 chr4 149331177 149331273 -34957389 + GA-rich Low_complexity Low_complexity 1 94 0 261 0 0 0 chr4 149331529 149331558 -34957104 + (TC)n Simple_repeat Simple_repeat 1 29 0 186 43 0 0 chr4 149331561 149331584 -34957078 + (CA)n Simple_repeat Simple_repeat 1 23 0 439 282 144 0 chr4 149331957 149332159 -34956503 - MIR SINE MIR -1 261 31 363 193 48 12 chr4 149332197 149332280 -34956382 - L1ME LINE L1 -519 5647 5562 * 1206 214 41 0 chr4 149332279 149332545 -34956117 - L1ME LINE L1 -1774 4372 4096 * 2138 223 80 0 chr4 149332533 149333058 -34955604 + L1MB7 LINE L1 2630 3196 -2950 236 367 53 32 chr4 149336471 149336659 -34952003 - L3 LINE CR1 -114 1463 1272 1509 181 43 11 chr4 149337515 149337791 -34950871 + AluJb SINE Alu 1 285 -27 267 31 0 0 chr4 149337810 149337842 -34950820 + (GAA)n Simple_repeat Simple_repeat 2 33 0 2127 136 0 3 chr4 149338724 149339034 -34949628 - AluSx SINE Alu -3 309 1 1901 190 31 11 chr4 149339086 149339438 -34949224 - MLT1A1 LTR MaLR -1 364 6 1582 214 34 19 chr4 149339442 149339821 -34948841 - MER74A LTR ERVL -39 519 135 432 266 170 17 chr4 149340808 149341049 -34947613 + L2 LINE L2 2373 2650 -664 568 217 61 0 chr4 149341049 149341164 -34947498 - AluJb SINE Alu -20 292 171 569 272 148 15 chr4 149341191 149341362 -34947300 + L2 LINE L2 2674 2821 -492 4089 172 88 13 chr4 149341362 149342130 -34946532 - LTR1B LTR ERV1 0 826 1 569 272 148 15 chr4 149342130 149342448 -34946214 + L2 LINE L2 2821 3248 -65 989 186 5 31 chr4 149343087 149343281 -34945381 + MER5A DNA MER1_type 1 189 0 254 222 202 0 chr4 149343295 149343394 -34945268 - MER5A DNA MER1_type -6 183 65 374 111 0 0 chr4 149343394 149343448 -34945214 - Alu SINE Alu 0 302 249 286 155 0 35 chr4 149343450 149343508 -34945154 - MER5A DNA MER1_type -118 71 16 5039 209 41 42 chr4 149344779 149344952 -34943710 + L1MB7 LINE L1 4026 4198 -1986 2206 127 7 0 chr4 149344952 149345260 -34943402 - AluSq SINE Alu -3 310 1 5039 209 41 42 chr4 149345260 149347236 -34941426 + L1MB7 LINE L1 4198 6168 -16 379 289 47 77 chr4 149349043 149349278 -34939384 + L3 LINE CR1 902 1129 -448 210 235 59 0 chr4 149349565 149349633 -34939029 + MIR SINE MIR 80 151 -111 2233 97 7 0 chr4 149400460 149400748 -34887914 - AluSc SINE Alu -19 290 1 220 366 90 8 chr4 149401132 149401266 -34887396 + MIR SINE MIR 20 164 -98 180 0 0 0 chr4 149401889 149401909 -34886753 + (T)n Simple_repeat Simple_repeat 1 20 0 2384 104 45 20 chr4 149402127 149402482 -34886180 + THE1B LTR MaLR 1 364 0 9108 112 19 3 chr4 149402482 149403766 -34884896 + THE1B-int LTR MaLR 1 1305 -275 260 273 55 45 chr4 149405017 149405127 -34883535 + Charlie2 DNA MER1_type 41 151 -2711 510 222 0 141 chr4 149406577 149406648 -34882014 - MER5A DNA MER1_type -3 186 107 1779 157 24 3 chr4 149406648 149406941 -34881721 + AluJb SINE Alu 1 299 -13 510 222 0 141 chr4 149406941 149407067 -34881595 - MER5A DNA MER1_type -82 107 17 853 312 4 4 chr4 149407172 149407422 -34881240 - MIR SINE MIR 0 262 13 308 292 132 75 chr4 149407473 149407898 -34880764 - L2 LINE L2 -527 2787 2339 3938 141 140 30 chr4 149409067 149409811 -34878851 - LTR12 LTR ERV1 0 826 1 664 209 63 53 chr4 149410047 149410253 -34878409 - pTR5 LTR ERV1 -1489 949 742 262 271 29 0 chr4 149410345 149410415 -34878247 - MIR SINE MIR -112 150 79 2115 199 15 3 chr4 149411769 149412160 -34876502 + MSTD LTR MaLR 1 396 0 2033 178 5 33 chr4 149412623 149413022 -34875640 + MLT1B LTR MaLR 3 390 0 272 211 14 28 chr4 149414554 149414625 -34874037 + (TATG)n Simple_repeat Simple_repeat 3 72 0 189 74 0 0 chr4 149415083 149415110 -34873552 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 6180 69 5 42 chr4 149415112 149415469 -34873193 - L1PB1 LINE L1 0 6151 5782 333 0 0 0 chr4 149415469 149415506 -34873156 + (CA)n Simple_repeat Simple_repeat 2 38 0 6180 69 5 42 chr4 149415506 149415549 -34873113 - L1PB1 LINE L1 -369 5782 5739 2297 104 0 3 chr4 149415549 149415848 -34872814 - AluSg SINE Alu -12 298 1 6180 69 5 42 chr4 149415848 149416327 -34872335 - L1PB1 LINE L1 -412 5739 5304 * 14979 83 4 7 chr4 149416320 149418604 -34870058 - L1P3 LINE L1 -575 5579 3304 504 298 38 38 chr4 149418796 149419031 -34869631 + MIR SINE MIR 3 237 -25 221 320 0 112 chr4 149419427 149419552 -34869110 - L2 LINE L2 0 3272 3162 417 314 51 61 chr4 149419594 149419906 -34868756 - MLT1I LTR MaLR -30 379 71 1275 154 8 17 chr4 149420616 149420850 -34867812 - L1MB3 LINE L1 -15 6168 5937 356 204 161 0 chr4 149420868 149420961 -34867701 - L2 LINE L2 -10 3303 3196 180 0 0 0 chr4 149421851 149421871 -34866791 + (TTTTG)n Simple_repeat Simple_repeat 4 23 0 229 206 38 92 chr4 149422199 149422330 -34866332 + L1ME4a LINE L1 5996 6119 -2 21 36 0 0 chr4 149422613 149422641 -34866021 + AT_rich Low_complexity Low_complexity 1 28 0 269 335 162 0 chr4 149422985 149423152 -34865510 + L2 LINE L2 335 528 -2786 276 294 74 18 chr4 149423548 149423711 -34864951 + L2 LINE L2 1013 1184 -2130 605 210 70 61 chr4 149423773 149424002 -34864660 - MIR SINE MIR -10 252 22 1886 108 0 4 chr4 149424464 149424715 -34863947 + AluSq SINE Alu 48 297 -16 225 171 171 49 chr4 149424751 149424833 -34863829 - Zaphod DNA AcHobo -3939 92 1 417 330 75 29 chr4 149424974 149425322 -34863340 - HAL1 LINE L1 -2143 364 1 304 271 106 26 chr4 149425352 149425726 -34862936 - L1P LINE L1 -740 5411 5007 227 306 56 9 chr4 149427679 149427787 -34860875 + MIR3 SINE MIR 81 193 -15 301 247 14 0 chr4 149428224 149428297 -34860365 - MER5B DNA MER1_type -2 176 103 865 119 0 8 chr4 149428305 149428431 -34860231 - MLT1B LTR MaLR 0 390 266 333 246 0 0 chr4 149428433 149428502 -34860160 - MLT1B LTR MaLR -321 69 1 295 242 61 20 chr4 149428502 149428601 -34860061 - MER5B DNA MER1_type -75 103 1 262 279 0 0 chr4 149428898 149428966 -34859696 + MER116 DNA Mariner 13 80 0 440 272 0 7 chr4 149429017 149429153 -34859509 - MIR SINE MIR -81 181 47 201 108 0 0 chr4 149429397 149429434 -34859228 + (T)n Simple_repeat Simple_repeat 1 37 0 486 258 166 0 chr4 149430615 149430766 -34857896 + MER5A DNA MER1_type 14 189 0 626 251 48 29 chr4 149430862 149431069 -34857593 + L2 LINE L2 3103 3313 0 541 247 68 53 chr4 149432126 149432389 -34856273 + L2 LINE L2 3045 3311 -2 318 258 69 69 chr4 149432408 149432714 -34855948 - L2 LINE L2 -742 2572 2267 335 286 86 35 chr4 149432862 149433117 -34855545 - L1ME4a LINE L1 -19 6102 5835 867 243 78 37 chr4 149433174 149433800 -34854862 - HAL1 LINE L1 -1120 1387 613 329 206 103 0 chr4 149433808 149433876 -34854786 - Zaphod DNA AcHobo 0 4031 3957 1382 196 103 71 chr4 149434021 149434469 -34854193 - MLT1C LTR MaLR 0 467 6 16125 112 8 29 chr4 149434927 149438586 -34850076 - L1P3 LINE L1 -2799 3662 2 11832 191 10 33 chr4 149438606 149439191 -34849471 - L1 LINE L1 -1186 4960 4363 2352 82 0 31 chr4 149439191 149439508 -34849154 - AluY SINE Alu -4 307 1 11832 191 10 33 chr4 149439508 149441841 -34846821 - L1 LINE L1 -1783 4363 2110 2582 65 32 0 chr4 149441852 149442221 -34846441 - L1PBa LINE L1 -4212 2651 2271 2135 139 15 18 chr4 149442596 149442985 -34845677 + THE1-int LTR MaLR 1125 1512 -68 240 324 14 0 chr4 149443039 149443113 -34845549 + Charlie8 DNA MER1_type 1 75 -2342 327 91 18 0 chr4 149443146 149443201 -34845461 + THE1B-int LTR MaLR 1525 1580 0 2338 108 45 14 chr4 149443201 149443554 -34845108 + THE1B LTR MaLR 1 364 0 459 201 209 50 chr4 149443623 149443862 -34844800 - Charlie8 DNA MER1_type -2128 289 13 5448 100 64 2 chr4 149444205 149445506 -34843156 - L1PBa LINE L1 -4700 2163 633 1124 148 5 0 chr4 149445506 149445702 -34842960 - L1PBa LINE L1 -6664 199 3 365 288 81 109 chr4 149446088 149446373 -34842289 - L2 LINE L2 0 3272 2996 285 321 0 61 chr4 149446420 149446551 -34842111 - L2 LINE L2 -1387 1927 1805 26 0 0 0 chr4 149446614 149446640 -34842022 + AT_rich Low_complexity Low_complexity 1 26 0 40 21 0 0 chr4 149446896 149446943 -34841719 + AT_rich Low_complexity Low_complexity 1 47 0 30 0 0 0 chr4 149446954 149446984 -34841678 + AT_rich Low_complexity Low_complexity 1 30 0 23 100 0 0 chr4 149446997 149447057 -34841605 + AT_rich Low_complexity Low_complexity 1 60 0 6033 199 39 74 chr4 149447096 149449083 -34839579 + L1MB7 LINE L1 3115 5012 -1134 2105 124 0 7 chr4 149449083 149449381 -34839281 + AluSx SINE Alu 1 296 -16 6033 199 39 74 chr4 149449381 149449730 -34838932 + L1MB7 LINE L1 5012 5371 -775 350 154 6 7 chr4 149449731 149449914 -34838748 + AluJo SINE Alu 86 302 0 3625 186 35 13 chr4 149449915 149450705 -34837957 + L1MB7 LINE L1 5357 6164 -20 2356 103 0 0 chr4 149451687 149451999 -34836663 + AluSx SINE Alu 1 312 0 22 80 0 0 chr4 149452503 149452553 -34836109 + AT_rich Low_complexity Low_complexity 1 50 0 2926 95 5 14 chr4 149452611 149453044 -34835618 - L1PB1 LINE L1 -13 6138 5710 187 377 49 16 chr4 149453278 149453400 -34835262 - L2 LINE L2 -41 3231 3106 1254 121 17 69 chr4 149453697 149453928 -34834734 + MER20 DNA MER1_type 1 219 0 2156 153 62 5 chr4 149454027 149454400 -34834262 + MSTD LTR MaLR 1 394 -2 5442 197 51 124 chr4 149454404 149456269 -34832393 + MSTD-int LTR MaLR 2 1729 -6 2029 149 105 11 chr4 149456274 149456636 -34832026 + MSTD LTR MaLR 1 396 0 770 179 63 74 chr4 149456855 149457045 -34831617 - MER5A DNA MER1_type -1 188 1 2439 70 3 3 chr4 149457788 149458086 -34830576 - AluSq SINE Alu -15 298 1 39 74 0 0 chr4 149459369 149459450 -34829212 + AT_rich Low_complexity Low_complexity 1 81 0 243 305 140 16 chr4 149459459 149459618 -34829044 - MIR SINE MIR -49 213 22 209 300 17 17 chr4 149459641 149459701 -34828961 + L2 LINE L2 3203 3262 -10 2215 102 7 13 chr4 149459931 149460236 -34828426 - AluSx SINE Alu -9 303 1 585 66 0 0 chr4 149460293 149460369 -34828293 + MADE1 DNA Mariner 2 77 -3 1271 257 60 19 chr4 149460516 149460986 -34827676 + L1MCb LINE L1 3 491 -5554 1357 238 107 14 chr4 149461293 149461937 -34826725 - L1 LINE L1 -2757 3389 2693 1775 177 41 79 chr4 149461945 149462504 -34826158 - LTR55 LTR ERV -10 538 1 484 197 0 16 chr4 149462514 149462641 -34826021 - L1 LINE L1 -3513 2633 2509 271 250 34 34 chr4 149463244 149463332 -34825330 - MER117 DNA MER1_type -3 194 107 5805 232 46 15 chr4 149463333 149465110 -34823552 - L1M4 LINE L1 -797 5349 3519 431 335 45 0 chr4 149465213 149465368 -34823294 + L2 LINE L2 3110 3271 -1 219 255 39 0 chr4 149465767 149465818 -34822844 - MIR SINE MIR -68 140 88 283 307 171 0 chr4 149466548 149466636 -34822026 + L2 LINE L2 3127 3229 -43 376 216 40 0 chr4 149466663 149466737 -34821925 + L2 LINE L2 3235 3311 -2 2120 194 13 13 chr4 149466998 149467394 -34821268 + MSTD LTR MaLR 1 396 0 766 195 0 0 chr4 149467613 149467736 -34820926 - FLAM_A SINE Alu -9 124 2 1873 144 4 21 chr4 149468064 149468448 -34820214 + Tigger3(Golem) DNA MER2_type 2 3027 -2 1361 182 20 4 chr4 149468511 149468764 -34819898 + MLT1A1 LTR MaLR 107 363 -2 189 0 0 0 chr4 149473619 149473640 -34815022 + (A)n Simple_repeat Simple_repeat 1 21 0 272 336 96 0 chr4 149477914 149478018 -34810644 + MIR3 SINE MIR 82 195 -13 388 203 23 105 chr4 149478655 149478762 -34809900 + MER5A DNA MER1_type 43 139 -50 1658 80 4 9 chr4 149478762 149478988 -34809674 - AluY SINE Alu -2 309 85 388 203 23 105 chr4 149478988 149479013 -34809649 + MER5A DNA MER1_type 139 164 -25 272 313 0 12 chr4 149479096 149479176 -34809486 - L2 LINE L2 -3 3310 3232 181 327 19 0 chr4 149479461 149479513 -34809149 - MIR SINE MIR -6 256 204 14272 114 30 24 chr4 149480541 149482916 -34805746 + Tigger1 DNA MER2_type 30 2418 0 195 220 0 0 chr4 149482921 149482971 -34805691 + (TA)n Simple_repeat Simple_repeat 1 50 0 862 232 41 8 chr4 149482984 149483230 -34805432 - L1ME3A LINE L1 -24 6146 5893 738 175 80 0 chr4 149483440 149483640 -34805022 + Charlie5 DNA MER1_type 2370 2585 -27 2480 86 0 3 chr4 149484145 149484458 -34804204 - AluSq SINE Alu 0 313 2 180 111 0 0 chr4 149485018 149485045 -34803617 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 1708 211 241 14 chr4 149485853 149486435 -34802227 - MER21B LTR ERV1 -52 811 98 1618 284 50 5 chr4 149486940 149487636 -34801026 + ERVL LTR ERVL 3668 4413 -1351 299 92 40 66 chr4 149487636 149487712 -34800950 + THE1B LTR MaLR 1 74 -290 550 277 63 83 chr4 149487836 149488089 -34800573 + L2 LINE L2 3025 3272 0 209 354 173 31 chr4 149488227 149488453 -34800209 - L2 LINE L2 -604 2710 2453 201 204 20 0 chr4 149488684 149488733 -34799929 + (TA)n Simple_repeat Simple_repeat 2 51 0 221 57 29 0 chr4 149488769 149488804 -34799858 + (TA)n Simple_repeat Simple_repeat 2 37 0 1629 171 62 0 chr4 149489068 149489389 -34799273 + L1MB8 LINE L1 5343 5683 -495 1223 133 4 89 chr4 149489402 149489627 -34799035 + AluJo SINE Alu 87 292 -20 2363 188 22 10 chr4 149489628 149490122 -34798540 + L1MB8 LINE L1 5679 6178 0 2394 84 0 0 chr4 149490372 149490682 -34797980 + AluY SINE Alu 1 310 -1 261 239 34 68 chr4 149490884 149490972 -34797690 + MIR3 SINE MIR 120 204 -4 368 278 143 38 chr4 149492836 149493045 -34795617 - MIR SINE MIR -19 243 13 270 64 0 21 chr4 149493522 149493569 -34795093 + MADE1 DNA Mariner 35 80 0 2247 87 0 10 chr4 149493837 149494126 -34794536 + AluSx SINE Alu 1 286 -26 762 203 18 6 chr4 149494271 149494434 -34794228 - MER5B DNA MER1_type -13 165 1 180 0 0 0 chr4 149494515 149494535 -34794127 + (TTCC)n Simple_repeat Simple_repeat 4 23 0 212 191 133 105 chr4 149496524 149496629 -34792033 + MIR SINE MIR 81 188 -74 2398 142 5 34 chr4 149498239 149498283 -34790379 - MER57A LTR ERV1 0 403 359 1988 130 0 17 chr4 149498283 149498584 -34790078 - AluSx SINE Alu -16 296 1 2398 142 5 34 chr4 149498584 149498954 -34789708 - MER57A LTR ERV1 -44 359 1 333 172 0 0 chr4 149499274 149499338 -34789324 + (CA)n Simple_repeat Simple_repeat 1 64 0 337 264 136 25 chr4 149501562 149501804 -34786858 + L1ME LINE L1 5533 5801 -320 384 204 53 61 chr4 149501860 149501992 -34786670 + MLT1I LTR MaLR 318 407 -2 202 104 21 21 chr4 149502892 149502940 -34785722 + (TTA)n Simple_repeat Simple_repeat 3 50 0 183 263 0 18 chr4 149503680 149503737 -34784925 + MER5B DNA MER1_type 2 57 -121 6481 85 9 10 chr4 149503738 149505130 -34783532 - L1PA7 LINE L1 -377 5777 4383 2844 53 6 0 chr4 149505130 149505482 -34783180 + L1PA7 LINE L1 5795 6154 0 250 279 171 27 chr4 149505612 149505723 -34782939 - MER5B DNA MER1_type -48 130 4 180 77 0 0 chr4 149507385 149507411 -34781251 + (TA)n Simple_repeat Simple_repeat 1 26 0 585 347 89 32 chr4 149508648 149509144 -34779518 + L1MEd LINE L1 12 535 -5584 1920 152 43 27 chr4 149509509 149509877 -34778785 - MLT1A2 LTR MaLR 0 374 1 211 302 147 16 chr4 149509888 149510017 -34778645 + MIR SINE MIR 46 191 -71 24 32 0 0 chr4 149510854 149510885 -34777777 + AT_rich Low_complexity Low_complexity 1 31 0 1332 238 17 46 chr4 149512219 149512635 -34776027 - L1M4 LINE L1 -2232 3914 3511 607 286 11 11 chr4 149513604 149513793 -34774869 + LTR33 LTR ERVL 1 189 -332 424 221 16 16 chr4 149513915 149513996 -34774666 + LTR33 LTR ERVL 393 476 -45 264 30 0 0 chr4 149513996 149514029 -34774633 + (CA)n Simple_repeat Simple_repeat 2 34 0 424 221 16 16 chr4 149514029 149514074 -34774588 + LTR33 LTR ERVL 475 519 -2 341 310 69 5 chr4 149514078 149514281 -34774381 - MARNA DNA Mariner -283 303 88 334 276 35 9 chr4 149514196 149514312 -34774350 + MARNA DNA Mariner 410 528 -58 * 249 159 0 0 chr4 149515366 149515410 -34773252 + (TA)n Simple_repeat Simple_repeat 1 44 0 196 287 69 23 chr4 149515566 149515653 -34773009 - MIR3 SINE MIR -6 202 112 264 234 52 26 chr4 149518319 149518396 -34770266 + L2 LINE L2 2290 2368 -946 313 344 143 23 chr4 149518486 149519323 -34769339 - L2 LINE L2 -218 3054 2127 3137 189 48 11 chr4 149519693 149520321 -34768341 - MER82 DNA MER2_type 0 653 3 561 213 73 13 chr4 149520526 149520676 -34767986 + MIR3 SINE MIR 43 201 -7 204 97 0 0 chr4 149521422 149521453 -34767209 + (CA)n Simple_repeat Simple_repeat 1 31 0 438 349 24 34 chr4 149521590 149521799 -34766863 - MER115 DNA AcHobo -399 294 88 353 257 14 0 chr4 149522208 149522282 -34766380 + L2 LINE L2 3239 3313 0 441 0 0 0 chr4 149523259 149523308 -34765354 + (TG)n Simple_repeat Simple_repeat 2 50 0 357 231 41 16 chr4 149523313 149523434 -34765228 + L1ME4a LINE L1 5976 6099 -22 322 20 0 41 chr4 149523814 149523863 -34764799 + (CA)n Simple_repeat Simple_repeat 2 48 0 222 255 21 85 chr4 149523873 149524014 -34764648 + L2 LINE L2 3014 3145 -168 399 333 83 6 chr4 149524370 149524550 -34764112 + MIR SINE MIR 47 240 -22 2093 120 0 37 chr4 149525773 149526097 -34762565 - AluSx SINE Alu 0 312 1 1259 190 0 0 chr4 149526124 149526335 -34762327 + AluJo SINE Alu 85 295 -17 2825 132 4 4 chr4 149527137 149527592 -34761070 + L1PA16 LINE L1 5703 6157 -9 228 319 43 43 chr4 149528032 149528220 -34760442 + L2 LINE L2 2819 3006 -266 373 236 46 9 chr4 149528533 149528668 -34759994 + L1ME1 LINE L1 6018 6132 -34 231 256 58 58 chr4 149530951 149531072 -34757590 + MIR SINE MIR 97 217 -45 269 211 0 0 chr4 149531146 149531198 -34757464 - L2 LINE L2 0 3313 3262 282 253 53 0 chr4 149531389 149531464 -34757198 - L2 LINE L2 -1 3271 3193 230 259 12 47 chr4 149531576 149531661 -34757001 + MIR SINE MIR 60 141 -67 2321 88 0 23 chr4 149531911 149532219 -34756443 + AluSx SINE Alu 2 302 -10 15570 121 14 22 chr4 149532299 149535661 -34753001 - L1PA10 LINE L1 0 6168 2792 566 217 24 123 chr4 149535711 149535923 -34752739 - MLT1A1 LTR MaLR -174 191 1 254 278 99 28 chr4 149537701 149537913 -34750749 + L1M3 LINE L1 4942 5168 -978 672 274 118 36 chr4 149538038 149538563 -34750099 + L1M3 LINE L1 5259 5841 -338 305 289 102 53 chr4 149538740 149538927 -34749735 - L1ME LINE L1 -612 5550 5355 1068 144 16 32 chr4 149538975 149539163 -34749499 + AluJb SINE Alu 1 185 -127 860 124 7 36 chr4 149539193 149539330 -34749332 + FLAM_C SINE Alu 1 133 0 2234 104 13 0 chr4 149539913 149540220 -34748442 - AluY SINE Alu 0 311 1 264 59 0 0 chr4 149540230 149540264 -34748398 + (T)n Simple_repeat Simple_repeat 1 34 0 1788 153 16 39 chr4 149542334 149542642 -34746020 - AluJo SINE Alu -11 301 1 1225 232 3 38 chr4 149544415 149544708 -34743954 + AluJb SINE Alu 2 284 -18 314 246 44 26 chr4 149544792 149544906 -34743756 - L1M4 LINE L1 -2950 3196 3081 244 214 0 43 chr4 149544908 149544978 -34743684 + T-rich Low_complexity Low_complexity 5 71 0 216 0 0 0 chr4 149545140 149545164 -34743498 + (A)n Simple_repeat Simple_repeat 1 24 0 964 175 0 0 chr4 149545178 149545338 -34743324 + FRAM SINE Alu 12 171 -5 1131 112 0 0 chr4 149545349 149545519 -34743143 + (GGGA)n Simple_repeat Simple_repeat 3 172 0 442 308 15 8 chr4 149545986 149546119 -34742543 + MIR3 SINE MIR 64 197 -11 2186 118 7 0 chr4 149546119 149546423 -34742239 - AluSc SINE Alu -3 306 1 302 289 41 10 chr4 149546806 149546903 -34741759 + MIR SINE MIR 71 170 -92 246 62 0 0 chr4 149547996 149548028 -34740634 + (TG)n Simple_repeat Simple_repeat 2 33 0 450 0 0 0 chr4 149548130 149548180 -34740482 + (TTATA)n Simple_repeat Simple_repeat 5 54 0 341 64 0 0 chr4 149548951 149548998 -34739664 + L1MB3 LINE L1 6097 6143 -40 1010 156 0 35 chr4 149548999 149549172 -34739490 + FRAM SINE Alu 1 167 -9 285 16 16 97 chr4 149549173 149549235 -34739427 + L1MB4 LINE L1 6124 6180 0 243 352 39 39 chr4 149549781 149549909 -34738753 - L2 LINE L2 -12 3260 3133 574 248 173 3 chr4 149550491 149550671 -34737991 - MIR SINE MIR -28 234 28 347 228 64 58 chr4 149551737 149551908 -34736754 + MLT1I LTR MaLR 35 206 -203 201 39 0 0 chr4 149555816 149555842 -34732820 + (T)n Simple_repeat Simple_repeat 1 26 0 254 164 98 0 chr4 149557150 149557211 -34731451 + MIR SINE MIR 62 128 -134 1035 204 28 20 chr4 149558455 149558705 -34729957 + THE1C LTR MaLR 124 375 0 10253 120 11 32 chr4 149558705 149560319 -34728343 + THE1C-int LTR MaLR 1 1580 0 2026 141 24 29 chr4 149560319 149560696 -34727966 + THE1C LTR MaLR 1 375 0 1802 270 89 21 chr4 149560697 149561305 -34727357 + HERVL-F LTR ERVL 4371 5019 -635 560 234 26 13 chr4 149561338 149561492 -34727170 + HERVL-F LTR ERVL 5261 5416 -348 808 144 88 0 chr4 149561560 149561685 -34726977 - AluJ SINE Alu -23 289 154 646 178 0 0 chr4 149561686 149561793 -34726869 - AluJ SINE Alu -205 107 1 284 206 62 0 chr4 149561915 149562012 -34726650 + HERVL-F LTR ERVL 5620 5722 -42 811 271 180 48 chr4 149562033 149562615 -34726047 + MLT2F LTR ERVL 1 659 -4 183 80 0 0 chr4 149562855 149562880 -34725782 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 196 279 31 124 chr4 149562894 149563023 -34725639 + L2 LINE L2 1851 1967 -1347 434 252 43 26 chr4 149563051 149563166 -34725496 + L2 LINE L2 3191 3307 -6 1651 146 86 11 chr4 149563166 149563434 -34725228 + AluSx SINE Alu 1 288 -24 315 293 0 0 chr4 149563623 149563705 -34724957 - L2 LINE L2 0 3313 3232 222 335 117 68 chr4 149564057 149564364 -34724298 + L2 LINE L2 2942 3263 -9 369 0 0 0 chr4 149564937 149564978 -34723684 + (CA)n Simple_repeat Simple_repeat 2 42 0 243 250 183 0 chr4 149567183 149567287 -34721375 + MIR3 SINE MIR 81 203 -5 582 315 51 51 chr4 149567782 149568279 -34720383 + L2 LINE L2 2766 3248 -65 958 151 57 10 chr4 149568322 149568514 -34720148 + MER3 DNA MER1_type 1 201 -8 2217 126 3 0 chr4 149570208 149570517 -34718145 - AluSx SINE Alu -2 310 1 188 344 0 16 chr4 149572146 149572207 -34716455 + MIR3 SINE MIR 123 182 -26 2277 120 19 19 chr4 149572968 149573343 -34715319 - THE1C LTR MaLR 0 375 1 288 53 0 0 chr4 149574070 149574108 -34714554 + (T)n Simple_repeat Simple_repeat 1 38 0 766 225 53 54 chr4 149575383 149575926 -34712736 - MER51A LTR ERV1 0 640 1 455 324 24 6 chr4 149576395 149576565 -34712097 + MIR SINE MIR 90 262 0 1698 129 7 3 chr4 149578103 149578390 -34710272 + L1MA6 LINE L1 6013 6300 0 9849 209 60 36 chr4 149578393 149579259 -34709403 + L1MC3 LINE L1 922 1765 -4661 2177 116 20 0 chr4 149579259 149579561 -34709101 - AluSg SINE Alu -2 308 1 9849 209 60 36 chr4 149579561 149580217 -34708445 + L1MC3 LINE L1 1765 2404 -4022 802 157 8 15 chr4 149580217 149580351 -34708311 + AluJo/FLAM SINE Alu 1 133 -169 1773 187 7 3 chr4 149580354 149580654 -34708008 + AluJb SINE Alu 1 301 -11 9849 209 60 36 chr4 149580654 149581545 -34707117 + L1MC3 LINE L1 2405 3273 -3153 1965 146 7 13 chr4 149581545 149581847 -34706815 + AluJo SINE Alu 1 300 -12 9849 209 60 36 chr4 149581847 149583731 -34704931 + L1MC3 LINE L1 3273 4429 -1997 2367 87 0 3 chr4 149583731 149584041 -34704621 + AluY SINE Alu 1 309 -2 9849 209 60 36 chr4 149584041 149585327 -34703335 + L1MC3 LINE L1 4429 5682 -744 2086 137 0 7 chr4 149586435 149586742 -34701920 - AluSx SINE Alu 0 312 8 371 202 11 0 chr4 149586972 149587061 -34701601 + CT-rich Low_complexity Low_complexity 3 92 0 1675 166 58 0 chr4 149588262 149588540 -34700122 - AluJb SINE Alu -18 294 1 390 268 36 7 chr4 149589326 149589464 -34699198 - MER117 DNA MER1_type -53 144 3 2168 114 3 0 chr4 149592310 149592608 -34696054 + AluSx SINE Alu 9 307 -5 285 29 0 0 chr4 149592608 149592642 -34696020 + (CA)n Simple_repeat Simple_repeat 2 35 0 510 311 89 18 chr4 149592892 149593117 -34695545 - MIR SINE MIR -16 246 6 365 195 0 97 chr4 149593558 149593743 -34694919 + C-rich Low_complexity Low_complexity 6 172 0 810 165 224 52 chr4 149595735 149596007 -34692655 + MER33 DNA MER1_type 5 323 -1 782 142 0 0 chr4 149596102 149596222 -34692440 + FLAM_A SINE Alu 1 120 -22 182 367 92 9 chr4 149597667 149597776 -34690886 + MIR SINE MIR 49 166 -96 560 303 17 46 chr4 149597840 149598015 -34690647 + MER5B DNA MER1_type 9 178 0 244 237 53 6 chr4 149598019 149598127 -34690535 - MER5B DNA MER1_type -1 177 1 2814 89 65 0 chr4 149599324 149599739 -34688923 + L1PA10 LINE L1 5721 6162 -6 299 210 16 16 chr4 149600384 149600446 -34688216 + MER5B DNA MER1_type 58 119 -59 249 57 0 0 chr4 149600453 149600488 -34688174 + (A)n Simple_repeat Simple_repeat 1 35 0 2728 174 43 10 chr4 149600497 149601082 -34687580 + L1MC3 LINE L1 5816 6419 -1366 2764 132 53 29 chr4 149601086 149601138 -34687524 + L1MC3 LINE L1 6560 6609 -1176 351 78 0 0 chr4 149601138 149601189 -34687473 + (TG)n Simple_repeat Simple_repeat 2 52 0 2764 132 53 29 chr4 149601189 149601683 -34686979 + L1MC3 LINE L1 6609 7119 -666 1640 180 23 29 chr4 149601683 149602028 -34686634 + MLT2C1 LTR ERVL 1 343 -54 387 185 0 11 chr4 149602030 149602122 -34686540 + L1MC3 LINE L1 7677 7767 -18 314 106 21 0 chr4 149602138 149602185 -34686477 - MER5B DNA MER1_type -129 49 2 2419 84 0 7 chr4 149602608 149602916 -34685746 - AluSg SINE Alu -4 306 1 212 86 29 0 chr4 149603207 149603242 -34685420 + (TCC)n Simple_repeat Simple_repeat 3 38 0 193 243 314 0 chr4 149605300 149605370 -34683292 - L2 LINE L2 -5 3308 3217 201 243 187 47 chr4 149605857 149605964 -34682698 - MIR3 SINE MIR -46 162 41 206 204 0 19 chr4 149606528 149606582 -34682080 + (TGGA)n Simple_repeat Simple_repeat 2 54 0 26 0 0 0 chr4 149608381 149608407 -34680255 + AT_rich Low_complexity Low_complexity 1 26 0 659 224 168 6 chr4 149609017 149609196 -34679466 + L2 LINE L2 3106 3313 0 949 151 22 16 chr4 149609562 149609747 -34678915 - MER61E LTR ERV1 -43 526 341 419 248 23 23 chr4 149609907 149610036 -34678626 - LTR25 LTR ERV1 -418 376 248 816 119 6 81 chr4 149610668 149610828 -34677834 + MLT2A1 LTR ERVL 5 152 -292 505 103 0 0 chr4 149610832 149610900 -34677762 - AluS SINE Alu -242 71 4 26 0 0 0 chr4 149610908 149610934 -34677728 + AT_rich Low_complexity Low_complexity 1 26 0 1891 136 0 7 chr4 149611122 149611409 -34677253 - AluJb SINE Alu -4 308 24 249 231 265 37 chr4 149611800 149611945 -34676717 - MIR SINE MIR -40 168 37 238 221 29 58 chr4 149612409 149612450 -34676212 - MER33 DNA MER1_type -2262 362 321 2232 124 0 7 chr4 149612450 149612757 -34675905 - AluSx SINE Alu -7 305 1 238 221 29 58 chr4 149612757 149612819 -34675843 - MER33 DNA MER1_type -2303 321 262 1885 159 7 3 chr4 149612840 149613135 -34675527 - AluJo SINE Alu -16 296 1 590 167 142 25 chr4 149613148 149613352 -34675310 - MER33 DNA MER1_type -89 235 8 435 345 56 39 chr4 149613359 149613680 -34674982 + L2 LINE L2 2684 2998 -274 569 216 0 11 chr4 149613721 149613897 -34674765 + (CCA)n Simple_repeat Simple_repeat 1 174 0 * 639 182 11 17 chr4 149613882 149614058 -34674604 + (CACCAT)n Simple_repeat Simple_repeat 3 177 0 1290 182 123 19 chr4 149614977 149615285 -34673377 - MER2 DNA MER2_type 0 345 6 405 0 0 0 chr4 149618000 149618045 -34670617 + (CA)n Simple_repeat Simple_repeat 2 46 0 23 0 0 0 chr4 149618810 149618833 -34669829 + AT_rich Low_complexity Low_complexity 1 23 0 626 191 0 56 chr4 149619081 149619243 -34669419 - L1MA10 LINE L1 0 6334 6182 1375 176 25 97 chr4 149619287 149619680 -34668982 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chr4 149619700 149619722 -34668940 + AT_rich Low_complexity Low_complexity 1 22 0 327 250 137 46 chr4 149619762 149620046 -34668616 - L1M4 LINE L1 -1077 5069 4760 1281 241 63 8 chr4 149620159 149620502 -34668160 - L1M4 LINE L1 -1430 4716 4331 2243 156 55 31 chr4 149620502 149620918 -34667744 + MSTB LTR MaLR 1 426 0 1281 241 63 8 chr4 149620918 149621110 -34667552 - L1M4 LINE L1 -1815 4331 4151 589 332 22 51 chr4 149621195 149621605 -34667057 - MER31-int LTR ERV1 -885 6652 6255 2432 208 46 42 chr4 149622055 149622723 -34665939 - MER31-int LTR ERV1 -1782 5755 5085 450 236 30 51 chr4 149622768 149623001 -34665661 - MER31-int LTR ERV1 -1696 4457 3078 350 299 75 79 chr4 149623302 149623580 -34665082 - L2 LINE L2 -11 3261 2985 243 0 0 0 chr4 149624510 149624537 -34664125 + (TA)n Simple_repeat Simple_repeat 1 27 0 232 102 41 20 chr4 149624603 149624652 -34664010 + L1MA9 LINE L1 5164 5213 -933 1478 85 137 7 chr4 149624655 149624925 -34663737 + L1MA2 LINE L1 6000 6304 0 5551 122 48 20 chr4 149624956 149626041 -34662621 + L1MA9 LINE L1 5197 6311 -1 25 0 0 0 chr4 149626369 149626394 -34662268 + AT_rich Low_complexity Low_complexity 1 25 0 184 345 0 0 chr4 149626679 149626737 -34661925 - L2 LINE L2 -2 3311 3254 288 217 17 0 chr4 149627162 149627222 -34661440 - MER81 DNA DNA -2 112 52 293 234 27 81 chr4 149627290 149627401 -34661261 + MIR SINE MIR 9 113 -149 960 291 76 28 chr4 149627429 149627758 -34660904 + L2 LINE L2 2820 3180 -133 1325 218 152 64 chr4 149627758 149628303 -34660359 + MLT1E LTR MaLR 1 593 0 960 291 76 28 chr4 149628303 149628444 -34660218 + L2 LINE L2 3180 3313 0 1687 154 89 52 chr4 149628581 149628963 -34659699 + MSTD LTR MaLR 1 396 0 6598 141 43 6 chr4 149629231 149630418 -34658244 + Tigger3b DNA MER2_type 1 1231 0 253 312 16 40 chr4 149631644 149631769 -34656893 + MLT1J2 LTR MaLR 41 162 -284 1134 171 71 34 chr4 149631965 149632313 -34656349 + MSTD LTR MaLR 1 396 0 1718 187 120 39 chr4 149633588 149634054 -34654608 + MLT1D LTR MaLR 1 504 -1 24 0 0 0 chr4 149634179 149634203 -34654459 + AT_rich Low_complexity Low_complexity 1 24 0 893 130 7 27 chr4 149634383 149634521 -34654141 + AluJo SINE Alu 1 137 -175 1718 190 10 10 chr4 149634521 149634816 -34653846 + AluJb SINE Alu 1 295 -17 939 226 58 23 chr4 149634973 149635282 -34653380 - MER57B-int LTR ERV1 -2142 2794 2475 513 208 76 76 chr4 149635277 149635689 -34652973 - MER57B-int LTR ERV1 -2554 2569 2110 * 575 192 0 0 chr4 149635713 149635817 -34652845 - FLAM_C SINE Alu -15 128 25 6597 122 14 18 chr4 149636007 149638051 -34650611 + L1MA3 LINE L1 4271 6305 0 3609 120 10 6 chr4 149638160 149638669 -34649993 + MER9 LTR ERVK 1 511 0 4661 88 18 21 chr4 149638669 149639338 -34649324 + HERVK9 LTR ERVK 1 667 -5249 * 31184 86 3 1 chr4 149639334 149643336 -34645326 + HERVK9 LTR ERVK 1626 5634 -282 2236 82 0 0 chr4 149643431 149643713 -34644949 + HERVK9 LTR ERVK 5635 5916 0 3506 121 12 6 chr4 149643715 149644220 -34644442 + MER9 LTR ERVK 4 511 0 694 248 15 79 chr4 149644401 149644667 -34643995 - MER57B-int LTR ERV1 -7286 251 3 810 258 51 57 chr4 149644672 149645113 -34643549 - MER57B LTR ERV1 0 434 1 2070 239 112 27 chr4 149645129 149646193 -34642469 - L1MEc LINE L1 -2848 3367 2214 573 105 0 0 chr4 149646259 149646335 -34642327 + MSTD LTR MaLR 1 76 -320 641 102 0 0 chr4 149646337 149646425 -34642237 - AluY SINE Alu -8 303 216 1589 208 51 0 chr4 149646425 149646738 -34641924 + MSTD LTR MaLR 68 396 0 309 289 58 25 chr4 149646739 149646860 -34641802 - L1MEc LINE L1 -4182 2214 2090 214 211 18 0 chr4 149647026 149647083 -34641579 + T-rich Low_complexity Low_complexity 4 61 0 180 111 0 0 chr4 149647245 149647272 -34641390 + (TC)n Simple_repeat Simple_repeat 1 27 0 2236 124 3 0 chr4 149649908 149650215 -34638447 - AluSx SINE Alu -4 308 1 232 314 54 66 chr4 149650223 149650397 -34638265 - MIR SINE MIR -39 223 42 1259 151 23 9 chr4 149650592 149650811 -34637851 + AluJo SINE Alu 1 222 -90 189 0 0 0 chr4 149651168 149651189 -34637473 + (T)n Simple_repeat Simple_repeat 1 21 0 5150 49 7 0 chr4 149651416 149652012 -34636650 - L1PA6 LINE L1 0 6154 5555 2094 173 14 14 chr4 149652133 149652497 -34636165 + MLT1A1 LTR MaLR 2 365 0 328 248 129 10 chr4 149654422 149654523 -34634139 + L2 LINE L2 3194 3306 -7 1924 121 4 11 chr4 149654891 149655163 -34633499 + AluSx SINE Alu 13 282 -30 257 68 23 0 chr4 149655181 149655225 -34633437 + (TA)n Simple_repeat Simple_repeat 2 46 0 7488 187 43 11 chr4 149655759 149658522 -34630140 + L1M1 LINE L1 1 2851 -3477 273 116 0 0 chr4 149658672 149658715 -34629947 - MLT2A1 LTR ERVL -8 436 394 295 185 45 19 chr4 149658736 149658893 -34629769 + (TA)n Simple_repeat Simple_repeat 2 162 0 334 198 50 10 chr4 149658896 149658997 -34629665 + (CATA)n Simple_repeat Simple_repeat 4 108 0 3165 73 5 2 chr4 149659005 149659404 -34629258 - MLT2A1 LTR ERVL -44 400 1 2541 51 7 0 chr4 149659415 149659710 -34628952 - AluY SINE Alu -14 297 1 11528 160 48 14 chr4 149659716 149660914 -34627748 + L1M1 LINE L1 3283 4438 -2044 1363 169 75 18 chr4 149660914 149661192 -34627470 + AluJb SINE Alu 2 295 -17 11528 160 48 14 chr4 149661192 149662410 -34626252 + L1M1 LINE L1 4438 5788 -694 2222 112 0 0 chr4 149662410 149662705 -34625957 + AluSx SINE Alu 1 295 -17 609 160 30 0 chr4 149662719 149662819 -34625843 + AluSq/x SINE Alu 2 104 -208 600 292 86 57 chr4 149662841 149663248 -34625414 + L2 LINE L2 529 947 -2367 1149 298 154 38 chr4 149663846 149664517 -34624145 + L2 LINE L2 1269 2091 -1223 2242 108 6 25 chr4 149664517 149664832 -34623830 - AluSx SINE Alu -3 309 1 1149 298 154 38 chr4 149664832 149665138 -34623524 + L2 LINE L2 2091 2360 -954 2594 110 8 8 chr4 149665155 149665510 -34623152 - THE1A LTR MaLR 0 355 1 6453 87 18 2 chr4 149665510 149666353 -34622309 - THE1A-int LTR MaLR 0 1580 725 692 181 0 11 chr4 149666470 149666652 -34622010 + (CCA)n Simple_repeat Simple_repeat 1 180 0 217 116 0 47 chr4 149666653 149666696 -34621966 + (CACCAT)n Simple_repeat Simple_repeat 4 44 0 665 192 0 8 chr4 149666699 149666952 -34621710 + (CCA)n Simple_repeat Simple_repeat 1 250 0 381 328 94 8 chr4 149667084 149667212 -34621450 + L2 LINE L2 3134 3272 0 317 299 136 0 chr4 149667350 149667504 -34621158 - MIR SINE MIR -11 251 77 783 158 0 0 chr4 149667641 149667755 -34620907 - AluSg/x SINE Alu -11 301 188 21 0 0 0 chr4 149667769 149667790 -34620872 + AT_rich Low_complexity Low_complexity 1 21 0 264 284 0 0 chr4 149668035 149668109 -34620553 + MIR SINE MIR 184 257 -5 378 42 0 0 chr4 149668111 149668159 -34620503 + (CAT)n Simple_repeat Simple_repeat 2 49 0 1703 134 197 11 chr4 149668263 149668547 -34620115 - MER1B DNA MER1_type 0 337 1 347 331 79 7 chr4 149668706 149668845 -34619817 + MIR SINE MIR 2 150 -112 215 239 377 31 chr4 149669365 149669495 -34619167 + MIR SINE MIR 51 225 -37 297 0 0 0 chr4 149669496 149669529 -34619133 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 263 280 65 21 chr4 149669542 149669635 -34619027 + L2 LINE L2 2994 3090 -182 1727 163 24 0 chr4 149671360 149671654 -34617008 + L1PA16 LINE L1 5866 6166 0 1950 108 21 87 chr4 149672111 149672445 -34616217 - AluSx SINE Alu 0 312 1 200 283 0 0 chr4 149672997 149673043 -34615619 + GA-rich Low_complexity Low_complexity 3 48 0 1780 166 17 0 chr4 149673354 149673644 -34615018 - AluJo SINE Alu -17 295 1 2057 142 10 0 chr4 149673770 149674065 -34614597 - AluSx SINE Alu -14 298 1 662 211 78 64 chr4 149674411 149674495 -34614167 - MER3 DNA MER1_type 0 209 128 1869 165 0 13 chr4 149674495 149674810 -34613852 - AluJo SINE Alu 0 312 2 662 211 78 64 chr4 149674810 149674829 -34613833 - MER3 DNA MER1_type -81 128 111 1964 118 69 3 chr4 149674829 149675118 -34613544 - AluSq SINE Alu -5 308 1 662 211 78 64 chr4 149675118 149675217 -34613445 - MER3 DNA MER1_type -98 111 3 758 175 0 0 chr4 149675365 149675479 -34613183 - FLAM_A SINE Alu -11 131 18 2703 129 40 26 chr4 149675479 149675899 -34612763 + MSTA LTR MaLR 1 426 -2 37 52 0 0 chr4 149676038 149676096 -34612566 + AT_rich Low_complexity Low_complexity 1 58 0 1932 141 3 32 chr4 149676930 149677243 -34611419 - AluJb SINE Alu -8 304 1 236 192 0 0 chr4 149677591 149677661 -34611001 + A-rich Low_complexity Low_complexity 1 70 0 252 281 21 52 chr4 149678824 149678920 -34609742 + L3 LINE CR1 1449 1541 -36 182 233 100 33 chr4 149679426 149679486 -34609176 + L2 LINE L2 3161 3224 -89 205 274 0 0 chr4 149681168 149681219 -34607443 + (CATA)n Simple_repeat Simple_repeat 4 54 0 1096 175 26 70 chr4 149681415 149681643 -34607019 + MER20 DNA MER1_type 2 219 0 264 290 0 0 chr4 149681773 149681835 -34606827 - MER2 DNA MER2_type 0 345 284 * 396 224 51 21 chr4 149681822 149681956 -34606706 - MER2 DNA MER2_type -92 147 1 1386 205 70 133 chr4 149682449 149683102 -34605560 + L1MC4 LINE L1 7431 8042 0 285 282 138 43 chr4 149683308 149683496 -34605166 + MLT1L LTR MaLR 410 615 0 36 40 0 0 chr4 149683870 149683920 -34604742 + AT_rich Low_complexity Low_complexity 1 50 0 2915 257 62 52 chr4 149683929 149685172 -34603490 + L1MC4 LINE L1 6787 8042 0 3113 165 25 8 chr4 149685233 149685749 -34602913 + Tigger7 DNA MER2_type 1 525 -208 345 117 106 128 chr4 149685743 149685837 -34602825 + Tigger7 DNA MER2_type 2496 2587 0 * 308 156 0 65 chr4 149687433 149687510 -34601152 + AluJ/FRAM SINE Alu 231 302 0 27 29 0 0 chr4 149689137 149689171 -34599491 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr4 149689186 149689217 -34599445 + AT_rich Low_complexity Low_complexity 1 31 0 329 249 45 50 chr4 149690830 149691000 -34597662 - L1MC/D LINE L1 -469 5652 5484 1633 159 0 102 chr4 149692317 149692651 -34596011 + AluJo SINE Alu 2 301 -1 22 0 0 0 chr4 149693299 149693321 -34595341 + AT_rich Low_complexity Low_complexity 1 22 0 2382 57 0 3 chr4 149693617 149693923 -34594739 - AluY SINE Alu 0 305 1 390 256 47 70 chr4 149694165 149694294 -34594368 - L2 LINE L2 -1 3312 3187 2007 138 3 0 chr4 149694897 149695203 -34593459 - AluSx SINE Alu 0 307 1 674 127 0 27 chr4 149695766 149695876 -34592786 - FLAM_A SINE Alu -1 141 35 849 147 0 15 chr4 149696094 149696230 -34592432 - FLAM_C SINE Alu -3 140 7 827 201 148 41 chr4 149696748 149696992 -34591670 - LOR1b LTR ERV1 0 461 192 328 164 15 0 chr4 149696989 149697056 -34591606 - LOR1a LTR ERV1 -189 308 241 * 662 191 236 11 chr4 149697149 149697327 -34591335 - MIR SINE MIR -27 235 18 1950 132 3 24 chr4 149697586 149697882 -34590780 + AluJo SINE Alu 1 290 -22 284 216 88 56 chr4 149698038 149698163 -34590499 - MLT1J LTR MaLR -49 462 334 425 94 31 0 chr4 149698177 149698241 -34590421 - MER58 DNA MER1_type 0 2420 2355 202 284 34 3 chr4 149698336 149698470 -34590192 - MER5A DNA MER1_type 0 189 9 241 248 277 0 chr4 149698527 149698664 -34589998 - MLT1J LTR MaLR -265 246 72 1661 150 64 11 chr4 149699583 149699863 -34588799 + AluJb SINE Alu 1 295 -17 642 272 119 39 chr4 149699980 149700054 -34588608 + L2 LINE L2 2920 2987 -326 2187 109 7 3 chr4 149700054 149700357 -34588305 - AluSx SINE Alu -8 304 1 642 272 119 39 chr4 149700357 149700642 -34588020 + L2 LINE L2 2987 3308 -5 1961 187 67 2 chr4 149700869 149701286 -34587376 - L1MB3 LINE L1 -104 6079 5636 209 224 41 0 chr4 149701988 149702037 -34586625 - MER5B DNA MER1_type -124 54 4 1806 83 8 17 chr4 149702086 149702326 -34586336 + AluSg/x SINE Alu 69 306 -4 1857 157 0 38 chr4 149705641 149705954 -34582708 + AluJo SINE Alu 1 301 -11 868 244 157 13 chr4 149706680 149706839 -34581823 - L2 LINE L2 -4 3309 3174 1988 124 3 30 chr4 149706839 149707138 -34581524 - AluSx SINE Alu -21 291 1 868 244 157 13 chr4 149707138 149707465 -34581197 - L2 LINE L2 -139 3174 2728 1227 186 69 31 chr4 149707475 149707801 -34580861 + LTR40b LTR ERVL 6 334 -131 2190 286 16 16 chr4 149707803 149708439 -34580223 + HERVL40 LTR ERVL 2882 3517 -2013 784 313 38 11 chr4 149708441 149708812 -34579850 + MER89-int LTR ERV1 6118 6498 -303 * 1087 235 56 3 chr4 149708689 149709022 -34579640 + HERVL40 LTR ERVL 2783 5525 -5 674 250 48 5 chr4 149709026 149709214 -34579448 + LTR40a LTR ERVL 1 196 -323 1089 293 291 18 chr4 149709217 149710227 -34578435 - L2 LINE L2 -1069 2245 960 1665 167 13 43 chr4 149712395 149712695 -34575967 - AluJo SINE Alu -21 291 1 2037 116 14 0 chr4 149713233 149713517 -34575145 - AluSx SINE Alu -2 310 23 311 318 68 36 chr4 149713522 149713714 -34574948 - L1ME4a LINE L1 -175 5946 5749 1777 111 85 0 chr4 149713768 149714039 -34574623 - AluSx SINE Alu -18 294 1 226 200 147 0 chr4 149714099 149714174 -34574488 + MER106B DNA MER1_type 934 1019 -40 2211 99 6 16 chr4 149714750 149715064 -34573598 + AluSx SINE Alu 1 311 -1 260 158 40 79 chr4 149715065 149715141 -34573521 + L1ME3 LINE L1 5873 5945 -217 1805 188 100 14 chr4 149715380 149715801 -34572861 + L1MB3 LINE L1 5692 6148 -35 325 237 108 0 chr4 149717718 149717811 -34570851 + MIR SINE MIR 38 140 -122 490 182 61 28 chr4 149720594 149720737 -34567925 + MIR SINE MIR 18 165 -43 1567 159 4 8 chr4 149720816 149721073 -34567589 - AluJo SINE Alu -11 301 46 712 276 87 28 chr4 149721776 149721946 -34566716 + L1M1 LINE L1 5433 5592 -548 2534 118 39 14 chr4 149721946 149722301 -34566361 - THE1B LTR MaLR 0 364 1 712 276 87 28 chr4 149722301 149722508 -34566154 + L1M1 LINE L1 5592 5838 -302 186 208 62 0 chr4 149723511 149723559 -34565103 - L3 LINE CR1 -14 1563 1513 561 260 69 23 chr4 149724095 149724268 -34564394 - MIR SINE MIR -65 197 17 180 298 21 0 chr4 149724322 149724369 -34564293 + L2 LINE L2 2418 2465 -849 2555 259 88 22 chr4 149725442 149726511 -34562151 - HAL1b LINE L1 -17 1331 193 766 156 0 0 chr4 149727293 149727415 -34561247 + L1MB4 LINE L1 5689 5810 -361 409 81 32 0 chr4 149727423 149727485 -34561177 + L1MB2 LINE L1 6069 6132 -39 1923 158 17 33 chr4 149727492 149727853 -34560809 + L1MB4 LINE L1 5813 6167 -13 352 327 50 22 chr4 149727870 149728069 -34560593 + MIR3 SINE MIR 12 208 -54 2309 130 135 8 chr4 149729835 149730213 -34558449 + MSTA LTR MaLR 3 428 0 499 243 40 29 chr4 149730301 149730474 -34558188 + L1MA10 LINE L1 6159 6333 -1 1524 121 3 108 chr4 149731156 149731463 -34557199 - AluJb SINE Alu 0 312 38 21 0 0 0 chr4 149732228 149732249 -34556413 + AT_rich Low_complexity Low_complexity 1 21 0 1670 178 42 3 chr4 149733655 149733941 -34554721 + AluSg SINE Alu 1 297 -13 2103 129 7 7 chr4 149734307 149734616 -34554046 + AluSx SINE Alu 1 309 -3 1238 145 16 10 chr4 149737110 149737303 -34551359 - AluJb SINE Alu -106 206 13 27 56 0 0 chr4 149737388 149737424 -34551238 + AT_rich Low_complexity Low_complexity 1 36 0 2201 105 0 23 chr4 149737435 149737573 -34551089 + AluSq SINE Alu 1 141 -172 2465 64 7 0 chr4 149737573 149737870 -34550792 + AluY SINE Alu 1 299 -12 2201 105 0 23 chr4 149737870 149738035 -34550627 + AluSq SINE Alu 141 297 -16 966 163 0 0 chr4 149738037 149738184 -34550478 - FAM SINE Alu -38 147 1 222 328 0 0 chr4 149738185 149738249 -34550413 + L2 LINE L2 1873 1936 -1378 1009 231 11 0 chr4 149738755 149738941 -34549721 + MER58A DNA MER1_type 1 188 -36 478 278 214 7 chr4 149738974 149739273 -34549389 + L2 LINE L2 2616 2976 -338 185 314 0 0 chr4 149739443 149739494 -34549168 + L2 LINE L2 3259 3309 -4 2467 69 0 3 chr4 149740134 149740437 -34548225 + AluY SINE Alu 1 302 -9 222 315 0 11 chr4 149740775 149740864 -34547798 - MIR SINE MIR -111 151 64 1882 128 60 0 chr4 149741506 149741787 -34546875 + AluSx SINE Alu 1 298 -14 2322 176 45 17 chr4 149743140 149743700 -34544962 + L1MB3 LINE L1 5565 6173 -10 2411 97 0 0 chr4 149743763 149744073 -34544589 + AluSq SINE Alu 1 310 -3 1312 180 73 0 chr4 149744085 149744346 -34544316 + L1MA5 LINE L1 6021 6300 0 1952 168 3 3 chr4 149744533 149744837 -34543825 + AluJb SINE Alu 1 304 -8 230 0 0 32 chr4 149746360 149746391 -34542271 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 631 255 110 5 chr4 149746594 149746794 -34541868 - MIR SINE MIR -29 233 13 642 191 27 0 chr4 149748441 149748551 -34540111 + LTR25 LTR ERV1 1 113 -681 2249 96 6 29 chr4 149748551 149748865 -34539797 + AluSq SINE Alu 1 307 -6 760 188 8 0 chr4 149748868 149749001 -34539661 + LTR25 LTR ERV1 661 794 0 375 41 0 0 chr4 149749841 149749890 -34538772 + (CA)n Simple_repeat Simple_repeat 2 50 0 2512 61 0 3 chr4 149749959 149750256 -34538406 + AluY SINE Alu 1 296 -15 186 332 162 19 chr4 149751112 149751489 -34537173 - L2 LINE L2 0 3272 2842 1407 197 66 42 chr4 149751874 149752079 -34536583 - MLT1A1 LTR MaLR 0 365 147 2400 101 3 0 chr4 149752079 149752387 -34536275 - AluSx SINE Alu -3 309 1 1407 197 66 42 chr4 149752387 149752516 -34536146 - MLT1A1 LTR MaLR -218 147 23 472 160 0 13 chr4 149752628 149752703 -34535959 + AluS SINE Alu 2 75 -243 365 286 251 0 chr4 149752838 149753041 -34535621 + L2 LINE L2 2821 3074 -239 2144 117 3 0 chr4 149753049 149753352 -34535310 + AluSx SINE Alu 1 304 0 1181 22 0 0 chr4 149753543 149753680 -34534982 - L1PA5 LINE L1 -1 6153 6017 1087 104 7 0 chr4 149753925 149754069 -34534593 + AluSq/x SINE Alu 1 145 -167 1281 177 0 5 chr4 149754881 149755134 -34533528 + AluJo SINE Alu 87 338 0 252 100 0 0 chr4 149755389 149755429 -34533233 + (TG)n Simple_repeat Simple_repeat 1 40 0 2114 123 13 0 chr4 149755429 149755730 -34532932 + AluSx SINE Alu 2 306 -6 635 263 27 0 chr4 149755813 149755999 -34532663 + L2 LINE L2 2179 2369 -945 530 230 0 53 chr4 149756270 149756422 -34532240 - FRAM SINE Alu -5 171 28 459 235 91 48 chr4 149756621 149757024 -34531638 - LTR33A LTR ERVL -54 469 2 206 286 41 31 chr4 149757157 149757255 -34531407 - L2 LINE L2 -302 2970 2872 279 0 0 0 chr4 149759248 149759279 -34529383 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3889 141 58 1 chr4 149759798 149760453 -34528209 - L1MA6 LINE L1 -6 6294 5603 472 129 0 0 chr4 149760553 149760623 -34528039 + Alu SINE Alu 234 303 -9 258 32 0 0 chr4 149760769 149760800 -34527862 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 543 191 0 0 chr4 149760823 149760907 -34527755 - AluJ/FLAM SINE Alu -224 88 5 2230 43 0 14 chr4 149761245 149761523 -34527139 - L1PA5 LINE L1 0 6154 5881 622 184 16 0 chr4 149761561 149761686 -34526976 - MER53 DNA DNA 0 189 63 1969 118 0 7 chr4 149761812 149762091 -34526571 + AluSx SINE Alu 22 298 -14 557 121 12 0 chr4 149762091 149762174 -34526488 - Tigger3(Golem) DNA MER2_type -268 2761 2678 2174 115 0 16 chr4 149762174 149762488 -34526174 + AluSc SINE Alu 1 309 0 21 0 0 0 chr4 149762492 149762513 -34526149 + AT_rich Low_complexity Low_complexity 1 21 0 2316 57 7 17 chr4 149762513 149762810 -34525852 + AluY SINE Alu 1 294 -17 459 311 82 41 chr4 149763044 149763411 -34525251 + MLT1J LTR MaLR 20 401 -110 28 79 0 0 chr4 149763684 149763747 -34524915 + AT_rich Low_complexity Low_complexity 1 63 0 189 0 0 0 chr4 149763993 149764014 -34524648 + (A)n Simple_repeat Simple_repeat 1 21 0 370 324 36 22 chr4 149764116 149764255 -34524407 + MIR3 SINE MIR 7 147 -61 644 265 45 47 chr4 149764768 149765008 -34523654 - MIR SINE MIR -1 261 27 1680 172 14 14 chr4 149765058 149765348 -34523314 - AluJo SINE Alu -22 290 1 231 122 122 0 chr4 149765791 149765832 -34522830 - L2 LINE L2 -9 3263 3218 925 223 154 50 chr4 149767765 149768049 -34520613 - MLT1J LTR MaLR -2 509 256 1818 153 33 10 chr4 149768049 149768349 -34520313 - AluJb SINE Alu -5 307 1 925 223 154 50 chr4 149768349 149768525 -34520137 - MLT1J LTR MaLR -255 256 1 1178 137 10 29 chr4 149768933 149769138 -34519524 + AluSg/x SINE Alu 93 293 -17 385 246 186 72 chr4 149769141 149769220 -34519442 + L1M4 LINE L1 4007 4076 -2070 2381 79 10 0 chr4 149769220 149769523 -34519139 + AluY SINE Alu 1 306 -5 385 246 186 72 chr4 149769523 149769776 -34518886 + L1M4 LINE L1 4076 4377 -1769 1258 263 47 28 chr4 149769872 149770417 -34518245 - L2 LINE L2 -279 3034 2477 659 134 0 0 chr4 149770517 149770643 -34518019 + AluSg/x SINE Alu 185 310 0 23 33 0 0 chr4 149770751 149770781 -34517881 + AT_rich Low_complexity Low_complexity 1 30 0 760 165 0 16 chr4 149770785 149770912 -34517750 - FLAM_A SINE Alu -8 125 1 221 252 115 50 chr4 149770920 149771059 -34517603 - L2 LINE L2 -230 3042 2895 585 175 0 0 chr4 149772042 149772139 -34516523 - AluSg/x SINE Alu -10 300 204 334 311 37 42 chr4 149772240 149772430 -34516232 + L2 LINE L2 3125 3313 0 1397 109 5 15 chr4 149773352 149773575 -34515087 - AluSc SINE Alu 0 307 87 228 253 38 13 chr4 149773934 149774013 -34514649 + L1MC4a LINE L1 6098 6178 -1630 347 162 0 40 chr4 149774076 149774150 -34514512 + L1MC3 LINE L1 7705 7775 -10 2230 68 10 27 chr4 149774216 149774510 -34514152 - AluY SINE Alu -22 289 1 383 337 6 12 chr4 149774513 149774676 -34513986 - L3 LINE CR1 -310 1267 1106 748 177 99 39 chr4 149774715 149774896 -34513766 - MER20 DNA MER1_type -21 198 7 2355 93 3 10 chr4 149775877 149776190 -34512472 + AluSq SINE Alu 1 311 -2 217 342 17 8 chr4 149776779 149776896 -34511766 + L2 LINE L2 2704 2821 -493 1522 190 7 4 chr4 149777247 149777521 -34511141 - AluJb SINE Alu -20 292 18 2190 84 7 17 chr4 149777971 149778268 -34510394 + AluY SINE Alu 1 294 -17 333 123 6 40 chr4 149778323 149778393 -34510269 + FAM SINE Alu 126 179 0 589 249 71 106 chr4 149779496 149780182 -34508480 - L1MC5 LINE L1 -271 7690 7204 2411 109 3 0 chr4 149780182 149780494 -34508168 - AluSp SINE Alu 0 313 1 589 249 71 106 chr4 149780494 149780599 -34508063 - L1MC5 LINE L1 -757 7204 7097 1556 154 53 14 chr4 149781195 149781480 -34507182 - AluJo SINE Alu -16 296 1 24 53 0 0 chr4 149781870 149781908 -34506754 + AT_rich Low_complexity Low_complexity 1 38 0 189 0 0 0 chr4 149781908 149781929 -34506733 + (A)n Simple_repeat Simple_repeat 1 21 0 2211 114 7 0 chr4 149782056 149782355 -34506307 - AluSq SINE Alu -11 302 2 2280 86 0 49 chr4 149782810 149783135 -34505527 - AluSg SINE Alu -1 309 1 23 0 0 0 chr4 149783216 149783239 -34505423 + AT_rich Low_complexity Low_complexity 1 23 0 228 35 0 0 chr4 149783239 149783268 -34505394 + (TG)n Simple_repeat Simple_repeat 2 30 0 2077 119 0 0 chr4 149783275 149783552 -34505110 - AluSx SINE Alu -33 279 3 2403 73 0 0 chr4 149783762 149784148 -34504514 - AluY SINE Alu 0 387 2 920 221 47 25 chr4 149784447 149784567 -34504095 - MIR SINE MIR -21 241 125 2052 157 39 17 chr4 149784567 149784924 -34503738 - MLT1A1 LTR MaLR 0 365 1 920 221 47 25 chr4 149784924 149785038 -34503624 - MIR SINE MIR -137 125 2 2416 65 3 13 chr4 149785204 149785510 -34503152 - AluY SINE Alu -8 303 1 1699 134 0 8 chr4 149785516 149785769 -34502893 - AluSc SINE Alu 0 309 59 1403 57 0 0 chr4 149785874 149786032 -34502630 - AluY SINE Alu -153 158 1 281 250 60 60 chr4 149786278 149786394 -34502268 + MIR3 SINE MIR 89 204 -4 442 218 133 30 chr4 149786692 149786857 -34501805 + MIR SINE MIR 81 262 0 2077 109 0 0 chr4 149786876 149787151 -34501511 + AluSq SINE Alu 1 275 -38 348 164 0 0 chr4 149787153 149787220 -34501442 + GA-rich Low_complexity Low_complexity 4 70 0 448 153 59 0 chr4 149787595 149787680 -34500982 - MIR SINE MIR -150 112 23 261 0 0 0 chr4 149787728 149787757 -34500905 + (TG)n Simple_repeat Simple_repeat 1 29 0 24 0 0 0 chr4 149788942 149788966 -34499696 + AT_rich Low_complexity Low_complexity 1 24 0 5174 33 4 8 chr4 149789773 149790811 -34497851 - L1PA4 LINE L1 -300 5855 4821 458 63 0 0 chr4 149790811 149790874 -34497788 + L1PA4 LINE L1 4770 4832 -1314 251 253 53 27 chr4 149790967 149791042 -34497620 + LTR67 LTR ERVL 97 173 -384 * 531 253 130 63 chr4 149790984 149791392 -34497270 + MLT1L LTR MaLR 73 613 -2 2492 81 10 0 chr4 149791614 149791922 -34496740 - AluSx SINE Alu -1 311 1 328 304 101 0 chr4 149792063 149792201 -34496461 + L2 LINE L2 2068 2219 -1095 437 86 0 0 chr4 149792201 149792259 -34496403 + MSTB LTR MaLR 1 58 -368 22 56 0 0 chr4 149792689 149792725 -34495937 + AT_rich Low_complexity Low_complexity 1 36 0 2170 107 3 3 chr4 149793377 149793666 -34494996 + AluSc SINE Alu 1 289 -20 2259 214 146 36 chr4 149793932 149794666 -34493996 - Charlie2 DNA MER1_type 0 2862 2210 4167 122 16 0 chr4 149794666 149795282 -34493380 - L1PA13 LINE L1 -19 6144 5519 2259 214 146 36 chr4 149795282 149795376 -34493286 - Charlie2 DNA MER1_type -652 2210 2128 1732 175 0 29 chr4 149795376 149795690 -34492972 - AluJb SINE Alu -3 309 5 2259 214 146 36 chr4 149795690 149795763 -34492899 - Charlie2 DNA MER1_type -734 2128 1861 531 285 50 54 chr4 149795816 149796058 -34492604 - Charlie2 DNA MER1_type -2540 242 2 303 242 10 61 chr4 149796431 149796530 -34492132 - MER5B DNA MER1_type -82 96 3 1857 140 36 0 chr4 149796569 149796847 -34491815 - AluSx SINE Alu -24 288 1 1250 119 0 26 chr4 149796898 149797091 -34491571 - AluJb SINE Alu -2 310 123 1436 142 134 8 chr4 149797192 149797445 -34491217 + AluJb SINE Alu 24 308 -4 271 137 0 20 chr4 149797585 149797636 -34491026 + L2 LINE L2 3214 3263 -9 1099 267 106 20 chr4 149798716 149799120 -34489542 + LTR16A LTR ERVL 7 445 -5 2327 109 3 3 chr4 149799241 149799552 -34489110 - AluSx SINE Alu 0 312 2 641 279 97 49 chr4 149799584 149800005 -34488657 - HAL1b LINE L1 -698 1634 245 1156 185 8 64 chr4 149800368 149800549 -34488113 + MLT1B LTR MaLR 1 164 -226 2338 113 0 3 chr4 149800549 149800860 -34487802 + AluSg SINE Alu 1 310 0 1156 185 8 64 chr4 149800860 149800943 -34487719 + MLT1B LTR MaLR 164 250 -140 2234 98 6 25 chr4 149801367 149801685 -34486977 + AluSx SINE Alu 1 312 0 2435 54 3 7 chr4 149801687 149801984 -34486678 + AluY SINE Alu 1 296 -15 243 260 0 0 chr4 149802265 149802315 -34486347 - MIR SINE MIR -150 112 63 2432 49 0 11 chr4 149802942 149803256 -34485406 - AluY SINE Alu 0 311 1 2013 106 36 0 chr4 149803318 149803592 -34485070 - AluSp SINE Alu -29 284 1 247 319 52 0 chr4 149803752 149803868 -34484794 + MIR SINE MIR 86 207 -55 524 176 0 0 chr4 149803915 149804027 -34484635 - AluJb SINE Alu 0 310 199 501 251 88 137 chr4 149804039 149804213 -34484449 - L2 LINE L2 -529 2785 2604 2209 125 0 3 chr4 149804213 149804516 -34484146 - AluSx SINE Alu -10 302 1 501 251 88 137 chr4 149804516 149804655 -34484007 - L2 LINE L2 -710 2604 2460 2426 88 0 3 chr4 149804655 149804962 -34483700 - AluSg SINE Alu -4 306 1 501 251 88 137 chr4 149804962 149804997 -34483665 - L2 LINE L2 -854 2460 2425 777 146 8 8 chr4 149804997 149805120 -34483542 - FLAM_A SINE Alu -10 123 1 501 251 88 137 chr4 149805120 149805258 -34483404 - L2 LINE L2 -889 2425 2321 1347 157 129 11 chr4 149805420 149805706 -34482956 - MSTB LTR MaLR 0 426 107 1405 128 29 25 chr4 149805817 149806060 -34482602 + MSTA LTR MaLR 185 428 0 591 293 92 4 chr4 149806135 149806374 -34482288 - MIR SINE MIR 0 262 3 2367 101 0 7 chr4 149806562 149806870 -34481792 + AluSc SINE Alu 1 306 -3 253 257 219 0 chr4 149806870 149806975 -34481687 + MER5A DNA MER1_type 62 189 0 2464 87 0 0 chr4 149807079 149807377 -34481285 + AluSq SINE Alu 1 298 -15 1839 154 7 10 chr4 149807385 149807683 -34480979 + AluJb SINE Alu 7 303 -9 3057 143 63 11 chr4 149807684 149807892 -34480770 - Tigger3b DNA MER2_type -2475 553 357 221 0 0 33 chr4 149807892 149807922 -34480740 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2194 103 7 0 chr4 149807924 149808206 -34480456 - AluSx SINE Alu -28 284 1 3057 143 63 11 chr4 149808206 149808520 -34480142 - Tigger3b DNA MER2_type -2671 357 1 1364 238 54 0 chr4 149809254 149809603 -34479059 + MER63B DNA MER1_type 1 368 -68 655 181 0 67 chr4 149809716 149809749 -34478913 + FLAM_A SINE Alu 1 35 -276 2726 82 11 13 chr4 149809749 149810125 -34478537 - THE1C LTR MaLR 0 375 1 655 181 0 67 chr4 149810125 149810240 -34478422 + FLAM_A SINE Alu 35 139 -172 1819 155 7 3 chr4 149810753 149811044 -34477618 + AluJo SINE Alu 7 298 -14 2138 110 21 0 chr4 149811420 149811711 -34476951 + AluSx SINE Alu 1 297 -15 563 221 233 6 chr4 149811807 149811979 -34476683 + MER58C DNA MER1_type 5 215 0 455 323 44 22 chr4 149811979 149812205 -34476457 + Charlie8 DNA MER1_type 2 232 -2185 244 77 128 0 chr4 149812348 149812387 -34476275 + MER49 LTR ERV1 847 890 -33 412 323 42 21 chr4 149812398 149812732 -34475930 - L1M4 LINE L1 -1526 4620 4280 1924 124 0 8 chr4 149813642 149813909 -34474753 + AluJo SINE Alu 11 275 -37 2448 70 3 19 chr4 149814297 149814612 -34474050 + AluY SINE Alu 2 311 0 344 264 11 0 chr4 149815012 149815099 -34473563 - MIR SINE MIR -127 135 48 252 272 109 11 chr4 149815249 149815341 -34473321 + MIR SINE MIR 98 198 -64 2082 122 3 7 chr4 149815952 149816255 -34472407 - AluSp SINE Alu -11 302 1 1508 173 4 29 chr4 149816710 149816982 -34471680 + AluJo SINE Alu 1 265 -47 2572 61 0 0 chr4 149817314 149817610 -34471052 + AluY SINE Alu 1 296 -15 227 283 17 0 chr4 149817703 149817763 -34470899 + MIR3 SINE MIR 116 176 -32 268 156 22 0 chr4 149819731 149819776 -34468886 - MLT2A2 LTR ERVL 0 453 408 209 136 0 23 chr4 149819778 149819822 -34468840 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 189 0 0 0 chr4 149819822 149819843 -34468819 + (TCCC)n Simple_repeat Simple_repeat 4 24 0 3032 59 32 34 chr4 149819849 149820258 -34468404 - MLT2A2 LTR ERVL -45 408 1 4259 92 4 0 chr4 149820388 149820940 -34467722 - MER41A LTR ERV1 0 554 1 433 259 182 29 chr4 149822006 149822176 -34466486 - MLT1J LTR MaLR -315 196 1 225 0 0 0 chr4 149822594 149822619 -34466043 + (T)n Simple_repeat Simple_repeat 1 25 0 2435 80 3 3 chr4 149822930 149823243 -34465419 + AluSp SINE Alu 1 313 0 201 277 36 36 chr4 149823472 149823555 -34465107 + L2 LINE L2 3001 3083 -189 201 273 50 20 chr4 149824658 149824757 -34463905 - L2 LINE L2 -981 2333 2232 420 227 127 9 chr4 149824768 149824878 -34463784 - LTR67 LTR ERVL -24 533 411 305 293 102 49 chr4 149825004 149825209 -34463453 - LTR67 LTR ERVL -337 220 5 1029 248 198 62 chr4 149825986 149826797 -34461865 + L2 LINE L2 2046 3036 -277 2324 88 0 7 chr4 149826797 149827103 -34461559 + AluSc SINE Alu 1 304 -5 1029 248 198 62 chr4 149827103 149827355 -34461307 + L2 LINE L2 3036 3252 -61 2298 99 7 3 chr4 149828245 149828548 -34460114 + AluSp SINE Alu 1 304 -9 321 310 39 8 chr4 149828567 149828696 -34459966 + MLT1K LTR MaLR 454 586 -2 708 193 0 14 chr4 149828931 149829071 -34459591 + L1MB8 LINE L1 6032 6169 -9 21 0 0 0 chr4 149829071 149829092 -34459570 + AT_rich Low_complexity Low_complexity 1 21 0 273 311 19 28 chr4 149830254 149830360 -34458302 + MER5A DNA MER1_type 64 168 -21 290 267 53 15 chr4 149830540 149830671 -34457991 - LTR67 LTR ERVL -43 514 379 21 0 0 0 chr4 149831866 149831887 -34456775 + AT_rich Low_complexity Low_complexity 1 21 0 1810 140 4 14 chr4 149833958 149834237 -34454425 + AluSx SINE Alu 5 280 -32 1305 180 24 69 chr4 149834477 149834766 -34453896 + AluJo SINE Alu 25 300 -12 1617 175 34 7 chr4 149834768 149835065 -34453597 + AluJb SINE Alu 2 306 -6 2335 88 3 7 chr4 149835787 149836094 -34452568 - AluY SINE Alu -5 306 1 2234 121 0 0 chr4 149836992 149837282 -34451380 + AluSg SINE Alu 1 290 -20 1625 199 57 37 chr4 149837639 149838097 -34450565 + MLT1C LTR MaLR 1 467 0 180 0 0 0 chr4 149839029 149839049 -34449613 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 243 0 0 0 chr4 149839048 149839075 -34449587 + (CA)n Simple_repeat Simple_repeat 1 27 0 964 172 27 11 chr4 149839620 149839806 -34448856 - MER5A DNA MER1_type 0 189 1 616 284 75 11 chr4 149840093 149840361 -34448301 + MLT1L LTR MaLR 323 607 -8 412 248 99 42 chr4 149840724 149840931 -34447731 + MIR SINE MIR 2 212 -50 218 205 0 0 chr4 149841653 149841692 -34446970 + (TG)n Simple_repeat Simple_repeat 2 40 0 385 320 84 98 chr4 149841697 149842078 -34446584 + L3 LINE CR1 758 1124 -453 1796 139 0 43 chr4 149842078 149842381 -34446281 + AluJo SINE Alu 5 294 -18 385 320 84 98 chr4 149842381 149842740 -34445922 + L3 LINE CR1 1124 1487 -90 2385 88 3 0 chr4 149842756 149843051 -34445611 + AluSc SINE Alu 1 296 -13 213 39 0 0 chr4 149844576 149844602 -34444060 + (T)n Simple_repeat Simple_repeat 1 26 0 411 258 66 60 chr4 149845053 149845235 -34443427 - MLT1L LTR MaLR -10 605 423 1957 156 0 3 chr4 149845319 149845620 -34443042 + AluJb SINE Alu 1 300 -12 1627 166 38 14 chr4 149845629 149845918 -34442744 + AluJb SINE Alu 1 296 -16 4260 91 72 31 chr4 149846562 149847144 -34441518 + MER4A LTR ERV1 1 613 -51 2148 106 3 16 chr4 149847144 149847447 -34441215 - AluSx SINE Alu -13 299 1 4260 91 72 31 chr4 149847447 149847500 -34441162 + MER4A LTR ERV1 613 662 -2 257 250 138 17 chr4 149848122 149848238 -34440424 - L1ME LINE L1 -364 5757 5628 411 241 240 14 chr4 149848303 149848473 -34440189 - MIR SINE MIR -56 206 9 667 239 86 25 chr4 149848606 149848803 -34439859 - MIR SINE MIR -20 242 34 2184 105 7 3 chr4 149848807 149849102 -34439560 - AluSg SINE Alu -14 296 1 2511 73 0 0 chr4 149849113 149849416 -34439246 - AluY SINE Alu -8 303 1 1588 105 35 4 chr4 149849761 149849989 -34438673 + AluSg SINE Alu 59 293 -17 350 336 44 15 chr4 149850572 149850709 -34437953 - MIR3 SINE MIR -26 182 42 180 0 0 0 chr4 149851182 149851202 -34437460 + (A)n Simple_repeat Simple_repeat 1 20 0 281 279 52 44 chr4 149852609 149852745 -34435917 - L2 LINE L2 0 3272 3136 1921 182 8 19 chr4 149853457 149853831 -34434831 + L1MB3 LINE L1 5814 6183 0 1631 134 7 64 chr4 149854865 149855163 -34433499 - AluJo SINE Alu -30 282 2 195 221 19 125 chr4 149855426 149855530 -34433132 + L2 LINE L2 3156 3248 -24 257 83 0 28 chr4 149857788 149857824 -34430838 - MER69 DNA AcHobo -3 2523 2489 439 229 10 0 chr4 149857871 149857967 -34430695 - MER69 DNA AcHobo -2382 144 48 661 255 91 64 chr4 149858122 149858209 -34430453 + L1ME4a LINE L1 5393 5476 -645 2284 103 0 3 chr4 149858209 149858519 -34430143 + AluSg SINE Alu 1 309 -1 661 255 91 64 chr4 149858519 149858804 -34429858 + L1ME4a LINE L1 5476 5775 -346 1663 175 0 0 chr4 149858804 149859067 -34429595 + AluJb SINE Alu 1 263 -49 661 255 91 64 chr4 149859067 149859198 -34429464 + L1ME4a LINE L1 5775 5901 -220 22 0 0 0 chr4 149859209 149859231 -34429431 + AT_rich Low_complexity Low_complexity 1 22 0 3961 145 45 80 chr4 149859245 149859304 -34429358 + L1MB7 LINE L1 5282 5341 -843 673 188 120 0 chr4 149859304 149859421 -34429241 + FLAM_C SINE Alu 2 132 -1 3961 145 45 80 chr4 149859421 149860222 -34428440 + L1MB7 LINE L1 5341 6110 -74 2118 112 7 3 chr4 149860222 149860526 -34428136 + AluSx SINE Alu 1 305 -7 3961 145 45 80 chr4 149860526 149860594 -34428068 + L1MB7 LINE L1 6110 6179 -5 404 243 90 79 chr4 149860655 149860844 -34427818 + MIR SINE MIR 71 261 -1 426 314 81 6 chr4 149861078 149861250 -34427412 - MIR SINE MIR -55 207 23 207 0 0 0 chr4 149862051 149862074 -34426588 + (T)n Simple_repeat Simple_repeat 1 23 0 2372 85 3 3 chr4 149862283 149862578 -34426084 - AluSq SINE Alu -18 295 1 182 288 123 0 chr4 149862589 149862662 -34426000 - L2 LINE L2 0 3313 3232 1680 141 42 59 chr4 149862940 149863246 -34425416 + AluJb SINE Alu 3 303 -9 249 333 29 58 chr4 149863448 149863622 -34425040 + L3b LINE CR1 1102 1270 -313 754 161 0 46 chr4 149863683 149863813 -34424849 - AluJb SINE Alu -187 125 2 379 156 26 13 chr4 149863980 149864057 -34424605 + L1MB3 LINE L1 6096 6173 -10 2236 103 3 0 chr4 149864373 149864664 -34423998 - AluSp SINE Alu -21 292 1 2235 45 39 62 chr4 149864764 149865073 -34423589 - AluY SINE Alu -9 302 1 22 56 0 0 chr4 149865315 149865351 -34423311 + AT_rich Low_complexity Low_complexity 1 36 0 1862 149 3 23 chr4 149865355 149865664 -34422998 + AluJo SINE Alu 3 305 -7 2037 158 0 0 chr4 149865990 149866300 -34422362 + AluSx SINE Alu 1 310 -2 759 146 0 0 chr4 149866551 149866691 -34421971 + AluSg/x SINE Alu 187 326 0 963 188 6 0 chr4 149867095 149867260 -34421402 + FAM SINE Alu 2 167 -8 2401 83 0 0 chr4 149867262 149867563 -34421099 + AluSx SINE Alu 1 301 -11 786 229 38 0 chr4 149867666 149867823 -34420839 + FRAM SINE Alu 1 163 -3 2404 67 0 13 chr4 149867948 149868248 -34420414 + AluY SINE Alu 1 296 -15 2335 95 0 0 chr4 149868332 149868627 -34420035 + AluSg SINE Alu 1 295 -15 211 385 18 18 chr4 149868754 149868863 -34419799 - MIR3 SINE MIR -54 154 46 835 149 83 0 chr4 149869224 149869392 -34419270 + L1MA8 LINE L1 6105 6286 -5 1782 171 0 29 chr4 149869725 149870040 -34418622 + AluJo SINE Alu 1 306 -6 192 40 0 0 chr4 149871260 149871285 -34417377 + (TC)n Simple_repeat Simple_repeat 2 26 0 1641 171 75 4 chr4 149871285 149871565 -34417097 - AluJo SINE Alu -9 303 4 1614 124 54 4 chr4 149871580 149871822 -34416840 - AluSx SINE Alu -19 293 40 2429 81 3 0 chr4 149872220 149872516 -34416146 + AluY SINE Alu 1 297 -14 2371 99 0 0 chr4 149874601 149874895 -34413767 + AluSg SINE Alu 1 294 -16 186 268 175 10 chr4 149875061 149875158 -34413504 + L2 LINE L2 3198 3310 -3 3184 166 86 17 chr4 149875233 149876321 -34412341 + L1MB7 LINE L1 4802 5966 -212 772 128 19 83 chr4 149876327 149876483 -34412179 + L1MB7 LINE L1 6039 6184 0 306 311 128 57 chr4 149876909 149877314 -34411348 - L2 LINE L2 -341 2973 2540 21 0 0 0 chr4 149877639 149877660 -34411002 + AT_rich Low_complexity Low_complexity 1 21 0 192 218 36 0 chr4 149877778 149877833 -34410829 + L2 LINE L2 3215 3271 -1 396 323 55 43 chr4 149878162 149878419 -34410243 + L1MB8 LINE L1 5560 5819 -302 1582 136 110 4 chr4 149878866 149879139 -34409523 + AluJb SINE Alu 1 302 -10 249 208 19 19 chr4 149883935 149883988 -34404674 - MER2 DNA MER2_type -25 320 268 963 128 133 43 chr4 149884022 149884082 -34404580 - MER2 DNA MER2_type -140 205 152 2016 156 0 10 chr4 149884082 149884389 -34404273 - AluJo SINE Alu -8 304 1 963 128 133 43 chr4 149884389 149884516 -34404146 - MER2 DNA MER2_type -193 152 1 1889 146 0 14 chr4 149884717 149885011 -34403651 - AluSx SINE Alu -22 290 1 1858 162 7 3 chr4 149885356 149885653 -34403009 + AluSx SINE Alu 1 298 -14 2384 72 0 7 chr4 149886386 149886690 -34401972 + AluY SINE Alu 1 302 -9 2112 110 3 0 chr4 149887559 149887841 -34400821 + AluSc SINE Alu 2 284 -25 1861 155 0 7 chr4 149887864 149888174 -34400488 + AluJb SINE Alu 1 308 -4 24 32 0 0 chr4 149888997 149889028 -34399634 + AT_rich Low_complexity Low_complexity 1 31 0 2036 109 26 10 chr4 149889157 149889331 -34399331 - AluSx SINE Alu -3 309 126 2395 48 0 10 chr4 149889331 149889644 -34399018 - AluY SINE Alu 0 311 1 2036 109 26 10 chr4 149889644 149889773 -34398889 - AluSx SINE Alu -186 126 1 22 35 0 0 chr4 149890849 149890878 -34397784 + AT_rich Low_complexity Low_complexity 1 29 0 429 117 320 0 chr4 149890955 149891058 -34397604 + L1MC3 LINE L1 6961 7096 -689 1087 207 14 0 chr4 149891093 149891315 -34397347 + L1MC3 LINE L1 7559 7783 -2 746 194 43 32 chr4 149891718 149891904 -34396758 + L1MB8 LINE L1 5991 6178 0 274 259 47 0 chr4 149891924 149892009 -34396653 - MER112 DNA MER1_type -92 168 80 21 0 0 0 chr4 149892087 149892108 -34396554 + AT_rich Low_complexity Low_complexity 1 21 0 264 281 137 53 chr4 149892325 149892684 -34395978 + L2 LINE L2 2216 2604 -710 870 204 123 66 chr4 149892715 149892981 -34395681 - Charlie2 DNA MER1_type -71 2791 2542 2317 88 20 0 chr4 149892981 149893286 -34395376 - AluY SINE Alu 0 311 1 870 204 123 66 chr4 149893286 149893443 -34395219 - Charlie2 DNA MER1_type -320 2542 2340 2170 128 0 0 chr4 149893443 149893739 -34394923 + AluSx SINE Alu 1 296 -16 870 204 123 66 chr4 149893739 149893754 -34394908 - Charlie2 DNA MER1_type -522 2340 2327 2035 124 54 6 chr4 149893771 149894086 -34394576 + MER2 DNA MER2_type 16 345 0 1574 216 92 16 chr4 149894086 149894530 -34394132 - Charlie2 DNA MER1_type -527 2335 1858 593 250 223 15 chr4 149894536 149894796 -34393866 - Charlie2 DNA MER1_type -2459 323 10 1900 126 0 11 chr4 149894846 149895108 -34393554 + AluSx SINE Alu 1 259 -53 417 265 68 12 chr4 149895206 149895368 -34393294 + L2 LINE L2 2876 3046 -267 217 318 30 0 chr4 149895479 149895545 -34393117 + L2 LINE L2 3228 3295 -18 2139 132 0 0 chr4 149895887 149896190 -34392472 - AluSg SINE Alu -7 303 1 456 268 82 50 chr4 149896911 149897225 -34391437 + L2 LINE L2 2925 3293 -20 375 259 226 5 chr4 149897405 149897617 -34391045 + MIR SINE MIR 1 259 -3 2289 113 0 3 chr4 149898416 149898727 -34389935 + AluSg SINE Alu 1 310 0 294 293 143 0 chr4 149899435 149899575 -34389087 - MIR SINE MIR -72 190 31 2131 109 7 0 chr4 149899740 149900056 -34388606 - AluSp SINE Alu 0 318 1 234 0 0 0 chr4 149900361 149900387 -34388275 + (TG)n Simple_repeat Simple_repeat 2 27 0 1097 140 12 111 chr4 149900864 149901107 -34387555 + MER20 DNA MER1_type 1 219 0 21 0 0 0 chr4 149901119 149901140 -34387522 + AT_rich Low_complexity Low_complexity 1 21 0 284 216 62 10 chr4 149901165 149901262 -34387400 + L1ME4a LINE L1 6020 6121 0 300 92 0 46 chr4 149902378 149902443 -34386219 + (CCCCG)n Simple_repeat Simple_repeat 1 62 0 21 36 0 0 chr4 149902593 149902621 -34386041 + GC_rich Low_complexity Low_complexity 1 28 0 245 143 0 20 chr4 149903707 149903756 -34384906 + (CA)n Simple_repeat Simple_repeat 1 48 0 2432 68 0 14 chr4 149904092 149904387 -34384275 - AluY SINE Alu -20 291 1 1566 194 7 3 chr4 149904837 149905130 -34383532 + AluJb SINE Alu 18 311 -1 1871 145 9 35 chr4 149905343 149905661 -34383001 - AluJb SINE Alu -2 310 1 1593 97 162 15 chr4 149905911 149906170 -34382492 - AluSc SINE Alu 0 299 3 552 200 249 24 chr4 149906505 149906710 -34381952 + MIR SINE MIR 2 252 -10 30 0 0 0 chr4 149906792 149906822 -34381840 + AT_rich Low_complexity Low_complexity 1 30 0 436 274 42 32 chr4 149907574 149907764 -34380898 - MIR SINE MIR 0 262 71 763 181 0 15 chr4 149907872 149908005 -34380657 - FLAM_A SINE Alu -1 132 2 763 241 35 5 chr4 149908089 149908292 -34380370 - MER3 DNA MER1_type 0 209 1 25 90 0 0 chr4 149908709 149908776 -34379886 + AT_rich Low_complexity Low_complexity 1 67 0 1742 181 7 10 chr4 149909518 149909816 -34378846 + AluJb SINE Alu 2 298 -14 22 35 0 0 chr4 149910223 149910252 -34378410 + AT_rich Low_complexity Low_complexity 1 29 0 224 143 0 24 chr4 149910491 149910533 -34378129 + MER91B DNA MER1_type 24 64 -126 1713 170 9 31 chr4 149911873 149912191 -34376471 - AluJo SINE Alu -1 311 1 1474 165 7 86 chr4 149912391 149912694 -34375968 + AluJo SINE Alu 4 282 -30 1446 198 91 13 chr4 149912707 149913091 -34375571 + L1MEc LINE L1 1197 1610 -5215 866 145 0 22 chr4 149913103 149913241 -34375421 + AluJo SINE Alu 1 135 -177 398 242 33 83 chr4 149913243 149913446 -34375216 + L1MEc LINE L1 1466 1792 -4885 1618 147 15 0 chr4 149913892 149914151 -34374511 + AluSx SINE Alu 37 299 -13 3303 232 84 39 chr4 149914340 149914853 -34373809 + L1M4 LINE L1 5 494 -6048 1477 204 64 0 chr4 149914853 149915133 -34373529 + AluJo SINE Alu 1 298 -14 3303 232 84 39 chr4 149915133 149915597 -34373065 + L1M4 LINE L1 494 1026 -5516 928 115 0 31 chr4 149915597 149915727 -34372935 - AluSg/x SINE Alu -29 281 156 27 0 0 0 chr4 149915731 149915758 -34372904 + AT_rich Low_complexity Low_complexity 1 27 0 1235 164 56 0 chr4 149915759 149915954 -34372708 - AluJb SINE Alu -20 292 87 736 180 102 18 chr4 149915955 149916151 -34372511 + L1M4 LINE L1 1028 1217 -5325 2279 94 3 35 chr4 149916155 149916473 -34372189 - AluSc SINE Alu -1 308 1 2091 100 31 14 chr4 149916473 149916762 -34371900 - AluSq SINE Alu -19 294 1 1064 165 0 44 chr4 149916836 149917018 -34371644 - AluJo SINE Alu -138 174 1 3546 175 58 23 chr4 149917018 149917275 -34371387 + L1ME LINE L1 4531 4778 -1388 2189 75 11 0 chr4 149917275 149917540 -34371122 + AluY SINE Alu 35 302 -9 3546 175 58 23 chr4 149917540 149917794 -34370868 + L1ME LINE L1 4778 5022 -1144 2282 83 14 0 chr4 149917794 149918083 -34370579 - AluY SINE Alu -18 293 1 3546 175 58 23 chr4 149918083 149918223 -34370439 + L1ME LINE L1 5022 5156 -1010 2307 103 13 0 chr4 149918223 149918525 -34370137 + AluSx SINE Alu 1 306 -6 3546 175 58 23 chr4 149918525 149918766 -34369896 + L1ME LINE L1 5156 5454 -712 405 94 0 0 chr4 149918767 149918820 -34369842 - THE1B LTR MaLR -2 362 310 207 0 0 0 chr4 149918967 149918990 -34369672 + (T)n Simple_repeat Simple_repeat 1 23 0 2437 84 0 3 chr4 149919199 149919495 -34369167 - AluSq SINE Alu -18 295 1 1753 131 42 59 chr4 149919857 149920163 -34368499 + AluJb SINE Alu 3 303 -9 213 333 29 58 chr4 149920365 149920539 -34368123 + L3b LINE CR1 1102 1270 -313 704 161 0 46 chr4 149920600 149920730 -34367932 - AluJb SINE Alu -187 125 2 330 169 26 13 chr4 149920897 149920974 -34367688 + L1MB3 LINE L1 6096 6173 -10 2261 103 3 0 chr4 149921290 149921581 -34367081 - AluSp SINE Alu -21 292 1 2294 42 39 62 chr4 149921681 149921990 -34366672 - AluY SINE Alu -9 302 1 22 56 0 0 chr4 149922232 149922268 -34366394 + AT_rich Low_complexity Low_complexity 1 36 0 1871 149 3 23 chr4 149922272 149922581 -34366081 + AluJo SINE Alu 3 305 -7 2055 158 0 0 chr4 149922907 149923217 -34365445 + AluSx SINE Alu 1 310 -2 715 146 0 0 chr4 149923468 149923608 -34365054 + AluSg/x SINE Alu 187 326 0 908 188 6 0 chr4 149924012 149924177 -34364485 + FAM SINE Alu 2 167 -8 2379 83 7 0 chr4 149924179 149924504 -34364158 + AluSq SINE Alu 1 327 0 2294 72 0 41 chr4 149924616 149924934 -34363728 - AluSg SINE Alu -5 305 1 2038 90 78 3 chr4 149925027 149925372 -34363290 + L1MB3 LINE L1 5804 6174 -9 785 175 0 0 chr4 149926201 149926327 -34362335 - FLAM_A SINE Alu -1 141 16 1446 181 33 43 chr4 149926745 149927048 -34361614 + AluJo SINE Alu 12 311 -1 1798 150 7 4 chr4 149927056 149927330 -34361332 + AluSx SINE Alu 27 301 -11 1458 164 0 17 chr4 149927577 149927809 -34360853 - AluJb SINE Alu -84 228 1 2139 110 0 4 chr4 149927820 149928122 -34360540 - AluSc SINE Alu 0 303 3 201 39 0 0 chr4 149928124 149928150 -34360512 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1968 151 3 3 chr4 149928150 149928441 -34360221 - AluSx SINE Alu -21 291 1 282 157 59 0 chr4 149929051 149929102 -34359560 - L1MA7 LINE L1 -7 6284 6231 2367 85 14 0 chr4 149929638 149929933 -34358729 + AluSp SINE Alu 1 299 -14 285 274 76 97 chr4 149931254 149931394 -34357268 - MIR SINE MIR -5 257 126 2236 120 0 7 chr4 149931394 149931695 -34356967 + AluJb SINE Alu 1 299 -13 285 274 76 97 chr4 149931695 149931806 -34356856 - MIR SINE MIR -136 126 14 210 262 60 24 chr4 149931904 149931988 -34356674 - L2 LINE L2 0 3272 3186 186 306 0 16 chr4 149932097 149932159 -34356503 - L2 LINE L2 -208 3064 3004 475 100 0 0 chr4 149932274 149932334 -34356328 + AluJ/FRAM SINE Alu 232 291 -21 1329 131 42 0 chr4 149932483 149932674 -34355988 - AluJb SINE Alu -113 199 1 1873 167 0 10 chr4 149933304 149933604 -34355058 - AluJb SINE Alu -15 297 1 2550 70 0 0 chr4 149933689 149933988 -34354674 - AluY SINE Alu -12 299 1 1648 178 37 10 chr4 149934002 149934300 -34354362 - AluJo SINE Alu 0 312 7 2438 94 0 0 chr4 149934330 149934639 -34354023 - AluSg SINE Alu -1 309 1 2094 131 14 0 chr4 149934687 149934984 -34353678 - AluSx SINE Alu -11 301 1 942 102 23 8 chr4 149935250 149935378 -34353284 - AluSq/x SINE Alu -182 130 1 1499 127 5 14 chr4 149935445 149935666 -34352996 + AluSg/x SINE Alu 87 305 -7 435 38 0 0 chr4 149935879 149935932 -34352730 + (CA)n Simple_repeat Simple_repeat 2 54 0 1563 187 66 7 chr4 149935968 149936257 -34352405 - AluJb SINE Alu -6 306 1 720 222 37 37 chr4 149936751 149936940 -34351722 - MER5A DNA MER1_type 0 189 1 2149 120 3 0 chr4 149937161 149937471 -34351191 + AluSx SINE Alu 1 311 0 2494 210 28 52 chr4 149937530 149938178 -34350484 + LTR27 LTR ERV1 3 634 -2 1958 146 17 7 chr4 149938319 149938613 -34350049 - AluJo SINE Alu -15 297 1 1549 172 61 27 chr4 149939047 149939343 -34349319 - AluJo SINE Alu -6 306 1 225 246 15 0 chr4 149939652 149939717 -34348945 + L1ME4a LINE L1 5960 6025 -96 1845 120 0 0 chr4 149940080 149940330 -34348332 - AluSg SINE Alu -5 305 56 1693 151 4 25 chr4 149940331 149940609 -34348053 - AluJo SINE Alu -38 274 3 206 118 0 0 chr4 149940620 149940654 -34348008 + (A)n Simple_repeat Simple_repeat 1 34 0 1041 182 26 0 chr4 149940661 149940853 -34347809 - L1MC1 LINE L1 -16 6317 6121 1979 178 0 0 chr4 149941076 149941385 -34347277 - AluJb SINE Alu -1 311 3 1743 144 3 78 chr4 149942228 149942562 -34346100 + AluJo SINE Alu 1 309 -3 267 136 0 0 chr4 149944648 149944707 -34343955 + (CA)n Simple_repeat Simple_repeat 2 60 0 336 24 0 0 chr4 149944707 149944748 -34343914 + (CAT)n Simple_repeat Simple_repeat 1 41 0 1851 177 0 3 chr4 149945122 149945422 -34343240 + AluSx SINE Alu 1 299 -13 2155 89 0 7 chr4 149947408 149947689 -34340973 + AluSx SINE Alu 1 279 -33 345 47 0 0 chr4 149947690 149947733 -34340929 + (CA)n Simple_repeat Simple_repeat 2 44 0 1492 127 4 4 chr4 149947996 149948233 -34340429 - MER83 LTR ERV1 0 448 212 2031 133 3 0 chr4 149948611 149948904 -34339758 - AluSq SINE Alu -18 295 2 1792 187 10 10 chr4 149949077 149949387 -34339275 - AluJo SINE Alu -2 310 1 389 233 69 86 chr4 149949405 149949637 -34339025 - MER57A LTR ERV1 -162 241 14 793 159 62 92 chr4 149949752 149949979 -34338683 + MER106A DNA MER1_type 17 236 0 469 210 20 0 chr4 149949986 149950086 -34338576 + MER94 DNA DNA 5 106 -28 620 193 44 1 chr4 149950361 149950572 -34338090 + MER45C DNA AcHobo 706 952 -1 419 226 124 15 chr4 149950574 149950711 -34337951 + L2 LINE L2 3158 3309 -4 279 333 70 23 chr4 149950727 149950856 -34337806 + L2 LINE L2 3126 3260 -12 669 168 8 24 chr4 149951195 149951320 -34337342 - FLAM_A SINE Alu -10 123 1 1614 131 17 48 chr4 149951471 149951762 -34336900 + AluJb SINE Alu 17 298 -14 22 0 0 0 chr4 149952027 149952049 -34336613 + AT_rich Low_complexity Low_complexity 1 22 0 302 230 0 14 chr4 149953647 149953721 -34334941 + MLT1I LTR MaLR 68 140 -269 24 32 0 0 chr4 149955181 149955212 -34333450 + AT_rich Low_complexity Low_complexity 1 31 0 2033 157 26 0 chr4 149955456 149955768 -34332894 + 7SLRNA srpRNA srpRNA 1 320 0 330 0 60 0 chr4 149955778 149955828 -34332834 + (TA)n Simple_repeat Simple_repeat 2 54 0 2408 75 0 0 chr4 149956273 149956566 -34332096 + AluY SINE Alu 1 293 -18 348 252 233 35 chr4 149956816 149957133 -34331529 + MLT1L LTR MaLR 3 382 -233 385 299 51 0 chr4 149957188 149957325 -34331337 + MLT1L LTR MaLR 466 609 -6 1290 211 44 0 chr4 149957451 149957595 -34331067 - AluJo SINE Alu -30 282 146 2486 91 0 0 chr4 149957595 149957902 -34330760 - AluSg SINE Alu -3 307 1 198 0 0 0 chr4 149957910 149957932 -34330730 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1290 211 44 0 chr4 149957932 149958048 -34330614 - AluJo SINE Alu -172 140 1 2411 89 0 6 chr4 149958152 149958465 -34330197 - AluY SINE Alu 0 311 1 364 222 121 0 chr4 149958927 149959026 -34329636 - MER103 DNA DNA -54 112 2 316 309 0 32 chr4 149959644 149959738 -34328924 - MIR SINE MIR -170 92 2 * 372 381 57 48 chr4 149959738 149960040 -34328622 + L2 LINE L2 2967 3271 -1 228 299 117 0 chr4 149960556 149960633 -34328029 - L2 LINE L2 -1 3271 3186 801 288 62 4 chr4 149961996 149962222 -34326440 + MIR SINE MIR 14 252 -10 221 297 69 76 chr4 149963088 149963233 -34325429 + L2 LINE L2 3169 3312 -1 385 314 133 13 chr4 149963284 149963510 -34325152 - MIR SINE MIR -8 254 2 584 242 60 52 chr4 149964248 149964609 -34324053 + L1MEc LINE L1 2179 2550 -3665 628 229 72 51 chr4 149964619 149964889 -34323773 + L1ME1 LINE L1 5764 6001 -165 580 221 0 19 chr4 149964893 149965051 -34323611 + L1MA10 LINE L1 6179 6333 -1 9251 119 54 22 chr4 149965137 149966653 -34322009 + Tigger1 DNA MER2_type 1 1574 -844 2049 131 3 0 chr4 149966653 149966936 -34321726 + AluSx SINE Alu 1 284 -28 9251 119 54 22 chr4 149966936 149967038 -34321624 + Tigger1 DNA MER2_type 1574 1671 -747 1297 148 34 0 chr4 149967151 149967387 -34321275 + Tigger1 DNA MER2_type 2175 2418 0 1199 239 47 115 chr4 149967387 149967946 -34320716 + MLT1E LTR MaLR 48 567 0 261 238 12 12 chr4 149968260 149968340 -34320322 - MLT1J LTR MaLR -332 179 100 4107 169 9 48 chr4 149968766 149969658 -34319004 + L1MB8 LINE L1 5322 6178 0 954 233 92 0 chr4 149969807 149970035 -34318627 + MIR SINE MIR 14 262 0 1174 247 100 19 chr4 149970229 149970414 -34318248 + L2 LINE L2 2255 2424 -890 930 211 86 82 chr4 149970414 149970879 -34317783 + MLT1C LTR MaLR 1 467 0 1174 247 100 19 chr4 149970879 149971013 -34317649 + L2 LINE L2 2424 2600 -714 974 146 12 24 chr4 149971016 149971181 -34317481 + FRAM SINE Alu 1 163 -3 28 0 0 0 chr4 149971218 149971246 -34317416 + AT_rich Low_complexity Low_complexity 1 28 0 241 277 46 0 chr4 149971246 149971311 -34317351 + L2 LINE L2 2587 2654 -660 * 299 221 26 78 chr4 149971309 149971386 -34317276 + L2 LINE L2 3230 3302 -11 323 256 13 90 chr4 149971466 149971622 -34317040 + LTR67 LTR ERVL 25 168 -389 926 118 13 0 chr4 149971758 149971911 -34316751 - L1MB3 LINE L1 -212 5971 5817 970 179 0 0 chr4 149971911 149972067 -34316595 + FRAM SINE Alu 8 163 -13 1792 138 63 12 chr4 149972068 149972247 -34316415 - L1MB3 LINE L1 -341 5830 5662 1502 201 3 7 chr4 149972247 149972535 -34316127 - AluJo SINE Alu -14 298 12 1792 138 63 12 chr4 149972535 149972688 -34315974 - L1MB3 LINE L1 -509 5662 5481 25 31 0 0 chr4 149972689 149972721 -34315941 + AT_rich Low_complexity Low_complexity 1 32 0 705 159 0 0 chr4 149972721 149972828 -34315834 - FLAM_C SINE Alu -36 107 1 286 161 36 0 chr4 149972828 149972884 -34315778 - L1MB3 LINE L1 -682 5489 5432 345 345 128 4 chr4 149972906 149973155 -34315507 + L2 LINE L2 2614 2893 -421 2290 113 0 0 chr4 149973268 149973568 -34315094 + AluSq SINE Alu 1 300 -13 414 246 69 73 chr4 149973992 149974163 -34314499 + L1MEd LINE L1 660 830 -5289 2347 117 92 2 chr4 149974163 149974556 -34314106 - MSTA LTR MaLR 0 428 1 414 246 69 73 chr4 149974556 149974875 -34313787 + L1MEd LINE L1 830 1148 -4971 2295 67 27 3 chr4 149974923 149975222 -34313440 - AluY SINE Alu -5 306 1 350 257 176 20 chr4 149975350 149975595 -34313067 + HAL1 LINE L1 1431 1713 -794 1645 148 33 7 chr4 149975648 149975919 -34312743 + AluJb SINE Alu 1 278 -34 331 272 0 22 chr4 149975948 149976040 -34312622 + L1MC4 LINE L1 6614 6703 -1339 212 215 0 11 chr4 149976080 149976173 -34312489 + (TA)n Simple_repeat Simple_repeat 2 93 0 222 37 0 0 chr4 149976173 149976200 -34312462 + (CA)n Simple_repeat Simple_repeat 2 28 0 5270 167 49 14 chr4 149976235 149976694 -34311968 + L1MC2 LINE L1 4927 5369 -975 2379 104 3 0 chr4 149976694 149977001 -34311661 + AluSq SINE Alu 1 308 -5 5270 167 49 14 chr4 149977001 149977910 -34310752 + L1MC2 LINE L1 5369 6334 -10 384 188 0 0 chr4 149978446 149978515 -34310147 + Tigger3(Golem) DNA MER2_type 2960 3028 -1 230 238 83 29 chr4 149978550 149978638 -34310024 + MIR SINE MIR 30 126 -107 1037 119 62 11 chr4 149979125 149979301 -34309361 + Tigger2a DNA MER2_type 2 186 -248 602 199 0 66 chr4 149979301 149979437 -34309225 + Tigger2a DNA MER2_type 318 444 0 1773 143 0 0 chr4 149979664 149979922 -34308740 + AluSq SINE Alu 7 264 -49 261 57 0 0 chr4 149979959 149979994 -34308668 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2372 73 17 10 chr4 149980204 149980505 -34308157 - AluY SINE Alu -8 303 1 540 151 142 38 chr4 149980642 149980748 -34307914 - FLAM_A SINE Alu -16 126 10 1050 160 28 0 chr4 149981198 149981410 -34307252 - L1MA4 LINE L1 -3 6297 6080 1929 160 3 7 chr4 149981605 149981898 -34306764 - AluJb SINE Alu -20 292 1 1311 203 43 50 chr4 149981979 149982303 -34306359 + AluJo SINE Alu 1 312 0 2006 126 34 0 chr4 149982759 149983053 -34305609 + AluSq SINE Alu 1 304 -9 359 197 63 49 chr4 149983139 149983281 -34305381 + L1M4 LINE L1 5137 5280 -866 396 0 0 0 chr4 149983330 149983374 -34305288 + (TA)n Simple_repeat Simple_repeat 2 45 0 301 264 82 9 chr4 149983375 149983485 -34305177 + L1MC4 LINE L1 7924 8041 -1 881 199 0 45 chr4 149984010 149984186 -34304476 - FRAM SINE Alu -8 168 1 672 228 85 21 chr4 149984193 149984382 -34304280 - MIR SINE MIR -10 252 52 246 193 0 0 chr4 149984921 149984978 -34303684 - L1ME LINE L1 -224 5897 5841 229 292 62 0 chr4 149986070 149986135 -34302527 + MIR SINE MIR 29 97 -165 830 125 16 0 chr4 149987970 149988098 -34300564 + FLAM_C SINE Alu 1 130 -3 602 293 155 35 chr4 149988298 149988905 -34299757 + L2 LINE L2 2183 2862 -452 286 292 97 18 chr4 149989008 149989121 -34299541 + L2 LINE L2 2946 3067 -205 598 238 41 7 chr4 149989622 149989769 -34298893 + MER5B DNA MER1_type 1 152 -26 534 252 0 17 chr4 149992221 149992336 -34296326 + L2 LINE L2 3184 3296 -17 219 139 0 0 chr4 149993155 149993191 -34295471 + (TA)n Simple_repeat Simple_repeat 1 36 0 766 244 12 0 chr4 149994579 149994747 -34293915 - FRAM SINE Alu -5 171 2 779 180 0 0 chr4 149994781 149994909 -34293753 + FLAM_C SINE Alu 2 129 -4 812 209 131 26 chr4 149995389 149995657 -34293005 + MER2 DNA MER2_type 49 344 -1 627 184 34 20 chr4 149995717 149995864 -34292798 - L1MD2 LINE L1 -10 6349 6201 6325 212 62 52 chr4 149995867 149996643 -34292019 - L1MD2 LINE L1 -214 6145 5379 2335 113 0 0 chr4 149996643 149996945 -34291717 - AluSq SINE Alu -11 302 1 6325 212 62 52 chr4 149996945 149997964 -34290698 - L1MD2 LINE L1 -980 5379 4372 1880 171 0 10 chr4 149997964 149998268 -34290394 - AluJo SINE Alu -11 301 1 6325 212 62 52 chr4 149998268 149999447 -34289215 - L1MD2 LINE L1 -1987 4372 3130 2115 124 0 10 chr4 149999447 149999754 -34288908 - AluSx SINE Alu -8 304 1 6325 212 62 52 chr4 149999754 150000010 -34288652 - L1MD2 LINE L1 -3229 3130 2878 1479 201 70 10 chr4 150000010 150000408 -34288254 - Charlie4a DNA MER1_type -69 439 18 2154 127 3 0 chr4 150002301 150002609 -34286053 - AluSx SINE Alu -3 309 1 318 302 20 27 chr4 150003426 150003575 -34285087 + MER117 DNA MER1_type 1 148 -49 422 217 45 25 chr4 150004272 150004429 -34284233 + MER113 DNA MER1_type? 58 217 -304 1172 106 0 0 chr4 150005658 150005844 -34282818 + AluJb SINE Alu 133 318 0 25 0 0 0 chr4 150006188 150006213 -34282449 + AT_rich Low_complexity Low_complexity 1 25 0 2076 119 0 11 chr4 150006865 150007180 -34281482 - AluSg SINE Alu 0 312 1 374 365 16 0 chr4 150007583 150007709 -34280953 + L2 LINE L2 3186 3313 0 318 338 38 8 chr4 150007979 150008112 -34280550 - L2 LINE L2 -8 3264 3128 2207 116 3 0 chr4 150008377 150008680 -34279982 + AluSx SINE Alu 2 305 -7 409 100 0 0 chr4 150008877 150008937 -34279725 - Charlie5 DNA MER1_type 0 2623 2564 2330 92 0 3 chr4 150009567 150009861 -34278801 - AluSq SINE Alu -20 293 1 227 318 85 50 chr4 150011038 150011239 -34277423 + L3 LINE CR1 186 393 -1184 1910 155 10 0 chr4 150011335 150011625 -34277037 - AluJo SINE Alu -17 295 3 2428 56 3 7 chr4 150011637 150011940 -34276722 - AluY SINE Alu -9 302 1 229 337 53 0 chr4 150012074 150012169 -34276493 + L3 LINE CR1 419 518 -1059 677 203 0 15 chr4 150014339 150014472 -34274190 - FLAM_A SINE Alu -1 141 11 2408 8 0 0 chr4 150014505 150014765 -34273897 - AluYa5 SINE Alu -6 305 46 2310 113 0 13 chr4 150015012 150015321 -34273341 + AluSx SINE Alu 1 305 -7 26 50 0 0 chr4 150015970 150016010 -34272652 + AT_rich Low_complexity Low_complexity 1 40 0 3557 19 0 0 chr4 150016156 150016583 -34272079 - L1PA3 LINE L1 -428 5727 5301 3907 18 2 0 chr4 150016583 150017062 -34271600 + L1PA3 LINE L1 5696 6183 0 833 152 8 0 chr4 150017089 150017221 -34271441 + FLAM_C SINE Alu 1 133 0 2080 125 34 14 chr4 150019021 150019318 -34269344 + AluSx SINE Alu 1 303 -9 203 321 0 0 chr4 150019390 150019443 -34269219 + L2 LINE L2 3215 3267 -5 336 221 145 39 chr4 150019528 150019680 -34268982 - MIR SINE MIR -51 211 37 427 287 10 0 chr4 150019831 150019932 -34268730 + L2 LINE L2 3136 3237 -35 21 0 0 0 chr4 150021489 150021510 -34267152 + AT_rich Low_complexity Low_complexity 1 21 0 423 209 12 0 chr4 150022123 150022209 -34266453 + MER63 DNA MER1_type 679 765 -297 451 331 6 0 chr4 150022358 150022527 -34266135 + L2 LINE L2 2147 2316 -998 985 184 70 0 chr4 150022594 150022795 -34265867 - MIR SINE MIR 0 262 48 2020 110 33 0 chr4 150022804 150023077 -34265585 - AluSg SINE Alu -14 296 15 1506 231 20 25 chr4 150023095 150023493 -34265169 + MSTD LTR MaLR 1 396 0 621 265 160 5 chr4 150023585 150023804 -34264858 - MIR SINE MIR -8 254 2 310 313 98 67 chr4 150023853 150024118 -34264544 + L2 LINE L2 2503 2758 -514 313 302 45 17 chr4 150024118 150024297 -34264365 - MER5A DNA MER1_type -3 186 3 310 313 98 67 chr4 150024297 150024535 -34264127 + L2 LINE L2 2758 3035 -237 2249 132 0 0 chr4 150024535 150024846 -34263816 + AluSx SINE Alu 1 311 -1 310 313 98 67 chr4 150024846 150024994 -34263668 + L2 LINE L2 3035 3177 -95 2201 110 0 29 chr4 150025457 150025767 -34262895 - AluSx SINE Alu -11 301 1 346 325 234 18 chr4 150026348 150026634 -34262028 + L2 LINE L2 2915 3262 -10 4519 136 36 49 chr4 150026741 150027621 -34261041 + L1MA8 LINE L1 4415 5305 -918 516 234 8 65 chr4 150027621 150027745 -34260917 + FLAM_A SINE Alu 1 117 -16 2222 119 0 0 chr4 150027745 150028040 -34260622 - AluSx SINE Alu -17 295 1 4519 136 36 49 chr4 150028040 150028149 -34260513 + L1MA8 LINE L1 5304 5391 -832 1832 116 68 0 chr4 150028149 150028399 -34260263 + AluSc SINE Alu 24 290 -19 4519 136 36 49 chr4 150028399 150028488 -34260174 + L1MA8 LINE L1 5391 5480 -743 677 200 100 0 chr4 150028489 150028619 -34260043 + AluJb SINE Alu 118 260 -52 434 139 0 14 chr4 150028624 150028696 -34259966 + AluJ/FRAM SINE Alu 227 297 -15 996 112 12 0 chr4 150028696 150028857 -34259805 + L1MA8 LINE L1 5488 5650 -641 2989 92 68 61 chr4 150028871 150029414 -34259248 - LTR10A LTR ERV1 -62 547 1 2532 113 29 106 chr4 150029414 150029910 -34258752 + L1MA8 LINE L1 5647 6097 -194 1802 174 0 16 chr4 150029910 150030214 -34258448 + AluJo SINE Alu 1 299 -13 2532 113 29 106 chr4 150030214 150030276 -34258386 + L1MA8 LINE L1 6097 6162 -129 1360 186 15 72 chr4 150030437 150030771 -34257891 + MLT1B LTR MaLR 76 390 0 233 240 0 0 chr4 150030804 150030854 -34257808 - MIR SINE MIR -27 235 186 237 33 0 0 chr4 150031029 150031059 -34257603 + (ATG)n Simple_repeat Simple_repeat 3 32 0 531 281 66 27 chr4 150031077 150031315 -34257347 - MIR SINE MIR -5 257 14 180 327 0 0 chr4 150031497 150031549 -34257113 - L2 LINE L2 -18 3254 3203 * 328 316 76 58 chr4 150031540 150031711 -34256951 - MIR SINE MIR -81 181 8 422 249 23 64 chr4 150031908 150032081 -34256581 - MER103 DNA DNA 0 166 1 485 124 40 186 chr4 150034982 150035159 -34253503 - MER20 DNA MER1_type -28 191 41 616 160 0 16 chr4 150036292 150036417 -34252245 - Charlie1b DNA MER1_type -2 521 399 902 147 7 0 chr4 150036418 150036554 -34252108 + AluJo SINE Alu 1 137 -175 1847 198 20 2 chr4 150036569 150036974 -34251688 - Charlie1b DNA MER1_type -110 413 2 714 284 10 40 chr4 150037021 150037222 -34251440 + MIR SINE MIR 52 246 -16 207 0 0 0 chr4 150037240 150037263 -34251399 + (ATG)n Simple_repeat Simple_repeat 3 25 0 376 154 51 0 chr4 150037432 150037510 -34251152 - L1ME3A LINE L1 -5 6165 6084 213 270 48 0 chr4 150037590 150037653 -34251009 + L2 LINE L2 3248 3313 0 1886 162 3 10 chr4 150038080 150038377 -34250285 + AluJo SINE Alu 1 295 -17 3237 231 52 57 chr4 150039588 150040556 -34248106 + L1MB7 LINE L1 835 1807 -5018 2301 104 3 0 chr4 150040556 150040854 -34247808 - AluSx SINE Alu -13 299 1 3237 231 52 57 chr4 150040854 150041731 -34246931 + L1MB7 LINE L1 1807 2804 -4021 1790 193 3 6 chr4 150041731 150042042 -34246620 + AluJo SINE Alu 3 312 0 3237 231 52 57 chr4 150042042 150042147 -34246515 + L1MB7 LINE L1 2804 2908 -3917 2861 231 41 11 chr4 150042285 150043228 -34245434 + L1MB7 LINE L1 3752 4765 -1879 258 81 0 0 chr4 150043228 150043265 -34245397 + (CA)n Simple_repeat Simple_repeat 2 38 0 2861 231 41 11 chr4 150043265 150043385 -34245277 + L1MB7 LINE L1 4765 4880 -1764 649 148 93 0 chr4 150043386 150043494 -34245168 + FLAM_C SINE Alu 1 118 -25 3441 173 56 60 chr4 150043499 150044505 -34244157 + L1MB7 LINE L1 4865 5874 -808 2141 120 0 16 chr4 150044505 150044822 -34243840 + AluSx SINE Alu 1 312 0 2209 112 7 0 chr4 150044830 150045126 -34243536 + AluSx SINE Alu 1 298 -14 3441 173 56 60 chr4 150045126 150045642 -34243020 + L1MB7 LINE L1 5881 6398 -284 1590 171 29 7 chr4 150045642 150045916 -34242746 + AluJo SINE Alu 1 280 -32 195 42 0 0 chr4 150045918 150045942 -34242720 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 3441 173 56 60 chr4 150045942 150046022 -34242640 + L1MB7 LINE L1 6399 6679 -3 22 35 0 0 chr4 150046481 150046510 -34242152 + AT_rich Low_complexity Low_complexity 1 29 0 207 69 0 0 chr4 150046561 150046590 -34242072 + (TA)n Simple_repeat Simple_repeat 1 29 0 23 0 0 0 chr4 150046593 150046616 -34242046 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr4 150047019 150047039 -34241623 + (TAA)n Simple_repeat Simple_repeat 1 20 0 400 318 135 0 chr4 150047040 150047232 -34241430 - MIR SINE MIR -8 254 37 201 286 66 44 chr4 150047237 150047328 -34241334 - MIR SINE MIR -100 108 16 22 0 0 0 chr4 150047334 150047356 -34241306 + AT_rich Low_complexity Low_complexity 1 22 0 475 220 131 18 chr4 150047675 150047843 -34240819 + MIR SINE MIR 56 242 -20 2261 99 7 0 chr4 150048357 150048651 -34240011 + AluSx SINE Alu 1 296 -16 1967 155 94 14 chr4 150049939 150050126 -34238536 - MLT1B LTR MaLR 0 390 219 2230 107 0 16 chr4 150050126 150050434 -34238228 - AluSx SINE Alu -9 303 1 1819 114 0 8 chr4 150050440 150050694 -34237968 - AluSc SINE Alu 0 309 58 1967 155 94 14 chr4 150050694 150050860 -34237802 - MLT1B LTR MaLR -175 215 1 1800 176 6 13 chr4 150051044 150051357 -34237305 + AluJb SINE Alu 1 311 -1 381 294 48 0 chr4 150051430 150051556 -34237106 - L1ME LINE L1 -359 5762 5631 2274 81 10 14 chr4 150051932 150052229 -34236433 - AluSq SINE Alu -17 296 1 1706 114 90 73 chr4 150052844 150053133 -34235529 + AluSx SINE Alu 1 294 -18 6471 136 80 32 chr4 150053432 150053705 -34234957 - Tigger3b DNA MER2_type -1797 1231 972 1988 115 0 7 chr4 150053705 150053984 -34234678 + AluSx SINE Alu 22 298 -14 6471 136 80 32 chr4 150053984 150054067 -34234595 - Tigger3b DNA MER2_type -2056 972 894 2067 109 0 17 chr4 150054067 150054369 -34234293 + AluSc SINE Alu 1 297 -12 6471 136 80 32 chr4 150054369 150054649 -34234013 - Tigger3b DNA MER2_type -2134 894 629 2141 104 10 13 chr4 150054649 150054948 -34233714 + AluSq SINE Alu 1 298 -15 1829 154 7 10 chr4 150054956 150055254 -34233408 + AluJb SINE Alu 7 303 -9 6471 136 80 32 chr4 150055254 150055463 -34233199 - Tigger3b DNA MER2_type -2405 623 425 221 0 0 33 chr4 150055463 150055493 -34233169 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2170 103 7 0 chr4 150055495 150055777 -34232885 - AluSx SINE Alu -28 284 1 6471 136 80 32 chr4 150055777 150056091 -34232571 - Tigger3b DNA MER2_type -2603 425 1 1373 238 54 0 chr4 150056825 150057174 -34231488 + MER63B DNA MER1_type 1 368 -68 767 169 0 61 chr4 150057287 150057320 -34231342 + FLAM_A SINE Alu 1 34 -277 2867 82 11 13 chr4 150057320 150057696 -34230966 - THE1C LTR MaLR 0 375 1 767 169 0 61 chr4 150057696 150057810 -34230852 + FLAM_A SINE Alu 34 139 -172 1805 155 7 3 chr4 150058323 150058614 -34230048 + AluJo SINE Alu 7 298 -14 2137 107 21 0 chr4 150058990 150059281 -34229381 + AluSx SINE Alu 1 297 -15 573 221 233 6 chr4 150059377 150059549 -34229113 + MER58C DNA MER1_type 5 215 0 470 323 44 22 chr4 150059549 150059775 -34228887 + Charlie8 DNA MER1_type 2 232 -2185 244 77 128 0 chr4 150059918 150059957 -34228705 + MER49 LTR ERV1 847 890 -33 475 301 47 55 chr4 150059968 150060460 -34228202 - L1M4 LINE L1 -1526 4620 4133 2198 102 0 0 chr4 150060487 150060770 -34227892 + AluSx SINE Alu 3 285 -27 228 35 0 0 chr4 150060771 150060800 -34227862 + (CA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr4 150060800 150060823 -34227839 + AT_rich Low_complexity Low_complexity 1 23 0 2328 93 0 3 chr4 150060904 150061204 -34227458 + AluSg SINE Alu 1 299 -11 786 229 38 0 chr4 150061306 150061463 -34227199 + FRAM SINE Alu 1 163 -3 319 228 56 93 chr4 150061504 150061588 -34227074 - L1MC4a LINE L1 -1949 5859 5782 2486 57 0 10 chr4 150061588 150061885 -34226777 + AluY SINE Alu 1 294 -17 319 228 56 93 chr4 150061885 150061962 -34226700 - L1MC4a LINE L1 -2026 5782 5704 420 147 27 0 chr4 150061971 150062046 -34226616 - AluJo SINE Alu -4 308 232 907 184 0 6 chr4 150062047 150062205 -34226457 - AluJo SINE Alu -155 157 1 808 113 9 0 chr4 150062385 150062500 -34226162 + AluSg/x SINE Alu 188 303 -7 1625 116 9 4 chr4 150062500 150062732 -34225930 + AluSc SINE Alu 71 303 -6 3240 158 22 6 chr4 150062735 150063281 -34225381 + L1MB7 LINE L1 5580 6134 -50 1881 139 23 16 chr4 150063284 150063587 -34225075 + AluJo SINE Alu 1 305 -7 711 198 0 9 chr4 150063619 150063735 -34224927 + FLAM_C SINE Alu 2 116 -27 189 74 0 0 chr4 150063736 150063763 -34224899 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 653 130 138 57 chr4 150063814 150063937 -34224725 - AluJo SINE Alu -178 134 2 375 333 37 32 chr4 150065014 150065203 -34223459 - L1MC4a LINE L1 -454 5667 5478 325 286 87 12 chr4 150065210 150065371 -34223291 - L1MC4a LINE L1 -725 5437 5265 2437 75 0 0 chr4 150065382 150065677 -34222985 + AluY SINE Alu 1 295 -16 1606 167 31 17 chr4 150065687 150065981 -34222681 + AluJo SINE Alu 1 298 -14 605 224 0 0 chr4 150066292 150066399 -34222263 - AluJb SINE Alu -30 282 176 2270 128 0 0 chr4 150066406 150066704 -34221958 - AluSx SINE Alu -14 298 1 313 125 0 0 chr4 150066709 150066757 -34221905 - FLAM SINE Alu -1 132 85 198 343 49 20 chr4 150067177 150067279 -34221383 + L2 LINE L2 2557 2661 -653 1858 163 6 10 chr4 150067535 150067848 -34220814 - AluJo SINE Alu 0 312 1 1928 146 3 29 chr4 150067951 150068266 -34220396 + AluJb SINE Alu 1 307 -5 227 271 35 35 chr4 150068701 150068786 -34219876 + MIR SINE MIR 99 183 -79 747 303 113 41 chr4 150068807 150069250 -34219412 - L2 LINE L2 -4 3309 2835 674 298 24 0 chr4 150069441 150069649 -34219013 - MIR SINE MIR -48 214 2 418 228 7 36 chr4 150070713 150070862 -34217800 + MER5A DNA MER1_type 4 189 0 503 263 29 72 chr4 150071127 150071336 -34217326 - MIR SINE MIR -59 203 4 222 273 23 34 chr4 150071377 150071465 -34217197 - MIR3 SINE MIR -48 160 74 759 266 177 54 chr4 150071486 150072058 -34216604 + L2 LINE L2 1875 2516 -798 196 284 53 110 chr4 150072102 150072384 -34216278 + L2 LINE L2 2639 2904 -410 356 335 68 90 chr4 150072434 150072712 -34215950 + L2 LINE L2 2920 3191 -81 2481 40 0 56 chr4 150072772 150073094 -34215568 + AluY SINE Alu 1 304 -7 2242 79 4 0 chr4 150073230 150073535 -34215127 + AluSc SINE Alu 3 308 0 1621 176 60 0 chr4 150073594 150073903 -34214759 + AluJb SINE Alu 1 325 0 2424 88 0 7 chr4 150073917 150074225 -34214437 + AluY SINE Alu 1 306 -5 24 0 0 0 chr4 150075328 150075352 -34213310 + AT_rich Low_complexity Low_complexity 1 24 0 2117 103 0 3 chr4 150076137 150076457 -34212205 + AluY SINE Alu 1 319 0 753 255 89 82 chr4 150076773 150077311 -34211351 + MER34 LTR ERV1 1 542 0 374 133 10 41 chr4 150077811 150077827 -34210835 + GA-rich Low_complexity Low_complexity 2 17 -79 3768 158 15 67 chr4 150077827 150078555 -34210107 + LTR8 LTR ERV1 1 690 -1 374 133 10 41 chr4 150078555 150078636 -34210026 + GA-rich Low_complexity Low_complexity 17 96 0 2316 52 4 0 chr4 150078709 150078980 -34209682 - AluY SINE Alu -24 287 16 752 102 0 0 chr4 150079355 150079453 -34209209 + HY3 scRNA scRNA 1 98 -3 1610 162 3 76 chr4 150079581 150079725 -34208937 + AluJb SINE Alu 1 109 -203 2410 88 0 0 chr4 150079725 150080021 -34208641 + AluSc SINE Alu 1 296 -13 1610 162 3 76 chr4 150080021 150080204 -34208458 + AluJb SINE Alu 109 304 -8 217 318 57 34 chr4 150080451 150080539 -34208123 - MIR SINE MIR -81 127 38 529 140 140 0 chr4 150080610 150080703 -34207959 + U6 snRNA snRNA 1 106 -1 2220 112 3 10 chr4 150080723 150081036 -34207626 + AluY SINE Alu 1 311 0 1467 185 80 46 chr4 150082347 150082698 -34205964 + MLT1A2 LTR MaLR 1 363 -11 587 210 84 42 chr4 150082702 150082869 -34205793 + L2 LINE L2 3139 3312 -1 1870 158 7 0 chr4 150083020 150083317 -34205345 - AluJb SINE Alu -13 299 1 1480 159 99 148 chr4 150083432 150083796 -34204866 + LTR8 LTR ERV1 1 317 -374 24 53 0 0 chr4 150083811 150083849 -34204813 + AT_rich Low_complexity Low_complexity 1 38 0 1236 210 36 36 chr4 150083865 150084170 -34204492 + LTR8 LTR ERV1 310 614 -77 1850 169 28 19 chr4 150184189 150184551 -34104111 - MLT1A1 LTR MaLR 0 365 1 1276 238 123 37 chr4 150185563 150186025 -34102637 + MLT1D LTR MaLR 1 502 -3 22 35 0 0 chr4 150186090 150186119 -34102543 + AT_rich Low_complexity Low_complexity 1 29 0 230 295 51 0 chr4 150186427 150186545 -34102117 - MIR SINE MIR -32 230 105 421 251 18 39 chr4 150186841 150187001 -34101661 + L1ME4a LINE L1 5556 5669 -452 303 275 47 41 chr4 150187400 150187571 -34101091 + L1ME4a LINE L1 5733 5904 -217 451 305 124 5 chr4 150188058 150188268 -34100394 + MIR SINE MIR 28 262 0 1625 153 24 21 chr4 150189176 150189464 -34099198 - AluJo SINE Alu -23 289 1 234 0 0 0 chr4 150189590 150189616 -34099046 + (TAA)n Simple_repeat Simple_repeat 2 27 0 2397 81 0 3 chr4 150190843 150191139 -34097523 + AluSc SINE Alu 1 295 -14 395 248 109 0 chr4 150191240 150191341 -34097321 + MER2 DNA MER2_type 229 340 -5 347 127 0 0 chr4 150191344 150191401 -34097261 + MLT2D LTR ERVL 366 414 0 2155 128 7 0 chr4 150191516 150191820 -34096842 + AluJb SINE Alu 5 310 -2 601 257 162 30 chr4 150192334 150192481 -34096181 - L1ME4a LINE L1 -1 6120 5994 1968 183 29 10 chr4 150192481 150192864 -34095798 - MLT1B LTR MaLR 0 390 1 601 257 162 30 chr4 150192864 150193191 -34095471 - L1ME4a LINE L1 -127 5994 5583 2155 162 0 73 chr4 150193296 150193697 -34094965 + MER57A LTR ERV1 8 378 -25 2533 128 45 33 chr4 150193697 150194073 -34094589 + MSTA LTR MaLR 1 384 -44 2355 105 3 6 chr4 150194073 150194386 -34094276 - AluSx SINE Alu 0 312 1 2533 128 45 33 chr4 150194386 150194432 -34094230 + MSTA LTR MaLR 384 428 0 2155 162 0 73 chr4 150194432 150194457 -34094205 + MER57A LTR ERV1 378 403 0 393 22 0 0 chr4 150197430 150197476 -34091186 + (TG)n Simple_repeat Simple_repeat 2 47 0 300 27 0 0 chr4 150198255 150198292 -34090370 + (T)n Simple_repeat Simple_repeat 1 37 0 185 289 148 21 chr4 150199469 150199611 -34089051 + MER5A DNA MER1_type 1 160 -29 469 140 243 9 chr4 150200603 150200710 -34087952 + FLAM_C SINE Alu 2 133 0 281 371 82 6 chr4 150201358 150201517 -34087145 + L3 LINE CR1 1050 1220 -357 230 0 33 0 chr4 150201812 150201842 -34086820 + (CAT)n Simple_repeat Simple_repeat 2 32 0 2100 96 3 0 chr4 150201846 150202154 -34086508 - AluSx SINE Alu 0 309 1 211 182 0 0 chr4 150202421 150202454 -34086208 + polypyrimidine Low_complexity Low_complexity 3 35 0 2740 177 34 29 chr4 150202480 150202659 -34086003 + L1MD1 LINE L1 5313 5490 -752 1665 191 0 9 chr4 150202659 150202974 -34085688 + AluSx SINE Alu 1 312 0 2740 177 34 29 chr4 150202974 150203377 -34085285 + L1MD1 LINE L1 5490 5898 -344 1126 152 24 0 chr4 150203479 150203689 -34084973 - AluJo SINE Alu -14 298 84 251 253 81 10 chr4 150203691 150203790 -34084872 - L1 LINE L1 -1317 4829 4724 2830 249 72 37 chr4 150203868 150204107 -34084555 - L1ME3A LINE L1 -8 6162 5933 3919 133 42 57 chr4 150204107 150204688 -34083974 - L1MB3 LINE L1 0 6183 5614 2287 111 73 14 chr4 150204688 150205032 -34083630 - THE1B LTR MaLR 0 364 1 3919 133 42 57 chr4 150205032 150205226 -34083436 - L1MB3 LINE L1 -569 5614 5419 2830 249 72 37 chr4 150205226 150207147 -34081515 - L1ME3A LINE L1 -237 5933 3904 2316 122 40 6 chr4 150207147 150207499 -34081163 - THE1B LTR MaLR 0 364 1 2830 249 72 37 chr4 150207499 150207543 -34081119 - L1ME3A LINE L1 -2266 3904 3863 553 332 54 23 chr4 150207544 150207930 -34080732 + L2 LINE L2 2127 2524 -790 802 145 80 0 chr4 150208165 150208303 -34080359 - L1M3 LINE L1 -386 5797 5649 2145 109 7 0 chr4 150209017 150209320 -34079342 + AluSx SINE Alu 1 305 -7 225 0 0 0 chr4 150209891 150209916 -34078746 + (GA)n Simple_repeat Simple_repeat 2 26 0 1656 103 43 39 chr4 150210381 150210529 -34078133 + L1MB3 LINE L1 5855 6006 -177 1940 130 3 10 chr4 150210529 150210836 -34077826 - AluSx SINE Alu -7 305 1 1656 103 43 39 chr4 150210836 150210969 -34077693 + L1MB3 LINE L1 6006 6137 -46 1251 141 0 5 chr4 150210972 150211205 -34077457 + AluJo SINE Alu 87 318 0 307 0 0 0 chr4 150211171 150211264 -34077398 + (TAA)n Simple_repeat Simple_repeat 1 93 0 * 1707 179 0 13 chr4 150211274 150211582 -34077080 + AluJo SINE Alu 1 304 -8 215 313 0 38 chr4 150212981 150213061 -34075601 + MIR SINE MIR 89 165 -97 259 247 49 12 chr4 150214057 150214111 -34074551 - HsTC2 DNA Tc2 -1812 86 27 207 0 0 0 chr4 150214111 150214134 -34074528 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 259 247 49 12 chr4 150214134 150214160 -34074502 - HsTC2 DNA Tc2 -1871 27 3 1272 197 80 21 chr4 150214520 150214845 -34073817 - MER2 DNA MER2_type 0 344 1 396 179 13 26 chr4 150214851 150214929 -34073733 - Tigger5 DNA MER2_type 0 2323 2247 1501 128 0 9 chr4 150214930 150215156 -34073506 + AluSx SINE Alu 1 224 -88 194 333 19 0 chr4 150215526 150215580 -34073082 + L2 LINE L2 3187 3241 -31 342 296 0 0 chr4 150215581 150215652 -34073010 + L2 LINE L2 3200 3270 -2 2182 93 17 0 chr4 150216031 150216322 -34072340 + AluSx SINE Alu 1 296 -16 480 18 0 0 chr4 150217052 150217109 -34071553 + (CA)n Simple_repeat Simple_repeat 2 58 0 3534 152 35 40 chr4 150217353 150217492 -34071170 + L1MB7 LINE L1 5314 5452 -732 2029 92 0 21 chr4 150217492 150217815 -34070847 + AluSc SINE Alu 1 317 0 3534 152 35 40 chr4 150217815 150218058 -34070604 + L1MB7 LINE L1 5452 5695 -489 1689 172 3 7 chr4 150218058 150218361 -34070301 + AluJb SINE Alu 1 302 -10 3534 152 35 40 chr4 150218361 150218684 -34069978 + L1MB7 LINE L1 5695 6020 -164 432 177 0 31 chr4 150218776 150218872 -34069790 - L1MB8 LINE L1 -5 6173 6081 462 165 6 148 chr4 150218872 150219048 -34069614 + L1MC5 LINE L1 6852 7002 -959 1484 258 138 10 chr4 150219055 150219450 -34069212 - MLT1G LTR MaLR -8 582 104 2153 113 0 0 chr4 150219450 150219742 -34068920 - AluSx SINE Alu -19 293 2 1484 258 138 10 chr4 150219742 150219861 -34068801 - MLT1G LTR MaLR -486 104 2 471 230 103 44 chr4 150219861 150220065 -34068597 + L1MC5 LINE L1 6996 7211 -750 585 221 81 74 chr4 150220066 150220337 -34068325 + L1MC5 LINE L1 7255 7527 -434 1992 149 0 0 chr4 150221860 150222169 -34066493 + AluSx SINE Alu 1 309 -3 622 292 90 9 chr4 150222235 150222463 -34066199 + MIR SINE MIR 6 249 -13 1871 104 54 4 chr4 150222954 150223233 -34065429 - AluSx SINE Alu -19 293 1 190 242 0 48 chr4 150223724 150223786 -34064876 + MIR SINE MIR 161 219 -43 208 167 28 0 chr4 150224692 150224728 -34063934 - L2 LINE L2 -15 3257 3221 353 264 63 72 chr4 150224799 150224997 -34063665 - MIR SINE MIR -55 207 3 258 250 57 0 chr4 150226934 150227022 -34061640 - L1ME4a LINE L1 -16 6105 6013 709 171 0 0 chr4 150227034 150227145 -34061517 - FLAM_C SINE Alu -21 122 12 801 263 139 57 chr4 150227842 150228318 -34060344 + MLT1G1 LTR MaLR 81 595 0 320 229 309 17 chr4 150228482 150228657 -34060005 - MIR SINE MIR -34 228 3 1221 194 73 52 chr4 150229024 150229197 -34059465 + MER58B DNA MER1_type 1 169 -2251 1782 160 139 16 chr4 150229197 150229578 -34059084 + MSTA LTR MaLR 1 428 0 8858 155 57 31 chr4 150229578 150231187 -34057475 + MSTA-int LTR MaLR 1 1651 0 2253 141 88 8 chr4 150231187 150231583 -34057079 + MSTA LTR MaLR 1 428 0 1221 194 73 52 chr4 150231583 150231736 -34056926 + MER58B DNA MER1_type 168 336 -5 255 330 72 0 chr4 150231877 150231993 -34056669 + MIR SINE MIR 31 155 -65 204 135 0 0 chr4 150232399 150232436 -34056226 + (A)n Simple_repeat Simple_repeat 1 37 0 224 219 125 42 chr4 150233078 150233174 -34055488 + MIR SINE MIR 130 233 -29 1763 176 3 10 chr4 150233215 150233527 -34055135 - AluJo SINE Alu -2 310 1 216 200 0 0 chr4 150233813 150233853 -34054809 - MIR SINE MIR -72 136 97 1009 253 32 84 chr4 150234191 150234570 -34054092 + MLT1J LTR MaLR 101 459 -52 254 234 0 62 chr4 150234684 150234748 -34053914 + L2 LINE L2 3014 3073 -240 413 101 56 11 chr4 150234835 150234924 -34053738 + CT-rich Low_complexity Low_complexity 2 94 0 412 270 66 15 chr4 150234927 150235064 -34053598 + L2 LINE L2 3168 3311 -2 1886 122 99 32 chr4 150235694 150236039 -34052623 - THE1C LTR MaLR 0 375 8 316 242 99 22 chr4 150236147 150236238 -34052424 - L2 LINE L2 -1 3271 3174 1681 221 23 50 chr4 150238063 150238543 -34050119 + MLT1C LTR MaLR 1 467 0 1598 226 50 35 chr4 150238734 150238916 -34049746 - L1ME2 LINE L1 -151 6013 5835 2038 126 0 7 chr4 150238916 150239218 -34049444 - AluSx SINE Alu -12 300 1 1598 226 50 35 chr4 150239218 150239490 -34049172 - L1ME2 LINE L1 -329 5835 5552 258 229 0 0 chr4 150239496 150239544 -34049118 + L1ME LINE L1 5551 5598 -566 256 357 10 0 chr4 150239636 150239734 -34048928 - L1ME2 LINE L1 -629 5537 5439 263 238 36 36 chr4 150240842 150240926 -34047736 - MIR SINE MIR -126 136 53 1766 162 46 21 chr4 150241129 150241527 -34047135 - MLT1C LTR MaLR 0 390 1 1830 155 0 10 chr4 150242848 150243151 -34045511 - AluJo SINE Alu -12 300 1 874 238 42 5 chr4 150243230 150243444 -34045218 - L1ME2 LINE L1 -95 6069 5848 189 335 245 15 chr4 150243520 150243720 -34044942 + MIR SINE MIR 3 248 -14 313 227 0 0 chr4 150244167 150244233 -34044429 - L2 LINE L2 -65 3207 3142 225 234 0 0 chr4 150245042 150245089 -34043573 - MER81 DNA DNA -20 94 48 235 246 31 46 chr4 150245441 150245506 -34043156 - MIR SINE MIR -184 78 15 221 233 116 23 chr4 150245638 150245724 -34042938 + MER5A DNA MER1_type 80 173 -16 613 226 0 8 chr4 150246258 150246382 -34042280 + MER69A DNA AcHobo 49 171 -6 2190 105 0 0 chr4 150248055 150248349 -34040313 + AluSx SINE Alu 16 309 -3 1756 166 58 0 chr4 150250372 150250650 -34038012 + AluJb SINE Alu 1 294 -18 22 0 0 0 chr4 150251244 150251266 -34037396 + AT_rich Low_complexity Low_complexity 1 22 0 686 190 8 0 chr4 150251426 150251547 -34037115 - FRAM SINE Alu -54 122 1 2608 200 35 0 chr4 150251579 150252093 -34036569 + L1MDa LINE L1 16 547 -5993 782 165 15 12 chr4 150252110 150252591 -34036071 + (CA)n Simple_repeat Simple_repeat 1 482 0 2463 156 21 14 chr4 150252591 150253013 -34035649 - MSTB LTR MaLR -1 425 1 8438 170 68 10 chr4 150253013 150254573 -34034089 - MSTB-int LTR MaLR 0 1651 1 2324 160 47 5 chr4 150254574 150254980 -34033682 - MSTB LTR MaLR -1 425 3 284 48 24 0 chr4 150254980 150255022 -34033640 + (CA)n Simple_repeat Simple_repeat 1 43 0 3830 200 132 30 chr4 150255022 150256091 -34032571 + L1MDa LINE L1 591 1768 -4772 2631 162 21 44 chr4 150256091 150256610 -34032052 + L1MD1 LINE L1 5736 6242 0 2010 141 16 157 chr4 150256610 150256683 -34031979 - Charlie1 DNA MER1_type -50 2711 2629 2299 105 0 0 chr4 150256683 150256979 -34031683 + AluSq SINE Alu 1 296 -17 2010 141 16 157 chr4 150256979 150257007 -34031655 - Charlie1 DNA MER1_type -132 2629 2599 1625 158 32 18 chr4 150257007 150257128 -34031534 + AluJb SINE Alu 13 131 -181 2551 57 10 0 chr4 150257128 150257428 -34031234 + AluY SINE Alu 1 303 -8 1625 158 32 18 chr4 150257428 150257591 -34031071 + AluJb SINE Alu 131 301 -11 2010 141 16 157 chr4 150257591 150257992 -34030670 - Charlie1 DNA MER1_type -162 2599 2310 1724 105 78 4 chr4 150257992 150258249 -34030413 + AluSc SINE Alu 18 293 -16 2010 141 16 157 chr4 150258249 150258370 -34030292 - Charlie1 DNA MER1_type -451 2310 2174 189 352 112 0 chr4 150259254 150259379 -34029283 + L2 LINE L2 3126 3264 -8 270 216 91 0 chr4 150260235 150260323 -34028339 - MIR SINE MIR -25 237 142 341 278 33 94 chr4 150260810 150261055 -34027607 + Charlie8 DNA MER1_type 1 230 -2187 577 350 67 37 chr4 150261222 150261851 -34026811 - L2 LINE L2 -470 2844 2197 777 178 0 0 chr4 150261872 150262001 -34026661 - FLAM_C SINE Alu 0 133 5 399 244 105 71 chr4 150262521 150262816 -34025846 - L1ME3A LINE L1 -217 5947 5643 899 150 0 0 chr4 150262952 150263079 -34025583 - FLAM_C SINE Alu -16 127 1 2105 121 10 0 chr4 150263164 150263454 -34025208 + AluSg SINE Alu 1 293 -17 894 192 0 22 chr4 150264438 150264620 -34024042 - MER5B DNA MER1_type 0 178 1 290 247 0 0 chr4 150264749 150264826 -34023836 - MIR SINE MIR -106 156 80 396 280 50 44 chr4 150265992 150266174 -34022488 + MIR SINE MIR 67 249 -13 820 216 53 0 chr4 150267578 150267749 -34020913 + MER63A DNA MER1_type 13 192 -18 2084 135 0 7 chr4 150268418 150268715 -34019947 - AluSx SINE Alu -17 295 1 1803 171 7 0 chr4 150268791 150269071 -34019591 + AluJo SINE Alu 1 282 -30 25 0 0 0 chr4 150269071 150269096 -34019566 + AT_rich Low_complexity Low_complexity 1 25 0 2090 136 0 3 chr4 150269097 150269392 -34019270 + AluSx SINE Alu 1 294 -18 2086 113 0 13 chr4 150270281 150270583 -34018079 - AluSx SINE Alu -14 298 1 2101 116 20 0 chr4 150271619 150271911 -34016751 - AluY SINE Alu -8 303 6 1471 179 51 15 chr4 150273041 150273315 -34015347 + AluJo SINE Alu 1 284 -28 236 311 67 30 chr4 150273632 150273796 -34014866 + MER5B DNA MER1_type 1 170 -8 231 204 0 0 chr4 150276439 150276488 -34012174 + (CA)n Simple_repeat Simple_repeat 2 50 0 1568 178 91 0 chr4 150279064 150279340 -34009322 + AluJo SINE Alu 1 301 -11 1889 140 0 37 chr4 150279406 150279706 -34008956 - AluJb SINE Alu -23 289 1 250 181 88 110 chr4 150281041 150281223 -34007439 + MIR3 SINE MIR 9 186 -22 1431 223 16 19 chr4 150283686 150284005 -34004657 - MSTD LTR MaLR -75 321 4 2467 78 0 0 chr4 150284976 150285270 -34003392 - AluY SINE Alu -17 294 1 1623 152 119 0 chr4 150285621 150285915 -34002747 + MER7A DNA MER2_type 1 326 -20 6214 162 19 14 chr4 150286663 150287707 -34000955 + L1MC1 LINE L1 5188 6242 -91 189 0 0 0 chr4 150287707 150287728 -34000934 + (TG)n Simple_repeat Simple_repeat 2 22 0 6214 162 19 14 chr4 150287728 150287821 -34000841 + L1MC1 LINE L1 6242 6333 0 222 209 23 0 chr4 150288523 150288566 -34000096 + MIR SINE MIR 53 96 -112 482 213 58 45 chr4 150288754 150288909 -33999753 + MIR SINE MIR 64 220 -42 2711 224 40 52 chr4 150289754 150290043 -33998619 - L1ME3 LINE L1 -1 6161 5870 2486 83 0 10 chr4 150290043 150290357 -33998305 - AluSq SINE Alu -2 311 1 2711 224 40 52 chr4 150290357 150290894 -33997768 - L1ME3 LINE L1 -292 5870 5345 989 136 0 0 chr4 150290897 150291044 -33997618 + MSTB2 LTR MaLR 1 147 -310 5564 119 24 9 chr4 150291045 150291904 -33996758 - L1PA16 LINE L1 0 6166 5295 404 123 15 0 chr4 150291910 150291975 -33996687 + AluSp/q SINE Alu 239 304 -9 558 255 13 0 chr4 150291977 150292130 -33996532 - L1ME3 LINE L1 -1088 5058 4904 1652 220 56 2 chr4 150292139 150292535 -33996127 - L1P LINE L1 -848 5298 4882 379 161 0 0 chr4 150292535 150292597 -33996065 + MSTB1 LTR MaLR 369 430 -2 1460 264 47 28 chr4 150292603 150292888 -33995774 - L1M4 LINE L1 -804 5342 5064 1851 168 20 3 chr4 150292888 150293186 -33995476 + AluJo SINE Alu 1 303 -9 1460 264 47 28 chr4 150293186 150293476 -33995186 - L1M4 LINE L1 -1082 5064 4756 304 239 46 0 chr4 150293526 150293635 -33995027 - MER69 DNA AcHobo -188 2338 2225 2047 149 0 0 chr4 150293661 150293950 -33994712 - AluSx SINE Alu -9 303 15 1035 222 160 62 chr4 150293966 150294155 -33994507 - L1ME3A LINE L1 -6 6164 5995 2205 100 0 0 chr4 150294155 150294434 -33994228 - AluSx SINE Alu -31 281 3 1035 222 160 62 chr4 150294434 150294613 -33994049 - L1ME3A LINE L1 -175 5995 5760 2781 104 3 3 chr4 150294613 150294987 -33993675 - THE1C LTR MaLR 0 375 2 887 250 45 8 chr4 150295095 150295339 -33993323 - L1ME3A LINE L1 -616 5550 5298 204 356 11 11 chr4 150295436 150295523 -33993139 + MER5B DNA MER1_type 26 112 -66 613 193 68 65 chr4 150295545 150295760 -33992902 - L1MD3 LINE L1 0 8026 7848 200 86 29 0 chr4 150296091 150296126 -33992536 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 201 147 0 0 chr4 150296412 150296446 -33992216 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 271 310 36 25 chr4 150296446 150296685 -33991977 - L1M1 LINE L1 -4613 1602 1498 540 274 51 63 chr4 150296934 150297171 -33991491 - L1MEd LINE L1 -5053 1066 833 365 324 125 33 chr4 150297181 150297669 -33990993 - L1MEd LINE L1 -5351 768 236 210 279 16 33 chr4 150298596 150298718 -33989944 + GA-rich Low_complexity Low_complexity 3 122 0 183 304 179 18 chr4 150299773 150299885 -33988777 + L2 LINE L2 2997 3126 -146 220 325 106 33 chr4 150299932 150300083 -33988579 + L2 LINE L2 3107 3268 -4 1343 166 0 0 chr4 150300110 150300309 -33988353 + AluJo SINE Alu 37 235 -77 207 0 0 0 chr4 150300726 150300749 -33987913 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 756 143 0 0 chr4 150300921 150301047 -33987615 + (TTTC)n Simple_repeat Simple_repeat 2 127 0 728 199 15 0 chr4 150301054 150301185 -33987477 - FLAM_A SINE Alu 0 133 1 532 204 14 28 chr4 150301610 150301744 -33986918 + MER53 DNA DNA 6 139 -50 1981 164 0 3 chr4 150301744 150302037 -33986625 + AluJb SINE Alu 1 292 -20 257 193 0 53 chr4 150302049 150302106 -33986556 + L1MB2 LINE L1 6079 6132 -39 357 169 14 0 chr4 150302126 150302197 -33986465 - MER53 DNA DNA -117 72 1 731 199 0 22 chr4 150303262 150303398 -33985264 + FLAM_C SINE Alu 1 133 0 497 145 21 23 chr4 150303461 150303567 -33985095 + MLT1C LTR MaLR 2 105 -285 5865 75 14 5 chr4 150303567 150304401 -33984261 + L1PA11 LINE L1 5333 6174 0 261 83 0 0 chr4 150304654 150304690 -33983972 + (TA)n Simple_repeat Simple_repeat 2 37 0 25 51 0 0 chr4 150305114 150305153 -33983509 + AT_rich Low_complexity Low_complexity 1 39 0 1675 214 32 11 chr4 150305230 150305609 -33983053 + MLT1C LTR MaLR 81 467 0 409 281 67 7 chr4 150305634 150305769 -33982893 - MIR SINE MIR -32 230 88 1789 178 0 10 chr4 150305987 150306290 -33982372 + AluJo SINE Alu 10 309 -3 228 207 17 17 chr4 150306423 150306481 -33982181 - MLT1I LTR MaLR -1 408 351 310 298 35 18 chr4 150306961 150307075 -33981587 + L1M2 LINE L1 2752 2867 -3982 1395 208 76 3 chr4 150308799 150309140 -33979522 + MLT2D LTR ERVL 1 366 -48 231 196 0 0 chr4 150309153 150309199 -33979463 + (CA)n Simple_repeat Simple_repeat 1 46 0 2220 100 0 27 chr4 150309335 150309636 -33979026 + AluSx SINE Alu 1 293 -19 295 283 212 0 chr4 150310930 150311043 -33977619 + MIR SINE MIR 61 197 -65 201 271 0 0 chr4 150311247 150311295 -33977367 + MIR SINE MIR 80 127 -135 280 264 85 0 chr4 150311879 150311985 -33976677 + MIR3 SINE MIR 87 201 -7 382 304 202 0 chr4 150312174 150312342 -33976320 + MIR SINE MIR 12 213 -49 238 333 83 8 chr4 150312452 150312584 -33976078 - MARNA DNA Mariner -302 284 143 224 235 49 128 chr4 150312811 150312913 -33975749 + MIR SINE MIR 29 122 -86 446 228 79 75 chr4 150313465 150313693 -33974969 + L1ME3A LINE L1 5942 6170 0 412 278 53 41 chr4 150314348 150314517 -33974145 + MIR3 SINE MIR 6 176 -32 189 74 0 0 chr4 150314794 150314821 -33973841 + (TG)n Simple_repeat Simple_repeat 2 28 0 385 294 38 99 chr4 150314842 150315012 -33973650 - L1ME3A LINE L1 -203 5967 5788 2390 75 0 7 chr4 150315012 150315306 -33973356 - AluY SINE Alu -19 292 1 2217 114 7 3 chr4 150315310 150315609 -33973053 - AluSx SINE Alu -12 300 1 385 294 38 99 chr4 150315609 150315725 -33972937 - L1ME3A LINE L1 -385 5785 5694 397 304 30 30 chr4 150316034 150316169 -33972493 + L2 LINE L2 3118 3252 -20 247 235 147 0 chr4 150316234 150316336 -33972326 - MER96 DNA MER1_type? -8 167 51 2293 125 0 0 chr4 150316385 150316690 -33971972 - AluSx SINE Alu -7 305 1 255 233 0 0 chr4 150318721 150318781 -33969881 + CT-rich Low_complexity Low_complexity 3 62 0 1839 165 3 3 chr4 150319282 150319573 -33969089 - AluJb SINE Alu -17 295 5 334 309 29 48 chr4 150320159 150320369 -33968293 - L2 LINE L2 -6 3307 3102 307 272 61 18 chr4 150320393 150320507 -33968155 + MIR3 SINE MIR 37 155 -53 219 239 0 0 chr4 150321711 150321757 -33966905 - L2 LINE L2 -23 3249 3204 1166 167 16 66 chr4 150322141 150322338 -33966324 + L1MB3 LINE L1 5938 6121 -62 2187 123 0 0 chr4 150322338 150322631 -33966031 + AluSx SINE Alu 1 293 -19 1166 167 16 66 chr4 150322631 150322690 -33965972 + L1MB3 LINE L1 6121 6181 -2 198 0 0 0 chr4 150323676 150323698 -33964964 + (TTG)n Simple_repeat Simple_repeat 3 24 0 22 0 0 0 chr4 150323736 150323758 -33964904 + AT_rich Low_complexity Low_complexity 1 22 0 183 146 0 0 chr4 150324909 150324950 -33963712 + (GGA)n Simple_repeat Simple_repeat 1 41 0 382 356 17 22 chr4 150325741 150325921 -33962741 + MIR3 SINE MIR 18 196 -12 465 317 77 19 chr4 150326451 150326659 -33962003 + MIR SINE MIR 19 238 -24 548 112 0 0 chr4 150326993 150327077 -33961585 - L1MB4 LINE L1 -37 6143 6060 1015 64 16 0 chr4 150328661 150328786 -33959876 + AluSc SINE Alu 1 127 -182 291 141 0 0 chr4 150328786 150328850 -33959812 + (CA)n Simple_repeat Simple_repeat 1 64 0 1202 103 11 0 chr4 150328851 150329025 -33959637 + AluSc SINE Alu 133 308 -1 21 82 0 0 chr4 150330435 150330484 -33958178 + GC_rich Low_complexity Low_complexity 1 49 0 22 103 0 0 chr4 150331639 150331717 -33956945 + GC_rich Low_complexity Low_complexity 1 78 0 195 204 0 0 chr4 150332223 150332272 -33956390 + (CA)n Simple_repeat Simple_repeat 1 49 0 336 147 44 29 chr4 150332974 150333042 -33955620 + MER103 DNA DNA 95 163 -3 1245 124 99 15 chr4 150333176 150333378 -33955284 + MER20 DNA MER1_type 1 219 0 202 246 70 0 chr4 150333962 150334019 -33954643 + MIR SINE MIR 140 200 -62 205 304 0 63 chr4 150334507 150334586 -33954076 + L2 LINE L2 3126 3199 -73 833 303 38 19 chr4 150335277 150335650 -33953012 - L1MC4 LINE L1 -111 7931 7552 * 1483 192 69 6 chr4 150335636 150335701 -33952961 + L1 LINE L1 4206 4265 -1881 288 0 0 0 chr4 150335701 150335733 -33952929 + (CA)n Simple_repeat Simple_repeat 1 32 0 1483 192 69 6 chr4 150335733 150336064 -33952598 + L1 LINE L1 4265 4605 -1541 496 192 60 148 chr4 150336127 150336207 -33952455 - L1MC4 LINE L1 -890 7152 7067 1982 141 73 6 chr4 150336207 150336547 -33952115 + MER47A DNA MER2_type 3 365 -1 496 192 60 148 chr4 150336547 150336784 -33951878 - L1MC4 LINE L1 -975 7067 6863 876 280 151 62 chr4 150337045 150337574 -33951088 - MLT1K LTR MaLR 0 588 13 180 111 0 0 chr4 150338186 150338213 -33950449 + (TCTCCC)n Simple_repeat Simple_repeat 5 31 0 956 221 90 52 chr4 150339282 150339649 -33949013 - MLT1B LTR MaLR -9 381 1 207 0 0 0 chr4 150340000 150340023 -33948639 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 695 271 49 9 chr4 150343451 150343676 -33944986 + MIR SINE MIR 4 237 -25 429 285 36 30 chr4 150344266 150344431 -33944231 - LTR33 LTR ERVL -306 215 50 405 0 0 0 chr4 150344614 150344659 -33944003 + (TCTCC)n Simple_repeat Simple_repeat 1 45 0 306 323 137 69 chr4 150344979 150345329 -33943333 - L2 LINE L2 0 3272 2899 367 338 110 17 chr4 150346427 150346664 -33941998 + L2 LINE L2 477 735 -2579 1116 230 109 44 chr4 150346665 150347095 -33941567 - MLT1C LTR MaLR -1 466 9 1195 283 140 91 chr4 150347107 150348732 -33939930 + L2 LINE L2 759 2466 -848 378 267 17 17 chr4 150348952 150349068 -33939594 - LTR67 LTR ERVL -4 553 438 186 43 0 0 chr4 150350011 150350034 -33938628 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 184 250 23 0 chr4 150350094 150350138 -33938524 + MER5A DNA MER1_type 6 50 -139 225 241 17 0 chr4 150350177 150350235 -33938427 + (CACCC)n Simple_repeat Simple_repeat 1 59 0 1889 174 0 0 chr4 150350461 150350760 -33937902 - AluJb SINE Alu -13 299 1 816 27 27 0 chr4 150350849 150350960 -33937702 + (TAGA)n Simple_repeat Simple_repeat 1 114 0 218 215 0 15 chr4 150351102 150351167 -33937495 + A-rich Low_complexity Low_complexity 2 65 0 286 247 64 25 chr4 150351414 150351575 -33937087 - L1MC/D LINE L1 -312 5858 5718 626 254 19 39 chr4 150351579 150351784 -33936878 - L1MC/D LINE L1 -539 5582 5382 1556 192 3 31 chr4 150351784 150351907 -33936755 - AluJb SINE Alu -3 309 184 4311 76 7 2 chr4 150351907 150352457 -33936205 + MER41A LTR ERV1 1 553 -1 1556 192 3 31 chr4 150352457 150352650 -33936012 - AluJb SINE Alu -128 184 2 309 252 36 27 chr4 150352698 150352809 -33935853 - L1MC/D LINE L1 -831 5315 5204 1076 214 66 30 chr4 150352856 150353127 -33935535 - MER21B LTR ERV1 -485 378 98 306 253 0 36 chr4 150353190 150353273 -33935389 - MER21B LTR ERV1 -783 80 1 1799 211 102 101 chr4 150353373 150353446 -33935216 - MER63D DNA MER1_type 0 1061 990 1675 178 96 39 chr4 150353446 150353862 -33934800 - LTR47B LTR ERVL -3 440 1 1799 211 102 101 chr4 150353862 150354790 -33933872 - MER63D DNA MER1_type -71 990 56 243 0 0 0 chr4 150354790 150354817 -33933845 + (CA)n Simple_repeat Simple_repeat 2 28 0 1799 211 102 101 chr4 150354817 150354874 -33933788 - MER63D DNA MER1_type -1005 56 1 2708 32 3 6 chr4 150354951 150355262 -33933400 + AluY SINE Alu 1 310 -1 1102 179 148 27 chr4 150355696 150355828 -33932834 + AluJo SINE Alu 1 116 -186 1748 176 3 17 chr4 150355828 150356124 -33932538 + AluJo SINE Alu 1 292 -20 1102 179 148 27 chr4 150356124 150356248 -33932414 + AluJo SINE Alu 116 288 -14 27 0 0 0 chr4 150356248 150356275 -33932387 + AT_rich Low_complexity Low_complexity 1 27 0 1996 158 75 64 chr4 150357403 150357859 -33930803 + MLT2C2 LTR ERVL 4 464 0 266 356 20 0 chr4 150358428 150358529 -33930133 + L2 LINE L2 3161 3263 -9 469 292 73 60 chr4 150358563 150358796 -33929866 - MIR SINE MIR -19 243 8 352 215 0 0 chr4 150358983 150359048 -33929614 + MIR3 SINE MIR 112 176 -32 2036 132 0 29 chr4 150359087 150359397 -33929265 - AluSx SINE Alu -11 301 1 1820 174 0 10 chr4 150360203 150360496 -33928166 + AluJo SINE Alu 1 290 -22 2291 90 3 7 chr4 150361126 150361427 -33927235 + AluSx SINE Alu 1 300 -12 1862 163 3 0 chr4 150362298 150362598 -33926064 + AluJo SINE Alu 1 301 -11 1723 224 57 13 chr4 150364620 150365008 -33923654 - MLT1J LTR MaLR -84 427 23 465 312 14 0 chr4 150365656 150365794 -33922868 + MIR SINE MIR 9 148 -114 1472 220 81 60 chr4 150365834 150365950 -33922712 - MLT1D LTR MaLR -22 483 371 2290 100 10 0 chr4 150365950 150366251 -33922411 + AluSq SINE Alu 1 304 -9 1472 220 81 60 chr4 150366251 150366603 -33922059 - MLT1D LTR MaLR -134 371 5 301 310 0 0 chr4 150366612 150366728 -33921934 + MIR SINE MIR 147 262 0 2222 105 3 3 chr4 150366735 150367052 -33921610 - AluSq SINE Alu 0 317 1 441 204 170 48 chr4 150367599 150367746 -33920916 - MLT1I LTR MaLR -43 366 202 445 304 30 0 chr4 150369923 150370058 -33918604 - Charlie8 DNA MER1_type -2241 176 38 1634 188 45 0 chr4 150370287 150370575 -33918087 + AluJo SINE Alu 1 301 -11 1023 207 43 0 chr4 150370713 150370921 -33917741 - MIR SINE MIR -34 228 12 369 0 0 0 chr4 150371296 150371337 -33917325 + (CA)n Simple_repeat Simple_repeat 2 42 0 1335 194 21 28 chr4 150371337 150371626 -33917036 - AluJb SINE Alu -14 288 2 804 129 0 9 chr4 150371646 150371762 -33916900 - FLAM_C SINE Alu -17 116 2 307 319 25 32 chr4 150371910 150372067 -33916595 - L1ME3A LINE L1 -8 6162 6007 833 294 66 7 chr4 150372071 150372600 -33916062 - L1MD3 LINE L1 -604 5560 5238 375 340 48 43 chr4 150372609 150372797 -33915865 + L3 LINE CR1 174 362 -1215 203 298 143 0 chr4 150372871 150372955 -33915707 - MIR SINE MIR -50 212 117 197 219 211 53 chr4 150373000 150373114 -33915548 + L3 LINE CR1 398 529 -1048 1676 181 14 0 chr4 150373228 150373516 -33915146 + AluJo SINE Alu 1 292 -20 4391 186 22 10 chr4 150373536 150374308 -33914354 + L1PA14 LINE L1 10 790 -6791 7684 172 11 17 chr4 150374312 150375738 -33912924 + L1PA14 LINE L1 4288 5704 -1880 15358 186 76 22 chr4 150375750 150376101 -33912561 - L1PB1 LINE L1 -8 6859 6529 216 0 0 0 chr4 150376101 150376125 -33912537 + (TG)n Simple_repeat Simple_repeat 2 25 0 15358 186 76 22 chr4 150376125 150382227 -33906435 - L1PB1 LINE L1 -338 6529 6 5805 120 14 26 chr4 150382251 150383300 -33905362 + L1PA14 LINE L1 5691 6739 -860 1976 119 42 3 chr4 150383300 150383416 -33905246 + AluSx SINE Alu 1 111 -201 372 22 0 0 chr4 150383416 150383461 -33905201 + (CA)n Simple_repeat Simple_repeat 2 46 0 1976 119 42 3 chr4 150383461 150383630 -33905032 + AluSx SINE Alu 111 297 -15 5805 120 14 26 chr4 150383630 150384479 -33904183 + L1PA14 LINE L1 6739 7597 -2 1615 77 0 14 chr4 150384594 150384802 -33903860 + AluY SINE Alu 89 293 -18 337 279 68 112 chr4 150485112 150485363 -33803299 - MLT1J LTR MaLR -116 395 156 216 246 16 16 chr4 150485495 150485556 -33803106 - MIR SINE MIR -45 217 157 198 0 0 0 chr4 150485613 150485635 -33803027 + (CACTG)n Simple_repeat Simple_repeat 1 22 0 1884 97 0 8 chr4 150485680 150485939 -33802723 + AluSx SINE Alu 1 257 -55 1236 190 18 102 chr4 150486055 150486387 -33802275 - MLT1A1 LTR MaLR -61 304 1 2430 48 3 19 chr4 150486532 150486848 -33801814 - AluY SINE Alu 0 311 1 245 250 83 0 chr4 150487504 150487588 -33801074 - L2 LINE L2 -189 3083 2993 1897 119 7 7 chr4 150487595 150487880 -33800782 + AluSx SINE Alu 7 291 -21 491 123 0 0 chr4 150487883 150487948 -33800714 + AluSc SINE Alu 134 198 -111 637 154 0 10 chr4 150488232 150488336 -33800326 + AluJb SINE Alu 2 104 -208 1220 137 0 11 chr4 150488426 150488616 -33800046 + AluSg/x SINE Alu 109 296 -16 288 0 0 0 chr4 150488617 150488649 -33800013 + (CA)n Simple_repeat Simple_repeat 2 33 0 291 157 0 0 chr4 150488652 150488703 -33799959 + (TA)n Simple_repeat Simple_repeat 2 52 0 810 217 20 0 chr4 150489343 150489495 -33799167 + MER58B DNA MER1_type 186 340 -1 193 233 23 0 chr4 150490242 150490285 -33798377 - L2 LINE L2 -91 3181 3138 825 255 58 10 chr4 150490498 150490706 -33797956 - MIR SINE MIR -11 251 34 1867 124 3 7 chr4 150492325 150492607 -33796055 - AluSx SINE Alu -5 307 27 1737 148 3 20 chr4 150493259 150493562 -33795100 - AluSx SINE Alu 0 312 15 1809 146 0 20 chr4 150493619 150493920 -33794742 - AluJb SINE Alu -16 296 2 756 135 0 9 chr4 150494210 150494321 -33794341 + FLAM_C SINE Alu 2 111 -32 1636 229 81 34 chr4 150494562 150495169 -33793493 + L1ME3 LINE L1 5332 5962 -208 356 201 88 82 chr4 150495228 150495422 -33793240 + L1ME3 LINE L1 5967 6161 -1 207 0 0 0 chr4 150497308 150497331 -33791331 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 29 28 0 0 chr4 150498609 150498645 -33790017 + GC_rich Low_complexity Low_complexity 1 36 0 2324 90 0 13 chr4 150500697 150500997 -33787665 - AluSx SINE Alu -16 296 1 24 0 0 0 chr4 150502010 150502034 -33786628 + AT_rich Low_complexity Low_complexity 1 24 0 1240 153 58 8 chr4 150502686 150502928 -33785734 + MIR SINE MIR 9 262 0 601 195 152 38 chr4 150503673 150503883 -33784779 - HsTC2 DNA Tc2 -27 1871 1638 716 263 115 8 chr4 150503899 150504142 -33784520 - HsTC2 DNA Tc2 -1625 273 5 1608 141 25 11 chr4 150504614 150504898 -33783764 + L1MB8 LINE L1 5891 6178 0 1230 166 148 65 chr4 150505659 150505996 -33782666 - MER47A DNA MER2_type 0 366 2 918 153 153 0 chr4 150506035 150506224 -33782438 - MSTB LTR MaLR 0 426 209 5557 173 43 4 chr4 150506224 150507209 -33781453 - MSTB1-int LTR MaLR -628 1023 1 1291 106 97 9 chr4 150507211 150507438 -33781224 - MSTB1 LTR MaLR -4 428 182 554 238 146 6 chr4 150507490 150507688 -33780974 - MSTB LTR MaLR -185 243 20 244 194 29 50 chr4 150507769 150507908 -33780754 + (GTGTG)n Simple_repeat Simple_repeat 2 137 0 1938 154 43 3 chr4 150510841 150511165 -33777497 - MER1B DNA MER1_type 0 337 1 1313 220 85 43 chr4 150511287 150511733 -33776929 - MLT1C LTR MaLR -2 465 1 2240 91 0 20 chr4 150512096 150512428 -33776234 - AluSc SINE Alu 0 309 1 453 294 76 5 chr4 150512640 150512824 -33775838 - MIR SINE MIR -65 197 1 796 214 13 6 chr4 150513360 150513519 -33775143 + AluJb SINE Alu 143 302 -10 1291 183 5 0 chr4 150513519 150513732 -33774930 + MLT1A1 LTR MaLR 152 365 0 2164 100 3 13 chr4 150513944 150514244 -33774418 + AluSx SINE Alu 15 311 -1 1252 118 0 0 chr4 150514244 150514405 -33774257 + AluSg/x SINE Alu 134 294 -18 39 22 0 0 chr4 150514406 150514452 -33774210 + AT_rich Low_complexity Low_complexity 1 46 0 438 306 16 32 chr4 150514969 150515155 -33773507 + MER5A DNA MER1_type 7 189 0 432 203 0 0 chr4 150515172 150515251 -33773411 - MIR SINE MIR -63 145 67 298 203 43 0 chr4 150516415 150516484 -33772178 - MIR SINE MIR -112 150 79 207 246 18 0 chr4 150516644 150516701 -33771961 + MIR SINE MIR 43 100 -108 202 322 0 0 chr4 150516703 150516762 -33771900 + L3 LINE CR1 1518 1576 -1 2134 117 3 7 chr4 150516877 150517176 -33771486 - AluSx SINE Alu -14 298 1 530 287 72 65 chr4 150517330 150517504 -33771158 + MLT1J LTR MaLR 231 409 -102 1418 171 38 82 chr4 150517504 150517820 -33770842 - AluJb SINE Alu -10 302 1 530 287 72 65 chr4 150517820 150517924 -33770738 + MLT1J LTR MaLR 409 511 0 267 366 60 13 chr4 150517942 150518177 -33770485 + L2 LINE L2 2239 2484 -830 230 310 95 27 chr4 150518198 150518541 -33770121 - L2 LINE L2 -1 3312 2870 201 302 12 12 chr4 150518665 150518751 -33769911 + CT-rich Low_complexity Low_complexity 3 88 0 303 269 21 0 chr4 150519974 150520067 -33768595 - L1ME4a LINE L1 -17 6104 6010 227 114 23 0 chr4 150520241 150520285 -33768377 + (CCCA)n Simple_repeat Simple_repeat 2 46 0 317 289 61 77 chr4 150520415 150520727 -33767935 + MLT1K LTR MaLR 278 584 -4 291 54 0 0 chr4 150520798 150520835 -33767827 + (TG)n Simple_repeat Simple_repeat 2 38 0 189 0 0 0 chr4 150520834 150520855 -33767807 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 191 244 209 12 chr4 150522305 150522391 -33766271 - L2 LINE L2 -21 3251 3149 2529 226 59 5 chr4 150522661 150523223 -33765439 + MLT1G1 LTR MaLR 4 595 0 842 280 14 17 chr4 150523867 150524160 -33764502 + AluJb SINE Alu 21 312 0 766 241 96 27 chr4 150524244 150524505 -33764157 - L1MC4 LINE L1 -1305 6737 6459 405 260 78 86 chr4 150525155 150525424 -33763238 + HAL1 LINE L1 39 305 -2202 309 227 206 0 chr4 150525456 150525553 -33763109 + HAL1 LINE L1 821 937 -1570 414 303 119 23 chr4 150525570 150525880 -33762782 + HAL1 LINE L1 2166 2505 -2 239 263 101 10 chr4 150525977 150526076 -33762586 + MIR SINE MIR 47 154 -108 2063 166 26 16 chr4 150526086 150526472 -33762190 - MLT1B LTR MaLR 0 390 1 190 258 45 0 chr4 150526484 150526550 -33762112 - L2 LINE L2 0 3272 3204 425 291 57 6 chr4 150526753 150526928 -33761734 - MIR SINE MIR 0 262 79 300 313 15 52 chr4 150527102 150527236 -33761426 - L1ME3A LINE L1 -77 6093 5965 243 0 0 0 chr4 150527257 150527284 -33761378 + (CA)n Simple_repeat Simple_repeat 2 28 0 2423 87 0 0 chr4 150528077 150528376 -33760286 + AluSc SINE Alu 1 299 -10 1011 343 57 50 chr4 150528705 150528809 -33759853 - HERV16 LTR ERVL -3718 1278 1176 1735 165 7 36 chr4 150528809 150529112 -33759550 + AluJb SINE Alu 1 294 -18 1011 343 57 50 chr4 150529112 150529772 -33758890 - HERV16 LTR ERVL -3820 1176 523 1623 176 3 25 chr4 150529772 150530056 -33758606 + AluJb SINE Alu 1 278 -34 1034 61 49 0 chr4 150530057 150530221 -33758441 + GA-rich Low_complexity Low_complexity 2 173 0 1011 343 57 50 chr4 150530221 150530363 -33758299 - HERV16 LTR ERVL -4472 524 362 188 298 18 0 chr4 150530713 150530770 -33757892 - MIR SINE MIR -59 149 92 198 0 0 0 chr4 150531375 150531397 -33757265 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 933 98 49 0 chr4 150531397 150531519 -33757143 - AluSq/x SINE Alu -183 130 3 1504 165 75 7 chr4 150531522 150531801 -33756861 - L1PA16 LINE L1 -8 6158 5861 1087 270 56 66 chr4 150532106 150532368 -33756294 - LTR33 LTR ERVL -6 515 259 2572 143 59 15 chr4 150532368 150532843 -33755819 + L1MB4 LINE L1 5685 6180 0 1087 270 56 66 chr4 150532843 150533098 -33755564 - LTR33 LTR ERVL -262 259 3 490 291 35 0 chr4 150533299 150533440 -33755222 + L1ME4a LINE L1 5606 5751 -370 269 270 124 0 chr4 150533511 150533648 -33755014 + L1ME4a LINE L1 5966 6119 -2 2135 109 3 3 chr4 150534725 150535010 -33753652 - AluSc SINE Alu -24 285 1 229 284 0 2 chr4 150535191 150535261 -33753401 - MER5B DNA MER1_type -53 136 59 2510 77 0 0 chr4 150535913 150536224 -33752438 - AluY SINE Alu 0 311 1 1485 164 260 26 chr4 150536298 150536935 -33751727 + SATR1 Satellite Satellite 1 785 -1 1377 181 213 25 chr4 150536958 150537466 -33751196 + SATR1 Satellite Satellite 1 603 -95 204 40 0 0 chr4 150538614 150538639 -33750023 + (T)n Simple_repeat Simple_repeat 1 25 0 25 0 0 0 chr4 150538817 150538842 -33749820 + GC_rich Low_complexity Low_complexity 1 25 0 243 172 35 35 chr4 150539059 150539117 -33749545 - MER52A LTR ERV1 -1697 58 1 1493 177 75 0 chr4 150539215 150539481 -33749181 - AluJo SINE Alu -22 290 5 960 172 65 0 chr4 150539508 150539677 -33748985 - AluJb SINE Alu 0 312 133 220 295 62 19 chr4 150540143 150540273 -33748389 - MIR SINE MIR -66 142 2 23 0 0 0 chr4 150540423 150540446 -33748216 + AT_rich Low_complexity Low_complexity 1 23 0 2268 114 3 0 chr4 150540451 150540758 -33747904 + AluSp SINE Alu 1 308 -5 2115 122 0 3 chr4 150541056 150541373 -33747289 + AluSx SINE Alu 1 312 0 21 36 0 0 chr4 150541662 150541690 -33746972 + AT_rich Low_complexity Low_complexity 1 28 0 278 262 16 66 chr4 150541849 150541971 -33746691 - L2 LINE L2 -4 3268 3153 2233 103 3 7 chr4 150542038 150542338 -33746324 + AluSq SINE Alu 1 299 -14 2199 128 0 0 chr4 150542491 150542788 -33745874 + AluJb SINE Alu 1 297 -15 426 39 0 0 chr4 150543452 150543504 -33745158 + (TG)n Simple_repeat Simple_repeat 1 52 0 2178 98 11 0 chr4 150543504 150543780 -33744882 - AluSx SINE Alu -33 279 1 244 220 221 0 chr4 150543881 150544030 -33744632 - L1MC4 LINE L1 -2 8040 7777 1756 150 8 0 chr4 150544040 150544306 -33744356 + AluSx SINE Alu 1 268 -44 570 124 0 0 chr4 150544306 150544395 -33744267 + AluSg/x SINE Alu 216 304 -5 710 248 102 0 chr4 150544446 150544672 -33743990 - L1MC4 LINE L1 -264 7778 7530 202 290 159 7 chr4 150544912 150545057 -33743605 - L2 LINE L2 -446 2868 2702 342 330 93 66 chr4 150545205 150545657 -33743005 - MLT1K LTR MaLR -110 478 15 1087 145 13 0 chr4 150545840 150545999 -33742663 - AluSg/x SINE Alu -16 296 136 765 118 0 31 chr4 150546502 150546629 -33742033 - FLAM_C SINE Alu -2 141 19 421 291 80 73 chr4 150546747 150547052 -33741610 - L1M4 LINE L1 -1094 5052 4741 1629 69 60 5 chr4 150547052 150547270 -33741392 + MER30 DNA MER1_type 1 230 0 421 291 80 73 chr4 150547270 150547428 -33741234 - L1M4 LINE L1 -1405 4741 4586 2235 106 0 0 chr4 150547809 150548117 -33740545 + AluSx SINE Alu 1 308 0 203 156 0 0 chr4 150548547 150548579 -33740083 + (ATG)n Simple_repeat Simple_repeat 2 33 0 196 319 106 50 chr4 150548589 150548730 -33739932 - MIR SINE MIR -54 208 60 205 96 58 19 chr4 150548861 150548913 -33739749 + (TTG)n Simple_repeat Simple_repeat 2 55 0 782 192 0 0 chr4 150548928 150549058 -33739604 + FLAM_C SINE Alu 1 130 -3 2029 139 10 3 chr4 150549069 150549371 -33739291 + AluSx SINE Alu 1 304 -8 186 263 0 0 chr4 150549753 150549810 -33738852 + (TG)n Simple_repeat Simple_repeat 2 58 0 2211 89 20 0 chr4 150550310 150550603 -33738059 + AluY SINE Alu 1 299 -12 2585 125 54 58 chr4 150550631 150551151 -33737511 - L1MC2 LINE L1 0 6344 5827 286 299 130 0 chr4 150551168 150551245 -33737417 - L2 LINE L2 -17 3296 3210 1614 175 28 7 chr4 150551509 150551676 -33736986 - AluJo SINE Alu -15 297 120 198 0 0 0 chr4 150551676 150551698 -33736964 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1614 175 28 7 chr4 150551698 150551821 -33736841 - AluJo SINE Alu -192 120 1 695 139 20 20 chr4 150553381 150553532 -33735130 - MER96B DNA MER1_type? -182 235 85 265 240 40 0 chr4 150553604 150553679 -33734983 + L1MC4 LINE L1 7594 7671 -371 414 200 0 12 chr4 150553690 150553775 -33734887 - MER96B DNA MER1_type? -333 84 1 302 208 28 0 chr4 150554503 150554575 -33734087 - L1ME2 LINE L1 -192 5972 5899 456 293 132 22 chr4 150554611 150555020 -33733642 + L1MC4 LINE L1 7588 8041 -1 301 220 11 22 chr4 150555180 150555271 -33733391 + L1ME1 LINE L1 4930 5019 -1127 1168 143 0 5 chr4 150555272 150555461 -33733201 + AluSg/x SINE Alu 119 306 -6 570 206 7 15 chr4 150555462 150555598 -33733064 + L1ME1 LINE L1 5027 5161 -985 * 1542 234 45 41 chr4 150555595 150556078 -33732584 + L1ME1 LINE L1 5414 5898 -268 736 295 60 9 chr4 150556153 150556431 -33732231 - L1MC4 LINE L1 -567 7475 7176 234 0 0 0 chr4 150556431 150556457 -33732205 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 736 295 60 9 chr4 150556457 150556510 -33732152 - L1MC4 LINE L1 -866 7176 7127 438 260 103 34 chr4 150556717 150556863 -33731799 - L2 LINE L2 0 3313 3158 1800 151 16 19 chr4 150556872 150557184 -33731478 + AluJb SINE Alu 1 311 -1 2036 163 40 32 chr4 150558532 150559068 -33729594 + MLT2A2 LTR ERVL 1 544 -10 2218 118 0 0 chr4 150559128 150559424 -33729238 + AluSx SINE Alu 1 296 -16 304 341 63 6 chr4 150559969 150560286 -33728376 - L2 LINE L2 -1000 2314 1980 2910 131 4 0 chr4 150560391 150560842 -33727820 - L1PA15 LINE L1 -1 6164 5712 2256 104 3 0 chr4 150561959 150562257 -33726405 - AluSx SINE Alu -13 299 1 216 0 0 0 chr4 150562345 150562369 -33726293 + (T)n Simple_repeat Simple_repeat 1 24 0 441 173 0 12 chr4 150562439 150562520 -33726142 + MIR SINE MIR 106 185 -77 512 243 141 28 chr4 150562731 150562908 -33725754 - L2 LINE L2 -1 3312 3116 413 252 6 88 chr4 150563438 150563566 -33725096 - MER112 DNA MER1_type -1 259 145 2042 140 10 0 chr4 150563566 150563866 -33724796 + AluSx SINE Alu 1 303 -9 413 252 6 88 chr4 150563866 150563896 -33724766 - MER112 DNA MER1_type -115 145 114 192 77 0 0 chr4 150564653 150564679 -33723983 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 314 272 62 37 chr4 150565406 150565568 -33723094 + MIR SINE MIR 64 229 -33 2201 127 0 0 chr4 150565829 150566137 -33722525 - AluSx SINE Alu -4 308 1 2345 103 3 0 chr4 150566479 150566790 -33721872 + AluSp SINE Alu 1 312 -1 258 32 0 0 chr4 150566790 150566821 -33721841 + (TA)n Simple_repeat Simple_repeat 1 31 0 930 130 93 0 chr4 150566822 150566983 -33721679 + AluSg/x SINE Alu 125 300 -10 254 254 0 0 chr4 150567115 150567170 -33721492 - MIR SINE MIR -60 148 94 201 108 0 0 chr4 150567375 150567412 -33721250 + (A)n Simple_repeat Simple_repeat 1 37 0 189 0 0 0 chr4 150568788 150568809 -33719853 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 348 280 85 26 chr4 150570115 150570304 -33718358 + L3b LINE CR1 1112 1311 -272 628 361 51 9 chr4 150571425 150571757 -33716905 + L2 LINE L2 2362 2707 -607 1092 182 3 87 chr4 150571766 150572052 -33716610 + L1MC5 LINE L1 6698 6959 -1002 740 209 15 29 chr4 150572193 150572399 -33716263 + L1M4 LINE L1 4457 4659 -1487 22 35 0 0 chr4 150572773 150572802 -33715860 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr4 150573077 150573098 -33715564 + (CA)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr4 150573954 150573976 -33714686 + AT_rich Low_complexity Low_complexity 1 22 0 426 85 0 0 chr4 150574112 150574171 -33714491 + (TG)n Simple_repeat Simple_repeat 2 60 0 22 35 0 0 chr4 150574171 150574200 -33714462 + AT_rich Low_complexity Low_complexity 1 29 0 1340 203 3 40 chr4 150574249 150574549 -33714113 - AluJo SINE Alu -21 291 3 447 305 37 42 chr4 150574798 150574988 -33713674 + MIR SINE MIR 72 260 -2 6138 91 39 3 chr4 150575784 150576726 -33711936 + L1PA14 LINE L1 5189 6159 -2 659 239 130 35 chr4 150577732 150577962 -33710700 + MIR SINE MIR 5 256 -6 326 252 207 7 chr4 150578100 150578235 -33710427 - L2 LINE L2 -8 3305 3144 783 228 66 44 chr4 150579094 150579322 -33709340 + MIR SINE MIR 4 236 -26 613 203 75 75 chr4 150579335 150579522 -33709140 + MER20 DNA MER1_type 31 217 -2 1474 77 0 10 chr4 150580031 150580226 -33708436 + AluSg/x SINE Alu 115 307 -3 445 188 174 7 chr4 150580394 150580532 -33708130 + MER105 DNA DNA 20 180 -24 205 250 0 44 chr4 150580560 150580628 -33708034 + (TATG)n Simple_repeat Simple_repeat 4 68 0 439 335 94 44 chr4 150580628 150580968 -33707694 + L2 LINE L2 2916 3272 0 310 255 85 11 chr4 150581021 150581115 -33707547 + L2 LINE L2 3168 3268 -4 2497 30 13 0 chr4 150581576 150581880 -33706782 - AluYb8 SINE Alu -10 308 1 553 311 91 29 chr4 150581984 150582225 -33706437 - MIR SINE MIR -1 261 6 2294 85 0 0 chr4 150582697 150583015 -33705647 - AluY SINE Alu 0 318 1 24 0 0 0 chr4 150583064 150583088 -33705574 + AT_rich Low_complexity Low_complexity 1 24 0 1535 206 3 7 chr4 150583435 150583721 -33704941 + AluJo SINE Alu 1 285 -27 2180 123 0 0 chr4 150583743 150584044 -33704618 + AluSx SINE Alu 1 301 -11 965 257 31 12 chr4 150584260 150584517 -33704145 - MIR SINE MIR 0 262 1 229 229 0 0 chr4 150584554 150584602 -33704060 + MIR SINE MIR 212 259 -3 1989 138 10 0 chr4 150584908 150585204 -33703458 + AluJb SINE Alu 1 299 -13 23 0 0 0 chr4 150585286 150585309 -33703353 + AT_rich Low_complexity Low_complexity 1 23 0 1677 126 71 39 chr4 150585506 150585816 -33702846 - MER1B DNA MER1_type -1 338 19 1211 196 76 33 chr4 150585818 150586119 -33702543 - MLT1E3 LTR MaLR -16 608 295 257 257 27 0 chr4 150586167 150586241 -33702421 - HsTC2 DNA Tc2 -32 1866 1791 750 301 37 13 chr4 150586268 150586567 -33702095 - HsTC2 DNA Tc2 -1508 390 85 445 250 15 44 chr4 150586634 150586770 -33701892 - L1ME1 LINE L1 -112 6054 5923 21 0 0 0 chr4 150586804 150586825 -33701837 + AT_rich Low_complexity Low_complexity 1 21 0 2087 174 56 14 chr4 150587145 150587559 -33701103 - MSTB1 LTR MaLR -1 431 1 1240 163 67 32 chr4 150587835 150588148 -33700514 - MER33 DNA MER1_type 0 324 1 283 139 3 31 chr4 150588757 150588821 -33699841 - L1MB7 LINE L1 0 6167 6111 2073 170 33 21 chr4 150588827 150588872 -33699790 - L1MB7 LINE L1 -27 6157 6114 2114 96 11 4 chr4 150588872 150589174 -33699488 + AluSq SINE Alu 1 304 0 2073 170 33 21 chr4 150589174 150589556 -33699106 - L1MB7 LINE L1 -70 6114 5724 1039 278 53 8 chr4 150590200 150590556 -33698106 - L1MC4a LINE L1 -1844 5964 5593 197 281 18 0 chr4 150590640 150590697 -33697965 - MIR SINE MIR -123 139 82 602 100 8 83 chr4 150590872 150590992 -33697670 + FLAM_C SINE Alu 27 137 -6 392 141 78 0 chr4 150591000 150591064 -33697598 + FRAM SINE Alu 73 141 -25 369 285 69 19 chr4 150591563 150591752 -33696910 + L1MC/D LINE L1 5467 5664 -582 369 147 0 15 chr4 150591870 150591938 -33696724 - L1MB7 LINE L1 -366 5755 5689 280 267 23 47 chr4 150592032 150592118 -33696544 + MIR SINE MIR 36 119 -89 2765 210 47 119 chr4 150592655 150593375 -33695287 - L1MC4a LINE L1 -17 7791 7021 1509 155 20 8 chr4 150593375 150593620 -33695042 - AluJb SINE Alu -64 248 1 2765 210 47 119 chr4 150593620 150593944 -33694718 - L1MC4a LINE L1 -787 7021 6837 1754 159 0 57 chr4 150593944 150594259 -33694403 - AluJo SINE Alu -13 299 3 2765 210 47 119 chr4 150594259 150594384 -33694278 - L1MC4a LINE L1 -971 6837 6705 568 159 223 19 chr4 150595158 150595315 -33693347 + MER5A DNA MER1_type 1 189 0 5445 159 97 13 chr4 150595445 150595600 -33693062 + Tigger3b DNA MER2_type 58 199 -2829 2419 69 0 0 chr4 150595600 150595890 -33692772 + AluY SINE Alu 1 290 -21 5445 159 97 13 chr4 150595890 150596024 -33692638 + Tigger3b DNA MER2_type 199 320 -2708 1806 144 4 0 chr4 150596024 150596287 -33692375 + AluSx SINE Alu 35 298 -14 5445 159 97 13 chr4 150596287 150597079 -33691583 + Tigger3b DNA MER2_type 320 1231 0 8930 192 70 45 chr4 150597079 150598459 -33690203 - Charlie5 DNA MER1_type -19 2605 1130 2130 96 10 7 chr4 150598459 150598751 -33689911 + AluSx SINE Alu 1 293 -19 8930 192 70 45 chr4 150598751 150599903 -33688759 - Charlie5 DNA MER1_type -1494 1130 9 426 257 14 29 chr4 150600832 150600972 -33687690 - MER103 DNA DNA -15 151 14 216 0 0 0 chr4 150601510 150601534 -33687128 + (T)n Simple_repeat Simple_repeat 1 24 0 694 316 120 50 chr4 150601546 150602213 -33686449 + ERVL LTR ERVL 1013 1726 -4038 564 137 26 86 chr4 150602250 150602367 -33686295 + AluJb SINE Alu 75 184 -128 776 300 113 38 chr4 150602646 150603069 -33685593 + LTR67 LTR ERVL 100 554 -3 193 330 78 9 chr4 150603384 150603499 -33685163 + L2 LINE L2 3159 3281 -32 516 284 110 27 chr4 150604202 150604616 -33684046 - L1MC/D LINE L1 -505 5659 5258 297 0 0 0 chr4 150604654 150604687 -33683975 + (TG)n Simple_repeat Simple_repeat 1 33 0 2209 106 3 0 chr4 150604688 150604990 -33683672 - AluSx SINE Alu -9 303 1 309 357 117 19 chr4 150605036 150605302 -33683360 - L1MC/D LINE L1 -1310 4836 4545 1699 119 130 0 chr4 150605344 150605621 -33683041 - AluSq SINE Alu 0 313 1 239 300 50 22 chr4 150605780 150605835 -33682827 - L1MC/D LINE L1 -1820 4326 4274 1664 199 0 7 chr4 150605835 150606136 -33682526 - AluJo SINE Alu -13 299 1 239 300 50 22 chr4 150606136 150606260 -33682402 - L1MC/D LINE L1 -1872 4274 4142 21 0 0 0 chr4 150606475 150606496 -33682166 + AT_rich Low_complexity Low_complexity 1 21 0 1987 134 3 26 chr4 150606574 150606880 -33681782 - AluSx SINE Alu -13 299 1 376 264 64 16 chr4 150607090 150607215 -33681447 + MIR SINE MIR 90 220 -42 342 367 31 10 chr4 150607233 150607429 -33681233 + L2 LINE L2 569 768 -2546 521 357 189 22 chr4 150607448 150608177 -33680485 + L2 LINE L2 1098 1704 -1610 1555 177 97 0 chr4 150608177 150608527 -33680135 - MLT1B LTR MaLR -4 386 3 521 357 189 22 chr4 150608527 150608566 -33680096 + L2 LINE L2 1704 1735 -1579 2230 117 0 0 chr4 150608566 150608875 -33679787 + AluSx SINE Alu 1 309 -3 521 357 189 22 chr4 150608875 150609200 -33679462 + L2 LINE L2 1735 2375 -939 2294 208 84 39 chr4 150609389 150610111 -33678551 + L1ME2 LINE L1 5381 6135 -29 285 239 46 31 chr4 150610174 150610304 -33678358 + L1MC5 LINE L1 7782 7913 -48 499 268 151 0 chr4 150611426 150611605 -33677057 + MIR SINE MIR 36 241 -21 1696 155 30 6 chr4 150611672 150612007 -33676655 - L1MB4 LINE L1 0 6180 5838 260 237 86 21 chr4 150612038 150612131 -33676531 + L1ME LINE L1 5640 5738 -426 27 0 0 0 chr4 150614364 150614391 -33674271 + AT_rich Low_complexity Low_complexity 1 27 0 1188 234 103 11 chr4 150614658 150615017 -33673645 - L1MC4 LINE L1 -642 7400 7009 6322 131 77 15 chr4 150615023 150616149 -33672513 + Tigger3b DNA MER2_type 36 1231 0 1017 243 69 17 chr4 150616156 150616444 -33672218 - L1MC4 LINE L1 -1041 7001 6699 377 307 102 35 chr4 150616455 150616738 -33671924 - L1MC4a LINE L1 -1229 6579 6278 2299 102 0 0 chr4 150617052 150617347 -33671315 - AluSx SINE Alu -13 299 5 21 0 0 0 chr4 150617403 150617424 -33671238 + AT_rich Low_complexity Low_complexity 1 21 0 413 286 96 75 chr4 150617836 150618220 -33670442 + L1MC4a LINE L1 4399 4790 -1356 1885 154 20 0 chr4 150618303 150618609 -33670053 - AluJb SINE Alu 0 312 1 313 213 120 109 chr4 150618866 150619049 -33669613 + L1MC4a LINE L1 5664 5848 -1960 757 288 191 29 chr4 150619143 150619593 -33669069 + L1MC4a LINE L1 6418 6793 -1015 14079 141 24 11 chr4 150619593 150621979 -33666683 - Tigger1 DNA MER2_type 0 2418 2 757 288 191 29 chr4 150621979 150622364 -33666298 + L1MC4a LINE L1 6793 7389 -419 274 328 27 35 chr4 150622378 150622635 -33666027 + L1MC4 LINE L1 7317 7674 -368 4192 181 46 6 chr4 150623115 150623957 -33664705 + L1MB4 LINE L1 5292 6167 -13 1353 238 21 66 chr4 150624795 150625279 -33663383 - LTR40b LTR ERVL 0 462 1 3541 240 78 13 chr4 150625363 150626571 -33662091 - L1M4 LINE L1 -793 5353 4068 1383 202 52 0 chr4 150626571 150626871 -33661791 - AluJo SINE Alu 0 314 1 897 163 7 0 chr4 150626919 150627066 -33661596 - AluSg/x SINE Alu -20 290 143 2192 99 7 0 chr4 150627067 150627350 -33661312 + AluSc SINE Alu 2 286 -23 434 286 60 16 chr4 150627873 150628055 -33660607 + MER110-int LTR ERV1 4307 4496 -151 1133 174 20 15 chr4 150628331 150628526 -33660136 + AluJo SINE Alu 86 281 -31 1114 154 23 23 chr4 150628767 150628988 -33659674 - AluJb SINE Alu -7 305 85 1582 238 84 44 chr4 150629254 150630099 -33658563 - L1ME3A LINE L1 -19 6151 5191 1892 152 0 10 chr4 150630112 150630408 -33658254 - AluJo SINE Alu -14 298 6 890 171 4 8 chr4 150630413 150630658 -33658004 + CT-rich Low_complexity Low_complexity 1 244 0 27 0 0 0 chr4 150630786 150630813 -33657849 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr4 150631458 150631479 -33657183 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 150632016 150632040 -33656622 + AT_rich Low_complexity Low_complexity 1 24 0 27 29 0 0 chr4 150632176 150632210 -33656452 + AT_rich Low_complexity Low_complexity 1 34 0 3216 193 108 13 chr4 150633276 150634253 -33654409 - L1MB7 LINE L1 -7 6177 5096 2335 115 36 11 chr4 150634561 150634925 -33653737 - THE1C LTR MaLR -2 373 1 2265 77 0 0 chr4 150635084 150635369 -33653293 - AluY SINE Alu -26 285 1 2258 95 3 0 chr4 150635460 150635756 -33652906 - AluSx SINE Alu -15 297 1 2323 95 3 0 chr4 150636163 150636467 -33652195 - AluSx SINE Alu -7 305 1 207 293 17 0 chr4 150638375 150638433 -33650229 + L2 LINE L2 3213 3271 -1 2086 114 3 13 chr4 150638725 150639024 -33649638 - AluSx SINE Alu -16 296 1 22 0 0 0 chr4 150639090 150639112 -33649550 + AT_rich Low_complexity Low_complexity 1 22 0 260 229 25 74 chr4 150639275 150639397 -33649265 + L1ME LINE L1 46 161 -5909 311 283 44 22 chr4 150639462 150639628 -33649034 + L1ME LINE L1 289 462 -5608 644 287 34 64 chr4 150639743 150639997 -33648665 + L1ME LINE L1 275 366 -5616 1067 176 29 5 chr4 150639997 150640202 -33648460 - MER6B DNA MER2_type 0 210 1 644 287 34 64 chr4 150640202 150640513 -33648149 + L1ME LINE L1 366 685 -5297 390 231 13 0 chr4 150640513 150640591 -33648071 - MER2 DNA MER2_type 0 345 267 786 273 169 29 chr4 150640626 150640751 -33647911 + L1ME LINE L1 773 879 -5382 201 39 0 0 chr4 150640751 150640777 -33647885 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1597 112 128 16 chr4 150640782 150641031 -33647631 - AluSx SINE Alu -35 277 1 786 273 169 29 chr4 150641031 150641724 -33646938 + L1ME LINE L1 882 1771 -4490 1162 180 82 0 chr4 150641879 150642112 -33646550 - L1MB4 LINE L1 -8 6172 5921 1732 149 76 3 chr4 150642113 150642428 -33646234 + MER44D DNA MER2_type 2 609 0 2059 79 7 43 chr4 150643711 150644037 -33644625 + AluSg SINE Alu 1 310 0 2495 62 0 7 chr4 150644361 150644669 -33643993 - AluY SINE Alu -5 306 1 2123 255 57 41 chr4 150644684 150645481 -33643181 - L1ME1 LINE L1 -49 6117 5309 1424 170 6 80 chr4 150645482 150645794 -33642868 - AluJo SINE Alu -18 294 6 533 210 84 9 chr4 150645797 150646011 -33642651 - L1ME1 LINE L1 -823 5323 5094 1313 202 50 7 chr4 150646011 150646288 -33642374 + MLT1D LTR MaLR 3 291 -214 323 140 53 0 chr4 150646291 150646348 -33642314 + MLT1D LTR MaLR 429 488 -17 1817 204 10 12 chr4 150646355 150646756 -33641906 + MLT1D-int LTR MaLR 1 400 -971 31 0 0 0 chr4 150646865 150646896 -33641766 + AT_rich Low_complexity Low_complexity 1 31 0 442 293 67 67 chr4 150647642 150648191 -33640471 + L1MC5 LINE L1 7348 7896 -65 25 65 0 0 chr4 150648191 150648237 -33640425 + AT_rich Low_complexity Low_complexity 1 46 0 302 304 65 42 chr4 150648383 150648600 -33640062 + L2 LINE L2 3092 3313 0 2206 87 10 7 chr4 150648830 150649130 -33639532 - AluSx SINE Alu -11 301 1 883 194 59 40 chr4 150649702 150650127 -33638535 - Charlie1b DNA MER1_type -1 522 1 1474 143 32 46 chr4 150650225 150650505 -33638157 - AluJb SINE Alu -8 304 29 22 35 0 0 chr4 150653172 150653201 -33635461 + AT_rich Low_complexity Low_complexity 1 29 0 181 327 48 29 chr4 150655227 150655331 -33633331 - L2 LINE L2 -1435 1879 1774 220 329 37 24 chr4 150655426 150655508 -33633154 + MIR SINE MIR 21 103 -105 494 258 59 48 chr4 150656039 150656090 -33632572 - MIR SINE MIR -12 250 201 2167 131 0 6 chr4 150656090 150656404 -33632258 - AluSx SINE Alu 0 312 1 494 258 59 48 chr4 150656404 150656538 -33632124 - MIR SINE MIR -61 201 63 720 191 172 0 chr4 150656543 150656700 -33631962 + MER46A DNA MER2_type 53 236 0 1491 185 45 24 chr4 150656904 150657191 -33631471 + AluJb SINE Alu 1 293 -19 258 331 97 29 chr4 150657191 150657356 -33631306 + MER5A DNA MER1_type 10 189 0 755 241 42 109 chr4 150657464 150657853 -33630809 + L1ME4a LINE L1 5536 5874 -247 451 175 0 0 chr4 150657853 150657933 -33630729 - MER116 DNA Mariner 0 80 1 755 241 42 109 chr4 150657933 150658132 -33630530 + L1ME4a LINE L1 5874 6085 -36 2359 85 3 0 chr4 150658743 150659049 -33629613 - AluSp SINE Alu -6 307 1 259 332 116 21 chr4 150659053 150659243 -33629419 - MIR SINE MIR -52 210 3 255 315 42 108 chr4 150659419 150659679 -33628983 - L2 LINE L2 -18 3254 3012 220 156 13 143 chr4 150659701 150659778 -33628884 + MER5A DNA MER1_type 121 187 -2 2313 71 3 7 chr4 150662143 150662439 -33626223 - AluY SINE Alu -9 302 8 2043 137 10 0 chr4 150663342 150663634 -33625028 - AluSx SINE Alu -17 295 1 12375 122 79 75 chr4 150663651 150663844 -33624818 - Tigger1 DNA MER2_type -5 2413 2222 2125 113 10 0 chr4 150663844 150664137 -33624525 - AluSx SINE Alu -16 296 1 12375 122 79 75 chr4 150664137 150664637 -33624025 - Tigger1 DNA MER2_type -196 2222 1726 936 83 0 30 chr4 150664637 150664769 -33623893 - AluSg/x SINE Alu -16 296 169 12375 122 79 75 chr4 150664769 150666346 -33622316 - Tigger1 DNA MER2_type -692 1726 1 1085 161 16 5 chr4 150666348 150666540 -33622122 + Charlie6 DNA MER1_type 3307 3500 0 655 244 74 26 chr4 150666540 150666769 -33621893 + L1MC4 LINE L1 7372 7611 -431 380 282 27 20 chr4 150666770 150666919 -33621743 + L1MC4 LINE L1 7718 7867 -175 351 0 0 0 chr4 150666925 150666964 -33621698 + (TCCCC)n Simple_repeat Simple_repeat 1 39 0 810 204 73 102 chr4 150667850 150668095 -33620567 + MER8 DNA MER2_type 2 239 0 2570 202 85 61 chr4 150668505 150669207 -33619455 + L1ME2 LINE L1 5337 6062 -102 2016 128 0 17 chr4 150669207 150669505 -33619157 - AluSx SINE Alu -19 293 1 2570 202 85 61 chr4 150669505 150669603 -33619059 + L1ME2 LINE L1 6062 6156 -8 1274 162 185 23 chr4 150670380 150670807 -33617855 + LTR54B LTR ERV1 1 496 -2 184 277 64 0 chr4 150671100 150671147 -33617515 - L2 LINE L2 -50 3222 3173 222 37 0 0 chr4 150672036 150672063 -33616599 + (CAA)n Simple_repeat Simple_repeat 1 27 0 393 296 143 13 chr4 150672203 150672433 -33616229 - MIR SINE MIR -2 260 1 2263 92 0 0 chr4 150672826 150673109 -33615553 - AluSp SINE Alu -17 296 14 316 250 148 23 chr4 150673327 150673455 -33615207 - MIR SINE MIR -7 255 112 518 249 122 11 chr4 150674054 150674243 -33614419 + Charlie1 DNA MER1_type 5 214 -2547 * 729 175 7 14 chr4 150674239 150674382 -33614280 + Charlie1 DNA MER1_type 2619 2760 -1 407 297 35 7 chr4 150674424 150674569 -33614093 - MIR3 SINE MIR -27 181 33 304 297 25 42 chr4 150674586 150674704 -33613958 + MIR SINE MIR 140 255 -7 545 288 203 15 chr4 150674708 150675038 -33613624 - L3 LINE CR1 -92 1485 1094 1974 89 8 4 chr4 150675417 150675676 -33612986 + AluSg SINE Alu 37 296 -14 319 220 7 78 chr4 150675682 150675823 -33612839 - L1MEd LINE L1 -4933 1186 1056 640 266 88 71 chr4 150675842 150676195 -33612467 - L1MEd LINE L1 -5443 676 318 192 310 133 59 chr4 150676740 150676941 -33611721 - L2 LINE L2 -455 2859 2644 529 273 168 0 chr4 150676941 150677084 -33611578 + MER5A DNA MER1_type 1 167 -22 24 0 0 0 chr4 150677654 150677678 -33610984 + AT_rich Low_complexity Low_complexity 1 24 0 777 155 39 8 chr4 150677863 150677992 -33610670 + FLAM_C SINE Alu 1 133 -10 848 203 49 79 chr4 150678114 150678419 -33610243 - L1ME3A LINE L1 -96 6074 5779 31 44 0 0 chr4 150678578 150678623 -33610039 + AT_rich Low_complexity Low_complexity 1 45 0 939 274 95 20 chr4 150678706 150679147 -33609515 + L1MC5 LINE L1 7059 7532 -429 12710 113 58 78 chr4 150679900 150680477 -33608185 + Tigger1 DNA MER2_type 2 589 -1829 778 168 0 29 chr4 150680477 150680614 -33608048 - FLAM_C SINE Alu -10 133 1 12710 113 58 78 chr4 150680614 150682361 -33606301 + Tigger1 DNA MER2_type 589 2411 -7 5321 190 125 39 chr4 150682368 150682492 -33606170 - Charlie6 DNA MER1_type -197 3303 3191 477 0 0 0 chr4 150682492 150682545 -33606117 + (TG)n Simple_repeat Simple_repeat 2 54 0 5321 190 125 39 chr4 150682545 150683878 -33604784 - Charlie6 DNA MER1_type -309 3191 1699 324 0 0 0 chr4 150683878 150683914 -33604748 + (TG)n Simple_repeat Simple_repeat 1 36 0 5321 190 125 39 chr4 150683914 150684027 -33604635 - Charlie6 DNA MER1_type -1801 1699 1597 300 250 0 0 chr4 150684046 150684106 -33604556 - LTR16B LTR ERVL 0 464 405 250 307 43 29 chr4 150684158 150684298 -33604364 - LTR16B LTR ERVL -301 163 22 192 328 68 55 chr4 150684650 150684961 -33603701 - L2 LINE L2 -830 2484 2170 649 260 122 89 chr4 150685848 150686446 -33602216 - L2 LINE L2 -2 3311 2707 21 0 0 0 chr4 150686483 150686504 -33602158 + AT_rich Low_complexity Low_complexity 1 21 0 2537 217 34 14 chr4 150687546 150688098 -33600564 - MER82 DNA MER2_type -90 563 1 234 307 30 10 chr4 150688165 150688266 -33600396 - MER112 DNA MER1_type -157 103 1 265 373 42 17 chr4 150688466 150688584 -33600078 + MIR SINE MIR 26 146 -62 547 226 67 76 chr4 150689256 150689570 -33599092 - L1ME4a LINE L1 -204 5917 5607 22 0 0 0 chr4 150689578 150689600 -33599062 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr4 150689624 150689655 -33599007 + AT_rich Low_complexity Low_complexity 1 31 0 183 42 0 0 chr4 150690565 150690589 -33598073 + (GGA)n Simple_repeat Simple_repeat 2 25 0 315 219 8 17 chr4 150692230 150692349 -33596313 + (TATG)n Simple_repeat Simple_repeat 2 119 0 22 56 0 0 chr4 150694012 150694048 -33594614 + AT_rich Low_complexity Low_complexity 1 36 0 1447 158 158 0 chr4 150694051 150694305 -33594357 + AluJb SINE Alu 1 294 -18 580 275 96 0 chr4 150694879 150695046 -33593616 + MIR SINE MIR 48 230 -32 531 178 122 0 chr4 150695620 150695727 -33592935 - FLAM_A SINE Alu -13 120 1 228 367 11 0 chr4 150696037 150696127 -33592535 + L2 LINE L2 2228 2318 -996 1948 151 3 13 chr4 150696923 150697228 -33591434 - AluJb SINE Alu -6 306 5 393 242 57 93 chr4 150697422 150697670 -33590992 + L1ME4a LINE L1 5802 6040 -81 2123 127 21 9 chr4 150698202 150698533 -33590129 + MER1B DNA MER1_type 3 337 0 2376 100 0 0 chr4 150698546 150698847 -33589815 - AluSx SINE Alu -11 301 1 367 300 64 36 chr4 150699260 150699480 -33589182 - MIR SINE MIR -17 245 20 5431 176 57 8 chr4 150700166 150701357 -33587305 - L1MC1 LINE L1 0 6333 5096 1415 189 0 19 chr4 150701381 150701641 -33587021 + AluJo SINE Alu 1 255 -57 4142 229 43 14 chr4 150701641 150702754 -33585908 - L1MC1 LINE L1 -1053 5093 3948 24 32 0 0 chr4 150703664 150703695 -33584967 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr4 150703799 150703822 -33584840 + AT_rich Low_complexity Low_complexity 1 23 0 252 0 0 0 chr4 150704304 150704332 -33584330 + (T)n Simple_repeat Simple_repeat 1 28 0 527 197 57 33 chr4 150704502 150704624 -33584038 + FRAM SINE Alu 47 171 -5 243 0 0 0 chr4 150705360 150705387 -33583275 + (T)n Simple_repeat Simple_repeat 1 27 0 591 197 57 0 chr4 150705557 150705679 -33582983 + FRAM SINE Alu 47 175 -1 466 267 78 28 chr4 150707761 150707941 -33580721 + MER5A DNA MER1_type 1 189 0 694 294 91 17 chr4 150708156 150708387 -33580275 + MIR SINE MIR 11 258 -4 22 0 0 0 chr4 150709710 150709732 -33578930 + AT_rich Low_complexity Low_complexity 1 22 0 463 259 0 22 chr4 150709836 150709971 -33578691 + Charlie8 DNA MER1_type 61 192 -2225 1015 270 35 72 chr4 150710394 150710968 -33577694 - MLT1G1 LTR MaLR 0 555 1 547 278 35 23 chr4 150711227 150711400 -33577262 + MIR SINE MIR 17 191 -71 22 0 0 0 chr4 150713047 150713069 -33575593 + AT_rich Low_complexity Low_complexity 1 22 0 4043 154 63 25 chr4 150713316 150714250 -33574412 - L1PB4 LINE L1 -2 6154 5184 2359 81 0 3 chr4 150715077 150715375 -33573287 + AluSg SINE Alu 3 299 -11 531 274 240 10 chr4 150716640 150716848 -33571814 - MIR SINE MIR -5 257 2 4573 164 22 11 chr4 150718383 150719204 -33569458 - L1MB3 LINE L1 -9 6174 5345 32 26 0 0 chr4 150720639 150720678 -33567984 + AT_rich Low_complexity Low_complexity 1 39 0 23 33 0 0 chr4 150722322 150722352 -33566310 + AT_rich Low_complexity Low_complexity 1 30 0 25 83 0 0 chr4 150722574 150722634 -33566028 + AT_rich Low_complexity Low_complexity 1 60 0 31 58 0 0 chr4 150722808 150722860 -33565802 + AT_rich Low_complexity Low_complexity 1 52 0 906 181 7 0 chr4 150723403 150723558 -33565104 + FRAM SINE Alu 1 156 -20 437 237 40 46 chr4 150723897 150724049 -33564613 + MER104 DNA Tc2 4 154 -26 1937 141 3 13 chr4 150724059 150724363 -33564299 - AluJb SINE Alu -10 302 2 180 111 0 0 chr4 150724837 150724864 -33563798 + (TAAAAA)n Simple_repeat Simple_repeat 3 29 0 870 174 45 45 chr4 150724923 150725101 -33563561 - MER58A DNA MER1_type 0 224 47 226 267 57 0 chr4 150725108 150725213 -33563449 - L1MC/D LINE L1 -2078 5730 5620 1775 123 36 43 chr4 150725312 150725614 -33563048 - AluSx SINE Alu -12 300 1 443 270 55 68 chr4 150725700 150725937 -33562725 - MIR SINE MIR -21 241 8 21 0 0 0 chr4 150726096 150726117 -33562545 + AT_rich Low_complexity Low_complexity 1 21 0 403 267 110 7 chr4 150727163 150727309 -33561353 - L1ME LINE L1 -414 5707 5547 500 250 28 21 chr4 150729561 150729705 -33558957 - L2 LINE L2 0 3313 3169 666 276 70 11 chr4 150729772 150729957 -33558705 - MIR SINE MIR -38 224 29 844 215 204 4 chr4 150730470 150730730 -33557932 + MER46C DNA MER2_type 2 313 -25 190 323 46 0 chr4 150731120 150731185 -33557477 - L2 LINE L2 -49 3223 3156 423 173 173 27 chr4 150731265 150731375 -33557287 - L2 LINE L2 0 3313 3188 366 299 10 0 chr4 150733605 150733702 -33554960 - L2 LINE L2 -20 3293 3196 379 230 304 19 chr4 150733702 150733863 -33554799 + MIR SINE MIR 2 208 -54 5811 47 11 4 chr4 150735803 150736529 -33552133 - L1PA6 LINE L1 -7 6147 5417 190 275 72 14 chr4 150736557 150736626 -33552036 + MIR SINE MIR 88 160 -102 481 221 15 38 chr4 150737096 150737227 -33551435 - L2 LINE L2 -13 3300 3173 818 338 103 39 chr4 150737287 150737927 -33550735 + L2 LINE L2 2217 2897 -417 740 196 82 26 chr4 150739191 150739385 -33549277 + MIR SINE MIR 33 237 -25 180 418 71 7 chr4 150739652 150739793 -33548869 + L2 LINE L2 3116 3265 -7 1973 115 0 59 chr4 150740235 150740557 -33548105 - AluSg1 SINE Alu -6 303 1 2084 106 34 0 chr4 150741097 150741389 -33547273 - AluSx SINE Alu -7 305 4 22 35 0 0 chr4 150741757 150741786 -33546876 + AT_rich Low_complexity Low_complexity 1 29 0 220 273 193 23 chr4 150741941 150742029 -33546633 + L2 LINE L2 3169 3271 -1 47 0 0 0 chr4 150742225 150742272 -33546390 + AT_rich Low_complexity Low_complexity 1 47 0 847 103 0 0 chr4 150743307 150743423 -33545239 - AluSp/q SINE Alu -15 298 183 266 0 0 29 chr4 150743437 150743472 -33545190 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1644 176 48 7 chr4 150743478 150743767 -33544895 - AluJo SINE Alu -11 301 1 230 244 109 0 chr4 150744162 150744253 -33544409 + MIR SINE MIR 34 142 -66 323 355 106 14 chr4 150744253 150744470 -33544192 - MIR SINE MIR -4 258 22 200 283 0 0 chr4 150745257 150745310 -33543352 + (TATATG)n Simple_repeat Simple_repeat 6 58 0 2128 129 0 0 chr4 150745464 150745766 -33542896 + AluSx SINE Alu 1 302 -10 25 0 0 0 chr4 150745778 150745803 -33542859 + AT_rich Low_complexity Low_complexity 1 25 0 250 240 0 0 chr4 150746174 150746224 -33542438 + L2 LINE L2 3264 3313 0 25 0 0 0 chr4 150747787 150747812 -33540850 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr4 150751155 150751181 -33537481 + AT_rich Low_complexity Low_complexity 1 26 0 22 56 0 0 chr4 150751534 150751570 -33537092 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr4 150752824 150752847 -33535815 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 150754559 150754580 -33534082 + AT_rich Low_complexity Low_complexity 1 21 0 181 233 93 0 chr4 150755254 150755297 -33533365 - MIR3 SINE MIR -41 167 121 263 246 0 15 chr4 150755937 150756002 -33532660 + CT-rich Low_complexity Low_complexity 3 66 0 1763 189 43 8 chr4 150756205 150756576 -33532086 + L1MB7 LINE L1 5801 6184 0 25 51 0 0 chr4 150757052 150757091 -33531571 + AT_rich Low_complexity Low_complexity 1 39 0 551 233 161 44 chr4 150757442 150757622 -33531040 + MER20 DNA MER1_type 6 206 -13 239 105 53 0 chr4 150758499 150758537 -33530125 - HsTC2 DNA Tc2 -1830 68 29 232 286 51 31 chr4 150759700 150759798 -33528864 + MIR SINE MIR 89 188 -74 628 326 125 6 chr4 150760145 150760458 -33528204 + L3 LINE CR1 1158 1507 -70 203 301 219 8 chr4 150761082 150761205 -33527457 - MIR3 SINE MIR -54 154 6 203 268 0 0 chr4 150761234 150761275 -33527387 + (CA)n Simple_repeat Simple_repeat 1 41 0 1509 284 228 8 chr4 150761491 150762337 -33526325 - L2 LINE L2 0 3313 2245 1544 201 10 7 chr4 150762478 150762782 -33525880 - AluY SINE Alu -6 305 1 35 41 0 0 chr4 150762877 150762926 -33525736 + AT_rich Low_complexity Low_complexity 1 49 0 251 319 168 8 chr4 150763042 150763161 -33525501 - L2 LINE L2 -932 2382 2245 2266 89 10 7 chr4 150763303 150763606 -33525056 - AluY SINE Alu -7 304 1 1713 151 70 3 chr4 150763958 150764242 -33524420 - AluJo SINE Alu -9 303 1 1255 158 16 40 chr4 150867411 150867658 -33421004 - AluJb SINE Alu -17 295 55 180 264 33 99 chr4 150867804 150867895 -33420767 + L3 LINE CR1 1381 1465 -112 555 273 121 5 chr4 150868791 150868989 -33419673 - MIR SINE MIR -27 235 15 190 343 112 30 chr4 150869383 150869517 -33419145 - L2 LINE L2 -289 2983 2839 759 271 85 56 chr4 150869664 150869970 -33418692 + MLT1J LTR MaLR 3 317 -194 257 349 132 29 chr4 150870658 150871114 -33417548 - L2 LINE L2 -342 2972 2470 234 0 0 0 chr4 150871484 150871510 -33417152 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1257 118 0 6 chr4 150871513 150871683 -33416979 - AluSg/x SINE Alu -25 287 119 683 228 21 21 chr4 150872850 150873039 -33415623 - MER39B LTR ERV1 -39 614 426 1615 96 14 0 chr4 150873141 150873361 -33415301 - AluY SINE Alu -88 223 1 283 287 0 78 chr4 150873877 150873992 -33414670 + MIR SINE MIR 26 131 -77 494 241 49 73 chr4 150874074 150874360 -33414302 - HAL1 LINE L1 0 2507 2229 295 253 40 0 chr4 150874615 150874690 -33413972 - HAL1 LINE L1 -354 2153 2076 1160 287 98 44 chr4 150874949 150875757 -33412905 - HAL1 LINE L1 -603 1904 1052 198 0 0 0 chr4 150875757 150875779 -33412883 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 346 231 149 0 chr4 150876598 150876719 -33411943 - MIR SINE MIR -2 260 122 11529 134 40 19 chr4 150876835 150877617 -33411045 - L1MA8 LINE L1 -4 6287 5522 239 0 0 31 chr4 150877617 150877649 -33411013 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2029 131 3 0 chr4 150877649 150877931 -33410731 - AluSx SINE Alu -29 283 1 11529 134 40 19 chr4 150877931 150879852 -33408810 - L1MA8 LINE L1 -769 5522 3517 485 246 14 51 chr4 150879852 150879990 -33408672 - FLAM_C SINE Alu 0 133 1 11529 134 40 19 chr4 150879990 150880224 -33408438 - L1MA8 LINE L1 -2774 3517 3289 359 243 227 56 chr4 150880217 150880280 -33408382 - HAL1 LINE L1 -1465 1042 991 * 688 197 7 29 chr4 150880280 150880417 -33408245 - MER94 DNA DNA 0 134 1 359 243 227 56 chr4 150880417 150880604 -33408058 - HAL1 LINE L1 -1516 991 749 333 313 177 62 chr4 150880712 150881102 -33407560 - HAL1 LINE L1 -2026 481 47 794 253 191 62 chr4 150881197 150881648 -33407014 + MLT1J LTR MaLR 3 511 0 33 73 0 0 chr4 150881846 150881914 -33406748 + AT_rich Low_complexity Low_complexity 1 68 0 25 31 0 0 chr4 150881934 150881966 -33406696 + AT_rich Low_complexity Low_complexity 1 32 0 215 187 58 53 chr4 150881968 150882139 -33406523 + (TA)n Simple_repeat Simple_repeat 2 173 0 46 62 0 0 chr4 150882139 150882220 -33406442 + AT_rich Low_complexity Low_complexity 1 81 0 2702 134 13 66 chr4 150882263 150882734 -33405928 - Tigger2 DNA MER2_type 0 2718 2273 347 180 16 0 chr4 150882732 150882793 -33405869 - Tigger2 DNA MER2_type -2656 62 1 * 2321 237 120 14 chr4 150882862 150883601 -33405061 + L1MC4a LINE L1 5255 6072 -1736 568 226 108 38 chr4 150884036 150884222 -33404440 - MIR SINE MIR -29 233 35 2179 120 0 0 chr4 150884267 150884559 -33404103 - AluSx SINE Alu -20 292 1 1655 237 190 20 chr4 150884893 150885547 -33403115 + MER20B DNA MER1_type 5 769 -14 319 274 137 73 chr4 150885777 150885901 -33402761 - L2 LINE L2 0 3272 3141 237 295 126 43 chr4 150886051 150886258 -33402404 + L2 LINE L2 2432 2655 -659 344 328 34 0 chr4 150886264 150886383 -33402279 - LTR67 LTR ERVL -1 556 434 2024 199 75 64 chr4 150886845 150887393 -33401269 + MLT2B3 LTR ERVL 1 554 0 290 320 0 0 chr4 150887409 150887487 -33401175 + L2 LINE L2 2681 2758 -556 404 363 127 12 chr4 150887559 150887881 -33400781 + L2 LINE L2 2914 3272 0 778 265 28 62 chr4 150887901 150888192 -33400470 - LTR16A LTR ERVL -8 442 162 702 109 0 0 chr4 150888299 150888409 -33400253 + (TAGA)n Simple_repeat Simple_repeat 3 112 0 1029 241 47 22 chr4 150888420 150888698 -33399964 - MLT2F LTR ERVL -59 604 320 239 280 20 20 chr4 150888690 150888790 -33399872 - LTR16A1 LTR ERVL -354 103 4 * 613 230 124 0 chr4 150889272 150889433 -33399229 - MER117 DNA MER1_type -16 181 1 221 229 101 101 chr4 150890254 150890363 -33398299 - MIR SINE MIR -61 147 39 489 272 63 73 chr4 150890518 150890583 -33398079 + MER5A DNA MER1_type 1 65 -124 1811 102 4 12 chr4 150890583 150890838 -33397824 + AluSc SINE Alu 44 296 -13 489 272 63 73 chr4 150890838 150890963 -33397699 + MER5A DNA MER1_type 65 189 0 536 275 58 78 chr4 150891413 150891795 -33396867 + MLT1J2 LTR MaLR 77 450 0 693 276 56 5 chr4 150892389 150892606 -33396056 + MIR SINE MIR 10 251 -11 223 326 120 34 chr4 150892747 150892922 -33395740 - MIR3 SINE MIR -18 190 1 513 323 0 12 chr4 150892942 150893109 -33395553 + MIR SINE MIR 27 191 -71 180 200 0 0 chr4 150894131 150894176 -33394486 + CT-rich Low_complexity Low_complexity 1 45 0 968 156 0 13 chr4 150896121 150896275 -33392387 + FRAM SINE Alu 20 171 -5 647 274 12 18 chr4 150896392 150896556 -33392106 + L2 LINE L2 3110 3272 0 21 0 0 0 chr4 150896617 150896638 -33392024 + AT_rich Low_complexity Low_complexity 1 21 0 1591 87 0 10 chr4 150896792 150896998 -33391664 + AluSg/x SINE Alu 96 299 -13 434 330 40 25 chr4 150898022 150898222 -33390440 - MIR SINE MIR -27 235 33 483 278 61 11 chr4 150898840 150899020 -33389642 - MIR SINE MIR -72 190 2 195 42 0 0 chr4 150899335 150899359 -33389303 + (TA)n Simple_repeat Simple_repeat 2 25 0 250 242 182 0 chr4 150900272 150900371 -33388291 + MIR3 SINE MIR 15 131 -77 343 195 16 86 chr4 150900562 150900690 -33387972 + MIR SINE MIR 93 211 -51 227 31 31 0 chr4 150900730 150900762 -33387900 + (TTA)n Simple_repeat Simple_repeat 3 35 0 461 328 85 0 chr4 150900850 150901027 -33387635 - MIR SINE MIR -10 252 61 240 100 0 0 chr4 150901460 150901500 -33387162 + (CA)n Simple_repeat Simple_repeat 2 41 0 237 176 56 28 chr4 150902104 150902212 -33386450 + GA-rich Low_complexity Low_complexity 1 111 0 2692 215 86 85 chr4 150902266 150903260 -33385402 - L1MC5 LINE L1 -50 7911 6913 198 0 0 0 chr4 150903260 150903282 -33385380 + (CA)n Simple_repeat Simple_repeat 2 23 0 2692 215 86 85 chr4 150903282 150903515 -33385147 - L1MC5 LINE L1 -1048 6913 6682 418 181 161 47 chr4 150903515 150903664 -33384998 + Charlie7 DNA MER1_type 2446 2611 -1 330 339 40 17 chr4 150903666 150903840 -33384822 + MIR SINE MIR 18 195 -67 317 156 13 0 chr4 150903867 150903944 -33384718 + (TAGA)n Simple_repeat Simple_repeat 1 78 0 486 290 93 33 chr4 150904837 150905051 -33383611 - MIR SINE MIR -24 238 12 854 209 82 36 chr4 150905145 150905365 -33383297 - MIR SINE MIR -31 231 2 1941 134 34 20 chr4 150905365 150905663 -33382999 + AluSx SINE Alu 1 302 -10 24 0 0 0 chr4 150906031 150906055 -33382607 + AT_rich Low_complexity Low_complexity 1 24 0 261 265 88 59 chr4 150906502 150906604 -33382058 - MIR3 SINE MIR -7 201 97 588 322 29 5 chr4 150906729 150906934 -33381728 - MIR SINE MIR -28 234 25 181 242 192 17 chr4 150907397 150907517 -33381145 - MER5C DNA MER1_type -134 190 50 227 158 0 0 chr4 150907651 150907689 -33380973 - MIR SINE MIR -138 124 87 422 343 111 19 chr4 150907876 150908092 -33380570 - MIR SINE MIR -11 251 16 2257 107 0 0 chr4 150908524 150908823 -33379839 - AluSx SINE Alu -13 299 1 437 289 102 38 chr4 150909181 150909416 -33379246 + MIR SINE MIR 13 262 0 221 175 0 0 chr4 150909643 150909683 -33378979 + A-rich Low_complexity Low_complexity 3 42 0 1285 234 68 37 chr4 150909833 150910243 -33378419 - MLT1J1 LTR MaLR -5 441 19 434 218 109 67 chr4 150910972 150911033 -33377629 + MER112 DNA MER1_type 9 66 -194 195 42 0 0 chr4 150911033 150911057 -33377605 + (CA)n Simple_repeat Simple_repeat 1 24 0 434 218 109 67 chr4 150911057 150911107 -33377555 + MER112 DNA MER1_type 66 112 -148 2036 103 0 26 chr4 150911107 150911409 -33377253 + AluSg SINE Alu 1 294 -16 434 218 109 67 chr4 150911409 150911489 -33377173 + MER112 DNA MER1_type 112 209 -51 1063 101 0 0 chr4 150911665 150911803 -33376859 - AluSq/x SINE Alu -175 138 1 559 315 112 31 chr4 150912379 150912836 -33375826 + L2 LINE L2 1932 2425 -889 1266 269 108 19 chr4 150912836 150913333 -33375329 + L2 LINE L2 2780 3313 0 260 296 102 37 chr4 150913351 150913567 -33375095 + L2 LINE L2 2358 2587 -727 2070 136 52 89 chr4 150913682 150914220 -33374442 + MLT2A2 LTR ERVL 1 554 0 400 277 74 55 chr4 150914261 150914463 -33374199 + L2 LINE L2 2578 2783 -531 360 269 283 28 chr4 150914548 150914838 -33373824 + L2 LINE L2 2909 3272 0 810 327 93 25 chr4 150915507 150916226 -33372436 - L2 LINE L2 0 3313 2538 551 189 70 63 chr4 150916955 150917098 -33371564 + MER20 DNA MER1_type 6 149 -70 412 285 144 71 chr4 150917350 150917761 -33370901 + L2 LINE L2 2829 3269 -3 212 254 15 30 chr4 150917892 150917959 -33370703 + MER5B DNA MER1_type 3 68 -110 5024 174 10 13 chr4 150917991 150919391 -33369271 - L1MB7 LINE L1 -19 6165 4768 323 277 57 43 chr4 150919973 150920114 -33368548 + L2 LINE L2 3125 3267 -5 744 232 133 29 chr4 150920301 150920542 -33368120 - LTR33 LTR ERVL 0 521 256 370 342 66 59 chr4 150920720 150920894 -33367768 - L2 LINE L2 0 3272 3094 2042 164 97 16 chr4 150920894 150921326 -33367336 - MLT1C LTR MaLR 0 467 1 370 342 66 59 chr4 150921326 150921455 -33367207 - L2 LINE L2 -178 3094 2967 265 316 175 47 chr4 150921992 150922477 -33366185 - L2 LINE L2 -1047 2267 1721 229 283 117 0 chr4 150924915 150924975 -33363687 + L2 LINE L2 3206 3272 0 668 0 37 0 chr4 150925677 150925759 -33362903 + (TTTCC)n Simple_repeat Simple_repeat 2 86 0 1672 176 18 0 chr4 150925782 150926066 -33362596 - AluJb SINE Alu -23 289 1 452 247 148 34 chr4 150926066 150926249 -33362413 - MIR SINE MIR -50 212 10 192 210 25 111 chr4 150926419 150926500 -33362162 - L3 LINE CR1 -1197 380 307 427 279 137 22 chr4 150926762 150926945 -33361717 - L2 LINE L2 -17 3296 3093 1325 215 31 52 chr4 150926954 150927361 -33361301 - MER39 LTR ERV1 -1 706 164 797 190 185 0 chr4 150927354 150927538 -33361124 - MER39 LTR ERV1 -489 218 1 * 487 290 171 51 chr4 150927539 150928125 -33360537 - L2 LINE L2 -352 2962 2307 537 171 0 0 chr4 150929570 150929658 -33359004 + MER31A LTR ERV1 360 447 -38 921 136 0 0 chr4 150929659 150929791 -33358871 - MSTD LTR MaLR 0 396 265 186 191 0 0 chr4 150930090 150930137 -33358525 + CT-rich Low_complexity Low_complexity 1 47 0 620 147 37 18 chr4 150931344 150931453 -33357209 - MER53 DNA DNA -78 111 1 1880 188 67 70 chr4 150931776 150932027 -33356635 - MLT1C LTR MaLR -22 445 194 2077 111 10 0 chr4 150932027 150932324 -33356338 - AluSq SINE Alu -13 300 1 1880 188 67 70 chr4 150932324 150932518 -33356144 - MLT1C LTR MaLR -273 194 1 198 0 0 0 chr4 150933266 150933288 -33355374 + (TG)n Simple_repeat Simple_repeat 2 23 0 1662 204 42 11 chr4 150933451 150933828 -33354834 - MLT1B LTR MaLR 0 390 2 257 295 33 16 chr4 150933911 150934033 -33354629 - LTR67 LTR ERVL -1 556 433 23 33 0 0 chr4 150934685 150934715 -33353947 + AT_rich Low_complexity Low_complexity 1 30 0 404 258 21 21 chr4 150934728 150934825 -33353837 + MIR3 SINE MIR 109 205 -3 180 0 0 0 chr4 150935758 150935778 -33352884 + (A)n Simple_repeat Simple_repeat 1 20 0 189 214 0 0 chr4 150935958 150936000 -33352662 + T-rich Low_complexity Low_complexity 1 42 0 493 291 159 40 chr4 150936050 150936401 -33352261 + L2 LINE L2 2268 2660 -654 747 302 54 23 chr4 150936615 150937004 -33351658 + L2 LINE L2 2690 3088 -225 699 267 98 74 chr4 150937065 150937484 -33351178 + LTR16A LTR ERVL 17 445 -5 510 274 19 32 chr4 150937511 150937668 -33350994 + L2 LINE L2 3159 3313 0 26 0 0 0 chr4 150939430 150939456 -33349206 + AT_rich Low_complexity Low_complexity 1 26 0 1494 176 14 3 chr4 150939456 150939745 -33348917 + AluJo SINE Alu 1 292 -20 319 243 48 58 chr4 150939815 150939918 -33348744 - L2 LINE L2 -20 3252 3151 646 204 120 31 chr4 150940015 150940206 -33348456 + LTR50 LTR ERVL 3 210 -585 306 150 0 50 chr4 150940213 150940273 -33348389 + (TTCC)n Simple_repeat Simple_repeat 2 58 0 952 137 0 16 chr4 150940273 150940456 -33348206 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 330 26 0 0 chr4 150940457 150940496 -33348166 + (TTCC)n Simple_repeat Simple_repeat 2 40 0 1924 112 0 0 chr4 150940501 150940769 -33347893 - AluSc SINE Alu -10 299 32 1012 233 212 13 chr4 150940843 150941221 -33347441 + LTR50 LTR ERVL 339 791 -4 1018 189 113 21 chr4 150941313 150941551 -33347111 + LOR1a LTR ERV1 238 497 0 499 254 94 70 chr4 150941850 150942094 -33346568 + MLT1L LTR MaLR 2 251 -364 360 231 220 43 chr4 150942094 150942280 -33346382 + MIR SINE MIR 31 249 -13 419 194 16 5 chr4 150942402 150942488 -33346174 + AluJ/FLAM SINE Alu 1 66 -236 309 278 28 28 chr4 150942508 150942616 -33346046 + MLT1L LTR MaLR 356 463 -152 2026 159 31 0 chr4 150943506 150943858 -33344804 - MLT1A1 LTR MaLR 0 365 3 937 166 71 33 chr4 150944316 150944527 -33344135 + MER20 DNA MER1_type 1 219 0 189 311 170 19 chr4 150944528 150944634 -33344028 + L2 LINE L2 3190 3311 -2 387 234 218 43 chr4 150945494 150945682 -33342980 + MIR SINE MIR 29 249 -13 1797 128 21 14 chr4 150945806 150946094 -33342568 + AluJo SINE Alu 1 290 -22 914 209 29 19 chr4 150946825 150947031 -33341631 - MER3 DNA MER1_type 0 209 2 2145 100 0 10 chr4 150947354 150947675 -33340987 + AluSg SINE Alu 1 310 0 1226 245 50 72 chr4 150948366 150949104 -33339558 + L2 LINE L2 2555 3313 0 1528 176 46 46 chr4 150949788 150949814 -33338848 - L1MB2 LINE L1 -7 6164 6139 1927 138 7 0 chr4 150949814 150950097 -33338565 + AluSx SINE Alu 1 285 -27 1528 176 46 46 chr4 150950097 150950399 -33338263 - L1MB2 LINE L1 -31 6140 5836 1016 241 71 81 chr4 150950909 150951315 -33337347 + MLT1I LTR MaLR 8 409 0 219 133 0 0 chr4 150951742 150951787 -33336875 + (GA)n Simple_repeat Simple_repeat 1 45 0 22 35 0 0 chr4 150952255 150952284 -33336378 + AT_rich Low_complexity Low_complexity 1 29 0 306 0 0 0 chr4 150952354 150952388 -33336274 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 593 264 58 29 chr4 150952503 150952711 -33335951 - MIR SINE MIR -47 215 2 312 200 14 29 chr4 150953419 150953489 -33335173 + Tigger2 DNA MER2_type 1 69 -2649 * 2708 116 53 9 chr4 150953475 150953905 -33334757 + Tigger2 DNA MER2_type 2269 2717 -1 650 90 0 10 chr4 150954695 150954795 -33333867 + (TCTCC)n Simple_repeat Simple_repeat 1 99 0 800 126 0 0 chr4 150954795 150954914 -33333748 - AluSg/x SINE Alu -22 288 170 316 235 15 0 chr4 150955175 150955243 -33333419 + Tigger2 DNA MER2_type 1 69 -2649 228 192 0 19 chr4 150955233 150955285 -33333377 + Tigger2 DNA MER2_type 2273 2323 -395 * 2015 145 68 34 chr4 150956048 150956400 -33332262 - THE1B LTR MaLR 0 364 1 285 267 29 29 chr4 150956544 150956649 -33332013 - MER117 DNA MER1_type -33 164 60 237 171 0 0 chr4 150956759 150956800 -33331862 + L2 LINE L2 3272 3312 -1 261 215 104 56 chr4 150957074 150957218 -33331444 - L1ME4a LINE L1 -28 6093 5943 196 98 0 78 chr4 150957226 150957277 -33331385 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 232 282 26 13 chr4 150957279 150957357 -33331305 - L1ME4a LINE L1 -195 5926 5848 274 299 68 84 chr4 150958872 150959085 -33329577 - MLT1J LTR MaLR -198 313 105 5907 59 4 1 chr4 150959085 150959816 -33328846 - L1PA7 LINE L1 0 6154 5422 274 299 68 84 chr4 150959816 150959910 -33328752 - MLT1J LTR MaLR -406 105 11 * 855 230 80 132 chr4 150959906 150960453 -33328209 - MLT1H1 LTR MaLR -5 550 32 2014 167 9 15 chr4 150960662 150961004 -33327658 - MLT1A1 LTR MaLR -25 340 1 369 0 0 0 chr4 150961415 150961456 -33327206 + (CA)n Simple_repeat Simple_repeat 1 41 0 579 217 33 20 chr4 150963319 150963471 -33325191 - MIR SINE MIR -52 210 57 189 147 0 0 chr4 150966108 150966142 -33322520 + (TC)n Simple_repeat Simple_repeat 1 34 0 2134 195 84 113 chr4 150966777 150967526 -33321136 - LTR8A LTR ERV1 0 727 1 340 261 96 65 chr4 150967616 150967678 -33320984 + MIR SINE MIR 48 107 -155 2063 152 6 23 chr4 150967678 150968021 -33320641 - MER1B DNA MER1_type 0 337 1 340 261 96 65 chr4 150968021 150968157 -33320505 + MIR SINE MIR 107 252 -10 408 216 7 101 chr4 150972822 150972961 -33315701 - MIR SINE MIR -67 141 16 373 103 48 8 chr4 150973559 150973687 -33314975 + CT-rich Low_complexity Low_complexity 1 133 0 1155 214 162 44 chr4 150973760 150974167 -33314495 - MLT1J LTR MaLR -56 455 1 548 343 66 19 chr4 150974177 150974541 -33314121 + L3 LINE CR1 477 857 -720 1260 158 29 54 chr4 150974542 150974820 -33313842 + L1MB3 LINE L1 5911 6181 -2 2525 89 0 3 chr4 150974827 150975141 -33313521 + AluSq SINE Alu 1 313 0 181 245 41 0 chr4 150975143 150975192 -33313470 + L3 LINE CR1 842 892 -685 808 213 6 0 chr4 150975920 150976089 -33312573 + MER5B DNA MER1_type 1 170 -8 2248 83 42 3 chr4 150978140 150978429 -33310233 + AluSq SINE Alu 1 300 -13 615 288 156 24 chr4 150978509 150979066 -33309596 + L1MC4a LINE L1 5319 5957 -164 2356 117 0 0 chr4 150979244 150979553 -33309109 + AluSx SINE Alu 1 309 -3 404 86 14 0 chr4 150979553 150979623 -33309039 + (TA)n Simple_repeat Simple_repeat 1 71 0 940 187 6 28 chr4 150979681 150979863 -33308799 + MER74C LTR ERVL 11 188 -272 443 293 145 23 chr4 150980391 150980777 -33307885 + L1MC4a LINE L1 5525 5957 -164 2413 107 0 0 chr4 150980956 150981264 -33307398 + AluSx SINE Alu 1 308 -4 404 86 14 0 chr4 150981264 150981334 -33307328 + (TA)n Simple_repeat Simple_repeat 2 72 0 940 187 6 28 chr4 150981392 150981574 -33307088 + MER74C LTR ERVL 11 188 -272 189 367 61 10 chr4 150982320 150982418 -33306244 + MIR SINE MIR 48 150 -112 2273 117 0 0 chr4 150982724 150983024 -33305638 - AluSx SINE Alu -12 300 1 3285 104 98 8 chr4 150984009 150984489 -33304173 - MER1A DNA MER1_type -6 523 1 554 172 225 71 chr4 150985334 150985375 -33303287 - MER3 DNA MER1_type 0 209 176 2078 122 13 13 chr4 150985375 150985678 -33302984 - AluSx SINE Alu -9 303 1 554 172 225 71 chr4 150985678 150985805 -33302857 - MER3 DNA MER1_type -33 176 15 192 233 0 0 chr4 150986709 150986752 -33301910 + L2 LINE L2 3270 3312 -1 852 254 88 39 chr4 150987363 150987725 -33300937 - MLT1J1 LTR MaLR -2 444 65 278 243 0 27 chr4 150987984 150988058 -33300604 + LTR67 LTR ERVL 485 556 -1 4502 116 31 28 chr4 150988072 150988780 -33299882 + MER50 LTR ERV1 2 711 -23 304 222 56 22 chr4 150988821 150988911 -33299751 - L2 LINE L2 -12 3301 3209 2061 153 20 53 chr4 150991210 150991609 -33297053 + MLT1B LTR MaLR 5 390 0 288 0 0 0 chr4 150993162 150993194 -33295468 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 272 282 27 9 chr4 150993197 150993307 -33295355 - L2 LINE L2 -16 3297 3186 40 49 0 0 chr4 150993799 150993860 -33294802 + AT_rich Low_complexity Low_complexity 1 61 0 377 321 18 0 chr4 150996379 150996491 -33292171 - L2 LINE L2 -469 2845 2732 248 340 0 0 chr4 150996501 150996595 -33292067 - MER103 DNA DNA -62 104 11 303 194 28 14 chr4 150996891 150996963 -33291699 - L1MA6 LINE L1 -9 6291 6219 448 258 76 103 chr4 150996968 150997095 -33291567 - MLT1J1 LTR MaLR -69 377 248 1952 134 50 0 chr4 150997095 150997393 -33291269 - AluSq SINE Alu 0 313 1 448 258 76 103 chr4 150997393 150997595 -33291067 - MLT1J1 LTR MaLR -198 248 57 382 77 0 0 chr4 150999930 150999982 -33288680 - MADE1 DNA Mariner 0 80 29 215 349 0 0 chr4 151000086 151000169 -33288493 - L2 LINE L2 0 3313 3231 354 85 0 0 chr4 151000189 151000236 -33288426 - MADE1 DNA Mariner -30 50 4 227 200 0 0 chr4 151000563 151000603 -33288059 + L2 LINE L2 3255 3294 -19 201 349 0 0 chr4 151000613 151000696 -33287966 + L2 LINE L2 3231 3313 0 2118 138 0 6 chr4 151000934 151001246 -33287416 + AluSx SINE Alu 1 310 -2 500 204 66 31 chr4 151001569 151001765 -33286897 - Charlie7 DNA MER1_type 0 2612 2410 * 1191 251 27 34 chr4 151001750 151002032 -33286630 - Charlie7 DNA MER1_type -1889 723 443 658 186 39 0 chr4 151002032 151002161 -33286501 - MER94 DNA DNA 0 134 1 1191 251 27 34 chr4 151002161 151002292 -33286370 - Charlie7 DNA MER1_type -2169 443 313 285 280 50 10 chr4 151002829 151002929 -33285733 - MIR SINE MIR -71 191 88 3057 137 89 0 chr4 151003096 151003579 -33285083 + MER1A DNA MER1_type 2 527 0 332 283 58 36 chr4 151004000 151004138 -33284524 + MLT1J LTR MaLR 108 248 -263 276 240 31 62 chr4 151004213 151004309 -33284353 + MLT1J2 LTR MaLR 354 446 -4 3485 113 8 2 chr4 151004310 151004804 -33283858 + LOR1a LTR ERV1 1 497 0 213 317 89 32 chr4 151005135 151005258 -33283404 + L3b LINE CR1 1102 1231 -352 25 0 0 0 chr4 151005832 151005857 -33282805 + AT_rich Low_complexity Low_complexity 1 25 0 2256 122 0 3 chr4 151006001 151006312 -33282350 + AluSx SINE Alu 3 312 0 203 150 0 0 chr4 151006394 151006434 -33282228 + MIR SINE MIR 94 133 -129 791 210 140 111 chr4 151006434 151006876 -33281786 + LTR16A1 LTR ERVL 1 455 -2 1700 183 0 7 chr4 151006918 151007213 -33281449 + AluJb SINE Alu 1 293 -19 242 277 10 77 chr4 151007363 151007571 -33281091 - MIR SINE MIR -40 222 36 1892 112 94 4 chr4 151009830 151010107 -33278555 - AluSq SINE Alu -11 302 1 520 132 0 77 chr4 151010266 151010285 -33278377 + 5S rRNA rRNA 1 20 -101 2581 167 14 0 chr4 151010285 151010710 -33277952 - MSTB1 LTR MaLR -1 431 1 520 132 0 77 chr4 151010710 151010781 -33277881 + 5S rRNA rRNA 20 84 -37 666 303 8 42 chr4 151011072 151011333 -33277329 + MIR SINE MIR 8 259 -3 6031 75 11 43 chr4 151011334 151012227 -33276435 + L1MA1 LINE L1 5434 6298 -4 21 0 0 0 chr4 151012227 151012248 -33276414 + AT_rich Low_complexity Low_complexity 1 21 0 196 336 47 0 chr4 151013405 151013512 -33275150 + L2 LINE L2 3156 3267 -5 240 342 33 25 chr4 151013764 151013884 -33274778 + MIR SINE MIR 9 129 -133 2424 97 0 0 chr4 151014010 151014319 -33274343 - AluSx SINE Alu -3 309 1 548 275 25 6 chr4 151016691 151016851 -33271811 - LTR33 LTR ERVL -18 503 341 556 216 177 0 chr4 151016902 151017083 -33271579 - LTR33 LTR ERVL -308 213 1 289 318 84 0 chr4 151017312 151017419 -33271243 + L2 LINE L2 3151 3266 -6 21 0 0 0 chr4 151017983 151018004 -33270658 + AT_rich Low_complexity Low_complexity 1 21 0 275 257 132 28 chr4 151018948 151019236 -33269426 - L1ME4a LINE L1 -38 6083 5766 219 114 0 0 chr4 151020297 151020332 -33268330 + (GAAAA)n Simple_repeat Simple_repeat 5 39 0 333 0 0 0 chr4 151020519 151020556 -33268106 + (CA)n Simple_repeat Simple_repeat 2 38 0 410 282 114 15 chr4 151021847 151021978 -33266684 + MIR SINE MIR 19 162 -100 525 212 44 29 chr4 151022262 151022399 -33266263 - L2 LINE L2 0 3313 3175 231 36 0 0 chr4 151022757 151022785 -33265877 + (CAG)n Simple_repeat Simple_repeat 3 30 0 547 261 83 0 chr4 151023262 151023442 -33265220 - MIR SINE MIR -1 261 67 1846 142 42 60 chr4 151023482 151023862 -33264800 + MLT1B LTR MaLR 18 390 0 253 320 0 20 chr4 151024133 151024233 -33264429 - L2 LINE L2 0 3272 3175 275 250 22 43 chr4 151024536 151024628 -33264034 + GA-rich Low_complexity Low_complexity 2 91 0 190 275 14 14 chr4 151024628 151024697 -33263965 - MIR SINE MIR -6 256 188 307 157 0 0 chr4 151024738 151024789 -33263873 + MER96 DNA MER1_type? 108 158 -17 2921 182 41 4 chr4 151025986 151026524 -33262138 - MLT1F1 LTR MaLR -8 559 2 1963 139 9 22 chr4 151026634 151026950 -33261712 + AluSx SINE Alu 1 312 0 2243 161 14 0 chr4 151027023 151027383 -33261279 - MLT1A1 LTR MaLR 0 365 1 204 97 0 0 chr4 151030109 151030140 -33258522 + (TGGGGG)n Simple_repeat Simple_repeat 6 36 0 5406 180 52 46 chr4 151032390 151032450 -33256212 - Charlie1a DNA MER1_type -1307 1454 1396 2024 222 62 14 chr4 151032450 151032932 -33255730 - MLT1D LTR MaLR 0 505 1 5406 180 52 46 chr4 151032932 151034112 -33254550 - Charlie1a DNA MER1_type -1365 1396 207 2579 128 3 0 chr4 151034115 151034489 -33254173 - THE1C LTR MaLR 0 375 1 10906 102 33 14 chr4 151034489 151036023 -33252639 - THE1C-int LTR MaLR 0 1580 17 2647 120 3 0 chr4 151036040 151036414 -33252248 - THE1C LTR MaLR 0 375 1 1294 154 10 10 chr4 151036414 151036622 -33252040 - Charlie1a DNA MER1_type -1247 208 1 3220 209 12 27 chr4 151036908 151037637 -33251025 - L1ME1 LINE L1 -5 6161 5444 1942 89 41 95 chr4 151037656 151037972 -33250690 + AluSq SINE Alu 1 299 -14 22 35 0 0 chr4 151038126 151038155 -33250507 + AT_rich Low_complexity Low_complexity 1 29 0 1408 241 93 76 chr4 151038901 151038946 -33249716 - MLT1E LTR MaLR -2 591 548 1190 213 175 11 chr4 151038946 151039312 -33249350 + MSTC LTR MaLR 3 428 0 1408 241 93 76 chr4 151039312 151039847 -33248815 - MLT1E LTR MaLR -45 548 1 2828 93 0 0 chr4 151040267 151040631 -33248031 - THE1B LTR MaLR 0 364 1 624 237 81 25 chr4 151040803 151041001 -33247661 + MLT1J2 LTR MaLR 25 233 -217 513 58 0 0 chr4 151041563 151041632 -33247030 + (CA)n Simple_repeat Simple_repeat 2 70 0 203 319 160 0 chr4 151041647 151041766 -33246896 - MIR SINE MIR -84 178 41 562 258 0 0 chr4 151041861 151041989 -33246673 - MER91B DNA MER1_type 0 190 63 226 239 28 42 chr4 151042005 151042076 -33246586 + MER91C DNA MER1_type 57 126 -14 25 0 0 0 chr4 151042219 151042244 -33246418 + AT_rich Low_complexity Low_complexity 1 25 0 1043 95 79 11 chr4 151042658 151042848 -33245814 + L1MA5A LINE L1 6095 6297 0 469 309 25 0 chr4 151043114 151043276 -33245386 + MIR SINE MIR 97 262 0 26 30 0 0 chr4 151043282 151043315 -33245347 + AT_rich Low_complexity Low_complexity 1 33 0 216 190 0 13 chr4 151044046 151044094 -33244568 - MER91B DNA MER1_type -93 47 1 262 156 31 0 chr4 151044858 151044922 -33243740 + (TTATA)n Simple_repeat Simple_repeat 5 70 0 243 319 97 26 chr4 151045695 151045808 -33242854 - L2 LINE L2 -18 3254 3134 591 243 86 40 chr4 151045866 151046088 -33242574 + MIR SINE MIR 18 249 -13 22 0 0 0 chr4 151047605 151047627 -33241035 + AT_rich Low_complexity Low_complexity 1 22 0 189 222 175 0 chr4 151048496 151048559 -33240103 - MIR SINE MIR -125 137 64 922 134 5 98 chr4 151048562 151048756 -33239906 + AluSg/x SINE Alu 137 312 0 417 39 0 0 chr4 151049519 151049570 -33239092 + (CA)n Simple_repeat Simple_repeat 2 52 0 330 192 23 40 chr4 151049586 151049763 -33238899 + GA-rich Low_complexity Low_complexity 1 174 0 2083 115 0 14 chr4 151049923 151050202 -33238460 + AluSx SINE Alu 1 275 -37 197 32 0 32 chr4 151050205 151050236 -33238426 + (CAAAA)n Simple_repeat Simple_repeat 5 34 0 2705 168 26 66 chr4 151050241 151050819 -33237843 + LTR9 LTR ERV1 58 612 0 453 248 57 7 chr4 151050893 151050924 -33237738 + MER5B DNA MER1_type 31 59 -119 228 67 0 0 chr4 151050924 151050954 -33237708 + (CCA)n Simple_repeat Simple_repeat 1 30 0 453 248 57 7 chr4 151050954 151051063 -33237599 + MER5B DNA MER1_type 59 178 0 184 288 82 14 chr4 151051063 151051125 -33237537 + L3 LINE CR1 1510 1576 -1 229 88 0 29 chr4 151051167 151051201 -33237461 - MLT2C1 LTR ERVL -158 239 207 227 289 0 41 chr4 151051996 151052093 -33236569 + L2 LINE L2 3209 3301 -12 412 229 252 0 chr4 151052256 151052387 -33236275 + MIR SINE MIR 29 192 -70 973 221 52 24 chr4 151052416 151052629 -33236033 + MER58A DNA MER1_type 6 224 0 795 272 38 93 chr4 151055337 151055929 -33232733 - L2 LINE L2 -4 3309 2740 786 281 38 66 chr4 151055929 151056352 -33232310 + MLT1J LTR MaLR 1 411 -100 714 278 33 59 chr4 151056424 151056730 -33231932 - L2 LINE L2 -574 2740 2443 302 194 54 54 chr4 151056933 151057026 -33231636 - LTR67 LTR ERVL -8 549 457 209 327 108 54 chr4 151057452 151057730 -33230932 - L3b LINE CR1 -29 1554 1262 1355 118 97 8 chr4 151058691 151058928 -33229734 - L1MB4 LINE L1 0 6180 5923 2155 118 0 14 chr4 151058944 151059241 -33229421 - AluSc SINE Alu -15 294 2 292 316 140 0 chr4 151059398 151059569 -33229093 - MIR SINE MIR -65 197 3 499 250 116 82 chr4 151059750 151059982 -33228680 + MIR SINE MIR 2 241 -21 926 200 11 11 chr4 151060032 151060207 -33228455 - FRAM SINE Alu 0 176 2 385 286 95 22 chr4 151060281 151060512 -33228150 - MLT1L LTR MaLR 0 615 368 346 300 64 0 chr4 151061377 151061574 -33227088 + L1MEc LINE L1 1532 1736 -4648 37 23 0 0 chr4 151061947 151061991 -33226671 + AT_rich Low_complexity Low_complexity 1 44 0 338 172 31 0 chr4 151062641 151062705 -33225957 + LTR38 LTR ERV1 472 537 -19 303 267 22 33 chr4 151062869 151062959 -33225703 + L1M3de LINE L1 278 366 -6287 230 233 70 0 chr4 151062986 151063029 -33225633 + L1M3de LINE L1 935 980 -5673 289 300 12 12 chr4 151063183 151063263 -33225399 + L1M3de LINE L1 279 358 -6295 1377 262 78 14 chr4 151063302 151063672 -33224990 + L1M3de LINE L1 935 1328 -5325 800 229 11 11 chr4 151066342 151066517 -33222145 - FRAM SINE Alu 0 176 2 234 319 94 21 chr4 151066591 151066826 -33221836 - MLT1L LTR MaLR 0 615 364 2362 98 7 0 chr4 151067829 151068135 -33220527 + AluSx SINE Alu 1 308 -4 217 417 8 0 chr4 151068262 151068382 -33220280 - MIR SINE MIR -133 129 9 196 336 47 0 chr4 151068634 151068741 -33219921 - L2 LINE L2 -5 3267 3156 1976 153 0 0 chr4 151072235 151072535 -33216127 + AluSx SINE Alu 1 300 -12 289 336 122 0 chr4 151075025 151075156 -33213506 + MER117 DNA MER1_type 47 193 -4 961 222 0 13 chr4 151075426 151075656 -33213006 - AluY SINE Alu -1 310 84 25 0 0 0 chr4 151076914 151076939 -33211723 + AT_rich Low_complexity Low_complexity 1 25 0 397 171 14 0 chr4 151077095 151077165 -33211497 + AluS SINE Alu 15 85 -217 226 114 0 0 chr4 151077267 151077302 -33211360 + L1MB4 LINE L1 6146 6180 0 902 190 51 5 chr4 151080538 151080733 -33207929 + Tigger1 DNA MER2_type 1156 1359 -1059 423 171 34 0 chr4 151080778 151080866 -33207796 + Tigger1 DNA MER2_type 1283 1373 -1045 21 0 0 0 chr4 151082383 151082404 -33206258 + AT_rich Low_complexity Low_complexity 1 21 0 2017 156 7 74 chr4 151083129 151083547 -33205115 + MLT1B LTR MaLR 1 390 0 360 224 0 0 chr4 151087129 151087205 -33201457 - MER58B DNA MER1_type -9 332 257 285 51 0 0 chr4 151088022 151088061 -33200601 + (TG)n Simple_repeat Simple_repeat 1 39 0 394 244 29 35 chr4 151088629 151088801 -33199861 + GA-rich Low_complexity Low_complexity 2 172 0 2083 115 0 14 chr4 151088940 151089219 -33199443 + AluSx SINE Alu 1 275 -37 197 32 0 32 chr4 151089222 151089253 -33199409 + (CAAAA)n Simple_repeat Simple_repeat 5 34 0 2693 170 26 66 chr4 151089258 151089836 -33198826 + LTR9 LTR ERV1 58 612 0 228 316 86 22 chr4 151089895 151090061 -33198601 - MER5A DNA MER1_type -10 179 32 404 255 50 14 chr4 151089912 151089943 -33198719 + MER5A DNA MER1_type 44 72 -117 210 71 0 0 chr4 151089943 151089971 -33198691 + (CCA)n Simple_repeat Simple_repeat 1 28 0 404 255 50 14 chr4 151089971 151090080 -33198582 + MER5A DNA MER1_type 72 189 0 203 299 0 41 chr4 151091015 151091112 -33197550 + L2 LINE L2 3209 3301 -12 392 237 252 0 chr4 151091275 151091406 -33197256 + MIR SINE MIR 29 192 -70 817 210 54 27 chr4 151091462 151091648 -33197014 + MER58A DNA MER1_type 34 224 0 297 317 115 12 chr4 151092168 151092411 -33196251 + L1MEc LINE L1 1532 1929 -4634 37 23 0 0 chr4 151092747 151092791 -33195871 + AT_rich Low_complexity Low_complexity 1 44 0 437 336 14 19 chr4 151093353 151093567 -33195095 + L1M4 LINE L1 4106 4318 -1828 287 273 55 31 chr4 151093766 151093894 -33194768 + L1ME4a LINE L1 5980 6110 -11 220 229 0 0 chr4 151095382 151095430 -33193232 + MIR SINE MIR 50 97 -165 * 344 290 76 15 chr4 151095429 151095560 -33193102 - MIR SINE MIR -4 258 120 370 285 73 24 chr4 151095599 151095764 -33192898 - LTR16A LTR ERVL -75 375 203 189 0 0 0 chr4 151096302 151096323 -33192339 + (TGGG)n Simple_repeat Simple_repeat 3 23 0 411 337 93 0 chr4 151097119 151097291 -33191371 + MER117 DNA MER1_type 6 193 -4 1772 78 0 13 chr4 151097557 151097788 -33190874 - AluY SINE Alu 0 311 84 5814 157 36 23 chr4 151097928 151099934 -33188728 + L1PA16 LINE L1 4122 6157 -9 3624 111 71 9 chr4 151101462 151102040 -33186622 - MER39B LTR ERV1 -39 614 1 3029 154 68 6 chr4 151102514 151103045 -33185617 - MER45B DNA AcHobo 0 1040 477 704 206 116 0 chr4 151103042 151103197 -33185465 - MER45B DNA AcHobo -798 242 70 * 245 194 37 65 chr4 151103794 151103902 -33184760 + L2 LINE L2 3116 3220 -93 219 276 15 97 chr4 151103958 151104092 -33184570 + MER91B DNA MER1_type 7 129 -61 446 234 11 0 chr4 151104107 151104201 -33184461 + MER91B DNA MER1_type 87 181 -9 273 245 28 19 chr4 151104296 151104402 -33184260 + (TA)n Simple_repeat Simple_repeat 2 108 0 267 103 0 0 chr4 151105289 151105328 -33183334 + (GAAAA)n Simple_repeat Simple_repeat 3 41 0 238 309 11 83 chr4 151105380 151105561 -33183101 - MIR SINE MIR -24 238 71 857 173 68 120 chr4 151106092 151106125 -33182537 + LTR49 LTR ERV1 1 34 -561 1992 127 30 20 chr4 151106125 151106425 -33182237 - AluSx SINE Alu -9 303 1 857 173 68 120 chr4 151106425 151107021 -33181641 + LTR49 LTR ERV1 34 564 -31 1611 169 46 18 chr4 151107237 151107521 -33181141 + AluJo SINE Alu 1 292 -20 22 0 0 0 chr4 151107521 151107543 -33181119 + AT_rich Low_complexity Low_complexity 1 22 0 1827 240 69 27 chr4 151107710 151108235 -33180427 + LTR38 LTR ERV1 1 547 -9 338 256 22 33 chr4 151108389 151108479 -33180183 + L1M3de LINE L1 1111 1199 -6287 275 333 0 42 chr4 151108495 151108591 -33180071 + L1M3de LINE L1 1112 1203 -6283 235 262 0 0 chr4 151108616 151108658 -33180004 + L1M3de LINE L1 1777 1818 -5668 371 245 11 64 chr4 151108703 151108797 -33179865 + L1M3de LINE L1 1112 1200 -6286 1799 273 81 0 chr4 151108820 151109253 -33179409 + L1M3de LINE L1 1768 2235 -5251 995 158 0 34 chr4 151109272 151109449 -33179213 - AluJb SINE Alu -2 310 140 2602 219 39 54 chr4 151109449 151110319 -33178343 + L1M3de LINE L1 1997 2970 -4516 1969 135 78 9 chr4 151110325 151110692 -33177970 + LTR7 LTR ERV1 1 448 -2 738 206 39 47 chr4 151110692 151110913 -33177749 + L1M3de LINE L1 2823 3260 -4306 * 1231 233 90 19 chr4 151110911 151111550 -33177112 + L1M3de LINE L1 3026 3721 -3844 1689 136 26 46 chr4 151111551 151111897 -33176765 + L1MA7 LINE L1 5953 6291 0 297 260 183 29 chr4 151111906 151112010 -33176652 + L2 LINE L2 3192 3311 -2 186 265 0 20 chr4 151112179 151112228 -33176434 - L2 LINE L2 -1 3312 3265 1521 139 0 1 chr4 151112228 151112529 -33176133 + LTR32 LTR ERVL 15 349 -122 257 118 0 0 chr4 151112567 151112601 -33176061 + LTR32 LTR ERVL 316 349 -122 908 149 34 0 chr4 151112603 151112751 -33175911 + LTR32 LTR ERVL 317 469 -2 6979 252 34 33 chr4 151112751 151114386 -33174276 + HERVL32 LTR ERVL 2 1641 -1777 2737 111 41 5 chr4 151114386 151114799 -33173863 + MSTA LTR MaLR 1 428 0 6979 252 34 33 chr4 151114799 151115080 -33173582 + HERVL32 LTR ERVL 1641 1920 -1498 902 187 20 147 chr4 151115063 151115362 -33173300 + HERVL32 LTR ERVL 2024 2284 -1134 * 2695 212 91 70 chr4 151115366 151116172 -33172490 + HERVL32 LTR ERVL 2391 3213 -205 362 283 0 9 chr4 151116684 151116790 -33171872 + PRIMA41-int LTR ERV1 6327 6431 -1325 437 223 54 31 chr4 151116825 151116955 -33171707 + HERVL32 LTR ERVL 3286 3418 0 2029 178 5 3 chr4 151116955 151117376 -33171286 + LTR32 LTR ERVL 13 471 0 560 274 128 30 chr4 151117828 151118149 -33170513 + L1ME4a LINE L1 5648 6023 -98 2030 110 7 0 chr4 151118149 151118450 -33170212 - AluSg SINE Alu -7 303 1 560 274 128 30 chr4 151118450 151118559 -33170103 + L1ME4a LINE L1 6023 6120 -1 816 182 112 6 chr4 151118630 151118769 -33169893 - MER5A DNA MER1_type 0 189 27 285 29 0 0 chr4 151118769 151118803 -33169859 + (ATG)n Simple_repeat Simple_repeat 1 34 0 816 182 112 6 chr4 151118803 151118833 -33169829 - MER5A DNA MER1_type -162 27 2 261 222 0 0 chr4 151119341 151119404 -33169258 + GA-rich Low_complexity Low_complexity 2 64 0 204 98 0 73 chr4 151120706 151120747 -33167915 + (CTTTG)n Simple_repeat Simple_repeat 3 40 0 447 271 67 123 chr4 151122705 151122989 -33165673 - L2 LINE L2 -2 3270 3003 295 242 30 0 chr4 151123334 151123400 -33165262 - MER58 DNA MER1_type 0 2420 2353 695 306 20 16 chr4 151124097 151124342 -33164320 - MIR SINE MIR 0 262 17 1413 269 82 31 chr4 151124770 151125256 -33163406 + MLT1H LTR MaLR 7 517 -32 300 193 18 0 chr4 151125979 151126036 -33162626 - MER58 DNA MER1_type -45 2375 2318 603 184 10 0 chr4 151126048 151126146 -33162516 - MER58 DNA MER1_type -242 99 1 303 235 56 6 chr4 151126316 151126478 -33162184 + (TTATA)n Simple_repeat Simple_repeat 3 172 0 336 244 24 65 chr4 151126952 151127075 -33161587 - L1MC4a LINE L1 -1862 5946 5829 611 280 117 19 chr4 151127614 151127871 -33160791 - MLT1J LTR MaLR 0 511 230 570 216 52 8 chr4 151129635 151129769 -33158893 + L2 LINE L2 3172 3311 -2 998 252 196 38 chr4 151130975 151131008 -33157654 + L2 LINE L2 2726 2752 -561 1681 217 21 24 chr4 151131008 151131382 -33157280 + MLT1A2 LTR MaLR 2 374 0 998 252 196 38 chr4 151131382 151131865 -33156797 + L2 LINE L2 2752 3311 -2 906 196 0 0 chr4 151134930 151135098 -33153564 + AluJo SINE Alu 122 289 -23 1589 118 0 0 chr4 151135123 151135344 -33153318 + AluSc SINE Alu 80 300 -9 2280 84 0 3 chr4 151135723 151136021 -33152641 - AluSq SINE Alu -16 297 1 616 259 65 32 chr4 151137258 151137443 -33151219 - MIR SINE MIR -52 210 20 1123 257 168 15 chr4 151137612 151138340 -33150322 + L2 LINE L2 2469 3312 -1 223 313 12 12 chr4 151139221 151139301 -33149361 - MER5A DNA MER1_type -74 115 36 646 115 58 0 chr4 151139461 151139565 -33149097 - LTR61 LTR ERV1 0 595 486 346 359 19 0 chr4 151139579 151139685 -33148977 + L2 LINE L2 3203 3310 -3 2086 120 0 0 chr4 151139685 151139976 -33148686 + AluSx SINE Alu 5 295 -17 276 343 114 34 chr4 151139999 151140174 -33148488 - MIR SINE MIR -43 219 31 410 326 141 34 chr4 151140606 151141195 -33147467 + L2 LINE L2 2555 3258 -14 303 228 91 113 chr4 151142766 151142879 -33145783 + L1ME4a LINE L1 5798 5912 -209 318 26 0 0 chr4 151142879 151142918 -33145744 + (CA)n Simple_repeat Simple_repeat 1 39 0 303 228 91 113 chr4 151142918 151143124 -33145538 + L1ME4a LINE L1 5912 6110 -11 595 246 0 70 chr4 151143902 151144073 -33144589 + MER97a DNA MER1_type? 21 179 -715 1021 32 0 0 chr4 151144154 151144277 -33144385 + L1PA5 LINE L1 6032 6154 0 1727 135 0 83 chr4 151144299 151144624 -33144038 + AluSx SINE Alu 5 302 -10 501 298 58 0 chr4 151144631 151144802 -33143860 + MIR SINE MIR 32 212 -50 2097 159 5 67 chr4 151145979 151146395 -33142267 + MLT1B LTR MaLR 1 390 0 287 253 38 0 chr4 151148509 151148588 -33140074 + (CATA)n Simple_repeat Simple_repeat 2 83 0 264 291 45 27 chr4 151149138 151149248 -33139414 - Tigger8 DNA MER2_type -525 141 30 221 209 43 173 chr4 151149734 151149800 -33138862 - MER5A DNA MER1_type -60 129 89 2076 125 3 6 chr4 151149800 151150111 -33138551 - AluSq SINE Alu -2 311 2 221 209 43 173 chr4 151150111 151150183 -33138479 - MER5A DNA MER1_type -100 89 9 1698 162 0 7 chr4 151150269 151150553 -33138109 + AluJo SINE Alu 1 282 -30 248 240 143 57 chr4 151151007 151151182 -33137480 + L2 LINE L2 2957 3146 -167 311 270 26 52 chr4 151151760 151151875 -33136787 - L2 LINE L2 -569 2745 2634 188 242 32 65 chr4 151152000 151152062 -33136600 + L2 LINE L2 3164 3223 -49 314 296 9 19 chr4 151152836 151152944 -33135718 + MIR3 SINE MIR 97 203 -5 233 91 0 0 chr4 151154073 151154106 -33134556 + L2 LINE L2 3280 3312 -1 1689 194 117 14 chr4 151154292 151154721 -33133941 + L1MD2 LINE L1 5887 6359 0 518 224 297 23 chr4 151156679 151156898 -33131764 + L2 LINE L2 3005 3283 -30 735 289 118 43 chr4 151156898 151157366 -33131296 + MLT1J LTR MaLR 1 503 -8 2111 125 0 3 chr4 151157412 151157725 -33130937 - AluSq SINE Alu 0 313 2 216 286 24 60 chr4 151157745 151157829 -33130833 - MER5A DNA MER1_type -35 154 74 193 196 48 98 chr4 151157895 151157978 -33130684 + MIR SINE MIR 27 114 -94 338 271 156 15 chr4 151159113 151159312 -33129350 + LTR33 LTR ERVL 230 456 -65 373 267 202 23 chr4 151159874 151160055 -33128607 + MIR SINE MIR 40 249 -13 349 287 132 8 chr4 151160252 151160381 -33128281 + MER5A DNA MER1_type 45 189 0 212 167 0 0 chr4 151160923 151160959 -33127703 + CT-rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr4 151161261 151161289 -33127373 + AT_rich Low_complexity Low_complexity 1 28 0 471 324 60 28 chr4 151161750 151161966 -33126696 - L2 LINE L2 -4 3268 3046 650 277 62 4 chr4 151162499 151162755 -33125907 - HAL1b LINE L1 -49 1299 1029 971 144 5 72 chr4 151162768 151162962 -33125700 - MIR SINE MIR -64 198 18 963 282 87 40 chr4 151162966 151163302 -33125360 - HAL1b LINE L1 -739 609 233 2577 108 83 34 chr4 151163302 151163710 -33124952 - MSTA LTR MaLR 0 428 1 963 282 87 40 chr4 151163710 151163948 -33124714 - HAL1b LINE L1 -1115 233 8 218 247 43 32 chr4 151163955 151164048 -33124614 + T-rich Low_complexity Low_complexity 3 96 0 787 192 102 0 chr4 151164327 151164494 -33124168 - L1MB5 LINE L1 -40 6134 5951 3284 194 31 38 chr4 151165191 151165901 -33122761 - L1MB5 LINE L1 0 6174 5470 314 276 86 17 chr4 151166061 151166177 -33122485 - L2 LINE L2 -10 3303 3180 1443 246 84 27 chr4 151166183 151166586 -33122076 - MLT1D LTR MaLR -2 503 78 993 93 0 7 chr4 151166586 151166725 -33121937 + L1P LINE L1 4893 5030 -1116 1391 93 0 16 chr4 151166825 151167018 -33121644 - AluY SINE Alu -38 273 84 2538 231 29 5 chr4 151167206 151167825 -33120837 + L1 LINE L1 4213 4846 -1300 745 129 0 0 chr4 151169184 151169285 -33119377 - AluS SINE Alu -210 102 2 264 263 84 0 chr4 151169393 151169488 -33119174 - MLT1J1 LTR MaLR -287 159 57 1235 225 18 45 chr4 151170522 151170877 -33117785 - L1MB5 LINE L1 -359 5825 5485 223 355 74 8 chr4 151171049 151171170 -33117492 - L2 LINE L2 -10 3262 3134 1443 246 84 27 chr4 151171171 151171574 -33117088 - MLT1D LTR MaLR -2 503 78 3689 73 10 0 chr4 151171574 151172068 -33116594 + L1PA7 LINE L1 4893 5391 -755 5023 68 2 2 chr4 151172070 151172672 -33115990 + L1PA7 LINE L1 5540 6141 -13 390 81 8 266 chr4 151172684 151172808 -33115854 - MLT1D LTR MaLR -413 92 1 966 283 4 8 chr4 151172832 151173072 -33115590 - MIR SINE MIR 0 262 24 1485 195 26 44 chr4 151173436 151173779 -33114883 + MER46C DNA MER2_type 2 338 0 317 292 44 36 chr4 151174234 151174371 -33114291 + MIR3 SINE MIR 11 148 -60 324 306 20 0 chr4 151177615 151177713 -33110949 + L2 LINE L2 2530 2629 -685 3611 102 12 31 chr4 151177849 151178357 -33110305 - MER1A DNA MER1_type -31 498 1 1648 215 247 52 chr4 151178382 151178434 -33110228 - Charlie2a DNA MER1_type -14 2848 2807 1191 209 115 38 chr4 151178434 151178773 -33109889 - MLT1A1 LTR MaLR 0 365 1 1648 215 247 52 chr4 151178773 151179593 -33109069 - Charlie2a DNA MER1_type -55 2807 1805 899 255 9 9 chr4 151179603 151179834 -33108828 + L1ME3A LINE L1 5906 6136 -34 * 5902 84 2 8 chr4 151179828 151180626 -33108036 - L1PA13 LINE L1 -5 6158 5365 1102 235 68 3 chr4 151180626 151180950 -33107712 - Charlie2a DNA MER1_type -1044 1818 1474 2688 91 8 8 chr4 151181134 151181496 -33107166 + L1PA13 LINE L1 5802 6163 0 1382 155 0 0 chr4 151181508 151181708 -33106954 + AluJb SINE Alu 45 244 -68 189 0 0 0 chr4 151181713 151181734 -33106928 + (A)n Simple_repeat Simple_repeat 1 21 0 1019 235 54 29 chr4 151181788 151182065 -33106597 - Charlie2 DNA MER1_type -2467 315 32 491 293 34 48 chr4 151182574 151182782 -33105880 - MIR SINE MIR -48 214 10 2316 99 0 0 chr4 151183265 151183557 -33105105 + AluSc SINE Alu 1 292 -17 650 300 93 46 chr4 151183806 151184173 -33104489 + LTR16C LTR ERVL 107 490 -1 382 259 0 0 chr4 151185271 151185356 -33103306 - MER117 DNA MER1_type -50 147 63 284 248 59 40 chr4 151185415 151185516 -33103146 - L2 LINE L2 -62 3251 3149 831 276 48 99 chr4 151185544 151186047 -33102615 + MLT1J LTR MaLR 33 509 -2 775 239 65 81 chr4 151186841 151187151 -33101511 - MLT1K LTR MaLR 0 588 284 536 255 153 0 chr4 151187456 151187613 -33101049 - MER5A DNA MER1_type 0 189 9 269 344 88 16 chr4 151190110 151190235 -33098427 + L2 LINE L2 3134 3267 -5 270 272 31 7 chr4 151190408 151190503 -33098159 + MIR SINE MIR 20 115 -93 8704 126 38 4 chr4 151190605 151191919 -33096743 + Tigger1 DNA MER2_type 1 1359 -1059 228 111 0 0 chr4 151191919 151191955 -33096707 + Tigger1 DNA MER2_type 1290 1325 -1093 495 110 0 0 chr4 151191964 151192037 -33096625 + Tigger1 DNA MER2_type 1283 1355 -1063 1998 58 0 4 chr4 151193734 151193975 -33094687 + AluY SINE Alu 58 297 -14 285 262 112 9 chr4 151195101 151195208 -33093454 + L1M4 LINE L1 4697 4814 -1332 236 304 106 37 chr4 151195325 151195486 -33093176 + MIR SINE MIR 20 191 -71 546 271 0 0 chr4 151195495 151195624 -33093038 - LTR67 LTR ERVL 0 557 429 238 333 59 29 chr4 151196584 151196686 -33091976 + L2 LINE L2 3186 3290 -23 1639 209 66 0 chr4 151197881 151198201 -33090461 - MER58B DNA MER1_type 0 341 1 2920 130 111 14 chr4 151198260 151198767 -33089895 - MER21A LTR ERV1 0 931 376 1433 131 54 39 chr4 151198772 151199000 -33089662 - MER21A LTR ERV1 -667 264 30 323 23 23 0 chr4 151199000 151199044 -33089618 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 1433 131 54 39 chr4 151199044 151199075 -33089587 - MER21A LTR ERV1 -901 30 1 288 263 42 0 chr4 151199885 151199980 -33088682 - MER115 DNA AcHobo -237 456 358 1145 97 195 0 chr4 151199986 151200181 -33088481 + LTR7 LTR ERV1 1 233 -217 601 224 168 0 chr4 151201230 151201373 -33087289 - MER5A DNA MER1_type -19 170 4 258 208 148 109 chr4 151202248 151202349 -33086313 + MLT1H LTR MaLR 444 548 -1 486 222 37 19 chr4 151202426 151202534 -33086128 - MER58C DNA MER1_type 0 215 106 248 159 23 0 chr4 151202659 151202703 -33085959 - L2 LINE L2 -18 3295 3251 348 111 0 0 chr4 151203271 151203325 -33085337 + (TCCC)n Simple_repeat Simple_repeat 4 57 0 748 134 22 73 chr4 151203398 151203577 -33085085 + Charlie5 DNA MER1_type 2416 2585 -27 1314 277 81 12 chr4 151204413 151204989 -33083673 + L2 LINE L2 2486 3093 -220 199 189 0 94 chr4 151205065 151205118 -33083544 + L2 LINE L2 3197 3244 -69 2493 88 48 13 chr4 151205309 151205683 -33082979 - HERVH LTR ERV1 -3 7710 7324 1394 139 19 0 chr4 151205683 151205899 -33082763 - HERVH LTR ERV1 -1894 5819 5600 4285 149 5 6 chr4 151205900 151206563 -33082099 - HERVH LTR ERV1 -2564 5149 4488 3230 97 7 4 chr4 151206565 151207029 -33081633 - HERVH LTR ERV1 -3720 3993 3529 582 243 74 7 chr4 151207247 151207395 -33081267 + MLT1I LTR MaLR 252 409 0 827 181 118 161 chr4 151208848 151209400 -33079262 - LTR8A LTR ERV1 -199 528 1 10037 97 45 15 chr4 151210636 151212658 -33076004 + HERVH LTR ERV1 4 2131 -5582 2184 169 42 8 chr4 151212760 151213139 -33075523 + LTR51 LTR ERV1 280 671 0 1636 229 16 8 chr4 151213164 151213544 -33075118 + MLT1C LTR MaLR 83 465 -2 1645 166 69 94 chr4 151216093 151216157 -33072505 - MLT1C LTR MaLR -3 464 400 2543 44 0 0 chr4 151216157 151216455 -33072207 + AluY SINE Alu 1 298 -13 1645 166 69 94 chr4 151216455 151216825 -33071837 - MLT1C LTR MaLR -67 400 41 1614 158 17 41 chr4 151217695 151217986 -33070676 - AluJo SINE Alu -21 291 8 783 274 126 44 chr4 151218187 151218592 -33070070 - L2 LINE L2 -4 3309 2872 675 211 18 70 chr4 151218622 151218849 -33069813 - L2 LINE L2 -589 2725 2511 777 179 114 14 chr4 151218990 151219130 -33069532 - FRAM SINE Alu -23 153 1 826 83 74 8 chr4 151219279 151219400 -33069262 - MLT1C LTR MaLR -338 129 1 182 263 0 40 chr4 151219488 151219564 -33069098 - L2 LINE L2 -92 3221 3149 180 111 0 0 chr4 151219568 151219595 -33069067 + (CATA)n Simple_repeat Simple_repeat 2 28 0 437 157 9 96 chr4 151219700 151219774 -33068888 + MER5B DNA MER1_type 74 136 -42 1881 238 38 49 chr4 151219774 151220300 -33068362 + MLT2B1 LTR ERVL 1 520 0 437 157 9 96 chr4 151220300 151220340 -33068322 + MER5B DNA MER1_type 136 178 0 1713 198 22 35 chr4 151220730 151221098 -33067564 + MLT1A2 LTR MaLR 1 363 -11 543 282 84 0 chr4 151221150 151221352 -33067310 - L2 LINE L2 -770 2544 2326 1058 127 13 0 chr4 151221396 151221554 -33067108 + MSTB LTR MaLR 267 426 0 5423 114 35 18 chr4 151221554 151222447 -33066215 - Tigger3b DNA MER2_type -81 1150 243 23 0 0 0 chr4 151223019 151223042 -33065620 + AT_rich Low_complexity Low_complexity 1 23 0 275 284 121 29 chr4 151223043 151223282 -33065380 - L1ME4a LINE L1 -24 6097 5837 400 276 159 0 chr4 151226671 151226841 -33061821 + L2 LINE L2 3111 3307 -6 181 300 20 20 chr4 151226881 151226931 -33061731 - L2 LINE L2 -84 3188 3139 2137 145 33 33 chr4 151227230 151227567 -33061095 - MER1B DNA MER1_type 0 337 1 2206 160 29 0 chr4 151227997 151228347 -33060315 + MLT1A1 LTR MaLR 6 365 0 860 277 20 20 chr4 151228440 151228689 -33059973 - MIR SINE MIR -1 261 13 270 217 142 75 chr4 151228702 151228822 -33059840 - MIR SINE MIR -13 249 122 294 279 117 41 chr4 151229072 151229269 -33059393 + HAL1 LINE L1 2207 2418 -89 602 237 110 42 chr4 151229299 151229719 -33058943 + MLT1J LTR MaLR 33 511 0 1981 252 69 30 chr4 151229916 151230669 -33057993 + L1MEc LINE L1 1050 1831 -4565 * 2578 322 79 6 chr4 151230657 151231604 -33057058 + L1M4 LINE L1 4055 5070 -1076 448 229 87 71 chr4 151231841 151232107 -33056555 + L2 LINE L2 2181 2450 -864 361 345 31 21 chr4 151232123 151232314 -33056348 - L2 LINE L2 -841 2473 2281 200 278 0 19 chr4 151232629 151232683 -33055979 + CT-rich Low_complexity Low_complexity 2 54 0 856 217 0 0 chr4 151233484 151233636 -33055026 - AluSg/x SINE Alu -4 308 157 193 317 17 0 chr4 151234421 151234481 -33054181 - L3 LINE CR1 -1 1576 1516 775 245 31 0 chr4 151234806 151234965 -33053697 + MER45A DNA AcHobo 15 178 0 257 75 25 0 chr4 151235210 151235250 -33053412 + (TA)n Simple_repeat Simple_repeat 2 42 0 248 140 0 0 chr4 151235250 151235307 -33053355 - L1MC4 LINE L1 -1339 6703 6647 185 0 40 0 chr4 151235382 151235407 -33053255 + (TA)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr4 151236206 151236227 -33052435 + AT_rich Low_complexity Low_complexity 1 21 0 3742 133 0 30 chr4 151237666 151238207 -33050455 + MER1A DNA MER1_type 2 526 -1 333 0 0 0 chr4 151238832 151238869 -33049793 + (TC)n Simple_repeat Simple_repeat 2 38 0 303 252 85 21 chr4 151239620 151239810 -33048852 + HAL1 LINE L1 2077 2326 -181 21 57 0 0 chr4 151240014 151240049 -33048613 + AT_rich Low_complexity Low_complexity 1 35 0 1605 150 91 21 chr4 151240414 151240700 -33047962 + AluJb SINE Alu 1 306 -6 440 246 8 39 chr4 151240985 151241115 -33047547 + HAL1 LINE L1 2322 2447 -60 2431 76 3 0 chr4 151241166 151241469 -33047193 + AluY SINE Alu 1 304 -7 8302 38 7 0 chr4 151241709 151243393 -33045269 - L1PA5 LINE L1 -13 6141 4430 373 305 93 5 chr4 151243484 151243696 -33044966 - L1MDa LINE L1 -827 2074 1798 342 378 97 32 chr4 151243770 151244143 -33044519 - L1MDa LINE L1 -5471 1059 663 498 228 0 18 chr4 151244197 151244311 -33044351 - MIR SINE MIR -6 256 145 192 163 0 0 chr4 151244456 151244499 -33044163 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 802 180 23 0 chr4 151246747 151246875 -33041787 - FLAM_C SINE Alu -2 131 1 390 320 90 26 chr4 151247596 151247752 -33040910 - MIR3 SINE MIR -23 185 20 1363 258 96 42 chr4 151248195 151248768 -33039894 - L1MEd LINE L1 -5061 1058 455 2419 71 0 0 chr4 151248958 151249255 -33039407 + AluY SINE Alu 1 297 -14 1617 150 153 0 chr4 151250014 151250308 -33038354 + MER44D DNA MER2_type 1 609 0 1658 172 5 93 chr4 151250733 151251111 -33037551 + MER7A DNA MER2_type 4 346 0 193 301 124 26 chr4 151252373 151252486 -33036176 - MIR3 SINE MIR -54 154 31 1797 142 39 18 chr4 151252770 151253051 -33035611 - THE1B LTR MaLR 0 364 78 9147 95 13 13 chr4 151253051 151254325 -33034337 - THE1B-int LTR MaLR -305 1275 1 2418 103 76 15 chr4 151254327 151254668 -33033994 - THE1B LTR MaLR -2 362 1 10868 186 18 9 chr4 151255319 151255589 -33033073 - L1PB1 LINE L1 -2 6865 6599 189 0 0 0 chr4 151255589 151255610 -33033052 + (TA)n Simple_repeat Simple_repeat 1 21 0 10868 186 18 9 chr4 151255610 151258428 -33030234 - L1PB1 LINE L1 -268 6599 3653 26 82 0 0 chr4 151258457 151258518 -33030144 + AT_rich Low_complexity Low_complexity 1 61 0 9801 44 5 165 chr4 151258612 151260262 -33028400 - SVA Other Other 0 1386 1 4481 178 206 6 chr4 151260263 151261315 -33027347 - L1PB1 LINE L1 -4938 1925 663 356 245 94 0 chr4 151261375 151261481 -33027181 - L1PB1 LINE L1 -6742 121 6 711 250 205 4 chr4 151261635 151261903 -33026759 - L1MC4 LINE L1 0 8042 7721 477 270 165 18 chr4 151264828 151265113 -33023549 + L2 LINE L2 2292 2618 -696 470 255 27 37 chr4 151265537 151265725 -33022937 + L2 LINE L2 3125 3310 -3 201 74 0 0 chr4 151267342 151267369 -33021293 + (TA)n Simple_repeat Simple_repeat 2 28 0 250 326 144 8 chr4 151268586 151268718 -33019944 - L2 LINE L2 0 3272 3123 2398 58 3 17 chr4 151269377 151269671 -33018991 + AluY SINE Alu 1 290 -21 368 156 96 181 chr4 151269774 151269973 -33018689 - L1MC4 LINE L1 -326 7716 7535 26 50 0 0 chr4 151270660 151270700 -33017962 + AT_rich Low_complexity Low_complexity 1 40 0 376 264 55 31 chr4 151271397 151271569 -33017093 - MIR SINE MIR -48 214 38 1807 168 0 13 chr4 151271991 151272295 -33016367 + AluJo SINE Alu 1 300 -12 416 247 81 81 chr4 151273826 151274073 -33014589 + LTR33A LTR ERVL 2 248 -275 324 218 218 8 chr4 151274106 151274239 -33014423 + LTR33A LTR ERVL 346 506 -17 391 325 31 44 chr4 151274611 151274999 -33013663 - L2 LINE L2 -430 2884 2502 524 265 147 0 chr4 151275808 151276019 -33012643 + MIR SINE MIR 8 249 -13 272 321 73 0 chr4 151276388 151276497 -33012165 - L2 LINE L2 -10 3303 3187 2476 91 0 0 chr4 151277946 151278255 -33010407 - AluY SINE Alu -2 309 1 356 313 0 50 chr4 151278444 151278604 -33010058 + MIR SINE MIR 62 213 -49 479 165 21 10 chr4 151280829 151280926 -33007736 + MER53 DNA DNA 92 189 0 796 222 12 0 chr4 151280995 151281166 -33007496 + MER5A DNA MER1_type 5 177 -12 391 277 234 21 chr4 151281186 151281374 -33007288 + MIR SINE MIR 13 240 -22 1246 202 46 14 chr4 151282652 151282934 -33005728 + AluJo SINE Alu 11 301 -11 198 0 0 0 chr4 151283354 151283376 -33005286 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 497 258 60 52 chr4 151285167 151285400 -33003262 - MIR SINE MIR 0 262 28 206 282 94 0 chr4 151285527 151285612 -33003050 + MIR SINE MIR 48 140 -122 214 313 0 0 chr4 151285716 151285783 -33002879 - L2 LINE L2 -923 2391 2325 3567 133 6 11 chr4 151285820 151286347 -33002315 - MER1A DNA MER1_type -5 524 1 1927 290 123 44 chr4 151287393 151288999 -32999663 - L2 LINE L2 -6 3307 1560 220 385 6 26 chr4 151289551 151289707 -32998955 - L2 LINE L2 -725 2589 2437 303 168 15 0 chr4 151291261 151291327 -32997335 - MLT1H LTR MaLR -2 547 487 439 275 80 69 chr4 151291457 151291620 -32997042 - MLT1H LTR MaLR -238 311 96 2095 141 3 0 chr4 151291620 151291919 -32996743 + AluJo SINE Alu 1 300 -12 439 275 80 69 chr4 151291919 151292016 -32996646 - MLT1H LTR MaLR -453 96 2 778 252 86 11 chr4 151294324 151294602 -32994060 + L1ME4a LINE L1 5571 5869 -252 458 227 121 0 chr4 151294630 151294762 -32993900 + MIR SINE MIR 95 242 -20 224 336 17 60 chr4 151295299 151295415 -32993247 - L2 LINE L2 -1 3271 3161 736 275 78 39 chr4 151295728 151296113 -32992549 - L2 LINE L2 -1257 2057 1658 415 77 15 15 chr4 151296128 151296193 -32992469 + L1MB1 LINE L1 6103 6167 -1 3089 266 90 58 chr4 151296253 151297901 -32990761 + HAL1 LINE L1 1 1701 -806 446 257 101 52 chr4 151297943 151298231 -32990431 + HAL1 LINE L1 1871 2172 -335 833 157 0 8 chr4 151299118 151299252 -32989410 + FLAM_C SINE Alu 1 133 0 218 338 106 21 chr4 151299511 151299653 -32989009 + MIR3 SINE MIR 45 198 -10 272 323 10 0 chr4 151299960 151300056 -32988606 + MIR SINE MIR 63 159 -103 2132 86 14 7 chr4 151300058 151300336 -32988326 + AluY SINE Alu 17 296 -15 2653 43 0 0 chr4 151300336 151300638 -32988024 + AluY SINE Alu 1 302 -9 1354 203 62 24 chr4 151302517 151302857 -32985805 - L1MC2 LINE L1 -2 6342 5990 1354 213 88 0 chr4 151303063 151303382 -32985280 + MER7A DNA MER2_type 2 346 0 267 240 25 66 chr4 151305595 151305716 -32982946 + L2 LINE L2 3186 3301 -12 2153 97 13 10 chr4 151305801 151306100 -32982562 - AluSx SINE Alu -12 300 1 313 270 45 9 chr4 151307171 151307282 -32981380 - L1MCa LINE L1 -4313 2113 1999 1106 77 0 0 chr4 151307285 151307428 -32981234 - AluY SINE Alu -7 304 162 30 0 0 0 chr4 151307524 151307554 -32981108 + AT_rich Low_complexity Low_complexity 1 30 0 3820 135 28 6 chr4 151307583 151308218 -32980444 - L1PB4 LINE L1 -4 6152 5504 263 323 137 0 chr4 151308549 151308710 -32979952 - MIR SINE MIR -78 184 2 1831 128 0 82 chr4 151309129 151309457 -32979205 + AluJo SINE Alu 3 303 -9 258 252 68 0 chr4 151310843 151310946 -32977716 - L2 LINE L2 -22 3250 3141 316 366 91 21 chr4 151311999 151312428 -32976234 - L2 LINE L2 0 3272 2814 913 205 121 96 chr4 151312516 151312872 -32975790 - MLT1A2 LTR MaLR 0 374 10 288 345 147 28 chr4 151312877 151313266 -32975396 - L2 LINE L2 -654 2660 2226 218 337 53 11 chr4 151313273 151313368 -32975294 - L2 LINE L2 -1 3271 3173 306 287 44 61 chr4 151313432 151313613 -32975049 - L2 LINE L2 -235 3037 2860 279 235 128 15 chr4 151314115 151314247 -32974415 + MIR SINE MIR 39 183 -64 2120 109 0 16 chr4 151314368 151314680 -32973982 - AluSx SINE Alu 0 312 6 290 217 133 12 chr4 151316703 151316786 -32971876 + MER58 DNA MER1_type 2 94 -121 1848 196 22 17 chr4 151318478 151318835 -32969827 + MLT1A1 LTR MaLR 7 365 0 1533 118 35 4 chr4 151319576 151319805 -32968857 + MER46A DNA MER2_type 1 236 0 2185 107 0 10 chr4 151321298 151321608 -32967054 + AluSg SINE Alu 1 307 -3 189 0 0 0 chr4 151322033 151322054 -32966608 + (GA)n Simple_repeat Simple_repeat 2 22 0 265 252 159 9 chr4 151322429 151322536 -32966126 - HAL1b LINE L1 -7 1341 1219 21 57 0 0 chr4 151322609 151322644 -32966018 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr4 151322689 151322714 -32965948 + AT_rich Low_complexity Low_complexity 1 25 0 1999 177 62 71 chr4 151322730 151323266 -32965396 - L1MB7 LINE L1 -326 5858 5328 566 217 179 9 chr4 151325834 151326046 -32962616 + L1ME4a LINE L1 5870 6117 -4 332 200 62 0 chr4 151329673 151329753 -32958909 - L2 LINE L2 -5 3308 3224 180 250 15 73 chr4 151331723 151331791 -32956871 + L2 LINE L2 3208 3271 -1 459 286 117 6 chr4 151334243 151334414 -32954248 + MIR SINE MIR 40 229 -33 322 48 0 0 chr4 151336826 151336868 -32951794 - MADE1 DNA Mariner 0 80 39 1829 147 10 7 chr4 151340532 151340832 -32947830 + AluJb SINE Alu 1 301 -11 567 194 169 0 chr4 151344827 151344951 -32943711 + MIR SINE MIR 66 210 -52 181 365 113 6 chr4 151345135 151345294 -32943368 + L2 LINE L2 3097 3272 0 1133 254 92 35 chr4 151347195 151347621 -32941041 + MLT1H LTR MaLR 80 529 -20 242 326 74 22 chr4 151347905 151348040 -32940622 - MIR3 SINE MIR -25 183 42 26 50 0 0 chr4 151349915 151349955 -32938707 + AT_rich Low_complexity Low_complexity 1 40 0 541 259 189 5 chr4 151352251 151352463 -32936199 - MIR SINE MIR -10 252 2 312 91 0 0 chr4 151352472 151352516 -32936146 + (GA)n Simple_repeat Simple_repeat 1 44 0 769 278 59 22 chr4 151352542 151352815 -32935847 - L1MC4a LINE L1 -1935 5873 5591 220 309 92 42 chr4 151352817 151353079 -32935583 + L2 LINE L2 2614 2888 -426 231 315 11 33 chr4 151353291 151353383 -32935279 + L2 LINE L2 3224 3313 0 307 243 289 13 chr4 151354798 151354950 -32933712 - L2 LINE L2 -6 3307 3114 312 304 0 0 chr4 151355401 151355480 -32933182 + CT-rich Low_complexity Low_complexity 3 81 0 238 284 136 0 chr4 151356688 151356776 -32931886 + MIR SINE MIR 137 236 -26 504 280 109 0 chr4 151357147 151357322 -32931340 - MIR SINE MIR -50 212 19 698 229 109 25 chr4 151357528 151357729 -32930933 - MIR SINE MIR -9 253 36 291 253 84 11 chr4 151357882 151357977 -32930685 + MIR SINE MIR 72 173 -89 279 398 8 0 chr4 151359566 151359694 -32928968 + L2 LINE L2 2915 3043 -229 1690 186 0 0 chr4 151361226 151361532 -32927130 + AluJo SINE Alu 5 310 -2 2582 121 55 9 chr4 151362140 151362562 -32926100 + L1MA4 LINE L1 5860 6300 0 186 99 55 44 chr4 151362930 151363021 -32925641 + (TA)n Simple_repeat Simple_repeat 2 93 0 264 30 0 0 chr4 151363385 151363418 -32925244 + (TTG)n Simple_repeat Simple_repeat 2 34 0 1521 97 60 0 chr4 151364226 151364443 -32924219 + MER30 DNA MER1_type 1 230 0 199 277 0 31 chr4 151364454 151364519 -32924143 - MIR SINE MIR -46 216 154 832 159 22 0 chr4 151365678 151365816 -32922846 - MER5A DNA MER1_type -1 188 48 303 28 0 0 chr4 151367522 151367558 -32921104 + (CA)n Simple_repeat Simple_repeat 1 36 0 368 367 25 13 chr4 151368251 151368409 -32920253 + L2 LINE L2 2890 3049 -223 4406 252 116 12 chr4 151368562 151370151 -32918511 - L1MEc LINE L1 -834 5381 3627 * 11113 230 44 21 chr4 151370141 151374152 -32914510 - L1MB2 LINE L1 -1 6406 2296 496 288 45 82 chr4 151374197 151374489 -32914173 - L1MB2 LINE L1 -5609 694 414 2835 233 76 5 chr4 151374503 151375349 -32913313 - L1MEc LINE L1 -2584 3631 2726 519 253 42 42 chr4 151375350 151375635 -32913027 - L1MEc LINE L1 -4248 2148 1864 223 245 20 0 chr4 151376712 151376761 -32911901 - L2 LINE L2 -2 3270 3221 182 299 208 0 chr4 151378101 151378178 -32910484 + L2 LINE L2 3178 3270 -2 362 175 0 0 chr4 151379824 151379887 -32908775 - MER112 DNA MER1_type -106 154 92 21 36 0 0 chr4 151381471 151381499 -32907163 + AT_rich Low_complexity Low_complexity 1 28 0 263 224 171 0 chr4 151381974 151382050 -32906612 - L2 LINE L2 -8 3264 3176 499 260 163 31 chr4 151382216 151382443 -32906219 + MIR SINE MIR 6 262 0 189 0 0 0 chr4 151382486 151382507 -32906155 + (A)n Simple_repeat Simple_repeat 1 21 0 334 239 80 0 chr4 151383464 151383552 -32905110 - LTR67 LTR ERVL -35 522 428 297 300 112 72 chr4 151383623 151383900 -32904762 - L3b LINE CR1 -143 1440 1153 21 0 0 0 chr4 151385474 151385495 -32903167 + AT_rich Low_complexity Low_complexity 1 21 0 347 255 117 0 chr4 151385591 151385685 -32902977 - MER91A DNA MER1_type -2 194 90 648 288 29 6 chr4 151385704 151385874 -32902788 - MER91A DNA MER1_type -22 174 1 619 245 160 11 chr4 151385971 151386159 -32902503 + MLT1J LTR MaLR 1 216 -295 333 167 0 61 chr4 151386285 151386351 -32902311 + L2 LINE L2 3247 3308 -5 425 209 183 0 chr4 151386533 151386648 -32902014 + MER112 DNA MER1_type 112 247 -13 245 246 66 107 chr4 151387613 151387735 -32900927 + MIR3 SINE MIR 88 204 -4 2369 91 0 0 chr4 151388129 151388425 -32900237 - AluSx SINE Alu -16 296 1 180 77 0 0 chr4 151390792 151390818 -32897844 + (TG)n Simple_repeat Simple_repeat 2 27 0 291 308 0 0 chr4 151391363 151391454 -32897208 + LTR16A1 LTR ERVL 341 431 -26 226 386 0 0 chr4 151391534 151391635 -32897027 - Charlie7 DNA MER1_type -2511 101 1 248 335 51 51 chr4 151391649 151392058 -32896604 - L2 LINE L2 -562 2752 2344 308 388 31 23 chr4 151392213 151392342 -32896320 - L2 LINE L2 -18 3254 3125 704 239 12 89 chr4 151392373 151392620 -32896042 + MIR SINE MIR 29 256 -6 195 212 0 0 chr4 151392626 151392659 -32896003 - MIR SINE MIR -13 249 217 270 0 0 0 chr4 151393412 151393442 -32895220 + (CA)n Simple_repeat Simple_repeat 2 31 0 1306 116 0 0 chr4 151394085 151394266 -32894396 + AluY SINE Alu 128 308 -3 1266 196 50 50 chr4 151394268 151394610 -32894052 + L1MB8 LINE L1 5302 5643 -541 1032 201 149 62 chr4 151394614 151394678 -32893984 - MER31B LTR ERV1 -7 459 402 2400 117 37 0 chr4 151394678 151395029 -32893633 + THE1B LTR MaLR 1 364 0 1032 201 149 62 chr4 151395029 151395386 -32893276 - MER31B LTR ERV1 -64 402 1 1255 175 124 0 chr4 151395386 151395677 -32892985 + L1MB8 LINE L1 5642 5968 -210 489 322 48 18 chr4 151396323 151396550 -32892112 + MIR SINE MIR 3 236 -26 422 269 76 8 chr4 151397047 151397166 -32891496 - L2 LINE L2 -10 3303 3177 452 229 21 0 chr4 151397503 151397599 -32891063 + L2 LINE L2 2704 2801 -513 499 257 59 32 chr4 151397734 151397921 -32890741 + L2 LINE L2 3119 3310 -3 273 266 4 8 chr4 151397919 151397997 -32890665 + MIR SINE MIR 92 169 -39 * 1003 196 12 0 chr4 151398458 151398631 -32890031 + MER5A DNA MER1_type 2 176 -13 309 249 44 44 chr4 151398764 151398945 -32889717 - L1MEd LINE L1 -4915 1204 1024 26 30 0 0 chr4 151399705 151399738 -32888924 + AT_rich Low_complexity Low_complexity 1 33 0 230 186 0 116 chr4 151400200 151400286 -32888376 - L1ME1 LINE L1 -127 6039 5964 1256 263 75 42 chr4 151400327 151401061 -32887601 - L1MEc LINE L1 -4922 1474 717 1529 104 0 14 chr4 151401061 151401281 -32887381 - AluY SINE Alu -3 308 92 357 309 114 8 chr4 151401803 151401926 -32886736 - L2 LINE L2 -20 3252 3117 10270 32 0 0 chr4 151402935 151404178 -32884484 - L1P LINE L1 -3531 2615 1373 591 243 126 5 chr4 151404446 151404660 -32884002 - MIR SINE MIR -10 252 13 324 267 18 0 chr4 151404868 151405033 -32883629 - L1M4 LINE L1 -2907 3239 3072 4801 174 36 4 chr4 151405078 151406139 -32882523 + L1MB2 LINE L1 5077 6169 -2 272 339 46 30 chr4 151406866 151407102 -32881560 + L2 LINE L2 2767 3008 -264 378 345 28 0 chr4 151407369 151407511 -32881151 - MIR SINE MIR -60 202 57 414 100 0 0 chr4 151407515 151407575 -32881087 + (TTCTG)n Simple_repeat Simple_repeat 4 63 0 562 162 0 10 chr4 151407575 151407674 -32880988 - FRAM SINE Alu -26 150 53 212 283 0 17 chr4 151408617 151408677 -32879985 + MIR SINE MIR 46 104 -158 1297 238 40 3 chr4 151408680 151409003 -32879659 - MLT1E3 LTR MaLR 0 624 290 406 361 33 22 chr4 151409027 151409210 -32879452 - MIR SINE MIR -65 197 13 281 282 14 0 chr4 151409339 151409410 -32879252 + L2 LINE L2 3242 3313 0 375 216 27 60 chr4 151409425 151409610 -32879052 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 628 88 29 0 chr4 151409805 151409907 -32878755 + AluY SINE Alu 206 310 -1 474 311 81 14 chr4 151410848 151411057 -32877605 - MIR SINE MIR -3 259 37 338 299 95 39 chr4 151412077 151412308 -32876354 + MARNA DNA Mariner 301 544 -42 22 0 0 0 chr4 151412514 151412536 -32876126 + AT_rich Low_complexity Low_complexity 1 22 0 873 94 8 0 chr4 151413379 151413506 -32875156 + MER41B LTR ERV1 481 608 -27 24 77 0 0 chr4 151413690 151413742 -32874920 + AT_rich Low_complexity Low_complexity 1 52 0 330 91 0 0 chr4 151414525 151414580 -32874082 + AluSp/q SINE Alu 247 301 -2 254 235 12 12 chr4 151414592 151414673 -32873989 - L1ME4a LINE L1 -70 6051 5971 2271 110 10 0 chr4 151414673 151414982 -32873680 - AluSx SINE Alu 0 312 1 4565 195 48 10 chr4 151415049 151416110 -32872552 + L1P LINE L1 4179 5279 -867 * 8079 195 9 28 chr4 151416106 151417589 -32871073 - L1 LINE L1 -1884 4262 2822 2082 131 0 0 chr4 151417589 151417871 -32870791 - AluSx SINE Alu -9 303 22 8079 195 9 28 chr4 151417871 151418301 -32870361 - L1 LINE L1 -3324 2822 2385 1058 45 0 0 chr4 151420771 151420905 -32867757 + L1PA4 LINE L1 6021 6154 -1 273 206 48 16 chr4 151421828 151421891 -32866771 - MER5A DNA MER1_type -116 73 9 197 300 75 67 chr4 151422032 151422152 -32866510 - L2 LINE L2 -24 3289 3169 1850 148 10 10 chr4 151422944 151423241 -32865421 + AluSx SINE Alu 1 297 -15 595 314 84 16 chr4 151423492 151423748 -32864914 - L2 LINE L2 -220 3052 2782 322 287 116 18 chr4 151423742 151423906 -32864756 - L2 LINE L2 -980 2334 2155 * 257 353 35 0 chr4 151424387 151424472 -32864190 - L2 LINE L2 0 3272 3185 16257 110 39 10 chr4 151424736 151427373 -32861289 - L1PBa LINE L1 -4151 2712 1 2938 120 77 2 chr4 151427623 151428091 -32860571 + L1PA16 LINE L1 5626 6128 -38 341 321 76 22 chr4 151428216 151428400 -32860262 - L2 LINE L2 -693 2621 2428 916 269 58 0 chr4 151428408 151428650 -32860012 + MIR SINE MIR 2 257 -5 254 345 14 14 chr4 151428666 151428805 -32859857 - L2 LINE L2 -888 2426 2288 2423 86 0 3 chr4 151429306 151429608 -32859054 - AluSq SINE Alu -11 302 2 309 269 40 114 chr4 151429784 151429959 -32858703 + MER5A DNA MER1_type 24 185 -4 623 195 101 95 chr4 151430015 151430042 -32858620 - MER5A DNA MER1_type -18 171 146 1844 168 27 24 chr4 151430042 151430376 -32858286 + MER1B DNA MER1_type 3 337 0 623 195 101 95 chr4 151430376 151430405 -32858257 - MER5A DNA MER1_type -43 146 119 1821 165 10 3 chr4 151430405 151430702 -32857960 + AluJb SINE Alu 1 299 -13 623 195 101 95 chr4 151430702 151430813 -32857849 - MER5A DNA MER1_type -70 119 2 180 0 0 0 chr4 151430991 151431011 -32857651 + (A)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr4 151431123 151431151 -32857511 + AT_rich Low_complexity Low_complexity 1 28 0 442 110 0 0 chr4 151432509 151432582 -32856080 + L1MA5A LINE L1 5984 6056 -241 1833 150 4 0 chr4 151432689 151432963 -32855699 - AluSq SINE Alu -38 275 1 195 69 0 0 chr4 151433274 151433303 -32855359 + (TA)n Simple_repeat Simple_repeat 2 30 0 1467 205 0 44 chr4 151433604 151433902 -32854760 - AluJb SINE Alu -27 285 1 210 209 15 15 chr4 151433971 151434038 -32854624 + A-rich Low_complexity Low_complexity 4 70 0 680 258 84 0 chr4 151434395 151434573 -32854089 + MER58C DNA MER1_type 15 207 -8 646 179 71 92 chr4 151434589 151434785 -32853877 + MER20 DNA MER1_type 1 192 -27 2017 188 5 38 chr4 151434785 151435263 -32853399 + MER31B LTR ERV1 1 464 -2 2467 61 0 3 chr4 151435574 151435871 -32852791 + AluY SINE Alu 1 296 -15 2642 100 14 3 chr4 151436632 151437001 -32851661 - THE1C LTR MaLR 0 375 3 814 236 61 14 chr4 151437490 151437702 -32850960 + MIR SINE MIR 20 241 -21 1143 192 25 72 chr4 151438218 151438597 -32850065 - L1ME LINE L1 -419 5750 5398 879 169 13 63 chr4 151438637 151438874 -32849788 - L1M3 LINE L1 -699 5481 5257 1796 200 33 23 chr4 151438884 151439074 -32849588 + L1M4 LINE L1 1038 1225 -5317 1473 168 63 66 chr4 151439074 151439396 -32849266 + AluJo SINE Alu 1 321 0 1796 200 33 23 chr4 151439396 151439724 -32848938 + L1M4 LINE L1 1225 1562 -4980 3368 147 27 43 chr4 151440096 151440717 -32847945 - LTR36 LTR ERV1 0 611 1 9282 26 0 240 chr4 151441953 151443777 -32844885 + SVA Other Other 1 1386 0 225 290 136 71 chr4 151444993 151445162 -32843500 + MIR3 SINE MIR 5 184 -24 2248 87 28 0 chr4 151445212 151445500 -32843162 - AluSg SINE Alu -14 296 1 356 215 149 0 chr4 151445862 151445969 -32842693 + L2 LINE L2 3187 3309 -4 1976 156 0 3 chr4 151447504 151447805 -32840857 + AluJb SINE Alu 1 300 -12 405 0 0 0 chr4 151447805 151447850 -32840812 + (CATA)n Simple_repeat Simple_repeat 2 46 0 349 236 79 50 chr4 151448950 151449090 -32839572 + L1ME LINE L1 5677 5820 -301 1591 220 86 52 chr4 151449114 151450424 -32838238 + L1ME2 LINE L1 4796 6134 -30 974 163 64 114 chr4 151450549 151450813 -32837849 + AluJo SINE Alu 1 251 -61 287 146 18 0 chr4 151450831 151450886 -32837776 + GA-rich Low_complexity Low_complexity 1 56 0 2219 134 33 0 chr4 151451075 151451441 -32837221 - Tigger3(Golem) DNA MER2_type -2 3027 2650 244 288 0 0 chr4 151451542 151451601 -32837061 - Tigger3(Golem) DNA MER2_type -2967 62 4 24 32 0 0 chr4 151451720 151451751 -32836911 + AT_rich Low_complexity Low_complexity 1 31 0 42424 36 1 4 chr4 151451753 151457917 -32830745 - L1PA3 LINE L1 -5 6150 2 229 319 76 42 chr4 151458192 151458336 -32830326 + L2 LINE L2 3161 3309 -4 453 213 9 9 chr4 151458672 151458780 -32829882 + L1MD2 LINE L1 6236 6343 -16 1698 175 10 16 chr4 151458803 151459106 -32829556 + AluJo SINE Alu 1 301 -11 264 30 0 0 chr4 151459423 151459456 -32829206 + (CA)n Simple_repeat Simple_repeat 2 34 0 2372 78 7 10 chr4 151459747 151460054 -32828608 + AluY SINE Alu 1 306 -5 1758 160 0 0 chr4 151461811 151462079 -32826583 + AluJo SINE Alu 24 291 -21 23 0 0 0 chr4 151462308 151462331 -32826331 + AT_rich Low_complexity Low_complexity 1 23 0 2346 180 21 12 chr4 151462406 151462834 -32825828 + MSTB1 LTR MaLR 1 432 0 953 184 84 5 chr4 151463004 151463194 -32825468 + AluJo SINE Alu 1 205 -107 29 47 0 0 chr4 151463925 151463968 -32824694 + AT_rich Low_complexity Low_complexity 1 43 0 1046 98 8 0 chr4 151464222 151464537 -32824125 + AluSx SINE Alu 1 316 0 420 300 131 31 chr4 151464564 151464947 -32823715 - L1ME1 LINE L1 -314 5852 5432 588 234 128 102 chr4 151464947 151465593 -32823069 + L1MC4 LINE L1 7380 8042 0 239 225 139 20 chr4 151465664 151465815 -32822847 - L1ME1 LINE L1 -1630 4516 4348 5182 130 7 7 chr4 151465959 151466796 -32821866 - L1MC1 LINE L1 -17 6316 5480 278 200 0 0 chr4 151468499 151468549 -32820113 - 7SK RNA RNA -9 184 135 1503 159 58 12 chr4 151468808 151469066 -32819596 + AluJb SINE Alu 33 302 -10 443 254 96 42 chr4 151470277 151470537 -32818125 + L1ME LINE L1 5525 5798 -323 230 227 30 0 chr4 151470819 151470885 -32817777 + (TA)n Simple_repeat Simple_repeat 2 69 0 312 27 0 0 chr4 151472071 151472108 -32816554 + (TG)n Simple_repeat Simple_repeat 2 38 0 2253 102 3 0 chr4 151473162 151473455 -32815207 - AluSx SINE Alu -18 294 1 268 273 0 0 chr4 151474622 151474677 -32813985 - L2 LINE L2 -14 3299 3245 901 171 33 0 chr4 151474771 151474923 -32813739 + FAM SINE Alu 7 163 -22 227 304 117 18 chr4 151475008 151475179 -32813483 - L2 LINE L2 -215 3057 2870 2266 107 0 0 chr4 151475809 151476109 -32812553 - AluSg SINE Alu -10 300 1 227 291 23 0 chr4 151477677 151477763 -32810899 - Charlie7 DNA MER1_type -2518 94 7 764 289 50 25 chr4 151478400 151478642 -32810020 + MIR SINE MIR 4 251 -11 21 71 0 0 chr4 151479254 151479296 -32809366 + AT_rich Low_complexity Low_complexity 1 42 0 212 383 101 10 chr4 151480391 151480600 -32808062 + L3b LINE CR1 1110 1337 -246 214 27 0 54 chr4 151481543 151481580 -32807082 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1870 128 11 11 chr4 151481586 151481867 -32806795 - AluJo SINE Alu -30 282 2 22 0 0 0 chr4 151482454 151482476 -32806186 + AT_rich Low_complexity Low_complexity 1 22 0 300 340 142 4 chr4 151482968 151483200 -32805462 - L2 LINE L2 -1524 1790 1527 251 269 156 62 chr4 151483457 151483617 -32805045 + MIR3 SINE MIR 30 204 -4 22 0 0 0 chr4 151484690 151484712 -32803950 + AT_rich Low_complexity Low_complexity 1 22 0 493 257 131 19 chr4 151485849 151486063 -32802599 + L1MC4a LINE L1 5701 5938 -1870 317 226 0 0 chr4 151486777 151486839 -32801823 + Charlie1 DNA MER1_type 1 62 -2699 1923 134 10 7 chr4 151487004 151487322 -32801340 - AluSx SINE Alu 0 312 1 573 225 175 1 chr4 151491329 151491508 -32797154 - MIR SINE MIR -3 259 54 218 32 32 0 chr4 151491724 151491755 -32796907 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 186 43 0 0 chr4 151492712 151492735 -32795927 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 7037 56 10 0 chr4 151492738 151494304 -32794358 - L1PA6 LINE L1 0 6154 4579 1090 248 104 13 chr4 151494446 151494821 -32793841 + LTR16A LTR ERVL 25 433 -17 1778 102 35 3 chr4 151495193 151495478 -32793184 + L1MA1 LINE L1 6009 6302 0 1959 105 17 0 chr4 151495769 151496063 -32792599 - MER41B LTR ERV1 -2 633 335 985 100 0 0 chr4 151496064 151496194 -32792468 - AluSx SINE Alu -9 303 174 2962 143 20 9 chr4 151496194 151496732 -32791930 + LTR10A LTR ERV1 1 544 -65 1333 124 0 0 chr4 151496759 151496936 -32791726 - AluSx SINE Alu -135 177 1 2009 103 3 38 chr4 151496936 151497256 -32791406 - MER41A LTR ERV1 -245 309 1 414 318 18 21 chr4 151497439 151497638 -32791024 + MIR SINE MIR 26 224 -38 2345 108 0 0 chr4 151497638 151497944 -32790718 - AluSx SINE Alu -6 306 1 414 318 18 21 chr4 151497944 151497955 -32790707 + MIR SINE MIR 224 234 -28 425 287 32 50 chr4 151498887 151499078 -32789584 + L2 LINE L2 2977 3241 -31 2696 167 28 53 chr4 151499078 151499646 -32789016 - MLT2B3 LTR ERVL 0 554 1 425 287 32 50 chr4 151499646 151499677 -32788985 + L2 LINE L2 3241 3271 -1 2491 81 0 0 chr4 151499900 151500210 -32788452 + AluY SINE Alu 1 310 -1 1432 171 16 8 chr4 151500492 151500744 -32787918 - AluJo SINE Alu -20 292 39 339 299 56 6 chr4 151501319 151501465 -32787197 + MIR3 SINE MIR 57 208 0 306 213 107 57 chr4 151501657 151501779 -32786883 + L1ME LINE L1 5541 5668 -453 993 239 39 28 chr4 151502072 151502327 -32786335 + MIR SINE MIR 5 262 0 523 231 150 7 chr4 151502425 151502572 -32786090 - MIR SINE MIR -94 168 1 878 217 205 8 chr4 151503158 151503421 -32785241 - MER61A LTR ERV1 -28 315 1 182 189 27 0 chr4 151504117 151504154 -32784508 - L2 LINE L2 -1 3312 3275 1934 122 63 0 chr4 151505759 151506045 -32782617 - AluSx SINE Alu -8 304 1 458 263 15 29 chr4 151506797 151506934 -32781728 - MER5A DNA MER1_type -11 178 44 803 253 59 32 chr4 151506955 151507208 -32781454 - MIR SINE MIR 0 262 3 4745 187 50 15 chr4 151507670 151508168 -32780494 + L1MD2 LINE L1 5076 5555 -804 1847 148 19 19 chr4 151508168 151508479 -32780183 + AluJb SINE Alu 1 311 -1 4745 187 50 15 chr4 151508479 151509224 -32779438 + L1MD2 LINE L1 5555 6351 -8 375 307 35 10 chr4 151509282 151509484 -32779178 + L1MC/D LINE L1 5540 5746 -2062 279 246 15 0 chr4 151509570 151509635 -32779027 - L2 LINE L2 0 3313 3248 243 215 0 0 chr4 151509759 151509824 -32778838 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 374 301 77 29 chr4 151510030 151510108 -32778554 - L1ME LINE L1 -346 5775 5702 1822 160 13 7 chr4 151510108 151510408 -32778254 - AluJo SINE Alu -10 302 1 374 301 77 29 chr4 151510408 151510601 -32778061 - L1ME LINE L1 -419 5702 5491 183 243 136 58 chr4 151510933 151511036 -32777626 + MIR SINE MIR 152 262 0 268 278 0 42 chr4 151511078 151511150 -32777512 - MIR3 SINE MIR -33 175 107 1035 164 0 91 chr4 151511897 151512147 -32776515 - AluJo SINE Alu 0 314 85 2277 66 28 0 chr4 151512316 151512633 -32776029 + THE1A LTR MaLR 1 326 -29 403 274 0 29 chr4 151513504 151513606 -32775056 - L2 LINE L2 -19 3294 3196 180 111 0 0 chr4 151513780 151513807 -32774855 + (A)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr4 151514375 151514396 -32774266 + AT_rich Low_complexity Low_complexity 1 21 0 413 247 0 31 chr4 151514405 151514571 -32774091 - MIR SINE MIR -10 252 20 543 268 0 16 chr4 151515423 151515550 -32773112 + MIR SINE MIR 25 149 -113 310 260 41 71 chr4 151517484 151517653 -32771009 + L2 LINE L2 3120 3283 -30 31691 105 18 63 chr4 151518455 151519145 -32769517 - L1PA7 LINE L1 0 6154 5434 2505 65 0 0 chr4 151519145 151519438 -32769224 - AluY SINE Alu -18 293 1 31691 105 18 63 chr4 151519438 151521581 -32767081 - L1PA7 LINE L1 -720 5434 3195 2360 81 10 0 chr4 151521581 151521877 -32766785 - AluY SINE Alu -12 299 1 31691 105 18 63 chr4 151521877 151525492 -32763170 - L1PA7 LINE L1 -2959 3195 12 943 223 73 67 chr4 151525760 151526087 -32762575 + MER46C DNA MER2_type 2 330 -8 1159 261 123 31 chr4 151526367 151526788 -32761874 - LTR16B LTR ERVL -2 462 3 406 217 76 0 chr4 151526962 151527054 -32761608 - MLT1I LTR MaLR -1 408 310 1077 215 39 56 chr4 151527132 151527416 -32761246 - MLT1I LTR MaLR -121 288 10 285 236 45 11 chr4 151527430 151527519 -32761143 - LTR33 LTR ERVL 0 521 430 681 237 21 46 chr4 151527520 151527714 -32760948 - MLT1G LTR MaLR 0 590 402 788 247 50 60 chr4 151527744 151528027 -32760635 - MLT1G LTR MaLR -297 293 14 704 293 47 4 chr4 151528094 151528347 -32760315 - LTR33 LTR ERVL -236 285 22 475 224 26 87 chr4 151528684 151528812 -32759850 + MIR3 SINE MIR 5 117 -125 2469 97 63 26 chr4 151528812 151529163 -32759499 - THE1B LTR MaLR 0 364 1 475 224 26 87 chr4 151529163 151529232 -32759430 + MIR3 SINE MIR 117 189 -53 2254 98 0 7 chr4 151530037 151530332 -32758330 + AluSg SINE Alu 1 293 -17 225 352 23 0 chr4 151531087 151531215 -32757447 + L2 LINE L2 2924 3054 -218 796 275 45 0 chr4 151531364 151531542 -32757120 + MER119 DNA MER1_type 1 186 -397 2242 112 0 0 chr4 151531573 151531867 -32756795 + AluSx SINE Alu 1 294 -18 26 0 0 0 chr4 151531870 151531896 -32756766 + AT_rich Low_complexity Low_complexity 1 26 0 320 238 0 38 chr4 151531896 151531976 -32756686 + MER119 DNA MER1_type 208 284 -299 434 258 148 31 chr4 151534599 151534828 -32753834 + MIR SINE MIR 7 262 0 224 195 0 0 chr4 151534999 151535040 -32753622 + T-rich Low_complexity Low_complexity 1 180 0 2284 129 0 0 chr4 151535040 151535351 -32753311 - AluSx SINE Alu 0 352 1 369 279 165 0 chr4 151535449 151535607 -32753055 - MER5A DNA MER1_type -5 184 1 814 214 78 21 chr4 151537056 151537248 -32751414 + MIR SINE MIR 28 230 -32 252 86 0 0 chr4 151538076 151538111 -32750551 + (TG)n Simple_repeat Simple_repeat 2 36 0 202 215 46 62 chr4 151538778 151538843 -32749819 + L2 LINE L2 3209 3272 0 545 285 54 32 chr4 151539010 151539196 -32749466 - MIR3 SINE MIR -14 194 5 2113 138 0 3 chr4 151539383 151539688 -32748974 - AluSx SINE Alu -8 304 1 424 247 11 11 chr4 151540011 151540104 -32748558 - MER5B DNA MER1_type -85 93 1 503 229 147 25 chr4 151540701 151540858 -32747804 - MER5B DNA MER1_type -2 176 1 2235 121 0 0 chr4 151540887 151541184 -32747478 + AluSx SINE Alu 1 297 -15 2002 137 0 20 chr4 151541193 151541499 -32747163 + AluJb SINE Alu 1 300 -12 1067 251 22 0 chr4 151641958 151642181 -32646481 + MER82 DNA MER2_type 425 652 -1 1330 221 63 8 chr4 151642194 151642561 -32646101 + L1M4 LINE L1 4352 4738 -1408 2320 185 24 16 chr4 151642565 151642991 -32645671 - Tigger2a DNA MER2_type 0 434 6 306 296 139 47 chr4 151643404 151643576 -32645086 + L1ME3A LINE L1 5963 6150 -20 2323 133 38 0 chr4 151644306 151644674 -32643988 - LOR1a LTR ERV1 -115 382 1 458 241 65 9 chr4 151644674 151644781 -32643881 - MER65C LTR ERV1 -346 115 3 198 194 16 97 chr4 151645805 151645867 -32642795 + L2 LINE L2 3215 3271 -1 1971 152 0 7 chr4 151645895 151646197 -32642465 + AluJb SINE Alu 1 300 -12 975 128 7 14 chr4 151646413 151646554 -32642108 + FRAM SINE Alu 17 156 -20 1109 141 0 17 chr4 151646774 151646951 -32641711 - AluSg/x SINE Alu -18 294 121 1797 151 24 24 chr4 151647090 151647388 -32641274 - AluJo SINE Alu -10 302 5 497 123 0 0 chr4 151647417 151647482 -32641180 - AluJ/FLAM SINE Alu -247 65 1 1862 172 0 0 chr4 151647485 151647776 -32640886 - AluJb SINE Alu -21 291 1 1116 171 76 9 chr4 151647781 151648087 -32640575 - L1M2 LINE L1 -749 5397 5158 2313 123 82 53 chr4 151648259 151648502 -32640160 - MSTA LTR MaLR 0 428 167 2345 94 3 0 chr4 151648502 151648801 -32639861 + AluSp SINE Alu 1 300 -13 2313 123 82 53 chr4 151648801 151648973 -32639689 - MSTA LTR MaLR -261 167 1 828 304 64 38 chr4 151648981 151649405 -32639257 + L2 LINE L2 2365 2799 -515 286 135 154 0 chr4 151649415 151649467 -32639195 - U6 snRNA snRNA 0 107 48 1878 125 23 0 chr4 151649709 151649973 -32638689 - AluSx SINE Alu -38 274 5 1977 207 32 144 chr4 151650250 151650265 -32638397 + L1M4 LINE L1 3600 3615 -2531 2218 129 0 0 chr4 151650265 151650568 -32638094 + AluSx SINE Alu 1 303 -9 1977 207 32 144 chr4 151650568 151650822 -32637840 + L1M4 LINE L1 3615 3896 -2250 1501 154 54 57 chr4 151650822 151651120 -32637542 + AluJb SINE Alu 5 301 -11 1977 207 32 144 chr4 151651120 151651671 -32636991 + L1M4 LINE L1 3896 4329 -1817 326 309 62 76 chr4 151651790 151652000 -32636662 - L2 LINE L2 -115 3157 2951 2298 109 0 0 chr4 151652202 151652504 -32636158 - AluSg SINE Alu -8 302 1 2196 112 0 13 chr4 151652578 151652892 -32635770 - AluSx SINE Alu -2 310 1 427 235 38 23 chr4 151653917 151654049 -32634613 - HAL1 LINE L1 -694 1813 1680 1972 136 13 13 chr4 151654261 151654563 -32634099 + AluSx SINE Alu 3 304 -8 302 250 167 10 chr4 151655093 151655189 -32633473 + L2 LINE L2 3195 3305 -8 2243 109 16 0 chr4 151655222 151655525 -32633137 + AluSq SINE Alu 1 308 -5 2744 13 0 13 chr4 151656106 151656413 -32632249 + AluYa5 SINE Alu 1 303 -8 302 294 11 0 chr4 151657005 151657097 -32631565 - MIR SINE MIR -68 194 102 192 204 20 41 chr4 151657076 151657125 -32631537 - L2 LINE L2 -3179 135 88 * 2884 217 88 43 chr4 151657143 151657954 -32630708 - L1ME1 LINE L1 -18 6148 5302 4581 213 65 24 chr4 151658094 151658418 -32630244 - L1M4 LINE L1 -5378 1164 855 261 0 0 0 chr4 151658418 151658447 -32630215 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4581 213 65 24 chr4 151658447 151659239 -32629423 - L1M4 LINE L1 -5687 855 2 751 214 0 8 chr4 151659290 151659421 -32629241 + FLAM_A SINE Alu 1 130 -3 21 36 0 0 chr4 151659900 151659928 -32628734 + AT_rich Low_complexity Low_complexity 1 28 0 2052 56 28 0 chr4 151660377 151660629 -32628033 - L1PA5 LINE L1 0 6154 5896 268 283 172 10 chr4 151660629 151660728 -32627934 + MIR3 SINE MIR 41 155 -53 646 197 13 2 chr4 151660738 151660891 -32627771 + MER58A DNA MER1_type 37 223 -1 253 318 71 0 chr4 151661201 151661286 -32627376 - MLT1I LTR MaLR -204 205 115 812 107 107 0 chr4 151661600 151661712 -32626950 - AluSg SINE Alu -185 125 2 551 222 144 42 chr4 151662015 151662182 -32626480 - MER5A DNA MER1_type 0 189 6 597 174 37 9 chr4 151662567 151662676 -32625986 - MER81 DNA DNA -2 112 1 352 200 45 45 chr4 151662764 151662825 -32625837 - L1ME3A LINE L1 -284 5886 5823 2175 115 0 3 chr4 151662825 151663120 -32625542 - AluSx SINE Alu -16 296 3 352 200 45 45 chr4 151663120 151663168 -32625494 - L1ME3A LINE L1 -346 5824 5777 547 257 20 75 chr4 151663183 151663475 -32625187 - L1ME1 LINE L1 -848 5298 5023 184 333 18 0 chr4 151663598 151663655 -32625007 + L2 LINE L2 3248 3305 -8 453 287 25 8 chr4 151663818 151663940 -32624722 - MIR SINE MIR -92 170 47 363 235 46 65 chr4 151664093 151664246 -32624416 - MIR SINE MIR -50 212 63 1623 138 8 8 chr4 151664530 151664783 -32623879 + AluSq SINE Alu 1 253 -60 1038 189 85 66 chr4 151664885 151664923 -32623739 + MLT1F LTR MaLR 140 176 -366 1580 201 7 4 chr4 151664923 151665202 -32623460 + AluJb SINE Alu 1 280 -32 291 28 0 0 chr4 151665205 151665241 -32623421 + (CAA)n Simple_repeat Simple_repeat 2 37 0 1038 189 85 66 chr4 151665241 151665571 -32623091 + MLT1F LTR MaLR 177 542 0 250 286 71 0 chr4 151665710 151665794 -32622868 + MIR3 SINE MIR 112 201 -7 315 0 0 0 chr4 151666316 151666351 -32622311 + (GA)n Simple_repeat Simple_repeat 2 36 0 359 290 205 24 chr4 151667997 151668789 -32619873 - L2 LINE L2 -127 3186 2196 719 221 0 7 chr4 151668792 151668941 -32619721 + L1PB4 LINE L1 6006 6153 -3 417 215 0 13 chr4 151669878 151669957 -32618705 - FRAM SINE Alu -29 147 70 199 143 29 0 chr4 151670879 151670914 -32617748 - L2 LINE L2 -96 3217 3182 1649 178 28 3 chr4 151671106 151671393 -32617269 - AluJo SINE Alu -18 294 1 220 109 22 22 chr4 151671414 151671460 -32617202 + (ATG)n Simple_repeat Simple_repeat 3 48 0 2246 115 0 7 chr4 151671642 151671975 -32616687 + AluSx SINE Alu 3 312 0 569 198 45 9 chr4 151671996 151672107 -32616555 + AluSq/x SINE Alu 6 120 -193 9644 26 10 214 chr4 151672246 151674009 -32614653 + SVA Other Other 7 1416 0 272 268 69 0 chr4 151674182 151674270 -32614392 - MIR SINE MIR -68 140 60 4343 249 176 13 chr4 151674372 151674508 -32614154 - L2 LINE L2 0 3313 3201 2465 78 0 3 chr4 151674508 151674838 -32613824 - AluY SINE Alu 0 311 1 4343 249 176 13 chr4 151674838 151676761 -32611901 - L2 LINE L2 -112 3201 912 2385 80 10 3 chr4 151677728 151678030 -32610632 - AluSg SINE Alu -6 304 1 208 250 31 31 chr4 151678144 151678208 -32610454 - L2 LINE L2 -7 3265 3202 1738 202 78 2 chr4 151678378 151678774 -32609888 + L1MB7 LINE L1 4853 5278 -868 2163 77 0 115 chr4 151678801 151679150 -32609512 + AluSq SINE Alu 1 309 -4 1468 159 155 0 chr4 151679150 151679440 -32609222 + L1MB7 LINE L1 5850 6184 0 206 163 61 0 chr4 151679894 151679943 -32608719 + L2 LINE L2 3262 3313 0 1269 181 12 20 chr4 151680265 151680514 -32608148 + AluJo SINE Alu 63 309 -3 299 271 31 0 chr4 151680632 151680728 -32607934 + MLT1H LTR MaLR 1 99 -450 938 155 0 0 chr4 151680733 151680875 -32607787 + FRAM SINE Alu 26 167 -9 1138 245 68 93 chr4 151680890 151681015 -32607647 + MLT1H LTR MaLR 116 243 -306 2002 97 121 104 chr4 151681015 151681436 -32607226 - MSTA LTR MaLR 0 428 1 1138 245 68 93 chr4 151681436 151681739 -32606923 + MLT1H LTR MaLR 243 533 -16 333 331 43 14 chr4 151681739 151681996 -32606666 - LTR16A LTR ERVL 0 464 169 424 340 28 9 chr4 151682708 151682923 -32605739 - ERVL LTR ERVL -903 4861 4643 406 268 0 0 chr4 151683081 151683163 -32605499 - FRAM/FAM SINE Alu -92 83 2 1330 234 36 0 chr4 151683163 151683471 -32605191 - HAL1 LINE L1 -878 1629 1311 866 195 13 143 chr4 151683455 151683762 -32604900 - HAL1 LINE L1 -1610 897 631 * 246 296 72 86 chr4 151683852 151684004 -32604658 - HAL1 LINE L1 -2049 458 309 372 222 68 0 chr4 151684032 151684205 -32604457 - HAL1 LINE L1 -2285 222 4 182 323 62 0 chr4 151684235 151684300 -32604362 - L2 LINE L2 0 3272 3204 300 246 0 0 chr4 151684777 151684846 -32603816 - MIR SINE MIR -10 252 184 2390 164 44 2 chr4 151686103 151686512 -32602150 + Tigger1 DNA MER2_type 1 426 -1992 1054 172 0 72 chr4 151686515 151686574 -32602088 + AluJb SINE Alu 89 151 -155 2258 118 0 0 chr4 151686574 151686871 -32601791 + AluSq SINE Alu 1 297 -16 1054 172 0 72 chr4 151686871 151687044 -32601618 + AluJb SINE Alu 151 306 0 3628 95 48 89 chr4 151687061 151687215 -32601447 + Tigger1 DNA MER2_type 418 577 -1841 1544 158 13 68 chr4 151687215 151687525 -32601137 + AluJb SINE Alu 1 293 -19 3628 95 48 89 chr4 151687525 151687947 -32600715 + Tigger1 DNA MER2_type 577 966 -1452 2286 99 0 0 chr4 151687947 151688249 -32600413 - AluSc SINE Alu -7 302 1 3628 95 48 89 chr4 151688249 151688337 -32600325 + Tigger1 DNA MER2_type 966 1056 -1362 481 214 0 0 chr4 151688438 151688527 -32600135 - AluS SINE Alu -215 97 9 1319 231 34 30 chr4 151688535 151689028 -32599634 - L1M4 LINE L1 -2562 3584 3087 1650 178 51 3 chr4 151689028 151689320 -32599342 - AluJo SINE Alu -6 306 1 1319 231 34 30 chr4 151689320 151689333 -32599329 - L1M4 LINE L1 -3059 3087 3076 1325 159 5 5 chr4 151689369 151689576 -32599086 - AluJo SINE Alu -33 279 73 1510 203 131 0 chr4 151689576 151689950 -32598712 - L1M4 LINE L1 -3060 3086 2664 2843 229 72 62 chr4 151689978 151691362 -32597300 + L1ME LINE L1 25 1406 -4674 1428 164 0 45 chr4 151691455 151691724 -32596938 + AluJo SINE Alu 47 303 -9 322 206 128 29 chr4 151691763 151691865 -32596797 - MIR SINE MIR -67 141 30 1988 285 94 72 chr4 151693479 151693534 -32595128 - HAL1 LINE L1 -10 2497 2445 270 0 0 0 chr4 151693534 151693564 -32595098 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1988 285 94 72 chr4 151693564 151694448 -32594214 - HAL1 LINE L1 -62 2445 1538 1101 131 5 47 chr4 151694448 151694639 -32594023 - FRAM SINE Alu 0 176 1 1100 221 148 25 chr4 151694692 151695017 -32593645 - MLT1F1 LTR MaLR 0 567 203 403 272 113 42 chr4 151695406 151695645 -32593017 + L2 LINE L2 3033 3288 -25 1270 287 69 10 chr4 151696272 151696680 -32591982 - LTR16A LTR ERVL -3 447 16 2524 58 0 0 chr4 151696853 151697170 -32591492 + AluSx SINE Alu 1 317 0 1676 174 14 3 chr4 151697175 151697457 -32591205 + AluJo SINE Alu 1 285 -27 579 262 55 39 chr4 151697812 151698068 -32590594 + MIR SINE MIR 3 262 0 2386 99 0 16 chr4 151698364 151698678 -32589984 - AluSg SINE Alu -1 309 1 1944 128 3 56 chr4 151698682 151699002 -32589660 - AluSx SINE Alu -9 303 1 236 277 208 0 chr4 151699287 151699417 -32589245 + MIR3 SINE MIR 49 205 -3 352 163 81 0 chr4 151700112 151700198 -32588464 - L1MC2 LINE L1 -5 6339 6247 2487 157 55 2 chr4 151700200 151700651 -32588011 - L1MC3 LINE L1 -102 7683 7209 265 231 0 15 chr4 151700651 151700716 -32587946 + MER31A LTR ERV1 343 406 -79 581 190 38 82 chr4 151700734 151700892 -32587770 - L1MC3 LINE L1 -572 7213 7063 658 219 0 0 chr4 151700896 151701019 -32587643 - FLAM_A SINE Alu -6 127 5 644 281 30 10 chr4 151701369 151701572 -32587090 - MIR SINE MIR 0 262 56 589 259 119 89 chr4 151701572 151702066 -32586596 + MLT1J LTR MaLR 1 509 -2 1306 147 0 5 chr4 151703061 151703258 -32585404 + AluJo SINE Alu 86 281 -31 282 29 0 0 chr4 151703261 151703296 -32585366 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 224 217 17 17 chr4 151703491 151703551 -32585111 - MER5A DNA MER1_type -1 188 129 1157 128 6 0 chr4 151703589 151703753 -32584909 - AluSg/x SINE Alu -13 299 135 218 54 0 27 chr4 151703753 151703790 -32584872 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1966 111 10 24 chr4 151703790 151704079 -32584583 - AluSx SINE Alu -27 285 1 317 169 15 0 chr4 151704079 151704144 -32584518 - MER5A DNA MER1_type -115 74 9 296 320 0 16 chr4 151704182 151704310 -32584352 - MER5B DNA MER1_type -6 172 47 1261 152 0 56 chr4 151704476 151704493 -32584169 - AluJo SINE Alu -10 302 286 2973 119 22 34 chr4 151704493 151704843 -32583819 - L1MA9 LINE L1 -1 6311 5967 1711 166 27 30 chr4 151704843 151705139 -32583523 - AluJb SINE Alu -17 295 1 2973 119 22 34 chr4 151705139 151705292 -32583370 - L1MA9 LINE L1 -345 5967 5814 1261 152 0 56 chr4 151705292 151705505 -32583157 - AluJo SINE Alu -26 286 85 263 79 0 0 chr4 151705505 151705543 -32583119 - L1MA9 LINE L1 -506 5828 5791 278 123 53 18 chr4 151705543 151705600 -32583062 + LTR66 LTR ERVL 394 452 -158 496 26 0 0 chr4 151705600 151705664 -32582998 + L1M3 LINE L1 5675 5738 -561 6208 184 12 31 chr4 151705764 151706554 -32582108 - L1 LINE L1 -2609 3537 2784 2443 60 0 0 chr4 151706554 151706837 -32581825 - AluY SINE Alu -19 292 10 6208 184 12 31 chr4 151706837 151707448 -32581214 - L1 LINE L1 -3362 2784 2163 537 219 146 30 chr4 151707638 151707728 -32580934 - MER5A DNA MER1_type -3 186 108 1536 160 49 33 chr4 151707728 151708035 -32580627 - AluJb SINE Alu 0 312 1 537 219 146 30 chr4 151708035 151708108 -32580554 - MER5A DNA MER1_type -81 108 4 1884 151 7 26 chr4 151708127 151708432 -32580230 + AluSx SINE Alu 1 299 -13 511 282 40 1 chr4 151708439 151708597 -32580065 + MER20B DNA MER1_type 37 202 -17 4541 220 98 39 chr4 151708775 151708953 -32579709 + L1MC4 LINE L1 6461 6627 -1415 213 39 0 0 chr4 151708953 151708979 -32579683 + (TG)n Simple_repeat Simple_repeat 2 27 0 4541 220 98 39 chr4 151708979 151710177 -32578485 + L1MC4 LINE L1 6627 7918 -124 255 125 0 0 chr4 151710177 151710217 -32578445 + (CATA)n Simple_repeat Simple_repeat 1 40 0 2347 177 19 14 chr4 151710550 151710974 -32577688 + MSTB LTR MaLR 1 426 0 544 348 18 18 chr4 151711079 151711303 -32577359 + MLT1K LTR MaLR 143 366 -222 2178 118 0 13 chr4 151711335 151711639 -32577023 + AluSx SINE Alu 1 300 -12 2728 130 132 0 chr4 151712369 151712801 -32575861 - MER1A DNA MER1_type -40 489 1 679 146 9 0 chr4 151712817 151712927 -32575735 + MLT1D LTR MaLR 395 505 0 450 261 60 0 chr4 151713044 151713178 -32575484 - MIR SINE MIR -36 226 85 2196 110 0 0 chr4 151713527 151713818 -32574844 - AluSx SINE Alu -21 291 1 21 0 0 0 chr4 151714694 151714715 -32573947 + AT_rich Low_complexity Low_complexity 1 21 0 2076 92 71 7 chr4 151714841 151715122 -32573540 + AluSg SINE Alu 1 299 -11 420 195 0 0 chr4 151715778 151715860 -32572802 - AluS SINE Alu -3 306 225 2318 100 0 3 chr4 151716055 151716346 -32572316 - AluSg SINE Alu -20 290 1 574 209 6 76 chr4 151716864 151716973 -32571689 + MIR SINE MIR 100 194 -68 2079 183 93 9 chr4 151716973 151717404 -32571258 - MLT1C LTR MaLR 0 467 1 574 209 6 76 chr4 151717404 151717466 -32571196 + MIR SINE MIR 194 259 -3 238 354 85 12 chr4 151717462 151717544 -32571118 - L2 LINE L2 -18 3295 3208 * 448 221 16 90 chr4 151717577 151717699 -32570963 + MER81 DNA DNA 2 114 0 1000 271 85 10 chr4 151717752 151718195 -32570467 + MLT1J LTR MaLR 1 511 0 2113 95 3 33 chr4 151718302 151718606 -32570056 + AluSc SINE Alu 1 295 -14 225 208 38 0 chr4 151718667 151718720 -32569942 + L1MEd LINE L1 126 180 -5939 486 230 0 0 chr4 151718747 151718847 -32569815 - MIR SINE MIR -43 219 120 484 243 6 35 chr4 151718849 151719022 -32569640 + L1MEd LINE L1 1082 1249 -4870 946 285 20 8 chr4 151719053 151719299 -32569363 - MIR SINE MIR -1 261 13 1094 167 9 29 chr4 151719388 151719598 -32569064 + MER3 DNA MER1_type 4 209 0 2113 122 3 10 chr4 151719763 151720067 -32568595 - AluSx SINE Alu -10 302 1 487 272 70 0 chr4 151720159 151720317 -32568345 - L2 LINE L2 -1194 2120 1952 1589 219 114 18 chr4 151720504 151720951 -32567711 - MLT1E2 LTR MaLR 0 626 137 384 263 0 0 chr4 151721214 151721294 -32567368 - L2 LINE L2 -19 3294 3215 1079 182 0 0 chr4 151721516 151721692 -32566970 - FRAM SINE Alu 0 176 1 2434 85 0 0 chr4 151722144 151722449 -32566213 + AluSc SINE Alu 1 305 -4 969 36 0 0 chr4 151722588 151722700 -32565962 + AluY SINE Alu 183 294 -17 1511 138 67 79 chr4 151722700 151723056 -32565606 + MLT1B LTR MaLR 33 384 -6 2535 68 0 0 chr4 151724174 151724483 -32564179 - AluY SINE Alu -2 309 1 563 236 76 49 chr4 151724656 151724881 -32563781 + L1MC5 LINE L1 6988 7218 -743 337 258 110 42 chr4 151724971 151725243 -32563419 + L1MC4 LINE L1 7242 7634 -408 240 256 33 56 chr4 151725468 151725558 -32563104 + MIR3 SINE MIR 85 172 -36 1201 152 0 5 chr4 151726143 151726334 -32562328 - MER20 DNA MER1_type 0 219 30 1733 193 0 10 chr4 151726566 151726862 -32561800 + AluJo SINE Alu 1 293 -19 1050 155 126 0 chr4 151727015 151727221 -32561441 + Tigger3b DNA MER2_type 1 232 -999 2208 133 79 0 chr4 151727227 151727618 -32561044 - MSTA LTR MaLR -6 422 1 5909 118 15 24 chr4 151727618 151728188 -32560474 + Tigger3b DNA MER2_type 228 787 -2241 7794 18 1 1 chr4 151728188 151729351 -32559311 + L1PA3 LINE L1 4993 6155 0 5909 118 15 24 chr4 151729351 151729784 -32558878 + Tigger3b DNA MER2_type 787 1222 -9 1846 140 0 54 chr4 151730441 151730755 -32557907 - AluJb SINE Alu -15 297 1 487 302 68 54 chr4 151730769 151730991 -32557671 + MIR SINE MIR 32 256 -6 2094 131 0 31 chr4 151731907 151732227 -32556435 + AluSx SINE Alu 1 310 -2 219 203 0 94 chr4 151732286 151732350 -32556312 + L3 LINE CR1 1519 1576 -1 21 0 0 0 chr4 151732706 151732727 -32555935 + AT_rich Low_complexity Low_complexity 1 21 0 2921 209 62 8 chr4 151733302 151734222 -32554440 + L1MB7 LINE L1 4316 5394 -771 3021 137 57 64 chr4 151734224 151734408 -32554254 + L1MB7 LINE L1 5508 5692 -492 769 188 0 0 chr4 151734408 151734541 -32554121 + FLAM_A SINE Alu 1 133 0 3021 137 57 64 chr4 151734541 151734577 -32554085 + L1MB7 LINE L1 5692 5727 -457 1270 220 54 18 chr4 151734577 151734854 -32553808 - AluJo SINE Alu -25 287 1 3021 137 57 64 chr4 151734854 151735305 -32553357 + L1MB7 LINE L1 5727 6175 -9 1784 164 37 3 chr4 151736636 151736935 -32551727 + AluJo SINE Alu 1 309 -3 2141 99 0 0 chr4 151737457 151737750 -32550912 + AluSx SINE Alu 11 303 0 2535 40 0 10 chr4 151737798 151738096 -32550566 + AluY SINE Alu 1 295 -16 467 295 85 84 chr4 151738160 151738631 -32550031 + L2 LINE L2 2604 3081 -191 222 318 206 0 chr4 151738824 151738931 -32549731 + L2 LINE L2 3136 3264 -8 1022 276 91 35 chr4 151739256 151739907 -32548755 - L2 LINE L2 -7 3306 2624 2351 94 3 3 chr4 151740365 151740673 -32547989 + AluSc SINE Alu 1 308 -1 240 170 0 0 chr4 151740735 151740782 -32547880 + L1MB8 LINE L1 6126 6172 -6 612 226 98 113 chr4 151742094 151742329 -32546333 - L2 LINE L2 -744 2570 2340 2332 172 17 72 chr4 151742329 151742791 -32545871 + MLT1D LTR MaLR 3 434 -71 2260 88 31 0 chr4 151742791 151743085 -32545577 - AluSc SINE Alu -6 303 1 2332 172 17 72 chr4 151743085 151743150 -32545512 + MLT1D LTR MaLR 434 501 -4 612 226 98 113 chr4 151743150 151743251 -32545411 - L2 LINE L2 -974 2340 2239 2580 46 3 0 chr4 151743908 151744211 -32544451 + AluSp SINE Alu 1 304 -9 1548 110 22 4 chr4 151744529 151744756 -32543906 + AluSp SINE Alu 1 231 -82 467 239 123 0 chr4 151744870 151745025 -32543637 + AluSq SINE Alu 140 313 0 6934 130 69 1 chr4 151745025 151746197 -32542465 + Tigger1 DNA MER2_type 1167 2418 0 1915 134 14 0 chr4 151746537 151746828 -32541834 + AluSx SINE Alu 1 295 -17 302 360 109 24 chr4 151747128 151747183 -32541479 + L2 LINE L2 3044 3093 -179 5064 53 88 118 chr4 151747183 151748034 -32540628 - LTR12 LTR ERV1 0 826 1 302 360 109 24 chr4 151748034 151748189 -32540473 + L2 LINE L2 3093 3272 0 239 133 22 0 chr4 151748189 151748234 -32540428 + (TGAA)n Simple_repeat Simple_repeat 2 47 0 3014 74 7 0 chr4 151748823 151749227 -32539435 - L1PA8 LINE L1 -9 6163 5757 1540 161 11 35 chr4 151749228 151749514 -32539148 + AluJo SINE Alu 27 305 -7 184 216 27 0 chr4 151749978 151750015 -32538647 + MIR SINE MIR 217 254 -8 809 200 0 0 chr4 151751100 151751240 -32537422 - FLAM_C SINE Alu -3 140 1 1962 125 0 56 chr4 151751254 151751559 -32537103 - AluSx SINE Alu -24 288 1 1775 168 28 0 chr4 151751725 151752011 -32536651 + AluJb SINE Alu 1 294 -18 307 244 0 13 chr4 151752226 151752304 -32536358 + MER20 DNA MER1_type 6 82 -137 333 0 0 0 chr4 151752379 151752416 -32536246 + (TC)n Simple_repeat Simple_repeat 2 38 0 207 0 0 0 chr4 151752415 151752438 -32536224 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 36 53 0 0 chr4 151753443 151753500 -32535162 + AT_rich Low_complexity Low_complexity 1 57 0 285 75 0 0 chr4 151753939 151753979 -32534683 + (CA)n Simple_repeat Simple_repeat 1 40 0 297 312 52 0 chr4 151754027 151754104 -32534558 - L2 LINE L2 -36 3236 3156 21 57 0 0 chr4 151754763 151754798 -32533864 + AT_rich Low_complexity Low_complexity 1 35 0 194 248 257 9 chr4 151755110 151755219 -32533443 - MIR SINE MIR 0 262 127 279 228 21 124 chr4 151755453 151755598 -32533064 - MLT1K LTR MaLR -5 583 454 369 62 0 0 chr4 151755645 151755693 -32532969 + (TG)n Simple_repeat Simple_repeat 2 49 0 379 296 0 9 chr4 151755725 151755833 -32532829 - MLT1K LTR MaLR -465 123 17 245 250 0 125 chr4 151755966 151756054 -32532608 - MER5B DNA MER1_type -5 173 97 490 75 0 9 chr4 151756532 151756745 -32531917 + AluY SINE Alu 1 293 -16 245 261 45 19 chr4 151757448 151757605 -32531057 + L1ME LINE L1 5724 5884 -237 198 0 0 0 chr4 151757649 151757671 -32530991 + (CTTG)n Simple_repeat Simple_repeat 1 22 0 878 181 152 29 chr4 151757671 151757881 -32530781 - AluJo SINE Alu -31 281 46 369 259 104 33 chr4 151757891 151758103 -32530559 - L1ME4a LINE L1 -189 5932 5706 572 215 0 21 chr4 151758231 151758375 -32530287 - L1ME4a LINE L1 -1377 4769 4629 544 170 9 45 chr4 151758375 151758487 -32530175 + AluJo SINE Alu 112 219 -93 1208 100 0 0 chr4 151758590 151758740 -32529922 + AluSq/x SINE Alu 1 150 -163 584 154 166 6 chr4 151758755 151758924 -32529738 - L1ME4a LINE L1 -2099 4047 3852 2581 56 0 3 chr4 151758924 151759228 -32529434 + AluY SINE Alu 1 303 -8 255 61 0 0 chr4 151759268 151759301 -32529361 + (CA)n Simple_repeat Simple_repeat 2 34 0 559 176 20 0 chr4 151759319 151759421 -32529241 - L1PB3 LINE L1 -7 6147 6044 400 183 67 0 chr4 151759421 151759525 -32529137 - L1M4 LINE L1 -2058 4088 3978 972 141 47 0 chr4 151759547 151759717 -32528945 - L1PB3 LINE L1 -119 6035 5858 2075 107 0 68 chr4 151759717 151760025 -32528637 + AluSx SINE Alu 1 287 -25 25 0 0 0 chr4 151760025 151760050 -32528612 + AT_rich Low_complexity Low_complexity 1 25 0 1143 236 85 3 chr4 151760063 151760428 -32528234 - L1M4 LINE L1 -2292 3854 3460 495 283 5 27 chr4 151760420 151760607 -32528055 - L1MEc LINE L1 -6191 205 23 * 217 148 37 19 chr4 151761528 151761573 -32527089 + (CCAA)n Simple_repeat Simple_repeat 1 49 -6 2110 133 0 13 chr4 151761573 151761875 -32526787 - AluSx SINE Alu -14 298 1 217 148 37 19 chr4 151761875 151761883 -32526779 + (CCAA)n Simple_repeat Simple_repeat 49 55 0 1692 180 8 30 chr4 151762535 151762897 -32525765 + L1MB3 LINE L1 5829 6182 -1 21 0 0 0 chr4 151762925 151762946 -32525716 + AT_rich Low_complexity Low_complexity 1 21 0 327 244 199 26 chr4 151762946 151763102 -32525560 - L1ME4a LINE L1 -5 6116 5934 1962 173 0 0 chr4 151763180 151763480 -32525182 - AluSx SINE Alu -12 300 1 318 188 0 35 chr4 151763869 151763954 -32524708 - L1MC5 LINE L1 -47 7914 7833 405 0 0 0 chr4 151764238 151764283 -32524379 + (TG)n Simple_repeat Simple_repeat 2 46 0 1754 161 0 31 chr4 151764284 151764576 -32524086 - AluJo SINE Alu -29 283 1 236 186 17 0 chr4 151764740 151764799 -32523863 + (TA)n Simple_repeat Simple_repeat 2 61 0 350 316 118 36 chr4 151764909 151765241 -32523421 - L1ME4a LINE L1 -307 5814 5456 207 0 0 0 chr4 151766379 151766402 -32522260 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 240 289 40 13 chr4 151766459 151766535 -32522127 - MIR SINE MIR -172 90 13 797 199 0 0 chr4 151766948 151767079 -32521583 + FLAM_A SINE Alu 1 131 -2 656 231 2 13 chr4 151767526 151767701 -32520961 + L1MB8 LINE L1 5977 6157 -15 245 276 31 56 chr4 151767858 151768054 -32520608 + L1M4 LINE L1 3545 3735 -2411 22 35 0 0 chr4 151768060 151768089 -32520573 + AT_rich Low_complexity Low_complexity 1 29 0 429 263 10 0 chr4 151768155 151768254 -32520408 + MIR SINE MIR 2 101 -161 275 245 112 41 chr4 151768443 151768541 -32520121 + MIR SINE MIR 124 228 -34 21 0 0 0 chr4 151768568 151768589 -32520073 + AT_rich Low_complexity Low_complexity 1 21 0 435 296 123 9 chr4 151768602 151768822 -32519840 - L1ME LINE L1 -395 5726 5482 2108 101 10 7 chr4 151769310 151769607 -32519055 + AluSx SINE Alu 1 298 -14 2148 103 0 4 chr4 151770037 151770346 -32518316 - AluY SINE Alu 0 312 5 261 0 0 0 chr4 151770983 151771012 -32517650 + (TTG)n Simple_repeat Simple_repeat 2 30 0 429 271 139 7 chr4 151772699 151772850 -32515812 + MIR SINE MIR 33 203 -59 1816 144 29 0 chr4 151773012 151773290 -32515372 - AluJb SINE Alu -15 297 12 422 78 16 0 chr4 151773455 151773519 -32515143 - L1MB7 LINE L1 -9 6175 6111 735 138 37 0 chr4 151773519 151773628 -32515034 + AluJb SINE Alu 3 115 -197 263 27 0 27 chr4 151773628 151773665 -32514997 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 2796 153 42 86 chr4 151773666 151773921 -32514741 - L1MB8 LINE L1 -70 6108 5843 1693 140 4 30 chr4 151773921 151774186 -32514476 - AluJo SINE Alu -31 281 24 2796 153 42 86 chr4 151774186 151774637 -32514025 - L1MB8 LINE L1 -335 5843 5433 21 36 0 0 chr4 151774653 151774681 -32513981 + AT_rich Low_complexity Low_complexity 1 28 0 1768 158 7 33 chr4 151774786 151775089 -32513573 - AluJo SINE Alu -17 295 1 624 228 8 0 chr4 151775105 151775228 -32513434 - FLAM_C SINE Alu -19 124 1 219 315 188 20 chr4 151775879 151776028 -32512634 - L2 LINE L2 -11 3302 3129 619 298 73 8 chr4 151777483 151777728 -32510934 - MIR SINE MIR -1 261 1 2500 110 81 142 chr4 151777948 151778784 -32509878 - pTR5 LTR ERV1 -143 2295 1 708 194 82 47 chr4 151778863 151779142 -32509520 - pTR5 LTR ERV1 -1410 1028 740 2128 123 0 3 chr4 151779417 151779709 -32508953 - AluSx SINE Alu -21 291 1 225 229 43 14 chr4 151779719 151779789 -32508873 + MER103 DNA DNA 2 73 -93 1585 124 48 0 chr4 151779910 151780159 -32508503 + L1PA15 LINE L1 5892 6152 -13 1901 133 23 29 chr4 151780162 151780471 -32508191 + AluJb SINE Alu 1 307 -5 1070 189 128 61 chr4 151781456 151781815 -32506847 + MLT1D LTR MaLR 1 383 -122 2819 127 121 0 chr4 151781816 151782288 -32506374 - MER1A DNA MER1_type 0 529 1 629 146 9 0 chr4 151782304 151782414 -32506248 + MLT1D LTR MaLR 395 505 0 501 266 58 0 chr4 151782526 151782665 -32505997 - MIR SINE MIR -31 231 85 201 316 26 0 chr4 151782725 151782801 -32505861 - MIR SINE MIR -6 256 179 2168 110 0 0 chr4 151783014 151783305 -32505357 - AluSx SINE Alu -21 291 1 21 0 0 0 chr4 151784181 151784202 -32504460 + AT_rich Low_complexity Low_complexity 1 21 0 2081 89 71 7 chr4 151784328 151784609 -32504053 + AluSg SINE Alu 1 299 -11 2086 146 0 7 chr4 151785268 151785576 -32503086 - AluSx SINE Alu -6 306 1 204 40 0 0 chr4 151785685 151785710 -32502952 + (TG)n Simple_repeat Simple_repeat 1 25 0 2015 138 0 52 chr4 151786035 151786362 -32502300 + AluJo SINE Alu 1 310 -2 689 207 60 7 chr4 151788415 151788565 -32500097 - MER20 DNA MER1_type 0 219 62 407 232 5 82 chr4 151789489 151789696 -32498966 - L1ME4a LINE L1 -3 6118 5928 314 264 28 19 chr4 151790204 151790310 -32498352 - L1ME1 LINE L1 -2 6164 6058 791 157 0 0 chr4 151790361 151790476 -32498186 + FLAM_A SINE Alu 1 115 -18 659 323 110 38 chr4 151790514 151790883 -32497779 + L3 LINE CR1 667 1075 -502 2422 71 0 0 chr4 151790883 151791179 -32497483 - AluY SINE Alu -15 296 1 659 323 110 38 chr4 151791179 151791255 -32497407 + L3 LINE CR1 1075 1144 -433 415 287 30 43 chr4 151791251 151791415 -32497247 - MER5B DNA MER1_type -16 162 1 * 821 223 39 9 chr4 151791626 151791855 -32496807 + L1MC4 LINE L1 6788 7023 -1019 457 229 14 135 chr4 151791858 151792155 -32496507 + L1MC4a LINE L1 7058 7318 -490 2129 120 27 7 chr4 151792240 151792539 -32496123 + AluSx SINE Alu 1 305 -7 25 0 0 0 chr4 151792662 151792687 -32495975 + AT_rich Low_complexity Low_complexity 1 25 0 425 292 76 21 chr4 151792715 151792951 -32495711 + L1MC4 LINE L1 7793 8041 -1 512 317 118 5 chr4 151792999 151793220 -32495442 + L3 LINE CR1 1311 1556 -21 275 253 149 35 chr4 151793472 151793559 -32495103 + L2 LINE L2 3176 3272 0 464 278 7 0 chr4 151794359 151794503 -32494159 + MER103 DNA DNA 12 156 -10 233 224 17 0 chr4 151795165 151795223 -32493439 + L1ME3A LINE L1 4881 4939 -1207 349 316 131 10 chr4 151795329 151795535 -32493127 + L1ME3A LINE L1 5079 5309 -837 226 310 35 21 chr4 151795551 151795696 -32492966 + L1ME3A LINE L1 5349 5495 -667 2080 148 60 5 chr4 151795728 151796113 -32492549 - MER31A LTR ERV1 -41 444 39 313 267 20 0 chr4 151796166 151796267 -32492395 + L1ME3A LINE L1 5844 5946 -224 484 233 85 0 chr4 151796268 151796397 -32492265 + MER58A DNA MER1_type 26 165 0 994 173 48 12 chr4 151796625 151796793 -32491869 + FRAM SINE Alu 1 169 -7 185 192 0 19 chr4 151797228 151797280 -32491382 + (TATG)n Simple_repeat Simple_repeat 2 52 0 361 254 130 23 chr4 151797284 151797504 -32491158 - L1MC4a LINE L1 -302 5819 5668 441 0 0 0 chr4 151798280 151798329 -32490333 + (CA)n Simple_repeat Simple_repeat 2 50 0 2322 68 7 17 chr4 151799078 151799374 -32489288 + AluSg SINE Alu 1 293 -17 684 129 0 0 chr4 151799985 151800086 -32488576 + AluJ/FLAM SINE Alu 1 101 -211 6356 43 2 158 chr4 151800101 151801344 -32487318 + SVA Other Other 432 1386 0 927 159 34 40 chr4 151801344 151801520 -32487142 + AluJo SINE Alu 123 297 -15 200 57 0 29 chr4 151801520 151801555 -32487107 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 1847 157 4 4 chr4 151801565 151801846 -32486816 - AluJb SINE Alu -31 281 1 11177 107 25 24 chr4 151801847 151802779 -32485883 - Tigger1 DNA MER2_type -332 2086 1149 1676 169 33 0 chr4 151802779 151803052 -32485610 + AluJo SINE Alu 16 297 -15 11177 107 25 24 chr4 151803052 151803922 -32484740 - Tigger1 DNA MER2_type -1269 1149 282 1465 97 5 0 chr4 151803922 151804108 -32484554 - AluSp SINE Alu -14 299 113 252 129 14 114 chr4 151804146 151804216 -32484446 - AluSp SINE Alu -171 132 70 459 202 76 25 chr4 151804216 151804335 -32484327 + AluJo/FRAM SINE Alu 180 304 -8 2336 77 10 3 chr4 151804508 151804807 -32483855 + AluY SINE Alu 1 301 -10 650 256 27 8 chr4 151804877 151805114 -32483548 - L1P4 LINE L1 -355 5806 5557 2238 117 0 3 chr4 151805629 151805927 -32482735 + AluSx SINE Alu 1 297 -15 684 263 11 6 chr4 151805980 151806155 -32482507 + MIR SINE MIR 5 180 -82 1184 198 14 126 chr4 151806169 151806232 -32482430 - MLT2C1 LTR ERVL -2 395 327 2494 64 0 0 chr4 151806232 151806527 -32482135 + AluY SINE Alu 1 295 -16 1184 198 14 126 chr4 151806527 151806539 -32482123 - MLT2C1 LTR ERVL -70 327 315 1984 148 7 3 chr4 151806539 151806842 -32481820 + AluSq SINE Alu 1 304 -9 1184 198 14 126 chr4 151806842 151807210 -32481452 - MLT2C1 LTR ERVL -82 315 1 689 257 62 43 chr4 151809241 151809451 -32479211 + MIR SINE MIR 1 214 -48 383 275 123 47 chr4 151809601 151809772 -32478890 - MIR3 SINE MIR -15 193 10 2315 110 0 3 chr4 151810087 151810388 -32478274 + AluSx SINE Alu 1 300 -12 207 217 150 33 chr4 151810653 151810713 -32477949 - L2 LINE L2 0 3313 3247 500 158 126 0 chr4 151811139 151811266 -32477396 + L1MC3 LINE L1 7643 7785 0 226 233 0 0 chr4 151812506 151812549 -32476113 + (TCTG)n Simple_repeat Simple_repeat 3 45 0 2240 105 0 0 chr4 151812859 151813155 -32475507 - AluY SINE Alu -15 296 1 2250 117 0 3 chr4 151813173 151813480 -32475182 - AluSq SINE Alu -7 306 1 2230 180 158 43 chr4 151814281 151814887 -32473775 + MER63C DNA MER1_type 255 930 0 318 106 0 0 chr4 151814945 151814992 -32473670 + (TATG)n Simple_repeat Simple_repeat 4 50 0 1878 168 25 30 chr4 151814993 151815356 -32473306 - MLT1A1 LTR MaLR -4 361 1 22 0 0 0 chr4 151815356 151815378 -32473284 + AT_rich Low_complexity Low_complexity 1 22 0 380 113 71 6 chr4 151816723 151816891 -32471771 + (TA)n Simple_repeat Simple_repeat 2 180 0 2187 105 0 7 chr4 151816891 151817186 -32471476 - AluSc SINE Alu -16 293 1 24 32 0 0 chr4 151817243 151817274 -32471388 + AT_rich Low_complexity Low_complexity 1 31 0 440 149 35 0 chr4 151817853 151817938 -32470724 - L1M3 LINE L1 -434 5717 5638 307 82 41 0 chr4 151817996 151818045 -32470617 - Alu SINE Alu -10 291 241 2775 103 6 6 chr4 151818053 151818566 -32470096 - L1P5 LINE L1 -498 5653 5139 1275 167 0 26 chr4 151818756 151818989 -32469673 - AluJo SINE Alu -5 307 81 192 77 0 0 chr4 151819260 151819286 -32469376 + (T)n Simple_repeat Simple_repeat 1 26 0 222 281 58 83 chr4 151819662 151819783 -32468879 + L2 LINE L2 3146 3263 -9 2457 86 0 6 chr4 151819808 151820121 -32468541 - AluY SINE Alu 0 311 1 1261 123 69 0 chr4 151820121 151820313 -32468349 - AluSg/x SINE Alu -10 300 92 22 0 0 0 chr4 151821093 151821115 -32467547 + AT_rich Low_complexity Low_complexity 1 22 0 186 261 0 72 chr4 151821324 151821393 -32467269 - L2 LINE L2 -70 3202 3139 328 299 78 0 chr4 151821947 151822114 -32466548 - MIR SINE MIR -10 252 73 2296 62 31 3 chr4 151822150 151822440 -32466222 + AluY SINE Alu 2 299 -12 2380 104 0 0 chr4 151822441 151822740 -32465922 + AluY SINE Alu 1 299 -12 1346 130 5 0 chr4 151822806 151822998 -32465664 - THE1B LTR MaLR -171 193 1 12139 80 2 4 chr4 151822998 151824580 -32464082 - THE1B-int LTR MaLR 0 1580 1 2171 131 35 41 chr4 151824580 151824946 -32463716 - THE1B LTR MaLR 0 364 1 859 208 36 59 chr4 151824946 151824973 -32463689 - MLT1C LTR MaLR -41 349 323 2456 83 0 6 chr4 151824973 151825286 -32463376 + AluY SINE Alu 1 311 0 859 208 36 59 chr4 151825286 151825625 -32463037 - MLT1C LTR MaLR -67 323 1 1218 143 67 22 chr4 151825779 151826003 -32462659 + MER46A DNA MER2_type 2 235 -1 1057 170 41 25 chr4 151826174 151826400 -32462262 - MSTD LTR MaLR 0 396 204 409 239 120 0 chr4 151826908 151827000 -32461662 - MLT1F1 LTR MaLR -94 473 371 2143 125 23 0 chr4 151827000 151827303 -32461359 + AluSx SINE Alu 1 310 -2 29 0 0 0 chr4 151827457 151827486 -32461176 + AT_rich Low_complexity Low_complexity 1 29 0 380 275 43 45 chr4 151827535 151827668 -32460994 - MIR SINE MIR -61 147 46 1728 147 3 64 chr4 151827835 151828149 -32460513 - AluSx SINE Alu -17 295 1 1248 91 0 160 chr4 151828327 151828590 -32460072 + AluJb SINE Alu 86 306 -6 2367 88 7 3 chr4 151828632 151828938 -32459724 + AluSp SINE Alu 2 308 -5 189 147 0 0 chr4 151829160 151829194 -32459468 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 236 106 85 21 chr4 151829487 151829534 -32459128 - Alu SINE Alu -3 300 251 950 206 31 45 chr4 151829655 151829878 -32458784 - AluJo SINE Alu -92 220 1 651 229 220 63 chr4 151829900 151830206 -32458456 + L2 LINE L2 1827 2084 -1230 2212 107 0 7 chr4 151830206 151830506 -32458156 + AluSg SINE Alu 1 298 -12 651 229 220 63 chr4 151830506 151830754 -32457908 + L2 LINE L2 2084 2468 -846 1354 176 90 36 chr4 151830888 151831167 -32457495 - AluJo SINE Alu -18 294 1 195 316 53 0 chr4 151831244 151831320 -32457342 + L2 LINE L2 2942 3021 -292 2221 104 10 3 chr4 151831863 151832161 -32456501 - AluSx SINE Alu -12 300 1 2491 76 0 3 chr4 151832471 151832774 -32455888 - AluY SINE Alu -9 302 1 2530 68 0 6 chr4 151832774 151833085 -32455577 - AluY SINE Alu -2 309 1 365 281 0 0 chr4 151833295 151833377 -32455285 - L1M4 LINE L1 -2277 3869 3788 1379 108 10 21 chr4 151833382 151833576 -32455086 - AluSx SINE Alu -120 192 1 589 200 24 32 chr4 151833582 151833707 -32454955 - FLAM_A SINE Alu -9 124 1 2473 86 0 0 chr4 151833776 151834079 -32454583 - AluSx SINE Alu -9 303 1 1316 111 11 0 chr4 151834088 151834269 -32454393 - AluSx SINE Alu -129 183 1 330 188 24 47 chr4 151834270 151834355 -32454307 + MER74A LTR ERVL 14 96 -462 2201 98 0 23 chr4 151834355 151834660 -32454002 - AluSq SINE Alu -15 298 1 1815 151 7 11 chr4 151834660 151834944 -32453718 - AluSx SINE Alu -11 301 18 1165 179 18 9 chr4 151834968 151835132 -32453530 - AluJb SINE Alu -9 303 135 1983 149 0 13 chr4 151835132 151835433 -32453229 - AluSx SINE Alu -13 299 3 1165 179 18 9 chr4 151835433 151835486 -32453176 - AluJb SINE Alu -177 135 84 416 195 80 91 chr4 151835486 151835824 -32452838 + MER74B LTR ERVL 148 538 -20 327 206 0 0 chr4 151835881 151835944 -32452718 + MER5A DNA MER1_type 1 63 -126 2318 84 13 3 chr4 151835961 151836259 -32452403 + AluSq SINE Alu 1 301 -12 4709 80 42 36 chr4 151836375 151836534 -32452128 + LTR8 LTR ERV1 1 158 -533 1839 135 30 14 chr4 151836534 151836831 -32451831 + AluSg SINE Alu 1 302 -8 4709 80 42 36 chr4 151836831 151837358 -32451304 + LTR8 LTR ERV1 158 691 0 2091 105 62 60 chr4 151837402 151837860 -32450802 - MER4A LTR ERV1 0 664 82 2049 128 16 16 chr4 151837860 151838172 -32450490 + AluSx SINE Alu 1 312 0 2091 105 62 60 chr4 151838172 151838252 -32450410 - MER4A LTR ERV1 -582 82 4 1989 119 3 7 chr4 151838547 151838679 -32449983 + AluSx SINE Alu 3 134 -178 2278 99 3 3 chr4 151838679 151838971 -32449691 + AluSc SINE Alu 1 292 -17 1989 119 3 7 chr4 151838971 151839123 -32449539 + AluSx SINE Alu 134 286 -26 296 366 55 21 chr4 151839577 151840050 -32448612 - L2 LINE L2 -1262 2052 1564 260 237 184 35 chr4 151840684 151840798 -32447864 - MIR3 SINE MIR -63 145 15 340 270 70 9 chr4 151841092 151841207 -32447455 + MIR3 SINE MIR 60 181 -27 2279 108 0 0 chr4 151841337 151841642 -32447020 + AluSx SINE Alu 1 305 -7 2074 148 0 0 chr4 151842340 151842643 -32446019 + AluJb SINE Alu 1 303 -9 2469 60 0 31 chr4 151843556 151843873 -32444789 + AluY SINE Alu 1 307 -4 2426 76 7 0 chr4 151843924 151844227 -32444435 + AluY SINE Alu 2 306 -5 1832 152 20 14 chr4 151844451 151844747 -32443915 + AluJb SINE Alu 1 298 -14 180 217 0 0 chr4 151845782 151845828 -32442834 + (TGGA)n Simple_repeat Simple_repeat 4 49 0 501 250 85 23 chr4 151845907 151846083 -32442579 + MIR SINE MIR 1 187 -75 1488 154 112 4 chr4 151846430 151846689 -32441973 + AluJo SINE Alu 3 289 -23 1957 114 0 32 chr4 151846980 151847261 -32441401 + AluSx SINE Alu 1 272 -40 210 71 0 0 chr4 151847361 151847389 -32441273 + (A)n Simple_repeat Simple_repeat 1 28 0 1336 195 18 25 chr4 151847402 151847686 -32440976 + L1MB5 LINE L1 5088 5367 -807 1876 155 7 7 chr4 151847686 151847989 -32440673 + AluJb SINE Alu 1 303 -9 1336 195 18 25 chr4 151847989 151848192 -32440470 + L1MB5 LINE L1 5367 5570 -604 594 138 0 21 chr4 151848199 151848293 -32440369 - AluSq/x SINE Alu -176 136 45 2575 165 111 35 chr4 151848294 151848411 -32440251 + L1MB5 LINE L1 5554 5661 -513 2064 148 0 16 chr4 151848411 151848728 -32439934 + AluJb SINE Alu 1 312 0 2575 165 111 35 chr4 151848728 151848924 -32439738 + L1MB5 LINE L1 5661 5841 -333 2088 138 3 0 chr4 151848924 151849228 -32439434 + AluSx SINE Alu 1 305 -7 2575 165 111 35 chr4 151849228 151849488 -32439174 + L1MB5 LINE L1 5841 6172 -2 2866 50 3 24 chr4 151849536 151849912 -32438750 + L1PA8 LINE L1 5805 6172 0 2451 84 0 10 chr4 151849921 151850231 -32438431 + AluY SINE Alu 1 307 -4 2190 128 0 0 chr4 151850283 151850589 -32438073 + AluSx SINE Alu 1 306 -6 792 161 0 23 chr4 151850872 151851002 -32437660 + FLAM_C SINE Alu 2 128 -5 1459 173 20 62 chr4 151851067 151851201 -32437461 + AluJo SINE Alu 1 139 -173 2541 51 0 0 chr4 151851201 151851494 -32437168 - AluY SINE Alu -18 293 1 1459 173 20 62 chr4 151851494 151851665 -32436997 + AluJo SINE Alu 139 293 -19 1799 142 69 7 chr4 151851702 151851990 -32436672 - AluJb SINE Alu -6 306 1 335 269 198 15 chr4 151852076 151852273 -32436389 - MIR SINE MIR -12 250 18 400 188 25 12 chr4 151852550 151852630 -32436032 - MER112 DNA MER1_type 0 260 180 725 206 67 42 chr4 151852631 151852796 -32435866 - FAM SINE Alu -6 43 1 363 253 97 26 chr4 151852815 151852904 -32435758 - MER112 DNA MER1_type -95 165 84 420 55 0 0 chr4 151852904 151852959 -32435703 + (TG)n Simple_repeat Simple_repeat 2 56 0 363 253 97 26 chr4 151852959 151853023 -32435639 - MER112 DNA MER1_type -176 84 1 2245 103 3 0 chr4 151853097 151853409 -32435253 - AluSp SINE Alu 0 313 1 2138 141 0 0 chr4 151853425 151853723 -32434939 - AluSx SINE Alu -12 300 3 2255 100 3 0 chr4 151854125 151854416 -32434246 - AluSx SINE Alu -20 292 1 25 0 0 0 chr4 151854574 151854599 -32434063 + AT_rich Low_complexity Low_complexity 1 25 0 1618 150 29 21 chr4 151854800 151855080 -32433582 - AluJb SINE Alu -30 282 1 2300 111 3 0 chr4 151855214 151855512 -32433150 - AluSx SINE Alu -13 299 1 2423 106 3 0 chr4 151855661 151855973 -32432689 + AluSp SINE Alu 1 313 0 486 249 124 44 chr4 151856042 151856267 -32432395 + MLT1L LTR MaLR 369 611 -4 23 0 0 0 chr4 151857085 151857108 -32431554 + AT_rich Low_complexity Low_complexity 1 23 0 2165 93 0 14 chr4 151857576 151857865 -32430797 - AluSx SINE Alu -15 297 13 766 116 16 23 chr4 151857965 151858094 -32430568 + AluSg/x SINE Alu 180 307 -3 4638 139 19 35 chr4 151858133 151858994 -32429668 + L1MB7 LINE L1 5293 6139 -45 1074 179 0 0 chr4 151858996 151859169 -32429493 + FAM SINE Alu 2 174 -1 1038 198 0 0 chr4 151859831 151860008 -32428654 - FRAM SINE Alu 0 176 1 452 288 64 25 chr4 151860009 151860245 -32428417 + L1ME LINE L1 5417 5661 -460 1347 164 0 0 chr4 151860257 151860452 -32428210 - AluJb SINE Alu -32 280 86 2127 89 0 7 chr4 151860457 151860773 -32427889 - AluY SINE Alu 0 327 14 1821 161 3 14 chr4 151861501 151861678 -32426984 - AluJo SINE Alu 0 310 136 2077 145 0 6 chr4 151861678 151861989 -32426673 - AluSx SINE Alu -3 309 1 1821 161 3 14 chr4 151861989 151862124 -32426538 - AluJo SINE Alu -174 136 1 307 284 63 11 chr4 151862318 151862413 -32426249 - MIR3 SINE MIR -95 113 14 2012 128 17 3 chr4 151863019 151863307 -32425355 + AluSx SINE Alu 1 292 -20 593 240 7 14 chr4 151863339 151863626 -32425036 + (TATATG)n Simple_repeat Simple_repeat 1 284 0 251 237 0 72 chr4 151863627 151863724 -32424938 + L1MC4 LINE L1 6614 6703 -1339 230 180 49 0 chr4 151863772 151863833 -32424829 - L1MCa LINE L1 -4357 2069 2006 2046 130 3 13 chr4 151863919 151864090 -32424572 - AluSq SINE Alu -8 305 137 2242 120 7 3 chr4 151864090 151864398 -32424264 - AluSq SINE Alu -4 309 1 2046 130 3 13 chr4 151864398 151864534 -32424128 - AluSq SINE Alu -176 137 1 286 213 125 56 chr4 151864652 151864812 -32423850 + L1MC5 LINE L1 7623 7793 -168 1637 194 93 35 chr4 151864831 151865229 -32423433 - LTR40c LTR ERVL -6 459 39 3140 226 46 48 chr4 151865269 151866099 -32422563 - HERVL40 LTR ERVL -1 5529 4702 1014 123 201 0 chr4 151866122 151866301 -32422361 + MER20 DNA MER1_type 1 215 -4 615 128 11 11 chr4 151866341 151866435 -32422227 + AluJ/FLAM SINE Alu 1 94 -218 2566 264 104 46 chr4 151866439 151866988 -32421674 - HERVL40 LTR ERVL -1725 3805 3179 1675 166 22 4 chr4 151866988 151867265 -32421397 + AluJo SINE Alu 7 288 -24 2566 264 104 46 chr4 151867265 151867636 -32421026 - HERVL40 LTR ERVL -2351 3179 2831 1063 233 88 44 chr4 151867634 151867956 -32420706 - HERVL40 LTR ERVL -3123 2407 2068 * 234 0 0 0 chr4 151867956 151867982 -32420680 + (CA)n Simple_repeat Simple_repeat 2 27 0 1063 233 88 44 chr4 151867982 151868002 -32420660 - HERVL40 LTR ERVL -3462 2068 2050 37 0 0 54 chr4 151868148 151868170 -32420492 + AT_rich Low_complexity Low_complexity 1 23 -30 2177 98 3 7 chr4 151868170 151868455 -32420207 + AluSp SINE Alu 3 286 -27 37 0 0 54 chr4 151868455 151868488 -32420174 + AT_rich Low_complexity Low_complexity 23 53 0 1446 144 88 53 chr4 151868567 151868875 -32419787 - Cheshire DNA MER1_type -8 2412 2089 2354 85 0 50 chr4 151868875 151869193 -32419469 - AluSx SINE Alu -10 302 1 1446 144 88 53 chr4 151869193 151869223 -32419439 - Cheshire DNA MER1_type -331 2089 2062 524 248 49 106 chr4 151869224 151869367 -32419295 - Cheshire DNA MER1_type -2044 376 251 786 146 7 44 chr4 151869367 151869504 -32419158 + FLAM_C SINE Alu 1 132 -1 524 248 49 106 chr4 151869504 151869606 -32419056 - Cheshire DNA MER1_type -2169 251 145 1547 135 4 4 chr4 151869706 151869936 -32418726 - AluSq SINE Alu -83 230 1 39 38 0 0 chr4 151869936 151869989 -32418673 + AT_rich Low_complexity Low_complexity 1 53 0 379 289 198 32 chr4 151870049 151870388 -32418274 - L2 LINE L2 -1622 1692 1298 213 65 0 0 chr4 151870744 151870775 -32417887 + (A)n Simple_repeat Simple_repeat 1 31 0 236 284 111 25 chr4 151871217 151871298 -32417364 - MIR3 SINE MIR -119 89 2 804 180 0 0 chr4 151871458 151871586 -32417076 - FLAM_A SINE Alu -5 128 1 1423 152 0 25 chr4 151871705 151871942 -32416720 + AluSx SINE Alu 55 285 -27 2204 99 14 0 chr4 151873175 151873467 -32415195 + AluSq SINE Alu 2 297 -16 373 285 152 0 chr4 151873519 151873684 -32414978 - MIR SINE MIR -71 191 2 185 211 19 19 chr4 151875877 151875929 -32412733 + L2 LINE L2 2336 2387 -927 * 314 285 133 25 chr4 151875928 151876086 -32412576 + MIR SINE MIR 18 192 -70 845 188 0 7 chr4 151876250 151876394 -32412268 + AluJo SINE Alu 3 145 -167 1911 54 75 21 chr4 151876395 151876675 -32411987 + AluSq SINE Alu 1 295 -18 395 190 70 50 chr4 151877059 151877159 -32411503 + L1MB2 LINE L1 6030 6131 -40 594 196 0 0 chr4 151877167 151877274 -32411388 + FLAM_A SINE Alu 10 116 -26 1178 168 10 10 chr4 151877305 151877502 -32411160 + AluJo SINE Alu 1 197 -115 2026 102 0 8 chr4 151877502 151877767 -32410895 + AluSx SINE Alu 30 292 -20 297 75 0 0 chr4 151877767 151877807 -32410855 + (TA)n Simple_repeat Simple_repeat 2 41 0 425 200 8 77 chr4 151878098 151878170 -32410492 - MER112 DNA MER1_type -37 223 162 1424 165 114 7 chr4 151878170 151878442 -32410220 + AluJb SINE Alu 1 301 -11 425 200 8 77 chr4 151878442 151878499 -32410163 - MER112 DNA MER1_type -98 162 103 2217 112 0 0 chr4 151878500 151878794 -32409868 + AluSx SINE Alu 1 294 -18 241 159 286 0 chr4 151878795 151878858 -32409804 - MER7A DNA MER2_type -267 79 1 280 114 45 0 chr4 151879303 151879373 -32409289 + Alu SINE Alu 239 310 0 2884 107 13 39 chr4 151879531 151879990 -32408672 - L1PA13 LINE L1 -1 6162 5716 430 194 29 143 chr4 151880147 151880191 -32408471 - MLT1J LTR MaLR -30 481 434 2356 97 0 0 chr4 151880191 151880489 -32408173 + AluSg SINE Alu 1 298 -12 430 194 29 143 chr4 151880489 151880619 -32408043 - MLT1J LTR MaLR -77 434 327 794 211 70 18 chr4 151880651 151880822 -32407840 + AluJo SINE Alu 121 300 -12 505 278 124 39 chr4 151880822 151881056 -32407606 - MLT1J LTR MaLR -242 269 16 202 227 253 0 chr4 151881072 151881147 -32407515 + MIR SINE MIR 163 256 -6 1950 142 6 19 chr4 151881273 151881589 -32407073 - AluSx SINE Alu 0 312 1 3522 121 76 95 chr4 151881669 151881978 -32406684 + MER4D LTR ERV1 1 314 -589 1819 158 0 11 chr4 151881978 151882263 -32406399 - AluJb SINE Alu -30 282 1 3522 121 76 95 chr4 151882263 151882687 -32405975 + MER4D LTR ERV1 314 720 -183 2248 95 0 3 chr4 151882692 151882986 -32405676 - AluSq SINE Alu -8 305 13 1811 166 0 3 chr4 151884302 151884591 -32404071 + AluJb SINE Alu 7 294 -18 422 335 56 30 chr4 151886880 151887077 -32401585 - MIR SINE MIR -13 249 48 470 262 153 0 chr4 151887691 151887874 -32400788 + MIR SINE MIR 1 211 -51 225 306 83 7 chr4 151887905 151888049 -32400613 + L2 LINE L2 2477 2631 -683 534 254 88 31 chr4 151889351 151889544 -32399118 + L1MC4a LINE L1 5721 5924 -1884 25 0 0 0 chr4 151889840 151889865 -32398797 + AT_rich Low_complexity Low_complexity 1 25 0 248 241 0 0 chr4 151890508 151890562 -32398100 - L1ME LINE L1 -377 5787 5734 374 250 47 28 chr4 151890617 151890752 -32397910 - L1ME LINE L1 -393 5728 5590 1873 139 7 18 chr4 151891735 151892016 -32396646 + AluJb SINE Alu 1 278 -34 247 91 45 0 chr4 151892028 151892072 -32396590 + AluJb SINE Alu 257 302 0 413 268 56 71 chr4 151892155 151892424 -32396238 + L2 LINE L2 3000 3264 -49 189 0 0 0 chr4 151892424 151892445 -32396217 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1400 133 0 8 chr4 151892546 151892794 -32395868 - SVA Other Other -709 677 432 208 268 71 18 chr4 151892821 151892877 -32395785 + L2 LINE L2 3213 3271 -1 24 53 0 0 chr4 151892967 151893005 -32395657 + AT_rich Low_complexity Low_complexity 1 38 0 2306 98 0 3 chr4 151895152 151895448 -32393214 + AluSc SINE Alu 1 295 -14 2236 131 0 6 chr4 151896147 151896461 -32392201 + AluSx SINE Alu 1 312 0 2877 164 65 37 chr4 151896690 151897155 -32391507 - MER68 LTR ERV1 -10 552 69 1798 130 94 0 chr4 151897155 151897431 -32391231 + AluSq SINE Alu 1 302 -11 2877 164 65 37 chr4 151897431 151897502 -32391160 - MER68 LTR ERV1 -493 69 1 640 42 0 0 chr4 151897611 151897682 -32390980 + AluSq/x SINE Alu 73 143 -170 2963 64 6 8 chr4 151897682 151898043 -32390619 + L1PA8 LINE L1 5805 6164 -8 1234 150 0 0 chr4 151898078 151898265 -32390397 + AluSg/x SINE Alu 114 300 -12 724 68 0 15 chr4 151898266 151898388 -32390274 + L1PA5 LINE L1 5925 6146 -8 222 37 0 0 chr4 151898388 151898415 -32390247 + (TA)n Simple_repeat Simple_repeat 1 27 0 510 273 93 16 chr4 151898732 151898926 -32389736 + L2 LINE L2 2889 3097 -216 2492 66 0 3 chr4 151899643 151899946 -32388716 + AluY SINE Alu 1 302 -9 343 299 26 17 chr4 151900004 151900145 -32388517 + MIR SINE MIR 4 154 -59 963 159 67 31 chr4 151900153 151900348 -32388314 + MER3 DNA MER1_type 2 203 -6 187 217 17 100 chr4 151900391 151900451 -32388211 + L2 LINE L2 3210 3264 -8 27 92 0 0 chr4 151901157 151901233 -32387429 + AT_rich Low_complexity Low_complexity 1 76 0 21 0 0 0 chr4 151901326 151901347 -32387315 + AT_rich Low_complexity Low_complexity 1 21 0 2280 94 0 3 chr4 151901430 151901746 -32386916 + AluSx SINE Alu 1 315 0 6842 133 19 18 chr4 151901802 151902758 -32385904 - L1MA5A LINE L1 -5 6292 5339 1706 157 4 4 chr4 151902758 151903025 -32385637 - AluJb SINE Alu -10 302 36 6842 133 19 18 chr4 151903025 151904130 -32384532 - L1MA5A LINE L1 -958 5339 4220 2186 119 0 10 chr4 151904131 151904426 -32384236 - AluSx SINE Alu -20 292 1 2133 130 3 0 chr4 151904978 151905270 -32383392 + AluSx SINE Alu 7 299 -13 1244 128 0 0 chr4 151905277 151905449 -32383213 + AluSg/x SINE Alu 125 296 -16 2265 88 3 44 chr4 151905451 151905596 -32383066 + AluSx SINE Alu 1 150 -162 2480 79 0 3 chr4 151905596 151905901 -32382761 + AluSp SINE Alu 1 304 -9 2265 88 3 44 chr4 151905901 151906073 -32382589 + AluSx SINE Alu 150 305 -7 2259 94 7 3 chr4 151906483 151906782 -32381880 + AluSx SINE Alu 1 300 -12 2234 110 0 0 chr4 151906896 151907178 -32381484 + AluSg SINE Alu 1 282 -28 180 111 0 0 chr4 151907178 151907205 -32381457 + (TA)n Simple_repeat Simple_repeat 2 28 0 2236 104 3 0 chr4 151907216 151907513 -32381149 + AluSx SINE Alu 6 303 -9 21 36 0 0 chr4 151908113 151908141 -32380521 + AT_rich Low_complexity Low_complexity 1 28 0 2258 121 0 0 chr4 151908769 151909074 -32379588 + AluSx SINE Alu 1 305 -7 339 304 0 0 chr4 151909679 151909817 -32378845 - L1MC4 LINE L1 -1339 6703 6614 2564 69 0 0 chr4 151909822 151910126 -32378536 - AluY SINE Alu -7 304 1 2359 93 0 0 chr4 151910971 151911272 -32377390 - AluSc SINE Alu -8 301 1 288 0 0 0 chr4 151911728 151911760 -32376902 + (TG)n Simple_repeat Simple_repeat 2 33 0 1908 148 10 7 chr4 151912252 151912550 -32376112 + AluSx SINE Alu 1 299 -13 668 249 11 50 chr4 151912732 151912913 -32375749 - FAM SINE Alu -1 174 1 2181 90 7 4 chr4 151913189 151913497 -32375165 + AluSx SINE Alu 9 317 0 830 203 63 0 chr4 151913564 151913722 -32374940 + AluSg/x SINE Alu 137 304 -8 967 242 27 27 chr4 151914012 151914268 -32374394 - MIR SINE MIR 0 262 7 1775 147 157 37 chr4 151914344 151914746 -32373916 - LTR7 LTR ERV1 0 450 1 402 159 0 0 chr4 151916331 151916400 -32372262 + Alu SINE Alu 240 308 -2 1767 161 31 3 chr4 151916768 151917059 -32371603 - AluJb SINE Alu -13 299 1 328 259 96 108 chr4 151917459 151917531 -32371131 + MIR SINE MIR 99 170 -92 1239 189 35 8 chr4 151917531 151917785 -32370877 + L1MB8 LINE L1 5902 6162 -16 328 259 96 108 chr4 151917785 151917878 -32370784 + MIR SINE MIR 170 262 0 344 277 7 29 chr4 151918149 151918286 -32370376 - L1M4 LINE L1 -1128 5018 4885 23 0 0 0 chr4 151918336 151918359 -32370303 + AT_rich Low_complexity Low_complexity 1 23 0 938 210 30 5 chr4 151918366 151918566 -32370096 - AluJo SINE Alu -22 290 86 1751 184 0 0 chr4 151918589 151918883 -32369779 + AluJb SINE Alu 1 294 -18 192 77 0 0 chr4 151920461 151920487 -32368175 + (GA)n Simple_repeat Simple_repeat 1 26 0 2480 50 3 0 chr4 151920563 151920861 -32367801 + AluY SINE Alu 1 299 -12 1945 118 32 4 chr4 151920890 151921169 -32367493 + AluSq SINE Alu 1 287 -26 2045 143 0 13 chr4 151923279 151923593 -32365069 + AluJb SINE Alu 1 310 -2 441 0 0 0 chr4 151923695 151923744 -32364918 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 352 124 258 62 chr4 151923745 151923842 -32364820 - AluSg SINE Alu -207 93 1 1141 159 0 0 chr4 151924020 151924190 -32364472 + AluJb SINE Alu 137 306 -6 745 154 8 0 chr4 151924625 151924742 -32363920 + FLAM_C SINE Alu 1 118 -25 813 229 0 0 chr4 151926812 151926969 -32361693 + FRAM SINE Alu 1 157 -19 389 231 87 127 chr4 151927424 151927488 -32361174 + L1ME4a LINE L1 5255 5320 -2488 2173 133 3 0 chr4 151927488 151927788 -32360874 + AluSx SINE Alu 1 301 -11 389 231 87 127 chr4 151927788 151927824 -32360838 + L1ME4a LINE L1 5320 5356 -2452 2291 94 0 7 chr4 151927824 151928132 -32360530 + AluY SINE Alu 1 306 -5 389 231 87 127 chr4 151928132 151928259 -32360403 + L1ME4a LINE L1 5356 5474 -2334 250 250 45 18 chr4 151928342 151928454 -32360208 + L1ME4a LINE L1 5650 5764 -357 362 238 52 98 chr4 151928534 151928648 -32360014 + L1ME4a LINE L1 5938 6041 -80 1449 227 3 3 chr4 151928648 151928952 -32359710 - AluSg SINE Alu -6 304 1 362 238 52 98 chr4 151928952 151929030 -32359632 + L1ME4a LINE L1 6041 6121 0 1669 166 25 0 chr4 151929121 151929452 -32359210 - AluJb SINE Alu 0 338 1 626 228 167 40 chr4 151929737 151929942 -32358720 - MIR SINE MIR -4 258 20 2189 116 0 0 chr4 151929942 151930235 -32358427 + AluSx SINE Alu 1 293 -19 626 228 167 40 chr4 151930235 151930257 -32358405 - MIR SINE MIR -242 20 2 1680 169 23 16 chr4 151930673 151930980 -32357682 + AluJo SINE Alu 1 309 -3 559 149 0 0 chr4 151932437 151932524 -32356138 + AluSg SINE Alu 37 123 -187 2285 59 3 14 chr4 151932761 151933049 -32355613 - AluY SINE Alu -26 285 1 253 348 177 7 chr4 151933135 151933276 -32355386 + L3 LINE CR1 1370 1534 -43 719 160 0 23 chr4 151933337 151933468 -32355194 + FLAM_C SINE Alu 1 128 -5 2208 107 40 0 chr4 151933694 151933992 -32354670 - AluSg SINE Alu 0 310 1 303 65 0 65 chr4 151933994 151934056 -32354606 + (TTTC)n Simple_repeat Simple_repeat 1 58 0 1666 143 28 56 chr4 151934056 151934377 -32354285 - AluJo SINE Alu 0 312 1 213 39 0 0 chr4 151934486 151934512 -32354150 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 877 96 0 0 chr4 151935185 151935300 -32353362 + AluSg/x SINE Alu 178 292 -20 522 251 30 150 chr4 151935465 151935621 -32353041 + MIR SINE MIR 6 118 -144 2404 89 0 0 chr4 151935621 151935923 -32352739 + AluSg SINE Alu 1 302 -8 522 251 30 150 chr4 151935923 151936033 -32352629 + MIR SINE MIR 118 240 -22 243 267 67 13 chr4 151936030 151936105 -32352557 + L2 LINE L2 2984 3062 -251 * 284 204 0 0 chr4 151936185 151936229 -32352433 + L2 LINE L2 3252 3295 -18 243 0 0 0 chr4 151936232 151936259 -32352403 + (TG)n Simple_repeat Simple_repeat 1 27 0 1669 141 11 39 chr4 151938536 151938820 -32349842 - AluJb SINE Alu -12 300 25 200 57 0 29 chr4 151938889 151938924 -32349738 + (TTGG)n Simple_repeat Simple_repeat 4 37 0 186 43 0 0 chr4 151938925 151938948 -32349714 + (TGGA)n Simple_repeat Simple_repeat 4 26 0 2499 72 0 0 chr4 151939136 151939441 -32349221 - AluY SINE Alu -6 305 1 258 185 12 0 chr4 151989604 151989659 -32299003 - AluJb SINE Alu -260 40 2 189 178 0 0 chr4 151989848 151989893 -32298769 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 24 32 0 0 chr4 151990088 151990119 -32298543 + AT_rich Low_complexity Low_complexity 1 31 0 650 195 0 8 chr4 151990119 151990242 -32298420 - FLAM_C SINE Alu -15 128 7 2127 113 0 0 chr4 151990466 151990759 -32297903 - AluSx SINE Alu -19 293 1 1959 125 7 17 chr4 151990761 151991058 -32297604 - AluSx SINE Alu -18 294 1 2196 97 0 56 chr4 151991378 151991698 -32296964 - AluSq SINE Alu -11 302 1 1651 75 0 5 chr4 151992337 151992537 -32296125 - AluSq SINE Alu -114 199 1 566 243 0 0 chr4 151995686 151995793 -32292869 - FLAM_A SINE Alu -27 115 9 658 221 8 0 chr4 151995872 151995994 -32292668 - FLAM_A SINE Alu -10 123 1 639 131 31 9 chr4 151996316 151996576 -32292086 + AluSx SINE Alu 1 306 -6 295 188 71 35 chr4 151996691 151996776 -32291886 - L1MC5 LINE L1 -42 7919 7832 22 0 0 0 chr4 151996893 151996915 -32291747 + AT_rich Low_complexity Low_complexity 1 22 0 1358 148 59 42 chr4 151997410 151997647 -32291015 + AluJo SINE Alu 1 241 -71 2163 129 3 0 chr4 151997762 151998064 -32290598 - AluSx SINE Alu -9 303 1 2536 73 0 0 chr4 151998173 151998475 -32290187 - AluY SINE Alu -9 302 1 2213 108 0 16 chr4 151998475 151998782 -32289880 - AluSx SINE Alu -10 302 1 867 175 21 0 chr4 151999215 151999358 -32289304 + MER2 DNA MER2_type 1 146 -199 2269 72 0 0 chr4 151999366 151999677 -32288985 - AluY SINE Alu 0 316 6 403 155 0 0 chr4 151999677 151999735 -32288927 - AluJ/FRAM SINE Alu -31 271 214 2284 104 0 16 chr4 151999843 152000152 -32288510 + AluSx SINE Alu 1 304 -8 32 26 0 0 chr4 152000781 152000820 -32287842 + AT_rich Low_complexity Low_complexity 1 39 0 270 286 143 16 chr4 152000899 152001088 -32287574 - MIR SINE MIR -49 213 1 506 315 0 7 chr4 152002105 152002254 -32286408 + L2 LINE L2 2838 2985 -328 515 287 103 31 chr4 152002335 152002722 -32285940 - L1MEd LINE L1 -5221 898 484 290 254 24 32 chr4 152002976 152003102 -32285560 - L1MEd LINE L1 -5988 131 7 649 303 104 19 chr4 152003109 152003426 -32285236 + L2 LINE L2 2968 3311 -2 352 303 38 8 chr4 152003426 152003558 -32285104 - MIR SINE MIR -43 219 84 321 89 0 0 chr4 152003615 152003660 -32285002 + (TGG)n Simple_repeat Simple_repeat 1 45 0 1495 99 0 0 chr4 152003765 152003957 -32284705 - AluSx SINE Alu -12 300 109 2452 104 8 8 chr4 152003957 152004312 -32284350 + THE1A LTR MaLR 1 355 0 749 150 0 9 chr4 152004312 152004425 -32284237 - AluSx SINE Alu -200 113 2 878 139 7 15 chr4 152004711 152004848 -32283814 - AluJo SINE Alu -176 136 1 2098 121 3 7 chr4 152005518 152005815 -32282847 - AluSx SINE Alu -16 296 1 2802 200 109 18 chr4 152006031 152006702 -32281960 - L1ME1 LINE L1 -5 6161 5430 279 191 0 0 chr4 152006709 152006772 -32281890 + CT-rich Low_complexity Low_complexity 1 63 0 1555 155 9 104 chr4 152006775 152007111 -32281551 - AluSp SINE Alu -9 304 1 1721 171 0 28 chr4 152007115 152007402 -32281260 - AluJo SINE Alu -32 280 2 189 178 0 0 chr4 152007607 152007652 -32281010 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 24 32 0 0 chr4 152007847 152007878 -32280784 + AT_rich Low_complexity Low_complexity 1 31 0 778 146 0 8 chr4 152007878 152008001 -32280661 - FLAM_C SINE Alu -15 128 7 188 267 93 35 chr4 152008139 152008225 -32280437 + MIR SINE MIR 81 171 -91 2242 107 0 0 chr4 152008225 152008516 -32280146 - AluSg SINE Alu -19 291 1 2312 100 0 3 chr4 152008718 152009018 -32279644 + AluSp SINE Alu 1 299 -14 1556 191 11 14 chr4 152009020 152009302 -32279360 - AluJo SINE Alu -30 282 2 440 280 76 81 chr4 152009661 152010068 -32278594 + L1MEd LINE L1 34 438 -5681 804 137 30 15 chr4 152010079 152010210 -32278452 - FLAM_C SINE Alu 0 133 1 426 239 26 43 chr4 152010411 152010528 -32278134 - L2 LINE L2 0 3313 3199 1367 132 0 0 chr4 152010530 152010729 -32277933 - Tigger7 DNA MER2_type 0 2487 2289 470 219 0 0 chr4 152010729 152010811 -32277851 + Tigger5 DNA MER2_type 4 85 -2238 307 171 12 110 chr4 152010809 152010891 -32277771 - Tigger5 DNA MER2_type -8 2315 2242 * 269 145 258 0 chr4 152010885 152010947 -32277715 + Tigger5 DNA MER2_type 2246 2323 0 * 2072 173 38 32 chr4 152010952 152011352 -32277310 - Tigger7 DNA MER2_type -233 500 99 2703 186 29 2 chr4 152011353 152011832 -32276830 + L1M2 LINE L1 4 495 -6354 4975 230 59 24 chr4 152011849 152012928 -32275734 + L1M2 LINE L1 677 1805 -5044 2125 129 7 7 chr4 152012928 152013238 -32275424 + AluSq SINE Alu 1 310 -3 4975 230 59 24 chr4 152013238 152013375 -32275287 + L1M2 LINE L1 1805 1936 -4913 1719 174 10 17 chr4 152013375 152013668 -32274994 + AluJb SINE Alu 1 291 -21 366 61 0 0 chr4 152013670 152013719 -32274943 + (TG)n Simple_repeat Simple_repeat 2 50 0 841 158 25 41 chr4 152013719 152013759 -32274903 + L1 LINE L1 4605 4644 -1502 2004 151 3 7 chr4 152013759 152014064 -32274598 + AluSx SINE Alu 1 304 -8 841 158 25 41 chr4 152014064 152014219 -32274443 + L1 LINE L1 4644 4797 -1349 953 197 4 86 chr4 152014219 152014452 -32274210 + AluJb SINE Alu 84 297 -15 266 253 0 0 chr4 152014608 152014683 -32273979 + L1MEd LINE L1 640 714 -5405 2074 120 27 3 chr4 152014691 152014991 -32273671 + AluSg SINE Alu 1 307 -3 1194 147 5 5 chr4 152015129 152015319 -32273343 - AluSg/x SINE Alu -10 300 111 287 176 0 47 chr4 152015333 152015418 -32273244 + G-rich Low_complexity Low_complexity 1 81 0 180 306 111 14 chr4 152015961 152016033 -32272629 + MIR SINE MIR 20 98 -164 1898 131 7 0 chr4 152016035 152016309 -32272353 - AluSx SINE Alu -36 276 1 478 78 69 49 chr4 152016309 152016411 -32272251 + Tigger3(Golem) DNA MER2_type 2329 2432 -597 1549 161 16 8 chr4 152016416 152016670 -32271992 - AluJo SINE Alu -54 258 3 207 0 0 0 chr4 152016676 152016699 -32271963 + (TG)n Simple_repeat Simple_repeat 2 24 0 1275 199 10 27 chr4 152016700 152016992 -32271670 - AluSx SINE Alu -23 289 3 385 243 69 21 chr4 152016995 152017184 -32271478 - L1PA5 LINE L1 0 6154 5957 1981 125 0 53 chr4 152017405 152017724 -32270938 + AluSq SINE Alu 1 302 -11 428 204 172 0 chr4 152017730 152017823 -32270839 - FLAM_C SINE Alu -33 110 2 289 145 49 92 chr4 152017889 152018016 -32270646 - Alu SINE Alu -2 299 245 29 32 0 0 chr4 152018041 152018072 -32270590 + GC_rich Low_complexity Low_complexity 1 31 0 35 24 0 0 chr4 152018142 152018184 -32270478 + GC_rich Low_complexity Low_complexity 1 42 0 430 183 0 0 chr4 152018284 152018355 -32270307 - MER8 DNA MER2_type -168 71 1 1360 100 0 0 chr4 152018387 152018557 -32270105 + AluSp SINE Alu 1 170 -143 470 86 0 14 chr4 152018557 152018627 -32270035 - Alu SINE Alu -241 69 1 1433 161 59 13 chr4 152018629 152018934 -32269728 - L1M4 LINE L1 -1228 4918 4600 1630 135 64 0 chr4 152019487 152019783 -32268879 - AluSg SINE Alu 0 313 1 279 254 0 0 chr4 152019791 152019854 -32268808 - L1MEd LINE L1 -5405 714 652 759 152 0 32 chr4 152019954 152020079 -32268583 - AluSg/x SINE Alu -27 285 165 223 152 43 0 chr4 152020311 152020357 -32268305 - L2 LINE L2 0 3313 3266 2397 72 14 0 chr4 152020608 152020901 -32267761 + AluSp SINE Alu 1 297 -16 2287 91 3 0 chr4 152021369 152021656 -32267006 + AluSx SINE Alu 10 297 -15 25 0 0 0 chr4 152021658 152021683 -32266979 + AT_rich Low_complexity Low_complexity 1 25 0 2466 68 0 7 chr4 152021883 152022179 -32266483 - AluY SINE Alu -15 296 3 307 111 0 19 chr4 152022378 152022432 -32266230 - FLAM SINE Alu -8 125 73 634 123 0 61 chr4 152022554 152022668 -32265994 - MER1B DNA MER1_type -1 338 232 274 136 0 0 chr4 152022665 152022709 -32265953 + MER1B DNA MER1_type 67 110 -187 * 1463 136 4 21 chr4 152022830 152023066 -32265596 + AluSg/x SINE Alu 81 312 0 2258 99 0 3 chr4 152023180 152023472 -32265190 + AluSc SINE Alu 1 291 -18 2162 103 0 3 chr4 152024035 152024336 -32264326 - AluSx SINE Alu -12 300 1 1956 125 10 14 chr4 152024338 152024633 -32264029 - AluSx SINE Alu -18 294 1 668 144 10 0 chr4 152025594 152025698 -32262964 - AluJb SINE Alu -14 298 194 328 178 78 22 chr4 152026612 152026702 -32261960 - HsTC2 DNA Tc2 -3 1895 1801 2331 73 0 13 chr4 152026708 152027011 -32261651 - AluY SINE Alu -12 299 1 6448 134 16 113 chr4 152027011 152027259 -32261403 - L1 LINE L1 -1258 6307 6037 2163 117 7 3 chr4 152027259 152027558 -32261104 - AluSg SINE Alu -10 300 1 6448 134 16 113 chr4 152027558 152028053 -32260609 - L1 LINE L1 -1528 6037 5496 755 104 44 59 chr4 152028053 152028188 -32260474 - AluSg/x SINE Alu -36 274 142 6448 134 16 113 chr4 152028188 152028944 -32259718 - L1 LINE L1 -2069 5496 4831 * 17283 141 78 18 chr4 152028935 152032134 -32256528 - L1 LINE L1 -4168 3397 9 731 240 34 106 chr4 152032467 152032504 -32256158 - L1MDb LINE L1 -4994 1224 1186 2269 111 0 40 chr4 152032504 152032829 -32255833 - AluSx SINE Alu 0 312 1 731 240 34 106 chr4 152032829 152033148 -32255514 - L1MDb LINE L1 -5032 1186 989 2156 115 13 29 chr4 152033148 152033462 -32255200 - AluSx SINE Alu -3 309 1 731 240 34 106 chr4 152033462 152033867 -32254795 - L1MDb LINE L1 -5229 989 557 307 269 65 65 chr4 152034202 152034481 -32254181 - L1MDb LINE L1 -5829 567 289 778 186 0 0 chr4 152034867 152034996 -32253666 - FLAM_C SINE Alu -12 131 3 23 33 0 0 chr4 152035212 152035242 -32253420 + AT_rich Low_complexity Low_complexity 1 30 0 2305 82 3 0 chr4 152035242 152035524 -32253138 + AluSp SINE Alu 1 283 -30 345 47 0 0 chr4 152035527 152035570 -32253092 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 698 186 0 0 chr4 152035587 152035705 -32252957 - FLAM_C SINE Alu -15 118 1 576 79 11 0 chr4 152036126 152036215 -32252447 - L1MA4A LINE L1 -11 6292 6203 189 0 0 0 chr4 152036313 152036334 -32252328 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 508 270 201 0 chr4 152037670 152037859 -32250803 + MIR SINE MIR 24 250 -12 410 230 0 0 chr4 152037930 152038003 -32250659 + 5S rRNA rRNA 5 77 -44 2569 137 78 65 chr4 152038003 152038121 -32250541 - Tigger1 DNA MER2_type 0 2418 2303 315 0 0 0 chr4 152038121 152038156 -32250506 + (TG)n Simple_repeat Simple_repeat 2 36 0 315 0 0 0 chr4 152038156 152038191 -32250471 + (CA)n Simple_repeat Simple_repeat 2 36 0 2569 137 78 65 chr4 152038191 152038208 -32250454 - Tigger1 DNA MER2_type -115 2303 2288 1950 152 3 3 chr4 152038208 152038497 -32250165 - AluJb SINE Alu -23 289 1 2569 137 78 65 chr4 152038497 152038945 -32249717 - Tigger1 DNA MER2_type -130 2288 1825 1758 152 0 8 chr4 152038945 152039209 -32249453 + AluJb SINE Alu 1 262 -50 9746 129 57 7 chr4 152039209 152040412 -32248250 - Tigger1 DNA MER2_type -674 1744 434 2314 94 7 0 chr4 152040412 152040711 -32247951 + AluSx SINE Alu 1 301 -11 9746 129 57 7 chr4 152040711 152041168 -32247494 - Tigger1 DNA MER2_type -1984 434 1 2210 82 0 63 chr4 152042088 152042406 -32246256 + AluY SINE Alu 1 298 -13 1733 173 0 20 chr4 152042871 152043166 -32245496 + AluJb SINE Alu 1 289 -23 1235 269 74 16 chr4 152043294 152043849 -32244813 - L1MC4a LINE L1 -1869 5939 5353 8753 57 4 187 chr4 152043869 152045565 -32243097 - SVA Other Other 0 1386 1 33 43 0 0 chr4 152045684 152045731 -32242931 + AT_rich Low_complexity Low_complexity 1 47 0 2295 115 0 10 chr4 152045731 152046043 -32242619 - AluSx SINE Alu -3 309 1 1599 201 4 4 chr4 152046206 152046479 -32242183 - AluJb SINE Alu -39 273 1 837 239 104 0 chr4 152046647 152046877 -32241785 + MIR SINE MIR 9 262 0 305 255 131 52 chr4 152048029 152048182 -32240480 - L1ME3A LINE L1 -98 6072 5908 883 238 68 36 chr4 152048289 152048654 -32240008 - L1MC5 LINE L1 -518 7443 7067 731 206 0 0 chr4 152048663 152048794 -32239868 + FLAM_A SINE Alu 1 131 -2 369 202 46 17 chr4 152048824 152048997 -32239665 + (TA)n Simple_repeat Simple_repeat 1 178 0 568 216 29 97 chr4 152049008 152049318 -32239344 - L1MC5 LINE L1 -920 7041 6753 2217 95 50 0 chr4 152049322 152049659 -32239003 + THE1B LTR MaLR 5 358 -6 10402 114 39 0 chr4 152049665 152051186 -32237476 + THE1B-int LTR MaLR 1 1580 0 2693 63 22 22 chr4 152051186 152051550 -32237112 + THE1B LTR MaLR 1 364 0 544 237 24 15 chr4 152051550 152051677 -32236985 - L1MC5 LINE L1 -1056 6758 6634 222 91 0 0 chr4 152051677 152051710 -32236952 + (CA)n Simple_repeat Simple_repeat 2 34 0 544 237 24 15 chr4 152051710 152051731 -32236931 - L1MC5 LINE L1 -1180 6634 6615 198 103 0 0 chr4 152051731 152051760 -32236902 + (TATATG)n Simple_repeat Simple_repeat 4 32 0 544 237 24 15 chr4 152051760 152051801 -32236861 - L1MC5 LINE L1 -1199 6615 6566 * 2909 203 35 67 chr4 152051798 152052818 -32235844 - L1 LINE L1 -2103 4043 2992 2237 98 0 0 chr4 152052818 152053105 -32235557 - AluSx SINE Alu -25 287 1 2909 203 35 67 chr4 152053105 152053126 -32235536 - L1 LINE L1 -3154 2992 2972 611 181 9 17 chr4 152053126 152053242 -32235420 - FLAM_A SINE Alu -18 115 1 2909 203 35 67 chr4 152053242 152053414 -32235248 - L1 LINE L1 -3174 2972 2796 1629 192 19 3 chr4 152053414 152053721 -32234941 - AluJb SINE Alu 0 312 1 2909 203 35 67 chr4 152053721 152053940 -32234722 - L1 LINE L1 -3350 2796 2728 9636 65 5 101 chr4 152053940 152055450 -32233212 - SVA Other Other -7 1379 15 2909 203 35 67 chr4 152055450 152055607 -32233055 - L1 LINE L1 -3418 2728 2568 198 103 0 0 chr4 152056517 152056546 -32232116 + (CA)n Simple_repeat Simple_repeat 2 30 0 349 283 36 7 chr4 152056620 152056758 -32231904 + MER20B DNA MER1_type 2 143 -640 532 254 154 33 chr4 152056812 152057209 -32231453 + MER20B DNA MER1_type 252 696 -87 367 233 48 27 chr4 152057213 152057359 -32231303 - MER104 DNA Tc2 -5 175 27 410 330 83 43 chr4 152057552 152057995 -32230667 - MLT1K LTR MaLR -3 585 125 703 152 23 0 chr4 152059171 152059303 -32229359 - L1MD1 LINE L1 0 6242 6108 7129 218 89 17 chr4 152059325 152062599 -32226063 - L1MD1 LINE L1 -188 6054 2554 2295 108 0 0 chr4 152062701 152062997 -32225665 + AluSg SINE Alu 1 296 -14 378 285 85 34 chr4 152063326 152063561 -32225101 - L1MC4a LINE L1 -1897 5911 5665 2359 108 43 6 chr4 152063690 152064041 -32224621 - THE1B LTR MaLR 0 364 1 195 143 0 61 chr4 152064379 152064428 -32224234 + MIR SINE MIR 179 224 -38 23 54 0 0 chr4 152064459 152064496 -32224166 + AT_rich Low_complexity Low_complexity 1 37 0 1855 201 97 9 chr4 152064548 152064982 -32223680 - MLT1F LTR MaLR 0 542 71 597 168 0 0 chr4 152065414 152065515 -32223147 + FLAM_A SINE Alu 36 136 -6 400 265 12 24 chr4 152065518 152065684 -32222978 - MER103 DNA DNA -1 165 2 2090 104 32 0 chr4 152066904 152067183 -32221479 - AluSq SINE Alu -13 300 13 2097 98 18 0 chr4 152067349 152067626 -32221036 + AluSg SINE Alu 1 282 -28 356 299 30 8 chr4 152067712 152067846 -32220816 + L1MEd LINE L1 645 781 -5338 23 33 0 0 chr4 152067856 152067886 -32220776 + AT_rich Low_complexity Low_complexity 1 30 0 1816 176 3 0 chr4 152068377 152068679 -32219983 - AluJo SINE Alu -9 303 1 1105 152 54 0 chr4 152068820 152069024 -32219638 - L1PB4 LINE L1 -2 6154 5940 2321 192 42 2 chr4 152069192 152069639 -32219023 - MLT1C LTR MaLR 0 467 3 21 0 0 0 chr4 152069861 152069882 -32218780 + AT_rich Low_complexity Low_complexity 1 21 0 866 274 104 42 chr4 152069907 152070388 -32218274 - MLT1J LTR MaLR 0 511 1 345 247 65 13 chr4 152073166 152073320 -32215342 - L1M4 LINE L1 -1486 4660 4499 2068 136 0 16 chr4 152073595 152073774 -32214888 - AluSx SINE Alu 0 312 139 2321 87 3 0 chr4 152073774 152074074 -32214588 - AluSp SINE Alu -12 301 1 2068 136 0 16 chr4 152074074 152074211 -32214451 - AluSx SINE Alu -173 139 1 359 247 65 0 chr4 152074276 152074369 -32214293 + L2 LINE L2 3170 3268 -4 1591 160 7 46 chr4 152074765 152075071 -32213591 - AluSx SINE Alu -18 294 1 675 259 134 60 chr4 152075266 152075418 -32213244 - L1MC4a LINE L1 -1882 5995 5856 1960 112 79 0 chr4 152075418 152075695 -32212967 - AluSx SINE Alu -13 299 1 675 259 134 60 chr4 152075695 152075858 -32212804 - L1MC4a LINE L1 -2021 5856 5707 1816 181 0 0 chr4 152075858 152076167 -32212495 - AluSx SINE Alu -3 309 1 675 259 134 60 chr4 152076167 152076438 -32212224 - L1MC4a LINE L1 -2170 5707 5364 742 219 12 12 chr4 152076715 152076879 -32211783 - FRAM SINE Alu -18 158 1 1521 181 24 27 chr4 152077030 152077322 -32211340 - AluJo SINE Alu -21 291 1 35 54 0 0 chr4 152077373 152077429 -32211233 + AT_rich Low_complexity Low_complexity 1 56 0 679 147 97 0 chr4 152077508 152077675 -32210987 + L1MD3 LINE L1 7725 7985 -10 279 219 73 0 chr4 152078172 152078268 -32210394 - L1MC4a LINE L1 -2268 3947 3845 1146 161 0 0 chr4 152078283 152078457 -32210205 - AluSg/x SINE Alu -5 307 134 2364 100 0 0 chr4 152078458 152078769 -32209893 - AluSx SINE Alu -1 311 1 53 17 0 0 chr4 152078946 152079006 -32209656 + AT_rich Low_complexity Low_complexity 1 60 0 23 0 0 0 chr4 152079522 152079545 -32209117 + AT_rich Low_complexity Low_complexity 1 23 0 1318 274 95 62 chr4 152081032 152081410 -32207252 - L1MEc LINE L1 -4816 1399 1035 2245 97 3 0 chr4 152081410 152081709 -32206953 - AluY SINE Alu -11 300 1 2214 110 3 0 chr4 152081709 152082009 -32206653 - AluSg SINE Alu -7 303 3 1318 274 95 62 chr4 152082009 152082809 -32205853 - L1MEc LINE L1 -5179 1036 224 384 281 14 27 chr4 152082823 152082969 -32205693 - L1MEc LINE L1 -6216 180 37 279 334 85 25 chr4 152083061 152083505 -32205157 + L1P4 LINE L1 5312 5779 -382 1613 179 65 0 chr4 152083610 152083900 -32204762 - AluJb SINE Alu -3 309 1 1745 188 3 3 chr4 152084261 152084570 -32204092 - AluJb SINE Alu -1 311 3 203 161 0 54 chr4 152085222 152085278 -32203384 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 292 281 152 60 chr4 152085321 152085593 -32203069 - L2 LINE L2 -219 3053 2758 320 93 0 0 chr4 152085611 152085653 -32203009 + Tigger5 DNA MER2_type 37 78 -2245 351 253 0 0 chr4 152085653 152085732 -32202930 - Tigger5 DNA MER2_type -3 2320 2242 * 518 171 0 0 chr4 152085722 152085804 -32202858 + Tigger5 DNA MER2_type 2242 2323 0 640 256 68 21 chr4 152085805 152085996 -32202666 + MIR SINE MIR 11 210 -52 2859 129 24 4 chr4 152086029 152086386 -32202276 - L1PB1 LINE L1 -3 6148 5778 207 0 0 0 chr4 152086386 152086409 -32202253 + (TA)n Simple_repeat Simple_repeat 1 23 0 2859 129 24 4 chr4 152086409 152086516 -32202146 - L1PB1 LINE L1 -373 5778 5675 24 67 0 0 chr4 152086547 152086592 -32202070 + AT_rich Low_complexity Low_complexity 1 45 0 1892 123 33 40 chr4 152086643 152086781 -32201881 + AluSx SINE Alu 1 138 -174 2182 92 14 0 chr4 152086781 152087074 -32201588 + AluSp SINE Alu 1 297 -16 1892 123 33 40 chr4 152087074 152087236 -32201426 + AluSx SINE Alu 138 299 -13 2293 94 0 0 chr4 152088240 152088537 -32200125 - AluSq SINE Alu -16 297 1 926 153 17 11 chr4 152089423 152089599 -32199063 - L1MB8 LINE L1 -6 6172 5996 3438 158 40 20 chr4 152089602 152090036 -32198626 - L1MB8 LINE L1 -235 5943 5519 2118 120 3 3 chr4 152090036 152090337 -32198325 - AluSx SINE Alu -11 301 1 3438 158 40 20 chr4 152090337 152090778 -32197884 - L1MB8 LINE L1 -659 5519 5051 475 154 57 49 chr4 152090768 152090849 -32197813 - L1MB8 LINE L1 -1360 4786 4702 * 2196 116 0 7 chr4 152090849 152091159 -32197503 - AluSq SINE Alu -5 308 1 475 154 57 49 chr4 152091159 152091200 -32197462 - L1MB8 LINE L1 -1444 4702 4663 21 0 0 0 chr4 152091270 152091291 -32197371 + AT_rich Low_complexity Low_complexity 1 21 0 2332 76 0 0 chr4 152091642 152091933 -32196729 - AluY SINE Alu -20 291 1 275 253 37 49 chr4 152092702 152092864 -32195798 + L1MC4 LINE L1 7883 8042 0 187 298 130 15 chr4 152093489 152093620 -32195042 + L3 LINE CR1 633 778 -799 648 267 74 23 chr4 152093771 152093988 -32194674 + MIR SINE MIR 18 245 -17 623 244 142 27 chr4 152094056 152094281 -32194381 - MIR SINE MIR -7 255 5 214 195 0 0 chr4 152094418 152094459 -32194203 + T-rich Low_complexity Low_complexity 1 41 0 1451 110 75 12 chr4 152094676 152094930 -32193732 + L1MA1 LINE L1 6025 6294 -8 2544 242 39 43 chr4 152094931 152095314 -32193348 + L1MB2 LINE L1 2287 2670 -3476 2144 128 3 0 chr4 152095314 152095619 -32193043 - AluSp SINE Alu -7 306 1 2544 242 39 43 chr4 152095619 152096114 -32192548 + L1MB2 LINE L1 2670 3161 -2985 3318 92 41 31 chr4 152096115 152096603 -32192059 - MER1A DNA MER1_type 0 529 37 8243 207 24 40 chr4 152096617 152099692 -32188970 + L1MB2 LINE L1 3153 6171 0 22 70 0 0 chr4 152100728 152100771 -32187891 + AT_rich Low_complexity Low_complexity 1 43 0 30 0 0 0 chr4 152101327 152101357 -32187305 + AT_rich Low_complexity Low_complexity 1 30 0 476 174 19 26 chr4 152101424 152101579 -32187083 + CT-rich Low_complexity Low_complexity 1 154 0 21 36 0 0 chr4 152103379 152103407 -32185255 + AT_rich Low_complexity Low_complexity 1 28 0 616 278 0 22 chr4 152104476 152104656 -32184006 - MER69A DNA AcHobo -1 176 1 547 279 110 0 chr4 152104815 152104951 -32183711 - L2 LINE L2 -1 3271 3121 1457 181 50 7 chr4 152105072 152105349 -32183313 - AluJb SINE Alu -23 289 1 1225 184 4 17 chr4 152105468 152105701 -32182961 - AluJo SINE Alu -78 234 5 490 231 10 108 chr4 152105899 152106008 -32182654 - MER5B DNA MER1_type -2 176 93 2604 84 10 48 chr4 152106008 152106400 -32182262 - MER51B LTR ERV1 0 377 1 490 231 10 108 chr4 152106400 152106485 -32182177 - MER5B DNA MER1_type -85 93 1 1852 145 14 3 chr4 152107498 152107780 -32180882 - AluSx SINE Alu -18 294 10 336 309 122 52 chr4 152109300 152109643 -32179019 - MLT1K LTR MaLR -12 576 210 201 265 20 0 chr4 152111315 152111364 -32177298 - L2 LINE L2 -1 3271 3222 23 54 0 0 chr4 152112415 152112452 -32176210 + AT_rich Low_complexity Low_complexity 1 37 0 5656 24 3 0 chr4 152112860 152113522 -32175140 + L1PA4 LINE L1 5491 6154 -1 2402 73 0 13 chr4 152114829 152115142 -32173520 + AluY SINE Alu 1 309 -2 1865 148 7 17 chr4 152115159 152115457 -32173205 + AluSx SINE Alu 1 295 -17 1226 240 27 40 chr4 152116159 152116534 -32172128 - MLT1A2 LTR MaLR 0 374 5 1553 133 4 4 chr4 152116702 152116935 -32171727 - AluJb SINE Alu -15 297 65 1822 177 73 56 chr4 152117040 152117435 -32171227 - MLT2D LTR ERVL -8 406 5 574 179 0 43 chr4 152117533 152117650 -32171012 - L1M4 LINE L1 -462 5716 5605 22 35 0 0 chr4 152118814 152118843 -32169819 + AT_rich Low_complexity Low_complexity 1 29 0 345 276 0 0 chr4 152118874 152118961 -32169701 + MER58A DNA MER1_type 48 134 0 * 516 262 0 0 chr4 152118961 152119061 -32169601 + MER58A DNA MER1_type 81 180 -44 1647 145 46 14 chr4 152119061 152119343 -32169319 - MER1B DNA MER1_type 0 339 49 613 143 0 0 chr4 152119349 152119447 -32169215 - AluY SINE Alu -220 98 1 1374 208 17 58 chr4 152119447 152119481 -32169181 + MLT2D LTR ERVL 82 116 -298 913 84 53 0 chr4 152119481 152119612 -32169050 + MER85 DNA T2_type 2 139 0 1374 208 17 58 chr4 152119612 152119924 -32168738 + MLT2D LTR ERVL 116 414 0 1097 252 105 85 chr4 152119930 152120812 -32167850 - L1MDb LINE L1 -3922 2158 1295 604 198 78 0 chr4 152120812 152120928 -32167734 - FLAM_A SINE Alu -5 128 4 1097 252 105 85 chr4 152120928 152121002 -32167660 - L1MDb LINE L1 -4785 1295 1224 2247 84 17 3 chr4 152121002 152121300 -32167362 - AluY SINE Alu -9 302 1 1097 252 105 85 chr4 152121300 152121667 -32166995 - L1MDb LINE L1 -4856 1224 866 664 145 58 7 chr4 152121667 152121805 -32166857 - L1MA5 LINE L1 -3 6297 6153 1097 252 105 85 chr4 152121805 152122170 -32166492 - L1MDb LINE L1 -5214 866 468 298 310 82 63 chr4 152122325 152122690 -32165972 - L1MDb LINE L1 -5622 448 77 1033 284 77 43 chr4 152122821 152123161 -32165501 - L1M4c LINE L1 -4633 1751 1424 1911 156 14 0 chr4 152123161 152123449 -32165213 - AluSx SINE Alu -20 292 1 1033 284 77 43 chr4 152123449 152124048 -32164614 - L1M4c LINE L1 -4960 1424 783 21 82 0 0 chr4 152125048 152125097 -32163565 + AT_rich Low_complexity Low_complexity 1 49 0 2151 105 3 0 chr4 152125322 152125617 -32163045 - AluSx SINE Alu -16 296 1 2283 98 3 0 chr4 152126696 152126992 -32161670 - AluSp SINE Alu -16 297 1 22 56 0 0 chr4 152127081 152127117 -32161545 + AT_rich Low_complexity Low_complexity 1 36 0 5214 128 16 10 chr4 152127117 152128259 -32160403 - L1PA16 LINE L1 -9 6860 5686 1811 181 3 0 chr4 152128259 152128558 -32160104 - AluJb SINE Alu -12 300 1 5214 128 16 10 chr4 152128558 152129030 -32159632 - L1PA16 LINE L1 -1183 5686 5218 12912 196 63 51 chr4 152129031 152130446 -32158216 - L1PA16 LINE L1 -1755 5094 3698 1953 140 7 20 chr4 152130446 152130746 -32157916 - AluSx SINE Alu -16 296 1 12912 196 63 51 chr4 152130746 152131521 -32157141 - L1PA16 LINE L1 -3151 3698 2934 2365 76 0 16 chr4 152131521 152131825 -32156837 - AluY SINE Alu -12 299 1 12912 196 63 51 chr4 152131825 152134688 -32153974 - L1PA16 LINE L1 -3915 2934 2 2265 109 3 0 chr4 152135184 152135488 -32153174 - AluSx SINE Alu -7 305 1 21 82 0 0 chr4 152135935 152135984 -32152678 + AT_rich Low_complexity Low_complexity 1 49 0 22 56 0 0 chr4 152136305 152136341 -32152321 + AT_rich Low_complexity Low_complexity 1 36 0 882 252 57 0 chr4 152136620 152136830 -32151832 + MER58A DNA MER1_type 1 222 -2 24 0 0 0 chr4 152136911 152136935 -32151727 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 152137115 152137136 -32151526 + AT_rich Low_complexity Low_complexity 1 21 0 2149 122 3 0 chr4 152137533 152137829 -32150833 - AluSx SINE Alu -9 303 7 670 118 0 20 chr4 152138919 152139021 -32149641 - AluJ/FLAM SINE Alu -210 102 3 24 53 0 0 chr4 152139030 152139068 -32149594 + AT_rich Low_complexity Low_complexity 1 38 0 1766 160 7 7 chr4 152139094 152139388 -32149274 - AluSx SINE Alu -18 294 1 1233 118 0 0 chr4 152139576 152139746 -32148916 + AluSg1 SINE Alu 1 170 -139 2184 132 0 0 chr4 152139828 152140139 -32148523 - AluSx SINE Alu -1 311 1 287 65 0 65 chr4 152141405 152141451 -32147211 - MADE1 DNA Mariner -37 43 1 189 0 0 0 chr4 152141661 152141682 -32146980 + (T)n Simple_repeat Simple_repeat 1 21 0 332 288 115 21 chr4 152141888 152142079 -32146583 - L1ME3A LINE L1 -200 5970 5762 378 273 40 84 chr4 152142083 152142480 -32146182 - L1ME3A LINE L1 -504 5658 5200 2155 113 7 0 chr4 152142779 152143079 -32145583 + AluSx SINE Alu 1 302 -10 548 286 25 0 chr4 152143349 152143510 -32145152 + MER58B DNA MER1_type 173 337 -4 2024 133 37 0 chr4 152143858 152144152 -32144510 + AluSx SINE Alu 1 305 -7 1800 157 50 55 chr4 152144189 152144560 -32144102 + Charlie1 DNA MER1_type 2343 2713 -48 2174 103 7 0 chr4 152144560 152144850 -32143812 + AluSc SINE Alu 3 294 -15 1800 157 50 55 chr4 152144850 152144898 -32143764 + Charlie1 DNA MER1_type 2713 2760 -1 207 306 111 14 chr4 152145066 152145138 -32143524 + MIR SINE MIR 20 98 -164 1914 128 7 0 chr4 152145140 152145414 -32143248 - AluSx SINE Alu -36 276 1 463 78 69 49 chr4 152145414 152145516 -32143146 + Tigger3(Golem) DNA MER2_type 2329 2432 -597 1533 161 16 8 chr4 152145521 152145775 -32142887 - AluJo SINE Alu -54 258 3 207 0 0 0 chr4 152145781 152145804 -32142858 + (TG)n Simple_repeat Simple_repeat 2 24 0 1837 151 0 17 chr4 152145805 152146097 -32142565 - AluSx SINE Alu -23 289 3 5677 43 4 3 chr4 152146102 152146799 -32141863 - L1PA5 LINE L1 0 6154 5457 1098 145 0 0 chr4 152146799 152146958 -32141704 - AluSg/x SINE Alu -15 297 139 3038 125 22 117 chr4 152146960 152147369 -32141293 + Tigger3(Golem) DNA MER2_type 2420 2742 -287 1456 163 63 22 chr4 152147369 152147484 -32141178 + AluJo SINE Alu 1 110 -202 360 0 0 0 chr4 152147484 152147524 -32141138 + (CA)n Simple_repeat Simple_repeat 2 41 0 1456 163 63 22 chr4 152147524 152147678 -32140984 + AluJo SINE Alu 110 281 -31 3038 125 22 117 chr4 152147678 152147941 -32140721 + Tigger3(Golem) DNA MER2_type 2742 3028 -1 2236 66 42 3 chr4 152147963 152148249 -32140413 - AluY SINE Alu -14 297 1 21 0 0 0 chr4 152149399 152149420 -32139242 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 152149845 152149868 -32138794 + AT_rich Low_complexity Low_complexity 1 23 0 1705 163 37 7 chr4 152149973 152150267 -32138395 + AluSx SINE Alu 1 303 -9 721 241 0 25 chr4 152150422 152150584 -32138078 - FAM SINE Alu -17 158 1 315 271 45 30 chr4 152150643 152150842 -32137820 - L1ME4a LINE L1 -12 6109 5908 472 259 36 22 chr4 152151174 152151313 -32137349 - L1ME4a LINE L1 -468 5653 5513 1022 258 77 3 chr4 152152211 152152521 -32136141 + HAL1 LINE L1 1547 1879 -628 231 237 17 0 chr4 152153159 152153218 -32135444 + L1ME3A LINE L1 6011 6070 -100 850 312 143 36 chr4 152153477 152153524 -32135138 + L2 LINE L2 2654 2695 -618 2107 119 0 17 chr4 152153524 152153819 -32134843 - AluSx SINE Alu -22 290 1 850 312 143 36 chr4 152153819 152154367 -32134295 + L2 LINE L2 2695 3309 -4 185 74 0 0 chr4 152154842 152154869 -32133793 + L2 LINE L2 3284 3310 -3 190 196 118 59 chr4 152155175 152155226 -32133436 + L2 LINE L2 3219 3272 0 22 103 0 0 chr4 152155717 152155795 -32132867 + AT_rich Low_complexity Low_complexity 1 78 0 2359 71 3 3 chr4 152158401 152158698 -32129964 + AluY SINE Alu 1 297 -14 525 209 0 30 chr4 152160214 152160348 -32128314 - FLAM_A SINE Alu 0 142 13 2182 116 3 0 chr4 152160480 152160772 -32127890 + AluSx SINE Alu 1 293 -19 295 243 95 0 chr4 152160781 152160855 -32127807 - MER5A DNA MER1_type -95 94 14 242 370 22 22 chr4 152161576 152161714 -32126948 - MIR SINE MIR -122 140 3 225 248 89 89 chr4 152161904 152162005 -32126657 - MIR3 SINE MIR -21 187 87 2076 166 2 40 chr4 152162066 152162242 -32126420 - L1PB4 LINE L1 -6 6150 5969 2100 122 0 3 chr4 152162242 152162545 -32126117 - AluSc SINE Alu -7 302 1 2076 166 2 40 chr4 152162545 152162791 -32125871 - L1PB4 LINE L1 -187 5969 5744 24 67 0 0 chr4 152164540 152164585 -32124077 + AT_rich Low_complexity Low_complexity 1 45 0 600 301 68 5 chr4 152164922 152165128 -32123534 - MIR SINE MIR -26 236 18 350 356 200 10 chr4 152165582 152165628 -32123034 - MIR SINE MIR -16 246 210 1363 146 86 83 chr4 152165628 152165964 -32122698 + MER1B DNA MER1_type 1 337 0 350 356 200 10 chr4 152165964 152166122 -32122540 - MIR SINE MIR -52 210 3 896 183 30 6 chr4 152166337 152166501 -32122161 + FRAM SINE Alu 1 163 -13 191 368 86 17 chr4 152166508 152166625 -32122037 + L2 LINE L2 2714 2838 -476 2289 89 0 22 chr4 152166842 152167156 -32121506 + AluY SINE Alu 5 311 0 260 286 0 0 chr4 152167331 152167387 -32121275 + MIR SINE MIR 195 250 -12 5294 140 65 27 chr4 152167939 152168894 -32119768 + Tigger1 DNA MER2_type 1 991 -1427 7242 42 15 0 chr4 152168896 152169908 -32118754 - L1PA5 LINE L1 0 6154 5136 31708 55 4 1 chr4 152169909 152173964 -32114698 + L1PA5 LINE L1 1059 5128 -1018 7931 163 33 10 chr4 152173964 152175364 -32113298 + Tigger1 DNA MER2_type 987 2418 0 1706 191 0 20 chr4 152175718 152176017 -32112645 + AluJo SINE Alu 1 293 -19 1953 126 7 14 chr4 152176192 152176478 -32112184 - AluSx SINE Alu -28 284 1 23 0 0 0 chr4 152176664 152176687 -32111975 + AT_rich Low_complexity Low_complexity 1 23 0 457 262 95 52 chr4 152177399 152177609 -32111053 - L2 LINE L2 0 3313 3095 411 214 61 69 chr4 152177644 152177728 -32110934 - L2 LINE L2 -536 2778 2694 2152 117 0 7 chr4 152177728 152178035 -32110627 + AluSx SINE Alu 1 305 -7 411 214 61 69 chr4 152178035 152178081 -32110581 - L2 LINE L2 -620 2694 2649 357 267 203 39 chr4 152178101 152178333 -32110329 - MLT1G LTR MaLR -13 577 273 276 318 45 0 chr4 152178502 152178612 -32110050 - MLT1G LTR MaLR -320 229 115 1980 244 136 20 chr4 152178687 152179420 -32109242 - L2 LINE L2 -685 2629 1812 1782 153 0 4 chr4 152179557 152179825 -32108837 + AluJb SINE Alu 1 267 -45 378 0 0 0 chr4 152179828 152179870 -32108792 + (CA)n Simple_repeat Simple_repeat 2 43 0 24 0 0 0 chr4 152179957 152179981 -32108681 + AT_rich Low_complexity Low_complexity 1 24 0 13935 148 38 27 chr4 152180653 152180891 -32107771 - Tigger2 DNA MER2_type -4 2714 2480 2229 113 0 6 chr4 152180891 152181202 -32107460 + AluSq SINE Alu 1 309 -4 13935 148 38 27 chr4 152181202 152182799 -32105863 - Tigger2 DNA MER2_type -238 2480 902 186 71 0 0 chr4 152182799 152182827 -32105835 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 13935 148 38 27 chr4 152182827 152183153 -32105509 - Tigger2 DNA MER2_type -1816 902 581 1825 121 0 8 chr4 152183153 152183410 -32105252 + AluSq SINE Alu 29 283 -30 13935 148 38 27 chr4 152183410 152183683 -32104979 - Tigger2 DNA MER2_type -2137 581 252 1621 174 40 0 chr4 152183732 152184008 -32104654 + AluJo SINE Alu 3 289 -23 7209 156 40 49 chr4 152184025 152185827 -32102835 + L1MB8 LINE L1 3790 5613 -691 984 136 110 0 chr4 152185860 152186014 -32102648 - AluSx SINE Alu -141 171 1 1470 167 63 11 chr4 152186018 152186305 -32102357 - AluJo SINE Alu -6 306 5 361 223 149 47 chr4 152187333 152187481 -32101181 + MIR SINE MIR 81 243 -19 471 192 75 0 chr4 152188374 152188494 -32100168 + L1MB8 LINE L1 6050 6178 0 205 287 175 35 chr4 152188524 152188667 -32099995 + MIR SINE MIR 29 191 -71 463 268 72 10 chr4 152189133 152189327 -32099335 - L1MC4 LINE L1 -1 8041 7836 1902 194 71 60 chr4 152189365 152189928 -32098734 - L1ME2 LINE L1 0 6164 5596 351 154 0 0 chr4 152190200 152190265 -32098397 + (CA)n Simple_repeat Simple_repeat 2 66 0 21 57 0 0 chr4 152192848 152192883 -32095779 + AT_rich Low_complexity Low_complexity 1 35 0 623 176 8 8 chr4 152193224 152193343 -32095319 - L1MC2 LINE L1 0 6344 6226 979 177 11 11 chr4 152194617 152194798 -32093864 + MER47A DNA MER2_type 20 200 -166 1154 124 6 0 chr4 152194811 152194980 -32093682 - Tigger5 DNA MER2_type -1 2322 2153 1454 182 4 11 chr4 152195605 152195869 -32092793 - AluJo SINE Alu -1 311 50 1688 201 0 13 chr4 152196989 152197293 -32091369 + AluJo SINE Alu 1 300 -12 1953 156 0 0 chr4 152197892 152198194 -32090468 + AluJo SINE Alu 1 302 -10 756 0 0 0 chr4 152198859 152198943 -32089719 + (TATCG)n Simple_repeat Simple_repeat 3 86 0 1320 219 29 4 chr4 152198943 152199221 -32089441 - AluJo SINE Alu -27 285 1 341 113 19 0 chr4 152199232 152199285 -32089377 - AluSp/q SINE Alu -9 294 241 985 197 126 51 chr4 152199286 152199540 -32089122 - L1MC4 LINE L1 -1063 6979 6707 183 100 0 0 chr4 152199545 152199575 -32089087 + (TG)n Simple_repeat Simple_repeat 2 31 0 259 85 43 0 chr4 152200539 152200586 -32088076 + (CATTT)n Simple_repeat Simple_repeat 4 52 0 2070 106 3 14 chr4 152200844 152201164 -32087498 + AluSx SINE Alu 1 317 0 295 283 0 0 chr4 152201696 152201788 -32086874 + (TA)n Simple_repeat Simple_repeat 1 92 0 35 0 0 0 chr4 152202272 152202307 -32086355 + AT_rich Low_complexity Low_complexity 1 35 0 212 253 89 25 chr4 152202651 152202730 -32085932 + L3 LINE CR1 594 677 -900 345 316 141 12 chr4 152202823 152203079 -32085583 + L3 LINE CR1 913 1201 -376 1280 47 2 30 chr4 152203079 152203486 -32085176 + (TTTCC)n Simple_repeat Simple_repeat 1 395 0 279 65 0 65 chr4 152204659 152204705 -32083957 - MADE1 DNA Mariner -37 43 1 189 0 0 0 chr4 152204915 152204936 -32083726 + (T)n Simple_repeat Simple_repeat 1 21 0 334 288 115 21 chr4 152205142 152205333 -32083329 - L1ME3A LINE L1 -200 5970 5762 398 279 37 84 chr4 152205337 152205734 -32082928 - L1ME3A LINE L1 -505 5657 5200 1988 149 0 7 chr4 152206033 152206341 -32082321 + AluSq SINE Alu 1 306 -7 1209 251 48 5 chr4 152206342 152206713 -32081949 - L1ME3A LINE L1 -3459 2687 2301 1451 110 75 12 chr4 152206725 152206979 -32081683 - L1MA1 LINE L1 -8 6294 6025 623 244 142 27 chr4 152207369 152207594 -32081068 + MIR SINE MIR 5 255 -7 427 260 95 30 chr4 152207662 152207831 -32080831 - MIR SINE MIR -17 245 66 2204 125 0 0 chr4 152207989 152208300 -32080362 - AluSx SINE Alu -1 311 1 287 65 0 65 chr4 152209566 152209612 -32079050 - MADE1 DNA Mariner -37 43 1 189 0 0 0 chr4 152209822 152209843 -32078819 + (T)n Simple_repeat Simple_repeat 1 21 0 322 293 49 4 chr4 152210388 152210555 -32078107 - L1M2 LINE L1 -589 5573 5409 234 304 29 0 chr4 152210542 152210644 -32078018 - L1M4 LINE L1 -842 5304 5200 * 2166 113 3 0 chr4 152210943 152211244 -32077418 + AluSx SINE Alu 1 302 -10 559 286 25 0 chr4 152211514 152211675 -32076987 + MER58B DNA MER1_type 173 337 -4 1905 137 38 3 chr4 152212024 152212317 -32076345 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr4 152212714 152212735 -32075927 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 152212915 152212939 -32075723 + AT_rich Low_complexity Low_complexity 1 24 0 877 252 57 0 chr4 152213020 152213230 -32075432 - MER58A DNA MER1_type -2 222 1 22 56 0 0 chr4 152213509 152213545 -32075117 + AT_rich Low_complexity Low_complexity 1 36 0 21 82 0 0 chr4 152213866 152213915 -32074747 + AT_rich Low_complexity Low_complexity 1 49 0 2233 109 3 0 chr4 152214363 152214667 -32073995 + AluSx SINE Alu 1 305 -7 12799 198 62 50 chr4 152215163 152218028 -32070634 + L1PA16 LINE L1 2 2831 -4018 2331 76 0 16 chr4 152218028 152218332 -32070330 + AluY SINE Alu 1 299 -12 12799 198 62 50 chr4 152218332 152219107 -32069555 + L1PA16 LINE L1 2831 3595 -3254 1921 140 7 20 chr4 152219107 152219407 -32069255 + AluSx SINE Alu 1 296 -16 12799 198 62 50 chr4 152219407 152220822 -32067840 + L1PA16 LINE L1 3595 5094 -1755 5201 129 39 7 chr4 152220823 152221296 -32067366 + L1PA16 LINE L1 5218 5674 -1195 1797 177 3 0 chr4 152221296 152221595 -32067067 + AluJb SINE Alu 1 300 -12 5201 129 39 7 chr4 152221595 152222737 -32065925 + L1PA16 LINE L1 5674 6860 -9 22 56 0 0 chr4 152222737 152222773 -32065889 + AT_rich Low_complexity Low_complexity 1 36 0 2254 95 3 0 chr4 152222862 152223157 -32065505 + AluSp SINE Alu 1 296 -17 2151 105 3 0 chr4 152224236 152224531 -32064131 + AluSx SINE Alu 1 296 -16 1042 283 77 43 chr4 152225802 152226401 -32062261 + L1M4c LINE L1 783 1427 -4957 1911 156 14 0 chr4 152226401 152226689 -32061973 + AluSx SINE Alu 1 292 -20 1042 283 77 43 chr4 152226689 152227026 -32061636 + L1M4c LINE L1 1427 1751 -4633 292 315 77 58 chr4 152227160 152227525 -32061137 + L1ME LINE L1 77 448 -5622 326 23 0 23 chr4 152227853 152227897 -32060765 + (TTTCC)n Simple_repeat Simple_repeat 1 43 0 1231 66 2 36 chr4 152227924 152228265 -32060397 + (TTTCC)n Simple_repeat Simple_repeat 1 507 0 410 235 38 38 chr4 152228470 152228602 -32060060 - FLAM_C SINE Alu -1 132 1 180 402 10 0 chr4 152228607 152228704 -32059958 + L3 LINE CR1 1445 1542 -35 273 342 0 13 chr4 152229828 152229904 -32058758 + MIR SINE MIR 17 91 -117 250 256 97 72 chr4 152229974 152230295 -32058367 - L1MC5 LINE L1 -50 7911 7583 306 73 0 0 chr4 152230308 152230349 -32058313 + (TG)n Simple_repeat Simple_repeat 2 42 0 1897 151 6 6 chr4 152230379 152230691 -32057971 - AluSx SINE Alu 0 312 1 1065 177 147 62 chr4 152230821 152231195 -32057467 + Looper DNA T2_type 51 463 -1095 1592 175 37 27 chr4 152231195 152231375 -32057287 - AluJb SINE Alu -12 300 114 444 19 0 0 chr4 152231375 152231428 -32057234 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 1592 175 37 27 chr4 152231428 152231544 -32057118 - AluJb SINE Alu -198 114 1 1065 177 147 62 chr4 152231544 152231570 -32057092 + Looper DNA T2_type 463 485 -1073 484 128 12 35 chr4 152231578 152231664 -32056998 + MER106A DNA MER1_type 30 113 -123 2847 193 46 32 chr4 152231686 152232407 -32056255 + Looper DNA T2_type 827 1557 -1 203 59 0 29 chr4 152233376 152233388 -32055274 + (TATATG)n Simple_repeat Simple_repeat 4 15 -21 2179 108 0 0 chr4 152233388 152233676 -32054986 + AluSx SINE Alu 1 288 -24 203 59 0 29 chr4 152233676 152233697 -32054965 + (TATATG)n Simple_repeat Simple_repeat 15 36 0 22 35 0 0 chr4 152235916 152235945 -32052717 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4 152237330 152237353 -32051309 + AT_rich Low_complexity Low_complexity 1 23 0 36 0 0 0 chr4 152238852 152238888 -32049774 + AT_rich Low_complexity Low_complexity 1 36 0 345 364 126 44 chr4 152239125 152239621 -32049041 + L2 LINE L2 2753 3272 0 341 278 61 9 chr4 152239741 152239856 -32048806 + L2 LINE L2 3147 3267 -46 1167 181 10 5 chr4 152240123 152240327 -32048335 - AluJb SINE Alu -23 289 85 2372 80 3 0 chr4 152240332 152240634 -32048028 - AluSq SINE Alu -10 303 1 1446 178 12 4 chr4 152240671 152240930 -32047732 + AluJo SINE Alu 46 306 -6 382 158 0 14 chr4 152240933 152241011 -32047651 - L1ME2 LINE L1 -9 6155 6089 387 237 17 59 chr4 152241031 152241149 -32047513 - L1ME2 LINE L1 -137 6027 5915 2521 62 0 3 chr4 152241378 152241686 -32046976 - AluY SINE Alu -4 307 1 488 197 41 33 chr4 152242184 152242306 -32046356 + FLAM_A SINE Alu 1 123 -10 317 87 0 0 chr4 152243538 152243584 -32045078 + L1PA6 LINE L1 6105 6150 -4 2147 115 3 0 chr4 152244352 152244640 -32044022 - AluSx SINE Alu -23 289 1 1840 114 4 4 chr4 152244651 152244906 -32043756 - AluSx SINE Alu -9 303 49 309 279 12 0 chr4 152244938 152245024 -32043638 + MIR SINE MIR 66 152 -110 1658 158 3 81 chr4 152245036 152245358 -32043304 + AluSx SINE Alu 2 298 -14 1457 87 15 0 chr4 152245369 152245575 -32043087 + L1MA2 LINE L1 5532 5740 -564 2049 81 87 6 chr4 152245575 152245905 -32042757 + L1MA2 LINE L1 5945 6304 0 22 35 0 0 chr4 152245997 152246026 -32042636 + AT_rich Low_complexity Low_complexity 1 29 0 1692 144 46 3 chr4 152246197 152246481 -32042181 - AluSx SINE Alu -16 296 1 1943 164 71 105 chr4 152246539 152246887 -32041775 - LTR8A LTR ERV1 0 727 402 2065 113 38 3 chr4 152246887 152247180 -32041482 + AluSq SINE Alu 1 303 -10 1943 164 71 105 chr4 152247180 152247363 -32041299 - LTR8A LTR ERV1 -325 402 214 304 141 47 0 chr4 152247782 152247846 -32040816 + LTR8A LTR ERV1 1 67 -660 357 254 41 41 chr4 152248093 152248215 -32040447 - MER5C DNA MER1_type -200 124 3 1537 222 3 10 chr4 152248982 152249293 -32039369 + AluJo SINE Alu 1 309 -3 419 224 147 51 chr4 152249936 152250092 -32038570 - MIR SINE MIR 0 262 92 1020 89 0 0 chr4 152250680 152250804 -32037858 + AluSq/x SINE Alu 1 124 -188 1645 169 33 29 chr4 152250904 152251269 -32037393 + LTR8 LTR ERV1 365 691 0 761 155 69 11 chr4 152251331 152251361 -32037301 + L1MA9 LINE L1 6122 6149 -163 4342 108 27 3 chr4 152251361 152251990 -32036672 - LTR9B LTR ERV1 0 644 1 761 155 69 11 chr4 152251990 152252133 -32036529 + L1MA9 LINE L1 6149 6305 -7 1682 227 68 37 chr4 152253421 152253910 -32034752 + MLT1D LTR MaLR 2 505 0 1886 149 10 13 chr4 152254006 152254307 -32034355 + AluJb SINE Alu 3 302 -10 1717 142 31 0 chr4 152254627 152254887 -32033775 + Charlie3 DNA MER1_type 1 268 -2442 345 361 138 31 chr4 152255711 152256232 -32032430 + L2 LINE L2 2256 2832 -482 509 315 69 23 chr4 152256261 152256566 -32032096 + L2 LINE L2 2995 3313 0 347 319 110 16 chr4 152256932 152257114 -32031548 + MIR SINE MIR 20 218 -44 295 331 21 7 chr4 152258549 152258694 -32029968 + L2 LINE L2 1876 2022 -1292 23 0 0 0 chr4 152258922 152258945 -32029717 + AT_rich Low_complexity Low_complexity 1 23 0 256 295 57 0 chr4 152259041 152259163 -32029499 - L1MC4a LINE L1 -1826 5982 5854 350 233 90 122 chr4 152259202 152259447 -32029215 - L1MC4a LINE L1 -2312 5496 5260 35 41 0 0 chr4 152260562 152260611 -32028051 + AT_rich Low_complexity Low_complexity 1 49 0 2294 96 13 0 chr4 152261950 152262252 -32026410 - AluSc SINE Alu -3 306 1 26 0 0 0 chr4 152262491 152262517 -32026145 + AT_rich Low_complexity Low_complexity 1 26 0 26 50 0 0 chr4 152262548 152262588 -32026074 + AT_rich Low_complexity Low_complexity 1 40 0 738 221 7 0 chr4 152262696 152262836 -32025826 + FRAM SINE Alu 5 145 -31 369 0 0 0 chr4 152262842 152262883 -32025779 + (CAA)n Simple_repeat Simple_repeat 2 42 0 2023 136 13 0 chr4 152263117 152263418 -32025244 - AluSx SINE Alu -7 305 1 24 0 0 0 chr4 152263427 152263451 -32025211 + AT_rich Low_complexity Low_complexity 1 24 0 1058 167 0 0 chr4 152263611 152263779 -32024883 - AluSg/x SINE Alu -8 304 137 282 271 170 13 chr4 152263784 152264013 -32024649 - HAL1 LINE L1 -189 2318 2054 229 192 0 41 chr4 152264013 152264086 -32024576 + CT-rich Low_complexity Low_complexity 4 73 0 474 324 20 37 chr4 152264140 152264439 -32024223 - HAL1 LINE L1 -441 2066 1773 459 0 0 0 chr4 152264446 152264497 -32024165 + (TG)n Simple_repeat Simple_repeat 2 52 0 181 295 16 49 chr4 152264535 152264596 -32024066 - L2 LINE L2 -16 3297 3239 17477 181 49 24 chr4 152264625 152265217 -32023445 + ERVL-B1 LTR ERVL 1282 1858 -3853 3547 138 77 39 chr4 152265217 152265906 -32022756 - LTR62 LTR ERVK -4 715 1 17477 181 49 24 chr4 152265906 152266985 -32021677 + ERVL-B1 LTR ERVL 1858 2909 -2802 263 167 0 0 chr4 152266985 152267027 -32021635 - 5S rRNA rRNA -79 42 1 17477 181 49 24 chr4 152267027 152269322 -32019340 + ERVL-B1 LTR ERVL 2909 5427 -284 294 73 0 0 chr4 152269322 152269363 -32019299 + (TG)n Simple_repeat Simple_repeat 2 42 0 17477 181 49 24 chr4 152269363 152269493 -32019169 + ERVL-B1 LTR ERVL 5427 5552 -159 1503 183 26 13 chr4 152269578 152270032 -32018630 - MLT2B1 LTR ERVL -8 512 1 787 142 0 8 chr4 152270044 152270171 -32018491 + ERVL-B1 LTR ERVL 5632 5757 -7 790 231 45 37 chr4 152270171 152270414 -32018248 + MLT2B1 LTR ERVL 1 245 -169 232 296 25 25 chr4 152270505 152270586 -32018076 + MLT2B1 LTR ERVL 336 416 -48 187 68 91 0 chr4 152270587 152270631 -32018031 + (TCTCTG)n Simple_repeat Simple_repeat 5 52 0 256 122 143 0 chr4 152270631 152270680 -32017982 + MLT2C2 LTR ERVL 408 463 -1 2275 101 3 25 chr4 152270705 152271022 -32017640 + AluSx SINE Alu 1 310 -2 362 252 8 34 chr4 152271137 152271256 -32017406 - HAL1 LINE L1 -1569 938 823 239 277 90 75 chr4 152271529 152271807 -32016855 - HAL1 LINE L1 -2115 392 111 2287 99 0 7 chr4 152271866 152272168 -32016494 - AluSg SINE Alu -10 300 1 2200 75 7 0 chr4 152272171 152272450 -32016212 - AluY SINE Alu -8 303 23 5672 152 46 8 chr4 152274358 152275448 -32013214 - L1MC1 LINE L1 0 6333 5202 1092 192 84 4 chr4 152275444 152275705 -32012957 - L1MC1 LINE L1 -1793 4353 4072 * 208 191 0 43 chr4 152276977 152277024 -32011638 + GA-rich Low_complexity Low_complexity 1 45 0 192 77 0 0 chr4 152277304 152277330 -32011332 + (CA)n Simple_repeat Simple_repeat 1 26 0 22 70 0 0 chr4 152278168 152278211 -32010451 + AT_rich Low_complexity Low_complexity 1 43 0 199 374 0 24 chr4 152279288 152279371 -32009291 - L2 LINE L2 -329 2984 2904 216 0 0 0 chr4 152279371 152279395 -32009267 + (TG)n Simple_repeat Simple_repeat 2 25 0 290 308 50 45 chr4 152279440 152279638 -32009024 - L2 LINE L2 -557 2757 2559 217 286 245 10 chr4 152280045 152280143 -32008519 + MIR SINE MIR 16 136 -126 * 1410 272 60 47 chr4 152280140 152280738 -32007924 - L2 LINE L2 -18 3295 2706 1595 177 7 11 chr4 152280738 152281015 -32007647 + AluJb SINE Alu 5 280 -32 1410 272 60 47 chr4 152281015 152281075 -32007587 - L2 LINE L2 -607 2706 2648 2024 146 0 3 chr4 152281075 152281383 -32007279 + AluJo SINE Alu 1 307 -5 1410 272 60 47 chr4 152281383 152281559 -32007103 - L2 LINE L2 -665 2648 2465 1074 280 84 3 chr4 152281567 152281899 -32006763 + LTR40a LTR ERVL 33 391 -128 1684 151 33 30 chr4 152283881 152284185 -32004477 - AluJb SINE Alu -7 305 1 22 0 0 0 chr4 152284413 152284435 -32004227 + AT_rich Low_complexity Low_complexity 1 22 0 410 250 170 0 chr4 152285189 152285301 -32003361 - FLAM_C SINE Alu -1 132 2 318 89 0 47 chr4 152285409 152285485 -32003177 - Alu SINE Alu 0 302 252 22 0 0 0 chr4 152285735 152285757 -32002905 + AT_rich Low_complexity Low_complexity 1 22 0 1758 156 10 7 chr4 152285869 152286158 -32002504 - AluJb SINE Alu -16 296 7 544 298 64 32 chr4 152286573 152286855 -32001807 - L2 LINE L2 0 3313 3023 35 0 0 0 chr4 152287449 152287484 -32001178 + AT_rich Low_complexity Low_complexity 1 35 0 957 196 95 0 chr4 152288735 152288924 -31999738 + AluJo SINE Alu 3 209 -103 251 60 0 80 chr4 152288924 152288974 -31999688 + AluJo SINE Alu 89 134 -168 652 336 100 20 chr4 152289130 152289674 -31998988 - L2 LINE L2 -6 3307 2708 1430 171 40 43 chr4 152289679 152289983 -31998679 - AluJo SINE Alu 0 312 10 1178 179 6 89 chr4 152289984 152290039 -31998623 - L1 LINE L1 -939 5207 5149 739 173 0 43 chr4 152290039 152290178 -31998484 - FLAM_C SINE Alu 0 133 1 1178 179 6 89 chr4 152290178 152290381 -31998281 - L1 LINE L1 -997 5149 4931 1479 214 8 45 chr4 152290381 152290760 -31997902 - MLT1A1 LTR MaLR 0 365 1 1178 179 6 89 chr4 152290760 152290777 -31997885 - L1 LINE L1 -1215 4931 4958 2338 96 0 0 chr4 152290777 152291079 -31997583 - AluSg SINE Alu -8 302 1 1178 179 6 89 chr4 152291079 152291125 -31997537 - L1 LINE L1 -1187 4959 4911 1329 305 60 43 chr4 152291170 152291825 -31996837 - L2 LINE L2 -656 2658 1993 183 299 129 67 chr4 152292398 152292622 -31996040 - L2 LINE L2 -514 2800 2563 2232 109 0 0 chr4 152292656 152292958 -31995704 + AluY SINE Alu 1 302 -9 296 230 0 35 chr4 152293277 152293364 -31995298 + (TATATG)n Simple_repeat Simple_repeat 6 89 0 2277 104 0 0 chr4 152293652 152293961 -31994701 + AluSg SINE Alu 1 309 -1 1420 233 95 88 chr4 152294171 152294737 -31993925 - MLT1E LTR MaLR -23 570 1 245 329 14 56 chr4 152295012 152295155 -31993507 - L2 LINE L2 -772 2542 2406 861 228 28 28 chr4 152295695 152295910 -31992752 - MER58A DNA MER1_type -9 215 1 2012 141 0 7 chr4 152296196 152296494 -31992168 + AluSx SINE Alu 1 296 -16 1365 189 39 39 chr4 152296538 152296850 -31991812 - AluJo SINE Alu 0 312 1 23 0 0 0 chr4 152296992 152297015 -31991647 + AT_rich Low_complexity Low_complexity 1 23 0 1572 181 18 25 chr4 152297032 152297349 -31991313 + AluJb SINE Alu 15 329 0 469 283 57 50 chr4 152297622 152297905 -31990757 - L1ME3A LINE L1 -197 6042 5758 931 251 57 31 chr4 152297921 152298550 -31990112 - L1ME3A LINE L1 -630 5601 4964 626 268 55 45 chr4 152298588 152299059 -31989603 - L1ME3A LINE L1 -1435 4780 4305 502 266 81 32 chr4 152299056 152299402 -31989260 - L1ME3A LINE L1 -2932 3283 2921 * 1946 266 37 19 chr4 152299409 152299977 -31988685 - MLT1E LTR MaLR -2 591 14 533 266 31 10 chr4 152299998 152300190 -31988472 - L1ME3A LINE L1 -3316 2899 2704 735 258 206 31 chr4 152300512 152301051 -31987611 - L1ME3A LINE L1 -4131 2265 1633 354 163 47 35 chr4 152301057 152301143 -31987519 - MER34 LTR ERV1 -7 535 449 2265 108 3 0 chr4 152301175 152301482 -31987180 + AluSx SINE Alu 1 308 -4 233 297 86 39 chr4 152301692 152301820 -31986842 - LTR48B LTR ERV1 -402 242 141 322 191 0 21 chr4 152301897 152301991 -31986671 + CT-rich Low_complexity Low_complexity 1 92 0 1372 144 0 0 chr4 152302010 152302211 -31986451 - AluSg/x SINE Alu -34 278 78 1490 187 17 28 chr4 152302244 152302533 -31986129 - AluJo SINE Alu -26 286 1 263 323 40 33 chr4 152302702 152302978 -31985684 - L1ME3A LINE L1 -4866 1339 1062 26 0 0 0 chr4 152302991 152303017 -31985645 + AT_rich Low_complexity Low_complexity 1 26 0 551 348 90 37 chr4 152305338 152306142 -31982520 + L1M4 LINE L1 3672 4504 -1642 207 0 0 0 chr4 152306175 152306198 -31982464 + (TG)n Simple_repeat Simple_repeat 1 23 0 201 39 0 0 chr4 152306197 152306223 -31982439 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 1052 249 67 0 chr4 152306230 152306543 -31982119 - L1MC4 LINE L1 -1 8041 7708 269 256 16 41 chr4 152307448 152307569 -31981093 + L1P3 LINE L1 5609 5726 -428 307 227 93 0 chr4 152307593 152307690 -31980972 - HAL1b LINE L1 -323 1025 920 5706 108 7 52 chr4 152307778 152308736 -31979926 - L1MA2 LINE L1 0 7723 6809 1956 155 0 0 chr4 152308736 152309039 -31979623 - AluSx SINE Alu -9 303 1 1999 146 13 0 chr4 152309066 152309374 -31979288 - AluSx SINE Alu 0 312 1 17923 169 41 42 chr4 152309374 152310461 -31978201 - L1MA2 LINE L1 -749 6816 5729 1454 203 29 0 chr4 152310461 152310737 -31977925 - AluJb SINE Alu -28 284 1 17923 169 41 42 chr4 152310737 152312401 -31976261 - L1MA2 LINE L1 -1836 5729 4065 2336 101 0 3 chr4 152312401 152312707 -31975955 + AluSx SINE Alu 1 305 -7 17923 169 41 42 chr4 152312707 152312928 -31975734 - L1MA2 LINE L1 -3500 4065 3845 1830 113 63 74 chr4 152312928 152313307 -31975355 + THE1C LTR MaLR 1 375 0 17923 169 41 42 chr4 152313307 152314863 -31973799 - L1MA2 LINE L1 -3720 3845 2289 229 146 0 0 chr4 152314863 152314911 -31973751 + LTR66 LTR ERVL 394 441 -169 572 168 0 0 chr4 152314914 152315009 -31973653 - Alu SINE Alu -10 301 207 17923 169 41 42 chr4 152315009 152317146 -31971516 - L1MA2 LINE L1 -5278 2287 9 1015 256 42 44 chr4 152317166 152317549 -31971113 - HAL1b LINE L1 -451 897 516 1995 130 0 7 chr4 152317858 152318150 -31970512 + AluSx SINE Alu 1 290 -22 928 252 83 29 chr4 152318792 152319213 -31969449 - HAL1b LINE L1 -822 526 83 34 24 0 0 chr4 152320248 152320289 -31968373 + AT_rich Low_complexity Low_complexity 1 41 0 344 318 185 15 chr4 152320677 152320872 -31967790 - MIR SINE MIR 0 262 35 21 0 0 0 chr4 152322034 152322055 -31966607 + AT_rich Low_complexity Low_complexity 1 21 0 1453 187 67 11 chr4 152322071 152322381 -31966281 - AluJb SINE Alu 0 326 2 631 320 48 17 chr4 152322501 152322732 -31965930 - MIR SINE MIR -19 243 6 28 79 0 0 chr4 152323157 152323220 -31965442 + AT_rich Low_complexity Low_complexity 1 63 0 1613 112 0 0 chr4 152323384 152323608 -31965054 - AluSg1 SINE Alu -85 224 1 21 0 0 0 chr4 152324325 152324346 -31964316 + AT_rich Low_complexity Low_complexity 1 21 0 674 309 54 10 chr4 152324407 152324701 -31963961 - MER110 LTR ERV1 0 491 185 298 185 11 110 chr4 152324787 152324893 -31963769 - MER110A LTR ERV1 -308 160 80 1202 96 66 0 chr4 152325043 152325240 -31963422 - L1MA8 LINE L1 -53 6238 6029 1041 174 19 5 chr4 152525921 152526128 -31762534 - HERVH LTR ERV1 -1904 5809 5600 4093 147 1 1 chr4 152526129 152526791 -31761871 - HERVH LTR ERV1 -2564 5149 4488 2719 77 10 0 chr4 152526793 152527196 -31761466 - HERVH LTR ERV1 -3720 3993 3587 25 0 0 0 chr4 152527501 152527526 -31761136 + AT_rich Low_complexity Low_complexity 1 25 0 277 333 94 0 chr4 152527683 152527821 -31760841 + L2 LINE L2 3162 3312 -1 363 280 188 21 chr4 152528001 152528187 -31760475 + MIR SINE MIR 20 236 -26 930 166 0 0 chr4 152528306 152528445 -31760217 - AluJb SINE Alu -12 300 162 204 326 0 0 chr4 152528969 152529015 -31759647 + L2 LINE L2 3249 3294 -19 1738 182 3 10 chr4 152529051 152529347 -31759315 - AluJo SINE Alu -18 294 1 1873 154 32 3 chr4 152529989 152530332 -31758330 - L1MA4A LINE L1 -11 6292 5940 924 105 0 7 chr4 152530332 152530475 -31758187 + L1MA4A LINE L1 5801 5942 -361 294 281 138 63 chr4 152532898 152533285 -31755377 + L2 LINE L2 2280 3237 -76 27 49 0 0 chr4 152534414 152534455 -31754207 + AT_rich Low_complexity Low_complexity 1 41 0 1807 178 3 0 chr4 152534730 152535023 -31753639 + AluJb SINE Alu 1 294 -18 378 340 112 15 chr4 152535070 152535276 -31753386 + L3 LINE CR1 1262 1487 -90 187 322 91 41 chr4 152535277 152535398 -31753264 - L2 LINE L2 -5 3308 3182 481 243 33 20 chr4 152535560 152535762 -31752900 - L2 LINE L2 -281 2991 2794 241 258 76 15 chr4 152535758 152535824 -31752838 - MER5B DNA MER1_type -105 73 4 * 21 57 0 0 chr4 152535876 152535911 -31752751 + AT_rich Low_complexity Low_complexity 1 35 0 1784 131 196 6 chr4 152535954 152536312 -31752350 - MSTA LTR MaLR -2 426 1 219 275 63 42 chr4 152536365 152536507 -31752155 - L2 LINE L2 -578 2736 2592 303 303 0 13 chr4 152536513 152536589 -31752073 + MIR3 SINE MIR 109 183 -25 306 254 135 16 chr4 152536699 152536825 -31751837 + L2 LINE L2 1637 1777 -1537 573 211 47 41 chr4 152537298 152537469 -31751193 - L2 LINE L2 -23 3290 3119 834 304 175 12 chr4 152537703 152538300 -31750362 - L2 LINE L2 -294 3019 2325 686 195 0 0 chr4 152538300 152538428 -31750234 + MSTD LTR MaLR 3 130 -266 1228 165 50 4 chr4 152538456 152538698 -31749964 - MSTB1 LTR MaLR 0 432 180 6361 33 0 0 chr4 152538698 152539729 -31748933 + L1P2 LINE L1 4582 5612 -543 381 197 14 0 chr4 152539729 152539800 -31748862 - MSTB1 LTR MaLR -247 179 108 502 284 118 7 chr4 152539800 152540106 -31748556 + L1M4 LINE L1 2403 2742 -3404 261 244 0 39 chr4 152540125 152540203 -31748459 - L1MCa LINE L1 -6323 103 29 237 327 0 0 chr4 152542309 152542364 -31746298 + MER5A DNA MER1_type 58 112 -77 636 278 47 51 chr4 152542682 152542916 -31745746 - MIR SINE MIR -24 238 6 352 312 33 43 chr4 152543137 152543413 -31745249 + L1ME1 LINE L1 57 329 -6211 1682 186 28 28 chr4 152543679 152544034 -31744628 + MLT2B1 LTR ERVL 1 355 -165 2952 250 74 17 chr4 152544043 152545568 -31743094 + L1ME1 LINE L1 4929 6560 0 24 0 0 0 chr4 152547073 152547097 -31741565 + AT_rich Low_complexity Low_complexity 1 24 0 455 158 20 168 chr4 152547549 152547745 -31740917 + LTR28 LTR ERV1 1 167 -853 353 160 13 0 chr4 152547776 152547851 -31740811 + LTR1 LTR ERV1 115 190 -595 * 742 189 15 172 chr4 152547821 152548217 -31740445 + LTR27 LTR ERV1 300 633 -3 430 237 102 73 chr4 152548223 152548468 -31740194 + LTR27-int LTR ERV1 1 252 -6839 * 6551 161 49 54 chr4 152548462 152552818 -31735844 + LTR27-int LTR ERV1 406 4895 -393 709 237 6 12 chr4 152552907 152553080 -31735582 - LTR28 LTR ERV1 -848 172 1 276 315 102 0 chr4 152553904 152554012 -31734650 + MIR3 SINE MIR 84 202 -6 21 0 0 0 chr4 152554284 152554305 -31734357 + AT_rich Low_complexity Low_complexity 1 21 0 741 286 83 8 chr4 152554993 152555234 -31733428 - MIR SINE MIR -2 260 2 2149 120 0 0 chr4 152555566 152555865 -31732797 - AluSg SINE Alu -11 299 1 26 0 0 0 chr4 152556144 152556170 -31732492 + AT_rich Low_complexity Low_complexity 1 26 0 500 244 0 8 chr4 152556193 152556324 -31732338 - LTR16A1 LTR ERVL -27 430 301 25 0 0 0 chr4 152556485 152556510 -31732152 + AT_rich Low_complexity Low_complexity 1 25 0 2834 132 5 2 chr4 152557585 152558016 -31730646 + MER57B LTR ERV1 3 434 0 337 266 38 57 chr4 152558063 152558221 -31730441 - L1ME4a LINE L1 -3 6118 5964 4599 148 78 8 chr4 152558361 152559205 -31729457 - MER4D LTR ERV1 0 903 1 21 71 0 0 chr4 152559937 152559979 -31728683 + AT_rich Low_complexity Low_complexity 1 42 0 1881 100 23 15 chr4 152561335 152561594 -31727068 + AluSx SINE Alu 35 295 -17 297 267 199 7 chr4 152562074 152562220 -31726442 - MIR SINE MIR -34 228 55 191 86 0 29 chr4 152564937 152564972 -31723690 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 1055 171 28 32 chr4 152565072 152565323 -31723339 + L1MA9 LINE L1 1 250 -6780 2505 245 52 27 chr4 152565402 152567068 -31721594 + L1MA9 LINE L1 1300 2726 -4380 2155 79 0 4 chr4 152567068 152567346 -31721316 + AluY SINE Alu 25 301 -10 2505 245 52 27 chr4 152567346 152567769 -31720893 + L1MA9 LINE L1 2726 3137 -3969 705 225 149 12 chr4 152567780 152568029 -31720633 + L1MA9 LINE L1 3718 4000 -3106 775 230 20 0 chr4 152568030 152568178 -31720484 + FAM SINE Alu 2 152 -33 256 47 23 23 chr4 152568190 152568233 -31720429 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 9992 181 32 31 chr4 152568233 152571504 -31717158 + L1MA9 LINE L1 3997 7267 -5 1283 135 116 0 chr4 152571565 152571772 -31716890 + AluSx SINE Alu 62 292 -20 2877 110 12 0 chr4 152571847 152572274 -31716388 - LTR3 LTR ERVK 0 432 1 758 296 57 24 chr4 152572410 152572745 -31715917 - LTR16A LTR ERVL -53 397 52 254 296 256 12 chr4 152574229 152574401 -31714261 + MIR SINE MIR 46 259 -3 1493 236 39 15 chr4 152575889 152576279 -31712383 + L1PA12 LINE L1 1 399 -7182 222 62 0 0 chr4 152576279 152576311 -31712351 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2152 95 0 3 chr4 152576314 152576597 -31712065 - AluY SINE Alu -29 282 1 388 286 94 31 chr4 152577924 152578116 -31710546 + MIR SINE MIR 22 225 -37 317 260 104 11 chr4 152578140 152578262 -31710400 - MIR SINE MIR -60 148 11 605 259 6 19 chr4 152578368 152578526 -31710136 + MER5B DNA MER1_type 1 156 -22 226 158 74 95 chr4 152578703 152578798 -31709864 - LTR50 LTR ERVL -677 118 26 286 246 29 0 chr4 152579131 152579200 -31709462 + L2 LINE L2 3201 3271 -1 273 29 0 0 chr4 152579235 152579269 -31709393 + (TG)n Simple_repeat Simple_repeat 2 35 0 1772 52 5 0 chr4 152579742 152580013 -31708649 + AluY SINE Alu 74 345 0 495 263 80 6 chr4 152580252 152580427 -31708235 - LTR33 LTR ERVL -3 518 331 416 319 63 0 chr4 152580499 152580690 -31707972 - LTR33 LTR ERVL -304 217 15 235 293 13 13 chr4 152580746 152580821 -31707841 - MIR SINE MIR -168 94 20 464 229 63 63 chr4 152581284 152581489 -31707173 + MIR SINE MIR 1 205 -57 1197 210 33 109 chr4 152582275 152582670 -31705992 + MLT1A1 LTR MaLR 1 365 0 26 0 0 0 chr4 152582703 152582729 -31705933 + AT_rich Low_complexity Low_complexity 1 26 0 430 329 88 27 chr4 152582730 152583025 -31705637 + L2 LINE L2 3000 3312 -1 380 299 94 84 chr4 152583558 152583939 -31704723 - L1MC/D LINE L1 -2166 5642 5258 676 228 41 15 chr4 152584019 152584216 -31704446 - MLT1A2 LTR MaLR 0 374 173 189 147 0 0 chr4 152584234 152584268 -31704394 + (GA)n Simple_repeat Simple_repeat 2 35 0 631 179 11 78 chr4 152584268 152584447 -31704215 - MLT1A2 LTR MaLR -198 167 1 2184 128 0 7 chr4 152584789 152585095 -31703567 - AluSx SINE Alu -8 304 1 492 298 94 44 chr4 152586404 152586662 -31702000 + LTR16A LTR ERVL 1 289 -161 1361 78 0 0 chr4 152586662 152586842 -31701820 - L1PA5 LINE L1 -2 6152 5973 492 298 94 44 chr4 152586842 152586996 -31701666 + LTR16A LTR ERVL 289 434 -16 2193 90 3 21 chr4 152587034 152587323 -31701339 - AluSg SINE Alu -26 284 1 189 390 24 55 chr4 152587553 152587717 -31700945 + L2 LINE L2 3060 3218 -54 27 62 0 0 chr4 152587717 152587765 -31700897 + AT_rich Low_complexity Low_complexity 1 48 0 302 239 74 49 chr4 152587872 152588035 -31700627 + MER112 DNA MER1_type 3 169 -91 2178 110 13 7 chr4 152589111 152589421 -31699241 + AluSx SINE Alu 1 312 0 937 137 44 20 chr4 152589939 152590143 -31698519 + L1MA7 LINE L1 6082 6290 -1 228 301 49 14 chr4 152590432 152590575 -31698087 + LTR16C LTR ERVL 284 431 -60 213 369 83 13 chr4 152592369 152592526 -31696136 + MIR SINE MIR 6 173 -89 11506 140 34 8 chr4 152593492 152593638 -31695024 + Ricksha_c DNA DNA 10 151 -3147 1242 123 5 10 chr4 152593638 152593833 -31694829 - L1PA8A LINE L1 0 6131 5938 11506 140 34 8 chr4 152593833 152595715 -31692947 + Ricksha_c DNA DNA 151 2046 -44 1276 223 179 14 chr4 152596545 152596586 -31692076 - MLT2B2 LTR ERVL -8 507 474 225 0 0 0 chr4 152596586 152596611 -31692051 + (TC)n Simple_repeat Simple_repeat 2 26 0 1276 223 179 14 chr4 152596611 152597004 -31691658 - MLT2B2 LTR ERVL -41 474 1 562 248 13 27 chr4 152597404 152597553 -31691109 - MER63A DNA MER1_type 0 210 64 858 211 109 80 chr4 152597587 152597962 -31690700 - MLT1D LTR MaLR -117 388 3 195 114 0 0 chr4 152597976 152598011 -31690651 + (TTTTTG)n Simple_repeat Simple_repeat 1 35 0 500 259 89 6 chr4 152598960 152599118 -31689544 + MER5B DNA MER1_type 4 174 -4 32 26 0 0 chr4 152599433 152599472 -31689190 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr4 152599853 152599882 -31688780 + AT_rich Low_complexity Low_complexity 1 29 0 834 247 118 104 chr4 152599915 152600203 -31688459 - HAL1b LINE L1 -17 1331 1048 2224 85 4 0 chr4 152600203 152600484 -31688178 - AluSx SINE Alu -12 300 19 834 247 118 104 chr4 152600484 152601352 -31687310 - HAL1b LINE L1 -300 1048 159 1646 200 11 50 chr4 152601378 152601758 -31686904 - MLT1A1 LTR MaLR 0 365 1 622 170 21 43 chr4 152602278 152602419 -31686243 - MLT1A1 LTR MaLR -227 138 1 192 125 0 0 chr4 152603136 152603168 -31685494 + (CA)n Simple_repeat Simple_repeat 1 32 0 2403 301 66 14 chr4 152603554 152604644 -31684018 + L2 LINE L2 2157 3311 -2 319 350 7 69 chr4 152605081 152605384 -31683278 + L1MEd LINE L1 602 885 -5234 226 214 10 41 chr4 152605396 152605494 -31683168 + L1MEd LINE L1 919 1013 -5297 1302 146 133 32 chr4 152605501 152605738 -31682924 - L1MCa LINE L1 -4314 2112 1900 2108 118 32 35 chr4 152605738 152606112 -31682550 - THE1C LTR MaLR 0 375 3 1302 146 133 32 chr4 152606112 152606269 -31682393 - L1MCa LINE L1 -4526 1900 1579 635 215 0 0 chr4 152606270 152606400 -31682262 - MLT1A1 LTR MaLR -235 130 1 2132 119 6 13 chr4 152606446 152606757 -31681905 - AluSx SINE Alu -1 311 3 5086 182 16 16 chr4 152606763 152607797 -31680865 - L1MCa LINE L1 -5391 1035 2 1695 165 3 34 chr4 152609537 152609861 -31678801 - AluJb SINE Alu 0 315 1 351 278 79 16 chr4 152611063 152611189 -31677473 + L2 LINE L2 3180 3313 0 2390 77 0 3 chr4 152611422 152611732 -31676930 + AluY SINE Alu 1 309 -2 2098 137 0 0 chr4 152611745 152612045 -31676617 + AluSx SINE Alu 1 300 -12 201 329 112 33 chr4 152615932 152616084 -31672578 - L3b LINE CR1 -111 1472 1309 910 72 0 0 chr4 152617735 152617885 -31670777 + AluSg/x SINE Alu 171 320 0 519 17 0 0 chr4 152618416 152618476 -31670186 + (GA)n Simple_repeat Simple_repeat 1 60 0 244 250 0 15 chr4 152618536 152618604 -31670058 + MLT1K LTR MaLR 522 588 0 1201 234 89 66 chr4 152618933 152619441 -31669221 + MLT1F LTR MaLR 3 591 -2 252 208 14 42 chr4 152620307 152620379 -31668283 - MER63A DNA MER1_type -37 173 104 871 214 74 29 chr4 152620406 152620715 -31667947 + L1ME3A LINE L1 5848 6170 0 219 221 0 58 chr4 152620746 152620832 -31667830 + A-rich Low_complexity Low_complexity 2 82 0 186 286 127 0 chr4 152621356 152621419 -31667243 + MIR SINE MIR 91 161 -101 305 248 16 41 chr4 152621772 152621893 -31666769 + MER103 DNA DNA 2 119 -47 370 233 16 0 chr4 152622220 152622483 -31666179 + (TA)n Simple_repeat Simple_repeat 1 267 0 1333 203 37 9 chr4 152622491 152622812 -31665850 - MER63B DNA MER1_type -106 330 1 2030 224 40 22 chr4 152623258 152623753 -31664909 - MLT1D LTR MaLR 0 505 2 622 139 65 0 chr4 152625655 152625763 -31662899 - L1MA5A LINE L1 -4 6293 6179 577 183 183 11 chr4 152626494 152626605 -31662057 - LTR37B LTR ERV1 -25 443 352 363 44 0 0 chr4 152626605 152626650 -31662012 + (CA)n Simple_repeat Simple_repeat 2 46 0 577 183 183 11 chr4 152626650 152626713 -31661949 - LTR37B LTR ERV1 -116 352 239 22821 68 2 1 chr4 152627432 152630404 -31658258 - L1PA5 LINE L1 -2967 3179 204 17617 40 10 0 chr4 152630405 152633345 -31655317 + L1PA5 LINE L1 3200 6147 -7 237 175 18 0 chr4 152633367 152633424 -31655238 + L1ME4a LINE L1 5991 6048 -73 408 170 22 0 chr4 152634187 152634322 -31654340 + (TA)n Simple_repeat Simple_repeat 2 139 0 301 218 59 6 chr4 152634335 152634505 -31654157 + (TA)n Simple_repeat Simple_repeat 2 180 0 294 299 31 10 chr4 152634594 152634691 -31653971 + L2 LINE L2 3163 3261 -11 1663 235 60 9 chr4 152634860 152635306 -31653356 + MER119 DNA MER1_type 1 469 -114 414 235 9 21 chr4 152637653 152637882 -31650780 + CT-rich Low_complexity Low_complexity 1 226 0 2087 100 0 43 chr4 152638703 152639003 -31649659 - AluSg1 SINE Alu -19 290 4 2294 103 0 0 chr4 152639936 152640238 -31648424 - AluSg SINE Alu -6 304 3 34 65 0 0 chr4 152642269 152642331 -31646331 + AT_rich Low_complexity Low_complexity 1 62 0 1971 148 7 0 chr4 152642577 152642875 -31645787 + AluSx SINE Alu 6 305 -7 632 274 47 19 chr4 152643220 152643432 -31645230 - L2 LINE L2 0 3313 3096 549 281 74 46 chr4 152643646 152644350 -31644312 - L1M2 LINE L1 -369 5797 5121 629 66 19 19 chr4 152644414 152644520 -31644142 + (TCTA)n Simple_repeat Simple_repeat 4 109 0 746 343 85 27 chr4 152644565 152644976 -31643686 + LTR16A LTR ERVL 16 450 0 1252 325 72 12 chr4 152644976 152645618 -31643044 + HERV16 LTR ERVL 1 680 -4316 397 274 34 0 chr4 152645675 152645792 -31642870 + HERV16 LTR ERVL 755 875 -4121 4738 150 66 39 chr4 152645804 152646886 -31641776 + pTR5 LTR ERV1 743 2025 -413 291 245 31 20 chr4 152646886 152646984 -31641678 + LTR30 LTR ERV1 544 642 -80 1479 122 5 5 chr4 152646986 152647208 -31641454 + pTR5 LTR ERV1 171 392 -2046 669 301 18 55 chr4 152647213 152647419 -31641243 + HERV16 LTR ERVL 891 1103 -3893 1961 158 14 22 chr4 152647419 152647787 -31640875 + MLT1A1 LTR MaLR 1 365 0 669 301 18 55 chr4 152647787 152647854 -31640808 + HERV16 LTR ERVL 1103 1153 -3843 1562 110 0 9 chr4 152647854 152648072 -31640590 + AluSc SINE Alu 80 295 -14 669 301 18 55 chr4 152648072 152648123 -31640539 + HERV16 LTR ERVL 1153 1204 -3792 747 322 87 48 chr4 152648567 152649627 -31639035 + ERVL LTR ERVL 4174 5326 -370 339 285 314 0 chr4 152649968 152650140 -31638522 + LTR16A LTR ERVL 225 450 0 347 332 48 10 chr4 152650336 152650625 -31638037 - L1M4 LINE L1 -1333 4813 4514 1983 136 0 0 chr4 152651556 152651829 -31636833 + AluSx SINE Alu 7 279 -33 222 37 0 0 chr4 152651832 152651859 -31636803 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 489 355 43 50 chr4 152651900 152652638 -31636024 + L1MEc LINE L1 36 768 -5628 2469 245 24 22 chr4 152653596 152654445 -31634217 + L1MB7 LINE L1 2763 3612 -2534 1010 241 86 67 chr4 152654446 152654909 -31633753 - MLT1C LTR MaLR -1 504 1 5526 216 45 26 chr4 152654909 152655889 -31632773 + L1MB7 LINE L1 3611 4570 -1614 2990 100 0 2 chr4 152655889 152656310 -31632352 + L1PB1 LINE L1 5730 6149 -2 5526 216 45 26 chr4 152656310 152657852 -31630810 + L1MB7 LINE L1 4570 6183 -1 573 295 33 6 chr4 152658272 152658455 -31630207 - MIR SINE MIR 0 262 75 294 342 39 61 chr4 152658575 152658806 -31629856 + MIR SINE MIR 12 237 -25 202 157 20 20 chr4 152659929 152659980 -31628682 + T-rich Low_complexity Low_complexity 3 53 0 3770 132 27 14 chr4 152660544 152661171 -31627491 - MER41B LTR ERV1 0 635 1 304 299 11 11 chr4 152661641 152661728 -31626934 + MIR3 SINE MIR 112 198 -10 180 200 0 0 chr4 152661827 152661872 -31626790 + CT-rich Low_complexity Low_complexity 1 45 0 233 305 135 14 chr4 152662569 152662710 -31625952 - MIR SINE MIR -98 164 7 1931 202 80 31 chr4 152663320 152663810 -31624852 + LTR40a LTR ERVL 4 517 -2 2302 87 0 7 chr4 152663961 152664260 -31624402 + AluY SINE Alu 1 297 -14 273 102 0 0 chr4 152665229 152665278 -31623384 - LTR66 LTR ERVL -168 442 394 210 212 15 30 chr4 152665280 152665346 -31623316 + (CATATA)n Simple_repeat Simple_repeat 4 68 0 1227 264 156 36 chr4 152665360 152666603 -31622059 - L1ME3 LINE L1 -89 6056 4581 2136 128 0 0 chr4 152666603 152666893 -31621769 + AluSx SINE Alu 3 292 -20 1227 264 156 36 chr4 152666893 152667209 -31621453 - L1ME3 LINE L1 -1564 4581 4304 316 128 122 100 chr4 152667222 152667340 -31621322 - MLT1F LTR MaLR -13 536 410 1089 293 45 22 chr4 152667621 152668250 -31620412 - L1ME3 LINE L1 -1796 4333 3691 407 289 69 32 chr4 152668256 152668657 -31620005 - L1ME3 LINE L1 -4866 1253 886 208 255 0 0 chr4 152668753 152668800 -31619862 + T-rich Low_complexity Low_complexity 4 50 0 377 200 42 0 chr4 152669171 152669266 -31619396 + MER53 DNA DNA 91 189 0 288 276 82 10 chr4 152669639 152669737 -31618925 - MIR SINE MIR -30 232 128 7031 44 7 0 chr4 152670068 152670934 -31617728 + L1PA5 LINE L1 5282 6153 -1 308 325 0 0 chr4 152671794 152671877 -31616785 + L3 LINE CR1 693 775 -802 293 143 0 0 chr4 152671954 152672003 -31616659 - L2 LINE L2 -1 3312 3264 185 237 0 13 chr4 152672182 152672258 -31616404 + (CATATA)n Simple_repeat Simple_repeat 1 75 0 27 29 0 0 chr4 152672338 152672372 -31616290 + AT_rich Low_complexity Low_complexity 1 34 0 2164 100 0 35 chr4 152672569 152672880 -31615782 - AluSq SINE Alu -5 308 9 2274 189 55 36 chr4 152673852 152674323 -31614339 - MLT2B3 LTR ERVL 0 554 75 480 97 0 14 chr4 152674420 152674492 -31614170 - MLT2B3 LTR ERVL -483 71 1 228 254 32 16 chr4 152676088 152676151 -31612511 - MLT1J2 LTR MaLR -2 448 385 710 241 139 20 chr4 152676191 152676459 -31612203 - MLT1J2 LTR MaLR -150 300 2 243 61 0 0 chr4 152677362 152677395 -31611267 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 3758 103 13 2 chr4 152677420 152677964 -31610698 - L1PB2 LINE L1 -11 6140 5591 1553 176 73 7 chr4 152678254 152678556 -31610106 + MLT1A1 LTR MaLR 11 332 -33 225 209 0 0 chr4 152679375 152679418 -31609244 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2116 187 50 8 chr4 152679687 152680089 -31608573 + MSTB1 LTR MaLR 6 424 -8 21 36 0 0 chr4 152681084 152681112 -31607550 + AT_rich Low_complexity Low_complexity 1 28 0 384 202 0 131 chr4 152682802 152682901 -31605761 + Charlie1 DNA MER1_type 1 86 -2675 29 47 0 0 chr4 152683841 152683884 -31604778 + AT_rich Low_complexity Low_complexity 1 43 0 2018 181 18 91 chr4 152684194 152684702 -31603960 - MER70A LTR ERVL -1 471 1 25 0 0 0 chr4 152684878 152684903 -31603759 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr4 152684920 152684952 -31603710 + AT_rich Low_complexity Low_complexity 1 32 0 29 47 0 0 chr4 152685272 152685315 -31603347 + AT_rich Low_complexity Low_complexity 1 43 0 1556 334 91 21 chr4 152685552 152686579 -31602083 - L2 LINE L2 -366 2948 1851 401 110 0 122 chr4 152686636 152686718 -31601944 - MADE1 DNA Mariner -2 78 7 733 232 6 12 chr4 152686924 152687092 -31601570 - MER58 DNA MER1_type -156 185 19 616 293 84 66 chr4 152687506 152687898 -31600764 + LTR33A LTR ERVL 125 523 0 242 206 43 54 chr4 152688555 152688578 -31600084 + L1ME LINE L1 5423 5445 -717 1057 216 52 17 chr4 152688578 152688809 -31599853 - MER8 DNA MER2_type 0 239 1 242 206 43 54 chr4 152688809 152688877 -31599785 + L1ME LINE L1 5445 5513 -649 262 324 15 0 chr4 152689078 152689214 -31599448 + L1ME LINE L1 5746 5883 -281 213 190 0 63 chr4 152689222 152689301 -31599361 + (TATAA)n Simple_repeat Simple_repeat 5 78 0 405 307 80 64 chr4 152689513 152689839 -31598823 + L1M4 LINE L1 3365 3695 -2451 280 264 33 16 chr4 152690132 152690253 -31598409 - L1MEd LINE L1 -3598 2531 2409 636 318 100 0 chr4 152690411 152690650 -31598012 - MLT1J1 LTR MaLR -130 316 54 355 383 13 0 chr4 152690654 152690803 -31597859 - HAL1 LINE L1 -885 1622 1472 * 404 287 50 63 chr4 152690778 152691095 -31597567 - L1MEd LINE L1 -4890 1229 917 226 349 93 23 chr4 152692312 152692484 -31596178 - L2 LINE L2 -557 2757 2574 2143 199 29 7 chr4 152692488 152692896 -31595766 - MSTB LTR MaLR -9 417 1 23 68 0 0 chr4 152693161 152693205 -31595457 + AT_rich Low_complexity Low_complexity 1 44 0 1005 192 50 140 chr4 152693444 152693845 -31594817 + MLT1A1 LTR MaLR 1 365 0 2269 85 0 3 chr4 152694559 152694852 -31593810 - AluSc SINE Alu -17 292 1 414 0 0 0 chr4 152694861 152694907 -31593755 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 2179 41 26 0 chr4 152694907 152695175 -31593487 - L1PA4 LINE L1 -16 6139 5865 275 300 0 0 chr4 152695209 152695279 -31593383 + GA-rich Low_complexity Low_complexity 3 72 0 203 216 20 0 chr4 152695938 152695989 -31592673 + (TA)n Simple_repeat Simple_repeat 1 52 0 206 205 0 0 chr4 152697823 152697862 -31590800 - MIR SINE MIR -6 256 218 180 214 0 89 chr4 152697933 152697989 -31590673 + L2 LINE L2 1656 1706 -1608 1221 172 4 92 chr4 152699028 152699111 -31589551 + MSTB1 LTR MaLR 193 282 -150 2113 117 17 10 chr4 152699111 152699411 -31589251 - AluSx SINE Alu -8 304 3 1221 172 4 92 chr4 152699411 152699589 -31589073 + MSTB1 LTR MaLR 282 431 -1 401 284 134 9 chr4 152699657 152699889 -31588773 - MIR SINE MIR 0 262 2 25 51 0 0 chr4 152699908 152699947 -31588715 + AT_rich Low_complexity Low_complexity 1 39 0 197 32 0 32 chr4 152700668 152700699 -31587963 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 572 249 117 56 chr4 152700822 152701071 -31587591 - LTR16A1 LTR ERVL -8 449 186 1284 316 44 42 chr4 152702462 152703215 -31585447 - MER110-int LTR ERV1 -1622 3025 2272 288 173 36 65 chr4 152703274 152703413 -31585249 + (TTATA)n Simple_repeat Simple_repeat 2 136 0 504 239 46 86 chr4 152703413 152703610 -31585052 - MER110-int LTR ERV1 -2423 2224 2036 237 264 35 58 chr4 152703623 152703710 -31584952 - MER5B DNA MER1_type -90 88 4 319 201 112 128 chr4 152703917 152703967 -31584695 + L1ME4a LINE L1 5943 5992 -129 2240 117 0 0 chr4 152703967 152704275 -31584387 - AluSc SINE Alu -1 308 1 319 201 112 128 chr4 152704275 152704403 -31584259 + L1ME4a LINE L1 5992 6118 -3 332 366 23 43 chr4 152705097 152705268 -31583394 + MIR SINE MIR 6 172 -65 1315 230 42 17 chr4 152705636 152705992 -31582670 + MLT1A1 LTR MaLR 1 365 0 2288 128 0 0 chr4 152706020 152706325 -31582337 - AluSx SINE Alu -7 305 1 377 297 59 47 chr4 152709015 152709271 -31579391 + MIR SINE MIR 4 261 -1 3387 69 2 7 chr4 152709966 152710416 -31578246 - LTR7 LTR ERV1 -2 448 1 1407 69 9 28 chr4 152710416 152710633 -31578029 - HERVH LTR ERV1 0 7713 7501 1683 157 42 18 chr4 152711083 152711420 -31577242 - L1MA8 LINE L1 -4 6287 5943 385 254 154 6 chr4 152712244 152712413 -31576249 - L1M4 LINE L1 -2189 3957 3764 210 347 36 48 chr4 152712525 152712692 -31575970 + MER5A DNA MER1_type 16 180 -9 321 333 19 19 chr4 152712806 152712965 -31575697 - HAL1b LINE L1 -489 859 701 383 77 0 0 chr4 152712986 152713038 -31575624 - MADE1 DNA Mariner 0 80 29 1708 100 28 4 chr4 152713038 152713289 -31575373 + AluSx SINE Alu 1 257 -55 5644 103 18 11 chr4 152713398 152714987 -31573675 - L1PA8A LINE L1 -116 6015 4413 297 304 25 80 chr4 152715303 152715540 -31573122 + MERVL LTR ERVL 3624 3847 -1638 396 206 82 0 chr4 152715736 152715809 -31572853 + MERVL LTR ERVL 4099 4177 -1477 373 246 87 121 chr4 152716376 152716938 -31571724 - LTR49-int LTR ERV1 -937 5394 4852 2263 102 0 0 chr4 152717006 152717299 -31571363 - AluSg SINE Alu -17 293 1 229 225 0 56 chr4 152717994 152718065 -31570597 - HAL1 LINE L1 -187 2320 2254 * 1425 305 43 16 chr4 152718040 152718685 -31569977 + L1ME3A LINE L1 5391 6053 -117 318 209 33 11 chr4 152718686 152718777 -31569885 + L1ME3A LINE L1 6078 6170 0 2447 86 0 0 chr4 152718789 152719093 -31569569 + AluSg SINE Alu 1 304 -6 262 345 9 9 chr4 152719147 152719263 -31569399 + L1MC/D LINE L1 5526 5641 -2167 22 70 0 0 chr4 152719322 152719365 -31569297 + AT_rich Low_complexity Low_complexity 1 43 0 891 78 9 0 chr4 152719675 152719790 -31568872 + AluSp/q SINE Alu 187 302 -11 24 32 0 0 chr4 152719890 152719921 -31568741 + AT_rich Low_complexity Low_complexity 1 31 0 238 158 61 24 chr4 152720067 152720149 -31568513 + A-rich Low_complexity Low_complexity 3 87 0 322 264 21 79 chr4 152720496 152720636 -31568026 + L1MC/D LINE L1 5119 5250 -896 406 305 143 30 chr4 152720728 152721099 -31567563 + L1MC/D LINE L1 5410 5822 -1986 28 61 0 0 chr4 152721205 152721254 -31567408 + AT_rich Low_complexity Low_complexity 1 49 0 207 0 0 0 chr4 152722576 152722599 -31566063 + (TTG)n Simple_repeat Simple_repeat 2 24 0 225 254 16 48 chr4 152722904 152722967 -31565695 + L2 LINE L2 3122 3182 -90 940 108 0 8 chr4 152722980 152723110 -31565552 - FLAM_C SINE Alu 0 133 5 21 36 0 0 chr4 152723212 152723240 -31565422 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 152723613 152723636 -31565026 + AT_rich Low_complexity Low_complexity 1 23 0 24603 27 0 0 chr4 152723961 152726920 -31561742 - L1P LINE L1 -899 5247 2289 3604 167 40 15 chr4 152726892 152727640 -31561022 - L1 LINE L1 -1098 5048 4282 * 36 23 0 0 chr4 152727765 152727808 -31560854 + AT_rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr4 152728947 152728971 -31559691 + AT_rich Low_complexity Low_complexity 1 24 0 2088 201 16 5 chr4 152729659 152730088 -31558574 + L1MC3 LINE L1 7288 7721 -64 3652 212 10 50 chr4 152730090 152730981 -31557681 + L1MC2 LINE L1 5488 6342 -2 21 0 0 0 chr4 152731398 152731419 -31557243 + AT_rich Low_complexity Low_complexity 1 21 0 4162 223 59 34 chr4 152731508 152733029 -31555633 - L1MD2 LINE L1 -31 6328 4758 295 268 159 51 chr4 152733280 152733418 -31555244 - MIR SINE MIR -108 154 2 269 278 0 0 chr4 152733577 152733649 -31555013 - L2 LINE L2 -84 3229 3158 845 243 99 40 chr4 152733691 152733995 -31554667 + MER46C DNA MER2_type 10 331 -7 455 278 137 42 chr4 152734036 152734277 -31554385 - L2 LINE L2 -210 3103 2840 4337 144 81 21 chr4 152734353 152735208 -31553454 - MER4D LTR ERV1 0 866 1 213 39 0 0 chr4 152735952 152735978 -31552684 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1297 204 83 4 chr4 152736474 152736738 -31551924 - MLT1B LTR MaLR 0 390 106 1435 230 106 34 chr4 152736900 152737374 -31551288 + MLT2B1 LTR ERVL 5 512 -8 531 164 27 27 chr4 152737735 152737845 -31550817 - MLT1B LTR MaLR -280 110 1 1908 160 128 8 chr4 152738756 152739138 -31549524 - MSTA LTR MaLR 0 428 1 9190 168 31 5 chr4 152739138 152740746 -31547916 - MSTA-int LTR MaLR 0 1651 2 2265 114 144 5 chr4 152740747 152741123 -31547539 - MSTA LTR MaLR 0 428 1 403 276 89 0 chr4 152741974 152742097 -31546565 - MIR SINE MIR -13 249 116 192 40 0 0 chr4 152742232 152742257 -31546405 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1957 136 0 31 chr4 152742259 152742553 -31546109 - AluSx SINE Alu -27 285 1 263 302 0 0 chr4 152743115 152743178 -31545484 - L2 LINE L2 0 3313 3251 380 233 67 6 chr4 152743638 152743743 -31544919 + MLT1J LTR MaLR 51 201 -289 269 342 18 0 chr4 152744146 152744260 -31544402 - MLT1L LTR MaLR -26 589 474 247 275 25 0 chr4 152744293 152744373 -31544289 - MLT1L LTR MaLR -207 408 327 3698 157 13 0 chr4 152744397 152745026 -31543636 + L1MC1 LINE L1 5688 6324 -9 83 58 0 0 chr4 152745163 152745302 -31543360 + AT_rich Low_complexity Low_complexity 1 139 0 344 233 56 0 chr4 152745509 152745599 -31543063 - MIR SINE MIR -28 234 140 235 115 58 19 chr4 152745841 152745893 -31542769 - MLT1H LTR MaLR -3 546 493 3636 121 93 8 chr4 152746652 152747246 -31541416 - LTR9B LTR ERV1 0 644 1 185 236 34 124 chr4 152747297 152747386 -31541276 - MIR3 SINE MIR -47 161 81 195 225 50 0 chr4 152747403 152747443 -31541219 + MIR SINE MIR 108 149 -59 33 66 0 0 chr4 152747920 152747981 -31540681 + AT_rich Low_complexity Low_complexity 1 61 0 284 256 22 11 chr4 152748122 152748212 -31540450 - MIR3 SINE MIR -9 199 109 257 169 0 99 chr4 152748591 152748662 -31540000 - L1ME2 LINE L1 -155 6009 5946 30 27 0 0 chr4 152748878 152748915 -31539747 + AT_rich Low_complexity Low_complexity 1 37 0 260 141 70 28 chr4 152748916 152748987 -31539675 + (CAATT)n Simple_repeat Simple_repeat 4 77 0 201 327 73 33 chr4 152748997 152749147 -31539515 + L2 LINE L2 2798 2953 -361 218 217 43 0 chr4 152749371 152749417 -31539245 + MIR SINE MIR 98 145 -63 232 352 75 15 chr4 152749422 152749621 -31539041 + MIR SINE MIR 2 212 -50 195 305 0 51 chr4 152749688 152749747 -31538915 - L2 LINE L2 -11 3261 3206 212 250 0 19 chr4 152749762 152749814 -31538848 + L2 LINE L2 3213 3263 -9 328 374 0 0 chr4 152750080 152750179 -31538483 - L2 LINE L2 -366 2947 2849 730 231 12 6 chr4 152750181 152750341 -31538321 + MER67C LTR ERV1 244 404 -306 292 232 12 12 chr4 152750408 152750490 -31538172 + MER67D LTR ERV1 433 514 0 934 266 50 39 chr4 152750490 152750601 -31538061 - L2 LINE L2 -743 2571 2463 1743 174 45 3 chr4 152750601 152750888 -31537774 + AluSx SINE Alu 1 299 -13 934 266 50 39 chr4 152750888 152751114 -31537548 - L2 LINE L2 -851 2463 2230 2130 160 8 45 chr4 152751114 152751490 -31537172 + MSTC LTR MaLR 1 362 -66 371 156 0 11 chr4 152751499 152751589 -31537073 + (TA)n Simple_repeat Simple_repeat 2 90 0 234 0 0 0 chr4 152751596 152751622 -31537040 + (TG)n Simple_repeat Simple_repeat 2 27 0 320 161 0 0 chr4 152751622 152751678 -31536984 + MSTC LTR MaLR 373 428 0 1824 240 76 85 chr4 152751678 152752510 -31536152 - L2 LINE L2 -1080 2234 1411 312 241 65 9 chr4 152752991 152753099 -31535563 - MIR SINE MIR 0 262 149 1682 181 134 29 chr4 152753118 152753603 -31535059 - LTR10A LTR ERV1 -61 548 13 265 322 22 0 chr4 152753614 152753704 -31534958 - MIR SINE MIR -118 144 53 1655 205 15 15 chr4 152754141 152754432 -31534230 - MLT2C1 LTR ERVL -66 331 38 1870 179 28 6 chr4 152754432 152754789 -31533873 - MLT1A1 LTR MaLR 0 365 1 1655 205 15 15 chr4 152754789 152754828 -31533834 - MLT2C1 LTR ERVL -358 39 1 363 302 103 52 chr4 152755038 152755225 -31533437 + MLT1J2 LTR MaLR 1 177 -273 2083 129 36 38 chr4 152755225 152755590 -31533072 + THE1B LTR MaLR 1 364 0 10117 109 35 37 chr4 152755590 152757172 -31531490 + THE1B-int LTR MaLR 1 1580 0 2271 109 71 6 chr4 152757174 152757514 -31531148 + THE1B LTR MaLR 3 364 0 363 302 103 52 chr4 152757514 152757723 -31530939 + MLT1J2 LTR MaLR 177 392 -58 474 252 16 16 chr4 152757948 152758071 -31530591 + L2 LINE L2 3191 3313 0 2281 94 3 3 chr4 152759527 152759834 -31528828 - AluY SINE Alu -4 307 1 397 293 64 48 chr4 152760371 152760559 -31528103 - MIR SINE MIR -51 211 21 244 218 35 69 chr4 152760590 152760659 -31528003 - L2 LINE L2 -57 3256 3189 1791 194 93 55 chr4 152760659 152760729 -31527933 - MER67D LTR ERV1 0 514 448 222 37 0 0 chr4 152760729 152760756 -31527906 + (GA)n Simple_repeat Simple_repeat 2 28 0 1791 194 93 55 chr4 152760756 152761180 -31527482 - MER67D LTR ERV1 -66 448 1 244 218 35 69 chr4 152761180 152761197 -31527465 - L2 LINE L2 -124 3189 3173 20722 84 14 17 chr4 152762071 152765071 -31523591 - HERVH LTR ERV1 -4721 2992 1 3413 62 0 7 chr4 152765073 152765524 -31523138 - LTR7 LTR ERV1 -2 448 1 321 264 45 45 chr4 152765646 152765756 -31522906 - MIR SINE MIR -104 158 49 2794 96 86 2 chr4 152766013 152766442 -31522220 - MER4C LTR ERV1 0 465 1 15916 158 52 48 chr4 152766460 152766642 -31522020 - MER4C-int LTR ERV1 -14 6584 6404 293 45 0 23 chr4 152766642 152766686 -31521976 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 15916 158 52 48 chr4 152766686 152768090 -31520572 - MER4C-int LTR ERV1 -194 6404 5007 2161 122 0 0 chr4 152768090 152768384 -31520278 + AluSg SINE Alu 1 294 -16 15916 158 52 48 chr4 152768384 152769456 -31519206 - MER4C-int LTR ERV1 -1591 5007 3941 1504 215 3 7 chr4 152769456 152769763 -31518899 - AluJb SINE Alu -6 306 1 15916 158 52 48 chr4 152769763 152770937 -31517725 - MER4C-int LTR ERV1 -2657 3941 2735 1822 226 58 33 chr4 152770749 152771332 -31517330 - LTR57-int LTR ERVL -3758 1585 988 * 6135 152 129 86 chr4 152771029 152771614 -31517048 - MER4C-int LTR ERV1 -4113 2485 1926 207 0 0 0 chr4 152771614 152771637 -31517025 + (TA)n Simple_repeat Simple_repeat 2 24 0 6135 152 129 86 chr4 152771637 152771923 -31516739 - MER4C-int LTR ERV1 -4672 1926 1654 4576 142 90 11 chr4 152771923 152772760 -31515902 + MER4D LTR ERV1 1 903 0 6135 152 129 86 chr4 152772760 152774200 -31514462 - MER4C-int LTR ERV1 -4944 1654 24 2649 106 96 5 chr4 152774217 152774643 -31514019 - MER4C LTR ERV1 0 465 1 22 0 0 0 chr4 152774839 152774861 -31513801 + AT_rich Low_complexity Low_complexity 1 22 0 483 18 0 0 chr4 152775125 152775181 -31513481 + (TCCA)n Simple_repeat Simple_repeat 2 57 0 3994 155 39 11 chr4 152776503 152776666 -31511996 + L1MB1 LINE L1 5439 5596 -572 2086 105 31 3 chr4 152776666 152776960 -31511702 + AluSg SINE Alu 1 302 -8 3994 155 39 11 chr4 152776960 152777135 -31511527 + L1MB1 LINE L1 5596 5765 -403 453 36 0 0 chr4 152777135 152777190 -31511472 + (TATAA)n Simple_repeat Simple_repeat 5 59 0 3994 155 39 11 chr4 152777190 152777560 -31511102 + L1MB1 LINE L1 5765 6168 0 3020 115 14 21 chr4 152778391 152778903 -31509759 - L1MA4 LINE L1 -6 6294 5787 1338 43 27 37 chr4 152778975 152779162 -31509500 - L1PA4 LINE L1 -2 6153 5969 2256 122 11 8 chr4 152779225 152779579 -31509083 - THE1A LTR MaLR 0 355 1 442 275 145 34 chr4 152781581 152781806 -31506856 + MLT1H LTR MaLR 323 547 -2 231 305 11 21 chr4 152781813 152781908 -31506754 + MLT1H-int LTR MaLR 6 99 -1272 5576 134 19 1 chr4 152782604 152783478 -31505184 + L1PA15 LINE L1 5267 6156 -9 226 244 31 118 chr4 152783728 152783855 -31504807 + MLT1H-int LTR MaLR 1023 1138 -233 1761 175 34 6 chr4 152784034 152784359 -31504303 - MER7A DNA MER2_type -13 333 2 303 244 78 11 chr4 152784810 152784900 -31503762 + MLT1H LTR MaLR 447 542 -7 262 397 43 0 chr4 152784934 152785050 -31503612 + L2 LINE L2 3121 3241 -31 22 0 0 0 chr4 152785151 152785173 -31503489 + AT_rich Low_complexity Low_complexity 1 22 0 2320 43 3 7 chr4 152788396 152788702 -31499960 - AluY SINE Alu 0 305 1 1092 258 148 5 chr4 152788702 152789276 -31499386 - L1MDa LINE L1 -2387 3693 3038 1829 256 66 17 chr4 152789296 152790043 -31498619 - L1MDa LINE L1 -3113 2967 2185 904 258 61 71 chr4 152790077 152790732 -31497930 - L1MDa LINE L1 -4587 1493 833 1965 88 39 3 chr4 152790732 152791037 -31497625 - L1PA7 LINE L1 -2 6152 5837 904 258 61 71 chr4 152791037 152791834 -31496828 - L1MDa LINE L1 -5247 833 6 230 254 56 49 chr4 152791907 152792049 -31496613 + Charlie4 DNA MER1_type 1025 1167 -794 242 284 32 21 chr4 152792247 152792342 -31496320 + MLT1J2 LTR MaLR 67 162 -288 21 82 0 0 chr4 152792775 152792824 -31495838 + AT_rich Low_complexity Low_complexity 1 49 0 576 329 76 33 chr4 152793505 152793927 -31494735 + L2 LINE L2 2457 2896 -418 659 126 0 9 chr4 152795308 152795419 -31493243 - L1PB1 LINE L1 -1 6150 6041 520 280 108 9 chr4 152795445 152795659 -31493003 + L1MC/D LINE L1 5570 5804 -2004 2233 105 3 0 chr4 152796297 152796601 -31492061 - AluSg SINE Alu -5 305 1 24 53 0 0 chr4 152796891 152796929 -31491733 + AT_rich Low_complexity Low_complexity 1 38 0 379 291 126 15 chr4 152797019 152797225 -31491437 - MIR SINE MIR -32 230 2 25 83 0 0 chr4 152797613 152797673 -31490989 + AT_rich Low_complexity Low_complexity 1 60 0 732 241 0 0 chr4 152797787 152797932 -31490730 - FRAM SINE Alu -31 145 1 552 242 153 12 chr4 152798018 152798217 -31490445 + MIR SINE MIR 34 259 -3 25 75 0 0 chr4 152798932 152798985 -31489677 + AT_rich Low_complexity Low_complexity 1 53 0 363 267 55 27 chr4 152799033 152799179 -31489483 - L1ME3 LINE L1 -7 6155 6006 1425 265 38 12 chr4 152799182 152799661 -31489001 - L1ME3 LINE L1 -192 5970 5480 1670 276 26 6 chr4 152799724 152800267 -31488395 - L1ME1 LINE L1 -4 6162 5609 1899 238 93 28 chr4 152800267 152800882 -31487780 - MLT1E2 LTR MaLR -2 624 1 1369 240 90 15 chr4 152800904 152801501 -31487161 - L1ME1 LINE L1 -587 5597 4959 1732 209 84 92 chr4 152801501 152802099 -31486563 - MLT1E LTR MaLR 0 593 1 1369 240 90 15 chr4 152802099 152802120 -31486542 - L1ME1 LINE L1 -1225 4959 4941 239 179 36 36 chr4 152802194 152802278 -31486384 + (TTATA)n Simple_repeat Simple_repeat 2 85 0 206 328 101 17 chr4 152802352 152802471 -31486191 + L3 LINE CR1 1276 1404 -173 255 128 0 0 chr4 152803112 152803151 -31485511 + MER65B LTR ERV1 1 39 -492 2210 147 17 32 chr4 152803202 152803287 -31485375 + MER65A LTR ERV1 45 130 -315 2129 125 16 37 chr4 152803287 152803670 -31484992 - THE1C LTR MaLR 0 375 1 2210 147 17 32 chr4 152803670 152803991 -31484671 + MER65A LTR ERV1 130 445 0 614 263 15 62 chr4 152804053 152804327 -31484335 + MER65A-int LTR ERV1 61 321 -4550 1826 247 83 34 chr4 152804372 152804984 -31483678 + MER65A-int LTR ERV1 434 1075 -3796 2366 149 23 45 chr4 152804987 152805502 -31483160 + MER65A-int LTR ERV1 1035 1538 -6582 252 215 165 8 chr4 152805616 152805737 -31482925 + MER65A-int LTR ERV1 1978 2117 -3006 1155 205 31 62 chr4 152805848 152806397 -31482265 + MER65A-int LTR ERV1 1728 2435 -4323 312 234 0 9 chr4 152806649 152806756 -31481906 + (TAGA)n Simple_repeat Simple_repeat 1 106 0 665 203 45 55 chr4 152806765 152806967 -31481695 + MER65A-int LTR ERV1 3536 3735 -2863 1129 179 24 34 chr4 152807049 152807340 -31481322 + MER65A-int LTR ERV1 3730 4017 -2581 2673 147 17 5 chr4 152807340 152807761 -31480901 + MSTB LTR MaLR 1 426 0 8109 191 26 19 chr4 152807761 152809401 -31479261 + MSTB-int LTR MaLR 1 1651 0 2257 174 31 5 chr4 152809401 152809816 -31478846 + MSTB LTR MaLR 1 426 0 564 249 69 90 chr4 152809817 152810207 -31478455 + MER65A-int LTR ERV1 4037 4418 -1913 1897 213 95 20 chr4 152810207 152810892 -31477770 + MER65A-int LTR ERV1 3075 3717 -1219 591 186 0 17 chr4 152810909 152811027 -31477635 + MSTB1 LTR MaLR 261 376 -56 267 195 171 37 chr4 152811029 152811111 -31477551 + MER65A-int LTR ERV1 3732 3824 -1112 267 293 13 0 chr4 152811095 152811135 -31477527 + MER65A-int LTR ERV1 3884 3927 -1009 255 61 0 0 chr4 152811135 152811168 -31477494 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 267 293 13 0 chr4 152811168 152811202 -31477460 + MER65A-int LTR ERV1 3927 3959 -977 2305 232 61 20 chr4 152811286 152812370 -31476292 + MER65A-int LTR ERV1 3603 4871 0 2639 130 9 41 chr4 152812370 152812830 -31475832 + MER65A LTR ERV1 1 445 0 188 388 23 0 chr4 152813245 152813374 -31475288 + L3 LINE CR1 686 817 -760 312 91 0 0 chr4 152813536 152813580 -31475082 + (TG)n Simple_repeat Simple_repeat 2 45 0 537 310 134 33 chr4 152813605 152813934 -31474728 + L3 LINE CR1 1215 1576 -1 302 338 88 0 chr4 152814331 152814479 -31474183 - MLT1L LTR MaLR -4 611 451 419 263 75 59 chr4 152814606 152814792 -31473870 - MLT1L LTR MaLR -426 189 1 1397 219 105 19 chr4 152814851 152815261 -31473401 - MLT1C LTR MaLR -22 445 1 21 36 0 0 chr4 152815975 152816003 -31472659 + AT_rich Low_complexity Low_complexity 1 28 0 564 134 0 0 chr4 152816838 152816935 -31471727 + AluY SINE Alu 213 309 -2 848 175 13 0 chr4 152817599 152817753 -31470909 - L1PB3 LINE L1 -7 6147 5992 248 217 29 0 chr4 152817906 152817975 -31470687 + (TA)n Simple_repeat Simple_repeat 1 71 0 422 306 29 10 chr4 152819445 152819651 -31469011 + L1M4 LINE L1 2343 2552 -3594 247 314 9 9 chr4 152819743 152819848 -31468814 + L1ME3A LINE L1 6009 6113 -57 205 203 54 0 chr4 152820159 152820233 -31468429 + (TAA)n Simple_repeat Simple_repeat 2 79 0 2069 241 101 13 chr4 152820336 152820879 -31467783 - MLT1E LTR MaLR -2 591 1 435 244 17 17 chr4 152820892 152821007 -31467655 - MIR SINE MIR -56 206 92 21 57 0 0 chr4 152822096 152822131 -31466531 + AT_rich Low_complexity Low_complexity 1 35 0 351 265 122 0 chr4 152822337 152822435 -31466227 - MIR SINE MIR -120 142 33 334 219 30 107 chr4 152822450 152822619 -31466043 + MER33 DNA MER1_type 20 175 -149 322 314 0 0 chr4 152823006 152823092 -31465570 - MIR SINE MIR -134 128 43 420 299 8 8 chr4 152823114 152823231 -31465431 + MER5B DNA MER1_type 1 117 -61 23 54 0 0 chr4 152823461 152823498 -31465164 + AT_rich Low_complexity Low_complexity 1 37 0 2443 80 34 6 chr4 152823504 152823855 -31464807 - L1PB1 LINE L1 -2 6149 5789 303 196 0 0 chr4 152823865 152823921 -31464741 + L1MC4 LINE L1 6648 6703 -1339 282 95 0 0 chr4 152823921 152823963 -31464699 + (TG)n Simple_repeat Simple_repeat 2 43 0 2818 90 0 0 chr4 152823968 152824345 -31464317 - L1P5 LINE L1 -360 5791 5415 220 260 0 0 chr4 152824353 152824403 -31464259 + MER5B DNA MER1_type 126 175 -3 196 281 47 0 chr4 152825082 152825146 -31463516 - MIR SINE MIR -30 232 166 207 0 0 0 chr4 152825270 152825293 -31463369 + (TA)n Simple_repeat Simple_repeat 1 23 0 321 218 0 0 chr4 152826601 152826679 -31461983 + GA-rich Low_complexity Low_complexity 2 79 0 1806 176 154 10 chr4 152826724 152827127 -31461535 + LOR1b LTR ERV1 1 461 0 351 277 36 9 chr4 152827140 152827252 -31461410 - MLT1K LTR MaLR -159 429 315 915 216 28 122 chr4 152827479 152827873 -31460789 - MLT1A1 LTR MaLR -5 360 4 2058 226 39 32 chr4 152827876 152828651 -31460011 - MLT-int LTR MaLR 0 1735 865 406 202 32 21 chr4 152828651 152828745 -31459917 - MSTC LTR MaLR -270 95 1 918 276 37 23 chr4 152829176 152829611 -31459051 - L1MEc LINE L1 -3369 2846 2406 2020 292 48 38 chr4 152829611 152830873 -31457789 - L1MEc LINE L1 -5063 1333 60 863 169 7 0 chr4 152830885 152831027 -31457635 - FLAM_C SINE Alu 0 143 1 38 75 0 0 chr4 152831598 152831678 -31456984 + AT_rich Low_complexity Low_complexity 1 80 0 949 303 46 48 chr4 152831684 152832139 -31456523 - MER20B DNA MER1_type -287 496 43 1742 182 87 3 chr4 152832283 152832618 -31456044 + MLT1A1 LTR MaLR 1 363 -2 294 360 12 17 chr4 152832745 152832917 -31455745 + ERVL LTR ERVL 1488 1658 -4106 583 312 84 58 chr4 152833170 152833587 -31455075 + ERVL LTR ERVL 3006 3433 -2331 2255 111 0 0 chr4 152833594 152833900 -31454762 - AluSx SINE Alu -6 306 1 786 223 88 95 chr4 152834349 152834780 -31453882 - LTR37B LTR ERV1 -3 465 38 219 184 20 20 chr4 152835079 152835128 -31453534 - MER5A DNA MER1_type 0 189 141 1921 248 99 15 chr4 152835132 152835668 -31452994 + MLT1E LTR MaLR 11 591 -2 235 240 186 101 chr4 152835669 152835798 -31452864 + MER5A DNA MER1_type 50 189 0 25 31 0 0 chr4 152836362 152836394 -31452268 + AT_rich Low_complexity Low_complexity 1 32 0 216 306 163 0 chr4 152838506 152838604 -31450058 + L2 LINE L2 3185 3298 -15 658 288 11 69 chr4 152839823 152840097 -31448565 - MIR SINE MIR 0 262 5 333 332 26 33 chr4 152840256 152840434 -31448228 - MER5A DNA MER1_type -1 188 3 231 250 0 80 chr4 152841692 152841780 -31446882 + MER5B DNA MER1_type 76 156 -22 246 194 0 0 chr4 152842373 152842435 -31446227 + CT-rich Low_complexity Low_complexity 4 65 0 1093 232 156 72 chr4 152842718 152843205 -31445457 - MER119 DNA MER1_type -54 529 2 41 58 0 0 chr4 152843346 152843415 -31445247 + AT_rich Low_complexity Low_complexity 1 69 0 287 98 49 32 chr4 152843440 152843563 -31445099 + (TA)n Simple_repeat Simple_repeat 2 126 0 297 378 17 0 chr4 152843626 152843745 -31444917 - MIR3 SINE MIR -48 160 40 473 291 45 30 chr4 152844015 152844225 -31444437 + MLT1H1 LTR MaLR 32 239 -328 622 188 68 15 chr4 152844334 152844467 -31444195 + MLT1H1 LTR MaLR 403 542 -13 237 312 52 39 chr4 152844481 152844635 -31444027 + LTR37B LTR ERV1 43 198 -270 796 234 34 26 chr4 152844675 152844944 -31443718 + LTR37B LTR ERV1 198 468 0 234 0 0 0 chr4 152845154 152845180 -31443482 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 1142 170 16 75 chr4 152847715 152847968 -31440694 + MER8 DNA MER2_type 1 238 -1 995 160 0 6 chr4 152847977 152848146 -31440516 - MER3 DNA MER1_type -41 168 1 21 71 0 0 chr4 152848203 152848245 -31440417 + AT_rich Low_complexity Low_complexity 1 42 0 468 0 0 0 chr4 152848676 152848728 -31439934 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 359 234 67 141 chr4 152848742 152849041 -31439621 + MER102b DNA MER1_type 56 332 -9 247 323 81 24 chr4 152849546 152849670 -31438992 - MARNA DNA Mariner -381 205 75 212 0 36 0 chr4 152849842 152849870 -31438792 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr4 152851775 152851796 -31436866 + GC_rich Low_complexity Low_complexity 1 21 0 235 278 14 0 chr4 152853676 152853748 -31434914 + GA-rich Low_complexity Low_complexity 1 73 0 193 358 24 24 chr4 152854253 152854418 -31434244 - L2 LINE L2 -384 2930 2766 1011 256 122 47 chr4 152854502 152854971 -31433691 - LTR33A LTR ERVL -18 505 2 2428 143 12 7 chr4 152855746 152856159 -31432503 + L1PB3 LINE L1 5737 6151 -3 182 36 0 36 chr4 152856725 152856753 -31431909 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 23 54 0 0 chr4 152859125 152859162 -31429500 + AT_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chr4 152859195 152859228 -31429434 + AT_rich Low_complexity Low_complexity 1 33 0 673 334 56 48 chr4 152860036 152860665 -31427997 + L2 LINE L2 2125 2758 -556 237 365 28 9 chr4 152860767 152860874 -31427788 + L2 LINE L2 3188 3296 -17 24 0 0 0 chr4 152862598 152862622 -31426040 + AT_rich Low_complexity Low_complexity 1 24 0 902 213 22 121 chr4 152863905 152864219 -31424443 + MLT1A1 LTR MaLR 1 283 -82 21 0 0 0 chr4 152864638 152864659 -31424003 + AT_rich Low_complexity Low_complexity 1 21 0 342 113 0 0 chr4 152865338 152865391 -31423271 - MADE1 DNA Mariner -27 53 1 393 311 10 0 chr4 152865717 152865820 -31422842 + LTR67 LTR ERVL 86 189 -368 192 333 14 0 chr4 152866497 152866569 -31422093 + L2 LINE L2 985 1057 -2257 262 261 76 43 chr4 152866898 152866990 -31421672 + MIR SINE MIR 109 203 -59 201 319 121 11 chr4 152867742 152867924 -31420738 + L2 LINE L2 1910 2111 -1203 460 320 96 32 chr4 152868345 152868626 -31420036 - HAL1 LINE L1 -867 1640 1342 424 297 33 37 chr4 152868635 152868908 -31419754 - L1MEd LINE L1 -4910 1209 938 1174 143 0 0 chr4 152869118 152869293 -31419369 - AluSg/x SINE Alu 0 310 136 3032 112 10 174 chr4 152869293 152870068 -31418594 - LTR12 LTR ERV1 -9 705 58 299 307 85 33 chr4 152870530 152870683 -31417979 + L2 LINE L2 2250 2410 -904 259 329 79 14 chr4 152870805 152870945 -31417717 - MIR SINE MIR -111 151 3 23 0 0 0 chr4 152871196 152871219 -31417443 + AT_rich Low_complexity Low_complexity 1 23 0 851 283 146 14 chr4 152871514 152872098 -31416564 - L1MEc LINE L1 -4193 2929 2269 1230 34 0 0 chr4 152872226 152872375 -31416287 + L1PA5 LINE L1 6001 6149 -5 1703 263 13 52 chr4 152873901 152874653 -31414009 - L1MEc LINE L1 -4846 2095 1373 238 218 36 0 chr4 152874678 152874733 -31413929 - L1MEc LINE L1 -5157 1266 1210 325 241 86 43 chr4 152874914 152875030 -31413632 - L1MEc LINE L1 -5482 941 821 361 298 42 12 chr4 152875448 152875616 -31413046 - L1MEc LINE L1 -6218 205 33 511 252 26 32 chr4 152875627 152875782 -31412880 - MER33 DNA MER1_type -164 160 7 1634 204 40 9 chr4 152875848 152876196 -31412466 - MLT1A1 LTR MaLR -6 359 1 23 33 0 0 chr4 152876791 152876821 -31411841 + AT_rich Low_complexity Low_complexity 1 30 0 1189 278 128 30 chr4 152877527 152878138 -31410524 - L2 LINE L2 -1434 1880 1210 413 365 76 4 chr4 152878090 152878328 -31410334 + L2 LINE L2 2489 2743 -571 * 486 366 64 64 chr4 152878354 152878805 -31409857 + L2 LINE L2 2818 3268 -4 281 254 116 138 chr4 152878881 152879070 -31409592 - MIR SINE MIR -68 194 10 2277 111 14 8 chr4 152879291 152879644 -31409018 - THE1A LTR MaLR 0 355 1 5184 90 3 6 chr4 152879644 152880336 -31408326 - THE1A-int LTR MaLR 0 1580 891 1538 119 0 41 chr4 152880346 152880589 -31408073 + AluSg/x SINE Alu 68 300 -10 31 44 0 0 chr4 152882629 152882674 -31405988 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr4 152883569 152883591 -31405071 + AT_rich Low_complexity Low_complexity 1 22 0 252 86 0 0 chr4 152883744 152883779 -31404883 + (GA)n Simple_repeat Simple_repeat 1 35 0 361 339 145 0 chr4 152883779 152883965 -31404697 + MIR SINE MIR 3 215 -47 232 214 0 0 chr4 152883965 152884007 -31404655 - Charlie6 DNA MER1_type -399 3101 3060 21 0 0 0 chr4 152884023 152884044 -31404618 + AT_rich Low_complexity Low_complexity 1 21 0 1819 152 0 0 chr4 152884931 152885220 -31403442 + L1MB1 LINE L1 5401 5689 -479 948 254 0 0 chr4 152885221 152885406 -31403256 + Tigger7 DNA MER2_type 2 186 -519 931 179 6 0 chr4 152885403 152885576 -31403086 + Tigger7 DNA MER2_type 353 526 -1961 * 15961 145 25 6 chr4 152885577 152888246 -31400416 - Tigger2 DNA MER2_type 0 2718 1 515 218 0 0 chr4 152888246 152888333 -31400329 + Tigger7 DNA MER2_type 2401 2487 0 2406 155 6 56 chr4 152888336 152888834 -31399828 + L1MB1 LINE L1 5691 6163 -5 21 0 0 0 chr4 152889457 152889478 -31399184 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 152889766 152889796 -31398866 + AT_rich Low_complexity Low_complexity 1 30 0 192 303 34 56 chr4 152889889 152889978 -31398684 + L2 LINE L2 3227 3313 0 1421 213 21 59 chr4 152890247 152890636 -31398026 - MLT1A2 LTR MaLR 0 374 1 1897 148 24 0 chr4 152890803 152891101 -31397561 + AluSx SINE Alu 1 305 -7 1124 157 10 113 chr4 152891365 152891658 -31397004 - Charlie1 DNA MER1_type -328 2433 2171 8165 181 46 53 chr4 152891662 152895140 -31393522 - L1MA5 LINE L1 -17 6985 3541 3123 213 18 57 chr4 152895135 152896101 -31392561 - L1MA5 LINE L1 -4650 2199 1232 * 587 232 8 0 chr4 152896107 152896232 -31392430 - Charlie1 DNA MER1_type -575 2186 2061 462 262 28 0 chr4 152896283 152896390 -31392272 - MLT2B1 LTR ERVL -84 436 327 242 84 60 24 chr4 152896393 152896476 -31392186 + (TAAA)n Simple_repeat Simple_repeat 2 87 0 1694 107 12 0 chr4 152896737 152896989 -31391673 - L1PA13 LINE L1 0 6163 5909 866 149 174 30 chr4 152897219 152897420 -31391242 + L1PA16 LINE L1 5937 6166 0 29 47 0 0 chr4 152897442 152897485 -31391177 + AT_rich Low_complexity Low_complexity 1 43 0 234 284 25 37 chr4 152897944 152898025 -31390637 - MLT2F LTR ERVL -539 124 45 304 277 44 29 chr4 152898124 152898261 -31390401 - L1M4 LINE L1 -2228 3918 3780 38 61 0 0 chr4 152898502 152898568 -31390094 + AT_rich Low_complexity Low_complexity 1 66 0 694 276 31 5 chr4 152898642 152898834 -31389828 - MIR SINE MIR -59 203 7 341 322 138 43 chr4 152900510 152900880 -31387782 - MLT1J LTR MaLR -8 503 99 753 299 100 17 chr4 152901029 152901390 -31387272 + MLT1I LTR MaLR 11 401 -8 732 244 102 56 chr4 152902656 152903087 -31385575 - L1M4 LINE L1 -2371 3775 3325 253 352 11 0 chr4 152903238 152903326 -31385336 + MER5B DNA MER1_type 90 178 0 529 250 58 0 chr4 152903501 152903657 -31385005 - L1ME2 LINE L1 -8 6156 5992 3093 266 84 35 chr4 152903911 152905728 -31382934 + L1MEc LINE L1 613 2517 -3879 768 188 19 94 chr4 152905758 152905971 -31382691 + AluJo SINE Alu 116 312 0 2759 335 87 38 chr4 152906190 152906809 -31381853 + MERVL LTR ERVL 1835 2423 -3062 2137 131 3 6 chr4 152906809 152907121 -31381541 - AluSx SINE Alu -1 311 1 2759 335 87 38 chr4 152907121 152909142 -31379520 + MERVL LTR ERVL 2423 4603 -882 631 268 116 35 chr4 152909299 152909497 -31379165 + MER20 DNA MER1_type 6 219 0 24 32 0 0 chr4 152910627 152910658 -31378004 + AT_rich Low_complexity Low_complexity 1 31 0 273 302 225 11 chr4 152911130 152911312 -31377350 - L2 LINE L2 -493 2821 2601 273 57 0 0 chr4 152912217 152912252 -31376410 + (TA)n Simple_repeat Simple_repeat 1 35 0 237 119 0 0 chr4 152912287 152912329 -31376333 + (TA)n Simple_repeat Simple_repeat 2 43 0 1361 225 50 86 chr4 152912330 152912748 -31375914 + MLT1E LTR MaLR 191 593 0 6039 148 30 10 chr4 152913360 152914641 -31374021 - L1MA4A LINE L1 0 6303 5003 * 12073 19 0 0 chr4 152914613 152916796 -31371866 - L1PA2 LINE L1 -2 6153 3971 336 316 88 9 chr4 152916917 152917031 -31371631 - MIR SINE MIR -120 142 20 2222 119 0 0 chr4 152917603 152917905 -31370757 - AluSq SINE Alu -11 302 1 201 345 0 23 chr4 152919270 152919357 -31369305 - MIR SINE MIR -105 103 19 237 306 7 76 chr4 152919630 152919774 -31368888 - L2 LINE L2 -7 3306 3173 2191 117 3 0 chr4 152919835 152920133 -31368529 + AluSg SINE Alu 3 301 -9 1156 246 154 48 chr4 152920449 152921013 -31367649 + MLT1E2 LTR MaLR 1 624 -2 587 301 57 55 chr4 152922736 152923030 -31365632 + HAL1b LINE L1 95 392 -956 1354 253 21 24 chr4 152923030 152923405 -31365257 - MLT1A2 LTR MaLR 0 374 1 587 301 57 55 chr4 152923405 152923598 -31365064 + HAL1b LINE L1 392 583 -765 354 261 69 31 chr4 152923780 152923910 -31364752 + HAL1b LINE L1 749 883 -465 234 133 0 0 chr4 152924684 152924729 -31363933 - LTR66 LTR ERVL -171 439 395 * 243 152 0 0 chr4 152924694 152924740 -31363922 + LTR66 LTR ERVL 394 439 -171 421 178 158 46 chr4 152925253 152925405 -31363257 + L1ME3 LINE L1 5987 6155 -7 663 255 20 25 chr4 152926525 152926721 -31361941 + MIR SINE MIR 58 252 -10 263 247 11 0 chr4 152926729 152926818 -31361844 + (CATATA)n Simple_repeat Simple_repeat 6 95 0 687 275 106 57 chr4 152926871 152927115 -31361547 + MLT1J1 LTR MaLR 1 276 -170 953 201 6 0 chr4 152927115 152927294 -31361368 + L1PB4 LINE L1 5977 6156 0 687 275 106 57 chr4 152927294 152927474 -31361188 + MLT1J1 LTR MaLR 276 446 0 344 244 0 13 chr4 152927931 152928009 -31360653 - MLT1L LTR MaLR -537 78 2 259 104 0 21 chr4 152928414 152928462 -31360200 - L1PA16 LINE L1 -2 6164 6118 5153 127 16 25 chr4 152928562 152928820 -31359842 - L1PA16 LINE L1 -83 6083 5824 2052 104 11 0 chr4 152928820 152929128 -31359534 - AluY SINE Alu 0 311 1 5153 127 16 25 chr4 152929128 152929816 -31358846 - L1PA16 LINE L1 -342 5824 5143 3142 199 13 3 chr4 152929815 152930444 -31358218 + L1PA16 LINE L1 4517 5151 -995 * 22 0 0 0 chr4 152930444 152930466 -31358196 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr4 152930891 152930934 -31357728 + AT_rich Low_complexity Low_complexity 1 43 0 1762 281 167 29 chr4 152931293 152931781 -31356881 + L2 LINE L2 1636 2055 -1259 1966 160 0 6 chr4 152931781 152932094 -31356568 - AluSx SINE Alu -1 311 1 1911 136 10 3 chr4 152932094 152932389 -31356273 - AluJb SINE Alu -15 297 1 1762 281 167 29 chr4 152932389 152932931 -31355731 + L2 LINE L2 2054 2809 -505 495 319 122 25 chr4 152932950 152933229 -31355433 + L2 LINE L2 2971 3276 -37 2200 114 3 7 chr4 152933330 152933638 -31355024 - AluSx SINE Alu -5 307 1 28 48 0 0 chr4 152933970 152934012 -31354650 + AT_rich Low_complexity Low_complexity 1 42 0 1518 176 55 30 chr4 152934057 152934386 -31354276 + THE1C LTR MaLR 1 337 -38 3843 137 118 15 chr4 152934386 152935057 -31353605 + THE1C-int LTR MaLR 841 1580 0 1682 156 56 22 chr4 152935058 152935417 -31353245 + THE1C LTR MaLR 1 371 -4 1984 166 113 14 chr4 152935941 152936374 -31352288 - LTR22 LTR ERVK -33 476 1 246 234 65 0 chr4 152937024 152937101 -31351561 + Charlie8 DNA MER1_type 308 389 -2028 2210 92 7 3 chr4 152937696 152937991 -31350671 - AluSp SINE Alu -17 296 1 207 379 17 0 chr4 152938091 152938149 -31350513 - L2 LINE L2 -86 3186 3128 799 123 20 15 chr4 152938756 152938911 -31349751 - L1MB2 LINE L1 -7 6176 6004 239 224 104 40 chr4 152939295 152939420 -31349242 + L1ME LINE L1 5787 5919 -202 280 196 11 54 chr4 152939442 152939534 -31349128 + (TATATG)n Simple_repeat Simple_repeat 2 89 0 31 0 0 0 chr4 152939745 152939776 -31348886 + AT_rich Low_complexity Low_complexity 1 31 0 298 320 82 57 chr4 152940626 152940820 -31347842 + MIR3 SINE MIR 4 202 -6 24 32 0 0 chr4 152941095 152941126 -31347536 + AT_rich Low_complexity Low_complexity 1 31 0 261 0 0 0 chr4 152941734 152941763 -31346899 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 222 219 244 0 chr4 152941917 152941999 -31346663 - MIR SINE MIR -1 261 160 206 269 65 65 chr4 152942180 152942273 -31346389 - L2 LINE L2 -8 3305 3213 385 295 119 53 chr4 152942770 152942997 -31345665 + MIR SINE MIR 8 249 -13 1961 154 0 3 chr4 152944348 152944653 -31344009 + AluJb SINE Alu 1 304 -8 479 121 0 33 chr4 152945121 152945212 -31343450 + L1MA6 LINE L1 6213 6300 0 236 328 160 35 chr4 152945235 152945604 -31343058 - L2 LINE L2 -84 3229 2815 488 294 74 37 chr4 152947308 152948059 -31340603 + L1M4 LINE L1 4635 5428 -748 433 241 62 49 chr4 152948267 152948543 -31340119 + MER113 DNA MER1_type? 145 466 -55 221 278 28 0 chr4 152948921 152948993 -31339669 + T-rich Low_complexity Low_complexity 2 75 0 22 35 0 0 chr4 152949164 152949193 -31339469 + AT_rich Low_complexity Low_complexity 1 29 0 210 229 0 0 chr4 152949660 152949730 -31338932 + (TA)n Simple_repeat Simple_repeat 2 71 0 21 57 0 0 chr4 152949970 152950005 -31338657 + AT_rich Low_complexity Low_complexity 1 35 0 2014 126 14 3 chr4 152950765 152951059 -31337603 - AluSx SINE Alu -15 297 1 1746 138 13 34 chr4 152952273 152952571 -31336091 + AluSx SINE Alu 1 292 -20 810 262 5 5 chr4 152952933 152953124 -31335538 + MER58A DNA MER1_type 31 221 -3 618 323 156 11 chr4 152953897 152954469 -31334193 - L2 LINE L2 -18 3295 2629 4626 141 54 7 chr4 152955005 152955505 -31333157 + L1PB4 LINE L1 5278 5834 -322 333 0 0 0 chr4 152955505 152955542 -31333120 + (CA)n Simple_repeat Simple_repeat 2 38 0 4626 141 54 7 chr4 152955542 152955881 -31332781 + L1PB4 LINE L1 5834 6156 0 391 186 9 62 chr4 152955858 152955971 -31332691 + L1MC5 LINE L1 6939 7045 -916 * 297 309 163 8 chr4 152957562 152957685 -31330977 + MIR SINE MIR 20 161 -101 491 266 192 10 chr4 152957804 152958007 -31330655 - MIR SINE MIR -21 241 2 436 292 113 32 chr4 152958046 152958231 -31330431 - MIR SINE MIR -18 244 45 775 282 85 77 chr4 152959143 152959934 -31328728 + L1ME LINE L1 104 900 -5170 280 228 39 39 chr4 152959938 152960065 -31328597 + L1ME LINE L1 2610 2736 -3344 512 288 111 52 chr4 152960067 152960726 -31327936 + L1MEc LINE L1 1117 1814 -4582 390 162 64 29 chr4 152960730 152960903 -31327759 + (TA)n Simple_repeat Simple_repeat 2 180 0 2858 257 89 47 chr4 152960950 152962077 -31326585 + L1MEc LINE L1 1861 2940 -3275 449 80 80 0 chr4 152962077 152962152 -31326510 + L1MA5A LINE L1 6214 6294 -3 2858 257 89 47 chr4 152962152 152962373 -31326289 + L1MEc LINE L1 2940 3150 -3065 2353 88 3 0 chr4 152962373 152962680 -31325982 + AluY SINE Alu 1 308 -3 2858 257 89 47 chr4 152962680 152962741 -31325921 + L1MEc LINE L1 3150 3207 -3008 571 64 13 0 chr4 152962741 152962819 -31325843 - MADE1 DNA Mariner 0 80 2 2858 257 89 47 chr4 152962819 152963400 -31325262 + L1MEc LINE L1 3207 3916 -2299 1520 192 60 67 chr4 152963402 152963850 -31324812 + MLT1C LTR MaLR 23 467 0 22 0 0 0 chr4 152964516 152964538 -31324124 + AT_rich Low_complexity Low_complexity 1 22 0 654 234 6 11 chr4 152964547 152964722 -31323940 + MER104 DNA MER2_type 4 177 -3 2029 100 7 27 chr4 152965340 152965640 -31323022 + AluSq SINE Alu 5 298 -15 30 27 0 0 chr4 152965740 152965777 -31322885 + AT_rich Low_complexity Low_complexity 1 37 0 283 339 72 60 chr4 152966521 152966854 -31321808 + L2 LINE L2 2638 2974 -340 865 125 59 7 chr4 152966944 152967096 -31321566 - L1MB1 LINE L1 -16 6173 6014 762 236 63 30 chr4 152967127 152967364 -31321298 - MIR SINE MIR -3 259 15 23 54 0 0 chr4 152967653 152967690 -31320972 + AT_rich Low_complexity Low_complexity 1 37 0 2296 98 0 0 chr4 152970354 152970659 -31318003 + AluSg SINE Alu 1 305 -5 340 350 15 7 chr4 152971426 152971563 -31317099 - L2 LINE L2 -1 3271 3134 465 274 68 36 chr4 152973492 152973711 -31314951 + MIR SINE MIR 1 226 -36 28 48 0 0 chr4 152973996 152974038 -31314624 + AT_rich Low_complexity Low_complexity 1 42 0 316 51 0 0 chr4 152974248 152974287 -31314375 - MLT2A2 LTR ERVL 0 453 415 342 0 115 0 chr4 152974287 152974365 -31314297 + (TA)n Simple_repeat Simple_repeat 2 88 0 252 122 0 0 chr4 152975031 152975072 -31313590 + (T)n Simple_repeat Simple_repeat 1 41 0 620 142 108 8 chr4 152975331 152975451 -31313211 - FLAM_C SINE Alu -1 132 1 268 252 68 117 chr4 152975451 152975657 -31313005 + MIR SINE MIR 61 256 -6 1011 167 37 42 chr4 152975762 152975978 -31312684 - MER20 DNA MER1_type -4 215 1 233 235 118 0 chr4 152976041 152976126 -31312536 + MER112 DNA MER1_type 65 159 -101 243 311 76 34 chr4 152976138 152976257 -31312405 + L2 LINE L2 3149 3272 0 514 163 12 35 chr4 152976502 152976674 -31311988 + (TA)n Simple_repeat Simple_repeat 1 168 0 1320 144 86 16 chr4 152977045 152977288 -31311374 - Tigger7 DNA MER2_type 0 2491 2232 2535 209 55 74 chr4 152977553 152978284 -31310378 - MLT1-int LTR MaLR -771 964 248 804 152 8 8 chr4 152978284 152978416 -31310246 - FLAM_C SINE Alu -11 132 1 273 127 109 0 chr4 152978428 152978483 -31310179 - MLT1-int LTR MaLR -1151 220 160 694 193 10 135 chr4 152978483 152978690 -31309972 + MLT1C LTR MaLR 210 467 0 321 222 17 28 chr4 152979157 152979337 -31309325 + CT-rich Low_complexity Low_complexity 2 179 0 186 191 0 0 chr4 152979612 152979654 -31309008 + G-rich Low_complexity Low_complexity 4 45 0 201 200 44 0 chr4 152979712 152979757 -31308905 + C-rich Low_complexity Low_complexity 3 49 0 1805 141 114 18 chr4 152980420 152980761 -31307901 + THE1C LTR MaLR 2 375 0 229 219 296 15 chr4 152981887 152982083 -31306579 - L1ME3A LINE L1 -10 6160 5910 451 152 14 243 chr4 152982134 152982210 -31306452 - L1MD3 LINE L1 -76 7919 7827 1535 177 3 40 chr4 152982210 152982509 -31306153 + AluJo SINE Alu 1 288 -24 451 152 14 243 chr4 152982509 152982708 -31305954 - L1MD3 LINE L1 -168 7827 7707 904 193 70 0 chr4 152982708 152982895 -31305767 - Tigger3(Golem) DNA MER2_type -99 2930 2731 803 179 0 0 chr4 152982895 152983012 -31305650 + FLAM_C SINE Alu 1 117 -16 386 195 11 69 chr4 152983053 152983140 -31305522 - Tigger3(Golem) DNA MER2_type -2947 82 1 984 179 6 0 chr4 152983141 152983297 -31305365 - MER2 DNA MER2_type -188 157 1 1212 248 84 31 chr4 152983323 152983621 -31305041 - L1ME3A LINE L1 -161 6005 5665 2313 143 8 27 chr4 152983621 152983992 -31304670 - THE1B LTR MaLR 0 364 1 1212 248 84 31 chr4 152983992 152984150 -31304512 - L1ME3A LINE L1 -501 5665 5517 562 227 20 47 chr4 152984177 152984327 -31304335 + MIR SINE MIR 47 192 -70 185 294 106 12 chr4 152984770 152984855 -31303807 + L2 LINE L2 3122 3214 -58 855 164 0 43 chr4 152985279 152985419 -31303243 + AluJo SINE Alu 3 136 -176 1741 133 16 75 chr4 152985449 152985757 -31302905 + AluSx SINE Alu 1 290 -22 792 295 72 22 chr4 152986112 152986471 -31302191 + LTR16A LTR ERVL 21 397 -53 270 311 27 87 chr4 152986474 152986657 -31302005 + L2 LINE L2 3036 3207 -65 1317 160 63 63 chr4 152986997 152987110 -31301552 + AluJo SINE Alu 1 113 -199 243 0 0 0 chr4 152987110 152987137 -31301525 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1317 160 63 63 chr4 152987137 152987292 -31301370 + AluJo SINE Alu 112 269 -43 1745 186 6 6 chr4 152987348 152987659 -31301003 + AluJo SINE Alu 1 311 -1 23 0 0 0 chr4 152987670 152987693 -31300969 + AT_rich Low_complexity Low_complexity 1 23 0 557 292 177 24 chr4 152987721 152988117 -31300545 + L1MC/D LINE L1 5263 5729 -392 881 202 71 0 chr4 152988120 152988288 -31300374 + AluJb SINE Alu 87 266 -46 507 202 0 0 chr4 152988291 152988375 -31300287 + AluJb SINE Alu 190 273 -39 710 185 0 22 chr4 152988385 152988569 -31300093 + GA-rich Low_complexity Low_complexity 1 180 0 262 275 9 37 chr4 152988571 152988680 -31299982 + L1MC/D LINE L1 5742 5847 -1961 217 268 37 0 chr4 152989173 152989255 -31299407 + L2 LINE L2 2041 2125 -1189 1839 150 7 7 chr4 152989345 152989645 -31299017 + AluJo SINE Alu 13 312 0 666 261 75 66 chr4 152989709 152990001 -31298661 + L2 LINE L2 2148 2447 -867 1351 173 129 4 chr4 152990001 152990273 -31298389 - AluSx SINE Alu -6 306 1 666 261 75 66 chr4 152990273 152990417 -31298245 + L2 LINE L2 2447 2588 -726 608 211 30 0 chr4 152990419 152990552 -31298110 - MER89 LTR ERV1 0 559 423 1817 177 0 16 chr4 152990562 152990879 -31297783 - AluJb SINE Alu 0 312 1 425 118 0 13 chr4 152990879 152990895 -31297767 - L1M4 LINE L1 -944 5202 5187 9657 62 7 11 chr4 152990895 152991284 -31297378 - L1PA6 LINE L1 0 6154 5765 2480 78 0 0 chr4 152991284 152991592 -31297070 - AluY SINE Alu -3 308 1 9657 62 7 11 chr4 152991592 152992374 -31296288 - L1PA6 LINE L1 -389 5765 4982 2443 97 0 0 chr4 152992374 152992682 -31295980 - AluY SINE Alu -3 308 1 9657 62 7 11 chr4 152992682 152993498 -31295164 - L1PA6 LINE L1 -1172 4982 4186 425 118 0 13 chr4 152993498 152993557 -31295105 - L1M4 LINE L1 -959 5187 5128 554 105 0 23 chr4 152994284 152994370 -31294292 - FLAM_A SINE Alu 0 142 59 283 233 14 14 chr4 152994380 152994453 -31294209 - MIR SINE MIR -109 153 81 185 250 43 114 chr4 152994553 152994693 -31293969 - L2 LINE L2 -214 3058 2929 228 302 82 39 chr4 152994906 152995088 -31293574 - L2 LINE L2 -465 2849 2660 350 274 24 0 chr4 152995111 152995195 -31293467 + L2 LINE L2 3186 3271 -1 244 340 58 16 chr4 152995531 152995719 -31292943 + L2 LINE L2 2511 2706 -608 2056 130 3 0 chr4 152995729 152996055 -31292607 + AluSp SINE Alu 1 327 0 494 172 32 0 chr4 152996161 152996254 -31292408 - MER5A DNA MER1_type -80 109 14 657 320 86 33 chr4 152996301 152996757 -31291905 + L2 LINE L2 2804 3283 -30 215 277 62 0 chr4 152997163 152997228 -31291434 - MIR SINE MIR -112 150 82 * 218 235 118 24 chr4 152997198 152997283 -31291379 - MIR SINE MIR -72 136 44 * 503 348 36 24 chr4 152997266 152997519 -31291143 + L2 LINE L2 3051 3306 -7 1533 194 42 10 chr4 152997561 152997850 -31290812 + AluJo SINE Alu 1 298 -14 1192 194 67 26 chr4 152997983 152998322 -31290340 + MLT1D LTR MaLR 22 429 -76 467 243 90 53 chr4 152999217 152999406 -31289256 - MER63A DNA MER1_type -5 205 10 193 273 36 0 chr4 152999406 152999461 -31289201 + L3b LINE CR1 1206 1262 -321 21 36 0 0 chr4 153000798 153000826 -31287836 + AT_rich Low_complexity Low_complexity 1 28 0 278 288 42 8 chr4 153000872 153000990 -31287672 - L1ME LINE L1 -459 5662 5541 23 33 0 0 chr4 153001274 153001304 -31287358 + AT_rich Low_complexity Low_complexity 1 30 0 1002 313 116 41 chr4 153002333 153003094 -31285568 - L3 LINE CR1 -114 1463 646 24 0 0 0 chr4 153005787 153005811 -31282851 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4 153009852 153009874 -31278788 + AT_rich Low_complexity Low_complexity 1 22 0 182 188 83 21 chr4 153011323 153011371 -31277291 + L2 LINE L2 99 149 -3165 3516 124 38 4 chr4 153014939 153015470 -31273192 + L1MC1 LINE L1 5785 6333 0 276 130 22 0 chr4 153015471 153015517 -31273145 - Charlie1 DNA MER1_type -49 2712 2666 1940 196 34 17 chr4 153015519 153015937 -31272725 - MER95 LTR ERV 0 431 7 2581 194 66 10 chr4 153015943 153016563 -31272099 - Charlie1 DNA MER1_type -97 2664 2010 33 43 0 0 chr4 153017209 153017256 -31271406 + AT_rich Low_complexity Low_complexity 1 47 0 2857 198 23 23 chr4 153017892 153018497 -31270165 - L1MD1 LINE L1 -1 6241 5637 2556 220 19 68 chr4 153018499 153019289 -31269373 - L1MDa LINE L1 -5620 920 18 805 262 100 35 chr4 153021446 153021816 -31266846 + MLT1J1 LTR MaLR 27 420 -26 513 178 68 41 chr4 153021817 153021963 -31266699 - MER69 DNA AcHobo 0 2526 2377 355 271 24 0 chr4 153022087 153022172 -31266490 - MER69 DNA AcHobo -2439 87 1 3522 156 44 17 chr4 153022559 153023195 -31265467 + MER39B LTR ERV1 1 653 0 210 143 0 0 chr4 153024415 153024450 -31264212 + (GGGA)n Simple_repeat Simple_repeat 2 36 0 396 190 43 0 chr4 153025132 153025248 -31263414 + CT-rich Low_complexity Low_complexity 4 124 0 1360 174 0 5 chr4 153025250 153025474 -31263188 - AluJb SINE Alu -5 307 85 29 47 0 0 chr4 153025585 153025628 -31263034 + AT_rich Low_complexity Low_complexity 1 43 0 2105 129 3 0 chr4 153025659 153025954 -31262708 + AluSx SINE Alu 1 296 -16 4953 103 155 0 chr4 153026081 153026796 -31261866 - LTR12 LTR ERV1 0 826 1 249 57 0 0 chr4 153027132 153027167 -31261495 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 685 289 106 36 chr4 153027530 153027998 -31260664 - L2 LINE L2 -1 3312 2764 2210 109 0 0 chr4 153028237 153028531 -31260131 + AluSg SINE Alu 3 296 -14 21 0 0 0 chr4 153028544 153028565 -31260097 + AT_rich Low_complexity Low_complexity 1 21 0 31 58 0 0 chr4 153029349 153029401 -31259261 + AT_rich Low_complexity Low_complexity 1 52 0 2014 117 48 0 chr4 153029779 153030070 -31258592 + AluSx SINE Alu 1 305 -7 949 189 11 5 chr4 153030130 153030320 -31258342 - AluJo SINE Alu -3 309 119 253 167 0 0 chr4 153030338 153030386 -31258276 - FLAM_A SINE Alu 0 133 86 729 268 28 53 chr4 153031075 153031562 -31257100 - L2 LINE L2 -115 3198 2508 456 272 48 0 chr4 153032485 153032610 -31256052 - MIR SINE MIR -84 178 48 1964 144 43 25 chr4 153033135 153033503 -31255159 + THE1C LTR MaLR 1 375 0 2212 119 0 0 chr4 153034268 153034578 -31254084 + AluSx SINE Alu 1 310 -2 22 35 0 0 chr4 153034825 153034854 -31253808 + AT_rich Low_complexity Low_complexity 1 29 0 589 275 135 18 chr4 153035049 153035278 -31253384 - MIR SINE MIR 0 262 7 30 0 0 0 chr4 153036578 153036608 -31252054 + AT_rich Low_complexity Low_complexity 1 30 0 33 25 0 0 chr4 153036697 153036737 -31251925 + AT_rich Low_complexity Low_complexity 1 40 0 236 30 30 0 chr4 153036774 153036807 -31251855 + (CA)n Simple_repeat Simple_repeat 1 34 0 453 274 106 35 chr4 153037123 153037604 -31251058 + HAL1 LINE L1 1041 1555 -952 305 327 74 43 chr4 153037664 153037826 -31250836 + HAL1 LINE L1 1631 1797 -710 1448 277 66 34 chr4 153038153 153038651 -31250011 + MLT1G LTR MaLR 77 590 0 372 287 133 14 chr4 153038651 153038794 -31249868 + MIR SINE MIR 94 253 -9 227 200 20 0 chr4 153039048 153039098 -31249564 + GA-rich Low_complexity Low_complexity 2 52 0 21 0 0 0 chr4 153039114 153039135 -31249527 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr4 153039236 153039270 -31249392 + AT_rich Low_complexity Low_complexity 1 34 0 2543 144 35 29 chr4 153039334 153039819 -31248843 - LTR22B LTR ERVK -4 488 1 21 0 0 0 chr4 153041149 153041170 -31247492 + AT_rich Low_complexity Low_complexity 1 21 0 476 266 24 0 chr4 153041587 153041711 -31246951 - LTR16A1 LTR ERVL 0 457 331 4879 61 3 16 chr4 153041727 153042346 -31246316 + SVA Other Other 775 1385 -1 438 206 11 0 chr4 153042375 153042467 -31246195 + MER81 DNA DNA 20 112 -2 232 402 36 10 chr4 153042510 153042704 -31245958 - LTR16C LTR ERVL -221 270 72 329 264 152 60 chr4 153043046 153043348 -31245314 + L1M4 LINE L1 5306 5587 -582 4304 142 16 16 chr4 153043438 153044003 -31244659 + MER50 LTR ERV1 1 568 -166 2194 58 3 17 chr4 153044003 153044298 -31244364 - AluY SINE Alu -20 291 1 4304 142 16 16 chr4 153044298 153044443 -31244219 + MER50 LTR ERV1 567 711 -23 4886 89 27 3 chr4 153044739 153045444 -31243218 - LTR30 LTR ERV1 0 722 1 367 254 109 5 chr4 153045794 153045987 -31242675 - Charlie2 DNA MER1_type 0 2862 2650 1117 239 38 12 chr4 153045987 153046326 -31242336 - Charlie2b DNA MER1_type -1322 1460 1113 469 283 38 19 chr4 153046327 153046486 -31242176 - MLT1H LTR MaLR -375 174 13 391 17 51 17 chr4 153046685 153046744 -31241918 + (TAAAA)n Simple_repeat Simple_repeat 2 62 0 2212 101 0 7 chr4 153047524 153047821 -31240841 + AluY SINE Alu 2 296 -15 6032 145 32 3 chr4 153048230 153049476 -31239186 + L1MA4A LINE L1 5015 6292 -11 3377 325 79 39 chr4 153049538 153051713 -31236949 + ERVL LTR ERVL 997 3259 -2505 13336 145 27 8 chr4 153052334 153054560 -31234102 + Tigger1 DNA MER2_type 1 2269 -149 1144 164 29 0 chr4 153054642 153054850 -31233812 + Tigger1 DNA MER2_type 2191 2404 -14 967 329 15 6 chr4 153054911 153055248 -31233414 + ERVL LTR ERVL 4056 4395 -1259 735 273 104 16 chr4 153055561 153055810 -31232852 + ERVL LTR ERVL 4851 5121 -643 571 260 73 50 chr4 153055900 153056119 -31232543 - MIR SINE MIR -10 252 29 23 86 0 0 chr4 153056224 153056282 -31232380 + AT_rich Low_complexity Low_complexity 1 58 0 368 40 20 0 chr4 153057147 153057197 -31231465 + (CA)n Simple_repeat Simple_repeat 1 51 0 279 250 24 12 chr4 153057822 153057906 -31230756 + MER112 DNA MER1_type 1 85 -175 1433 58 0 0 chr4 153058488 153058660 -31230002 + AluY SINE Alu 132 303 -8 1953 110 0 4 chr4 153059316 153059580 -31229082 + AluSx SINE Alu 46 308 -4 597 165 0 55 chr4 153063196 153063323 -31225339 - L1MC/D LINE L1 -555 5778 5659 296 356 57 17 chr4 153063663 153063840 -31224822 - MIR3 SINE MIR -7 201 18 1995 109 0 11 chr4 153064217 153064491 -31224171 - AluSg SINE Alu -12 298 28 1988 132 0 14 chr4 153065746 153066041 -31222621 - AluJb SINE Alu -21 291 1 293 268 63 71 chr4 153066224 153066351 -31222311 - L2 LINE L2 -1 3312 3187 2115 130 0 0 chr4 153067988 153068287 -31220375 - AluSx SINE Alu -13 299 1 221 312 0 52 chr4 153068307 153068384 -31220278 - MIR SINE MIR -12 250 178 443 268 16 8 chr4 153069441 153069568 -31219094 - MER94 DNA DNA -4 130 3 2167 121 0 6 chr4 153071040 153071353 -31217309 + AluY SINE Alu 1 311 0 23 0 0 0 chr4 153071532 153071555 -31217107 + AT_rich Low_complexity Low_complexity 1 23 0 1879 159 0 10 chr4 153071601 153071915 -31216747 + AluY SINE Alu 1 311 0 690 219 22 22 chr4 153072093 153072271 -31216391 + MER97c DNA MER1_type? 1 178 -912 180 125 0 0 chr4 153072318 153072350 -31216312 + (TG)n Simple_repeat Simple_repeat 1 32 0 249 342 0 0 chr4 153072627 153072709 -31215953 - MIR SINE MIR -87 121 40 27 29 0 0 chr4 153072890 153072924 -31215738 + AT_rich Low_complexity Low_complexity 1 34 0 737 91 0 10 chr4 153072924 153073023 -31215639 - L1PA8A LINE L1 -12 6119 6022 4159 131 5 0 chr4 153073024 153073675 -31214987 + L1P LINE L1 4524 5177 -969 358 288 56 0 chr4 153074603 153074728 -31213934 + MLT1J2 LTR MaLR 28 159 -291 301 224 0 102 chr4 153074720 153074818 -31213844 + MLT1J1 LTR MaLR 204 291 -155 * 285 310 168 7 chr4 153074918 153075073 -31213589 - L2 LINE L2 -557 2757 2578 548 64 0 13 chr4 153075105 153075183 -31213479 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 830 336 171 30 chr4 153075244 153076427 -31212235 - L2 LINE L2 -733 2581 1233 245 342 147 13 chr4 153077617 153077842 -31210820 - MIR SINE MIR 0 262 8 346 275 243 11 chr4 153078465 153078654 -31210008 - MIR SINE MIR -26 236 4 21 0 0 0 chr4 153079589 153079610 -31209052 + AT_rich Low_complexity Low_complexity 1 21 0 2314 88 0 13 chr4 153079915 153080221 -31208441 - AluSp SINE Alu -8 305 4 272 233 243 19 chr4 153080237 153080340 -31208322 + MIR SINE MIR 104 229 -33 1071 231 45 88 chr4 153080340 153080916 -31207746 - MER39 LTR ERV1 0 686 1 1077 212 134 52 chr4 153081235 153081698 -31206964 - MLT1D LTR MaLR 0 505 5 2272 82 0 41 chr4 153081838 153082157 -31206505 + AluSc SINE Alu 1 306 -3 312 329 27 64 chr4 153083403 153083622 -31205040 - MIR SINE MIR -3 259 49 578 321 169 29 chr4 153083638 153083921 -31204741 - L2 LINE L2 -5 3308 3066 2486 51 0 3 chr4 153083921 153084216 -31204446 + AluY SINE Alu 1 294 -17 578 321 169 29 chr4 153084216 153084261 -31204401 - L2 LINE L2 -247 3066 3029 998 202 63 123 chr4 153084261 153084676 -31203986 + MLT1B LTR MaLR 1 390 0 578 321 169 29 chr4 153084676 153085278 -31203384 - L2 LINE L2 -284 3029 2230 243 182 91 0 chr4 153085412 153085467 -31203195 + MIR SINE MIR 42 101 -161 5285 277 70 38 chr4 153086514 153088031 -31200631 - L2 LINE L2 -179 3134 1530 2427 134 83 0 chr4 153088031 153088426 -31200236 - MSTA LTR MaLR 0 428 1 5285 277 70 38 chr4 153088426 153089102 -31199560 - L2 LINE L2 -1783 1530 877 829 286 151 15 chr4 153089102 153089494 -31199168 - LTR33 LTR ERVL 0 521 77 1868 188 2 63 chr4 153089594 153090009 -31198653 + MLT1B LTR MaLR 1 390 0 287 334 183 24 chr4 153090401 153090784 -31197878 + L2 LINE L2 2046 2489 -825 24 0 0 0 chr4 153091855 153091879 -31196783 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr4 153092110 153092135 -31196527 + AT_rich Low_complexity Low_complexity 1 25 0 1891 287 177 16 chr4 153092136 153092482 -31196180 - L2 LINE L2 -1482 1832 1543 2172 107 10 3 chr4 153092482 153092790 -31195872 - AluSg SINE Alu 0 310 1 1891 287 177 16 chr4 153092790 153093371 -31195291 - L2 LINE L2 -1771 1543 756 737 148 49 0 chr4 153093371 153093493 -31195169 - AluSg/x SINE Alu -9 303 176 588 264 184 42 chr4 153093494 153093847 -31194815 - L2 LINE L2 -2547 767 365 1140 223 29 20 chr4 153094614 153094940 -31193722 - MLT1A1 LTR MaLR -1 364 1 1548 16 66 0 chr4 153095523 153095705 -31192957 + AluY SINE Alu 1 194 -117 302 345 18 0 chr4 153096270 153096380 -31192282 - L1MC/D LINE L1 -2186 5622 5511 811 244 23 33 chr4 153096726 153097093 -31191569 + L1ME LINE L1 811 1215 -5069 379 225 28 0 chr4 153097126 153097197 -31191465 + AluJ/FRAM SINE Alu 219 291 -11 258 247 0 26 chr4 153097200 153097277 -31191385 + L1ME LINE L1 1709 1783 -4613 945 206 0 0 chr4 153097307 153097529 -31191133 - AluJb SINE Alu 0 357 136 187 120 20 40 chr4 153097630 153097680 -31190982 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 2355 85 7 3 chr4 153097743 153098049 -31190613 - AluY SINE Alu -4 307 1 800 257 130 24 chr4 153098079 153098704 -31189958 + L1ME LINE L1 2076 2714 -3501 1527 249 88 27 chr4 153098767 153099325 -31189337 + L1MC4 LINE L1 7240 7831 -211 398 290 34 34 chr4 153099457 153099719 -31188943 - L1MC4a LINE L1 -1875 5933 5672 21 0 0 0 chr4 153099787 153099808 -31188854 + AT_rich Low_complexity Low_complexity 1 21 0 2256 160 61 20 chr4 153100257 153100701 -31187961 + MLT1C LTR MaLR 2 463 -4 2336 57 3 0 chr4 153101271 153101578 -31187084 - AluY SINE Alu 0 308 1 22 56 0 0 chr4 153102150 153102186 -31186476 + AT_rich Low_complexity Low_complexity 1 36 0 3396 107 60 96 chr4 153102912 153103597 -31185065 - MER4A LTR ERV1 -4 660 1 24 0 0 0 chr4 153103783 153103807 -31184855 + AT_rich Low_complexity Low_complexity 1 24 0 510 13 26 26 chr4 153104391 153104467 -31184195 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 2217 94 10 10 chr4 153105570 153105878 -31182784 - AluY SINE Alu -3 308 1 443 332 12 44 chr4 153106053 153106303 -31182359 - L3 LINE CR1 -189 1388 1147 25 0 0 0 chr4 153107325 153107350 -31181312 + AT_rich Low_complexity Low_complexity 1 25 0 239 283 225 22 chr4 153107517 153107655 -31181007 + MIR SINE MIR 84 249 -13 291 113 0 0 chr4 153110495 153110548 -31178114 + (CA)n Simple_repeat Simple_repeat 1 53 0 23 33 0 0 chr4 153110578 153110608 -31178054 + AT_rich Low_complexity Low_complexity 1 30 0 183 42 0 0 chr4 153111194 153111218 -31177444 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1373 143 23 0 chr4 153111281 153111497 -31177165 - AluJo SINE Alu -4 308 88 369 331 31 19 chr4 153111959 153112119 -31176543 - L2 LINE L2 -902 2412 2251 1017 242 56 0 chr4 153112594 153112825 -31175837 - MIR SINE MIR 0 262 19 267 309 135 0 chr4 153113508 153113634 -31175028 - MIR SINE MIR -42 220 78 25 0 0 0 chr4 153113706 153113731 -31174931 + AT_rich Low_complexity Low_complexity 1 25 0 1581 181 13 30 chr4 153114382 153114685 -31173977 - AluJo SINE Alu -14 298 1 2142 182 16 62 chr4 153114779 153115280 -31173382 - L1MB1 LINE L1 -1 6167 5690 1898 222 138 1 chr4 153115260 153115799 -31172863 + L1M3 LINE L1 4801 5412 -709 * 2343 84 0 3 chr4 153115813 153116110 -31172552 + AluY SINE Alu 1 296 -15 1996 135 24 21 chr4 153116120 153116460 -31172202 + L1M3 LINE L1 5394 5734 -434 530 276 182 70 chr4 153116989 153117362 -31171300 + MLT1J LTR MaLR 3 417 -94 351 280 34 0 chr4 153117376 153117494 -31171168 + Tigger8 DNA MER2_type 192 313 -353 423 348 26 38 chr4 153118791 153118867 -31169795 + L2 LINE L2 2747 2822 -491 2184 195 36 2 chr4 153118867 153119313 -31169349 - LOR1b LTR ERV1 0 461 1 423 348 26 38 chr4 153119313 153119526 -31169136 + L2 LINE L2 2822 3037 -276 568 341 30 19 chr4 153119956 153120223 -31168439 - L3 LINE CR1 -19 1558 1289 2189 109 0 0 chr4 153121618 153121946 -31166716 - AluSx SINE Alu 0 328 1 2208 108 0 0 chr4 153122404 153122690 -31165972 - AluSx SINE Alu -26 286 1 181 167 56 56 chr4 153123725 153123779 -31164883 - MIR3 SINE MIR -1 207 154 224 304 58 0 chr4 153123930 153123999 -31164663 - MIR3 SINE MIR -48 160 88 569 286 82 9 chr4 153125584 153125804 -31162858 + L1ME3A LINE L1 5903 6138 -32 2327 94 0 3 chr4 153125882 153126191 -31162471 + AluY SINE Alu 2 309 -2 388 272 41 12 chr4 153126205 153126374 -31162288 + L1M4 LINE L1 4494 4667 -1479 233 291 187 8 chr4 153127583 153127717 -31160945 + MIR SINE MIR 74 231 -31 1414 235 56 21 chr4 153129774 153130200 -31158462 + MLT1C LTR MaLR 1 441 -26 208 313 116 9 chr4 153130301 153130413 -31158249 + L2 LINE L2 3185 3308 -5 3461 123 9 6 chr4 153131256 153131868 -31156794 + MER4B LTR ERV1 1 779 0 588 34 34 67 chr4 153133249 153133427 -31155235 + (TA)n Simple_repeat Simple_repeat 2 173 0 529 63 32 60 chr4 153133445 153133703 -31154959 + (TA)n Simple_repeat Simple_repeat 1 250 0 293 164 0 0 chr4 153133704 153133759 -31154903 - L1M2 LINE L1 -511 5789 5735 2219 114 0 3 chr4 153133827 153134126 -31154536 + AluSg SINE Alu 1 298 -12 237 279 29 0 chr4 153134175 153134243 -31154419 + MER69 DNA AcHobo 4 73 -1153 529 176 7 49 chr4 153134380 153134522 -31154140 + MER69 DNA AcHobo 2382 2517 -9 790 117 27 19 chr4 153135659 153135843 -31152819 + (TAGA)n Simple_repeat Simple_repeat 1 182 -439 2719 89 6 0 chr4 153135843 153136204 -31152458 + THE1B LTR MaLR 2 364 0 790 117 27 19 chr4 153136204 153136276 -31152386 + (TAGA)n Simple_repeat Simple_repeat 182 621 0 199 140 40 0 chr4 153136290 153136340 -31152322 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 1611 210 30 8 chr4 153136582 153136944 -31151718 - L1PB4 LINE L1 -4 6152 5783 222 128 73 9 chr4 153136953 153137062 -31151600 + (TA)n Simple_repeat Simple_repeat 1 116 0 283 131 33 52 chr4 153137078 153137231 -31151431 + (TATAA)n Simple_repeat Simple_repeat 5 154 0 189 152 64 8 chr4 153137244 153137369 -31151293 + (TA)n Simple_repeat Simple_repeat 1 132 0 2123 91 0 0 chr4 153137496 153137771 -31150891 + AluY SINE Alu 36 310 -1 2020 153 84 18 chr4 153138029 153138467 -31150195 + MLT1C LTR MaLR 1 467 0 475 71 12 60 chr4 153138738 153138822 -31149840 - MADE1 DNA Mariner 0 80 1 2140 101 0 4 chr4 153139063 153139341 -31149321 + AluSx SINE Alu 12 288 -24 31 0 0 0 chr4 153139342 153139373 -31149289 + AT_rich Low_complexity Low_complexity 1 31 0 1517 213 5 69 chr4 153139817 153139894 -31148768 - MLT1A1 LTR MaLR 0 365 285 2358 113 0 0 chr4 153139894 153140204 -31148458 + AluSg SINE Alu 1 310 0 1517 213 5 69 chr4 153140204 153140516 -31148146 - MLT1A1 LTR MaLR -80 285 1 979 223 3 63 chr4 153141059 153141419 -31147243 + MER45C DNA AcHobo 1 391 -562 403 252 13 66 chr4 153141401 153141552 -31147110 + MER45C DNA AcHobo 710 852 -101 * 343 347 32 0 chr4 153142434 153142558 -31146104 + L2 LINE L2 3185 3312 -1 283 197 30 0 chr4 153142593 153142659 -31146003 - MLT1G LTR MaLR 0 590 523 2446 78 0 0 chr4 153143224 153143520 -31145142 + AluY SINE Alu 1 296 -15 22 0 0 0 chr4 153143521 153143543 -31145119 + AT_rich Low_complexity Low_complexity 1 22 0 379 291 109 0 chr4 153143601 153143766 -31144896 + MIR SINE MIR 65 247 -15 22 0 0 0 chr4 153144147 153144169 -31144493 + AT_rich Low_complexity Low_complexity 1 22 0 1100 274 54 89 chr4 153144188 153144922 -31143740 + L1MEc LINE L1 34 792 -5604 207 0 0 0 chr4 153144922 153144945 -31143717 + (TA)n Simple_repeat Simple_repeat 1 23 0 2190 99 0 49 chr4 153144945 153145269 -31143393 - AluSg SINE Alu -2 308 1 1100 274 54 89 chr4 153145269 153145330 -31143332 + L1MEc LINE L1 790 802 -5594 189 0 0 0 chr4 153145330 153145351 -31143311 + (A)n Simple_repeat Simple_repeat 1 21 0 420 183 26 26 chr4 153145367 153145482 -31143180 - MER53 DNA DNA -4 185 71 1392 209 37 34 chr4 153145489 153145844 -31142818 - MLT1A1 LTR MaLR 0 365 10 261 91 182 0 chr4 153145853 153145908 -31142754 - MER53 DNA DNA -123 66 2 974 230 89 62 chr4 153145910 153146337 -31142325 + L1MEc LINE L1 813 1264 -5132 2349 97 0 3 chr4 153146337 153146647 -31142015 + AluSq SINE Alu 5 313 0 974 230 89 62 chr4 153146647 153146837 -31141825 + L1MEc LINE L1 1264 1447 -4949 615 271 67 93 chr4 153147081 153147213 -31141449 + L1MEc LINE L1 1456 1590 -4806 1972 120 4 0 chr4 153147213 153147480 -31141182 + AluSx SINE Alu 29 296 -16 615 271 67 93 chr4 153147480 153147927 -31140735 + L1MEc LINE L1 1590 2020 -4376 26 93 0 0 chr4 153147953 153148028 -31140634 + AT_rich Low_complexity Low_complexity 1 75 0 22 35 0 0 chr4 153148145 153148174 -31140488 + AT_rich Low_complexity Low_complexity 1 29 0 1066 162 5 0 chr4 153148240 153148438 -31140224 + L1PBa LINE L1 2 200 -6663 9304 95 60 10 chr4 153148440 153150517 -31138145 + L1PBa LINE L1 636 2925 -3938 595 227 56 71 chr4 153200783 153201084 -31087578 + MLT1G LTR MaLR 22 356 -239 430 344 132 0 chr4 153201216 153201443 -31087219 + L2 LINE L2 638 894 -2420 1821 175 27 8 chr4 153201443 153201904 -31086758 + MLT2B1 LTR ERVL 1 515 0 275 260 10 145 chr4 153201920 153202001 -31086661 + L2 LINE L2 902 992 -2322 1867 139 99 14 chr4 153202001 153202346 -31086316 - THE1C LTR MaLR 0 375 2 275 260 10 145 chr4 153202346 153202389 -31086273 + L2 LINE L2 992 992 -2322 2531 74 0 0 chr4 153202389 153202700 -31085962 - AluY SINE Alu 0 311 1 275 260 10 145 chr4 153202700 153202774 -31085888 + L2 LINE L2 992 1074 -2240 269 232 137 0 chr4 153203147 153203234 -31085428 + MIR SINE MIR 58 154 -66 2122 100 0 0 chr4 153203455 153203776 -31084886 + AluY SINE Alu 1 321 0 369 283 178 32 chr4 153204738 153204957 -31083705 + L2 LINE L2 3043 3293 -20 189 0 0 0 chr4 153204963 153204984 -31083678 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 336 282 51 64 chr4 153205326 153205482 -31083180 + L1M LINE L1 5267 5420 -701 231 214 58 70 chr4 153206019 153206207 -31082455 - L1MEc LINE L1 -909 1581 1345 959 301 100 34 chr4 153206312 153207024 -31081638 - L1MEc LINE L1 -4916 1203 445 230 133 0 22 chr4 153208699 153208744 -31079918 + (TCCC)n Simple_repeat Simple_repeat 2 45 0 308 284 106 9 chr4 153209002 153209123 -31079539 - MER5A DNA MER1_type -2 176 47 927 308 8 8 chr4 153209133 153209393 -31079269 + MIR SINE MIR 3 262 0 1920 197 52 40 chr4 153210235 153210469 -31078193 - MLT1D-int LTR MaLR -770 601 371 2297 126 22 6 chr4 153210469 153210825 -31077837 - THE1B LTR MaLR -2 362 1 1920 197 52 40 chr4 153210825 153211067 -31077595 - MLT1D-int LTR MaLR -1000 371 119 195 114 0 0 chr4 153211068 153211103 -31077559 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 1171 56 0 0 chr4 153211103 153211245 -31077417 - L1PA5 LINE L1 -24 6130 5989 289 173 49 49 chr4 153211241 153211322 -31077340 - MLT1D-int LTR MaLR -1243 128 48 * 1876 200 27 64 chr4 153211322 153211552 -31077110 - MLT1D LTR MaLR -4 501 264 2361 92 0 9 chr4 153211552 153211868 -31076794 - AluSq SINE Alu 0 313 1 1876 200 27 64 chr4 153211868 153212156 -31076506 - MLT1D LTR MaLR -241 264 2 515 276 160 0 chr4 153212959 153213115 -31075547 - MER5A DNA MER1_type 0 189 9 8465 184 8 2 chr4 153215058 153217301 -31071361 + L1PB1 LINE L1 3535 5790 -361 242 224 0 0 chr4 153217304 153217362 -31071300 + (TA)n Simple_repeat Simple_repeat 1 58 0 2485 116 0 0 chr4 153217362 153217725 -31070937 + L1PB1 LINE L1 5782 6144 -7 1521 112 12 0 chr4 153217877 153218118 -31070544 - L1MA1 LINE L1 0 6302 6059 236 248 35 106 chr4 153218404 153218517 -31070145 + L1ME3A LINE L1 5490 5594 -527 2378 82 7 0 chr4 153218763 153219068 -31069594 - AluY SINE Alu -4 307 1 39 74 0 0 chr4 153219083 153219164 -31069498 + AT_rich Low_complexity Low_complexity 1 81 0 554 238 21 35 chr4 153220011 153220154 -31068508 + L1ME3A LINE L1 5987 6127 -43 2042 166 41 13 chr4 153220169 153220561 -31068101 + MER57A LTR ERV1 1 403 0 2340 87 13 0 chr4 153220592 153220892 -31067770 - AluSg SINE Alu -6 304 1 798 262 164 36 chr4 153222096 153222512 -31066150 - L2 LINE L2 -1 3312 2844 1395 93 6 0 chr4 153222613 153222795 -31065867 - AluSg/x SINE Alu -8 304 122 490 326 42 9 chr4 153222811 153223026 -31065636 - L2 LINE L2 -614 2700 2479 28 29 0 0 chr4 153223800 153223835 -31064827 + AT_rich Low_complexity Low_complexity 1 35 0 321 148 119 79 chr4 153224503 153224604 -31064058 + MIR3 SINE MIR 7 111 -97 1450 180 93 6 chr4 153224654 153224965 -31063697 - MER7A DNA MER2_type -9 337 2 605 274 71 5 chr4 153225703 153225900 -31062762 - MER63A DNA MER1_type 0 210 1 224 149 0 21 chr4 153226021 153226068 -31062594 + (CCCCAG)n Simple_repeat Simple_repeat 2 47 0 21 0 0 0 chr4 153226482 153226503 -31062159 + AT_rich Low_complexity Low_complexity 1 21 0 216 252 70 52 chr4 153226814 153226929 -31061733 - MIR SINE MIR -62 200 84 407 314 166 18 chr4 153227152 153227375 -31061287 - MIR SINE MIR -5 257 2 343 311 104 38 chr4 153227608 153227820 -31060842 + MIR SINE MIR 30 255 -7 224 303 34 22 chr4 153228017 153228106 -31060556 + MIR SINE MIR 95 184 -78 2221 117 0 0 chr4 153228366 153228656 -31060006 + AluSg SINE Alu 1 290 -20 1769 169 23 13 chr4 153229068 153229376 -31059286 + AluSx SINE Alu 1 311 -1 549 0 0 0 chr4 153229383 153229444 -31059218 + (GGGAA)n Simple_repeat Simple_repeat 1 61 0 22 0 0 0 chr4 153230488 153230510 -31058152 + AT_rich Low_complexity Low_complexity 1 22 0 376 285 111 51 chr4 153231413 153231648 -31057014 - L2 LINE L2 -61 3252 3004 1000 119 17 51 chr4 153232013 153232082 -31056580 + L1P3 LINE L1 3 73 -5802 2053 125 10 0 chr4 153232082 153232377 -31056285 + AluSx SINE Alu 1 298 -14 1000 119 17 51 chr4 153232377 153232483 -31056179 + L1P3 LINE L1 73 172 -5703 2629 145 5 5 chr4 153232501 153232928 -31055734 + L1P3 LINE L1 153 579 -5296 * 4610 100 10 2 chr4 153232923 153233903 -31054759 + L1PA8 LINE L1 4393 6140 -32 4610 80 5 3 chr4 153233903 153234540 -31054122 + L1PA8 LINE L1 5531 6170 -2 4610 100 10 2 chr4 153234540 153234572 -31054090 + L1PA8 LINE L1 6140 6170 -2 219 313 0 0 chr4 153234795 153234859 -31053803 + L3b LINE CR1 1294 1357 -226 201 345 0 44 chr4 153235160 153235273 -31053389 + MIR SINE MIR 84 191 -71 25 31 0 0 chr4 153235293 153235325 -31053337 + AT_rich Low_complexity Low_complexity 1 32 0 184 272 76 43 chr4 153235568 153235660 -31053002 + L2 LINE L2 3124 3218 -54 823 247 122 85 chr4 153235761 153236089 -31052573 - MLT1E LTR MaLR -253 340 1 338 329 195 27 chr4 153236182 153236814 -31051848 - L2 LINE L2 -660 2654 1917 684 112 9 2 chr4 153236832 153237056 -31051606 + AluSx SINE Alu 22 296 -14 218 247 318 0 chr4 153237626 153237711 -31050951 + L2 LINE L2 3184 3295 -18 14314 143 26 2 chr4 153237723 153240086 -31048576 + Tigger1 DNA MER2_type 1 2418 0 25 65 0 0 chr4 153240314 153240360 -31048302 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr4 153240983 153241005 -31047657 + AT_rich Low_complexity Low_complexity 1 22 0 335 276 79 20 chr4 153241170 153241322 -31047340 - L1ME LINE L1 -436 5685 5525 23 54 0 0 chr4 153243064 153243101 -31045561 + GC_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr4 153243178 153243201 -31045461 + GC_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr4 153244928 153244955 -31043707 + AT_rich Low_complexity Low_complexity 1 27 0 192 273 0 0 chr4 153247012 153247056 -31041606 + L2 LINE L2 1365 1408 -1906 569 358 123 44 chr4 153247269 153248348 -31040314 - L3 LINE CR1 -378 1199 35 239 91 0 23 chr4 153249074 153249118 -31039544 + (TG)n Simple_repeat Simple_repeat 2 44 0 274 349 41 78 chr4 153249218 153249513 -31039149 + L2 LINE L2 2969 3252 -20 2393 85 0 3 chr4 153249525 153249832 -31038830 + AluSg1 SINE Alu 1 306 -3 3405 176 11 2 chr4 153249950 153250570 -31038092 - Tigger3b DNA MER2_type -603 628 3 21 0 0 0 chr4 153251752 153251773 -31036889 + AT_rich Low_complexity Low_complexity 1 21 0 229 406 21 30 chr4 153252252 153252486 -31036176 + L2 LINE L2 2918 3149 -123 895 157 29 67 chr4 153252721 153252931 -31035731 - Charlie1 DNA MER1_type -588 2173 1972 2077 218 103 17 chr4 153252934 153253020 -31035642 - Charlie1 DNA MER1_type -2117 644 567 2149 115 0 3 chr4 153253020 153253308 -31035354 + AluSx SINE Alu 1 287 -25 2077 218 103 17 chr4 153253308 153253814 -31034848 - Charlie1 DNA MER1_type -2194 567 1 551 298 132 21 chr4 153253886 153254121 -31034541 - MIR SINE MIR -1 261 1 3139 222 111 44 chr4 153254205 153254750 -31033912 - L1MC/D LINE L1 -738 5606 5099 2246 199 14 2 chr4 153254750 153255177 -31033485 - MSTB1 LTR MaLR 0 432 1 3139 222 111 44 chr4 153255177 153255907 -31032755 - L1MC/D LINE L1 -1245 5099 4420 219 69 0 0 chr4 153255907 153255936 -31032726 + (TG)n Simple_repeat Simple_repeat 1 29 0 3139 222 111 44 chr4 153255936 153255950 -31032712 - L1MC/D LINE L1 -1924 4420 4408 2371 145 45 24 chr4 153255950 153256371 -31032291 - Tigger2a DNA MER2_type -4 430 1 456 67 0 0 chr4 153256374 153256434 -31032228 + (CA)n Simple_repeat Simple_repeat 2 61 0 3139 222 111 44 chr4 153256434 153256621 -31032041 - L1MC/D LINE L1 -1937 4407 4004 320 275 28 0 chr4 153256619 153256728 -31031934 - L1MCc LINE L1 -6289 134 23 * 2077 94 18 7 chr4 153257848 153258147 -31030515 + AluSg SINE Alu 3 304 0 270 0 0 0 chr4 153258151 153258181 -31030481 + (TG)n Simple_repeat Simple_repeat 2 31 0 262 288 0 12 chr4 153259464 153259544 -31029118 + MIR3 SINE MIR 130 208 0 454 249 52 104 chr4 153260504 153260697 -31027965 + MIR SINE MIR 23 205 -57 825 284 14 0 chr4 153260719 153260927 -31027735 - MER58B DNA MER1_type 0 341 131 228 67 0 0 chr4 153261055 153261085 -31027577 + (T)n Simple_repeat Simple_repeat 1 30 0 378 211 70 128 chr4 153261614 153261770 -31026892 + MIR SINE MIR 59 205 -57 806 282 15 0 chr4 153261792 153261998 -31026664 - MER58B DNA MER1_type 0 341 133 219 69 0 0 chr4 153262129 153262158 -31026504 + (T)n Simple_repeat Simple_repeat 1 29 0 2080 107 3 20 chr4 153262718 153263016 -31025646 + AluSx SINE Alu 1 293 -19 237 312 110 32 chr4 153263918 153264072 -31024590 - MIR SINE MIR -29 233 68 774 306 16 8 chr4 153264076 153264328 -31024334 - MIR SINE MIR -2 260 7 2340 43 0 18 chr4 153264466 153264747 -31023915 + AluY SINE Alu 1 276 -35 198 91 0 0 chr4 153264748 153264781 -31023881 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 236 89 0 44 chr4 153264810 153264855 -31023807 + (TATG)n Simple_repeat Simple_repeat 4 46 0 187 51 0 51 chr4 153265298 153265337 -31023325 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 422 280 59 0 chr4 153267329 153267447 -31021215 + L2 LINE L2 3140 3264 -8 234 278 68 62 chr4 153267648 153267810 -31020852 - L2 LINE L2 -1456 1858 1696 5902 88 2 8 chr4 153268315 153269153 -31019509 - L1PA13 LINE L1 -3 6160 5328 2194 108 3 3 chr4 153269305 153269600 -31019062 + AluSx SINE Alu 5 299 -13 23 0 0 0 chr4 153269863 153269886 -31018776 + AT_rich Low_complexity Low_complexity 1 23 0 233 353 37 29 chr4 153270278 153270414 -31018248 - L2 LINE L2 -1276 2038 1902 851 158 0 0 chr4 153270785 153270912 -31017750 + FLAM_C SINE Alu 1 127 -16 22 0 0 0 chr4 153271026 153271048 -31017614 + AT_rich Low_complexity Low_complexity 1 22 0 845 260 65 5 chr4 153271079 153271279 -31017383 + MER58A DNA MER1_type 1 212 -12 181 326 11 42 chr4 153271508 153271603 -31017059 - L3 LINE CR1 -688 889 798 491 269 127 24 chr4 153272095 153272307 -31016355 + MIR SINE MIR 21 254 -8 24 32 0 0 chr4 153273036 153273067 -31015595 + AT_rich Low_complexity Low_complexity 1 31 0 506 283 98 6 chr4 153273875 153274048 -31014614 + MIR SINE MIR 73 261 -1 276 320 152 0 chr4 153274570 153274695 -31013967 - MIR3 SINE MIR 0 208 65 333 140 14 23 chr4 153275166 153275254 -31013408 + Alu SINE Alu 248 300 -1 2093 244 74 4 chr4 153275254 153275593 -31013069 - L1M3c LINE L1 -4677 1464 1150 216 0 0 0 chr4 153275593 153275617 -31013045 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2093 244 74 4 chr4 153275617 153275923 -31012739 - L1M3c LINE L1 -4991 1150 725 1022 167 12 0 chr4 153278184 153278346 -31010316 + FRAM SINE Alu 3 166 -10 22 35 0 0 chr4 153278364 153278393 -31010269 + AT_rich Low_complexity Low_complexity 1 29 0 279 0 0 0 chr4 153278534 153278565 -31010097 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 438 256 134 12 chr4 153278565 153278729 -31009933 - L2 LINE L2 -13 3300 3117 209 151 19 0 chr4 153279483 153279536 -31009126 + (TA)n Simple_repeat Simple_repeat 1 54 0 921 160 7 0 chr4 153281236 153281386 -31007276 - FRAM SINE Alu -6 170 20 1716 154 13 27 chr4 153281412 153281710 -31006952 - AluJb SINE Alu -13 299 6 1950 109 63 0 chr4 153281800 153282084 -31006578 + AluSx SINE Alu 1 302 -10 180 0 0 0 chr4 153283179 153283199 -31005463 + (TG)n Simple_repeat Simple_repeat 2 21 0 2022 106 0 4 chr4 153283741 153284071 -31004591 + AluSx SINE Alu 14 342 0 1222 213 87 40 chr4 153284269 153284616 -31004046 - MLT1A1 LTR MaLR -2 363 1 1324 273 22 53 chr4 153285829 153286320 -31002342 + L2 LINE L2 2826 3301 -12 1268 280 138 2 chr4 153287638 153288045 -31000617 + LTR16B LTR ERVL 3 464 0 289 253 24 12 chr4 153288082 153288165 -31000497 - L2 LINE L2 -5 3267 3184 528 16 0 0 chr4 153289787 153289848 -30998814 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 238 200 20 0 chr4 153289849 153289899 -30998763 + (CA)n Simple_repeat Simple_repeat 1 51 0 1293 210 177 6 chr4 153290612 153290945 -30997717 - MSTD LTR MaLR -2 394 5 778 215 67 67 chr4 153291045 153291268 -30997394 - MER58A DNA MER1_type 0 224 2 982 265 68 67 chr4 153291436 153292041 -30996621 - L2 LINE L2 -10 3303 2705 1250 296 62 12 chr4 153293736 153293940 -30994722 - LTR33 LTR ERVL 0 521 329 189 0 0 0 chr4 153293940 153293961 -30994701 + (CAGAGA)n Simple_repeat Simple_repeat 6 26 0 1250 296 62 12 chr4 153293961 153294240 -30994422 - LTR33 LTR ERVL -192 329 14 1690 186 0 7 chr4 153294240 153294530 -30994132 + AluJo SINE Alu 3 290 -22 654 268 103 15 chr4 153295909 153296170 -30992492 - L1MEc LINE L1 -6067 329 46 400 226 45 54 chr4 153296882 153297103 -30991559 - L1ME4a LINE L1 -23 6098 5880 270 296 74 74 chr4 153297777 153297953 -30990709 - MER5A DNA MER1_type -2 187 12 1847 124 10 50 chr4 153298488 153298787 -30989875 - AluSx SINE Alu -19 293 7 242 362 47 0 chr4 153300341 153300468 -30988194 - MIR SINE MIR -98 164 32 21 0 0 0 chr4 153300525 153300546 -30988116 + AT_rich Low_complexity Low_complexity 1 21 0 661 143 0 18 chr4 153300988 153301000 -30987662 - AluSg/x SINE Alu -1 308 297 4943 84 17 17 chr4 153301000 153301358 -30987304 - L1PB1 LINE L1 -1 6150 5793 447 19 0 0 chr4 153301358 153301410 -30987252 + (TG)n Simple_repeat Simple_repeat 2 53 0 4943 84 17 17 chr4 153301410 153301774 -30986888 - L1PB1 LINE L1 -357 5794 5428 661 143 0 18 chr4 153301774 153301873 -30986789 - AluSg/x SINE Alu -12 297 199 286 262 152 18 chr4 153302115 153302279 -30986383 + L2 LINE L2 2791 2976 -338 274 266 21 32 chr4 153303583 153303677 -30984985 - MIR SINE MIR -134 128 36 2255 100 30 0 chr4 153303688 153303989 -30984673 - AluSx SINE Alu -2 310 1 228 229 0 0 chr4 153304105 153304153 -30984509 + GA-rich Low_complexity Low_complexity 4 51 0 329 226 7 66 chr4 153304312 153304449 -30984213 - L1MC5 LINE L1 -753 7208 7080 677 255 180 0 chr4 153305771 153305971 -30982691 - MIR SINE MIR 0 262 27 233 159 0 0 chr4 153306164 153306208 -30982454 - L1MC4 LINE L1 -1340 6702 6659 * 254 262 76 58 chr4 153306181 153306353 -30982309 + L1ME4a LINE L1 5936 6110 -11 2167 107 10 0 chr4 153306370 153306660 -30982002 - AluSg SINE Alu -15 295 3 23 0 0 0 chr4 153306753 153306776 -30981886 + AT_rich Low_complexity Low_complexity 1 23 0 922 209 31 0 chr4 153307034 153307230 -30981432 - MER3 DNA MER1_type -7 202 1 398 304 47 18 chr4 153307900 153308071 -30980591 - MLT1J LTR MaLR 0 511 336 2072 241 68 26 chr4 153308128 153308697 -30979965 + MLT1E LTR MaLR 1 593 0 1510 283 100 41 chr4 153308870 153309176 -30979486 + L2 LINE L2 2229 2516 -797 1347 163 46 35 chr4 153309176 153309459 -30979203 + AluJo SINE Alu 2 287 -15 1510 283 100 41 chr4 153309459 153310131 -30978531 + L2 LINE L2 2516 3259 -54 25 31 0 0 chr4 153311304 153311336 -30977326 + AT_rich Low_complexity Low_complexity 1 32 0 263 194 42 83 chr4 153311453 153311525 -30977137 + MIR SINE MIR 78 146 -62 27 92 0 0 chr4 153312059 153312135 -30976527 + AT_rich Low_complexity Low_complexity 1 76 0 1048 217 41 39 chr4 153312374 153312724 -30975938 - MER4C LTR ERV1 0 587 198 292 241 23 11 chr4 153312807 153312894 -30975768 + T-rich Low_complexity Low_complexity 2 89 0 225 292 5 68 chr4 153312850 153313042 -30975620 + CT-rich Low_complexity Low_complexity 1 180 0 * 1451 179 69 31 chr4 153315565 153315855 -30972807 + AluJb SINE Alu 1 301 -1 2361 60 0 47 chr4 153316582 153316900 -30971762 + AluY SINE Alu 1 303 -8 1936 53 0 0 chr4 153317685 153317929 -30970733 + L1PA5 LINE L1 5911 6154 0 321 280 75 9 chr4 153318603 153318710 -30969952 + L1MC4 LINE L1 6614 6727 -1315 2383 66 0 0 chr4 153318736 153319025 -30969637 - AluY SINE Alu -22 289 1 279 309 11 53 chr4 153319213 153319307 -30969355 - L2 LINE L2 0 3272 3183 610 188 18 0 chr4 153319957 153320069 -30968593 + FLAM_A SINE Alu 1 114 -19 196 313 58 95 chr4 153321238 153321481 -30967181 + L2 LINE L2 2238 2471 -843 368 124 22 34 chr4 153321696 153321785 -30966877 + GA-rich Low_complexity Low_complexity 2 89 0 421 193 241 28 chr4 153321785 153321930 -30966732 + L1PA16 LINE L1 5991 6166 0 228 378 80 16 chr4 153321949 153322137 -30966525 + MIR3 SINE MIR 2 201 -7 228 247 73 129 chr4 153322567 153322597 -30966065 + MER88 LTR ERVL 79 109 -355 1942 168 7 0 chr4 153322597 153322907 -30965755 + AluJb SINE Alu 1 312 0 1299 259 60 51 chr4 153322907 153323393 -30965269 - MER74B LTR ERVL -77 545 56 255 79 0 0 chr4 153323471 153323509 -30965153 + (TG)n Simple_repeat Simple_repeat 1 38 0 25 0 0 0 chr4 153323563 153323588 -30965074 + AT_rich Low_complexity Low_complexity 1 25 0 446 325 73 69 chr4 153324306 153324623 -30964039 - L2 LINE L2 -2 3270 2953 310 286 19 19 chr4 153324624 153324729 -30963933 - MLT1I LTR MaLR -1 408 304 570 290 48 77 chr4 153324925 153325197 -30963465 - MLT1I LTR MaLR -102 307 44 679 206 0 0 chr4 153325405 153325575 -30963087 - AluJb SINE Alu 0 325 156 455 327 73 53 chr4 153325627 153326159 -30962503 - L2 LINE L2 -625 2689 2147 1959 113 0 48 chr4 153326240 153326563 -30962099 + AluSc SINE Alu 1 309 0 289 319 27 70 chr4 153326698 153326883 -30961779 + MIR SINE MIR 36 212 -50 1636 159 81 4 chr4 153327820 153328091 -30960571 - AluJo SINE Alu -18 294 3 390 214 79 71 chr4 153328308 153328388 -30960274 - MER117 DNA MER1_type -56 141 58 2214 90 10 0 chr4 153328388 153328688 -30959974 - AluY SINE Alu -8 303 1 390 214 79 71 chr4 153328688 153328747 -30959915 - MER117 DNA MER1_type -139 58 1 772 87 0 0 chr4 153329031 153329134 -30959528 + L1PB4 LINE L1 6047 6149 -7 2171 108 27 0 chr4 153329159 153329454 -30959208 - AluSx SINE Alu -9 303 1 1969 105 38 67 chr4 153331327 153331641 -30957021 - AluSq SINE Alu -8 305 1 2542 42 0 22 chr4 153332169 153332474 -30956188 + AluY SINE Alu 1 300 -11 432 0 0 0 chr4 153332474 153332522 -30956140 + (CA)n Simple_repeat Simple_repeat 1 48 0 196 164 66 66 chr4 153333186 153333247 -30955415 - L3 LINE CR1 -532 1045 985 427 292 115 76 chr4 153333291 153333736 -30954926 + L2 LINE L2 2851 3312 -1 2782 184 137 105 chr4 153333873 153334127 -30954535 - L1MC3 LINE L1 -8 7777 7533 1655 204 10 0 chr4 153334127 153334421 -30954241 - AluJo SINE Alu -15 297 1 2782 184 137 105 chr4 153334421 153334510 -30954152 - L1MC3 LINE L1 -252 7533 7448 2027 120 4 4 chr4 153334510 153334810 -30953852 - AluSc SINE Alu 0 302 3 2782 184 137 105 chr4 153334810 153335048 -30953614 - L1MC3 LINE L1 -337 7448 7219 262 271 29 0 chr4 153335048 153335118 -30953544 - MLT1F1 LTR MaLR -451 116 45 2782 184 137 105 chr4 153335118 153335503 -30953159 - L1MC3 LINE L1 -566 7219 6706 788 207 14 0 chr4 153335707 153335852 -30952810 - FRAM SINE Alu -30 146 1 2217 109 10 10 chr4 153336689 153337001 -30951661 + AluSx SINE Alu 1 312 0 3261 249 47 46 chr4 153337111 153337641 -30951021 + L1MC3 LINE L1 3 531 -6591 195 42 0 0 chr4 153337641 153337665 -30950997 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3261 249 47 46 chr4 153337665 153338652 -30950010 + L1MC3 LINE L1 531 1515 -5607 2239 98 0 10 chr4 153338652 153338957 -30949705 + AluY SINE Alu 1 302 -9 3261 249 47 46 chr4 153338957 153339114 -30949548 + L1MC3 LINE L1 1515 1670 -5452 2162 134 0 6 chr4 153339114 153339428 -30949234 + AluSx SINE Alu 1 312 0 3261 249 47 46 chr4 153339428 153340116 -30948546 + L1MC3 LINE L1 1670 2966 -4156 14465 137 24 13 chr4 153340116 153342183 -30946479 + Tigger1 DNA MER2_type 1 2099 -319 2236 111 10 0 chr4 153342183 153342489 -30946173 + AluSc SINE Alu 1 309 0 14465 137 24 13 chr4 153342489 153342808 -30945854 + Tigger1 DNA MER2_type 2099 2413 -5 3167 246 44 68 chr4 153342812 153343649 -30945013 + L1MC3 LINE L1 2926 3781 -3160 2058 113 67 6 chr4 153343649 153343978 -30944684 + L1PB2 LINE L1 5795 6143 -8 3167 246 44 68 chr4 153343978 153344719 -30943943 + L1MC3 LINE L1 3781 4468 -2473 2067 113 14 3 chr4 153344719 153345003 -30943659 + AluSq SINE Alu 4 290 -23 3167 246 44 68 chr4 153345003 153345037 -30943625 + L1MC3 LINE L1 4468 4501 -2440 859 196 49 12 chr4 153345057 153345302 -30943360 + L1MC3 LINE L1 7532 7785 0 343 172 0 0 chr4 153345327 153345391 -30943271 + L1MC3 LINE L1 5980 6043 -898 * 3905 177 51 20 chr4 153345385 153346223 -30942439 + L1MC3 LINE L1 6278 7141 -1439 2224 94 0 0 chr4 153346323 153346609 -30942053 + AluSc SINE Alu 12 297 -12 822 182 73 5 chr4 153346611 153346803 -30941859 + L1MC3 LINE L1 8376 8580 0 26 0 0 0 chr4 153347101 153347127 -30941535 + AT_rich Low_complexity Low_complexity 1 26 0 2514 95 31 17 chr4 153347141 153347500 -30941162 - THE1B LTR MaLR 0 364 1 2834 143 56 28 chr4 153347723 153348255 -30940407 - Tigger3(Golem) DNA MER2_type 0 3029 2483 1531 153 121 65 chr4 153348248 153348587 -30940075 - MLT2B1 LTR ERVL -161 359 2 * 1502 230 60 40 chr4 153348908 153349361 -30939301 + MLT1C LTR MaLR 6 467 0 2043 198 32 0 chr4 153351048 153351453 -30937209 - MER47B DNA MER2_type 0 418 1 2056 120 6 28 chr4 153351633 153351950 -30936712 - AluSg SINE Alu 0 310 1 340 269 149 14 chr4 153352610 153352751 -30935911 - MIR SINE MIR 0 262 103 2826 216 51 47 chr4 153352781 153353365 -30935297 + LTR62 LTR ERVK 3 592 -127 2159 117 3 0 chr4 153353365 153353663 -30934999 + AluSx SINE Alu 1 299 -13 2826 216 51 47 chr4 153353663 153353788 -30934874 + LTR62 LTR ERVK 592 715 -4 21 0 0 0 chr4 153355707 153355728 -30932934 + AT_rich Low_complexity Low_complexity 1 21 0 340 280 59 60 chr4 153355824 153355946 -30932716 - L1MC4a LINE L1 -233 5888 5776 1684 146 0 4 chr4 153355946 153356207 -30932455 - AluSx SINE Alu -14 298 39 340 280 59 60 chr4 153356207 153356295 -30932367 - L1MC4a LINE L1 -345 5776 5689 204 221 58 29 chr4 153356442 153356546 -30932116 + GA-rich Low_complexity Low_complexity 1 107 0 244 310 134 14 chr4 153357949 153358091 -30930571 + MIR SINE MIR 15 173 -89 256 178 0 0 chr4 153358191 153358236 -30930426 - L2 LINE L2 -37 3276 3232 898 294 101 25 chr4 153359586 153360060 -30928602 - L2 LINE L2 -54 3259 2757 275 254 0 0 chr4 153361273 153361332 -30927330 - LTR67 LTR ERVL -62 495 437 1279 244 161 51 chr4 153362190 153362718 -30925944 - MLT1G LTR MaLR -4 586 1 378 0 0 0 chr4 153364151 153364193 -30924469 + (TCTA)n Simple_repeat Simple_repeat 3 44 0 398 265 88 27 chr4 153364291 153364438 -30924224 - MIR3 SINE MIR -30 178 23 1815 188 3 3 chr4 153364795 153365098 -30923564 + AluJo SINE Alu 1 303 -9 1226 272 65 67 chr4 153366326 153367018 -30921644 - MER21B LTR ERV1 -149 714 24 1951 137 3 0 chr4 153367441 153367773 -30920889 - AluSx SINE Alu 0 335 3 1648 303 114 29 chr4 153367773 153368835 -30919827 + L2 LINE L2 1327 2478 -836 385 287 139 44 chr4 153368825 153369076 -30919586 + L2 LINE L2 3028 3302 -11 * 21 0 0 0 chr4 153369694 153369715 -30918947 + AT_rich Low_complexity Low_complexity 1 21 0 350 273 56 7 chr4 153369720 153369863 -30918799 - L1ME4a LINE L1 -20 6101 5952 22 0 0 0 chr4 153369874 153369896 -30918766 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 153370161 153370191 -30918471 + AT_rich Low_complexity Low_complexity 1 30 0 36 53 0 0 chr4 153371576 153371633 -30917029 + AT_rich Low_complexity Low_complexity 1 57 0 418 284 93 21 chr4 153372021 153372215 -30916447 + MER63A DNA MER1_type 2 209 -1 380 284 185 10 chr4 153372237 153372550 -30916112 - L1ME4a LINE L1 -362 5802 5435 311 231 0 0 chr4 153372571 153372636 -30916026 - MIR SINE MIR -65 197 133 193 275 12 38 chr4 153373042 153373122 -30915540 + L3 LINE CR1 641 718 -859 21 0 0 0 chr4 153373600 153373621 -30915041 + AT_rich Low_complexity Low_complexity 1 21 0 375 211 83 9 chr4 153376039 153376148 -30912514 + L1MC4 LINE L1 7926 8042 0 288 149 0 0 chr4 153376915 153376962 -30911700 - L2 LINE L2 0 3313 3267 26 0 0 0 chr4 153379347 153379373 -30909289 + AT_rich Low_complexity Low_complexity 1 26 0 195 42 0 0 chr4 153379550 153379574 -30909088 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 436 178 93 25 chr4 153379995 153380113 -30908549 - Charlie7 DNA MER1_type -2457 155 30 34 42 0 0 chr4 153381188 153381236 -30907426 + AT_rich Low_complexity Low_complexity 1 48 0 1668 214 58 29 chr4 153381372 153381821 -30906841 + LTR40b LTR ERVL 1 462 0 993 289 26 13 chr4 153381833 153382141 -30906521 + HERVL40 LTR ERVL 17 328 -5202 1502 136 42 0 chr4 153382309 153382574 -30906088 - L1MA8 LINE L1 -5 6286 6011 857 272 29 0 chr4 153382605 153382811 -30905851 + HERVL40 LTR ERVL 402 613 -4917 321 286 33 0 chr4 153382813 153382904 -30905758 + HERVL40 LTR ERVL 564 657 -4873 2101 199 9 19 chr4 153382927 153383358 -30905304 + MLT1C LTR MaLR 41 467 0 2347 295 60 31 chr4 153383358 153384291 -30904371 + HERVL40 LTR ERVL 651 1610 -3920 2050 271 24 8 chr4 153384298 153384834 -30903828 + HERVL40 LTR ERVL 2529 3073 -2457 707 260 39 14 chr4 153384829 153385037 -30903625 + HERVL40 LTR ERVL 3204 3416 -2114 * 16666 192 29 18 chr4 153385022 153388173 -30900489 - ERVL-B1 LTR ERVL -2577 3187 2 1653 190 97 46 chr4 153388201 153388383 -30900279 - MLT2B1 LTR ERVL -66 454 283 1936 153 61 17 chr4 153388383 153388742 -30899920 + THE1C LTR MaLR 1 375 0 1653 190 97 46 chr4 153388742 153388991 -30899671 - MLT2B1 LTR ERVL -237 283 1 368 309 98 55 chr4 153389071 153389450 -30899212 + MER89-int LTR ERV1 6082 6476 -325 * 1189 209 35 44 chr4 153389349 153389702 -30898960 + HERVL40 LTR ERVL 2783 5529 -1 1695 232 48 5 chr4 153389714 153390107 -30898555 + LTR40b LTR ERVL 23 432 -30 389 301 114 25 chr4 153391087 153391323 -30897339 - MLT1J1 LTR MaLR -113 333 77 204 170 85 0 chr4 153391374 153391421 -30897241 - MIR SINE MIR -13 249 199 22 0 0 0 chr4 153391776 153391798 -30896864 + GC_rich Low_complexity Low_complexity 1 22 0 229 310 51 51 chr4 153392310 153392468 -30896194 + MER5A DNA MER1_type 1 158 -31 339 294 55 0 chr4 153393546 153393655 -30895007 + LTR67 LTR ERVL 440 554 -3 1631 219 48 17 chr4 153393923 153394280 -30894382 - MLT1A2 LTR MaLR -3 371 4 2026 199 101 5 chr4 153394333 153394769 -30893893 - MLT1D LTR MaLR 0 505 28 2087 151 30 33 chr4 153395406 153395771 -30892891 - THE1B LTR MaLR 0 364 1 250 291 201 30 chr4 153395771 153395905 -30892757 - MIR SINE MIR -29 233 77 307 288 6 88 chr4 153396049 153396209 -30892453 - MIR SINE MIR -50 212 66 189 0 0 0 chr4 153397083 153397104 -30891558 + (CAA)n Simple_repeat Simple_repeat 1 21 0 403 271 148 74 chr4 153397550 153397794 -30890868 - MIR SINE MIR 0 262 1 2480 56 0 3 chr4 153399275 153399578 -30889084 - AluY SINE Alu -9 302 1 4284 103 5 92 chr4 153400448 153401206 -30887456 + L1PA15 LINE L1 5469 6160 -5 570 160 30 0 chr4 153406516 153406616 -30882046 - MER58 DNA MER1_type 0 2420 2318 228 171 0 0 chr4 153406628 153406669 -30881993 - MER58 DNA MER1_type -2321 99 59 580 170 62 0 chr4 153407073 153407185 -30881477 - FLAM_C SINE Alu -14 119 1 328 296 178 6 chr4 153407575 153407744 -30880918 + MIR SINE MIR 65 262 0 209 314 70 60 chr4 153409596 153409781 -30878881 + L2 LINE L2 2872 3058 -214 1261 153 9 4 chr4 153410126 153410354 -30878308 - L1MA9 LINE L1 0 6312 6084 603 283 39 29 chr4 153410743 153410948 -30877714 - MIR SINE MIR -11 251 45 28 0 0 0 chr4 153412217 153412245 -30876417 + AT_rich Low_complexity Low_complexity 1 28 0 203 304 14 14 chr4 153412850 153412919 -30875743 + CT-rich Low_complexity Low_complexity 1 69 0 345 299 62 21 chr4 153412962 153413106 -30875556 - MIR SINE MIR -32 230 81 191 277 179 9 chr4 153414001 153414113 -30874549 - L3 LINE CR1 -829 748 618 590 259 19 120 chr4 153414598 153414923 -30873739 + L2 LINE L2 3009 3300 -13 228 67 0 0 chr4 153416242 153416272 -30872390 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1505 174 3 21 chr4 153416275 153416563 -30872099 - AluJo SINE Alu -29 283 1 256 151 20 0 chr4 153417096 153417156 -30871506 - L1MA4A LINE L1 0 6280 6107 1838 245 100 22 chr4 153417352 153417618 -30871044 + L2 LINE L2 2293 2537 -776 1665 71 0 5 chr4 153417618 153417830 -30870832 - AluY SINE Alu -100 211 1 1838 245 100 22 chr4 153417830 153418496 -30870166 + L2 LINE L2 2537 3304 -9 23 0 0 0 chr4 153418514 153418537 -30870125 + AT_rich Low_complexity Low_complexity 1 23 0 1809 153 0 13 chr4 153419136 153419437 -30869225 - AluJb SINE Alu -15 297 1 450 266 140 43 chr4 153419850 153420254 -30868408 + L1ME4a LINE L1 5378 5844 -277 1918 120 0 0 chr4 153420254 153420521 -30868141 + AluSx SINE Alu 32 298 -14 450 266 140 43 chr4 153420521 153420630 -30868032 + L1ME4a LINE L1 5844 5941 -180 2030 160 31 3 chr4 153420754 153421104 -30867558 - MER46B DNA MER2_type 0 236 2 284 262 36 12 chr4 153422902 153422986 -30865676 + MER3 DNA MER1_type 38 123 -86 921 122 7 29 chr4 153422986 153423125 -30865537 + AluJb SINE Alu 147 282 -30 276 100 0 0 chr4 153423125 153423165 -30865497 + (CATA)n Simple_repeat Simple_repeat 3 42 0 651 148 40 27 chr4 153423166 153423315 -30865347 + MER3 DNA MER1_type 2367 2517 0 206 363 145 35 chr4 153423710 153424164 -30864498 + L2 LINE L2 2471 2974 -340 30 59 0 0 chr4 153425493 153425544 -30863118 + AT_rich Low_complexity Low_complexity 1 51 0 2197 54 0 48 chr4 153425911 153426229 -30862433 - AluY SINE Alu 0 304 1 924 277 78 40 chr4 153426396 153426793 -30861869 + MLT1G1 LTR MaLR 1 412 -183 23 33 0 0 chr4 153427732 153427762 -30860900 + AT_rich Low_complexity Low_complexity 1 30 0 2078 98 6 64 chr4 153430107 153430299 -30858363 - AluSx SINE Alu -4 308 141 2407 77 0 13 chr4 153430299 153430612 -30858050 - AluY SINE Alu -2 309 1 2078 98 6 64 chr4 153430612 153430746 -30857916 - AluSx SINE Alu -171 141 1 1816 241 60 31 chr4 153431879 153432485 -30856177 - MLT1E2 LTR MaLR 0 626 7 239 362 71 14 chr4 153432525 153432666 -30855996 - MIR SINE MIR -113 149 1 189 0 0 0 chr4 153434211 153434232 -30854430 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 277 111 67 0 chr4 153434770 153434815 -30853847 - MADE1 DNA Mariner -32 48 1 1488 95 0 14 chr4 153434919 153435130 -30853532 + AluSg/x SINE Alu 105 312 0 386 311 40 61 chr4 153436201 153436447 -30852215 - L1ME LINE L1 -395 5726 5487 2223 117 0 3 chr4 153436447 153436746 -30851916 - AluSx SINE Alu -14 298 1 386 311 40 61 chr4 153436746 153436827 -30851835 - L1ME LINE L1 -634 5487 5406 214 233 0 23 chr4 153436897 153436940 -30851722 + MER91A DNA MER1_type 24 65 -131 207 308 39 0 chr4 153438136 153438214 -30850448 + MIR SINE MIR 48 128 -80 23 54 0 0 chr4 153438585 153438622 -30850040 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr4 153440323 153440345 -30848317 + AT_rich Low_complexity Low_complexity 1 22 0 2020 114 15 0 chr4 153440831 153441135 -30847527 + AluSg SINE Alu 6 313 0 21 71 0 0 chr4 153441140 153441182 -30847480 + AT_rich Low_complexity Low_complexity 1 42 0 1987 121 7 0 chr4 153442203 153442507 -30846155 - AluSx SINE Alu 0 306 1 2252 63 0 0 chr4 153447516 153447803 -30840859 + L1PA8 LINE L1 5886 6172 0 273 268 0 0 chr4 153449940 153449996 -30838666 + L2 LINE L2 3250 3305 -8 25 65 0 0 chr4 153450863 153450909 -30837753 + AT_rich Low_complexity Low_complexity 1 46 0 281 333 78 0 chr4 153451316 153451418 -30837244 - L2 LINE L2 -14 3299 3190 292 314 70 43 chr4 153451455 153451640 -30837022 + L2 LINE L2 2569 2758 -556 233 354 165 20 chr4 153451706 153452003 -30836659 + L2 LINE L2 2933 3272 0 363 268 92 20 chr4 153452532 153452685 -30835977 + MIR SINE MIR 36 199 -63 36 62 0 0 chr4 153452995 153453059 -30835603 + AT_rich Low_complexity Low_complexity 1 64 0 22 0 0 0 chr4 153453376 153453398 -30835264 + AT_rich Low_complexity Low_complexity 1 22 0 323 295 102 12 chr4 153453751 153453917 -30834745 + MIR3 SINE MIR 19 199 -9 1250 175 11 84 chr4 153453944 153454230 -30834432 + MER41C LTR ERV1 1 265 -289 * 2765 166 12 2 chr4 153454227 153454710 -30833952 + MER41B LTR ERV1 147 634 -1 1881 137 18 0 chr4 153455100 153455385 -30833277 + AluSx SINE Alu 1 290 -22 23 0 0 0 chr4 153455621 153455644 -30833018 + AT_rich Low_complexity Low_complexity 1 23 0 2293 99 0 0 chr4 153456249 153456543 -30832119 + AluSg SINE Alu 3 296 -14 625 173 87 5 chr4 153456629 153456814 -30831848 - MER33 DNA MER1_type -40 323 124 621 184 0 9 chr4 153457293 153457402 -30831260 - MER33 DNA MER1_type -216 108 1 24 77 0 0 chr4 153458336 153458388 -30830274 + AT_rich Low_complexity Low_complexity 1 52 0 685 270 59 25 chr4 153458526 153458730 -30829932 - MIR SINE MIR -44 218 8 2026 99 22 0 chr4 153459898 153460171 -30828491 + AluSc SINE Alu 21 299 -10 448 223 7 14 chr4 153461024 153461163 -30827499 + L1MC4a LINE L1 6914 7051 -757 453 296 20 13 chr4 153461696 153461848 -30826814 - L2 LINE L2 0 3313 3161 288 68 356 0 chr4 153461850 153461909 -30826753 - MADE1 DNA Mariner 0 80 1 368 280 21 21 chr4 153462406 153462549 -30826113 - L1ME LINE L1 -298 5823 5681 947 169 5 33 chr4 153462556 153462740 -30825922 + AluJo SINE Alu 120 298 -14 317 311 10 0 chr4 153462867 153462970 -30825692 + L1ME LINE L1 5636 5739 -382 219 114 0 0 chr4 153463429 153463464 -30825198 + (TC)n Simple_repeat Simple_repeat 2 36 0 272 245 104 38 chr4 153463522 153463628 -30825034 - MLT1H1 LTR MaLR -64 491 379 225 250 0 18 chr4 153463998 153464054 -30824608 + (CA)n Simple_repeat Simple_repeat 2 56 0 394 281 19 31 chr4 153464062 153464222 -30824440 - L1ME LINE L1 -532 5634 5477 2127 187 20 18 chr4 153464813 153465208 -30823454 + MER61B LTR ERV1 1 396 -29 21 0 0 0 chr4 153467090 153467111 -30821551 + AT_rich Low_complexity Low_complexity 1 21 0 2079 123 47 9 chr4 153467311 153467653 -30821009 - THE1A LTR MaLR 0 355 1 2073 120 0 17 chr4 153467886 153468186 -30820476 - AluSx SINE Alu -15 297 3 2847 149 18 21 chr4 153468197 153468219 -30820443 - L1MC2 LINE L1 -25 6319 6298 315 0 0 0 chr4 153468219 153468254 -30820408 + (CA)n Simple_repeat Simple_repeat 2 36 0 2847 149 18 21 chr4 153468254 153468746 -30819916 - L1MC2 LINE L1 -46 6298 5807 2361 140 27 60 chr4 153470119 153470377 -30818285 + Tigger2a DNA MER2_type 1 239 -2469 2245 90 40 0 chr4 153470377 153470676 -30817986 + AluY SINE Alu 1 311 0 2361 140 27 60 chr4 153470676 153470866 -30817796 + Tigger2a DNA MER2_type 239 434 0 1133 144 0 11 chr4 153471142 153471330 -30817332 + MER30B DNA MER1_type 4 189 -1 2018 132 0 35 chr4 153471358 153471668 -30816994 + AluSx SINE Alu 1 299 -13 250 244 47 35 chr4 153472424 153472510 -30816152 - L2 LINE L2 0 3272 3186 312 203 95 0 chr4 153472521 153472595 -30816067 - L1MCa LINE L1 -4351 2075 1995 1295 152 12 20 chr4 153473480 153473730 -30814932 - L1MB3 LINE L1 -2 6181 5934 2293 67 0 11 chr4 153474399 153474707 -30813955 + AluY SINE Alu 1 305 0 407 376 45 15 chr4 153475129 153475331 -30813331 + MIR SINE MIR 53 260 -2 710 252 279 24 chr4 153475474 153475811 -30812851 + L2 LINE L2 2243 2665 -649 264 307 69 65 chr4 153475821 153476098 -30812564 + L2 LINE L2 3036 3313 0 3792 176 61 8 chr4 153477521 153478303 -30810359 + LTR1B LTR ERV1 3 826 0 204 40 0 0 chr4 153478322 153478347 -30810315 + (A)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr4 153478736 153478758 -30809904 + AT_rich Low_complexity Low_complexity 1 22 0 243 229 42 62 chr4 153479183 153479279 -30809383 + MIR SINE MIR 114 207 -55 184 302 147 39 chr4 153479336 153479465 -30809197 + MIR3 SINE MIR 61 203 -5 212 264 8 0 chr4 153480646 153480771 -30807891 + (CA)n Simple_repeat Simple_repeat 2 127 0 195 129 0 0 chr4 153481862 153481893 -30806769 + (TCCA)n Simple_repeat Simple_repeat 4 34 0 357 237 85 0 chr4 153482089 153482206 -30806456 - MIR SINE MIR -56 206 77 324 0 0 0 chr4 153482258 153482294 -30806368 + (CA)n Simple_repeat Simple_repeat 2 37 0 288 183 53 23 chr4 153483305 153483436 -30805226 + T-rich Low_complexity Low_complexity 2 136 0 4200 123 3 56 chr4 153483436 153484134 -30804528 + LTR8 LTR ERV1 31 691 0 623 248 130 9 chr4 153484213 153484443 -30804219 - MIR SINE MIR -3 259 2 351 307 74 48 chr4 153485618 153485653 -30803009 - MIR SINE MIR -14 248 215 2819 136 2 7 chr4 153485653 153486080 -30802582 - MER61B LTR ERV1 0 425 1 351 307 74 48 chr4 153486080 153486275 -30802387 - MIR SINE MIR -47 215 12 512 208 195 0 chr4 153487021 153487175 -30801487 + LTR1B-int LTR ERV1 1 184 -6414 806 182 23 39 chr4 153487242 153487574 -30801088 + LTR1B-int LTR ERV1 304 671 -5927 336 122 0 0 chr4 153487934 153487983 -30800679 + LTR1B-int LTR ERV1 751 799 -5799 350 125 18 0 chr4 153488058 153488114 -30800548 + LTR1B-int LTR ERV1 836 892 -5706 * 15735 118 78 70 chr4 153488090 153490349 -30798313 + LTR1B-int LTR ERV1 503 2742 -3856 2046 148 3 3 chr4 153490349 153490659 -30798003 + AluSx SINE Alu 1 310 -2 15735 118 78 70 chr4 153490659 153493023 -30795639 + LTR1B-int LTR ERV1 2742 6584 -14 1597 150 18 32 chr4 153493102 153493435 -30795227 + MER4A LTR ERV1 261 647 -17 606 308 126 39 chr4 153495652 153496065 -30792597 + MLT1K LTR MaLR 138 586 -2 256 55 110 22 chr4 153496463 153496554 -30792108 + (TA)n Simple_repeat Simple_repeat 2 100 0 253 326 47 0 chr4 153497407 153497493 -30791169 + L2 LINE L2 2935 3024 -248 715 242 27 25 chr4 153497546 153498074 -30790588 + MLT2F LTR ERVL 1 663 0 311 311 78 28 chr4 153498074 153498254 -30790408 + MIR SINE MIR 69 257 -5 182 125 0 25 chr4 153498568 153498608 -30790054 + (TTTTA)n Simple_repeat Simple_repeat 3 41 0 270 143 0 0 chr4 153498609 153498658 -30790004 + (TA)n Simple_repeat Simple_repeat 2 50 0 2163 193 92 20 chr4 153498664 153499218 -30789444 + LTR49 LTR ERV1 2 595 0 504 264 21 0 chr4 153499413 153499553 -30789109 + MER110 LTR ERV1 318 460 -31 21 71 0 0 chr4 153499854 153499896 -30788766 + AT_rich Low_complexity Low_complexity 1 42 0 28 29 0 0 chr4 153499909 153499944 -30788718 + AT_rich Low_complexity Low_complexity 1 35 0 1823 183 0 7 chr4 153500035 153500335 -30788327 - AluJb SINE Alu -14 298 1 315 222 119 16 chr4 153500700 153500826 -30787836 + LTR37A LTR ERV1 276 414 -12 247 221 65 0 chr4 153500840 153500917 -30787745 + MER97c DNA MER1_type? 470 551 -539 1641 178 19 73 chr4 153501416 153502116 -30786546 - MER4A LTR ERV1 -3 695 1 349 161 37 12 chr4 153502249 153502330 -30786332 + MER97b DNA MER1_type? 936 1018 -35 184 292 46 77 chr4 153502440 153502505 -30786157 + MIR3 SINE MIR 1 63 -145 726 253 102 23 chr4 153502658 153502963 -30785699 + Charlie2a DNA MER1_type 173 501 -2281 634 195 89 0 chr4 153502965 153503155 -30785507 + Charlie2a DNA MER1_type 767 973 -1889 21 0 0 0 chr4 153503224 153503245 -30785417 + AT_rich Low_complexity Low_complexity 1 21 0 2260 244 122 21 chr4 153503767 153504657 -30784005 - L1M4 LINE L1 -3097 3860 2880 694 228 112 17 chr4 153504665 153504897 -30783765 - MLT1C LTR MaLR -204 263 10 333 247 0 14 chr4 153504942 153505015 -30783647 - L1M4 LINE L1 -6779 80 9 303 261 151 8 chr4 153505277 153505396 -30783266 - MIR SINE MIR -64 198 63 762 215 12 12 chr4 153505412 153505575 -30783087 + MER76 LTR ERV 14 176 -512 413 320 0 0 chr4 153505570 153505670 -30782992 - MER45 DNA AcHobo -940 100 1 * 714 186 0 8 chr4 153505974 153506092 -30782570 + FLAM_C SINE Alu 1 117 -16 450 260 119 64 chr4 153507465 153507700 -30780962 + MIR SINE MIR 15 262 0 31 44 0 0 chr4 153508050 153508095 -30780567 + AT_rich Low_complexity Low_complexity 1 45 0 2451 131 14 0 chr4 153510150 153510509 -30778153 - THE1B LTR MaLR 0 364 1 6962 119 19 7 chr4 153510509 153511520 -30777142 - THE1B-int LTR MaLR 0 1580 558 22 35 0 0 chr4 153512010 153512039 -30776623 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr4 153512521 153512549 -30776113 + AT_rich Low_complexity Low_complexity 1 28 0 193 182 23 45 chr4 153513043 153513087 -30775575 + L2 LINE L2 3193 3235 -78 1858 169 0 0 chr4 153513147 153513437 -30775225 + AluSx SINE Alu 1 290 -22 1687 286 97 34 chr4 153513507 153514487 -30774175 - L1MC4 LINE L1 -1 8041 7000 2067 130 3 0 chr4 153514546 153514839 -30773823 - THE1B LTR MaLR 0 364 71 2433 148 20 10 chr4 153514861 153515253 -30773409 - MER61B LTR ERV1 -29 396 1 12155 109 27 15 chr4 153515253 153515859 -30772803 - MER61B-int LTR ERV1 0 5217 4620 2344 118 0 0 chr4 153515859 153516172 -30772490 + AluSq SINE Alu 1 313 0 12155 109 27 15 chr4 153516172 153519661 -30769001 - MER61B-int LTR ERV1 -597 4620 959 3291 168 64 91 chr4 153519662 153519897 -30768765 - MER61B-int LTR ERV1 -4377 840 600 1863 158 0 13 chr4 153519897 153520201 -30768461 + AluSx SINE Alu 1 300 -12 3291 168 64 91 chr4 153520201 153520829 -30767833 - MER61B-int LTR ERV1 -4617 600 1 2067 168 25 14 chr4 153520840 153521204 -30767458 - MER61B LTR ERV1 -29 396 29 237 67 0 0 chr4 153521241 153521271 -30767391 - MER61B LTR ERV1 -395 30 1 * 463 87 8 13 chr4 153521271 153521335 -30767327 - THE1B LTR MaLR -329 35 1 9227 110 88 31 chr4 153521335 153522066 -30766596 - THE1B-int LTR MaLR 0 1580 892 342 0 0 0 chr4 153522066 153522104 -30766558 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 2584 17 3 0 chr4 153522104 153522403 -30766259 - L1PA3 LINE L1 -10 6145 5846 9227 110 88 31 chr4 153522403 153523165 -30765497 - THE1B-int LTR MaLR -687 893 1 2536 109 17 0 chr4 153523165 153523523 -30765139 - THE1B LTR MaLR 0 364 1 2265 105 0 0 chr4 153524132 153524426 -30764236 - AluSg SINE Alu -16 294 1 294 215 152 0 chr4 153525133 153525212 -30763450 + MLT1C LTR MaLR 24 114 -353 616 233 104 84 chr4 153525247 153525300 -30763362 + MLT1C LTR MaLR 24 74 -393 2310 101 3 0 chr4 153525300 153525607 -30763055 - AluSc SINE Alu -1 308 1 616 233 104 84 chr4 153525607 153525840 -30762822 + MLT1C LTR MaLR 74 316 -151 1825 305 160 40 chr4 153525841 153526403 -30762259 - L2 LINE L2 -1328 1986 1493 1665 199 0 16 chr4 153526403 153526720 -30761942 + AluSx SINE Alu 1 312 0 1825 305 160 40 chr4 153526720 153527216 -30761446 - L2 LINE L2 -1821 1493 801 311 192 128 0 chr4 153527223 153527301 -30761361 - MER33 DNA MER1_type -8 355 268 554 101 0 0 chr4 153527304 153527383 -30761279 - Alu SINE Alu -10 299 221 1803 142 0 0 chr4 153527383 153527644 -30761018 - AluSx SINE Alu -51 261 1 721 191 45 0 chr4 153527670 153527827 -30760835 - MER33 DNA MER1_type -142 182 19 214 275 75 62 chr4 153528569 153528649 -30760013 + MIR3 SINE MIR 4 84 -124 1379 175 110 137 chr4 153528649 153528885 -30759777 + LTR36 LTR ERV1 1 220 -391 2069 121 0 0 chr4 153528885 153529189 -30759473 + AluSg SINE Alu 1 304 0 1379 175 110 137 chr4 153529189 153529442 -30759220 + LTR36 LTR ERV1 220 478 -133 210 71 0 0 chr4 153529838 153529866 -30758796 + (TC)n Simple_repeat Simple_repeat 2 29 0 916 182 53 11 chr4 153529910 153530097 -30758565 + THE1C LTR MaLR 1 195 -180 1027 141 26 67 chr4 153530097 153530531 -30758131 - LTR12 LTR ERV1 -9 723 53 275 231 0 0 chr4 153530531 153530583 -30758079 - LTR30 LTR ERV1 -670 52 1 * 692 190 76 114 chr4 153530583 153530661 -30758001 + THE1B LTR MaLR 190 270 -94 1877 123 0 7 chr4 153530661 153530930 -30757732 + AluSx SINE Alu 1 267 -45 692 190 76 114 chr4 153530930 153531024 -30757638 + THE1B LTR MaLR 270 364 0 1986 135 32 0 chr4 153531186 153531468 -30757194 - AluSc SINE Alu -18 291 1 211 319 32 32 chr4 153532356 153532450 -30756212 - L2 LINE L2 -3 3269 3176 773 215 123 0 chr4 153532789 153532984 -30755678 - MER20 DNA MER1_type 0 219 1 421 250 139 21 chr4 153533509 153533653 -30755009 + MIR SINE MIR 65 225 -37 234 0 0 0 chr4 153534373 153534399 -30754263 + (CA)n Simple_repeat Simple_repeat 1 26 0 367 298 106 12 chr4 153535422 153535583 -30753079 - MIR SINE MIR -14 248 73 2164 73 7 17 chr4 153535613 153535901 -30752761 + AluY SINE Alu 1 285 -26 21 0 0 0 chr4 153535901 153535922 -30752740 + AT_rich Low_complexity Low_complexity 1 21 0 31 58 0 0 chr4 153536366 153536418 -30752244 + AT_rich Low_complexity Low_complexity 1 52 0 198 132 57 0 chr4 153536815 153536868 -30751794 + (TG)n Simple_repeat Simple_repeat 1 56 0 1537 266 59 31 chr4 153536873 153537487 -30751175 - L1M4 LINE L1 -2261 3885 3255 2152 96 0 0 chr4 153537487 153537796 -30750866 - AluSx SINE Alu 0 311 3 22 0 0 0 chr4 153537798 153537820 -30750842 + AT_rich Low_complexity Low_complexity 1 22 0 472 320 133 39 chr4 153537852 153538183 -30750479 - LTR16B LTR ERVL -102 362 1 276 314 59 46 chr4 153538580 153538733 -30749929 - L2 LINE L2 0 3313 3159 2544 188 2 2 chr4 153539319 153539818 -30748844 - L1M4 LINE L1 -3416 2730 2232 327 181 0 0 chr4 153540177 153540249 -30748413 + (TG)n Simple_repeat Simple_repeat 1 72 0 300 319 9 0 chr4 153540540 153540653 -30748009 - L1M4 LINE L1 -2964 3182 3069 203 333 51 8 chr4 153541132 153541249 -30747413 - L2 LINE L2 -609 2705 2584 191 323 186 6 chr4 153541221 153541388 -30747274 - L2 LINE L2 -201 3112 2916 * 969 115 71 44 chr4 153541467 153541649 -30747013 - MER30B DNA MER1_type 0 190 4 437 242 57 0 chr4 153542301 153542425 -30746237 - MIR SINE MIR -29 233 103 451 370 37 5 chr4 153543574 153543763 -30744899 + MIR3 SINE MIR 4 198 -10 277 312 50 14 chr4 153544423 153544564 -30744098 + MIR SINE MIR 46 191 -71 348 306 100 29 chr4 153544574 153544744 -30743918 - L2 LINE L2 -5 3308 3127 201 322 99 35 chr4 153544985 153545156 -30743506 - L3 LINE CR1 -300 1277 1096 3154 175 16 29 chr4 153546160 153546807 -30741855 - L1MD1 LINE L1 -2 6240 5603 24 32 0 0 chr4 153546881 153546912 -30741750 + AT_rich Low_complexity Low_complexity 1 31 0 2067 128 3 0 chr4 153548853 153549149 -30739513 - AluSg SINE Alu -13 297 1 981 162 0 0 chr4 153549365 153549542 -30739120 + AluSg/x SINE Alu 130 306 0 1662 193 152 6 chr4 153549559 153549922 -30738740 + LTR36 LTR ERV1 196 611 0 330 236 146 24 chr4 153549923 153550046 -30738616 + MIR SINE MIR 81 218 -44 2346 183 13 11 chr4 153550314 153550778 -30737884 + MER4C LTR ERV1 1 465 0 3744 128 53 2 chr4 153551120 153551724 -30736938 - MER41B LTR ERV1 0 635 1 243 0 0 0 chr4 153551831 153551858 -30736804 + (TTTTA)n Simple_repeat Simple_repeat 1 27 0 23 33 0 0 chr4 153552651 153552681 -30735981 + AT_rich Low_complexity Low_complexity 1 30 0 306 254 42 76 chr4 153552773 153552891 -30735771 + MIR SINE MIR 32 145 -63 21 57 0 0 chr4 153553124 153553159 -30735503 + AT_rich Low_complexity Low_complexity 1 35 0 187 279 200 7 chr4 153553921 153554061 -30734601 + L2 LINE L2 2970 3136 -177 5024 177 22 39 chr4 153554081 153555171 -30733491 - MER11C LTR ERVK 0 1071 1 2855 89 0 5 chr4 153555211 153555603 -30733059 - L1PA7 LINE L1 0 6154 5765 31209 73 66 0 chr4 153555605 153560672 -30727990 + L1PA5 LINE L1 740 6152 -2 2856 13 0 0 chr4 153560763 153561073 -30727589 - AluYb8 SINE Alu -8 310 1 3607 118 57 36 chr4 153561361 153562455 -30726207 - MER11A LTR ERVK 0 1236 1 268 254 14 0 chr4 153562563 153562634 -30726028 + MER116 DNA Mariner 7 78 -2 22 0 0 0 chr4 153562660 153562682 -30725980 + AT_rich Low_complexity Low_complexity 1 22 0 37 69 0 0 chr4 153562747 153562819 -30725843 + AT_rich Low_complexity Low_complexity 1 72 0 21 36 0 0 chr4 153562857 153562885 -30725777 + AT_rich Low_complexity Low_complexity 1 28 0 34 55 0 0 chr4 153563039 153563094 -30725568 + AT_rich Low_complexity Low_complexity 1 55 0 285 268 24 41 chr4 153563722 153563845 -30724817 - LTR16C LTR ERVL 0 491 371 838 168 0 0 chr4 153564724 153564855 -30723807 + FLAM_C SINE Alu 3 133 0 348 307 66 30 chr4 153565658 153565824 -30722838 - MIR3 SINE MIR -5 203 32 455 195 0 11 chr4 153565970 153566057 -30722605 - MER97a DNA MER1_type? -677 217 132 1481 135 0 9 chr4 153566066 153566319 -30722343 - AluSg/x SINE Alu 0 320 70 593 319 44 17 chr4 153569298 153569534 -30719128 + MIR SINE MIR 25 262 0 190 318 11 45 chr4 153569827 153569915 -30718747 - L2 LINE L2 0 3272 3188 184 267 83 17 chr4 153570100 153570160 -30718502 - MIR SINE MIR -64 144 81 370 329 14 14 chr4 153571422 153571565 -30717097 + GA-rich Low_complexity Low_complexity 3 145 0 23 33 0 0 chr4 153572442 153572472 -30716190 + AT_rich Low_complexity Low_complexity 1 30 0 474 125 0 0 chr4 153573085 153573165 -30715497 + (TCTCC)n Simple_repeat Simple_repeat 2 81 0 250 189 0 27 chr4 153573266 153573340 -30715322 + CT-rich Low_complexity Low_complexity 2 73 0 21 57 0 0 chr4 153574627 153574662 -30714000 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr4 153574975 153575007 -30713655 + AT_rich Low_complexity Low_complexity 1 32 0 609 327 10 10 chr4 153575465 153575673 -30712989 + MIR SINE MIR 12 219 -43 1222 334 75 42 chr4 153575745 153576631 -30712031 + L2 LINE L2 1901 2815 -499 276 375 108 0 chr4 153576702 153576822 -30711840 + L2 LINE L2 2931 3063 -250 23 33 0 0 chr4 153576989 153577019 -30711643 + AT_rich Low_complexity Low_complexity 1 30 0 210 256 0 0 chr4 153578168 153578211 -30710451 + L2 LINE L2 2773 2815 -499 2459 35 0 3 chr4 153579497 153579782 -30708880 - AluY SINE Alu -9 302 19 315 0 59 20 chr4 153580288 153580339 -30708323 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 332 316 73 58 chr4 153580464 153580670 -30707992 - MIR SINE MIR -34 228 20 911 204 68 26 chr4 153580967 153581231 -30707431 - ORSL DNA AcHobo 0 275 1 212 256 64 0 chr4 153582052 153582130 -30706532 - MIR SINE MIR -7 255 173 380 331 16 16 chr4 153582506 153582633 -30706029 - MIR SINE MIR -116 146 20 21 36 0 0 chr4 153583698 153583726 -30704936 + AT_rich Low_complexity Low_complexity 1 28 0 368 262 93 84 chr4 153584608 153584822 -30703840 + MIR SINE MIR 6 221 -41 1753 166 83 26 chr4 153584865 153585387 -30703275 - MLT2A2 LTR ERVL 0 554 1 670 113 0 0 chr4 153585388 153585494 -30703168 - HERVL-A2 LTR ERVL -8 5646 5541 217 122 73 0 chr4 153588058 153588099 -30700563 + (CAAA)n Simple_repeat Simple_repeat 3 46 0 2354 70 0 20 chr4 153589852 153590151 -30698511 + AluY SINE Alu 1 293 -18 3530 102 4 8 chr4 153591243 153591754 -30696908 + MER9 LTR ERVK 3 511 0 929 276 53 50 chr4 153592199 153592615 -30696047 - MLT1J LTR MaLR -94 417 1 236 62 0 78 chr4 153594162 153594226 -30694436 + (TTA)n Simple_repeat Simple_repeat 3 61 0 265 345 12 12 chr4 153594653 153594737 -30693925 + MIR SINE MIR 6 89 -173 535 253 65 12 chr4 153595016 153595186 -30693476 + LTR16C LTR ERVL 248 426 -65 250 320 13 0 chr4 153595194 153595269 -30693393 + L2 LINE L2 2351 2426 -888 2750 66 9 0 chr4 153595525 153595875 -30692787 + THE1A LTR MaLR 1 353 -2 11225 93 28 3 chr4 153595875 153597417 -30691245 + THE1A-int LTR MaLR 1 1580 0 2705 71 8 3 chr4 153597417 153597770 -30690892 + THE1A LTR MaLR 1 355 0 1146 277 88 31 chr4 153597779 153598234 -30690428 + L2 LINE L2 2833 3313 0 33 85 0 0 chr4 153599476 153599558 -30689104 + AT_rich Low_complexity Low_complexity 1 82 0 1857 178 0 3 chr4 153600043 153600352 -30688310 - AluJb SINE Alu -4 308 1 22 0 0 0 chr4 153600363 153600385 -30688277 + AT_rich Low_complexity Low_complexity 1 22 0 381 293 160 13 chr4 153600979 153601081 -30687581 + MIR3 SINE MIR 34 166 -42 1866 119 6 102 chr4 153601081 153601425 -30687237 + AluSx SINE Alu 1 311 -1 381 293 160 13 chr4 153601425 153601472 -30687190 + MIR3 SINE MIR 166 205 -3 2381 83 0 0 chr4 153603009 153603298 -30685364 + AluSg SINE Alu 11 299 -11 1992 154 0 56 chr4 153604731 153605088 -30683574 + MER1B DNA MER1_type 1 337 0 25 65 0 0 chr4 153605239 153605285 -30683377 + AT_rich Low_complexity Low_complexity 1 46 0 602 129 8 83 chr4 153606002 153606134 -30682528 + MER1B DNA MER1_type 217 338 -1 34 55 0 0 chr4 153606488 153606543 -30682119 + AT_rich Low_complexity Low_complexity 1 55 0 42 0 0 0 chr4 153607209 153607251 -30681411 + AT_rich Low_complexity Low_complexity 1 42 0 198 0 0 0 chr4 153608206 153608228 -30680434 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 1359 145 38 0 chr4 153608315 153608550 -30680112 - AluJb SINE Alu -68 244 1 775 205 60 0 chr4 153608770 153608936 -30679726 - MER45A DNA AcHobo -1 177 2 369 256 0 107 chr4 153609449 153609570 -30679092 - L2 LINE L2 -11 3302 3195 931 287 81 79 chr4 153609573 153609744 -30678918 - L2 LINE L2 0 3313 3144 1904 154 43 14 chr4 153609744 153610095 -30678567 - MER46B DNA MER2_type 0 236 1 931 287 81 79 chr4 153610095 153610432 -30678230 - L2 LINE L2 -169 3144 2804 1036 221 132 92 chr4 153610627 153611148 -30677514 - MLT1F1 LTR MaLR 0 567 1 2245 110 7 3 chr4 153611362 153611709 -30676953 - AluSc SINE Alu 0 348 1 3804 80 54 0 chr4 153611709 153612248 -30676414 + L1PB2 LINE L1 5582 6149 -2 370 316 144 16 chr4 153614380 153614567 -30674095 - MIR SINE MIR -50 212 2 287 121 93 0 chr4 153615873 153616013 -30672649 + (TA)n Simple_repeat Simple_repeat 2 154 0 1711 185 0 17 chr4 153616013 153616305 -30672357 - AluSx SINE Alu -25 287 1 479 333 19 9 chr4 153616441 153616657 -30672005 - Tigger8 DNA MER2_type -425 241 24 333 277 32 11 chr4 153618391 153618485 -30670177 - MER5B DNA MER1_type 0 178 83 191 345 0 24 chr4 153618538 153618622 -30670040 + L2 LINE L2 2810 2891 -423 323 288 75 71 chr4 153618712 153618924 -30669738 - MIR SINE MIR 0 262 50 464 298 258 4 chr4 153618962 153619214 -30669448 + L2 LINE L2 2998 3313 0 304 261 70 28 chr4 153619527 153619669 -30668993 + MLT1L LTR MaLR 153 300 -315 703 269 35 10 chr4 153619757 153619954 -30668708 + MIR SINE MIR 6 207 -55 375 263 53 30 chr4 153619952 153620085 -30668577 + MIR SINE MIR 122 257 -5 * 983 177 18 0 chr4 153620260 153620424 -30668238 - FRAM SINE Alu -9 167 1 2162 117 0 0 chr4 153621991 153622282 -30666380 - AluSc SINE Alu -18 291 1 23 86 0 0 chr4 153622287 153622345 -30666317 + AT_rich Low_complexity Low_complexity 1 58 0 266 317 70 8 chr4 153622542 153622785 -30665877 + L1MEd LINE L1 977 1234 -4885 607 356 20 8 chr4 153622889 153623142 -30665520 + MLT1I LTR MaLR 91 346 -63 417 227 31 0 chr4 153623191 153623288 -30665374 + MER20 DNA MER1_type 1 100 -119 24 32 0 0 chr4 153623957 153623988 -30664674 + AT_rich Low_complexity Low_complexity 1 31 0 953 190 0 0 chr4 153624453 153624611 -30664051 - FRAM SINE Alu -18 158 1 210 71 0 0 chr4 153624897 153624925 -30663737 + (TAA)n Simple_repeat Simple_repeat 3 30 0 239 307 22 51 chr4 153624930 153625067 -30663595 + MER77 LTR ERV1 55 187 -418 758 259 72 67 chr4 153625131 153625598 -30663064 + MER77 LTR ERV1 196 704 -4 680 285 88 58 chr4 153625882 153626349 -30662313 - LTR16C LTR ERVL -5 486 6 526 302 25 6 chr4 153626717 153626876 -30661786 + LTR16A LTR ERVL 240 401 -49 1583 181 127 25 chr4 153627134 153627575 -30661087 + LTR48 LTR ERV1 1 486 -301 410 219 89 0 chr4 153627598 153627721 -30660941 + LTR48 LTR ERV1 614 747 -40 24 103 0 0 chr4 153627829 153627916 -30660746 + AT_rich Low_complexity Low_complexity 1 87 0 2054 137 7 0 chr4 153628073 153628379 -30660283 - AluSx SINE Alu -4 308 1 3227 156 15 80 chr4 153628536 153629275 -30659387 - LTR8 LTR ERV1 0 691 1 449 99 56 0 chr4 153830103 153830174 -30458488 - MADE1 DNA Mariner -5 75 1 264 298 149 18 chr4 153830225 153830393 -30458269 + L2 LINE L2 2300 2489 -825 310 401 58 11 chr4 153830429 153830788 -30457874 + L2 LINE L2 2599 2974 -340 22 94 0 0 chr4 153832172 153832236 -30456426 + AT_rich Low_complexity Low_complexity 1 64 0 215 79 26 0 chr4 153833404 153833442 -30455220 + (TC)n Simple_repeat Simple_repeat 2 40 0 23 0 0 0 chr4 153833903 153833926 -30454736 + AT_rich Low_complexity Low_complexity 1 23 0 36 102 0 0 chr4 153833987 153834114 -30454548 + AT_rich Low_complexity Low_complexity 1 127 0 295 314 26 21 chr4 153834410 153834601 -30454061 - L1MC4a LINE L1 -1898 5910 5719 22 0 0 0 chr4 153834692 153834714 -30453948 + AT_rich Low_complexity Low_complexity 1 22 0 306 323 32 19 chr4 153835512 153835667 -30452995 - L1MC4a LINE L1 -1417 4729 4573 331 313 72 30 chr4 153836019 153836185 -30452477 + MIR SINE MIR 14 186 -76 436 275 17 0 chr4 153837046 153837166 -30451496 + MER94 DNA DNA 12 133 -1 27 0 0 0 chr4 153838719 153838746 -30449916 + AT_rich Low_complexity Low_complexity 1 27 0 684 261 63 19 chr4 153839553 153839821 -30448841 + L1M4c LINE L1 1593 1872 -4512 1190 223 128 12 chr4 153839843 153840162 -30448500 + MLT1A1 LTR MaLR 10 365 0 3532 231 60 88 chr4 153840166 153841563 -30447099 + MLT1A1-int LTR MaLR 5 1362 -9 1849 179 40 9 chr4 153841579 153841925 -30446737 + MLT1A1 LTR MaLR 9 365 0 1707 177 3 10 chr4 153842052 153842340 -30446322 + AluJo SINE Alu 2 287 -25 237 40 120 60 chr4 153842400 153842450 -30446212 - L1ME4a LINE L1 0 6121 6069 2155 90 0 7 chr4 153843000 153843288 -30445374 - AluSc SINE Alu -19 290 5 494 282 41 18 chr4 153843846 153844016 -30444646 - MER63B DNA MER1_type -241 195 22 558 313 166 31 chr4 153844050 153844466 -30444196 + LTR33A LTR ERVL 2 473 -50 302 267 138 53 chr4 153844500 153844725 -30443937 - LTR41 LTR ERVL -20 753 510 740 233 42 14 chr4 153845025 153845240 -30443422 - LTR41 LTR ERVL -552 221 1 197 267 13 40 chr4 153845535 153845610 -30443052 - L2 LINE L2 -6 3266 3194 360 0 0 0 chr4 153845698 153845738 -30442924 + (ATG)n Simple_repeat Simple_repeat 3 42 0 348 305 95 46 chr4 153845798 153846060 -30442602 - L2 LINE L2 -232 3040 2771 283 266 193 18 chr4 153846272 153846381 -30442281 + MLT1A1 LTR MaLR 4 131 -411 1085 249 0 107 chr4 153846383 153846721 -30441941 + MLT1F1 LTR MaLR 172 473 -94 427 270 20 0 chr4 153847862 153847962 -30440700 + MER58B DNA MER1_type 240 341 0 818 338 63 68 chr4 153848901 153849951 -30438711 + L2 LINE L2 2261 3313 0 919 250 25 17 chr4 153850508 153850744 -30437918 - MIR SINE MIR -22 240 3 1012 241 4 37 chr4 153851418 153851663 -30436999 - MER8 DNA MER2_type -1 238 2 714 271 24 12 chr4 153851779 153852026 -30436636 - L1M4 LINE L1 -2129 4017 3768 272 163 0 0 chr4 153852017 153852066 -30436596 + L1MC4 LINE L1 6655 6703 -1339 * 254 229 16 0 chr4 153852066 153852127 -30436535 + (TA)n Simple_repeat Simple_repeat 2 63 0 536 239 112 10 chr4 153852127 153852324 -30436338 - L1M4 LINE L1 -2373 3773 3557 274 284 39 0 chr4 153852334 153852436 -30436226 - L1M4 LINE L1 -2670 3476 3371 * 2710 178 13 12 chr4 153852430 153852562 -30436100 - L1M1 LINE L1 -508 5792 5662 2447 54 3 3 chr4 153852562 153852858 -30435804 - AluY SINE Alu -15 296 1 2710 178 13 12 chr4 153852858 153853564 -30435098 - L1M1 LINE L1 -638 5662 4853 7298 119 2 51 chr4 153853708 153854905 -30433757 - THE1C-int LTR MaLR -438 1142 4 1897 138 43 32 chr4 153854910 153855279 -30433383 - THE1C LTR MaLR -2 373 1 547 266 151 33 chr4 153855279 153855550 -30433112 - L2 LINE L2 -758 2556 2254 22 0 0 0 chr4 153855705 153855727 -30432935 + AT_rich Low_complexity Low_complexity 1 22 0 433 178 141 0 chr4 153855933 153856068 -30432594 - MER69 DNA AcHobo -37 2489 2336 2216 276 74 57 chr4 153856118 153857216 -30431446 - MER69 DNA AcHobo -1399 1127 12 21 0 0 0 chr4 153857843 153857864 -30430798 + AT_rich Low_complexity Low_complexity 1 21 0 2088 135 0 0 chr4 153857879 153858175 -30430487 - AluSx SINE Alu -16 296 1 2376 74 0 0 chr4 153858491 153858790 -30429872 + AluY SINE Alu 1 299 -12 531 244 0 15 chr4 153859247 153859378 -30429284 + L1PA15 LINE L1 4178 4306 -1840 260 213 0 0 chr4 153859396 153859457 -30429205 + T-rich Low_complexity Low_complexity 1 61 0 3615 173 30 28 chr4 153859459 153859478 -30429184 + L1PA15 LINE L1 4296 4313 -1852 2186 146 13 16 chr4 153859478 153859854 -30428808 - THE1C LTR MaLR 0 375 1 3615 173 30 28 chr4 153859854 153861106 -30427556 + L1PA15 LINE L1 4308 6160 0 3615 132 2 5 chr4 153861106 153861673 -30426989 + L1PA15 LINE L1 5601 6165 0 1347 117 0 0 chr4 153861836 153862024 -30426638 - MER4B LTR ERV1 -42 568 381 361 96 19 0 chr4 153862109 153862161 -30426501 - MER4A LTR ERV1 -351 313 261 457 116 116 0 chr4 153862161 153862247 -30426415 - MER4A LTR ERV1 -566 98 3 399 337 59 59 chr4 153862276 153862433 -30426229 - L2 LINE L2 -1617 1697 1541 2188 101 0 3 chr4 153862433 153862731 -30425931 - AluSc SINE Alu -8 301 5 399 337 59 59 chr4 153862731 153862979 -30425683 - L2 LINE L2 -1772 1542 1292 26 30 0 0 chr4 153863940 153863973 -30424689 + AT_rich Low_complexity Low_complexity 1 33 0 563 271 107 47 chr4 153864278 153864679 -30423983 - MER57B LTR ERV1 -7 427 1 22 0 0 0 chr4 153865116 153865138 -30423524 + AT_rich Low_complexity Low_complexity 1 22 0 2359 157 41 10 chr4 153866010 153866425 -30422237 + MSTA LTR MaLR 1 428 0 9033 181 17 2 chr4 153866425 153868053 -30420609 + MSTA-int LTR MaLR 1 1651 0 2312 132 60 12 chr4 153868053 153868455 -30420207 + MSTA LTR MaLR 1 421 -7 350 391 84 25 chr4 153868455 153868944 -30419718 + L2 LINE L2 2159 2676 -638 242 241 84 12 chr4 153871680 153871763 -30416899 - MER103 DNA DNA -75 91 3 254 243 14 0 chr4 153873933 153874003 -30414659 + GA-rich Low_complexity Low_complexity 2 72 0 2133 48 26 4 chr4 153874811 153875081 -30413581 + AluY SINE Alu 36 311 0 1633 126 30 4 chr4 153875749 153876018 -30412644 + AluY SINE Alu 36 311 0 2447 76 0 0 chr4 153877405 153877708 -30410954 + AluY SINE Alu 1 303 -8 198 191 0 0 chr4 153878915 153878962 -30409700 + (TG)n Simple_repeat Simple_repeat 2 48 0 25 31 0 0 chr4 153879656 153879688 -30408974 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 153880007 153880028 -30408634 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 153880325 153880354 -30408308 + AT_rich Low_complexity Low_complexity 1 29 0 2152 124 0 0 chr4 153880506 153880812 -30407850 - AluSx SINE Alu -6 306 1 253 297 103 11 chr4 153880835 153881010 -30407652 - L1ME LINE L1 -374 5747 5557 26 50 0 0 chr4 153881103 153881143 -30407519 + AT_rich Low_complexity Low_complexity 1 40 0 3698 72 4 4 chr4 153881192 153881690 -30406972 - L1PA7 LINE L1 -3 6151 5654 2954 69 34 0 chr4 153881690 153882150 -30406512 + L1PA7 LINE L1 5188 5661 -493 3962 154 81 19 chr4 153882176 153883007 -30405655 - L1MA8 LINE L1 -4 7706 6825 576 213 14 7 chr4 153882997 153883138 -30405524 - L1MA8 LINE L1 -1463 6102 5961 * 4282 214 46 8 chr4 153883242 153885192 -30403470 - L1MA8 LINE L1 -3124 4441 2415 1881 141 57 49 chr4 153885192 153885496 -30403166 - LTR9 LTR ERV1 -236 376 67 387 60 0 0 chr4 153885496 153885546 -30403116 + (CA)n Simple_repeat Simple_repeat 1 50 0 1881 141 57 49 chr4 153885546 153885610 -30403052 - LTR9 LTR ERV1 -545 67 5 257 208 89 30 chr4 153885618 153885719 -30402943 - L1M4 LINE L1 -1635 4511 4405 679 341 85 0 chr4 153886052 153886418 -30402244 - LTR16B LTR ERVL 0 464 68 1999 126 3 22 chr4 153886449 153886766 -30401896 - AluSq SINE Alu -2 311 1 1713 167 56 14 chr4 153887214 153887574 -30401088 + THE1C LTR MaLR 1 375 0 972 261 55 42 chr4 153887663 153887970 -30400692 - MLT1E1 LTR MaLR -20 634 324 1167 289 122 34 chr4 153888176 153888816 -30399846 - HERV16 LTR ERVL -3828 1168 473 1933 155 7 0 chr4 153889219 153889523 -30399139 - AluJb SINE Alu -6 306 1 1013 283 17 39 chr4 153889559 153889916 -30398746 - LTR16B LTR ERVL 0 464 116 1262 211 4 11 chr4 153890048 153890323 -30398339 - L1 LINE L1 -1204 4942 4670 538 217 0 0 chr4 153890323 153890414 -30398248 + L1PB4 LINE L1 6046 6151 -5 2051 102 7 33 chr4 153891062 153891366 -30397296 - AluSx SINE Alu -16 296 1 29 0 0 0 chr4 153892157 153892186 -30396476 + AT_rich Low_complexity Low_complexity 1 29 0 340 369 22 63 chr4 153893040 153893172 -30395490 + L1MEd LINE L1 374 491 -5628 4296 199 46 26 chr4 153893172 153894192 -30394470 - MER45B DNA AcHobo 0 1040 1 340 369 22 63 chr4 153894192 153894327 -30394335 + L1MEd LINE L1 491 630 -5489 630 254 94 47 chr4 153894459 153894778 -30393884 - L1ME3A LINE L1 -12 6158 5825 2134 173 6 6 chr4 153894862 153895226 -30393436 - MLT1A1 LTR MaLR 0 365 2 617 256 147 16 chr4 153895232 153895619 -30393043 - L1ME3A LINE L1 -459 5711 5265 733 217 21 0 chr4 153895620 153895763 -30392899 - Tigger5 DNA MER2_type -3 2320 2175 1994 161 59 32 chr4 153895763 153896167 -30392495 + MSTC LTR MaLR 1 415 -13 889 122 0 0 chr4 153896172 153896303 -30392359 - Tigger5 DNA MER2_type -141 2182 2052 1575 150 78 70 chr4 153896408 153896688 -30391974 - MLT1B LTR MaLR 0 390 105 2200 101 7 0 chr4 153896688 153896986 -30391676 - AluSg SINE Alu -10 300 1 1575 150 78 70 chr4 153896986 153897092 -30391570 - MLT1B LTR MaLR -285 105 1 2377 225 53 11 chr4 153897272 153897841 -30390821 - MLT1E LTR MaLR 0 593 1 1240 272 131 10 chr4 153898397 153898898 -30389764 + MLT1F1 LTR MaLR 1 553 -14 287 319 0 11 chr4 153899121 153899215 -30389447 - MLT1J1 LTR MaLR -283 163 71 216 330 47 19 chr4 153899891 153899997 -30388665 + L2 LINE L2 3159 3267 -5 509 271 26 86 chr4 153900832 153901047 -30387615 - MIR SINE MIR -55 207 9 27 81 0 0 chr4 153902282 153902344 -30386318 + AT_rich Low_complexity Low_complexity 1 62 0 228 284 14 128 chr4 153904923 153905064 -30383598 - MIR3 SINE MIR -15 193 69 36 0 0 0 chr4 153905111 153905147 -30383515 + AT_rich Low_complexity Low_complexity 1 36 0 254 261 84 7 chr4 153905505 153905647 -30383015 - L1MEc LINE L1 -4658 1738 1586 1685 216 72 70 chr4 153905647 153906148 -30382514 + MLT1D LTR MaLR 1 502 -3 640 301 76 22 chr4 153906174 153906636 -30382026 - L1MEc LINE L1 -4842 1554 1068 2933 204 74 105 chr4 153906672 153907199 -30381463 - L1MC3 LINE L1 -55 7730 7188 235 352 0 0 chr4 153907199 153907290 -30381372 - MLT1F1 LTR MaLR -442 125 35 2933 204 74 105 chr4 153907290 153907812 -30380850 - L1MC3 LINE L1 -597 7188 6627 345 236 47 38 chr4 153907813 153907919 -30380743 - MLT1B LTR MaLR -2 388 282 636 131 0 10 chr4 153907921 153908020 -30380642 + MER4A LTR ERV1 1 98 -566 1636 126 19 78 chr4 153908020 153908386 -30380276 + MER4A LTR ERV1 261 663 -1 864 199 52 68 chr4 153908395 153908646 -30380016 - MLT1B LTR MaLR -115 275 29 2346 271 71 46 chr4 153908777 153909601 -30379061 - L1MEc LINE L1 -5352 1044 189 2044 142 0 16 chr4 153909601 153909917 -30378745 - AluSx SINE Alu -1 311 1 2346 271 71 46 chr4 153909917 153910090 -30378572 - L1MEc LINE L1 -6207 189 22 250 404 73 11 chr4 153910238 153910513 -30378149 + L2 LINE L2 1710 2001 -1313 23 0 0 0 chr4 153910587 153910610 -30378052 + AT_rich Low_complexity Low_complexity 1 23 0 1856 126 83 23 chr4 153911000 153911349 -30377313 + THE1C LTR MaLR 1 370 -5 4683 110 17 15 chr4 153911349 153912401 -30376261 - L1PA10 LINE L1 -227 5941 4895 1149 124 31 21 chr4 153912401 153912620 -30376042 + L1PA10 LINE L1 5967 6168 0 2256 153 5 16 chr4 153912666 153913045 -30375617 - THE1C LTR MaLR 0 375 1 366 241 43 21 chr4 153914150 153914291 -30374371 + L1ME2 LINE L1 5898 6041 -123 320 235 104 9 chr4 153916531 153916646 -30372016 - L1ME4a LINE L1 -1 6120 5995 188 340 0 0 chr4 153916692 153916742 -30371920 + MIR SINE MIR 213 262 0 6095 189 31 11 chr4 153917042 153917163 -30371499 - L1PA16 LINE L1 -16 6150 6033 2105 124 0 3 chr4 153917163 153917462 -30371200 - AluSx SINE Alu -14 298 1 6095 189 31 11 chr4 153917462 153918732 -30369930 - L1PA16 LINE L1 -133 6033 4698 213 39 0 0 chr4 153918732 153918758 -30369904 + (TAATG)n Simple_repeat Simple_repeat 1 26 0 6095 189 31 11 chr4 153918758 153919461 -30369201 - L1PA16 LINE L1 -1468 4698 4011 30 27 0 0 chr4 153919707 153919744 -30368918 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr4 153919978 153920007 -30368655 + AT_rich Low_complexity Low_complexity 1 29 0 1709 177 38 91 chr4 153920155 153920550 -30368112 - MLT1A1 LTR MaLR 0 365 1 1211 75 0 0 chr4 153920749 153920909 -30367753 - AluY SINE Alu -18 293 134 2306 79 0 31 chr4 153921304 153921622 -30367040 + AluY SINE Alu 1 308 -3 5099 45 2 0 chr4 153922936 153923562 -30365100 + L1PA5 LINE L1 5524 6150 -4 4659 154 0 8 chr4 153923567 153924315 -30364347 + THE1-int LTR MaLR 458 1199 -381 22 0 0 0 chr4 153925720 153925742 -30362920 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr4 153926003 153926044 -30362618 + AT_rich Low_complexity Low_complexity 1 41 0 210 37 0 0 chr4 153926414 153926441 -30362221 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr4 153926521 153926543 -30362119 + AT_rich Low_complexity Low_complexity 1 22 0 3026 137 82 24 chr4 153926924 153927463 -30361199 - MER41B LTR ERV1 -65 570 1 774 200 0 82 chr4 153927463 153927658 -30361004 - L1M4b LINE L1 -6676 183 5 224 299 178 0 chr4 153927933 153928040 -30360622 + MIR SINE MIR 3 128 -134 321 118 132 29 chr4 153928043 153928111 -30360551 - MADE1 DNA Mariner -5 75 1 39 80 0 0 chr4 153929650 153929738 -30358924 + AT_rich Low_complexity Low_complexity 1 88 0 2184 100 17 0 chr4 153930992 153931282 -30357380 + AluSp SINE Alu 2 296 -17 184 236 83 28 chr4 153932097 153932169 -30356493 - MIR3 SINE MIR -43 165 90 1712 149 10 55 chr4 153932452 153932760 -30355902 - AluJo SINE Alu -18 294 1 347 300 180 0 chr4 153933374 153933524 -30355138 + MIR SINE MIR 76 252 -10 4380 178 133 11 chr4 153934132 153936296 -30352366 - L1PA16 LINE L1 -146 6020 3516 3229 253 26 24 chr4 153936316 153937342 -30351320 - L1PA16 LINE L1 -3411 2735 1708 2222 116 0 3 chr4 153937921 153938232 -30350430 - AluSx SINE Alu -2 310 1 525 264 58 11 chr4 153938950 153939124 -30349538 - MIR SINE MIR -23 239 58 621 315 108 20 chr4 153939158 153939567 -30349095 - L2 LINE L2 -1143 2171 1727 400 291 128 4 chr4 153939615 153939845 -30348817 - MLT1C LTR MaLR -21 484 192 282 206 49 29 chr4 153939845 153939947 -30348715 + L1MA8 LINE L1 6073 6176 -115 2093 116 10 13 chr4 153940066 153940377 -30348285 + AluSx SINE Alu 1 310 -2 1866 57 16 12 chr4 153940451 153940697 -30347965 + L1PA7 LINE L1 5906 6152 -2 200 86 29 0 chr4 153940794 153940829 -30347833 + (CA)n Simple_repeat Simple_repeat 2 37 0 24 0 0 0 chr4 153940973 153940997 -30347665 + AT_rich Low_complexity Low_complexity 1 24 0 1815 143 36 0 chr4 153941030 153941331 -30347331 - AluSx SINE Alu 0 312 1 23 0 0 0 chr4 153941448 153941471 -30347191 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr4 153942046 153942066 -30346596 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 188 180 0 20 chr4 153942888 153942938 -30345724 + CT-rich Low_complexity Low_complexity 2 50 0 275 375 57 0 chr4 153942949 153943141 -30345521 + L2 LINE L2 2212 2414 -900 191 250 0 0 chr4 153943346 153943390 -30345272 + MER5B DNA MER1_type 1 44 -134 228 214 0 0 chr4 153944331 153944373 -30344289 + 5S rRNA rRNA 1 42 -79 25 65 0 0 chr4 153944455 153944501 -30344161 + AT_rich Low_complexity Low_complexity 1 46 0 188 216 20 0 chr4 153944556 153944607 -30344055 + (TA)n Simple_repeat Simple_repeat 1 52 0 897 80 80 0 chr4 153944649 153944774 -30343888 - MER85 DNA T2_type -4 135 1 2502 58 3 0 chr4 153944866 153945176 -30343486 + AluY SINE Alu 1 311 0 406 141 200 0 chr4 153945220 153945305 -30343357 - MLT2C1 LTR ERVL -90 307 206 290 288 8 40 chr4 153945321 153945446 -30343216 + CT-rich Low_complexity Low_complexity 5 125 0 2053 122 3 0 chr4 153946254 153946542 -30342120 - AluSp SINE Alu -24 289 1 219 69 0 0 chr4 153947526 153947555 -30341107 + (CA)n Simple_repeat Simple_repeat 2 30 0 255 176 54 0 chr4 153948021 153948095 -30340567 + A-rich Low_complexity Low_complexity 4 81 0 37 62 0 0 chr4 153948205 153948270 -30340392 + AT_rich Low_complexity Low_complexity 1 65 0 1948 231 82 7 chr4 153948287 153948738 -30339924 - MLT1D LTR MaLR 0 505 21 241 285 15 102 chr4 153949074 153949211 -30339451 + LTR33 LTR ERVL 1 125 -396 319 268 113 30 chr4 153949323 153949491 -30339171 + LTR33 LTR ERVL 328 509 -12 2299 109 3 3 chr4 153950600 153950912 -30337750 + AluSx SINE Alu 1 312 0 395 117 0 0 chr4 153951560 153951620 -30337042 + Alu SINE Alu 236 295 -7 23 0 0 0 chr4 153951625 153951648 -30337014 + AT_rich Low_complexity Low_complexity 1 23 0 574 270 174 26 chr4 153951960 153952230 -30336432 - MLT1H LTR MaLR -227 322 13 6165 204 35 8 chr4 153953309 153954421 -30334241 - L1 LINE L1 -1933 4213 3049 1748 81 0 4 chr4 153954421 153954657 -30334005 - L1PA7 LINE L1 -2 6152 5918 6165 204 35 8 chr4 153954657 153955042 -30333620 - L1 LINE L1 -3097 3049 2676 1098 135 17 0 chr4 153955032 153955210 -30333452 + L1MA9 LINE L1 5796 5976 -336 * 480 117 58 0 chr4 153956795 153956898 -30331764 + Charlie5 DNA MER1_type 2409 2517 -95 42093 38 23 2 chr4 153956916 153962942 -30325720 - L1PA3 LINE L1 0 6155 3 9705 157 51 14 chr4 153964099 153965854 -30322808 - Tigger1 DNA MER2_type -589 1829 10 400 343 124 14 chr4 153966103 153966386 -30322276 - MLT1J LTR MaLR -197 314 1 1005 266 55 33 chr4 153966417 153966816 -30321846 - MLT1H1 LTR MaLR -2 553 146 2326 245 49 20 chr4 153967677 153968435 -30320227 - L1MC4a LINE L1 -2 7806 7027 1676 176 147 24 chr4 153968458 153968839 -30319823 - MSTA LTR MaLR 0 428 1 9736 137 6 35 chr4 153968839 153970465 -30318197 - MSTA-int LTR MaLR 0 1580 3 582 194 142 26 chr4 153970467 153970622 -30318040 - MSTA LTR MaLR 0 428 256 1880 188 87 10 chr4 153970633 153971022 -30317640 + MER61C LTR ERV1 16 434 0 1307 173 98 12 chr4 153971022 153971275 -30317387 - MSTA LTR MaLR -153 275 1 346 306 26 87 chr4 153972809 153972895 -30315767 - MIR SINE MIR 0 262 172 786 151 0 43 chr4 153972895 153973068 -30315594 - FLAM_A SINE Alu 0 133 1 346 306 26 87 chr4 153973068 153973210 -30315452 - MIR SINE MIR -90 172 48 322 292 64 52 chr4 153973854 153974121 -30314541 + MERVL LTR ERVL 5067 5336 -149 386 309 98 35 chr4 153975075 153975360 -30313302 + MLT1I LTR MaLR 107 409 0 2649 179 99 88 chr4 153977147 153977773 -30310889 - L1MA10 LINE L1 0 6334 5683 2330 183 0 20 chr4 153977773 153978215 -30310447 + Tigger2a DNA MER2_type 2 434 0 2649 179 99 88 chr4 153978215 153978753 -30309909 - L1MA10 LINE L1 -651 5683 5153 623 190 0 0 chr4 153978857 153978978 -30309684 - L1MD3 LINE L1 -14 7981 7861 313 200 29 8 chr4 153978951 153979046 -30309616 - L1M4 LINE L1 -618 5556 5457 * 507 187 0 28 chr4 153979062 153979169 -30309493 - L1MC4 LINE L1 -476 7566 7463 272 111 0 111 chr4 153979176 153979266 -30309396 - L1MD3 LINE L1 -146 7849 7770 410 154 0 0 chr4 153979266 153979331 -30309331 + Alu SINE Alu 235 299 -13 291 370 51 0 chr4 153979490 153979628 -30309034 + MIR SINE MIR 3 147 -115 212 252 259 65 chr4 153979672 153979811 -30308851 + MIR SINE MIR 32 197 -65 679 227 57 34 chr4 153979817 153979993 -30308669 - MLT1D LTR MaLR -120 385 206 1402 247 29 73 chr4 153980691 153981287 -30307375 - MLT2B3 LTR ERVL -8 534 1 24 0 0 0 chr4 153981352 153981376 -30307286 + AT_rich Low_complexity Low_complexity 1 24 0 30 59 0 0 chr4 153981718 153981769 -30306893 + AT_rich Low_complexity Low_complexity 1 51 0 848 254 91 46 chr4 153982064 153982415 -30306247 - L2 LINE L2 -4 3309 2943 426 336 0 0 chr4 153982526 153982648 -30306014 + L2 LINE L2 3180 3301 -12 283 271 143 64 chr4 153982847 153983113 -30305549 - MLT1H LTR MaLR -259 290 4 425 286 60 0 chr4 153983586 153983719 -30304943 - L2 LINE L2 -4 3309 3169 2280 137 55 24 chr4 153985094 153985509 -30303153 + MSTC LTR MaLR 1 428 0 2085 255 111 79 chr4 153986601 153987163 -30301499 + L1MC4 LINE L1 6520 7062 -980 538 39 26 0 chr4 153987163 153987240 -30301422 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 2085 255 111 79 chr4 153987240 153988150 -30300512 + L1MC4 LINE L1 7062 8040 -2 265 379 56 15 chr4 153988340 153988538 -30300124 + MIR SINE MIR 30 235 -27 1700 169 18 39 chr4 153988717 153989048 -30299614 + Tigger1 DNA MER2_type 2094 2417 -1 27 0 0 0 chr4 153989220 153989247 -30299415 + AT_rich Low_complexity Low_complexity 1 27 0 277 216 0 0 chr4 153989338 153989389 -30299273 + AluJ/monomer SINE Alu 239 289 -12 776 260 6 6 chr4 153989914 153990087 -30298575 + AluJo SINE Alu 120 292 -20 230 267 133 0 chr4 153991130 153991220 -30297442 + L2 LINE L2 3192 3293 -20 2185 77 0 55 chr4 153991229 153991541 -30297121 + AluSc SINE Alu 1 295 -14 22 35 0 0 chr4 153991601 153991630 -30297032 + AT_rich Low_complexity Low_complexity 1 29 0 954 236 34 0 chr4 153991683 153991891 -30296771 - ERVL LTR ERVL -1207 4557 4343 * 1764 281 59 19 chr4 153991883 153992506 -30296156 - ERVL LTR ERVL -2243 3411 2764 6006 169 15 21 chr4 153992518 153994778 -30293884 - L1PB1 LINE L1 -5 6146 3898 1838 184 20 75 chr4 153994910 153995405 -30293257 - L1MA10 LINE L1 -13 6321 5854 981 266 40 27 chr4 153995402 153995850 -30292812 - L1M4c LINE L1 -3489 3155 2702 * 4287 267 61 48 chr4 153995862 153997544 -30291118 - L1M4c LINE L1 -4187 2638 773 395 37 0 19 chr4 153997544 153997598 -30291064 + (TG)n Simple_repeat Simple_repeat 2 54 0 4287 267 61 48 chr4 153997598 153998359 -30290303 - L1M4c LINE L1 -6052 773 24 289 304 0 29 chr4 153998407 153998509 -30290153 - L1MDa LINE L1 -6408 132 34 882 94 8 0 chr4 154000471 154000598 -30288064 - L1P3 LINE L1 -567 5605 5478 257 49 24 0 chr4 154000594 154000635 -30288027 + L1PA8 LINE L1 6126 6167 -5 * 184 300 33 0 chr4 154000760 154000820 -30287842 - L2 LINE L2 -69 3203 3142 505 145 36 0 chr4 154001206 154001289 -30287373 + Tigger5 DNA MER2_type 2238 2323 0 1059 278 122 4 chr4 154004298 154004813 -30283849 - MER114 LTR ERV -70 578 3 6813 75 2 1 chr4 154004912 154006007 -30282655 + L1PA7 LINE L1 5056 6151 -3 3825 80 0 4 chr4 154006052 154006565 -30282097 - MER9 LTR ERVK 0 511 1 529 335 32 72 chr4 154007740 154008241 -30280421 - L1 LINE L1 -1055 5091 4611 222 156 0 0 chr4 154010090 154010135 -30278527 + (CTCA)n Simple_repeat Simple_repeat 3 47 0 186 43 0 0 chr4 154011384 154011407 -30277255 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 2230 94 3 0 chr4 154011594 154011882 -30276780 + AluSp SINE Alu 1 289 -24 868 221 67 14 chr4 154011979 154012187 -30276475 - MER20 DNA MER1_type 0 219 1 367 244 51 68 chr4 154012243 154012419 -30276243 - MER5B DNA MER1_type -1 177 5 107 63 0 0 chr4 154013346 154013537 -30275125 + AT_rich Low_complexity Low_complexity 1 191 0 3359 198 24 72 chr4 154013705 154014723 -30273939 + LTR5 LTR ERVK 1 969 0 22 70 0 0 chr4 154015533 154015576 -30273086 + AT_rich Low_complexity Low_complexity 1 43 0 1576 196 0 29 chr4 154016479 154016790 -30271872 - AluJb SINE Alu -10 302 1 399 246 113 39 chr4 154017483 154017686 -30270976 + L2 LINE L2 3094 3311 -2 21 36 0 0 chr4 154017973 154018001 -30270661 + AT_rich Low_complexity Low_complexity 1 28 0 1296 261 60 66 chr4 154019044 154019546 -30269116 - MLT1J LTR MaLR -12 499 1 2102 110 7 3 chr4 154019697 154019998 -30268664 - AluSg SINE Alu -8 302 1 1514 224 79 18 chr4 154020050 154020493 -30268169 - L1MD3 LINE L1 -9 7986 7517 324 0 0 0 chr4 154021710 154021746 -30266916 + (CA)n Simple_repeat Simple_repeat 2 37 0 239 272 165 29 chr4 154021777 154021880 -30266782 + L2 LINE L2 3197 3313 0 25 83 0 0 chr4 154023331 154023391 -30265271 + AT_rich Low_complexity Low_complexity 1 60 0 550 276 118 27 chr4 154023519 154023740 -30264922 - MIR SINE MIR -1 261 21 21 36 0 0 chr4 154023815 154023843 -30264819 + AT_rich Low_complexity Low_complexity 1 28 0 200 132 26 0 chr4 154024027 154024065 -30264597 + A-rich Low_complexity Low_complexity 3 41 0 2797 93 62 5 chr4 154024139 154024557 -30264105 - MLT2A1 LTR ERVL 0 444 3 1622 70 0 17 chr4 154024559 154024789 -30263873 - HERVL-A1 LTR ERVL 0 5654 5429 * 19955 71 8 0 chr4 154024772 154027312 -30261350 - HERVL-A1 LTR ERVL -3096 2558 1 271 137 78 0 chr4 154027312 154027363 -30261299 - MLT2A1 LTR ERVL 0 453 399 25 51 0 0 chr4 154027363 154027402 -30261260 + AT_rich Low_complexity Low_complexity 1 39 0 2801 98 25 8 chr4 154027402 154027800 -30260862 - MLT2A1 LTR ERVL -39 405 1 1999 164 45 19 chr4 154028865 154029243 -30259419 - MER61D LTR ERV1 0 501 114 21 0 0 0 chr4 154029392 154029413 -30259249 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr4 154029737 154029770 -30258892 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr4 154029834 154029857 -30258805 + AT_rich Low_complexity Low_complexity 1 23 0 2478 70 0 3 chr4 154031636 154031948 -30256714 - AluY SINE Alu 0 311 1 1749 111 16 0 chr4 154034080 154034332 -30254330 + AluSx SINE Alu 24 279 -33 208 121 0 0 chr4 154035838 154035871 -30252791 + (TG)n Simple_repeat Simple_repeat 2 34 0 321 131 16 16 chr4 154036000 154036061 -30252601 + MLT1I LTR MaLR 349 409 0 38 0 0 0 chr4 154036473 154036511 -30252151 + AT_rich Low_complexity Low_complexity 1 38 0 24 32 0 0 chr4 154036963 154036994 -30251668 + AT_rich Low_complexity Low_complexity 1 31 0 2063 189 34 39 chr4 154037427 154037935 -30250727 - MLT1D LTR MaLR 0 505 1 30 93 0 0 chr4 154037990 154038076 -30250586 + AT_rich Low_complexity Low_complexity 1 86 0 594 220 55 22 chr4 154038365 154038547 -30250115 - MER53 DNA DNA -1 188 1 238 277 50 17 chr4 154038743 154038862 -30249800 + L1MB8 LINE L1 5296 5418 -2390 877 205 5 11 chr4 154039105 154039290 -30249372 - AluJo SINE Alu -126 186 3 241 282 30 38 chr4 154039947 154040078 -30248584 + L2 LINE L2 3115 3244 -69 21 0 0 0 chr4 154041081 154041102 -30247560 + AT_rich Low_complexity Low_complexity 1 21 0 2205 114 0 0 chr4 154041434 154041741 -30246921 - AluY SINE Alu -4 307 1 1561 246 39 29 chr4 154041872 154042461 -30246201 + L1M4 LINE L1 969 1563 -4979 801 298 83 22 chr4 154042483 154042930 -30245732 - L1MC4 LINE L1 -375 7667 7194 340 207 84 34 chr4 154042933 154043112 -30245550 + Zaphod DNA AcHobo 685 872 -3159 472 262 118 0 chr4 154043227 154043414 -30245248 + Zaphod DNA AcHobo 3605 3813 -218 883 171 0 0 chr4 154043453 154043599 -30245063 - L1PA16 LINE L1 -20 6146 6001 702 253 21 0 chr4 154043610 154043796 -30244866 + Zaphod DNA AcHobo 3842 4031 0 300 133 0 5 chr4 154046542 154046598 -30242064 + Alu SINE Alu 252 299 -2 267 266 133 9 chr4 154046949 154047091 -30241571 - L1ME3A LINE L1 -217 5947 5790 639 318 56 49 chr4 154047587 154048586 -30240076 - L1MEd LINE L1 -4762 1548 513 486 169 12 0 chr4 154049011 154049094 -30239568 + MLT1C LTR MaLR 1 84 -383 1129 309 19 7 chr4 154049121 154049532 -30239130 + L1ME LINE L1 5294 5709 -453 552 190 155 28 chr4 154049524 154049666 -30238996 + L1MB8 LINE L1 6010 6169 -9 * 257 0 0 29 chr4 154049675 154049709 -30238953 + (GGAA)n Simple_repeat Simple_repeat 4 36 0 190 276 26 118 chr4 154049709 154049852 -30238810 + MIR3 SINE MIR 26 156 -52 22 35 0 0 chr4 154050642 154050671 -30237991 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr4 154050979 154051008 -30237654 + AT_rich Low_complexity Low_complexity 1 29 0 545 306 55 32 chr4 154051197 154051507 -30237155 - L1ME3A LINE L1 -15 6155 5839 27 62 0 0 chr4 154051524 154051572 -30237090 + AT_rich Low_complexity Low_complexity 1 48 0 219 316 93 36 chr4 154052593 154052732 -30235930 + MIR SINE MIR 56 202 -60 747 280 62 16 chr4 154052999 154053256 -30235406 + LTR40b LTR ERVL 156 424 -38 2324 169 12 37 chr4 154053317 154053748 -30234914 - MSTC LTR MaLR -6 422 3 2003 202 10 0 chr4 154054393 154054779 -30233883 - MLT1B LTR MaLR 0 390 1 1714 202 14 19 chr4 154054938 154055304 -30233358 + MLT1A1 LTR MaLR 2 365 0 28 48 0 0 chr4 154055886 154055928 -30232734 + AT_rich Low_complexity Low_complexity 1 42 0 801 206 42 6 chr4 154056142 154056307 -30232355 + MLT1A2 LTR MaLR 4 174 -200 668 240 9 4 chr4 154056387 154056567 -30232095 + MLT1A2 LTR MaLR 211 374 0 1584 170 24 6 chr4 154057298 154057628 -30231034 - L1MA4A LINE L1 -3 6300 5965 300 333 68 61 chr4 154058393 154058540 -30230122 + L2 LINE L2 3121 3268 -4 237 309 123 0 chr4 154059983 154060064 -30228598 - MIR SINE MIR -51 211 121 2058 117 0 0 chr4 154060396 154060678 -30227984 + AluSx SINE Alu 1 282 -30 188 309 140 44 chr4 154060719 154060855 -30227807 + MIR SINE MIR 114 262 0 1101 176 12 136 chr4 154060870 154061200 -30227462 - MLT1A1 LTR MaLR -48 317 29 389 211 11 11 chr4 154061223 154061318 -30227344 - L1MB4 LINE L1 -37 6143 6049 1389 254 151 23 chr4 154061903 154062479 -30226183 + LTR50 LTR ERVL 2 651 -144 900 173 71 0 chr4 154062479 154062647 -30226015 + MER68 LTR ERV1 1 180 -382 1873 223 38 5 chr4 154062711 154063105 -30225557 + MER68 LTR ERV1 156 562 0 269 146 18 18 chr4 154063140 154063195 -30225467 + LTR50 LTR ERVL 705 759 -36 465 157 0 0 chr4 154063327 154063442 -30225220 + (TA)n Simple_repeat Simple_repeat 2 116 0 307 260 0 42 chr4 154063444 154063540 -30225122 - L1MC4 LINE L1 -1339 6703 6612 470 144 0 40 chr4 154063541 154063715 -30224947 + (TA)n Simple_repeat Simple_repeat 1 167 0 327 227 10 62 chr4 154063768 154063865 -30224797 + L1MC4 LINE L1 6612 6703 -1339 1078 114 24 0 chr4 154064607 154064773 -30223889 + AluSq SINE Alu 144 313 0 203 364 93 0 chr4 154066306 154066424 -30222238 + MIR3 SINE MIR 53 181 -27 22 56 0 0 chr4 154066947 154066983 -30221679 + AT_rich Low_complexity Low_complexity 1 36 0 503 188 131 6 chr4 154067388 154067548 -30221114 + L2 LINE L2 2716 2895 -419 328 361 15 23 chr4 154067778 154067911 -30220751 + L2 LINE L2 3134 3265 -7 525 327 42 23 chr4 154067982 154068196 -30220466 - MIR SINE MIR -40 222 5 2181 114 0 19 chr4 154068655 154068971 -30219691 - AluSg SINE Alu 0 310 1 25 31 0 0 chr4 154068973 154069005 -30219657 + AT_rich Low_complexity Low_complexity 1 32 0 726 195 0 0 chr4 154069177 154069305 -30219357 - FLAM_C SINE Alu -15 128 1 229 221 128 23 chr4 154069316 154069402 -30219260 + MIR SINE MIR 130 224 -38 4192 56 56 12 chr4 154070932 154071909 -30216753 + MER11A LTR ERVK 4 1266 0 226 333 57 16 chr4 154073629 154073752 -30214910 + L2 LINE L2 3169 3296 -17 24 32 0 0 chr4 154074545 154074576 -30214086 + AT_rich Low_complexity Low_complexity 1 31 0 300 304 115 14 chr4 154075878 154076026 -30212636 - MIR SINE MIR -52 210 48 189 367 76 0 chr4 154076140 154076219 -30212443 + MIR SINE MIR 63 147 -61 357 329 175 27 chr4 154077499 154077900 -30210762 - L2 LINE L2 -1 3312 2853 353 318 71 31 chr4 154077901 154078225 -30210437 - L1M4 LINE L1 -3336 2810 2474 1610 158 84 6 chr4 154078244 154078567 -30210095 - L1 LINE L1 -1463 4683 4336 21 0 0 0 chr4 154079212 154079233 -30209429 + AT_rich Low_complexity Low_complexity 1 21 0 3360 197 21 35 chr4 154079705 154080409 -30208253 + MER54A LTR ERVL 16 901 0 202 205 0 0 chr4 154080512 154080551 -30208111 + (CATATA)n Simple_repeat Simple_repeat 2 40 0 342 394 33 6 chr4 154080779 154080959 -30207703 + MER5A DNA MER1_type 4 188 -1 21 0 0 0 chr4 154081031 154081052 -30207610 + AT_rich Low_complexity Low_complexity 1 21 0 296 264 24 56 chr4 154082029 154082154 -30206508 + HAL1 LINE L1 98 218 -2289 662 314 22 4 chr4 154082217 154082446 -30206216 - L1MC4 LINE L1 -1064 6978 6746 23 54 0 0 chr4 154083004 154083041 -30205621 + AT_rich Low_complexity Low_complexity 1 37 0 8151 48 13 0 chr4 154083113 154084067 -30204595 + LTR5 LTR ERVK 1 966 -3 241 317 75 25 chr4 154084167 154084489 -30204173 + L1MD2 LINE L1 5566 5903 -218 498 315 165 5 chr4 154085677 154085877 -30202785 + MIR SINE MIR 4 235 -27 2272 60 3 0 chr4 154086344 154086626 -30202036 + AluY SINE Alu 21 303 -8 26 0 0 0 chr4 154086694 154086720 -30201942 + AT_rich Low_complexity Low_complexity 1 26 0 180 0 0 0 chr4 154086876 154086896 -30201766 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 2095 199 97 22 chr4 154087438 154087982 -30200680 + L1MDa LINE L1 1674 2267 -4273 1993 134 10 13 chr4 154087982 154088296 -30200366 - AluSq SINE Alu 0 313 1 2095 199 97 22 chr4 154088296 154088340 -30200322 + L1MDa LINE L1 2267 2306 -4234 261 289 44 0 chr4 154088339 154088425 -30200237 + L1MD2 LINE L1 6047 6141 -218 * 919 208 87 52 chr4 154088425 154088656 -30200006 + MER8 DNA MER2_type 1 239 0 261 289 44 0 chr4 154088656 154088683 -30199979 + L1MD2 LINE L1 6141 6165 -194 * 439 269 34 0 chr4 154088667 154088816 -30199846 + L1MD3 LINE L1 7832 7985 -10 22 35 0 0 chr4 154088898 154088927 -30199735 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 154088945 154088966 -30199696 + AT_rich Low_complexity Low_complexity 1 21 0 674 231 111 21 chr4 154089204 154089447 -30199215 - L1MD2 LINE L1 -10 6349 6085 1303 160 32 21 chr4 154089485 154089930 -30198732 + LTR54 LTR ERV1 1 510 0 324 246 55 45 chr4 154091102 154091212 -30197450 + MIR3 SINE MIR 82 192 -16 2757 155 34 16 chr4 154091212 154091715 -30196947 - MER41E LTR ERV1 0 512 1 561 76 13 0 chr4 154092189 154092268 -30196394 + MADE1 DNA Mariner 1 80 0 387 250 11 11 chr4 154092273 154092361 -30196301 + MER58 DNA MER1_type 199 286 -2134 1263 214 6 85 chr4 154095619 154095861 -30192801 - MLT1A2 LTR MaLR 0 374 169 2274 108 3 0 chr4 154095861 154096167 -30192495 + AluSp SINE Alu 1 307 -6 1263 214 6 85 chr4 154096167 154096288 -30192374 - MLT1A2 LTR MaLR -205 169 40 42277 35 22 5 chr4 154098232 154104264 -30184398 + L1PA2 LINE L1 16 6152 -3 2617 49 0 0 chr4 154105362 154105670 -30182992 - AluY SINE Alu -3 308 1 24 53 0 0 chr4 154105960 154105998 -30182664 + AT_rich Low_complexity Low_complexity 1 38 0 2393 154 18 27 chr4 154106654 154106796 -30181866 + MER65A LTR ERV1 1 143 -302 2200 138 22 14 chr4 154106796 154107157 -30181505 - THE1B LTR MaLR 0 364 1 2393 154 18 27 chr4 154107157 154107463 -30181199 + MER65A LTR ERV1 143 445 0 583 280 44 31 chr4 154107704 154107929 -30180733 + MLT1I LTR MaLR 5 232 -177 235 205 77 13 chr4 154107978 154108056 -30180606 + MLT1J2 LTR MaLR 362 444 -6 21 0 0 0 chr4 154109249 154109270 -30179392 + AT_rich Low_complexity Low_complexity 1 21 0 1961 276 26 12 chr4 154109503 154110078 -30178584 - MER119 DNA MER1_type 0 583 1 664 196 57 13 chr4 154110093 154110251 -30178411 - MER3 DNA MER1_type -42 167 3 925 263 65 4 chr4 154110262 154110524 -30178138 - L2 LINE L2 -798 2516 2239 556 188 86 0 chr4 154110531 154110648 -30178014 - MIR SINE MIR -26 236 110 1366 196 55 55 chr4 154110721 154111084 -30177578 - MLT1A1 LTR MaLR 0 365 3 23 54 0 0 chr4 154111482 154111519 -30177143 + AT_rich Low_complexity Low_complexity 1 37 0 565 263 123 33 chr4 154111614 154111857 -30176805 - L1ME3A LINE L1 -73 6097 5833 244 255 0 0 chr4 154112182 154112233 -30176429 - MLT1F-int LTR MaLR -564 807 757 931 291 24 22 chr4 154112439 154112923 -30175739 - MLT1F-int LTR MaLR -765 606 5 721 246 60 30 chr4 154112927 154113113 -30175549 - MLT1F LTR MaLR 0 542 345 2122 101 0 4 chr4 154113113 154113413 -30175249 - AluSg1 SINE Alu 0 303 5 721 246 60 30 chr4 154113413 154113457 -30175205 - MLT1F LTR MaLR -197 345 304 207 0 0 0 chr4 154114024 154114047 -30174615 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 21 71 0 0 chr4 154115096 154115138 -30173524 + AT_rich Low_complexity Low_complexity 1 42 0 863 200 43 34 chr4 154115346 154115581 -30173081 - MER96B DNA MER1_type? -180 237 1 4047 123 38 71 chr4 154116541 154117353 -30171309 - LTR1 LTR ERV1 0 785 1 2694 191 34 56 chr4 154118413 154119254 -30169408 - LTR1 LTR ERV1 0 785 3 1652 203 43 6 chr4 154119580 154119930 -30168732 - MLT1A1 LTR MaLR -2 363 1 27 92 0 0 chr4 154119953 154120029 -30168633 + AT_rich Low_complexity Low_complexity 1 76 0 1381 114 32 0 chr4 154120074 154120294 -30168368 - L1P4 LINE L1 -651 5510 5284 2057 85 37 4 chr4 154120823 154121120 -30167542 - AluSq SINE Alu 0 308 3 22 0 0 0 chr4 154121497 154121519 -30167143 + AT_rich Low_complexity Low_complexity 1 22 0 213 65 0 0 chr4 154122286 154122317 -30166345 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 426 330 54 58 chr4 154125779 154126040 -30162622 - MIR SINE MIR 0 262 3 313 366 149 40 chr4 154126084 154127073 -30161589 + L2 LINE L2 1701 2820 -494 940 252 23 0 chr4 154127073 154127291 -30161371 - MER58A DNA MER1_type -1 223 1 313 366 149 40 chr4 154127291 154127389 -30161273 + L2 LINE L2 2820 2906 -408 1150 88 0 0 chr4 154127399 154127546 -30161116 - AluSc SINE Alu -7 302 156 273 357 14 56 chr4 154127550 154127693 -30160969 + L2 LINE L2 2924 3060 -212 246 192 0 0 chr4 154128594 154128646 -30160016 + (TATG)n Simple_repeat Simple_repeat 1 52 0 197 299 137 8 chr4 154128694 154128811 -30159851 - MIR SINE MIR -113 149 18 360 152 0 0 chr4 154129065 154129131 -30159531 + (TG)n Simple_repeat Simple_repeat 1 66 0 293 140 18 0 chr4 154129149 154129206 -30159456 + (TA)n Simple_repeat Simple_repeat 2 59 0 670 252 83 55 chr4 154129506 154129724 -30158938 - MIR SINE MIR -37 225 2 262 258 16 0 chr4 154131115 154131177 -30157485 - MER69 DNA AcHobo -2 2524 2462 1827 117 20 3 chr4 154131743 154132042 -30156620 + L1MA9 LINE L1 5793 6096 -216 249 119 0 0 chr4 154132049 154132091 -30156571 + (CA)n Simple_repeat Simple_repeat 1 42 0 658 153 28 56 chr4 154132094 154132238 -30156424 + L1MA9 LINE L1 6172 6311 -1 1553 119 0 0 chr4 154132830 154133048 -30155614 - AluSg/x SINE Alu -4 308 91 509 125 0 0 chr4 154133103 154133175 -30155487 - AluS SINE Alu -239 74 3 1637 122 48 19 chr4 154135401 154135672 -30152990 + AluY SINE Alu 19 297 -14 2106 97 16 3 chr4 154135898 154136206 -30152456 - L1PA11 LINE L1 -4 6170 5859 1538 183 3 30 chr4 154138548 154138843 -30149819 + AluJb SINE Alu 6 292 -20 342 0 0 0 chr4 154138843 154138881 -30149781 + (CA)n Simple_repeat Simple_repeat 2 39 0 1500 230 49 51 chr4 154138973 154139520 -30149142 + LTR55 LTR ERV 1 546 -2 3891 196 58 20 chr4 154139952 154141633 -30147029 - L1MB1 LINE L1 0 6168 4360 3675 101 35 0 chr4 154141633 154142180 -30146482 - L1PA13 LINE L1 0 6163 5598 3269 50 0 0 chr4 154142180 154142584 -30146078 - L1P LINE L1 -2449 3697 3294 230 105 26 0 chr4 154142580 154142618 -30146044 + L1P2 LINE L1 5664 5702 -452 * 1029 196 51 0 chr4 154142725 154142812 -30145850 - L1MB1 LINE L1 -1800 4346 4265 276 53 0 0 chr4 154142812 154142850 -30145812 + (TG)n Simple_repeat Simple_repeat 1 38 0 1029 196 51 0 chr4 154142850 154142976 -30145686 - L1MB1 LINE L1 -1881 4265 4122 1518 202 3 26 chr4 154142988 154143295 -30145367 - AluJo SINE Alu -12 300 1 6160 202 21 31 chr4 154145005 154146522 -30142140 + L1 LINE L1 2793 4294 -1852 702 326 60 4 chr4 154147039 154147272 -30141390 - MIR SINE MIR -1 261 16 307 311 47 19 chr4 154147600 154147706 -30140956 + L3 LINE CR1 1407 1515 -62 355 223 21 21 chr4 154147773 154147867 -30140795 - MIR SINE MIR -101 161 68 326 354 91 18 chr4 154148220 154148505 -30140157 + LTR67 LTR ERVL 251 556 -1 25 0 0 0 chr4 154149194 154149219 -30139443 + AT_rich Low_complexity Low_complexity 1 25 0 696 199 125 125 chr4 154149352 154149713 -30138949 - MLT1A1 LTR MaLR -4 361 1 23 0 0 0 chr4 154149771 154149794 -30138868 + AT_rich Low_complexity Low_complexity 1 23 0 835 215 31 10 chr4 154150376 154150571 -30138091 - MLT1C LTR MaLR 0 467 269 290 149 0 0 chr4 154150571 154150618 -30138044 - MER41A LTR ERV1 0 554 508 3373 139 7 30 chr4 154150718 154151099 -30137563 - MER41B LTR ERV1 -78 557 192 4977 85 30 0 chr4 154151099 154151796 -30136866 - L1PA11 LINE L1 0 6174 5457 3373 139 7 30 chr4 154151796 154151984 -30136678 - MER41B LTR ERV1 -443 192 1 732 193 117 50 chr4 154151997 154152236 -30136426 - MLT1C LTR MaLR -210 257 3 399 372 4 2 chr4 154152280 154152443 -30136219 - MIR3 SINE MIR -19 189 46 396 40 0 0 chr4 154152444 154152494 -30136168 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 2112 123 0 7 chr4 154152506 154152807 -30135855 - AluSq SINE Alu -14 299 1 334 317 138 6 chr4 154152924 154153091 -30135571 - MIR SINE MIR -16 246 58 1249 205 87 38 chr4 154153447 154153735 -30134927 - AluJo SINE Alu 0 302 1 2069 161 102 8 chr4 154154150 154154541 -30134121 - MSTA LTR MaLR 0 428 1 25 31 0 0 chr4 154205088 154205120 -30083542 + AT_rich Low_complexity Low_complexity 1 32 0 1518 137 0 21 chr4 154205158 154205391 -30083271 + AluSx SINE Alu 1 228 -84 237 119 0 0 chr4 154205407 154205449 -30083213 + (CA)n Simple_repeat Simple_repeat 1 42 0 726 270 69 54 chr4 154205800 154206237 -30082425 - MER57B LTR ERV1 0 434 1 25 31 0 0 chr4 154207860 154207892 -30080770 + AT_rich Low_complexity Low_complexity 1 32 0 429 260 156 7 chr4 154207913 154208067 -30080595 - MIR SINE MIR -72 190 14 243 295 147 0 chr4 154209347 154209442 -30079220 - L2 LINE L2 -1 3271 3163 391 271 12 41 chr4 154209804 154209974 -30078688 + MER103 DNA DNA 2 166 0 246 287 261 21 chr4 154210037 154210225 -30078437 + L3 LINE CR1 287 519 -1058 1003 239 29 0 chr4 154210403 154210608 -30078054 - MER58A DNA MER1_type -12 212 2 748 312 157 39 chr4 154210646 154211238 -30077424 + L3 LINE CR1 771 1465 -112 1419 181 128 15 chr4 154211238 154211575 -30077087 - THE1C LTR MaLR 0 375 1 748 312 157 39 chr4 154211575 154211704 -30076958 + L3 LINE CR1 1465 1577 0 642 287 43 122 chr4 154213701 154214168 -30074494 - MLT1J2 LTR MaLR 0 450 21 252 0 0 0 chr4 154215115 154215143 -30073519 + (CA)n Simple_repeat Simple_repeat 2 29 0 1728 139 4 8 chr4 154215682 154215941 -30072721 - AluJo SINE Alu -54 258 1 182 351 72 52 chr4 154215942 154216346 -30072316 + L2 LINE L2 2062 2473 -841 183 313 0 90 chr4 154216693 154216827 -30071835 + L2 LINE L2 2918 3039 -233 198 71 0 0 chr4 154220071 154220099 -30068563 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 241 347 51 15 chr4 154220144 154220340 -30068322 + L2 LINE L2 2150 2352 -962 277 222 0 0 chr4 154222553 154222607 -30066055 + AluJ/monomer SINE Alu 1 54 -246 2180 92 3 0 chr4 154223121 154223448 -30065214 + AluY SINE Alu 1 328 0 219 333 39 0 chr4 154223460 154223538 -30065124 + L2 LINE L2 2454 2534 -780 25 31 0 0 chr4 154223598 154223630 -30065032 + AT_rich Low_complexity Low_complexity 1 32 0 310 273 15 0 chr4 154224306 154224372 -30064290 + L2 LINE L2 3206 3272 0 1894 190 47 26 chr4 154224549 154225086 -30063576 - MLT2A2 LTR ERVL -1 553 2 977 298 101 57 chr4 154225579 154226530 -30062132 - L2 LINE L2 -1 3312 2285 1767 188 0 3 chr4 154228383 154228687 -30059975 + AluJb SINE Alu 3 305 -7 571 335 51 73 chr4 154229158 154229987 -30058675 + L2 LINE L2 2470 3271 -1 524 127 0 0 chr4 154230560 154230639 -30058023 - MADE1 DNA Mariner -1 79 1 387 0 0 0 chr4 154230639 154230682 -30057980 + (TA)n Simple_repeat Simple_repeat 2 44 0 511 304 115 0 chr4 154230822 154231013 -30057649 - MIR SINE MIR -2 260 48 2357 103 0 0 chr4 154231635 154231936 -30056726 - AluSg SINE Alu -9 301 1 2134 142 16 3 chr4 154232449 154232829 -30055833 - L1MB1 LINE L1 -3 6165 5781 208 209 23 0 chr4 154232835 154232878 -30055784 + (TA)n Simple_repeat Simple_repeat 2 45 0 467 136 32 96 chr4 154232889 154233014 -30055648 - THE1C LTR MaLR -74 301 185 8707 179 26 2 chr4 154233014 154234992 -30053670 - L1P5 LINE L1 -625 5526 3510 * 13726 200 16 40 chr4 154234982 154237154 -30051508 - L1 LINE L1 -1014 5834 3610 2022 100 3 50 chr4 154237154 154237488 -30051174 - AluSq SINE Alu 0 320 1 13726 200 16 40 chr4 154237488 154241293 -30047369 - L1 LINE L1 -3238 3610 3 4135 238 101 30 chr4 154241294 154241356 -30047306 - L1 LINE L1 -2389 5176 5120 198 0 0 0 chr4 154241356 154241378 -30047284 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 4135 238 101 30 chr4 154241378 154242731 -30045931 - L1 LINE L1 -2445 5120 3865 216 0 0 0 chr4 154242731 154242755 -30045907 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4135 238 101 30 chr4 154242755 154242830 -30045832 - L1 LINE L1 -3700 3865 3797 1551 172 192 8 chr4 154242830 154243190 -30045472 - MSTA LTR MaLR -2 426 1 4135 238 101 30 chr4 154243190 154243730 -30044932 - L1 LINE L1 -3768 3797 2916 27 29 0 0 chr4 154244075 154244109 -30044553 + AT_rich Low_complexity Low_complexity 1 34 0 317 183 73 0 chr4 154244243 154244325 -30044337 - MER53 DNA DNA -96 93 6 257 331 206 19 chr4 154244483 154244643 -30044019 - MIR SINE MIR -17 245 56 2363 91 3 0 chr4 154244645 154244952 -30043710 + AluSp SINE Alu 1 308 -5 202 379 53 0 chr4 154245129 154245224 -30043438 - L2 LINE L2 -5 3267 3168 22 0 0 0 chr4 154245284 154245306 -30043356 + AT_rich Low_complexity Low_complexity 1 22 0 32 43 0 0 chr4 154245642 154245688 -30042974 + AT_rich Low_complexity Low_complexity 1 46 0 1499 164 25 0 chr4 154247609 154247853 -30040809 + AluJo SINE Alu 47 296 -16 570 302 37 9 chr4 154248092 154248307 -30040355 + Charlie2 DNA MER1_type 123 343 -2439 1127 200 45 124 chr4 154248388 154248968 -30039694 + Charlie2 DNA MER1_type 2328 2861 -1 650 87 0 0 chr4 154249540 154249632 -30039030 + AluS SINE Alu 1 92 -221 284 321 15 37 chr4 154250166 154250300 -30038362 + L2 LINE L2 3183 3313 0 22 70 0 0 chr4 154251289 154251332 -30037330 + AT_rich Low_complexity Low_complexity 1 43 0 243 0 0 0 chr4 154251425 154251452 -30037210 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 204 163 0 0 chr4 154251824 154251867 -30036795 + CT-rich Low_complexity Low_complexity 2 44 0 33 25 0 0 chr4 154252159 154252199 -30036463 + AT_rich Low_complexity Low_complexity 1 40 0 3609 158 32 37 chr4 154253245 154253327 -30035335 - MER50 LTR ERV1 -23 711 630 225 0 0 0 chr4 154253327 154253352 -30035310 + (GA)n Simple_repeat Simple_repeat 2 26 0 3609 158 32 37 chr4 154253352 154253976 -30034686 - MER50 LTR ERV1 -104 630 8 2165 113 10 0 chr4 154254244 154254553 -30034109 - AluSp SINE Alu -1 312 1 242 293 40 20 chr4 154254577 154254727 -30033935 + MLT1H LTR MaLR 73 225 -324 259 308 107 30 chr4 154255216 154255385 -30033277 + MIR SINE MIR 53 234 -28 453 238 30 0 chr4 154255405 154255506 -30033156 + MER3 DNA MER1_type 7 110 -99 655 218 0 0 chr4 154255751 154255875 -30032787 + FRAM SINE Alu 40 163 -13 329 260 117 0 chr4 154255907 154256034 -30032628 + L1ME LINE L1 2341 2475 -3951 3315 148 25 7 chr4 154256039 154256606 -30032056 + L1PA16 LINE L1 5581 6157 -9 930 264 126 16 chr4 154256634 154257425 -30031237 + L1ME LINE L1 4957 5819 -625 456 150 165 0 chr4 154257440 154257573 -30031089 + L1ME LINE L1 5899 6053 -391 291 371 19 14 chr4 154257642 154257855 -30030807 - LTR16A LTR ERVL -76 374 161 236 345 44 0 chr4 154257933 154258046 -30030616 - LTR16A LTR ERVL -323 127 10 672 241 27 40 chr4 154258081 154258305 -30030357 + L1ME3A LINE L1 5943 6163 -7 1218 52 0 0 chr4 154258704 154258858 -30029804 - L1PA5 LINE L1 -2 6152 5999 184 322 143 53 chr4 154259472 154260096 -30028566 - L2 LINE L2 -1060 2254 1575 204 131 33 82 chr4 154260707 154260768 -30027894 - MIR SINE MIR -135 127 70 23 33 0 0 chr4 154261263 154261293 -30027369 + AT_rich Low_complexity Low_complexity 1 30 0 407 389 22 6 chr4 154261830 154262010 -30026652 - MER5A DNA MER1_type 0 189 7 1129 320 111 8 chr4 154262265 154262877 -30025785 + Charlie7 DNA MER1_type 7 681 -1931 26 0 0 0 chr4 154262895 154262921 -30025741 + AT_rich Low_complexity Low_complexity 1 26 0 190 259 65 37 chr4 154263133 154263241 -30025421 + L2 LINE L2 2871 2981 -291 185 286 66 55 chr4 154263437 154263528 -30025134 + L2 LINE L2 3137 3228 -44 608 123 9 0 chr4 154264445 154264551 -30024111 - L1MA4 LINE L1 -1 6299 6193 224 109 0 22 chr4 154267408 154267454 -30021208 + (TA)n Simple_repeat Simple_repeat 2 46 0 2215 100 17 0 chr4 154267457 154267756 -30020906 - AluY SINE Alu -7 304 1 21 0 0 0 chr4 154267793 154267814 -30020848 + AT_rich Low_complexity Low_complexity 1 21 0 188 0 74 0 chr4 154267814 154267841 -30020821 + (TTATA)n Simple_repeat Simple_repeat 1 29 0 273 57 0 0 chr4 154267930 154267965 -30020697 + (TAA)n Simple_repeat Simple_repeat 3 37 0 467 301 61 15 chr4 154267969 154268185 -30020477 - L1ME LINE L1 -400 5762 5538 360 311 192 10 chr4 154268575 154268887 -30019775 + L2 LINE L2 2210 2578 -736 251 324 98 44 chr4 154268906 154269110 -30019552 - MIR SINE MIR -34 228 14 1346 146 50 0 chr4 154269286 154269505 -30019157 + MER30 DNA MER1_type 1 230 0 221 204 74 0 chr4 154269953 154270007 -30018655 - MIR SINE MIR -10 252 195 4103 167 43 80 chr4 154270365 154271115 -30017547 + L1MA9 LINE L1 5011 5692 -620 2013 182 42 31 chr4 154271115 154271539 -30017123 + MSTB1 LTR MaLR 4 432 0 4103 167 43 80 chr4 154271539 154272133 -30016529 + L1MA9 LINE L1 5692 6306 -6 927 251 114 14 chr4 154272227 154272276 -30016386 - L1ME LINE L1 -1474 4672 4629 246 62 0 0 chr4 154272276 154272308 -30016354 + (CA)n Simple_repeat Simple_repeat 1 32 0 927 251 114 14 chr4 154272308 154272555 -30016107 - L1ME LINE L1 -1517 4629 4408 231 36 0 0 chr4 154272555 154272583 -30016079 + (CA)n Simple_repeat Simple_repeat 1 28 0 927 251 114 14 chr4 154272583 154272731 -30015931 - L1ME LINE L1 -1738 4408 4182 570 289 52 13 chr4 154272757 154273062 -30015600 - L1ME LINE L1 -3699 2447 2131 189 0 0 0 chr4 154273197 154273218 -30015444 + (GA)n Simple_repeat Simple_repeat 2 22 0 565 278 79 52 chr4 154273717 154273969 -30014693 + MIR SINE MIR 4 262 0 303 28 0 0 chr4 154273970 154274006 -30014656 + (CAT)n Simple_repeat Simple_repeat 3 38 0 181 214 107 18 chr4 154274242 154274298 -30014364 + L3 LINE CR1 1208 1268 -309 4217 180 26 10 chr4 154274513 154275423 -30013239 - L1MA7 LINE L1 -172 6119 5195 206 313 127 22 chr4 154276008 154276142 -30012520 - MIR SINE MIR -14 248 101 1117 267 35 26 chr4 154276895 154277243 -30011419 + MLT1E LTR MaLR 228 578 -15 186 143 0 0 chr4 154277349 154277384 -30011278 + (CA)n Simple_repeat Simple_repeat 2 36 0 590 294 126 4 chr4 154277387 154277618 -30011044 + MIR SINE MIR 1 259 -3 536 110 0 11 chr4 154281938 154282029 -30006633 + (GGAA)n Simple_repeat Simple_repeat 2 91 0 3255 73 0 7 chr4 154282318 154282769 -30005893 + LTR7 LTR ERV1 1 448 -2 20187 89 10 29 chr4 154282771 154285822 -30002840 + HERVH LTR ERV1 1 2995 -4718 974 120 7 0 chr4 154285801 154285951 -30002711 + HERVH LTR ERV1 3140 3290 -4423 * 3347 119 0 6 chr4 154285941 154286446 -30002216 + HERVH LTR ERV1 3492 3993 -3720 4388 139 1 1 chr4 154286448 154287110 -30001552 + HERVH LTR ERV1 4488 5149 -2564 1361 131 18 14 chr4 154287107 154287329 -30001333 + HERVH LTR ERV1 5597 5819 -1894 * 2496 77 48 13 chr4 154287327 154287706 -30000956 + HERVH LTR ERV1 7322 7713 0 3481 53 0 7 chr4 154287706 154288157 -30000505 + LTR7 LTR ERV1 1 448 -2 516 95 0 0 chr4 154288407 154288481 -30000181 + MADE1 DNA Mariner 7 80 0 232 307 11 11 chr4 154290524 154290612 -29998050 + LTR67 LTR ERVL 47 134 -423 254 337 124 17 chr4 154290825 154291003 -29997659 + LTR67 LTR ERVL 360 556 -1 1844 288 46 25 chr4 154291347 154291913 -29996749 + MLT1E LTR MaLR 15 592 -1 216 0 0 0 chr4 154291942 154291966 -29996696 + (T)n Simple_repeat Simple_repeat 1 24 0 26 64 0 0 chr4 154293281 154293328 -29995334 + AT_rich Low_complexity Low_complexity 1 47 0 272 291 205 24 chr4 154294897 154295107 -29993555 + MIR SINE MIR 12 259 -3 188 292 112 0 chr4 154295160 154295249 -29993413 - L2 LINE L2 -8 3305 3207 2007 123 34 22 chr4 154295276 154295634 -29993028 - L1MA6 LINE L1 0 6300 5939 1451 83 0 0 chr4 154295686 154295878 -29992784 + L1PA5 LINE L1 5961 6152 -2 1757 178 31 19 chr4 154296317 154296676 -29991986 + MLT1A1 LTR MaLR 3 365 0 1192 141 180 7 chr4 154298541 154298848 -29989814 - MER46B DNA MER2_type 0 236 1 302 262 222 8 chr4 154298954 154299080 -29989582 + MLT1H LTR MaLR 3 155 -394 233 264 25 74 chr4 154299289 154299320 -29989342 + MLT1H LTR MaLR 428 459 -90 264 30 0 0 chr4 154299320 154299353 -29989309 + (CAA)n Simple_repeat Simple_repeat 1 33 0 233 264 25 74 chr4 154299353 154299442 -29989220 + MLT1H LTR MaLR 459 542 -7 800 321 74 50 chr4 154299465 154300007 -29988655 - LTR67 LTR ERVL 0 557 3 288 256 26 0 chr4 154300493 154300571 -29988091 - ERVL LTR ERVL -467 5297 5218 293 233 139 0 chr4 154300876 154300962 -29987700 - MER58 DNA MER1_type 0 2420 2323 216 0 0 0 chr4 154301023 154301047 -29987615 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 355 325 83 64 chr4 154301225 154301644 -29987018 - LTR67 LTR ERVL -44 513 87 230 269 0 0 chr4 154302085 154302178 -29986484 + (TCTA)n Simple_repeat Simple_repeat 2 94 0 1059 340 125 46 chr4 154303359 154303962 -29984700 - L2 LINE L2 0 3272 2718 1932 128 38 0 chr4 154303962 154304274 -29984388 + AluSc SINE Alu 1 309 0 1059 340 125 46 chr4 154304274 154305025 -29983637 - L2 LINE L2 -554 2718 1802 22 35 0 0 chr4 154305025 154305054 -29983608 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 154305154 154305175 -29983487 + AT_rich Low_complexity Low_complexity 1 21 0 241 301 133 18 chr4 154305278 154305391 -29983271 - MIR3 SINE MIR -79 129 4 900 307 30 13 chr4 154306888 154307191 -29981471 - LTR16A LTR ERVL 0 450 143 423 315 153 39 chr4 154309128 154309487 -29979175 - MLT1K LTR MaLR -187 401 2 1669 179 11 3 chr4 154309770 154310055 -29978607 + AluJb SINE Alu 3 289 -23 2122 143 14 20 chr4 154310217 154310574 -29978088 - THE1B LTR MaLR -9 355 1 2023 198 80 18 chr4 154311506 154311956 -29976706 + LTR53 LTR ERVL 1 478 -41 198 260 20 137 chr4 154312422 154312568 -29976094 - MIR SINE MIR -63 199 71 336 280 65 32 chr4 154312960 154313155 -29975507 + LTR16A1 LTR ERVL 292 457 0 244 267 71 86 chr4 154313420 154313630 -29975032 - MIR SINE MIR -42 220 14 201 74 0 0 chr4 154314706 154314733 -29973929 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 568 277 136 21 chr4 154314734 154314969 -29973693 - L2 LINE L2 -906 2408 2147 27 29 0 0 chr4 154317074 154317108 -29971554 + AT_rich Low_complexity Low_complexity 1 34 0 243 79 0 0 chr4 154317806 154317844 -29970818 + (TC)n Simple_repeat Simple_repeat 1 38 0 230 282 62 42 chr4 154320792 154320995 -29967667 + L2 LINE L2 2840 3039 -274 * 1342 286 75 19 chr4 154320981 154321761 -29966901 - L2 LINE L2 0 3313 2490 220 349 23 12 chr4 154321880 154321966 -29966696 + L2 LINE L2 3221 3307 -6 300 286 132 26 chr4 154322351 154322578 -29966084 - MIR SINE MIR -10 252 2 250 159 29 14 chr4 154323161 154323230 -29965432 + GA-rich Low_complexity Low_complexity 2 71 0 268 329 29 29 chr4 154324555 154324692 -29963970 - MER5A DNA MER1_type 0 189 53 2290 77 0 46 chr4 154326732 154327058 -29961604 - AluY SINE Alu 0 311 1 345 333 78 45 chr4 154327279 154327636 -29961026 - MLT1K LTR MaLR -55 533 165 218 195 0 0 chr4 154328877 154328918 -29959744 + CT-rich Low_complexity Low_complexity 2 42 0 244 210 0 32 chr4 154329651 154329680 -29958982 + (TA)n Simple_repeat Simple_repeat 2 30 -31 234 0 0 0 chr4 154329680 154329706 -29958956 + (TG)n Simple_repeat Simple_repeat 1 26 0 244 210 0 32 chr4 154329706 154329738 -29958924 + (TA)n Simple_repeat Simple_repeat 30 61 0 1287 77 0 0 chr4 154329826 154329996 -29958666 + L1MA1 LINE L1 6124 6293 -9 22 35 0 0 chr4 154329997 154330026 -29958636 + AT_rich Low_complexity Low_complexity 1 29 0 2640 238 16 7 chr4 154331427 154332111 -29956551 + L1MA10 LINE L1 4708 5397 -749 4696 207 28 12 chr4 154332115 154333227 -29955435 + L1P LINE L1 945 2074 -4072 4849 102 0 0 chr4 154333229 154333898 -29954764 + L1PA8A LINE L1 5450 6118 -13 4175 180 37 35 chr4 154333923 154334846 -29953816 + L1MA10 LINE L1 5388 6312 -22 23 54 0 0 chr4 154335501 154335538 -29953124 + AT_rich Low_complexity Low_complexity 1 37 0 359 0 0 17015 chr4 154335559 154335670 -29952992 - Charlie8 DNA MER1_type -4 1424 6262 1630 190 29 29 chr4 154335670 154335776 -29952886 + MER7A DNA MER2_type 1 106 -2932 2379 68 3 0 chr4 154335776 154336072 -29952590 - AluY SINE Alu -14 297 1 1630 190 29 29 chr4 154336072 154336313 -29952349 + MER7A DNA MER2_type 105 346 0 359 0 0 17015 chr4 154336313 154336499 -29952163 - Charlie8 DNA MER1_type 4835 6263 38 1886 132 0 0 chr4 154336847 154337128 -29951534 + AluSg SINE Alu 3 283 -27 186 43 0 0 chr4 154337128 154337151 -29951511 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 275 217 11 43 chr4 154337679 154337771 -29950891 + A-rich Low_complexity Low_complexity 1 89 0 430 202 151 105 chr4 154340099 154340337 -29948325 + MIR SINE MIR 14 262 0 362 265 118 73 chr4 154340375 154340620 -29948042 - L2 LINE L2 -9 3304 3049 234 298 0 0 chr4 154342009 154342066 -29946596 + (CA)n Simple_repeat Simple_repeat 2 58 0 1110 274 21 29 chr4 154343386 154343769 -29944893 - L1ME3A LINE L1 -1 6169 5790 282 283 58 0 chr4 154343764 154343884 -29944778 - L1MEc LINE L1 -2635 3580 3454 * 841 265 85 18 chr4 154343892 154344446 -29944216 - L1MEc LINE L1 -2795 3420 2830 1596 285 55 13 chr4 154344479 154344953 -29943709 + LTR40a LTR ERVL 1 494 -25 909 283 27 51 chr4 154344956 154345370 -29943292 + L1M3d LINE L1 1 404 -5487 2184 166 78 2 chr4 154345503 154345950 -29942712 + L1MB1 LINE L1 5688 6168 0 633 206 22 0 chr4 154345980 154346116 -29942546 + L1MD2 LINE L1 5813 5951 -408 518 314 56 15 chr4 154346112 154346449 -29942213 - L1MEc LINE L1 -3475 2740 2390 * 1479 218 52 6 chr4 154346479 154346828 -29941834 - MLT1A1 LTR MaLR 0 365 1 702 212 71 6 chr4 154346834 154347004 -29941658 + MER58C DNA MER1_type 35 215 0 267 254 82 0 chr4 154347086 154347208 -29941454 - L1MEc LINE L1 -4094 2302 2171 777 254 136 3 chr4 154347394 154347717 -29940945 - MLT1B LTR MaLR -5 385 20 276 229 141 57 chr4 154347852 154348044 -29940618 - L1MEc LINE L1 -4564 1832 1625 2632 156 47 6 chr4 154348141 154348636 -29940026 - L1MA4 LINE L1 -1 6299 5785 375 326 45 21 chr4 154348651 154349025 -29939637 - L1MEc LINE L1 -4755 1641 1259 308 321 68 14 chr4 154349275 154349496 -29939166 - L1MEc LINE L1 -5258 1138 906 1429 218 25 74 chr4 154349597 154350121 -29938541 + L1MC4 LINE L1 7027 7524 -518 255 292 51 74 chr4 154350140 154350356 -29938306 - L2 LINE L2 -747 2567 2357 801 261 290 8 chr4 154351760 154352143 -29936519 - LTR50 LTR ERVL -304 491 1 367 279 206 30 chr4 154352715 154353088 -29935574 + MLT1H LTR MaLR 109 547 -2 2159 114 0 0 chr4 154353934 154354232 -29934430 + AluSx SINE Alu 1 298 -14 297 196 76 43 chr4 154355377 154355469 -29933193 - MLT1J2 LTR MaLR -284 166 72 312 27 0 0 chr4 154356644 154356681 -29931981 + (TG)n Simple_repeat Simple_repeat 1 37 0 5275 201 76 19 chr4 154358929 154360280 -29928382 + Charlie1a DNA MER1_type 27 1455 0 25 0 0 0 chr4 154361297 154361322 -29927340 + AT_rich Low_complexity Low_complexity 1 25 0 699 24 0 0 chr4 154361504 154361589 -29927073 + AluY SINE Alu 5 89 -222 1879 134 3 3 chr4 154361689 154361972 -29926690 - AluSx SINE Alu -29 283 1 210 354 63 0 chr4 154361998 154362077 -29926585 + MIR SINE MIR 49 132 -130 24 53 0 0 chr4 154362705 154362743 -29925919 + AT_rich Low_complexity Low_complexity 1 38 0 1419 242 80 34 chr4 154363286 154363898 -29924764 + Charlie2 DNA MER1_type 1856 2495 -367 1772 74 0 0 chr4 154363901 154364118 -29924544 - AluY SINE Alu -11 300 84 535 243 56 32 chr4 154364119 154364370 -29924292 + Charlie2 DNA MER1_type 2606 2862 0 279 0 0 0 chr4 154365217 154365248 -29923414 + (TG)n Simple_repeat Simple_repeat 2 32 0 2154 108 10 0 chr4 154366946 154367251 -29921411 + AluSx SINE Alu 2 309 -3 27 0 0 0 chr4 154367855 154367882 -29920780 + AT_rich Low_complexity Low_complexity 1 27 0 1981 141 21 0 chr4 154367882 154368172 -29920490 + AluSx SINE Alu 2 297 -15 676 278 94 38 chr4 154368246 154368534 -29920128 - L2 LINE L2 0 3313 3010 1901 135 7 0 chr4 154369222 154369504 -29919158 + AluSg SINE Alu 27 310 0 1600 175 31 14 chr4 154370618 154370910 -29917752 + AluJb SINE Alu 1 297 -15 1068 234 173 24 chr4 154371021 154371392 -29917270 - LTR40c LTR ERVL -38 427 2 198 71 0 0 chr4 154371470 154371498 -29917164 + (TC)n Simple_repeat Simple_repeat 1 28 0 180 111 0 0 chr4 154371511 154371538 -29917124 + (CA)n Simple_repeat Simple_repeat 1 27 0 299 231 154 0 chr4 154372675 154372792 -29915870 - L2 LINE L2 -47 3266 3132 349 341 62 19 chr4 154373132 154373340 -29915322 - MIR SINE MIR 0 262 46 2201 210 38 0 chr4 154373536 154373983 -29914679 - MLT1C LTR MaLR -3 464 1 24 32 0 0 chr4 154375207 154375238 -29913424 + AT_rich Low_complexity Low_complexity 1 31 0 22 88 0 0 chr4 154375543 154375600 -29913062 + AT_rich Low_complexity Low_complexity 1 57 0 23 33 0 0 chr4 154375838 154375868 -29912794 + AT_rich Low_complexity Low_complexity 1 30 0 1962 122 14 0 chr4 154375900 154376221 -29912441 - AluSx SINE Alu 0 325 1 24 32 0 0 chr4 154376955 154376986 -29911676 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 154377158 154377179 -29911483 + AT_rich Low_complexity Low_complexity 1 21 0 1147 225 4 19 chr4 154377382 154377640 -29911022 + AluJo SINE Alu 36 289 -23 41 0 0 0 chr4 154377795 154377836 -29910826 + AT_rich Low_complexity Low_complexity 1 41 0 4345 153 7 5 chr4 154377847 154378605 -29910057 + L1MA4 LINE L1 5540 6298 -2 413 145 0 0 chr4 154378937 154379006 -29909656 - L1MA9 LINE L1 -191 6121 6053 1020 136 0 86 chr4 154379006 154379223 -29909439 + L1MA9 LINE L1 6111 6312 0 22 0 0 0 chr4 154379223 154379245 -29909417 + AT_rich Low_complexity Low_complexity 1 22 0 1609 209 71 0 chr4 154379351 154379676 -29908986 - MER7A DNA MER2_type 0 346 1 26 88 0 0 chr4 154380245 154380313 -29908349 + AT_rich Low_complexity Low_complexity 1 68 0 219 36 0 0 chr4 154380779 154380807 -29907855 + (TG)n Simple_repeat Simple_repeat 1 28 0 296 0 0 0 chr4 154381959 154381992 -29906670 + U2 snRNA snRNA 1 33 -155 749 247 20 31 chr4 154382237 154382492 -29906170 - L1MA9 LINE L1 -46 6266 6015 1380 88 62 0 chr4 154382502 154382695 -29905967 - MER30 DNA MER1_type -25 205 1 27 81 0 0 chr4 154383009 154383071 -29905591 + AT_rich Low_complexity Low_complexity 1 62 0 528 147 20 10 chr4 154383138 154383240 -29905422 - Charlie1 DNA MER1_type -250 2511 2409 198 0 0 0 chr4 154383242 154383264 -29905398 + (TG)n Simple_repeat Simple_repeat 2 23 0 1884 151 3 0 chr4 154383542 154383826 -29904836 + AluSx SINE Alu 1 285 -27 336 269 81 44 chr4 154383917 154384077 -29904585 + MER5B DNA MER1_type 11 176 -2 668 293 86 9 chr4 154385271 154385503 -29903159 - LTR16A LTR ERVL 0 450 201 4926 38 2 0 chr4 154385503 154386113 -29902549 + L1P LINE L1 2555 3165 -2981 2819 160 18 18 chr4 154387131 154387682 -29900980 - L1MA7 LINE L1 -207 6084 5534 23 33 0 0 chr4 154387723 154387753 -29900909 + AT_rich Low_complexity Low_complexity 1 30 0 451 228 55 31 chr4 154387866 154387993 -29900669 - MIR SINE MIR -6 256 127 590 193 0 26 chr4 154388053 154388167 -29900495 - AluSq/x SINE Alu -182 131 21 697 272 161 25 chr4 154388842 154389158 -29899504 + L2 LINE L2 1890 2248 -1066 493 240 137 29 chr4 154389203 154389378 -29899284 + L2 LINE L2 2452 2645 -669 1175 98 6 0 chr4 154389665 154389838 -29898824 + THE1C LTR MaLR 202 375 0 5978 171 26 38 chr4 154389838 154391158 -29897504 + THE1C-int LTR MaLR 1 1305 -275 555 179 0 0 chr4 154391312 154391418 -29897244 + (CA)n Simple_repeat Simple_repeat 2 107 0 1567 188 7 11 chr4 154392251 154392578 -29896084 + AluJb SINE Alu 1 326 0 361 0 0 0 chr4 154392538 154392638 -29896024 + (TAA)n Simple_repeat Simple_repeat 1 100 0 1717 174 23 7 chr4 154392850 154393149 -29895513 - AluJo SINE Alu -8 304 1 828 144 0 20 chr4 154393163 154393309 -29895353 - AluSp/q SINE Alu 0 313 171 1892 101 114 7 chr4 154393416 154393846 -29894816 + LTR14B LTR ERVK 18 608 0 726 142 0 0 chr4 154393846 154393955 -29894707 - THE1C LTR MaLR -266 109 1 377 326 0 43 chr4 154394235 154394376 -29894286 - MLT1K LTR MaLR -317 271 137 976 144 0 0 chr4 154395304 154395450 -29893212 - AluSc SINE Alu -29 280 135 21 36 0 0 chr4 154397405 154397433 -29891229 + AT_rich Low_complexity Low_complexity 1 28 0 761 130 68 31 chr4 154397496 154397657 -29891005 - L1P4 LINE L1 -601 5565 5399 23 0 0 0 chr4 154397846 154397869 -29890793 + AT_rich Low_complexity Low_complexity 1 23 0 194 247 13 0 chr4 154398743 154398820 -29889842 + GA-rich Low_complexity Low_complexity 2 79 0 400 279 77 55 chr4 154398946 154399129 -29889533 - MIR SINE MIR -25 237 51 948 207 28 9 chr4 154399973 154400186 -29888476 + MER8 DNA MER2_type 21 237 -2 1454 181 9 53 chr4 154400302 154400644 -29888018 + MLT1B LTR MaLR 64 390 0 642 335 72 44 chr4 154400644 154401624 -29887038 - ERVL LTR ERVL -1166 4488 3465 2011 93 4 0 chr4 154401624 154401882 -29886780 - AluSp SINE Alu -54 259 1 642 335 72 44 chr4 154401882 154402007 -29886655 - ERVL LTR ERVL -2189 3465 3345 1732 279 36 14 chr4 154402083 154403439 -29885223 - ERVL LTR ERVL -1906 3090 1665 312 367 0 7 chr4 154403569 154403716 -29884946 - ERVL LTR ERVL -3569 1427 1282 1237 286 79 30 chr4 154403716 154404198 -29884464 + MLT1G LTR MaLR 1 478 -117 268 296 45 8 chr4 154404468 154404600 -29884062 - ERVL LTR ERVL -3860 1136 1000 1334 93 26 0 chr4 154405428 154405621 -29883041 + AluSp SINE Alu 114 311 -2 691 189 0 70 chr4 154406096 154406125 -29882537 - FLAM_A SINE Alu -169 133 104 2213 123 7 0 chr4 154406125 154406427 -29882235 + AluSx SINE Alu 1 304 -8 691 189 0 70 chr4 154406427 154406540 -29882122 - FLAM_A SINE Alu -198 104 1 418 314 97 41 chr4 154406752 154407042 -29881620 - L2 LINE L2 0 3272 2967 244 129 0 65 chr4 154409212 154409274 -29879388 + (CATATA)n Simple_repeat Simple_repeat 5 62 0 216 231 19 0 chr4 154410118 154410170 -29878492 + (TATG)n Simple_repeat Simple_repeat 3 55 0 2285 92 0 0 chr4 154410436 154410731 -29877931 - AluY SINE Alu -16 295 1 2077 105 3 34 chr4 154411370 154411666 -29876996 + AluSq SINE Alu 6 292 -21 386 245 85 57 chr4 154414605 154414817 -29873845 + L1ME LINE L1 5562 5779 -342 1972 103 7 68 chr4 154415015 154415325 -29873337 - AluSx SINE Alu -21 291 1 845 245 70 72 chr4 154415948 154416464 -29872198 - L2 LINE L2 -4 3309 2761 823 123 118 18 chr4 154416464 154416634 -29872028 - MER53 DNA DNA 0 189 3 845 245 70 72 chr4 154416634 154416771 -29871891 - L2 LINE L2 -552 2761 2625 1839 286 81 53 chr4 154416782 154417821 -29870841 - L2 LINE L2 -997 2317 1250 21 36 0 0 chr4 154419270 154419298 -29869364 + AT_rich Low_complexity Low_complexity 1 28 0 401 285 58 72 chr4 154419605 154419812 -29868850 - HAL1b LINE L1 -784 564 361 571 167 25 2 chr4 154420105 154420344 -29868318 + AluJ SINE Alu 5 306 -6 32 57 0 0 chr4 154420904 154420957 -29867705 + AT_rich Low_complexity Low_complexity 1 53 0 24 53 0 0 chr4 154420992 154421030 -29867632 + AT_rich Low_complexity Low_complexity 1 38 0 753 298 54 52 chr4 154421168 154421615 -29867047 - MER20B DNA MER1_type -273 510 63 203 253 200 0 chr4 154422537 154422612 -29866050 - MIR3 SINE MIR -7 201 112 470 261 155 19 chr4 154424447 154424608 -29864054 - MIR SINE MIR -66 196 14 1267 112 0 0 chr4 154424631 154424800 -29863862 + AluSq SINE Alu 131 299 -14 652 237 58 12 chr4 154425856 154426029 -29862633 + MIR SINE MIR 38 218 -44 1364 238 83 19 chr4 154426102 154426535 -29862127 + MER63 DNA MER1_type 600 1060 0 265 339 26 35 chr4 154426576 154426691 -29861971 - MIR SINE MIR -118 144 31 347 370 57 15 chr4 154428305 154428567 -29860095 - L2 LINE L2 -557 2757 2485 7851 180 40 60 chr4 154429937 154431727 -29856935 + MER52A LTR ERV1 1 1755 0 263 344 99 8 chr4 154431838 154431969 -29856693 - MIR SINE MIR -109 153 11 717 263 105 50 chr4 154432281 154432604 -29856058 + LTR16A LTR ERVL 59 399 -51 617 151 0 50 chr4 154433050 154433169 -29855493 + L1PA16 LINE L1 6054 6166 0 231 247 39 65 chr4 154433895 154433972 -29854690 - MIR3 SINE MIR -36 172 98 440 310 70 15 chr4 154434763 154434963 -29853699 - MIR SINE MIR -2 260 50 22 0 0 0 chr4 154437197 154437219 -29851443 + AT_rich Low_complexity Low_complexity 1 22 0 2029 251 82 82 chr4 154437227 154438114 -29850548 + L1MDa LINE L1 18 904 -5636 992 209 5 5 chr4 154438147 154438338 -29850324 + AluSx SINE Alu 3 193 -119 3973 203 109 48 chr4 154438345 154439634 -29849028 + L1MDa LINE L1 1031 2398 -4142 475 316 38 24 chr4 154439633 154439842 -29848820 + L1MD2 LINE L1 5932 6143 -216 * 447 248 26 0 chr4 154439841 154439958 -29848704 + L1MD3 LINE L1 7832 7951 -44 * 2362 94 3 0 chr4 154440321 154440630 -29848032 - AluSp SINE Alu -3 310 1 250 243 40 40 chr4 154440990 154441064 -29847598 + L2 LINE L2 3231 3304 -9 212 232 0 29 chr4 154441089 154441158 -29847504 + GA-rich Low_complexity Low_complexity 2 68 0 25 51 0 0 chr4 154441172 154441211 -29847451 + AT_rich Low_complexity Low_complexity 1 39 0 966 303 87 12 chr4 154442731 154443134 -29845528 + LTR16A LTR ERVL 18 450 0 608 320 43 23 chr4 154443643 154443899 -29844763 - LTR16A1 LTR ERVL -26 431 171 360 152 0 0 chr4 154443902 154443968 -29844694 + (TG)n Simple_repeat Simple_repeat 2 67 0 207 0 0 0 chr4 154444102 154444125 -29844537 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1827 226 81 34 chr4 154444245 154444775 -29843887 + MLT1F1 LTR MaLR 13 567 0 272 298 119 30 chr4 154445088 154445256 -29843406 + MIR SINE MIR 11 193 -69 1164 289 75 25 chr4 154445256 154445847 -29842815 + MER20B DNA MER1_type 1 620 -163 632 307 11 34 chr4 154445986 154446250 -29842412 - MIR SINE MIR -4 258 1 5425 138 15 2 chr4 154447253 154448095 -29840567 - Tigger2 DNA MER2_type -1537 1181 329 2334 93 0 3 chr4 154448270 154448581 -29840081 + AluY SINE Alu 1 310 -1 470 350 5 49 chr4 154448595 154448818 -29839844 + MIR SINE MIR 6 218 -44 399 375 71 19 chr4 154448853 154449122 -29839540 + L3 LINE CR1 1288 1570 -7 252 345 35 0 chr4 154449776 154449863 -29838799 - L2 LINE L2 0 3272 3183 25 51 0 0 chr4 154450233 154450272 -29838390 + AT_rich Low_complexity Low_complexity 1 39 0 440 213 142 89 chr4 154451972 154452110 -29836552 - MER112 DNA MER1_type -12 248 92 261 0 0 0 chr4 154452110 154452139 -29836523 + (TA)n Simple_repeat Simple_repeat 2 30 0 440 213 142 89 chr4 154452139 154452225 -29836437 - MER112 DNA MER1_type -168 92 12 233 329 246 6 chr4 154452296 154452463 -29836199 - MIR SINE MIR -5 257 51 206 179 26 26 chr4 154453050 154453128 -29835534 + GA-rich Low_complexity Low_complexity 3 80 0 21 57 0 0 chr4 154453185 154453220 -29835442 + AT_rich Low_complexity Low_complexity 1 35 0 26 64 0 0 chr4 154454851 154454898 -29833764 + AT_rich Low_complexity Low_complexity 1 47 0 534 184 5 135 chr4 154454944 154455129 -29833533 + L1MD2 LINE L1 6182 6342 -17 229 316 179 12 chr4 154455206 154455374 -29833288 + MIR SINE MIR 66 261 -1 1706 126 21 164 chr4 154455517 154455532 -29833130 - MER57A LTR ERV1 0 403 387 2224 104 0 3 chr4 154455532 154455841 -29832821 + AluY SINE Alu 2 309 -2 1706 126 21 164 chr4 154455841 154456084 -29832578 - MER57A LTR ERV1 -16 387 111 1370 116 0 46 chr4 154456084 154456325 -29832337 + MER30 DNA MER1_type 1 230 0 1706 126 21 164 chr4 154456325 154456486 -29832176 - MER57A LTR ERV1 -292 111 -71 2064 96 0 7 chr4 154456486 154456766 -29831896 + AluSx SINE Alu 3 280 -32 253 0 0 51 chr4 154456769 154456808 -29831854 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1706 126 21 164 chr4 154456808 154456850 -29831812 - MER57A LTR ERV1 -354 49 3 23 0 0 0 chr4 154458738 154458761 -29829901 + AT_rich Low_complexity Low_complexity 1 23 0 3156 182 56 31 chr4 154459316 154460025 -29828637 + LTR8A LTR ERV1 1 727 0 2813 135 24 11 chr4 154460372 154460831 -29827831 + MER4C LTR ERV1 1 465 0 297 319 92 7 chr4 154460831 154460972 -29827690 + HAL1 LINE L1 105 257 -2250 357 82 0 0 chr4 154461118 154461167 -29827495 + (CA)n Simple_repeat Simple_repeat 2 50 0 300 200 56 22 chr4 154461320 154461410 -29827252 + HAL1 LINE L1 737 829 -1678 1362 185 55 0 chr4 154461584 154461876 -29826786 - Tigger2 DNA MER2_type -2410 308 1 2432 57 0 0 chr4 154461908 154462207 -29826455 + AluY SINE Alu 2 300 -11 205 301 0 14 chr4 154462269 154462342 -29826320 + (TG)n Simple_repeat Simple_repeat 1 72 0 34 42 0 0 chr4 154462826 154462874 -29825788 + AT_rich Low_complexity Low_complexity 1 48 0 246 224 164 26 chr4 154463348 154463500 -29825162 + L1ME LINE L1 5717 5889 -232 2132 141 0 0 chr4 154463620 154463932 -29824730 + AluSx SINE Alu 1 312 0 2305 79 0 13 chr4 154465591 154465895 -29822767 + AluY SINE Alu 1 300 -11 201 339 102 17 chr4 154466409 154466527 -29822135 - MIR3 SINE MIR -40 168 41 218 348 42 25 chr4 154466580 154466698 -29821964 - L2 LINE L2 -245 3027 2908 2028 137 7 10 chr4 154466945 154467252 -29821410 + AluSx SINE Alu 1 306 -6 201 317 122 46 chr4 154467337 154467665 -29820997 - L2 LINE L2 -807 2507 2155 277 245 151 9 chr4 154467981 154468087 -29820575 + L3 LINE CR1 817 937 -640 506 276 164 0 chr4 154468119 154468271 -29820391 - MER5A DNA MER1_type 0 189 13 279 330 10 10 chr4 154468283 154468383 -29820279 + L3 LINE CR1 962 1061 -516 210 290 0 58 chr4 154468671 154468740 -29819922 - MIR3 SINE MIR -17 191 127 182 233 17 0 chr4 154472118 154472178 -29816484 + GA-rich Low_complexity Low_complexity 2 62 0 26 82 0 0 chr4 154472318 154472379 -29816283 + AT_rich Low_complexity Low_complexity 1 61 0 1230 106 5 0 chr4 154472459 154472648 -29816014 - L1MA2 LINE L1 -2 6302 6113 361 281 84 10 chr4 154472649 154472852 -29815810 + HAL1b LINE L1 853 1070 -278 2162 130 19 17 chr4 154472978 154473340 -29815322 + THE1C LTR MaLR 1 363 -12 230 338 73 13 chr4 154473458 154473609 -29815053 - MLT1H LTR MaLR -292 257 98 3039 178 69 12 chr4 154473857 154474526 -29814136 - L1MB7 LINE L1 0 6184 5478 1977 213 88 9 chr4 154474503 154475057 -29813605 - L1MB7 LINE L1 -947 5199 4602 * 209 250 0 94 chr4 154475828 154475892 -29812770 - MIR3 SINE MIR -40 168 111 252 375 23 43 chr4 154476522 154476778 -29811884 - L2 LINE L2 -588 2726 2476 1314 221 40 23 chr4 154476803 154477151 -29811511 + MLT1A1 LTR MaLR 1 354 -11 225 0 0 0 chr4 154478457 154478482 -29810180 + (TG)n Simple_repeat Simple_repeat 2 26 0 21 57 0 0 chr4 154478605 154478640 -29810022 + AT_rich Low_complexity Low_complexity 1 35 0 308 214 67 11 chr4 154478664 154478753 -29809909 + MER103 DNA DNA 22 115 -51 189 0 0 0 chr4 154481207 154481228 -29807434 + (A)n Simple_repeat Simple_repeat 1 21 0 566 208 81 13 chr4 154482160 154482309 -29806353 - MIR SINE MIR -5 257 99 24 53 0 0 chr4 154483294 154483332 -29805330 + AT_rich Low_complexity Low_complexity 1 38 0 613 311 98 8 chr4 154483530 154483765 -29804897 - MIR SINE MIR -6 256 1 219 295 0 0 chr4 154484397 154484458 -29804204 - L3 LINE CR1 -367 1210 1150 27 62 0 0 chr4 154486778 154486826 -29801836 + AT_rich Low_complexity Low_complexity 1 48 0 21 36 0 0 chr4 154490196 154490224 -29798438 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 154491075 154491096 -29797566 + AT_rich Low_complexity Low_complexity 1 21 0 301 197 268 36 chr4 154491132 154491412 -29797250 + L1M3 LINE L1 5217 5537 -634 252 384 67 35 chr4 154491565 154491906 -29796756 + L2 LINE L2 2547 2898 -416 191 250 0 0 chr4 154492312 154492356 -29796306 - L2 LINE L2 -9 3304 3261 376 344 27 27 chr4 154494280 154494463 -29794199 + MIR3 SINE MIR 20 202 -6 1849 176 23 30 chr4 154494850 154495243 -29793419 + MLT1B LTR MaLR 1 390 0 1976 143 3 7 chr4 154495354 154495662 -29793000 + AluSx SINE Alu 4 310 -2 1510 268 61 34 chr4 154495866 154496542 -29792120 + HAL1 LINE L1 1814 2507 0 249 33 0 0 chr4 154497005 154497035 -29791627 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 195 345 70 14 chr4 154497093 154497235 -29791427 + MER5A DNA MER1_type 34 183 -6 22 56 0 0 chr4 154500239 154500275 -29788387 + AT_rich Low_complexity Low_complexity 1 36 0 197 238 0 0 chr4 154501038 154501080 -29787582 - L2 LINE L2 -21 3251 3210 252 281 0 0 chr4 154502323 154502380 -29786282 - L2 LINE L2 -14 3299 3243 38 39 0 0 chr4 154502990 154503042 -29785620 + AT_rich Low_complexity Low_complexity 1 52 0 1483 271 66 35 chr4 154504564 154505325 -29783337 + MER20B DNA MER1_type 1 784 0 357 298 38 13 chr4 154505487 154505645 -29783017 + MIR SINE MIR 94 255 -7 254 169 104 26 chr4 154506583 154506660 -29782002 + Charlie8 DNA MER1_type 94 176 -2241 305 291 73 9 chr4 154506712 154506822 -29781840 + L2 LINE L2 3197 3313 0 329 327 16 52 chr4 154507070 154507318 -29781344 - L2 LINE L2 -1177 2137 1899 396 0 0 0 chr4 154508125 154508169 -29780493 + (CA)n Simple_repeat Simple_repeat 2 45 0 29 20 0 39 chr4 154509252 154509283 -29779379 + AT_rich Low_complexity Low_complexity 1 31 -18 538 244 66 54 chr4 154509283 154509541 -29779121 - MIR SINE MIR 0 262 2 29 20 0 39 chr4 154509541 154509560 -29779102 + AT_rich Low_complexity Low_complexity 31 49 0 21 82 0 0 chr4 154509711 154509760 -29778902 + AT_rich Low_complexity Low_complexity 1 49 0 424 259 70 90 chr4 154509995 154510350 -29778312 + L1M4 LINE L1 3139 3486 -2660 281 210 0 32 chr4 154510360 154510422 -29778240 + FLAM SINE Alu 57 116 -17 2286 97 0 0 chr4 154510578 154510876 -29777786 + AluSq SINE Alu 1 298 -15 729 163 7 30 chr4 154511027 154511162 -29777500 + Tigger1 DNA MER2_type 27 158 -2260 665 184 135 14 chr4 154511169 154511318 -29777344 - Tigger1 DNA MER2_type -1752 666 484 2363 32 63 0 chr4 154511318 154511603 -29777059 - AluY SINE Alu -8 303 1 665 184 135 14 chr4 154511603 154511660 -29777002 - Tigger1 DNA MER2_type -1934 484 435 9261 132 59 15 chr4 154511760 154513296 -29775366 + Tigger1 DNA MER2_type 816 2418 0 434 315 92 37 chr4 154513375 154513670 -29774992 + L1M4 LINE L1 3878 4188 -1958 408 71 0 0 chr4 154513823 154513879 -29774783 + (TG)n Simple_repeat Simple_repeat 1 56 0 1542 161 17 51 chr4 154513898 154514190 -29774472 - AluJo SINE Alu -22 290 9 1813 148 3 7 chr4 154514202 154514506 -29774156 - AluSx SINE Alu -9 303 1 349 256 133 0 chr4 154514513 154514603 -29774059 - L2 LINE L2 -773 2541 2440 1136 85 6 11 chr4 154514747 154514923 -29773739 + THE1C-int LTR MaLR 1406 1580 0 2464 115 5 24 chr4 154514923 154515263 -29773399 + THE1C LTR MaLR 1 335 -40 1887 158 10 7 chr4 154515263 154515566 -29773096 - AluSx SINE Alu -8 304 1 2464 115 5 24 chr4 154515566 154515607 -29773055 + THE1C LTR MaLR 335 375 0 1633 194 57 14 chr4 154516814 154517164 -29771498 + MLT1A1 LTR MaLR 1 365 0 1216 228 134 12 chr4 154517522 154517939 -29770723 + MER110A LTR ERV1 1 468 0 1010 269 125 48 chr4 154518350 154519176 -29769486 + L1ME LINE L1 2238 3202 -2944 1528 191 30 61 chr4 154519176 154519616 -29769046 + LTR37A LTR ERV1 1 426 0 1010 269 125 48 chr4 154519616 154519878 -29768784 + L1ME LINE L1 3202 3442 -2704 718 275 111 63 chr4 154519880 154520545 -29768117 + L1MC4 LINE L1 7208 7904 -138 575 265 11 0 chr4 154520698 154520879 -29767783 + L1MD3 LINE L1 6934 7116 -879 338 279 0 0 chr4 154520884 154520970 -29767692 + MLT1F1 LTR MaLR 45 130 -437 2340 193 35 8 chr4 154520986 154521503 -29767159 + L1MD3 LINE L1 7426 7956 -39 500 255 135 43 chr4 154521509 154522137 -29766525 + L1ME LINE L1 4648 5607 -555 237 338 21 14 chr4 154522206 154522351 -29766311 + L1ME LINE L1 5728 5873 -297 694 251 37 23 chr4 154522595 154522810 -29765852 + LTR40b LTR ERVL 245 462 0 23 0 0 0 chr4 154523741 154523764 -29764898 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr4 154525040 154525062 -29763600 + AT_rich Low_complexity Low_complexity 1 22 0 279 273 23 0 chr4 154525064 154525152 -29763510 + MER103 DNA DNA 64 153 -13 21 0 0 0 chr4 154525333 154525354 -29763308 + AT_rich Low_complexity Low_complexity 1 21 0 2253 59 42 0 chr4 154525431 154525720 -29762942 + AluYa5 SINE Alu 8 308 -3 216 67 0 0 chr4 154525752 154525782 -29762880 + (CAA)n Simple_repeat Simple_repeat 2 31 0 1582 248 94 21 chr4 154526318 154526892 -29761770 + MLT1E3 LTR MaLR 1 624 0 24 0 0 0 chr4 154527421 154527445 -29761217 + AT_rich Low_complexity Low_complexity 1 24 0 1949 160 0 10 chr4 154527561 154527873 -29760789 + AluJb SINE Alu 3 311 -1 22 35 0 0 chr4 154529766 154529795 -29758867 + AT_rich Low_complexity Low_complexity 1 29 0 238 276 23 23 chr4 154531697 154531784 -29756878 + MLT1K LTR MaLR 485 571 -17 229 313 54 36 chr4 154535547 154535659 -29753003 - MIR SINE MIR -6 256 143 1624 134 36 0 chr4 154536483 154536736 -29751926 - AluSg SINE Alu -48 262 1 449 211 33 11 chr4 154537398 154537488 -29751174 + L2 LINE L2 3221 3312 -1 321 100 0 0 chr4 154538551 154538601 -29750061 + (CA)n Simple_repeat Simple_repeat 1 50 0 23 33 0 0 chr4 154538726 154538756 -29749906 + AT_rich Low_complexity Low_complexity 1 30 0 3047 52 0 0 chr4 154539325 154539708 -29748954 - L1PA4 LINE L1 -3 6152 5770 549 185 110 23 chr4 154539843 154539895 -29748767 - L1MA9 LINE L1 -116 6196 6150 216 67 0 0 chr4 154539895 154539925 -29748737 + (TG)n Simple_repeat Simple_repeat 2 31 0 549 185 110 23 chr4 154539925 154540045 -29748617 - L1MA9 LINE L1 -162 6150 6009 23 33 0 0 chr4 154540471 154540501 -29748161 + AT_rich Low_complexity Low_complexity 1 30 0 1053 146 6 0 chr4 154541242 154541407 -29747255 - AluSx SINE Alu -11 301 136 422 167 0 0 chr4 154541407 154541479 -29747183 - AluSx SINE Alu -241 72 1 2303 75 0 10 chr4 154542516 154542811 -29745851 + AluY SINE Alu 1 292 -19 23 0 0 0 chr4 154543234 154543257 -29745405 + AT_rich Low_complexity Low_complexity 1 23 0 1463 201 32 3 chr4 154546213 154546497 -29742165 + AluJo SINE Alu 1 292 -20 1527 211 0 10 chr4 154548070 154548382 -29740280 - AluJb SINE Alu -3 309 1 1588 123 143 0 chr4 154549000 154549244 -29739418 + AluSx SINE Alu 1 279 -33 406 282 99 8 chr4 154549757 154549909 -29738753 - MIR SINE MIR 0 262 99 1191 107 13 62 chr4 154550467 154550692 -29737970 - L1MA3 LINE L1 0 6305 6092 439 302 143 35 chr4 154551166 154551481 -29737181 + L2 LINE L2 2952 3300 -13 225 216 20 0 chr4 154551486 154551537 -29737125 + L2 LINE L2 3262 3313 0 1301 139 0 19 chr4 154551881 154552089 -29736573 - MER46A DNA MER2_type 0 236 33 236 353 88 0 chr4 154552328 154552430 -29736232 + MIR SINE MIR 34 144 -118 4822 142 50 7 chr4 154553203 154554039 -29734623 + Tigger1 DNA MER2_type 651 1522 -896 4003 175 12 35 chr4 154554040 154554772 -29733890 + Tigger1 DNA MER2_type 1635 2349 -69 1992 121 38 62 chr4 154554772 154554950 -29733712 + THE1B LTR MaLR 1 182 -182 1815 107 15 0 chr4 154554950 154555211 -29733451 + AluSx SINE Alu 36 300 -12 1992 121 38 62 chr4 154555211 154555405 -29733257 + THE1B LTR MaLR 182 364 0 4003 175 12 35 chr4 154555405 154555474 -29733188 + Tigger1 DNA MER2_type 2349 2418 0 2394 89 0 0 chr4 154556168 154556471 -29732191 + AluY SINE Alu 1 303 -8 2394 89 0 0 chr4 154557079 154557382 -29731280 + AluY SINE Alu 1 303 -8 273 57 0 0 chr4 154559426 154559461 -29729201 + (CA)n Simple_repeat Simple_repeat 1 35 0 1118 226 44 7 chr4 154559886 154560156 -29728506 + AluJo SINE Alu 1 280 -32 243 0 0 0 chr4 154560157 154560184 -29728478 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 561 251 118 37 chr4 154561087 154561274 -29727388 + MLT1L LTR MaLR 410 611 -4 1489 171 56 14 chr4 154562011 154562297 -29726365 + AluJb SINE Alu 3 300 -12 1287 177 24 4 chr4 154565212 154565461 -29723201 - MER7A DNA MER2_type 0 337 84 971 41 0 0 chr4 154565462 154565584 -29723078 + AluYa5/8 SINE Alu 188 309 -2 349 238 0 48 chr4 154565584 154565668 -29722994 - MER7A DNA MER2_type -267 79 2 241 245 276 0 chr4 154566351 154566449 -29722213 + MIR SINE MIR 44 168 -94 23 0 0 0 chr4 154566909 154566932 -29721730 + AT_rich Low_complexity Low_complexity 1 23 0 1321 162 114 26 chr4 154567608 154567759 -29720903 - AluJo SINE Alu -16 296 160 240 35 0 0 chr4 154567759 154567788 -29720874 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1321 162 114 26 chr4 154567788 154567908 -29720754 - AluJo SINE Alu -152 160 1 237 224 60 45 chr4 154569388 154569455 -29719207 + MER94 DNA DNA 2 69 -65 2289 95 3 0 chr4 154569623 154569918 -29718744 + AluSg SINE Alu 1 296 -14 22 0 0 0 chr4 154570469 154570491 -29718171 + AT_rich Low_complexity Low_complexity 1 22 0 292 300 77 35 chr4 154570555 154570725 -29717937 - MIR SINE MIR -7 255 79 648 169 65 0 chr4 154571557 154571681 -29716981 - MER2 DNA MER2_type -173 172 41 23 0 0 0 chr4 154571823 154571846 -29716816 + AT_rich Low_complexity Low_complexity 1 23 0 2070 127 0 0 chr4 154571850 154572134 -29716528 + AluSx SINE Alu 5 288 -24 421 313 21 0 chr4 154572138 154572282 -29716380 + L2 LINE L2 1869 2015 -1299 1668 155 32 11 chr4 154572875 154573153 -29715509 + AluJb SINE Alu 4 287 -25 615 121 0 0 chr4 154573182 154573281 -29715381 + (GGGA)n Simple_repeat Simple_repeat 3 101 0 207 217 101 93 chr4 154573405 154573534 -29715128 + MER5B DNA MER1_type 4 133 -45 243 0 0 0 chr4 154573909 154573936 -29714726 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1609 161 39 3 chr4 154573940 154574225 -29714437 - AluSx SINE Alu -17 295 1 196 316 34 51 chr4 154574246 154574423 -29714239 - L2 LINE L2 -968 2346 2173 305 325 25 0 chr4 154574537 154574657 -29714005 - L1MC4 LINE L1 0 8042 7920 298 212 45 0 chr4 154574949 154575015 -29713647 - L1ME LINE L1 -349 5815 5747 180 0 0 0 chr4 154575399 154575419 -29713243 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 252 0 0 0 chr4 154575418 154575446 -29713216 + (TG)n Simple_repeat Simple_repeat 2 29 0 252 292 67 33 chr4 154576449 154576569 -29712093 + MIR SINE MIR 86 209 -53 537 234 161 61 chr4 154576810 154577071 -29711591 + L2 LINE L2 3019 3305 -8 249 351 11 0 chr4 154577391 154577485 -29711177 - MIR SINE MIR 0 262 168 245 273 30 91 chr4 154577571 154577703 -29710959 - MIR SINE MIR -118 144 21 218 207 35 46 chr4 154578149 154578236 -29710426 + (CATATA)n Simple_repeat Simple_repeat 3 88 0 2141 120 3 0 chr4 154580015 154580307 -29708355 + AluSg SINE Alu 1 293 -17 24 53 0 0 chr4 154580360 154580398 -29708264 + AT_rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr4 154580518 154580543 -29708119 + AT_rich Low_complexity Low_complexity 1 25 0 1616 180 48 70 chr4 154580926 154581409 -29707253 + L1MB7 LINE L1 5706 6177 -7 274 296 168 6 chr4 154581669 154581848 -29706814 + L1ME4a LINE L1 5848 6055 -66 1478 241 32 35 chr4 154581854 154582315 -29706347 + MLT1C LTR MaLR 1 460 -7 431 203 42 25 chr4 154582335 154582453 -29706209 - L1MD3 LINE L1 -10 7985 7866 2569 222 16 15 chr4 154582482 154583256 -29705406 - L1MD2 LINE L1 -515 5844 5069 569 320 28 32 chr4 154583629 154583879 -29704783 - MIR SINE MIR 0 262 14 182 344 56 33 chr4 154584418 154584508 -29704154 + L2 LINE L2 3198 3289 -24 193 95 24 24 chr4 154584618 154584660 -29704002 + (TTCC)n Simple_repeat Simple_repeat 4 45 0 1682 150 45 8 chr4 154587663 154587930 -29700732 + AluSx SINE Alu 25 301 -11 336 318 36 36 chr4 154589517 154589794 -29698868 + MER89-int LTR ERV1 4399 4675 -2126 2262 143 9 0 chr4 154590577 154590912 -29697750 + MER1B DNA MER1_type 1 338 -1 2211 169 33 19 chr4 154591993 154592413 -29696249 + MSTB LTR MaLR 1 426 0 273 257 191 26 chr4 154592494 154592646 -29696016 - MIR SINE MIR -65 197 21 480 35 0 0 chr4 154592810 154592868 -29695794 + (CA)n Simple_repeat Simple_repeat 2 59 0 292 274 0 14 chr4 154593641 154593714 -29694948 + GA-rich Low_complexity Low_complexity 3 74 0 330 275 0 22 chr4 154593843 154593934 -29694728 - MIR3 SINE MIR -7 201 113 183 42 0 0 chr4 154594060 154594084 -29694578 + (CA)n Simple_repeat Simple_repeat 2 25 0 411 56 0 0 chr4 154594321 154594375 -29694287 + (TG)n Simple_repeat Simple_repeat 2 55 0 242 405 0 0 chr4 154594495 154594584 -29694078 - L2 LINE L2 -12 3260 3172 753 310 63 19 chr4 154595053 154595508 -29693154 + L2 LINE L2 2546 3017 -296 183 360 13 13 chr4 154595964 154596039 -29692623 - L2 LINE L2 -61 3211 3137 353 354 76 6 chr4 154596465 154596623 -29692039 - L2 LINE L2 -3 3269 3101 860 247 88 73 chr4 154596709 154597118 -29691544 - LTR16C LTR ERVL 0 491 77 518 304 130 31 chr4 154597534 154597925 -29690737 - L2 LINE L2 -736 2578 2149 1821 163 10 7 chr4 154597938 154598239 -29690423 + AluJb SINE Alu 5 306 -6 624 150 0 109 chr4 154598527 154598674 -29689988 + LTR1 LTR ERV1 1 131 -654 9737 102 8 0 chr4 154598694 154600034 -29688628 - THE1A-int LTR MaLR -230 1350 1 2381 118 8 8 chr4 154600034 154600389 -29688273 - THE1A LTR MaLR 0 355 1 679 128 10 0 chr4 154600432 154600534 -29688128 - FLAM_A SINE Alu -18 124 22 193 209 134 0 chr4 154602440 154602507 -29686155 - L2 LINE L2 -309 2963 2888 2222 104 13 3 chr4 154602751 154603058 -29685604 + AluSx SINE Alu 1 310 -2 399 42 0 0 chr4 154604473 154604521 -29684141 - L1P LINE L1 -1584 4562 4515 4719 24 4 0 chr4 154604521 154605073 -29683589 + L1PA4 LINE L1 5601 6155 0 210 37 0 0 chr4 154605084 154605111 -29683551 + (CA)n Simple_repeat Simple_repeat 2 28 0 313 269 87 27 chr4 154605162 154605311 -29683351 + MIR SINE MIR 34 191 -71 2110 187 28 39 chr4 154605430 154605797 -29682865 - MER82 DNA MER2_type 0 653 290 1673 160 60 78 chr4 154605797 154606179 -29682483 + THE1C LTR MaLR 1 375 0 2110 187 28 39 chr4 154606179 154606271 -29682391 - MER82 DNA MER2_type -363 290 199 3717 146 31 11 chr4 154606271 154606937 -29681725 - Tigger3(Golem) DNA MER2_type 0 3029 2350 251 276 0 0 chr4 154607037 154607095 -29681567 - MER82 DNA MER2_type -586 67 10 209 329 129 0 chr4 154607104 154607174 -29681488 - L2 LINE L2 -36 3277 3199 22 0 0 0 chr4 154607328 154607350 -29681312 + AT_rich Low_complexity Low_complexity 1 22 0 398 375 99 25 chr4 154607958 154608513 -29680149 - L2 LINE L2 -609 2705 2110 1497 189 20 14 chr4 154608689 154608986 -29679676 + AluJb SINE Alu 1 299 -13 242 323 25 19 chr4 154609453 154609611 -29679051 + L1ME LINE L1 5617 5775 -346 34 55 0 0 chr4 154610092 154610147 -29678515 + AT_rich Low_complexity Low_complexity 1 55 0 1824 211 70 27 chr4 154611881 154612365 -29676297 + Charlie1b DNA MER1_type 5 509 -14 212 250 0 0 chr4 154612372 154612416 -29676246 + L2 LINE L2 3266 3309 -4 249 215 66 0 chr4 154613937 154614058 -29674604 + (TA)n Simple_repeat Simple_repeat 2 130 0 205 407 0 0 chr4 154614239 154614320 -29674342 - L3 LINE CR1 -14 1563 1483 522 199 179 13 chr4 154614640 154614791 -29673871 + MER5A DNA MER1_type 12 187 -2 325 375 18 10 chr4 154615000 154615167 -29673495 - MIR SINE MIR -65 143 5 307 316 209 10 chr4 154615368 154615574 -29673088 + MIR SINE MIR 12 258 -4 286 262 306 5 chr4 154615938 154616144 -29672518 + L2 LINE L2 2480 2747 -567 * 655 291 117 34 chr4 154616135 154616544 -29672118 + L2 LINE L2 2869 3311 -2 615 62 0 0 chr4 154616581 154616661 -29672001 + (TA)n Simple_repeat Simple_repeat 1 80 0 264 306 100 31 chr4 154617930 154618090 -29670572 + MIR3 SINE MIR 14 184 -24 338 265 113 47 chr4 154619875 154620132 -29668530 - L1ME4a LINE L1 -2 6119 5846 469 201 0 87 chr4 154621273 154621477 -29667185 + MER34B LTR ERV1 13 175 -390 504 270 28 53 chr4 154621611 154621896 -29666766 + MER34 LTR ERV1 281 565 0 195 333 0 0 chr4 154622159 154622213 -29666449 - L2 LINE L2 -40 3273 3220 341 245 11 32 chr4 154622290 154622384 -29666278 - L2 LINE L2 -1 3312 3221 923 174 40 0 chr4 154626559 154626760 -29661902 + L1MA9 LINE L1 6104 6312 0 484 238 30 0 chr4 154627525 154627626 -29661036 + MER5A DNA MER1_type 9 112 -77 321 280 90 0 chr4 154632645 154632745 -29655917 + L2 LINE L2 3159 3267 -5 227 303 34 22 chr4 154632788 154632877 -29655785 + MIR SINE MIR 20 109 -153 1770 155 7 11 chr4 154633310 154633624 -29655038 + AluJb SINE Alu 1 313 0 309 37 9 102 chr4 154634513 154634621 -29654041 + (TA)n Simple_repeat Simple_repeat 1 98 0 229 202 164 87 chr4 154634855 154634959 -29653703 + MIR3 SINE MIR 81 192 -16 487 298 112 73 chr4 154635403 154635786 -29652876 - L2 LINE L2 -9 3304 2907 224 216 0 20 chr4 154640600 154640651 -29648011 + G-rich Low_complexity Low_complexity 5 54 0 42 65 0 0 chr4 154640875 154640952 -29647710 + GC_rich Low_complexity Low_complexity 1 77 0 371 265 101 90 chr4 154641226 154641494 -29647168 - L1M2 LINE L1 -5927 922 652 539 199 50 43 chr4 154641855 154641996 -29646666 - L2 LINE L2 -3 3310 3169 360 0 0 0 chr4 154643212 154643252 -29645410 + (TG)n Simple_repeat Simple_repeat 2 41 0 192 152 0 0 chr4 154644174 154644207 -29644455 + (CA)n Simple_repeat Simple_repeat 2 34 0 504 0 0 0 chr4 154644355 154644411 -29644251 + (TA)n Simple_repeat Simple_repeat 2 57 0 287 342 43 12 chr4 154645052 154645213 -29643449 + MIR3 SINE MIR 32 197 -11 472 323 30 6 chr4 154648074 154648241 -29640421 - MIR SINE MIR -84 178 8 265 350 82 19 chr4 154649007 154649213 -29639449 + L2 LINE L2 2618 2836 -478 1714 162 20 14 chr4 154649336 154649632 -29639030 - AluSx SINE Alu -14 298 1 675 312 69 9 chr4 154649689 154649920 -29638742 - MIR SINE MIR -6 256 12 22 70 0 0 chr4 154650353 154650396 -29638266 + AT_rich Low_complexity Low_complexity 1 43 0 21 82 0 0 chr4 154651616 154651665 -29636997 + AT_rich Low_complexity Low_complexity 1 49 0 218 182 0 0 chr4 154652107 154652151 -29636511 + GA-rich Low_complexity Low_complexity 2 45 0 186 309 43 21 chr4 154652153 154652247 -29636415 + MIR3 SINE MIR 108 203 -5 25 0 0 0 chr4 154652370 154652395 -29636267 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr4 154652803 154652832 -29635830 + AT_rich Low_complexity Low_complexity 1 29 0 201 245 19 38 chr4 154653572 154653625 -29635037 - L2 LINE L2 -27 3245 3194 * 337 354 63 35 chr4 154653616 154653983 -29634679 - L2 LINE L2 -1133 2181 1805 22 0 0 0 chr4 154653985 154654007 -29634655 + AT_rich Low_complexity Low_complexity 1 22 0 2447 58 3 10 chr4 154654007 154654320 -29634342 + AluY SINE Alu 1 311 0 1545 108 5 0 chr4 154654429 154654633 -29634029 - AluSp SINE Alu -103 210 6 2237 230 81 32 chr4 154654633 154655373 -29633289 - L1ME2 LINE L1 -6 6158 5383 1862 156 15 63 chr4 154655786 154656196 -29632466 + MLT1B LTR MaLR 1 390 0 552 266 5 0 chr4 154656274 154656462 -29632200 - L1ME2 LINE L1 -852 5294 5106 857 237 51 4 chr4 154656467 154656724 -29631938 - L1ME2 LINE L1 -1082 5064 4796 1476 151 12 8 chr4 154656749 154657007 -29631655 - Tigger5 DNA MER2_type -8 2315 2057 1413 247 75 20 chr4 154657057 154657615 -29631047 - L1ME2 LINE L1 -1346 4800 4212 1408 224 81 38 chr4 154657615 154657696 -29630966 + MLT1C LTR MaLR 1 77 -390 2169 136 13 31 chr4 154657696 154658078 -29630584 + THE1C LTR MaLR 1 375 0 1408 224 81 38 chr4 154658078 154658442 -29630220 + MLT1C LTR MaLR 77 465 -2 814 263 100 7 chr4 154658454 154658743 -29629919 - L1ME2 LINE L1 -1941 4205 3890 1131 137 66 0 chr4 154658750 154658932 -29629730 + MER2 DNA MER2_type 7 200 -145 1446 208 4 0 chr4 154658932 154659197 -29629465 - AluJo SINE Alu -8 304 39 622 191 61 34 chr4 154659197 154659344 -29629318 + MER2 DNA MER2_type 195 345 0 495 267 98 0 chr4 154659344 154659580 -29629082 - L1ME2 LINE L1 -2256 3890 3632 262 263 241 7 chr4 154659569 154659706 -29628956 - L1ME2 LINE L1 -3411 2735 2567 * 659 350 30 10 chr4 154659732 154660029 -29628633 + ERVL LTR ERVL 4500 4802 -962 946 295 136 3 chr4 154660791 154661093 -29627569 + LTR16C LTR ERVL 150 491 0 349 301 65 0 chr4 154661127 154661250 -29627412 - HERV16 LTR ERVL -2106 2890 2760 192 391 154 13 chr4 154661697 154661996 -29626666 + L2 LINE L2 2432 2772 -542 231 348 133 74 chr4 154662027 154662447 -29626215 + L2 LINE L2 2828 3272 0 1964 132 16 16 chr4 154662673 154662983 -29625679 + AluSx SINE Alu 1 310 -2 291 378 59 70 chr4 154664087 154664547 -29624115 - L2 LINE L2 0 3272 2818 1383 177 67 57 chr4 154664974 154665290 -29623372 - MSTA LTR MaLR -105 323 5 8993 160 58 11 chr4 154665292 154666870 -29621792 - MSTA-int LTR MaLR 0 1651 1 1833 197 71 17 chr4 154666870 154667276 -29621386 - MSTA LTR MaLR 0 428 1 436 388 8 4 chr4 154668953 154669195 -29619467 - L3 LINE CR1 -39 1538 1296 339 363 11 26 chr4 154669479 154669669 -29618993 - L3 LINE CR1 -291 1286 1100 1135 15 44 0 chr4 154669737 154669873 -29618789 - L1PA2 LINE L1 0 6155 6014 526 233 65 56 chr4 154669927 154670159 -29618503 - LTR37A LTR ERV1 0 426 193 307 104 39 104 chr4 154670153 154670230 -29618432 - LTR37A LTR ERV1 -354 72 1 * 21 100 0 0 chr4 154670893 154670963 -29617699 + AT_rich Low_complexity Low_complexity 1 70 0 1454 216 67 34 chr4 154671174 154671619 -29617043 - MLT1C LTR MaLR -2 465 6 258 32 0 0 chr4 154671794 154671825 -29616837 + (TAA)n Simple_repeat Simple_repeat 3 33 0 1613 234 67 8 chr4 154671938 154672376 -29616286 - MER110A LTR ERV1 0 468 39 271 366 15 30 chr4 154672775 154672909 -29615753 + MLT1I LTR MaLR 35 166 -243 21 0 0 0 chr4 154673553 154673574 -29615088 + AT_rich Low_complexity Low_complexity 1 21 0 280 149 15 15 chr4 154674807 154674874 -29613788 + (CA)n Simple_repeat Simple_repeat 2 68 0 182 43 21 64 chr4 154674890 154674937 -29613725 + (TAAAAA)n Simple_repeat Simple_repeat 3 47 0 58 47 0 0 chr4 154674938 154675024 -29613638 + AT_rich Low_complexity Low_complexity 1 86 0 219 140 0 0 chr4 154675180 154675230 -29613432 + (TA)n Simple_repeat Simple_repeat 2 51 0 21 89 0 0 chr4 154675334 154675390 -29613272 + AT_rich Low_complexity Low_complexity 1 56 0 279 354 90 28 chr4 154675595 154675739 -29612923 - MIR3 SINE MIR -55 153 1 245 29 0 29 chr4 154675918 154675953 -29612709 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 307 130 0 0 chr4 154675959 154676005 -29612657 - AluSp/q SINE Alu -20 283 238 1938 235 40 42 chr4 154676245 154676929 -29611733 - MER69 DNA AcHobo 0 2526 1845 467 276 16 0 chr4 154677320 154677443 -29611219 + MER90 LTR ERV1 244 368 -246 1210 321 35 8 chr4 154677443 154677817 -29610845 + LTR16B LTR ERVL 81 464 0 1260 335 81 32 chr4 154678065 154678933 -29609729 + ERVL LTR ERVL 3784 4693 -1071 593 204 9 0 chr4 154678984 154679097 -29609565 + MSTC LTR MaLR 1 114 -314 625 277 65 22 chr4 154679325 154679556 -29609106 - MIR SINE MIR -19 243 3 202 286 228 37 chr4 154679772 154679961 -29608701 + MIR SINE MIR 25 249 -13 25 65 0 0 chr4 154680036 154680082 -29608580 + AT_rich Low_complexity Low_complexity 1 46 0 22 56 0 0 chr4 154680848 154680884 -29607778 + AT_rich Low_complexity Low_complexity 1 36 0 26 30 0 0 chr4 154681053 154681086 -29607576 + AT_rich Low_complexity Low_complexity 1 33 0 1724 267 37 27 chr4 154681205 154681718 -29606944 + LTR40a LTR ERVL 1 518 -1 3212 88 5 0 chr4 154682557 154682988 -29605674 - MER57B LTR ERV1 -1 433 1 212 158 0 0 chr4 154683238 154683276 -29605386 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 206 368 34 43 chr4 154683277 154683394 -29605268 - L2 LINE L2 -4 3268 3153 21 0 0 0 chr4 154684738 154684759 -29603903 + AT_rich Low_complexity Low_complexity 1 21 0 421 128 40 8 chr4 154685235 154685360 -29603302 + (TTATA)n Simple_repeat Simple_repeat 1 129 0 42 20 0 0 chr4 154685385 154685434 -29603228 + AT_rich Low_complexity Low_complexity 1 49 0 269 242 0 15 chr4 154685504 154685570 -29603092 + MLT1J2 LTR MaLR 45 109 -341 330 250 36 131 chr4 154685697 154685865 -29602797 + MLT1J2 LTR MaLR 273 424 -26 261 326 68 38 chr4 154685896 154686028 -29602634 + L2 LINE L2 3137 3272 0 37 52 0 0 chr4 154686117 154686175 -29602487 + AT_rich Low_complexity Low_complexity 1 58 0 846 85 7 85 chr4 154686636 154686777 -29601885 + MER1B DNA MER1_type 209 338 -1 3622 186 64 10 chr4 154686777 154687565 -29601097 - L1HS LINE L1 -138 6206 5353 280 250 80 23 chr4 154689049 154689137 -29599525 + MLT1H LTR MaLR 136 228 -321 229 297 12 109 chr4 154690302 154690467 -29598195 + MLT1H-int LTR MaLR 1023 1171 -200 2579 129 41 2 chr4 154690569 154690981 -29597681 - MSTA LTR MaLR 0 428 1 289 259 45 62 chr4 154691115 154691227 -29597435 + MLT1H LTR MaLR 103 212 -337 200 139 0 47 chr4 154791651 154791694 -29496968 + (CA)n Simple_repeat Simple_repeat 2 42 0 16284 83 7 8 chr4 154792810 154795087 -29493575 + HERVL-A1 LTR ERVL 3381 5654 0 1150 58 0 0 chr4 154795087 154795241 -29493421 + MLT2A1 LTR ERVL 1 154 -290 574 110 46 55 chr4 154795247 154795356 -29493306 + MLT2A1 LTR ERVL 311 418 -35 1080 169 89 48 chr4 154795426 154795674 -29492988 - MSTA LTR MaLR 0 428 171 14263 164 103 43 chr4 154795676 154798847 -29489815 - L1M1 LINE L1 -4189 3376 16 7256 159 35 16 chr4 154798847 154800195 -29488467 - Tigger4(Zombi) DNA MER2_type -1356 1375 2 243 133 0 0 chr4 154800196 154800241 -29488421 + (TG)n Simple_repeat Simple_repeat 2 46 0 189 0 0 0 chr4 154800243 154800264 -29488398 + (GA)n Simple_repeat Simple_repeat 1 21 0 1071 237 37 113 chr4 154800267 154800457 -29488205 - MLT2B1 LTR ERVL -68 452 249 2280 143 20 3 chr4 154800457 154800813 -29487849 - THE1B LTR MaLR 0 364 3 9987 116 32 32 chr4 154800815 154802396 -29486266 - THE1B-int LTR MaLR 0 1580 1 2385 133 6 3 chr4 154802396 154802758 -29485904 - THE1B LTR MaLR 0 364 2 1071 237 37 113 chr4 154802758 154803052 -29485610 - MLT2B1 LTR ERVL -270 250 1 809 375 110 19 chr4 154803383 154804129 -29484533 - L2 LINE L2 -515 2799 1986 370 347 13 0 chr4 154804188 154804338 -29484324 - MIR SINE MIR -26 236 85 276 30 0 0 chr4 154804525 154804558 -29484104 + (CA)n Simple_repeat Simple_repeat 2 34 0 1667 130 16 0 chr4 154805785 154806032 -29482630 - AluSg SINE Alu -59 251 1 602 298 63 21 chr4 154806101 154806339 -29482323 + MIR SINE MIR 5 252 -10 2220 97 0 29 chr4 154806703 154807014 -29481648 + AluSg SINE Alu 1 302 -8 22 0 0 0 chr4 154807040 154807062 -29481600 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr4 154807402 154807433 -29481229 + AT_rich Low_complexity Low_complexity 1 31 0 544 289 43 17 chr4 154807722 154807957 -29480705 - MER97c DNA MER1_type? -715 375 135 483 227 65 39 chr4 154809304 154809458 -29479204 - MIR SINE MIR -13 249 92 735 356 67 31 chr4 154809660 154810409 -29478253 + L1MEd LINE L1 481 1256 -4863 2255 85 0 3 chr4 154810427 154810743 -29477919 + AluSx SINE Alu 1 315 0 16514 163 37 12 chr4 154810747 154813521 -29475141 + L1M1 LINE L1 17 2879 -4686 273 57 0 0 chr4 154813521 154813556 -29475106 + (CA)n Simple_repeat Simple_repeat 2 36 0 16514 163 37 12 chr4 154813556 154813877 -29474785 + L1M1 LINE L1 2879 3190 -4375 5937 61 12 12 chr4 154813878 154814630 -29474032 - SVA Other Other 0 1386 635 180 234 0 0 chr4 154814820 154814867 -29473795 + (TA)n Simple_repeat Simple_repeat 1 47 0 943 156 26 10 chr4 154815018 154815210 -29473452 + MER4D LTR ERV1 1 195 -708 17548 39 0 0 chr4 154815210 154817468 -29471194 - L1PA4 LINE L1 -756 5390 3133 6253 38 0 4 chr4 154817468 154818217 -29470445 + L1PA4 LINE L1 5392 6149 -6 305 211 8 78 chr4 154818278 154818406 -29470256 + L1ME3 LINE L1 5963 6081 -81 268 81 0 0 chr4 154818443 154818480 -29470182 + MER4D LTR ERV1 183 219 -653 * 1979 158 17 29 chr4 154818473 154818891 -29469771 + MER4E LTR ERV1 414 779 0 336 379 44 14 chr4 154819451 154819744 -29468918 + L1MEd LINE L1 2513 2814 -3315 1716 165 55 6 chr4 154819918 154820322 -29468340 + LTR24 LTR ERV1 5 467 0 1661 263 62 8 chr4 154820323 154820917 -29467745 + L1MC4a LINE L1 7181 7806 -2 342 0 0 0 chr4 154821125 154821163 -29467499 + (TG)n Simple_repeat Simple_repeat 2 39 0 1810 160 9 38 chr4 154822072 154822391 -29466271 - AluSx SINE Alu -2 310 1 345 211 14 0 chr4 154822773 154822844 -29465818 - MER94 DNA DNA -49 85 14 368 277 43 2 chr4 154823081 154823220 -29465442 + MER5A DNA MER1_type 16 189 0 2532 64 0 3 chr4 154824071 154824383 -29464279 + AluY SINE Alu 1 311 0 8853 94 3 1 chr4 154824715 154825985 -29462677 - L1P LINE L1 -4867 1279 7 2301 102 20 0 chr4 154825990 154826165 -29462497 - AluSp SINE Alu -2 311 126 243 0 0 0 chr4 154826165 154826192 -29462470 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2301 102 20 0 chr4 154826192 154826321 -29462341 - AluSp SINE Alu -187 126 1 436 277 95 37 chr4 154826531 154826942 -29461720 + L1ME2 LINE L1 5227 5650 -514 313 320 96 18 chr4 154827002 154827221 -29461441 + L1ME2 LINE L1 5717 5952 -212 26 0 0 0 chr4 154828251 154828277 -29460385 + AT_rich Low_complexity Low_complexity 1 26 0 273 29 0 0 chr4 154828415 154828449 -29460213 + (TG)n Simple_repeat Simple_repeat 2 35 0 1841 271 70 30 chr4 154829204 154829506 -29459156 + L1ME1 LINE L1 784 1072 -5869 351 78 0 0 chr4 154829506 154829557 -29459105 + (CA)n Simple_repeat Simple_repeat 2 52 0 1841 271 70 30 chr4 154829557 154830466 -29458196 + L1ME1 LINE L1 1072 2046 -4895 1521 245 42 21 chr4 154830498 154831070 -29457592 + L1M4 LINE L1 4581 5164 -982 310 269 0 0 chr4 154831189 154831256 -29457406 + L1ME1 LINE L1 5238 5304 -1637 438 135 71 24 chr4 154831267 154831393 -29457269 + L1ME1 LINE L1 5423 5554 -1387 2115 274 49 8 chr4 154831414 154832152 -29456510 + L1ME1 LINE L1 6158 6925 -36 285 241 28 46 chr4 154833658 154833766 -29454896 + MLT1J2 LTR MaLR 44 149 -301 41 101 0 0 chr4 154834611 154834750 -29453912 + AT_rich Low_complexity Low_complexity 1 139 0 2366 90 3 6 chr4 154836078 154836390 -29452272 - AluSx SINE Alu -1 311 1 482 97 0 0 chr4 154837700 154837772 -29450890 + MSTA LTR MaLR 1 72 -356 2113 117 57 20 chr4 154837774 154838125 -29450537 + THE1B LTR MaLR 1 364 0 6794 121 7 3 chr4 154838125 154839185 -29449477 + THE1B-int LTR MaLR 1 1064 -516 11002 103 21 0 chr4 154839363 154840911 -29447751 + THE1B-int LTR MaLR 1 1580 0 1885 131 98 18 chr4 154840911 154841248 -29447414 + THE1B LTR MaLR 1 364 0 1663 148 85 6 chr4 154841248 154841579 -29447083 + MSTA LTR MaLR 70 426 -2 22 35 0 0 chr4 154841883 154841912 -29446750 + AT_rich Low_complexity Low_complexity 1 29 0 279 323 97 41 chr4 154842666 154842861 -29445801 - L2 LINE L2 -1360 1954 1749 510 240 8 8 chr4 154843374 154843503 -29445159 - HAL1 LINE L1 -826 1681 1553 186 103 0 0 chr4 154843505 154843534 -29445128 + (TTA)n Simple_repeat Simple_repeat 1 29 0 536 171 0 0 chr4 154843574 154843662 -29445000 - FRAM SINE Alu -54 122 35 397 245 75 100 chr4 154843662 154843993 -29444669 - HAL1 LINE L1 -939 1568 1246 1667 152 82 28 chr4 154845301 154845657 -29443005 + THE1C LTR MaLR 1 375 0 505 310 23 35 chr4 154846363 154846537 -29442125 - MER5B DNA MER1_type 0 178 7 261 0 0 0 chr4 154847520 154847549 -29441113 + (TG)n Simple_repeat Simple_repeat 2 30 0 541 328 98 13 chr4 154847680 154847915 -29440747 + MIR SINE MIR 3 257 -5 2586 52 0 0 chr4 154849093 154849398 -29439264 + AluY SINE Alu 1 305 -6 22 0 0 0 chr4 154850167 154850189 -29438473 + AT_rich Low_complexity Low_complexity 1 22 0 763 141 54 0 chr4 154850563 154850712 -29437950 + L1MA8 LINE L1 6132 6288 -3 183 162 0 0 chr4 154851726 154851763 -29436899 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 216 97 0 0 chr4 154852514 154852545 -29436117 + (TG)n Simple_repeat Simple_repeat 2 32 0 22 0 0 0 chr4 154852816 154852838 -29435824 + AT_rich Low_complexity Low_complexity 1 22 0 1866 194 58 19 chr4 154852922 154853334 -29435328 + MSTA LTR MaLR 1 428 0 40 37 0 0 chr4 154853383 154853437 -29435225 + AT_rich Low_complexity Low_complexity 1 54 0 550 302 68 28 chr4 154853762 154854014 -29434648 + MIR SINE MIR 1 262 0 243 61 0 0 chr4 154854440 154854473 -29434189 + (TG)n Simple_repeat Simple_repeat 2 34 0 7646 23 0 3 chr4 154854494 154855602 -29433060 - L1PA3 LINE L1 0 6155 5050 5310 30 8 0 chr4 154855602 154856244 -29432418 + L1P LINE L1 4190 4836 -1310 219 333 45 0 chr4 154857592 154857658 -29431004 + MIR SINE MIR 47 115 -147 448 342 100 8 chr4 154857914 154858265 -29430397 + L1ME3A LINE L1 5568 5950 -220 186 43 0 0 chr4 154858273 154858296 -29430366 + (TG)n Simple_repeat Simple_repeat 2 24 0 371 318 69 17 chr4 154859025 154859198 -29429464 - MIR3 SINE MIR -1 207 26 2714 40 0 0 chr4 154859273 154859600 -29429062 - L1PA5 LINE L1 -5 6149 5823 1769 153 7 24 chr4 154859722 154860016 -29428646 - AluSx SINE Alu -23 289 1 183 80 0 0 chr4 154860025 154860050 -29428612 + (TA)n Simple_repeat Simple_repeat 1 25 0 384 271 196 4 chr4 154860066 154860291 -29428371 - MLT1H1 LTR MaLR -7 548 281 453 301 0 52 chr4 154861800 154861953 -29426709 - L2 LINE L2 -2 3311 3167 391 165 47 12 chr4 154862412 154862497 -29426165 - L1PA15 LINE L1 0 6165 6078 23 33 0 0 chr4 154863069 154863099 -29425563 + AT_rich Low_complexity Low_complexity 1 30 0 446 268 57 16 chr4 154863993 154864187 -29424475 - L1M4 LINE L1 -2202 3944 3743 303 347 34 26 chr4 154864242 154864510 -29424152 + L1M4 LINE L1 2890 3159 -2987 225 182 91 0 chr4 154864569 154864613 -29424049 - MLT2C2 LTR ERVL 0 520 473 1374 188 158 0 chr4 154864654 154864983 -29423679 - MLT2C2 LTR ERVL -54 410 30 607 205 246 31 chr4 154865052 154865321 -29423341 + L1MC4 LINE L1 7688 7898 -144 189 0 0 0 chr4 154865321 154865342 -29423320 + (TA)n Simple_repeat Simple_repeat 2 22 0 1560 112 25 12 chr4 154865343 154865584 -29423078 - AluSc SINE Alu -16 293 50 607 205 246 31 chr4 154865584 154865600 -29423062 + L1MC4 LINE L1 7897 8037 -5 344 253 161 16 chr4 154865626 154865812 -29422850 + L1M4 LINE L1 5003 5215 -931 8176 30 1 9 chr4 154865871 154867619 -29421043 - L1PA4 LINE L1 -2 6153 4395 21677 52 0 8 chr4 154867656 154870457 -29418205 - L1PA4 LINE L1 -2019 4127 1349 1482 138 0 4 chr4 154870557 154870810 -29417852 + AluY SINE Alu 60 311 0 24 0 0 0 chr4 154871548 154871572 -29417090 + AT_rich Low_complexity Low_complexity 1 24 0 224 200 0 33 chr4 154872170 154872230 -29416432 + (TA)n Simple_repeat Simple_repeat 2 59 0 207 0 0 0 chr4 154872230 154872253 -29416409 + (CA)n Simple_repeat Simple_repeat 2 24 0 27 29 0 0 chr4 154872561 154872595 -29416067 + AT_rich Low_complexity Low_complexity 1 34 0 223 364 70 16 chr4 154873080 154873267 -29415395 - L2 LINE L2 -178 3094 2898 1968 129 0 7 chr4 154874417 154874828 -29413834 + AluSx SINE Alu 1 409 0 231 271 0 0 chr4 154875495 154875543 -29413119 - L2 LINE L2 -17 3296 3249 34 24 0 0 chr4 154875578 154875619 -29413043 + AT_rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr4 154876439 154876462 -29412200 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr4 154876541 154876570 -29412092 + AT_rich Low_complexity Low_complexity 1 29 0 194 328 90 37 chr4 154877016 154877150 -29411512 + MIR3 SINE MIR 17 157 -51 393 329 109 22 chr4 154877430 154877834 -29410828 - L1ME LINE L1 -350 5820 5382 246 32 0 0 chr4 154877925 154877956 -29410706 + (CA)n Simple_repeat Simple_repeat 2 32 0 505 291 175 28 chr4 154878273 154879074 -29409588 - L1ME LINE L1 -2325 3821 2903 29 70 0 0 chr4 154879213 154879270 -29409392 + AT_rich Low_complexity Low_complexity 1 57 0 5224 167 14 16 chr4 154879272 154881071 -29407591 - L1MA8 LINE L1 -15 6276 4472 5172 132 25 52 chr4 154881240 154882229 -29406433 - L1PA16 LINE L1 -1 6165 5203 1101 258 27 11 chr4 154882233 154882757 -29405905 - L1M3c LINE L1 -4627 2410 1859 1739 279 51 41 chr4 154882815 154883424 -29405238 - L1M3c LINE L1 -6410 620 6 1440 246 65 61 chr4 154883580 154884323 -29404339 - L1M4 LINE L1 -2990 3156 2411 811 276 76 50 chr4 154884327 154884829 -29403833 - MLT1F1 LTR MaLR -5 562 1 21 0 0 0 chr4 154885961 154885982 -29402680 + AT_rich Low_complexity Low_complexity 1 21 0 300 302 62 0 chr4 154886926 154887055 -29401607 - MIR SINE MIR -61 201 65 1307 211 64 70 chr4 154887257 154887726 -29400936 + MER31B LTR ERV1 1 466 0 444 263 39 121 chr4 154889449 154889681 -29398981 + MIR SINE MIR 3 215 -47 2446 89 96 19 chr4 154889860 154890276 -29398386 + LTR7 LTR ERV1 1 448 -2 3310 71 0 22 chr4 154890819 154891267 -29397395 - L1PA7 LINE L1 -34 6120 5683 416 318 153 31 chr4 154891736 154891959 -29396703 - MIR SINE MIR -8 254 5 784 248 16 88 chr4 154893010 154893316 -29395346 + L1MC5 LINE L1 6611 6894 -1067 1323 198 99 0 chr4 154893335 154893628 -29395034 + L1MC1 LINE L1 6004 6325 -8 790 256 15 15 chr4 154893736 154893935 -29394727 + MER58A DNA MER1_type 1 199 -25 853 244 73 57 chr4 154893982 154894415 -29394247 + MER39 LTR ERV1 67 707 0 826 263 71 44 chr4 154894440 154894920 -29393742 + L1MC5 LINE L1 6993 7485 -476 381 257 134 40 chr4 154895016 154895218 -29393444 + L1MC5 LINE L1 7711 7931 -30 399 317 39 17 chr4 154895603 154895783 -29392879 - MLT1J LTR MaLR 0 511 328 719 100 9 0 chr4 154896272 154896382 -29392280 + (GAAA)n Simple_repeat Simple_repeat 2 112 0 306 209 58 65 chr4 154896644 154896783 -29391879 + LTR37A LTR ERV1 287 424 -2 589 297 105 45 chr4 154897874 154898221 -29390441 + LTR33 LTR ERVL 9 334 -187 2127 163 75 12 chr4 154898221 154898621 -29390041 + MSTB LTR MaLR 1 425 -1 620 62 0 0 chr4 154898628 154898708 -29389954 + MADE1 DNA Mariner 1 80 0 589 297 105 45 chr4 154898708 154898817 -29389845 + LTR33 LTR ERVL 339 501 -20 21 0 0 0 chr4 154899852 154899873 -29388789 + AT_rich Low_complexity Low_complexity 1 21 0 369 299 65 30 chr4 154899976 154900177 -29388485 + L1MC4a LINE L1 4142 4349 -1797 1470 174 31 4 chr4 154900422 154900681 -29387981 + L1PA16 LINE L1 5881 6146 -20 3667 235 45 14 chr4 154900682 154901861 -29386801 + L1 LINE L1 2373 3587 -2559 617 275 79 33 chr4 154902125 154902436 -29386226 + L1MC4a LINE L1 4967 5061 -1085 2138 133 17 8 chr4 154902436 154902788 -29385874 + THE1A LTR MaLR 1 355 0 617 275 79 33 chr4 154902788 154902992 -29385670 + L1MC4a LINE L1 5061 5254 -892 382 283 133 65 chr4 154903155 154903522 -29385140 + L1MC4a LINE L1 5592 5983 -1825 1366 215 83 11 chr4 154903600 154903949 -29384713 - MLT1A2 LTR MaLR 0 374 1 2368 64 0 0 chr4 154904788 154905083 -29383579 + AluY SINE Alu 17 311 0 27 62 0 0 chr4 154905365 154905413 -29383249 + AT_rich Low_complexity Low_complexity 1 48 0 258 302 19 38 chr4 154905667 154905773 -29382889 + L2 LINE L2 1182 1285 -2029 828 319 110 14 chr4 154905782 154906356 -29382306 + L2 LINE L2 1615 2243 -1071 21 36 0 0 chr4 154908441 154908469 -29380193 + AT_rich Low_complexity Low_complexity 1 28 0 362 258 32 113 chr4 154909213 154909399 -29379263 + MIR3 SINE MIR 17 187 -21 4372 177 49 33 chr4 154911104 154912694 -29375968 - MER52A LTR ERV1 0 1755 1 24 0 0 0 chr4 154912844 154912868 -29375794 + AT_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr4 154913059 154913079 -29375583 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 350 343 47 56 chr4 154913079 154913292 -29375370 + MIR SINE MIR 34 244 -18 331 344 86 13 chr4 154914270 154914421 -29374241 - MIR SINE MIR -50 212 51 496 183 56 8 chr4 154914703 154914829 -29373833 - L1MC1 LINE L1 0 6333 6202 26 30 0 0 chr4 154915706 154915739 -29372923 + AT_rich Low_complexity Low_complexity 1 33 0 34 0 0 0 chr4 154915809 154915843 -29372819 + AT_rich Low_complexity Low_complexity 1 34 0 348 282 234 8 chr4 154916899 154917147 -29371515 + L2 LINE L2 3010 3313 0 319 302 13 7 chr4 154917145 154917270 -29371392 - MIR SINE MIR -64 144 22 * 2225 161 8 20 chr4 154917522 154917914 -29370748 + MLT1B LTR MaLR 1 387 -3 799 291 19 0 chr4 154918161 154918371 -29370291 - MER97b DNA MER1_type? -486 567 354 673 245 38 0 chr4 154918373 154918532 -29370130 - MER97b DNA MER1_type? -838 215 51 1551 120 120 41 chr4 154918912 154919201 -29369461 - AluSx SINE Alu 0 310 1 39 38 0 0 chr4 154919502 154919555 -29369107 + AT_rich Low_complexity Low_complexity 1 53 0 503 374 20 0 chr4 154919595 154919790 -29368872 - MIR SINE MIR -56 206 8 1354 218 29 62 chr4 154921157 154921574 -29367088 + MLT2D LTR ERVL 12 414 0 200 139 0 47 chr4 154922456 154922499 -29366163 + (CA)n Simple_repeat Simple_repeat 2 42 0 246 306 177 19 chr4 154923325 154923534 -29365128 + MIR SINE MIR 21 262 0 198 167 0 0 chr4 154923606 154923642 -29365020 + (TA)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chr4 154924364 154924392 -29364270 + AT_rich Low_complexity Low_complexity 1 28 0 318 356 61 8 chr4 154925539 154925671 -29362991 + MER5B DNA MER1_type 40 178 0 1015 232 20 56 chr4 154926339 154926725 -29361937 - MER74C LTR ERVL 0 460 10 1803 152 3 0 chr4 154926769 154927052 -29361610 - AluJb SINE Alu -16 296 13 687 263 6 0 chr4 154927052 154927227 -29361435 - HERVL74 LTR ERVL -35 5650 5475 1990 312 65 49 chr4 154928350 154929275 -29359387 - HERVL74 LTR ERVL -4735 950 11 1727 181 75 61 chr4 154929285 154929727 -29358935 - MER74C LTR ERVL 0 460 13 1979 220 21 4 chr4 154930332 154930805 -29357857 + L1MB7 LINE L1 5695 6175 -9 242 348 20 109 chr4 154930905 154931198 -29357464 - L2 LINE L2 -69 3203 2937 285 359 0 17 chr4 154931332 154931449 -29357213 - L2 LINE L2 -575 2739 2625 205 236 55 18 chr4 154932225 154932280 -29356382 - L2 LINE L2 -575 2739 2683 28 48 0 0 chr4 154932989 154933031 -29355631 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr4 154933124 154933147 -29355515 + AT_rich Low_complexity Low_complexity 1 23 0 1966 38 0 0 chr4 154933990 154934226 -29354436 + AluY SINE Alu 1 236 -75 25 0 0 0 chr4 154934293 154934318 -29354344 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr4 154934449 154934470 -29354192 + AT_rich Low_complexity Low_complexity 1 21 0 1881 114 92 53 chr4 154934521 154934880 -29353782 - THE1C LTR MaLR -2 373 1 9944 121 43 6 chr4 154934880 154936403 -29352259 - THE1C-int LTR MaLR 0 1580 1 2192 143 16 16 chr4 154936403 154936774 -29351888 - THE1C LTR MaLR 0 375 5 180 0 0 0 chr4 154937031 154937051 -29351611 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1369 62 0 0 chr4 154937051 154937227 -29351435 - L1PA4 LINE L1 -15 6140 5965 198 0 0 0 chr4 154937453 154937475 -29351187 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 217 106 21 21 chr4 154937503 154937550 -29351112 + (GAA)n Simple_repeat Simple_repeat 2 48 0 335 212 147 35 chr4 154937624 154937794 -29350868 - L1ME4a LINE L1 -164 5957 5769 32 26 0 0 chr4 154937806 154937845 -29350817 + AT_rich Low_complexity Low_complexity 1 39 0 4701 239 109 61 chr4 154937904 154939924 -29348738 - L1MC4a LINE L1 0 7808 5682 1772 157 25 0 chr4 154939924 154940205 -29348457 - AluSx SINE Alu -4 308 21 4701 239 109 61 chr4 154940205 154940280 -29348382 - L1MC4a LINE L1 -2126 5682 5612 2129 116 3 0 chr4 154940284 154940577 -29348085 - AluSx SINE Alu -18 294 1 1355 227 21 7 chr4 154940844 154941126 -29347536 + L1MA4 LINE L1 1254 1539 -5026 * 4106 234 18 20 chr4 154941123 154942622 -29346040 + L1MA4 LINE L1 3075 4576 -2989 1804 127 7 14 chr4 154942627 154942918 -29345744 + L1P5 LINE L1 5504 5792 -364 228 303 0 0 chr4 154942901 154942990 -29345672 + L1MC4 LINE L1 6615 6703 -1339 * 1727 163 10 61 chr4 154942994 154943386 -29345276 + L1PB4 LINE L1 5781 6152 -4 27 0 0 0 chr4 154943386 154943413 -29345249 + AT_rich Low_complexity Low_complexity 1 27 0 8804 190 12 18 chr4 154943444 154944397 -29344265 + L1MA4 LINE L1 4638 5595 -1970 1996 143 13 0 chr4 154944397 154944705 -29343957 + AluSq SINE Alu 1 312 -1 8804 190 12 18 chr4 154944705 154945678 -29342984 + L1MA4 LINE L1 5595 6553 -1012 1558 153 156 36 chr4 154945678 154946011 -29342651 - MSTA LTR MaLR 0 428 56 1726 154 7 4 chr4 154946040 154946319 -29342343 - MSTA-int LTR MaLR -19 1561 1282 572 146 10 29 chr4 154946323 154946426 -29342236 + THE1B LTR MaLR 1 101 -263 1920 153 9 16 chr4 154946427 154946747 -29341915 + THE1A LTR MaLR 38 355 0 11189 110 8 4 chr4 154946748 154948315 -29340347 + THE1A-int LTR MaLR 2 1575 -5 2086 155 8 8 chr4 154948317 154948672 -29339990 + THE1A LTR MaLR 1 355 0 6697 163 28 51 chr4 154948679 154949496 -29339166 - MSTA-int LTR MaLR -303 1277 443 2194 138 31 3 chr4 154949496 154949850 -29338812 + THE1B LTR MaLR 1 364 0 6697 163 28 51 chr4 154949850 154949983 -29338679 - MSTA-int LTR MaLR -1137 443 308 1210 138 25 67 chr4 154949983 154950076 -29338586 - MER30 DNA MER1_type 0 230 135 2096 132 0 0 chr4 154950076 154950365 -29338297 + AluSc SINE Alu 1 289 -20 1210 138 25 67 chr4 154950365 154950510 -29338152 - MER30 DNA MER1_type -95 135 2 6697 163 28 51 chr4 154950510 154950863 -29337799 - MSTA-int LTR MaLR -1272 308 3 1516 127 134 125 chr4 154950865 154951289 -29337373 - MSTA LTR MaLR 0 428 1 248 135 96 0 chr4 154951289 154951341 -29337321 + L1MA4 LINE L1 6549 6605 -960 4254 194 34 23 chr4 154951447 154952540 -29336122 + L1MA4 LINE L1 6609 7715 -4 207 328 0 0 chr4 154952640 154952698 -29335964 + GA-rich Low_complexity Low_complexity 2 59 0 1973 150 35 44 chr4 154953336 154953703 -29334959 - THE1B LTR MaLR 0 364 1 2394 89 0 6 chr4 154954052 154954366 -29334296 - AluSx SINE Alu 0 312 1 22 35 0 0 chr4 154954462 154954491 -29334171 + AT_rich Low_complexity Low_complexity 1 29 0 728 275 25 17 chr4 154954543 154954779 -29333883 + Charlie1 DNA MER1_type 7 244 -2517 503 235 61 0 chr4 154954760 154954892 -29333770 + Charlie1 DNA MER1_type 2622 2761 0 * 193 295 33 0 chr4 154955766 154955827 -29332835 + MIR3 SINE MIR 129 191 -17 1868 221 45 18 chr4 154956223 154956672 -29331990 - LOR1b LTR ERV1 0 461 1 217 275 200 0 chr4 154957278 154957358 -29331304 + L2 LINE L2 3173 3268 -4 2083 123 0 0 chr4 154957439 154957732 -29330930 - AluSg1 SINE Alu -16 293 1 2384 215 55 37 chr4 154957810 154958428 -29330234 + LTR27 LTR ERV1 8 636 0 451 240 106 94 chr4 154958431 154958685 -29329977 + LTR27-int LTR ERV1 2 258 -6833 * 1493 229 127 7 chr4 154958652 154959009 -29329653 + LTR27-int LTR ERV1 386 800 -6291 252 0 0 0 chr4 154959009 154959037 -29329625 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1493 229 127 7 chr4 154959037 154959090 -29329572 + LTR27-int LTR ERV1 800 845 -6246 3973 171 22 24 chr4 154959094 154961539 -29327123 + MER57-int LTR ERV1 609 4918 -299 2131 98 0 0 chr4 154961539 154961814 -29326848 + AluY SINE Alu 1 275 -36 8267 133 22 11 chr4 154961817 154963376 -29325286 + MER57-int LTR ERV1 2675 7060 -31 1031 241 63 46 chr4 154963388 154963782 -29324880 + LTR27 LTR ERV1 236 636 0 453 357 32 32 chr4 154963936 154964185 -29324477 - MIR SINE MIR -12 250 2 1911 171 41 18 chr4 154965023 154965506 -29323156 + MLT2A2 LTR ERVL 3 399 -54 297 0 0 0 chr4 154965506 154965539 -29323123 + (TC)n Simple_repeat Simple_repeat 1 33 0 1911 171 41 18 chr4 154965539 154965564 -29323098 + MLT2A2 LTR ERVL 399 422 -31 186 43 0 0 chr4 154966391 154966414 -29322248 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 211 364 20 75 chr4 154966454 154966707 -29321955 + L2 LINE L2 2852 3090 -182 2575 43 3 0 chr4 154966753 154967053 -29321609 + AluY SINE Alu 1 301 -10 180 111 0 0 chr4 154967549 154967576 -29321086 + (TA)n Simple_repeat Simple_repeat 1 27 0 413 277 39 0 chr4 154967989 154968119 -29320543 + L3 LINE CR1 1280 1414 -163 237 317 92 33 chr4 154968435 154968555 -29320107 - MIR SINE MIR -88 174 48 184 381 21 0 chr4 154968578 154968675 -29319987 + L3 LINE CR1 1430 1528 -49 1802 122 61 7 chr4 154968901 154969180 -29319482 - AluSx SINE Alu -18 294 1 1894 158 0 0 chr4 154969198 154969482 -29319180 + AluSg SINE Alu 13 296 -14 406 324 53 29 chr4 154969703 154969947 -29318715 + L1MC4a LINE L1 5527 5776 -2032 636 267 21 21 chr4 154969947 154970187 -29318475 - L1MC/D LINE L1 -2271 5537 5298 22 70 0 0 chr4 154970892 154970935 -29317727 + AT_rich Low_complexity Low_complexity 1 43 0 2668 262 20 25 chr4 154970942 154971676 -29316986 + L1M3b LINE L1 11 741 -5540 780 332 31 44 chr4 154971643 154972185 -29316477 + L1M3b LINE L1 623 1157 -5124 * 2300 106 0 0 chr4 154972354 154972647 -29316015 + AluSg SINE Alu 1 293 -17 1544 193 4 4 chr4 154972739 154973019 -29315643 + AluJo SINE Alu 1 280 -32 23 54 0 0 chr4 154973019 154973056 -29315606 + AT_rich Low_complexity Low_complexity 1 37 0 1328 232 63 67 chr4 154973056 154973548 -29315114 + L1MC4a LINE L1 6047 6536 -1272 219 347 11 0 chr4 154973687 154973782 -29314880 + L3 LINE CR1 646 741 -836 1804 177 82 51 chr4 154973812 154974264 -29314398 - MER31B LTR ERV1 0 466 1 485 369 52 29 chr4 154978122 154978639 -29310023 + HAL1b LINE L1 7 535 -813 3056 166 72 11 chr4 154978846 154979453 -29309209 - MER73 LTR ERVL 0 644 1 1065 304 70 20 chr4 154979577 154980017 -29308645 + LTR16B LTR ERVL 1 462 -2 21 82 0 0 chr4 154980479 154980528 -29308134 + AT_rich Low_complexity Low_complexity 1 49 0 192 115 16 33 chr4 154980744 154980805 -29307857 + (TATAA)n Simple_repeat Simple_repeat 1 60 0 1757 168 22 42 chr4 154980904 154981262 -29307400 + MLT1A1 LTR MaLR 4 354 -11 231 153 24 12 chr4 154982216 154982301 -29306361 + (TAGA)n Simple_repeat Simple_repeat 3 88 0 25 0 0 0 chr4 154982363 154982388 -29306274 + AT_rich Low_complexity Low_complexity 1 25 0 306 347 32 23 chr4 154982471 154982687 -29305975 - ERVL LTR ERVL -1833 3931 3714 800 144 19 25 chr4 154985182 154985342 -29303320 - L1MB1 LINE L1 0 6168 6010 232 325 72 6 chr4 154986420 154986586 -29302076 - MARNA DNA Mariner -337 249 73 1388 143 4 4 chr4 154987195 154987433 -29301229 - L1MA4 LINE L1 -13 6287 6050 2998 206 33 64 chr4 154988215 154989166 -29299496 + L1MC3 LINE L1 6824 7769 -16 10494 30 2 0 chr4 154989303 154990565 -29298097 - L1PA2 LINE L1 -904 5242 3978 7715 22 0 0 chr4 154990565 154991495 -29297167 + L1PA2 LINE L1 5221 6150 -5 197 286 57 0 chr4 154992757 154992827 -29295835 + L2 LINE L2 1931 2004 -1310 373 217 85 0 chr4 154992849 154992955 -29295707 - Charlie7 DNA MER1_type -2123 489 375 254 312 113 21 chr4 154993897 154994083 -29294579 - LTR33 LTR ERVL -318 203 1 2283 108 0 3 chr4 154994534 154994848 -29293814 + AluSq SINE Alu 1 313 0 1976 114 38 3 chr4 154995017 154995307 -29293355 + AluSq SINE Alu 1 300 -13 249 289 138 6 chr4 154995560 154995719 -29292943 + L1ME1 LINE L1 17 196 -5874 1374 298 119 30 chr4 154995883 154997558 -29291104 + L1ME1 LINE L1 330 2119 -3961 2216 244 99 52 chr4 154997605 154998867 -29289795 + L1ME1 LINE L1 2202 3522 -2558 348 252 118 0 chr4 154998958 154999093 -29289569 + L1ME1 LINE L1 3533 3683 -2397 1803 129 3 53 chr4 154999149 154999467 -29289195 + AluSc SINE Alu 1 302 -7 1694 261 78 43 chr4 154999496 155000231 -29288431 + L1ME1 LINE L1 5336 6095 -5 611 57 11 0 chr4 155000246 155000334 -29288328 + (TAGA)n Simple_repeat Simple_repeat 2 90 0 7358 94 7 1 chr4 155000491 155000602 -29288060 + L1PA7 LINE L1 4308 4417 -1737 2049 129 10 0 chr4 155000602 155000897 -29287765 + AluSq SINE Alu 1 298 -15 7358 94 7 1 chr4 155000897 155002630 -29286032 + L1PA7 LINE L1 4417 6150 -4 21 0 0 0 chr4 155002868 155002889 -29285773 + AT_rich Low_complexity Low_complexity 1 21 0 241 363 35 9 chr4 155004836 155004949 -29283713 + MIR3 SINE MIR 82 197 -11 23 33 0 0 chr4 155005067 155005097 -29283565 + AT_rich Low_complexity Low_complexity 1 30 0 1925 157 0 3 chr4 155006218 155006517 -29282145 + AluSx SINE Alu 1 298 -14 265 267 0 0 chr4 155006810 155006870 -29281792 + (TATATG)n Simple_repeat Simple_repeat 6 65 0 308 331 28 52 chr4 155006986 155007237 -29281425 - L1ME LINE L1 -652 5510 5266 24 32 0 0 chr4 155008237 155008268 -29280394 + AT_rich Low_complexity Low_complexity 1 31 0 450 176 0 0 chr4 155009595 155009680 -29278982 - L1MC2 LINE L1 -258 6086 6002 347 200 12 0 chr4 155009824 155009909 -29278753 + MER53 DNA DNA 96 181 -8 * 420 163 11 11 chr4 155009833 155009925 -29278737 - MER53 DNA DNA -94 95 4 257 80 40 0 chr4 155010168 155010218 -29278444 + L1M1 LINE L1 5777 5828 -472 709 235 48 52 chr4 155010221 155010451 -29278211 - LTR27 LTR ERV1 0 636 408 548 232 7 29 chr4 155010450 155010588 -29278074 - LTR28 LTR ERV1 -878 142 8 * 13070 204 45 21 chr4 155010593 155013865 -29274797 - LTR28-int LTR ERV1 -1 6995 2616 3891 157 54 42 chr4 155013866 155014983 -29273679 - LTR27-int LTR ERV1 -4004 2064 609 398 221 0 23 chr4 155014983 155015069 -29273593 - LTR27-int LTR ERV1 -885 3995 3912 3062 203 34 64 chr4 155015076 155015814 -29272848 - LTR27-int LTR ERV1 -435 4782 4067 2672 181 67 48 chr4 155015818 155016426 -29272236 - LTR27-int LTR ERV1 -6246 845 226 390 21 0 0 chr4 155016433 155016480 -29272182 + (GA)n Simple_repeat Simple_repeat 2 48 0 1342 253 127 43 chr4 155016639 155017222 -29271440 - LTR27 LTR ERV1 -2 634 1 474 143 0 0 chr4 155017222 155017299 -29271363 + L1PB4 LINE L1 5825 5901 -255 22 35 0 0 chr4 155017735 155017764 -29270898 + AT_rich Low_complexity Low_complexity 1 29 0 1347 191 4 8 chr4 155017784 155018040 -29270622 - L1PB4 LINE L1 -1 6155 5901 189 344 56 24 chr4 155018946 155019071 -29269591 - L2 LINE L2 -172 3141 3013 * 260 312 32 64 chr4 155019053 155019210 -29269452 - L2 LINE L2 -604 2710 2559 733 320 22 31 chr4 155019732 155020145 -29268517 - HAL1 LINE L1 -2 2505 2097 * 3926 257 65 27 chr4 155020142 155021764 -29266898 - L1M4 LINE L1 -1867 4279 2597 5116 106 11 59 chr4 155021929 155022773 -29265889 - L1PA12 LINE L1 0 6168 5366 32 0 0 0 chr4 155022916 155022948 -29265714 + AT_rich Low_complexity Low_complexity 1 32 0 237 222 189 56 chr4 155023026 155023116 -29265546 + MER5B DNA MER1_type 75 176 -2 340 339 16 0 chr4 155023315 155023442 -29265220 - MIR SINE MIR -86 176 48 2212 68 4 0 chr4 155023982 155024286 -29264376 + AluY SINE Alu 2 306 0 180 0 0 0 chr4 155025422 155025442 -29263220 + (T)n Simple_repeat Simple_repeat 1 20 0 3940 61 2 0 chr4 155026102 155026607 -29262055 - L1PA7 LINE L1 -2 6152 5647 271 314 8 16 chr4 155028206 155028330 -29260332 - L1ME LINE L1 -249 5872 5750 6957 54 6 11 chr4 155029470 155031178 -29257484 + L1PA7 LINE L1 4423 6154 0 194 189 0 75 chr4 155031296 155031349 -29257313 + L2 LINE L2 1672 1720 -1594 252 349 91 10 chr4 155031607 155031816 -29256846 + L1MC/D LINE L1 5391 5616 -2192 348 24 0 0 chr4 155032061 155032102 -29256560 + (TG)n Simple_repeat Simple_repeat 2 42 0 180 351 78 0 chr4 155034049 155034126 -29254536 + L2 LINE L2 3168 3250 -22 2689 16 0 3 chr4 155034126 155034430 -29254232 + AluYb8 SINE Alu 1 303 -15 21 0 0 0 chr4 155034443 155034464 -29254198 + AT_rich Low_complexity Low_complexity 1 21 0 200 405 28 22 chr4 155036129 155036307 -29252355 - MIR3 SINE MIR -5 203 25 223 181 32 21 chr4 155036528 155036622 -29252040 + (TA)n Simple_repeat Simple_repeat 1 95 0 23 33 0 0 chr4 155036799 155036829 -29251833 + AT_rich Low_complexity Low_complexity 1 30 0 1177 189 52 73 chr4 155039627 155039913 -29248749 + MER67D LTR ERV1 1 280 -234 1425 193 29 56 chr4 155039928 155040234 -29248428 - Tigger7 DNA MER2_type -426 307 10 2623 306 60 64 chr4 155040956 155043405 -29245257 + L1PA12 LINE L1 44 3044 -4537 2394 53 0 13 chr4 155044162 155044464 -29244198 - AluY SINE Alu -13 298 1 291 210 14 106 chr4 155045407 155045511 -29243151 + MLT1G1 LTR MaLR 468 549 0 21 0 0 0 chr4 155045747 155045768 -29242894 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 155045816 155045837 -29242825 + AT_rich Low_complexity Low_complexity 1 21 0 2033 134 0 3 chr4 155046252 155046558 -29242104 - AluSq SINE Alu -8 305 1 473 252 31 16 chr4 155047052 155047179 -29241483 + MER5C DNA MER1_type 4 132 -192 3856 112 4 2 chr4 155047351 155047907 -29240755 - L1PA12 LINE L1 -249 5919 5363 1649 103 4 0 chr4 155047907 155048138 -29240524 + L1PA12 LINE L1 5934 6168 0 1161 101 25 171 chr4 155048141 155048427 -29240235 + L1MA3 LINE L1 6060 6303 -2 24 0 0 0 chr4 155048428 155048452 -29240210 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr4 155048493 155048522 -29240140 + AT_rich Low_complexity Low_complexity 1 29 0 282 333 26 10 chr4 155049148 155049340 -29239322 + L1ME3A LINE L1 4502 4696 -1450 2164 112 0 0 chr4 155049502 155049796 -29238866 + AluSq SINE Alu 1 294 -19 18342 80 5 22 chr4 155050316 155052812 -29235850 - HERVL LTR ERVL -1112 4542 2088 1014 171 12 6 chr4 155052809 155052979 -29235683 + HERVL LTR ERVL 4634 4804 -850 * 3964 131 33 3 chr4 155052980 155053620 -29235042 + Tigger4(Zombi) DNA MER2_type 1917 2575 -156 642 162 35 106 chr4 155053652 155053850 -29234812 + Tigger4(Zombi) DNA MER2_type 2541 2724 -7 336 78 59 0 chr4 155053894 155053945 -29234717 + MLT2B1 LTR ERVL 465 518 -2 23 33 0 0 chr4 155054315 155054345 -29234317 + AT_rich Low_complexity Low_complexity 1 30 0 861 299 16 34 chr4 155054863 155055184 -29233478 + L1ME3 LINE L1 5805 6119 -43 23 33 0 0 chr4 155055336 155055366 -29233296 + AT_rich Low_complexity Low_complexity 1 30 0 429 317 63 29 chr4 155055413 155055877 -29232785 + L1ME3A LINE L1 5366 5848 -322 1857 146 0 24 chr4 155055968 155056307 -29232355 + AluSx SINE Alu 5 336 0 2205 156 67 5 chr4 155056667 155057070 -29231592 - MSTA LTR MaLR 0 428 1 22 35 0 0 chr4 155057791 155057820 -29230842 + AT_rich Low_complexity Low_complexity 1 29 0 724 151 0 32 chr4 155058019 155058145 -29230517 + AluJb SINE Alu 168 289 -23 209 211 0 0 chr4 155058830 155058868 -29229794 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 438 331 0 0 chr4 155058942 155059069 -29229593 - L2 LINE L2 -18 3295 3169 1983 251 14 41 chr4 155059145 155060006 -29228656 + L1MEc LINE L1 56 1118 -5278 187 397 22 15 chr4 155060082 155060218 -29228444 + L2 LINE L2 2771 2907 -407 320 330 52 10 chr4 155060480 155060577 -29228085 + L2 LINE L2 3141 3241 -31 3436 206 42 7 chr4 155060579 155061269 -29227393 - MER44D DNA MER2_type 0 605 20 1151 273 82 49 chr4 155061926 155062377 -29226285 - MER34 LTR ERV1 -76 466 1 1414 190 38 51 chr4 155062519 155062835 -29225827 + AluJo SINE Alu 1 312 0 188 284 43 60 chr4 155063150 155063266 -29225396 + MIR SINE MIR 48 161 -101 412 297 118 39 chr4 155063447 155063676 -29224986 - MIR SINE MIR 0 262 16 21 0 0 0 chr4 155063749 155063770 -29224892 + AT_rich Low_complexity Low_complexity 1 21 0 821 30 10 0 chr4 155064993 155065093 -29223569 + HY3 scRNA scRNA 1 101 0 956 167 17 90 chr4 155065412 155065646 -29223016 - AluJb SINE Alu -5 307 91 1123 230 67 3 chr4 155065667 155065950 -29222712 + MER92B LTR ERV1 1 301 -335 414 0 0 0 chr4 155066419 155066465 -29222197 + (CA)n Simple_repeat Simple_repeat 2 47 0 214 267 27 13 chr4 155067827 155067902 -29220760 + (TA)n Simple_repeat Simple_repeat 1 76 0 215 167 12 36 chr4 155068830 155068914 -29219748 + (TA)n Simple_repeat Simple_repeat 2 83 0 486 192 39 147 chr4 155070059 155070147 -29218515 - MER96B DNA MER1_type? -1 416 320 1555 111 0 0 chr4 155070147 155070354 -29218308 + AluSx SINE Alu 1 207 -105 486 192 39 147 chr4 155070354 155070551 -29218111 - MER96B DNA MER1_type? -97 320 162 307 282 122 64 chr4 155071102 155071290 -29217372 + HAL1 LINE L1 1152 1350 -1157 1400 123 14 0 chr4 155071422 155071641 -29217021 + L1PA12 LINE L1 5944 6165 -3 237 272 95 56 chr4 155073123 155073587 -29215075 + L1M4 LINE L1 4178 4659 -1487 246 329 24 0 chr4 155073796 155073878 -29214784 + MIR SINE MIR 59 142 -66 978 184 57 33 chr4 155074268 155074480 -29214182 + MLT1A2 LTR MaLR 1 217 -157 816 219 6 6 chr4 155075288 155075452 -29213210 + FRAM SINE Alu 1 164 -2 336 291 71 0 chr4 155076189 155076330 -29212332 - L1M4 LINE L1 -1098 5048 4898 342 45 0 0 chr4 155076725 155076769 -29211893 + (TG)n Simple_repeat Simple_repeat 2 45 0 207 0 0 0 chr4 155078852 155078875 -29209787 + (A)n Simple_repeat Simple_repeat 1 23 0 203 373 9 18 chr4 155079441 155079551 -29209111 - MIR3 SINE MIR -44 164 56 507 265 158 10 chr4 155080033 155080229 -29208433 + MIR SINE MIR 14 238 -24 198 138 0 0 chr4 155080468 155080497 -29208165 + L2 LINE L2 3208 3236 -36 391 319 89 52 chr4 155080878 155081549 -29207113 + L1M4 LINE L1 2793 3494 -2652 490 123 57 19 chr4 155081549 155081655 -29207007 - L1PA15 LINE L1 -5 6160 6051 391 319 89 52 chr4 155081655 155081700 -29206962 + L1M4 LINE L1 3494 3536 -2610 264 333 73 5 chr4 155081703 155081907 -29206755 + L1M4 LINE L1 3559 3776 -2370 338 352 94 6 chr4 155082028 155082187 -29206475 + MLT1I LTR MaLR 62 234 -175 5401 88 9 5 chr4 155082243 155082995 -29205667 - L1PA11 LINE L1 0 6174 5420 694 257 0 0 chr4 155083001 155083137 -29205525 + MLT1I LTR MaLR 237 372 -37 1458 136 68 16 chr4 155083153 155083403 -29205259 + MLT1A1 LTR MaLR 103 365 0 817 308 82 24 chr4 155083448 155084337 -29204325 + L1M4 LINE L1 4053 4993 -1153 184 239 22 0 chr4 155084400 155084446 -29204216 + MIR SINE MIR 203 249 -13 362 276 0 0 chr4 155084586 155084667 -29203995 + AluJ/FLAM SINE Alu 1 66 -236 1014 192 5 10 chr4 155084770 155084963 -29203699 + AluJo SINE Alu 101 292 -20 453 97 0 0 chr4 155085178 155085250 -29203412 + (TA)n Simple_repeat Simple_repeat 2 73 0 228 35 0 0 chr4 155085252 155085281 -29203381 + (TC)n Simple_repeat Simple_repeat 2 30 0 * 249 108 0 0 chr4 155085280 155085317 -29203345 + (TA)n Simple_repeat Simple_repeat 2 38 0 23 33 0 0 chr4 155085470 155085500 -29203162 + AT_rich Low_complexity Low_complexity 1 30 0 211 234 0 0 chr4 155085542 155085589 -29203073 + (TA)n Simple_repeat Simple_repeat 2 48 0 25 31 0 0 chr4 155090980 155091012 -29197650 + AT_rich Low_complexity Low_complexity 1 32 0 24 67 0 0 chr4 155091133 155091178 -29197484 + AT_rich Low_complexity Low_complexity 1 45 0 523 139 47 70 chr4 155091364 155091420 -29197242 + MIR SINE MIR 29 85 -177 2351 154 26 14 chr4 155091420 155091841 -29196821 + MSTB LTR MaLR 1 426 0 523 139 47 70 chr4 155091841 155091913 -29196749 + MIR SINE MIR 85 154 -108 21 57 0 0 chr4 155091992 155092027 -29196635 + AT_rich Low_complexity Low_complexity 1 35 0 383 366 29 17 chr4 155092344 155092516 -29196146 + L2 LINE L2 3097 3270 -2 524 249 46 46 chr4 155092617 155092790 -29195872 + MER5B DNA MER1_type 1 173 -5 23 33 0 0 chr4 155093143 155093173 -29195489 + AT_rich Low_complexity Low_complexity 1 30 0 1602 184 92 3 chr4 155093261 155093577 -29195085 + MER2 DNA MER2_type 2 345 0 376 276 149 0 chr4 155094910 155095069 -29193593 - MER5A DNA MER1_type 0 189 4 251 261 144 18 chr4 155096807 155096918 -29191744 - MIR SINE MIR -111 151 27 23 33 0 0 chr4 155096936 155096966 -29191696 + AT_rich Low_complexity Low_complexity 1 30 0 356 278 30 71 chr4 155097071 155097240 -29191422 + MIR SINE MIR 97 258 -4 198 303 112 53 chr4 155097265 155097417 -29191245 - MIR SINE MIR -69 193 33 23 68 0 0 chr4 155097911 155097955 -29190707 + AT_rich Low_complexity Low_complexity 1 44 0 1646 192 79 14 chr4 155098463 155098817 -29189845 - MSTA LTR MaLR 0 428 52 21 57 0 0 chr4 155100571 155100606 -29188056 + AT_rich Low_complexity Low_complexity 1 35 0 366 23 0 0 chr4 155101319 155101362 -29187300 + (CA)n Simple_repeat Simple_repeat 2 44 0 4408 31 0 0 chr4 155101555 155102078 -29186584 + L1PA3 LINE L1 5630 6152 -3 21 0 0 0 chr4 155102078 155102099 -29186563 + AT_rich Low_complexity Low_complexity 1 21 0 26 82 0 0 chr4 155102251 155102312 -29186350 + AT_rich Low_complexity Low_complexity 1 61 0 382 311 66 40 chr4 155102904 155103479 -29185183 + L1MEc LINE L1 786 1375 -5021 25 75 0 0 chr4 155103846 155103899 -29184763 + AT_rich Low_complexity Low_complexity 1 53 0 282 224 17 0 chr4 155104108 155104166 -29184496 + Charlie5 DNA MER1_type 1 59 -2553 532 301 93 21 chr4 155104195 155104724 -29183938 - L1M4 LINE L1 -3444 2702 2136 2838 163 20 37 chr4 155104829 155105863 -29182799 - L1 LINE L1 -3373 4192 3182 301 326 72 62 chr4 155105863 155106139 -29182523 - L1 LINE L1 -5750 1816 1538 2647 82 38 90 chr4 155106160 155106661 -29182001 + SVA Other Other 393 867 -519 41 36 0 0 chr4 155107714 155107769 -29180893 + AT_rich Low_complexity Low_complexity 1 55 0 302 317 61 45 chr4 155107907 155108077 -29180585 + L1MC4 LINE L1 6851 7028 -1014 1046 178 27 36 chr4 155108077 155108296 -29180366 + MER20 DNA MER1_type 1 217 -2 302 317 61 45 chr4 155108296 155108371 -29180291 + L1MC4 LINE L1 7028 7100 -942 1256 194 85 52 chr4 155109457 155109787 -29178875 + MER58B DNA MER1_type 1 341 0 297 336 58 0 chr4 155109790 155109927 -29178735 + MIR SINE MIR 12 156 -106 1026 235 22 53 chr4 155110029 155110348 -29178314 - MLT1A2 LTR MaLR -65 309 1 397 262 124 0 chr4 155110351 155110496 -29178166 - L1ME3A LINE L1 -216 5954 5792 1017 248 59 72 chr4 155110660 155111405 -29177257 - L1ME3A LINE L1 -371 5791 5055 667 296 48 56 chr4 155111516 155112123 -29176539 - L1ME3A LINE L1 -1288 4858 4257 192 40 0 0 chr4 155112126 155112151 -29176511 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 4849 63 3 0 chr4 155112151 155112767 -29175895 - L1PA8 LINE L1 -16 6156 5539 221 344 42 52 chr4 155112876 155112972 -29175690 - MIR SINE MIR -78 130 36 1059 142 17 90 chr4 155113554 155113787 -29174875 - AluJb SINE Alu -6 306 91 2004 222 71 26 chr4 155113808 155114417 -29174245 + MER92B LTR ERV1 1 636 0 2166 97 3 0 chr4 155114794 155115092 -29173570 + AluSp SINE Alu 1 299 -14 300 360 9 9 chr4 155115326 155115437 -29173225 + MER5A DNA MER1_type 78 188 -1 181 296 37 0 chr4 155115662 155115716 -29172946 - MIR SINE MIR -70 138 83 1574 75 0 28 chr4 155116236 155116480 -29172182 + AluY SINE Alu 77 314 0 3997 86 2 5 chr4 155116994 155117554 -29171108 - L1P LINE L1 -1340 4806 4249 225 272 158 61 chr4 155117557 155117671 -29170991 + MER5A DNA MER1_type 63 187 -2 2071 137 132 5 chr4 155118790 155119170 -29169492 + MSTA LTR MaLR 1 428 0 2591 80 118 5 chr4 155119735 155119774 -29168888 - MLT2A1 LTR ERVL 0 444 411 996 48 0 0 chr4 155119774 155119900 -29168762 + (TAGA)n Simple_repeat Simple_repeat 3 128 0 2591 80 118 5 chr4 155119900 155120258 -29168404 - MLT2A1 LTR ERVL -33 411 2 431 304 93 34 chr4 155120454 155120911 -29167751 + LTR33 LTR ERVL 1 521 0 300 246 45 45 chr4 155121981 155122091 -29166571 + MIR SINE MIR 87 196 -66 241 214 0 43 chr4 155122523 155122593 -29166069 + CT-rich Low_complexity Low_complexity 4 70 0 186 43 0 0 chr4 155123162 155123185 -29165477 + (TG)n Simple_repeat Simple_repeat 1 23 0 1747 122 0 16 chr4 155124695 155124941 -29163721 - AluSq SINE Alu -20 293 52 30327 111 14 15 chr4 155124988 155129613 -29159049 + L1P LINE L1 11 4627 -1519 2440 230 30 13 chr4 155129733 155130338 -29158324 - L1MA9 LINE L1 -917 5229 4615 3781 191 64 40 chr4 155130348 155130939 -29157723 + L1MA9 LINE L1 5254 5829 -483 1493 226 44 26 chr4 155130939 155131328 -29157334 + MSTD LTR MaLR 1 396 0 3781 191 64 40 chr4 155131328 155131620 -29157042 + L1MA9 LINE L1 5829 6164 -148 243 88 0 0 chr4 155131620 155131654 -29157008 + (CA)n Simple_repeat Simple_repeat 1 34 0 3781 191 64 40 chr4 155131654 155131736 -29156926 + L1MA9 LINE L1 6164 6243 -69 241 169 34 8 chr4 155131738 155131856 -29156806 + (TA)n Simple_repeat Simple_repeat 2 122 0 358 260 64 35 chr4 155131856 155132029 -29156633 + L1MEd LINE L1 905 1082 -5037 377 239 34 0 chr4 155132030 155132118 -29156544 - MLT2F LTR ERVL -23 605 515 794 273 97 87 chr4 155132144 155132726 -29155936 - MLT2F LTR ERVL -92 571 1 976 300 44 35 chr4 155133086 155133519 -29155143 - ERVL-F LTR ERVL -321 5443 5007 1604 288 37 37 chr4 155133660 155134258 -29154404 - ERVL-F LTR ERVL -959 4805 4208 828 199 31 21 chr4 155134285 155134476 -29154186 + MERVL LTR ERVL 3998 4190 -1574 347 284 0 0 chr4 155134477 155134565 -29154097 + L1MD3 LINE L1 7513 7600 -395 2848 39 6 0 chr4 155134888 155135261 -29153401 - L1P LINE L1 -824 5330 4954 7184 26 1 0 chr4 155135261 155136110 -29152552 + L1PA4 LINE L1 5304 6153 -2 303 123 0 18 chr4 155136369 155136426 -29152236 - L1MA6 LINE L1 0 6300 6245 645 170 9 0 chr4 155136478 155136590 -29152072 + FLAM_C SINE Alu 2 114 -19 371 173 9 0 chr4 155136607 155136717 -29151945 + (TA)n Simple_repeat Simple_repeat 2 112 0 256 389 6 22 chr4 155137667 155137847 -29150815 + MERVL LTR ERVL 2885 3061 -2424 585 314 71 26 chr4 155137850 155138289 -29150373 + MERVL LTR ERVL 3889 4325 -1329 537 254 70 7 chr4 155138289 155138431 -29150231 + MIR SINE MIR 110 260 -2 261 285 106 63 chr4 155138581 155138715 -29149947 + MIR SINE MIR 45 193 -69 2127 105 0 46 chr4 155138715 155139021 -29149641 + AluSc SINE Alu 1 292 -17 261 285 106 63 chr4 155139021 155139093 -29149569 + MIR SINE MIR 193 260 -2 243 147 27 27 chr4 155139484 155139559 -29149103 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 21 36 0 0 chr4 155139917 155139945 -29148717 + AT_rich Low_complexity Low_complexity 1 28 0 212 157 26 70 chr4 155139984 155140099 -29148563 + (TATAA)n Simple_repeat Simple_repeat 4 113 0 6672 70 15 0 chr4 155140235 155141643 -29147019 - L1PA7 LINE L1 0 6154 4738 660 324 95 13 chr4 155141999 155142314 -29146348 + Charlie7 DNA MER1_type 1 341 -2271 1748 243 148 26 chr4 155142331 155143267 -29145395 + Charlie7 DNA MER1_type 1486 2536 -76 193 107 40 53 chr4 155143299 155143374 -29145288 + (TTATA)n Simple_repeat Simple_repeat 1 74 0 28 79 0 0 chr4 155143379 155143442 -29145220 + AT_rich Low_complexity Low_complexity 1 63 0 391 314 128 6 chr4 155144068 155144224 -29144438 + L2 LINE L2 1072 1246 -2068 1763 148 15 42 chr4 155144269 155144600 -29144062 - L1MCa LINE L1 -5605 821 500 1661 128 65 88 chr4 155144600 155144984 -29143678 - THE1C LTR MaLR 0 375 1 3999 154 6 26 chr4 155144985 155145648 -29143014 - THE1C-int LTR MaLR -67 1513 864 425 141 0 0 chr4 155145648 155145719 -29142943 - AluS SINE Alu -237 76 6 386 222 11 11 chr4 155145723 155145813 -29142849 + L2 LINE L2 2375 2464 -850 309 327 35 0 chr4 155145814 155145927 -29142735 + L2 LINE L2 2644 2760 -554 651 277 64 22 chr4 155146033 155146338 -29142324 - MER110A LTR ERV1 0 468 187 230 216 81 0 chr4 155146421 155146495 -29142167 - MER110A LTR ERV1 -388 80 1 1191 273 37 35 chr4 155146802 155147238 -29141424 + L2 LINE L2 2573 3010 -303 339 303 0 37 chr4 155147245 155147354 -29141308 + L2 LINE L2 3115 3219 -94 1601 183 121 6 chr4 155148186 155148541 -29140121 - MSTD LTR MaLR 0 396 1 21 0 0 0 chr4 155149313 155149334 -29139328 + AT_rich Low_complexity Low_complexity 1 21 0 769 306 58 21 chr4 155149986 155150362 -29138300 + MLT1I LTR MaLR 19 408 -1 711 209 7 0 chr4 155151856 155151995 -29136667 + MER3 DNA MER1_type 1 140 -69 184 345 17 0 chr4 155152107 155152165 -29136497 - L3 LINE CR1 -2 1575 1517 294 234 234 16 chr4 155152777 155152901 -29135761 - MER5B DNA MER1_type -27 151 1 36 40 0 0 chr4 155153604 155153654 -29135008 + AT_rich Low_complexity Low_complexity 1 50 0 291 259 89 0 chr4 155156139 155156274 -29132388 - Charlie7 DNA MER1_type -2456 156 10 1773 217 87 84 chr4 155156907 155157678 -29130984 - L1ME1 LINE L1 -7 6228 5456 1762 148 48 53 chr4 155157724 155158101 -29130561 + THE1C LTR MaLR 1 375 0 1864 250 50 64 chr4 155158239 155159239 -29129423 - L1ME1 LINE L1 -2717 3498 2513 1719 253 81 18 chr4 155159273 155160068 -29128594 - L1ME1 LINE L1 -3996 2400 1556 5765 163 12 6 chr4 155160088 155161754 -29126908 - L1PB2 LINE L1 -18 6133 4456 259 284 58 26 chr4 155161937 155162092 -29126570 - L1ME1 LINE L1 -4869 1244 1085 765 265 118 32 chr4 155162218 155162686 -29125976 - L1ME1 LINE L1 -5264 1132 625 1242 297 110 35 chr4 155162746 155163291 -29125371 - MLT1E LTR MaLR -7 586 1 745 342 38 13 chr4 155163398 155163845 -29124817 - L1ME1 LINE L1 -5879 517 60 22 35 0 0 chr4 155166323 155166352 -29122310 + AT_rich Low_complexity Low_complexity 1 29 0 2414 37 0 0 chr4 155167247 155167541 -29121121 - L1PA2 LINE L1 -1 6154 5861 763 207 21 128 chr4 155167852 155168180 -29120482 - MLT1A2 LTR MaLR -81 293 1 275 289 29 6 chr4 155168818 155168937 -29119725 + MIR SINE MIR 34 152 -97 589 266 22 93 chr4 155169430 155169794 -29118868 - MER46C DNA MER2_type 0 338 1 240 329 13 0 chr4 155169955 155170034 -29118628 - MIR3 SINE MIR -28 180 101 402 331 32 32 chr4 155170054 155170208 -29118454 + MIR SINE MIR 21 174 -88 330 208 28 14 chr4 155170210 155170282 -29118380 - L2 LINE L2 -3 3310 3238 231 247 72 10 chr4 155170274 155170371 -29118291 + MIR SINE MIR 160 262 0 * 2820 233 61 28 chr4 155171322 155171517 -29117145 + L1M1 LINE L1 16 203 -7362 2459 131 64 7 chr4 155171517 155171921 -29116741 - MSTA LTR MaLR 0 428 2 2820 233 61 28 chr4 155171921 155172464 -29116198 + L1M1 LINE L1 203 778 -6787 1837 168 15 35 chr4 155172461 155173655 -29115007 + L1PA16 LINE L1 4306 5825 -341 * 1837 116 0 0 chr4 155173655 155173923 -29114739 + L1PA16 LINE L1 5890 6157 -9 1837 168 15 35 chr4 155173923 155174250 -29114412 + L1PA16 LINE L1 5825 6157 -9 286 154 36 45 chr4 155174250 155174360 -29114302 + (TA)n Simple_repeat Simple_repeat 2 110 0 206 143 0 99 chr4 155174845 155174936 -29113726 + (TA)n Simple_repeat Simple_repeat 2 83 0 555 155 0 35 chr4 155174942 155175058 -29113604 + L1MA3 LINE L1 6194 6305 0 213 214 0 0 chr4 155175061 155175103 -29113559 + (ATAAG)n Simple_repeat Simple_repeat 2 43 0 530 276 122 13 chr4 155177637 155177793 -29110869 + MER5B DNA MER1_type 6 178 0 7110 213 83 24 chr4 155178192 155179829 -29108833 + L1P4 LINE L1 1 1734 -5053 5455 163 15 9 chr4 155179834 155181190 -29107472 + L1P4 LINE L1 4927 6284 -530 748 231 38 48 chr4 155181191 155181481 -29107181 + pTR5 LTR ERV1 742 1028 -1410 5295 96 59 21 chr4 155181537 155182333 -29106329 + LTR12 LTR ERV1 1 826 0 3433 93 33 6 chr4 155182333 155182849 -29105813 + L1PA13 LINE L1 5632 6161 -2 14272 187 59 69 chr4 155182862 155183461 -29105201 + L1PB1 LINE L1 6 609 -6258 576 82 35 0 chr4 155183461 155183546 -29105116 - AluSp/q SINE Alu -15 298 211 14272 187 59 69 chr4 155183546 155184656 -29104006 + L1PB1 LINE L1 609 1728 -5139 527 93 35 35 chr4 155184656 155184742 -29103920 - AluSp/q SINE Alu -17 296 211 14272 187 59 69 chr4 155184742 155185607 -29103055 + L1PB1 LINE L1 1728 2599 -4268 2371 71 7 7 chr4 155185607 155185902 -29102760 + AluY SINE Alu 1 295 -16 14272 187 59 69 chr4 155185902 155189681 -29098981 + L1PB1 LINE L1 2599 6493 -374 957 116 0 0 chr4 155189681 155189827 -29098835 + (TA)n Simple_repeat Simple_repeat 1 146 0 14272 187 59 69 chr4 155189827 155190199 -29098463 + L1PB1 LINE L1 6493 6867 0 381 322 101 0 chr4 155190739 155190888 -29097774 + MIR SINE MIR 99 262 0 772 277 144 28 chr4 155191085 155191369 -29097293 - MER82 DNA MER2_type -7 646 330 737 188 6 19 chr4 155191369 155191529 -29097133 + MLT1B LTR MaLR 1 158 -232 2054 118 54 0 chr4 155191592 155191888 -29096774 - AluSp SINE Alu -1 312 1 1058 191 5 0 chr4 155192228 155192427 -29096235 - MER82 DNA MER2_type -449 204 5 1108 271 63 51 chr4 155192631 155193400 -29095262 - L1ME LINE L1 -4470 1610 827 2901 9 0 0 chr4 155193400 155193715 -29094947 - AluYb8 SINE Alu -3 315 1 1108 271 63 51 chr4 155193715 155194243 -29094419 - L1ME LINE L1 -5253 827 307 541 222 22 15 chr4 155194347 155194482 -29094180 - L1ME LINE L1 -5929 141 6 355 255 30 27 chr4 155194747 155194904 -29093758 - MLT1I LTR MaLR -267 142 57 2579 269 59 28 chr4 155195130 155196298 -29092364 + L1ME2 LINE L1 3676 4879 -1267 1518 269 135 10 chr4 155196291 155196907 -29091755 + L1ME2 LINE L1 5418 6110 -54 * 424 316 11 26 chr4 155197111 155197276 -29091386 - MIR SINE MIR -63 145 23 198 0 0 0 chr4 155197299 155197321 -29091341 + (TG)n Simple_repeat Simple_repeat 1 22 0 2085 76 8 0 chr4 155197321 155197584 -29091078 - AluSq SINE Alu -33 280 16 183 100 20 60 chr4 155198262 155198312 -29090350 + (GGGAGA)n Simple_repeat Simple_repeat 4 51 0 21 57 0 0 chr4 155198408 155198443 -29090219 + AT_rich Low_complexity Low_complexity 1 35 0 1799 208 71 41 chr4 155198541 155199031 -29089631 + MLT1D LTR MaLR 1 505 0 200 277 0 0 chr4 155199298 155199345 -29089317 + L2 LINE L2 3264 3310 -3 530 363 33 0 chr4 155199568 155199808 -29088854 + MIR SINE MIR 1 248 -14 545 274 123 65 chr4 155200018 155200497 -29088165 + MER34 LTR ERV1 1 507 -35 203 273 30 15 chr4 155200834 155200900 -29087762 + MER91B DNA MER1_type 1 67 -123 21 0 0 0 chr4 155200975 155200996 -29087666 + AT_rich Low_complexity Low_complexity 1 21 0 1322 242 22 19 chr4 155201008 155201376 -29087286 - L1ME3 LINE L1 -28 6134 5766 368 22 0 0 chr4 155201385 155201430 -29087232 - MADE1 DNA Mariner -35 45 1 351 268 47 8 chr4 155201435 155201562 -29087100 - L1ME3 LINE L1 -418 5746 5615 * 816 274 35 8 chr4 155201541 155201909 -29086753 + L1M4 LINE L1 4986 5363 -783 312 274 52 30 chr4 155201911 155202046 -29086616 + L1M4 LINE L1 4708 4845 -1301 705 307 97 0 chr4 155203388 155203626 -29085036 + MIR SINE MIR 2 262 0 243 88 0 0 chr4 155203649 155203683 -29084979 + (TG)n Simple_repeat Simple_repeat 2 35 0 1689 167 0 24 chr4 155204340 155204660 -29084002 - AluJb SINE Alu 0 314 2 5396 105 31 8 chr4 155205130 155205970 -29082692 + L1PB1 LINE L1 5293 6151 0 287 372 82 10 chr4 155206050 155206257 -29082405 - L2 LINE L2 -262 3051 2830 406 325 199 16 chr4 155206306 155206687 -29081975 - LTR67 LTR ERVL -71 486 36 219 257 43 29 chr4 155207548 155207618 -29081044 - MER5A DNA MER1_type -22 167 97 511 304 83 66 chr4 155209815 155210350 -29078312 + L1ME LINE L1 2942 3516 -2630 309 300 96 32 chr4 155210650 155210870 -29077792 + L1ME LINE L1 4882 5115 -1031 463 335 73 16 chr4 155210998 155211434 -29077228 + L1ME LINE L1 5258 5718 -452 8185 173 29 15 chr4 155211775 155212592 -29076070 - L1PA13 LINE L1 -6 6157 5353 2111 121 10 7 chr4 155212592 155212897 -29075765 + AluSx SINE Alu 5 310 -2 8185 173 29 15 chr4 155212897 155213820 -29074842 - L1PA13 LINE L1 -810 5353 4380 438 20 0 0 chr4 155213820 155213871 -29074791 + (TG)n Simple_repeat Simple_repeat 2 52 0 8185 173 29 15 chr4 155213871 155214538 -29074124 - L1PA13 LINE L1 -1783 4380 3724 2970 182 11 20 chr4 155214538 155215181 -29073481 + L1PA13 LINE L1 3066 3702 -2444 5762 15 6 1 chr4 155215746 155216413 -29072249 - L1PA3 LINE L1 -1 6154 5485 385 283 23 50 chr4 155218192 155218646 -29070016 + L1ME2 LINE L1 1845 2347 -4049 771 218 102 59 chr4 155218681 155218984 -29069678 + L1ME2 LINE L1 4686 5001 -1214 230 289 0 58 chr4 155219086 155219276 -29069386 + C-rich Low_complexity Low_complexity 2 180 0 1480 245 75 49 chr4 155219731 155220348 -29068314 + L1ME2 LINE L1 5176 5836 -397 1383 36 0 0 chr4 155220348 155220515 -29068147 + L1PA5 LINE L1 5982 6148 -6 1480 245 75 49 chr4 155220515 155220915 -29067747 + L1ME2 LINE L1 5836 6224 -9 21 0 0 0 chr4 155221490 155221511 -29067151 + AT_rich Low_complexity Low_complexity 1 21 0 186 0 88 0 chr4 155222293 155222327 -29066335 + T-rich Low_complexity Low_complexity 2 38 0 2827 21 0 0 chr4 155222331 155222660 -29066002 - L1PA2 LINE L1 0 6155 5827 194 128 26 0 chr4 155223339 155223378 -29065284 + CT-rich Low_complexity Low_complexity 2 41 0 1901 110 43 20 chr4 155223382 155223681 -29064981 - AluSx SINE Alu -6 306 1 273 98 0 0 chr4 155223902 155223943 -29064719 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 249 33 0 0 chr4 155224511 155224541 -29064121 + (CA)n Simple_repeat Simple_repeat 2 31 0 214 121 0 69 chr4 155225168 155225226 -29063436 + (TAAAAA)n Simple_repeat Simple_repeat 6 59 0 604 224 0 0 chr4 155225228 155225344 -29063318 - FLAM_C SINE Alu -26 117 2 194 362 16 24 chr4 155225381 155225508 -29063154 - L2 LINE L2 -2678 636 511 288 297 60 37 chr4 155226386 155226706 -29061956 - L2 LINE L2 -605 2709 2305 1056 152 76 22 chr4 155226901 155227125 -29061537 - L1MA9 LINE L1 -6 6306 6071 337 86 207 0 chr4 155227129 155227187 -29061475 - L1MA9 LINE L1 -172 6140 6071 535 142 133 0 chr4 155227191 155227304 -29061358 - L1MA9 LINE L1 -172 6140 6013 210 364 171 2 chr4 155227304 155227697 -29060965 - L2 LINE L2 -1315 1999 1541 180 77 0 0 chr4 155227968 155227994 -29060668 + (CA)n Simple_repeat Simple_repeat 1 26 0 22 56 0 0 chr4 155228191 155228227 -29060435 + AT_rich Low_complexity Low_complexity 1 36 0 3230 96 19 12 chr4 155228417 155228896 -29059766 - L1PA13 LINE L1 -57 6106 5625 305 323 71 26 chr4 155229876 155230031 -29058631 - MIR3 SINE MIR -7 201 40 2245 245 47 22 chr4 155230379 155230971 -29057691 - MLT1E2 LTR MaLR -7 619 13 375 313 222 7 chr4 155231308 155231592 -29057070 + L3 LINE CR1 578 922 -655 286 124 103 0 chr4 155232236 155232333 -29056329 + (TA)n Simple_repeat Simple_repeat 1 107 0 421 274 65 24 chr4 155233731 155233899 -29054763 + MIR SINE MIR 8 182 -80 1089 341 136 18 chr4 155234193 155235274 -29053388 - L2 LINE L2 -5 3308 2095 217 367 0 0 chr4 155235384 155235474 -29053188 + L2 LINE L2 2447 2536 -778 185 149 43 0 chr4 155235769 155235816 -29052846 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 21 57 0 0 chr4 155236383 155236418 -29052244 + AT_rich Low_complexity Low_complexity 1 35 0 250 379 53 34 chr4 155236715 155236979 -29051683 - MLT1L LTR MaLR -221 394 126 2628 281 105 29 chr4 155237255 155238942 -29049720 - L1MEc LINE L1 -3875 2521 707 427 366 14 24 chr4 155239635 155239930 -29048732 - L1MEc LINE L1 -6030 366 75 247 321 9 66 chr4 155241568 155241674 -29046988 + L2 LINE L2 3197 3296 -17 24 0 0 0 chr4 155241714 155241738 -29046924 + AT_rich Low_complexity Low_complexity 1 24 0 189 0 0 0 chr4 155241760 155241781 -29046881 + (CA)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr4 155242940 155242963 -29045699 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 155242979 155243002 -29045660 + AT_rich Low_complexity Low_complexity 1 23 0 220 372 54 40 chr4 155245237 155245385 -29043277 + L2 LINE L2 3123 3272 0 24 0 0 0 chr4 155245721 155245745 -29042917 + AT_rich Low_complexity Low_complexity 1 24 0 323 231 0 19 chr4 155245851 155245955 -29042707 + GA-rich Low_complexity Low_complexity 3 104 0 219 160 40 20 chr4 155245958 155246008 -29042654 + (TAGA)n Simple_repeat Simple_repeat 3 53 0 191 161 18 0 chr4 155246013 155246069 -29042593 + GA-rich Low_complexity Low_complexity 2 58 0 1076 219 86 20 chr4 155247490 155247793 -29040869 + MLT1C LTR MaLR 145 467 0 801 233 79 99 chr4 155247911 155248315 -29040347 + MSTD LTR MaLR 1 396 0 22 35 0 0 chr4 155248439 155248468 -29040194 + AT_rich Low_complexity Low_complexity 1 29 0 203 228 105 0 chr4 155248604 155248661 -29040001 + MIR3 SINE MIR 139 201 -7 31 88 0 0 chr4 155249340 155249420 -29039242 + AT_rich Low_complexity Low_complexity 1 80 0 491 232 139 89 chr4 155249536 155249773 -29038889 - MIR SINE MIR -7 255 7 240 35 0 0 chr4 155250850 155250879 -29037783 + (ATG)n Simple_repeat Simple_repeat 3 31 0 823 271 8 53 chr4 155250881 155251138 -29037524 - MIR SINE MIR -4 258 14 242 333 46 19 chr4 155251874 155251982 -29036680 + L1M4 LINE L1 4050 4160 -1986 193 278 152 73 chr4 155252385 155252536 -29036126 - L2 LINE L2 -939 2375 2213 266 304 56 69 chr4 155252617 155252779 -29035883 - MIR SINE MIR -60 202 44 221 194 16 32 chr4 155253116 155253178 -29035484 + CT-rich Low_complexity Low_complexity 2 62 0 314 352 60 77 chr4 155253461 155253864 -29034798 - L2 LINE L2 -6 3266 2871 342 0 0 0 chr4 155254060 155254098 -29034564 + (TG)n Simple_repeat Simple_repeat 2 39 0 260 298 39 29 chr4 155255089 155255193 -29033469 + MIR SINE MIR 64 168 -94 316 269 0 43 chr4 155255247 155255340 -29033322 - L1ME3A LINE L1 -170 6000 5912 21 0 0 0 chr4 155258119 155258140 -29030522 + AT_rich Low_complexity Low_complexity 1 21 0 270 372 12 0 chr4 155259994 155260080 -29028582 + MER91A DNA MER1_type 8 94 -102 308 269 133 62 chr4 155260165 155260455 -29028207 - Charlie8 DNA MER1_type -1004 1413 1 546 119 0 0 chr4 155260683 155260767 -29027895 + (TA)n Simple_repeat Simple_repeat 1 84 0 5824 156 11 10 chr4 155261026 155262697 -29025965 - L1PB2 LINE L1 0 6151 4478 375 171 0 0 chr4 155263372 155263448 -29025214 + CT-rich Low_complexity Low_complexity 1 76 0 1838 159 3 36 chr4 155263621 155263930 -29024732 + AluSg SINE Alu 1 299 -11 676 152 0 140 chr4 155264677 155264841 -29023821 - FLAM_C SINE Alu -2 141 1 709 300 110 9 chr4 155265342 155265569 -29023093 - MIR SINE MIR -2 260 11 328 261 26 133 chr4 155265586 155265781 -29022881 + HAL1 LINE L1 178 351 -2156 231 338 75 0 chr4 155265821 155265954 -29022708 + HAL1 LINE L1 485 627 -1880 377 311 60 72 chr4 155266029 155266280 -29022382 + HAL1 LINE L1 780 1027 -1480 2779 278 61 14 chr4 155266918 155268059 -29020603 - L2 LINE L2 -2 3311 2115 560 283 137 13 chr4 155269118 155269351 -29019311 - MIR SINE MIR 0 262 1 2644 168 12 43 chr4 155269620 155269837 -29018825 + L1MB3 LINE L1 5616 5838 -345 2353 107 0 0 chr4 155269837 155270147 -29018515 + AluSg SINE Alu 1 310 0 2644 168 12 43 chr4 155270147 155270507 -29018155 + L1MB3 LINE L1 5838 6175 -8 474 274 38 85 chr4 155270596 155270808 -29017854 + MIR SINE MIR 58 259 -3 7060 60 2 0 chr4 155270910 155272056 -29016606 + L1PA5 LINE L1 5027 6154 0 294 167 36 0 chr4 155272448 155272532 -29016130 + (TA)n Simple_repeat Simple_repeat 2 88 0 310 336 161 33 chr4 155272638 155272968 -29015694 - L2 LINE L2 -137 3176 2805 561 297 46 63 chr4 155273022 155273261 -29015401 - MIR SINE MIR -27 235 1 1220 302 35 73 chr4 155273261 155273876 -29014786 - L2 LINE L2 -504 2810 2220 2264 84 10 10 chr4 155273876 155274185 -29014477 + AluY SINE Alu 1 309 -2 1220 302 35 73 chr4 155274185 155274225 -29014437 - L2 LINE L2 -1094 2220 2180 25011 85 9 4 chr4 155274405 155277820 -29010842 - L1P LINE L1 -2712 3434 1 225 0 0 0 chr4 155279116 155279141 -29009521 + (T)n Simple_repeat Simple_repeat 1 25 0 186 43 0 0 chr4 155280155 155280178 -29008484 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 331 150 113 0 chr4 155280179 155280259 -29008403 + L1MA10 LINE L1 6244 6332 -2 24 32 0 0 chr4 155280388 155280419 -29008243 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 155280656 155280677 -29007985 + AT_rich Low_complexity Low_complexity 1 21 0 212 308 77 0 chr4 155280755 155280833 -29007829 - MIR SINE MIR -111 151 68 325 200 0 0 chr4 155280948 155281018 -29007644 - L1ME LINE L1 -678 5486 5417 * 1549 288 73 38 chr4 155281016 155282025 -29006637 - L1MEc LINE L1 -4453 1943 882 2134 105 10 26 chr4 155282025 155282331 -29006331 - AluSg SINE Alu -9 301 1 1549 288 73 38 chr4 155282331 155282547 -29006115 - L1MEc LINE L1 -5514 882 675 23 0 0 0 chr4 155282651 155282674 -29005988 + AT_rich Low_complexity Low_complexity 1 23 0 638 305 46 18 chr4 155282891 155283176 -29005486 - L1MEc LINE L1 -5995 401 109 586 269 10 41 chr4 155283415 155283612 -29005050 - LTR8 LTR ERV1 0 691 501 544 317 70 24 chr4 155283782 155284151 -29004511 + L2 LINE L2 2234 2619 -695 451 231 8 26 chr4 155284500 155284617 -29004045 + LTR67 LTR ERVL 432 546 -11 553 351 96 44 chr4 155284630 155285232 -29003430 + L2 LINE L2 2656 3287 -26 195 129 0 0 chr4 155285829 155285860 -29002802 + (GGA)n Simple_repeat Simple_repeat 1 31 0 215 241 76 51 chr4 155289109 155289188 -28999474 - MIR SINE MIR -62 200 120 448 285 8 8 chr4 155289444 155289574 -28999088 + L2 LINE L2 2280 2409 -905 187 352 80 0 chr4 155289721 155289809 -28998853 + L2 LINE L2 3158 3252 -20 2147 129 0 3 chr4 155290191 155290494 -28998168 + AluSq SINE Alu 1 302 -11 1286 241 74 58 chr4 155290605 155291102 -28997560 - MLT1D LTR MaLR 0 505 1 235 268 14 28 chr4 155291158 155291229 -28997433 - MIR SINE MIR -1 261 192 275 48 0 24 chr4 155291495 155291537 -28997125 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 2065 109 3 7 chr4 155291540 155291823 -28996839 - AluSc SINE Alu -25 284 3 182 218 0 18 chr4 155292147 155292202 -28996460 + CT-rich Low_complexity Low_complexity 3 56 0 33 25 0 0 chr4 155292430 155292470 -28996192 + AT_rich Low_complexity Low_complexity 1 40 0 241 328 61 61 chr4 155293106 155293237 -28995425 - L2 LINE L2 -13 3259 3129 198 0 0 0 chr4 155293290 155293312 -28995350 + (TAAAAA)n Simple_repeat Simple_repeat 2 23 0 201 416 9 9 chr4 155293525 155293638 -28995024 + L2 LINE L2 3201 3313 0 1388 210 31 28 chr4 155293811 155294155 -28994507 - LTR8 LTR ERV1 -378 313 1 633 258 21 21 chr4 155294156 155294342 -28994320 + MIR SINE MIR 75 260 -2 386 258 17 33 chr4 155294616 155294736 -28993926 + MLT1J1 LTR MaLR 7 124 -322 26 74 0 0 chr4 155295499 155295553 -28993109 + AT_rich Low_complexity Low_complexity 1 54 0 21 89 0 0 chr4 155296182 155296238 -28992424 + AT_rich Low_complexity Low_complexity 1 56 0 23 0 0 0 chr4 155296303 155296326 -28992336 + AT_rich Low_complexity Low_complexity 1 23 0 7059 41 1 0 chr4 155296346 155297194 -28991468 - L1PA5 LINE L1 -5 6149 5301 400 330 55 69 chr4 155297370 155297718 -28990944 + MLT1J2 LTR MaLR 60 402 -48 338 299 68 103 chr4 155298187 155298508 -28990154 - MLT1J LTR MaLR -86 425 116 216 67 0 0 chr4 155298914 155298944 -28989718 + (TG)n Simple_repeat Simple_repeat 2 31 0 3772 170 30 91 chr4 155300149 155301284 -28987378 + L1MB3 LINE L1 5117 6179 -4 526 224 50 119 chr4 155301892 155302330 -28986332 - LTR37A LTR ERV1 -18 408 1 30 0 0 0 chr4 155303691 155303721 -28984941 + AT_rich Low_complexity Low_complexity 1 30 0 258 254 17 0 chr4 155304305 155304364 -28984298 - Zaphod DNA AcHobo -3971 60 1 227 35 0 0 chr4 155304398 155304427 -28984235 - MSTC LTR MaLR -2 426 398 400 308 69 0 chr4 155304709 155304839 -28983823 + LTR16A LTR ERVL 302 440 -10 198 250 0 0 chr4 155304864 155304920 -28983742 + CT-rich Low_complexity Low_complexity 2 57 0 1001 236 5 5 chr4 155305051 155305250 -28983412 - MER58A DNA MER1_type 0 224 26 67 55 0 0 chr4 155307212 155307321 -28981341 + AT_rich Low_complexity Low_complexity 1 109 0 25 65 0 0 chr4 155308037 155308083 -28980579 + AT_rich Low_complexity Low_complexity 1 46 0 2119 100 0 10 chr4 155308641 155308940 -28979722 + AluSx SINE Alu 9 304 -8 2055 96 10 7 chr4 155309438 155309741 -28978921 + AluSg1 SINE Alu 1 304 -5 2060 226 28 28 chr4 155310195 155310694 -28977968 + LTR53 LTR ERVL 6 504 -15 219 277 12 12 chr4 155310902 155310985 -28977677 + (TTTA)n Simple_repeat Simple_repeat 2 84 0 1326 234 78 50 chr4 155311012 155311473 -28977189 - Charlie5 DNA MER1_type -1121 1491 1018 1042 104 134 0 chr4 155311471 155311635 -28977027 + MSTA LTR MaLR 243 428 0 * 2400 228 50 11 chr4 155311664 155312378 -28976284 - Charlie5 DNA MER1_type -2489 123 1 1473 238 8 31 chr4 155313534 155313917 -28974745 - MLT1A2 LTR MaLR 0 374 1 2368 117 5 3 chr4 155314647 155315015 -28973647 - L1PB1 LINE L1 0 6151 5783 246 128 0 0 chr4 155315024 155315063 -28973599 + (TA)n Simple_repeat Simple_repeat 1 39 0 1454 132 0 4 chr4 155315063 155315074 -28973588 - L1PB1 LINE L1 -359 5792 5782 1095 139 0 0 chr4 155315074 155315254 -28973408 + (TA)n Simple_repeat Simple_repeat 1 180 0 1454 132 0 4 chr4 155315254 155315477 -28973185 - L1PB1 LINE L1 -369 5782 5559 4987 166 22 23 chr4 155315477 155315662 -28973000 + L1P5 LINE L1 4213 4397 -1754 180 0 0 0 chr4 155315662 155315682 -28972980 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 4987 166 22 23 chr4 155315682 155316858 -28971804 + L1P5 LINE L1 4397 5574 -577 1440 254 15 0 chr4 155317278 155317613 -28971049 + MER58B DNA MER1_type 2 341 0 21 0 0 0 chr4 155319259 155319280 -28969382 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr4 155321669 155321693 -28966969 + (T)n Simple_repeat Simple_repeat 1 24 0 5765 109 7 1 chr4 155322400 155323240 -28965422 + L1PA14 LINE L1 5308 6152 -9 23 0 0 0 chr4 155323247 155323270 -28965392 + AT_rich Low_complexity Low_complexity 1 23 0 797 321 57 42 chr4 155323342 155323725 -28964937 - MLT1J LTR MaLR -108 403 15 25 31 0 0 chr4 155323863 155323895 -28964767 + AT_rich Low_complexity Low_complexity 1 32 0 2235 110 0 0 chr4 155326322 155326621 -28962041 + AluSc SINE Alu 3 301 -8 2217 102 16 0 chr4 155327899 155328202 -28960460 - AluSg SINE Alu -2 308 1 2348 207 72 57 chr4 155430119 155430334 -28858328 + LTR1B LTR ERV1 1 211 -615 2512 110 19 40 chr4 155430334 155430706 -28857956 - THE1B LTR MaLR 0 364 1 2348 207 72 57 chr4 155430706 155431224 -28857438 + LTR1B LTR ERV1 211 745 -81 435 287 77 7 chr4 155431408 155431435 -28857227 - MIR SINE MIR -85 177 153 1615 194 3 17 chr4 155431435 155431729 -28856933 - AluJo SINE Alu -12 300 11 435 287 77 7 chr4 155431729 155431844 -28856818 - MIR SINE MIR -109 153 25 413 219 8 16 chr4 155431940 155432063 -28856599 + L1MC4 LINE L1 7709 7830 -212 423 296 134 17 chr4 155432304 155432595 -28856067 + L1 LINE L1 4027 4351 -1795 186 71 0 0 chr4 155433191 155433219 -28855443 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 2053 128 0 3 chr4 155433221 155433503 -28855159 - AluSq SINE Alu -29 284 4 2521 168 80 45 chr4 155433505 155433993 -28854669 - LTR22 LTR ERVK -4 505 1 35200 81 6 2 chr4 155434037 155438532 -28850130 - HERVK22 LTR ERVK -13 6824 2314 5454 109 31 8 chr4 155438515 155439291 -28849371 - HERVK22 LTR ERVK -6043 794 1 * 2503 160 86 43 chr4 155439291 155439779 -28848883 - LTR22 LTR ERVK 0 509 1 255 31 0 0 chr4 155439888 155439920 -28848742 + (TA)n Simple_repeat Simple_repeat 1 32 0 27 0 0 0 chr4 155439949 155439976 -28848686 + AT_rich Low_complexity Low_complexity 1 27 0 1536 115 23 0 chr4 155441889 155442107 -28846555 + L1PA13 LINE L1 5938 6160 -3 2131 87 0 0 chr4 155442114 155442380 -28846282 + AluSg SINE Alu 42 307 -3 1655 164 151 0 chr4 155442632 155442931 -28845731 + MER7A DNA MER2_type 1 342 -4 2255 113 0 6 chr4 155444285 155444596 -28844066 - AluSq SINE Alu -4 309 1 4040 83 6 0 chr4 155445440 155445979 -28842683 - L1P LINE L1 -1746 4400 3859 7236 71 8 0 chr4 155445979 155447274 -28841388 + L1PA7 LINE L1 4846 6150 -4 3245 113 20 20 chr4 155447274 155447780 -28840882 + L1PA16 LINE L1 5323 5828 -338 2373 80 0 10 chr4 155447781 155448081 -28840581 + AluY SINE Alu 1 297 -14 693 236 29 29 chr4 155449218 155449392 -28839270 - MER63A DNA MER1_type -35 175 2 280 291 55 18 chr4 155449526 155449636 -28839026 + L2 LINE L2 2314 2427 -887 389 273 114 0 chr4 155449638 155449770 -28838892 + MIR SINE MIR 84 230 -32 1272 251 64 37 chr4 155449807 155450110 -28838552 + L2 LINE L2 2432 2750 -564 1420 146 50 0 chr4 155450110 155450329 -28838333 + MER30 DNA MER1_type 1 230 0 1272 251 64 37 chr4 155450329 155450431 -28838231 + L2 LINE L2 2750 2848 -466 261 0 0 0 chr4 155450988 155451017 -28837645 + (A)n Simple_repeat Simple_repeat 1 29 0 238 286 78 0 chr4 155452796 155452873 -28835789 - L2 LINE L2 -36 3236 3154 257 294 0 0 chr4 155453699 155453767 -28834895 + MER69 DNA AcHobo 1 68 -109 548 188 133 12 chr4 155453877 155454042 -28834620 + MER69 DNA AcHobo 2342 2526 0 2300 104 0 0 chr4 155454294 155454592 -28834070 - AluSx SINE Alu -14 298 1 351 0 0 0 chr4 155454768 155454807 -28833855 + (TG)n Simple_repeat Simple_repeat 2 40 0 1079 197 88 32 chr4 155454923 155455322 -28833340 + MER69 DNA AcHobo 2094 2526 0 1923 179 71 7 chr4 155455551 155455958 -28832704 - MLT1C LTR MaLR -29 438 6 1505 185 75 123 chr4 155456088 155456526 -28832136 - MER47B DNA MER2_type -1 417 1 2148 124 0 6 chr4 155457107 155457422 -28831240 + AluSq SINE Alu 1 313 0 290 266 75 3 chr4 155457547 155457637 -28831025 + MIR SINE MIR 27 105 -103 309 281 35 18 chr4 155457829 155457943 -28830719 + MIR3 SINE MIR 82 197 -11 227 316 11 0 chr4 155458015 155458110 -28830552 - L1MEc LINE L1 -5047 1349 1254 561 307 51 72 chr4 155458182 155458675 -28829987 - L1MEc LINE L1 -4555 1758 1089 2400 102 0 0 chr4 155458675 155458979 -28829683 - AluSg SINE Alu -4 306 3 561 307 51 72 chr4 155458979 155459098 -28829564 - L1MEc LINE L1 -5224 1089 969 1296 248 114 45 chr4 155460366 155460830 -28827832 + MLT1G1 LTR MaLR 99 594 -1 253 131 0 66 chr4 155460853 155460914 -28827748 + L1MC4 LINE L1 7986 8042 0 2186 113 3 3 chr4 155460975 155461284 -28827378 - AluSq SINE Alu -4 309 1 21 0 0 0 chr4 155461991 155462012 -28826650 + AT_rich Low_complexity Low_complexity 1 21 0 354 304 9 18 chr4 155462017 155462129 -28826533 - L2 LINE L2 -14 3299 3189 220 302 83 0 chr4 155462146 155462242 -28826420 + L2 LINE L2 3137 3240 -32 409 230 157 58 chr4 155463621 155463812 -28824850 - L2 LINE L2 -2 3311 3102 679 319 72 43 chr4 155463866 155464403 -28824259 + L2 LINE L2 2727 3273 -40 1136 320 29 37 chr4 155464895 155465510 -28823152 + L1PA13 LINE L1 1 610 -6177 10921 229 21 40 chr4 155465742 155467646 -28821016 + L1P LINE L1 1765 3587 -2559 315 0 0 0 chr4 155467646 155467681 -28820981 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 10921 229 21 40 chr4 155467681 155468955 -28819707 + L1P LINE L1 3587 4883 -1263 353 304 83 47 chr4 155469974 155470503 -28818159 + HAL1 LINE L1 1109 1656 -851 1250 246 84 38 chr4 155471143 155471561 -28817101 + LTR16A1 LTR ERVL 9 445 -12 1051 320 63 23 chr4 155471573 155472173 -28816489 + HERV16 LTR ERVL 1 624 -4372 28 29 0 0 chr4 155473038 155473073 -28815589 + AT_rich Low_complexity Low_complexity 1 35 0 490 363 28 56 chr4 155473435 155473862 -28814800 - L1MEc LINE L1 -5901 662 248 273 330 28 0 chr4 155474933 155475042 -28813620 + L2 LINE L2 3197 3308 -5 357 182 15 0 chr4 155475309 155475375 -28813287 - MIR SINE MIR -49 213 147 402 301 77 7 chr4 155475760 155475903 -28812759 - MIR SINE MIR -25 237 85 686 200 25 31 chr4 155476830 155476990 -28811672 - MER5A DNA MER1_type -30 159 1 353 247 136 57 chr4 155479672 155479811 -28808851 + MER5B DNA MER1_type 20 180 -9 428 276 46 46 chr4 155479954 155480128 -28808534 - L1ME3A LINE L1 -9 6161 5988 488 268 34 39 chr4 155481578 155481757 -28806905 - MIR SINE MIR -67 195 18 249 33 0 0 chr4 155483540 155483570 -28805092 + (GA)n Simple_repeat Simple_repeat 1 30 0 1051 123 18 12 chr4 155484112 155484283 -28804379 - L1MA9 LINE L1 -88 6224 6053 1621 170 4 0 chr4 155484283 155484553 -28804109 + MER7A DNA MER2_type 52 320 -26 1394 172 14 103 chr4 155484560 155484993 -28803669 - L1MA9 LINE L1 -436 5719 5410 2193 100 10 3 chr4 155484993 155485294 -28803368 - AluSp SINE Alu -10 303 1 1394 172 14 103 chr4 155485294 155485344 -28803318 - L1MA9 LINE L1 -745 5410 5357 1962 158 30 3 chr4 155485757 155486085 -28802577 - MER7A DNA MER2_type 0 346 12 297 269 39 10 chr4 155486347 155486451 -28802211 - L1MC4 LINE L1 -5 8037 7931 2221 118 0 3 chr4 155486477 155486781 -28801881 - AluSq SINE Alu -8 305 3 1476 203 105 33 chr4 155486793 155487242 -28801420 - L1MC4 LINE L1 -778 7264 6784 35 71 0 0 chr4 155487371 155487441 -28801221 + AT_rich Low_complexity Low_complexity 1 70 0 21 0 0 0 chr4 155488908 155488929 -28799733 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 155489117 155489145 -28799517 + AT_rich Low_complexity Low_complexity 1 28 0 2094 125 7 0 chr4 155492978 155493275 -28795387 - AluSp SINE Alu -14 299 1 2175 61 0 4 chr4 155494117 155494396 -28794266 + L1PA5 LINE L1 5864 6141 -13 38 0 0 0 chr4 155494396 155494434 -28794228 + AT_rich Low_complexity Low_complexity 1 38 0 663 104 122 0 chr4 155494877 155494962 -28793700 + L1MA9 LINE L1 6067 6171 -141 243 0 0 0 chr4 155494962 155494989 -28793673 + (CA)n Simple_repeat Simple_repeat 1 27 0 663 104 122 0 chr4 155494989 155495018 -28793644 + L1MA9 LINE L1 6171 6195 -117 288 67 22 0 chr4 155495018 155495063 -28793599 + MADE1 DNA Mariner 1 46 -34 271 103 0 0 chr4 155495326 155495365 -28793297 + L1MA9 LINE L1 6191 6229 -83 301 248 59 30 chr4 155495732 155495833 -28792829 - MIR SINE MIR -108 154 51 357 357 13 14 chr4 155496701 155496857 -28791805 - MIR3 SINE MIR -71 137 2 1239 168 0 5 chr4 155497762 155497965 -28790697 - AluJb SINE Alu -5 307 106 708 251 121 9 chr4 155498068 155498291 -28790371 + MIR SINE MIR 15 262 0 872 188 50 35 chr4 155498497 155498699 -28789963 - MER3 DNA MER1_type 0 209 5 803 291 107 11 chr4 155498873 155499237 -28789425 + L1ME4a LINE L1 5364 5762 -359 242 197 0 105 chr4 155499239 155499315 -28789347 - MSTA LTR MaLR 0 426 359 * 1793 162 39 70 chr4 155499311 155499725 -28788937 - MSTA LTR MaLR -27 401 1 303 239 82 22 chr4 155499890 155500024 -28788638 + L1ME4a LINE L1 5980 6121 0 402 299 37 0 chr4 155500288 155500416 -28788246 - MLT1I LTR MaLR -18 391 259 2852 184 71 34 chr4 155500416 155501049 -28787613 - MER39 LTR ERV1 0 707 3 639 246 57 38 chr4 155501049 155501260 -28787402 - MLT1I LTR MaLR -148 261 47 181 271 51 34 chr4 155501336 155501395 -28787267 + MER5A DNA MER1_type 106 165 -24 23 0 0 0 chr4 155501432 155501455 -28787207 + AT_rich Low_complexity Low_complexity 1 23 0 339 320 98 0 chr4 155501479 155501601 -28787061 - MER94 DNA DNA 0 134 1 644 348 32 16 chr4 155501942 155502252 -28786410 + MLT1I LTR MaLR 80 394 -15 23 0 0 0 chr4 155502544 155502567 -28786095 + AT_rich Low_complexity Low_complexity 1 23 0 334 313 62 37 chr4 155502567 155502810 -28785852 + L1MC1 LINE L1 2805 3053 -3093 7569 188 36 34 chr4 155502837 155506014 -28782648 + L1MC1 LINE L1 3154 6333 0 886 214 68 56 chr4 155506470 155506793 -28781869 + LTR37A LTR ERV1 38 364 -62 22 35 0 0 chr4 155506872 155506901 -28781761 + AT_rich Low_complexity Low_complexity 1 29 0 311 252 71 106 chr4 155506919 155507173 -28781489 + L1MC/D LINE L1 4472 4716 -1430 1283 216 42 7 chr4 155507213 155507500 -28781162 + AluJo SINE Alu 1 297 -15 285 276 55 12 chr4 155507608 155507771 -28780891 + L1MC/D LINE L1 4881 5050 -1096 309 253 104 26 chr4 155507824 155507978 -28780684 + L1MC/D LINE L1 5121 5286 -860 362 265 54 30 chr4 155508211 155508377 -28780285 + L1MC/D LINE L1 5548 5717 -404 382 97 56 28 chr4 155508381 155508453 -28780209 - L1MA5A LINE L1 -3 6294 6221 243 213 16 16 chr4 155510244 155510305 -28778357 + GA-rich Low_complexity Low_complexity 1 61 0 31 58 0 0 chr4 155510973 155511025 -28777637 + AT_rich Low_complexity Low_complexity 1 52 0 244 382 127 1 chr4 155511868 155512026 -28776636 + MIR SINE MIR 37 213 -49 182 336 149 45 chr4 155512424 155512558 -28776104 - MIR3 SINE MIR -39 169 22 1819 175 58 60 chr4 155512831 155513265 -28775397 - MLT1D LTR MaLR -8 497 65 494 6 85 55 chr4 155513290 155513637 -28775025 + (TA)n Simple_repeat Simple_repeat 1 357 0 397 91 0 0 chr4 155513642 155513708 -28774954 + Tigger2 DNA MER2_type 187 252 -2466 * 1925 136 18 35 chr4 155513707 155514046 -28774616 + Tigger2 DNA MER2_type 412 744 -1974 1033 98 55 0 chr4 155514108 155514272 -28774390 + Tigger2 DNA MER2_type 2461 2633 -85 364 174 10 10 chr4 155514988 155515086 -28773576 + (TA)n Simple_repeat Simple_repeat 1 98 0 21 36 0 0 chr4 155515195 155515223 -28773439 + AT_rich Low_complexity Low_complexity 1 28 0 776 286 17 9 chr4 155515492 155515723 -28772939 - MIR SINE MIR 0 262 30 593 211 8 23 chr4 155515914 155516042 -28772620 - FLAM_A SINE Alu -7 126 1 207 0 0 0 chr4 155516059 155516082 -28772580 + (A)n Simple_repeat Simple_repeat 1 23 0 212 170 19 38 chr4 155516264 155516317 -28772345 + (TATG)n Simple_repeat Simple_repeat 4 55 0 245 357 76 0 chr4 155516327 155516484 -28772178 - MARNA DNA Mariner -212 374 206 460 326 89 35 chr4 155517468 155517680 -28770982 - L2 LINE L2 -264 3008 2809 2029 116 0 0 chr4 155517680 155517955 -28770707 - AluSx SINE Alu 0 312 38 460 326 89 35 chr4 155517955 155518183 -28770479 - L2 LINE L2 -463 2809 2551 543 322 118 26 chr4 155518277 155518581 -28770081 - L3 LINE CR1 -145 1432 1101 2752 107 18 0 chr4 155518613 155519007 -28769655 - MER41E LTR ERV1 -111 401 1 461 263 86 0 chr4 155519090 155519242 -28769420 - MER41E-int LTR ERV1 -2 6674 6510 197 359 0 0 chr4 155519293 155519346 -28769316 - L3 LINE CR1 -517 1060 1008 315 0 0 0 chr4 155520287 155520322 -28768340 + (TA)n Simple_repeat Simple_repeat 1 35 0 414 0 0 0 chr4 155520584 155520630 -28768032 + (CA)n Simple_repeat Simple_repeat 2 47 0 2335 83 0 0 chr4 155521313 155521614 -28767048 + AluSg SINE Alu 1 301 -9 1620 184 32 0 chr4 155522090 155522367 -28766295 - AluSx SINE Alu -26 286 1 189 0 0 0 chr4 155522372 155522393 -28766269 + (T)n Simple_repeat Simple_repeat 1 21 0 585 286 80 100 chr4 155522621 155523333 -28765329 - L1M4 LINE L1 -1496 4650 3953 282 265 0 51 chr4 155523362 155523460 -28765202 - L1M4 LINE L1 -2277 3869 3777 21 0 0 0 chr4 155523954 155523975 -28764687 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr4 155524370 155524412 -28764250 + AT_rich Low_complexity Low_complexity 1 42 0 536 188 139 0 chr4 155524418 155524519 -28764143 - FLAM_A SINE Alu -18 115 1 1608 177 40 20 chr4 155524558 155524858 -28763804 - AluJo SINE Alu -1 311 6 773 211 157 5 chr4 155524913 155525117 -28763545 - MIR SINE MIR -8 254 20 598 191 0 9 chr4 155525122 155525227 -28763435 - FLAM_A SINE Alu -38 104 1 480 35 0 0 chr4 155525246 155525304 -28763358 + (CA)n Simple_repeat Simple_repeat 2 59 0 2200 99 10 3 chr4 155525832 155526125 -28762537 - AluSg1 SINE Alu -14 295 1 30 0 0 0 chr4 155526223 155526253 -28762409 + AT_rich Low_complexity Low_complexity 1 30 0 192 77 0 0 chr4 155527822 155527848 -28760814 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 232 128 51 0 chr4 155528004 155528043 -28760619 + L1MC5 LINE L1 7820 7860 -101 277 82 41 0 chr4 155529956 155530005 -28758657 + (CA)n Simple_repeat Simple_repeat 2 52 0 2278 105 0 0 chr4 155530336 155530632 -28758030 + AluY SINE Alu 1 296 -15 24 0 0 0 chr4 155530683 155530707 -28757955 + AT_rich Low_complexity Low_complexity 1 24 0 517 294 201 0 chr4 155531352 155531546 -28757116 + MIR SINE MIR 3 235 -27 203 204 0 19 chr4 155531935 155531989 -28756673 + T-rich Low_complexity Low_complexity 1 53 0 283 157 6 0 chr4 155533717 155533774 -28754888 + Alu SINE Alu 1 40 -260 407 100 0 0 chr4 155533774 155533834 -28754828 + Alu SINE Alu 240 299 -13 316 131 0 98 chr4 155534236 155534297 -28754365 - L2 LINE L2 -1 3312 3258 273 164 0 98 chr4 155534808 155534869 -28753793 - L2 LINE L2 -1 3312 3258 1353 246 0 0 chr4 155536155 155536419 -28752243 + Tigger7 DNA MER2_type 1 264 -469 570 146 11 0 chr4 155536421 155536510 -28752152 + Tigger7 DNA MER2_type 2491 2580 -7 2073 123 0 30 chr4 155536548 155536849 -28751813 - AluSq SINE Alu -21 292 1 529 283 40 12 chr4 155538463 155538636 -28750026 + L1MC4a LINE L1 5403 5580 -2228 543 139 9 28 chr4 155538734 155538842 -28749820 + L1MC4a LINE L1 5780 5885 -1923 273 188 0 0 chr4 155539122 155539170 -28749492 + L1MC4a LINE L1 5882 5929 -1879 3880 157 41 13 chr4 155539641 155540329 -28748333 + MER39 LTR ERV1 1 707 0 245 218 13 0 chr4 155540435 155540513 -28748149 + (TA)n Simple_repeat Simple_repeat 1 79 0 7308 152 10 9 chr4 155540659 155541855 -28746807 + L1P3 LINE L1 720 2264 -4734 2082 169 47 47 chr4 155541856 155542346 -28746316 + LTR2B LTR ERV1 1 490 0 2642 102 2 35 chr4 155542346 155542746 -28745916 + Harlequin LTR ERV1 1 387 -6509 710 133 20 67 chr4 155542730 155542880 -28745782 + HERVE LTR ERV1 255 397 -7416 * 3840 80 8 2 chr4 155542859 155543375 -28745287 + HERVE LTR ERV1 262 780 -6116 4192 84 10 40 chr4 155543523 155544228 -28744434 + HERVE LTR ERV1 1815 2498 -4398 * 14274 60 5 3 chr4 155544217 155545982 -28742680 + HERVE LTR ERV1 3344 5110 -1786 6675 65 5 0 chr4 155545986 155546961 -28741701 + L1PA8A LINE L1 5135 6113 -18 189 74 0 0 chr4 155546964 155546991 -28741671 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 320 283 87 22 chr4 155547057 155547195 -28741467 + MIR SINE MIR 109 255 -7 257 294 8 111 chr4 155547664 155547790 -28740872 - L2 LINE L2 -10 3262 3150 299 164 0 18 chr4 155549185 155549240 -28739422 + LTR33A LTR ERVL 439 492 -31 710 281 36 0 chr4 155549698 155549890 -28738772 - MIR SINE MIR 0 262 64 237 342 103 0 chr4 155550755 155550872 -28737790 - MIR3 SINE MIR -65 143 15 840 173 22 120 chr4 155551155 155551293 -28737369 + MIR SINE MIR 10 119 -143 1843 148 50 0 chr4 155551293 155551570 -28737092 - AluSx SINE Alu -21 291 1 840 173 22 120 chr4 155551570 155551656 -28737006 + MIR SINE MIR 119 212 -50 888 209 5 29 chr4 155552115 155552321 -28736341 + MER3 DNA MER1_type 8 208 -1 691 239 122 10 chr4 155552332 155552529 -28736133 - MER58A DNA MER1_type -2 222 4 457 299 155 10 chr4 155552541 155552748 -28735914 + MIR SINE MIR 20 256 -6 327 388 67 34 chr4 155553736 155554288 -28734374 + L2 LINE L2 2007 2576 -738 32 67 0 0 chr4 155554522 155554582 -28734080 + AT_rich Low_complexity Low_complexity 1 60 0 335 321 168 0 chr4 155555469 155555606 -28733056 - MIR SINE MIR -72 190 31 1626 185 33 13 chr4 155556203 155556506 -28732156 + AluSx SINE Alu 1 309 -3 323 282 107 27 chr4 155556506 155556647 -28732015 - MIR3 SINE MIR -11 197 42 2026 62 8 11 chr4 155560719 155560979 -28727683 - AluY SINE Alu -18 293 35 216 324 27 0 chr4 155561070 155561144 -28727518 - L2 LINE L2 -226 3087 3012 281 333 37 4 chr4 155561734 155561885 -28726777 + MIR3 SINE MIR 5 160 -64 477 0 0 0 chr4 155561917 155561970 -28726692 + (TA)n Simple_repeat Simple_repeat 1 53 0 3345 208 89 45 chr4 155562001 155562588 -28726074 + L1MCb LINE L1 1 561 -6003 3615 165 24 2 chr4 155562588 155563223 -28725439 + L1PB4 LINE L1 5494 6142 -14 3345 208 89 45 chr4 155563223 155564337 -28724325 + L1MCb LINE L1 561 1764 -4800 1852 208 108 22 chr4 155564339 155564671 -28723991 + L1MCb LINE L1 2075 2377 -4187 2020 133 43 30 chr4 155564671 155565039 -28723623 - THE1C LTR MaLR 0 375 3 1852 208 108 22 chr4 155565039 155565264 -28723398 + L1MCb LINE L1 2377 2581 -3983 1909 164 7 13 chr4 155565264 155565574 -28723088 - AluJo SINE Alu 0 312 5 1852 208 108 22 chr4 155565574 155566015 -28722647 + L1MCb LINE L1 2581 3155 -3409 1145 155 35 9 chr4 155566020 155566246 -28722416 + L1MC2 LINE L1 6088 6319 -25 269 229 59 6 chr4 155566349 155566519 -28722143 + (TA)n Simple_repeat Simple_repeat 1 179 0 2080 110 43 3 chr4 155567250 155567549 -28721113 + AluSx SINE Alu 1 311 -1 801 281 158 12 chr4 155568101 155568299 -28720363 - L2 LINE L2 -4 3309 3141 333 0 0 0 chr4 155568299 155568336 -28720326 + (TG)n Simple_repeat Simple_repeat 2 38 0 801 281 158 12 chr4 155568336 155568640 -28720022 - L2 LINE L2 -172 3141 2725 1705 279 26 17 chr4 155568641 155569171 -28719491 - MLT1F LTR MaLR 0 542 8 877 272 59 22 chr4 155569174 155569446 -28719216 - L2 LINE L2 -1691 1623 1342 2704 211 48 12 chr4 155569817 155570091 -28718571 - LTR65 LTR ERV1 0 669 406 2480 140 51 10 chr4 155570091 155570506 -28718156 - MSTB1 LTR MaLR 0 432 1 2704 211 48 12 chr4 155570506 155570875 -28717787 - LTR65 LTR ERV1 -263 406 3 638 339 34 4 chr4 155571961 155572197 -28716465 - MIR SINE MIR -1 261 19 818 301 41 16 chr4 155573105 155573421 -28715241 + L2 LINE L2 1853 2176 -1138 314 205 359 0 chr4 155573424 155573541 -28715121 + L2 LINE L2 2304 2462 -852 311 334 59 65 chr4 155574077 155574418 -28714244 + MLT1K LTR MaLR 139 477 -111 268 284 135 40 chr4 155574715 155574863 -28713799 - MLT1K LTR MaLR -236 352 191 279 205 90 0 chr4 155575049 155575127 -28713535 + MLT1K LTR MaLR 504 588 0 465 337 98 46 chr4 155575246 155575593 -28713069 + L2 LINE L2 2442 2806 -508 3821 90 26 44 chr4 155576515 155577515 -28711147 + Harlequin LTR ERV1 350 4092 -3693 509 209 17 20 chr4 155577615 155577962 -28710700 + (TA)n Simple_repeat Simple_repeat 1 346 0 379 155 52 0 chr4 155577977 155578132 -28710530 + (TA)n Simple_repeat Simple_repeat 1 163 0 306 296 68 8 chr4 155578303 155578435 -28710227 - L1MEd LINE L1 -5489 630 491 194 105 66 26 chr4 155578788 155578864 -28709798 + (TA)n Simple_repeat Simple_repeat 2 80 0 22 0 0 0 chr4 155579043 155579065 -28709597 + AT_rich Low_complexity Low_complexity 1 22 0 1860 189 62 51 chr4 155582316 155582766 -28705896 + Charlie1a DNA MER1_type 49 503 -952 643 188 134 34 chr4 155582759 155582998 -28705664 + Charlie1a DNA MER1_type 1193 1455 0 * 231 280 0 67 chr4 155583214 155583289 -28705373 - L2 LINE L2 -5 3267 3198 205 273 0 0 chr4 155583304 155583348 -28705314 + L2 LINE L2 3189 3232 -81 283 297 95 12 chr4 155583348 155583546 -28705116 + MIR SINE MIR 16 231 -31 979 250 4 21 chr4 155584279 155584515 -28704147 + MIR SINE MIR 15 246 -16 35 0 0 81 chr4 155584524 155584586 -28704076 + AT_rich Low_complexity Low_complexity 1 57 0 2221 96 34 0 chr4 155584590 155584883 -28703779 - AluSg SINE Alu -7 303 1 210 71 0 0 chr4 155586010 155586038 -28702624 + (CA)n Simple_repeat Simple_repeat 1 28 0 308 188 145 0 chr4 155588374 155588443 -28700219 - L2 LINE L2 -1 3271 3193 631 218 0 0 chr4 155588949 155589059 -28699603 - FLAM_A SINE Alu -32 110 1 588 206 118 0 chr4 155589138 155589274 -28699388 + MER5C DNA MER1_type 3 154 -170 2943 165 15 0 chr4 155589646 155590125 -28698537 + MER66B LTR ERV1 1 486 0 589 311 83 4 chr4 155590728 155590956 -28697706 - MIR SINE MIR -14 248 3 563 255 55 0 chr4 155590960 155591105 -28697557 - MIR SINE MIR -60 202 50 862 279 19 27 chr4 155591198 155591456 -28697206 + MIR SINE MIR 1 256 -6 332 346 26 0 chr4 155592523 155592676 -28695986 + L3 LINE CR1 1251 1407 -170 24 32 0 0 chr4 155592931 155592962 -28695700 + AT_rich Low_complexity Low_complexity 1 31 0 1668 275 122 9 chr4 155593102 155593837 -28694825 - L2 LINE L2 -188 3125 2316 1753 185 0 10 chr4 155593861 155594164 -28694498 + AluJb SINE Alu 1 300 -12 706 188 174 0 chr4 155594164 155594302 -28694360 + AluJb SINE Alu 134 295 -17 482 178 11 11 chr4 155594401 155594491 -28694171 - MER7A DNA MER2_type -257 89 2 2268 61 0 3 chr4 155594577 155594872 -28693790 - L1PA5 LINE L1 0 6154 5861 505 0 0 0 chr4 155595136 155595194 -28693468 - L1P LINE L1 -736 5419 5362 * 7544 29 1 4 chr4 155595190 155596109 -28692553 + L1P LINE L1 3224 4139 -2007 996 208 28 5 chr4 155596113 155596325 -28692337 - MER20 DNA MER1_type -2 217 1 514 244 38 15 chr4 155596895 155597026 -28691636 - MLT1I LTR MaLR -1 408 275 620 114 23 69 chr4 155597060 155597191 -28691471 - L1MA4 LINE L1 0 6300 6176 246 289 4 54 chr4 155597576 155597731 -28690931 + MLT1K LTR MaLR 135 264 -324 2366 125 13 50 chr4 155597752 155598209 -28690453 - L1MA4 LINE L1 0 6300 5861 850 271 69 80 chr4 155598595 155599450 -28689212 - HAL1b LINE L1 -437 911 66 351 0 0 0 chr4 155600856 155600895 -28687767 + (CA)n Simple_repeat Simple_repeat 2 40 0 379 214 24 12 chr4 155601146 155601230 -28687432 - L2 LINE L2 0 3313 3229 231 364 10 40 chr4 155602696 155602795 -28685867 - MIR SINE MIR -128 134 39 214 220 11 11 chr4 155604622 155604713 -28683949 + (TA)n Simple_repeat Simple_repeat 2 92 0 308 307 79 0 chr4 155604935 155605049 -28683613 - L2 LINE L2 -9 3304 3182 1926 164 124 6 chr4 155605115 155605463 -28683199 - MSTA LTR MaLR -39 389 1 525 348 228 14 chr4 155605472 155606101 -28682561 - L2 LINE L2 -207 3065 2290 2599 43 0 0 chr4 155606106 155606409 -28682253 + AluY SINE Alu 1 303 -8 344 182 26 13 chr4 155606412 155606489 -28682173 - MER20 DNA MER1_type -4 215 138 765 329 4 8 chr4 155606590 155606824 -28681838 - MIR SINE MIR -17 245 13 244 322 74 0 chr4 155606831 155606952 -28681710 + MER94 DNA DNA 4 133 -1 815 246 143 9 chr4 155607097 155607321 -28681341 + MIR SINE MIR 9 262 0 502 302 68 10 chr4 155608035 155608240 -28680422 + L2 LINE L2 3096 3312 -1 21 0 0 0 chr4 155608679 155608700 -28679962 + AT_rich Low_complexity Low_complexity 1 21 0 277 314 175 0 chr4 155608758 155608908 -28679754 - MIR SINE MIR -62 146 21 22 35 0 0 chr4 155608996 155609025 -28679637 + AT_rich Low_complexity Low_complexity 1 29 0 314 253 17 152 chr4 155609109 155609287 -28679375 - MIR SINE MIR -4 258 105 278 327 33 83 chr4 155609939 155610097 -28678565 - MIR SINE MIR -61 147 3 208 193 35 53 chr4 155611285 155611342 -28677320 - L2 LINE L2 0 3272 3217 571 226 16 8 chr4 155611553 155611677 -28676985 - L2 LINE L2 -1 3312 3188 633 229 60 108 chr4 155611972 155612221 -28676441 + MIR SINE MIR 6 242 -20 2267 111 0 0 chr4 155612221 155612518 -28676144 - AluSg SINE Alu -13 297 1 262 346 50 6 chr4 155612714 155612873 -28675789 - MIR SINE MIR -45 217 52 298 309 73 18 chr4 155613400 155613510 -28675152 - L2 LINE L2 -19 3253 3138 224 309 8 57 chr4 155613852 155613975 -28674687 - L2 LINE L2 -508 2806 2690 1020 229 75 51 chr4 155615585 155615917 -28672745 + MER58B DNA MER1_type 2 341 0 29 47 0 0 chr4 155615950 155615993 -28672669 + AT_rich Low_complexity Low_complexity 1 43 0 387 287 7 56 chr4 155616040 155616183 -28672479 + L2 LINE L2 3159 3294 -19 404 328 99 22 chr4 155616254 155616486 -28672176 - MIR SINE MIR -10 252 3 309 175 100 12 chr4 155616538 155616618 -28672044 + L1ME4a LINE L1 5962 6048 -73 226 322 61 35 chr4 155618565 155618680 -28669982 - MIR3 SINE MIR -31 177 60 264 87 152 0 chr4 155619035 155619081 -28669581 + MADE1 DNA Mariner 1 53 -27 * 2656 103 86 12 chr4 155619080 155619498 -28669164 - MER4D LTR ERV1 -382 521 73 8585 148 11 17 chr4 155619514 155622166 -28666496 - L1PB1 LINE L1 0 6151 3512 1241 239 66 75 chr4 155622186 155622612 -28666050 - MLT2B3 LTR ERVL 0 554 133 192 420 31 5 chr4 155622782 155623006 -28665656 - MIR SINE MIR -12 250 21 203 320 0 20 chr4 155625035 155625085 -28663577 - MIR SINE MIR -141 67 19 25 31 0 0 chr4 155628186 155628218 -28660444 + AT_rich Low_complexity Low_complexity 1 32 0 24 67 0 0 chr4 155629829 155629874 -28658788 + AT_rich Low_complexity Low_complexity 1 45 0 1092 144 77 0 chr4 155630354 155630549 -28658113 + L1PA16 LINE L1 5957 6166 0 639 228 165 21 chr4 155630720 155630957 -28657705 + LTR37B LTR ERV1 198 468 0 2168 115 3 0 chr4 155631060 155631355 -28657307 - AluSx SINE Alu -16 296 1 377 253 0 21 chr4 155631376 155631471 -28657191 - MIR3 SINE MIR -33 175 83 2122 28 0 64 chr4 155632674 155632956 -28655706 + L1PA7 LINE L1 5885 6148 -6 650 226 12 6 chr4 155633818 155633982 -28654680 - L1 LINE L1 -2671 3475 3311 335 134 90 0 chr4 155633982 155634049 -28654613 - MER4B LTR ERV1 -537 73 1 358 294 7 37 chr4 155634066 155634202 -28654460 - MIR SINE MIR -76 186 55 306 244 59 74 chr4 155634828 155634963 -28653699 - MIR SINE MIR -25 237 105 1486 258 50 16 chr4 155634964 155635340 -28653322 - LTR40a LTR ERVL 0 519 131 2451 63 0 3 chr4 155635377 155635678 -28652984 + AluY SINE Alu 1 300 -11 231 333 54 43 chr4 155635731 155635824 -28652838 - MIR SINE MIR -154 108 15 1520 145 62 40 chr4 155637388 155637664 -28650998 - AluJo SINE Alu -30 282 1 456 313 62 29 chr4 155637668 155637940 -28650722 - L1M4 LINE L1 -757 5389 5109 22 0 0 0 chr4 155637954 155637976 -28650686 + AT_rich Low_complexity Low_complexity 1 22 0 1672 179 3 36 chr4 155637976 155638283 -28650379 - AluJo SINE Alu -15 297 1 751 263 49 4 chr4 155638899 155639146 -28649516 + MIR SINE MIR 1 258 -4 37 39 0 0 chr4 155639192 155639243 -28649419 + AT_rich Low_complexity Low_complexity 1 51 0 210 333 99 27 chr4 155639301 155639412 -28649250 + L2 LINE L2 3112 3230 -42 23 0 0 0 chr4 155639600 155639623 -28649039 + AT_rich Low_complexity Low_complexity 1 23 0 257 239 82 75 chr4 155639777 155639911 -28648751 - L2 LINE L2 -1 3271 3137 201 408 72 22 chr4 155641819 155642138 -28646524 + L2 LINE L2 2330 2664 -650 2159 234 63 35 chr4 155642275 155643109 -28645553 - L1MC5 LINE L1 -44 7917 7060 3389 162 11 1 chr4 155693321 155694391 -28594271 + L1P5 LINE L1 4590 5667 -484 2311 92 3 0 chr4 155694770 155695074 -28593588 - AluY SINE Alu -2 309 5 1415 118 50 5 chr4 155695160 155695380 -28593282 - MER30 DNA MER1_type 0 230 1 631 288 72 10 chr4 155695417 155695657 -28593005 + MIR SINE MIR 3 254 -8 19687 53 3 15 chr4 155696004 155698369 -28590293 - L1P LINE L1 -1977 4169 1841 2117 104 0 0 chr4 155698369 155698679 -28589983 + AluY SINE Alu 1 311 0 19687 53 3 15 chr4 155698679 155699069 -28589593 - L1P LINE L1 -4305 1841 1448 585 125 0 10 chr4 155699227 155699346 -28589316 - L1PA14 LINE L1 -106 6055 5938 949 246 89 58 chr4 155699848 155700010 -28588652 + L1MC4 LINE L1 7504 7660 -335 2132 105 34 0 chr4 155700010 155700137 -28588525 + AluSg SINE Alu 1 122 -188 243 0 0 0 chr4 155700137 155700164 -28588498 + (TA)n Simple_repeat Simple_repeat 2 28 0 2132 105 34 0 chr4 155700164 155700331 -28588331 + AluSg SINE Alu 122 305 -5 949 246 89 58 chr4 155700331 155700702 -28587960 + L1MC4 LINE L1 7660 7995 0 324 0 0 0 chr4 155700861 155700897 -28587765 + (TG)n Simple_repeat Simple_repeat 1 36 0 10013 37 6 1 chr4 155701447 155703460 -28585202 + L1PA5 LINE L1 4135 6153 -1 199 402 8 8 chr4 155703992 155704114 -28584548 + MIR3 SINE MIR 40 161 -47 350 265 140 71 chr4 155704293 155704715 -28583947 + MLT1L LTR MaLR 8 458 -157 202 268 0 49 chr4 155705041 155705123 -28583539 + CT-rich Low_complexity Low_complexity 3 80 0 * 338 261 40 23 chr4 155705077 155705253 -28583409 + T-rich Low_complexity Low_complexity 2 180 0 27 0 0 0 chr4 155705617 155705644 -28583018 + AT_rich Low_complexity Low_complexity 1 27 0 205 302 19 0 chr4 155706530 155706583 -28582079 - L2 LINE L2 -255 3058 3005 22 0 0 0 chr4 155706718 155706740 -28581922 + AT_rich Low_complexity Low_complexity 1 22 0 2391 78 0 0 chr4 155706753 155707049 -28581613 - AluSg SINE Alu -14 296 1 232 301 158 8 chr4 155707342 155707475 -28581187 + L2 LINE L2 2221 2373 -941 2514 36 3 0 chr4 155707763 155708066 -28580596 - L1PA4 LINE L1 -3 6152 5849 2226 92 34 0 chr4 155708428 155708721 -28579941 - AluSp SINE Alu -10 303 1 645 321 101 49 chr4 155708813 155709615 -28579047 + L2 LINE L2 2468 3308 -5 359 319 44 16 chr4 155711944 155712126 -28576536 + L2 LINE L2 2791 2977 -337 292 211 23 40 chr4 155712233 155712408 -28576254 + (TAA)n Simple_repeat Simple_repeat 3 174 0 266 318 134 11 chr4 155712438 155712617 -28576045 + MIR SINE MIR 13 213 -49 2462 73 3 3 chr4 155712792 155713094 -28575568 + AluSp SINE Alu 1 302 -11 2471 142 36 28 chr4 155714918 155715420 -28573242 + L1PA16 LINE L1 5668 6173 0 21 0 0 0 chr4 155715558 155715579 -28573083 + AT_rich Low_complexity Low_complexity 1 21 0 1186 204 64 36 chr4 155716012 155716292 -28572370 + AluJo SINE Alu 1 288 -14 1850 151 3 20 chr4 155718145 155718449 -28570213 - AluJb SINE Alu -13 299 1 207 258 34 34 chr4 155718827 155718916 -28569746 + MIR3 SINE MIR 117 205 -3 204 40 0 0 chr4 155719077 155719102 -28569560 + (TA)n Simple_repeat Simple_repeat 2 26 0 2192 102 0 30 chr4 155719102 155719406 -28569256 - AluSq SINE Alu -18 295 1 181 278 153 0 chr4 155720597 155720669 -28567993 + MIR SINE MIR 64 146 -116 452 313 90 26 chr4 155720757 155720990 -28567672 + MIR SINE MIR 3 250 -12 228 246 154 18 chr4 155721303 155721413 -28567249 + L1PB4 LINE L1 6015 6139 -17 2240 102 0 0 chr4 155721573 155721905 -28566757 - L1P LINE L1 -4759 1387 1056 685 207 8 0 chr4 155722331 155722452 -28566210 + FLAM_C SINE Alu 4 125 -8 45 19 0 0 chr4 155722592 155722644 -28566018 + AT_rich Low_complexity Low_complexity 1 52 0 3655 36 7 2 chr4 155725388 155725836 -28562826 - L1PA2 LINE L1 0 6155 5706 23 68 0 0 chr4 155726250 155726294 -28562368 + AT_rich Low_complexity Low_complexity 1 44 0 199 239 0 0 chr4 155727656 155727702 -28560960 + L2 LINE L2 3227 3272 0 235 368 0 11 chr4 155727793 155727888 -28560774 - MER5A DNA MER1_type -50 139 46 416 213 63 8 chr4 155728632 155728759 -28559903 - MER103 DNA DNA 0 166 33 859 219 27 16 chr4 155728840 155729027 -28559635 + MER5A DNA MER1_type 1 189 0 364 335 13 26 chr4 155729101 155729256 -28559406 - MER5A DNA MER1_type -11 178 26 2294 104 0 3 chr4 155729494 155729793 -28558869 - AluSg SINE Alu -12 298 1 457 150 0 0 chr4 155730424 155730504 -28558158 - L1MA2 LINE L1 0 6304 6225 2135 159 21 42 chr4 155731614 155732048 -28556614 + MSTB1 LTR MaLR 1 425 -7 418 255 29 0 chr4 155732075 155732177 -28556485 + MIR SINE MIR 115 219 -43 21 57 0 0 chr4 155732253 155732288 -28556374 + AT_rich Low_complexity Low_complexity 1 35 0 385 325 59 12 chr4 155732464 155732633 -28556029 + MIR SINE MIR 86 262 0 2087 126 27 0 chr4 155732716 155733009 -28555653 + AluSx SINE Alu 1 301 -11 1291 251 50 29 chr4 155733394 155733849 -28554813 + MER74B LTR ERVL 76 540 -82 279 284 91 17 chr4 155733695 155733871 -28554791 - MER88 LTR ERVL -198 266 78 * 1264 218 51 30 chr4 155734175 155734242 -28554420 - MLT1C LTR MaLR 0 467 403 2194 99 10 3 chr4 155734242 155734545 -28554117 + AluSc SINE Alu 1 305 -4 1264 218 51 30 chr4 155734545 155734871 -28553791 - MLT1C LTR MaLR -64 403 66 21 36 0 0 chr4 155735884 155735912 -28552750 + AT_rich Low_complexity Low_complexity 1 28 0 2292 78 0 23 chr4 155736516 155736822 -28551840 - AluY SINE Alu -12 299 1 1623 166 29 26 chr4 155737076 155737492 -28551170 - pTR5 LTR ERV1 -1279 1159 743 458 209 209 0 chr4 155737502 155737612 -28551050 + MER5A DNA MER1_type 57 189 0 634 251 83 112 chr4 155737733 155738278 -28550384 + MLT2F LTR ERVL 58 586 -77 326 289 12 60 chr4 155738280 155738446 -28550216 + MLT2E LTR ERVL 471 628 0 500 192 83 8 chr4 155738511 155738631 -28550031 + THE1C LTR MaLR 2 130 -245 1859 134 68 3 chr4 155739311 155739603 -28549059 + AluSx SINE Alu 1 311 -1 1967 138 10 10 chr4 155740192 155740496 -28548166 + AluSc SINE Alu 4 307 -2 439 214 223 0 chr4 155740969 155741072 -28547590 - MER5A DNA MER1_type -3 186 61 37 0 0 0 chr4 155741072 155741109 -28547553 + AT_rich Low_complexity Low_complexity 1 37 0 798 144 0 65 chr4 155741109 155741248 -28547414 - FLAM_C SINE Alu -3 130 1 294 293 0 0 chr4 155741248 155741323 -28547339 - MER5A DNA MER1_type -114 75 1 517 206 100 62 chr4 155741534 155741694 -28546968 + MLT1H LTR MaLR 382 547 -2 423 257 7 52 chr4 155741703 155741735 -28546927 - MIR SINE MIR -10 252 220 1530 216 71 6 chr4 155741735 155742086 -28546576 - MLT1A2 LTR MaLR 0 374 1 423 257 7 52 chr4 155742086 155742189 -28546473 - MIR SINE MIR -42 220 123 28 29 0 0 chr4 155742582 155742617 -28546045 + AT_rich Low_complexity Low_complexity 1 35 0 598 218 43 21 chr4 155742763 155742951 -28545711 - MER95 LTR ERV 0 431 240 285 98 0 0 chr4 155743618 155743659 -28545003 + (A)n Simple_repeat Simple_repeat 1 41 0 2122 155 3 3 chr4 155743879 155744234 -28544428 + THE1A LTR MaLR 1 355 0 1019 148 6 6 chr4 155744467 155744629 -28544033 - FRAM SINE Alu -15 161 1 945 285 90 9 chr4 155745123 155745642 -28543020 - MLT2E LTR ERVL -20 608 1 21 57 0 0 chr4 155746885 155746920 -28541742 + AT_rich Low_complexity Low_complexity 1 35 0 333 314 129 29 chr4 155747365 155747706 -28540956 - L2 LINE L2 -609 2705 2331 2273 122 0 0 chr4 155747844 155748179 -28540483 - L1PB1 LINE L1 -8 6143 5809 273 206 32 16 chr4 155748302 155748365 -28540297 + L2 LINE L2 3235 3298 -15 2110 185 78 15 chr4 155748573 155749048 -28539614 + MLT1D LTR MaLR 1 505 0 439 328 42 16 chr4 155749321 155749513 -28539149 - MIR SINE MIR -30 232 36 1177 289 44 24 chr4 155750035 155750109 -28538553 - L1MEc LINE L1 -5739 657 586 3025 125 100 0 chr4 155750109 155750588 -28538074 - MER1A DNA MER1_type 0 527 1 1177 289 44 24 chr4 155750588 155750969 -28537693 - L1MEc LINE L1 -5810 586 193 825 76 8 8 chr4 155750966 155751097 -28537565 + THE1C-int LTR MaLR 1444 1574 -6 * 2510 115 11 16 chr4 155751104 155751479 -28537183 + THE1C LTR MaLR 3 375 0 342 141 128 13 chr4 155751479 155751557 -28537105 - L1M2 LINE L1 -721 5591 5505 2053 100 24 24 chr4 155753305 155753644 -28535018 - MER39 LTR ERV1 -10 697 359 196 182 164 0 chr4 155754220 155754275 -28534387 - L3b LINE CR1 -173 1410 1347 22 70 0 0 chr4 155754961 155755004 -28533658 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr4 155755330 155755351 -28533311 + AT_rich Low_complexity Low_complexity 1 21 0 276 186 0 0 chr4 155755454 155755497 -28533165 + Tigger3(Golem) DNA MER2_type 2986 3028 -1 1545 258 57 28 chr4 155755646 155755981 -28532681 - L1M4c LINE L1 -3568 2814 2490 1661 181 3 29 chr4 155755981 155756296 -28532366 - AluJb SINE Alu -5 307 1 1545 258 57 28 chr4 155756296 155756810 -28531852 - L1M4c LINE L1 -3892 2490 1963 232 29 0 0 chr4 155756873 155756908 -28531754 - Alu SINE Alu 0 308 274 317 264 47 9 chr4 155756908 155757014 -28531648 - L1M4c LINE L1 -4670 1893 1784 572 251 38 26 chr4 155757058 155757313 -28531349 - L1M4c LINE L1 -4786 1596 1284 2516 143 38 7 chr4 155757709 155758128 -28530534 + MSTB1 LTR MaLR 1 432 0 23 68 0 0 chr4 155758271 155758315 -28530347 + AT_rich Low_complexity Low_complexity 1 44 0 379 115 0 39 chr4 155758911 155758989 -28529673 + (GAAA)n Simple_repeat Simple_repeat 3 77 0 40 0 0 0 chr4 155759032 155759072 -28529590 + AT_rich Low_complexity Low_complexity 1 40 0 2396 104 0 0 chr4 155759134 155759443 -28529219 - AluSq SINE Alu -4 309 1 30 0 0 0 chr4 155759488 155759518 -28529144 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 155759706 155759734 -28528928 + AT_rich Low_complexity Low_complexity 1 28 0 6940 63 10 0 chr4 155760463 155761958 -28526704 + L1PA8 LINE L1 4665 6169 -3 327 136 0 0 chr4 155762033 155762092 -28526570 + (T)n Simple_repeat Simple_repeat 1 59 0 1900 151 14 0 chr4 155762229 155762521 -28526141 - AluJb SINE Alu -7 305 10 668 333 138 19 chr4 155762539 155763004 -28525658 + L2 LINE L2 2140 2659 -655 402 221 0 96 chr4 155763194 155763298 -28525364 + L2 LINE L2 3179 3272 0 1251 178 91 40 chr4 155763914 155764189 -28524473 - MER93b LTR ERV1 -21 352 64 1233 193 20 128 chr4 155764405 155764821 -28523841 + MLT1B LTR MaLR 1 399 -29 202 244 0 0 chr4 155764849 155764894 -28523768 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 869 247 78 47 chr4 155766149 155766679 -28521983 + MER34B LTR ERV1 5 537 -5 613 263 121 45 chr4 155767295 155767519 -28521143 - MIR SINE MIR -5 257 17 3126 66 12 0 chr4 155767647 155768216 -28520446 - L1PA8 LINE L1 -526 5646 5071 3988 64 2 0 chr4 155768216 155768726 -28519936 + L1PA8 LINE L1 5659 6172 0 2373 73 3 7 chr4 155770249 155770551 -28518111 - AluY SINE Alu -10 301 1 189 349 16 0 chr4 155771446 155771509 -28517153 + MIR SINE MIR 86 149 -113 558 247 38 32 chr4 155772209 155772367 -28516295 - MER5B DNA MER1_type -3 175 17 291 349 47 27 chr4 155774096 155774245 -28514417 + MER5B DNA MER1_type 27 178 0 5428 65 0 4 chr4 155774246 155774996 -28513666 - L1P LINE L1 -2726 3420 2674 661 214 0 7 chr4 155775279 155775433 -28513229 - L1P LINE L1 -3343 2803 2651 15877 36 9 3 chr4 155775433 155778145 -28510517 + L1PA5 LINE L1 3427 6154 0 204 200 0 36 chr4 155779969 155780024 -28508638 + T-rich Low_complexity Low_complexity 1 53 0 1162 253 45 51 chr4 155780570 155780787 -28507875 + L1ME2 LINE L1 4650 4867 -1279 219 36 0 0 chr4 155780787 155780815 -28507847 + (CAATT)n Simple_repeat Simple_repeat 2 29 0 1162 253 45 51 chr4 155780815 155781083 -28507579 + L1ME2 LINE L1 4867 5132 -1014 19968 150 58 44 chr4 155781094 155784976 -28503686 + L1MA2 LINE L1 15 3989 -3576 3910 107 19 0 chr4 155784976 155785346 -28503316 - L1PA14 LINE L1 -3 6158 5772 219 69 0 0 chr4 155785346 155785375 -28503287 + (TA)n Simple_repeat Simple_repeat 2 30 0 3910 107 19 0 chr4 155785375 155785576 -28503086 - L1PA14 LINE L1 -389 5772 5576 19968 150 58 44 chr4 155785576 155786563 -28502099 + L1MA2 LINE L1 3989 4960 -2605 5894 157 29 11 chr4 155786563 155788475 -28500187 + L1MA2 LINE L1 5653 7573 -1 1960 117 21 12 chr4 155788475 155788801 -28499861 + L1MA2 LINE L1 5973 6301 -3 980 243 27 4 chr4 155788841 155789100 -28499562 + L1ME2 LINE L1 5266 5530 -640 3542 42 0 66 chr4 155789114 155789613 -28499049 - L1PA8 LINE L1 -4 6168 5703 970 59 0 0 chr4 155789667 155789785 -28498877 - L1PA8 LINE L1 -476 5696 5579 2411 147 30 8 chr4 155789981 155790611 -28498051 - L1P3 LINE L1 -531 5641 5000 1500 217 3 0 chr4 155790602 155790925 -28497737 + L1ME2 LINE L1 5586 5909 -255 * 935 118 147 6 chr4 155791708 155791878 -28496784 - L1MA5 LINE L1 -35 6265 6072 332 308 41 31 chr4 155792077 155792272 -28496390 - HAL1b LINE L1 -469 879 683 2104 114 21 0 chr4 155792324 155792614 -28496048 - AluSq SINE Alu -17 296 1 2169 119 0 0 chr4 155792626 155792912 -28495750 - AluSq SINE Alu -24 289 4 1031 132 0 0 chr4 155792924 155793083 -28495579 - L1MA4A LINE L1 -362 5941 5783 192 179 0 0 chr4 155793086 155793125 -28495537 + (TA)n Simple_repeat Simple_repeat 1 39 0 330 300 0 0 chr4 155793125 155793215 -28495447 - L1MC4 LINE L1 -1339 6703 6614 1444 133 0 8 chr4 155793224 155793458 -28495204 - L1P5 LINE L1 -365 5791 5560 448 246 286 5 chr4 155794969 155795168 -28493494 - MIR SINE MIR -2 260 6 1881 111 4 4 chr4 155795969 155796222 -28492440 + AluSx SINE Alu 7 259 -53 2116 121 0 0 chr4 155796250 155796530 -28492132 + AluSp SINE Alu 13 292 -21 336 325 55 1 chr4 155797326 155797430 -28491232 + MIR SINE MIR 38 146 -62 257 254 42 0 chr4 155798348 155798419 -28490243 + MIR SINE MIR 120 193 -69 425 318 30 0 chr4 155798811 155798943 -28489719 - L2 LINE L2 0 3272 3137 259 545 14 44 chr4 155798950 155799225 -28489437 - L2 LINE L2 -645 2669 2403 1544 147 87 4 chr4 155800088 155800353 -28488309 - AluJb SINE Alu -17 295 9 261 191 107 0 chr4 155800395 155800479 -28488183 - Tigger1 DNA MER2_type -1 2417 2325 189 408 33 0 chr4 155800633 155800753 -28487909 + L2 LINE L2 2925 3048 -224 1618 220 26 104 chr4 155800824 155801439 -28487223 - LTR9 LTR ERV1 0 612 51 2267 108 16 0 chr4 155801439 155801746 -28486916 - AluSq SINE Alu -1 312 1 1618 220 26 104 chr4 155801746 155801794 -28486868 - LTR9 LTR ERV1 -561 51 1 478 331 74 36 chr4 155801857 155802598 -28486064 - L2 LINE L2 -22 3291 2521 1896 107 29 13 chr4 155803530 155804049 -28484613 - L1MC1 LINE L1 -1 6332 5671 5517 101 95 86 chr4 155804822 155806367 -28482295 - pTR5 LTR ERV1 0 2438 172 2206 87 17 3 chr4 155806467 155806756 -28481906 + AluSq SINE Alu 1 293 -20 227 143 71 54 chr4 155806774 155806830 -28481832 - L1MC4 LINE L1 -5 8037 7981 1435 235 248 6 chr4 155806839 155807359 -28481303 - L1MC4 LINE L1 -153 7889 7244 2545 211 58 8 chr4 155807365 155807953 -28480709 - L1MC4 LINE L1 -953 7089 6473 27 73 0 0 chr4 155809133 155809188 -28479474 + AT_rich Low_complexity Low_complexity 1 55 0 229 121 0 52 chr4 155809202 155809260 -28479402 + (TTATA)n Simple_repeat Simple_repeat 5 59 0 592 224 8 37 chr4 155809275 155809409 -28479253 - MER7C DNA MER2_type -459 143 14 * 743 207 66 66 chr4 155809400 155809593 -28479069 + LTR37A LTR ERV1 85 280 -146 369 0 0 0 chr4 155809593 155809634 -28479028 + (TG)n Simple_repeat Simple_repeat 1 41 0 743 207 66 66 chr4 155809634 155809759 -28478903 + LTR37A LTR ERV1 279 403 -23 230 250 0 67 chr4 155809887 155809947 -28478715 + LTR48 LTR ERV1 156 211 -576 2529 7 0 0 chr4 155810578 155810851 -28477811 - AluYa5 SINE Alu -4 307 35 2357 109 0 0 chr4 155811200 155811512 -28477150 + AluSx SINE Alu 1 312 0 1868 177 17 3 chr4 155811519 155811875 -28476787 - MER46B DNA MER2_type 0 236 1 293 264 40 40 chr4 155812488 155812613 -28476049 + MLT1L LTR MaLR 491 615 0 240 291 79 71 chr4 155813592 155813719 -28474943 + MIR SINE MIR 21 148 -60 957 166 12 0 chr4 155813806 155813969 -28474693 - FRAM SINE Alu -11 165 1 21 0 0 0 chr4 155814629 155814650 -28474012 + AT_rich Low_complexity Low_complexity 1 21 0 743 170 18 61 chr4 155815466 155815631 -28473031 + FRAM SINE Alu 1 158 -8 225 200 20 0 chr4 155815689 155815739 -28472923 + Alu SINE Alu 246 296 -4 5531 151 31 23 chr4 155815903 155817338 -28471324 - L1MA6 LINE L1 -10 6290 4852 21 0 0 0 chr4 155818113 155818134 -28470528 + AT_rich Low_complexity Low_complexity 1 21 0 234 263 70 18 chr4 155818553 155818667 -28469995 + L1MC4a LINE L1 5815 5934 -1874 919 167 111 0 chr4 155819027 155819207 -28469455 - MER39 LTR ERV1 -507 200 1 1513 228 68 20 chr4 155819778 155820217 -28468445 + L1MEc LINE L1 61 520 -5876 36 62 0 0 chr4 155820307 155820371 -28468291 + AT_rich Low_complexity Low_complexity 1 64 0 438 303 190 14 chr4 155820758 155820969 -28467693 - MIR SINE MIR -10 252 5 1367 144 10 0 chr4 155821394 155821596 -28467066 + AluJb SINE Alu 1 204 -108 270 0 0 0 chr4 155821609 155821639 -28467023 + (CA)n Simple_repeat Simple_repeat 1 30 0 1131 212 49 49 chr4 155821647 155821968 -28466694 - MLT1A2 LTR MaLR -41 426 21 21 82 0 0 chr4 155822057 155822106 -28466556 + AT_rich Low_complexity Low_complexity 1 49 0 1187 170 28 0 chr4 155822609 155822821 -28465841 + MER20 DNA MER1_type 2 219 0 1838 137 165 0 chr4 155822868 155823190 -28465472 + MER39 LTR ERV1 3 377 -330 805 267 70 51 chr4 155823190 155823561 -28465101 + L2 LINE L2 1435 1812 -1502 1645 177 3 24 chr4 155823568 155823862 -28464800 - AluJo SINE Alu -24 288 1 1987 137 7 10 chr4 155824800 155825106 -28463556 - AluJb SINE Alu -7 305 1 2776 152 14 73 chr4 155825118 155825705 -28462957 - L1MA7 LINE L1 -1 6290 5739 795 308 21 8 chr4 155825793 155826030 -28462632 - MIR SINE MIR -20 242 3 43389 44 1 0 chr4 155826165 155831490 -28457172 + L1P LINE L1 2 5327 -819 712 158 99 0 chr4 155832092 155832244 -28456418 - L1MD3 LINE L1 -18 7977 7811 249 239 317 14 chr4 155832583 155832725 -28455937 + MIR SINE MIR 21 205 -57 242 322 0 17 chr4 155834982 155835088 -28453574 + CT-rich Low_complexity Low_complexity 1 104 0 216 200 0 0 chr4 155835110 155835155 -28453507 + (CA)n Simple_repeat Simple_repeat 2 46 0 1040 205 36 0 chr4 155836775 155836970 -28451692 - MER20 DNA MER1_type -17 202 1 201 39 0 0 chr4 155837006 155837032 -28451630 + (TTA)n Simple_repeat Simple_repeat 1 26 0 328 333 89 0 chr4 155838718 155838853 -28449809 + MIR3 SINE MIR 51 197 -11 32 0 0 0 chr4 155839267 155839299 -28449363 + AT_rich Low_complexity Low_complexity 1 32 0 3279 162 93 12 chr4 155839301 155839763 -28448899 - L1MA6 LINE L1 -9 6291 5755 539 29 14 0 chr4 155839763 155839832 -28448830 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 3279 162 93 12 chr4 155839832 155840048 -28448614 - L1MA6 LINE L1 -545 5755 5558 714 171 25 50 chr4 155840052 155840252 -28448410 + MER6 DNA MER2_type -61 865 0 230 188 0 0 chr4 155840252 155840300 -28448362 - L1MA6 LINE L1 -744 5559 5512 989 128 11 0 chr4 155840543 155840723 -28447939 - MER33 DNA MER1_type -7 356 175 522 184 0 0 chr4 155840723 155840826 -28447836 - L1PA16 LINE L1 -1 6165 6063 431 48 81 0 chr4 155840826 155840888 -28447774 + L1P4 LINE L1 5542 5608 -558 476 241 52 0 chr4 155840899 155841014 -28447648 - MER33 DNA MER1_type -262 62 1 768 251 157 58 chr4 155841990 155842353 -28446309 - MLT1I LTR MaLR -2 407 9 24 53 0 0 chr4 155843038 155843076 -28445586 + AT_rich Low_complexity Low_complexity 1 38 0 593 200 188 6 chr4 155845319 155845479 -28443183 + MER5A DNA MER1_type 1 189 0 7858 176 20 24 chr4 155847573 155847724 -28440938 - L1MA9 LINE L1 -9 6303 6153 221 95 0 24 chr4 155847724 155847766 -28440896 + (TTA)n Simple_repeat Simple_repeat 2 42 0 7858 176 20 24 chr4 155847766 155848087 -28440575 - L1MA9 LINE L1 -159 6153 5832 1695 127 3 65 chr4 155848087 155848378 -28440284 - AluSx SINE Alu -2 310 38 7858 176 20 24 chr4 155848378 155849043 -28439619 - L1MA9 LINE L1 -480 5832 5166 1803 14 0 0 chr4 155849043 155849250 -28439412 - L1PA3 LINE L1 0 6155 5949 7858 176 20 24 chr4 155849250 155849938 -28438724 - L1MA9 LINE L1 -1146 5166 4477 2256 96 0 34 chr4 155849938 155850261 -28438401 - AluSx SINE Alu 0 312 1 7858 176 20 24 chr4 155850261 155851003 -28437659 - L1MA9 LINE L1 -1835 4477 3742 6388 131 15 19 chr4 155851006 155851246 -28437416 - L1MA3 LINE L1 0 6305 6066 2720 14 0 0 chr4 155851246 155851542 -28437120 - AluY SINE Alu -3 308 13 6388 131 15 19 chr4 155851542 155852511 -28436151 - L1MA3 LINE L1 -239 6066 5102 1639 167 18 3 chr4 155852491 155852821 -28435841 - L1MA9 LINE L1 -2392 3754 3420 * 1403 129 58 0 chr4 155852821 155853046 -28435616 + MSTC LTR MaLR 1 238 -190 2247 209 104 9 chr4 155853147 155853715 -28434947 - L1MA9 LINE L1 -3312 2834 2213 402 319 9 0 chr4 155853771 155853887 -28434775 + MER45B DNA AcHobo 211 327 -713 9691 70 7 2 chr4 155853888 155855943 -28432719 + L1PA7 LINE L1 4087 6154 0 2268 217 54 9 chr4 155855990 155856524 -28432138 + MER45B DNA AcHobo 363 920 -120 1467 77 0 5 chr4 155856525 155856757 -28431905 + L1PA8 LINE L1 5953 6183 0 718 198 0 54 chr4 155856779 155856946 -28431716 + MER45B DNA AcHobo 883 1040 0 15403 118 13 38 chr4 155857175 155857280 -28431382 - Tigger1 DNA MER2_type -1 2417 2311 2046 173 81 5 chr4 155857280 155857674 -28430988 - MSTB LTR MaLR 0 426 3 15403 118 13 38 chr4 155857674 155859820 -28428842 - Tigger1 DNA MER2_type -107 2311 230 1871 112 31 0 chr4 155859820 155860080 -28428582 + AluSx SINE Alu 1 268 -44 15403 118 13 38 chr4 155860080 155860305 -28428357 - Tigger1 DNA MER2_type -2188 230 1 5209 163 37 16 chr4 155860544 155861637 -28427025 - L1MCc LINE L1 -766 6175 5061 35012 34 2 1 chr4 155861647 155866689 -28421973 - L1PA3 LINE L1 0 6155 1109 1488 167 8 4 chr4 155866689 155866947 -28421715 - L1MCc LINE L1 -1867 5074 4816 1871 165 51 2 chr4 155867292 155867908 -28420754 - L1M2 LINE L1 -660 5631 4992 * 2307 250 69 30 chr4 155867898 155868930 -28419732 - L1MCc LINE L1 -2965 3976 2905 1285 264 68 33 chr4 155869021 155869649 -28419013 - L1MCc LINE L1 -4226 2716 2111 732 186 108 41 chr4 155869649 155869843 -28418819 + MER3 DNA MER1_type 3 209 0 1285 264 68 33 chr4 155869843 155870232 -28418430 - L1MCc LINE L1 -4831 2111 1183 1472 279 10 10 chr4 155870234 155870650 -28418012 - L1MCc LINE L1 -5988 435 20 259 233 44 11 chr4 155870956 155871046 -28417616 + L1MD1 LINE L1 2369 2461 -3923 886 289 17 8 chr4 155871324 155871559 -28417103 + MIR SINE MIR 2 238 -24 1439 241 29 24 chr4 155871614 155871995 -28416667 + MLT1E2 LTR MaLR 5 387 -239 248 179 0 0 chr4 155872000 155872056 -28416606 + L1MD1 LINE L1 4119 4174 -2208 5029 156 48 7 chr4 155872060 155872980 -28415682 + L1MD1 LINE L1 5463 6407 -71 736 197 0 0 chr4 155873042 155873169 -28415493 + FLAM_C SINE Alu 1 127 -6 475 326 73 47 chr4 155873244 155873588 -28415074 + L1ME2 LINE L1 3839 4191 -1955 21 0 0 0 chr4 155873827 155873848 -28414814 + AT_rich Low_complexity Low_complexity 1 21 0 2202 94 7 0 chr4 155873852 155874128 -28414534 + AluSx SINE Alu 11 288 -24 189 0 0 0 chr4 155874128 155874149 -28414513 + (TA)n Simple_repeat Simple_repeat 2 22 0 26 0 0 0 chr4 155874256 155874282 -28414380 + AT_rich Low_complexity Low_complexity 1 26 0 474 296 14 52 chr4 155874512 155874803 -28413859 + L1ME2 LINE L1 5331 5610 -552 239 154 0 19 chr4 155874923 155874975 -28413687 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 534 227 154 2 chr4 155875398 155875602 -28413060 + L1ME2 LINE L1 5643 5868 -298 1013 190 87 47 chr4 155875656 155875958 -28412704 - MER45B DNA AcHobo 0 1040 726 1963 204 20 0 chr4 155875958 155876316 -28412346 - MLT1A1 LTR MaLR 0 365 1 * 2757 222 82 14 chr4 155876316 155876951 -28411711 - MER45B DNA AcHobo -311 729 51 312 213 88 0 chr4 155876975 155877055 -28411607 + L1ME2 LINE L1 6069 6155 -9 11388 189 90 8 chr4 155878518 155882333 -28406329 + L1PBa LINE L1 6 4318 -2544 1990 129 49 0 chr4 155882333 155882620 -28406042 + AluSq SINE Alu 1 301 -12 11388 189 90 8 chr4 155882620 155883728 -28404934 + L1PBa LINE L1 4318 5334 -1528 4397 219 43 17 chr4 155983792 155984960 -28303702 + L1M4 LINE L1 3519 4716 -1430 224 311 8 76 chr4 155985089 155985221 -28303441 - MIR SINE MIR -67 141 19 2046 93 45 0 chr4 155985260 155985528 -28303134 - AluSx SINE Alu -16 296 17 189 297 230 7 chr4 155987096 155987244 -28301418 + MIR SINE MIR 12 192 -70 261 57 0 0 chr4 155987628 155987663 -28300999 + (CA)n Simple_repeat Simple_repeat 2 36 0 1865 159 0 10 chr4 155988863 155989158 -28299504 + AluJo SINE Alu 1 292 -20 232 267 152 38 chr4 155989576 155989681 -28298981 + L2 LINE L2 3193 3309 -4 295 399 7 7 chr4 155990139 155990292 -28298370 + L2 LINE L2 2695 2847 -467 949 162 37 21 chr4 155990400 155990591 -28298071 - MLT1C LTR MaLR -270 197 4 194 333 53 0 chr4 155991306 155991363 -28297299 - MIR SINE MIR -167 95 36 1680 153 8 8 chr4 155991462 155991724 -28296938 + AluJb SINE Alu 34 295 -17 1728 166 29 19 chr4 155991790 155992097 -28296565 - AluJb SINE Alu -2 310 1 195 69 0 0 chr4 155992097 155992126 -28296536 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1304 218 3 32 chr4 155992133 155992418 -28296244 - AluJo SINE Alu -31 281 5 36 0 0 0 chr4 155992503 155992539 -28296123 + AT_rich Low_complexity Low_complexity 1 36 0 1674 117 0 40 chr4 155992886 155993155 -28295507 - AluSx SINE Alu 0 302 44 517 259 66 81 chr4 155993220 155993417 -28295245 - MLT1K LTR MaLR -90 498 305 226 275 183 17 chr4 155993806 155993926 -28294736 - MIR SINE MIR -12 250 111 232 367 73 25 chr4 155994067 155994342 -28294320 + L2 LINE L2 2471 2758 -556 477 297 108 42 chr4 155994492 155994778 -28293884 + L2 LINE L2 3004 3308 -5 328 177 152 13 chr4 155996085 155996164 -28292498 + MER103 DNA DNA 31 120 -46 231 36 0 0 chr4 155996231 155996259 -28292403 + (TGG)n Simple_repeat Simple_repeat 2 29 0 2035 100 7 11 chr4 155997956 155998257 -28290405 + AluSc SINE Alu 1 300 0 210 118 0 0 chr4 155998748 155998782 -28289880 + (CAG)n Simple_repeat Simple_repeat 2 35 0 236 53 26 0 chr4 155999321 155999359 -28289303 + (TG)n Simple_repeat Simple_repeat 2 40 0 2879 16 0 0 chr4 155999866 156000182 -28288480 - AluYb8 SINE Alu -2 316 1 263 237 0 0 chr4 156000227 156000286 -28288376 + (TG)n Simple_repeat Simple_repeat 1 59 0 259 222 0 111 chr4 156000438 156000537 -28288125 + L2 LINE L2 3185 3272 0 223 310 23 11 chr4 156000539 156000626 -28288036 - L2 LINE L2 -1026 2288 2201 221 275 126 60 chr4 156000624 156000958 -28287704 - L2 LINE L2 -1229 2085 1730 * 21 57 0 0 chr4 156002566 156002601 -28286061 + AT_rich Low_complexity Low_complexity 1 35 0 279 0 0 0 chr4 156003908 156003939 -28284723 + (TC)n Simple_repeat Simple_repeat 2 32 0 2052 113 22 50 chr4 156006121 156006440 -28282222 + AluSx SINE Alu 1 310 -2 1786 176 31 0 chr4 156007831 156008121 -28280541 - AluJb SINE Alu -13 299 1 1070 118 113 0 chr4 156008171 156008357 -28280305 - L1MC2 LINE L1 0 6344 6138 2839 146 143 113 chr4 156008362 156008769 -28279893 - L1MC3 LINE L1 -196 7589 7196 227 245 0 0 chr4 156008769 156008822 -28279840 - MLT1F1 LTR MaLR -480 87 35 2839 146 143 113 chr4 156008822 156008952 -28279710 - L1MC3 LINE L1 -589 7196 7071 1495 170 19 39 chr4 156008952 156009264 -28279398 - AluJo SINE Alu -2 310 5 2839 146 143 113 chr4 156009264 156009472 -28279190 - L1MC3 LINE L1 -714 7071 6767 197 292 83 52 chr4 156009653 156009845 -28278817 - L2 LINE L2 -753 2561 2364 2358 114 0 0 chr4 156009986 156010293 -28278369 - AluSx SINE Alu -5 307 1 2135 162 43 34 chr4 156010618 156011032 -28277630 - LTR52 LTR ERVL -3 418 1 2333 167 46 3 chr4 156011164 156011639 -28277023 + REP3 LTR ERV 4 550 -12 233 246 79 16 chr4 156011846 156011972 -28276690 + L1M4 LINE L1 4390 4523 -1623 311 96 0 39 chr4 156012243 156012295 -28276367 + L1PB4 LINE L1 6098 6147 -9 29 28 0 0 chr4 156012301 156012337 -28276325 + AT_rich Low_complexity Low_complexity 1 36 0 391 307 182 30 chr4 156012994 156013225 -28275437 - L2 LINE L2 0 3272 3007 556 237 22 36 chr4 156013734 156013873 -28274789 + L2 LINE L2 3171 3307 -6 419 288 171 6 chr4 156014138 156014308 -28274354 + L2 LINE L2 3116 3313 0 528 181 7 139 chr4 156015006 156015150 -28273512 - FLAM_A SINE Alu -10 132 8 184 326 0 0 chr4 156015167 156015213 -28273449 + MER5A DNA MER1_type 136 181 -8 226 321 37 12 chr4 156015692 156015773 -28272889 - MIR SINE MIR -21 241 159 410 168 110 48 chr4 156015989 156016124 -28272538 - MIR SINE MIR -62 146 29 813 102 8 16 chr4 156016194 156016321 -28272341 - MER39 LTR ERV1 0 707 582 13203 119 108 5 chr4 156016324 156018438 -28270224 + L1M1 LINE L1 16 2347 -5218 3158 172 39 20 chr4 156018438 156019025 -28269637 - MER39 LTR ERV1 -109 598 1 249 349 0 0 chr4 156019415 156019498 -28269164 - L2 LINE L2 -3 3269 3187 300 164 0 0 chr4 156020673 156020728 -28267934 - L1MB2 LINE L1 -1 6170 6116 289 101 62 186 chr4 156020729 156020858 -28267804 + MADE1 DNA Mariner 1 52 -28 394 330 87 5 chr4 156022046 156022231 -28266431 + MIR SINE MIR 15 214 -48 5387 186 80 37 chr4 156022517 156022972 -28265690 - MER45R DNA AcHobo 0 1581 1147 2446 61 0 0 chr4 156022972 156023265 -28265397 - L1PA5 LINE L1 0 6154 5862 5387 186 80 37 chr4 156023265 156024097 -28264565 - MER45R DNA AcHobo -434 1147 239 3392 169 60 25 chr4 156024135 156024788 -28263874 - MER39 LTR ERV1 -28 679 4 846 200 24 6 chr4 156024812 156024977 -28263685 - MER45 DNA AcHobo -1412 169 2 2354 80 0 3 chr4 156025054 156025343 -28263319 - AluSc SINE Alu -21 288 1 313 111 93 0 chr4 156025548 156025602 -28263060 - LTR54 LTR ERV1 -48 462 404 241 210 49 62 chr4 156025804 156025885 -28262777 + MER116 DNA Mariner 1 80 0 313 333 18 9 chr4 156026259 156026373 -28262289 + MIR SINE MIR 24 138 -70 1819 140 0 21 chr4 156027442 156027728 -28260934 + AluJb SINE Alu 1 280 -32 23 0 0 0 chr4 156027733 156027756 -28260906 + AT_rich Low_complexity Low_complexity 1 23 0 266 218 128 0 chr4 156029726 156029804 -28258858 - MIR SINE MIR -65 197 110 243 208 21 0 chr4 156029849 156029897 -28258765 - MER94 DNA DNA -9 125 77 2341 87 3 0 chr4 156030437 156030735 -28257927 - AluSc SINE Alu -10 299 1 774 186 12 37 chr4 156030831 156030992 -28257670 - MER58A DNA MER1_type 0 157 1 625 209 0 126 chr4 156031824 156032015 -28256647 - MER20 DNA MER1_type 0 219 53 1236 128 50 18 chr4 156032283 156032501 -28256161 + L1MA5 LINE L1 6001 6225 -75 433 208 223 30 chr4 156033371 156033568 -28255094 - MER112 DNA MER1_type -25 235 1 363 272 83 48 chr4 156033718 156033810 -28254852 + L1M4 LINE L1 2770 2857 -3289 1576 180 40 23 chr4 156033810 156034110 -28254552 - AluJb SINE Alu -7 305 1 363 272 83 48 chr4 156034110 156034245 -28254417 + L1M4 LINE L1 2857 3005 -3141 236 280 20 46 chr4 156034432 156034751 -28253911 + CT-rich Low_complexity Low_complexity 1 310 0 665 111 20 0 chr4 156034946 156035045 -28253617 - L1MB2 LINE L1 -2 6169 6069 24 67 0 0 chr4 156035236 156035281 -28253381 + AT_rich Low_complexity Low_complexity 1 45 0 2495 74 3 0 chr4 156036000 156036309 -28252353 - AluSx SINE Alu -2 310 1 2074 119 0 3 chr4 156036375 156036668 -28251994 - AluSq SINE Alu -21 292 1 2005 152 3 0 chr4 156036981 156037283 -28251379 - AluSx SINE Alu -9 303 1 572 260 48 45 chr4 156040299 156040737 -28247925 - LTR33 LTR ERVL 0 521 25 23 0 0 0 chr4 156042526 156042549 -28246113 + AT_rich Low_complexity Low_complexity 1 23 0 889 160 0 0 chr4 156042805 156042930 -28245732 + FLAM_C SINE Alu 2 126 -7 610 228 47 0 chr4 156043167 156043294 -28245368 - FLAM_A SINE Alu 0 133 1 692 258 111 9 chr4 156043968 156044185 -28244477 + MIR SINE MIR 13 251 -11 1313 185 106 38 chr4 156044186 156044451 -28244211 + AluJo SINE Alu 1 283 -19 21 0 0 0 chr4 156044452 156044473 -28244189 + AT_rich Low_complexity Low_complexity 1 21 0 2013 116 12 35 chr4 156044593 156044912 -28243750 + AluSx SINE Alu 1 312 0 468 0 0 0 chr4 156045312 156045364 -28243298 + (TA)n Simple_repeat Simple_repeat 2 53 0 272 260 0 27 chr4 156045869 156045942 -28242720 - MER112 DNA MER1_type -173 87 17 196 331 164 20 chr4 156046038 156046343 -28242319 + L2 LINE L2 2624 2972 -342 342 250 98 53 chr4 156046424 156046556 -28242106 + L2 LINE L2 3125 3262 -10 855 160 0 7 chr4 156047618 156047762 -28240900 + FRAM SINE Alu 4 146 -30 1387 265 121 72 chr4 156047856 156049007 -28239655 + L1MEd LINE L1 47 1253 -4866 7836 42 3 0 chr4 156049418 156050426 -28238236 + L1PA5 LINE L1 5139 6154 0 473 174 6 34 chr4 156050988 156051166 -28237496 + CT-rich Low_complexity Low_complexity 3 175 0 224 128 0 21 chr4 156051175 156051222 -28237440 + (TCTCCC)n Simple_repeat Simple_repeat 3 48 0 10050 41 5 143 chr4 156051231 156052838 -28235824 + SVA Other Other 2 1386 0 27 0 0 0 chr4 156052893 156052920 -28235742 + AT_rich Low_complexity Low_complexity 1 27 0 2583 53 0 0 chr4 156053060 156053364 -28235298 - AluY SINE Alu -7 304 1 1777 134 65 57 chr4 156054455 156054680 -28233982 - THE1C LTR MaLR 0 375 144 2056 121 0 48 chr4 156054680 156054993 -28233669 + AluSx SINE Alu 1 298 -14 1777 134 65 57 chr4 156054993 156055139 -28233523 - THE1C LTR MaLR -231 144 1 517 233 182 0 chr4 156055502 156055661 -28233001 - MIR SINE MIR -52 210 23 2367 92 3 3 chr4 156057276 156057582 -28231080 + AluSx SINE Alu 1 306 -6 186 330 193 0 chr4 156058240 156058328 -28230334 - L2 LINE L2 -5 3267 3163 1433 186 47 0 chr4 156058451 156058725 -28229937 + AluSx SINE Alu 21 307 -5 1697 162 27 27 chr4 156058732 156059029 -28229633 + AluJo SINE Alu 1 297 -15 1351 144 90 8 chr4 156061964 156062220 -28226442 - AluJb SINE Alu -9 303 27 380 329 85 0 chr4 156062835 156063000 -28225662 + MIR SINE MIR 3 184 -62 609 260 142 5 chr4 156063086 156063290 -28225372 + MIR SINE MIR 31 262 0 1934 167 3 7 chr4 156063988 156064294 -28224368 - AluJb SINE Alu -7 305 1 31748 91 13 55 chr4 156066665 156070949 -28217713 - L1PA7 LINE L1 0 6469 2245 1191 95 0 6 chr4 156070949 156071107 -28217555 - AluSg/x SINE Alu -8 301 145 31748 91 13 55 chr4 156071107 156073254 -28215408 - L1PA7 LINE L1 -4224 2245 8 2010 224 67 82 chr4 156077982 156078518 -28210144 + MER20B DNA MER1_type 36 560 -223 2237 107 0 3 chr4 156078518 156078808 -28209854 - AluSq SINE Alu -24 289 1 2010 224 67 82 chr4 156078808 156078999 -28209663 + MER20B DNA MER1_type 560 752 -31 263 195 91 39 chr4 156079316 156079393 -28209269 - MIR SINE MIR -33 229 149 1061 146 12 12 chr4 156079395 156079566 -28209096 - FRAM SINE Alu -13 163 1 2197 100 0 0 chr4 156079581 156079910 -28208752 + AluY SINE Alu 1 329 0 195 317 172 27 chr4 156079949 156080135 -28208527 + L2 LINE L2 2827 3039 -233 531 238 159 26 chr4 156080150 156080301 -28208361 + MER5A DNA MER1_type 19 189 0 2110 205 47 32 chr4 156081385 156081719 -28206943 + L1MC4 LINE L1 7359 7705 -337 1651 159 14 11 chr4 156081719 156082028 -28206634 - AluJo SINE Alu 0 318 9 2110 205 47 32 chr4 156082028 156082185 -28206477 + L1MC4 LINE L1 7705 7858 -184 1111 149 0 6 chr4 156082218 156082386 -28206276 + FAM SINE Alu 1 48 -1 342 243 124 18 chr4 156082391 156082560 -28206102 + L1MC4 LINE L1 7856 8042 0 239 300 36 57 chr4 156083173 156083313 -28205349 - MIR SINE MIR -74 188 52 603 280 174 21 chr4 156084643 156084925 -28203737 - L2 LINE L2 -1 3312 2988 411 56 0 0 chr4 156085125 156085179 -28203483 + (TATG)n Simple_repeat Simple_repeat 3 56 0 2005 135 0 0 chr4 156085179 156085461 -28203201 - AluSx SINE Alu -30 282 1 294 222 0 0 chr4 156085664 156085709 -28202953 - AluJ/monomer SINE Alu -258 45 1 277 189 40 0 chr4 156085727 156085801 -28202861 + GA-rich Low_complexity Low_complexity 2 78 0 2302 77 0 3 chr4 156086260 156086547 -28202115 + AluSc SINE Alu 1 286 -23 1094 109 0 7 chr4 156086557 156086704 -28201958 + AluSg/x SINE Alu 122 267 -43 2238 104 24 0 chr4 156087011 156087309 -28201353 - AluSx SINE Alu -7 305 1 211 340 57 9 chr4 156087383 156087489 -28201173 + L2 LINE L2 3202 3312 -1 240 208 0 0 chr4 156088295 156088343 -28200319 - L1MC4 LINE L1 -6 8036 7989 1939 212 141 25 chr4 156088401 156088968 -28199694 - L1MC4 LINE L1 -166 7876 7244 1306 186 26 11 chr4 156088973 156089237 -28199425 - L1MC4 LINE L1 -956 7086 6819 375 104 52 52 chr4 156089238 156089314 -28199348 + MSTA LTR MaLR 58 133 -295 4552 53 17 45 chr4 156089314 156090389 -28198273 + MER11A LTR ERVK 1 1266 0 1417 125 94 81 chr4 156090389 156090448 -28198214 + MSTA LTR MaLR 128 185 -243 2108 135 0 19 chr4 156090448 156090766 -28197896 + AluSx SINE Alu 1 312 0 1417 125 94 81 chr4 156090766 156091003 -28197659 + MSTA LTR MaLR 185 428 0 448 250 0 10 chr4 156091003 156091099 -28197563 - L1MC4a LINE L1 -1071 6737 6643 371 175 0 82 chr4 156091102 156091176 -28197486 - L1MC4 LINE L1 -1456 6539 6479 2498 73 0 3 chr4 156091176 156091479 -28197183 - AluY SINE Alu -9 302 1 371 175 0 82 chr4 156091479 156091517 -28197145 - L1MC4 LINE L1 -1516 6479 6439 1911 166 73 13 chr4 156091882 156092280 -28196382 - L1MB7 LINE L1 -19 6663 6242 * 8592 205 60 28 chr4 156092272 156093163 -28195499 - L1MB7 LINE L1 -1210 5434 4573 1788 169 60 44 chr4 156093163 156093547 -28195115 + MLT1B LTR MaLR 1 390 0 8592 205 60 28 chr4 156093547 156093665 -28194997 - L1MB7 LINE L1 -2071 4573 4460 2141 133 0 7 chr4 156093665 156093973 -28194689 - AluSq SINE Alu -7 306 1 656 256 0 0 chr4 156093975 156094100 -28194562 - FLAM_A SINE Alu -8 125 1 8592 205 60 28 chr4 156094100 156094738 -28193924 - L1MB7 LINE L1 -2184 4460 3844 2144 123 42 33 chr4 156094738 156095072 -28193590 - MER1B DNA MER1_type 0 337 1 1718 181 129 6 chr4 156095072 156095395 -28193267 - MLT1A1 LTR MaLR 0 365 1 8592 205 60 28 chr4 156095395 156096050 -28192612 - L1MB7 LINE L1 -2799 3845 3052 1112 209 31 12 chr4 156096058 156096312 -28192350 + L1PA16 LINE L1 5906 6164 -2 929 202 47 142 chr4 156096312 156096742 -28191920 - L1MB7 LINE L1 -3584 3060 2672 373 176 5 48 chr4 156096745 156096883 -28191779 - AluJo SINE Alu -7 295 241 4896 103 166 142 chr4 156096883 156098362 -28190300 + pTR5 LTR ERV1 815 2438 0 1193 205 17 29 chr4 156098369 156098608 -28190054 - AluJo SINE Alu -75 237 2 3105 206 95 120 chr4 156098609 156099523 -28189139 - L1MB7 LINE L1 -3958 2688 1753 1587 167 19 4 chr4 156099523 156099786 -28188876 - AluJb SINE Alu -32 280 14 3105 206 95 120 chr4 156099786 156099799 -28188863 - L1MB7 LINE L1 -4893 1753 1741 1423 184 40 50 chr4 156099799 156100098 -28188564 - AluJo SINE Alu -16 296 1 3105 206 95 120 chr4 156100098 156100550 -28188112 - L1MB7 LINE L1 -4905 1741 1279 1924 138 3 27 chr4 156100550 156100848 -28187814 - AluSx SINE Alu -21 291 1 3105 206 95 120 chr4 156100848 156100875 -28187787 - L1MB7 LINE L1 -5367 1279 1253 1752 173 18 0 chr4 156100875 156101153 -28187509 - AluSx SINE Alu -28 284 2 3105 206 95 120 chr4 156101153 156101298 -28187364 - L1MB7 LINE L1 -5393 1253 1172 668 129 0 0 chr4 156101299 156101392 -28187270 + AluJ/FLAM SINE Alu 1 93 -219 1532 150 0 20 chr4 156101524 156101763 -28186899 + AluSx SINE Alu 50 285 -27 207 0 0 0 chr4 156101763 156101786 -28186876 + (CATA)n Simple_repeat Simple_repeat 4 26 0 1532 150 0 20 chr4 156101786 156101799 -28186863 + AluSx SINE Alu 285 297 -15 506 192 42 17 chr4 156101799 156101919 -28186743 - L1MB7 LINE L1 -5364 1178 1056 1267 206 6 155 chr4 156101952 156102316 -28186346 - L1MB7 LINE L1 -6127 415 135 1953 102 35 0 chr4 156102316 156102570 -28186092 - AluSx SINE Alu -33 279 17 1267 206 6 155 chr4 156102570 156102675 -28185987 - L1MB7 LINE L1 -6407 135 16 255 386 74 30 chr4 156102735 156103238 -28185424 + L2 LINE L2 1784 2308 -1006 265 294 261 22 chr4 156103263 156103443 -28185219 - MIR SINE MIR -16 246 24 * 366 257 71 57 chr4 156103442 156103470 -28185192 + MIR SINE MIR 121 147 -115 2002 120 3 7 chr4 156103470 156103775 -28184887 + AluSx SINE Alu 1 304 0 366 257 71 57 chr4 156103775 156103885 -28184777 + MIR SINE MIR 147 262 0 258 374 59 61 chr4 156103950 156104842 -28183820 + L2 LINE L2 2370 3260 -12 354 207 35 17 chr4 156108580 156108696 -28179966 - L1MC5 LINE L1 -51 7910 7793 393 229 191 30 chr4 156108711 156108942 -28179720 - L1MC5 LINE L1 -221 7740 7473 867 169 38 12 chr4 156108990 156109150 -28179512 + FRAM SINE Alu 1 164 -12 497 257 20 0 chr4 156109156 156109308 -28179354 - L1MC5 LINE L1 -518 7443 7289 2194 140 19 3 chr4 156109309 156109688 -28178974 - MLT1B LTR MaLR 0 390 6 1226 212 50 120 chr4 156109701 156110459 -28178203 - L1MC5 LINE L1 -678 7283 6625 1508 183 0 8 chr4 156110707 156110964 -28177698 + AluJo SINE Alu 40 294 -18 22 0 0 0 chr4 156111063 156111085 -28177577 + AT_rich Low_complexity Low_complexity 1 22 0 2208 116 0 25 chr4 156111780 156112100 -28176562 + AluSx SINE Alu 1 312 0 196 276 29 57 chr4 156112141 156112246 -28176416 + L2 LINE L2 3134 3235 -78 269 141 47 0 chr4 156112803 156112867 -28175795 + L1MB4 LINE L1 6108 6174 -6 2349 90 7 0 chr4 156113147 156113447 -28175215 - AluSc SINE Alu -7 302 1 344 326 191 14 chr4 156113701 156114213 -28174449 + L2 LINE L2 2063 2665 -649 1657 147 82 23 chr4 156115643 156115997 -28172665 + THE1C LTR MaLR 1 375 0 602 203 84 0 chr4 156116079 156116222 -28172440 + L2 LINE L2 3155 3309 -4 458 275 73 22 chr4 156116937 156117115 -28171547 + HAL1 LINE L1 1076 1262 -1245 329 275 83 9 chr4 156117226 156117335 -28171327 - HAL1 LINE L1 -19 2488 2372 1266 274 134 10 chr4 156117385 156117881 -28170781 - HAL1 LINE L1 -607 1900 1292 1631 157 35 48 chr4 156117881 156118193 -28170469 - AluJb SINE Alu 0 312 5 1266 274 134 10 chr4 156118193 156118392 -28170270 - HAL1 LINE L1 -1215 1292 1119 465 242 17 8 chr4 156118523 156118643 -28170019 - MER94 DNA DNA -13 121 1 786 270 85 0 chr4 156118643 156118854 -28169808 - MIR SINE MIR -14 248 20 252 241 0 19 chr4 156119004 156119058 -28169604 - MIR3 SINE MIR -152 56 4 182 341 68 11 chr4 156119754 156119842 -28168820 - L2 LINE L2 -8 3264 3172 2132 116 11 0 chr4 156119907 156120191 -28168471 + AluSx SINE Alu 1 287 -25 181 348 89 27 chr4 156120386 156120498 -28168164 + L2 LINE L2 3137 3255 -17 1883 145 26 0 chr4 156120498 156120808 -28167854 - MER7A DNA MER2_type -1 345 30 1857 114 130 3 chr4 156121535 156121850 -28166812 + THE1A LTR MaLR 1 355 0 11266 99 14 6 chr4 156121850 156123418 -28165244 + THE1A-int LTR MaLR 1 1580 0 2338 109 8 14 chr4 156123418 156123775 -28164887 + THE1A LTR MaLR 1 355 0 22 80 0 0 chr4 156124390 156124440 -28164222 + AT_rich Low_complexity Low_complexity 1 50 0 2089 141 0 3 chr4 156124695 156124999 -28163663 - AluSx SINE Alu -9 303 1 293 188 43 0 chr4 156125091 156125160 -28163502 - HsTC2 DNA Tc2 -1826 72 1 221 253 89 51 chr4 156125511 156125577 -28163085 + MER5B DNA MER1_type 2 73 -105 2154 123 3 0 chr4 156125577 156125877 -28162785 + AluSg SINE Alu 1 301 -9 221 253 89 51 chr4 156125877 156125889 -28162773 + MER5B DNA MER1_type 73 83 -95 230 301 75 0 chr4 156125916 156126009 -28162653 + MIR SINE MIR 79 178 -84 1257 126 0 0 chr4 156126214 156126389 -28162273 - AluSg/x SINE Alu -1 311 137 444 281 136 42 chr4 156126389 156126726 -28161936 + L2 LINE L2 2627 3006 -266 2054 127 14 0 chr4 156126726 156127018 -28161644 - AluSx SINE Alu -16 296 1 444 281 136 42 chr4 156127018 156127099 -28161563 + L2 LINE L2 3006 3078 -194 1363 177 37 34 chr4 156127291 156127585 -28161077 - AluJb SINE Alu -13 299 5 845 149 7 28 chr4 156127586 156127727 -28160935 - AluJb SINE Alu -174 138 1 365 318 62 8 chr4 156127763 156127892 -28160770 + L2 LINE L2 3134 3269 -3 196 177 129 177 chr4 156132487 156132576 -28156086 - MIR SINE MIR -29 233 141 1649 175 56 0 chr4 156132576 156132880 -28155782 - AluJo SINE Alu 0 319 1 2858 191 27 47 chr4 156132881 156133173 -28155489 + MLT1E3 LTR MaLR 5 301 -323 2098 78 22 0 chr4 156133173 156133441 -28155221 + AluY SINE Alu 1 274 -37 360 0 0 0 chr4 156133445 156133485 -28155177 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 2858 191 27 47 chr4 156133485 156133820 -28154842 + MLT1E3 LTR MaLR 304 624 0 196 177 129 177 chr4 156133820 156133851 -28154811 - MIR SINE MIR -120 142 116 1916 167 50 8 chr4 156133960 156134320 -28154342 - THE1C LTR MaLR 0 375 1 227 30 0 30 chr4 156134421 156134454 -28154208 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1991 140 10 0 chr4 156137330 156137622 -28151040 - AluSx SINE Alu -17 295 1 521 226 0 0 chr4 156137889 156137991 -28150671 + MIR SINE MIR 40 141 -121 26 74 0 0 chr4 156138320 156138374 -28150288 + AT_rich Low_complexity Low_complexity 1 54 0 2037 128 13 10 chr4 156139552 156139856 -28148806 + AluJo SINE Alu 1 305 -7 392 231 22 148 chr4 156140967 156141196 -28147466 - MIR SINE MIR -21 241 42 301 320 140 0 chr4 156141193 156141343 -28147319 - MIR SINE MIR -90 172 2 * 2197 112 0 0 chr4 156141373 156141667 -28146995 + AluSx SINE Alu 1 294 -18 220 294 0 24 chr4 156142683 156142768 -28145894 - MIR SINE MIR -2 260 178 300 304 155 7 chr4 156142806 156142954 -28145708 - MIR SINE MIR -75 187 18 1906 167 13 0 chr4 156143001 156143301 -28145361 + AluJo SINE Alu 1 304 -8 20047 100 11 9 chr4 156143607 156145954 -28142708 - L1PA7 LINE L1 -4 6465 4125 2348 103 10 0 chr4 156145954 156146254 -28142408 - AluSc SINE Alu -6 303 1 20047 100 11 9 chr4 156146254 156146897 -28141765 - L1PA7 LINE L1 -2344 4125 3485 2501 65 7 0 chr4 156146897 156147206 -28141456 - AluY SINE Alu 0 311 1 20047 100 11 9 chr4 156147206 156148181 -28140481 - L1PA7 LINE L1 -2984 3485 2498 3516 92 38 11 chr4 156148184 156148716 -28139946 - L1PA7 LINE L1 -5514 947 402 13567 120 21 40 chr4 156148721 156152088 -28136574 + L1PA7 LINE L1 4 3375 -3086 33105 35 7 0 chr4 156152088 156157100 -28131562 + L1PA3 LINE L1 1120 6168 0 15375 88 13 4 chr4 156157100 156160176 -28128486 + L1PA7 LINE L1 3364 6462 -7 981 191 0 18 chr4 156160203 156160371 -28128291 - FAM SINE Alu -10 165 1 21 0 0 0 chr4 156161149 156161170 -28127492 + AT_rich Low_complexity Low_complexity 1 21 0 1589 180 46 3 chr4 156161197 156161480 -28127182 - AluJo SINE Alu -15 297 3 345 268 45 25 chr4 156161566 156161723 -28126939 - MER103 DNA DNA -3 163 4 1240 196 28 99 chr4 156161853 156162246 -28126416 - MLT1A1 LTR MaLR 0 365 1 1562 161 11 32 chr4 156162406 156162691 -28125971 + AluJo SINE Alu 34 312 0 572 255 28 21 chr4 156162868 156163013 -28125649 - L2 LINE L2 0 3313 3168 310 258 91 53 chr4 156163020 156163152 -28125510 + L2 LINE L2 2603 2739 -575 243 336 88 32 chr4 156163426 156163551 -28125111 + L2 LINE L2 3141 3272 0 707 195 8 16 chr4 156164381 156164509 -28124153 - FLAM_C SINE Alu -4 129 3 2479 91 0 0 chr4 156164871 156165180 -28123482 + AluSc SINE Alu 1 309 0 825 300 107 14 chr4 156165812 156166252 -28122410 - MLT1L LTR MaLR -22 593 113 2100 124 28 0 chr4 156166526 156166817 -28121845 - AluSq SINE Alu -14 299 1 1730 169 0 14 chr4 156166961 156167251 -28121411 - AluJo SINE Alu -26 286 1 1252 206 98 16 chr4 156167278 156167593 -28121069 - MER58B DNA MER1_type 0 341 1 1771 121 51 60 chr4 156168183 156168498 -28120164 + AluJb SINE Alu 1 312 0 262 347 8 58 chr4 156169197 156169318 -28119344 + MIR SINE MIR 16 130 -78 391 188 20 10 chr4 156169323 156169424 -28119238 - L1MA10 LINE L1 0 6334 6233 848 129 54 38 chr4 156169426 156169612 -28119050 - MER53 DNA DNA 0 189 1 2693 175 71 31 chr4 156169663 156169777 -28118885 - L1ME1 LINE L1 -180 5986 5878 2141 112 30 3 chr4 156169777 156170081 -28118581 - AluSx SINE Alu 0 312 1 2693 175 71 31 chr4 156170081 156170654 -28118008 - L1ME1 LINE L1 -288 5878 5271 5414 121 43 20 chr4 156170657 156171711 -28116951 - L1PA14 LINE L1 -9 6152 5089 461 94 16 0 chr4 156171729 156171793 -28116869 - FLAM SINE Alu -16 127 63 952 179 40 18 chr4 156171812 156172036 -28116626 - L1ME1 LINE L1 -1051 5095 4867 365 208 0 50 chr4 156172036 156172061 -28116601 - MER112 DNA MER1_type -164 96 71 267 31 0 0 chr4 156172061 156172093 -28116569 + (CA)n Simple_repeat Simple_repeat 1 32 0 365 208 0 50 chr4 156172093 156172168 -28116494 - MER112 DNA MER1_type -189 71 1 310 290 68 68 chr4 156172594 156172770 -28115892 + MIR SINE MIR 86 261 -1 1281 167 9 18 chr4 156173301 156173528 -28115134 - AluJb SINE Alu 0 312 88 2172 112 0 0 chr4 156173584 156173869 -28114793 - AluSx SINE Alu -11 301 17 187 393 92 6 chr4 156175103 156175266 -28113396 + MIR3 SINE MIR 30 206 -2 234 0 0 0 chr4 156175959 156175985 -28112677 + (A)n Simple_repeat Simple_repeat 1 26 0 2168 92 4 0 chr4 156176095 156176368 -28112294 + AluSp SINE Alu 1 274 -39 309 26 0 0 chr4 156176369 156176407 -28112255 + (TC)n Simple_repeat Simple_repeat 1 38 0 1725 144 63 0 chr4 156176512 156176797 -28111865 + AluJb SINE Alu 1 303 -9 29 0 0 0 chr4 156176893 156176922 -28111740 + AT_rich Low_complexity Low_complexity 1 29 0 842 204 0 33 chr4 156176990 156177120 -28111542 + FRAM SINE Alu 14 140 -172 4134 108 18 8 chr4 156177120 156177749 -28110913 + MER41B LTR ERV1 1 635 0 842 204 0 33 chr4 156177749 156177770 -28110892 + FRAM SINE Alu 140 160 -16 480 288 74 18 chr4 156177887 156178050 -28110612 + MIR SINE MIR 79 250 -12 2204 96 3 0 chr4 156178399 156178690 -28109972 + AluSq SINE Alu 1 292 -21 3375 134 41 4 chr4 156178719 156179227 -28109435 - MER1A DNA MER1_type 0 527 1 230 185 15 92 chr4 156179536 156179601 -28109061 - MIR SINE MIR -97 111 52 5612 76 9 4 chr4 156180253 156181618 -28107044 - L1PA10 LINE L1 -16 6152 4722 604 198 0 0 chr4 156182762 156182868 -28105794 + FLAM_C SINE Alu 3 108 -35 254 268 0 0 chr4 156183110 156183166 -28105496 - MLT1J LTR MaLR -345 166 111 244 293 13 0 chr4 156183166 156183185 -28105477 - LTR67 LTR ERVL -386 171 96 2044 143 13 0 chr4 156183756 156184056 -28104606 - AluSx SINE Alu -8 304 1 1955 138 6 25 chr4 156184571 156184889 -28103773 - AluSx SINE Alu 0 312 1 3044 137 64 98 chr4 156185003 156185089 -28103573 + Tigger2 DNA MER2_type 1 88 -2630 1594 181 3 24 chr4 156185089 156185387 -28103275 - AluJo SINE Alu -2 310 19 3044 137 64 98 chr4 156185387 156185485 -28103177 + Tigger2 DNA MER2_type 88 188 -2530 2264 77 0 32 chr4 156185485 156185798 -28102864 + AluSg SINE Alu 1 303 -7 3044 137 64 98 chr4 156185798 156185935 -28102727 + Tigger2 DNA MER2_type 188 328 -2390 2293 109 0 0 chr4 156185935 156186228 -28102434 + AluSg SINE Alu 1 293 -17 3044 137 64 98 chr4 156186228 156186698 -28101964 + Tigger2 DNA MER2_type 328 767 -1951 23 33 0 0 chr4 156186698 156186728 -28101934 + AT_rich Low_complexity Low_complexity 1 30 0 1206 134 95 0 chr4 156186745 156186977 -28101685 + Tigger2 DNA MER2_type 2461 2714 -4 2240 66 70 0 chr4 156187268 156187554 -28101108 - AluY SINE Alu -5 306 1 1963 131 3 0 chr4 156187597 156187888 -28100774 - AluSq SINE Alu -18 295 4 490 141 0 0 chr4 156187988 156188066 -28100596 + AluSg/x SINE Alu 216 293 -16 2281 98 0 0 chr4 156188990 156189286 -28099376 + AluY SINE Alu 1 296 -15 2306 110 0 0 chr4 156190530 156190840 -28097822 - AluSq SINE Alu -3 310 1 246 273 184 31 chr4 156191760 156191924 -28096738 + MIR SINE MIR 20 212 -50 192 303 121 30 chr4 156192725 156192824 -28095838 - MER5A DNA MER1_type -1 188 81 239 161 65 0 chr4 156192827 156192889 -28095773 + MER2 DNA MER2_type 141 206 -139 2060 48 0 22 chr4 156193006 156193275 -28095387 + L1PA6 LINE L1 5879 6141 -13 699 290 42 13 chr4 156193551 156193789 -28094873 + MLT1E LTR MaLR 349 593 0 576 238 38 0 chr4 156193795 156193980 -28094682 + L1M4 LINE L1 2841 3032 -3114 22 0 0 0 chr4 156195244 156195266 -28093396 + AT_rich Low_complexity Low_complexity 1 22 0 480 223 62 0 chr4 156195632 156195744 -28092918 - MIR3 SINE MIR -3 205 87 723 160 32 90 chr4 156196352 156196540 -28092122 + MER5B DNA MER1_type 1 177 -1 1559 55 15 10 chr4 156196856 156197056 -28091606 + AluY SINE Alu 1 201 -110 3031 198 24 9 chr4 156198024 156198661 -28090001 - MER82 DNA MER2_type -6 647 2 2158 123 3 0 chr4 156199268 156199576 -28089086 + AluSg1 SINE Alu 1 309 0 256 275 67 17 chr4 156199752 156199872 -28088790 - MER103 DNA DNA -9 157 32 426 266 114 27 chr4 156200891 156201075 -28087587 - MIR SINE MIR -12 250 51 222 170 94 0 chr4 156201326 156201379 -28087283 + MIR SINE MIR 65 122 -140 344 293 124 49 chr4 156201389 156201614 -28087048 - L1ME LINE L1 -624 5497 5256 662 146 8 31 chr4 156201727 156201857 -28086805 + FLAM_C SINE Alu 1 127 -16 511 263 50 99 chr4 156202089 156202351 -28086311 + MIR SINE MIR 2 250 -12 183 80 0 0 chr4 156202445 156202470 -28086192 + (A)n Simple_repeat Simple_repeat 1 25 0 421 241 84 0 chr4 156203116 156203280 -28085382 + MER33 DNA MER1_type 1 175 -97 457 185 115 8 chr4 156203411 156203541 -28085121 + MER33 DNA MER1_type 177 320 -4 1888 159 27 3 chr4 156203644 156203945 -28084717 + AluJb SINE Alu 1 308 -4 758 158 0 0 chr4 156204890 156205023 -28083639 + AluSp/q SINE Alu 181 313 0 1180 190 71 26 chr4 156205095 156205322 -28083340 + MER33 DNA MER1_type 1 247 -2338 2042 141 3 0 chr4 156205322 156205612 -28083050 - AluSx SINE Alu -21 291 1 1180 190 71 26 chr4 156205612 156205694 -28082968 + MER33 DNA MER1_type 247 324 0 768 156 8 0 chr4 156207505 156207627 -28081035 + FLAM_A SINE Alu 2 124 -9 322 216 93 79 chr4 156207762 156207839 -28080823 + MIR SINE MIR 114 195 -67 2302 96 14 0 chr4 156207839 156208131 -28080531 + AluSx SINE Alu 1 296 -16 322 216 93 79 chr4 156208131 156208192 -28080470 + MIR SINE MIR 195 254 -8 669 263 47 0 chr4 156208547 156208718 -28079944 + MER63A DNA MER1_type 31 209 -1 885 223 27 0 chr4 156208781 156208965 -28079697 + MER5A DNA MER1_type 1 189 0 1662 177 3 69 chr4 156209237 156209571 -28079091 + AluJb SINE Alu 1 312 0 1346 323 156 9 chr4 156209808 156210607 -28078055 - L3 LINE CR1 -33 1544 628 2225 96 0 10 chr4 156211017 156211319 -28077343 + AluSp SINE Alu 1 299 -14 1970 136 20 14 chr4 156211329 156211623 -28077039 + AluSx SINE Alu 4 299 -13 24 53 0 0 chr4 156211649 156211687 -28076975 + AT_rich Low_complexity Low_complexity 1 38 0 640 154 10 19 chr4 156211697 156211801 -28076861 + FLAM_A SINE Alu 24 126 -16 1924 137 10 7 chr4 156212131 156212423 -28076239 - AluJb SINE Alu -19 293 1 3355 159 67 3 chr4 156212659 156212903 -28075759 + L1MB3 LINE L1 5515 5742 -441 1313 209 58 66 chr4 156212903 156213296 -28075366 - MLT1B LTR MaLR 0 390 1 3355 159 67 3 chr4 156213296 156213662 -28075000 + L1MB3 LINE L1 5742 6164 -19 2159 111 0 0 chr4 156213725 156214013 -28074649 + AluSg SINE Alu 1 288 -22 625 0 0 0 chr4 156214066 156214137 -28074525 - L1PA2 LINE L1 -3 6152 6082 1568 110 50 0 chr4 156214270 156214489 -28074173 + MER30 DNA MER1_type 1 230 0 277 86 0 0 chr4 156215247 156215282 -28073380 + U2 snRNA snRNA 1 35 -153 300 70 0 0 chr4 156216891 156216934 -28071728 + (CA)n Simple_repeat Simple_repeat 2 44 0 766 138 9 26 chr4 156217001 156217117 -28071545 - FRAM SINE Alu -20 156 43 1308 237 57 33 chr4 156217559 156217981 -28070681 - MLT2F LTR ERVL -231 432 1 2166 72 0 0 chr4 156218361 156218626 -28070036 + AluY SINE Alu 1 265 -46 389 237 13 0 chr4 156219190 156219266 -28069396 - MER81 DNA DNA -37 77 1 1303 115 11 0 chr4 156219505 156219687 -28068975 + AluSg/x SINE Alu 112 295 -15 2417 52 0 0 chr4 156220296 156220613 -28068049 - AluY SINE Alu 0 311 1 22 35 0 0 chr4 156221914 156221943 -28066719 + AT_rich Low_complexity Low_complexity 1 29 0 210 315 136 43 chr4 156222061 156222223 -28066439 + MER5A DNA MER1_type 3 179 -10 2232 90 0 0 chr4 156222302 156222638 -28066024 + AluSc SINE Alu 1 336 0 1492 176 119 0 chr4 156222654 156223049 -28065613 + MLT2B1 LTR ERVL 16 511 -9 710 203 117 6 chr4 156224483 156224646 -28064016 - MIR SINE MIR -24 238 58 454 185 202 28 chr4 156224658 156224742 -28063920 + MER5A DNA MER1_type 4 72 -117 1981 129 0 0 chr4 156224742 156225013 -28063649 - AluSx SINE Alu -37 275 5 454 185 202 28 chr4 156225013 156225082 -28063580 + MER5A DNA MER1_type 72 188 -1 24 32 0 0 chr4 156225266 156225297 -28063365 + AT_rich Low_complexity Low_complexity 1 31 0 217 316 114 0 chr4 156225434 156225513 -28063149 + L2 LINE L2 3202 3289 -24 26 0 0 0 chr4 156226274 156226300 -28062362 + AT_rich Low_complexity Low_complexity 1 26 0 222 160 0 0 chr4 156226406 156226456 -28062206 + (TA)n Simple_repeat Simple_repeat 1 50 0 337 226 10 26 chr4 156227663 156227767 -28060895 + MIR3 SINE MIR 73 177 -31 1774 179 3 3 chr4 156227887 156228183 -28060479 - AluJo SINE Alu -16 296 1 2173 113 3 0 chr4 156228369 156228662 -28060000 + AluSx SINE Alu 4 297 -15 428 240 82 56 chr4 156228819 156229015 -28059647 + L1ME3 LINE L1 5961 6161 -1 21 36 0 0 chr4 156229620 156229648 -28059014 + AT_rich Low_complexity Low_complexity 1 28 0 2099 131 3 3 chr4 156229683 156229980 -28058682 + AluJb SINE Alu 1 297 -15 1955 138 3 3 chr4 156230016 156230349 -28058313 - AluSx SINE Alu 0 333 1 760 291 87 28 chr4 156230840 156231382 -28057280 + L1MC5 LINE L1 7302 7875 -86 2134 107 10 3 chr4 156231492 156231783 -28056879 + AluSx SINE Alu 1 293 -19 391 206 10 31 chr4 156232128 156232225 -28056437 - MLT1K LTR MaLR -1 587 493 368 198 10 10 chr4 156232236 156232332 -28056330 + L1MC3 LINE L1 4978 5073 -1073 4398 201 36 6 chr4 156232354 156233233 -28055429 + L1MC3 LINE L1 5470 6375 -1410 1623 144 39 62 chr4 156233418 156233724 -28054938 + AluSx SINE Alu 14 312 0 2240 106 3 13 chr4 156234161 156234473 -28054189 + AluSx SINE Alu 1 309 -3 190 380 28 35 chr4 156235171 156235313 -28053349 + L2 LINE L2 2825 2965 -307 620 272 38 30 chr4 156235797 156236118 -28052544 + LTR16A LTR ERVL 1 374 -76 1754 164 32 11 chr4 156237049 156237330 -28051332 + AluJo SINE Alu 1 287 -25 387 0 0 0 chr4 156237338 156237381 -28051281 + (CA)n Simple_repeat Simple_repeat 2 44 0 1976 261 84 13 chr4 156237384 156237518 -28051144 - L1MC4a LINE L1 -1849 5959 5836 303 28 0 0 chr4 156237518 156237554 -28051108 + (TC)n Simple_repeat Simple_repeat 1 36 0 1976 261 84 13 chr4 156237554 156238039 -28050623 - L1MC4a LINE L1 -1972 5836 5296 248 290 33 114 chr4 156238233 156238478 -28050184 - L2 LINE L2 -218 3054 2830 1212 187 161 11 chr4 156238524 156238791 -28049871 - AluSx SINE Alu -5 307 1 246 314 81 12 chr4 156238793 156238965 -28049697 - L2 LINE L2 -567 2747 2564 201 147 0 0 chr4 156239695 156239729 -28048933 + (TATG)n Simple_repeat Simple_repeat 3 36 0 2303 92 0 0 chr4 156239729 156240023 -28048639 - AluY SINE Alu -17 294 1 1668 170 58 0 chr4 156240027 156240304 -28048358 - AluJo SINE Alu -19 293 1 356 269 143 0 chr4 156240426 156240545 -28048117 + MIR SINE MIR 121 256 -6 216 371 0 84 chr4 156240974 156241187 -28047475 - MIR3 SINE MIR -3 205 11 297 295 62 9 chr4 156241321 156241433 -28047229 - MIR SINE MIR -6 256 139 2036 149 0 3 chr4 156242207 156242516 -28046146 - AluSx SINE Alu -4 308 1 2495 65 0 3 chr4 156242889 156243195 -28045467 - AluY SINE Alu -2 309 5 1157 118 41 0 chr4 156243781 156243950 -28044712 + AluSg/x SINE Alu 134 309 -1 2215 128 3 0 chr4 156244362 156244666 -28043996 + AluSx SINE Alu 1 305 -7 1711 223 77 37 chr4 156245209 156245520 -28043142 - MLT1F1 LTR MaLR -1 566 223 1772 137 76 0 chr4 156245520 156245797 -28042865 + AluJb SINE Alu 1 298 -14 1711 223 77 37 chr4 156245797 156245995 -28042667 - MLT1F1 LTR MaLR -344 223 34 2111 142 0 0 chr4 156246114 156246425 -28042237 - AluSx SINE Alu -1 311 1 23 33 0 0 chr4 156246743 156246773 -28041889 + AT_rich Low_complexity Low_complexity 1 30 0 763 148 31 8 chr4 156248284 156248412 -28040250 - FLAM_A SINE Alu -2 140 10 23 0 0 0 chr4 156248421 156248444 -28040218 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr4 156248580 156248604 -28040058 + AT_rich Low_complexity Low_complexity 1 24 0 970 138 96 11 chr4 156249007 156249195 -28039467 - L1MA4 LINE L1 -6 6294 6091 21 0 0 0 chr4 156249755 156249776 -28038886 + AT_rich Low_complexity Low_complexity 1 21 0 1672 169 26 26 chr4 156250073 156250375 -28038287 + AluJo SINE Alu 1 302 -10 2241 97 0 10 chr4 156250379 156250679 -28037983 + AluSc SINE Alu 1 297 -12 344 301 169 27 chr4 156251708 156251891 -28036771 + Charlie8 DNA MER1_type 1 209 -2208 223 26 0 53 chr4 156251924 156251962 -28036700 + (CAA)n Simple_repeat Simple_repeat 2 37 0 2207 94 0 7 chr4 156252163 156252488 -28036174 - AluSq SINE Alu 0 323 1 2843 0 0 0 chr4 156252508 156252808 -28035854 - AluYa5 SINE Alu -11 300 1 277 189 40 0 chr4 156253267 156253341 -28035321 + CT-rich Low_complexity Low_complexity 2 78 0 805 176 32 0 chr4 156253359 156253484 -28035178 + FLAM_C SINE Alu 1 129 -4 1527 177 3 81 chr4 156253535 156253845 -28034817 - AluJo SINE Alu -14 288 3 1833 157 0 29 chr4 156254973 156255313 -28033349 + AluJb SINE Alu 1 312 0 22 0 0 0 chr4 156255959 156255981 -28032681 + AT_rich Low_complexity Low_complexity 1 22 0 306 226 220 9 chr4 156256424 156256592 -28032070 - MIR SINE MIR -43 219 13 257 260 94 0 chr4 156257046 156257142 -28031520 + L1ME LINE L1 5517 5621 -500 21 36 0 0 chr4 156257240 156257268 -28031394 + AT_rich Low_complexity Low_complexity 1 28 0 1747 154 20 3 chr4 156257420 156257712 -28030950 - AluJb SINE Alu -15 297 1 265 360 130 0 chr4 156258096 156258196 -28030466 + L3b LINE CR1 1469 1581 -2 1730 171 14 0 chr4 156258937 156259223 -28029439 - AluJo SINE Alu -20 292 3 1843 181 0 0 chr4 156260355 156260647 -28028015 + AluJb SINE Alu 1 292 -20 255 61 0 0 chr4 156260647 156260680 -28027982 + (TA)n Simple_repeat Simple_repeat 2 34 0 2198 108 0 16 chr4 156261078 156261383 -28027279 + AluSx SINE Alu 1 300 -12 1581 168 29 15 chr4 156262232 156262250 -28026412 - AluJb SINE Alu -21 291 275 243 0 0 0 chr4 156262250 156262277 -28026385 + (TC)n Simple_repeat Simple_repeat 2 28 0 1581 168 29 15 chr4 156262277 156262532 -28026130 - AluJb SINE Alu -37 275 14 1898 138 32 0 chr4 156262829 156263141 -28025521 + AluJb SINE Alu 1 312 0 1073 122 0 0 chr4 156263614 156263791 -28024871 + AluSg/x SINE Alu 132 308 0 35 0 0 0 chr4 156263816 156263851 -28024811 + AT_rich Low_complexity Low_complexity 1 35 0 721 90 110 0 chr4 156263851 156263951 -28024711 - HY1 scRNA scRNA -1 111 1 22 94 0 0 chr4 156264255 156264319 -28024343 + AT_rich Low_complexity Low_complexity 1 64 0 1360 160 0 0 chr4 156264988 156265194 -28023468 + AluJb SINE Alu 1 206 -106 419 227 146 18 chr4 156265406 156265516 -28023146 - MIR SINE MIR -111 151 28 643 318 107 23 chr4 156265704 156266050 -28022612 + L1MEd LINE L1 1 375 -5744 355 177 16 40 chr4 156266050 156266174 -28022488 + (TA)n Simple_repeat Simple_repeat 2 122 0 368 327 29 0 chr4 156266232 156266336 -28022326 + L1MEd LINE L1 413 519 -5600 740 258 39 0 chr4 156266336 156266514 -28022148 - MER58A DNA MER1_type 0 224 40 250 215 0 92 chr4 156266521 156266586 -28022076 + L1MEd LINE L1 512 570 -5549 591 287 59 95 chr4 156266603 156266831 -28021831 + L1MEd LINE L1 705 940 -5179 1734 91 151 0 chr4 156266831 156267083 -28021579 - AluSx SINE Alu -22 290 1 591 287 59 95 chr4 156267083 156267154 -28021508 + L1MEd LINE L1 940 1012 -5107 7822 35 1 1 chr4 156267154 156268259 -28020403 + L1PA4 LINE L1 5084 6188 0 591 287 59 95 chr4 156268259 156268378 -28020284 + L1MEd LINE L1 1012 1110 -5009 2299 109 0 0 chr4 156268573 156268875 -28019787 + AluSx SINE Alu 1 302 -10 1202 147 22 65 chr4 156268980 156269211 -28019451 - AluJb SINE Alu -8 304 84 1781 168 3 3 chr4 156271592 156271884 -28016778 + AluJb SINE Alu 12 303 -9 1657 171 3 24 chr4 156271999 156272286 -28016376 - AluJb SINE Alu -6 306 26 2126 138 0 0 chr4 156272691 156273002 -28015660 - AluJb SINE Alu -1 311 1 2124 125 0 10 chr4 156273268 156273572 -28015090 + AluSx SINE Alu 1 301 -11 763 283 57 34 chr4 156274347 156274767 -28013895 - LTR33 LTR ERVL 0 521 3 357 296 126 13 chr4 156275612 156275771 -28012891 - MIR SINE MIR -39 223 47 1027 204 0 0 chr4 156276206 156276382 -28012280 - FRAM SINE Alu 0 176 1 2123 119 10 0 chr4 156276392 156276685 -28011977 - AluSq SINE Alu -17 296 1 2275 89 3 20 chr4 156276693 156276995 -28011667 - AluSp SINE Alu -16 297 1 210 288 0 17 chr4 156277808 156277867 -28010795 + L2 LINE L2 3256 3313 0 2215 130 0 0 chr4 156278385 156278684 -28009978 + AluSx SINE Alu 1 299 -13 2148 160 14 22 chr4 156278717 156279085 -28009577 + MLT1A1 LTR MaLR 1 365 0 243 0 0 0 chr4 156279754 156279781 -28008881 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1418 174 19 26 chr4 156279787 156280051 -28008611 - AluJo SINE Alu -37 275 14 180 0 0 0 chr4 156280277 156280297 -28008365 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2107 81 0 0 chr4 156280304 156280562 -28008100 - AluY SINE Alu -51 260 3 2302 116 0 3 chr4 156280570 156280880 -28007782 - AluSx SINE Alu -3 309 1 279 258 56 81 chr4 156280885 156280950 -28007712 - L1ME LINE L1 -237 5884 5819 1675 161 16 29 chr4 156280950 156281266 -28007396 + AluJo SINE Alu 1 312 0 279 258 56 81 chr4 156281266 156281398 -28007264 - L1ME LINE L1 -302 5819 5692 1910 135 0 47 chr4 156281579 156281903 -28006759 + AluSx SINE Alu 1 310 0 438 20 0 0 chr4 156281994 156282045 -28006617 + (TG)n Simple_repeat Simple_repeat 2 52 0 670 158 100 33 chr4 156282352 156282472 -28006190 + FLAM_C SINE Alu 2 129 -14 2171 86 3 30 chr4 156282671 156282972 -28005690 + AluSp SINE Alu 1 293 -20 1890 138 3 30 chr4 156283510 156283815 -28004847 + AluSx SINE Alu 1 297 -15 1961 116 45 27 chr4 156284480 156284772 -28003890 - AluSx SINE Alu -15 297 1 252 292 42 25 chr4 156284868 156284988 -28003674 + L1MC4 LINE L1 7790 7911 -131 297 0 0 0 chr4 156284988 156285021 -28003641 + (CA)n Simple_repeat Simple_repeat 2 34 0 279 139 47 23 chr4 156285021 156285107 -28003555 + (CAGAGA)n Simple_repeat Simple_repeat 3 90 0 1709 166 3 39 chr4 156285240 156285548 -28003114 - AluJb SINE Alu -15 297 1 329 293 100 21 chr4 156285801 156285941 -28002721 - L2 LINE L2 -5 3267 3117 233 211 18 18 chr4 156286051 156286108 -28002554 + (TAA)n Simple_repeat Simple_repeat 3 59 0 686 213 16 0 chr4 156286531 156286658 -28002004 + FLAM_A SINE Alu 13 141 -1 255 285 54 46 chr4 156286843 156286973 -28001689 - L2 LINE L2 -497 2817 2687 989 144 0 0 chr4 156287195 156287334 -28001328 + AluJb SINE Alu 144 282 -30 230 51 51 0 chr4 156287337 156287376 -28001286 + A-rich Low_complexity Low_complexity 2 42 0 351 308 154 12 chr4 156287492 156287732 -28000930 - L2 LINE L2 -703 2611 2338 2200 230 37 6 chr4 156287732 156287989 -28000673 - L1M4 LINE L1 -1201 4945 4698 1036 123 68 0 chr4 156287989 156288151 -28000511 + L1PA16 LINE L1 5994 6166 0 2200 230 37 6 chr4 156288151 156288428 -28000234 - L1M4 LINE L1 -1448 4698 4394 421 268 65 14 chr4 156288757 156288895 -27999767 + MIR SINE MIR 113 257 -5 1783 153 3 33 chr4 156289109 156289416 -27999246 + AluJb SINE Alu 1 298 -14 1303 145 68 0 chr4 156289486 156289721 -27998941 - L1MA4 LINE L1 -11 6289 6039 780 187 12 76 chr4 156289760 156289931 -27998731 - AluSg/x SINE Alu -11 298 139 227 195 0 46 chr4 156289960 156290047 -27998615 + (TTAA)n Simple_repeat Simple_repeat 1 83 0 879 157 0 7 chr4 156290056 156290196 -27998466 - AluJb SINE Alu -173 139 1 268 108 0 38 chr4 156290196 156290254 -27998408 - L1MA4A LINE L1 -249 6054 5995 6641 100 12 3 chr4 156290949 156292498 -27996164 + L1PA10 LINE L1 4607 6168 0 21 36 0 0 chr4 156292815 156292843 -27995819 + AT_rich Low_complexity Low_complexity 1 28 0 442 115 16 0 chr4 156293121 156293182 -27995480 - AluS SINE Alu -247 63 2 216 235 0 0 chr4 156293193 156293244 -27995418 - MIR SINE MIR -108 154 104 2276 104 0 13 chr4 156293452 156293769 -27994893 - AluSq SINE Alu 0 313 1 1528 145 46 56 chr4 156293829 156294000 -27994662 - AluSx SINE Alu -12 300 132 2841 19 0 6 chr4 156294000 156294319 -27994343 - AluYb8 SINE Alu -1 317 1 1528 145 46 56 chr4 156294319 156294450 -27994212 - AluSx SINE Alu -180 132 1 308 287 28 28 chr4 156294460 156294568 -27994094 - MIR SINE MIR -108 154 47 2412 70 3 0 chr4 156294973 156295274 -27993388 + AluY SINE Alu 1 302 -9 2447 68 0 7 chr4 156295596 156295920 -27992742 + AluSc SINE Alu 1 309 0 28 0 0 0 chr4 156296949 156296977 -27991685 + AT_rich Low_complexity Low_complexity 1 28 0 387 293 0 20 chr4 156297640 156297739 -27990923 + L2 LINE L2 3166 3262 -10 330 298 21 96 chr4 156298666 156298750 -27989912 + MER115 DNA AcHobo 292 356 -337 2084 117 0 24 chr4 156298750 156299048 -27989614 - AluSg SINE Alu -13 297 7 330 298 21 96 chr4 156299048 156299151 -27989511 + MER115 DNA AcHobo 356 465 -228 226 326 22 0 chr4 156299177 156299266 -27989396 + MER115 DNA AcHobo 601 691 -2 227 271 42 31 chr4 156299268 156299364 -27989298 + MIR SINE MIR 87 183 -79 341 244 56 75 chr4 156299378 156299477 -27989185 - MIR SINE MIR -4 258 162 1671 162 0 26 chr4 156299477 156299780 -27988882 - AluJo SINE Alu -17 295 1 341 244 56 75 chr4 156299780 156299840 -27988822 - MIR SINE MIR -100 162 102 395 222 59 59 chr4 156299936 156300071 -27988591 - L2 LINE L2 -18 3295 3161 509 192 48 0 chr4 156300125 156300229 -27988433 + Tigger5 DNA MER2_type 2215 2323 0 1751 239 122 21 chr4 156300418 156301032 -27987630 - L2 LINE L2 -338 2976 2301 27 87 0 0 chr4 156302341 156302410 -27986252 + GC_rich Low_complexity Low_complexity 1 69 0 207 146 0 0 chr4 156302526 156302567 -27986095 + (GGA)n Simple_repeat Simple_repeat 1 41 0 329 273 120 104 chr4 156302744 156303128 -27985534 - L1M2 LINE L1 -5716 1133 744 228 67 0 0 chr4 156303291 156303321 -27985341 + (GGA)n Simple_repeat Simple_repeat 2 31 0 44 35 0 0 chr4 156303409 156303467 -27985195 + GC_rich Low_complexity Low_complexity 1 58 0 21 0 0 0 chr4 156303481 156303502 -27985160 + GC_rich Low_complexity Low_complexity 1 21 0 570 15 0 0 chr4 156303917 156303984 -27984678 + (GA)n Simple_repeat Simple_repeat 1 67 0 258 81 0 0 chr4 156303983 156304020 -27984642 + (TG)n Simple_repeat Simple_repeat 1 37 0 * 21 71 0 0 chr4 156305814 156305856 -27982806 + AT_rich Low_complexity Low_complexity 1 42 0 222 37 0 0 chr4 156307812 156307839 -27980823 + (T)n Simple_repeat Simple_repeat 1 27 0 1278 189 104 8 chr4 156308191 156308451 -27980211 - AluJo SINE Alu -27 285 1 825 138 0 31 chr4 156308641 156308771 -27979891 + FLAM_C SINE Alu 1 126 -7 202 195 268 0 chr4 156308878 156308960 -27979702 + MIR SINE MIR 121 224 -38 2050 105 42 7 chr4 156309738 156310023 -27978639 + AluSq SINE Alu 1 295 -18 1667 169 67 6 chr4 156311199 156311530 -27977132 - L1MD1 LINE L1 -8 6234 5884 2991 195 47 47 chr4 156311920 156312684 -27975978 + L1MC4a LINE L1 6873 7636 -172 298 211 89 32 chr4 156312684 156312807 -27975855 + L1MD3 LINE L1 7856 7985 -10 1073 155 0 6 chr4 156312891 156313059 -27975603 + AluSx SINE Alu 1 167 -145 30 45 0 0 chr4 156314016 156314060 -27974602 + AT_rich Low_complexity Low_complexity 1 44 0 2945 212 44 43 chr4 156314540 156314584 -27974078 - L1ME1 LINE L1 -1 7994 7952 1898 84 16 96 chr4 156314584 156314770 -27973892 - AluSq SINE Alu -6 297 146 2383 47 0 0 chr4 156314770 156315047 -27973615 - AluY SINE Alu -34 277 1 1898 84 16 96 chr4 156315047 156315182 -27973480 - AluSq SINE Alu -157 146 2 2945 212 44 43 chr4 156315182 156315869 -27972793 - L1ME1 LINE L1 -43 7952 7267 2279 143 56 45 chr4 156315869 156316205 -27972457 - L1MB8 LINE L1 -6 6172 5828 2053 141 0 10 chr4 156316205 156316510 -27972152 - AluJb SINE Alu -10 302 1 2279 143 56 45 chr4 156316510 156316657 -27972005 - L1MB8 LINE L1 -350 5828 5684 2945 212 44 43 chr4 156316657 156316761 -27971901 - L1ME1 LINE L1 -728 7267 7165 2300 106 3 0 chr4 156316761 156317063 -27971599 - AluSq SINE Alu -10 303 1 2945 212 44 43 chr4 156317063 156317311 -27971351 - L1ME1 LINE L1 -830 7165 5310 347 222 65 107 chr4 156317454 156317715 -27970947 - L2 LINE L2 -815 2499 2250 1259 190 53 115 chr4 156318315 156318731 -27969931 - MLT1B LTR MaLR 0 390 1 200 264 118 73 chr4 156320273 156320383 -27968279 - L2 LINE L2 -14 3258 3144 1656 130 126 0 chr4 156322015 156322276 -27966386 - AluSx SINE Alu -18 294 1 950 274 61 70 chr4 156322529 156323004 -27965658 - L1MC4a LINE L1 -1974 5834 5364 25 102 0 0 chr4 156323759 156323847 -27964815 + AT_rich Low_complexity Low_complexity 1 88 0 279 288 0 0 chr4 156323927 156323993 -27964669 - MIR SINE MIR -3 259 194 773 224 46 0 chr4 156324268 156324420 -27964242 + FAM SINE Alu 1 159 -16 887 57 16 0 chr4 156425215 156425339 -27863323 + HERVL-A2 LTR ERVL 5529 5654 0 2908 99 71 0 chr4 156425339 156425762 -27862900 + MLT2A2 LTR ERVL 1 453 0 2031 147 7 0 chr4 156425945 156426252 -27862410 - AluY SINE Alu -2 309 1 7694 23 3 0 chr4 156426541 156427663 -27860999 - L1PA3 LINE L1 -3 6152 5030 690 64 58 12 chr4 156427778 156427949 -27860713 + (TA)n Simple_repeat Simple_repeat 2 180 0 888 316 123 63 chr4 156428017 156429201 -27859461 + L2 LINE L2 1560 2814 -500 2256 119 0 0 chr4 156429234 156429544 -27859118 - AluSg SINE Alu 0 310 1 255 270 99 57 chr4 156429572 156429783 -27858879 + L2 LINE L2 3084 3303 -10 575 265 12 29 chr4 156430435 156430605 -27858057 - MER97a DNA MER1_type? -715 179 13 216 193 35 69 chr4 156430867 156431012 -27857650 + (TTATA)n Simple_repeat Simple_repeat 5 144 0 * 231 178 47 59 chr4 156430908 156431077 -27857585 + (TA)n Simple_repeat Simple_repeat 2 168 0 * 273 220 35 46 chr4 156431026 156431199 -27857463 + (TTATA)n Simple_repeat Simple_repeat 5 175 0 247 226 39 50 chr4 156431120 156431301 -27857361 + (CATAT)n Simple_repeat Simple_repeat 2 180 0 * 396 249 72 22 chr4 156431309 156431490 -27857172 - L1MC4a LINE L1 -1897 5911 5722 * 6852 14 4 0 chr4 156431486 156432273 -27856389 - L1PA2 LINE L1 -4 6151 5362 254 228 130 32 chr4 156432284 156432407 -27856255 - L1MC4a LINE L1 -2090 5718 5584 28 0 0 0 chr4 156432674 156432702 -27855960 + AT_rich Low_complexity Low_complexity 1 28 0 221 341 0 34 chr4 156432724 156432812 -27855850 - MER5B DNA MER1_type 0 178 94 1987 114 0 31 chr4 156434728 156435048 -27853614 - AluSx SINE Alu 0 311 1 213 246 0 15 chr4 156435244 156435309 -27853353 + (TAA)n Simple_repeat Simple_repeat 3 66 0 788 213 53 125 chr4 156435409 156435969 -27852693 + MER52A LTR ERV1 283 1478 -130 643 200 151 40 chr4 156435999 156436224 -27852438 + MER52A LTR ERV1 1467 1716 -39 672 160 0 42 chr4 156436336 156436480 -27852182 + L1MA3 LINE L1 6168 6305 0 4554 235 55 9 chr4 156436520 156438272 -27850390 - L1MC4a LINE L1 -743 5403 3696 43986 38 1 4 chr4 156438309 156444466 -27844196 + L1PA4 LINE L1 12 6152 -3 3020 246 25 22 chr4 156444571 156445486 -27843176 - L1PA15-16 LINE L1 -4176 2673 1756 506 363 54 5 chr4 156445474 156445697 -27842965 - L1PA15-16 LINE L1 -5433 1406 1173 * 3718 256 37 10 chr4 156445726 156446589 -27842073 - L1PA15-16 LINE L1 -5900 939 54 22 80 0 0 chr4 156447318 156447368 -27841294 + AT_rich Low_complexity Low_complexity 1 50 0 477 34 0 0 chr4 156447514 156447573 -27841089 + (CA)n Simple_repeat Simple_repeat 2 60 0 1170 236 26 38 chr4 156447581 156447894 -27840768 - MLT1A2 LTR MaLR -11 363 55 5822 80 18 12 chr4 156447902 156448727 -27839935 - L1PA10 LINE L1 -1 6167 5338 244 193 88 0 chr4 156448727 156448784 -27839878 - MLT1A2 LTR MaLR -312 62 1 1287 290 117 9 chr4 156448793 156449405 -27839257 - L1ME3 LINE L1 -175 5987 5318 590 131 85 0 chr4 156449422 156449537 -27839125 - THE1C LTR MaLR -206 169 74 22 0 0 0 chr4 156449542 156449564 -27839098 + AT_rich Low_complexity Low_complexity 1 22 0 31 44 0 0 chr4 156449921 156449966 -27838696 + AT_rich Low_complexity Low_complexity 1 45 0 1340 197 70 30 chr4 156451054 156451384 -27837278 - MER2 DNA MER2_type -1 343 1 227 271 0 0 chr4 156451496 156451544 -27837118 - L1M4 LINE L1 -585 5599 5552 465 291 72 25 chr4 156451608 156451928 -27836734 + L1M4 LINE L1 3331 3665 -2481 291 238 0 133 chr4 156451938 156452119 -27836543 + L1M4 LINE L1 3807 3963 -2183 1525 129 0 0 chr4 156452142 156452352 -27836310 + AluSx SINE Alu 2 211 -101 3791 75 7 4 chr4 156452363 156453181 -27835481 + L1PA7 LINE L1 4846 5664 -490 1149 50 25 6 chr4 156453286 156453447 -27835215 + L1PA7 LINE L1 5990 6153 -1 198 0 0 0 chr4 156453625 156453647 -27835015 + (A)n Simple_repeat Simple_repeat 1 22 0 263 328 67 8 chr4 156453682 156453816 -27834846 + MLT1J LTR MaLR 328 469 -42 4763 250 98 23 chr4 156454209 156456280 -27832382 - L1MC3 LINE L1 -170 7673 5372 2409 201 30 46 chr4 156456382 156457095 -27831567 + L1 LINE L1 3146 3846 -2300 1726 272 47 16 chr4 156457128 156457918 -27830744 - L1MC3 LINE L1 -979 5167 4354 446 246 239 34 chr4 156457962 156458315 -27830347 + L1ME2 LINE L1 5683 6104 -62 2060 159 62 32 chr4 156458733 156459261 -27829401 + MLT2A2 LTR ERVL 1 554 0 757 213 49 29 chr4 156459619 156459863 -27828799 - L1MC2 LINE L1 -8 6336 6088 399 82 66 8 chr4 156459994 156460116 -27828546 + (TA)n Simple_repeat Simple_repeat 1 129 0 566 95 57 6 chr4 156460132 156460290 -27828372 + (TA)n Simple_repeat Simple_repeat 2 167 0 181 301 96 58 chr4 156460619 156460775 -27827887 - MER5A DNA MER1_type -1 188 27 1771 124 4 15 chr4 156460855 156461122 -27827540 + AluSx SINE Alu 39 302 -10 197 327 190 33 chr4 156463603 156463814 -27824848 - L2 LINE L2 -337 2977 2734 23 0 0 0 chr4 156464261 156464284 -27824378 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 156465228 156465251 -27823411 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr4 156465297 156465325 -27823337 + AT_rich Low_complexity Low_complexity 1 28 0 1035 121 58 0 chr4 156465516 156465690 -27822972 - L1MA5A LINE L1 -6 6291 6108 5585 236 49 5 chr4 156466663 156468164 -27820498 - L1P LINE L1 -1568 4578 3012 283 222 28 0 chr4 156468175 156468247 -27820415 + L1P LINE L1 2926 2999 -3147 2859 256 45 35 chr4 156468597 156469622 -27819040 - L1P LINE L1 -3148 2998 1964 41392 41 27 3 chr4 156469723 156475363 -27813299 - L1P1 LINE L1 -357 5798 22 468 279 10 45 chr4 156478386 156478457 -27810205 + LTR33A LTR ERVL 330 402 -121 1665 216 71 120 chr4 156478457 156479091 -27809571 + MER77 LTR ERV1 3 605 0 468 279 10 45 chr4 156479091 156479220 -27809442 + LTR33A LTR ERVL 402 523 0 21 57 0 0 chr4 156479347 156479382 -27809280 + AT_rich Low_complexity Low_complexity 1 35 0 253 314 164 0 chr4 156479512 156479652 -27809010 + MIR SINE MIR 49 211 -51 1388 299 22 99 chr4 156479659 156480358 -27808304 + L1MA6 LINE L1 -825 208 -6175 3588 237 113 26 chr4 156480807 156482919 -27805743 + L1MA6 LINE L1 911 2872 -3510 * 10311 184 29 18 chr4 156482900 156486031 -27802631 + L1MA6 LINE L1 3187 6353 -183 2329 115 30 89 chr4 156486031 156486492 -27802170 - Tigger2a DNA MER2_type 0 434 1 10311 184 29 18 chr4 156486492 156486674 -27801988 + L1MA6 LINE L1 6353 6531 -5 27 62 0 0 chr4 156487094 156487142 -27801520 + AT_rich Low_complexity Low_complexity 1 48 0 198 0 0 0 chr4 156487762 156487784 -27800878 + (TATG)n Simple_repeat Simple_repeat 2 23 0 832 281 101 62 chr4 156487784 156488297 -27800365 - L2 LINE L2 -711 2603 2071 23 0 0 0 chr4 156488955 156488978 -27799684 + AT_rich Low_complexity Low_complexity 1 23 0 382 278 125 51 chr4 156489827 156490179 -27798483 + MLT1I LTR MaLR 32 409 0 23 54 0 0 chr4 156491024 156491061 -27797601 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr4 156493317 156493354 -27795308 + AT_rich Low_complexity Low_complexity 1 37 0 283 336 0 0 chr4 156493571 156493675 -27794987 - L1ME3A LINE L1 -9 6161 6058 1610 101 4 9 chr4 156493715 156493942 -27794720 - AluSg/x SINE Alu 0 312 87 740 289 195 34 chr4 156494128 156494599 -27794063 + MLT1G1 LTR MaLR 2 548 -7 323 330 82 26 chr4 156494760 156494993 -27793669 + MLT1G1-int LTR MaLR 293 538 -833 1164 38 0 0 chr4 156495685 156495817 -27792845 + AluY SINE Alu 1 132 -179 311 287 29 69 chr4 156495840 156496014 -27792648 + MLT1G1-int LTR MaLR 1028 1194 -177 511 278 197 27 chr4 156496364 156496775 -27791887 + MLT1F LTR MaLR 75 592 -3 195 329 149 19 chr4 156497775 156497936 -27790726 + L3b LINE CR1 1269 1450 -133 881 266 20 10 chr4 156498011 156498316 -27790346 - Charlie2 DNA MER1_type -4 2858 2551 281 228 41 8 chr4 156498348 156498471 -27790191 - Charlie2 DNA MER1_type -497 2365 2239 818 288 184 13 chr4 156498632 156499316 -27789346 - Charlie2a DNA MER1_type -1875 987 187 261 360 107 17 chr4 156499479 156499712 -27788950 - L2 LINE L2 -821 2493 2240 * 278 211 0 0 chr4 156499708 156499760 -27788902 + L2 LINE L2 2227 2278 -1036 38149 88 11 18 chr4 156500517 156505838 -27782824 - HERVL-A2 LTR ERVL -263 5391 110 210 71 0 0 chr4 156505838 156505866 -27782796 + (TATATG)n Simple_repeat Simple_repeat 2 29 0 2511 7 0 0 chr4 156505866 156506137 -27782525 - AluY SINE Alu -3 308 38 315 230 0 0 chr4 156506153 156506240 -27782422 + (TA)n Simple_repeat Simple_repeat 1 87 0 2963 85 13 0 chr4 156506240 156506630 -27782032 - MLT2A2 LTR ERVL -58 395 1 2153 112 11 0 chr4 156506696 156506982 -27781680 - AluSg SINE Alu -21 289 1 321 336 116 17 chr4 156507513 156507745 -27780917 - L3 LINE CR1 -193 1384 1130 2042 209 30 30 chr4 156507891 156508389 -27780273 + MLT1D LTR MaLR 8 505 0 2063 144 118 5 chr4 156508611 156508994 -27779668 + MSTA LTR MaLR 3 428 0 9302 174 29 4 chr4 156508994 156510605 -27778057 + MSTA-int LTR MaLR 1 1651 0 1955 177 82 15 chr4 156510605 156511006 -27777656 + MSTA LTR MaLR 1 428 0 185 311 131 66 chr4 156511375 156511558 -27777104 - MIR SINE MIR -18 244 50 1327 278 3 27 chr4 156512894 156513268 -27775394 + MLT1A1 LTR MaLR 1 365 0 197 128 0 26 chr4 156513734 156513773 -27774889 + (GAAA)n Simple_repeat Simple_repeat 2 39 0 244 277 0 24 chr4 156513781 156513864 -27774798 + GA-rich Low_complexity Low_complexity 4 84 0 350 312 115 51 chr4 156515299 156515674 -27772988 + L2 LINE L2 1949 2347 -967 1683 183 42 40 chr4 156515777 156515917 -27772745 - L1M3 LINE L1 -546 5622 5484 207 0 0 0 chr4 156515917 156515940 -27772722 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1683 183 42 40 chr4 156515940 156516418 -27772244 - L1M3 LINE L1 -684 5484 4998 * 2724 192 42 59 chr4 156516397 156517104 -27771558 + L1MA10 LINE L1 5611 6305 -29 623 234 14 0 chr4 156517620 156517765 -27770897 + L1MC/D LINE L1 5568 5714 -528 633 234 14 0 chr4 156518407 156518552 -27770110 + L1MD1 LINE L1 5568 5714 -528 237 178 0 0 chr4 156518612 156518657 -27770005 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 2136 167 41 93 chr4 156518658 156519249 -27769413 + L1MD1 LINE L1 5683 6237 -5 474 292 32 64 chr4 156520444 156520663 -27767999 - MIR SINE MIR -30 232 21 28 29 0 0 chr4 156520818 156520853 -27767809 + AT_rich Low_complexity Low_complexity 1 35 0 881 323 125 21 chr4 156521369 156522155 -27766507 - L2 LINE L2 -1 3312 2440 308 292 160 58 chr4 156522456 156522781 -27765881 + L2 LINE L2 2619 2976 -338 303 93 0 0 chr4 156524557 156524600 -27764062 + (CA)n Simple_repeat Simple_repeat 2 44 0 239 243 40 20 chr4 156524648 156524796 -27763866 + (CATATA)n Simple_repeat Simple_repeat 6 156 0 635 335 74 14 chr4 156525040 156525324 -27763338 - L2 LINE L2 -470 2844 2544 210 167 0 0 chr4 156525325 156525361 -27763301 - MIR3 SINE MIR -15 193 158 242 219 16 0 chr4 156525501 156525565 -27763097 + GA-rich Low_complexity Low_complexity 1 65 0 1842 178 38 2 chr4 156526010 156526403 -27762259 + L1MC2 LINE L1 5929 6335 -9 844 140 40 0 chr4 156526710 156526882 -27761780 + L1 LINE L1 5231 5408 -745 1851 158 95 28 chr4 156527160 156527560 -27761102 + MSTA LTR MaLR 2 428 0 324 325 73 8 chr4 156528107 156528230 -27760432 - L2 LINE L2 -1 3312 3182 309 258 0 43 chr4 156529213 156529306 -27759356 + L2 LINE L2 1322 1410 -1904 2710 286 39 25 chr4 156529330 156529665 -27758997 + L2 LINE L2 1660 1989 -1325 2028 122 16 0 chr4 156529665 156529968 -27758694 - AluSx SINE Alu -4 308 1 2710 286 39 25 chr4 156529968 156530039 -27758623 + L2 LINE L2 1989 2058 -1256 1988 156 13 38 chr4 156530039 156530412 -27758250 - THE1B LTR MaLR 0 364 1 2710 286 39 25 chr4 156530412 156530938 -27757724 + L2 LINE L2 2058 2606 -708 1180 252 18 6 chr4 156530942 156531271 -27757391 - L1 LINE L1 -3171 2975 2643 607 239 14 63 chr4 156531269 156531491 -27757171 - L1 LINE L1 -3817 2329 2119 * 3482 171 43 28 chr4 156531491 156532373 -27756289 + L1MA9 LINE L1 4671 5538 -774 2125 153 5 27 chr4 156532373 156532745 -27755917 + THE1B LTR MaLR 1 364 0 10665 112 8 19 chr4 156532745 156534342 -27754320 + THE1B-int LTR MaLR 1 1580 0 2065 150 8 32 chr4 156534342 156534715 -27753947 + THE1B LTR MaLR 1 364 0 3482 171 43 28 chr4 156534715 156534912 -27753750 + L1MA9 LINE L1 5538 5730 -582 330 26 0 0 chr4 156534912 156534951 -27753711 + (CA)n Simple_repeat Simple_repeat 2 40 0 3482 171 43 28 chr4 156534951 156535153 -27753509 + L1MA9 LINE L1 5730 5927 -385 1401 236 19 39 chr4 156535153 156535517 -27753145 + MLT1A1 LTR MaLR 5 361 -4 3482 171 43 28 chr4 156535517 156535751 -27752911 + L1MA9 LINE L1 5927 6306 -6 639 307 120 36 chr4 156535760 156536355 -27752307 + L2 LINE L2 2588 3313 0 606 163 0 0 chr4 156538220 156538361 -27750301 + (TG)n Simple_repeat Simple_repeat 2 142 0 21 57 0 0 chr4 156539690 156539725 -27748937 + AT_rich Low_complexity Low_complexity 1 35 0 2269 104 10 0 chr4 156539768 156540077 -27748585 + AluSx SINE Alu 1 312 0 22 35 0 0 chr4 156540373 156540402 -27748260 + AT_rich Low_complexity Low_complexity 1 29 0 1553 167 63 0 chr4 156540495 156540813 -27747849 + L1MA5 LINE L1 5953 6290 -10 862 208 97 65 chr4 156541599 156541735 -27746927 - L1MA9 LINE L1 -18 6273 6143 186 43 0 0 chr4 156541735 156541758 -27746904 + (CAATA)n Simple_repeat Simple_repeat 3 25 0 862 208 97 65 chr4 156541758 156541987 -27746675 - L1MA9 LINE L1 -148 6143 5862 1836 99 63 43 chr4 156541987 156542289 -27746373 - AluSq SINE Alu -5 308 1 862 208 97 65 chr4 156542289 156542371 -27746291 - L1MA9 LINE L1 -429 5862 5784 1647 176 9 31 chr4 156543750 156544068 -27744594 + LTR22 LTR ERVK 1 311 -198 351 0 0 0 chr4 156544069 156544108 -27744554 + (TG)n Simple_repeat Simple_repeat 2 40 0 2716 73 0 78 chr4 156544108 156544238 -27744424 - L1P5 LINE L1 -369 5782 5643 2179 116 3 3 chr4 156544238 156544539 -27744123 + AluSp SINE Alu 1 301 -12 2716 73 0 78 chr4 156544539 156544844 -27743818 - L1P5 LINE L1 -508 5643 5381 3207 196 124 78 chr4 156545304 156545713 -27742949 + L1MC3 LINE L1 6707 7096 -689 249 239 15 15 chr4 156545713 156545780 -27742882 + MLT1E LTR MaLR 64 130 -463 3207 196 124 78 chr4 156545780 156546336 -27742326 + L1MC3 LINE L1 7096 7785 0 2360 63 3 7 chr4 156546553 156546854 -27741808 - AluY SINE Alu -11 300 1 1685 268 72 9 chr4 156547983 156548535 -27740127 - L1ME3A LINE L1 -1 6169 5583 21 82 0 0 chr4 156549337 156549386 -27739276 + AT_rich Low_complexity Low_complexity 1 49 0 215 211 0 35 chr4 156549607 156549664 -27738998 + (TATATG)n Simple_repeat Simple_repeat 2 56 0 2336 82 0 3 chr4 156550836 156551140 -27737522 + AluY SINE Alu 1 303 -8 23 68 0 0 chr4 156551482 156551526 -27737136 + AT_rich Low_complexity Low_complexity 1 44 0 343 303 86 43 chr4 156551804 156552259 -27736403 + MLT1H LTR MaLR 16 567 0 640 283 147 44 chr4 156552325 156552736 -27735926 + MLT1G1 LTR MaLR 1 394 -148 10184 212 20 11 chr4 156553112 156553982 -27734680 + L1PB4 LINE L1 2801 3661 -2495 198 0 0 0 chr4 156553982 156554004 -27734658 + (CAA)n Simple_repeat Simple_repeat 3 24 0 10184 212 20 11 chr4 156554004 156556452 -27732210 + L1PB4 LINE L1 3661 6147 -9 1252 257 50 101 chr4 156556556 156557210 -27731452 + MLT1E2 LTR MaLR 6 626 0 250 272 140 53 chr4 156557210 156557435 -27731227 + MLT1F LTR MaLR 292 536 -6 227 300 33 25 chr4 156557452 156557572 -27731090 + L1MC/D LINE L1 5335 5455 -2353 * 258 279 19 19 chr4 156557546 156557650 -27731012 + L1MCa LINE L1 8 111 -6315 6816 56 12 5 chr4 156557658 156558839 -27729823 + L1PA7 LINE L1 4948 6151 -3 1699 240 110 18 chr4 156558848 156560203 -27728459 + L1MCa LINE L1 1565 3150 -3276 2127 85 57 0 chr4 156560268 156560550 -27728112 - AluY SINE Alu -13 298 1 22 0 0 0 chr4 156560735 156560757 -27727905 + AT_rich Low_complexity Low_complexity 1 22 0 230 0 0 32 chr4 156561181 156561212 -27727450 + (TATAA)n Simple_repeat Simple_repeat 5 34 0 24 32 0 0 chr4 156561252 156561283 -27727379 + AT_rich Low_complexity Low_complexity 1 31 0 530 88 0 0 chr4 156562804 156562884 -27725778 + L1PA6 LINE L1 6074 6153 -1 1310 169 134 54 chr4 156563079 156563286 -27725376 - MER44D DNA MER2_type -1883 608 419 447 19 0 0 chr4 156563286 156563338 -27725324 + (TG)n Simple_repeat Simple_repeat 2 53 0 1310 169 134 54 chr4 156563338 156563443 -27725219 - MER44D DNA MER2_type -2072 419 1 8666 47 10 1 chr4 156563496 156564557 -27724105 + MER11C LTR ERVK 1 1071 0 222 37 0 0 chr4 156564588 156564615 -27724047 + (T)n Simple_repeat Simple_repeat 1 27 0 2790 22 0 6 chr4 156565439 156565757 -27722905 - AluYb8 SINE Alu -2 316 1 2264 94 0 10 chr4 156565757 156566064 -27722598 - AluSx SINE Alu -8 304 1 1112 219 52 8 chr4 156566864 156567115 -27721547 + MSTB1 LTR MaLR 1 262 -170 21 57 0 0 chr4 156567574 156567609 -27721053 + AT_rich Low_complexity Low_complexity 1 35 0 2516 79 9 0 chr4 156569186 156569528 -27719134 - L1PB1 LINE L1 0 6867 6523 351 0 0 0 chr4 156569575 156569614 -27719048 + (TG)n Simple_repeat Simple_repeat 2 40 0 496 127 57 4 chr4 156569614 156569846 -27718816 + (TA)n Simple_repeat Simple_repeat 1 244 0 11322 158 58 55 chr4 156569859 156571934 -27716728 - L1PB1 LINE L1 -360 6507 4440 234 0 0 0 chr4 156571934 156571960 -27716702 + (TTG)n Simple_repeat Simple_repeat 2 27 0 11322 158 58 55 chr4 156571960 156572580 -27716082 - L1PB1 LINE L1 -2427 4440 3823 1449 143 23 0 chr4 156572580 156572796 -27715866 - AluSg/x SINE Alu -6 306 86 11322 158 58 55 chr4 156572796 156575567 -27713095 - L1PB1 LINE L1 -3044 3823 1062 2530 97 17 0 chr4 156575567 156575916 -27712746 + THE1A LTR MaLR 1 355 0 11369 101 9 5 chr4 156575916 156577490 -27711172 + THE1A-int LTR MaLR 1 1580 0 2535 77 50 6 chr4 156577490 156577830 -27710832 + THE1A LTR MaLR 1 355 0 11322 158 58 55 chr4 156577830 156578013 -27710649 - L1PB1 LINE L1 -5804 1063 637 1057 153 10 0 chr4 156578016 156578212 -27710450 - L1PB1 LINE L1 -6663 200 3 2077 209 38 59 chr4 156578410 156579022 -27709640 + LTR9 LTR ERV1 1 599 -13 1719 199 20 3 chr4 156579452 156579808 -27708854 + MER47A DNA MER2_type 2 363 -3 382 279 15 15 chr4 156579842 156579978 -27708684 + MARNA DNA Mariner 401 536 -50 767 216 34 10 chr4 156580531 156580735 -27707927 + MER3 DNA MER1_type 1 209 0 973 215 18 27 chr4 156580746 156580969 -27707693 + MER58A DNA MER1_type 4 224 0 4279 172 41 9 chr4 156581576 156583188 -27705474 - L1MB1 LINE L1 0 6168 4498 858 39 0 0 chr4 156583741 156583844 -27704818 + L1PA6 LINE L1 6047 6149 -5 756 311 67 19 chr4 156584225 156584585 -27704077 + MLT1I LTR MaLR 7 383 -26 27 29 0 0 chr4 156587220 156587254 -27701408 + AT_rich Low_complexity Low_complexity 1 34 0 1870 40 53 0 chr4 156587371 156587599 -27701063 + AluY SINE Alu 69 308 -3 29 0 0 0 chr4 156587632 156587661 -27701001 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 28 chr4 156587866 156587886 -27700776 + AT_rich Low_complexity Low_complexity 1 21 -14 2466 78 0 9 chr4 156587886 156588219 -27700443 + L1PA7 LINE L1 5823 6152 -2 25 0 0 28 chr4 156588219 156588234 -27700428 + AT_rich Low_complexity Low_complexity 21 35 0 2794 10 0 0 chr4 156588334 156588638 -27700024 - AluYa5 SINE Alu -7 304 1 1392 186 16 69 chr4 156588757 156589063 -27699599 - AluJo SINE Alu -20 292 3 270 0 0 0 chr4 156589161 156589191 -27699471 + (CA)n Simple_repeat Simple_repeat 2 31 0 977 280 64 91 chr4 156589299 156589733 -27698929 + HAL1b LINE L1 42 451 -897 940 221 59 0 chr4 156589733 156589937 -27698725 + MER20 DNA MER1_type 4 219 0 977 280 64 91 chr4 156589937 156590219 -27698443 + HAL1b LINE L1 451 739 -609 2157 112 97 0 chr4 156590523 156590853 -27697809 + THE1B LTR MaLR 1 362 -2 375 280 89 30 chr4 156591248 156591416 -27697246 + L1M4c LINE L1 1205 1382 -5002 12225 178 50 14 chr4 156591425 156593816 -27694846 + L1M1 LINE L1 13 2489 -5076 577 150 0 83 chr4 156593839 156593959 -27694703 + AluJb SINE Alu 21 130 -182 255 158 0 0 chr4 156593974 156594012 -27694650 - AluSp SINE Alu -141 162 125 317 290 21 0 chr4 156594025 156594118 -27694544 - L1MC4 LINE L1 -1340 6702 6608 891 197 0 45 chr4 156594133 156594311 -27694351 + AluSg/x SINE Alu 127 296 -16 3882 112 19 22 chr4 156594312 156594991 -27693671 + L1M1 LINE L1 2493 3169 -4396 3636 210 23 11 chr4 156594965 156595904 -27692758 + L1M1 LINE L1 3481 4438 -3127 * 2141 92 7 14 chr4 156595904 156596188 -27692474 - AluSx SINE Alu -15 297 16 3636 210 23 11 chr4 156596188 156596277 -27692385 + L1M1 LINE L1 4438 4524 -3041 21 0 0 0 chr4 156596701 156596722 -27691940 + AT_rich Low_complexity Low_complexity 1 21 0 431 319 54 25 chr4 156598908 156599112 -27689550 - MLT1K LTR MaLR -65 523 314 219 189 0 0 chr4 156600084 156600121 -27688541 - L2 LINE L2 -17 3255 3219 405 95 0 0 chr4 156600284 156600347 -27688315 + (TC)n Simple_repeat Simple_repeat 2 64 0 2399 71 0 0 chr4 156601028 156601322 -27687340 + AluY SINE Alu 1 294 -17 234 184 0 0 chr4 156601570 156601608 -27687054 - L2 LINE L2 -19 3294 3257 502 358 80 42 chr4 156601710 156602490 -27686172 + L2 LINE L2 2258 3065 -207 1819 163 48 57 chr4 156603195 156603613 -27685049 + MLT2D LTR ERVL 1 414 0 405 0 0 0 chr4 156606150 156606195 -27682467 + (CA)n Simple_repeat Simple_repeat 2 46 0 580 213 74 16 chr4 156606940 156607184 -27681478 + MER33 DNA MER1_type 38 295 -29 5741 120 34 21 chr4 156607218 156608199 -27680463 - L1MA3 LINE L1 0 6305 5307 2265 108 0 0 chr4 156608199 156608496 -27680166 - AluSq SINE Alu -16 297 1 5741 120 34 21 chr4 156608496 156608585 -27680077 - L1MA3 LINE L1 -998 5307 5221 212 320 128 17 chr4 156608641 156608813 -27679849 + L2 LINE L2 770 960 -2354 265 182 106 30 chr4 156609015 156609081 -27679581 + L2 LINE L2 3238 3308 -5 236 300 122 0 chr4 156609513 156609603 -27679059 + MIR SINE MIR 63 163 -99 1146 256 84 43 chr4 156609606 156610020 -27678642 + MER70B LTR ERVL 5 435 -143 246 346 69 19 chr4 156610341 156610500 -27678162 + L2 LINE L2 2594 2760 -554 1050 255 61 78 chr4 156610530 156611133 -27677529 - MLT1E LTR MaLR 0 593 1 575 189 101 40 chr4 156611139 156611366 -27677296 - L1M2 LINE L1 -2948 3267 3027 25 31 0 0 chr4 156611446 156611478 -27677184 + AT_rich Low_complexity Low_complexity 1 32 0 949 192 0 52 chr4 156611645 156611838 -27676824 - AluJb SINE Alu -125 187 5 311 276 69 17 chr4 156611844 156611960 -27676702 - L1M2 LINE L1 -3251 2964 2843 1236 124 0 52 chr4 156611960 156612193 -27676469 - L1PA7 LINE L1 -6 6148 5928 21 57 0 0 chr4 156612472 156612507 -27676155 + AT_rich Low_complexity Low_complexity 1 35 0 31497 119 11 65 chr4 156616944 156618763 -27669899 - L1P3 LINE L1 -544 5610 3695 2214 115 0 22 chr4 156618763 156619075 -27669587 - AluSg SINE Alu -5 305 1 31497 119 11 65 chr4 156619075 156623185 -27665477 - L1P3 LINE L1 -2459 3695 12 2201 249 55 43 chr4 156623200 156623530 -27665132 - L1M2 LINE L1 -3368 2847 2522 1698 147 20 103 chr4 156623530 156623926 -27664736 + MLT1A1 LTR MaLR 1 363 -2 2201 249 55 43 chr4 156623926 156624964 -27663698 - L1M2 LINE L1 -3693 2522 1540 667 347 25 9 chr4 156624994 156625317 -27663345 - L1MEc LINE L1 -6013 383 56 24 53 0 0 chr4 156625892 156625930 -27662732 + AT_rich Low_complexity Low_complexity 1 38 0 388 174 43 0 chr4 156625993 156626062 -27662600 + L1PA16 LINE L1 5782 5853 -313 282 193 18 0 chr4 156626419 156626476 -27662186 + L1MEc LINE L1 112 169 -6227 6975 74 23 1 chr4 156626496 156628057 -27660605 + L1PA7 LINE L1 4574 6151 -3 378 338 67 43 chr4 156628141 156628517 -27660145 + L1MEc LINE L1 331 715 -5681 1098 247 74 79 chr4 156628580 156629025 -27659637 - MLT1E LTR MaLR -140 453 11 718 304 79 27 chr4 156629043 156629697 -27658965 + L1MEc LINE L1 728 1262 -4955 2763 106 23 0 chr4 156629891 156630287 -27658375 - L1P LINE L1 -3391 2755 2351 13674 67 9 36 chr4 156630287 156632828 -27655834 + L1PB3 LINE L1 3643 6143 -11 396 59 0 0 chr4 156632829 156632845 -27655817 + (CA)n Simple_repeat Simple_repeat 1 67 0 396 59 0 0 chr4 156632845 156632896 -27655766 + (CA)n Simple_repeat Simple_repeat 2 52 0 21438 98 26 1 chr4 156633185 156636357 -27652305 - L1P LINE L1 -2366 3780 531 2425 109 73 3 chr4 156636549 156636889 -27651773 - THE1B LTR MaLR 0 364 1 2110 144 0 0 chr4 156636952 156637264 -27651398 - AluSx SINE Alu 0 312 1 24 32 0 0 chr4 156637574 156637605 -27651057 + AT_rich Low_complexity Low_complexity 1 31 0 530 195 78 23 chr4 156637828 156637956 -27650706 + MLT1H LTR MaLR 415 549 0 1859 166 0 25 chr4 156638058 156638378 -27650284 + AluJb SINE Alu 1 312 0 1206 104 0 6 chr4 156638448 156638612 -27650050 - L1PA8 LINE L1 -2 6170 6008 221 333 0 0 chr4 156640701 156640764 -27647898 - L2 LINE L2 -19 3253 3191 2437 83 0 6 chr4 156641030 156641342 -27647320 + AluSx SINE Alu 1 310 -2 1195 172 0 0 chr4 156641354 156641546 -27647116 + AluJo SINE Alu 121 312 0 422 142 92 3 chr4 156641676 156641811 -27646851 - MER53 DNA DNA -4 185 1 846 141 8 0 chr4 156642898 156643019 -27645643 + AluJo/FLAM SINE Alu 2 123 -189 2536 57 0 0 chr4 156643019 156643318 -27645344 - AluY SINE Alu -12 299 1 469 206 28 9 chr4 156643386 156643493 -27645169 - L2 LINE L2 -3 3310 3202 1991 118 17 14 chr4 156643510 156643992 -27644670 - AluSx SINE Alu 0 312 1 181 105 26 53 chr4 156644408 156644446 -27644216 - MIR SINE MIR -14 248 212 232 318 106 0 chr4 156644486 156644571 -27644091 - MIR SINE MIR -163 99 6 1847 148 10 7 chr4 156644663 156644960 -27643702 - AluJo SINE Alu -14 298 1 1041 240 80 0 chr4 156645090 156645365 -27643297 - LTR16A1 LTR ERVL 0 457 161 1990 261 54 40 chr4 156646581 156647506 -27641156 + L1M4 LINE L1 3052 3989 -2157 1649 186 36 41 chr4 156647942 156647963 -27640699 - MLT1B LTR MaLR 0 390 370 2732 82 0 72 chr4 156647963 156648367 -27640295 - THE1C LTR MaLR 0 375 1 1649 186 36 41 chr4 156648367 156648733 -27639929 - MLT1B LTR MaLR -20 370 5 1593 196 0 10 chr4 156649391 156649692 -27638970 - L1M4 LINE L1 -425 5759 5462 2242 127 0 0 chr4 156649693 156650000 -27638662 - AluSx SINE Alu -5 307 1 1082 299 47 40 chr4 156650064 156650489 -27638173 + L1M2a LINE L1 1 428 -6740 378 347 17 35 chr4 156650492 156650665 -27637997 + L1M2a LINE L1 1100 1269 -5899 1037 296 36 70 chr4 156650852 156651549 -27637113 + L1M2a LINE L1 1389 2061 -5107 5853 61 181 0 chr4 156651683 156652503 -27636159 - SVA Other Other -381 1005 38 252 0 0 0 chr4 156652508 156652536 -27636126 + (GGGAGA)n Simple_repeat Simple_repeat 1 28 0 252 270 10 90 chr4 156652744 156652844 -27635818 - MIR SINE MIR -111 151 60 12236 93 12 7 chr4 156652950 156654635 -27634027 - L1P3 LINE L1 -4763 1698 6 183 319 0 55 chr4 156654782 156654873 -27633789 + L2 LINE L2 2447 2532 -782 1777 161 18 53 chr4 156655133 156655475 -27633187 + MLT1C LTR MaLR 132 461 -6 22 0 0 0 chr4 156655699 156655721 -27632941 + AT_rich Low_complexity Low_complexity 1 22 0 1874 201 32 11 chr4 156655845 156656219 -27632443 + MSTA LTR MaLR 4 385 -43 302 265 6 22 chr4 156656483 156656664 -27631998 + CT-rich Low_complexity Low_complexity 3 180 0 2027 115 0 17 chr4 156658643 156658956 -27629706 - AluSx SINE Alu 0 308 1 1390 243 73 16 chr4 156659801 156659942 -27628720 - MLT1J LTR MaLR -104 407 276 2766 122 41 19 chr4 156659942 156660360 -27628302 - MSTA LTR MaLR -1 427 1 1390 243 73 16 chr4 156660360 156660601 -27628061 - MLT1J LTR MaLR -235 276 3 267 247 0 79 chr4 156660620 156660709 -27627953 - MIR SINE MIR -115 147 66 285 212 0 15 chr4 156661057 156661123 -27627539 + L2 LINE L2 3208 3272 0 189 0 0 0 chr4 156661174 156661195 -27627467 + (TA)n Simple_repeat Simple_repeat 2 22 0 248 221 35 71 chr4 156661195 156661308 -27627354 - L1MC4 LINE L1 -1339 6703 6595 236 111 22 0 chr4 156661315 156661360 -27627302 + (TA)n Simple_repeat Simple_repeat 1 46 0 3614 274 64 13 chr4 156664418 156665432 -27623230 - HERVL40 LTR ERVL -1943 3587 2522 588 309 22 17 chr4 156665431 156665661 -27623001 - HERVL40 LTR ERVL -3919 1611 1381 * 311 254 0 28 chr4 156667189 156667260 -27621402 + AluSg SINE Alu 37 105 -195 447 278 70 56 chr4 156667974 156668258 -27620404 + L1MEc LINE L1 1349 1636 -4760 2073 126 0 0 chr4 156668265 156668599 -27620063 - L1P LINE L1 -2513 3633 3300 2437 88 0 0 chr4 156668605 156668910 -27619752 - AluY SINE Alu -6 305 1 755 198 91 36 chr4 156669626 156669879 -27618783 + LTR40b LTR ERVL 196 462 0 316 326 74 77 chr4 156671314 156671912 -27616750 + L2 LINE L2 1797 2392 -922 416 167 0 0 chr4 156672844 156672922 -27615740 - MLT1I LTR MaLR -2 407 330 310 224 75 37 chr4 156673167 156673274 -27615388 - MLT1J2 LTR MaLR -62 388 233 2251 112 0 13 chr4 156673548 156673862 -27614800 + AluSx SINE Alu 1 310 -2 246 275 14 0 chr4 156674246 156674315 -27614347 + L2 LINE L2 3243 3312 -1 324 189 176 0 chr4 156676098 156676172 -27612490 - L2 LINE L2 0 3272 3186 226 311 0 0 chr4 156676288 156676349 -27612313 - L2 LINE L2 -73 3199 3139 286 271 181 6 chr4 156676687 156676864 -27611798 + L1ME4a LINE L1 5869 6076 -45 297 0 0 0 chr4 156676864 156676897 -27611765 + (CAA)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr4 156676912 156676933 -27611729 + AT_rich Low_complexity Low_complexity 1 21 0 2149 114 0 3 chr4 156677661 156677951 -27610711 - AluSx SINE Alu -19 293 5 216 0 0 0 chr4 156681417 156681441 -27607221 + (A)n Simple_repeat Simple_repeat 1 24 0 1761 162 11 46 chr4 156681607 156682083 -27606579 + pTR5 LTR ERV1 742 1200 -1238 1496 191 26 54 chr4 156682884 156683107 -27605555 - MER58B DNA MER1_type -2080 340 129 2044 122 3 58 chr4 156683107 156683434 -27605228 + AluSx SINE Alu 1 309 -3 1496 191 26 54 chr4 156683434 156683560 -27605102 - MER58B DNA MER1_type -2291 129 1 25 0 0 0 chr4 156683784 156683809 -27604853 + AT_rich Low_complexity Low_complexity 1 25 0 334 225 25 50 chr4 156685504 156685624 -27603038 + MLT1H LTR MaLR 94 210 -339 2685 205 31 17 chr4 156686100 156686808 -27601854 + L1 LINE L1 4016 4733 -1413 3932 107 23 2 chr4 156687456 156688584 -27600078 - L1P3 LINE L1 -421 5733 4582 612 82 0 20 chr4 156689092 156689190 -27599472 + L1PA6 LINE L1 6059 6154 0 189 0 0 0 chr4 156689478 156689499 -27599163 + (TG)n Simple_repeat Simple_repeat 1 21 0 183 156 0 0 chr4 156689544 156689576 -27599086 + (CATATA)n Simple_repeat Simple_repeat 2 33 0 213 39 0 0 chr4 156689576 156689602 -27599060 + (GA)n Simple_repeat Simple_repeat 2 27 0 251 143 24 0 chr4 156690295 156690337 -27598325 + L2 LINE L2 3262 3304 -9 450 256 31 8 chr4 156690640 156690769 -27597893 + MIR SINE MIR 7 138 -124 201 264 19 0 chr4 156691222 156691275 -27597387 - L2 LINE L2 0 3272 3219 * 219 320 21 10 chr4 156691245 156691342 -27597320 - MIR SINE MIR -18 244 147 790 199 48 16 chr4 156691735 156691921 -27596741 + MER58A DNA MER1_type 33 224 0 479 311 54 0 chr4 156692789 156692956 -27595706 + LTR16C LTR ERVL 71 246 -245 1866 253 70 3 chr4 156693320 156694054 -27594608 + L1M4 LINE L1 4149 4931 -1215 365 206 11 0 chr4 156694058 156694150 -27594512 + GA-rich Low_complexity Low_complexity 3 95 0 28 29 0 0 chr4 156694408 156694443 -27594219 + AT_rich Low_complexity Low_complexity 1 35 0 2639 167 9 6 chr4 156695406 156696041 -27592621 + L1P LINE L1 3102 3780 -2366 2167 113 0 0 chr4 156696481 156696793 -27591869 - AluY SINE Alu 0 314 3 183 212 376 0 chr4 156696909 156696994 -27591668 + L2 LINE L2 3197 3313 0 3956 116 90 101 chr4 156697683 156699118 -27589544 + pTR5 LTR ERV1 69 2438 0 326 242 57 73 chr4 156699257 156699381 -27589281 - MIR SINE MIR -136 126 5 226 330 23 0 chr4 156699868 156699956 -27588706 - MIR3 SINE MIR -10 198 109 186 167 14 139 chr4 156700647 156700719 -27587943 + MIR SINE MIR 150 212 -50 409 332 140 37 chr4 156700761 156701345 -27587317 - L2 LINE L2 0 3313 2672 487 215 124 10 chr4 156701618 156701858 -27586804 + MLT1A1 LTR MaLR 1 314 -51 733 272 20 60 chr4 156702017 156702366 -27586296 + MER46C DNA MER2_type 2 336 -2 195 167 83 62 chr4 156702418 156702466 -27586196 + L2 LINE L2 3197 3245 -27 1836 133 52 4 chr4 156704270 156704540 -27584122 - AluSx SINE Alu -27 285 3 339 227 5 135 chr4 156704916 156705101 -27583561 - L2 LINE L2 -4 3309 3149 9193 109 3 0 chr4 156705201 156706631 -27582031 + L1P LINE L1 3713 5146 -1000 26 30 0 0 chr4 156706814 156706847 -27581815 + AT_rich Low_complexity Low_complexity 1 33 0 2859 59 6 0 chr4 156706856 156707212 -27581450 - L1PA7 LINE L1 -2 6152 5795 403 336 0 7 chr4 156707232 156707378 -27581284 - LTR16A LTR ERVL -144 306 162 414 155 0 14 chr4 156707427 156707498 -27581164 - MSTB LTR MaLR -356 70 1 287 263 0 0 chr4 156707498 156707570 -27581092 + LTR16C LTR ERVL 420 491 0 1820 211 3 8 chr4 156709435 156709800 -27578862 + MLT1A1 LTR MaLR 1 363 -2 1974 164 99 27 chr4 156710252 156710655 -27578007 - Tigger2a DNA MER2_type 0 434 3 310 294 80 7 chr4 156710655 156710794 -27577868 + MIR SINE MIR 13 144 -64 31 44 0 0 chr4 156710822 156710867 -27577795 + AT_rich Low_complexity Low_complexity 1 45 0 1565 159 65 40 chr4 156710870 156711221 -27577441 + Tigger2a DNA MER2_type 9 368 -66 211 384 90 41 chr4 156711478 156711744 -27576918 + L2 LINE L2 2994 3272 0 1013 207 30 5 chr4 156712904 156713107 -27575555 - MER3 DNA MER1_type -1 208 1 22 0 0 0 chr4 156713330 156713352 -27575310 + AT_rich Low_complexity Low_complexity 1 22 0 309 331 55 8 chr4 156713772 156713899 -27574763 + MIR3 SINE MIR 30 162 -46 184 292 119 87 chr4 156714380 156714599 -27574063 + L2 LINE L2 3047 3272 0 245 306 73 57 chr4 156714693 156714817 -27573845 - L2 LINE L2 -194 3078 2953 9111 158 10 20 chr4 156715457 156717165 -27571497 + L1P LINE L1 886 2575 -3571 1614 113 147 3 chr4 156717161 156717481 -27571181 + L1P LINE L1 3031 3396 -2750 * 3122 150 12 25 chr4 156717581 156718149 -27570513 + L1MC1 LINE L1 5773 6333 0 788 289 69 57 chr4 156718197 156718616 -27570046 - L2 LINE L2 -571 2743 2320 530 255 34 29 chr4 156718616 156718824 -27569838 + MER63 DNA MER1_type 1 209 -721 568 331 165 25 chr4 156719176 156719729 -27568933 - L2 LINE L2 -1620 1694 1065 316 355 58 21 chr4 156719863 156720052 -27568610 - MIR SINE MIR -66 196 1 29 28 0 0 chr4 156720422 156720458 -27568204 + AT_rich Low_complexity Low_complexity 1 36 0 2234 88 7 0 chr4 156721483 156721777 -27566885 + AluSc SINE Alu 1 296 -13 7012 61 14 0 chr4 156722186 156723170 -27565492 + L1PA8 LINE L1 5174 6170 -2 1823 167 3 35 chr4 156723247 156723442 -27565220 - AluJo SINE Alu -4 308 125 2327 84 3 0 chr4 156723442 156723741 -27564921 + AluY SINE Alu 1 300 -11 1823 167 3 35 chr4 156723741 156723862 -27564800 - AluJo SINE Alu -187 125 2 343 304 73 32 chr4 156724329 156724551 -27564111 + MIR SINE MIR 32 260 -2 556 336 130 45 chr4 156724854 156725662 -27563000 - L2 LINE L2 -206 3066 2174 266 276 9 48 chr4 156725710 156725815 -27562847 - MIR SINE MIR -87 175 75 1673 133 51 3 chr4 156726731 156727024 -27561638 - LTR26 LTR ERV1 -233 370 64 210 421 82 6 chr4 156727998 156728181 -27560481 + L3b LINE CR1 1355 1551 -32 341 333 114 8 chr4 156729518 156729650 -27559012 + L2 LINE L2 3127 3272 0 449 113 0 0 chr4 156731696 156731758 -27556904 - L1MC/D LINE L1 -567 5766 5705 21 0 0 0 chr4 156733214 156733235 -27555427 + AT_rich Low_complexity Low_complexity 1 21 0 402 380 36 71 chr4 156733446 156733896 -27554766 + L2 LINE L2 2812 3245 -27 2316 190 24 42 chr4 156734077 156734614 -27554048 + L1M2 LINE L1 4790 5303 -1009 180 0 0 0 chr4 156734614 156734634 -27554028 + (CAAAC)n Simple_repeat Simple_repeat 5 24 0 2316 190 24 42 chr4 156734634 156734944 -27553718 + L1M2 LINE L1 5303 5617 -695 2537 78 3 11 chr4 156734946 156735293 -27553369 + MLT2A1 LTR ERVL 1 344 -100 311 331 55 8 chr4 156736062 156736189 -27552473 + MIR3 SINE MIR 30 162 -46 237 328 66 8 chr4 156736208 156736330 -27552332 - MER117 DNA MER1_type -17 180 52 249 301 81 57 chr4 156736982 156737105 -27551557 - L2 LINE L2 -194 3078 2953 198 319 0 55 chr4 156737439 156737530 -27551132 - L2 LINE L2 -782 2532 2447 7902 172 27 19 chr4 156737677 156738070 -27550592 + L1P3 LINE L1 6 394 -6067 261 0 0 0 chr4 156738070 156738099 -27550563 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7902 172 27 19 chr4 156738099 156739249 -27549413 + L1P3 LINE L1 394 1562 -4899 1942 209 48 24 chr4 156739365 156739777 -27548885 - MER68 LTR ERV1 -121 441 20 3691 205 75 10 chr4 156740099 156741205 -27547457 - L1MD2 LINE L1 -10 6349 5135 46 19 0 0 chr4 156741211 156741264 -27547398 + AT_rich Low_complexity Low_complexity 1 53 0 353 270 22 44 chr4 156741264 156741401 -27547261 - L1MD2 LINE L1 -1004 5142 5009 22 35 0 0 chr4 156742944 156742973 -27545689 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 156742994 156743015 -27545647 + AT_rich Low_complexity Low_complexity 1 21 0 268 105 0 0 chr4 156743341 156743379 -27545283 + L1MD2 LINE L1 5561 5598 -761 998 216 80 78 chr4 156743388 156743787 -27544875 - MER57A LTR ERV1 0 403 4 2523 227 134 6 chr4 156743794 156744451 -27544211 + L1MD2 LINE L1 5603 6343 -16 25 31 0 0 chr4 156745586 156745618 -27543044 + AT_rich Low_complexity Low_complexity 1 32 0 286 298 80 58 chr4 156745631 156745819 -27542843 + MIR SINE MIR 15 206 -56 292 250 16 0 chr4 156746006 156746070 -27542592 + L2 LINE L2 3249 3313 0 2002 245 49 28 chr4 156746819 156747916 -27540746 + L1ME1 LINE L1 4843 6161 -5 186 313 62 12 chr4 156747918 156747998 -27540664 - L2 LINE L2 -222 3091 3008 477 274 160 52 chr4 156748120 156748463 -27540199 - L3 LINE CR1 -126 1451 1072 244 255 276 10 chr4 156748763 156748861 -27539801 - L2 LINE L2 -1 3312 3189 246 349 114 0 chr4 156748899 156749031 -27539631 - L3 LINE CR1 -899 678 532 509 280 33 42 chr4 156749275 156749489 -27539173 - MIR SINE MIR 0 262 51 2569 163 32 4 chr4 156749597 156750064 -27538598 - L1PA16 LINE L1 -3 6163 5684 266 284 21 11 chr4 156750209 156750304 -27538358 + MER69 DNA AcHobo 2431 2526 0 2245 95 3 0 chr4 156750580 156750875 -27537787 - AluSg SINE Alu -14 296 1 646 132 0 12 chr4 156751165 156751331 -27537331 + L1PA16 LINE L1 5909 6163 -3 1044 163 6 12 chr4 156751396 156751568 -27537094 - FAM SINE Alu -4 171 1 208 0 62 0 chr4 156751796 156751828 -27536834 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 279 225 144 9 chr4 156751851 156751962 -27536700 - L2 LINE L2 -6 3307 3182 370 219 0 0 chr4 156752093 156752157 -27536505 + MER91B DNA MER1_type 19 82 -108 2717 26 0 0 chr4 156752170 156752480 -27536182 - AluY SINE Alu -1 310 1 718 270 22 11 chr4 156752633 156752811 -27535851 - MLT1J LTR MaLR -271 240 61 416 340 70 0 chr4 156753043 156753258 -27535404 - L3b LINE CR1 -246 1337 1108 201 39 0 0 chr4 156753936 156753962 -27534700 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 303 318 82 0 chr4 156753966 156754051 -27534611 - L2 LINE L2 -26 3287 3196 964 154 134 92 chr4 156754994 156755352 -27533310 - THE1C LTR MaLR 0 375 3 6251 155 13 13 chr4 156755354 156756405 -27532257 - THE1C-int LTR MaLR 0 1580 530 1772 175 9 19 chr4 156757462 156757777 -27530885 + AluJo SINE Alu 1 312 0 376 317 62 21 chr4 156757875 156758020 -27530642 + MER5B DNA MER1_type 1 151 -27 465 260 136 18 chr4 156759846 156759951 -27528711 + MER5A DNA MER1_type 1 92 -97 2038 99 43 20 chr4 156759951 156760255 -27528407 - AluY SINE Alu 0 311 1 465 260 136 18 chr4 156760255 156760318 -27528344 + MER5A DNA MER1_type 92 189 0 247 322 93 49 chr4 156760400 156760463 -27528199 - L2 LINE L2 0 3313 3254 7987 78 6 9 chr4 156760463 156761538 -27527124 - MER11C LTR ERVK 0 1071 1 247 322 93 49 chr4 156761538 156761657 -27527005 - L2 LINE L2 -59 3254 3123 30 27 0 0 chr4 156762430 156762467 -27526195 + AT_rich Low_complexity Low_complexity 1 37 0 2963 191 64 5 chr4 156762534 156762692 -27525970 - L1MA10 LINE L1 -4 6330 6183 405 0 0 0 chr4 156762692 156762737 -27525925 + (TG)n Simple_repeat Simple_repeat 2 46 0 2963 191 64 5 chr4 156762737 156763202 -27525460 - L1MA10 LINE L1 -151 6183 5670 242 148 19 0 chr4 156763327 156763381 -27525281 + (TA)n Simple_repeat Simple_repeat 1 55 0 307 278 11 11 chr4 156763383 156763473 -27525189 + L1MC4 LINE L1 6614 6703 -1339 6212 220 57 28 chr4 156763597 156764362 -27524300 + L1M4c LINE L1 2025 2766 -3616 3821 181 30 10 chr4 156764362 156765070 -27523592 + MER72 LTR ERV1 1 722 0 6212 220 57 28 chr4 156765070 156766372 -27522290 + L1M4c LINE L1 2766 4234 -2148 1572 158 112 0 chr4 156766372 156766491 -27522171 + AluJo SINE Alu 1 105 -207 189 74 0 0 chr4 156766491 156766518 -27522144 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 1572 158 112 0 chr4 156766518 156766658 -27522004 + AluJo SINE Alu 105 289 -23 6212 220 57 28 chr4 156766658 156767745 -27520917 + L1M4c LINE L1 4234 5288 -1094 586 246 0 0 chr4 156767745 156767863 -27520799 + FLAM_A SINE Alu 4 121 -12 577 84 72 42 chr4 156767887 156768053 -27520609 + GA-rich Low_complexity Low_complexity 5 175 0 440 86 81 63 chr4 156768092 156768266 -27520396 + GA-rich Low_complexity Low_complexity 4 180 0 678 221 25 0 chr4 156768295 156768458 -27520204 + L1M4c LINE L1 5276 5442 -940 2505 227 20 59 chr4 156768471 156769185 -27519477 + L1MA9 LINE L1 7 692 -6338 1021 205 30 21 chr4 156769187 156769421 -27519241 + L1MA9 LINE L1 1812 2047 -4983 773 189 11 85 chr4 156769421 156769543 -27519119 + L1MA9 LINE L1 6156 6286 -904 2041 140 0 0 chr4 156769543 156769858 -27518804 - AluSx SINE Alu 0 315 1 773 189 11 85 chr4 156769858 156770039 -27518623 + L1MA9 LINE L1 6286 6442 -748 450 143 29 0 chr4 156770042 156770147 -27518515 + (TA)n Simple_repeat Simple_repeat 1 108 0 269 115 0 19 chr4 156770310 156770362 -27518300 + (GGGA)n Simple_repeat Simple_repeat 2 52 0 2189 107 10 3 chr4 156771203 156771512 -27517150 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr4 156772374 156772396 -27516266 + AT_rich Low_complexity Low_complexity 1 22 0 280 289 11 33 chr4 156774436 156774526 -27514136 - L2 LINE L2 0 3272 3185 372 194 48 0 chr4 156776835 156776959 -27511703 + (TA)n Simple_repeat Simple_repeat 1 130 0 2161 187 43 17 chr4 156776966 156777431 -27511231 + L1MA9 LINE L1 6419 6895 -377 21 0 0 0 chr4 156777947 156777968 -27510694 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr4 156778351 156778377 -27510285 + AT_rich Low_complexity Low_complexity 1 26 0 236 299 104 55 chr4 156778546 156778710 -27509952 + MLT1H LTR MaLR 3 174 -375 375 105 0 0 chr4 156779307 156779364 -27509298 + (CA)n Simple_repeat Simple_repeat 2 58 0 12206 184 24 4 chr4 156780002 156781846 -27506816 + L1PB1 LINE L1 2510 4459 -1692 387 0 0 0 chr4 156781846 156781889 -27506773 + (CA)n Simple_repeat Simple_repeat 2 44 0 12206 184 24 4 chr4 156781889 156783583 -27505079 + L1PB1 LINE L1 4459 6118 -33 260 253 0 32 chr4 156784544 156784639 -27504023 + L1M4 LINE L1 5355 5446 -675 590 288 75 48 chr4 156784815 156785186 -27503476 + MLT1J1 LTR MaLR 49 429 -17 221 250 0 0 chr4 156785550 156785594 -27503068 + polypurine Low_complexity Low_complexity 3 46 0 209 363 9 44 chr4 156786842 156786955 -27501707 + L2 LINE L2 3111 3219 -53 267 333 109 14 chr4 156787011 156787149 -27501513 - L2 LINE L2 0 3313 3163 3736 76 49 0 chr4 156787533 156788044 -27500618 - L1PA11 LINE L1 -12 6162 5627 24 0 0 0 chr4 156788243 156788267 -27500395 + AT_rich Low_complexity Low_complexity 1 24 0 265 311 76 32 chr4 156788406 156788735 -27499927 + L1M4 LINE L1 5512 5866 -298 407 247 0 0 chr4 156789204 156789289 -27499373 + MER81 DNA DNA 30 114 0 22 0 0 0 chr4 156789717 156789739 -27498923 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr4 156789872 156789903 -27498759 + AT_rich Low_complexity Low_complexity 1 31 0 243 317 130 16 chr4 156791478 156791601 -27497061 - L2 LINE L2 -1 3312 3176 190 375 0 0 chr4 156792386 156792450 -27496212 + L2 LINE L2 3249 3312 -1 336 270 20 53 chr4 156792620 156792772 -27495890 - L2 LINE L2 0 3313 3167 276 182 18 0 chr4 156792876 156792931 -27495731 + L1ME1 LINE L1 114 169 -6227 6841 57 14 5 chr4 156792951 156794523 -27494139 + L1PA7 LINE L1 4574 6151 -3 429 348 48 24 chr4 156794607 156794983 -27493679 + L1ME1 LINE L1 331 715 -5681 1126 252 70 77 chr4 156795046 156795502 -27493160 - MLT1E LTR MaLR -140 453 1 902 289 64 17 chr4 156795511 156796165 -27492497 + L1ME1 LINE L1 728 1262 -4955 2411 253 93 10 chr4 156796177 156796816 -27491846 + L1ME1 LINE L1 5264 5999 -236 414 0 0 0 chr4 156796816 156796862 -27491800 + (CA)n Simple_repeat Simple_repeat 1 46 0 2411 253 93 10 chr4 156796862 156797119 -27491543 + L1ME1 LINE L1 5999 6233 -2 484 253 167 30 chr4 156797214 156797546 -27491116 - L2 LINE L2 -171 3142 2748 2942 264 56 29 chr4 156797546 156797851 -27490811 + L1MB8 LINE L1 5147 5443 -735 2190 113 0 0 chr4 156797851 156798142 -27490520 + AluSx SINE Alu 17 307 -5 2942 264 56 29 chr4 156798142 156798843 -27489819 + L1MB8 LINE L1 5443 6177 -1 202 216 0 54 chr4 156799149 156799223 -27489439 + T-rich Low_complexity Low_complexity 4 73 0 5410 162 38 22 chr4 156799314 156800349 -27488313 + L1PB3 LINE L1 4729 5803 -351 180 0 0 0 chr4 156800349 156800369 -27488293 + (TA)n Simple_repeat Simple_repeat 1 20 0 5410 162 38 22 chr4 156800369 156800718 -27487944 + L1PB3 LINE L1 5803 6145 -9 426 213 0 0 chr4 156800719 156800813 -27487849 + (CATA)n Simple_repeat Simple_repeat 2 95 0 374 161 58 11 chr4 156801050 156801137 -27487525 - Charlie7 DNA MER1_type -683 1929 1839 233 247 31 82 chr4 156802929 156803026 -27485636 - MIR3 SINE MIR 0 208 117 260 322 17 21 chr4 156803269 156803410 -27485252 - MIR SINE MIR -47 161 26 503 329 35 4 chr4 156804656 156804887 -27483775 - MIR SINE MIR -5 257 20 2114 123 3 0 chr4 156805543 156805836 -27482826 - AluSq SINE Alu -19 294 1 383 304 20 0 chr4 156805847 156805949 -27482713 - MIR3 SINE MIR -54 154 51 799 336 88 18 chr4 156807288 156807863 -27480799 - L2 LINE L2 0 3313 2704 530 298 57 67 chr4 156808249 156808621 -27480041 + L1MEc LINE L1 2004 2371 -4025 226 256 8 26 chr4 156808626 156808743 -27479919 + A-rich Low_complexity Low_complexity 5 119 0 3461 38 36 0 chr4 156808747 156809168 -27479494 - L1PA8 LINE L1 -199 5973 5538 581 260 61 37 chr4 156809253 156809499 -27479163 + LTR50 LTR ERVL 3 254 -541 249 291 94 0 chr4 156809533 156809650 -27479012 + LTR50 LTR ERVL 355 482 -313 400 279 87 22 chr4 156809708 156809891 -27478771 + LTR33A LTR ERVL 329 523 0 685 313 55 0 chr4 156809891 156810198 -27478464 + L1MEc LINE L1 2367 2690 -3525 551 244 202 14 chr4 156810215 156810502 -27478160 - L2 LINE L2 -649 2665 2325 2400 89 0 0 chr4 156814133 156814436 -27474226 - AluSx SINE Alu -7 305 3 408 109 0 0 chr4 156816462 156816526 -27472136 - AluSq SINE Alu -12 301 238 723 142 8 15 chr4 156816628 156816762 -27471900 + L1MA4 LINE L1 6162 6294 -6 4465 161 52 12 chr4 156817151 156817979 -27470683 + MER6 DNA MER2_type 2 862 -3 3329 77 73 4 chr4 156818526 156819022 -27469640 - L1PA13 LINE L1 -2 6161 5632 336 287 190 42 chr4 156819304 156819375 -27469287 - MIR SINE MIR -12 250 191 1772 118 55 116 chr4 156819375 156819773 -27468889 - THE1C LTR MaLR 0 375 2 336 287 190 42 chr4 156819773 156819917 -27468745 - MIR SINE MIR -71 191 3 269 295 32 0 chr4 156819970 156820065 -27468597 - MIR SINE MIR -84 178 81 490 114 91 0 chr4 156820608 156820696 -27467966 + MER4A LTR ERV1 3 98 -566 1613 127 165 70 chr4 156820696 156821065 -27467597 + MER4A LTR ERV1 261 664 0 2387 65 3 0 chr4 156822358 156822649 -27466013 - AluY SINE Alu -19 292 1 491 276 107 2 chr4 156824315 156824468 -27464194 + MIR SINE MIR 42 206 -56 811 207 40 120 chr4 156824586 156824800 -27463862 + MLT1E2 LTR MaLR 351 581 -45 311 0 26 0 chr4 156824800 156824839 -27463823 + (TTTG)n Simple_repeat Simple_repeat 3 42 0 811 207 40 120 chr4 156824839 156824855 -27463807 + MLT1E2 LTR MaLR 581 597 -29 1808 91 0 0 chr4 156824855 156825096 -27463566 - AluSq SINE Alu -72 241 1 811 207 40 120 chr4 156825096 156825164 -27463498 + MLT1E2 LTR MaLR 597 626 0 381 337 135 38 chr4 156825402 156825898 -27462764 + L1MC4a LINE L1 5293 5836 -1972 388 331 76 0 chr4 156825958 156826142 -27462520 + MIR SINE MIR 65 262 0 265 358 128 11 chr4 156826686 156826865 -27461797 - MIR3 SINE MIR -6 202 3 1888 235 84 20 chr4 156827673 156828579 -27460083 + MER63C DNA MER1_type 57 931 0 1933 101 0 54 chr4 156829756 156830069 -27458593 - AluSx SINE Alu 0 321 24 192 420 11 0 chr4 156830155 156830243 -27458419 + L2 LINE L2 2989 3077 -195 1163 188 9 4 chr4 156830581 156831017 -27457645 - MLT1D LTR MaLR -2 503 1 1587 178 18 0 chr4 156832191 156832477 -27456185 + Tigger3b DNA MER2_type 1 291 -940 670 228 0 80 chr4 156832480 156832704 -27455958 + MER52A LTR ERV1 1 206 -1549 7185 105 2 10 chr4 156832804 156833935 -27454727 + L1P LINE L1 1844 2965 -3181 6988 31 0 2 chr4 156834036 156834865 -27453797 + L1PA5 LINE L1 5326 6152 -2 1427 78 5 0 chr4 156834869 156835075 -27453587 + LTR19A LTR ERV1 280 486 0 4647 158 31 20 chr4 156835559 156836803 -27451859 + MER52A LTR ERV1 570 1755 0 4627 105 52 22 chr4 156836803 156837221 -27451441 + Tigger3b DNA MER2_type 291 695 -2333 1757 162 17 3 chr4 156837221 156837511 -27451151 + AluJb SINE Alu 1 294 -18 4627 105 52 22 chr4 156837511 156837899 -27450763 + Tigger3b DNA MER2_type 695 1121 -110 2817 69 0 0 chr4 156837899 156838263 -27450399 - THE1B LTR MaLR 0 364 1 659 168 9 0 chr4 156838264 156838377 -27450285 + Tigger3b DNA MER2_type 1119 1232 0 13402 98 14 1 chr4 156839174 156841913 -27446749 - L1PA7 LINE L1 -8 6461 3702 11452 110 18 27 chr4 156842013 156844080 -27444582 - L1PA7 LINE L1 -4376 2085 10 2182 126 3 7 chr4 156844148 156844458 -27444204 + AluSq SINE Alu 1 309 -4 192 322 0 0 chr4 156844458 156844517 -27444145 + L3b LINE CR1 1438 1496 -87 2252 101 7 0 chr4 156844922 156845218 -27443444 + AluSx SINE Alu 1 298 -14 458 187 245 7 chr4 156846510 156846665 -27441997 + MER67C LTR ERV1 145 336 -374 515 286 85 20 chr4 156846816 156847015 -27441647 - MIR SINE MIR -48 214 3 380 317 96 15 chr4 156847189 156847388 -27441274 + MIR SINE MIR 45 259 -3 2321 106 42 33 chr4 156847602 156847962 -27440700 - THE1B LTR MaLR 0 364 2 1738 167 38 3 chr4 156848105 156848393 -27440269 - AluSx SINE Alu -10 302 5 262 214 12 107 chr4 156848923 156849007 -27439655 + MER5A DNA MER1_type 106 181 -8 782 221 119 47 chr4 156849121 156849374 -27439288 - MLT2B1 LTR ERVL -57 463 193 318 94 19 0 chr4 156849347 156849400 -27439262 + MSTC LTR MaLR 375 428 0 * 1916 127 4 0 chr4 156849444 156849703 -27438959 - AluSg SINE Alu -14 296 37 1814 201 0 0 chr4 156851088 156851392 -27437270 - AluJo SINE Alu -8 304 1 538 304 27 0 chr4 156852191 156852339 -27436323 + MIR SINE MIR 24 175 -87 386 262 112 4 chr4 156852474 156852613 -27436049 - MLT1A2 LTR MaLR -214 151 1 336 313 21 10 chr4 156853095 156853191 -27435471 - L2 LINE L2 -5 3267 3171 267 361 74 20 chr4 156853198 156853400 -27435262 + L2 LINE L2 1850 2062 -1252 294 29 0 0 chr4 156853580 156853615 -27435047 + (TC)n Simple_repeat Simple_repeat 1 35 0 267 354 36 26 chr4 156853663 156853855 -27434807 + L2 LINE L2 2368 2561 -753 1081 263 71 23 chr4 156854043 156854397 -27434265 + MLT1A2 LTR MaLR 4 374 0 1985 120 8 48 chr4 156854877 156855228 -27433434 - MER1B DNA MER1_type 0 337 1 40153 36 27 2 chr4 156855916 156861912 -27426750 + L1PA3 LINE L1 2 6151 -4 642 319 106 4 chr4 156862122 156862357 -27426305 - MIR SINE MIR 0 262 4 455 359 14 29 chr4 156863001 156863210 -27425452 - L2 LINE L2 -557 2757 2552 1125 181 4 32 chr4 156863507 156863755 -27424907 - MER31A LTR ERV1 0 485 245 2027 196 114 72 chr4 156863761 156864079 -27424583 + LTR19C LTR ERV1 4 307 -472 2264 98 0 19 chr4 156864079 156864394 -27424268 + AluSc SINE Alu 1 309 0 2027 196 114 72 chr4 156864394 156864811 -27423851 + LTR19C LTR ERV1 307 779 0 1455 117 27 0 chr4 156864817 156865040 -27423622 - MER31A LTR ERV1 -248 237 9 210 345 35 0 chr4 156865065 156865152 -27423510 - L3b LINE CR1 -179 1404 1315 387 318 9 0 chr4 156865615 156865725 -27422937 + L2 LINE L2 3200 3310 -3 261 0 0 0 chr4 156866432 156866461 -27422201 + (TA)n Simple_repeat Simple_repeat 2 30 0 27 29 0 0 chr4 156866535 156866569 -27422093 + AT_rich Low_complexity Low_complexity 1 34 0 2493 129 27 52 chr4 156866676 156867282 -27421380 + MER4B LTR ERV1 1 779 0 24 32 0 0 chr4 156867710 156867741 -27420921 + AT_rich Low_complexity Low_complexity 1 31 0 2767 197 34 6 chr4 156867821 156868350 -27420312 + LTR35 LTR ERV1 73 616 -2 381 272 115 47 chr4 156868390 156868581 -27420081 - L2 LINE L2 -94 3219 3016 1289 115 0 0 chr4 156868593 156868775 -27419887 + AluSg/x SINE Alu 130 311 -1 204 341 24 12 chr4 156868788 156868873 -27419789 - L2 LINE L2 -329 2984 2899 24 0 0 0 chr4 156869044 156869068 -27419594 + AT_rich Low_complexity Low_complexity 1 24 0 266 128 0 0 chr4 156869357 156869396 -27419266 - MLT1K LTR MaLR -368 220 182 1096 175 54 21 chr4 156869521 156869761 -27418901 + LTR19A LTR ERV1 1 248 -238 40651 68 3 2 chr4 156869761 156875101 -27413561 + L1P LINE L1 22 5369 -777 23 33 0 0 chr4 156875267 156875297 -27413365 + AT_rich Low_complexity Low_complexity 1 30 0 235 388 61 0 chr4 156877176 156877274 -27411388 + MIR SINE MIR 3 106 -156 8473 229 41 25 chr4 156877906 156881756 -27406906 + L1M3b LINE L1 2049 6340 -1225 15351 151 61 12 chr4 156881767 156884376 -27404286 + L1PBa LINE L1 3 2737 -4126 536 236 25 59 chr4 156884402 156884605 -27404057 + LTR55 LTR ERV 258 453 -95 3966 201 53 30 chr4 156885744 156886914 -27401748 - L1MB3 LINE L1 -2 6181 4985 3052 80 3 159 chr4 156887158 156887773 -27400889 - THE1C-int LTR MaLR -1061 519 1 367 96 19 0 chr4 156887773 156887825 -27400837 - THE1C LTR MaLR 0 375 323 312 303 118 7 chr4 156888212 156888364 -27400298 + L1MC4a LINE L1 5723 5891 -1917 818 238 11 11 chr4 156888380 156888569 -27400093 + MER5A DNA MER1_type 1 189 0 2024 237 39 37 chr4 156889613 156890175 -27398487 + MLT1F1 LTR MaLR 1 563 -4 1960 156 0 0 chr4 156890183 156890472 -27398190 + AluSx SINE Alu 1 289 -23 6544 72 14 3 chr4 156890479 156891436 -27397226 + L1PA7 LINE L1 5197 6163 0 442 304 59 56 chr4 156891595 156891865 -27396797 + MLT1K LTR MaLR 156 426 -162 1359 292 125 23 chr4 156892039 156892742 -27395920 + L1ME1 LINE L1 23 797 -5599 3277 251 69 22 chr4 156892743 156894513 -27394149 + L1ME1 LINE L1 4166 6042 -193 2348 193 17 5 chr4 156894513 156894932 -27393730 - MSTB LTR MaLR 0 426 3 3277 251 69 22 chr4 156894932 156895131 -27393531 + L1ME1 LINE L1 6042 6230 -5 12580 191 40 24 chr4 156895257 156897220 -27391442 + L1M3e LINE L1 10 1939 -5167 1506 196 18 4 chr4 156897220 156897501 -27391161 + AluJb SINE Alu 1 285 -27 12580 191 40 24 chr4 156897501 156898924 -27389738 + L1M3e LINE L1 1939 3337 -3769 1904 164 3 7 chr4 156898924 156899234 -27389428 + AluJb SINE Alu 2 310 -2 12580 191 40 24 chr4 156899234 156901306 -27387356 + L1M3e LINE L1 3337 6327 -779 282 87 0 0 chr4 156901856 156901902 -27386760 + (GA)n Simple_repeat Simple_repeat 1 46 0 2228 132 102 13 chr4 156901926 156902319 -27386343 + MSTA LTR MaLR 1 428 0 2292 71 44 0 chr4 156902720 156903017 -27385645 - AluY SINE Alu -1 310 1 839 280 16 20 chr4 156903963 156904213 -27384449 - MIR SINE MIR -2 260 12 239 376 0 20 chr4 156904930 156905031 -27383631 - MER5A DNA MER1_type 0 189 91 428 255 229 11 chr4 156905568 156905756 -27382906 + MIR SINE MIR 1 229 -33 681 203 26 98 chr4 156905895 156905947 -27382715 + MER31B LTR ERV1 1 55 -411 2206 123 3 0 chr4 156905947 156906256 -27382406 - AluSx SINE Alu -2 310 1 681 203 26 98 chr4 156906256 156906614 -27382048 + MER31B LTR ERV1 55 463 -3 23 33 0 0 chr4 156907195 156907225 -27381437 + AT_rich Low_complexity Low_complexity 1 30 0 629 246 166 15 chr4 156907965 156908164 -27380498 - MER67D LTR ERV1 -4 510 282 285 143 0 0 chr4 156908980 156909022 -27379640 - MIR SINE MIR -10 252 211 2502 27 0 0 chr4 156909885 156910177 -27378485 - L1PA3 LINE L1 -5 6150 5859 402 121 0 15 chr4 156910177 156910243 -27378419 + L1PA2 LINE L1 5831 5895 -260 529 272 111 6 chr4 156910537 156910717 -27377945 + L2 LINE L2 2115 2313 -1001 250 146 21 0 chr4 156910721 156910769 -27377893 - L2 LINE L2 -4 3309 3261 1970 152 10 76 chr4 156911428 156911579 -27377083 - MLT1B LTR MaLR -10 380 221 1883 122 12 66 chr4 156911579 156911899 -27376763 - AluSx SINE Alu -9 303 1 1970 152 10 76 chr4 156911899 156912154 -27376508 - MLT1B LTR MaLR -169 221 1 42524 36 22 1 chr4 156912203 156918212 -27370450 + L1PA2 LINE L1 4 6145 -10 297 24 24 0 chr4 156918212 156918253 -27370409 + (TAAA)n Simple_repeat Simple_repeat 3 160 0 42524 36 22 1 chr4 156918253 156918265 -27370397 + L1PA2 LINE L1 6145 6155 0 1394 274 67 3 chr4 156918265 156918638 -27370024 + LTR16A LTR ERVL 53 449 -1 368 220 20 88 chr4 156919989 156920254 -27368408 - MER5C DNA MER1_type -3 321 3 24 32 0 0 chr4 156921639 156921670 -27366992 + AT_rich Low_complexity Low_complexity 1 31 0 631 144 27 9 chr4 156922439 156922550 -27366112 - THE1C LTR MaLR -127 248 136 1396 157 106 4 chr4 156922550 156922805 -27365857 - MLT2A2 LTR ERVL -172 281 1 9032 205 71 8 chr4 156922805 156926722 -27361940 - L1M4 LINE L1 -2095 4287 19 288 200 0 0 chr4 156926730 156926780 -27361882 - MIR SINE MIR -105 157 108 1402 157 29 125 chr4 156927136 156927481 -27361181 + AluJo SINE Alu 1 312 0 225 0 0 0 chr4 156927695 156927720 -27360942 + (CA)n Simple_repeat Simple_repeat 2 26 0 186 43 0 0 chr4 156928500 156928523 -27360139 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr4 156930255 156930276 -27358386 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 156930994 156931015 -27357647 + AT_rich Low_complexity Low_complexity 1 21 0 5014 199 58 25 chr4 156931027 156933275 -27355387 - L1MC2 LINE L1 -9 6753 4433 3607 212 50 51 chr4 156933272 156934029 -27354633 - L1MC2 LINE L1 -4600 1964 1207 * 1498 227 35 22 chr4 156934029 156934395 -27354267 - MLT1A2 LTR MaLR 0 374 4 3607 212 50 51 chr4 156934395 156935525 -27353137 - L1MC2 LINE L1 -5357 1207 1 261 299 158 34 chr4 156936168 156936345 -27352317 - MIR SINE MIR -34 228 30 23 54 0 0 chr4 156936589 156936626 -27352036 + AT_rich Low_complexity Low_complexity 1 37 0 327 182 0 0 chr4 156937557 156937612 -27351050 + Tigger5 DNA MER2_type 1 55 -2268 303 219 14 14 chr4 156937581 156937654 -27351008 + Tigger5 DNA MER2_type 2251 2323 0 * 519 171 38 9 chr4 156937690 156937795 -27350867 + Tigger5 DNA MER2_type 2215 2322 -1 515 275 67 7 chr4 156937814 156937963 -27350699 - MIR SINE MIR -89 173 16 2543 48 0 3 chr4 156938013 156938322 -27350340 + AluY SINE Alu 1 308 -3 21 57 0 0 chr4 156939065 156939100 -27349562 + AT_rich Low_complexity Low_complexity 1 35 0 627 251 84 5 chr4 156940081 156940272 -27348390 - MER21B LTR ERV1 -51 812 607 1167 186 103 89 chr4 156940353 156940854 -27347808 - LTR1B LTR ERV1 -37 983 342 763 234 8 55 chr4 156940870 156941105 -27347557 - LTR1 LTR ERV1 -561 224 1 2581 218 56 52 chr4 156941105 156941799 -27346863 - HUERS-P2 LTR ERV1 -1 3087 2391 1570 237 12 9 chr4 156941899 156942232 -27346430 - MER21B LTR ERV1 -517 346 13 27 73 0 0 chr4 156942463 156942518 -27346144 + AT_rich Low_complexity Low_complexity 1 55 0 2572 196 122 28 chr4 156942623 156943326 -27345336 + LTR48 LTR ERV1 7 775 -12 210 105 0 0 chr4 156943743 156943781 -27344881 + (CA)n Simple_repeat Simple_repeat 1 38 0 644 297 55 36 chr4 156944217 156944912 -27343750 + L1ME LINE L1 4943 5656 -506 470 226 90 6 chr4 156944919 156945096 -27343566 - Charlie2 DNA MER1_type -8 2854 2663 3904 230 62 26 chr4 156945099 156946685 -27341977 + L1M1 LINE L1 20 2324 -5241 4461 151 44 9 chr4 156946687 156947503 -27341159 + L1MA4 LINE L1 5442 6286 -14 552 180 43 29 chr4 156947526 156947665 -27340997 - Charlie2 DNA MER1_type -243 2619 2479 2534 231 63 52 chr4 156947744 156949230 -27339432 + L1MDa LINE L1 3 1742 -4798 1701 146 56 61 chr4 156949240 156949617 -27339045 + THE1C LTR MaLR 1 375 0 8936 145 12 53 chr4 156949619 156950422 -27338240 + THE1C-int LTR MaLR 3 706 -874 2131 130 0 3 chr4 156950422 156950722 -27337940 + AluSg SINE Alu 3 301 -9 8936 145 12 53 chr4 156950722 156951563 -27337099 + THE1C-int LTR MaLR 706 1580 0 1813 162 52 41 chr4 156951563 156951927 -27336735 + THE1C LTR MaLR 1 368 -7 3021 195 52 12 chr4 156951932 156952677 -27335985 + L1MDa LINE L1 1745 2519 -4021 2179 128 23 47 chr4 156952677 156953034 -27335628 - THE1C LTR MaLR 0 375 26 2053 133 51 20 chr4 156953034 156953386 -27335276 + THE1B LTR MaLR 2 364 0 2179 128 23 47 chr4 156953386 156953412 -27335250 - THE1C LTR MaLR -349 26 1 573 175 56 0 chr4 156953412 156953538 -27335124 + L1MDa LINE L1 2515 2647 -3893 * 3574 151 2 10 chr4 156953534 156954132 -27334530 + L1PA15 LINE L1 5551 6143 -22 30 0 0 0 chr4 156954136 156954166 -27334496 + AT_rich Low_complexity Low_complexity 1 30 0 1047 252 84 38 chr4 156954194 156954425 -27334237 + L1MDa LINE L1 2631 2850 -3690 3617 144 55 18 chr4 156954425 156955141 -27333521 + L1MA8 LINE L1 5547 6288 -3 1047 252 84 38 chr4 156955141 156955232 -27333430 + L1MDa LINE L1 2850 2935 -3605 2682 164 22 69 chr4 156955232 156955813 -27332849 - MLT2B3 LTR ERVL 0 554 1 1047 252 84 38 chr4 156955813 156955966 -27332696 + L1MDa LINE L1 2935 3129 -3411 793 242 54 85 chr4 156956051 156956382 -27332280 - L1MCc LINE L1 -5144 1279 959 1717 100 8 24 chr4 156956533 156956784 -27331878 + AluSx SINE Alu 1 247 -65 3197 174 84 5 chr4 156958063 156958684 -27329978 - LTR51 LTR ERV1 -1 670 1 989 221 67 76 chr4 156958730 156959087 -27329575 - MER39 LTR ERV1 -23 684 331 24 0 0 0 chr4 156959088 156959112 -27329550 + AT_rich Low_complexity Low_complexity 1 24 0 2108 81 0 11 chr4 156959112 156959395 -27329267 - AluY SINE Alu -31 280 1 325 208 202 23 chr4 156959413 156959546 -27329116 - MER34 LTR ERV1 -420 122 4 290 253 13 13 chr4 156959783 156959858 -27328804 - MLT1K LTR MaLR 0 588 514 485 174 10 0 chr4 156959946 156960044 -27328618 + (CATATA)n Simple_repeat Simple_repeat 3 101 0 232 143 0 114 chr4 156960044 156960114 -27328548 + LTR66 LTR ERVL 398 459 -151 2708 148 40 11 chr4 156960228 156960682 -27327980 - LTR24 LTR ERV1 0 467 1 313 300 88 40 chr4 156963677 156963950 -27324712 + L1MC/D LINE L1 5028 5313 -833 593 304 58 54 chr4 156963956 156964440 -27324222 + L1MC/D LINE L1 5320 5805 -2003 183 153 14 42 chr4 156964441 156964513 -27324149 + (TATAA)n Simple_repeat Simple_repeat 5 74 0 2303 88 7 0 chr4 156964663 156964958 -27323704 + AluSp SINE Alu 1 297 -16 189 0 0 0 chr4 156965074 156965095 -27323567 + (A)n Simple_repeat Simple_repeat 1 21 0 1460 191 75 26 chr4 156965186 156965532 -27323130 + MLT1A1 LTR MaLR 1 363 -2 1355 193 45 3 chr4 156968456 156968767 -27319895 + MER33 DNA MER1_type 1 324 0 924 229 13 31 chr4 156969562 156969789 -27318873 - MIR SINE MIR -2 260 38 420 279 168 10 chr4 156969807 156970015 -27318647 - MIR SINE MIR -11 251 11 2417 99 69 32 chr4 156970196 156970630 -27318032 - LTR7 LTR ERV1 0 450 1 822 221 88 74 chr4 156972928 156973370 -27315292 + MER39 LTR ERV1 135 540 -2 278 125 18 0 chr4 156973636 156973692 -27314970 + LTR49-int LTR ERV1 1320 1376 -4955 465 215 50 105 chr4 156973884 156974103 -27314559 + LTR49-int LTR ERV1 1377 1583 -4748 1056 196 141 40 chr4 156974755 156975102 -27313560 + LTR49-int LTR ERV1 883 1264 -3672 252 268 0 0 chr4 156975102 156975158 -27313504 + MER34 LTR ERV1 373 428 -114 685 200 7 48 chr4 156975163 156975308 -27313354 + AluJb SINE Alu 131 269 -43 362 215 43 0 chr4 156975308 156975401 -27313261 + MER34 LTR ERV1 446 542 0 506 276 35 0 chr4 156975580 156975725 -27312937 - MIR SINE MIR -2 260 111 3063 158 52 78 chr4 156975938 156976078 -27312584 + MER44D DNA MER2_type 9 151 -2436 2179 106 3 10 chr4 156976078 156976381 -27312281 - AluSg SINE Alu -9 301 1 3063 158 52 78 chr4 156976381 156976954 -27311708 + MER44D DNA MER2_type 151 703 -2 743 297 48 17 chr4 156977036 156977473 -27311189 + L1ME4a LINE L1 5386 5848 -273 2058 142 153 5 chr4 156977541 156977914 -27310748 + MSTA LTR MaLR 1 428 0 6473 171 169 8 chr4 156977915 156979337 -27309325 + MSTA-int LTR MaLR 2 1651 0 1896 149 165 5 chr4 156979337 156979706 -27308956 + MSTA LTR MaLR 1 428 0 189 0 0 0 chr4 156980066 156980087 -27308575 + (A)n Simple_repeat Simple_repeat 1 21 0 2386 97 7 3 chr4 156980509 156980819 -27307843 - AluSp SINE Alu -2 311 1 2311 97 7 0 chr4 156981133 156981431 -27307231 + AluSp SINE Alu 2 301 -12 282 365 68 14 chr4 156982679 156982827 -27305835 - L2 LINE L2 -4 3268 3113 377 376 41 6 chr4 156983536 156983706 -27304956 + MIR3 SINE MIR 19 194 -14 219 213 0 0 chr4 156983807 156983820 -27304842 + (CATATA)n Simple_repeat Simple_repeat 6 18 -34 207 0 0 0 chr4 156983820 156983843 -27304819 + (TG)n Simple_repeat Simple_repeat 2 24 0 219 213 0 0 chr4 156983843 156983876 -27304786 + (CATATA)n Simple_repeat Simple_repeat 17 52 0 2134 240 95 41 chr4 156983894 156984578 -27304084 + L1MC4 LINE L1 6771 7516 -526 2143 132 0 7 chr4 156984578 156984888 -27303774 + AluSx SINE Alu 1 308 -4 2134 240 95 41 chr4 156984888 156985099 -27303563 + L1MC4 LINE L1 7516 7714 -328 * 6379 159 30 40 chr4 156985082 156986398 -27302264 + L1MA4 LINE L1 3991 5319 -981 1548 201 25 3 chr4 156986398 156986514 -27302148 + AluJo SINE Alu 1 113 -199 288 0 0 0 chr4 156986514 156986546 -27302116 + (CA)n Simple_repeat Simple_repeat 1 32 0 1548 201 25 3 chr4 156986546 156986713 -27301949 + AluJo SINE Alu 113 290 -22 6379 159 30 40 chr4 156986713 156986736 -27301926 + L1MA4 LINE L1 5319 5341 -959 1942 146 0 26 chr4 156986736 156987038 -27301624 + AluSx SINE Alu 1 294 -18 6379 159 30 40 chr4 156987038 156987812 -27300850 + L1MA4 LINE L1 5341 6098 -202 572 71 0 12 chr4 156987812 156987890 -27300772 + L1MA4 LINE L1 6214 6297 -3 662 225 47 6 chr4 156987951 156988120 -27300542 + L1MCa LINE L1 34 209 -6217 2111 117 10 13 chr4 156988485 156988785 -27299877 + AluSg SINE Alu 5 303 -7 3315 84 32 0 chr4 156989091 156989530 -27299132 + MLT2A2 LTR ERVL 1 453 0 21 0 0 0 chr4 156993004 156993025 -27295637 + AT_rich Low_complexity Low_complexity 1 21 0 20162 147 12 7 chr4 156993838 156998414 -27290248 + L1PA11 LINE L1 1568 6174 0 328 253 32 0 chr4 157001182 157001277 -27287385 + L1MC4 LINE L1 7945 8042 0 2041 102 0 41 chr4 157001481 157001797 -27286865 + AluSc SINE Alu 5 308 0 183 314 149 8 chr4 157002236 157002357 -27286305 + MIR SINE MIR 10 147 -115 301 231 0 0 chr4 157003468 157003533 -27285129 + MLT1A1 LTR MaLR 301 365 0 432 183 231 0 chr4 157003651 157003755 -27284907 + MLT2B3 LTR ERVL 1 128 -426 1653 223 43 21 chr4 157003757 157004133 -27284529 + MLT2B3 LTR ERVL 48 431 -123 1519 174 8 0 chr4 157004133 157004397 -27284265 - THE1B LTR MaLR 0 364 99 877 140 0 20 chr4 157004497 157004647 -27284015 - THE1B LTR MaLR -217 147 1 474 186 39 39 chr4 157004647 157004749 -27283913 + MLT2B3 LTR ERVL 381 516 -38 262 100 33 0 chr4 157004752 157004812 -27283850 + (TA)n Simple_repeat Simple_repeat 2 63 0 9798 167 17 30 chr4 157004844 157005309 -27283353 + ERVL LTR ERVL 3454 3923 -1841 4210 117 11 59 chr4 157005309 157006035 -27282627 + LTR8 LTR ERV1 1 691 0 9798 167 17 30 chr4 157006035 157007472 -27281190 + ERVL LTR ERVL 3923 5332 -432 5249 108 16 4 chr4 157007473 157008275 -27280387 + MER4D LTR ERV1 1 812 -91 2435 181 16 83 chr4 157008293 157008874 -27279788 + MLT2B3 LTR ERVL 1 542 -12 598 149 45 65 chr4 157009641 157009687 -27278975 - MER7C DNA MER2_type -2843 185 140 7347 32 11 2 chr4 157009687 157011359 -27277303 + L1PA5 LINE L1 4472 6154 0 598 149 45 65 chr4 157011359 157011466 -27277196 - MER7C DNA MER2_type -2888 140 35 2037 116 3 10 chr4 157012275 157012576 -27276086 + AluSp SINE Alu 2 300 -13 1134 251 35 10 chr4 157012753 157013064 -27275598 + MLT1F LTR MaLR 197 515 -27 399 41 0 0 chr4 157013064 157013113 -27275549 + (TG)n Simple_repeat Simple_repeat 2 50 0 1670 143 7 53 chr4 157013113 157013413 -27275249 - AluJo SINE Alu -26 286 1 738 165 31 0 chr4 157015398 157015525 -27273137 + FLAM_A SINE Alu 1 131 -2 931 209 130 0 chr4 157015715 157015969 -27272693 - MLT1A1 LTR MaLR -12 353 67 1125 130 88 23 chr4 157015969 157016184 -27272478 - MER46A DNA MER2_type -7 229 1 297 167 0 56 chr4 157016186 157016258 -27272404 - MLT1A1 LTR MaLR -306 68 1 801 136 8 0 chr4 157017538 157017663 -27270999 + MIR SINE MIR 9 134 -128 255 214 186 0 chr4 157017812 157017882 -27270780 + MIR3 SINE MIR 120 202 -6 423 0 0 0 chr4 157019132 157019179 -27269483 + (CA)n Simple_repeat Simple_repeat 2 48 0 212 196 0 20 chr4 157019435 157019486 -27269176 + (CATATA)n Simple_repeat Simple_repeat 5 54 0 2291 85 3 3 chr4 157021386 157021679 -27266983 - AluSq SINE Alu -20 293 1 555 340 120 37 chr4 157021782 157022299 -27266363 - L3 LINE CR1 -27 1550 991 1599 189 120 17 chr4 157023592 157023951 -27264711 + MSTD LTR MaLR 1 396 0 1340 230 24 29 chr4 157023953 157024336 -27264326 + MSTD-int LTR MaLR 2 382 -1353 21 0 0 0 chr4 157024365 157024386 -27264276 + AT_rich Low_complexity Low_complexity 1 21 0 407 276 97 24 chr4 157025337 157025504 -27263158 + L1ME4a LINE L1 5487 5534 -587 2419 93 0 0 chr4 157025504 157025815 -27262847 + AluY SINE Alu 1 311 0 407 276 97 24 chr4 157025815 157025955 -27262707 + L1ME4a LINE L1 5534 5662 -459 264 238 57 19 chr4 157026186 157026291 -27262371 + L1ME4a LINE L1 5806 5914 -207 435 305 64 34 chr4 157026643 157026879 -27261783 - MIR SINE MIR -11 251 9 1030 266 124 84 chr4 157028774 157029563 -27259099 + L2 LINE L2 2486 3311 -2 29 0 0 0 chr4 157029612 157029641 -27259021 + AT_rich Low_complexity Low_complexity 1 29 0 2290 167 13 10 chr4 157029663 157030058 -27258604 + MSTD LTR MaLR 1 396 0 2403 76 0 25 chr4 157030151 157030468 -27258194 + AluY SINE Alu 1 309 -2 426 306 111 43 chr4 157030791 157031186 -27257476 + LTR16C LTR ERVL 55 476 -15 346 336 100 5 chr4 157031201 157031421 -27257241 + HERV16 LTR ERVL 2 242 -4754 536 328 78 31 chr4 157031940 157032300 -27256362 + HERV16 LTR ERVL 794 1170 -3826 918 340 32 22 chr4 157032710 157033348 -27255314 + HERV16 LTR ERVL 1688 2383 -2777 281 222 42 0 chr4 157033596 157033668 -27254994 + HERVL LTR ERVL 3852 3926 -1728 1269 205 152 31 chr4 157033669 157034050 -27254612 + MSTB1 LTR MaLR 1 427 -5 880 350 41 2 chr4 157034185 157034652 -27254010 + HERVL LTR ERVL 3953 4396 -1258 284 277 60 0 chr4 157035133 157035216 -27253446 + L2 LINE L2 3185 3272 0 1697 178 149 85 chr4 157035963 157036667 -27251995 + LTR1B LTR ERV1 8 745 -81 1417 249 59 58 chr4 157036848 157037644 -27251018 + L2 LINE L2 2504 3309 -4 207 253 40 27 chr4 157037863 157037938 -27250724 + L2 LINE L2 3196 3271 -1 650 134 9 0 chr4 157038541 157038653 -27250009 + L1MB1 LINE L1 6052 6164 -4 323 127 0 101 chr4 157039481 157039560 -27249102 + L1PA16 LINE L1 6089 6159 -7 353 387 71 0 chr4 157040880 157041048 -27247614 + MIR3 SINE MIR 16 195 -13 312 91 0 0 chr4 157041716 157041760 -27246902 + (CA)n Simple_repeat Simple_repeat 2 45 0 266 284 0 15 chr4 157041834 157041901 -27246761 + L1MA7 LINE L1 279 344 -6309 278 193 18 18 chr4 157041941 157041998 -27246664 + L1MA7 LINE L1 278 334 -6319 2274 169 11 38 chr4 157042283 157042757 -27245905 - L1PA16 LINE L1 -16 6150 5690 279 181 42 28 chr4 157042757 157042829 -27245833 + L1MA7 LINE L1 298 370 -6283 361 265 0 12 chr4 157042967 157043050 -27245612 + L1MA7 LINE L1 278 359 -6294 4872 262 52 21 chr4 157043084 157045725 -27242937 + L1MA7 LINE L1 935 3359 -3373 2369 183 21 6 chr4 157045718 157046242 -27242420 + L1MA7 LINE L1 5388 5919 -813 * 37774 72 6 8 chr4 157046239 157052383 -27236279 + L1PA5 LINE L1 22 6149 -5 4745 143 49 15 chr4 157052378 157053321 -27235341 + L1MA7 LINE L1 5903 6877 0 * 216 0 0 0 chr4 157053341 157053365 -27235297 + (CA)n Simple_repeat Simple_repeat 2 25 0 * 225 0 0 0 chr4 157053364 157053389 -27235273 + (TC)n Simple_repeat Simple_repeat 1 25 0 642 259 35 7 chr4 157053837 157053980 -27234682 + MIR3 SINE MIR 16 162 -46 2101 114 0 3 chr4 157054183 157054473 -27234189 - AluY SINE Alu -22 289 1 4667 30 6 6 chr4 157055118 157055642 -27233020 - SVA Other Other 0 1386 863 192 40 0 0 chr4 157055742 157055767 -27232895 + (T)n Simple_repeat Simple_repeat 1 25 0 5183 188 29 6 chr4 157055768 157056779 -27231883 + MST-int LTR MaLR 25 1058 -593 439 169 0 0 chr4 157056779 157056856 -27231806 - MSTB LTR MaLR -345 81 5 5282 236 43 28 chr4 157056858 157058205 -27230457 + MLT-int LTR MaLR 362 1729 -6 893 195 10 49 chr4 157058287 157058455 -27230207 + MSTD LTR MaLR 200 360 -36 1194 176 0 0 chr4 157058455 157058659 -27230003 - MER6B DNA MER2_type -4 206 3 893 195 10 49 chr4 157058659 157058695 -27229967 + MSTD LTR MaLR 360 396 0 474 290 40 0 chr4 157059012 157059136 -27229526 + MLT1H LTR MaLR 217 345 -204 677 226 0 15 chr4 157059172 157059305 -27229357 + FLAM_A SINE Alu 2 132 -1 467 252 63 123 chr4 157059893 157060226 -27228436 + MER102b DNA MER1_type 27 339 -2 201 246 49 33 chr4 157060228 157060289 -27228373 - MIR3 SINE MIR -48 160 99 1136 168 0 0 chr4 157061540 157061719 -27226943 + AluJb SINE Alu 134 312 0 301 392 56 58 chr4 157061778 157062240 -27226422 + L2 LINE L2 2812 3272 0 225 0 0 0 chr4 157063152 157063177 -27225485 + (TG)n Simple_repeat Simple_repeat 2 26 0 221 303 13 0 chr4 157063701 157063777 -27224885 + MIR SINE MIR 186 262 0 195 254 32 16 chr4 157064019 157064082 -27224580 - MIR SINE MIR -24 238 175 377 336 84 5 chr4 157064152 157064366 -27224296 - MIR SINE MIR -12 250 20 343 279 110 7 chr4 157066126 157066262 -27222400 + L2 LINE L2 1997 2146 -1168 2397 105 0 3 chr4 157066390 157066703 -27221959 - AluSx SINE Alu 0 312 1 2082 137 0 0 chr4 157066711 157066995 -27221667 - AluSx SINE Alu -27 285 2 5288 127 27 8 chr4 157067005 157068527 -27220135 + L1PA16 LINE L1 4615 6159 -7 793 246 43 160 chr4 157068837 157069099 -27219563 + L2 LINE L2 2212 2381 -933 876 220 12 0 chr4 157069099 157069267 -27219395 - FAM SINE Alu -5 170 1 793 246 43 160 chr4 157069267 157069540 -27219122 + L2 LINE L2 2381 2684 -630 897 253 21 9 chr4 157069756 157069989 -27218673 - MIR SINE MIR 0 262 27 375 188 59 64 chr4 157071267 157071395 -27217267 - L1MD3 LINE L1 -1 8041 7921 964 194 4 69 chr4 157074044 157074209 -27214453 - U3 snRNA snRNA 0 217 70 2237 169 0 0 chr4 157074209 157074546 -27214116 - MER1B DNA MER1_type 0 337 1 964 194 4 69 chr4 157074546 157074612 -27214050 - U3 snRNA snRNA -147 70 1 561 321 54 17 chr4 157076423 157076663 -27211999 + LTR16A LTR ERVL 1 249 -201 312 310 147 0 chr4 157076696 157076880 -27211782 + MERVL LTR ERVL 3298 3508 -1977 1140 311 49 78 chr4 157077247 157077536 -27211126 + MERVL LTR ERVL 3996 4292 -1472 237 33 0 0 chr4 157077536 157077566 -27211096 + (TC)n Simple_repeat Simple_repeat 2 31 0 2404 97 0 0 chr4 157077566 157077875 -27210787 - AluSq SINE Alu -4 309 1 1140 311 49 78 chr4 157077875 157078281 -27210381 + MERVL LTR ERVL 4290 4672 -1092 251 346 0 0 chr4 157078433 157078511 -27210151 + MERVL LTR ERVL 4915 4992 -772 496 229 89 133 chr4 157078513 157078645 -27210017 - MLT1F LTR MaLR -262 280 144 2175 130 0 6 chr4 157078645 157078960 -27209702 - AluSq SINE Alu 0 313 1 496 229 89 133 chr4 157078960 157079120 -27209542 - MLT1F LTR MaLR -398 144 1 551 272 67 106 chr4 157079120 157079506 -27209156 - MLT1F-int LTR MaLR 0 1371 1001 5440 87 12 19 chr4 157080003 157080736 -27207926 - L1PA11 LINE L1 -3 6171 5444 1973 176 65 29 chr4 157080736 157081247 -27207415 - MLT2A2 LTR ERVL -1 553 3 939 47 16 0 chr4 157081247 157081375 -27207287 - L1P4 LINE L1 -717 5451 5322 1341 102 6 0 chr4 157081375 157081551 -27207111 - AluY SINE Alu -12 299 123 1071 62 0 8 chr4 157081651 157081781 -27206881 - AluY SINE Alu -182 129 1 1094 150 8 21 chr4 157081781 157082015 -27206647 - L1P LINE L1 -818 5328 5098 3108 140 16 6 chr4 157082736 157083236 -27205426 - L1MB3 LINE L1 -7 6176 5672 1046 276 49 71 chr4 157083335 157083845 -27204817 - LTR33 LTR ERVL 0 521 23 24 0 0 0 chr4 157084400 157084424 -27204238 + AT_rich Low_complexity Low_complexity 1 24 0 261 0 0 0 chr4 157084430 157084459 -27204203 + (T)n Simple_repeat Simple_repeat 1 29 0 21 0 0 0 chr4 157085169 157085190 -27203472 + AT_rich Low_complexity Low_complexity 1 21 0 2234 116 0 0 chr4 157085197 157085498 -27203164 + AluSx SINE Alu 3 303 -9 187 314 124 0 chr4 157085844 157085949 -27202713 + L2 LINE L2 2890 3007 -265 562 283 100 40 chr4 157086013 157086313 -27202349 - MLT1I LTR MaLR -7 402 85 556 289 62 58 chr4 157086339 157086599 -27202063 + MIR SINE MIR 2 262 0 625 282 34 38 chr4 157088435 157088697 -27199965 - MIR SINE MIR -1 261 1 1500 169 68 27 chr4 157088896 157089192 -27199470 - AluJo SINE Alu -4 308 1 2000 96 44 0 chr4 157089522 157089792 -27198870 + AluSq SINE Alu 8 289 -24 200 184 20 0 chr4 157090379 157090428 -27198234 + (TA)n Simple_repeat Simple_repeat 2 51 0 183 156 0 0 chr4 157090455 157090487 -27198175 + (TA)n Simple_repeat Simple_repeat 1 32 0 27 0 0 0 chr4 157090737 157090764 -27197898 + AT_rich Low_complexity Low_complexity 1 27 0 30 0 0 0 chr4 157091103 157091133 -27197529 + AT_rich Low_complexity Low_complexity 1 30 0 2337 128 31 19 chr4 157091993 157092353 -27196309 - THE1B LTR MaLR 0 364 1 449 244 88 56 chr4 157093498 157093658 -27195004 - L2 LINE L2 0 3272 3108 227 264 33 116 chr4 157093700 157093821 -27194841 + MIR3 SINE MIR 59 169 -39 308 315 28 28 chr4 157093888 157093996 -27194666 + MER5B DNA MER1_type 36 143 -35 239 324 0 0 chr4 157094059 157094133 -27194529 + AluS SINE Alu 3 76 -227 866 48 0 9 chr4 157094554 157094659 -27194003 - AluSg SINE Alu -206 104 1 1811 102 72 0 chr4 157096479 157096623 -27192039 - AluSx SINE Alu -28 284 152 279 0 0 0 chr4 157096623 157096654 -27192008 + (TTTTA)n Simple_repeat Simple_repeat 3 33 0 1811 102 72 0 chr4 157096654 157096774 -27191888 - AluSx SINE Alu -160 152 1 2403 72 10 0 chr4 157096785 157097090 -27191572 - AluY SINE Alu -3 308 1 463 243 29 52 chr4 157097502 157097575 -27191087 - L1ME LINE L1 -611 5559 5486 755 185 8 8 chr4 157097575 157097705 -27190957 - FLAM_A SINE Alu -3 130 1 463 243 29 52 chr4 157097705 157097804 -27190858 - L1ME LINE L1 -684 5486 5391 2185 117 3 0 chr4 157097816 157098115 -27190547 + AluSg SINE Alu 1 300 -10 230 230 54 0 chr4 157098120 157098194 -27190468 + L1PA15 LINE L1 6088 6165 0 2294 113 3 0 chr4 157098788 157099097 -27189565 + AluSp SINE Alu 2 311 -2 1751 82 9 0 chr4 157099140 157099360 -27189302 + L1PA7 LINE L1 5933 6154 0 234 118 29 0 chr4 157099641 157099699 -27188963 + Alu SINE Alu 250 308 0 330 115 26 77 chr4 157099699 157099750 -27188912 + L1M LINE L1 5340 5387 -2421 1625 248 61 64 chr4 157099750 157100343 -27188319 + MLT1E LTR MaLR 1 591 -2 330 115 26 77 chr4 157100343 157100369 -27188293 + L1M LINE L1 5387 5413 -2395 2353 74 7 0 chr4 157100377 157100673 -27187989 + AluY SINE Alu 1 298 -13 21 0 0 0 chr4 157100761 157100782 -27187880 + AT_rich Low_complexity Low_complexity 1 21 0 2323 106 0 3 chr4 157101121 157101432 -27187230 + AluSg SINE Alu 1 310 0 362 283 53 0 chr4 157101557 157101670 -27186992 - L2 LINE L2 -1 3312 3194 2223 82 20 7 chr4 157102206 157102509 -27186153 - AluSg SINE Alu -3 307 1 2516 115 63 5 chr4 157103418 157103801 -27184861 - MER1A DNA MER1_type -121 408 4 2139 113 0 3 chr4 157106218 157106524 -27182138 - AluSx SINE Alu 0 305 1 1765 71 34 34 chr4 157107007 157107273 -27181389 - AluY SINE Alu -45 266 1 2492 61 3 16 chr4 157108709 157109021 -27179641 + AluY SINE Alu 1 308 -3 736 168 8 32 chr4 157109602 157109727 -27178935 + FLAM_A SINE Alu 1 122 -11 2307 67 0 0 chr4 157109777 157110062 -27178600 - AluY SINE Alu -5 306 22 2234 89 31 0 chr4 157110093 157110384 -27178278 + AluSx SINE Alu 1 300 -12 2985 52 3 8 chr4 157110654 157111023 -27177639 - MLT2A1 LTR ERVL -77 367 1 733 162 7 37 chr4 157111032 157111168 -27177494 - FLAM_C SINE Alu -1 132 1 937 295 45 62 chr4 157111284 157111748 -27176914 - MLT1K LTR MaLR 0 588 133 1247 178 5 0 chr4 157111752 157111971 -27176691 + AluJo SINE Alu 1 220 -92 344 143 16 0 chr4 157112088 157112151 -27176511 - LTR48 LTR ERV1 -60 727 664 5869 86 21 77 chr4 157112200 157113676 -27174986 - pTR5 LTR ERV1 0 2606 1524 1317 215 109 41 chr4 157113686 157114321 -27174341 - MER61E LTR ERV1 0 794 6 1618 170 0 14 chr4 157114322 157114598 -27174064 - AluJo SINE Alu -40 272 1 1218 178 149 65 chr4 157114701 157114954 -27173708 - MER57A LTR ERV1 0 403 118 2249 71 7 20 chr4 157114954 157115248 -27173414 + AluY SINE Alu 1 290 -21 1218 178 149 65 chr4 157115248 157115303 -27173359 - MER57A LTR ERV1 -285 118 69 913 129 43 0 chr4 157115610 157115749 -27172913 + Charlie3 DNA MER1_type 2562 2706 -4 1436 206 59 54 chr4 157116108 157116496 -27172166 - MLT1B LTR MaLR 0 390 1 701 159 100 2 chr4 157116583 157116738 -27171924 + L1MC/D LINE L1 5434 5600 -542 3643 69 2 7 chr4 157116893 157117343 -27171319 + LTR7 LTR ERV1 1 448 -2 445 309 215 17 chr4 157117345 157117824 -27170838 + L2 LINE L2 1719 2292 -1022 2238 93 7 0 chr4 157117824 157118115 -27170547 + AluSp SINE Alu 1 293 -20 310 212 35 12 chr4 157118115 157118200 -27170462 + L1MC4 LINE L1 6617 6703 -1339 23 54 0 0 chr4 157118200 157118237 -27170425 + AT_rich Low_complexity Low_complexity 1 37 0 5125 102 19 6 chr4 157118423 157119102 -27169560 + LTR12 LTR ERV1 1 688 0 1246 228 25 9 chr4 157119275 157119591 -27169071 + MER57A LTR ERV1 1 321 -82 586 170 0 10 chr4 157119720 157119820 -27168842 + MER57B LTR ERV1 336 434 0 271 159 58 29 chr4 157120217 157120286 -27168376 - MLT1J1 LTR MaLR -311 135 65 2413 93 3 0 chr4 157120443 157120745 -27167917 + AluSg SINE Alu 1 303 -7 612 299 64 5 chr4 157120845 157121118 -27167544 - L2 LINE L2 -234 3079 2791 1203 243 161 31 chr4 157121145 157121183 -27167479 - MLT2B1 LTR ERVL -8 512 480 297 0 0 0 chr4 157121183 157121216 -27167446 + (CA)n Simple_repeat Simple_repeat 2 34 0 1203 243 161 31 chr4 157121216 157121630 -27167032 - MLT2B1 LTR ERVL -40 480 1 3465 172 59 6 chr4 157121633 157122290 -27166372 - ERVL-B1 LTR ERVL -11 5753 5062 213 216 35 35 chr4 157122304 157122420 -27166242 + (CACAC)n Simple_repeat Simple_repeat 3 118 0 7314 60 14 5 chr4 157122650 157124286 -27164376 - L1PA4 LINE L1 -41 6114 4472 1003 121 46 17 chr4 157124286 157124460 -27164202 + MER7C DNA MER2_type 130 308 -294 1177 138 41 25 chr4 157124589 157124785 -27163877 - AluJb SINE Alu -113 199 1 1802 111 15 4 chr4 157124785 157125055 -27163607 - Tigger2 DNA MER2_type -162 2556 2284 2561 69 0 0 chr4 157125074 157125380 -27163282 + AluSq SINE Alu 1 306 -7 350 137 0 0 chr4 157125381 157125432 -27163230 - Tigger2 DNA MER2_type -2666 52 2 1297 180 130 41 chr4 157125913 157126262 -27162400 - MLT1F LTR MaLR -9 533 175 447 134 30 0 chr4 157126257 157126324 -27162338 - Tigger2 DNA MER2_type -2649 69 1 * 331 158 0 0 chr4 157126427 157126484 -27162178 + AluY SINE Alu 1 57 -251 1434 157 13 57 chr4 157127679 157127978 -27160684 + AluJo SINE Alu 1 286 -26 270 0 0 0 chr4 157127978 157128008 -27160654 + (CA)n Simple_repeat Simple_repeat 2 31 0 676 256 59 23 chr4 157128021 157128240 -27160422 - MLT1F LTR MaLR -30 512 286 1542 126 97 8 chr4 157128342 157128580 -27160082 + AluSx SINE Alu 1 259 -53 199 273 0 0 chr4 157129525 157129569 -27159093 - L2 LINE L2 0 3272 3229 383 213 16 76 chr4 157129681 157129784 -27158878 - LTR12 LTR ERV1 -133 581 473 1718 55 0 37 chr4 157129784 157130002 -27158660 + AluY SINE Alu 58 267 -44 383 213 16 76 chr4 157130002 157130032 -27158630 - LTR12 LTR ERV1 -241 473 352 232 211 35 0 chr4 157130041 157130098 -27158564 - LTR30 LTR ERV1 -108 614 556 1532 275 106 60 chr4 157130332 157131159 -27157503 + L1ME LINE L1 47 835 -5245 1915 143 3 3 chr4 157131159 157131445 -27157217 + AluSx SINE Alu 11 296 -16 1532 275 106 60 chr4 157131445 157131456 -27157206 + L1ME LINE L1 835 844 -5236 1763 167 20 7 chr4 157131456 157131749 -27156913 + AluJb SINE Alu 1 297 -15 1532 275 106 60 chr4 157131749 157132176 -27156486 + L1ME LINE L1 844 1353 -4727 210 71 0 0 chr4 157132442 157132470 -27156192 + (A)n Simple_repeat Simple_repeat 1 28 0 2139 187 50 28 chr4 157132471 157132694 -27155968 - L1 LINE L1 -1527 4619 4402 1621 196 7 7 chr4 157132694 157132995 -27155667 - AluJo SINE Alu -7 305 5 2139 187 50 28 chr4 157132995 157133274 -27155388 - L1 LINE L1 -1744 4402 4106 658 321 4 15 chr4 157133285 157133547 -27155115 + L1ME LINE L1 1426 1684 -4577 602 238 21 7 chr4 157133555 157133698 -27154964 - L1ME2 LINE L1 -78 6086 5942 2233 103 3 10 chr4 157133720 157134021 -27154641 + AluSx SINE Alu 1 299 -13 1669 113 4 0 chr4 157135141 157135379 -27153283 - L1P4 LINE L1 -393 5775 5537 * 2827 118 47 7 chr4 157135329 157135779 -27152883 + L1PA10 LINE L1 5701 6168 0 574 135 34 0 chr4 157136575 157136664 -27151998 + AluJb SINE Alu 201 292 -20 738 186 99 12 chr4 157136856 157137017 -27151645 + MER45A DNA AcHobo 1 175 -3 2635 51 0 0 chr4 157137182 157137493 -27151169 - AluY SINE Alu 0 311 1 2245 114 0 0 chr4 157137899 157138205 -27150457 + AluSx SINE Alu 1 306 -6 191 364 34 11 chr4 157138765 157138853 -27149809 + MIR SINE MIR 16 105 -103 442 192 0 0 chr4 157138895 157138968 -27149694 + MER5A DNA MER1_type 1 73 -116 1859 141 42 3 chr4 157138971 157139254 -27149408 + AluSx SINE Alu 1 294 -18 351 196 0 36 chr4 157139270 157139382 -27149280 + GA-rich Low_complexity Low_complexity 3 110 0 2157 74 0 23 chr4 157139383 157139682 -27148980 + AluY SINE Alu 1 292 -19 870 62 0 0 chr4 157139682 157139795 -27148867 + (GGAA)n Simple_repeat Simple_repeat 3 115 0 1152 317 59 38 chr4 157139809 157140522 -27148140 + L1M3a LINE L1 2 729 -5226 1683 256 32 43 chr4 157140610 157141230 -27147432 + L1M3f LINE L1 557 1169 -4159 782 178 0 0 chr4 157141236 157141354 -27147308 + MER5A DNA MER1_type 72 189 0 362 336 13 13 chr4 157141433 157141582 -27147080 - MIR SINE MIR -16 246 98 542 293 78 78 chr4 157141638 157141972 -27146690 + LTR16A LTR ERVL 117 450 0 311 356 20 0 chr4 157141972 157142073 -27146589 - MIR SINE MIR -159 103 1 240 292 208 8 chr4 157142136 157142256 -27146406 - MIR3 SINE MIR -33 175 32 517 304 111 5 chr4 157142654 157142871 -27145791 + MIR SINE MIR 15 254 -8 361 280 193 18 chr4 157143488 157143706 -27144956 - MIR SINE MIR 0 262 7 2095 102 3 14 chr4 157144054 157144348 -27144314 + AluSq SINE Alu 1 291 -22 601 216 0 0 chr4 157145627 157145729 -27142933 - MER5B DNA MER1_type -76 102 1 535 29 143 0 chr4 157145914 157145984 -27142678 - MADE1 DNA Mariner 0 80 1 1853 128 17 7 chr4 157146287 157146584 -27142078 - MSTB LTR MaLR -126 300 1 2352 103 0 3 chr4 157147085 157147396 -27141266 + AluSg SINE Alu 1 310 0 362 283 53 0 chr4 157147517 157147630 -27141032 - L2 LINE L2 -1 3312 3194 21 0 0 0 chr4 157148166 157148187 -27140475 + AT_rich Low_complexity Low_complexity 1 21 0 2303 77 3 0 chr4 157148187 157148474 -27140188 - AluY SINE Alu -23 288 1 308 128 26 77 chr4 157148482 157148508 -27140154 - L1M LINE L1 -2395 5413 5387 1692 246 59 64 chr4 157148508 157149102 -27139560 - MLT1E LTR MaLR -2 591 1 308 128 26 77 chr4 157149102 157149153 -27139509 - L1M LINE L1 -2421 5387 5340 233 118 29 0 chr4 157149153 157149211 -27139451 - Alu SINE Alu 0 308 250 1774 77 9 0 chr4 157149501 157149721 -27138941 - L1PA7 LINE L1 0 6154 5933 2139 113 3 22 chr4 157149760 157150078 -27138584 - AluSx SINE Alu 0 312 1 442 218 67 109 chr4 157150184 157150349 -27138313 - MLT1E2 LTR MaLR -468 158 1 1405 167 62 127 chr4 157150935 157151030 -27137632 - MLT2D LTR ERVL -10 404 304 2770 130 42 5 chr4 157151030 157151438 -27137224 + MSTB LTR MaLR 1 423 -3 1405 167 62 127 chr4 157151438 157151774 -27136888 - MLT2D LTR ERVL -110 304 1 2161 152 18 39 chr4 157151774 157152156 -27136506 - MLT1B LTR MaLR -16 374 1 2148 116 10 3 chr4 157152169 157152463 -27136199 - AluSx SINE Alu -16 296 1 360 0 0 0 chr4 157153546 157153586 -27135076 + (TG)n Simple_repeat Simple_repeat 2 41 0 751 270 106 4 chr4 157153661 157153887 -27134775 - MIR SINE MIR -2 260 12 379 283 26 9 chr4 157154205 157154318 -27134344 - MIR SINE MIR 0 262 148 227 297 16 0 chr4 157155566 157155630 -27133032 + MIR SINE MIR 12 76 -186 2127 112 11 0 chr4 157155643 157155930 -27132732 + AluSc SINE Alu 1 290 -19 223 313 89 18 chr4 157156443 157156555 -27132107 + MIR SINE MIR 33 152 -110 387 314 0 12 chr4 157156623 157156792 -27131870 + (TG)n Simple_repeat Simple_repeat 1 167 0 724 340 13 0 chr4 157157463 157157695 -27130967 - MIR SINE MIR -16 246 12 1699 233 44 4 chr4 157157819 157158274 -27130388 + L1M4 LINE L1 4854 5326 -820 1713 144 0 4 chr4 157158276 157158539 -27130123 + L1 LINE L1 4075 4336 -1810 2070 130 7 0 chr4 157158539 157158831 -27129831 + AluSx SINE Alu 2 295 -17 882 133 0 0 chr4 157158832 157158967 -27129695 + L1 LINE L1 4916 5050 -1096 1166 187 5 5 chr4 157158980 157159212 -27129450 + AluJb SINE Alu 84 315 0 1405 183 22 0 chr4 157159215 157159483 -27129179 + L1 LINE L1 5062 5335 -811 462 121 37 17 chr4 157159481 157159569 -27129093 + L1ME LINE L1 5692 5775 -391 * 712 236 14 0 chr4 157159584 157159724 -27128938 + MER7C DNA MER2_type 2 143 -459 1095 139 17 0 chr4 157159724 157159897 -27128765 - L1PA5 LINE L1 0 6154 5979 2140 116 10 3 chr4 157160587 157160890 -27127772 - AluSp SINE Alu -8 305 1 1341 258 37 43 chr4 157160902 157161303 -27127359 + L2 LINE L2 1920 2319 -995 511 145 34 43 chr4 157161303 157161420 -27127242 - L1MA9 LINE L1 -5 6307 6192 1341 258 37 43 chr4 157161420 157161480 -27127182 + L2 LINE L2 2319 2378 -936 1247 112 0 0 chr4 157161581 157161769 -27126893 - L1P LINE L1 -861 5285 5098 189 0 0 0 chr4 157161831 157161852 -27126810 + (A)n Simple_repeat Simple_repeat 1 21 0 2999 142 16 8 chr4 157162492 157162986 -27125676 - L1MB3 LINE L1 -7 6176 5679 450 0 0 0 chr4 157164968 157165018 -27123644 + (TG)n Simple_repeat Simple_repeat 2 51 0 471 302 270 22 chr4 157165398 157165901 -27122761 + L2 LINE L2 2343 2970 -344 302 377 0 38 chr4 157165964 157166070 -27122592 + L2 LINE L2 3171 3272 0 325 362 157 0 chr4 157166092 157166462 -27122200 - L2 LINE L2 -993 2321 1894 451 210 126 8 chr4 157166921 157167040 -27121622 - L1MDa LINE L1 -6067 473 341 333 0 0 0 chr4 157167056 157167093 -27121569 + (TG)n Simple_repeat Simple_repeat 2 38 0 849 118 0 52 chr4 157167096 157167232 -27121430 - FLAM_C SINE Alu -14 129 1 1270 216 90 13 chr4 157167232 157167306 -27121356 - L1MDa LINE L1 -6180 360 293 207 0 0 0 chr4 157167306 157167329 -27121333 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1270 216 90 13 chr4 157167329 157167555 -27121107 - L1MDa LINE L1 -6247 293 37 1417 159 28 4 chr4 157168044 157168295 -27120367 + L1MA7 LINE L1 6031 6287 -4 26 0 0 0 chr4 157168295 157168321 -27120341 + AT_rich Low_complexity Low_complexity 1 26 0 2235 124 0 0 chr4 157168699 157169005 -27119657 + AluSx SINE Alu 1 306 -6 191 364 34 11 chr4 157169563 157169651 -27119011 + MIR SINE MIR 16 105 -103 442 192 0 0 chr4 157169693 157169766 -27118896 + MER5A DNA MER1_type 1 73 -116 1999 146 7 7 chr4 157169769 157170078 -27118584 + AluSx SINE Alu 1 309 -3 1791 98 76 0 chr4 157170089 157170208 -27118454 + AluSx SINE Alu 1 110 -202 279 0 0 0 chr4 157170208 157170239 -27118423 + (TAAAA)n Simple_repeat Simple_repeat 3 33 0 1791 98 76 0 chr4 157170239 157170383 -27118279 + AluSx SINE Alu 110 284 -28 22 0 0 0 chr4 157171890 157171912 -27116750 + AT_rich Low_complexity Low_complexity 1 22 0 231 36 0 0 chr4 157173436 157173464 -27115198 + (TG)n Simple_repeat Simple_repeat 2 29 0 713 153 0 0 chr4 157174194 157174305 -27114357 + FLAM_C SINE Alu 1 111 -32 450 0 0 0 chr4 157174316 157174366 -27114296 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 198 103 0 0 chr4 157174483 157174512 -27114150 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1811 136 3 73 chr4 157174751 157174867 -27113795 + AluSx SINE Alu 1 123 -189 3677 191 78 5 chr4 157174867 157175637 -27113025 - LTR1B LTR ERV1 0 826 1 1811 136 3 73 chr4 157175637 157175837 -27112825 + AluSx SINE Alu 123 295 -17 2282 97 7 0 chr4 157176070 157176379 -27112283 - AluY SINE Alu 0 311 1 391 231 35 81 chr4 157177096 157177269 -27111393 - L1MC5 LINE L1 -51 7910 7746 490 117 37 61 chr4 157177327 157177519 -27111143 - Tigger2 DNA MER2_type 0 2718 2487 786 194 0 15 chr4 157177527 157177710 -27110952 + FLAM_C SINE Alu 1 181 0 624 199 0 61 chr4 157177715 157177829 -27110833 + FLAM_C SINE Alu 1 108 -204 2323 131 11 11 chr4 157177829 157178204 -27110458 - THE1C LTR MaLR 0 375 1 624 199 0 61 chr4 157178204 157178220 -27110442 + FLAM_C SINE Alu 108 123 -189 354 259 54 54 chr4 157178896 157179043 -27109619 + Charlie2a DNA MER1_type 2 148 -2634 226 242 42 63 chr4 157179089 157179184 -27109478 - MLT1J2 LTR MaLR -1 449 357 339 301 36 30 chr4 157179541 157179707 -27108955 + Charlie2a DNA MER1_type 231 397 -2385 383 208 5 112 chr4 157179840 157180037 -27108625 + Charlie2a DNA MER1_type 839 1014 -1848 318 207 46 11 chr4 157180038 157180120 -27108542 + Charlie2a DNA MER1_type 2748 2832 -30 526 330 60 0 chr4 157180120 157180320 -27108342 + LTR50 LTR ERVL 1 212 -583 855 289 43 86 chr4 157180522 157181079 -27107583 + ERVL LTR ERVL 1267 1799 -3965 442 346 75 14 chr4 157181349 157181696 -27106966 + ERVL LTR ERVL 4945 5312 -452 3131 71 43 14 chr4 157182028 157182465 -27106197 - MLT2A2 LTR ERVL -3 450 1 567 194 52 0 chr4 157182469 157182603 -27106059 + L1MA9 LINE L1 6172 6312 0 236 226 16 0 chr4 157182686 157182748 -27105914 + (TA)n Simple_repeat Simple_repeat 2 64 0 190 394 71 11 chr4 157182897 157183179 -27105483 - L2 LINE L2 -920 2394 2096 6310 35 0 0 chr4 157183189 157183957 -27104705 + L1P LINE L1 4245 5012 -1134 2685 158 20 43 chr4 157184059 157184406 -27104256 + L1MA4A LINE L1 5727 6057 -246 1582 11 0 0 chr4 157184406 157184581 -27104081 - AluYb8 SINE Alu 0 318 144 2685 158 20 43 chr4 157184581 157184817 -27103845 + L1MA4A LINE L1 6057 6297 -6 31 0 0 0 chr4 157186266 157186297 -27102365 + AT_rich Low_complexity Low_complexity 1 31 0 316 338 39 13 chr4 157187236 157187390 -27101272 - L1ME4a LINE L1 -12 6109 5952 343 306 65 24 chr4 157188835 157189005 -27099657 - L2 LINE L2 -837 2477 2301 192 369 25 33 chr4 157189006 157189128 -27099534 - L2 LINE L2 -1405 1909 1789 2723 112 7 14 chr4 157189657 157190084 -27098578 - L1M2 LINE L1 -562 5738 5315 12797 114 9 50 chr4 157190398 157193188 -27095474 + L1P3 LINE L1 1 2789 -3672 1285 291 134 15 chr4 157193301 157193778 -27094884 + MLT1H LTR MaLR 13 546 -3 1194 164 7 101 chr4 157194058 157194175 -27094487 - L1MA7 LINE L1 -234 6057 5931 2183 70 0 3 chr4 157194175 157194461 -27094201 - L1PA5 LINE L1 -8 6146 5862 1194 164 7 101 chr4 157194461 157194641 -27094021 - L1MA7 LINE L1 -360 5931 5788 979 130 70 35 chr4 157194641 157194870 -27093792 + L1MA7 LINE L1 6054 6291 0 1986 178 15 7 chr4 157195224 157195634 -27093028 - L1MB4 LINE L1 -12 6168 5756 208 377 66 0 chr4 157195652 157195774 -27092888 - L2 LINE L2 -621 2693 2564 22 0 0 0 chr4 157196508 157196530 -27092132 + AT_rich Low_complexity Low_complexity 1 22 0 23 97 0 0 chr4 157196568 157196640 -27092022 + AT_rich Low_complexity Low_complexity 1 72 0 396 0 0 0 chr4 157197774 157197818 -27090844 + (CA)n Simple_repeat Simple_repeat 1 44 0 3342 34 3 0 chr4 157197984 157198371 -27090291 + MER11D LTR ERVK 1 388 -509 3839 48 48 0 chr4 157198384 157198858 -27089804 - MER11D LTR ERVK 0 897 401 193 29 29 29 chr4 157198960 157198995 -27089667 + (TATAA)n Simple_repeat Simple_repeat 5 39 0 333 118 0 0 chr4 157199001 157199052 -27089610 + (CA)n Simple_repeat Simple_repeat 2 52 0 238 339 34 28 chr4 157199099 157199276 -27089386 + L1ME LINE L1 2 179 -5891 23 33 0 0 chr4 157200012 157200042 -27088620 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr4 157200142 157200167 -27088495 + AT_rich Low_complexity Low_complexity 1 25 0 1489 233 87 69 chr4 157202347 157202854 -27085808 + MER97c DNA MER1_type? 49 564 -526 21 36 0 0 chr4 157202860 157202888 -27085774 + AT_rich Low_complexity Low_complexity 1 28 0 2194 118 3 9 chr4 157202944 157203259 -27085403 - AluSq SINE Alu 0 313 1 226 135 77 0 chr4 157203283 157203335 -27085327 + MER97a DNA MER1_type? 804 859 -35 2396 111 16 32 chr4 157203593 157203963 -27084699 - THE1B LTR MaLR 0 364 1 9916 110 34 28 chr4 157203963 157205533 -27083129 - THE1B-int LTR MaLR 0 1580 1 2024 171 19 16 chr4 157205533 157205896 -27082766 - THE1B LTR MaLR 0 364 1 197 298 0 0 chr4 157206031 157206078 -27082584 + L2 LINE L2 3201 3247 -25 1326 200 55 21 chr4 157206189 157206573 -27082089 + MER67C LTR ERV1 1 403 -243 328 254 114 0 chr4 157206586 157206700 -27081962 + MER67D LTR ERV1 359 485 -29 1133 57 0 0 chr4 157206792 157206933 -27081729 + MER11D LTR ERVK 1 141 -756 363 23 0 0 chr4 157207646 157207690 -27080972 + (TG)n Simple_repeat Simple_repeat 2 45 0 22 88 0 0 chr4 157208487 157208544 -27080118 + AT_rich Low_complexity Low_complexity 1 57 0 204 331 94 8 chr4 157208787 157208914 -27079748 + L2 LINE L2 3176 3313 0 226 388 36 16 chr4 157208992 157209296 -27079366 + L2 LINE L2 1313 1622 -1692 521 259 68 80 chr4 157209447 157209783 -27078879 + MER46C DNA MER2_type 7 338 0 337 336 103 12 chr4 157209804 157210057 -27078605 + L2 LINE L2 1777 2052 -1262 29 0 0 0 chr4 157210064 157210093 -27078569 + AT_rich Low_complexity Low_complexity 1 29 0 7653 23 0 4 chr4 157210093 157211121 -27077541 - L1PA4 LINE L1 -3 6152 5126 268 274 0 14 chr4 157211256 157211334 -27077328 + CT-rich Low_complexity Low_complexity 1 76 0 238 372 95 20 chr4 157211809 157211957 -27076705 + MIR3 SINE MIR 20 178 -30 840 204 42 0 chr4 157212082 157212249 -27076413 - MER58B DNA MER1_type 0 341 168 2315 83 3 0 chr4 157213065 157213355 -27075307 - AluY SINE Alu -20 291 1 260 260 248 0 chr4 157213503 157213612 -27075050 - AluYa8 SINE Alu -109 191 121 2109 145 0 0 chr4 157214341 157214651 -27074011 - AluSx SINE Alu -2 310 1 228 245 0 0 chr4 157216117 157216166 -27072496 + L2 LINE L2 3261 3309 -4 287 408 19 5 chr4 157216581 157216787 -27071875 - MIR SINE MIR -47 215 7 12875 160 23 23 chr4 157217054 157219472 -27069190 - Tigger1 DNA MER2_type 0 2418 1 349 331 23 15 chr4 157219731 157219861 -27068801 + L2 LINE L2 2917 3047 -225 333 347 114 5 chr4 157220554 157220773 -27067889 + MIR SINE MIR 20 262 0 22 0 0 0 chr4 157221090 157221112 -27067550 + AT_rich Low_complexity Low_complexity 1 22 0 507 325 56 43 chr4 157221429 157221820 -27066842 - L2 LINE L2 -2396 918 523 275 141 247 12 chr4 157222170 157222255 -27066407 + MER103 DNA DNA 2 106 -60 190 0 0 0 chr4 157222527 157222548 -27066114 + (TTA)n Simple_repeat Simple_repeat 3 180 0 703 46 0 0 chr4 157222548 157222636 -27066026 - AluY SINE Alu -1 315 208 684 234 13 32 chr4 157222636 157222790 -27065872 - MIR SINE MIR -96 166 16 195 167 0 0 chr4 157223208 157223250 -27065412 + (TG)n Simple_repeat Simple_repeat 2 43 0 261 0 0 0 chr4 157223624 157223653 -27065009 + (TC)n Simple_repeat Simple_repeat 2 30 0 29 60 0 0 chr4 157223947 157223997 -27064665 + AT_rich Low_complexity Low_complexity 1 50 0 1706 181 7 7 chr4 157224086 157224378 -27064284 - AluJb SINE Alu -20 292 1 31 26 0 0 chr4 157225290 157225328 -27063334 + AT_rich Low_complexity Low_complexity 1 38 0 484 172 180 0 chr4 157225687 157225809 -27062853 + Charlie4 DNA MER1_type 1818 1961 0 609 273 66 11 chr4 157225836 157226019 -27062643 - MIR SINE MIR -14 248 56 549 336 85 20 chr4 157227867 157228325 -27060337 + L2 LINE L2 2380 2867 -447 521 261 38 32 chr4 157228331 157228676 -27059986 + LTR52 LTR ERVL 1 402 -19 671 275 63 24 chr4 157230047 157230254 -27058408 + MIR SINE MIR 38 252 -10 48 43 0 0 chr4 157232462 157232531 -27056131 + AT_rich Low_complexity Low_complexity 1 69 0 4932 156 0 0 chr4 157232625 157233725 -27054937 - L1PA16 LINE L1 -9 6860 5756 369 179 0 15 chr4 157233728 157233795 -27054867 - L1PA16 LINE L1 -2060 4789 4724 * 1154 89 33 17 chr4 157233792 157233972 -27054690 - L1MA1 LINE L1 -458 5844 5662 * 8546 223 25 15 chr4 157233967 157234633 -27054029 - L1 LINE L1 -1132 5014 4357 3319 88 27 0 chr4 157234633 157235108 -27053554 + L1PA10 LINE L1 5665 6152 -16 186 43 0 0 chr4 157235118 157235141 -27053521 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 8546 223 25 15 chr4 157235141 157236660 -27052002 - L1 LINE L1 -1797 4349 2794 1880 182 65 14 chr4 157236760 157237128 -27051534 - MSTA LTR MaLR -39 389 3 9082 179 15 6 chr4 157237130 157238767 -27049895 - MSTA-int LTR MaLR 0 1651 1 1937 163 101 0 chr4 157238767 157239154 -27049508 - MSTA LTR MaLR 0 428 3 12453 186 27 19 chr4 157239180 157240232 -27048430 - L1PA16 LINE L1 -3388 3461 2419 2245 109 0 7 chr4 157240232 157240534 -27048128 - AluSq SINE Alu -11 302 3 12453 186 27 19 chr4 157240534 157243023 -27045639 - L1PA16 LINE L1 -4430 2419 1 305 307 94 33 chr4 157243876 157244088 -27044574 - MIR SINE MIR -1 261 37 313 127 25 0 chr4 157244711 157244790 -27043872 + (TG)n Simple_repeat Simple_repeat 2 82 0 280 247 43 11 chr4 157245307 157245400 -27043262 + GA-rich Low_complexity Low_complexity 4 99 0 783 236 6 6 chr4 157245416 157245581 -27043081 - FRAM SINE Alu -15 161 1 600 245 48 82 chr4 157247357 157247626 -27041036 - L2 LINE L2 -8 3305 3046 2348 100 10 0 chr4 157247738 157248039 -27040623 - AluSx SINE Alu -7 305 2 187 310 138 11 chr4 157248504 157248591 -27040071 - MIR SINE MIR -116 146 49 340 296 40 8 chr4 157248643 157248768 -27039894 - L2 LINE L2 -1 3312 3184 359 292 151 23 chr4 157248886 157249105 -27039557 - MIR SINE MIR -14 248 2 739 247 13 0 chr4 157249179 157249337 -27039325 + MER58A DNA MER1_type 49 208 -16 648 300 59 8 chr4 157249415 157249652 -27039010 - L2 LINE L2 -354 2960 2712 1367 292 32 3 chr4 157249652 157250022 -27038640 + LTR16A LTR ERVL 1 381 -69 481 268 150 19 chr4 157250110 157250323 -27038339 - L2 LINE L2 -647 2667 2427 294 325 36 54 chr4 157250428 157250594 -27038068 - MLT1J2 LTR MaLR -24 426 264 1542 285 18 74 chr4 157250862 157251480 -27037182 - L2 LINE L2 -969 2345 1763 363 44 0 0 chr4 157251738 157251783 -27036879 + (TG)n Simple_repeat Simple_repeat 2 46 0 1542 185 0 64 chr4 157252203 157252516 -27036146 - AluJo SINE Alu -19 293 1 248 197 0 26 chr4 157254930 157255006 -27033656 + (TATATG)n Simple_repeat Simple_repeat 3 76 0 1659 149 89 19 chr4 157255698 157256014 -27032648 + MER44D DNA MER2_type 1 608 -1 1613 271 80 32 chr4 157256523 157258089 -27030573 - L1ME2 LINE L1 -16 6217 2197 307 262 24 0 chr4 157258146 157258230 -27030432 - L1ME2 LINE L1 -4453 1943 1858 734 250 54 81 chr4 157258232 157258492 -27030170 - L1ME2 LINE L1 -6089 307 55 287 288 75 46 chr4 157258512 157259144 -27029518 - L1ME LINE L1 -4729 1655 1013 1607 154 21 14 chr4 157259565 157259850 -27028812 - Tigger3(Golem) DNA MER2_type -1 3028 2742 12026 204 26 17 chr4 157259858 157260599 -27028063 - L1PBa LINE L1 -1002 5860 5128 195 42 0 0 chr4 157260599 157260623 -27028039 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 12026 204 26 17 chr4 157260623 157263040 -27025622 - L1PBa LINE L1 -1734 5128 2671 5571 233 37 33 chr4 157263067 157265881 -27022781 - L1PBa LINE L1 -4976 1887 9 22 0 0 0 chr4 157266928 157266950 -27021712 + AT_rich Low_complexity Low_complexity 1 22 0 394 307 55 31 chr4 157269688 157269851 -27018811 - MER63A DNA MER1_type -2 208 42 205 329 48 34 chr4 157270262 157270408 -27018254 + L2 LINE L2 2715 2862 -452 321 169 0 0 chr4 157271205 157271264 -27017398 + CT-rich Low_complexity Low_complexity 2 60 0 757 303 86 43 chr4 157271584 157272346 -27016316 + L2 LINE L2 2516 3313 0 182 353 0 0 chr4 157273083 157273134 -27015528 + L2 LINE L2 3204 3254 -18 7257 41 26 1 chr4 157273698 157274573 -27014089 - MER11D LTR ERVK 0 897 1 3478 61 0 0 chr4 157274573 157275015 -27013647 - HERVK11D LTR ERVK 0 7752 7311 189 0 0 0 chr4 157275213 157275234 -27013428 + (TATG)n Simple_repeat Simple_repeat 2 22 0 201 341 51 40 chr4 157276394 157276570 -27012092 + L2 LINE L2 1916 2093 -1221 411 267 8 46 chr4 157276769 157276785 -27011877 + MER94 DNA DNA 9 24 -110 1307 208 46 25 chr4 157276785 157276948 -27011714 - AluJb SINE Alu -22 290 117 237 83 0 0 chr4 157276948 157276984 -27011678 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1307 208 46 25 chr4 157276984 157277104 -27011558 - AluJb SINE Alu -195 117 1 411 267 8 46 chr4 157277104 157277218 -27011444 + MER94 DNA DNA 24 134 0 1867 148 7 0 chr4 157277370 157277674 -27010988 - AluSg SINE Alu -4 306 1 6374 87 18 2 chr4 157277964 157279128 -27009534 - L1PA8 LINE L1 -1 6171 4999 908 151 38 70 chr4 157280781 157280944 -27007718 - Tigger2 DNA MER2_type 0 2708 2541 2026 117 0 0 chr4 157280944 157281218 -27007444 + AluSx SINE Alu 1 274 -38 279 0 0 0 chr4 157281222 157281253 -27007409 + (TC)n Simple_repeat Simple_repeat 2 32 0 908 151 38 70 chr4 157281253 157281270 -27007392 - Tigger2 DNA MER2_type -170 2538 2529 1062 134 32 0 chr4 157281331 157281517 -27007145 - Tigger2 DNA MER2_type -161 2557 2366 275 156 0 0 chr4 157281514 157281559 -27007103 - Tigger2 DNA MER2_type -2673 45 1 * 2127 211 54 8 chr4 157281572 157282051 -27006611 - L1MB5 LINE L1 -26 6148 5648 271 241 19 0 chr4 157282424 157282478 -27006184 + MIR SINE MIR 15 69 -193 410 101 14 0 chr4 157282584 157282653 -27006009 + (TA)n Simple_repeat Simple_repeat 2 71 0 38418 83 11 7 chr4 157283176 157288291 -27000371 + HERVL LTR ERVL 99 5234 -420 23548 150 17 24 chr4 157288300 157290313 -26998349 + L1P3 LINE L1 10 2035 -4426 261 0 0 0 chr4 157290313 157290342 -26998320 + (TG)n Simple_repeat Simple_repeat 2 30 0 7478 35 39 0 chr4 157290342 157291311 -26997351 - L1PA5 LINE L1 -13 6141 5164 23548 150 17 24 chr4 157291311 157291988 -26996674 + L1P3 LINE L1 2034 2714 -3747 243 0 0 0 chr4 157291988 157292015 -26996647 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 23548 150 17 24 chr4 157292015 157294402 -26994260 + L1P3 LINE L1 2714 5105 -1356 2327 221 9 7 chr4 157294404 157294965 -26993697 - L1 LINE L1 -1821 4389 3828 378 312 61 28 chr4 157295059 157295306 -26993356 - L1 LINE L1 -5852 289 35 515 289 87 19 chr4 157295960 157296168 -26992494 - MIR SINE MIR -26 236 15 35 71 0 0 chr4 157300055 157300125 -26988537 + AT_rich Low_complexity Low_complexity 1 70 0 2461 45 0 0 chr4 157301025 157301317 -26987345 + AluYb8 SINE Alu 25 316 -2 233 248 106 9 chr4 157303922 157304035 -26984627 + MER99 DNA DNA 1 124 -704 311 306 32 73 chr4 157305218 157305301 -26983361 - MIR3 SINE MIR -27 181 103 2283 96 41 9 chr4 157305301 157305645 -26983017 - THE1A LTR MaLR 0 355 1 311 306 32 73 chr4 157305645 157305685 -26982977 - MIR3 SINE MIR -105 103 63 205 328 0 0 chr4 157306335 157306399 -26982263 - MIR SINE MIR 0 262 199 296 328 38 8 chr4 157307953 157308084 -26980578 - LTR16C LTR ERVL -9 482 348 435 255 192 22 chr4 157308477 157308842 -26979820 - L1MC5 LINE L1 -210 7751 7325 537 212 58 78 chr4 157308857 157309150 -26979512 - L1MC5 LINE L1 -752 7209 6923 444 206 62 69 chr4 157309238 157309398 -26979264 - L1MC5 LINE L1 -1190 6771 6613 23 33 0 0 chr4 157309433 157309463 -26979199 + AT_rich Low_complexity Low_complexity 1 30 0 246 195 0 0 chr4 157309648 157309689 -26978973 - MER81 DNA DNA -29 85 45 1474 288 98 31 chr4 157309915 157310530 -26978132 + L2 LINE L2 1821 2476 -838 344 123 113 57 chr4 157310530 157310636 -26978026 - L1MB8 LINE L1 0 6178 6067 7587 242 71 21 chr4 157310784 157313378 -26975284 - L1M4 LINE L1 -1232 5725 3003 444 276 72 13 chr4 157313392 157313692 -26974970 - L1MEc LINE L1 -3798 3159 2881 1028 249 92 98 chr4 157313824 157314305 -26974357 - L1MEc LINE L1 -6377 482 5 800 311 68 29 chr4 157314314 157314723 -26973939 + L2 LINE L2 2476 2900 -414 774 352 33 22 chr4 157314833 157315197 -26973465 + L2 LINE L2 2946 3313 0 2269 196 63 32 chr4 157318217 157318789 -26969873 + Tigger7 DNA MER2_type 7 2481 -6 2357 66 0 3 chr4 157318905 157319210 -26969452 + AluY SINE Alu 1 304 -7 1725 192 26 40 chr4 157319708 157320057 -26968605 - MER2 DNA MER2_type 0 345 2 377 253 60 60 chr4 157320269 157320419 -26968243 - LTR52 LTR ERVL -210 211 62 5261 145 23 6 chr4 157320457 157321423 -26967239 - L1PA16 LINE L1 -12 6154 5172 305 228 22 0 chr4 157322100 157322192 -26966470 + (TA)n Simple_repeat Simple_repeat 2 95 0 335 270 10 20 chr4 157322212 157322312 -26966350 - L1MC4 LINE L1 -1330 6712 6614 26 64 0 0 chr4 157323599 157323646 -26965016 + AT_rich Low_complexity Low_complexity 1 47 0 21 71 0 0 chr4 157324364 157324406 -26964256 + AT_rich Low_complexity Low_complexity 1 42 0 430 178 0 0 chr4 157324513 157324586 -26964076 - MLT2B1 LTR ERVL -447 73 1 1360 180 54 10 chr4 157324591 157324885 -26963777 - ERVL-B1 LTR ERVL -25 5739 5433 9009 191 11 15 chr4 157325002 157326661 -26962001 - ERVL LTR ERVL -1954 3810 2158 1167 225 22 0 chr4 157326660 157326887 -26961775 - ERVL LTR ERVL -3759 2005 1774 * 1352 198 96 51 chr4 157326913 157327287 -26961375 - MSTD LTR MaLR 0 396 6 4597 221 29 25 chr4 157327288 157328333 -26960329 - ERVL LTR ERVL -3989 1775 727 1488 271 74 7 chr4 157328379 157328814 -26959848 - ERVL LTR ERVL -5182 582 119 542 234 12 48 chr4 157328814 157328981 -26959681 - MLT2B1 LTR ERVL -357 163 3 318 328 109 58 chr4 157329231 157329746 -26958916 - HAL1 LINE L1 -1061 1446 906 29 28 0 0 chr4 157331180 157331216 -26957446 + AT_rich Low_complexity Low_complexity 1 36 0 1139 220 17 1 chr4 157332423 157332743 -26955919 + MLT1A1 LTR MaLR 6 365 0 22 0 0 0 chr4 157333008 157333030 -26955632 + AT_rich Low_complexity Low_complexity 1 22 0 395 372 20 7 chr4 157333113 157333261 -26955401 + MER5A DNA MER1_type 39 188 -1 2827 95 37 9 chr4 157334154 157334195 -26954467 - MLT2A1 LTR ERVL 0 444 406 261 0 0 0 chr4 157334195 157334224 -26954438 + (TA)n Simple_repeat Simple_repeat 1 29 0 279 0 0 0 chr4 157334233 157334264 -26954398 + (CA)n Simple_repeat Simple_repeat 2 32 0 2827 95 37 9 chr4 157334264 157334644 -26954018 - MLT2A1 LTR ERVL -45 399 1 8318 195 23 30 chr4 157334679 157337412 -26951250 - L1PA13 LINE L1 0 6163 3441 236 296 19 28 chr4 157337912 157338020 -26950642 + L1ME LINE L1 5482 5588 -533 22 0 0 0 chr4 157338109 157338131 -26950531 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr4 157338959 157338983 -26949679 + AT_rich Low_complexity Low_complexity 1 24 0 428 277 28 7 chr4 157339037 157339178 -26949484 - MIR SINE MIR -36 226 83 198 167 0 0 chr4 157339230 157339266 -26949396 + (TG)n Simple_repeat Simple_repeat 2 37 0 342 241 128 15 chr4 157339270 157339403 -26949259 + L1MC4 LINE L1 7895 8042 0 4419 190 77 34 chr4 157339567 157340195 -26948467 + L1MC1 LINE L1 5186 5883 -450 2364 66 3 0 chr4 157340195 157340499 -26948163 + AluY SINE Alu 1 305 -6 4419 190 77 34 chr4 157340499 157340971 -26947691 + L1MC1 LINE L1 5883 6333 0 2883 151 77 5 chr4 157341255 157341811 -26946851 - L1MA4A LINE L1 -5 6298 5703 24 85 0 0 chr4 157343002 157343061 -26945601 + AT_rich Low_complexity Low_complexity 1 59 0 200 204 41 0 chr4 157343474 157343523 -26945139 + (TAAA)n Simple_repeat Simple_repeat 1 51 0 236 289 31 0 chr4 157343701 157343798 -26944864 + L1MC4 LINE L1 6620 6719 -1323 206 237 10 0 chr4 157343802 157343899 -26944763 + (TA)n Simple_repeat Simple_repeat 1 98 0 324 305 79 23 chr4 157344235 157344412 -26944250 + MER5A DNA MER1_type 2 188 -1 15911 109 8 3 chr4 157345287 157348492 -26940170 - L1PA7 LINE L1 -2 6152 2929 264 333 113 11 chr4 157349821 157349998 -26938664 - MIR SINE MIR -17 245 51 182 418 47 12 chr4 157350610 157350780 -26937882 - MER5B DNA MER1_type -1 177 2 794 327 54 15 chr4 157351444 157351851 -26936811 + L2 LINE L2 2431 2853 -461 337 311 0 0 chr4 157352561 157352651 -26936011 + L1MC4 LINE L1 6614 6703 -1339 2110 96 3 10 chr4 157352919 157353211 -26935451 + AluSg SINE Alu 1 290 -20 315 207 11 83 chr4 157403560 157403695 -26884967 - HERVL40 LTR ERVL -2168 1614 743 431 151 11 0 chr4 157403946 157404039 -26884623 + CT-rich Low_complexity Low_complexity 1 94 0 306 359 60 16 chr4 157405358 157405606 -26883056 + L2 LINE L2 1090 1348 -1966 192 369 25 33 chr4 157405965 157406087 -26882575 + L2 LINE L2 1789 1909 -1405 343 306 65 24 chr4 157406088 157406258 -26882404 + L2 LINE L2 2301 2477 -837 849 209 52 68 chr4 157407244 157407569 -26881093 + MER33 DNA MER1_type 5 324 0 21 36 0 0 chr4 157407609 157407637 -26881025 + AT_rich Low_complexity Low_complexity 1 28 0 299 241 133 63 chr4 157408937 157409095 -26879567 + LTR67 LTR ERVL 2 170 -387 2435 66 0 25 chr4 157409253 157409570 -26879092 - AluY SINE Alu -2 309 1 22 0 0 0 chr4 157409856 157409878 -26878784 + AT_rich Low_complexity Low_complexity 1 22 0 1048 91 22 13 chr4 157410789 157411022 -26877640 + (TAGA)n Simple_repeat Simple_repeat 1 235 0 2355 176 88 4 chr4 157411235 157411700 -26876962 - MLT1D LTR MaLR 0 505 2 21 0 0 0 chr4 157412009 157412030 -26876632 + AT_rich Low_complexity Low_complexity 1 21 0 2159 92 3 10 chr4 157412950 157413242 -26875420 - AluSg SINE Alu -20 290 1 825 124 0 0 chr4 157413493 157413622 -26875040 + (TA)n Simple_repeat Simple_repeat 2 130 0 793 322 54 15 chr4 157414328 157414735 -26873927 - L2 LINE L2 -461 2853 2431 257 333 113 11 chr4 157416181 157416358 -26872304 + MIR SINE MIR 51 245 -17 351 0 0 0 chr4 157418277 157418316 -26870346 + (TA)n Simple_repeat Simple_repeat 1 39 0 243 0 0 0 chr4 157418315 157418342 -26870320 + (CA)n Simple_repeat Simple_repeat 2 28 0 * 22 56 0 0 chr4 157418545 157418581 -26870081 + AT_rich Low_complexity Low_complexity 1 36 0 1238 318 194 20 chr4 157418649 157419579 -26869083 + L2 LINE L2 884 1974 -1340 881 315 82 31 chr4 157419579 157420004 -26868658 + L2 LINE L2 2202 2648 -666 4438 114 98 100 chr4 157420005 157421384 -26867278 - pTR5 LTR ERV1 -5 2433 743 700 342 82 15 chr4 157421384 157422011 -26866651 + L2 LINE L2 2638 3313 0 22 35 0 0 chr4 157422369 157422398 -26866264 + AT_rich Low_complexity Low_complexity 1 29 0 2170 135 0 0 chr4 157422405 157422716 -26865946 - AluSx SINE Alu -1 311 1 22 0 0 0 chr4 157422962 157422984 -26865678 + AT_rich Low_complexity Low_complexity 1 22 0 2929 113 107 0 chr4 157423128 157423578 -26865084 + MER61D LTR ERV1 4 501 0 1076 192 0 0 chr4 157423578 157423760 -26864902 - AluJb SINE Alu -46 266 85 21 71 0 0 chr4 157423947 157423989 -26864673 + AT_rich Low_complexity Low_complexity 1 42 0 685 173 16 16 chr4 157424999 157425126 -26863536 - AluJb SINE Alu -12 300 174 1359 177 90 11 chr4 157425012 157425278 -26863384 - AluJo SINE Alu -25 287 1 7517 26 0 21 chr4 157425416 157426610 -26862052 + L1PA3 LINE L1 4978 6152 -3 192 77 0 0 chr4 157427309 157427335 -26861327 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 878 206 122 93 chr4 157427444 157427822 -26860840 - MLT2C1 LTR ERVL -8 389 1 412 307 113 51 chr4 157428142 157428513 -26860149 + L1ME LINE L1 4885 5278 -868 553 264 45 5 chr4 157428535 157428751 -26859911 + L1ME LINE L1 5329 5550 -616 467 17 17 0 chr4 157429430 157429490 -26859172 + (TA)n Simple_repeat Simple_repeat 1 61 0 2323 78 10 0 chr4 157434276 157434582 -26854080 - AluY SINE Alu -2 309 1 2123 123 7 0 chr4 157434890 157435191 -26853471 + AluSp SINE Alu 1 303 -10 506 228 30 66 chr4 157436525 157436692 -26851970 - L1M4b LINE L1 -6639 220 60 22 0 0 0 chr4 157437079 157437101 -26851561 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr4 157438465 157438502 -26850160 + AT_rich Low_complexity Low_complexity 1 37 0 1384 172 53 103 chr4 157438574 157439010 -26849652 + L1MA9 LINE L1 5858 6271 -41 1583 277 113 14 chr4 157439340 157440348 -26848314 - L1MDa LINE L1 -3863 2677 1573 200 197 0 16 chr4 157440348 157440409 -26848253 + (TATATG)n Simple_repeat Simple_repeat 3 62 0 330 322 41 20 chr4 157440457 157440752 -26847910 - L1MDa LINE L1 -4981 1559 1259 3587 168 8 26 chr4 157442875 157443529 -26845133 - MER4D LTR ERV1 -49 854 213 516 218 0 0 chr4 157443527 157443647 -26845015 + HSAT4 Satellite centromeric 1 120 0 * 1130 188 14 24 chr4 157443643 157443856 -26844806 - MER4D LTR ERV1 -692 211 1 4193 114 22 0 chr4 157443893 157444514 -26844148 + MER41B LTR ERV1 1 635 0 1834 145 28 0 chr4 157444514 157444803 -26843859 + MER41B-int LTR ERV1 1 297 -5649 500 191 122 35 chr4 157444808 157444923 -26843739 + MER4D LTR ERV1 88 212 -660 * 526 207 0 0 chr4 157444919 157445039 -26843623 - HSAT4 Satellite centromeric -2 120 1 * 1073 185 4 68 chr4 157445037 157445308 -26843354 + MER4D LTR ERV1 213 474 -398 3363 161 80 13 chr4 157445308 157446429 -26842233 + MER41B-int LTR ERV1 359 1607 -4339 954 192 0 0 chr4 157446417 157446589 -26842073 + MER41B-int LTR ERV1 1846 2017 -3929 * 3134 140 14 10 chr4 157446585 157447316 -26841346 + MER41B-int LTR ERV1 2167 2946 -3000 * 10624 129 57 36 chr4 157447305 157447699 -26840963 + MER41B-int LTR ERV1 1910 2294 -3652 1925 142 3 7 chr4 157447699 157447988 -26840674 + AluSc SINE Alu 6 293 -16 10624 129 57 36 chr4 157447988 157449950 -26838712 + MER41B-int LTR ERV1 2294 5943 -3 4076 119 11 0 chr4 157449952 157450580 -26838082 + MER41B LTR ERV1 1 635 0 258 279 0 51 chr4 157451418 157451497 -26837165 - L2 LINE L2 -1 3271 3197 282 247 12 12 chr4 157452581 157452662 -26836000 + L1ME1 LINE L1 6075 6155 -11 360 301 66 43 chr4 157453025 157453477 -26835185 + L1M2 LINE L1 1404 2065 -4318 276 263 157 30 chr4 157453668 157453866 -26834796 + L1M2 LINE L1 2384 2624 -3758 264 30 0 0 chr4 157453866 157453899 -26834763 + (CA)n Simple_repeat Simple_repeat 2 34 0 276 263 157 30 chr4 157453899 157453962 -26834700 + L1M2 LINE L1 2624 2678 -3704 293 290 106 32 chr4 157454413 157454913 -26833749 + L1M2 LINE L1 3217 3753 -2629 231 329 0 0 chr4 157455030 157455100 -26833562 - LTR16C LTR ERVL -3 488 419 637 282 61 103 chr4 157455101 157455576 -26833086 + LTR16B LTR ERVL 3 457 -7 920 340 54 26 chr4 157455811 157455838 -26832824 + HERV16 LTR ERVL 218 243 -4753 2227 100 3 3 chr4 157455838 157456149 -26832513 + AluSp SINE Alu 3 313 0 920 340 54 26 chr4 157456149 157456695 -26831967 + HERV16 LTR ERVL 243 807 -4189 1070 313 40 31 chr4 157456793 157457241 -26831421 + HERV16 LTR ERVL 968 1419 -3577 1829 345 59 38 chr4 157457245 157458528 -26830134 + HERV16 LTR ERVL 2069 3096 -1900 246 386 148 6 chr4 157458539 157458891 -26829771 - L2 LINE L2 -424 2890 2489 376 289 208 25 chr4 157458905 157459064 -26829598 - MER5A DNA MER1_type 0 189 2 587 360 44 22 chr4 157459065 157459426 -26829236 - L2 LINE L2 -836 2478 2110 384 22 0 0 chr4 157459545 157459590 -26829072 + (CA)n Simple_repeat Simple_repeat 2 46 0 290 322 17 8 chr4 157460359 157460477 -26828185 + L1M2 LINE L1 4273 4391 -1991 31 0 0 0 chr4 157460866 157460897 -26827765 + AT_rich Low_complexity Low_complexity 1 31 0 709 202 109 6 chr4 157461092 157461202 -26827460 + AluJb SINE Alu 11 108 -204 252 0 0 0 chr4 157461202 157461230 -26827432 + (TA)n Simple_repeat Simple_repeat 2 29 0 709 202 109 6 chr4 157461230 157461302 -26827360 + AluJb SINE Alu 108 212 -100 721 178 15 0 chr4 157461497 157461632 -26827030 + MLT1A1 LTR MaLR 229 365 0 354 215 0 0 chr4 157461634 157461713 -26826949 + L1M4 LINE L1 3821 3899 -2247 238 180 49 49 chr4 157461714 157461728 -26826934 + MER21A LTR ERV1 9 22 -909 387 105 0 0 chr4 157461728 157461785 -26826877 + (TA)n Simple_repeat Simple_repeat 1 57 0 238 180 49 49 chr4 157461785 157461831 -26826831 + MER21A LTR ERV1 21 69 -862 3250 178 35 61 chr4 157461946 157462893 -26825769 + MER21A LTR ERV1 70 915 -16 3046 271 24 12 chr4 157462897 157463958 -26824704 + L1M4 LINE L1 4076 5148 -998 1141 163 42 8 chr4 157463974 157464213 -26824449 - L1MA4A LINE L1 -6 6297 6051 264 321 79 30 chr4 157465636 157465801 -26822861 - L2 LINE L2 -413 2901 2729 31 0 0 0 chr4 157465811 157465842 -26822820 + AT_rich Low_complexity Low_complexity 1 31 0 327 268 123 29 chr4 157465987 157466125 -26822537 + HERV16 LTR ERVL 3538 3688 -2076 335 330 48 24 chr4 157466190 157466399 -26822263 + HERV16 LTR ERVL 3726 3939 -1715 318 50 0 0 chr4 157466598 157466638 -26822024 + (TA)n Simple_repeat Simple_repeat 1 40 0 268 280 21 11 chr4 157466642 157466735 -26821927 + L1MC4 LINE L1 6609 6702 -1340 375 322 61 42 chr4 157466752 157466966 -26821696 + HERV16 LTR ERVL 4044 4261 -1393 307 367 29 7 chr4 157467413 157467552 -26821110 + LTR16C LTR ERVL 97 238 -253 1891 132 0 7 chr4 157467598 157467912 -26820750 - AluSc SINE Alu 0 312 1 438 330 88 47 chr4 157468482 157468694 -26819968 - ERVL LTR ERVL -3200 2564 2362 1763 169 22 30 chr4 157468694 157469056 -26819606 + MER46B DNA MER2_type 1 234 -2 438 330 88 47 chr4 157469056 157469307 -26819355 - ERVL LTR ERVL -3402 2362 2082 367 141 92 28 chr4 157470121 157470263 -26818399 - L1MA9 LINE L1 -4 6308 6034 2218 104 0 0 chr4 157470386 157470684 -26817978 - AluSc SINE Alu -11 298 1 447 314 52 12 chr4 157470777 157471025 -26817637 - MIR SINE MIR -1 261 4 182 220 76 144 chr4 157471890 157472022 -26816640 + MIR3 SINE MIR 82 204 -4 35 0 0 0 chr4 157472321 157472356 -26816306 + AT_rich Low_complexity Low_complexity 1 35 0 2044 87 65 0 chr4 157472549 157472825 -26815837 + AluY SINE Alu 1 294 -17 788 183 8 0 chr4 157472838 157472969 -26815693 + FLAM_C SINE Alu 1 132 -11 737 132 8 23 chr4 157473882 157474011 -26814651 + MSTB1 LTR MaLR 4 130 -302 3596 222 69 17 chr4 157474196 157475195 -26813467 - L1MC3 LINE L1 -7 7778 6728 284 317 12 0 chr4 157475333 157475415 -26813247 + MIR SINE MIR 66 148 -60 22 35 0 0 chr4 157476547 157476576 -26812086 + AT_rich Low_complexity Low_complexity 1 29 0 225 283 47 19 chr4 157476610 157476716 -26811946 + L1ME LINE L1 5522 5630 -491 278 247 35 12 chr4 157476808 157476893 -26811769 + MIR SINE MIR 103 189 -73 21 36 0 0 chr4 157476941 157476969 -26811693 + AT_rich Low_complexity Low_complexity 1 28 0 284 163 20 0 chr4 157478272 157478321 -26810341 - MER53 DNA DNA -139 50 1 701 176 32 80 chr4 157479038 157479225 -26809437 + MLT1A2 LTR MaLR 1 178 -196 1348 179 69 24 chr4 157479262 157479553 -26809109 + THE1C LTR MaLR 72 375 0 669 188 21 28 chr4 157479558 157479702 -26808960 + MLT1A2 LTR MaLR 243 385 -5 340 241 41 75 chr4 157479843 157480097 -26808565 - L1M4 LINE L1 -2710 3436 3145 1415 194 31 3 chr4 157480110 157480403 -26808259 - AluJo SINE Alu -11 301 1 1345 244 116 54 chr4 157480403 157481385 -26807277 - L1M4 LINE L1 -2959 3187 2145 329 237 76 41 chr4 157481591 157481725 -26806937 - L1M4 LINE L1 -3266 2880 2741 398 269 153 19 chr4 157481826 157482094 -26806568 - L1M4 LINE L1 -2890 3256 2953 1127 150 0 6 chr4 157482101 157482313 -26806349 - AluSg/x SINE Alu 0 321 111 1052 236 111 54 chr4 157482582 157482989 -26805673 + HERVL68 LTR ERVL 2670 3099 -2431 312 250 28 32 chr4 157483081 157483241 -26805421 + HERVL68 LTR ERVL 2724 4674 -254 661 312 52 4 chr4 157483263 157483532 -26805130 + HERVL68 LTR ERVL 5246 5527 -3 239 284 95 11 chr4 157483884 157483979 -26804683 - LTR68 LTR ERV1 -580 160 58 2202 123 0 0 chr4 157483997 157484298 -26804364 + AluSx SINE Alu 1 301 -11 272 238 48 0 chr4 157484615 157484678 -26803984 - MLT1H LTR MaLR -28 521 456 582 307 60 19 chr4 157484764 157484979 -26803683 - MLT1H LTR MaLR -243 306 83 409 300 144 20 chr4 157485141 157485587 -26803075 - L1MC/D LINE L1 -302 5819 5318 24 77 0 0 chr4 157485760 157485812 -26802850 + AT_rich Low_complexity Low_complexity 1 52 0 2174 200 69 11 chr4 157486362 157486826 -26801836 - MLT1F1 LTR MaLR 0 567 77 386 296 11 51 chr4 157486927 157487103 -26801559 + L1ME3A LINE L1 4039 4207 -1939 696 285 105 18 chr4 157487289 157487727 -26800935 + L1ME3A LINE L1 4382 4857 -1289 622 278 93 36 chr4 157487823 157488179 -26800483 + L1ME3A LINE L1 5678 6053 -117 22 35 0 0 chr4 157488426 157488455 -26800207 + AT_rich Low_complexity Low_complexity 1 29 0 197 316 34 68 chr4 157490291 157490326 -26798336 - MIR SINE MIR -50 212 177 1865 217 75 49 chr4 157490326 157490963 -26797699 + MLT1E1 LTR MaLR 1 654 0 197 316 34 68 chr4 157490963 157491044 -26797618 - MIR SINE MIR -85 177 100 521 319 58 26 chr4 157491328 157491554 -26797108 - MIR SINE MIR -25 237 5 1178 302 107 80 chr4 157491689 157492166 -26796496 - L2 LINE L2 -13 3300 2837 1858 131 0 4 chr4 157492166 157492441 -26796221 + AluSx SINE Alu 9 282 -30 1178 302 107 80 chr4 157492441 157492500 -26796162 - L2 LINE L2 -476 2837 2781 3329 120 10 0 chr4 157492500 157493008 -26795654 - MER75 DNA T2_type 0 514 2 1178 302 107 80 chr4 157493008 157493350 -26795312 - L2 LINE L2 -532 2781 2377 2009 112 0 0 chr4 157493350 157493617 -26795045 + AluSg SINE Alu 32 298 -12 1178 302 107 80 chr4 157493617 157493850 -26794812 - L2 LINE L2 -936 2377 2152 223 330 110 57 chr4 157493967 157494176 -26794486 - L2 LINE L2 -3088 226 7 1592 272 70 17 chr4 157495930 157496573 -26792089 - L1ME2 LINE L1 -10 6154 5478 342 237 0 10 chr4 157496575 157496672 -26791990 - L1MB8 LINE L1 -2 6176 6081 895 253 94 40 chr4 157496672 157497067 -26791595 + LTR52 LTR ERVL 1 416 -5 1444 194 62 29 chr4 157497071 157497457 -26791205 - L1MB8 LINE L1 -93 6085 5687 1935 190 61 8 chr4 157497457 157497836 -26790826 + MSTB LTR MaLR 2 400 -26 699 216 10 26 chr4 157497837 157498004 -26790658 - L1MB8 LINE L1 -543 5637 5468 266 50 25 0 chr4 157498157 157498197 -26790465 + (TA)n Simple_repeat Simple_repeat 2 42 0 262 293 0 0 chr4 157498612 157498694 -26789968 - L1MC4 LINE L1 -1346 6696 6615 21 36 0 0 chr4 157498697 157498725 -26789937 + AT_rich Low_complexity Low_complexity 1 28 0 336 24 0 0 chr4 157498751 157498792 -26789870 + (CA)n Simple_repeat Simple_repeat 2 42 0 288 130 0 0 chr4 157499461 157499507 -26789155 + (TA)n Simple_repeat Simple_repeat 2 47 0 1946 98 11 0 chr4 157500329 157500594 -26788068 + AluY SINE Alu 32 299 -12 23 33 0 0 chr4 157501308 157501338 -26787324 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 157501427 157501448 -26787214 + AT_rich Low_complexity Low_complexity 1 21 0 779 318 71 7 chr4 157502205 157502485 -26786177 - MLT1H LTR MaLR -251 298 1 890 305 90 9 chr4 157502490 157502824 -26785838 - L2 LINE L2 -1147 2167 1807 7541 193 125 13 chr4 157503043 157504621 -26784041 + MER52A LTR ERV1 1 1755 0 2077 321 155 10 chr4 157504636 157505854 -26782808 - L2 LINE L2 -1885 1429 35 1684 340 3 19 chr4 157506065 157506435 -26782227 - THE1B LTR MaLR 0 364 1 236 206 15 29 chr4 157506574 157506642 -26782020 - L1MC4 LINE L1 -2035 5773 5707 183 162 0 0 chr4 157507459 157507496 -26781166 + T-rich Low_complexity Low_complexity 3 39 0 22 56 0 0 chr4 157507620 157507656 -26781006 + AT_rich Low_complexity Low_complexity 1 36 0 1293 246 86 35 chr4 157507704 157508197 -26780465 + MER39 LTR ERV1 6 707 0 24 32 0 0 chr4 157508401 157508432 -26780230 + AT_rich Low_complexity Low_complexity 1 31 0 40 21 0 0 chr4 157508611 157508658 -26780004 + AT_rich Low_complexity Low_complexity 1 47 0 345 345 79 0 chr4 157508731 157508896 -26779766 - MIR SINE MIR -28 234 57 936 168 67 67 chr4 157509332 157509541 -26779121 + AluJo SINE Alu 3 211 -101 431 279 40 55 chr4 157510149 157510225 -26778437 - L1ME1 LINE L1 -67 6099 6023 2282 81 0 7 chr4 157510225 157510535 -26778127 + AluY SINE Alu 1 308 -3 431 279 40 55 chr4 157510535 157510659 -26778003 - L1ME1 LINE L1 -143 6023 5902 326 191 67 5 chr4 157510815 157510927 -26777735 - L1MC4 LINE L1 -1339 6983 1994 281 113 62 10 chr4 157510933 157511030 -26777632 + (TA)n Simple_repeat Simple_repeat 2 103 0 218 286 36 0 chr4 157511113 157511197 -26777465 + (CAGAGA)n Simple_repeat Simple_repeat 4 90 0 220 87 29 43 chr4 157511876 157511945 -26776717 + (TA)n Simple_repeat Simple_repeat 2 69 0 1884 202 44 7 chr4 157512165 157512576 -26776086 + MSTB LTR MaLR 1 426 0 222 91 0 0 chr4 157512988 157513021 -26775641 + (GA)n Simple_repeat Simple_repeat 1 33 0 1742 225 76 11 chr4 157513146 157513607 -26775055 - MLT1F1 LTR MaLR -9 558 60 632 263 300 7 chr4 157513868 157514168 -26774494 - LTR50 LTR ERVL -315 480 93 436 350 85 17 chr4 157514569 157515075 -26773587 - ERVL LTR ERVL -215 5312 4723 867 312 32 75 chr4 157515186 157515743 -26772919 - ERVL LTR ERVL -3965 1799 1267 532 330 60 0 chr4 157515945 157516145 -26772517 - LTR50 LTR ERVL -583 212 1 324 207 46 11 chr4 157516145 157516227 -26772435 - Charlie2a DNA MER1_type -30 2832 2748 406 208 5 112 chr4 157516228 157516425 -26772237 - Charlie2a DNA MER1_type -1848 1014 839 347 301 36 30 chr4 157516558 157516724 -26771938 - Charlie2a DNA MER1_type -2385 397 231 361 259 54 54 chr4 157517222 157517369 -26771293 - Charlie2a DNA MER1_type -2634 148 2 2488 114 8 11 chr4 157518061 157518437 -26770225 + THE1C LTR MaLR 1 375 0 1294 291 134 15 chr4 157518805 157519282 -26769380 + MLT1H LTR MaLR 13 546 -3 1205 164 7 101 chr4 157519562 157519679 -26768983 - L1MA7 LINE L1 -234 6057 5931 2166 70 0 3 chr4 157519679 157519965 -26768697 - L1PA5 LINE L1 -8 6146 5862 1205 164 7 101 chr4 157519965 157520145 -26768517 - L1MA7 LINE L1 -360 5931 5788 994 130 70 35 chr4 157520145 157520374 -26768288 + L1MA7 LINE L1 6054 6291 0 2000 178 15 7 chr4 157520728 157521138 -26767524 - L1MB4 LINE L1 -12 6168 5756 210 377 66 0 chr4 157521156 157521278 -26767384 - L2 LINE L2 -621 2693 2564 22 0 0 0 chr4 157522012 157522034 -26766628 + AT_rich Low_complexity Low_complexity 1 22 0 23 97 0 0 chr4 157522072 157522144 -26766518 + AT_rich Low_complexity Low_complexity 1 72 0 252 0 0 0 chr4 157523277 157523305 -26765357 + (CA)n Simple_repeat Simple_repeat 1 28 0 3316 34 3 0 chr4 157523471 157523858 -26764804 + MER11D LTR ERVK 1 388 -509 5970 117 27 59 chr4 157523871 157524798 -26763864 - MER11D LTR ERVK 0 897 1 1338 206 70 20 chr4 157524890 157525401 -26763261 - MER67C LTR ERV1 -29 485 1 197 298 0 0 chr4 157525512 157525559 -26763103 - L2 LINE L2 -25 3247 3201 2024 171 19 16 chr4 157525694 157526057 -26762605 + THE1B LTR MaLR 1 364 0 9988 109 34 28 chr4 157526057 157527627 -26761035 + THE1B-int LTR MaLR 1 1580 0 2396 111 16 32 chr4 157527627 157527997 -26760665 + THE1B LTR MaLR 1 364 0 226 135 77 0 chr4 157528255 157528307 -26760355 - MER97b DNA MER1_type? -35 1018 963 2213 122 3 0 chr4 157528331 157528643 -26760019 + AluSq SINE Alu 1 313 0 21 36 0 0 chr4 157528700 157528728 -26759934 + AT_rich Low_complexity Low_complexity 1 28 0 1505 231 87 69 chr4 157528734 157529241 -26759421 - MER97c DNA MER1_type? -526 564 49 25 0 0 0 chr4 157531421 157531446 -26757216 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr4 157531546 157531576 -26757086 + AT_rich Low_complexity Low_complexity 1 30 0 254 333 34 28 chr4 157532312 157532489 -26756173 - L1ME LINE L1 -5891 179 2 264 122 0 0 chr4 157532536 157532577 -26756085 + (TG)n Simple_repeat Simple_repeat 2 42 0 2460 66 0 3 chr4 157532872 157533175 -26755487 + AluY SINE Alu 1 302 -9 664 306 63 23 chr4 157533197 157533998 -26754664 - L1ME LINE L1 -3432 2648 1856 483 237 28 74 chr4 157534074 157534289 -26754373 - L1ME LINE L1 -4554 1526 1322 370 275 91 72 chr4 157534476 157535081 -26753581 - L1ME LINE L1 -4901 1181 688 899 263 50 31 chr4 157535178 157535564 -26753098 - MLT2C1 LTR ERVL -8 655 1 317 276 96 21 chr4 157536528 157536748 -26751914 - L1ME3A LINE L1 -224 5946 5710 26 74 0 0 chr4 157536985 157537039 -26751623 + AT_rich Low_complexity Low_complexity 1 54 0 23 0 0 0 chr4 157537563 157537586 -26751076 + AT_rich Low_complexity Low_complexity 1 23 0 585 198 9 9 chr4 157538216 157538327 -26750335 + FLAM_A SINE Alu 2 112 -30 3248 248 101 28 chr4 157538890 157542080 -26746582 - L1MCb LINE L1 -3135 3429 2 23 0 0 0 chr4 157543136 157543159 -26745503 + AT_rich Low_complexity Low_complexity 1 23 0 427 325 51 5 chr4 157543492 157543689 -26744973 - MIR SINE MIR -54 208 3 1241 278 72 0 chr4 157543892 157544227 -26744435 + MLT1A1 LTR MaLR 1 359 -6 2926 119 49 74 chr4 157544317 157544870 -26743792 + MER4B LTR ERV1 1 539 -71 3165 164 27 10 chr4 157544870 157545097 -26743565 - MER1A DNA MER1_type -2173 529 307 4623 112 30 0 chr4 157545097 157545768 -26742894 - LTR8 LTR ERV1 0 691 1 3165 164 27 10 chr4 157545768 157546060 -26742602 - MER1A DNA MER1_type -2395 307 1 555 118 0 32 chr4 157546060 157546141 -26742521 + MER4E LTR ERV1 702 779 0 42 20 0 0 chr4 157546567 157546616 -26742046 + AT_rich Low_complexity Low_complexity 1 49 0 1963 141 24 43 chr4 157547320 157547689 -26740973 - THE1B LTR MaLR -2 362 1 6862 97 8 3 chr4 157547689 157548629 -26740033 - THE1B-int LTR MaLR 0 1580 636 275 79 0 0 chr4 157548631 157548669 -26739993 - MSTA LTR MaLR -390 38 1 252 228 0 0 chr4 157548838 157548895 -26739767 + CT-rich Low_complexity Low_complexity 2 58 0 23 54 0 0 chr4 157549116 157549153 -26739509 + AT_rich Low_complexity Low_complexity 1 37 0 3757 151 27 31 chr4 157549647 157550377 -26738285 - LTR8A LTR ERV1 0 727 1 1941 149 60 41 chr4 157550550 157551193 -26737469 + LTR34 LTR ERV1 1 699 0 270 160 0 0 chr4 157553240 157553290 -26735372 + (TG)n Simple_repeat Simple_repeat 1 50 0 1464 102 5 0 chr4 157553700 157553915 -26734747 - pTR5 LTR ERV1 -2046 392 177 338 212 71 71 chr4 157553915 157554028 -26734634 - LTR30 LTR ERV1 -73 721 544 3891 156 39 55 chr4 157554028 157555003 -26733659 - pTR5 LTR ERV1 -419 2019 741 594 332 53 52 chr4 157556084 157556741 -26731921 - L1MEd LINE L1 -5458 661 4 423 297 7 29 chr4 157556934 157557072 -26731590 - L2 LINE L2 -20 3293 3159 2249 216 94 64 chr4 157557643 157558444 -26730218 - LTR1B LTR ERV1 0 826 2 34 72 0 0 chr4 157558708 157558777 -26729885 + AT_rich Low_complexity Low_complexity 1 69 0 243 152 0 0 chr4 157559887 157559933 -26728729 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 1713 181 49 22 chr4 157562573 157562938 -26725724 - THE1C LTR MaLR 0 375 1 23724 168 27 17 chr4 157563294 157564046 -26724616 - L1PA10 LINE L1 -2 7604 6861 2350 80 0 17 chr4 157564046 157564348 -26724314 - AluY SINE Alu -14 297 1 23724 168 27 17 chr4 157564348 157569033 -26719629 - L1PA10 LINE L1 -745 6861 1327 2064 146 3 0 chr4 157569033 157569327 -26719335 + AluSx SINE Alu 1 295 -17 23724 168 27 17 chr4 157569327 157569694 -26718968 - L1PA10 LINE L1 -6279 1327 965 262 273 0 0 chr4 157569696 157569751 -26718911 - AluS SINE Alu -242 59 5 872 196 0 62 chr4 157569761 157569985 -26718677 - L1 LINE L1 -2361 4021 3812 * 5347 26 0 0 chr4 157569983 157570631 -26718031 - L1P LINE L1 -3159 2987 2340 17441 43 0 0 chr4 157570648 157573581 -26715081 + L1PA4 LINE L1 3220 6154 -1 1189 216 71 18 chr4 157573600 157574122 -26714540 - L1 LINE L1 -3633 2749 2201 1293 284 61 39 chr4 157574171 157575122 -26713540 - L1 LINE L1 -4291 2091 1029 1736 115 51 0 chr4 157575124 157575377 -26713285 - AluY SINE Alu -4 307 42 630 263 109 92 chr4 157575383 157575851 -26712811 - LTR33A LTR ERVL -46 477 2 797 314 114 31 chr4 157576959 157577571 -26711091 + MLT2F LTR ERVL 1 663 0 701 347 27 39 chr4 157577811 157578223 -26710439 + ERVL-F LTR ERVL 282 688 -5076 332 311 44 15 chr4 157578265 157578400 -26710262 + ERVL-F LTR ERVL 828 966 -4798 505 268 14 70 chr4 157578598 157578811 -26709851 + ERVL-F LTR ERVL 1201 1401 -4253 1751 142 10 24 chr4 157578822 157579110 -26709552 - THE1B LTR MaLR -6 358 75 1931 294 103 27 chr4 157579111 157579971 -26708691 + ERVL-F LTR ERVL 1981 2906 -2858 1478 296 71 25 chr4 157579967 157580831 -26707831 + ERVL-F LTR ERVL 3685 4602 -883 * 2533 177 63 47 chr4 157580831 157581607 -26707055 - L1MA5 LINE L1 -191 6109 5254 730 139 26 98 chr4 157581618 157581812 -26706850 + L1MA9 LINE L1 6133 6312 0 772 172 7 21 chr4 157582216 157582361 -26706301 + MLT1A1 LTR MaLR 10 152 -213 614 130 40 0 chr4 157582367 157582467 -26706195 + MLT1A1 LTR MaLR 267 370 -4 623 343 33 6 chr4 157582478 157582843 -26705819 + ERVL-F LTR ERVL 5018 5392 -262 388 181 28 0 chr4 157583190 157583262 -26705400 + MLT2B1 LTR ERVL 6 79 -549 778 349 52 30 chr4 157583498 157583997 -26704665 - L2 LINE L2 0 3313 2804 * 1019 313 63 19 chr4 157583993 157584421 -26704241 - L2 LINE L2 -1588 1726 1280 2197 129 0 3 chr4 157584459 157584769 -26703893 + AluSx SINE Alu 1 309 -3 441 308 50 44 chr4 157584787 157584969 -26703693 - MER5A DNA MER1_type -5 184 2 1897 132 35 0 chr4 157586470 157586759 -26701903 + AluY SINE Alu 1 299 -12 341 306 128 41 chr4 157586963 157587479 -26701183 - L1M4 LINE L1 -2213 3933 3373 466 359 109 14 chr4 157587814 157588385 -26700277 - L1M4 LINE L1 -3132 3014 2390 2245 145 13 11 chr4 157588958 157589337 -26699325 - L1MA4A LINE L1 -256 6047 5668 539 315 61 5 chr4 157589766 157589979 -26698683 - LTR16B LTR ERVL 0 464 240 3349 265 72 15 chr4 157589987 157591184 -26697478 - L1MCb LINE L1 -1278 5286 4022 1524 251 49 33 chr4 157591184 157591610 -26697052 + MLT2B1 LTR ERVL 69 501 -19 1435 246 113 13 chr4 157591610 157592237 -26696425 - L1MCb LINE L1 -2974 3590 2901 * 2367 339 68 35 chr4 157592216 157593520 -26695142 - L1MCb LINE L1 -4852 1193 5 305 302 93 16 chr4 157593785 157593914 -26694748 + L2 LINE L2 3166 3304 -9 181 257 171 50 chr4 157594226 157594366 -26694296 + MIR SINE MIR 96 252 -10 561 240 233 94 chr4 157594631 157595065 -26693597 + L2 LINE L2 2820 3313 0 1030 206 112 69 chr4 157595898 157596247 -26692415 + MLT2D LTR ERVL 1 364 -50 195 333 167 20 chr4 157596365 157596467 -26692195 + L2 LINE L2 3197 3313 0 23 33 0 0 chr4 157597715 157597745 -26690917 + AT_rich Low_complexity Low_complexity 1 30 0 1292 233 138 93 chr4 157597959 157598741 -26689921 - LTR1B LTR ERV1 -17 1003 1 511 263 77 65 chr4 157599147 157599470 -26689192 - L2 LINE L2 0 3313 2987 420 232 32 0 chr4 157599556 157599651 -26689011 + MER5A DNA MER1_type 49 146 -43 280 282 23 8 chr4 157600126 157600257 -26688405 + L1MC4a LINE L1 7043 7175 -633 2143 108 10 0 chr4 157600793 157601081 -26687581 - AluSg SINE Alu -19 291 1 303 325 60 40 chr4 157601254 157601506 -26687156 + L1ME LINE L1 3476 3732 -2414 267 311 72 19 chr4 157601665 157601874 -26686788 + L1ME LINE L1 4936 5155 -991 417 297 108 23 chr4 157601936 157602434 -26686228 + L1ME LINE L1 5238 5799 -322 297 0 0 0 chr4 157602732 157602765 -26685897 + (TA)n Simple_repeat Simple_repeat 1 33 0 1706 149 82 37 chr4 157602922 157603277 -26685385 - THE1C LTR MaLR -4 371 1 360 43 0 0 chr4 157603453 157603499 -26685163 + (TG)n Simple_repeat Simple_repeat 2 47 0 237 246 0 0 chr4 157603875 157603944 -26684718 + HAL1b LINE L1 682 750 -598 1076 276 85 79 chr4 157604404 157604627 -26684035 + L2 LINE L2 1200 1420 -1894 1800 172 3 3 chr4 157604627 157604924 -26683738 - AluJb SINE Alu -15 297 1 1076 276 85 79 chr4 157604924 157605360 -26683302 + L2 LINE L2 1420 1863 -1451 365 299 52 39 chr4 157605365 157605519 -26683143 + L2 LINE L2 1992 2147 -1167 485 319 32 40 chr4 157605524 157605775 -26682887 + L2 LINE L2 3062 3310 -3 2224 112 0 0 chr4 157606100 157606396 -26682266 + AluSg SINE Alu 1 296 -14 22 56 0 0 chr4 157606798 157606834 -26681828 + AT_rich Low_complexity Low_complexity 1 36 0 23 86 0 0 chr4 157607061 157607119 -26681543 + AT_rich Low_complexity Low_complexity 1 58 0 24 32 0 0 chr4 157607881 157607912 -26680750 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr4 157608196 157608227 -26680435 + AT_rich Low_complexity Low_complexity 1 31 0 219 305 91 81 chr4 157658552 157658850 -26629812 - L2 LINE L2 -1 3271 2971 184 200 44 0 chr4 157659357 157659402 -26629260 + MIR3 SINE MIR 119 165 -43 2656 198 24 52 chr4 157659502 157659912 -26628750 - L1MB5 LINE L1 -266 5908 5488 2228 110 3 10 chr4 157659912 157660222 -26628440 - AluSq SINE Alu -3 310 3 2656 198 24 52 chr4 157660222 157660437 -26628225 - L1MB5 LINE L1 -686 5488 5268 1866 159 7 0 chr4 157660437 157660727 -26627935 - AluSx SINE Alu -20 292 1 2656 198 24 52 chr4 157660727 157661028 -26627634 - L1MB5 LINE L1 -906 5268 5008 2129 94 4 4 chr4 157661259 157661535 -26627127 + AluSx SINE Alu 13 288 -24 423 0 0 0 chr4 157661539 157661586 -26627076 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 1838 180 7 0 chr4 157661589 157661889 -26626773 + AluJb SINE Alu 1 302 -10 425 256 100 43 chr4 157662431 157662661 -26626001 + MIR SINE MIR 6 248 -14 200 207 207 24 chr4 157662966 157663048 -26625614 + L2 LINE L2 3168 3264 -8 1903 100 4 0 chr4 157663419 157663668 -26624994 - AluSp SINE Alu -15 298 49 444 77 0 0 chr4 157665553 157665618 -26623044 + (CA)n Simple_repeat Simple_repeat 1 65 0 1100 263 89 69 chr4 157665807 157666000 -26622662 + MLT1E1 LTR MaLR 60 248 -406 3970 61 2 45 chr4 157666000 157666574 -26622088 + L1PA8 LINE L1 5624 6172 0 1100 263 89 69 chr4 157666574 157666961 -26621701 + MLT1E1 LTR MaLR 248 652 -2 5663 32 0 0 chr4 157667515 157668180 -26620482 - L1PA3 LINE L1 -2 6153 5489 2143 20 0 0 chr4 157668180 157668536 -26620126 + L1PA3 LINE L1 5138 5493 -662 217 377 58 14 chr4 157669061 157669199 -26619463 - MIR SINE MIR -56 206 63 22 0 0 0 chr4 157669887 157669909 -26618753 + AT_rich Low_complexity Low_complexity 1 22 0 32 26 0 0 chr4 157670002 157670041 -26618621 + AT_rich Low_complexity Low_complexity 1 39 0 455 296 171 7 chr4 157670869 157671021 -26617641 - MER5A DNA MER1_type 0 189 13 1839 212 21 66 chr4 157671480 157672009 -26616653 - MLT1D LTR MaLR 0 505 1 307 292 22 0 chr4 157672154 157672243 -26616419 - L2 LINE L2 0 3272 3182 853 324 78 8 chr4 157672249 157672622 -26616040 - L2 LINE L2 -5 3308 2910 1345 222 53 70 chr4 157673082 157673555 -26615107 + MLT1C LTR MaLR 1 465 -2 376 317 24 12 chr4 157673960 157674124 -26614538 - L1ME2 LINE L1 -10 6154 5989 1003 290 65 20 chr4 157674143 157674601 -26614061 - L1ME2 LINE L1 -261 5903 5425 546 0 40 0 chr4 157675754 157675828 -26612834 + (TCTA)n Simple_repeat Simple_repeat 1 77 0 533 211 37 0 chr4 157675959 157676068 -26612594 + Tigger5 DNA MER2_type 2211 2323 0 471 62 0 0 chr4 157676294 157676358 -26612304 - Alu SINE Alu -7 303 240 26 50 0 0 chr4 157677566 157677606 -26611056 + AT_rich Low_complexity Low_complexity 1 40 0 28 79 0 0 chr4 157677880 157677943 -26610719 + AT_rich Low_complexity Low_complexity 1 63 0 31 76 0 0 chr4 157678335 157678401 -26610261 + AT_rich Low_complexity Low_complexity 1 66 0 1546 210 44 16 chr4 157678925 157679291 -26609371 - MLT1B LTR MaLR -2 388 13 341 336 14 62 chr4 157679357 157679565 -26609097 + L2 LINE L2 1959 2156 -1158 288 369 82 31 chr4 157679646 157679841 -26608821 + L2 LINE L2 2365 2569 -745 3053 282 36 11 chr4 157679987 157681219 -26607443 + L1M4 LINE L1 2528 3791 -2355 402 210 167 7 chr4 157681216 157681354 -26607308 - L1M4 LINE L1 -2170 3976 3817 * 1151 108 32 5 chr4 157681355 157681540 -26607122 + L1PA13 LINE L1 5974 6163 0 1066 279 10 3 chr4 157681547 157681848 -26606814 - L1ME LINE L1 -589 5577 5275 1215 200 70 17 chr4 157681874 157682766 -26605896 + L1MC2 LINE L1 5347 6344 0 882 297 97 50 chr4 157683276 157683463 -26605199 + MLT1H LTR MaLR 39 216 -333 15866 70 18 0 chr4 157683463 157686381 -26602281 + L1PA6 LINE L1 3219 6152 -2 882 297 97 50 chr4 157686381 157686678 -26601984 + MLT1H LTR MaLR 216 546 -3 26 0 0 0 chr4 157686892 157686918 -26601744 + AT_rich Low_complexity Low_complexity 1 26 0 1479 234 23 71 chr4 157687010 157687528 -26601134 - L1MA9 LINE L1 -38 6274 5782 183 205 0 0 chr4 157687533 157687572 -26601090 + (CA)n Simple_repeat Simple_repeat 2 40 0 321 236 11 0 chr4 157687620 157687709 -26600953 - L1MA9 LINE L1 -502 5789 5700 * 1512 179 25 8 chr4 157687704 157687838 -26600824 - L1MA9 LINE L1 -1341 4805 4675 312 27 0 0 chr4 157687838 157687875 -26600787 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 1512 179 25 8 chr4 157687875 157688097 -26600565 - L1MA9 LINE L1 -1471 4675 4443 607 187 45 0 chr4 157688099 157688233 -26600429 + L1M4c LINE L1 2412 2551 -4298 1090 113 0 0 chr4 157688233 157688384 -26600278 + AluSg/x SINE Alu 154 304 -6 1005 263 14 28 chr4 157688412 157688879 -26599783 + L1M4c LINE L1 2496 2964 -3886 2132 117 0 0 chr4 157688913 157689204 -26599458 + AluSg SINE Alu 1 291 -19 23 54 0 0 chr4 157690902 157690939 -26597723 + AT_rich Low_complexity Low_complexity 1 37 0 477 34 0 0 chr4 157691327 157691386 -26597276 + (TG)n Simple_repeat Simple_repeat 2 60 0 37 23 0 0 chr4 157691603 157691647 -26597015 + AT_rich Low_complexity Low_complexity 1 44 0 1469 216 157 31 chr4 157691797 157692255 -26596407 - MLT2B1 LTR ERVL 0 520 5 280 381 8 16 chr4 157692257 157692383 -26596279 - MER5A DNA MER1_type -2 187 63 280 250 98 45 chr4 157692292 157692404 -26596258 + MER5A DNA MER1_type 47 164 -25 4217 166 19 8 chr4 157692738 157693483 -26595179 + Tigger2 DNA MER2_type 2 754 -1964 917 174 161 27 chr4 157693540 157693764 -26594898 + Tigger2 DNA MER2_type 2465 2718 0 22 35 0 0 chr4 157695403 157695432 -26593230 + AT_rich Low_complexity Low_complexity 1 29 0 29 90 0 0 chr4 157695652 157695730 -26592932 + AT_rich Low_complexity Low_complexity 1 78 0 23 54 0 0 chr4 157696104 157696141 -26592521 + AT_rich Low_complexity Low_complexity 1 37 0 10999 97 3 5 chr4 157696537 157698123 -26590539 - L1PA7 LINE L1 -1746 4400 2818 6685 75 7 0 chr4 157698126 157699851 -26588811 + L1PA7 LINE L1 4397 6147 -7 28 0 0 0 chr4 157699851 157699879 -26588783 + AT_rich Low_complexity Low_complexity 1 28 0 1775 154 11 0 chr4 157699917 157700190 -26588472 - AluSx SINE Alu -36 276 1 26 30 0 0 chr4 157700476 157700509 -26588153 + AT_rich Low_complexity Low_complexity 1 33 0 379 323 112 50 chr4 157700513 157701070 -26587592 - L2 LINE L2 0 3313 2730 225 65 0 0 chr4 157702293 157702324 -26586338 + (CA)n Simple_repeat Simple_repeat 2 32 0 505 322 45 15 chr4 157702462 157702661 -26586001 + MIR SINE MIR 57 261 -1 23 33 0 0 chr4 157702820 157702850 -26585812 + AT_rich Low_complexity Low_complexity 1 30 0 999 153 38 14 chr4 157702954 157703163 -26585499 - L1M4 LINE L1 -1316 4830 4617 194 116 23 0 chr4 157703389 157703432 -26585230 + (TTAA)n Simple_repeat Simple_repeat 2 45 0 228 224 40 26 chr4 157703960 157704036 -26584626 + L1MC4 LINE L1 6626 6702 -1340 26 30 0 0 chr4 157704390 157704423 -26584239 + AT_rich Low_complexity Low_complexity 1 33 0 2133 118 14 0 chr4 157704624 157704921 -26583741 + AluSx SINE Alu 1 301 -11 502 348 20 5 chr4 157705134 157705338 -26583324 - L1M3d LINE L1 -5009 882 676 648 306 81 63 chr4 157705485 157706136 -26582526 - L1M3d LINE L1 -5225 666 4 261 197 0 42 chr4 157706267 157706338 -26582324 + GA-rich Low_complexity Low_complexity 6 73 0 424 345 75 35 chr4 157707842 157708187 -26580475 + L1ME3A LINE L1 964 1322 -5220 254 291 149 0 chr4 157708396 157708530 -26580132 + L1ME3A LINE L1 1623 1776 -4764 379 314 69 72 chr4 157708531 157708778 -26579884 + L1ME3A LINE L1 2324 2570 -4151 237 33 0 0 chr4 157708778 157708808 -26579854 + (CA)n Simple_repeat Simple_repeat 2 31 0 379 314 69 72 chr4 157708808 157708825 -26579837 + L1ME3A LINE L1 2570 2586 -4135 2503 147 59 2 chr4 157708825 157709248 -26579414 - MER83 LTR ERV1 -1 447 1 379 314 69 72 chr4 157709248 157709387 -26579275 + L1ME3A LINE L1 2586 2727 -3994 294 228 0 0 chr4 157709473 157709526 -26579136 + MER76 LTR ERV 5 57 -631 898 214 0 36 chr4 157709526 157709718 -26578944 + MER6B DNA MER2_type 3 187 -23 569 210 50 0 chr4 157709718 157709837 -26578825 + MER76 LTR ERV 232 356 -332 * 6976 177 9 2 chr4 157709834 157711051 -26577611 + Tigger1 DNA MER2_type 7 1231 -1187 739 147 28 0 chr4 157711064 157711207 -26577455 + Tigger1 DNA MER2_type 2187 2333 -85 * 6970 146 25 4 chr4 157711195 157712343 -26576319 + Tigger1 DNA MER2_type 1247 2418 0 1133 254 23 35 chr4 157712343 157712682 -26575980 + MER76 LTR ERV 354 688 0 321 276 165 15 chr4 157712689 157712950 -26575712 + L1ME3A LINE L1 2754 3053 -3487 * 1361 280 88 9 chr4 157712932 157713514 -26575148 + L1ME3A LINE L1 5932 6559 -5 475 289 86 0 chr4 157714117 157714269 -26574393 + MLT2E LTR ERVL 21 185 -443 1003 176 0 20 chr4 157714356 157714560 -26574102 - AluSg/x SINE Alu 0 312 113 2078 123 0 25 chr4 157714703 157715020 -26573642 - AluSx SINE Alu 0 312 4 194 134 15 90 chr4 157716232 157716299 -26572363 - L3 LINE CR1 -869 708 647 22 0 0 0 chr4 157717790 157717812 -26570850 + AT_rich Low_complexity Low_complexity 1 22 0 201 74 0 0 chr4 157718001 157718028 -26570634 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8172 53 1 0 chr4 157718207 157719172 -26569490 + LTR5 LTR ERVK 1 966 -3 2314 33 0 0 chr4 157719175 157719447 -26569215 + HERVK LTR ERVK 1 272 -6971 * 7789 22 1 3 chr4 157719427 157720342 -26568320 + HERVK LTR ERVK 421 1333 -5910 655 49 0 0 chr4 157720342 157720424 -26568238 - LTR5 LTR ERVK -887 82 1 1817 10 0 0 chr4 157720424 157720626 -26568036 + HERVK LTR ERVK 1132 1333 -5910 628 61 0 0 chr4 157720626 157720708 -26567954 - LTR5 LTR ERVK -887 82 1 498 184 10 19 chr4 157721203 157721306 -26567356 + Ricksha DNA DNA 365 466 -788 451 166 10 31 chr4 157721307 157721416 -26567246 + MLT2B3 LTR ERVL 390 535 -19 257 61 163 0 chr4 157721443 157721492 -26567170 + MLT2B1 LTR ERVL 464 520 0 4827 74 41 25 chr4 157721573 157722250 -26566412 + LTR12 LTR ERV1 1 688 0 19925 106 11 13 chr4 157722274 157725194 -26563468 + Harlequin LTR ERV1 58 2972 -5427 1827 123 23 32 chr4 157725193 157725743 -26562919 + Harlequin LTR ERV1 713 4974 -3425 * 1664 114 33 18 chr4 157725730 157726122 -26562540 + HERV17 LTR ERV1 1275 1720 -5176 * 4602 112 2 0 chr4 157726117 157726759 -26561903 + HERV17 LTR ERV1 7757 8399 0 5013 82 7 35 chr4 157726759 157727467 -26561195 + LTR12 LTR ERV1 1 688 0 267 175 67 25 chr4 157727771 157727891 -26560771 + (TATAA)n Simple_repeat Simple_repeat 5 129 0 21 36 0 0 chr4 157729546 157729574 -26559088 + AT_rich Low_complexity Low_complexity 1 28 0 322 299 23 0 chr4 157730115 157730202 -26558460 - MER63 DNA MER1_type 0 1061 973 307 337 120 17 chr4 157730233 157730408 -26558254 + MER68 LTR ERV1 404 562 0 504 77 0 0 chr4 157730431 157730446 -26558216 + (CCTG)n Simple_repeat Simple_repeat 1 93 0 504 77 0 0 chr4 157730446 157730524 -26558138 + (CCTG)n Simple_repeat Simple_repeat 2 79 0 289 195 26 18 chr4 157730684 157730797 -26557865 + CT-rich Low_complexity Low_complexity 4 117 0 697 164 0 0 chr4 157730807 157730923 -26557739 - AluJo/FRAM SINE Alu -35 277 162 553 130 11 0 chr4 157730916 157731008 -26557654 - AluS SINE Alu -219 93 1 * 1237 292 26 27 chr4 157731008 157731628 -26557034 - ERVL-C1 LTR ERVL -4776 988 282 389 205 31 0 chr4 157731665 157731792 -26556870 + (TA)n Simple_repeat Simple_repeat 1 131 0 23 54 0 0 chr4 157731792 157731829 -26556833 + AT_rich Low_complexity Low_complexity 1 37 0 326 301 0 0 chr4 157731877 157731960 -26556702 - ERVL-C1 LTR ERVL -5604 160 78 2112 135 0 0 chr4 157731960 157732263 -26556399 - AluSx SINE Alu -9 303 1 1152 265 18 37 chr4 157732359 157732740 -26555922 - MLT2C1 LTR ERVL -7 390 17 804 107 0 57 chr4 157732948 157733088 -26555574 + FLAM_C SINE Alu 1 132 -1 254 232 0 12 chr4 157733767 157733849 -26554813 + (TA)n Simple_repeat Simple_repeat 2 82 0 302 233 96 96 chr4 157734319 157734559 -26554103 + L1MC4a LINE L1 6284 6523 -1285 212 59 29 0 chr4 157734611 157734645 -26554017 + (TA)n Simple_repeat Simple_repeat 2 36 0 1191 312 58 37 chr4 157734645 157735321 -26553341 + L1MC4 LINE L1 6908 7597 -445 244 256 51 0 chr4 157735528 157735606 -26553056 + L1MC4 LINE L1 7809 7890 -152 326 326 50 50 chr4 157735704 157735925 -26552737 - MLT1J LTR MaLR -265 246 26 2170 123 20 0 chr4 157735972 157736092 -26552570 + AluSg SINE Alu 3 119 -191 270 73 0 0 chr4 157736092 157736133 -26552529 + (CA)n Simple_repeat Simple_repeat 2 42 0 2170 123 20 0 chr4 157736133 157736312 -26552350 + AluSg SINE Alu 119 308 -2 208 216 0 0 chr4 157736717 157736754 -26551908 + polypurine Low_complexity Low_complexity 1 37 0 1691 174 0 7 chr4 157737207 157737482 -26551180 + AluJo SINE Alu 11 283 -29 333 0 0 0 chr4 157737713 157737750 -26550912 + (TG)n Simple_repeat Simple_repeat 2 38 0 404 305 115 37 chr4 157738109 157739595 -26549067 - L1ME3A LINE L1 -234 5936 4254 336 297 46 4 chr4 157739698 157739937 -26548725 - L1ME3A LINE L1 -2196 3950 3702 3506 266 122 31 chr4 157739964 157742208 -26546454 - L1MEc LINE L1 -1613 4602 2197 992 320 44 6 chr4 157744050 157744553 -26544109 - L1ME3A LINE L1 0 6170 5649 316 312 136 30 chr4 157744558 157744859 -26543803 - L1ME3A LINE L1 -577 5587 5255 7625 247 54 22 chr4 157744995 157748040 -26540622 + L1P4 LINE L1 323 3468 -3329 249 264 17 86 chr4 157748153 157748327 -26540335 + L1P4 LINE L1 3350 3511 -3286 953 233 40 18 chr4 157748722 157748950 -26539712 - MIR SINE MIR -22 240 8 2264 97 0 10 chr4 157749010 157749321 -26539341 - AluSc SINE Alu -1 308 1 21 0 0 0 chr4 157749400 157749421 -26539241 + AT_rich Low_complexity Low_complexity 1 21 0 10222 209 23 12 chr4 157749509 157752232 -26536430 + L1P4 LINE L1 3510 6266 -550 828 135 0 0 chr4 157752232 157752399 -26536263 + L1PA15 LINE L1 6025 6200 0 347 204 0 153 chr4 157752913 157752972 -26535690 - L1MC3 LINE L1 -455 7330 7308 2207 76 0 0 chr4 157752972 157753262 -26535400 - AluY SINE Alu -6 305 16 347 204 0 153 chr4 157753262 157753359 -26535303 - L1MC3 LINE L1 -477 7308 7198 255 263 13 0 chr4 157753381 157753457 -26535205 - MLT1F1 LTR MaLR -456 111 35 430 167 39 0 chr4 157753457 157753559 -26535103 - L1MC3 LINE L1 -688 7097 6992 267 31 0 0 chr4 157754975 157755007 -26533655 + (TG)n Simple_repeat Simple_repeat 2 33 0 25 51 0 0 chr4 157755233 157755272 -26533390 + AT_rich Low_complexity Low_complexity 1 39 0 2656 205 31 2 chr4 157755615 157756162 -26532500 + L1MA9 LINE L1 5377 5939 -373 1327 180 8 199 chr4 157756179 157756696 -26531966 + MER47B DNA MER2_type 1 418 0 1066 202 24 74 chr4 157756699 157757036 -26531626 + L1MA9 LINE L1 5953 6272 -40 222 163 0 41 chr4 157758080 157758129 -26530533 + GA-rich Low_complexity Low_complexity 2 48 0 1611 117 117 0 chr4 157759058 157759306 -26529356 + AluSx SINE Alu 36 312 0 424 347 112 16 chr4 157759532 157759915 -26528747 + L2 LINE L2 50 469 -2845 402 297 80 14 chr4 157759930 157760068 -26528594 + MER5B DNA MER1_type 32 178 0 455 346 121 38 chr4 157760068 157760548 -26528114 + L2 LINE L2 470 989 -2325 * 618 342 136 3 chr4 157760542 157760629 -26528033 - L2 LINE L2 -1128 2186 2112 216 0 0 0 chr4 157760629 157760653 -26528009 + (TAA)n Simple_repeat Simple_repeat 2 25 0 618 342 136 3 chr4 157760653 157760925 -26527737 - L2 LINE L2 -1202 2112 1779 1135 293 135 6 chr4 157761119 157761594 -26527068 + L2 LINE L2 2424 2959 -355 1457 219 6 13 chr4 157761600 157761915 -26526747 - MLT1A1 LTR MaLR -43 322 10 1939 86 48 0 chr4 157761986 157762108 -26526554 + AluSc SINE Alu 1 116 -189 369 0 0 0 chr4 157762108 157762149 -26526513 + (CA)n Simple_repeat Simple_repeat 2 42 0 1939 86 48 0 chr4 157762149 157762318 -26526344 + AluSc SINE Alu 116 305 0 494 275 8 0 chr4 157762567 157762687 -26525975 + MER119 DNA MER1_type 188 308 -275 259 279 8 62 chr4 157762698 157762827 -26525835 + MER119 DNA MER1_type 431 552 -31 48 0 0 0 chr4 157763615 157763663 -26524999 + AT_rich Low_complexity Low_complexity 1 48 0 16918 43 4 1 chr4 157763663 157766527 -26522135 - L1PA5 LINE L1 -8 6146 3270 243 414 0 0 chr4 157766906 157767005 -26521657 + L2 LINE L2 3137 3235 -37 246 330 52 17 chr4 157767169 157767284 -26521378 + L2 LINE L2 3154 3272 0 22 35 0 0 chr4 157767513 157767542 -26521120 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr4 157767809 157767843 -26520819 + AT_rich Low_complexity Low_complexity 1 34 0 187 31 62 0 chr4 157767985 157768017 -26520645 + (TTTAA)n Simple_repeat Simple_repeat 3 36 0 22 70 0 0 chr4 157768095 157768138 -26520524 + AT_rich Low_complexity Low_complexity 1 43 0 1075 326 86 64 chr4 157768722 157769835 -26518827 - HERV16 LTR ERVL -3817 1179 42 247 291 62 79 chr4 157770053 157770280 -26518382 - LTR16A1 LTR ERVL -213 244 22 213 360 44 0 chr4 157770573 157770687 -26517975 - L2 LINE L2 -8 3264 3146 210 91 0 0 chr4 157771029 157771062 -26517600 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 2179 95 3 7 chr4 157771583 157771879 -26516783 - AluY SINE Alu -16 295 1 901 233 33 12 chr4 157772187 157772462 -26516200 + L1MB5 LINE L1 5881 6160 -14 24 53 0 0 chr4 157772462 157772500 -26516162 + AT_rich Low_complexity Low_complexity 1 38 0 1299 235 42 25 chr4 157773501 157773549 -26515113 - MLT1A1 LTR MaLR -1 364 318 2446 61 3 12 chr4 157773549 157773876 -26514786 + L1PA7 LINE L1 5830 6153 -1 1299 235 42 25 chr4 157773876 157774185 -26514477 - MLT1A1 LTR MaLR -47 318 1 21 71 0 0 chr4 157774603 157774645 -26514017 + AT_rich Low_complexity Low_complexity 1 42 0 282 279 143 20 chr4 157775116 157775263 -26513399 + L2 LINE L2 3143 3307 -6 21 0 0 0 chr4 157775325 157775346 -26513316 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr4 157775679 157775720 -26512942 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr4 157776853 157776875 -26511787 + AT_rich Low_complexity Low_complexity 1 22 0 201 147 0 0 chr4 157778527 157778561 -26510101 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 299 181 0 28 chr4 157779024 157779096 -26509566 + CT-rich Low_complexity Low_complexity 1 70 0 945 141 0 11 chr4 157779099 157779276 -26509386 + (TTCC)n Simple_repeat Simple_repeat 4 178 0 1134 133 6 0 chr4 157779293 157779458 -26509204 - AluSg/x SINE Alu -35 275 110 279 167 100 17 chr4 157779459 157779519 -26509143 + L1MCb LINE L1 498 562 -5483 31 26 0 0 chr4 157780612 157780650 -26508012 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr4 157780977 157781000 -26507662 + AT_rich Low_complexity Low_complexity 1 23 0 2716 178 32 24 chr4 157781147 157781486 -26507176 - L1MB3 LINE L1 -2 6181 5846 2248 92 0 16 chr4 157781486 157781791 -26506871 - AluY SINE Alu -11 300 1 2716 178 32 24 chr4 157781791 157781952 -26506710 - L1MB3 LINE L1 -337 5846 5673 1878 210 3 8 chr4 157781952 157782319 -26506343 + MLT1A1 LTR MaLR 1 365 0 2716 178 32 24 chr4 157782319 157782412 -26506250 - L1MB3 LINE L1 -510 5673 5582 3389 108 10 6 chr4 157782447 157782956 -26505706 - MER9 LTR ERVK 0 511 1 21 0 0 0 chr4 157784852 157784873 -26503789 + AT_rich Low_complexity Low_complexity 1 21 0 2045 121 11 0 chr4 157784903 157785224 -26503438 - AluSx SINE Alu 0 326 3 1063 303 134 28 chr4 157785338 157785876 -26502786 - MLT1G1 LTR MaLR 0 595 1 208 143 0 0 chr4 157786100 157786135 -26502527 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 268 325 74 61 chr4 157786226 157786684 -26501978 + L2 LINE L2 1632 2095 -1219 235 341 67 34 chr4 157787195 157787523 -26501139 + L2 LINE L2 2449 2787 -527 200 200 40 0 chr4 157787827 157787877 -26500785 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 1533 245 29 20 chr4 157787949 157788446 -26500216 + MER89 LTR ERV1 3 559 0 3197 289 64 60 chr4 157788453 157788636 -26500026 + MER89-int LTR ERV1 8 189 -6612 1662 164 91 6 chr4 157788636 157788978 -26499684 - THE1C LTR MaLR -4 371 1 3197 289 64 60 chr4 157788978 157789580 -26499082 + MER89-int LTR ERV1 189 787 -6014 1919 147 50 32 chr4 157789580 157789960 -26498702 + MLT1B LTR MaLR 2 388 -2 3197 289 64 60 chr4 157789960 157790714 -26497948 + MER89-int LTR ERV1 787 1554 -5247 6126 233 74 29 chr4 157790728 157791351 -26497311 + MER89-int LTR ERV1 4750 5344 -1457 1777 172 0 7 chr4 157791351 157791653 -26497009 - AluJb SINE Alu -12 300 1 6126 233 74 29 chr4 157791653 157792728 -26495934 + MER89-int LTR ERV1 5344 6523 -278 549 221 48 14 chr4 157792732 157792877 -26495785 + MER89 LTR ERV1 396 545 -14 26 30 0 0 chr4 157792894 157792927 -26495735 + AT_rich Low_complexity Low_complexity 1 33 0 218 167 42 0 chr4 157793003 157793051 -26495611 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 215 214 0 0 chr4 157793109 157793151 -26495511 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 11567 125 10 106 chr4 157793702 157796067 -26492595 + L1P LINE L1 22 2159 -3987 * 15042 53 3 102 chr4 157796053 157798454 -26490208 - L1P LINE L1 -2031 4115 1952 1236 69 0 0 chr4 157798451 157798610 -26490052 - L1P LINE L1 -4537 1609 1451 * 3597 47 5 0 chr4 157798609 157799054 -26489608 + L1PA6 LINE L1 5303 5749 -405 1636 95 13 0 chr4 157799056 157799287 -26489375 + L1PA6 LINE L1 5910 6143 -11 480 215 23 77 chr4 157799445 157799575 -26489087 - FLAM_C SINE Alu -15 128 6 371 306 44 32 chr4 157799601 157799849 -26488813 - L1M4 LINE L1 -1042 5104 4854 3337 207 23 31 chr4 157799854 157800728 -26487934 - L1M3 LINE L1 -908 5238 4372 1967 152 43 9 chr4 157800728 157801138 -26487524 + L1M3 LINE L1 5217 5640 -528 1184 301 51 25 chr4 157801133 157801937 -26486725 - L1M4 LINE L1 -1319 4827 4003 * 254 174 10 174 chr4 157801937 157802035 -26486627 - LTR16B LTR ERVL 0 464 383 2375 320 59 30 chr4 157802035 157803261 -26485401 - HERV16 LTR ERVL -2144 2852 1592 402 302 0 29 chr4 157804268 157804407 -26484255 - HERV16 LTR ERVL -4547 449 315 665 336 98 11 chr4 157804929 157805206 -26483456 - LTR16B LTR ERVL -8 456 156 237 298 53 23 chr4 157805315 157805446 -26483216 - L1MEc LINE L1 -6185 211 77 2072 306 65 38 chr4 157806046 157806628 -26482034 - L1PA16 LINE L1 -2 6164 5567 2414 155 27 70 chr4 157806633 157806721 -26481941 + L1PA6 LINE L1 5254 5344 -822 6538 46 24 26 chr4 157806721 157807605 -26481057 + L1PA6 LINE L1 5272 6153 -1 2414 155 27 70 chr4 157807605 157808027 -26480635 + L1PA6 LINE L1 5344 5742 -424 29 28 0 0 chr4 157808366 157808402 -26480260 + AT_rich Low_complexity Low_complexity 1 36 0 30 45 0 0 chr4 157809454 157809498 -26479164 + AT_rich Low_complexity Low_complexity 1 44 0 2446 80 0 0 chr4 157810234 157810545 -26478117 - AluY SINE Alu 0 311 1 1438 194 20 24 chr4 157811981 157812274 -26476388 - AluSx SINE Alu -10 302 11 266 357 36 0 chr4 157812532 157812644 -26476018 - MER5B DNA MER1_type -3 175 60 902 237 17 49 chr4 157812644 157812931 -26475731 - L1MC4 LINE L1 -896 6988 6632 260 278 28 0 chr4 157813000 157813072 -26475590 - L1MC4a LINE L1 -1091 6717 6644 474 236 60 81 chr4 157813120 157813260 -26475402 - L1MC4 LINE L1 -1322 6720 6587 2201 124 0 0 chr4 157813260 157813559 -26475103 - AluSq SINE Alu -14 299 1 474 236 60 81 chr4 157813559 157813702 -26474960 - L1MC4 LINE L1 -1455 6587 6443 595 196 13 0 chr4 157813865 157814018 -26474644 + GA-rich Low_complexity Low_complexity 2 156 0 890 75 0 0 chr4 157814018 157814125 -26474537 - AluSc SINE Alu -201 108 2 214 244 61 73 chr4 157815670 157815752 -26472910 + MIR SINE MIR 36 116 -146 23 0 0 0 chr4 157816522 157816545 -26472117 + AT_rich Low_complexity Low_complexity 1 23 0 2251 96 0 0 chr4 157816763 157817056 -26471606 + AluSg SINE Alu 1 293 -17 28 0 0 0 chr4 157817609 157817637 -26471025 + AT_rich Low_complexity Low_complexity 1 28 0 240 281 193 49 chr4 157818228 157818555 -26470107 + L2 LINE L2 2898 3271 -42 267 333 54 23 chr4 157818916 157819045 -26469617 - L2 LINE L2 0 3313 3181 27 29 0 0 chr4 157819908 157819942 -26468720 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr4 157821653 157821683 -26466979 + AT_rich Low_complexity Low_complexity 1 30 0 671 118 0 0 chr4 157822428 157822521 -26466141 - AluSg SINE Alu -204 106 14 1345 93 0 6 chr4 157822521 157822704 -26465958 + AluSg/x SINE Alu 120 301 -9 382 283 20 6 chr4 157822756 157822920 -26465742 - L1MEc LINE L1 -864 2037 1837 242 271 0 0 chr4 157823115 157823185 -26465477 - L1MEc LINE L1 -4911 1629 1560 25 83 0 0 chr4 157823234 157823294 -26465368 + AT_rich Low_complexity Low_complexity 1 60 0 31 0 0 0 chr4 157823942 157823973 -26464689 + AT_rich Low_complexity Low_complexity 1 31 0 435 343 120 9 chr4 157824800 157825016 -26463646 + MIR SINE MIR 20 259 -3 256 114 0 43 chr4 157825101 157825171 -26463491 + (ATTTG)n Simple_repeat Simple_repeat 3 69 0 26 107 0 0 chr4 157825171 157825274 -26463388 + AT_rich Low_complexity Low_complexity 1 103 0 2379 265 44 12 chr4 157826533 157827506 -26461156 - L1MCa LINE L1 -2912 3652 2649 1114 237 140 63 chr4 157827576 157828321 -26460341 - L1MCa LINE L1 -3947 2617 1690 628 106 0 0 chr4 157828321 157828415 -26460247 + L1PB1 LINE L1 6050 6143 -8 1114 237 140 63 chr4 157828415 157828637 -26460025 - L1MCa LINE L1 -4874 1690 1486 1102 225 63 13 chr4 157828691 157828993 -26459669 - L1MB8 LINE L1 -1 6177 5861 1228 209 41 22 chr4 157829090 157829453 -26459209 - L1MCa LINE L1 -5221 1343 974 723 232 17 11 chr4 157829461 157829642 -26459020 - L1MCa LINE L1 -5160 885 704 1054 236 36 0 chr4 157829642 157829867 -26458795 + MER67B LTR ERV1 1 233 -428 1440 239 73 6 chr4 157829878 157830233 -26458429 - MSTD LTR MaLR -17 379 1 1985 245 54 10 chr4 157830233 157830718 -26457944 - MSTD-int LTR MaLR -1 1734 1229 1500 121 110 43 chr4 157830732 157831013 -26457649 - LTR10A LTR ERV1 -62 547 248 327 262 141 58 chr4 157831206 157831412 -26457250 - LTR10A LTR ERV1 -374 235 13 3802 259 21 40 chr4 157831484 157832598 -26456064 - MSTD-int LTR MaLR -641 1094 2 1003 224 50 53 chr4 157832600 157832917 -26455745 - MSTD LTR MaLR 0 396 76 1632 237 42 5 chr4 157833144 157833567 -26455095 + MER67B LTR ERV1 71 661 0 26 30 0 0 chr4 157834076 157834109 -26454553 + AT_rich Low_complexity Low_complexity 1 33 0 1018 146 92 0 chr4 157834348 157834512 -26454150 + THE1B LTR MaLR 1 179 -185 6799 116 11 3 chr4 157834512 157835501 -26453161 + THE1B-int LTR MaLR 582 1578 -2 1717 180 47 42 chr4 157835504 157835865 -26452797 + THE1B LTR MaLR 2 364 0 1019 225 19 0 chr4 157836006 157836219 -26452443 - MER20 DNA MER1_type -1 218 2 1755 153 0 20 chr4 157836326 157836620 -26452042 - AluSx SINE Alu -24 288 1 914 33 5 4 chr4 157836681 157836806 -26451856 + L1PA4 LINE L1 4269 4394 -1752 8230 32 0 0 chr4 157836906 157838660 -26450002 + L1PA4 LINE L1 4397 6150 -5 23 68 0 0 chr4 157838668 157838712 -26449950 + AT_rich Low_complexity Low_complexity 1 44 0 2266 177 9 25 chr4 157838969 157839404 -26449258 + MSTA LTR MaLR 1 428 0 264 77 0 0 chr4 157839962 157840001 -26448661 + (CA)n Simple_repeat Simple_repeat 2 40 0 262 325 53 41 chr4 157840069 157840238 -26448424 + LTR16A1 LTR ERVL 73 243 -214 702 171 10 78 chr4 157840254 157840447 -26448215 - MER53 DNA DNA -7 182 3 356 270 36 9 chr4 157840474 157840585 -26448077 + LTR16A LTR ERVL 325 438 -12 1058 331 54 31 chr4 157841160 157841749 -26446913 + HERV16 LTR ERVL 588 1190 -3806 2494 341 64 25 chr4 157841890 157843342 -26445320 + HERV16 LTR ERVL 1452 2948 -2048 1112 373 45 21 chr4 157843843 157844715 -26443947 + HERV16 LTR ERVL 4146 5038 -726 4433 115 15 51 chr4 157844717 157845766 -26442896 - MER11A LTR ERVK 0 1266 1 346 358 71 56 chr4 157845994 157846402 -26442260 - LTR16B LTR ERVL 0 464 51 222 243 14 14 chr4 157846886 157846956 -26441706 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 351 240 19 0 chr4 157847298 157847402 -26441260 - L1MA10 LINE L1 -28 6306 6201 * 5830 188 17 6 chr4 157847396 157849496 -26439166 + L1PB3 LINE L1 4027 6154 0 22 80 0 0 chr4 157851116 157851166 -26437496 + AT_rich Low_complexity Low_complexity 1 50 0 351 0 0 0 chr4 157851428 157851467 -26437195 + (CA)n Simple_repeat Simple_repeat 1 39 0 206 140 0 20 chr4 157852161 157852211 -26436451 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 960 232 57 0 chr4 157852522 157852733 -26435929 - MER58A DNA MER1_type 0 224 2 449 261 77 39 chr4 157852742 157852872 -26435790 + MER5A DNA MER1_type 1 135 -54 463 298 23 0 chr4 157852899 157853030 -26435632 - MER5A DNA MER1_type -46 143 10 294 225 92 70 chr4 157853317 157853459 -26435203 - L2 LINE L2 -4 3309 3165 318 299 92 68 chr4 157853841 157854122 -26434540 + L2 LINE L2 3023 3310 -3 207 348 33 11 chr4 157854637 157854729 -26433933 - MIR SINE MIR -120 142 49 1010 249 15 62 chr4 157854981 157855318 -26433344 + MER58B DNA MER1_type 20 340 -1 366 225 113 21 chr4 157855318 157855455 -26433207 + MLT1J LTR MaLR 46 195 -316 234 222 49 37 chr4 157855528 157855609 -26433053 + MLT1J LTR MaLR 430 511 0 1143 142 4 92 chr4 157856181 157856421 -26432241 + MLT2D LTR ERVL 1 219 -195 365 145 66 13 chr4 157856423 157856457 -26432205 + MLT2D LTR ERVL 335 366 -48 225 0 0 0 chr4 157856457 157856482 -26432180 + (CA)n Simple_repeat Simple_repeat 2 26 0 365 145 66 13 chr4 157856482 157856523 -26432139 + MLT2D LTR ERVL 366 414 0 297 158 50 30 chr4 157856594 157856695 -26431967 + (TATAA)n Simple_repeat Simple_repeat 4 106 0 759 197 14 0 chr4 157856724 157856871 -26431791 - FAM SINE Alu -35 150 2 476 202 29 19 chr4 157858706 157858810 -26429852 + LTR69 LTR ERVL 26 130 -458 368 301 71 53 chr4 157860119 157861186 -26427476 - L1MDb LINE L1 -4353 2368 1256 38 39 0 0 chr4 157861211 157861263 -26427399 + AT_rich Low_complexity Low_complexity 1 52 0 32 75 0 0 chr4 157863606 157863673 -26424989 + AT_rich Low_complexity Low_complexity 1 67 0 28 48 0 0 chr4 157864573 157864615 -26424047 + AT_rich Low_complexity Low_complexity 1 42 0 2155 116 0 0 chr4 157865399 157865693 -26422969 - AluSx SINE Alu -18 294 1 212 400 11 0 chr4 157866929 157867019 -26421643 + L2 LINE L2 3182 3272 0 1919 138 7 0 chr4 157867878 157868176 -26420486 - AluSg SINE Alu -10 300 1 26 30 0 0 chr4 157868216 157868249 -26420413 + AT_rich Low_complexity Low_complexity 1 33 0 27 49 0 0 chr4 157868263 157868304 -26420358 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr4 157868595 157868620 -26420042 + AT_rich Low_complexity Low_complexity 1 25 0 341 303 26 19 chr4 157869605 157869760 -26418902 - L1M4 LINE L1 -2497 3649 3494 779 219 12 24 chr4 157869778 157869947 -26418715 + FRAM SINE Alu 3 169 -7 1253 289 102 41 chr4 157869991 157870891 -26417771 - L1M4 LINE L1 -2875 3271 2291 2246 114 0 0 chr4 157870891 157871189 -26417473 + AluSq SINE Alu 1 298 -15 1253 289 102 41 chr4 157871189 157871371 -26417291 - L1M4 LINE L1 -3855 2291 2122 1316 235 43 69 chr4 157871489 157871886 -26416776 - L1MA9 LINE L1 -122 6190 5801 1775 184 23 0 chr4 157871886 157872191 -26416471 - AluJb SINE Alu 0 312 1 1316 235 43 69 chr4 157872191 157872338 -26416324 - L1MA9 LINE L1 -511 5801 5652 361 319 96 16 chr4 157872864 157873052 -26415610 - HAL1 LINE L1 -1349 1158 956 403 92 73 0 chr4 157873108 157873217 -26415445 + (TCTA)n Simple_repeat Simple_repeat 4 120 0 310 105 0 0 chr4 157874484 157874541 -26414121 - LTR66 LTR ERVL -160 450 394 255 202 28 0 chr4 157874551 157874660 -26414002 + (TA)n Simple_repeat Simple_repeat 2 113 0 32 26 0 0 chr4 157875074 157875113 -26413549 + AT_rich Low_complexity Low_complexity 1 39 0 648 255 84 108 chr4 157875164 157875527 -26413135 - L1ME1 LINE L1 -1 6165 5814 243 0 0 0 chr4 157875527 157875554 -26413108 + (TG)n Simple_repeat Simple_repeat 2 28 0 648 255 84 108 chr4 157875554 157875653 -26413009 - L1ME1 LINE L1 -352 5814 5714 22 56 0 0 chr4 157875653 157875689 -26412973 + AT_rich Low_complexity Low_complexity 1 36 0 405 0 0 0 chr4 157876397 157876442 -26412220 + (TA)n Simple_repeat Simple_repeat 1 45 0 1409 146 16 167 chr4 157876683 157877125 -26411537 + MER67C LTR ERV1 5 403 -243 254 184 20 0 chr4 157877194 157877243 -26411419 + MER67D LTR ERV1 431 480 -34 461 79 0 0 chr4 157877243 157877306 -26411356 - AluY SINE Alu -8 302 240 1906 57 0 8 chr4 157877346 157877591 -26411071 - AluY SINE Alu -66 245 3 1701 53 0 5 chr4 157878229 157878467 -26410195 + AluY SINE Alu 76 312 0 1396 253 58 29 chr4 157879165 157879611 -26409051 + L1MCb LINE L1 1 459 -5586 485 119 0 12 chr4 157879625 157879709 -26408953 + (TTCC)n Simple_repeat Simple_repeat 4 86 0 243 267 0 13 chr4 158080399 158080474 -26208188 - L1M4 LINE L1 -1803 4343 4270 21 0 0 0 chr4 158080615 158080636 -26208026 + AT_rich Low_complexity Low_complexity 1 21 0 507 314 50 0 chr4 158081040 158081199 -26207463 + MIR SINE MIR 2 168 -94 244 227 53 27 chr4 158081359 158081434 -26207228 - L2 LINE L2 -16 3297 3221 429 143 0 0 chr4 158081826 158081903 -26206759 - AluSc SINE Alu -1 308 232 28966 43 35 3 chr4 158082227 158085894 -26202768 + L1P LINE L1 2 3787 -2359 2322 110 0 0 chr4 158086009 158086317 -26202345 + AluSx SINE Alu 1 308 -4 957 175 12 6 chr4 158086372 158086543 -26202119 - FAM SINE Alu -3 172 1 13249 144 63 27 chr4 158086608 158088941 -26199721 - Tigger1 DNA MER2_type 0 2418 2 202 74 0 0 chr4 158089755 158089782 -26198880 + L2 LINE L2 3263 3289 -24 182 208 0 125 chr4 158089851 158089947 -26198715 - MER5C DNA MER1_type -18 306 223 238 301 57 45 chr4 158089984 158090160 -26198502 - L1MEc LINE L1 -5923 473 296 985 107 20 0 chr4 158090245 158090395 -26198267 - L1PA15 LINE L1 -1 6164 6012 2168 213 23 16 chr4 158090398 158091018 -26197644 - LTR27 LTR ERV1 -130 506 1 237 292 26 35 chr4 158091149 158091262 -26197400 - L1ME LINE L1 -4809 1452 1341 357 306 61 40 chr4 158091274 158091576 -26197086 - L1ME LINE L1 -5177 893 750 1720 156 7 7 chr4 158091576 158091852 -26196810 - AluJo SINE Alu -26 286 11 357 306 61 40 chr4 158091852 158092053 -26196609 - L1ME LINE L1 -5320 750 555 23 78 0 0 chr4 158093051 158093102 -26195560 + AT_rich Low_complexity Low_complexity 1 51 0 459 0 0 0 chr4 158093154 158093205 -26195457 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 677 260 69 28 chr4 158094368 158094760 -26193902 - L1M4 LINE L1 -1694 4452 4045 35 0 0 0 chr4 158095855 158095890 -26192772 + AT_rich Low_complexity Low_complexity 1 35 0 2165 109 3 10 chr4 158096286 158096599 -26192063 + AluSq SINE Alu 1 311 -2 38769 39 2 2 chr4 158097251 158102782 -26185880 - L1PA3 LINE L1 -5 6150 617 669 62 0 0 chr4 158102782 158102863 -26185799 - L1PA3 LINE L1 -6054 92 12 263 100 0 0 chr4 158102877 158102917 -26185745 + FRAM/FAM SINE Alu 22 61 -114 2543 157 18 45 chr4 158103227 158103782 -26184880 + L1MA6 LINE L1 5759 6298 -2 219 386 35 12 chr4 158103866 158104037 -26184625 - MIR SINE MIR -63 199 25 33 25 0 0 chr4 158105254 158105294 -26183368 + AT_rich Low_complexity Low_complexity 1 40 0 391 337 72 0 chr4 158105790 158105983 -26182679 + HAL1 LINE L1 125 331 -2176 256 374 38 48 chr4 158105991 158106384 -26182278 + HAL1 LINE L1 376 764 -1743 24 0 0 0 chr4 158107134 158107158 -26181504 + AT_rich Low_complexity Low_complexity 1 24 0 353 82 72 0 chr4 158107717 158107814 -26180848 + (TA)n Simple_repeat Simple_repeat 1 104 0 334 352 16 44 chr4 158108439 158108621 -26180041 + HAL1 LINE L1 599 775 -1732 708 262 81 6 chr4 158108630 158108951 -26179711 - Charlie2 DNA MER1_type -667 2195 1851 311 319 91 20 chr4 158108946 158109244 -26179418 - Charlie2 DNA MER1_type -2535 327 9 * 345 289 63 26 chr4 158111214 158111461 -26177201 - L1ME3A LINE L1 -7 6155 5871 481 259 143 35 chr4 158111484 158111770 -26176892 + L1ME3A LINE L1 5521 5837 -333 522 273 137 22 chr4 158112040 158112311 -26176351 + L1ME3A LINE L1 5536 5837 -333 321 368 13 7 chr4 158112376 158112531 -26176131 + ERVL LTR ERVL 4267 4422 -1342 189 159 0 0 chr4 158113095 158113139 -26175523 + T-rich Low_complexity Low_complexity 5 48 0 334 240 25 103 chr4 158113354 158113558 -26175104 - L1MC4 LINE L1 -407 7635 7448 22 35 0 0 chr4 158114478 158114507 -26174155 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr4 158114591 158114623 -26174039 + AT_rich Low_complexity Low_complexity 1 32 0 34 72 0 0 chr4 158114645 158114714 -26173948 + AT_rich Low_complexity Low_complexity 1 69 0 259 269 0 42 chr4 158114832 158114951 -26173711 + L1MC4 LINE L1 6590 6703 -1339 340 267 47 0 chr4 158114951 158115037 -26173625 + L1MC4 LINE L1 6614 6703 -1339 209 250 33 0 chr4 158115045 158115105 -26173557 + (TATATG)n Simple_repeat Simple_repeat 1 62 0 1790 196 94 15 chr4 158115105 158115560 -26173102 + L1MA9 LINE L1 5784 6274 -38 980 239 14 18 chr4 158116514 158116736 -26171926 - MER8 DNA MER2_type -17 222 2 21 0 0 0 chr4 158117526 158117547 -26171115 + AT_rich Low_complexity Low_complexity 1 21 0 1965 134 13 10 chr4 158118328 158118626 -26170036 + AluSx SINE Alu 1 299 -13 247 361 82 6 chr4 158119048 158119206 -26169456 + L2 LINE L2 2222 2391 -923 2130 113 0 30 chr4 158120060 158120362 -26168300 + AluSq SINE Alu 1 293 -20 351 0 0 0 chr4 158120613 158120652 -26168010 + (TG)n Simple_repeat Simple_repeat 2 40 0 286 240 27 20 chr4 158120657 158120807 -26167855 + (TA)n Simple_repeat Simple_repeat 2 152 0 511 141 40 61 chr4 158120862 158120961 -26167701 - FRAM SINE Alu -6 170 74 2797 231 97 13 chr4 158120961 158121805 -26166857 - L1MC4a LINE L1 -73 7735 6821 1919 128 0 10 chr4 158122934 158123252 -26165410 - AluSq SINE Alu 0 315 1 22 35 0 0 chr4 158123457 158123486 -26165176 + AT_rich Low_complexity Low_complexity 1 29 0 1781 78 0 13 chr4 158123498 158123788 -26164874 - AluY SINE Alu 0 342 56 825 131 0 22 chr4 158123790 158123927 -26164735 - MER11B LTR ERVK 0 1236 1103 2072 126 17 0 chr4 158124185 158124486 -26164176 + AluSp SINE Alu 1 306 -7 532 286 57 10 chr4 158124717 158124909 -26163753 + MIR SINE MIR 3 203 -59 1020 149 0 0 chr4 158125098 158125272 -26163390 + (TA)n Simple_repeat Simple_repeat 2 175 0 253 288 61 0 chr4 158126082 158126148 -26162514 - L3 LINE CR1 -65 1512 1443 270 427 68 19 chr4 158126719 158127192 -26161470 + L3 LINE CR1 1038 1533 -44 712 235 36 6 chr4 158127233 158127399 -26161263 - LTR8 LTR ERV1 0 691 521 2203 117 7 0 chr4 158127417 158127724 -26160938 - AluSp SINE Alu -4 309 1 1446 182 15 109 chr4 158127755 158128151 -26160511 - LTR8 LTR ERV1 -332 359 1 1919 140 0 33 chr4 158128527 158128834 -26159828 + AluSg SINE Alu 1 297 -13 203 339 104 66 chr4 158129648 158130318 -26158344 - L2 LINE L2 -479 2835 2140 2206 95 23 7 chr4 158131137 158131443 -26157219 + AluY SINE Alu 1 311 0 21 0 0 0 chr4 158131893 158131914 -26156748 + AT_rich Low_complexity Low_complexity 1 21 0 197 225 25 0 chr4 158131962 158132002 -26156660 + MER5A DNA MER1_type 71 111 -78 681 292 61 61 chr4 158132036 158132430 -26156232 + L1ME2 LINE L1 2731 3127 -3019 2026 100 50 4 chr4 158132430 158132709 -26155953 + AluSg SINE Alu 1 292 -18 681 292 61 61 chr4 158132709 158132892 -26155770 + L1ME2 LINE L1 3126 3308 -2838 279 371 35 7 chr4 158132902 158133045 -26155617 - MIR SINE MIR -98 164 18 537 58 0 0 chr4 158133308 158133377 -26155285 + (CATA)n Simple_repeat Simple_repeat 3 71 0 187 357 43 0 chr4 158133520 158133590 -26155072 + L2 LINE L2 3150 3222 -50 22 0 0 0 chr4 158134420 158134442 -26154220 + AT_rich Low_complexity Low_complexity 1 22 0 282 225 14 0 chr4 158135143 158135214 -26153448 - L1ME1 LINE L1 -5 6161 6090 1235 229 50 22 chr4 158135267 158135668 -26152994 - L1M4 LINE L1 -1308 4838 4427 241 243 68 0 chr4 158135669 158135743 -26152919 - L1M4 LINE L1 -1807 4339 4261 791 321 30 8 chr4 158135744 158136111 -26152551 - L1MEc LINE L1 -4593 1803 1429 254 330 20 0 chr4 158136441 158136541 -26152121 - L1MEc LINE L1 -6122 274 173 263 224 0 0 chr4 158136697 158136764 -26151898 - L1M4 LINE L1 -2116 4030 3964 * 1193 244 64 82 chr4 158136763 158137434 -26151228 + L1ME2 LINE L1 4519 5177 -969 13987 148 19 112 chr4 158137454 158140896 -26147766 + L1P LINE L1 12 3134 -3012 662 88 3 1 chr4 158140890 158140990 -26147672 - L1P3 LINE L1 -595 5559 5459 * 1113 70 0 0 chr4 158140992 158141135 -26147527 + L1PA8 LINE L1 6027 6169 -3 310 222 12 0 chr4 158141161 158141242 -26147420 + L1ME2 LINE L1 5187 5268 -878 356 171 12 0 chr4 158141244 158141326 -26147336 + (TG)n Simple_repeat Simple_repeat 2 84 0 1582 265 87 28 chr4 158141333 158142046 -26146616 + L1ME2 LINE L1 5290 6044 -120 219 186 57 0 chr4 158142169 158142239 -26146423 + (TA)n Simple_repeat Simple_repeat 2 75 0 305 237 0 10 chr4 158142517 158142614 -26146048 + CT-rich Low_complexity Low_complexity 4 99 0 331 289 22 0 chr4 158143587 158143677 -26144985 - L1MC4 LINE L1 -1339 6703 6612 24 32 0 0 chr4 158144254 158144285 -26144377 + AT_rich Low_complexity Low_complexity 1 31 0 1892 114 7 7 chr4 158144285 158144565 -26144097 + AluSq SINE Alu 1 280 -33 180 0 0 0 chr4 158144566 158144586 -26144076 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2644 223 153 61 chr4 158145774 158147094 -26141568 - L1MCa LINE L1 -3961 2603 1162 640 241 44 73 chr4 158147073 158147388 -26141274 - L1MCa LINE L1 -5309 736 431 * 462 284 49 8 chr4 158147404 158147587 -26141075 - L1MCa LINE L1 -5858 346 1 1457 204 106 26 chr4 158148965 158149014 -26139648 + L1MB7 LINE L1 4915 4959 -1187 3402 66 11 11 chr4 158149014 158149456 -26139206 + MLT2A1 LTR ERVL 3 444 0 1457 204 106 26 chr4 158149456 158149858 -26138804 + L1MB7 LINE L1 4959 5402 -744 992 198 114 22 chr4 158149858 158150085 -26138577 - MLT1D LTR MaLR 0 505 258 384 109 0 0 chr4 158150104 158150159 -26138503 - MADE1 DNA Mariner -4 76 22 327 83 0 0 chr4 158150183 158150231 -26138431 - MADE1 DNA Mariner -32 48 1 806 195 13 98 chr4 158150257 158150493 -26138169 - MLT1D LTR MaLR -289 216 1 3158 215 26 31 chr4 158150494 158151265 -26137397 + L1MB7 LINE L1 5399 6165 -19 441 352 23 32 chr4 158151306 158151525 -26137137 - MIR SINE MIR -32 230 14 325 310 38 84 chr4 158151629 158151868 -26136794 + MIR SINE MIR 2 229 -33 210 91 0 0 chr4 158151868 158151901 -26136761 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 1230 283 80 69 chr4 158151903 158152448 -26136214 - L2 LINE L2 -9 3304 2727 180 0 0 0 chr4 158152448 158152468 -26136194 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1230 283 80 69 chr4 158152468 158152863 -26135799 - L2 LINE L2 -586 2727 2338 266 306 35 0 chr4 158153626 158153711 -26134951 - L2 LINE L2 0 3313 3226 2077 146 6 3 chr4 158155477 158155807 -26132855 - MER1B DNA MER1_type -2 335 5 320 147 13 0 chr4 158156855 158156930 -26131732 + (CA)n Simple_repeat Simple_repeat 2 77 0 183 362 0 0 chr4 158157393 158157440 -26131222 + L2 LINE L2 3206 3252 -20 237 314 33 66 chr4 158157734 158157855 -26130807 + L2 LINE L2 3164 3280 -33 29 47 0 0 chr4 158157855 158157898 -26130764 + AT_rich Low_complexity Low_complexity 1 43 0 247 313 0 0 chr4 158158406 158158496 -26130166 + L1P4 LINE L1 5734 5823 -351 642 102 31 10 chr4 158158617 158158715 -26129947 + HY3 scRNA scRNA 1 100 -1 316 306 23 46 chr4 158158767 158158940 -26129722 - L1M4 LINE L1 -1491 4655 4487 339 325 113 5 chr4 158160102 158160296 -26128366 + MIR SINE MIR 48 262 0 1484 118 20 0 chr4 158160560 158160805 -26127857 - L1MA3 LINE L1 0 6305 6056 1575 164 74 0 chr4 158161364 158161633 -26127029 + AluSg SINE Alu 1 289 -21 341 236 24 39 chr4 158161668 158161795 -26126867 + MER113 DNA MER1_type? 39 163 -358 238 241 133 0 chr4 158162414 158162497 -26126165 - L2 LINE L2 -211 3061 2968 4442 48 41 0 chr4 158162523 158163087 -26125575 + LTR14C LTR ERVK 1 587 0 215 352 88 11 chr4 158165159 158165250 -26123412 - MIR3 SINE MIR -102 106 9 183 42 0 0 chr4 158166279 158166303 -26122359 + (A)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr4 158168256 158168277 -26120385 + AT_rich Low_complexity Low_complexity 1 21 0 223 214 45 11 chr4 158168306 158168395 -26120267 + (TA)n Simple_repeat Simple_repeat 2 93 0 554 282 86 34 chr4 158168508 158168717 -26119945 + MIR SINE MIR 1 220 -42 1418 181 35 97 chr4 158170412 158170783 -26117879 + MER7A DNA MER2_type 1 346 0 389 398 76 14 chr4 158172479 158172846 -26115816 + HAL1 LINE L1 1148 1537 -970 2119 85 4 0 chr4 158173394 158173706 -26114956 + AluY SINE Alu 1 313 0 24 32 0 0 chr4 158173887 158173918 -26114744 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr4 158174133 158174157 -26114505 + AT_rich Low_complexity Low_complexity 1 24 0 1931 130 0 27 chr4 158174200 158174501 -26114161 - AluSc SINE Alu -16 293 1 180 0 0 0 chr4 158174521 158174541 -26114121 + (TC)n Simple_repeat Simple_repeat 1 20 0 494 258 41 77 chr4 158175786 158176007 -26112655 - L2 LINE L2 -10 3303 3091 420 272 24 41 chr4 158176045 158176214 -26112448 + L1MC5 LINE L1 7731 7896 -65 1373 295 98 19 chr4 158176301 158176870 -26111792 - L2 LINE L2 -337 2977 2364 13522 32 0 3 chr4 158177711 158180114 -26108548 + L1PA2 LINE L1 3751 6155 0 372 254 7 60 chr4 158180133 158180304 -26108358 + L1ME1 LINE L1 147 302 -5903 * 2650 267 67 54 chr4 158180302 158182472 -26106190 + L1ME1 LINE L1 1761 3991 -2224 1595 195 0 17 chr4 158182472 158182759 -26105903 + AluJo SINE Alu 1 282 -30 2650 267 67 54 chr4 158182759 158183088 -26105574 + L1ME1 LINE L1 3991 4314 -1901 1208 254 92 33 chr4 158183084 158183725 -26104937 + L1ME1 LINE L1 4647 5325 -890 * 300 283 107 9 chr4 158183749 158183982 -26104680 + L1ME1 LINE L1 5787 6081 -154 21 36 0 0 chr4 158184828 158184856 -26103806 + AT_rich Low_complexity Low_complexity 1 28 0 205 325 94 35 chr4 158186453 158186656 -26102006 - MIR SINE MIR 0 262 48 27 29 0 0 chr4 158186948 158186982 -26101680 + AT_rich Low_complexity Low_complexity 1 34 0 5013 254 28 50 chr4 158187473 158189379 -26099283 + L1MB7 LINE L1 26 1897 -4749 516 251 86 33 chr4 158189489 158189732 -26098930 + L1MB7 LINE L1 1903 2158 -4488 1895 149 0 0 chr4 158189752 158190061 -26098601 - AluSx SINE Alu 0 309 1 309 272 38 6 chr4 158190093 158190251 -26098411 + L1MB7 LINE L1 2348 2510 -4136 3502 238 109 40 chr4 158190265 158191706 -26096956 + L1MB7 LINE L1 3549 5088 -1556 3327 213 26 64 chr4 158191697 158191870 -26096792 + L1MB7 LINE L1 5724 5902 -780 * 3394 166 48 9 chr4 158191870 158192516 -26096146 + LTR51 LTR ERV1 1 671 0 3327 213 26 64 chr4 158192516 158193333 -26095329 + L1MB7 LINE L1 5902 6674 -8 26 0 0 0 chr4 158193431 158193457 -26095205 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr4 158193884 158193907 -26094755 + AT_rich Low_complexity Low_complexity 1 23 0 207 380 107 0 chr4 158193979 158194100 -26094562 - L2 LINE L2 -1 3271 3138 2122 108 0 3 chr4 158194331 158194641 -26094021 + AluSq SINE Alu 1 309 0 194 272 61 44 chr4 158195263 158195377 -26093285 - L2 LINE L2 -633 2681 2566 22 0 0 0 chr4 158195519 158195541 -26093121 + AT_rich Low_complexity Low_complexity 1 22 0 218 125 25 0 chr4 158195681 158195721 -26092941 + (TTATA)n Simple_repeat Simple_repeat 5 45 0 279 304 0 0 chr4 158197060 158197129 -26091533 + T-rich Low_complexity Low_complexity 4 72 0 445 314 166 33 chr4 158198056 158198479 -26090183 + MLT1H1 LTR MaLR 70 548 -7 42 0 0 0 chr4 158198522 158198564 -26090098 + AT_rich Low_complexity Low_complexity 1 42 0 4027 163 27 58 chr4 158199123 158199969 -26088693 + MER6 DNA MER2_type 46 865 0 1143 169 52 20 chr4 158200396 158200645 -26088017 + MLT2C1 LTR ERVL 1 257 -140 25 0 0 0 chr4 158200988 158201013 -26087649 + AT_rich Low_complexity Low_complexity 1 25 0 889 0 0 0 chr4 158201571 158201670 -26086992 - AluYa5/8 SINE Alu -8 302 204 24 0 0 0 chr4 158202789 158202813 -26085849 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr4 158202962 158202991 -26085671 + AT_rich Low_complexity Low_complexity 1 29 0 203 254 0 0 chr4 158203293 158203356 -26085306 + T-rich Low_complexity Low_complexity 1 63 0 22 0 0 0 chr4 158203514 158203536 -26085126 + AT_rich Low_complexity Low_complexity 1 22 0 343 394 15 0 chr4 158203666 158203803 -26084859 - MIR SINE MIR -110 152 14 1318 243 82 21 chr4 158203837 158204311 -26084351 + Charlie1b DNA MER1_type 21 523 0 2648 125 58 14 chr4 158204738 158205320 -26083342 + MER4E LTR ERV1 1 766 0 367 343 95 34 chr4 158207154 158207542 -26081120 + HAL1b LINE L1 349 760 -588 242 283 66 86 chr4 158207918 158208116 -26080546 - L1MEd LINE L1 -5836 283 90 1552 153 18 3 chr4 158208118 158208400 -26080262 + L1MA9 LINE L1 6025 6310 -2 21 36 0 0 chr4 158208417 158208445 -26080217 + AT_rich Low_complexity Low_complexity 1 28 0 481 350 30 46 chr4 158208973 158209236 -26079426 - MIR SINE MIR -3 259 1 270 388 40 53 chr4 158209797 158210096 -26078566 - L2 LINE L2 -54 3218 2924 879 279 45 54 chr4 158210516 158210961 -26077701 + MER90 LTR ERV1 1 441 -134 469 377 117 9 chr4 158211343 158211993 -26076669 - L2 LINE L2 -434 2880 2161 244 330 50 50 chr4 158212283 158212562 -26076100 - L2 LINE L2 -1257 2057 1779 425 350 102 68 chr4 158213342 158213900 -26074762 - L1M2 LINE L1 -6263 586 10 328 346 45 11 chr4 158214007 158214276 -26074386 - L1MEd LINE L1 -4910 1209 932 444 350 36 0 chr4 158214503 158214697 -26073965 - L1MEd LINE L1 -5458 661 461 303 336 46 0 chr4 158214838 158214969 -26073693 - L1MEd LINE L1 -5957 162 26 2131 112 0 0 chr4 158215709 158216023 -26072639 + AluSq SINE Alu 1 314 0 229 353 63 48 chr4 158217565 158217817 -26070845 - L2 LINE L2 -213 3059 2804 1052 162 5 40 chr4 158217873 158218071 -26070591 - THE1C LTR MaLR -182 193 3 22 0 0 0 chr4 158218110 158218132 -26070530 + AT_rich Low_complexity Low_complexity 1 22 0 215 281 24 12 chr4 158219267 158219349 -26069313 - L2 LINE L2 -2014 1300 1218 362 344 61 0 chr4 158220228 158220408 -26068254 + MIR SINE MIR 66 256 -6 278 329 144 18 chr4 158220621 158220788 -26067874 - L3 LINE CR1 -6 1571 1384 777 301 82 53 chr4 158220810 158221061 -26067601 - L1ME LINE L1 -5529 541 299 1795 251 28 20 chr4 158221061 158221562 -26067100 + MLT1D LTR MaLR 1 505 0 777 301 82 53 chr4 158221562 158221835 -26066827 - L1ME LINE L1 -5771 299 2 350 345 97 38 chr4 158221840 158222182 -26066480 - L3 LINE CR1 -180 1397 1036 4332 168 11 32 chr4 158223599 158224428 -26064234 + L1MA8 LINE L1 5313 6122 -169 21 57 0 0 chr4 158224735 158224770 -26063892 + AT_rich Low_complexity Low_complexity 1 35 0 204 224 0 75 chr4 158225196 158225263 -26063399 + MIR SINE MIR 201 262 0 2091 169 66 7 chr4 158225452 158225861 -26062801 - Tigger2a DNA MER2_type 0 434 2 517 113 50 0 chr4 158226264 158226344 -26062318 + Tigger2 DNA MER2_type 2409 2492 -226 2413 71 3 0 chr4 158226754 158227063 -26061599 + AluY SINE Alu 1 310 -1 200 305 0 0 chr4 158227285 158227344 -26061318 - MIR SINE MIR 0 262 204 260 213 53 27 chr4 158227454 158227529 -26061133 + L2 LINE L2 3221 3297 -16 535 308 50 0 chr4 158227689 158227848 -26060814 - MIR SINE MIR -94 168 2 311 360 7 7 chr4 158228482 158228621 -26060041 + L2 LINE L2 2224 2362 -952 442 215 50 8 chr4 158229730 158229851 -26058811 - MIR SINE MIR -3 259 134 2610 147 18 2 chr4 158230042 158230490 -26058172 + L1PA14 LINE L1 5705 6159 -2 2013 204 24 5 chr4 158230499 158230585 -26058077 + L1M2 LINE L1 5389 5472 -819 2125 97 0 7 chr4 158230585 158230863 -26057799 + AluSq SINE Alu 1 276 -37 2013 204 24 5 chr4 158230863 158231169 -26057493 + L1M2 LINE L1 5472 5792 -499 261 0 0 0 chr4 158231169 158231198 -26057464 + (TG)n Simple_repeat Simple_repeat 2 30 0 2013 204 24 5 chr4 158231198 158231230 -26057432 + L1M2 LINE L1 5792 5822 -469 4056 166 60 4 chr4 158231238 158232060 -26056602 - L1MEd LINE L1 -745 6361 5494 597 193 0 79 chr4 158232068 158232208 -26056454 + FLAM_C SINE Alu 8 136 -7 6224 198 66 5 chr4 158232208 158233777 -26054885 - L1MEd LINE L1 -1609 5497 3832 316 70 18 18 chr4 158233778 158233835 -26054827 + (TTTA)n Simple_repeat Simple_repeat 3 59 0 23150 67 5 2 chr4 158233835 158237712 -26050950 - L1PA6 LINE L1 -16 6138 2245 5379 151 72 28 chr4 158237712 158238681 -26049981 - L1PA6 LINE L1 -5124 1022 11 817 255 64 0 chr4 158238692 158238943 -26049719 - L1MEd LINE L1 -3272 3834 3568 2764 189 63 19 chr4 158238943 158239309 -26049353 + MER73 LTR ERVL 1 406 -238 2366 85 10 0 chr4 158239309 158239616 -26049046 + AluY SINE Alu 1 310 -1 2764 189 63 19 chr4 158239616 158239864 -26048798 + MER73 LTR ERVL 406 642 -2 2730 261 54 64 chr4 158239866 158241616 -26047046 - L1 LINE L1 -3534 3572 2164 207 0 0 0 chr4 158241616 158241639 -26047023 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2730 261 54 64 chr4 158241639 158243050 -26045612 - L1 LINE L1 -4942 2164 740 482 257 80 92 chr4 158243099 158243426 -26045236 - L1MEd LINE L1 -5227 1869 1547 27 0 0 0 chr4 158243438 158243465 -26045197 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr4 158244204 158244228 -26044434 + AT_rich Low_complexity Low_complexity 1 24 0 285 29 0 0 chr4 158244271 158244305 -26044357 + (CA)n Simple_repeat Simple_repeat 1 34 0 1749 199 15 9 chr4 158245164 158245506 -26043156 - MER2 DNA MER2_type 0 344 1 24 0 0 0 chr4 158245841 158245865 -26042797 + AT_rich Low_complexity Low_complexity 1 24 0 210 156 0 0 chr4 158246724 158246769 -26041893 + GA-rich Low_complexity Low_complexity 6 50 0 2235 125 0 0 chr4 158247198 158247511 -26041151 + AluSq SINE Alu 1 313 0 503 245 96 38 chr4 158247926 158248149 -26040513 + L1MB8 LINE L1 5859 6100 -83 2189 122 0 0 chr4 158248444 158248748 -26039914 + AluSq SINE Alu 1 304 -9 663 151 14 14 chr4 158249012 158249151 -26039511 + L1MB8 LINE L1 6031 6169 -9 2151 118 0 0 chr4 158249162 158249449 -26039213 - AluSx SINE Alu -25 287 1 24 32 0 0 chr4 158249449 158249480 -26039182 + AT_rich Low_complexity Low_complexity 1 31 0 201 39 0 0 chr4 158249736 158249762 -26038900 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 726 334 55 52 chr4 158251285 158251455 -26037207 + L2 LINE L2 1111 1279 -2034 2121 134 0 0 chr4 158251455 158251753 -26036909 - AluSx SINE Alu -8 304 7 726 334 55 52 chr4 158251753 158252298 -26036364 + L2 LINE L2 1279 3311 -2 2460 80 0 10 chr4 158252878 158253191 -26035471 - AluSg SINE Alu 0 310 1 24 67 0 0 chr4 158253490 158253535 -26035127 + AT_rich Low_complexity Low_complexity 1 45 0 2509 43 7 3 chr4 158253997 158254296 -26034366 + AluY SINE Alu 1 300 -11 207 0 0 0 chr4 158254296 158254319 -26034343 + (TA)n Simple_repeat Simple_repeat 1 23 0 417 123 0 0 chr4 158254319 158254384 -26034278 + (CA)n Simple_repeat Simple_repeat 2 66 0 21 0 0 0 chr4 158254540 158254561 -26034101 + AT_rich Low_complexity Low_complexity 1 21 0 386 305 125 3 chr4 158255967 158256189 -26032473 + HERVL LTR ERVL 2553 2771 -2883 2095 255 53 49 chr4 158256397 158257467 -26031195 - L1MEc LINE L1 -4957 1439 365 267 209 30 0 chr4 158257479 158257546 -26031116 + L1MA7 LINE L1 5972 6040 -251 2214 137 99 60 chr4 158257549 158258002 -26030660 + L1PA16 LINE L1 5693 6163 -3 1236 145 68 0 chr4 158258003 158258251 -26030411 + L1MA9 LINE L1 6046 6310 -2 27 0 0 0 chr4 158260094 158260121 -26028541 + AT_rich Low_complexity Low_complexity 1 27 0 7452 29 11 21 chr4 158260121 158261344 -26027318 - L1PA4 LINE L1 -3 6152 4936 206 206 16 0 chr4 158261346 158261409 -26027253 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 243 185 19 0 chr4 158261475 158261529 -26027133 + (CA)n Simple_repeat Simple_repeat 2 56 0 636 220 66 62 chr4 158261570 158261797 -26026865 + MLT1D LTR MaLR 1 228 -277 523 314 5 38 chr4 158263204 158263414 -26025248 - MLT1I LTR MaLR -12 397 195 237 261 0 0 chr4 158263433 158263521 -26025141 + (TA)n Simple_repeat Simple_repeat 1 88 0 632 207 80 27 chr4 158263645 158263795 -26024867 - MER63A DNA MER1_type 0 210 53 39 80 0 0 chr4 158264466 158264554 -26024108 + AT_rich Low_complexity Low_complexity 1 88 0 29 47 0 0 chr4 158264762 158264805 -26023857 + AT_rich Low_complexity Low_complexity 1 43 0 273 105 0 0 chr4 158265272 158265310 -26023352 - U2 snRNA snRNA -150 38 1 21 0 0 0 chr4 158265430 158265451 -26023211 + AT_rich Low_complexity Low_complexity 1 21 0 3881 197 29 85 chr4 158265787 158266061 -26022601 + L1MB3 LINE L1 4166 4454 -1729 2193 71 21 0 chr4 158266061 158266341 -26022321 + AluY SINE Alu 1 286 -25 3881 197 29 85 chr4 158266341 158268212 -26020450 + L1MB3 LINE L1 4454 6181 -2 21 57 0 0 chr4 158268335 158268370 -26020292 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 158268392 158268413 -26020249 + AT_rich Low_complexity Low_complexity 1 21 0 28 71 0 0 chr4 158269868 158269924 -26018738 + AT_rich Low_complexity Low_complexity 1 56 0 372 287 129 38 chr4 158269952 158270161 -26018501 + L1M4 LINE L1 2878 3105 -3041 260 308 79 21 chr4 158270621 158270861 -26017801 + L1 LINE L1 3529 3782 -2364 22 35 0 0 chr4 158270937 158270966 -26017696 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr4 158271534 158271572 -26017090 + AT_rich Low_complexity Low_complexity 1 38 0 904 84 8 0 chr4 158274105 158274224 -26014438 + AluSq SINE Alu 1 120 -192 2448 89 130 5 chr4 158274224 158274616 -26014046 + LTR7 LTR ERV1 1 441 -9 15779 95 33 22 chr4 158274625 158277467 -26011195 + HERVH LTR ERV1 1 2995 -4718 6258 76 5 2 chr4 158277446 158278297 -26010365 + HERVH LTR ERV1 3140 3992 -3721 * 4414 142 0 1 chr4 158278300 158278963 -26009699 + HERVH LTR ERV1 4488 5149 -2564 1327 131 28 0 chr4 158278964 158279178 -26009484 + HERVH LTR ERV1 5600 5819 -1894 * 2349 103 50 13 chr4 158279176 158279554 -26009108 + HERVH LTR ERV1 7322 7713 0 2596 80 122 5 chr4 158279554 158279955 -26008707 + LTR7 LTR ERV1 1 448 -2 1291 140 5 0 chr4 158279957 158280150 -26008512 + AluSq SINE Alu 115 308 -5 281 24 49 0 chr4 158280824 158280865 -26007797 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 571 288 24 36 chr4 158281339 158281589 -26007073 + L1M4b LINE L1 1279 1525 -5334 473 207 77 0 chr4 158281583 158281752 -26006910 + L1M4 LINE L1 3120 3301 -2845 * 372 270 10 0 chr4 158281758 158281858 -26006804 - MIR SINE MIR -71 191 91 1866 309 59 45 chr4 158281887 158282029 -26006633 - L2 LINE L2 -32 3281 3142 273 57 0 0 chr4 158282029 158282064 -26006598 + (CA)n Simple_repeat Simple_repeat 1 35 0 1866 309 59 45 chr4 158282064 158283131 -26005531 - L2 LINE L2 -171 3142 2013 575 255 51 57 chr4 158283131 158283514 -26005148 - MLT1H LTR MaLR 0 589 123 223 197 136 0 chr4 158283594 158283660 -26005002 - L2 LINE L2 -1300 2014 1940 24 85 0 0 chr4 158284122 158284181 -26004481 + AT_rich Low_complexity Low_complexity 1 59 0 274 321 115 51 chr4 158285488 158285784 -26002878 + L2 LINE L2 2998 3312 -1 2277 115 80 3 chr4 158286284 158286622 -26002040 + THE1B LTR MaLR 1 364 0 1258 307 72 19 chr4 158288723 158289663 -25998999 + L1M4b LINE L1 1672 2818 -4320 436 225 45 45 chr4 158289701 158289879 -25998783 + L1MEc LINE L1 665 842 -5554 1772 126 0 4 chr4 158290168 158290438 -25998224 + AluSx SINE Alu 39 307 -5 2853 163 26 23 chr4 158290446 158291011 -25997651 - LTR60 LTR ERV1 -19 567 1 2036 249 44 29 chr4 158291037 158291188 -25997474 + L1ME1 LINE L1 5336 5483 -683 2451 48 3 7 chr4 158291188 158291498 -25997164 + AluY SINE Alu 1 309 -2 2036 249 44 29 chr4 158291498 158292001 -25996661 + L1ME1 LINE L1 5483 6000 -166 248 274 62 9 chr4 158292008 158292121 -25996541 + L1ME1 LINE L1 6045 6163 -3 198 0 0 0 chr4 158292466 158292488 -25996174 + (T)n Simple_repeat Simple_repeat 1 22 0 373 268 95 26 chr4 158292976 158293166 -25995496 - MLT1G-int LTR MaLR -839 532 330 459 299 98 22 chr4 158293370 158293594 -25995068 - MLT1G LTR MaLR -117 473 233 23 68 0 0 chr4 158294729 158294773 -25993889 + AT_rich Low_complexity Low_complexity 1 44 0 185 340 87 29 chr4 158295487 158295590 -25993072 + L2 LINE L2 3155 3263 -9 188 304 58 29 chr4 158295601 158295670 -25992992 - L2 LINE L2 -217 3055 2985 4525 205 102 35 chr4 158296173 158297170 -25991492 + L1PBa LINE L1 944 2038 -4825 2176 47 25 78 chr4 158297170 158297490 -25991172 + AluY SINE Alu 1 303 -8 4525 205 102 35 chr4 158297490 158297703 -25990959 + L1PBa LINE L1 2038 2235 -4628 3994 203 37 30 chr4 158297701 158298645 -25990017 + L1 LINE L1 3655 4605 -1541 * 1113 198 48 8 chr4 158298638 158298906 -25989756 + L1 LINE L1 4809 5087 -1059 * 22 0 0 0 chr4 158299035 158299057 -25989605 + AT_rich Low_complexity Low_complexity 1 22 0 487 337 90 34 chr4 158299230 158299732 -25988930 + L1M4 LINE L1 4063 4592 -1554 303 284 74 35 chr4 158300190 158300556 -25988106 + L1MEc LINE L1 787 1166 -5230 231 194 48 0 chr4 158301151 158301213 -25987449 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 259 255 11 43 chr4 158301248 158301342 -25987320 + L1MEc LINE L1 1246 1336 -4879 2241 118 0 0 chr4 158301421 158301725 -25986937 - AluSx SINE Alu 0 312 9 367 290 86 41 chr4 158301801 158302046 -25986616 + L1MEc LINE L1 1543 1798 -4598 221 139 163 0 chr4 158303196 158303239 -25985423 + L2 LINE L2 3264 3313 0 22 0 0 0 chr4 158303468 158303490 -25985172 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 158305254 158305284 -25983378 + AT_rich Low_complexity Low_complexity 1 30 0 2060 108 0 0 chr4 158305390 158305658 -25983004 + AluSg SINE Alu 3 270 -40 243 0 0 0 chr4 158305666 158305693 -25982969 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 7468 225 14 17 chr4 158305712 158306186 -25982476 - L1 LINE L1 -2059 5506 5032 2335 111 6 22 chr4 158306186 158306547 -25982115 - THE1A LTR MaLR 0 355 1 10799 110 15 1 chr4 158306547 158308104 -25980558 - THE1A-int LTR MaLR 0 1580 1 2282 118 6 8 chr4 158308104 158308460 -25980202 - THE1A LTR MaLR 0 355 1 7468 225 14 17 chr4 158308460 158309835 -25978827 - L1 LINE L1 -2530 5035 3662 3974 135 11 7 chr4 158309835 158310444 -25978218 + LTR9 LTR ERV1 1 612 0 908 196 40 12 chr4 158310449 158310622 -25978040 + HUERS-P3 LTR ERV1 5 182 -8737 14844 152 28 62 chr4 158310623 158311330 -25977332 - L1 LINE L1 -4858 2707 1978 1651 199 13 0 chr4 158311330 158311636 -25977026 - AluSx SINE Alu -2 310 1 14844 152 28 62 chr4 158311636 158313716 -25974946 - L1 LINE L1 -5587 1978 14 622 272 52 5 chr4 158314546 158314759 -25973903 - MER58A DNA MER1_type 0 224 2 209 261 11 0 chr4 158315524 158315612 -25973050 + (TA)n Simple_repeat Simple_repeat 1 89 0 959 232 43 92 chr4 158315887 158316301 -25972361 - MSTD LTR MaLR -2 394 1 221 372 56 41 chr4 158316637 158316833 -25971829 - L2 LINE L2 -108 3164 2966 21 0 0 0 chr4 158318227 158318248 -25970414 + AT_rich Low_complexity Low_complexity 1 21 0 269 305 0 0 chr4 158318630 158318710 -25969952 + (TA)n Simple_repeat Simple_repeat 2 84 -12 2204 177 47 0 chr4 158318710 158319116 -25969546 - MSTA LTR MaLR -3 425 1 269 305 0 0 chr4 158319116 158319130 -25969532 + (TA)n Simple_repeat Simple_repeat 83 96 0 324 0 0 0 chr4 158319130 158319166 -25969496 + (CA)n Simple_repeat Simple_repeat 2 37 0 1335 300 151 2 chr4 158319166 158319676 -25968986 - MLT1G LTR MaLR -3 587 2 408 256 90 76 chr4 158320155 158320366 -25968296 + MER20B DNA MER1_type 1 214 -5 186 43 0 0 chr4 158320429 158320452 -25968210 + (CA)n Simple_repeat Simple_repeat 2 24 0 303 292 212 51 chr4 158320973 158321421 -25967241 - L2 LINE L2 -565 2749 2230 31 26 0 0 chr4 158322094 158322132 -25966530 + AT_rich Low_complexity Low_complexity 1 38 0 410 282 14 56 chr4 158322385 158322527 -25966135 - L2 LINE L2 -4 3309 3174 762 293 76 75 chr4 158322610 158323783 -25964879 + L1MEd LINE L1 1 1252 -4867 452 360 69 31 chr4 158323785 158324207 -25964455 + L1MEd LINE L1 1301 1738 -4572 356 260 160 56 chr4 158324457 158325007 -25963655 + L1MEd LINE L1 2295 2901 -3228 24 77 0 0 chr4 158325007 158325059 -25963603 + AT_rich Low_complexity Low_complexity 1 52 0 29 28 0 0 chr4 158325299 158325335 -25963327 + AT_rich Low_complexity Low_complexity 1 36 0 316 216 21 0 chr4 158325364 158325461 -25963201 + (TA)n Simple_repeat Simple_repeat 1 99 0 981 195 34 8 chr4 158325486 158325780 -25962882 - MLT2C1 LTR ERVL -40 357 10 763 230 159 11 chr4 158325832 158326115 -25962547 + L1ME LINE L1 5348 5672 -492 1141 195 33 9 chr4 158326379 158326589 -25962073 - AluJo SINE Alu -19 293 79 3484 237 71 28 chr4 158326899 158327870 -25960792 - MER45B DNA AcHobo -27 1013 1 184 189 0 0 chr4 158328699 158328736 -25959926 - L2 LINE L2 0 3313 3277 225 209 0 0 chr4 158328813 158328856 -25959806 + A-rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr4 158329044 158329072 -25959590 + AT_rich Low_complexity Low_complexity 1 28 0 29 28 0 0 chr4 158329438 158329474 -25959188 + AT_rich Low_complexity Low_complexity 1 36 0 229 181 14 69 chr4 158329648 158329720 -25958942 + L1M2 LINE L1 5508 5575 -737 22 56 0 0 chr4 158329931 158329967 -25958695 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr4 158330277 158330298 -25958364 + AT_rich Low_complexity Low_complexity 1 21 0 2871 216 23 36 chr4 158330843 158331537 -25957125 + L1PBa LINE L1 1 685 -6178 * 6497 152 98 27 chr4 158331521 158331929 -25956733 + L1PBa LINE L1 1577 1955 -4907 1621 151 69 3 chr4 158331929 158332220 -25956442 - AluSx SINE Alu -2 310 1 6497 152 98 27 chr4 158332220 158333243 -25955419 + L1PBa LINE L1 1955 3106 -3756 2039 130 20 0 chr4 158333245 158333546 -25955116 + AluSq SINE Alu 1 307 -6 2217 226 12 0 chr4 158333546 158334029 -25954633 + L1 LINE L1 3218 3706 -3156 22 70 0 0 chr4 158334897 158334940 -25953722 + AT_rich Low_complexity Low_complexity 1 43 0 799 178 55 6 chr4 158335525 158335688 -25952974 - L1PA16 LINE L1 -4 6162 5992 2919 175 59 20 chr4 158337719 158338331 -25950331 + MER73 LTR ERVL 3 638 -6 389 308 70 19 chr4 158338339 158338495 -25950167 - MIR SINE MIR -75 187 24 1013 202 22 169 chr4 158339308 158339887 -25948775 - L1M4 LINE L1 -1778 4368 3875 305 186 143 14 chr4 158339892 158339962 -25948700 - MER58B DNA MER1_type -3 338 260 876 272 107 20 chr4 158340088 158340537 -25948125 - L1M4 LINE L1 -2277 3869 3382 660 249 47 4 chr4 158340640 158340873 -25947789 - L1M4 LINE L1 -3167 2979 2737 13159 197 59 16 chr4 158340873 158343569 -25945093 + ERVL LTR ERVL 2952 5764 0 2514 192 58 48 chr4 158344490 158344998 -25943664 - L1MA9 LINE L1 0 6312 5810 678 85 0 0 chr4 158344998 158345092 -25943570 + (TA)n Simple_repeat Simple_repeat 1 94 0 2514 192 58 48 chr4 158345092 158345234 -25943428 - L1MA9 LINE L1 -502 5810 5653 5123 121 14 22 chr4 158345234 158346967 -25941695 - L1PA16 LINE L1 -1 6165 4480 590 190 31 49 chr4 158346984 158347147 -25941515 + L1 LINE L1 2906 3065 -3081 2469 214 7 5 chr4 158347158 158347715 -25940947 - L1MA9 LINE L1 -1677 4469 3912 2458 152 29 19 chr4 158347713 158348495 -25940167 - L1M2 LINE L1 -613 5678 4895 * 7118 195 58 31 chr4 158348508 158350002 -25938660 + L1 LINE L1 2916 4476 -1670 2024 125 0 11 chr4 158350002 158350314 -25938348 + AluSx SINE Alu 1 309 0 7118 195 58 31 chr4 158350314 158350732 -25937930 + L1 LINE L1 4476 4881 -1265 422 308 46 27 chr4 158353401 158353661 -25935001 + L1M4 LINE L1 2393 2657 -3489 7614 14 1 2 chr4 158353804 158355256 -25933406 - L1HS LINE L1 -33 6122 4672 2044 51 7 0 chr4 158355253 158355526 -25933136 - L1P LINE L1 -5867 279 5 * 2087 82 7 10 chr4 158355553 158355845 -25932817 + AluY SINE Alu 1 291 -20 26 50 0 0 chr4 158355849 158355889 -25932773 + AT_rich Low_complexity Low_complexity 1 40 0 361 321 112 48 chr4 158356648 158356978 -25931684 + L1ME LINE L1 33 383 -5687 756 168 60 0 chr4 158357271 158357420 -25931242 - MER2 DNA MER2_type -42 303 146 263 229 0 0 chr4 158357432 158357505 -25931157 - L1MEc LINE L1 -3787 2428 2362 293 76 61 0 chr4 158357589 158357655 -25931007 + (TA)n Simple_repeat Simple_repeat 2 71 0 847 256 106 14 chr4 158357658 158358006 -25930656 + L1ME LINE L1 2307 2686 -3394 1171 229 7 25 chr4 158358013 158358293 -25930369 + AluJo SINE Alu 38 312 0 305 252 30 30 chr4 158358342 158358477 -25930185 + L1ME LINE L1 2725 2859 -3221 458 292 216 24 chr4 158358719 158359130 -25929532 + MLT1H LTR MaLR 60 549 0 23 68 0 0 chr4 158359370 158359414 -25929248 + AT_rich Low_complexity Low_complexity 1 44 0 2138 118 51 25 chr4 158359443 158359798 -25928864 + THE1B LTR MaLR 1 364 0 11461 99 9 2 chr4 158359798 158361367 -25927295 + THE1B-int LTR MaLR 1 1580 0 2245 104 51 25 chr4 158361367 158361722 -25926940 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr4 158366027 158366048 -25922614 + AT_rich Low_complexity Low_complexity 1 21 0 270 389 31 12 chr4 158368207 158368369 -25920293 + MER5B DNA MER1_type 2 166 -12 709 174 0 54 chr4 158368603 158368752 -25919910 - FLAM_C SINE Alu 0 143 3 376 227 0 21 chr4 158371209 158371306 -25917356 - L1PB4 LINE L1 0 6156 6062 11144 192 41 8 chr4 158371866 158375390 -25913272 - L1PB2 LINE L1 0 6151 2512 189 0 0 0 chr4 158375400 158375421 -25913241 + (T)n Simple_repeat Simple_repeat 1 21 0 1455 108 108 4 chr4 158376097 158376337 -25912325 - L1PA8 LINE L1 -6 6166 5902 24 32 0 0 chr4 158376962 158376993 -25911669 + AT_rich Low_complexity Low_complexity 1 31 0 341 236 179 42 chr4 158377370 158377633 -25911029 + Charlie2 DNA MER1_type 2532 2830 -32 246 288 91 23 chr4 158377645 158377777 -25910885 + L2 LINE L2 2150 2290 -1024 831 232 191 0 chr4 158377912 158378184 -25910478 + MER33 DNA MER1_type 1 324 0 206 105 26 0 chr4 158378188 158378226 -25910436 + (TATAA)n Simple_repeat Simple_repeat 2 40 0 338 293 100 33 chr4 158378242 158378392 -25910270 - L2 LINE L2 -232 3081 2922 289 348 71 5 chr4 158378515 158378699 -25909963 + L2 LINE L2 2475 2670 -644 437 309 106 9 chr4 158378725 158378942 -25909720 - MLT1I LTR MaLR -41 368 131 21 36 0 0 chr4 158379116 158379144 -25909518 + AT_rich Low_complexity Low_complexity 1 28 0 226 224 0 0 chr4 158381359 158381408 -25907254 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 2078 175 24 112 chr4 158381827 158382443 -25906219 - L1 LINE L1 -1798 4348 3787 1845 174 58 40 chr4 158382443 158382977 -25905685 + MLT2A2 LTR ERVL 1 554 0 838 208 73 0 chr4 158382977 158383169 -25905493 - L1 LINE L1 -2355 3791 3586 * 4132 188 17 26 chr4 158383155 158384321 -25904341 + L1M2 LINE L1 4475 5623 -689 231 0 0 71 chr4 158384374 158384416 -25904246 + (CATA)n Simple_repeat Simple_repeat 2 40 0 30 59 0 0 chr4 158384462 158384513 -25904149 + AT_rich Low_complexity Low_complexity 1 51 0 210 271 0 34 chr4 158384578 158384696 -25903966 + T-rich Low_complexity Low_complexity 4 117 0 242 331 47 63 chr4 158385400 158385527 -25903135 - MER91A DNA MER1_type -50 146 22 206 250 14 0 chr4 158385708 158385780 -25902882 + CT-rich Low_complexity Low_complexity 4 76 0 476 94 0 0 chr4 158385950 158386014 -25902648 + MLT1A2 LTR MaLR 264 327 -47 23 33 0 0 chr4 158386650 158386680 -25901982 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr4 158386703 158386740 -25901922 + AT_rich Low_complexity Low_complexity 1 37 0 1332 205 120 6 chr4 158387179 158387496 -25901166 - L1PA16 LINE L1 -4 6162 5810 338 228 38 13 chr4 158388555 158388634 -25900028 + Tigger5 DNA MER2_type 1 81 -2242 13047 36 0 0 chr4 158388634 158390228 -25898434 - L1PA3 LINE L1 -1887 4259 2666 9119 33 0 0 chr4 158390228 158392108 -25896554 + L1PA3 LINE L1 4272 6151 -4 1415 160 23 4 chr4 158392137 158392393 -25896269 + Tigger5 DNA MER2_type 2062 2322 -1 348 236 0 0 chr4 158392993 158393065 -25895597 - Tigger5 DNA MER2_type -1 2322 2251 280 211 0 0 chr4 158393034 158393086 -25895576 - Tigger5 DNA MER2_type -2268 55 4 * 1627 128 103 11 chr4 158393148 158393421 -25895241 - AluSx SINE Alu -9 303 6 372 279 0 0 chr4 158394371 158394450 -25894212 + MER77 LTR ERV1 523 601 -4 275 91 23 0 chr4 158394563 158394607 -25894055 + MADE1 DNA Mariner 6 50 -30 29 47 0 0 chr4 158395907 158395950 -25892712 + AT_rich Low_complexity Low_complexity 1 43 0 1852 128 33 7 chr4 158396953 158397270 -25891392 + AluSg SINE Alu 1 324 0 23 0 0 0 chr4 158397495 158397518 -25891144 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr4 158397821 158397846 -25890816 + AT_rich Low_complexity Low_complexity 1 25 0 1919 152 0 17 chr4 158397880 158398176 -25890486 - AluSx SINE Alu -21 291 1 6618 198 167 30 chr4 158398733 158400277 -25888385 - MER52A LTR ERV1 0 1755 1 534 214 53 71 chr4 158400379 158400637 -25888025 + MSTD LTR MaLR 1 253 -112 2030 169 102 0 chr4 158400637 158401028 -25887634 + LTR51 LTR ERV1 1 431 -240 776 168 8 0 chr4 158401031 158401162 -25887500 + LTR51 LTR ERV1 540 671 0 539 143 44 0 chr4 158401186 158401277 -25887385 + MSTD LTR MaLR 302 396 0 6067 236 91 33 chr4 158401277 158402911 -25885751 + MSTD-int LTR MaLR 1 1729 -6 890 236 61 32 chr4 158402912 158403249 -25885413 + MSTD LTR MaLR 4 396 0 527 250 245 5 chr4 158403656 158403840 -25884822 - MIR SINE MIR -1 261 34 276 207 52 0 chr4 158403976 158404034 -25884628 - MER5B DNA MER1_type -117 61 1 32 0 0 0 chr4 158404093 158404125 -25884537 + AT_rich Low_complexity Low_complexity 1 32 0 203 227 15 0 chr4 158404497 158404563 -25884099 + (CATATA)n Simple_repeat Simple_repeat 5 71 0 292 330 106 27 chr4 158405400 158405964 -25882698 + HAL1b LINE L1 9 617 -731 26 30 0 0 chr4 158406475 158406508 -25882154 + AT_rich Low_complexity Low_complexity 1 33 0 322 322 107 9 chr4 158407229 158407462 -25881200 - L1M4 LINE L1 -1603 4543 4288 25 0 0 0 chr4 158408274 158408299 -25880363 + AT_rich Low_complexity Low_complexity 1 25 0 21 82 0 0 chr4 158408588 158408637 -25880025 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr4 158408867 158408888 -25879774 + AT_rich Low_complexity Low_complexity 1 21 0 1803 123 0 0 chr4 158409252 158409505 -25879157 + AluSq SINE Alu 1 253 -60 25 51 0 0 chr4 158409740 158409779 -25878883 + AT_rich Low_complexity Low_complexity 1 39 0 32 26 0 0 chr4 158409870 158409909 -25878753 + AT_rich Low_complexity Low_complexity 1 39 0 243 317 73 0 chr4 158409983 158410147 -25878515 - Zaphod DNA AcHobo -3438 593 418 21 0 0 0 chr4 158410628 158410649 -25878013 + AT_rich Low_complexity Low_complexity 1 21 0 622 272 30 60 chr4 158411987 158412219 -25876443 + MIR SINE MIR 12 236 -26 2024 128 62 14 chr4 158412225 158412583 -25876079 + THE1C LTR MaLR 1 375 0 10093 128 9 29 chr4 158412583 158414194 -25874468 + THE1C-int LTR MaLR 1 1580 0 842 151 8 0 chr4 158414196 158414322 -25874340 + THE1C LTR MaLR 3 129 -246 328 118 13 145 chr4 158414315 158414337 -25874325 + THE1C LTR MaLR 310 333 -42 * 2690 88 3 0 chr4 158414337 158414689 -25873973 + THE1A LTR MaLR 1 353 -2 10788 125 5 2 chr4 158414692 158416267 -25872395 + THE1A-int LTR MaLR 2 1580 0 1988 171 32 0 chr4 158416267 158416611 -25872051 + THE1A LTR MaLR 1 355 0 328 118 13 145 chr4 158416611 158416659 -25872003 + THE1C LTR MaLR 333 375 0 404 185 43 22 chr4 158416720 158416812 -25871850 + Tigger5 DNA MER2_type 2 95 -2228 294 136 0 0 chr4 158416811 158416855 -25871807 + Tigger5 DNA MER2_type 2280 2323 0 * 23 0 0 0 chr4 158417012 158417035 -25871627 + AT_rich Low_complexity Low_complexity 1 23 0 2138 121 0 7 chr4 158417102 158417400 -25871262 + AluSg SINE Alu 1 296 -14 29 84 0 0 chr4 158418548 158418619 -25870043 + AT_rich Low_complexity Low_complexity 1 71 0 609 265 85 14 chr4 158419691 158419902 -25868760 - MIR SINE MIR 0 262 37 36 23 0 0 chr4 158420054 158420097 -25868565 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr4 158420428 158420449 -25868213 + AT_rich Low_complexity Low_complexity 1 21 0 216 286 0 16 chr4 158420890 158420953 -25867709 - MIR SINE MIR -7 255 194 339 208 78 0 chr4 158420984 158421061 -25867601 - MER97c DNA MER1_type? 0 1090 1008 244 270 90 22 chr4 158421379 158421468 -25867194 + MLT1L LTR MaLR 296 390 -225 2085 95 0 11 chr4 158421493 158421778 -25866884 + AluY SINE Alu 1 282 -29 200 191 21 0 chr4 158422140 158422187 -25866475 + L2 LINE L2 3266 3313 0 1655 146 98 9 chr4 158423797 158424112 -25864550 - MER61A LTR ERV1 0 343 1 23934 99 30 20 chr4 158424115 158427666 -25860996 - MER61A-int LTR ERV1 -4 5213 1542 1678 109 0 0 chr4 158427666 158427922 -25860740 - AluSc SINE Alu 0 316 61 23934 99 30 20 chr4 158427922 158428059 -25860603 - MER61A-int LTR ERV1 -3675 1542 1408 392 138 33 27 chr4 158428087 158428200 -25860462 - MER61A-int LTR ERV1 -4440 777 631 2184 171 60 33 chr4 158428284 158428770 -25859892 - MER61A-int LTR ERV1 -4718 499 1 1585 151 94 16 chr4 158428770 158429088 -25859574 - MER61A LTR ERV1 0 343 1 390 279 172 7 chr4 158429088 158429332 -25859330 - LTR50 LTR ERVL -198 597 217 253 275 58 0 chr4 158429334 158429403 -25859259 - LTR50 LTR ERVL -722 73 1 27 29 0 0 chr4 158429720 158429754 -25858908 + AT_rich Low_complexity Low_complexity 1 34 0 3646 219 82 7 chr4 158430254 158431389 -25857273 + L1MB7 LINE L1 4109 5333 -824 518 221 0 80 chr4 158431391 158431502 -25857160 + L1MB1 LINE L1 6023 6119 -70 1600 197 32 3 chr4 158431502 158431786 -25856876 + AluJb SINE Alu 3 294 -18 518 221 0 80 chr4 158431786 158431837 -25856825 + L1MB1 LINE L1 6119 6172 -17 2873 197 91 24 chr4 158431864 158432667 -25855995 + L1MB7 LINE L1 5318 6174 -10 23 86 0 0 chr4 158433875 158433933 -25854729 + AT_rich Low_complexity Low_complexity 1 58 0 22 0 0 0 chr4 158434307 158434329 -25854333 + AT_rich Low_complexity Low_complexity 1 22 0 1934 137 85 20 chr4 158434335 158434677 -25853985 - THE1B LTR MaLR 0 364 1 10143 108 4 0 chr4 158434677 158436248 -25852414 - THE1B-int LTR MaLR 0 1580 1 1959 140 63 20 chr4 158436248 158436597 -25852065 - THE1B LTR MaLR 0 364 1 191 316 137 0 chr4 158436954 158437049 -25851613 - L2 LINE L2 -7 3306 3199 534 104 0 0 chr4 158437107 158437184 -25851478 - THE1-int LTR MaLR -1338 242 166 567 212 71 114 chr4 158437227 158437730 -25850932 + LTR27 LTR ERV1 283 1305 -141 917 279 110 23 chr4 158437935 158438362 -25850300 - L1ME3A LINE L1 -214 5956 5493 884 195 0 0 chr4 158438684 158438833 -25849829 - AluSg/x SINE Alu -9 303 155 30 59 0 0 chr4 158439227 158439278 -25849384 + AT_rich Low_complexity Low_complexity 1 51 0 33 25 0 0 chr4 158439311 158439351 -25849311 + AT_rich Low_complexity Low_complexity 1 40 0 357 24 0 0 chr4 158439549 158439591 -25849071 + (A)n Simple_repeat Simple_repeat 1 42 0 477 271 174 13 chr4 158440109 158440264 -25848398 - MER5A DNA MER1_type 0 189 10 394 386 70 19 chr4 158440277 158440749 -25847913 + L2 LINE L2 2255 2750 -564 267 364 62 8 chr4 158441056 158441185 -25847477 + L2 LINE L2 3101 3236 -36 2029 173 3 32 chr4 158441603 158441838 -25846824 - MLT1A1 LTR MaLR -1 364 142 2369 114 27 8 chr4 158441838 158442206 -25846456 - THE1C LTR MaLR 0 375 1 2029 173 3 32 chr4 158442206 158442341 -25846321 - MLT1A1 LTR MaLR -223 142 5 22 0 0 0 chr4 158443021 158443043 -25845619 + AT_rich Low_complexity Low_complexity 1 22 0 255 31 0 0 chr4 158443467 158443499 -25845163 + (TA)n Simple_repeat Simple_repeat 2 33 0 23 0 0 0 chr4 158443559 158443582 -25845080 + AT_rich Low_complexity Low_complexity 1 23 0 225 154 0 0 chr4 158444671 158444710 -25843952 + (TA)n Simple_repeat Simple_repeat 1 39 0 21 36 0 0 chr4 158445072 158445100 -25843562 + AT_rich Low_complexity Low_complexity 1 28 0 959 160 0 72 chr4 158446195 158446389 -25842273 - AluSx SINE Alu 0 309 130 267 152 0 0 chr4 158446392 158446438 -25842224 + T-rich Low_complexity Low_complexity 1 46 0 867 150 0 0 chr4 158446438 158446565 -25842097 - AluSx SINE Alu -179 133 7 743 313 29 16 chr4 158447361 158447607 -25841055 - MIR SINE MIR -1 261 13 309 313 7 5 chr4 158447906 158448035 -25840627 - MLT1G LTR MaLR -139 451 254 4103 239 31 25 chr4 158448067 158448697 -25839965 + MER45B DNA AcHobo 15 655 -926 1388 193 6 44 chr4 158448697 158449018 -25839644 + AluJo SINE Alu 1 309 -3 4103 239 31 25 chr4 158449018 158449406 -25839256 + MER45B DNA AcHobo 655 1039 -1 286 293 28 9 chr4 158450446 158450552 -25838110 + HsTC2 DNA Tc2 21 128 -1770 635 297 93 7 chr4 158450580 158450880 -25837782 + HsTC2 DNA Tc2 1274 1599 -299 317 233 0 56 chr4 158450943 158451033 -25837629 + HsTC2 DNA Tc2 1796 1880 -18 227 273 91 11 chr4 158453868 158453956 -25834706 + L1MEd LINE L1 571 665 -5454 931 278 136 41 chr4 158454019 158454512 -25834150 + L1ME LINE L1 46 585 -5485 1763 260 93 43 chr4 158454852 158455751 -25832911 + L1ME LINE L1 46 989 -5081 21 0 0 0 chr4 158455923 158455944 -25832718 + AT_rich Low_complexity Low_complexity 1 21 0 467 280 48 8 chr4 158456708 158456845 -25831817 - MIR SINE MIR -41 167 23 2177 103 3 16 chr4 158457654 158457964 -25830698 + AluSq SINE Alu 3 308 -5 273 336 8 47 chr4 158458992 158459154 -25829508 - MIR3 SINE MIR -49 159 6 575 283 78 30 chr4 158459239 158459469 -25829193 + MIR SINE MIR 12 252 -10 186 103 0 0 chr4 158459474 158459503 -25829159 + (CAT)n Simple_repeat Simple_repeat 3 31 0 247 273 136 78 chr4 158459591 158459708 -25828954 + L2 LINE L2 2899 3029 -284 2111 128 3 0 chr4 158459708 158460013 -25828649 + AluSq SINE Alu 1 306 -7 247 273 136 78 chr4 158460013 158460049 -25828613 + L2 LINE L2 3029 3061 -252 1992 62 4 0 chr4 158461354 158461614 -25827048 - L1PA8 LINE L1 -219 5953 5693 1617 81 9 0 chr4 158461614 158461836 -25826826 + L1PA8 LINE L1 5944 6167 -5 708 128 64 24 chr4 158463246 158463371 -25825291 - FLAM_C SINE Alu -3 130 1 303 28 0 0 chr4 158463427 158463463 -25825199 + (TC)n Simple_repeat Simple_repeat 1 36 0 258 81 0 0 chr4 158463462 158463499 -25825163 + (CA)n Simple_repeat Simple_repeat 1 37 0 * 570 349 39 12 chr4 158464696 158464951 -25823711 - MIR SINE MIR 0 262 1 320 292 80 7 chr4 158465286 158465423 -25823239 + MIR SINE MIR 114 260 -2 1163 218 136 15 chr4 158465925 158466255 -25822407 + L1ME1 LINE L1 5698 6067 -99 243 196 0 18 chr4 158466271 158466327 -25822335 - MER45 DNA AcHobo -34 1547 1493 323 89 0 36 chr4 158466329 158466385 -25822277 - MADE1 DNA Mariner 0 80 27 559 294 61 33 chr4 158466424 158466669 -25821993 - L1MC5 LINE L1 -1085 6876 6625 505 294 18 50 chr4 158467184 158467466 -25821196 - HAL1b LINE L1 -774 574 302 334 305 68 62 chr4 158467500 158467884 -25820778 - HAL1 LINE L1 -1179 1328 943 23 33 0 0 chr4 158467946 158467976 -25820686 + AT_rich Low_complexity Low_complexity 1 30 0 2235 109 0 0 chr4 158469806 158470099 -25818563 - AluSg SINE Alu -17 293 1 463 333 70 22 chr4 158470873 158471101 -25817561 + L2 LINE L2 220 458 -2856 533 269 167 11 chr4 158471101 158471287 -25817375 - MIR SINE MIR -2 260 46 392 345 85 22 chr4 158471332 158471555 -25817107 + L2 LINE L2 459 695 -2619 271 308 48 19 chr4 158471627 158471731 -25816931 + L2 LINE L2 859 965 -2349 873 300 30 49 chr4 158471737 158472107 -25816555 + L2 LINE L2 1220 1582 -1732 472 274 86 34 chr4 158472110 158472344 -25816318 + L2 LINE L2 1839 2084 -1230 274 262 47 19 chr4 158474258 158474365 -25814297 - MER103 DNA DNA -3 163 54 2296 73 0 14 chr4 158474842 158475156 -25813506 - AluYa5 SINE Alu 0 310 1 1099 206 109 35 chr4 158475338 158475678 -25812984 + MLT1A1 LTR MaLR 1 365 0 659 111 0 8 chr4 158475780 158475897 -25812765 + (TTC)n Simple_repeat Simple_repeat 1 116 0 763 95 9 0 chr4 158476939 158477044 -25811618 - THE1C LTR MaLR 0 375 270 5949 101 8 47 chr4 158477044 158477967 -25810695 - THE1C-int LTR MaLR -693 887 1 2374 137 13 8 chr4 158477967 158478340 -25810322 - THE1C LTR MaLR 0 375 1 231 283 71 10 chr4 158478640 158478739 -25809923 - MLT1J2 LTR MaLR -326 124 20 1612 166 25 56 chr4 158481555 158481875 -25806787 + AluJb SINE Alu 1 310 -2 237 340 32 21 chr4 158481927 158482021 -25806641 - MIR3 SINE MIR -25 183 89 2084 174 5 8 chr4 158482718 158483085 -25805577 - MER47A DNA MER2_type 0 366 1 267 310 14 0 chr4 158483100 158483171 -25805491 - MER2 DNA MER2_type -1 344 273 191 36 36 0 chr4 158483191 158483219 -25805443 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 25 65 0 0 chr4 158483224 158483270 -25805392 + AT_rich Low_complexity Low_complexity 1 46 0 1274 146 5 5 chr4 158483270 158483475 -25805187 - MER2 DNA MER2_type -139 206 2 1194 264 19 17 chr4 158483959 158484319 -25804343 + MLT1A1 LTR MaLR 5 365 0 405 225 58 4 chr4 158485410 158485526 -25803136 - L1MA9 LINE L1 -7 6288 6167 1022 166 21 0 chr4 158485581 158485768 -25802894 - L1MA9 LINE L1 -259 6053 5863 180 0 0 0 chr4 158485951 158485971 -25802691 + (CA)n Simple_repeat Simple_repeat 1 20 0 229 96 19 39 chr4 158490137 158490189 -25798473 + (TTTTG)n Simple_repeat Simple_repeat 1 51 0 2150 97 27 3 chr4 158490744 158491044 -25797618 + AluSc SINE Alu 1 307 -2 5643 171 88 22 chr4 158491054 158496932 -25791730 + L1PA10 LINE L1 20 6482 -1 207 108 0 27 chr4 158497773 158497810 -25790852 + (TA)n Simple_repeat Simple_repeat 1 36 0 2221 114 0 0 chr4 158498461 158498758 -25789904 + AluSx SINE Alu 1 297 -15 2801 54 0 0 chr4 158498762 158499113 -25789549 + L1PA5 LINE L1 5800 6150 -4 221 296 71 51 chr4 158500452 158500550 -25788112 + MIR3 SINE MIR 81 180 -28 254 301 48 12 chr4 158500915 158500998 -25787664 - L2 LINE L2 -36 3277 3192 231 279 0 0 chr4 158501348 158501409 -25787253 - HAL1b LINE L1 -665 683 623 505 291 132 52 chr4 158501435 158501995 -25786667 - HAL1b LINE L1 -679 669 65 340 287 274 0 chr4 158504160 158504324 -25784338 + MIR SINE MIR 30 238 -24 * 640 344 123 19 chr4 158504302 158504773 -25783889 - L2 LINE L2 -673 2641 2122 22 80 0 0 chr4 158504950 158505000 -25783662 + AT_rich Low_complexity Low_complexity 1 50 0 513 257 15 15 chr4 158505416 158505552 -25783110 + MIR SINE MIR 114 249 -13 34 42 0 0 chr4 158505608 158505656 -25783006 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr4 158505763 158505785 -25782877 + AT_rich Low_complexity Low_complexity 1 22 0 559 241 90 6 chr4 158506100 158506266 -25782396 + L1MC4 LINE L1 7787 7966 -76 231 146 0 0 chr4 158506268 158506309 -25782353 + (TAAAA)n Simple_repeat Simple_repeat 4 44 0 2108 122 0 0 chr4 158506497 158506791 -25781871 - AluSx SINE Alu -16 296 3 428 287 158 30 chr4 158507150 158507352 -25781310 + LTR16A1 LTR ERVL 216 443 -14 214 279 29 0 chr4 158507797 158507901 -25780761 + (TA)n Simple_repeat Simple_repeat 2 108 0 2106 124 0 0 chr4 158507906 158508197 -25780465 - AluSx SINE Alu -19 293 3 23 33 0 0 chr4 158508946 158508976 -25779686 + AT_rich Low_complexity Low_complexity 1 30 0 206 169 34 45 chr4 158509085 158509174 -25779488 + (CAAA)n Simple_repeat Simple_repeat 4 91 0 1332 247 106 42 chr4 158509946 158510439 -25778223 + MLT1F1 LTR MaLR 58 567 0 474 279 126 0 chr4 158511078 158511268 -25777394 - MER57A LTR ERV1 -25 378 165 4152 190 29 20 chr4 158511327 158512213 -25776449 - L1MA7 LINE L1 0 6291 5398 * 4413 205 53 22 chr4 158512212 158513558 -25775104 + L1MA7 LINE L1 3957 5367 -779 248 109 0 22 chr4 158514548 158514594 -25774068 + (CAATT)n Simple_repeat Simple_repeat 4 48 0 27 0 0 0 chr4 158515861 158515888 -25772774 + AT_rich Low_complexity Low_complexity 1 27 0 265 167 74 0 chr4 158515956 158516010 -25772652 + MIR SINE MIR 122 179 -83 711 266 78 7 chr4 158516325 158516596 -25772066 + LTR41 LTR ERVL 1 290 -483 430 307 40 67 chr4 158516667 158516967 -25771695 - L1MC/D LINE L1 -2458 5584 5293 256 111 111 0 chr4 158517008 158517053 -25771609 - Cheshire DNA MER1_type -1526 894 845 326 333 0 0 chr4 158517062 158517140 -25771522 - Cheshire DNA MER1_type -2341 79 2 284 244 56 0 chr4 158517145 158517235 -25771427 - L1MC/D LINE L1 -831 5315 5221 361 221 107 46 chr4 158517623 158517754 -25770908 + MIR SINE MIR 124 262 0 23 101 0 0 chr4 158518062 158518141 -25770521 + AT_rich Low_complexity Low_complexity 1 79 0 371 337 98 0 chr4 158518185 158518431 -25770231 - L1MEc LINE L1 -4751 1559 1290 592 279 125 58 chr4 158518482 158519080 -25769582 - L1MEc LINE L1 -4862 1257 620 297 0 0 0 chr4 158519100 158519133 -25769529 + (TG)n Simple_repeat Simple_repeat 1 33 0 234 288 128 48 chr4 158519674 158519799 -25768863 + L2 LINE L2 3179 3313 0 22 56 0 0 chr4 158521588 158521624 -25767038 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr4 158521965 158521988 -25766674 + AT_rich Low_complexity Low_complexity 1 23 0 31 0 0 0 chr4 158522080 158522111 -25766551 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr4 158522422 158522446 -25766216 + AT_rich Low_complexity Low_complexity 1 24 0 257 266 71 35 chr4 158522742 158522855 -25765807 + MIR SINE MIR 84 200 -62 230 269 39 0 chr4 158524029 158524107 -25764555 + (CAA)n Simple_repeat Simple_repeat 2 82 0 384 353 15 0 chr4 158525217 158525353 -25763309 - MIR SINE MIR -73 189 52 202 336 26 52 chr4 158525418 158525534 -25763128 - MIR3 SINE MIR -49 159 47 21 0 0 0 chr4 158525701 158525722 -25762940 + AT_rich Low_complexity Low_complexity 1 21 0 490 300 125 20 chr4 158526753 158526953 -25761709 + MIR SINE MIR 27 247 -15 2117 128 0 3 chr4 158527502 158527806 -25760856 - AluSx SINE Alu -9 303 1 310 289 0 12 chr4 158527953 158528036 -25760626 + MER81 DNA DNA 13 94 -20 461 288 152 10 chr4 158528660 158528858 -25759804 + MIR SINE MIR 37 262 0 306 0 0 0 chr4 158529613 158529647 -25759015 + (CA)n Simple_repeat Simple_repeat 2 35 0 304 389 56 6 chr4 158531184 158531346 -25757316 + MIR3 SINE MIR 30 199 -9 317 291 143 22 chr4 158531529 158531711 -25756951 + MIR SINE MIR 3 206 -56 3496 198 21 75 chr4 158531771 158532795 -25755867 + LTR5 LTR ERVK 1 969 0 283 345 142 0 chr4 158532889 158533037 -25755625 - MIR3 SINE MIR -1 207 39 23 0 0 0 chr4 158533405 158533428 -25755234 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr4 158534082 158534104 -25754558 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr4 158534731 158534768 -25753894 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr4 158535450 158535474 -25753188 + AT_rich Low_complexity Low_complexity 1 24 0 455 233 0 0 chr4 158539003 158539116 -25749546 - MLT1D LTR MaLR -20 485 399 * 1193 279 148 16 chr4 158539112 158539552 -25749110 + MLT1H1 LTR MaLR 58 555 0 24 0 0 0 chr4 158539649 158539673 -25748989 + AT_rich Low_complexity Low_complexity 1 24 0 5689 201 59 17 chr4 158540071 158542592 -25746070 + L1MA8 LINE L1 3647 6280 -11 2126 123 3 0 chr4 158542881 158543190 -25745472 + AluSx SINE Alu 1 310 -2 406 205 60 0 chr4 158543626 158543709 -25744953 + MER5A DNA MER1_type 96 183 -6 2554 270 84 49 chr4 158544019 158545465 -25743197 + L1MCc LINE L1 17 1558 -5230 1320 197 79 55 chr4 158545465 158545846 -25742816 + MLT1B LTR MaLR 1 390 0 2554 270 84 49 chr4 158545846 158546196 -25742466 + L1MCc LINE L1 1558 1894 -4894 1193 139 0 0 chr4 158546299 158546471 -25742191 - AluY SINE Alu -139 172 1 202 120 20 40 chr4 158546485 158546535 -25742127 + (TTATA)n Simple_repeat Simple_repeat 2 50 0 858 150 88 47 chr4 158546807 158546962 -25741700 + MLT1A1 LTR MaLR 1 167 -198 2338 90 3 0 chr4 158546962 158547263 -25741399 + AluSq SINE Alu 1 302 -11 858 150 88 47 chr4 158547263 158547300 -25741362 + MLT1A1 LTR MaLR 167 201 -164 33 25 0 0 chr4 158547846 158547886 -25740776 + AT_rich Low_complexity Low_complexity 1 40 0 2021 103 37 0 chr4 158548232 158548538 -25740124 + AluSx SINE Alu 1 316 0 215 218 16 16 chr4 158548715 158548839 -25739823 + (TA)n Simple_repeat Simple_repeat 2 125 0 300 237 79 13 chr4 158552081 158552157 -25736505 - LTR67 LTR ERVL 0 557 477 1577 101 22 0 chr4 158552157 158552385 -25736277 - THE1C-int LTR MaLR -1345 235 3 1829 158 49 25 chr4 158552387 158552753 -25735909 - THE1C LTR MaLR 0 375 1 974 138 0 50 chr4 158552753 158552912 -25735750 - AluJb SINE Alu -161 151 1 22 80 0 0 chr4 158554410 158554460 -25734202 + AT_rich Low_complexity Low_complexity 1 50 0 1888 147 17 0 chr4 158554655 158554954 -25733708 + AluSq SINE Alu 1 304 -9 1505 186 62 34 chr4 158555161 158555516 -25733146 - MLT1A1 LTR MaLR 0 365 1 1795 187 0 7 chr4 158555573 158555883 -25732779 - AluJo SINE Alu -4 308 1 324 248 0 0 chr4 158556398 158556499 -25732163 + GA-rich Low_complexity Low_complexity 1 101 0 192 197 333 0 chr4 158558183 158558249 -25730413 + MIR SINE MIR 18 105 -103 22 0 0 0 chr4 158558456 158558478 -25730184 + AT_rich Low_complexity Low_complexity 1 22 0 24 77 0 0 chr4 158560840 158560892 -25727770 + AT_rich Low_complexity Low_complexity 1 52 0 348 43 0 0 chr4 158561031 158561078 -25727584 - L1PA5 LINE L1 0 6154 6108 1581 100 0 5 chr4 158561178 158561388 -25727274 - AluSx SINE Alu -103 209 1 255 311 61 54 chr4 158561398 158561546 -25727116 + MIR SINE MIR 52 200 -62 1927 105 10 48 chr4 158562028 158562341 -25726321 + AluSx SINE Alu 1 301 -11 2383 92 0 0 chr4 158562774 158563080 -25725582 + AluSc SINE Alu 1 306 -3 5179 136 7 20 chr4 158565063 158566330 -25722332 - L1PA16 LINE L1 -3 6163 4870 1883 168 0 0 chr4 158570009 158570313 -25718349 + AluJb SINE Alu 1 304 -8 25 0 0 0 chr4 158571841 158571866 -25716796 + AT_rich Low_complexity Low_complexity 1 25 0 31 0 0 0 chr4 158573791 158573822 -25714840 + AT_rich Low_complexity Low_complexity 1 31 0 277 315 9 0 chr4 158574164 158574275 -25714387 - L1ME LINE L1 -460 5661 5550 270 219 235 67 chr4 158574920 158575039 -25713623 + MIR SINE MIR 16 154 -108 26 0 0 0 chr4 158575588 158575614 -25713048 + AT_rich Low_complexity Low_complexity 1 26 0 660 183 0 8 chr4 158575646 158575777 -25712885 - L1PA16 LINE L1 -4 6162 6033 21 0 0 0 chr4 158575820 158575841 -25712821 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 158576546 158576576 -25712086 + AT_rich Low_complexity Low_complexity 1 30 0 32 57 0 0 chr4 158576630 158576683 -25711979 + AT_rich Low_complexity Low_complexity 1 53 0 6093 52 0 6 chr4 158577373 158578209 -25710453 - L1PA5 LINE L1 -141 6013 5183 * 10705 49 0 0 chr4 158578208 158579549 -25709113 + L1PA5 LINE L1 3839 5179 -967 2318 103 6 3 chr4 158579696 158580007 -25708655 + AluSx SINE Alu 1 312 0 21 0 0 0 chr4 158581480 158581501 -25707161 + AT_rich Low_complexity Low_complexity 1 21 0 247 292 14 0 chr4 158581997 158582069 -25706593 + (TATATG)n Simple_repeat Simple_repeat 2 74 0 200 339 89 24 chr4 158582417 158582541 -25706121 - L2 LINE L2 -66 3247 3116 233 292 83 0 chr4 158582799 158582871 -25705791 - L2 LINE L2 -1 3271 3194 267 203 0 0 chr4 158582946 158583010 -25705652 + (TGGA)n Simple_repeat Simple_repeat 3 66 0 189 121 0 0 chr4 158583183 158583216 -25705446 + (TGGA)n Simple_repeat Simple_repeat 1 33 0 2302 132 3 8 chr4 158583297 158583692 -25704970 + THE1B LTR MaLR 1 373 -2 848 122 8 15 chr4 158583865 158583996 -25704666 + THE1B LTR MaLR 1 130 -234 27 62 0 0 chr4 158584573 158584621 -25704041 + AT_rich Low_complexity Low_complexity 1 48 0 2069 29 0 0 chr4 158586329 158586574 -25702088 + L1PA2 LINE L1 5907 6151 -4 22 56 0 0 chr4 158587005 158587041 -25701621 + AT_rich Low_complexity Low_complexity 1 36 0 457 226 44 93 chr4 158587480 158587684 -25700978 - L2 LINE L2 -22 3291 3098 426 283 19 0 chr4 158587699 158587805 -25700857 + 5S rRNA rRNA 3 110 -11 1761 114 0 8 chr4 158588400 158588645 -25700017 + AluSg1 SINE Alu 3 245 -64 22 35 0 0 chr4 158588796 158588825 -25699837 + AT_rich Low_complexity Low_complexity 1 29 0 494 152 11 0 chr4 158589436 158589528 -25699134 + GA-rich Low_complexity Low_complexity 3 95 0 203 200 0 0 chr4 158589529 158589564 -25699098 + A-rich Low_complexity Low_complexity 1 35 0 1099 147 18 19 chr4 158590276 158590749 -25697913 + L1MB2 LINE L1 5586 6167 -4 28 0 0 0 chr4 158590955 158590983 -25697679 + AT_rich Low_complexity Low_complexity 1 28 0 48 53 0 0 chr4 158591053 158591129 -25697533 + AT_rich Low_complexity Low_complexity 1 76 0 251 316 41 20 chr4 158591279 158591377 -25697285 - L2 LINE L2 0 3272 3173 195 179 179 0 chr4 158591518 158591574 -25697088 + MIR SINE MIR 36 101 -161 25 0 0 0 chr4 158591789 158591814 -25696848 + AT_rich Low_complexity Low_complexity 1 25 0 925 218 151 30 chr4 158592589 158592860 -25695802 + MER82 DNA MER2_type 2 305 -348 588 259 52 0 chr4 158592856 158592991 -25695671 + MER82 DNA MER2_type 490 631 -22 * 705 325 136 26 chr4 158593427 158594262 -25694400 - L2 LINE L2 -84 3229 2301 362 250 0 0 chr4 158594409 158594481 -25694181 - L2 LINE L2 0 3313 3242 2348 104 0 0 chr4 158597897 158598206 -25690456 + AluSc SINE Alu 1 309 0 426 344 156 0 chr4 158598736 158598890 -25689772 - MER5A DNA MER1_type 0 189 12 261 134 30 30 chr4 158601258 158601325 -25687337 + GA-rich Low_complexity Low_complexity 2 68 0 2172 103 3 7 chr4 158601692 158601992 -25686670 - AluSq SINE Alu -14 299 1 369 0 0 0 chr4 158602688 158602729 -25685933 + (CA)n Simple_repeat Simple_repeat 2 42 0 707 275 76 14 chr4 158603615 158603826 -25684836 + MER58A DNA MER1_type 1 224 0 243 162 0 0 chr4 158603922 158603959 -25684703 + MIR SINE MIR 31 67 -141 1147 219 48 80 chr4 158604391 158604766 -25683896 + MLT1A1 LTR MaLR 2 364 -1 477 161 9 36 chr4 158605848 158605960 -25682702 - L1MB3 LINE L1 -1 6182 6074 253 309 126 26 chr4 158606317 158606547 -25682115 - L1ME LINE L1 -495 5626 5374 311 354 93 37 chr4 158606850 158607311 -25681351 - L1ME LINE L1 -1168 4978 4492 23 54 0 0 chr4 158607334 158607371 -25681291 + AT_rich Low_complexity Low_complexity 1 37 0 436 252 138 19 chr4 158607493 158607652 -25681010 + MIR SINE MIR 82 259 -3 1981 158 3 0 chr4 158607851 158608155 -25680507 + AluSx SINE Alu 1 305 -7 22 0 0 0 chr4 158608170 158608192 -25680470 + AT_rich Low_complexity Low_complexity 1 22 0 4848 178 41 16 chr4 158608786 158610013 -25678649 + L1MB2 LINE L1 4901 6163 -8 428 341 62 19 chr4 158610688 158611011 -25677651 + L1MB2 LINE L1 2285 2621 -3525 375 269 62 41 chr4 158611103 158611471 -25677191 + L1MB2 LINE L1 2763 3138 -3008 1998 148 6 3 chr4 158612231 158612562 -25676100 - L1PA16 LINE L1 -124 6042 5711 2120 130 0 0 chr4 158612806 158613114 -25675548 - AluSq SINE Alu -5 308 1 1862 125 10 20 chr4 158613117 158613413 -25675249 - AluSx SINE Alu -19 293 1 180 0 0 0 chr4 158613420 158613440 -25675222 + (TTG)n Simple_repeat Simple_repeat 2 21 0 636 271 23 46 chr4 158613538 158613885 -25674777 - L1ME LINE L1 -3044 3102 2764 2954 148 6 8 chr4 158614505 158615010 -25673652 + L1PA16 LINE L1 5658 6161 -5 310 293 20 0 chr4 158615066 158615165 -25673497 + L1MC4 LINE L1 6612 6712 -1330 21 0 0 0 chr4 158616407 158616428 -25672234 + AT_rich Low_complexity Low_complexity 1 21 0 361 197 13 0 chr4 158616649 158616725 -25671937 + MER103 DNA DNA 3 79 -87 37 39 0 0 chr4 158618405 158618456 -25670206 + AT_rich Low_complexity Low_complexity 1 51 0 767 336 47 14 chr4 158618572 158618932 -25669730 - L2 LINE L2 -51 3262 2891 249 250 15 29 chr4 158618936 158619004 -25669658 - L2 LINE L2 -534 2780 2714 2400 204 35 23 chr4 158620015 158622132 -25666530 + L1MB2 LINE L1 3856 6171 0 27 81 0 0 chr4 158623370 158623432 -25665230 + AT_rich Low_complexity Low_complexity 1 62 0 376 282 0 0 chr4 158626113 158626216 -25662446 + L2 LINE L2 1980 2082 -1232 25 31 0 0 chr4 158627765 158627797 -25660865 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr4 158627910 158627933 -25660729 + AT_rich Low_complexity Low_complexity 1 23 0 32 43 0 0 chr4 158633043 158633089 -25655573 + AT_rich Low_complexity Low_complexity 1 46 0 232 327 28 19 chr4 158633496 158633603 -25655059 + L1MC4 LINE L1 7779 7886 -156 185 0 40 0 chr4 158633631 158633656 -25655006 + (CA)n Simple_repeat Simple_repeat 1 26 0 1481 167 6 79 chr4 158634769 158635086 -25653576 - AluJb SINE Alu -16 296 3 372 256 214 8 chr4 158636280 158636397 -25652265 - MER5A DNA MER1_type 0 189 49 200 292 125 14 chr4 158642557 158642629 -25646033 - L2 LINE L2 -19 3294 3215 876 193 6 12 chr4 158643627 158643788 -25644874 - AluJo SINE Alu -30 282 123 25 0 0 0 chr4 158643964 158643989 -25644673 + AT_rich Low_complexity Low_complexity 1 25 0 293 256 92 16 chr4 158644083 158644295 -25644367 - L1ME LINE L1 -355 5809 5573 664 234 85 88 chr4 158645051 158645514 -25643148 + L1MC5 LINE L1 6562 6987 -821 1903 140 29 62 chr4 158645895 158646280 -25642382 - THE1C LTR MaLR -2 373 2 288 282 154 35 chr4 158646281 158646390 -25642272 - L1ME LINE L1 -1092 5054 4959 1370 136 41 0 chr4 158646390 158646611 -25642051 + MER30 DNA MER1_type 1 230 0 288 282 154 35 chr4 158646611 158646955 -25641707 - L1ME LINE L1 -1187 4959 4547 306 321 24 61 chr4 158647295 158647358 -25641304 - L1ME LINE L1 -2010 4136 4072 2164 126 10 0 chr4 158647358 158647659 -25641003 - AluSx SINE Alu -6 306 3 306 321 24 61 chr4 158647659 158647760 -25640902 - L1ME LINE L1 -2074 4072 3978 376 361 17 0 chr4 158647772 158648010 -25640652 - L1ME LINE L1 -2410 3736 3495 1165 306 54 5 chr4 158648150 158648559 -25640103 + LTR16A LTR ERVL 22 450 0 873 309 84 38 chr4 158648559 158648977 -25639685 + HERV16 LTR ERVL 1 398 -4598 2784 13 0 0 chr4 158648977 158649283 -25639379 + AluYa5 SINE Alu 1 306 -5 873 309 84 38 chr4 158649283 158649451 -25639211 + HERV16 LTR ERVL 398 557 -4439 2124 148 0 3 chr4 158649451 158649756 -25638906 + AluSx SINE Alu 1 304 -8 873 309 84 38 chr4 158649756 158650003 -25638659 + HERV16 LTR ERVL 557 926 -4070 1004 130 10 68 chr4 158650162 158650354 -25638308 + MLT2A2 LTR ERVL 273 453 0 1018 330 94 21 chr4 158650415 158651405 -25637257 + HERV16 LTR ERVL 1143 2271 -2725 1061 231 41 29 chr4 158651415 158651731 -25636931 + L1MCc LINE L1 18 337 -6086 395 343 54 20 chr4 158651749 158652046 -25636616 + ERVL LTR ERVL 4828 5134 -630 25 51 0 0 chr4 158652287 158652326 -25636336 + AT_rich Low_complexity Low_complexity 1 39 0 405 333 83 9 chr4 158652350 158652578 -25636084 - HERV16 LTR ERVL -2725 2271 2027 29 28 0 0 chr4 158652727 158652763 -25635899 + AT_rich Low_complexity Low_complexity 1 36 0 21 71 0 0 chr4 158653588 158653630 -25635032 + AT_rich Low_complexity Low_complexity 1 42 0 220 254 289 9 chr4 158655338 158655452 -25633210 - MIR SINE MIR -72 190 45 5613 142 48 30 chr4 158655852 158656903 -25631759 + MER11C LTR ERVK 1 1071 0 223 354 111 14 chr4 158656921 158657081 -25631581 + MER5A DNA MER1_type 7 171 -7 2329 104 0 0 chr4 158657217 158657516 -25631146 - AluSg1 SINE Alu -8 301 3 28 29 0 0 chr4 158658357 158658392 -25630270 + AT_rich Low_complexity Low_complexity 1 35 0 1215 215 3 50 chr4 158658427 158658776 -25629886 - AluJo SINE Alu 0 335 1 214 282 159 55 chr4 158658800 158658963 -25629699 - MIR SINE MIR -74 188 9 360 242 178 51 chr4 158659122 158659279 -25629383 - MIR SINE MIR -76 186 10 9558 229 61 26 chr4 158660072 158660336 -25628326 - L1PA16 LINE L1 -2 6815 6562 1750 126 4 0 chr4 158660336 158660583 -25628079 - AluSx SINE Alu -4 308 61 9558 229 61 26 chr4 158660583 158663686 -25624976 - L1PA16 LINE L1 -255 6562 3571 8357 27 2 2 chr4 158663686 158665446 -25623216 + L1PA3 LINE L1 4395 6155 0 1047 161 0 10 chr4 158665452 158665644 -25623018 + L1PB1 LINE L1 5959 6148 -3 9558 229 61 26 chr4 158665644 158666268 -25622394 - L1PA16 LINE L1 -3250 3567 2667 4660 51 15 50 chr4 158666268 158667333 -25621329 + MER11A LTR ERVK 1 1266 0 3561 224 48 38 chr4 158667335 158668505 -25620157 - L1PA16 LINE L1 -4127 2670 1509 201 39 0 0 chr4 158669501 158669527 -25619135 + (TA)n Simple_repeat Simple_repeat 2 27 0 22 35 0 0 chr4 158670328 158670357 -25618305 + AT_rich Low_complexity Low_complexity 1 29 0 3277 241 55 28 chr4 158671870 158673275 -25615387 - L1MDa LINE L1 -2617 3923 2481 1756 167 75 29 chr4 158673292 158673640 -25615022 + THE1B LTR MaLR 1 364 0 1761 262 55 40 chr4 158673642 158674265 -25614397 - MLT1E2 LTR MaLR 0 626 1 969 243 22 113 chr4 158674265 158674347 -25614315 - MLT1E2-int LTR MaLR 0 1371 1283 2160 147 120 0 chr4 158674347 158674729 -25613933 + MSTC LTR MaLR 1 428 0 969 243 22 113 chr4 158674729 158675098 -25613564 - MLT1E2-int LTR MaLR -88 1283 961 569 271 66 6 chr4 158675224 158675405 -25613257 - MLT1E2-int LTR MaLR -484 887 696 608 189 21 121 chr4 158675556 158675746 -25612916 - MLT1E2-int LTR MaLR -726 645 475 965 222 59 90 chr4 158675746 158676140 -25612522 + MLT1B LTR MaLR 1 504 -1 809 226 60 2 chr4 158676142 158676460 -25612202 - MLT1E2-int LTR MaLR -905 466 15 1651 178 10 24 chr4 158676519 158676812 -25611850 + AluJb SINE Alu 4 292 -20 1604 220 100 52 chr4 158676818 158677400 -25611262 - MLT1E2 LTR MaLR -35 590 1 255 300 91 9 chr4 158677660 158677770 -25610892 + L2 LINE L2 1784 1902 -1412 827 339 161 11 chr4 158677810 158678619 -25610043 + L2 LINE L2 2029 2982 -290 234 324 56 28 chr4 158678638 158678746 -25609916 - L2 LINE L2 -24 3289 3179 22 0 0 0 chr4 158679510 158679532 -25609130 + AT_rich Low_complexity Low_complexity 1 22 0 328 267 76 8 chr4 158680192 158680323 -25608339 - MIR SINE MIR -49 213 74 203 242 16 16 chr4 158680326 158680388 -25608274 + (TA)n Simple_repeat Simple_repeat 2 63 0 320 341 29 92 chr4 158680485 158680799 -25607863 - L2 LINE L2 -115 3157 2864 317 177 168 35 chr4 158680877 158680990 -25607672 + MIR SINE MIR 91 218 -44 193 343 0 0 chr4 158681039 158681106 -25607556 - MIR SINE MIR -150 112 46 699 300 142 51 chr4 158683264 158684183 -25604479 + HAL1 LINE L1 163 1164 -1343 418 223 187 18 chr4 158684190 158684356 -25604306 + L1ME1 LINE L1 5936 6129 -37 859 275 48 25 chr4 158684379 158684776 -25603886 + HAL1 LINE L1 1164 1569 -938 36 70 0 0 chr4 158684948 158685019 -25603643 + AT_rich Low_complexity Low_complexity 1 71 0 361 297 81 62 chr4 158685151 158685471 -25603191 + HAL1b LINE L1 478 803 -545 664 220 159 4 chr4 158685770 158686002 -25602660 + L1MDa LINE L1 2011 2278 -4262 838 126 0 0 chr4 158686015 158686142 -25602520 - AluSg/x SINE Alu -13 297 171 281 331 180 12 chr4 158686270 158686442 -25602220 + MIR SINE MIR 20 220 -42 2224 87 0 51 chr4 158687180 158687491 -25601171 + AluSq SINE Alu 1 295 -18 2359 80 3 7 chr4 158689757 158690058 -25598604 - AluY SINE Alu -11 300 1 283 311 118 8 chr4 158690423 158690542 -25598120 + MIR SINE MIR 131 262 0 580 197 0 43 chr4 158690859 158690976 -25597686 - MER58B DNA MER1_type 0 341 230 1920 102 0 8 chr4 158691942 158692198 -25596464 - AluSc SINE Alu -15 294 41 557 326 78 56 chr4 158692931 158693290 -25595372 + L2 LINE L2 2904 3270 -2 198 307 171 0 chr4 158693319 158693407 -25595255 - MIR3 SINE MIR -27 181 79 215 125 25 0 chr4 158693547 158693587 -25595075 + GA-rich Low_complexity Low_complexity 5 45 0 1122 192 5 14 chr4 158693635 158693849 -25594813 - MER20 DNA MER1_type -7 212 1 15111 133 17 5 chr4 158695371 158697759 -25590903 - Tigger1 DNA MER2_type 0 2418 3 2429 73 0 22 chr4 158697759 158698072 -25590590 + AluY SINE Alu 1 306 -5 233 243 78 39 chr4 158700220 158700323 -25588339 - MIR SINE MIR 0 262 156 23 110 0 0 chr4 158701915 158702015 -25586647 + AT_rich Low_complexity Low_complexity 1 100 0 1978 153 3 6 chr4 158702040 158702353 -25586309 - AluJb SINE Alu 0 312 1 562 299 7 19 chr4 158702916 158703070 -25585592 - MER5B DNA MER1_type -24 154 3 23 33 0 0 chr4 158703853 158703883 -25584779 + AT_rich Low_complexity Low_complexity 1 30 0 519 247 6 38 chr4 158703978 158704136 -25584526 - MIR SINE MIR -89 173 21 234 250 0 19 chr4 158704723 158704775 -25583887 + MIR3 SINE MIR 110 160 -48 243 297 18 73 chr4 158704797 158705016 -25583646 - L1MC4 LINE L1 -4 8038 7832 273 212 188 0 chr4 158705047 158705132 -25583530 - L1ME2 LINE L1 -21 6143 6043 271 317 10 19 chr4 158705806 158705910 -25582752 + MIR3 SINE MIR 62 164 -44 1352 264 102 23 chr4 158706482 158706921 -25581741 + LTR40a LTR ERVL 1 474 -45 1592 185 7 32 chr4 158707413 158707721 -25580941 - AluJb SINE Alu -12 300 1 201 368 32 24 chr4 158708856 158708981 -25579681 - MER5A DNA MER1_type -35 154 29 * 227 358 25 17 chr4 158708874 158708994 -25579668 + MER5A DNA MER1_type 64 184 -5 2175 63 0 0 chr4 158709308 158709585 -25579077 + AluY SINE Alu 31 307 0 1217 99 6 6 chr4 158709966 158710147 -25578515 + L1MA4A LINE L1 5709 5889 -414 186 43 0 0 chr4 158710332 158710355 -25578307 + (CAA)n Simple_repeat Simple_repeat 2 24 0 339 182 83 45 chr4 158710438 158710570 -25578092 + L1ME4a LINE L1 5782 5918 -203 330 278 145 72 chr4 158710676 158711007 -25577655 + MLT1I LTR MaLR 38 392 -17 24 0 0 0 chr4 158711054 158711078 -25577584 + AT_rich Low_complexity Low_complexity 1 24 0 558 106 0 0 chr4 158712179 158712273 -25576389 + L1MA4A LINE L1 6210 6303 0 346 287 11 0 chr4 158712299 158712386 -25576276 + MIR SINE MIR 63 150 -112 244 364 34 0 chr4 158712605 158712693 -25575969 - MIR3 SINE MIR -4 204 114 242 302 0 0 chr4 158713022 158713075 -25575587 - MIR SINE MIR -133 75 23 232 229 40 40 chr4 158713298 158713388 -25575274 + MIR SINE MIR 106 191 -61 1729 265 97 5 chr4 158713604 158713956 -25574706 + L2 LINE L2 2073 2496 -818 2135 99 35 0 chr4 158713956 158714240 -25574422 - AluSx SINE Alu -6 306 13 1729 265 97 5 chr4 158714240 158714446 -25574216 + L2 LINE L2 2496 2682 -632 1823 146 37 14 chr4 158714565 158714859 -25573803 - AluJb SINE Alu -11 301 1 367 348 72 7 chr4 158714902 158715040 -25573622 + MIR SINE MIR 32 178 -84 2101 114 3 0 chr4 158715142 158715431 -25573231 + AluSq SINE Alu 9 298 -15 655 312 61 4 chr4 158716472 158716719 -25571943 + MIR SINE MIR 2 262 0 663 198 84 101 chr4 158716734 158716961 -25571701 - MER58A DNA MER1_type -1 223 1 1393 216 36 107 chr4 158717647 158718273 -25570389 - L1ME LINE L1 -390 6012 5428 362 127 0 0 chr4 158719033 158719088 -25569574 - L1ME LINE L1 -1201 5181 5127 30415 109 16 76 chr4 158719102 158725117 -25563545 + L1PA7 LINE L1 13 5581 -573 2239 114 0 3 chr4 158725117 158725424 -25563238 + AluY SINE Alu 1 306 -5 30415 109 16 76 chr4 158725424 158725966 -25562696 + L1PA7 LINE L1 5581 6154 0 2064 270 21 44 chr4 158725962 158726758 -25561904 - L1ME LINE L1 -1242 5140 4363 * 30 45 0 0 chr4 158726922 158726966 -25561696 + AT_rich Low_complexity Low_complexity 1 44 0 353 22 22 0 chr4 158727011 158727057 -25561605 + (CA)n Simple_repeat Simple_repeat 1 47 0 737 232 26 5 chr4 158727061 158727255 -25561407 + L1M4 LINE L1 3920 4117 -2029 917 313 13 40 chr4 158727315 158727791 -25560871 - L1ME LINE L1 -4645 1739 1277 2320 248 51 47 chr4 158727923 158728694 -25559968 - L1ME LINE L1 -5586 977 204 2361 119 24 14 chr4 158729613 158729984 -25558678 + THE1C LTR MaLR 1 375 0 9555 123 19 55 chr4 158729984 158731623 -25557039 + THE1C-int LTR MaLR 1 1580 0 2701 94 11 11 chr4 158731623 158731996 -25556666 + THE1C LTR MaLR 1 373 -2 473 324 82 75 chr4 158732751 158733326 -25555336 + L1MEd LINE L1 3 581 -5538 332 326 29 0 chr4 158733435 158733607 -25555055 + L1M4 LINE L1 3739 3915 -2231 852 286 91 16 chr4 158733660 158734279 -25554383 + L1M4 LINE L1 4041 4705 -1441 198 71 0 0 chr4 158734457 158734485 -25554177 + (TTTTC)n Simple_repeat Simple_repeat 4 31 0 180 282 0 0 chr4 158734991 158735030 -25553632 + L2 LINE L2 3006 3044 -228 1022 215 154 0 chr4 158735067 158735365 -25553297 - MER2 DNA MER2_type 0 344 1 187 310 70 31 chr4 158735596 158735725 -25552937 - MIR SINE MIR -109 153 20 190 346 181 0 chr4 158736613 158736746 -25551916 - MIR3 SINE MIR -21 187 31 33 25 0 0 chr4 158737021 158737061 -25551601 + AT_rich Low_complexity Low_complexity 1 40 0 2149 123 0 0 chr4 158737061 158737346 -25551316 - AluSx SINE Alu -27 285 1 22 0 0 0 chr4 158737516 158737538 -25551124 + AT_rich Low_complexity Low_complexity 1 22 0 548 305 84 34 chr4 158738292 158738521 -25550141 - MIR SINE MIR -21 241 3 1972 77 8 0 chr4 158739024 158739271 -25549391 + AluSp SINE Alu 43 291 -22 251 329 80 22 chr4 158742675 158742812 -25545850 - MIR SINE MIR -30 232 88 328 323 25 6 chr4 158743502 158743660 -25545002 + CT-rich Low_complexity Low_complexity 1 161 0 189 0 0 0 chr4 158745140 158745161 -25543501 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 231 305 195 8 chr4 158745401 158745529 -25543133 + MIR SINE MIR 111 262 0 1978 112 44 14 chr4 158746471 158746766 -25541896 + AluSc SINE Alu 1 304 -5 1937 89 32 32 chr4 158747581 158747863 -25540799 + AluY SINE Alu 4 285 -26 25 31 0 0 chr4 158748239 158748271 -25540391 + AT_rich Low_complexity Low_complexity 1 32 0 1511 181 21 18 chr4 158749732 158750053 -25538609 + AluJo SINE Alu 1 322 0 849 60 0 17 chr4 158751201 158751317 -25537345 + L1PA5 LINE L1 6041 6154 0 204 333 93 0 chr4 158751868 158751943 -25536719 - MIR3 SINE MIR -11 197 116 375 305 67 0 chr4 158751971 158752076 -25536586 + L2 LINE L2 3202 3313 0 2289 104 0 0 chr4 158752249 158752546 -25536116 - AluSg1 SINE Alu -12 297 1 2027 147 53 6 chr4 158752624 158752984 -25535678 + L1PA15 LINE L1 5789 6165 0 267 332 81 43 chr4 158753004 158753215 -25535447 - L2 LINE L2 -189 3083 2865 1144 193 138 20 chr4 158753287 158753592 -25535070 - MER2 DNA MER2_type 0 345 5 232 305 12 0 chr4 158757879 158757961 -25530701 + L1MEd LINE L1 2 84 -6035 1721 145 35 53 chr4 158759017 158759335 -25529327 + AluJb SINE Alu 1 312 0 281 190 0 40 chr4 158760464 158760564 -25528098 + GA-rich Low_complexity Low_complexity 3 98 0 357 322 64 0 chr4 158761493 158761649 -25527013 + MIR SINE MIR 4 180 -60 183 156 0 0 chr4 158764030 158764062 -25524600 + GA-rich Low_complexity Low_complexity 1 32 0 23 54 0 0 chr4 158764701 158764738 -25523924 + GC_rich Low_complexity Low_complexity 1 37 0 387 0 0 0 chr4 158766117 158766160 -25522502 + (CA)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr4 158767042 158767063 -25521599 + AT_rich Low_complexity Low_complexity 1 21 0 228 268 36 0 chr4 158767922 158767978 -25520684 - MER113 DNA MER1_type? 0 521 464 529 307 32 37 chr4 158768654 158768872 -25519790 + MIR SINE MIR 20 236 -26 464 304 106 31 chr4 158769044 158769295 -25519367 + MIR SINE MIR 1 262 0 324 0 0 0 chr4 158769370 158769406 -25519256 + (CA)n Simple_repeat Simple_repeat 1 36 0 21 36 0 0 chr4 158769660 158769688 -25518974 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr4 158770508 158770529 -25518133 + (TAAAA)n Simple_repeat Simple_repeat 1 21 0 222 37 0 0 chr4 158771667 158771694 -25516968 + (A)n Simple_repeat Simple_repeat 1 27 0 275 0 0 28 chr4 158772768 158772804 -25515858 + (TTAAA)n Simple_repeat Simple_repeat 1 35 0 2239 85 3 0 chr4 158774767 158775050 -25513612 + AluSp SINE Alu 26 309 -4 206 103 69 17 chr4 158775659 158775717 -25512945 + (TA)n Simple_repeat Simple_repeat 1 61 0 240 153 31 41 chr4 158776115 158776213 -25512449 + CT-rich Low_complexity Low_complexity 2 98 0 185 250 53 79 chr4 158776674 158776750 -25511912 - MER5A DNA MER1_type -64 125 52 237 292 107 12 chr4 158778256 158778424 -25510238 - LTR67 LTR ERVL -1 556 373 1276 161 20 98 chr4 158778653 158779000 -25509662 + MER33 DNA MER1_type 5 324 0 1855 72 16 100 chr4 158779180 158779500 -25509162 - AluSg SINE Alu -17 293 1 24 35 0 53 chr4 158779593 158779650 -25509012 + AT_rich Low_complexity Low_complexity 1 54 0 27 29 0 0 chr4 158779714 158779748 -25508914 + AT_rich Low_complexity Low_complexity 1 34 0 248 109 0 22 chr4 158779956 158780002 -25508660 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 874 148 35 0 chr4 158780396 158780575 -25508087 - AluSq SINE Alu 0 323 140 2258 84 0 0 chr4 158781101 158781387 -25507275 + AluSx SINE Alu 1 286 -26 34 0 0 0 chr4 158781402 158781436 -25507226 + AT_rich Low_complexity Low_complexity 1 34 0 278 67 22 0 chr4 158781442 158781487 -25507175 + (TA)n Simple_repeat Simple_repeat 1 46 0 1871 142 46 19 chr4 158781487 158781812 -25506850 + MER1B DNA MER1_type 4 337 0 24 0 0 0 chr4 158781961 158781985 -25506677 + AT_rich Low_complexity Low_complexity 1 24 0 309 258 133 13 chr4 158782025 158782176 -25506486 - L1 LINE L1 -1608 4538 4370 2128 112 0 45 chr4 158783618 158783931 -25504731 - AluSg SINE Alu -11 299 1 388 323 0 24 chr4 158784864 158784991 -25503671 - MIR3 SINE MIR -9 199 76 274 196 76 22 chr4 158785835 158785927 -25502735 - MER94 DNA DNA 0 134 38 299 24 0 24 chr4 158786876 158786917 -25501745 + (TG)n Simple_repeat Simple_repeat 1 40 0 26 30 0 0 chr4 158787860 158787893 -25500769 + AT_rich Low_complexity Low_complexity 1 33 0 2335 115 120 5 chr4 158787981 158788365 -25500297 + MSTA LTR MaLR 1 428 0 215 229 73 0 chr4 158788773 158788869 -25499793 + (TATATG)n Simple_repeat Simple_repeat 6 108 0 1515 188 4 18 chr4 158788986 158789262 -25499400 + AluJo SINE Alu 18 289 -23 1632 139 74 45 chr4 158789829 158790181 -25498481 - L1MA4 LINE L1 -5 6295 5934 2103 107 7 0 chr4 158791088 158791378 -25497284 - AluSp SINE Alu -19 294 3 21 82 0 0 chr4 158792373 158792422 -25496240 + AT_rich Low_complexity Low_complexity 1 49 0 884 110 0 0 chr4 158792655 158792782 -25495880 - AluSg/x SINE Alu -9 301 175 340 322 26 33 chr4 158793418 158793570 -25495092 - MIR SINE MIR -34 228 78 372 103 0 0 chr4 158793872 158793930 -25494732 + (TG)n Simple_repeat Simple_repeat 2 59 0 30 59 0 0 chr4 158794209 158794260 -25494402 + AT_rich Low_complexity Low_complexity 1 51 0 2127 117 50 34 chr4 158795487 158795845 -25492817 - THE1B LTR MaLR 0 364 1 240 114 0 23 chr4 158796359 158796403 -25492259 - L1P LINE L1 -801 5367 5325 1015 165 0 31 chr4 158796409 158796603 -25492059 - AluSx SINE Alu 0 310 123 41574 61 3 1 chr4 158796610 158802737 -25485925 - L1PA5 LINE L1 -4 6150 11 1016 129 0 7 chr4 158802741 158802888 -25485774 - AluSx SINE Alu -166 146 1 736 111 0 0 chr4 158802923 158803031 -25485631 - L1PB1 LINE L1 -22 6129 6022 * 1130 137 11 0 chr4 158803027 158803202 -25485460 + L1P3 LINE L1 5424 5600 -554 303 161 0 0 chr4 158803290 158803346 -25485316 + (TG)n Simple_repeat Simple_repeat 2 57 0 259 298 19 0 chr4 158803393 158803497 -25485165 + L1M4 LINE L1 2722 2827 -3319 322 270 79 53 chr4 158803636 158803977 -25484685 + L1M4 LINE L1 2876 3225 -2921 3809 126 7 8 chr4 158804352 158804858 -25483804 - L1PA11 LINE L1 -342 5832 5325 882 163 12 0 chr4 158804858 158805018 -25483644 - L1PB1 LINE L1 -1 6150 5989 3809 126 7 8 chr4 158805018 158805467 -25483195 - L1PA11 LINE L1 -849 5325 4877 404 89 65 58 chr4 158805501 158805560 -25483102 - L1P1 LINE L1 -419 5735 5676 1047 102 0 0 chr4 158805560 158805706 -25482956 + L1PA7 LINE L1 5993 6139 -15 404 89 65 58 chr4 158805706 158805740 -25482922 - L1P1 LINE L1 -478 5676 5644 236 328 76 38 chr4 158807044 158807175 -25481487 + MIR SINE MIR 18 153 -109 895 204 71 0 chr4 158807418 158807614 -25481048 + MER58A DNA MER1_type 11 220 -4 294 237 65 21 chr4 158808863 158808956 -25479706 + MIR SINE MIR 47 143 -65 2235 102 3 0 chr4 158809489 158809783 -25478879 + AluSx SINE Alu 1 295 -17 240 35 0 0 chr4 158810773 158810802 -25477860 + (TG)n Simple_repeat Simple_repeat 2 30 0 186 43 0 0 chr4 158811480 158811503 -25477159 + (TAA)n Simple_repeat Simple_repeat 2 24 0 201 74 0 0 chr4 158811536 158811563 -25477099 + (TG)n Simple_repeat Simple_repeat 1 27 0 21 36 0 0 chr4 158811891 158811919 -25476743 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 158811996 158812017 -25476645 + AT_rich Low_complexity Low_complexity 1 21 0 200 33 0 33 chr4 158812065 158812095 -25476567 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2394 132 71 24 chr4 158812446 158812806 -25475856 + MSTA LTR MaLR 1 384 -44 2718 76 3 0 chr4 158812806 158813160 -25475502 - THE1A LTR MaLR 0 355 1 2394 132 71 24 chr4 158813160 158813208 -25475454 + MSTA LTR MaLR 384 428 0 896 241 102 15 chr4 158813776 158814100 -25474562 - LTR37A LTR ERV1 0 426 75 602 273 166 17 chr4 158814632 158814987 -25473675 - L1ME LINE L1 -356 5765 5358 1203 253 58 41 chr4 158815017 158815524 -25473138 - MER39 LTR ERV1 0 707 4 23 33 0 0 chr4 158815748 158815778 -25472884 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 158816341 158816362 -25472300 + AT_rich Low_complexity Low_complexity 1 21 0 209 294 29 0 chr4 158816424 158816492 -25472170 + MIR SINE MIR 190 259 -3 26 0 0 0 chr4 158817338 158817364 -25471298 + AT_rich Low_complexity Low_complexity 1 26 0 25 65 0 0 chr4 158817481 158817527 -25471135 + AT_rich Low_complexity Low_complexity 1 46 0 465 208 38 69 chr4 158817690 158817849 -25470813 + MER103 DNA DNA 13 166 0 336 213 73 12 chr4 158820096 158820260 -25468402 + (TA)n Simple_repeat Simple_repeat 2 175 0 22 35 0 0 chr4 158820317 158820346 -25468316 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4 158820687 158820710 -25467952 + AT_rich Low_complexity Low_complexity 1 23 0 3205 113 156 133 chr4 158821698 158823108 -25465554 + pTR5 LTR ERV1 741 2605 -1 1132 222 57 8 chr4 158823126 158823438 -25465224 - MER33 DNA MER1_type -1 323 1 2034 277 110 36 chr4 158823444 158824356 -25464306 + L2 LINE L2 1713 2691 -623 852 304 61 34 chr4 158824877 158825699 -25462963 + L1ME3A LINE L1 2211 3054 -3092 664 292 101 69 chr4 158825756 158827686 -25460976 + L1ME3A LINE L1 3132 5137 -1009 14794 132 8 35 chr4 158827686 158830167 -25458495 + Tigger1 DNA MER2_type 2 2417 -1 664 292 101 69 chr4 158830167 158830343 -25458319 + L1ME3A LINE L1 5137 5306 -840 900 260 61 14 chr4 158830474 158830770 -25457892 + L1ME3A LINE L1 5528 5837 -333 969 108 7 7 chr4 158831048 158831187 -25457475 + AluJo SINE Alu 5 143 -169 248 319 248 13 chr4 158831533 158831690 -25456972 + MIR SINE MIR 17 210 -52 436 318 208 5 chr4 158834332 158834524 -25454138 - MIR SINE MIR 0 262 32 1182 227 39 86 chr4 158834717 158834816 -25453846 + MLT1B LTR MaLR 1 103 -287 526 209 91 9 chr4 158834816 158834926 -25453736 - FLAM_A SINE Alu -13 120 2 1182 227 39 86 chr4 158834926 158835235 -25453427 + MLT1B LTR MaLR 103 390 0 342 0 0 0 chr4 158836883 158836921 -25451741 + (T)n Simple_repeat Simple_repeat 1 38 0 185 219 49 0 chr4 158837268 158837309 -25451353 + MIR SINE MIR 220 262 0 422 339 73 6 chr4 158838055 158838232 -25450430 + L3b LINE CR1 1301 1489 -94 922 151 88 34 chr4 158838371 158838576 -25450086 + L1MA5A LINE L1 6078 6293 -4 748 272 74 69 chr4 158838582 158838684 -25449978 + L1MEd LINE L1 721 821 -5489 1494 204 88 55 chr4 158838684 158839173 -25449489 - MLT1D LTR MaLR 0 505 1 748 272 74 69 chr4 158839173 158840015 -25448647 + L1MEd LINE L1 821 1718 -4592 449 179 54 175 chr4 158840428 158840634 -25448028 - MLT1F LTR MaLR -9 533 379 * 785 243 137 4 chr4 158840617 158840843 -25447819 - MLT1F LTR MaLR -286 256 1 307 320 21 27 chr4 158840845 158841173 -25447489 + L1MEd LINE L1 2276 2601 -3528 454 282 164 0 chr4 158841585 158841834 -25446828 - L1MB5 LINE L1 -274 5900 5616 1653 94 140 0 chr4 158841849 158842114 -25446548 - AluSx SINE Alu 0 302 1 1527 299 91 43 chr4 158842164 158844218 -25444444 - L1MB5 LINE L1 -643 5519 3377 24 53 0 0 chr4 158844234 158844272 -25444390 + AT_rich Low_complexity Low_complexity 1 38 0 303 279 88 27 chr4 158844396 158844543 -25444119 - L1MB5 LINE L1 -3015 3131 2976 353 171 0 24 chr4 158844643 158844725 -25443937 - L1MA5A LINE L1 -307 5990 5911 672 48 0 0 chr4 158845457 158845541 -25443121 + (TTTC)n Simple_repeat Simple_repeat 3 86 0 1920 94 66 0 chr4 158845541 158845797 -25442865 - AluSx SINE Alu -32 280 8 728 281 136 20 chr4 158846284 158846835 -25441827 - MLT1L LTR MaLR 0 615 1 400 263 82 21 chr4 158847198 158847392 -25441270 + L1ME3A LINE L1 5317 5522 -648 1602 106 140 0 chr4 158847439 158847704 -25440958 + AluSx SINE Alu 1 302 0 448 286 164 0 chr4 158847719 158847968 -25440694 + L1ME3A LINE L1 5616 5900 -274 1669 184 7 26 chr4 158848240 158848549 -25440113 + AluJo SINE Alu 1 303 -9 25 0 0 0 chr4 158848804 158848829 -25439833 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr4 158848908 158848939 -25439723 + AT_rich Low_complexity Low_complexity 1 31 0 990 132 64 112 chr4 158849363 158849422 -25439240 - L1MA9 LINE L1 0 6312 6252 2112 129 0 0 chr4 158849422 158849709 -25438953 + AluSx SINE Alu 1 287 -25 990 132 64 112 chr4 158849709 158849944 -25438718 - L1MA9 LINE L1 -60 6252 6032 418 333 0 8 chr4 158851939 158852065 -25436597 - L2 LINE L2 0 3313 3189 23 33 0 0 chr4 158853857 158853887 -25434775 + AT_rich Low_complexity Low_complexity 1 30 0 1257 178 44 38 chr4 158855049 158855185 -25433477 - MER33 DNA MER1_type -2263 322 188 2358 73 0 29 chr4 158855185 158855498 -25433164 + AluY SINE Alu 1 304 -7 1257 178 44 38 chr4 158855498 158855681 -25432981 - MER33 DNA MER1_type -2397 188 1 449 311 120 23 chr4 158856020 158856319 -25432343 - L2 LINE L2 -4 3309 2982 631 236 115 59 chr4 158856658 158856700 -25431962 + L1ME LINE L1 5258 5296 -825 2140 119 0 0 chr4 158856700 158856994 -25431668 - AluSc SINE Alu -1 308 15 631 236 115 59 chr4 158856994 158857434 -25431228 + L1ME LINE L1 5296 5783 -338 904 257 36 32 chr4 158858266 158858515 -25430147 + MIR SINE MIR 13 262 0 307 328 30 66 chr4 158858605 158858704 -25429958 - MIR SINE MIR -13 249 159 2200 117 0 0 chr4 158858704 158859002 -25429660 + AluSx SINE Alu 1 298 -14 307 328 30 66 chr4 158859002 158859100 -25429562 - MIR SINE MIR -103 159 59 294 261 14 0 chr4 158859239 158859308 -25429354 - L2 LINE L2 -1 3312 3243 386 161 103 0 chr4 158859359 158859446 -25429216 + LTR50 LTR ERVL 1 96 -699 569 238 361 5 chr4 158859844 158860268 -25428394 + LTR50 LTR ERVL 98 672 -123 439 263 169 63 chr4 158861220 158861551 -25427111 + MLT1J LTR MaLR 2 367 -144 222 339 66 8 chr4 158863945 158864066 -25424596 - L2 LINE L2 -619 2695 2568 592 258 18 12 chr4 158864068 158864235 -25424427 - L2 LINE L2 0 3313 3146 1038 94 0 7 chr4 158864236 158864374 -25424288 + AluSq/x SINE Alu 1 137 -176 2150 123 0 0 chr4 158864379 158864672 -25423990 + AluSx SINE Alu 7 299 -13 216 0 0 0 chr4 158864672 158864696 -25423966 + (TA)n Simple_repeat Simple_repeat 1 24 0 722 285 108 4 chr4 158864702 158865099 -25423563 - L2 LINE L2 -133 3180 2749 439 249 261 6 chr4 158865099 158865264 -25423398 + LTR50 LTR ERVL 1 207 -588 344 258 62 51 chr4 158865415 158865593 -25423069 + LTR33A LTR ERVL 326 505 -18 548 311 117 61 chr4 158866196 158867048 -25421614 + ERVL LTR ERVL 850 1749 -4015 198 310 134 29 chr4 158867163 158867334 -25421328 + L2 LINE L2 2607 2795 -519 1237 276 66 6 chr4 158867420 158867768 -25420894 + MLT1H LTR MaLR 63 431 -118 274 189 318 45 chr4 158868049 158868181 -25420481 + LTR50 LTR ERVL 57 224 -571 425 265 171 23 chr4 158868248 158868517 -25420145 + LTR50 LTR ERVL 297 522 -1 332 213 372 32 chr4 158868517 158868705 -25419957 - L2 LINE L2 -560 2754 2503 377 264 136 14 chr4 158868710 158868850 -25419812 - L2 LINE L2 -1959 1355 1199 941 315 52 33 chr4 158868880 158869306 -25419356 - MLT1J1 LTR MaLR -7 439 6 1216 306 108 7 chr4 158869323 158869878 -25418784 - L2 LINE L2 -2147 1167 557 501 309 59 50 chr4 158869880 158870220 -25418442 - L2 LINE L2 -796 2518 2176 483 326 62 23 chr4 158870277 158870584 -25418078 - ERVL LTR ERVL -4595 1169 851 211 221 29 15 chr4 158870940 158871008 -25417654 - L2 LINE L2 -1268 2046 1978 664 288 41 33 chr4 158871024 158871267 -25417395 - MIR SINE MIR -15 247 3 428 332 136 60 chr4 158871314 158872196 -25416466 - L2 LINE L2 -1372 1942 994 819 98 5 0 chr4 158872322 158872457 -25416205 + L1P5 LINE L1 5684 5821 -330 198 368 13 13 chr4 158872754 158872830 -25415832 + L2 LINE L2 3123 3198 -74 211 326 136 18 chr4 158873765 158873980 -25414682 - MIR SINE MIR -23 239 3 1030 217 124 7 chr4 158874530 158874829 -25413833 + MER46C DNA MER2_type 1 334 -4 2143 233 81 11 chr4 158875192 158876007 -25412655 - L1ME2 LINE L1 -243 5921 5053 2465 64 0 6 chr4 158876886 158877197 -25411465 - AluY SINE Alu -2 309 1 242 304 44 52 chr4 158877441 158877576 -25411086 + MIR3 SINE MIR 62 195 -13 1866 122 7 7 chr4 158877686 158877957 -25410705 + AluSq SINE Alu 23 293 -20 30 0 0 0 chr4 158877959 158877989 -25410673 + AT_rich Low_complexity Low_complexity 1 30 0 205 256 0 0 chr4 158878318 158878357 -25410305 + polypurine Low_complexity Low_complexity 2 40 0 23 0 0 0 chr4 158879729 158879752 -25408910 + AT_rich Low_complexity Low_complexity 1 23 0 2398 71 3 0 chr4 158879854 158880149 -25408513 + AluY SINE Alu 1 296 -15 22 0 0 0 chr4 158880630 158880652 -25408010 + AT_rich Low_complexity Low_complexity 1 22 0 1079 201 89 3 chr4 158881463 158881902 -25406760 - MLT1D LTR MaLR 0 505 1 819 288 126 51 chr4 158883017 158883720 -25404942 - L2 LINE L2 0 3313 2540 2475 72 0 0 chr4 158883926 158884232 -25404430 - AluY SINE Alu -5 306 1 400 375 14 14 chr4 158884329 158884620 -25404042 - ERVL LTR ERVL -621 5143 4853 242 258 342 0 chr4 158885295 158885415 -25403247 - L3 LINE CR1 -327 1250 1090 275 335 12 41 chr4 158885435 158885605 -25403057 - L3 LINE CR1 -692 885 721 294 29 0 0 chr4 158886732 158886767 -25401895 + (TG)n Simple_repeat Simple_repeat 2 36 0 22 56 0 0 chr4 158887412 158887448 -25401214 + AT_rich Low_complexity Low_complexity 1 36 0 30 0 0 0 chr4 158887603 158887633 -25401029 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr4 158887827 158887852 -25400810 + AT_rich Low_complexity Low_complexity 1 25 0 596 309 7 0 chr4 158888764 158888913 -25399749 + MIR3 SINE MIR 35 184 -24 191 243 0 0 chr4 158888881 158888918 -25399744 + L3 LINE CR1 1526 1562 -15 * 4188 84 18 0 chr4 158888965 158889537 -25399125 - L1PA8 LINE L1 -4 6168 5587 2136 76 18 13 chr4 158889537 158889981 -25398681 + L1PA8 LINE L1 5124 5570 -602 319 227 15 0 chr4 158891907 158891973 -25396689 - L2 LINE L2 -1 3312 3246 2270 139 36 33 chr4 158892689 158893235 -25395427 + MLT2A2 LTR ERVL 3 554 0 1134 165 47 96 chr4 158893303 158893625 -25395037 + MER33 DNA MER1_type 17 322 -2 387 320 67 17 chr4 158898888 158899066 -25389596 - MER5A DNA MER1_type -2 187 1 237 237 0 0 chr4 158899137 158899196 -25389466 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 232 271 68 53 chr4 158899563 158899696 -25388966 + L2 LINE L2 1789 1923 -1391 2293 105 7 0 chr4 158900141 158900446 -25388216 + AluSc SINE Alu 3 309 0 813 292 69 0 chr4 158900504 158900737 -25387925 - MIR SINE MIR -7 255 7 289 265 82 116 chr4 158900936 158901332 -25387330 + HAL1 LINE L1 844 1219 -1288 1869 155 3 7 chr4 158901332 158901635 -25387027 + AluSx SINE Alu 2 303 -9 289 265 82 116 chr4 158901635 158901774 -25386888 + HAL1 LINE L1 1219 1361 -1146 24 32 0 0 chr4 158901853 158901884 -25386778 + AT_rich Low_complexity Low_complexity 1 31 0 481 299 125 19 chr4 158901901 158902373 -25386289 + L1M4 LINE L1 4531 5052 -1094 25 31 0 0 chr4 158902612 158902644 -25386018 + AT_rich Low_complexity Low_complexity 1 32 0 2189 94 3 26 chr4 158902677 158902984 -25385678 + AluSc SINE Alu 1 300 -9 1512 205 69 24 chr4 158904414 158904790 -25383872 - MSTD LTR MaLR -3 393 1 362 269 38 62 chr4 158905165 158905230 -25383432 - MER5A DNA MER1_type -16 167 102 2182 112 3 0 chr4 158905230 158905533 -25383129 - AluSp SINE Alu -9 304 1 362 269 38 62 chr4 158905533 158905627 -25383035 - MER5A DNA MER1_type -81 102 7 468 297 59 25 chr4 158905824 158906026 -25382636 - MER63A DNA MER1_type -1 209 1 1481 235 49 25 chr4 158906028 158906717 -25381945 - Charlie2 DNA MER1_type -117 2745 1988 319 308 87 23 chr4 158906754 158906926 -25381736 + MIR SINE MIR 16 198 -64 1522 177 97 6 chr4 158906935 158907246 -25381416 - L1MA8 LINE L1 -406 5894 5556 1434 180 19 86 chr4 158907235 158907652 -25381010 + L1MA8 LINE L1 5898 6286 -5 * 22 0 0 0 chr4 158907661 158907683 -25380979 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr4 158907723 158907747 -25380915 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr4 158907831 158907854 -25380808 + (A)n Simple_repeat Simple_repeat 1 23 0 26 30 0 0 chr4 158908971 158909004 -25379658 + AT_rich Low_complexity Low_complexity 1 33 0 211 264 0 0 chr4 158909483 158909536 -25379126 - MIR3 SINE MIR -7 201 149 201 351 43 21 chr4 158911222 158911316 -25377346 - L3 LINE CR1 -3 1574 1479 2242 150 42 46 chr4 158911437 158911657 -25377005 - Tigger2a DNA MER2_type -2274 434 215 1581 97 90 45 chr4 158911657 158911945 -25376717 + L1PA13 LINE L1 5858 6158 -5 2242 150 42 46 chr4 158911945 158912158 -25376504 - Tigger2a DNA MER2_type -2493 215 3 792 315 178 24 chr4 158912166 158912620 -25376042 - L3 LINE CR1 -195 1382 859 2377 94 0 3 chr4 158913104 158913413 -25375249 - AluSg SINE Alu -2 308 1 1081 205 0 0 chr4 158915344 158915549 -25373113 - MER3 DNA MER1_type -2 207 3 1840 99 0 143 chr4 158915873 158916236 -25372426 + AluSx SINE Alu 1 311 -1 2034 140 14 17 chr4 158917851 158918200 -25370462 + MER7A DNA MER2_type 1 346 0 858 116 0 0 chr4 158918727 158918839 -25369823 - AluSq/x SINE Alu -197 116 5 654 133 0 0 chr4 158918841 158918939 -25369723 + AluSg/x SINE Alu 208 305 -5 1304 180 7 102 chr4 158919522 158919827 -25368835 - AluJo SINE Alu -24 288 13 334 331 15 8 chr4 158920466 158920599 -25368063 + MER94 DNA DNA 1 134 0 234 326 0 11 chr4 158922170 158922265 -25366397 + (TA)n Simple_repeat Simple_repeat 2 95 0 6140 93 24 150 chr4 158925571 158925822 -25362840 - Tigger3b DNA MER2_type -1797 1232 951 1437 99 0 11 chr4 158925822 158926013 -25362649 + AluSq SINE Alu 100 288 -25 6140 93 24 150 chr4 158926013 158926651 -25362011 - Tigger3b DNA MER2_type -2078 951 362 3402 30 0 108 chr4 158926651 158927152 -25361510 - L1PA4 LINE L1 -3 6152 5706 6140 93 24 150 chr4 158927152 158927474 -25361188 - Tigger3b DNA MER2_type -2667 362 1 380 293 87 109 chr4 158929448 158929851 -25358811 - L2 LINE L2 0 3313 2920 1902 117 7 50 chr4 158929874 158930172 -25358490 + AluSg SINE Alu 2 286 -24 225 0 0 0 chr4 158930291 158930316 -25358346 + (A)n Simple_repeat Simple_repeat 1 25 0 740 206 15 49 chr4 158930334 158930538 -25358124 - L2 LINE L2 -431 2883 2687 2463 58 0 0 chr4 158930539 158930834 -25357828 + AluY SINE Alu 1 295 -16 21 36 0 0 chr4 158931156 158931184 -25357478 + AT_rich Low_complexity Low_complexity 1 28 0 188 228 18 35 chr4 158932318 158932375 -25356287 - MIR SINE MIR -114 94 39 460 276 138 31 chr4 158933504 158933700 -25354962 - MIR SINE MIR 0 262 46 28 61 0 0 chr4 158934721 158934770 -25353892 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr4 158935034 158935056 -25353606 + AT_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chr4 158935165 158935195 -25353467 + AT_rich Low_complexity Low_complexity 1 30 0 183 235 62 37 chr4 158936218 158936299 -25352363 + L2 LINE L2 1692 1774 -1540 234 0 0 0 chr4 158936422 158936448 -25352214 + (TTG)n Simple_repeat Simple_repeat 2 27 0 376 296 28 57 chr4 158937262 158937438 -25351224 + L2 LINE L2 3143 3313 0 1795 158 27 3 chr4 158937822 158938114 -25350548 - AluSx SINE Alu -13 299 1 4079 118 24 3 chr4 158938281 158938914 -25349748 - L1PB3 LINE L1 -1 6153 5508 193 373 61 38 chr4 158939016 158939228 -25349434 + L2 LINE L2 2396 2612 -702 350 259 104 50 chr4 158939546 158939747 -25348915 + L2 LINE L2 3098 3309 -4 1964 125 11 0 chr4 158939809 158940129 -25348533 + AluSx SINE Alu 3 325 0 1490 190 10 27 chr4 158940487 158940787 -25347875 - AluJo SINE Alu -11 301 7 520 277 34 28 chr4 158940903 158941080 -25347582 - MIR SINE MIR -72 190 13 324 320 0 47 chr4 158941240 158941390 -25347272 + L3 LINE CR1 1433 1575 -2 266 364 25 16 chr4 158942470 158942591 -25346071 + MER5A DNA MER1_type 61 182 -7 1150 188 24 90 chr4 158943021 158943356 -25345306 - MLT1C LTR MaLR 0 467 155 1148 159 0 0 chr4 158943360 158943530 -25345132 + AluSg/x SINE Alu 135 304 -6 606 184 30 71 chr4 158943531 158943699 -25344963 - MLT1C LTR MaLR -301 166 6 681 235 30 70 chr4 158943761 158943991 -25344671 - MLT1D LTR MaLR -284 221 1 610 195 8 0 chr4 158944009 158944132 -25344530 - FLAM_C SINE Alu -3 140 17 214 406 32 8 chr4 158944137 158944260 -25344402 + L3b LINE CR1 1456 1581 -2 357 160 90 10 chr4 158945371 158945471 -25343191 + Charlie7 DNA MER1_type 36 143 -2469 554 327 84 42 chr4 158946342 158946746 -25341916 + MLT1K LTR MaLR 10 430 -158 799 235 85 5 chr4 158948131 158948331 -25340331 - MER58A DNA MER1_type -8 216 1 573 218 18 0 chr4 158949968 158950078 -25338584 - MER119 DNA MER1_type 0 583 472 * 898 274 42 0 chr4 158950076 158950291 -25338371 - MER119 DNA MER1_type -357 226 3 23 33 0 0 chr4 158950864 158950894 -25337768 + AT_rich Low_complexity Low_complexity 1 30 0 324 111 0 0 chr4 158950975 158951029 -25337633 + (TG)n Simple_repeat Simple_repeat 2 55 0 472 214 31 0 chr4 158952446 158952544 -25336118 + MIR SINE MIR 100 200 -62 2201 131 0 3 chr4 158952815 158953128 -25335534 - AluSx SINE Alu 0 312 1 443 133 0 12 chr4 158953194 158953277 -25335385 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 580 189 0 0 chr4 158955130 158955225 -25333437 + AluJb SINE Alu 23 117 -195 512 150 0 0 chr4 158955638 158955718 -25332944 + LTR23 LTR ERV1 321 400 -37 250 255 67 27 chr4 158956065 158956214 -25332448 + L1ME3A LINE L1 5783 5937 -233 391 303 109 8 chr4 158956782 158956901 -25331761 - MIR SINE MIR -112 150 20 2055 125 0 31 chr4 158958093 158958412 -25330250 + AluSx SINE Alu 1 309 -3 22 56 0 0 chr4 158959046 158959082 -25329580 + AT_rich Low_complexity Low_complexity 1 36 0 187 299 165 0 chr4 158959352 158959449 -25329213 + MIR SINE MIR 37 149 -113 2180 106 26 0 chr4 158959987 158960289 -25328373 + AluSg SINE Alu 1 310 0 2281 86 0 0 chr4 158960305 158960597 -25328065 + AluSc SINE Alu 6 297 -12 277 274 12 0 chr4 158960662 158960746 -25327916 - Charlie1 DNA MER1_type 0 2761 2677 2098 117 0 4 chr4 158960895 158961207 -25327455 - AluSx SINE Alu 0 316 6 21 36 0 0 chr4 158961598 158961626 -25327036 + AT_rich Low_complexity Low_complexity 1 28 0 413 159 0 0 chr4 158961715 158961784 -25326878 + Tigger2 DNA MER2_type 1 69 -2649 * 2692 138 30 2 chr4 158961782 158962209 -25326453 + Tigger2 DNA MER2_type 2280 2718 0 221 255 11 11 chr4 158962224 158962318 -25326344 + (TA)n Simple_repeat Simple_repeat 1 94 0 22 0 0 0 chr4 158962643 158962665 -25325997 + AT_rich Low_complexity Low_complexity 1 22 0 769 313 70 62 chr4 158964762 158965391 -25323271 - L1MEc LINE L1 -5327 1069 428 216 0 0 0 chr4 158965391 158965415 -25323247 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 769 313 70 62 chr4 158965415 158965769 -25322893 - L1MEc LINE L1 -5968 428 78 184 208 117 52 chr4 158967140 158967217 -25321445 + L2 LINE L2 2636 2717 -597 1616 215 8 30 chr4 158967565 158967933 -25320729 - MLT1A1 LTR MaLR 0 365 6 981 273 138 35 chr4 158968092 158968612 -25320050 + MLT1L LTR MaLR 7 580 -35 196 302 0 19 chr4 158968694 158968747 -25319915 - MIR SINE MIR -185 77 26 12253 122 47 22 chr4 158970370 158972353 -25316309 - Tigger4(Zombi) DNA MER2_type 0 2731 699 2779 238 74 22 chr4 158972364 158973307 -25315355 - L1M4 LINE L1 -1690 4456 3465 1100 183 52 102 chr4 158973311 158973771 -25314891 - MER69B DNA AcHobo -285 941 505 27 49 0 0 chr4 158974186 158974227 -25314435 + AT_rich Low_complexity Low_complexity 1 41 0 26 50 0 0 chr4 158974611 158974651 -25314011 + AT_rich Low_complexity Low_complexity 1 40 0 24 53 0 0 chr4 158974891 158974929 -25313733 + AT_rich Low_complexity Low_complexity 1 38 0 6893 43 16 21 chr4 158975997 158976943 -25311719 - L1PA4 LINE L1 -2 6153 5242 895 98 0 8 chr4 158976943 158977066 -25311596 - AluY SINE Alu -189 122 1 27 29 0 0 chr4 158978736 158978770 -25309892 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr4 158978970 158978998 -25309664 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 158979107 158979129 -25309533 + AT_rich Low_complexity Low_complexity 1 22 0 2632 37 0 6 chr4 158979241 158979592 -25309070 - L1P LINE L1 -2844 3302 2954 1948 38 0 0 chr4 158979592 158979831 -25308831 + L1P LINE L1 3314 3552 -2594 * 14514 155 65 8 chr4 158979825 158981881 -25306781 - L1PBa LINE L1 -1201 5661 3723 2030 137 3 10 chr4 158981881 158982187 -25306475 + AluSx SINE Alu 3 306 -6 14514 155 65 8 chr4 158982187 158985048 -25303614 - L1PBa LINE L1 -3139 3723 464 4544 152 24 19 chr4 158985049 158985847 -25302815 + HSMAR2 DNA Mariner 313 1114 -188 242 245 11 21 chr4 158985848 158985942 -25302720 - L1MC4 LINE L1 -1342 6700 6608 955 79 40 0 chr4 158985944 158986096 -25302566 - L1PBa LINE L1 -4802 2061 1904 705 185 8 0 chr4 158986096 158986226 -25302436 + HSMAR2 DNA Mariner 982 1112 -190 243 105 0 0 chr4 158986234 158986272 -25302390 - L1PBa LINE L1 -4801 2062 2025 279 100 0 0 chr4 158986279 158986319 -25302343 - L1PBa LINE L1 -4801 2062 2023 228 67 0 0 chr4 158986370 158986400 -25302262 + (TATATG)n Simple_repeat Simple_repeat 1 30 0 634 114 286 0 chr4 158986400 158986501 -25302161 + HSMAR2 DNA Mariner 1122 1193 -109 186 71 0 0 chr4 158986501 158986529 -25302133 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 634 114 286 0 chr4 158986529 158986567 -25302095 + HSMAR2 DNA Mariner 1193 1301 -1 252 100 0 0 chr4 158986967 158987007 -25301655 + (TG)n Simple_repeat Simple_repeat 1 40 0 24 32 0 0 chr4 158987704 158987735 -25300927 + AT_rich Low_complexity Low_complexity 1 31 0 203 324 25 37 chr4 158988511 158988639 -25300023 - MIR SINE MIR -62 146 23 1200 222 152 26 chr4 158990565 158990980 -25297682 + MLT1C LTR MaLR 1 467 0 2499 70 0 0 chr4 158991845 158992144 -25296518 + AluSg SINE Alu 1 299 -11 192 346 50 0 chr4 158992869 158992970 -25295692 + L2 LINE L2 2774 2879 -435 181 349 79 0 chr4 158993000 158993063 -25295599 - L2 LINE L2 -49 3223 3156 352 353 43 7 chr4 158993102 158993241 -25295421 - L2 LINE L2 -194 3078 2935 21 0 0 0 chr4 158994519 158994540 -25294122 + AT_rich Low_complexity Low_complexity 1 21 0 395 291 60 26 chr4 158995105 158995256 -25293406 - L3 LINE CR1 -14 1563 1408 484 287 78 86 chr4 158995281 158995654 -25293008 + L2 LINE L2 2944 3313 0 * 487 225 39 31 chr4 158995652 158995781 -25292881 - L3 LINE CR1 -208 1369 1240 290 278 14 0 chr4 158996160 158996232 -25292430 + MIR3 SINE MIR 119 191 -17 2081 135 3 0 chr4 158997470 158997782 -25290880 - AluSq SINE Alu 0 313 1 2051 112 7 26 chr4 158998448 158998752 -25289910 + AluSx SINE Alu 1 298 -14 2067 143 37 11 chr4 158999272 158999649 -25289013 - Tigger1 DNA MER2_type -2 2416 2030 4634 138 37 0 chr4 158999751 159000847 -25287815 - L1P4 LINE L1 -635 5533 4379 9663 135 44 5 chr4 159000848 159002695 -25285967 - Tigger1 DNA MER2_type -437 1981 26 1199 249 39 33 chr4 159002944 159003333 -25285329 - MLT1E LTR MaLR -3 590 200 336 288 0 48 chr4 159003372 159003518 -25285144 - MLT1E LTR MaLR -515 139 1 2268 118 0 0 chr4 159004334 159004638 -25284024 + AluSx SINE Alu 1 304 -8 1701 188 71 42 chr4 159006185 159006637 -25282025 + MLT1C LTR MaLR 3 467 0 800 166 30 12 chr4 159006760 159006929 -25281733 + MER20 DNA MER1_type 1 172 -47 196 162 81 0 chr4 159006999 159007036 -25281626 - L2 LINE L2 -5 3308 3269 296 371 53 20 chr4 159010810 159010961 -25277701 - L2 LINE L2 -12 3260 3105 626 283 51 42 chr4 159011092 159011424 -25277238 + MLT1K LTR MaLR 90 424 -164 645 275 48 57 chr4 159011481 159011772 -25276890 - HERVL-C2 LTR ERVL -5326 328 39 6232 98 26 1 chr4 159011772 159013131 -25275531 + L1PA11 LINE L1 4811 6174 0 645 275 48 57 chr4 159013131 159013170 -25275492 - HERVL-C2 LTR ERVL -5615 39 1 878 178 24 0 chr4 159013170 159013339 -25275323 - MLT2C2 LTR ERVL 0 464 292 483 71 14 0 chr4 159013342 159013412 -25275250 - MLT2D LTR ERVL -269 145 75 273 250 78 35 chr4 159013519 159013635 -25275027 + L1MA10 LINE L1 5984 6263 -62 803 246 58 118 chr4 159013635 159014223 -25274439 + MLT1F1 LTR MaLR 1 559 -8 196 206 0 32 chr4 159014274 159014337 -25274325 + GA-rich Low_complexity Low_complexity 2 62 0 731 299 82 31 chr4 159015209 159015634 -25273028 + MLT1L LTR MaLR 3 449 -166 625 265 178 63 chr4 159015900 159016170 -25272492 - MLT1K LTR MaLR -100 488 150 2266 116 3 29 chr4 159016170 159016515 -25272147 + MER1B DNA MER1_type 2 337 0 625 265 178 63 chr4 159016515 159016670 -25271992 - MLT1K LTR MaLR -438 150 14 382 279 81 10 chr4 159017330 159017527 -25271135 - MLT1K LTR MaLR -3 585 375 268 173 0 0 chr4 159017886 159017938 -25270724 - MER103 DNA DNA -105 61 10 1675 192 44 0 chr4 159018749 159019109 -25269553 - MLT1B LTR MaLR -8 382 7 532 338 107 36 chr4 159019113 159019295 -25269367 - L2 LINE L2 -33 3239 3071 743 196 175 16 chr4 159019295 159019484 -25269178 + MER20 DNA MER1_type 1 219 0 532 338 107 36 chr4 159019484 159019798 -25268864 - L2 LINE L2 -201 3071 2722 376 371 92 39 chr4 159020278 159020976 -25267686 - L2 LINE L2 -581 2733 1999 697 226 196 5 chr4 159021105 159021304 -25267358 - MIR SINE MIR -21 241 5 219 250 52 62 chr4 159021343 159021439 -25267223 + L2 LINE L2 3215 3309 -4 806 144 14 0 chr4 159021568 159021714 -25266948 + GA-rich Low_complexity Low_complexity 2 149 0 470 355 217 0 chr4 159022715 159023245 -25265417 + L2 LINE L2 2159 2803 -511 5170 275 126 15 chr4 159023263 159025301 -25263361 + L2 LINE L2 873 3149 -164 192 77 0 0 chr4 159025335 159025361 -25263301 + (TG)n Simple_repeat Simple_repeat 2 27 0 305 284 106 43 chr4 159025489 159025630 -25263032 - MIR SINE MIR -109 153 4 1376 279 17 43 chr4 159026032 159026484 -25262178 - L1MC4 LINE L1 -566 7476 7047 2548 54 0 10 chr4 159026484 159026797 -25261865 + AluY SINE Alu 1 310 -1 1376 279 17 43 chr4 159026797 159027038 -25261624 - L1MC4 LINE L1 -995 7047 6801 748 205 114 14 chr4 159027650 159027860 -25260802 + L1MC4 LINE L1 7811 8041 -1 774 237 21 41 chr4 159028004 159028189 -25260473 + MIR SINE MIR 16 199 -63 2151 102 0 0 chr4 159028189 159028514 -25260148 + AluY SINE Alu 1 325 0 328 185 31 138 chr4 159028674 159028734 -25259928 + MER103 DNA DNA 1 42 -124 2053 96 7 11 chr4 159028734 159029039 -25259623 - AluSc SINE Alu 0 304 1 328 185 31 138 chr4 159029039 159029107 -25259555 + MER103 DNA DNA 42 116 -50 476 104 12 84 chr4 159031028 159031288 -25257374 + (TTATA)n Simple_repeat Simple_repeat 1 241 0 460 131 23 29 chr4 159031410 159031585 -25257077 + (TTATA)n Simple_repeat Simple_repeat 1 174 0 25 0 0 0 chr4 159031585 159031610 -25257052 + AT_rich Low_complexity Low_complexity 1 25 0 607 57 16 83 chr4 159031610 159031803 -25256859 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 290 71 18 36 chr4 159031806 159031862 -25256800 + (TTATA)n Simple_repeat Simple_repeat 5 59 0 395 48 103 24 chr4 159031865 159032030 -25256632 + (TA)n Simple_repeat Simple_repeat 2 179 0 438 260 156 5 chr4 159032203 159032397 -25256265 + MIR SINE MIR 42 262 0 392 302 34 48 chr4 159032644 159032795 -25255867 - MIR SINE MIR -63 145 9 1619 281 98 5 chr4 159033297 159033428 -25255234 + L2 LINE L2 2171 2288 -1026 1935 100 6 87 chr4 159033428 159033749 -25254913 - AluSg SINE Alu -15 295 1 1619 281 98 5 chr4 159033749 159034221 -25254441 + L2 LINE L2 2288 2830 -484 565 293 27 7 chr4 159034365 159034515 -25254147 + L2 LINE L2 2864 3016 -297 4575 118 16 24 chr4 159034627 159035375 -25253287 + MER4E LTR ERV1 33 774 -5 312 260 0 14 chr4 159036240 159036313 -25252349 + GA-rich Low_complexity Low_complexity 4 75 0 324 0 0 0 chr4 159036394 159036430 -25252232 + (CA)n Simple_repeat Simple_repeat 2 37 0 2007 120 24 51 chr4 159036886 159037260 -25251402 + THE1B LTR MaLR 1 364 0 3662 138 14 163 chr4 159037264 159038325 -25250337 + MER4D LTR ERV1 1 903 0 1521 137 36 74 chr4 159041405 159041742 -25246920 + MER44D DNA MER2_type 1 594 -15 1574 137 50 30 chr4 159042659 159042959 -25245703 - THE1C LTR MaLR -69 306 1 23 54 0 0 chr4 159044138 159044175 -25244487 + AT_rich Low_complexity Low_complexity 1 37 0 200 329 143 21 chr4 159045636 159045776 -25242886 - L2 LINE L2 -608 2706 2550 2221 121 0 0 chr4 159045797 159046094 -25242568 - AluSc SINE Alu -12 297 1 407 227 85 50 chr4 159046185 159046249 -25242413 + MLT1E LTR MaLR 7 67 -526 324 0 0 0 chr4 159046249 159046285 -25242377 + (TG)n Simple_repeat Simple_repeat 2 37 0 407 227 85 50 chr4 159046285 159046361 -25242301 + MLT1E LTR MaLR 67 152 -441 * 1142 240 29 35 chr4 159046329 159046642 -25242020 + MLT1E LTR MaLR 283 593 0 1090 182 19 16 chr4 159047927 159048185 -25240477 + L1PB4 LINE L1 5884 6142 -14 2382 109 0 0 chr4 159048422 159048733 -25239929 + AluSx SINE Alu 1 311 -1 217 264 54 40 chr4 159049072 159049220 -25239442 + L2 LINE L2 3079 3228 -85 180 327 0 0 chr4 159049199 159049251 -25239411 + MIR SINE MIR 205 256 -6 * 204 238 0 0 chr4 159049385 159049448 -25239214 + (CTA)n Simple_repeat Simple_repeat 1 63 0 445 228 30 0 chr4 159049460 159049561 -25239101 - MIR SINE MIR 0 262 159 303 259 47 0 chr4 159050023 159050108 -25238554 + MLT1A1 LTR MaLR 4 92 -282 1277 206 22 7 chr4 159050149 159050425 -25238237 + MLT1A1 LTR MaLR 86 365 0 2223 121 0 0 chr4 159050439 159050744 -25237918 - AluSx SINE Alu -7 305 1 1070 186 42 9 chr4 159051716 159051931 -25236731 - MLT1A1 LTR MaLR 0 365 144 297 250 32 43 chr4 159052202 159052374 -25236288 + MIR SINE MIR 18 254 -8 253 374 63 35 chr4 159053896 159054182 -25234480 + L2 LINE L2 2979 3272 0 327 25 0 0 chr4 159054366 159054406 -25234256 - L1P1 LINE L1 -497 5658 5619 226 53 0 0 chr4 159054404 159054442 -25234220 + L1PA6 LINE L1 6115 6152 -2 * 315 0 0 0 chr4 159055237 159055272 -25233390 + (CA)n Simple_repeat Simple_repeat 2 36 0 2036 120 17 13 chr4 159056254 159056555 -25232107 + AluSx SINE Alu 1 302 -10 485 279 55 28 chr4 159057602 159057856 -25230806 - MIR SINE MIR 0 262 2 30 83 0 0 chr4 159058032 159058104 -25230558 + AT_rich Low_complexity Low_complexity 1 72 0 273 208 0 0 chr4 159058380 159058428 -25230234 - HAL1 LINE L1 -979 1528 1481 372 59 0 0 chr4 159058452 159058503 -25230159 + (TC)n Simple_repeat Simple_repeat 2 52 0 990 285 158 34 chr4 159058506 159059418 -25229244 - HAL1 LINE L1 -1052 1455 431 402 73 0 0 chr4 159059520 159059575 -25229087 + L1MA3 LINE L1 6251 6305 0 359 315 45 39 chr4 159059592 159059770 -25228892 - HAL1 LINE L1 -2130 377 199 22 0 0 0 chr4 159059821 159059843 -25228819 + AT_rich Low_complexity Low_complexity 1 22 0 256 134 67 15 chr4 159060069 159060177 -25228485 + (TA)n Simple_repeat Simple_repeat 2 120 -22 2011 125 17 10 chr4 159060177 159060473 -25228189 + AluSq SINE Alu 1 298 -15 256 134 67 15 chr4 159060473 159060498 -25228164 + (TA)n Simple_repeat Simple_repeat 120 142 0 266 330 62 0 chr4 159060583 159060762 -25227900 - L1ME LINE L1 -483 5687 5498 2339 80 0 40 chr4 159060860 159061184 -25227478 - AluY SINE Alu 0 311 1 311 305 0 0 chr4 159061208 159061290 -25227372 - HAL1 LINE L1 -2423 84 3 238 247 21 10 chr4 159061704 159061801 -25226861 - L1ME LINE L1 -341 5821 5724 309 294 96 46 chr4 159062153 159062350 -25226312 - MLT1K LTR MaLR -317 271 65 1532 165 24 0 chr4 159062816 159063113 -25225549 + L1MB2 LINE L1 5861 6164 -7 6382 95 7 4 chr4 159063291 159065051 -25223611 - L1PA8A LINE L1 -32 6099 4336 330 24 0 0 chr4 159065055 159065096 -25223566 + L1PA8A LINE L1 4274 4314 -1832 1319 287 32 8 chr4 159065347 159065723 -25222939 + L2 LINE L2 2539 2923 -391 21 36 0 0 chr4 159065864 159065892 -25222770 + AT_rich Low_complexity Low_complexity 1 28 0 597 214 148 35 chr4 159066942 159067171 -25221491 + LTR16B LTR ERVL 122 376 -88 238 33 0 0 chr4 159067653 159067683 -25220979 + LTR50 LTR ERVL 9 38 -757 1203 229 161 65 chr4 159067688 159068285 -25220377 - MLT1E1 LTR MaLR 0 654 1 539 243 164 9 chr4 159068285 159068490 -25220172 + LTR50 LTR ERVL 42 279 -516 241 286 108 22 chr4 159068633 159068818 -25219844 + LTR50 LTR ERVL 586 786 -9 777 273 96 45 chr4 159068960 159069429 -25219233 - L1ME LINE L1 -301 5820 5328 1663 115 50 35 chr4 159069569 159069829 -25218833 - AluSx SINE Alu 0 312 49 229 323 0 0 chr4 159070000 159070062 -25218600 + MIR3 SINE MIR 145 206 -2 215 299 51 107 chr4 159070314 159070491 -25218171 + MIR SINE MIR 86 252 -10 * 698 286 9 70 chr4 159070477 159070792 -25217870 - L2 LINE L2 -8 3305 3010 317 222 120 91 chr4 159070868 159071143 -25217519 + HAL1 LINE L1 867 1149 -1358 2037 142 10 0 chr4 159072090 159072386 -25216276 + AluSx SINE Alu 1 299 -13 920 276 38 50 chr4 159072555 159073077 -25215585 + L1ME3A LINE L1 282 797 -5273 6088 92 15 2 chr4 159073077 159074076 -25214586 + L1PB2 LINE L1 5143 6149 -2 242 301 44 18 chr4 159074649 159074762 -25213900 - MLT1-int LTR MaLR -830 541 426 1378 271 114 14 chr4 159075021 159075522 -25213140 - MLT1H1 LTR MaLR -4 551 1 1017 296 64 30 chr4 159075576 159076588 -25212074 + L1ME3A LINE L1 3974 4950 -1154 1603 206 116 44 chr4 159076588 159077069 -25211593 - MLT2B1 LTR ERVL 0 520 5 1017 296 64 30 chr4 159077069 159077202 -25211460 + L1ME3A LINE L1 4950 5077 -1027 1291 245 24 37 chr4 159077202 159077581 -25211081 - MLT1A2 LTR MaLR 0 374 1 1017 296 64 30 chr4 159077581 159077696 -25210966 + L1ME3A LINE L1 5077 5187 -917 3332 140 30 54 chr4 159077696 159078323 -25210339 + LTR9 LTR ERV1 1 612 0 1017 296 64 30 chr4 159078323 159078706 -25209956 + L1ME3A LINE L1 5187 5782 -322 186 103 0 0 chr4 159078734 159078763 -25209899 + (TAA)n Simple_repeat Simple_repeat 1 29 0 526 262 68 44 chr4 159078778 159078984 -25209678 - MIR SINE MIR -24 238 28 21 0 0 0 chr4 159079200 159079221 -25209441 + AT_rich Low_complexity Low_complexity 1 21 0 189 214 0 0 chr4 159079235 159079277 -25209385 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 258 202 174 18 chr4 159079442 159079551 -25209111 + L1ME LINE L1 5395 5520 -644 828 86 113 7 chr4 159079708 159079859 -25208803 - L1MA7 LINE L1 0 6291 6125 254 313 16 8 chr4 159080670 159080798 -25207864 + L1ME LINE L1 5586 5714 -407 197 314 0 0 chr4 159082030 159082081 -25206581 + L2 LINE L2 3257 3307 -6 431 271 31 63 chr4 159083206 159083337 -25205325 - L1MC4 LINE L1 0 8042 7921 1692 195 54 11 chr4 159083337 159083686 -25204976 + MLT1A1 LTR MaLR 1 364 -1 431 271 31 63 chr4 159083686 159083809 -25204853 - L1MC4 LINE L1 -121 7921 7796 2309 84 0 0 chr4 159083833 159084153 -25204509 - AluSq SINE Alu 0 320 1 21 57 0 0 chr4 159084808 159084843 -25203819 + AT_rich Low_complexity Low_complexity 1 35 0 245 94 0 132 chr4 159088274 159088327 -25200335 - MLT1A2 LTR MaLR -328 46 1 3006 97 0 0 chr4 159088722 159089134 -25199528 + L1PA15 LINE L1 5754 6165 0 1837 254 46 88 chr4 159089898 159091198 -25197464 + L1MCc LINE L1 672 1921 -4889 342 45 0 0 chr4 159091250 159091294 -25197368 + (TG)n Simple_repeat Simple_repeat 1 44 0 214 216 0 39 chr4 159091521 159091572 -25197090 - L2 LINE L2 0 3313 3265 1835 116 0 91 chr4 159092932 159093252 -25195410 - AluSx SINE Alu -15 297 7 229 174 0 2 chr4 159093407 159093648 -25195014 + AluJb SINE Alu 1 290 -10 573 220 159 18 chr4 159093917 159094144 -25194518 - LTR50 LTR ERVL -3 792 534 849 150 0 0 chr4 159094221 159094361 -25194301 - MLT1A1 LTR MaLR 0 365 226 2196 127 0 6 chr4 159094403 159094717 -25193945 + AluSx SINE Alu 1 312 0 2125 97 90 42 chr4 159094717 159095048 -25193614 - MSTA LTR MaLR -27 391 44 3331 53 41 90 chr4 159095048 159095422 -25193240 + MLT2A1 LTR ERVL 1 376 -68 201 74 0 0 chr4 159095422 159095449 -25193213 + (TA)n Simple_repeat Simple_repeat 2 28 0 3331 53 41 90 chr4 159095449 159095515 -25193147 + MLT2A1 LTR ERVL 376 444 0 2125 97 90 42 chr4 159095515 159095562 -25193100 - MSTA LTR MaLR -374 44 1 1114 179 8 71 chr4 159095563 159095686 -25192976 - MLT1A1 LTR MaLR -138 227 125 2095 118 10 14 chr4 159095686 159095983 -25192679 + AluSq SINE Alu 1 296 -17 1114 179 8 71 chr4 159095983 159096099 -25192563 - MLT1A1 LTR MaLR -240 125 3 307 303 59 0 chr4 159096109 159096228 -25192434 - ERVL LTR ERVL -505 5259 5134 330 294 11 22 chr4 159098124 159098216 -25190446 + L2 LINE L2 3191 3281 -32 1269 214 29 32 chr4 159098653 159098933 -25189729 + AluJo SINE Alu 1 279 -33 270 0 0 0 chr4 159098933 159098963 -25189699 + (CA)n Simple_repeat Simple_repeat 1 30 0 2155 136 0 0 chr4 159099217 159099518 -25189144 - AluSx SINE Alu -11 301 1 507 270 208 1 chr4 159099980 159100184 -25188478 + MIR SINE MIR 1 245 -17 425 229 37 37 chr4 159101350 159101459 -25187203 - MER77 LTR ERV1 -7 598 490 550 297 87 60 chr4 159101489 159101825 -25186837 - MER77 LTR ERV1 -205 382 53 275 246 0 15 chr4 159101845 159101910 -25186752 + MIR SINE MIR 96 159 -103 1951 113 0 83 chr4 159102846 159103173 -25185489 - AluSx SINE Alu -12 300 1 2106 176 19 8 chr4 159103300 159103659 -25185003 + MLT1A1 LTR MaLR 3 365 0 258 247 41 0 chr4 159105157 159105230 -25183432 + MER20 DNA MER1_type 143 218 -1 199 291 171 17 chr4 159105405 159105522 -25183140 + MIR SINE MIR 66 200 -62 1948 127 7 7 chr4 159105529 159105813 -25182849 + AluSx SINE Alu 1 284 -28 496 69 0 28 chr4 159105813 159105885 -25182777 + L1PA7 LINE L1 6082 6151 -3 301 326 122 23 chr4 159106594 159106766 -25181896 - MIR SINE MIR -54 208 20 222 281 0 0 chr4 159107380 159107437 -25181225 - MIR SINE MIR -2 260 204 1086 25 31 6 chr4 159108400 159108559 -25180103 + (TAGA)n Simple_repeat Simple_repeat 4 166 0 659 37 28 19 chr4 159108578 159108610 -25180052 + (TAGA)n Simple_repeat Simple_repeat 1 141 0 659 37 28 19 chr4 159108610 159108718 -25179944 + (TAGA)n Simple_repeat Simple_repeat 2 110 0 31 26 0 0 chr4 159111698 159111736 -25176926 + AT_rich Low_complexity Low_complexity 1 38 0 2346 102 0 6 chr4 159111784 159112098 -25176564 + AluSx SINE Alu 1 312 0 2547 53 0 0 chr4 159112250 159112549 -25176113 + AluY SINE Alu 1 299 -12 394 207 0 24 chr4 159112788 159112870 -25175792 - MIR SINE MIR 0 262 183 309 311 53 23 chr4 159113894 159114026 -25174636 + MIR SINE MIR 17 152 -56 212 135 0 58 chr4 159114120 159114172 -25174490 + (ATGGTG)n Simple_repeat Simple_repeat 6 54 0 227 297 9 45 chr4 159115251 159115362 -25173300 + L3 LINE CR1 901 1007 -570 1613 199 27 0 chr4 159115362 159115654 -25173008 + AluJb SINE Alu 1 300 -12 222 208 0 0 chr4 159115676 159115724 -25172938 + GA-rich Low_complexity Low_complexity 3 50 0 2115 116 7 7 chr4 159115757 159116058 -25172604 - AluSx SINE Alu -11 301 1 2563 65 3 0 chr4 159116593 159116901 -25171761 - AluY SINE Alu -2 309 1 390 304 94 27 chr4 159117114 159117338 -25171324 + MLT1J2 LTR MaLR 66 304 -142 2482 69 0 3 chr4 159117401 159117707 -25170955 + AluY SINE Alu 1 305 -6 230 228 18 0 chr4 159118148 159118205 -25170457 + MLT1J2 LTR MaLR 86 143 -307 251 299 58 0 chr4 159118353 159118440 -25170222 + MLT1I LTR MaLR 315 406 -3 981 256 53 63 chr4 159118616 159119030 -25169632 + MLT1J1 LTR MaLR 36 445 -1 197 222 0 0 chr4 159119373 159119409 -25169253 + L2 LINE L2 3262 3297 -16 22 35 0 0 chr4 159120101 159120130 -25168532 + AT_rich Low_complexity Low_complexity 1 29 0 2316 94 3 0 chr4 159120619 159120917 -25167745 + AluSg SINE Alu 1 299 -11 183 234 0 43 chr4 159121734 159121781 -25166881 + L2 LINE L2 3214 3258 -14 197 306 181 0 chr4 159121809 159121881 -25166781 - L2 LINE L2 -2 3311 3227 25 31 0 0 chr4 159121912 159121944 -25166718 + AT_rich Low_complexity Low_complexity 1 32 0 475 228 134 16 chr4 159121996 159122123 -25166539 + MIR SINE MIR 104 245 -17 187 220 0 40 chr4 159122753 159122786 -25165876 + L2 LINE L2 1279 1309 -2005 227 277 57 9 chr4 159122786 159122923 -25165739 - MER5A DNA MER1_type 0 178 4 313 284 110 0 chr4 159122937 159123064 -25165598 + L2 LINE L2 1316 1456 -1858 826 295 113 32 chr4 159123067 159123508 -25165154 + L2 LINE L2 1707 2183 -1131 2067 175 103 33 chr4 159124938 159125396 -25163266 + LTR2B LTR ERV1 1 490 0 24 32 0 0 chr4 159126206 159126237 -25162425 + AT_rich Low_complexity Low_complexity 1 31 0 260 322 111 29 chr4 159127021 159127180 -25161482 - MER5A DNA MER1_type -3 186 11 2426 46 26 10 chr4 159127180 159127484 -25161178 - AluY SINE Alu -2 309 1 260 322 111 29 chr4 159127484 159127495 -25161167 - MER5A DNA MER1_type -178 11 2 200 348 52 64 chr4 159128251 159128484 -25160178 + L2 LINE L2 3034 3263 -9 35 41 0 0 chr4 159128532 159128581 -25160081 + AT_rich Low_complexity Low_complexity 1 49 0 335 211 21 63 chr4 159128985 159129080 -25159582 - MER31A LTR ERV1 -42 443 353 218 268 0 0 chr4 159129109 159129165 -25159497 + (TATATG)n Simple_repeat Simple_repeat 5 60 0 646 255 84 80 chr4 159129524 159129763 -25158899 + MIR SINE MIR 23 262 0 679 255 72 0 chr4 159129791 159129944 -25158718 - MER96 DNA MER1_type? -11 164 1 540 194 201 7 chr4 159130879 159131018 -25157644 - MER4C LTR ERV1 0 465 300 1233 158 126 47 chr4 159131083 159131400 -25157262 - MER4A LTR ERV1 -322 342 1 1443 206 40 93 chr4 159131533 159132008 -25156654 + LTR16A1 LTR ERVL 8 457 0 4700 148 50 5 chr4 159134023 159134838 -25153824 + L1PB4 LINE L1 5305 6156 0 243 350 112 7 chr4 159136529 159136672 -25151990 - MIR SINE MIR -85 177 20 198 0 0 0 chr4 159136822 159136844 -25151818 + (TA)n Simple_repeat Simple_repeat 2 23 0 876 225 121 7 chr4 159136845 159137125 -25151537 - L1ME4a LINE L1 -32 6089 5778 551 287 28 6 chr4 159137160 159137341 -25151321 - MIR SINE MIR -49 213 29 442 272 65 124 chr4 159137400 159137832 -25150830 - L1ME4a LINE L1 -405 5716 5313 2239 59 0 4 chr4 159137832 159138103 -25150559 - AluY SINE Alu -13 298 29 442 272 65 124 chr4 159138103 159138144 -25150518 - L1ME4a LINE L1 -808 5313 5271 209 191 95 0 chr4 159138308 159138350 -25150312 - L2 LINE L2 0 3313 3268 4620 136 11 12 chr4 159141093 159141816 -25146846 + MER50 LTR ERV1 1 722 -12 6214 143 33 21 chr4 159141817 159143548 -25145114 + MER50-int LTR ERV1 8 1850 -5355 * 8890 188 31 26 chr4 159143542 159145286 -25143376 + MER50-int LTR ERV1 2787 4540 -2665 9512 91 26 11 chr4 159145287 159146765 -25141897 + MER50-int LTR ERV1 4185 6205 -847 2468 122 8 0 chr4 159146747 159147117 -25141545 + MER50-int LTR ERV1 6825 7197 -8 * 3800 151 29 14 chr4 159147117 159147811 -25140851 + MER50 LTR ERV1 1 704 -30 849 244 72 5 chr4 159148758 159148967 -25139695 - MIR SINE MIR -33 229 7 547 191 0 0 chr4 159150338 159150443 -25138219 + Tigger3(Golem) DNA MER2_type 3 107 -2922 * 4087 111 27 56 chr4 159150435 159150498 -25138164 + Tigger3(Golem) DNA MER2_type 2277 2340 -688 1681 212 0 7 chr4 159150498 159150800 -25137862 - AluJo SINE Alu -12 300 1 4087 111 27 56 chr4 159150800 159151025 -25137637 + Tigger3(Golem) DNA MER2_type 2340 2570 -458 2199 116 0 3 chr4 159151025 159151319 -25137343 + AluSc SINE Alu 1 293 -16 4087 111 27 56 chr4 159151319 159151803 -25136859 + Tigger3(Golem) DNA MER2_type 2570 3028 0 22 35 0 0 chr4 159151838 159151867 -25136795 + AT_rich Low_complexity Low_complexity 1 29 0 33 0 0 0 chr4 159152398 159152431 -25136231 + AT_rich Low_complexity Low_complexity 1 33 0 1543 154 105 54 chr4 159153641 159154012 -25134650 + MLT1B LTR MaLR 1 390 0 449 264 98 68 chr4 159154023 159154258 -25134404 - MIR SINE MIR -1 261 20 903 232 73 18 chr4 159154282 159154502 -25134160 + MIR SINE MIR 10 241 -21 212 261 108 81 chr4 159154572 159154683 -25133979 - MIR SINE MIR -60 202 89 257 330 140 21 chr4 159156231 159156516 -25132146 + L2 LINE L2 2607 2925 -389 1503 146 32 0 chr4 159156644 159156864 -25131798 - AluJb SINE Alu -1 311 85 282 304 49 20 chr4 159156930 159157032 -25131630 + L2 LINE L2 3137 3241 -31 2253 87 3 44 chr4 159157897 159158218 -25130444 - AluSg SINE Alu -2 308 1 646 200 157 22 chr4 159160491 159160676 -25127986 + MER63A DNA MER1_type 1 210 0 2298 104 0 0 chr4 159160801 159161100 -25127562 + AluSg1 SINE Alu 1 299 -10 1134 124 0 32 chr4 159161100 159161337 -25127325 + AluSg/x SINE Alu 134 364 0 2355 98 0 0 chr4 159161887 159162184 -25126478 + AluSx SINE Alu 1 297 -15 215 314 105 0 chr4 159162783 159162869 -25125793 + L3 LINE CR1 1249 1343 -234 181 188 42 62 chr4 159162909 159162957 -25125705 + L3 LINE CR1 1516 1562 -15 600 194 200 0 chr4 159163661 159163836 -25124826 - MER63A DNA MER1_type 0 210 1 2051 150 16 0 chr4 159164155 159164580 -25124082 + AluJb SINE Alu 1 430 0 2065 95 67 3 chr4 159164583 159164868 -25123794 + AluSg SINE Alu 1 303 -7 469 259 13 44 chr4 159164876 159165040 -25123622 - MER5A DNA MER1_type -13 176 7 1748 169 53 31 chr4 159165389 159165802 -25122860 - L1MA4 LINE L1 0 6300 5879 217 253 198 11 chr4 159165939 159166030 -25122632 + MIR SINE MIR 35 142 -120 2195 90 4 0 chr4 159166050 159166359 -25122303 + AluSg SINE Alu 1 310 0 412 285 166 0 chr4 159166668 159166819 -25121843 - MER5A DNA MER1_type 0 189 14 28 29 0 0 chr4 159167222 159167257 -25121405 + AT_rich Low_complexity Low_complexity 1 35 0 410 238 23 158 chr4 159168690 159168955 -25119707 - MIR SINE MIR 0 262 34 285 259 254 20 chr4 159169366 159169563 -25119099 + MIR SINE MIR 20 262 0 491 238 0 0 chr4 159169840 159169941 -25118721 + Tigger3(Golem) DNA MER2_type 1 101 -2928 3246 131 89 38 chr4 159169951 159170239 -25118423 + Tigger3(Golem) DNA MER2_type 2285 2557 -472 2451 93 0 0 chr4 159170239 159170550 -25118112 - AluSx SINE Alu -1 311 1 3246 131 89 38 chr4 159170550 159170969 -25117693 + Tigger3(Golem) DNA MER2_type 2557 3028 -1 743 141 133 0 chr4 159171192 159171349 -25117313 + FRAM SINE Alu 1 174 0 855 311 146 30 chr4 159171379 159172260 -25116402 - L1M4 LINE L1 -747 5399 4416 1975 139 3 10 chr4 159172595 159172897 -25115765 + AluSx SINE Alu 13 312 0 906 141 7 0 chr4 159173324 159173459 -25115203 - AluSq/x SINE Alu -177 136 1 526 316 53 7 chr4 159173529 159173681 -25114981 + MIR SINE MIR 12 170 -92 2093 146 7 56 chr4 159173681 159173727 -25114935 + MLT1B LTR MaLR 1 48 -342 1784 196 22 3 chr4 159173727 159174085 -25114577 - MLT1A1 LTR MaLR 0 365 1 2093 146 7 56 chr4 159174085 159174448 -25114214 + MLT1B LTR MaLR 48 390 0 222 306 69 0 chr4 159174448 159174520 -25114142 + MIR SINE MIR 166 242 -20 232 193 70 0 chr4 159174548 159174605 -25114057 + GA-rich Low_complexity Low_complexity 1 61 0 298 365 115 0 chr4 159174791 159174895 -25113767 - L2 LINE L2 -4 3268 3153 839 133 144 11 chr4 159175104 159175284 -25113378 + MER3 DNA MER1_type 6 209 0 2096 147 3 6 chr4 159175495 159175808 -25112854 + AluJo SINE Alu 1 312 0 322 279 29 0 chr4 159176627 159176731 -25111931 + MER94 DNA DNA 26 132 -2 344 325 108 36 chr4 159179155 159179349 -25109313 + L2 LINE L2 3096 3303 -10 264 114 186 0 chr4 159179789 159179859 -25108803 + L1MA9 LINE L1 6221 6303 -9 225 0 0 0 chr4 159180055 159180080 -25108582 + (CCCCCG)n Simple_repeat Simple_repeat 1 25 0 210 240 100 75 chr4 159182120 159182320 -25106342 - L2 LINE L2 -963 2351 2147 351 316 58 22 chr4 159183674 159183813 -25104849 - MIR SINE MIR -113 149 6 635 244 19 19 chr4 159184662 159184818 -25103844 + MIR SINE MIR 13 168 -94 407 328 116 4 chr4 159185895 159186127 -25102535 + MIR SINE MIR 5 262 0 495 274 170 14 chr4 159186298 159186510 -25102152 - MIR SINE MIR 0 262 18 439 287 89 15 chr4 159186530 159186732 -25101930 - LTR16A LTR ERVL -111 339 123 2984 104 69 2 chr4 159186804 159187283 -25101379 - LTR26 LTR ERV1 -3 600 90 2059 146 10 0 chr4 159187874 159188183 -25100479 - AluSx SINE Alu 0 312 1 261 163 0 0 chr4 159188566 159188615 -25100047 + CT-rich Low_complexity Low_complexity 1 49 0 1027 105 0 0 chr4 159188615 159188748 -25099914 - AluSg/x SINE Alu -24 286 154 630 0 0 0 chr4 159188752 159188822 -25099840 + (TTCCC)n Simple_repeat Simple_repeat 3 72 0 657 333 18 72 chr4 159189175 159189632 -25099030 - L2 LINE L2 0 3272 2841 1951 116 22 4 chr4 159189857 159190161 -25098501 - AluSx SINE Alu 0 309 1 3310 160 37 8 chr4 159190679 159191267 -25097395 - MER6A DNA MER2_type 0 605 1 234 250 0 0 chr4 159191529 159191585 -25097077 + L2 LINE L2 3217 3272 0 217 398 0 0 chr4 159191630 159191718 -25096944 + MIR SINE MIR 58 145 -117 247 233 0 17 chr4 159191912 159191972 -25096690 - L2 LINE L2 0 3313 3255 1034 308 83 14 chr4 159192126 159192558 -25096104 - L2 LINE L2 -474 2840 2379 180 0 0 0 chr4 159192563 159192583 -25096079 + (T)n Simple_repeat Simple_repeat 1 20 0 937 172 0 0 chr4 159193103 159193254 -25095408 + AluJo SINE Alu 1 151 -161 1449 130 38 54 chr4 159193542 159193870 -25094792 + MER4A LTR ERV1 23 471 -193 2489 70 0 0 chr4 159193870 159194172 -25094490 - AluY SINE Alu -9 302 1 1449 130 38 54 chr4 159194172 159194360 -25094302 + MER4A LTR ERV1 471 660 -4 39 22 0 0 chr4 159194517 159194563 -25094099 + AT_rich Low_complexity Low_complexity 1 46 0 274 256 41 25 chr4 159194769 159194890 -25093772 + MER103 DNA DNA 36 158 -8 443 294 42 34 chr4 159197191 159197374 -25091288 + MIR SINE MIR 32 215 -47 27 0 0 0 chr4 159197458 159197485 -25091177 + AT_rich Low_complexity Low_complexity 1 27 0 25 31 0 0 chr4 159197910 159197942 -25090720 + AT_rich Low_complexity Low_complexity 1 32 0 294 215 31 15 chr4 159198983 159199048 -25089614 - L2 LINE L2 -3 3310 3245 355 306 104 0 chr4 159199327 159199461 -25089201 + MIR SINE MIR 61 208 -54 596 336 82 20 chr4 159199944 159200298 -25088364 - L2 LINE L2 -7 3265 2890 194 178 9 56 chr4 159201007 159201114 -25087548 + (TA)n Simple_repeat Simple_repeat 1 102 0 24 32 0 0 chr4 159201891 159201922 -25086740 + AT_rich Low_complexity Low_complexity 1 31 0 2124 101 10 14 chr4 159202185 159202481 -25086181 - AluSg SINE Alu -15 295 1 687 211 17 46 chr4 159202750 159202925 -25085737 + MIR SINE MIR 87 256 -6 432 196 125 60 chr4 159202923 159203091 -25085571 - MIR SINE MIR -14 248 70 * 696 137 38 142 chr4 159203252 159203463 -25085199 - AluSq SINE Alu -11 302 114 2090 133 7 10 chr4 159203570 159203879 -25084783 + AluJb SINE Alu 1 308 -4 408 296 128 42 chr4 159204798 159205370 -25083292 - L1MC4a LINE L1 -1901 5907 5287 509 164 52 8 chr4 159206263 159206397 -25082265 - MER33 DNA MER1_type 0 363 224 336 163 36 10 chr4 159206398 159206651 -25082011 + AluJo SINE Alu 2 301 -1 551 211 97 34 chr4 159206656 159206831 -25081831 - MER33 DNA MER1_type -138 186 1 1712 179 55 9 chr4 159207411 159207740 -25080922 - MER2 DNA MER2_type 0 344 1 283 308 98 45 chr4 159209235 159209368 -25079294 - MIR3 SINE MIR -53 155 16 347 248 30 40 chr4 159209400 159209501 -25079161 + MIR SINE MIR 23 122 -86 186 43 0 0 chr4 159209694 159209717 -25078945 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 22 35 0 0 chr4 159210755 159210784 -25077878 + AT_rich Low_complexity Low_complexity 1 29 0 204 250 0 0 chr4 159210844 159210908 -25077754 + (TA)n Simple_repeat Simple_repeat 2 65 0 351 282 0 0 chr4 159211493 159211754 -25076908 + C-rich Low_complexity Low_complexity 1 261 0 2376 104 3 0 chr4 159212498 159212805 -25075857 - AluSq SINE Alu -5 308 1 2411 153 52 11 chr4 159213136 159213582 -25075080 - MLT2C2 LTR ERVL 0 464 1 221 255 0 0 chr4 159214433 159214484 -25074178 + CT-rich Low_complexity Low_complexity 2 52 0 2213 113 7 0 chr4 159215758 159216058 -25072604 - AluSx SINE Alu -10 302 1 22 0 0 0 chr4 159216836 159216858 -25071804 + AT_rich Low_complexity Low_complexity 1 22 0 836 133 14 0 chr4 159217098 159217241 -25071421 + L1M2 LINE L1 5599 5743 -554 242 219 27 27 chr4 159218413 159218486 -25070176 + GA-rich Low_complexity Low_complexity 3 75 0 255 31 0 0 chr4 159218953 159218985 -25069677 + (CA)n Simple_repeat Simple_repeat 1 32 0 22 35 0 0 chr4 159219025 159219054 -25069608 + AT_rich Low_complexity Low_complexity 1 29 0 2155 98 24 3 chr4 159219547 159219842 -25068820 - AluSx SINE Alu -11 301 1 1918 131 4 0 chr4 159220309 159220583 -25068079 + AluSx SINE Alu 5 279 -33 1156 139 16 5 chr4 159221027 159221214 -25067448 + MER5A DNA MER1_type 1 189 0 239 346 53 53 chr4 159221214 159221347 -25067315 + MIR SINE MIR 9 141 -121 4263 150 56 38 chr4 159221388 159221829 -25066833 + L1MB8 LINE L1 4891 5323 -855 811 192 192 79 chr4 159221829 159221952 -25066710 + AluJo SINE Alu 3 111 -191 2276 93 3 29 chr4 159221952 159222262 -25066400 + AluSx SINE Alu 1 302 -10 811 192 192 79 chr4 159222262 159222404 -25066258 + AluJo SINE Alu 111 298 -4 4263 150 56 38 chr4 159222404 159223222 -25065440 + L1MB8 LINE L1 5323 6169 -9 26 0 0 0 chr4 159223258 159223284 -25065378 + AT_rich Low_complexity Low_complexity 1 26 0 221 276 69 0 chr4 159226282 159226340 -25062322 - MIR3 SINE MIR -14 194 133 23 33 0 0 chr4 159226862 159226892 -25061770 + AT_rich Low_complexity Low_complexity 1 30 0 2045 159 115 3 chr4 159227019 159227402 -25061260 - MSTB LTR MaLR 0 426 1 24 32 0 0 chr4 159227688 159227719 -25060943 + AT_rich Low_complexity Low_complexity 1 31 0 514 318 93 13 chr4 159228178 159228414 -25060248 - MIR SINE MIR 0 262 8 400 305 121 62 chr4 159228427 159228798 -25059864 - L2 LINE L2 -1002 2312 1920 415 185 130 0 chr4 159228825 159228933 -25059729 + MER94 DNA DNA 13 134 0 283 70 0 0 chr4 159229059 159229102 -25059560 + HY3 scRNA scRNA 59 101 0 207 264 104 40 chr4 159229392 159229517 -25059145 - MIR SINE MIR -11 251 119 1757 163 34 3 chr4 159229874 159230168 -25058494 - AluJo SINE Alu -9 303 1 23 0 0 0 chr4 159230234 159230257 -25058405 + AT_rich Low_complexity Low_complexity 1 23 0 2267 77 0 32 chr4 159230409 159230720 -25057942 - AluSg SINE Alu -9 301 1 296 240 82 10 chr4 159231321 159231419 -25057243 + MIR SINE MIR 104 207 -55 208 313 75 25 chr4 159231872 159231952 -25056710 - MIR SINE MIR -105 103 20 * 267 259 82 24 chr4 159231935 159232020 -25056642 + L2 LINE L2 3219 3308 -5 2268 101 0 0 chr4 159232705 159233001 -25055661 - AluY SINE Alu -15 296 1 315 338 12 0 chr4 159233009 159233089 -25055573 + L3 LINE CR1 33 113 -1464 321 308 54 91 chr4 159233122 159233453 -25055209 - HAL1 LINE L1 -1809 698 380 517 317 233 28 chr4 159233677 159234144 -25054518 + L3 LINE CR1 588 1150 -427 1849 195 0 0 chr4 159234155 159234458 -25054204 - AluSx SINE Alu -8 304 2 316 146 0 18 chr4 159234578 159234633 -25054029 - MER3 DNA MER1_type -155 54 1 383 298 33 22 chr4 159234637 159234818 -25053844 + L3 LINE CR1 1215 1397 -180 1863 156 16 13 chr4 159234922 159235229 -25053433 - AluSx SINE Alu -4 308 1 745 102 8 31 chr4 159235239 159235367 -25053295 - L1MA5 LINE L1 -6 6294 6170 1561 168 3 89 chr4 159235401 159235716 -25052946 - AluJo SINE Alu -24 288 1 1868 129 31 39 chr4 159235840 159236146 -25052516 - AluSx SINE Alu 0 304 1 4703 112 25 8 chr4 159236146 159237461 -25051201 - L1PBa LINE L1 -4752 2111 625 1107 138 15 0 chr4 159237453 159237648 -25051014 - L1PBa LINE L1 -6663 200 3 * 4049 173 51 44 chr4 159237666 159238537 -25050125 + L1MB8 LINE L1 4404 5268 -910 2334 62 0 10 chr4 159238537 159238844 -25049818 + L1PA8 LINE L1 5869 6172 0 4049 173 51 44 chr4 159238844 159238886 -25049776 + L1MB8 LINE L1 5268 5308 -870 2188 108 7 3 chr4 159238886 159239181 -25049481 + AluSg SINE Alu 1 296 -14 4049 173 51 44 chr4 159239181 159239586 -25049076 + L1MB8 LINE L1 5308 5709 -469 2299 128 6 6 chr4 159239586 159239923 -25048739 - MER1B DNA MER1_type 0 337 1 4049 173 51 44 chr4 159239923 159240358 -25048304 + L1MB8 LINE L1 5709 6178 0 1958 155 51 96 chr4 159240381 159240575 -25048087 - MLT1C LTR MaLR 0 467 266 2279 116 0 0 chr4 159240575 159240877 -25047785 - AluSq SINE Alu -11 302 1 1958 155 51 96 chr4 159240877 159241171 -25047491 - MLT1C LTR MaLR -201 266 1 294 279 45 81 chr4 159241585 159241696 -25046966 + MIR SINE MIR 47 153 -109 255 114 0 0 chr4 159242299 159242343 -25046319 + (TTTTA)n Simple_repeat Simple_repeat 1 44 0 2677 13 6 0 chr4 159242343 159242660 -25046002 - L1PA3 LINE L1 -24 6131 5813 24 32 0 0 chr4 159243111 159243142 -25045520 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 159243181 159243202 -25045460 + AT_rich Low_complexity Low_complexity 1 21 0 2492 44 0 3 chr4 159243211 159243508 -25045154 - AluY SINE Alu -15 296 1 1867 158 7 17 chr4 159243554 159243851 -25044811 - AluSx SINE Alu -17 295 2 915 148 22 118 chr4 159244384 159244613 -25044049 + MER20 DNA MER1_type 2 208 -11 229 236 0 18 chr4 159245147 159245202 -25043460 + MER5A DNA MER1_type 124 177 -12 3807 105 30 23 chr4 159245428 159245989 -25042673 - MER61E LTR ERV1 -4 565 1 264 189 0 0 chr4 159246151 159246204 -25042458 - L1ME LINE L1 -307 5814 5762 1330 167 52 99 chr4 159246695 159247019 -25041643 - AluJo SINE Alu -3 309 1 1967 208 68 23 chr4 159247191 159247673 -25040989 - MLT1D LTR MaLR -1 504 1 549 258 0 32 chr4 159247719 159247874 -25040788 - MLT1H LTR MaLR 0 549 400 1944 151 3 0 chr4 159248096 159248388 -25040274 + AluJb SINE Alu 2 294 -18 180 0 0 0 chr4 159248720 159248740 -25039922 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 1910 139 7 7 chr4 159250987 159251268 -25037394 - AluJb SINE Alu -29 283 3 22 0 0 0 chr4 159251270 159251292 -25037370 + AT_rich Low_complexity Low_complexity 1 22 0 303 300 112 29 chr4 159251377 159251654 -25037008 + L2 LINE L2 2314 2613 -701 2306 158 94 7 chr4 159251654 159252110 -25036552 - LTR54 LTR ERV1 0 510 15 896 182 15 25 chr4 159252193 159252391 -25036271 - MER58A DNA MER1_type 0 224 29 561 344 68 63 chr4 159252550 159252975 -25035687 + L2 LINE L2 2837 3263 -9 346 250 0 0 chr4 159253125 159253205 -25035457 + MER116 DNA Mariner 1 80 0 2643 132 24 5 chr4 159253440 159253864 -25034798 + MSTB1 LTR MaLR 1 432 0 668 307 114 29 chr4 159254450 159254792 -25033870 + L2 LINE L2 1805 2175 -1139 258 32 0 0 chr4 159254859 159254890 -25033772 + (CA)n Simple_repeat Simple_repeat 1 31 0 350 210 80 10 chr4 159254911 159255011 -25033651 + MER112 DNA MER1_type 154 260 0 278 254 0 0 chr4 159255011 159255074 -25033588 + L2 LINE L2 2182 2244 -1070 396 264 40 8 chr4 159255075 159255200 -25033462 - Tigger6 DNA MER2_type -17 1580 1452 368 195 130 13 chr4 159255208 159255285 -25033377 - MER58A DNA MER1_type -21 86 1 718 176 0 16 chr4 159255348 159255473 -25033189 - FLAM_A SINE Alu -6 127 5 833 165 78 58 chr4 159255526 159255732 -25032930 - LTR48B LTR ERV1 0 644 435 336 269 59 25 chr4 159255800 159255919 -25032743 - MLT1K LTR MaLR -315 273 151 212 360 70 0 chr4 159256171 159256257 -25032405 - L2 LINE L2 -14 3258 3167 492 266 57 0 chr4 159256428 159256586 -25032076 - L2 LINE L2 -213 3059 2893 245 332 114 50 chr4 159256705 159256925 -25031737 - L2 LINE L2 -528 2786 2553 181 381 19 7 chr4 159257217 159257372 -25031290 + L2 LINE L2 2152 2308 -1006 2172 97 13 24 chr4 159257889 159258187 -25030475 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr4 159258497 159258518 -25030144 + AT_rich Low_complexity Low_complexity 1 21 0 227 291 0 0 chr4 159259090 159259145 -25029517 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 261 223 21 43 chr4 159259145 159259239 -25029423 - L1MC4 LINE L1 -1339 6703 6612 25 65 0 0 chr4 159259354 159259400 -25029262 + AT_rich Low_complexity Low_complexity 1 46 0 1738 179 3 35 chr4 159259484 159259802 -25028860 - AluJo SINE Alu -4 308 1 593 276 112 0 chr4 159260150 159260320 -25028342 + MIR SINE MIR 53 241 -21 1780 129 0 97 chr4 159260473 159260813 -25027849 - AluJb SINE Alu -5 307 1 2105 107 3 45 chr4 159260877 159261185 -25027477 - AluSx SINE Alu -17 295 1 29 0 0 0 chr4 159262284 159262313 -25026349 + AT_rich Low_complexity Low_complexity 1 29 0 411 197 0 0 chr4 159262844 159262915 -25025747 - FLAM SINE Alu -19 124 54 273 246 0 33 chr4 159263999 159264060 -25024602 + MIR SINE MIR 89 147 -61 200 203 16 65 chr4 159264587 159264710 -25023952 + (TTATA)n Simple_repeat Simple_repeat 5 121 0 327 171 43 26 chr4 159264871 159264988 -25023674 + (TATAA)n Simple_repeat Simple_repeat 1 119 0 294 89 69 20 chr4 159265008 159265109 -25023553 + (TA)n Simple_repeat Simple_repeat 2 107 0 465 106 39 44 chr4 159265190 159265370 -25023292 + (TA)n Simple_repeat Simple_repeat 2 180 0 205 305 49 24 chr4 159267357 159267439 -25021223 - L2 LINE L2 -52 3220 3137 752 106 0 0 chr4 159269640 159269744 -25018918 + AluSp SINE Alu 1 104 -209 2111 78 25 0 chr4 159269747 159270030 -25018632 - AluSg SINE Alu -20 290 1 270 342 17 17 chr4 159271146 159271263 -25017399 - L2 LINE L2 -1 3271 3155 478 308 143 11 chr4 159271362 159271544 -25017118 - MIR SINE MIR -34 228 23 986 154 12 0 chr4 159271953 159272115 -25016547 + FRAM SINE Alu 1 164 -2 183 339 18 36 chr4 159272380 159272492 -25016170 - MIR SINE MIR -49 213 104 1472 157 106 0 chr4 159272933 159273188 -25015474 - AluJo SINE Alu -20 292 11 368 225 0 0 chr4 159273253 159273333 -25015329 - MER103 DNA DNA -50 116 37 356 318 123 71 chr4 159277221 159277841 -25010821 + L1M2 LINE L1 446 1097 -5752 213 39 0 0 chr4 159279048 159279074 -25009588 + (T)n Simple_repeat Simple_repeat 1 26 0 301 280 178 17 chr4 159279805 159279923 -25008739 - MER5A DNA MER1_type -7 182 46 879 192 84 0 chr4 159280617 159280784 -25007878 + MER63B DNA MER1_type 6 186 -250 550 258 36 30 chr4 159280794 159280961 -25007701 + MLT1F1 LTR MaLR 27 194 -373 499 245 70 108 chr4 159281003 159281289 -25007373 + MLT1F1 LTR MaLR 177 451 -116 335 190 10 50 chr4 159281288 159281388 -25007274 + MER63B DNA MER1_type 169 264 -171 * 266 339 24 18 chr4 159281390 159281558 -25007104 + L1MB1 LINE L1 674 842 -5937 236 338 0 0 chr4 159281663 159281737 -25006925 + L1MB1 LINE L1 1201 1274 -5495 259 233 67 83 chr4 159281805 159281925 -25006737 + L1MB1 LINE L1 1400 1517 -5252 287 24 71 0 chr4 159281959 159282001 -25006661 + A-rich Low_complexity Low_complexity 1 45 0 2111 226 37 21 chr4 159282033 159282657 -25006005 + L1MB1 LINE L1 1569 2202 -4577 6500 183 47 16 chr4 159282670 159283130 -25005532 + L1MB1 LINE L1 2659 3103 -3767 3055 34 8 5 chr4 159283130 159283513 -25005149 + L1PA4 LINE L1 5767 6150 -5 6500 183 47 16 chr4 159283513 159284004 -25004658 + L1MB1 LINE L1 3103 3577 -3293 2145 123 3 0 chr4 159284004 159284297 -25004365 + AluSq SINE Alu 5 298 -15 6500 183 47 16 chr4 159284297 159287259 -25001403 + L1MB1 LINE L1 3577 6833 -37 2292 99 3 13 chr4 159287259 159287573 -25001089 + AluSx SINE Alu 1 311 -1 6500 183 47 16 chr4 159287573 159287601 -25001061 + L1MB1 LINE L1 6833 6859 -11 547 239 5 82 chr4 159287663 159287847 -25000815 + Charlie1 DNA MER1_type 1464 1633 -1128 825 191 52 29 chr4 159287855 159288065 -25000597 + MER63B DNA MER1_type 221 435 0 182 265 216 29 chr4 159288159 159288261 -25000401 - MER5A DNA MER1_type -5 184 64 186 43 0 0 chr4 159288366 159288389 -25000273 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 378 203 42 112 chr4 159289540 159289683 -24998979 - FLAM_A SINE Alu 0 133 1 1181 169 101 27 chr4 159289759 159290055 -24998607 - MER33 DNA MER1_type 0 324 7 220 315 37 28 chr4 159290475 159290583 -24998079 + MIR SINE MIR 9 117 -145 911 164 12 0 chr4 159290589 159290760 -24997902 - LTR16A LTR ERVL -5 445 273 252 294 100 38 chr4 159290856 159291016 -24997646 + L2 LINE L2 1599 1768 -1546 246 353 0 0 chr4 159291054 159291139 -24997523 - MIR SINE MIR 0 262 178 1496 221 36 70 chr4 159291150 159291593 -24997069 + LTR16A LTR ERVL 13 440 -10 313 232 30 40 chr4 159291613 159291712 -24996950 - MIR SINE MIR -156 106 9 204 253 0 101 chr4 159291754 159291853 -24996809 + L2 LINE L2 1932 2020 -1294 244 316 112 60 chr4 159291935 159292150 -24996512 + L2 LINE L2 3047 3272 0 228 200 0 0 chr4 159293712 159293772 -24994890 + GA-rich Low_complexity Low_complexity 2 61 0 23 0 0 0 chr4 159293999 159294022 -24994640 + AT_rich Low_complexity Low_complexity 1 23 0 958 160 0 29 chr4 159294334 159294509 -24994153 - AluSg/x SINE Alu 0 310 141 1087 133 11 11 chr4 159294897 159295078 -24993584 + AluSq SINE Alu 1 181 -132 4839 50 8 1 chr4 159345079 159345788 -24942874 + L1PA6 LINE L1 5157 5869 -285 3426 136 28 5 chr4 159345824 159346640 -24942022 + L1P5 LINE L1 4957 5791 -363 294 29 0 0 chr4 159346640 159346675 -24941987 + (TA)n Simple_repeat Simple_repeat 1 35 0 250 296 0 0 chr4 159346676 159346764 -24941898 - L1MC4 LINE L1 -1340 6702 6615 240 253 0 63 chr4 159346679 159346774 -24941888 + L1MC4 LINE L1 6614 6702 -1340 * 2550 109 0 5 chr4 159346800 159347175 -24941487 + L1PB3 LINE L1 5782 6154 0 207 0 0 0 chr4 159347567 159347590 -24941072 + (A)n Simple_repeat Simple_repeat 1 23 0 654 125 10 0 chr4 159347691 159347795 -24940867 + AluSg/x SINE Alu 197 301 -9 24 0 0 0 chr4 159348333 159348357 -24940305 + AT_rich Low_complexity Low_complexity 1 24 0 1979 164 0 0 chr4 159348517 159348828 -24939834 + AluJo SINE Alu 1 311 -1 2189 120 7 0 chr4 159349757 159350066 -24938596 + AluSx SINE Alu 1 311 -1 857 228 130 30 chr4 159350437 159350775 -24937887 + L1MC4a LINE L1 5511 5882 -1926 194 274 0 0 chr4 159350928 159350979 -24937683 - MIR3 SINE MIR -3 205 155 366 284 58 21 chr4 159351452 159351609 -24937053 - MIR3 SINE MIR -25 183 21 359 243 257 0 chr4 159351739 159351891 -24936771 - MIR SINE MIR -12 250 60 2107 128 3 20 chr4 159351985 159352291 -24936371 + AluSx SINE Alu 1 301 -11 310 199 27 113 chr4 159352328 159352514 -24936148 - MER113 DNA MER1_type? -351 170 1 334 329 43 19 chr4 159353471 159353632 -24935030 + L2 LINE L2 3105 3269 -44 416 278 68 30 chr4 159354297 159354664 -24933998 + L1ME4a LINE L1 5691 6071 -50 324 313 43 4 chr4 159356868 159357101 -24931561 + L1ME LINE L1 5581 5822 -299 1271 198 90 14 chr4 159357485 159357839 -24930823 + L1ME2 LINE L1 5773 6153 -11 1459 162 25 64 chr4 159357871 159358059 -24930603 - MER2 DNA MER2_type -31 314 143 2263 102 3 10 chr4 159358059 159358364 -24930298 + AluSx SINE Alu 1 303 -9 1459 162 25 64 chr4 159358364 159358502 -24930160 - MER2 DNA MER2_type -202 143 1 536 97 0 0 chr4 159358741 159358813 -24929849 - U4 snRNA snRNA -73 72 1 2759 7 3 0 chr4 159359484 159359789 -24928873 + AluYa5 SINE Alu 1 306 -5 28 79 0 0 chr4 159359883 159359946 -24928716 + AT_rich Low_complexity Low_complexity 1 63 0 219 351 106 0 chr4 159360771 159360865 -24927797 - MIR SINE MIR -109 153 50 2544 51 0 0 chr4 159361254 159361549 -24927113 - AluY SINE Alu -16 295 1 244 274 49 0 chr4 159362702 159362804 -24925858 + MER112 DNA MER1_type 145 251 -9 326 263 177 17 chr4 159363092 159363267 -24925395 + L2 LINE L2 626 828 -2486 317 199 29 155 chr4 159363273 159363431 -24925231 + MLT1H LTR MaLR 417 549 0 2268 275 119 87 chr4 159363457 159364151 -24924511 + L2 LINE L2 1164 1835 -1437 407 234 27 9 chr4 159364151 159364262 -24924400 + MER94 DNA DNA 2 114 -20 2268 275 119 87 chr4 159364262 159365485 -24923177 + L2 LINE L2 1835 3270 -2 2089 133 0 13 chr4 159366162 159366470 -24922192 - AluSx SINE Alu -8 304 1 291 261 0 0 chr4 159366624 159366689 -24921973 - MIR SINE MIR -150 112 48 243 0 0 0 chr4 159366734 159366761 -24921901 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 341 298 121 0 chr4 159368364 159368488 -24920174 + MIR SINE MIR 80 218 -44 207 171 0 0 chr4 159368519 159368554 -24920108 + (CA)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr4 159368554 159368577 -24920085 + AT_rich Low_complexity Low_complexity 1 23 0 2011 149 3 19 chr4 159368595 159368911 -24919751 + AluSx SINE Alu 1 311 -1 336 276 97 22 chr4 159371203 159371388 -24917274 + L1ME LINE L1 5532 5730 -391 1636 175 13 22 chr4 159371825 159372140 -24916522 + AluJb SINE Alu 1 312 0 782 176 0 22 chr4 159374874 159375010 -24913652 + FLAM_A SINE Alu 1 133 0 201 372 90 18 chr4 159375152 159375375 -24913287 + L2 LINE L2 2422 2660 -654 327 324 190 51 chr4 159375428 159375838 -24912824 + L2 LINE L2 2806 3272 0 1981 148 0 0 chr4 159375889 159376222 -24912440 + AluSx SINE Alu 1 333 0 888 201 7 7 chr4 159376382 159376536 -24912126 - FRAM SINE Alu -11 155 2 1193 80 7 0 chr4 159376625 159376776 -24911886 + AluSc SINE Alu 149 300 -9 543 230 77 56 chr4 159377590 159377786 -24910876 + L2 LINE L2 3113 3312 -1 225 0 0 0 chr4 159378486 159378511 -24910151 + (A)n Simple_repeat Simple_repeat 1 25 0 1679 153 6 50 chr4 159378621 159378941 -24909721 - AluJo SINE Alu -6 306 1 2173 70 0 15 chr4 159378941 159379214 -24909448 - AluY SINE Alu -8 303 35 2059 172 39 30 chr4 159379351 159379845 -24908817 + L1ME1 LINE L1 5371 5868 -298 426 166 7 110 chr4 159379853 159379941 -24908721 + L1MB8 LINE L1 6049 6118 -60 1540 181 54 4 chr4 159379941 159380218 -24908444 - AluJb SINE Alu -21 291 1 426 166 7 110 chr4 159380218 159380274 -24908388 + L1MB8 LINE L1 6118 6178 0 670 203 62 47 chr4 159380906 159381098 -24907564 - MIR SINE MIR 0 262 68 1963 156 0 13 chr4 159383188 159383489 -24905173 + AluSx SINE Alu 1 297 -15 546 181 214 28 chr4 159384391 159384573 -24904089 - MIR SINE MIR -38 224 9 34 0 0 0 chr4 159384631 159384665 -24903997 + AT_rich Low_complexity Low_complexity 1 34 0 252 342 98 14 chr4 159384896 159385171 -24903491 - L2 LINE L2 -170 3102 2805 253 328 74 86 chr4 159385968 159386224 -24902438 - L2 LINE L2 -40 3232 2980 1034 142 0 0 chr4 159386467 159386643 -24902019 + L1MA2 LINE L1 6089 6264 -40 26 0 0 0 chr4 159387149 159387175 -24901487 + AT_rich Low_complexity Low_complexity 1 26 0 1546 127 9 5 chr4 159387256 159387476 -24901186 + AluSg/x SINE Alu 81 301 -9 316 284 126 0 chr4 159389105 159389200 -24899462 - MIR3 SINE MIR -15 193 87 443 273 101 64 chr4 159389682 159390252 -24898410 + L2 LINE L2 2650 3220 -52 667 129 80 154 chr4 159390704 159390833 -24897829 - MER33 DNA MER1_type -2261 324 226 795 161 0 0 chr4 159390833 159390951 -24897711 - FLAM_C SINE Alu -15 118 1 667 129 80 154 chr4 159390951 159391107 -24897555 - MER33 DNA MER1_type -2359 226 60 577 293 149 0 chr4 159391961 159392176 -24896486 - MIR SINE MIR -5 257 11 437 206 9 0 chr4 159392365 159392472 -24896190 + L1MB8 LINE L1 6066 6173 -5 1901 282 124 32 chr4 159392643 159393671 -24894991 - L2 LINE L2 0 3313 2192 23 0 0 0 chr4 159395533 159395556 -24893106 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr4 159396551 159396586 -24892076 + AT_rich Low_complexity Low_complexity 1 35 0 298 349 28 0 chr4 159397264 159397373 -24891289 + MIR SINE MIR 22 133 -75 309 363 132 9 chr4 159398109 159398442 -24890220 - L2 LINE L2 -646 2668 2295 238 268 203 16 chr4 159398626 159398749 -24889913 + MIR SINE MIR 51 196 -66 458 230 377 4 chr4 159398991 159399256 -24889406 + L2 LINE L2 2933 3296 -17 181 176 29 0 chr4 159399228 159399262 -24889400 + MIR SINE MIR 223 257 -5 * 208 159 63 63 chr4 159401130 159401193 -24887469 + L2 LINE L2 3210 3272 0 21 57 0 0 chr4 159402704 159402739 -24885923 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 159403653 159403674 -24884988 + GC_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr4 159403730 159403767 -24884895 + GC_rich Low_complexity Low_complexity 1 37 0 249 119 0 0 chr4 159403873 159403915 -24884747 + (CTG)n Simple_repeat Simple_repeat 1 42 0 24 53 0 0 chr4 159403917 159403955 -24884707 + GC_rich Low_complexity Low_complexity 1 38 0 334 286 172 0 chr4 159404421 159404647 -24884015 - L2 LINE L2 -174 3139 2875 750 185 53 0 chr4 159404647 159404798 -24883864 + MER5A DNA MER1_type 3 161 -28 330 250 149 37 chr4 159404830 159405018 -24883644 - L2 LINE L2 -437 2877 2669 2500 56 0 16 chr4 159405039 159405344 -24883318 + AluSp SINE Alu 1 300 -13 2175 68 32 7 chr4 159405464 159405743 -24882919 + AluSx SINE Alu 1 286 -26 243 314 157 17 chr4 159405787 159405959 -24882703 - L2 LINE L2 -613 2701 2506 3421 225 10 4 chr4 159406074 159406888 -24881774 - L1 LINE L1 -929 5217 4399 2759 128 14 80 chr4 159406980 159407381 -24881281 - MER84 LTR ERVI -30 477 51 2338 94 0 0 chr4 159407381 159407687 -24880975 + AluSq SINE Alu 1 306 0 2759 128 14 80 chr4 159407687 159407749 -24880913 - MER84 LTR ERVI -456 51 47 1854 126 54 0 chr4 159407749 159408027 -24880635 - AluSg SINE Alu -17 293 1 2759 128 14 80 chr4 159408027 159408071 -24880591 - MER84 LTR ERVI -460 47 2 424 143 39 13 chr4 159408071 159408141 -24880521 - MER84 LTR ERVI -433 74 3 333 259 37 44 chr4 159408268 159408403 -24880259 - L1MC4 LINE L1 -1125 6917 6784 27 62 0 0 chr4 159409656 159409704 -24878958 + AT_rich Low_complexity Low_complexity 1 48 0 1743 118 0 0 chr4 159409718 159409946 -24878716 - AluSq SINE Alu -85 228 1 190 216 0 0 chr4 159409964 159410001 -24878661 - L2 LINE L2 -90 3223 3187 274 262 204 23 chr4 159410005 159410177 -24878485 + L1MC/D LINE L1 5614 5816 -1992 21 0 0 0 chr4 159410225 159410246 -24878416 + AT_rich Low_complexity Low_complexity 1 21 0 2221 90 0 53 chr4 159411056 159411378 -24877284 + AluSg SINE Alu 1 305 -5 311 273 92 14 chr4 159411487 159411654 -24877008 - MIR SINE MIR -50 212 36 2279 96 0 16 chr4 159412114 159412428 -24876234 + AluSx SINE Alu 1 309 -3 2315 108 0 3 chr4 159413021 159413328 -24875334 + AluSx SINE Alu 2 307 -5 1837 145 11 0 chr4 159413342 159413625 -24875037 + AluJo SINE Alu 1 286 -26 206 289 0 0 chr4 159413782 159413827 -24874835 + polypurine Low_complexity Low_complexity 4 48 0 3535 170 8 35 chr4 159414033 159414527 -24874135 + L1P LINE L1 4471 4942 -1204 1630 21 0 11 chr4 159414527 159414718 -24873944 + L1PA4 LINE L1 5967 6155 0 3535 170 8 35 chr4 159414718 159414940 -24873722 + L1P LINE L1 4942 5168 -978 6827 81 4 1 chr4 159414940 159416112 -24872550 + L1PA13 LINE L1 4986 6161 -2 21 36 0 0 chr4 159416271 159416299 -24872363 + AT_rich Low_complexity Low_complexity 1 28 0 2196 40 44 7 chr4 159416310 159416606 -24872056 + AluY SINE Alu 1 306 0 604 218 8 8 chr4 159416608 159416741 -24871921 + FLAM_A SINE Alu 1 133 0 2311 112 0 0 chr4 159416750 159417054 -24871608 + AluSq SINE Alu 1 304 -9 533 301 95 20 chr4 159417380 159417623 -24871039 + MIR SINE MIR 3 262 0 2020 142 0 10 chr4 159417637 159417940 -24870722 - AluSx SINE Alu -11 301 2 396 0 0 0 chr4 159418908 159418952 -24869710 + (TC)n Simple_repeat Simple_repeat 1 44 0 420 133 48 133 chr4 159419405 159419570 -24869092 + L1MB7 LINE L1 6034 6184 0 2250 94 4 0 chr4 159419824 159420100 -24868562 + AluSp SINE Alu 1 277 -36 303 49 0 0 chr4 159420105 159420146 -24868516 + (CAAAA)n Simple_repeat Simple_repeat 1 41 0 2249 98 6 16 chr4 159420902 159421217 -24867445 + AluSx SINE Alu 1 312 0 512 203 42 28 chr4 159421383 159421526 -24867136 - MIR SINE MIR 0 262 118 1030 278 75 77 chr4 159421823 159421963 -24866699 - L2 LINE L2 -518 2796 2657 1920 127 44 0 chr4 159421963 159422238 -24866424 + AluSg SINE Alu 6 292 -18 1030 278 75 77 chr4 159422238 159422364 -24866298 - L2 LINE L2 -657 2657 2532 2232 114 3 0 chr4 159422364 159422663 -24865999 - AluSx SINE Alu -10 302 3 1030 278 75 77 chr4 159422663 159422914 -24865748 - L2 LINE L2 -782 2532 2279 209 176 39 0 chr4 159422932 159422983 -24865679 + T-rich Low_complexity Low_complexity 2 54 0 743 196 0 0 chr4 159423241 159423374 -24865288 + FLAM_C SINE Alu 1 133 0 2000 145 0 16 chr4 159423509 159423812 -24864850 - AluSx SINE Alu -13 299 2 2100 116 13 20 chr4 159423891 159424192 -24864470 - AluSx SINE Alu -13 299 1 1959 154 3 3 chr4 159424426 159424719 -24863943 - AluSx SINE Alu -19 293 1 312 343 7 22 chr4 159425021 159425158 -24863504 - MIR SINE MIR -59 203 69 1600 239 79 99 chr4 159425463 159425630 -24863032 - L1ME LINE L1 -5257 813 644 2008 158 0 3 chr4 159425630 159425934 -24862728 + AluSx SINE Alu 1 303 -9 1600 239 79 99 chr4 159425934 159426560 -24862102 - L1ME LINE L1 -5426 644 36 390 178 168 0 chr4 159426662 159426769 -24861893 - MLT1H LTR MaLR -4 545 421 461 276 127 32 chr4 159427014 159427123 -24861539 + L2 LINE L2 1570 1667 -1647 2120 114 41 0 chr4 159427123 159427413 -24861249 - AluSq SINE Alu -11 302 1 461 276 127 32 chr4 159427413 159427712 -24860950 + L2 LINE L2 1667 2017 -1297 859 145 7 22 chr4 159427791 159427929 -24860733 - AluJo SINE Alu -176 136 1 538 290 102 43 chr4 159427946 159428023 -24860639 + L2 LINE L2 2115 2186 -1128 2265 106 3 7 chr4 159428023 159428324 -24860338 - AluSq SINE Alu -13 300 1 538 290 102 43 chr4 159428324 159428833 -24859829 + L2 LINE L2 2186 2663 -651 2100 138 0 7 chr4 159428833 159429131 -24859531 + AluSx SINE Alu 1 296 -16 180 0 0 0 chr4 159429135 159429155 -24859507 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 538 290 102 43 chr4 159429155 159429265 -24859397 + L2 LINE L2 2665 2859 -455 372 237 178 8 chr4 159429368 159429486 -24859176 + MIR SINE MIR 34 171 -91 1971 145 0 32 chr4 159429502 159429812 -24858850 + AluSx SINE Alu 3 302 -10 1317 215 41 0 chr4 159429812 159430082 -24858580 + MLT1B LTR MaLR 110 390 0 2120 124 3 3 chr4 159431219 159431517 -24857145 - AluSx SINE Alu -6 306 9 1418 188 45 39 chr4 159432501 159432809 -24855853 + AluJo SINE Alu 1 310 -2 330 214 48 0 chr4 159433537 159433621 -24855041 - MIR SINE MIR -73 189 102 633 174 0 114 chr4 159433855 159434004 -24854658 - FLAM_C SINE Alu 0 133 2 1590 197 3 11 chr4 159434619 159434903 -24853759 - AluJo SINE Alu -30 282 1 2165 123 3 0 chr4 159435319 159435612 -24853050 - AluSq SINE Alu -19 294 1 2132 215 34 62 chr4 159435649 159436216 -24852446 - MLT2B3 LTR ERVL -3 551 1 3728 100 7 40 chr4 159436216 159436518 -24852144 - HERVL-B3 LTR ERVL 0 5654 5377 2108 117 3 0 chr4 159436518 159436808 -24851854 + AluSp SINE Alu 1 291 -22 3728 100 7 40 chr4 159436808 159437056 -24851606 - HERVL-B3 LTR ERVL -277 5377 5122 4446 131 114 77 chr4 159437056 159438567 -24850095 + pTR5 LTR ERV1 65 2438 0 2422 91 2 98 chr4 159438567 159438963 -24849699 - HERVL-B3 LTR ERVL -529 5125 4768 2089 142 0 7 chr4 159439253 159439548 -24849114 + AluSx SINE Alu 1 293 -19 198 71 0 0 chr4 159439591 159439619 -24849043 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 22 35 0 0 chr4 159439657 159439686 -24848976 + AT_rich Low_complexity Low_complexity 1 29 0 1281 197 143 4 chr4 159440019 159440278 -24848384 + AluJb SINE Alu 1 295 -7 261 180 0 0 chr4 159440278 159440328 -24848334 + (TA)n Simple_repeat Simple_repeat 1 50 0 24 0 0 0 chr4 159440486 159440510 -24848152 + AT_rich Low_complexity Low_complexity 1 24 0 1977 128 7 0 chr4 159440782 159441055 -24847607 - AluSx SINE Alu -37 275 1 37 39 0 0 chr4 159441129 159441180 -24847482 + AT_rich Low_complexity Low_complexity 1 51 0 1409 153 26 109 chr4 159441185 159441498 -24847164 - AluJo SINE Alu -25 287 1 1629 182 21 123 chr4 159441498 159441804 -24846858 - L1M4 LINE L1 -985 5161 4926 2145 133 6 16 chr4 159441804 159442119 -24846543 - AluSx SINE Alu 0 312 1 1629 182 21 123 chr4 159442119 159442323 -24846339 - L1M4 LINE L1 -1220 4926 4703 447 172 9 189 chr4 159442317 159442398 -24846264 - L1M4 LINE L1 -1827 4319 4304 * 1787 174 3 31 chr4 159442398 159442719 -24845943 - AluSx SINE Alu 0 312 1 447 172 9 189 chr4 159442719 159442864 -24845798 - L1M4 LINE L1 -1842 4304 4134 408 285 95 23 chr4 159442916 159443137 -24845525 - L1MC4a LINE L1 -1856 5952 5716 1077 138 15 26 chr4 159443315 159443510 -24845152 - AluJo SINE Alu 0 312 120 2450 100 3 0 chr4 159443556 159443867 -24844795 + AluSx SINE Alu 1 312 0 1854 136 21 7 chr4 159443949 159444250 -24844412 + AluSx SINE Alu 1 305 0 690 184 0 0 chr4 159445521 159445657 -24843005 + L1MA7 LINE L1 6155 6290 -1 890 147 0 15 chr4 159445661 159445797 -24842865 + AluJo SINE Alu 1 134 -178 431 85 0 0 chr4 159446109 159446168 -24842494 - MER39 LTR ERV1 -40 667 609 1119 47 0 0 chr4 159446169 159446317 -24842345 - AluSg/x SINE Alu 0 300 153 369 188 146 21 chr4 159446406 159446502 -24842160 - MER39 LTR ERV1 -587 120 13 1513 148 0 0 chr4 159446502 159446725 -24841937 - AluSg/x SINE Alu -6 306 84 1798 113 70 0 chr4 159446755 159447011 -24841651 - AluSx SINE Alu -38 274 1 23 0 0 0 chr4 159447222 159447245 -24841417 + AT_rich Low_complexity Low_complexity 1 23 0 773 159 56 0 chr4 159447250 159447376 -24841286 + FLAM_C SINE Alu 1 133 0 2184 113 0 0 chr4 159447515 159447832 -24840830 + AluSq SINE Alu 1 317 0 844 245 0 5 chr4 159447859 159448051 -24840611 - AluJo SINE Alu -121 191 1 208 303 91 10 chr4 159448059 159448158 -24840504 - MIR SINE MIR -150 112 6 1529 202 0 23 chr4 159448179 159448486 -24840176 + AluJo SINE Alu 1 300 -12 714 191 0 0 chr4 159448568 159448713 -24839949 + FLAM_A SINE Alu 1 145 0 640 264 69 55 chr4 159448719 159448926 -24839736 + L1MC4 LINE L1 7689 7905 -137 2428 56 7 13 chr4 159448926 159449231 -24839431 + AluY SINE Alu 1 303 -8 640 264 69 55 chr4 159449231 159449371 -24839291 + L1MC4 LINE L1 7905 8041 -1 433 162 0 0 chr4 159449428 159449502 -24839160 + FLAM_C SINE Alu 70 143 0 1812 99 76 0 chr4 159449627 159449889 -24838773 + AluSx SINE Alu 1 282 -30 693 199 7 20 chr4 159450068 159450219 -24838443 + FRAM SINE Alu 4 152 -14 198 0 0 0 chr4 159451443 159451465 -24837197 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 2084 92 20 24 chr4 159452163 159452458 -24836204 + AluSq SINE Alu 11 304 -9 286 174 58 35 chr4 159452630 159452716 -24835946 - LTR67 LTR ERVL 0 557 470 2142 96 53 0 chr4 159452827 159453109 -24835553 - AluSp SINE Alu -16 297 1 2184 108 0 10 chr4 159453882 159454197 -24834465 + AluSq SINE Alu 1 312 0 3284 209 91 42 chr4 159454423 159455126 -24833536 + L1MEc LINE L1 36 802 -5594 2460 88 3 0 chr4 159455126 159455434 -24833228 + AluY SINE Alu 1 309 -2 3284 209 91 42 chr4 159455434 159455704 -24832958 + L1MEc LINE L1 802 1057 -5339 1800 153 0 24 chr4 159455903 159456191 -24832471 + AluJb SINE Alu 1 281 -31 198 0 0 0 chr4 159456194 159456216 -24832446 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 2213 133 10 0 chr4 159456225 159456534 -24832128 + AluSx SINE Alu 1 312 0 1812 175 59 89 chr4 159456615 159457134 -24831528 - MLT2B3 LTR ERVL -8 546 1 1075 197 47 100 chr4 159457378 159457677 -24830985 - MLT1A1 LTR MaLR 0 365 83 632 161 13 97 chr4 159457754 159457909 -24830753 + FLAM_C SINE Alu 2 143 0 785 272 50 8 chr4 159457923 159458162 -24830500 - MIR SINE MIR 0 262 14 216 288 91 0 chr4 159458289 159458355 -24830307 - L2 LINE L2 0 3272 3201 2265 119 3 0 chr4 159458715 159459026 -24829636 + AluSx SINE Alu 1 312 0 397 140 11 28 chr4 159459326 159459410 -24829252 - L1MA9 LINE L1 -5 6184 6097 1150 219 9 4 chr4 159459541 159459774 -24828888 - AluJo SINE Alu -78 234 1 1913 219 22 75 chr4 159459775 159460120 -24828542 - MER68 LTR ERV1 -81 481 170 2353 115 3 0 chr4 159460120 159460432 -24828230 - AluSq SINE Alu 0 313 1 1913 219 22 75 chr4 159460432 159460594 -24828068 - MER68 LTR ERV1 -392 170 1 2025 142 20 0 chr4 159460889 159461185 -24827477 - AluSx SINE Alu -10 302 1 193 189 0 0 chr4 159461200 159461237 -24827425 + L2 LINE L2 2222 2258 -1056 982 426 23 19 chr4 159461628 159461938 -24826724 + AluJo SINE Alu 1 311 -1 811 145 0 0 chr4 159461947 159462064 -24826598 + FLAM_C SINE Alu 1 117 -26 36 0 0 0 chr4 159462069 159462105 -24826557 + AT_rich Low_complexity Low_complexity 1 36 0 2124 136 7 3 chr4 159462303 159462613 -24826049 + AluSx SINE Alu 1 311 -1 349 286 160 22 chr4 159462634 159462903 -24825759 + L1M4 LINE L1 4273 4578 -1568 25 0 0 0 chr4 159462933 159462958 -24825704 + AT_rich Low_complexity Low_complexity 1 25 0 2285 102 7 0 chr4 159463064 159463369 -24825293 + AluSg SINE Alu 1 307 -3 3732 70 4 2 chr4 159463654 159464139 -24824523 - L1PA10 LINE L1 -9 6159 5674 673 209 0 0 chr4 159464139 159464254 -24824408 - AluJb SINE Alu -196 116 2 2249 112 0 3 chr4 159464494 159464798 -24823864 + AluSq SINE Alu 1 303 -10 1195 178 194 4 chr4 159465172 159465425 -24823237 + AluJo SINE Alu 1 301 -1 227 212 45 23 chr4 159465514 159465557 -24823105 + (TA)n Simple_repeat Simple_repeat 2 43 -93 1835 120 58 4 chr4 159465557 159465831 -24822831 + AluSq SINE Alu 1 289 -24 227 212 45 23 chr4 159465831 159465919 -24822743 + (TA)n Simple_repeat Simple_repeat 43 136 0 609 202 90 40 chr4 159465956 159466179 -24822483 - L1MC4 LINE L1 -647 7395 7162 2124 4 0 4 chr4 159466282 159466511 -24822151 + AluYb8 SINE Alu 1 228 -90 666 220 67 153 chr4 159466616 159467333 -24821329 + L1MCa LINE L1 843 1486 -4940 1245 221 104 22 chr4 159467333 159467650 -24821012 - MER7A DNA MER2_type -2 344 4 666 220 67 153 chr4 159467650 159467727 -24820935 + L1MCa LINE L1 1486 1568 -4858 411 78 31 0 chr4 159467739 159467803 -24820859 - Alu SINE Alu -8 304 239 619 66 0 0 chr4 159467903 159467979 -24820683 - AluS SINE Alu -212 101 26 728 181 147 57 chr4 159468120 159468385 -24820277 + MLT1A1 LTR MaLR 73 361 -4 450 198 12 0 chr4 159468384 159468465 -24820197 + MER77 LTR ERV1 518 599 -6 * 2033 122 7 10 chr4 159468501 159468796 -24819866 + AluSx SINE Alu 1 294 -18 2430 207 9 20 chr4 159468987 159469523 -24819139 - L1MB1 LINE L1 -12 6156 5627 1246 138 0 6 chr4 159469623 159469797 -24818865 - AluSg SINE Alu -137 173 1 2322 104 0 0 chr4 159469877 159470175 -24818487 - AluSx SINE Alu -14 298 1 1108 109 0 7 chr4 159470302 159470449 -24818213 + AluSq/x SINE Alu 1 146 -167 580 189 0 0 chr4 159470569 159470664 -24817998 + FLAM_A SINE Alu 33 127 -15 2441 76 7 0 chr4 159470669 159470970 -24817692 + AluSp SINE Alu 1 303 -10 202 232 43 58 chr4 159470981 159471050 -24817612 - L2 LINE L2 -1304 2010 1943 2198 76 33 40 chr4 159471290 159471591 -24817071 + AluSp SINE Alu 1 299 -14 279 273 88 28 chr4 159471591 159471840 -24816822 + L1MC5 LINE L1 7396 7659 -302 22 35 0 0 chr4 159472173 159472202 -24816460 + AT_rich Low_complexity Low_complexity 1 29 0 209 207 35 35 chr4 159472219 159472335 -24816327 + (TA)n Simple_repeat Simple_repeat 2 117 0 652 200 15 0 chr4 159472624 159472754 -24815908 - FLAM_C SINE Alu 0 133 2 21 0 0 0 chr4 159472765 159472786 -24815876 + AT_rich Low_complexity Low_complexity 1 21 0 2557 50 7 0 chr4 159473235 159473536 -24815126 + AluY SINE Alu 1 303 -8 1655 235 66 22 chr4 159473677 159474174 -24814488 + L1MB7 LINE L1 5546 6064 -120 2022 51 0 43 chr4 159474174 159474288 -24814374 + AluY SINE Alu 2 119 -192 2594 58 3 0 chr4 159474288 159474597 -24814065 + AluSp SINE Alu 1 310 -3 2022 51 0 43 chr4 159474597 159474738 -24813924 + AluY SINE Alu 119 246 -65 1428 91 18 50 chr4 159474851 159475071 -24813591 + AluSg/x SINE Alu 89 301 -11 414 288 111 7 chr4 159475473 159475626 -24813036 + MIR SINE MIR 94 262 0 248 125 25 0 chr4 159475650 159475690 -24812972 + L2 LINE L2 3241 3281 -32 1752 130 20 27 chr4 159476258 159476557 -24812105 - AluJb SINE Alu -15 297 1 2401 78 0 0 chr4 159476913 159477209 -24811453 + AluSx SINE Alu 1 296 -16 518 105 439 0 chr4 159477676 159477790 -24810872 - AluJb SINE Alu -9 303 140 2941 79 11 57 chr4 159477890 159477953 -24810709 + L1PA8 LINE L1 5723 5787 -385 2334 101 0 0 chr4 159477953 159478259 -24810403 + AluSq SINE Alu 1 306 -7 2941 79 11 57 chr4 159478259 159478666 -24809996 + L1PA8 LINE L1 5787 6171 -1 2022 134 3 3 chr4 159478676 159479009 -24809653 + AluSx SINE Alu 1 333 0 2241 114 0 10 chr4 159479199 159479506 -24809156 + AluSx SINE Alu 1 304 -8 242 259 69 0 chr4 159479517 159479575 -24809087 + L2 LINE L2 1845 1906 -1408 1095 108 0 7 chr4 159479804 159479952 -24808710 - AluSq/x SINE Alu -165 147 1 2148 237 161 65 chr4 159479954 159480320 -24808342 - L2 LINE L2 -280 3033 2704 1990 120 62 3 chr4 159480320 159480612 -24808050 + AluSg SINE Alu 1 309 -1 2148 237 161 65 chr4 159480612 159480632 -24808030 - L2 LINE L2 -609 2704 2687 2225 119 0 6 chr4 159480632 159480943 -24807719 + AluSx SINE Alu 1 309 -3 2148 237 161 65 chr4 159480943 159481491 -24807171 - L2 LINE L2 -626 2687 1962 4114 165 39 64 chr4 159481491 159482481 -24806181 + LTR5 LTR ERVK 1 966 -3 2148 237 161 65 chr4 159482481 159482640 -24806022 - L2 LINE L2 -1351 1962 1820 1372 210 48 75 chr4 159483255 159483401 -24805261 - L1MEc LINE L1 -2925 3501 3353 2519 69 3 0 chr4 159483401 159483705 -24804957 - AluY SINE Alu -6 305 1 1372 210 48 75 chr4 159483705 159484007 -24804655 - L1MEc LINE L1 -3073 3353 3068 2232 109 24 0 chr4 159484007 159484300 -24804362 - AluSp SINE Alu -9 304 5 1372 210 48 75 chr4 159484300 159484413 -24804249 - L1MEc LINE L1 -3358 3068 2954 500 244 0 9 chr4 159484414 159484529 -24804133 - FLAM_C SINE Alu -4 139 26 651 229 83 0 chr4 159484529 159484673 -24803989 - FAM SINE Alu -19 156 1 607 270 61 42 chr4 159484673 159485215 -24803447 - L1MEc LINE L1 -4237 2370 1686 1069 40 0 8 chr4 159485234 159485359 -24803303 + AluY SINE Alu 1 124 -187 243 0 0 0 chr4 159485359 159485386 -24803276 + (CA)n Simple_repeat Simple_repeat 2 28 0 1263 147 5 5 chr4 159485487 159485684 -24802978 + AluSg/x SINE Alu 104 300 -9 2062 112 45 0 chr4 159485821 159486107 -24802555 - AluY SINE Alu -12 299 1 692 272 127 15 chr4 159486166 159486907 -24801755 + HAL1 LINE L1 1550 2398 -109 1987 138 0 43 chr4 159487005 159487331 -24801331 + AluSx SINE Alu 1 312 0 554 258 141 4 chr4 159487339 159487595 -24801067 + L1M4 LINE L1 4177 4467 -1679 2597 55 0 0 chr4 159488109 159488419 -24800243 + AluY SINE Alu 1 310 -1 1901 104 7 44 chr4 159488442 159488739 -24799923 + AluSx SINE Alu 11 296 -16 745 164 0 0 chr4 159488753 159488875 -24799787 - FLAM_C SINE Alu -20 123 2 209 300 62 12 chr4 159489963 159490043 -24798619 - MIR SINE MIR -76 186 103 583 176 209 7 chr4 159490295 159490448 -24798214 + MER5A DNA MER1_type 5 188 -1 893 270 105 53 chr4 159491607 159492226 -24796436 - HAL1 LINE L1 -190 2317 1667 320 236 38 83 chr4 159492288 159492445 -24796217 + L1MCc LINE L1 814 963 -5460 569 246 12 54 chr4 159492473 159492614 -24796048 + L1MCc LINE L1 1117 1251 -5172 1957 161 58 58 chr4 159492614 159493014 -24795648 + MLT1C LTR MaLR 1 403 -64 1976 143 0 38 chr4 159493014 159493328 -24795334 + AluSg SINE Alu 1 302 -8 1957 161 58 58 chr4 159493328 159493394 -24795268 + MLT1C LTR MaLR 402 467 0 569 246 12 54 chr4 159493394 159493419 -24795243 + L1MCc LINE L1 1251 1276 -5147 1922 169 0 0 chr4 159493419 159493709 -24794953 + AluSx SINE Alu 1 290 -22 569 235 0 23 chr4 159494117 159494249 -24794413 + FLAM_C SINE Alu 3 131 -12 2063 102 0 4 chr4 159494267 159494532 -24794130 + AluSx SINE Alu 1 264 -48 194 0 0 37 chr4 159494562 159494589 -24794073 + (GAAAA)n Simple_repeat Simple_repeat 2 27 0 304 248 78 17 chr4 159496770 159496904 -24791758 + L1MC4 LINE L1 7098 7319 -569 335 247 62 0 chr4 159496913 159496994 -24791668 + L1MC4a LINE L1 7311 7396 -412 2202 100 23 7 chr4 159497209 159497508 -24791154 + AluSq SINE Alu 1 304 -9 189 111 0 56 chr4 159497547 159497601 -24791061 + (TA)n Simple_repeat Simple_repeat 2 52 0 1639 100 165 8 chr4 159497640 159497901 -24790761 + AluSg1 SINE Alu 5 306 -3 342 182 0 0 chr4 159497904 159497970 -24790692 + (TA)n Simple_repeat Simple_repeat 1 66 0 231 279 156 26 chr4 159498283 159498437 -24790225 - L1MC4 LINE L1 -40 8002 7829 1489 153 3 123 chr4 159498555 159498723 -24789939 + AluJb SINE Alu 1 111 -191 1860 144 10 16 chr4 159498723 159499028 -24789634 + AluSq SINE Alu 1 303 -10 1489 153 3 123 chr4 159499028 159499193 -24789469 + AluJb SINE Alu 111 294 -8 798 237 6 24 chr4 159499196 159499365 -24789297 + FRAM SINE Alu 1 166 0 685 194 0 43 chr4 159499379 159499518 -24789144 + FLAM_C SINE Alu 1 133 0 420 111 0 0 chr4 159499526 159499589 -24789073 + (TA)n Simple_repeat Simple_repeat 2 64 0 351 183 17 0 chr4 159499976 159500036 -24788626 - MER77 LTR ERV1 -133 472 412 1268 277 22 16 chr4 159500482 159500850 -24787812 + MLT1A2 LTR MaLR 5 374 0 7491 71 3 2 chr4 159501625 159502593 -24786069 + LTR5 LTR ERVK 1 969 0 1915 140 3 16 chr4 159503099 159503236 -24785426 + AluSq SINE Alu 1 138 -175 2162 102 3 0 chr4 159503236 159503531 -24785131 + AluSp SINE Alu 3 298 -15 1915 140 3 16 chr4 159503531 159503708 -24784954 + AluSq SINE Alu 138 311 -2 1574 147 55 4 chr4 159503712 159503984 -24784678 + AluSx SINE Alu 1 286 -26 1720 123 31 38 chr4 159504131 159504448 -24784214 - L1MA5A LINE L1 -17 6280 5966 9794 26 6 152 chr4 159504451 159506007 -24782655 - SVA Other Other 0 1386 57 192 40 0 0 chr4 159506007 159506032 -24782630 + (GGGAGA)n Simple_repeat Simple_repeat 1 25 0 636 171 93 0 chr4 159506247 159506376 -24782286 + LTR52 LTR ERVL 3 143 -278 1828 132 35 0 chr4 159506661 159506949 -24781713 + AluSx SINE Alu 1 298 -14 1315 217 57 42 chr4 159506949 159507332 -24781330 + LTR52 LTR ERVL 13 401 -20 1653 153 0 52 chr4 159507476 159507659 -24781003 - AluJb SINE Alu 0 312 155 2458 64 0 10 chr4 159507659 159507970 -24780692 - AluY SINE Alu -3 308 1 1653 153 0 52 chr4 159507970 159508116 -24780546 - AluJb SINE Alu -157 155 3 421 214 102 0 chr4 159508702 159508800 -24779862 + Tigger7 DNA MER2_type 24 131 -602 966 120 0 0 chr4 159508815 159508948 -24779714 - AluSq/x SINE Alu -180 133 1 1805 213 51 34 chr4 159508958 159509414 -24779248 + Tigger7 DNA MER2_type 128 575 -2012 2046 104 23 13 chr4 159509414 159509723 -24778939 - AluSx SINE Alu 0 312 1 1805 213 51 34 chr4 159509723 159509842 -24778820 + Tigger7 DNA MER2_type 575 2587 0 2049 58 4 40 chr4 159510588 159510888 -24777774 + AluSp SINE Alu 20 309 0 568 237 0 0 chr4 159510958 159511072 -24777590 + FLAM_A SINE Alu 2 115 -18 2072 99 0 3 chr4 159511212 159511518 -24777144 + AluSx SINE Alu 1 305 0 383 320 68 31 chr4 159511522 159511780 -24776882 - L2 LINE L2 -285 3028 2764 2098 58 3 96 chr4 159511890 159512233 -24776429 + AluY SINE Alu 1 311 0 230 71 0 0 chr4 159512554 159512596 -24776066 + Alu SINE Alu 260 301 -2 670 176 24 16 chr4 159512608 159512733 -24775929 + FLAM_C SINE Alu 3 128 -5 313 275 33 0 chr4 159512744 159512835 -24775827 + MIR SINE MIR 45 138 -124 1555 164 3 29 chr4 159513183 159513313 -24775349 + AluSx SINE Alu 4 136 -176 2136 94 7 7 chr4 159513313 159513611 -24775051 + AluSc SINE Alu 1 298 -11 1555 164 3 29 chr4 159513611 159513790 -24774872 + AluSx SINE Alu 136 305 -7 1312 110 10 10 chr4 159514310 159514536 -24774126 + AluSg/x SINE Alu 84 309 0 411 323 31 6 chr4 159514569 159514730 -24773932 + L2 LINE L2 2376 2540 -774 1979 108 27 7 chr4 159515400 159515696 -24772966 + AluSx SINE Alu 1 302 -10 21 57 0 0 chr4 159515736 159515771 -24772891 + AT_rich Low_complexity Low_complexity 1 35 0 195 300 20 30 chr4 159515827 159515927 -24772735 + L2 LINE L2 2150 2248 -1066 308 301 1 23 chr4 159515963 159516063 -24772599 + MIR SINE MIR 52 150 -58 477 108 12 48 chr4 159516285 159516368 -24772294 - FLAM SINE Alu -11 132 53 4301 65 6 0 chr4 159516378 159516915 -24771747 - MER41A LTR ERV1 -13 541 2 408 190 9 60 chr4 159516915 159517057 -24771605 - AluJ/FLAM SINE Alu -243 59 1 420 189 78 0 chr4 159517415 159517505 -24771157 + LTR40a LTR ERVL 4 100 -419 233 143 24 0 chr4 159517521 159517563 -24771099 + L1MC1 LINE L1 5892 5934 -410 1646 209 46 8 chr4 159518140 159518533 -24770129 + L1MC1 LINE L1 5925 6332 -1 2422 38 0 0 chr4 159518557 159518850 -24769812 - AluY SINE Alu -18 293 1 532 259 14 28 chr4 159518852 159518995 -24769667 - L1MCa LINE L1 -5958 468 328 790 132 73 7 chr4 159519234 159519370 -24769292 - AluJb SINE Alu -166 146 2 56 48 0 0 chr4 159520240 159520324 -24768338 + AT_rich Low_complexity Low_complexity 1 84 0 225 132 0 0 chr4 159520328 159520366 -24768296 + (TA)n Simple_repeat Simple_repeat 2 39 0 2391 56 0 3 chr4 159521007 159521311 -24767351 + AluY SINE Alu 1 303 -8 32 0 0 0 chr4 159521398 159521430 -24767232 + AT_rich Low_complexity Low_complexity 1 32 0 1436 60 0 11 chr4 159522586 159522768 -24765894 - AluY SINE Alu -131 180 1 1357 158 91 0 chr4 159522769 159523010 -24765652 - MER39 LTR ERV1 -444 263 1 282 148 295 0 chr4 159523012 159523073 -24765589 + MER21B LTR ERV1 18 96 -767 2347 88 3 0 chr4 159523075 159523383 -24765279 + AluSp SINE Alu 1 309 -4 1014 134 0 19 chr4 159523384 159523541 -24765121 + AluSc SINE Alu 140 293 -16 1284 201 52 141 chr4 159523573 159523768 -24764894 + MER21B LTR ERV1 356 567 -296 1969 127 3 23 chr4 159523768 159524075 -24764587 + AluSx SINE Alu 1 301 -11 1284 201 52 141 chr4 159524075 159524129 -24764533 + MER21B LTR ERV1 567 624 -239 2250 65 0 10 chr4 159524129 159524423 -24764239 + AluY SINE Alu 1 291 -20 1284 201 52 141 chr4 159524423 159524674 -24763988 + MER21B LTR ERV1 624 812 -51 480 228 30 132 chr4 159525140 159525255 -24763407 + MIR SINE MIR 76 164 -98 2215 122 0 0 chr4 159525255 159525567 -24763095 - AluSx SINE Alu 0 312 1 480 228 30 132 chr4 159525567 159525648 -24763014 + MIR SINE MIR 164 252 -10 484 139 0 131 chr4 159525937 159526074 -24762588 + FAM SINE Alu 67 185 0 194 189 0 0 chr4 159526305 159526342 -24762320 + MIR SINE MIR 222 258 -4 185 243 262 10 chr4 159526827 159526930 -24761732 - MIR SINE MIR -3 259 131 978 171 1 17 chr4 159529253 159529497 -24759165 + AluJb SINE Alu 85 302 -10 1815 115 29 32 chr4 159529830 159530142 -24758520 + AluSx SINE Alu 1 311 -1 689 187 37 15 chr4 159530301 159530435 -24758227 - AluJo SINE Alu -175 137 1 2290 89 0 6 chr4 159530746 159531060 -24757602 + AluSx SINE Alu 1 312 0 542 224 12 73 chr4 159531165 159531330 -24757332 - MER77 LTR ERV1 -446 159 5 578 161 214 0 chr4 159531376 159531488 -24757174 - AluJo SINE Alu -176 136 1 1241 119 32 55 chr4 159531521 159531740 -24756922 + AluSg/x SINE Alu 85 298 -14 718 157 9 0 chr4 159531747 159531862 -24756800 - FLAM_C SINE Alu -16 117 2 257 214 112 77 chr4 159533080 159533276 -24755386 + L1MC5 LINE L1 7706 7908 -53 1794 156 0 0 chr4 159533305 159533600 -24755062 + AluJb SINE Alu 3 297 -15 764 223 6 6 chr4 159534079 159534245 -24754417 - AluJo SINE Alu 0 302 137 2110 104 3 0 chr4 159534548 159534847 -24753815 - AluSc SINE Alu -9 300 1 641 119 119 0 chr4 159534885 159534986 -24753676 - AluJo SINE Alu -182 130 18 2551 42 0 0 chr4 159535691 159536001 -24752661 + AluY SINE Alu 1 310 -1 957 172 11 6 chr4 159536092 159536272 -24752390 - AluJo SINE Alu -10 302 122 186 43 0 0 chr4 159536279 159536302 -24752360 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1777 126 41 27 chr4 159536313 159536607 -24752055 - AluSx SINE Alu -14 298 1 2205 97 0 0 chr4 159536611 159536901 -24751761 - AluSq SINE Alu -21 292 3 812 151 0 14 chr4 159536951 159537090 -24751572 - AluJo SINE Alu -175 137 1 201 182 0 0 chr4 159537105 159537138 -24751524 + T-rich Low_complexity Low_complexity 1 33 0 2187 90 0 13 chr4 159537179 159537480 -24751182 - AluSq SINE Alu -16 297 1 1773 116 89 24 chr4 159537571 159537864 -24750798 - AluSx SINE Alu 0 312 1 1566 169 0 24 chr4 159538151 159538446 -24750216 + AluJo SINE Alu 13 300 -12 2306 87 0 0 chr4 159538638 159538936 -24749726 - AluSc SINE Alu -11 298 1 2474 68 0 0 chr4 159539447 159539754 -24748908 - AluY SINE Alu -4 307 1 1176 171 0 5 chr4 159539847 159540063 -24748599 - AluJo SINE Alu -14 298 84 264 231 87 29 chr4 159540972 159541076 -24747586 + L1MC5 LINE L1 7805 7914 -47 1689 145 0 11 chr4 159541109 159541392 -24747270 - AluJb SINE Alu -32 280 1 21 0 0 0 chr4 159541402 159541423 -24747239 + AT_rich Low_complexity Low_complexity 1 21 0 444 202 12 24 chr4 159541725 159541809 -24746853 - MER2 DNA MER2_type -262 83 1 1381 158 27 8 chr4 159541841 159542100 -24746562 - AluJo SINE Alu -3 309 46 1696 108 157 0 chr4 159542338 159542606 -24746056 - AluSp SINE Alu -2 311 2 266 179 89 0 chr4 159542606 159542662 -24746000 + AluJ/FRAM SINE Alu 225 285 -17 1327 189 9 46 chr4 159543651 159543974 -24744688 - AluJb SINE Alu 0 312 2 1376 101 48 40 chr4 159544098 159544215 -24744447 + MER30 DNA MER1_type 1 115 -115 1774 94 15 103 chr4 159544215 159544545 -24744117 + AluSq SINE Alu 1 301 -12 1376 101 48 40 chr4 159544545 159544655 -24744007 + MER30 DNA MER1_type 115 230 0 370 215 23 0 chr4 159544676 159544778 -24743884 - L1MA9 LINE L1 -94 6074 5968 877 154 0 43 chr4 159544879 159545041 -24743621 + AluSg/x SINE Alu 134 288 -22 414 259 111 23 chr4 159545139 159545235 -24743427 + L1MC4 LINE L1 7807 7893 -149 2097 108 7 0 chr4 159545235 159545532 -24743130 + AluSp SINE Alu 1 299 -14 414 259 111 23 chr4 159545532 159545651 -24743011 + L1MC4 LINE L1 7893 8041 -1 224 359 38 30 chr4 159546107 159546238 -24742424 + MIR SINE MIR 48 179 -83 315 234 0 56 chr4 159546278 159546385 -24742277 - L1MC5 LINE L1 -380 7581 7481 1795 141 0 0 chr4 159546439 159546715 -24741947 - AluSx SINE Alu -35 277 2 322 247 0 54 chr4 159547063 159547156 -24741506 - MIR SINE MIR -26 236 149 346 286 88 53 chr4 159547442 159547659 -24741003 + MIR SINE MIR 19 248 -14 1962 122 3 3 chr4 159547815 159548103 -24740559 + AluSx SINE Alu 1 288 -24 321 204 0 4 chr4 159548342 159548452 -24740210 - MER8 DNA MER2_type -73 166 12 782 164 0 8 chr4 159548524 159548658 -24740004 + FLAM_C SINE Alu 1 133 0 1981 121 10 0 chr4 159548878 159549175 -24739487 + AluSq SINE Alu 1 300 -13 231 167 0 0 chr4 159549176 159549212 -24739450 - MIR SINE MIR -163 99 64 3115 198 29 73 chr4 159549297 159550311 -24738351 + LTR5 LTR ERVK 1 969 0 2191 75 0 16 chr4 159550524 159550829 -24737833 - AluY SINE Alu -3 308 9 1002 161 102 0 chr4 159550861 159551047 -24737615 + Tigger2a DNA MER2_type 2 212 -2496 1664 165 48 3 chr4 159551047 159551338 -24737324 - AluJo SINE Alu -8 304 1 1002 161 102 0 chr4 159551338 159551356 -24737306 + Tigger2a DNA MER2_type 212 227 -207 21 0 0 0 chr4 159551344 159551365 -24737297 + AT_rich Low_complexity Low_complexity 1 21 0 * 4337 173 53 21 chr4 159551383 159552220 -24736442 - MER54A LTR ERVL -34 867 5 271 273 36 96 chr4 159552370 159552619 -24736043 + L2 LINE L2 3004 3237 -76 1530 122 131 25 chr4 159552648 159552969 -24735693 + MER46B DNA MER2_type 4 233 -3 305 253 151 7 chr4 159553407 159553553 -24735109 + HAL1 LINE L1 2205 2371 -136 762 238 186 8 chr4 159558358 159558504 -24730158 + AluSg SINE Alu 2 121 -179 2007 111 0 0 chr4 159558504 159558825 -24729837 + AluSx SINE Alu 13 333 0 762 238 186 8 chr4 159558825 159558925 -24729737 + AluSg SINE Alu 121 293 -7 28 48 0 0 chr4 159561421 159561463 -24727199 + AT_rich Low_complexity Low_complexity 1 42 0 2459 41 7 3 chr4 159562474 159562764 -24725898 - AluY SINE Alu -19 292 2 635 168 0 19 chr4 159563825 159563932 -24724730 + FLAM_C SINE Alu 2 106 -37 196 137 39 0 chr4 159563932 159563983 -24724679 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 1190 97 0 0 chr4 159564194 159564349 -24724313 + AluSg/x SINE Alu 154 308 -4 7785 72 5 4 chr4 159564609 159565577 -24723085 + LTR5 LTR ERVK 1 969 0 21026 72 13 6 chr4 159565577 159568275 -24720387 + HERVK LTR ERVK 1 2715 -4528 18072 42 10 6 chr4 159568253 159568348 -24720314 + HERVK LTR ERVK 4951 5044 -2199 * 2462 73 13 0 chr4 159568348 159568649 -24720013 + AluSp SINE Alu 1 305 -8 18072 42 10 6 chr4 159568649 159570743 -24717919 + HERVK LTR ERVK 5044 7148 -95 409 84 11 168 chr4 159570743 159570838 -24717824 + SVA Other Other 857 936 -450 8047 58 9 4 chr4 159570838 159571802 -24716860 + LTR5 LTR ERVK 1 969 0 2330 92 3 0 chr4 159573034 159573328 -24715334 + AluSq SINE Alu 2 296 -17 2171 126 0 0 chr4 159573800 159574101 -24714561 + AluSx SINE Alu 3 303 -9 2042 106 33 0 chr4 159574104 159574377 -24714285 + AluSx SINE Alu 1 282 -30 2259 93 0 27 chr4 159574378 159574679 -24713983 + AluY SINE Alu 2 294 -17 332 281 12 0 chr4 159574896 159574978 -24713684 - MIR SINE MIR -139 123 41 2380 87 0 0 chr4 159575054 159575342 -24713320 + AluSx SINE Alu 1 288 -24 213 250 0 0 chr4 159575602 159575650 -24713012 + (TTA)n Simple_repeat Simple_repeat 3 50 0 22 35 0 0 chr4 159575761 159575790 -24712872 + AT_rich Low_complexity Low_complexity 1 29 0 2080 70 0 8 chr4 159577032 159577290 -24711372 + AluY SINE Alu 55 310 -1 839 153 15 0 chr4 159578005 159578136 -24710526 + FLAM_C SINE Alu 1 133 0 468 103 0 0 chr4 159578234 159578302 -24710360 - Alu SINE Alu -7 302 235 1986 130 7 7 chr4 159578303 159578604 -24710058 - AluSg SINE Alu -9 301 1 24 0 0 0 chr4 159578747 159578771 -24709891 + AT_rich Low_complexity Low_complexity 1 24 0 1588 111 5 0 chr4 159578976 159579183 -24709479 + AluSx SINE Alu 9 216 -96 357 229 0 0 chr4 159679184 159679267 -24609395 + L1MA9 LINE L1 5879 5961 -351 425 287 154 54 chr4 159679542 159679839 -24608823 - L2 LINE L2 -658 2656 2302 1241 231 59 46 chr4 159679839 159680297 -24608365 + MLT1C LTR MaLR 4 467 0 425 287 154 54 chr4 159680297 159680427 -24608235 - L2 LINE L2 -1012 2302 2186 749 244 115 75 chr4 159680452 159680661 -24608001 + L2 LINE L2 2952 3182 -131 2082 120 3 3 chr4 159680661 159680952 -24607710 - AluSx SINE Alu -21 291 1 749 244 115 75 chr4 159680952 159681090 -24607572 + L2 LINE L2 3182 3313 0 183 315 48 55 chr4 159681133 159681298 -24607364 - L2 LINE L2 -1617 1697 1534 13960 96 14 5 chr4 159681345 159683412 -24605250 - L1P LINE L1 -4058 2088 5 891 176 0 0 chr4 159683412 159683554 -24605108 - AluSq/x SINE Alu -171 142 1 6197 105 1 15 chr4 159683587 159684569 -24604093 - L1P LINE L1 -3305 2841 1874 21 36 0 0 chr4 159685085 159685113 -24603549 + AT_rich Low_complexity Low_complexity 1 28 0 1656 173 3 22 chr4 159685296 159685608 -24603054 - AluJo SINE Alu -6 306 1 290 315 153 60 chr4 159685630 159685944 -24602718 - L3 LINE CR1 -333 1244 902 408 298 194 5 chr4 159685985 159686176 -24602486 - MIR SINE MIR -17 245 19 1183 216 300 6 chr4 159686256 159686752 -24601910 - L1MC3 LINE L1 -20 7765 7124 183 42 0 0 chr4 159687058 159687082 -24601580 + (TTA)n Simple_repeat Simple_repeat 2 25 0 14058 53 24 1 chr4 159687087 159689769 -24598893 - L1PA5 LINE L1 -15 6139 3390 * 14460 101 14 6 chr4 159689754 159691924 -24596738 - L1PA5 LINE L1 -3949 2197 11 499 218 21 7 chr4 159691954 159692096 -24596566 + MER103 DNA DNA 12 155 -11 2041 130 31 3 chr4 159692395 159692687 -24595975 - AluSx SINE Alu -12 300 1 21 0 0 0 chr4 159692743 159692764 -24595898 + AT_rich Low_complexity Low_complexity 1 21 0 1009 179 0 0 chr4 159692764 159692920 -24595742 - AluJb SINE Alu -20 292 137 345 292 172 4 chr4 159692921 159693188 -24595474 - MARNA DNA Mariner -134 452 141 195 42 0 0 chr4 159693525 159693549 -24595113 + (TG)n Simple_repeat Simple_repeat 1 24 0 933 195 0 6 chr4 159693976 159694140 -24594522 + FRAM SINE Alu 1 159 -17 233 256 0 0 chr4 159694159 159694202 -24594460 - L2 LINE L2 -13 3259 3217 326 320 56 2 chr4 159694776 159694907 -24593755 - MIR SINE MIR -54 154 15 752 165 8 0 chr4 159696131 159696264 -24592398 - MSTD LTR MaLR -30 366 233 1173 147 101 107 chr4 159696340 159696686 -24591976 - LTR14A LTR ERVK 0 344 1 26 82 0 0 chr4 159697487 159697548 -24591114 + AT_rich Low_complexity Low_complexity 1 61 0 391 282 32 8 chr4 159697940 159698064 -24590598 - MIR SINE MIR -79 183 57 24 32 0 0 chr4 159698294 159698325 -24590337 + AT_rich Low_complexity Low_complexity 1 31 0 225 287 77 91 chr4 159699227 159699370 -24589292 - L2 LINE L2 -17 3255 3115 246 304 52 76 chr4 159699390 159699640 -24589022 + L2 LINE L2 1852 2095 -1219 201 159 0 0 chr4 159700276 159700320 -24588342 + (TG)n Simple_repeat Simple_repeat 1 44 0 2293 74 45 0 chr4 159701181 159701493 -24587169 - LTR17 LTR ERV1 -454 326 1 17099 57 7 1 chr4 159701493 159703702 -24584960 - HERV17 LTR ERV1 0 8626 6404 36400 46 2 4 chr4 159704116 159709654 -24579008 - L1PA5 LINE L1 -8 6146 623 708 24 0 0 chr4 159709652 159709736 -24578926 - L1PA5 LINE L1 -6048 98 15 * 1910 182 25 22 chr4 159710109 159710511 -24578151 - MER57A LTR ERV1 0 403 1 277 341 32 77 chr4 159710527 159710747 -24577915 - MIR SINE MIR -25 237 28 1057 44 0 0 chr4 159711170 159711305 -24577357 - L1PA4 LINE L1 0 6155 6021 292 276 152 0 chr4 159711562 159711707 -24576955 - L1ME4a LINE L1 -3 6118 5952 774 257 99 0 chr4 159711718 159711940 -24576722 - MIR SINE MIR 0 262 19 734 176 18 12 chr4 159712019 159712184 -24576478 - MER104 DNA Tc2 0 180 15 268 257 29 19 chr4 159712343 159712448 -24576214 - L1ME4a LINE L1 -427 5694 5589 439 249 54 48 chr4 159712785 159712923 -24575739 - L1ME LINE L1 -5144 1813 1677 1776 188 40 8 chr4 159712923 159713274 -24575388 - MLT1A1 LTR MaLR 0 365 4 439 249 54 48 chr4 159713274 159713444 -24575218 - L1ME LINE L1 -5280 1677 1411 910 179 10 51 chr4 159713444 159713640 -24575022 - AluJo SINE Alu -5 307 120 281 350 23 23 chr4 159714265 159714593 -24574069 - L1ME LINE L1 -5961 986 802 682 173 8 0 chr4 159714689 159714816 -24573846 - MIR SINE MIR -64 198 71 366 313 15 23 chr4 159715073 159715204 -24573458 + L2 LINE L2 3184 3313 0 319 246 105 26 chr4 159716612 159716697 -24571965 + L2 LINE L2 2452 2550 -764 2174 113 0 0 chr4 159716697 159716989 -24571673 + AluSx SINE Alu 1 292 -20 319 246 105 26 chr4 159716989 159717017 -24571645 + L2 LINE L2 2550 2574 -740 521 62 21 21 chr4 159717841 159717938 -24570724 + (TA)n Simple_repeat Simple_repeat 2 98 0 2753 148 14 3 chr4 159717949 159718596 -24570066 - L1M2 LINE L1 -573 5739 5088 2461 21 0 0 chr4 159718717 159719003 -24569659 - L1PA4 LINE L1 -4 6151 5866 234 316 98 40 chr4 159719072 159719246 -24569416 - MIR3 SINE MIR -13 195 12 475 272 70 33 chr4 159719384 159719597 -24569065 - MIR SINE MIR -6 256 36 1846 210 69 6 chr4 159719689 159720155 -24568507 - MER50 LTR ERV1 0 734 240 316 278 243 0 chr4 159720746 159720890 -24567772 + MIR SINE MIR 84 262 0 22 56 0 0 chr4 159721212 159721248 -24567414 + AT_rich Low_complexity Low_complexity 1 36 0 611 339 13 4 chr4 159722811 159723041 -24565621 + MIR SINE MIR 31 262 0 1368 63 0 0 chr4 159723176 159723351 -24565311 + L1PA8 LINE L1 5994 6168 -4 186 282 77 39 chr4 159724235 159724313 -24564349 - MIR SINE MIR -117 145 65 513 278 20 7 chr4 159724315 159724466 -24564196 + MIR SINE MIR 80 232 -30 2123 167 29 2 chr4 159725378 159725791 -24562871 - L1MD1 LINE L1 -6 6236 5813 1438 155 32 0 chr4 159725799 159726077 -24562585 - L1MA4 LINE L1 -8 6292 6006 31569 66 16 2 chr4 159726078 159730258 -24558404 + HERVL LTR ERVL 19 4258 -1396 920 236 65 53 chr4 159730258 159730674 -24557988 - MLT1C LTR MaLR -46 421 1 249 290 140 0 chr4 159730674 159730767 -24557895 - MIR SINE MIR -151 111 6 359 238 12 12 chr4 159732363 159732447 -24556215 + L2 LINE L2 3223 3306 -7 2071 114 7 10 chr4 159732691 159732999 -24555663 + AluSx SINE Alu 2 308 -4 2250 180 11 2 chr4 159733439 159733873 -24554789 + L1PA16 LINE L1 5707 6144 -22 2502 47 3 3 chr4 159735215 159735512 -24553150 - AluY SINE Alu -12 299 3 214 182 23 0 chr4 159736033 159736077 -24552585 + (TGAA)n Simple_repeat Simple_repeat 4 48 0 598 316 18 13 chr4 159736411 159736636 -24552026 - MLT1I LTR MaLR -10 399 174 423 0 0 0 chr4 159737126 159737173 -24551489 + (TG)n Simple_repeat Simple_repeat 2 48 0 362 247 11 0 chr4 159738225 159738314 -24550348 + LTR41 LTR ERVL 77 166 -607 226 211 0 42 chr4 159738722 159738793 -24549869 + LTR41 LTR ERVL 681 748 -25 2161 111 0 14 chr4 159739006 159739303 -24549359 + AluSq SINE Alu 1 293 -20 246 354 39 0 chr4 159740797 159740924 -24547738 + L2 LINE L2 2522 2653 -661 436 269 77 33 chr4 159740964 159741429 -24547233 + L1ME3A LINE L1 4910 5404 -757 645 252 22 18 chr4 159741483 159741709 -24546953 + L1ME3A LINE L1 5398 5624 -538 386 236 47 6 chr4 159741787 159741951 -24546711 + L1ME3A LINE L1 5786 5968 -202 282 277 82 38 chr4 159742013 159742197 -24546465 + L1ME3A LINE L1 5967 6158 -12 2139 125 7 0 chr4 159742260 159742557 -24546105 + AluSx SINE Alu 1 299 -13 374 309 137 11 chr4 159743351 159743636 -24545026 - MLT1H LTR MaLR 0 549 229 1278 224 128 91 chr4 159743657 159744375 -24544287 + LTR1B LTR ERV1 1 745 -81 236 287 170 11 chr4 159744664 159744758 -24543904 - MIR3 SINE MIR -87 121 13 335 337 58 5 chr4 159745437 159745627 -24543035 + MIR SINE MIR 51 250 -12 26 0 0 0 chr4 159746178 159746204 -24542458 + AT_rich Low_complexity Low_complexity 1 26 0 210 171 0 0 chr4 159746475 159746516 -24542146 + (CATA)n Simple_repeat Simple_repeat 4 44 0 1891 165 0 0 chr4 159746610 159746901 -24541761 + AluJb SINE Alu 3 293 -19 2104 140 3 0 chr4 159747154 159747454 -24541208 - AluSx SINE Alu -11 301 1 270 313 0 0 chr4 159747545 159747625 -24541037 + MIR SINE MIR 110 189 -73 2580 62 0 7 chr4 159748169 159748478 -24540184 - AluY SINE Alu -4 307 1 2118 138 10 0 chr4 159748616 159748921 -24539741 - AluSx SINE Alu -2 310 3 826 173 0 0 chr4 159749481 159749614 -24539048 + FLAM_C SINE Alu 1 133 -10 1218 242 66 42 chr4 159749961 159750474 -24538188 - MLT1E LTR MaLR 0 593 1 259 256 90 19 chr4 159750531 159750663 -24537999 - MIR SINE MIR -55 153 16 743 195 13 13 chr4 159751462 159751621 -24537041 - MSTD LTR MaLR -237 159 1 1688 171 70 47 chr4 159752586 159752973 -24535689 + MSTD LTR MaLR 1 396 0 348 318 61 40 chr4 159754026 159754174 -24534488 - MIR SINE MIR -4 258 108 1542 186 0 47 chr4 159755005 159755322 -24533340 - AluJo SINE Alu -6 306 5 2014 122 11 3 chr4 159757144 159757430 -24531232 + AluSq SINE Alu 5 292 -21 364 244 98 16 chr4 159758302 159758425 -24530237 - MER103 DNA DNA -16 150 18 3449 118 24 43 chr4 159758502 159759078 -24529584 + MER61E LTR ERV1 1 565 -4 1772 162 0 27 chr4 159759306 159759640 -24529022 - L1MB3 LINE L1 -2 6181 5857 603 255 20 0 chr4 159760714 159760863 -24527799 + MIR SINE MIR 70 221 -41 1795 156 11 0 chr4 159763926 159764201 -24524461 + AluSx SINE Alu 7 284 -28 2087 132 0 0 chr4 159766848 159767137 -24521525 - AluSg SINE Alu -21 289 1 399 82 0 0 chr4 159767157 159767218 -24521444 - L1MA1 LINE L1 -3 6299 6239 2240 53 0 0 chr4 159767224 159767488 -24521174 - AluY SINE Alu -11 300 37 342 253 25 0 chr4 159767499 159767578 -24521084 + L2 LINE L2 2671 2751 -563 354 318 68 32 chr4 159767735 159767955 -24520707 - L1MB3 LINE L1 -2024 5784 5557 298 381 87 6 chr4 159769083 159769256 -24519406 - MER5A DNA MER1_type -1 188 2 421 283 76 58 chr4 159770170 159770401 -24518261 + MIR SINE MIR 17 253 -9 38 0 0 0 chr4 159771140 159771178 -24517484 + AT_rich Low_complexity Low_complexity 1 38 0 2133 166 78 2 chr4 159771185 159771620 -24517042 - L1MA8 LINE L1 -7 6284 5817 2833 148 45 6 chr4 159771621 159772115 -24516547 - L1MA8 LINE L1 -524 5767 5255 1194 169 53 12 chr4 159772120 159772363 -24516299 + L1 LINE L1 4871 5123 -1023 29911 108 18 74 chr4 159772375 159778904 -24509758 - L1PA7 LINE L1 0 6154 9 943 257 19 0 chr4 159779396 159779602 -24509060 + MER58A DNA MER1_type 2 211 -13 12633 201 51 36 chr4 159779650 159786323 -24502339 - L1MA4A LINE L1 -23 6982 207 295 363 9 18 chr4 159787689 159787802 -24500860 + MIR SINE MIR 26 137 -71 683 117 78 106 chr4 159788063 159788220 -24500442 - L1MA3 LINE L1 0 6305 6152 581 147 20 10 chr4 159788220 159788322 -24500340 - U6 snRNA snRNA 0 107 5 683 117 78 106 chr4 159788322 159788343 -24500319 - L1MA3 LINE L1 -153 6152 6132 281 150 4 50 chr4 159789709 159789957 -24498705 + (TA)n Simple_repeat Simple_repeat 1 236 0 1893 238 104 2 chr4 159791515 159792007 -24496655 + MLT1E LTR MaLR 50 591 -2 388 333 69 0 chr4 159792140 159792284 -24496378 + MIR SINE MIR 103 256 -6 911 260 37 88 chr4 159793612 159794077 -24494585 - LTR16A1 LTR ERVL -16 441 1 475 234 35 41 chr4 159795643 159795747 -24492915 - MIR SINE MIR 0 262 158 1597 180 35 90 chr4 159795747 159796181 -24492481 + MLT2D LTR ERVL 5 414 0 475 234 35 41 chr4 159796181 159796221 -24492441 - MIR SINE MIR -104 158 119 23 54 0 0 chr4 159796654 159796691 -24491971 + AT_rich Low_complexity Low_complexity 1 37 0 220 170 43 0 chr4 159796784 159796831 -24491831 + GA-rich Low_complexity Low_complexity 3 51 0 1339 162 0 9 chr4 159796831 159797053 -24491609 + AluJb SINE Alu 79 298 -14 192 339 68 0 chr4 159797512 159797571 -24491091 + MIR SINE MIR 83 145 -63 21 36 0 0 chr4 159797727 159797755 -24490907 + AT_rich Low_complexity Low_complexity 1 28 0 1586 166 3 38 chr4 159798013 159798326 -24490336 - AluJb SINE Alu -10 302 1 252 200 0 0 chr4 159798427 159798482 -24490180 + (CA)n Simple_repeat Simple_repeat 1 55 0 198 360 16 24 chr4 159798896 159799021 -24489641 + MIR3 SINE MIR 35 158 -50 289 270 107 30 chr4 159799239 159799404 -24489258 - MIR SINE MIR -45 217 40 1040 78 0 0 chr4 159800078 159800206 -24488456 + AluSg/x SINE Alu 172 299 -11 548 76 13 0 chr4 159800532 159800611 -24488051 + L1PA8 LINE L1 6085 6164 -8 387 118 35 0 chr4 159801107 159801192 -24487470 - L1MCa LINE L1 -4425 2001 1914 1337 65 0 32 chr4 159801556 159801742 -24486920 + AluY SINE Alu 1 180 -131 270 81 0 0 chr4 159801923 159801960 -24486702 + (A)n Simple_repeat Simple_repeat 1 37 0 805 271 126 20 chr4 159802126 159802620 -24486042 - L1ME3A LINE L1 -227 5943 5398 816 270 80 59 chr4 159802703 159803119 -24485543 - L1ME3A LINE L1 -867 5279 4841 2261 119 3 0 chr4 159803119 159803430 -24485232 + AluSx SINE Alu 1 312 0 816 270 80 59 chr4 159803430 159803710 -24484952 - L1ME3A LINE L1 -1305 4841 4568 378 274 99 18 chr4 159803862 159804085 -24484577 - L1ME3A LINE L1 -1799 4347 4107 514 279 95 59 chr4 159804175 159804565 -24484097 - L1ME3A LINE L1 -2163 3983 3580 407 268 142 70 chr4 159804679 159804981 -24483681 + HAL1 LINE L1 156 479 -2028 648 171 24 12 chr4 159805135 159805299 -24483363 - MER53 DNA DNA -23 166 1 366 265 265 0 chr4 159805301 159805433 -24483229 + HAL1 LINE L1 658 824 -1683 4467 171 40 31 chr4 159805646 159806401 -24482261 - L1PA10 LINE L1 -5 6163 5416 2496 56 3 3 chr4 159806401 159806704 -24481958 - AluY SINE Alu -8 303 1 4467 171 40 31 chr4 159806704 159807722 -24480940 - L1PA10 LINE L1 -752 5416 4379 503 209 19 0 chr4 159807885 159807990 -24480672 - L1MB5 LINE L1 -9 6165 6059 435 225 9 0 chr4 159808031 159808142 -24480520 - L1MC3 LINE L1 -821 6964 6853 637 278 12 0 chr4 159808218 159808387 -24480275 + MER82 DNA MER2_type 385 555 -98 185 311 68 54 chr4 159808505 159808579 -24480083 + L2 LINE L2 3197 3271 -1 30 59 0 0 chr4 159808691 159808742 -24479920 + AT_rich Low_complexity Low_complexity 1 51 0 1926 193 33 7 chr4 159808882 159809307 -24479355 - L1MA6 LINE L1 -5 6295 5860 2615 182 26 37 chr4 159809313 159810067 -24478595 + L1 LINE L1 2905 3650 -2496 22 0 0 0 chr4 159810402 159810424 -24478238 + AT_rich Low_complexity Low_complexity 1 22 0 1229 159 38 11 chr4 159811569 159811833 -24476829 - L1MA8 LINE L1 -2 6289 6019 1960 162 88 21 chr4 159811833 159812265 -24476397 - LOR1b LTR ERV1 0 461 1 594 121 10 1 chr4 159812266 159812375 -24476287 - L1MA7 LINE L1 -326 5978 5861 2194 89 9 46 chr4 159815187 159815511 -24473151 + AluSx SINE Alu 1 312 0 897 145 7 0 chr4 159815521 159815659 -24473003 + FLAM_C SINE Alu 1 139 -4 21 0 0 0 chr4 159816988 159817009 -24471653 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 159817846 159817870 -24470792 + AT_rich Low_complexity Low_complexity 1 24 0 206 279 0 0 chr4 159817881 159817924 -24470738 - L2 LINE L2 -19 3294 3252 1226 152 14 90 chr4 159818080 159818357 -24470305 - MLT1B LTR MaLR -2 388 133 1677 147 73 93 chr4 159818357 159818839 -24469823 + LTR38B LTR ERV1 1 472 -138 241 284 27 6 chr4 159818813 159818926 -24469736 + LTR38B LTR ERV1 498 611 0 * 653 127 67 60 chr4 159818927 159819061 -24469601 - MLT1B LTR MaLR -255 135 1 233 288 162 9 chr4 159819069 159819180 -24469482 - MIR SINE MIR -111 151 24 352 250 0 0 chr4 159819632 159819720 -24468942 + LTR37B LTR ERV1 8 95 -373 1428 183 41 0 chr4 159819874 159820120 -24468542 + AluJo SINE Alu 3 258 -54 7299 42 20 0 chr4 159820133 159821597 -24467065 - L1PA5 LINE L1 -1 6153 4678 12551 110 7 0 chr4 159821626 159823521 -24465141 - L1P LINE L1 -4228 1918 11 410 249 109 16 chr4 159823589 159823782 -24464880 + L1PB1 LINE L1 6 216 -6647 * 13963 183 22 12 chr4 159823762 159829129 -24459533 + L1PB1 LINE L1 1395 6854 -13 245 217 43 22 chr4 159829130 159829222 -24459440 + LTR37B LTR ERV1 212 305 -163 508 242 17 0 chr4 159830422 159830542 -24458120 + MER94 DNA DNA 13 134 0 849 287 45 20 chr4 159831068 159831315 -24457347 + MIR SINE MIR 9 261 -1 24 77 0 0 chr4 159831824 159831876 -24456786 + AT_rich Low_complexity Low_complexity 1 52 0 5666 128 28 11 chr4 159833206 159834578 -24454084 - L1PA16 LINE L1 0 6166 4785 554 283 14 21 chr4 159837493 159837638 -24451024 - MER5B DNA MER1_type -21 157 14 209 289 140 53 chr4 159838741 159838855 -24449807 + MIR SINE MIR 17 140 -68 367 283 113 9 chr4 159838884 159838990 -24449672 - L2 LINE L2 -5 3267 3151 26 30 0 0 chr4 159839172 159839205 -24449457 + AT_rich Low_complexity Low_complexity 1 33 0 40118 52 7 2 chr4 159839347 159845462 -24443200 - L1PA4 LINE L1 -2 6153 4 192 430 61 18 chr4 159845552 159845666 -24442996 - L2 LINE L2 -25 3247 3129 373 258 126 33 chr4 159845797 159845948 -24442714 - MIR SINE MIR -12 250 86 567 162 18 9 chr4 159846061 159846172 -24442490 - MLT1B LTR MaLR 0 390 279 5702 178 28 23 chr4 159846182 159848440 -24440222 + L1PA16 LINE L1 3873 6146 -20 697 254 121 38 chr4 159848460 159848775 -24439887 - MLT1D LTR MaLR -118 387 47 866 146 18 6 chr4 159848914 159849079 -24439583 + L1MA6 LINE L1 5898 6064 -236 * 40927 36 22 1 chr4 159849077 159854933 -24433729 + L1PA2 LINE L1 1 5982 -173 203 65 120 11 chr4 159855141 159855233 -24433429 + (GTGTG)n Simple_repeat Simple_repeat 5 106 0 318 191 36 25 chr4 159855242 159855525 -24433137 + G-rich Low_complexity Low_complexity 1 286 0 1239 14 7 0 chr4 159855563 159855710 -24432952 + L1PA2 LINE L1 6008 6155 0 1108 189 29 0 chr4 159855710 159855946 -24432716 + L1MA6 LINE L1 6056 6300 0 360 359 107 28 chr4 159856037 159856569 -24432093 - L2 LINE L2 -463 2851 2278 2055 158 167 169 chr4 159856676 159857698 -24430964 + LTR28 LTR ERV1 1 1020 0 24 0 0 0 chr4 159858285 159858309 -24430353 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr4 159858408 159858435 -24430227 + AT_rich Low_complexity Low_complexity 1 27 0 282 352 27 0 chr4 159858631 159858850 -24429812 - L1ME LINE L1 -269 5852 5628 413 306 79 26 chr4 159858944 159859173 -24429489 + LTR33 LTR ERVL 1 241 -280 2959 107 40 2 chr4 159859207 159859655 -24429007 - MER4C LTR ERV1 0 465 1 330 333 9 0 chr4 159859661 159859769 -24428893 + LTR33 LTR ERVL 302 410 -111 30742 39 4 0 chr4 159859825 159864544 -24424118 - L1PA4 LINE L1 -3 6152 1418 280 222 12 0 chr4 159865194 159865275 -24423387 + (TA)n Simple_repeat Simple_repeat 2 83 0 2126 134 0 0 chr4 159865355 159865654 -24423008 + AluSx SINE Alu 2 300 -12 1763 136 11 8 chr4 159865743 159866007 -24422655 + AluSx SINE Alu 21 285 -27 1210 172 98 74 chr4 159866936 159867302 -24421360 + THE1C LTR MaLR 1 375 0 2460 44 3 3 chr4 159917374 159917671 -24370991 - AluY SINE Alu -14 297 1 23 54 0 0 chr4 159918512 159918549 -24370113 + AT_rich Low_complexity Low_complexity 1 37 0 2947 151 11 0 chr4 159919042 159919511 -24369151 + HSMAR2 DNA Mariner 1 474 -828 275 250 110 0 chr4 159920379 159920479 -24368183 - LTR16B LTR ERVL -4 460 350 7668 126 18 16 chr4 159920786 159921989 -24366673 - HSMAR2 DNA Mariner -1 1301 96 183 42 0 0 chr4 159922423 159922447 -24366215 + (TG)n Simple_repeat Simple_repeat 2 25 0 247 363 47 6 chr4 159924243 159924423 -24364239 - MIR SINE MIR -49 213 26 200 339 0 0 chr4 159924958 159925017 -24363645 - L2 LINE L2 -84 3229 3171 24 85 0 0 chr4 159925054 159925113 -24363549 + AT_rich Low_complexity Low_complexity 1 59 0 239 222 0 19 chr4 159928163 159928217 -24360445 + C-rich Low_complexity Low_complexity 4 56 0 21 0 0 0 chr4 159929062 159929083 -24359579 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 159929204 159929225 -24359437 + AT_rich Low_complexity Low_complexity 1 21 0 558 343 92 15 chr4 159929604 159930071 -24358591 - L1M4 LINE L1 -1928 4218 3716 27 62 0 0 chr4 159930218 159930266 -24358396 + AT_rich Low_complexity Low_complexity 1 48 0 415 281 179 42 chr4 159930396 159930965 -24357697 + L1M4 LINE L1 2958 3604 -2542 397 243 157 25 chr4 159930966 159931201 -24357461 + L1M4 LINE L1 3628 3893 -2253 427 283 154 34 chr4 159931437 159931730 -24356932 - LTR16A LTR ERVL -115 335 8 333 345 8 8 chr4 159931872 159931991 -24356671 + MIR SINE MIR 49 167 -95 258 281 44 0 chr4 159932056 159932170 -24356492 + (TATG)n Simple_repeat Simple_repeat 3 121 0 223 296 114 0 chr4 159932172 159932260 -24356402 + MIR SINE MIR 149 246 -16 306 303 64 29 chr4 159932301 159932644 -24356018 + L1M4 LINE L1 4245 4599 -1547 568 284 117 23 chr4 159932766 159933023 -24355639 - LTR33 LTR ERVL -160 361 81 2034 129 3 0 chr4 159933096 159933390 -24355272 + AluSx SINE Alu 1 295 -17 23 0 0 0 chr4 159933390 159933413 -24355249 + AT_rich Low_complexity Low_complexity 1 23 0 301 304 107 31 chr4 159933440 159934120 -24354542 + L1M4 LINE L1 4672 5403 -743 596 127 59 25 chr4 159934447 159934565 -24354097 + AluJb SINE Alu 179 300 -12 25 51 0 0 chr4 159934986 159935025 -24353637 + AT_rich Low_complexity Low_complexity 1 39 0 204 135 0 0 chr4 159935321 159935358 -24353304 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 406 276 140 51 chr4 159935544 159935758 -24352904 - MIR SINE MIR -19 243 11 2169 126 10 0 chr4 159935822 159936124 -24352538 - AluSx SINE Alu -7 305 1 24 53 0 0 chr4 159936756 159936794 -24351868 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr4 159937799 159937820 -24350842 + AT_rich Low_complexity Low_complexity 1 21 0 497 339 34 98 chr4 159938285 159938642 -24350020 + L2 LINE L2 2930 3263 -9 255 388 62 9 chr4 159938893 159939120 -24349542 - LTR16C LTR ERVL -2 489 251 267 31 0 0 chr4 159940138 159940170 -24348492 + (CA)n Simple_repeat Simple_repeat 1 32 0 2309 97 0 3 chr4 159941259 159941559 -24347103 - AluSx SINE Alu -13 299 1 345 289 109 48 chr4 159941663 159942250 -24346412 + L1MEc LINE L1 940 1580 -4816 1358 160 149 0 chr4 159942250 159942512 -24346150 + AluSx SINE Alu 1 301 -11 345 289 109 48 chr4 159942512 159942638 -24346024 + L1MEc LINE L1 1580 1697 -4699 236 61 0 0 chr4 159942729 159942762 -24345900 + HSMAR1 DNA Mariner 1255 1287 0 24 0 0 0 chr4 159943178 159943202 -24345460 + AT_rich Low_complexity Low_complexity 1 24 0 185 274 20 0 chr4 159944120 159944171 -24344491 - L2 LINE L2 -1 3312 3261 727 192 68 143 chr4 159944437 159944671 -24343991 - MLT1A2 LTR MaLR -2 388 207 6434 84 40 0 chr4 159944671 159945624 -24343038 - L1PA10 LINE L1 -14 6154 5195 727 192 68 143 chr4 159945624 159945810 -24342852 - MLT1A2 LTR MaLR -183 207 9 221 261 0 0 chr4 159945814 159945860 -24342802 + (TATATG)n Simple_repeat Simple_repeat 5 50 0 449 287 43 48 chr4 159946302 159946490 -24342172 + MIR SINE MIR 74 260 -2 189 299 45 15 chr4 159947643 159947710 -24340952 + L3 LINE CR1 850 918 -659 188 358 109 10 chr4 159948026 159948227 -24340435 - L3 LINE CR1 -153 1424 1204 258 297 189 7 chr4 159948229 159948377 -24340285 + MIR SINE MIR 17 191 -71 261 57 0 0 chr4 159948731 159948766 -24339896 + (CA)n Simple_repeat Simple_repeat 1 35 0 490 292 0 35 chr4 159949406 159949550 -24339112 + L2 LINE L2 3134 3272 0 327 310 76 19 chr4 159949894 159950052 -24338610 + MIR SINE MIR 7 173 -89 563 136 9 0 chr4 159950109 159950219 -24338443 + CT-rich Low_complexity Low_complexity 4 114 0 717 273 53 9 chr4 159950512 159950739 -24337923 + HsTC2 DNA Tc2 6 242 -1656 1329 203 22 22 chr4 159950740 159951016 -24337646 + AluJo SINE Alu 1 276 -36 464 211 94 22 chr4 159951020 159951104 -24337558 + HsTC2 DNA Tc2 230 307 -1591 2094 143 0 0 chr4 159951104 159951398 -24337264 - AluSx SINE Alu -18 294 1 464 211 94 22 chr4 159951398 159951493 -24337169 + HsTC2 DNA Tc2 307 422 -1476 237 218 0 0 chr4 159951509 159951564 -24337098 + HsTC2 DNA Tc2 1841 1895 -3 1588 241 42 26 chr4 159951658 159952111 -24336551 - MLT1C LTR MaLR 0 467 8 291 164 0 0 chr4 159952197 159952258 -24336404 + (CA)n Simple_repeat Simple_repeat 2 62 0 22 106 0 0 chr4 159952580 159952665 -24335997 + AT_rich Low_complexity Low_complexity 1 85 0 1955 241 61 50 chr4 159952939 159953525 -24335137 + MLT1E LTR MaLR 1 593 0 19921 146 42 5 chr4 159953558 159956809 -24331853 + L1M1 LINE L1 1 3371 -4194 225 143 48 0 chr4 159957109 159957151 -24331511 + (TATG)n Simple_repeat Simple_repeat 1 44 0 399 256 240 0 chr4 159957261 159957407 -24331255 + MIR SINE MIR 42 221 -41 31 76 0 0 chr4 159958504 159958570 -24330092 + AT_rich Low_complexity Low_complexity 1 66 0 2159 105 3 10 chr4 159958793 159959099 -24329563 + AluSx SINE Alu 3 306 -6 879 296 86 15 chr4 159959104 159959442 -24329220 + L1MEc LINE L1 60 421 -5975 450 209 49 84 chr4 159959449 159959674 -24328988 - L1M3e LINE L1 -5544 1486 1270 10187 112 18 3 chr4 159959683 159961152 -24327510 - L1P3 LINE L1 -4971 1490 1 674 283 184 23 chr4 159961539 159962086 -24326576 - L2 LINE L2 0 3313 2671 389 100 0 17 chr4 159962250 159962310 -24326352 + L1PA10 LINE L1 6099 6157 -11 195 297 14 40 chr4 159963663 159963737 -24324925 + MIR SINE MIR 81 152 -110 24 0 0 0 chr4 159963829 159963853 -24324809 + AT_rich Low_complexity Low_complexity 1 24 0 271 358 45 22 chr4 159964079 159964213 -24324449 - L3 LINE CR1 -1 1576 1440 781 286 70 7 chr4 159964695 159965237 -24323425 - L1MEd LINE L1 -2524 3902 3327 22 70 0 0 chr4 159965251 159965294 -24323368 + AT_rich Low_complexity Low_complexity 1 43 0 467 290 87 32 chr4 159965318 159965663 -24322999 - L1MEd LINE L1 -3574 2852 2489 359 217 61 78 chr4 159965758 159965873 -24322789 - L1MEd LINE L1 -4181 2426 2314 379 311 147 8 chr4 159966231 159966638 -24322024 - L1MEd LINE L1 -4737 1689 1255 258 119 0 0 chr4 159967637 159967679 -24320983 - L1M LINE L1 -2379 5429 5388 283 130 0 200 chr4 159969346 159969377 -24319285 - MADE1 DNA Mariner 0 80 44 626 37 25 0 chr4 159969377 159969458 -24319204 + L1PA7 LINE L1 6069 6151 -3 283 130 0 200 chr4 159969458 159969526 -24319136 - MADE1 DNA Mariner -35 45 1 255 305 51 42 chr4 159970910 159971028 -24317634 + MIR SINE MIR 32 150 -58 201 297 102 51 chr4 159971243 159971361 -24317301 + MIR SINE MIR 58 181 -81 14111 162 42 41 chr4 159971769 159976039 -24312623 + L1MA2 LINE L1 3446 7719 -4 5943 18 0 0 chr4 159976271 159976952 -24311710 + L1PA2 LINE L1 5468 6148 -7 24 0 0 0 chr4 159976952 159976976 -24311686 + AT_rich Low_complexity Low_complexity 1 24 0 296 274 131 48 chr4 159978240 159978492 -24310170 - HAL1 LINE L1 -9 2498 2226 31 0 0 0 chr4 159978972 159979003 -24309659 + AT_rich Low_complexity Low_complexity 1 31 0 983 94 77 0 chr4 159979005 159979175 -24309487 - L1MA8 LINE L1 -6 6285 6103 1627 209 23 3 chr4 159979183 159979489 -24309173 + MER44D DNA MER2_type 14 325 -380 1751 159 46 3 chr4 159979491 159979818 -24308844 + MSTB LTR MaLR 86 426 0 603 288 94 63 chr4 159979822 159980628 -24308034 - HAL1 LINE L1 -964 1543 713 233 212 45 15 chr4 159980820 159980886 -24307776 + Charlie7 DNA MER1_type 2531 2598 -14 444 301 121 5 chr4 159981691 159981897 -24306765 + MIR SINE MIR 21 250 -12 23 0 0 0 chr4 159982977 159983000 -24305662 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr4 159983915 159983944 -24304718 + AT_rich Low_complexity Low_complexity 1 29 0 430 290 55 27 chr4 159984876 159985059 -24303603 - MIR3 SINE MIR 0 208 21 24 100 0 0 chr4 159985168 159985248 -24303414 + AT_rich Low_complexity Low_complexity 1 80 0 1495 254 94 47 chr4 159985296 159985681 -24302981 - L1ME3A LINE L1 -44 6126 5699 1903 133 84 0 chr4 159985681 159986013 -24302649 - MER46B DNA MER2_type 0 236 2 1495 254 94 47 chr4 159986013 159986230 -24302432 - L1ME3A LINE L1 -471 5699 5494 2523 100 5 30 chr4 159986231 159986602 -24302060 - THE1B LTR MaLR 0 364 3 7391 182 58 74 chr4 159986604 159987093 -24301569 - THE1B-int LTR MaLR 0 1580 1084 408 187 0 0 chr4 159987093 159987168 -24301494 + MER46B DNA MER2_type 161 235 -1 7391 182 58 74 chr4 159987168 159988058 -24300604 - THE1B-int LTR MaLR -496 1084 151 450 83 0 0 chr4 159988058 159988118 -24300544 - THE1B-int LTR MaLR -1370 210 151 393 107 0 0 chr4 159988120 159988176 -24300486 - THE1B-int LTR MaLR -1372 208 153 1280 102 82 0 chr4 159988176 159988372 -24300290 - THE1B-int LTR MaLR -1368 212 1 2436 123 6 8 chr4 159988372 159988737 -24299925 - THE1B LTR MaLR 0 364 1 13506 223 56 36 chr4 159988764 159995559 -24293103 - L1MA5 LINE L1 0 7002 11 673 248 72 39 chr4 159995567 159995598 -24293064 - L1ME3A LINE L1 -716 5462 5433 1867 154 0 19 chr4 159995598 159995909 -24292753 - AluJb SINE Alu -7 305 1 673 248 72 39 chr4 159995909 159996096 -24292566 - L1ME3A LINE L1 -745 5433 5254 1582 218 52 3 chr4 159996096 159996444 -24292218 - MLT1A1 LTR MaLR 0 365 1 673 248 72 39 chr4 159996444 159996733 -24291929 - L1ME3A LINE L1 -924 5254 4992 286 322 124 41 chr4 159996874 159997415 -24291247 - L1MEd LINE L1 -5042 1077 492 2197 172 48 29 chr4 159997790 159998208 -24290454 + MSTC LTR MaLR 3 428 0 4187 243 200 29 chr4 159998210 159999691 -24288971 + MSTC-int LTR MaLR 2 1735 0 2069 147 81 30 chr4 159999691 160000098 -24288564 + MSTC LTR MaLR 1 428 0 24 0 0 0 chr4 160001002 160001026 -24287636 + AT_rich Low_complexity Low_complexity 1 24 0 1889 68 0 0 chr4 160001320 160001554 -24287108 - AluY SINE Alu -77 234 1 261 109 0 0 chr4 160001820 160001866 -24286796 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 226 321 64 21 chr4 160002034 160002174 -24286488 - MIR SINE MIR 0 262 117 431 245 61 48 chr4 160002546 160002693 -24285969 - MLT1K LTR MaLR -23 565 417 316 358 74 31 chr4 160002795 160002957 -24285705 - MLT1K LTR MaLR -329 259 91 24 0 0 0 chr4 160003395 160003419 -24285243 + AT_rich Low_complexity Low_complexity 1 24 0 198 0 0 0 chr4 160003509 160003531 -24285131 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 185 333 0 0 chr4 160003980 160004034 -24284628 - MIR SINE MIR -5 257 204 239 317 144 61 chr4 160004049 160004409 -24284253 + L2 LINE L2 2249 2638 -676 330 338 66 15 chr4 160004638 160004774 -24283888 + L2 LINE L2 3127 3269 -3 287 331 121 0 chr4 160005354 160005511 -24283151 - MIR SINE MIR 0 262 87 266 349 54 40 chr4 160006939 160007088 -24281574 + MLT1J LTR MaLR 1 151 -360 411 303 46 11 chr4 160007102 160007277 -24281385 + MLT1J LTR MaLR 328 508 -3 302 256 40 88 chr4 160007750 160008011 -24280651 + MLT1H LTR MaLR 22 322 -227 389 213 74 0 chr4 160008071 160008179 -24280483 + MLT1H LTR MaLR 432 547 -2 29 28 0 0 chr4 160008408 160008444 -24280218 + AT_rich Low_complexity Low_complexity 1 36 0 1728 192 0 3 chr4 160008489 160008786 -24279876 - AluJo SINE Alu -16 296 1 1872 154 82 3 chr4 160009393 160009723 -24278939 - MSTB LTR MaLR 0 426 71 425 149 45 0 chr4 160009797 160009864 -24278798 - MSTB LTR MaLR -356 70 1 197 369 85 21 chr4 160009899 160010064 -24278598 + MIR SINE MIR 37 206 -56 211 291 0 0 chr4 160011112 160011167 -24277495 + (TATATG)n Simple_repeat Simple_repeat 5 59 0 1152 232 4 0 chr4 160011507 160011770 -24276892 - L1PB4 LINE L1 -1 6155 5892 210 37 0 0 chr4 160012175 160012202 -24276460 + (TG)n Simple_repeat Simple_repeat 2 28 0 402 21 0 0 chr4 160012205 160012252 -24276410 + (TA)n Simple_repeat Simple_repeat 2 48 0 1641 166 20 116 chr4 160013715 160014173 -24274489 + MLT2D LTR ERVL 1 414 0 271 194 45 15 chr4 160016382 160016449 -24272213 - L2 LINE L2 -558 2756 2688 482 208 0 10 chr4 160016483 160016584 -24272078 - L1MD3 LINE L1 -549 7446 7347 423 0 0 0 chr4 160016590 160016637 -24272025 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 533 189 0 11 chr4 160016689 160016779 -24271883 - 7SLRNA srpRNA srpRNA -21 299 211 484 275 6 44 chr4 160016780 160016947 -24271715 - MIR SINE MIR -39 223 65 1424 204 38 46 chr4 160017067 160017435 -24271227 - MLT1A1 LTR MaLR 0 365 1 2447 170 33 25 chr4 160017456 160017969 -24270693 + L1MA8 LINE L1 5746 6262 -29 633 171 86 29 chr4 160018180 160018320 -24270342 + L1MB8 LINE L1 6030 6177 -1 1023 168 34 6 chr4 160018464 160018643 -24270019 + MLT1A2 LTR MaLR 191 374 0 222 266 3 20 chr4 160018645 160018714 -24269948 - MIR SINE MIR -102 106 40 428 267 4 4 chr4 160018846 160019098 -24269564 + CT-rich Low_complexity Low_complexity 1 252 0 224 300 0 17 chr4 160019505 160019565 -24269097 - L2 LINE L2 -8 3305 3247 285 319 319 0 chr4 160019958 160020124 -24268538 + MIR SINE MIR 13 231 -31 530 294 47 28 chr4 160020498 160020709 -24267953 - MIR SINE MIR -20 242 28 2413 90 0 3 chr4 160020795 160021105 -24267557 + AluSc SINE Alu 1 309 0 294 29 0 0 chr4 160021372 160021407 -24267255 + (CA)n Simple_repeat Simple_repeat 1 35 0 209 386 38 4 chr4 160022419 160022554 -24266108 - MIR SINE MIR -55 153 10 5992 141 4 4 chr4 160022586 160023541 -24265121 - Tigger1 DNA MER2_type 0 2418 1464 3369 163 55 6 chr4 160023601 160024238 -24264424 - L1MA4 LINE L1 -24 6276 5609 266 105 26 0 chr4 160024239 160024277 -24264385 + L1M1 LINE L1 5613 5651 -649 2274 195 36 68 chr4 160024283 160024947 -24263715 - L1 LINE L1 -3400 4165 3523 6212 183 8 0 chr4 160024950 160026018 -24262644 - Tigger1 DNA MER2_type -1342 1076 1 21 0 0 0 chr4 160026226 160026247 -24262415 + AT_rich Low_complexity Low_complexity 1 21 0 6732 192 28 16 chr4 160026265 160026693 -24261969 - L1PA16 LINE L1 -8 6158 5737 279 0 0 0 chr4 160026693 160026724 -24261938 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1906 134 0 0 chr4 160026728 160027003 -24261659 - AluSx SINE Alu -37 275 1 6732 192 28 16 chr4 160027003 160028944 -24259718 - L1PA16 LINE L1 -431 5735 3767 2129 169 72 8 chr4 160029754 160030156 -24258506 + MSTA LTR MaLR 1 428 0 435 323 26 13 chr4 160030261 160030416 -24258246 - L1MC/D LINE L1 -2089 5719 5563 32 98 0 0 chr4 160030496 160030598 -24258064 + AT_rich Low_complexity Low_complexity 1 102 0 1423 62 5 10 chr4 160030862 160031056 -24257606 - L1PA8 LINE L1 -223 5949 5757 1572 67 5 22 chr4 160031056 160031279 -24257383 + L1PA8 LINE L1 5952 6170 -2 308 343 21 7 chr4 160031279 160031422 -24257240 - L1MC/D LINE L1 -1089 5057 4913 280 261 15 23 chr4 160031454 160031584 -24257078 + (TA)n Simple_repeat Simple_repeat 2 130 0 486 286 61 68 chr4 160031584 160031878 -24256784 - L1MC/D LINE L1 -1327 4819 4528 4458 105 16 12 chr4 160031887 160032565 -24256097 + L1PA16 LINE L1 5477 6157 -9 992 280 65 52 chr4 160032656 160033152 -24255510 - MLT1J LTR MaLR -9 502 1 362 358 77 14 chr4 160034383 160034590 -24254072 + MIR SINE MIR 2 221 -41 238 254 14 0 chr4 160034606 160034677 -24253985 + (CTA)n Simple_repeat Simple_repeat 1 72 0 807 246 118 28 chr4 160034884 160035265 -24253397 + MLT1H LTR MaLR 60 549 0 22 35 0 0 chr4 160035414 160035443 -24253219 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 160035578 160035600 -24253062 + AT_rich Low_complexity Low_complexity 1 22 0 817 101 14 7 chr4 160035917 160036056 -24252606 + (GGAA)n Simple_repeat Simple_repeat 1 140 0 2161 286 160 68 chr4 160037526 160038054 -24250608 - L2 LINE L2 -264 3049 2571 314 58 39 0 chr4 160038054 160038106 -24250556 + L1MA1 LINE L1 6032 6085 -217 2161 286 160 68 chr4 160038106 160039180 -24249482 - L2 LINE L2 -742 2571 1238 2582 85 0 11 chr4 160041254 160041618 -24247044 - L1PA7 LINE L1 0 6154 5795 315 377 75 7 chr4 160042062 160042208 -24246454 + MIR3 SINE MIR 50 205 -3 22 0 0 0 chr4 160042393 160042415 -24246247 + AT_rich Low_complexity Low_complexity 1 22 0 257 283 53 79 chr4 160042653 160042805 -24245857 - MIR SINE MIR -39 223 76 1724 108 0 0 chr4 160043054 160043285 -24245377 + AluSq SINE Alu 1 231 -82 273 119 0 0 chr4 160043309 160043351 -24245311 + (A)n Simple_repeat Simple_repeat 1 42 0 210 222 0 0 chr4 160044100 160044154 -24244508 + (TA)n Simple_repeat Simple_repeat 1 54 0 335 273 33 33 chr4 160044588 160044709 -24243953 + MLT1I LTR MaLR 289 409 0 1275 218 18 3 chr4 160047070 160047354 -24241308 + L1MA7 LINE L1 4668 4955 -1191 1078 113 0 0 chr4 160047354 160047543 -24241119 + AluSg/x SINE Alu 141 329 0 4271 166 19 7 chr4 160047543 160048630 -24240032 + L1MA7 LINE L1 4953 6054 -237 2896 72 0 5 chr4 160049044 160049433 -24239229 - L1PA8 LINE L1 -3 6169 5783 27 49 0 0 chr4 160049934 160049975 -24238687 + AT_rich Low_complexity Low_complexity 1 41 0 230 323 45 8 chr4 160050300 160050433 -24238229 - MER117 DNA MER1_type -48 149 12 642 282 191 9 chr4 160050621 160050841 -24237821 - MIR SINE MIR 0 262 3 717 265 60 16 chr4 160051062 160051311 -24237351 + MIR SINE MIR 3 262 0 5487 49 7 0 chr4 160053039 160053729 -24234933 - L1PA5 LINE L1 0 6154 5460 486 307 85 9 chr4 160053903 160054115 -24234547 - LTR33 LTR ERVL -293 228 1 23 68 0 0 chr4 160054229 160054273 -24234389 + AT_rich Low_complexity Low_complexity 1 44 0 306 338 15 30 chr4 160054990 160055188 -24233474 - L1ME LINE L1 -400 5721 5527 31 58 0 0 chr4 160055478 160055530 -24233132 + AT_rich Low_complexity Low_complexity 1 52 0 647 205 53 20 chr4 160055686 160055837 -24232825 + MIR SINE MIR 104 259 -3 680 258 118 0 chr4 160055837 160056058 -24232604 + MER46C DNA MER2_type 25 271 -67 1859 219 3 3 chr4 160056161 160056526 -24232136 - MLT1A1 LTR MaLR 0 365 1 180 379 32 0 chr4 160057216 160057311 -24231351 - MIR SINE MIR -64 144 47 242 160 20 0 chr4 160058897 160058947 -24229715 + (TA)n Simple_repeat Simple_repeat 2 52 0 457 300 62 0 chr4 160059070 160059230 -24229432 + MIR SINE MIR 74 243 -19 2109 110 0 52 chr4 160059305 160059631 -24229031 + AluSx SINE Alu 1 309 -3 2998 109 99 4 chr4 160060898 160061395 -24227267 - L1MA3 LINE L1 0 6305 5762 229 229 21 0 chr4 160112576 160112624 -24176038 + CT-rich Low_complexity Low_complexity 3 51 0 408 216 0 0 chr4 160113224 160113326 -24175336 + (TA)n Simple_repeat Simple_repeat 1 102 0 475 181 12 72 chr4 160113381 160113547 -24175115 - LTR37B LTR ERV1 -108 360 205 7188 152 41 45 chr4 160113649 160114127 -24174535 + Tigger1 DNA MER2_type 1001 1480 -938 2173 89 4 0 chr4 160114127 160114430 -24174232 + AluSx SINE Alu 1 304 0 7188 152 41 45 chr4 160114430 160115259 -24173403 + Tigger1 DNA MER2_type 1480 2306 -112 1864 19 0 0 chr4 160115259 160115472 -24173190 - L1PA3 LINE L1 -3 6152 5940 7188 152 41 45 chr4 160115472 160115583 -24173079 + Tigger1 DNA MER2_type 2306 2416 -2 283 394 21 7 chr4 160115862 160116004 -24172658 + L3 LINE CR1 458 601 -976 509 336 81 8 chr4 160116160 160116407 -24172255 - L3 LINE CR1 -160 1417 1153 337 240 93 0 chr4 160116677 160116752 -24171910 + MLT1E2 LTR MaLR 523 604 -22 25 31 0 0 chr4 160117138 160117170 -24171492 + AT_rich Low_complexity Low_complexity 1 32 0 3698 133 82 29 chr4 160117299 160118015 -24170647 - LTR1 LTR ERV1 0 785 32 705 187 89 19 chr4 160118213 160118427 -24170235 + MER69 DNA AcHobo 2060 2288 -238 198 0 0 0 chr4 160119848 160119870 -24168792 + (TTCA)n Simple_repeat Simple_repeat 4 25 0 23 0 0 0 chr4 160120608 160120631 -24168031 + AT_rich Low_complexity Low_complexity 1 23 0 3108 39 8 0 chr4 160120919 160121302 -24167360 + L1PA4 LINE L1 5770 6155 0 24 0 0 0 chr4 160121655 160121679 -24166983 + AT_rich Low_complexity Low_complexity 1 24 0 558 245 0 43 chr4 160122373 160122512 -24166150 + AluSg/x SINE Alu 165 297 -12 42871 34 21 1 chr4 160123091 160129121 -24159541 - L1PA2 LINE L1 -1 6154 1 1564 272 56 17 chr4 160131706 160132170 -24156492 - MLT2F LTR ERVL -181 482 1 1145 230 83 36 chr4 160132170 160132557 -24156105 - Charlie4a DNA MER1_type -21 487 83 1314 227 26 0 chr4 160133291 160133564 -24155098 - L1PA16 LINE L1 -3 6163 5884 952 144 5 41 chr4 160133713 160133908 -24154754 - L1MA3 LINE L1 -5 6300 6113 25 65 0 0 chr4 160133972 160134018 -24154644 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr4 160134143 160134164 -24154498 + AT_rich Low_complexity Low_complexity 1 21 0 2234 81 0 7 chr4 160134263 160134594 -24154068 + AluY SINE Alu 1 329 0 318 333 50 19 chr4 160134867 160135026 -24153636 + MIR SINE MIR 29 192 -70 351 197 13 66 chr4 160135105 160135181 -24153481 - MER2 DNA MER2_type -266 79 8 552 324 46 25 chr4 160135371 160135609 -24153053 + MIR SINE MIR 13 255 -7 216 216 0 0 chr4 160135652 160135703 -24152959 + CT-rich Low_complexity Low_complexity 1 51 0 488 362 80 0 chr4 160135799 160136111 -24152551 + L2 LINE L2 1581 1917 -1397 354 284 92 0 chr4 160136118 160136227 -24152435 + L2 LINE L2 3195 3313 0 328 180 0 50 chr4 160136385 160136485 -24152177 + (TA)n Simple_repeat Simple_repeat 2 96 0 2807 166 27 29 chr4 160136488 160137084 -24151578 - L1MA7 LINE L1 -41 6250 5656 814 371 41 28 chr4 160137147 160137678 -24150984 + L2 LINE L2 2162 2699 -615 21 57 0 0 chr4 160138130 160138165 -24150497 + AT_rich Low_complexity Low_complexity 1 35 0 473 272 234 47 chr4 160138289 160138627 -24150035 + MLT1J2 LTR MaLR 6 406 -44 222 98 59 0 chr4 160138756 160138807 -24149855 + (TA)n Simple_repeat Simple_repeat 1 54 0 * 237 128 0 0 chr4 160138806 160138853 -24149809 + (GA)n Simple_repeat Simple_repeat 2 48 0 1088 189 28 23 chr4 160138853 160139070 -24149592 - AluJb SINE Alu -30 282 65 303 334 142 15 chr4 160139475 160139806 -24148856 + L2 LINE L2 2680 3048 -265 1731 72 0 4 chr4 160139810 160140045 -24148617 - L1PA13 LINE L1 -2 6161 5928 398 295 14 29 chr4 160140058 160140197 -24148465 + L1PA13 LINE L1 1122 1258 -5529 289 253 96 0 chr4 160140375 160140458 -24148204 + L2 LINE L2 3223 3313 0 253 200 38 50 chr4 160140720 160140800 -24147862 + MIR SINE MIR 184 262 0 25 90 0 0 chr4 160140829 160140896 -24147766 + AT_rich Low_complexity Low_complexity 1 67 0 22 0 0 0 chr4 160140947 160140969 -24147693 + AT_rich Low_complexity Low_complexity 1 22 0 2183 117 0 0 chr4 160141345 160141643 -24147019 - AluSq SINE Alu -15 298 1 21 0 0 0 chr4 160141643 160141664 -24146998 + AT_rich Low_complexity Low_complexity 1 21 0 271 350 124 9 chr4 160142328 160142545 -24146117 + MIR SINE MIR 8 249 -13 1282 209 26 85 chr4 160144078 160144466 -24144196 + MLT2D LTR ERVL 2 366 -48 211 275 0 14 chr4 160144466 160144535 -24144127 + CT-rich Low_complexity Low_complexity 2 69 0 252 86 0 0 chr4 160144783 160144818 -24143844 + (TC)n Simple_repeat Simple_repeat 2 36 0 440 316 62 11 chr4 160145104 160145281 -24143381 + MIR SINE MIR 2 187 -75 598 355 42 59 chr4 160145376 160145832 -24142830 + L2 LINE L2 2817 3264 -8 460 319 148 59 chr4 160145985 160146278 -24142384 + L2 LINE L2 2332 2597 -716 2191 79 0 7 chr4 160146278 160146557 -24142105 + AluSc SINE Alu 1 277 -32 279 0 0 0 chr4 160146558 160146589 -24142073 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 460 319 148 59 chr4 160146589 160147141 -24141521 + L2 LINE L2 2596 3259 -54 285 0 67 0 chr4 160148070 160148115 -24140547 + (TC)n Simple_repeat Simple_repeat 1 48 0 450 0 0 0 chr4 160148115 160148165 -24140497 + (TG)n Simple_repeat Simple_repeat 1 50 0 1784 133 26 4 chr4 160148165 160148436 -24140226 - AluSx SINE Alu -33 279 3 228 287 0 15 chr4 160150631 160150833 -24137829 + GA-rich Low_complexity Low_complexity 1 198 0 22 0 0 0 chr4 160151309 160151331 -24137331 + AT_rich Low_complexity Low_complexity 1 22 0 214 330 59 17 chr4 160152138 160152256 -24136406 - MIR SINE MIR -117 145 23 29 20 0 39 chr4 160152652 160152670 -24135992 + AT_rich Low_complexity Low_complexity 1 18 -31 2071 78 0 75 chr4 160152670 160152991 -24135671 + L1PA7 LINE L1 5844 6140 -14 29 20 0 39 chr4 160152991 160153023 -24135639 + AT_rich Low_complexity Low_complexity 18 49 0 251 360 53 9 chr4 160154057 160154171 -24134491 - L2 LINE L2 0 3313 3195 276 292 25 50 chr4 160154483 160154644 -24134018 - MER41B LTR ERV1 -206 429 273 897 285 54 26 chr4 160160153 160160504 -24128158 - LTR40a LTR ERVL -37 482 122 2162 105 3 0 chr4 160161605 160161891 -24126771 + AluSq SINE Alu 1 287 -26 198 0 0 0 chr4 160161987 160162009 -24126653 + (TG)n Simple_repeat Simple_repeat 1 22 0 640 194 0 8 chr4 160162783 160162917 -24125745 - L1MB3 LINE L1 -7 6176 6044 364 358 67 0 chr4 160164157 160164411 -24124251 + L1M4 LINE L1 4985 5255 -891 221 306 47 0 chr4 160164797 160164882 -24123780 + MIR3 SINE MIR 111 199 -9 192 269 32 65 chr4 160164919 160165012 -24123650 + L3b LINE CR1 1286 1375 -208 26 50 0 0 chr4 160165091 160165131 -24123531 + AT_rich Low_complexity Low_complexity 1 40 0 273 29 0 0 chr4 160165254 160165288 -24123374 + (GGAA)n Simple_repeat Simple_repeat 2 35 0 23 68 0 0 chr4 160165452 160165496 -24123166 + AT_rich Low_complexity Low_complexity 1 44 0 506 340 30 51 chr4 160166626 160166958 -24121704 - L2 LINE L2 -434 2880 2556 21 0 0 0 chr4 160168478 160168499 -24120163 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr4 160169962 160169989 -24118673 + (TG)n Simple_repeat Simple_repeat 2 28 0 264 378 60 8 chr4 160170367 160170492 -24118170 + MIR SINE MIR 9 144 -64 259 296 82 10 chr4 160170572 160170670 -24117992 - L2 LINE L2 -19 3294 3190 270 0 0 0 chr4 160170785 160170815 -24117847 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 360 0 0 0 chr4 160170814 160170854 -24117808 + (GA)n Simple_repeat Simple_repeat 2 41 0 1826 184 16 63 chr4 160171791 160172221 -24116441 - MLT2D LTR ERVL 0 414 5 302 315 0 0 chr4 160172640 160172729 -24115933 - MIR SINE MIR -121 141 53 318 335 125 0 chr4 160173933 160174085 -24114577 - MIR SINE MIR -34 228 58 2405 163 22 5 chr4 160175242 160175659 -24113003 - MSTB LTR MaLR 0 426 3 2367 50 0 17 chr4 160176141 160176443 -24112219 - AluY SINE Alu -14 297 1 186 234 47 109 chr4 160176937 160177001 -24111661 - L2 LINE L2 -50 3263 3204 265 264 153 0 chr4 160178565 160178637 -24110025 - MIR SINE MIR -6 256 174 756 269 72 16 chr4 160179937 160180257 -24108405 - L1MA9 LINE L1 -38 6274 5937 906 202 40 0 chr4 160180257 160180430 -24108232 + Tigger2 DNA MER2_type 2539 2718 0 273 75 0 0 chr4 160180435 160180475 -24108187 + (TG)n Simple_repeat Simple_repeat 2 41 0 3865 207 53 12 chr4 160180475 160181889 -24106773 - L1MA9 LINE L1 -379 5933 4464 265 264 153 0 chr4 160181957 160182029 -24106633 - MIR SINE MIR -6 256 174 40 21 0 0 chr4 160182145 160182192 -24106470 + AT_rich Low_complexity Low_complexity 1 47 0 2478 193 29 0 chr4 160182196 160182714 -24105948 - L1MA9 LINE L1 -1695 4451 3919 1036 227 35 113 chr4 160183549 160183955 -24104707 - MLT1A2 LTR MaLR 0 374 1 2165 252 56 20 chr4 160184696 160185558 -24103104 - L1MEd LINE L1 -2787 3342 2450 317 317 49 43 chr4 160185562 160185726 -24102936 - L1MEd LINE L1 -4195 2115 1951 562 307 45 28 chr4 160185928 160186486 -24102176 - L1MEd LINE L1 -4590 1720 1114 351 315 113 1 chr4 160186509 160186759 -24101903 + LTR33 LTR ERVL 46 353 -168 566 276 140 45 chr4 160186762 160187248 -24101414 - L1MEd LINE L1 -5008 1111 580 270 0 0 0 chr4 160187566 160187596 -24101066 + (CTG)n Simple_repeat Simple_repeat 1 30 0 180 0 0 0 chr4 160187596 160187616 -24101046 + (ATG)n Simple_repeat Simple_repeat 2 21 0 2616 145 14 2 chr4 160187675 160188096 -24100566 - MSTA LTR MaLR -2 426 1 1882 176 20 0 chr4 160188639 160188980 -24099682 + MER7A DNA MER2_type 1 346 0 28 0 0 0 chr4 160189372 160189400 -24099262 + AT_rich Low_complexity Low_complexity 1 28 0 2017 137 3 0 chr4 160189400 160189685 -24098977 - AluSx SINE Alu -26 286 1 1465 202 110 37 chr4 160190142 160190577 -24098085 + MLT1C LTR MaLR 1 467 0 30 45 0 0 chr4 160190857 160190901 -24097761 + AT_rich Low_complexity Low_complexity 1 44 0 1862 138 7 30 chr4 160191319 160191624 -24097038 + AluJb SINE Alu 4 301 -11 339 317 37 37 chr4 160191826 160191987 -24096675 - MER5A DNA MER1_type -28 161 1 1138 116 142 49 chr4 160192238 160192463 -24096199 - L1PB4 LINE L1 -17 6139 5894 4883 129 51 5 chr4 160192758 160193548 -24095114 + LTR1B LTR ERV1 1 826 0 277 333 38 23 chr4 160193624 160193756 -24094906 + MIR3 SINE MIR 69 202 -6 24 53 0 0 chr4 160194261 160194299 -24094363 + AT_rich Low_complexity Low_complexity 1 38 0 30 0 0 0 chr4 160194513 160194543 -24094119 + AT_rich Low_complexity Low_complexity 1 30 0 5092 96 16 22 chr4 160194924 160195695 -24092967 - MER4E LTR ERV1 0 766 1 558 248 52 39 chr4 160195903 160196056 -24092606 + L2 LINE L2 3159 3313 0 28 48 0 0 chr4 160196279 160196321 -24092341 + AT_rich Low_complexity Low_complexity 1 42 0 1265 234 111 18 chr4 160196865 160197323 -24091339 - MLT1D LTR MaLR 0 505 5 1935 196 70 5 chr4 160198784 160199181 -24089481 - MSTB LTR MaLR 0 426 4 21 57 0 0 chr4 160199431 160199466 -24089196 + AT_rich Low_complexity Low_complexity 1 35 0 255 31 0 0 chr4 160199914 160199946 -24088716 + (TG)n Simple_repeat Simple_repeat 2 33 0 42171 38 22 1 chr4 160200256 160206282 -24082380 - L1PA3 LINE L1 -3 6152 1 355 321 7 15 chr4 160207105 160207242 -24081420 + MER117 DNA MER1_type 3 138 -59 273 119 0 0 chr4 160207305 160207347 -24081315 + (TATG)n Simple_repeat Simple_repeat 4 45 0 2874 149 23 2 chr4 160207347 160207831 -24080831 - LOR1a LTR ERV1 -3 494 1 422 155 0 12 chr4 160207851 160207935 -24080727 + (TG)n Simple_repeat Simple_repeat 1 83 0 1762 261 67 38 chr4 160210413 160211022 -24077640 - L1M3c LINE L1 -5514 627 1 202 333 37 37 chr4 160211261 160211369 -24077293 - MER5A DNA MER1_type -72 117 10 2027 133 40 43 chr4 160211440 160211816 -24076846 + THE1C LTR MaLR 1 375 0 1026 281 97 34 chr4 160214066 160214321 -24074341 + L1MC5 LINE L1 6820 7057 -985 203 32 65 0 chr4 160214321 160214352 -24074310 + (CATA)n Simple_repeat Simple_repeat 2 34 0 1026 281 97 34 chr4 160214352 160214798 -24073864 + L1MC5 LINE L1 7057 7495 -547 199 279 126 19 chr4 160216392 160216532 -24072130 + MIR SINE MIR 41 192 -70 1235 124 64 9 chr4 160217196 160217414 -24071248 - L1PA11 LINE L1 0 6174 5945 703 225 67 58 chr4 160218383 160218755 -24069907 - L1MC/D LINE L1 -2126 5682 5264 412 334 152 15 chr4 160218873 160219340 -24069322 - L1MC/D LINE L1 -1017 5129 4599 344 322 185 30 chr4 160219387 160219760 -24068902 - L1MC/D LINE L1 -1637 4509 4079 2817 190 20 41 chr4 160219761 160220071 -24068591 - MLT1A1-int LTR MaLR -1141 594 301 1847 129 11 0 chr4 160220071 160220402 -24068260 - AluSx SINE Alu 0 340 7 2817 190 20 41 chr4 160220402 160220696 -24067966 - MLT1A1-int LTR MaLR -1434 301 2 1822 203 3 22 chr4 160220703 160221067 -24067595 - MLT1A1 LTR MaLR -8 357 1 2245 138 12 0 chr4 160221318 160221651 -24067011 - MER1B DNA MER1_type 0 337 1 258 284 46 41 chr4 160222005 160222202 -24066460 - L1MC/D LINE L1 -2190 3956 3759 21 0 0 0 chr4 160222203 160222224 -24066438 + AT_rich Low_complexity Low_complexity 1 21 0 14605 158 29 22 chr4 160222224 160224501 -24064161 - L1MA1 LINE L1 0 6302 4042 3350 149 63 15 chr4 160224501 160225085 -24063577 - LTR9 LTR ERV1 0 612 1 14605 158 29 22 chr4 160225085 160225639 -24063023 - L1MA1 LINE L1 -2260 4042 3493 2600 105 5 0 chr4 160225639 160226012 -24062650 + THE1C LTR MaLR 1 375 0 14605 158 29 22 chr4 160226012 160227193 -24061469 - L1MA1 LINE L1 -2809 3493 2259 835 323 94 45 chr4 160227194 160228241 -24060421 - L1MC/D LINE L1 -2380 3766 2669 22 0 0 0 chr4 160228289 160228311 -24060351 + AT_rich Low_complexity Low_complexity 1 22 0 29 60 0 0 chr4 160228845 160228895 -24059767 + AT_rich Low_complexity Low_complexity 1 50 0 2028 135 3 0 chr4 160229386 160229683 -24058979 - AluSx SINE Alu -14 298 1 185 217 43 22 chr4 160229832 160229878 -24058784 + MER5A DNA MER1_type 54 100 -89 2037 128 0 0 chr4 160230010 160230325 -24058337 - AluSx SINE Alu 0 315 1 644 220 137 11 chr4 160230563 160230745 -24057917 + MER3 DNA MER1_type 1 205 -4 503 197 21 129 chr4 160230775 160230968 -24057694 + MER58C DNA MER1_type 44 215 0 195 42 0 0 chr4 160232696 160232720 -24055942 + (TATAA)n Simple_repeat Simple_repeat 4 27 0 22 0 0 0 chr4 160232994 160233016 -24055646 + AT_rich Low_complexity Low_complexity 1 22 0 202 234 0 0 chr4 160233037 160233084 -24055578 + (TA)n Simple_repeat Simple_repeat 2 48 0 203 300 0 0 chr4 160233087 160233157 -24055505 + (ATTG)n Simple_repeat Simple_repeat 3 72 0 21 0 0 0 chr4 160233393 160233414 -24055248 + AT_rich Low_complexity Low_complexity 1 21 0 200 234 0 16 chr4 160233809 160233873 -24054789 + CT-rich Low_complexity Low_complexity 4 66 0 27 49 0 0 chr4 160234373 160234414 -24054248 + AT_rich Low_complexity Low_complexity 1 41 0 333 0 0 0 chr4 160237153 160237190 -24051472 + (TG)n Simple_repeat Simple_repeat 2 38 0 576 115 0 0 chr4 160237389 160237485 -24051177 - L1PA13 LINE L1 0 6163 6068 275 323 124 61 chr4 160237690 160238052 -24050610 + L3b LINE CR1 1104 1488 -95 374 126 51 22 chr4 160239301 160239410 -24049252 - L1M LINE L1 -768 5398 5292 309 26 0 0 chr4 160239687 160239725 -24048937 + (TG)n Simple_repeat Simple_repeat 2 39 0 499 278 60 68 chr4 160239738 160239972 -24048690 - MIR SINE MIR -23 239 8 389 366 50 7 chr4 160242055 160242334 -24046328 - HERVL LTR ERVL -430 5334 5044 1034 284 58 22 chr4 160242744 160243201 -24045461 - HERVL LTR ERVL -996 4492 4019 375 73 0 0 chr4 160243207 160243262 -24045400 + (CA)n Simple_repeat Simple_repeat 2 56 0 216 0 0 0 chr4 160243690 160243714 -24044948 + (TA)n Simple_repeat Simple_repeat 1 24 0 23 0 0 0 chr4 160243908 160243931 -24044731 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 160244527 160244555 -24044107 + AT_rich Low_complexity Low_complexity 1 28 0 287 291 128 0 chr4 160244738 160244879 -24043783 - L1ME LINE L1 -451 5670 5512 24 0 0 0 chr4 160244899 160244923 -24043739 + AT_rich Low_complexity Low_complexity 1 24 0 31 82 0 0 chr4 160245124 160245197 -24043465 + AT_rich Low_complexity Low_complexity 1 73 0 959 132 15 63 chr4 160245545 160245750 -24042912 - L1MA10 LINE L1 -36 6298 6104 1559 209 0 10 chr4 160246358 160246669 -24041993 - AluJb SINE Alu -4 308 1 21 0 0 0 chr4 160246776 160246797 -24041865 + AT_rich Low_complexity Low_complexity 1 21 0 282 254 0 0 chr4 160248098 160248157 -24040505 - L2 LINE L2 -3 3310 3252 24 0 0 0 chr4 160249842 160249866 -24038796 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr4 160250154 160250179 -24038483 + AT_rich Low_complexity Low_complexity 1 25 0 236 128 0 21 chr4 160253378 160253425 -24035237 + (TG)n Simple_repeat Simple_repeat 1 46 0 2610 45 0 0 chr4 160253678 160253989 -24034673 - AluY SINE Alu 0 311 1 258 156 0 0 chr4 160254222 160254267 -24034395 + (CA)n Simple_repeat Simple_repeat 2 46 0 684 279 100 61 chr4 160254520 160255005 -24033657 - MLT1H LTR MaLR -10 537 1 278 270 47 34 chr4 160255789 160255937 -24032725 + L1MC/D LINE L1 5323 5472 -2336 1044 24 0 0 chr4 160255983 160256110 -24032552 - L1PA4 LINE L1 0 6155 6029 300 256 100 97 chr4 160256190 160256381 -24032281 - L1ME LINE L1 -5139 931 737 10432 87 8 0 chr4 160256381 160258606 -24030056 - L1PA7 LINE L1 -7 6147 3909 300 256 100 97 chr4 160258606 160258703 -24029959 - L1ME LINE L1 -5333 737 642 423 0 0 0 chr4 160258741 160258788 -24029874 + (TTG)n Simple_repeat Simple_repeat 2 48 0 45 79 0 0 chr4 160259981 160260082 -24028580 + AT_rich Low_complexity Low_complexity 1 101 0 383 285 95 18 chr4 160260196 160260480 -24028182 - L1ME4a LINE L1 -213 5908 5603 1034 175 18 58 chr4 160260547 160260770 -24027892 - MER89 LTR ERV1 -2 557 344 1585 100 9 9 chr4 160260886 160261115 -24027547 + AluSc SINE Alu 66 294 -15 222 37 0 0 chr4 160261259 160261286 -24027376 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 3169 86 20 2 chr4 160261286 160261729 -24026933 - L1PA7 LINE L1 -11 6143 5693 189 0 0 0 chr4 160262199 160262220 -24026442 + (T)n Simple_repeat Simple_repeat 1 21 0 1496 197 88 0 chr4 160262337 160262621 -24026041 - AluJb SINE Alu -3 309 1 34 79 0 0 chr4 160263453 160263529 -24025133 + AT_rich Low_complexity Low_complexity 1 76 0 1994 142 76 0 chr4 160263787 160264117 -24024545 - THE1A LTR MaLR 0 355 1 411 298 23 0 chr4 160264287 160264418 -24024244 + MER94 DNA DNA 1 134 0 2337 190 72 2 chr4 160264671 160265171 -24023491 - L1PA16 LINE L1 0 6166 5632 6402 161 101 116 chr4 160265174 160266894 -24021768 - pTR5 LTR ERV1 0 2438 744 3586 164 19 2 chr4 160266894 160267966 -24020696 - L1PA16 LINE L1 -530 5636 4543 420 202 0 28 chr4 160267964 160268073 -24020589 + L1 LINE L1 2917 3022 -3124 * 5977 105 26 14 chr4 160268083 160268989 -24019673 - L1PA13 LINE L1 -14 6149 5232 2277 189 26 75 chr4 160268989 160269572 -24019090 + MLT2B3 LTR ERVL 1 554 0 5977 105 26 14 chr4 160269572 160269830 -24018832 - L1PA13 LINE L1 -931 5232 4979 8485 143 10 3 chr4 160269830 160271284 -24017378 + L1PA13 LINE L1 3524 4988 -1158 1280 170 38 0 chr4 160271610 160271875 -24016787 + Tigger1 DNA MER2_type 807 1081 -1337 2501 21 0 0 chr4 160372775 160373108 -23915554 - AluY SINE Alu 0 333 1 234 150 0 0 chr4 160373166 160373206 -23915456 + (CA)n Simple_repeat Simple_repeat 2 41 0 589 252 0 19 chr4 160374517 160374676 -23913986 - AluSg/x SINE Alu 0 312 157 357 220 58 58 chr4 160374963 160375136 -23913526 - Charlie7 DNA MER1_type 0 2612 2440 2202 112 7 0 chr4 160375517 160375813 -23912849 - AluSx SINE Alu -14 298 1 377 307 61 0 chr4 160375913 160376027 -23912635 - MIR3 SINE MIR -52 156 36 231 113 48 0 chr4 160376560 160376622 -23912040 + (TA)n Simple_repeat Simple_repeat 1 65 0 304 246 0 14 chr4 160376623 160376692 -23911970 - L1MC4 LINE L1 -1339 6703 6636 2748 219 88 28 chr4 160376839 160377699 -23910963 + MER63C DNA MER1_type 19 930 0 3446 204 76 19 chr4 160379624 160380851 -23907811 - L1MB8 LINE L1 0 6178 4908 311 233 124 16 chr4 160380899 160381028 -23907634 - L1MB8 LINE L1 -2978 3168 3026 1811 165 40 18 chr4 160381055 160381382 -23907280 - MER2 DNA MER2_type -10 335 2 409 268 186 31 chr4 160381392 160381747 -23906915 - L1MB8 LINE L1 -3129 3017 2608 393 327 72 7 chr4 160382411 160382564 -23906098 - L2 LINE L2 -518 2796 2634 182 238 224 49 chr4 160382634 160382777 -23905885 - L2 LINE L2 -917 2397 2230 492 292 76 35 chr4 160382812 160382983 -23905679 + MER5B DNA MER1_type 1 178 0 180 375 52 26 chr4 160383604 160383796 -23904866 + L2 LINE L2 2148 2344 -970 187 345 73 9 chr4 160383803 160383913 -23904749 - L2 LINE L2 -672 2642 2526 21 0 0 0 chr4 160384240 160384261 -23904401 + AT_rich Low_complexity Low_complexity 1 21 0 396 0 0 0 chr4 160387326 160387370 -23901292 + (TG)n Simple_repeat Simple_repeat 2 45 0 211 329 43 0 chr4 160387734 160387804 -23900858 - MIR SINE MIR -85 177 105 182 352 0 28 chr4 160388240 160388311 -23900351 - L2 LINE L2 -36 3236 3168 1168 166 18 81 chr4 160388323 160388578 -23900084 + L1PA16 LINE L1 5069 5296 -870 1559 129 43 14 chr4 160388578 160388856 -23899806 + L1PA13 LINE L1 5878 6163 0 1168 166 18 81 chr4 160388856 160389042 -23899620 + L1PA16 LINE L1 5296 5492 -674 1739 102 16 8 chr4 160389046 160389302 -23899360 + L1PA10 LINE L1 5911 6168 0 3908 155 5 1 chr4 160389302 160389965 -23898697 + L1PA16 LINE L1 5484 6155 -11 389 253 195 7 chr4 160390134 160390288 -23898374 - MIR SINE MIR -8 254 72 309 206 113 31 chr4 160390486 160390583 -23898079 - MIR SINE MIR -76 186 82 1895 167 20 0 chr4 160391380 160391721 -23896941 - L1MC1 LINE L1 -5 6328 5981 1670 140 119 53 chr4 160391876 160392255 -23896407 - L1MA9 LINE L1 0 6312 5909 827 91 25 0 chr4 160392315 160392436 -23896226 + L1PA16 LINE L1 6033 6156 -10 934 255 47 16 chr4 160393948 160394270 -23894392 + L1ME3 LINE L1 5829 6160 -2 35 41 0 0 chr4 160395442 160395491 -23893171 + AT_rich Low_complexity Low_complexity 1 49 0 2727 160 44 2 chr4 160395512 160396013 -23892649 - L1PA16 LINE L1 -1 6165 5644 347 111 403 0 chr4 160396013 160396085 -23892577 + L1PA16 LINE L1 5547 5647 -514 26 0 0 0 chr4 160396321 160396347 -23892315 + AT_rich Low_complexity Low_complexity 1 26 0 666 227 5 69 chr4 160396557 160396760 -23891902 + MER3 DNA MER1_type 20 209 0 1057 239 30 91 chr4 160397365 160397763 -23890899 - MLT1A2 LTR MaLR 0 374 1 747 291 79 42 chr4 160397773 160398426 -23890236 + L1MEd LINE L1 692 1263 -4942 348 64 0 0 chr4 160398426 160398473 -23890189 + (CA)n Simple_repeat Simple_repeat 1 47 0 747 291 79 42 chr4 160398473 160398558 -23890104 + L1MEd LINE L1 1263 1343 -4862 330 292 62 52 chr4 160399018 160399210 -23889452 + L1MEd LINE L1 2127 2320 -4076 1363 96 0 0 chr4 160399401 160399578 -23889084 + AluSg/x SINE Alu 129 305 -7 2568 135 14 25 chr4 160399632 160400069 -23888593 + Tigger2a DNA MER2_type 1 432 -2 2281 107 0 0 chr4 160400271 160400571 -23888091 + AluSq SINE Alu 2 301 -12 328 270 80 0 chr4 160400718 160400855 -23887807 + L1M4 LINE L1 4570 4717 -1429 2962 121 17 2 chr4 160402425 160402903 -23885759 - L1MA5 LINE L1 -3 6297 5813 28 0 0 0 chr4 160403046 160403074 -23885588 + AT_rich Low_complexity Low_complexity 1 28 0 201 283 0 0 chr4 160404938 160404991 -23883671 + (TA)n Simple_repeat Simple_repeat 2 54 0 26 64 0 0 chr4 160406038 160406085 -23882577 + AT_rich Low_complexity Low_complexity 1 47 0 696 286 126 71 chr4 160406364 160406971 -23881691 + MER77 LTR ERV1 98 598 -7 38 51 0 0 chr4 160407003 160407062 -23881600 + AT_rich Low_complexity Low_complexity 1 59 0 26 0 0 0 chr4 160407798 160407824 -23880838 + AT_rich Low_complexity Low_complexity 1 26 0 25 51 0 0 chr4 160407856 160407895 -23880767 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr4 160410805 160410828 -23877834 + AT_rich Low_complexity Low_complexity 1 23 0 1334 229 72 26 chr4 160411073 160411662 -23877000 + MLT2F LTR ERVL 1 661 -2 1816 225 27 41 chr4 160412365 160412877 -23875785 + MLT1D LTR MaLR 1 505 0 198 313 125 10 chr4 160414217 160414313 -23874349 + MIR SINE MIR 40 146 -62 2316 77 3 22 chr4 160416156 160416467 -23872195 - AluSc SINE Alu -4 305 1 1970 186 84 26 chr4 160416937 160417400 -23871262 - LTR2B LTR ERV1 0 490 1 185 289 0 0 chr4 160417866 160417904 -23870758 - L2 LINE L2 -21 3251 3214 305 255 83 76 chr4 160421239 160421384 -23867278 - MER5A DNA MER1_type -7 182 37 * 339 276 76 28 chr4 160421257 160421402 -23867260 + MER5A DNA MER1_type 32 183 -6 27 29 0 0 chr4 160421405 160421439 -23867223 + AT_rich Low_complexity Low_complexity 1 34 0 1207 96 20 15 chr4 160421442 160421640 -23867022 - L1PA13 LINE L1 -19 6144 5946 3869 208 79 2 chr4 160421741 160422690 -23865972 + L1MD3 LINE L1 6960 7981 -14 4458 206 25 6 chr4 160422701 160424288 -23864374 - L1MB2 LINE L1 -2 6169 4556 1992 195 81 31 chr4 160424709 160425190 -23863472 - MLT1D LTR MaLR 0 505 1 245 172 0 52 chr4 160427357 160427401 -23861261 + MLT1J LTR MaLR 107 147 -364 237 298 0 0 chr4 160427401 160427458 -23861204 + MER96 DNA MER1_type? 1 57 -118 259 359 47 6 chr4 160427478 160427648 -23861014 + LTR67 LTR ERVL 373 549 -8 419 284 115 11 chr4 160427656 160427839 -23860823 + MIR SINE MIR 57 258 -4 2044 136 7 0 chr4 160428241 160428551 -23860111 - AluSx SINE Alu 0 312 1 2051 120 3 23 chr4 160429569 160429878 -23858784 - AluSx SINE Alu -9 303 1 386 306 65 52 chr4 160429906 160430154 -23858508 - MLT1K LTR MaLR -240 348 98 21 0 0 0 chr4 160430517 160430538 -23858124 + AT_rich Low_complexity Low_complexity 1 21 0 1952 162 70 12 chr4 160431950 160432352 -23856310 - L1PB4 LINE L1 -2 6154 5730 2513 229 51 24 chr4 160432374 160433190 -23855472 + L1ME1 LINE L1 5294 6311 -1 202 389 0 11 chr4 160434206 160434296 -23854366 - L2 LINE L2 -9 3263 3175 39 38 0 0 chr4 160434528 160434581 -23854081 + AT_rich Low_complexity Low_complexity 1 53 0 537 332 19 25 chr4 160434609 160434872 -23853790 + MIR SINE MIR 3 262 0 455 286 199 36 chr4 160435458 160435982 -23852680 - L2 LINE L2 -4 3309 2695 214 211 0 0 chr4 160436054 160436092 -23852570 + MIR SINE MIR 117 154 -108 2050 131 17 3 chr4 160436148 160436439 -23852223 + AluSx SINE Alu 3 297 -15 1696 175 96 0 chr4 160436595 160436909 -23851753 - MER2 DNA MER2_type -1 344 1 279 196 0 0 chr4 160438075 160438121 -23850541 + MLT1E2 LTR MaLR 1 46 -578 1423 206 111 62 chr4 160438171 160438623 -23850039 + MLT1E2 LTR MaLR 136 624 0 364 225 124 0 chr4 160438840 160438929 -23849733 - MER5A DNA MER1_type -77 112 13 249 250 29 106 chr4 160439152 160439238 -23849424 + MER5A DNA MER1_type 66 144 -45 1527 219 67 15 chr4 160439238 160439581 -23849081 + MLT1A1 LTR MaLR 5 365 0 249 250 29 106 chr4 160439581 160439598 -23849064 + MER5A DNA MER1_type 144 161 -28 728 198 32 19 chr4 160439610 160439767 -23848895 - MER20 DNA MER1_type -5 214 56 504 81 0 0 chr4 160440346 160440420 -23848242 + (TG)n Simple_repeat Simple_repeat 2 75 0 2290 156 25 28 chr4 160440662 160441097 -23847565 - Tigger2a DNA MER2_type 0 434 1 490 305 171 9 chr4 160441351 160441561 -23847101 + MIR SINE MIR 2 245 -17 21 36 0 0 chr4 160443060 160443088 -23845574 + AT_rich Low_complexity Low_complexity 1 28 0 2489 41 3 3 chr4 160443271 160443566 -23845096 + AluY SINE Alu 1 295 -16 229 339 64 58 chr4 160443748 160443919 -23844743 + MIR SINE MIR 65 236 -26 23 0 0 0 chr4 160444460 160444483 -23844179 + AT_rich Low_complexity Low_complexity 1 23 0 932 237 19 9 chr4 160445423 160445634 -23843028 - MER20 DNA MER1_type -5 214 2 389 277 215 29 chr4 160446356 160446598 -23842064 + MLT1K LTR MaLR 238 524 -64 21 36 0 0 chr4 160447341 160447369 -23841293 + AT_rich Low_complexity Low_complexity 1 28 0 197 311 0 0 chr4 160447445 160447506 -23841156 - MIR3 SINE MIR -11 197 137 25 51 0 0 chr4 160447506 160447545 -23841117 + AT_rich Low_complexity Low_complexity 1 39 0 282 322 78 16 chr4 160447690 160447935 -23840727 - L1M4 LINE L1 -601 5560 5301 264 375 96 7 chr4 160448089 160448225 -23840437 - MIR SINE MIR -113 149 2 1144 296 98 45 chr4 160448331 160448793 -23839869 - L1M4 LINE L1 -1050 5079 4643 207 0 0 0 chr4 160448793 160448816 -23839846 + (CA)n Simple_repeat Simple_repeat 1 23 0 1144 296 98 45 chr4 160448816 160449290 -23839372 - L1M4 LINE L1 -1486 4643 4195 777 219 26 13 chr4 160449290 160449445 -23839217 + FAM SINE Alu 1 157 -18 369 0 0 0 chr4 160449447 160449488 -23839174 + (CA)n Simple_repeat Simple_repeat 2 42 0 1144 296 98 45 chr4 160449488 160450043 -23838619 - L1M4 LINE L1 -1934 4195 3505 2298 78 0 0 chr4 160450065 160450392 -23838270 - AluY SINE Alu 0 327 1 1824 152 14 24 chr4 160450543 160450840 -23837822 - AluSx SINE Alu -18 294 1 1354 219 59 81 chr4 160450931 160451596 -23837066 + L1MC1 LINE L1 3887 4536 -1610 398 155 0 0 chr4 160452208 160452279 -23836383 + L1MC1 LINE L1 4613 4683 -1463 * 749 266 120 67 chr4 160452274 160452342 -23836320 - L1M4 LINE L1 -4946 1173 1110 3244 92 11 4 chr4 160452342 160452797 -23835865 + LTR22A LTR ERVK 1 458 0 749 266 120 67 chr4 160452797 160453420 -23835242 - L1M4 LINE L1 -5009 1110 445 4247 161 18 5 chr4 160453999 160454774 -23833888 + L1MC1 LINE L1 5544 6328 -5 2102 135 0 10 chr4 160455209 160455520 -23833142 + AluSg1 SINE Alu 1 308 -1 238 290 121 32 chr4 160456013 160456137 -23832525 - MIR SINE MIR -30 232 98 1734 65 0 5 chr4 160456828 160457044 -23831618 + AluY SINE Alu 86 300 -11 1383 202 0 4 chr4 160457865 160458108 -23830554 + AluJb SINE Alu 22 263 -49 1533 240 49 14 chr4 160458211 160458657 -23830005 + LTR40b LTR ERVL 1 462 0 3111 16 0 11 chr4 160460984 160461348 -23827314 - L1P1 LINE L1 -437 5718 5359 * 3683 7 0 2 chr4 160461336 160461755 -23826907 + L1HS LINE L1 5738 6155 0 23 0 0 0 chr4 160461755 160461778 -23826884 + AT_rich Low_complexity Low_complexity 1 23 0 189 107 0 0 chr4 160461788 160461816 -23826846 + (A)n Simple_repeat Simple_repeat 1 28 0 22 0 0 0 chr4 160462206 160462228 -23826434 + AT_rich Low_complexity Low_complexity 1 22 0 2680 206 23 16 chr4 160462427 160463060 -23825602 + Tigger7 DNA MER2_type 11 2536 -51 9465 204 63 18 chr4 160463163 160466380 -23822282 - L1MC3 LINE L1 -123 8080 4703 2996 264 55 21 chr4 160466369 160467759 -23820903 - L1MC3 LINE L1 -4848 1197 1 * 2078 109 20 3 chr4 160468103 160468396 -23820266 + AluSq SINE Alu 3 300 -13 262 243 207 27 chr4 160469893 160470004 -23818658 + L2 LINE L2 3137 3267 -5 1921 129 7 14 chr4 160470705 160471033 -23817629 - AluSx SINE Alu 0 326 1 23 33 0 0 chr4 160471418 160471448 -23817214 + AT_rich Low_complexity Low_complexity 1 30 0 2265 141 14 6 chr4 160474606 160474968 -23813694 - MLT1A1 LTR MaLR 0 365 1 187 373 87 16 chr4 160475492 160475618 -23813044 - MIR SINE MIR -58 150 16 22 0 0 0 chr4 160475658 160475680 -23812982 + AT_rich Low_complexity Low_complexity 1 22 0 410 271 254 32 chr4 160475759 160476106 -23812556 - MLT1J2 LTR MaLR -26 424 1 1101 283 192 6 chr4 160477369 160477870 -23810792 - LTR50 LTR ERVL -201 594 1 357 340 93 0 chr4 160478056 160478250 -23810412 - MLT1J2 LTR MaLR -238 212 1 768 278 10 24 chr4 160478409 160478618 -23810044 - MIR SINE MIR -26 236 31 2233 109 3 3 chr4 160479882 160480194 -23808468 + AluSx SINE Alu 1 312 0 21 71 0 0 chr4 160480310 160480352 -23808310 + AT_rich Low_complexity Low_complexity 1 42 0 438 256 82 17 chr4 160480592 160480885 -23807777 - L1M4 LINE L1 -3668 2478 2167 228 298 18 0 chr4 160480964 160481021 -23807641 + MIR SINE MIR 43 100 -162 2402 53 0 0 chr4 160481713 160482043 -23806619 + AluY SINE Alu 1 330 0 2113 174 20 0 chr4 160482514 160482905 -23805757 - MER57A LTR ERV1 0 403 5 23 0 0 0 chr4 160483045 160483068 -23805594 + AT_rich Low_complexity Low_complexity 1 23 0 1441 234 3 3 chr4 160483078 160483377 -23805285 + AluJo SINE Alu 3 301 -11 1018 46 0 8 chr4 160483500 160483630 -23805032 - L1PA3 LINE L1 -203 5952 5824 1650 21 0 0 chr4 160483630 160483802 -23804860 + L1PA3 LINE L1 5962 6151 -4 2858 21 0 0 chr4 160484593 160484976 -23803686 - L1PA4 LINE L1 -717 5438 5056 5771 27 0 1 chr4 160484977 160485675 -23802987 + L1PA4 LINE L1 5465 6161 0 32 26 0 0 chr4 160486635 160486674 -23801988 + AT_rich Low_complexity Low_complexity 1 39 0 1348 196 0 26 chr4 160486690 160486956 -23801706 - AluJo SINE Alu -53 259 1 234 172 62 47 chr4 160487074 160487138 -23801524 - LTR50 LTR ERVL -2 793 729 27 0 0 0 chr4 160487455 160487482 -23801180 + AT_rich Low_complexity Low_complexity 1 27 0 743 134 8 8 chr4 160487498 160487625 -23801037 - FLAM_C SINE Alu -5 128 2 228 237 43 0 chr4 160487906 160487999 -23800663 + (TA)n Simple_repeat Simple_repeat 2 98 0 22 0 0 0 chr4 160488568 160488590 -23800072 + AT_rich Low_complexity Low_complexity 1 22 0 280 291 22 22 chr4 160489145 160489279 -23799383 + 7SK RNA RNA 1 134 -59 462 136 0 25 chr4 160489982 160490063 -23798599 - MADE1 DNA Mariner -1 79 1 405 39 0 0 chr4 160490195 160490246 -23798416 + (TG)n Simple_repeat Simple_repeat 1 51 0 262 317 149 24 chr4 160491469 160491718 -23796944 + L2 LINE L2 3019 3298 -15 24 53 0 0 chr4 160491831 160491869 -23796793 + AT_rich Low_complexity Low_complexity 1 38 0 4224 136 21 0 chr4 160492523 160493177 -23795485 + L1PA15 LINE L1 5363 6030 -135 5228 22 0 0 chr4 160493193 160493983 -23794679 - L1P1 LINE L1 -590 5565 4776 941 180 104 4 chr4 160495405 160495655 -23793007 + L1MA4 LINE L1 6026 6300 0 23 0 0 0 chr4 160495655 160495678 -23792984 + AT_rich Low_complexity Low_complexity 1 23 0 1798 335 116 52 chr4 160496811 160499693 -23788969 - L2 LINE L2 -13 3259 189 813 119 0 0 chr4 160499868 160499986 -23788676 + L1PA10 LINE L1 6034 6151 -17 266 309 64 0 chr4 160500105 160500199 -23788463 + MIR SINE MIR 56 155 -107 478 273 216 6 chr4 160500346 160500522 -23788140 + MIR SINE MIR 22 234 -28 39 22 0 0 chr4 160500548 160500594 -23788068 + AT_rich Low_complexity Low_complexity 1 46 0 199 355 86 25 chr4 160501522 160501719 -23786943 + MIR SINE MIR 35 243 -19 202 373 49 10 chr4 160502326 160502428 -23786234 - MIR SINE MIR -122 140 35 1356 123 0 28 chr4 160502510 160502722 -23785940 - AluSg/x SINE Alu -9 301 96 4439 64 25 26 chr4 160502722 160503331 -23785331 - LTR14B LTR ERVK 0 608 1 485 267 154 51 chr4 160504048 160504321 -23784341 + MER46C DNA MER2_type 19 319 -19 2000 151 0 0 chr4 160504329 160504634 -23784028 - AluSx SINE Alu -2 310 6 325 105 18 18 chr4 160504716 160504773 -23783889 - MLT2B1 LTR ERVL 0 520 464 303 209 44 0 chr4 160504773 160504864 -23783798 + (TA)n Simple_repeat Simple_repeat 1 95 0 1479 201 23 40 chr4 160504864 160505292 -23783370 - MLT2B1 LTR ERVL -43 477 1 260 271 82 0 chr4 160505306 160505391 -23783271 + MIR SINE MIR 171 262 0 191 167 24 0 chr4 160505580 160505622 -23783040 + CT-rich Low_complexity Low_complexity 2 44 0 533 186 62 0 chr4 160505626 160505723 -23782939 - FLAM_A SINE Alu -36 106 4 25 0 0 0 chr4 160506781 160506806 -23781856 + AT_rich Low_complexity Low_complexity 1 25 0 221 213 75 12 chr4 160507354 160507434 -23781228 + (TATATG)n Simple_repeat Simple_repeat 6 90 0 2228 109 0 0 chr4 160508246 160508550 -23780112 + AluSx SINE Alu 1 304 -8 510 331 112 28 chr4 160509376 160509933 -23778729 - L1ME4a LINE L1 -176 5945 5314 699 238 55 11 chr4 160512664 160512845 -23775817 - MER5A DNA MER1_type 0 189 1 375 323 48 0 chr4 160513805 160513929 -23774733 - L2 LINE L2 -487 2827 2698 2707 229 44 61 chr4 160513929 160515114 -23773548 - L1ME1 LINE L1 -4 6231 5063 1432 103 0 14 chr4 160515114 160515127 -23773535 + L1PA5 LINE L1 5941 6151 -3 1473 94 0 0 chr4 160515127 160515328 -23773334 + L1PA4 LINE L1 5952 6152 -3 338 233 88 105 chr4 160515328 160515339 -23773323 + L1PA14 LINE L1 5942 6161 0 435 230 0 0 chr4 160515381 160515468 -23773194 - L1ME1 LINE L1 -4594 1802 1716 330 67 0 0 chr4 160515482 160515527 -23773135 + (TG)n Simple_repeat Simple_repeat 2 46 0 250 191 0 0 chr4 160515527 160515569 -23773093 + (TA)n Simple_repeat Simple_repeat 2 43 0 234 78 0 20 chr4 160515569 160515620 -23773042 - LTR66 LTR ERVL -171 439 390 2148 110 0 0 chr4 160515634 160515916 -23772746 - AluSx SINE Alu -30 282 1 4031 278 77 14 chr4 160515917 160517498 -23771164 - L1ME1 LINE L1 -4680 1716 36 187 310 35 0 chr4 160517562 160517620 -23771042 - L2 LINE L2 -593 2721 2662 469 367 15 5 chr4 160517694 160517893 -23770769 - L2 LINE L2 -1066 2248 2048 4043 182 55 24 chr4 160518018 160518118 -23770544 + L1MC1 LINE L1 613 708 -5676 796 22 0 0 chr4 160518118 160518210 -23770452 + L1PA5 LINE L1 6055 6146 -8 4043 182 55 24 chr4 160518210 160519033 -23769629 + L1MC1 LINE L1 708 1565 -4819 4883 200 66 91 chr4 160519044 160520590 -23768072 + L1MC1 LINE L1 3500 5083 -1486 583 122 0 22 chr4 160520590 160520680 -23767982 + AluJb SINE Alu 86 173 -139 4883 200 66 91 chr4 160520680 160520819 -23767843 + L1MC1 LINE L1 5083 5224 -1345 1774 146 0 48 chr4 160520819 160521114 -23767548 + AluJb SINE Alu 21 301 -11 4883 200 66 91 chr4 160521114 160521181 -23767481 + L1MC1 LINE L1 5224 5291 -1278 2245 89 13 0 chr4 160521181 160521484 -23767178 + AluY SINE Alu 1 307 -4 4883 200 66 91 chr4 160521484 160522764 -23765898 + L1MC1 LINE L1 5291 6511 -58 323 333 16 39 chr4 160522998 160523127 -23765535 - MIR SINE MIR -136 126 1 1333 155 0 10 chr4 160523295 160523502 -23765160 - AluJb SINE Alu -17 295 91 41731 60 6 0 chr4 160523633 160529755 -23758907 + L1PA5 LINE L1 2 6153 -1 2184 195 62 0 chr4 160530321 160530849 -23757813 - L1PA4 LINE L1 -842 5304 4709 7218 33 0 1 chr4 160530850 160531720 -23756942 + L1PA4 LINE L1 5283 6151 -4 32 57 0 0 chr4 160531763 160531816 -23756846 + AT_rich Low_complexity Low_complexity 1 53 0 21 36 0 0 chr4 160532161 160532189 -23756473 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr4 160532480 160532503 -23756159 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1151 43 0 0 chr4 160533318 160533481 -23755181 + AluY SINE Alu 144 306 0 1596 173 29 39 chr4 160533738 160534050 -23754612 + AluJb SINE Alu 1 309 -3 242 313 10 62 chr4 160534632 160534728 -23753934 - MIR SINE MIR -140 122 32 21 36 0 0 chr4 160535000 160535028 -23753634 + AT_rich Low_complexity Low_complexity 1 28 0 613 275 90 5 chr4 160535172 160535372 -23753290 - MIR SINE MIR -8 254 38 728 327 68 32 chr4 160536829 160537330 -23751332 - LTR33 LTR ERVL -2 519 1 468 103 26 0 chr4 160538348 160538426 -23750236 - MADE1 DNA Mariner 0 80 1 223 383 72 27 chr4 160538802 160539024 -23749638 - MIR SINE MIR -11 251 20 837 137 0 29 chr4 160539287 160539426 -23749236 - FLAM_C SINE Alu -8 135 1 234 267 44 11 chr4 160540170 160540260 -23748402 - L1MC/D LINE L1 -1974 5834 5742 986 237 294 30 chr4 160540272 160540833 -23747829 - LTR50 LTR ERVL -17 778 70 198 0 0 0 chr4 160540911 160540933 -23747729 + (T)n Simple_repeat Simple_repeat 1 22 0 595 329 59 31 chr4 160540962 160541351 -23747311 - L1MC/D LINE L1 -2116 5692 5293 433 261 97 93 chr4 160541589 160542226 -23746436 - L1MC/D LINE L1 -1120 5026 4387 358 350 88 25 chr4 160542317 160542725 -23745937 - MLT1J1 LTR MaLR -51 399 3 246 323 75 41 chr4 160542820 160543182 -23745480 - L1MC/D LINE L1 -1924 4222 3849 436 335 91 30 chr4 160543483 160543946 -23744716 - L1MC/D LINE L1 -2550 3596 3106 235 285 0 0 chr4 160543948 160544029 -23744633 - L1MC/D LINE L1 -3118 3028 2948 26 64 0 0 chr4 160544582 160544629 -23744033 + AT_rich Low_complexity Low_complexity 1 47 0 27 0 0 0 chr4 160545401 160545428 -23743234 + AT_rich Low_complexity Low_complexity 1 27 0 282 303 101 0 chr4 160545596 160545705 -23742957 - MIR SINE MIR -50 212 93 504 48 0 0 chr4 160548132 160548195 -23740467 + (TTCC)n Simple_repeat Simple_repeat 2 64 0 2013 130 0 0 chr4 160548203 160548487 -23740175 - AluSg SINE Alu -26 284 1 300 293 0 10 chr4 160549045 160549144 -23739518 + MER69 DNA AcHobo 2421 2518 -8 674 246 99 22 chr4 160549187 160549515 -23739147 - LTR40b LTR ERVL -103 416 4 427 342 15 30 chr4 160549579 160549781 -23738881 + MIR SINE MIR 2 200 -62 262 195 98 37 chr4 160550575 160550657 -23738005 + MIR SINE MIR 79 165 -97 1878 213 76 41 chr4 160551281 160551821 -23736841 + MER68 LTR ERV1 2 560 -2 292 203 14 43 chr4 160552159 160552228 -23736434 - MER68 LTR ERV1 -228 334 268 22 35 0 0 chr4 160552533 160552562 -23736100 + AT_rich Low_complexity Low_complexity 1 29 0 208 255 0 0 chr4 160553313 160553360 -23735302 - L2 LINE L2 -4 3309 3263 487 301 74 0 chr4 160553881 160554044 -23734618 + L2 LINE L2 2157 2331 -983 388 295 38 13 chr4 160554044 160554318 -23734344 - LTR16A1 LTR ERVL 0 457 148 1485 321 78 29 chr4 160554908 160555974 -23732688 - MERVL LTR ERVL -2025 3460 2343 883 312 189 4 chr4 160555977 160556542 -23732120 + L2 LINE L2 2648 3313 0 554 249 103 39 chr4 160556664 160556897 -23731765 - LTR16A1 LTR ERVL -168 289 42 870 351 27 25 chr4 160557346 160557902 -23730760 + ERVL LTR ERVL 4402 4997 -700 1010 234 0 5 chr4 160559111 160559316 -23729346 - MER3 DNA MER1_type 0 209 6 22 0 0 0 chr4 160561194 160561216 -23727446 + AT_rich Low_complexity Low_complexity 1 22 0 1618 79 0 5 chr4 160561269 160561483 -23727179 + AluSc SINE Alu 81 293 -16 3587 181 53 3 chr4 160562593 160563352 -23725310 - L1MA5 LINE L1 -2 6298 5502 3897 239 63 8 chr4 160563553 160564735 -23723927 - L1M4 LINE L1 -791 5355 4109 197 338 107 75 chr4 160565567 160566008 -23722654 + L2 LINE L2 2818 3272 0 296 324 105 64 chr4 160566111 160566503 -23722159 - LTR16C LTR ERVL -47 444 37 21 0 0 0 chr4 160567774 160567795 -23720867 + AT_rich Low_complexity Low_complexity 1 21 0 241 185 37 0 chr4 160567892 160567946 -23720716 + L1MC4 LINE L1 6648 6703 -1339 2051 126 0 46 chr4 160567978 160568304 -23720358 + AluSx SINE Alu 1 311 -1 295 143 0 0 chr4 160568310 160568352 -23720310 - FLAM SINE Alu -21 112 71 2475 170 38 55 chr4 160568820 160569367 -23719295 - L1MB2 LINE L1 -9 6162 5625 1953 175 58 8 chr4 160569384 160569744 -23718918 - MSTB LTR MaLR -8 418 41 8078 35 3 0 chr4 160569759 160571504 -23717158 - L1PA2 LINE L1 -2 6153 4405 240 119 24 0 chr4 160571733 160571775 -23716887 + MADE1 DNA Mariner 1 43 -37 2064 119 0 7 chr4 160571874 160572180 -23716482 - AluSx SINE Alu 0 304 1 21 71 0 0 chr4 160572546 160572588 -23716074 + AT_rich Low_complexity Low_complexity 1 42 0 3651 136 46 2 chr4 160573301 160573926 -23714736 - Tigger3(Golem) DNA MER2_type -3 3026 2374 1893 87 8 8 chr4 160573929 160574182 -23714480 + AluSq SINE Alu 1 253 -60 422 361 11 22 chr4 160578406 160578586 -23710076 + MER5B DNA MER1_type 1 178 0 188 333 49 0 chr4 160578767 160578848 -23709814 - MIR SINE MIR -78 184 100 264 100 0 0 chr4 160579674 160579714 -23708948 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 440 293 106 10 chr4 160582670 160582868 -23705794 - MIR SINE MIR -13 249 33 2192 117 3 3 chr4 160583028 160583337 -23705325 + AluSx SINE Alu 1 309 -3 699 222 39 24 chr4 160583508 160583715 -23704947 - MER6B DNA MER2_type 0 210 1 345 286 26 75 chr4 160583779 160584006 -23704656 + L1MC4 LINE L1 7826 8041 -1 209 122 0 24 chr4 160584373 160584414 -23704248 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 666 270 101 39 chr4 160584517 160584847 -23703815 + MLT1G1 LTR MaLR 31 389 -166 405 0 0 0 chr4 160584847 160584892 -23703770 + (TGAG)n Simple_repeat Simple_repeat 4 48 0 666 270 101 39 chr4 160584892 160585071 -23703591 + MLT1G1 LTR MaLR 389 555 0 2187 125 73 14 chr4 160585311 160585655 -23703007 + THE1B LTR MaLR 1 364 0 406 270 10 10 chr4 160585672 160585772 -23702890 - MER91B DNA MER1_type -1 189 90 2248 99 15 21 chr4 160585848 160586180 -23702482 - THE1C LTR MaLR 0 375 46 4323 104 60 83 chr4 160586184 160586974 -23701688 - THE1C-int LTR MaLR -809 771 1 2436 103 21 34 chr4 160586974 160587354 -23701308 - THE1C LTR MaLR 0 375 1 282 215 62 0 chr4 160587356 160587421 -23701241 + MER91 DNA MER1_type 72 140 0 43 64 0 0 chr4 160587733 160587811 -23700851 + AT_rich Low_complexity Low_complexity 1 78 0 201 74 0 0 chr4 160587823 160587850 -23700812 + (TATG)n Simple_repeat Simple_repeat 2 28 0 197 350 75 21 chr4 160588008 160588339 -23700323 - L2 LINE L2 -1054 2260 1912 25 31 0 0 chr4 160588493 160588525 -23700137 + AT_rich Low_complexity Low_complexity 1 32 0 446 306 48 29 chr4 160589256 160589462 -23699200 + MIR SINE MIR 10 219 -43 389 331 91 8 chr4 160589934 160590055 -23698607 + MER5A DNA MER1_type 58 188 -1 359 270 34 0 chr4 160590732 160590821 -23697841 - MIR3 SINE MIR -30 178 87 281 298 115 19 chr4 160590848 160590952 -23697710 - L2 LINE L2 -5 3308 3195 238 200 100 0 chr4 160593908 160593978 -23694684 - L1ME4a LINE L1 -24 6097 6021 30 0 0 0 chr4 160594841 160594871 -23693791 + AT_rich Low_complexity Low_complexity 1 30 0 4372 251 68 37 chr4 160594979 160598832 -23689830 + L1M3a LINE L1 12 3165 -2869 363 283 92 35 chr4 160599370 160599543 -23689119 - MIR SINE MIR -27 235 53 558 315 72 63 chr4 160599582 160600199 -23688463 - L2 LINE L2 -19 3294 2667 313 312 69 4 chr4 160600199 160600475 -23688187 - L1MEd LINE L1 -3549 2580 2287 1452 213 9 29 chr4 160600609 160600924 -23687738 - AluJo SINE Alu -3 309 1 2097 93 10 54 chr4 160601015 160601328 -23687334 - AluSq SINE Alu -14 299 1 254 312 101 29 chr4 160601571 160601709 -23686953 - L2 LINE L2 -359 2954 2807 410 353 159 0 chr4 160602068 160602320 -23686342 - HAL1 LINE L1 -846 1661 1370 334 344 56 6 chr4 160602378 160602538 -23686124 - L1MEd LINE L1 -5025 1094 927 645 160 0 24 chr4 160603044 160603169 -23685493 - L1PB4 LINE L1 0 6156 6035 1801 176 101 52 chr4 160604256 160604733 -23683929 + MLT1D LTR MaLR 1 500 -5 250 250 45 0 chr4 160604777 160604889 -23683773 + L1ME LINE L1 5767 5883 -238 240 279 16 0 chr4 160604944 160605005 -23683657 - MIR SINE MIR 0 262 201 500 92 0 0 chr4 160605041 160605117 -23683545 + L1PA14 LINE L1 6086 6161 0 515 309 103 2 chr4 160605152 160605350 -23683312 - MIR SINE MIR -50 212 5 279 323 0 11 chr4 160606582 160606675 -23681987 + L2 LINE L2 3221 3312 -1 954 252 46 0 chr4 160607475 160607687 -23680975 - MIR SINE MIR -1 261 35 2452 69 0 0 chr4 160607687 160607993 -23680669 - AluY SINE Alu -5 306 1 954 252 46 0 chr4 160607993 160608018 -23680644 - MIR SINE MIR -227 35 13 1984 147 76 9 chr4 160608778 160609119 -23679543 - THE1B LTR MaLR 0 364 1 810 172 50 11 chr4 160609755 160609935 -23678727 - MER5A DNA MER1_type -2 187 1 2259 90 3 0 chr4 160610434 160610744 -23677918 - AluSx SINE Alu -1 311 1 302 75 0 0 chr4 160611556 160611596 -23677066 + AluY SINE Alu 124 163 -138 29942 45 35 2 chr4 160613359 160617144 -23671518 - L1P LINE L1 -2234 3912 1 369 64 0 0 chr4 160617145 160617192 -23671470 - MSTB LTR MaLR -379 47 1 1530 157 143 6 chr4 160617209 160617671 -23670991 - L1M3 LINE L1 -594 5577 5032 1916 145 17 0 chr4 160617884 160618174 -23670488 + AluSq SINE Alu 1 295 -18 426 249 11 54 chr4 160618428 160618613 -23670049 + CT-rich Low_complexity Low_complexity 3 179 0 2194 232 103 23 chr4 160618831 160619537 -23669125 - L1ME1 LINE L1 -41 6125 5363 1079 87 13 0 chr4 160619538 160619688 -23668974 - L1PA7 LINE L1 -4 6150 5999 10347 79 6 7 chr4 160619689 160621115 -23667547 - L1PA7 LINE L1 -876 5270 3846 1458 223 104 24 chr4 160621087 160621626 -23667036 - L1ME1 LINE L1 -755 5391 4810 * 632 261 23 132 chr4 160621977 160622325 -23666337 + L3 LINE CR1 1261 1570 -7 2019 117 7 3 chr4 160622445 160622728 -23665934 - AluSc SINE Alu -23 286 3 326 353 59 50 chr4 160624220 160624543 -23664119 - L2 LINE L2 -370 2944 2619 638 292 78 18 chr4 160624806 160625138 -23663524 - LTR16C LTR ERVL -1 490 139 308 305 13 32 chr4 160625492 160625646 -23663016 - LTR16C LTR ERVL -6 485 335 432 260 66 71 chr4 160628202 160628398 -23660264 + MIR SINE MIR 24 218 -44 248 202 53 64 chr4 160628547 160628641 -23660021 + L2 LINE L2 3118 3210 -103 400 333 92 44 chr4 160628716 160628944 -23659718 - MIR SINE MIR -22 240 2 442 292 97 53 chr4 160629146 160629506 -23659156 - HAL1 LINE L1 -2123 384 9 306 376 98 6 chr4 160629855 160630028 -23658634 + L2 LINE L2 2918 3106 -166 553 349 45 17 chr4 160630076 160630397 -23658265 + L2 LINE L2 2713 3037 -276 2055 310 101 40 chr4 160630700 160632130 -23656532 - L2 LINE L2 -17 3296 1777 24 0 0 0 chr4 160632259 160632283 -23656379 + AT_rich Low_complexity Low_complexity 1 24 0 753 262 36 24 chr4 160632308 160632644 -23656018 - L1M4 LINE L1 -3622 2524 2185 2695 128 8 5 chr4 160633210 160636787 -23651875 + L1PA10 LINE L1 2461 6158 -10 6802 73 4 7 chr4 160637091 160638415 -23650247 + L1PA8 LINE L1 4850 6171 -1 233 257 48 92 chr4 160638745 160639017 -23649645 - HAL1 LINE L1 -98 2409 2150 673 280 50 37 chr4 160639052 160639352 -23649310 - HAL1 LINE L1 -469 2038 1735 606 279 30 46 chr4 160639441 160639703 -23648959 - L1ME1 LINE L1 -5 6161 5904 916 246 181 108 chr4 160639711 160640734 -23647928 - HAL1 LINE L1 -851 1656 559 895 331 49 44 chr4 160640766 160641337 -23647325 - L1MEd LINE L1 -5491 628 55 723 235 73 31 chr4 160642102 160642362 -23646300 - ORSL DNA AcHobo 0 275 5 22 0 0 0 chr4 160643554 160643576 -23645086 + AT_rich Low_complexity Low_complexity 1 22 0 672 199 6 12 chr4 160643760 160643926 -23644736 - L1 LINE L1 -1742 4404 4240 620 202 0 0 chr4 160644057 160644171 -23644491 + L1M2b LINE L1 377 490 -6719 1689 217 46 32 chr4 160644171 160644605 -23644057 - MLT1D LTR MaLR -65 440 1 597 253 134 0 chr4 160644827 160645029 -23643633 + MIR SINE MIR 34 262 0 577 378 43 36 chr4 160648009 160648500 -23640162 - L2 LINE L2 -6 3266 2779 198 313 80 50 chr4 160648911 160649112 -23639550 - L2 LINE L2 -10 3303 3097 332 152 15 0 chr4 160649564 160649630 -23639032 + (TA)n Simple_repeat Simple_repeat 1 67 0 322 276 82 49 chr4 160649848 160650091 -23638571 - L2 LINE L2 -816 2498 2248 258 349 102 28 chr4 160650712 160650967 -23637695 + L2 LINE L2 2703 2976 -338 369 313 17 0 chr4 160651083 160651198 -23637464 + L2 LINE L2 3191 3307 -6 865 230 5 0 chr4 160651315 160651502 -23637160 - MER5A DNA MER1_type 0 189 2 562 273 104 67 chr4 160652043 160652417 -23636245 - MLT1K LTR MaLR -32 556 169 7291 44 7 0 chr4 160653189 160654081 -23634581 - L1PA7 LINE L1 -3 6151 5254 197 296 136 53 chr4 160654174 160654306 -23634356 - L2 LINE L2 -12 3301 3159 709 347 127 34 chr4 160654353 160655307 -23633355 - L2 LINE L2 -230 3042 1976 443 147 202 47 chr4 160655623 160655752 -23632910 - MER53 DNA DNA -37 152 4 244 264 42 14 chr4 160656234 160656306 -23632356 - L3 LINE CR1 -139 1438 1365 25 0 0 0 chr4 160657153 160657178 -23631484 + AT_rich Low_complexity Low_complexity 1 25 0 351 211 145 78 chr4 160658800 160658966 -23629696 - MER5B DNA MER1_type -1 177 1 519 105 0 13 chr4 160659160 160659236 -23629426 - Alu SINE Alu -235 75 1 2134 142 8 84 chr4 160659564 160659971 -23628691 - L1MB1 LINE L1 -2 6166 5799 1676 163 11 28 chr4 160659971 160660254 -23628408 - AluJo SINE Alu -23 289 12 2134 142 8 84 chr4 160660254 160660324 -23628338 - L1MB1 LINE L1 -369 5799 5725 459 108 40 14 chr4 160660327 160660401 -23628261 - AluJ/FLAM SINE Alu -228 84 9 2654 158 26 14 chr4 160660406 160660707 -23627955 - L1M3 LINE L1 -383 5785 5474 273 29 0 0 chr4 160660707 160660741 -23627921 + (TG)n Simple_repeat Simple_repeat 2 35 0 2654 158 26 14 chr4 160660741 160660946 -23627716 - L1M3 LINE L1 -694 5474 5273 210 37 0 0 chr4 160660974 160661001 -23627661 + (TG)n Simple_repeat Simple_repeat 2 28 0 207 0 0 0 chr4 160661171 160661194 -23627468 + (CA)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr4 160661801 160661822 -23626840 + AT_rich Low_complexity Low_complexity 1 21 0 746 253 48 5 chr4 160662453 160662639 -23626023 - MER58A DNA MER1_type -30 194 1 2742 163 11 2 chr4 160663017 160663495 -23625167 - L1PA16 LINE L1 -6 6160 5679 569 180 18 0 chr4 160664287 160664398 -23624264 - Tigger4(Zombi) DNA MER2_type -1 2730 2618 * 1314 197 84 13 chr4 160664392 160664702 -23623960 - MER46B DNA MER2_type -29 207 1 1781 174 0 22 chr4 160666742 160667059 -23621603 + AluJo SINE Alu 3 312 0 610 280 25 95 chr4 160667312 160667637 -23621025 + Charlie8 DNA MER1_type 39 1427 -990 284 145 81 0 chr4 160668844 160668906 -23619756 - MER116 DNA Mariner 0 80 14 220 323 116 18 chr4 160669332 160669496 -23619166 - MIR SINE MIR -4 258 79 2812 7 0 0 chr4 160669595 160669898 -23618764 + AluYb8 SINE Alu 1 303 -15 203 137 0 39 chr4 160670324 160670375 -23618287 + (GAAA)n Simple_repeat Simple_repeat 4 52 0 516 32 0 0 chr4 160670503 160670565 -23618097 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 27 49 0 0 chr4 160670602 160670643 -23618019 + AT_rich Low_complexity Low_complexity 1 41 0 23 54 0 0 chr4 160670741 160670778 -23617884 + AT_rich Low_complexity Low_complexity 1 37 0 2091 139 3 0 chr4 160671027 160671329 -23617333 + AluSx SINE Alu 1 303 -9 237 357 108 16 chr4 160672020 160672149 -23616513 - MLT2E LTR ERVL -455 173 33 183 326 88 54 chr4 160672522 160672669 -23615993 + L2 LINE L2 3116 3267 -5 2128 100 0 4 chr4 160672998 160673320 -23615342 + AluSg SINE Alu 1 321 0 251 302 0 0 chr4 160674537 160674600 -23614062 - L2 LINE L2 -68 3204 3142 33 43 0 0 chr4 160675395 160675442 -23613220 + AT_rich Low_complexity Low_complexity 1 47 0 7914 138 12 21 chr4 160675471 160678349 -23610313 + L1PA3 LINE L1 2019 6715 -159 7914 28 0 0 chr4 160678349 160680080 -23608582 + L1PA3 LINE L1 5145 6874 0 7914 138 12 21 chr4 160680080 160680239 -23608423 + L1PA3 LINE L1 6715 6874 0 459 263 188 25 chr4 160680855 160681015 -23607647 + MIR3 SINE MIR 20 205 -3 24 0 0 0 chr4 160681032 160681056 -23607606 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr4 160681279 160681303 -23607359 + AT_rich Low_complexity Low_complexity 1 24 0 475 279 31 16 chr4 160681947 160682076 -23606586 - L2 LINE L2 -1 3271 3141 440 276 179 37 chr4 160682485 160682753 -23605909 - MER102b DNA MER1_type -35 306 1 531 292 110 38 chr4 160683657 160683893 -23604769 + MIR SINE MIR 8 260 -2 318 194 164 0 chr4 160685077 160685144 -23603518 - Charlie1 DNA MER1_type -2683 78 1 319 288 112 40 chr4 160685182 160685460 -23603202 + HAL1 LINE L1 2125 2422 -85 24 0 0 0 chr4 160685533 160685557 -23603105 + AT_rich Low_complexity Low_complexity 1 24 0 2449 111 28 14 chr4 160685566 160685925 -23602737 - THE1B LTR MaLR 0 364 1 324 260 73 0 chr4 160685928 160686024 -23602638 - MER5A DNA MER1_type -86 103 1 310 191 16 0 chr4 160686052 160686115 -23602547 - MER113 DNA MER1_type? -124 397 334 697 110 0 0 chr4 160686232 160686332 -23602330 - L1PA7 LINE L1 -4 6150 6051 444 338 43 17 chr4 160689592 160689823 -23598839 - MIR SINE MIR -24 238 2 233 342 32 26 chr4 160689842 160689997 -23598665 - L2 LINE L2 -192 3080 2925 336 236 181 16 chr4 160690023 160690150 -23598512 + MIR SINE MIR 61 208 -54 365 298 163 59 chr4 160690183 160691044 -23597618 - L2 LINE L2 -475 2839 1856 2187 89 3 0 chr4 160691044 160691361 -23597301 - AluSx SINE Alu 0 318 1 365 298 163 59 chr4 160691361 160691505 -23597157 - L2 LINE L2 -1458 1856 1728 1143 273 109 21 chr4 160741859 160742291 -23546371 + L2 LINE L2 2221 2690 -624 220 296 19 0 chr4 160742319 160742373 -23546289 - MIR SINE MIR -113 95 41 25 0 0 0 chr4 160742901 160742926 -23545736 + AT_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chr4 160743902 160743935 -23544727 + AT_rich Low_complexity Low_complexity 1 33 0 491 18 0 0 chr4 160744486 160744543 -23544119 - L1P LINE L1 -1522 4624 4568 441 131 0 3 chr4 160744644 160744719 -23543943 - L1M3 LINE L1 -419 5749 5676 362 360 40 21 chr4 160745731 160745880 -23542782 + MIR SINE MIR 14 167 -41 2357 89 3 0 chr4 160746143 160746446 -23542216 + AluSp SINE Alu 4 307 -6 1990 138 10 0 chr4 160747036 160747327 -23541335 - AluSx SINE Alu -18 294 1 732 146 64 0 chr4 160747488 160747598 -23541064 + AluJb SINE Alu 2 118 -194 47 44 0 0 chr4 160747598 160747666 -23540996 + AT_rich Low_complexity Low_complexity 1 68 0 1981 108 38 17 chr4 160748731 160749019 -23539643 + AluSc SINE Alu 1 294 -15 25 0 0 0 chr4 160749504 160749529 -23539133 + AT_rich Low_complexity Low_complexity 1 25 0 2700 274 118 38 chr4 160749597 160750224 -23538438 - Charlie2b DNA MER1_type -1332 1450 875 2376 103 0 0 chr4 160750224 160750534 -23538128 - AluSg SINE Alu 0 310 1 2700 274 118 38 chr4 160750534 160751244 -23537418 - Charlie2b DNA MER1_type -1907 875 6 1543 273 56 29 chr4 160751385 160752081 -23536581 + L1ME3A LINE L1 4616 5330 -816 2134 95 29 0 chr4 160752116 160752415 -23536247 - AluSx SINE Alu 0 309 3 1902 266 26 18 chr4 160752483 160753093 -23535569 + L1ME3A LINE L1 5551 6165 -5 2400 83 0 3 chr4 160753579 160753891 -23534771 + AluY SINE Alu 1 311 0 284 259 46 28 chr4 160753969 160754077 -23534585 + MIR SINE MIR 92 201 -61 402 229 37 55 chr4 160754080 160754189 -23534473 + MIR SINE MIR 53 159 -103 2201 123 0 0 chr4 160754245 160754547 -23534115 + AluSx SINE Alu 1 302 -10 22 0 0 0 chr4 160754682 160754704 -23533958 + AT_rich Low_complexity Low_complexity 1 22 0 2218 168 53 19 chr4 160755315 160755727 -23532935 + MSTB LTR MaLR 1 426 0 207 271 0 21 chr4 160755947 160755995 -23532667 + MER5B DNA MER1_type 132 178 0 5551 80 70 22 chr4 160756378 160757166 -23531496 - LTR12 LTR ERV1 0 826 1 4560 97 2 0 chr4 160757166 160757776 -23530886 - HERV9 LTR ERV1 0 8399 7789 416 113 0 0 chr4 160757772 160757834 -23530828 - HERV9 LTR ERV1 -835 7564 7503 * 594 144 23 60 chr4 160757832 160758047 -23530615 - HERV17 LTR ERV1 -7726 900 694 3362 98 13 0 chr4 160758059 160758519 -23530143 - HERV17 LTR ERV1 -3451 4948 4483 305 131 12 155 chr4 160758746 160758830 -23529832 - MER91C DNA MER1_type -19 121 50 369 261 177 81 chr4 160758929 160759212 -23529450 + L2 LINE L2 3004 3313 0 950 274 128 31 chr4 160759338 160759751 -23528911 + L2 LINE L2 1027 1479 -1835 1398 263 77 65 chr4 160759822 160760365 -23528297 + MER45C DNA AcHobo 10 559 -394 1446 206 40 18 chr4 160760365 160760691 -23527971 + MLT2D LTR ERVL 1 333 -81 405 39 0 0 chr4 160760691 160760742 -23527920 + (CA)n Simple_repeat Simple_repeat 1 51 0 231 128 0 26 chr4 160760742 160760781 -23527881 + MLT2D LTR ERVL 481 518 -2 279 140 40 20 chr4 160760844 160760894 -23527768 + MER45C DNA AcHobo 900 950 -3 531 260 58 26 chr4 160760897 160761051 -23527611 + L2 LINE L2 1472 1630 -1684 27 49 0 0 chr4 160761251 160761292 -23527370 + AT_rich Low_complexity Low_complexity 1 41 0 304 165 24 16 chr4 160761345 160761472 -23527190 + (TA)n Simple_repeat Simple_repeat 2 129 0 42 98 0 0 chr4 160761476 160761609 -23527053 + AT_rich Low_complexity Low_complexity 1 133 0 984 217 8 25 chr4 160761609 160761849 -23526813 + MER46A DNA MER2_type 1 236 0 238 250 25 108 chr4 160762158 160762278 -23526384 - MER102b DNA MER1_type 0 341 232 265 292 49 42 chr4 160763017 160763161 -23525501 + MLT1L LTR MaLR 110 254 -361 355 225 56 0 chr4 160763181 160763270 -23525392 - FLAM_C SINE Alu -9 124 31 953 98 0 0 chr4 160763386 160763509 -23525153 - AluSq/x SINE Alu -190 123 1 1825 145 28 3 chr4 160763653 160763942 -23524720 + AluSx SINE Alu 1 296 -16 390 302 76 35 chr4 160764922 160765094 -23523568 - L1ME1 LINE L1 -54 6112 5934 * 1600 271 99 26 chr4 160765071 160765316 -23523346 - L1MEc LINE L1 -5047 1185 959 318 26 0 0 chr4 160765316 160765355 -23523307 + (TA)n Simple_repeat Simple_repeat 1 39 0 2003 142 0 7 chr4 160765358 160765654 -23523008 - AluSq SINE Alu -19 294 1 1600 271 99 26 chr4 160765654 160766467 -23522195 - L1MEc LINE L1 -5274 958 49 234 0 0 0 chr4 160767080 160767106 -23521556 + (A)n Simple_repeat Simple_repeat 1 26 0 503 311 110 40 chr4 160767109 160767537 -23521125 - MLT1J LTR MaLR -52 459 2 2109 4 0 28 chr4 160769271 160769520 -23519142 + L1PA3 LINE L1 5909 6150 -5 1415 200 64 0 chr4 160769523 160769818 -23518844 - MER58B DNA MER1_type -23 318 5 23 0 0 0 chr4 160770285 160770308 -23518354 + AT_rich Low_complexity Low_complexity 1 23 0 1817 144 97 3 chr4 160775012 160775351 -23513311 + MER93b LTR ERV1 1 371 -2 2386 65 0 3 chr4 160775412 160775706 -23512956 + AluY SINE Alu 1 293 -18 406 335 61 6 chr4 160775842 160776006 -23512656 + MER5B DNA MER1_type 1 173 -5 798 225 6 11 chr4 160776029 160776207 -23512455 + MER5B DNA MER1_type 1 177 -1 194 277 96 0 chr4 160776763 160776846 -23511816 - MIR SINE MIR -60 148 58 1795 147 3 14 chr4 160777719 160778011 -23510651 + AluJb SINE Alu 1 289 -23 333 0 0 0 chr4 160778012 160778049 -23510613 + (CA)n Simple_repeat Simple_repeat 2 38 0 214 244 12 35 chr4 160779250 160779336 -23509326 + GA-rich Low_complexity Low_complexity 2 85 0 320 324 164 27 chr4 160780421 160780866 -23507796 + L2 LINE L2 2223 2728 -586 722 234 49 22 chr4 160781176 160781360 -23507302 + MER5A DNA MER1_type 1 189 0 197 302 78 31 chr4 160781582 160781711 -23506951 + L2 LINE L2 3136 3270 -2 195 328 202 17 chr4 160782728 160782847 -23505815 + L2 LINE L2 3121 3261 -11 336 331 87 23 chr4 160782897 160782956 -23505706 + MIR3 SINE MIR 26 80 -128 1645 136 33 47 chr4 160782956 160783257 -23505405 - AluJb SINE Alu -15 297 1 336 331 87 23 chr4 160783257 160783369 -23505293 + MIR3 SINE MIR 80 208 0 234 89 339 0 chr4 160783844 160783900 -23504762 - MIR3 SINE MIR -9 199 125 233 243 180 36 chr4 160784523 160784634 -23504028 - MIR SINE MIR 0 262 136 1993 130 3 7 chr4 160784676 160784995 -23503667 + AluSx SINE Alu 1 318 0 30 27 0 0 chr4 160785657 160785694 -23502968 + AT_rich Low_complexity Low_complexity 1 37 0 299 340 89 21 chr4 160787541 160787732 -23500930 - L2 LINE L2 -222 3050 2847 1063 202 34 0 chr4 160787945 160788153 -23500509 - MER20 DNA MER1_type 0 219 5 240 274 142 9 chr4 160789670 160789783 -23498879 + MER117 DNA MER1_type 5 132 -65 223 356 102 8 chr4 160789837 160789955 -23498707 - L2 LINE L2 -251 3021 2893 233 29 29 0 chr4 160790290 160790324 -23498338 + (TA)n Simple_repeat Simple_repeat 1 35 0 5899 207 75 18 chr4 160790332 160793040 -23495622 - L1MC2 LINE L1 -25 6319 3455 554 207 89 85 chr4 160795992 160796262 -23492400 - MER33 DNA MER1_type 0 324 54 362 211 193 37 chr4 160800060 160800129 -23488533 - REP3 LTR ERV -21 541 484 1725 157 71 9 chr4 160800129 160800453 -23488209 + MER2 DNA MER2_type 1 344 0 362 211 193 37 chr4 160800453 160800544 -23488118 - REP3 LTR ERV -78 484 356 432 227 59 17 chr4 160800994 160801113 -23487549 - REP3 LTR ERV -266 296 173 426 311 34 71 chr4 160801247 160801485 -23487177 - L2 LINE L2 -655 2659 2431 521 337 233 25 chr4 160801601 160802517 -23486145 - L2 LINE L2 -1892 1422 317 530 197 30 116 chr4 160802596 160802689 -23485973 + MER58C DNA MER1_type 2 101 -2319 2111 115 14 0 chr4 160802689 160802977 -23485685 - AluSx SINE Alu -20 292 1 530 197 30 116 chr4 160802977 160803116 -23485546 + MER58C DNA MER1_type 101 214 -1 23 0 0 0 chr4 160803753 160803776 -23484886 + AT_rich Low_complexity Low_complexity 1 23 0 810 259 68 8 chr4 160805755 160806006 -23482656 - L1P LINE L1 -851 5295 5030 1603 153 31 7 chr4 160806009 160806303 -23482359 + L1PA16 LINE L1 5866 6166 0 1572 67 5 0 chr4 160807080 160807273 -23481389 + AluYb8 SINE Alu 1 194 -124 705 364 66 27 chr4 160807861 160808664 -23479998 + L2 LINE L2 2226 3062 -210 315 236 180 11 chr4 160809353 160809442 -23479220 - MIR SINE MIR -87 175 72 200 217 0 50 chr4 160809887 160809947 -23478715 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 316 365 105 35 chr4 160810719 160811004 -23477658 - L2 LINE L2 0 3272 2968 1421 203 0 47 chr4 160811165 160811488 -23477174 - AluJo SINE Alu 0 309 1 1589 189 64 136 chr4 160811513 160812124 -23476538 + L1ME1 LINE L1 5204 5821 -513 589 251 126 0 chr4 160812124 160812323 -23476339 - MER58A DNA MER1_type 0 224 1 1589 189 64 136 chr4 160812323 160812802 -23475860 + L1ME1 LINE L1 5821 6333 -1 811 234 113 9 chr4 160813390 160813621 -23475041 + MLT1F1 LTR MaLR 313 567 0 413 257 87 59 chr4 160814297 160814550 -23474112 - MER113 DNA MER1_type? -24 497 238 608 261 43 37 chr4 160814613 160814801 -23473861 + MER5A DNA MER1_type 1 189 0 248 281 0 0 chr4 160814855 160814912 -23473750 - MER113 DNA MER1_type? -464 57 1 950 283 83 33 chr4 160815240 160815744 -23472918 + L2 LINE L2 2066 3241 -72 859 272 148 24 chr4 160816661 160817070 -23471592 - MLT1J LTR MaLR -26 424 8 232 331 116 41 chr4 160817183 160817488 -23471174 + L2 LINE L2 2656 2981 -291 1597 241 85 62 chr4 160817839 160818218 -23470444 + MLT1E LTR MaLR 3 401 -192 1719 195 0 3 chr4 160818218 160818525 -23470137 + AluSx SINE Alu 1 306 -6 1597 241 85 62 chr4 160818525 160818723 -23469939 + MLT1E LTR MaLR 401 593 0 2069 144 18 0 chr4 160819782 160820122 -23468540 - MER7A DNA MER2_type 0 346 3 412 335 141 31 chr4 160820960 160821187 -23467475 - L2 LINE L2 -21 3251 3000 2211 135 0 0 chr4 160822506 160822817 -23465845 + AluSx SINE Alu 1 311 -1 767 223 150 7 chr4 160823169 160823469 -23465193 - MER2 DNA MER2_type 0 344 2 318 384 55 0 chr4 160823870 160824034 -23464628 + L1MC4a LINE L1 5420 5592 -2216 1103 239 49 28 chr4 160824035 160824319 -23464343 + AluJo SINE Alu 1 290 -12 205 151 19 57 chr4 160824329 160824382 -23464280 + A-rich Low_complexity Low_complexity 3 53 0 2598 47 0 0 chr4 160824407 160824707 -23463955 + AluY SINE Alu 1 300 -11 520 251 137 32 chr4 160824708 160825023 -23463639 + L1MC4a LINE L1 5612 5959 -1849 1622 207 102 46 chr4 160825132 160825610 -23463052 + MLT1D LTR MaLR 1 505 0 833 123 0 0 chr4 160826042 160826156 -23462506 + AluSq/x SINE Alu 1 114 -199 1820 100 0 0 chr4 160826156 160826395 -23462267 + AluSq SINE Alu 61 299 -14 502 164 262 0 chr4 160826628 160826750 -23461912 - MIR SINE MIR -21 241 88 29 70 0 0 chr4 160827317 160827374 -23461288 + AT_rich Low_complexity Low_complexity 1 57 0 318 50 0 0 chr4 160828782 160828822 -23459840 + (CCCTG)n Simple_repeat Simple_repeat 3 42 0 200 222 0 16 chr4 160828831 160828894 -23459768 + CT-rich Low_complexity Low_complexity 3 64 0 1636 52 0 82 chr4 160828894 160829126 -23459536 - AluSq SINE Alu -100 213 1 481 239 301 16 chr4 160829262 160829568 -23459094 - L2 LINE L2 -6 3307 2915 1231 172 136 32 chr4 160829571 160829997 -23458665 - MER51A LTR ERV1 0 634 1 1799 133 75 33 chr4 160830172 160830504 -23458158 - MER7A DNA MER2_type 0 346 3 194 91 30 0 chr4 160831149 160831182 -23457480 + (TG)n Simple_repeat Simple_repeat 1 34 0 346 237 97 88 chr4 160831218 160831446 -23457216 + L1MEc LINE L1 2032 2261 -4135 1303 300 72 30 chr4 160831451 160832468 -23456194 + L1MEc LINE L1 2237 3296 -2919 1993 137 7 23 chr4 160832514 160832814 -23455848 + AluSx SINE Alu 3 297 -15 203 143 0 24 chr4 160832841 160832883 -23455779 + (GAAAA)n Simple_repeat Simple_repeat 3 43 0 * 288 154 0 0 chr4 160832874 160832926 -23455736 + GA-rich Low_complexity Low_complexity 4 55 0 334 312 57 19 chr4 160832973 160833130 -23455532 + L1ME3A LINE L1 5561 5723 -447 412 227 61 0 chr4 160833154 160833286 -23455376 + L1ME3A LINE L1 5808 5947 -223 320 265 85 101 chr4 160833672 160833840 -23454822 - L1MEd LINE L1 -4974 1145 979 2492 71 0 3 chr4 160833840 160834149 -23454513 - AluY SINE Alu -3 308 1 320 265 85 101 chr4 160834149 160834169 -23454493 - L1MEd LINE L1 -5140 979 960 25 31 0 0 chr4 160834227 160834259 -23454403 + AT_rich Low_complexity Low_complexity 1 32 0 1601 122 52 104 chr4 160834423 160834807 -23453855 + THE1B LTR MaLR 1 364 0 9130 133 30 43 chr4 160834810 160836408 -23452254 + THE1C-int LTR MaLR 4 1580 0 1722 189 40 27 chr4 160836408 160836778 -23451884 + THE1C LTR MaLR 1 375 0 1410 175 71 33 chr4 160837489 160837855 -23450807 + LTR55 LTR ERV 1 380 -168 1248 102 79 94 chr4 160838538 160838804 -23449858 + MLT1C LTR MaLR 1 262 -205 1417 168 22 119 chr4 160838804 160839174 -23449488 + MLT1B LTR MaLR 1 334 -56 2076 81 25 0 chr4 160839274 160839557 -23449105 + L1PA13 LINE L1 5874 6163 0 21 0 0 0 chr4 160839568 160839589 -23449073 + AT_rich Low_complexity Low_complexity 1 21 0 599 257 68 40 chr4 160840001 160840223 -23448439 + MIR SINE MIR 2 229 -33 668 286 83 26 chr4 160840745 160841165 -23447497 - MLT1J1 LTR MaLR -2 444 1 234 352 56 56 chr4 160842305 160842377 -23446285 - L2 LINE L2 -15 3257 3183 2197 113 10 0 chr4 160842377 160842677 -23445985 - AluY SINE Alu -8 303 1 234 352 56 56 chr4 160842677 160842746 -23445916 - L2 LINE L2 -88 3184 3116 228 163 0 0 chr4 160843465 160843508 -23445154 + (TATG)n Simple_repeat Simple_repeat 2 44 0 758 298 43 20 chr4 160843579 160843834 -23444828 - L2 LINE L2 -504 2810 2550 2774 177 39 2 chr4 160844031 160844517 -23444145 + LTR26E LTR ERV1 8 511 -111 2273 124 8 8 chr4 160844517 160844872 -23443790 - THE1A LTR MaLR 0 355 1 10278 94 6 17 chr4 160844872 160846292 -23442370 - THE1A-int LTR MaLR 0 1580 177 4966 16 0 0 chr4 160846292 160846859 -23441803 - L1PA2 LINE L1 -4 6151 5585 2555 23 0 0 chr4 160846859 160847311 -23441351 + L1PA2 LINE L1 5105 5556 -599 1422 47 0 26 chr4 160847306 160847498 -23441164 - THE1A-int LTR MaLR -1393 187 1 * 2160 144 8 8 chr4 160847498 160847853 -23440809 - THE1A LTR MaLR 0 355 1 452 221 53 0 chr4 160847859 160847954 -23440708 + LTR26B LTR ERV1 432 531 0 348 278 56 16 chr4 160848043 160848169 -23440493 + MLT1J2 LTR MaLR 31 161 -289 230 111 0 0 chr4 160848246 160848282 -23440380 - L1MA4A LINE L1 -329 5974 5939 23 33 0 0 chr4 160848288 160848318 -23440344 + AT_rich Low_complexity Low_complexity 1 30 0 350 267 68 50 chr4 160848598 160848765 -23439897 - MIR SINE MIR -39 169 23 14562 36 3 1 chr4 160849216 160851005 -23437657 + L1P LINE L1 2746 4539 -1607 2228 57 0 18 chr4 160851077 160851360 -23437302 + AluY SINE Alu 33 310 -1 231 36 0 0 chr4 160852580 160852608 -23436054 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 213 189 0 0 chr4 160852608 160852645 -23436017 - L2 LINE L2 -13 3300 3264 36 40 0 0 chr4 160853850 160853900 -23434762 + AT_rich Low_complexity Low_complexity 1 50 0 27 49 0 0 chr4 160854740 160854781 -23433881 + AT_rich Low_complexity Low_complexity 1 41 0 249 250 60 36 chr4 160855386 160855470 -23433192 - MER110A LTR ERV1 -3 465 380 314 163 51 7 chr4 160855480 160855547 -23433115 - MLT1C LTR MaLR -10 450 314 320 244 215 0 chr4 160855548 160855683 -23432979 - MER110A LTR ERV1 -304 164 1 3246 166 72 9 chr4 160856819 160857487 -23431175 - MER67C LTR ERV1 0 710 1 2175 185 53 9 chr4 160857989 160858448 -23430214 + MER31A LTR ERV1 1 540 -3 258 342 77 0 chr4 160858524 160858641 -23430021 + MIR SINE MIR 123 248 -14 34 42 0 0 chr4 160858823 160858871 -23429791 + AT_rich Low_complexity Low_complexity 1 48 0 3917 143 36 9 chr4 160859605 160860262 -23428400 - MER39 LTR ERV1 -30 677 3 6451 74 17 6 chr4 160860346 160861436 -23427226 - L1PA8 LINE L1 -18 6154 5040 4307 192 62 27 chr4 160861964 160862814 -23425848 - Tigger6a DNA MER2_type -514 1083 145 2504 42 3 23 chr4 160862814 160863124 -23425538 + AluY SINE Alu 1 304 -7 4307 192 62 27 chr4 160863124 160863275 -23425387 - Tigger6a DNA MER2_type -1452 145 1 1541 171 22 48 chr4 160863361 160863676 -23424986 + AluJo SINE Alu 1 307 -5 340 301 20 48 chr4 160863769 160863915 -23424747 + L2 LINE L2 3172 3313 0 26 64 0 0 chr4 160864775 160864822 -23423840 + AT_rich Low_complexity Low_complexity 1 47 0 264 239 35 50 chr4 160864932 160865018 -23423644 - L1MA9 LINE L1 -113 6178 6104 3673 178 36 17 chr4 160865018 160865710 -23422952 + MER44D DNA MER2_type 1 705 0 264 239 35 50 chr4 160865710 160865747 -23422915 - L1MA9 LINE L1 -187 6104 6068 21 0 0 0 chr4 160867088 160867109 -23421553 + AT_rich Low_complexity Low_complexity 1 21 0 1528 203 189 12 chr4 160867634 160868062 -23420600 - MLT1D LTR MaLR 0 505 2 1433 285 91 69 chr4 160868330 160869152 -23419510 + L2 LINE L2 1935 2774 -540 190 330 37 46 chr4 160869191 160869300 -23419362 - L2 LINE L2 -2892 422 315 21 36 0 0 chr4 160869799 160869827 -23418835 + AT_rich Low_complexity Low_complexity 1 28 0 1880 32 0 0 chr4 160870372 160870589 -23418073 - L1P3 LINE L1 -446 5708 5492 1695 102 0 4 chr4 160870589 160870825 -23417837 + L1PA7 LINE L1 5909 6151 -3 582 228 0 37 chr4 160871169 160871305 -23417357 - MER45A DNA AcHobo -1 177 47 2383 56 10 10 chr4 160872097 160872402 -23416260 + AluY SINE Alu 1 305 -6 22 70 0 0 chr4 160872688 160872731 -23415931 + AT_rich Low_complexity Low_complexity 1 43 0 415 266 75 79 chr4 160872873 160873125 -23415537 + MER31-int LTR ERV1 2816 3066 -1870 238 287 0 99 chr4 160873307 160873408 -23415254 + MER5A DNA MER1_type 1 102 -87 891 271 45 91 chr4 160873926 160874510 -23414152 + MER31-int LTR ERV1 3330 3886 -1050 1066 139 15 3 chr4 160874830 160875078 -23413584 + AluSc SINE Alu 1 313 0 587 148 0 96 chr4 160876755 160876870 -23411792 - Tigger1 DNA MER2_type -2313 105 2 215 59 0 29 chr4 160876874 160876908 -23411754 + (TATAA)n Simple_repeat Simple_repeat 5 37 0 208 250 39 19 chr4 160876937 160876989 -23411673 - MIR SINE MIR -173 89 37 225 208 52 13 chr4 160877209 160877286 -23411376 + MER116 DNA Mariner 1 80 0 5334 143 16 13 chr4 160877335 160878126 -23410536 + Tigger1 DNA MER2_type 77 873 -1545 1959 108 0 0 chr4 160878126 160878386 -23410276 + AluSc SINE Alu 36 295 -14 5334 143 16 13 chr4 160878386 160878454 -23410208 + Tigger1 DNA MER2_type 873 939 -1479 9223 205 20 13 chr4 160878456 160880499 -23408163 - L1 LINE L1 -1656 4490 2434 9168 139 9 13 chr4 160880499 160881043 -23407619 + Tigger1 DNA MER2_type 938 1483 -935 2359 80 0 0 chr4 160881043 160881343 -23407319 + AluY SINE Alu 1 300 -11 9168 139 9 13 chr4 160881343 160882285 -23406377 + Tigger1 DNA MER2_type 1483 2418 0 537 240 55 49 chr4 160882315 160882498 -23406164 + MIR SINE MIR 79 262 0 230 292 0 22 chr4 160883243 160883332 -23405330 - L1ME LINE L1 -302 5819 5733 1746 96 4 31 chr4 160883352 160883613 -23405049 + AluSx SINE Alu 46 299 -13 321 161 35 0 chr4 160883623 160883710 -23404952 + (TA)n Simple_repeat Simple_repeat 1 90 0 491 309 83 34 chr4 160883719 160884104 -23404558 - L1ME LINE L1 -2149 5659 5256 2086 126 0 0 chr4 160884206 160884516 -23404146 + AluY SINE Alu 1 310 -1 419 311 84 34 chr4 160885004 160885242 -23403420 + MIR SINE MIR 13 262 0 396 239 123 18 chr4 160885739 160885902 -23402760 - MLT1K LTR MaLR 0 588 409 594 82 0 0 chr4 160885923 160886008 -23402654 + (TTCC)n Simple_repeat Simple_repeat 1 85 0 1696 178 3 17 chr4 160886009 160886302 -23402360 - AluJb SINE Alu -23 289 1 467 324 90 50 chr4 160886331 160886394 -23402268 - MLT1K LTR MaLR -228 360 301 216 0 0 0 chr4 160886394 160886418 -23402244 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 467 324 90 50 chr4 160886418 160886653 -23402009 - MLT1K LTR MaLR -287 301 50 462 282 8 0 chr4 160886654 160886778 -23401884 - L1ME LINE L1 -644 5518 5394 1221 268 113 49 chr4 160886843 160887702 -23400960 - L1ME LINE L1 -758 5388 4475 231 200 22 0 chr4 160887762 160887807 -23400855 - MER20 DNA MER1_type 0 219 174 228 315 74 34 chr4 160887810 160887959 -23400703 + L1M4 LINE L1 3941 4095 -2051 1543 262 69 29 chr4 160887960 160888513 -23400149 + MER90 LTR ERV1 1 575 0 206 254 110 68 chr4 160888552 160888652 -23400010 - L2 LINE L2 -2888 426 319 2014 111 5 116 chr4 160888652 160888984 -23399678 + THE1C LTR MaLR 1 278 -97 2053 118 7 0 chr4 160888984 160889272 -23399390 + AluSx SINE Alu 1 290 -22 2014 111 5 116 chr4 160889272 160889361 -23399301 + THE1C LTR MaLR 278 375 0 206 254 110 68 chr4 160889361 160889378 -23399284 - L2 LINE L2 -2995 319 304 327 348 56 6 chr4 160889591 160889769 -23398893 - L2 LINE L2 -3085 229 43 231 200 22 0 chr4 160890067 160890112 -23398550 - MER20 DNA MER1_type 0 219 174 1437 200 33 17 chr4 160890648 160890948 -23397714 - AluJb SINE Alu -7 305 1 185 374 101 7 chr4 160890953 160891092 -23397570 + MIR3 SINE MIR 49 200 -8 2280 203 53 11 chr4 160892462 160892936 -23395726 - MLT1D LTR MaLR 0 505 12 776 209 198 4 chr4 160892943 160893201 -23395461 - Charlie4a DNA MER1_type -25 483 176 182 328 107 41 chr4 160895085 160895207 -23393455 - L2 LINE L2 -5 3267 3138 1041 254 27 16 chr4 160895463 160895719 -23392943 - MIR SINE MIR 0 262 4 276 30 0 0 chr4 160896679 160896712 -23391950 + (CA)n Simple_repeat Simple_repeat 2 34 0 1374 192 73 30 chr4 160896788 160897017 -23391645 + MER2 DNA MER2_type 1 250 -95 772 194 0 0 chr4 160897017 160897146 -23391516 - FLAM_C SINE Alu -2 131 3 1374 192 73 30 chr4 160897146 160897244 -23391418 + MER2 DNA MER2_type 250 342 -3 351 348 48 16 chr4 160897473 160897660 -23391002 + MIR3 SINE MIR 7 199 -9 3145 32 3 0 chr4 160899246 160899622 -23389040 - L1PA4 LINE L1 -26 6129 5753 1240 42 6 12 chr4 160899615 160899781 -23388881 + L1P LINE L1 4366 4530 -1616 * 777 131 23 8 chr4 160999790 160999920 -23288742 + HERVH LTR ERV1 3159 3290 -4423 * 2801 121 7 2 chr4 160999919 161000348 -23288314 + HERVH LTR ERV1 3500 3930 -3783 424 143 63 0 chr4 161000352 161000415 -23288247 + HERVH LTR ERV1 5753 5819 -1894 2493 97 46 0 chr4 161000415 161000788 -23287874 + HERVH LTR ERV1 7324 7713 0 900 90 101 13 chr4 161000788 161000946 -23287716 + LTR7 LTR ERV1 1 218 -232 2069 200 81 81 chr4 161001188 161001475 -23287187 - LTR8A LTR ERV1 -98 629 343 2158 126 0 7 chr4 161001475 161001777 -23286885 - AluSx SINE Alu -12 300 1 2069 200 81 81 chr4 161001777 161002085 -23286577 - LTR8A LTR ERV1 -383 344 34 2427 98 0 0 chr4 161002111 161002417 -23286245 - AluSq SINE Alu -7 306 1 369 277 96 27 chr4 161002437 161002697 -23285965 - L1ME LINE L1 -627 5535 5258 306 231 58 48 chr4 161002723 161002827 -23285835 - MER34C LTR ERV1 -7 578 474 356 319 0 21 chr4 161003256 161003400 -23285262 + GA-rich Low_complexity Low_complexity 2 142 0 555 214 97 0 chr4 161003855 161004000 -23284662 + MIR SINE MIR 71 229 -33 200 275 0 0 chr4 161004002 161004071 -23284591 + T-rich Low_complexity Low_complexity 2 70 0 1049 199 11 0 chr4 161004137 161004313 -23284349 - LTR19C LTR ERV1 0 779 602 * 2010 120 21 3 chr4 161004310 161004601 -23284061 - LTR19C LTR ERV1 -483 296 1 1096 211 16 45 chr4 161004604 161004869 -23283793 - HUERS-P3 LTR ERV1 0 8919 7157 332 278 24 24 chr4 161005002 161005140 -23283522 - HERV9 LTR ERV1 -445 7954 4283 14556 149 28 3 chr4 161006263 161008527 -23280135 - HERV9 LTR ERV1 -2028 6891 4571 8901 144 23 1 chr4 161008526 161009864 -23278798 - HERV9 LTR ERV1 -4491 4428 3061 * 1346 132 0 0 chr4 161009860 161010049 -23278613 - HERV9 LTR ERV1 -6246 2673 2485 * 2617 120 36 14 chr4 161010149 161010567 -23278095 - LTR19C LTR ERV1 -352 427 1 745 295 118 23 chr4 161011520 161012081 -23276581 - L2 LINE L2 0 3313 2707 2690 166 122 2 chr4 161012199 161012706 -23275956 - LTR69 LTR ERVL -17 571 4 280 278 11 40 chr4 161013148 161013324 -23275338 + GA-rich Low_complexity Low_complexity 4 174 0 331 154 31 0 chr4 161013568 161013633 -23275029 - MLT1A1 LTR MaLR -213 152 86 * 1155 173 22 27 chr4 161013625 161013850 -23274812 + MER2 DNA MER2_type 121 344 -1 13659 155 54 11 chr4 161013971 161016289 -23272373 + Tigger1 DNA MER2_type 1 2418 0 2273 110 0 0 chr4 161016314 161016606 -23272056 - AluSx SINE Alu -20 292 1 270 227 0 15 chr4 161016763 161016829 -23271833 + MARNA DNA Mariner 380 444 -142 4264 122 0 0 chr4 161017029 161017630 -23271032 + HERVH LTR ERV1 4549 5149 -2564 2521 139 26 5 chr4 161017621 161018039 -23270623 + HERVH LTR ERV1 5590 6016 -1697 * 3637 98 14 35 chr4 161018032 161018601 -23270061 + HERVH LTR ERV1 7157 7713 0 2705 115 51 16 chr4 161018601 161019036 -23269626 + LTR7 LTR ERV1 1 450 0 25 0 0 0 chr4 161020842 161020867 -23267795 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr4 161021640 161021671 -23266991 + AT_rich Low_complexity Low_complexity 1 31 0 233 196 0 0 chr4 161021912 161021958 -23266704 + G-rich Low_complexity Low_complexity 2 47 0 180 77 0 0 chr4 161022020 161022046 -23266616 + (TGGGGG)n Simple_repeat Simple_repeat 5 30 0 2743 234 151 37 chr4 161022499 161023434 -23265228 + L1MC/D LINE L1 321 1361 -5179 1743 224 0 90 chr4 161023433 161023865 -23264797 + L1MC/D LINE L1 5077 5447 -1093 * 1941 88 42 25 chr4 161023865 161024148 -23264514 - AluSg SINE Alu -22 288 1 1743 224 0 90 chr4 161024148 161024283 -23264379 + L1MC/D LINE L1 5447 5593 -947 556 150 18 44 chr4 161024289 161024402 -23264260 + FRAM SINE Alu 67 176 0 372 264 0 0 chr4 161024433 161024539 -23264123 + L1MD1 LINE L1 4638 4743 -1403 * 4099 208 33 21 chr4 161024537 161025712 -23262950 + L1MD1 LINE L1 4964 6160 -82 14694 91 16 27 chr4 161025814 161028542 -23260120 - HERVH LTR ERV1 -4869 2844 1 1523 143 116 81 chr4 161028544 161028977 -23259685 - LTR7 LTR ERV1 -2 448 1 329 383 62 48 chr4 161029183 161029541 -23259121 - L2 LINE L2 -1 3271 2909 1822 155 30 10 chr4 161029886 161030190 -23258472 + AluJo SINE Alu 3 312 0 210 228 8 16 chr4 161030916 161031039 -23257623 + CT-rich Low_complexity Low_complexity 1 122 0 201 182 0 23 chr4 161031125 161031169 -23257493 + CT-rich Low_complexity Low_complexity 1 43 0 419 278 111 17 chr4 161031580 161031814 -23256848 + L1MC/D LINE L1 5890 6145 -2057 1536 278 35 14 chr4 161032323 161032841 -23255821 - MER90 LTR ERV1 -12 563 35 303 309 130 5 chr4 161032854 161033061 -23255601 + L2 LINE L2 2417 2649 -665 246 245 0 0 chr4 161033138 161033191 -23255471 + MER5B DNA MER1_type 2 54 -124 1561 210 19 41 chr4 161033228 161033410 -23255252 - L1MC1 LINE L1 -51 6282 6110 1943 189 17 8 chr4 161033410 161033770 -23254892 + MLT1A1 LTR MaLR 1 363 -2 1561 210 19 41 chr4 161033770 161033954 -23254708 - L1MC1 LINE L1 -223 6110 5924 2180 132 330 10 chr4 161033956 161034472 -23254190 - Tigger3b DNA MER2_type -1 1231 551 1430 136 11 33 chr4 161034464 161034737 -23253925 - Tigger3b DNA MER2_type -833 398 132 * 1430 321 43 10 chr4 161034842 161035422 -23253240 - ERVL LTR ERVL -3902 1862 1264 1781 200 123 58 chr4 161035427 161035884 -23252778 - Charlie1a DNA MER1_type -1311 1450 933 1915 154 20 0 chr4 161035884 161036190 -23252472 - AluJb SINE Alu 0 312 1 1781 200 123 58 chr4 161036190 161036416 -23252246 - Charlie1a DNA MER1_type -1828 933 723 1235 246 69 9 chr4 161036453 161036787 -23251875 - Charlie1a DNA MER1_type -1101 354 1 2549 189 23 19 chr4 161036874 161037399 -23251263 - MER67A LTR ERV1 -16 527 1 292 283 65 51 chr4 161037413 161037551 -23251111 - ERVL LTR ERVL -4561 1203 1064 362 282 12 0 chr4 161037560 161037645 -23251017 - LTR39 LTR ERV1 0 783 698 1711 151 0 45 chr4 161037645 161037976 -23250686 - L1P LINE L1 -917 5229 4914 1774 96 16 0 chr4 161037976 161038223 -23250439 + L1PA13 LINE L1 5909 6163 0 2402 180 62 19 chr4 161038226 161038692 -23249970 - LTR39 LTR ERV1 -82 701 216 1320 211 4 19 chr4 161038692 161038962 -23249700 - AluJo SINE Alu -3 309 44 1261 177 4 13 chr4 161038962 161039188 -23249474 - LTR39 LTR ERV1 -559 224 1 3598 221 37 33 chr4 161039329 161040170 -23248492 - MER21B LTR ERV1 -19 844 1 606 321 52 12 chr4 161040171 161040641 -23248021 - ERVL LTR ERVL -4824 940 387 22 0 0 0 chr4 161041468 161041490 -23247172 + AT_rich Low_complexity Low_complexity 1 22 0 1044 92 8 0 chr4 161041595 161041726 -23246936 - AluSg/x SINE Alu -63 249 118 26 64 0 0 chr4 161041923 161041970 -23246692 + AT_rich Low_complexity Low_complexity 1 47 0 1978 125 7 20 chr4 161043274 161043579 -23245083 + AluSq SINE Alu 1 301 -12 605 114 6 171 chr4 161043953 161044111 -23244551 + FLAM_C SINE Alu 1 132 -1 32 43 0 0 chr4 161044179 161044225 -23244437 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr4 161044624 161044646 -23244016 + AT_rich Low_complexity Low_complexity 1 22 0 340 260 0 52 chr4 161044791 161044887 -23243775 - L2 LINE L2 -1987 1327 1237 199 393 51 8 chr4 161045335 161045452 -23243210 - L2 LINE L2 -12 3301 3180 22 35 0 0 chr4 161047212 161047241 -23241421 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr4 161047257 161047286 -23241376 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 161048273 161048301 -23240361 + AT_rich Low_complexity Low_complexity 1 28 0 2020 104 7 0 chr4 161048849 161049119 -23239543 + AluSq SINE Alu 1 272 -41 554 286 157 30 chr4 161049173 161049599 -23239063 - L1ME4a LINE L1 -142 5979 5500 480 275 71 50 chr4 161051994 161052176 -23236486 - MIR SINE MIR -70 192 7 185 256 13 90 chr4 161052429 161052507 -23236155 + MIR SINE MIR 191 262 0 2219 83 3 3 chr4 161053089 161053378 -23235284 - AluSg SINE Alu -21 289 1 233 232 128 8 chr4 161054779 161054904 -23233758 - L2 LINE L2 -1927 1387 1248 249 318 94 50 chr4 161055110 161055387 -23233275 - L2 LINE L2 -895 2419 2131 225 191 0 0 chr4 161056014 161056061 -23232601 + CT-rich Low_complexity Low_complexity 2 48 0 239 281 37 37 chr4 161056300 161056382 -23232280 + MIR3 SINE MIR 118 199 -9 235 250 242 61 chr4 161057655 161057787 -23230875 - L2 LINE L2 0 3313 3158 2116 116 3 16 chr4 161058878 161059189 -23229473 - AluSq SINE Alu -4 309 3 198 0 0 0 chr4 161059341 161059363 -23229299 + (T)n Simple_repeat Simple_repeat 1 22 0 261 0 0 0 chr4 161060005 161060034 -23228628 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 407 99 14 14 chr4 161063773 161063844 -23224818 + MER3 DNA MER1_type 95 165 -44 40 0 0 0 chr4 161064150 161064190 -23224472 + AT_rich Low_complexity Low_complexity 1 40 0 248 272 74 74 chr4 161064918 161064999 -23223663 - L2 LINE L2 -5 3308 3228 2357 91 10 0 chr4 161065545 161065843 -23222819 - AluSx SINE Alu -11 301 1 6412 123 189 89 chr4 161066219 161067810 -23220852 - pTR5 LTR ERV1 0 2438 689 23 0 0 0 chr4 161068185 161068208 -23220454 + AT_rich Low_complexity Low_complexity 1 23 0 573 338 72 58 chr4 161068668 161069310 -23219352 + L1MC/D LINE L1 4629 5267 -879 24 0 0 0 chr4 161069317 161069341 -23219321 + AT_rich Low_complexity Low_complexity 1 24 0 285 277 71 13 chr4 161069353 161069508 -23219154 + L1MC/D LINE L1 5317 5480 -2328 301 241 7 106 chr4 161070036 161070177 -23218485 + HAL1b LINE L1 1193 1319 -29 21 71 0 0 chr4 161072278 161072320 -23216342 + AT_rich Low_complexity Low_complexity 1 42 0 1405 222 94 42 chr4 161072368 161072845 -23215817 - MLT1D LTR MaLR -2 503 2 203 263 139 80 chr4 161073053 161073190 -23215472 - MIR3 SINE MIR -5 203 59 725 142 50 0 chr4 161073668 161073788 -23214874 - FLAM_C SINE Alu -17 126 1 187 352 56 40 chr4 161074885 161075010 -23213652 - L2 LINE L2 -6 3266 3140 215 302 0 47 chr4 161075397 161075483 -23213179 + L2 LINE L2 3187 3268 -4 657 215 19 0 chr4 161076632 161076790 -23211872 - L1 LINE L1 -1862 4284 4124 518 220 0 0 chr4 161076790 161076899 -23211763 + MER101 LTR ERV1 364 472 -2 2157 117 3 10 chr4 161076971 161077303 -23211359 - AluSg SINE Alu 0 310 1 375 291 64 0 chr4 161077435 161077576 -23211086 - MER103 DNA DNA -3 163 14 2860 148 35 4 chr4 161077762 161078243 -23210419 - LOR1a LTR ERV1 -1 496 1 22 56 0 0 chr4 161078448 161078484 -23210178 + AT_rich Low_complexity Low_complexity 1 36 0 371 242 67 33 chr4 161079026 161079146 -23209516 + MLT1J LTR MaLR 86 209 -302 674 201 139 82 chr4 161079283 161079686 -23208976 - LTR37A LTR ERV1 0 426 1 494 258 64 24 chr4 161079721 161080016 -23208646 + Charlie4 DNA MER1_type 1655 1961 0 353 244 92 109 chr4 161081129 161081587 -23207075 + MLT1J2 LTR MaLR 1 450 0 1420 294 150 60 chr4 161081592 161083062 -23205600 - L2 LINE L2 -1000 2314 714 746 97 8 22 chr4 161083877 161084011 -23204651 + (TTCC)n Simple_repeat Simple_repeat 1 132 0 427 209 113 14 chr4 161085808 161086052 -23202610 + L1MEc LINE L1 2172 2418 -3797 1680 200 7 0 chr4 161086059 161086359 -23202303 + AluJb SINE Alu 1 302 -10 231 222 0 0 chr4 161086407 161086461 -23202201 + (TA)n Simple_repeat Simple_repeat 2 55 0 478 196 23 6 chr4 161086473 161086646 -23202016 + (TA)n Simple_repeat Simple_repeat 2 177 0 261 214 48 0 chr4 161086652 161086736 -23201926 + L1MC4 LINE L1 6614 6701 -1341 302 185 74 19 chr4 161086763 161086871 -23201791 + L1M4 LINE L1 4733 4846 -1300 1923 132 0 20 chr4 161086952 161087247 -23201415 + AluSg SINE Alu 1 289 -21 6440 37 23 2 chr4 161087250 161093211 -23195451 + L1PA3 LINE L1 1 6155 0 24 0 0 0 chr4 161093262 161093286 -23195376 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 161093320 161093341 -23195321 + AT_rich Low_complexity Low_complexity 1 21 0 637 284 92 19 chr4 161093723 161094134 -23194528 + L2 LINE L2 2717 3152 -161 2474 21 7 0 chr4 161094136 161094425 -23194237 - L1PA4 LINE L1 0 6155 5865 594 225 51 71 chr4 161094441 161094694 -23193968 - L2 LINE L2 -43 3270 3023 30 45 0 0 chr4 161095183 161095227 -23193435 + AT_rich Low_complexity Low_complexity 1 44 0 820 200 65 9 chr4 161095286 161095503 -23193159 - MLT1G LTR MaLR -4 586 361 611 290 62 18 chr4 161095536 161095808 -23192854 - MLT1G LTR MaLR -311 284 1 365 262 39 0 chr4 161095835 161095938 -23192724 - L2 LINE L2 -473 2841 2735 192 40 0 0 chr4 161095938 161095963 -23192699 + (T)n Simple_repeat Simple_repeat 1 25 0 291 336 34 34 chr4 161095963 161096109 -23192553 - MIR SINE MIR -10 252 107 618 263 203 12 chr4 161096341 161096592 -23192070 - L2 LINE L2 -544 2770 2472 23 54 0 0 chr4 161099296 161099333 -23189329 + AT_rich Low_complexity Low_complexity 1 37 0 856 245 95 34 chr4 161099658 161099952 -23188710 + L2 LINE L2 3002 3313 0 1953 164 0 13 chr4 161100300 161100611 -23188051 - AluJo SINE Alu -5 307 1 21 36 0 0 chr4 161101098 161101126 -23187536 + AT_rich Low_complexity Low_complexity 1 28 0 311 357 9 0 chr4 161101717 161101829 -23186833 + L3 LINE CR1 1011 1123 -454 264 258 25 31 chr4 161103124 161103287 -23185375 + L1MDa LINE L1 1296 1457 -5083 978 292 33 10 chr4 161103441 161103835 -23184827 + L1MCb LINE L1 350 752 -5293 4371 149 33 18 chr4 161103838 161104603 -23184059 + LTR19C LTR ERV1 4 779 0 2144 231 21 34 chr4 161104606 161105233 -23183429 + HUERS-P3 LTR ERV1 3 621 -8298 2752 212 23 8 chr4 161105235 161105834 -23182828 + HUERS-P3 LTR ERV1 843 1450 -7469 360 316 6 29 chr4 161105943 161106117 -23182545 + HUERS-P3 LTR ERV1 443 612 -6384 7390 183 12 10 chr4 161106185 161108283 -23180379 + HUERS-P3 LTR ERV1 891 3284 -5314 949 139 0 0 chr4 161108276 161108420 -23180242 + HUERS-P3 LTR ERV1 4539 4682 -4237 * 10481 153 28 23 chr4 161108421 161110326 -23178336 + HUERS-P3 LTR ERV1 4901 6816 -2103 2863 149 58 32 chr4 161110326 161111109 -23177553 + pTR5 LTR ERV1 743 2021 -417 268 247 0 0 chr4 161111113 161111190 -23177472 + LTR30 LTR ERV1 544 620 -102 1422 122 76 22 chr4 161111190 161111521 -23177141 + pTR5 LTR ERV1 281 2438 0 409 250 23 23 chr4 161111521 161111631 -23177031 + HUERS-P3 LTR ERV1 6826 6935 -1984 326 167 154 13 chr4 161111624 161111702 -23176960 + HUERS-P3 LTR ERV1 6874 6962 -1957 * 724 158 15 46 chr4 161111717 161111913 -23176749 + HUERS-P3 LTR ERV1 2383 4320 -560 1007 219 20 8 chr4 161112231 161112489 -23176173 + HUERS-P3 LTR ERV1 7162 8919 0 4031 142 45 29 chr4 161112491 161112628 -23176034 + LTR19C LTR ERV1 1 134 -645 1795 74 12 29 chr4 161112628 161112870 -23175792 - AluY SINE Alu -10 301 64 4031 142 45 29 chr4 161112870 161113492 -23175170 + LTR19C LTR ERV1 134 772 -7 424 254 8 8 chr4 161113529 161113655 -23175007 + L1MCb LINE L1 780 905 -5140 1750 197 32 53 chr4 161113748 161114332 -23174330 + L1MCb LINE L1 952 1523 -5041 672 272 113 27 chr4 161114386 161114757 -23173905 + Charlie7 DNA MER1_type 62 464 -2148 2341 109 3 0 chr4 161114853 161115164 -23173498 + AluSp SINE Alu 1 312 -1 209 117 0 117 chr4 161117548 161117608 -23171054 + (TTTTA)n Simple_repeat Simple_repeat 3 55 0 877 150 0 0 chr4 161117617 161117744 -23170918 - FLAM_C SINE Alu -4 129 3 702 215 37 0 chr4 161119249 161119412 -23169250 - MER3 DNA MER1_type -87 122 1 207 0 0 0 chr4 161120119 161120142 -23168520 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 588 227 16 0 chr4 161120595 161120723 -23167939 + AluJo SINE Alu 1 130 -172 756 87 17 35 chr4 161120723 161120838 -23167824 - AluSg/x SINE Alu -20 289 177 935 182 0 0 chr4 161120842 161121007 -23167655 + AluJo SINE Alu 129 293 -19 581 291 111 64 chr4 161121208 161121631 -23167031 - LTR16A LTR ERVL -1 449 7 255 157 0 0 chr4 161122343 161122394 -23166268 + (CA)n Simple_repeat Simple_repeat 2 52 0 1302 223 99 51 chr4 161123595 161124197 -23164465 - MLT1E2 LTR MaLR 0 626 1 2344 79 0 0 chr4 161124502 161124794 -23163868 - AluSg SINE Alu -18 292 1 1665 181 10 0 chr4 161124811 161125109 -23163553 - AluJb SINE Alu -11 301 1 707 303 59 20 chr4 161125221 161125630 -23163032 - L1M4 LINE L1 -1211 4935 4511 1883 123 91 3 chr4 161125630 161125915 -23162747 - MER4A LTR ERV1 0 664 355 990 69 92 86 chr4 161125931 161126105 -23162557 - MER4A LTR ERV1 -489 175 1 240 315 44 48 chr4 161126246 161126516 -23162146 - L1M4 LINE L1 -1785 4361 4093 763 156 16 0 chr4 161126517 161126639 -23162023 - MLT1B LTR MaLR 0 390 267 3189 231 111 8 chr4 161126642 161127401 -23161261 + MER21B LTR ERV1 1 837 -26 628 114 83 53 chr4 161127520 161127539 -23161123 - MLT1B LTR MaLR -254 136 119 1840 154 26 32 chr4 161127539 161127916 -23160746 - THE1C LTR MaLR 0 375 1 628 114 83 53 chr4 161127916 161128028 -23160634 - MLT1B LTR MaLR -271 119 1 974 177 83 91 chr4 161128131 161128186 -23160476 + LTR48 LTR ERV1 37 91 -696 2306 122 0 0 chr4 161128186 161128498 -23160164 + AluSx SINE Alu 1 312 0 974 177 83 91 chr4 161128498 161128707 -23159955 + LTR48 LTR ERV1 91 299 -488 189 0 0 0 chr4 161128807 161128828 -23159834 + (TA)n Simple_repeat Simple_repeat 2 22 0 6565 177 18 13 chr4 161128828 161130714 -23157948 - L1P5 LINE L1 -370 5781 3897 871 212 284 17 chr4 161131052 161131344 -23157318 - MLT1A2 LTR MaLR 0 374 5 891 309 65 46 chr4 161131363 161131797 -23156865 - MLT2F LTR ERVL -8 655 214 540 288 78 64 chr4 161132083 161132355 -23156307 - HAL1b LINE L1 -545 803 536 1095 59 5 43 chr4 161132355 161132542 -23156120 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1508 175 34 4 chr4 161132542 161132810 -23155852 - AluJb SINE Alu -35 277 2 540 288 78 64 chr4 161132810 161133113 -23155549 - HAL1b LINE L1 -811 537 219 25 51 0 0 chr4 161134273 161134312 -23154350 + AT_rich Low_complexity Low_complexity 1 39 0 1525 178 34 14 chr4 161134452 161134745 -23153917 - AluJo SINE Alu -13 299 1 2382 60 3 7 chr4 161135178 161135479 -23153183 + AluY SINE Alu 2 301 -10 631 185 8 0 chr4 161135490 161135620 -23153042 + L1MA5 LINE L1 6163 6293 -7 28 0 0 0 chr4 161135624 161135652 -23153010 + AT_rich Low_complexity Low_complexity 1 28 0 21516 112 16 10 chr4 161138034 161142198 -23146464 + L1PA8 LINE L1 1988 6170 -2 201 388 19 0 chr4 161143782 161143885 -23144777 - MIR SINE MIR -66 142 38 2260 116 0 0 chr4 161144402 161144704 -23143958 + AluSx SINE Alu 3 304 -8 180 0 0 0 chr4 161145807 161145827 -23142835 + (A)n Simple_repeat Simple_repeat 1 20 0 1778 83 0 0 chr4 161145838 161146066 -23142596 + AluSq SINE Alu 83 310 -3 988 191 16 0 chr4 161146083 161146266 -23142396 - MER20 DNA MER1_type -1 218 33 1416 145 17 4 chr4 161147782 161148016 -23140646 - Tigger7 DNA MER2_type -1 2490 2254 557 383 39 20 chr4 161148079 161148641 -23140021 + ERVL LTR ERVL 4189 4807 -889 401 350 24 27 chr4 161148783 161149077 -23139585 + ERVL LTR ERVL 5034 5326 -438 306 284 19 9 chr4 161149239 161149345 -23139317 + LTR16A LTR ERVL 6 111 -339 487 271 116 63 chr4 161149493 161149700 -23138962 + LTR16A LTR ERVL 221 438 -12 235 373 9 0 chr4 161151788 161151898 -23136764 - L2 LINE L2 -485 2829 2719 2298 135 35 30 chr4 161152214 161152764 -23135898 - MLT2A2 LTR ERVL 0 554 1 284 291 0 112 chr4 161154951 161155085 -23133577 + MER5A DNA MER1_type 57 175 -14 9745 182 35 60 chr4 161155301 161158045 -23130617 - L1 LINE L1 -2939 4626 902 2280 64 3 14 chr4 161158045 161158340 -23130322 + AluSp SINE Alu 1 292 -21 9745 182 35 60 chr4 161158340 161159190 -23129472 - L1 LINE L1 -6663 902 32 572 248 116 34 chr4 161159190 161159577 -23129085 + Charlie7 DNA MER1_type 2163 2581 -31 23 54 0 0 chr4 161159577 161159614 -23129048 + AT_rich Low_complexity Low_complexity 1 37 0 712 217 16 58 chr4 161159806 161159921 -23128741 + MLT1A1 LTR MaLR 185 290 -75 678 226 0 0 chr4 161159921 161160045 -23128617 - FLAM_A SINE Alu -9 124 1 712 217 16 58 chr4 161160045 161160118 -23128544 + MLT1A1 LTR MaLR 290 365 0 1618 148 8 12 chr4 161160437 161160681 -23127981 + AluJb SINE Alu 1 243 -69 1956 169 112 3 chr4 161160744 161161128 -23127534 + MSTB LTR MaLR 1 426 0 1038 188 97 18 chr4 161161186 161161518 -23127144 - MSTD LTR MaLR -8 388 1 2276 101 3 0 chr4 161162929 161163226 -23125436 + AluSx SINE Alu 1 298 -14 2258 113 0 0 chr4 161165340 161165649 -23123013 - AluSx SINE Alu -3 309 1 348 24 0 0 chr4 161166398 161166439 -23122223 + (TG)n Simple_repeat Simple_repeat 2 42 0 216 319 72 0 chr4 161166719 161166788 -23121874 - L2 LINE L2 0 3272 3199 193 378 16 54 chr4 161166993 161167188 -23121474 - L2 LINE L2 -335 2937 2753 377 345 46 23 chr4 161167333 161167507 -23121155 - MIR SINE MIR -74 188 11 207 69 0 0 chr4 161167708 161167737 -23120925 + (CA)n Simple_repeat Simple_repeat 1 29 0 22 56 0 0 chr4 161168492 161168528 -23120134 + AT_rich Low_complexity Low_complexity 1 36 0 2471 40 40 0 chr4 161168623 161168919 -23119743 + AluY SINE Alu 1 308 -3 1072 298 48 15 chr4 161169094 161169614 -23119048 + L1M4 LINE L1 3339 3875 -2271 277 315 102 15 chr4 161169651 161169848 -23118814 + MLT2E LTR ERVL 31 244 -384 688 307 89 4 chr4 161169877 161170147 -23118515 + MLT2E LTR ERVL 336 628 0 274 261 36 0 chr4 161170597 161170708 -23117954 + L1ME3A LINE L1 5840 5954 -216 274 261 61 50 chr4 161170788 161170968 -23117694 + L1ME3A LINE L1 5988 6169 -1 348 311 67 15 chr4 161170970 161171105 -23117557 + L2 LINE L2 2738 2879 -435 * 771 262 65 43 chr4 161171088 161171367 -23117295 + L2 LINE L2 1136 1420 -1894 540 325 167 5 chr4 161171377 161171755 -23116907 + LTR16A LTR ERVL 7 445 -5 1153 274 174 44 chr4 161171773 161172664 -23115998 + L2 LINE L2 1437 2443 -871 23 0 0 0 chr4 161173237 161173260 -23115402 + AT_rich Low_complexity Low_complexity 1 23 0 1980 140 30 0 chr4 161173563 161173892 -23114770 - MER44D DNA MER2_type 0 609 1 252 254 0 0 chr4 161175289 161175344 -23113318 + L2 LINE L2 3218 3272 0 696 172 73 82 chr4 161176156 161176389 -23112273 + MER106A DNA MER1_type 5 235 -1 2238 111 0 0 chr4 161176831 161177128 -23111534 + AluSx SINE Alu 2 298 -14 28 0 0 0 chr4 161177417 161177445 -23111217 + AT_rich Low_complexity Low_complexity 1 28 0 607 245 55 20 chr4 161177610 161177810 -23110852 + MER3 DNA MER1_type 2 208 -1 666 239 55 71 chr4 161178719 161178974 -23109688 - MIR SINE MIR -10 252 2 2390 115 57 25 chr4 161179794 161180230 -23108432 + LTR7 LTR ERV1 1 450 0 677 59 0 12 chr4 161180241 161180326 -23108336 + LTR7 LTR ERV1 367 450 0 411 117 0 0 chr4 161180326 161180386 -23108276 + HERVH LTR ERV1 1 60 -7653 * 3746 122 1 39 chr4 161180369 161181018 -23107644 + HERVH LTR ERV1 2371 2995 -4718 3690 124 13 13 chr4 161180997 161181594 -23107068 + HERVH LTR ERV1 3140 3736 -3977 * 1206 132 9 60 chr4 161181584 161181872 -23106790 + HERVH LTR ERV1 3956 4235 -2850 * 336 267 93 13 chr4 161232296 161232446 -23056216 + Charlie8 DNA MER1_type 56 217 -2200 327 49 0 0 chr4 161233842 161233883 -23054779 + (TA)n Simple_repeat Simple_repeat 1 41 0 189 0 0 0 chr4 161233882 161233903 -23054759 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 1656 99 160 153 chr4 161234832 161235539 -23053123 - LTR12 LTR ERV1 -132 2021 1 245 186 0 0 chr4 161235579 161235622 -23053040 - LTR30 LTR ERV1 -679 43 1 576 130 43 7 chr4 161236601 161236739 -23051923 + CT-rich Low_complexity Low_complexity 2 144 0 1820 189 3 15 chr4 161236812 161237150 -23051512 + MLT1A1 LTR MaLR 25 358 -7 611 245 0 20 chr4 161237259 161237363 -23051299 - Tigger3(Golem) DNA MER2_type -2 3027 2925 1717 174 56 12 chr4 161237363 161237685 -23050977 + MER1B DNA MER1_type 1 336 -1 611 245 0 20 chr4 161237685 161237731 -23050931 - Tigger3(Golem) DNA MER2_type -104 2925 2880 1430 178 8 19 chr4 161237738 161237997 -23050665 + MSTA LTR MaLR 173 428 0 283 288 0 0 chr4 161237997 161238056 -23050606 - Tigger3(Golem) DNA MER2_type -2970 59 1 23 0 0 0 chr4 161238228 161238251 -23050411 + AT_rich Low_complexity Low_complexity 1 23 0 292 222 22 44 chr4 161238500 161238590 -23050072 - LTR24-int LTR ERV1 -4378 745 658 325 332 153 30 chr4 161238608 161238876 -23049786 - LTR24-int LTR ERV1 -6079 679 379 1262 187 64 49 chr4 161238897 161239360 -23049302 - LTR24-int LTR ERV1 -4471 652 34 2676 142 28 26 chr4 161239392 161239858 -23048804 - LTR24 LTR ERV1 0 467 1 240 252 251 4 chr4 161240643 161240740 -23047922 + MER34 LTR ERV1 6 114 -428 1249 237 29 59 chr4 161240782 161241163 -23047499 + MER39 LTR ERV1 309 679 -28 2353 136 81 0 chr4 161241163 161241559 -23047103 - MSTA LTR MaLR 0 428 1 1249 237 29 59 chr4 161241559 161241586 -23047076 + MER39 LTR ERV1 679 705 -2 278 331 98 15 chr4 161241632 161241765 -23046897 - L2 LINE L2 0 3272 3129 23 33 0 0 chr4 161241955 161241985 -23046677 + AT_rich Low_complexity Low_complexity 1 30 0 2297 79 0 0 chr4 161242878 161243158 -23045504 - AluY SINE Alu -27 284 5 295 376 96 19 chr4 161243607 161244022 -23044640 + L2 LINE L2 1536 1982 -1332 22 35 0 0 chr4 161244079 161244108 -23044554 + AT_rich Low_complexity Low_complexity 1 29 0 223 28 56 0 chr4 161244204 161244240 -23044422 + (TAGA)n Simple_repeat Simple_repeat 3 40 0 879 222 61 56 chr4 161244240 161244435 -23044227 - MLT2F LTR ERVL -58 605 412 2237 99 0 13 chr4 161244435 161244738 -23043924 - AluSx SINE Alu -13 299 1 879 222 61 56 chr4 161244738 161244969 -23043693 - MLT2F LTR ERVL -251 412 72 2266 93 0 7 chr4 161245181 161245481 -23043181 - AluSp SINE Alu -5 308 11 21 36 0 0 chr4 161246252 161246280 -23042382 + AT_rich Low_complexity Low_complexity 1 28 0 4635 181 47 7 chr4 161246280 161247291 -23041371 - L1 LINE L1 -1240 4906 3856 1392 154 9 13 chr4 161247292 161247525 -23041137 + Tigger1 DNA MER2_type 3 234 -2184 4838 179 7 5 chr4 161247526 161248382 -23040280 + Tigger1 DNA MER2_type 1561 2418 0 551 175 90 42 chr4 161248382 161248571 -23040091 - L1 LINE L1 -2288 3858 3661 * 1892 184 0 6 chr4 161248569 161248927 -23039735 + L1MA8 LINE L1 4920 5275 -871 1196 190 74 11 chr4 161248925 161249209 -23039453 + L1MA8 LINE L1 5990 6291 0 * 22 35 0 0 chr4 161249413 161249442 -23039220 + AT_rich Low_complexity Low_complexity 1 29 0 2047 115 0 75 chr4 161249603 161249934 -23038728 + AluSg SINE Alu 1 306 -4 232 271 229 8 chr4 161251365 161251483 -23037179 + MLT1H LTR MaLR 398 541 -8 362 318 87 6 chr4 161251490 161251663 -23036999 + L2 LINE L2 3126 3312 -1 341 279 120 38 chr4 161251749 161251907 -23036755 + MIR SINE MIR 61 231 -31 1724 151 14 7 chr4 161252060 161252362 -23036300 + AluSx SINE Alu 3 306 0 6465 67 6 5 chr4 161253043 161253883 -23034779 - L1PA7 LINE L1 -1 6153 5313 * 21723 105 24 1 chr4 161253881 161257141 -23031521 + L1PA7 LINE L1 1962 5295 -851 1697 132 46 58 chr4 161257362 161257688 -23030974 - MER44D DNA MER2_type -17 592 1 22 0 0 0 chr4 161257935 161257957 -23030705 + AT_rich Low_complexity Low_complexity 1 22 0 1408 247 18 9 chr4 161258078 161258479 -23030183 - LTR40b LTR ERVL -4 458 1 194 324 147 29 chr4 161258649 161258785 -23029877 - L2 LINE L2 -1 3312 3161 23 33 0 0 chr4 161258816 161258846 -23029816 + AT_rich Low_complexity Low_complexity 1 30 0 275 222 0 0 chr4 161258899 161258953 -23029709 + MLT1G LTR MaLR 220 273 -317 1298 329 41 30 chr4 161259124 161259830 -23028832 + HERVL LTR ERVL 2437 3150 -2504 640 290 104 53 chr4 161259885 161260358 -23028304 + LTR33 LTR ERVL 18 514 -7 287 309 21 0 chr4 161260936 161261030 -23027632 - L2 LINE L2 -2 3311 3216 280 305 150 20 chr4 161261808 161262008 -23026654 + HAL1 LINE L1 1692 1917 -590 344 22 22 0 chr4 161262047 161262092 -23026570 + (TTCC)n Simple_repeat Simple_repeat 2 47 0 1496 203 44 30 chr4 161262096 161262391 -23026271 - AluJo SINE Alu -13 299 1 22 35 0 0 chr4 161262551 161262580 -23026082 + AT_rich Low_complexity Low_complexity 1 29 0 2305 215 21 70 chr4 161263111 161263780 -23024882 + MER92B LTR ERV1 1 636 0 222 197 14 42 chr4 161263823 161263894 -23024768 + CT-rich Low_complexity Low_complexity 2 70 0 427 310 76 46 chr4 161264012 161264209 -23024453 - MIR SINE MIR -13 249 47 3033 164 19 49 chr4 161267489 161268158 -23020504 - L1MA7 LINE L1 -10 6281 5633 2460 63 0 3 chr4 161268167 161268467 -23020195 - AluY SINE Alu -12 299 1 22 0 0 0 chr4 161268473 161268495 -23020167 + AT_rich Low_complexity Low_complexity 1 22 0 384 247 126 49 chr4 161269195 161269442 -23019220 - L1ME3A LINE L1 -214 5956 5691 187 152 87 22 chr4 161271383 161271429 -23017233 + L3b LINE CR1 1532 1580 -3 479 335 39 15 chr4 161272376 161272579 -23016083 + MIR SINE MIR 43 250 -12 819 295 29 8 chr4 161274197 161274441 -23014221 - MIR SINE MIR -1 261 13 415 315 62 65 chr4 161274666 161274958 -23013704 + L2 LINE L2 2413 2703 -611 252 398 58 11 chr4 161275584 161275775 -23012887 - MIR3 SINE MIR -1 207 8 702 329 64 40 chr4 161276235 161276734 -23011928 + LTR33 LTR ERVL 11 521 0 2130 239 25 9 chr4 161276971 161277524 -23011138 + MER68 LTR ERV1 1 562 0 2415 52 0 55 chr4 161277570 161277897 -23010765 - AluY SINE Alu -2 309 1 237 163 0 0 chr4 161279222 161279271 -23009391 + (CATA)n Simple_repeat Simple_repeat 4 52 0 210 371 50 70 chr4 161279833 161280135 -23008527 - L2 LINE L2 -9 3263 2968 689 264 112 4 chr4 161280529 161280771 -23007891 + HERV16 LTR ERVL 577 844 -4152 1175 314 40 47 chr4 161280813 161281406 -23007256 + HERV16 LTR ERVL 959 1547 -3449 252 0 0 0 chr4 161284266 161284294 -23004368 + (T)n Simple_repeat Simple_repeat 1 28 0 907 209 18 0 chr4 161284770 161284933 -23003729 - AluJo SINE Alu -15 297 132 197 98 24 0 chr4 161284936 161284977 -23003685 + (TA)n Simple_repeat Simple_repeat 2 43 0 637 244 0 0 chr4 161284995 161285122 -23003540 - AluJo SINE Alu -183 129 3 194 355 9 27 chr4 161285549 161285659 -23003003 - MER5A DNA MER1_type -24 165 58 23 33 0 0 chr4 161286052 161286082 -23002580 + AT_rich Low_complexity Low_complexity 1 30 0 513 302 11 109 chr4 161286719 161286984 -23001678 + MIR SINE MIR 24 262 0 519 163 0 136 chr4 161287453 161287600 -23001062 + LTR40a LTR ERVL 1 127 -392 1667 97 4 4 chr4 161289247 161289495 -22999167 - L1PA13 LINE L1 -3 6160 5913 3001 150 28 9 chr4 161289734 161289950 -22998712 + MER34B LTR ERV1 24 234 -331 2016 182 14 84 chr4 161289950 161290258 -22998404 + MSTB2 LTR MaLR 2 330 -127 195 69 0 0 chr4 161290258 161290287 -22998375 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2016 182 14 84 chr4 161290287 161290300 -22998362 + MSTB2 LTR MaLR 330 342 -115 1512 156 0 0 chr4 161290300 161290525 -22998137 - AluSq SINE Alu -88 225 1 2016 182 14 84 chr4 161290525 161290692 -22997970 + MSTB2 LTR MaLR 342 457 0 3001 150 28 9 chr4 161290692 161291007 -22997655 + MER34B LTR ERV1 234 565 0 1710 248 74 23 chr4 161291012 161291759 -22996903 - L1M4 LINE L1 -2465 3681 2897 235 388 0 0 chr4 161292979 161293064 -22995598 + L2 LINE L2 3229 3313 0 1931 123 7 11 chr4 161293228 161293505 -22995157 - AluSx SINE Alu -6 306 31 3759 145 19 17 chr4 161293961 161294604 -22994058 - LTR48B LTR ERV1 0 644 1 306 129 24 94 chr4 161294959 161295044 -22993618 - MADE1 DNA Mariner 0 80 2 2457 64 3 0 chr4 161296612 161296910 -22991752 - AluY SINE Alu -12 299 1 221 287 23 62 chr4 161296991 161297120 -22991542 + MIR SINE MIR 90 213 -49 2418 88 0 0 chr4 161297765 161298072 -22990590 - AluSx SINE Alu -3 309 3 186 179 313 0 chr4 161298341 161298408 -22990254 + L2 LINE L2 3143 3230 -83 370 164 55 0 chr4 161298494 161298567 -22990095 - MLT1F LTR MaLR 0 542 466 669 318 81 49 chr4 161298757 161298998 -22989664 + ERVL LTR ERVL 4145 4377 -1387 770 243 6 11 chr4 161298998 161299175 -22989487 + MER45A DNA AcHobo 3 178 0 669 318 81 49 chr4 161299175 161299405 -22989257 + ERVL LTR ERVL 4377 4631 -1133 24 0 0 0 chr4 161299536 161299560 -22989102 + AT_rich Low_complexity Low_complexity 1 24 0 268 350 0 64 chr4 161300631 161300834 -22987828 + MIR SINE MIR 17 206 -56 7776 17 1 1 chr4 161301603 161303136 -22985526 + L1PA3 LINE L1 4623 6155 0 24 0 0 0 chr4 161303532 161303556 -22985106 + AT_rich Low_complexity Low_complexity 1 24 0 412 130 109 0 chr4 161303563 161303655 -22985007 + L1PA7 LINE L1 6050 6151 -3 21 36 0 0 chr4 161303695 161303723 -22984939 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 161304297 161304318 -22984344 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr4 161304416 161304438 -22984224 + (TG)n Simple_repeat Simple_repeat 1 22 0 314 290 5 75 chr4 161305189 161305375 -22983287 + L1M4 LINE L1 3479 3651 -2495 462 220 79 45 chr4 161305430 161305607 -22983055 + L1ME3A LINE L1 5712 5894 -276 * 3948 87 28 3 chr4 161305606 161306181 -22982481 - L1PB1 LINE L1 -284 5867 5279 * 11100 179 48 10 chr4 161306176 161306543 -22982119 - L1PBa LINE L1 -1409 5453 5101 207 0 0 0 chr4 161306543 161306566 -22982096 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 11100 179 48 10 chr4 161306566 161311304 -22977358 - L1PBa LINE L1 -1761 5101 3 284 274 26 0 chr4 161311338 161311455 -22977207 - L1MEc LINE L1 -3468 2747 2628 * 516 323 30 8 chr4 161311453 161311688 -22976974 - L1MEc LINE L1 -6107 289 50 1020 199 38 0 chr4 161312039 161312250 -22976412 - L1MC2 LINE L1 -8 6336 6118 21 36 0 0 chr4 161313664 161313692 -22974970 + AT_rich Low_complexity Low_complexity 1 28 0 900 179 43 27 chr4 161314080 161314264 -22974398 + MER20 DNA MER1_type 33 219 0 243 292 22 11 chr4 161315651 161315740 -22972922 + MIR SINE MIR 173 262 0 21 0 0 0 chr4 161316695 161316716 -22971946 + AT_rich Low_complexity Low_complexity 1 21 0 459 0 0 0 chr4 161316788 161316839 -22971823 + (CA)n Simple_repeat Simple_repeat 2 52 0 1123 253 146 23 chr4 161317147 161317531 -22971131 + MLT1D LTR MaLR 75 505 0 252 328 9 78 chr4 161318112 161318228 -22970434 - L2 LINE L2 -16 3297 3190 648 255 21 7 chr4 161318261 161318406 -22970256 + FRAM SINE Alu 1 146 -30 235 154 0 19 chr4 161318985 161319037 -22969625 - L1MC4 LINE L1 -1339 6703 6653 207 88 29 0 chr4 161319387 161319421 -22969241 + (GA)n Simple_repeat Simple_repeat 2 36 0 223 351 30 22 chr4 161319750 161319884 -22968778 + L2 LINE L2 2715 2849 -465 2139 119 0 3 chr4 161320491 161320798 -22967864 + AluSq SINE Alu 3 308 0 1345 157 48 31 chr4 161320831 161321125 -22967537 + L1MA9 LINE L1 6012 6310 -2 27 29 0 0 chr4 161321278 161321312 -22967350 + AT_rich Low_complexity Low_complexity 1 34 0 346 213 52 109 chr4 161323863 161324067 -22964595 + MIR SINE MIR 39 228 -34 3910 46 25 2 chr4 161324085 161324564 -22964098 + LTR2B LTR ERV1 1 490 0 357 353 20 0 chr4 161324681 161324783 -22963879 - MIR SINE MIR -69 139 36 331 240 41 25 chr4 161324845 161324966 -22963696 + MER53 DNA DNA 2 124 -65 270 200 59 24 chr4 161325026 161325111 -22963551 - MER53 DNA DNA -85 104 17 * 282 184 66 40 chr4 161325039 161325115 -22963547 + MER53 DNA DNA 109 186 -3 1590 298 108 19 chr4 161326640 161327317 -22961345 + L1M2b LINE L1 1 737 -6472 851 312 148 14 chr4 161327566 161328060 -22960602 + L2 LINE L2 2767 3308 -5 363 296 173 0 chr4 161328109 161328288 -22960374 - MIR SINE MIR -52 210 1 299 258 8 16 chr4 161328787 161328911 -22959751 + MER113 DNA MER1_type? 1 123 -398 26 82 0 0 chr4 161329297 161329358 -22959304 + AT_rich Low_complexity Low_complexity 1 61 0 29 0 0 0 chr4 161330423 161330452 -22958210 + AT_rich Low_complexity Low_complexity 1 29 0 332 109 0 0 chr4 161330553 161330599 -22958063 + MER66B LTR ERV1 299 344 -142 2121 99 7 7 chr4 161331222 161331525 -22957137 - AluSp SINE Alu -10 303 1 226 132 38 0 chr4 161332921 161332974 -22955688 + (TA)n Simple_repeat Simple_repeat 2 56 0 2366 155 53 42 chr4 161333128 161333600 -22955062 - MER31A LTR ERV1 -8 477 1 356 298 11 0 chr4 161335322 161335416 -22953246 + MIR SINE MIR 58 152 -110 581 267 74 0 chr4 161335439 161335615 -22953047 - LTR33 LTR ERVL 0 521 333 480 264 52 46 chr4 161335716 161335890 -22952772 - LTR33 LTR ERVL -346 175 1 1701 222 58 31 chr4 161336508 161336958 -22951704 - LTR40b LTR ERVL 0 462 1 1776 190 0 0 chr4 161339218 161339518 -22949144 - AluSx SINE Alu -12 300 1 22 106 0 0 chr4 161339525 161339610 -22949052 + AT_rich Low_complexity Low_complexity 1 85 0 24 32 0 0 chr4 161339830 161339861 -22948801 + AT_rich Low_complexity Low_complexity 1 31 0 1724 166 118 18 chr4 161340401 161340732 -22947930 - THE1B LTR MaLR 0 364 1 280 346 162 13 chr4 161341648 161341876 -22946786 - MIR SINE MIR 0 262 1 678 283 71 81 chr4 161342705 161343114 -22945548 + L2 LINE L2 2605 3010 -303 666 340 61 17 chr4 161343135 161343286 -22945376 + L2 LINE L2 2817 2960 -353 2110 135 0 0 chr4 161343286 161343583 -22945079 - AluSx SINE Alu -15 297 1 1596 182 17 17 chr4 161343585 161343876 -22944786 - AluJb SINE Alu -17 295 5 666 340 61 17 chr4 161343876 161344197 -22944465 + L2 LINE L2 2960 3313 0 22 0 0 0 chr4 161344197 161344219 -22944443 + AT_rich Low_complexity Low_complexity 1 22 0 180 77 0 0 chr4 161345807 161345833 -22942829 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1977 111 47 4 chr4 161345958 161346237 -22942425 - AluSx SINE Alu -21 291 1 301 353 25 8 chr4 161346240 161346359 -22942303 - L2 LINE L2 -602 2712 2592 822 246 79 8 chr4 161346509 161346749 -22941913 - MIR SINE MIR -1 261 5 24 67 0 0 chr4 161347636 161347681 -22940981 + AT_rich Low_complexity Low_complexity 1 45 0 526 305 19 38 chr4 161347727 161347937 -22940725 - MIR SINE MIR -56 206 1 341 309 74 6 chr4 161348026 161348188 -22940474 - MIR SINE MIR -36 226 54 2074 141 3 0 chr4 161348385 161348682 -22939980 - AluSx SINE Alu -14 298 1 28 71 0 0 chr4 161348848 161348904 -22939758 + AT_rich Low_complexity Low_complexity 1 56 0 255 179 0 0 chr4 161349084 161349151 -22939511 + A-rich Low_complexity Low_complexity 1 67 0 2234 82 6 35 chr4 161349184 161349499 -22939163 + AluSc SINE Alu 3 308 -1 1807 156 7 10 chr4 161349563 161349858 -22938804 + AluSx SINE Alu 1 294 -18 23 33 0 0 chr4 161351086 161351116 -22937546 + AT_rich Low_complexity Low_complexity 1 30 0 1892 145 25 0 chr4 161352305 161352587 -22936075 + AluSx SINE Alu 1 289 -23 45 45 0 0 chr4 161352770 161352836 -22935826 + AT_rich Low_complexity Low_complexity 1 66 0 3597 120 53 28 chr4 161353136 161354105 -22934557 - MER11A LTR ERVK 0 1071 1 31 44 0 0 chr4 161354506 161354551 -22934111 + AT_rich Low_complexity Low_complexity 1 45 0 440 348 103 40 chr4 161354771 161355401 -22933261 + L2 LINE L2 2146 2815 -499 1511 207 7 23 chr4 161355640 161355945 -22932717 + AluJo SINE Alu 3 302 -10 766 226 10 41 chr4 161356272 161356467 -22932195 + AluJo SINE Alu 27 215 -97 1362 209 41 43 chr4 161356646 161357015 -22931647 - MLT1A2 LTR MaLR -4 370 3 1948 96 3 80 chr4 161357023 161357336 -22931326 + AluSc SINE Alu 1 289 -20 666 216 26 20 chr4 161357961 161358114 -22930548 + LTR45 LTR ERV1 372 525 0 255 72 15 103 chr4 161358365 161358560 -22930102 + (TA)n Simple_repeat Simple_repeat 2 179 0 58 28 0 0 chr4 161359096 161359168 -22929494 + AT_rich Low_complexity Low_complexity 1 72 0 601 265 55 45 chr4 161359640 161359949 -22928713 + L1MC4 LINE L1 7541 7852 -190 414 69 0 0 chr4 161360265 161360323 -22928339 + (CAT)n Simple_repeat Simple_repeat 2 59 0 2228 113 3 0 chr4 161362383 161362693 -22925969 + AluSx SINE Alu 1 311 -1 194 220 17 0 chr4 161363516 161363575 -22925087 + CT-rich Low_complexity Low_complexity 5 64 0 301 259 86 43 chr4 161364225 161364341 -22924321 + MIR SINE MIR 112 232 -30 2893 82 43 36 chr4 161364379 161364820 -22923842 - MLT2A1 LTR ERVL 0 444 1 25201 74 14 4 chr4 161364820 161368091 -22920571 - HERVL-A1 LTR ERVL 0 5654 2353 32 67 0 0 chr4 161368976 161369036 -22919626 + AT_rich Low_complexity Low_complexity 1 60 0 5268 139 24 23 chr4 161369376 161370326 -22918336 - L1MA7 LINE L1 0 6291 5341 2235 99 0 3 chr4 161370693 161370987 -22917675 - AluSq SINE Alu -20 293 1 207 309 136 0 chr4 161371666 161371747 -22916915 + L2 LINE L2 3163 3254 -18 400 286 71 26 chr4 161372385 161372539 -22916123 - L2 LINE L2 0 3313 3153 198 0 0 0 chr4 161373568 161373590 -22915072 + (CA)n Simple_repeat Simple_repeat 1 22 0 209 93 70 0 chr4 161373590 161373633 -22915029 + (TA)n Simple_repeat Simple_repeat 1 46 0 330 322 70 37 chr4 161373807 161374049 -22914613 + HAL1 LINE L1 1423 1672 -835 23 0 0 0 chr4 161374151 161374174 -22914488 + AT_rich Low_complexity Low_complexity 1 23 0 31 88 0 0 chr4 161374252 161374332 -22914330 + AT_rich Low_complexity Low_complexity 1 80 0 2223 82 0 7 chr4 161375063 161375379 -22913283 + AluY SINE Alu 1 311 0 1314 183 97 59 chr4 161375961 161376250 -22912412 + AluJo SINE Alu 1 300 -2 2238 89 4 0 chr4 161376935 161377268 -22911394 - AluSg SINE Alu 0 334 1 583 304 54 0 chr4 161377610 161377778 -22910884 + MIR SINE MIR 13 189 -73 2238 110 0 10 chr4 161378449 161378759 -22909903 - AluSg SINE Alu -3 307 1 310 310 61 80 chr4 161378760 161378973 -22909689 - MLT1J LTR MaLR -74 437 229 330 301 26 88 chr4 161379387 161379580 -22909082 + HAL1 LINE L1 2270 2450 -57 619 38 13 0 chr4 161379787 161379866 -22908796 + MADE1 DNA Mariner 1 80 0 207 195 0 0 chr4 161380814 161380855 -22907807 + T-rich Low_complexity Low_complexity 5 45 0 5735 132 185 88 chr4 161381554 161383102 -22905560 - pTR5 LTR ERV1 0 2438 741 2013 135 7 0 chr4 161384406 161384709 -22903953 - AluSx SINE Alu -7 305 1 216 184 0 0 chr4 161386045 161386083 -22902579 + (CATATA)n Simple_repeat Simple_repeat 2 39 0 2285 101 0 15 chr4 161386086 161386413 -22902249 - MLT2A1 LTR ERVL 0 444 123 821 297 64 76 chr4 161387463 161387935 -22900727 + MLT1J LTR MaLR 5 470 -41 194 330 93 0 chr4 161388521 161388618 -22900044 + MIR SINE MIR 101 206 -56 304 325 39 0 chr4 161388909 161389063 -22899599 + L1MEd LINE L1 601 760 -5359 1303 282 110 52 chr4 161389130 161389896 -22898766 + L1MCc LINE L1 666 1475 -4948 2326 94 0 0 chr4 161389992 161390300 -22898362 + AluY SINE Alu 1 308 -3 1003 255 55 79 chr4 161390578 161391212 -22897450 + L1MC5 LINE L1 6634 7255 -736 363 226 158 80 chr4 161391348 161391684 -22896978 + L1MC5 LINE L1 7302 7663 -298 205 165 50 74 chr4 161391751 161391872 -22896790 + (TATAA)n Simple_repeat Simple_repeat 2 119 0 264 241 99 21 chr4 161392112 161392253 -22896409 + L1MC5 LINE L1 7784 7935 -26 23 33 0 0 chr4 161392285 161392315 -22896347 + AT_rich Low_complexity Low_complexity 1 30 0 201 200 33 44 chr4 161392453 161392543 -22896119 + A-rich Low_complexity Low_complexity 3 91 0 258 326 93 17 chr4 161392584 161392875 -22895787 + L1M4 LINE L1 3964 4276 -1870 323 265 0 0 chr4 161393082 161393150 -22895512 + MER5B DNA MER1_type 10 77 -101 326 200 0 0 chr4 161393152 161393207 -22895455 + Alu SINE Alu 2 56 -245 827 111 0 8 chr4 161393207 161393333 -22895329 + AluSg/x SINE Alu 161 285 -25 1335 224 81 3 chr4 161393333 161393641 -22895021 + MLT1A1 LTR MaLR 34 365 0 3207 146 74 22 chr4 161394715 161395205 -22893457 + LTR9 LTR ERV1 1 464 -148 1757 107 3 74 chr4 161395205 161395504 -22893158 + AluSc SINE Alu 4 281 -28 303 28 0 0 chr4 161395504 161395540 -22893122 + (CA)n Simple_repeat Simple_repeat 2 37 0 3207 146 74 22 chr4 161395540 161395630 -22893032 + LTR9 LTR ERV1 463 612 0 1885 128 13 42 chr4 161396240 161396376 -22892286 + AluSx SINE Alu 1 139 -173 2791 7 0 0 chr4 161396376 161396683 -22891979 + AluYa5 SINE Alu 1 307 -4 1885 128 13 42 chr4 161396683 161396859 -22891803 + AluSx SINE Alu 139 304 -8 420 294 79 31 chr4 161399564 161400409 -22888253 - L1ME3 LINE L1 -7 6155 5263 1127 263 68 46 chr4 161400411 161401146 -22887516 - L1ME3 LINE L1 -1559 4587 3837 * 3229 196 72 44 chr4 161401139 161402219 -22886443 - L1MB8 LINE L1 -1 6675 5558 6069 247 78 10 chr4 161402263 161404400 -22884262 - L1MB8 LINE L1 -1702 4942 2660 24 91 0 0 chr4 161404527 161404593 -22884069 + AT_rich Low_complexity Low_complexity 1 66 0 680 329 85 41 chr4 161404612 161405023 -22883639 - L2 LINE L2 -49 3264 2836 243 61 0 0 chr4 161405284 161405317 -22883345 + (TA)n Simple_repeat Simple_repeat 1 33 0 3652 199 21 50 chr4 161405977 161406500 -22882162 - L1PA11 LINE L1 -48 6126 5654 3872 102 38 20 chr4 161406500 161407099 -22881563 - MER4B LTR ERV1 0 610 1 3652 199 21 50 chr4 161407099 161407513 -22881149 - L1PA11 LINE L1 -520 5654 5230 31 0 0 0 chr4 161407543 161407574 -22881088 + AT_rich Low_complexity Low_complexity 1 31 0 1965 98 31 8 chr4 161407711 161408062 -22880600 - LTR7 LTR ERV1 -2 448 1 2280 108 50 16 chr4 161408062 161408441 -22880221 - HERVH LTR ERV1 0 7713 7322 1364 129 18 5 chr4 161408439 161408656 -22880006 - HERVH LTR ERV1 -1894 5819 5600 * 4310 143 0 1 chr4 161408657 161409320 -22879342 - HERVH LTR ERV1 -2564 5149 4488 3326 111 4 6 chr4 161409322 161409825 -22878837 - HERVH LTR ERV1 -3720 3993 3492 805 176 20 0 chr4 161409815 161409963 -22878699 - HERVH LTR ERV1 -4423 3290 3140 * 19330 100 35 11 chr4 161409957 161412873 -22875789 - HERVH LTR ERV1 -4726 2987 1 2490 94 119 5 chr4 161412875 161413277 -22875385 - LTR7 LTR ERV1 -2 448 1 24 0 0 0 chr4 161413415 161413439 -22875223 + AT_rich Low_complexity Low_complexity 1 24 0 2289 77 30 0 chr4 161414782 161415081 -22873581 - AluSc SINE Alu -1 308 1 393 251 97 17 chr4 161415226 161415401 -22873261 - L1MB8 LINE L1 -4240 2406 2218 1353 257 99 17 chr4 161415430 161415834 -22872828 - L1MB8 LINE L1 -6104 438 2 603 302 65 16 chr4 161415834 161416079 -22872583 - MLT1J LTR MaLR -231 280 24 221 244 0 0 chr4 161416475 161416520 -22872142 + GA-rich Low_complexity Low_complexity 4 48 0 292 244 0 23 chr4 161417342 161417428 -22871234 + CT-rich Low_complexity Low_complexity 3 86 0 183 80 0 0 chr4 161417595 161417620 -22871042 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5674 176 28 16 chr4 161417719 161419359 -22869303 - L1MA9 LINE L1 0 6312 4652 224 217 0 0 chr4 161419394 161419440 -22869222 + T-rich Low_complexity Low_complexity 4 49 0 269 206 19 75 chr4 161420488 161420595 -22868067 - HAL1 LINE L1 -1046 1461 1361 258 330 26 70 chr4 161420762 161420989 -22867673 + MIR SINE MIR 32 248 -14 6116 253 84 36 chr4 161421275 161422898 -22865764 + L1MA5 LINE L1 12 1556 -5292 1867 149 29 32 chr4 161422898 161423274 -22865388 - THE1C LTR MaLR 0 375 1 6116 253 84 36 chr4 161423274 161425573 -22863089 + L1MA5 LINE L1 1556 4124 -2724 2882 114 0 2 chr4 161425575 161425980 -22862682 + MLT2A1 LTR ERVL 1 404 -40 23 0 0 0 chr4 161425980 161426003 -22862659 + AT_rich Low_complexity Low_complexity 1 23 0 498 100 76 0 chr4 161426003 161426336 -22862326 + (TA)n Simple_repeat Simple_repeat 1 358 0 542 61 98 0 chr4 161426350 161426514 -22862148 + (TA)n Simple_repeat Simple_repeat 1 180 0 240 62 167 0 chr4 161426519 161426567 -22862095 + MLT2A1 LTR ERVL 389 444 0 3985 199 22 3 chr4 161426567 161427429 -22861233 + L1MA5 LINE L1 4122 4999 -1849 2310 205 63 4 chr4 161427437 161427958 -22860704 + L1MA5 LINE L1 6450 7001 -1 344 176 27 0 chr4 161428304 161428378 -22860284 - MSTD LTR MaLR -2 394 319 * 6779 124 8 14 chr4 161428372 161428662 -22860000 + L1MA1 LINE L1 4954 5244 -1058 1659 199 44 19 chr4 161428662 161429028 -22859634 + THE1C LTR MaLR 1 375 0 6779 124 8 14 chr4 161429028 161430040 -22858622 + L1MA1 LINE L1 5244 6251 -51 267 31 0 0 chr4 161430046 161430078 -22858584 + (TG)n Simple_repeat Simple_repeat 1 32 0 1207 255 54 10 chr4 161430078 161430385 -22858277 - MSTD LTR MaLR -72 324 1 685 316 43 58 chr4 161430882 161431278 -22857384 - MER21B LTR ERV1 -154 709 320 876 85 8 39 chr4 161431320 161431449 -22857213 - AluSg/x SINE Alu -21 288 164 1007 212 17 25 chr4 161431488 161431724 -22856938 - MLT2D LTR ERVL -180 234 1 348 204 71 62 chr4 161431826 161431939 -22856723 + MLT2B1 LTR ERVL 350 463 -57 261 214 0 0 chr4 161431984 161432040 -22856622 + MLT2B1 LTR ERVL 465 520 0 204 250 47 31 chr4 161432208 161432272 -22856390 + L2 LINE L2 2694 2758 -556 3614 191 27 8 chr4 161432298 161432695 -22855967 - L1MA9 LINE L1 -21 6291 5903 234 0 0 0 chr4 161432695 161432721 -22855941 + (TA)n Simple_repeat Simple_repeat 1 26 0 3614 191 27 8 chr4 161432721 161433159 -22855503 - L1MA9 LINE L1 -409 5903 5344 722 310 98 31 chr4 161433172 161433630 -22855032 + L2 LINE L2 2806 3294 -19 911 221 34 30 chr4 161435472 161435707 -22852955 - L1MD2 LINE L1 -13 6346 6111 2253 110 0 7 chr4 161435725 161436035 -22852627 - AluSg SINE Alu -2 308 1 1987 148 0 28 chr4 161436236 161436553 -22852109 + AluSx SINE Alu 1 308 -4 336 270 35 17 chr4 161436992 161437107 -22851555 - MER5C DNA MER1_type 0 324 208 784 223 179 0 chr4 161437174 161437358 -22851304 - MER58A DNA MER1_type -3 221 5 185 226 97 16 chr4 161437364 161437426 -22851236 - MER5C DNA MER1_type -225 99 33 180 0 0 0 chr4 161437439 161437459 -22851203 + (T)n Simple_repeat Simple_repeat 1 20 0 1978 156 0 13 chr4 161437599 161437914 -22850748 - AluSx SINE Alu -1 311 1 238 260 8 8 chr4 161437962 161438085 -22850577 + C-rich Low_complexity Low_complexity 4 126 0 1753 212 23 29 chr4 161439165 161439551 -22849111 + MSTD LTR MaLR 1 384 -12 247 189 14 14 chr4 161439910 161439984 -22848678 + (TA)n Simple_repeat Simple_repeat 2 75 0 389 114 0 14 chr4 161440935 161441005 -22847657 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 1403 196 16 60 chr4 161441263 161441645 -22847017 + MLT1A1 LTR MaLR 1 365 0 350 258 159 18 chr4 161441781 161441944 -22846718 - MIR SINE MIR -10 252 67 8473 229 18 62 chr4 161442490 161445166 -22843496 - L1 LINE L1 -1465 4681 2124 2644 249 17 30 chr4 161445193 161445507 -22843155 - L1PA13 LINE L1 -4371 3213 2896 1325 196 0 109 chr4 161445507 161445838 -22842824 - AluJb SINE Alu -7 295 1 2644 249 17 30 chr4 161445838 161446431 -22842231 - L1PA13 LINE L1 -4688 2896 2294 274 304 0 0 chr4 161447155 161447234 -22841428 - L1PA13 LINE L1 -5400 2181 2103 1053 330 13 41 chr4 161447510 161447970 -22840692 - L1PA13 LINE L1 -6339 1235 789 204 111 0 0 chr4 161448442 161448478 -22840184 + (TTA)n Simple_repeat Simple_repeat 1 36 0 701 198 0 9 chr4 161448483 161448599 -22840063 - FLAM_C SINE Alu -28 115 1 606 385 38 29 chr4 161449128 161449549 -22839113 + L2 LINE L2 2846 3270 -2 1738 250 74 14 chr4 161449801 161450380 -22838282 - L1ME1 LINE L1 -5 6161 5548 1537 204 50 42 chr4 161450393 161450414 -22838248 - MLT1B LTR MaLR 0 390 371 1957 158 119 13 chr4 161450414 161450801 -22837861 - MSTA LTR MaLR 0 428 1 1537 204 50 42 chr4 161450801 161451161 -22837501 - MLT1B LTR MaLR -19 371 6 23 0 0 0 chr4 161451266 161451289 -22837373 + AT_rich Low_complexity Low_complexity 1 23 0 2288 113 32 19 chr4 161451295 161451665 -22836997 + THE1C LTR MaLR 1 375 0 9349 126 48 10 chr4 161451665 161453187 -22835475 + THE1C-int LTR MaLR 1 1580 0 1997 148 47 16 chr4 161453187 161453551 -22835111 + THE1C LTR MaLR 1 375 0 507 279 44 54 chr4 161453598 161453895 -22834767 - L1ME LINE L1 -2850 3230 2937 1292 285 91 45 chr4 161453953 161454252 -22834410 - L1ME LINE L1 -3263 2817 2533 480 159 0 87 chr4 161454252 161454378 -22834284 - L1PA11 LINE L1 -2 6172 6058 1292 285 91 45 chr4 161454378 161456466 -22832196 - L1ME LINE L1 -3547 2533 329 2079 167 34 34 chr4 161456723 161457280 -22831382 - MLT2A2 LTR ERVL 0 554 1 6158 196 39 17 chr4 161459248 161460538 -22828124 + MER57A-int LTR ERV1 5826 7143 -394 608 151 111 75 chr4 161460539 161460695 -22827967 + LTR54B LTR ERV1 1 181 -329 236 91 23 0 chr4 161460695 161460739 -22827923 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 608 151 111 75 chr4 161460739 161460850 -22827812 + LTR54B LTR ERV1 181 287 -223 281 188 0 31 chr4 161460850 161460914 -22827748 + MER57A-int LTR ERV1 7433 7494 -43 2152 181 13 5 chr4 161460925 161461318 -22827344 + MER57A LTR ERV1 1 396 -7 605 157 0 0 chr4 161461324 161461432 -22827230 + L1MA4A LINE L1 6191 6298 -5 1988 158 3 0 chr4 161461736 161462040 -22826622 + AluJb SINE Alu 1 305 -7 2136 241 14 35 chr4 161462195 161462771 -22825891 + MER74B LTR ERVL 55 618 -4 351 304 0 10 chr4 161463542 161463644 -22825018 + MER5A DNA MER1_type 9 109 -80 1030 289 94 14 chr4 161464017 161464442 -22824220 - L1MEc LINE L1 -5737 659 201 243 0 0 0 chr4 161464628 161464655 -22824007 + (TA)n Simple_repeat Simple_repeat 1 27 0 300 77 0 92 chr4 161464785 161464915 -22823747 + (TA)n Simple_repeat Simple_repeat 1 118 0 653 0 73 67 chr4 161464917 161465096 -22823566 + (CTATA)n Simple_repeat Simple_repeat 1 180 0 514 175 11 0 chr4 161465133 161465310 -22823352 + (TA)n Simple_repeat Simple_repeat 1 179 0 298 201 6 6 chr4 161465330 161465489 -22823173 + (TA)n Simple_repeat Simple_repeat 1 159 0 2100 197 111 46 chr4 161465711 161465818 -22822844 - LTR48B LTR ERV1 0 644 545 2329 75 3 9 chr4 161465818 161466136 -22822526 - L1PA10 LINE L1 0 6168 5853 2100 197 111 46 chr4 161466136 161466633 -22822029 - LTR48B LTR ERV1 -99 545 1 1051 296 43 56 chr4 161467222 161467753 -22820909 + L2 LINE L2 2785 3313 0 186 167 0 0 chr4 161467754 161467790 -22820872 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 2149 119 0 0 chr4 161468180 161468473 -22820189 - AluSp SINE Alu -20 293 1 285 259 183 41 chr4 161468972 161469169 -22819493 - LTR16B LTR ERVL -235 229 5 1839 133 32 4 chr4 161470175 161470453 -22818209 + AluSx SINE Alu 1 286 -26 25 75 0 0 chr4 161470553 161470606 -22818056 + AT_rich Low_complexity Low_complexity 1 53 0 2145 128 0 6 chr4 161470739 161471051 -22817611 + AluSx SINE Alu 1 310 -2 23 0 0 0 chr4 161472261 161472284 -22816378 + AT_rich Low_complexity Low_complexity 1 23 0 2017 152 18 221 chr4 161472865 161473414 -22815248 + L1PB4 LINE L1 4615 5274 -872 189 0 0 0 chr4 161473414 161473435 -22815227 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 1476 190 15 11 chr4 161473436 161473704 -22814958 - AluJo SINE Alu -41 271 3 2017 152 18 221 chr4 161473704 161474048 -22814614 + L1PB4 LINE L1 5273 5328 -818 562 175 136 0 chr4 161474048 161474151 -22814511 + AluJo/FLAM SINE Alu 1 117 -195 1086 93 0 0 chr4 161474153 161474303 -22814359 - AluY SINE Alu 0 311 162 27 0 0 0 chr4 161474311 161474338 -22814324 + AT_rich Low_complexity Low_complexity 1 27 0 4320 172 24 17 chr4 161474338 161474982 -22813680 + L1PB4 LINE L1 5319 5972 -184 2173 119 7 0 chr4 161474982 161475292 -22813370 + AluSp SINE Alu 1 312 -1 4320 172 24 17 chr4 161475292 161475478 -22813184 + L1PB4 LINE L1 5972 6155 -1 321 329 107 7 chr4 161476048 161476197 -22812465 - MIR SINE MIR -65 197 34 522 307 108 25 chr4 161476367 161476608 -22812054 + MIR SINE MIR 1 261 -1 25 31 0 0 chr4 161477129 161477161 -22811501 + AT_rich Low_complexity Low_complexity 1 32 0 636 307 252 52 chr4 161478509 161480548 -22808114 + L2 LINE L2 62 1692 -1622 2062 109 7 11 chr4 161480548 161480942 -22807720 - AluSp SINE Alu 0 393 1 636 307 252 52 chr4 161480942 161480979 -22807683 + L2 LINE L2 1692 1720 -1594 1654 238 66 25 chr4 161480979 161481463 -22807199 - MLT1D LTR MaLR 0 505 2 636 307 252 52 chr4 161481463 161481537 -22807125 + L2 LINE L2 1720 2680 -634 409 330 66 22 chr4 161481580 161481807 -22806855 + L1ME3A LINE L1 4514 4750 -1396 1137 220 128 122 chr4 161481812 161482752 -22805910 - LTR1B LTR ERV1 0 1020 1 375 281 49 76 chr4 161482970 161483035 -22805627 + L1ME3A LINE L1 5590 5655 -515 729 237 36 32 chr4 161483035 161483254 -22805408 + MER58A DNA MER1_type 1 220 -4 375 281 49 76 chr4 161483254 161483340 -22805322 + L1ME3A LINE L1 5655 5742 -428 2141 126 0 3 chr4 161483340 161483650 -22805012 + AluY SINE Alu 1 309 -2 375 281 49 76 chr4 161483650 161483672 -22804990 + L1ME3A LINE L1 5742 5763 -407 1998 135 44 39 chr4 161483672 161484034 -22804628 - THE1B LTR MaLR 0 364 1 375 281 49 76 chr4 161484034 161484228 -22804434 + L1ME3A LINE L1 5763 5949 -221 2167 107 7 10 chr4 161484379 161484677 -22803985 + AluSc SINE Alu 1 297 -12 215 350 34 8 chr4 161484871 161484988 -22803674 - MIR SINE MIR -14 248 129 214 300 154 18 chr4 161485077 161485187 -22803475 - MIR SINE MIR -50 212 88 255 252 50 0 chr4 161486068 161486187 -22802475 + (TA)n Simple_repeat Simple_repeat 2 126 0 23 33 0 0 chr4 161486278 161486308 -22802354 + AT_rich Low_complexity Low_complexity 1 30 0 231 369 85 14 chr4 161486442 161486583 -22802079 + L2 LINE L2 3119 3269 -3 1035 183 118 4 chr4 161486663 161486909 -22801753 - L1MA9 LINE L1 -42 6270 5997 21 0 0 0 chr4 161487055 161487076 -22801586 + AT_rich Low_complexity Low_complexity 1 21 0 19548 157 25 11 chr4 161487132 161489088 -22799574 - L1MA3 LINE L1 0 7724 5797 1507 231 0 3 chr4 161489088 161489386 -22799276 - AluJo SINE Alu -15 297 1 19548 157 25 11 chr4 161489386 161494537 -22794125 - L1MA3 LINE L1 -1927 5797 520 1846 142 0 95 chr4 161494571 161494909 -22793753 + AluJb SINE Alu 1 306 -6 24 67 0 0 chr4 161495703 161495748 -22792914 + AT_rich Low_complexity Low_complexity 1 45 0 1942 103 22 61 chr4 161496046 161496357 -22792305 + AluSc SINE Alu 1 299 -10 22 0 0 0 chr4 161496357 161496379 -22792283 + AT_rich Low_complexity Low_complexity 1 22 0 872 305 34 24 chr4 161496676 161497004 -22791658 + LTR40a LTR ERVL 1 331 -188 1085 189 170 30 chr4 161497276 161497541 -22791121 + AluJo SINE Alu 1 302 0 1593 199 50 0 chr4 161498531 161498852 -22789810 + MER1B DNA MER1_type 1 337 0 3009 227 68 40 chr4 161499439 161500636 -22788026 + L1MCb LINE L1 16 1249 -4906 3333 123 47 14 chr4 161500650 161500697 -22787965 - MER1A DNA MER1_type -2173 527 483 2325 108 3 0 chr4 161500697 161501004 -22787658 - AluSx SINE Alu -4 308 1 3333 123 47 14 chr4 161501004 161501466 -22787196 - MER1A DNA MER1_type -2217 483 1 304 345 134 46 chr4 161502856 161503184 -22785478 + L2 LINE L2 2933 3289 -24 188 132 0 26 chr4 161503780 161503811 -22784851 + (TAA)n Simple_repeat Simple_repeat 2 33 -5 7064 47 0 1 chr4 161503811 161505344 -22783318 - L1PA5 LINE L1 -2 6152 4609 188 132 0 26 chr4 161505344 161505350 -22783312 + (TAA)n Simple_repeat Simple_repeat 33 38 0 264 185 0 0 chr4 161505727 161505781 -22782881 + CT-rich Low_complexity Low_complexity 3 56 0 311 387 38 5 chr4 161506071 161506283 -22782379 - L2 LINE L2 -569 2745 2527 2475 61 0 0 chr4 161507505 161507800 -22780862 - AluY SINE Alu -16 295 1 431 293 88 21 chr4 161508113 161508352 -22780310 - L1MC/D LINE L1 -2171 5637 5383 4916 150 6 3 chr4 161508522 161509970 -22778692 - L1PA16 LINE L1 -9 6157 4698 21 0 0 0 chr4 161510181 161510202 -22778460 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr4 161511136 161511171 -22777491 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr4 161511382 161511414 -22777248 + AT_rich Low_complexity Low_complexity 1 32 0 330 252 77 77 chr4 161511496 161511730 -22776932 - L1ME4a LINE L1 -106 6015 5782 2163 215 34 28 chr4 161511742 161512352 -22776310 - L1MCb LINE L1 -4864 1181 568 1768 190 40 3 chr4 161512663 161513011 -22775651 - MER4D LTR ERV1 -8 895 535 263 128 0 0 chr4 161513011 161513050 -22775612 - MSTA LTR MaLR 0 428 390 2039 152 0 0 chr4 161513050 161513353 -22775309 + AluSx SINE Alu 1 303 -9 1873 167 86 16 chr4 161513417 161513789 -22774873 - MSTA LTR MaLR -30 398 1 8770 177 31 14 chr4 161513789 161515412 -22773250 - MSTA-int LTR MaLR 0 1651 1 2627 121 24 21 chr4 161515412 161515833 -22772829 - MSTA LTR MaLR 0 428 7 2638 181 30 13 chr4 161515843 161516368 -22772294 - MER4D LTR ERV1 -369 534 1 2760 206 56 87 chr4 161516368 161516860 -22771802 - MER4D-int LTR ERV1 0 6758 6260 183 195 49 24 chr4 161516860 161516901 -22771761 + L3 LINE CR1 522 563 -1014 2760 206 56 87 chr4 161516901 161517221 -22771441 - MER4D-int LTR ERV1 -498 6260 5932 259 204 111 46 chr4 161517229 161517337 -22771325 - MER4D-int LTR ERV1 -1420 5338 5224 398 196 0 181 chr4 161517732 161517865 -22770797 - LOR1-int LTR ERV1 -4172 3948 3840 878 255 53 40 chr4 161517988 161518310 -22770352 - L1MCb LINE L1 -5716 329 4 859 330 50 18 chr4 161518690 161519032 -22769630 - HERV16 LTR ERVL -1900 3096 2744 619 333 31 8 chr4 161519119 161519380 -22769282 - HERV16 LTR ERVL -2233 2763 2497 430 390 0 0 chr4 161519410 161519633 -22769029 + ERVL LTR ERVL 3253 3475 -2289 327 225 28 0 chr4 161519905 161519976 -22768686 + ERVL LTR ERVL 3785 3857 -1907 495 275 55 92 chr4 161520723 161521069 -22767593 - HERV16 LTR ERVL -3183 2471 2139 772 338 28 0 chr4 161521102 161521392 -22767270 - HERV16 LTR ERVL -2988 2008 1711 286 223 16 50 chr4 161521716 161521730 -22766932 - L1MA10 LINE L1 -1 6333 6320 485 229 14 35 chr4 161521730 161521818 -22766844 - L1ME1 LINE L1 -5 6161 6076 5150 87 110 3 chr4 161521818 161522564 -22766098 + LTR12 LTR ERV1 1 826 0 485 229 14 35 chr4 161522564 161522619 -22766043 - L1ME1 LINE L1 -90 6076 6021 2441 107 8 6 chr4 161522667 161523021 -22765641 - THE1A LTR MaLR 0 355 1 568 305 75 25 chr4 161523036 161523684 -22764978 - L1ME1 LINE L1 -570 5594 4907 239 296 141 0 chr4 161523950 161524021 -22764641 - MER91A DNA MER1_type -10 186 106 6927 145 14 9 chr4 161524385 161525564 -22763098 + Tigger1 DNA MER2_type 1234 2418 0 183 138 60 30 chr4 161526573 161526740 -22761922 + (TA)n Simple_repeat Simple_repeat 2 173 0 201 222 0 0 chr4 161526750 161526786 -22761876 + (TG)n Simple_repeat Simple_repeat 1 36 0 224 172 17 0 chr4 161527321 161527379 -22761283 + T-rich Low_complexity Low_complexity 2 60 0 24 0 0 0 chr4 161527417 161527441 -22761221 + AT_rich Low_complexity Low_complexity 1 24 0 2279 78 0 0 chr4 161527823 161528177 -22760485 - AluY SINE Alu 0 354 1 323 322 74 0 chr4 161528801 161528922 -22759740 + L2 LINE L2 3138 3267 -5 688 287 109 16 chr4 161529311 161529765 -22758897 - L2 LINE L2 -157 3156 2660 599 299 142 23 chr4 161529869 161530264 -22758398 - MLT1K LTR MaLR -112 476 35 322 314 57 16 chr4 161530343 161530467 -22758195 + MER117 DNA MER1_type 21 149 -48 360 325 40 0 chr4 161530831 161530957 -22757705 - L2 LINE L2 -10 3262 3132 369 228 85 9 chr4 161531779 161531962 -22756700 - MER58 DNA MER1_type -5 2415 9 219 167 0 0 chr4 161533015 161533057 -22755605 + (TGGA)n Simple_repeat Simple_repeat 2 43 0 227 259 25 12 chr4 161533913 161533994 -22754668 + CT-rich Low_complexity Low_complexity 2 83 0 1163 86 12 0 chr4 161534102 161534265 -22754397 + L1PB1 LINE L1 5986 6150 -1 23 0 0 0 chr4 161534265 161534288 -22754374 + AT_rich Low_complexity Low_complexity 1 23 0 3888 204 30 14 chr4 161535328 161536571 -22752091 - L1M3 LINE L1 -566 5617 4353 850 206 80 5 chr4 161536687 161536747 -22751915 - MER20 DNA MER1_type 0 219 165 1612 197 3 23 chr4 161536747 161537051 -22751611 - AluJo SINE Alu -14 298 1 850 206 80 5 chr4 161537051 161537189 -22751473 - MER20 DNA MER1_type -54 165 6 450 251 110 36 chr4 161537345 161537564 -22751098 + MIR SINE MIR 20 254 -8 2339 125 0 0 chr4 161537743 161538055 -22750607 + AluSx SINE Alu 1 312 0 439 307 97 11 chr4 161538345 161538521 -22750141 + MIR SINE MIR 41 231 -31 1856 168 24 3 chr4 161538537 161538876 -22749786 + MLT1A1 LTR MaLR 18 363 -2 284 300 64 56 chr4 161539660 161539893 -22748769 + MLT1K LTR MaLR 154 388 -200 1489 253 74 21 chr4 161540489 161540561 -22748101 + MER21B LTR ERV1 283 350 -513 1626 168 70 24 chr4 161540561 161540889 -22747773 - MER61A LTR ERV1 0 343 1 1489 253 74 21 chr4 161540889 161541302 -22747360 + MER21B LTR ERV1 350 794 -69 343 283 22 0 chr4 161542032 161542124 -22746538 - L1ME1 LINE L1 -52 6114 6021 276 178 41 55 chr4 161542342 161542415 -22746247 + MIR SINE MIR 73 144 -118 347 301 158 6 chr4 161542431 161542614 -22746048 + L2 LINE L2 2488 2698 -616 2735 182 37 10 chr4 161542624 161543239 -22745423 + L1 LINE L1 3937 4568 -1578 867 262 73 11 chr4 161543622 161543897 -22744765 + MLT1J LTR MaLR 18 309 -202 1207 126 11 0 chr4 161544483 161544658 -22744004 + AluSx SINE Alu 1 177 -135 5662 106 23 0 chr4 161544758 161545627 -22743035 + L1PA14 LINE L1 5273 6161 0 194 324 93 29 chr4 161545628 161545767 -22742895 + L3 LINE CR1 298 445 -1132 553 189 9 0 chr4 161546775 161546886 -22741776 + L1MD2 LINE L1 6234 6345 -14 373 218 149 0 chr4 161547142 161547229 -22741433 - L2 LINE L2 -10 3262 3163 1421 218 20 22 chr4 161547597 161547706 -22740956 - MER63 DNA MER1_type 0 1061 953 2391 50 7 3 chr4 161547706 161548007 -22740655 + AluY SINE Alu 1 302 -9 1421 218 20 22 chr4 161548007 161548255 -22740407 - MER63 DNA MER1_type -108 953 705 322 85 34 34 chr4 161548361 161548420 -22740242 - MIR SINE MIR -122 140 82 218 310 113 80 chr4 161548660 161548899 -22739763 - MIR SINE MIR -4 258 12 1170 78 0 0 chr4 161549936 161550090 -22738572 + PABL_A LTR ERV1 507 660 0 1785 97 0 0 chr4 161550738 161550965 -22737697 + AluSq SINE Alu 1 227 -86 206 203 0 17 chr4 161551065 161551124 -22737538 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 * 326 163 0 12 chr4 161551123 161551203 -22737459 + GA-rich Low_complexity Low_complexity 2 80 0 229 275 38 15 chr4 161551574 161551705 -22736957 + L1M LINE L1 5295 5428 -2380 212 193 64 9 chr4 161552483 161552592 -22736070 + (TA)n Simple_repeat Simple_repeat 1 115 0 1426 73 0 0 chr4 161552681 161552860 -22735802 + AluY SINE Alu 133 311 0 25 0 0 0 chr4 161552889 161552914 -22735748 + AT_rich Low_complexity Low_complexity 1 25 0 50 31 0 0 chr4 161553010 161553074 -22735588 + AT_rich Low_complexity Low_complexity 1 64 0 406 141 35 0 chr4 161553204 161553289 -22735373 + GA-rich Low_complexity Low_complexity 1 88 0 201 319 83 99 chr4 161553567 161553880 -22734782 + L2 LINE L2 2963 3270 -2 24 32 0 0 chr4 161553880 161553911 -22734751 + AT_rich Low_complexity Low_complexity 1 31 0 190 264 19 0 chr4 161554033 161554086 -22734576 + L2 LINE L2 1745 1798 -1516 1125 194 66 130 chr4 161554098 161554629 -22734033 + MLT1D LTR MaLR 9 505 0 540 302 25 0 chr4 161554635 161554794 -22733868 + L2 LINE L2 1805 1967 -1347 431 259 105 57 chr4 161555014 161555261 -22733401 + L1M4 LINE L1 4289 4547 -1599 825 106 7 35 chr4 161555814 161555956 -22732706 + AluSp/q SINE Alu 176 313 0 1048 70 28 0 chr4 161556441 161556583 -22732079 + THE1B LTR MaLR 3 148 -216 2568 117 0 14 chr4 161556707 161557076 -22731586 - THE1B LTR MaLR 0 364 1 1494 206 76 0 chr4 161557249 161557526 -22731136 + AluSx SINE Alu 1 298 -14 2373 84 0 10 chr4 161558016 161558325 -22730337 + AluY SINE Alu 1 306 -5 717 245 6 0 chr4 161558356 161558519 -22730143 - MER58B DNA MER1_type 0 341 178 2341 65 3 3 chr4 161558525 161558819 -22729843 + AluY SINE Alu 1 294 -17 544 309 76 43 chr4 161560587 161560715 -22727947 - MLT1G3 LTR MaLR -2 528 406 7817 54 32 4 chr4 161560715 161561007 -22727655 - LTR13 LTR ERVK 0 1007 725 185 0 40 0 chr4 161561007 161561032 -22727630 + (GA)n Simple_repeat Simple_repeat 1 26 0 7817 54 32 4 chr4 161561032 161561719 -22726943 - LTR13 LTR ERVK -282 725 1 544 309 76 43 chr4 161561719 161562111 -22726551 - MLT1G3 LTR MaLR -124 406 1 3196 190 25 3 chr4 161562378 161564935 -22723727 + L1PA15 LINE L1 3274 6016 -149 391 276 19 9 chr4 161565402 161565507 -22723155 + L2 LINE L2 3200 3305 -8 633 227 6 86 chr4 161566310 161566473 -22722189 - FAM SINE Alu -35 150 1 21 36 0 0 chr4 161566473 161566501 -22722161 + AT_rich Low_complexity Low_complexity 1 28 0 981 261 85 29 chr4 161566886 161567346 -22721316 - MLT2B1 LTR ERVL -29 468 1 24 0 0 0 chr4 161567871 161567895 -22720767 + AT_rich Low_complexity Low_complexity 1 24 0 819 224 10 55 chr4 161568234 161568435 -22720227 + MIR SINE MIR 7 198 -64 196 293 179 28 chr4 161569695 161569801 -22718861 - L2 LINE L2 -1019 2295 2174 974 285 51 40 chr4 161569883 161570311 -22718351 - L2 LINE L2 -1279 2035 1603 1857 182 14 25 chr4 161571748 161572171 -22716491 - MLT2D LTR ERVL -8 512 1 1391 209 39 16 chr4 161572692 161573056 -22715606 + L1MC1 LINE L1 4741 5112 -1034 4694 172 50 2 chr4 161573163 161574128 -22714534 + L1MC1 LINE L1 5322 6332 -1 346 339 54 45 chr4 161574662 161574904 -22713758 - L1ME LINE L1 -362 5800 5557 224 280 0 0 chr4 161576103 161576153 -22712509 - MIR3 SINE MIR -35 173 124 1873 119 49 82 chr4 161576394 161576782 -22711880 + THE1C LTR MaLR 1 375 0 23 54 0 0 chr4 161577302 161577339 -22711323 + AT_rich Low_complexity Low_complexity 1 37 0 723 283 67 22 chr4 161577618 161577841 -22710821 + MIR SINE MIR 6 238 -24 503 16 0 0 chr4 161578029 161578091 -22710571 + AluY SINE Alu 1 62 -256 308 111 19 0 chr4 161578191 161578245 -22710417 + (TTCCC)n Simple_repeat Simple_repeat 3 57 0 1518 99 5 0 chr4 161578246 161578459 -22710203 - L1PA8 LINE L1 -18 6154 5941 878 280 76 30 chr4 161578465 161578872 -22709790 + LTR47B LTR ERVL 18 443 0 523 247 67 11 chr4 161579063 161579241 -22709421 + LTR41 LTR ERVL 3 190 -583 304 246 8 41 chr4 161579669 161579791 -22708871 + LTR41 LTR ERVL 650 767 -6 4922 89 1 5 chr4 161579921 161580583 -22708079 + PABL_A LTR ERV1 1 660 0 5807 106 6 44 chr4 161580583 161581517 -22707145 + PABL_A-int LTR ERV1 1 899 -4116 3221 63 11 104 chr4 161581509 161582064 -22706598 + PABL_A-int LTR ERV1 1151 1653 -3362 * 532 191 67 6 chr4 161582064 161582273 -22706389 - LTR8 LTR ERV1 -438 253 1 19723 77 28 7 chr4 161582274 161585301 -22703361 + PABL_A-int LTR ERV1 1863 5015 0 1956 78 4 19 chr4 161585301 161585571 -22703091 + PABL_A LTR ERV1 1 266 -394 742 262 78 86 chr4 161585672 161586057 -22702605 - MER41C LTR ERV1 -172 382 1 200 316 0 51 chr4 161586604 161586683 -22701979 + MIR SINE MIR 68 142 -120 2010 79 26 0 chr4 161587128 161587307 -22701355 - AluY SINE Alu 0 311 121 238 0 81 0 chr4 161587307 161587344 -22701318 + T-rich Low_complexity Low_complexity 5 44 0 2010 79 26 0 chr4 161587344 161587430 -22701232 - AluY SINE Alu -190 121 39 3288 193 121 6 chr4 161588274 161589076 -22699586 + L1PB3 LINE L1 5254 6147 -7 7001 131 29 25 chr4 161589867 161591092 -22697570 - Tigger3b DNA MER2_type 0 1231 2 330 298 62 62 chr4 161592676 161592948 -22695714 + L1ME LINE L1 576 874 -5223 884 230 233 6 chr4 161593298 161593793 -22694869 + MLT1E1 LTR MaLR 1 654 0 227 227 0 30 chr4 161594933 161594999 -22693663 + (CATATA)n Simple_repeat Simple_repeat 4 67 0 1999 217 82 0 chr4 161596568 161596997 -22691665 - MLT2C2 LTR ERVL 0 464 1 3320 162 27 1 chr4 161597956 161598898 -22689764 + L1P5 LINE L1 4622 5584 -567 263 203 16 0 chr4 161599349 161599413 -22689249 + (TA)n Simple_repeat Simple_repeat 2 66 0 239 321 12 0 chr4 161600082 161600166 -22688496 - MIR SINE MIR -10 252 168 39 84 0 0 chr4 161600355 161600450 -22688212 + AT_rich Low_complexity Low_complexity 1 95 0 204 133 67 0 chr4 161601644 161601689 -22686973 + T-rich Low_complexity Low_complexity 3 50 0 2403 140 21 41 chr4 161601724 161601926 -22686736 + MSTA LTR MaLR 1 206 -222 2365 71 3 3 chr4 161601926 161602223 -22686439 + AluY SINE Alu 1 297 -14 2403 140 21 41 chr4 161602223 161602457 -22686205 + MSTA LTR MaLR 206 428 0 229 281 0 0 chr4 161602652 161602716 -22685946 + L1MDb LINE L1 909 972 -5571 577 302 23 10 chr4 161602749 161602960 -22685702 + L1MDb LINE L1 1030 1248 -5295 2251 81 3 17 chr4 161602960 161603258 -22685404 + AluY SINE Alu 1 294 -17 577 302 23 10 chr4 161603258 161603354 -22685308 + L1MDb LINE L1 1248 1341 -5202 657 238 128 21 chr4 161603358 161603639 -22685023 + L1MDb LINE L1 1557 1867 -4673 2571 122 28 41 chr4 161603647 161604113 -22684549 + LTR46 LTR ERV1 1 460 0 3589 143 3 9 chr4 161604113 161604695 -22683967 + LTR46-int LTR ERV1 1 579 -6406 5659 150 34 15 chr4 161604817 161605401 -22683261 + LTR46-int LTR ERV1 658 1203 -5782 1938 119 49 0 chr4 161605401 161605686 -22682976 - AluSx SINE Alu 0 312 14 5659 150 34 15 chr4 161605686 161606171 -22682491 + LTR46-int LTR ERV1 1203 1677 -5308 672 147 0 0 chr4 161606176 161606278 -22682384 + AluS SINE Alu 1 102 -210 970 131 0 0 chr4 161606278 161606423 -22682239 + LTR46-int LTR ERV1 3745 3889 -3096 922 246 15 0 chr4 161606423 161606622 -22682040 + MLT1E1 LTR MaLR 453 654 0 430 295 133 22 chr4 161606622 161606937 -22681725 - L1MDa LINE L1 -2531 4009 3660 728 271 81 26 chr4 161606994 161607631 -22681031 - L1MDa LINE L1 -4122 2599 1870 1193 291 98 7 chr4 161607641 161608047 -22680615 - MLT1E1 LTR MaLR -211 443 1 1320 282 70 21 chr4 161608072 161608547 -22680115 + L1MD2 LINE L1 5617 6114 -245 25 0 0 0 chr4 161608597 161608622 -22680040 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 161608650 161608672 -22679990 + AT_rich Low_complexity Low_complexity 1 22 0 571 259 49 13 chr4 161608694 161608875 -22679787 - L1MC5 LINE L1 -1005 6809 6618 2078 196 84 85 chr4 161609658 161610384 -22678278 - MER50 LTR ERV1 0 734 10 187 26 0 79 chr4 161611004 161611042 -22677620 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 26 30 0 0 chr4 161612632 161612665 -22675997 + AT_rich Low_complexity Low_complexity 1 33 0 1356 137 159 0 chr4 161612677 161612947 -22675715 + L1MC1 LINE L1 6021 6333 0 2419 47 0 3 chr4 161613315 161613611 -22675051 - AluY SINE Alu -16 295 1 24 0 0 0 chr4 161613962 161613986 -22674676 + AT_rich Low_complexity Low_complexity 1 24 0 1028 122 5 32 chr4 161614657 161614846 -22673816 - L1MA4 LINE L1 -6 6294 6111 1199 117 0 11 chr4 161614847 161615027 -22673635 + L1MA4 LINE L1 5821 5998 -302 228 333 152 8 chr4 161615928 161616060 -22672602 - L3 LINE CR1 -31 1546 1396 377 331 48 8 chr4 161616169 161616293 -22672369 + L2 LINE L2 3179 3307 -6 391 239 55 9 chr4 161616419 161616528 -22672134 - MLT1J LTR MaLR 0 511 398 21 0 0 0 chr4 161616667 161616688 -22671974 + AT_rich Low_complexity Low_complexity 1 21 0 302 323 0 0 chr4 161616761 161616854 -22671808 + MLT1J LTR MaLR 20 112 -399 23 68 0 0 chr4 161616854 161616898 -22671764 + AT_rich Low_complexity Low_complexity 1 44 0 379 338 27 0 chr4 161617025 161617173 -22671489 + MLT1J LTR MaLR 120 271 -240 212 158 26 0 chr4 161617860 161617898 -22670764 + (TG)n Simple_repeat Simple_repeat 2 40 0 1327 333 158 20 chr4 161618318 161618717 -22669945 + L1PA8 LINE L1 5717 6170 -2 405 39 0 0 chr4 161619756 161619807 -22668855 + (CA)n Simple_repeat Simple_repeat 2 52 0 396 55 0 0 chr4 161620283 161620338 -22668324 + (TA)n Simple_repeat Simple_repeat 2 56 0 207 313 10 20 chr4 161620852 161620951 -22667711 + CT-rich Low_complexity Low_complexity 3 100 0 2396 76 0 0 chr4 161621455 161621759 -22666903 - AluY SINE Alu -7 304 1 1939 129 11 0 chr4 161622137 161622417 -22666245 - AluSx SINE Alu -9 303 21 22 56 0 0 chr4 161622656 161622692 -22665970 + AT_rich Low_complexity Low_complexity 1 36 0 387 286 10 0 chr4 161622724 161622822 -22665840 - MIR3 SINE MIR -9 199 101 300 295 134 64 chr4 161623120 161623479 -22665183 - MLT1J LTR MaLR -19 492 109 570 314 77 15 chr4 161623568 161623829 -22664833 - L2 LINE L2 -98 3215 2939 26 0 0 0 chr4 161623877 161623903 -22664759 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr4 161624882 161624913 -22663749 + AT_rich Low_complexity Low_complexity 1 31 0 198 0 0 0 chr4 161625210 161625232 -22663430 + (T)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr4 161627348 161627370 -22661292 + AT_rich Low_complexity Low_complexity 1 22 0 214 320 17 80 chr4 161629426 161629601 -22659061 - MIR SINE MIR -26 236 73 427 364 29 29 chr4 161631003 161631319 -22657343 - L2 LINE L2 -385 2929 2614 2414 334 85 49 chr4 161631377 161633521 -22655141 + L2 LINE L2 772 3065 -248 217 305 134 27 chr4 161633582 161633805 -22654857 - L2 LINE L2 -1059 2255 2009 2198 115 3 0 chr4 161633841 161634137 -22654525 - AluSp SINE Alu -16 297 1 360 316 0 0 chr4 161684618 161684735 -22603927 - MLT1I LTR MaLR -210 199 83 203 109 65 22 chr4 161684799 161684845 -22603817 + (CATATA)n Simple_repeat Simple_repeat 6 53 0 2039 137 3 0 chr4 161684958 161685265 -22603397 + AluSx SINE Alu 1 308 -4 219 320 92 26 chr4 161685281 161685434 -22603228 + L3b LINE CR1 1276 1438 -145 205 271 17 17 chr4 161686109 161686168 -22602494 + L3 LINE CR1 1492 1550 -27 28 60 0 15 chr4 161686211 161686240 -22602422 + AT_rich Low_complexity Low_complexity 1 29 -37 2199 108 0 0 chr4 161686240 161686528 -22602134 + AluSc SINE Alu 1 288 -21 28 60 0 15 chr4 161686528 161686565 -22602097 + AT_rich Low_complexity Low_complexity 29 66 0 30 27 0 0 chr4 161686618 161686655 -22602007 + AT_rich Low_complexity Low_complexity 1 37 0 180 0 0 0 chr4 161686928 161686948 -22601714 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1198 196 9 0 chr4 161686980 161687204 -22601458 - AluJb SINE Alu -1 311 86 429 143 42 39 chr4 161687362 161687725 -22600937 + (TA)n Simple_repeat Simple_repeat 1 364 0 250 194 65 18 chr4 161687763 161687933 -22600729 + (TA)n Simple_repeat Simple_repeat 2 179 0 358 153 71 24 chr4 161687960 161688130 -22600532 + (TA)n Simple_repeat Simple_repeat 2 179 0 348 169 74 18 chr4 161688130 161688404 -22600258 + (CATATA)n Simple_repeat Simple_repeat 1 289 0 * 410 150 54 24 chr4 161688388 161688555 -22600107 + (TA)n Simple_repeat Simple_repeat 2 173 0 384 324 80 40 chr4 161688746 161689120 -22599542 + L1ME LINE L1 65 453 -5617 886 242 12 29 chr4 161689441 161689681 -22598981 + L1ME2 LINE L1 5919 6154 -10 31 0 0 0 chr4 161690517 161690548 -22598114 + AT_rich Low_complexity Low_complexity 1 31 0 184 323 89 57 chr4 161690801 161690925 -22597737 - MIR3 SINE MIR -34 174 47 1803 176 67 43 chr4 161692272 161692628 -22596034 + MLT2D LTR ERVL 4 371 -43 405 58 0 0 chr4 161692628 161692680 -22595982 + (CA)n Simple_repeat Simple_repeat 1 52 0 1803 176 67 43 chr4 161692680 161692714 -22595948 + MLT2D LTR ERVL 371 403 -11 401 314 98 0 chr4 161693907 161694060 -22594602 - MER45A DNA AcHobo -7 171 4 351 363 7 0 chr4 161694063 161694209 -22594453 - L3 LINE CR1 -63 1514 1368 761 213 203 18 chr4 161694567 161694853 -22593809 + MER44D DNA MER2_type 1 609 0 37 62 0 0 chr4 161696133 161696198 -22592464 + AT_rich Low_complexity Low_complexity 1 65 0 21 36 0 0 chr4 161696476 161696504 -22592158 + AT_rich Low_complexity Low_complexity 1 28 0 408 320 85 66 chr4 161696833 161697258 -22591404 - L2 LINE L2 -383 2931 2499 191 232 424 0 chr4 161697449 161697548 -22591114 - MIR3 SINE MIR -31 177 37 313 167 0 17 chr4 161698309 161698369 -22590293 - L1MC4 LINE L1 -1336 6706 6648 194 266 31 31 chr4 161699729 161699793 -22588869 - L2 LINE L2 0 3313 3250 483 165 126 19 chr4 161699893 161699996 -22588666 + FLAM_A SINE Alu 21 134 -8 31 68 0 0 chr4 161701205 161701264 -22587398 + AT_rich Low_complexity Low_complexity 1 59 0 300 27 0 0 chr4 161702655 161702692 -22585970 + (TG)n Simple_repeat Simple_repeat 2 38 0 5562 31 1 6 chr4 161703561 161704613 -22584049 - L1P2 LINE L1 -396 5759 4712 4883 51 0 0 chr4 161704611 161705219 -22583443 + L1P LINE L1 1685 2292 -3854 * 1835 5 0 0 chr4 161705212 161705422 -22583240 - L1P1 LINE L1 -622 5533 5324 * 5438 8 0 0 chr4 161705422 161706035 -22582627 + L1HS LINE L1 5543 6155 0 7111 36 2 0 chr4 161706054 161706947 -22581715 + L1P LINE L1 2273 3167 -2979 879 133 60 7 chr4 161706987 161707138 -22581524 - MLT1A1 LTR MaLR -202 163 5 519 220 89 30 chr4 161707145 161707313 -22581349 - MER92C LTR ERV1 -166 388 211 381 320 8 8 chr4 161707888 161708010 -22580652 + L2 LINE L2 3192 3313 0 35 71 0 0 chr4 161710068 161710138 -22578524 + AT_rich Low_complexity Low_complexity 1 70 0 23 33 0 0 chr4 161710176 161710206 -22578456 + AT_rich Low_complexity Low_complexity 1 30 0 1223 229 106 85 chr4 161710569 161711089 -22577573 - MLT1F LTR MaLR -1 541 11 206 241 0 17 chr4 161711234 161711292 -22577370 + CT-rich Low_complexity Low_complexity 2 58 0 22 0 0 0 chr4 161711786 161711808 -22576854 + AT_rich Low_complexity Low_complexity 1 22 0 5780 109 3 19 chr4 161712763 161713647 -22575015 + L1PA13 LINE L1 5292 6161 -2 245 347 41 20 chr4 161713662 161713760 -22574902 - MIR SINE MIR -65 143 44 28 29 0 0 chr4 161713818 161713853 -22574809 + AT_rich Low_complexity Low_complexity 1 35 0 6090 148 38 20 chr4 161714423 161715529 -22573133 + Tigger3b DNA MER2_type 1 1126 -105 1393 184 68 59 chr4 161715768 161716207 -22572455 - L1M2 LINE L1 -607 5705 5263 11264 223 19 12 chr4 161717156 161720079 -22568583 + L1PA16 LINE L1 2318 5270 -896 1392 193 207 8 chr4 161720079 161720436 -22568226 + MSTA LTR MaLR 1 428 0 11264 223 19 12 chr4 161720436 161721122 -22567540 + L1PA16 LINE L1 5270 5950 -216 1979 154 62 0 chr4 161721556 161721894 -22566768 + MER47A DNA MER2_type 8 366 0 334 365 65 4 chr4 161722791 161723021 -22565641 + L1MEd LINE L1 101 344 -5775 246 273 0 20 chr4 161723316 161723415 -22565247 + L1MC4 LINE L1 6614 6710 -1332 188 329 98 69 chr4 161724198 161724617 -22564045 - L2 LINE L2 -1597 1717 1287 2399 47 0 13 chr4 161724699 161724999 -22563663 - AluY SINE Alu -15 296 1 264 59 0 0 chr4 161725542 161725576 -22563086 + (TG)n Simple_repeat Simple_repeat 2 35 0 26 0 0 0 chr4 161725674 161725700 -22562962 + AT_rich Low_complexity Low_complexity 1 26 0 293 199 47 47 chr4 161725870 161726041 -22562621 + (CATATA)n Simple_repeat Simple_repeat 4 174 0 28 48 0 0 chr4 161726180 161726222 -22562440 + AT_rich Low_complexity Low_complexity 1 42 0 257 281 61 70 chr4 161726320 161726434 -22562228 - MIR SINE MIR -35 227 115 579 105 0 0 chr4 161728270 161728356 -22560306 + L1PA8 LINE L1 6087 6172 0 251 259 9 18 chr4 161728358 161728470 -22560192 + Charlie7 DNA MER1_type 2459 2569 -43 969 286 49 35 chr4 161728587 161729135 -22559527 - L1ME3A LINE L1 -66 6104 5549 477 207 29 36 chr4 161729180 161729320 -22559342 + L1ME2 LINE L1 4533 4671 -1475 1039 216 136 0 chr4 161729324 161729588 -22559074 + AluJo SINE Alu 12 311 -1 320 217 0 48 chr4 161729592 161729675 -22558987 - L1 LINE L1 -2166 3980 3902 5423 176 20 67 chr4 161729737 161730975 -22557687 + L1PA16 LINE L1 3964 5025 -1141 2076 140 0 0 chr4 161730975 161731275 -22557387 - AluSp SINE Alu -13 300 1 5423 176 20 67 chr4 161731275 161732357 -22556305 + L1PA16 LINE L1 5025 6156 -10 1335 280 159 10 chr4 161732371 161733018 -22555644 + L1ME2 LINE L1 5427 6163 -1 315 324 163 18 chr4 161733687 161734073 -22554589 - L2 LINE L2 -879 2435 1994 272 254 64 0 chr4 161734171 161734281 -22554381 - L1MCc LINE L1 -6277 146 30 1501 249 64 0 chr4 161734297 161734670 -22553992 + MER99 DNA DNA 429 825 -3 213 371 43 13 chr4 161734687 161734919 -22553743 - L2 LINE L2 -2544 770 532 215 257 0 43 chr4 161735007 161735077 -22553585 - MIR SINE MIR -18 244 178 3716 189 31 57 chr4 161735583 161736578 -22552084 - LTR5 LTR ERVK 0 969 1 32 67 0 0 chr4 161736736 161736796 -22551866 + AT_rich Low_complexity Low_complexity 1 60 0 315 314 0 105 chr4 161736799 161736952 -22551710 - L2 LINE L2 -2 3270 3134 1730 150 10 20 chr4 161737181 161737487 -22551175 - AluSx SINE Alu -9 303 1 765 342 85 12 chr4 161737528 161737940 -22550722 - L2 LINE L2 -340 2974 2533 533 313 19 28 chr4 161738739 161738950 -22549712 + MIR SINE MIR 20 228 -34 417 346 53 33 chr4 161740112 161740360 -22548302 - MIR SINE MIR -4 258 8 21 0 0 0 chr4 161740944 161740965 -22547697 + AT_rich Low_complexity Low_complexity 1 21 0 2255 316 136 35 chr4 161741044 161742372 -22546290 + L2 LINE L2 1509 2971 -343 238 250 204 0 chr4 161742498 161742586 -22546076 + L2 LINE L2 3197 3302 -11 225 0 0 0 chr4 161742588 161742613 -22546049 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 2378 52 0 3 chr4 161742668 161742954 -22545708 + AluY SINE Alu 1 285 -26 330 26 0 0 chr4 161742954 161742993 -22545669 + (TTAAA)n Simple_repeat Simple_repeat 3 41 0 264 188 0 0 chr4 161743878 161743942 -22544720 + G-rich Low_complexity Low_complexity 3 66 0 528 192 58 0 chr4 161744139 161744243 -22544419 - Tigger5 DNA MER2_type 0 2323 2214 458 143 71 0 chr4 161744241 161744325 -22544337 - Tigger5 DNA MER2_type -2233 90 1 * 798 158 13 7 chr4 161744537 161744689 -22543973 - L1MB3 LINE L1 -4 6179 6027 351 113 0 0 chr4 161744741 161744816 -22543846 + (TG)n Simple_repeat Simple_repeat 1 128 0 351 113 0 0 chr4 161744816 161744869 -22543793 + (TG)n Simple_repeat Simple_repeat 2 54 0 240 100 0 0 chr4 161744883 161744923 -22543739 + (GA)n Simple_repeat Simple_repeat 2 41 0 1760 169 13 0 chr4 161744950 161745257 -22543405 + AluSx SINE Alu 1 311 -1 3915 182 31 38 chr4 161746046 161746811 -22541851 + MER52A LTR ERV1 996 1755 0 1680 203 61 3 chr4 161749937 161750282 -22538380 + MLT1A1 LTR MaLR 1 365 0 255 336 27 0 chr4 161750591 161750701 -22537961 - MIR3 SINE MIR -4 204 92 262 319 35 18 chr4 161751806 161751919 -22536743 - L2 LINE L2 -5 3308 3194 747 261 119 29 chr4 161751924 161752234 -22536428 - MER58B DNA MER1_type 0 341 4 2748 16 0 10 chr4 161752907 161753221 -22535441 - AluY SINE Alu 0 311 1 25 31 0 0 chr4 161753226 161753258 -22535404 + AT_rich Low_complexity Low_complexity 1 32 0 28 48 0 0 chr4 161754285 161754327 -22534335 + AT_rich Low_complexity Low_complexity 1 42 0 2318 74 0 0 chr4 161754609 161754929 -22533733 - AluY SINE Alu 0 320 1 694 204 6 42 chr4 161755567 161755734 -22532928 + MLT2B1 LTR ERVL 1 161 -359 524 229 66 71 chr4 161755736 161755982 -22532680 + MLT2B1 LTR ERVL 266 520 0 39 74 0 0 chr4 161756000 161756081 -22532581 + AT_rich Low_complexity Low_complexity 1 81 0 5328 141 33 15 chr4 161756339 161756420 -22532242 - L1PB1 LINE L1 0 6151 6073 2104 106 6 13 chr4 161756420 161756731 -22531931 - AluSx SINE Alu -3 309 1 5328 141 33 15 chr4 161756731 161757774 -22530888 - L1PB1 LINE L1 -78 6073 5001 2445 169 14 5 chr4 161757769 161758207 -22530455 - L1M2 LINE L1 -531 5760 5319 * 4986 189 23 11 chr4 161758214 161760127 -22528535 - L1PB4 LINE L1 0 6156 4216 1727 221 27 37 chr4 161760126 161760892 -22527770 - L1M2 LINE L1 -821 5325 2452 * 887 126 8 0 chr4 161761296 161761423 -22527239 - AluSg/x SINE Alu -19 293 166 560 123 0 0 chr4 161761425 161761506 -22527156 + AluSq/x SINE Alu 53 133 -179 346 208 107 95 chr4 161761555 161761723 -22526939 - MIR SINE MIR -3 259 90 740 284 39 8 chr4 161762106 161762360 -22526302 + L1ME3A LINE L1 5903 6164 -6 22 56 0 0 chr4 161762647 161762683 -22525979 + AT_rich Low_complexity Low_complexity 1 36 0 505 252 25 25 chr4 161763172 161763331 -22525331 - LTR65 LTR ERV1 -502 167 9 32 75 0 0 chr4 161763477 161763544 -22525118 + AT_rich Low_complexity Low_complexity 1 67 0 24 0 0 0 chr4 161763729 161763753 -22524909 + AT_rich Low_complexity Low_complexity 1 24 0 369 208 8 24 chr4 161764082 161764207 -22524455 + CT-rich Low_complexity Low_complexity 2 124 0 21 0 0 0 chr4 161764501 161764522 -22524140 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 161764585 161764606 -22524056 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr4 161765258 161765284 -22523378 + AT_rich Low_complexity Low_complexity 1 26 0 367 304 35 81 chr4 161765628 161765888 -22522774 + MLT1K LTR MaLR 305 552 -36 825 230 5 142 chr4 161766032 161766406 -22522256 + MLT1A1 LTR MaLR 1 323 -42 1513 225 0 0 chr4 161766409 161766689 -22521973 + AluJb SINE Alu 3 282 -30 344 299 98 11 chr4 161766914 161767098 -22521564 - LTR16B LTR ERVL 0 464 265 379 333 14 7 chr4 161767151 161767295 -22521367 - LTR16B LTR ERVL -308 156 12 206 351 36 36 chr4 161767459 161767570 -22521092 - L2 LINE L2 -219 3053 2943 2260 88 3 0 chr4 161767597 161767893 -22520769 + AluSx SINE Alu 1 297 -15 594 64 11 21 chr4 161768015 161768109 -22520553 + L1MA5 LINE L1 6206 6298 -2 1950 137 0 3 chr4 161768112 161768423 -22520239 + AluSx SINE Alu 1 310 0 540 239 46 46 chr4 161768731 161768928 -22519734 + MIR SINE MIR 1 197 -65 186 43 0 0 chr4 161768937 161768960 -22519702 + (TTA)n Simple_repeat Simple_repeat 2 24 0 334 44 0 0 chr4 161769165 161769210 -22519452 + MADE1 DNA Mariner 36 80 0 378 0 0 0 chr4 161769451 161769493 -22519169 + (TG)n Simple_repeat Simple_repeat 1 42 0 283 181 0 28 chr4 161769687 161769759 -22518903 - HAL1 LINE L1 -174 2333 2264 4206 144 4 39 chr4 161769977 161770775 -22517887 - L1MA4A LINE L1 -5 6298 5529 684 304 96 55 chr4 161770912 161771474 -22517188 - HAL1 LINE L1 -616 1891 1307 235 282 56 46 chr4 161772098 161772403 -22516259 - HAL1 LINE L1 -1207 1300 993 1641 129 12 106 chr4 161773062 161773403 -22515259 - AluJo SINE Alu -3 309 1 281 312 59 41 chr4 161773403 161773573 -22515089 - HAL1 LINE L1 -2334 173 1 2360 90 3 3 chr4 161774108 161774419 -22514243 + AluSp SINE Alu 1 311 -2 197 59 59 0 chr4 161774620 161774654 -22514008 + A-rich Low_complexity Low_complexity 4 39 0 215 29 88 0 chr4 161774840 161774874 -22513788 + T-rich Low_complexity Low_complexity 2 38 0 3769 33 4 0 chr4 161774875 161775327 -22513335 - L1PA3 LINE L1 -3 6152 5699 23 33 0 0 chr4 161775424 161775454 -22513208 + AT_rich Low_complexity Low_complexity 1 30 0 239 0 0 31 chr4 161775454 161775486 -22513176 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2021 91 0 37 chr4 161775489 161775785 -22512877 - AluY SINE Alu -26 285 1 22 35 0 0 chr4 161777197 161777226 -22511436 + AT_rich Low_complexity Low_complexity 1 29 0 1004 68 8 0 chr4 161777542 161777675 -22510987 + L1PA7 LINE L1 6016 6149 -5 205 272 88 53 chr4 161778134 161778248 -22510414 + MIR SINE MIR 101 218 -44 1215 57 23 6 chr4 161778579 161778755 -22509907 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 264 100 0 0 chr4 161780112 161780152 -22508510 + (TCCC)n Simple_repeat Simple_repeat 1 40 0 237 278 0 0 chr4 161780152 161780206 -22508456 - L2 LINE L2 -5 3267 3214 21 57 0 0 chr4 161780565 161780600 -22508062 + AT_rich Low_complexity Low_complexity 1 35 0 305 286 54 54 chr4 161780774 161780959 -22507703 + MIR SINE MIR 78 262 0 236 219 125 31 chr4 161781401 161781497 -22507165 - L1MC5 LINE L1 -1089 6872 6768 21 0 0 0 chr4 161782090 161782111 -22506551 + AT_rich Low_complexity Low_complexity 1 21 0 245 271 19 75 chr4 161783828 161783935 -22504727 + L2 LINE L2 3205 3305 -8 21 0 0 0 chr4 161784120 161784141 -22504521 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr4 161785748 161785774 -22502888 + AT_rich Low_complexity Low_complexity 1 26 0 253 268 0 0 chr4 161786169 161786225 -22502437 + MLT1I LTR MaLR 303 358 -51 420 366 11 0 chr4 161787547 161787722 -22500940 + ERVL LTR ERVL 1695 1871 -3125 303 333 42 30 chr4 161787869 161788133 -22500529 + ERVL LTR ERVL 3765 4031 -1733 2896 165 84 0 chr4 161788399 161788937 -22499725 + L1PA16 LINE L1 5583 6165 -1 339 344 32 6 chr4 161788959 161789116 -22499546 + ERVL LTR ERVL 4777 4937 -827 1864 189 81 0 chr4 161789216 161789612 -22499050 + MSTA LTR MaLR 1 428 0 259 318 183 0 chr4 161790641 161790893 -22497769 + L2 LINE L2 2471 2768 -546 27 0 0 0 chr4 161791109 161791136 -22497526 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr4 161792339 161792360 -22496302 + AT_rich Low_complexity Low_complexity 1 21 0 1803 145 11 71 chr4 161792995 161793360 -22495302 + MER2 DNA MER2_type 2 344 0 180 0 0 0 chr4 161793684 161793704 -22494958 + (TATAA)n Simple_repeat Simple_repeat 5 24 0 928 266 40 121 chr4 161794146 161794805 -22493857 - MER21B LTR ERV1 -161 702 98 1966 217 36 74 chr4 161795200 161795732 -22492930 + L1MDa LINE L1 1649 2149 -4391 1795 179 0 3 chr4 161795732 161796044 -22492618 + AluJb SINE Alu 1 311 -1 1966 217 36 74 chr4 161796044 161796231 -22492431 + L1MDa LINE L1 2149 2341 -4199 593 268 83 109 chr4 161796233 161796460 -22492202 - L2 LINE L2 -547 2767 2550 2747 145 60 4 chr4 161796460 161796964 -22491698 - L1MA5 LINE L1 -1 6299 5768 593 268 83 109 chr4 161796964 161797075 -22491587 - L2 LINE L2 -764 2550 2438 498 252 9 0 chr4 161797413 161797528 -22491134 + MER54B LTR ERVL 485 600 -193 341 182 0 0 chr4 161797519 161797585 -22491077 + MER54B LTR ERVL 728 793 0 * 185 154 26 0 chr4 161797614 161797653 -22491009 + (TA)n Simple_repeat Simple_repeat 1 40 0 293 219 32 41 chr4 161797687 161797810 -22490852 + (TA)n Simple_repeat Simple_repeat 1 122 0 815 320 43 20 chr4 161797812 161798206 -22490456 - L2 LINE L2 -1041 2273 1871 24 32 0 0 chr4 161799278 161799309 -22489353 + AT_rich Low_complexity Low_complexity 1 31 0 207 0 0 0 chr4 161799563 161799586 -22489076 + (CA)n Simple_repeat Simple_repeat 2 24 0 2407 104 0 0 chr4 161799924 161800269 -22488393 - L1PA13 LINE L1 0 6163 5819 1980 284 49 14 chr4 161800371 161801006 -22487656 - ERVL LTR ERVL -2192 3572 2916 879 244 53 10 chr4 161801010 161801219 -22487443 + MER58A DNA MER1_type 7 224 0 1246 252 33 3 chr4 161801219 161801552 -22487110 - ERVL LTR ERVL -2839 2925 2583 1641 304 28 4 chr4 161801699 161802235 -22486427 - ERVL LTR ERVL -3090 2674 2126 881 195 183 72 chr4 161802406 161802739 -22485923 + MLT1A2 LTR MaLR 1 370 -4 410 167 0 0 chr4 161802742 161802808 -22485854 + MLT1A2-int LTR MaLR 1 66 -1305 424 256 11 0 chr4 161802810 161802900 -22485762 + MLT1A2-int LTR MaLR 379 469 -1266 26 50 0 0 chr4 161803091 161803131 -22485531 + AT_rich Low_complexity Low_complexity 1 40 0 6918 147 34 4 chr4 161803313 161804500 -22484162 + Tigger3b DNA MER2_type 1 1222 -9 25 0 0 0 chr4 161805640 161805665 -22482997 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr4 161805777 161805805 -22482857 + AT_rich Low_complexity Low_complexity 1 28 0 293 274 85 28 chr4 161806088 161806194 -22482468 + MIR SINE MIR 36 147 -115 211 293 0 0 chr4 161806226 161806284 -22482378 + MIR SINE MIR 104 161 -101 1184 273 134 30 chr4 161807948 161808513 -22480149 - MLT1E2 LTR MaLR 0 626 3 923 298 113 36 chr4 161808550 161809326 -22479336 - L1M4 LINE L1 -2639 3507 2672 2416 57 3 0 chr4 161809357 161809658 -22479004 - AluY SINE Alu -9 302 1 24 0 0 0 chr4 161810085 161810109 -22478553 + AT_rich Low_complexity Low_complexity 1 24 0 372 275 83 70 chr4 161811074 161811401 -22477261 + L1ME LINE L1 5043 5373 -773 232 343 0 0 chr4 161811499 161811566 -22477096 + L1ME LINE L1 5579 5645 -525 2031 125 68 31 chr4 161811582 161811933 -22476729 + THE1B LTR MaLR 1 364 0 236 311 155 19 chr4 161812197 161812358 -22476304 + MIR SINE MIR 47 229 -33 280 299 0 0 chr4 161812644 161812721 -22475941 + ERVL LTR ERVL 2083 2159 -3605 1916 172 36 3 chr4 161813104 161813441 -22475221 + MER7A DNA MER2_type 1 346 0 228 143 0 0 chr4 161813443 161813485 -22475177 + (TA)n Simple_repeat Simple_repeat 1 42 0 605 316 30 13 chr4 161814034 161814265 -22474397 - MIR SINE MIR -27 235 1 658 364 37 7 chr4 161815840 161816274 -22472388 - ERVL LTR ERVL -3241 2523 2077 1673 227 54 34 chr4 161816389 161816741 -22471921 + LTR10D LTR ERV1 1 367 -146 2054 122 10 10 chr4 161816741 161817052 -22471610 + AluSp SINE Alu 1 311 -2 1673 227 54 34 chr4 161817052 161817202 -22471460 + LTR10D LTR ERV1 367 513 0 1823 164 13 0 chr4 161818461 161818766 -22469896 - AluSx SINE Alu -3 309 1 1811 139 27 14 chr4 161819337 161819631 -22469031 + AluSx SINE Alu 1 298 -14 389 228 55 39 chr4 161819639 161819766 -22468896 - L1MD1 LINE L1 -2 6240 6112 183 320 94 23 chr4 161819788 161819916 -22468746 - MIR SINE MIR -106 156 20 313 211 86 0 chr4 161821287 161821378 -22467284 + AluJ/monomer SINE Alu 243 299 -3 240 59 0 0 chr4 161821763 161821797 -22466865 + (CA)n Simple_repeat Simple_repeat 1 34 0 764 226 45 41 chr4 161821831 161822052 -22466610 + MLT1A2 LTR MaLR 153 374 0 232 250 19 0 chr4 161822092 161822144 -22466518 + GA-rich Low_complexity Low_complexity 1 53 0 248 292 77 6 chr4 161822514 161822682 -22465980 + L1M4 LINE L1 2665 2844 -3302 21 0 0 0 chr4 161822780 161822801 -22465861 + AT_rich Low_complexity Low_complexity 1 21 0 551 286 83 27 chr4 161822809 161823145 -22465517 - L1M4 LINE L1 -987 5159 4805 298 359 45 14 chr4 161823172 161823395 -22465267 - MLT1F1-int LTR MaLR -873 498 269 1906 229 73 50 chr4 161823553 161823633 -22465029 - MLT1F1 LTR MaLR -8 559 482 5704 115 15 13 chr4 161823633 161825466 -22463196 + L1PA13 LINE L1 4357 6163 0 1906 229 73 50 chr4 161825466 161825931 -22462731 - MLT1F1 LTR MaLR -85 482 1 252 314 9 19 chr4 161826487 161826592 -22462070 - MIR SINE MIR -4 258 155 180 0 0 0 chr4 161826763 161826783 -22461879 + (TTA)n Simple_repeat Simple_repeat 3 22 0 21 0 0 0 chr4 161878603 161878624 -22410038 + AT_rich Low_complexity Low_complexity 1 21 0 1173 140 16 0 chr4 161878703 161878889 -22409773 + AluY SINE Alu 1 189 -122 239 288 100 12 chr4 161878989 161879159 -22409503 - L1M4 LINE L1 -1531 4615 4431 23 0 0 0 chr4 161879385 161879408 -22409254 + AT_rich Low_complexity Low_complexity 1 23 0 707 103 8 8 chr4 161880101 161880218 -22408444 + AluY SINE Alu 182 298 -13 1373 98 0 14 chr4 161880573 161880788 -22407874 - pTR5 LTR ERV1 -2046 392 181 226 274 51 43 chr4 161881139 161881256 -22407406 + MER5A DNA MER1_type 1 118 -71 419 299 68 41 chr4 161881607 161881828 -22406834 + L1ME LINE L1 5378 5604 -517 191 36 36 0 chr4 161881922 161881950 -22406712 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 190 339 77 0 chr4 161882004 161882069 -22406593 - L2 LINE L2 -43 3270 3201 2292 92 3 0 chr4 161882151 161882446 -22406216 + AluSp SINE Alu 1 296 -17 968 63 0 0 chr4 161882756 161882882 -22405780 - AluSg SINE Alu -184 126 1 2357 208 105 9 chr4 161883173 161883803 -22404859 - Tigger6a DNA MER2_type 0 1083 394 5436 115 15 0 chr4 161883803 161884603 -22404059 - L1PA13 LINE L1 -16 6147 5336 5960 117 18 0 chr4 161884603 161885536 -22403126 + L1PB1 LINE L1 5202 6151 0 568 82 25 21 chr4 161885543 161885690 -22402972 - L1PA13 LINE L1 -798 5348 5110 2619 141 18 0 chr4 161885690 161886131 -22402531 + L1PA13 LINE L1 4646 5094 -1052 1958 221 17 2 chr4 161886140 161886557 -22402105 - Tigger6a DNA MER2_type -660 423 1 21 0 0 0 chr4 161886795 161886816 -22401846 + AT_rich Low_complexity Low_complexity 1 21 0 448 206 0 92 chr4 161886858 161886989 -22401673 - L1 LINE L1 -3451 2931 2813 29 47 0 0 chr4 161887356 161887399 -22401263 + AT_rich Low_complexity Low_complexity 1 43 0 1606 194 54 11 chr4 161889357 161889707 -22398955 + MLT1A1 LTR MaLR 1 365 0 2199 83 0 35 chr4 161889985 161890297 -22398365 - AluSq SINE Alu -12 301 1 1106 248 79 36 chr4 161891723 161891885 -22396777 - L1 LINE L1 -3597 2785 2631 2148 109 0 7 chr4 161891885 161892189 -22396473 - AluSx SINE Alu -10 302 1 1106 248 79 36 chr4 161892189 161892730 -22395932 - L1 LINE L1 -3751 2631 2053 10863 212 30 8 chr4 161892764 161893335 -22395327 + L1M2 LINE L1 2659 3216 -3025 2076 118 0 0 chr4 161893335 161893615 -22395047 + AluSx SINE Alu 17 296 -16 10863 212 30 8 chr4 161893615 161895823 -22392839 + L1M2 LINE L1 3216 5497 -744 21 0 0 0 chr4 161895825 161895846 -22392816 + AT_rich Low_complexity Low_complexity 1 21 0 267 253 200 0 chr4 161896354 161896449 -22392213 + LTR50 LTR ERVL 142 255 -540 534 301 95 46 chr4 161896603 161896952 -22391710 + HAL1 LINE L1 2142 2507 0 2088 319 44 47 chr4 161897176 161897571 -22391091 + HsTC2 DNA Tc2 53 447 -1451 2394 71 0 7 chr4 161897571 161897879 -22390783 + AluY SINE Alu 1 306 -5 2088 319 44 47 chr4 161897879 161898295 -22390367 + HsTC2 DNA Tc2 447 862 -1036 465 341 44 22 chr4 161898429 161898793 -22389869 + L1ME2 LINE L1 3448 3819 -2327 437 301 5 31 chr4 161898805 161899001 -22389661 + L1ME2 LINE L1 3924 4114 -2032 542 280 51 14 chr4 161899045 161899338 -22389324 + L1ME2 LINE L1 4208 4511 -1635 252 0 0 0 chr4 161899429 161899457 -22389205 + (CA)n Simple_repeat Simple_repeat 2 29 0 2093 194 28 34 chr4 161899498 161899967 -22388695 + MLT1C LTR MaLR 2 467 0 647 241 41 31 chr4 161899976 161900266 -22388396 + L1ME2 LINE L1 5651 5943 -221 1161 70 0 13 chr4 161900294 161900452 -22388210 + L1PA8 LINE L1 6011 6166 -6 535 362 37 0 chr4 161900478 161900724 -22387938 + L2 LINE L2 2820 3074 -239 24 32 0 0 chr4 161901052 161901083 -22387579 + AT_rich Low_complexity Low_complexity 1 31 0 183 80 0 0 chr4 161901466 161901491 -22387171 + (TA)n Simple_repeat Simple_repeat 1 25 0 339 25 0 0 chr4 161901761 161901801 -22386861 + (TG)n Simple_repeat Simple_repeat 2 41 0 534 270 53 40 chr4 161901835 161902141 -22386521 + MER93a LTR ERV1 102 424 -10 210 250 0 0 chr4 161902161 161902205 -22386457 + (CATA)n Simple_repeat Simple_repeat 1 44 0 359 247 123 6 chr4 161902401 161902531 -22386131 + MIR SINE MIR 25 169 -39 22 0 0 0 chr4 161902567 161902589 -22386073 + AT_rich Low_complexity Low_complexity 1 22 0 230 322 221 7 chr4 161903527 161903676 -22384986 + L3 LINE CR1 1386 1566 -11 21 0 0 0 chr4 161903680 161903701 -22384961 + AT_rich Low_complexity Low_complexity 1 21 0 1833 40 0 9 chr4 161903824 161904048 -22384614 + AluY SINE Alu 1 222 -89 886 72 0 0 chr4 161904048 161904173 -22384489 + AluY SINE Alu 182 306 -5 366 23 0 0 chr4 161905277 161905320 -22383342 + (TG)n Simple_repeat Simple_repeat 2 44 0 538 190 10 0 chr4 161905817 161905917 -22382745 - MER94 DNA DNA -29 105 5 358 392 15 0 chr4 161905924 161906128 -22382534 - L2 LINE L2 -556 2758 2552 262 197 53 26 chr4 161906896 161906972 -22381690 + LTR33 LTR ERVL 2 79 -442 1097 222 60 4 chr4 161907277 161907525 -22381137 - MLT1C LTR MaLR 0 467 206 195 42 0 0 chr4 161908164 161908188 -22380474 + (A)n Simple_repeat Simple_repeat 1 24 0 1813 187 3 0 chr4 161909556 161909877 -22378785 - L1MB2 LINE L1 -315 5856 5535 223 325 38 0 chr4 161909899 161909979 -22378683 + L2 LINE L2 3230 3312 -1 227 91 0 0 chr4 161911182 161911215 -22377447 - MADE1 DNA Mariner -46 34 2 32 26 0 0 chr4 161911411 161911450 -22377212 + AT_rich Low_complexity Low_complexity 1 39 0 266 273 151 36 chr4 161911644 161911783 -22376879 - L2 LINE L2 0 3313 3159 272 349 86 41 chr4 161912119 161912276 -22376386 - L2 LINE L2 0 3313 3138 571 79 0 0 chr4 161912276 161912352 -22376310 - MADE1 DNA Mariner -1 79 4 272 349 86 41 chr4 161912352 161912463 -22376199 - L2 LINE L2 -175 3138 3033 3248 117 8 2 chr4 161912496 161912626 -22376036 + L1PB1 LINE L1 5653 5781 -370 423 0 0 0 chr4 161912626 161912673 -22375989 + (CA)n Simple_repeat Simple_repeat 2 48 0 3248 117 8 2 chr4 161912673 161913036 -22375626 + L1PB1 LINE L1 5781 6149 -2 739 352 25 12 chr4 161914122 161914443 -22374219 - MLT1I LTR MaLR -38 371 47 2287 60 3 0 chr4 161915320 161915627 -22373035 + AluY SINE Alu 1 308 0 24 77 0 0 chr4 161916691 161916743 -22371919 + AT_rich Low_complexity Low_complexity 1 52 0 264 100 0 0 chr4 161918087 161918127 -22370535 + (CA)n Simple_repeat Simple_repeat 1 40 0 396 0 0 0 chr4 161918369 161918413 -22370249 + (TA)n Simple_repeat Simple_repeat 2 45 0 22 0 0 0 chr4 161918462 161918484 -22370178 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 161918517 161918540 -22370122 + AT_rich Low_complexity Low_complexity 1 23 0 282 347 48 7 chr4 161918554 161918701 -22369961 - MIR3 SINE MIR -5 203 51 201 147 0 0 chr4 161918769 161918803 -22369859 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 21 0 0 0 chr4 161920279 161920300 -22368362 + AT_rich Low_complexity Low_complexity 1 21 0 312 27 0 0 chr4 161921638 161921675 -22366987 + (TTA)n Simple_repeat Simple_repeat 1 37 0 21 0 0 0 chr4 161921769 161921790 -22366872 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr4 161922819 161922853 -22365809 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr4 161923309 161923337 -22365325 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr4 161924032 161924063 -22364599 + AT_rich Low_complexity Low_complexity 1 31 0 183 42 0 0 chr4 161924271 161924295 -22364367 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 21 57 0 0 chr4 161924362 161924397 -22364265 + AT_rich Low_complexity Low_complexity 1 35 0 240 253 0 0 chr4 161924955 161925030 -22363632 + (TA)n Simple_repeat Simple_repeat 2 76 0 344 332 97 23 chr4 161927593 161927852 -22360810 + L2 LINE L2 2176 2453 -861 4237 148 3 0 chr4 161928204 161928893 -22359769 - L1PA16 LINE L1 -7 6159 5469 844 315 104 26 chr4 161929463 161929964 -22358698 - MLT1E LTR MaLR 0 593 54 2081 120 0 3 chr4 161930912 161931203 -22357459 + AluSq SINE Alu 1 290 -23 304 283 11 11 chr4 161931210 161931302 -22357360 - L1MC4 LINE L1 -1339 6703 6612 549 93 70 0 chr4 161931302 161931431 -22357231 + (TA)n Simple_repeat Simple_repeat 1 138 0 472 286 108 37 chr4 161931450 161931691 -22356971 - L2 LINE L2 -4 3309 3052 248 343 29 29 chr4 161934209 161934346 -22354316 - L1MC4 LINE L1 -2167 5641 5505 216 184 0 0 chr4 161935276 161935325 -22353337 + (CATATA)n Simple_repeat Simple_repeat 2 50 0 957 174 4 106 chr4 161935343 161935608 -22353054 - AluJo SINE Alu -7 305 68 30 0 0 0 chr4 161935628 161935658 -22353004 + AT_rich Low_complexity Low_complexity 1 30 0 539 142 28 19 chr4 161935685 161935791 -22352871 - FLAM_C SINE Alu -35 108 2 1913 102 35 7 chr4 161937005 161937288 -22351374 - AluSq SINE Alu -22 291 1 290 260 71 24 chr4 161937811 161937938 -22350724 + L1MC3 LINE L1 7441 7573 -212 1936 135 20 3 chr4 161937939 161938242 -22350420 + AluSx SINE Alu 3 310 -2 233 119 24 0 chr4 161938242 161938284 -22350378 + GA-rich Low_complexity Low_complexity 1 43 0 380 81 0 32 chr4 161938285 161938347 -22350315 + (GGGAA)n Simple_repeat Simple_repeat 5 64 0 821 179 10 65 chr4 161938448 161938649 -22350013 + L1MC3 LINE L1 7583 7772 -13 264 158 0 0 chr4 161938822 161938879 -22349783 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 545 300 89 69 chr4 161939293 161939686 -22348976 + MLT1I LTR MaLR 3 403 -6 343 244 40 34 chr4 161939923 161940099 -22348563 + (TATATG)n Simple_repeat Simple_repeat 3 179 0 378 42 0 0 chr4 161941259 161941307 -22347355 + (TG)n Simple_repeat Simple_repeat 2 49 0 288 0 0 0 chr4 161941343 161941375 -22347287 + (TG)n Simple_repeat Simple_repeat 2 33 0 245 175 35 0 chr4 161941719 161941776 -22346886 + (TTAAA)n Simple_repeat Simple_repeat 4 62 0 420 314 117 16 chr4 161942128 161942316 -22346346 - MIR SINE MIR -12 250 44 2291 304 47 55 chr4 161942389 161942940 -22345722 + L2 LINE L2 1559 2113 -1201 598 253 177 0 chr4 161942940 161943126 -22345536 - MER20 DNA MER1_type 0 219 1 2291 304 47 55 chr4 161943126 161943462 -22345200 + L2 LINE L2 2113 2450 -864 1827 177 42 65 chr4 161943462 161943678 -22344984 - MSTB LTR MaLR 0 426 223 2662 29 3 0 chr4 161943678 161943986 -22344676 + AluY SINE Alu 1 309 -2 1827 177 42 65 chr4 161943986 161944203 -22344459 - MSTB LTR MaLR -203 223 3 2291 304 47 55 chr4 161944203 161944607 -22344055 + L2 LINE L2 2450 2841 -473 905 298 65 41 chr4 161944631 161945168 -22343494 - L1ME3A LINE L1 -333 5837 5288 458 369 73 24 chr4 161945205 161945793 -22342869 - L1ME3A LINE L1 -925 5221 4605 785 231 24 24 chr4 161945793 161946005 -22342657 + L1PB4 LINE L1 5945 6156 0 341 274 101 65 chr4 161946030 161946757 -22341905 - L1ME3A LINE L1 -1526 4620 3852 417 213 118 7 chr4 161948176 161948312 -22340350 - MER103 DNA DNA -9 157 7 23 78 0 0 chr4 161948877 161948928 -22339734 + AT_rich Low_complexity Low_complexity 1 51 0 391 252 36 18 chr4 161949305 161949416 -22339246 - L2 LINE L2 -2 3311 3199 250 293 76 38 chr4 161949599 161949756 -22338906 + L1ME4a LINE L1 5955 6117 -4 28 29 0 0 chr4 161949802 161949837 -22338825 + AT_rich Low_complexity Low_complexity 1 35 0 191 301 158 41 chr4 161950958 161951104 -22337558 - MIR3 SINE MIR 0 208 46 214 260 0 0 chr4 161951410 161951460 -22337202 - L2 LINE L2 0 3313 3264 218 345 36 0 chr4 161951670 161951780 -22336882 + MIR3 SINE MIR 10 123 -85 1703 49 0 31 chr4 161951925 161952149 -22336513 + AluY SINE Alu 82 298 -13 1598 52 0 5 chr4 161952504 161952717 -22335945 - pTR5 LTR ERV1 -2046 392 181 320 376 17 6 chr4 161953065 161953246 -22335416 + MER5A DNA MER1_type 1 183 -6 21 0 0 0 chr4 161953670 161953691 -22334971 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 161954177 161954206 -22334456 + AT_rich Low_complexity Low_complexity 1 29 0 214 245 0 20 chr4 161954311 161954360 -22334302 + MIR SINE MIR 83 130 -78 297 294 89 0 chr4 161955142 161955288 -22333374 + L1M4 LINE L1 4693 4851 -1295 21 89 0 0 chr4 161955410 161955466 -22333196 + AT_rich Low_complexity Low_complexity 1 56 0 35 71 0 0 chr4 161955536 161955606 -22333056 + AT_rich Low_complexity Low_complexity 1 70 0 2330 72 0 13 chr4 161955777 161956084 -22332578 + AluY SINE Alu 1 303 -8 2381 165 9 23 chr4 161958612 161959048 -22329614 - Tigger2a DNA MER2_type -1 433 4 340 258 0 15 chr4 161959581 161959713 -22328949 + (TA)n Simple_repeat Simple_repeat 1 130 0 259 316 41 0 chr4 161960218 161960316 -22328346 + MIR3 SINE MIR 105 206 -2 1647 140 18 30 chr4 161960912 161961247 -22327415 + L1MA5A LINE L1 5961 6291 -6 1202 194 0 57 chr4 161961536 161961799 -22326863 - AluJo SINE Alu -17 295 48 2228 43 7 4 chr4 161962234 161962511 -22326151 + AluY SINE Alu 16 293 -18 294 355 112 0 chr4 161962929 161963098 -22325564 - L2 LINE L2 -1 3312 3125 547 307 110 11 chr4 161963205 161963469 -22325193 + L2 LINE L2 2125 2414 -900 536 264 108 29 chr4 161964328 161964605 -22324057 + LTR43 LTR ERV1 180 478 -124 351 0 0 0 chr4 161966212 161966251 -22322411 + (TG)n Simple_repeat Simple_repeat 2 40 0 215 200 0 18 chr4 161966261 161966316 -22322346 + GA-rich Low_complexity Low_complexity 2 55 0 529 356 124 28 chr4 161967039 161967547 -22321115 - L2 LINE L2 -337 2977 2421 192 40 0 0 chr4 161967891 161967916 -22320746 + (CAA)n Simple_repeat Simple_repeat 2 26 0 369 0 0 0 chr4 161967965 161968006 -22320656 + (TG)n Simple_repeat Simple_repeat 1 41 0 982 235 129 12 chr4 161968238 161968493 -22320169 + AluJb SINE Alu 3 287 -15 21 0 0 0 chr4 161969000 161969021 -22319641 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr4 161970067 161970108 -22318554 + AT_rich Low_complexity Low_complexity 1 41 0 559 283 62 0 chr4 161970405 161970582 -22318080 - MIR SINE MIR -3 259 72 205 299 91 0 chr4 161971580 161971657 -22317005 + L2 LINE L2 115 198 -3116 282 300 184 37 chr4 161971737 161971927 -22316735 + L2 LINE L2 3094 3311 -2 27 87 0 0 chr4 161971976 161972045 -22316617 + AT_rich Low_complexity Low_complexity 1 69 0 27 0 0 0 chr4 161972076 161972103 -22316559 + AT_rich Low_complexity Low_complexity 1 27 0 325 293 36 21 chr4 161972800 161972940 -22315722 - MIR SINE MIR -48 214 73 322 384 44 15 chr4 161973381 161973587 -22315075 - MIR SINE MIR -10 252 41 291 303 33 100 chr4 161973685 161974045 -22314617 + MLT1I LTR MaLR 62 397 -12 195 362 0 14 chr4 161974054 161974123 -22314539 - MIR3 SINE MIR -136 72 5 29 60 0 0 chr4 161975142 161975192 -22313470 + AT_rich Low_complexity Low_complexity 1 50 0 1294 124 73 48 chr4 161975434 161975707 -22312955 + L1MA9 LINE L1 6028 6307 -5 1054 249 80 34 chr4 161975967 161976292 -22312370 - LTR40b LTR ERVL 0 462 123 5613 71 12 0 chr4 161976317 161977046 -22311616 - LTR17 LTR ERV1 -10 770 33 945 235 11 70 chr4 161977047 161977319 -22311343 - LTR40a LTR ERVL -263 256 1 290 162 14 0 chr4 161977992 161978066 -22310596 + (TA)n Simple_repeat Simple_repeat 1 75 0 42 20 0 0 chr4 161978166 161978215 -22310447 + AT_rich Low_complexity Low_complexity 1 49 0 241 318 28 37 chr4 161979194 161979301 -22309361 - MIR SINE MIR -70 138 33 234 269 0 0 chr4 161979384 161979436 -22309226 - L2 LINE L2 0 3313 3262 1656 173 39 9 chr4 161979937 161980272 -22308390 - L1MC1 LINE L1 -5 6328 5984 514 115 0 0 chr4 161980273 161980351 -22308311 - L1MC1 LINE L1 -405 5928 5851 1224 68 0 0 chr4 161980351 161980499 -22308163 - AluY SINE Alu -163 148 1 3216 176 23 13 chr4 161980499 161981308 -22307354 - L1MC1 LINE L1 -479 5854 5039 1026 167 29 0 chr4 161981556 161981760 -22306902 + L1MA4 LINE L1 6087 6296 -4 1476 247 12 29 chr4 161981779 161982265 -22306397 - L1MC1 LINE L1 -1089 5057 4580 2016 249 40 50 chr4 161982290 161983190 -22305472 - L1ME2 LINE L1 -17 6147 5257 221 276 17 0 chr4 161983411 161983469 -22305193 + (CATATA)n Simple_repeat Simple_repeat 4 62 0 30 59 0 0 chr4 161984346 161984397 -22304265 + AT_rich Low_complexity Low_complexity 1 51 0 245 365 64 19 chr4 161984675 161984831 -22303831 - MIR3 SINE MIR -7 201 39 441 179 187 0 chr4 161985348 161985471 -22303191 - MER103 DNA DNA -18 148 3 834 273 84 68 chr4 161985895 161986443 -22302219 - L1ME3 LINE L1 -6 6156 5596 1636 114 4 4 chr4 161986443 161986671 -22301991 - AluSc SINE Alu -81 228 1 834 273 84 68 chr4 161986671 161986715 -22301947 - L1ME3 LINE L1 -566 5596 5554 21 0 0 0 chr4 161986750 161986771 -22301891 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 161987165 161987186 -22301476 + AT_rich Low_complexity Low_complexity 1 21 0 2236 104 3 0 chr4 161987802 161988109 -22300553 - AluSg SINE Alu -2 308 1 382 309 29 11 chr4 161988500 161988675 -22299987 + MER5B DNA MER1_type 1 178 0 208 221 76 0 chr4 161988764 161988922 -22299740 + (TA)n Simple_repeat Simple_repeat 1 170 0 203 356 123 20 chr4 161989545 161989691 -22298971 - L2 LINE L2 -162 3110 2950 2451 169 28 43 chr4 161989930 161989968 -22298694 - L1P4 LINE L1 -702 5459 5422 1854 129 7 0 chr4 161989968 161990239 -22298423 - AluSx SINE Alu -39 273 1 2451 169 28 43 chr4 161990239 161990827 -22297835 - L1P4 LINE L1 -739 5422 4848 23 33 0 0 chr4 161990827 161990857 -22297805 + AT_rich Low_complexity Low_complexity 1 30 0 2244 110 7 0 chr4 161991115 161991425 -22297237 - AluSx SINE Alu 0 312 1 333 208 57 75 chr4 161991447 161991498 -22297164 + MER5A DNA MER1_type 1 51 -138 1481 205 66 24 chr4 161991498 161991878 -22296784 - MSTD LTR MaLR 0 396 1 333 208 57 75 chr4 161991878 161991932 -22296730 + MER5A DNA MER1_type 51 104 -85 28 0 0 0 chr4 161992537 161992565 -22296097 + AT_rich Low_complexity Low_complexity 1 28 0 243 295 21 11 chr4 161994398 161994493 -22294169 + GA-rich Low_complexity Low_complexity 4 99 0 21 0 0 0 chr4 161994659 161994680 -22293982 + AT_rich Low_complexity Low_complexity 1 21 0 190 382 27 38 chr4 161994899 161995085 -22293577 - MIR3 SINE MIR -5 203 20 32 57 0 0 chr4 161995295 161995348 -22293314 + AT_rich Low_complexity Low_complexity 1 53 0 3499 77 0 0 chr4 161995854 161996311 -22292351 - L1PA7 LINE L1 -12 6142 5686 32 26 0 0 chr4 161996656 161996695 -22291967 + AT_rich Low_complexity Low_complexity 1 39 0 377 263 112 40 chr4 161996892 161997116 -22291546 - L1M4 LINE L1 -1578 4568 4329 275 355 11 0 chr4 161998095 161998188 -22290474 - MER102a DNA MER1_type -1 329 236 234 295 0 0 chr4 161998492 161998570 -22290092 + L1M4 LINE L1 3374 3451 -2695 238 289 67 0 chr4 161998714 161998818 -22289844 - MER102a DNA MER1_type -177 153 43 234 0 0 0 chr4 161998958 161998984 -22289678 + (GA)n Simple_repeat Simple_repeat 1 26 0 26 30 0 0 chr4 161999281 161999314 -22289348 + AT_rich Low_complexity Low_complexity 1 33 0 1125 329 68 29 chr4 162002018 162002751 -22285911 - ERVL LTR ERVL -740 5024 4263 1318 217 92 24 chr4 162003373 162003742 -22284920 + MSTD LTR MaLR 1 394 -2 804 263 20 66 chr4 162004231 162004532 -22284130 - LTR40a LTR ERVL -232 287 1 598 291 51 15 chr4 162004726 162004922 -22283740 - LTR16A LTR ERVL -9 441 239 705 230 91 43 chr4 162005000 162005209 -22283453 + LTR40b LTR ERVL 233 451 -11 258 236 64 73 chr4 162005413 162005523 -22283139 - MLT2E LTR ERVL -476 152 44 1379 146 23 39 chr4 162005763 162006023 -22282639 + Tigger5 DNA MER2_type 2067 2322 -1 787 111 0 0 chr4 162006023 162006140 -22282522 + L1MA8 LINE L1 6168 6284 -7 378 355 89 15 chr4 162006558 162006761 -22281901 + L3 LINE CR1 180 397 -1180 201 225 0 0 chr4 162007497 162007537 -22281125 + (CA)n Simple_repeat Simple_repeat 1 40 0 884 227 43 92 chr4 162007625 162008083 -22280579 - MLT2D LTR ERVL -40 480 1 3170 215 16 21 chr4 162008832 162010112 -22278550 - L1 LINE L1 -3213 3635 2363 5015 189 37 13 chr4 162010113 162011527 -22277135 + L1MA5 LINE L1 4840 6298 -2 8721 131 10 3 chr4 162011618 162013258 -22275404 - L1P4 LINE L1 -524 5607 3954 1040 73 0 0 chr4 162013256 162013392 -22275270 + L1P4 LINE L1 5618 5753 -415 * 1471 161 7 64 chr4 162013425 162013743 -22274919 + AluJb SINE Alu 1 301 0 4698 60 7 2 chr4 162013747 162014359 -22274303 + L1PA8 LINE L1 5554 6168 -4 809 114 8 0 chr4 162014370 162014502 -22274160 + (GAA)n Simple_repeat Simple_repeat 1 133 0 327 200 33 0 chr4 162014503 162014593 -22274069 + L1MA9 LINE L1 5308 5400 -2595 * 708 263 58 27 chr4 162014578 162014954 -22273708 + L1MEc LINE L1 2133 2520 -3876 2224 197 53 27 chr4 162014965 162015918 -22272744 - L1M2 LINE L1 -568 5744 4752 524 178 34 8 chr4 162015923 162016041 -22272621 + L1MA9 LINE L1 5961 6081 -231 716 279 100 50 chr4 162016052 162016452 -22272210 - MLT2B1 LTR ERVL -54 466 1 23 33 0 0 chr4 162017967 162017997 -22270665 + AT_rich Low_complexity Low_complexity 1 30 0 38 0 0 0 chr4 162018116 162018154 -22270508 + AT_rich Low_complexity Low_complexity 1 38 0 26 74 0 0 chr4 162018623 162018677 -22269985 + AT_rich Low_complexity Low_complexity 1 54 0 742 274 17 6 chr4 162019020 162019195 -22269467 + MER45A DNA AcHobo 2 178 0 362 193 23 11 chr4 162019576 162019664 -22268998 - MLT1C LTR MaLR -378 89 1 23 0 0 0 chr4 162019973 162019996 -22268666 + AT_rich Low_complexity Low_complexity 1 23 0 26 50 0 0 chr4 162020265 162020305 -22268357 + AT_rich Low_complexity Low_complexity 1 40 0 274 288 41 0 chr4 162020800 162020873 -22267789 + MER5A DNA MER1_type 108 183 -6 2334 92 0 7 chr4 162022050 162022354 -22266308 + AluSx SINE Alu 2 303 -9 2069 130 0 0 chr4 162022805 162023114 -22265548 - AluSx SINE Alu 0 311 3 21 57 0 0 chr4 162024051 162024086 -22264576 + AT_rich Low_complexity Low_complexity 1 35 0 228 204 0 0 chr4 162024289 162024333 -22264329 - L1ME LINE L1 -457 6107 6064 370 292 108 21 chr4 162024530 162024958 -22263704 - L1ME LINE L1 -820 5720 5256 438 67 40 0 chr4 162025209 162025284 -22263378 + (TCTA)n Simple_repeat Simple_repeat 4 81 0 2880 196 31 21 chr4 162025550 162026222 -22262440 - MER67C LTR ERV1 -31 679 1 332 158 0 0 chr4 162026618 162026675 -22261987 - L1MA8 LINE L1 -191 6100 6044 23 33 0 0 chr4 162026932 162026962 -22261700 + AT_rich Low_complexity Low_complexity 1 30 0 481 345 76 14 chr4 162027054 162027408 -22261254 + L1MEd LINE L1 465 840 -5279 538 335 92 59 chr4 162027482 162028250 -22260412 + L1M4 LINE L1 3370 4163 -1983 818 289 104 73 chr4 162029081 162030503 -22258159 - L1MEd LINE L1 -2687 3853 2397 43 0 0 0 chr4 162030799 162030842 -22257820 + AT_rich Low_complexity Low_complexity 1 43 0 28 79 0 0 chr4 162030917 162030980 -22257682 + AT_rich Low_complexity Low_complexity 1 63 0 333 278 106 89 chr4 162031149 162031585 -22257077 - L1MEd LINE L1 -1165 1736 1228 225 340 0 21 chr4 162032323 162032420 -22256242 - L1MEd LINE L1 -5763 767 673 285 29 0 0 chr4 162032705 162032739 -22255923 + (TG)n Simple_repeat Simple_repeat 2 35 0 1894 142 0 22 chr4 162032971 162033287 -22255375 - AluSx SINE Alu -3 309 1 2113 112 17 0 chr4 162033487 162033783 -22254879 - AluSq SINE Alu -11 302 2 205 401 42 53 chr4 162034914 162035178 -22253484 + L2 LINE L2 2976 3236 -36 25 0 0 0 chr4 162035506 162035531 -22253131 + AT_rich Low_complexity Low_complexity 1 25 0 14222 152 14 17 chr4 162035570 162035810 -22252852 + Tigger1 DNA MER2_type 1 240 -2178 433 106 11 53 chr4 162035810 162035904 -22252758 - L1MA4A LINE L1 -4 6299 6210 14222 152 14 17 chr4 162035904 162038087 -22250575 + Tigger1 DNA MER2_type 240 2418 0 2439 28 0 0 chr4 162038347 162038633 -22250029 - L1PA2 LINE L1 -66 6089 5804 2131 120 3 0 chr4 162039221 162039522 -22249140 - AluSp SINE Alu -11 302 1 207 0 0 0 chr4 162040165 162040188 -22248474 + (T)n Simple_repeat Simple_repeat 1 23 0 376 304 165 21 chr4 162040412 162040655 -22248007 - L2 LINE L2 -27 3286 3009 223 244 0 0 chr4 162040911 162040956 -22247706 + (TG)n Simple_repeat Simple_repeat 1 45 0 26 30 0 0 chr4 162041350 162041383 -22247279 + AT_rich Low_complexity Low_complexity 1 33 0 278 328 109 77 chr4 162043869 162044975 -22243687 + L2 LINE L2 1211 2352 -962 1006 290 108 16 chr4 162045011 162045445 -22243217 - L2 LINE L2 -837 2477 2004 981 324 106 19 chr4 162045458 162046019 -22242643 + L2 LINE L2 2420 3030 -283 394 248 9 29 chr4 162046115 162046220 -22242442 + L2 LINE L2 3202 3304 -9 243 114 0 0 chr4 162046222 162046266 -22242396 + (TGAA)n Simple_repeat Simple_repeat 3 46 0 1680 187 0 11 chr4 162047299 162047583 -22241079 + AluJb SINE Alu 11 291 -21 2065 108 0 10 chr4 162049439 162049735 -22238927 - AluSc SINE Alu -16 293 1 21 57 0 0 chr4 162050648 162050683 -22237979 + AT_rich Low_complexity Low_complexity 1 35 0 193 343 0 15 chr4 162051027 162051094 -22237568 - MIR SINE MIR -19 243 178 1589 143 78 34 chr4 162051173 162051298 -22237364 + AluSx SINE Alu 3 121 -191 183 42 0 0 chr4 162051298 162051322 -22237340 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1589 143 78 34 chr4 162051322 162051489 -22237173 + AluSx SINE Alu 121 308 -4 285 29 0 0 chr4 162052190 162052224 -22236438 + (CA)n Simple_repeat Simple_repeat 2 35 0 204 40 0 0 chr4 162052223 162052248 -22236414 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 195 42 0 0 chr4 162052792 162052816 -22235846 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1981 132 0 0 chr4 162052816 162053096 -22235566 - AluSx SINE Alu -32 280 1 21 57 0 0 chr4 162053484 162053519 -22235143 + AT_rich Low_complexity Low_complexity 1 35 0 2110 116 3 0 chr4 162054796 162055090 -22233572 + AluSq SINE Alu 15 309 -4 26 88 0 0 chr4 162055454 162055522 -22233140 + AT_rich Low_complexity Low_complexity 1 68 0 1183 198 68 27 chr4 162056447 162056739 -22231923 + AluJo SINE Alu 9 311 0 286 333 61 0 chr4 162058066 162058180 -22230482 - L2 LINE L2 -2 3311 3191 1338 220 7 23 chr4 162058306 162058611 -22230051 - L1PB4 LINE L1 -9 6147 5848 23 33 0 0 chr4 162058930 162058960 -22229702 + AT_rich Low_complexity Low_complexity 1 30 0 1758 145 40 57 chr4 162059139 162059279 -22229383 - L1PB4 LINE L1 0 6156 6015 2106 120 3 3 chr4 162059279 162059579 -22229083 - AluSg SINE Alu -10 300 1 1758 145 40 57 chr4 162059579 162059810 -22228852 - L1PB4 LINE L1 -141 6015 5791 216 327 139 12 chr4 162059872 162060037 -22228625 - MIR SINE MIR -6 256 71 411 340 33 28 chr4 162060728 162060943 -22227719 + MIR SINE MIR 37 252 -10 21 0 0 0 chr4 162060946 162060967 -22227695 + AT_rich Low_complexity Low_complexity 1 21 0 186 103 0 0 chr4 162061423 162061452 -22227210 + (TA)n Simple_repeat Simple_repeat 1 29 0 230 196 18 0 chr4 162061493 162061549 -22227113 + (TA)n Simple_repeat Simple_repeat 1 57 0 258 32 0 0 chr4 162061588 162061619 -22227043 + (CA)n Simple_repeat Simple_repeat 2 32 0 264 59 0 0 chr4 162061619 162061653 -22227009 + (GA)n Simple_repeat Simple_repeat 1 34 0 358 322 88 19 chr4 162063246 162063451 -22225211 - MER115 DNA AcHobo -446 247 29 1891 142 10 7 chr4 162068545 162068841 -22219821 - AluSx SINE Alu -15 297 1 2249 105 0 10 chr4 162069946 162070252 -22218410 + AluSq SINE Alu 1 303 -10 2252 222 47 20 chr4 162070723 162071296 -22217366 + L1MB7 LINE L1 5584 6163 -21 21 0 0 0 chr4 162072759 162072780 -22215882 + AT_rich Low_complexity Low_complexity 1 21 0 502 281 86 29 chr4 162073721 162074034 -22214628 - L1ME3A LINE L1 -106 6058 5743 21 0 0 0 chr4 162075625 162075646 -22213016 + AT_rich Low_complexity Low_complexity 1 21 0 289 315 128 13 chr4 162075883 162076032 -22212630 + MIR SINE MIR 66 231 -31 254 350 47 56 chr4 162076443 162076657 -22212005 - L2 LINE L2 -195 3077 2866 526 345 114 45 chr4 162076872 162077321 -22211341 - L2 LINE L2 -10 3303 2824 391 326 138 20 chr4 162077325 162077629 -22211033 - L2 LINE L2 -713 2601 2262 191 122 0 24 chr4 162078203 162078244 -22210418 + (TTTC)n Simple_repeat Simple_repeat 4 43 0 272 274 137 16 chr4 162078375 162078499 -22210163 + MIR SINE MIR 113 251 -11 2266 88 0 0 chr4 162078586 162078880 -22209782 - AluY SINE Alu -17 294 1 261 0 0 0 chr4 162080115 162080144 -22208518 + (CA)n Simple_repeat Simple_repeat 2 30 0 229 382 33 17 chr4 162080164 162080355 -22208307 - MIR SINE MIR -50 212 20 282 95 0 0 chr4 162080404 162080446 -22208216 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 196 369 78 0 chr4 162080458 162080561 -22208101 + MIR SINE MIR 123 233 -29 209 195 24 0 chr4 162080832 162080873 -22207789 + CT-rich Low_complexity Low_complexity 3 44 0 2221 91 0 23 chr4 162081126 162081434 -22207228 - AluSx SINE Alu -11 301 1 21 57 0 0 chr4 162081436 162081471 -22207191 + AT_rich Low_complexity Low_complexity 1 35 0 1447 114 20 35 chr4 162082595 162082849 -22205813 + MER4D LTR ERV1 3 252 -620 383 0 21 0 chr4 162082849 162082896 -22205766 + (TG)n Simple_repeat Simple_repeat 2 49 0 1769 216 58 22 chr4 162083097 162083593 -22205069 - MER67D LTR ERV1 0 514 1 2506 53 0 0 chr4 162083839 162084141 -22204521 + AluY SINE Alu 1 302 -9 435 319 44 6 chr4 162085489 162085649 -22203013 + MIR SINE MIR 33 198 -64 22 0 0 0 chr4 162086041 162086063 -22202599 + AT_rich Low_complexity Low_complexity 1 22 0 411 350 80 15 chr4 162086317 162086517 -22202145 + MIR SINE MIR 23 235 -27 5955 98 23 0 chr4 162086626 162087848 -22200814 + L1PA14 LINE L1 4921 6159 -2 302 176 14 0 chr4 162088168 162088242 -22200420 + L1MA7 LINE L1 6214 6288 -3 23 78 0 0 chr4 162088571 162088622 -22200040 + AT_rich Low_complexity Low_complexity 1 51 0 774 117 0 0 chr4 162088761 162088881 -22199781 + (TA)n Simple_repeat Simple_repeat 2 121 0 2070 116 0 13 chr4 162088881 162089182 -22199480 - AluSp SINE Alu -16 297 1 1248 296 97 25 chr4 162089186 162089973 -22198689 + L2 LINE L2 2308 3155 -158 1245 222 0 0 chr4 162089975 162090196 -22198466 + MER8 DNA MER2_type 1 221 -18 25 90 0 0 chr4 162091288 162091355 -22197307 + AT_rich Low_complexity Low_complexity 1 67 0 245 178 311 0 chr4 162091731 162091821 -22196841 - L1MA10 LINE L1 -7 6327 6210 584 276 59 44 chr4 162091842 162092183 -22196479 - L1ME1 LINE L1 -3 6163 5818 26 0 0 0 chr4 162092350 162092376 -22196286 + AT_rich Low_complexity Low_complexity 1 26 0 324 289 0 12 chr4 162093769 162093852 -22194810 + MIR3 SINE MIR 96 177 -31 329 197 45 8 chr4 162094078 162094210 -22194452 + (TA)n Simple_repeat Simple_repeat 1 137 0 297 75 0 0 chr4 162094245 162094285 -22194377 + (TA)n Simple_repeat Simple_repeat 1 40 0 2079 133 0 7 chr4 162095174 162095476 -22193186 - AluSx SINE Alu -12 300 1 27 29 0 0 chr4 162095476 162095510 -22193152 + AT_rich Low_complexity Low_complexity 1 34 0 29 0 0 0 chr4 162095979 162096008 -22192654 + AT_rich Low_complexity Low_complexity 1 29 0 233 250 30 10 chr4 162096043 162096143 -22192519 + (TATATG)n Simple_repeat Simple_repeat 2 103 0 1373 142 0 0 chr4 162096587 162096784 -22191878 + AluSg/x SINE Alu 101 297 -15 376 315 25 2 chr4 162096819 162096946 -22191716 - MER5B DNA MER1_type -49 140 1 398 206 0 33 chr4 162097090 162097182 -22191480 + FLAM_A SINE Alu 34 122 -11 2162 89 58 0 chr4 162100684 162100977 -22187685 + AluSx SINE Alu 1 310 -2 758 125 31 20 chr4 162101439 162101699 -22186963 + CT-rich Low_complexity Low_complexity 1 263 0 23 0 0 0 chr4 162101705 162101728 -22186934 + AT_rich Low_complexity Low_complexity 1 23 0 519 350 128 2 chr4 162101777 162102200 -22186462 + L1MC4a LINE L1 6552 7027 -781 260 247 37 12 chr4 162102582 162102663 -22185999 - MLT1H LTR MaLR -379 170 88 616 281 48 24 chr4 162102764 162103013 -22185649 + L1MC4a LINE L1 7228 7482 -326 438 216 45 37 chr4 162103079 162103213 -22185449 + L1MC4 LINE L1 7752 7886 -156 228 35 0 0 chr4 162103386 162103415 -22185247 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2437 64 0 3 chr4 162104073 162104411 -22184251 - AluY SINE Alu 0 337 1 327 247 0 0 chr4 162104423 162104512 -22184150 - L1MB2 LINE L1 -1 6170 6082 2282 60 0 0 chr4 162104961 162105243 -22183419 + AluY SINE Alu 1 282 -29 360 247 0 13 chr4 162105268 162105345 -22183317 - MER5B DNA MER1_type -14 164 89 2438 56 0 10 chr4 162105602 162105908 -22182754 - AluY SINE Alu -8 303 1 466 53 0 26 chr4 162105923 162105999 -22182663 + (TTTTA)n Simple_repeat Simple_repeat 1 74 0 9787 23 3 0 chr4 162105999 162107911 -22180751 - L1PA2 LINE L1 -24 6131 4213 204 211 27 197 chr4 162108128 162108275 -22180387 - MIR SINE MIR -28 234 113 225 347 100 6 chr4 162108284 162108454 -22180208 - L3 LINE CR1 -801 776 591 208 258 108 42 chr4 162108655 162108775 -22179887 - L2 LINE L2 -457 2857 2730 1336 268 76 64 chr4 162108921 162109373 -22179289 - MLT1E LTR MaLR -8 585 123 1753 110 81 4 chr4 162109373 162109645 -22179017 + AluSq SINE Alu 6 298 -15 1336 268 76 64 chr4 162109645 162109770 -22178892 - MLT1E LTR MaLR -470 123 1 477 84 0 0 chr4 162112751 162112822 -22175840 + (TG)n Simple_repeat Simple_repeat 2 72 0 390 351 82 29 chr4 162112835 162113151 -22175511 + L3 LINE CR1 1232 1564 -13 265 380 15 7 chr4 162113572 162113709 -22174953 - MIR SINE MIR -122 140 3 21 0 0 0 chr4 162113960 162113981 -22174681 + AT_rich Low_complexity Low_complexity 1 21 0 325 283 0 0 chr4 162114264 162114377 -22174285 + T-rich Low_complexity Low_complexity 1 113 0 1439 178 39 105 chr4 162114918 162115328 -22173334 - MLT1B LTR MaLR -7 383 1 27 0 0 0 chr4 162118452 162118479 -22170183 + AT_rich Low_complexity Low_complexity 1 27 0 295 262 49 0 chr4 162118720 162118781 -22169881 - MIR SINE MIR -176 86 23 27 49 0 0 chr4 162119654 162119695 -22168967 + AT_rich Low_complexity Low_complexity 1 41 0 255 133 0 0 chr4 162120173 162120218 -22168444 + (TA)n Simple_repeat Simple_repeat 1 45 0 985 243 30 27 chr4 162120335 162120631 -22168031 + AluJo SINE Alu 3 299 -3 27 81 0 0 chr4 162120676 162120738 -22167924 + AT_rich Low_complexity Low_complexity 1 62 0 2172 107 0 50 chr4 162121262 162121581 -22167081 + AluSq SINE Alu 1 303 -10 29 0 0 0 chr4 162122138 162122167 -22166495 + AT_rich Low_complexity Low_complexity 1 29 0 2815 263 50 68 chr4 162122567 162123826 -22164836 + L1MEc LINE L1 63 1565 -4581 280 176 35 3 chr4 162123958 162124031 -22164631 + L1MA10 LINE L1 6102 6323 -2 21 0 0 0 chr4 162124649 162124670 -22163992 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 162124900 162124922 -22163740 + AT_rich Low_complexity Low_complexity 1 22 0 275 103 0 0 chr4 162125139 162125178 -22163484 + MADE1 DNA Mariner 1 39 -41 210 150 0 0 chr4 162127137 162127177 -22161485 + (CATA)n Simple_repeat Simple_repeat 2 41 0 22 35 0 0 chr4 162128093 162128122 -22160540 + AT_rich Low_complexity Low_complexity 1 29 0 33 56 0 0 chr4 162128368 162128422 -22160240 + AT_rich Low_complexity Low_complexity 1 54 0 21 0 0 0 chr4 162130080 162130101 -22158561 + AT_rich Low_complexity Low_complexity 1 21 0 293 327 42 38 chr4 162130170 162130433 -22158229 + L1ME2 LINE L1 22 285 -6138 2695 88 6 3 chr4 162130450 162130813 -22157849 - THE1B LTR MaLR 0 364 1 237 108 0 0 chr4 162130815 162130852 -22157810 + (TAA)n Simple_repeat Simple_repeat 1 37 0 399 308 85 27 chr4 162131730 162132363 -22156299 + L1ME2 LINE L1 1321 2005 -4936 2128 193 89 17 chr4 162132363 162132834 -22155828 + MLT1D LTR MaLR 1 505 0 399 308 85 27 chr4 162132834 162132944 -22155718 + L1ME2 LINE L1 2005 2107 -4834 1488 122 0 0 chr4 162132996 162133201 -22155461 + AluSq SINE Alu 1 205 -108 417 121 0 0 chr4 162133201 162133267 -22155395 + AluSq SINE Alu 244 309 -2 21 36 0 0 chr4 162133370 162133398 -22155264 + AT_rich Low_complexity Low_complexity 1 28 0 1663 203 0 19 chr4 162133433 162133748 -22154914 - AluJo SINE Alu -2 310 2 1472 267 78 32 chr4 162133857 162134581 -22154081 + L1ME2 LINE L1 5284 5973 -1000 276 30 0 0 chr4 162134581 162134614 -22154048 + (CA)n Simple_repeat Simple_repeat 1 33 0 1472 267 78 32 chr4 162134614 162135242 -22153420 + L1ME2 LINE L1 5973 6711 -262 25 0 0 0 chr4 162135772 162135797 -22152865 + AT_rich Low_complexity Low_complexity 1 25 0 354 210 32 6 chr4 162135825 162135978 -22152684 - L1MA4A LINE L1 -23 6280 6058 2121 130 0 0 chr4 162135979 162136272 -22152390 - AluSg SINE Alu -17 293 1 28 48 0 0 chr4 162136784 162136826 -22151836 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr4 162136855 162136880 -22151782 + AT_rich Low_complexity Low_complexity 1 25 0 40 73 0 0 chr4 162137331 162137413 -22151249 + AT_rich Low_complexity Low_complexity 1 82 0 2453 74 7 0 chr4 162137889 162138198 -22150464 + AluY SINE Alu 1 311 0 1483 258 22 16 chr4 162138488 162138977 -22149685 - L1M4 LINE L1 -1575 5069 4578 608 254 93 12 chr4 162139013 162139261 -22149401 - L1M4 LINE L1 -2414 4230 3963 2853 256 93 15 chr4 162139265 162140900 -22147762 - L1M4 LINE L1 -2806 3838 1955 216 0 0 0 chr4 162140900 162140924 -22147738 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2853 256 93 15 chr4 162140924 162141604 -22147058 - L1M4 LINE L1 -4689 1955 1330 285 329 58 24 chr4 162141701 162141908 -22146754 - L1M4 LINE L1 -6278 264 51 22 99 0 0 chr4 162143346 162143417 -22145245 + AT_rich Low_complexity Low_complexity 1 71 0 263 301 55 60 chr4 162143424 162143607 -22145055 - L2 LINE L2 -15 3298 3117 1038 285 131 28 chr4 162144099 162145397 -22143265 - HAL1 LINE L1 -939 1568 16 1408 145 17 8 chr4 162145610 162145845 -22142817 - AluSx SINE Alu -75 237 1 550 298 91 58 chr4 162146981 162147223 -22141439 - MIR SINE MIR -1 261 12 321 312 147 24 chr4 162147527 162147697 -22140965 + MIR SINE MIR 2 192 -70 26 0 0 0 chr4 162148895 162148921 -22139741 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr4 162148953 162148978 -22139684 + AT_rich Low_complexity Low_complexity 1 25 0 222 174 0 0 chr4 162149190 162149236 -22139426 + (TA)n Simple_repeat Simple_repeat 2 47 0 238 354 91 20 chr4 162149974 162150172 -22138490 + MIR SINE MIR 5 216 -46 442 309 20 13 chr4 162151477 162151626 -22137036 - MER63A DNA MER1_type -15 195 46 444 37 0 0 chr4 162152041 162152095 -22136567 + (CA)n Simple_repeat Simple_repeat 2 55 0 1118 237 25 25 chr4 162152235 162152593 -22136069 + L1MC1 LINE L1 4595 4952 -1194 222 150 0 0 chr4 162152621 162152661 -22136001 + (GGGA)n Simple_repeat Simple_repeat 3 42 0 3082 222 59 22 chr4 162152695 162153701 -22134961 + L1MC1 LINE L1 4980 6007 -337 522 192 32 32 chr4 162153793 162153918 -22134744 + L1MC1 LINE L1 6209 6333 0 23 54 0 0 chr4 162154426 162154463 -22134199 + AT_rich Low_complexity Low_complexity 1 37 0 29 60 0 0 chr4 162154542 162154592 -22134070 + AT_rich Low_complexity Low_complexity 1 50 0 213 65 0 0 chr4 162155330 162155361 -22133301 + (A)n Simple_repeat Simple_repeat 1 31 0 222 254 102 76 chr4 162156069 162156187 -22132475 - MIR SINE MIR -11 251 131 184 238 0 0 chr4 162156185 162156227 -22132435 - L2 LINE L2 -4 3268 3227 * 266 247 12 37 chr4 162156229 162156310 -22132352 - MIR SINE MIR -128 134 56 334 48 0 0 chr4 162156337 162156379 -22132283 - MADE1 DNA Mariner -32 48 7 195 352 56 42 chr4 162156676 162156818 -22131844 - MIR3 SINE MIR -60 148 5 25 51 0 0 chr4 162157278 162157317 -22131345 + AT_rich Low_complexity Low_complexity 1 39 0 31 26 0 0 chr4 162157374 162157412 -22131250 + AT_rich Low_complexity Low_complexity 1 38 0 25 51 0 0 chr4 162157542 162157581 -22131081 + AT_rich Low_complexity Low_complexity 1 39 0 556 290 92 36 chr4 162158452 162158852 -22129810 - MER57B LTR ERV1 -11 423 1 670 257 32 21 chr4 162159102 162159289 -22129373 + MER5A DNA MER1_type 1 189 0 644 129 0 35 chr4 162159314 162159430 -22129232 - L1PA13 LINE L1 -2 6161 6050 543 205 120 80 chr4 162159864 162160064 -22128598 - MIR SINE MIR -54 208 1 218 214 0 29 chr4 162160195 162160265 -22128397 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 717 278 70 21 chr4 162160619 162160860 -22127802 - MIR SINE MIR -2 260 8 1963 115 7 0 chr4 162162813 162163122 -22125540 + AluSx SINE Alu 3 313 0 21 57 0 0 chr4 162163616 162163651 -22125011 + AT_rich Low_complexity Low_complexity 1 35 0 378 245 19 9 chr4 162163866 162164029 -22124633 + MER58A DNA MER1_type 27 224 0 26 0 0 0 chr4 162164049 162164075 -22124587 + AT_rich Low_complexity Low_complexity 1 26 0 932 249 33 12 chr4 162164085 162164330 -22124332 + L1MD2 LINE L1 6065 6314 -45 1891 120 3 39 chr4 162164498 162164807 -22123855 + AluSg SINE Alu 1 298 -12 22 0 0 0 chr4 162164893 162164915 -22123747 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr4 162166263 162166295 -22122367 + AT_rich Low_complexity Low_complexity 1 32 0 265 307 20 0 chr4 162166384 162166485 -22122177 + GA-rich Low_complexity Low_complexity 2 104 0 639 61 13 0 chr4 162167613 162167702 -22120960 - THE1A LTR MaLR -274 90 1 3544 84 31 2 chr4 162167702 162168188 -22120474 - THE1A-int LTR MaLR 0 1580 1081 6264 116 2 2 chr4 162168196 162169095 -22119567 - THE1A-int LTR MaLR -681 899 1 2725 84 0 0 chr4 162169095 162169450 -22119212 - THE1A LTR MaLR 0 355 1 23 0 0 0 chr4 162169992 162170015 -22118647 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr4 162170471 162170501 -22118161 + AT_rich Low_complexity Low_complexity 1 30 0 1427 340 136 31 chr4 162171006 162172437 -22116225 - L2 LINE L2 -655 2659 1080 27 49 0 0 chr4 162173288 162173329 -22115333 + AT_rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chr4 162174878 162174910 -22113752 + AT_rich Low_complexity Low_complexity 1 32 0 24 32 0 0 chr4 162176509 162176540 -22112122 + AT_rich Low_complexity Low_complexity 1 31 0 189 0 0 0 chr4 162176821 162176842 -22111820 + (CATATA)n Simple_repeat Simple_repeat 2 22 0 22 35 0 0 chr4 162176978 162177007 -22111655 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 162177668 162177690 -22110972 + AT_rich Low_complexity Low_complexity 1 22 0 30 45 0 0 chr4 162178239 162178283 -22110379 + AT_rich Low_complexity Low_complexity 1 44 0 2391 46 0 7 chr4 162178903 162179188 -22109474 - AluY SINE Alu -26 285 3 22 56 0 0 chr4 162179191 162179227 -22109435 + AT_rich Low_complexity Low_complexity 1 36 0 1945 131 3 6 chr4 162179791 162180103 -22108559 - AluSx SINE Alu -1 311 1 291 283 248 45 chr4 162180174 162180680 -22107982 + L2 LINE L2 2702 3313 0 2014 103 0 0 chr4 162181088 162181359 -22107303 - AluSx SINE Alu -2 310 40 1716 159 3 3 chr4 162181535 162181842 -22106820 - AluSx SINE Alu 0 307 1 359 333 23 23 chr4 162182039 162182171 -22106491 + L2 LINE L2 3164 3295 -18 254 332 105 55 chr4 162182279 162182604 -22106058 - MLT1K LTR MaLR 0 588 248 2468 60 0 0 chr4 162182826 162183127 -22105535 + AluY SINE Alu 1 301 -10 1011 202 218 28 chr4 162183131 162183493 -22105169 + L1MC2 LINE L1 5362 5792 -1993 284 240 22 38 chr4 162183493 162183676 -22104986 + (TA)n Simple_repeat Simple_repeat 1 180 0 2040 192 46 15 chr4 162183688 162184142 -22104520 + L1MC2 LINE L1 5817 6284 -60 1057 86 0 0 chr4 162184151 162184291 -22104371 - AluSp/q SINE Alu -2 311 172 32 75 0 0 chr4 162184508 162184575 -22104087 + AT_rich Low_complexity Low_complexity 1 67 0 26 0 0 0 chr4 162184634 162184660 -22104002 + AT_rich Low_complexity Low_complexity 1 26 0 962 152 0 36 chr4 162184662 162184827 -22103835 + AluSg/x SINE Alu 145 303 -7 198 314 117 45 chr4 162185871 162186094 -22102568 + MIR SINE MIR 21 259 -3 703 322 28 8 chr4 162186540 162186795 -22101867 + MIR SINE MIR 2 261 -1 1672 162 60 0 chr4 162186990 162187274 -22101388 + AluSq SINE Alu 1 301 -12 215 325 95 35 chr4 162187503 162187672 -22100990 + MIR3 SINE MIR 16 194 -14 21 0 0 0 chr4 162189312 162189333 -22099329 + AT_rich Low_complexity Low_complexity 1 21 0 2337 95 0 0 chr4 162191048 162191344 -22097318 - AluSg SINE Alu -11 299 4 1975 135 0 4 chr4 162192113 162192394 -22096268 - AluSx SINE Alu -32 280 1 37 23 0 0 chr4 162192910 162192954 -22095708 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr4 162193064 162193086 -22095576 + AT_rich Low_complexity Low_complexity 1 22 0 1246 242 115 16 chr4 162193246 162193630 -22095032 - MLT1J2 LTR MaLR -2 448 27 359 113 113 0 chr4 162193633 162193695 -22094967 - THE1C LTR MaLR 0 364 296 * 465 94 0 0 chr4 162193686 162193750 -22094912 - THE1C LTR MaLR -191 184 121 209 287 15 31 chr4 162193868 162193933 -22094729 + MIR3 SINE MIR 94 160 -48 536 80 40 0 chr4 162194272 162194372 -22094290 + (TAGA)n Simple_repeat Simple_repeat 1 104 0 203 293 110 12 chr4 162195447 162195529 -22093133 + L2 LINE L2 2985 3074 -198 1556 195 3 10 chr4 162196008 162196306 -22092356 + AluJb SINE Alu 3 298 -14 23 33 0 0 chr4 162197024 162197054 -22091608 + AT_rich Low_complexity Low_complexity 1 30 0 1581 109 61 4 chr4 162197464 162197694 -22090968 + AluSg SINE Alu 46 288 -22 23 0 0 0 chr4 162198110 162198133 -22090529 + AT_rich Low_complexity Low_complexity 1 23 0 222 37 0 0 chr4 162200024 162200051 -22088611 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 67 25 0 0 chr4 162200524 162200605 -22088057 + AT_rich Low_complexity Low_complexity 1 81 0 1979 267 27 29 chr4 162200709 162201334 -22087328 - L1ME1 LINE L1 -19 6147 5524 33 25 0 0 chr4 162201435 162201475 -22087187 + AT_rich Low_complexity Low_complexity 1 40 0 1068 324 69 53 chr4 162201821 162202823 -22085839 - L2 LINE L2 -86 3227 2216 21 0 0 0 chr4 162203161 162203182 -22085480 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr4 162203740 162203777 -22084885 + AT_rich Low_complexity Low_complexity 1 37 0 1110 54 0 0 chr4 162203801 162203931 -22084731 + AluY SINE Alu 2 131 -180 843 10 0 0 chr4 162203933 162204029 -22084633 - AluY SINE Alu -35 276 181 1674 59 0 0 chr4 162204130 162204332 -22084330 - AluY SINE Alu -96 215 14 25 31 0 0 chr4 162204501 162204533 -22084129 + AT_rich Low_complexity Low_complexity 1 32 0 228 238 56 8 chr4 162204557 162204683 -22083979 + (TTATA)n Simple_repeat Simple_repeat 2 133 0 2197 88 7 0 chr4 162204691 162204987 -22083675 - AluSp SINE Alu -15 298 1 25 0 0 0 chr4 162205099 162205124 -22083538 + AT_rich Low_complexity Low_complexity 1 25 0 846 195 0 25 chr4 162205132 162205291 -22083371 - FRAM SINE Alu -15 161 7 2814 159 73 25 chr4 162206186 162206734 -22081928 - MER51A LTR ERV1 -42 592 19 469 282 45 55 chr4 162207139 162207451 -22081211 + L1MEd LINE L1 938 1246 -4873 319 376 28 19 chr4 162207682 162208046 -22080616 + L1ME3A LINE L1 5488 5854 -316 26 30 0 0 chr4 162208280 162208313 -22080349 + AT_rich Low_complexity Low_complexity 1 33 0 382 151 11 11 chr4 162208324 162208417 -22080245 + GA-rich Low_complexity Low_complexity 4 96 0 307 353 70 21 chr4 162208818 162209005 -22079657 + L2 LINE L2 2219 2414 -900 315 274 11 42 chr4 162209258 162209353 -22079309 + L2 LINE L2 3221 3312 -1 198 306 92 41 chr4 162209386 162209484 -22079178 + MER5A DNA MER1_type 87 189 0 1101 117 180 113 chr4 162209620 162209903 -22078759 + AluJb SINE Alu 1 302 0 367 340 108 16 chr4 162209927 162210121 -22078541 - MIR SINE MIR 0 262 51 21 36 0 0 chr4 162210899 162210927 -22077735 + AT_rich Low_complexity Low_complexity 1 28 0 242 273 61 50 chr4 162211275 162211374 -22077288 - L2 LINE L2 -10 3303 3204 225 94 0 0 chr4 162211518 162211550 -22077112 + (TG)n Simple_repeat Simple_repeat 1 32 0 246 348 112 0 chr4 162211675 162211764 -22076898 - L2 LINE L2 -36 3236 3138 862 219 67 24 chr4 162212155 162212365 -22076297 - MER20 DNA MER1_type 0 219 1 229 343 65 9 chr4 162212442 162212550 -22076112 - MIR SINE MIR -111 151 38 1699 89 97 0 chr4 162212666 162212951 -22075711 - AluSx SINE Alu 0 310 1 238 254 168 24 chr4 162213847 162214056 -22074606 - L1ME4a LINE L1 -191 5930 5692 25 0 0 0 chr4 162214991 162215016 -22073646 + AT_rich Low_complexity Low_complexity 1 25 0 29 84 0 0 chr4 162215161 162215232 -22073430 + AT_rich Low_complexity Low_complexity 1 71 0 387 0 0 0 chr4 162215382 162215425 -22073237 + (CA)n Simple_repeat Simple_repeat 1 43 0 2179 114 0 7 chr4 162217000 162217298 -22071364 - AluSc SINE Alu -10 299 4 420 322 39 19 chr4 162217410 162217615 -22071047 - MIR SINE MIR -29 233 25 2100 123 3 0 chr4 162219130 162219438 -22069224 - AluSc SINE Alu 0 309 1 226 94 0 75 chr4 162220384 162220437 -22068225 + (TTCC)n Simple_repeat Simple_repeat 2 50 0 1942 128 23 3 chr4 162220444 162220750 -22067912 - AluSx SINE Alu 0 312 1 210 71 0 0 chr4 162220949 162220977 -22067685 + (TG)n Simple_repeat Simple_repeat 1 28 0 2261 45 0 0 chr4 162221572 162221873 -22066789 - AluY SINE Alu 0 312 12 186 336 82 48 chr4 162221890 162222036 -22066626 + L2 LINE L2 2910 3060 -212 384 351 15 8 chr4 162223366 162223500 -22065162 + L2 LINE L2 3134 3268 -4 1834 171 8 32 chr4 162223537 162223911 -22064751 - MLT1A1 LTR MaLR 0 365 1 269 250 67 29 chr4 162224174 162224278 -22064384 - L2 LINE L2 -75 3238 3131 685 297 138 50 chr4 162224526 162225027 -22063635 + L2 LINE L2 2433 2977 -337 231 88 0 0 chr4 162225194 162225228 -22063434 + (TA)n Simple_repeat Simple_repeat 1 34 0 250 387 42 25 chr4 162225284 162225403 -22063259 + L2 LINE L2 3141 3261 -11 31 26 0 0 chr4 162225491 162225529 -22063133 + AT_rich Low_complexity Low_complexity 1 38 0 22 56 0 0 chr4 162226409 162226445 -22062217 + AT_rich Low_complexity Low_complexity 1 36 0 28 29 0 0 chr4 162226692 162226727 -22061935 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr4 162226869 162226889 -22061773 + (A)n Simple_repeat Simple_repeat 1 20 0 27 49 0 0 chr4 162226990 162227031 -22061631 + AT_rich Low_complexity Low_complexity 1 41 0 212 381 97 0 chr4 162227894 162228028 -22060634 - MIR SINE MIR -58 204 58 1816 119 0 0 chr4 162228365 162228632 -22060030 + AluSx SINE Alu 41 307 0 2983 109 10 0 chr4 162228876 162229499 -22059163 - L1PA11 LINE L1 0 6174 5424 29 0 0 0 chr4 162229689 162229718 -22058944 + AT_rich Low_complexity Low_complexity 1 29 0 258 32 0 0 chr4 162229968 162229999 -22058663 + (TG)n Simple_repeat Simple_repeat 2 32 0 285 216 23 23 chr4 162230291 162230379 -22058283 + (TA)n Simple_repeat Simple_repeat 1 88 0 208 320 72 31 chr4 162230662 162230759 -22057903 + MIR SINE MIR 53 153 -109 1068 97 46 0 chr4 162230886 162231138 -22057524 - L1PA11 LINE L1 -61 6113 5728 297 0 0 0 chr4 162232330 162232363 -22056299 + (TG)n Simple_repeat Simple_repeat 2 34 0 25 83 0 0 chr4 162232737 162232797 -22055865 + AT_rich Low_complexity Low_complexity 1 60 0 1951 134 3 3 chr4 162233830 162234136 -22054526 - AluSx SINE Alu -5 307 2 2198 104 3 3 chr4 162234934 162235241 -22053421 - AluSx SINE Alu -4 308 2 696 293 69 4 chr4 162235477 162235709 -22052953 + MIR SINE MIR 11 257 -5 352 273 68 61 chr4 162236182 162236420 -22052242 + MIR SINE MIR 10 251 -11 255 79 0 0 chr4 162236887 162236925 -22051737 + (CA)n Simple_repeat Simple_repeat 1 38 0 2058 108 0 11 chr4 162236933 162237220 -22051442 - AluSx SINE Alu -15 297 14 560 297 133 0 chr4 162237351 162237607 -22051055 - MARNA DNA Mariner -127 459 170 23 0 0 0 chr4 162238019 162238042 -22050620 + AT_rich Low_complexity Low_complexity 1 23 0 6573 58 9 3 chr4 162238052 162239465 -22049197 - L1PA7 LINE L1 0 6154 4729 2354 94 17 9 chr4 162239465 162239815 -22048847 + L1PA7 LINE L1 4381 4733 -1413 464 272 118 30 chr4 162241312 162241481 -22047181 + L2 LINE L2 3130 3313 0 280 351 41 14 chr4 162241758 162242000 -22046662 - LTR33 LTR ERVL 0 521 235 244 276 46 11 chr4 162242086 162242173 -22046489 - LTR33 LTR ERVL -330 191 102 1129 221 34 86 chr4 162243131 162243574 -22045088 - L1ME2 LINE L1 -19 6145 5726 904 223 147 11 chr4 162243736 162244206 -22044456 - L1ME2 LINE L1 -2919 3227 2694 1946 96 0 22 chr4 162244414 162244686 -22043976 + AluY SINE Alu 1 266 -45 378 347 84 21 chr4 162245892 162246131 -22042531 + L2 LINE L2 2196 2449 -865 41 0 0 0 chr4 162246224 162246265 -22042397 + AT_rich Low_complexity Low_complexity 1 41 0 195 330 165 16 chr4 162246281 162246463 -22042199 + L2 LINE L2 2653 2861 -453 201 121 0 0 chr4 162246497 162246530 -22042132 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 14107 31 1 1 chr4 162246530 162248997 -22039665 - L1PA3 LINE L1 0 6155 3688 13686 25 0 0 chr4 162248997 162250647 -22038015 + L1PA3 LINE L1 2032 3681 -2465 22 80 0 0 chr4 162251666 162251716 -22036946 + AT_rich Low_complexity Low_complexity 1 50 0 511 179 16 32 chr4 162251753 162251876 -22036786 - L1MA9 LINE L1 -30 6282 6162 242 140 0 20 chr4 162253810 162253860 -22034802 + (TA)n Simple_repeat Simple_repeat 1 49 0 5430 155 72 5 chr4 162254508 162255926 -22032736 + L1PBa LINE L1 1 1658 -5205 * 13145 205 53 9 chr4 162255923 162259210 -22029452 + L1PBa LINE L1 2616 6100 -762 7010 208 123 18 chr4 162259210 162260798 -22027864 + MER52A LTR ERV1 1 1755 0 5155 88 21 26 chr4 162260798 162261569 -22027093 + L1PB1 LINE L1 5384 6150 -1 1672 199 3 3 chr4 162261662 162261969 -22026693 + AluJo SINE Alu 1 307 -5 717 312 54 17 chr4 162262214 162262512 -22026150 - MLT1J2 LTR MaLR -121 329 21 3855 127 61 56 chr4 162264317 162265087 -22023575 - LTR1 LTR ERV1 0 785 12 23 86 0 0 chr4 162267165 162267223 -22021439 + AT_rich Low_complexity Low_complexity 1 58 0 26 0 0 0 chr4 162267806 162267832 -22020830 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr4 162267865 162267895 -22020767 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 162267992 162268014 -22020648 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 162269081 162269103 -22019559 + AT_rich Low_complexity Low_complexity 1 22 0 2065 111 3 13 chr4 162269664 162269962 -22018700 + AluY SINE Alu 1 295 -16 243 0 0 0 chr4 162270085 162270112 -22018550 + (T)n Simple_repeat Simple_repeat 1 27 0 513 297 23 87 chr4 162270342 162270608 -22018054 - MIR SINE MIR -1 261 13 27 49 0 0 chr4 162272326 162272367 -22016295 + AT_rich Low_complexity Low_complexity 1 41 0 2119 113 0 0 chr4 162272411 162272703 -22015959 - AluY SINE Alu -19 292 1 2763 190 68 75 chr4 162273067 162273851 -22014811 - L1 LINE L1 -1134 5012 4235 2763 185 85 11 chr4 162273841 162274733 -22013929 + L1MB1 LINE L1 4954 5886 -303 252 0 0 0 chr4 162274867 162274895 -22013767 + (T)n Simple_repeat Simple_repeat 1 28 0 653 259 34 98 chr4 162275124 162275390 -22013272 - MIR SINE MIR -1 261 13 195 42 0 0 chr4 162276559 162276583 -22012079 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 196 329 14 0 chr4 162276748 162276821 -22011841 + MIR SINE MIR 161 234 -28 211 196 137 0 chr4 162277102 162277153 -22011509 - MIR SINE MIR -145 117 60 217 386 14 0 chr4 162277461 162277601 -22011061 - MIR SINE MIR -2 260 119 23 0 0 0 chr4 162277618 162277641 -22011021 + AT_rich Low_complexity Low_complexity 1 23 0 250 388 12 0 chr4 162277721 162277806 -22010856 - MIR SINE MIR -151 111 26 3509 202 22 48 chr4 162277824 162278537 -22010125 - L1MB3 LINE L1 -67 6116 5438 2140 79 0 4 chr4 162278537 162278836 -22009826 - AluY SINE Alu 0 300 3 3509 202 22 48 chr4 162278836 162279312 -22009350 - L1MB3 LINE L1 -745 5438 4951 650 162 45 98 chr4 162279308 162279531 -22009131 - L1M4 LINE L1 -404 5779 5572 * 276 222 16 0 chr4 162279660 162279723 -22008939 + MER58 DNA MER1_type 2356 2419 -1 264 336 9 0 chr4 162279759 162279869 -22008793 + L2 LINE L2 1222 1332 -1982 651 217 0 0 chr4 162279870 162279990 -22008672 + FLAM_C SINE Alu 1 120 -23 297 0 0 0 chr4 162280006 162280039 -22008623 + (TG)n Simple_repeat Simple_repeat 2 34 0 335 59 0 20 chr4 162280306 162280357 -22008305 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 378 333 53 6 chr4 162280946 162281117 -22007545 + MIR SINE MIR 58 236 -26 1469 161 112 7 chr4 162281117 162281421 -22007241 - MER44D DNA MER2_type -1 608 3 231 342 86 29 chr4 162281664 162281907 -22006755 + L2 LINE L2 2423 2679 -635 26 0 0 0 chr4 162282640 162282666 -22005996 + AT_rich Low_complexity Low_complexity 1 26 0 1868 255 39 57 chr4 162282865 162283500 -22005162 + MLT1E2 LTR MaLR 1 624 -2 245 217 58 0 chr4 162283626 162283695 -22004967 + MLT1D LTR MaLR 431 503 -2 28 48 0 0 chr4 162285534 162285576 -22003086 + AT_rich Low_complexity Low_complexity 1 42 0 305 369 62 11 chr4 162287384 162287560 -22001102 + MIR SINE MIR 15 199 -63 278 371 107 0 chr4 162287998 162288176 -22000486 - MIR SINE MIR -29 233 37 436 227 109 0 chr4 162288543 162288662 -22000000 - MER5A DNA MER1_type 0 189 58 566 343 36 11 chr4 162288993 162289231 -21999431 + MIR SINE MIR 10 250 -12 440 277 132 29 chr4 162290431 162290741 -21997921 + L1MDa LINE L1 2262 2603 -3937 1682 181 44 0 chr4 162291280 162291618 -21997044 + L1 LINE L1 4640 4992 -1154 407 228 41 24 chr4 162291596 162291719 -21996943 + L1MA9 LINE L1 6150 6274 -38 * 283 151 110 0 chr4 162291997 162292070 -21996592 - MER53 DNA DNA -104 85 5 213 261 22 11 chr4 162292208 162292300 -21996362 + (TA)n Simple_repeat Simple_repeat 2 94 0 749 227 6 11 chr4 162292956 162293132 -21995530 + MER5B DNA MER1_type 4 178 0 2143 122 0 0 chr4 162293327 162293622 -21995040 + AluSx SINE Alu 1 295 -17 6236 200 164 27 chr4 162293850 162295394 -21993268 - MER52A LTR ERV1 0 1755 1 822 248 10 15 chr4 162295611 162295809 -21992853 + MER58A DNA MER1_type 22 218 -6 401 357 21 21 chr4 162296748 162296891 -21991771 + MER91A DNA MER1_type 29 171 -25 1236 254 33 10 chr4 162297515 162297912 -21990750 - LTR37A LTR ERV1 0 426 21 1639 173 0 39 chr4 162298311 162298618 -21990044 - AluJo SINE Alu -3 309 15 1922 141 58 35 chr4 162298710 162299106 -21989556 + L1MA6 LINE L1 5891 6295 -5 291 261 58 0 chr4 162302162 162302231 -21986431 + MIR SINE MIR 151 223 -39 2466 65 3 0 chr4 162302313 162302623 -21986039 - AluY SINE Alu 0 311 1 34 24 0 0 chr4 162302840 162302881 -21985781 + AT_rich Low_complexity Low_complexity 1 41 0 1797 159 0 0 chr4 162303000 162303304 -21985358 + AluSx SINE Alu 1 304 0 842 142 0 58 chr4 162303304 162303459 -21985203 + AluSg/x SINE Alu 135 280 -32 1096 53 41 6 chr4 162303466 162303637 -21985025 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 202 124 26 53 chr4 162303640 162303753 -21984909 + GA-rich Low_complexity Low_complexity 2 111 0 4452 149 46 32 chr4 162304766 162305661 -21983001 + L1MC1 LINE L1 5427 6333 0 187 274 59 0 chr4 162305731 162305782 -21982880 + L2 LINE L2 3230 3283 -30 24 0 0 0 chr4 162305887 162305911 -21982751 + AT_rich Low_complexity Low_complexity 1 24 0 226 195 35 23 chr4 162307004 162307091 -21981571 + (TTAA)n Simple_repeat Simple_repeat 4 91 0 276 323 58 26 chr4 162307117 162307306 -21981356 + L2 LINE L2 1863 2057 -1257 675 37 0 0 chr4 162307391 162307473 -21981189 + (TA)n Simple_repeat Simple_repeat 1 82 0 601 253 52 36 chr4 162307627 162307821 -21980841 + MIR SINE MIR 66 262 0 281 314 124 18 chr4 162308534 162308703 -21979959 + L3b LINE CR1 1303 1489 -94 1989 135 0 0 chr4 162309094 162309108 -21979554 - AluSx SINE Alu -16 296 283 288 0 0 0 chr4 162309108 162309140 -21979522 + (TG)n Simple_repeat Simple_repeat 1 32 0 1989 135 0 0 chr4 162309140 162309421 -21979241 - AluSx SINE Alu -28 284 1 486 154 13 7 chr4 162309731 162309817 -21978845 - L1MA4 LINE L1 -568 5604 5521 3350 148 13 45 chr4 162309817 162310490 -21978172 + L1MA4 LINE L1 5626 6284 -16 486 154 13 7 chr4 162310490 162310505 -21978157 - L1M1 LINE L1 -651 5521 5508 34 24 0 0 chr4 162310538 162310579 -21978083 + AT_rich Low_complexity Low_complexity 1 41 0 291 190 0 0 chr4 162310658 162310716 -21977946 + (TA)n Simple_repeat Simple_repeat 2 59 0 183 308 0 0 chr4 162310750 162310802 -21977860 + MIR SINE MIR 90 141 -67 30 83 0 0 chr4 162312427 162312499 -21976163 + AT_rich Low_complexity Low_complexity 1 72 0 234 154 0 99 chr4 162312529 162312620 -21976042 + T-rich Low_complexity Low_complexity 5 86 0 677 267 34 46 chr4 162312780 162313042 -21975620 - MLT1C LTR MaLR 0 467 209 728 334 159 25 chr4 162313182 162313243 -21975419 - L2 LINE L2 -164 3149 3098 1859 138 7 0 chr4 162313243 162313559 -21975103 - AluSx SINE Alu 0 318 1 728 334 159 25 chr4 162313559 162314522 -21974140 - L2 LINE L2 -215 3098 1968 24 32 0 0 chr4 162314811 162314842 -21973820 + AT_rich Low_complexity Low_complexity 1 31 0 312 292 163 49 chr4 162315745 162316009 -21972653 + L1ME LINE L1 5338 5631 -490 251 342 51 0 chr4 162316380 162316497 -21972165 - MER103 DNA DNA -43 123 1 1486 175 43 142 chr4 162316818 162317241 -21971421 - MSTB LTR MaLR 0 426 77 2058 293 68 11 chr4 162317541 162317576 -21971086 - L1M4 LINE L1 -1968 4178 4146 720 180 28 22 chr4 162317576 162317754 -21970908 - L1MB8 LINE L1 0 6178 6000 2058 293 68 11 chr4 162317754 162319043 -21969619 - L1M4 LINE L1 -2000 4146 2777 1586 206 3 0 chr4 162319607 162319894 -21968768 + AluJb SINE Alu 1 288 -24 23 33 0 0 chr4 162319974 162320004 -21968658 + AT_rich Low_complexity Low_complexity 1 30 0 1524 184 31 10 chr4 162320058 162320351 -21968311 - AluJo SINE Alu -8 304 6 29 47 0 0 chr4 162321340 162321383 -21967279 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr4 162323287 162323308 -21965354 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 162324141 162324162 -21964500 + AT_rich Low_complexity Low_complexity 1 21 0 248 253 42 145 chr4 162324184 162324350 -21964312 - MIR SINE MIR -66 196 48 28 91 0 0 chr4 162324798 162324875 -21963787 + AT_rich Low_complexity Low_complexity 1 77 0 1619 146 164 75 chr4 162325456 162325827 -21962835 - MER4A LTR ERV1 0 664 261 523 153 10 10 chr4 162325827 162325925 -21962737 - MER4A LTR ERV1 -566 98 1 357 308 32 12 chr4 162326482 162326670 -21961992 - LTR65 LTR ERV1 -6 663 380 2005 164 7 55 chr4 162326683 162327086 -21961576 - MLT1B LTR MaLR -6 384 1 283 250 36 79 chr4 162327252 162327392 -21961270 - LTR65 LTR ERV1 -516 153 20 960 127 0 7 chr4 162329255 162329397 -21959265 + AluJo SINE Alu 1 141 -171 28 48 0 0 chr4 162329434 162329476 -21959186 + AT_rich Low_complexity Low_complexity 1 42 0 748 289 26 17 chr4 162329583 162329815 -21958847 + MIR SINE MIR 5 238 -24 224 337 20 20 chr4 162330761 162330862 -21957800 - MIR SINE MIR -109 153 53 2021 102 3 14 chr4 162330954 162331133 -21957529 - AluSx SINE Alu 0 306 130 186 43 0 0 chr4 162331133 162331156 -21957506 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2021 102 3 14 chr4 162331156 162331285 -21957377 - AluSx SINE Alu -176 130 1 872 219 0 24 chr4 162331420 162331625 -21957037 - L1MA8 LINE L1 -155 6136 5937 1874 124 13 30 chr4 162331647 162331946 -21956716 - MLT1A1 LTR MaLR -53 312 19 303 28 0 0 chr4 162331957 162331993 -21956669 + (CA)n Simple_repeat Simple_repeat 2 37 0 1678 155 11 0 chr4 162332125 162332403 -21956259 - L1MA8 LINE L1 -350 5950 5670 329 175 38 0 chr4 162332403 162332476 -21956186 + L1MA8 LINE L1 6198 6280 -11 3252 169 13 18 chr4 162332581 162334143 -21954519 + L1PB1 LINE L1 4086 5793 -358 282 56 0 0 chr4 162334143 162334179 -21954483 + (CA)n Simple_repeat Simple_repeat 2 37 0 3252 169 13 18 chr4 162334179 162334537 -21954125 + L1PB1 LINE L1 5793 6151 0 25 75 0 0 chr4 162334540 162334593 -21954069 + AT_rich Low_complexity Low_complexity 1 53 0 1295 251 103 71 chr4 162334631 162335349 -21953313 + L1M4 LINE L1 826 1566 -4976 1801 243 81 49 chr4 162335367 162335660 -21953002 + L1M4 LINE L1 3504 3786 -2858 2401 73 0 0 chr4 162335660 162335961 -21952701 + AluY SINE Alu 1 301 -10 1801 243 81 49 chr4 162335961 162336466 -21952196 + L1M4 LINE L1 3786 4328 -2316 1046 247 67 87 chr4 162336469 162336576 -21952086 - MLT1B LTR MaLR -7 383 275 2090 136 0 0 chr4 162336576 162336885 -21951777 + AluSc SINE Alu 1 309 0 1046 247 67 87 chr4 162336885 162337166 -21951496 - MLT1B LTR MaLR -115 275 3 1140 248 22 16 chr4 162337182 162337230 -21951432 + L1M4 LINE L1 4337 4383 -2261 234 0 0 0 chr4 162337230 162337256 -21951406 + (CA)n Simple_repeat Simple_repeat 2 27 0 1140 248 22 16 chr4 162337256 162337585 -21951077 + L1M4 LINE L1 4383 4730 -1914 204 246 43 14 chr4 162337585 162337654 -21951008 + (TATATG)n Simple_repeat Simple_repeat 3 73 0 405 238 46 53 chr4 162337654 162337805 -21950857 + L1M4 LINE L1 4724 4873 -1771 435 92 0 0 chr4 162337908 162337973 -21950689 - Alu SINE Alu -245 65 1 5651 167 10 1 chr4 162337973 162339582 -21949080 - L1P5 LINE L1 -367 5784 4163 24 32 0 0 chr4 162339588 162339619 -21949043 + AT_rich Low_complexity Low_complexity 1 31 0 256 159 0 0 chr4 162340129 162340173 -21948489 - Alu SINE Alu -257 45 2 547 301 82 18 chr4 162340425 162340644 -21948018 + MIR SINE MIR 6 238 -24 25 0 0 0 chr4 162341158 162341183 -21947479 + AT_rich Low_complexity Low_complexity 1 25 0 3436 134 44 5 chr4 162341451 162342025 -21946637 - L1MA2 LINE L1 0 6304 5709 5497 191 39 20 chr4 162342019 162343274 -21945388 - L1 LINE L1 -1881 4265 2987 585 60 20 20 chr4 162344995 162345095 -21943567 + (TCTA)n Simple_repeat Simple_repeat 2 101 0 355 365 66 29 chr4 162345204 162345445 -21943217 - L2 LINE L2 -2875 439 190 2113 90 3 3 chr4 162345864 162346153 -21942509 + AluSg SINE Alu 6 294 -16 2225 109 0 0 chr4 162347394 162347697 -21940965 + AluSq SINE Alu 1 303 -10 290 305 49 0 chr4 162347860 162347942 -21940720 + L2 LINE L2 3191 3276 -37 194 196 39 0 chr4 162347961 162348012 -21940650 + GA-rich Low_complexity Low_complexity 3 55 0 199 424 29 0 chr4 162348392 162348564 -21940098 + L2 LINE L2 32 208 -3106 722 292 17 8 chr4 162348582 162348818 -21939844 + L2 LINE L2 3074 3311 -2 569 76 13 0 chr4 162349689 162349807 -21938855 + AluSg/x SINE Alu 204 322 0 303 145 36 36 chr4 162349847 162349930 -21938732 + L1MA10 LINE L1 6250 6332 -2 228 376 50 10 chr4 162351410 162351511 -21937151 - MIR SINE MIR -137 125 21 24 53 0 0 chr4 162352343 162352381 -21936281 + AT_rich Low_complexity Low_complexity 1 38 0 2041 93 4 0 chr4 162353145 162353413 -21935249 + AluSx SINE Alu 11 279 -33 23 33 0 0 chr4 162353416 162353446 -21935216 + AT_rich Low_complexity Low_complexity 1 30 0 218 240 0 40 chr4 162353680 162353730 -21934932 + MIR SINE MIR 60 107 -155 2220 111 0 0 chr4 162354034 162354340 -21934322 + AluSx SINE Alu 1 306 -6 198 0 0 0 chr4 162354564 162354586 -21934076 + (TG)n Simple_repeat Simple_repeat 1 22 0 24 96 0 0 chr4 162356696 162356769 -21931893 + AT_rich Low_complexity Low_complexity 1 73 0 25 31 0 0 chr4 162357800 162357832 -21930830 + AT_rich Low_complexity Low_complexity 1 32 0 2462 52 0 7 chr4 162357884 162358192 -21930470 - AluY SINE Alu -5 306 1 457 366 34 27 chr4 162358411 162358703 -21929959 - L2 LINE L2 -681 2633 2340 1141 244 73 25 chr4 162358888 162359244 -21929418 - MLT1A2 LTR MaLR -1 373 1 231 331 47 34 chr4 162359303 162359451 -21929211 - L2 LINE L2 -1313 2001 1852 524 56 14 0 chr4 162359675 162359747 -21928915 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 1542 178 45 20 chr4 162360153 162360445 -21928217 - AluJo SINE Alu -11 301 3 296 79 0 0 chr4 162361199 162361237 -21927425 - L1MA9 LINE L1 -368 5944 5907 953 169 85 75 chr4 162361367 162361686 -21926976 - MER33 DNA MER1_type -1 323 2 4482 147 19 39 chr4 162361946 162362133 -21926529 - L1PB4 LINE L1 -3 6153 5964 2337 62 23 0 chr4 162362133 162362437 -21926225 - AluY SINE Alu 0 311 1 4482 147 19 39 chr4 162362437 162363095 -21925567 - L1PB4 LINE L1 -192 5964 5325 198 0 0 0 chr4 162363324 162363346 -21925316 + (A)n Simple_repeat Simple_repeat 1 22 0 21 71 0 0 chr4 162364345 162364387 -21924275 + AT_rich Low_complexity Low_complexity 1 42 0 434 219 6 110 chr4 162365694 162365858 -21922804 - MER63 DNA MER1_type -62 774 2 210 176 0 95 chr4 162367184 162367258 -21921404 + T-rich Low_complexity Low_complexity 1 67 0 2092 244 53 24 chr4 162368614 162369315 -21919347 + L1M4 LINE L1 4530 5250 -896 22 0 0 0 chr4 162369782 162369804 -21918858 + AT_rich Low_complexity Low_complexity 1 22 0 216 380 53 35 chr4 162369865 162370036 -21918626 + L2 LINE L2 2537 2710 -604 1434 116 14 5 chr4 162370387 162370603 -21918059 + AluSg/x SINE Alu 89 306 -6 635 198 126 84 chr4 162370708 162371148 -21917514 - MLT1D LTR MaLR 0 626 1 1933 181 17 0 chr4 162371149 162371508 -21917154 + MLT1A1 LTR MaLR 1 365 0 2155 102 0 0 chr4 162371965 162372292 -21916370 + AluSq SINE Alu 1 327 0 1636 168 180 27 chr4 162372802 162373207 -21915455 - MLT1C LTR MaLR 0 467 1 181 136 23 23 chr4 162376277 162376321 -21912341 + T-rich Low_complexity Low_complexity 2 45 0 2756 200 37 14 chr4 162376803 162377369 -21911293 + MER21B LTR ERV1 212 790 -73 680 260 21 10 chr4 162377370 162377562 -21911100 + MER21B LTR ERV1 667 860 -3 218 313 35 52 chr4 162377759 162377874 -21910788 - MIR SINE MIR -78 130 18 22 35 0 0 chr4 162378011 162378040 -21910622 + AT_rich Low_complexity Low_complexity 1 29 0 2579 273 52 51 chr4 162378508 162380574 -21908088 + L1ME1 LINE L1 3902 5967 -199 1970 138 135 11 chr4 162380574 162380952 -21907710 - MSTA LTR MaLR -3 425 1 2579 273 52 51 chr4 162380952 162381122 -21907540 + L1ME1 LINE L1 5967 6135 -31 24 77 0 0 chr4 162381229 162381281 -21907381 + AT_rich Low_complexity Low_complexity 1 52 0 42 36 0 0 chr4 162381769 162381825 -21906837 + AT_rich Low_complexity Low_complexity 1 56 0 448 104 0 15 chr4 162384254 162384341 -21904321 - AluSc SINE Alu 0 298 213 201 74 0 0 chr4 162385316 162385343 -21903319 + (TA)n Simple_repeat Simple_repeat 1 27 0 2324 93 0 3 chr4 162385730 162386041 -21902621 + AluSx SINE Alu 3 312 0 326 321 44 22 chr4 162386138 162386275 -21902387 + MIR SINE MIR 8 147 -115 373 107 0 0 chr4 162386282 162386338 -21902324 - MADE1 DNA Mariner 0 80 25 433 97 0 56 chr4 162386348 162386420 -21902242 - MADE1 DNA Mariner -12 68 1 275 304 22 22 chr4 162386420 162386512 -21902150 + MIR SINE MIR 150 241 -21 37 76 0 0 chr4 162386681 162386760 -21901902 + AT_rich Low_complexity Low_complexity 1 79 0 2004 90 52 10 chr4 162387054 162387343 -21901319 - AluSc SINE Alu -8 301 1 23 33 0 0 chr4 162388298 162388328 -21900334 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 162388894 162388915 -21899747 + AT_rich Low_complexity Low_complexity 1 21 0 487 260 7 0 chr4 162390699 162390849 -21897813 - L1MA10 LINE L1 -1 6333 6183 21 36 0 0 chr4 162390860 162390888 -21897774 + AT_rich Low_complexity Low_complexity 1 28 0 500 219 0 65 chr4 162390902 162390948 -21897714 - L1MB1 LINE L1 -25 6164 6117 2813 13 0 0 chr4 162390948 162391260 -21897402 - AluYb8 SINE Alu -6 312 1 500 219 0 65 chr4 162391260 162391336 -21897326 - L1MB1 LINE L1 -72 6117 6050 1306 304 46 38 chr4 162441340 162442041 -21846621 + L1M4c LINE L1 754 1465 -4919 1896 150 3 7 chr4 162442041 162442335 -21846327 - AluSx SINE Alu -19 293 1 1306 304 46 38 chr4 162442335 162442596 -21846066 + L1M4c LINE L1 1465 1723 -4661 29 47 0 0 chr4 162444073 162444116 -21844546 + AT_rich Low_complexity Low_complexity 1 43 0 463 311 104 22 chr4 162444442 162444758 -21843904 - MLT1H LTR MaLR -183 412 4 27 62 0 0 chr4 162444838 162444886 -21843776 + AT_rich Low_complexity Low_complexity 1 48 0 271 228 103 73 chr4 162445769 162445905 -21842757 - LTR40a LTR ERVL -377 142 3 24 0 0 0 chr4 162446116 162446140 -21842522 + AT_rich Low_complexity Low_complexity 1 24 0 683 269 20 37 chr4 162447071 162447316 -21841346 + L1MD2 LINE L1 6107 6347 -12 1907 162 0 0 chr4 162447377 162447680 -21840982 - AluSx SINE Alu -6 306 4 218 237 13 0 chr4 162447811 162447887 -21840775 + (TA)n Simple_repeat Simple_repeat 1 77 0 1854 224 29 24 chr4 162447920 162448376 -21840286 + MLT1C LTR MaLR 6 463 -4 599 258 55 16 chr4 162448647 162448829 -21839833 + MER3 DNA MER1_type 19 207 -2 302 252 56 140 chr4 162450010 162450153 -21838509 - L2 LINE L2 -1 3312 3182 691 188 15 15 chr4 162450789 162450922 -21837740 - FLAM_C SINE Alu 0 133 1 1001 243 33 12 chr4 162451759 162452002 -21836660 - MIR SINE MIR 0 262 15 437 322 84 17 chr4 162453046 162453285 -21835377 + LTR33 LTR ERVL 193 447 -74 1113 215 159 51 chr4 162453934 162454386 -21834276 + MLT1D LTR MaLR 2 502 -3 601 286 70 26 chr4 162454391 162454618 -21834044 - MIR SINE MIR -25 237 1 2279 127 111 5 chr4 162456001 162456388 -21832274 - MSTA LTR MaLR 0 428 1 2053 130 32 11 chr4 162456742 162457089 -21831573 - L1MA3 LINE L1 -3 6302 5949 1072 119 0 0 chr4 162457089 162457248 -21831414 + L1MA3 LINE L1 5796 5954 -351 250 255 10 69 chr4 162457646 162457748 -21830914 - MIR SINE MIR -46 216 121 2408 142 3 3 chr4 162458139 162458512 -21830150 + THE1C LTR MaLR 1 373 -2 230 316 86 74 chr4 162459741 162460067 -21828595 - L2 LINE L2 -166 3147 2818 759 273 21 50 chr4 162460073 162460497 -21828165 - MLT1A2 LTR MaLR -4 392 1 1491 312 187 30 chr4 162460503 162461763 -21826899 - L2 LINE L2 -510 2804 1347 26 50 0 0 chr4 162461817 162461857 -21826805 + AT_rich Low_complexity Low_complexity 1 40 0 2184 116 0 0 chr4 162462048 162462350 -21826312 - AluSg SINE Alu -8 302 1 306 0 0 0 chr4 162463526 162463560 -21825102 + (CA)n Simple_repeat Simple_repeat 2 35 0 2075 117 0 0 chr4 162463987 162464277 -21824385 - AluSg SINE Alu -19 291 2 1449 157 4 0 chr4 162464357 162464599 -21824063 + L1PA14 LINE L1 5 247 -7334 * 5793 158 8 61 chr4 162464596 162466464 -21822198 + L1PA14 LINE L1 5850 7599 0 192 111 0 0 chr4 162467460 162467496 -21821166 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 25 65 0 0 chr4 162467885 162467931 -21820731 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr4 162470075 162470098 -21818564 + AT_rich Low_complexity Low_complexity 1 23 0 688 289 16 5 chr4 162470102 162470289 -21818373 - MIR SINE MIR -11 251 63 601 216 67 0 chr4 162471400 162471534 -21817128 + FRAM SINE Alu 9 151 -25 1174 75 0 32 chr4 162471538 162471724 -21816938 + (CATAA)n Simple_repeat Simple_repeat 1 180 0 617 266 118 46 chr4 162471747 162472338 -21816324 - LTR50 LTR ERVL -2 793 8 307 344 49 18 chr4 162472346 162472509 -21816153 + MIR SINE MIR 92 259 -3 21 0 0 0 chr4 162472887 162472908 -21815754 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 162473151 162473172 -21815490 + AT_rich Low_complexity Low_complexity 1 21 0 2019 115 0 0 chr4 162473341 162473640 -21815022 - AluSc SINE Alu 0 299 1 2828 176 76 3 chr4 162473766 162474358 -21814304 + LTR24C LTR ERV1 1 635 0 2045 182 41 7 chr4 162474423 162474835 -21813827 - MSTB LTR MaLR 0 426 1 1995 138 47 76 chr4 162475281 162475658 -21813004 + LTR23 LTR ERV1 3 366 -71 2180 121 0 0 chr4 162475658 162475965 -21812697 + AluSg SINE Alu 3 309 -1 1995 138 47 76 chr4 162475965 162476035 -21812627 + LTR23 LTR ERV1 366 437 0 474 204 27 0 chr4 162476872 162476985 -21811677 + HUERS-P1 LTR ERV1 1895 2096 -3939 186 71 0 0 chr4 162476992 162477020 -21811642 + (TA)n Simple_repeat Simple_repeat 2 29 0 745 143 45 8 chr4 162477156 162477289 -21811373 + LTR23 LTR ERV1 247 384 -53 1618 186 29 0 chr4 162477291 162477598 -21811064 - AluJb SINE Alu 0 316 2 1032 274 88 58 chr4 162477603 162478117 -21810545 + L1M4 LINE L1 41 569 -5973 22 0 0 0 chr4 162480252 162480274 -21808388 + AT_rich Low_complexity Low_complexity 1 22 0 1533 190 14 0 chr4 162480509 162480793 -21807869 + AluJb SINE Alu 1 288 -24 2145 121 0 0 chr4 162481911 162482209 -21806453 - AluSx SINE Alu -14 298 1 27 0 0 0 chr4 162483287 162483314 -21805348 + AT_rich Low_complexity Low_complexity 1 27 0 2350 76 0 7 chr4 162483359 162483661 -21805001 + AluY SINE Alu 1 300 -11 30 27 0 0 chr4 162487077 162487114 -21801548 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr4 162488437 162488472 -21800190 + AT_rich Low_complexity Low_complexity 1 35 0 371 288 104 0 chr4 162489387 162489512 -21799150 - MIR SINE MIR 0 262 125 23 68 0 0 chr4 162490392 162490436 -21798226 + AT_rich Low_complexity Low_complexity 1 44 0 22 70 0 0 chr4 162490893 162490936 -21797726 + AT_rich Low_complexity Low_complexity 1 43 0 202 356 14 14 chr4 162490954 162491027 -21797635 + MIR SINE MIR 30 102 -160 484 312 62 54 chr4 162491171 162491559 -21797103 + MLT1K LTR MaLR 186 576 -12 876 217 46 68 chr4 162492131 162492460 -21796202 - MER93b LTR ERV1 -2 371 74 1230 82 5 52 chr4 162493893 162494087 -21794575 - MER30B DNA MER1_type 0 190 6 304 303 96 50 chr4 162494846 162495044 -21793618 - MIR SINE MIR -55 207 1 2490 37 3 3 chr4 162496819 162497117 -21791545 - AluY SINE Alu -13 298 1 185 313 94 0 chr4 162497433 162497497 -21791165 + L2 LINE L2 3244 3313 0 25 31 0 0 chr4 162498462 162498494 -21790168 + AT_rich Low_complexity Low_complexity 1 32 0 20892 161 27 15 chr4 162498694 162503638 -21785024 - L1MA3 LINE L1 -17 7707 2632 2401 82 0 0 chr4 162503638 162503943 -21784719 - AluY SINE Alu -6 305 1 20892 161 27 15 chr4 162503943 162506591 -21782071 - L1MA3 LINE L1 -5092 2632 16 610 329 66 30 chr4 162506699 162507140 -21781522 - LTR16B LTR ERVL 0 464 8 24 0 0 0 chr4 162507189 162507213 -21781449 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr4 162507596 162507625 -21781037 + AT_rich Low_complexity Low_complexity 1 29 0 906 115 8 0 chr4 162507673 162507803 -21780859 + AluSg/x SINE Alu 164 294 -18 631 252 50 6 chr4 162508539 162508698 -21779964 + MIR3 SINE MIR 19 184 -24 1277 176 191 17 chr4 162509289 162509709 -21778953 - LTR54B LTR ERV1 -5 493 1 1927 96 10 70 chr4 162510225 162510569 -21778093 + AluY SINE Alu 1 326 0 1710 120 10 70 chr4 162511159 162511503 -21777159 + AluY SINE Alu 1 326 0 270 149 0 0 chr4 162513152 162513199 -21775463 - MLT2B1 LTR ERVL 0 520 474 230 198 47 28 chr4 162513207 162513313 -21775349 + (TA)n Simple_repeat Simple_repeat 1 108 0 2345 196 52 13 chr4 162513322 162513782 -21774880 - MLT2B1 LTR ERVL -42 478 1 777 179 70 0 chr4 162513783 162513939 -21774723 - ERVL-B1 LTR ERVL -8 5756 5590 2338 74 3 3 chr4 162513979 162514276 -21774386 - AluY SINE Alu -14 297 1 239 196 0 0 chr4 162514385 162514441 -21774221 - MLT2B1 LTR ERVL 0 520 465 228 203 57 38 chr4 162514442 162514600 -21774062 + (TA)n Simple_repeat Simple_repeat 1 161 0 4482 150 18 67 chr4 162514744 162515598 -21773064 - ERVL-B1 LTR ERVL -181 5583 4772 324 267 78 9 chr4 162515647 162515763 -21772899 - L2 LINE L2 -541 2773 2650 3977 183 66 26 chr4 162516560 162517392 -21771270 - MER6 DNA MER2_type 0 865 1 391 320 8 0 chr4 162517562 162517687 -21770975 - MIR SINE MIR -30 232 107 377 156 306 69 chr4 162518213 162518373 -21770289 - MER6 DNA MER2_type -42 823 626 2326 89 0 3 chr4 162518470 162518773 -21769889 - AluY SINE Alu -9 302 1 598 76 0 89 chr4 162519486 162519629 -21769033 + (TA)n Simple_repeat Simple_repeat 2 131 -14 345 47 0 0 chr4 162519629 162519672 -21768990 + (TC)n Simple_repeat Simple_repeat 2 44 0 598 76 0 89 chr4 162519672 162519686 -21768976 + (TA)n Simple_repeat Simple_repeat 131 145 0 2059 135 3 0 chr4 162519781 162520084 -21768578 + AluSx SINE Alu 1 304 -8 250 301 54 21 chr4 162520415 162520508 -21768154 - MIR SINE MIR -152 110 15 40 21 0 0 chr4 162521164 162521211 -21767451 + AT_rich Low_complexity Low_complexity 1 47 0 11652 224 36 21 chr4 162521250 162522657 -21766005 - L1PA16 LINE L1 -3 6163 4779 194 0 0 37 chr4 162522657 162522684 -21765978 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1633 84 0 0 chr4 162522686 162522900 -21765762 - L1PA6 LINE L1 -13 6141 5928 11652 224 36 21 chr4 162522900 162525658 -21763004 - L1PA16 LINE L1 -1387 4779 1940 2039 114 7 0 chr4 162525658 162525968 -21762694 + AluSg SINE Alu 3 314 0 11652 224 36 21 chr4 162525968 162526073 -21762589 - L1PA16 LINE L1 -4226 1940 1838 26 30 0 0 chr4 162527835 162527868 -21760794 + AT_rich Low_complexity Low_complexity 1 33 0 341 292 11 0 chr4 162528361 162528450 -21760212 + L1MC4 LINE L1 6614 6703 -1339 2067 125 10 0 chr4 162529446 162529741 -21758921 + AluSx SINE Alu 1 298 -14 3440 187 32 35 chr4 162529830 162530514 -21758148 - MER54B LTR ERVL -111 682 1 434 164 0 0 chr4 162530734 162530801 -21757861 - LTR40b LTR ERVL -5 457 391 260 238 36 48 chr4 162531140 162531224 -21757438 - LTR40a LTR ERVL -322 197 115 380 326 115 37 chr4 162531807 162532242 -21756420 - HERVL LTR ERVL -1075 4579 4111 354 258 66 26 chr4 162532293 162532444 -21756218 - HERVL LTR ERVL -1720 4044 3888 305 354 46 8 chr4 162532592 162532722 -21755940 - MIR3 SINE MIR -64 144 10 2127 202 70 11 chr4 162533143 162533379 -21755283 - MER70B LTR ERVL -111 467 246 2363 129 45 42 chr4 162533379 162533806 -21754856 - MSTA LTR MaLR 0 428 1 2127 202 70 11 chr4 162533806 162534010 -21754652 - MER70B LTR ERVL -332 246 1 25 31 0 0 chr4 162534019 162534051 -21754611 + AT_rich Low_complexity Low_complexity 1 32 0 218 367 0 0 chr4 162535538 162535617 -21753045 - L2 LINE L2 -11 3302 3224 1010 229 100 29 chr4 162536236 162536515 -21752147 + MSTD LTR MaLR 2 300 -96 239 196 0 0 chr4 162536678 162536734 -21751928 + MLT2B1 LTR ERVL 465 520 0 2110 95 7 7 chr4 162536843 162537156 -21751506 + AluSc SINE Alu 1 313 0 3288 245 36 19 chr4 162537156 162538330 -21750332 - L1PA12 LINE L1 -4203 3381 2182 802 342 28 21 chr4 162538855 162539244 -21749418 - L1PA12 LINE L1 -6395 1179 788 645 246 14 2 chr4 162539332 162539502 -21749160 - L1MB5 LINE L1 -32 6142 5970 1489 252 21 6 chr4 162539666 162540323 -21748339 + L1M4 LINE L1 2213 2968 -3178 2531 259 73 49 chr4 162540449 162541214 -21747448 - L1M4c LINE L1 -4608 2038 1293 180 0 0 0 chr4 162541214 162541234 -21747428 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2531 259 73 49 chr4 162541234 162541271 -21747391 - L1M4c LINE L1 -5353 1293 1258 2270 115 0 7 chr4 162541271 162541575 -21747087 - AluSq SINE Alu -11 302 1 2531 259 73 49 chr4 162541575 162542691 -21745971 - L1M4c LINE L1 -5388 1258 75 2334 72 0 26 chr4 162543395 162543700 -21744962 + AluY SINE Alu 1 297 -14 248 304 43 43 chr4 162543705 162543820 -21744842 - MIR SINE MIR -99 163 49 23 0 0 0 chr4 162544190 162544213 -21744449 + AT_rich Low_complexity Low_complexity 1 23 0 2133 109 3 10 chr4 162544697 162545009 -21743653 + AluY SINE Alu 1 310 -1 200 268 0 0 chr4 162546184 162546240 -21742422 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 3665 152 56 17 chr4 162546310 162547026 -21741636 + Tigger2 DNA MER2_type 1 744 -1974 1426 166 20 0 chr4 162547088 162547341 -21741321 + Tigger2 DNA MER2_type 2461 2718 0 307 337 69 26 chr4 162547520 162547823 -21740839 - L1MB5 LINE L1 -294 5827 5512 456 351 39 35 chr4 162548192 162548702 -21739960 - L1ME LINE L1 -298 5823 5312 315 238 12 24 chr4 162550302 162550386 -21738276 - MLT1F LTR MaLR -439 103 21 445 310 122 46 chr4 162550497 162551088 -21737574 - L1ME LINE L1 -1299 4847 4212 1926 136 0 4 chr4 162551729 162552029 -21736633 + AluSg SINE Alu 1 299 0 284 306 168 21 chr4 162552305 162552720 -21735942 + LTR33 LTR ERVL 10 521 0 1981 153 0 0 chr4 162553122 162553422 -21735240 - AluSx SINE Alu -12 300 1 1599 191 10 0 chr4 162553781 162554069 -21734593 + AluJo SINE Alu 3 293 -19 316 309 194 0 chr4 162556076 162556215 -21732447 - MIR SINE MIR -13 249 84 21 0 0 0 chr4 162556917 162556938 -21731724 + AT_rich Low_complexity Low_complexity 1 21 0 201 224 184 61 chr4 162557818 162557916 -21730746 + L2 LINE L2 3189 3298 -15 27 62 0 0 chr4 162558166 162558214 -21730448 + AT_rich Low_complexity Low_complexity 1 48 0 2217 102 10 0 chr4 162562626 162562931 -21725731 - AluSc SINE Alu -1 308 1 2241 98 0 3 chr4 162564913 162565209 -21723453 + AluSc SINE Alu 1 295 -14 306 0 0 0 chr4 162565583 162565617 -21723045 + (TG)n Simple_repeat Simple_repeat 2 35 0 1216 256 106 13 chr4 162566379 162566766 -21721896 + L1MD2 LINE L1 97 519 -5920 728 284 89 14 chr4 162567081 162567570 -21721092 - L1M4c LINE L1 -3884 3075 2662 441 307 6 68 chr4 162568052 162568228 -21720434 - L1M4c LINE L1 -6139 720 556 1661 120 3 91 chr4 162568257 162568595 -21720067 + AluSx SINE Alu 1 311 0 756 320 56 66 chr4 162568606 162569121 -21719541 + L2 LINE L2 2804 3313 0 359 339 29 29 chr4 162570388 162570581 -21718081 + ERVL LTR ERVL 3247 3478 -2232 4471 264 52 24 chr4 162570582 162572376 -21716286 + L1MD2 LINE L1 450 2795 -4162 678 281 0 0 chr4 162572638 162572816 -21715846 + L1 LINE L1 3985 4162 -1984 863 196 5 37 chr4 162572863 162573052 -21715610 - AluJb SINE Alu -1 311 129 804 102 0 80 chr4 162573069 162573166 -21715496 - L1P LINE L1 -2316 3830 3746 2136 104 7 0 chr4 162573166 162573453 -21715209 - AluSg SINE Alu -21 289 1 804 102 0 80 chr4 162573453 162573492 -21715170 - L1P LINE L1 -2400 3746 3705 1837 136 7 10 chr4 162573494 162573795 -21714867 + L1PA13 LINE L1 5864 6163 0 3281 271 108 20 chr4 162573841 162574073 -21714589 + L1MD2 LINE L1 4330 4540 -2417 192 97 0 0 chr4 162574073 162574104 -21714558 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 3281 271 108 20 chr4 162574104 162575549 -21713113 + L1MD2 LINE L1 4540 6154 -803 1254 208 8 23 chr4 162575549 162575814 -21712848 + AluJo SINE Alu 48 308 -4 1875 193 19 56 chr4 162575818 162576076 -21712586 + L1MD2 LINE L1 6237 6471 -699 1961 126 0 7 chr4 162576076 162576384 -21712278 - AluSg SINE Alu 0 306 1 1875 193 19 56 chr4 162576384 162576606 -21712056 + L1MD2 LINE L1 6471 6700 -470 658 90 23 130 chr4 162626606 162626697 -21661965 - Tigger3(Golem) DNA MER2_type -493 2535 2471 7573 27 2 0 chr4 162626697 162627742 -21660920 + L1PA4 LINE L1 5106 6152 -3 658 90 23 130 chr4 162627742 162627827 -21660835 - Tigger3(Golem) DNA MER2_type -557 2471 2378 189 311 76 30 chr4 162628936 162629068 -21659594 - MIR SINE MIR -9 253 116 1393 222 63 14 chr4 162629108 162629437 -21659225 + MLT2C1 LTR ERVL 3 353 -44 231 88 0 0 chr4 162629437 162629471 -21659191 + (CA)n Simple_repeat Simple_repeat 1 34 0 1393 222 63 14 chr4 162629471 162629506 -21659156 + MLT2C1 LTR ERVL 353 385 -12 1381 246 40 9 chr4 162629520 162629972 -21658690 + L1 LINE L1 4130 4595 -1551 3642 164 108 19 chr4 162630595 162631353 -21657309 - LTR1B LTR ERV1 0 826 1 2029 131 3 0 chr4 162631367 162631657 -21657005 + AluSg1 SINE Alu 1 291 -18 1629 170 4 46 chr4 162631977 162632183 -21656479 + L1PA13 LINE L1 5337 5550 -608 2387 76 0 0 chr4 162632183 162632473 -21656189 + AluY SINE Alu 1 290 -21 1629 170 4 46 chr4 162632473 162632759 -21655903 + L1PA13 LINE L1 5550 5783 -375 1451 145 20 0 chr4 162632761 162633009 -21655653 + L1PA13 LINE L1 5908 6160 -3 761 244 48 106 chr4 162633024 162633255 -21655407 + L1MEc LINE L1 1539 1782 -4614 2143 124 0 3 chr4 162633255 162633554 -21655108 + AluSp SINE Alu 2 299 -14 761 244 48 106 chr4 162633554 162633867 -21654795 + L1MEc LINE L1 1782 2051 -4345 1046 47 8 0 chr4 162633870 162633997 -21654665 + AluY SINE Alu 170 297 -14 2218 137 11 0 chr4 162634181 162634545 -21654117 + L1 LINE L1 4622 4989 -1157 32 0 0 0 chr4 162634764 162634796 -21653866 + AT_rich Low_complexity Low_complexity 1 32 0 536 303 78 63 chr4 162635976 162636375 -21652287 - MER92A LTR ERV1 -4 408 4 31 96 0 0 chr4 162636675 162636769 -21651893 + AT_rich Low_complexity Low_complexity 1 94 0 456 62 0 0 chr4 162637412 162637476 -21651186 + (TCTCC)n Simple_repeat Simple_repeat 5 68 0 1180 231 4 32 chr4 162637477 162637758 -21650904 - AluJo SINE Alu -39 273 1 558 202 43 48 chr4 162637761 162637949 -21650713 - L1M4c LINE L1 -4776 1870 1684 6694 178 213 24 chr4 162637961 162639437 -21649225 + MER52A LTR ERV1 1 1754 -1 3755 274 36 40 chr4 162639445 162641103 -21647559 - L1M4c LINE L1 -4874 1668 18 26 50 0 0 chr4 162641804 162641844 -21646818 + AT_rich Low_complexity Low_complexity 1 40 0 263 292 0 0 chr4 162642377 162642466 -21646196 + L1MC/D LINE L1 5792 5880 -1928 220 224 31 20 chr4 162642492 162642590 -21646072 + (TATAA)n Simple_repeat Simple_repeat 5 103 0 29 47 0 0 chr4 162642731 162642774 -21645888 + AT_rich Low_complexity Low_complexity 1 43 0 336 94 0 0 chr4 162644112 162644165 -21644497 + (TG)n Simple_repeat Simple_repeat 2 54 0 246 266 171 38 chr4 162644293 162644451 -21644211 - LTR40b LTR ERVL -74 388 210 252 0 0 0 chr4 162644635 162644663 -21643999 + (A)n Simple_repeat Simple_repeat 1 28 0 4736 95 3 10 chr4 162644669 162645341 -21643321 - PABL_B LTR ERV1 0 667 1 1273 240 19 30 chr4 162646013 162646415 -21642247 + MLT1A1 LTR MaLR 1 390 0 24 0 0 0 chr4 162647950 162647974 -21640688 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr4 162648044 162648072 -21640590 + AT_rich Low_complexity Low_complexity 1 28 0 27 62 0 0 chr4 162649657 162649705 -21638957 + AT_rich Low_complexity Low_complexity 1 48 0 439 214 20 0 chr4 162651319 162651417 -21637245 + MSTD LTR MaLR 295 394 -2 202 229 0 0 chr4 162651812 162651860 -21636802 + A-rich Low_complexity Low_complexity 2 49 0 1197 256 31 22 chr4 162653430 162653789 -21634873 - MLT1A1 LTR MaLR 0 365 4 1397 206 101 17 chr4 162654695 162655040 -21633622 - MLT1A2 LTR MaLR 0 374 1 982 243 14 9 chr4 162655055 162655277 -21633385 - MER70A LTR ERVL 0 472 250 2622 189 10 19 chr4 162655280 162655761 -21632901 - MER70-int LTR ERVL -2926 2097 1621 3050 178 56 5 chr4 162655761 162656316 -21632346 - MER70-int LTR ERVL -3832 1191 609 701 168 17 0 chr4 162656318 162656437 -21632225 - MER1A DNA MER1_type -22 511 391 1917 175 31 31 chr4 162656438 162656793 -21631869 + THE1B LTR MaLR 10 364 0 * 2223 161 39 18 chr4 162656793 162657174 -21631488 - MER1A DNA MER1_type -140 389 1 1803 179 59 42 chr4 162657290 162657496 -21631166 - Tigger3b DNA MER2_type -2596 432 231 2121 100 0 36 chr4 162657496 162657797 -21630865 - AluSq SINE Alu -23 290 1 1803 179 59 42 chr4 162657797 162658015 -21630647 - Tigger3b DNA MER2_type -2797 231 1 284 316 68 17 chr4 162658032 162658149 -21630513 + L2 LINE L2 3150 3272 0 573 349 78 0 chr4 162658438 162658693 -21629969 - MLT1J1 LTR MaLR -170 276 2 2029 109 0 4 chr4 162659580 162659856 -21628806 - AluSq SINE Alu -30 283 9 194 91 30 0 chr4 162663464 162663497 -21625165 + (TATAA)n Simple_repeat Simple_repeat 5 38 0 1444 220 102 46 chr4 162663721 162664199 -21624463 + MLT1D LTR MaLR 1 505 0 243 0 0 0 chr4 162664375 162664402 -21624260 + (CA)n Simple_repeat Simple_repeat 2 28 0 328 368 84 0 chr4 162664557 162664664 -21623998 - MIR SINE MIR -30 232 135 1922 130 10 3 chr4 162664664 162664963 -21623699 + AluSg SINE Alu 1 301 -9 328 368 84 0 chr4 162664963 162665045 -21623617 - MIR SINE MIR -127 135 27 250 215 27 31 chr4 162665096 162665176 -21623486 - MLT1I LTR MaLR -16 574 317 1990 114 4 11 chr4 162666070 162666378 -21622284 + AluSc SINE Alu 1 306 0 29 47 0 0 chr4 162666429 162666472 -21622190 + AT_rich Low_complexity Low_complexity 1 43 0 26 30 0 0 chr4 162667028 162667061 -21621601 + AT_rich Low_complexity Low_complexity 1 33 0 249 33 0 0 chr4 162667887 162667917 -21620745 + (CA)n Simple_repeat Simple_repeat 1 30 0 184 266 43 43 chr4 162668194 162668288 -21620374 - MIR SINE MIR -133 129 36 1296 171 4 16 chr4 162668436 162668686 -21619976 - LTR29 LTR ERV1 -66 556 310 1259 163 53 53 chr4 162668686 162669020 -21619642 + THE1C LTR MaLR 1 355 0 810 146 49 7 chr4 162669231 162669375 -21619287 - LTR29 LTR ERV1 -311 311 162 2220 106 50 36 chr4 162669375 162669734 -21618928 - THE1B LTR MaLR 0 364 1 10960 99 13 14 chr4 162669734 162671294 -21617368 - THE1B-int LTR MaLR 0 1580 22 2041 179 23 45 chr4 162671394 162671726 -21616936 + L1MA7 LINE L1 5793 6113 -178 1809 170 0 0 chr4 162671726 162672032 -21616630 - AluSx SINE Alu 0 318 13 2041 179 23 45 chr4 162672032 162672183 -21616479 + L1MA7 LINE L1 6113 6266 -25 298 306 169 41 chr4 162673864 162674279 -21614383 - L2 LINE L2 -3 3310 2843 2105 120 3 7 chr4 162674351 162674652 -21614010 - AluSp SINE Alu -13 300 1 618 304 66 4 chr4 162674803 162675030 -21613632 - MIR SINE MIR 0 262 22 232 346 104 4 chr4 162675315 162675396 -21613266 - L1ME LINE L1 -243 5921 5841 362 333 92 35 chr4 162675396 162675939 -21612723 - L1ME3 LINE L1 -332 5830 5257 5020 204 53 21 chr4 162676106 162677582 -21611080 - L1MC1 LINE L1 -18 6595 5079 2687 274 82 9 chr4 162677566 162678599 -21610063 - L1MC1 LINE L1 -2659 3767 2639 * 231 36 0 0 chr4 162678599 162678627 -21610035 + (TA)n Simple_repeat Simple_repeat 2 29 0 2687 274 82 9 chr4 162678627 162678755 -21609907 - L1MC1 LINE L1 -3787 2639 2522 3055 181 9 11 chr4 162678760 162679301 -21609361 - MER50 LTR ERV1 -24 710 171 1909 133 0 14 chr4 162679306 162679600 -21609062 - AluSg SINE Alu 0 310 21 28 61 0 0 chr4 162679600 162679649 -21609013 + AT_rich Low_complexity Low_complexity 1 49 0 4299 161 50 27 chr4 162679692 162679862 -21608800 + L1MC1 LINE L1 5408 5573 -760 2241 87 0 3 chr4 162679862 162680151 -21608511 - AluY SINE Alu -13 298 11 4299 161 50 27 chr4 162680151 162680868 -21607794 + L1MC1 LINE L1 5573 6315 -18 240 339 55 12 chr4 162681034 162681288 -21607374 + L1ME LINE L1 5255 5519 -840 2243 93 3 3 chr4 162681348 162681649 -21607013 - AluY SINE Alu -8 303 3 238 274 133 9 chr4 162681701 162681814 -21606848 + L1ME LINE L1 5626 5752 -410 4393 184 36 55 chr4 162681841 162682931 -21605731 - MER11C LTR ERVK 0 1071 3 351 135 14 14 chr4 162682932 162683006 -21605656 + Tigger3(Golem) DNA MER2_type 251 324 -2705 25 0 0 0 chr4 162683006 162683031 -21605631 + AT_rich Low_complexity Low_complexity 1 25 0 1622 161 10 38 chr4 162683031 162683322 -21605340 - AluSg SINE Alu -24 286 4 524 103 9 5 chr4 162683325 162683448 -21605214 - MER50 LTR ERV1 -548 186 4 824 174 13 94 chr4 162683453 162683558 -21605104 - L1MC1 LINE L1 -3905 2521 2409 1665 177 3 25 chr4 162683558 162683874 -21604788 + AluJb SINE Alu 1 309 -3 824 174 13 94 chr4 162683874 162684067 -21604595 - L1MC1 LINE L1 -4017 2409 2246 948 182 21 11 chr4 162684068 162684255 -21604407 - AluJo SINE Alu -2 310 122 617 143 27 0 chr4 162684258 162684370 -21604292 - L1MC1 LINE L1 -4201 2225 2111 2817 170 53 37 chr4 162684384 162685038 -21603624 - L1MCa LINE L1 -4260 2167 1037 2829 16 0 0 chr4 162685038 162685356 -21603306 - AluYb8 SINE Alu 0 318 1 2817 170 53 37 chr4 162685356 162685383 -21603279 - L1MCa LINE L1 -5390 1037 1012 1213 271 131 15 chr4 162685488 162686137 -21602525 + L1MD3 LINE L1 5282 6005 -1990 * 3978 181 34 10 chr4 162685595 162686422 -21602240 + L1MA9 LINE L1 5442 6288 -24 2075 117 0 3 chr4 162686452 162686750 -21601912 - AluSg SINE Alu -13 297 1 25 51 0 0 chr4 162687633 162687672 -21600990 + AT_rich Low_complexity Low_complexity 1 39 0 2217 125 0 0 chr4 162687688 162687992 -21600670 - AluSq SINE Alu -9 304 1 274 274 45 6 chr4 162688046 162688203 -21600459 + (TA)n Simple_repeat Simple_repeat 1 163 0 22 0 0 0 chr4 162688408 162688430 -21600232 + AT_rich Low_complexity Low_complexity 1 22 0 202 305 127 59 chr4 162689340 162689458 -21599204 + L2 LINE L2 3169 3294 -19 211 351 75 37 chr4 162689458 162689592 -21599070 - MIR3 SINE MIR -26 182 44 29 28 0 0 chr4 162689637 162689673 -21598989 + AT_rich Low_complexity Low_complexity 1 36 0 6852 61 6 9 chr4 162690477 162691577 -21597085 - L1PA8 LINE L1 -8 6164 5055 3632 129 43 0 chr4 162691577 162692134 -21596528 - L1P3 LINE L1 -5828 633 53 760 161 123 0 chr4 162692134 162692289 -21596373 + AluSg/x SINE Alu 135 305 0 293 308 30 19 chr4 162692489 162692645 -21596017 - MLT1J2 LTR MaLR -256 195 51 330 345 85 19 chr4 162692908 162693166 -21595496 - LTR16C LTR ERVL -11 480 206 2814 170 10 61 chr4 162694033 162694638 -21594024 + MER4B LTR ERV1 1 574 -36 25 0 0 0 chr4 162695482 162695507 -21593155 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr4 162696283 162696318 -21592344 + AT_rich Low_complexity Low_complexity 1 35 0 225 277 18 27 chr4 162697391 162697503 -21591159 + (TATATG)n Simple_repeat Simple_repeat 2 112 0 1120 188 90 127 chr4 162697507 162697986 -21590676 + MER4C LTR ERV1 5 465 0 276 30 0 0 chr4 162697990 162698023 -21590639 + (CA)n Simple_repeat Simple_repeat 2 34 0 1387 160 70 49 chr4 162698120 162698407 -21590255 - AluJo SINE Alu -19 293 1 1036 308 98 52 chr4 162699965 162700586 -21588076 + MER69 DNA AcHobo 18 667 -1859 357 189 0 0 chr4 162700603 162700693 -21587969 + (TGGA)n Simple_repeat Simple_repeat 3 92 0 966 301 28 25 chr4 162700724 162701079 -21587583 + MER69 DNA AcHobo 715 1070 -1456 1322 280 81 8 chr4 162701244 162701737 -21586925 - L1ME LINE L1 -5513 557 29 2448 194 49 36 chr4 162702191 162702800 -21585862 + L1MC2 LINE L1 5719 6335 -9 4829 195 27 25 chr4 162703259 162704355 -21584307 - L1MC3 LINE L1 -21 7764 6667 2210 95 3 0 chr4 162704853 162705138 -21583524 - AluSc SINE Alu -23 286 1 25 51 0 0 chr4 162705703 162705742 -21582920 + AT_rich Low_complexity Low_complexity 1 39 0 1597 162 59 48 chr4 162706256 162706627 -21582035 + THE1C LTR MaLR 1 375 0 8581 153 12 44 chr4 162706629 162708260 -21580402 + THE1C-int LTR MaLR 3 1580 0 1345 156 75 99 chr4 162708260 162708644 -21580018 + THE1C LTR MaLR 1 375 0 21 36 0 0 chr4 162711076 162711104 -21577558 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr4 162711209 162711236 -21577426 + AT_rich Low_complexity Low_complexity 1 27 0 425 312 71 51 chr4 162711433 162711728 -21576934 - HAL1 LINE L1 -3 2504 2204 300 292 41 31 chr4 162712276 162712471 -21576191 - HAL1 LINE L1 -733 1774 1578 617 259 86 16 chr4 162712480 162712723 -21575939 - MIR SINE MIR -1 261 2 253 300 78 0 chr4 162712790 162712880 -21575782 + MER69 DNA AcHobo 48 144 -1082 23 33 0 0 chr4 162713267 162713297 -21575365 + AT_rich Low_complexity Low_complexity 1 30 0 180 394 40 11 chr4 162713389 162713564 -21575098 - L2 LINE L2 -787 2527 2348 1881 277 65 13 chr4 162714419 162715580 -21573082 - L1ME1 LINE L1 -65 6097 4871 228 384 73 0 chr4 162715667 162715844 -21572818 - L1MEd LINE L1 -5463 656 467 266 122 0 20 chr4 162716007 162716056 -21572606 + (TG)n Simple_repeat Simple_repeat 2 49 0 1884 144 18 0 chr4 162716411 162716711 -21571951 - AluSx SINE Alu 0 305 1 369 297 210 0 chr4 162717140 162717278 -21571384 - MER5A DNA MER1_type -11 178 12 1143 128 112 6 chr4 162717719 162717898 -21570764 - AluSg SINE Alu -112 198 1 408 234 12 72 chr4 162717948 162718115 -21570547 + L1MCc LINE L1 18 174 -6249 2215 184 80 13 chr4 162718149 162719002 -21569660 - L1M2 LINE L1 -647 5644 4728 * 5486 184 35 3 chr4 162719000 162719116 -21569546 + L1 LINE L1 3557 3668 -2478 261 0 0 0 chr4 162719116 162719145 -21569517 + (CA)n Simple_repeat Simple_repeat 2 30 0 5486 184 35 3 chr4 162719145 162720169 -21568493 + L1 LINE L1 3668 4734 -1412 370 278 166 0 chr4 162720202 162720353 -21568309 + L1MCc LINE L1 337 512 -5911 1666 288 46 50 chr4 162720571 162721658 -21567004 + L1MCc LINE L1 814 1903 -4890 25 0 0 0 chr4 162721899 162721924 -21566738 + AT_rich Low_complexity Low_complexity 1 25 0 198 244 0 0 chr4 162723352 162723393 -21565269 - MER5B DNA MER1_type -121 57 17 312 351 61 20 chr4 162724033 162724181 -21564481 - MIR3 SINE MIR 0 208 55 253 156 44 0 chr4 162724818 162724863 -21563799 - MER66A LTR ERV1 -142 336 290 3995 111 113 120 chr4 162725871 162727276 -21561386 - pTR5 LTR ERV1 0 2438 743 2106 116 0 31 chr4 162727544 162727864 -21560798 - AluSg SINE Alu 0 310 1 2295 81 10 7 chr4 162729564 162729873 -21558789 + AluSx SINE Alu 1 310 -2 1000 261 144 7 chr4 162730360 162730876 -21557786 + MLT2E LTR ERVL 8 624 -4 369 175 0 0 chr4 162731636 162731699 -21556963 - Alu SINE Alu 0 300 238 25 31 0 0 chr4 162732040 162732072 -21556590 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr4 162733165 162733193 -21555469 + AT_rich Low_complexity Low_complexity 1 28 0 1546 133 11 28 chr4 162735361 162735647 -21553015 - L1MA4A LINE L1 -8 6295 6015 2360 124 8 3 chr4 162735656 162736018 -21552644 + THE1B LTR MaLR 1 364 0 6145 131 49 63 chr4 162736018 162736519 -21552143 + THE1B-int LTR MaLR 1 508 -1072 2099 128 3 3 chr4 162736519 162736831 -21551831 + AluSx SINE Alu 1 312 0 6145 131 49 63 chr4 162736831 162737495 -21551167 + THE1B-int LTR MaLR 508 1149 -431 555 125 31 10 chr4 162737522 162737618 -21551044 + MER4A LTR ERV1 1 98 -566 529 148 7 37 chr4 162737618 162737767 -21550895 + MER4A LTR ERV1 261 463 -201 1308 134 4 71 chr4 162737772 162737952 -21550710 + MER4B LTR ERV1 388 550 -60 2439 80 0 3 chr4 162737952 162738264 -21550398 - AluY SINE Alu 0 311 1 1308 134 4 71 chr4 162738264 162738322 -21550340 + MER4B LTR ERV1 550 610 0 199 407 11 0 chr4 162738826 162738917 -21549745 - MIR SINE MIR -95 113 22 313 320 55 0 chr4 162739140 162739268 -21549394 + MIR SINE MIR 56 190 -72 27 62 0 0 chr4 162739712 162739760 -21548902 + AT_rich Low_complexity Low_complexity 1 48 0 187 344 21 0 chr4 162740299 162740392 -21548270 - MIR SINE MIR -94 168 74 712 291 96 43 chr4 162740859 162741663 -21546999 + L1MEd LINE L1 560 1285 -4846 418 366 18 4 chr4 162742335 162742562 -21546100 + L1MEd LINE L1 2183 2412 -3717 691 217 257 6 chr4 162742662 162743008 -21545654 + Charlie4a DNA MER1_type 41 473 -35 629 327 87 23 chr4 162743696 162744259 -21544403 - L2 LINE L2 -44 3269 2670 21 95 0 0 chr4 162744322 162744385 -21544277 + AT_rich Low_complexity Low_complexity 1 63 0 206 61 0 30 chr4 162744742 162744775 -21543887 + (TC)n Simple_repeat Simple_repeat 1 32 0 24 32 0 0 chr4 162744889 162744920 -21543742 + AT_rich Low_complexity Low_complexity 1 31 0 201 179 18 36 chr4 162744928 162744984 -21543678 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 319 229 26 113 chr4 162746276 162746507 -21542155 - L1M4 LINE L1 -1545 4601 4391 2522 187 65 2 chr4 162746572 162747080 -21541582 + LTR9B LTR ERV1 105 644 0 823 232 38 49 chr4 162747161 162747424 -21541238 + HUERS-P3 LTR ERV1 399 658 -6760 * 7275 179 21 31 chr4 162747402 162749622 -21539040 + HUERS-P3 LTR ERV1 764 3258 -5314 809 218 0 0 chr4 162749629 162749771 -21538891 + HUERS-P3 LTR ERV1 4539 4680 -4239 3941 151 38 5 chr4 162749774 162750429 -21538233 + HUERS-P3 LTR ERV1 4901 5577 -3342 3402 178 26 11 chr4 162750414 162751115 -21537547 + HUERS-P3 LTR ERV1 6162 6912 -2007 * 426 246 0 53 chr4 162751124 162751238 -21537424 + HUERS-P3 LTR ERV1 6845 6952 -466 * 626 243 11 16 chr4 162751229 162751430 -21537232 + HUERS-P3 LTR ERV1 2383 3936 -2453 1102 231 24 24 chr4 162751724 162752019 -21536643 + HUERS-P3 LTR ERV1 7169 8918 0 2461 180 67 10 chr4 162752019 162752585 -21536077 + LTR9B LTR ERV1 7 644 0 1266 250 57 6 chr4 162752625 162753101 -21535561 - L1M4 LINE L1 -3472 2674 2175 2849 178 56 30 chr4 162754213 162754858 -21533804 + L1MA9 LINE L1 5613 6274 -38 23 33 0 0 chr4 162754865 162754895 -21533767 + AT_rich Low_complexity Low_complexity 1 30 0 1717 180 10 14 chr4 162755142 162755436 -21533226 + AluJb SINE Alu 3 295 -17 34 42 0 0 chr4 162756410 162756458 -21532204 + AT_rich Low_complexity Low_complexity 1 48 0 531 53 40 0 chr4 162761155 162761230 -21527432 - MADE1 DNA Mariner -2 78 1 318 321 55 18 chr4 162761476 162761641 -21527021 + MIR SINE MIR 92 262 0 300 226 75 21 chr4 162761847 162761940 -21526722 + MIR SINE MIR 91 188 -74 275 318 113 26 chr4 162761978 162762173 -21526489 - MIR SINE MIR -44 218 7 299 345 25 0 chr4 162763963 162764082 -21524580 - MIR SINE MIR -93 169 48 331 327 77 6 chr4 162764904 162765072 -21523590 - L1ME2 LINE L1 -60 6104 5925 3693 160 49 8 chr4 162765075 162765811 -21522851 + L1MA4A LINE L1 5537 6302 -1 266 181 39 3 chr4 162765838 162765898 -21522764 - L1ME2 LINE L1 -232 5938 5878 377 287 13 96 chr4 162765902 162766059 -21522603 - MIR SINE MIR -101 161 18 27 73 0 0 chr4 162766142 162766197 -21522465 + AT_rich Low_complexity Low_complexity 1 55 0 186 167 0 0 chr4 162766437 162766473 -21522189 + (TA)n Simple_repeat Simple_repeat 2 37 0 2590 52 0 0 chr4 162767310 162767617 -21521045 + AluY SINE Alu 1 307 -4 794 261 5 14 chr4 162767628 162767839 -21520823 + MER106A DNA MER1_type 26 234 -2 374 75 282 0 chr4 162768365 162768453 -21520209 - MER67D LTR ERV1 -8 484 389 * 1004 211 11 77 chr4 162768450 162768711 -21519951 - MER67D LTR ERV1 -264 250 7 192 77 0 0 chr4 162769439 162769465 -21519197 + (T)n Simple_repeat Simple_repeat 1 26 0 684 311 50 0 chr4 162771150 162771391 -21517271 + MER97a DNA MER1_type? 1 253 -641 255 225 0 0 chr4 162771391 162771462 -21517200 + (TG)n Simple_repeat Simple_repeat 1 71 0 1463 221 46 53 chr4 162771465 162771900 -21516762 + MER97c DNA MER1_type? 258 689 -401 215 0 0 62 chr4 162772633 162772665 -21515997 + (TTTTTG)n Simple_repeat Simple_repeat 4 33 0 302 212 10 0 chr4 162772993 162773092 -21515570 + (TATG)n Simple_repeat Simple_repeat 4 103 0 32 57 0 0 chr4 162773218 162773271 -21515391 + AT_rich Low_complexity Low_complexity 1 53 0 881 220 63 36 chr4 162773272 162773574 -21515088 - MLT2B3 LTR ERVL -10 544 236 * 1331 161 35 0 chr4 162773567 162773797 -21514865 - THE1B LTR MaLR -126 238 1 408 306 28 21 chr4 162773801 162773945 -21514717 + L2 LINE L2 3169 3313 0 2070 130 0 13 chr4 162774024 162774325 -21514337 + AluSg SINE Alu 1 297 -13 208 269 27 101 chr4 162774508 162774532 -21514130 - MIR SINE MIR -8 254 230 1505 187 3 46 chr4 162774532 162774837 -21513825 - AluJb SINE Alu -20 292 1 208 269 27 101 chr4 162774837 162774961 -21513701 - MIR SINE MIR -32 230 117 22 0 0 0 chr4 162777207 162777229 -21511433 + AT_rich Low_complexity Low_complexity 1 22 0 2025 142 3 3 chr4 162777231 162777542 -21511120 + AluSx SINE Alu 1 311 -1 266 357 71 29 chr4 162778177 162778558 -21510104 + L1MEc LINE L1 35 431 -5965 346 274 120 72 chr4 162779216 162780003 -21508659 + L1MEc LINE L1 890 1787 -4609 198 269 23 138 chr4 162780502 162780632 -21508030 + MER5A DNA MER1_type 1 115 -74 26 50 0 0 chr4 162782114 162782154 -21506508 + AT_rich Low_complexity Low_complexity 1 40 0 557 265 89 14 chr4 162782320 162782611 -21506051 - L1MEc LINE L1 -4455 1941 1629 4659 113 3 3 chr4 162782645 162783337 -21505325 - L1PA13 LINE L1 -8 6155 5464 771 220 21 38 chr4 162783431 162783617 -21505045 + MLT1A1 LTR MaLR 4 186 -188 893 194 40 25 chr4 162783670 162783871 -21504791 + MLT1A1 LTR MaLR 162 365 0 2713 210 70 32 chr4 162783875 162784634 -21504028 + MLT1A1-int LTR MaLR 5 884 -487 270 239 0 14 chr4 162784693 162784764 -21503898 + MLT-int LTR MaLR 676 745 -990 247 234 39 39 chr4 162784752 162784829 -21503833 - MLT-int LTR MaLR -968 767 691 * 1876 151 31 52 chr4 162785220 162785645 -21503017 - L1MA8 LINE L1 -2 6289 5874 251 111 0 0 chr4 162785652 162785688 -21502974 + L1MA6 LINE L1 5610 5645 -655 2399 168 34 9 chr4 162785688 162786129 -21502533 - Tigger2 DNA MER2_type 0 2718 2267 425 176 0 0 chr4 162786113 162786181 -21502481 - Tigger2 DNA MER2_type -2649 69 2 * 1296 171 8 12 chr4 162786181 162786427 -21502235 + L1MA6 LINE L1 5644 5888 -412 2505 113 31 0 chr4 162786579 162786932 -21501730 + THE1B LTR MaLR 1 364 0 634 255 30 4 chr4 162786986 162787221 -21501441 - Charlie2a DNA MER1_type -1855 1007 767 23 0 0 0 chr4 162787401 162787424 -21501238 + AT_rich Low_complexity Low_complexity 1 23 0 292 288 0 14 chr4 162787433 162787506 -21501156 + MLT1J1 LTR MaLR 252 323 -123 199 331 152 25 chr4 162787829 162788152 -21500510 + L2 LINE L2 2895 3258 -55 28 29 0 0 chr4 162788839 162788874 -21499788 + AT_rich Low_complexity Low_complexity 1 35 0 1744 169 7 0 chr4 162789868 162790158 -21498504 - AluSx SINE Alu -20 292 1 2327 283 71 48 chr4 162790450 162791511 -21497151 - L1 LINE L1 -3085 2885 1850 261 57 0 0 chr4 162791511 162791546 -21497116 + (TG)n Simple_repeat Simple_repeat 2 36 0 2327 283 71 48 chr4 162791546 162792624 -21496038 - L1 LINE L1 -4120 1850 945 336 102 0 0 chr4 162792624 162792673 -21495989 + (TG)n Simple_repeat Simple_repeat 2 50 0 2327 283 71 48 chr4 162792673 162793637 -21495025 - L1 LINE L1 -5025 945 4 2257 237 110 15 chr4 162793752 162794685 -21493977 + Charlie5 DNA MER1_type 607 1628 -984 1702 252 85 25 chr4 162794913 162796082 -21492580 + L1MEc LINE L1 1769 3035 -3180 384 317 88 10 chr4 162796184 162796389 -21492273 + L1MEc LINE L1 3083 3303 -2912 262 299 58 26 chr4 162796403 162796557 -21492105 + L1ME2 LINE L1 5892 6050 -114 23 78 0 0 chr4 162796628 162796679 -21491983 + AT_rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr4 162797292 162797316 -21491346 + AT_rich Low_complexity Low_complexity 1 24 0 21 89 0 0 chr4 162797327 162797383 -21491279 + AT_rich Low_complexity Low_complexity 1 56 0 235 186 200 0 chr4 162797384 162797454 -21491208 - L1M4 LINE L1 -875 5271 5188 22 0 0 0 chr4 162797558 162797580 -21491082 + AT_rich Low_complexity Low_complexity 1 22 0 3534 112 10 0 chr4 162797614 162798123 -21490539 + MER75 DNA T2_type 1 514 0 1382 226 67 15 chr4 162798429 162798757 -21489905 + MER7A DNA MER2_type 1 343 -3 22 0 0 0 chr4 162799121 162799143 -21489519 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr4 162799490 162799526 -21489136 + AT_rich Low_complexity Low_complexity 1 36 0 35 83 0 0 chr4 162799624 162799708 -21488954 + AT_rich Low_complexity Low_complexity 1 84 0 2396 46 0 0 chr4 162800734 162801059 -21487603 - AluY SINE Alu 0 325 1 231 88 0 0 chr4 162801568 162801602 -21487060 + (CA)n Simple_repeat Simple_repeat 1 34 0 1368 217 15 4 chr4 162802019 162802282 -21486380 - AluJb SINE Alu -46 266 1 233 91 0 0 chr4 162803142 162803175 -21485487 + L1M1 LINE L1 3085 3117 -4448 14200 170 11 36 chr4 162803271 162805931 -21482731 - L1M1 LINE L1 -4962 2603 13 240 171 0 71 chr4 162806040 162806110 -21482552 + CT-rich Low_complexity Low_complexity 3 67 0 1182 126 116 0 chr4 162806172 162806387 -21482275 - MSTA LTR MaLR -188 240 1 351 290 8 34 chr4 162807537 162807753 -21480909 + GA-rich Low_complexity Low_complexity 1 210 0 216 254 0 0 chr4 162808238 162808293 -21480369 + GA-rich Low_complexity Low_complexity 2 56 0 2394 149 26 21 chr4 162808402 162808826 -21479836 - MSTB LTR MaLR 0 426 1 8286 202 24 3 chr4 162808826 162810439 -21478223 - MSTB-int LTR MaLR 0 1651 5 1002 158 48 0 chr4 162810445 162810610 -21478052 - MSTB LTR MaLR -2 424 252 12213 212 38 21 chr4 162810611 162812991 -21475671 - L1M1 LINE L1 -666 5816 3480 2143 113 3 3 chr4 162812991 162813292 -21475370 + AluSg SINE Alu 1 301 -9 12213 212 38 21 chr4 162813292 162816340 -21472322 - L1M1 LINE L1 -3002 3480 262 2016 131 0 10 chr4 162816340 162816637 -21472025 + AluSg SINE Alu 1 294 -16 12213 212 38 21 chr4 162816637 162816897 -21471765 - L1M1 LINE L1 -6220 262 8 21 0 0 0 chr4 162817225 162817246 -21471416 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 162817767 162817791 -21470871 + AT_rich Low_complexity Low_complexity 1 24 0 306 360 52 40 chr4 162819453 162819703 -21468959 + HERVL LTR ERVL 3370 3622 -2032 5508 116 22 2 chr4 162820112 162821142 -21467520 + L1PA13 LINE L1 5101 6152 -11 21 36 0 0 chr4 162822076 162822104 -21466558 + AT_rich Low_complexity Low_complexity 1 28 0 371 314 60 0 chr4 162823628 162823773 -21464889 + MIR SINE MIR 103 258 -4 307 299 111 48 chr4 162824146 162824417 -21464245 + L1MEd LINE L1 922 1209 -4910 21 57 0 0 chr4 162825234 162825269 -21463393 + AT_rich Low_complexity Low_complexity 1 35 0 2096 96 23 0 chr4 162825860 162826163 -21462499 + AluSq SINE Alu 1 310 -3 262 275 25 0 chr4 162826244 162826324 -21462338 + (TA)n Simple_repeat Simple_repeat 1 82 0 21 0 0 0 chr4 162826588 162826609 -21462053 + AT_rich Low_complexity Low_complexity 1 21 0 2465 210 37 9 chr4 162827523 162828318 -21460344 - L1MA9 LINE L1 -354 5829 5042 2105 197 17 6 chr4 162828326 162828798 -21459864 + L1MA9 LINE L1 5836 6312 0 1881 131 28 7 chr4 162829936 162830227 -21458435 - AluSx SINE Alu -15 297 1 556 45 0 0 chr4 162830240 162830307 -21458355 - PABL_B LTR ERV1 -600 67 1 374 78 94 0 chr4 162830307 162830371 -21458291 + L1PA13 LINE L1 6089 6158 -5 24 91 0 0 chr4 162830730 162830796 -21457866 + AT_rich Low_complexity Low_complexity 1 66 0 21 36 0 0 chr4 162831360 162831388 -21457274 + AT_rich Low_complexity Low_complexity 1 28 0 1333 176 13 67 chr4 162831852 162832164 -21456498 + AluJo SINE Alu 1 295 -17 398 364 42 38 chr4 162833364 162833494 -21455168 - HAL1 LINE L1 -897 1610 1482 2329 66 0 3 chr4 162833494 162833780 -21454882 - AluY SINE Alu -24 287 3 398 364 42 38 chr4 162833780 162833962 -21454700 - HAL1 LINE L1 -1025 1482 1297 503 265 36 18 chr4 162833972 162834138 -21454524 - MER104 DNA Tc2 -6 174 6 2355 126 65 50 chr4 162834488 162835022 -21453640 + L1MB1 LINE L1 5294 5832 -336 24671 128 11 76 chr4 162835024 162839807 -21448855 + L1PA7 LINE L1 12 4481 -1665 741 50 0 10 chr4 162839797 162839893 -21448769 - L1P LINE L1 -721 5410 5315 * 6638 77 3 1 chr4 162839893 162841557 -21447105 + L1PA7 LINE L1 4472 6148 -6 1198 155 268 3 chr4 162841563 162841852 -21446810 + L1MB1 LINE L1 5814 6174 -3 369 0 0 0 chr4 162842046 162842087 -21446575 + (CA)n Simple_repeat Simple_repeat 2 42 0 2123 119 54 23 chr4 162842743 162843096 -21445566 - THE1B LTR MaLR 0 364 1 41 48 0 0 chr4 162844440 162844502 -21444160 + AT_rich Low_complexity Low_complexity 1 62 0 21 0 0 0 chr4 162846183 162846204 -21442458 + AT_rich Low_complexity Low_complexity 1 21 0 2308 98 0 3 chr4 162846207 162846512 -21442150 + AluSc SINE Alu 3 306 -3 250 361 26 19 chr4 162846542 162846697 -21441965 - MLT1J LTR MaLR -313 198 43 310 308 124 39 chr4 162846973 162847207 -21441455 + L1M4 LINE L1 4748 5001 -1145 2013 150 0 0 chr4 162847547 162847841 -21440821 - AluSg SINE Alu -16 294 1 22 0 0 0 chr4 162848057 162848079 -21440583 + AT_rich Low_complexity Low_complexity 1 22 0 234 243 0 14 chr4 162848297 162848367 -21440295 - L1ME1 LINE L1 -1 6165 6097 442 282 69 74 chr4 162848814 162849232 -21439430 - LTR68 LTR ERV1 -320 420 5 318 339 42 54 chr4 162849361 162849529 -21439133 + L1MEc LINE L1 37 202 -6194 1466 164 91 18 chr4 162850318 162850604 -21438058 + AluSx SINE Alu 3 309 -3 544 271 97 40 chr4 162850659 162850988 -21437674 + L1ME2 LINE L1 5806 6153 -11 323 276 23 0 chr4 162852943 162853030 -21435632 - L2 LINE L2 0 3313 3225 347 295 105 68 chr4 162854866 162855589 -21433073 - HAL1 LINE L1 -20 2487 1738 243 326 11 0 chr4 162855667 162855762 -21432900 - HAL1 LINE L1 -863 1644 1549 228 254 14 0 chr4 162855919 162855990 -21432672 - HAL1 LINE L1 -1180 1327 1256 22 56 0 0 chr4 162856004 162856040 -21432622 + AT_rich Low_complexity Low_complexity 1 36 0 6523 209 114 36 chr4 162856086 162857712 -21430950 + MER52A LTR ERV1 1 1754 -1 302 316 15 15 chr4 162857958 162858091 -21430571 - HAL1 LINE L1 -1618 889 757 244 324 81 9 chr4 162858711 162858822 -21429840 - HAL1 LINE L1 -2388 119 1 209 222 0 0 chr4 162858897 162858942 -21429720 + A-rich Low_complexity Low_complexity 3 47 0 324 120 0 0 chr4 162859932 162859982 -21428680 + (CACG)n Simple_repeat Simple_repeat 2 51 0 1520 52 0 0 chr4 162860000 162860191 -21428471 + L1PA5 LINE L1 5964 6154 0 201 94 0 0 chr4 162861227 162861259 -21427403 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 676 294 86 48 chr4 162861445 162862078 -21426584 + L1ME LINE L1 622 1261 -4863 230 56 28 0 chr4 162862682 162862718 -21425944 + (TA)n Simple_repeat Simple_repeat 2 38 0 325 299 49 21 chr4 162862718 162862862 -21425800 - L1MC4 LINE L1 -1340 6702 6555 269 345 61 77 chr4 162863018 162863525 -21425137 + MLT1J LTR MaLR 3 501 -10 269 225 176 14 chr4 162863552 162863694 -21424968 - L1MA10 LINE L1 -1 6333 6169 694 287 19 2 chr4 162863765 162864100 -21424562 - L1ME LINE L1 -595 5571 4799 24 0 0 0 chr4 162864589 162864613 -21424049 + AT_rich Low_complexity Low_complexity 1 24 0 190 375 29 10 chr4 162864837 162864941 -21423721 + MIR SINE MIR 25 130 -78 3425 254 123 40 chr4 162865703 162865752 -21422910 + L1MCb LINE L1 1 45 -6519 1911 141 185 6 chr4 162865752 162866115 -21422547 - MSTA LTR MaLR 0 428 1 3425 254 123 40 chr4 162866115 162868908 -21419754 + L1MCb LINE L1 45 3074 -3490 1824 260 21 49 chr4 162868905 162869123 -21419539 + L1MCb LINE L1 3629 3852 -2712 * 2238 98 0 10 chr4 162869123 162869429 -21419233 + AluSc SINE Alu 4 306 -3 1824 260 21 49 chr4 162869429 162869485 -21419177 + L1MCb LINE L1 3852 3908 -2656 2615 224 35 31 chr4 162869485 162869513 -21419149 + MER76 LTR ERV 3 29 -659 267 114 0 0 chr4 162869513 162869557 -21419105 + (CAA)n Simple_repeat Simple_repeat 2 45 0 2615 224 35 31 chr4 162869557 162870211 -21418451 + MER76 LTR ERV 29 688 0 1824 260 21 49 chr4 162870211 162870708 -21417954 + L1MCb LINE L1 3908 4379 -2185 730 277 76 18 chr4 162870715 162871058 -21417604 + L1MCb LINE L1 4714 5076 -1488 306 245 75 0 chr4 162871111 162871205 -21417457 + MIR SINE MIR 2 102 -160 1780 171 50 14 chr4 162871391 162871753 -21416909 + THE1C LTR MaLR 1 375 0 274 189 68 54 chr4 162872546 162872620 -21416042 + MLT1I LTR MaLR 335 409 0 267 339 0 0 chr4 162872646 162872764 -21415898 + (TATATG)n Simple_repeat Simple_repeat 3 120 0 303 337 52 26 chr4 162872764 162872957 -21415705 - L2 LINE L2 -1613 1701 1504 21 0 0 0 chr4 162874501 162874522 -21414140 + AT_rich Low_complexity Low_complexity 1 21 0 1790 110 12 80 chr4 162875019 162875345 -21413317 + AluSc SINE Alu 1 304 -5 237 159 0 0 chr4 162875404 162875448 -21413214 + T-rich Low_complexity Low_complexity 1 44 0 1254 105 18 6 chr4 162875450 162875621 -21413041 - AluSx SINE Alu -139 173 1 23 33 0 0 chr4 162875777 162875807 -21412855 + AT_rich Low_complexity Low_complexity 1 30 0 465 295 87 52 chr4 162876036 162876578 -21412084 - L1M4 LINE L1 -1179 4967 4407 525 299 58 8 chr4 162877102 162877363 -21411299 - L1M4 LINE L1 -2399 3747 3474 578 199 7 37 chr4 162877365 162877501 -21411161 + AluSq/x SINE Alu 3 134 -179 341 253 135 66 chr4 162877519 162878038 -21410624 - L1M4 LINE L1 -2659 3487 2944 370 309 67 16 chr4 162878099 162878293 -21410369 - L1ME3 LINE L1 -66 6096 5893 23 54 0 0 chr4 162878531 162878568 -21410094 + AT_rich Low_complexity Low_complexity 1 37 0 230 264 0 95 chr4 162879517 162879665 -21408997 - MER94 DNA DNA 0 134 1 1966 114 4 0 chr4 162880930 162881201 -21407461 - AluSg SINE Alu -38 272 1 311 270 94 31 chr4 162881490 162881649 -21407013 - L1MCc LINE L1 -5517 906 738 2054 148 0 0 chr4 162881739 162882049 -21406613 + AluSx SINE Alu 1 310 -2 504 314 57 43 chr4 162882692 162883042 -21405620 - L2 LINE L2 -3 3310 2956 27 29 0 0 chr4 162883086 162883120 -21405542 + AT_rich Low_complexity Low_complexity 1 34 0 5212 152 36 7 chr4 162883184 162884046 -21404616 - L1PB4 LINE L1 -4 6152 5259 2413 70 0 7 chr4 162884046 162884347 -21404315 - AluY SINE Alu -12 299 1 5212 152 36 7 chr4 162884347 162884545 -21404117 - L1PB4 LINE L1 -897 5259 5068 549 249 102 23 chr4 162884584 162884761 -21403901 - MIR SINE MIR -70 192 2 189 0 0 0 chr4 162885242 162885263 -21403399 + (TTCC)n Simple_repeat Simple_repeat 4 24 0 207 0 0 0 chr4 162885274 162885297 -21403365 + (T)n Simple_repeat Simple_repeat 1 23 0 18197 34 2 0 chr4 162886398 162889364 -21399298 - L1PA3 LINE L1 -3 6152 3174 274 208 68 64 chr4 162889423 162889592 -21399070 - MLT1H LTR MaLR -3 651 428 1198 290 16 3 chr4 162889745 162890066 -21398596 - MLT1H LTR MaLR -213 336 12 30 0 0 0 chr4 162891462 162891492 -21397170 + AT_rich Low_complexity Low_complexity 1 30 0 606 54 11 21 chr4 162892580 162892673 -21395989 - L1PA8 LINE L1 -1 6171 6080 510 335 44 0 chr4 162893710 162893916 -21394746 - MIR SINE MIR -36 226 12 180 111 0 0 chr4 162894205 162894232 -21394430 + (TTA)n Simple_repeat Simple_repeat 2 28 0 222 37 0 0 chr4 162894371 162894398 -21394264 + (TTA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr4 162894622 162894643 -21394019 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 162895319 162895348 -21393314 + AT_rich Low_complexity Low_complexity 1 29 0 21 82 0 0 chr4 162895433 162895482 -21393180 + AT_rich Low_complexity Low_complexity 1 49 0 31 44 0 0 chr4 162895903 162895948 -21392714 + AT_rich Low_complexity Low_complexity 1 45 0 26 0 0 0 chr4 162896132 162896158 -21392504 + AT_rich Low_complexity Low_complexity 1 26 0 24 53 0 0 chr4 162896439 162896477 -21392185 + AT_rich Low_complexity Low_complexity 1 38 0 23 54 0 0 chr4 162897562 162897599 -21391063 + AT_rich Low_complexity Low_complexity 1 37 0 1729 239 45 26 chr4 162897756 162898284 -21390378 - L1ME2 LINE L1 -175 5989 5452 474 266 69 18 chr4 162898734 162898952 -21389710 + L1M4 LINE L1 2512 2740 -3406 1562 297 98 20 chr4 162898970 162900138 -21388524 + L1M4 LINE L1 2870 4128 -2018 25 0 0 0 chr4 162900192 162900217 -21388445 + AT_rich Low_complexity Low_complexity 1 25 0 188 353 0 0 chr4 162904221 162904272 -21384390 - MIR SINE MIR -17 245 195 657 171 116 0 chr4 162905833 162905962 -21382700 + Tigger3(Golem) DNA MER2_type 91 234 -2795 1286 276 51 33 chr4 162905997 162906446 -21382216 - MER119 DNA MER1_type -121 462 6 38 61 0 0 chr4 162906552 162906618 -21382044 + AT_rich Low_complexity Low_complexity 1 66 0 284 215 203 0 chr4 162906924 162907003 -21381659 - MIR SINE MIR -3 259 165 215 326 12 0 chr4 162907067 162907153 -21381509 - MIR SINE MIR -1 261 175 6122 164 41 14 chr4 162907156 162907845 -21380817 + Tigger3b DNA MER2_type 1 737 -2291 2179 111 3 3 chr4 162907845 162908151 -21380511 + AluSx SINE Alu 1 306 -6 6122 164 41 14 chr4 162908151 162908660 -21380002 + Tigger3b DNA MER2_type 737 1231 0 181 277 62 15 chr4 162908663 162908728 -21379934 - MIR SINE MIR -130 132 65 354 221 0 0 chr4 162908749 162908874 -21379788 + GA-rich Low_complexity Low_complexity 1 125 0 206 259 98 71 chr4 162909113 162909225 -21379437 - MIR SINE MIR -28 234 120 296 338 156 34 chr4 162909471 162909856 -21378806 - L3b LINE CR1 -9 1574 1143 225 0 0 0 chr4 162909975 162910000 -21378662 + (TC)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr4 162911183 162911205 -21377457 + AT_rich Low_complexity Low_complexity 1 22 0 307 272 12 3 chr4 162911217 162911348 -21377314 + L1MDa LINE L1 1328 1461 -5079 6880 41 0 0 chr4 162911599 162912435 -21376227 + L1PA5 LINE L1 5318 6153 -1 584 303 5 28 chr4 162912494 162912705 -21375957 - MER58A DNA MER1_type 0 224 19 511 262 41 23 chr4 162912750 162912922 -21375740 - L2 LINE L2 -919 2395 2221 2918 345 123 12 chr4 162913499 162915286 -21373376 - L2 LINE L2 -1122 2192 209 1692 135 52 11 chr4 162915321 162915619 -21373043 + AluSx SINE Alu 7 315 0 1127 136 11 0 chr4 162915619 162915795 -21372867 + AluSq SINE Alu 126 303 -10 1127 255 75 53 chr4 162915795 162916271 -21372391 + L1ME3A LINE L1 5472 5962 -208 239 221 18 88 chr4 162916331 162916451 -21372211 + L1ME3A LINE L1 5967 6078 -84 324 299 103 0 chr4 162916755 162916842 -21371820 - L2 LINE L2 0 3272 3177 211 150 25 0 chr4 162917173 162917213 -21371449 + T-rich Low_complexity Low_complexity 1 41 0 1722 140 4 0 chr4 162917248 162917505 -21371157 - AluSx SINE Alu -54 258 1 193 304 5 14 chr4 162917507 162917607 -21371055 - MIR SINE MIR -65 143 45 27 29 0 0 chr4 162918358 162918392 -21370270 + AT_rich Low_complexity Low_complexity 1 34 0 1780 168 150 11 chr4 162918994 162919368 -21369294 + MSTB LTR MaLR 1 426 0 511 239 75 0 chr4 162919428 162919562 -21369100 - MIR SINE MIR -33 229 86 960 120 0 0 chr4 162919649 162919799 -21368863 + (TA)n Simple_repeat Simple_repeat 1 150 0 252 0 0 0 chr4 162919798 162919826 -21368836 + (GA)n Simple_repeat Simple_repeat 2 29 0 * 408 246 152 35 chr4 162919991 162920162 -21368500 - MIR SINE MIR -67 195 5 1992 189 37 24 chr4 162921308 162921802 -21366860 + MLT2A2 LTR ERVL 1 487 -67 414 0 0 0 chr4 162921802 162921848 -21366814 + (TA)n Simple_repeat Simple_repeat 2 47 0 4834 112 3 7 chr4 162921853 162922547 -21366115 - LTR8 LTR ERV1 0 691 1 1992 189 37 24 chr4 162922547 162922586 -21366076 + MLT2A2 LTR ERVL 490 554 0 9630 129 37 24 chr4 162922589 162924135 -21364527 + THE1C-int LTR MaLR 5 1570 -10 1771 129 144 0 chr4 162924160 162924486 -21364176 + THE1C LTR MaLR 1 373 -2 21 57 0 0 chr4 162927101 162927136 -21361526 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 162927175 162927196 -21361466 + AT_rich Low_complexity Low_complexity 1 21 0 1772 165 47 56 chr4 162927647 162928095 -21360567 - L1MC2 LINE L1 -5 6339 5896 6573 122 27 19 chr4 162928497 162929559 -21359103 + MER11C LTR ERVK 1 1071 0 11920 188 26 62 chr4 162930332 162932087 -21356575 - L1MA4 LINE L1 0 7719 5902 3021 151 71 35 chr4 162932087 162932678 -21355984 + LTR9 LTR ERV1 1 612 0 11920 188 26 62 chr4 162932678 162933953 -21354709 - L1MA4 LINE L1 -1817 5902 4582 2140 141 120 5 chr4 162933953 162934337 -21354325 + MSTA LTR MaLR 1 428 0 11920 188 26 62 chr4 162934337 162935165 -21353497 - L1MA4 LINE L1 -3137 4582 3999 309 208 28 28 chr4 162935165 162935237 -21353425 - MSTA LTR MaLR -178 250 179 11920 188 26 62 chr4 162935237 162936056 -21352606 - L1MA4 LINE L1 -3720 3999 3152 1618 216 24 3 chr4 162936052 162936386 -21352276 - L1MA4 LINE L1 -4987 1578 1238 * 258 353 52 0 chr4 162938843 162938959 -21349703 - L2 LINE L2 0 3313 3192 8073 169 11 9 chr4 162939625 162941012 -21347650 + Tigger1 DNA MER2_type 1 1389 -1029 28099 28 6 1 chr4 162941012 162945185 -21343477 - L1PA3 LINE L1 0 6155 1965 2414 151 8 0 chr4 162945185 162945575 -21343087 + Tigger1 DNA MER2_type 1385 1777 -641 2323 85 0 19 chr4 162947178 162947494 -21341168 - AluY SINE Alu 0 311 2 486 290 57 16 chr4 162948008 162948254 -21340408 + Charlie5 DNA MER1_type 22 277 -2335 540 157 88 29 chr4 162948254 162948356 -21340306 + Tigger3(Golem) DNA MER2_type 1 108 -2921 * 970 166 60 42 chr4 162948353 162948592 -21340070 + Tigger3(Golem) DNA MER2_type 2282 2528 -501 1753 156 17 0 chr4 162948592 162948893 -21339769 + AluSq SINE Alu 6 311 -2 970 166 60 42 chr4 162948893 162948937 -21339725 + Tigger3(Golem) DNA MER2_type 2528 2570 -459 1858 94 0 4 chr4 162948946 162949200 -21339462 + AluY SINE Alu 1 253 -58 34 24 0 0 chr4 162949376 162949417 -21339245 + AT_rich Low_complexity Low_complexity 1 41 0 38 85 0 0 chr4 162949895 162949989 -21338673 + AT_rich Low_complexity Low_complexity 1 94 0 22 0 0 0 chr4 162950035 162950057 -21338605 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 162950202 162950232 -21338430 + AT_rich Low_complexity Low_complexity 1 30 0 396 0 0 0 chr4 163150429 163150473 -21138189 + (CA)n Simple_repeat Simple_repeat 2 45 0 30 45 0 0 chr4 163152046 163152090 -21136572 + AT_rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr4 163152151 163152179 -21136483 + AT_rich Low_complexity Low_complexity 1 28 0 418 337 130 37 chr4 163152818 163153195 -21135467 + L2 LINE L2 2893 3304 -9 310 268 129 110 chr4 163154428 163154745 -21133917 - L2 LINE L2 -9 3263 2941 358 253 24 84 chr4 163155253 163155419 -21133243 + MER63 DNA MER1_type 3 784 -278 28 0 0 0 chr4 163156035 163156063 -21132599 + AT_rich Low_complexity Low_complexity 1 28 0 1441 213 63 2 chr4 163156225 163156671 -21131991 - Charlie5 DNA MER1_type 0 2624 2152 2638 213 69 12 chr4 163156673 163157503 -21131159 - MER3 DNA MER1_type 0 1406 530 458 213 50 21 chr4 163157565 163157706 -21130956 - MER3 DNA MER1_type 0 280 136 315 0 0 0 chr4 163157751 163157786 -21130876 + (TA)n Simple_repeat Simple_repeat 2 36 0 1522 216 136 48 chr4 163157902 163158379 -21130283 - MLT2B3 LTR ERVL -35 519 1 491 190 9 35 chr4 163158395 163158511 -21130151 - MER3 DNA MER1_type -59 150 38 28 0 0 0 chr4 163158991 163159019 -21129643 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 163160567 163160588 -21128074 + AT_rich Low_complexity Low_complexity 1 21 0 234 369 70 22 chr4 163160630 163160992 -21127670 + L2 LINE L2 2646 3008 -264 267 309 137 23 chr4 163161009 163161184 -21127478 + L2 LINE L2 3118 3312 -1 245 237 8 23 chr4 163164040 163164171 -21124491 + (TA)n Simple_repeat Simple_repeat 1 129 0 285 156 0 0 chr4 163164185 163164230 -21124432 - MSTA LTR MaLR 0 428 384 2333 84 0 10 chr4 163164231 163164539 -21124123 + AluY SINE Alu 6 310 -1 4066 121 18 0 chr4 163164553 163165181 -21123481 - L1PA10 LINE L1 -1166 4980 4342 6356 98 10 1 chr4 163165188 163166356 -21122306 + L1PA10 LINE L1 4976 6157 -11 663 78 0 0 chr4 163166358 163166448 -21122214 + (TA)n Simple_repeat Simple_repeat 2 91 0 2137 154 33 26 chr4 163166450 163166840 -21121822 - MSTA LTR MaLR -35 393 1 32 26 0 0 chr4 163166938 163166977 -21121685 + AT_rich Low_complexity Low_complexity 1 39 0 257 298 45 58 chr4 163167091 163167333 -21121329 - L1ME LINE L1 -216 5905 5667 30 0 0 0 chr4 163167637 163167667 -21120995 + AT_rich Low_complexity Low_complexity 1 30 0 33 66 0 0 chr4 163167784 163167845 -21120817 + AT_rich Low_complexity Low_complexity 1 61 0 204 183 0 33 chr4 163167936 163167996 -21120666 + (TA)n Simple_repeat Simple_repeat 1 58 0 604 204 14 75 chr4 163168018 163168165 -21120497 - AluJo SINE Alu -54 258 121 25 65 0 0 chr4 163168363 163168409 -21120253 + AT_rich Low_complexity Low_complexity 1 46 0 5675 108 17 19 chr4 163168415 163169016 -21119646 + HERVL LTR ERVL 1121 1722 -3932 2206 95 0 3 chr4 163169016 163169331 -21119331 + AluSq SINE Alu 3 316 0 5675 108 17 19 chr4 163169331 163169552 -21119110 + HERVL LTR ERVL 1722 1942 -3712 430 130 0 0 chr4 163169552 163169621 -21119041 + MLT2A2 LTR ERVL 378 446 -7 4637 218 58 73 chr4 163169627 163171425 -21117237 - L1 LINE L1 -2164 4568 2799 1419 164 144 25 chr4 163171438 163171840 -21116822 - LTR7 LTR ERV1 0 450 1 1346 101 13 31 chr4 163171840 163172068 -21116594 - HERVH LTR ERV1 0 7713 7490 980 155 6 0 chr4 163172058 163172219 -21116443 + HERVH LTR ERV1 6787 6948 -765 * 296 125 0 78 chr4 163172205 163172269 -21116393 + HERVH LTR ERV1 7655 7713 0 * 3491 119 7 4 chr4 163172270 163172809 -21115853 + HERVH LTR ERV1 7173 7713 0 1727 166 120 20 chr4 163172809 163173218 -21115444 + LTR7 LTR ERV1 1 450 0 8503 271 65 16 chr4 163173226 163176518 -21112144 - L1 LINE L1 -3931 2801 3 684 235 60 40 chr4 163176529 163176780 -21111882 - L1MC4a LINE L1 -376 7432 7177 * 1314 244 57 18 chr4 163176777 163177166 -21111496 - L1MC4a LINE L1 -1920 5888 5485 3435 69 0 7 chr4 163178904 163179355 -21109307 + LTR7 LTR ERV1 1 448 -2 20377 84 54 49 chr4 163179357 163182631 -21106031 + HERVH LTR ERV1 1 3290 -4423 3326 109 6 8 chr4 163182621 163183124 -21105538 + HERVH LTR ERV1 3492 3993 -3720 * 4423 137 1 5 chr4 163183126 163183797 -21104865 + HERVH LTR ERV1 4488 5156 -2557 1292 162 19 0 chr4 163183789 163184005 -21104657 + HERVH LTR ERV1 5600 5819 -1894 * 2562 71 45 13 chr4 163184003 163184383 -21104279 + HERVH LTR ERV1 7322 7713 0 3436 62 0 7 chr4 163184383 163184834 -21103828 + LTR7 LTR ERV1 1 448 -2 198 0 0 0 chr4 163184992 163185014 -21103648 + (TTA)n Simple_repeat Simple_repeat 1 22 0 1049 196 0 49 chr4 163185017 163185221 -21103441 - AluJo SINE Alu -33 279 86 2323 96 0 6 chr4 163185377 163185689 -21102973 + AluY SINE Alu 1 310 -1 180 0 0 0 chr4 163186182 163186202 -21102460 + (TG)n Simple_repeat Simple_repeat 1 20 0 5223 121 8 4 chr4 163187997 163188780 -21099882 - L1PA10 LINE L1 -11 6157 5372 2902 156 4 0 chr4 163188779 163189274 -21099388 + L1P LINE L1 4252 4748 -1398 * 2105 109 3 3 chr4 163189309 163189603 -21099059 + AluSc SINE Alu 1 294 -15 1420 205 101 12 chr4 163189730 163190125 -21098537 - MSTB LTR MaLR 0 426 1 2408 80 3 3 chr4 163191324 163191637 -21097025 + AluSq SINE Alu 1 313 0 779 232 59 28 chr4 163192005 163192259 -21096403 - MIR SINE MIR 0 262 1 285 349 23 15 chr4 163192331 163192463 -21096199 - MIR SINE MIR -87 175 43 308 284 58 25 chr4 163192751 163192874 -21095788 - MLT1I LTR MaLR -260 149 24 394 256 136 8 chr4 163193148 163193273 -21095389 - MIR SINE MIR 0 262 122 233 358 52 15 chr4 163193403 163193537 -21095125 - MIR SINE MIR -10 252 114 189 0 0 0 chr4 163195562 163195583 -21093079 + (CA)n Simple_repeat Simple_repeat 2 22 0 26 0 0 0 chr4 163197307 163197333 -21091329 + AT_rich Low_complexity Low_complexity 1 26 0 358 164 10 10 chr4 163197711 163197815 -21090847 + (CAT)n Simple_repeat Simple_repeat 1 104 0 1771 243 37 25 chr4 163198203 163198693 -21089969 + MLT1D LTR MaLR 8 503 -2 228 67 0 0 chr4 163199480 163199510 -21089152 + (TG)n Simple_repeat Simple_repeat 2 31 0 246 32 0 0 chr4 163201004 163201035 -21087627 + (TG)n Simple_repeat Simple_repeat 2 32 0 257 0 30 0 chr4 163201191 163201224 -21087438 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 6535 29 0 0 chr4 163201248 163202011 -21086651 - L1PA3 LINE L1 0 6155 5393 216 0 0 0 chr4 163202011 163202035 -21086627 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1913 165 0 0 chr4 163202035 163202320 -21086342 - AluSx SINE Alu -27 285 1 25 0 0 0 chr4 163202526 163202551 -21086111 + AT_rich Low_complexity Low_complexity 1 25 0 402 21 0 0 chr4 163203273 163203320 -21085342 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1938 138 0 0 chr4 163203322 163203605 -21085057 - AluSx SINE Alu -29 283 1 924 192 43 43 chr4 163203938 163204193 -21084469 + L1MD3 LINE L1 7741 7995 0 490 15 30 0 chr4 163205004 163205071 -21083591 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 394 216 0 14 chr4 163205652 163205726 -21082936 - MER2 DNA MER2_type -6 339 267 * 778 221 13 0 chr4 163205723 163205872 -21082790 - MER2 DNA MER2_type -194 151 1 28 29 0 0 chr4 163206069 163206104 -21082558 + AT_rich Low_complexity Low_complexity 1 35 0 39443 79 4 6 chr4 163206271 163212429 -21076233 + L1PA5 LINE L1 11 6154 0 23 0 0 0 chr4 163212429 163212452 -21076210 + AT_rich Low_complexity Low_complexity 1 23 0 23 68 0 0 chr4 163212920 163212964 -21075698 + AT_rich Low_complexity Low_complexity 1 44 0 27 49 0 0 chr4 163213268 163213309 -21075353 + AT_rich Low_complexity Low_complexity 1 41 0 252 322 69 11 chr4 163213724 163213811 -21074851 + MER91C DNA MER1_type 14 105 -35 1431 180 51 30 chr4 163214807 163215102 -21073560 - AluJb SINE Alu -11 301 1 225 94 0 0 chr4 163215322 163215354 -21073308 + (TA)n Simple_repeat Simple_repeat 1 32 0 * 369 0 0 0 chr4 163215353 163215394 -21073268 + (CA)n Simple_repeat Simple_repeat 2 42 0 28 0 0 0 chr4 163215971 163215999 -21072663 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr4 163216068 163216093 -21072569 + AT_rich Low_complexity Low_complexity 1 25 0 187 209 23 0 chr4 163217670 163217713 -21070949 + MIR SINE MIR 144 187 -75 27 0 0 0 chr4 163217764 163217791 -21070871 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr4 163217883 163217906 -21070756 + AT_rich Low_complexity Low_complexity 1 23 0 42631 29 21 2 chr4 163218675 163224688 -21063974 + L1HS LINE L1 22 6155 0 2133 269 34 46 chr4 163225489 163226573 -21062089 + L1MEc LINE L1 1019 2089 -4307 693 314 105 42 chr4 163226582 163226916 -21061746 - MLT1E2 LTR MaLR 0 626 272 41115 65 2 0 chr4 163226977 163233104 -21055558 - L1PA5 LINE L1 -7 6147 11 788 167 45 80 chr4 163233109 163233307 -21055355 - MLT1E2 LTR MaLR -410 214 3 703 243 88 35 chr4 163233321 163233663 -21054999 + L1MEc LINE L1 2114 2473 -3923 193 148 46 37 chr4 163233760 163233868 -21054794 + (TTATA)n Simple_repeat Simple_repeat 5 113 0 182 311 122 0 chr4 163234174 163234264 -21054398 - MIR3 SINE MIR -43 165 65 23 54 0 0 chr4 163235356 163235393 -21053269 + AT_rich Low_complexity Low_complexity 1 37 0 1552 194 19 19 chr4 163235561 163235871 -21052791 - AluJb SINE Alu -2 310 1 367 183 183 61 chr4 163237707 163237822 -21050840 - MLT1E3 LTR MaLR -495 129 1 495 350 52 0 chr4 163237825 163238092 -21050570 - L2 LINE L2 -271 3042 2763 995 311 75 43 chr4 163238123 163238640 -21050022 - L2 LINE L2 -847 2467 1934 2104 122 0 0 chr4 163238912 163239238 -21049424 + AluSc SINE Alu 1 326 0 968 211 174 12 chr4 163240275 163240522 -21048140 + AluJo SINE Alu 2 288 -14 309 321 204 0 chr4 163240549 163240686 -21047976 + MIR SINE MIR 32 196 -66 183 245 106 43 chr4 163240689 163240783 -21047879 - MER5C DNA MER1_type -224 100 1 1668 295 89 32 chr4 163241430 163242807 -21045855 + L1ME LINE L1 6 1461 -4619 631 355 52 7 chr4 163242821 163243246 -21045416 + L1MCc LINE L1 25 468 -5955 1425 290 106 30 chr4 163243468 163244654 -21044008 + L1MCc LINE L1 822 2126 -4815 180 0 0 0 chr4 163244654 163244674 -21043988 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 1425 290 106 30 chr4 163244674 163244737 -21043925 + L1MCc LINE L1 2126 2183 -4758 1206 163 28 46 chr4 163244737 163245020 -21043642 - L1MA4 LINE L1 -1 6299 6022 983 261 98 17 chr4 163245022 163245439 -21043223 + L1MCc LINE L1 3189 3639 -3302 2011 138 0 0 chr4 163245860 163246150 -21042512 + AluSx SINE Alu 5 294 -18 22 0 0 0 chr4 163247211 163247233 -21041429 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 163247799 163247820 -21040842 + AT_rich Low_complexity Low_complexity 1 21 0 267 350 19 0 chr4 163247907 163248010 -21040652 - L3 LINE CR1 -364 1213 1109 878 313 67 8 chr4 163248667 163249025 -21039637 - L2 LINE L2 -1 3312 2934 25 75 0 0 chr4 163250301 163250354 -21038308 + AT_rich Low_complexity Low_complexity 1 53 0 264 204 134 13 chr4 163250462 163250619 -21038043 + MER31-int LTR ERV1 1310 1485 -3451 1938 128 4 4 chr4 163250679 163250960 -21037702 + AluSx SINE Alu 1 281 -31 219 36 0 0 chr4 163250963 163250991 -21037671 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 403 227 73 82 chr4 163251079 163251299 -21037363 + MER31-int LTR ERV1 1698 1915 -3021 22 56 0 0 chr4 163251344 163251380 -21037282 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr4 163251448 163251476 -21037186 + AT_rich Low_complexity Low_complexity 1 28 0 2161 108 3 0 chr4 163251928 163252224 -21036438 + AluSp SINE Alu 2 298 -15 547 350 7 29 chr4 163252459 163252736 -21035926 + L1MC/D LINE L1 5388 5658 -2150 605 261 64 79 chr4 163252873 163253203 -21035459 - L2 LINE L2 -1 3312 2988 22 80 0 0 chr4 163254309 163254359 -21034303 + AT_rich Low_complexity Low_complexity 1 50 0 214 183 33 17 chr4 163256003 163256063 -21032599 + (TTATA)n Simple_repeat Simple_repeat 1 61 0 1564 99 31 0 chr4 163256125 163256347 -21032315 + MER30 DNA MER1_type 2 230 0 531 275 83 31 chr4 163256349 163256830 -21031832 + HAL1 LINE L1 1313 1860 -647 216 0 0 0 chr4 163256990 163257014 -21031648 + (A)n Simple_repeat Simple_repeat 1 24 0 24 0 0 0 chr4 163257329 163257353 -21031309 + AT_rich Low_complexity Low_complexity 1 24 0 2352 90 3 0 chr4 163257411 163257721 -21030941 - AluSq SINE Alu -2 311 1 21 36 0 0 chr4 163258264 163258292 -21030370 + AT_rich Low_complexity Low_complexity 1 28 0 45 75 0 0 chr4 163258404 163258498 -21030164 + AT_rich Low_complexity Low_complexity 1 94 0 1616 200 31 28 chr4 163258645 163259000 -21029662 + MLT1A1 LTR MaLR 10 365 0 24 0 0 0 chr4 163259967 163259991 -21028671 + AT_rich Low_complexity Low_complexity 1 24 0 437 91 0 0 chr4 163260009 163260075 -21028587 - Alu SINE Alu -5 306 241 16938 135 35 26 chr4 163260699 163262679 -21025983 + Tigger3(Golem) DNA MER2_type 1 2016 -1013 2533 55 0 3 chr4 163262679 163262986 -21025676 + AluY SINE Alu 1 306 -5 16938 135 35 26 chr4 163262986 163263952 -21024710 + Tigger3(Golem) DNA MER2_type 2016 2972 -57 22 35 0 0 chr4 163264486 163264515 -21024147 + AT_rich Low_complexity Low_complexity 1 29 0 1293 209 54 22 chr4 163265169 163265485 -21023177 - MLT1A1 LTR MaLR -39 326 1 784 182 79 8 chr4 163266955 163267262 -21021400 - MLT1B LTR MaLR -12 378 1 23 54 0 0 chr4 163269322 163269359 -21019303 + AT_rich Low_complexity Low_complexity 1 37 0 1385 159 113 23 chr4 163269572 163269881 -21018781 - MER44D DNA MER2_type -1 608 2 234 116 0 0 chr4 163270955 163270998 -21017664 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1176 201 136 34 chr4 163271061 163271226 -21017436 + MLT1B LTR MaLR 1 148 -242 225 0 0 0 chr4 163271226 163271251 -21017411 + (TC)n Simple_repeat Simple_repeat 2 26 0 1176 201 136 34 chr4 163271251 163271439 -21017223 + MLT1B LTR MaLR 148 390 0 244 211 18 0 chr4 163271974 163272031 -21016631 + CT-rich Low_complexity Low_complexity 3 60 0 1576 250 159 24 chr4 163272489 163273029 -21015633 + MER90 LTR ERV1 2 614 0 344 297 121 31 chr4 163273224 163273645 -21015017 - L1M4 LINE L1 -2115 4031 3573 22 0 0 0 chr4 163273819 163273841 -21014821 + AT_rich Low_complexity Low_complexity 1 22 0 757 262 36 22 chr4 163273937 163274349 -21014313 - L1M4 LINE L1 -2944 3202 2785 245 282 94 12 chr4 163274390 163274475 -21014187 - L2 LINE L2 -1345 1969 1878 21 0 0 0 chr4 163275531 163275552 -21013110 + AT_rich Low_complexity Low_complexity 1 21 0 209 211 0 0 chr4 163275580 163275618 -21013044 + (CATA)n Simple_repeat Simple_repeat 1 38 0 22 35 0 0 chr4 163275911 163275940 -21012722 + AT_rich Low_complexity Low_complexity 1 29 0 23 97 0 0 chr4 163276388 163276460 -21012202 + AT_rich Low_complexity Low_complexity 1 72 0 1612 123 3 167 chr4 163276467 163276856 -21011806 + HSMAR2 DNA Mariner 2 326 -976 2538 118 24 26 chr4 163276860 163277063 -21011599 + HSMAR2 DNA Mariner 888 1090 -212 2072 202 20 78 chr4 163277063 163277651 -21011011 + MLT2B3 LTR ERVL 1 554 0 2538 118 24 26 chr4 163277651 163277863 -21010799 + HSMAR2 DNA Mariner 1090 1302 0 1400 171 64 11 chr4 163278299 163278580 -21010082 + AluJo SINE Alu 11 306 -6 294 286 102 10 chr4 163278611 163278709 -21009953 - MIR SINE MIR -88 174 68 1443 227 56 60 chr4 163279745 163280265 -21008397 - LTR40a LTR ERVL 0 519 2 330 310 41 29 chr4 163280669 163280840 -21007822 - MIR SINE MIR -12 250 78 810 211 0 0 chr4 163280882 163281034 -21007628 - L1MA5 LINE L1 -366 5934 5783 2192 228 55 45 chr4 163281879 163282528 -21006134 + L1MB7 LINE L1 3875 4535 -1611 1361 190 84 11 chr4 163282528 163282802 -21005860 - AluJo SINE Alu -18 294 1 2192 228 55 45 chr4 163282802 163282911 -21005751 + L1MB7 LINE L1 4535 4641 -1505 693 197 121 5 chr4 163282922 163283120 -21005542 + L1MA7 LINE L1 6070 6290 -1 227 282 0 0 chr4 163283171 163283242 -21005420 + L1MB7 LINE L1 4780 4850 -1296 1375 180 32 4 chr4 163283350 163283600 -21005062 + AluJb SINE Alu 30 286 -26 2986 207 96 38 chr4 163283613 163284695 -21003967 + L1MB7 LINE L1 5019 6175 -9 653 329 36 4 chr4 163284971 163285220 -21003442 + MIR SINE MIR 6 262 0 500 310 139 52 chr4 163285963 163286273 -21002389 + MLT1J2 LTR MaLR 110 450 0 1778 207 63 44 chr4 163286518 163287045 -21001617 + LTR55 LTR ERV 1 537 -11 466 319 99 43 chr4 163287247 163287661 -21001001 + MLT1L LTR MaLR 179 615 0 3851 98 30 38 chr4 163288190 163288821 -20999841 + L1PB2 LINE L1 5517 6142 -9 316 245 168 19 chr4 163289038 163289193 -20999469 + MER104 DNA Tc2 2 179 -1 198 103 0 0 chr4 163289219 163289248 -20999414 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 234 378 22 39 chr4 163289593 163289773 -20998889 + MLT1K LTR MaLR 106 282 -306 21 0 0 0 chr4 163291081 163291102 -20997560 + AT_rich Low_complexity Low_complexity 1 21 0 291 382 22 19 chr4 163292976 163293243 -20995419 - L3 LINE CR1 -626 951 684 1535 172 48 0 chr4 163293244 163293512 -20995150 + AluSx SINE Alu 2 282 -30 227 278 61 78 chr4 163293535 163293650 -20995012 - L3 LINE CR1 -882 695 583 784 201 32 104 chr4 163293717 163294025 -20994637 - L1MDa LINE L1 -1406 5134 4849 1032 269 55 67 chr4 163294057 163294652 -20994010 - L1MDa LINE L1 -2499 4041 3454 * 1880 218 25 0 chr4 163294650 163295090 -20993572 - L1P LINE L1 -770 5376 4926 4444 141 18 5 chr4 163295106 163295843 -20992819 + L1PA16 LINE L1 5410 6155 -11 1041 245 64 15 chr4 163295891 163296325 -20992337 - L1MDa LINE L1 -3222 3318 2839 430 223 35 81 chr4 163296332 163296529 -20992133 - L1MDa LINE L1 -4129 2592 2405 * 1004 291 108 56 chr4 163296518 163297335 -20991327 - L1MEc LINE L1 -5541 882 24 2008 92 32 25 chr4 163298506 163298788 -20989874 + AluSp SINE Alu 1 284 -29 1242 240 138 28 chr4 163299506 163299868 -20988794 + MER31A LTR ERV1 58 459 -26 754 160 0 0 chr4 163300129 163300248 -20988414 - AluJb SINE Alu -193 119 1 5899 221 52 33 chr4 163300248 163301452 -20987210 - L1MDa LINE L1 -4170 2370 1125 1838 129 39 4 chr4 163301452 163301562 -20987100 + AluY SINE Alu 3 108 -203 189 0 0 0 chr4 163301562 163301583 -20987079 + (TAA)n Simple_repeat Simple_repeat 1 21 0 1838 129 39 4 chr4 163301583 163301752 -20986910 + AluY SINE Alu 108 292 -19 5899 221 52 33 chr4 163301752 163302224 -20986438 - L1MDa LINE L1 -5415 1125 663 358 120 120 65 chr4 163302686 163302794 -20985868 + MER51D LTR ERV1 500 613 -44 1564 280 69 59 chr4 163302890 163303361 -20985301 - L1MDa LINE L1 -5875 665 185 198 0 0 0 chr4 163303361 163303383 -20985279 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 1564 280 69 59 chr4 163303383 163303551 -20985111 - L1MDa LINE L1 -6355 185 20 2436 72 0 0 chr4 163303551 163303857 -20984805 - AluY SINE Alu -5 306 1 404 302 26 0 chr4 163304489 163304605 -20984057 + MLT1E1 LTR MaLR 1 119 -535 4885 137 73 56 chr4 163304611 163306123 -20982539 - pTR5 LTR ERV1 0 2438 743 715 182 28 0 chr4 163306126 163306269 -20982393 + MLT1E1 LTR MaLR 122 268 -386 840 229 108 0 chr4 163306345 163306559 -20982103 + MLT1E1 LTR MaLR 418 654 0 233 328 0 0 chr4 163306657 163306718 -20981944 + MLT1H LTR MaLR 231 291 -258 291 249 182 67 chr4 163306963 163307128 -20981534 + MIR SINE MIR 35 218 -44 1207 202 101 4 chr4 163307135 163307402 -20981260 + MLT2D LTR ERVL 1 293 -121 204 40 0 0 chr4 163307402 163307427 -20981235 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 262 225 27 90 chr4 163307444 163307555 -20981107 - L1MC4 LINE L1 -1323 6719 6616 282 62 42 42 chr4 163307567 163307615 -20981047 + MLT2B3 LTR ERVL 507 554 0 1257 164 44 143 chr4 163308590 163308975 -20979687 - MER7A DNA MER2_type 0 346 2 306 0 0 0 chr4 163310427 163310461 -20978201 + (TA)n Simple_repeat Simple_repeat 1 34 0 233 60 0 120 chr4 163312158 163312208 -20976454 - MADE1 DNA Mariner -3 77 34 3321 169 39 31 chr4 163312362 163313104 -20975558 - L1MB2 LINE L1 -3 6168 5421 8673 55 109 6 chr4 163313235 163314414 -20974248 + L1P LINE L1 3 1303 -4843 5911 16 0 0 chr4 163314414 163315085 -20973577 + L1PA3 LINE L1 5480 6150 -5 1401 184 64 8 chr4 163315117 163315384 -20973278 + MER72 LTR ERV1 48 329 -393 849 207 23 6 chr4 163315374 163315548 -20973114 + MER72 LTR ERV1 546 722 0 * 2003 143 3 0 chr4 163316380 163316680 -20971982 + AluSx SINE Alu 1 301 -11 362 179 26 0 chr4 163316780 163316858 -20971804 + MER116 DNA Mariner 1 80 0 672 231 121 0 chr4 163317680 163317853 -20970809 + LTR29 LTR ERV1 2 195 -427 336 152 76 15 chr4 163317911 163317977 -20970685 + LTR49 LTR ERV1 522 591 -4 732 177 6 103 chr4 163318485 163318660 -20970002 - MER5A DNA MER1_type -22 167 10 232 325 62 0 chr4 163318658 163318738 -20969924 - L2 LINE L2 -45 3268 3184 * 260 155 121 0 chr4 163318754 163318812 -20969850 + L1MA6 LINE L1 5847 5911 -380 1904 138 41 63 chr4 163318842 163319254 -20969408 + L1MA6 LINE L1 5894 6296 -4 2066 112 3 3 chr4 163319273 163319559 -20969103 + AluSc SINE Alu 1 286 -23 303 127 0 0 chr4 163319560 163319623 -20969039 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 1587 147 8 131 chr4 163321677 163322059 -20966603 + MER7A DNA MER2_type 1 333 -13 234 91 0 0 chr4 163323582 163323615 -20965047 + (TA)n Simple_repeat Simple_repeat 1 33 0 207 100 0 0 chr4 163324100 163324130 -20964532 + (TC)n Simple_repeat Simple_repeat 1 30 0 1329 137 0 0 chr4 163374230 163374435 -20914227 + L1PA16 LINE L1 5708 5912 -254 1052 278 35 71 chr4 163374426 163374916 -20913746 - L1MCb LINE L1 -5404 641 170 * 203 103 26 26 chr4 163374922 163374961 -20913701 + (TCTA)n Simple_repeat Simple_repeat 1 39 0 257 345 46 29 chr4 163375399 163375573 -20913089 + L2 LINE L2 3136 3312 -1 24 32 0 0 chr4 163375737 163375768 -20912894 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr4 163376723 163376746 -20911916 + AT_rich Low_complexity Low_complexity 1 23 0 33 56 0 0 chr4 163377150 163377204 -20911458 + AT_rich Low_complexity Low_complexity 1 54 0 189 328 35 0 chr4 163377431 163377489 -20911173 - L2 LINE L2 -88 3184 3125 259 267 47 35 chr4 163377779 163377865 -20910797 + MLT1F LTR MaLR 83 169 -380 313 285 179 31 chr4 163377910 163378180 -20910482 + MLT1F LTR MaLR 274 517 -25 5675 44 25 0 chr4 163379895 163380601 -20908061 - L1PA6 LINE L1 0 6154 5431 578 335 102 0 chr4 163380686 163380901 -20907761 - MIR SINE MIR -13 249 13 753 212 90 21 chr4 163380910 163381099 -20907563 + MER58A DNA MER1_type 1 202 -22 21 82 0 0 chr4 163381727 163381776 -20906886 + AT_rich Low_complexity Low_complexity 1 49 0 1038 305 151 19 chr4 163382866 163383388 -20905274 - MLT1E LTR MaLR -2 591 1 1045 167 49 0 chr4 163383521 163383725 -20904937 - L1MA4 LINE L1 -6 6294 6081 932 254 117 3 chr4 163383784 163384075 -20904587 - MER5C DNA MER1_type 0 324 1 787 268 6 0 chr4 163384288 163384467 -20904195 - AluJb SINE Alu -4 308 129 1147 190 27 23 chr4 163384610 163384873 -20903789 + L1MC1 LINE L1 5807 6070 -263 35 54 0 0 chr4 163385088 163385144 -20903518 + AT_rich Low_complexity Low_complexity 1 56 0 32 81 0 0 chr4 163386319 163386393 -20902269 + AT_rich Low_complexity Low_complexity 1 74 0 1696 181 21 49 chr4 163386544 163386930 -20901732 + THE1C LTR MaLR 1 375 0 506 289 258 45 chr4 163388099 163388386 -20900276 + L2 LINE L2 1747 1972 -1342 1409 227 34 61 chr4 163388386 163388826 -20899836 + MSTC LTR MaLR 1 428 0 506 289 258 45 chr4 163388826 163388926 -20899736 + L2 LINE L2 1972 2049 -1265 4170 105 18 18 chr4 163388926 163389601 -20899061 - L1MA3 LINE L1 -2 6303 5629 506 289 258 45 chr4 163389601 163389992 -20898670 + L2 LINE L2 2049 2692 -622 192 318 15 15 chr4 163390253 163390319 -20898343 + L2 LINE L2 3241 3306 -7 50 65 0 0 chr4 163390433 163390525 -20898137 + AT_rich Low_complexity Low_complexity 1 92 0 279 173 0 0 chr4 163392230 163392282 -20896380 + GA-rich Low_complexity Low_complexity 3 54 0 233 318 118 41 chr4 163392711 163392906 -20895756 + L2 LINE L2 1466 1675 -1639 677 323 89 49 chr4 163392984 163393879 -20894783 + L2 LINE L2 1821 3272 0 4002 242 46 93 chr4 163393965 163395807 -20892855 - MER52A LTR ERV1 0 1755 1 1100 110 7 0 chr4 163395971 163396125 -20892537 + AluY SINE Alu 140 294 -17 27 29 0 0 chr4 163396740 163396774 -20891888 + AT_rich Low_complexity Low_complexity 1 34 0 720 235 0 6 chr4 163396779 163396949 -20891713 - L1MA5 LINE L1 -296 6004 5836 * 974 150 64 0 chr4 163396948 163397135 -20891527 + L1MA5 LINE L1 6013 6211 -89 25 0 0 0 chr4 163397152 163397177 -20891485 + AT_rich Low_complexity Low_complexity 1 25 0 203 350 0 0 chr4 163397300 163397360 -20891302 + L2 LINE L2 3246 3305 -8 21 0 0 0 chr4 163397475 163397496 -20891166 + AT_rich Low_complexity Low_complexity 1 21 0 682 328 103 34 chr4 163400349 163401039 -20887623 + L2 LINE L2 2561 3307 -6 185 391 0 0 chr4 163401085 163401154 -20887508 - L2 LINE L2 -1375 1939 1871 225 204 0 0 chr4 163401643 163401687 -20886975 + (TAA)n Simple_repeat Simple_repeat 1 44 0 234 250 0 62 chr4 163402015 163402079 -20886583 + MIR SINE MIR 50 109 -99 296 313 182 26 chr4 163402106 163402308 -20886354 + MIR SINE MIR 16 247 -15 241 286 0 57 chr4 163402635 163402705 -20885957 - MIR SINE MIR -99 109 44 22 0 0 0 chr4 163402818 163402840 -20885822 + AT_rich Low_complexity Low_complexity 1 22 0 445 342 122 0 chr4 163403203 163403425 -20885237 - MLT1J2 LTR MaLR -2 448 200 548 38 0 25 chr4 163403774 163403853 -20884809 + L1PA2 LINE L1 6079 6155 0 23 78 0 0 chr4 163404257 163404308 -20884354 + AT_rich Low_complexity Low_complexity 1 51 0 1803 144 3 7 chr4 163404781 163405116 -20883546 - AluSx SINE Alu 0 336 3 452 299 88 23 chr4 163405195 163405579 -20883083 + L1ME4a LINE L1 5497 5905 -216 183 139 0 0 chr4 163405603 163405639 -20883023 + (TG)n Simple_repeat Simple_repeat 2 37 0 1553 164 50 14 chr4 163406476 163406757 -20881905 + AluSx SINE Alu 7 297 -15 26 0 0 0 chr4 163406871 163406897 -20881765 + AT_rich Low_complexity Low_complexity 1 26 0 771 118 0 0 chr4 163407802 163407912 -20880750 - AluSp/q SINE Alu -6 307 198 3397 169 17 49 chr4 163409099 163409813 -20878849 + L1MB3 LINE L1 5486 6176 -7 289 366 0 10 chr4 163409900 163410001 -20878661 + MER5B DNA MER1_type 78 177 -1 2039 110 7 0 chr4 163412109 163412426 -20876236 + AluSx SINE Alu 1 319 0 182 61 0 61 chr4 163413593 163413626 -20875036 + (TATG)n Simple_repeat Simple_repeat 2 32 0 22130 51 7 2 chr4 163414016 163416799 -20871863 + L1P LINE L1 1 2796 -3350 9096 38 11 0 chr4 163416795 163417934 -20870728 + L1P LINE L1 4081 5232 -914 * 1248 158 23 34 chr4 163418038 163418304 -20870358 + L1MC1 LINE L1 6065 6327 -6 22 35 0 0 chr4 163418674 163418703 -20869959 + AT_rich Low_complexity Low_complexity 1 29 0 186 43 0 0 chr4 163419089 163419112 -20869550 + (CA)n Simple_repeat Simple_repeat 2 24 0 246 226 19 0 chr4 163419662 163419715 -20868947 + GA-rich Low_complexity Low_complexity 3 56 0 265 219 101 67 chr4 163419735 163419854 -20868808 - L2 LINE L2 -5 3308 3186 549 0 0 0 chr4 163420132 163420193 -20868469 + (TG)n Simple_repeat Simple_repeat 2 62 0 180 0 0 0 chr4 163420453 163420473 -20868189 + (TAA)n Simple_repeat Simple_repeat 2 21 0 233 276 0 0 chr4 163420473 163420531 -20868131 - MIR SINE MIR -81 181 124 26 0 0 0 chr4 163420558 163420584 -20868078 + AT_rich Low_complexity Low_complexity 1 26 0 1202 94 0 0 chr4 163422694 163422853 -20865809 - AluSq SINE Alu -3 310 152 444 232 136 8 chr4 163424217 163424342 -20864320 + MER58A DNA MER1_type 10 150 0 452 177 12 12 chr4 163424564 163424730 -20863932 + GA-rich Low_complexity Low_complexity 1 166 0 1070 273 52 16 chr4 163424730 163425246 -20863416 + MER90 LTR ERV1 2 613 -1 22 35 0 0 chr4 163425980 163426009 -20862653 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 163426660 163426681 -20861981 + AT_rich Low_complexity Low_complexity 1 21 0 231 262 74 101 chr4 163426836 163426985 -20861677 + L3 LINE CR1 914 1058 -519 257 254 0 42 chr4 163427017 163427088 -20861574 + L3 LINE CR1 1170 1237 -340 23 33 0 0 chr4 163427946 163427976 -20860686 + AT_rich Low_complexity Low_complexity 1 30 0 335 321 31 49 chr4 163428294 163428456 -20860206 + MIR SINE MIR 29 187 -75 676 298 29 33 chr4 163428938 163429180 -20859482 - MIR SINE MIR -21 241 1 521 133 78 11 chr4 163429905 163429995 -20858667 - MER105 DNA DNA -59 145 50 563 270 46 13 chr4 163430014 163430166 -20858496 - MER5A DNA MER1_type -32 157 1 2125 123 3 0 chr4 163430285 163430585 -20858077 - AluSc SINE Alu -8 301 1 189 195 0 0 chr4 163430962 163431003 -20857659 + (TA)n Simple_repeat Simple_repeat 1 41 0 302 279 19 10 chr4 163431458 163431562 -20857100 - L1ME1 LINE L1 -4 6162 6058 226 114 0 0 chr4 163431562 163431597 -20857065 - MER3 DNA MER1_type -160 49 15 2575 227 45 24 chr4 163431598 163432280 -20856382 - L1ME1 LINE L1 -145 6021 5325 2297 94 3 0 chr4 163432327 163432625 -20856037 - AluSp SINE Alu -14 299 1 255 265 154 17 chr4 163433170 163433287 -20855375 + MIR SINE MIR 19 151 -111 1983 92 4 0 chr4 163433816 163434087 -20854575 + L1P3 LINE L1 3 274 -6187 4364 58 2 5 chr4 163435132 163435685 -20852977 - L1PA7 LINE L1 -17 6137 5587 21 36 0 0 chr4 163435986 163436014 -20852648 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr4 163436072 163436098 -20852564 + AT_rich Low_complexity Low_complexity 1 26 0 934 289 10 29 chr4 163436166 163436575 -20852087 + L1M4 LINE L1 3712 4112 -2034 1187 225 39 61 chr4 163436629 163437081 -20851581 - MLT2B1 LTR ERVL 0 464 1 524 275 83 34 chr4 163437197 163437608 -20851054 + L1M4 LINE L1 3043 3473 -2673 22 0 0 0 chr4 163437621 163437643 -20851019 + AT_rich Low_complexity Low_complexity 1 22 0 901 273 37 13 chr4 163437667 163438048 -20850614 + L1M4 LINE L1 4218 4607 -1539 2409 280 16 21 chr4 163438085 163439214 -20849448 - L1MCa LINE L1 -3013 3551 2364 412 287 35 55 chr4 163439181 163439365 -20849297 - L1MCa LINE L1 -5241 804 623 * 672 129 0 72 chr4 163439365 163439504 -20849158 - L1PA16 LINE L1 -1 6165 6037 412 287 35 55 chr4 163439504 163439521 -20849141 - L1MCa LINE L1 -5422 623 607 * 447 165 35 0 chr4 163439506 163439591 -20849071 + L1P4 LINE L1 5628 5715 -451 195 129 0 0 chr4 163439700 163439731 -20848931 + (CA)n Simple_repeat Simple_repeat 2 32 0 657 268 83 18 chr4 163439837 163440065 -20848597 + MLT1C LTR MaLR 1 243 -224 507 315 84 25 chr4 163441434 163441672 -20846990 - MIR SINE MIR -3 259 8 548 326 38 25 chr4 163441805 163442044 -20846618 - MIR SINE MIR 0 262 21 416 276 146 43 chr4 163442648 163442833 -20845829 + MIR SINE MIR 1 204 -58 192 152 0 0 chr4 163442833 163442866 -20845796 + (TATG)n Simple_repeat Simple_repeat 2 34 0 284 48 24 0 chr4 163443158 163443200 -20845462 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 225 280 192 40 chr4 163443251 163443376 -20845286 + MIR SINE MIR 111 254 -8 2196 108 15 3 chr4 163444588 163444934 -20843728 + L1PA10 LINE L1 5820 6169 0 191 236 151 66 chr4 163445187 163445293 -20843369 - L2 LINE L2 -37 3276 3162 442 286 0 24 chr4 163446066 163446213 -20842449 + MIR SINE MIR 6 150 -58 1827 206 24 38 chr4 163448704 163449200 -20839462 - L1MB8 LINE L1 0 6178 5690 1842 148 0 0 chr4 163449541 163449858 -20838804 - AluSx SINE Alu 0 317 1 2391 68 0 13 chr4 163452797 163453106 -20835556 - AluY SINE Alu 0 311 7 310 346 124 22 chr4 163453673 163453858 -20834804 - MIR SINE MIR -13 249 46 1222 231 75 0 chr4 163454804 163455124 -20833538 + MER2 DNA MER2_type 1 344 0 2146 161 13 5 chr4 163456218 163456604 -20832058 + L1PA16 LINE L1 5773 6161 -5 22 0 0 0 chr4 163456615 163456637 -20832025 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 163456735 163456760 -20831902 + AT_rich Low_complexity Low_complexity 1 25 0 24 67 0 0 chr4 163457442 163457487 -20831175 + AT_rich Low_complexity Low_complexity 1 45 0 1909 159 7 3 chr4 163457838 163458139 -20830523 + AluJb SINE Alu 1 302 -10 21 36 0 0 chr4 163459521 163459549 -20829113 + AT_rich Low_complexity Low_complexity 1 28 0 40 59 0 0 chr4 163461098 163461166 -20827496 + AT_rich Low_complexity Low_complexity 1 68 0 1430 212 0 31 chr4 163461965 163462253 -20826409 + AluJo SINE Alu 3 281 -31 264 100 0 0 chr4 163462342 163462382 -20826280 + (CA)n Simple_repeat Simple_repeat 2 41 0 238 277 36 0 chr4 163462454 163462537 -20826125 + L1ME3 LINE L1 6076 6161 -1 35 41 0 0 chr4 163462555 163462604 -20826058 + AT_rich Low_complexity Low_complexity 1 49 0 1887 117 28 14 chr4 163464142 163464433 -20824229 - AluSx SINE Alu -9 303 9 252 122 0 0 chr4 163465317 163465358 -20823304 + (TG)n Simple_repeat Simple_repeat 2 42 0 272 216 35 17 chr4 163467002 163467118 -20821544 + (TA)n Simple_repeat Simple_repeat 2 119 0 535 331 88 20 chr4 163467302 163467607 -20821055 + MLT1J1 LTR MaLR 1 326 -120 1041 259 82 38 chr4 163467973 163468340 -20820322 + MSTD LTR MaLR 1 383 -13 258 379 0 11 chr4 163469593 163469688 -20818974 + HERV16 LTR ERVL 2810 2903 -2093 316 331 46 20 chr4 163469693 163469844 -20818818 + HERV16 LTR ERVL 3044 3198 -2566 398 327 142 9 chr4 163469960 163470171 -20818491 + HERV16 LTR ERVL 3355 3593 -2061 413 392 35 0 chr4 163470238 163470524 -20818138 + HERV16 LTR ERVL 3739 4034 -1730 376 238 76 0 chr4 163470714 163470819 -20817843 + HERV16 LTR ERVL 4165 4277 -1208 531 290 118 16 chr4 163471380 163471694 -20816968 + LTR33 LTR ERVL 159 504 -17 1349 98 5 10 chr4 163472096 163472299 -20816363 + L1PB1 LINE L1 5950 6151 0 23 54 0 0 chr4 163472325 163472362 -20816300 + AT_rich Low_complexity Low_complexity 1 37 0 1730 140 10 127 chr4 163473210 163473603 -20815059 - MER7A DNA MER2_type -1 345 1 309 319 52 44 chr4 163474474 163474609 -20814053 + L2 LINE L2 2946 3081 -191 2058 148 82 15 chr4 163474964 163475356 -20813306 - Tigger2a DNA MER2_type -16 418 1 931 196 93 49 chr4 163475585 163475810 -20812852 + AluJo SINE Alu 41 275 -37 288 0 0 0 chr4 163475815 163475847 -20812815 + (CAA)n Simple_repeat Simple_repeat 2 33 0 30 0 0 0 chr4 163475879 163475909 -20812753 + AT_rich Low_complexity Low_complexity 1 30 0 504 235 125 0 chr4 163476080 163476216 -20812446 - MLT1J LTR MaLR -356 155 3 2154 82 36 0 chr4 163476354 163476659 -20812003 - L1PA11 LINE L1 -3 6171 5856 294 337 88 12 chr4 163476878 163477207 -20811455 - HAL1 LINE L1 -794 1713 1360 453 66 0 0 chr4 163477524 163477585 -20811077 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 36 23 0 0 chr4 163480695 163480738 -20807924 + AT_rich Low_complexity Low_complexity 1 43 0 293 0 0 26 chr4 163480825 163480863 -20807799 + (TTA)n Simple_repeat Simple_repeat 1 37 0 21 0 0 0 chr4 163484227 163484248 -20804414 + AT_rich Low_complexity Low_complexity 1 21 0 2130 107 3 3 chr4 163484639 163484947 -20803715 + AluSc SINE Alu 1 308 -1 228 122 0 0 chr4 163485327 163485368 -20803294 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 284 268 14 0 chr4 163485960 163486031 -20802631 - MLT1K LTR MaLR -379 209 138 207 0 0 0 chr4 163486100 163486123 -20802539 + (A)n Simple_repeat Simple_repeat 1 23 0 31 0 0 0 chr4 163486331 163486362 -20802300 + AT_rich Low_complexity Low_complexity 1 31 0 1351 257 48 24 chr4 163486369 163486825 -20801837 - MLT1C LTR MaLR 0 467 1 195 129 0 0 chr4 163486931 163486962 -20801700 + (TG)n Simple_repeat Simple_repeat 2 32 0 198 395 0 12 chr4 163487425 163487506 -20801156 - MIR SINE MIR -154 108 29 195 241 30 181 chr4 163487711 163487844 -20800818 + MIR SINE MIR 3 115 -147 192 349 23 68 chr4 163488234 163488366 -20800296 - MIR3 SINE MIR -6 202 77 298 323 25 32 chr4 163488497 163488655 -20800007 + MIR SINE MIR 1 157 -105 1178 196 26 15 chr4 163489071 163489342 -20799320 + L1MA6 LINE L1 6027 6300 0 338 333 0 0 chr4 163489560 163489640 -20799022 + MER2 DNA MER2_type 1 80 -265 236 222 0 0 chr4 163489640 163489685 -20798977 - MER2 DNA MER2_type -1 344 300 317 219 0 0 chr4 163489695 163489759 -20798903 + MER2 DNA MER2_type 282 345 0 569 195 73 18 chr4 163490439 163490603 -20798059 - L1MC1 LINE L1 -353 5980 5808 * 6404 237 58 17 chr4 163490587 163493441 -20795221 - L1MCa LINE L1 -1664 4762 1790 25 65 0 0 chr4 163493869 163493915 -20794747 + AT_rich Low_complexity Low_complexity 1 46 0 386 79 16 0 chr4 163494577 163494640 -20794022 + (TC)n Simple_repeat Simple_repeat 1 64 0 180 167 0 0 chr4 163494639 163494687 -20793975 + (CA)n Simple_repeat Simple_repeat 1 48 0 * 1357 304 47 71 chr4 163495143 163495893 -20792769 + L2 LINE L2 233 964 -2350 1866 102 81 28 chr4 163495895 163496179 -20792483 - AluSc SINE Alu -10 299 1 17874 165 72 28 chr4 163496484 163502082 -20786580 + L1MA3 LINE L1 12 5865 -1700 6671 109 13 5 chr4 163502098 163503114 -20785548 + L1MA3 LINE L1 6673 7696 -28 23 0 0 0 chr4 163503114 163503137 -20785525 + AT_rich Low_complexity Low_complexity 1 23 0 616 122 21 23 chr4 163503137 163503443 -20785219 + (TA)n Simple_repeat Simple_repeat 1 305 0 85 11 0 0 chr4 163503443 163503535 -20785127 + AT_rich Low_complexity Low_complexity 1 92 0 653 110 35 6 chr4 163503535 163503708 -20784954 + (TA)n Simple_repeat Simple_repeat 2 179 0 244 111 37 0 chr4 163503724 163503778 -20784884 + (TA)n Simple_repeat Simple_repeat 1 56 0 652 297 72 72 chr4 163504049 163504550 -20784112 + L2 LINE L2 959 1459 -1855 26 30 0 0 chr4 163505216 163505249 -20783413 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chr4 163505677 163505710 -20782952 + AT_rich Low_complexity Low_complexity 1 33 0 1942 157 0 7 chr4 163505944 163506243 -20782419 - AluJb SINE Alu -15 297 1 24 32 0 0 chr4 163507026 163507057 -20781605 + AT_rich Low_complexity Low_complexity 1 31 0 347 306 109 55 chr4 163507712 163508205 -20780457 - LTR33 LTR ERVL -1 520 1 22 0 0 0 chr4 163509159 163509181 -20779481 + AT_rich Low_complexity Low_complexity 1 22 0 683 314 14 5 chr4 163509302 163509509 -20779153 + MER58A DNA MER1_type 1 209 -15 22 35 0 0 chr4 163509593 163509622 -20779040 + AT_rich Low_complexity Low_complexity 1 29 0 331 278 69 101 chr4 163509651 163510247 -20778415 + L1MEc LINE L1 1233 1769 -4446 318 255 0 94 chr4 163510310 163510459 -20778203 + L1ME LINE L1 5603 5737 -433 296 244 8 0 chr4 163510565 163510692 -20777970 + (TA)n Simple_repeat Simple_repeat 1 128 0 325 214 41 82 chr4 163510695 163510793 -20777869 - L1MC4 LINE L1 -1337 6705 6612 338 197 0 33 chr4 163510793 163510915 -20777747 + (TA)n Simple_repeat Simple_repeat 1 118 0 228 143 54 18 chr4 163510918 163510974 -20777688 + L1MC3 LINE L1 6589 6646 -1139 552 205 0 0 chr4 163510974 163511125 -20777537 + (TA)n Simple_repeat Simple_repeat 2 152 0 263 277 25 75 chr4 163511257 163511272 -20777390 + L1MCc LINE L1 247 261 -6162 894 133 6 18 chr4 163511272 163511438 -20777224 + L1MA4 LINE L1 6137 6300 0 263 277 25 75 chr4 163511438 163511700 -20776962 + L1MCc LINE L1 261 510 -5913 273 307 102 0 chr4 163512098 163512225 -20776437 + L1MCc LINE L1 1178 1317 -5106 207 100 0 0 chr4 163514100 163514130 -20774532 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 869 302 16 4 chr4 163514349 163514594 -20774068 + MIR SINE MIR 14 261 -1 37 0 0 0 chr4 163515354 163515391 -20773271 + AT_rich Low_complexity Low_complexity 1 37 0 312 102 0 0 chr4 163516224 163516273 -20772389 + (TCCC)n Simple_repeat Simple_repeat 3 51 0 * 378 98 37 24 chr4 163516271 163516353 -20772309 + T-rich Low_complexity Low_complexity 5 87 0 1115 165 103 37 chr4 163516372 163516615 -20772047 - AluJb SINE Alu -14 298 40 23 0 0 0 chr4 163517157 163517180 -20771482 + AT_rich Low_complexity Low_complexity 1 23 0 28 71 0 0 chr4 163517429 163517485 -20771177 + AT_rich Low_complexity Low_complexity 1 56 0 2157 112 0 10 chr4 163517936 163518249 -20770413 - AluSg SINE Alu 0 310 1 1633 298 123 35 chr4 163518275 163519395 -20769267 + L2 LINE L2 2005 3222 -91 422 0 38 0 chr4 163519395 163519448 -20769214 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 1633 298 123 35 chr4 163519448 163519541 -20769121 + L2 LINE L2 3222 3305 -8 816 273 75 70 chr4 163519565 163519639 -20769023 - MLT1J LTR MaLR 0 511 439 2306 73 0 3 chr4 163519639 163519942 -20768720 + AluY SINE Alu 1 302 -9 816 273 75 70 chr4 163519942 163520307 -20768355 - MLT1J LTR MaLR -72 439 70 2004 123 10 3 chr4 163520472 163520772 -20767890 + AluSq SINE Alu 1 302 -11 2256 98 0 0 chr4 163521631 163521926 -20766736 - AluSx SINE Alu -11 301 7 385 301 89 14 chr4 163522420 163522633 -20766029 + L2 LINE L2 1817 2045 -1269 1241 67 22 17 chr4 163522761 163522940 -20765722 + MER30B DNA MER1_type 6 185 -5 680 280 0 36 chr4 163523305 163523498 -20765164 + MER5A DNA MER1_type 2 187 -2 22 0 0 0 chr4 163523964 163523986 -20764676 + AT_rich Low_complexity Low_complexity 1 22 0 724 165 0 0 chr4 163524229 163524344 -20764318 - AluJo SINE Alu -22 290 176 722 190 0 0 chr4 163524346 163524467 -20764195 - AluJo SINE Alu -189 123 3 36 62 0 0 chr4 163524474 163524538 -20764124 + AT_rich Low_complexity Low_complexity 1 64 0 26 30 0 0 chr4 163525422 163525455 -20763207 + AT_rich Low_complexity Low_complexity 1 33 0 1997 111 3 52 chr4 163525511 163525818 -20762844 + AluSx SINE Alu 3 294 -18 870 281 96 39 chr4 163526768 163527205 -20761457 - MLT1C LTR MaLR 0 467 6 1666 212 127 0 chr4 163527252 163527700 -20760962 + MLT1D LTR MaLR 1 505 0 2104 133 0 13 chr4 163528220 163528535 -20760127 - AluSx SINE Alu 0 312 2 243 198 49 0 chr4 163529263 163529344 -20759318 + (TA)n Simple_repeat Simple_repeat 1 85 0 342 0 0 0 chr4 163529884 163529922 -20758740 + (TG)n Simple_repeat Simple_repeat 2 39 0 735 208 67 6 chr4 163530260 163530438 -20758224 + MER5A DNA MER1_type 1 189 0 23 33 0 0 chr4 163530891 163530921 -20757741 + AT_rich Low_complexity Low_complexity 1 30 0 224 356 68 8 chr4 163531023 163531141 -20757521 + L2 LINE L2 3187 3311 -2 * 237 232 18 18 chr4 163531138 163531194 -20757468 + MIR SINE MIR 87 142 -66 23 54 0 0 chr4 163531642 163531679 -20756983 + AT_rich Low_complexity Low_complexity 1 37 0 226 224 0 0 chr4 163531859 163531917 -20756745 - L1ME4a LINE L1 -4 6117 6060 21 71 0 0 chr4 163532189 163532231 -20756431 + AT_rich Low_complexity Low_complexity 1 42 0 399 345 116 10 chr4 163534009 163534424 -20754238 + MLT1L LTR MaLR 143 601 -14 2267 194 122 17 chr4 163534701 163535243 -20753419 + LTR48 LTR ERV1 189 787 0 1410 251 113 49 chr4 163535856 163536514 -20752148 + HAL1 LINE L1 1138 1837 -670 519 294 86 48 chr4 163536861 163537364 -20751298 + HAL1 LINE L1 1978 2499 -8 23 33 0 0 chr4 163537602 163537632 -20751030 + AT_rich Low_complexity Low_complexity 1 30 0 188 364 0 0 chr4 163538661 163538727 -20749935 - L2 LINE L2 0 3272 3207 1426 283 142 48 chr4 163538946 163539828 -20748834 - L2 LINE L2 -354 2960 1996 12253 94 3 2 chr4 163539834 163541583 -20747079 + L1PA7 LINE L1 1812 3561 -2585 4301 81 3 2 chr4 163541584 163542185 -20746477 + L1PA7 LINE L1 5563 6164 0 291 320 88 0 chr4 163542185 163542310 -20746352 - L2 LINE L2 -1333 1981 1846 904 179 31 58 chr4 163542331 163542555 -20746107 + MER20 DNA MER1_type 1 218 -1 195 344 125 0 chr4 163543406 163543502 -20745160 - L2 LINE L2 0 3313 3206 246 149 0 0 chr4 163544026 163544073 -20744589 + LTR66 LTR ERVL 392 438 -172 357 229 147 0 chr4 163544074 163544183 -20744479 + MIR SINE MIR 19 143 -119 628 308 12 0 chr4 163545274 163545446 -20743216 + MER5B DNA MER1_type 4 177 -1 2316 62 13 3 chr4 163545630 163545934 -20742728 - AluY SINE Alu -4 307 1 588 237 59 31 chr4 163547144 163547366 -20741296 - MIR SINE MIR 0 262 41 788 219 0 37 chr4 163547592 163547779 -20740883 - MER3 DNA MER1_type -28 181 2 533 206 34 20 chr4 163548187 163548333 -20740329 + Charlie4 DNA MER1_type 1767 1914 -47 249 159 0 0 chr4 163548348 163548392 -20740270 + (CA)n Simple_repeat Simple_repeat 1 44 0 1867 139 10 3 chr4 163549284 163549572 -20739090 - AluSx SINE Alu -21 291 2 702 177 82 129 chr4 163549928 163549988 -20738674 - MER33 DNA MER1_type -2261 324 263 1072 103 6 12 chr4 163549988 163550153 -20738509 + L1PA8 LINE L1 6005 6168 -4 702 177 82 129 chr4 163550153 163550409 -20738253 - MER33 DNA MER1_type -2322 263 23 21 36 0 0 chr4 163551599 163551627 -20737035 + AT_rich Low_complexity Low_complexity 1 28 0 183 42 0 0 chr4 163551909 163551933 -20736729 + (CA)n Simple_repeat Simple_repeat 2 25 0 24 32 0 0 chr4 163552120 163552151 -20736511 + AT_rich Low_complexity Low_complexity 1 31 0 25 65 0 0 chr4 163552475 163552521 -20736141 + AT_rich Low_complexity Low_complexity 1 46 0 211 333 121 0 chr4 163553263 163553362 -20735300 + MIR SINE MIR 81 191 -71 307 222 170 41 chr4 163553433 163553604 -20735058 + MER34 LTR ERV1 1 193 -349 15071 34 1 0 chr4 163553609 163556207 -20732455 + L1PA3 LINE L1 3556 6152 -3 853 83 30 0 chr4 163556216 163556348 -20732314 + L1MA3 LINE L1 5769 5904 -401 390 310 168 41 chr4 163556792 163556989 -20731673 + MIR SINE MIR 3 224 -38 32 0 0 0 chr4 163558713 163558745 -20729917 + AT_rich Low_complexity Low_complexity 1 32 0 24 32 0 0 chr4 163559372 163559403 -20729259 + AT_rich Low_complexity Low_complexity 1 31 0 2468 177 50 2 chr4 163559576 163560056 -20728606 - L1PB4 LINE L1 -2 6154 5652 23 33 0 0 chr4 163560149 163560179 -20728483 + AT_rich Low_complexity Low_complexity 1 30 0 355 322 51 23 chr4 163560707 163560921 -20727741 + MIR SINE MIR 26 245 -17 207 0 0 0 chr4 163561083 163561106 -20727556 + (A)n Simple_repeat Simple_repeat 1 23 0 22 35 0 0 chr4 163561424 163561453 -20727209 + AT_rich Low_complexity Low_complexity 1 29 0 620 256 24 66 chr4 163562262 163562473 -20726189 - MER20 DNA MER1_type 0 219 18 332 308 68 44 chr4 163562574 163562824 -20725838 - L1ME4a LINE L1 -191 5930 5675 4187 37 0 0 chr4 163563379 163563889 -20724773 + L1PA4 LINE L1 5645 6154 -1 808 271 60 23 chr4 163563893 163564192 -20724470 + MER39 LTR ERV1 393 702 -5 208 254 18 0 chr4 163564194 163564249 -20724413 - MIR SINE MIR -39 223 168 361 225 75 7 chr4 163564258 163564432 -20724230 - MER3 DNA MER1_type 0 209 1 23 54 0 0 chr4 163564795 163564832 -20723830 + AT_rich Low_complexity Low_complexity 1 37 0 22 88 0 0 chr4 163564887 163564944 -20723718 + AT_rich Low_complexity Low_complexity 1 57 0 2709 121 36 7 chr4 163565134 163565579 -20723083 - L1MA3 LINE L1 0 6305 5848 5000 87 4 0 chr4 163566262 163566955 -20721707 - L1PA8 LINE L1 -1 6171 5476 2447 71 17 0 chr4 163566955 163567389 -20721273 + L1PA8 LINE L1 5049 5487 -667 2290 134 20 3 chr4 163569678 163570036 -20718626 + THE1B LTR MaLR 1 364 0 8939 118 65 37 chr4 163570036 163571573 -20717089 + THE1B-int LTR MaLR 1 1580 0 2208 139 28 0 chr4 163571576 163571928 -20716734 + THE1B LTR MaLR 3 364 0 698 289 78 5 chr4 163572289 163572507 -20716155 - MIR SINE MIR -1 261 28 201 268 0 0 chr4 163573677 163573733 -20714929 + A-rich Low_complexity Low_complexity 1 56 0 269 194 0 28 chr4 163574551 163574623 -20714039 + (TATATG)n Simple_repeat Simple_repeat 2 71 0 274 339 97 0 chr4 163575476 163575600 -20713062 - L2 LINE L2 -1 3271 3136 25 0 0 0 chr4 163576085 163576110 -20712552 + AT_rich Low_complexity Low_complexity 1 25 0 189 175 0 0 chr4 163576649 163576689 -20711973 + (CA)n Simple_repeat Simple_repeat 1 40 0 1630 195 27 69 chr4 163577282 163577687 -20710975 + MLT1B LTR MaLR 3 390 0 2034 174 134 7 chr4 163577724 163578172 -20710490 - MLT1D LTR MaLR 0 505 1 309 266 0 55 chr4 163579124 163579233 -20709429 - MIR SINE MIR -21 241 139 1864 254 106 13 chr4 163579236 163579792 -20708870 - MER90 LTR ERV1 -5 609 2 429 307 47 8 chr4 163579808 163579935 -20708727 - MIR SINE MIR -130 132 1 384 289 89 89 chr4 163579999 163580314 -20708348 + Charlie2 DNA MER1_type 44 358 -2424 317 267 147 39 chr4 163580389 163580898 -20707764 + Charlie2 DNA MER1_type 2299 2862 0 21 82 0 0 chr4 163582731 163582780 -20705882 + AT_rich Low_complexity Low_complexity 1 49 0 1350 299 178 14 chr4 163582866 163583807 -20704855 + L2 LINE L2 2184 3292 -21 1938 135 17 7 chr4 163584379 163584668 -20703994 - AluSg SINE Alu -15 295 4 338 228 22 61 chr4 163584959 163585034 -20703628 + MLT1F LTR MaLR 441 450 -92 267 31 0 0 chr4 163585034 163585066 -20703596 + (CAGCC)n Simple_repeat Simple_repeat 1 32 0 338 228 22 61 chr4 163585066 163585156 -20703506 + MLT1F LTR MaLR 450 542 0 450 290 0 28 chr4 163586288 163586433 -20702229 - MIR SINE MIR -10 252 112 21 0 0 0 chr4 163587995 163588016 -20700646 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 163588089 163588117 -20700545 + AT_rich Low_complexity Low_complexity 1 28 0 2307 96 6 3 chr4 163588181 163588493 -20700169 + AluSq SINE Alu 1 313 0 2177 109 0 10 chr4 163588530 163588834 -20699828 + AluSx SINE Alu 1 301 -11 23 68 0 0 chr4 163588879 163588923 -20699739 + AT_rich Low_complexity Low_complexity 1 44 0 1035 298 61 23 chr4 163589881 163590358 -20698304 + L1ME LINE L1 1029 1523 -4900 1278 256 75 61 chr4 163590395 163591160 -20697502 + L1ME LINE L1 3889 4663 -2278 349 193 9 114 chr4 163591162 163591276 -20697386 + L1ME LINE L1 6359 6449 -512 8170 194 72 60 chr4 163591313 163593085 -20695577 - L1MA9 LINE L1 0 6200 4451 669 145 48 0 chr4 163593085 163593209 -20695453 - MER51A LTR ERV1 -35 599 470 8170 194 72 60 chr4 163593209 163594951 -20693711 - L1MA9 LINE L1 -1749 4451 2515 586 265 87 71 chr4 163594944 163595463 -20693199 - L1M4c LINE L1 -3986 2048 1523 * 2196 274 26 55 chr4 163595463 163596977 -20691685 - L1M4c LINE L1 -4748 1288 306 1595 286 108 12 chr4 163597133 163597802 -20690860 - L1MA9 LINE L1 -5221 734 2 815 206 17 17 chr4 163598155 163598335 -20690327 - MLT1E LTR MaLR 0 593 414 206 293 40 0 chr4 163598728 163598803 -20689859 + C-rich Low_complexity Low_complexity 4 81 0 333 0 0 0 chr4 163599261 163599298 -20689364 + (TG)n Simple_repeat Simple_repeat 2 38 0 189 343 0 0 chr4 163602082 163602155 -20686507 - MIR SINE MIR -13 249 177 24 0 0 0 chr4 163603504 163603528 -20685134 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr4 163603561 163603599 -20685063 + AT_rich Low_complexity Low_complexity 1 38 0 670 263 48 16 chr4 163605576 163605892 -20682770 - L1MDa LINE L1 -2647 3893 3568 416 106 0 118 chr4 163605898 163605983 -20682679 + MADE1 DNA Mariner 6 80 0 1299 236 35 2 chr4 163605987 163606410 -20682252 - L1MDa LINE L1 -2976 3564 3128 2486 214 126 39 chr4 163606511 163607363 -20681299 - L1MDa LINE L1 -4322 2218 1259 2387 56 7 7 chr4 163607363 163607666 -20680996 - AluY SINE Alu -8 303 1 2486 214 126 39 chr4 163607666 163607849 -20680813 - L1MDa LINE L1 -5281 1259 1093 467 132 60 0 chr4 163608143 163608380 -20680282 + (TA)n Simple_repeat Simple_repeat 1 251 0 419 201 23 0 chr4 163608405 163608579 -20680083 + (TA)n Simple_repeat Simple_repeat 1 178 0 252 217 283 46 chr4 163608702 163608854 -20679808 + MIR SINE MIR 14 201 -61 742 197 0 0 chr4 163608866 163608988 -20679674 + FLAM_C SINE Alu 2 123 -10 22 0 0 0 chr4 163609094 163609116 -20679546 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr4 163609274 163609306 -20679356 + AT_rich Low_complexity Low_complexity 1 32 0 1981 128 0 24 chr4 163609860 163610158 -20678504 - AluSc SINE Alu -14 295 5 22 35 0 0 chr4 163610708 163610737 -20677925 + AT_rich Low_complexity Low_complexity 1 29 0 530 216 0 10 chr4 163611803 163611905 -20676757 + MLT1J LTR MaLR 99 199 -312 30 27 0 0 chr4 163612498 163612535 -20676127 + AT_rich Low_complexity Low_complexity 1 37 0 222 336 20 68 chr4 163612652 163612798 -20675864 - L2 LINE L2 -6 3266 3128 281 230 11 35 chr4 163613417 163613504 -20675158 + (CATA)n Simple_repeat Simple_repeat 4 88 0 22 35 0 0 chr4 163615464 163615493 -20673169 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr4 163615698 163615718 -20672944 + (A)n Simple_repeat Simple_repeat 1 20 0 35 63 0 0 chr4 163616351 163616414 -20672248 + AT_rich Low_complexity Low_complexity 1 63 0 26 0 0 0 chr4 163616576 163616602 -20672060 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr4 163617538 163617560 -20671102 + AT_rich Low_complexity Low_complexity 1 22 0 274 306 72 67 chr4 163619356 163619536 -20669126 - MLT1E LTR MaLR -294 299 119 522 294 55 7 chr4 163619564 163619710 -20668952 - MLT1E LTR MaLR -438 155 3 336 24 0 0 chr4 163621820 163621861 -20666801 + (TG)n Simple_repeat Simple_repeat 2 42 0 854 339 66 10 chr4 163621875 163622282 -20666380 + LTR16A LTR ERVL 19 448 -2 396 0 0 0 chr4 163622293 163622337 -20666325 + (TAA)n Simple_repeat Simple_repeat 2 45 0 235 339 95 53 chr4 163622565 163622754 -20665908 + L3 LINE CR1 1201 1397 -180 26 30 0 0 chr4 163625549 163625582 -20663080 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr4 163625645 163625669 -20662993 + AT_rich Low_complexity Low_complexity 1 24 0 598 278 98 66 chr4 163626071 163626478 -20662184 + MLT1L LTR MaLR 196 615 0 711 349 50 26 chr4 163626541 163626893 -20661769 + MLT1J LTR MaLR 1 368 -143 1785 141 54 35 chr4 163626893 163627261 -20661401 - THE1C LTR MaLR 0 375 1 711 349 50 26 chr4 163627261 163627364 -20661298 + MLT1J LTR MaLR 368 467 -44 980 230 47 47 chr4 163627425 163627721 -20660941 - AluJo SINE Alu -5 297 2 510 50 112 0 chr4 163627732 163627975 -20660687 + (TA)n Simple_repeat Simple_repeat 1 270 0 1927 120 18 3 chr4 163627975 163628258 -20660404 - AluSg SINE Alu -23 287 1 1811 140 0 4 chr4 163628426 163628690 -20659972 + AluSx SINE Alu 36 298 -14 1368 116 149 4 chr4 163629206 163629447 -20659215 + L1MA5A LINE L1 6019 6294 -3 25 0 0 0 chr4 163629447 163629472 -20659190 + AT_rich Low_complexity Low_complexity 1 25 0 1042 51 0 7 chr4 163630096 163630234 -20658428 + L1PA4 LINE L1 6019 6155 0 244 323 131 0 chr4 163630817 163630916 -20657746 + MIR SINE MIR 2 113 -149 21 36 0 0 chr4 163631622 163631650 -20657012 + AT_rich Low_complexity Low_complexity 1 28 0 229 128 0 0 chr4 163631712 163631751 -20656911 - MER114 LTR ERV -293 355 317 275 413 67 18 chr4 163632466 163632689 -20655973 + L2 LINE L2 2827 3060 -212 25 31 0 0 chr4 163632896 163632928 -20655734 + AT_rich Low_complexity Low_complexity 1 32 0 2683 76 8 3 chr4 163633432 163633801 -20654861 + THE1B-int LTR MaLR 1210 1580 0 2075 131 76 15 chr4 163633801 163634144 -20654518 + THE1B LTR MaLR 1 364 0 2001 107 7 17 chr4 163634591 163634889 -20653773 - AluSq SINE Alu -18 295 1 208 87 0 43 chr4 163637309 163637355 -20651307 + (TA)n Simple_repeat Simple_repeat 2 45 0 1878 162 0 55 chr4 163639589 163639953 -20648709 - MER2 DNA MER2_type 0 344 1 1618 175 3 29 chr4 163642727 163643035 -20645627 - AluJb SINE Alu -12 300 1 1537 182 0 33 chr4 163643426 163643728 -20644934 + AluJo SINE Alu 1 292 -20 4570 159 39 14 chr4 163643952 163644808 -20643854 + L1MB2 LINE L1 5293 6169 -2 406 179 48 0 chr4 163644819 163644987 -20643675 + (TA)n Simple_repeat Simple_repeat 1 176 0 875 55 18 0 chr4 163645088 163645198 -20643464 - AluY SINE Alu -177 134 23 1106 266 22 32 chr4 163645216 163645618 -20643044 - L1MDa LINE L1 -6140 400 3 923 169 52 172 chr4 163645638 163645854 -20642808 - AluJo SINE Alu -13 289 123 267 31 0 0 chr4 163645854 163645886 -20642776 + (TTG)n Simple_repeat Simple_repeat 2 33 0 923 169 52 172 chr4 163645886 163645995 -20642667 - AluJo SINE Alu -179 123 3 547 294 139 25 chr4 163646036 163646352 -20642310 + MLT1J LTR MaLR 24 375 -136 2191 115 7 0 chr4 163646384 163646688 -20641974 + AluSq SINE Alu 1 306 -7 1389 241 42 89 chr4 163646732 163647144 -20641518 + MLT1F LTR MaLR 110 466 -76 2035 128 0 3 chr4 163647144 163647440 -20641222 - AluSg SINE Alu -11 299 5 1389 241 42 89 chr4 163647440 163647514 -20641148 + MLT1F LTR MaLR 466 542 0 189 0 0 0 chr4 163647547 163647568 -20641094 + (TG)n Simple_repeat Simple_repeat 1 21 0 2083 128 16 0 chr4 163648065 163648371 -20640291 - AluSx SINE Alu -1 311 1 223 350 126 12 chr4 163648440 163648686 -20639976 + L2 LINE L2 3016 3289 -24 199 304 0 0 chr4 163649942 163649988 -20638674 - MIR3 SINE MIR -52 156 111 257 211 39 123 chr4 163650468 163650672 -20637990 + MER112 DNA MER1_type 41 227 -33 961 133 0 0 chr4 163650690 163650825 -20637837 - AluSx SINE Alu -139 173 39 477 315 112 36 chr4 163650882 163651551 -20637111 - HAL1 LINE L1 -124 2383 1664 195 42 0 0 chr4 163651777 163651801 -20636861 + (TA)n Simple_repeat Simple_repeat 2 25 0 441 297 32 9 chr4 163651813 163652032 -20636630 - HAL1 LINE L1 -1435 1072 849 589 322 54 11 chr4 163652129 163652483 -20636179 - HAL1 LINE L1 -2138 369 1 24 53 0 0 chr4 163652486 163652524 -20636138 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr4 163653594 163653618 -20635044 + AT_rich Low_complexity Low_complexity 1 24 0 489 229 0 19 chr4 163653643 163653748 -20634914 - MER115 DNA AcHobo -3 690 588 457 310 125 38 chr4 163654729 163655016 -20633646 - MLT1J LTR MaLR -174 337 26 987 208 5 5 chr4 163655578 163655794 -20632868 - L1 LINE L1 -1133 5013 4798 3177 211 29 18 chr4 163655798 163656648 -20632014 + L1MB1 LINE L1 5164 6030 -159 26 0 0 0 chr4 163656811 163656837 -20631825 + AT_rich Low_complexity Low_complexity 1 26 0 251 164 68 0 chr4 163657846 163657919 -20630743 + (CATA)n Simple_repeat Simple_repeat 3 80 0 653 207 84 81 chr4 163658299 163658633 -20630029 - MLT1A1 LTR MaLR 0 396 19 21 36 0 0 chr4 163658879 163658907 -20629755 + AT_rich Low_complexity Low_complexity 1 28 0 4825 138 54 10 chr4 163658991 163659826 -20628836 + L1PB2 LINE L1 5279 6150 -1 304 258 109 52 chr4 163660351 163660680 -20627982 - L1M4 LINE L1 -3114 3032 2685 272 326 90 42 chr4 163660924 163661068 -20627594 + MIR3 SINE MIR 52 202 -6 1517 107 39 0 chr4 163662360 163662594 -20626068 + MER75B DNA T2_type 1 243 0 7582 28 0 7 chr4 163662785 163663929 -20624733 + L1PA3 LINE L1 5015 6152 -3 378 0 0 0 chr4 163663961 163664003 -20624659 + (CA)n Simple_repeat Simple_repeat 1 42 0 1882 95 61 34 chr4 163664014 163664309 -20624353 + AluSg SINE Alu 1 303 -7 1752 145 85 0 chr4 163664855 163665137 -20623525 - AluSx SINE Alu -6 306 1 5740 188 37 7 chr4 163665365 163666603 -20622059 - L1MC2 LINE L1 -30 6314 5008 2067 184 18 0 chr4 163666603 163666999 -20621663 + MER57A LTR ERV1 1 403 0 5740 188 37 7 chr4 163666999 163667369 -20621293 - L1MC2 LINE L1 -1336 5008 4651 1225 250 17 111 chr4 163667748 163668325 -20620337 - L1ME3A LINE L1 -214 5956 5434 22 0 0 0 chr4 163668799 163668821 -20619841 + AT_rich Low_complexity Low_complexity 1 22 0 3992 89 9 0 chr4 163668865 163669414 -20619248 + MER41A LTR ERV1 1 554 0 3391 132 35 2 chr4 163770518 163771469 -20517193 - L1P4 LINE L1 -363 5805 4823 8821 72 0 0 chr4 163771508 163773442 -20515220 - L1PA7 LINE L1 -4 6150 4220 582 175 71 16 chr4 163774715 163774841 -20513821 - FLAM_A SINE Alu 0 133 1 674 122 0 0 chr4 163775857 163775955 -20512707 + AluS SINE Alu 2 99 -214 209 151 19 0 chr4 163775966 163776019 -20512643 + (TA)n Simple_repeat Simple_repeat 1 54 0 21 57 0 0 chr4 163776054 163776089 -20512573 + AT_rich Low_complexity Low_complexity 1 35 0 1385 326 72 95 chr4 163776771 163777120 -20511542 - L2 LINE L2 -355 2959 2603 483 196 10 0 chr4 163777120 163777222 -20511440 - L1MB3 LINE L1 -16 6167 6065 1385 326 72 95 chr4 163777222 163778296 -20510366 - L2 LINE L2 -711 2603 1475 681 191 29 17 chr4 163778296 163778469 -20510193 + L1MB3 LINE L1 6006 6180 -3 1385 326 72 95 chr4 163778469 163778617 -20510045 - L2 LINE L2 -1839 1475 1325 210 213 21 0 chr4 163781067 163781114 -20507548 + (TA)n Simple_repeat Simple_repeat 2 49 0 1632 140 68 34 chr4 163781139 163781432 -20507230 + AluSx SINE Alu 1 303 -9 624 134 81 27 chr4 163781488 163781637 -20507025 - L1MA7 LINE L1 -6 6285 6129 2021 142 73 14 chr4 163781796 163782140 -20506522 + THE1B LTR MaLR 1 364 0 203 243 143 0 chr4 163782176 163782246 -20506416 - MIR SINE MIR -135 127 48 2120 242 62 96 chr4 163782925 163784129 -20504533 + L1MA4A LINE L1 514 1858 -5351 * 8726 201 28 24 chr4 163784122 163784742 -20503920 + L1MA4A LINE L1 3601 4217 -2991 2198 144 22 11 chr4 163784742 163785102 -20503560 - THE1B LTR MaLR 0 364 1 8726 201 28 24 chr4 163785102 163786598 -20502064 + L1MA4A LINE L1 4217 5727 -1481 3916 162 10 27 chr4 163786595 163787363 -20501299 + L1MA4A LINE L1 6294 7048 -317 * 981 84 8 0 chr4 163787363 163787494 -20501168 + AluY SINE Alu 1 132 -179 1553 130 44 80 chr4 163787503 163787841 -20500821 + L1MA4A LINE L1 7036 7361 -4 278 50 25 0 chr4 163789020 163789060 -20499602 + (CA)n Simple_repeat Simple_repeat 2 42 0 324 276 32 65 chr4 163789747 163789870 -20498792 + L2 LINE L2 3150 3268 -45 1017 273 75 31 chr4 163791782 163792236 -20496426 + L1ME3 LINE L1 5446 5919 -247 587 292 50 31 chr4 163792227 163792549 -20496113 + L1ME1 LINE L1 18 345 -6078 * 2230 232 28 89 chr4 163792549 163793337 -20495325 - LTR68 LTR ERV1 0 740 1 1554 295 95 57 chr4 163793338 163793676 -20494986 + L1ME1 LINE L1 342 666 -6275 2210 104 3 7 chr4 163793676 163793975 -20494687 - AluSp SINE Alu -15 298 1 1554 295 95 57 chr4 163793975 163794763 -20493899 + L1ME1 LINE L1 666 1423 -5518 1739 138 17 17 chr4 163794763 163795052 -20493610 + AluSx SINE Alu 1 289 -23 2068 127 0 32 chr4 163795058 163795373 -20493289 + AluSx SINE Alu 7 311 -1 1554 295 95 57 chr4 163795373 163796016 -20492646 + L1ME1 LINE L1 1427 2188 -4753 322 268 157 59 chr4 163796006 163796465 -20492197 + L1ME1 LINE L1 5578 6081 -860 * 767 189 61 28 chr4 163796467 163796614 -20492048 + MLT1A1 LTR MaLR 4 160 -205 189 0 0 0 chr4 163796614 163796635 -20492027 + (TC)n Simple_repeat Simple_repeat 2 22 0 767 189 61 28 chr4 163796635 163796667 -20491995 + MLT1A1 LTR MaLR 160 189 -176 606 255 16 47 chr4 163796699 163796891 -20491771 + MLT1A1 LTR MaLR 173 358 -16 1780 281 126 11 chr4 163796904 163797687 -20490975 + L1ME1 LINE L1 6077 6949 -12 468 297 13 54 chr4 163797708 163797947 -20490715 + L1ME3 LINE L1 5900 6128 -34 221 83 28 0 chr4 163797974 163798010 -20490652 + (TG)n Simple_repeat Simple_repeat 2 38 0 463 136 0 0 chr4 163798044 163798110 -20490552 - MER2 DNA MER2_type 0 345 280 1406 194 21 25 chr4 163798159 163798443 -20490219 - MER2 DNA MER2_type -57 288 6 418 152 0 76 chr4 163798655 163798747 -20489915 - MER2 DNA MER2_type -74 271 187 285 98 0 0 chr4 163799215 163799228 -20489434 + (CA)n Simple_repeat Simple_repeat 1 54 0 285 98 0 0 chr4 163799228 163799269 -20489393 + (CA)n Simple_repeat Simple_repeat 2 42 0 718 270 75 5 chr4 163799432 163799632 -20489030 - L2 LINE L2 -2 3311 3098 200 326 35 12 chr4 163799740 163799826 -20488836 + L2 LINE L2 2316 2403 -911 24 0 0 0 chr4 163799968 163799992 -20488670 + AT_rich Low_complexity Low_complexity 1 24 0 240 35 0 0 chr4 163800689 163800718 -20487944 + (CA)n Simple_repeat Simple_repeat 2 30 0 1637 98 0 5 chr4 163801563 163801787 -20486875 - AluSg/x SINE Alu -4 308 86 1146 323 117 18 chr4 163803381 163803938 -20484724 + MLT2E LTR ERVL 1 612 -16 1061 284 132 20 chr4 163804833 163805326 -20483336 - MLT1H1 LTR MaLR -7 548 1 21 0 0 0 chr4 163807063 163807084 -20481578 + AT_rich Low_complexity Low_complexity 1 21 0 914 152 0 7 chr4 163807188 163807333 -20481329 + Tigger4(Zombi) DNA MER2_type 2 145 -2586 * 4759 163 30 7 chr4 163807331 163808172 -20480490 + Tigger4(Zombi) DNA MER2_type 1871 2730 -1 348 246 37 45 chr4 163808176 163808310 -20480352 - MLT1G LTR MaLR -68 522 390 330 261 128 21 chr4 163808383 163808571 -20480091 - L1MC/D LINE L1 -2346 5462 5255 320 247 12 12 chr4 163808804 163808885 -20479777 - MER58B DNA MER1_type 0 341 261 31 44 0 0 chr4 163809252 163809297 -20479365 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr4 163809340 163809362 -20479300 + AT_rich Low_complexity Low_complexity 1 22 0 189 74 0 0 chr4 163809888 163809915 -20478747 + (TG)n Simple_repeat Simple_repeat 2 28 0 207 100 0 0 chr4 163809956 163809986 -20478676 + (TTCTCC)n Simple_repeat Simple_repeat 4 33 0 2266 93 3 13 chr4 163809986 163810299 -20478363 - AluY SINE Alu -1 310 1 24 77 0 0 chr4 163810891 163810943 -20477719 + AT_rich Low_complexity Low_complexity 1 52 0 461 236 131 75 chr4 163811030 163811229 -20477433 - MER63A DNA MER1_type 0 210 1 3711 173 29 22 chr4 163811282 163812650 -20476012 - L1MA8 LINE L1 -262 6029 4653 4938 246 86 15 chr4 163812658 163814153 -20474509 - L1MDa LINE L1 -4440 2501 901 1391 156 291 8 chr4 163814183 163814561 -20474101 + MER31A LTR ERV1 1 485 0 1687 259 31 20 chr4 163814561 163815009 -20473653 - L1MDa LINE L1 -6061 880 428 205 156 0 0 chr4 163815079 163815111 -20473551 + (TG)n Simple_repeat Simple_repeat 1 32 0 1912 67 8 12 chr4 163815221 163815474 -20473188 + AluY SINE Alu 59 310 -1 494 315 54 22 chr4 163815899 163816121 -20472541 + MIR SINE MIR 32 260 -2 306 345 7 40 chr4 163816443 163816591 -20472071 - MIR SINE MIR -108 154 12 1542 180 9 41 chr4 163816723 163817039 -20471623 - AluJo SINE Alu -4 308 3 808 315 64 39 chr4 163818747 163819229 -20469433 - L2 LINE L2 -657 2657 2164 26 0 0 0 chr4 163819379 163819405 -20469257 + AT_rich Low_complexity Low_complexity 1 26 0 591 111 0 93 chr4 163819511 163819619 -20469043 + MER4A LTR ERV1 1 98 -566 1748 146 6 22 chr4 163819620 163819969 -20468693 + MER4A LTR ERV1 262 663 -1 898 100 115 0 chr4 163820099 163820229 -20468433 - THE1B LTR MaLR -219 145 1 227 329 95 19 chr4 163820815 163820973 -20467689 - L2 LINE L2 -2813 501 332 327 49 0 0 chr4 163821370 163821411 -20467251 + (CA)n Simple_repeat Simple_repeat 2 42 0 477 71 0 0 chr4 163821416 163821486 -20467176 + (GA)n Simple_repeat Simple_repeat 1 70 0 259 267 100 33 chr4 163822079 163822259 -20466403 - L1MDa LINE L1 -6160 263 72 670 146 183 12 chr4 163822264 163822428 -20466234 - 7SK RNA RNA 0 193 2 21 0 0 0 chr4 163822618 163822639 -20466023 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr4 163823201 163823250 -20465412 + AT_rich Low_complexity Low_complexity 1 49 0 1909 105 7 34 chr4 163824359 163824653 -20464009 + THE1B LTR MaLR 79 364 0 3894 99 0 0 chr4 163824653 163825187 -20463475 + THE1B-int LTR MaLR 1 534 -1046 416 321 139 5 chr4 163825390 163825605 -20463057 + MIR SINE MIR 5 248 -14 24 0 0 0 chr4 163825975 163825999 -20462663 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr4 163826293 163826316 -20462346 + AT_rich Low_complexity Low_complexity 1 23 0 432 215 40 164 chr4 163828321 163828619 -20460043 + LTR38B LTR ERV1 1 261 -349 290 267 5 72 chr4 163828720 163828915 -20459747 + LTR38B LTR ERV1 429 610 0 207 69 0 0 chr4 163829715 163829744 -20458918 + (GA)n Simple_repeat Simple_repeat 2 30 0 7721 113 9 1 chr4 163830171 163831246 -20457416 + THE1B-int LTR MaLR 497 1580 0 2124 99 53 34 chr4 163831246 163831601 -20457061 + THE1B LTR MaLR 1 362 -2 429 259 9 9 chr4 163831621 163831733 -20456929 + L1M4 LINE L1 32 143 -6241 2294 267 68 22 chr4 163831736 163832687 -20455975 + L1M4 LINE L1 2922 3925 -2457 1983 136 10 7 chr4 163832687 163832989 -20455673 + AluSc SINE Alu 1 303 -6 2294 267 68 22 chr4 163832989 163833066 -20455596 + L1M4 LINE L1 3925 3997 -2385 5763 133 3 2 chr4 163833081 163834030 -20454632 - L1PA12 LINE L1 -4430 3154 2201 4485 169 26 17 chr4 163834037 163834808 -20453854 - L1PA12 LINE L1 -6802 779 2 280 336 47 13 chr4 163835133 163835282 -20453380 - MIR SINE MIR -6 256 103 933 236 75 61 chr4 163835361 163835721 -20452941 - MLT1A1 LTR MaLR 0 365 1 3882 186 30 31 chr4 163837767 163838538 -20450124 - MER52A LTR ERV1 0 1755 986 21 0 0 0 chr4 163838915 163838936 -20449726 + AT_rich Low_complexity Low_complexity 1 21 0 2231 95 7 0 chr4 163839389 163839683 -20448979 - AluSc SINE Alu -13 296 1 579 305 19 62 chr4 163840711 163840967 -20447695 + MIR SINE MIR 8 252 -10 257 354 10 10 chr4 163841035 163841134 -20447528 + L2 LINE L2 3214 3312 -1 264 242 0 0 chr4 163841150 163841212 -20447450 + (TTA)n Simple_repeat Simple_repeat 1 62 0 21 0 0 0 chr4 163841291 163841312 -20447350 + AT_rich Low_complexity Low_complexity 1 21 0 240 83 0 0 chr4 163841500 163841536 -20447126 - L1MC3 LINE L1 -27 7758 7723 754 138 0 0 chr4 163841536 163841645 -20447017 + THE1B LTR MaLR 1 109 -255 333 271 0 28 chr4 163842088 163842195 -20446467 - MLT1F1 LTR MaLR -443 124 21 843 194 101 20 chr4 163842195 163842443 -20446219 - L1MC3 LINE L1 -705 7080 6813 438 204 0 11 chr4 163842774 163842862 -20445800 + L1MD3 LINE L1 6854 6940 -1055 37 69 0 0 chr4 163844089 163844161 -20444501 + AT_rich Low_complexity Low_complexity 1 72 0 188 170 43 0 chr4 163844732 163844779 -20443883 + (CATATA)n Simple_repeat Simple_repeat 3 51 0 25 51 0 0 chr4 163846482 163846521 -20442141 + AT_rich Low_complexity Low_complexity 1 39 0 782 322 120 24 chr4 163847632 163847781 -20440881 - L2 LINE L2 -405 2909 2776 222 37 0 0 chr4 163847781 163847808 -20440854 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1704 157 21 7 chr4 163847810 163848091 -20440571 - AluSx SINE Alu -15 297 13 782 322 120 24 chr4 163848091 163848479 -20440183 - L2 LINE L2 -538 2776 2317 370 309 94 7 chr4 163848482 163848631 -20440031 - MLT1J2 LTR MaLR -1 449 288 21 0 0 0 chr4 163848994 163849015 -20439647 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr4 163849655 163849690 -20438972 + AT_rich Low_complexity Low_complexity 1 35 0 201 39 0 0 chr4 163850310 163850336 -20438326 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 270 0 0 0 chr4 163850335 163850365 -20438297 + (GA)n Simple_repeat Simple_repeat 2 31 0 2299 98 3 0 chr4 163850424 163850719 -20437943 + AluSp SINE Alu 7 302 -11 3693 186 74 19 chr4 163850743 163850812 -20437850 + L1MC1 LINE L1 697 761 -5665 2444 108 8 0 chr4 163850812 163851164 -20437498 + THE1A LTR MaLR 1 355 0 3693 186 74 19 chr4 163851164 163852095 -20436567 + L1MC1 LINE L1 761 1848 -4578 1836 164 102 12 chr4 163852082 163852485 -20436177 + L1MA7 LINE L1 5850 6288 -3 * 21 36 0 0 chr4 163852485 163852513 -20436149 + AT_rich Low_complexity Low_complexity 1 28 0 3701 257 64 7 chr4 163852517 163854523 -20434139 + L1MC1 LINE L1 1824 4055 -2371 4501 188 13 16 chr4 163854523 163855455 -20433207 + L1MC1 LINE L1 5685 6613 0 2052 110 0 0 chr4 163855589 163855871 -20432791 - AluSx SINE Alu -30 282 1 412 248 126 39 chr4 163856336 163856566 -20432096 + MER92B LTR ERV1 387 636 0 2064 114 15 63 chr4 163857593 163857987 -20430675 - THE1C LTR MaLR 0 375 1 3090 128 4 12 chr4 163857988 163858472 -20430190 - THE1C-int LTR MaLR -1 1579 1100 3471 235 41 50 chr4 163858490 163859464 -20429198 - L1M1 LINE L1 -6585 980 16 22 88 0 0 chr4 163860578 163860635 -20428027 + AT_rich Low_complexity Low_complexity 1 57 0 25 51 0 0 chr4 163861382 163861421 -20427241 + AT_rich Low_complexity Low_complexity 1 39 0 1000 236 178 54 chr4 163861472 163861966 -20426696 + MER39 LTR ERV1 4 682 -25 340 298 38 15 chr4 163862067 163862198 -20426464 + MER39-int LTR ERV1 77 210 -6121 * 345 169 34 22 chr4 163862195 163862284 -20426378 + MER39-int LTR ERV1 1288 1377 -4954 315 206 0 15 chr4 163862438 163862506 -20426156 + MER34-int LTR ERV1 549 615 -5716 933 235 96 103 chr4 163862541 163863123 -20425539 + MER34-int LTR ERV1 300 595 -4341 582 203 86 6 chr4 163863126 163863289 -20425373 - L1MA8 LINE L1 -108 6183 6008 5713 201 44 66 chr4 163863289 163865186 -20423476 + MER34-int LTR ERV1 4331 6183 -148 271 222 267 11 chr4 163865215 163865305 -20423357 + MER34 LTR ERV1 6 118 -424 1006 257 88 50 chr4 163865317 163865714 -20422948 + MER39 LTR ERV1 296 707 0 345 256 22 0 chr4 163867642 163867732 -20420930 - MER92B LTR ERV1 -2 634 543 234 311 66 19 chr4 163868484 163868590 -20420072 - L2 LINE L2 -50 3222 3112 510 70 0 0 chr4 163869642 163869713 -20418949 + (TAGA)n Simple_repeat Simple_repeat 3 73 0 1970 111 4 7 chr4 163869857 163870137 -20418525 - AluSp SINE Alu -1 312 34 233 280 282 10 chr4 163871938 163872285 -20416377 - L2 LINE L2 -3 3310 2810 241 355 80 0 chr4 163872724 163872862 -20415800 + L2 LINE L2 3164 3312 -1 254 382 45 0 chr4 163872967 163873077 -20415585 - L2 LINE L2 -226 3046 2932 282 307 152 30 chr4 163873165 163873396 -20415266 - L2 LINE L2 -500 2814 2556 345 264 0 36 chr4 163873990 163874100 -20414562 - L1MC4 LINE L1 -1333 6709 6604 573 276 69 61 chr4 163874697 163874943 -20413719 + Charlie2 DNA MER1_type 77 324 -2538 590 240 143 14 chr4 163874952 163875239 -20413423 + Charlie2 DNA MER1_type 1864 2187 -675 222 105 0 0 chr4 163875260 163875298 -20413364 + (TTTTA)n Simple_repeat Simple_repeat 1 38 0 3572 247 76 25 chr4 163875298 163876917 -20411745 - L1MDb LINE L1 -3972 2434 754 181 274 49 39 chr4 163876980 163877082 -20411580 - L3 LINE CR1 -285 1292 1190 404 99 19 62 chr4 163877474 163877636 -20411026 + (TA)n Simple_repeat Simple_repeat 1 155 0 220 288 153 0 chr4 163877917 163878035 -20410627 + L2 LINE L2 3178 3313 0 2392 88 3 0 chr4 163878305 163878611 -20410051 + AluSg SINE Alu 1 307 -3 3036 197 55 27 chr4 163879091 163879766 -20408896 + L1MCa LINE L1 28 721 -5705 215 335 161 13 chr4 163879869 163880024 -20408638 + MER5A DNA MER1_type 8 185 -4 309 26 0 0 chr4 163880554 163880592 -20408070 + (CA)n Simple_repeat Simple_repeat 2 39 0 24 0 0 0 chr4 163880863 163880887 -20407775 + AT_rich Low_complexity Low_complexity 1 24 0 2554 103 8 10 chr4 163880887 163881274 -20407388 - L1PA10 LINE L1 -11 6157 5772 322 373 61 38 chr4 163883183 163883446 -20405216 - L2 LINE L2 -188 3084 2816 27 73 0 0 chr4 163883766 163883821 -20404841 + AT_rich Low_complexity Low_complexity 1 55 0 2351 154 52 0 chr4 163883885 163884288 -20404374 - MSTB LTR MaLR -2 424 1 28 0 0 0 chr4 163884432 163884460 -20404202 + AT_rich Low_complexity Low_complexity 1 28 0 2365 73 0 7 chr4 163884499 163884800 -20403862 + AluY SINE Alu 1 299 -12 2072 113 3 3 chr4 163885364 163885664 -20402998 - AluSc SINE Alu -9 300 1 1475 109 45 0 chr4 163886047 163886267 -20402395 + MER30 DNA MER1_type 1 230 0 233 200 0 0 chr4 163888451 163888496 -20400166 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 641 170 7 0 chr4 163888845 163888986 -20399676 + CT-rich Low_complexity Low_complexity 3 144 0 1723 205 20 87 chr4 163891180 163891669 -20396993 + MLT1C LTR MaLR 1 466 -1 1999 125 4 0 chr4 163891728 163892032 -20396630 + AluY SINE Alu 3 307 0 8694 26 3 0 chr4 163894155 163895954 -20392708 - L1PA3 LINE L1 -3 6152 4347 7185 35 0 0 chr4 163895954 163896810 -20391852 + L1PA3 LINE L1 3488 4343 -1803 468 35 0 0 chr4 163898307 163898365 -20390297 + (CA)n Simple_repeat Simple_repeat 1 58 0 384 22 0 0 chr4 163899085 163899130 -20389532 + (TG)n Simple_repeat Simple_repeat 2 46 0 24 32 0 0 chr4 163899517 163899548 -20389114 + AT_rich Low_complexity Low_complexity 1 31 0 367 146 10 125 chr4 163900534 163900630 -20388032 + L2 LINE L2 3221 3305 -8 777 290 75 33 chr4 163900891 163901529 -20387133 - L1M4 LINE L1 -3194 2952 2288 180 0 0 0 chr4 163901587 163901607 -20387055 + (TA)n Simple_repeat Simple_repeat 1 20 0 28 29 0 0 chr4 163901936 163901971 -20386691 + AT_rich Low_complexity Low_complexity 1 35 0 200 237 0 17 chr4 163902501 163902560 -20386102 + T-rich Low_complexity Low_complexity 2 59 0 308 221 0 15 chr4 163903460 163903528 -20385134 + MER46C DNA MER2_type 83 149 -189 375 255 0 20 chr4 163905059 163905157 -20383505 + MIR SINE MIR 57 152 -110 219 146 0 0 chr4 163905645 163905686 -20382976 + (CATA)n Simple_repeat Simple_repeat 4 44 0 1893 116 0 0 chr4 163905783 163906042 -20382620 + AluSx SINE Alu 3 261 -51 1637 102 94 0 chr4 163906047 163906303 -20382359 - LTR9B LTR ERV1 -364 280 1 30 27 0 0 chr4 163906885 163906922 -20381740 + AT_rich Low_complexity Low_complexity 1 37 0 749 357 63 38 chr4 163907904 163908708 -20379954 - L2 LINE L2 -47 3266 2432 31 26 0 0 chr4 163908995 163909033 -20379629 + AT_rich Low_complexity Low_complexity 1 38 0 201 94 0 0 chr4 163909232 163909264 -20379398 + (TAAAA)n Simple_repeat Simple_repeat 1 32 0 2357 57 40 0 chr4 163909308 163909605 -20379057 - AluY SINE Alu -2 309 1 457 320 41 20 chr4 163909992 163910299 -20378363 - LTR16C LTR ERVL -3 488 140 1783 167 88 69 chr4 163910584 163911004 -20377658 + MSTA LTR MaLR 1 428 0 22 35 0 0 chr4 163911385 163911414 -20377248 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 163911656 163911677 -20376985 + AT_rich Low_complexity Low_complexity 1 21 0 1442 197 21 12 chr4 163912191 163912475 -20376187 + L1PA13 LINE L1 4415 4704 -1442 216 0 0 0 chr4 163912475 163912499 -20376163 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1442 197 21 12 chr4 163912499 163912544 -20376118 + L1PA13 LINE L1 4704 4747 -1399 5317 139 19 11 chr4 163912545 163913591 -20375071 + L1PA13 LINE L1 5109 6162 -1 22 70 0 0 chr4 163915517 163915560 -20373102 + AT_rich Low_complexity Low_complexity 1 43 0 1875 82 8 15 chr4 163916048 163916316 -20372346 + AluY SINE Alu 44 309 -2 524 288 47 30 chr4 163916519 163916752 -20371910 + L3b LINE CR1 1231 1467 -116 21 0 0 0 chr4 163916817 163916838 -20371824 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 163917584 163917613 -20371049 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr4 163919123 163919147 -20369515 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 163919433 163919454 -20369208 + AT_rich Low_complexity Low_complexity 1 21 0 248 358 102 27 chr4 163919768 163919955 -20368707 + L2 LINE L2 352 552 -2762 1309 231 27 35 chr4 163920327 163920695 -20367967 + MLT1A1 LTR MaLR 1 365 0 734 215 164 70 chr4 163920848 163921160 -20367502 - LTR41 LTR ERVL -21 752 412 2240 150 8 14 chr4 163921459 163921825 -20366837 + THE1B LTR MaLR 1 364 0 1946 168 127 10 chr4 163921874 163922285 -20366377 - MLT1C LTR MaLR 0 467 9 253 254 14 0 chr4 163922348 163922419 -20366243 + (TA)n Simple_repeat Simple_repeat 1 72 0 252 287 42 18 chr4 163922428 163922595 -20366067 - L1ME LINE L1 -238 5883 5713 223 260 0 0 chr4 163922612 163922662 -20366000 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 413 241 76 62 chr4 163922765 163923056 -20365606 + L1ME3A LINE L1 4483 4777 -1369 3228 129 12 20 chr4 163923274 163923785 -20364877 + MER1A DNA MER1_type 23 529 0 484 280 115 13 chr4 163923785 163924167 -20364495 + L1ME3A LINE L1 4972 5392 -754 418 295 87 37 chr4 163924250 163924577 -20364085 + L1ME3A LINE L1 5483 5827 -343 783 263 28 37 chr4 163926252 163926469 -20362193 + MER58A DNA MER1_type 10 224 0 27 29 0 0 chr4 163926735 163926769 -20361893 + AT_rich Low_complexity Low_complexity 1 34 0 2500 37 7 0 chr4 163927278 163927577 -20361085 + AluY SINE Alu 1 301 -10 1143 183 78 81 chr4 163928056 163928416 -20360246 - MLT1A1 LTR MaLR -5 360 2 1197 221 62 22 chr4 163929296 163929572 -20359090 - AluJo SINE Alu -15 287 1 259 367 84 13 chr4 163929774 163930000 -20358662 + L2 LINE L2 2280 2521 -793 2126 162 0 29 chr4 163930061 163930437 -20358225 + MLT1A1 LTR MaLR 1 365 0 4131 181 19 20 chr4 163930816 163931610 -20357052 + MER54B LTR ERVL 1 793 0 31 26 0 0 chr4 163931633 163931671 -20356991 + AT_rich Low_complexity Low_complexity 1 38 0 183 292 56 11 chr4 163931683 163931772 -20356890 - L2 LINE L2 -50 3263 3171 979 186 154 8 chr4 163931843 163932096 -20356566 + MLT2C2 LTR ERVL 1 290 -174 445 297 23 59 chr4 163933078 163933189 -20355473 - LTR16C LTR ERVL 0 491 378 1890 101 8 11 chr4 163933189 163933457 -20355205 + AluSc SINE Alu 37 303 -6 445 297 23 59 chr4 163933457 163933601 -20355061 - LTR16C LTR ERVL -113 378 245 7383 178 31 8 chr4 163933644 163934958 -20353704 + Ricksha_c DNA DNA 27 1371 -675 2450 151 6 52 chr4 163934958 163935443 -20353219 + L1MA5 LINE L1 5695 6157 -143 288 294 34 7 chr4 163935581 163935727 -20352935 - L1M4 LINE L1 -1819 4327 4178 263 263 0 0 chr4 163935768 163935825 -20352837 - MLT1J2 LTR MaLR -268 182 126 32 26 0 0 chr4 163936102 163936141 -20352521 + AT_rich Low_complexity Low_complexity 1 39 0 245 241 76 0 chr4 163936982 163937061 -20351601 - L1MC4 LINE L1 -1344 6698 6614 204 267 0 0 chr4 163937061 163937106 -20351556 + (TA)n Simple_repeat Simple_repeat 1 45 0 215 274 0 0 chr4 163938214 163938276 -20350386 + GA-rich Low_complexity Low_complexity 1 62 0 981 273 144 53 chr4 163939165 163939258 -20349404 - HAL1 LINE L1 0 2507 2424 2160 173 85 40 chr4 163939258 163939778 -20348884 + MER67A LTR ERV1 1 543 0 981 273 144 53 chr4 163939778 163940134 -20348528 - HAL1 LINE L1 -83 2424 2102 2131 115 3 10 chr4 163940134 163940439 -20348223 - AluSg SINE Alu -7 303 1 981 273 144 53 chr4 163940439 163940879 -20347783 - HAL1 LINE L1 -405 2102 1536 236 302 127 0 chr4 163940870 163940996 -20347666 - L1MCc LINE L1 -5990 433 292 * 339 85 0 0 chr4 163940996 163941043 -20347619 + (CA)n Simple_repeat Simple_repeat 2 48 0 185 159 23 0 chr4 163941043 163941087 -20347575 + (TA)n Simple_repeat Simple_repeat 1 45 0 390 143 33 0 chr4 163941116 163941207 -20347455 + (TA)n Simple_repeat Simple_repeat 1 94 0 895 131 36 4 chr4 163941307 163941528 -20347134 + MER4-int LTR ERV1 508 814 -5784 282 102 136 0 chr4 163941544 163941603 -20347059 + MER4-int LTR ERV1 687 753 -5845 2903 136 84 143 chr4 163941624 163942980 -20345682 - pTR5 LTR ERV1 0 1522 6 * 6846 124 59 14 chr4 163942979 163944540 -20344122 + MER4-int LTR ERV1 836 2495 -4103 1170 161 93 4 chr4 163944540 163944776 -20343886 - LTR8 LTR ERV1 -434 257 1 3612 146 77 39 chr4 163944777 163945692 -20342970 + MER4-int LTR ERV1 2738 3686 -2912 * 7822 112 30 15 chr4 163945686 163946968 -20341694 + MER4-int LTR ERV1 3837 5138 -1460 2854 189 37 5 chr4 163948870 163949432 -20339230 - LTR22 LTR ERVK 0 580 1 813 214 20 63 chr4 163950248 163950485 -20338177 - MLT1D LTR MaLR 0 505 318 1006 331 97 12 chr4 163951856 163951901 -20336761 + L2 LINE L2 2508 2548 -765 1674 186 36 19 chr4 163951901 163952261 -20336401 - MER47A DNA MER2_type 0 366 1 1006 331 97 12 chr4 163952261 163952790 -20335872 + L2 LINE L2 2548 3143 -170 279 0 0 0 chr4 163952852 163952883 -20335779 + (TG)n Simple_repeat Simple_repeat 1 31 0 * 345 24 0 0 chr4 163952882 163952924 -20335738 + (GA)n Simple_repeat Simple_repeat 1 42 0 435 330 174 29 chr4 163953939 163954103 -20334559 - L2 LINE L2 0 3313 3174 243 0 0 0 chr4 163954103 163954130 -20334532 + (TA)n Simple_repeat Simple_repeat 1 27 0 435 330 174 29 chr4 163954130 163954762 -20333900 - L2 LINE L2 -139 3174 2369 1288 204 8 12 chr4 163954864 163955119 -20333543 + AluJb SINE Alu 29 282 -30 239 240 48 29 chr4 163955233 163955337 -20333325 - L1ME LINE L1 -710 5460 5355 277 211 14 70 chr4 163955363 163955505 -20333157 - L1ME LINE L1 -839 5307 5174 1412 199 57 7 chr4 163955587 163955868 -20332794 - AluJb SINE Alu -17 295 1 276 313 77 16 chr4 163956206 163956452 -20332210 - L1ME LINE L1 -1476 4670 4410 2598 112 16 0 chr4 163956624 163957007 -20331655 - L1PA10 LINE L1 -4 6164 5776 9166 156 16 8 chr4 163957107 163958972 -20329690 - L1PA10 LINE L1 -573 5595 3718 24 32 0 0 chr4 163959350 163959381 -20329281 + AT_rich Low_complexity Low_complexity 1 31 0 460 283 116 6 chr4 163959996 163960169 -20328493 - MIR SINE MIR 0 262 71 15489 185 34 30 chr4 163960891 163964252 -20324410 + L1P LINE L1 1750 5124 -1022 5608 158 12 13 chr4 163964225 163965768 -20322894 + L1PB1 LINE L1 4600 6150 -1 * 1675 190 30 0 chr4 163965940 163966235 -20322427 + AluJb SINE Alu 1 304 -8 190 73 73 18 chr4 163966300 163966355 -20322307 + (TA)n Simple_repeat Simple_repeat 1 58 0 46 61 0 10 chr4 163967791 163967815 -20320847 + AT_rich Low_complexity Low_complexity 1 24 -74 2085 121 3 16 chr4 163967815 163968122 -20320540 + AluSx SINE Alu 1 303 -9 46 61 0 10 chr4 163968122 163968196 -20320466 + AT_rich Low_complexity Low_complexity 24 98 0 249 195 24 85 chr4 163969160 163969242 -20319420 + L1MCa LINE L1 2007 2083 -4343 198 191 0 0 chr4 163969260 163969302 -20319360 + (CATATA)n Simple_repeat Simple_repeat 4 45 0 1087 321 108 15 chr4 163969326 163970259 -20318403 - Charlie7 DNA MER1_type -1540 1072 53 225 252 0 0 chr4 163970355 163970458 -20318204 + (CA)n Simple_repeat Simple_repeat 2 104 0 375 278 58 75 chr4 163970949 163971413 -20317249 + L1ME LINE L1 4875 5330 -816 247 290 24 24 chr4 163971459 163971583 -20317079 + L1ME LINE L1 5412 5535 -629 23 0 0 29 chr4 163971630 163971645 -20317017 + AT_rich Low_complexity Low_complexity 1 15 -18 1872 132 75 35 chr4 163971645 163971993 -20316669 + THE1B LTR MaLR 1 362 -2 23 0 0 29 chr4 163971993 163972011 -20316651 + AT_rich Low_complexity Low_complexity 15 33 0 476 296 96 17 chr4 163972011 163972241 -20316421 + L1ME LINE L1 5548 5795 -367 2144 214 93 39 chr4 163972247 163972867 -20315795 - Tigger6b DNA MER2_type 0 1597 944 1271 240 3 23 chr4 163972932 163973236 -20315426 - MLT1D LTR MaLR 0 505 208 1030 211 24 0 chr4 163973302 163973510 -20315152 - MLT1D LTR MaLR -292 213 1 2688 216 25 31 chr4 163973510 163974148 -20314514 - Tigger6b DNA MER2_type -963 634 1 435 337 24 12 chr4 163974174 163974343 -20314319 + MIR3 SINE MIR 37 207 -1 24 0 0 0 chr4 163975948 163975972 -20312690 + AT_rich Low_complexity Low_complexity 1 24 0 7820 189 16 40 chr4 163976408 163977084 -20311578 + L1PB4 LINE L1 3355 4046 -2110 5169 99 4 1 chr4 163977084 163977811 -20310851 + L1PA8 LINE L1 5438 6166 -6 7820 189 16 40 chr4 163977811 163980005 -20308657 + L1PB4 LINE L1 4046 6154 -2 25 65 0 0 chr4 163980164 163980210 -20308452 + AT_rich Low_complexity Low_complexity 1 46 0 2281 69 0 7 chr4 163981614 163981905 -20306757 - AluY SINE Alu -16 295 7 688 138 39 23 chr4 163982106 163982236 -20306426 - AluY SINE Alu -179 132 1 1364 262 94 48 chr4 163982351 163982916 -20305746 + L1M4 LINE L1 8 598 -5944 2432 257 43 35 chr4 163982920 163983899 -20304763 + L1M4 LINE L1 1004 1990 -4656 31 0 0 0 chr4 163983963 163983994 -20304668 + AT_rich Low_complexity Low_complexity 1 31 0 1059 134 5 26 chr4 163983994 163984188 -20304474 - L1PB1 LINE L1 -3 6148 5959 6562 67 16 0 chr4 163984237 163985588 -20303074 - L1PA7 LINE L1 -1 6153 4832 1816 116 40 20 chr4 163985590 163985776 -20302886 - L1PB1 LINE L1 -178 5973 5777 408 40 0 0 chr4 163985776 163985826 -20302836 + (TA)n Simple_repeat Simple_repeat 2 51 0 1816 116 40 20 chr4 163985826 163985941 -20302721 - L1PB1 LINE L1 -374 5777 5666 466 229 8 0 chr4 163985939 163986061 -20302601 + L1M4 LINE L1 1973 2095 -4551 * 1895 266 62 10 chr4 163986082 163987239 -20301423 + L1M4 LINE L1 2213 3437 -3207 * 3525 137 40 3 chr4 163987224 163987817 -20300845 - L1PA16 LINE L1 -289 5877 5263 229 176 0 0 chr4 163987844 163987895 -20300767 + L1MC4 LINE L1 6652 6702 -1340 1274 201 66 28 chr4 163987945 163988011 -20300651 + L1M4 LINE L1 5605 5667 -1005 2221 104 0 7 chr4 163988011 163988310 -20300352 + AluSg SINE Alu 1 297 -13 1274 201 66 28 chr4 163988310 163988761 -20299901 + L1M4 LINE L1 5667 6139 -533 6414 146 52 14 chr4 163988767 163989951 -20298711 - Tigger3b DNA MER2_type 0 1231 3 414 134 0 0 chr4 163990876 163990943 -20297719 + MLT1B LTR MaLR 322 388 -2 1289 304 150 17 chr4 163990944 163991186 -20297476 - L2 LINE L2 -1355 1959 1750 1570 156 55 89 chr4 163991186 163991380 -20297282 + MLT1B LTR MaLR 1 175 -215 1913 145 0 7 chr4 163991380 163991676 -20296986 + AluSq SINE Alu 1 294 -19 1570 156 55 89 chr4 163991676 163991885 -20296777 + MLT1B LTR MaLR 175 390 0 1289 304 150 17 chr4 163991885 163992330 -20296332 - L2 LINE L2 -1564 1750 1181 207 324 0 15 chr4 163993101 163993169 -20295493 - L3 LINE CR1 -127 1450 1384 25 31 0 0 chr4 163993725 163993757 -20294905 + AT_rich Low_complexity Low_complexity 1 32 0 324 309 166 11 chr4 163993824 163993999 -20294663 + MIR SINE MIR 49 250 -12 414 338 52 63 chr4 163994444 163994713 -20293949 + L2 LINE L2 713 978 -2336 587 259 119 7 chr4 163995138 163995431 -20293231 + MER114 LTR ERV 1 326 -322 8445 205 149 9 chr4 163996333 163998263 -20290399 + L1MA1 LINE L1 14 2214 -5351 5836 213 47 20 chr4 163998240 163999765 -20288897 + L1MA1 LINE L1 3606 5172 -2393 * 6790 130 26 12 chr4 163999764 164001183 -20287479 + L1MA1 LINE L1 6274 7717 -4 299 324 57 43 chr4 164001306 164001794 -20286868 + HAL1b LINE L1 47 541 -807 212 292 0 31 chr4 164002362 164002427 -20286235 - L2 LINE L2 -1 3312 3250 729 301 144 17 chr4 164003482 164004051 -20284611 - L2 LINE L2 -133 3180 2537 345 221 12 35 chr4 164004063 164004149 -20284513 + MER69 DNA AcHobo 1 84 -93 1095 255 53 0 chr4 164004232 164004534 -20284128 + MER69 DNA AcHobo 509 826 -400 1184 254 65 63 chr4 164004537 164005187 -20283475 + MER69 DNA AcHobo 1863 2513 -13 1030 276 101 6 chr4 164005187 164005513 -20283149 - L2 LINE L2 -778 2536 2180 6246 141 52 42 chr4 164005545 164006092 -20282570 + Tigger3b DNA MER2_type 16 557 -2471 2102 105 24 3 chr4 164006092 164006388 -20282274 - AluSp SINE Alu -11 302 1 6246 141 52 42 chr4 164006388 164007043 -20281619 + Tigger3b DNA MER2_type 557 1229 -2 728 313 43 18 chr4 164007053 164007331 -20281331 - L2 LINE L2 -1007 2307 2023 447 291 101 10 chr4 164007392 164007591 -20281071 - LTR52 LTR ERVL -157 264 48 543 278 273 14 chr4 164007599 164008024 -20280638 - L2 LINE L2 -1472 1842 1308 246 32 0 0 chr4 164008197 164008228 -20280434 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 362 340 121 38 chr4 164009795 164010160 -20278502 + L1ME LINE L1 5290 5684 -437 201 195 0 0 chr4 164010416 164010457 -20278205 + (TA)n Simple_repeat Simple_repeat 2 42 0 273 283 0 80 chr4 164010607 164010639 -20278023 - L2 LINE L2 -4 3309 3276 255 61 0 0 chr4 164010639 164010672 -20277990 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 273 283 0 80 chr4 164010672 164010752 -20277910 - L2 LINE L2 -37 3276 3206 671 383 111 24 chr4 164010991 164011667 -20276995 - L2 LINE L2 -411 2903 2169 278 295 18 45 chr4 164011705 164011817 -20276845 - MER5A DNA MER1_type -34 155 47 308 303 98 23 chr4 164012147 164012586 -20276076 + L1M4 LINE L1 2786 3257 -2889 42 20 0 0 chr4 164012731 164012780 -20275882 + AT_rich Low_complexity Low_complexity 1 49 0 426 20 0 0 chr4 164014836 164014887 -20273775 + (GA)n Simple_repeat Simple_repeat 2 52 0 1492 174 125 20 chr4 164015118 164015423 -20273239 - MER1B DNA MER1_type 0 337 1 261 0 0 0 chr4 164015439 164015468 -20273194 + (TG)n Simple_repeat Simple_repeat 1 29 0 240 218 18 0 chr4 164015630 164015685 -20272977 + MLT1E2 LTR MaLR 98 153 -471 2157 90 3 0 chr4 164015789 164016079 -20272583 + AluY SINE Alu 21 311 0 1560 239 31 18 chr4 164016088 164016477 -20272185 + MLT1E2 LTR MaLR 233 626 0 12029 220 47 11 chr4 164016533 164020012 -20268650 + L1PA13 LINE L1 1 3842 -2955 2139 138 34 0 chr4 164020012 164020361 -20268301 - THE1B LTR MaLR -2 362 2 12029 220 47 11 chr4 164020361 164021185 -20267477 + L1PA13 LINE L1 3842 4634 -2163 5464 109 41 11 chr4 164021190 164022282 -20266380 + L1PA13 LINE L1 5284 6342 -472 2205 124 32 11 chr4 164022282 164022630 -20266032 + THE1A LTR MaLR 1 355 0 10928 114 12 3 chr4 164022630 164024195 -20264467 + THE1A-int LTR MaLR 1 1580 0 2202 130 11 8 chr4 164024195 164024549 -20264113 + THE1A LTR MaLR 1 355 0 5464 109 41 11 chr4 164024549 164024952 -20263710 + L1PA13 LINE L1 6341 6810 -4 21 0 0 0 chr4 164024952 164024973 -20263689 + AT_rich Low_complexity Low_complexity 1 21 0 28 48 0 0 chr4 164025007 164025049 -20263613 + AT_rich Low_complexity Low_complexity 1 42 0 32 75 0 0 chr4 164025268 164025335 -20263327 + AT_rich Low_complexity Low_complexity 1 67 0 330 216 11 22 chr4 164025620 164025801 -20262861 + (TA)n Simple_repeat Simple_repeat 2 180 0 231 351 44 0 chr4 164026047 164026161 -20262501 + L1ME LINE L1 5531 5649 -472 608 233 60 87 chr4 164026402 164026668 -20261994 + L1MC3 LINE L1 6753 7011 -774 1502 145 74 84 chr4 164026668 164027047 -20261615 + THE1C LTR MaLR 1 375 0 7005 143 68 8 chr4 164027047 164028216 -20260446 + THE1C-int LTR MaLR 1 1240 -340 7178 90 10 43 chr4 164028235 164029328 -20259334 - MER11C LTR ERVK -14 1057 1 849 159 0 55 chr4 164029328 164029491 -20259171 + THE1C-int LTR MaLR 1237 1390 -190 374 208 13 0 chr4 164029509 164029586 -20259076 + L1MC3 LINE L1 7399 7476 -309 1411 191 14 49 chr4 164029598 164029886 -20258776 + AluJb SINE Alu 14 291 -21 420 130 0 0 chr4 164029886 164029955 -20258707 + (GGAA)n Simple_repeat Simple_repeat 1 69 0 1479 172 40 7 chr4 164029957 164030259 -20258403 + L1MC3 LINE L1 7466 7777 -8 203 220 20 0 chr4 164030334 164030384 -20258278 + (TTATA)n Simple_repeat Simple_repeat 4 54 0 5019 127 36 5 chr4 164030514 164031344 -20257318 - L1MA5A LINE L1 -1 6296 5441 25 31 0 0 chr4 164032934 164032966 -20255696 + AT_rich Low_complexity Low_complexity 1 32 0 40 94 0 0 chr4 164033118 164033235 -20255427 + AT_rich Low_complexity Low_complexity 1 117 0 7082 52 3 3 chr4 164033477 164034559 -20254103 - L1PA5 LINE L1 0 6154 5070 11979 48 7 2 chr4 164034559 164036070 -20252592 + L1PA5 LINE L1 3574 5091 -1055 201 240 20 0 chr4 164036664 164036714 -20251948 + (TCCA)n Simple_repeat Simple_repeat 4 54 0 211 315 43 22 chr4 164036754 164036846 -20251816 + L2 LINE L2 3220 3313 0 862 234 114 88 chr4 164038099 164038634 -20250028 + MER34C LTR ERV1 22 570 -15 3651 171 28 42 chr4 164038952 164039673 -20248989 + MER50 LTR ERV1 1 711 -23 2498 232 101 39 chr4 164039716 164039962 -20248700 + MER21B LTR ERV1 19 249 -614 2264 51 7 34 chr4 164039962 164040258 -20248404 + AluY SINE Alu 12 299 -12 2498 232 101 39 chr4 164040258 164040797 -20247865 + MER21B LTR ERV1 249 852 -11 300 272 78 44 chr4 164040848 164041028 -20247634 + MIR SINE MIR 66 251 -11 23 0 0 0 chr4 164041108 164041131 -20247531 + AT_rich Low_complexity Low_complexity 1 23 0 1034 196 25 55 chr4 164041192 164041427 -20247235 + MER92B LTR ERV1 1 228 -408 1960 170 6 117 chr4 164041432 164041920 -20246742 - MER31A LTR ERV1 0 485 33 386 218 17 92 chr4 164041972 164042146 -20246516 + MER92B LTR ERV1 274 434 -202 5647 237 48 37 chr4 164092171 164093755 -20194907 - L1MDa LINE L1 -4918 1622 21 28 29 0 0 chr4 164094009 164094044 -20194618 + AT_rich Low_complexity Low_complexity 1 35 0 1743 162 40 7 chr4 164094411 164094713 -20193949 + AluSx SINE Alu 1 312 0 389 329 50 7 chr4 164095421 164095644 -20193018 - L1MEc LINE L1 -5065 1140 939 23 33 0 0 chr4 164095823 164095853 -20192809 + AT_rich Low_complexity Low_complexity 1 30 0 267 31 0 0 chr4 164096117 164096149 -20192513 + (CA)n Simple_repeat Simple_repeat 1 32 0 1637 216 72 59 chr4 164096994 164097536 -20191126 - MER77 LTR ERV1 -4 601 53 391 285 108 38 chr4 164097651 164098068 -20190594 - HAL1b LINE L1 -709 639 194 264 59 0 0 chr4 164098615 164098649 -20190013 + (TG)n Simple_repeat Simple_repeat 1 34 0 285 289 52 80 chr4 164099022 164099238 -20189424 - L1ME3 LINE L1 -26 6136 5928 352 335 66 31 chr4 164099501 164099788 -20188874 - L1MEc LINE L1 -6031 365 69 2083 149 91 8 chr4 164099924 164100319 -20188343 + MSTA LTR MaLR 1 428 0 21 0 0 0 chr4 164101636 164101657 -20187005 + AT_rich Low_complexity Low_complexity 1 21 0 1975 115 3 62 chr4 164102868 164103190 -20185472 - AluSq SINE Alu -10 303 1 2551 182 114 23 chr4 164103830 164104479 -20184183 - MER67C LTR ERV1 0 710 3 295 317 54 78 chr4 164106288 164106493 -20182169 - MIR SINE MIR -31 231 32 29 47 0 0 chr4 164106589 164106632 -20182030 + AT_rich Low_complexity Low_complexity 1 43 0 292 311 92 0 chr4 164107018 164107137 -20181525 - MLT1I LTR MaLR -236 173 44 331 212 0 0 chr4 164107245 164107311 -20181351 - Tigger1 DNA MER2_type -2 2416 2351 234 0 0 0 chr4 164107324 164107350 -20181312 + (TG)n Simple_repeat Simple_repeat 1 26 0 234 315 110 8 chr4 164107867 164107994 -20180668 + MIR SINE MIR 9 148 -114 902 180 85 10 chr4 164107994 164108194 -20180468 - Tigger1 DNA MER2_type 0 2418 2204 884 216 22 17 chr4 164108162 164108343 -20180319 - Tigger1 DNA MER2_type -2236 182 1 * 725 365 66 40 chr4 164108347 164108485 -20180177 - L2 LINE L2 -574 2740 2607 2470 186 148 20 chr4 164108485 164109183 -20179479 - LTR48 LTR ERV1 0 787 1 725 365 66 40 chr4 164109183 164109743 -20178919 - L2 LINE L2 -707 2607 2024 258 32 0 0 chr4 164111015 164111046 -20177616 + (TG)n Simple_repeat Simple_repeat 1 31 0 23 0 0 0 chr4 164111476 164111499 -20177163 + AT_rich Low_complexity Low_complexity 1 23 0 1332 197 128 46 chr4 164111713 164112036 -20176626 - MSTD LTR MaLR 0 396 38 1919 138 7 0 chr4 164112036 164112326 -20176336 - AluSx SINE Alu -20 292 1 1332 197 128 46 chr4 164112326 164112368 -20176294 - MSTD LTR MaLR -358 38 1 580 312 115 16 chr4 164112537 164112790 -20175872 + MLT1I LTR MaLR 89 366 -43 28 0 0 0 chr4 164112839 164112867 -20175795 + AT_rich Low_complexity Low_complexity 1 28 0 1623 233 76 9 chr4 164112963 164113383 -20175279 - MER39 LTR ERV1 0 707 260 229 311 78 11 chr4 164113457 164113547 -20175115 - MLT1L LTR MaLR -517 98 3 335 305 46 36 chr4 164114380 164114682 -20173980 + L1MC/D LINE L1 4725 5029 -1117 1253 278 32 40 chr4 164114910 164115438 -20173224 + L1MC/D LINE L1 5263 5786 -2022 431 356 84 29 chr4 164115457 164116007 -20172655 + L2 LINE L2 2113 2692 -622 714 230 0 6 chr4 164116420 164116585 -20172077 - L1MC/D LINE L1 -712 5530 5367 * 904 274 2 44 chr4 164116576 164116981 -20171681 + L1M4 LINE L1 3364 3751 -2395 * 1337 268 11 55 chr4 164116978 164117455 -20171207 - L1ME2 LINE L1 -335 5898 5443 435 243 55 26 chr4 164117479 164117750 -20170912 - L1ME2 LINE L1 -4065 2331 1997 719 232 7 0 chr4 164117779 164117921 -20170741 - AluJo SINE Alu -129 183 41 426 291 192 47 chr4 164119018 164119399 -20169263 - MLT1J1 LTR MaLR 0 446 11 1815 194 31 16 chr4 164119554 164119936 -20168726 + MLT1B LTR MaLR 2 389 -1 1610 175 0 58 chr4 164119973 164120281 -20168381 - AluJb SINE Alu -21 291 2 467 289 63 0 chr4 164121088 164121230 -20167432 - MIR SINE MIR -110 152 2 1878 124 13 57 chr4 164121446 164121760 -20166902 + AluSp SINE Alu 1 300 -13 1570 153 17 0 chr4 164122397 164122684 -20165978 + L1MA8 LINE L1 6000 6291 0 2082 134 3 0 chr4 164123028 164123319 -20165343 - AluSx SINE Alu -20 292 1 2091 186 149 145 chr4 164124034 164124454 -20164208 - L1MC3 LINE L1 -160 7625 7208 328 253 40 10 chr4 164124454 164124553 -20164109 - MLT1F1 LTR MaLR -442 125 24 2091 186 149 145 chr4 164124553 164124697 -20163965 - L1MC3 LINE L1 -577 7208 7066 2284 92 3 3 chr4 164124697 164125001 -20163661 + AluSx SINE Alu 1 304 -8 2091 186 149 145 chr4 164125001 164125304 -20163358 - L1MC3 LINE L1 -719 7066 6655 185 286 107 0 chr4 164125683 164125739 -20162923 - MIR SINE MIR -87 121 60 21 0 0 0 chr4 164126643 164126664 -20161998 + AT_rich Low_complexity Low_complexity 1 21 0 32 81 0 0 chr4 164127507 164127581 -20161081 + AT_rich Low_complexity Low_complexity 1 74 0 22 35 0 0 chr4 164127676 164127705 -20160957 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 164129358 164129379 -20159283 + AT_rich Low_complexity Low_complexity 1 21 0 189 391 69 0 chr4 164130276 164130363 -20158299 + L2 LINE L2 3148 3240 -32 1721 131 27 8 chr4 164131048 164131308 -20157354 - AluSx SINE Alu -26 286 22 252 346 135 0 chr4 164131463 164131567 -20157095 + L2 LINE L2 3145 3262 -10 24 0 0 0 chr4 164131957 164131981 -20156681 + AT_rich Low_complexity Low_complexity 1 24 0 233 273 23 81 chr4 164134303 164134475 -20154187 + L1MC4a LINE L1 265 426 -5997 398 303 30 30 chr4 164134540 164134705 -20153957 - L1MEc LINE L1 -6120 276 112 821 310 75 51 chr4 164134796 164136336 -20152326 + L1MC4a LINE L1 4503 6078 -863 41829 38 24 3 chr4 164136393 164142415 -20146247 + L1PA3 LINE L1 1 6151 -4 23 0 0 0 chr4 164142415 164142438 -20146224 + AT_rich Low_complexity Low_complexity 1 23 0 6503 232 61 57 chr4 164142474 164144902 -20143760 + L1MC4a LINE L1 6164 8602 -1 180 135 0 0 chr4 164146641 164146678 -20141984 + (TTAA)n Simple_repeat Simple_repeat 4 40 0 238 250 14 14 chr4 164147072 164147144 -20141518 - MER69 DNA AcHobo -13 2513 2442 27 81 0 0 chr4 164147159 164147221 -20141441 + AT_rich Low_complexity Low_complexity 1 62 0 785 319 30 11 chr4 164147376 164147646 -20141016 - MER69 DNA AcHobo -1918 608 334 907 192 21 21 chr4 164147655 164147848 -20140814 + LTR41 LTR ERVL 3 195 -578 2271 113 29 6 chr4 164147869 164148214 -20140448 - L1PA13 LINE L1 -23 6140 5788 263 251 191 64 chr4 164148537 164148772 -20139890 + LTR41 LTR ERVL 503 767 -6 397 304 82 18 chr4 164148774 164148945 -20139717 - MER69 DNA AcHobo -887 339 158 239 143 41 0 chr4 164148971 164149020 -20139642 + (TATG)n Simple_repeat Simple_repeat 2 52 0 322 260 0 62 chr4 164149022 164149118 -20139544 + L1MC4 LINE L1 6614 6703 -1339 249 211 0 0 chr4 164149123 164149180 -20139482 + (TATG)n Simple_repeat Simple_repeat 2 58 0 237 83 0 0 chr4 164149211 164149247 -20139415 + (CA)n Simple_repeat Simple_repeat 1 36 0 880 291 9 0 chr4 164149363 164149576 -20139086 + MER58A DNA MER1_type 4 218 -6 271 286 0 0 chr4 164151881 164151944 -20136718 + GA-rich Low_complexity Low_complexity 1 63 0 427 320 8 0 chr4 164152193 164152315 -20136347 - L2 LINE L2 -1 3312 3190 8508 208 57 32 chr4 164152651 164154816 -20133846 - Cheshire DNA MER1_type -6 2414 195 2492 96 126 0 chr4 164154817 164155215 -20133447 + LTR7 LTR ERV1 1 448 -2 17410 96 35 19 chr4 164155217 164158033 -20130629 + HERVH LTR ERV1 1 2995 -4718 6107 88 2 3 chr4 164158012 164158866 -20129796 + HERVH LTR ERV1 3140 3992 -3721 * 4302 144 0 8 chr4 164158869 164159536 -20129126 + HERVH LTR ERV1 4488 5149 -2564 1337 130 23 0 chr4 164159537 164159752 -20128910 + HERVH LTR ERV1 5600 5819 -1894 2336 103 48 13 chr4 164159752 164160129 -20128533 + HERVH LTR ERV1 7324 7713 0 2593 78 126 0 chr4 164160131 164160527 -20128135 + LTR7 LTR ERV1 3 448 -2 590 214 121 6 chr4 164160530 164160703 -20127959 - Cheshire DNA MER1_type -2223 197 5 254 256 50 21 chr4 164160863 164160989 -20127673 - L1MCc LINE L1 -4871 2060 1828 539 302 61 16 chr4 164161063 164161469 -20127193 - L1MCc LINE L1 -4958 1465 1181 1157 252 91 13 chr4 164162981 164163366 -20125296 - L1MD2 LINE L1 -266 6093 5679 3006 140 117 50 chr4 164163368 164163990 -20124672 - MER4A LTR ERV1 0 664 1 1275 235 99 19 chr4 164163993 164164581 -20124081 - L1MD2 LINE L1 -501 5665 5040 641 200 89 48 chr4 164164656 164164969 -20123693 + L1ME1 LINE L1 5817 6332 -2 24 0 0 0 chr4 164165189 164165213 -20123449 + AT_rich Low_complexity Low_complexity 1 24 0 2555 213 55 15 chr4 164165549 164166542 -20122120 + LTR28 LTR ERV1 1 1020 0 750 155 117 132 chr4 164166764 164167105 -20121557 - MER44D DNA MER2_type -3 606 1 2005 93 3 90 chr4 164167658 164167981 -20120681 + AluSg1 SINE Alu 3 297 -12 2327 159 23 51 chr4 164168226 164168425 -20120237 + MSTB LTR MaLR 4 207 -219 1701 103 141 8 chr4 164168425 164168687 -20119975 + AluSg SINE Alu 3 299 -11 2327 159 23 51 chr4 164168687 164168922 -20119740 + MSTB LTR MaLR 207 426 0 2367 57 33 17 chr4 164169631 164169931 -20118731 + AluY SINE Alu 1 305 -6 200 320 300 0 chr4 164170104 164170204 -20118458 - L2 LINE L2 -569 2745 2616 28 0 0 0 chr4 164170804 164170832 -20117830 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 164170882 164170905 -20117757 + AT_rich Low_complexity Low_complexity 1 23 0 2372 55 0 3 chr4 164171146 164171439 -20117223 - AluY SINE Alu -19 292 1 208 209 0 0 chr4 164173215 164173258 -20115404 - L2 LINE L2 -9 3304 3262 3540 186 27 9 chr4 164173394 164174826 -20113836 + L1PBa LINE L1 6 1683 -5180 3991 48 19 0 chr4 164174826 164175307 -20113355 - LTR2B LTR ERV1 0 490 1 3540 186 27 9 chr4 164175307 164175748 -20112914 + L1PBa LINE L1 1683 2114 -4749 366 179 0 24 chr4 164175746 164175830 -20112832 + L1 LINE L1 3278 3359 -3503 * 502 125 0 0 chr4 164175830 164175902 -20112760 - AluS SINE Alu -241 72 1 1429 163 63 48 chr4 164175902 164176233 -20112429 - MER61C LTR ERV1 -98 336 1 226 221 15 0 chr4 164176662 164176730 -20111932 - L1ME4a LINE L1 -2 6119 6051 419 255 129 76 chr4 164177213 164177476 -20111186 - L2 LINE L2 -23 3290 3014 354 255 53 11 chr4 164177557 164177651 -20111011 - L2 LINE L2 -36 3277 3180 830 96 14 14 chr4 164177665 164177811 -20110851 + (GAAA)n Simple_repeat Simple_repeat 1 146 0 658 335 186 25 chr4 164177821 164178431 -20110231 - L2 LINE L2 -238 3075 2351 597 284 45 67 chr4 164178590 164179083 -20109579 + L1MEc LINE L1 66 547 -5849 2423 265 65 84 chr4 164179085 164180020 -20108642 + L1M4 LINE L1 2510 3461 -2685 1852 174 0 0 chr4 164180020 164180319 -20108343 + AluJb SINE Alu 1 299 -13 2423 265 65 84 chr4 164180319 164181760 -20106902 + L1M4 LINE L1 3461 4841 -1305 1390 247 44 22 chr4 164181925 164182338 -20106324 - MLT1C LTR MaLR -4 463 42 216 0 0 0 chr4 164183614 164183638 -20105024 + (TA)n Simple_repeat Simple_repeat 2 25 0 270 176 0 0 chr4 164183709 164183760 -20104902 + (TG)n Simple_repeat Simple_repeat 2 52 0 301 322 0 0 chr4 164183819 164183906 -20104756 + L1MC4 LINE L1 6616 6702 -1340 681 240 0 0 chr4 164183909 164184084 -20104578 + (TA)n Simple_repeat Simple_repeat 1 175 0 345 303 0 0 chr4 164184087 164184176 -20104486 + L1MC4 LINE L1 6614 6702 -1340 309 252 8 15 chr4 164184114 164184240 -20104422 - L1MC4 LINE L1 -1333 6989 2006 * 311 299 23 0 chr4 164184233 164184320 -20104342 - L1MC4 LINE L1 -1339 6703 6615 * 333 263 0 53 chr4 164184307 164184402 -20104260 + L1MC4 LINE L1 6614 6703 -1339 2812 164 23 145 chr4 164184715 164185249 -20103413 + L1MCa LINE L1 21 407 -6019 2230 89 7 0 chr4 164185249 164185555 -20103107 - AluSx SINE Alu 0 308 1 2812 164 23 145 chr4 164185555 164185904 -20102758 + L1MCa LINE L1 407 797 -5629 3045 147 22 32 chr4 164185904 164186497 -20102165 + L1MC1 LINE L1 5745 6331 -2 1533 181 22 4 chr4 164188707 164188978 -20099684 + AluJo SINE Alu 9 284 -28 2489 82 0 0 chr4 164190389 164190754 -20097908 - L1P LINE L1 -2579 3567 3203 13228 46 2 16 chr4 164190754 164192349 -20096313 + L1PA5 LINE L1 3675 5262 -892 2330 97 0 3 chr4 164192349 164192657 -20096005 + AluY SINE Alu 1 307 -4 13228 46 2 16 chr4 164192657 164193538 -20095124 + L1PA5 LINE L1 5262 6154 0 21 57 0 0 chr4 164194646 164194681 -20093981 + AT_rich Low_complexity Low_complexity 1 35 0 196 254 108 85 chr4 164195569 164195699 -20092963 - MIR SINE MIR -110 152 20 291 28 0 0 chr4 164195954 164195990 -20092672 + (TG)n Simple_repeat Simple_repeat 2 37 0 194 286 26 26 chr4 164196135 164196212 -20092450 + L2 LINE L2 3232 3308 -5 3531 129 54 3 chr4 164196875 164197449 -20091213 - LTR26 LTR ERV1 0 603 1 200 315 0 0 chr4 164198691 164198745 -20089917 - MIR SINE MIR -127 135 82 21 0 0 0 chr4 164198933 164198954 -20089708 + AT_rich Low_complexity Low_complexity 1 21 0 1827 136 23 45 chr4 164199078 164199386 -20089276 - AluSg SINE Alu -9 301 1 243 0 0 0 chr4 164199540 164199567 -20089095 + (TA)n Simple_repeat Simple_repeat 2 28 0 4354 108 0 5 chr4 164199859 164200478 -20088184 + L1PA11 LINE L1 5559 6174 0 2968 94 45 7 chr4 164201160 164201202 -20087460 - MLT2A1 LTR ERVL 0 444 405 186 43 0 0 chr4 164201202 164201225 -20087437 + (TA)n Simple_repeat Simple_repeat 2 24 0 2968 94 45 7 chr4 164201225 164201608 -20087054 - MLT2A1 LTR ERVL -39 405 3 2933 88 4 41 chr4 164201673 164202138 -20086524 + LTR7 LTR ERV1 1 448 -2 18765 92 22 19 chr4 164202140 164205116 -20083546 + HERVH LTR ERV1 1 2987 -4726 786 162 20 0 chr4 164205110 164205258 -20083404 + HERVH LTR ERV1 3140 3290 -4423 * 3306 105 0 8 chr4 164205248 164205761 -20082901 + HERVH LTR ERV1 3492 4000 -3713 * 4108 136 1 3 chr4 164205756 164206418 -20082244 + HERVH LTR ERV1 4489 5149 -2564 1317 124 18 5 chr4 164206419 164206636 -20082026 + HERVH LTR ERV1 5600 5819 -1894 1918 115 45 70 chr4 164206636 164207036 -20081626 + HERVH LTR ERV1 7324 7713 0 2833 68 94 10 chr4 164207036 164207449 -20081213 + LTR7 LTR ERV1 1 448 -2 747 199 71 58 chr4 164207649 164207968 -20080694 + MSTD LTR MaLR 3 353 -12 6135 223 72 35 chr4 164207971 164208128 -20080534 + MSTD-int LTR MaLR 8 158 -1577 1350 147 128 84 chr4 164208128 164208557 -20080105 - LTR7 LTR ERV1 -2 448 1 6135 223 72 35 chr4 164208557 164209537 -20079125 + MSTD-int LTR MaLR 158 1228 -507 4524 68 78 3 chr4 164209537 164210151 -20078511 + PABL_A LTR ERV1 1 660 0 6135 223 72 35 chr4 164210151 164210673 -20077989 + MSTD-int LTR MaLR 1228 1729 -6 541 172 49 2 chr4 164210678 164210805 -20077857 + MSTD LTR MaLR 1 148 -217 386 98 0 0 chr4 164210934 164210995 -20077667 + MSTB2 LTR MaLR 397 457 0 521 94 52 21 chr4 164211111 164211207 -20077455 + MER4A LTR ERV1 1 99 -565 1643 134 3 77 chr4 164211207 164211579 -20077083 + MER4A LTR ERV1 262 664 0 2389 60 0 3 chr4 164212417 164212715 -20075947 - AluY SINE Alu -14 297 1 3087 162 28 26 chr4 164212958 164213568 -20075094 + LTR36 LTR ERV1 1 611 0 557 221 22 22 chr4 164213668 164213804 -20074858 - MLT1H LTR MaLR -251 298 163 243 260 132 44 chr4 164215214 164215441 -20073221 - MLT1H LTR MaLR -8 547 301 849 272 27 15 chr4 164215478 164215739 -20072923 - MLT1H LTR MaLR -285 264 1 2155 122 0 0 chr4 164216040 164216335 -20072327 + AluSx SINE Alu 2 296 -16 187 318 242 19 chr4 164219520 164219731 -20068931 + L2 LINE L2 2836 3093 -179 221 294 8 118 chr4 164219852 164219891 -20068771 + L2 LINE L2 3166 3208 -64 2342 89 0 3 chr4 164219891 164220193 -20068469 - AluY SINE Alu -10 301 1 221 294 8 118 chr4 164220193 164220272 -20068390 + L2 LINE L2 3208 3271 -1 218 312 14 106 chr4 164220462 164220603 -20068059 + L2 LINE L2 2583 2710 -604 1843 127 4 0 chr4 164220608 164220908 -20067754 + AluSq SINE Alu 1 285 -28 1206 153 145 4 chr4 164224251 164224363 -20064299 - MLT2B1 LTR ERVL -252 268 173 2399 141 41 7 chr4 164224363 164224774 -20063888 - MSTA LTR MaLR -3 425 1 1206 153 145 4 chr4 164224774 164224896 -20063766 - MLT2B1 LTR ERVL -347 173 1 26 30 0 0 chr4 164225155 164225188 -20063474 + AT_rich Low_complexity Low_complexity 1 33 0 1598 211 93 9 chr4 164225323 164225744 -20062918 - MLT1C LTR MaLR 0 467 12 194 128 26 0 chr4 164225988 164226027 -20062635 + (CATATA)n Simple_repeat Simple_repeat 5 44 0 843 283 129 38 chr4 164227791 164228604 -20060058 + L1ME3A LINE L1 5260 6146 -24 369 287 22 45 chr4 164229675 164229943 -20058719 + L1MEc LINE L1 1431 1692 -4704 29 28 0 0 chr4 164230077 164230113 -20058549 + AT_rich Low_complexity Low_complexity 1 36 0 669 236 14 72 chr4 164230119 164230222 -20058440 + MER82 DNA MER2_type 6 113 -540 3591 145 14 35 chr4 164230222 164230779 -20057883 - L1PA15 LINE L1 0 6165 5598 2405 140 3 3 chr4 164230779 164231143 -20057519 + THE1B LTR MaLR 1 364 0 8897 133 36 58 chr4 164231143 164232758 -20055904 + THE1B-int LTR MaLR 1 1580 0 2407 143 3 0 chr4 164232758 164233121 -20055541 + THE1B LTR MaLR 1 364 0 3591 145 14 35 chr4 164233121 164233218 -20055444 - L1PA15 LINE L1 -564 5601 5523 669 236 14 72 chr4 164233218 164233322 -20055340 + MER82 DNA MER2_type 113 201 -452 24 67 0 0 chr4 164233322 164233367 -20055295 + AT_rich Low_complexity Low_complexity 1 45 0 1761 141 91 0 chr4 164234825 164235101 -20053561 - AluSc SINE Alu -8 301 1 1466 298 25 5 chr4 164235464 164235907 -20052755 + MER82 DNA MER2_type 202 653 0 804 245 61 45 chr4 164235923 164236399 -20052263 - MLT1E2 LTR MaLR -2 624 68 230 316 0 0 chr4 164236688 164236767 -20051895 + A-rich Low_complexity Low_complexity 1 79 0 240 301 53 0 chr4 164236821 164236934 -20051728 + L1MEc LINE L1 2239 2357 -3858 245 204 20 0 chr4 164236968 164237017 -20051645 + L1 LINE L1 12 61 -5267 412 68 14 40 chr4 164237030 164237104 -20051558 + (GA)n Simple_repeat Simple_repeat 2 73 0 6272 217 33 13 chr4 164237147 164241036 -20047626 + L1 LINE L1 69 4025 -2303 604 208 83 24 chr4 164241089 164241257 -20047405 + L1 LINE L1 5236 5413 -915 357 159 0 0 chr4 164241401 164241464 -20047198 + (TA)n Simple_repeat Simple_repeat 2 64 0 247 231 11 22 chr4 164241469 164241560 -20047102 - L1MC4 LINE L1 -1339 6703 6614 1443 190 118 128 chr4 164242464 164243063 -20045599 - MLT1E LTR MaLR 0 593 1 25 31 0 0 chr4 164243378 164243410 -20045252 + AT_rich Low_complexity Low_complexity 1 32 0 359 316 14 7 chr4 164244156 164244295 -20044367 + MIR SINE MIR 123 262 0 29 28 0 0 chr4 164244329 164244365 -20044297 + AT_rich Low_complexity Low_complexity 1 36 0 6231 192 34 11 chr4 164244365 164246687 -20041975 - L1MA4A LINE L1 -7 6296 3918 10886 171 71 7 chr4 164246690 164249169 -20039493 + L1MA2 LINE L1 22 2692 -4873 5870 203 26 10 chr4 164249169 164250940 -20037722 + L1MA2 LINE L1 3247 5043 -2522 730 251 73 45 chr4 164250941 164251424 -20037238 + LTR28 LTR ERV1 1 1297 -12 2633 196 55 16 chr4 164251566 164252240 -20036422 + L1MA2 LINE L1 5037 5705 -1860 * 16735 189 35 12 chr4 164252218 164255235 -20033427 + L1PA13 LINE L1 2868 6031 -1551 2147 127 0 13 chr4 164255235 164255543 -20033119 + AluSg SINE Alu 1 304 -6 16735 189 35 12 chr4 164255543 164257132 -20031530 + L1PA13 LINE L1 6031 7582 0 6738 158 13 6 chr4 164257129 164259133 -20029529 + L1MA2 LINE L1 5698 7716 -7 * 2353 89 0 3 chr4 164259155 164259457 -20029205 + AluY SINE Alu 1 301 -10 238 212 8 0 chr4 164259462 164259534 -20029128 - L1M4 LINE L1 -2213 4635 4562 8658 233 51 79 chr4 164259545 164260850 -20027812 - L1M4 LINE L1 -3357 3491 2151 15751 57 1 5 chr4 164260850 164263651 -20025011 - L1PA5 LINE L1 0 6154 3356 8658 233 51 79 chr4 164263651 164265940 -20022722 - L1M4 LINE L1 -4697 2151 1 1132 142 25 0 chr4 164267880 164268361 -20020301 + L1MA3 LINE L1 5702 6300 -5 22 0 0 0 chr4 164268361 164268383 -20020279 + AT_rich Low_complexity Low_complexity 1 22 0 1724 171 17 11 chr4 164270285 164270572 -20018090 - AluJb SINE Alu -22 290 2 33 43 0 0 chr4 164271215 164271262 -20017400 + AT_rich Low_complexity Low_complexity 1 47 0 204 111 0 0 chr4 164271306 164271342 -20017320 + (TA)n Simple_repeat Simple_repeat 1 36 0 180 300 57 14 chr4 164271353 164271423 -20017239 - MIR SINE MIR -100 162 90 12787 193 32 19 chr4 164271437 164273617 -20015045 - L1M1 LINE L1 -610 5695 3436 2280 110 0 0 chr4 164273617 164273918 -20014744 - AluY SINE Alu -10 301 1 12787 193 32 19 chr4 164273918 164275094 -20013568 - L1M1 LINE L1 -2869 3436 2276 27 0 0 0 chr4 164275147 164275174 -20013488 + AT_rich Low_complexity Low_complexity 1 27 0 209 146 0 42 chr4 164275336 164275384 -20013278 + (GGAAA)n Simple_repeat Simple_repeat 4 49 0 27 62 0 0 chr4 164275806 164275854 -20012808 + AT_rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr4 164276114 164276138 -20012524 + AT_rich Low_complexity Low_complexity 1 24 0 2168 105 0 3 chr4 164276224 164276519 -20012143 - AluSq SINE Alu -19 294 1 181 355 16 0 chr4 164277889 164277951 -20010711 + MIR SINE MIR 3 65 -197 327 151 47 70 chr4 164279017 164279103 -20009559 - L1MA9 LINE L1 -378 5934 5851 1239 139 91 45 chr4 164279618 164279895 -20008767 + L1MA9 LINE L1 5849 6143 -169 201 39 0 0 chr4 164279895 164279921 -20008741 + (TC)n Simple_repeat Simple_repeat 1 26 0 1239 139 91 45 chr4 164279921 164279952 -20008710 + L1MA9 LINE L1 6143 6171 -141 264 277 15 0 chr4 164279960 164280025 -20008637 - MER5A DNA MER1_type -123 66 1 193 366 51 40 chr4 164280217 164280392 -20008270 + MIR SINE MIR 20 196 -66 30 27 0 0 chr4 164280631 164280668 -20007994 + AT_rich Low_complexity Low_complexity 1 37 0 261 193 0 0 chr4 164280684 164280741 -20007921 + L1MC2 LINE L1 5193 5249 -897 4896 183 27 22 chr4 164280749 164281892 -20006770 + L1MC2 LINE L1 5193 6335 -9 371 208 66 0 chr4 164281935 164282041 -20006621 - MER103 DNA DNA -8 158 46 1489 151 42 28 chr4 164282041 164282325 -20006337 + AluJb SINE Alu 1 288 -24 347 268 14 7 chr4 164282477 164282615 -20006047 + (TA)n Simple_repeat Simple_repeat 1 139 0 224 298 0 0 chr4 164282721 164282778 -20005884 + L2 LINE L2 1890 1946 -1368 1408 173 44 51 chr4 164282783 164283244 -20005418 - MLT2A2 LTR ERVL 0 554 93 271 263 9 88 chr4 164283783 164283897 -20004765 + MIR SINE MIR 145 249 -13 474 18 0 0 chr4 164284086 164284141 -20004521 + (TA)n Simple_repeat Simple_repeat 2 56 0 312 27 0 0 chr4 164284196 164284233 -20004429 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 360 287 40 53 chr4 164284234 164284384 -20004278 - MIR SINE MIR -114 148 1 357 300 50 0 chr4 164284848 164284948 -20003714 + MIR SINE MIR 16 120 -142 220 200 0 73 chr4 164284921 164284976 -20003686 + L2 LINE L2 3247 3297 -16 * 1908 135 3 0 chr4 164285399 164285687 -20002975 + AluJo SINE Alu 1 289 -23 231 207 61 85 chr4 164285691 164285773 -20002889 + MER67C LTR ERV1 15 94 -616 26 30 0 0 chr4 164286166 164286199 -20002463 + AT_rich Low_complexity Low_complexity 1 33 0 1842 120 25 4 chr4 164286870 164287146 -20001516 + AluSx SINE Alu 1 282 -30 423 0 0 0 chr4 164287149 164287196 -20001466 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 23 0 0 0 chr4 164287216 164287239 -20001423 + AT_rich Low_complexity Low_complexity 1 23 0 635 223 22 7 chr4 164287251 164287390 -20001272 - MLT1C LTR MaLR -3 464 324 489 309 26 20 chr4 164287415 164287567 -20001095 - MIR SINE MIR -87 175 23 280 241 48 18 chr4 164287725 164287891 -20000771 + (TA)n Simple_repeat Simple_repeat 1 171 0 754 186 0 0 chr4 164288224 164288353 -20000309 + FLAM_C SINE Alu 1 129 -4 279 0 0 0 chr4 164288805 164288836 -19999826 + (CA)n Simple_repeat Simple_repeat 2 32 0 292 315 49 0 chr4 164339591 164339734 -19948928 - L1MEd LINE L1 -5901 218 69 4046 166 31 8 chr4 164339941 164340647 -19948015 - MER72 LTR ERV1 0 722 1 182 250 96 19 chr4 164341339 164341443 -19947219 + L2 LINE L2 3126 3237 -76 186 103 0 0 chr4 164341493 164341522 -19947140 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 734 247 91 128 chr4 164341531 164342220 -19946442 - L2 LINE L2 -22 3291 2616 45 48 0 39 chr4 164342277 164342380 -19946282 + AT_rich Low_complexity Low_complexity 1 99 0 1286 204 39 11 chr4 164342386 164342665 -19945997 - AluJb SINE Alu -25 287 1 432 341 7 0 chr4 164342666 164342804 -19945858 - L2 LINE L2 -687 2627 2489 1178 63 4 173 chr4 164342804 164343041 -19945621 + MER107 DNA MER1_type 1 197 0 679 370 8 0 chr4 164343186 164343424 -19945238 - MIR SINE MIR -11 251 12 249 33 0 0 chr4 164343512 164343542 -19945120 + (CA)n Simple_repeat Simple_repeat 2 31 0 454 274 65 36 chr4 164344278 164344446 -19944216 + MIR SINE MIR 89 261 -1 232 70 47 0 chr4 164344843 164344886 -19943776 + (TTATA)n Simple_repeat Simple_repeat 5 49 0 2655 134 21 0 chr4 164345054 164345473 -19943189 + MSTA LTR MaLR 1 428 0 2909 274 44 17 chr4 164345588 164347913 -19940749 - L1MC3 LINE L1 -715 5449 4463 2295 268 90 26 chr4 164347907 164349046 -19939616 - L1MC3 LINE L1 -1949 4197 2987 * 5900 127 11 33 chr4 164349176 164350270 -19938392 - L1PA13 LINE L1 -1 6162 5071 1760 204 43 3 chr4 164351628 164351980 -19936682 - MLT1A2 LTR MaLR -4 370 5 2674 91 3 0 chr4 164352096 164352457 -19936205 - MER41B LTR ERV1 -273 362 1 24 32 0 0 chr4 164353619 164353650 -19935012 + AT_rich Low_complexity Low_complexity 1 31 0 2185 76 0 10 chr4 164353995 164354285 -19934377 + AluY SINE Alu 1 287 -24 33 0 0 0 chr4 164354285 164354318 -19934344 + AT_rich Low_complexity Low_complexity 1 33 0 1744 143 0 21 chr4 164355938 164356225 -19932437 + AluSx SINE Alu 1 281 -31 24 32 0 0 chr4 164356480 164356511 -19932151 + AT_rich Low_complexity Low_complexity 1 31 0 297 288 99 73 chr4 164356561 164356669 -19931993 + MIR SINE MIR 7 124 -138 1993 154 3 6 chr4 164356669 164356981 -19931681 + AluSx SINE Alu 2 312 0 297 288 99 73 chr4 164356981 164357063 -19931599 + MIR SINE MIR 124 202 -60 771 165 13 44 chr4 164357077 164357235 -19931427 - MSTD LTR MaLR 0 396 244 628 242 31 31 chr4 164357460 164357654 -19931008 - MSTD LTR MaLR -171 194 1 806 138 0 0 chr4 164358202 164358325 -19930337 - AluSg/x SINE Alu -12 298 176 2223 130 82 52 chr4 164358449 164358806 -19929856 - L1PA13 LINE L1 -4 6159 5773 1534 200 30 13 chr4 164358806 164359111 -19929551 - AluJb SINE Alu -2 310 1 2223 130 82 52 chr4 164359111 164359197 -19929465 - L1PA13 LINE L1 -390 5773 5691 411 21 0 0 chr4 164359419 164359467 -19929195 + (CA)n Simple_repeat Simple_repeat 2 49 0 387 328 119 20 chr4 164359620 164359821 -19928841 + MIR SINE MIR 5 225 -37 256 379 89 0 chr4 164359899 164360023 -19928639 - L2 LINE L2 -13 3259 3125 24 32 0 0 chr4 164360555 164360586 -19928076 + AT_rich Low_complexity Low_complexity 1 31 0 869 172 0 0 chr4 164361042 164361176 -19927486 + AluJb SINE Alu 154 287 -25 2802 166 62 16 chr4 164361465 164361831 -19926831 - MER6A DNA MER2_type -260 605 201 351 60 0 0 chr4 164361831 164361881 -19926781 + (CTCA)n Simple_repeat Simple_repeat 4 53 0 2802 166 62 16 chr4 164361881 164362092 -19926570 - MER6A DNA MER2_type -664 201 1 416 310 48 27 chr4 164363835 164364022 -19924640 + MIR SINE MIR 49 239 -23 661 281 62 63 chr4 164364294 164364814 -19923848 + HAL1b LINE L1 571 1089 -259 26 0 0 0 chr4 164365665 164365691 -19922971 + AT_rich Low_complexity Low_complexity 1 26 0 991 110 0 0 chr4 164365691 164365827 -19922835 - AluSq/x SINE Alu -176 136 1 30 45 0 0 chr4 164366874 164366918 -19921744 + AT_rich Low_complexity Low_complexity 1 44 0 1021 41 0 0 chr4 164367233 164367355 -19921307 + AluY SINE Alu 173 294 -17 22 35 0 0 chr4 164367815 164367844 -19920818 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 164368703 164368725 -19919937 + AT_rich Low_complexity Low_complexity 1 22 0 398 301 72 24 chr4 164369299 164369465 -19919197 - MIR SINE MIR -33 229 56 469 313 76 20 chr4 164370257 164370455 -19918207 + MIR SINE MIR 54 262 0 344 167 14 0 chr4 164370577 164370649 -19918013 + (TA)n Simple_repeat Simple_repeat 1 73 0 658 317 57 4 chr4 164370765 164371027 -19917635 + L2 LINE L2 1705 1980 -1334 558 317 6 6 chr4 164371036 164371216 -19917446 + L2 LINE L2 2121 2300 -1014 728 231 28 9 chr4 164374430 164374642 -19914020 - L1MD3 LINE L1 -8 7987 7772 278 28 28 0 chr4 164374654 164374690 -19913972 + MSTA LTR MaLR 1 37 -391 391 106 30 0 chr4 164374796 164374878 -19913784 - Alu SINE Alu -232 67 1 2285 154 56 7 chr4 164375215 164375623 -19913039 - MSTA LTR MaLR 0 428 1 1378 227 37 47 chr4 164376015 164376420 -19912242 - MER31B LTR ERV1 -43 423 23 243 0 0 0 chr4 164380539 164380566 -19908096 + (T)n Simple_repeat Simple_repeat 1 27 0 1241 117 22 6 chr4 164380566 164380745 -19907917 - AluSq SINE Alu -131 182 1 294 322 46 67 chr4 164381233 164381562 -19907100 + L2 LINE L2 2849 3170 -102 30 0 0 0 chr4 164381663 164381693 -19906969 + AT_rich Low_complexity Low_complexity 1 30 0 5311 235 46 38 chr4 164382763 164384623 -19904039 - L1MEc LINE L1 -2047 4099 2253 3504 115 9 7 chr4 164384651 164385190 -19903472 + L1MA1 LINE L1 5449 5988 -314 1720 98 19 4 chr4 164385290 164385556 -19903106 + L1MA1 LINE L1 6033 6302 0 21 36 0 0 chr4 164385570 164385598 -19903064 + AT_rich Low_complexity Low_complexity 1 28 0 2011 230 29 5 chr4 164385637 164386081 -19902581 - MER82 DNA MER2_type 0 653 199 25 0 0 0 chr4 164386230 164386255 -19902407 + AT_rich Low_complexity Low_complexity 1 25 0 648 231 38 12 chr4 164386433 164386593 -19902069 - MER82 DNA MER2_type -480 173 10 369 343 84 4 chr4 164386698 164386972 -19901690 + L1M4 LINE L1 4141 4436 -1710 180 0 0 0 chr4 164387398 164387418 -19901244 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 224 378 148 21 chr4 164387453 164387792 -19900870 + L2 LINE L2 372 753 -2561 2183 182 38 61 chr4 164387807 164388329 -19900333 - MER67D LTR ERV1 0 514 5 2105 113 131 18 chr4 164388622 164389003 -19899659 - MSTA LTR MaLR -2 426 3 4887 196 21 5 chr4 164389005 164389902 -19898760 - MSTA-int LTR MaLR 0 1651 740 3857 195 12 8 chr4 164390089 164390888 -19897774 - L1 LINE L1 -1380 4766 3964 2267 100 0 3 chr4 164392228 164392527 -19896135 - AluSq SINE Alu -13 300 3 358 330 100 40 chr4 164392830 164393130 -19895532 + L2 LINE L2 2432 2749 -565 1851 176 31 11 chr4 164393319 164393678 -19894984 - LTR60 LTR ERV1 0 586 221 392 229 0 57 chr4 164393732 164393837 -19894825 - LTR60 LTR ERV1 -480 106 8 216 265 129 53 chr4 164394199 164394331 -19894331 + L2 LINE L2 3166 3307 -6 245 295 133 19 chr4 164394517 164394622 -19894040 + L2 LINE L2 3197 3313 0 1289 248 76 24 chr4 164395755 164395787 -19892875 - HERVL40 LTR ERVL -927 4603 4574 2207 124 0 0 chr4 164395787 164396094 -19892568 - AluSx SINE Alu -3 309 3 1289 248 76 24 chr4 164396094 164396444 -19892218 - HERVL40 LTR ERVL -956 4574 4201 3112 149 38 123 chr4 164396444 164397190 -19891472 - LTR8 LTR ERV1 0 691 10 5298 271 64 15 chr4 164397227 164397535 -19891127 - HERVL40 LTR ERVL -1327 4203 3912 2064 113 50 0 chr4 164397535 164397818 -19890844 - AluSx SINE Alu -15 297 1 5298 271 64 15 chr4 164397818 164399113 -19889549 - HERVL40 LTR ERVL -1618 3912 2521 1290 298 90 52 chr4 164399113 164399784 -19888878 - HERVL40 LTR ERVL -3921 1609 902 2294 86 17 0 chr4 164399784 164400074 -19888588 - AluSg1 SINE Alu -14 295 1 1290 298 90 52 chr4 164400074 164400205 -19888457 - HERVL40 LTR ERVL -4628 902 777 537 275 71 99 chr4 164400297 164401105 -19887557 - L1MEd LINE L1 -4445 1684 862 2275 84 0 3 chr4 164401261 164401548 -19887114 - AluY SINE Alu -25 286 1 2070 118 10 3 chr4 164402005 164402309 -19886353 - AluSg SINE Alu -4 306 1 2047 253 70 34 chr4 164402311 164403103 -19885559 - L1ME1 LINE L1 -112 6054 5236 731 217 46 32 chr4 164403318 164403535 -19885127 - L1ME1 LINE L1 -2019 4127 3908 1642 141 235 0 chr4 164403539 164403879 -19884783 + MSTB LTR MaLR 6 425 -1 1464 322 28 2 chr4 164403880 164404516 -19884146 - L1ME1 LINE L1 -2233 3913 3261 6299 136 6 7 chr4 164404792 164406633 -19882029 - L1PA11 LINE L1 -2 6172 4330 23 54 0 0 chr4 164408285 164408322 -19880340 + AT_rich Low_complexity Low_complexity 1 37 0 204 382 24 24 chr4 164408714 164408837 -19879825 - MIR SINE MIR -69 139 17 23 92 0 0 chr4 164410337 164410402 -19878260 + AT_rich Low_complexity Low_complexity 1 65 0 2111 111 7 0 chr4 164410416 164410722 -19877940 - AluSx SINE Alu 0 308 1 216 200 22 0 chr4 164410768 164410813 -19877849 - L2 LINE L2 -13 3259 3214 450 0 0 0 chr4 164411377 164411427 -19877235 + (TG)n Simple_repeat Simple_repeat 2 51 0 1346 111 78 9 chr4 164412061 164412278 -19876384 + Tigger5 DNA MER2_type 2091 2322 -1 2224 91 7 10 chr4 164413157 164413464 -19875198 - AluSc SINE Alu -3 306 1 225 242 0 0 chr4 164413634 164413696 -19874966 + (GTTTG)n Simple_repeat Simple_repeat 3 64 0 27 62 0 0 chr4 164413948 164413996 -19874666 + AT_rich Low_complexity Low_complexity 1 48 0 583 244 0 0 chr4 164414226 164414349 -19874313 + LTR16A LTR ERVL 328 450 0 313 333 20 0 chr4 164414350 164414452 -19874210 - MIR SINE MIR -60 148 45 220 401 27 0 chr4 164416011 164416158 -19872504 + MIR3 SINE MIR 57 207 -1 1125 317 30 61 chr4 164417267 164417532 -19871130 - L2 LINE L2 -1 3312 3040 2362 100 0 0 chr4 164417532 164417831 -19870831 - AluSq SINE Alu -10 303 5 1125 317 30 61 chr4 164417831 164418374 -19870288 - L2 LINE L2 -273 3040 2530 2365 239 97 34 chr4 164418375 164419409 -19869253 + LTR28 LTR ERV1 2 1755 0 1839 263 46 51 chr4 164419409 164420021 -19868641 - L2 LINE L2 -781 2533 1925 262 200 200 10 chr4 164420251 164420351 -19868311 + MIR3 SINE MIR 88 206 -2 1753 187 3 0 chr4 164421469 164421758 -19866904 + AluJo SINE Alu 6 295 -17 22 56 0 0 chr4 164423203 164423239 -19865423 + AT_rich Low_complexity Low_complexity 1 36 0 232 359 83 28 chr4 164425031 164425176 -19863486 - MIR3 SINE MIR -54 154 2 473 203 17 51 chr4 164425239 164425357 -19863305 - L2 LINE L2 0 3313 3200 2354 37 0 0 chr4 164425890 164426160 -19862502 + AluY SINE Alu 35 304 -7 2442 62 7 0 chr4 164427143 164427451 -19861211 + AluY SINE Alu 1 310 -1 2441 84 0 0 chr4 164429287 164429597 -19859065 + AluY SINE Alu 1 310 -1 454 155 50 34 chr4 164430021 164430140 -19858522 - MER45A DNA AcHobo -1 177 62 1749 180 39 14 chr4 164430768 164431124 -19857538 + MLT1A1 LTR MaLR 1 365 0 26 0 0 0 chr4 164431382 164431408 -19857254 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr4 164431743 164431772 -19856890 + AT_rich Low_complexity Low_complexity 1 29 0 2314 99 0 0 chr4 164432326 164432619 -19856043 + AluSg SINE Alu 1 293 -17 1991 84 84 0 chr4 164432702 164432975 -19855687 + AluY SINE Alu 1 296 -15 333 0 0 0 chr4 164432975 164433012 -19855650 + (TA)n Simple_repeat Simple_repeat 2 38 0 207 100 0 0 chr4 164433012 164433042 -19855620 + (TG)n Simple_repeat Simple_repeat 2 31 0 13008 180 21 51 chr4 164433344 164434058 -19854604 + L1MA4A LINE L1 2611 3345 -3660 1022 172 0 0 chr4 164434058 164434215 -19854447 + AluJb SINE Alu 140 296 -16 13008 180 21 51 chr4 164434215 164437199 -19851463 + L1MA4A LINE L1 3345 6338 -667 1169 108 9 199 chr4 164437199 164437286 -19851376 + LTR12 LTR ERV1 2 104 -610 2270 82 0 0 chr4 164437286 164437602 -19851060 + AluY SINE Alu 1 316 0 1169 108 9 199 chr4 164437602 164437854 -19850808 + LTR12 LTR ERV1 104 277 -437 295 273 10 0 chr4 164437854 164437953 -19850709 + LTR30 LTR ERV1 544 643 -79 738 109 0 0 chr4 164437954 164438055 -19850607 + LTR12 LTR ERV1 481 581 -133 3343 167 38 11 chr4 164438055 164438619 -19850043 + L1MA4A LINE L1 6334 6920 -85 2161 164 39 53 chr4 164438619 164439087 -19849575 + LOR1b LTR ERV1 1 461 0 3343 167 38 11 chr4 164439087 164439175 -19849487 + L1MA4A LINE L1 6920 7004 -1 389 194 19 84 chr4 164439180 164439335 -19849327 + L1MA9 LINE L1 6167 6311 -1 * 922 227 44 20 chr4 164439329 164439689 -19848973 + L1M4c LINE L1 2224 2618 -3764 * 12167 191 12 22 chr4 164439688 164441904 -19846758 + L1PA15-16 LINE L1 448 2286 -4563 2196 100 0 13 chr4 164441904 164442203 -19846459 + AluY SINE Alu 1 295 -16 12167 191 12 22 chr4 164442203 164443014 -19845648 + L1PA15-16 LINE L1 2286 3104 -3745 2977 135 58 2 chr4 164443027 164443508 -19845154 - L1P LINE L1 -5626 520 13 375 218 0 10 chr4 164443509 164443610 -19845052 + L1M4c LINE L1 3652 3751 -2631 307 252 0 48 chr4 164443612 164443715 -19844947 - L1M4c LINE L1 -2541 3841 3744 245 182 0 0 chr4 164443707 164443751 -19844911 + L1M4c LINE L1 3858 3901 -2481 * 257 291 0 13 chr4 164444217 164444296 -19844366 + CT-rich Low_complexity Low_complexity 1 78 0 358 275 92 74 chr4 164444687 164445187 -19843475 + L1M4 LINE L1 2660 3174 -2972 4831 114 122 5 chr4 164445220 164446070 -19842592 - Tigger3b DNA MER2_type -5 1226 277 636 182 0 0 chr4 164446073 164446172 -19842490 - Tigger3b DNA MER2_type -1131 100 2 300 91 0 0 chr4 164446544 164446588 -19842074 + (CA)n Simple_repeat Simple_repeat 2 45 0 1977 146 149 11 chr4 164446765 164447141 -19841521 + MSTA LTR MaLR 1 428 0 9048 145 17 34 chr4 164447143 164448748 -19839914 + MSTA-int LTR MaLR 3 1580 0 1631 189 144 8 chr4 164448748 164449124 -19839538 + MSTA LTR MaLR 2 428 0 564 217 147 13 chr4 164449487 164449644 -19839018 - MLT1D LTR MaLR -6 499 322 635 199 76 11 chr4 164449775 164450145 -19838517 - MER88 LTR ERVL 0 464 1 573 293 221 16 chr4 164450168 164450608 -19838054 + L2 LINE L2 2444 2973 -341 1864 171 3 7 chr4 164450612 164450917 -19837745 - AluJb SINE Alu -8 304 1 251 146 0 0 chr4 164451048 164451089 -19837573 + HSMAR1 DNA Mariner 1247 1287 0 959 294 40 66 chr4 164451858 164452141 -19836521 + L1MDa LINE L1 82 344 -6196 1456 192 103 32 chr4 164452141 164452511 -19836151 + MSTD LTR MaLR 1 396 0 959 294 40 66 chr4 164452511 164452801 -19835861 + L1MDa LINE L1 344 640 -5900 2429 215 6 13 chr4 164452962 164453432 -19835230 + MER70A LTR ERVL 6 472 0 3329 224 110 43 chr4 164453926 164455154 -19833508 + L1MDa LINE L1 1010 2342 -4198 986 249 72 47 chr4 164455154 164455327 -19833335 + MSTD LTR MaLR 1 168 -228 1543 137 5 0 chr4 164455327 164455546 -19833116 + AluSx SINE Alu 38 257 -55 986 249 72 47 chr4 164455546 164455758 -19832904 + MSTD LTR MaLR 168 396 0 3329 224 110 43 chr4 164455758 164455915 -19832747 + L1MDa LINE L1 2342 2487 -4053 2458 166 51 112 chr4 164455912 164456163 -19832499 + L1MD2 LINE L1 5689 5954 -405 * 1958 129 7 3 chr4 164456163 164456458 -19832204 - AluSx SINE Alu -16 296 1 2458 166 51 112 chr4 164456458 164456911 -19831751 + L1MD2 LINE L1 5954 6350 -9 6809 76 67 17 chr4 164457444 164458858 -19829804 - L1PA7 LINE L1 -3 6151 4648 7070 110 5 17 chr4 164458859 164459631 -19829031 + L1P LINE L1 2423 3178 -2968 2302 91 0 3 chr4 164459631 164459929 -19828733 + AluY SINE Alu 1 297 -14 7070 110 5 17 chr4 164459929 164460266 -19828396 + L1P LINE L1 3178 3518 -2628 221 321 132 6 chr4 164461074 164461233 -19827429 - MIR SINE MIR -71 191 13 2112 155 55 69 chr4 164461905 164462414 -19826248 + MLT1D LTR MaLR 1 502 -3 1898 123 7 45 chr4 164463419 164463729 -19824933 + AluSx SINE Alu 1 298 -14 2074 137 3 0 chr4 164464175 164464482 -19824180 + AluSp SINE Alu 1 308 -5 37 39 0 0 chr4 164465019 164465070 -19823592 + AT_rich Low_complexity Low_complexity 1 51 0 221 244 0 0 chr4 164466726 164466771 -19821891 + GA-rich Low_complexity Low_complexity 2 46 0 239 246 0 33 chr4 164466817 164466878 -19821784 + L1M2 LINE L1 5509 5567 -745 248 253 13 13 chr4 164466881 164466956 -19821706 + MER82 DNA MER2_type 578 652 -1 22 0 0 0 chr4 164467019 164467041 -19821621 + AT_rich Low_complexity Low_complexity 1 22 0 315 285 88 62 chr4 164467098 164467403 -19821259 + L1ME3 LINE L1 5555 5867 -295 29 60 0 0 chr4 164467695 164467745 -19820917 + AT_rich Low_complexity Low_complexity 1 50 0 525 288 70 10 chr4 164467809 164468122 -19820540 + Charlie2 DNA MER1_type 2508 2839 -23 187 200 89 0 chr4 164468958 164469003 -19819659 + MIR SINE MIR 212 260 -2 226 296 83 28 chr4 164469120 164469228 -19819434 - MER117 DNA MER1_type -78 119 6 630 302 35 26 chr4 164469400 164469632 -19819030 - MIR SINE MIR -20 242 9 457 294 54 5 chr4 164470453 164470674 -19817988 - L1MEc LINE L1 -2324 3891 3660 1329 181 67 12 chr4 164470678 164470932 -19817730 + MLT1A1 LTR MaLR 6 273 -92 1135 100 24 0 chr4 164470945 164471115 -19817547 - L1MA3 LINE L1 0 6305 6132 1623 115 16 0 chr4 164471115 164471368 -19817294 + L1MA3 LINE L1 5807 6063 -242 500 181 32 0 chr4 164471372 164471466 -19817196 + MLT1A1 LTR MaLR 269 365 0 250 224 0 0 chr4 164471500 164471558 -19817104 - L1MA9 LINE L1 -32 6280 6223 1150 269 42 35 chr4 164471564 164472300 -19816362 - L1MEc LINE L1 -2580 3635 2895 375 218 9 18 chr4 164472292 164472402 -19816260 - L1MEc LINE L1 -3825 2390 2282 * 1799 180 50 3 chr4 164472402 164472725 -19815937 - MER7A DNA MER2_type -9 337 2 337 217 81 2 chr4 164472725 164472851 -19815811 - L1MEc LINE L1 -3926 2303 2157 424 330 53 11 chr4 164473132 164473396 -19815266 - L1MEc LINE L1 -4576 1820 1546 3806 142 81 16 chr4 164473423 164474111 -19814551 + L1PB1 LINE L1 3 735 -6128 * 12687 171 31 11 chr4 164474107 164478287 -19810375 + L1PB1 LINE L1 2617 6867 0 360 263 143 64 chr4 164478450 164479129 -19809533 - L1MEc LINE L1 -4690 1525 832 869 136 0 0 chr4 164479594 164479726 -19808936 - FLAM_C SINE Alu -1 132 1 21 0 0 0 chr4 164479847 164479868 -19808794 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr4 164481117 164481161 -19807501 + AT_rich Low_complexity Low_complexity 1 44 0 359 255 64 13 chr4 164481257 164481414 -19807248 + L1ME4a LINE L1 5956 6120 -1 198 0 0 0 chr4 164482657 164482679 -19805983 + (A)n Simple_repeat Simple_repeat 1 22 0 829 164 6 6 chr4 164482782 164482947 -19805715 + GA-rich Low_complexity Low_complexity 2 166 0 699 113 37 16 chr4 164483656 164483905 -19804757 + (TAGA)n Simple_repeat Simple_repeat 1 254 0 504 311 64 25 chr4 164483940 164484264 -19804398 - L2 LINE L2 -200 3113 2764 7081 134 23 2 chr4 164484338 164485309 -19803353 + L1PA10 LINE L1 4089 5039 -1129 2369 123 5 32 chr4 164485309 164485683 -19802979 + THE1B LTR MaLR 1 364 0 11409 110 2 0 chr4 164485683 164487259 -19801403 + THE1B-int LTR MaLR 1 1580 0 2432 116 5 32 chr4 164487261 164487633 -19801029 + THE1B LTR MaLR 3 364 0 7081 134 23 2 chr4 164487633 164488671 -19799991 + L1PA10 LINE L1 5039 6157 -11 2225 116 3 7 chr4 164488856 164489166 -19799496 + AluSc SINE Alu 1 309 0 468 299 63 85 chr4 164489347 164489436 -19799226 + HAL1b LINE L1 330 419 -929 561 113 62 0 chr4 164489436 164489533 -19799129 + L1MB2 LINE L1 6069 6171 0 468 299 63 85 chr4 164489533 164489985 -19798677 + HAL1b LINE L1 419 682 -666 235 381 0 0 chr4 164491598 164491695 -19796967 - MIR SINE MIR -140 122 26 322 331 57 0 chr4 164492299 164492423 -19796239 - MIR SINE MIR -69 193 63 726 274 215 25 chr4 164492830 164493173 -19795489 + L2 LINE L2 2874 3293 -20 2336 101 0 0 chr4 164493173 164493471 -19795191 - AluSq SINE Alu -15 298 1 726 274 215 25 chr4 164493471 164493495 -19795167 + L2 LINE L2 3293 3311 -2 189 299 65 0 chr4 164494017 164494094 -19794568 - L2 LINE L2 -6 3307 3226 1380 110 6 0 chr4 164494671 164494853 -19793809 + AluSp SINE Alu 1 183 -130 773 101 0 9 chr4 164494937 164495046 -19793616 - AluSg/x SINE Alu -13 299 192 1830 89 8 0 chr4 164495149 164495384 -19793278 - AluSq SINE Alu -76 237 1 26 0 0 0 chr4 164495694 164495720 -19792942 + AT_rich Low_complexity Low_complexity 1 26 0 24 53 0 0 chr4 164497220 164497258 -19791404 + AT_rich Low_complexity Low_complexity 1 38 0 840 289 71 33 chr4 164497282 164497352 -19791310 + L2 LINE L2 136 202 -3112 243 0 0 0 chr4 164497352 164497379 -19791283 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 2156 104 0 0 chr4 164497381 164497660 -19791002 - AluSg SINE Alu -31 279 1 840 289 71 33 chr4 164497660 164497950 -19790712 + L2 LINE L2 202 513 -2801 1128 216 67 54 chr4 164497964 164498353 -19790309 + LTR16A1 LTR ERVL 63 456 -1 524 221 121 0 chr4 164498588 164498728 -19789934 - Zaphod DNA AcHobo -2 4029 3873 429 264 19 9 chr4 164498737 164498843 -19789819 - MER115 DNA AcHobo -535 158 52 275 330 203 10 chr4 164499068 164499468 -19789194 - L2 LINE L2 -1 3312 2836 1847 205 72 100 chr4 164500520 164501280 -19787382 + LTR68 LTR ERV1 1 739 -1 1909 109 57 18 chr4 164501600 164501883 -19786779 + AluSx SINE Alu 1 294 -18 537 264 91 29 chr4 164501894 164502102 -19786560 - MIR SINE MIR -34 228 8 602 271 64 35 chr4 164502753 164502956 -19785706 - MIR SINE MIR -40 222 14 2750 179 24 6 chr4 164503257 164503789 -19784873 + MER34 LTR ERV1 1 542 0 23 0 0 0 chr4 164504392 164504415 -19784247 + AT_rich Low_complexity Low_complexity 1 23 0 2080 43 0 0 chr4 164504672 164504925 -19783737 - L1PA5 LINE L1 0 6154 5902 1435 148 92 95 chr4 164505024 164505362 -19783300 - MER1B DNA MER1_type 0 337 1 28 48 0 0 chr4 164507348 164507390 -19781272 + AT_rich Low_complexity Low_complexity 1 42 0 1939 184 6 16 chr4 164508050 164508414 -19780248 + MLT1A1 LTR MaLR 4 363 -2 26 0 0 0 chr4 164509061 164509087 -19779575 + AT_rich Low_complexity Low_complexity 1 26 0 436 303 14 21 chr4 164509124 164509269 -19779393 + MIR SINE MIR 97 240 -22 539 0 74 0 chr4 164510361 164510442 -19778220 + (GGGAA)n Simple_repeat Simple_repeat 3 89 0 667 274 74 14 chr4 164510646 164510861 -19777801 + MIR SINE MIR 35 262 0 279 243 0 0 chr4 164511391 164511461 -19777201 - MIR SINE MIR -44 218 149 27 29 0 0 chr4 164512059 164512093 -19776569 + AT_rich Low_complexity Low_complexity 1 34 0 25 0 0 0 chr4 164512328 164512353 -19776309 + AT_rich Low_complexity Low_complexity 1 25 0 607 216 32 156 chr4 164512627 164512909 -19775753 + MIR SINE MIR 14 260 -2 25 51 0 0 chr4 164512910 164512949 -19775713 + AT_rich Low_complexity Low_complexity 1 39 0 810 336 66 47 chr4 164513658 164513859 -19774803 + L2 LINE L2 2487 2683 -630 2345 64 0 10 chr4 164513859 164514154 -19774508 + AluY SINE Alu 1 292 -19 810 336 66 47 chr4 164514154 164514766 -19773896 + L2 LINE L2 2683 3312 -1 2267 116 3 0 chr4 164515409 164515719 -19772943 - AluSq SINE Alu -2 311 1 526 309 32 44 chr4 164515753 164516002 -19772660 + LTR33 LTR ERVL 3 248 -273 284 248 152 16 chr4 164516086 164516211 -19772451 + LTR33 LTR ERVL 378 519 -2 234 180 0 0 chr4 164516852 164516902 -19771760 - MER116 DNA Mariner -7 73 24 415 345 93 1 chr4 164516988 164517332 -19771330 - LTR16A LTR ERVL -28 422 3 340 118 29 0 chr4 164518268 164518336 -19770326 + (TATATG)n Simple_repeat Simple_repeat 2 71 0 250 192 41 14 chr4 164519331 164519404 -19769258 - MER116 DNA Mariner 0 80 6 23 0 0 0 chr4 164520155 164520178 -19768484 + AT_rich Low_complexity Low_complexity 1 23 0 248 289 55 23 chr4 164521867 164521995 -19766667 + LTR33 LTR ERVL 386 517 -4 10992 155 34 16 chr4 164522039 164522095 -19766567 + Tigger7 DNA MER2_type 35 88 -2399 1999 88 99 0 chr4 164522095 164522378 -19766284 + AluY SINE Alu 1 311 0 10992 155 34 16 chr4 164522378 164523080 -19765582 + Tigger7 DNA MER2_type 88 775 -1712 1957 127 10 26 chr4 164523080 164523387 -19765275 + AluSc SINE Alu 1 302 -7 10992 155 34 16 chr4 164523387 164524499 -19764163 + Tigger7 DNA MER2_type 775 1941 -546 567 139 0 0 chr4 164524509 164524595 -19764067 + AluSg SINE Alu 1 86 -224 776 177 15 0 chr4 164524605 164524735 -19763927 + Tigger7 DNA MER2_type 2356 2487 0 2113 134 0 0 chr4 164525396 164525702 -19762960 + AluSx SINE Alu 2 307 -5 305 327 139 40 chr4 164525737 164526061 -19762601 + L2 LINE L2 2915 3270 -2 460 126 32 0 chr4 164530267 164530362 -19758300 + (TGGA)n Simple_repeat Simple_repeat 2 99 0 204 191 21 21 chr4 164530363 164530410 -19758252 + (TAGA)n Simple_repeat Simple_repeat 1 47 0 917 126 6 27 chr4 164530413 164530596 -19758066 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 432 97 0 0 chr4 164530616 164530678 -19757984 + (GGAA)n Simple_repeat Simple_repeat 4 65 0 210 118 0 0 chr4 164530776 164530810 -19757852 + (CATATA)n Simple_repeat Simple_repeat 5 38 0 360 0 0 0 chr4 164530916 164530956 -19757706 + (CA)n Simple_repeat Simple_repeat 2 41 0 477 0 0 0 chr4 164530964 164531017 -19757645 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 385 262 99 21 chr4 164531227 164531368 -19757294 - L1MEd LINE L1 -5965 154 3 24 0 0 0 chr4 164531477 164531501 -19757161 + AT_rich Low_complexity Low_complexity 1 24 0 351 288 82 29 chr4 164532288 164532458 -19756204 + L1ME LINE L1 5640 5818 -303 218 381 103 0 chr4 164533584 164533710 -19754952 + MIR SINE MIR 21 159 -103 1331 340 78 22 chr4 164533772 164534697 -19753965 + L2 LINE L2 1882 2858 -456 2204 80 0 83 chr4 164534879 164535216 -19753446 - AluY SINE Alu -2 309 1 273 306 81 12 chr4 164535474 164535722 -19752940 + L1ME LINE L1 5559 5823 -298 2067 130 16 0 chr4 164536595 164536903 -19751759 - AluSq SINE Alu 0 313 1 614 338 72 16 chr4 164536995 164537415 -19751247 + L3 LINE CR1 865 1369 -208 211 271 0 0 chr4 164537629 164537677 -19750985 + (TG)n Simple_repeat Simple_repeat 2 49 0 441 330 66 5 chr4 164537888 164538085 -19750577 + MIR SINE MIR 47 255 -7 725 105 48 24 chr4 164538571 164538695 -19749967 + L1PA13 LINE L1 6033 6159 -4 4874 183 29 29 chr4 164538779 164539040 -19749622 + L1MA7 LINE L1 4947 5207 -1084 2073 124 0 3 chr4 164539040 164539360 -19749302 - AluSx SINE Alu 0 319 1 4874 183 29 29 chr4 164539360 164539819 -19748843 + L1MA7 LINE L1 5207 5665 -626 2768 121 29 0 chr4 164539819 164540240 -19748422 + MER57B LTR ERV1 2 434 0 4874 183 29 29 chr4 164540240 164540846 -19747816 + L1MA7 LINE L1 5665 6288 -3 26 0 0 0 chr4 164540846 164540872 -19747790 + AT_rich Low_complexity Low_complexity 1 26 0 251 140 20 0 chr4 164541155 164541205 -19747457 + (TTAAA)n Simple_repeat Simple_repeat 5 55 0 645 133 0 0 chr4 164541433 164541531 -19747131 - AluSc SINE Alu -12 297 200 1745 119 4 0 chr4 164541532 164541768 -19746894 - AluSc SINE Alu -72 237 1 574 47 35 0 chr4 164541814 164541899 -19746763 + (GAAA)n Simple_repeat Simple_repeat 1 88 0 251 140 20 0 chr4 164542448 164542498 -19746164 + (TTAAA)n Simple_repeat Simple_repeat 5 55 0 637 134 0 0 chr4 164542726 164542823 -19745839 - AluSc SINE Alu -13 296 200 1745 119 4 0 chr4 164542824 164543060 -19745602 - AluSc SINE Alu -72 237 1 676 92 13 33 chr4 164543106 164543259 -19745403 + (GAAA)n Simple_repeat Simple_repeat 1 150 0 1438 171 113 7 chr4 164543493 164543821 -19744841 + AluSg SINE Alu 1 357 0 1011 289 97 29 chr4 164544191 164544734 -19743928 + L1 LINE L1 2231 2736 -3410 2382 86 7 0 chr4 164544734 164545038 -19743624 + AluSc SINE Alu 1 306 -3 1011 289 97 29 chr4 164545038 164546108 -19742554 + L1 LINE L1 2736 3972 -2174 2165 123 0 0 chr4 164546113 164546406 -19742256 + AluSg SINE Alu 1 293 -17 261 0 0 0 chr4 164546434 164546463 -19742199 + (TG)n Simple_repeat Simple_repeat 2 30 0 821 188 49 59 chr4 164546484 164546771 -19741891 + L1MC4a LINE L1 6149 6432 -1376 796 193 75 16 chr4 164546766 164546953 -19741709 + L1PB4 LINE L1 5957 6154 -2 * 481 268 7 7 chr4 164546962 164547104 -19741558 + L1MC4a LINE L1 6418 6559 -1249 * 3362 217 164 10 chr4 164547103 164548142 -19740520 + L1MC4a LINE L1 6192 6356 -3 497 226 31 19 chr4 164548482 164548641 -19740021 - L1MB8 LINE L1 0 6178 6018 2457 67 0 0 chr4 164548874 164549171 -19739491 + AluY SINE Alu 1 297 -14 6261 137 56 28 chr4 164549346 164549555 -19739107 + Tigger3b DNA MER2_type 2 204 -2824 2188 123 0 0 chr4 164549555 164549857 -19738805 + AluSg SINE Alu 1 302 -8 6261 137 56 28 chr4 164549857 164550272 -19738390 + Tigger3b DNA MER2_type 204 606 -2422 1870 178 0 3 chr4 164550272 164550576 -19738086 + AluJb SINE Alu 1 303 -9 6261 137 56 28 chr4 164550576 164551146 -19737516 + Tigger3b DNA MER2_type 606 1231 0 33 25 0 0 chr4 164551339 164551379 -19737283 + AT_rich Low_complexity Low_complexity 1 40 0 244 167 60 67 chr4 164551381 164551531 -19737131 + (TTATA)n Simple_repeat Simple_repeat 1 149 0 482 317 62 37 chr4 164551828 164552071 -19736591 + MIR SINE MIR 2 250 -12 28 29 0 0 chr4 164553210 164553245 -19735417 + AT_rich Low_complexity Low_complexity 1 35 0 1001 151 0 0 chr4 164553316 164553462 -19735200 - FRAM SINE Alu -30 146 1 255 244 22 11 chr4 164553665 164553755 -19734907 + L1ME4a LINE L1 5982 6072 -49 23 0 0 0 chr4 164553782 164553805 -19734857 + AT_rich Low_complexity Low_complexity 1 23 0 264 162 42 21 chr4 164554476 164554618 -19734044 + (TA)n Simple_repeat Simple_repeat 1 145 0 8973 150 79 10 chr4 164554639 164556242 -19732420 + Tigger2 DNA MER2_type 61 1774 -944 289 119 119 0 chr4 164556235 164556294 -19732368 + Tigger2 DNA MER2_type 2421 2486 -232 * 309 327 108 42 chr4 164556303 164556517 -19732145 - L2 LINE L2 -473 2841 2614 412 250 0 0 chr4 164556548 164556652 -19732010 + U13 snRNA snRNA 1 104 0 29 28 0 0 chr4 164556661 164556697 -19731965 + AT_rich Low_complexity Low_complexity 1 36 0 393 243 0 0 chr4 164556697 164556771 -19731891 + Tigger2 DNA MER2_type 2635 2708 -10 1120 335 75 53 chr4 164557249 164558463 -19730199 - L2 LINE L2 -5 3267 2012 603 103 48 7 chr4 164558503 164558648 -19730014 + (TAGA)n Simple_repeat Simple_repeat 2 152 0 985 227 76 0 chr4 164559571 164559822 -19728840 - MER119 DNA MER1_type -3 580 311 210 37 0 0 chr4 164560201 164560228 -19728434 + (CA)n Simple_repeat Simple_repeat 2 28 0 233 288 19 77 chr4 164560516 164560891 -19727771 + HAL1 LINE L1 1120 1472 -1035 622 308 4 40 chr4 164560897 164561124 -19727538 + MIR SINE MIR 15 233 -29 246 302 47 30 chr4 164561138 164561307 -19727355 + HAL1 LINE L1 1513 1684 -823 4787 59 0 0 chr4 164561307 164561902 -19726760 - L1PA8 LINE L1 -14 6158 5564 366 266 7 49 chr4 164562257 164562400 -19726262 + HAL1b LINE L1 770 906 -442 912 202 75 75 chr4 164562431 164562690 -19725972 + L1MC5 LINE L1 7039 7300 -661 2010 111 7 0 chr4 164562690 164562970 -19725692 + AluSq SINE Alu 30 311 -2 912 202 75 75 chr4 164562970 164563072 -19725590 + L1MC5 LINE L1 7299 7400 -561 226 113 19 19 chr4 164563076 164563129 -19725533 + (CA)n Simple_repeat Simple_repeat 2 54 0 368 240 0 66 chr4 164563266 164563387 -19725275 + GA-rich Low_complexity Low_complexity 3 115 0 1041 227 149 89 chr4 164563498 164563961 -19724701 + MLT1E LTR MaLR 61 551 -42 275 163 0 0 chr4 164563997 164564046 -19724616 + MLT1J1 LTR MaLR 359 407 -39 1747 143 20 0 chr4 164564796 164565090 -19723572 + L1MA6 LINE L1 6001 6300 0 2013 189 31 58 chr4 164565998 164566517 -19722145 + MLT1D LTR MaLR 1 505 0 300 314 124 15 chr4 164566599 164566736 -19721926 - MIR SINE MIR -13 249 98 181 268 0 0 chr4 164567041 164567082 -19721580 + L2 LINE L2 774 814 -2500 198 128 0 0 chr4 164567725 164567764 -19720898 + (CAATT)n Simple_repeat Simple_repeat 3 41 0 314 355 130 19 chr4 164568120 164568489 -19720173 + L2 LINE L2 2364 2773 -541 1353 211 35 16 chr4 164568533 164568851 -19719811 - LTR53 LTR ERVL -4 515 192 5998 205 24 17 chr4 164569295 164570499 -19718163 - HERVL74 LTR ERVL -2376 3309 2098 1900 209 60 22 chr4 164570542 164571072 -19717590 - HERVL74 LTR ERVL -1418 2138 1593 271 196 304 7 chr4 164572290 164572428 -19716234 - L1ME LINE L1 -345 5776 5598 2197 92 0 0 chr4 164572434 164572753 -19715909 - AluSx SINE Alu 0 319 1 260 30 30 0 chr4 164572965 164572998 -19715664 + U2 snRNA snRNA 1 34 -154 * 295 190 0 0 chr4 164572995 164573053 -19715609 + MLT1F LTR MaLR 485 542 0 880 197 117 10 chr4 164573541 164573884 -19714778 - MER74C LTR ERVL -80 478 12 8955 94 6 8 chr4 164573895 164575987 -19712675 - L1PA8 LINE L1 -1 6486 4399 479 117 0 13 chr4 164575987 164576064 -19712598 - L1PA8 LINE L1 -2287 4174 4099 * 8220 133 23 12 chr4 164576053 164577696 -19710966 - L1PA8 LINE L1 -4789 1672 5 549 188 0 0 chr4 164577734 164577835 -19710827 - FLAM_A SINE Alu -32 110 10 192 77 0 0 chr4 164578123 164578149 -19710513 + (T)n Simple_repeat Simple_repeat 1 26 0 2488 71 3 3 chr4 164578768 164579076 -19709586 + AluSp SINE Alu 1 308 -5 2028 61 21 0 chr4 164579284 164579564 -19709098 + L1MA2 LINE L1 6019 6304 0 24 0 0 0 chr4 164579564 164579588 -19709074 + AT_rich Low_complexity Low_complexity 1 24 0 31 44 0 0 chr4 164579650 164579695 -19708967 + AT_rich Low_complexity Low_complexity 1 45 0 378 264 30 132 chr4 164579944 164580278 -19708384 - HAL1 LINE L1 -2108 399 100 21 0 0 0 chr4 164580739 164580760 -19707902 + AT_rich Low_complexity Low_complexity 1 21 0 214 250 42 0 chr4 164580959 164581007 -19707655 - L2 LINE L2 -2 3270 3221 1404 67 26 5 chr4 164581035 164581228 -19707434 + MER30 DNA MER1_type 1 197 -33 21 0 0 0 chr4 164582431 164582452 -19706210 + AT_rich Low_complexity Low_complexity 1 21 0 1664 309 140 31 chr4 164583063 164584450 -19704212 + L2 LINE L2 1670 3293 -20 4592 181 43 6 chr4 164585172 164586141 -19702521 - L1MC1 LINE L1 0 6333 5329 31 68 0 0 chr4 164586151 164586210 -19702452 + AT_rich Low_complexity Low_complexity 1 59 0 4969 136 21 1 chr4 164586541 164587350 -19701312 - L1PA15 LINE L1 -6 6810 5986 * 17846 83 1 13 chr4 164587343 164589947 -19698715 - L1P LINE L1 -3091 3055 483 17066 54 2 0 chr4 164589947 164592893 -19695769 + L1PA5 LINE L1 3201 6152 -2 12809 206 24 23 chr4 164592893 164593845 -19694817 - L1PA15 LINE L1 -795 6002 5053 1951 110 64 4 chr4 164593845 164594126 -19694536 - AluSq SINE Alu -15 298 1 12809 206 24 23 chr4 164594126 164596084 -19692578 - L1PA15 LINE L1 -1744 5053 3099 1378 147 173 67 chr4 164596084 164596402 -19692260 + MSTA LTR MaLR 1 369 -59 2025 124 0 30 chr4 164596402 164596746 -19691916 + AluSq SINE Alu 1 313 0 1378 147 173 67 chr4 164596746 164596814 -19691848 + MSTA LTR MaLR 369 428 0 12809 206 24 23 chr4 164596814 164596862 -19691800 - L1PA15 LINE L1 -3698 3099 3053 1593 157 0 0 chr4 164596862 164597091 -19691571 - AluSq SINE Alu -84 229 1 12809 206 24 23 chr4 164597091 164597357 -19691305 - L1PA15 LINE L1 -3744 3053 2772 994 221 8 0 chr4 164597368 164597622 -19691040 - L1PA15 LINE L1 -4721 2066 1811 * 3726 210 10 29 chr4 164597611 164598863 -19689799 - L1PA13 LINE L1 -4023 3561 2319 329 310 89 19 chr4 164599765 164600023 -19688639 - L1PA13 LINE L1 -7299 282 7 1709 212 5 37 chr4 164600377 164600754 -19687908 - MLT2B1 LTR ERVL 0 520 156 4218 172 78 27 chr4 164600755 164601044 -19687618 - L1MCa LINE L1 -5436 990 717 1981 190 0 3 chr4 164601044 164601392 -19687270 + MER7A DNA MER2_type 1 345 -1 4218 172 78 27 chr4 164601392 164602026 -19686636 - L1MCa LINE L1 -5709 717 20 554 236 34 6 chr4 164602027 164602205 -19686457 - L1MEc LINE L1 -4002 2394 2212 21 0 0 0 chr4 164602213 164602234 -19686428 + AT_rich Low_complexity Low_complexity 1 21 0 205 263 0 0 chr4 164602897 164602954 -19685708 + T-rich Low_complexity Low_complexity 2 58 0 1318 191 76 48 chr4 164603192 164603547 -19685115 - MLT1A1 LTR MaLR 0 365 1 463 316 66 15 chr4 164603726 164603922 -19684740 - MIR SINE MIR -23 239 34 23 33 0 0 chr4 164604154 164604184 -19684478 + AT_rich Low_complexity Low_complexity 1 30 0 2320 70 40 17 chr4 164604386 164604688 -19683974 - AluSg1 SINE Alu 0 309 1 299 342 95 62 chr4 164605101 164605809 -19682853 + L2 LINE L2 2235 2965 -349 195 258 0 61 chr4 164606061 164606127 -19682535 + L2 LINE L2 3251 3312 -1 749 303 73 9 chr4 164607524 164607857 -19680805 + L1MA6 LINE L1 522 1287 -6279 3119 227 58 17 chr4 164608494 164609784 -19678878 + L1MA6 LINE L1 2290 3620 -3945 1099 172 5 39 chr4 164609795 164609999 -19678663 + AluJo SINE Alu 93 289 -23 10276 198 37 30 chr4 164610020 164610427 -19678235 + L1MA6 LINE L1 3643 4046 -3673 871 138 0 0 chr4 164610427 164610550 -19678112 - FLAM_C SINE Alu -9 124 2 10276 198 37 30 chr4 164610550 164613058 -19675604 + L1MA6 LINE L1 4046 6537 -1182 1980 187 28 14 chr4 164613058 164613417 -19675245 + THE1B LTR MaLR 1 364 0 12142 89 1 0 chr4 164613417 164614995 -19673667 + THE1B-int LTR MaLR 1 1580 0 2106 135 63 14 chr4 164614995 164615342 -19673320 + THE1B LTR MaLR 1 364 0 10276 198 37 30 chr4 164615342 164616599 -19672063 + L1MA6 LINE L1 6536 7709 -10 23 68 0 0 chr4 164616621 164616665 -19671997 + AT_rich Low_complexity Low_complexity 1 44 0 59 46 0 0 chr4 164616919 164617006 -19671656 + AT_rich Low_complexity Low_complexity 1 87 0 300 208 58 0 chr4 164617339 164617459 -19671203 + (TA)n Simple_repeat Simple_repeat 1 127 0 1780 171 0 3 chr4 164618318 164618610 -19670052 + AluJb SINE Alu 1 291 -21 205 152 0 0 chr4 164618613 164618646 -19670016 + G-rich Low_complexity Low_complexity 1 33 0 742 230 42 39 chr4 164618646 164618981 -19669681 + Charlie2 DNA MER1_type 2524 2859 -3 230 264 109 60 chr4 164618981 164619180 -19669482 - Charlie7 DNA MER1_type -2403 209 1 225 333 25 0 chr4 164619793 164619874 -19668788 + MIR SINE MIR 178 260 -2 298 293 10 10 chr4 164619908 164620007 -19668655 - MER117 DNA MER1_type -82 115 17 2499 205 17 12 chr4 164620512 164621395 -19667267 + L1MA5 LINE L1 4979 5870 -430 723 194 10 44 chr4 164621398 164621604 -19667058 + L1MA5 LINE L1 6079 6277 -23 2138 218 84 29 chr4 164621777 164622268 -19666394 + L1MCa LINE L1 181 718 -5708 1456 257 0 3 chr4 164622268 164622614 -19666048 - MER7A DNA MER2_type -3 343 1 2138 218 84 29 chr4 164622614 164622774 -19665888 + L1MCa LINE L1 718 868 -5558 488 357 42 23 chr4 164623033 164623296 -19665366 + HAL1 LINE L1 1228 1495 -1012 637 277 77 5 chr4 164623309 164623529 -19665133 + MIR SINE MIR 13 248 -14 21 36 0 0 chr4 164623880 164623908 -19664754 + AT_rich Low_complexity Low_complexity 1 28 0 336 148 0 0 chr4 164623944 164624005 -19664657 + MLT1A2 LTR MaLR 9 69 -305 4393 89 83 56 chr4 164624109 164624848 -19663814 - L1PA13 LINE L1 -39 6124 5359 1814 161 7 0 chr4 164624848 164625152 -19663510 - AluSx SINE Alu -6 306 1 4393 89 83 56 chr4 164625152 164625231 -19663431 - L1PA13 LINE L1 -804 5359 5284 1550 167 20 0 chr4 164625953 164626247 -19662415 - L1MA6 LINE L1 0 6300 6001 5411 182 18 22 chr4 164627152 164628324 -19660338 + L1M1 LINE L1 27 1196 -6369 734 206 5 39 chr4 164628429 164628633 -19660029 + AluSg/x SINE Alu 100 296 -16 29 28 0 0 chr4 164631074 164631110 -19657552 + AT_rich Low_complexity Low_complexity 1 36 0 2982 230 10 31 chr4 164631914 164633038 -19655624 + L1PA13 LINE L1 1550 2660 -4137 335 298 133 48 chr4 164633145 164633477 -19655185 + L1ME4a LINE L1 5757 6116 -5 384 361 96 11 chr4 164634124 164634384 -19654278 + L2 LINE L2 133 414 -2900 1468 179 77 19 chr4 164634848 164635173 -19653489 + MLT1A1 LTR MaLR 1 344 -21 345 192 10 39 chr4 164635719 164635823 -19652839 + FLAM_A SINE Alu 10 110 -23 7946 188 25 13 chr4 164635861 164637509 -19651153 + L1P3 LINE L1 5 1672 -4789 778 75 27 54 chr4 164637626 164637693 -19650969 - L1P LINE L1 -735 5426 5359 2076 132 7 0 chr4 164637693 164637997 -19650665 - AluSx SINE Alu -6 306 1 778 75 27 54 chr4 164637997 164638076 -19650586 - L1P LINE L1 -802 5359 5284 213 269 202 10 chr4 164638973 164639077 -19649585 - MIR SINE MIR -1 261 138 407 271 0 0 chr4 164639163 164639259 -19649403 + MER21B LTR ERV1 1 96 -767 451 225 49 28 chr4 164639302 164639444 -19649218 + MER21B LTR ERV1 102 246 -617 1249 241 84 14 chr4 164639484 164639899 -19648763 + MER21B LTR ERV1 348 791 -72 486 167 35 18 chr4 164640655 164640769 -19647893 + L1MA5 LINE L1 5755 5870 -430 * 674 209 24 66 chr4 164640766 164640977 -19647685 + L1MA5 LINE L1 6076 6277 -23 345 344 0 0 chr4 164640979 164641110 -19647552 + AluJb SINE Alu 3 133 -169 753 216 5 10 chr4 164641197 164641391 -19647271 - L1M4 LINE L1 -3319 2827 2635 3738 117 97 53 chr4 164641955 164642732 -19645930 - L1PA13 LINE L1 -2 6161 5351 557 63 0 13 chr4 164642867 164642946 -19645716 + (GGAA)n Simple_repeat Simple_repeat 2 79 0 1010 233 102 12 chr4 164643724 164644059 -19644603 - MER21B LTR ERV1 -72 791 427 230 276 13 13 chr4 164644161 164644237 -19644425 - MER117 DNA MER1_type -105 92 17 539 224 62 36 chr4 164644664 164644856 -19643806 + MER3 DNA MER1_type 8 204 -5 909 281 9 13 chr4 164644872 164645103 -19643559 - MIR SINE MIR -24 238 9 528 272 48 57 chr4 164645978 164646206 -19642456 - MIR SINE MIR -14 248 23 284 234 217 71 chr4 164647013 164647113 -19641549 - MER113 DNA MER1_type? -7 514 430 1982 127 3 7 chr4 164647113 164647447 -19641215 + AluSx SINE Alu 1 333 0 284 234 217 71 chr4 164647447 164647682 -19640980 - MER113 DNA MER1_type? -91 430 129 298 319 125 25 chr4 164648829 164648989 -19639673 + L2 LINE L2 2623 2798 -516 209 303 20 61 chr4 164649134 164649233 -19639429 + MIR SINE MIR 45 139 -123 2154 135 87 18 chr4 164650365 164650758 -19637904 + MSTA LTR MaLR 9 428 0 3562 168 36 1 chr4 164650763 164651424 -19637238 + MSTA-int LTR MaLR 6 689 -962 834 136 34 0 chr4 164651424 164651542 -19637120 - FRAM SINE Alu -54 122 1 23 68 0 0 chr4 164651575 164651619 -19637043 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr4 164651681 164651702 -19636960 + AT_rich Low_complexity Low_complexity 1 21 0 280 301 75 25 chr4 164651738 164651977 -19636685 + HAL1b LINE L1 339 589 -759 27 49 0 0 chr4 164652239 164652280 -19636382 + AT_rich Low_complexity Low_complexity 1 41 0 280 27 27 0 chr4 164652470 164652507 -19636155 + U2 snRNA snRNA 1 38 -150 37 0 0 0 chr4 164652579 164652616 -19636046 + AT_rich Low_complexity Low_complexity 1 37 0 323 348 140 34 chr4 164653011 164653247 -19635415 - MIR SINE MIR 0 262 2 1338 201 36 59 chr4 164653418 164653860 -19634802 - LTR56 LTR ERV1 0 445 14 312 232 0 0 chr4 164653860 164653916 -19634746 + AluJo SINE Alu 1 56 -245 3206 86 14 5 chr4 164653916 164654356 -19634306 + MLT2A1 LTR ERVL 1 444 0 1481 171 8 23 chr4 164654356 164654614 -19634048 + AluJo SINE Alu 52 305 -7 3759 180 99 16 chr4 164655102 164655890 -19632772 + MER21B LTR ERV1 7 859 -4 186 337 45 22 chr4 164655926 164656015 -19632647 - L2 LINE L2 -31 3241 3151 354 205 0 0 chr4 164656051 164656134 -19632528 + GA-rich Low_complexity Low_complexity 4 86 0 451 244 40 10 chr4 164656157 164656362 -19632300 - MER101 LTR ERV1 -138 336 177 310 268 130 32 chr4 164656537 164656660 -19632002 - MIR SINE MIR -3 259 125 227 279 15 0 chr4 164656699 164656767 -19631895 - MIR SINE MIR -128 134 66 1728 212 130 9 chr4 164657188 164657651 -19631011 + MER101B LTR ERV1 1 519 -51 25 0 0 0 chr4 164658516 164658541 -19630121 + AT_rich Low_complexity Low_complexity 1 25 0 601 188 53 0 chr4 164658653 164658823 -19629839 + L1M1 LINE L1 3064 3242 -4323 * 3083 164 47 7 chr4 164658816 164659430 -19629232 + L1MA3 LINE L1 5591 6229 -76 559 150 38 53 chr4 164659469 164659602 -19629060 + L1MA3 LINE L1 6173 6303 -2 25 51 0 0 chr4 164659974 164660013 -19628649 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr4 164660180 164660201 -19628461 + AT_rich Low_complexity Low_complexity 1 21 0 543 247 210 5 chr4 164660259 164660445 -19628217 + MIR SINE MIR 18 241 -21 661 194 0 0 chr4 164660800 164660908 -19627754 + FLAM_A SINE Alu 1 108 -34 879 323 91 29 chr4 164661304 164662110 -19626552 + L2 LINE L2 2456 3313 0 2290 107 0 0 chr4 164662431 164662730 -19625932 - AluSq SINE Alu -14 299 1 752 282 100 30 chr4 164663093 164663561 -19625101 + LTR33 LTR ERVL 21 521 0 417 39 0 0 chr4 164664817 164664868 -19623794 + (CA)n Simple_repeat Simple_repeat 1 51 0 348 24 0 0 chr4 164664962 164665003 -19623659 + (CA)n Simple_repeat Simple_repeat 2 42 0 480 77 0 0 chr4 164665005 164665070 -19623592 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 479 263 13 13 chr4 164665276 164665428 -19623234 - L1MEd LINE L1 -5965 154 3 204 345 0 0 chr4 164665519 164665574 -19623088 + polypurine Low_complexity Low_complexity 2 56 0 21 36 0 0 chr4 164665578 164665606 -19623056 + AT_rich Low_complexity Low_complexity 1 28 0 2143 108 17 0 chr4 164665740 164666027 -19622635 + AluSx SINE Alu 1 292 -20 183 296 0 0 chr4 164667086 164667130 -19621532 - L2 LINE L2 -7 3265 3222 1670 143 25 79 chr4 164667140 164667332 -19621330 - AluJo SINE Alu -14 298 128 513 0 0 0 chr4 164667332 164667389 -19621273 + (TG)n Simple_repeat Simple_repeat 2 58 0 1670 143 25 79 chr4 164667389 164667511 -19621151 - AluJo SINE Alu -184 128 1 195 302 86 52 chr4 164668855 164668971 -19619691 - L2 LINE L2 -10 3262 3143 614 241 104 98 chr4 164669148 164669608 -19619054 + MLT1J LTR MaLR 1 463 -48 2147 112 7 23 chr4 164669888 164670193 -19618469 + AluSx SINE Alu 1 300 -12 563 280 34 58 chr4 164670454 164670598 -19618064 + LTR33 LTR ERVL 195 341 -180 2091 242 31 12 chr4 164670598 164671107 -19617555 - LTR40a LTR ERVL 0 519 1 563 280 34 58 chr4 164671107 164671287 -19617375 + LTR33 LTR ERVL 341 511 -10 208 317 98 24 chr4 164671292 164671415 -19617247 + MIR SINE MIR 105 236 -26 2057 126 0 17 chr4 164673582 164673883 -19614779 - AluSx SINE Alu -16 296 1 27 0 0 0 chr4 164674834 164674861 -19613801 + AT_rich Low_complexity Low_complexity 1 27 0 677 301 44 0 chr4 164674893 164675142 -19613520 - MIR SINE MIR 0 262 3 256 218 0 0 chr4 164675510 164675565 -19613097 + MLT1E LTR MaLR 30 84 -509 29 28 0 0 chr4 164677003 164677039 -19611623 + AT_rich Low_complexity Low_complexity 1 36 0 347 299 176 5 chr4 164677350 164677571 -19611091 + HAL1 LINE L1 44 302 -2205 508 327 82 13 chr4 164678201 164678521 -19610141 + L2 LINE L2 2874 3313 0 2158 120 13 0 chr4 164678987 164679286 -19609376 + AluSp SINE Alu 1 303 -10 224 289 103 41 chr4 164679364 164679461 -19609201 - L2 LINE L2 0 3272 3170 2207 110 0 0 chr4 164679639 164679931 -19608731 + AluSx SINE Alu 1 292 -20 1861 144 3 20 chr4 164680338 164680643 -19608019 + AluSg SINE Alu 1 300 -10 291 272 94 31 chr4 164681470 164681694 -19606968 + L1ME LINE L1 5588 5825 -296 511 331 96 11 chr4 164682598 164682858 -19605804 + L2 LINE L2 133 414 -2900 1564 166 77 19 chr4 164683322 164683647 -19605015 + MLT1A1 LTR MaLR 1 344 -21 256 338 81 22 chr4 164683676 164683812 -19604850 - L2 LINE L2 -2 3270 3127 6484 159 30 115 chr4 164684163 164685921 -19602741 + MER52A LTR ERV1 8 1534 -64 300 164 0 45 chr4 164685921 164685988 -19602674 + MER52A LTR ERV1 1692 1755 0 4713 82 0 12 chr4 164686279 164686928 -19601734 - L1PA13 LINE L1 -1 6162 5522 2600 126 60 27 chr4 164687458 164688027 -19600635 + MER4B LTR ERV1 1 765 -14 684 276 35 25 chr4 164688345 164688544 -19600118 - MIR SINE MIR -28 234 34 578 118 0 0 chr4 164688555 164688640 -19600022 - AluJ/FRAM SINE Alu -9 303 219 570 293 105 0 chr4 164688915 164689096 -19599566 - MIR SINE MIR -49 213 14 24 0 0 0 chr4 164689338 164689362 -19599300 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr4 164690550 164690575 -19598087 + AT_rich Low_complexity Low_complexity 1 25 0 22 56 0 0 chr4 164690736 164690772 -19597890 + AT_rich Low_complexity Low_complexity 1 36 0 2039 153 3 0 chr4 164691443 164691738 -19596924 - AluSx SINE Alu -16 296 1 27 0 0 0 chr4 164691967 164691994 -19596668 + AT_rich Low_complexity Low_complexity 1 27 0 235 204 0 20 chr4 164692584 164692633 -19596029 + L2 LINE L2 3174 3221 -92 268 275 94 7 chr4 164693953 164694091 -19594571 + MER103 DNA DNA 16 165 -1 188 299 21 72 chr4 164694243 164694340 -19594322 + MIR SINE MIR 109 200 -62 410 214 60 34 chr4 164694656 164694773 -19593889 + MIR SINE MIR 108 227 -35 775 280 44 8 chr4 164696191 164696441 -19592221 + MIR SINE MIR 3 261 -1 256 378 33 26 chr4 164696440 164696591 -19592071 - L2 LINE L2 -6 3266 3115 * 236 353 60 15 chr4 164696841 164696974 -19591688 - L2 LINE L2 -482 2832 2694 16172 133 47 73 chr4 164697591 164700894 -19587768 + L1M1 LINE L1 27 3244 -4321 3530 130 47 7 chr4 164700885 164701499 -19587163 + L1MA3 LINE L1 5591 6229 -76 * 617 143 45 45 chr4 164701538 164701671 -19586991 + L1MA3 LINE L1 6173 6305 0 2160 153 41 19 chr4 164701817 164702097 -19586565 + MSTA LTR MaLR 1 294 -134 2323 106 0 3 chr4 164702097 164702408 -19586254 + AluSq SINE Alu 1 310 -3 2160 153 41 19 chr4 164702408 164702546 -19586116 + MSTA LTR MaLR 294 428 0 494 190 10 10 chr4 164703180 164703280 -19585382 + MER58 DNA MER1_type 2319 2418 -2 1802 37 0 0 chr4 164703681 164703895 -19584767 + L1PA3 LINE L1 5939 6152 -3 285 162 27 14 chr4 164704409 164704483 -19584179 + (TA)n Simple_repeat Simple_repeat 2 76 0 26 0 0 0 chr4 164704495 164704521 -19584141 + AT_rich Low_complexity Low_complexity 1 26 0 26 30 0 0 chr4 164704756 164704789 -19583873 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr4 164705700 164705731 -19582931 + AT_rich Low_complexity Low_complexity 1 31 0 247 344 60 7 chr4 164706030 164706312 -19582350 - L1MDa LINE L1 -4583 1799 1503 316 224 51 61 chr4 164706389 164706487 -19582175 - L1MDa LINE L1 -5023 1361 1265 7867 207 37 46 chr4 164706508 164708406 -19580256 + ERVL-C1 LTR ERVL 1267 3147 -2617 4404 183 10 22 chr4 164708419 164709310 -19579352 + ERVL-C1 LTR ERVL 4359 5238 -526 1253 196 19 48 chr4 164709312 164709628 -19579034 + MLT1C LTR MaLR 6 312 -155 1426 169 24 28 chr4 164709631 164709921 -19578741 + MER49 LTR ERV1 1 289 -634 229 204 0 20 chr4 164709941 164709990 -19578672 + MER4E LTR ERV1 115 162 -617 1323 206 30 42 chr4 164710001 164710042 -19578620 + MER4D LTR ERV1 547 587 -316 2158 124 0 10 chr4 164710042 164710356 -19578306 - AluY SINE Alu 0 311 1 1323 206 30 42 chr4 164710356 164710649 -19578013 + MER4D LTR ERV1 587 877 -26 362 158 26 13 chr4 164710659 164710735 -19577927 + MER4D LTR ERV1 827 903 0 594 211 15 8 chr4 164710749 164710882 -19577780 + MLT1C LTR MaLR 326 459 -8 1817 211 95 9 chr4 164710891 164711355 -19577307 + ERVL-C1 LTR ERVL 5254 5757 -7 1379 234 5 49 chr4 164711358 164711769 -19576893 + MLT2C1 LTR ERVL 5 397 0 477 278 40 33 chr4 164711769 164712042 -19576620 + L1ME3 LINE L1 4561 4835 -1311 392 164 195 0 chr4 164712114 164712242 -19576420 + L1ME3 LINE L1 5320 5472 -690 870 235 0 6 chr4 164712242 164712425 -19576237 + AluJo SINE Alu 118 299 -13 266 271 5 47 chr4 164712426 164712618 -19576044 + L1ME3 LINE L1 5498 5712 -450 257 344 48 65 chr4 164712700 164712886 -19575776 + L2 LINE L2 2889 3071 -201 672 246 58 71 chr4 164712984 164713395 -19575267 + L1ME3 LINE L1 5753 6158 -4 663 183 9 0 chr4 164713886 164714001 -19574661 + FLAM_A SINE Alu 1 116 -17 40907 33 22 5 chr4 164714173 164720222 -19568440 + L1PA2 LINE L1 1 6152 -3 389 256 98 67 chr4 164720382 164720617 -19568045 + L1ME4a LINE L1 5603 5850 -271 213 65 0 0 chr4 164720617 164720648 -19568014 + (CATAT)n Simple_repeat Simple_repeat 3 33 0 389 256 98 67 chr4 164720648 164720709 -19567953 + L1ME4a LINE L1 5850 5908 -213 1710 181 3 3 chr4 164721103 164721428 -19567234 + HUERS-P1 LTR ERV1 5906 6230 -33 3207 8 16 0 chr4 164721428 164721812 -19566850 + L1HS LINE L1 5766 6155 0 273 109 0 0 chr4 164721815 164721861 -19566801 + (A)n Simple_repeat Simple_repeat 1 46 0 224 123 55 27 chr4 164721932 164722005 -19566657 + A-rich Low_complexity Low_complexity 2 76 0 3693 104 0 58 chr4 164722032 164722655 -19566007 + LTR8 LTR ERV1 1 587 -104 1094 314 131 55 chr4 164722700 164722815 -19565847 + L2 LINE L2 1783 1888 -1426 1759 166 32 0 chr4 164722815 164723092 -19565570 + AluJo SINE Alu 1 286 -26 1094 314 131 55 chr4 164723092 164724066 -19564596 + L2 LINE L2 1888 2955 -359 190 262 119 95 chr4 164724227 164724353 -19564309 + L2 LINE L2 3175 3303 -10 498 265 157 62 chr4 164724393 164724632 -19564030 + L1ME4a LINE L1 5573 5788 -333 828 107 0 0 chr4 164724632 164724753 -19563909 + L1MA2 LINE L1 6184 6304 0 498 265 157 62 chr4 164724753 164724966 -19563696 + L1ME4a LINE L1 5788 6068 -53 510 310 91 24 chr4 164725789 164726076 -19562586 + L3 LINE CR1 1101 1406 -171 322 263 165 23 chr4 164726577 164726710 -19561952 + MIR SINE MIR 111 262 0 498 329 71 0 chr4 164726957 164727127 -19561535 - L2 LINE L2 -865 2449 2268 579 264 80 6 chr4 164727436 164727599 -19561063 - L2 LINE L2 -872 2442 2268 201 175 0 0 chr4 164727824 164727864 -19560798 + T-rich Low_complexity Low_complexity 1 40 0 441 0 0 0 chr4 164727933 164727982 -19560680 + (TG)n Simple_repeat Simple_repeat 2 50 0 207 314 100 0 chr4 164728163 164728233 -19560429 + MIR SINE MIR 26 102 -160 389 310 127 32 chr4 164729089 164729611 -19559051 + L1ME4a LINE L1 5333 5910 -211 1823 171 0 17 chr4 164729611 164729909 -19558753 + AluJb SINE Alu 3 295 -17 426 85 0 0 chr4 164729938 164729997 -19558665 + (CA)n Simple_repeat Simple_repeat 2 60 0 287 408 0 0 chr4 164730335 164730465 -19558197 - L3 LINE CR1 -454 1123 994 22 35 0 0 chr4 164730546 164730575 -19558087 + AT_rich Low_complexity Low_complexity 1 29 0 5466 84 11 0 chr4 164730767 164731502 -19557160 + L1PA10 LINE L1 5421 6163 -5 845 118 0 0 chr4 164731888 164731998 -19556664 + FLAM_C SINE Alu 1 110 -33 207 0 0 0 chr4 164732001 164732024 -19556638 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 2000 100 0 15 chr4 164732154 164732423 -19556239 + AluSq SINE Alu 1 265 -48 705 56 0 0 chr4 164732439 164732529 -19556133 + (GGAA)n Simple_repeat Simple_repeat 1 90 0 483 252 16 16 chr4 164732632 164732755 -19555907 - AluJb SINE Alu -187 125 3 1005 161 5 47 chr4 164732757 164732968 -19555694 - L1MA5 LINE L1 -23 6277 6076 * 3422 175 14 9 chr4 164732965 164734122 -19554540 - L1MA5 LINE L1 -430 5870 4705 766 254 94 25 chr4 164734124 164734529 -19554133 + L1ME2 LINE L1 2865 3297 -2849 1569 201 0 23 chr4 164735306 164735610 -19553052 + AluJo SINE Alu 1 297 -15 5419 243 75 26 chr4 164735666 164736064 -19552598 + L1ME2 LINE L1 3305 3682 -2482 1991 147 0 0 chr4 164736064 164736380 -19552282 + AluSx SINE Alu 1 316 0 5419 243 75 26 chr4 164736380 164737776 -19550886 + L1ME2 LINE L1 3682 5007 -1157 2083 109 3 3 chr4 164737776 164738061 -19550601 + AluY SINE Alu 1 285 -26 5419 243 75 26 chr4 164738061 164738765 -19549897 + L1ME2 LINE L1 5007 5955 -209 1902 137 0 0 chr4 164738765 164739036 -19549626 + AluSq SINE Alu 29 299 -14 5419 243 75 26 chr4 164739036 164739199 -19549463 + L1ME2 LINE L1 5955 6108 -56 262 126 57 8 chr4 164739248 164739314 -19549348 + L1ME3 LINE L1 6092 6162 0 249 231 0 66 chr4 164739738 164739829 -19548833 + L1ME4a LINE L1 5983 6067 -54 329 290 176 21 chr4 164740205 164740398 -19548264 - MIR SINE MIR -14 248 26 790 347 74 26 chr4 164741153 164741762 -19546900 - L2 LINE L2 -215 3057 2421 353 211 28 0 chr4 164741943 164742014 -19546648 + LTR16C LTR ERVL 409 481 -10 440 253 201 33 chr4 164742154 164742427 -19546235 - L2 LINE L2 0 3313 2995 303 289 47 80 chr4 164742668 164743242 -19545420 + HAL1 LINE L1 945 1499 -1008 776 264 73 0 chr4 164743245 164743465 -19545197 + MIR SINE MIR 13 248 -14 314 276 35 55 chr4 164743683 164743828 -19544834 + HAL1b LINE L1 732 873 -475 966 194 32 139 chr4 164743872 164744304 -19544358 + MLT1B LTR MaLR 1 386 -4 625 232 53 71 chr4 164744372 164744712 -19543950 + L1MC5 LINE L1 7035 7368 -593 289 306 51 20 chr4 164744949 164745047 -19543615 + MLT1J LTR MaLR 103 203 -308 473 274 94 50 chr4 164745087 164745288 -19543374 + MLT1J2 LTR MaLR 241 450 0 2520 58 0 0 chr4 164745313 164745607 -19543055 + AluY SINE Alu 1 294 -17 361 242 87 50 chr4 164745656 164745817 -19542845 - MER104 DNA Tc2 -13 167 1 585 237 0 0 chr4 164746125 164746243 -19542419 + FLAM_C SINE Alu 1 118 -25 218 175 0 35 chr4 164746252 164746309 -19542353 + G-rich Low_complexity Low_complexity 2 56 0 21 0 0 0 chr4 164746860 164746881 -19541781 + AT_rich Low_complexity Low_complexity 1 21 0 476 68 14 0 chr4 164747264 164747337 -19541325 + (TGGA)n Simple_repeat Simple_repeat 3 76 0 2311 48 6 51 chr4 164747855 164748170 -19540492 + AluY SINE Alu 1 301 -10 623 253 58 5 chr4 164749665 164749855 -19538807 - MIR SINE MIR -10 252 53 1020 182 44 0 chr4 164750752 164750933 -19537729 + MLT1D LTR MaLR 1 189 -316 308 215 7 168 chr4 164750934 164751083 -19537579 + MLT1D-int LTR MaLR 536 660 -711 1757 241 56 74 chr4 164751094 164751701 -19536961 + MLT1D-int LTR MaLR 773 1368 -3 1921 183 152 5 chr4 164751713 164752140 -19536522 + MLT1D LTR MaLR 16 505 0 2261 106 13 0 chr4 164752227 164752530 -19536132 - AluSx SINE Alu -3 309 3 494 183 0 0 chr4 164752772 164752865 -19535797 - AluJ/FRAM SINE Alu 0 312 220 356 337 49 6 chr4 164752936 164753099 -19535563 + L2 LINE L2 2603 2772 -542 352 274 157 30 chr4 164753138 164753335 -19535327 + MIR SINE MIR 1 222 -40 896 302 101 16 chr4 164753548 164754069 -19534593 - L2 LINE L2 -4 3309 2748 24 53 0 0 chr4 164754090 164754128 -19534534 + AT_rich Low_complexity Low_complexity 1 38 0 1380 133 226 0 chr4 164754359 164754638 -19534024 + MER2 DNA MER2_type 2 343 -1 490 62 16 0 chr4 164855617 164855681 -19432981 - AluJ/FLAM SINE Alu -246 66 2 1748 182 3 3 chr4 164856063 164856360 -19432302 + AluJb SINE Alu 1 297 -15 4093 45 0 2 chr4 164856369 164856853 -19431809 + L1PA7 LINE L1 5465 5947 -207 822 152 0 22 chr4 164857098 164857236 -19431426 + AluJo SINE Alu 1 135 -177 864 168 27 0 chr4 164857345 164857494 -19431168 + FRAM SINE Alu 24 176 0 224 298 170 6 chr4 164857535 164857706 -19430956 - L2 LINE L2 -896 2418 2220 255 152 0 0 chr4 164858177 164858223 -19430439 + T-rich Low_complexity Low_complexity 1 46 0 1887 74 12 4 chr4 164858409 164858652 -19430010 + L1PA7 LINE L1 5905 6149 -5 388 271 76 48 chr4 164858777 164858987 -19429675 - MIR SINE MIR -17 245 30 21 36 0 0 chr4 164859800 164859828 -19428834 + AT_rich Low_complexity Low_complexity 1 28 0 1021 218 0 0 chr4 164859889 164860054 -19428608 - FAM SINE Alu -10 165 1 2180 116 20 0 chr4 164860982 164861283 -19427379 + AluJb SINE Alu 1 307 -5 25 0 0 0 chr4 164861806 164861831 -19426831 + AT_rich Low_complexity Low_complexity 1 25 0 1496 158 11 23 chr4 164862406 164862672 -19425990 - AluJb SINE Alu -17 295 33 415 225 174 14 chr4 164862929 164863067 -19425595 + MIR SINE MIR 37 196 -66 583 188 7 7 chr4 164863798 164863936 -19424726 + (CA)n Simple_repeat Simple_repeat 2 139 0 240 313 36 0 chr4 164864138 164864221 -19424441 + MIR SINE MIR 177 262 0 1865 189 49 6 chr4 164864258 164864607 -19424055 - MLT1A1 LTR MaLR -1 364 1 232 153 306 12 chr4 164864667 164864752 -19423910 - MER112 DNA MER1_type -5 255 146 264 59 0 0 chr4 164866206 164866240 -19422422 + (GGGTG)n Simple_repeat Simple_repeat 3 36 0 206 236 28 56 chr4 164866302 164866374 -19422288 + MIR3 SINE MIR 103 172 -36 231 167 0 0 chr4 164866617 164866659 -19422003 - LTR66 LTR ERVL -171 439 398 297 167 0 0 chr4 164866659 164866713 -19421949 + (TA)n Simple_repeat Simple_repeat 2 55 0 230 178 0 0 chr4 164866713 164866758 -19421904 - LTR66 LTR ERVL -171 439 395 228 149 0 43 chr4 164866765 164866812 -19421850 - Charlie7 DNA MER1_type -65 2547 2503 2330 96 0 0 chr4 164866828 164867121 -19421541 + AluSx SINE Alu 18 310 -2 2281 116 38 30 chr4 164868187 164868559 -19420103 + THE1C LTR MaLR 1 375 0 260 273 124 60 chr4 164868856 164869355 -19419307 + L1M4 LINE L1 4412 4942 -1204 2196 132 0 0 chr4 164869419 164869723 -19418939 + AluSg SINE Alu 2 305 -5 243 265 136 30 chr4 164871223 164871355 -19417307 + MIR SINE MIR 34 179 -83 233 203 319 0 chr4 164871636 164871705 -19416957 - MIR SINE MIR -13 249 159 244 236 218 36 chr4 164872225 164872335 -19416327 + MIR3 SINE MIR 10 139 -69 252 250 12 0 chr4 164872841 164872925 -19415737 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 987 193 118 0 chr4 164873340 164873527 -19415135 - MER3 DNA MER1_type 0 209 1 2715 166 26 2 chr4 164874207 164874676 -19413986 + L1MC1 LINE L1 5853 6332 -1 30 59 0 0 chr4 164874684 164874735 -19413927 + AT_rich Low_complexity Low_complexity 1 51 0 382 198 24 40 chr4 164874924 164875050 -19413612 - L1ME3A LINE L1 -202 5968 5845 626 241 29 24 chr4 164875194 164875364 -19413298 + MER58B DNA MER1_type 171 341 0 2277 117 0 0 chr4 164876834 164877143 -19411519 + AluSx SINE Alu 1 309 -3 2179 108 30 0 chr4 164877623 164877918 -19410744 + AluSx SINE Alu 1 304 -8 234 219 16 16 chr4 164878274 164878338 -19410324 + (TATATG)n Simple_repeat Simple_repeat 1 64 0 698 204 15 15 chr4 164878862 164878994 -19409668 + FLAM_C SINE Alu 2 133 -10 760 294 42 0 chr4 164879004 164879218 -19409444 + MIR SINE MIR 36 258 -4 224 171 0 0 chr4 164879220 164879255 -19409407 - L2 LINE L2 -15 3298 3264 249 119 0 0 chr4 164880645 164880687 -19407975 + (TG)n Simple_repeat Simple_repeat 2 43 0 4269 219 73 9 chr4 164880874 164881978 -19406684 + L1M4 LINE L1 3729 4903 -1243 564 152 10 0 chr4 164882082 164882181 -19406481 + L1PA16 LINE L1 6050 6149 -17 368 278 87 0 chr4 164882181 164882296 -19406366 + MIR SINE MIR 136 260 -2 2544 70 0 0 chr4 164882653 164882955 -19405707 + AluSc SINE Alu 1 302 -7 288 0 0 0 chr4 164883848 164883880 -19404782 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 440 239 80 0 chr4 164883923 164884036 -19404626 + MIR SINE MIR 71 192 -70 1236 139 55 10 chr4 164885387 164885589 -19403073 - AluJo SINE Alu -18 294 84 367 268 134 0 chr4 164885650 164885747 -19402915 - L2 LINE L2 -8 3305 3196 2256 102 3 0 chr4 164886375 164886678 -19401984 + AluSx SINE Alu 1 304 -8 214 222 62 49 chr4 164887047 164887128 -19401534 - L2 LINE L2 0 3272 3191 2499 78 10 0 chr4 164887210 164887518 -19401144 + AluSp SINE Alu 1 311 -2 1546 153 71 15 chr4 164890826 164891094 -19397568 + AluJo SINE Alu 1 283 -29 965 261 4 4 chr4 164891871 164892097 -19396565 + MIR SINE MIR 36 261 -1 314 210 75 105 chr4 164892323 164892523 -19396139 - HAL1 LINE L1 -20 2487 2294 283 327 65 0 chr4 164892585 164892692 -19395970 + MIR3 SINE MIR 66 179 -29 383 308 138 74 chr4 164892754 164893189 -19395473 - MLT1K LTR MaLR -92 496 34 241 307 128 28 chr4 164894683 164894901 -19393761 - L2 LINE L2 -1157 2157 1918 1543 141 9 0 chr4 164897117 164897337 -19391325 - AluJo SINE Alu -90 222 1 2823 254 119 77 chr4 164897407 164898960 -19389702 - HAL1 LINE L1 -597 1910 292 247 269 0 0 chr4 164899128 164899180 -19389482 - HAL1 LINE L1 -2455 52 1 305 345 36 0 chr4 164899256 164899366 -19389296 + MIR SINE MIR 65 178 -84 1269 129 137 0 chr4 164900917 164901165 -19387497 - L1MA4 LINE L1 -1 6299 6018 685 155 0 0 chr4 164901486 164901583 -19387079 - FLAM_C SINE Alu -24 119 23 2337 66 0 10 chr4 164901608 164901909 -19386753 - AluY SINE Alu -13 298 1 1079 129 0 0 chr4 164902650 164902797 -19385865 + FRAM SINE Alu 1 146 -30 220 53 53 0 chr4 164902799 164902837 -19385825 + GA-rich Low_complexity Low_complexity 2 41 0 2375 97 0 0 chr4 164906339 164906647 -19382015 - AluSx SINE Alu -4 308 1 2911 131 24 2 chr4 164906866 164907323 -19381339 - L1MA4A LINE L1 -323 5980 5514 1876 128 47 0 chr4 164907324 164907621 -19381041 + L1MA4A LINE L1 5981 6291 -12 180 0 0 0 chr4 164908402 164908422 -19380240 + (TG)n Simple_repeat Simple_repeat 1 20 0 1738 158 6 32 chr4 164908448 164908764 -19379898 + AluJo SINE Alu 1 308 -4 204 200 0 0 chr4 164908770 164908805 -19379857 + polypurine Low_complexity Low_complexity 1 35 0 306 330 8 42 chr4 164909947 164910065 -19378597 + L2 LINE L2 3159 3272 0 257 237 186 34 chr4 164911351 164911444 -19377218 - MIR3 SINE MIR -14 194 84 651 286 62 50 chr4 164911444 164911473 -19377189 + MIR SINE MIR 1 28 -234 2412 138 31 0 chr4 164911473 164911828 -19376834 + MER47A DNA MER2_type 1 366 0 651 286 62 50 chr4 164911828 164912057 -19376605 + MIR SINE MIR 28 262 0 23 0 0 0 chr4 164912710 164912733 -19375929 + AT_rich Low_complexity Low_complexity 1 23 0 1180 48 0 0 chr4 164913084 164913230 -19375432 + AluY SINE Alu 166 311 0 260 302 123 9 chr4 164913293 164913399 -19375263 + L2 LINE L2 3153 3270 -2 254 312 64 18 chr4 164914448 164914557 -19374105 - MIR3 SINE MIR -3 205 92 829 193 12 30 chr4 164915015 164915181 -19373481 + MER5A DNA MER1_type 1 163 -26 1697 199 19 13 chr4 164915300 164915616 -19373046 - MLT1E LTR MaLR 0 593 276 3700 111 16 12 chr4 164915737 164916296 -19372366 - L1PA16 LINE L1 -266 5900 5340 423 266 62 9 chr4 164916296 164916409 -19372253 - MIR SINE MIR -115 147 29 1794 163 3 7 chr4 164918152 164918446 -19370216 + AluJb SINE Alu 15 307 -5 1439 156 59 53 chr4 164919395 164919716 -19368946 - MER33 DNA MER1_type -1 323 1 1935 120 42 3 chr4 164920179 164920463 -19368199 + AluSx SINE Alu 1 295 -17 874 179 9 58 chr4 164921115 164921296 -19367366 - L1M4 LINE L1 -968 5178 5009 1677 148 54 17 chr4 164921296 164921593 -19367069 - AluJo SINE Alu -4 308 1 874 179 9 58 chr4 164921593 164921635 -19367027 - L1M4 LINE L1 -1137 5009 4966 1511 175 82 11 chr4 164921804 164922084 -19366578 - AluJb SINE Alu -12 300 1 1771 108 8 8 chr4 164923824 164924073 -19364589 + AluSc SINE Alu 47 295 -14 286 350 166 29 chr4 164925346 164925689 -19362973 + L2 LINE L2 2910 3299 -14 272 105 0 0 chr4 164925795 164925833 -19362829 + LTR33 LTR ERVL 3 40 -481 555 307 18 0 chr4 164925833 164925996 -19362666 - MIR SINE MIR -27 235 70 712 178 0 0 chr4 164926324 164926431 -19362231 + U6 snRNA snRNA 1 107 0 283 116 0 0 chr4 164926446 164926489 -19362173 - MER116 DNA Mariner -13 67 25 204 196 130 0 chr4 164927255 164927301 -19361361 + L2 LINE L2 3254 3305 -8 1626 186 7 10 chr4 164927329 164927625 -19361037 + AluJo SINE Alu 1 295 -17 2536 81 0 0 chr4 164927806 164928114 -19360548 + AluSg SINE Alu 1 308 -2 923 298 86 43 chr4 164929270 164929827 -19358835 - MLT1L LTR MaLR -4 611 31 252 0 0 0 chr4 164930108 164930136 -19358526 + (TG)n Simple_repeat Simple_repeat 1 28 0 2286 101 0 0 chr4 164930137 164930433 -19358229 - AluSx SINE Alu -16 296 1 700 124 0 0 chr4 164930651 164930748 -19357914 - L1PA16 LINE L1 -296 5870 5774 473 200 35 0 chr4 164930748 164930833 -19357829 - MLT1E LTR MaLR -455 138 51 22 0 0 0 chr4 164930866 164930888 -19357774 + AT_rich Low_complexity Low_complexity 1 22 0 225 65 0 0 chr4 164931324 164931355 -19357307 + (TG)n Simple_repeat Simple_repeat 2 32 0 2357 98 3 0 chr4 164931356 164931651 -19357011 - AluSp SINE Alu -17 296 1 313 284 10 20 chr4 164931806 164931908 -19356754 + MIR SINE MIR 31 131 -131 1729 138 28 7 chr4 164932444 164932727 -19355935 + AluJb SINE Alu 15 303 -9 230 320 10 21 chr4 164933665 164933762 -19354900 + CT-rich Low_complexity Low_complexity 3 98 0 2051 243 45 16 chr4 164933809 164934316 -19354346 + MLT1F LTR MaLR 6 527 -15 774 292 68 57 chr4 164935129 164935291 -19353371 - L2 LINE L2 -38 3275 3116 2569 57 0 3 chr4 164935291 164935592 -19353070 + AluY SINE Alu 1 300 -11 774 292 68 57 chr4 164935592 164936138 -19352524 - L2 LINE L2 -197 3116 2545 1237 276 132 28 chr4 164936861 164937568 -19351094 - L2 LINE L2 -801 2513 1734 2173 108 3 0 chr4 164938130 164938417 -19350245 + AluSx SINE Alu 1 288 -24 2032 114 24 0 chr4 164938888 164939178 -19349484 + AluSx SINE Alu 2 298 -14 1305 123 15 167 chr4 164940584 164940926 -19347736 - AluSx SINE Alu -20 292 3 253 204 0 0 chr4 164941309 164941353 -19347309 + AluJ/monomer SINE Alu 1 44 -256 2006 141 0 0 chr4 164941472 164941755 -19346907 - AluSx SINE Alu -29 283 1 508 206 24 16 chr4 164941757 164941883 -19346779 + L1MA10 LINE L1 6205 6331 -3 214 318 206 0 chr4 164942540 164942666 -19345996 + MIR SINE MIR 2 153 -109 299 293 24 0 chr4 164943295 164943377 -19345285 + CT-rich Low_complexity Low_complexity 3 86 0 251 200 231 0 chr4 164943414 164943479 -19345183 - L2 LINE L2 0 3313 3234 574 273 40 6 chr4 164943930 164944106 -19344556 + MIR SINE MIR 9 190 -72 2087 129 3 16 chr4 164945114 164945424 -19343238 - AluSx SINE Alu -6 306 1 1618 107 45 4 chr4 164947081 164947325 -19341337 + AluSc SINE Alu 1 254 -55 1458 114 5 5 chr4 164947327 164947529 -19341133 + AluSc SINE Alu 97 298 -11 266 250 9 65 chr4 164948090 164948198 -19340464 - L2 LINE L2 -214 3058 2957 2394 95 3 0 chr4 164948355 164948659 -19340003 + AluSp SINE Alu 1 305 -8 679 313 51 62 chr4 164948869 164949399 -19339263 + L3 LINE CR1 859 1382 -195 276 272 114 32 chr4 164949407 164949565 -19339097 - MIR3 SINE MIR -18 190 20 228 388 34 0 chr4 164949606 164949753 -19338909 + L3 LINE CR1 1406 1557 -20 543 92 0 0 chr4 164949858 164949934 -19338728 - MER41B LTR ERV1 -88 547 472 380 125 0 0 chr4 164950387 164950443 -19338219 - Alu SINE Alu -243 56 1 180 0 0 0 chr4 164950457 164950477 -19338185 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1182 109 158 5 chr4 164950783 164950967 -19337695 - AluSg/x SINE Alu 0 312 101 387 113 75 0 chr4 164951534 164951614 -19337048 + L1MA7 LINE L1 6206 6291 0 861 217 0 0 chr4 164951620 164951777 -19336885 - FRAM SINE Alu -12 164 8 662 216 207 14 chr4 164951979 164952114 -19336548 + MIR SINE MIR 8 116 -146 195 42 0 0 chr4 164952114 164952138 -19336524 + (TAA)n Simple_repeat Simple_repeat 3 26 0 662 216 207 14 chr4 164952138 164952215 -19336447 + MIR SINE MIR 116 261 -1 189 0 0 0 chr4 164955217 164955238 -19333424 + (T)n Simple_repeat Simple_repeat 1 21 0 561 250 91 36 chr4 164955564 164955784 -19332878 - MIR SINE MIR 0 262 31 318 280 114 15 chr4 164956093 164956225 -19332437 - MIR SINE MIR -71 191 47 1694 122 70 3 chr4 164957591 164957878 -19330784 - L1MA5 LINE L1 -2 6298 5993 2391 83 0 7 chr4 164958133 164958433 -19330229 - AluSg SINE Alu -12 298 1 463 294 98 10 chr4 164959503 164959707 -19328955 + MIR SINE MIR 22 243 -19 2137 114 3 3 chr4 164960863 164961160 -19327502 + AluSg SINE Alu 1 297 -13 194 255 64 43 chr4 164962597 164962691 -19325971 - MIR3 SINE MIR -1 207 112 2427 95 0 0 chr4 164963052 164963356 -19325306 + AluSx SINE Alu 1 304 -8 1656 145 71 28 chr4 164963362 164963644 -19325018 + AluJb SINE Alu 1 294 -18 255 31 0 0 chr4 164964082 164964114 -19324548 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 2263 112 0 0 chr4 164967560 164967855 -19320807 + AluSg SINE Alu 1 295 -15 1165 133 0 0 chr4 164968794 164968967 -19319695 - AluSg/x SINE Alu -4 308 136 529 309 27 5 chr4 164970661 164970849 -19317813 - MIR SINE MIR -12 250 59 614 224 19 71 chr4 164970851 164971061 -19317601 - L2 LINE L2 -2 3311 3113 808 255 73 38 chr4 164971318 164971659 -19317003 - L2 LINE L2 -1690 1624 1272 216 0 0 0 chr4 164971771 164971795 -19316867 + (T)n Simple_repeat Simple_repeat 1 24 0 1721 171 3 7 chr4 164972061 164972347 -19316315 - AluJb SINE Alu -18 294 10 230 261 0 36 chr4 164974241 164974352 -19314310 + C-rich Low_complexity Low_complexity 5 111 0 217 317 10 10 chr4 164974572 164974673 -19313989 + (CCG)n Simple_repeat Simple_repeat 1 101 0 413 290 161 5 chr4 164975129 164975315 -19313347 - MIR SINE MIR -27 235 21 1742 183 7 0 chr4 164976608 164976893 -19311769 - AluJo SINE Alu -25 287 1 2476 143 23 39 chr4 164980468 164980534 -19308128 - Tigger2a DNA MER2_type -2275 433 367 2313 110 0 0 chr4 164980534 164980835 -19307827 + AluSc SINE Alu 1 301 -8 2476 143 23 39 chr4 164980835 164981208 -19307454 - Tigger2a DNA MER2_type -2341 367 1 1948 137 3 35 chr4 164981275 164981359 -19307303 - MER47A DNA MER2_type -1957 366 281 2352 87 3 3 chr4 164981359 164981657 -19307005 + AluSx SINE Alu 1 298 -14 1948 137 3 35 chr4 164981657 164981887 -19306775 - MER47A DNA MER2_type -2042 281 62 2175 103 7 0 chr4 164982046 164982379 -19306283 - AluSq SINE Alu 0 335 1 1923 147 0 20 chr4 164982702 164983002 -19305660 - AluJb SINE Alu -18 294 1 204 263 26 0 chr4 164983227 164983303 -19305359 + (TTA)n Simple_repeat Simple_repeat 3 80 0 301 286 71 0 chr4 164984230 164984328 -19304334 - MIR SINE MIR -110 152 48 2324 144 38 33 chr4 164984815 164984884 -19303778 - MSTB LTR MaLR 0 426 359 2363 91 3 3 chr4 164984884 164985191 -19303471 + AluSq SINE Alu 1 307 -6 2324 144 38 33 chr4 164985191 164985545 -19303117 - MSTB LTR MaLR -67 359 1 2000 133 3 7 chr4 164986825 164987118 -19301544 + AluSx SINE Alu 1 292 -20 262 210 87 80 chr4 164987521 164987659 -19301003 - MLT1L LTR MaLR -11 604 466 1064 134 0 41 chr4 164987742 164987913 -19300749 + AluSg/x SINE Alu 134 297 -15 1749 150 58 24 chr4 164988018 164988312 -19300350 - AluJo SINE Alu -8 304 1 259 235 257 32 chr4 164989357 164989544 -19299118 - L2 LINE L2 0 3313 3085 24 32 0 0 chr4 164991817 164991848 -19296814 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 164991950 164991971 -19296691 + AT_rich Low_complexity Low_complexity 1 21 0 1802 151 14 3 chr4 164992551 164992836 -19295826 + AluJo SINE Alu 1 288 -24 1145 106 62 0 chr4 164993102 164993262 -19295400 - AluSc SINE Alu -12 297 128 2142 99 16 7 chr4 164993490 164993793 -19294869 + AluSq SINE Alu 1 306 -7 2341 99 3 3 chr4 164995371 164995674 -19292988 + AluSq SINE Alu 1 303 -10 558 241 114 38 chr4 164996699 164996935 -19291727 + MIR SINE MIR 9 262 0 1305 89 0 6 chr4 164999716 164999885 -19288777 - AluSg SINE Alu -142 168 1 22 56 0 0 chr4 165000237 165000273 -19288389 + AT_rich Low_complexity Low_complexity 1 36 0 3224 139 60 22 chr4 165000378 165000456 -19288206 + L1MA8 LINE L1 5594 5668 -623 2009 108 54 20 chr4 165000456 165000751 -19287911 + AluSg SINE Alu 1 305 -5 3224 139 60 22 chr4 165000751 165001341 -19287321 + L1MA8 LINE L1 5668 6287 -4 244 257 64 36 chr4 165001412 165001552 -19287110 + L1MC4 LINE L1 7743 7886 -156 858 261 62 26 chr4 165001867 165002208 -19286454 - L2 LINE L2 -1690 1624 1272 225 0 0 0 chr4 165002321 165002346 -19286316 + (T)n Simple_repeat Simple_repeat 1 25 0 1846 159 3 7 chr4 165002610 165002905 -19285757 - AluJb SINE Alu -18 294 1 338 341 146 33 chr4 165003061 165003521 -19285141 - L2 LINE L2 -648 2666 2155 2180 106 0 0 chr4 165004498 165004801 -19283861 - AluSg SINE Alu 0 303 1 1414 183 81 19 chr4 165009010 165009333 -19279329 - MER2 DNA MER2_type -1 343 1 455 317 102 16 chr4 165010786 165011089 -19277573 + L1MC4a LINE L1 5561 5889 -1919 24 0 0 0 chr4 165011311 165011335 -19277327 + AT_rich Low_complexity Low_complexity 1 24 0 837 98 140 0 chr4 165011336 165011479 -19277183 - L1MA3 LINE L1 -2 6303 6141 312 27 0 0 chr4 165011616 165011653 -19277009 + (TG)n Simple_repeat Simple_repeat 2 38 0 252 292 0 0 chr4 165011907 165011972 -19276690 + L2 LINE L2 3249 3313 0 228 257 0 0 chr4 165011977 165012047 -19276615 + (TA)n Simple_repeat Simple_repeat 1 70 0 1816 135 145 56 chr4 165012303 165012554 -19276108 - MSTA LTR MaLR 0 428 128 2052 134 7 10 chr4 165012554 165012859 -19275803 + AluSx SINE Alu 1 304 -8 1816 135 145 56 chr4 165012859 165013000 -19275662 - MSTA LTR MaLR -300 128 1 470 333 84 71 chr4 165013010 165013392 -19275270 - L2 LINE L2 -8 3264 2878 2088 121 21 0 chr4 165013750 165014039 -19274623 - AluSg SINE Alu -15 295 1 1705 155 4 4 chr4 165015206 165015477 -19273185 - AluJo SINE Alu -3 309 39 310 89 0 0 chr4 165015494 165015539 -19273123 - L1PA16 LINE L1 -5 6161 6117 1563 138 55 14 chr4 165015543 165015832 -19272830 + MSTA LTR MaLR 128 428 0 2201 95 10 14 chr4 165015928 165016223 -19272439 + AluSp SINE Alu 3 296 -17 1506 141 34 0 chr4 165016309 165016572 -19272090 - L1PA16 LINE L1 -135 6031 5760 346 226 21 11 chr4 165016871 165016964 -19271698 + MLT1J1 LTR MaLR 1 94 -352 2290 99 0 3 chr4 165017340 165017644 -19271018 + AluSg SINE Alu 1 303 -7 2098 224 50 38 chr4 165017868 165018705 -19269957 - L1ME3A LINE L1 -232 5938 5092 2851 114 11 23 chr4 165019579 165020018 -19268644 + MER57B LTR ERV1 1 434 0 21 0 0 0 chr4 165020246 165020267 -19268395 + AT_rich Low_complexity Low_complexity 1 21 0 245 348 36 27 chr4 165022313 165022425 -19266237 - L2 LINE L2 -2 3270 3158 270 164 18 0 chr4 165022641 165022696 -19265966 + AluJo SINE Alu 82 137 -165 2035 95 16 25 chr4 165022701 165023016 -19265646 + L1MA2 LINE L1 5992 6303 -1 906 204 0 6 chr4 165023029 165023205 -19265457 + AluJo SINE Alu 123 297 -15 855 189 68 34 chr4 165023561 165023826 -19264836 - ORSL DNA AcHobo 0 275 2 199 286 16 0 chr4 165024691 165024754 -19263908 + MIR3 SINE MIR 120 183 -25 2313 101 0 13 chr4 165024901 165025209 -19263453 - AluSx SINE Alu -8 304 1 287 269 32 0 chr4 165025262 165025355 -19263307 + (TA)n Simple_repeat Simple_repeat 1 96 0 602 217 82 33 chr4 165026429 165026613 -19262049 + MIR SINE MIR 70 262 0 288 333 19 0 chr4 165026863 165026971 -19261691 + MIR3 SINE MIR 65 174 -34 324 0 0 0 chr4 165027440 165027476 -19261186 + (CA)n Simple_repeat Simple_repeat 1 36 0 408 287 99 58 chr4 165027950 165028204 -19260458 - L1ME4a LINE L1 -247 5874 5605 1601 162 60 14 chr4 165028204 165028488 -19260174 - AluJb SINE Alu -15 297 1 408 287 99 58 chr4 165028488 165028526 -19260136 - L1ME4a LINE L1 -516 5605 5570 504 0 0 0 chr4 165029929 165029985 -19258677 + (CA)n Simple_repeat Simple_repeat 2 57 0 264 122 0 0 chr4 165030388 165030429 -19258233 + (TA)n Simple_repeat Simple_repeat 2 42 0 2294 112 0 0 chr4 165031733 165032037 -19256625 + AluSx SINE Alu 2 305 -7 240 333 20 20 chr4 165032193 165032292 -19256370 + MIR SINE MIR 44 142 -66 1568 152 15 22 chr4 165033057 165033327 -19255335 + AluJo SINE Alu 15 282 -30 198 103 0 0 chr4 165033330 165033359 -19255303 + (CAAT)n Simple_repeat Simple_repeat 2 30 0 198 71 0 0 chr4 165033364 165033392 -19255270 + (TTG)n Simple_repeat Simple_repeat 2 29 0 297 0 0 0 chr4 165034992 165035025 -19253637 + (TG)n Simple_repeat Simple_repeat 2 34 0 242 114 0 0 chr4 165035026 165035061 -19253601 + (GA)n Simple_repeat Simple_repeat 2 36 0 1619 176 7 31 chr4 165035061 165035350 -19253312 - AluJo SINE Alu -30 282 1 1465 44 0 0 chr4 165035960 165036141 -19252521 - AluYb8 SINE Alu -2 316 136 2108 83 45 3 chr4 165036142 165036430 -19252232 - AluSq SINE Alu -13 300 1 2075 132 0 3 chr4 165036918 165037222 -19251440 - AluSx SINE Alu -9 303 1 376 123 0 46 chr4 165037406 165037471 -19251191 + Alu SINE Alu 241 302 0 2130 140 45 28 chr4 165037872 165038230 -19250432 + THE1B LTR MaLR 1 364 0 935 80 0 0 chr4 165038299 165038424 -19250238 - AluSg/x SINE Alu -5 307 183 4507 195 20 10 chr4 165088426 165089435 -19199227 + L1M2 LINE L1 2768 3789 -3059 477 223 76 76 chr4 165089437 165089621 -19199041 + FAM SINE Alu 1 49 0 9375 177 22 5 chr4 165090202 165092150 -19196512 - L1P4 LINE L1 -673 5492 3520 1048 170 0 0 chr4 165092281 165092452 -19196210 - L1 LINE L1 -2203 3943 3773 2186 82 38 3 chr4 165092457 165092750 -19195912 - L1PA7 LINE L1 -6 6148 5846 10483 71 15 1 chr4 165092752 165094520 -19194142 - L1PA7 LINE L1 -407 5747 3959 1969 146 10 3 chr4 165094707 165094995 -19193667 + AluSx SINE Alu 1 290 -22 1762 122 56 0 chr4 165096565 165096853 -19191809 - Tigger1 DNA MER2_type -358 2060 1757 415 238 0 0 chr4 165096850 165096934 -19191728 + Tigger1 DNA MER2_type 2335 2418 0 * 22 35 0 0 chr4 165097191 165097220 -19191442 + AT_rich Low_complexity Low_complexity 1 29 0 672 118 0 0 chr4 165097451 165097544 -19191118 + HY4 scRNA scRNA 1 93 0 488 219 29 51 chr4 165098417 165098435 -19190227 + Charlie8 DNA MER1_type 92 109 -221 724 117 117 25 chr4 165098435 165098555 -19190107 + FLAM_C SINE Alu 1 131 -2 488 219 29 51 chr4 165098555 165098673 -19189989 + Charlie8 DNA MER1_type 109 225 -105 235 245 38 0 chr4 165098752 165098805 -19189857 + Charlie8 DNA MER1_type 1373 1427 -990 524 269 84 0 chr4 165099465 165099632 -19189030 + L1ME3 LINE L1 5894 6074 -88 203 222 19 37 chr4 165100003 165100057 -19188605 - L2 LINE L2 -4 3268 3216 2540 164 28 2 chr4 165100672 165101340 -19187322 + L1M2 LINE L1 5009 5692 -605 320 244 13 0 chr4 165101350 165101428 -19187234 + L1PA15-16 LINE L1 1491 1569 -5280 * 1041 230 0 4 chr4 165101407 165101637 -19187025 + L1PA15-16 LINE L1 1335 1563 -5287 2039 139 0 0 chr4 165101803 165102118 -19186544 + AluSx SINE Alu 1 315 0 1640 166 50 33 chr4 165102340 165102459 -19186203 + AluJo SINE Alu 3 119 -193 198 24 24 49 chr4 165102459 165102500 -19186162 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 1640 166 50 33 chr4 165102500 165102682 -19185980 + AluJo SINE Alu 119 309 -3 5186 129 78 3 chr4 165103390 165103534 -19185128 - Tigger1 DNA MER2_type -192 2226 2094 3692 38 9 0 chr4 165103534 165103958 -19184704 - L1PA3 LINE L1 -3 6152 5725 5186 129 78 3 chr4 165103958 165104667 -19183995 - Tigger1 DNA MER2_type -324 2094 1309 1253 144 46 102 chr4 165104666 165104950 -19183712 - Tigger1 DNA MER2_type -2150 268 1 * 216 0 0 0 chr4 165105402 165105426 -19183236 + (T)n Simple_repeat Simple_repeat 1 24 0 2498 143 52 10 chr4 165105751 165106157 -19182505 - MSTB LTR MaLR 0 426 4 470 292 49 7 chr4 165106198 165106342 -19182320 - MIR3 SINE MIR -25 183 34 1537 144 8 21 chr4 165106390 165106633 -19182029 + AluJo SINE Alu 40 279 -33 22 0 0 0 chr4 165106647 165106669 -19181993 + AT_rich Low_complexity Low_complexity 1 22 0 189 107 0 0 chr4 165107234 165107262 -19181400 + (TTTTC)n Simple_repeat Simple_repeat 1 28 0 8833 200 66 15 chr4 165107541 165109751 -19178911 + L1M2c LINE L1 346 2663 -4126 3122 180 48 18 chr4 165109912 165110619 -19178043 + L1M2c LINE L1 3719 4446 -2342 * 17203 130 12 107 chr4 165110602 165114287 -19174375 + L1P LINE L1 13 3349 -2797 831 213 92 6 chr4 165114432 165114606 -19174056 + MER5A DNA MER1_type 1 189 0 569 241 133 10 chr4 165115162 165115365 -19173297 + HAL1 LINE L1 84 311 -2196 740 241 96 96 chr4 165115442 165115665 -19172997 + HAL1 LINE L1 467 692 -1815 2357 199 50 10 chr4 165115665 165116168 -19172494 + Charlie1b DNA MER1_type 1 523 0 740 241 96 96 chr4 165116168 165116288 -19172374 + HAL1 LINE L1 691 810 -1697 330 319 59 15 chr4 165116299 165116434 -19172228 - L1ME3A LINE L1 -20 6150 6010 325 145 58 0 chr4 165116470 165116539 -19172123 - L1MB3 LINE L1 0 6183 6111 519 254 46 17 chr4 165116555 165116728 -19171934 - L1MC5 LINE L1 -430 7531 7354 12841 180 82 12 chr4 165116732 165120401 -19168261 - L1PB1 LINE L1 0 6867 2510 2276 101 3 0 chr4 165120401 165120698 -19167964 - AluSc SINE Alu -11 298 1 12841 180 82 12 chr4 165120698 165122667 -19165995 - L1PB1 LINE L1 -4357 2510 680 1523 150 40 33 chr4 165122766 165123066 -19165596 - AluJo SINE Alu -10 302 1 441 219 88 50 chr4 165123066 165123643 -19165019 + HAL1 LINE L1 799 1589 -918 958 153 28 34 chr4 165123643 165123819 -19164843 - MSTD LTR MaLR 0 396 222 619 147 49 0 chr4 165123828 165123930 -19164732 - MSTD LTR MaLR -321 107 1 1556 252 80 10 chr4 165123931 165124442 -19164220 + HAL1 LINE L1 1586 2132 -375 202 358 24 6 chr4 165125203 165125368 -19163294 + L2 LINE L2 2265 2432 -882 2378 78 7 0 chr4 165125372 165125668 -19162994 - AluSg SINE Alu -11 299 2 1927 120 7 30 chr4 165126017 165126183 -19162479 - AluSx SINE Alu -20 292 124 347 0 23 0 chr4 165126183 165126226 -19162436 + (TTTTG)n Simple_repeat Simple_repeat 1 44 0 1861 58 4 21 chr4 165126226 165126467 -19162195 - AluY SINE Alu -31 280 44 1927 120 7 30 chr4 165126467 165126598 -19162064 - AluSx SINE Alu -186 126 1 2366 93 10 0 chr4 165126755 165127056 -19161606 + AluSx SINE Alu 1 304 -8 187 28 56 28 chr4 165127180 165127216 -19161446 + (CAAAAA)n Simple_repeat Simple_repeat 3 39 0 1556 133 156 15 chr4 165127217 165127480 -19161182 + AluJo SINE Alu 1 300 -2 183 42 0 0 chr4 165128215 165128239 -19160423 + (GGAA)n Simple_repeat Simple_repeat 4 27 0 2112 123 3 13 chr4 165129160 165129468 -19159194 + AluSx SINE Alu 1 305 -7 1738 154 32 4 chr4 165129676 165129955 -19158707 + AluJo SINE Alu 1 287 -25 2274 117 0 0 chr4 165129961 165130269 -19158393 + AluSc SINE Alu 1 308 -1 819 148 0 0 chr4 165130447 165130562 -19158100 + FLAM_C SINE Alu 6 120 -23 325 104 42 0 chr4 165130603 165130651 -19158011 - MER3 DNA MER1_type -5 204 155 798 216 0 12 chr4 165130653 165130820 -19157842 + FRAM SINE Alu 1 165 -1 709 206 0 22 chr4 165130898 165131034 -19157628 - MER3 DNA MER1_type -76 133 1 2380 79 3 7 chr4 165131137 165131442 -19157220 - AluSc SINE Alu -5 304 1 3430 138 108 9 chr4 165132557 165133114 -19155548 + LTR9 LTR ERV1 1 612 0 1180 246 186 12 chr4 165133257 165133745 -19154917 - L1MC4a LINE L1 -1853 5955 5383 41 36 0 0 chr4 165133749 165133804 -19154858 + AT_rich Low_complexity Low_complexity 1 55 0 4252 66 64 24 chr4 165134006 165134596 -19154066 - LTR10E LTR ERV1 0 633 20 234 98 122 0 chr4 165136747 165136788 -19151874 + AluSq SINE Alu 1 46 -256 6678 119 136 116 chr4 165136788 165138444 -19150218 + pTR5 LTR ERV1 750 2438 0 1914 77 46 11 chr4 165138447 165138707 -19149955 + AluSq SINE Alu 31 299 -14 388 296 20 20 chr4 165138848 165139000 -19149662 + L1MC/D LINE L1 5631 5782 -2026 559 121 50 0 chr4 165139027 165139126 -19149536 - L1MB3 LINE L1 0 6183 6080 2428 166 15 12 chr4 165139127 165139565 -19149097 + MER61C LTR ERV1 7 434 0 472 191 11 0 chr4 165139565 165139654 -19149008 - L1MB5 LINE L1 -91 6083 5994 1583 187 36 4 chr4 165139672 165139950 -19148712 - AluJb SINE Alu -25 287 1 472 270 20 14 chr4 165140051 165140199 -19148463 + MIR SINE MIR 2 150 -112 593 247 21 3 chr4 165140670 165140963 -19147699 + GA-rich Low_complexity Low_complexity 1 298 0 2301 87 0 32 chr4 165141051 165141360 -19147302 - AluSg SINE Alu -11 299 1 207 0 0 0 chr4 165143240 165143263 -19145399 + (T)n Simple_repeat Simple_repeat 1 23 0 986 136 0 74 chr4 165143953 165144129 -19144533 - AluJb SINE Alu -16 296 134 2126 127 0 0 chr4 165144336 165144628 -19144034 - AluSg SINE Alu -18 292 1 3493 199 54 50 chr4 165144779 165145626 -19143036 - L1MD2 LINE L1 -12 6347 5497 238 262 16 0 chr4 165145941 165146002 -19142660 - MLT1J LTR MaLR -219 292 231 766 141 18 12 chr4 165146723 165146886 -19141776 + CT-rich Low_complexity Low_complexity 1 164 0 1851 145 50 0 chr4 165146888 165147185 -19141477 - AluJo SINE Alu 0 312 1 1148 263 66 31 chr4 165147595 165147998 -19140664 - MLT1J LTR MaLR 0 490 91 995 148 51 131 chr4 165148100 165148336 -19140326 + MER20 DNA MER1_type 3 219 0 5063 252 41 60 chr4 165148963 165149986 -19138676 - L1PA12 LINE L1 -3627 3957 2916 2166 113 16 13 chr4 165149986 165150297 -19138365 - AluSx SINE Alu 0 312 1 5063 252 41 60 chr4 165150297 165150658 -19138004 - L1PA12 LINE L1 -4668 2916 2550 2167 145 0 0 chr4 165150658 165150961 -19137701 - AluSx SINE Alu -9 303 1 5063 252 41 60 chr4 165150961 165153098 -19135564 - L1PA12 LINE L1 -5034 2550 1 811 297 156 79 chr4 165153172 165154197 -19134465 - L2 LINE L2 -343 2971 1868 1640 113 35 8 chr4 165154205 165154462 -19134200 + L1PB1 LINE L1 1 264 -6599 906 132 9 18 chr4 165154465 165154639 -19134023 + LTR7 LTR ERV1 1 224 -226 791 145 7 33 chr4 165154901 165155053 -19133609 + LTR7 LTR ERV1 303 450 0 16043 122 50 8 chr4 165155053 165157557 -19131105 + L1PB1 LINE L1 313 2923 -3940 9161 167 25 20 chr4 165157551 165157787 -19130875 + L1PB1 LINE L1 4049 4282 -2585 * 2034 119 0 0 chr4 165157787 165158055 -19130607 + AluSq SINE Alu 1 268 -45 9161 167 25 20 chr4 165158055 165159831 -19128831 + L1PB1 LINE L1 4282 6093 -774 1931 122 10 58 chr4 165159831 165160143 -19128519 + AluSx SINE Alu 1 297 -15 9161 167 25 20 chr4 165160143 165160920 -19127742 + L1PB1 LINE L1 6093 6865 -2 1071 190 28 14 chr4 165161215 165161431 -19127231 - MLT1E2 LTR MaLR -404 222 4 2531 330 30 15 chr4 165161433 165162436 -19126226 + ERVL LTR ERVL 1758 2775 -2989 213 327 111 53 chr4 165162440 165162648 -19126014 + L2 LINE L2 1032 1251 -2063 * 244 361 78 0 chr4 165162636 165162802 -19125860 - L2 LINE L2 -1892 1422 1244 681 297 56 45 chr4 165162825 165163182 -19125480 - HAL1 LINE L1 -391 2116 1756 715 254 6 28 chr4 165163182 165163250 -19125412 + MLT1J LTR MaLR 2 70 -441 9075 67 17 2 chr4 165163250 165163737 -19124925 - L1PA6 LINE L1 -6 6148 5669 2249 89 10 0 chr4 165163737 165164029 -19124633 - AluY SINE Alu -16 295 1 9075 67 17 2 chr4 165164029 165164217 -19124445 - L1PA6 LINE L1 -485 5669 5485 2217 69 3 49 chr4 165164217 165164523 -19124139 - AluY SINE Alu -8 303 12 9075 67 17 2 chr4 165164523 165165790 -19122872 - L1PA6 LINE L1 -669 5485 4207 715 254 6 28 chr4 165165790 165165898 -19122764 + MLT1J LTR MaLR 70 174 -337 195 283 50 0 chr4 165165925 165165985 -19122677 + L2 LINE L2 3251 3313 0 181 321 0 0 chr4 165166054 165166107 -19122555 + L2 LINE L2 3007 3059 -213 2048 126 20 0 chr4 165167001 165167295 -19121367 + AluSq SINE Alu 1 300 -13 203 308 125 8 chr4 165167643 165167763 -19120899 + MIR SINE MIR 13 146 -116 556 322 107 60 chr4 165167800 165168405 -19120257 + L2 LINE L2 1957 2590 -724 686 98 18 0 chr4 165168808 165168920 -19119742 + (TCTCC)n Simple_repeat Simple_repeat 1 114 0 2151 107 7 0 chr4 165168920 165169210 -19119452 - AluSq SINE Alu -21 292 1 252 125 0 0 chr4 165170213 165170253 -19118409 + L1M4 LINE L1 4511 4550 -1596 4026 212 52 23 chr4 165170669 165170955 -19117707 + L1ME1 LINE L1 4341 4617 -1549 2362 102 3 0 chr4 165170955 165171260 -19117402 + AluSg SINE Alu 1 306 -4 4026 212 52 23 chr4 165171260 165172487 -19116175 + L1ME1 LINE L1 4617 5907 -259 2556 82 54 35 chr4 165172487 165172538 -19116124 - THE1C LTR MaLR 0 375 326 1811 98 4 0 chr4 165172538 165172772 -19115890 - AluSg SINE Alu -14 296 62 2556 82 54 35 chr4 165172772 165173088 -19115574 - THE1C LTR MaLR -49 326 1 4026 212 52 23 chr4 165173088 165173321 -19115341 + L1ME1 LINE L1 5907 6132 -34 578 279 128 9 chr4 165173963 165174182 -19114480 + MIR SINE MIR 12 256 -6 1860 158 36 10 chr4 165174190 165174494 -19114168 - AluJb SINE Alu 0 312 1 316 120 0 0 chr4 165175352 165175402 -19113260 + MADE1 DNA Mariner 31 80 0 396 213 142 43 chr4 165175463 165175674 -19112988 - HAL1 LINE L1 -102 2405 2174 1504 187 63 58 chr4 165176436 165176632 -19112030 - MLT1B LTR MaLR -8 382 182 552 15 0 0 chr4 165176632 165176697 -19111965 + (GA)n Simple_repeat Simple_repeat 2 66 0 1504 187 63 58 chr4 165176697 165176880 -19111782 - MLT1B LTR MaLR -208 182 1 233 398 11 0 chr4 165177931 165178019 -19110643 + L2 LINE L2 3118 3206 -66 223 191 21 0 chr4 165178066 165178113 -19110549 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 887 152 0 21 chr4 165178212 165178357 -19110305 - FLAM_C SINE Alu 0 143 2 253 282 142 26 chr4 165178567 165178854 -19109808 - L2 LINE L2 -167 3105 2431 375 146 10 87 chr4 165179472 165179575 -19109087 - L1MB8 LINE L1 0 6178 6084 1662 155 7 66 chr4 165180449 165180753 -19107909 - AluJo SINE Alu -26 286 1 319 221 244 0 chr4 165182132 165182218 -19106444 - MER81 DNA DNA -4 110 4 195 42 0 0 chr4 165182549 165182573 -19106089 + (T)n Simple_repeat Simple_repeat 1 24 0 279 228 76 33 chr4 165183581 165183673 -19104989 - L1MB8 LINE L1 -2129 5679 5584 890 184 41 0 chr4 165184246 165184393 -19104269 - AluJb SINE Alu -23 289 137 23 54 0 0 chr4 165185067 165185104 -19103558 + AT_rich Low_complexity Low_complexity 1 37 0 685 151 62 18 chr4 165185110 165185257 -19103405 + L1MC2 LINE L1 5997 6132 -212 1316 128 33 33 chr4 165185294 165185537 -19103125 + L1MC2 LINE L1 6102 6344 0 2123 125 3 13 chr4 165186790 165187101 -19101561 + AluSx SINE Alu 1 308 -4 1167 126 11 0 chr4 165187101 165187275 -19101387 + AluSg/x SINE Alu 132 307 -3 180 294 38 120 chr4 165187280 165187367 -19101295 - MIR3 SINE MIR -31 177 111 3563 119 16 4 chr4 165187367 165187872 -19100790 + MER9 LTR ERVK 1 511 0 180 294 38 120 chr4 165187872 165187968 -19100694 - MIR3 SINE MIR -97 111 9 2286 102 3 3 chr4 165188336 165188640 -19100022 + AluSx SINE Alu 1 304 -8 464 200 45 65 chr4 165189044 165189199 -19099463 - L1ME4a LINE L1 -1 6120 5969 250 221 24 63 chr4 165189316 165189337 -19099325 - L1MA4A LINE L1 0 6303 6283 1051 211 73 27 chr4 165189337 165189598 -19099064 - L1PB4 LINE L1 -4 6152 5880 464 186 29 0 chr4 165189573 165189675 -19098987 - L1ME4a LINE L1 -1986 5822 5718 * 2359 94 0 3 chr4 165190769 165191076 -19097586 - AluSq SINE Alu -7 306 1 1634 161 61 0 chr4 165191410 165191671 -19096991 + AluJb SINE Alu 15 291 -21 29 70 0 0 chr4 165191671 165191728 -19096934 + AT_rich Low_complexity Low_complexity 1 57 0 415 204 19 0 chr4 165192182 165192290 -19096372 - L1MB8 LINE L1 -2 6176 6067 22 0 0 0 chr4 165193329 165193351 -19095311 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 165195035 165195056 -19093606 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 165195142 165195167 -19093495 + AT_rich Low_complexity Low_complexity 1 25 0 1642 181 14 7 chr4 165195167 165195455 -19093207 - AluJo SINE Alu -22 290 1 1206 144 62 0 chr4 165195784 165195978 -19092684 + MER2 DNA MER2_type 1 206 -139 4178 125 23 45 chr4 165196037 165196763 -19091899 - L1PA15 LINE L1 0 6165 5456 226 306 0 0 chr4 165196886 165196958 -19091704 + (TG)n Simple_repeat Simple_repeat 2 73 0 2194 100 21 0 chr4 165196975 165197294 -19091368 + AluSp SINE Alu 1 313 0 632 257 96 48 chr4 165197310 165197559 -19091103 - MIR SINE MIR -1 261 1 1764 169 0 20 chr4 165198804 165199106 -19089556 + AluJo SINE Alu 1 296 -16 510 283 65 11 chr4 165199212 165199396 -19089266 + MIR SINE MIR 30 223 -39 2156 128 3 3 chr4 165199621 165199933 -19088729 + AluSx SINE Alu 1 312 0 1817 167 0 26 chr4 165200370 165200701 -19087961 - AluJo SINE Alu 0 312 1 388 150 100 0 chr4 165200734 165200814 -19087848 - ORSL DNA AcHobo -111 164 77 1238 121 19 29 chr4 165200822 165201028 -19087634 - L1PA16 LINE L1 0 6166 5963 2152 102 0 7 chr4 165201213 165201531 -19087131 + AluSx SINE Alu 1 316 0 22 0 0 0 chr4 165201555 165201577 -19087085 + AT_rich Low_complexity Low_complexity 1 22 0 302 304 27 36 chr4 165201802 165201914 -19086748 - L2 LINE L2 -195 3077 2967 195 390 14 20 chr4 165201999 165202145 -19086517 - L2 LINE L2 -429 2885 2741 206 31 0 31 chr4 165202146 165202178 -19086484 + (TTG)n Simple_repeat Simple_repeat 2 32 0 420 88 0 0 chr4 165202182 165202239 -19086423 - Alu SINE Alu -16 296 240 316 260 8 39 chr4 165202478 165202605 -19086057 + LTR67 LTR ERVL 428 550 -7 345 253 107 13 chr4 165202607 165202757 -19085905 - MIR SINE MIR -34 228 65 2287 92 3 0 chr4 165203090 165203382 -19085280 - AluSc SINE Alu -16 293 1 255 253 24 0 chr4 165204472 165204555 -19084107 - AluS SINE Alu -218 85 1 1265 87 0 4 chr4 165204582 165204801 -19083861 + AluSx SINE Alu 2 301 -9 1828 163 7 0 chr4 165205183 165205477 -19083185 - AluJo SINE Alu -16 296 1 268 143 121 66 chr4 165206144 165206235 -19082427 - MLT1K LTR MaLR -2 586 491 824 292 89 35 chr4 165207420 165208176 -19080486 + L2 LINE L2 2496 3294 -19 2442 88 3 0 chr4 165208209 165208514 -19080148 + AluSp SINE Alu 1 306 -7 23 68 0 0 chr4 165208548 165208592 -19080070 + AT_rich Low_complexity Low_complexity 1 44 0 1837 168 3 26 chr4 165208602 165208912 -19079750 + AluJo SINE Alu 1 303 -9 676 219 82 4 chr4 165209121 165209285 -19079377 - MLT1G1 LTR MaLR 0 595 354 335 261 18 45 chr4 165209406 165209517 -19079145 - MLT1F1 LTR MaLR -447 120 13 1767 155 26 42 chr4 165209599 165209909 -19078753 + AluJo SINE Alu 3 307 -5 618 167 87 16 chr4 165209923 165210049 -19078613 + FLAM_C SINE Alu 9 143 0 1419 210 80 43 chr4 165210266 165210839 -19077823 - MER76 LTR ERV 0 688 24 2326 88 3 3 chr4 165210858 165211164 -19077498 - AluSx SINE Alu -6 306 1 2370 119 0 0 chr4 165211751 165212063 -19076599 + AluSx SINE Alu 1 312 0 2341 82 26 0 chr4 165213559 165213863 -19074799 - AluSx SINE Alu 0 312 1 417 41 0 0 chr4 165214191 165214240 -19074422 + AluSc SINE Alu 214 262 -47 * 507 163 38 0 chr4 165214238 165214318 -19074344 + FLAM_C SINE Alu 35 117 -26 182 36 0 36 chr4 165214318 165214346 -19074316 + (TAAAA)n Simple_repeat Simple_repeat 1 27 0 255 294 322 0 chr4 165214724 165214901 -19073761 - L2 LINE L2 -479 2835 2602 242 183 233 0 chr4 165215226 165215286 -19073376 + L2 LINE L2 3231 3304 -9 435 248 80 0 chr4 165216043 165216156 -19072506 - L2 LINE L2 -4 3309 3188 225 310 86 23 chr4 165216643 165216817 -19071845 - MER5A DNA MER1_type 0 189 5 1401 274 80 28 chr4 165217274 165217986 -19070676 + L2 LINE L2 2333 3006 -307 2263 117 3 3 chr4 165217986 165218293 -19070369 - AluSg SINE Alu -3 307 1 2478 84 0 0 chr4 165218293 165218590 -19070072 - AluSx SINE Alu -14 298 1 1401 274 80 28 chr4 165218590 165218759 -19069903 + L2 LINE L2 3005 3313 0 397 299 100 26 chr4 165218778 165219009 -19069653 + L2 LINE L2 3065 3312 -1 1747 151 24 31 chr4 165219032 165219323 -19069339 + AluJo SINE Alu 2 290 -22 182 357 8 40 chr4 165219329 165219455 -19069207 - MIR SINE MIR -122 140 19 2386 95 0 3 chr4 165219490 165219794 -19068868 + AluSx SINE Alu 1 303 -9 1778 128 4 4 chr4 165219994 165220251 -19068411 - AluSx SINE Alu -12 300 44 307 292 39 23 chr4 165220302 165220432 -19068230 + L2 LINE L2 3170 3301 -12 454 391 22 6 chr4 165220784 165221104 -19067558 - L2 LINE L2 -730 2584 2260 869 145 0 47 chr4 165221319 165221491 -19067171 - FRAM SINE Alu 0 166 3 1769 179 0 20 chr4 165221821 165222123 -19066539 + AluJb SINE Alu 1 296 -16 2335 98 0 3 chr4 165222125 165222430 -19066232 + AluSc SINE Alu 1 304 -5 2353 100 3 0 chr4 165223070 165223371 -19065291 - AluSp SINE Alu -11 302 1 2244 102 10 3 chr4 165223376 165223679 -19064983 - AluSx SINE Alu -6 306 2 1589 133 30 0 chr4 165225101 165225334 -19063328 + AluSx SINE Alu 3 242 -70 1958 115 0 7 chr4 165225381 165225676 -19062986 - L1MA2 LINE L1 -1 6303 6011 1979 101 63 0 chr4 165226054 165226322 -19062340 + AluSx SINE Alu 2 286 -26 2530 79 0 0 chr4 165226474 165226779 -19061883 + AluSp SINE Alu 1 305 -8 1707 151 70 4 chr4 165227688 165227996 -19060666 - AluJo SINE Alu 0 326 1 1988 238 87 17 chr4 165228426 165228943 -19059719 + MER69 DNA AcHobo 17 569 -1957 719 223 77 59 chr4 165228940 165229027 -19059635 + MER69 DNA AcHobo 2011 2095 -431 * 2180 123 3 3 chr4 165229027 165229335 -19059327 + AluSx SINE Alu 1 308 -4 719 223 77 59 chr4 165229335 165229534 -19059128 + MER69 DNA AcHobo 2095 2302 -224 1255 96 12 0 chr4 165229537 165229704 -19058958 + AluSg/x SINE Alu 137 305 -7 726 208 135 5 chr4 165229704 165229911 -19058751 + MER69 DNA AcHobo 2293 2526 0 2170 107 10 10 chr4 165230009 165230307 -19058355 + AluSq SINE Alu 1 298 -15 1887 159 0 13 chr4 165230315 165230624 -19058038 + AluJo SINE Alu 2 306 -6 2030 121 4 0 chr4 165230854 165231118 -19057544 - AluSg SINE Alu -45 265 1 25 31 0 0 chr4 165231185 165231217 -19057445 + AT_rich Low_complexity Low_complexity 1 32 0 927 48 87 0 chr4 165231432 165231558 -19057104 + MER85 DNA T2_type 1 137 -2 1387 70 43 0 chr4 165231634 165231820 -19056842 - MER30 DNA MER1_type -33 197 4 730 184 24 0 chr4 165231891 165232016 -19056646 + FLAM_A SINE Alu 2 129 -4 1168 64 0 7 chr4 165232022 165232163 -19056499 + AluY SINE Alu 1 140 -171 2428 68 0 10 chr4 165232163 165232457 -19056205 + AluY SINE Alu 1 291 -20 2300 98 0 7 chr4 165233379 165233675 -19054987 + AluSc SINE Alu 1 294 -15 2264 113 0 0 chr4 165233919 165234211 -19054451 + AluSx SINE Alu 1 292 -20 1940 202 18 0 chr4 165235169 165235565 -19053097 + MER57A LTR ERV1 1 403 0 817 174 65 0 chr4 165235568 165235706 -19052956 - AluJb SINE Alu -30 282 136 1156 329 102 49 chr4 165235794 165236748 -19051914 - L3 LINE CR1 -76 1501 498 859 296 42 87 chr4 165236759 165237336 -19051326 + LTR67 LTR ERVL 6 556 -1 583 372 55 13 chr4 165237342 165237740 -19050922 - L3 LINE CR1 -1085 492 78 444 138 0 0 chr4 165238019 165238084 -19050578 - MLT1A1 LTR MaLR 0 365 301 1734 111 0 0 chr4 165238087 165238313 -19050349 + AluSq SINE Alu 1 226 -87 934 114 0 8 chr4 165238313 165238445 -19050217 + AluSg/x SINE Alu 163 293 -17 1229 197 57 30 chr4 165238448 165238712 -19049950 - MLT1A1 LTR MaLR -60 305 35 270 116 0 0 chr4 165238753 165238796 -19049866 + (A)n Simple_repeat Simple_repeat 1 43 0 340 143 0 0 chr4 165238798 165238847 -19049815 - MLT1A1 LTR MaLR -315 50 2 1066 193 9 64 chr4 165239104 165239252 -19049410 + AluJo SINE Alu 1 135 -177 2305 81 7 0 chr4 165239252 165239535 -19049127 + AluSp SINE Alu 1 285 -28 307 56 0 0 chr4 165239337 165239558 -19049104 + AluSp SINE Alu 86 306 0 236 135 0 0 chr4 165239617 165239654 -19049008 - AluSx SINE Alu -9 292 256 1966 113 4 0 chr4 165239688 165239945 -19048717 - AluSx SINE Alu -54 258 1 2052 140 0 0 chr4 165240365 165240651 -19048011 - AluJb SINE Alu -26 286 1 917 108 8 0 chr4 165241744 165241874 -19046788 + FLAM_C SINE Alu 1 131 -2 2470 59 0 0 chr4 165242566 165242856 -19045806 + AluY SINE Alu 16 305 -6 2296 109 3 0 chr4 165242893 165243204 -19045458 + AluSx SINE Alu 1 312 0 2075 119 28 0 chr4 165243280 165243565 -19045097 - AluSg SINE Alu -17 293 1 2255 97 13 6 chr4 165243566 165243877 -19044785 - AluSp SINE Alu 0 313 1 826 106 8 8 chr4 165243961 165244084 -19044578 + FLAM_C SINE Alu 1 123 -20 494 151 0 0 chr4 165245278 165245351 -19043311 + LTR10E LTR ERV1 540 612 -21 2346 104 0 10 chr4 165245401 165245709 -19042953 - AluSq SINE Alu -8 305 1 394 324 27 0 chr4 165245710 165245821 -19042841 - MLT1J LTR MaLR -290 221 108 1950 126 7 17 chr4 165245823 165246124 -19042538 - AluSx SINE Alu -10 302 5 2656 49 0 0 chr4 165246214 165246520 -19042142 - AluY SINE Alu -5 306 1 196 315 14 27 chr4 165247927 165248000 -19040662 - MIR SINE MIR -107 101 30 22 0 0 0 chr4 165248810 165248832 -19039830 + AT_rich Low_complexity Low_complexity 1 22 0 2606 201 30 17 chr4 165251905 165252438 -19036224 + MLT1F LTR MaLR 1 540 -2 240 199 48 97 chr4 165253002 165253095 -19035567 + MIR3 SINE MIR 79 167 -41 1653 194 21 0 chr4 165253338 165253622 -19035040 - AluJb SINE Alu -22 290 1 209 283 65 11 chr4 165254479 165254571 -19034091 + L2 LINE L2 2512 2608 -706 1825 128 0 4 chr4 165254582 165254832 -19033830 - AluSg SINE Alu -20 290 42 1829 146 65 14 chr4 165255509 165255865 -19032797 + L1MB3 LINE L1 5810 6183 0 204 158 0 0 chr4 165255897 165255935 -19032727 + A-rich Low_complexity Low_complexity 1 38 0 2172 99 0 53 chr4 165257146 165257468 -19031194 - AluSg1 SINE Alu -3 306 2 2115 117 10 10 chr4 165258853 165259153 -19029509 + AluSx SINE Alu 1 300 -12 1796 143 29 0 chr4 165259856 165260129 -19028533 + AluJo SINE Alu 12 292 -20 1418 95 16 0 chr4 165310159 165310349 -18978313 + AluSq SINE Alu 106 298 -15 385 284 134 3 chr4 165311375 165311667 -18976995 + L1MEc LINE L1 1362 1691 -4705 300 275 141 7 chr4 165311911 165312053 -18976609 + MIR SINE MIR 84 244 -18 583 194 0 79 chr4 165313024 165313200 -18975462 + FRAM SINE Alu 1 40 0 519 285 0 22 chr4 165314540 165314677 -18973985 - L2 LINE L2 -1 3271 3138 626 70 100 0 chr4 165315658 165315758 -18972904 + L1PA12 LINE L1 6059 6168 0 2267 75 3 31 chr4 165316126 165316444 -18972218 + AluY SINE Alu 3 311 0 1582 181 44 4 chr4 165316614 165316885 -18971777 - AluJo SINE Alu -28 284 3 459 0 0 0 chr4 165316916 165316967 -18971695 + (TG)n Simple_repeat Simple_repeat 2 52 0 413 139 91 133 chr4 165317178 165317343 -18971319 + MLT1J LTR MaLR 6 163 -304 276 191 0 0 chr4 165318496 165318543 -18970119 - AluSq/x SINE Alu -187 115 69 3601 116 62 26 chr4 165318624 165319236 -18969426 + MER51A LTR ERV1 1 634 0 443 309 39 27 chr4 165320108 165320364 -18968298 + MLT1J LTR MaLR 237 495 -16 1384 116 0 15 chr4 165320364 165320562 -18968100 + AluSg/x SINE Alu 106 300 -12 2292 107 10 0 chr4 165320564 165320872 -18967790 + AluSx SINE Alu 1 311 -1 341 325 68 8 chr4 165321848 165321965 -18966697 - L2 LINE L2 0 3313 3190 648 179 8 0 chr4 165322122 165322239 -18966423 + AluJb SINE Alu 1 118 -194 189 0 0 0 chr4 165322243 165322264 -18966398 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 182 219 0 0 chr4 165322342 165322374 -18966288 + L2 LINE L2 3190 3221 -92 189 211 115 19 chr4 165322697 165322749 -18965913 + L2 LINE L2 3243 3299 -14 219 36 0 0 chr4 165322752 165322780 -18965882 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 273 393 95 32 chr4 165324816 165325101 -18963561 - L3 LINE CR1 -1204 373 71 1673 170 38 0 chr4 165326043 165326308 -18962354 - AluJo SINE Alu -35 277 3 270 310 81 23 chr4 165326312 165326399 -18962263 - L2 LINE L2 -25 3288 3197 1007 206 0 101 chr4 165326430 165326756 -18961906 - L1ME3 LINE L1 -260 5902 5610 547 302 34 0 chr4 165326826 165326975 -18961687 + MIR3 SINE MIR 32 185 -23 1184 73 136 91 chr4 165327951 165328171 -18960491 - MER30 DNA MER1_type 0 230 1 294 217 0 17 chr4 165328477 165328537 -18960125 - L1ME3 LINE L1 -2144 5664 5606 1918 138 0 23 chr4 165328708 165328874 -18959788 - AluSx SINE Alu -14 298 141 2308 96 0 19 chr4 165328874 165329186 -18959476 - AluY SINE Alu -5 306 1 1918 138 0 23 chr4 165329186 165329324 -18959338 - AluSx SINE Alu -171 141 1 205 171 0 0 chr4 165329364 165329399 -18959263 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 1065 224 21 3 chr4 165330219 165330509 -18958153 - MER33 DNA MER1_type 0 324 30 272 319 16 66 chr4 165331070 165331252 -18957410 + MIR SINE MIR 46 218 -44 425 205 62 36 chr4 165331273 165331385 -18957277 + MIR3 SINE MIR 58 172 -36 210 305 85 12 chr4 165331525 165331607 -18957055 - L2 LINE L2 -5 3267 3180 2683 170 54 6 chr4 165332100 165332636 -18956026 + L1PB4 LINE L1 5589 6150 -6 206 101 76 13 chr4 165332636 165332715 -18955947 + (TA)n Simple_repeat Simple_repeat 1 84 0 754 56 0 0 chr4 165332718 165332808 -18955854 - AluSg SINE Alu -212 98 9 23 0 0 0 chr4 165332821 165332844 -18955818 + AT_rich Low_complexity Low_complexity 1 23 0 398 156 33 61 chr4 165332844 165333024 -18955638 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 259 223 40 17 chr4 165332976 165333151 -18955511 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 * 221 96 104 0 chr4 165333175 165333300 -18955362 + (TA)n Simple_repeat Simple_repeat 1 138 0 2290 89 7 0 chr4 165333301 165333594 -18955068 - AluSg SINE Alu -15 295 1 22 0 0 0 chr4 165333594 165333616 -18955046 + AT_rich Low_complexity Low_complexity 1 22 0 231 339 84 29 chr4 165333739 165333978 -18954684 - L2 LINE L2 -1490 1824 1573 33 0 0 0 chr4 165335005 165335038 -18953624 + AT_rich Low_complexity Low_complexity 1 33 0 258 155 56 0 chr4 165337234 165337305 -18951357 + L1MA10 LINE L1 6258 6332 -2 1413 124 59 15 chr4 165337426 165337699 -18950963 - L1MA8 LINE L1 -3 6288 6004 497 202 11 0 chr4 165337779 165337873 -18950789 - MER2 DNA MER2_type -250 95 1 285 161 81 16 chr4 165338198 165338260 -18950402 - L2 LINE L2 -2 3311 3246 406 274 0 1 chr4 165338481 165338582 -18950080 - MIR SINE MIR -97 111 10 210 348 43 0 chr4 165338612 165338704 -18949958 - L2 LINE L2 -229 3084 2989 2314 98 3 0 chr4 165339524 165339819 -18948843 + AluSq SINE Alu 1 296 -17 327 326 5 88 chr4 165341585 165341778 -18946884 + L2 LINE L2 2881 3057 -215 266 268 37 12 chr4 165342089 165342171 -18946491 - L2 LINE L2 0 3313 3230 221 278 19 0 chr4 165344335 165344389 -18944273 - L2 LINE L2 -65 3207 3153 220 284 11 84 chr4 165344770 165344800 -18943862 - L2 LINE L2 0 3272 3241 2097 144 10 0 chr4 165344800 165345105 -18943557 - AluSx SINE Alu -2 310 3 220 284 11 84 chr4 165345105 165345169 -18943493 - L2 LINE L2 -31 3241 3185 418 293 59 80 chr4 165345283 165345704 -18942958 - L2 LINE L2 -212 3060 2637 261 57 0 0 chr4 165346444 165346479 -18942183 + (GA)n Simple_repeat Simple_repeat 2 36 0 484 233 291 21 chr4 165346535 165346724 -18941938 + MIR SINE MIR 2 241 -21 180 111 0 0 chr4 165346736 165346763 -18941899 + (CAT)n Simple_repeat Simple_repeat 1 27 0 1614 146 89 7 chr4 165348966 165349246 -18939416 + AluSx SINE Alu 1 303 -9 387 318 24 86 chr4 165351060 165351315 -18937347 + L2 LINE L2 2991 3229 -43 421 194 0 33 chr4 165352468 165352703 -18935959 + AluSx SINE Alu 1 293 -19 873 232 113 30 chr4 165352864 165353299 -18935363 + L1ME2 LINE L1 4825 5295 -851 1139 252 118 5 chr4 165354229 165354634 -18934028 + L1ME2 LINE L1 5318 5768 -396 793 270 24 8 chr4 165354691 165354939 -18933723 + L1ME2 LINE L1 5904 6155 -9 1466 193 0 11 chr4 165354962 165355231 -18933431 + AluJo SINE Alu 40 305 -7 628 265 203 13 chr4 165355465 165355839 -18932823 + L3b LINE CR1 1102 1546 -37 2224 135 0 0 chr4 165356383 165356695 -18931967 + AluSx SINE Alu 1 312 0 22 35 0 0 chr4 165356761 165356790 -18931872 + AT_rich Low_complexity Low_complexity 1 29 0 902 154 0 0 chr4 165356796 165356932 -18931730 - AluJ SINE Alu -12 300 165 181 314 71 0 chr4 165357641 165357711 -18930951 + L2 LINE L2 3148 3222 -50 417 318 57 57 chr4 165357895 165358065 -18930597 + HAL1 LINE L1 1153 1325 -1182 1712 182 94 19 chr4 165358065 165358438 -18930224 + MER57A LTR ERV1 3 403 0 417 318 57 57 chr4 165358438 165358563 -18930099 + HAL1 LINE L1 1324 1448 -1059 237 349 57 6 chr4 165358593 165358768 -18929894 + HAL1 LINE L1 1502 1685 -822 246 174 37 64 chr4 165359054 165359163 -18929499 + HAL1b LINE L1 743 848 -500 2693 140 15 9 chr4 165359236 165359694 -18928968 + HERVL-A2 LTR ERVL 5194 5654 0 492 151 156 91 chr4 165359697 165359883 -18928779 + MLT2A2 LTR ERVL 5 202 -251 1778 163 7 3 chr4 165361143 165361431 -18927231 - AluJo SINE Alu -23 289 1 540 163 189 20 chr4 165361438 165361591 -18927071 - MER5A DNA MER1_type -2 187 9 218 262 238 0 chr4 165361614 165361740 -18926922 + L2 LINE L2 2066 2221 -1093 594 204 58 87 chr4 165361747 165361919 -18926743 + MER5B DNA MER1_type 7 173 -5 * 1228 257 154 39 chr4 165361887 165362747 -18925915 + L2 LINE L2 2177 3138 -175 924 158 63 129 chr4 165362899 165363291 -18925371 + MLT1A2 LTR MaLR 20 374 0 341 297 51 76 chr4 165363323 165363559 -18925103 + L3 LINE CR1 580 809 -768 2059 134 7 3 chr4 165363609 165363908 -18924754 - AluSx SINE Alu -12 300 1 659 208 62 90 chr4 165363951 165363995 -18924667 - AluJ SINE Alu -139 173 129 216 0 0 0 chr4 165363995 165364019 -18924643 + (TTG)n Simple_repeat Simple_repeat 3 26 0 659 208 62 90 chr4 165364019 165364152 -18924510 - AluJ SINE Alu -183 129 1 184 213 33 0 chr4 165364904 165364965 -18923697 + (TA)n Simple_repeat Simple_repeat 1 63 0 1919 151 47 0 chr4 165365041 165365339 -18923323 + AluSx SINE Alu 1 312 0 347 333 142 7 chr4 165365452 165365593 -18923069 - MIR3 SINE MIR -4 204 45 1756 207 78 35 chr4 165366061 165366545 -18922117 + MLT1D LTR MaLR 1 505 0 22 0 0 0 chr4 165367776 165367798 -18920864 + AT_rich Low_complexity Low_complexity 1 22 0 2374 84 0 3 chr4 165368325 165368623 -18920039 - AluSc SINE Alu -7 302 6 638 219 77 86 chr4 165368910 165369143 -18919519 + L2 LINE L2 3083 3313 0 314 148 0 0 chr4 165369881 165369942 -18918720 + MLT1D LTR MaLR 445 505 0 254 375 18 9 chr4 165371365 165371477 -18917185 + MIR SINE MIR 20 132 -130 9098 194 80 7 chr4 165371571 165374039 -18914623 + L1 LINE L1 2769 5425 -726 3006 86 13 2 chr4 165374038 165374492 -18914170 + L1PB1 LINE L1 5333 5791 -360 * 320 84 8 76 chr4 165374509 165374628 -18914034 + (TA)n Simple_repeat Simple_repeat 2 112 0 2484 113 3 8 chr4 165374628 165375000 -18913662 + L1PB1 LINE L1 5776 6145 -6 1417 241 78 49 chr4 165375905 165376556 -18912106 - L1ME3A LINE L1 -1 6238 5569 860 297 36 37 chr4 165376831 165377562 -18911100 - L1ME3A LINE L1 -4655 1741 1012 1568 138 130 11 chr4 165377623 165377892 -18910770 - AluSx SINE Alu 0 302 2 1042 188 19 10 chr4 165378017 165378224 -18910438 - MER6B DNA MER2_type 0 210 2 237 311 29 0 chr4 165378452 165378555 -18910107 - L1ME3A LINE L1 -5953 252 147 1404 147 19 0 chr4 165378796 165379007 -18909655 - AluSg/x SINE Alu -24 286 72 1916 101 0 4 chr4 165379107 165379355 -18909307 - AluSx SINE Alu -65 247 1 6503 131 59 11 chr4 165379535 165380067 -18908595 + Tigger3b DNA MER2_type 1 506 -2522 2317 82 0 13 chr4 165380067 165380371 -18908291 - AluSc SINE Alu -9 300 1 6503 131 59 11 chr4 165380371 165380419 -18908243 + Tigger3b DNA MER2_type 506 550 -2478 1662 175 21 12 chr4 165380419 165380756 -18907906 + L1PB4 LINE L1 5817 6156 0 6503 131 59 11 chr4 165380756 165381012 -18907650 + Tigger3b DNA MER2_type 550 792 -2236 203 61 30 0 chr4 165381012 165381045 -18907617 + (CTCA)n Simple_repeat Simple_repeat 1 34 0 6503 131 59 11 chr4 165381045 165381381 -18907281 + Tigger3b DNA MER2_type 792 1231 0 2504 65 0 3 chr4 165382008 165382318 -18906344 - AluY SINE Alu 0 311 3 1935 136 10 36 chr4 165382459 165382767 -18905895 + AluJo SINE Alu 1 300 -12 416 287 118 62 chr4 165382779 165382927 -18905735 - L1MC4a LINE L1 -1898 5910 5772 1354 148 63 79 chr4 165382927 165383244 -18905418 - AluJb SINE Alu 0 312 1 416 287 118 62 chr4 165383244 165383544 -18905118 - L1MC4a LINE L1 -2036 5772 5437 375 157 0 0 chr4 165383573 165383643 -18905019 + (TG)n Simple_repeat Simple_repeat 1 70 0 2172 109 3 0 chr4 165383643 165383949 -18904713 - AluSq SINE Alu 0 307 1 1784 138 33 0 chr4 165383959 165384234 -18904428 - AluSx SINE Alu -28 284 1 1817 118 10 34 chr4 165384328 165384625 -18904037 - AluJb SINE Alu -18 294 5 270 154 0 0 chr4 165384778 165384830 -18903832 - L1MC4 LINE L1 -5 8037 7986 799 216 197 49 chr4 165384832 165385006 -18903656 - L1MC4 LINE L1 -140 7902 7755 3164 104 48 69 chr4 165385006 165385544 -18903118 - MER1A DNA MER1_type 0 527 1 799 216 197 49 chr4 165385544 165386044 -18902618 - L1MC4 LINE L1 -287 7755 6980 2131 93 99 9 chr4 165386412 165386756 -18901906 - THE1C LTR MaLR 0 375 1 313 241 139 15 chr4 165386960 165387097 -18901565 - L1MEd LINE L1 -2937 3192 3039 704 101 9 28 chr4 165387098 165387207 -18901455 - AluSx SINE Alu -6 306 200 1056 140 0 0 chr4 165387207 165387357 -18901305 - AluSx SINE Alu -162 150 1 532 328 71 56 chr4 165387361 165387521 -18901141 - L1MEd LINE L1 -3106 3023 2867 2012 134 0 50 chr4 165387521 165387841 -18900821 - AluSx SINE Alu -8 304 1 532 328 71 56 chr4 165387841 165388288 -18900374 - L1MEd LINE L1 -3262 2867 2377 2187 83 28 7 chr4 165388361 165388649 -18900013 - AluSx SINE Alu -17 295 2 2125 117 0 0 chr4 165388714 165389019 -18899643 - AluSx SINE Alu 0 305 1 649 342 58 42 chr4 165389086 165389645 -18899017 - L1MEd LINE L1 -957 1533 868 852 122 0 82 chr4 165389930 165390077 -18898585 - FLAM_C SINE Alu -8 135 1 245 155 0 17 chr4 165390184 165390242 -18898420 + MER53 DNA DNA 97 153 -36 1316 158 5 9 chr4 165390242 165390463 -18898199 - AluJo SINE Alu -9 303 84 2056 117 10 7 chr4 165390521 165390820 -18897842 + AluSx SINE Alu 1 300 -12 378 279 162 17 chr4 165391151 165391448 -18897214 + HAL1 LINE L1 1564 1903 -604 7684 140 72 14 chr4 165391798 165393605 -18895057 + L1MC1 LINE L1 7 2014 -4412 5169 253 20 49 chr4 165393606 165395291 -18893371 + L1MC1 LINE L1 3592 5224 -1202 2193 133 3 0 chr4 165395291 165395600 -18893062 + AluSg SINE Alu 1 310 0 5169 253 20 49 chr4 165395600 165395674 -18892988 + L1MC1 LINE L1 5224 5299 -1127 * 15004 154 15 13 chr4 165395662 165396272 -18892390 + L1MA3 LINE L1 2170 2777 -3528 2363 96 0 13 chr4 165396272 165396574 -18892088 + AluSg SINE Alu 1 298 -12 15004 154 15 13 chr4 165396574 165399614 -18889048 + L1MA3 LINE L1 2777 5832 -473 2245 122 0 0 chr4 165399614 165399910 -18888752 + AluSg SINE Alu 1 296 -14 15004 154 15 13 chr4 165399910 165400377 -18888285 + L1MA3 LINE L1 5832 6297 -8 1215 155 26 35 chr4 165400411 165400571 -18888091 + L1MC1 LINE L1 5303 5463 -1063 2264 115 7 0 chr4 165400571 165400867 -18887795 - AluSx SINE Alu -14 298 1 1215 155 26 35 chr4 165400867 165401194 -18887468 + L1MC1 LINE L1 5463 5781 -745 1874 184 107 41 chr4 165401198 165401686 -18886976 - MLT2B1 LTR ERVL 0 520 1 3022 156 82 54 chr4 165401686 165402405 -18886257 - ERVL-B1 LTR ERVL -7 5757 5019 343 82 0 0 chr4 165402402 165402451 -18886211 + ERVL LTR ERVL 4920 4968 -796 * 4878 150 7 0 chr4 165402457 165403269 -18885393 + L1MC1 LINE L1 5796 6613 0 231 125 0 0 chr4 165403275 165403315 -18885347 + (CA)n Simple_repeat Simple_repeat 2 41 0 636 219 0 8 chr4 165403409 165403528 -18885134 + FLAM_A SINE Alu 1 118 -15 21 36 0 0 chr4 165403541 165403569 -18885093 + AT_rich Low_complexity Low_complexity 1 28 0 296 266 145 0 chr4 165403571 165403695 -18884967 + MIR SINE MIR 120 261 -1 325 280 174 0 chr4 165405203 165405335 -18883327 - MIR3 SINE MIR -17 191 37 531 315 82 4 chr4 165405360 165405617 -18883045 + Tigger8 DNA MER2_type 30 306 -360 24 0 0 0 chr4 165406294 165406318 -18882344 + AT_rich Low_complexity Low_complexity 1 24 0 284 330 43 0 chr4 165408113 165408207 -18880455 - L2 LINE L2 0 3272 3175 222 312 184 0 chr4 165408259 165408368 -18880294 - MIR SINE MIR -60 148 20 210 318 0 0 chr4 165408604 165408667 -18879995 + MIR SINE MIR 91 153 -109 315 151 55 14 chr4 165408671 165408744 -18879918 + AluJ/FRAM SINE Alu 224 299 -3 257 217 29 0 chr4 165409153 165409222 -18879440 + L1ME3A LINE L1 6095 6165 -5 188 278 0 69 chr4 165409479 165409507 -18879155 + MIR SINE MIR 125 153 -109 2179 126 0 0 chr4 165409507 165409809 -18878853 + AluSx SINE Alu 1 302 -10 188 278 0 69 chr4 165409809 165409852 -18878810 + MIR SINE MIR 153 191 -71 2070 162 18 3 chr4 165411218 165411601 -18877061 - MLT1B LTR MaLR -1 389 1 255 296 49 170 chr4 165411925 165412419 -18876243 + L2 LINE L2 2834 3267 -5 2058 122 3 10 chr4 165412604 165412898 -18875764 - AluSq SINE Alu -21 292 1 552 170 0 11 chr4 165413776 165413870 -18874792 - FLAM_A SINE Alu -32 110 18 23 97 0 0 chr4 165415142 165415214 -18873448 + AT_rich Low_complexity Low_complexity 1 72 0 219 140 60 0 chr4 165415535 165415585 -18873077 + (CATA)n Simple_repeat Simple_repeat 3 55 0 21 0 0 0 chr4 165415749 165415770 -18872892 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 165417959 165417980 -18870682 + GC_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr4 165418214 165418250 -18870412 + GC_rich Low_complexity Low_complexity 1 36 0 264 292 56 0 chr4 165419450 165419522 -18869140 - MIR SINE MIR -19 243 168 374 298 81 0 chr4 165419801 165419925 -18868737 - MIR3 SINE MIR -68 140 7 225 94 0 0 chr4 165420166 165420198 -18868464 + (T)n Simple_repeat Simple_repeat 1 32 0 294 149 0 0 chr4 165420301 165420348 -18868314 + Alu SINE Alu 247 293 -9 225 292 95 54 chr4 165420545 165420713 -18867949 - MIR SINE MIR 0 262 88 717 301 123 42 chr4 165420815 165421221 -18867441 + L2 LINE L2 2367 2805 -509 330 308 91 28 chr4 165421297 165421440 -18867222 + L2 LINE L2 3156 3307 -6 812 226 72 14 chr4 165421954 165422175 -18866487 + MIR SINE MIR 29 262 0 381 276 72 39 chr4 165422184 165422365 -18866297 + MIR SINE MIR 70 256 -6 209 242 136 0 chr4 165422385 165422451 -18866211 + MIR3 SINE MIR 108 182 -26 1937 136 20 3 chr4 165422806 165423100 -18865562 - AluJb SINE Alu -13 299 1 336 277 189 19 chr4 165423181 165423340 -18865322 - MER5A DNA MER1_type -1 188 3 270 219 41 55 chr4 165423967 165424040 -18864622 - L3b LINE CR1 -98 1485 1414 2183 119 0 0 chr4 165424373 165424711 -18863951 - AluSx SINE Alu 0 338 1 2035 144 0 10 chr4 165426021 165426338 -18862324 + AluSx SINE Alu 1 314 0 187 30 30 30 chr4 165426340 165426373 -18862289 + (TA)n Simple_repeat Simple_repeat 2 34 0 527 167 60 181 chr4 165426463 165426554 -18862108 + MIR SINE MIR 12 64 -198 2092 122 3 0 chr4 165426554 165426850 -18861812 + AluSp SINE Alu 3 299 -14 527 167 60 181 chr4 165426850 165426974 -18861688 + MIR SINE MIR 64 201 -61 21 0 0 0 chr4 165426989 165427010 -18861652 + AT_rich Low_complexity Low_complexity 1 21 0 724 292 143 9 chr4 165427246 165427588 -18861074 - MLT1J2 LTR MaLR -21 429 42 231 314 90 25 chr4 165427827 165428184 -18860478 + L1M4 LINE L1 2170 2549 -3597 397 264 121 17 chr4 165428225 165428456 -18860206 + L1M4 LINE L1 2676 2930 -3216 367 300 77 59 chr4 165429872 165430029 -18858633 + MIR SINE MIR 23 192 -58 233 224 172 0 chr4 165430125 165430183 -18858479 - L2 LINE L2 -4 3309 3242 400 82 35 118 chr4 165430995 165431080 -18857582 - MER103 DNA DNA -81 85 8 2107 140 0 0 chr4 165431230 165431530 -18857132 + AluJb SINE Alu 1 300 -12 276 326 12 12 chr4 165431812 165431898 -18856764 + MIR SINE MIR 20 105 -157 208 227 23 0 chr4 165431947 165431991 -18856671 + L2 LINE L2 3251 3295 -18 2243 102 3 7 chr4 165432507 165432811 -18855851 - AluSc SINE Alu -6 303 1 757 180 0 16 chr4 165434362 165434490 -18854172 + AluJo SINE Alu 11 136 -176 205 278 144 31 chr4 165434539 165434636 -18854026 - L2 LINE L2 -10 3262 3155 1525 185 10 86 chr4 165434814 165434923 -18853739 + AluJo SINE Alu 1 117 -195 1552 175 19 11 chr4 165434923 165435192 -18853470 - AluJo SINE Alu -14 298 28 1525 185 10 86 chr4 165435192 165435395 -18853267 + AluJo SINE Alu 117 289 -23 186 133 0 0 chr4 165436888 165436918 -18851744 + (A)n Simple_repeat Simple_repeat 1 30 0 2240 103 3 0 chr4 165436973 165437265 -18851397 + AluSx SINE Alu 5 297 -15 467 289 65 81 chr4 165437302 165437562 -18851100 + L2 LINE L2 2996 3251 -21 206 271 235 12 chr4 165437586 165437671 -18850991 + MIR SINE MIR 49 152 -110 1868 159 3 23 chr4 165437754 165438055 -18850607 - AluJb SINE Alu -15 297 3 1893 168 71 13 chr4 165438548 165438929 -18849733 + MER57A LTR ERV1 1 403 0 2478 85 0 0 chr4 165439166 165439472 -18849190 + AluY SINE Alu 5 310 -1 2468 91 3 0 chr4 165440014 165440323 -18848339 - AluSp SINE Alu -1 312 3 2128 161 25 2 chr4 165440496 165440901 -18847761 - L1MC1 LINE L1 -1 6332 5919 4360 193 41 40 chr4 165440903 165442006 -18846656 - L1MC1 LINE L1 -581 5752 4652 2640 151 36 2 chr4 165442006 165442418 -18846244 + MSTB LTR MaLR 1 426 0 4360 193 41 40 chr4 165442418 165443606 -18845056 - L1MC1 LINE L1 -1681 4652 3444 1829 170 0 0 chr4 165443788 165444065 -18844597 - AluJb SINE Alu -35 277 1 496 267 0 9 chr4 165444521 165444637 -18844025 + FLAM_C SINE Alu 2 116 -17 2014 138 3 39 chr4 165444830 165445141 -18843521 + AluJb SINE Alu 1 300 -12 810 152 76 27 chr4 165445647 165445831 -18842831 + L1MB3 LINE L1 5991 6183 0 21 0 0 0 chr4 165446089 165446110 -18842552 + AT_rich Low_complexity Low_complexity 1 21 0 238 135 83 6 chr4 165446113 165446269 -18842393 + (TA)n Simple_repeat Simple_repeat 1 168 0 324 80 105 6 chr4 165446306 165446468 -18842194 + (TA)n Simple_repeat Simple_repeat 2 179 0 2045 128 0 7 chr4 165450143 165450432 -18838230 + AluSx SINE Alu 1 287 -25 260 127 18 0 chr4 165450432 165450487 -18838175 + (TA)n Simple_repeat Simple_repeat 1 56 0 272 223 161 80 chr4 165451469 165451581 -18837081 - L2 LINE L2 0 3313 3193 551 279 202 12 chr4 165451624 165451946 -18836716 - L2 LINE L2 -107 3206 2824 508 252 82 122 chr4 165452154 165452283 -18836379 - L2 LINE L2 -498 2816 2683 2411 84 0 0 chr4 165452283 165452579 -18836083 - AluSx SINE Alu -16 296 1 508 252 82 122 chr4 165452579 165452778 -18835884 - L2 LINE L2 -631 2683 2501 196 293 70 64 chr4 165452788 165452945 -18835717 - L2 LINE L2 -433 2881 2724 366 314 65 51 chr4 165453105 165453398 -18835264 - L2 LINE L2 -854 2460 2164 202 291 110 53 chr4 165453435 165453809 -18834853 - L2 LINE L2 -1300 2014 1620 1827 184 3 0 chr4 165454846 165455151 -18833511 + AluJo SINE Alu 1 306 -6 1790 189 80 22 chr4 165456213 165456664 -18831998 - MLT1D LTR MaLR -7 498 22 207 0 0 0 chr4 165456912 165456935 -18831727 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 341 133 0 0 chr4 165457084 165457144 -18831518 - Alu SINE Alu -3 299 240 2080 111 24 0 chr4 165457885 165458183 -18830479 + AluSx SINE Alu 1 305 -7 2161 122 10 0 chr4 165458542 165458838 -18829824 + AluSx SINE Alu 5 303 -9 697 269 24 0 chr4 165458999 165459166 -18829496 + MIR SINE MIR 92 262 0 2233 107 0 0 chr4 165459247 165459537 -18829125 + AluSg SINE Alu 1 290 -20 27 0 0 0 chr4 165459537 165459564 -18829098 + AT_rich Low_complexity Low_complexity 1 27 0 229 358 83 17 chr4 165459752 165459872 -18828790 - L2 LINE L2 -4 3309 3182 246 327 5 63 chr4 165460317 165460513 -18828149 - MIR SINE MIR -56 206 22 2192 130 0 3 chr4 165460928 165461236 -18827426 + AluSx SINE Alu 1 307 -5 331 257 0 0 chr4 165461429 165461503 -18827159 - MIR SINE MIR -2 260 187 698 153 24 161 chr4 165462086 165462340 -18826322 + MER20 DNA MER1_type 1 219 0 1017 157 40 58 chr4 165462753 165462976 -18825686 - MER20 DNA MER1_type 0 219 1 813 250 49 61 chr4 165463310 165463574 -18825088 - MIR SINE MIR 0 262 2 2063 122 37 0 chr4 165463648 165463943 -18824719 - AluSq SINE Alu -7 306 1 183 286 0 0 chr4 165464054 165464103 -18824559 + MIR SINE MIR 24 72 -190 626 289 86 35 chr4 165464119 165464458 -18824204 + MLT1I LTR MaLR 40 395 -14 948 215 11 6 chr4 165464467 165464644 -18824018 + MIR SINE MIR 69 246 -16 706 186 0 0 chr4 165465321 165465439 -18823223 + FLAM_C SINE Alu 1 118 -15 1316 156 52 99 chr4 165465794 165466179 -18822483 + MER31B LTR ERV1 100 466 0 216 340 145 19 chr4 165466935 165467094 -18821568 - L3 LINE CR1 -1398 179 1 2011 128 7 10 chr4 165467701 165467997 -18820665 + AluSx SINE Alu 1 295 -17 1848 158 3 10 chr4 165468158 165468461 -18820201 - AluJb SINE Alu -11 301 1 856 172 66 10 chr4 165468551 165468749 -18819913 - L1MA8 LINE L1 -12 6279 6071 2421 50 0 0 chr4 165468911 165469224 -18819438 + AluY SINE Alu 1 313 0 23 78 0 0 chr4 165470048 165470099 -18818563 + AT_rich Low_complexity Low_complexity 1 51 0 705 245 5 43 chr4 165470429 165470537 -18818125 - MER5A DNA MER1_type -9 180 80 1821 156 101 16 chr4 165470537 165470902 -18817760 + MSTD LTR MaLR 1 396 0 705 245 5 43 chr4 165470902 165470977 -18817685 - MER5A DNA MER1_type -109 80 4 1879 117 0 0 chr4 165471228 165471507 -18817155 + AluSx SINE Alu 36 314 0 6880 65 11 7 chr4 165475721 165476636 -18812026 + L1PA8 LINE L1 5254 6172 0 1107 174 65 115 chr4 165476822 165476908 -18811754 + MLT1A1 LTR MaLR 1 90 -275 2496 62 0 3 chr4 165476908 165477214 -18811448 + AluY SINE Alu 1 305 -6 1107 174 65 115 chr4 165477214 165477511 -18811151 + MLT1A1 LTR MaLR 90 365 0 1368 243 44 66 chr4 165478516 165479052 -18809610 - L2 LINE L2 0 3313 2786 644 315 65 31 chr4 165482772 165483128 -18805534 + L3b LINE CR1 1114 1481 -102 23 0 0 0 chr4 165483230 165483253 -18805409 + AT_rich Low_complexity Low_complexity 1 23 0 501 62 0 0 chr4 165483561 165483626 -18805036 + (CA)n Simple_repeat Simple_repeat 2 66 0 1838 171 0 3 chr4 165483730 165484028 -18804634 - AluJo SINE Alu -13 299 3 466 188 8 8 chr4 165484182 165484299 -18804363 + GA-rich Low_complexity Low_complexity 4 120 0 241 290 159 34 chr4 165484299 165484417 -18804245 - MIR3 SINE MIR -29 179 42 1716 137 33 52 chr4 165484547 165484853 -18803809 - AluJo SINE Alu 0 312 13 423 269 156 18 chr4 165484940 165485161 -18803501 - MIR SINE MIR -7 255 12 509 265 8 0 chr4 165485322 165485454 -18803208 - MER94 DNA DNA 0 134 2 25 31 0 0 chr4 165585980 165586012 -18702650 + AT_rich Low_complexity Low_complexity 1 32 0 2386 140 107 19 chr4 165586527 165588583 -18700079 + SATR1 Satellite Satellite 1 2238 0 1593 185 142 13 chr4 165588609 165589004 -18699658 + SATR1 Satellite Satellite 1 446 -24 426 374 49 0 chr4 165590134 165590337 -18698325 - MIR SINE MIR -49 213 1 2115 118 20 10 chr4 165591546 165591852 -18696810 + AluSg SINE Alu 1 309 -1 2041 138 0 23 chr4 165592425 165592729 -18695933 + AluSx SINE Alu 1 297 -15 266 274 202 12 chr4 165593467 165593551 -18695111 - L2 LINE L2 -5 3267 3168 2232 122 0 0 chr4 165593728 165594040 -18694622 - AluSx SINE Alu 0 312 1 606 274 18 18 chr4 165594096 165594260 -18694402 - MIR SINE MIR -54 208 45 989 114 20 13 chr4 165594747 165594896 -18693766 + AluSq/x SINE Alu 1 150 -162 4532 181 56 47 chr4 165595011 165596107 -18692555 - Charlie1a DNA MER1_type -349 1106 2 1582 184 13 17 chr4 165596324 165596623 -18692039 + AluJo SINE Alu 1 298 -14 1936 154 7 0 chr4 165596853 165597151 -18691511 - AluSx SINE Alu -12 300 1 774 200 156 105 chr4 165597306 165597811 -18690851 - L1MC5 LINE L1 -781 7180 6650 1015 181 0 45 chr4 165598026 165598225 -18690437 - AluJo SINE Alu -122 190 1 226 276 172 30 chr4 165598376 165598579 -18690083 - L1MC4a LINE L1 -1630 6178 5947 397 253 72 17 chr4 165598608 165598780 -18689882 - L1ME1 LINE L1 -303 5863 5678 1246 259 184 46 chr4 165599371 165600075 -18688587 - L2 LINE L2 -1815 1499 681 2023 149 0 3 chr4 165600075 165600376 -18688286 - AluSx SINE Alu -12 300 1 1246 259 184 46 chr4 165600376 165600431 -18688231 - L2 LINE L2 -2633 681 635 2109 86 41 0 chr4 165602304 165602596 -18686066 - AluSq SINE Alu -9 304 1 996 125 0 31 chr4 165604082 165604242 -18684420 + AluSg/x SINE Alu 143 297 -13 21 0 0 0 chr4 165604495 165604516 -18684146 + AT_rich Low_complexity Low_complexity 1 21 0 1889 133 0 10 chr4 165605621 165605923 -18682739 - AluSq SINE Alu -14 299 1 202 182 0 0 chr4 165606207 165606240 -18682422 + (CCCG)n Simple_repeat Simple_repeat 3 35 0 2388 145 103 5 chr4 165607118 165608863 -18679799 + SATR1 Satellite Satellite 1 1916 -122 22 0 0 0 chr4 165610208 165610230 -18678432 + AT_rich Low_complexity Low_complexity 1 22 0 552 237 6 85 chr4 165613690 165613746 -18674916 - MIR SINE MIR 0 262 203 1382 174 23 43 chr4 165613746 165614076 -18674586 - AluJo SINE Alu 0 312 1 552 237 6 85 chr4 165614076 165614196 -18674466 - MIR SINE MIR -59 203 100 213 281 0 18 chr4 165615853 165615910 -18672752 - L2 LINE L2 0 3272 3217 498 227 86 0 chr4 165616523 165616686 -18671976 - MER112 DNA MER1_type 0 260 84 2222 59 0 4 chr4 165616795 165617068 -18671594 - AluY SINE Alu -35 276 5 5923 76 7 3 chr4 165617379 165618154 -18670508 - L1PA8 LINE L1 -1 6171 5394 * 6282 104 14 15 chr4 165618151 165619124 -18669538 + L1PA8 LINE L1 4418 5389 -757 987 177 12 0 chr4 165619496 165619660 -18669002 - FRAM SINE Alu -12 164 1 408 278 62 91 chr4 165620395 165620645 -18668017 + MIR SINE MIR 5 262 0 585 196 8 53 chr4 165620685 165620818 -18667844 + FLAM_A SINE Alu 1 127 -6 207 0 0 0 chr4 165620936 165620959 -18667703 + (A)n Simple_repeat Simple_repeat 1 23 0 2032 122 20 0 chr4 165620964 165621258 -18667404 + AluSg SINE Alu 1 300 -10 1163 178 85 12 chr4 165621741 165621999 -18666663 + L1M4 LINE L1 4885 5161 -985 875 272 45 0 chr4 165622054 165622278 -18666384 - MIR SINE MIR 0 262 29 603 85 0 85 chr4 165622901 165623007 -18665655 - AluSg/x SINE Alu 0 312 216 2190 167 65 12 chr4 165623869 165624299 -18664363 - MSTB2 LTR MaLR 0 457 5 198 298 0 0 chr4 165624670 165624727 -18663935 + L2 LINE L2 3251 3307 -6 28 29 0 0 chr4 165624780 165624815 -18663847 + AT_rich Low_complexity Low_complexity 1 35 0 732 269 91 77 chr4 165624927 165625291 -18663371 - MLT1J2 LTR MaLR -15 431 63 329 357 31 0 chr4 165625496 165625625 -18663037 - MIR3 SINE MIR -46 162 30 1281 146 8 8 chr4 165625857 165626097 -18662565 - L1MA9 LINE L1 -5 6307 6068 416 310 35 20 chr4 165626118 165626373 -18662289 + L1ME LINE L1 5560 5818 -303 24 85 0 0 chr4 165626538 165626597 -18662065 + AT_rich Low_complexity Low_complexity 1 59 0 901 150 0 0 chr4 165626598 165626725 -18661937 - FLAM_C SINE Alu -16 127 1 391 296 113 0 chr4 165627205 165627320 -18661342 + L2 LINE L2 3145 3272 0 242 250 39 0 chr4 165627395 165627447 -18661215 - L2 LINE L2 -11 3261 3208 2048 128 20 0 chr4 165628318 165628614 -18660048 - AluSx SINE Alu -8 304 3 21 36 0 0 chr4 165629303 165629331 -18659331 + AT_rich Low_complexity Low_complexity 1 28 0 1739 193 0 0 chr4 165629346 165629647 -18659015 - AluJo SINE Alu -11 301 1 763 144 0 8 chr4 165630066 165630184 -18658478 + FLAM_C SINE Alu 1 117 -16 716 285 43 10 chr4 165630308 165630515 -18658147 + MIR SINE MIR 1 214 -48 4968 140 48 14 chr4 165630533 165631407 -18657255 + L1MA7 LINE L1 5387 6290 -1 226 266 47 0 chr4 165631699 165631763 -18656899 + MER5A DNA MER1_type 123 189 0 421 277 200 0 chr4 165631772 165631927 -18656735 + MER5A DNA MER1_type 4 189 0 230 235 314 18 chr4 165631930 165632039 -18656623 + MIR3 SINE MIR 15 165 -43 221 333 138 0 chr4 165632075 165632198 -18656464 - MIR SINE MIR -121 141 2 2412 87 0 0 chr4 165633197 165633496 -18655166 - AluSc SINE Alu -8 301 3 484 209 227 0 chr4 165633580 165633752 -18654910 + MER58C DNA MER1_type 1 211 -4 958 153 34 6 chr4 165633859 165634036 -18654626 - MER2 DNA MER2_type -136 209 28 1921 148 3 16 chr4 165634668 165634973 -18653689 + AluJb SINE Alu 1 301 -11 1987 126 0 4 chr4 165635939 165636217 -18652445 + AluSq SINE Alu 37 313 0 208 262 139 25 chr4 165636255 165636377 -18652285 + MIR SINE MIR 113 248 -14 235 157 300 0 chr4 165636905 165636975 -18651687 - Charlie5 DNA MER1_type -27 2585 2495 357 126 105 21 chr4 165637003 165637098 -18651564 - Charlie5 DNA MER1_type -94 2518 2416 232 248 0 72 chr4 165637088 165637156 -18651506 - Charlie5 DNA MER1_type -2473 151 94 * 1363 131 138 72 chr4 165637156 165637447 -18651215 + AluJo SINE Alu 1 310 -2 232 248 0 72 chr4 165637447 165637503 -18651159 - Charlie5 DNA MER1_type -2530 94 36 1705 71 0 0 chr4 165638089 165638299 -18650363 + AluSg/x SINE Alu 103 312 0 448 256 138 59 chr4 165638321 165638524 -18650138 - MIR SINE MIR -32 230 12 3050 46 0 0 chr4 165639758 165640128 -18648534 + L1PA5 LINE L1 5782 6151 -3 21 0 0 0 chr4 165640152 165640173 -18648489 + AT_rich Low_complexity Low_complexity 1 21 0 374 191 137 24 chr4 165640352 165640520 -18648142 + L1ME LINE L1 5292 5478 -2330 281 284 63 31 chr4 165640592 165640719 -18647943 + L1ME LINE L1 5615 5745 -376 334 274 80 9 chr4 165641247 165641360 -18647302 + MIR SINE MIR 87 207 -55 2468 49 0 0 chr4 165643490 165643778 -18644884 + AluY SINE Alu 1 288 -23 1754 140 48 27 chr4 165643800 165644092 -18644570 + AluSx SINE Alu 3 300 -12 704 135 36 9 chr4 165644219 165644330 -18644332 + FRAM SINE Alu 43 156 -20 634 277 84 21 chr4 165644525 165644763 -18643899 + MIR SINE MIR 8 260 -2 2710 65 6 8 chr4 165644920 165645276 -18643386 + THE1A LTR MaLR 1 355 0 186 333 32 0 chr4 165646214 165646277 -18642385 + L2 LINE L2 3234 3298 -15 2049 110 7 3 chr4 165646683 165646965 -18641697 + AluSx SINE Alu 18 300 -12 1837 150 3 45 chr4 165647428 165647652 -18641010 - MLT1B LTR MaLR 0 390 183 2115 143 0 6 chr4 165647652 165647966 -18640696 - AluSx SINE Alu 0 312 1 1837 150 3 45 chr4 165647966 165648074 -18640588 - MLT1B LTR MaLR -207 183 72 3141 135 23 128 chr4 165648074 165648735 -18639927 - MER4D LTR ERV1 0 903 174 393 22 0 0 chr4 165648735 165648781 -18639881 + (TA)n Simple_repeat Simple_repeat 2 47 0 2100 113 7 10 chr4 165648781 165649072 -18639590 - AluSg SINE Alu -20 290 1 3141 135 23 128 chr4 165649072 165649204 -18639458 - MER4D LTR ERV1 -727 176 78 2783 157 15 8 chr4 165649211 165649688 -18638974 + MER21A-int LTR ERV1 3712 4191 0 1191 151 118 8 chr4 165649688 165649926 -18638736 + MER21A LTR ERV1 1 264 -667 2027 158 42 22 chr4 165649927 165650287 -18638375 + MER21A LTR ERV1 371 737 -194 397 210 60 20 chr4 165650313 165650413 -18638249 + MER20B DNA MER1_type 2 105 -678 402 188 0 104 chr4 165650487 165650583 -18638079 + MER21B LTR ERV1 12 97 -766 3373 204 29 33 chr4 165650589 165650712 -18637950 + MER21B LTR ERV1 19 141 -722 1852 134 43 40 chr4 165650712 165651085 -18637577 + THE1C LTR MaLR 1 374 -1 3373 204 29 33 chr4 165651085 165651685 -18636977 + MER21B LTR ERV1 141 739 -124 1104 172 0 0 chr4 165651822 165651991 -18636671 - AluSx SINE Alu -143 169 1 2108 107 0 4 chr4 165652205 165652514 -18636148 - AluSg SINE Alu 0 308 1 1939 169 48 127 chr4 165653219 165653881 -18634781 - L1MC3 LINE L1 -2 8040 7445 23 0 0 0 chr4 165654213 165654236 -18634426 + AT_rich Low_complexity Low_complexity 1 23 0 1685 163 35 0 chr4 165654311 165654594 -18634068 - AluJb SINE Alu -19 293 1 330 303 37 50 chr4 165655589 165655820 -18632842 - L1MC4a LINE L1 -104 6017 5782 1474 172 68 40 chr4 165656054 165656350 -18632312 - AluJb SINE Alu -8 304 1 35 41 0 0 chr4 165656667 165656716 -18631946 + AT_rich Low_complexity Low_complexity 1 49 0 966 221 36 0 chr4 165656842 165657037 -18631625 + MER58A DNA MER1_type 1 202 -22 812 290 62 12 chr4 165657155 165657476 -18631186 - L1MC4a LINE L1 -2144 5664 5328 521 239 103 82 chr4 165657498 165657924 -18630738 - LTR37B LTR ERV1 -33 435 1 9445 57 13 112 chr4 165657965 165659501 -18629161 - SVA Other Other -2 1384 1 1104 176 0 0 chr4 165660389 165660576 -18628086 - AluSg/x SINE Alu 0 312 126 1539 158 4 30 chr4 165660600 165660865 -18627797 - AluSx SINE Alu -19 293 36 1291 142 73 21 chr4 165661124 165661412 -18627250 - Charlie1 DNA MER1_type 0 2761 2459 1372 35 6 0 chr4 165661513 165661682 -18626980 + L1PA4 LINE L1 5986 6155 0 2297 98 0 0 chr4 165661766 165662061 -18626601 - AluSg SINE Alu -15 295 1 831 144 0 15 chr4 165662645 165662777 -18625885 + FLAM_C SINE Alu 1 130 -3 418 358 60 0 chr4 165663247 165663398 -18625264 + MIR3 SINE MIR 31 190 -18 795 265 44 16 chr4 165663405 165663654 -18625008 - MIR SINE MIR -3 259 4 2228 104 3 22 chr4 165665520 165665836 -18622826 - AluSx SINE Alu -2 310 1 1933 122 3 61 chr4 165666396 165666708 -18621954 - AluSx SINE Alu -18 294 1 21 0 0 0 chr4 165667138 165667159 -18621503 + AT_rich Low_complexity Low_complexity 1 21 0 22 65 0 0 chr4 165667742 165667773 -18620889 + AT_rich Low_complexity Low_complexity 1 31 0 583 339 39 12 chr4 165668727 165668981 -18619681 - MIR SINE MIR 0 262 2 192 357 14 0 chr4 165669044 165669114 -18619548 - MIR SINE MIR -122 86 16 880 219 103 18 chr4 165669600 165669824 -18618838 - MIR SINE MIR -7 255 13 23 0 0 0 chr4 165669830 165669853 -18618809 + AT_rich Low_complexity Low_complexity 1 23 0 2333 92 0 0 chr4 165669949 165670244 -18618418 + AluSq SINE Alu 1 295 -18 21 0 0 0 chr4 165670896 165670917 -18617745 + AT_rich Low_complexity Low_complexity 1 21 0 402 93 0 0 chr4 165671189 165671243 -18617419 - AluSq/x SINE Alu -174 139 86 1004 60 0 0 chr4 165671259 165671406 -18617256 - AluSp/q SINE Alu 0 314 168 1880 143 42 14 chr4 165671593 165671950 -18616712 - L1MA6 LINE L1 0 6300 5934 505 267 74 34 chr4 165673084 165673260 -18615402 - MLT1G LTR MaLR -7 560 378 1090 110 50 6 chr4 165673289 165673471 -18615191 - L1MA3 LINE L1 -7 6298 6109 202 269 0 0 chr4 165673563 165673615 -18615047 + CT-rich Low_complexity Low_complexity 1 52 0 531 238 247 9 chr4 165673617 165673840 -18614822 - MLT1G LTR MaLR -305 285 10 1973 200 44 48 chr4 165673847 165674346 -18614316 - MLT1D LTR MaLR -2 503 7 2065 129 0 0 chr4 165674785 165675071 -18613591 + AluSg SINE Alu 1 286 -24 4991 119 46 7 chr4 165675190 165675986 -18612676 - Tigger1 DNA MER2_type -86 2332 1506 4025 176 14 12 chr4 165675986 165676719 -18611943 - MER50 LTR ERV1 0 734 1 1764 112 159 0 chr4 165676724 165677020 -18611642 - Tigger1 DNA MER2_type -914 1504 1162 1106 171 24 33 chr4 165677095 165677306 -18611356 + AluJo SINE Alu 1 209 -103 2424 199 24 0 chr4 165677309 165677766 -18610896 - Tigger1 DNA MER2_type -1950 468 1 715 136 8 0 chr4 165677971 165678089 -18610573 - L1PB3 LINE L1 0 6154 6036 186 43 0 0 chr4 165678100 165678123 -18610539 + (T)n Simple_repeat Simple_repeat 1 23 0 218 341 127 16 chr4 165679367 165679493 -18609169 - L2 LINE L2 -12 3260 3121 467 274 89 34 chr4 165679853 165680032 -18608630 + MIR SINE MIR 57 245 -17 646 175 7 36 chr4 165680320 165680457 -18608205 + FLAM_A SINE Alu 1 133 0 1285 173 41 25 chr4 165680522 165680765 -18607897 - AluJo SINE Alu -65 247 1 24 0 0 0 chr4 165682160 165682184 -18606478 + AT_rich Low_complexity Low_complexity 1 24 0 363 251 17 22 chr4 165683370 165683549 -18605113 + (TA)n Simple_repeat Simple_repeat 1 178 0 1951 135 24 3 chr4 165683837 165684126 -18604536 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr4 165684197 165684218 -18604444 + AT_rich Low_complexity Low_complexity 1 21 0 808 217 11 6 chr4 165684290 165684465 -18604197 + AluJo SINE Alu 40 215 -97 378 150 293 7 chr4 165684546 165684686 -18603976 - L1MA7 LINE L1 -1 6290 6111 1683 194 0 3 chr4 165684707 165685000 -18603662 - AluJb SINE Alu -19 293 2 557 231 26 0 chr4 165685309 165685426 -18603236 - FLAM_A SINE Alu -13 120 1 233 275 46 9 chr4 165685537 165685646 -18603016 - L1M4c LINE L1 -4247 2137 2025 2105 85 50 0 chr4 165685803 165686085 -18602577 - AluSq SINE Alu -17 296 1 1522 186 34 27 chr4 165686303 165686598 -18602064 - AluJb SINE Alu -15 297 1 438 253 40 33 chr4 165688347 165688497 -18600165 + MER103 DNA DNA 16 166 0 1989 99 27 27 chr4 165691688 165692004 -18596658 + AluSg SINE Alu 1 310 0 297 0 0 0 chr4 165693031 165693064 -18595598 + (TC)n Simple_repeat Simple_repeat 2 34 0 24 91 0 0 chr4 165693651 165693717 -18594945 + AT_rich Low_complexity Low_complexity 1 66 0 1510 151 4 15 chr4 165694363 165694622 -18594040 - AluJb SINE Alu -56 256 1 220 286 0 32 chr4 165696190 165696253 -18592409 - L2 LINE L2 -2 3311 3251 1932 264 167 15 chr4 165696441 165697330 -18591332 - L2 LINE L2 -244 3069 2050 889 203 43 48 chr4 165697387 165697594 -18591068 + AluJo SINE Alu 1 206 -106 2713 161 147 16 chr4 165697694 165701929 -18586733 + SATR1 Satellite Satellite 1 4790 -120 1295 177 283 3 chr4 165701961 165702631 -18586031 + SATR1 Satellite Satellite 1 857 -97 212 94 19 57 chr4 165702631 165702684 -18585978 + (TTATA)n Simple_repeat Simple_repeat 4 54 0 403 195 97 65 chr4 165702692 165702846 -18585816 + SATR1 Satellite Satellite 233 391 -79 8086 29 3 0 chr4 165702940 165704305 -18584357 - L1PA3 LINE L1 -1 6154 4786 8851 23 0 0 chr4 165704305 165705311 -18583351 + L1PA3 LINE L1 3784 4789 -1357 2045 133 0 10 chr4 165705317 165705626 -18583036 - AluSx SINE Alu -6 306 1 987 181 0 22 chr4 165705947 165706129 -18582533 + AluJb SINE Alu 129 306 -6 198 0 0 0 chr4 165706516 165706538 -18582124 + (TG)n Simple_repeat Simple_repeat 1 22 0 1674 140 7 51 chr4 165706558 165706851 -18581811 - AluSx SINE Alu -32 280 1 205 250 31 16 chr4 165707102 165707166 -18581496 - L2 LINE L2 0 3272 3208 1669 148 18 14 chr4 165707307 165707584 -18581078 + AluJo SINE Alu 21 298 -14 346 155 12 12 chr4 165707602 165707686 -18580976 + GA-rich Low_complexity Low_complexity 1 84 0 455 96 14 14 chr4 165708718 165708791 -18579871 + MADE1 DNA Mariner 1 73 -7 1672 115 8 8 chr4 165709314 165709566 -18579096 - AluSx SINE Alu -3 309 58 1036 98 0 0 chr4 165709668 165709801 -18578861 - AluSp SINE Alu -180 133 1 234 62 0 0 chr4 165709801 165709833 -18578829 + (T)n Simple_repeat Simple_repeat 1 32 0 227 236 34 45 chr4 165710235 165710324 -18578338 - MIR SINE MIR -100 162 75 181 340 53 21 chr4 165710607 165710701 -18577961 + L2 LINE L2 2939 3035 -237 1051 208 206 18 chr4 165710820 165711214 -18577448 - Charlie1a DNA MER1_type -495 960 493 586 180 174 39 chr4 165711872 165712050 -18576612 - Charlie1a DNA MER1_type -945 510 309 535 211 0 0 chr4 165712072 165712162 -18576500 - FLAM_A SINE Alu -20 122 33 525 248 163 26 chr4 165712173 165712362 -18576300 - Charlie1a DNA MER1_type -1165 290 57 279 272 189 12 chr4 165712559 165712728 -18575934 - L1ME LINE L1 -315 5806 5608 28 29 0 0 chr4 165713054 165713089 -18575573 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr4 165713378 165713400 -18575262 + AT_rich Low_complexity Low_complexity 1 22 0 257 133 0 83 chr4 165713550 165713610 -18575052 - L2 LINE L2 -95 3218 3164 2126 120 3 7 chr4 165714765 165715064 -18573598 - AluSx SINE Alu -14 298 1 201 167 0 0 chr4 165716108 165716144 -18572518 + A-rich Low_complexity Low_complexity 1 36 0 307 326 99 17 chr4 165716144 165716316 -18572346 - MIR3 SINE MIR -7 201 16 530 231 138 36 chr4 165716437 165716632 -18572030 - MIR SINE MIR -46 216 2 2226 114 10 0 chr4 165717517 165717825 -18570837 + AluSx SINE Alu 1 311 -1 404 239 110 60 chr4 165718336 165718554 -18570108 - L1ME4a LINE L1 -223 5898 5670 1378 83 0 0 chr4 165718562 165718730 -18569932 - AluSg/x SINE Alu -10 299 132 260 206 155 10 chr4 165718987 165719084 -18569578 - L1MC4a LINE L1 -1884 5924 5814 2202 134 0 0 chr4 165719422 165719727 -18568935 - AluSx SINE Alu -7 305 1 1233 165 99 48 chr4 165719739 165720012 -18568650 - AluJo SINE Alu -25 287 1 932 164 128 5 chr4 165721086 165721281 -18567381 + MER20B DNA MER1_type 1 219 0 1307 27 27 0 chr4 165721315 165721465 -18567197 - L1PA4 LINE L1 -3 6152 5999 231 296 111 0 chr4 165721552 165721660 -18567002 + L1ME LINE L1 5688 5807 -355 1123 200 0 15 chr4 165721669 165721869 -18566793 - MER8 DNA MER2_type 0 239 43 709 266 97 17 chr4 165722507 165722744 -18565918 - MIR SINE MIR -5 257 2 710 221 154 5 chr4 165722906 165723101 -18565561 + MIR SINE MIR 37 260 -2 512 252 172 0 chr4 165724866 165725017 -18563645 + MER5A DNA MER1_type 11 187 -2 2194 224 127 88 chr4 165725023 165725450 -18563212 - HAL1 LINE L1 -668 1839 1430 2260 56 0 28 chr4 165725450 165725772 -18562890 - AluY SINE Alu 0 314 1 2194 224 127 88 chr4 165725772 165726560 -18562102 - HAL1 LINE L1 -1077 1430 575 1950 189 127 40 chr4 165726581 165727053 -18561609 - MLT2B1 LTR ERVL 0 520 8 2101 125 3 0 chr4 165727059 165727347 -18561315 + AluSx SINE Alu 3 291 -21 607 250 142 34 chr4 165727363 165727659 -18561003 - HAL1 LINE L1 -1945 562 235 1906 188 33 20 chr4 165727711 165728047 -18560615 - MLT1C LTR MaLR 0 467 124 2232 124 3 0 chr4 165728047 165728353 -18560309 - AluSx SINE Alu -5 307 1 1906 188 33 20 chr4 165728353 165728414 -18560248 - MLT1C LTR MaLR -343 124 65 580 179 4 232 chr4 165728698 165728944 -18559718 + LTR8 LTR ERV1 63 243 -448 377 198 112 0 chr4 165728999 165729115 -18559547 + MER20B DNA MER1_type 607 735 -48 932 211 158 53 chr4 165729150 165729492 -18559170 + LTR8A LTR ERV1 348 725 -2 519 200 136 13 chr4 165729582 165729737 -18558925 + MER20B DNA MER1_type 603 776 -7 185 339 66 8 chr4 165729739 165729860 -18558802 + L2 LINE L2 3186 3313 0 1951 141 3 3 chr4 165730353 165730691 -18557971 - AluSx SINE Alu 0 338 1 1115 288 99 5 chr4 165730738 165731120 -18557542 - LTR16A LTR ERVL 0 450 33 271 259 30 53 chr4 165732280 165732311 -18556351 - L1ME3A LINE L1 -249 5921 5891 1884 153 3 7 chr4 165732311 165732612 -18556050 - AluJb SINE Alu -12 300 1 271 259 30 53 chr4 165732612 165732711 -18555951 - L1ME3A LINE L1 -279 5891 5794 427 352 107 33 chr4 165732718 165733443 -18555219 + L2 LINE L2 2470 3254 -18 183 313 48 36 chr4 165733522 165733605 -18555057 + MIR3 SINE MIR 101 184 -24 689 256 68 11 chr4 165734609 165734800 -18553862 - MIR SINE MIR -11 251 50 1803 166 3 34 chr4 165735458 165735778 -18552884 + AluJo SINE Alu 1 310 -2 1040 117 37 6 chr4 165736189 165736351 -18552311 + AluSg/x SINE Alu 143 309 -1 696 192 52 29 chr4 165736352 165736524 -18552138 - MER53 DNA DNA -13 176 1 843 226 111 21 chr4 165736550 165736745 -18551917 + MIR SINE MIR 8 229 -33 1515 250 49 0 chr4 165736745 165737093 -18551569 - MLT1A1 LTR MaLR 0 365 1 843 226 111 21 chr4 165737093 165737131 -18551531 + MIR SINE MIR 229 262 0 180 312 91 0 chr4 165737498 165737575 -18551087 - MIR SINE MIR -84 124 41 470 324 6 35 chr4 165738309 165738482 -18550180 - MIR3 SINE MIR -6 202 35 234 0 0 0 chr4 165738492 165738518 -18550144 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1677 189 4 0 chr4 165738521 165738802 -18549860 - AluJo SINE Alu -30 282 1 895 190 0 0 chr4 165740390 165740548 -18548114 + L1ME1 LINE L1 5829 5986 -180 377 130 0 0 chr4 165840548 165840633 -18448029 + AluSp/q SINE Alu 233 317 0 341 133 67 0 chr4 165840636 165840696 -18447966 - MSTC LTR MaLR -364 64 1 2030 110 10 0 chr4 165840796 165841095 -18447567 - AluSx SINE Alu -10 302 1 1928 112 49 0 chr4 165841467 165841753 -18446909 - AluSg SINE Alu -10 300 1 21 36 0 0 chr4 165842023 165842051 -18446611 + AT_rich Low_complexity Low_complexity 1 28 0 1262 161 45 111 chr4 165842960 165843044 -18445618 + MER4C LTR ERV1 1 89 -376 207 0 0 0 chr4 165843044 165843067 -18445595 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1262 161 45 111 chr4 165843067 165843611 -18445051 + MER4C LTR ERV1 89 462 -3 2243 195 73 29 chr4 165843707 165844255 -18444407 + LTR49 LTR ERV1 1 572 -23 1595 164 20 84 chr4 165844271 165844847 -18443815 + LTR49-int LTR ERV1 12 1452 -4494 706 194 19 31 chr4 165844896 165845056 -18443606 + LTR49-int LTR ERV1 447 604 -5727 683 162 48 72 chr4 165845053 165845220 -18443442 + LTR49-int LTR ERV1 768 930 -5401 * 1734 179 88 0 chr4 165845331 165845638 -18443024 + MSTD LTR MaLR 60 393 -3 8793 19 2 257 chr4 165846117 165847988 -18440674 + SVA Other Other 1 1403 0 392 183 0 52 chr4 165847989 165848104 -18440558 - AluJ/FLAM SINE Alu -236 66 1 3421 100 51 0 chr4 165848903 165849373 -18439289 - MER1A DNA MER1_type -1 528 35 196 295 33 0 chr4 165849753 165849814 -18438848 - L2 LINE L2 -1 3312 3250 292 297 22 0 chr4 165850091 165850182 -18438480 + L2 LINE L2 3217 3309 -4 308 218 109 30 chr4 165850588 165850689 -18437973 - MIR SINE MIR -48 214 106 2812 151 56 56 chr4 165850689 165850840 -18437822 - Tigger1 DNA MER2_type -1850 568 418 1888 150 4 0 chr4 165850840 165851120 -18437542 - AluJb SINE Alu -11 301 21 2812 151 56 56 chr4 165851120 165851133 -18437529 - Tigger1 DNA MER2_type -2000 418 406 252 0 0 0 chr4 165851133 165851161 -18437501 + (ATTG)n Simple_repeat Simple_repeat 4 31 0 1794 107 0 141 chr4 165851161 165851487 -18437175 - AluSx SINE Alu -32 280 1 2812 151 56 56 chr4 165851487 165851888 -18436774 - Tigger1 DNA MER2_type -2010 408 1 259 278 139 95 chr4 165851894 165852187 -18436475 + L2 LINE L2 2858 3178 -135 2374 104 0 3 chr4 165852187 165852486 -18436176 - AluSx SINE Alu -14 298 1 259 278 139 95 chr4 165852486 165852624 -18436038 + L2 LINE L2 3178 3308 -5 473 58 29 0 chr4 165852836 165852905 -18435757 - L1MB7 LINE L1 0 6184 6114 2121 94 0 20 chr4 165852905 165853204 -18435458 + AluSq SINE Alu 20 312 -1 357 250 58 141 chr4 165853231 165853543 -18435119 - L2 LINE L2 -11 3261 2976 261 249 152 5 chr4 165853576 165853689 -18434973 - L1MC/D LINE L1 -458 5663 5607 200 229 42 0 chr4 165853990 165854038 -18434624 + C-rich Low_complexity Low_complexity 1 50 0 939 174 148 48 chr4 165854039 165854269 -18434393 - AluSx SINE Alu -59 253 1 233 351 35 9 chr4 165854714 165854828 -18433834 + L2 LINE L2 2968 3084 -229 930 232 73 114 chr4 165854832 165854964 -18433698 + L2 LINE L2 2626 2762 -551 1709 129 0 12 chr4 165854964 165855205 -18433457 - AluSg SINE Alu -65 245 8 930 232 73 114 chr4 165855205 165855353 -18433309 + L2 LINE L2 2762 2915 -398 2372 147 89 18 chr4 165855353 165855789 -18432873 + MLT1C LTR MaLR 1 467 0 930 232 73 114 chr4 165855789 165855995 -18432667 + L2 LINE L2 2915 3083 -230 2293 97 7 0 chr4 165855995 165856293 -18432369 + AluSc SINE Alu 1 300 -9 930 232 73 114 chr4 165856293 165856515 -18432147 + L2 LINE L2 3083 3313 0 2208 111 10 3 chr4 165856531 165856828 -18431834 + AluSx SINE Alu 1 299 -13 189 0 0 0 chr4 165856828 165856849 -18431813 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 240 35 0 0 chr4 165856848 165856877 -18431785 + (CA)n Simple_repeat Simple_repeat 2 30 0 2293 91 10 10 chr4 165857748 165858055 -18430607 - AluSq SINE Alu -6 307 1 254 293 44 88 chr4 165858157 165858362 -18430300 - L1ME LINE L1 -303 5818 5623 1053 238 87 106 chr4 165858367 165858838 -18429824 + MER77 LTR ERV1 6 467 -138 278 310 26 0 chr4 165860062 165860178 -18428484 + HAL1b LINE L1 1229 1347 -1 810 169 0 90 chr4 165860887 165861064 -18427598 - FRAM SINE Alu -12 164 4 21 36 0 0 chr4 165861132 165861160 -18427502 + AT_rich Low_complexity Low_complexity 1 28 0 228 343 79 14 chr4 165862528 165862668 -18425994 - L2 LINE L2 -238 3034 2886 587 264 129 51 chr4 165862789 165863160 -18425502 + MLT1J1 LTR MaLR 32 431 -15 22 0 0 0 chr4 165864087 165864109 -18424553 + AT_rich Low_complexity Low_complexity 1 22 0 340 277 107 29 chr4 165864142 165864384 -18424278 + L1ME4a LINE L1 5861 6121 0 934 255 63 0 chr4 165864401 165864640 -18424022 - MIR SINE MIR -2 260 7 1287 124 5 11 chr4 165865664 165865849 -18422813 - AluSg/x SINE Alu -17 293 110 29 0 0 0 chr4 165867397 165867426 -18421236 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr4 165868096 165868134 -18420528 + GC_rich Low_complexity Low_complexity 1 38 0 28 0 0 0 chr4 165868419 165868447 -18420215 + GC_rich Low_complexity Low_complexity 1 28 0 472 154 0 0 chr4 165871588 165871666 -18416996 + MLT1D LTR MaLR 85 162 -343 1041 208 60 26 chr4 165871679 165871944 -18416718 - MLT1D LTR MaLR -92 413 140 393 271 74 0 chr4 165871932 165872054 -18416608 + MLT1D LTR MaLR 375 505 0 * 262 236 55 0 chr4 165872589 165872644 -18416018 + MER117 DNA MER1_type 15 72 -125 209 200 0 88 chr4 165873890 165873970 -18414692 + G-rich Low_complexity Low_complexity 3 75 0 1820 155 14 0 chr4 165875038 165875315 -18413347 - AluJo SINE Alu -31 281 1 347 288 177 26 chr4 165877885 165878359 -18410303 - L2 LINE L2 -4 3309 2760 1273 135 0 11 chr4 165880002 165880187 -18408475 + AluSg/x SINE Alu 110 292 -18 21 57 0 0 chr4 165881249 165881284 -18407378 + AT_rich Low_complexity Low_complexity 1 35 0 223 206 286 16 chr4 165881764 165881890 -18406772 + MER5A DNA MER1_type 27 186 -3 1704 165 3 14 chr4 165883490 165883810 -18404852 - AluJo SINE Alu 0 317 1 185 208 42 0 chr4 165884675 165884723 -18403939 + L2 LINE L2 3256 3305 -8 25 0 0 0 chr4 165885545 165885570 -18403092 + AT_rich Low_complexity Low_complexity 1 25 0 1313 146 0 5 chr4 165889792 165890014 -18398648 + AluJb SINE Alu 85 305 0 1834 173 0 0 chr4 165890711 165891006 -18397656 + AluJo SINE Alu 2 296 -16 2618 172 176 65 chr4 165891426 165892248 -18396414 + MER52C LTR ERV1 199 1278 0 1784 125 43 0 chr4 165892860 165893116 -18395546 + AluSq SINE Alu 6 272 -41 32 0 0 0 chr4 165893247 165893279 -18395383 + AT_rich Low_complexity Low_complexity 1 32 0 244 179 0 0 chr4 165893438 165893477 -18395185 - MLT1C LTR MaLR -2 465 427 1129 136 11 5 chr4 165893542 165893726 -18394936 + MLT1C LTR MaLR 14 198 -269 650 209 92 8 chr4 165893723 165893920 -18394742 - MLT1C LTR MaLR -45 422 189 * 1869 154 7 0 chr4 165894014 165894314 -18394348 - AluSx SINE Alu 0 304 3 21 36 0 0 chr4 165897110 165897138 -18391524 + AT_rich Low_complexity Low_complexity 1 28 0 5343 45 8 5 chr4 165897287 165897949 -18390713 - L1PA4 LINE L1 -4 6151 5488 26395 42 3 7 chr4 165898051 165904120 -18384542 + L1PA3 LINE L1 105 6152 -3 10158 70 4 3 chr4 165904980 165906340 -18382322 - HERV17 LTR ERV1 -4836 3790 2430 8884 68 10 18 chr4 165906325 165907587 -18381075 - HERV17 LTR ERV1 -6612 2014 763 * 5189 71 7 17 chr4 165907774 165908488 -18380174 - HERV17 LTR ERV1 -7919 707 1 3240 81 54 39 chr4 165908488 165909005 -18379657 - LTR17 LTR ERV1 0 780 256 560 224 71 0 chr4 165909053 165909223 -18379439 + MER58A DNA MER1_type 42 223 -1 1748 167 29 13 chr4 165909626 165909932 -18378730 - AluJb SINE Alu -1 311 1 3334 145 36 16 chr4 165911464 165912564 -18376098 + L1PA13 LINE L1 4705 5826 -337 2290 101 16 27 chr4 165912810 165913175 -18375487 + L1PA13 LINE L1 5799 6159 -4 195 316 0 18 chr4 165913271 165913328 -18375334 - L2 LINE L2 -7 3306 3251 2119 247 17 34 chr4 165914060 165914873 -18373789 + L1M2 LINE L1 1524 2269 -4838 1809 139 169 21 chr4 165914873 165915246 -18373416 + MSTA LTR MaLR 1 428 0 2119 247 17 34 chr4 165915246 165915608 -18373054 + L1M2 LINE L1 2269 2635 -4472 * 5145 203 79 34 chr4 165915605 165915795 -18372867 + L1M2 LINE L1 4810 4990 -2163 3316 81 0 2 chr4 165915795 165916240 -18372422 - L1PA8 LINE L1 -10 6162 5719 5145 203 79 34 chr4 165916240 165916539 -18372123 + L1M2 LINE L1 4990 5274 -1879 1747 184 0 10 chr4 165916539 165916832 -18371830 + AluJo SINE Alu 1 290 -22 5145 203 79 34 chr4 165916832 165917422 -18371240 + L1M2 LINE L1 5274 5979 -1174 1997 140 14 0 chr4 165917422 165917708 -18370954 + AluSq SINE Alu 1 290 -23 5145 203 79 34 chr4 165917708 165918146 -18370516 + L1M2 LINE L1 5979 6396 -757 2093 157 13 7 chr4 165918138 165918693 -18369969 + L1MA9 LINE L1 5232 6306 -6 * 2093 164 21 21 chr4 165918693 165919122 -18369540 + L1MA9 LINE L1 5881 6312 0 37402 78 7 9 chr4 165919251 165925417 -18363245 + L1PA5 LINE L1 1 6149 -5 1750 232 14 12 chr4 165925547 165925978 -18362684 - MLT1C LTR MaLR -2 465 34 2005 121 18 66 chr4 165926077 165926458 -18362204 + THE1B LTR MaLR 2 364 0 10327 90 4 73 chr4 165926458 165928155 -18360507 + THE1B-int LTR MaLR 1 1580 0 2103 143 22 25 chr4 165928155 165928520 -18360142 + THE1B LTR MaLR 1 364 0 353 176 27 27 chr4 165928520 165928594 -18360068 + MIR3 SINE MIR 107 180 -28 431 351 39 42 chr4 165928974 165929307 -18359355 + L1MA4 LINE L1 1397 1728 -5768 1902 174 10 0 chr4 165929434 165929728 -18358934 + AluSx SINE Alu 1 297 -15 5721 234 45 32 chr4 165929984 165930274 -18358388 + L1MA4 LINE L1 2281 2566 -4999 2270 88 7 0 chr4 165930274 165930559 -18358103 - AluY SINE Alu -24 287 1 5721 234 45 32 chr4 165930559 165931656 -18357006 + L1MA4 LINE L1 2566 3647 -3918 2129 123 3 0 chr4 165931656 165931967 -18356695 + AluSp SINE Alu 1 312 0 5721 234 45 32 chr4 165931967 165933601 -18355061 + L1MA4 LINE L1 3647 5040 -2525 2062 179 25 37 chr4 165933601 165934036 -18354626 + MSTB1 LTR MaLR 1 430 -2 5721 234 45 32 chr4 165934036 165934141 -18354521 + L1MA4 LINE L1 5040 5142 -2423 5513 150 19 19 chr4 165934131 165934969 -18353693 + L1MA4 LINE L1 5951 6787 -932 * 324 0 0 0 chr4 165934969 165935005 -18353657 + (TG)n Simple_repeat Simple_repeat 2 37 0 1589 211 18 0 chr4 165935006 165935286 -18353376 - AluJb SINE Alu -27 285 1 5513 150 19 19 chr4 165935286 165936195 -18352467 + L1MA4 LINE L1 6786 7712 -7 530 67 11 22 chr4 165936321 165936411 -18352251 - L1MB8 LINE L1 -1 6177 6089 652 238 26 11 chr4 165936442 165936631 -18352031 - L1MB7 LINE L1 -82 6102 5911 1173 247 125 8 chr4 165936643 165937027 -18351635 - MLT2B1 LTR ERVL -91 429 1 636 197 94 0 chr4 165937755 165937872 -18350790 + FLAM_C SINE Alu 1 128 -5 1432 194 21 0 chr4 165938571 165938855 -18349807 + LTR10B LTR ERV1 258 547 0 424 278 170 29 chr4 165939988 165940438 -18348224 - MLT1H1 LTR MaLR -39 510 1 3682 119 25 9 chr4 165942716 165943271 -18345391 - LTR6A LTR ERV1 0 564 1 255 271 99 66 chr4 165943301 165943452 -18345210 - MIR3 SINE MIR -23 185 30 2218 114 125 5 chr4 165943571 165943947 -18344715 + MSTA LTR MaLR 8 428 0 2084 197 15 50 chr4 165943951 165944495 -18344167 - L1MB8 LINE L1 -82 6096 5572 2174 120 0 0 chr4 165945335 165945635 -18343027 - AluSg SINE Alu -10 300 1 473 48 0 0 chr4 165946190 165946252 -18342410 - L1PA6 LINE L1 -4 6150 6089 325 169 25 25 chr4 165946530 165946690 -18341972 + (TA)n Simple_repeat Simple_repeat 1 160 0 22 56 0 0 chr4 165946715 165946751 -18341911 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr4 165946943 165946964 -18341698 + AT_rich Low_complexity Low_complexity 1 21 0 216 281 96 74 chr4 165947495 165947630 -18341032 + MIR SINE MIR 2 139 -69 292 287 109 35 chr4 165947815 165948017 -18340645 + MLT1L LTR MaLR 162 378 -237 238 269 87 0 chr4 165948086 165948190 -18340472 + MLT1L LTR MaLR 492 604 -11 32 26 0 0 chr4 165948473 165948512 -18340150 + AT_rich Low_complexity Low_complexity 1 39 0 2030 90 72 0 chr4 165949094 165949373 -18339289 + AluY SINE Alu 1 299 -12 192 171 24 0 chr4 165949503 165949544 -18339118 - L2 LINE L2 -6 3307 3266 360 42 0 0 chr4 165949864 165949912 -18338750 + L1PA3 LINE L1 6105 6152 -3 232 293 60 9 chr4 165950152 165950268 -18338394 + Charlie4 DNA MER1_type 1815 1936 -25 5198 14 0 2 chr4 165950270 165950862 -18337800 + L1PA3 LINE L1 5563 6153 -2 2570 127 5 5 chr4 165951665 165952036 -18336626 - L1PA16 LINE L1 -2 6164 5794 1719 192 109 8 chr4 165952138 165952497 -18336165 - MSTD LTR MaLR -1 395 1 369 318 7 26 chr4 165952761 165952915 -18335747 + L2 LINE L2 2421 2571 -743 2199 116 14 0 chr4 165953071 165953363 -18335299 - AluSq SINE Alu -17 296 1 24 32 0 0 chr4 165954549 165954580 -18334082 + AT_rich Low_complexity Low_complexity 1 31 0 291 284 284 5 chr4 165955119 165955323 -18333339 - MIR SINE MIR 0 262 2 2317 105 0 3 chr4 165955406 165955710 -18332952 + AluSx SINE Alu 1 303 -9 375 284 52 36 chr4 165957604 165957798 -18330864 - MER117 DNA MER1_type 0 197 1 949 321 77 48 chr4 165958311 165958461 -18330201 - L2 LINE L2 -32 3281 3137 2463 86 0 0 chr4 165958461 165958764 -18329898 - AluSx SINE Alu -9 303 1 949 321 77 48 chr4 165958764 165959739 -18328923 - L2 LINE L2 -176 3137 2129 336 262 0 0 chr4 165959763 165959866 -18328796 + (TATATG)n Simple_repeat Simple_repeat 2 104 0 934 101 8 0 chr4 165959867 165959986 -18328676 - FLAM_C SINE Alu -13 120 1 2137 100 21 3 chr4 165961054 165961345 -18327317 - AluY SINE Alu -11 300 5 1053 291 109 3 chr4 165961358 165961716 -18326946 + MLT1I LTR MaLR 10 405 -4 1445 99 18 32 chr4 165961754 165961975 -18326687 - L1PA16 LINE L1 -7 6159 5942 4127 153 42 13 chr4 165962914 165962948 -18325714 - L1MB4 LINE L1 -2 6178 6146 1153 246 94 7 chr4 165962948 165963224 -18325438 - AluJo SINE Alu -2 300 1 4127 153 42 13 chr4 165963224 165963935 -18324727 - L1MB4 LINE L1 -34 6146 5412 241 143 0 0 chr4 165964000 165964035 -18324627 - tRNA-His-CAC tRNA tRNA -39 36 2 4296 194 37 7 chr4 165964064 165965088 -18323574 - L1MB4 LINE L1 -743 5403 4372 1168 353 64 19 chr4 165965138 165965702 -18322960 - L3 LINE CR1 -3 1574 986 21 36 0 0 chr4 165965788 165965816 -18322846 + AT_rich Low_complexity Low_complexity 1 28 0 26 74 0 0 chr4 165966004 165966058 -18322604 + AT_rich Low_complexity Low_complexity 1 54 0 1113 209 41 27 chr4 165966301 165966521 -18322141 - MER58A DNA MER1_type -1 223 1 372 278 53 147 chr4 165966586 165966852 -18321810 - L2 LINE L2 -16 3256 3016 457 328 158 47 chr4 165966876 165967705 -18320957 - L2 LINE L2 -407 2907 1987 6317 185 54 30 chr4 165967706 165969311 -18319351 + L1MA4 LINE L1 1 1639 -4065 820 139 0 0 chr4 165969339 165969454 -18319208 - FLAM_C SINE Alu -27 116 2 325 0 0 0 chr4 165969470 165969505 -18319157 - U2 snRNA snRNA -153 35 1 3920 197 45 21 chr4 165969506 165971098 -18317564 + L1MA4 LINE L1 1629 3270 -3058 * 4392 133 32 11 chr4 165971093 165971877 -18316785 + L1MA4 LINE L1 5384 6200 -282 412 213 32 0 chr4 165971880 165971974 -18316688 + L1MB3 LINE L1 6087 6183 0 27 0 0 0 chr4 165971974 165972001 -18316661 + AT_rich Low_complexity Low_complexity 1 27 0 2702 133 33 26 chr4 165972652 165973081 -18315581 + Tigger2a DNA MER2_type 3 434 0 23 33 0 0 chr4 165973546 165973576 -18315086 + AT_rich Low_complexity Low_complexity 1 30 0 1456 174 60 8 chr4 165973780 165974045 -18314617 + AluJb SINE Alu 31 309 -3 216 246 62 0 chr4 165975792 165975857 -18312805 + L2 LINE L2 2980 3048 -224 1799 158 31 86 chr4 165976435 165976821 -18311841 + MLT1A1 LTR MaLR 1 365 0 25 56 0 42 chr4 165977737 165977809 -18310853 + GC_rich Low_complexity Low_complexity 1 69 0 209 214 0 0 chr4 165978611 165978653 -18310009 - L2 LINE L2 0 3272 3231 7627 137 138 30 chr4 165978792 165980328 -18308334 + pTR5 LTR ERV1 732 2433 -5 275 318 210 11 chr4 165980400 165980576 -18308086 + MIR SINE MIR 52 262 0 1768 126 0 60 chr4 165980901 165981203 -18307459 + AluSx SINE Alu 1 284 -28 1493 204 0 11 chr4 165981372 165981652 -18307010 - AluJo SINE Alu -35 277 1 194 245 0 0 chr4 165982219 165982268 -18306394 - L2 LINE L2 -4 3268 3220 201 74 0 0 chr4 165982423 165982450 -18306212 + (TCCCC)n Simple_repeat Simple_repeat 5 31 0 5208 124 46 10 chr4 165982459 165983287 -18305375 - Tigger4(Zombi) DNA MER2_type -4 2727 1870 624 144 0 0 chr4 165983285 165983375 -18305287 - Tigger4(Zombi) DNA MER2_type -2641 90 1 * 1653 199 90 38 chr4 165983717 165984140 -18304522 - MSTB2 LTR MaLR 0 457 13 345 314 83 48 chr4 165984696 165984864 -18303798 - L1MEd LINE L1 -4991 1128 947 1896 174 0 3 chr4 165984864 165985162 -18303500 - AluJb SINE Alu -15 297 1 345 314 83 48 chr4 165985162 165985245 -18303417 - L1MEd LINE L1 -5172 947 868 7422 99 36 89 chr4 165985564 165986849 -18301813 - THE1B-int LTR MaLR -364 1216 1 2596 122 14 3 chr4 165986849 165987209 -18301453 - THE1B LTR MaLR 0 364 1 542 263 58 17 chr4 165987298 165987538 -18301124 - MER96B DNA MER1_type? -166 251 2 771 134 8 0 chr4 165988327 165988446 -18300216 - Tigger1 DNA MER2_type -86 2332 2213 8251 209 45 7 chr4 165988449 165990019 -18298643 + L1M1 LINE L1 15 1643 -5922 11534 167 24 34 chr4 165990121 165992810 -18295852 + L1M1 LINE L1 3262 5930 -1635 2233 150 78 8 chr4 165992820 165993220 -18295442 - MSTA LTR MaLR 0 428 1 3155 117 7 8 chr4 165993220 165994047 -18294615 + MER50-int LTR ERV1 5733 7196 -9 443 163 35 0 chr4 165994047 165994133 -18294529 + MER50 LTR ERV1 1 89 -645 * 1412 115 5 5 chr4 165994129 165994337 -18294325 + MER50 LTR ERV1 504 711 -23 3678 176 7 3 chr4 165994338 165994958 -18293704 - Tigger1 DNA MER2_type -1789 629 8 32 0 0 0 chr4 165995136 165995168 -18293494 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 165995719 165995740 -18292922 + AT_rich Low_complexity Low_complexity 1 21 0 1728 162 7 30 chr4 165995760 165996056 -18292606 - AluJb SINE Alu -15 297 9 5345 179 87 65 chr4 165996369 165996467 -18292195 + LOR1-int LTR ERV1 2622 2716 -3986 1932 151 3 0 chr4 165996467 165996759 -18291903 - AluSx SINE Alu -19 293 1 5345 179 87 65 chr4 165996759 165996976 -18291686 + LOR1-int LTR ERV1 2716 2927 -3775 3057 79 31 0 chr4 165996976 165997367 -18291295 + L1PA10 LINE L1 5763 6165 -3 5345 179 87 65 chr4 165997367 165999163 -18289499 + LOR1-int LTR ERV1 2927 5174 -1528 678 151 24 32 chr4 165999170 165999283 -18289379 + LTR8A LTR ERV1 1 114 -613 2996 86 95 0 chr4 165999283 165999692 -18288970 + LTR7 LTR ERV1 1 448 -2 678 151 24 32 chr4 165999692 165999704 -18288958 + LTR8A LTR ERV1 114 125 -602 20094 97 14 23 chr4 165999704 166002706 -18285956 + HERVH LTR ERV1 11 2985 -4728 897 155 20 0 chr4 166002702 166002850 -18285812 + HERVH LTR ERV1 3140 3290 -4423 * 3390 116 4 8 chr4 166002840 166003351 -18285311 + HERVH LTR ERV1 3492 4000 -3713 * 4415 141 1 1 chr4 166003346 166004007 -18284655 + HERVH LTR ERV1 4489 5149 -2564 1362 124 23 14 chr4 166004008 166004226 -18284436 + HERVH LTR ERV1 5600 5819 -1894 * 2428 105 45 13 chr4 166004224 166004604 -18284058 + HERVH LTR ERV1 7322 7713 0 3035 81 95 0 chr4 166004604 166005013 -18283649 + LTR7 LTR ERV1 1 448 -2 2349 191 27 89 chr4 166005015 166005647 -18283015 + LTR8 LTR ERV1 99 691 0 8234 147 53 19 chr4 166005647 166007184 -18281478 + LTR49-int LTR ERV1 4742 6331 0 2066 204 77 31 chr4 166007184 166007729 -18280933 + LTR49 LTR ERV1 1 570 -25 2284 163 14 6 chr4 166007888 166008249 -18280413 + THE1B LTR MaLR 1 364 0 6855 112 14 1 chr4 166008250 166009208 -18279454 + THE1B-int LTR MaLR 2 971 -609 4184 64 2 0 chr4 166009208 166009722 -18278940 - HERVK14C LTR ERVK -1769 5648 5134 4622 104 48 153 chr4 166009722 166010645 -18278017 - LTR12 LTR ERV1 0 826 1 1005 229 31 45 chr4 166010724 166011016 -18277646 - pTR5 LTR ERV1 -1410 1028 741 * 40054 80 2 3 chr4 166011014 166016155 -18272507 - HERVK14C LTR ERVK -2280 5137 1 4998 65 3 0 chr4 166016155 166016740 -18271922 - LTR14C LTR ERVK 0 587 1 3855 183 9 11 chr4 166016740 166017390 -18271272 - L1PBb LINE L1 -5544 660 12 * 6047 230 43 32 chr4 166017362 166018985 -18269677 - L1PBa LINE L1 -5220 1643 3 885 292 31 0 chr4 166019007 166019267 -18269395 - PRIMA41-int LTR ERV1 -420 7336 7069 3211 236 75 29 chr4 166019285 166020173 -18268489 - HERVL32 LTR ERVL -2489 929 1 2337 152 98 7 chr4 166020173 166020593 -18268069 - LTR32 LTR ERVL 0 471 14 218 371 114 13 chr4 166020955 166021192 -18267470 + MIR SINE MIR 2 262 0 180 264 19 0 chr4 166021364 166021417 -18267245 + MIR3 SINE MIR 116 169 -39 619 318 89 36 chr4 166023316 166023675 -18264987 + L3 LINE CR1 448 825 -752 296 48 24 0 chr4 166023678 166023720 -18264942 + (TA)n Simple_repeat Simple_repeat 2 44 0 241 188 125 0 chr4 166023743 166023791 -18264871 + LTR54 LTR ERV1 33 86 -424 533 200 53 147 chr4 166023841 166024066 -18264596 + MER57A LTR ERV1 200 403 0 2138 103 3 7 chr4 166024693 166025005 -18263657 + AluSx SINE Alu 1 311 0 350 323 65 39 chr4 166025549 166025778 -18262884 + L3 LINE CR1 880 1114 -463 335 252 164 6 chr4 166025778 166025937 -18262725 - L1ME4a LINE L1 -3 6118 5935 454 315 173 27 chr4 166026189 166026554 -18262108 + L3 LINE CR1 1088 1505 -72 2713 52 9 3 chr4 166026589 166026938 -18261724 - L1PA5 LINE L1 0 6154 5820 2649 90 6 6 chr4 166027028 166027385 -18261277 - L1PB1 LINE L1 -3 6148 5792 2275 90 0 30 chr4 166027556 166027857 -18260805 - AluSq SINE Alu -18 295 4 189 107 0 0 chr4 166028149 166028177 -18260485 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 491 267 17 8 chr4 166028744 166028864 -18259798 + L2 LINE L2 3193 3313 0 5366 156 30 23 chr4 166029911 166030056 -18258606 - L1MA9 LINE L1 -2 7729 7587 306 0 0 0 chr4 166030056 166030090 -18258572 + (TG)n Simple_repeat Simple_repeat 1 34 0 5366 156 30 23 chr4 166030090 166030455 -18258207 - L1MA9 LINE L1 -144 7587 7226 273 57 0 0 chr4 166030455 166030490 -18258172 + (TCCA)n Simple_repeat Simple_repeat 3 37 0 186 43 0 0 chr4 166030491 166030514 -18258148 + (TC)n Simple_repeat Simple_repeat 2 24 0 5366 156 30 23 chr4 166030514 166031160 -18257502 - L1MA9 LINE L1 -504 7227 6560 669 111 0 10 chr4 166031163 166031262 -18257400 + MER4A LTR ERV1 1 98 -566 1793 135 32 19 chr4 166031262 166031603 -18257059 + MER4A LTR ERV1 261 664 0 12582 218 58 30 chr4 166031606 166034888 -18253774 - L1MA9 LINE L1 -1008 6557 3122 1630 203 0 20 chr4 166034888 166035188 -18253474 - AluJo SINE Alu -18 294 1 12582 218 58 30 chr4 166035188 166036204 -18252458 - L1MA9 LINE L1 -4443 3122 2136 1877 137 9 22 chr4 166036204 166036554 -18252108 - MER4A LTR ERV1 0 664 261 531 143 20 20 chr4 166036554 166036652 -18252010 - MER4A LTR ERV1 -566 98 1 790 317 27 50 chr4 166036652 166036878 -18251784 - L1M2a LINE L1 -5124 2044 1814 3152 48 3 8 chr4 166036878 166037252 -18251410 - L1PA5 LINE L1 -2 6152 5781 790 317 27 50 chr4 166037252 166037548 -18251114 - L1M2a LINE L1 -5354 1814 1534 8684 32 7 2 chr4 166038414 166040181 -18248481 - L1PA3 LINE L1 -3 6152 4381 24 53 0 0 chr4 166040255 166040293 -18248369 + AT_rich Low_complexity Low_complexity 1 38 0 230 269 164 8 chr4 166040707 166040841 -18247821 - L1ME4a LINE L1 -1 6120 5966 1246 55 0 0 chr4 166040855 166041001 -18247661 - L1MA1 LINE L1 0 6302 6157 6170 161 19 2 chr4 166041153 166043002 -18245660 - L1PB1 LINE L1 -2 6865 4983 2808 172 89 0 chr4 166042983 166043513 -18245149 - L1PB1 LINE L1 -6286 577 1 * 460 306 27 31 chr4 166043525 166043747 -18244915 - L1ME4a LINE L1 -239 5882 5662 350 203 141 39 chr4 166043844 166043972 -18244690 - L1MC5 LINE L1 -184 7777 7637 433 299 7 7 chr4 166044476 166044623 -18244039 - L1ME LINE L1 -374 5747 5601 197 315 63 27 chr4 166045202 166045313 -18243349 + L2 LINE L2 2596 2710 -604 319 226 38 85 chr4 166045879 166045985 -18242677 - MIR SINE MIR -2 260 160 431 316 32 43 chr4 166046843 166047030 -18241632 + MIR SINE MIR 7 191 -71 2125 122 0 3 chr4 166047145 166047441 -18241221 - AluSq SINE Alu -18 295 1 2131 125 0 0 chr4 166047451 166047754 -18240908 - AluSc SINE Alu -6 303 1 1968 109 4 0 chr4 166047826 166048093 -18240569 - AluSc SINE Alu -6 303 36 30 27 0 0 chr4 166048334 166048371 -18240291 + AT_rich Low_complexity Low_complexity 1 37 0 9698 59 20 89 chr4 166048502 166049990 -18238672 - SVA Other Other -1 1385 1 1692 191 77 11 chr4 166051186 166051537 -18237125 - MLT1A2 LTR MaLR 0 374 1 214 258 133 42 chr4 166053907 166054027 -18234635 - L2 LINE L2 -214 3058 2928 306 106 0 0 chr4 166054292 166054339 -18234323 + (TG)n Simple_repeat Simple_repeat 1 47 0 2113 125 10 54 chr4 166054427 166054647 -18234015 - THE1C LTR MaLR 0 375 177 2044 128 0 0 chr4 166054647 166054972 -18233690 + AluSc SINE Alu 1 325 0 2113 125 10 54 chr4 166054972 166055142 -18233520 - THE1C LTR MaLR -198 177 1 8939 200 54 17 chr4 166055331 166056041 -18232621 - L1MA10 LINE L1 -2 6568 5886 2395 58 10 16 chr4 166056041 166056353 -18232309 - AluY SINE Alu -1 310 1 8939 200 54 17 chr4 166056353 166058913 -18229749 - L1MA10 LINE L1 -684 5886 3179 2347 104 125 8 chr4 166058919 166059302 -18229360 + MSTA LTR MaLR 1 428 0 3704 193 238 18 chr4 166059304 166060313 -18228349 + MSTA-int LTR MaLR 3 1233 -347 2158 264 63 26 chr4 166060315 166062559 -18226103 - L1MA10 LINE L1 -3369 3013 848 956 309 32 40 chr4 166062619 166063023 -18225639 - L1MA10 LINE L1 -5739 574 174 282 29 0 0 chr4 166063122 166063157 -18225505 + (CA)n Simple_repeat Simple_repeat 2 36 0 1676 202 25 8 chr4 166063173 166063333 -18225329 - MLT2D LTR ERVL -51 363 207 2180 121 0 19 chr4 166063333 166063647 -18225015 - AluSx SINE Alu -4 308 1 1676 202 25 8 chr4 166063647 166063843 -18224819 - MLT2D LTR ERVL -207 207 1 193 379 87 6 chr4 166064009 166064170 -18224492 - L2 LINE L2 -437 2877 2704 183 263 0 0 chr4 166065608 166065646 -18223016 - L2 LINE L2 -6 3266 3229 312 281 62 31 chr4 166065752 166065912 -18222750 - MIR SINE MIR -41 221 57 192 77 0 0 chr4 166066539 166066565 -18222097 + (TG)n Simple_repeat Simple_repeat 2 27 0 2421 187 14 10 chr4 166066868 166067387 -18221275 - L1MA7 LINE L1 -13 6514 5994 4989 160 50 4 chr4 166067389 166068704 -18219958 - L1MA7 LINE L1 -635 5913 4535 2444 244 95 35 chr4 166068689 166069049 -18219613 - L1MA7 LINE L1 -3652 2730 2393 * 1786 167 27 6 chr4 166069049 166069385 -18219277 + MER2 DNA MER2_type 2 344 0 2444 244 95 35 chr4 166069385 166070877 -18217785 - L1MA7 LINE L1 -3989 2393 911 534 344 35 40 chr4 166072294 166072384 -18216278 - L1MA7 LINE L1 -5710 603 514 1692 192 17 17 chr4 166072384 166072681 -18215981 - AluJo SINE Alu -15 297 1 534 344 35 40 chr4 166072681 166073018 -18215644 - L1MA7 LINE L1 -5799 514 178 2033 92 41 10 chr4 166073045 166073359 -18215303 - LTR17 LTR ERV1 -456 324 1 2197 65 3 3 chr4 166073359 166073651 -18215011 - HERV17 LTR ERV1 0 8626 8335 304 26 0 0 chr4 166073641 166073680 -18214982 - HERV17 LTR ERV1 -1078 7548 7510 * 1166 68 6 0 chr4 166073676 166073837 -18214825 - HERV17 LTR ERV1 -1479 7147 6986 * 16558 50 6 1 chr4 166073829 166075929 -18212733 - HERV17 LTR ERV1 -2724 5902 3791 1293 257 50 5 chr4 166076076 166076477 -18212185 + L2 LINE L2 2485 2903 -411 317 261 0 0 chr4 166076477 166076546 -18212116 + L2 LINE L2 3244 3312 -1 2254 120 0 0 chr4 166076672 166076981 -18211681 - AluSc SINE Alu 0 309 1 201 340 62 0 chr4 166077274 166077371 -18211291 - L3 LINE CR1 -146 1431 1329 273 351 127 40 chr4 166078932 166079430 -18209232 - L2 LINE L2 -566 2748 2208 224 183 256 37 chr4 166079457 166079539 -18209123 + L2 LINE L2 3209 3308 -5 740 161 98 7 chr4 166081427 166081570 -18207092 - FRAM SINE Alu -21 155 1 435 196 0 65 chr4 166083186 166083278 -18205384 + MER58 DNA MER1_type 1 86 -129 * 1771 124 62 3 chr4 166083276 166083583 -18205079 - Tigger2 DNA MER2_type -114 2604 2280 372 191 0 0 chr4 166083582 166083650 -18205012 - Tigger2 DNA MER2_type -2649 69 2 * 265 240 52 94 chr4 166084102 166084198 -18204464 - MIR SINE MIR -83 125 34 23 0 0 0 chr4 166084986 166085009 -18203653 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr4 166085408 166085437 -18203225 + AT_rich Low_complexity Low_complexity 1 29 0 318 50 0 0 chr4 166085979 166086019 -18202643 + (TG)n Simple_repeat Simple_repeat 1 40 0 1974 199 104 17 chr4 166086033 166086496 -18202166 + MLT1D LTR MaLR 1 503 -2 469 184 25 148 chr4 166086506 166086750 -18201912 - Charlie4 DNA MER1_type -32 1929 1716 970 209 74 4 chr4 166087083 166087341 -18201321 - Charlie4 DNA MER1_type -1680 281 6 1742 186 26 6 chr4 166087748 166088097 -18200565 + MLT1A1 LTR MaLR 4 359 -6 1771 159 54 6 chr4 166089607 166089941 -18198721 + MSTB LTR MaLR 1 350 -76 23 0 0 0 chr4 166089941 166089964 -18198698 + AT_rich Low_complexity Low_complexity 1 23 0 231 160 0 0 chr4 166090074 166090124 -18198538 - Alu SINE Alu 0 308 259 648 11 0 33 chr4 166090130 166090222 -18198440 + (TTTTA)n Simple_repeat Simple_repeat 4 92 0 8887 24 0 0 chr4 166090222 166092024 -18196638 - L1PA3 LINE L1 -16 6139 4338 1654 25 0 0 chr4 166092024 166092225 -18196437 + L1PA3 LINE L1 4138 4338 -1808 385 166 2 27 chr4 166092225 166092310 -18196352 + MSTB1 LTR MaLR 313 419 0 242 300 20 40 chr4 166092694 166092794 -18195868 - MIR SINE MIR -6 256 159 289 335 77 22 chr4 166092858 166093040 -18195622 + MIR SINE MIR 61 252 -10 318 347 17 17 chr4 166094058 166094234 -18194428 - MER5A DNA MER1_type 0 189 14 1313 105 5 0 chr4 166094830 166095021 -18193641 - L1PA14 LINE L1 -14 6147 5956 622 241 118 5 chr4 166095105 166095308 -18193354 - MLT2E LTR ERVL 0 628 403 24976 65 10 4 chr4 166097223 166100704 -18187958 - L1P LINE L1 -2632 3514 13 202 191 21 0 chr4 166101481 166101528 -18187134 - L2 LINE L2 0 3313 3266 2821 139 67 14 chr4 166101961 166102480 -18186182 + LTR10A LTR ERV1 1 547 -62 241 307 114 7 chr4 166104145 166104285 -18184377 + L2 LINE L2 3156 3310 -3 280 196 0 0 chr4 166104567 166104618 -18184044 + U5 snRNA snRNA 1 51 -65 182 114 0 23 chr4 166104618 166104662 -18184000 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 334 274 117 65 chr4 166105383 166105734 -18182928 - HAL1b LINE L1 -908 440 72 292 263 112 13 chr4 166106634 166106786 -18181876 + MER46C DNA MER2_type 127 293 -45 22 35 0 0 chr4 166107617 166107646 -18181016 + AT_rich Low_complexity Low_complexity 1 29 0 1772 136 38 11 chr4 166108030 166108317 -18180345 + AluSx SINE Alu 1 295 -17 30 45 0 0 chr4 166108662 166108706 -18179956 + AT_rich Low_complexity Low_complexity 1 44 0 246 277 277 9 chr4 166108912 166109024 -18179638 - MIR SINE MIR -51 211 70 1951 114 6 49 chr4 166109413 166109738 -18178924 - AluSx SINE Alu -1 311 1 999 238 123 137 chr4 166109745 166110460 -18178202 + L2 LINE L2 1329 2033 -1281 378 291 46 51 chr4 166110624 166110861 -18177801 - L1ME3A LINE L1 -223 5947 5712 815 249 23 0 chr4 166111417 166111590 -18177072 - MER45A DNA AcHobo 0 178 2 261 0 0 0 chr4 166111744 166111773 -18176889 + (T)n Simple_repeat Simple_repeat 1 29 0 2144 71 34 0 chr4 166111929 166112196 -18176466 - AluY SINE Alu -13 298 23 2503 124 26 64 chr4 166112196 166112695 -18175967 + LTR19A LTR ERV1 7 486 0 29 28 0 0 chr4 166112977 166113013 -18175649 + AT_rich Low_complexity Low_complexity 1 36 0 418 94 82 12 chr4 166113022 166113107 -18175555 - MER53 DNA DNA -12 177 87 2228 107 0 3 chr4 166113164 166113463 -18175199 + AluY SINE Alu 3 300 -11 391 115 0 0 chr4 166113468 166113529 -18175133 + MER53 DNA DNA 129 189 0 1050 98 0 0 chr4 166113711 166113844 -18174818 - AluSq/x SINE Alu -180 133 1 216 0 0 0 chr4 166114955 166114979 -18173683 + (TG)n Simple_repeat Simple_repeat 1 24 0 1589 158 8 4 chr4 166118071 166118318 -18170344 - AluJo SINE Alu -26 286 39 2304 67 11 3 chr4 166118610 166118922 -18169740 + AluSp SINE Alu 2 315 0 435 184 80 72 chr4 166119921 166120046 -18168616 + MER106B DNA MER1_type 26 151 -908 22 0 0 0 chr4 166120061 166120083 -18168579 + AT_rich Low_complexity Low_complexity 1 22 0 406 276 199 59 chr4 166120209 166120531 -18168131 - MLT1J LTR MaLR -144 367 1 22 0 0 0 chr4 166121098 166121120 -18167542 + AT_rich Low_complexity Low_complexity 1 22 0 1637 206 37 23 chr4 166121221 166121570 -18167092 - MLT1A1 LTR MaLR -2 363 10 584 332 66 19 chr4 166121700 166122077 -18166585 + LTR16C LTR ERVL 90 484 -7 312 174 14 14 chr4 166123587 166123656 -18165006 - L1MB8 LINE L1 -2 6176 6108 * 4288 144 31 67 chr4 166123638 166124566 -18164096 + L1PB4 LINE L1 5275 6303 0 691 276 9 18 chr4 166124563 166124791 -18163871 - L1MB8 LINE L1 -54 6124 5899 * 1585 191 93 5 chr4 166124828 166125206 -18163456 - L1MB5 LINE L1 -233 5941 5531 729 125 0 27 chr4 166126314 166126426 -18162236 + AluSg/x SINE Alu 187 295 -17 1977 354 64 20 chr4 166126460 166127733 -18160929 + ERVL LTR ERVL 2677 4005 -1759 4607 127 12 28 chr4 166128302 166129057 -18159605 + L1MA3 LINE L1 1752 2494 -5071 * 14140 163 20 13 chr4 166129055 166132902 -18155760 + L1MA3 LINE L1 3846 7724 0 620 354 12 29 chr4 166133435 166133675 -18154987 + MIR SINE MIR 15 250 -12 236 300 10 40 chr4 166135440 166135540 -18153122 - MIR3 SINE MIR -9 199 103 557 286 130 38 chr4 166135742 166135948 -18152714 + L2 LINE L2 2586 2822 -492 2184 158 18 23 chr4 166135948 166136340 -18152322 + MLT1B LTR MaLR 1 390 0 557 286 130 38 chr4 166136340 166136395 -18152267 + L2 LINE L2 2822 2871 -443 363 305 0 66 chr4 166136470 166136621 -18152041 + L2 LINE L2 2930 3070 -243 254 362 71 0 chr4 166137160 166137301 -18151361 + MIR SINE MIR 106 256 -6 1682 231 15 50 chr4 166139867 166140344 -18148318 + MER31B LTR ERV1 7 466 0 583 236 16 0 chr4 166140455 166140582 -18148080 + MER31B-int LTR ERV1 45 173 -4763 2077 129 10 3 chr4 166140618 166140921 -18147741 - AluSq SINE Alu 0 313 9 2042 165 36 14 chr4 166140921 166141285 -18147377 + MSTB LTR MaLR 55 426 0 2686 160 4 8 chr4 166141317 166141785 -18146877 + L1PA16 LINE L1 5695 6160 -6 323 88 0 35 chr4 166141785 166141837 -18146825 + L1MA10 LINE L1 6279 6333 -1 425 120 53 0 chr4 166142015 166142090 -18146572 + MER31B-int LTR ERV1 3095 3173 -1763 * 756 184 76 27 chr4 166142089 166142274 -18146388 + MER31B-int LTR ERV1 3381 3574 -1362 1238 235 32 6 chr4 166142548 166142863 -18145799 - MER67D LTR ERV1 0 514 192 2128 59 92 0 chr4 166142897 166143169 -18145493 + AluY SINE Alu 1 297 -14 680 173 56 33 chr4 166143174 166143393 -18145269 - MER67D LTR ERV1 -359 155 1 15545 63 11 3 chr4 166143897 166146364 -18142298 + L1P2 LINE L1 3293 5775 -379 17695 56 1 2 chr4 166146470 166148622 -18140040 - HERV17 LTR ERV1 -4046 4580 2430 7117 64 12 22 chr4 166148607 166149579 -18139083 - HERV17 LTR ERV1 -6612 2014 1052 * 5126 203 52 73 chr4 166149683 166151080 -18137582 + MER31B-int LTR ERV1 3550 4916 -20 1850 192 12 69 chr4 166151080 166151574 -18137088 + MER31B LTR ERV1 1 466 0 288 79 0 0 chr4 166151798 166151836 -18136826 + MER31-int LTR ERV1 4873 4910 -3210 21 36 0 0 chr4 166152821 166152849 -18135813 + AT_rich Low_complexity Low_complexity 1 28 0 18731 37 1 4 chr4 166152998 166156913 -18131749 - L1PA4 LINE L1 -4 6151 2266 187 338 13 52 chr4 166157176 166157253 -18131409 - L2 LINE L2 -2 3311 3238 789 262 42 5 chr4 166157713 166157904 -18130758 + MER119 DNA MER1_type 36 233 -350 25 51 0 0 chr4 166158589 166158628 -18130034 + AT_rich Low_complexity Low_complexity 1 39 0 21 57 0 0 chr4 166158742 166158777 -18129885 + AT_rich Low_complexity Low_complexity 1 35 0 224 288 62 34 chr4 166159282 166159428 -18129234 + MIR SINE MIR 11 160 -102 13785 123 19 16 chr4 166159573 166161826 -18126836 + L1P LINE L1 11 2271 -3875 883 368 88 24 chr4 166162755 166163076 -18125586 + L3 LINE CR1 334 633 -944 1865 172 0 7 chr4 166163076 166163379 -18125283 + AluJb SINE Alu 1 301 -11 883 368 88 24 chr4 166163379 166163894 -18124768 + L3 LINE CR1 633 1224 -353 1530 182 44 14 chr4 166164009 166164306 -18124356 + AluJo SINE Alu 1 306 -6 2092 100 0 42 chr4 166164362 166164671 -18123991 + AluY SINE Alu 1 296 -15 576 114 0 0 chr4 166165130 166165218 -18123444 - L1MA10 LINE L1 -234 5934 5847 * 1631 168 30 80 chr4 166165216 166165656 -18123006 + L1MA10 LINE L1 5914 6331 -3 21 36 0 0 chr4 166167187 166167215 -18121447 + AT_rich Low_complexity Low_complexity 1 28 0 1089 106 0 17 chr4 166167416 166167596 -18121066 + L1MA7 LINE L1 5731 5907 -384 2110 114 47 0 chr4 166167597 166167896 -18120766 + AluSq SINE Alu 1 313 0 1489 102 0 5 chr4 166168049 166168264 -18120398 + L1PA6 LINE L1 5941 6154 0 1293 291 72 70 chr4 166168379 166169381 -18119281 + L2 LINE L2 2298 3312 -1 2238 126 33 8 chr4 166169388 166169754 -18118908 - THE1C LTR MaLR 0 375 1 328 297 117 0 chr4 166170070 166170181 -18118481 + MIR SINE MIR 1 124 -138 3678 155 12 15 chr4 166170376 166171058 -18117604 - L1MA8 LINE L1 -2 6289 5610 327 280 37 19 chr4 166171075 166171182 -18117480 + MIR SINE MIR 145 253 -9 22 35 0 0 chr4 166171715 166171744 -18116918 + AT_rich Low_complexity Low_complexity 1 29 0 387 331 11 34 chr4 166171995 166172173 -18116489 + L1ME3A LINE L1 5992 6165 -5 23 0 0 0 chr4 166173205 166173228 -18115434 + AT_rich Low_complexity Low_complexity 1 23 0 217 206 15 15 chr4 166173235 166173303 -18115359 + GA-rich Low_complexity Low_complexity 3 70 0 22 0 0 0 chr4 166173552 166173574 -18115088 + AT_rich Low_complexity Low_complexity 1 22 0 342 268 72 33 chr4 166173998 166174151 -18114511 + L3 LINE CR1 1335 1493 -84 21 57 0 0 chr4 166174434 166174469 -18114193 + AT_rich Low_complexity Low_complexity 1 35 0 186 133 0 0 chr4 166174531 166174561 -18114101 + (TA)n Simple_repeat Simple_repeat 2 31 0 212 330 55 92 chr4 166174837 166175110 -18113552 - L2 LINE L2 -56 3216 2954 303 177 25 0 chr4 166175846 166175925 -18112737 - L1MA5 LINE L1 0 6300 6220 1082 199 0 0 chr4 166176033 166176224 -18112438 + AluJb SINE Alu 116 306 -6 904 125 56 12 chr4 166176404 166176564 -18112098 - THE1C LTR MaLR -208 167 1 303 101 14 14 chr4 166177237 166177306 -18111356 + L1MA7 LINE L1 6218 6286 -5 3012 123 65 14 chr4 166177992 166178512 -18110150 + LTR10A LTR ERV1 1 547 -62 454 252 150 0 chr4 166179146 166179293 -18109369 - MIR SINE MIR -12 250 82 23 33 0 0 chr4 166179294 166179324 -18109338 + AT_rich Low_complexity Low_complexity 1 30 0 4894 112 19 17 chr4 166179325 166179776 -18108886 - L1PB4 LINE L1 -14 6142 5687 2105 82 71 7 chr4 166179776 166180058 -18108604 - AluSc SINE Alu -9 300 1 4894 112 19 17 chr4 166180058 166180426 -18108236 - L1PB4 LINE L1 -469 5687 5321 3501 124 23 8 chr4 166180433 166180950 -18107712 + MER1A DNA MER1_type 3 527 0 259 316 259 0 chr4 166181011 166181150 -18107512 - MER5B DNA MER1_type -1 177 3 22 0 0 0 chr4 166181477 166181499 -18107163 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 166182592 166182613 -18106049 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr4 166183273 166183305 -18105357 + AT_rich Low_complexity Low_complexity 1 32 0 1498 205 33 49 chr4 166183480 166183645 -18105017 + MER67C LTR ERV1 3 169 -345 2352 86 0 3 chr4 166183645 166183947 -18104715 + AluY SINE Alu 1 301 -10 1498 205 33 49 chr4 166183947 166184308 -18104354 + MER67C LTR ERV1 169 505 -9 356 210 5 88 chr4 166184341 166184527 -18104135 - L1MB8 LINE L1 -1 6177 6000 333 0 0 0 chr4 166184894 166184931 -18103731 + (TG)n Simple_repeat Simple_repeat 1 37 0 216 0 0 0 chr4 166184930 166184954 -18103708 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 253 188 0 14 chr4 166185176 166185245 -18103417 - L1MA8 LINE L1 -8 6283 6216 * 652 168 9 18 chr4 166185235 166185384 -18103278 - L1MA8 LINE L1 -27 6273 6113 4152 73 34 2 chr4 166185611 166186170 -18102492 - LTR19B LTR ERV1 -3 577 1 368 337 73 75 chr4 166186285 166186775 -18101887 + L1MEd LINE L1 68 556 -5563 420 307 12 67 chr4 166186894 166187148 -18101514 + L1MEd LINE L1 596 835 -5284 759 215 79 56 chr4 166188663 166188877 -18099785 - MER20 DNA MER1_type 0 219 1 604 296 84 0 chr4 166189188 166189391 -18099271 + MIR SINE MIR 17 236 -26 2101 182 44 25 chr4 166189801 166190278 -18098384 - MER66B LTR ERV1 0 486 1 456 110 82 0 chr4 166190292 166190365 -18098297 - MADE1 DNA Mariner 0 80 2 1596 178 36 0 chr4 166191131 166191412 -18097250 - AluJb SINE Alu -5 307 17 2318 104 0 0 chr4 166192590 166192888 -18095774 + AluSx SINE Alu 1 298 -14 6944 65 0 0 chr4 166193273 166194423 -18094239 - L1PA5 LINE L1 0 6154 5002 * 7769 20 2 0 chr4 166194420 166195619 -18093043 - L1PA3 LINE L1 -2 6153 4954 12247 26 0 3 chr4 166195621 166197238 -18091424 + L1P1 LINE L1 3875 5487 -668 10884 65 4 4 chr4 166197346 166198878 -18089784 - L1PA3 LINE L1 -1577 4569 3038 * 34578 78 17 8 chr4 166198862 166203827 -18084835 - L1PA5 LINE L1 -1129 5017 11 21 36 0 0 chr4 166205361 166205389 -18083273 + AT_rich Low_complexity Low_complexity 1 28 0 2219 106 0 3 chr4 166206015 166206298 -18082364 - AluSg SINE Alu -28 282 1 2595 199 28 29 chr4 166206905 166207524 -18081138 - L1MB8 LINE L1 -1 6177 5560 270 329 73 22 chr4 166209044 166209181 -18079481 + MIR SINE MIR 21 164 -98 919 193 0 73 chr4 166209296 166209529 -18079133 + MER20 DNA MER1_type 1 216 -3 375 278 60 18 chr4 166209791 166209951 -18078711 + MIR SINE MIR 7 164 -66 2089 127 3 3 chr4 166209965 166210265 -18078397 - AluSx SINE Alu -1 311 12 2081 122 17 3 chr4 166211113 166211408 -18077254 + AluSp SINE Alu 2 300 -13 940 205 12 0 chr4 166211814 166211985 -18076677 - FAM SINE Alu -2 173 1 183 100 0 0 chr4 166212740 166212770 -18075892 + (GTATG)n Simple_repeat Simple_repeat 3 32 0 492 363 101 9 chr4 166212927 166212993 -18075669 + L1M2 LINE L1 10 69 -6780 1920 111 83 46 chr4 166212993 166213344 -18075318 + THE1B LTR MaLR 1 364 0 492 363 101 9 chr4 166213344 166213704 -18074958 + L1M2 LINE L1 69 475 -6374 331 322 51 45 chr4 166213886 166214063 -18074599 + L1M2 LINE L1 779 956 -5893 485 351 47 66 chr4 166214513 166214832 -18073830 + L1M2 LINE L1 796 1108 -5741 416 227 0 0 chr4 166214858 166214946 -18073716 + L1PA15-16 LINE L1 1472 1559 -5290 * 12319 220 29 17 chr4 166214936 166219473 -18069189 + L1P5 LINE L1 1336 6033 -826 1589 162 23 36 chr4 166219473 166219775 -18068887 + AluJb SINE Alu 1 298 -14 12319 220 29 17 chr4 166219775 166219925 -18068737 + L1P5 LINE L1 6033 6180 -679 5608 126 15 52 chr4 166219936 166221061 -18067601 - L1PA13 LINE L1 -7 6156 5044 2374 77 3 10 chr4 166221061 166221374 -18067288 - AluY SINE Alu 0 311 1 5608 126 15 52 chr4 166221374 166221404 -18067258 - L1PA13 LINE L1 -1119 5044 5014 8730 169 13 34 chr4 166221405 166222441 -18066221 - L1 LINE L1 -2354 5211 4154 2068 88 3 42 chr4 166222441 166222726 -18065936 - AluY SINE Alu -26 285 12 8730 169 13 34 chr4 166222726 166224978 -18063684 - L1 LINE L1 -3411 4154 1987 2344 202 21 6 chr4 166224974 166225455 -18063207 - L1 LINE L1 -5973 1592 1105 * 525 202 40 8 chr4 166225451 166225575 -18063087 - L1 LINE L1 -7430 135 8 * 26 0 0 0 chr4 166226051 166226077 -18062585 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr4 166226365 166226395 -18062267 + AT_rich Low_complexity Low_complexity 1 30 0 1818 171 8 52 chr4 166228584 166228879 -18059783 - MLT1C LTR MaLR 0 467 191 2255 81 7 0 chr4 166228879 166229162 -18059500 - AluY SINE Alu -26 285 1 1818 171 8 52 chr4 166229162 166229253 -18059409 - MLT1C LTR MaLR -276 191 98 1306 302 55 27 chr4 166229357 166229906 -18058756 - L2 LINE L2 -406 2908 2345 1858 146 19 33 chr4 166232045 166232408 -18056254 - MER46B DNA MER2_type -1 235 3 28 61 0 0 chr4 166232552 166232601 -18056061 + AT_rich Low_complexity Low_complexity 1 49 0 852 257 96 5 chr4 166236023 166236241 -18052421 + MIR SINE MIR 1 238 -24 183 100 0 0 chr4 166236656 166236686 -18051976 + (CA)n Simple_repeat Simple_repeat 2 31 0 834 245 20 5 chr4 166237861 166238061 -18050601 - MER20 DNA MER1_type -16 203 1 343 270 70 0 chr4 166238342 166238457 -18050205 - L3b LINE CR1 -354 1229 1107 21 0 0 0 chr4 166238710 166238731 -18049931 + AT_rich Low_complexity Low_complexity 1 21 0 287 157 14 0 chr4 166240296 166240366 -18048296 + GA-rich Low_complexity Low_complexity 2 72 0 347 352 40 55 chr4 166240492 166240893 -18047769 + L2 LINE L2 2383 2777 -537 667 135 126 2 chr4 166241249 166241472 -18047190 + AluSx SINE Alu 12 298 -14 210 192 14 110 chr4 166241506 166241579 -18047083 - L2 LINE L2 0 3272 3207 352 233 47 47 chr4 166241735 166241864 -18046798 - MIR SINE MIR -10 252 124 5965 207 2 15 chr4 166241880 166241942 -18046720 - L1 LINE L1 -793 5353 5292 2393 91 10 0 chr4 166241942 166242249 -18046413 - AluSp SINE Alu -1 312 3 5965 207 2 15 chr4 166242249 166243628 -18045034 - L1 LINE L1 -854 5292 3930 3925 122 27 3 chr4 166243625 166244055 -18044607 + L1PB1 LINE L1 5346 5799 -352 * 534 103 0 0 chr4 166244055 166244133 -18044529 + (TA)n Simple_repeat Simple_repeat 2 79 0 3925 122 27 3 chr4 166244133 166244359 -18044303 + L1PB1 LINE L1 5799 6018 -133 398 171 51 63 chr4 166244400 166244558 -18044104 + HsTC2 DNA Tc2 1641 1796 -102 198 302 62 10 chr4 166244560 166244656 -18044006 - MIR SINE MIR -157 105 5 803 194 71 155 chr4 166244926 166245333 -18043329 + MLT1A2 LTR MaLR 2 374 0 543 158 31 153 chr4 166245475 166245671 -18042991 - MER20 DNA MER1_type 0 219 48 879 134 0 0 chr4 166246453 166246595 -18042067 + (TA)n Simple_repeat Simple_repeat 1 142 0 2088 179 66 0 chr4 166247094 166247518 -18041144 + MER6A DNA MER2_type 1 452 -153 723 249 27 44 chr4 166247523 166247748 -18040914 + LTR51 LTR ERV1 297 517 -154 893 118 39 0 chr4 166247911 166248064 -18040598 + MER6A DNA MER2_type 447 605 0 261 388 28 14 chr4 166248649 166248863 -18039799 + L2 LINE L2 2613 2829 -485 278 267 0 67 chr4 166249614 166249734 -18038928 - MER102b DNA MER1_type -15 326 215 17408 42 2 1 chr4 166249777 166252695 -18035967 - L1PA4 LINE L1 -5 6150 3223 240 279 44 0 chr4 166252719 166252787 -18035875 - MER102b DNA MER1_type -142 199 129 1249 62 0 0 chr4 166252787 166252949 -18035713 - L1PA4 LINE L1 0 6155 5994 225 191 21 0 chr4 166253179 166253226 -18035436 + (TG)n Simple_repeat Simple_repeat 2 49 0 415 266 42 23 chr4 166253226 166253488 -18035174 - L1ME LINE L1 -714 6247 5983 2709 163 41 69 chr4 166253500 166254152 -18034510 - MER4D LTR ERV1 -32 871 238 1397 159 21 25 chr4 166254218 166254501 -18034161 - MER49 LTR ERV1 -641 282 1 1229 197 134 22 chr4 166255159 166255428 -18033234 - AluJo SINE Alu -3 299 1 2130 125 3 3 chr4 166255685 166255974 -18032688 - AluSx SINE Alu -23 289 1 1285 248 91 13 chr4 166255977 166256655 -18032007 - L1ME LINE L1 -1398 5543 4813 1044 251 140 28 chr4 166256692 166256783 -18031879 + MER97b DNA MER1_type? 72 151 -902 1496 222 34 16 chr4 166256783 166257166 -18031496 + MLT1B LTR MaLR 1 390 0 1044 251 140 28 chr4 166257166 166257563 -18031099 + MER97b DNA MER1_type? 151 600 -453 686 300 100 30 chr4 166257751 166258680 -18029982 - L1MCc LINE L1 -4754 2368 1162 1810 129 81 0 chr4 166259005 166259277 -18029385 + AluSg SINE Alu 1 294 -16 225 0 0 0 chr4 166259289 166259314 -18029348 + (TG)n Simple_repeat Simple_repeat 2 26 0 345 24 0 0 chr4 166259330 166259372 -18029290 + (TC)n Simple_repeat Simple_repeat 2 43 0 279 0 0 0 chr4 166259371 166259402 -18029260 + (TA)n Simple_repeat Simple_repeat 1 31 0 * 248 211 0 0 chr4 166259424 166259481 -18029181 - L1MCc LINE L1 -6341 82 26 1986 128 62 106 chr4 166259694 166260147 -18028515 - Tigger2a DNA MER2_type 0 434 2 22 80 0 0 chr4 166260319 166260369 -18028293 + AT_rich Low_complexity Low_complexity 1 50 0 1206 296 111 29 chr4 166261486 166262034 -18026628 + MLT1E LTR MaLR 1 593 0 302 282 77 26 chr4 166262278 166262395 -18026267 - MIR SINE MIR -27 235 113 21 0 0 0 chr4 166262828 166262849 -18025813 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr4 166263155 166263183 -18025479 + AT_rich Low_complexity Low_complexity 1 28 0 3153 310 81 4 chr4 166264392 166265517 -18023145 + L2 LINE L2 377 1587 -1727 544 261 62 78 chr4 166265569 166265826 -18022836 + L2 LINE L2 3060 3312 -1 453 190 0 0 chr4 166266033 166266112 -18022550 - AluS SINE Alu -222 91 13 9187 129 30 1 chr4 166266657 166268926 -18019736 + L1PA10 LINE L1 3864 6152 -16 2359 154 36 16 chr4 166268994 166269435 -18019227 - L1PA16 LINE L1 -8 6158 5709 390 173 0 0 chr4 166271509 166271584 -18017078 + GA-rich Low_complexity Low_complexity 3 77 0 394 129 0 16 chr4 166271586 166271648 -18017014 + (GAGAA)n Simple_repeat Simple_repeat 5 65 0 317 299 143 20 chr4 166272100 166272247 -18016415 - L3 LINE CR1 -586 991 827 335 230 51 88 chr4 166273281 166273498 -18015164 - HAL1 LINE L1 -58 2449 2241 406 308 72 65 chr4 166273861 166273990 -18014672 - HAL1 LINE L1 -1411 1096 969 2488 68 0 7 chr4 166273990 166274300 -18014362 - AluSc SINE Alu -1 308 1 406 308 72 65 chr4 166274300 166274449 -18014213 - HAL1 LINE L1 -1538 969 816 186 43 0 0 chr4 166276034 166276057 -18012605 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2033 142 0 0 chr4 166276060 166276342 -18012320 - AluSx SINE Alu -30 282 1 2511 116 0 19 chr4 166276428 166276799 -18011863 - THE1B LTR MaLR 0 364 1 276 338 137 0 chr4 166276998 166277137 -18011525 + L3 LINE CR1 328 485 -1092 249 57 0 0 chr4 166277958 166277993 -18010669 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 17428 47 1 1 chr4 166277993 166280899 -18007763 - L1PA5 LINE L1 -24 6130 3223 262 279 44 0 chr4 166280923 166280991 -18007671 - Charlie8 DNA MER1_type -2229 188 118 1315 59 0 0 chr4 166280991 166281160 -18007502 - L1PA4 LINE L1 0 6155 5987 2108 46 0 0 chr4 166281160 166281419 -18007243 + L1PA4 LINE L1 5729 5987 -167 27 0 0 0 chr4 166281790 166281817 -18006845 + AT_rich Low_complexity Low_complexity 1 27 0 729 183 0 15 chr4 166281817 166281948 -18006714 - FLAM_C SINE Alu -14 129 1 35 41 0 0 chr4 166281948 166281997 -18006665 + AT_rich Low_complexity Low_complexity 1 49 0 222 374 41 16 chr4 166284713 166284836 -18003826 + L3b LINE CR1 1415 1540 -43 7402 39 0 0 chr4 166285825 166286846 -18001816 + L1PA4 LINE L1 5130 6150 -5 4612 210 83 53 chr4 166287096 166288734 -17999928 + L1MC1 LINE L1 3980 5716 -617 3380 122 4 33 chr4 166288734 166289250 -17999412 + MER61D LTR ERV1 1 501 0 4612 210 83 53 chr4 166289250 166289888 -17998774 + L1MC1 LINE L1 5716 6333 0 1931 187 36 34 chr4 166289885 166290324 -17998338 + L1MC2 LINE L1 5894 6333 -11 * 1298 202 27 131 chr4 166290397 166290848 -17997814 - MER67D LTR ERV1 -110 404 1 2126 122 0 3 chr4 166291148 166291452 -17997210 - AluY SINE Alu -4 307 5 3708 154 56 55 chr4 166291481 166291523 -17997139 - L1MA9 LINE L1 -40 6272 6232 2282 172 38 45 chr4 166291523 166291993 -17996669 - LTR24 LTR ERV1 0 467 1 3708 154 56 55 chr4 166291993 166292332 -17996330 - L1MA9 LINE L1 -80 6232 5895 2240 98 16 7 chr4 166292332 166292637 -17996025 - AluSg SINE Alu -2 308 1 3708 154 56 55 chr4 166292637 166293113 -17995549 - L1MA9 LINE L1 -417 5895 5413 286 360 0 65 chr4 166294089 166294242 -17994420 + MIR SINE MIR 66 208 -54 26 30 0 0 chr4 166294881 166294914 -17993748 + AT_rich Low_complexity Low_complexity 1 33 0 1457 249 115 7 chr4 166297129 166297591 -17991071 - LTR33 LTR ERVL -5 516 5 289 274 86 0 chr4 166298521 166298638 -17990024 + MLT1I LTR MaLR 6 132 -277 3529 59 57 22 chr4 166299220 166299737 -17988925 + L1PA7 LINE L1 5261 5785 -369 42016 35 32 14 chr4 166299738 166305179 -17983483 + L1PA2 LINE L1 1 5540 -615 2949 51 12 7 chr4 166305281 166305690 -17982972 + L1PA2 LINE L1 5741 6151 -4 2997 65 0 0 chr4 166305690 166306065 -17982597 + L1PA7 LINE L1 5769 6151 -3 25 35 0 52 chr4 166307518 166307545 -17981117 + AT_rich Low_complexity Low_complexity 1 28 -27 2050 94 0 0 chr4 166307545 166307799 -17980863 + AluSx SINE Alu 33 286 -26 25 35 0 52 chr4 166307799 166307829 -17980833 + AT_rich Low_complexity Low_complexity 28 55 0 272 317 60 30 chr4 166309342 166309509 -17979153 + MLT1J1 LTR MaLR 41 212 -234 406 167 0 15 chr4 166310071 166310137 -17978525 + AluS SINE Alu 1 65 -246 208 287 35 21 chr4 166310264 166310407 -17978255 + (TATG)n Simple_repeat Simple_repeat 3 147 0 * 224 257 46 9 chr4 166310305 166310414 -17978248 + (TA)n Simple_repeat Simple_repeat 2 114 0 323 125 31 10 chr4 166310463 166310559 -17978103 - Charlie2a DNA MER1_type -511 2351 2254 916 255 31 45 chr4 166310671 166311024 -17977638 - Charlie2a DNA MER1_type -867 1995 1648 797 262 25 25 chr4 166311033 166311177 -17977485 - Charlie2a DNA MER1_type -2159 623 477 1559 159 101 40 chr4 166311177 166311504 -17977158 + MER7A DNA MER2_type 1 345 -1 797 262 25 25 chr4 166311504 166311603 -17977059 - Charlie2a DNA MER1_type -2304 478 380 465 300 101 66 chr4 166314519 166314784 -17973878 - MLT1J LTR MaLR -152 359 78 2177 143 22 6 chr4 166314784 166315142 -17973520 - THE1B LTR MaLR 0 364 1 465 300 101 66 chr4 166315142 166315223 -17973439 - MLT1J LTR MaLR -433 78 1 193 278 37 93 chr4 166315562 166315724 -17972938 + L2 LINE L2 1677 1829 -1485 2939 214 60 22 chr4 166315820 166316371 -17972291 - L1MB7 LINE L1 -48 6136 5544 1912 174 20 50 chr4 166316371 166316773 -17971889 - MLT1B LTR MaLR 0 390 1 2939 214 60 22 chr4 166316773 166317025 -17971637 - L1MB7 LINE L1 -640 5544 5303 2245 145 3 3 chr4 166317200 166317565 -17971097 - MER47A DNA MER2_type -1 365 1 225 349 28 18 chr4 166318301 166318410 -17970252 + L2 LINE L2 3197 3306 -7 274 309 152 29 chr4 166318499 166318742 -17969920 + L2 LINE L2 2543 2815 -499 2910 89 13 0 chr4 166319646 166320029 -17968633 + MLT2A2 LTR ERVL 1 388 -65 225 0 0 0 chr4 166320075 166320100 -17968562 + (TA)n Simple_repeat Simple_repeat 2 26 0 631 199 175 0 chr4 166320977 166321067 -17967595 + MER3 DNA MER1_type 15 88 -121 2261 110 0 0 chr4 166321067 166321368 -17967294 - AluSp SINE Alu -12 301 1 631 199 175 0 chr4 166321368 166321443 -17967219 + MER3 DNA MER1_type 88 209 0 1836 323 151 48 chr4 166321487 166322165 -17966497 + L2 LINE L2 124 731 -2583 3553 71 16 6 chr4 166322165 166322656 -17966006 - L1PA13 LINE L1 -6 6157 5662 1836 323 151 48 chr4 166322656 166323871 -17964791 + L2 LINE L2 731 2211 -1103 2168 109 0 34 chr4 166323941 166324263 -17964399 - AluY SINE Alu 0 311 1 5423 117 19 34 chr4 166324632 166325711 -17962951 + L1PA16 LINE L1 5095 6161 -5 31 44 0 0 chr4 166325736 166325781 -17962881 + AT_rich Low_complexity Low_complexity 1 45 0 949 240 44 4 chr4 166325804 166326075 -17962587 - L1MB7 LINE L1 -1029 5117 4836 74 12 0 0 chr4 166326075 166326156 -17962506 + AT_rich Low_complexity Low_complexity 1 81 0 237 155 0 0 chr4 166326156 166326214 -17962448 + (TA)n Simple_repeat Simple_repeat 1 58 0 360 244 45 62 chr4 166326302 166326478 -17962184 - HAL1 LINE L1 0 2507 2335 25 31 0 0 chr4 166326499 166326531 -17962131 + AT_rich Low_complexity Low_complexity 1 32 0 610 297 103 11 chr4 166326546 166326926 -17961736 + HAL1 LINE L1 1093 1507 -1000 659 198 0 0 chr4 166326969 166327085 -17961577 + MER58B DNA MER1_type 226 341 0 300 278 133 0 chr4 166327089 166327240 -17961422 + HAL1 LINE L1 1513 1683 -824 1379 235 23 44 chr4 166327419 166327848 -17960814 - LTR52 LTR ERVL -1 420 1 24 0 0 0 chr4 166327854 166327878 -17960784 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 166327946 166327967 -17960695 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 166328617 166328642 -17960020 + AT_rich Low_complexity Low_complexity 1 25 0 910 127 0 42 chr4 166328968 166329110 -17959552 - AluSq/x SINE Alu -177 136 1 365 344 162 32 chr4 166329177 166329523 -17959139 - L1MC4a LINE L1 -866 6942 6552 9442 229 17 9 chr4 166329718 166332085 -17956577 - L1 LINE L1 -1015 5131 2747 2910 0 0 0 chr4 166332085 166332396 -17956266 + AluYa5 SINE Alu 1 311 0 24 147 0 0 chr4 166332396 166332430 -17956232 + AT_rich Low_complexity Low_complexity 1 34 0 1357 176 0 7 chr4 166332540 166332812 -17955850 + AluYa5 SINE Alu 42 311 0 252 0 0 0 chr4 166332817 166332845 -17955817 + (TA)n Simple_repeat Simple_repeat 2 29 0 1453 243 11 159 chr4 166332876 166333435 -17955227 - L1PA13 LINE L1 -4850 2724 2256 411 313 25 17 chr4 166334101 166334338 -17954324 - L1PA13 LINE L1 -5276 2298 2085 1070 329 28 39 chr4 166334363 166334929 -17953733 - L1PA13 LINE L1 -6208 1366 807 50 51 0 0 chr4 166335113 166335191 -17953471 + AT_rich Low_complexity Low_complexity 1 78 0 428 216 207 0 chr4 166336759 166336875 -17951787 + MER34 LTR ERV1 1 140 -402 854 232 34 34 chr4 166336920 166337157 -17951505 + MER39 LTR ERV1 330 566 -141 1075 88 76 100 chr4 166337172 166337421 -17951241 - L1MA2 LINE L1 -1 6303 6061 369 185 30 35 chr4 166337441 166337552 -17951110 + MER34 LTR ERV1 385 662 -45 712 140 35 18 chr4 166338214 166338385 -17950277 + CT-rich Low_complexity Low_complexity 4 177 0 1950 239 92 19 chr4 166338460 166339121 -17949541 - L1MC2 LINE L1 -6 8036 6247 641 287 42 26 chr4 166339209 166339474 -17949188 - MLT2E LTR ERVL -95 533 265 911 240 11 22 chr4 166339538 166339813 -17948849 + L1M4 LINE L1 4366 4637 -1509 776 224 11 11 chr4 166339951 166340130 -17948532 - MER39 LTR ERV1 0 707 529 9220 30 2 0 chr4 166340310 166341405 -17947257 - L1PA3 LINE L1 -1177 4969 3873 7531 24 8 0 chr4 166341405 166342597 -17946065 + L1PA3 LINE L1 4954 6152 -3 954 232 52 8 chr4 166342597 166342847 -17945815 - MER39 LTR ERV1 -197 510 250 846 272 51 19 chr4 166342914 166343230 -17945432 + L1M4 LINE L1 4787 5112 -1034 30 45 0 0 chr4 166343801 166343845 -17944817 + AT_rich Low_complexity Low_complexity 1 44 0 1245 134 0 5 chr4 166344560 166344746 -17943916 + AluSg/x SINE Alu 124 308 -2 629 317 64 11 chr4 166345089 166345464 -17943198 + L2 LINE L2 2745 3136 -177 265 310 30 0 chr4 166345563 166345663 -17942999 + L2 LINE L2 3140 3242 -71 424 174 6 47 chr4 166346724 166347070 -17941592 + (TA)n Simple_repeat Simple_repeat 1 331 0 528 143 0 46 chr4 166347120 166347579 -17941083 + (TA)n Simple_repeat Simple_repeat 1 437 0 330 26 0 0 chr4 166347912 166347951 -17940711 + (TG)n Simple_repeat Simple_repeat 1 39 0 826 221 35 54 chr4 166348251 166348568 -17940094 - L1ME1 LINE L1 -5 6161 5851 628 286 40 4 chr4 166348573 166348825 -17939837 - L1M4 LINE L1 -1982 4164 3904 249 57 0 0 chr4 166349063 166349098 -17939564 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 39323 73 8 6 chr4 166349098 166355200 -17933462 - L1PA5 LINE L1 -24 6130 11 225 206 29 103 chr4 166355502 166355570 -17933092 + MER5A DNA MER1_type 9 71 -118 1268 131 0 4 chr4 166355627 166355872 -17932790 - AluY SINE Alu 0 336 1 557 13 0 38 chr4 166356848 166356927 -17931735 + L1PA2 LINE L1 6079 6154 -1 1740 200 35 11 chr4 166356985 166357420 -17931242 - LTR56 LTR ERV1 0 445 1 429 216 0 0 chr4 166357698 166357772 -17930890 + MER34C LTR ERV1 1 74 -511 2502 179 141 11 chr4 166357772 166358313 -17930349 - LTR36 LTR ERV1 0 611 1 436 333 56 85 chr4 166358346 166358794 -17929868 - LTR36-int LTR ERV1 -67 7055 6621 412 157 29 0 chr4 166358833 166358903 -17929759 - MER49 LTR ERV1 -171 752 681 654 210 88 54 chr4 166358929 166359134 -17929528 - LTR36-int LTR ERV1 -206 6125 5914 3740 165 59 52 chr4 166359163 166360051 -17928611 - LTR36-int LTR ERV1 -423 6175 5017 1007 187 45 109 chr4 166360048 166360315 -17928347 + MER83B-int LTR ERV1 3160 3409 -4128 * 330 265 68 8 chr4 166360411 166360543 -17928119 + MER83B-int LTR ERV1 1843 1982 -4616 * 458 190 10 10 chr4 166360540 166360640 -17928022 + MER83B-int LTR ERV1 3409 3508 -4029 2998 139 10 48 chr4 166360640 166361379 -17927283 + MER83B-int LTR ERV1 2299 2780 -2100 440 360 11 50 chr4 166361571 166361832 -17926830 - LTR36-int LTR ERV1 -1389 397 147 1685 155 59 16 chr4 166361912 166362451 -17926211 - LTR36 LTR ERV1 0 611 1 * 2685 144 60 20 chr4 166362451 166362946 -17925716 + MER34C LTR ERV1 71 585 0 1987 127 3 39 chr4 166363080 166363387 -17925275 + AluSx SINE Alu 3 298 -14 204 322 115 0 chr4 166363681 166363768 -17924894 + MER5A DNA MER1_type 13 109 -80 243 195 23 149 chr4 166364068 166364155 -17924507 + L2 LINE L2 3197 3272 0 1547 214 41 91 chr4 166365782 166366320 -17922342 + MLT2B1 LTR ERVL 3 513 -7 279 345 109 0 chr4 166367699 166367818 -17920844 + MIR SINE MIR 2 133 -129 23 54 0 0 chr4 166368432 166368469 -17920193 + AT_rich Low_complexity Low_complexity 1 37 0 1052 23 0 23 chr4 166368609 166368740 -17919922 + L1PA5 LINE L1 6024 6151 -3 3800 223 34 61 chr4 166368742 166369020 -17919642 + L1MB7 LINE L1 4156 4440 -1706 2337 101 3 0 chr4 166369020 166369326 -17919336 + AluSc SINE Alu 1 307 -2 3800 223 34 61 chr4 166369326 166370301 -17918361 + L1MB7 LINE L1 4440 5374 -772 3279 190 71 3 chr4 166370302 166370982 -17917680 + L1MB7 LINE L1 5410 6135 -49 431 260 78 26 chr4 166370971 166371125 -17917537 + L1ME LINE L1 5588 5749 -417 * 535 270 18 6 chr4 166371161 166371384 -17917278 + L1MA10 LINE L1 5945 6327 -7 249 233 110 14 chr4 166376036 166376109 -17912553 - MIR SINE MIR -73 189 110 23 54 0 0 chr4 166376601 166376638 -17912024 + AT_rich Low_complexity Low_complexity 1 37 0 854 305 70 47 chr4 166376730 166376764 -17911898 + L1ME LINE L1 701 733 -5528 855 184 23 0 chr4 166376764 166376938 -17911724 + L1MA1 LINE L1 6125 6302 0 854 305 70 47 chr4 166376938 166378040 -17910622 + L1ME LINE L1 733 1891 -4370 1523 194 32 14 chr4 166378040 166378323 -17910339 + AluJo SINE Alu 1 288 -24 854 305 70 47 chr4 166378323 166378667 -17909995 + L1ME LINE L1 1891 2226 -4035 1158 314 67 5 chr4 166378670 166379166 -17909496 - L2 LINE L2 -250 3063 2531 1029 192 25 42 chr4 166380823 166381063 -17907599 + LTR65 LTR ERV1 167 402 -267 286 253 11 74 chr4 166381353 166381463 -17907199 + LTR65 LTR ERV1 486 642 -26 290 227 85 99 chr4 166383095 166383236 -17905426 - L2 LINE L2 -2 3311 3173 468 343 20 5 chr4 166383369 166383570 -17905092 - MIR SINE MIR -10 252 49 29 0 0 0 chr4 166383751 166383780 -17904882 + AT_rich Low_complexity Low_complexity 1 29 0 466 314 85 45 chr4 166384326 166384727 -17903935 - MLT1L LTR MaLR -2 613 197 633 279 56 52 chr4 166384729 166385023 -17903639 + LTR33A LTR ERVL 2 342 -181 1584 209 28 14 chr4 166385023 166385382 -17903280 + MLT1A1 LTR MaLR 2 365 0 633 279 56 52 chr4 166385382 166385561 -17903101 + LTR33A LTR ERVL 342 519 -4 225 220 20 0 chr4 166385566 166385616 -17903046 - MLT1L LTR MaLR -408 207 157 1004 240 34 81 chr4 166385830 166386239 -17902423 - MLT1B LTR MaLR 0 390 1 5440 98 37 37 chr4 166386699 166387799 -17900863 + L1PA13 LINE L1 5064 6162 -1 358 272 54 34 chr4 166390034 166390181 -17898481 + MER5B DNA MER1_type 29 178 0 260 233 41 0 chr4 166390519 166390592 -17898070 + (CA)n Simple_repeat Simple_repeat 1 76 0 859 249 132 80 chr4 166390694 166391022 -17897640 - MLT1D LTR MaLR -2 503 141 13419 29 2 3 chr4 166391022 166393396 -17895266 + L1PA3 LINE L1 3783 6155 0 859 249 132 80 chr4 166393396 166393545 -17895117 - MLT1D LTR MaLR -364 141 1 1381 222 47 0 chr4 166396294 166396573 -17892089 + AluJo SINE Alu 1 292 -20 288 53 0 0 chr4 166398040 166398078 -17890584 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1473 225 119 37 chr4 166398177 166399063 -17889599 - LTR28 LTR ERV1 0 1020 1 2340 261 134 4 chr4 166399479 166399631 -17889031 - L1MD2 LINE L1 0 8042 7911 228 111 0 0 chr4 166399631 166399667 -17888995 + (CA)n Simple_repeat Simple_repeat 1 36 0 2340 261 134 4 chr4 166399667 166400382 -17888280 - L1MD2 LINE L1 -131 7911 7290 216 0 0 0 chr4 166400382 166400406 -17888256 + (TTAA)n Simple_repeat Simple_repeat 2 25 0 2340 261 134 4 chr4 166400406 166400443 -17888219 - L1MD2 LINE L1 -752 7290 6241 1334 240 134 112 chr4 166400428 166401393 -17887269 - L1MC4a LINE L1 -888 6920 5935 * 1899 167 0 0 chr4 166401396 166401696 -17886966 - AluJb SINE Alu -1 311 12 2339 166 31 2 chr4 166401821 166402237 -17886425 + MSTA LTR MaLR 1 428 0 2028 182 23 37 chr4 166403268 166403702 -17884960 + MSTA LTR MaLR 1 428 0 201 154 0 0 chr4 166404943 166404982 -17883680 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1555 201 16 7 chr4 166405694 166406003 -17882659 + AluJb SINE Alu 1 312 0 1120 208 35 0 chr4 166406017 166406248 -17882414 + AluJb SINE Alu 68 306 -6 238 333 40 0 chr4 166406254 166406329 -17882333 - L2 LINE L2 -22 3250 3173 617 282 50 23 chr4 166406873 166407093 -17881569 - MIR SINE MIR -11 251 26 23 0 0 0 chr4 166408048 166408071 -17880591 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr4 166408085 166408110 -17880552 + AT_rich Low_complexity Low_complexity 1 25 0 262 286 122 32 chr4 166408317 166408506 -17880156 + LTR67 LTR ERVL 352 557 0 197 394 109 22 chr4 166408840 166408977 -17879685 - MIR3 SINE MIR -57 151 3 618 313 59 36 chr4 166409436 166409743 -17878919 - L2 LINE L2 -2 3311 2998 * 1167 253 72 59 chr4 166409734 166410189 -17878473 - L2 LINE L2 -1940 1374 914 311 289 70 83 chr4 166410212 166410236 -17878426 - MIR SINE MIR -7 255 232 2290 46 0 18 chr4 166410236 166410521 -17878141 + AluY SINE Alu 1 311 0 240 0 32 0 chr4 166410521 166410552 -17878110 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 311 289 70 83 chr4 166410552 166410682 -17877980 - MIR SINE MIR -30 232 102 191 349 110 9 chr4 166411269 166411378 -17877284 - MIR3 SINE MIR -77 131 12 2259 100 0 0 chr4 166411702 166411992 -17876670 - AluY SINE Alu -21 290 1 352 361 52 34 chr4 166412627 166412784 -17875878 + L1ME1 LINE L1 5383 5536 -630 1507 131 120 75 chr4 166412784 166413143 -17875519 + THE1C LTR MaLR 1 375 0 352 361 52 34 chr4 166413143 166413481 -17875181 + L1ME1 LINE L1 5536 5887 -279 599 195 184 26 chr4 166414577 166414767 -17873895 + MLT1C LTR MaLR 38 257 -210 351 187 0 27 chr4 166414768 166414843 -17873819 + MLT1C LTR MaLR 393 465 -2 25 31 0 0 chr4 166414904 166414936 -17873726 + AT_rich Low_complexity Low_complexity 1 32 0 803 266 113 5 chr4 166415000 166415222 -17873440 + MIR SINE MIR 1 246 -16 773 113 113 0 chr4 166416015 166416139 -17872523 + MER85 DNA T2_type 2 139 0 1024 234 57 4 chr4 166416168 166416395 -17872267 - MER8 DNA MER2_type 0 239 1 180 0 0 0 chr4 166416412 166416432 -17872230 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 1214 208 42 62 chr4 166416435 166416825 -17871837 + MLT2D LTR ERVL 1 480 -40 262 294 24 0 chr4 166416854 166416939 -17871723 + L1MC4 LINE L1 6615 6701 -1341 247 194 0 48 chr4 166416910 166416972 -17871690 - L1MCa LINE L1 -4362 2064 2006 * 248 279 0 0 chr4 166416967 166417046 -17871616 + L1MC4 LINE L1 6614 6692 -1350 1488 160 59 56 chr4 166417125 166417499 -17871163 - THE1C LTR MaLR 0 375 1 336 321 37 52 chr4 166417507 166417641 -17871021 - MIR SINE MIR -115 147 16 6177 123 6 5 chr4 166418101 166420349 -17868313 + L1PA10 LINE L1 3862 6166 -2 201 74 0 0 chr4 166421003 166421030 -17867632 + (TTC)n Simple_repeat Simple_repeat 2 28 0 2420 138 3 3 chr4 166421673 166422035 -17866627 - THE1B LTR MaLR -2 362 1 8876 206 91 45 chr4 166422234 166422453 -17866209 + L1MDa LINE L1 3 211 -6329 1831 166 55 17 chr4 166422453 166422814 -17865848 - THE1C LTR MaLR 0 375 1 8876 206 91 45 chr4 166422814 166425053 -17863609 + L1MDa LINE L1 211 2840 -3700 1642 143 31 89 chr4 166425053 166425088 -17863574 - MER1B DNA MER1_type -2373 337 302 2247 115 0 0 chr4 166425088 166425392 -17863270 - AluSx SINE Alu -8 304 1 1642 143 31 89 chr4 166425392 166425714 -17862948 - MER1B DNA MER1_type -2408 302 1 8876 206 91 45 chr4 166425714 166425968 -17862694 + L1MDa LINE L1 2840 3081 -3459 3907 160 10 75 chr4 166425979 166426755 -17861907 + MER44D DNA MER2_type 8 605 0 2050 237 87 24 chr4 166426757 166427608 -17861054 + L1MDa LINE L1 3083 3987 -2553 216 232 36 18 chr4 166427622 166427678 -17860984 + MIR3 SINE MIR 123 179 -29 432 280 30 0 chr4 166430072 166430172 -17858490 - MER81 DNA DNA -4 110 8 2226 97 3 19 chr4 166430344 166430652 -17858010 + AluSc SINE Alu 1 303 -6 194 352 76 29 chr4 166430747 166430852 -17857810 - L2 LINE L2 -12 3260 3151 222 292 15 0 chr4 166431448 166431513 -17857149 + L2 LINE L2 2671 2736 -578 441 208 39 39 chr4 166431916 166432046 -17856616 + L2 LINE L2 3169 3298 -15 226 233 0 0 chr4 166432653 166432696 -17855966 + (TATG)n Simple_repeat Simple_repeat 3 45 0 273 247 32 21 chr4 166433383 166433476 -17855186 + L1MC5 LINE L1 7820 7913 -48 2716 194 79 5 chr4 166433921 166434479 -17854183 + MER7C DNA MER2_type 1 599 -3 211 306 0 0 chr4 166434482 166434531 -17854131 + MIR3 SINE MIR 9 57 -151 1954 114 25 14 chr4 166434543 166434824 -17853838 + AluSg1 SINE Alu 1 284 -25 48 0 0 0 chr4 166434824 166434872 -17853790 + AT_rich Low_complexity Low_complexity 1 48 0 214 235 88 66 chr4 166435395 166435531 -17853131 + L2 LINE L2 3159 3297 -16 260 212 165 0 chr4 166437185 166437271 -17851391 + MIR3 SINE MIR 78 183 -25 340 262 134 23 chr4 166437560 166437732 -17850930 - MIR SINE MIR 0 262 72 21 71 0 0 chr4 166437839 166437881 -17850781 + AT_rich Low_complexity Low_complexity 1 42 0 358 256 111 70 chr4 166438295 166438389 -17850273 - L2 LINE L2 -17 3296 3207 1678 175 30 3 chr4 166438389 166438686 -17849976 - AluJb SINE Alu -7 305 1 358 256 111 70 chr4 166438686 166438763 -17849899 - L2 LINE L2 -106 3207 3118 3277 79 0 24 chr4 166439880 166440335 -17848327 + MLT2A1 LTR ERVL 1 444 0 7471 33 1 2 chr4 166440821 166442226 -17846436 + L1PA5 LINE L1 4747 6150 -4 24 0 0 0 chr4 166442333 166442357 -17846305 + AT_rich Low_complexity Low_complexity 1 24 0 688 274 80 36 chr4 166442869 166442956 -17845706 + L1MC5 LINE L1 7388 7470 -491 225 94 0 0 chr4 166442956 166442988 -17845674 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 688 274 80 36 chr4 166442988 166443374 -17845288 + L1MC5 LINE L1 7470 7882 -79 525 213 9 0 chr4 166443374 166443482 -17845180 - MLT1A1 LTR MaLR 0 365 257 313 270 164 16 chr4 166443685 166443874 -17844788 - L1MEd LINE L1 -3067 3062 2846 579 268 6 56 chr4 166443993 166444172 -17844490 - MER96 DNA MER1_type? 0 175 6 529 254 0 9 chr4 166444179 166444293 -17844369 - MER58A DNA MER1_type 0 113 1 231 256 88 73 chr4 166444298 166444615 -17844047 - L1MEd LINE L1 -5089 1030 709 1013 197 16 0 chr4 166444706 166444889 -17843773 + MER5A DNA MER1_type 4 189 0 510 315 98 30 chr4 166448074 166448480 -17840182 + L1M4 LINE L1 4311 4744 -1402 227 224 17 0 chr4 166449350 166449408 -17839254 + CT-rich Low_complexity Low_complexity 1 59 0 227 352 56 24 chr4 166449861 166449986 -17838676 - MER91A DNA MER1_type -67 129 1 14857 142 19 5 chr4 166450029 166451427 -17837235 - Tigger1 DNA MER2_type -2 2416 968 2653 94 21 0 chr4 166451427 166451811 -17836851 - L1PA13 LINE L1 -1 6162 5771 14857 142 19 5 chr4 166451811 166452794 -17835868 - Tigger1 DNA MER2_type -1450 968 1 269 241 86 26 chr4 166452859 166452975 -17835687 - L1P5 LINE L1 -700 5451 5329 22 0 0 0 chr4 166453699 166453721 -17834941 + AT_rich Low_complexity Low_complexity 1 22 0 234 271 59 24 chr4 166454879 166454964 -17833698 - MIR SINE MIR -73 189 102 29 28 0 0 chr4 166455207 166455243 -17833419 + AT_rich Low_complexity Low_complexity 1 36 0 1636 282 98 20 chr4 166456432 166457031 -17831631 + Zaphod DNA AcHobo 9 654 -3377 304 309 208 27 chr4 166457036 166457330 -17831332 + L2 LINE L2 1863 2209 -1105 202 333 71 0 chr4 166457745 166457829 -17830833 - L2 LINE L2 -17 3296 3207 2657 266 100 14 chr4 166458184 166458901 -17829761 - MLT-int LTR MaLR -109 1626 848 1668 166 107 46 chr4 166458983 166459356 -17829306 - MSTD LTR MaLR 0 396 1 1887 238 42 37 chr4 166459356 166459865 -17828797 + MER74B LTR ERVL 63 545 -77 863 259 82 31 chr4 166460064 166460381 -17828281 + L2 LINE L2 2030 2362 -952 578 294 109 33 chr4 166460455 166460894 -17827768 + L2 LINE L2 2668 3127 -186 31 58 0 0 chr4 166460947 166460999 -17827663 + AT_rich Low_complexity Low_complexity 1 52 0 309 290 29 72 chr4 166461042 166461141 -17827521 + L2 LINE L2 3182 3275 -38 1605 160 62 46 chr4 166461141 166461510 -17827152 + THE1C LTR MaLR 1 375 0 309 290 29 72 chr4 166461510 166461548 -17827114 + L2 LINE L2 3275 3313 0 23 68 0 0 chr4 166461806 166461850 -17826812 + AT_rich Low_complexity Low_complexity 1 44 0 21 71 0 0 chr4 166462024 166462066 -17826596 + AT_rich Low_complexity Low_complexity 1 42 0 610 291 131 27 chr4 166463261 166463862 -17824800 - L1ME3A LINE L1 -189 5964 5301 524 276 94 94 chr4 166463879 166464379 -17824283 - L1ME3A LINE L1 -3535 2594 2095 714 292 122 54 chr4 166464484 166465519 -17823143 - L1MEd LINE L1 -4746 1564 417 524 15 15 0 chr4 166465565 166465630 -17823032 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 1914 172 35 60 chr4 166465630 166466061 -17822601 - MLT2B2 LTR ERVL -64 451 32 1969 115 35 3 chr4 166466299 166466587 -17822075 - AluSc SINE Alu -12 297 1 24 32 0 0 chr4 166466630 166466661 -17822001 + AT_rich Low_complexity Low_complexity 1 31 0 1807 113 30 116 chr4 166467031 166467246 -17821416 - MER1B DNA MER1_type -2374 338 167 1851 143 28 0 chr4 166467246 166467532 -17821130 + AluSx SINE Alu 2 295 -17 1807 113 30 116 chr4 166467532 166467686 -17820976 - MER1B DNA MER1_type -2545 167 1 375 164 82 0 chr4 166467770 166467843 -17820819 - MADE1 DNA Mariner 0 80 2 376 176 24 0 chr4 166469416 166469501 -17819161 - L1MA8 LINE L1 -2 7708 7622 12451 213 58 20 chr4 166469548 166472531 -17816131 - L1MA8 LINE L1 -267 7443 4421 2739 16 0 0 chr4 166472531 166472841 -17815821 - AluYa5 SINE Alu -1 310 1 12451 213 58 20 chr4 166472841 166475191 -17813471 - L1MA8 LINE L1 -3289 4421 2161 308 366 6 31 chr4 166476094 166476255 -17812407 - L1MA8 LINE L1 -5981 1515 1359 25 0 0 0 chr4 166476450 166476475 -17812187 + AT_rich Low_complexity Low_complexity 1 25 0 288 265 29 39 chr4 166477059 166477161 -17811501 - MER5A DNA MER1_type -45 144 44 238 268 27 107 chr4 166477069 166477181 -17811481 + MER5A DNA MER1_type 65 167 -22 * 35 24 0 0 chr4 166477243 166477285 -17811377 + AT_rich Low_complexity Low_complexity 1 42 0 1409 198 43 25 chr4 166477330 166477635 -17811027 - AluJb SINE Alu 0 310 1 255 254 132 26 chr4 166477639 166477753 -17810909 + L2 LINE L2 3117 3242 -71 6867 56 0 41 chr4 166477834 166478804 -17809858 - L1PA7 LINE L1 -2 6152 5192 748 84 0 0 chr4 166478804 166478911 -17809751 + L1P LINE L1 4251 4357 -1789 319 248 47 34 chr4 166478930 166479079 -17809583 + L1ME4a LINE L1 5970 6120 -1 30 45 0 0 chr4 166480893 166480937 -17807725 + AT_rich Low_complexity Low_complexity 1 44 0 367 288 61 61 chr4 166481116 166481442 -17807220 - L1ME3 LINE L1 -216 5946 5621 238 277 145 54 chr4 166481471 166481939 -17806723 - L1ME3 LINE L1 -2601 3545 3121 1676 65 9 13 chr4 166481939 166482168 -17806494 - L1PA8 LINE L1 -5 6167 5940 238 277 145 54 chr4 166482168 166482206 -17806456 - L1ME3 LINE L1 -3025 3121 3088 1544 272 129 17 chr4 166482206 166482802 -17805860 + MLT2F LTR ERVL 1 663 0 238 277 145 54 chr4 166482802 166483214 -17805448 - L1ME3 LINE L1 -3058 3088 2543 42856 42 6 11 chr4 166483235 166489422 -17799240 + L1PA4 LINE L1 1 6152 -3 4466 204 34 35 chr4 166489450 166490782 -17797880 - L1MA10 LINE L1 -1 6333 5001 2116 202 17 78 chr4 166490973 166491562 -17797100 - L1MA10 LINE L1 -1116 5030 4478 * 5033 200 14 19 chr4 166491560 166492107 -17796555 + L1 LINE L1 3272 3820 -2326 2383 159 119 2 chr4 166492107 166492554 -17796108 - MER61D LTR ERV1 -1 500 2 5033 200 14 19 chr4 166492554 166493135 -17795527 + L1 LINE L1 3820 4394 -1752 1241 197 108 17 chr4 166493772 166494099 -17794563 - MLT1A1 LTR MaLR 0 365 1 21 36 0 0 chr4 166494109 166494137 -17794525 + AT_rich Low_complexity Low_complexity 1 28 0 244 349 23 12 chr4 166495817 166495903 -17792759 - MIR SINE MIR -86 122 36 729 260 100 60 chr4 166496590 166496884 -17791778 + MLT1I LTR MaLR 24 337 -72 1690 216 177 2 chr4 166496884 166497314 -17791348 + MLT1D LTR MaLR 1 505 0 729 260 100 60 chr4 166497314 166497388 -17791274 + MLT1I LTR MaLR 337 407 -2 1555 172 4 4 chr4 166497605 166497873 -17790789 + L1MA10 LINE L1 5521 5788 -546 1112 105 165 31 chr4 166497875 166498367 -17790295 + MER4B LTR ERV1 3 610 0 2493 200 2 34 chr4 166498421 166498562 -17790100 + L1MA10 LINE L1 5790 5934 -400 1956 145 90 31 chr4 166498562 166498975 -17789687 + LTR23 LTR ERV1 1 437 0 2493 200 2 34 chr4 166498975 166499394 -17789268 + L1MA10 LINE L1 5934 6332 -2 1679 185 0 0 chr4 166500011 166500303 -17788359 - AluSx SINE Alu -17 295 4 477 122 37 0 chr4 166501101 166501183 -17787479 - L1MB1 LINE L1 0 6168 6084 3455 232 17 41 chr4 166501397 166502344 -17786318 + MER63C DNA MER1_type 7 930 0 291 208 0 0 chr4 166502541 166502594 -17786068 + AluSp/q SINE Alu 245 297 -6 709 153 0 0 chr4 166502594 166502705 -17785957 - AluSc SINE Alu -54 255 145 7213 47 3 0 chr4 166502882 166504012 -17784650 - L1PA5 LINE L1 0 6154 5019 258 176 98 0 chr4 166504012 166504063 -17784599 - AluY SINE Alu -186 115 60 1804 140 11 0 chr4 166504143 166504484 -17784178 - AluSg SINE Alu 0 344 1 23 0 0 0 chr4 166504607 166504630 -17784032 + AT_rich Low_complexity Low_complexity 1 23 0 183 100 0 0 chr4 166505439 166505469 -17783193 + (TG)n Simple_repeat Simple_repeat 2 31 0 330 353 37 16 chr4 166505469 166505659 -17783003 + MIR SINE MIR 9 202 -60 3215 136 90 16 chr4 166506148 166506716 -17781946 + LTR9 LTR ERV1 3 612 0 252 0 0 0 chr4 166508319 166508347 -17780315 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 5117 41 8 3 chr4 166508404 166509040 -17779622 - L1PA4 LINE L1 -2 6153 5515 4887 45 6 0 chr4 166509040 166509756 -17778906 + L1PA4 LINE L1 4767 5485 -669 439 346 79 57 chr4 166509970 166510538 -17778124 - L2 LINE L2 0 3272 2704 180 125 0 0 chr4 166510972 166511004 -17777658 + (GA)n Simple_repeat Simple_repeat 1 32 0 590 277 18 0 chr4 166511696 166511916 -17776746 - L1MEd LINE L1 -3653 2476 2253 4324 194 47 34 chr4 166511921 166513293 -17775369 - L1MC1 LINE L1 -1 6750 5362 325 239 43 0 chr4 166513303 166513395 -17775267 - L1MC1 LINE L1 -4260 2304 2209 255 155 0 17 chr4 166513492 166513550 -17775112 - L1MC1 LINE L1 -4554 2010 1954 * 2015 203 90 27 chr4 166513548 166514444 -17774218 - L1MC1 LINE L1 -4853 1192 578 499 339 50 6 chr4 166514629 166514968 -17773694 - L1MEd LINE L1 -5321 798 445 429 250 40 16 chr4 166515859 166515983 -17772679 + MIR SINE MIR 53 179 -83 306 354 24 57 chr4 166516635 166516847 -17771815 + L2 LINE L2 2637 2841 -473 857 153 23 6 chr4 166516966 166517143 -17771519 - MER53 DNA DNA 0 189 10 221 293 40 73 chr4 166517221 166517371 -17771291 + L2 LINE L2 3169 3313 0 267 343 50 0 chr4 166517804 166517903 -17770759 + L3 LINE CR1 1047 1150 -427 249 263 40 10 chr4 166517915 166518014 -17770648 - MIR SINE MIR -27 235 134 227 313 275 0 chr4 166518130 166518312 -17770350 + L3 LINE CR1 1168 1399 -178 870 291 125 5 chr4 166519867 166520276 -17768386 + LTR16B LTR ERVL 5 462 -2 685 179 126 0 chr4 166521121 166521272 -17767390 + FRAM SINE Alu 4 173 -3 1797 110 4 0 chr4 166521453 166521690 -17766972 - AluSc SINE Alu -16 293 56 2057 66 289 6 chr4 166521748 166522097 -17766565 + LTR7 LTR ERV1 1 448 -2 12790 156 65 39 chr4 166522099 166526052 -17762610 + HERVH LTR ERV1 1 7713 0 2584 75 128 8 chr4 166526052 166526452 -17762210 + LTR7 LTR ERV1 1 448 -2 418 294 110 50 chr4 166527506 166527724 -17760938 + L1ME4a LINE L1 5654 5884 -237 336 238 50 10 chr4 166527779 166527880 -17760782 + L1ME4a LINE L1 5973 6077 -44 1939 144 0 13 chr4 166527892 166528190 -17760472 + AluJo SINE Alu 3 296 -16 375 264 176 45 chr4 166528283 166528681 -17759981 - HAL1 LINE L1 -33 2474 2025 1207 71 0 0 chr4 166528791 166528946 -17759716 + HERV17 LTR ERV1 1251 1405 -7221 9079 68 5 9 chr4 166528960 166530249 -17758413 + HERV17 LTR ERV1 1808 3090 -3806 3038 69 0 0 chr4 166530291 166530682 -17757980 - L1PA5 LINE L1 -4 6150 5760 7054 38 5 2 chr4 166530689 166531563 -17757099 + HERV17 LTR ERV1 3072 3947 -2949 2947 148 33 2 chr4 166531557 166532045 -17756617 + HERV17 LTR ERV1 4594 5096 -2717 * 11601 196 19 12 chr4 166532034 166534363 -17754299 + HERV17 LTR ERV1 5469 7811 -2 931 232 44 13 chr4 166534365 166534727 -17753935 + LTR2 LTR ERV1 3 449 0 24 53 0 0 chr4 166535060 166535098 -17753564 + AT_rich Low_complexity Low_complexity 1 38 0 2203 121 0 0 chr4 166536063 166536352 -17752310 - AluSx SINE Alu -20 292 4 1218 155 49 4 chr4 166536717 166536943 -17751719 - MER21A LTR ERV1 -3 928 693 * 2187 191 148 12 chr4 166536938 166537417 -17751245 - MER21B LTR ERV1 -304 559 10 2138 121 21 34 chr4 166537417 166537797 -17750865 - THE1C LTR MaLR 0 375 1 2187 191 148 12 chr4 166537797 166537809 -17750853 - MER21B LTR ERV1 -853 10 1 3270 104 32 6 chr4 166538130 166538630 -17750032 - LTR10D LTR ERV1 0 513 1 489 241 70 108 chr4 166538976 166539317 -17749345 + LTR35 LTR ERV1 350 677 -2 2306 104 3 3 chr4 166540112 166540421 -17748241 - AluSc SINE Alu 0 309 1 1349 197 47 34 chr4 166540580 166540900 -17747762 - MLT1A1 LTR MaLR -1 364 41 8003 101 3 12 chr4 166541078 166542332 -17746330 + HERVH LTR ERV1 1743 2985 -4728 2452 94 21 0 chr4 166542328 166542700 -17745962 + HERVH LTR ERV1 3140 3519 -4194 * 24 53 0 0 chr4 166542961 166542999 -17745663 + AT_rich Low_complexity Low_complexity 1 38 0 242 326 0 31 chr4 166543202 166543300 -17745362 + MIR3 SINE MIR 102 196 -12 459 157 139 0 chr4 166544548 166544656 -17744006 - MER50 LTR ERV1 -611 123 1 200 214 0 0 chr4 166545236 166545278 -17743384 + CT-rich Low_complexity Low_complexity 2 43 0 656 227 8 0 chr4 166545546 166545674 -17742988 - FLAM_C SINE Alu 0 133 5 23 0 0 0 chr4 166546573 166546596 -17742066 + AT_rich Low_complexity Low_complexity 1 23 0 25 75 0 0 chr4 166546900 166546953 -17741709 + AT_rich Low_complexity Low_complexity 1 53 0 23 0 0 0 chr4 166547551 166547574 -17741088 + AT_rich Low_complexity Low_complexity 1 23 0 401 269 94 76 chr4 166547612 166547668 -17740994 - MLT1H1 LTR MaLR -8 534 480 1989 96 11 4 chr4 166547668 166547940 -17740722 + AluSg SINE Alu 37 310 0 401 269 94 76 chr4 166547940 166548354 -17740308 - MLT1H1 LTR MaLR -62 480 82 2047 112 0 11 chr4 166548354 166548668 -17739994 - AluSx SINE Alu 0 311 1 383 243 160 11 chr4 166549087 166549268 -17739394 - L1ME LINE L1 -303 5818 5611 279 0 0 0 chr4 166549303 166549334 -17739328 + (TA)n Simple_repeat Simple_repeat 1 31 0 183 129 0 0 chr4 166549466 166549497 -17739165 + (CG)n Simple_repeat Simple_repeat 2 32 0 33 43 0 0 chr4 166549683 166549730 -17738932 + GC_rich Low_complexity Low_complexity 1 47 0 33091 41 31 3 chr4 166549837 166554208 -17734454 - L1P LINE L1 -1640 4506 13 716 153 51 40 chr4 166554224 166554400 -17734262 + L1MA9 LINE L1 6135 6312 0 283 299 68 0 chr4 166554711 166554858 -17733804 + L1ME1 LINE L1 3605 3761 -2385 1128 250 71 44 chr4 166554906 166555893 -17732769 + L1ME1 LINE L1 4169 5168 -978 2179 236 52 59 chr4 166555934 166556131 -17732531 + L1ME1 LINE L1 5254 5451 -715 2741 142 12 0 chr4 166556131 166556554 -17732108 + MSTA LTR MaLR 1 428 0 2179 236 52 59 chr4 166556554 166557208 -17731454 + L1ME1 LINE L1 5451 6099 -67 452 301 115 13 chr4 166557355 166557642 -17731020 + L1M4 LINE L1 5127 5452 -726 919 260 58 40 chr4 166557643 166557970 -17730692 + MLT1E LTR MaLR 261 593 0 305 227 15 0 chr4 166557971 166558037 -17730625 + MIR SINE MIR 110 176 -86 370 326 147 0 chr4 166558625 166558815 -17729847 + MER115 DNA AcHobo 152 369 -324 545 298 54 5 chr4 166558883 166559088 -17729574 + MER115 DNA AcHobo 465 679 -14 429 271 98 8 chr4 166559297 166559419 -17729243 - L2 LINE L2 -1 3312 3180 21 0 0 0 chr4 166560796 166560817 -17727845 + AT_rich Low_complexity Low_complexity 1 21 0 723 221 40 16 chr4 166560886 166561135 -17727527 - L1M4 LINE L1 -3173 2973 2719 879 104 0 8 chr4 166561551 166561676 -17726986 - AluSg/x SINE Alu -15 297 174 22 0 0 0 chr4 166561765 166561787 -17726875 + AT_rich Low_complexity Low_complexity 1 22 0 260 235 106 12 chr4 166562022 166562107 -17726555 - MIR SINE MIR -14 248 156 206 131 12 60 chr4 166562621 166562705 -17725957 + (CAATA)n Simple_repeat Simple_repeat 5 84 0 216 171 13 53 chr4 166562902 166562978 -17725684 + (TCTA)n Simple_repeat Simple_repeat 1 73 0 279 351 21 0 chr4 166563087 166563181 -17725481 + L2 LINE L2 2748 2843 -471 1203 273 66 13 chr4 166563184 166563576 -17725086 + L2 LINE L2 1307 1719 -1595 25 0 0 0 chr4 166563666 166563691 -17724971 + AT_rich Low_complexity Low_complexity 1 25 0 5707 98 11 2 chr4 166563691 166564857 -17723805 - L1PA14 LINE L1 -3 6158 4949 1626 211 34 0 chr4 166564883 166565233 -17723429 - L1MA4 LINE L1 -130 6170 5809 509 239 15 0 chr4 166565230 166565364 -17723298 + L1MA4 LINE L1 6160 6295 -5 * 739 305 143 12 chr4 166565394 166565715 -17722947 + L2 LINE L2 1738 2100 -1214 363 203 127 68 chr4 166566553 166566671 -17721991 + FLAM_A SINE Alu 1 125 -8 1800 180 0 3 chr4 166568619 166568919 -17719743 + AluJo SINE Alu 1 299 -13 2050 105 7 27 chr4 166569373 166569669 -17718993 - AluSx SINE Alu -22 290 1 23 0 0 0 chr4 166570473 166570496 -17718166 + AT_rich Low_complexity Low_complexity 1 23 0 425 273 107 51 chr4 166571671 166571924 -17716738 - L3 LINE CR1 -380 1197 931 1834 164 0 10 chr4 166571946 166572238 -17716424 + AluJo SINE Alu 3 291 -21 2544 142 50 89 chr4 166572329 166572419 -17716243 + MER4E LTR ERV1 1 93 -673 1941 70 26 4 chr4 166572419 166572692 -17715970 + AluY SINE Alu 3 281 -30 2544 142 50 89 chr4 166572692 166573230 -17715432 + MER4E LTR ERV1 93 761 -5 2182 60 11 7 chr4 166573873 166574195 -17714467 + AluY SINE Alu 1 323 0 24 0 0 0 chr4 166577082 166577106 -17711556 + AT_rich Low_complexity Low_complexity 1 24 0 28 71 0 0 chr4 166577581 166577637 -17711025 + AT_rich Low_complexity Low_complexity 1 56 0 23 54 0 0 chr4 166578486 166578523 -17710139 + AT_rich Low_complexity Low_complexity 1 37 0 27 0 0 0 chr4 166578792 166578819 -17709843 + AT_rich Low_complexity Low_complexity 1 27 0 311 245 104 120 chr4 166579641 166579833 -17708829 + MER5A DNA MER1_type 1 189 0 1842 191 31 3 chr4 166580008 166580363 -17708299 + MLT1A1 LTR MaLR 1 365 0 673 334 64 15 chr4 166580478 166580600 -17708062 - L2 LINE L2 -488 2826 2711 4438 141 22 71 chr4 166580600 166582165 -17706497 + L1PA15 LINE L1 4640 6164 -1 673 334 64 15 chr4 166582165 166582371 -17706291 - L2 LINE L2 -603 2711 2482 3439 168 6 14 chr4 166584897 166585518 -17703144 + L1PB4 LINE L1 5534 6149 -7 30 27 0 0 chr4 166586748 166586785 -17701877 + AT_rich Low_complexity Low_complexity 1 37 0 207 0 0 0 chr4 166586838 166586861 -17701801 + (TG)n Simple_repeat Simple_repeat 2 24 0 236 161 18 18 chr4 166586871 166586927 -17701735 + (TA)n Simple_repeat Simple_repeat 1 56 0 238 264 46 0 chr4 166586933 166587020 -17701642 - L1MC4 LINE L1 -1337 6705 6615 211 130 0 109 chr4 166588045 166588091 -17700571 - MIR SINE MIR 0 262 222 383 364 0 0 chr4 166588135 166588256 -17700406 - MIR SINE MIR -133 129 9 23 54 0 0 chr4 166588347 166588384 -17700278 + AT_rich Low_complexity Low_complexity 1 37 0 26 0 0 0 chr4 166589469 166589495 -17699167 + AT_rich Low_complexity Low_complexity 1 26 0 346 318 36 18 chr4 166590188 166590298 -17698364 + MIR SINE MIR 9 120 -142 1728 319 113 16 chr4 166590321 166590761 -17697901 + L2 LINE L2 313 709 -2605 794 209 128 11 chr4 166590761 166590948 -17697714 - MER3 DNA MER1_type 0 209 1 1728 319 113 16 chr4 166590948 166591354 -17697308 + L2 LINE L2 709 1241 -2073 638 271 113 21 chr4 166591365 166591797 -17696865 - L1ME LINE L1 -5079 991 520 261 0 0 0 chr4 166591842 166591871 -17696791 + (TC)n Simple_repeat Simple_repeat 2 30 0 270 171 9 153 chr4 166592170 166592281 -17696381 - L1ME3 LINE L1 -100 6062 5968 494 221 0 41 chr4 166592467 166592589 -17696073 - L1ME3 LINE L1 -242 5928 5812 225 329 12 0 chr4 166592594 166592676 -17695986 + L2 LINE L2 1828 1910 -1404 536 0 16 0 chr4 166592898 166592962 -17695700 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 31 44 0 0 chr4 166593022 166593067 -17695595 + AT_rich Low_complexity Low_complexity 1 45 0 229 200 22 0 chr4 166594470 166594515 -17694147 + (TG)n Simple_repeat Simple_repeat 1 46 0 1718 208 23 11 chr4 166594852 166595203 -17693459 - MLT1A1 LTR MaLR -10 355 1 477 284 52 89 chr4 166595278 166595549 -17693113 + MLT1J LTR MaLR 216 476 -35 620 281 18 37 chr4 166596447 166596664 -17691998 + L2 LINE L2 3101 3313 0 180 224 102 0 chr4 166597851 166597900 -17690762 - L2 LINE L2 -10 3303 3250 31 0 0 0 chr4 166598670 166598701 -17689961 + AT_rich Low_complexity Low_complexity 1 31 0 2150 122 48 20 chr4 166598702 166599055 -17689607 + THE1B LTR MaLR 2 364 0 450 83 0 0 chr4 166600176 166600248 -17688414 + (TTTA)n Simple_repeat Simple_repeat 2 73 0 2115 113 3 0 chr4 166600252 166600534 -17688128 - AluSg SINE Alu -26 284 2 24 0 0 0 chr4 166600827 166600851 -17687811 + AT_rich Low_complexity Low_complexity 1 24 0 187 279 0 0 chr4 166601038 166601081 -17687581 - L2 LINE L2 -35 3278 3236 1320 302 33 84 chr4 166601084 166601836 -17686826 - MER21B LTR ERV1 -149 714 1 263 342 13 0 chr4 166602082 166602161 -17686501 - MIR SINE MIR -87 121 42 3544 170 18 28 chr4 166602590 166603271 -17685391 - MER50 LTR ERV1 -22 712 39 308 223 0 17 chr4 166603399 166603494 -17685168 - L1P5 LINE L1 -660 5494 5405 306 148 0 0 chr4 166603713 166603767 -17684895 + (TCCCC)n Simple_repeat Simple_repeat 3 56 0 332 300 62 25 chr4 166604892 166605052 -17683610 + MIR3 SINE MIR 32 197 -11 416 100 0 0 chr4 166605466 166605526 -17683136 + AluJ/FLAM SINE Alu 11 70 -242 25 51 0 0 chr4 166606508 166606547 -17682115 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr4 166606953 166606982 -17681680 + AT_rich Low_complexity Low_complexity 1 29 0 2066 199 13 14 chr4 166607211 166607813 -17680849 - L1PA15-16 LINE L1 -3503 3346 2743 2511 101 16 16 chr4 166607813 166608188 -17680474 + THE1C LTR MaLR 1 375 0 6463 123 54 193 chr4 166608188 166610024 -17678638 + THE1C-int LTR MaLR 1 1580 0 2272 143 11 16 chr4 166610024 166610401 -17678261 + THE1C LTR MaLR 1 375 0 7136 134 34 7 chr4 166610402 166611652 -17677010 - L1PA15-16 LINE L1 -4103 2746 1463 2284 159 130 5 chr4 166611651 166612060 -17676602 - L1PA15-16 LINE L1 -6389 460 1 * 970 195 181 0 chr4 166612063 166612268 -17676394 - L1M2 LINE L1 -644 5656 5415 5267 254 67 22 chr4 166612269 166615028 -17673634 - L1MEc LINE L1 -825 6132 3213 313 200 27 45 chr4 166615030 166615140 -17673522 - L1MEc LINE L1 -3802 3155 3065 405 279 120 28 chr4 166615174 166615607 -17673055 - L1MEc LINE L1 -3904 3055 2583 25 31 0 0 chr4 166615707 166615739 -17672923 + AT_rich Low_complexity Low_complexity 1 32 0 1206 214 35 45 chr4 166615742 166616032 -17672630 + AluJb SINE Alu 1 287 -25 180 0 0 0 chr4 166616033 166616053 -17672609 + (CTA)n Simple_repeat Simple_repeat 1 20 0 1640 250 136 11 chr4 166616064 166616629 -17672033 - L1MEc LINE L1 -5257 1602 967 1215 288 87 22 chr4 166616633 166617217 -17671445 + L1MC4 LINE L1 6452 7073 -969 270 236 7 0 chr4 166617218 166617295 -17671367 + L1MC4a LINE L1 6931 6994 -814 28 86 0 0 chr4 166617450 166617520 -17671142 + AT_rich Low_complexity Low_complexity 1 70 0 22 0 0 0 chr4 166618161 166618183 -17670479 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 166618380 166618408 -17670254 + AT_rich Low_complexity Low_complexity 1 28 0 255 399 83 10 chr4 166618743 166618936 -17669726 + MIR SINE MIR 18 224 -38 * 356 300 60 0 chr4 166618934 166619034 -17669628 - L2 LINE L2 -1 3312 3207 1547 166 10 31 chr4 166619380 166619670 -17668992 - AluJo SINE Alu -12 300 17 22 56 0 0 chr4 166619795 166619831 -17668831 + AT_rich Low_complexity Low_complexity 1 36 0 1656 122 44 7 chr4 166619898 166620168 -17668494 - AluSg SINE Alu -10 300 21 262 293 91 0 chr4 166621088 166621187 -17667475 - L2 LINE L2 -1 3312 3205 527 288 168 53 chr4 166621875 166622362 -17666300 - MLT1G1 LTR MaLR -12 583 1 22 56 0 0 chr4 166622550 166622586 -17666076 + AT_rich Low_complexity Low_complexity 1 36 0 298 267 59 0 chr4 166622594 166622695 -17665967 - MIR SINE MIR -46 216 110 2026 190 21 8 chr4 166622698 166623082 -17665580 - MSTB LTR MaLR -2 424 36 22 0 0 0 chr4 166623933 166623955 -17664707 + AT_rich Low_complexity Low_complexity 1 22 0 890 203 132 96 chr4 166625420 166625858 -17662804 + MLT1C LTR MaLR 6 459 -8 261 0 0 0 chr4 166626103 166626132 -17662530 + (CA)n Simple_repeat Simple_repeat 2 30 0 315 0 0 0 chr4 166626352 166626387 -17662275 + (CA)n Simple_repeat Simple_repeat 1 35 0 545 272 29 32 chr4 166626480 166626726 -17661936 - L1MEc LINE L1 -3568 2647 2403 12983 173 32 14 chr4 166626726 166629075 -17659587 - Tigger2 DNA MER2_type 0 2718 327 309 246 51 8 chr4 166629317 166629435 -17659227 - L1MEc LINE L1 -4735 1661 1539 23 78 0 0 chr4 166629536 166629587 -17659075 + AT_rich Low_complexity Low_complexity 1 51 0 25 51 0 0 chr4 166629699 166629738 -17658924 + AT_rich Low_complexity Low_complexity 1 39 0 349 301 96 103 chr4 166630026 166630494 -17658168 - L2 LINE L2 -759 2555 2091 6971 196 86 55 chr4 166630522 166632224 -17656438 + MER52A LTR ERV1 1 1755 0 445 133 0 56 chr4 166632336 166632426 -17656236 + L1PA16 LINE L1 5108 5192 -954 5680 135 19 0 chr4 166632526 166633461 -17655201 + L1PA16 LINE L1 5214 6165 -1 1841 145 3 0 chr4 166633732 166634022 -17654640 + AluSg SINE Alu 1 291 -19 284 386 94 4 chr4 166634202 166634456 -17654206 - L2 LINE L2 -1905 1409 1133 217 365 178 24 chr4 166634526 166635239 -17653423 - L2 LINE L2 -2363 951 129 418 318 95 5 chr4 166635291 166635502 -17653160 - L2 LINE L2 -74 3239 3010 * 438 308 61 20 chr4 166635489 166635687 -17652975 - L2 LINE L2 -439 2875 2670 684 296 135 33 chr4 166635703 166635884 -17652778 - L2 LINE L2 -772 2542 2381 1980 109 11 7 chr4 166635884 166636194 -17652468 - AluSq SINE Alu 0 315 5 684 296 135 33 chr4 166636194 166636470 -17652192 - L2 LINE L2 -933 2381 2036 27 0 0 0 chr4 166637709 166637736 -17650926 + AT_rich Low_complexity Low_complexity 1 27 0 24 53 0 0 chr4 166637828 166637866 -17650796 + AT_rich Low_complexity Low_complexity 1 38 0 7841 21 0 1 chr4 166637887 166639577 -17649085 - L1PA2 LINE L1 0 6155 4465 417 39 0 0 chr4 166639906 166639957 -17648705 + (TA)n Simple_repeat Simple_repeat 1 51 0 255 275 87 0 chr4 166640300 166640369 -17648293 + MER57-int LTR ERV1 1040 1114 -3822 433 272 60 13 chr4 166640387 166640599 -17648063 + MER57-int LTR ERV1 2934 4158 -1723 2327 240 62 66 chr4 166640607 166641836 -17646826 + MER57-int LTR ERV1 2645 5749 -1494 541 288 28 68 chr4 166642054 166642603 -17646059 + MER57-int LTR ERV1 2365 6058 -1479 1181 327 38 37 chr4 166643536 166644163 -17644499 + MER57-int LTR ERV1 6518 7145 -392 731 241 57 137 chr4 166644175 166644599 -17644063 + MER57A LTR ERV1 13 403 0 2170 117 0 0 chr4 166645150 166645450 -17643212 + AluSx SINE Alu 5 304 -8 362 309 129 6 chr4 166646635 166646813 -17641849 + L1MEc LINE L1 1539 1738 -4658 180 250 96 0 chr4 166648309 166648361 -17640301 - L2 LINE L2 -650 2664 2608 277 371 46 25 chr4 166648624 166648904 -17639758 - L2 LINE L2 0 3313 3028 21 0 0 0 chr4 166649764 166649785 -17638877 + AT_rich Low_complexity Low_complexity 1 21 0 31 58 0 0 chr4 166649992 166650044 -17638618 + AT_rich Low_complexity Low_complexity 1 52 0 907 289 138 34 chr4 166650978 166651545 -17637117 + L1MC4a LINE L1 5273 5898 -1910 3449 173 40 47 chr4 166651741 166652531 -17636131 + LTR1 LTR ERV1 1 785 0 708 270 68 53 chr4 166652765 166653225 -17635437 - HsTC2 DNA Tc2 -253 1645 1003 390 233 53 87 chr4 166653357 166653563 -17635099 - HsTC2 DNA Tc2 -1698 200 2 23 54 0 0 chr4 166653615 166653652 -17635010 + AT_rich Low_complexity Low_complexity 1 37 0 1748 144 12 3 chr4 166653761 166654140 -17634522 - L1PA13 LINE L1 -4383 2414 2022 26 64 0 0 chr4 166654520 166654567 -17634095 + AT_rich Low_complexity Low_complexity 1 47 0 259 254 0 15 chr4 166654592 166654659 -17634003 + CT-rich Low_complexity Low_complexity 3 68 0 21 0 0 0 chr4 166656962 166656983 -17631679 + AT_rich Low_complexity Low_complexity 1 21 0 791 205 210 11 chr4 166657039 166657392 -17631270 - Charlie1b DNA MER1_type 0 523 101 31 68 0 0 chr4 166659443 166659502 -17629160 + AT_rich Low_complexity Low_complexity 1 59 0 1107 278 94 12 chr4 166659562 166659986 -17628676 - L1ME1 LINE L1 -25 6141 5683 822 254 42 39 chr4 166659993 166660335 -17628327 - L1MDa LINE L1 -4491 2050 1401 29 0 0 0 chr4 166660799 166660828 -17627834 + AT_rich Low_complexity Low_complexity 1 29 0 266 304 0 22 chr4 166661035 166661127 -17627535 - L1MDa LINE L1 -5918 612 523 180 216 0 0 chr4 166661362 166661413 -17627249 + (TA)n Simple_repeat Simple_repeat 1 51 0 21 0 0 0 chr4 166662165 166662186 -17626476 + AT_rich Low_complexity Low_complexity 1 21 0 1526 216 0 3 chr4 166662836 166663132 -17625530 - AluJo SINE Alu -17 295 1 26 0 0 0 chr4 166663730 166663756 -17624906 + AT_rich Low_complexity Low_complexity 1 26 0 183 156 0 0 chr4 166664441 166664473 -17624189 + GA-rich Low_complexity Low_complexity 1 32 0 7549 140 11 9 chr4 166665211 166665264 -17623398 + L1PA8A LINE L1 728 779 -6219 207 0 0 0 chr4 166665264 166665287 -17623375 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7549 140 11 9 chr4 166665287 166666436 -17622226 + L1PA8A LINE L1 779 2264 -4734 4583 206 6 17 chr4 166666482 166667541 -17621121 + L1PA8A LINE L1 2390 3436 -4148 7266 127 44 5 chr4 166667541 166669457 -17619205 + L1PA8A LINE L1 5593 7569 0 27 49 0 0 chr4 166669468 166669509 -17619153 + AT_rich Low_complexity Low_complexity 1 41 0 28 29 0 0 chr4 166669809 166669844 -17618818 + AT_rich Low_complexity Low_complexity 1 35 0 2350 314 89 27 chr4 166669896 166671054 -17617608 + L2 LINE L2 1127 2356 -958 1872 172 61 30 chr4 166671087 166671619 -17617043 - MLT2A2 LTR ERVL -8 546 1 932 318 75 20 chr4 166671619 166672263 -17616399 + L2 LINE L2 2623 3307 -6 27 29 0 0 chr4 166673268 166673302 -17615360 + AT_rich Low_complexity Low_complexity 1 34 0 1012 246 69 0 chr4 166674075 166674364 -17614298 - L1P3 LINE L1 -4792 1669 1361 5687 96 16 7 chr4 166674365 166675192 -17613470 + L1PA11 LINE L1 5341 6174 0 410 276 16 24 chr4 166675340 166675467 -17613195 + MIR SINE MIR 29 154 -108 6898 67 0 0 chr4 166675835 166677101 -17611561 - L1PA6 LINE L1 -4 6150 4883 26 50 0 0 chr4 166677219 166677259 -17611403 + AT_rich Low_complexity Low_complexity 1 40 0 296 146 49 8 chr4 166677537 166677544 -17611118 + (TA)n Simple_repeat Simple_repeat 1 6 -122 225 0 0 0 chr4 166677544 166677569 -17611093 + (CA)n Simple_repeat Simple_repeat 2 26 0 296 146 49 8 chr4 166677569 166677684 -17610978 + (TA)n Simple_repeat Simple_repeat 6 128 0 300 135 27 153 chr4 166677715 166677826 -17610836 + L1MCa LINE L1 2006 2102 -4324 816 256 31 0 chr4 166677845 166678036 -17610626 + MER58A DNA MER1_type 26 222 -2 253 191 0 0 chr4 166678153 166678200 -17610462 + MLT1G LTR MaLR 544 590 0 334 279 108 8 chr4 166678524 166678653 -17610009 + L1MC5 LINE L1 7815 7956 -5 333 299 37 19 chr4 166679236 166679343 -17609319 - L2 LINE L2 -285 3028 2920 1375 233 58 76 chr4 166681670 166681788 -17606874 + MLT1E3 LTR MaLR 1 120 -504 2169 130 37 6 chr4 166681788 166682141 -17606521 + THE1B LTR MaLR 1 364 0 9938 119 36 7 chr4 166682141 166683676 -17604986 + THE1B-int LTR MaLR 1 1580 0 2283 126 25 8 chr4 166683676 166684034 -17604628 + THE1B LTR MaLR 1 364 0 1375 233 58 76 chr4 166684034 166684499 -17604163 + MLT1E3 LTR MaLR 117 565 -59 22 56 0 0 chr4 166684499 166684535 -17604127 + AT_rich Low_complexity Low_complexity 1 36 0 253 286 0 0 chr4 166684809 166684872 -17603790 - L1MC/D LINE L1 -1951 5857 5795 409 303 84 7 chr4 166685052 166685266 -17603396 - L1MC/D LINE L1 -467 5654 5419 2113 194 50 4 chr4 166685546 166686006 -17602656 - L1MB2 LINE L1 -2 6169 5689 292 218 0 0 chr4 166686014 166686069 -17602593 + MLT1E3 LTR MaLR 598 652 -2 21 0 0 0 chr4 166686648 166686669 -17601993 + AT_rich Low_complexity Low_complexity 1 21 0 263 91 0 23 chr4 166687132 166687176 -17601486 + (CA)n Simple_repeat Simple_repeat 1 43 0 2153 96 0 10 chr4 166687781 166688084 -17600578 + AluSx SINE Alu 1 300 -12 235 284 233 18 chr4 166688958 166689233 -17599429 + L1ME3A LINE L1 4763 5096 -1050 1048 115 0 7 chr4 166689271 166689419 -17599243 + AluSg SINE Alu 1 147 -163 2051 120 3 3 chr4 166689467 166689759 -17598903 + AluSg SINE Alu 1 292 -18 1368 291 64 30 chr4 166689795 166690661 -17598001 + L1ME3A LINE L1 5173 6097 -73 2262 94 0 3 chr4 166690693 166690991 -17597671 - AluY SINE Alu -14 297 1 1716 179 76 52 chr4 166692702 166693110 -17595552 - L1MA9 LINE L1 -74 6238 5821 189 0 0 0 chr4 166693130 166693151 -17595511 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 396 59 0 0 chr4 166693150 166693201 -17595461 + (TA)n Simple_repeat Simple_repeat 2 52 0 340 280 120 48 chr4 166693625 166693875 -17594787 + L1ME3 LINE L1 4935 5202 -944 203 96 77 39 chr4 166693881 166693933 -17594729 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 239 241 13 0 chr4 166693956 166694035 -17594627 + L1ME3 LINE L1 5255 5334 -828 1070 315 68 14 chr4 166694092 166694590 -17594072 + MER90 LTR ERV1 45 569 -6 308 272 158 0 chr4 166694625 166694783 -17593879 + L1ME3 LINE L1 5373 5555 -607 329 259 46 8 chr4 166694784 166694801 -17593861 - L1MA10 LINE L1 0 6334 6318 2090 262 78 17 chr4 166694801 166695580 -17593082 - L1ME1 LINE L1 -9 6157 5331 1068 250 108 12 chr4 166695576 166695976 -17592686 + L1ME3 LINE L1 5725 6162 0 * 26 64 0 0 chr4 166696160 166696207 -17592455 + AT_rich Low_complexity Low_complexity 1 47 0 1872 52 0 4 chr4 166696972 166697201 -17591461 - AluY SINE Alu -13 298 71 27 49 0 0 chr4 166697288 166697329 -17591333 + AT_rich Low_complexity Low_complexity 1 41 0 374 294 41 42 chr4 166697998 166698208 -17590454 + MLT1H LTR MaLR 1 256 -293 346 272 82 7 chr4 166698302 166698449 -17590213 + MLT1H LTR MaLR 373 530 -37 635 343 139 36 chr4 166698602 166699179 -17589483 + L2 LINE L2 2113 2748 -566 1967 55 8 27 chr4 166699359 166699615 -17589047 + AluY SINE Alu 40 290 -21 25 75 0 0 chr4 166701054 166701107 -17587555 + AT_rich Low_complexity Low_complexity 1 53 0 552 330 71 39 chr4 166701140 166701476 -17587186 - L2 LINE L2 0 3313 2967 1139 312 118 15 chr4 166701619 166702155 -17586507 - L2 LINE L2 -568 2746 2156 29 28 0 0 chr4 166702184 166702220 -17586442 + AT_rich Low_complexity Low_complexity 1 36 0 1106 287 186 19 chr4 166702622 166703134 -17585528 + MLT2E LTR ERVL 32 628 0 1525 151 82 55 chr4 166703434 166703799 -17584863 + THE1C LTR MaLR 1 375 0 1538 204 40 38 chr4 166705885 166706258 -17582404 - MLT1A2 LTR MaLR 0 374 1 1092 196 0 0 chr4 166706576 166706765 -17581897 + AluJo SINE Alu 102 290 -22 376 300 82 53 chr4 166707313 166707483 -17581179 + MIR SINE MIR 12 186 -76 353 281 112 69 chr4 166707974 166708494 -17580168 + HAL1b LINE L1 114 655 -693 1525 254 83 52 chr4 166708848 166709609 -17579053 + L1MC5 LINE L1 6554 7338 -623 386 221 43 6 chr4 166710201 166710364 -17578298 + (TA)n Simple_repeat Simple_repeat 2 170 0 291 28 0 0 chr4 166710447 166710483 -17578179 + (CA)n Simple_repeat Simple_repeat 1 36 0 1542 158 97 19 chr4 166710664 166710975 -17577687 + MER44D DNA MER2_type 2 606 -3 191 221 118 59 chr4 166711861 166711929 -17576733 + L2 LINE L2 3210 3281 -32 21 82 0 0 chr4 166712744 166712793 -17575869 + AT_rich Low_complexity Low_complexity 1 49 0 236 336 30 8 chr4 166713583 166713714 -17574948 - L2 LINE L2 -1609 1705 1572 25 31 0 0 chr4 166714295 166714327 -17574335 + AT_rich Low_complexity Low_complexity 1 32 0 1995 250 104 42 chr4 166714546 166714706 -17573956 + L1MB7 LINE L1 5254 5403 -775 189 0 0 0 chr4 166714706 166714727 -17573935 + (CAT)n Simple_repeat Simple_repeat 2 22 0 1995 250 104 42 chr4 166714727 166715241 -17573421 + L1MB7 LINE L1 5403 6034 -144 24 32 0 0 chr4 166715241 166715272 -17573390 + AT_rich Low_complexity Low_complexity 1 31 0 1995 250 104 42 chr4 166715272 166715425 -17573237 + L1MB7 LINE L1 6034 6176 -2 25 0 0 0 chr4 166715794 166715819 -17572843 + AT_rich Low_complexity Low_complexity 1 25 0 246 179 18 0 chr4 166716109 166716165 -17572497 + (TA)n Simple_repeat Simple_repeat 2 58 0 586 206 62 115 chr4 166716530 166716904 -17571758 + L1M4 LINE L1 4179 4532 -1614 605 374 69 14 chr4 166717087 166717593 -17571069 - ERVL LTR ERVL -3739 2025 1492 582 251 123 0 chr4 166717698 166717885 -17570777 - MER58C DNA MER1_type -5 210 1 23 0 0 0 chr4 166718746 166718769 -17569893 + AT_rich Low_complexity Low_complexity 1 23 0 70 41 0 0 chr4 166719768 166719866 -17568796 + AT_rich Low_complexity Low_complexity 1 98 0 345 190 34 39 chr4 166719882 166720061 -17568601 + (TA)n Simple_repeat Simple_repeat 2 179 0 1858 164 21 0 chr4 166720933 166721220 -17567442 - AluSg SINE Alu -17 293 1 1645 323 39 5 chr4 166721357 166722096 -17566566 + L1ME3A LINE L1 5373 6136 -34 230 296 0 0 chr4 166722134 166722188 -17566474 - L2 LINE L2 0 3272 3219 2213 106 0 3 chr4 166722192 166722495 -17566167 + AluSg SINE Alu 1 302 -8 185 271 21 0 chr4 166722569 166722617 -17566045 - L2 LINE L2 -2 3311 3263 302 387 21 5 chr4 166722893 166723084 -17565578 - L2 LINE L2 -419 2895 2702 810 216 11 11 chr4 166723125 166723306 -17565356 - MER58A DNA MER1_type -1 223 43 512 169 25 0 chr4 166723997 166724115 -17564547 + L1MA7 LINE L1 6170 6290 -1 635 193 100 20 chr4 166725197 166725347 -17563315 - MER89 LTR ERV1 -1 558 397 443 256 57 98 chr4 166725355 166725601 -17563061 - MER89-int LTR ERV1 -753 6048 5813 288 113 189 0 chr4 166725699 166725752 -17562910 - MER89-int LTR ERV1 -1026 5775 5713 876 203 64 77 chr4 166725752 166726063 -17562599 - MLT1D LTR MaLR -198 307 1 2412 216 50 104 chr4 166726063 166727026 -17561636 - MER89-int LTR ERV1 -4528 2273 1363 882 265 57 57 chr4 166727096 166727432 -17561230 - MER89-int LTR ERV1 -6456 345 10 934 280 100 0 chr4 166727442 166727753 -17560909 - MER89 LTR ERV1 0 559 218 444 328 22 26 chr4 166727782 166728011 -17560651 - ERVL LTR ERVL -3291 2473 2246 529 300 8 3 chr4 166730239 166730443 -17558219 + L1MC4a LINE L1 6446 6614 -1194 1666 254 111 0 chr4 166730462 166731010 -17557652 + L1MC4 LINE L1 7070 7678 -364 209 289 0 0 chr4 166731103 166731155 -17557507 + (CATATA)n Simple_repeat Simple_repeat 1 52 0 1103 170 43 17 chr4 166731235 166731465 -17557197 + LTR39 LTR ERV1 1 236 -547 542 204 58 29 chr4 166732386 166732523 -17556139 + FLAM_C SINE Alu 3 143 0 22 70 0 0 chr4 166734341 166734384 -17554278 + AT_rich Low_complexity Low_complexity 1 43 0 254 281 12 0 chr4 166734878 166734960 -17553702 + (TA)n Simple_repeat Simple_repeat 1 83 0 2040 122 3 10 chr4 166735710 166736022 -17552640 + AluSx SINE Alu 2 311 -1 292 376 25 25 chr4 166736550 166736707 -17551955 - L3 LINE CR1 -54 1523 1367 397 236 8 71 chr4 166736757 166736884 -17551778 - L2 LINE L2 -56 3257 3139 347 368 65 58 chr4 166737603 166738174 -17550488 - L1MEd LINE L1 -5540 579 5 219 69 0 0 chr4 166738395 166738424 -17550238 + (CAAAC)n Simple_repeat Simple_repeat 4 32 0 328 362 82 33 chr4 166738618 166738947 -17549715 - L3 LINE CR1 -265 1312 968 25 75 0 0 chr4 166738996 166739049 -17549613 + AT_rich Low_complexity Low_complexity 1 53 0 1631 215 17 17 chr4 166739403 166739761 -17548901 + MLT1A1 LTR MaLR 6 363 -2 189 74 0 0 chr4 166740035 166740062 -17548600 + (A)n Simple_repeat Simple_repeat 1 27 0 2259 143 11 3 chr4 166742161 166742518 -17546144 - L1PB1 LINE L1 -7 6144 5785 3214 144 14 17 chr4 166742519 166743218 -17545444 - L1PB1 LINE L1 -422 5729 5032 574 252 55 74 chr4 166743197 166743614 -17545048 - L1MCc LINE L1 -2958 3983 3575 * 1386 251 119 37 chr4 166743635 166743944 -17544718 - L1MCc LINE L1 -4335 2787 2505 255 60 60 0 chr4 166743944 166743994 -17544668 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 1386 251 119 37 chr4 166743994 166745112 -17543550 - L1MCc LINE L1 -4617 2505 1047 448 253 44 13 chr4 166745167 166745325 -17543337 - L1MCc LINE L1 -5464 959 797 792 286 98 43 chr4 166745401 166745940 -17542722 - L1MCc LINE L1 -5842 581 13 624 358 100 32 chr4 166747972 166748472 -17540190 + L2 LINE L2 165 698 -2616 188 289 60 12 chr4 166748471 166748554 -17540108 + L3 LINE CR1 624 710 -867 * 763 347 105 24 chr4 166748851 166749591 -17539071 + L2 LINE L2 727 1526 -1788 329 94 19 0 chr4 166749592 166749645 -17539017 + Alu SINE Alu 247 300 0 259 307 154 50 chr4 166749656 166749936 -17538726 + L2 LINE L2 1560 1868 -1446 792 350 68 8 chr4 166750012 166750381 -17538281 + L2 LINE L2 2175 2565 -749 275 273 31 12 chr4 166750752 166750913 -17537749 + (TA)n Simple_repeat Simple_repeat 2 165 0 857 261 157 34 chr4 166750914 166751327 -17537335 + L1MC4 LINE L1 6805 7268 -774 763 319 97 17 chr4 166751420 166751824 -17536838 + L1MC4 LINE L1 7469 7904 -138 375 181 53 43 chr4 166752973 166753067 -17535595 + MIR SINE MIR 119 213 -49 7085 23 0 0 chr4 166753409 166754235 -17534427 + L1PA4 LINE L1 5330 6155 0 256 301 36 0 chr4 166754463 166754546 -17534116 - L3 LINE CR1 -882 695 610 300 293 22 1 chr4 166755152 166755254 -17533408 - MIR SINE MIR -66 142 40 293 333 44 44 chr4 166755503 166755662 -17533000 + LTR16C LTR ERVL 88 246 -245 351 269 84 24 chr4 166756106 166756273 -17532389 - L1M4 LINE L1 -2932 3214 3038 37 23 0 0 chr4 166756759 166756803 -17531859 + AT_rich Low_complexity Low_complexity 1 44 0 194 250 21 0 chr4 166757863 166757911 -17530751 + L2 LINE L2 2282 2330 -984 1473 115 32 0 chr4 166758089 166758306 -17530356 - MER30 DNA MER1_type 0 230 7 183 129 0 0 chr4 166759548 166759579 -17529083 + (TG)n Simple_repeat Simple_repeat 1 31 0 21 36 0 0 chr4 166760419 166760447 -17528215 + AT_rich Low_complexity Low_complexity 1 28 0 3969 139 10 8 chr4 166760770 166761441 -17527221 - L1PA11 LINE L1 -1419 4727 4055 6205 110 10 0 chr4 166761448 166762896 -17525766 + L1PA11 LINE L1 4718 6174 0 183 371 112 9 chr4 166763968 166764084 -17524578 - L2 LINE L2 -534 2780 2653 493 313 49 29 chr4 166765355 166765598 -17523064 - MIR SINE MIR -13 249 2 611 128 0 0 chr4 166765910 166766004 -17522658 - AluSc SINE Alu -178 131 38 1883 208 60 5 chr4 166766805 166767185 -17521477 - MER54A LTR ERVL -493 408 8 21 0 0 0 chr4 166767368 166767389 -17521273 + AT_rich Low_complexity Low_complexity 1 21 0 416 298 61 59 chr4 166768776 166769097 -17519565 + L1MEd LINE L1 691 1015 -5104 2234 106 0 6 chr4 166769097 166769408 -17519254 + AluSg1 SINE Alu 1 309 0 416 298 61 59 chr4 166769408 166769647 -17519015 + L1MEd LINE L1 1015 1252 -4867 256 305 116 0 chr4 166770738 166770833 -17517829 + MIR SINE MIR 26 131 -131 25 0 0 0 chr4 166771099 166771124 -17517538 + AT_rich Low_complexity Low_complexity 1 25 0 900 285 9 0 chr4 166771165 166771386 -17517276 - MER58A DNA MER1_type 0 224 2 996 263 98 57 chr4 166771575 166771729 -17516933 + HsTC2a DNA Tc2 3 149 -1751 1778 175 76 15 chr4 166771729 166772072 -17516590 - THE1B LTR MaLR 0 364 1 11680 92 2 3 chr4 166772072 166773654 -17515008 - THE1B-int LTR MaLR 0 1580 1 1858 143 77 40 chr4 166773655 166774005 -17514657 - THE1B LTR MaLR -1 363 1 996 263 98 57 chr4 166774005 166774390 -17514272 + HsTC2a DNA Tc2 148 566 -178 274 263 38 0 chr4 166774525 166774605 -17514057 + L1MEd LINE L1 2472 2554 -3575 24 32 0 0 chr4 166774796 166774827 -17513835 + AT_rich Low_complexity Low_complexity 1 31 0 423 285 120 79 chr4 166774865 166775521 -17513141 + L1MEd LINE L1 2884 3566 -2563 25 75 0 0 chr4 166775700 166775753 -17512909 + AT_rich Low_complexity Low_complexity 1 53 0 28 0 0 0 chr4 166776247 166776275 -17512387 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 166776338 166776366 -17512296 + AT_rich Low_complexity Low_complexity 1 28 0 1519 186 111 36 chr4 166776366 166776835 -17511827 - L1MA8 LINE L1 -3 6288 5785 326 203 0 0 chr4 166776838 166776902 -17511760 + L1 LINE L1 3492 3555 -2591 1810 228 25 4 chr4 166776906 166777433 -17511229 - L1 LINE L1 -2647 3499 2962 21 0 0 0 chr4 166777644 166777665 -17510997 + AT_rich Low_complexity Low_complexity 1 21 0 424 332 86 16 chr4 166777712 166777956 -17510706 - L1MC4 LINE L1 -1004 7038 6778 31 44 0 0 chr4 166778236 166778281 -17510381 + AT_rich Low_complexity Low_complexity 1 45 0 248 187 22 22 chr4 166778411 166778502 -17510160 + (TA)n Simple_repeat Simple_repeat 1 91 0 258 266 0 0 chr4 166778517 166778581 -17510081 - L1MC4 LINE L1 -1913 5895 5832 23 68 0 0 chr4 166778713 166778757 -17509905 + AT_rich Low_complexity Low_complexity 1 44 0 233 228 0 0 chr4 166779626 166779683 -17508979 + T-rich Low_complexity Low_complexity 2 58 0 316 310 155 23 chr4 166780461 166780635 -17508027 - MIR SINE MIR -1 261 65 2059 121 0 0 chr4 166780641 166780953 -17507709 - AluSg SINE Alu 0 312 1 24 53 0 0 chr4 166781314 166781352 -17507310 + AT_rich Low_complexity Low_complexity 1 38 0 2188 112 0 3 chr4 166782023 166782337 -17506325 + AluSp SINE Alu 1 313 0 213 300 88 0 chr4 166782916 166782996 -17505666 - MIR SINE MIR -81 181 95 1352 310 69 29 chr4 166782996 166783622 -17505040 + MLT2F LTR ERVL 1 651 -12 2600 89 86 29 chr4 166784674 166785049 -17503613 + MLT2A1 LTR ERVL 3 406 -38 208 0 62 0 chr4 166785049 166785081 -17503581 + (TA)n Simple_repeat Simple_repeat 2 35 0 2600 89 86 29 chr4 166785081 166785122 -17503540 + MLT2A1 LTR ERVL 406 443 -1 1566 165 4 0 chr4 166785503 166785752 -17502910 - AluSx SINE Alu -16 296 47 377 278 0 0 chr4 166785949 166786046 -17502616 + MLT1J LTR MaLR 69 165 -346 1192 309 40 8 chr4 166787827 166788180 -17500482 + L1MD2 LINE L1 143 506 -6037 * 2323 255 67 32 chr4 166788178 166788961 -17499701 + L1MD2 LINE L1 2472 3307 -3233 2174 92 0 22 chr4 166788961 166789275 -17499387 - AluSq SINE Alu -6 307 1 2323 255 67 32 chr4 166789275 166789597 -17499065 + L1MD2 LINE L1 3307 3616 -2924 1502 180 11 0 chr4 166789596 166789639 -17499023 - L1PB4 LINE L1 -93 6063 6021 * 2027 157 100 91 chr4 166789639 166789934 -17498728 - L1MA3 LINE L1 -278 6027 5736 1637 107 0 4 chr4 166789934 166790176 -17498486 - L1PA7 LINE L1 -4 6150 5910 2027 157 100 91 chr4 166790176 166790188 -17498474 - L1MA3 LINE L1 -569 5736 5726 267 103 0 0 chr4 166790188 166790227 -17498435 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 2027 157 100 91 chr4 166790227 166790630 -17498032 - L1MA3 LINE L1 -579 5726 5369 811 261 63 53 chr4 166790627 166791249 -17497413 + L1MD2 LINE L1 5216 5833 -745 * 343 245 31 50 chr4 166791347 166791506 -17497156 - L1MD1 LINE L1 -187 6055 5900 2269 269 45 17 chr4 166791521 166792238 -17496424 + L1MD2 LINE L1 5821 6557 -196 341 299 0 0 chr4 166792241 166792328 -17496334 - L1MC4 LINE L1 -1339 6703 6617 482 92 26 0 chr4 166792339 166792415 -17496247 + (CATATA)n Simple_repeat Simple_repeat 2 79 0 588 279 12 80 chr4 166792415 166792666 -17495996 + L1MD2 LINE L1 6102 6335 -24 234 0 0 0 chr4 166792784 166792810 -17495852 + (CAG)n Simple_repeat Simple_repeat 3 28 0 249 216 11 34 chr4 166793014 166793102 -17495560 + (TA)n Simple_repeat Simple_repeat 2 87 0 548 14 14 0 chr4 166794415 166794484 -17494178 + (GA)n Simple_repeat Simple_repeat 1 70 0 1964 50 8 23 chr4 166794819 166795081 -17493581 - AluY SINE Alu -13 298 41 545 271 87 77 chr4 166797066 166797535 -17491127 + L1ME3A LINE L1 5686 6159 -11 21 0 0 0 chr4 166798317 166798338 -17490324 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 166798864 166798892 -17489770 + AT_rich Low_complexity Low_complexity 1 28 0 5230 240 54 37 chr4 166799162 166799914 -17488748 - L1MC3 LINE L1 0 7995 7258 186 118 0 0 chr4 166799914 166799948 -17488714 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 5230 240 54 37 chr4 166799948 166800319 -17488343 - L1MC3 LINE L1 -737 7258 6895 1698 99 111 4 chr4 166800319 166800581 -17488081 + AluY SINE Alu 3 292 -19 5230 240 54 37 chr4 166800581 166801889 -17486773 - L1MC3 LINE L1 -1100 6895 5520 30 0 0 0 chr4 166802242 166802272 -17486390 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr4 166802600 166802634 -17486028 + AT_rich Low_complexity Low_complexity 1 34 0 1388 302 32 3 chr4 166803252 166803842 -17484820 - L1ME1 LINE L1 -189 5977 5371 712 282 59 14 chr4 166803889 166804232 -17484430 - L1ME1 LINE L1 -854 5292 4935 294 230 0 122 chr4 166804772 166804911 -17483751 - L2 LINE L2 -76 3237 3116 24 0 0 0 chr4 166805093 166805117 -17483545 + AT_rich Low_complexity Low_complexity 1 24 0 1286 169 50 0 chr4 166806132 166806351 -17482311 + MER30 DNA MER1_type 1 230 0 2382 260 33 31 chr4 166807062 166807240 -17481422 + L1 LINE L1 2044 2220 -5345 2822 107 34 11 chr4 166807240 166807687 -17480975 + L1PA13 LINE L1 5705 6161 -2 2382 260 33 31 chr4 166807687 166808743 -17479919 + L1 LINE L1 2220 3268 -4297 3363 190 53 28 chr4 166808751 166809043 -17479619 + L1MA7 LINE L1 5494 5777 -514 330 67 0 0 chr4 166809043 166809088 -17479574 + (CA)n Simple_repeat Simple_repeat 2 46 0 3363 190 53 28 chr4 166809088 166809574 -17479088 + L1MA7 LINE L1 5777 6291 0 1531 206 3 7 chr4 166809672 166809959 -17478703 - AluJo SINE Alu -26 286 1 2261 128 55 0 chr4 166811278 166811623 -17477039 + THE1B LTR MaLR 1 364 0 740 180 15 149 chr4 166811878 166812139 -17476523 + L1 LINE L1 5263 5488 -2077 2579 20 3 0 chr4 166814209 166814507 -17474155 + AluY SINE Alu 1 299 -12 22 0 0 0 chr4 166814659 166814681 -17473981 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 166815102 166815123 -17473539 + AT_rich Low_complexity Low_complexity 1 21 0 2536 192 40 110 chr4 166816691 166816798 -17471864 - L1MA9 LINE L1 -38 6274 6161 210 71 0 0 chr4 166816798 166816826 -17471836 + (TG)n Simple_repeat Simple_repeat 1 28 0 2536 192 40 110 chr4 166816826 166817309 -17471353 - L1MA9 LINE L1 -151 6161 5758 1568 128 23 72 chr4 166817309 166817614 -17471048 + AluJb SINE Alu 6 295 -17 2536 192 40 110 chr4 166817614 166817856 -17470806 - L1MA9 LINE L1 -554 5758 5500 * 2913 259 49 32 chr4 166817852 166818625 -17470037 - L1M3de LINE L1 -5292 1361 576 294 302 126 13 chr4 166818611 166818770 -17469892 - L1M3d LINE L1 -5625 266 90 * 3617 207 37 28 chr4 166818802 166818860 -17469802 - L1MA9 LINE L1 -816 5330 5274 234 0 0 0 chr4 166818860 166818886 -17469776 + (TA)n Simple_repeat Simple_repeat 2 27 0 2534 30 40 0 chr4 166818889 166819188 -17469474 - AluY SINE Alu 0 311 1 3617 207 37 28 chr4 166819188 166820093 -17468569 - L1MA9 LINE L1 -873 5273 4354 2568 93 6 0 chr4 166820093 166820457 -17468205 - L1PB1 LINE L1 -4 6863 6498 209 159 23 0 chr4 166820457 166820501 -17468161 + (TA)n Simple_repeat Simple_repeat 1 45 0 322 47 0 0 chr4 166820524 166820567 -17468095 - L1PB1 LINE L1 -360 6507 6465 3455 158 10 8 chr4 166820575 166821662 -17467000 - L1PB1 LINE L1 -380 6487 5397 2156 132 0 3 chr4 166821669 166821973 -17466689 - AluSg SINE Alu -2 308 6 4302 216 7 16 chr4 166821988 166822171 -17466491 + L1 LINE L1 3328 3511 -2635 1598 158 70 14 chr4 166822171 166822455 -17466207 + AluSg SINE Alu 1 300 -10 4302 216 7 16 chr4 166822455 166823299 -17465363 + L1 LINE L1 3511 4345 -1801 9471 145 34 19 chr4 166823299 166823562 -17465100 - L1PB1 LINE L1 -3468 3394 3136 2094 138 3 0 chr4 166823562 166823866 -17464796 - AluSx SINE Alu -7 305 1 9471 145 34 19 chr4 166823866 166825782 -17462880 - L1PB1 LINE L1 -3726 3136 971 2385 73 0 22 chr4 166825782 166826096 -17462566 + AluY SINE Alu 1 307 -4 9471 145 34 19 chr4 166826096 166826340 -17462322 - L1PB1 LINE L1 -5891 971 732 1117 180 0 0 chr4 166826424 166826624 -17462038 - L1PB1 LINE L1 -6663 200 1 5234 214 84 16 chr4 166826624 166828174 -17460488 - L1 LINE L1 -1763 4383 2729 1664 198 100 49 chr4 166828608 166829058 -17459604 - L1MB4 LINE L1 -2 6178 5752 1199 206 92 40 chr4 166829058 166829384 -17459278 - MER2 DNA MER2_type 0 344 2 1664 198 100 49 chr4 166829384 166829629 -17459033 - L1MB4 LINE L1 -428 5752 5521 2414 59 0 23 chr4 166829629 166829933 -17458729 - AluY SINE Alu -14 297 1 1664 198 100 49 chr4 166829933 166830055 -17458607 - L1MB4 LINE L1 -659 5521 5407 2138 123 0 0 chr4 166830055 166830365 -17458297 + AluY SINE Alu 1 310 -1 1664 198 100 49 chr4 166830365 166830387 -17458275 - L1MB4 LINE L1 -773 5407 5288 255 61 0 0 chr4 166831959 166831992 -17456670 + (TCC)n Simple_repeat Simple_repeat 3 35 0 1752 125 3 57 chr4 166831992 166832288 -17456374 - AluSx SINE Alu -32 280 1 13043 238 21 13 chr4 166832341 166837701 -17450961 - L1PA16 LINE L1 -7 7597 2182 207 0 0 0 chr4 166837784 166837807 -17450855 + (TTG)n Simple_repeat Simple_repeat 2 24 0 253 384 20 7 chr4 166837993 166838139 -17450523 - L1PA16 LINE L1 -5276 2298 2151 807 293 151 43 chr4 166838189 166838718 -17449944 - L1PA16 LINE L1 -6200 1374 789 289 193 17 34 chr4 166838741 166838860 -17449802 + CT-rich Low_complexity Low_complexity 4 120 0 667 350 62 21 chr4 166839354 166839920 -17448742 - ERVL LTR ERVL -1790 3974 3386 404 194 0 32 chr4 166840116 166840209 -17448453 - L1PA15-16 LINE L1 -4545 2304 2215 4404 167 61 0 chr4 166840214 166841078 -17447584 + L1PB4 LINE L1 5235 6150 -6 1264 355 60 36 chr4 166841217 166842441 -17446221 - ERVL LTR ERVL -2660 3104 1852 212 257 26 9 chr4 166842556 166842669 -17445993 + (TGGG)n Simple_repeat Simple_repeat 2 116 0 654 216 0 0 chr4 166842670 166842967 -17445695 + G-rich Low_complexity Low_complexity 1 297 0 1265 206 105 41 chr4 166843097 166843441 -17445221 + MLT2D LTR ERVL 1 366 -48 246 148 66 33 chr4 166843468 166843529 -17445133 + MLT2D LTR ERVL 456 518 -2 271 394 6 11 chr4 166843646 166843826 -17444836 - ERVL LTR ERVL -3735 1261 1083 21 36 0 0 chr4 166843883 166843911 -17444751 + AT_rich Low_complexity Low_complexity 1 28 0 294 351 42 39 chr4 166844292 166844551 -17444111 - ERVL LTR ERVL -4375 621 362 435 250 8 39 chr4 166844879 166845007 -17443655 - LTR16C LTR ERVL -8 483 360 644 227 74 6 chr4 166845262 166845438 -17443224 + MLT1C LTR MaLR 37 224 -243 282 152 22 0 chr4 166845439 166845485 -17443177 + MLT1C LTR MaLR 420 466 -1 1670 250 111 121 chr4 166846002 166846606 -17442056 + MLT1E2 LTR MaLR 57 626 0 438 315 53 4 chr4 166846939 166847143 -17441519 + MLT1I LTR MaLR 1 219 -227 2139 104 0 32 chr4 166847646 166847954 -17440708 + AluSg SINE Alu 1 298 -12 2279 108 0 0 chr4 166847962 166848267 -17440395 + AluSx SINE Alu 1 305 -7 21 82 0 0 chr4 166848741 166848790 -17439872 + AT_rich Low_complexity Low_complexity 1 49 0 26 50 0 0 chr4 166849553 166849593 -17439069 + AT_rich Low_complexity Low_complexity 1 40 0 212 294 133 56 chr4 166849842 166849985 -17438677 - MER5A DNA MER1_type 0 189 36 7805 220 26 10 chr4 166850146 166852892 -17435770 - L1PB4 LINE L1 -4 6152 3362 1171 280 69 10 chr4 166853587 166854198 -17434464 - L1MEc LINE L1 -4110 2286 1640 30 0 0 0 chr4 166854259 166854289 -17434373 + AT_rich Low_complexity Low_complexity 1 30 0 1369 148 15 27 chr4 166854415 166854678 -17433984 + Tigger7 DNA MER2_type 2231 2490 -1 4660 254 90 29 chr4 166854722 166856375 -17432287 + L1MDa LINE L1 499 2270 -4270 1515 163 12 8 chr4 166856375 166856633 -17432029 - AluSx SINE Alu -11 301 43 4660 254 90 29 chr4 166856633 166856752 -17431910 + L1MDa LINE L1 2270 2380 -4160 391 316 53 12 chr4 166856759 166856930 -17431732 + L1MD2 LINE L1 5966 6143 -216 366 228 21 43 chr4 166857066 166857213 -17431449 - MER45 DNA AcHobo -15 1566 1413 22 35 0 0 chr4 166857215 166857244 -17431418 + AT_rich Low_complexity Low_complexity 1 29 0 283 211 0 0 chr4 166857244 166857296 -17431366 - FLAM_A SINE Alu -3 130 79 * 1454 161 44 50 chr4 166857291 166857442 -17431220 + MSTB LTR MaLR 131 281 -145 1651 178 45 10 chr4 166857442 166857734 -17430928 + AluSx SINE Alu 1 302 -10 1454 161 44 50 chr4 166857734 166857880 -17430782 + MSTB LTR MaLR 281 426 0 5956 198 82 11 chr4 166857882 166859086 -17429576 + MSTB-int LTR MaLR 3 1292 -359 1825 189 79 8 chr4 166859086 166859467 -17429195 - MSTB LTR MaLR 0 426 19 1696 190 52 3 chr4 166859482 166859829 -17428833 + MSTB-int LTR MaLR 1288 1651 0 2219 199 9 9 chr4 166859829 166860255 -17428407 + MSTB LTR MaLR 1 426 0 201 147 0 0 chr4 166862164 166862198 -17426464 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 204 125 0 0 chr4 166862602 166862634 -17426028 + (GGAA)n Simple_repeat Simple_repeat 2 33 0 39 60 0 0 chr4 166863197 166863264 -17425398 + AT_rich Low_complexity Low_complexity 1 67 0 216 200 0 0 chr4 166863976 166864026 -17424636 + (TATG)n Simple_repeat Simple_repeat 4 53 0 245 255 0 43 chr4 166864034 166864128 -17424534 - L1MC4 LINE L1 -1339 6703 6614 308 226 0 12 chr4 166864128 166864212 -17424450 + (TA)n Simple_repeat Simple_repeat 2 84 0 256 300 0 0 chr4 166864215 166864305 -17424357 - L1MC4 LINE L1 -1339 6703 6614 233 275 0 22 chr4 166864226 166864317 -17424345 + L1MC4 LINE L1 6615 6703 -1339 * 1335 199 0 0 chr4 166865034 166865265 -17423397 + AluJb SINE Alu 1 231 -81 251 350 133 30 chr4 166865433 166865636 -17423026 - MIR SINE MIR -21 241 18 22 0 0 0 chr4 166865687 166865709 -17422953 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr4 166866088 166866120 -17422542 + AT_rich Low_complexity Low_complexity 1 32 0 321 211 20 20 chr4 166866320 166866472 -17422190 + (TA)n Simple_repeat Simple_repeat 1 152 0 204 236 0 18 chr4 166866528 166866583 -17422079 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 327 345 36 45 chr4 166866590 166866810 -17421852 - L1MEd LINE L1 -5351 768 551 3730 109 11 4 chr4 166867130 166867680 -17420982 + MER41A LTR ERV1 1 554 0 971 220 5 0 chr4 166868150 166868341 -17420321 - MER6B DNA MER2_type -18 192 1 30 45 0 0 chr4 166868570 166868614 -17420048 + AT_rich Low_complexity Low_complexity 1 44 0 1975 114 17 67 chr4 166868677 166869038 -17419624 + L1PA11 LINE L1 5830 6172 -2 192 125 0 0 chr4 166869373 166869405 -17419257 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2288 94 0 0 chr4 166869884 166870183 -17418479 + AluSg SINE Alu 12 310 0 575 293 107 0 chr4 166870223 166870448 -17418214 + MIR SINE MIR 2 250 -12 1485 210 36 44 chr4 166871728 166872118 -17416544 - MLT1B LTR MaLR 0 390 4 209 128 26 0 chr4 166872724 166872763 -17415899 + A-rich Low_complexity Low_complexity 3 42 0 390 271 42 25 chr4 166872822 166872940 -17415722 - L2 LINE L2 -1 3312 3193 22 0 0 0 chr4 166874290 166874312 -17414350 + AT_rich Low_complexity Low_complexity 1 22 0 11033 76 50 2 chr4 166874955 166877200 -17411462 + L1PA6 LINE L1 3851 6150 -4 1443 74 0 16 chr4 166877235 166877425 -17411237 + AluY SINE Alu 1 187 -124 1315 296 64 44 chr4 166877474 166878085 -17410577 - HERVL40 LTR ERVL -3913 1617 995 482 340 94 34 chr4 166878218 166878483 -17410179 + LTR33 LTR ERVL 4 284 -237 271 311 200 3 chr4 166878655 166878848 -17409814 - MIR SINE MIR -25 237 26 2164 164 51 5 chr4 166879908 166880317 -17408345 + MSTA LTR MaLR 1 428 0 180 245 41 20 chr4 166880396 166880445 -17408217 + L2 LINE L2 2922 2971 -343 370 385 99 22 chr4 166881376 166881820 -17406842 - L2 LINE L2 -346 2968 2491 2167 155 27 67 chr4 166882052 166882498 -17406164 + MSTA LTR MaLR 1 428 0 193 353 24 0 chr4 166883100 166883185 -17405477 - MIR SINE MIR -89 173 87 1975 97 10 17 chr4 166883185 166883517 -17405145 + AluSp SINE Alu 1 313 0 2151 113 0 3 chr4 166883758 166884058 -17404604 - AluSc SINE Alu -10 299 1 846 293 151 2 chr4 166885040 166885576 -17403086 - L1M4 LINE L1 -2559 3587 2972 204 118 29 0 chr4 166885807 166885841 -17402821 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr4 166889024 166889052 -17399610 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 166889072 166889100 -17399562 + AT_rich Low_complexity Low_complexity 1 28 0 4393 122 141 43 chr4 166889492 166890947 -17397715 + pTR5 LTR ERV1 738 2438 0 315 329 27 7 chr4 166890962 166891108 -17397554 + MLT1J LTR MaLR 68 216 -295 1999 209 98 15 chr4 166891740 166892696 -17395966 - L1MCa LINE L1 -4756 1808 736 453 271 0 8 chr4 166892702 166892824 -17395838 - L1MCa LINE L1 -5355 690 570 1024 289 67 85 chr4 166892968 166893581 -17395081 - L1MCa LINE L1 -5485 685 41 456 316 56 30 chr4 166894742 166895011 -17393651 + L1MC4 LINE L1 6728 7003 -1039 1198 249 65 52 chr4 166895164 166895702 -17392960 + L1MC5 LINE L1 6972 7516 -445 320 286 94 64 chr4 166895797 166896000 -17392662 + L1ME3A LINE L1 5962 6170 0 631 185 33 13 chr4 166896979 166897130 -17391532 + L1MA10 LINE L1 6180 6333 -1 29 70 0 0 chr4 166897218 166897275 -17391387 + AT_rich Low_complexity Low_complexity 1 57 0 209 350 30 0 chr4 166897672 166897772 -17390890 - L2 LINE L2 -1300 2014 1912 299 271 60 38 chr4 166898183 166898316 -17390346 + L1MEc LINE L1 29 164 -6232 3244 134 2 2 chr4 166898577 166899078 -17389584 - L1PA15 LINE L1 -205 5960 5460 1223 133 0 15 chr4 166899078 166899281 -17389381 + L1PA15 LINE L1 5962 6161 -4 498 233 26 0 chr4 166899486 166899503 -17389159 + LTR57-int LTR ERVL 310 428 -4915 555 162 0 10 chr4 166899503 166899602 -17389060 + MER84-int LTR ERV1 814 911 -875 395 79 32 0 chr4 166899608 166899671 -17388991 + (GAAA)n Simple_repeat Simple_repeat 2 66 0 349 195 0 13 chr4 166899705 166899782 -17388880 + MER84-int LTR ERV1 927 1002 -3869 * 350 209 24 21 chr4 166899713 166899940 -17388722 + LTR57-int LTR ERVL 485 813 -4530 * 2770 197 41 69 chr4 166899939 166900077 -17388585 + MER84-int LTR ERV1 885 1025 -5306 2531 114 5 11 chr4 166900077 166900454 -17388208 - THE1C LTR MaLR 0 375 1 2770 197 41 69 chr4 166900454 166901599 -17387063 + MER84-int LTR ERV1 1025 3853 -2478 643 211 25 45 chr4 166901685 166901884 -17386778 + MER84-int LTR ERV1 3536 3730 -2868 1231 245 69 57 chr4 166901948 166902703 -17385959 + MER84-int LTR ERV1 2468 4500 -1831 5942 156 50 10 chr4 166902856 166903994 -17384668 + MER84-int LTR ERV1 2746 5705 -626 301 330 0 0 chr4 166904587 166904746 -17383916 + MER84-int LTR ERV1 4274 8410 -509 323 23 23 0 chr4 166905251 166905295 -17383367 + (CAA)n Simple_repeat Simple_repeat 2 46 0 494 242 46 46 chr4 166905544 166905738 -17382924 + LTR45B LTR ERV1 296 489 0 235 348 14 7 chr4 166905739 166905877 -17382785 + L1MEc LINE L1 541 679 -5717 892 262 111 40 chr4 166905879 166906582 -17382080 + L1MEc LINE L1 908 1660 -4736 239 154 0 0 chr4 166906591 166906630 -17382032 + MLT1B LTR MaLR 350 388 -2 27 0 0 0 chr4 166907116 166907143 -17381519 + AT_rich Low_complexity Low_complexity 1 27 0 29 0 0 0 chr4 166907627 166907656 -17381006 + AT_rich Low_complexity Low_complexity 1 29 0 34 0 0 0 chr4 166909778 166909812 -17378850 + AT_rich Low_complexity Low_complexity 1 34 0 1791 227 18 34 chr4 166910460 166910963 -17377699 - L1MB1 LINE L1 -1894 4252 3758 1208 194 58 16 chr4 166910963 166911272 -17377390 + L1MB1 LINE L1 4222 4543 -1603 * 4610 174 40 23 chr4 166911268 166912599 -17376063 + L1MB1 LINE L1 4807 6167 -1 663 85 50 28 chr4 166912610 166912859 -17375803 + (TA)n Simple_repeat Simple_repeat 1 254 0 2040 123 71 8 chr4 166912862 166913213 -17375449 + L1PB3 LINE L1 5782 6154 0 333 331 104 55 chr4 166913261 166913645 -17375017 - MLT1J2 LTR MaLR -12 438 36 21 0 0 0 chr4 166913782 166913803 -17374859 + AT_rich Low_complexity Low_complexity 1 21 0 872 191 79 0 chr4 166913937 166914115 -17374547 - LTR47A LTR ERVL 0 452 261 707 224 14 129 chr4 166914220 166914506 -17374156 + LTR8A LTR ERV1 34 286 -441 2652 154 5 7 chr4 166914547 166914976 -17373686 + MSTA LTR MaLR 1 428 0 975 233 97 38 chr4 166914991 166915463 -17373199 + LTR8A LTR ERV1 172 727 0 1863 157 146 11 chr4 166915754 166916131 -17372531 - MSTA LTR MaLR 0 428 1 7877 172 14 47 chr4 166916131 166917763 -17370899 - MSTA-int LTR MaLR 0 1580 3 1553 175 175 11 chr4 166917767 166918133 -17370529 - MSTA LTR MaLR -2 426 1 1342 145 16 20 chr4 166918188 166918412 -17370250 + L1MA2 LINE L1 6058 6282 -22 3911 139 3 26 chr4 166918412 166919038 -17369624 + LTR9 LTR ERV1 1 612 0 1342 145 16 20 chr4 166919038 166919061 -17369601 + L1MA2 LINE L1 6282 6304 0 23 33 0 0 chr4 166919050 166919080 -17369582 + AT_rich Low_complexity Low_complexity 1 30 0 5178 73 133 1 chr4 166919267 166920131 -17368531 - pTR5 LTR ERV1 0 2606 1520 1739 171 58 25 chr4 166920843 166921206 -17367456 - THE1C LTR MaLR 0 375 1 1757 103 0 0 chr4 166921246 166921478 -17367184 - AluSg SINE Alu -78 232 1 285 252 238 50 chr4 166921610 166921892 -17366770 + L2 LINE L2 2262 2596 -718 296 300 0 0 chr4 166922271 166922341 -17366321 + L2 LINE L2 3243 3312 -1 613 233 11 78 chr4 166922629 166922809 -17365853 + MER5B DNA MER1_type 5 172 -6 183 349 35 0 chr4 166922899 166922985 -17365677 - MER5B DNA MER1_type -89 89 1 273 306 0 10 chr4 166923608 166923706 -17364956 + T-rich Low_complexity Low_complexity 5 101 0 750 221 25 100 chr4 166923872 166924153 -17364509 + LTR68 LTR ERV1 228 487 -253 738 186 43 103 chr4 166924163 166924416 -17364246 - MER31B LTR ERV1 -4 462 225 291 273 20 10 chr4 166925888 166926016 -17362646 + (TA)n Simple_repeat Simple_repeat 1 129 0 1351 190 0 4 chr4 166926136 166926362 -17362300 + AluJo SINE Alu 3 227 -85 246 328 35 17 chr4 166927250 166927366 -17361296 - MIR3 SINE MIR -46 162 45 1050 253 81 23 chr4 166927507 166927903 -17360759 - L1ME3A LINE L1 0 6170 5752 866 258 124 20 chr4 166927964 166928679 -17359983 - L1MEc LINE L1 -3564 2651 1900 2511 152 39 5 chr4 166928698 166929107 -17359555 + MSTA LTR MaLR 1 423 -5 588 76 0 0 chr4 166929331 166929410 -17359252 - MADE1 DNA Mariner 0 80 2 860 281 119 57 chr4 166929730 166930726 -17357936 - L1MEc LINE L1 -4529 1867 810 325 312 91 20 chr4 166930774 166930973 -17357689 - L1ME3A LINE L1 -1161 4985 4773 * 447 317 50 47 chr4 166930970 166931187 -17357475 - L1ME3A LINE L1 -2686 3460 3240 2094 179 37 43 chr4 166931187 166931651 -17357011 - LOR1b LTR ERV1 0 461 1 447 317 50 47 chr4 166931651 166931793 -17356869 - L1ME3A LINE L1 -2906 3240 3100 32 43 0 0 chr4 166931801 166931847 -17356815 + AT_rich Low_complexity Low_complexity 1 46 0 2067 104 13 10 chr4 166932497 166932804 -17355858 + AluSx SINE Alu 1 308 -4 198 300 0 0 chr4 166932972 166933022 -17355640 - MIR SINE MIR -3 259 210 1409 195 0 23 chr4 166933051 166933308 -17355354 - AluJb SINE Alu -61 251 1 312 202 77 39 chr4 166933309 166933413 -17355249 - MIR SINE MIR -64 198 91 1299 204 7 28 chr4 166933497 166933827 -17354835 + AluJo SINE Alu 12 312 0 229 304 59 37 chr4 166934391 166934526 -17354136 + LTR33 LTR ERVL 328 465 -56 765 237 148 7 chr4 166934796 166935079 -17353583 + L1ME2 LINE L1 5806 6128 -36 340 303 8 8 chr4 166935243 166935365 -17353297 - MER94 DNA DNA -7 127 6 239 232 54 18 chr4 166935870 166935926 -17352736 - MLT1J1 LTR MaLR -142 304 247 333 308 71 49 chr4 166936109 166936375 -17352287 - MLT1J LTR MaLR -7 504 233 238 250 21 0 chr4 166936623 166936671 -17351991 + L2 LINE L2 3005 3053 -260 525 311 95 32 chr4 166936784 166937122 -17351540 + LTR33 LTR ERVL 156 514 -7 335 306 107 28 chr4 166937163 166937379 -17351283 + L2 LINE L2 3077 3309 -4 2357 51 0 20 chr4 166937425 166937721 -17350941 + AluY SINE Alu 5 294 -17 23 54 0 0 chr4 166939269 166939306 -17349356 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr4 166940155 166940190 -17348472 + AT_rich Low_complexity Low_complexity 1 35 0 227 255 29 10 chr4 166940438 166940540 -17348122 + (TAA)n Simple_repeat Simple_repeat 1 104 0 457 226 129 78 chr4 166940572 166941161 -17347501 + Charlie2 DNA MER1_type 2244 2862 0 202 292 78 39 chr4 166941178 166941332 -17347330 - L2 LINE L2 -1766 1548 1389 1291 156 0 36 chr4 166941464 166941688 -17346974 + AluSg/x SINE Alu 94 309 -3 474 333 12 6 chr4 166942107 166942275 -17346387 - MIR SINE MIR -19 243 75 1112 213 21 12 chr4 166944447 166944775 -17343887 - Charlie1 DNA MER1_type 0 2761 2431 183 325 39 13 chr4 166945370 166945447 -17343215 - MIR3 SINE MIR -21 187 109 8672 201 47 41 chr4 166946642 166950018 -17338644 + L1MB2 LINE L1 20 3502 -2880 5606 140 30 40 chr4 166950019 166950061 -17338601 + Tigger1 DNA MER2_type 575 616 -1802 2006 91 40 34 chr4 166950061 166950358 -17338304 - AluY SINE Alu -12 299 1 5606 140 30 40 chr4 166950358 166951350 -17337312 + Tigger1 DNA MER2_type 616 1599 -819 1662 179 63 48 chr4 166951346 166951421 -17337241 + Tigger1 DNA MER2_type 2017 2089 -329 * 1817 163 32 32 chr4 166951421 166951796 -17336866 + THE1C LTR MaLR 1 375 0 1662 179 63 48 chr4 166951796 166951997 -17336665 + Tigger1 DNA MER2_type 2089 2304 -114 2041 131 0 0 chr4 166951997 166952308 -17336354 - AluSc SINE Alu 0 311 1 1662 179 63 48 chr4 166952308 166952425 -17336237 + Tigger1 DNA MER2_type 2304 2418 0 5381 235 38 21 chr4 166952427 166953941 -17334721 + L1MB2 LINE L1 3858 5415 -1004 1965 128 3 23 chr4 166953941 166954247 -17334415 + AluSg SINE Alu 1 300 -10 5381 235 38 21 chr4 166954247 166954857 -17333805 + L1MB2 LINE L1 5415 6013 -406 249 212 30 0 chr4 166954856 166954922 -17333740 + L1MB2 LINE L1 6337 6404 -3 * 240 241 17 0 chr4 166955122 166955180 -17333482 + MARNA DNA Mariner 313 371 -215 243 0 0 0 chr4 166955432 166955459 -17333203 + (A)n Simple_repeat Simple_repeat 1 27 0 1151 231 123 27 chr4 166955629 166955963 -17332699 + MLT1D LTR MaLR 140 505 0 22 35 0 0 chr4 166956186 166956215 -17332447 + AT_rich Low_complexity Low_complexity 1 29 0 231 36 0 0 chr4 166959071 166959099 -17329563 + (A)n Simple_repeat Simple_repeat 1 28 0 180 0 0 0 chr4 166960755 166960775 -17327887 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2082 75 8 0 chr4 166961440 166961707 -17326955 - AluY SINE Alu -7 304 36 22 70 0 0 chr4 166962284 166962327 -17326335 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr4 166966273 166966296 -17322366 + AT_rich Low_complexity Low_complexity 1 23 0 236 330 0 43 chr4 166966495 166966589 -17322073 + MLT1-int LTR MaLR 1006 1095 -276 1825 129 219 3 chr4 166966939 166967323 -17321339 - L1MCa LINE L1 -3932 2494 2028 875 110 17 0 chr4 166967326 166967444 -17321218 - AluSq/x SINE Alu -193 120 1 400 195 0 0 chr4 166967444 166967521 -17321141 + L1MCa LINE L1 1926 2002 -4424 21 0 0 0 chr4 166968046 166968067 -17320595 + AT_rich Low_complexity Low_complexity 1 21 0 464 350 85 57 chr4 166968163 166968409 -17320253 + HERVL LTR ERVL 2709 2946 -2708 2196 115 3 0 chr4 166968409 166968704 -17319958 - AluSp SINE Alu -17 296 1 464 350 85 57 chr4 166968704 166969714 -17318948 + HERVL LTR ERVL 2946 4001 -1653 515 287 15 51 chr4 166969788 166969983 -17318679 - ERVL LTR ERVL -1439 4325 4138 372 247 92 53 chr4 166970076 166970359 -17318303 + L1MC5 LINE L1 7614 7907 -54 23 0 0 0 chr4 166970359 166970382 -17318280 + AT_rich Low_complexity Low_complexity 1 23 0 1321 219 13 20 chr4 166970382 166970684 -17317978 + AluJo SINE Alu 1 300 -12 809 172 12 0 chr4 166970751 166970920 -17317742 - L1MA7 LINE L1 0 6291 6121 1478 154 0 0 chr4 166970920 166971160 -17317502 + Tigger5 DNA MER2_type 2052 2291 -32 10230 216 61 21 chr4 166971168 166972519 -17316143 - L1MA7 LINE L1 -678 5613 4318 1751 181 3 3 chr4 166972519 166972828 -17315834 + AluJb SINE Alu 1 309 -3 10230 216 61 21 chr4 166972828 166974503 -17314159 - L1MA7 LINE L1 -1973 4318 2498 38 0 0 0 chr4 166974504 166974542 -17314120 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr4 166974872 166974895 -17313767 + AT_rich Low_complexity Low_complexity 1 23 0 2121 126 3 3 chr4 166975687 166975997 -17312665 + AluSx SINE Alu 3 312 0 335 312 46 29 chr4 166977788 166977961 -17310701 - HAL1 LINE L1 -83 2424 2249 358 332 93 16 chr4 166978262 166978626 -17310036 - HAL1 LINE L1 -719 1788 1397 463 305 16 0 chr4 166978723 166978851 -17309811 + MER94 DNA DNA 5 134 0 261 307 89 20 chr4 166979606 166979822 -17308840 - L1ME3A LINE L1 -241 5929 5704 341 307 63 0 chr4 166980026 166980153 -17308509 + LTR16A LTR ERVL 301 435 -15 386 368 32 7 chr4 166980171 166980326 -17308336 + HERV16 LTR ERVL 1 159 -4837 737 329 93 24 chr4 166980731 166981193 -17307469 + HERV16 LTR ERVL 645 1138 -3858 335 106 0 0 chr4 166981203 166981250 -17307412 - MADE1 DNA Mariner 0 80 34 2280 342 72 23 chr4 166981343 166982890 -17305772 + HERV16 LTR ERVL 1160 2860 -2136 361 374 26 17 chr4 166983336 166983566 -17305096 + HERV16 LTR ERVL 3384 3615 -2149 337 335 76 47 chr4 166983560 166983942 -17304720 + HERV16 LTR ERVL 3374 3766 -1230 * 887 357 58 21 chr4 166983944 166984409 -17304253 + HERV16 LTR ERVL 4165 4646 -1118 329 244 11 22 chr4 166985032 166985122 -17303540 + MER21B LTR ERV1 1 89 -774 904 242 121 32 chr4 166985281 166985562 -17303100 + MER21B LTR ERV1 143 448 -415 240 61 0 0 chr4 166985576 166985609 -17303053 - LTR54 LTR ERV1 0 510 478 1441 209 42 16 chr4 166985631 166985939 -17302723 - LTR51 LTR ERV1 0 671 356 839 250 119 101 chr4 166985939 166986652 -17302010 - LTR8A LTR ERV1 0 727 2 706 193 96 2 chr4 166986652 166986929 -17301733 - LTR51 LTR ERV1 -311 360 1 2229 185 24 66 chr4 166986929 166987432 -17301230 - LTR54 LTR ERV1 -28 482 1 1052 240 65 40 chr4 166987432 166987743 -17300919 + MER21B LTR ERV1 470 794 -69 2421 80 0 3 chr4 166987743 166988055 -17300607 + AluY SINE Alu 1 311 0 1052 240 65 40 chr4 166988055 166988124 -17300538 + MER21B LTR ERV1 794 860 -3 308 295 11 32 chr4 166988328 166988423 -17300239 + LTR16A LTR ERVL 356 448 -2 202 250 0 18 chr4 166988519 166988575 -17300087 + (CATATA)n Simple_repeat Simple_repeat 5 59 0 538 310 8 38 chr4 166989019 166989258 -17299404 + MER46C DNA MER2_type 71 302 -36 24 32 0 0 chr4 166990356 166990387 -17298275 + AT_rich Low_complexity Low_complexity 1 31 0 354 268 51 29 chr4 166991160 166991298 -17297364 + L1ME3A LINE L1 5134 5274 -872 312 242 0 0 chr4 166991300 166991366 -17297296 - MER8 DNA MER2_type 0 239 174 2332 140 47 61 chr4 166991366 166991809 -17296853 + Tigger2 DNA MER2_type 2282 2718 0 335 283 173 13 chr4 166991816 166992042 -17296620 + L1ME3A LINE L1 5319 5580 -590 378 0 0 0 chr4 166992075 166992117 -17296545 + (TA)n Simple_repeat Simple_repeat 2 43 0 726 255 67 10 chr4 166992118 166992416 -17296246 + L1ME3A LINE L1 5674 5988 -182 1457 274 75 26 chr4 166992916 166993790 -17294872 + L1MEc LINE L1 816 1732 -4664 1140 214 53 39 chr4 166993801 166994086 -17294576 + AluJo SINE Alu 11 299 -13 1339 262 115 18 chr4 166994087 166994932 -17293730 + L1MEc LINE L1 1711 2577 -3638 285 357 57 14 chr4 166994946 166995156 -17293506 - LTR16B LTR ERVL -13 451 233 258 306 0 14 chr4 166995258 166995330 -17293332 - LTR16B LTR ERVL -389 75 5 3002 345 57 36 chr4 166995873 166999837 -17288825 - HERV16 LTR ERVL -793 4861 685 2202 169 32 44 chr4 167000899 167001000 -17287662 + MSTC LTR MaLR 1 102 -326 2146 102 0 20 chr4 167001000 167001305 -17287357 + AluSg SINE Alu 4 302 -8 2202 169 32 44 chr4 167001305 167001636 -17287026 + MSTC LTR MaLR 102 428 0 1763 169 26 40 chr4 167002005 167002384 -17286278 - THE1C LTR MaLR 0 375 2 39 50 0 0 chr4 167003207 167003267 -17285395 + AT_rich Low_complexity Low_complexity 1 60 0 1471 203 3 7 chr4 167003529 167003819 -17284843 + AluJo SINE Alu 5 293 -19 224 132 0 57 chr4 167003819 167003831 -17284831 + (TA)n Simple_repeat Simple_repeat 1 12 -38 4464 48 18 9 chr4 167003831 167004388 -17284274 + LTR6A LTR ERV1 2 563 -1 224 132 0 57 chr4 167004388 167004428 -17284234 + (TA)n Simple_repeat Simple_repeat 12 50 0 308 290 0 0 chr4 167004434 167004534 -17284128 - HAL1b LINE L1 -272 1076 977 333 322 27 0 chr4 167004702 167004851 -17283811 - HAL1b LINE L1 -574 774 622 1789 140 17 10 chr4 167004883 167005175 -17283487 - L1PA10 LINE L1 -13 6155 5862 297 289 49 67 chr4 167005301 167005585 -17283077 - HAL1b LINE L1 -845 503 225 240 258 94 50 chr4 167005790 167005949 -17282713 - L1MC5 LINE L1 -33 7928 7763 557 248 32 32 chr4 167005960 167006085 -17282577 + MER45A DNA AcHobo 4 128 -50 1392 205 37 20 chr4 167007656 167007953 -17280709 - AluJo SINE Alu -10 302 1 186 0 28 56 chr4 167008918 167008954 -17279708 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 606 274 146 34 chr4 167009018 167009368 -17279294 - MLT1I LTR MaLR -18 391 3 1601 242 66 19 chr4 167010017 167010576 -17278086 - L1ME2 LINE L1 -17 6147 5563 1110 92 0 0 chr4 167010649 167010791 -17277871 + AluSg/x SINE Alu 164 305 -7 2019 75 0 11 chr4 167010827 167011108 -17277554 + L1PA8 LINE L1 5892 6169 -3 1414 121 45 18 chr4 167011408 167011632 -17277030 - MER30 DNA MER1_type 0 230 1 311 312 64 29 chr4 167012705 167012878 -17275784 + L2 LINE L2 1883 2061 -1253 254 286 82 10 chr4 167012886 167012984 -17275678 - LTR16A1 LTR ERVL -1 456 352 259 250 9 35 chr4 167013516 167013632 -17275030 - L1MEc LINE L1 -4261 2135 2023 1374 311 69 40 chr4 167014132 167014948 -17273714 + L1MCc LINE L1 672 1510 -4913 330 26 0 0 chr4 167015106 167015145 -17273517 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 866 347 99 30 chr4 167016171 167016875 -17271787 + L2 LINE L2 2164 2916 -398 229 240 13 13 chr4 167016927 167017002 -17271660 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 197 213 21 21 chr4 167017261 167017308 -17271354 + MIR SINE MIR 213 259 -3 5800 199 57 15 chr4 167018111 167020309 -17268353 - L1MA8 LINE L1 -11 6280 3996 28 79 0 0 chr4 167020658 167020721 -17267941 + AT_rich Low_complexity Low_complexity 1 63 0 199 159 0 48 chr4 167022226 167022289 -17266373 + CT-rich Low_complexity Low_complexity 3 62 0 1023 190 51 0 chr4 167022290 167022527 -17266135 - L1MA7 LINE L1 -7 6284 6036 791 169 5 28 chr4 167022529 167022722 -17265940 + L1MA7 LINE L1 5857 6036 -264 21 36 0 0 chr4 167023058 167023086 -17265576 + AT_rich Low_complexity Low_complexity 1 28 0 232 351 152 36 chr4 167023896 167024198 -17264464 + MLT1K LTR MaLR 73 409 -179 1672 222 46 33 chr4 167024266 167024719 -17263943 - MLT1C LTR MaLR 0 467 1 22 0 0 0 chr4 167025414 167025436 -17263226 + AT_rich Low_complexity Low_complexity 1 22 0 380 314 19 26 chr4 167027273 167027429 -17261233 + MIR SINE MIR 84 238 -24 237 249 94 55 chr4 167027879 167028060 -17260602 + L1MCc LINE L1 1281 1468 -4955 349 272 97 39 chr4 167028064 167028270 -17260392 + L1MCc LINE L1 1660 1877 -5054 2374 87 0 0 chr4 167028353 167028664 -17259998 + AluY SINE Alu 1 311 0 1568 139 120 12 chr4 167029728 167029987 -17258675 - AluSg SINE Alu -21 289 3 5570 157 34 23 chr4 167030403 167031428 -17257234 - MER57-int LTR ERV1 -4089 3448 2413 232 278 0 0 chr4 167031841 167031880 -17256782 + U3 snRNA snRNA 72 110 -107 3776 156 122 3 chr4 167031880 167032697 -17255965 - LTR28 LTR ERV1 0 1020 68 1153 198 141 12 chr4 167032822 167033155 -17255507 - L1MB8 LINE L1 -1 6177 5802 1964 278 61 17 chr4 167033232 167033890 -17254772 + L1M3a LINE L1 489 1175 -4780 1324 187 75 0 chr4 167034300 167034568 -17254094 + MLT1D LTR MaLR 218 505 0 192 294 0 0 chr4 167034568 167034619 -17254043 - MIR SINE MIR -35 227 177 378 139 73 153 chr4 167034928 167035065 -17253597 - MLT1D LTR MaLR -223 282 157 392 138 0 0 chr4 167035563 167035621 -17253041 + AluS SINE Alu 2 59 -244 * 1397 217 57 17 chr4 167035619 167035969 -17252693 - LOR1b LTR ERV1 -23 438 75 428 112 163 31 chr4 167035971 167036069 -17252593 + FRAM SINE Alu 53 163 -13 389 143 43 0 chr4 167036071 167036141 -17252521 - LOR1a LTR ERV1 -424 73 1 260 308 96 10 chr4 167036144 167036248 -17252414 - MIR SINE MIR -116 146 34 253 246 0 0 chr4 167036610 167036675 -17251987 + MIR SINE MIR 124 188 -74 1431 215 0 0 chr4 167036834 167037145 -17251517 + AluY SINE Alu 1 311 0 1817 234 47 30 chr4 167041751 167042242 -17246420 - MLT1D LTR MaLR -6 499 1 220 204 0 0 chr4 167043411 167043455 -17245207 + A-rich Low_complexity Low_complexity 5 48 0 342 282 77 36 chr4 167043463 167043683 -17244979 + L1MEc LINE L1 34 262 -6134 696 298 82 56 chr4 167043834 167044371 -17244291 + L1MEc LINE L1 481 1055 -5341 1177 249 76 39 chr4 167044371 167044570 -17244092 - MLT1D LTR MaLR -2 503 313 2079 109 0 0 chr4 167044570 167044882 -17243780 - AluSx SINE Alu 0 312 1 1177 249 76 39 chr4 167044882 167045166 -17243496 - MLT1D LTR MaLR -192 313 1 696 298 82 56 chr4 167045166 167045585 -17243077 + L1MEc LINE L1 1055 1462 -4934 813 176 0 19 chr4 167045631 167045790 -17242872 + AluJo SINE Alu 38 193 -119 1266 269 96 36 chr4 167045792 167046898 -17241764 - L1MC4 LINE L1 -203 7839 6516 312 27 0 0 chr4 167048065 167048102 -17240560 + (CA)n Simple_repeat Simple_repeat 2 38 0 333 385 19 6 chr4 167048145 167048306 -17240356 - MIR SINE MIR -89 173 11 21 0 0 0 chr4 167049963 167049984 -17238678 + AT_rich Low_complexity Low_complexity 1 21 0 578 283 16 27 chr4 167050048 167050235 -17238427 + MER5A DNA MER1_type 2 186 -3 32 67 0 0 chr4 167050318 167050378 -17238284 + AT_rich Low_complexity Low_complexity 1 60 0 195 218 0 0 chr4 167050660 167050715 -17237947 + (CA)n Simple_repeat Simple_repeat 2 56 0 3468 207 143 117 chr4 167050822 167051381 -17237281 - L1MD3 LINE L1 -1 7994 7451 258 271 36 64 chr4 167051381 167051521 -17237141 - MLT1F1 LTR MaLR -429 138 3 3468 207 143 117 chr4 167051521 167051614 -17237048 - L1MD3 LINE L1 -544 7451 7362 445 123 12 25 chr4 167051614 167051695 -17236967 - MADE1 DNA Mariner 0 80 1 3468 207 143 117 chr4 167051695 167052618 -17236044 - L1MD3 LINE L1 -633 7362 6234 284 281 53 44 chr4 167053004 167053118 -17235544 + MIR SINE MIR 56 170 -92 670 234 35 88 chr4 167053132 167053358 -17235304 - MER20 DNA MER1_type -5 214 1 2798 166 15 54 chr4 167053702 167053859 -17234803 + L1P5 LINE L1 4705 4867 -1287 2161 121 12 0 chr4 167053859 167054191 -17234471 - L1PA14 LINE L1 -1 6160 5825 2798 166 15 54 chr4 167054191 167055166 -17233496 + L1P5 LINE L1 4867 5791 -363 755 177 7 0 chr4 167055214 167055355 -17233307 + L1PB3 LINE L1 4705 4846 -1300 2094 160 3 0 chr4 167055357 167055701 -17232961 + L1PB3 LINE L1 5803 6147 -7 26 30 0 0 chr4 167055708 167055741 -17232921 + AT_rich Low_complexity Low_complexity 1 33 0 322 260 0 0 chr4 167055767 167055844 -17232818 + MIR SINE MIR 173 249 -13 2058 115 4 0 chr4 167056485 167056791 -17231871 - AluSg SINE Alu 0 307 1 567 299 122 31 chr4 167056900 167057260 -17231402 - HERVL LTR ERVL -1041 4613 4261 1933 229 7 12 chr4 167057899 167058305 -17230357 + MLT2D LTR ERVL 1 404 -10 409 264 67 28 chr4 167058313 167058524 -17230138 - HERVL LTR ERVL -1855 3799 3633 360 322 40 34 chr4 167058539 167058716 -17229946 - L1M4 LINE L1 -937 5209 5032 1069 129 103 0 chr4 167059387 167059579 -17229083 + L1PA13 LINE L1 5454 5663 -500 492 77 0 4 chr4 167059584 167059791 -17228871 + AluY SINE Alu 1 294 -15 3112 109 35 0 chr4 167059793 167060277 -17228385 + L1PA13 LINE L1 5652 6152 -11 1102 208 18 110 chr4 167060315 167060715 -17227947 + MLT1A1 LTR MaLR 3 365 0 565 271 48 48 chr4 167060750 167061019 -17227643 + L1M4 LINE L1 4080 4348 -1798 3570 229 66 41 chr4 167061121 167062354 -17226308 + L1MC4a LINE L1 5968 7230 -578 486 0 0 0 chr4 167062366 167062420 -17226242 + (TA)n Simple_repeat Simple_repeat 2 55 0 249 269 237 0 chr4 167062424 167062517 -17226145 - L1MD3 LINE L1 -1219 6776 6662 291 114 0 0 chr4 167062526 167062570 -17226092 + (TA)n Simple_repeat Simple_repeat 1 44 0 328 305 91 43 chr4 167062572 167062759 -17225903 + L1MC4a LINE L1 7249 7444 -364 * 678 236 33 11 chr4 167062756 167062938 -17225724 - L1M4 LINE L1 -1210 4936 4751 6999 119 9 4 chr4 167062938 167064789 -17223873 - L1PA8A LINE L1 0 6131 4277 27 0 0 0 chr4 167065553 167065580 -17223082 + AT_rich Low_complexity Low_complexity 1 27 0 2011 122 0 17 chr4 167065869 167066185 -17222477 + AluSx SINE Alu 5 312 0 180 125 0 0 chr4 167066192 167066224 -17222438 + (T)n Simple_repeat Simple_repeat 1 32 0 2049 110 3 20 chr4 167066347 167066678 -17221984 - AluSg SINE Alu 0 310 1 2437 185 8 0 chr4 167066774 167067244 -17221418 - L1M4 LINE L1 -1823 4323 3850 740 256 106 17 chr4 167069307 167069600 -17219062 + HAL1 LINE L1 1479 1797 -710 408 359 86 14 chr4 167069615 167069835 -17218827 + HAL1 LINE L1 1736 1971 -536 2823 176 4 6 chr4 167069872 167070371 -17218291 + L1PA16 LINE L1 5648 6145 -21 278 311 93 27 chr4 167070377 167070711 -17217951 + HAL1 LINE L1 2035 2390 -117 21 0 0 0 chr4 167070898 167070919 -17217743 + AT_rich Low_complexity Low_complexity 1 21 0 242 228 0 0 chr4 167071802 167071859 -17216803 + A-rich Low_complexity Low_complexity 1 57 0 21 36 0 0 chr4 167072281 167072309 -17216353 + AT_rich Low_complexity Low_complexity 1 28 0 1980 114 11 0 chr4 167072526 167072807 -17215855 + AluSc SINE Alu 1 284 -25 226 67 44 0 chr4 167072807 167072852 -17215810 + (TA)n Simple_repeat Simple_repeat 1 47 0 260 232 211 11 chr4 167073355 167073450 -17215212 - L2 LINE L2 -21 3251 3138 2302 138 78 2 chr4 167073632 167074030 -17214632 + MSTA LTR MaLR 1 428 0 2258 113 3 0 chr4 167074146 167074457 -17214205 + AluSx SINE Alu 1 312 0 238 240 0 0 chr4 167074539 167074589 -17214073 - L2 LINE L2 -9 3263 3214 396 91 0 0 chr4 167074885 167074951 -17213711 + (TA)n Simple_repeat Simple_repeat 2 67 0 1086 135 0 0 chr4 167074968 167075146 -17213516 + (TA)n Simple_repeat Simple_repeat 1 178 0 183 42 0 0 chr4 167075146 167075170 -17213492 + (CA)n Simple_repeat Simple_repeat 1 24 0 1877 184 49 34 chr4 167075414 167075848 -17212814 - MSTA LTR MaLR 0 428 1 189 0 0 0 chr4 167076185 167076206 -17212456 + (A)n Simple_repeat Simple_repeat 1 21 0 34 24 0 0 chr4 167077232 167077273 -17211389 + AT_rich Low_complexity Low_complexity 1 41 0 4410 73 0 10 chr4 167077874 167078464 -17210198 + L1PA8A LINE L1 5548 6131 0 275 335 87 59 chr4 167078972 167079515 -17209147 + ERVL LTR ERVL 1002 1559 -4205 633 351 132 17 chr4 167079561 167080219 -17208443 + ERVL LTR ERVL 4172 4905 -859 317 328 8 8 chr4 167080625 167080759 -17207903 + ERVL LTR ERVL 5194 5327 -327 564 277 36 0 chr4 167082623 167082789 -17205873 + L2 LINE L2 2232 2403 -911 3166 100 40 2 chr4 167082821 167083291 -17205371 - L1PA7 LINE L1 -1490 4656 4169 5076 97 92 26 chr4 167083291 167084748 -17203914 + L1PA7 LINE L1 4640 6152 -2 375 332 126 16 chr4 167084797 167085044 -17203618 + L2 LINE L2 2486 2759 -555 2160 106 3 0 chr4 167086050 167086351 -17202311 + AluY SINE Alu 1 302 -9 2168 78 7 7 chr4 167087469 167087775 -17200887 + AluY SINE Alu 1 306 -5 22 70 0 0 chr4 167088164 167088207 -17200455 + AT_rich Low_complexity Low_complexity 1 43 0 270 0 0 0 chr4 167089118 167089148 -17199514 + (TG)n Simple_repeat Simple_repeat 2 31 0 1136 212 26 42 chr4 167089761 167090067 -17198595 - MLT1A2 LTR MaLR -67 307 7 3597 154 14 65 chr4 167092690 167093418 -17195244 - LTR8 LTR ERV1 0 691 1 40 37 0 0 chr4 167094324 167094378 -17194284 + AT_rich Low_complexity Low_complexity 1 54 0 1778 210 53 12 chr4 167094582 167095072 -17193590 + L1MD1 LINE L1 1175 1684 -4856 596 257 64 10 chr4 167095050 167095252 -17193410 + L1MD1 LINE L1 3899 4111 -2429 * 3987 228 91 23 chr4 167095274 167097559 -17191103 + L1MD1 LINE L1 4191 6627 -9 2079 254 42 48 chr4 167098724 167098885 -17189777 - L1ME LINE L1 -2365 3715 3555 2012 123 32 0 chr4 167098885 167099169 -17189493 + AluSx SINE Alu 1 293 -19 2079 254 42 48 chr4 167099169 167100056 -17188606 - L1ME LINE L1 -2525 3555 2673 1909 108 25 0 chr4 167100076 167100353 -17188309 - L1PA10 LINE L1 -23 6145 5862 25 0 0 0 chr4 167101128 167101153 -17187509 + AT_rich Low_complexity Low_complexity 1 25 0 268 207 139 45 chr4 167101345 167101611 -17187051 - L1ME LINE L1 -5073 997 707 104 9 0 0 chr4 167101748 167101859 -17186803 + AT_rich Low_complexity Low_complexity 1 111 0 13145 172 45 12 chr4 167102039 167104503 -17184159 - L1PB1 LINE L1 -1 6866 4486 234 0 0 0 chr4 167104503 167104529 -17184133 + (TTG)n Simple_repeat Simple_repeat 2 27 0 13145 172 45 12 chr4 167104529 167105076 -17183586 - L1PB1 LINE L1 -2381 4486 3959 207 69 0 0 chr4 167105076 167105105 -17183557 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 13145 172 45 12 chr4 167105105 167106259 -17182403 - L1PB1 LINE L1 -2908 3959 2555 386 273 142 55 chr4 167106266 167106943 -17181719 + L1ME3A LINE L1 4317 5052 -1094 5528 200 31 13 chr4 167106982 167108456 -17180206 - L1MC2 LINE L1 -10 6334 4839 480 320 66 48 chr4 167108592 167109092 -17179570 + L1ME3A LINE L1 5254 5762 -400 345 238 214 0 chr4 167109210 167109294 -17179368 + MER45 DNA AcHobo 2 103 -1478 313 253 160 58 chr4 167109372 167109597 -17179065 + L1ME3A LINE L1 5915 6162 -8 919 52 0 0 chr4 167110107 167110223 -17178439 + L1PA2 LINE L1 6040 6155 0 823 222 39 17 chr4 167111355 167111535 -17177127 + MER8 DNA MER2_type 1 184 -55 697 187 0 16 chr4 167111537 167111660 -17177002 + FRAM SINE Alu 34 154 -22 9468 91 2 1 chr4 167113916 167116031 -17172631 - L1PA7 LINE L1 0 6154 4051 2173 118 50 3 chr4 167116031 167116371 -17172291 + L1P LINE L1 1880 2235 -3911 2294 226 128 3 chr4 167116527 167117252 -17171410 - L1 LINE L1 -1552 4594 3779 * 8898 181 66 64 chr4 167117247 167117448 -17171214 - L1M4c LINE L1 -3981 2403 2204 340 247 14 0 chr4 167117448 167117521 -17171141 + Tigger5 DNA MER2_type 2250 2323 0 8898 181 66 64 chr4 167117521 167119644 -17169018 - L1M4c LINE L1 -4180 2204 1 215 281 0 11 chr4 167120701 167120790 -17167872 + CT-rich Low_complexity Low_complexity 2 89 0 340 237 16 54 chr4 167120892 167121078 -17167584 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 327 288 24 0 chr4 167121023 167121148 -17167514 + (TA)n Simple_repeat Simple_repeat 1 128 0 * 979 194 18 0 chr4 167122698 167122920 -17165742 - L1MA7 LINE L1 -2 6289 6064 507 101 0 0 chr4 167123102 167123181 -17165481 + (TTCC)n Simple_repeat Simple_repeat 2 80 0 260 75 0 57 chr4 167123177 167123230 -17165432 + (TTCTCC)n Simple_repeat Simple_repeat 6 55 0 * 353 21 0 21 chr4 167123234 167123281 -17165381 + (TTTC)n Simple_repeat Simple_repeat 4 49 0 21 0 0 0 chr4 167123750 167123771 -17164891 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 167125450 167125471 -17163191 + AT_rich Low_complexity Low_complexity 1 21 0 205 176 0 73 chr4 167126252 167126320 -17162342 + A-rich Low_complexity Low_complexity 2 64 0 282 194 0 0 chr4 167128755 167128817 -17159845 + CT-rich Low_complexity Low_complexity 5 66 0 290 345 31 49 chr4 167129867 167130090 -17158572 + MLT1K LTR MaLR 88 306 -282 185 220 275 9 chr4 167131117 167131226 -17157436 + MIR SINE MIR 70 207 -55 540 301 75 25 chr4 167131405 167131604 -17157058 - MIR SINE MIR -49 213 5 249 403 42 7 chr4 167131602 167131746 -17156916 + MIR3 SINE MIR 57 205 -3 * 22 0 0 0 chr4 167133515 167133537 -17155125 + AT_rich Low_complexity Low_complexity 1 22 0 362 292 70 27 chr4 167133621 167133897 -17154765 - MER90 LTR ERV1 -111 464 81 380 236 0 24 chr4 167134903 167135030 -17153632 + (CATATA)n Simple_repeat Simple_repeat 4 127 0 389 314 0 9 chr4 167135030 167135135 -17153527 - MIR SINE MIR -112 150 47 201 237 0 0 chr4 167135186 167135245 -17153417 + (TATG)n Simple_repeat Simple_repeat 4 62 0 253 243 54 0 chr4 167135250 167135324 -17153338 + L1MC4 LINE L1 6621 6698 -1344 181 235 12 12 chr4 167135326 167135407 -17153255 + (TA)n Simple_repeat Simple_repeat 2 82 0 229 299 39 0 chr4 167135667 167135744 -17152918 - MER117 DNA MER1_type -107 90 11 208 178 22 0 chr4 167136842 167136887 -17151775 + T-rich Low_complexity Low_complexity 2 47 0 231 272 120 40 chr4 167136922 167137047 -17151615 - MIR SINE MIR -30 232 98 739 147 8 16 chr4 167137506 167137635 -17151027 - L1PA16 LINE L1 -9 6157 6030 846 197 0 0 chr4 167139530 167139672 -17148990 + MER70A LTR ERVL 1 142 -330 240 296 0 0 chr4 167140003 167140057 -17148605 - L2 LINE L2 0 3272 3219 715 152 41 28 chr4 167140735 167140880 -17147782 - MER46A DNA MER2_type -2 234 88 26557 74 4 39 chr4 167140980 167145469 -17143193 - L1PA6 LINE L1 -240 5914 1590 342 45 0 0 chr4 167145909 167145953 -17142709 + (TA)n Simple_repeat Simple_repeat 2 45 0 439 331 148 0 chr4 167145957 167146247 -17142415 - L1ME3A LINE L1 -40 6130 5798 326 303 76 9 chr4 167146255 167146466 -17142196 - L1ME3A LINE L1 -407 5763 5539 26 50 0 0 chr4 167146579 167146619 -17142043 + AT_rich Low_complexity Low_complexity 1 40 0 425 213 9 0 chr4 167147274 167147382 -17141280 + (TA)n Simple_repeat Simple_repeat 1 109 0 1017 300 13 3 chr4 167148101 167148401 -17140261 - MLT1E3 LTR MaLR 0 624 322 1810 156 11 0 chr4 167148741 167149024 -17139638 + AluSx SINE Alu 27 312 0 388 359 238 5 chr4 167149860 167150532 -17138130 + L2 LINE L2 1952 2780 -534 921 195 37 0 chr4 167150550 167150740 -17137922 + L1PB1 LINE L1 4 200 -6663 12717 162 66 14 chr4 167150742 167156661 -17132001 + L1PB1 LINE L1 636 6867 0 472 221 38 8 chr4 167156748 167156879 -17131783 + MER67D LTR ERV1 380 514 0 434 308 58 17 chr4 167156933 167157105 -17131557 - MIR SINE MIR -1 261 83 5601 182 15 24 chr4 167157128 167157550 -17131112 - L1MC1 LINE L1 -17 6316 5892 2215 168 44 17 chr4 167157550 167157961 -17130701 - MSTB LTR MaLR -4 422 1 5601 182 15 24 chr4 167157961 167158781 -17129881 - L1MC1 LINE L1 -441 5892 5083 1933 148 0 7 chr4 167158784 167159088 -17129574 + AluSx SINE Alu 1 302 -10 5357 233 36 42 chr4 167159115 167161082 -17127580 + L1M1 LINE L1 2 2667 -4898 636 340 22 32 chr4 167161098 167161504 -17127158 + L1P4 LINE L1 1 402 -7179 5848 236 89 11 chr4 167161510 167163866 -17124796 + L1P4 LINE L1 2094 4634 -2950 1866 181 4 13 chr4 167163864 167164467 -17124195 + L1P4 LINE L1 6417 7012 -591 * 5773 187 37 54 chr4 167164451 167164467 -17124195 + L1M1 LINE L1 3784 3799 -3766 5344 103 73 6 chr4 167164467 167166030 -17122632 + L1PA14 LINE L1 4528 6144 -17 5773 187 37 54 chr4 167166030 167167540 -17121122 + L1M1 LINE L1 3799 5284 -2281 196 346 15 60 chr4 167167560 167167693 -17120969 - L2 LINE L2 -1337 1977 1851 2954 26 0 3 chr4 167168285 167168635 -17120027 + L1PA5 LINE L1 5801 6149 -5 21 0 0 0 chr4 167168670 167168691 -17119971 + AT_rich Low_complexity Low_complexity 1 21 0 221 179 0 18 chr4 167169088 167169144 -17119518 + (TA)n Simple_repeat Simple_repeat 1 55 0 215 170 0 19 chr4 167169905 167169958 -17118704 + (TA)n Simple_repeat Simple_repeat 2 53 0 190 246 33 16 chr4 167170302 167170363 -17118299 - MIR SINE MIR 0 262 201 679 280 81 48 chr4 167170877 167171420 -17117242 + MLT1G LTR MaLR 1 547 -8 292 259 67 44 chr4 167171690 167171825 -17116837 + MIR SINE MIR 57 194 -68 1678 174 17 20 chr4 167172407 167172700 -17115962 - AluJo SINE Alu -18 294 3 23 68 0 0 chr4 167174128 167174172 -17114490 + AT_rich Low_complexity Low_complexity 1 44 0 24 0 0 0 chr4 167174292 167174316 -17114346 + AT_rich Low_complexity Low_complexity 1 24 0 23 68 0 0 chr4 167174542 167174586 -17114076 + AT_rich Low_complexity Low_complexity 1 44 0 212 103 51 0 chr4 167174764 167174803 -17113859 + (CATATA)n Simple_repeat Simple_repeat 6 46 0 228 362 172 0 chr4 167175276 167175392 -17113270 + L2 LINE L2 3137 3272 0 930 221 15 5 chr4 167176331 167176535 -17112127 + MER58 DNA MER1_type 9 214 -2206 224 338 0 0 chr4 167176537 167176608 -17112054 - MIR SINE MIR -187 75 5 24 53 0 0 chr4 167176782 167176820 -17111842 + AT_rich Low_complexity Low_complexity 1 38 0 1468 219 60 48 chr4 167177473 167177971 -17110691 - MLT1D LTR MaLR 0 505 2 267 342 65 5 chr4 167179381 167179580 -17109082 + HAL1b LINE L1 400 610 -738 408 330 65 87 chr4 167179690 167180356 -17108306 + L1M4 LINE L1 3828 4478 -1668 2063 131 0 0 chr4 167180556 167180870 -17107792 + AluSx SINE Alu 1 314 0 1117 251 68 26 chr4 167181050 167181401 -17107261 - LTR40b LTR ERVL -32 430 65 2092 110 0 14 chr4 167181574 167181855 -17106807 + AluSc SINE Alu 1 277 -32 432 0 0 0 chr4 167181855 167181903 -17106759 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 3141 111 29 149 chr4 167182220 167183131 -17105531 + Tigger3b DNA MER2_type 8 825 -407 422 339 32 25 chr4 167183224 167183504 -17105158 + L1MC4 LINE L1 6705 6986 -1056 25 51 0 0 chr4 167183521 167183560 -17105102 + AT_rich Low_complexity Low_complexity 1 39 0 210 247 49 37 chr4 167184245 167184326 -17104336 + MIR SINE MIR 75 156 -106 25 31 0 0 chr4 167184988 167185020 -17103642 + AT_rich Low_complexity Low_complexity 1 32 0 731 311 44 3 chr4 167185054 167185417 -17103245 - L1MEc LINE L1 -3439 2776 2399 5755 97 25 7 chr4 167185418 167186296 -17102366 - L1P LINE L1 -743 5403 4510 * 10762 97 49 6 chr4 167186289 167187931 -17100731 - L1P LINE L1 -2212 3934 2221 293 197 33 0 chr4 167187932 167187993 -17100669 - L1P3 LINE L1 -6176 285 223 423 311 34 17 chr4 167188001 167188178 -17100484 - L1MEc LINE L1 -6180 216 37 2313 78 14 0 chr4 167188510 167188804 -17099858 - AluSp SINE Alu -15 298 1 1359 180 29 25 chr4 167188925 167189203 -17099459 - AluJo SINE Alu -13 299 21 269 359 16 39 chr4 167189232 167189360 -17099302 - MIR SINE MIR -136 126 2 346 295 52 23 chr4 167189369 167189542 -17099120 - MER5B DNA MER1_type 0 178 1 4947 85 5 0 chr4 167192324 167192981 -17095681 - PABL_A LTR ERV1 0 660 1 31 26 0 0 chr4 167193393 167193431 -17095231 + AT_rich Low_complexity Low_complexity 1 38 0 236 285 24 8 chr4 167194011 167194134 -17094528 + (TA)n Simple_repeat Simple_repeat 1 125 0 6014 149 39 8 chr4 167194229 167196127 -17092535 - L1MA3 LINE L1 0 6305 4341 242 28 0 28 chr4 167196859 167196895 -17091767 + (TA)n Simple_repeat Simple_repeat 2 36 0 355 263 32 6 chr4 167197889 167198045 -17090617 - MER114 LTR ERV 0 648 489 1465 211 18 0 chr4 167198048 167198333 -17090329 + MER47B DNA MER2_type 129 418 0 2325 87 0 10 chr4 167198755 167199067 -17089595 - AluY SINE Alu -2 309 1 12690 152 48 11 chr4 167199442 167201773 -17086889 + Tigger1 DNA MER2_type 2 2418 0 342 0 0 0 chr4 167202096 167202134 -17086528 + (CA)n Simple_repeat Simple_repeat 2 39 0 21 0 0 0 chr4 167202610 167202631 -17086031 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chr4 167203138 167203169 -17085493 + AT_rich Low_complexity Low_complexity 1 31 0 471 147 0 32 chr4 167204260 167204355 -17084307 - L1MB8 LINE L1 0 6178 6087 261 0 0 0 chr4 167205965 167205994 -17082668 + (CA)n Simple_repeat Simple_repeat 1 29 0 207 176 0 0 chr4 167206631 167206665 -17081997 + (CAA)n Simple_repeat Simple_repeat 2 35 0 405 0 0 0 chr4 167207426 167207471 -17081191 + (GA)n Simple_repeat Simple_repeat 2 46 0 297 279 0 23 chr4 167207920 167208006 -17080656 + MER5A DNA MER1_type 22 105 -84 181 311 37 73 chr4 167207941 167208105 -17080557 - MER5A DNA MER1_type -31 158 1 * 288 0 0 0 chr4 167208464 167208496 -17080166 + (CA)n Simple_repeat Simple_repeat 2 33 0 41 21 0 0 chr4 167208559 167208607 -17080055 + AT_rich Low_complexity Low_complexity 1 48 0 346 252 200 19 chr4 167210036 167210191 -17078471 - MER5A DNA MER1_type -3 186 4 266 300 118 0 chr4 167210493 167210603 -17078059 + Charlie1a DNA MER1_type 6 128 -1327 2727 215 73 33 chr4 167210608 167211456 -17077206 + Charlie1a DNA MER1_type 92 973 -482 3295 189 70 6 chr4 167211457 167212144 -17076518 - L1PA16 LINE L1 -184 5984 5254 855 185 65 16 chr4 167212134 167212318 -17076344 + L1PA16 LINE L1 5973 6165 -1 * 315 0 0 0 chr4 167212460 167212495 -17076167 + (TG)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr4 167213471 167213493 -17075169 + AT_rich Low_complexity Low_complexity 1 22 0 224 284 53 0 chr4 167213518 167213613 -17075049 - MIR SINE MIR -3 259 160 1344 227 65 16 chr4 167213616 167213986 -17074676 + MLT2B3 LTR ERVL 3 438 -77 1883 90 78 4 chr4 167213987 167214255 -17074407 + AluSx SINE Alu 7 294 -18 1902 112 52 36 chr4 167214257 167214597 -17074065 + AluY SINE Alu 1 311 0 781 180 12 0 chr4 167214735 167214907 -17073755 + GA-rich Low_complexity Low_complexity 3 176 0 514 209 11 23 chr4 167214939 167215116 -17073546 + GA-rich Low_complexity Low_complexity 6 180 0 317 228 11 22 chr4 167215117 167215209 -17073453 - LTR33 LTR ERVL -21 500 410 2767 93 0 5 chr4 167215365 167215753 -17072909 + L1PA6 LINE L1 3733 4118 -2028 1354 30 0 0 chr4 167215752 167215918 -17072744 - L1P LINE L1 -3063 3083 2918 * 9260 66 0 2 chr4 167215918 167217952 -17070710 + L1PA6 LINE L1 4122 6152 -2 285 298 69 23 chr4 167217997 167218128 -17070534 - L2 LINE L2 -1034 2280 2144 1546 231 42 29 chr4 167218437 167220309 -17068353 + L1MC4a LINE L1 5080 5403 -743 777 165 16 60 chr4 167220309 167220491 -17068171 - MSTD LTR MaLR 0 396 223 2008 260 35 32 chr4 167220497 167220682 -17067980 + L1MB7 LINE L1 5400 5583 -601 1771 141 0 44 chr4 167220682 167220979 -17067683 - AluSx SINE Alu -13 299 16 2008 260 35 32 chr4 167220979 167221539 -17067123 + L1MB7 LINE L1 5583 6147 -37 3432 182 38 29 chr4 167221978 167222920 -17065742 - L1P3 LINE L1 -4535 3039 2081 727 72 0 0 chr4 167222906 167223003 -17065659 - L1P LINE L1 -1582 4564 4468 * 7344 41 0 0 chr4 167223003 167224061 -17064601 + L1PA5 LINE L1 5089 6146 -8 2227 84 0 7 chr4 167224086 167224396 -17064266 + AluY SINE Alu 1 308 -3 1546 234 22 0 chr4 167224402 167224722 -17063940 - L1P3 LINE L1 -6533 1048 722 6087 102 9 14 chr4 167224719 167225965 -17062697 + L1PA12 LINE L1 4929 6168 0 908 316 24 32 chr4 167226597 167227008 -17061654 - L1MEc LINE L1 -5954 442 35 22 35 0 0 chr4 167227029 167227058 -17061604 + AT_rich Low_complexity Low_complexity 1 29 0 339 269 119 6 chr4 167227090 167227250 -17061412 - MER104 DNA Tc2 -1 179 2 881 224 45 88 chr4 167227926 167228400 -17060262 - MER31-int LTR ERV1 -1513 4818 3078 4304 106 111 133 chr4 167228411 167229847 -17058815 - pTR5 LTR ERV1 0 2438 749 973 249 16 26 chr4 167229871 167230176 -17058486 - MER31-int LTR ERV1 -1890 3046 2745 937 251 61 62 chr4 167230373 167231230 -17057432 - MER31-int LTR ERV1 -2466 3865 1529 2748 6 0 0 chr4 167231249 167231560 -17057102 + L1HS LINE L1 5845 6155 0 1524 208 17 22 chr4 167231632 167232167 -17056495 - MER31-int LTR ERV1 -3487 1449 855 185 302 139 70 chr4 167234112 167234284 -17054378 + L2 LINE L2 1837 2020 -1294 288 248 53 18 chr4 167235700 167235713 -17052949 - L1MA10 LINE L1 -2 6332 6320 1929 270 87 9 chr4 167235713 167236462 -17052200 - L1ME1 LINE L1 -3 6163 5357 32 43 0 0 chr4 167236476 167236522 -17052140 + AT_rich Low_complexity Low_complexity 1 46 0 3438 233 46 51 chr4 167236593 167237994 -17050668 - L1MB5 LINE L1 -9 6663 4925 2155 124 7 0 chr4 167237994 167238300 -17050362 - AluSx SINE Alu -4 308 1 3438 233 46 51 chr4 167238300 167238780 -17049882 - L1MB5 LINE L1 -1747 4925 4444 880 192 30 5 chr4 167238788 167238991 -17049671 - L1MB5 LINE L1 -2430 4214 4007 229 224 32 136 chr4 167239001 167239126 -17049536 - L1MB5 LINE L1 -6429 113 2 301 250 11 0 chr4 167239127 167239215 -17049447 - Charlie1 DNA MER1_type -486 2275 2187 3030 233 79 48 chr4 167239229 167240217 -17048445 + L1MC3 LINE L1 6720 7738 -47 247 218 90 0 chr4 167240218 167240296 -17048366 + MER58 DNA MER1_type 112 196 -2224 949 277 40 12 chr4 167240304 167240633 -17048029 - Charlie1 DNA MER1_type -561 2200 1863 447 279 79 0 chr4 167240636 167240776 -17047886 + Charlie1 DNA MER1_type 1705 1855 -906 1076 226 52 7 chr4 167241665 167242103 -17046559 + MLT1D LTR MaLR 27 505 0 460 67 0 0 chr4 167242999 167243059 -17045603 + L1PA8 LINE L1 5124 5183 -963 5183 108 96 62 chr4 167243059 167244161 -17044501 - MER11A LTR ERVK 0 1266 8 6693 74 17 7 chr4 167244161 167245144 -17043518 + L1PA8 LINE L1 5169 6169 -3 409 217 9 17 chr4 167245224 167245575 -17043087 + (TA)n Simple_repeat Simple_repeat 1 347 0 562 209 9 0 chr4 167247294 167247432 -17041230 - FLAM_A SINE Alu 0 139 1 299 317 48 13 chr4 167247512 167247742 -17040920 - L1M4 LINE L1 -3794 2352 2115 21 57 0 0 chr4 167247859 167247894 -17040768 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr4 167247950 167247987 -17040675 + AT_rich Low_complexity Low_complexity 1 37 0 26 0 0 0 chr4 167248935 167248961 -17039701 + AT_rich Low_complexity Low_complexity 1 26 0 903 219 118 90 chr4 167249001 167249358 -17039304 + LTR8 LTR ERV1 9 375 -316 649 229 11 45 chr4 167249389 167249568 -17039094 + FRAM SINE Alu 1 173 -3 659 267 43 51 chr4 167249570 167249825 -17038837 + LTR8 LTR ERV1 382 634 -57 571 290 78 16 chr4 167249895 167250088 -17038574 + HUERS-P1 LTR ERV1 2 206 -6057 2094 252 50 29 chr4 167250167 167251028 -17037634 + HUERS-P1 LTR ERV1 449 1193 -4753 1249 228 42 6 chr4 167251026 167251325 -17037337 + HUERS-P1 LTR ERV1 996 1874 -3006 * 216 0 0 0 chr4 167251327 167251351 -17037311 + (TG)n Simple_repeat Simple_repeat 1 24 0 1798 216 111 126 chr4 167251351 167251556 -17037106 + HUERS-P1 LTR ERV1 751 957 -4166 2158 75 46 0 chr4 167251556 167251837 -17036825 - AluY SINE Alu -17 294 1 1798 216 111 126 chr4 167251837 167252202 -17036460 + HUERS-P1 LTR ERV1 957 660 -4463 2284 127 8 22 chr4 167252202 167252571 -17036091 + THE1B LTR MaLR 1 364 0 1798 216 111 126 chr4 167252571 167252957 -17035705 + HUERS-P1 LTR ERV1 659 1049 -4074 613 197 4 213 chr4 167253000 167253249 -17035413 + HUERS-P1 LTR ERV1 1199 1982 -3728 248 274 14 14 chr4 167253249 167253322 -17035340 + (TATATG)n Simple_repeat Simple_repeat 6 78 0 2361 144 51 63 chr4 167253330 167253859 -17034803 + HUERS-P1 LTR ERV1 2780 3552 -2671 406 160 3 0 chr4 167253857 167253938 -17034724 + HUERS-P1 LTR ERV1 4537 4715 -2822 * 314 161 0 18 chr4 167254015 167254071 -17034591 + HUERS-P1 LTR ERV1 4952 5006 -3114 * 8622 177 64 37 chr4 167254070 167256315 -17032347 + HUERS-P1 LTR ERV1 3426 5790 -524 1120 218 51 17 chr4 167256352 167256670 -17031992 + HUERS-P1 LTR ERV1 4600 6213 -118 746 342 52 0 chr4 167256785 167257054 -17031608 + HUERS-P1 LTR ERV1 5950 6232 -31 1062 209 47 142 chr4 167257084 167257419 -17031243 + LTR8 LTR ERV1 1 289 -402 1842 152 7 3 chr4 167257419 167257708 -17030954 + AluSx SINE Alu 1 290 -22 1062 209 47 142 chr4 167257708 167257794 -17030868 + LTR8 LTR ERV1 289 382 -309 553 255 137 0 chr4 167257818 167257971 -17030691 + FRAM SINE Alu 1 174 -2 460 219 85 77 chr4 167257975 167258188 -17030474 + LTR8A LTR ERV1 403 720 -7 255 31 0 0 chr4 167258622 167258654 -17030008 + (CA)n Simple_repeat Simple_repeat 2 33 0 2490 177 113 7 chr4 167259109 167259647 -17029015 + LTR49 LTR ERV1 1 595 0 26 0 0 0 chr4 167260198 167260224 -17028438 + AT_rich Low_complexity Low_complexity 1 26 0 2273 75 3 10 chr4 167260329 167260637 -17028025 - AluY SINE Alu -5 306 1 473 269 107 7 chr4 167260639 167260788 -17027874 - MER5A DNA MER1_type -4 185 22 230 140 100 0 chr4 167260974 167261024 -17027638 + LTR41 LTR ERVL 6 60 -713 637 283 100 62 chr4 167261866 167262524 -17026138 + LTR50 LTR ERVL 13 782 -13 960 143 13 0 chr4 167262524 167262678 -17025984 - AluSg/x SINE Alu -20 292 137 759 129 0 0 chr4 167262678 167262794 -17025868 + AluSq/x SINE Alu 9 124 -189 467 259 131 54 chr4 167262853 167263059 -17025603 - MER61D LTR ERV1 -10 491 340 892 248 41 21 chr4 167263067 167263357 -17025305 - LTR28 LTR ERV1 -676 344 1 817 336 53 38 chr4 167263626 167264206 -17024456 + ERVL LTR ERVL 2540 3128 -2636 737 364 42 15 chr4 167264232 167264639 -17024023 + ERVL LTR ERVL 4493 4910 -854 538 147 21 11 chr4 167264648 167264743 -17023919 + MER4A LTR ERV1 3 98 -566 1615 158 3 77 chr4 167264743 167265116 -17023546 + MER4A LTR ERV1 261 664 0 518 301 152 32 chr4 167265116 167265524 -17023138 + ERVL LTR ERVL 4919 5375 -389 305 283 69 35 chr4 167265578 167265723 -17022939 - L2 LINE L2 -356 2957 2808 406 341 114 19 chr4 167265728 167266089 -17022573 + L1MC4a LINE L1 5503 5897 -1911 226 240 0 0 chr4 167266102 167266152 -17022510 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 28 71 0 0 chr4 167266259 167266315 -17022347 + AT_rich Low_complexity Low_complexity 1 56 0 180 158 0 0 chr4 167266430 167266468 -17022194 + (TATATG)n Simple_repeat Simple_repeat 3 40 0 290 228 0 22 chr4 167266669 167266761 -17021901 - L1MC4 LINE L1 -1339 6703 6614 345 125 0 0 chr4 167266789 167266845 -17021817 + (TG)n Simple_repeat Simple_repeat 1 56 0 1903 119 48 7 chr4 167266963 167267257 -17021405 + AluSq SINE Alu 1 306 -7 1317 263 89 44 chr4 167268846 167269443 -17019219 + MER97b DNA MER1_type? 1 624 -429 805 228 5 22 chr4 167269445 167269629 -17019033 + AluJo SINE Alu 7 187 -125 857 239 66 7 chr4 167269662 167269934 -17018728 + MER97a DNA MER1_type? 606 893 -1 2155 121 0 0 chr4 167270317 167270614 -17018048 + AluSc SINE Alu 1 297 -12 26 0 0 0 chr4 167270795 167270821 -17017841 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr4 167272545 167272574 -17016088 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 167272978 167272999 -17015663 + AT_rich Low_complexity Low_complexity 1 21 0 204 369 62 0 chr4 167273377 167273507 -17015155 - MIR3 SINE MIR -32 176 39 21 0 0 0 chr4 167274914 167274935 -17013727 + AT_rich Low_complexity Low_complexity 1 21 0 222 206 0 0 chr4 167275519 167275587 -17013075 + (TA)n Simple_repeat Simple_repeat 2 69 0 262 245 0 43 chr4 167275593 167275687 -17012975 + L1MC4 LINE L1 6614 6703 -1339 243 157 0 0 chr4 167275692 167275743 -17012919 + (TA)n Simple_repeat Simple_repeat 1 51 0 324 83 0 0 chr4 167275803 167275851 -17012811 + (TA)n Simple_repeat Simple_repeat 1 48 0 404 143 43 0 chr4 167275854 167275924 -17012738 - MADE1 DNA Mariner -7 73 1 224 389 62 0 chr4 167276233 167276346 -17012316 - L2 LINE L2 -31 3241 3122 238 178 22 0 chr4 167276639 167276684 -17011978 + L1MA7 LINE L1 6060 6105 -186 294 306 91 0 chr4 167278015 167278136 -17010526 - MIR SINE MIR -64 198 67 941 224 20 87 chr4 167279266 167279520 -17009142 - MER8 DNA MER2_type 0 239 3 2214 87 0 20 chr4 167280855 167281154 -17007508 - AluSc SINE Alu -16 293 1 219 77 39 39 chr4 167281163 167281215 -17007447 + CT-rich Low_complexity Low_complexity 1 52 0 386 339 83 35 chr4 167283294 167283524 -17005138 - MIR SINE MIR -1 261 21 390 306 121 72 chr4 167283619 167283992 -17004670 + L2 LINE L2 2922 3312 -1 228 35 0 0 chr4 167284731 167284760 -17003902 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2096 93 7 0 chr4 167284762 167285041 -17003621 - AluSx SINE Alu -31 281 1 238 284 49 0 chr4 167285202 167285283 -17003379 + L1MC4 LINE L1 6615 6699 -1343 * 249 203 0 16 chr4 167285259 167285323 -17003339 - L1MC4 LINE L1 -1339 6703 6641 25 31 0 0 chr4 167285432 167285464 -17003198 + AT_rich Low_complexity Low_complexity 1 32 0 23 97 0 0 chr4 167285701 167285773 -17002889 + AT_rich Low_complexity Low_complexity 1 72 0 452 328 160 25 chr4 167286449 167286848 -17001814 + L2 LINE L2 83 535 -2779 393 369 159 19 chr4 167286820 167287292 -17001370 + L2 LINE L2 887 1424 -1890 * 8120 241 62 43 chr4 167287511 167289642 -16999020 + L1MD1 LINE L1 16 2105 -4531 534 0 0 0 chr4 167289642 167289705 -16998957 - L1PA3 LINE L1 -3 6152 6090 8120 241 62 43 chr4 167289705 167290792 -16997870 + L1MD1 LINE L1 2105 3170 -3466 3251 166 64 10 chr4 167290792 167291467 -16997195 + L1PB4 LINE L1 5446 6156 0 8120 241 62 43 chr4 167291467 167294754 -16993908 + L1MD1 LINE L1 3170 6636 0 660 325 68 52 chr4 167294777 167295204 -16993458 + L2 LINE L2 1702 2135 -1179 1003 163 30 5 chr4 167295362 167295565 -16993097 - L1MB2 LINE L1 -33 6138 5931 1273 208 61 4 chr4 167295688 167295967 -16992695 - L1MCa LINE L1 -6110 316 22 664 269 19 14 chr4 167295971 167296183 -16992479 - L1 LINE L1 -978 5168 4956 1623 152 0 44 chr4 167296214 167296511 -16992151 + MER1B DNA MER1_type 56 339 0 307 227 30 0 chr4 167296517 167296583 -16992079 - L1 LINE L1 -1180 4966 4899 223 154 0 0 chr4 167296864 167296903 -16991759 + T-rich Low_complexity Low_complexity 2 40 0 195 272 11 98 chr4 167297553 167297645 -16991017 - L3 LINE CR1 -949 628 545 34 24 0 0 chr4 167298761 167298802 -16989860 + AT_rich Low_complexity Low_complexity 1 41 0 234 330 27 0 chr4 167298979 167299091 -16989571 - L1MEc LINE L1 -2445 3770 3656 2021 118 0 7 chr4 167299449 167299746 -16988916 - AluY SINE Alu 0 311 17 322 257 60 44 chr4 167300232 167300415 -16988247 - L1MEc LINE L1 -3024 3191 3006 230 172 16 31 chr4 167300415 167300508 -16988154 + (TTATA)n Simple_repeat Simple_repeat 1 91 0 573 291 52 112 chr4 167300508 167301381 -16987281 - L1MEc LINE L1 -3210 3005 2186 288 0 0 0 chr4 167301390 167301422 -16987240 + (TG)n Simple_repeat Simple_repeat 2 33 0 553 230 46 88 chr4 167301685 167301902 -16986760 + MER20 DNA MER1_type 12 219 0 299 397 41 16 chr4 167301999 167302241 -16986421 - MLT1I LTR MaLR -151 258 11 398 282 0 8 chr4 167302652 167302783 -16985879 - L1MEc LINE L1 -5469 927 798 429 291 87 62 chr4 167302816 167303091 -16985571 - L1MEd LINE L1 -5107 1012 731 22 0 0 0 chr4 167303146 167303168 -16985494 + AT_rich Low_complexity Low_complexity 1 22 0 24 85 0 0 chr4 167304567 167304626 -16984036 + AT_rich Low_complexity Low_complexity 1 59 0 569 226 118 49 chr4 167304790 167304994 -16983668 - MER58A DNA MER1_type -1 223 6 241 219 94 31 chr4 167305475 167305571 -16983091 + L2 LINE L2 3151 3252 -61 274 350 8 25 chr4 167305690 167305810 -16982852 + MIR SINE MIR 108 225 -37 468 282 87 70 chr4 167306448 167306806 -16981856 + LTR33 LTR ERVL 137 500 -21 605 228 4 0 chr4 167306807 167307047 -16981615 + CT-rich Low_complexity Low_complexity 1 241 0 1754 242 22 13 chr4 167307153 167307611 -16981051 + L1MC1 LINE L1 5859 6320 -13 241 336 41 8 chr4 167307615 167307737 -16980925 + MIR SINE MIR 134 259 -3 2360 84 0 0 chr4 167308066 167308376 -16980286 - AluY SINE Alu -1 310 1 2542 55 0 0 chr4 167309128 167309439 -16979223 - AluY SINE Alu 0 311 1 310 355 87 22 chr4 167309507 167309738 -16978924 - MIR SINE MIR -13 249 4 2083 200 41 0 chr4 167310132 167310547 -16978115 - MSTB1 LTR MaLR 0 432 1 29 78 0 0 chr4 167311128 167311192 -16977470 + AT_rich Low_complexity Low_complexity 1 64 0 1808 144 0 4 chr4 167312997 167313261 -16975401 - AluSx SINE Alu -49 263 1 3079 164 32 68 chr4 167313261 167313776 -16974886 - L1MC1 LINE L1 -502 5831 5379 2430 4 0 0 chr4 167313776 167314042 -16974620 - AluYa5 SINE Alu -7 304 39 3079 164 32 68 chr4 167314042 167314562 -16974100 - L1MC1 LINE L1 -954 5379 4842 22 0 0 0 chr4 167315229 167315251 -16973411 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 167315805 167315835 -16972827 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr4 167316185 167316209 -16972453 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4 167316496 167316518 -16972144 + AT_rich Low_complexity Low_complexity 1 22 0 1728 153 32 4 chr4 167317162 167317443 -16971219 + AluJb SINE Alu 1 289 -23 9532 161 38 6 chr4 167317655 167319305 -16969357 - Tigger1 DNA MER2_type -716 1702 1 276 323 157 36 chr4 167319329 167319552 -16969110 + MIR SINE MIR 10 259 -3 189 196 0 0 chr4 167319922 167319973 -16968689 + A-rich Low_complexity Low_complexity 1 51 0 2460 50 0 3 chr4 167322111 167322409 -16966253 - AluY SINE Alu -14 297 1 1673 111 19 4 chr4 167322668 167322930 -16965732 + L1PA13 LINE L1 5896 6161 -2 2032 113 0 3 chr4 167322931 167323252 -16965410 + AluSc SINE Alu 1 320 0 3231 253 67 41 chr4 167323260 167324118 -16964544 - L1ME2 LINE L1 -19 6145 5311 1772 120 11 18 chr4 167324118 167324401 -16964261 - AluSx SINE Alu -30 282 2 3231 253 67 41 chr4 167324401 167325901 -16962761 - L1ME2 LINE L1 -853 5311 3745 704 153 108 23 chr4 167325907 167326083 -16962579 + L1MB4 LINE L1 5990 6180 0 327 303 17 51 chr4 167326928 167327106 -16961556 - MLT1K LTR MaLR 0 588 417 392 131 0 16 chr4 167327177 167327238 -16961424 + FLAM SINE Alu 64 123 -10 203 0 0 36 chr4 167327736 167327764 -16960898 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 7318 37 6 0 chr4 167327764 167328812 -16959850 - L1PA4 LINE L1 -16 6139 5090 26 88 0 0 chr4 167329423 167329491 -16959171 + AT_rich Low_complexity Low_complexity 1 68 0 26 0 0 0 chr4 167329541 167329567 -16959095 + AT_rich Low_complexity Low_complexity 1 26 0 2256 90 17 60 chr4 167329857 167330259 -16958403 - L1MA4A LINE L1 -5 6298 5914 23 33 0 0 chr4 167330314 167330344 -16958318 + AT_rich Low_complexity Low_complexity 1 30 0 356 292 185 11 chr4 167330463 167330723 -16957939 + L1MC/D LINE L1 5343 5647 -2161 30 0 0 0 chr4 167330769 167330799 -16957863 + AT_rich Low_complexity Low_complexity 1 30 0 33 43 0 0 chr4 167331046 167331093 -16957569 + AT_rich Low_complexity Low_complexity 1 47 0 21 57 0 0 chr4 167333154 167333189 -16955473 + AT_rich Low_complexity Low_complexity 1 35 0 31 0 0 0 chr4 167333368 167333399 -16955263 + AT_rich Low_complexity Low_complexity 1 31 0 430 289 97 27 chr4 167333676 167333974 -16954688 - L1ME2 LINE L1 -10 6154 5836 279 273 11 11 chr4 167334008 167334096 -16954566 - Charlie6 DNA MER1_type 0 3500 3413 668 134 0 25 chr4 167334136 167334255 -16954407 + THE1A LTR MaLR 1 116 -239 2064 236 55 52 chr4 167334493 167334621 -16954041 - Charlie6 DNA MER1_type 0 3500 3374 2567 83 3 25 chr4 167334621 167334984 -16953678 + THE1A LTR MaLR 1 355 0 2064 236 55 52 chr4 167334984 167335741 -16952921 - Charlie6 DNA MER1_type -126 3374 2612 2574 259 56 18 chr4 167335760 167336582 -16952080 - Charlie6 DNA MER1_type -1002 2498 1646 39 60 0 0 chr4 167336728 167336795 -16951867 + AT_rich Low_complexity Low_complexity 1 67 0 1494 266 45 74 chr4 167336824 167337319 -16951343 - Charlie6 DNA MER1_type -2621 879 406 2407 70 0 0 chr4 167337319 167337617 -16951045 + AluY SINE Alu 1 298 -13 1494 266 45 74 chr4 167337617 167337767 -16950895 - Charlie6 DNA MER1_type -3094 406 253 23 33 0 0 chr4 167338585 167338615 -16950047 + AT_rich Low_complexity Low_complexity 1 30 0 800 240 108 15 chr4 167338698 167339031 -16949631 - L1MDa LINE L1 -4325 2215 1852 897 286 50 20 chr4 167339085 167339484 -16949178 - L1MDa LINE L1 -5234 1309 899 2730 260 44 24 chr4 167340303 167342149 -16946513 + L1MB8 LINE L1 4285 6175 -3 559 310 21 43 chr4 167342178 167342459 -16946203 - L1MDa LINE L1 -6210 330 56 28 29 0 0 chr4 167342504 167342539 -16946123 + AT_rich Low_complexity Low_complexity 1 35 0 575 99 132 0 chr4 167343336 167343427 -16945235 - MER39B LTR ERV1 -547 106 4 23 0 0 0 chr4 167344139 167344162 -16944500 + AT_rich Low_complexity Low_complexity 1 23 0 300 350 98 0 chr4 167344319 167344462 -16944200 - MIR3 SINE MIR -15 193 37 1919 156 0 0 chr4 167345980 167346281 -16942381 - AluSx SINE Alu -11 301 1 26 50 0 0 chr4 167346402 167346442 -16942220 + AT_rich Low_complexity Low_complexity 1 40 0 31 76 0 0 chr4 167346498 167346564 -16942098 + AT_rich Low_complexity Low_complexity 1 66 0 1347 153 79 95 chr4 167347542 167347699 -16940963 + THE1C LTR MaLR 1 159 -216 2078 135 0 0 chr4 167347699 167348002 -16940660 - AluSx SINE Alu -9 303 1 1347 153 79 95 chr4 167348002 167348222 -16940440 + THE1C LTR MaLR 159 372 -3 9080 144 59 3 chr4 167348225 167349722 -16938940 + THE1C-int LTR MaLR 1 1580 0 2137 152 5 24 chr4 167349722 167350104 -16938558 + THE1C LTR MaLR 1 375 0 297 279 9 24 chr4 167350504 167350607 -16938055 - MER90 LTR ERV1 0 614 471 436 202 22 0 chr4 167351071 167351160 -16937502 + MER89 LTR ERV1 1 91 -468 299 178 10 0 chr4 167351207 167351308 -16937354 + (TA)n Simple_repeat Simple_repeat 1 102 0 1654 237 44 5 chr4 167351310 167351688 -16936974 + MER89 LTR ERV1 139 535 -24 198 0 0 0 chr4 167351688 167351710 -16936952 + (TTTTC)n Simple_repeat Simple_repeat 2 23 0 1654 237 44 5 chr4 167351710 167351736 -16936926 + MER89 LTR ERV1 535 559 0 420 228 0 0 chr4 167351796 167351875 -16936787 - AluJ/FLAM SINE Alu -228 84 6 1230 273 83 5 chr4 167351879 167352289 -16936373 - MER90 LTR ERV1 -171 443 2 27 0 0 26 chr4 167352465 167352482 -16936180 + AT_rich Low_complexity Low_complexity 1 17 -20 1573 115 26 4 chr4 167352482 167352716 -16935946 - AluSq SINE Alu -21 292 54 27 0 0 26 chr4 167352716 167352736 -16935926 + AT_rich Low_complexity Low_complexity 17 37 0 734 130 0 0 chr4 167353083 167353191 -16935471 + AluSq/x SINE Alu 1 108 -204 207 0 0 0 chr4 167353211 167353234 -16935428 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 213 39 0 0 chr4 167353273 167353299 -16935363 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr4 167354138 167354159 -16934503 + AT_rich Low_complexity Low_complexity 1 21 0 629 326 99 5 chr4 167355354 167355575 -16933087 - MIR SINE MIR -4 258 17 252 293 19 38 chr4 167355589 167355695 -16932967 - MER20B DNA MER1_type -492 291 188 23 33 0 0 chr4 167356667 167356697 -16931965 + AT_rich Low_complexity Low_complexity 1 30 0 1967 139 0 32 chr4 167357540 167357849 -16930813 - AluSx SINE Alu -13 299 1 1936 223 46 0 chr4 167358908 167359321 -16929341 + MSTB1 LTR MaLR 1 432 0 6944 215 29 51 chr4 167359369 167362825 -16925837 + L1MA5 LINE L1 1368 4742 -2106 1160 193 78 46 chr4 167362835 167363205 -16925457 - MSTA LTR MaLR 0 428 4 4958 213 28 14 chr4 167363213 167364723 -16923939 + L1MA5 LINE L1 4772 6319 -683 1992 110 0 0 chr4 167364723 167365005 -16923657 + AluSg SINE Alu 27 308 -2 4958 213 28 14 chr4 167365005 167365699 -16922963 + L1MA5 LINE L1 6319 7002 0 1133 254 24 6 chr4 167366266 167366557 -16922105 - L1MC5 LINE L1 -24 7956 7698 1431 191 13 80 chr4 167366564 167366950 -16921712 + MLT1B LTR MaLR 1 344 -46 1496 255 50 41 chr4 167369233 167370222 -16918440 + L1ME1 LINE L1 4998 5990 -176 21 36 0 0 chr4 167370615 167370643 -16918019 + AT_rich Low_complexity Low_complexity 1 28 0 317 285 55 55 chr4 167370677 167370877 -16917785 + L1MEc LINE L1 2200 2399 -3997 306 98 0 0 chr4 167371032 167371073 -16917589 - LTR2B LTR ERV1 0 490 450 224 321 0 48 chr4 167371189 167371273 -16917389 + MIR SINE MIR 180 259 -3 3643 158 13 3 chr4 167372443 167373070 -16915592 - MER41B LTR ERV1 -2 633 1 25 51 0 0 chr4 167373098 167373137 -16915525 + AT_rich Low_complexity Low_complexity 1 39 0 438 275 0 88 chr4 167373226 167373386 -16915276 + MLT1D LTR MaLR 4 149 -356 351 316 61 52 chr4 167373540 167373869 -16914793 - L1MCa LINE L1 -4928 1498 1167 1553 199 39 69 chr4 167373984 167374270 -16914392 - LTR2 LTR ERV1 -29 420 150 2677 9 3 34 chr4 167374270 167374591 -16914071 - AluYb8 SINE Alu -7 311 1 1553 199 39 69 chr4 167374591 167374737 -16913925 - LTR2 LTR ERV1 -299 150 1 1150 186 166 36 chr4 167374780 167375081 -16913581 + MSTD LTR MaLR 1 340 -56 1221 126 30 5 chr4 167375081 167375280 -16913382 + LTR9B LTR ERV1 357 560 -84 403 167 0 0 chr4 167375299 167375371 -16913291 + MSTD LTR MaLR 384 455 -2 553 285 133 57 chr4 167375383 167376156 -16912506 + L1MEc LINE L1 2650 3481 -2734 26 64 0 0 chr4 167376162 167376209 -16912453 + AT_rich Low_complexity Low_complexity 1 47 0 471 272 66 33 chr4 167376441 167376746 -16911916 - L1ME LINE L1 -589 5573 5259 878 275 34 11 chr4 167376803 167377065 -16911597 - LTR40a LTR ERVL -7 512 245 264 233 0 14 chr4 167377413 167377486 -16911176 + L1ME3A LINE L1 5798 5869 -301 25 51 0 0 chr4 167377527 167377566 -16911096 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr4 167378162 167378185 -16910477 + AT_rich Low_complexity Low_complexity 1 23 0 1614 162 24 92 chr4 167378500 167378756 -16909906 - MER7A DNA MER2_type -2693 345 122 1218 200 3 104 chr4 167378756 167379091 -16909571 + AluJo SINE Alu 2 302 0 1614 162 24 92 chr4 167379091 167379205 -16909457 - MER7A DNA MER2_type -2916 122 2 377 270 61 14 chr4 167379719 167379867 -16908795 - AluJb SINE Alu -8 294 140 558 161 14 16 chr4 167379991 167380130 -16908532 + MLT1D LTR MaLR 407 503 -2 590 327 14 23 chr4 167380701 167380921 -16907741 - MIR SINE MIR -3 259 42 272 91 23 0 chr4 167380933 167380977 -16907685 + (TG)n Simple_repeat Simple_repeat 1 45 0 2142 74 67 0 chr4 167381503 167381787 -16906875 - AluY SINE Alu -8 303 1 1574 229 32 68 chr4 167384940 167385263 -16903399 + MLT1D LTR MaLR 27 327 -178 2479 148 19 21 chr4 167385263 167385688 -16902974 - MSTC LTR MaLR 0 428 5 1574 229 32 68 chr4 167385688 167385861 -16902801 + MLT1D LTR MaLR 327 505 0 29 94 0 0 chr4 167386111 167386196 -16902466 + AT_rich Low_complexity Low_complexity 1 85 0 265 278 0 0 chr4 167386765 167386819 -16901843 - MLT1J1 LTR MaLR -296 150 97 1699 183 0 13 chr4 167387046 167387346 -16901316 - AluJb SINE Alu -13 299 4 2225 103 0 10 chr4 167387727 167388028 -16900634 + AluSx SINE Alu 1 298 -14 22 0 0 0 chr4 167388032 167388054 -16900608 + AT_rich Low_complexity Low_complexity 1 22 0 236 136 68 0 chr4 167388745 167388789 -16899873 + L1ME3A LINE L1 6034 6080 -90 21 36 0 0 chr4 167388832 167388860 -16899802 + AT_rich Low_complexity Low_complexity 1 28 0 1748 122 199 6 chr4 167388987 167389323 -16899339 - MER57A LTR ERV1 0 403 3 553 340 58 46 chr4 167390292 167390686 -16897976 + HAL1b LINE L1 39 437 -911 26 30 0 0 chr4 167390725 167390758 -16897904 + AT_rich Low_complexity Low_complexity 1 33 0 21 82 0 0 chr4 167391473 167391522 -16897140 + AT_rich Low_complexity Low_complexity 1 49 0 1776 152 69 26 chr4 167393650 167393999 -16894663 - THE1B LTR MaLR 0 364 1 429 301 20 13 chr4 167394140 167394293 -16894369 + MER70-int LTR ERVL 418 571 -4452 2090 280 79 32 chr4 167395195 167395942 -16892720 + MER70-int LTR ERVL 567 1348 -3675 1738 336 48 30 chr4 167396332 167397406 -16891256 + MER70-int LTR ERVL 2019 3745 -1785 1814 322 24 2 chr4 167397648 167398189 -16890473 + MER70-int LTR ERVL 2974 3526 -1497 773 311 57 17 chr4 167399247 167399601 -16889061 - MER93a LTR ERV1 0 402 35 256 274 42 11 chr4 167400153 167400248 -16888414 - HUERS-P3 LTR ERV1 -450 8469 8372 1942 160 0 7 chr4 167400525 167400832 -16887830 - AluJb SINE Alu -7 305 1 2520 209 45 15 chr4 167400996 167401486 -16887176 + MLT2B3 LTR ERVL 3 512 -42 541 0 29 0 chr4 167401486 167401555 -16887107 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 2520 209 45 15 chr4 167401555 167401600 -16887062 + MLT2B3 LTR ERVL 512 554 0 192 77 0 0 chr4 167402052 167402078 -16886584 + (TA)n Simple_repeat Simple_repeat 2 27 0 4069 169 111 9 chr4 167402395 167403199 -16885463 - MER21A LTR ERV1 -30 901 16 195 42 0 0 chr4 167403246 167403270 -16885392 + (GA)n Simple_repeat Simple_repeat 1 24 0 252 0 0 0 chr4 167403601 167403629 -16885033 + (A)n Simple_repeat Simple_repeat 1 28 0 3150 287 50 24 chr4 167403728 167404979 -16883683 + L1MEc LINE L1 50 1333 -5063 1838 116 97 111 chr4 167405009 167405357 -16883305 - MSTC LTR MaLR 0 428 86 605 210 224 0 chr4 167405357 167405500 -16883162 - FAM SINE Alu 0 175 1 1838 116 97 111 chr4 167405500 167405582 -16883080 - MSTC LTR MaLR -342 86 4 1033 282 58 34 chr4 167405609 167406083 -16882579 + L1MEc LINE L1 1341 1869 -4428 1005 247 44 39 chr4 167406266 167406650 -16882012 + L1M4 LINE L1 4749 5134 -1012 248 279 44 84 chr4 167406679 167406905 -16881757 + L2 LINE L2 2952 3168 -145 769 248 73 46 chr4 167407496 167407823 -16880839 + MER46C DNA MER2_type 2 337 -1 4122 240 93 49 chr4 167408636 167409857 -16878805 - L1MC3 LINE L1 0 7785 6473 2018 113 0 18 chr4 167409857 167410164 -16878498 + AluSg1 SINE Alu 1 302 0 4122 240 93 49 chr4 167410164 167410559 -16878103 - L1MC3 LINE L1 -1312 6473 6097 1328 166 0 0 chr4 167410581 167410792 -16877870 + AluJb SINE Alu 87 297 -15 22 35 0 0 chr4 167411094 167411123 -16877539 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr4 167411139 167411169 -16877493 + AT_rich Low_complexity Low_complexity 1 30 0 309 214 14 57 chr4 167411239 167411309 -16877353 + MIR SINE MIR 65 131 -131 252 303 0 0 chr4 167412052 167412184 -16876478 + (TA)n Simple_repeat Simple_repeat 2 133 0 674 278 124 0 chr4 167412870 167413079 -16875583 + MIR SINE MIR 28 262 0 999 275 42 75 chr4 167413348 167413520 -16875142 + MER69 DNA AcHobo 289 465 -2061 2231 109 0 3 chr4 167413520 167413832 -16874830 - AluY SINE Alu 0 311 1 999 275 42 75 chr4 167413832 167414059 -16874603 + MER69 DNA AcHobo 465 675 -1851 932 248 150 32 chr4 167414096 167414289 -16874373 + MER69 DNA AcHobo 1653 1822 -704 2211 147 25 0 chr4 167414289 167414644 -16874018 + THE1B LTR MaLR 1 364 0 932 248 150 32 chr4 167414644 167415137 -16873525 + MER69 DNA AcHobo 1822 2420 -106 1431 199 14 31 chr4 167415139 167415431 -16873231 + AluJo SINE Alu 1 287 -25 23 33 0 0 chr4 167415431 167415461 -16873201 + AT_rich Low_complexity Low_complexity 1 30 0 325 200 18 127 chr4 167415471 167415581 -16873081 + MER69 DNA AcHobo 2416 2513 -13 452 306 44 44 chr4 167415787 167416039 -16872623 - L3 LINE CR1 -559 1018 767 923 190 87 105 chr4 167416205 167416584 -16872078 + MLT1A2 LTR MaLR 5 374 0 520 249 80 98 chr4 167417019 167417244 -16871418 + MIR SINE MIR 37 257 -5 1231 215 80 50 chr4 167417655 167417994 -16870668 + MLT1A1 LTR MaLR 17 365 0 495 192 50 0 chr4 167417994 167418093 -16870569 + MLT1A1-int LTR MaLR 1 104 -1631 2662 210 12 62 chr4 167418098 167418674 -16869988 + MLT2B3 LTR ERVL 6 552 -2 686 262 0 18 chr4 167418676 167418840 -16869822 + MLT1A1-int LTR MaLR 100 260 -1475 1144 109 223 50 chr4 167418885 167419123 -16869539 + AluSx SINE Alu 32 310 -2 354 215 194 8 chr4 167419126 167419253 -16869409 + MLT1A1-int LTR MaLR 549 707 -664 277 261 0 14 chr4 167419363 167419432 -16869230 + MLT1A1-int LTR MaLR 676 743 -992 1585 233 72 5 chr4 167419504 167419894 -16868768 + MLT1A1-int LTR MaLR 1313 1728 -7 923 228 58 79 chr4 167419900 167420278 -16868384 + MLT1A2 LTR MaLR 1 370 -4 611 305 61 7 chr4 167421364 167421719 -16866943 + L2 LINE L2 2636 3063 -250 1053 277 100 48 chr4 167422330 167422788 -16865874 + MLT2B1 LTR ERVL 1 482 -38 2415 215 52 8 chr4 167422793 167423291 -16865371 + MLT2B3 LTR ERVL 1 520 -34 718 174 30 11 chr4 167423298 167423575 -16865087 + (TCCA)n Simple_repeat Simple_repeat 1 282 0 313 136 0 45 chr4 167423578 167423644 -16865018 + MLT2B1 LTR ERVL 458 520 0 731 217 152 20 chr4 167424319 167424517 -16864145 - MER58A DNA MER1_type 0 224 1 2231 109 0 6 chr4 167424551 167424862 -16863800 - AluSx SINE Alu -3 309 1 2422 233 54 33 chr4 167425073 167425778 -16862884 + MER72 LTR ERV1 1 720 -2 243 307 0 0 chr4 167426075 167426150 -16862512 + L1MC4 LINE L1 6631 6705 -1337 207 217 0 17 chr4 167426359 167426419 -16862243 + (TA)n Simple_repeat Simple_repeat 2 60 0 204 331 158 72 chr4 167426958 167427305 -16861357 + L2 LINE L2 2454 2830 -484 228 350 23 75 chr4 167427311 167427525 -16861137 + L2 LINE L2 3109 3311 -2 1958 321 51 57 chr4 167427571 167427821 -16860841 - L2 LINE L2 -7 3306 3056 2310 67 0 3 chr4 167427821 167428129 -16860533 + AluY SINE Alu 1 307 0 1958 321 51 57 chr4 167428129 167429036 -16859626 - L2 LINE L2 -257 3056 2157 2575 45 0 13 chr4 167429036 167429344 -16859318 + AluY SINE Alu 1 304 -7 1958 321 51 57 chr4 167429344 167429568 -16859094 - L2 LINE L2 -1156 2157 1933 2213 98 0 7 chr4 167430178 167430483 -16858179 - AluY SINE Alu -4 307 5 2678 0 0 7 chr4 167431469 167431761 -16856901 - AluYa5 SINE Alu -21 290 1 580 246 48 37 chr4 167431886 167432073 -16856589 + L1M2 LINE L1 5 193 -6656 348 189 0 85 chr4 167432065 167432171 -16856491 + L1PB4 LINE L1 6060 6156 0 * 1438 182 64 7 chr4 167432679 167432959 -16855703 - AluJo SINE Alu -16 296 1 246 62 0 0 chr4 167433025 167433057 -16855605 + (TG)n Simple_repeat Simple_repeat 1 32 0 1763 139 37 4 chr4 167433060 167433333 -16855329 - AluSx SINE Alu -30 282 1 236 0 0 0 chr4 167433554 167433586 -16855076 - L1PA2 LINE L1 -6 6149 6118 210 37 0 0 chr4 167433586 167433613 -16855049 + (TAAAAA)n Simple_repeat Simple_repeat 3 29 0 252 324 15 59 chr4 167434539 167434675 -16853987 + MIR SINE MIR 9 138 -124 408 308 8 0 chr4 167436347 167436464 -16852198 + MIR SINE MIR 37 154 -108 1545 82 0 14 chr4 167436495 167436702 -16851960 + AluSq SINE Alu 16 219 -94 670 144 36 0 chr4 167436715 167436826 -16851836 + AluSg/x SINE Alu 183 297 -15 4279 68 56 19 chr4 167438241 167438829 -16849833 + LTR66 LTR ERVL 1 610 0 269 320 0 0 chr4 167440384 167440459 -16848203 + MER57A LTR ERV1 42 116 -287 3803 91 12 0 chr4 167440468 167440987 -16847675 + L1PA13 LINE L1 5426 5950 -213 5175 194 20 16 chr4 167441091 167442227 -16846435 + L1M2 LINE L1 1239 2379 -4470 530 333 74 17 chr4 167442606 167442837 -16845825 + MIR SINE MIR 16 259 -3 360 138 0 0 chr4 167442844 167442909 -16845753 + (TC)n Simple_repeat Simple_repeat 2 66 0 386 301 95 53 chr4 167443015 167443394 -16845268 - L1MEc LINE L1 -4573 1823 1429 2780 218 5 14 chr4 167443424 167443984 -16844678 - MLT1E3 LTR MaLR 0 624 70 305 261 43 0 chr4 167444639 167444754 -16843908 - L1MEc LINE L1 -5083 1122 1003 2624 152 37 23 chr4 167444761 167445275 -16843387 - L1MA9 LINE L1 -5 6307 5787 315 0 0 0 chr4 167445288 167445323 -16843339 + (TG)n Simple_repeat Simple_repeat 2 36 0 5958 173 30 15 chr4 167445326 167446539 -16842123 - Tigger3b DNA MER2_type 0 1231 1 396 0 0 0 chr4 167446541 167446585 -16842077 + (TA)n Simple_repeat Simple_repeat 1 44 0 274 148 33 49 chr4 167446586 167446647 -16842015 + L1M3 LINE L1 5734 5793 -375 340 171 24 0 chr4 167446647 167446729 -16841933 + (TA)n Simple_repeat Simple_repeat 1 84 0 269 209 47 23 chr4 167446730 167446816 -16841846 - L1MC4 LINE L1 -1341 6701 6614 363 311 83 64 chr4 167447440 167447800 -16840862 + L1MCa LINE L1 86 452 -5974 1100 153 14 18 chr4 167448297 167448519 -16840143 + L1MA9 LINE L1 6079 6299 -13 538 282 103 30 chr4 167448547 167448983 -16839679 + L1MCa LINE L1 1818 2285 -4322 342 309 8 32 chr4 167449984 167450107 -16838555 + LTR33 LTR ERVL 46 165 -356 334 295 55 72 chr4 167450121 167450358 -16838304 + LTR33 LTR ERVL 289 521 0 2447 129 35 46 chr4 167450452 167450653 -16838009 + MSTA LTR MaLR 1 203 -225 1754 171 4 0 chr4 167450653 167450934 -16837728 + AluJb SINE Alu 14 295 -17 2447 129 35 46 chr4 167450934 167451165 -16837497 + MSTA LTR MaLR 203 428 0 384 321 62 59 chr4 167451697 167452258 -16836404 + ERVL LTR ERVL 836 1398 -4366 1142 194 5 145 chr4 167452801 167453173 -16835489 - LTR8A LTR ERV1 -374 353 34 265 233 0 0 chr4 167453203 167453263 -16835399 + CT-rich Low_complexity Low_complexity 1 60 0 1891 125 31 11 chr4 167455373 167455660 -16833002 + AluSx SINE Alu 2 294 -18 23 78 0 0 chr4 167455931 167455982 -16832680 + AT_rich Low_complexity Low_complexity 1 51 0 23 54 0 0 chr4 167456747 167456784 -16831878 + AT_rich Low_complexity Low_complexity 1 37 0 1509 184 7 18 chr4 167456789 167457067 -16831595 - AluJo SINE Alu -37 275 1 2129 207 5 0 chr4 167457967 167458412 -16830250 - L1PB1 LINE L1 -1731 4415 3969 4428 167 21 6 chr4 167458412 167459679 -16828983 + L1PB1 LINE L1 4406 5682 -483 198 0 0 0 chr4 167459679 167459701 -16828961 + (TA)n Simple_repeat Simple_repeat 2 23 0 1894 116 37 4 chr4 167459701 167459969 -16828693 - AluSx SINE Alu -27 285 9 1143 234 160 18 chr4 167459981 167460374 -16828288 + L1MC4 LINE L1 7450 7898 -144 288 0 0 0 chr4 167460849 167460881 -16827781 + (CA)n Simple_repeat Simple_repeat 2 33 0 419 71 0 0 chr4 167460939 167460995 -16827667 - Alu SINE Alu -257 56 1 748 177 0 0 chr4 167461384 167461525 -16827137 + L1PB1 LINE L1 6011 6151 0 22 35 0 0 chr4 167462439 167462468 -16826194 + AT_rich Low_complexity Low_complexity 1 29 0 5703 67 44 3 chr4 167462842 167463591 -16825071 - LTR17 LTR ERV1 0 780 1 1887 145 14 0 chr4 167464505 167464631 -16824031 + AluSx SINE Alu 1 124 -188 225 0 0 0 chr4 167464631 167464656 -16824006 + (CAA)n Simple_repeat Simple_repeat 3 27 0 1887 145 14 0 chr4 167464656 167464818 -16823844 + AluSx SINE Alu 124 293 -19 34 84 0 0 chr4 167464985 167465068 -16823594 + AT_rich Low_complexity Low_complexity 1 83 0 398 20 20 0 chr4 167465098 167465149 -16823513 + (TG)n Simple_repeat Simple_repeat 1 52 0 866 54 0 0 chr4 167465342 167465454 -16823208 + L1PA4 LINE L1 6041 6152 -3 655 311 102 11 chr4 167465672 167465955 -16822707 - MLT1J LTR MaLR -155 356 48 1184 200 0 118 chr4 167467766 167468106 -16820556 - AluJo SINE Alu -1 301 2 4322 158 46 0 chr4 167468109 167468869 -16819793 - L1PA16 LINE L1 -6 6160 5366 28 29 0 0 chr4 167469278 167469313 -16819349 + AT_rich Low_complexity Low_complexity 1 35 0 991 141 101 50 chr4 167469538 167469611 -16819051 - MSTA LTR MaLR 0 428 360 2331 57 40 7 chr4 167469611 167469908 -16818754 + AluY SINE Alu 1 307 -4 991 141 101 50 chr4 167469908 167470033 -16818629 - MSTA LTR MaLR -68 360 220 455 235 0 20 chr4 167470089 167470191 -16818471 + MLT1J2 LTR MaLR 25 124 -326 1002 128 151 0 chr4 167470221 167470400 -16818262 - MSTA LTR MaLR -222 206 1 448 260 58 13 chr4 167470601 167470755 -16817907 + MIR SINE MIR 72 232 -30 700 308 184 20 chr4 167470898 167471546 -16817116 - L2 LINE L2 -1 3312 2572 2891 215 56 0 chr4 167472708 167473369 -16815293 - L1PB4 LINE L1 -1908 4238 3541 4412 200 30 16 chr4 167473374 167475233 -16813429 + L1PB4 LINE L1 4267 6153 -3 584 216 0 0 chr4 167475666 167475768 -16812894 + Tigger3b DNA MER2_type 1 102 -1129 * 2659 99 26 14 chr4 167475767 167476173 -16812489 + Tigger3b DNA MER2_type 275 688 -2340 2165 129 0 0 chr4 167476173 167476468 -16812194 + AluSg SINE Alu 1 295 -15 2659 99 26 14 chr4 167476468 167476487 -16812175 + Tigger3b DNA MER2_type 688 705 -526 200 200 0 0 chr4 167476524 167476559 -16812103 + (ATG)n Simple_repeat Simple_repeat 1 35 0 837 274 70 4 chr4 167476785 167477044 -16811618 + LTR16A1 LTR ERVL 168 443 -14 297 109 0 0 chr4 167477863 167477909 -16810753 + (TG)n Simple_repeat Simple_repeat 2 47 0 200 214 18 0 chr4 167478340 167478396 -16810266 + (CAAA)n Simple_repeat Simple_repeat 4 60 0 26 0 0 0 chr4 167479450 167479476 -16809186 + AT_rich Low_complexity Low_complexity 1 26 0 9621 209 18 27 chr4 167480138 167482572 -16806090 - L1 LINE L1 -1513 4633 2222 7550 216 31 14 chr4 167482584 167484360 -16804302 - L1PBa LINE L1 -5219 1644 3 903 311 73 41 chr4 167484500 167484941 -16803721 + L1MDa LINE L1 8 462 -6078 5500 269 45 56 chr4 167485063 167485634 -16803028 + L1MDa LINE L1 2271 2847 -3693 1908 132 11 0 chr4 167485634 167485945 -16802717 + AluSx SINE Alu 1 314 0 5500 269 45 56 chr4 167485945 167488109 -16800553 + L1MDa LINE L1 2847 4965 -1575 1915 126 0 11 chr4 167488109 167488380 -16800282 + AluSq SINE Alu 1 268 -45 5500 269 45 56 chr4 167488380 167488874 -16799788 + L1MDa LINE L1 4965 5463 -1077 236 130 22 0 chr4 167489139 167489185 -16799477 + (TG)n Simple_repeat Simple_repeat 2 48 0 620 265 44 17 chr4 167490868 167491049 -16797613 - MER45C DNA AcHobo -1 952 767 268 283 22 22 chr4 167491183 167491275 -16797387 - MER45C DNA AcHobo -861 92 1 30 59 0 0 chr4 167491401 167491452 -16797210 + AT_rich Low_complexity Low_complexity 1 51 0 1430 154 49 25 chr4 167492286 167492572 -16796090 - L1M2 LINE L1 -473 5818 5526 1588 160 91 27 chr4 167493002 167493333 -16795329 - THE1A LTR MaLR -3 352 1 1518 229 78 52 chr4 167494408 167494803 -16793859 + LTR40a LTR ERVL 6 418 -101 3516 149 52 7 chr4 167494803 167495419 -16793243 + LTR9B LTR ERV1 1 644 0 1518 229 78 52 chr4 167495419 167495524 -16793138 + LTR40a LTR ERVL 418 519 0 351 313 52 15 chr4 167495691 167495825 -16792837 - MIR3 SINE MIR -49 159 21 1336 254 57 73 chr4 167495860 167496418 -16792244 + MLT1H1 LTR MaLR 7 555 0 22 70 0 0 chr4 167496704 167496747 -16791915 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr4 167496833 167496861 -16791801 + AT_rich Low_complexity Low_complexity 1 28 0 15545 191 39 39 chr4 167497711 167501932 -16786730 + L1P3 LINE L1 20 4330 -2131 3593 136 12 74 chr4 167501903 167502644 -16786018 + L1MA7 LINE L1 5910 6604 -2 * 254 327 88 46 chr4 167503316 167503533 -16785129 + L2 LINE L2 3085 3310 -3 1184 200 0 118 chr4 167506211 167506551 -16782111 - AluJo SINE Alu -1 301 2 4322 158 46 0 chr4 167506554 167507314 -16781348 - L1PA16 LINE L1 -6 6160 5366 28 29 0 0 chr4 167507723 167507758 -16780904 + AT_rich Low_complexity Low_complexity 1 35 0 442 153 0 0 chr4 167507983 167508055 -16780607 - MSTA LTR MaLR 0 428 357 1759 96 48 4 chr4 167508055 167508304 -16780358 + AluY SINE Alu 1 260 -51 208 216 0 0 chr4 167508316 167508353 -16780309 + G-rich Low_complexity Low_complexity 1 37 0 770 246 29 117 chr4 167508353 167508808 -16779854 + L1M4 LINE L1 4655 5069 -1077 236 130 22 0 chr4 167509073 167509119 -16779543 + (TG)n Simple_repeat Simple_repeat 2 48 0 604 247 43 12 chr4 167510802 167510964 -16777698 - MER45 DNA AcHobo -1 1580 1414 268 283 22 22 chr4 167511116 167511208 -16777454 - MER45 DNA AcHobo -861 92 1 30 59 0 0 chr4 167511334 167511385 -16777277 + AT_rich Low_complexity Low_complexity 1 51 0 247 218 81 11 chr4 167512404 167512491 -16776171 - MER70B LTR ERVL -3 575 483 1152 278 29 12 chr4 167512805 167513150 -16775512 + MER93a LTR ERV1 50 400 -2 434 316 48 19 chr4 167513181 167513390 -16775272 + MER93a-int LTR ERV1 35 249 -7288 299 220 55 44 chr4 167513743 167513834 -16774828 + MER93a-int LTR ERV1 868 959 -5842 296 152 0 0 chr4 167514017 167514063 -16774599 + MER31-int LTR ERV1 820 865 -4071 668 208 85 60 chr4 167514229 167514650 -16774012 + MER31-int LTR ERV1 885 2964 -379 439 251 52 21 chr4 167514726 167514917 -16773745 + MER31-int LTR ERV1 1627 1823 -3113 490 230 24 24 chr4 167514923 167515049 -16773613 + FLAM_C SINE Alu 1 126 -7 27 29 0 0 chr4 167515227 167515261 -16773401 + AT_rich Low_complexity Low_complexity 1 34 0 969 196 98 48 chr4 167515334 167515774 -16772888 + LTR27 LTR ERV1 1 511 -125 489 254 85 0 chr4 167515807 167515937 -16772725 + LTR27 LTR ERV1 494 634 -2 588 230 121 59 chr4 167515942 167516181 -16772481 + LTR27-int LTR ERV1 1 254 -6837 * 5097 197 58 41 chr4 167516176 167517424 -16771238 + LTR27-int LTR ERV1 409 4782 -435 368 277 12 0 chr4 167517431 167517514 -16771148 + LTR27-int LTR ERV1 3574 3657 -3548 14753 165 32 31 chr4 167517514 167521932 -16766730 + LTR27-int LTR ERV1 609 6993 -3 825 216 74 30 chr4 167521935 167522400 -16766262 + LTR27 LTR ERV1 2 1262 -140 357 288 7 41 chr4 167522407 167522553 -16766109 + LTR27 LTR ERV1 496 636 0 2440 57 3 0 chr4 167522570 167522871 -16765791 + AluY SINE Alu 1 302 -9 446 183 0 0 chr4 167522879 167522961 -16765701 + LTR49-int LTR ERV1 3666 3747 -1189 273 273 0 0 chr4 167522960 167523026 -16765636 + LTR49-int LTR ERV1 5330 5395 -936 * 888 231 146 88 chr4 167523178 167523639 -16765023 + LTR49-int LTR ERV1 4211 5969 -248 200 33 0 33 chr4 167524308 167524338 -16764324 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 825 278 67 0 chr4 167524445 167524668 -16763994 + MIR SINE MIR 22 259 -3 310 278 22 11 chr4 167524693 167524783 -16763879 + MIR SINE MIR 16 106 -156 1938 158 83 0 chr4 167524887 167525248 -16763414 + LTR29 LTR ERV1 160 550 -72 256 337 35 24 chr4 167525354 167525435 -16763227 - HAL1 LINE L1 -1041 1466 1387 3640 117 51 14 chr4 167525435 167526027 -16762635 + LTR18B LTR ERVL 1 614 0 256 337 35 24 chr4 167526027 167526114 -16762548 - HAL1 LINE L1 -1120 1387 1296 2905 123 18 5 chr4 167526158 167526606 -16762056 + MER4D LTR ERV1 1 454 -418 679 198 31 80 chr4 167526630 167526792 -16761870 + LTR8A LTR ERV1 574 727 0 2062 157 41 34 chr4 167526935 167527195 -16761467 + MER4E LTR ERV1 388 645 -134 1932 76 8 0 chr4 167527195 167527444 -16761218 + AluY SINE Alu 61 311 0 472 42 28 0 chr4 167527447 167527518 -16761144 + (TA)n Simple_repeat Simple_repeat 2 74 0 2062 157 41 34 chr4 167527518 167527641 -16761021 + MER4E LTR ERV1 646 778 -1 1670 243 65 69 chr4 167527646 167528367 -16760295 - MER72 LTR ERV1 -4 718 1 661 327 90 29 chr4 167528367 167528813 -16759849 - HAL1 LINE L1 -1251 1256 784 2299 81 0 40 chr4 167528887 167529210 -16759452 + AluY SINE Alu 1 310 -1 346 303 78 78 chr4 167529358 167529718 -16758944 - HAL1 LINE L1 -2142 365 6 1048 266 122 16 chr4 167530352 167530728 -16757934 - MER70B LTR ERVL -146 432 17 994 153 38 0 chr4 167531477 167531686 -16756976 + L1MA7 LINE L1 6064 6280 -11 22 35 0 0 chr4 167531941 167531970 -16756692 + AT_rich Low_complexity Low_complexity 1 29 0 1544 182 27 27 chr4 167532155 167532452 -16756210 + AluSx SINE Alu 14 310 -2 21 36 0 0 chr4 167533054 167533082 -16755580 + AT_rich Low_complexity Low_complexity 1 28 0 514 275 14 0 chr4 167533261 167533399 -16755263 - MER97c DNA MER1_type? -911 179 40 23 0 0 0 chr4 167533450 167533473 -16755189 + AT_rich Low_complexity Low_complexity 1 23 0 7981 199 141 17 chr4 167533711 167535826 -16752836 + L1M2 LINE L1 3 2379 -4470 1710 282 50 45 chr4 167535941 167536555 -16752107 - L1MCc LINE L1 -5159 1263 303 2003 106 0 61 chr4 167536555 167536866 -16751796 - AluSx SINE Alu -20 292 1 1710 282 50 45 chr4 167536866 167537115 -16751547 - L1MCc LINE L1 -6119 303 57 673 327 68 34 chr4 167537396 167537892 -16750770 + LTR33 LTR ERVL 5 517 -4 628 311 57 18 chr4 167539440 167539668 -16748994 - MIR SINE MIR 0 262 26 1707 205 5 47 chr4 167539858 167540210 -16748452 - MLT1B LTR MaLR 0 390 56 3128 194 37 37 chr4 167540210 167540935 -16747727 - LTR8A LTR ERV1 -2 725 1 1707 205 5 47 chr4 167540935 167540987 -16747675 - MLT1B LTR MaLR -334 56 3 3160 165 100 24 chr4 167540988 167541530 -16747132 - MER50 LTR ERV1 -23 711 109 4637 128 51 6 chr4 167541530 167542320 -16746342 + LTR1B LTR ERV1 2 826 0 3160 165 100 24 chr4 167542320 167542436 -16746226 - MER50 LTR ERV1 -625 109 3 2703 3 0 0 chr4 167542693 167542989 -16745673 + AluYa5 SINE Alu 1 296 -15 3010 141 75 17 chr4 167543742 167544317 -16744345 - MER4B LTR ERV1 -2 608 1 1824 166 0 0 chr4 167544908 167545205 -16743457 + AluSx SINE Alu 5 301 0 296 305 153 30 chr4 167545938 167546233 -16742429 - Charlie7 DNA MER1_type -2218 394 64 186 43 0 0 chr4 167548250 167548273 -16740389 + (TG)n Simple_repeat Simple_repeat 2 24 0 1907 159 0 0 chr4 167548906 167549196 -16739466 + AluJb SINE Alu 5 294 -18 299 285 115 15 chr4 167550439 167550569 -16738093 - MIR SINE MIR 0 262 120 210 263 196 75 chr4 167551293 167551426 -16737236 - L2 LINE L2 -6 3307 3159 192 40 0 0 chr4 167552046 167552071 -16736591 + (CA)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chr4 167553583 167553611 -16735051 + AT_rich Low_complexity Low_complexity 1 28 0 2255 97 0 3 chr4 167554423 167554721 -16733941 + AluSq SINE Alu 2 298 -15 24 0 0 0 chr4 167555642 167555666 -16732996 + AT_rich Low_complexity Low_complexity 1 24 0 222 307 67 13 chr4 167556557 167556632 -16732030 - MIR3 SINE MIR -2 206 128 213 279 0 16 chr4 167556950 167557011 -16731651 + GA-rich Low_complexity Low_complexity 1 60 0 203 179 54 0 chr4 167557328 167557384 -16731278 + (TA)n Simple_repeat Simple_repeat 1 59 0 184 255 0 20 chr4 167557384 167557435 -16731227 - MIR SINE MIR -57 205 156 1357 246 160 20 chr4 167558968 167559513 -16729149 + L1MC4 LINE L1 6461 7081 -961 1608 267 46 16 chr4 167559557 167560123 -16728539 + L1MC4 LINE L1 7317 7899 -143 327 333 28 23 chr4 167560190 167560260 -16728402 - L1MC/D LINE L1 -2346 5462 5394 671 202 0 0 chr4 167560260 167560374 -16728288 + FLAM_A SINE Alu 1 114 -19 327 333 28 23 chr4 167560374 167560480 -16728182 - L1MC/D LINE L1 -2414 5394 5285 198 103 0 0 chr4 167560668 167560697 -16727965 + (T)n Simple_repeat Simple_repeat 1 29 0 1708 47 0 0 chr4 167560701 167560912 -16727750 + L1PA5 LINE L1 5938 6148 -6 577 296 82 62 chr4 167560939 167561810 -16726852 - L1MC/D LINE L1 -1116 5030 4120 1140 244 77 43 chr4 167561810 167562253 -16726409 + LTR40c LTR ERVL 4 461 -4 577 296 82 62 chr4 167562253 167562727 -16725935 - L1MC/D LINE L1 -2026 4120 3657 591 153 0 100 chr4 167563087 167563237 -16725425 + FLAM_C SINE Alu 9 143 0 610 322 106 6 chr4 167563529 167563886 -16724776 + L2 LINE L2 241 633 -2681 2161 117 0 0 chr4 167563888 167564186 -16724476 + AluSq SINE Alu 1 298 -15 287 227 8 50 chr4 167564203 167564322 -16724340 - L1MA4 LINE L1 0 6303 6190 1852 188 34 0 chr4 167564327 167564705 -16723957 - L1MA4A LINE L1 -181 6122 5732 3515 312 123 24 chr4 167564705 167566701 -16721961 + L2 LINE L2 653 2847 -467 2095 260 41 11 chr4 167567068 167567676 -16720986 - MLT1E2 LTR MaLR 0 626 1 437 222 19 132 chr4 167567691 167567948 -16720714 - MLT1E2-int LTR MaLR -14 1721 1238 1450 252 61 45 chr4 167568081 167568589 -16720073 + LTR40a LTR ERVL 4 519 0 463 291 58 41 chr4 167568891 167569063 -16719599 + HERVL40 LTR ERVL 1034 1208 -4322 25 65 0 0 chr4 167569593 167569639 -16719023 + AT_rich Low_complexity Low_complexity 1 46 0 2256 39 7 7 chr4 167570649 167570935 -16717727 + L1PA5 LINE L1 5862 6147 -7 276 324 92 78 chr4 167572705 167573063 -16715599 + L2 LINE L2 2122 2484 -830 215 343 119 49 chr4 167573540 167573683 -16714979 - L3 LINE CR1 -1 1576 1424 1487 169 4 4 chr4 167573818 167574079 -16714583 - L1M2 LINE L1 -693 5607 5347 1210 199 35 57 chr4 167574078 167574445 -16714217 + L1MA7 LINE L1 5923 6281 -10 * 23 0 0 0 chr4 167574480 167574503 -16714159 + AT_rich Low_complexity Low_complexity 1 23 0 1775 90 0 16 chr4 167574569 167574814 -16713848 + AluY SINE Alu 55 295 -16 469 98 12 12 chr4 167574944 167575026 -16713636 + (TCCA)n Simple_repeat Simple_repeat 3 84 0 286 123 35 0 chr4 167575080 167575137 -16713525 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 420 293 96 13 chr4 167575668 167575825 -16712837 + MIR SINE MIR 47 216 -46 23 33 0 0 chr4 167575876 167575906 -16712756 + AT_rich Low_complexity Low_complexity 1 30 0 2251 55 38 10 chr4 167576869 167577159 -16711503 - AluY SINE Alu -13 298 1 775 274 54 9 chr4 167579371 167579594 -16709068 - HERVL40 LTR ERVL -5279 251 19 375 289 13 47 chr4 167579954 167580103 -16708559 - LTR40c LTR ERVL -319 146 3 433 333 7 0 chr4 167580181 167580319 -16708343 + HERVL40 LTR ERVL 1917 2055 -3630 964 217 80 4 chr4 167580355 167580618 -16708044 + Charlie1 DNA MER1_type 2088 2370 -391 462 291 72 60 chr4 167580622 167580697 -16707965 + L1ME2 LINE L1 4481 4554 -1592 1955 164 0 0 chr4 167580697 167580989 -16707673 - AluSx SINE Alu -20 292 1 462 291 72 60 chr4 167580989 167581332 -16707330 + L1ME2 LINE L1 4554 4904 -1242 809 227 35 0 chr4 167581443 167581641 -16707021 + L1ME2 LINE L1 5596 5800 -366 6188 216 94 39 chr4 167581646 167583309 -16705353 + MER52A LTR ERV1 1 1755 0 764 243 51 56 chr4 167583316 167583569 -16705093 + L1ME2 LINE L1 5812 6065 -269 1526 211 53 19 chr4 167583569 167583944 -16704718 + MLT1B LTR MaLR 2 389 -1 764 243 51 56 chr4 167583944 167584045 -16704617 + L1ME2 LINE L1 6065 6333 -1 223 115 58 0 chr4 167584595 167584647 -16704015 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 3073 300 19 30 chr4 167584847 167585757 -16702905 + L1PA15 LINE L1 1 900 -5887 * 4204 238 25 27 chr4 167585729 167587191 -16701471 + L1PA15 LINE L1 1208 2688 -4109 252 0 0 0 chr4 167587191 167587219 -16701443 + (CA)n Simple_repeat Simple_repeat 2 29 0 4204 238 25 27 chr4 167587219 167587235 -16701427 + L1PA15 LINE L1 2688 2703 -4094 2015 190 41 29 chr4 167587236 167587782 -16700880 + MLT2A2 LTR ERVL 1 554 0 553 217 0 0 chr4 167587788 167587917 -16700745 + L1PA15 LINE L1 2706 2834 -3963 1610 81 51 13 chr4 167587917 167588152 -16700510 - MLT2A1 LTR ERVL -194 250 7 3963 58 2 2 chr4 167588168 167588669 -16699993 - HERVL-A1 LTR ERVL -30 5624 5124 * 6702 81 8 0 chr4 167588662 167589538 -16699124 - HERVL LTR ERVL -4641 1013 131 9060 209 30 18 chr4 167589543 167592735 -16695927 + L1PA15 LINE L1 3589 6815 -1 1722 195 0 10 chr4 167593102 167593415 -16695247 - AluJb SINE Alu 0 312 3 5341 118 39 1 chr4 167593691 167594546 -16694116 + L1PA13 LINE L1 5275 6161 -2 34 55 0 0 chr4 167594768 167594823 -16693839 + AT_rich Low_complexity Low_complexity 1 55 0 2139 126 22 33 chr4 167594897 167595261 -16693401 + THE1B LTR MaLR 1 360 -4 10911 103 17 18 chr4 167595265 167596846 -16691816 + THE1B-int LTR MaLR 1 1580 0 2183 117 31 28 chr4 167596846 167597206 -16691456 + THE1B LTR MaLR 1 361 -3 26 93 0 0 chr4 167597228 167597303 -16691359 + AT_rich Low_complexity Low_complexity 1 75 0 21 0 0 0 chr4 167598864 167598885 -16689777 + AT_rich Low_complexity Low_complexity 1 21 0 2209 77 0 11 chr4 167598889 167599226 -16689436 + AluY SINE Alu 1 334 0 2317 174 16 7 chr4 167599236 167599661 -16689001 - MER4D LTR ERV1 0 903 475 2557 237 31 41 chr4 167599693 167600927 -16687735 + L1MCb LINE L1 299 1526 -4851 2133 278 61 13 chr4 167600917 167601769 -16686893 + L1M4 LINE L1 4021 4913 -1233 * 24 67 0 0 chr4 167602305 167602350 -16686312 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr4 167602696 167602718 -16685944 + AT_rich Low_complexity Low_complexity 1 22 0 29 60 0 0 chr4 167603187 167603237 -16685425 + AT_rich Low_complexity Low_complexity 1 50 0 538 329 116 15 chr4 167603421 167603818 -16684844 - L2 LINE L2 -278 3035 2593 3249 269 73 28 chr4 167604754 167607302 -16681360 - L1ME1 LINE L1 -6 6160 3503 588 325 120 62 chr4 167607962 167608158 -16680504 - L2 LINE L2 -898 2416 2233 195 42 0 0 chr4 167608158 167608182 -16680480 + (TCTA)n Simple_repeat Simple_repeat 1 24 0 588 325 120 62 chr4 167608182 167609218 -16679444 - L2 LINE L2 -1081 2233 1112 857 267 148 37 chr4 167611679 167612144 -16676518 + HAL1 LINE L1 1400 1916 -591 330 248 0 52 chr4 167612405 167612558 -16676104 + A-rich Low_complexity Low_complexity 3 147 0 213 65 0 0 chr4 167613146 167613177 -16675485 + (TG)n Simple_repeat Simple_repeat 2 32 0 2463 145 19 101 chr4 167613814 167613995 -16674667 - L1MA5 LINE L1 -2 6298 6104 1934 105 4 4 chr4 167613995 167614262 -16674400 - AluSg SINE Alu -13 297 31 2463 145 19 101 chr4 167614262 167614653 -16674009 - L1MA5 LINE L1 -196 6104 5773 2304 115 0 3 chr4 167614725 167615076 -16673586 + AluSx SINE Alu 1 350 0 23 33 0 0 chr4 167616451 167616481 -16672181 + AT_rich Low_complexity Low_complexity 1 30 0 1536 183 33 13 chr4 167616660 167616960 -16671702 - AluJb SINE Alu -6 306 1 2079 123 3 0 chr4 167618184 167618477 -16670185 + AluSg SINE Alu 1 294 -16 1417 223 3 11 chr4 167619260 167619543 -16669119 - AluJb SINE Alu -31 281 1 355 227 0 0 chr4 167619967 167620033 -16668629 - MER2 DNA MER2_type 0 345 280 * 395 286 0 0 chr4 167620028 167620112 -16668550 - MER2 DNA MER2_type -261 84 1 188 212 15 0 chr4 167620238 167620304 -16668358 + (TG)n Simple_repeat Simple_repeat 2 68 0 23 0 0 0 chr4 167620479 167620502 -16668160 + AT_rich Low_complexity Low_complexity 1 23 0 914 221 5 24 chr4 167620634 167620847 -16667815 + AluJo SINE Alu 5 213 -99 498 302 58 5 chr4 167620947 167621136 -16667526 + L2 LINE L2 3108 3306 -7 917 218 56 0 chr4 167621401 167621598 -16667064 + MER63B DNA MER1_type 1 208 -228 2318 181 53 42 chr4 167621926 167622495 -16666167 + L1MA10 LINE L1 5767 6334 0 30 27 0 0 chr4 167622603 167622640 -16666022 + AT_rich Low_complexity Low_complexity 1 37 0 2139 114 3 0 chr4 167624616 167624905 -16663757 + AluSx SINE Alu 1 290 -22 29885 122 33 49 chr4 167625672 167631453 -16657209 + L1P2 LINE L1 4 5686 -468 492 306 64 23 chr4 167631796 167631828 -16656834 - MIR SINE MIR -16 246 217 1447 219 59 112 chr4 167631828 167631952 -16656710 + MER67A LTR ERV1 2 543 0 1548 237 58 34 chr4 167631952 167632400 -16656262 + MER67A LTR ERV1 85 543 0 492 306 64 23 chr4 167632400 167632586 -16656076 - MIR SINE MIR -45 217 19 592 293 124 9 chr4 167633495 167633887 -16654775 - Charlie2 DNA MER1_type -2310 472 1 239 179 0 71 chr4 167634024 167634108 -16654554 + T-rich Low_complexity Low_complexity 3 80 0 207 0 0 0 chr4 167635409 167635432 -16653230 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1417 210 60 9 chr4 167635871 167636218 -16652444 - MLT1A1 LTR MaLR 0 365 1 733 255 17 21 chr4 167638286 167638521 -16650141 - MER96B DNA MER1_type? -182 235 2 978 254 66 104 chr4 167638746 167639416 -16649246 + MER21B LTR ERV1 54 657 -206 369 0 0 0 chr4 167640265 167640306 -16648356 + (TG)n Simple_repeat Simple_repeat 2 42 0 1343 186 6 90 chr4 167642317 167642650 -16646012 + AluJb SINE Alu 1 305 -7 327 113 0 0 chr4 167644374 167644427 -16644235 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 1267 176 30 75 chr4 167644429 167644724 -16643938 - AluJo SINE Alu -30 282 1 21 0 0 0 chr4 167645754 167645775 -16642887 + AT_rich Low_complexity Low_complexity 1 21 0 192 339 73 37 chr4 167645948 167646057 -16642605 + MIR SINE MIR 20 132 -130 223 276 17 0 chr4 167646900 167646958 -16641704 + L2 LINE L2 3255 3313 0 1755 166 13 7 chr4 167647541 167647849 -16640813 + AluSx SINE Alu 1 310 -2 1427 190 29 48 chr4 167648919 167649135 -16639527 - AluJo SINE Alu 0 359 140 2442 117 19 6 chr4 167649135 167649494 -16639168 - THE1B LTR MaLR 0 364 1 10260 120 16 27 chr4 167649494 167651092 -16637570 - THE1B-int LTR MaLR 0 1580 1 2445 114 19 11 chr4 167651092 167651453 -16637209 - THE1B LTR MaLR 0 364 1 1427 190 29 48 chr4 167651453 167651593 -16637069 - AluJo SINE Alu -216 143 7 213 283 141 0 chr4 167651711 167651810 -16636852 + MIR SINE MIR 97 209 -53 188 296 70 14 chr4 167654241 167654312 -16634350 + MIR SINE MIR 48 122 -140 208 176 20 39 chr4 167654455 167654506 -16634156 + L2 LINE L2 3262 3311 -2 189 147 0 0 chr4 167654547 167654581 -16634081 + (CAT)n Simple_repeat Simple_repeat 2 35 0 29 0 0 0 chr4 167654754 167654783 -16633879 + AT_rich Low_complexity Low_complexity 1 29 0 214 376 64 0 chr4 167656294 167656419 -16632243 + L2 LINE L2 2577 2709 -605 349 329 18 6 chr4 167656478 167656648 -16632014 + MER117 DNA MER1_type 4 175 -22 578 237 91 59 chr4 167656800 167656986 -16631676 + MIR SINE MIR 60 251 -11 2359 200 16 4 chr4 167657069 167657585 -16631077 - L1MC2 LINE L1 -11 6333 5812 1183 195 29 26 chr4 167657654 167657926 -16630736 - L1PA16 LINE L1 -1 6165 5893 313 198 18 0 chr4 167657970 167658081 -16630581 + (TA)n Simple_repeat Simple_repeat 2 114 0 32 26 0 0 chr4 167658153 167658192 -16630470 + AT_rich Low_complexity Low_complexity 1 39 0 471 303 53 111 chr4 167658262 167658678 -16629984 + L2 LINE L2 2905 3296 -17 22 0 0 0 chr4 167658962 167658984 -16629678 + AT_rich Low_complexity Low_complexity 1 22 0 566 290 61 67 chr4 167659870 167660282 -16628380 - LTR16A1 LTR ERVL -50 400 1 2324 141 79 9 chr4 167660566 167660985 -16627677 + MER83 LTR ERV1 1 448 0 647 334 60 55 chr4 167661390 167662353 -16626309 - ERVL LTR ERVL -1066 4698 3639 * 964 348 59 56 chr4 167662336 167662678 -16625984 - ERVL LTR ERVL -2069 3695 3355 2247 89 0 26 chr4 167662678 167662982 -16625680 - AluSg SINE Alu -14 296 1 964 348 59 56 chr4 167662982 167663812 -16624850 - ERVL LTR ERVL -2409 3355 2520 674 331 85 13 chr4 167663935 167664240 -16624422 + L3 LINE CR1 1249 1575 -2 237 211 115 0 chr4 167664287 167664339 -16624323 - L2 LINE L2 -1 3271 3214 915 209 63 100 chr4 167664712 167664967 -16623695 - MSTD LTR MaLR 0 396 160 1981 148 35 3 chr4 167664967 167665311 -16623351 - L1PA16 LINE L1 -1 6165 5811 915 209 63 100 chr4 167665311 167665466 -16623196 - MSTD LTR MaLR -236 160 1 21 57 0 0 chr4 167665668 167665703 -16622959 + AT_rich Low_complexity Low_complexity 1 35 0 228 184 0 0 chr4 167665920 167665969 -16622693 + (TA)n Simple_repeat Simple_repeat 2 50 0 351 281 35 18 chr4 167665969 167666083 -16622579 + L1MC4 LINE L1 6588 6703 -1339 22 56 0 0 chr4 167666111 167666147 -16622515 + AT_rich Low_complexity Low_complexity 1 36 0 24411 82 14 9 chr4 167666404 167670661 -16618001 - L1PA7 LINE L1 -12 6142 1869 358 306 17 53 chr4 167670887 167671094 -16617568 + MIR SINE MIR 44 241 -21 271 328 90 34 chr4 167671859 167672036 -16616626 - MIR SINE MIR -74 188 2 1318 283 179 31 chr4 167673201 167674160 -16614502 + L2 LINE L2 1940 3039 -274 1749 180 102 26 chr4 167674189 167674572 -16614090 - Tigger2a DNA MER2_type 0 434 23 217 294 130 33 chr4 167674717 167674809 -16613853 + L2 LINE L2 3208 3308 -5 614 273 27 69 chr4 167675573 167675761 -16612901 + MIR SINE MIR 3 179 -83 2281 105 0 10 chr4 167675761 167676065 -16612597 + AluSq SINE Alu 1 301 -12 614 273 27 69 chr4 167676065 167676136 -16612526 + MIR SINE MIR 179 251 -11 197 286 0 0 chr4 167676104 167676153 -16612509 + L2 LINE L2 3265 3313 0 * 28 29 0 0 chr4 167676616 167676651 -16612011 + AT_rich Low_complexity Low_complexity 1 35 0 664 242 154 84 chr4 167677432 167677919 -16610743 + MLT1G1 LTR MaLR 5 565 -30 180 302 21 21 chr4 167678006 167678102 -16610560 + L2 LINE L2 3156 3251 -62 309 79 66 13 chr4 167678249 167678325 -16610337 + (TA)n Simple_repeat Simple_repeat 1 80 0 22 0 0 0 chr4 167678525 167678547 -16610115 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr4 167679215 167679250 -16609412 + AT_rich Low_complexity Low_complexity 1 35 0 282 275 11 22 chr4 167679407 167679498 -16609164 + GA-rich Low_complexity Low_complexity 2 91 0 27 96 0 0 chr4 167683742 167683825 -16604837 + AT_rich Low_complexity Low_complexity 1 83 0 29 47 0 0 chr4 167684709 167684752 -16603910 + AT_rich Low_complexity Low_complexity 1 43 0 36 23 0 0 chr4 167684959 167685002 -16603660 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr4 167686482 167686505 -16602157 + AT_rich Low_complexity Low_complexity 1 23 0 27 49 0 0 chr4 167688012 167688053 -16600609 + AT_rich Low_complexity Low_complexity 1 41 0 1460 196 3 21 chr4 167688134 167688420 -16600242 - AluJo SINE Alu -31 281 1 316 352 82 13 chr4 167688524 167688683 -16599979 + MIR SINE MIR 21 190 -72 243 0 0 0 chr4 167688720 167688747 -16599915 + (TA)n Simple_repeat Simple_repeat 2 28 0 25 65 0 0 chr4 167688984 167689030 -16599632 + AT_rich Low_complexity Low_complexity 1 46 0 334 311 93 6 chr4 167689449 167689610 -16599052 + MIR SINE MIR 63 237 -25 306 125 0 0 chr4 167690636 167690684 -16597978 + (TA)n Simple_repeat Simple_repeat 2 49 0 303 28 0 0 chr4 167691157 167691193 -16597469 + (TA)n Simple_repeat Simple_repeat 1 36 0 821 298 19 8 chr4 167691377 167691635 -16597027 + MIR SINE MIR 2 262 0 379 367 50 35 chr4 167693174 167693596 -16595066 + L2 LINE L2 1264 1691 -1623 2663 123 40 49 chr4 167694057 167694528 -16594134 - LTR24 LTR ERV1 0 467 1 180 0 0 0 chr4 167694763 167694783 -16593879 + (CTTAT)n Simple_repeat Simple_repeat 3 22 0 3867 163 46 10 chr4 167694888 167695605 -16593057 + Tigger2 DNA MER2_type 2 744 -1974 1715 161 0 48 chr4 167695694 167696010 -16592652 - AluSx SINE Alu -7 305 5 1235 177 62 0 chr4 167696014 167696240 -16592422 + Tigger2 DNA MER2_type 2479 2718 0 182 384 57 16 chr4 167696251 167696496 -16592166 + L2 LINE L2 2522 2776 -538 593 232 18 149 chr4 167696861 167697144 -16591518 + MLT1D LTR MaLR 3 248 -219 1033 254 26 7 chr4 167697154 167697426 -16591236 + MLT1C LTR MaLR 191 467 0 21 57 0 0 chr4 167699249 167699284 -16589378 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 167699325 167699346 -16589316 + AT_rich Low_complexity Low_complexity 1 21 0 294 106 0 0 chr4 167699546 167699593 -16589069 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 22 35 0 0 chr4 167699675 167699704 -16588958 + AT_rich Low_complexity Low_complexity 1 29 0 36 23 0 0 chr4 167700331 167700374 -16588288 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr4 167700891 167700912 -16587750 + AT_rich Low_complexity Low_complexity 1 21 0 197 304 152 0 chr4 167701331 167701410 -16587252 - MIR3 SINE MIR -43 165 75 204 243 0 0 chr4 167702370 167702444 -16586218 + (TG)n Simple_repeat Simple_repeat 1 74 0 25 0 0 0 chr4 167702972 167702997 -16585665 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr4 167703282 167703305 -16585357 + AT_rich Low_complexity Low_complexity 1 23 0 30 0 0 0 chr4 167703468 167703498 -16585164 + AT_rich Low_complexity Low_complexity 1 30 0 569 279 31 5 chr4 167703875 167704085 -16584577 + L1MC4 LINE L1 6443 6662 -1333 * 1648 246 109 5 chr4 167704079 167704645 -16584017 + L1MC4 LINE L1 7292 7916 -126 35 24 0 0 chr4 167704645 167704687 -16583975 + AT_rich Low_complexity Low_complexity 1 42 0 266 130 65 0 chr4 167704694 167704802 -16583860 + (TA)n Simple_repeat Simple_repeat 2 116 0 1952 126 3 0 chr4 167705188 167705502 -16583160 - AluSq SINE Alu 0 315 1 222 276 17 0 chr4 167706629 167706687 -16581975 + (CA)n Simple_repeat Simple_repeat 2 60 0 1070 303 39 30 chr4 167707397 167707862 -16580800 + Zaphod DNA AcHobo 30 498 -3533 637 205 53 90 chr4 167708262 167708618 -16580044 + Zaphod DNA AcHobo 2076 2418 -1613 * 1760 234 128 12 chr4 167708613 167709349 -16579313 + Zaphod DNA AcHobo 3211 4031 0 2643 145 19 5 chr4 167709509 167709929 -16578733 - MSTB LTR MaLR 0 426 1 266 389 19 19 chr4 167712569 167712726 -16575936 + MLT1I LTR MaLR 62 218 -191 * 483 315 80 33 chr4 167712705 167712918 -16575744 + MLT1J2 LTR MaLR 207 429 -21 22 0 0 0 chr4 167713170 167713192 -16575470 + AT_rich Low_complexity Low_complexity 1 22 0 219 228 0 0 chr4 167713771 167713863 -16574799 + (TA)n Simple_repeat Simple_repeat 1 92 0 427 210 11 0 chr4 167713918 167714094 -16574568 + (TA)n Simple_repeat Simple_repeat 2 179 0 470 213 21 0 chr4 167714127 167714221 -16574441 - MER82 DNA MER2_type -557 96 1 2405 155 74 24 chr4 167714223 167714680 -16573982 - Tigger1 DNA MER2_type 0 2418 1939 23 33 0 0 chr4 167715200 167715230 -16573432 + AT_rich Low_complexity Low_complexity 1 30 0 1684 163 28 82 chr4 167715381 167715787 -16572875 - MLT1B LTR MaLR -4 538 2 6884 140 28 23 chr4 167716114 167717008 -16571654 - Tigger1 DNA MER2_type -930 1488 585 663 140 9 0 chr4 167717008 167717122 -16571540 - L1PB4 LINE L1 0 6156 6042 6884 140 28 23 chr4 167717122 167717431 -16571231 - Tigger1 DNA MER2_type -1833 585 279 25 0 0 0 chr4 167717717 167717742 -16570920 + AT_rich Low_complexity Low_complexity 1 25 0 4846 157 35 22 chr4 167717754 167718045 -16570617 - MER49 LTR ERV1 0 923 637 1824 121 4 25 chr4 167718045 167718325 -16570337 - AluSx SINE Alu -13 299 26 4846 157 35 22 chr4 167718325 167718944 -16569718 - MER49 LTR ERV1 -286 637 1 2320 44 3 57 chr4 167720661 167720977 -16567685 - AluY SINE Alu -12 299 1 256 195 24 35 chr4 167721203 167721372 -16567290 + T-rich Low_complexity Low_complexity 2 168 0 2413 87 0 3 chr4 167721414 167721726 -16566936 - AluSx SINE Alu -1 311 1 1597 211 55 6 chr4 167722377 167722723 -16565939 - MLT1A1 LTR MaLR -2 363 1 475 236 81 0 chr4 167722736 167722859 -16565803 + LTR16A1 LTR ERVL 277 409 -48 4461 156 25 2 chr4 167722863 167723656 -16565006 - L1MC2 LINE L1 -111 6233 5423 493 271 64 48 chr4 167724012 167724200 -16564462 - MIR SINE MIR -6 256 66 211 311 8 15 chr4 167724219 167724351 -16564311 + (TA)n Simple_repeat Simple_repeat 1 131 0 2089 120 0 3 chr4 167724473 167724780 -16563882 + AluSx SINE Alu 1 306 0 1641 205 3 0 chr4 167725223 167725525 -16563137 + AluJb SINE Alu 1 303 -9 987 149 72 28 chr4 167726217 167726398 -16562264 - THE1B LTR MaLR 0 364 176 983 216 123 33 chr4 167726674 167727007 -16561655 - MLT1A1 LTR MaLR -2 363 1 1792 144 31 3 chr4 167729008 167729300 -16559362 - AluJb SINE Alu -12 300 1 26 0 0 0 chr4 167729616 167729642 -16559020 + AT_rich Low_complexity Low_complexity 1 26 0 3998 144 19 4 chr4 167730260 167730952 -16557710 - L1MA4 LINE L1 -2 6298 5597 21 0 0 0 chr4 167732245 167732266 -16556396 + AT_rich Low_complexity Low_complexity 1 21 0 1991 112 52 0 chr4 167732277 167732564 -16556098 - AluSx SINE Alu -10 302 1 474 270 78 111 chr4 167736239 167736367 -16552295 - MLT1K LTR MaLR -30 558 427 3437 157 17 11 chr4 167736367 167737006 -16551656 + L1MB1 LINE L1 5519 6161 -7 474 270 78 111 chr4 167737006 167737236 -16551426 - MLT1K LTR MaLR -161 427 212 475 291 121 24 chr4 167737244 167737409 -16551253 - MER5A DNA MER1_type -7 182 2 4604 36 51 3 chr4 167737655 167738241 -16550421 + L1PA4 LINE L1 5542 6155 0 232 270 0 0 chr4 167738353 167738416 -16550246 + L1M4 LINE L1 3760 3822 -2324 24 53 0 0 chr4 167739751 167739789 -16548873 + AT_rich Low_complexity Low_complexity 1 38 0 257 51 26 0 chr4 167739918 167739957 -16548705 + (TG)n Simple_repeat Simple_repeat 2 41 0 243 240 0 0 chr4 167740130 167740180 -16548482 - MLT1K LTR MaLR -525 68 19 185 385 10 39 chr4 167740227 167740331 -16548331 - L2 LINE L2 -195 3077 2977 180 344 62 0 chr4 167740597 167740661 -16548001 - L2 LINE L2 -682 2632 2565 27 62 0 0 chr4 167741185 167741233 -16547429 + AT_rich Low_complexity Low_complexity 1 48 0 364 285 89 46 chr4 167741806 167742191 -16546471 - L1MC/D LINE L1 -692 5550 5155 742 271 46 56 chr4 167742496 167742906 -16545756 + L1ME1 LINE L1 5756 6161 -5 35 78 0 0 chr4 167743103 167743180 -16545482 + AT_rich Low_complexity Low_complexity 1 77 0 21 0 0 0 chr4 167743312 167743333 -16545329 + AT_rich Low_complexity Low_complexity 1 21 0 1996 121 0 36 chr4 167744333 167744639 -16544023 - AluY SINE Alu -8 303 9 25 31 0 0 chr4 167744716 167744748 -16543914 + AT_rich Low_complexity Low_complexity 1 32 0 33 56 0 0 chr4 167745887 167745941 -16542721 + AT_rich Low_complexity Low_complexity 1 54 0 42348 35 22 2 chr4 167747160 167753225 -16535437 + L1PA3 LINE L1 2 6190 0 21 36 0 0 chr4 167754023 167754051 -16534611 + AT_rich Low_complexity Low_complexity 1 28 0 1306 234 43 58 chr4 167754691 167755160 -16533502 - L1MC/D LINE L1 -1001 5145 4684 317 239 142 9 chr4 167755163 167755276 -16533386 - L2 LINE L2 0 3313 3186 292 323 32 13 chr4 167756697 167756852 -16531810 - MIR SINE MIR -48 214 57 1664 235 56 89 chr4 167757717 167758343 -16530319 - MER77 LTR ERV1 0 605 1 266 333 72 7 chr4 167758463 167758601 -16530061 - MIR SINE MIR -111 151 5 231 333 46 35 chr4 167759435 167759609 -16529053 - L1MEc LINE L1 -6166 230 55 272 289 67 67 chr4 167760175 167760369 -16528293 - MIR SINE MIR -21 241 48 2073 107 3 17 chr4 167762016 167762314 -16526348 - AluSq SINE Alu -17 296 3 1506 113 5 0 chr4 167763201 167763413 -16525249 + AluSp SINE Alu 83 295 -18 27 62 0 0 chr4 167764518 167764566 -16524096 + AT_rich Low_complexity Low_complexity 1 48 0 367 283 81 92 chr4 167764749 167764831 -16523831 + L1 LINE L1 4201 4282 -1864 1515 193 28 30 chr4 167764831 167765193 -16523469 - MLT1A1 LTR MaLR 0 365 5 367 283 81 92 chr4 167765193 167765619 -16523043 + L1 LINE L1 4282 4703 -1443 389 315 106 82 chr4 167765625 167766184 -16522478 + L2 LINE L2 2390 2961 -353 1865 145 7 14 chr4 167766244 167766533 -16522129 - AluJo SINE Alu -15 297 11 2151 100 7 3 chr4 167766934 167767235 -16521427 - AluSx SINE Alu -10 302 1 1936 118 104 27 chr4 167767901 167768239 -16520423 + THE1B LTR MaLR 1 364 0 481 356 61 9 chr4 167768408 167768638 -16520024 + MLT1J LTR MaLR 74 315 -196 1654 223 99 2 chr4 167768820 167769246 -16519416 + MLT1C LTR MaLR 1 467 0 1200 193 114 20 chr4 167769385 167769691 -16518971 - MER44D DNA MER2_type 0 609 5 1806 152 50 0 chr4 167770731 167771028 -16517634 - AluSx SINE Alu 0 312 1 200 57 0 29 chr4 167771523 167771558 -16517104 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2630 177 9 40 chr4 167771838 167772413 -16516249 - LTR60 LTR ERV1 -29 557 1 462 283 75 0 chr4 167774722 167774842 -16513820 + MER94 DNA DNA 6 134 0 2190 155 59 10 chr4 167775239 167775646 -16513016 + MSTA LTR MaLR 1 427 -1 278 309 79 18 chr4 167775694 167775859 -16512803 - MIR SINE MIR -15 247 73 21 71 0 0 chr4 167776475 167776517 -16512145 + AT_rich Low_complexity Low_complexity 1 42 0 676 130 0 0 chr4 167777864 167777964 -16510698 + MSTA LTR MaLR 1 100 -328 * 1570 65 44 18 chr4 167777957 167778186 -16510476 - MLT2A1 LTR ERVL -209 235 1 943 235 184 63 chr4 167778895 167779389 -16509273 - MLT2B3 LTR ERVL 0 554 1 2080 124 3 13 chr4 167779608 167779923 -16508739 + AluSx SINE Alu 1 312 0 872 153 51 0 chr4 167783397 167783573 -16505089 - MER53 DNA DNA -2 187 3 2129 134 49 0 chr4 167783580 167783924 -16504738 + MER46B DNA MER2_type 1 236 0 1434 191 24 24 chr4 167784227 167784515 -16504147 - AluJo SINE Alu -24 288 1 283 336 88 0 chr4 167784580 167784693 -16503969 + L2 LINE L2 3145 3267 -5 193 290 107 61 chr4 167784707 167784838 -16503824 - MIR SINE MIR -95 167 31 262 260 78 0 chr4 167784960 167785037 -16503625 - MIR SINE MIR -70 192 110 24 0 0 0 chr4 167785327 167785351 -16503311 + AT_rich Low_complexity Low_complexity 1 24 0 426 164 0 21 chr4 167786217 167786315 -16502347 - AluJ/FLAM SINE Alu -226 76 1 1367 279 125 45 chr4 167786798 167787826 -16500836 + L1ME LINE L1 197 1299 -4916 248 304 30 82 chr4 167787828 167788098 -16500564 + L1ME LINE L1 1775 2030 -4366 1624 218 53 6 chr4 167788098 167788438 -16500224 - MLT1A1 LTR MaLR 0 365 10 257 298 42 38 chr4 167788447 167788709 -16499953 + L1ME LINE L1 2026 2288 -4108 798 251 40 40 chr4 167788842 167789193 -16499469 + L1M4 LINE L1 4851 5201 -945 533 108 0 0 chr4 167789194 167789277 -16499385 + AluSg1 SINE Alu 1 83 -226 511 310 107 58 chr4 167789811 167790326 -16498336 + L2 LINE L2 2774 3312 -1 295 314 34 8 chr4 167790469 167790587 -16498075 - MIR SINE MIR -38 224 104 1907 148 29 23 chr4 167790866 167791210 -16497452 + MER7A DNA MER2_type 2 345 -1 1647 163 0 21 chr4 167791341 167791624 -16497038 - AluJb SINE Alu -25 287 11 344 241 15 120 chr4 167791690 167791823 -16496839 + L1 LINE L1 5 123 -7045 337 318 88 95 chr4 167791840 167792409 -16496253 + L1 LINE L1 906 1470 -5698 658 299 0 5 chr4 167792499 167792693 -16495969 + L1 LINE L1 1737 1929 -5239 * 1064 181 0 104 chr4 167792684 167792815 -16495847 + L1 LINE L1 4972 5064 -2103 2096 107 3 3 chr4 167792815 167793105 -16495557 + AluSx SINE Alu 1 290 -22 1064 181 0 104 chr4 167793105 167793232 -16495430 + L1 LINE L1 5064 5203 -1964 886 204 0 0 chr4 167793456 167793608 -16495054 - FRAM SINE Alu -24 152 1 197 337 45 11 chr4 167795220 167795309 -16493353 - MIR3 SINE MIR -21 187 96 479 250 10 0 chr4 167795404 167795508 -16493154 + MER5A DNA MER1_type 6 110 -79 24 32 0 0 chr4 167796166 167796197 -16492465 + AT_rich Low_complexity Low_complexity 1 31 0 1714 173 0 30 chr4 167796889 167797189 -16491473 - AluJb SINE Alu -21 291 1 1113 180 5 14 chr4 167797947 167798158 -16490504 - AluJo SINE Alu -17 295 87 26 30 0 0 chr4 167801924 167801957 -16486705 + AT_rich Low_complexity Low_complexity 1 33 0 28 29 0 0 chr4 167802189 167802224 -16486438 + AT_rich Low_complexity Low_complexity 1 35 0 274 320 40 0 chr4 167802488 167802563 -16486099 + MIR SINE MIR 75 152 -56 1863 136 21 7 chr4 167803013 167803344 -16485318 + AluSx SINE Alu 1 335 0 26 0 0 0 chr4 167803462 167803488 -16485174 + AT_rich Low_complexity Low_complexity 1 26 0 745 121 0 0 chr4 167804582 167804698 -16483964 + AluSq/x SINE Alu 1 116 -196 326 23 23 0 chr4 167804699 167804742 -16483920 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 199 307 0 79 chr4 167806932 167807033 -16481629 + MIR3 SINE MIR 115 207 -1 32 0 0 0 chr4 167807375 167807407 -16481255 + AT_rich Low_complexity Low_complexity 1 32 0 216 320 198 23 chr4 167809026 167809529 -16479133 - L2 LINE L2 -101 3212 2617 309 68 0 0 chr4 167811432 167811476 -16477186 + (CA)n Simple_repeat Simple_repeat 2 45 0 376 279 39 56 chr4 167811861 167812094 -16476568 + L1MEd LINE L1 1010 1238 -5292 384 339 94 30 chr4 167812402 167812741 -16475921 + L1MEd LINE L1 1648 2008 -4713 2306 88 3 0 chr4 167812943 167813248 -16475414 - AluSg SINE Alu -4 306 1 343 275 49 26 chr4 167813418 167813772 -16474890 + L1MEd LINE L1 2448 2803 -3737 22 35 0 0 chr4 167813979 167814008 -16474654 + AT_rich Low_complexity Low_complexity 1 29 0 278 261 133 46 chr4 167814293 167814534 -16474128 + L1MEd LINE L1 3347 3608 -2932 364 295 115 28 chr4 167814886 167815243 -16473419 + L1MEd LINE L1 4075 4462 -2078 241 160 20 0 chr4 167815632 167815682 -16472980 + L1MEd LINE L1 4957 5007 -1533 360 0 0 0 chr4 167815696 167815736 -16472926 + (TG)n Simple_repeat Simple_repeat 2 41 0 383 321 146 23 chr4 167815742 167816085 -16472577 + L1MEd LINE L1 5057 5441 -1099 351 304 74 0 chr4 167816607 167816742 -16471920 + MER112 DNA MER1_type 116 260 0 1953 148 127 16 chr4 167817145 167817530 -16471132 + MSTA LTR MaLR 1 428 0 300 248 12 87 chr4 167817772 167817883 -16470779 + L1MCa LINE L1 1943 2040 -4386 1569 188 29 32 chr4 167817883 167818224 -16470438 + MER2 DNA MER2_type 1 340 -4 300 248 12 87 chr4 167818224 167818273 -16470389 + L1MCa LINE L1 2040 2091 -4335 1473 184 3 38 chr4 167818483 167818776 -16469886 - AluJo SINE Alu -29 283 1 237 170 19 19 chr4 167818827 167818880 -16469782 - L1ME LINE L1 -433 5688 5636 356 400 19 0 chr4 167819179 167819334 -16469328 + L2 LINE L2 2881 3038 -275 350 329 34 55 chr4 167819382 167819619 -16469043 + L2 LINE L2 2825 3056 -216 622 213 16 0 chr4 167822041 167822168 -16466494 + FLAM_A SINE Alu 1 129 -4 1996 147 0 10 chr4 167822739 167823051 -16465611 - AluSx SINE Alu -3 309 1 29 47 0 0 chr4 167823092 167823135 -16465527 + AT_rich Low_complexity Low_complexity 1 43 0 198 0 0 0 chr4 167823160 167823182 -16465480 + (A)n Simple_repeat Simple_repeat 1 22 0 950 138 6 13 chr4 167823381 167823540 -16465122 + MER41B LTR ERV1 478 635 0 353 203 27 0 chr4 167823540 167823614 -16465048 + MER41B-int LTR ERV1 1 76 -5870 6989 115 26 8 chr4 167823634 167824700 -16463962 + MER41B-int LTR ERV1 4861 5946 0 3572 104 23 8 chr4 167824700 167825231 -16463431 + MER41B LTR ERV1 1 539 -96 2032 134 3 7 chr4 167825231 167825537 -16463125 - AluSc SINE Alu -4 305 1 1531 237 81 34 chr4 167826279 167826773 -16461889 + LTR40a LTR ERVL 1 517 -2 574 344 56 7 chr4 167827174 167827552 -16461110 + LTR16A LTR ERVL 2 450 0 186 307 149 18 chr4 167827559 167827673 -16460989 + L2 LINE L2 3184 3312 -1 2437 78 0 0 chr4 167827846 167828153 -16460509 + AluY SINE Alu 1 307 -4 23 0 0 0 chr4 167829362 167829385 -16459277 + AT_rich Low_complexity Low_complexity 1 23 0 1530 247 51 11 chr4 167830669 167831118 -16457544 - MLT1C LTR MaLR 0 467 1 2172 96 0 0 chr4 167831326 167831606 -16457056 - AluSg SINE Alu -30 280 1 2024 142 3 7 chr4 167832240 167832542 -16456120 - AluSx SINE Alu -11 301 1 236 230 35 106 chr4 167834241 167834331 -16454331 - MLT1H LTR MaLR -15 534 452 294 87 0 0 chr4 167834331 167834377 -16454285 + (TG)n Simple_repeat Simple_repeat 1 46 0 236 230 35 106 chr4 167834377 167834399 -16454263 - MLT1H LTR MaLR -97 452 430 1634 241 49 9 chr4 167835733 167836182 -16452480 - MLT1C LTR MaLR 0 467 1 1092 157 10 25 chr4 167836462 167836660 -16452002 - AluSg/x SINE Alu -1 311 117 278 330 150 20 chr4 167837587 167837787 -16450875 - MIR SINE MIR -33 229 4 2128 123 0 0 chr4 167838402 167838694 -16449968 - AluSq SINE Alu -21 292 1 2133 132 68 14 chr4 167839804 167840174 -16448488 - MLT1B LTR MaLR 0 390 1 270 100 200 33 chr4 167840402 167840462 -16448200 + MADE1 DNA Mariner 1 70 -10 253 118 98 0 chr4 167840493 167840544 -16448118 + MADE1 DNA Mariner 25 80 0 320 287 53 0 chr4 167840970 167841064 -16447598 - MLT1J1 LTR MaLR -347 99 1 314 312 9 28 chr4 167841487 167841596 -16447066 + MIR SINE MIR 53 159 -103 368 315 109 64 chr4 167842986 167843316 -16445346 + HAL1 LINE L1 1378 1722 -785 3460 128 99 5 chr4 167843480 167844087 -16444575 - MER4A LTR ERV1 0 664 1 32 67 0 0 chr4 167844334 167844394 -16444268 + AT_rich Low_complexity Low_complexity 1 60 0 2242 67 0 3 chr4 167844759 167845069 -16443593 - AluY SINE Alu 0 309 1 478 166 149 46 chr4 167845247 167845422 -16443240 + MER4C LTR ERV1 1 193 -272 * 484 278 20 71 chr4 167845392 167845647 -16443015 + LTR59 LTR ERV1 345 586 -11 763 203 0 14 chr4 167845936 167846127 -16442535 - AluJb SINE Alu 0 325 137 311 101 14 87 chr4 167846127 167846196 -16442466 + MER45C DNA AcHobo 98 161 -792 424 309 206 0 chr4 167846403 167846655 -16442007 + MER45C DNA AcHobo 328 631 -322 2785 168 95 16 chr4 167846678 167847244 -16441418 - LTR36 LTR ERV1 0 611 1 633 103 0 0 chr4 167847342 167847429 -16441233 + AluY SINE Alu 1 87 -224 227 200 0 0 chr4 167847439 167847489 -16441173 + A-rich Low_complexity Low_complexity 1 50 0 281 278 102 28 chr4 167847489 167847597 -16441065 + LTR16C LTR ERVL 232 347 -144 1776 167 55 35 chr4 167847615 167847963 -16440699 - THE1B LTR MaLR 0 364 10 25 0 0 0 chr4 167848204 167848229 -16440433 + AT_rich Low_complexity Low_complexity 1 25 0 2069 88 0 0 chr4 167848267 167848529 -16440133 + AluSg SINE Alu 39 300 -10 2021 89 250 6 chr4 167848577 167848937 -16439725 - LTR7 LTR ERV1 -2 448 1 2322 103 48 13 chr4 167848937 167849316 -16439346 - HERVH LTR ERV1 0 7713 7322 1346 142 18 0 chr4 167849314 167849533 -16439129 - HERVH LTR ERV1 -1894 5819 5597 * 4497 123 0 3 chr4 167849534 167850194 -16438468 - HERVH LTR ERV1 -2567 5146 4489 3253 114 6 4 chr4 167850197 167850690 -16437972 - HERVH LTR ERV1 -3720 3993 3500 826 155 20 0 chr4 167850689 167850837 -16437825 - HERVH LTR ERV1 -4423 3290 3140 * 5894 109 1 13 chr4 167850831 167851729 -16436933 - HERVH LTR ERV1 -4726 2987 2101 214 159 0 45 chr4 167852479 167852523 -16436139 + GA-rich Low_complexity Low_complexity 3 44 0 536 269 111 12 chr4 167852661 167852832 -16435830 - MIR SINE MIR -70 192 5 287 300 0 0 chr4 167854574 167854654 -16434008 - MIR SINE MIR -74 188 109 800 242 18 18 chr4 167855877 167856100 -16432562 - L1ME1 LINE L1 -5 6161 5939 2471 178 43 4 chr4 167856120 167856632 -16432030 - L1MA5 LINE L1 0 6300 5769 6149 119 7 17 chr4 167856645 167857608 -16431054 - L1MA3 LINE L1 0 6305 5352 * 7177 159 44 17 chr4 167857603 167860275 -16428387 - L1PBb LINE L1 -2962 3900 1153 8381 195 17 8 chr4 167860377 167862417 -16426245 - L1PBa LINE L1 -5219 1644 1 450 165 64 18 chr4 167862418 167862527 -16426135 - L1MA3 LINE L1 -926 5379 5266 * 6931 203 20 7 chr4 167862521 167864067 -16424595 + L1M4 LINE L1 2188 3754 -2392 21 57 0 0 chr4 167864299 167864334 -16424328 + AT_rich Low_complexity Low_complexity 1 35 0 451 352 61 17 chr4 167864597 167864976 -16423686 + L1M4 LINE L1 4107 4514 -1632 253 256 92 88 chr4 167865041 167865268 -16423394 + L1M4 LINE L1 4557 4784 -1362 264 67 0 0 chr4 167865425 167865470 -16423192 + LTR66 LTR ERVL 394 438 -172 215 318 87 8 chr4 167866986 167867112 -16421550 + L3 LINE CR1 1249 1384 -193 243 88 0 0 chr4 167867492 167867526 -16421136 + (TA)n Simple_repeat Simple_repeat 1 34 0 1117 128 16 5 chr4 167868187 167868375 -16420287 + L1PB2 LINE L1 5960 6149 -2 23 78 0 0 chr4 167868753 167868804 -16419858 + AT_rich Low_complexity Low_complexity 1 51 0 26 0 0 0 chr4 167869404 167869430 -16419232 + AT_rich Low_complexity Low_complexity 1 26 0 208 191 21 0 chr4 167870271 167870318 -16418344 + (TTA)n Simple_repeat Simple_repeat 3 50 0 1289 120 69 5 chr4 167870329 167870545 -16418117 + MER30 DNA MER1_type 1 230 0 1601 152 165 13 chr4 167871163 167871478 -16417184 - MER47A DNA MER2_type -3 363 1 483 190 36 88 chr4 167872014 167872151 -16416511 - MLT2C1 LTR ERVL -3 394 265 * 1278 206 65 10 chr4 167872108 167872399 -16416263 - MLT1B LTR MaLR -82 308 2 413 281 59 7 chr4 167874134 167874269 -16414393 - LTR16C LTR ERVL -163 328 187 227 274 16 0 chr4 167874536 167874598 -16414064 - MLT1J1 LTR MaLR -117 329 267 234 286 0 13 chr4 167874838 167874915 -16413747 + (TAG)n Simple_repeat Simple_repeat 1 76 0 226 236 154 18 chr4 167875118 167875228 -16413434 - MLT1K LTR MaLR -88 500 376 1529 225 22 14 chr4 167875979 167876334 -16412328 + MLT1A1 LTR MaLR 1 358 -7 1721 170 0 7 chr4 167878906 167879226 -16409436 - AluJb SINE Alu 0 320 3 246 188 0 0 chr4 167879388 167879436 -16409226 - LTR66 LTR ERVL -170 440 393 1609 189 23 3 chr4 167880147 167880453 -16408209 + AluJb SINE Alu 1 312 0 4655 191 192 2 chr4 167881606 167882744 -16405918 + L1 LINE L1 3898 5252 -894 182 360 121 49 chr4 167882884 167883454 -16405208 + L2 LINE L2 694 1304 -2010 21 0 0 0 chr4 167883805 167883826 -16404836 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 167884267 167884288 -16404374 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 167884536 167884558 -16404104 + AT_rich Low_complexity Low_complexity 1 22 0 217 213 0 25 chr4 167885341 167885421 -16403241 + CT-rich Low_complexity Low_complexity 4 81 0 270 56 0 0 chr4 167886336 167886372 -16402290 + (TG)n Simple_repeat Simple_repeat 2 37 0 30 0 0 0 chr4 167886553 167886583 -16402079 + AT_rich Low_complexity Low_complexity 1 30 0 1362 199 108 13 chr4 167886992 167887379 -16401283 + Charlie5 DNA MER1_type 1 424 -2188 5359 163 84 6 chr4 167887403 167887418 -16401244 + Tigger1 DNA MER2_type 7 19 -2399 1564 160 9 52 chr4 167887418 167887743 -16400919 - AluJb SINE Alu -1 311 1 5359 163 84 6 chr4 167887743 167888702 -16399960 + Tigger1 DNA MER2_type 19 1057 -1361 1350 241 94 0 chr4 167888709 167889133 -16399529 + Charlie5 DNA MER1_type 525 988 -1624 * 2321 216 217 5 chr4 167889123 167889986 -16398676 + Charlie5 DNA MER1_type 1559 2604 -8 204 270 159 18 chr4 167890498 167890661 -16398001 - MIR SINE MIR -2 260 75 2095 122 3 0 chr4 167890976 167891270 -16397392 + AluSx SINE Alu 1 295 -17 242 233 35 12 chr4 167891286 167891372 -16397290 + (TA)n Simple_repeat Simple_repeat 1 88 0 24 0 0 0 chr4 167891384 167891408 -16397254 + AT_rich Low_complexity Low_complexity 1 24 0 242 94 0 0 chr4 167891686 167891718 -16396944 + U2 snRNA snRNA 3 34 -154 216 0 0 0 chr4 167893718 167893742 -16394920 + (GA)n Simple_repeat Simple_repeat 1 24 0 857 238 97 4 chr4 167894118 167894345 -16394317 + MER58 DNA MER1_type 37 284 -57 498 33 0 0 chr4 167894939 167894999 -16393663 + (TG)n Simple_repeat Simple_repeat 2 61 0 323 276 217 32 chr4 167897061 167897282 -16391380 - MIR SINE MIR 0 262 1 195 334 173 42 chr4 167897875 167898210 -16390452 + L2 LINE L2 1255 1633 -1681 2152 114 3 3 chr4 167898385 167898684 -16389978 + AluSx SINE Alu 3 301 -11 2479 205 28 6 chr4 167898977 167899475 -16389187 + Tigger6a DNA MER2_type 7 515 -568 515 309 47 22 chr4 167899476 167899796 -16388866 - L1ME LINE L1 -5241 829 502 327 320 166 0 chr4 167901129 167901310 -16387352 - MIR SINE MIR 0 262 52 22 56 0 0 chr4 167901948 167901984 -16386678 + AT_rich Low_complexity Low_complexity 1 36 0 705 278 42 68 chr4 167902302 167902769 -16385893 + MLT1H1 LTR MaLR 1 555 -35 215 305 128 30 chr4 167902773 167902937 -16385725 + MIR SINE MIR 65 244 -18 * 609 312 57 16 chr4 167902934 167903181 -16385481 + L2 LINE L2 2228 2484 -830 243 0 0 0 chr4 167903412 167903439 -16385223 + (A)n Simple_repeat Simple_repeat 1 27 0 201 358 67 34 chr4 167903504 167903683 -16384979 + L2 LINE L2 2787 2971 -343 186 356 14 0 chr4 167904646 167904719 -16383943 + MIR3 SINE MIR 121 194 -14 299 51 0 0 chr4 167904839 167904878 -16383784 + MADE1 DNA Mariner 1 39 -41 25 31 0 0 chr4 167905921 167905953 -16382709 + AT_rich Low_complexity Low_complexity 1 32 0 183 80 0 0 chr4 167906311 167906336 -16382326 + (A)n Simple_repeat Simple_repeat 1 25 0 2719 208 18 52 chr4 167906344 167906856 -16381806 - L1MA4 LINE L1 -238 6062 5604 992 48 0 0 chr4 167906856 167906981 -16381681 - L1PA6 LINE L1 -4 6150 6026 2719 208 18 52 chr4 167906981 167907455 -16381207 - L1MA4 LINE L1 -696 5604 5116 37 39 0 0 chr4 167908372 167908423 -16380239 + AT_rich Low_complexity Low_complexity 1 51 0 399 212 172 0 chr4 167908554 167908653 -16380009 + L2 LINE L2 3197 3312 -1 261 0 0 0 chr4 167909255 167909284 -16379378 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr4 167909748 167909769 -16378893 + AT_rich Low_complexity Low_complexity 1 21 0 2269 118 0 0 chr4 167910226 167910539 -16378123 + AluSq SINE Alu 1 313 0 3645 138 166 7 chr4 167910685 167911361 -16377301 - LTR39 LTR ERV1 0 783 1 416 326 79 9 chr4 167911361 167911574 -16377088 - LTR16C LTR ERVL -40 451 224 4228 145 90 12 chr4 167911613 167912379 -16376283 - LTR1B LTR ERV1 0 826 1 354 185 54 92 chr4 167912578 167912708 -16375954 + MER5C DNA MER1_type 200 324 0 201 227 0 0 chr4 167913353 167913397 -16375265 + (CA)n Simple_repeat Simple_repeat 1 44 0 212 297 27 0 chr4 167914241 167914315 -16374347 + (TG)n Simple_repeat Simple_repeat 1 76 0 24 32 0 0 chr4 167914394 167914425 -16374237 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr4 167914686 167914715 -16373947 + AT_rich Low_complexity Low_complexity 1 29 0 1528 202 65 51 chr4 167914899 167915250 -16373412 - MLT1A1 LTR MaLR 0 365 10 398 325 44 23 chr4 167916731 167917115 -16371547 - L1ME4a LINE L1 -195 5926 5535 33 25 0 0 chr4 167917199 167917239 -16371423 + AT_rich Low_complexity Low_complexity 1 40 0 1345 196 16 59 chr4 167917567 167917889 -16370773 + AluJb SINE Alu 1 308 -4 261 0 0 0 chr4 167917889 167917918 -16370744 + (TA)n Simple_repeat Simple_repeat 1 29 0 593 160 53 77 chr4 167918204 167918273 -16370389 - FRAM SINE Alu -143 169 100 360 0 0 0 chr4 167918273 167918313 -16370349 + (TTTTG)n Simple_repeat Simple_repeat 4 43 0 593 160 53 77 chr4 167918313 167918412 -16370250 - FRAM SINE Alu -212 100 5 324 262 0 0 chr4 167920429 167920532 -16368130 + (TA)n Simple_repeat Simple_repeat 2 104 0 224 279 0 16 chr4 167921349 167921410 -16367252 + CT-rich Low_complexity Low_complexity 1 60 0 21 57 0 0 chr4 167921421 167921456 -16367206 + AT_rich Low_complexity Low_complexity 1 35 0 307 300 72 50 chr4 167922000 167922106 -16366556 - MIR SINE MIR -9 253 140 2056 120 7 23 chr4 167922106 167922414 -16366248 - AluSq SINE Alu -10 303 1 307 300 72 50 chr4 167922414 167922487 -16366175 - MIR SINE MIR -122 140 70 244 393 27 7 chr4 167923858 167924008 -16364654 - L3 LINE CR1 -354 1223 1071 2108 153 3 9 chr4 167925261 167925600 -16363062 - MER1B DNA MER1_type 0 337 1 2857 139 10 26 chr4 167925723 167925828 -16362834 - L1MC1 LINE L1 -5 6328 6223 1798 140 70 17 chr4 167925828 167926184 -16362478 - THE1C LTR MaLR 0 375 1 2857 139 10 26 chr4 167926184 167926583 -16362079 - L1MC1 LINE L1 -110 6223 5832 410 394 46 38 chr4 167926911 167927302 -16361360 + L2 LINE L2 1242 1635 -1679 504 302 104 74 chr4 167927405 167927799 -16360863 + L2 LINE L2 2074 2479 -835 245 181 57 9 chr4 167929511 167929616 -16359046 + (TA)n Simple_repeat Simple_repeat 1 110 0 426 129 92 0 chr4 167929629 167929792 -16358870 + (TA)n Simple_repeat Simple_repeat 2 179 0 340 317 95 33 chr4 167929921 167930164 -16358498 - L2 LINE L2 0 3313 3056 1119 234 81 50 chr4 167930275 167930659 -16358003 + MSTD LTR MaLR 1 396 0 22 35 0 0 chr4 167930853 167930882 -16357780 + AT_rich Low_complexity Low_complexity 1 29 0 186 43 0 0 chr4 167931502 167931525 -16357137 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2019 188 87 7 chr4 167931589 167932035 -16356627 - MER89 LTR ERV1 -23 536 55 1068 316 135 47 chr4 167932245 167933326 -16355336 + L2 LINE L2 2129 3312 -1 228 310 152 35 chr4 167933850 167933995 -16354667 + MIR SINE MIR 19 180 -82 243 299 10 52 chr4 167934602 167934699 -16353963 - L2 LINE L2 -42 3230 3138 2317 46 0 3 chr4 167935302 167935608 -16353054 - AluY SINE Alu 0 305 1 258 116 0 0 chr4 167935720 167935763 -16352899 + (GA)n Simple_repeat Simple_repeat 1 43 0 1563 147 236 11 chr4 167936804 167937152 -16351510 + MSTA LTR MaLR 3 428 0 3452 191 35 46 chr4 167937154 167938290 -16350372 + MSTD-int LTR MaLR 2 980 -600 1260 173 200 14 chr4 167938290 167938585 -16350077 + MSTA LTR MaLR 79 428 0 216 346 0 0 chr4 167939102 167939206 -16349456 + (TA)n Simple_repeat Simple_repeat 2 105 0 254 304 95 19 chr4 167939393 167939656 -16349006 - L1ME LINE L1 -303 5818 5536 185 94 31 0 chr4 167940245 167940277 -16348385 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 1231 226 73 11 chr4 167940280 167940555 -16348107 - AluJo SINE Alu -20 292 1 227 247 22 11 chr4 167940671 167940760 -16347902 + (TA)n Simple_repeat Simple_repeat 2 91 0 45 34 0 0 chr4 167940909 167940968 -16347694 + AT_rich Low_complexity Low_complexity 1 59 0 604 318 125 49 chr4 167941513 167941612 -16347050 - L2 LINE L2 -692 2622 2532 1828 141 33 20 chr4 167941612 167941917 -16346745 - AluSx SINE Alu -3 309 1 604 318 125 49 chr4 167941917 167942626 -16346036 - L2 LINE L2 -782 2532 1753 1124 312 88 58 chr4 167942728 167943635 -16345027 + L2 LINE L2 2368 3304 -9 221 319 60 60 chr4 167943775 167944073 -16344589 - L2 LINE L2 -1258 2056 1759 772 110 25 0 chr4 167945156 167945274 -16343388 + AluJb SINE Alu 4 124 -188 51 75 0 0 chr4 167945411 167945518 -16343144 + AT_rich Low_complexity Low_complexity 1 107 0 262 171 89 57 chr4 167946392 167946515 -16342147 - HAL1 LINE L1 -123 2384 2258 430 212 112 97 chr4 167946785 167946910 -16341752 + L1MC4a LINE L1 5674 5796 -2012 2458 54 0 6 chr4 167946910 167947223 -16341439 + AluY SINE Alu 1 311 0 430 212 112 97 chr4 167947223 167947375 -16341287 + L1MC4a LINE L1 5796 5955 -1853 25 31 0 0 chr4 167947863 167947895 -16340767 + AT_rich Low_complexity Low_complexity 1 32 0 2717 173 50 15 chr4 167948073 167948610 -16340052 - LTR48B LTR ERV1 -35 609 54 7669 201 71 64 chr4 167948646 167949446 -16339216 - LTR48B-int LTR ERV1 0 6331 5538 6715 67 16 2 chr4 167949446 167950829 -16337833 - L1PA7 LINE L1 0 6154 4766 7669 201 71 64 chr4 167950829 167952611 -16336051 - LTR48B-int LTR ERV1 -793 5538 3771 2287 94 3 3 chr4 167952611 167952920 -16335742 - AluSc SINE Alu 0 309 1 7669 201 71 64 chr4 167952920 167953246 -16335416 - LTR48B-int LTR ERV1 -2560 3771 3449 2574 130 43 110 chr4 167953246 167953809 -16334853 + MER1A DNA MER1_type 3 527 0 7669 201 71 64 chr4 167953809 167953883 -16334779 - LTR48B-int LTR ERV1 -2882 3449 2536 267 111 95 63 chr4 167953995 167954058 -16334604 - LTR48B-int LTR ERV1 -2378 2493 2429 347 291 46 82 chr4 167954653 167954849 -16333813 - HAL1 LINE L1 -725 1782 1594 508 278 181 41 chr4 167954920 167955437 -16333225 - LTR50 LTR ERVL -102 693 22 40 37 0 0 chr4 167955613 167955667 -16332995 + AT_rich Low_complexity Low_complexity 1 54 0 496 269 64 124 chr4 167955672 167955832 -16332830 - HAL1 LINE L1 -1198 1309 1141 276 30 0 0 chr4 167955832 167955865 -16332797 + (TG)n Simple_repeat Simple_repeat 2 34 0 1573 174 36 14 chr4 167955869 167956145 -16332517 - AluJo SINE Alu -30 282 1 496 269 64 124 chr4 167956145 167956511 -16332151 - HAL1 LINE L1 -1369 1138 810 267 152 0 0 chr4 167957266 167957312 -16331350 + CT-rich Low_complexity Low_complexity 1 46 0 522 259 59 41 chr4 167957339 167957559 -16331103 + MLT1J LTR MaLR 287 510 -1 242 200 12 25 chr4 167957906 167957986 -16330676 + (TA)n Simple_repeat Simple_repeat 2 80 0 297 314 86 29 chr4 167958295 167958435 -16330227 - L2 LINE L2 -540 2774 2627 484 207 0 41 chr4 167958475 167958596 -16330066 + MER20 DNA MER1_type 1 116 -103 1403 108 33 0 chr4 167959045 167959258 -16329404 - HSMAR2 DNA Mariner -1 1301 1082 256 352 93 0 chr4 167959261 167959369 -16329293 - L2 LINE L2 -292 3021 2904 316 240 154 0 chr4 167960055 167960159 -16328503 + L2 LINE L2 3194 3313 0 26 0 0 0 chr4 167960249 167960275 -16328387 + AT_rich Low_complexity Low_complexity 1 26 0 366 251 117 49 chr4 167960332 167960495 -16328167 - MIR SINE MIR 0 262 89 246 208 0 28 chr4 167961448 167961520 -16327142 + (TTTAA)n Simple_repeat Simple_repeat 1 70 0 26 0 0 0 chr4 167961651 167961677 -16326985 + AT_rich Low_complexity Low_complexity 1 26 0 2360 227 63 46 chr4 167962344 167963014 -16325648 - MER76 LTR ERV 0 688 8 21 57 0 0 chr4 167963188 167963223 -16325439 + AT_rich Low_complexity Low_complexity 1 35 0 2282 71 7 3 chr4 167963681 167963991 -16324671 - AluY SINE Alu 0 311 1 344 328 61 37 chr4 167964904 167965451 -16323211 + L1MEd LINE L1 891 1543 -947 2332 87 3 0 chr4 167966609 167966921 -16321741 - AluSp SINE Alu 0 313 1 3095 25 6 0 chr4 167967222 167967585 -16321077 + L1PA4 LINE L1 5790 6154 -1 803 229 112 80 chr4 167968036 167968437 -16320225 - MLT2D LTR ERVL 0 414 1 2111 109 30 3 chr4 167968487 167968791 -16319871 + AluSx SINE Alu 1 312 0 22 35 0 0 chr4 167971150 167971179 -16317483 + AT_rich Low_complexity Low_complexity 1 29 0 4935 149 37 8 chr4 167971503 167972396 -16316266 - L1MC1 LINE L1 -11 6322 5404 1441 258 14 11 chr4 167972406 167972770 -16315892 + MLT1A1 LTR MaLR 1 365 0 364 346 116 59 chr4 167975328 167976181 -16312481 + L3 LINE CR1 41 942 -635 512 184 10 0 chr4 167976220 167976318 -16312344 - AluJ/FLAM SINE Alu -213 99 1 392 174 9 96 chr4 167977106 167977221 -16311441 - MIR SINE MIR 0 262 158 774 232 66 76 chr4 167977391 167977814 -16310848 + L1ME2 LINE L1 5733 6151 -13 300 196 216 0 chr4 167977881 167977978 -16310684 + L1MC5 LINE L1 7795 7912 -49 2182 128 0 6 chr4 167978166 167978522 -16310140 + AluSx SINE Alu 1 354 0 719 246 73 0 chr4 167979341 167979520 -16309142 - MER58A DNA MER1_type 0 224 33 260 246 0 16 chr4 167979570 167979631 -16309031 - MER5A DNA MER1_type -72 117 58 231 372 39 28 chr4 167979614 167979794 -16308868 + MIR SINE MIR 56 237 -25 * 1516 231 175 0 chr4 167979957 167980385 -16308277 - MLT1D LTR MaLR -2 503 1 2626 133 35 0 chr4 167980743 167981006 -16307656 - MER65A LTR ERV1 0 445 160 351 0 0 0 chr4 167981006 167981045 -16307617 + (TG)n Simple_repeat Simple_repeat 2 40 0 2626 133 35 0 chr4 167981045 167981209 -16307453 - MER65A LTR ERV1 -285 160 3 4555 226 43 17 chr4 167981213 167982307 -16306355 - MER65A-int LTR ERV1 0 4871 3750 295 221 29 0 chr4 167982546 167982614 -16306048 - LTR60 LTR ERV1 -516 70 1 621 264 14 0 chr4 167982616 167982760 -16305902 - MER65A-int LTR ERV1 -1120 3751 3606 261 212 0 76 chr4 167982848 167982914 -16305748 - MER65-int LTR ERV1 -1616 5589 5529 * 2256 196 104 91 chr4 167982910 167983249 -16305413 - MER65-int LTR ERV1 -1246 5085 4752 2381 84 3 0 chr4 167983249 167983547 -16305115 - AluSc SINE Alu -10 299 1 2256 196 104 91 chr4 167983547 167984545 -16304117 - MER65-int LTR ERV1 -1579 4752 2477 825 152 12 115 chr4 167984624 167984867 -16303795 - MER65-int LTR ERV1 -2868 3730 3513 1234 206 8 38 chr4 167985165 167985690 -16302972 - MER65-int LTR ERV1 -2564 2559 1720 619 197 39 35 chr4 167985700 167985903 -16302759 - MER65-int LTR ERV1 -6371 1749 1546 379 122 0 54 chr4 167986013 167986087 -16302575 - MER65-int LTR ERV1 -2377 2494 2425 5243 222 19 15 chr4 167986098 167987232 -16301430 + L1M2 LINE L1 10 1147 -5702 6001 199 47 52 chr4 167987236 167987570 -16301092 - MER65-int LTR ERV1 -2486 2385 2051 1983 134 3 7 chr4 167987570 167987868 -16300794 + AluSx SINE Alu 3 299 -13 6001 199 47 52 chr4 167987868 167989222 -16299440 - MER65-int LTR ERV1 -2820 2051 706 779 218 32 19 chr4 167989243 167989459 -16299203 - MER65-int LTR ERV1 -4275 596 378 1669 171 18 36 chr4 167989673 167990007 -16298655 - MER65A LTR ERV1 -3 442 115 29 0 0 0 chr4 167990559 167990588 -16298074 + AT_rich Low_complexity Low_complexity 1 29 0 288 189 11 32 chr4 167991153 167991248 -16297414 - L1MC4 LINE L1 -1337 6705 6613 2367 55 3 7 chr4 167993850 167994143 -16294519 + AluY SINE Alu 1 292 -19 400 243 9 54 chr4 167994555 167994666 -16293996 - MLT1J2 LTR MaLR -294 156 51 26 93 0 0 chr4 167994797 167994872 -16293790 + AT_rich Low_complexity Low_complexity 1 75 0 270 81 0 0 chr4 167995060 167995097 -16293565 + (GA)n Simple_repeat Simple_repeat 1 37 0 202 315 11 45 chr4 167996076 167996165 -16292497 + MIR3 SINE MIR 114 199 -9 38 51 0 0 chr4 167996280 167996339 -16292323 + AT_rich Low_complexity Low_complexity 1 59 0 288 0 0 0 chr4 167998135 167998167 -16290495 + (TA)n Simple_repeat Simple_repeat 1 32 0 2400 48 0 7 chr4 167998305 167998598 -16290064 - AluY SINE Alu 0 311 21 350 333 108 10 chr4 167998828 167999023 -16289639 - L2 LINE L2 -339 2975 2762 780 289 54 4 chr4 168000216 168000455 -16288207 - MIR SINE MIR -5 257 7 185 305 86 29 chr4 168001056 168001161 -16287501 - L2 LINE L2 -43 3270 3160 327 25 0 0 chr4 168001662 168001702 -16286960 + (CA)n Simple_repeat Simple_repeat 2 41 0 22 88 0 0 chr4 168001894 168001951 -16286711 + AT_rich Low_complexity Low_complexity 1 57 0 273 57 0 0 chr4 168002786 168002821 -16285841 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 256 309 170 0 chr4 168002827 168002921 -16285741 - L2 LINE L2 -4 3309 3200 36 77 0 0 chr4 168003105 168003183 -16285479 + AT_rich Low_complexity Low_complexity 1 78 0 182 380 13 0 chr4 168004148 168004227 -16284435 + MIR SINE MIR 48 127 -135 198 381 85 17 chr4 168004304 168004480 -16284182 - MIR3 SINE MIR -1 207 20 1481 170 42 11 chr4 168004756 168004915 -16283747 - AluJb SINE Alu -21 291 138 240 35 0 0 chr4 168004915 168004944 -16283718 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2124 71 0 4 chr4 168004944 168005212 -16283450 - AluY SINE Alu -27 284 18 1481 170 42 11 chr4 168005212 168005316 -16283346 - AluJb SINE Alu -173 139 19 904 253 69 25 chr4 168005526 168006025 -16282637 - MER34 LTR ERV1 0 542 1 331 221 236 16 chr4 168006451 168006578 -16282084 + L2 LINE L2 3154 3308 -5 28 29 0 0 chr4 168010033 168010068 -16278594 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr4 168010595 168010619 -16278043 + AT_rich Low_complexity Low_complexity 1 24 0 443 208 195 45 chr4 168011454 168011608 -16277054 - MER5A DNA MER1_type 0 189 13 206 148 19 0 chr4 168011656 168011710 -16276952 + (TA)n Simple_repeat Simple_repeat 2 56 0 459 0 0 0 chr4 168011728 168011779 -16276883 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 1927 129 0 11 chr4 168011780 168012067 -16276595 - AluSx SINE Alu -26 286 3 1554 199 0 3 chr4 168012397 168012699 -16275963 - AluJb SINE Alu -11 301 1 2142 92 4 0 chr4 168014009 168014321 -16274341 - AluSp SINE Alu 0 313 1 1254 237 25 33 chr4 168014661 168014791 -16273871 + MLT1A1 LTR MaLR 2 132 -233 2226 98 0 0 chr4 168014791 168015087 -16273575 - AluSx SINE Alu -16 296 1 1254 237 25 33 chr4 168015087 168015323 -16273339 + MLT1A1 LTR MaLR 132 365 0 2143 122 67 8 chr4 168015774 168016150 -16272512 - MER48 LTR ERV1 0 398 1 423 30 15 30 chr4 168016313 168016380 -16272282 + (TA)n Simple_repeat Simple_repeat 2 67 0 497 344 42 5 chr4 168018864 168019053 -16269609 - MER91A DNA MER1_type 0 196 1 701 316 161 16 chr4 168019253 168019928 -16268734 - L2 LINE L2 -212 3060 2288 183 204 0 0 chr4 168019928 168019972 -16268690 + (TG)n Simple_repeat Simple_repeat 1 44 0 213 190 17 17 chr4 168020490 168020548 -16268114 + (TA)n Simple_repeat Simple_repeat 2 59 0 366 61 0 0 chr4 168020703 168020752 -16267910 + (CA)n Simple_repeat Simple_repeat 2 50 0 282 343 29 7 chr4 168020774 168020914 -16267748 - L2 LINE L2 -1636 1678 1536 404 288 17 76 chr4 168020957 168021193 -16267469 - L1MC4 LINE L1 -1 8041 7820 182 316 51 31 chr4 168021317 168021415 -16267247 - L2 LINE L2 -1901 1413 1314 24 0 0 0 chr4 168022826 168022850 -16265812 + AT_rich Low_complexity Low_complexity 1 24 0 252 292 4 146 chr4 168024812 168025045 -16263617 - MIR SINE MIR -14 248 49 2052 86 46 7 chr4 168025830 168026110 -16262552 + AluSg SINE Alu 3 293 -17 368 295 74 8 chr4 168026598 168026720 -16261942 + MIR3 SINE MIR 13 142 -66 443 291 88 20 chr4 168026741 168026889 -16261773 + MER5B DNA MER1_type 2 159 -19 2791 10 0 3 chr4 168027328 168027641 -16261021 + AluYb8 SINE Alu 1 312 -6 730 133 0 0 chr4 168027917 168028055 -16260607 - AluSc SINE Alu 0 314 177 653 184 30 8 chr4 168028130 168028372 -16260290 + (ATGGTG)n Simple_repeat Simple_repeat 1 247 0 396 340 95 14 chr4 168028749 168029043 -16259619 + L3 LINE CR1 1255 1572 -5 483 318 62 6 chr4 168029548 168029727 -16258935 - MIR SINE MIR -54 208 20 1833 111 54 90 chr4 168029811 168030160 -16258502 + THE1C LTR MaLR 1 336 -39 1774 151 7 20 chr4 168030160 168030465 -16258197 - AluSx SINE Alu -11 301 1 1833 111 54 90 chr4 168030465 168030504 -16258158 + THE1C LTR MaLR 336 375 0 1444 173 52 38 chr4 168031198 168031487 -16257175 + AluJb SINE Alu 1 293 -19 1559 171 72 79 chr4 168031668 168031837 -16256825 + MLT1B LTR MaLR 3 172 -218 2133 125 3 0 chr4 168031837 168032148 -16256514 - AluSx SINE Alu 0 312 1 1559 171 72 79 chr4 168032148 168032369 -16256293 + MLT1B LTR MaLR 172 390 0 233 347 0 0 chr4 168032894 168032966 -16255696 - L2 LINE L2 -262 3051 2980 669 313 106 64 chr4 168033447 168033996 -16254666 - L2 LINE L2 -343 2971 2400 1887 138 40 0 chr4 168034731 168035007 -16253655 - AluSx SINE Alu -15 297 11 248 219 0 0 chr4 168035007 168035048 -16253614 - AluJ/monomer SINE Alu -258 41 1 2462 43 7 3 chr4 168035709 168036008 -16252654 + AluY SINE Alu 1 300 -11 1491 206 3 0 chr4 168036179 168036461 -16252201 + AluJo SINE Alu 21 303 -9 239 211 0 0 chr4 168037378 168037430 -16251232 + L1MC4 LINE L1 6652 6703 -1339 * 259 322 0 0 chr4 168037400 168037490 -16251172 - L1MC4 LINE L1 -1339 6703 6614 414 295 188 19 chr4 168037703 168037910 -16250752 + MIR SINE MIR 6 247 -15 2528 81 53 0 chr4 168037946 168038305 -16250357 - L1PA7 LINE L1 -8 6146 5769 * 7844 12 0 0 chr4 168038304 168039464 -16249198 - L1PA2 LINE L1 0 6155 4995 5919 81 1 9 chr4 168039462 168040741 -16247921 - L1PA7 LINE L1 -368 5786 4521 * 6041 84 29 17 chr4 168040739 168041363 -16247299 + L1P LINE L1 3612 4252 -1894 2320 73 3 7 chr4 168041363 168041665 -16246997 - AluY SINE Alu -10 301 1 6041 84 29 17 chr4 168041665 168041925 -16246737 + L1P LINE L1 4252 4507 -1639 42 20 0 0 chr4 168042137 168042186 -16246476 + AT_rich Low_complexity Low_complexity 1 49 0 30 0 0 0 chr4 168042386 168042416 -16246246 + AT_rich Low_complexity Low_complexity 1 30 0 1229 253 65 63 chr4 168043354 168043443 -16245219 + LTR40a LTR ERVL 1 88 -431 2423 71 3 0 chr4 168043443 168043738 -16244924 - AluSc SINE Alu -13 296 1 1229 253 65 63 chr4 168043738 168044142 -16244520 + LTR40a LTR ERVL 88 495 -24 1286 184 189 35 chr4 168044336 168044679 -16243983 - MSTD LTR MaLR 0 396 1 3250 218 59 23 chr4 168045791 168046586 -16242076 + L1MB5 LINE L1 5343 6166 -8 22 0 0 0 chr4 168047058 168047080 -16241582 + AT_rich Low_complexity Low_complexity 1 22 0 405 324 14 7 chr4 168048044 168048183 -16240479 - L2 LINE L2 0 3272 3133 270 81 0 0 chr4 168049457 168049494 -16239168 + (TAA)n Simple_repeat Simple_repeat 2 38 0 187 356 122 9 chr4 168049920 168050035 -16238627 - L2 LINE L2 0 3272 3145 185 350 10 41 chr4 168050482 168050579 -16238083 + L2 LINE L2 1861 1954 -1360 232 356 144 28 chr4 168050724 168051188 -16237474 + L2 LINE L2 2315 2832 -482 227 302 42 21 chr4 168051514 168051610 -16237052 + L2 LINE L2 3175 3272 0 29 60 0 0 chr4 168051631 168051681 -16236981 + AT_rich Low_complexity Low_complexity 1 50 0 22623 187 27 46 chr4 168052025 168053118 -16235544 + L1PA8A LINE L1 4 1116 -5015 210 37 0 0 chr4 168053118 168053145 -16235517 + (CAA)n Simple_repeat Simple_repeat 1 27 0 22623 187 27 46 chr4 168053145 168053226 -16235436 + L1PA8A LINE L1 1116 1197 -4934 2378 66 7 3 chr4 168053226 168053529 -16235133 + AluY SINE Alu 1 304 -7 22623 187 27 46 chr4 168053529 168057473 -16231189 + L1PA8A LINE L1 1197 5005 -1126 2278 86 7 7 chr4 168057473 168057774 -16230888 + AluY SINE Alu 1 301 -10 22623 187 27 46 chr4 168057774 168058211 -16230451 + L1PA8A LINE L1 5005 5449 -682 228 256 25 99 chr4 168058253 168058374 -16230288 + MER94 DNA DNA 10 121 -13 379 303 142 60 chr4 168058549 168058830 -16229832 + L2 LINE L2 2968 3271 -1 285 248 96 51 chr4 168058848 168059005 -16229657 + MIR SINE MIR 99 262 0 207 100 0 0 chr4 168059402 168059432 -16229230 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 214 325 12 12 chr4 168059600 168059680 -16228982 - MIR3 SINE MIR -31 177 98 2061 114 3 3 chr4 168060820 168061148 -16227514 - AluSc SINE Alu 0 330 3 25 51 0 0 chr4 168063074 168063113 -16225549 + AT_rich Low_complexity Low_complexity 1 39 0 2200 108 3 13 chr4 168063383 168063690 -16224972 - AluSp SINE Alu -9 304 1 388 208 0 0 chr4 168064223 168064295 -16224367 - MER94 DNA DNA -62 72 1 1076 224 108 12 chr4 168064320 168064664 -16223998 - Charlie4a DNA MER1_type -37 471 95 243 243 0 27 chr4 168065663 168065737 -16222925 + (TATG)n Simple_repeat Simple_repeat 1 72 0 576 311 55 69 chr4 168066162 168066450 -16222212 - L2 LINE L2 -167 3146 2874 2327 75 20 0 chr4 168066450 168066755 -16221907 - AluY SINE Alu 0 311 1 576 311 55 69 chr4 168066755 168067059 -16221603 - L2 LINE L2 -439 2874 2567 588 290 77 32 chr4 168067258 168067506 -16221156 + MIR SINE MIR 4 262 0 219 338 38 0 chr4 168068335 168068415 -16220247 + L3 LINE CR1 987 1069 -508 199 270 175 0 chr4 168068508 168068571 -16220091 + L3 LINE CR1 1247 1320 -257 9981 199 45 60 chr4 168069808 168071277 -16217385 - L1MC2 LINE L1 -11 8173 6684 1535 234 31 0 chr4 168071277 168071631 -16217031 - MLT1A1 LTR MaLR 0 365 1 9981 199 45 60 chr4 168071631 168071811 -16216851 - L1MC2 LINE L1 -1500 6684 6503 1999 130 10 0 chr4 168071811 168072103 -16216559 - AluSg SINE Alu -15 295 1 9981 199 45 60 chr4 168072103 168072307 -16216355 - L1MC2 LINE L1 -1681 6503 6298 2355 84 0 10 chr4 168072307 168072615 -16216047 - AluSp SINE Alu -8 305 1 9981 199 45 60 chr4 168072615 168074001 -16214661 - L1MC2 LINE L1 -1886 6298 5008 2597 267 86 27 chr4 168074007 168074148 -16214514 - L1MC2 LINE L1 -2875 3689 3558 2231 117 3 0 chr4 168074148 168074457 -16214205 - AluSg SINE Alu 0 310 1 2597 267 86 27 chr4 168074457 168076321 -16212341 - L1MC2 LINE L1 -3006 3558 1597 4531 121 47 41 chr4 168076327 168077102 -16211560 - MER4E LTR ERV1 0 779 1 2700 267 78 32 chr4 168077103 168078322 -16210340 - L1MC2 LINE L1 -4848 1197 41 216 0 0 0 chr4 168078844 168078868 -16209794 + (TA)n Simple_repeat Simple_repeat 1 24 0 527 256 32 19 chr4 168079791 168079947 -16208715 + L2 LINE L2 3154 3311 -2 233 280 220 0 chr4 168079954 168080054 -16208608 + L2 LINE L2 3185 3306 -7 245 226 57 28 chr4 168082584 168082690 -16205972 + Charlie8 DNA MER1_type 61 169 -2248 256 288 27 27 chr4 168083323 168083396 -16205266 + MIR SINE MIR 32 104 -158 501 273 58 0 chr4 168085104 168085243 -16203419 - MER5A DNA MER1_type -1 188 42 869 174 0 7 chr4 168085243 168085443 -16203219 + AluSg/x SINE Alu 137 335 0 267 125 0 0 chr4 168085445 168085485 -16203177 - MER5A DNA MER1_type -128 61 22 776 293 99 40 chr4 168085670 168086192 -16202470 - HAL1 LINE L1 -1 2506 2016 435 63 0 0 chr4 168086192 168086255 -16202407 + (TG)n Simple_repeat Simple_repeat 2 64 0 776 293 99 40 chr4 168086255 168086934 -16201728 - HAL1 LINE L1 -491 2016 588 308 323 71 81 chr4 168087060 168087258 -16201404 - HAL1 LINE L1 -2060 447 252 23 33 0 0 chr4 168087548 168087578 -16201084 + AT_rich Low_complexity Low_complexity 1 30 0 555 305 113 17 chr4 168088632 168088871 -16199791 + MIR SINE MIR 1 262 0 251 208 0 0 chr4 168089176 168089224 -16199438 - L2 LINE L2 0 3313 3266 2041 72 26 0 chr4 168089974 168090238 -16198424 + AluY SINE Alu 35 305 -6 339 240 136 45 chr4 168090976 168091130 -16197532 - MIR SINE MIR -48 214 47 217 283 152 11 chr4 168091395 168091487 -16197175 - L3 LINE CR1 -666 911 807 778 270 145 24 chr4 168091907 168092499 -16196163 - L1ME3A LINE L1 -195 5975 5312 1235 168 99 23 chr4 168092721 168093018 -16195644 + AluJo SINE Alu 1 317 0 466 284 89 82 chr4 168093020 168094842 -16193820 - L1ME3A LINE L1 -1109 5037 3229 2012 138 3 0 chr4 168094842 168095139 -16193523 - AluSx SINE Alu -12 300 3 466 284 89 82 chr4 168095139 168095276 -16193386 - L1ME3A LINE L1 -2917 3229 3073 1942 170 8 39 chr4 168095276 168095658 -16193004 - L1PA16 LINE L1 -9 6157 5788 466 284 89 82 chr4 168095658 168095763 -16192899 - L1ME3A LINE L1 -3073 3073 2970 2140 77 35 3 chr4 168095922 168096208 -16192454 + AluY SINE Alu 2 296 -15 192 77 0 0 chr4 168096345 168096371 -16192291 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 3809 149 15 0 chr4 168096375 168096985 -16191677 - L1PA15 LINE L1 -28 7575 6957 10244 209 13 10 chr4 168097120 168099400 -16189262 - L1PA15 LINE L1 -883 6701 4414 419 254 27 0 chr4 168099400 168099510 -16189152 - L1PA15 LINE L1 -3422 4162 4050 * 3768 220 28 29 chr4 168099506 168099858 -16188804 - L1PA15 LINE L1 -4302 3282 2931 2105 93 0 28 chr4 168099858 168100170 -16188492 - AluY SINE Alu 0 306 3 3768 220 28 29 chr4 168100170 168100893 -16187769 - L1PA15 LINE L1 -4653 2931 2179 335 338 141 24 chr4 168101426 168101796 -16186866 - L3 LINE CR1 -754 823 411 239 91 0 23 chr4 168101951 168101995 -16186667 + (TG)n Simple_repeat Simple_repeat 2 44 0 940 307 86 22 chr4 168102479 168103015 -16185647 + L2 LINE L2 2567 3131 -182 194 237 93 52 chr4 168106310 168106407 -16182255 - MIR SINE MIR -55 207 107 252 59 0 0 chr4 168106444 168106478 -16182184 + (TA)n Simple_repeat Simple_repeat 1 34 0 2442 112 13 16 chr4 168108234 168108610 -16180052 + THE1C LTR MaLR 1 375 0 8961 117 69 18 chr4 168108610 168110110 -16178552 + THE1C-int LTR MaLR 1 1576 -4 1299 151 12 23 chr4 168110114 168110425 -16178237 + THE1C LTR MaLR 1 375 0 1761 201 19 51 chr4 168110658 168111086 -16177576 - MLT2D LTR ERVL 0 414 1 416 296 75 56 chr4 168111733 168112054 -16176608 + HAL1b LINE L1 172 498 -850 21 57 0 0 chr4 168112736 168112771 -16175891 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr4 168112795 168112819 -16175843 + AT_rich Low_complexity Low_complexity 1 24 0 201 193 18 18 chr4 168114114 168114171 -16174491 + (CA)n Simple_repeat Simple_repeat 2 58 0 24 0 0 0 chr4 168114584 168114608 -16174054 + AT_rich Low_complexity Low_complexity 1 24 0 231 303 56 28 chr4 168115265 168115443 -16173219 + L1ME4a LINE L1 5934 6116 -5 183 226 94 0 chr4 168115545 168115598 -16173064 - L2 LINE L2 0 3272 3215 563 320 61 58 chr4 168115758 168116531 -16172131 + L2 LINE L2 2398 3252 -61 229 308 8 58 chr4 168117573 168117693 -16170969 - L2 LINE L2 0 3313 3200 13419 199 34 17 chr4 168118244 168123216 -16165446 - L1PB2 LINE L1 -3 6864 1811 21 36 0 0 chr4 168123357 168123385 -16165277 + AT_rich Low_complexity Low_complexity 1 28 0 595 313 79 60 chr4 168123488 168123955 -16164707 - L1MEd LINE L1 -5372 747 272 287 105 18 0 chr4 168124107 168124164 -16164498 + (TA)n Simple_repeat Simple_repeat 2 59 0 545 153 15 15 chr4 168124193 168124324 -16164338 + (TA)n Simple_repeat Simple_repeat 2 132 0 405 307 22 62 chr4 168125610 168125789 -16162873 + MER5B DNA MER1_type 4 175 -3 214 293 57 65 chr4 168125680 168125803 -16162859 - MER5A DNA MER1_type -67 122 1 * 207 333 33 33 chr4 168126544 168126664 -16161998 + MER5A DNA MER1_type 48 167 -22 281 321 146 7 chr4 168126895 168127032 -16161630 - L2 LINE L2 -260 3053 2898 351 35 53 0 chr4 168129967 168130024 -16158638 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 23 54 0 0 chr4 168130194 168130231 -16158431 + AT_rich Low_complexity Low_complexity 1 37 0 200 354 25 13 chr4 168130292 168130371 -16158291 + L3 LINE CR1 1497 1576 -1 262 229 0 43 chr4 168130585 168130655 -16158007 + (CATATA)n Simple_repeat Simple_repeat 5 71 0 232 333 0 0 chr4 168130657 168130744 -16157918 - L1MC4 LINE L1 -1341 6701 6615 240 326 0 11 chr4 168130750 168130842 -16157820 + (TATATG)n Simple_repeat Simple_repeat 6 96 0 182 276 18 6 chr4 168130843 168131013 -16157649 + (TA)n Simple_repeat Simple_repeat 1 172 0 1613 222 16 22 chr4 168131139 168131504 -16157158 + MLT1A2 LTR MaLR 10 372 -2 1839 114 72 14 chr4 168132270 168132560 -16156102 - AluSq SINE Alu -6 307 1 258 32 0 0 chr4 168132696 168132727 -16155935 + (TG)n Simple_repeat Simple_repeat 2 32 0 12762 38 10 0 chr4 168132831 168135179 -16153483 + L1PA4 LINE L1 3803 6149 -6 957 269 39 50 chr4 168135181 168135642 -16153020 + L1M4 LINE L1 3750 4205 -1941 263 64 0 64 chr4 168135991 168136038 -16152624 + (A)n Simple_repeat Simple_repeat 1 44 0 2072 118 7 7 chr4 168136110 168136406 -16152256 - AluSx SINE Alu -16 296 1 29 47 0 0 chr4 168137038 168137081 -16151581 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr4 168137180 168137201 -16151461 + AT_rich Low_complexity Low_complexity 1 21 0 2067 121 0 0 chr4 168137799 168138112 -16150550 + AluSx SINE Alu 1 313 0 5038 186 40 20 chr4 168138162 168140323 -16148339 - L1PB1 LINE L1 0 6151 3840 23 0 0 0 chr4 168141409 168141432 -16147230 + AT_rich Low_complexity Low_complexity 1 23 0 1921 147 0 10 chr4 168141950 168142249 -16146413 - AluSx SINE Alu -16 296 1 23 0 0 0 chr4 168142291 168142314 -16146348 + AT_rich Low_complexity Low_complexity 1 23 0 22 88 0 0 chr4 168142522 168142579 -16146083 + AT_rich Low_complexity Low_complexity 1 57 0 21 36 0 0 chr4 168143800 168143828 -16144834 + AT_rich Low_complexity Low_complexity 1 28 0 2280 59 10 0 chr4 168144144 168144432 -16144230 - AluY SINE Alu -18 293 3 2395 81 0 7 chr4 168145613 168145923 -16142739 - AluSx SINE Alu -4 308 1 2009 112 46 0 chr4 168146274 168146559 -16142103 - AluSp SINE Alu -10 303 6 22 56 0 0 chr4 168146911 168146947 -16141715 + AT_rich Low_complexity Low_complexity 1 36 0 2105 96 7 3 chr4 168147710 168147992 -16140670 + AluSq SINE Alu 1 283 -30 23 0 0 0 chr4 168148710 168148733 -16139929 + AT_rich Low_complexity Low_complexity 1 23 0 3035 290 45 16 chr4 168149033 168150198 -16138464 + L1M4b LINE L1 18 1253 -5606 1773 179 25 6 chr4 168150207 168150532 -16138130 + MER44D DNA MER2_type 1 601 -8 553 236 6 31 chr4 168150552 168150713 -16137949 + L1M4b LINE L1 1260 1416 -5443 430 370 56 11 chr4 168150962 168151246 -16137416 + L2 LINE L2 3010 3306 -7 182 205 179 51 chr4 168151306 168151384 -16137278 - L2 LINE L2 0 3313 3226 878 254 41 28 chr4 168151644 168151935 -16136727 + L1MA9 LINE L1 5980 6274 -38 333 329 41 27 chr4 168152132 168152201 -16136461 + L1M4b LINE L1 2740 2807 -4331 2228 121 0 0 chr4 168152201 168152507 -16136155 + AluSg SINE Alu 2 307 -3 333 329 41 27 chr4 168152507 168152656 -16136006 + L1M4b LINE L1 2807 2961 -4177 533 314 71 0 chr4 168152752 168152978 -16135684 + L1M4b LINE L1 4324 4565 -2392 29418 56 2 1 chr4 168152983 168156739 -16131923 + L1P LINE L1 4 3761 -2385 1575 216 16 37 chr4 168156873 168157340 -16131322 + L1M4b LINE L1 1260 1818 -5129 3786 147 74 16 chr4 168157348 168158020 -16130642 + MER50 LTR ERV1 1 711 -23 586 239 0 54 chr4 168158036 168158058 -16130604 + L1M4b LINE L1 1737 1759 -5096 2122 135 114 5 chr4 168158058 168158444 -16130218 - MSTA LTR MaLR 0 428 1 586 239 0 54 chr4 168158444 168158643 -16130019 + L1M4b LINE L1 1759 1946 -4909 881 273 43 35 chr4 168160088 168160575 -16128087 + L1M4b LINE L1 3348 3838 -3119 302 314 60 0 chr4 168160672 168160955 -16127707 + L1M4b LINE L1 4018 4317 -2640 369 295 42 21 chr4 168161210 168161495 -16127167 + L1MDa LINE L1 2204 2494 -4046 * 1066 278 80 5 chr4 168161489 168161913 -16126749 + L1MDa LINE L1 3047 3502 -3038 1312 279 75 23 chr4 168161929 168162766 -16125896 - L1MEc LINE L1 -3616 2599 1767 * 5829 232 23 11 chr4 168162735 168164588 -16124074 - L1PA15-16 LINE L1 -3222 4362 2471 2610 268 42 23 chr4 168164636 168165423 -16123239 - L1PA15-16 LINE L1 -5644 1937 1136 450 132 0 0 chr4 168165534 168165602 -16123060 - AluS SINE Alu -245 68 1 1771 174 42 0 chr4 168165643 168165977 -16122685 - MER7A DNA MER2_type 0 346 1 244 241 19 0 chr4 168166226 168166280 -16122382 + GA-rich Low_complexity Low_complexity 5 59 0 26 0 0 0 chr4 168166564 168166590 -16122072 + AT_rich Low_complexity Low_complexity 1 26 0 310 319 47 43 chr4 168166644 168166879 -16121783 + MER106A DNA MER1_type 1 236 0 389 264 46 22 chr4 168167300 168167543 -16121119 + MER46C DNA MER2_type 1 280 -58 345 338 103 14 chr4 168167618 168167831 -16120831 - MIR SINE MIR -9 253 22 818 277 56 0 chr4 168168695 168168926 -16119736 + MIR SINE MIR 1 244 -18 1942 135 4 0 chr4 168169023 168169304 -16119358 + AluSx SINE Alu 1 282 -30 360 300 85 41 chr4 168169440 168169670 -16118992 + MLT1J LTR MaLR 101 418 -197 21 36 0 0 chr4 168170201 168170229 -16118433 + AT_rich Low_complexity Low_complexity 1 28 0 231 240 109 46 chr4 168171342 168171517 -16117145 - HAL1 LINE L1 -113 2394 2209 735 298 89 41 chr4 168171542 168172083 -16116579 - HAL1 LINE L1 -363 2144 1578 4217 204 16 18 chr4 168172094 168173601 -16115061 + L1MB2 LINE L1 4664 6166 -5 25 0 0 0 chr4 168173825 168173850 -16114812 + AT_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chr4 168173906 168173941 -16114721 + AT_rich Low_complexity Low_complexity 1 35 0 1843 165 139 69 chr4 168174159 168174233 -16114429 - MLT1D LTR MaLR 0 505 438 2199 76 0 36 chr4 168174233 168174534 -16114128 + AluY SINE Alu 7 296 -15 1843 165 139 69 chr4 168174534 168174764 -16113898 - MLT1D LTR MaLR -67 438 225 1935 99 3 55 chr4 168174764 168175057 -16113605 + AluSx SINE Alu 3 280 -32 216 0 0 0 chr4 168175058 168175082 -16113580 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1843 165 139 69 chr4 168175082 168175235 -16113427 - MLT1D LTR MaLR -279 226 13 549 251 97 16 chr4 168175354 168175806 -16112856 + L1ME LINE L1 5090 5594 -572 215 342 53 74 chr4 168175826 168176289 -16112373 - L2 LINE L2 -408 2906 2395 22 0 0 0 chr4 168177016 168177038 -16111624 + AT_rich Low_complexity Low_complexity 1 22 0 580 231 8 88 chr4 168177623 168177861 -16110801 - L1PB4 LINE L1 -1 6155 5937 * 2049 259 86 5 chr4 168177840 168178504 -16110158 - L1PB4 LINE L1 -999 5147 4430 21 36 0 0 chr4 168178634 168178662 -16110000 + AT_rich Low_complexity Low_complexity 1 28 0 2250 88 0 3 chr4 168181443 168181739 -16106923 - AluY SINE Alu -16 295 1 344 336 38 8 chr4 168181928 168182059 -16106603 + L2 LINE L2 3179 3313 0 224 143 0 54 chr4 168184049 168184105 -16104557 + (TATAA)n Simple_repeat Simple_repeat 5 57 0 191 204 19 0 chr4 168184269 168184323 -16104339 + GA-rich Low_complexity Low_complexity 2 56 0 22 35 0 0 chr4 168185240 168185269 -16103393 + AT_rich Low_complexity Low_complexity 1 29 0 31 0 0 0 chr4 168187057 168187088 -16101574 + AT_rich Low_complexity Low_complexity 1 31 0 191 36 36 0 chr4 168187196 168187224 -16101438 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 278 0 0 0 chr4 168187224 168187257 -16101405 - L1PA2 LINE L1 -11 6144 6112 24 0 0 0 chr4 168187434 168187458 -16101204 + AT_rich Low_complexity Low_complexity 1 24 0 1973 131 7 10 chr4 168188483 168188780 -16099882 + AluSx SINE Alu 1 296 -16 239 64 0 85 chr4 168188852 168188899 -16099763 + (T)n Simple_repeat Simple_repeat 1 43 0 3527 221 61 4 chr4 168189237 168190081 -16098581 - L1PA12 LINE L1 -6398 1183 1 760 234 153 20 chr4 168190196 168190589 -16098073 - L1MEc LINE L1 -5063 1333 889 876 107 0 0 chr4 168190748 168190869 -16097793 - AluSg/x SINE Alu -9 303 183 3730 203 31 10 chr4 168190870 168191697 -16096965 - L1MB1 LINE L1 -28 6140 5296 243 326 0 0 chr4 168191717 168191806 -16096856 - L1MA3 LINE L1 -28 6277 6189 10206 211 35 64 chr4 168191809 168192595 -16096067 - L1PA15-16 LINE L1 -181 6825 6018 2240 116 3 0 chr4 168192595 168192905 -16095757 + AluSp SINE Alu 1 311 -2 10206 211 35 64 chr4 168192905 168193579 -16095083 - L1PA15-16 LINE L1 -988 6018 5327 276 30 0 0 chr4 168193579 168193612 -16095050 + (CTACT)n Simple_repeat Simple_repeat 3 35 0 10206 211 35 64 chr4 168193612 168194455 -16094207 - L1PA15-16 LINE L1 -1679 5327 4462 854 70 5 2 chr4 168194455 168194667 -16093995 - AluY SINE Alu -15 296 51 10206 211 35 64 chr4 168194667 168195737 -16092925 - L1PA15-16 LINE L1 -2544 4462 3363 2092 95 13 16 chr4 168195737 168196041 -16092621 - AluSx SINE Alu -4 308 6 10206 211 35 64 chr4 168196041 168198715 -16089947 - L1PA15-16 LINE L1 -3643 3363 703 626 0 14 0 chr4 168198715 168198789 -16089873 + (CA)n Simple_repeat Simple_repeat 2 76 0 10206 211 35 64 chr4 168198789 168199435 -16089227 - L1PA15-16 LINE L1 -6303 703 40 2628 211 6 2 chr4 168199457 168199996 -16088666 - L1 LINE L1 -1984 4162 3622 1799 275 92 31 chr4 168199996 168200664 -16087998 - L1MEc LINE L1 -5568 828 203 2647 0 0 0 chr4 168200664 168200949 -16087713 + AluYa5 SINE Alu 22 306 -5 1799 275 92 31 chr4 168200949 168200966 -16087696 - L1MEc LINE L1 -6193 203 188 2163 122 19 32 chr4 168200966 168201335 -16087327 + THE1B LTR MaLR 1 364 0 1799 275 92 31 chr4 168201335 168201396 -16087266 - L1MEc LINE L1 -6208 188 35 35 24 0 0 chr4 168201706 168201748 -16086914 + AT_rich Low_complexity Low_complexity 1 42 0 241 305 19 29 chr4 168201982 168202087 -16086575 + MIR3 SINE MIR 105 208 0 588 325 119 22 chr4 168202231 168202591 -16086071 + MLT1I LTR MaLR 9 403 -6 184 29 29 29 chr4 168202603 168202637 -16086025 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr4 168203307 168203328 -16085334 + AT_rich Low_complexity Low_complexity 1 21 0 336 373 100 9 chr4 168203934 168204154 -16084508 + L2 LINE L2 2582 2821 -493 213 313 60 94 chr4 168204135 168204368 -16084294 + L2 LINE L2 3004 3228 -44 * 480 281 41 78 chr4 168204455 168204697 -16083965 - MIR SINE MIR 0 262 30 1288 242 61 35 chr4 168205151 168205494 -16083168 - LTR16C LTR ERVL 0 491 140 279 289 215 56 chr4 168205735 168206019 -16082643 + L2 LINE L2 2307 2635 -679 202 292 82 64 chr4 168206041 168206212 -16082450 + L2 LINE L2 3121 3294 -19 188 65 0 32 chr4 168206221 168206252 -16082410 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 1929 154 6 6 chr4 168206455 168206766 -16081896 - AluSx SINE Alu -1 311 1 31 68 0 0 chr4 168208719 168208778 -16079884 + AT_rich Low_complexity Low_complexity 1 59 0 625 69 0 23 chr4 168209223 168209310 -16079352 + AluSg/x SINE Alu 212 296 -16 25 0 0 0 chr4 168209310 168209335 -16079327 + AT_rich Low_complexity Low_complexity 1 25 0 401 266 252 0 chr4 168211455 168211598 -16077064 + MER5A DNA MER1_type 11 189 0 950 180 0 0 chr4 168211626 168211776 -16076886 + AluSg/x SINE Alu 137 286 -26 260 154 19 0 chr4 168212182 168212234 -16076428 + (TA)n Simple_repeat Simple_repeat 1 53 0 210 319 101 8 chr4 168215142 168215261 -16073401 - MIR3 SINE MIR -6 202 73 189 74 0 0 chr4 168216076 168216103 -16072559 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 396 0 0 0 chr4 168216102 168216146 -16072516 + (CA)n Simple_repeat Simple_repeat 2 45 0 1031 108 8 13 chr4 168266159 168267968 -16020694 + HSATII Satellite Satellite 1 1799 -15 956 115 12 16 chr4 168267982 168269114 -16019548 + HSATII Satellite Satellite 1 1128 -99 998 116 12 13 chr4 168269129 168273107 -16015555 + HSATII Satellite Satellite 1 3973 -1 986 115 12 15 chr4 168273130 168277747 -16010915 + HSATII Satellite Satellite 1 4604 -1 1040 119 12 14 chr4 168277777 168279055 -16009607 + HSATII Satellite Satellite 1 1275 -1 971 110 13 8 chr4 168279085 168280207 -16008455 + HSATII Satellite Satellite 1 1127 -1 1010 124 9 10 chr4 168280230 168281298 -16007364 + HSATII Satellite Satellite 1 1066 -1 944 105 19 8 chr4 168281328 168281708 -16006954 + HSATII Satellite Satellite 1 384 -126 1007 110 14 11 chr4 168281837 168283483 -16005179 - HSATII Satellite Satellite 0 1650 1 1052 111 11 12 chr4 168283514 168287008 -16001654 - HSATII Satellite Satellite 0 3491 1 1010 112 11 11 chr4 168287038 168289226 -15999436 - HSATII Satellite Satellite 0 2188 1 1031 121 12 12 chr4 168289256 168290696 -15997966 - HSATII Satellite Satellite -4 1440 1 965 122 22 9 chr4 168290719 168291008 -15997654 - HSATII Satellite Satellite -8 292 1 986 111 11 14 chr4 168291030 168294552 -15994110 - HSATII Satellite Satellite 0 3509 1 998 115 12 13 chr4 168294582 168296328 -15992334 - HSATII Satellite Satellite 0 1744 1 947 114 12 13 chr4 168296358 168298104 -15990558 - HSATII Satellite Satellite 0 1744 1 986 121 11 19 chr4 168298134 168298735 -15989927 - HSATII Satellite Satellite -9 596 1 1043 107 13 3 chr4 168298758 168300984 -15987678 - HSATII Satellite Satellite -102 2248 1 1010 116 13 12 chr4 168301018 168302253 -15986409 - HSATII Satellite Satellite -23 1236 1 940 109 10 11 chr4 168302305 168302844 -15985818 - HSATII Satellite Satellite 0 538 1 730 137 18 18 chr4 168302871 168303039 -15985623 - HSATII Satellite Satellite -2 168 1 1007 107 11 13 chr4 168303070 168305720 -15982942 - HSATII Satellite Satellite -102 2643 1 998 114 11 15 chr4 168305760 168308077 -15980585 - HSATII Satellite Satellite -9 2308 1 956 95 10 11 chr4 168308107 168308639 -15980023 - HSATII Satellite Satellite 0 531 1 763 131 18 18 chr4 168308666 168308834 -15979828 - HSATII Satellite Satellite -2 168 1 980 105 0 14 chr4 168308865 168309086 -15979576 - HSATII Satellite Satellite -1 217 1 986 128 16 19 chr4 168309189 168309609 -15979053 - HSATII Satellite Satellite -8 418 1 998 106 13 9 chr4 168309624 168311350 -15977312 - HSATII Satellite Satellite 0 1732 1 1019 112 14 9 chr4 168311380 168313026 -15975636 - HSATII Satellite Satellite -1 1653 1 986 112 14 15 chr4 168313056 168314335 -15974327 - HSATII Satellite Satellite 0 1277 1 986 111 12 13 chr4 168314365 168316110 -15972552 - HSATII Satellite Satellite 0 1744 1 977 114 14 9 chr4 168316140 168318328 -15970334 - HSATII Satellite Satellite 0 2197 1 940 119 7 17 chr4 168318358 168319053 -15969609 - HSATII Satellite Satellite 0 688 1 790 123 18 18 chr4 168319078 168319248 -15969414 - HSATII Satellite Satellite 0 170 1 998 111 11 13 chr4 168319279 168324760 -15963902 - HSATII Satellite Satellite 0 5472 1 998 114 12 16 chr4 168324791 168327729 -15960933 - HSATII Satellite Satellite 0 2925 1 784 125 18 18 chr4 168327756 168327924 -15960738 - HSATII Satellite Satellite -2 168 1 986 109 11 14 chr4 168327955 168330556 -15958106 - HSATII Satellite Satellite 0 2594 1 1052 111 12 14 chr4 168330587 168335388 -15953274 - HSATII Satellite Satellite 0 4793 1 1007 116 12 15 chr4 168335418 168339415 -15949247 - HSATII Satellite Satellite -8 3985 1 998 110 12 12 chr4 168339430 168342932 -15945730 - HSATII Satellite Satellite 0 3503 1 908 124 11 23 chr4 168342962 168343582 -15945080 - HSATII Satellite Satellite -9 612 1 1043 104 16 0 chr4 168343593 168344411 -15944251 - HSATII Satellite Satellite 0 831 1 965 132 3 18 chr4 168344441 168344765 -15943897 - HSATII Satellite Satellite -1 319 1 2136 128 0 3 chr4 168544901 168545198 -15743464 - AluSx SINE Alu -16 296 1 277 252 0 32 chr4 168546195 168546318 -15742344 + C-rich Low_complexity Low_complexity 3 121 0 726 201 5 55 chr4 168546322 168546521 -15742141 + LOR1a LTR ERV1 309 497 0 1173 246 36 0 chr4 168546526 168546860 -15741802 - L1M4 LINE L1 -1537 6028 5683 962 86 16 0 chr4 168547126 168547254 -15741408 + AluSg/x SINE Alu 173 302 -8 337 300 29 0 chr4 168547711 168547851 -15740811 - L1MEc LINE L1 -4736 1660 1517 1946 116 25 17 chr4 168547853 168548378 -15740284 + LTR10E LTR ERV1 1 602 -31 198 257 119 40 chr4 168549639 168549740 -15738922 + L3b LINE CR1 1273 1381 -202 292 237 59 0 chr4 168551333 168551451 -15737211 + G-rich Low_complexity Low_complexity 2 126 0 21 0 0 0 chr4 168552138 168552159 -15736503 + AT_rich Low_complexity Low_complexity 1 21 0 1247 181 63 41 chr4 168552197 168552467 -15736195 + AluJo SINE Alu 1 276 -36 2450 65 0 13 chr4 168552501 168552807 -15735855 + AluY SINE Alu 1 302 -9 2236 98 7 0 chr4 168553783 168554068 -15734594 + AluSx SINE Alu 10 296 -16 5794 110 9 5 chr4 168554545 168555497 -15733165 - L1PA15 LINE L1 -4 6161 5192 901 161 61 0 chr4 168555513 168555693 -15732969 - L1PA15 LINE L1 -1034 5112 4922 1747 112 22 29 chr4 168555706 168555984 -15732678 - MER1B DNA MER1_type 0 339 64 5149 206 45 30 chr4 168556774 168557518 -15731144 - L1MEc LINE L1 -2762 4803 4072 2293 147 0 9 chr4 168557518 168557858 -15730804 + MER1B DNA MER1_type 1 337 0 5149 206 45 30 chr4 168557858 168558531 -15730131 - L1MEc LINE L1 -3493 4072 3342 1504 178 13 63 chr4 168558531 168558846 -15729816 - AluJo SINE Alu -13 299 1 5149 206 45 30 chr4 168558846 168559212 -15729450 - L1MEc LINE L1 -4223 3342 2983 1830 146 8 0 chr4 168559212 168559499 -15729163 - AluSx SINE Alu 0 312 20 3367 149 40 54 chr4 168563063 168563539 -15725123 - MER4D LTR ERV1 -86 817 353 2116 155 3 0 chr4 168563539 168563849 -15724813 + AluSx SINE Alu 1 311 -1 3367 149 40 54 chr4 168563849 168564056 -15724606 - MER4D LTR ERV1 -550 353 144 1436 143 11 60 chr4 168564255 168564520 -15724142 + AluJb SINE Alu 61 312 0 1850 165 10 0 chr4 168564616 168564907 -15723755 - AluSx SINE Alu -18 294 1 401 246 44 52 chr4 168565107 168565359 -15723303 - L1MEc LINE L1 -5318 2428 2179 1555 233 36 17 chr4 168565969 168566390 -15722272 + LTR40c LTR ERVL 37 465 0 536 294 112 59 chr4 168566557 168567064 -15721598 + MLT1H LTR MaLR 15 548 -1 422 255 93 19 chr4 168567081 168567242 -15721420 + MER104 DNA MER2_type 5 177 -3 881 112 0 0 chr4 168567990 168568115 -15720547 + AluSp/q SINE Alu 185 309 -4 185 388 0 12 chr4 168570740 168570820 -15717842 - L2 LINE L2 -3 3269 3191 642 264 94 39 chr4 168571167 168571497 -15717165 + MLT1A1 LTR MaLR 1 348 -17 4672 182 78 18 chr4 168574536 168575335 -15713327 - L1MC1 LINE L1 -5 6328 5440 2310 120 3 0 chr4 168575335 168575644 -15713018 - AluSx SINE Alu -2 310 1 4672 182 78 18 chr4 168575644 168575917 -15712745 - L1MC1 LINE L1 -893 5440 5185 267 395 44 13 chr4 168576110 168576500 -15712162 - L1MC4a LINE L1 -1847 5961 5560 181 231 77 51 chr4 168576594 168576672 -15711990 + L2 LINE L2 2776 2855 -459 2166 117 10 0 chr4 168576673 168576971 -15711691 - AluSx SINE Alu -7 305 5 508 108 0 0 chr4 168576972 168577046 -15711616 - AluS SINE Alu -238 75 2 292 71 0 0 chr4 168577048 168577090 -15711572 - Alu SINE Alu -260 42 1 624 304 44 22 chr4 168577764 168577991 -15710671 - MIR SINE MIR -25 237 6 418 228 18 23 chr4 168578620 168578791 -15709871 + (CATA)n Simple_repeat Simple_repeat 1 170 0 416 207 7 35 chr4 168578846 168578991 -15709671 + (CATATA)n Simple_repeat Simple_repeat 6 146 0 1267 221 41 0 chr4 168579378 168579827 -15708835 - MLT2B1 LTR ERVL 0 520 2 1575 160 4 23 chr4 168581873 168582136 -15706526 + AluJo SINE Alu 39 296 -16 5668 175 70 16 chr4 168584084 168584248 -15704414 - L1M1 LINE L1 -4065 1263 1109 1379 176 101 7 chr4 168584248 168584526 -15704136 - AluJb SINE Alu -8 304 1 2329 72 21 0 chr4 168584533 168584823 -15703839 - AluY SINE Alu -14 297 2 5668 175 70 16 chr4 168584823 168585903 -15702759 - L1M1 LINE L1 -4224 1104 39 1843 142 35 0 chr4 168585960 168586249 -15702413 - AluSp SINE Alu -12 301 3 1130 69 0 0 chr4 168586254 168586385 -15702277 - AluSp SINE Alu -182 131 1 548 222 0 0 chr4 168586385 168586502 -15702160 - MER33 DNA MER1_type -174 150 34 1484 120 0 40 chr4 168587365 168587590 -15701072 + AluJo SINE Alu 87 302 -10 440 280 86 29 chr4 168588176 168588578 -15700084 - L1MEd LINE L1 -5082 1037 535 299 317 53 61 chr4 168588648 168588910 -15699752 - L1MEd LINE L1 -5737 382 123 291 340 134 34 chr4 168589059 168589648 -15699014 + L2 LINE L2 2191 2838 -476 431 229 77 44 chr4 168590159 168590342 -15698320 + LTR16A LTR ERVL 248 436 -14 2344 105 3 0 chr4 168591256 168591562 -15697100 + AluSq SINE Alu 1 307 -6 1983 142 0 39 chr4 168593360 168593669 -15694993 - AluJo SINE Alu -15 297 1 216 246 70 0 chr4 168595913 168595970 -15692692 + MIR SINE MIR 120 180 -82 321 302 219 23 chr4 168597962 168598346 -15690316 + L2 LINE L2 2853 3311 -2 228 298 85 43 chr4 168602719 168602813 -15685849 - L2 LINE L2 0 3313 3216 1296 91 0 0 chr4 168603099 168603274 -15685388 - L1MA2 LINE L1 0 6304 6130 844 167 0 0 chr4 168603274 168603390 -15685272 - FLAM_C SINE Alu -193 119 1 206 309 27 9 chr4 168603826 168603936 -15684726 + MIR SINE MIR 34 145 -117 5156 139 56 5 chr4 168605582 168606474 -15682188 - Tigger1 DNA MER2_type 0 2418 1481 417 306 43 5 chr4 168606532 168606718 -15681944 - L1MC/D LINE L1 -2081 5727 5535 437 346 54 27 chr4 168606780 168607040 -15681622 - L1MC/D LINE L1 -773 5373 5107 216 261 72 29 chr4 168609084 168609153 -15679509 + L2 LINE L2 3196 3267 -5 360 250 125 40 chr4 168609844 168609996 -15678666 + L1ME4a LINE L1 5956 6120 -1 1820 172 0 10 chr4 168610002 168610293 -15678369 - AluSx SINE Alu -22 290 3 2214 139 3 0 chr4 168610363 168610716 -15677946 - THE1B LTR MaLR 0 364 11 275 210 40 30 chr4 168610852 168610952 -15677710 + (CATATA)n Simple_repeat Simple_repeat 1 101 0 1070 152 41 25 chr4 168610965 168611162 -15677500 - AluJb SINE Alu -87 225 26 899 215 28 42 chr4 168613348 168613636 -15675026 + L1MCc LINE L1 1226 1509 -4914 1097 130 9 9 chr4 168614333 168614870 -15673792 + (TGGA)n Simple_repeat Simple_repeat 1 537 0 849 145 14 0 chr4 168614895 168615184 -15673478 + (TGGA)n Simple_repeat Simple_repeat 1 293 0 182 231 15 0 chr4 168615199 168615264 -15673398 + (TGGA)n Simple_repeat Simple_repeat 4 69 0 545 212 6 0 chr4 168615279 168615458 -15673204 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 785 179 7 0 chr4 168615472 168615759 -15672903 + (TGGA)n Simple_repeat Simple_repeat 1 289 0 350 284 0 0 chr4 168617210 168617291 -15671371 - L2 LINE L2 -12 3260 3180 2259 126 33 38 chr4 168617355 168617720 -15670942 + THE1B LTR MaLR 2 364 0 12112 90 10 3 chr4 168617721 168619289 -15669373 + THE1B-int LTR MaLR 2 1580 0 2105 126 29 79 chr4 168619291 168619672 -15668990 + THE1B LTR MaLR 3 364 0 2552 187 53 4 chr4 168620688 168621211 -15667451 - MER41D LTR ERV1 -8 549 1 2665 175 14 37 chr4 168623966 168624537 -15664125 + L1M3 LINE L1 5260 5817 -363 2303 100 0 3 chr4 168624714 168625015 -15663647 + AluSg SINE Alu 1 300 -10 2341 125 85 3 chr4 168625084 168625460 -15663202 + MER4B-int LTR ERV1 6351 6757 -1 1512 109 73 4 chr4 168625460 168625707 -15662955 + MER4B LTR ERV1 1 264 -346 227 135 0 0 chr4 168625729 168625766 -15662896 - LTR34 LTR ERV1 -399 300 264 3156 141 57 93 chr4 168625790 168625911 -15662751 - LTR8 LTR ERV1 0 691 567 2328 92 7 0 chr4 168625911 168626206 -15662456 - AluSp SINE Alu -14 299 3 3156 141 57 93 chr4 168626206 168626629 -15662033 - LTR8 LTR ERV1 -124 567 177 2256 50 32 0 chr4 168626629 168626910 -15661752 + L1PA7 LINE L1 5865 6154 0 3156 141 57 93 chr4 168626910 168627081 -15661581 - LTR8 LTR ERV1 -514 177 1 481 189 58 175 chr4 168627081 168627299 -15661363 - LTR34 LTR ERV1 -442 257 80 5045 79 16 26 chr4 168627299 168627997 -15660665 - LTR8 LTR ERV1 0 691 1 481 189 58 175 chr4 168627997 168628068 -15660594 - LTR34 LTR ERV1 -619 80 2 2511 64 0 16 chr4 168628190 168628501 -15660161 - AluY SINE Alu -5 306 1 689 263 96 4 chr4 168629393 168629633 -15659029 + MIR SINE MIR 1 262 0 1708 140 8 4 chr4 168629790 168630047 -15658615 - AluSc SINE Alu -8 301 44 2055 110 13 10 chr4 168630047 168630345 -15658317 - AluSp SINE Alu -13 300 1 249 264 95 70 chr4 168631123 168631365 -15657297 + L1MC5 LINE L1 7679 7926 -35 2328 99 0 3 chr4 168632037 168632330 -15656332 + AluSx SINE Alu 1 292 -20 546 111 0 93 chr4 168633493 168633601 -15655061 + FRAM SINE Alu 69 166 -10 800 131 16 0 chr4 168633948 168634070 -15654592 + AluSg/x SINE Alu 174 297 -13 278 303 57 41 chr4 168635786 168635908 -15652754 + L2 LINE L2 2021 2144 -1170 280 237 281 9 chr4 168635912 168636026 -15652636 + L2 LINE L2 3169 3313 0 310 313 52 62 chr4 168636296 168636488 -15652174 - L1ME LINE L1 -5860 210 21 376 250 183 67 chr4 168636616 168636687 -15651975 - L1ME LINE L1 -547 5574 5513 2510 93 0 0 chr4 168636687 168636999 -15651663 - AluSx SINE Alu 0 312 1 376 250 183 67 chr4 168636999 168637151 -15651511 - L1ME LINE L1 -608 5513 5325 441 270 80 0 chr4 168637299 168637462 -15651200 + LTR33A LTR ERVL 336 511 -12 550 290 98 50 chr4 168637478 168637821 -15650841 - L1ME LINE L1 -815 5331 4950 29 28 0 0 chr4 168638003 168638039 -15650623 + AT_rich Low_complexity Low_complexity 1 36 0 1647 189 10 19 chr4 168638135 168638448 -15650214 + AluJb SINE Alu 1 310 -2 188 91 0 106 chr4 168638449 168638515 -15650147 + (GGAAA)n Simple_repeat Simple_repeat 1 59 0 231 36 0 0 chr4 168638749 168638777 -15649885 + (A)n Simple_repeat Simple_repeat 1 28 0 780 153 173 149 chr4 168638870 168639165 -15649497 - AluJb SINE Alu 0 302 1 210 274 0 55 chr4 168639185 168639258 -15649404 - L2 LINE L2 0 3313 3245 2405 96 3 0 chr4 168639290 168639593 -15649069 + AluSp SINE Alu 1 304 -9 2175 139 0 0 chr4 168640607 168640917 -15647745 + AluSx SINE Alu 1 310 -2 347 200 74 11 chr4 168641224 168641319 -15647343 + MIR SINE MIR 33 133 -75 730 227 46 59 chr4 168641747 168641985 -15646677 - MIR SINE MIR -21 241 7 1553 171 0 4 chr4 168644680 168644926 -15643736 + AluSx SINE Alu 5 249 -63 10004 185 97 33 chr4 168644926 168645626 -15643036 + L1MC1 LINE L1 808 1462 -5151 2419 110 0 0 chr4 168645626 168645934 -15642728 + AluSq SINE Alu 1 308 -5 10004 185 97 33 chr4 168645934 168646158 -15642504 + L1MC1 LINE L1 1462 1670 -4943 2837 56 6 8 chr4 168646158 168646514 -15642148 - THE1A LTR MaLR 0 355 1 10004 185 97 33 chr4 168646514 168646732 -15641930 + L1MC1 LINE L1 1670 1873 -4740 1536 174 128 10 chr4 168646732 168647037 -15641625 - MER2 DNA MER2_type -1 343 3 10004 185 97 33 chr4 168647037 168648751 -15639911 + L1MC1 LINE L1 1873 3476 -3137 1967 121 0 48 chr4 168648751 168649066 -15639596 + AluSx SINE Alu 3 302 -10 10004 185 97 33 chr4 168649066 168649275 -15639387 + L1MC1 LINE L1 3476 3670 -2943 1741 178 0 6 chr4 168649275 168649589 -15639073 + AluJb SINE Alu 1 312 0 10004 185 97 33 chr4 168649589 168651620 -15637042 + L1MC1 LINE L1 3670 6203 -410 521 219 66 36 chr4 168651620 168651757 -15636905 + Tigger5 DNA MER2_type 1 141 -2182 241 140 0 159 chr4 168651792 168652006 -15636656 + (ATATG)n Simple_repeat Simple_repeat 1 180 0 456 191 22 0 chr4 168652143 168652232 -15636430 + Tigger5 DNA MER2_type 144 234 -2089 * 1354 161 39 0 chr4 168652226 168652456 -15636206 + Tigger5 DNA MER2_type 2085 2323 0 2244 158 7 43 chr4 168652456 168652817 -15635845 + L1MC1 LINE L1 6202 6548 -65 2128 95 27 0 chr4 168652817 168653111 -15635551 - AluSq SINE Alu -11 302 1 2244 158 7 43 chr4 168653111 168653167 -15635495 + L1MC1 LINE L1 6548 6604 -9 938 186 0 0 chr4 168653167 168653344 -15635318 + FRAM SINE Alu 1 175 -1 265 314 102 7 chr4 168653607 168653744 -15634918 - L2 LINE L2 -1 3271 3122 479 328 7 12 chr4 168654542 168654737 -15633925 + MIR SINE MIR 13 207 -55 1476 155 90 4 chr4 168654831 168655108 -15633554 + AluSq SINE Alu 1 301 -12 219 246 62 31 chr4 168655186 168655251 -15633411 + L2 LINE L2 3246 3312 -1 637 120 31 109 chr4 168655386 168655557 -15633105 + Charlie5 DNA MER1_type 2424 2579 -33 335 160 0 0 chr4 168655557 168655607 -15633055 + Alu SINE Alu 1 50 -250 1839 123 3 10 chr4 168655707 168655999 -15632663 - AluSx SINE Alu -22 290 1 332 197 0 0 chr4 168656017 168656083 -15632579 - FLAM SINE Alu 0 133 68 30 45 0 0 chr4 168656083 168656127 -15632535 + AT_rich Low_complexity Low_complexity 1 44 0 2315 92 0 0 chr4 168656341 168656646 -15632016 + AluY SINE Alu 1 305 -6 270 0 0 0 chr4 168656654 168656684 -15631978 + (TG)n Simple_repeat Simple_repeat 2 31 0 2119 99 7 0 chr4 168656951 168657233 -15631429 + AluSx SINE Alu 1 284 -28 183 80 0 0 chr4 168657235 168657260 -15631402 + (TA)n Simple_repeat Simple_repeat 1 25 0 2366 73 3 0 chr4 168657398 168657701 -15630961 + AluSg SINE Alu 1 304 -6 587 238 81 16 chr4 168657975 168658160 -15630502 - L1M4 LINE L1 -2588 3558 3362 1030 277 36 6 chr4 168658163 168658495 -15630167 - L1M4 LINE L1 -3568 2578 2237 321 217 11 43 chr4 168658495 168658587 -15630075 + LTR16C LTR ERVL 401 489 -2 1810 134 11 0 chr4 168658822 168659105 -15629557 + AluJo SINE Alu 3 288 -24 2101 100 3 10 chr4 168659287 168659588 -15629074 + AluSx SINE Alu 1 299 -13 59 38 0 0 chr4 168659633 168659713 -15628949 + AT_rich Low_complexity Low_complexity 1 80 0 2192 108 0 0 chr4 168660079 168660375 -15628287 + AluSx SINE Alu 1 296 -16 36 23 0 0 chr4 168660834 168660877 -15627785 + AT_rich Low_complexity Low_complexity 1 43 0 2253 71 0 0 chr4 168661377 168661674 -15626988 + AluSx SINE Alu 2 298 -14 2637 26 0 3 chr4 168661757 168662065 -15626597 + AluY SINE Alu 1 307 -4 1581 138 48 48 chr4 168662203 168662515 -15626147 + AluSx SINE Alu 1 312 0 350 185 15 0 chr4 168662560 168662625 -15626037 - MER94 DNA DNA -25 109 44 2099 132 0 10 chr4 168662819 168663130 -15625532 - AluSx SINE Alu -4 308 1 1426 209 3 0 chr4 168663132 168663414 -15625248 - AluJo SINE Alu -24 288 6 522 224 48 41 chr4 168663415 168663562 -15625100 + L2 LINE L2 3141 3288 -25 2324 65 0 0 chr4 168663968 168664290 -15624372 + AluY SINE Alu 1 311 0 1963 101 0 73 chr4 168665150 168665466 -15623196 - AluSx SINE Alu -19 293 1 1815 166 55 0 chr4 168666087 168666413 -15622249 - MER2 DNA MER2_type 0 344 1 394 252 74 0 chr4 168666911 168667046 -15621616 + L1ME4a LINE L1 5974 6118 -3 2252 137 114 5 chr4 168667513 168667899 -15620763 + MSTA LTR MaLR 1 428 0 243 324 0 14 chr4 168668493 168668517 -15620145 - L2 LINE L2 -3 3269 3246 2119 119 3 0 chr4 168668517 168668819 -15619843 + AluSg SINE Alu 1 303 -7 243 324 0 14 chr4 168668819 168668868 -15619794 - L2 LINE L2 -26 3246 3197 712 320 126 11 chr4 168668883 168669342 -15619320 - L2 LINE L2 -775 2539 2028 1096 133 0 0 chr4 168669537 168669702 -15618960 + AluSg/x SINE Alu 135 299 -13 856 221 151 62 chr4 168669710 168669853 -15618809 + AluJo SINE Alu 2 131 -181 1872 140 0 7 chr4 168669853 168670153 -15618509 + AluSx SINE Alu 1 298 -14 856 221 151 62 chr4 168670153 168670267 -15618395 + AluJo SINE Alu 131 282 -30 479 280 6 30 chr4 168670335 168670503 -15618159 + L1ME LINE L1 5613 5776 -394 506 129 32 11 chr4 168670565 168670658 -15618004 + THE1C LTR MaLR 281 375 0 * 744 130 172 2 chr4 168670658 168670790 -15617872 - MSTA LTR MaLR -231 144 1 182 296 19 19 chr4 168670930 168670984 -15617678 + MIR SINE MIR 91 144 -64 203 193 48 96 chr4 168671728 168671811 -15616851 - L2 LINE L2 -18 3295 3217 815 173 7 0 chr4 168672163 168672302 -15616360 - MER2 DNA MER2_type -205 140 1 331 143 0 0 chr4 168673856 168673912 -15614750 + Alu SINE Alu 247 302 0 445 270 163 69 chr4 168673944 168674263 -15614399 + L1ME4a LINE L1 5403 5751 -370 390 258 74 6 chr4 168674584 168674747 -15613915 + L1ME4a LINE L1 5945 6118 -3 2271 135 114 5 chr4 168675214 168675600 -15613062 + MSTA LTR MaLR 1 428 0 243 324 0 14 chr4 168676194 168676218 -15612444 - L2 LINE L2 -3 3269 3246 2085 123 3 0 chr4 168676218 168676519 -15612143 + AluSg SINE Alu 1 302 -8 243 324 0 14 chr4 168676519 168676568 -15612094 - L2 LINE L2 -26 3246 3197 710 320 126 11 chr4 168676583 168677042 -15611620 - L2 LINE L2 -775 2539 2028 1089 134 0 0 chr4 168677237 168677401 -15611261 + AluSg/x SINE Alu 135 298 -14 856 221 151 62 chr4 168677409 168677552 -15611110 + AluJo SINE Alu 2 131 -181 1898 137 0 7 chr4 168677552 168677852 -15610810 + AluSx SINE Alu 1 298 -14 856 221 151 62 chr4 168677852 168677966 -15610696 + AluJo SINE Alu 131 282 -30 479 280 6 30 chr4 168678034 168678202 -15610460 + L1ME LINE L1 5613 5776 -394 1829 108 48 37 chr4 168678601 168678896 -15609766 - AluSx SINE Alu -14 298 1 2088 96 27 7 chr4 168678968 168679260 -15609402 - AluSx SINE Alu -14 298 1 1880 152 0 0 chr4 168679280 168679577 -15609085 - AluJo SINE Alu -15 297 1 805 203 25 0 chr4 168679777 168679935 -15608727 + AluJb SINE Alu 136 297 -15 200 285 44 22 chr4 168680157 168680294 -15608368 + (TCTCTG)n Simple_repeat Simple_repeat 3 142 0 664 136 12 120 chr4 168680761 168680934 -15607728 + L1PB4 LINE L1 6016 6165 -1 1376 192 3 63 chr4 168680938 168681256 -15607406 + AluJo SINE Alu 1 299 -13 23 33 0 0 chr4 168681256 168681286 -15607376 + AT_rich Low_complexity Low_complexity 1 30 0 262 182 36 0 chr4 168682077 168682132 -15606530 + MLT1G1 LTR MaLR 1 57 -538 342 223 129 62 chr4 168682439 168682632 -15606030 + MLT1G LTR MaLR 340 545 -45 217 366 130 0 chr4 168682682 168682813 -15605849 - MIR SINE MIR -18 244 97 857 118 321 0 chr4 168683514 168683701 -15604961 - AluJb SINE Alu -15 297 51 2133 101 0 0 chr4 168684712 168685008 -15603654 - AluSx SINE Alu -16 296 1 1522 171 17 7 chr4 168686805 168687098 -15601564 + AluJo SINE Alu 1 296 -16 375 214 61 10 chr4 168687357 168687455 -15601207 + LTR56 LTR ERV1 1 103 -342 1371 166 32 36 chr4 168688329 168688371 -15600291 - AluJo SINE Alu -35 277 236 5330 67 121 16 chr4 168688371 168689117 -15599545 + LTR12 LTR ERV1 3 826 0 1371 166 32 36 chr4 168689117 168689352 -15599310 - AluJo SINE Alu -76 236 1 539 250 83 12 chr4 168689352 168689520 -15599142 + LTR56 LTR ERV1 150 329 -116 2036 189 170 9 chr4 168690304 168690844 -15597818 - MER67B LTR ERV1 -33 628 2 1955 126 0 13 chr4 168691437 168691739 -15596923 + AluSx SINE Alu 1 298 -14 1864 114 59 0 chr4 168692011 168692283 -15596379 + AluSg SINE Alu 1 288 -22 432 263 167 11 chr4 168692322 168692592 -15596070 + HAL1 LINE L1 1339 1650 -857 733 198 0 0 chr4 168692636 168692762 -15595900 + AluJb SINE Alu 137 262 -50 1406 116 22 9 chr4 168692866 168693090 -15595572 + AluSq SINE Alu 70 296 -17 22909 107 42 54 chr4 168693090 168693686 -15594976 - MER4B-int LTR ERV1 -698 6060 5458 1684 151 49 11 chr4 168693686 168693970 -15594692 - AluSq SINE Alu -18 295 1 22909 107 42 54 chr4 168693970 168694678 -15593984 - MER4B-int LTR ERV1 -1300 5458 4743 5565 144 139 28 chr4 168694678 168695828 -15592834 + MER52C LTR ERV1 1 1278 0 22909 107 42 54 chr4 168695828 168696285 -15592377 - MER4B-int LTR ERV1 -2015 4743 4282 2379 58 3 0 chr4 168696285 168696578 -15592084 - AluY SINE Alu -17 294 1 22909 107 42 54 chr4 168696578 168698932 -15589730 - MER4B-int LTR ERV1 -2476 4282 1713 1968 154 3 0 chr4 168698932 168699243 -15589419 - AluSx SINE Alu 0 312 1 22909 107 42 54 chr4 168699243 168700160 -15588502 - MER4B-int LTR ERV1 -5045 1713 786 665 87 0 11 chr4 168700160 168700252 -15588410 - MER4B LTR ERV1 -519 91 1 * 1636 196 55 37 chr4 168700252 168700300 -15588362 + LTR34 LTR ERV1 308 354 -345 2269 90 7 0 chr4 168700300 168700599 -15588063 + AluSp SINE Alu 1 301 -12 1636 196 55 37 chr4 168700599 168700931 -15587731 + LTR34 LTR ERV1 354 695 -4 855 193 85 148 chr4 168701000 168701493 -15587169 + MER4C LTR ERV1 1 462 -3 1909 144 3 13 chr4 168701526 168701661 -15587001 + AluSx SINE Alu 1 136 -176 2049 111 13 10 chr4 168701661 168701959 -15586703 + AluSq SINE Alu 1 299 -14 1909 144 3 13 chr4 168701959 168702129 -15586533 + AluSx SINE Alu 136 303 -9 331 305 34 8 chr4 168702699 168702817 -15585845 - MIR3 SINE MIR -75 133 13 2196 103 0 0 chr4 168702894 168703195 -15585467 + AluSg SINE Alu 1 301 -9 1906 122 0 21 chr4 168703708 168703995 -15584667 + AluSx SINE Alu 1 281 -31 576 0 0 0 chr4 168703998 168704062 -15584600 + (TA)n Simple_repeat Simple_repeat 2 65 0 1901 115 3 10 chr4 168704648 168704936 -15583726 - AluSg SINE Alu -24 286 1 417 133 256 0 chr4 168704957 168705047 -15583615 - AluJo SINE Alu -175 137 25 1035 192 46 50 chr4 168705108 168705389 -15583273 + AluJo SINE Alu 3 282 -30 2388 48 0 3 chr4 168705389 168705683 -15582979 - AluY SINE Alu -18 293 1 660 307 70 14 chr4 168706648 168706855 -15581807 + MIR SINE MIR 34 255 -7 2181 154 49 5 chr4 168706855 168707263 -15581399 + MSTA LTR MaLR 1 426 -2 22 0 0 0 chr4 168707361 168707383 -15581279 + AT_rich Low_complexity Low_complexity 1 22 0 1124 216 237 27 chr4 168707490 168707903 -15580759 + MLT1E1 LTR MaLR 42 541 -113 2612 146 37 0 chr4 168708307 168708717 -15579945 - MSTB LTR MaLR 0 426 2 646 116 0 103 chr4 168708997 168709098 -15579564 + FLAM_C SINE Alu 13 96 -216 2023 130 3 0 chr4 168709098 168709398 -15579264 - AluSq SINE Alu -12 301 1 646 116 0 103 chr4 168709398 168709442 -15579220 + FLAM_C SINE Alu 96 143 -169 331 217 51 116 chr4 168709449 168709587 -15579075 - L1MC4 LINE L1 -53 7989 7861 998 189 52 89 chr4 168709601 168709624 -15579038 - MLT1A1 LTR MaLR 0 428 406 3843 199 34 39 chr4 168709624 168710582 -15578080 - LTR13 LTR ERVK 0 954 1 998 189 52 89 chr4 168710582 168710687 -15577975 - MLT1A1 LTR MaLR -22 406 299 2476 53 0 0 chr4 168710687 168710986 -15577676 + AluY SINE Alu 2 300 -11 998 189 52 89 chr4 168710986 168711183 -15577479 - MLT1A1 LTR MaLR -129 299 58 1774 153 14 3 chr4 168711183 168711478 -15577184 - AluJo SINE Alu -14 298 1 998 189 52 89 chr4 168711478 168711534 -15577128 - MLT1A1 LTR MaLR -370 58 1 3427 238 93 63 chr4 168711534 168711766 -15576896 - L1MC4 LINE L1 -191 7851 7627 1471 164 64 18 chr4 168711766 168712046 -15576616 - AluJo SINE Alu -19 293 1 3427 238 93 63 chr4 168712046 168713160 -15575502 - L1MC4 LINE L1 -415 7627 6465 2095 62 0 11 chr4 168713675 168713951 -15574711 - AluSc SINE Alu -14 295 23 752 242 39 9 chr4 168714832 168715063 -15573599 + MER65A LTR ERV1 1 238 -207 40 49 0 0 chr4 168715711 168715772 -15572890 + GC_rich Low_complexity Low_complexity 1 61 0 2329 90 0 0 chr4 168717722 168718032 -15570630 - AluSg SINE Alu 0 310 1 2411 70 0 0 chr4 168718078 168718377 -15570285 - AluSc SINE Alu -10 299 1 726 220 0 0 chr4 168718883 168719015 -15569647 - FLAM_C SINE Alu -1 132 1 2137 95 0 0 chr4 168719587 168719907 -15568755 - AluSx SINE Alu 0 320 1 557 180 0 79 chr4 168719907 168720046 -15568616 - FLAM_A SINE Alu -4 129 2 430 149 23 11 chr4 168721191 168721278 -15567384 + L1MB8 LINE L1 6091 6178 0 2187 88 0 0 chr4 168721290 168721585 -15567077 + AluY SINE Alu 1 295 -16 1451 257 33 77 chr4 168721743 168722300 -15566362 + L2 LINE L2 2672 3208 -105 1560 183 27 10 chr4 168722300 168722601 -15566061 - AluJo SINE Alu -6 306 1 1451 257 33 77 chr4 168722601 168722703 -15565959 + L2 LINE L2 3208 3313 0 407 181 181 0 chr4 168722737 168722831 -15565831 - MER81 DNA DNA 0 114 4 881 199 0 6 chr4 168723621 168723782 -15564880 - MLT1A2 LTR MaLR 0 374 215 282 261 45 18 chr4 168723914 168724025 -15564637 + HAL1 LINE L1 1132 1245 -1262 733 208 160 91 chr4 168724042 168724368 -15564294 + MER57A LTR ERV1 3 360 -43 1973 104 3 45 chr4 168724368 168724677 -15563985 + AluSg SINE Alu 1 296 -14 733 208 160 91 chr4 168724677 168724725 -15563937 + MER57A LTR ERV1 360 403 0 443 249 37 32 chr4 168725010 168725199 -15563463 + HAL1 LINE L1 2198 2387 -120 203 189 0 0 chr4 168725231 168725268 -15563394 + T-rich Low_complexity Low_complexity 1 37 0 215 304 0 14 chr4 168725337 168725406 -15563256 + (TATATG)n Simple_repeat Simple_repeat 1 68 0 349 191 11 67 chr4 168725593 168725682 -15562980 + L2 LINE L2 3229 3312 -1 332 232 92 59 chr4 168725858 168726130 -15562532 + L1MEc LINE L1 2111 2350 -3865 4400 158 65 7 chr4 168727363 168728174 -15560488 - L1MB3 LINE L1 -2 6181 5324 1913 125 3 10 chr4 168728801 168729097 -15559565 - AluSx SINE Alu -18 294 1 1012 151 100 161 chr4 168729317 168729628 -15559034 - AluJo SINE Alu -10 292 1 304 282 0 14 chr4 168731131 168731202 -15557460 - L2 LINE L2 -17 3255 3186 1624 159 19 25 chr4 168731288 168731602 -15557060 - AluJb SINE Alu 0 312 1 1171 135 67 25 chr4 168731609 168731891 -15556771 - L1MA8 LINE L1 -3 6288 5995 254 214 122 61 chr4 168732377 168732508 -15556154 - L1ME4a LINE L1 -1 6120 5982 180 278 100 11 chr4 168733304 168733394 -15555268 + MIR3 SINE MIR 58 155 -53 1805 125 75 198 chr4 168734336 168735032 -15553630 - MER4B LTR ERV1 0 610 1 743 217 97 14 chr4 168735449 168735666 -15552996 - MLT1D LTR MaLR -21 484 250 1013 160 0 48 chr4 168735775 168735962 -15552700 - AluJo SINE Alu -50 262 85 633 238 77 17 chr4 168735963 168736144 -15552518 - MLT1D LTR MaLR -313 192 1 409 216 121 0 chr4 168736208 168736324 -15552338 + MER104 DNA Tc2 42 171 -9 228 183 268 12 chr4 168736995 168737077 -15551585 - MIR SINE MIR -37 225 123 531 0 0 0 chr4 168737755 168737814 -15550848 + (TA)n Simple_repeat Simple_repeat 2 60 0 2276 68 3 3 chr4 168737815 168738109 -15550553 - AluY SINE Alu -17 294 1 481 271 7 2 chr4 168738382 168738536 -15550126 - L1MCa LINE L1 -4471 1955 1743 1957 184 130 16 chr4 168738540 168739025 -15549637 - L1MC2 LINE L1 -8 6336 5797 * 3463 174 72 11 chr4 168739019 168739750 -15548912 - L1MB5 LINE L1 -17 6157 5382 512 178 22 0 chr4 168739754 168739844 -15548818 - MER63 DNA MER1_type -273 789 698 855 180 12 6 chr4 168740924 168741085 -15547577 - FRAM SINE Alu 0 166 5 2247 236 52 37 chr4 168741099 168741405 -15547257 - L1MB8 LINE L1 0 6178 5878 1602 169 13 23 chr4 168741405 168741706 -15546956 - AluJb SINE Alu -14 298 1 2247 236 52 37 chr4 168741706 168742076 -15546586 - L1MB8 LINE L1 -300 5878 5492 1892 175 121 6 chr4 168742076 168742431 -15546231 - MER57A LTR ERV1 0 403 8 913 127 38 6 chr4 168742433 168742590 -15546072 - L1MB8 LINE L1 -699 5485 5324 2265 81 3 0 chr4 168742606 168742901 -15545761 - AluSc SINE Alu -7 302 7 2754 173 96 63 chr4 168742961 168743099 -15545563 - MER44D DNA MER2_type -1882 605 473 1701 142 3 24 chr4 168743099 168743395 -15545267 - AluSx SINE Alu -2 310 21 2754 173 96 63 chr4 168743395 168743966 -15544696 - MER44D DNA MER2_type -2014 473 1 759 217 209 4 chr4 168744205 168744449 -15544213 + MER58B DNA MER1_type 35 328 -13 1518 92 0 0 chr4 168744827 168745033 -15543629 - AluY SINE Alu -5 306 101 23 68 0 0 chr4 168745218 168745262 -15543400 + AT_rich Low_complexity Low_complexity 1 44 0 2014 129 21 0 chr4 168749589 168749876 -15538786 + AluSx SINE Alu 1 293 -19 1569 122 0 0 chr4 168751231 168751452 -15537210 + AluSg/x SINE Alu 89 309 -1 1655 164 20 43 chr4 168751480 168751785 -15536877 + AluJo SINE Alu 1 298 -14 2420 72 7 0 chr4 168751823 168752115 -15536547 + AluSc SINE Alu 1 294 -15 594 167 61 35 chr4 168752207 168752321 -15536341 - AluSq/x SINE Alu -195 118 2 710 237 47 6 chr4 168752522 168752691 -15535971 - FAM SINE Alu -9 40 1 2375 70 7 0 chr4 168753495 168753780 -15534882 - AluSp SINE Alu -3 310 24 2505 70 3 0 chr4 168754294 168754595 -15534067 - AluY SINE Alu -9 302 1 552 164 0 27 chr4 168754605 168754715 -15533947 - FLAM_A SINE Alu -7 135 29 1509 179 62 7 chr4 168754737 168755010 -15533652 + AluJo SINE Alu 1 288 -24 227 250 62 0 chr4 168756620 168756700 -15531962 - MER58B DNA MER1_type -232 109 25 1478 176 54 4 chr4 168757377 168757656 -15531006 - AluJb SINE Alu -17 295 3 1493 194 7 24 chr4 168757656 168757950 -15530712 - AluJo SINE Alu -15 297 9 240 316 90 26 chr4 168758131 168758286 -15530376 - MIR SINE MIR 0 262 98 4242 184 42 42 chr4 168758736 168759099 -15529563 + L1MB3 LINE L1 3673 4035 -2148 2585 59 0 0 chr4 168759099 168759402 -15529260 + AluY SINE Alu 1 303 -8 4242 184 42 42 chr4 168759402 168759576 -15529086 + L1MB3 LINE L1 4035 4208 -1975 189 74 0 0 chr4 168759576 168759603 -15529059 + (TA)n Simple_repeat Simple_repeat 1 27 0 4242 184 42 42 chr4 168759603 168759623 -15529039 + L1MB3 LINE L1 4208 4227 -1956 1974 147 0 13 chr4 168759623 168759923 -15528739 - AluJb SINE Alu -14 298 3 4242 184 42 42 chr4 168759923 168761208 -15527454 + L1MB3 LINE L1 4227 6151 -32 2253 115 0 3 chr4 168761227 168761522 -15527140 - AluSx SINE Alu -18 294 1 278 241 0 0 chr4 168761637 168761691 -15526971 - AluJ/FRAM SINE Alu -23 279 226 1964 156 3 3 chr4 168762510 168762811 -15525851 + AluSx SINE Alu 1 301 -11 304 313 99 6 chr4 168764455 168764637 -15524025 - MIR SINE MIR -56 206 8 450 178 183 3 chr4 168764758 168764911 -15523751 - MER46A DNA MER2_type 0 236 10 543 283 67 18 chr4 168766404 168766627 -15522035 + MIR SINE MIR 2 235 -27 2207 98 0 7 chr4 168766692 168767026 -15521636 - AluSq SINE Alu 0 332 1 295 122 0 41 chr4 168767704 168767753 -15520909 - AluJ/FLAM SINE Alu -243 59 13 232 181 42 28 chr4 168767929 168768001 -15520661 - L1MCa LINE L1 -5022 1404 1332 259 273 41 83 chr4 168768643 168768764 -15519898 + MER5A DNA MER1_type 46 161 -28 188 236 0 18 chr4 168768716 168768771 -15519891 - MER5A DNA MER1_type -103 86 33 * 297 279 47 23 chr4 168769695 168769867 -15518795 + (CTCA)n Simple_repeat Simple_repeat 3 178 0 217 305 49 6 chr4 168770600 168770764 -15517898 + (CTCA)n Simple_repeat Simple_repeat 4 174 0 226 307 42 12 chr4 168770836 168771002 -15517660 + (CTCA)n Simple_repeat Simple_repeat 4 174 0 632 160 15 76 chr4 168772761 168772892 -15515770 - FAM SINE Alu -13 172 50 1490 204 21 0 chr4 168774122 168774404 -15514258 + Tigger1 DNA MER2_type 2 289 -2129 1661 172 71 34 chr4 168774404 168774810 -15513852 - THE1C LTR MaLR -3 425 1 * 12306 138 58 8 chr4 168774810 168775013 -15513649 + Tigger1 DNA MER2_type 284 474 -1944 2110 108 0 34 chr4 168775013 168775310 -15513352 + AluSx SINE Alu 11 297 -15 12306 138 58 8 chr4 168775310 168777139 -15511523 + Tigger1 DNA MER2_type 474 2418 0 185 0 40 0 chr4 168777853 168777878 -15510784 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 634 271 110 68 chr4 168778186 168778649 -15510013 + L1MC4a LINE L1 5404 5775 -530 2315 96 0 10 chr4 168780027 168780329 -15508333 - AluSx SINE Alu -13 299 1 627 229 15 0 chr4 168781166 168781297 -15507365 - FLAM_A SINE Alu 0 133 1 210 245 21 21 chr4 168781308 168781351 -15507311 + (TA)n Simple_repeat Simple_repeat 1 43 -51 2461 58 0 3 chr4 168781351 168781644 -15507018 + AluY SINE Alu 1 292 -19 210 245 21 21 chr4 168781644 168781694 -15506968 + (TA)n Simple_repeat Simple_repeat 42 94 0 1644 124 137 0 chr4 168781975 168782263 -15506399 + AluSx SINE Alu 1 322 0 692 144 7 50 chr4 168783280 168783419 -15505243 - AluJo SINE Alu -178 134 2 2069 121 7 7 chr4 168783448 168783738 -15504924 + AluSq SINE Alu 1 290 -23 422 99 70 0 chr4 168784085 168784156 -15504506 + MADE1 DNA Mariner 1 76 -4 224 297 55 12 chr4 168785022 168785149 -15503513 + MIR SINE MIR 45 174 -63 1966 80 114 0 chr4 168785982 168786246 -15502416 - AluY SINE Alu -17 294 1 22 56 0 0 chr4 168786344 168786380 -15502282 + AT_rich Low_complexity Low_complexity 1 36 0 2019 154 0 6 chr4 168786400 168786712 -15501950 - AluSx SINE Alu -2 310 1 234 291 45 45 chr4 168786756 168786866 -15501796 + MIR SINE MIR 121 230 -32 322 240 66 33 chr4 168788025 168788146 -15500516 - L1ME LINE L1 -462 5659 5535 2295 96 0 0 chr4 168788569 168788851 -15499811 + AluSx SINE Alu 1 282 -30 243 0 0 0 chr4 168788854 168788881 -15499781 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 326 197 228 31 chr4 168789286 168789413 -15499249 - MER3 DNA MER1_type 0 209 58 535 105 147 11 chr4 168791561 168791656 -15497006 + FLAM_A SINE Alu 19 126 -16 274 310 40 0 chr4 168791709 168791809 -15496853 + MIR SINE MIR 126 229 -33 195 69 0 0 chr4 168794378 168794407 -15494255 + (A)n Simple_repeat Simple_repeat 1 29 0 2443 89 0 6 chr4 168795223 168795536 -15493126 - AluSq SINE Alu -2 311 1 1414 98 5 5 chr4 168796146 168796349 -15492313 - L1PA6 LINE L1 -13 6141 5939 289 266 0 13 chr4 168796366 168796445 -15492217 - MIR SINE MIR -117 145 68 231 261 188 68 chr4 168797216 168797423 -15491239 - MIR SINE MIR -11 251 20 2181 107 0 28 chr4 168797650 168797968 -15490694 + AluSc SINE Alu 1 309 0 180 0 0 0 chr4 168798541 168798561 -15490101 + (A)n Simple_repeat Simple_repeat 1 20 0 355 365 107 13 chr4 168800331 168800564 -15488098 + MIR SINE MIR 8 262 0 28 29 0 0 chr4 168800535 168800570 -15488092 + AT_rich Low_complexity Low_complexity 1 35 0 * 208 342 48 44 chr4 168800569 168800714 -15487948 - MIR SINE MIR -43 165 19 388 236 241 0 chr4 168800787 168800982 -15487680 - HsTC2 DNA Tc2 -3 1895 1654 306 218 57 65 chr4 168800978 168801102 -15487560 - HsTC2 DNA Tc2 -1765 133 11 * 606 275 6 6 chr4 168801313 168801473 -15487189 - MLT1J LTR MaLR -351 160 1 2032 109 0 39 chr4 168802742 168803053 -15485609 + AluSx SINE Alu 1 299 -13 1253 101 0 37 chr4 168803269 168803457 -15485205 + AluSc SINE Alu 127 307 -2 1662 248 110 34 chr4 168803990 168804778 -15483884 - L1ME1 LINE L1 -18 6148 5279 1945 123 7 7 chr4 168804787 168805096 -15483566 - AluSx SINE Alu -3 309 1 1596 151 0 64 chr4 168805098 168805409 -15483253 - AluJo SINE Alu -21 291 1 683 186 51 11 chr4 168805450 168805627 -15483035 - L1ME1 LINE L1 -1218 4928 4745 1224 140 0 0 chr4 168805632 168805811 -15482851 - AluJb SINE Alu -12 300 122 1064 139 0 91 chr4 168805828 168805904 -15482758 - AluJb SINE Alu -123 189 108 234 0 0 0 chr4 168805904 168805930 -15482732 + (TG)n Simple_repeat Simple_repeat 2 27 0 1064 139 0 91 chr4 168805930 168806061 -15482601 - AluJb SINE Alu -204 108 1 1682 234 101 26 chr4 168806061 168806822 -15481840 - L1ME1 LINE L1 -2873 3273 2456 406 104 194 0 chr4 168807037 168807104 -15481558 - MADE1 DNA Mariner 0 80 1 21 0 0 0 chr4 168807217 168807238 -15481424 + AT_rich Low_complexity Low_complexity 1 21 0 774 163 0 39 chr4 168807494 168807623 -15481039 + FLAM_C SINE Alu 1 124 -9 1838 112 53 3 chr4 168808074 168808359 -15480303 - AluSx SINE Alu -13 299 1 697 200 7 0 chr4 168809940 168810080 -15478582 + FAM SINE Alu 27 167 -18 21 0 0 0 chr4 168810127 168810148 -15478514 + AT_rich Low_complexity Low_complexity 1 21 0 546 189 256 33 chr4 168811766 168811946 -15476716 - MER49 LTR ERV1 -2 921 702 2359 187 60 21 chr4 168811953 168812482 -15476180 - MER49 LTR ERV1 -373 550 1 2440 66 0 3 chr4 168812508 168812813 -15475849 + AluSq SINE Alu 1 304 -9 819 149 149 11 chr4 168813302 168813403 -15475259 + MER7A DNA MER2_type 5 91 -2947 2200 95 7 0 chr4 168813403 168813699 -15474963 + AluSp SINE Alu 1 298 -15 819 149 149 11 chr4 168813699 168813771 -15474891 + MER7A DNA MER2_type 91 200 -146 417 20 0 0 chr4 168813777 168813827 -15474835 + (TG)n Simple_repeat Simple_repeat 2 51 0 381 203 0 0 chr4 168813958 168814027 -15474635 - AluJ/FLAM SINE Alu -233 69 1 325 156 16 16 chr4 168814027 168814071 -15474591 - AluS SINE Alu -257 44 1 1694 143 4 7 chr4 168814419 168814699 -15473963 - AluJb SINE Alu -20 292 14 353 287 90 16 chr4 168814713 168814835 -15473827 - L2 LINE L2 0 3272 3142 614 189 15 8 chr4 168814890 168815022 -15473640 + AluJo SINE Alu 1 133 -169 763 94 0 0 chr4 168815722 168815818 -15472844 - AluS SINE Alu -216 97 2 1684 112 43 29 chr4 168815824 168816102 -15472560 - Tigger3b DNA MER2_type -661 570 289 1118 174 11 0 chr4 168816098 168816276 -15472386 - Tigger3b DNA MER2_type -1050 181 2 * 250 299 285 0 chr4 168816276 168816420 -15472242 - L2 LINE L2 -285 3028 2844 965 221 62 15 chr4 168816432 168816723 -15471939 - L1MD3 LINE L1 -5 8034 7747 394 254 189 18 chr4 168816733 168816902 -15471760 + MLT1H LTR MaLR 97 294 -255 202 291 6 48 chr4 168818240 168818405 -15470257 + GA-rich Low_complexity Low_complexity 1 158 0 1669 172 7 3 chr4 168819639 168819935 -15468727 - AluJo SINE Alu -15 297 1 191 229 14 57 chr4 168820047 168820117 -15468545 - L2 LINE L2 -1 3271 3205 242 229 0 16 chr4 168820151 168820212 -15468450 + (TG)n Simple_repeat Simple_repeat 1 60 0 2344 143 3 5 chr4 168820212 168820583 -15468079 - L1MC1 LINE L1 -363 6039 5670 973 170 0 0 chr4 168820585 168820750 -15467912 + AluJo SINE Alu 136 300 -12 1304 173 29 65 chr4 168820781 168821087 -15467575 + AluJo SINE Alu 1 295 -17 2425 191 27 14 chr4 168821208 168822105 -15466557 - L1MC1 LINE L1 -743 5472 4527 858 216 0 12 chr4 168822117 168822279 -15466383 - FRAM SINE Alu -2 164 5 1033 112 7 0 chr4 168822299 168822442 -15466220 - AluSg/x SINE Alu -24 288 145 2110 124 0 6 chr4 168822476 168822790 -15465872 - AluSx SINE Alu 0 312 1 524 276 50 26 chr4 168822817 168823198 -15465464 - L1MC1 LINE L1 -3525 2690 2301 1003 84 0 0 chr4 168823214 168823345 -15465317 - AluY SINE Alu -180 131 1 323 350 65 23 chr4 168823358 168823575 -15465087 - L1MC1 LINE L1 -4050 2346 2121 2415 84 0 0 chr4 168823701 168824011 -15464651 - AluY SINE Alu -1 310 1 368 264 35 13 chr4 168824111 168824320 -15464342 - L1MDa LINE L1 -681 1667 428 300 313 76 42 chr4 168824369 168824513 -15464149 - HAL1 LINE L1 -1026 1481 1333 2072 86 28 3 chr4 168824513 168824804 -15463858 - AluSc SINE Alu -11 298 1 2099 118 0 3 chr4 168824804 168825109 -15463553 - AluSq SINE Alu -9 304 1 1248 163 4 36 chr4 168825945 168826196 -15462466 + AluY SINE Alu 65 307 -4 381 260 236 0 chr4 168826398 168826525 -15462137 - MER5B DNA MER1_type -12 166 10 26 30 0 0 chr4 168826752 168826785 -15461877 + AT_rich Low_complexity Low_complexity 1 33 0 1744 96 8 0 chr4 168826785 168827024 -15461638 - AluSq SINE Alu -21 292 52 2113 53 36 4 chr4 168827053 168827334 -15461328 - AluY SINE Alu -21 290 1 2564 39 0 3 chr4 168827339 168827646 -15461016 - AluY SINE Alu -5 306 1 2026 192 45 7 chr4 168827651 168828094 -15460568 - L1MB7 LINE L1 0 6184 5725 398 256 38 75 chr4 168828301 168828345 -15460317 - MER5B DNA MER1_type -19 159 115 2250 75 0 3 chr4 168828345 168828638 -15460024 + AluY SINE Alu 1 292 -19 398 256 38 75 chr4 168828638 168828753 -15459909 - MER5B DNA MER1_type -63 115 6 1688 84 0 0 chr4 168829196 168829410 -15459252 - AluSx SINE Alu -98 214 1 287 146 0 0 chr4 168829410 168829451 -15459211 + MSTA LTR MaLR 388 428 0 24 0 0 0 chr4 168829693 168829717 -15458945 + AT_rich Low_complexity Low_complexity 1 24 0 2193 68 14 7 chr4 168829958 168830088 -15458574 + AluY SINE Alu 1 129 -182 378 0 0 0 chr4 168830088 168830130 -15458532 + (TAA)n Simple_repeat Simple_repeat 2 43 0 2193 68 14 7 chr4 168830130 168830292 -15458370 + AluY SINE Alu 129 295 -16 278 288 93 25 chr4 168830452 168830570 -15458092 - L2 LINE L2 0 3272 3147 1171 177 50 55 chr4 168830706 168831141 -15457521 + MER52A LTR ERV1 660 1232 -523 289 284 0 0 chr4 168831241 168831308 -15457354 + MER52A LTR ERV1 1280 1346 -409 2906 154 32 70 chr4 168831412 168831982 -15456680 + MER52A LTR ERV1 1208 1755 0 503 237 57 34 chr4 168832109 168832286 -15456376 - MIR SINE MIR -54 208 28 508 270 185 31 chr4 168832942 168833031 -15455631 + L2 LINE L2 3015 3089 -224 1772 162 10 3 chr4 168833031 168833327 -15455335 - AluJo SINE Alu -14 298 1 508 270 185 31 chr4 168833327 168833496 -15455166 + L2 LINE L2 3089 3313 0 270 0 0 0 chr4 168834170 168834200 -15454462 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 217 269 121 57 chr4 168835205 168835346 -15453316 + L2 LINE L2 2243 2392 -922 1749 157 112 0 chr4 168837132 168837445 -15451217 + MER7A DNA MER2_type 1 346 0 183 205 0 0 chr4 168839381 168839420 -15449242 + GA-rich Low_complexity Low_complexity 6 44 0 1326 224 14 14 chr4 168839610 168839900 -15448762 + AluJo SINE Alu 1 290 -12 2169 102 0 0 chr4 168839906 168840210 -15448452 + AluY SINE Alu 1 304 -7 2033 123 0 7 chr4 168840216 168840517 -15448145 + AluSx SINE Alu 1 299 -13 2767 236 104 39 chr4 168840599 168841272 -15447390 + L1M4 LINE L1 -26 602 -5711 1572 96 5 0 chr4 168841272 168841491 -15447171 - AluSc SINE Alu -7 302 83 2767 236 104 39 chr4 168841491 168842040 -15446622 + L1M4 LINE L1 602 1788 -4525 477 201 104 8 chr4 168842107 168842241 -15446421 + L1M4c LINE L1 1529 1675 -4709 568 307 68 0 chr4 168842413 168842618 -15446044 + MIR SINE MIR 13 231 -31 1667 155 13 26 chr4 168843033 168843343 -15445319 - AluJb SINE Alu -6 306 1 759 239 55 41 chr4 168843471 168843764 -15444898 - L1ME3A LINE L1 -9 6161 5865 398 183 92 6 chr4 168844222 168844386 -15444276 + (CA)n Simple_repeat Simple_repeat 1 178 0 304 164 4 97 chr4 168844438 168844660 -15444002 + (CACAA)n Simple_repeat Simple_repeat 5 202 0 641 170 10 0 chr4 168845143 168845243 -15443419 - FAM SINE Alu -62 123 23 233 187 0 11 chr4 168845243 168845334 -15443328 + (TA)n Simple_repeat Simple_repeat 1 90 0 307 282 26 34 chr4 168845370 168845487 -15443175 + L1MC4 LINE L1 6604 6719 -1323 208 167 0 24 chr4 168845491 168845575 -15443087 + (TA)n Simple_repeat Simple_repeat 1 82 0 320 245 21 53 chr4 168845625 168845719 -15442943 + L1MC4 LINE L1 6615 6705 -1337 303 188 0 104 chr4 168845699 168845795 -15442867 + L1MC3 LINE L1 6561 6646 -1139 * 366 336 0 0 chr4 168845898 168846014 -15442648 + C-rich Low_complexity Low_complexity 1 116 0 865 161 43 0 chr4 168846246 168846408 -15442254 - AluSg/x SINE Alu -56 256 88 556 178 341 0 chr4 168846406 168846541 -15442121 - AluJb SINE Alu -130 182 2 * 738 213 87 47 chr4 168847729 168848006 -15440656 - Charlie1 DNA MER1_type -50 2711 2424 262 215 0 62 chr4 168848018 168848083 -15440579 - Charlie1 DNA MER1_type -2699 62 2 1474 163 31 17 chr4 168849726 168850020 -15438642 - AluJo SINE Alu -14 298 1 2328 60 10 17 chr4 168852920 168853219 -15435443 + AluSx SINE Alu 1 297 -15 216 323 48 24 chr4 168854169 168854293 -15434369 + L2 LINE L2 2203 2329 -985 234 326 0 74 chr4 168854962 168855152 -15433510 + C-rich Low_complexity Low_complexity 1 176 0 805 273 194 2 chr4 168855382 168855800 -15432862 - L1MC4 LINE L1 -426 7616 7119 543 154 0 0 chr4 168855859 168855937 -15432725 - AluJ/FRAM SINE Alu -17 295 218 512 228 41 0 chr4 168855959 168856082 -15432580 - L1MC4 LINE L1 -982 7060 6933 195 286 149 0 chr4 168856087 168856248 -15432414 - L2 LINE L2 -1897 1417 1233 2031 81 4 0 chr4 168857298 168857587 -15431075 - AluSp SINE Alu 0 313 40 1339 188 98 0 chr4 168857769 168857912 -15430750 - AluJb SINE Alu -20 292 164 261 0 0 0 chr4 168857912 168857941 -15430721 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1339 188 98 0 chr4 168857941 168858063 -15430599 - AluJb SINE Alu -148 164 1 1061 127 7 0 chr4 168859528 168859678 -15428984 - FRAM SINE Alu -16 160 10 831 222 54 0 chr4 168859721 168859906 -15428756 - MER3 DNA MER1_type 0 209 15 917 190 55 58 chr4 168860713 168860987 -15427675 + MER33 DNA MER1_type 29 301 -23 195 289 96 0 chr4 168861188 168861271 -15427391 - MIR SINE MIR -139 123 33 338 269 94 34 chr4 168861309 168861458 -15427204 + MIR SINE MIR 53 210 -52 214 211 53 66 chr4 168862198 168862274 -15426388 + MIR3 SINE MIR 105 179 -29 25 0 0 0 chr4 168863521 168863546 -15425116 + AT_rich Low_complexity Low_complexity 1 25 0 1318 210 14 20 chr4 168864146 168864330 -15424332 + MER33 DNA MER1_type 32 215 -2370 2051 145 62 6 chr4 168864330 168864655 -15424007 - MER2 DNA MER2_type -1 343 1 1318 210 14 20 chr4 168864655 168864765 -15423897 + MER33 DNA MER1_type 215 324 0 1003 74 0 22 chr4 168865233 168865368 -15423294 + AluSq/x SINE Alu 1 132 -180 407 251 97 60 chr4 168865446 168865796 -15422866 - L1MC5 LINE L1 -170 7791 7429 24 32 0 0 chr4 168867099 168867130 -15421532 + AT_rich Low_complexity Low_complexity 1 31 0 672 184 48 0 chr4 168868224 168868349 -15420313 + L1MB7 LINE L1 6044 6174 -10 26 0 0 0 chr4 168869208 168869234 -15419428 + AT_rich Low_complexity Low_complexity 1 26 0 467 255 80 37 chr4 168870419 168870607 -15418055 + MIR SINE MIR 4 199 -63 1583 139 56 73 chr4 168870936 168871238 -15417424 + AluJb SINE Alu 7 303 -9 535 126 0 78 chr4 168871340 168871372 -15417290 - FRAM SINE Alu -141 171 138 234 0 0 0 chr4 168871372 168871398 -15417264 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 535 126 0 78 chr4 168871398 168871468 -15417194 - FRAM SINE Alu -174 138 77 761 122 0 52 chr4 168871470 168871585 -15417077 + AluJb SINE Alu 190 298 -14 560 242 75 19 chr4 168871586 168871747 -15416915 - MER58 DNA MER1_type -2244 176 7 1023 216 71 46 chr4 168871990 168872273 -15416389 + AluJo SINE Alu 3 292 -10 26 30 0 0 chr4 168872715 168872748 -15415914 + AT_rich Low_complexity Low_complexity 1 33 0 252 221 0 0 chr4 168872820 168872897 -15415765 + T-rich Low_complexity Low_complexity 1 77 0 912 260 107 70 chr4 168873748 168874336 -15414326 - L1MC5 LINE L1 -167 7794 7185 266 238 95 19 chr4 168874908 168875013 -15413649 - L1ME4a LINE L1 -3 6118 6006 1874 166 0 10 chr4 168875789 168876090 -15412572 + AluJb SINE Alu 1 298 -14 271 241 218 41 chr4 168876574 168876744 -15411918 - LTR16A LTR ERVL -18 432 233 2543 71 3 0 chr4 168877582 168877892 -15410770 + AluY SINE Alu 1 311 0 216 0 0 0 chr4 168877906 168877930 -15410732 + (TA)n Simple_repeat Simple_repeat 1 24 0 1615 160 52 0 chr4 168879671 168879939 -15408723 - AluJb SINE Alu -30 282 1 413 228 259 5 chr4 168880080 168880277 -15408385 - L1M4 LINE L1 -1261 4885 4639 912 145 0 0 chr4 168880281 168880405 -15408257 + FLAM_C SINE Alu 2 125 -8 2340 95 0 19 chr4 168880424 168880740 -15407922 - AluSx SINE Alu -2 310 1 5281 70 11 0 chr4 168880821 168881461 -15407201 + L1PA11 LINE L1 5526 6172 -2 921 209 88 7 chr4 168881527 168881800 -15406862 - L1MC5 LINE L1 -26 7935 7641 777 182 0 0 chr4 168883153 168883285 -15405377 - FLAM_A SINE Alu -1 132 1 202 213 164 0 chr4 168883389 168883450 -15405212 + MIR SINE MIR 84 154 -108 242 254 206 48 chr4 168884048 168884402 -15404260 - L2 LINE L2 -1321 1993 1584 23 0 0 0 chr4 168885059 168885082 -15403580 + AT_rich Low_complexity Low_complexity 1 23 0 318 154 39 0 chr4 168887800 168887852 -15400810 + MIR3 SINE MIR 105 158 -50 184 377 16 0 chr4 168887891 168887952 -15400710 + L2 LINE L2 3208 3269 -44 1372 186 100 15 chr4 168888187 168888521 -15400141 - L1MA8 LINE L1 -1 6290 5954 2282 112 51 36 chr4 168888816 168889172 -15399490 - THE1B LTR MaLR 0 364 4 1799 153 16 29 chr4 168889199 168889513 -15399149 + AluJo SINE Alu 1 310 -2 2217 62 45 3 chr4 168889797 168890085 -15398577 - AluY SINE Alu -11 300 1 2227 122 3 3 chr4 168890555 168890867 -15397795 - AluSx SINE Alu 0 312 1 617 245 101 6 chr4 168890867 168891026 -15397636 - FRAM SINE Alu -9 167 1 391 309 0 10 chr4 168891183 168891280 -15397382 + L2 LINE L2 3204 3299 -14 5959 29 1 0 chr4 168891745 168892391 -15396271 - SVA Other Other 0 1386 740 967 205 112 32 chr4 168892525 168892803 -15395859 + MER33 DNA MER1_type 17 316 -8 2025 125 30 16 chr4 168896523 168896826 -15391836 - AluSx SINE Alu -5 307 1 21 0 0 0 chr4 168896966 168896987 -15391675 + AT_rich Low_complexity Low_complexity 1 21 0 2136 94 28 3 chr4 168899568 168899854 -15388808 + AluSg SINE Alu 1 293 -17 716 175 60 134 chr4 168900395 168900612 -15388050 + MER58A DNA MER1_type 19 219 -5 329 236 142 0 chr4 168900733 168900860 -15387802 - L1MEc LINE L1 -3714 2501 2357 463 216 93 46 chr4 168901413 168901672 -15386990 - L1MEc LINE L1 -4122 2274 2004 1615 140 70 42 chr4 168901929 168902215 -15386447 + AluJo SINE Alu 1 294 -18 619 207 70 61 chr4 168902490 168902703 -15385959 + MER20 DNA MER1_type 1 215 -4 1778 172 16 7 chr4 168902857 168903160 -15385502 - AluJo SINE Alu -2 310 5 571 46 0 0 chr4 168906459 168906524 -15382138 + AluSq/x SINE Alu 72 136 -176 1277 114 0 70 chr4 168906524 168906661 -15382001 + AluSx SINE Alu 1 121 -191 2185 113 0 3 chr4 168906661 168906954 -15381708 + AluSx SINE Alu 21 312 0 1277 114 0 70 chr4 168906954 168907017 -15381645 + AluSx SINE Alu 121 187 -125 4630 172 100 71 chr4 168907019 168907350 -15381312 - L1MCa LINE L1 -2891 3535 3215 1423 197 57 23 chr4 168907350 168907649 -15381013 - AluJb SINE Alu -3 309 1 4630 172 100 71 chr4 168907649 168908330 -15380332 - L1MCa LINE L1 -3211 3215 2556 649 179 14 79 chr4 168908330 168908470 -15380192 - FLAM_A SINE Alu -2 131 1 4630 172 100 71 chr4 168908470 168909366 -15379296 - L1MCa LINE L1 -3870 2556 1554 1636 167 47 4 chr4 168909366 168909642 -15379020 - AluSx SINE Alu -24 288 1 4630 172 100 71 chr4 168909642 168910010 -15378652 - L1MCa LINE L1 -4872 1554 1198 182 61 0 30 chr4 168910099 168910132 -15378530 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1989 163 0 0 chr4 168910497 168910792 -15377870 + AluJb SINE Alu 1 295 -17 540 261 64 8 chr4 168911098 168911332 -15377330 - L1M4 LINE L1 -3515 2631 2385 1647 191 31 0 chr4 168911365 168911658 -15377004 + AluJo SINE Alu 1 302 -10 2299 97 0 3 chr4 168911743 168912043 -15376619 - AluSx SINE Alu -13 299 1 304 239 53 26 chr4 168912083 168912196 -15376466 - LTR41 LTR ERVL -87 686 571 2251 85 0 0 chr4 168912686 168912968 -15375694 + AluY SINE Alu 29 310 -1 2483 93 0 0 chr4 168913203 168913514 -15375148 + AluSp SINE Alu 1 311 -2 27 62 0 0 chr4 168914354 168914402 -15374260 + AT_rich Low_complexity Low_complexity 1 48 0 355 246 109 14 chr4 168915142 168915280 -15373382 + MIR SINE MIR 4 154 -108 1417 119 36 212 chr4 168915351 168915770 -15372892 - MER2 DNA MER2_type 0 345 1 1689 162 39 7 chr4 168915864 168916148 -15372514 + AluJb SINE Alu 1 293 -19 708 200 79 5 chr4 168916931 168917121 -15371541 + MER33 DNA MER1_type 35 238 -86 292 246 0 0 chr4 168917154 168917219 -15371443 + MER33 DNA MER1_type 238 302 -22 2282 101 3 0 chr4 169017481 169017778 -15270884 + AluSq SINE Alu 1 298 -15 184 137 20 118 chr4 169019193 169019244 -15269418 - L3 LINE CR1 -698 879 834 4287 178 22 18 chr4 169019663 169020568 -15268094 - L1MA9 LINE L1 0 6312 5404 1317 219 101 19 chr4 169020679 169021044 -15267618 + MSTD LTR MaLR 1 395 -1 875 196 48 0 chr4 169021375 169021543 -15267119 - THE1B LTR MaLR -173 191 16 6240 135 36 6 chr4 169021552 169022532 -15266130 - THE1B-int LTR MaLR -140 1440 432 333 141 0 0 chr4 169022640 169022704 -15265958 + L1MA5A LINE L1 6234 6297 0 778 203 0 0 chr4 169022765 169022918 -15265744 + L1P LINE L1 4931 5083 -1063 1279 123 20 0 chr4 169022918 169023117 -15265545 + L1PA13 LINE L1 5953 6160 -3 23 0 0 0 chr4 169023224 169023247 -15265415 + AT_rich Low_complexity Low_complexity 1 23 0 5769 106 11 5 chr4 169023830 169025338 -15263324 - L1PA13 LINE L1 -11 6152 4662 293 233 17 0 chr4 169025584 169025644 -15263018 + L2 LINE L2 3169 3229 -43 213 370 118 9 chr4 169025675 169025886 -15262776 + L2 LINE L2 1867 2100 -1214 447 19 0 0 chr4 169026200 169026252 -15262410 + (CA)n Simple_repeat Simple_repeat 2 53 0 1067 261 23 54 chr4 169027324 169027715 -15260947 - MLT2C1 LTR ERVL -7 390 12 201 421 29 0 chr4 169028620 169028760 -15259902 - L2 LINE L2 -527 2787 2644 424 328 73 82 chr4 169029145 169029813 -15258849 - L2 LINE L2 -831 2483 1822 23 0 0 0 chr4 169030283 169030306 -15258356 + AT_rich Low_complexity Low_complexity 1 23 0 2615 43 0 0 chr4 169031784 169032089 -15256573 + AluY SINE Alu 2 306 -5 180 0 0 0 chr4 169032136 169032156 -15256506 + (A)n Simple_repeat Simple_repeat 1 20 0 419 264 39 19 chr4 169032156 169032338 -15256324 - MER101 LTR ERV1 -51 519 234 264 329 20 13 chr4 169032967 169033116 -15255546 + GA-rich Low_complexity Low_complexity 2 151 0 1007 99 0 0 chr4 169034207 169034338 -15254324 - AluSg SINE Alu -179 131 1 371 331 79 19 chr4 169034459 169034850 -15253812 + HAL1b LINE L1 421 851 -497 180 77 0 0 chr4 169035037 169035063 -15253599 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 311 331 66 12 chr4 169035263 169035429 -15253233 + L1 LINE L1 2267 2441 -3705 6038 253 61 42 chr4 169035586 169037058 -15251604 - L1MC/D LINE L1 -580 6056 4614 2037 125 4 0 chr4 169037058 169037381 -15251281 - AluSg SINE Alu 0 326 3 6038 253 61 42 chr4 169037381 169039202 -15249460 - L1MC/D LINE L1 -2022 4614 2693 670 234 60 39 chr4 169039202 169039609 -15249053 - MLT1C LTR MaLR 0 467 6 4254 172 62 50 chr4 169039615 169040821 -15247841 - L1MDa LINE L1 -3843 2697 1479 485 169 0 0 chr4 169040859 169040942 -15247720 - MER33 DNA MER1_type -218 106 24 1386 270 31 9 chr4 169041286 169041608 -15247054 + MER45B DNA AcHobo 1 329 -711 811 204 62 27 chr4 169041609 169041834 -15246828 + MER45B DNA AcHobo 608 840 -200 1739 191 0 0 chr4 169041849 169042132 -15246530 - AluSx SINE Alu -27 285 3 35 0 0 0 chr4 169042140 169042175 -15246487 + AT_rich Low_complexity Low_complexity 1 35 0 1960 152 7 0 chr4 169042553 169042863 -15245799 - AluSx SINE Alu 0 312 1 25 51 0 0 chr4 169043116 169043155 -15245507 + AT_rich Low_complexity Low_complexity 1 39 0 530 232 52 36 chr4 169043155 169043349 -15245313 + MER45B DNA AcHobo 832 1028 -12 1468 308 86 47 chr4 169043528 169043903 -15244759 + HERV16 LTR ERVL 1899 2258 -2738 357 24 0 0 chr4 169043903 169043945 -15244717 + (TG)n Simple_repeat Simple_repeat 1 42 0 1468 308 86 47 chr4 169043945 169044602 -15244060 + HERV16 LTR ERVL 2258 2972 -2024 2057 33 0 0 chr4 169044663 169044904 -15243758 - L1PA3 LINE L1 -55 6100 5860 252 68 23 0 chr4 169044901 169044945 -15243717 + L1PA4 LINE L1 6109 6153 -2 * 221 250 36 12 chr4 169045811 169045895 -15242767 + T-rich Low_complexity Low_complexity 4 89 0 21 0 0 0 chr4 169047049 169047070 -15241592 + AT_rich Low_complexity Low_complexity 1 21 0 256 410 44 43 chr4 169047560 169048087 -15240575 - L2 LINE L2 -2 3270 2723 2003 136 39 30 chr4 169048485 169048846 -15239816 - THE1B LTR MaLR 0 364 1 203 314 172 10 chr4 169048853 169049057 -15239605 - L2 LINE L2 -1099 2215 1979 312 286 27 43 chr4 169049088 169049273 -15239389 + L1MC5 LINE L1 7604 7785 -176 21 36 0 0 chr4 169049273 169049301 -15239361 + AT_rich Low_complexity Low_complexity 1 28 0 433 360 7 0 chr4 169051024 169051177 -15237485 + MER63A DNA MER1_type 57 210 0 2008 112 7 0 chr4 169051455 169051757 -15236905 + AluSx SINE Alu 3 306 0 1446 246 15 12 chr4 169051781 169052187 -15236475 - L1MB8 LINE L1 -23 6155 5749 1422 182 32 60 chr4 169052337 169052502 -15236160 - L1MB8 LINE L1 -451 5727 5576 2029 102 58 0 chr4 169052502 169052795 -15235867 + AluSq SINE Alu 1 310 -3 1422 182 32 60 chr4 169052795 169052976 -15235686 - L1MB8 LINE L1 -602 5576 5391 21 57 0 0 chr4 169053004 169053039 -15235623 + AT_rich Low_complexity Low_complexity 1 35 0 302 276 9 19 chr4 169053181 169053286 -15235376 + (CATATA)n Simple_repeat Simple_repeat 1 104 0 340 339 62 38 chr4 169053292 169053894 -15234768 - L1MC4a LINE L1 -785 5574 5303 520 301 74 80 chr4 169054098 169054763 -15233899 - L1MC4a LINE L1 -1103 5043 4383 234 234 0 0 chr4 169055288 169055335 -15233327 - L2 LINE L2 0 3313 3267 512 301 39 15 chr4 169055418 169055621 -15233041 - L2 LINE L2 -170 3143 2936 748 246 60 6 chr4 169057077 169057260 -15231402 + MER58A DNA MER1_type 2 194 -30 2084 123 0 0 chr4 169057941 169058248 -15230414 + AluSx SINE Alu 1 307 0 382 308 162 71 chr4 169061415 169062529 -15226133 + L2 LINE L2 1692 2906 -408 189 406 39 8 chr4 169062705 169062833 -15225829 + L2 LINE L2 2921 3052 -220 305 390 7 21 chr4 169062956 169063097 -15225565 + L2 LINE L2 3134 3272 0 25 51 0 0 chr4 169063940 169063979 -15224683 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr4 169064092 169064114 -15224548 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr4 169064378 169064401 -15224261 + (CA)n Simple_repeat Simple_repeat 2 24 0 23 54 0 0 chr4 169064955 169064992 -15223670 + AT_rich Low_complexity Low_complexity 1 37 0 792 212 70 148 chr4 169065514 169066013 -15222649 - MER67A LTR ERV1 0 543 84 401 155 60 0 chr4 169066068 169066152 -15222510 - MER67A LTR ERV1 -443 100 12 2325 89 103 0 chr4 169066431 169066790 -15221872 - THE1B-int LTR MaLR -1184 396 1 2101 145 58 0 chr4 169066790 169067134 -15221528 - THE1B LTR MaLR 0 364 1 13290 162 30 5 chr4 169067454 169069788 -15218874 + Tigger1 DNA MER2_type 25 2417 -1 2147 130 0 0 chr4 169070301 169070594 -15218068 + AluSx SINE Alu 5 297 -15 3627 122 26 9 chr4 169070617 169070982 -15217680 + LTR19B LTR ERV1 1 381 -199 221 0 35 0 chr4 169070982 169071011 -15217651 + (CAA)n Simple_repeat Simple_repeat 1 30 0 3627 122 26 9 chr4 169071011 169071213 -15217449 + LTR19B LTR ERV1 381 578 -2 23 0 0 0 chr4 169071465 169071488 -15217174 + AT_rich Low_complexity Low_complexity 1 23 0 1187 303 80 97 chr4 169071753 169072658 -15216004 + L2 LINE L2 876 1736 -1578 1425 207 33 3 chr4 169072658 169072958 -15215704 - L1PA16 LINE L1 -13 6153 5845 1187 303 80 97 chr4 169072958 169073850 -15214812 + L2 LINE L2 1736 2642 -672 2963 16 98 0 chr4 169073892 169074260 -15214402 - L1PA2 LINE L1 -2 6153 5750 28 29 0 0 chr4 169074352 169074387 -15214275 + AT_rich Low_complexity Low_complexity 1 35 0 364 279 128 34 chr4 169074417 169074596 -15214066 + MIR SINE MIR 66 261 -1 593 187 155 16 chr4 169074609 169074796 -15213866 + Tigger2 DNA MER2_type 1 213 -2505 574 263 20 0 chr4 169074793 169074945 -15213717 + Tigger2 DNA MER2_type 2564 2718 0 * 182 36 0 36 chr4 169075015 169075043 -15213619 + (TATATG)n Simple_repeat Simple_repeat 2 28 0 1522 171 52 55 chr4 169075046 169075391 -15213271 - MER2 DNA MER2_type 0 344 1 262 304 38 32 chr4 169075708 169075866 -15212796 + MLT1J LTR MaLR 113 271 -240 21 0 0 0 chr4 169075934 169075955 -15212707 + AT_rich Low_complexity Low_complexity 1 21 0 303 282 66 44 chr4 169076033 169076214 -15212448 - L1ME3A LINE L1 -223 5947 5763 21 0 0 0 chr4 169076471 169076492 -15212170 + AT_rich Low_complexity Low_complexity 1 21 0 264 337 90 0 chr4 169076745 169076923 -15211739 - L1MEc LINE L1 -2583 3632 3439 21 0 0 0 chr4 169076975 169076996 -15211666 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 169077105 169077128 -15211534 + AT_rich Low_complexity Low_complexity 1 23 0 185 254 109 18 chr4 169077136 169077191 -15211471 - L2 LINE L2 -1883 1431 1372 532 302 16 5 chr4 169077309 169077498 -15211164 - L1ME3 LINE L1 0 6162 5972 498 275 58 29 chr4 169078411 169078651 -15210011 - L1MEc LINE L1 -4746 1650 1404 180 111 0 0 chr4 169078665 169078692 -15209970 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 487 342 91 50 chr4 169078698 169079333 -15209329 - L1MEc LINE L1 -5013 1192 532 2003 144 21 24 chr4 169079454 169079830 -15208832 - THE1C LTR MaLR 0 375 1 361 312 9 0 chr4 169080609 169080718 -15207944 + Charlie2 DNA MER1_type 32 141 -2721 1715 194 0 0 chr4 169080718 169081017 -15207645 - AluJo SINE Alu -13 299 1 361 276 98 52 chr4 169081026 169081312 -15207350 + L1MC4a LINE L1 5640 5938 -1870 4563 128 36 15 chr4 169081728 169082526 -15206136 + L1MA2 LINE L1 5490 6304 0 783 288 101 28 chr4 169082570 169082966 -15205696 - MER90 LTR ERV1 -95 480 56 1241 291 32 46 chr4 169083211 169083737 -15204925 + LTR40a LTR ERVL 1 519 0 3552 108 9 20 chr4 169084232 169084785 -15203877 + L1PA13 LINE L1 5612 6158 -5 275 285 64 58 chr4 169085842 169086014 -15202648 - MER110-int LTR ERV1 -2187 2460 2288 675 302 32 26 chr4 169086203 169086643 -15202019 - L1MC5 LINE L1 -949 6859 6456 661 294 67 75 chr4 169086731 169086861 -15201801 + MER90 LTR ERV1 36 165 -410 2106 116 0 7 chr4 169086861 169087164 -15201498 - AluSx SINE Alu -11 301 1 661 294 67 75 chr4 169087164 169087570 -15201092 + MER90 LTR ERV1 165 568 -7 2011 109 11 3 chr4 169087835 169088144 -15200518 + AluSx SINE Alu 1 311 0 24 0 0 0 chr4 169088605 169088629 -15200033 + AT_rich Low_complexity Low_complexity 1 24 0 21 89 0 0 chr4 169089919 169089975 -15198687 + AT_rich Low_complexity Low_complexity 1 56 0 28 0 0 0 chr4 169091770 169091798 -15196864 + AT_rich Low_complexity Low_complexity 1 28 0 2233 86 0 13 chr4 169091876 169092179 -15196483 - AluSp SINE Alu -14 299 1 537 56 0 0 chr4 169092365 169092436 -15196226 - Alu SINE Alu -10 299 229 195 42 0 0 chr4 169092715 169092739 -15195923 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1556 74 22 35 chr4 169092739 169092970 -15195692 - L1PA8A LINE L1 -10 6121 5894 339 291 197 49 chr4 169092973 169093399 -15195263 + L2 LINE L2 2825 3313 0 294 324 24 0 chr4 169094805 169094975 -15193687 + (TA)n Simple_repeat Simple_repeat 2 175 0 1006 160 14 9 chr4 169094996 169095208 -15193454 + L1MB3 LINE L1 5971 6183 0 1174 279 60 36 chr4 169095212 169096035 -15192627 + L1ME LINE L1 4902 5737 -433 2181 98 10 0 chr4 169096295 169096591 -15192071 - AluSg SINE Alu -11 299 1 2010 169 52 37 chr4 169096665 169097209 -15191453 - MLT2A2 LTR ERVL 0 554 1 189 121 0 0 chr4 169097268 169097301 -15191361 + (GA)n Simple_repeat Simple_repeat 2 34 0 233 310 28 0 chr4 169097341 169097412 -15191250 + GA-rich Low_complexity Low_complexity 3 75 0 239 235 0 29 chr4 169097465 169097533 -15191129 + MLT1K LTR MaLR 498 563 -25 2012 136 3 3 chr4 169098154 169098463 -15190199 + AluSx SINE Alu 1 309 -3 198 0 0 0 chr4 169099065 169099087 -15189575 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 823 294 132 7 chr4 169099590 169100022 -15188640 - LTR33 LTR ERVL -9 512 27 2356 70 0 0 chr4 169100022 169100320 -15188342 + AluSg SINE Alu 1 298 -12 416 19 19 0 chr4 169101421 169101474 -15187188 + (CA)n Simple_repeat Simple_repeat 2 55 0 21 0 0 0 chr4 169102288 169102309 -15186353 + AT_rich Low_complexity Low_complexity 1 21 0 1363 189 35 35 chr4 169102423 169102709 -15185953 - AluJo SINE Alu -26 286 1 2419 72 0 0 chr4 169102993 169103297 -15185365 - AluSc SINE Alu -5 304 1 21 0 0 0 chr4 169103765 169103786 -15184876 + AT_rich Low_complexity Low_complexity 1 21 0 651 139 10 0 chr4 169104479 169104685 -15183977 + AluSp/q SINE Alu 190 396 0 211 167 15 76 chr4 169104774 169104840 -15183822 - MIR SINE MIR -1 261 200 327 310 99 21 chr4 169105005 169105247 -15183415 + L1M4 LINE L1 5287 5547 -627 250 242 10 10 chr4 169105652 169105751 -15182911 + CT-rich Low_complexity Low_complexity 1 99 0 27 0 0 0 chr4 169106014 169106041 -15182621 + AT_rich Low_complexity Low_complexity 1 27 0 334 92 15 15 chr4 169106096 169106161 -15182501 + (CA)n Simple_repeat Simple_repeat 2 66 0 367 248 27 0 chr4 169106863 169106958 -15181704 - MLT1J1 LTR MaLR -285 161 64 1800 191 63 139 chr4 169106962 169107772 -15180890 + L1MB8 LINE L1 5417 6164 -14 22 56 0 0 chr4 169108205 169108241 -15180421 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr4 169108257 169108279 -15180383 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr4 169109150 169109192 -15179470 + AT_rich Low_complexity Low_complexity 1 42 0 317 264 0 0 chr4 169109367 169109473 -15179189 + (TA)n Simple_repeat Simple_repeat 1 106 0 22 0 0 0 chr4 169109810 169109832 -15178830 + AT_rich Low_complexity Low_complexity 1 22 0 621 296 94 38 chr4 169110036 169110408 -15178254 - LTR67 LTR ERVL -57 500 108 21 57 0 0 chr4 169110634 169110669 -15177993 + AT_rich Low_complexity Low_complexity 1 35 0 1094 256 79 41 chr4 169110940 169111382 -15177280 + MLT1C LTR MaLR 9 467 0 705 226 0 31 chr4 169113840 169113999 -15174663 - MER20 DNA MER1_type -1 218 65 380 222 80 129 chr4 169114003 169114363 -15174299 + MER34C LTR ERV1 17 365 -200 402 189 88 54 chr4 169114449 169114597 -15174065 + MER34 LTR ERV1 390 542 0 247 319 14 0 chr4 169114600 169114669 -15173993 - MER20 DNA MER1_type -149 70 1 193 345 0 0 chr4 169115111 169115166 -15173496 + L2 LINE L2 3250 3304 -9 2040 113 0 7 chr4 169116079 169116395 -15172267 + AluSc SINE Alu 1 314 0 674 165 0 0 chr4 169118401 169118516 -15170146 + THE1C LTR MaLR 253 367 -8 339 317 62 50 chr4 169118623 169118882 -15169780 + MIR SINE MIR 1 262 0 36 23 0 0 chr4 169118968 169119011 -15169651 + AT_rich Low_complexity Low_complexity 1 43 0 24 32 0 0 chr4 169119181 169119212 -15169450 + AT_rich Low_complexity Low_complexity 1 31 0 350 374 123 27 chr4 169121008 169121454 -15167208 - L2 LINE L2 -19 3294 2806 352 330 73 55 chr4 169121531 169121861 -15166801 - L2 LINE L2 -700 2614 2279 2027 144 0 3 chr4 169122300 169122613 -15166049 - AluSx SINE Alu 0 312 1 4476 188 44 33 chr4 169122647 169124642 -15164020 - L1PA16 LINE L1 -23 6143 4130 2141 113 10 0 chr4 169124910 169125211 -15163451 - AluSq SINE Alu -9 304 1 290 105 0 18 chr4 169125635 169125692 -15162970 + (TTTTTG)n Simple_repeat Simple_repeat 2 57 0 26 88 0 0 chr4 169126564 169126632 -15162030 + AT_rich Low_complexity Low_complexity 1 68 0 2317 75 10 10 chr4 169127548 169127856 -15160806 + AluSg SINE Alu 1 308 -2 2482 254 25 6 chr4 169128069 169128710 -15159952 - MER82 DNA MER2_type 0 653 1 1750 148 19 86 chr4 169128718 169128886 -15159776 - MLT1B LTR MaLR 0 390 212 2356 101 0 0 chr4 169128886 169129192 -15159470 - AluSg SINE Alu 0 310 5 1750 148 19 86 chr4 169129192 169129441 -15159221 - MLT1B LTR MaLR -178 212 1 28 29 0 0 chr4 169129533 169129568 -15159094 + AT_rich Low_complexity Low_complexity 1 35 0 24 67 0 0 chr4 169131075 169131120 -15157542 + AT_rich Low_complexity Low_complexity 1 45 0 438 246 34 8 chr4 169131704 169131822 -15156840 + MIR SINE MIR 121 241 -21 183 204 0 0 chr4 169131837 169131886 -15156776 + (TTA)n Simple_repeat Simple_repeat 3 51 0 336 270 0 22 chr4 169132209 169132298 -15156364 - L1MC4 LINE L1 -1342 6700 6614 * 337 286 0 0 chr4 169132220 169132304 -15156358 + L1MC4 LINE L1 6614 6697 -1345 1128 128 0 0 chr4 169132305 169132620 -15156042 + (TA)n Simple_repeat Simple_repeat 1 315 0 2456 48 0 0 chr4 169132620 169132914 -15155748 - AluY SINE Alu -17 294 1 229 313 26 61 chr4 169133346 169133461 -15155201 + MLT1J2 LTR MaLR 2 112 -338 1092 196 36 9 chr4 169133463 169133683 -15154979 + MSTB LTR MaLR 135 360 -66 1733 96 61 7 chr4 169133683 169133963 -15154699 - AluSx SINE Alu -14 298 4 1083 255 82 5 chr4 169134297 169134788 -15153874 - MLT2F LTR ERVL -79 584 2 9770 291 51 54 chr4 169134789 169136080 -15152582 - HERVL-F LTR ERVL -1 5653 4360 2049 125 3 26 chr4 169136080 169136393 -15152269 + AluSp SINE Alu 1 306 -7 9770 291 51 54 chr4 169136393 169137706 -15150956 - HERVL-F LTR ERVL -1294 4360 3045 1938 140 11 3 chr4 169137706 169137992 -15150670 + AluSx SINE Alu 1 288 -24 9770 291 51 54 chr4 169137992 169139704 -15148958 - HERVL-F LTR ERVL -2609 3045 1348 1254 277 125 35 chr4 169139804 169140382 -15148280 + MLT1E1 LTR MaLR 1 630 -24 427 280 34 8 chr4 169140429 169140547 -15148115 - MLT1E LTR MaLR -472 121 1 230 0 33 0 chr4 169141227 169141257 -15147405 + (TAA)n Simple_repeat Simple_repeat 1 31 0 1272 127 63 0 chr4 169142801 169143006 -15145656 + AluSg/x SINE Alu 92 309 -3 327 276 65 24 chr4 169143411 169143534 -15145128 - LTR16A1 LTR ERVL 0 457 330 230 300 56 67 chr4 169143563 169143743 -15144919 - LTR16A1 LTR ERVL -184 273 96 238 381 0 0 chr4 169144066 169144150 -15144512 + L2 LINE L2 3229 3312 -1 1780 200 24 26 chr4 169144179 169144241 -15144421 - MLT2D LTR ERVL 0 414 353 405 39 0 0 chr4 169144241 169144292 -15144370 + (GA)n Simple_repeat Simple_repeat 2 52 0 1780 200 24 26 chr4 169144292 169144644 -15144018 - MLT2D LTR ERVL -61 353 1 25 0 0 0 chr4 169145919 169145944 -15142718 + AT_rich Low_complexity Low_complexity 1 25 0 187 376 38 30 chr4 169147019 169147152 -15141510 + L2 LINE L2 3175 3308 -5 25 0 0 0 chr4 169147304 169147329 -15141333 + AT_rich Low_complexity Low_complexity 1 25 0 13856 141 22 29 chr4 169148383 169149157 -15139505 + Tigger2 DNA MER2_type 360 1138 -1580 1061 25 0 0 chr4 169149157 169149279 -15139383 + L1PA7 LINE L1 6025 6146 -8 13856 141 22 29 chr4 169149279 169150881 -15137781 + Tigger2 DNA MER2_type 1138 2718 0 1245 265 100 17 chr4 169150885 169151466 -15137196 - L1M4 LINE L1 -1315 4831 4203 30 0 0 0 chr4 169151628 169151658 -15137004 + AT_rich Low_complexity Low_complexity 1 30 0 389 139 0 33 chr4 169152153 169152275 -15136387 + (TA)n Simple_repeat Simple_repeat 1 118 0 280 227 0 0 chr4 169152974 169153040 -15135622 + L1PB4 LINE L1 6091 6156 0 1982 176 104 66 chr4 169154703 169155204 -15133458 + MLT2B1 LTR ERVL 1 520 0 541 219 188 6 chr4 169155238 169155398 -15133264 + MER5A DNA MER1_type 1 189 0 3151 150 31 18 chr4 169155422 169155644 -15133018 + L1PA16 LINE L1 5584 5801 -365 2688 23 0 0 chr4 169155644 169155950 -15132712 + AluYa5 SINE Alu 1 306 -5 3151 150 31 18 chr4 169155950 169156299 -15132363 + L1PA16 LINE L1 5801 6163 -3 22 0 0 0 chr4 169156466 169156488 -15132174 + AT_rich Low_complexity Low_complexity 1 22 0 402 216 49 0 chr4 169156853 169156955 -15131707 - MER103 DNA DNA -47 119 13 286 295 96 39 chr4 169157254 169157410 -15131252 + MIR SINE MIR 73 237 -25 32 57 0 0 chr4 169158062 169158115 -15130547 + AT_rich Low_complexity Low_complexity 1 53 0 9982 208 36 42 chr4 169158115 169160883 -15127779 - L1MA6 LINE L1 -5 7714 4932 1861 133 0 40 chr4 169160883 169161205 -15127457 - AluSc SINE Alu 0 309 1 9982 208 36 42 chr4 169161205 169161977 -15126685 - L1MA6 LINE L1 -2787 4932 4157 2374 71 7 0 chr4 169161977 169162286 -15126376 - AluY SINE Alu 0 311 1 9982 208 36 42 chr4 169162286 169163083 -15125579 - L1MA6 LINE L1 -3562 4157 3299 849 317 30 67 chr4 169163352 169163847 -15124815 - L1MA6 LINE L1 -6155 1411 495 273 348 134 0 chr4 169164361 169164525 -15124137 + MIR3 SINE MIR 16 201 -7 22 0 0 0 chr4 169164985 169165007 -15123655 + AT_rich Low_complexity Low_complexity 1 22 0 288 0 0 0 chr4 169167343 169167375 -15121287 + (CA)n Simple_repeat Simple_repeat 2 33 0 2102 107 7 23 chr4 169167390 169167698 -15120964 - AluSg SINE Alu -7 303 1 1967 108 8 0 chr4 169168383 169168651 -15120011 - AluSx SINE Alu -22 290 21 323 235 8 15 chr4 169170650 169170791 -15117871 + CT-rich Low_complexity Low_complexity 1 140 0 1985 125 3 39 chr4 169170888 169171199 -15117463 - AluSx SINE Alu -12 300 1 31 0 0 0 chr4 169171344 169171375 -15117287 + AT_rich Low_complexity Low_complexity 1 31 0 207 105 26 0 chr4 169171428 169171466 -15117196 + (TAA)n Simple_repeat Simple_repeat 3 41 0 869 145 0 0 chr4 169171796 169171948 -15116714 - L1MA7 LINE L1 -5 6286 6135 30 0 0 0 chr4 169171975 169172005 -15116657 + AT_rich Low_complexity Low_complexity 1 30 0 401 162 0 0 chr4 169172006 169172074 -15116588 - L1MA7 LINE L1 -171 6120 6053 52 50 0 0 chr4 169172107 169172187 -15116475 + AT_rich Low_complexity Low_complexity 1 80 0 211 220 0 0 chr4 169172502 169172552 -15116110 + T-rich Low_complexity Low_complexity 1 50 0 205 259 129 116 chr4 169173472 169173704 -15114958 - MIR SINE MIR -20 242 8 22 35 0 0 chr4 169173931 169173960 -15114702 + AT_rich Low_complexity Low_complexity 1 29 0 26 30 0 0 chr4 169174251 169174284 -15114378 + AT_rich Low_complexity Low_complexity 1 33 0 208 350 14 28 chr4 169174588 169174731 -15113931 + MIR SINE MIR 65 205 -57 1009 227 71 24 chr4 169175085 169175380 -15113282 + MLT1C LTR MaLR 153 461 -6 1623 169 94 25 chr4 169175388 169175708 -15112954 - THE1B LTR MaLR -21 343 2 6287 116 15 11 chr4 169175709 169176651 -15112011 - THE1B-int LTR MaLR 0 1580 635 339 25 0 0 chr4 169176670 169176710 -15111952 + (CA)n Simple_repeat Simple_repeat 1 40 0 568 196 0 0 chr4 169176752 169176849 -15111813 - Tigger3(Golem) DNA MER2_type -13 3016 2920 21 36 0 0 chr4 169176853 169176881 -15111781 + AT_rich Low_complexity Low_complexity 1 28 0 446 194 0 0 chr4 169176977 169177049 -15111613 - Tigger3(Golem) DNA MER2_type -2949 80 9 21 57 0 0 chr4 169177261 169177296 -15111366 + AT_rich Low_complexity Low_complexity 1 35 0 546 315 77 25 chr4 169178932 169179167 -15109495 - L2 LINE L2 -10 3303 3057 212 332 232 24 chr4 169179465 169179807 -15108855 - L2 LINE L2 -253 3060 2622 702 288 44 18 chr4 169179829 169180103 -15108559 - L1MB8 LINE L1 0 6178 5898 504 324 156 37 chr4 169180104 169180539 -15108123 - L2 LINE L2 -710 2604 2118 263 158 70 18 chr4 169180542 169180599 -15108063 - MER45 DNA AcHobo -5 1576 1517 10063 230 34 15 chr4 169180621 169181221 -15107441 + L1MC1 LINE L1 21 608 -6005 1807 117 0 8 chr4 169181221 169181486 -15107176 + AluSx SINE Alu 50 312 0 10063 230 34 15 chr4 169181486 169187028 -15101634 + L1MC1 LINE L1 608 6607 -6 433 294 18 0 chr4 169187039 169187148 -15101514 - MER45 DNA AcHobo -928 112 2 1417 223 38 46 chr4 169187225 169187394 -15101268 + MLT1B LTR MaLR 21 190 -200 263 28 28 0 chr4 169187394 169187430 -15101232 + (CA)n Simple_repeat Simple_repeat 2 38 0 1417 223 38 46 chr4 169187430 169187633 -15101029 + MLT1B LTR MaLR 190 390 0 330 335 59 32 chr4 169187633 169187854 -15100808 - L2 LINE L2 -1307 2007 1781 1479 271 87 36 chr4 169188130 169188625 -15100037 - MER77 LTR ERV1 -13 592 73 234 326 11 22 chr4 169188724 169188816 -15099846 - MIR SINE MIR -9 253 163 302 271 21 10 chr4 169189169 169189265 -15099397 - L1ME4a LINE L1 -4 6117 6021 3955 92 9 5 chr4 169189359 169189911 -15098751 - MER41A LTR ERV1 0 554 1 13129 121 40 20 chr4 169189911 169193383 -15095279 - MER41A-int LTR ERV1 -3 5943 2186 3723 136 40 13 chr4 169193373 169193991 -15094671 - MER41A-int LTR ERV1 -5311 635 1 * 3883 98 9 0 chr4 169194077 169194626 -15094036 - MER41A LTR ERV1 0 554 1 1448 193 90 9 chr4 169194646 169195022 -15093640 - LOR1b LTR ERV1 0 461 1 232 424 44 0 chr4 169195093 169195298 -15093364 - MIR SINE MIR -21 241 28 1089 298 140 17 chr4 169197095 169197622 -15091040 + L2 LINE L2 2237 2828 -486 28 48 0 0 chr4 169197824 169197866 -15090796 + AT_rich Low_complexity Low_complexity 1 42 0 1222 275 112 16 chr4 169199706 169200250 -15088412 - L1MD1 LINE L1 -352 5818 5255 326 318 38 28 chr4 169200260 169200471 -15088191 - L1MD1 LINE L1 -939 5207 4995 965 258 96 78 chr4 169200589 169201151 -15087511 - LTR41 LTR ERVL -1 772 201 208 392 24 16 chr4 169201924 169202049 -15086613 + L2 LINE L2 2170 2295 -1019 23 0 0 0 chr4 169203339 169203362 -15085300 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr4 169203461 169203483 -15085179 + AT_rich Low_complexity Low_complexity 1 22 0 478 284 157 18 chr4 169203579 169203808 -15084854 + MIR SINE MIR 1 261 -1 1857 139 24 10 chr4 169204054 169204180 -15084482 + AluSx SINE Alu 1 124 -188 207 0 0 0 chr4 169204180 169204203 -15084459 + (CA)n Simple_repeat Simple_repeat 2 24 0 1857 139 24 10 chr4 169204203 169204371 -15084291 + AluSx SINE Alu 124 299 -13 337 105 53 11 chr4 169204405 169204500 -15084162 + (TCTA)n Simple_repeat Simple_repeat 2 100 0 2633 111 0 0 chr4 169205252 169205613 -15083049 + THE1B LTR MaLR 1 361 -3 1895 139 4 0 chr4 169206469 169206743 -15081919 + AluSx SINE Alu 2 276 -36 986 293 121 32 chr4 169206983 169208485 -15080177 + L1MEc LINE L1 195 1930 -4466 306 297 48 0 chr4 169208747 169208892 -15079770 + L1MEc LINE L1 2233 2384 -4012 1064 260 132 23 chr4 169208985 169210003 -15078659 + L1MEc LINE L1 2386 3586 -2629 266 305 116 0 chr4 169210003 169210098 -15078564 - MIR SINE MIR -155 107 2 37 39 0 0 chr4 169210473 169210524 -15078138 + AT_rich Low_complexity Low_complexity 1 51 0 2013 151 0 0 chr4 169211221 169211525 -15077137 + AluSx SINE Alu 1 304 -8 244 169 56 0 chr4 169211739 169211810 -15076852 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 28 0 0 0 chr4 169211957 169211985 -15076677 + AT_rich Low_complexity Low_complexity 1 28 0 405 269 17 0 chr4 169211986 169212105 -15076557 + LTR37B LTR ERV1 348 468 0 231 36 0 0 chr4 169212287 169212315 -15076347 + (T)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr4 169213016 169213037 -15075625 + AT_rich Low_complexity Low_complexity 1 21 0 209 316 0 0 chr4 169213354 169213411 -15075251 + (CA)n Simple_repeat Simple_repeat 2 58 0 352 60 40 0 chr4 169214422 169214472 -15074190 - MADE1 DNA Mariner -28 52 1 453 251 63 104 chr4 169215408 169215695 -15072967 + MER31-int LTR ERV1 3777 4051 -885 2210 144 0 0 chr4 169215971 169216318 -15072344 + L1PA13 LINE L1 5814 6160 -3 272 278 113 46 chr4 169216356 169216507 -15072155 + LTR37B LTR ERV1 4 164 -304 404 256 60 30 chr4 169216621 169216820 -15071842 + LTR37B LTR ERV1 201 405 -63 23 0 0 0 chr4 169216824 169216847 -15071815 + AT_rich Low_complexity Low_complexity 1 23 0 1518 171 20 17 chr4 169217697 169217990 -15070672 + AluJo SINE Alu 17 310 -2 677 305 108 48 chr4 169219146 169219582 -15069080 + MLT1J LTR MaLR 1 462 -49 2081 112 0 38 chr4 169220986 169221300 -15067362 - AluSg SINE Alu -8 302 1 3951 73 7 7 chr4 169222033 169222577 -15066085 - L1PA8 LINE L1 -2 6170 5627 593 313 61 22 chr4 169223274 169223504 -15065158 - MIR SINE MIR -10 252 14 25 0 0 0 chr4 169223970 169223995 -15064667 + AT_rich Low_complexity Low_complexity 1 25 0 241 255 41 31 chr4 169225680 169225778 -15062884 - L1ME LINE L1 -454 5667 5569 6828 142 21 1 chr4 169225901 169227005 -15061657 - Tigger1 DNA MER2_type -1292 1126 1 393 355 49 52 chr4 169227007 169227314 -15061348 - MLT1I LTR MaLR -103 306 1 1074 300 77 18 chr4 169228736 169229076 -15059586 - MLT1I LTR MaLR -1 408 49 22 35 0 0 chr4 169230588 169230617 -15058045 + AT_rich Low_complexity Low_complexity 1 29 0 2200 48 0 0 chr4 169230831 169231100 -15057562 - L1PA6 LINE L1 -202 5952 5684 1460 85 0 0 chr4 169231100 169231296 -15057366 + L1PA6 LINE L1 5950 6149 -5 378 207 58 0 chr4 169231334 169231421 -15057241 + L1ME2 LINE L1 5456 5547 -615 233 140 40 0 chr4 169231432 169231482 -15057180 - LTR66 LTR ERVL -162 448 397 228 153 0 51 chr4 169231483 169231542 -15057120 + (TA)n Simple_repeat Simple_repeat 1 56 0 968 266 100 38 chr4 169231543 169231995 -15056667 + L1ME2 LINE L1 5665 6144 -20 22 0 0 0 chr4 169232242 169232264 -15056398 + AT_rich Low_complexity Low_complexity 1 22 0 2262 121 14 14 chr4 169232531 169232894 -15055768 + L1PA10 LINE L1 5806 6168 0 2050 121 4 0 chr4 169233046 169233326 -15055336 + AluSp SINE Alu 1 281 -32 2245 130 8 51 chr4 169233605 169233774 -15054888 + THE1C LTR MaLR 1 176 -199 2168 89 7 3 chr4 169233774 169234105 -15054557 - AluY SINE Alu 0 332 1 2245 130 8 51 chr4 169234105 169234325 -15054337 + THE1C LTR MaLR 176 375 0 31 44 0 0 chr4 169234438 169234483 -15054179 + AT_rich Low_complexity Low_complexity 1 45 0 2038 180 58 17 chr4 169234500 169234917 -15053745 + Tigger2a DNA MER2_type 1 434 0 2368 70 0 10 chr4 169336062 169336376 -14952286 - AluY SINE Alu 0 311 1 658 286 131 9 chr4 169336808 169337137 -14951525 - L1ME3A LINE L1 -208 5962 5594 307 143 41 0 chr4 169338082 169338131 -14950531 + MLT1E1 LTR MaLR 1 51 -603 1009 245 61 0 chr4 169338164 169338409 -14950253 + MLT1E3 LTR MaLR 365 624 0 307 276 119 8 chr4 169338410 169338544 -14950118 - L1ME3A LINE L1 -1000 5146 4998 329 278 81 43 chr4 169338640 169338874 -14949788 + L1M4 LINE L1 4377 4619 -1527 1782 121 28 0 chr4 169338941 169339223 -14949439 + AluJb SINE Alu 14 303 -9 491 250 29 52 chr4 169339266 169339438 -14949224 + MER97b DNA MER1_type? 9 176 -877 268 293 142 26 chr4 169339488 169339720 -14948942 + L1M4 LINE L1 4740 4998 -1148 43465 43 1 1 chr4 169341992 169348148 -14940514 - L1PA3 LINE L1 -3 6152 1 1514 155 4 4 chr4 169348462 169348707 -14939955 - AluSx SINE Alu -8 304 60 180 111 0 0 chr4 169349866 169349893 -14938769 + (TA)n Simple_repeat Simple_repeat 2 28 0 297 0 0 0 chr4 169349979 169350012 -14938650 + (TG)n Simple_repeat Simple_repeat 2 34 0 1208 146 19 9 chr4 169350062 169350274 -14938388 + L1 LINE L1 3353 3566 -2580 1469 204 41 81 chr4 169350308 169350750 -14937912 - MSTB1 LTR MaLR -3 429 6 1058 211 9 0 chr4 169350754 169350977 -14937685 + L1 LINE L1 3579 3803 -2343 676 156 0 85 chr4 169351080 169351221 -14937441 + MLT1B LTR MaLR 262 390 0 2022 162 38 30 chr4 169351228 169351655 -14937007 - MSTB1 LTR MaLR -2 430 1 2167 246 86 36 chr4 169351671 169351849 -14936813 - L1ME LINE L1 -489 6071 5903 579 81 30 0 chr4 169351849 169351948 -14936714 + (TCTA)n Simple_repeat Simple_repeat 4 105 0 2167 246 86 36 chr4 169351948 169352709 -14935953 - L1ME LINE L1 -657 5903 5067 302 0 26 0 chr4 169352709 169352747 -14935915 + (TG)n Simple_repeat Simple_repeat 2 40 0 2167 246 86 36 chr4 169352747 169353031 -14935631 - L1ME LINE L1 -1493 5067 4799 609 267 79 17 chr4 169353078 169353370 -14935292 - L1ME LINE L1 -2603 3937 3628 * 1829 238 98 25 chr4 169353360 169355737 -14932925 - L1ME LINE L1 -3158 3382 806 613 225 93 28 chr4 169355752 169355934 -14932728 - MLT1C LTR MaLR -273 194 1 1797 201 31 20 chr4 169356077 169356469 -14932193 + MSTD LTR MaLR 1 396 0 282 306 51 51 chr4 169356499 169356695 -14931967 - L1ME LINE L1 -6330 210 15 * 327 273 56 20 chr4 169356692 169356941 -14931721 - L1ME LINE L1 -3981 2099 1842 208 185 62 0 chr4 169356954 169357019 -14931643 + (TA)n Simple_repeat Simple_repeat 1 69 0 1696 287 87 27 chr4 169357093 169358337 -14930325 - L1ME LINE L1 -4454 1626 334 225 379 28 23 chr4 169358483 169358660 -14930002 - L1ME LINE L1 -5882 188 11 22 0 0 0 chr4 169358803 169358825 -14929837 + AT_rich Low_complexity Low_complexity 1 22 0 30 93 0 0 chr4 169360075 169360161 -14928501 + AT_rich Low_complexity Low_complexity 1 86 0 21 0 0 0 chr4 169360219 169360240 -14928422 + AT_rich Low_complexity Low_complexity 1 21 0 396 265 42 74 chr4 169360567 169360782 -14927880 - MER21B LTR ERV1 -558 305 98 273 228 178 30 chr4 169360758 169360859 -14927803 - MER77 LTR ERV1 -411 194 79 * 2127 161 159 58 chr4 169361455 169362002 -14926660 + MER6A DNA MER2_type 4 605 0 2116 195 30 34 chr4 169362140 169362612 -14926050 - LTR42 LTR ERVL -1 494 25 640 318 33 4 chr4 169362736 169362978 -14925684 - MIR SINE MIR -3 259 11 2019 127 0 0 chr4 169363044 169363356 -14925306 + AluSx SINE Alu 1 312 0 23 33 0 0 chr4 169364497 169364527 -14924135 + AT_rich Low_complexity Low_complexity 1 30 0 1378 204 18 14 chr4 169364536 169364820 -14923842 - AluJo SINE Alu -27 285 1 2280 73 0 0 chr4 169364876 169365151 -14923511 - AluY SINE Alu -36 275 1 942 300 69 13 chr4 169367435 169367752 -14920910 - LTR16A LTR ERVL 0 450 116 767 163 5 33 chr4 169368999 169369183 -14919479 + GA-rich Low_complexity Low_complexity 2 180 0 1845 141 33 7 chr4 169369232 169369531 -14919131 - AluJb SINE Alu -5 307 1 321 300 33 0 chr4 169369587 169369677 -14918985 - MIR SINE MIR -113 149 57 35 78 0 0 chr4 169371549 169371626 -14917036 + AT_rich Low_complexity Low_complexity 1 77 0 6730 186 42 9 chr4 169372422 169374704 -14913958 + L1MA7 LINE L1 3928 6289 -2 23 54 0 0 chr4 169375608 169375645 -14913017 + AT_rich Low_complexity Low_complexity 1 37 0 227 152 0 0 chr4 169375649 169375695 -14912967 + LTR66 LTR ERVL 394 439 -171 595 231 106 5 chr4 169376099 169376298 -14912364 + LTR33 LTR ERVL 46 264 -257 1094 286 98 21 chr4 169376441 169376868 -14911794 - MLT2B1 LTR ERVL -60 460 1 2372 302 116 31 chr4 169376889 169378199 -14910463 - L2 LINE L2 -1872 1442 22 242 324 57 9 chr4 169378916 169379021 -14909641 - L2 LINE L2 -2993 321 212 351 121 0 0 chr4 169379329 169379387 -14909275 + (GA)n Simple_repeat Simple_repeat 2 59 0 1704 150 23 10 chr4 169379791 169380091 -14908571 + AluJo SINE Alu 1 304 -8 313 330 0 9 chr4 169380363 169380475 -14908187 - MLT1I LTR MaLR -236 173 63 1555 189 0 36 chr4 169381648 169381954 -14906708 - AluJb SINE Alu -11 301 7 1591 237 11 16 chr4 169382343 169382710 -14905952 + MLT1A1 LTR MaLR 1 365 0 26 0 0 0 chr4 169382735 169382761 -14905901 + AT_rich Low_complexity Low_complexity 1 26 0 5449 28 0 2 chr4 169383021 169383663 -14904999 - L1PA3 LINE L1 -1 6154 5514 24 67 0 0 chr4 169383665 169383710 -14904952 + AT_rich Low_complexity Low_complexity 1 45 0 228 301 54 76 chr4 169384523 169384839 -14903823 - L2 LINE L2 -2146 1168 860 711 282 51 95 chr4 169384942 169385356 -14903306 - L2 LINE L2 0 3313 2938 2949 177 29 26 chr4 169385356 169385726 -14902936 - L1PB4 LINE L1 -1 6155 5781 192 40 0 0 chr4 169385726 169385751 -14902911 + (TG)n Simple_repeat Simple_repeat 2 26 0 2949 177 29 26 chr4 169385751 169386002 -14902660 - L1PB4 LINE L1 -375 5781 5532 711 282 51 95 chr4 169386002 169386405 -14902257 - L2 LINE L2 -375 2938 2519 205 302 0 0 chr4 169386426 169386489 -14902173 - L2 LINE L2 -903 2411 2349 27 73 0 0 chr4 169387809 169387864 -14900798 + AT_rich Low_complexity Low_complexity 1 55 0 346 330 0 0 chr4 169387981 169388069 -14900593 - MIR SINE MIR -117 145 58 413 313 85 17 chr4 169388091 169388267 -14900395 + MIR SINE MIR 27 214 -48 2143 106 0 17 chr4 169388623 169388916 -14899746 - AluSq SINE Alu -21 292 5 366 314 34 14 chr4 169389588 169389795 -14898867 - L1MEd LINE L1 -5317 802 592 297 302 82 0 chr4 169390117 169390276 -14898386 - L1MEd LINE L1 -5890 229 58 1434 181 78 53 chr4 169390969 169391033 -14897629 - MLT1A2 LTR MaLR -4 370 309 2073 118 0 16 chr4 169391033 169391347 -14897315 + AluSc SINE Alu 1 309 0 1434 181 78 53 chr4 169391347 169391642 -14897020 - MLT1A2 LTR MaLR -65 309 2 12290 78 8 5 chr4 169391753 169394186 -14894476 - L1PA7 LINE L1 0 6154 3703 459 117 3 14 chr4 169394248 169394338 -14894324 - MLT1A1 LTR MaLR -51 416 250 222 193 0 0 chr4 169394883 169394940 -14893722 + (TA)n Simple_repeat Simple_repeat 2 58 0 322 239 11 0 chr4 169394998 169395086 -14893576 + (TA)n Simple_repeat Simple_repeat 1 89 0 1654 169 40 13 chr4 169396254 169396556 -14892106 - AluSg SINE Alu 0 310 1 1547 129 133 0 chr4 169396941 169397197 -14891465 - AluSx SINE Alu -18 294 5 1029 264 130 70 chr4 169397241 169397727 -14890935 - MLT1H1 LTR MaLR -33 562 3 236 303 184 28 chr4 169398090 169398308 -14890354 - MLT1L LTR MaLR -2 613 362 338 330 81 21 chr4 169398467 169398703 -14889959 - HAL1 LINE L1 0 2507 2258 1705 204 36 11 chr4 169398815 169399173 -14889489 - MLT1A2 LTR MaLR 0 374 8 1047 179 46 0 chr4 169399173 169399369 -14889293 - MLT1A2-int LTR MaLR -19 1716 1512 339 333 30 0 chr4 169399370 169399469 -14889193 - MLT1A2-int LTR MaLR -332 1403 1302 37680 85 13 7 chr4 169400212 169402529 -14886133 + L1PA6 LINE L1 13 2314 -3840 378 0 0 0 chr4 169402529 169402571 -14886091 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 37680 85 13 7 chr4 169402571 169406358 -14882304 + L1PA6 LINE L1 2314 6152 -2 321 267 23 0 chr4 169406514 169406600 -14882062 - L1MC4 LINE L1 -1340 6702 6615 256 228 43 43 chr4 169406607 169406699 -14881963 + L1MC4 LINE L1 6614 6705 -1337 303 213 0 0 chr4 169406704 169406784 -14881878 + (TA)n Simple_repeat Simple_repeat 1 80 0 195 162 0 0 chr4 169406783 169406820 -14881842 + (CA)n Simple_repeat Simple_repeat 2 38 0 * 236 269 15 0 chr4 169406839 169406906 -14881756 - L1ME LINE L1 -370 5685 5618 266 302 19 31 chr4 169407059 169407218 -14881444 - L1ME LINE L1 -690 5414 5258 182 37 37 0 chr4 169407219 169407246 -14881416 + (TC)n Simple_repeat Simple_repeat 1 28 0 2815 97 70 4 chr4 169407446 169407902 -14880760 + LTR19A LTR ERV1 1 486 0 345 304 52 45 chr4 169407935 169408273 -14880389 - L1ME LINE L1 -1043 5037 4699 1090 279 122 8 chr4 169408285 169408686 -14879976 + LTR40c LTR ERVL 10 456 -9 483 291 84 36 chr4 169408968 169409442 -14879220 - L1ME LINE L1 -2688 3392 2896 270 253 11 74 chr4 169409448 169409543 -14879119 - L1ME LINE L1 -4641 1620 1532 920 235 32 103 chr4 169409545 169409613 -14879049 - MLT1A1 LTR MaLR 0 365 294 2107 100 0 21 chr4 169409613 169409935 -14878727 + AluY SINE Alu 1 316 0 920 235 32 103 chr4 169409935 169410276 -14878386 - MLT1A1 LTR MaLR -71 294 15 986 289 133 46 chr4 169410317 169411538 -14877124 - L1ME LINE L1 -4622 1458 123 438 242 50 0 chr4 169411540 169411660 -14877002 - L1MC3 LINE L1 -923 6862 6737 882 267 18 29 chr4 169412473 169412754 -14875908 - MLT1C LTR MaLR 0 467 190 204 152 0 0 chr4 169412806 169412839 -14875823 - L2 LINE L2 -10 3303 3271 753 193 27 37 chr4 169412901 169413088 -14875574 - MLT1C LTR MaLR -281 186 2 2203 124 40 11 chr4 169413216 169413570 -14875092 - THE1B LTR MaLR 0 364 1 21 82 0 0 chr4 169413643 169413692 -14874970 + AT_rich Low_complexity Low_complexity 1 49 0 31 26 0 0 chr4 169414909 169414947 -14873715 + AT_rich Low_complexity Low_complexity 1 38 0 186 43 0 0 chr4 169415294 169415317 -14873345 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2010 120 3 3 chr4 169415319 169415602 -14873060 - AluSx SINE Alu -29 283 1 1231 184 83 49 chr4 169416469 169416889 -14871773 - MLT2A2 LTR ERVL -2 451 110 303 122 0 0 chr4 169417196 169417245 -14871417 + (CA)n Simple_repeat Simple_repeat 2 50 0 195 152 0 0 chr4 169417535 169417568 -14871094 - L2 LINE L2 -10 3303 3271 273 143 91 39 chr4 169417746 169417855 -14870807 + GA-rich Low_complexity Low_complexity 1 114 0 183 80 0 0 chr4 169418327 169418352 -14870310 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2272 280 120 25 chr4 169418464 169419124 -14869538 + MER69B DNA AcHobo 1 792 -1734 1743 136 87 25 chr4 169419124 169419447 -14869215 - MER61A LTR ERV1 0 343 1 2272 280 120 25 chr4 169419447 169419804 -14868858 + MER69B DNA AcHobo 792 1114 -112 2108 121 0 10 chr4 169420006 169420295 -14868367 - AluSx SINE Alu -26 286 1 721 227 37 50 chr4 169420722 169420794 -14867868 + MER6A DNA MER2_type 2 73 -532 2278 165 40 62 chr4 169420794 169421290 -14867372 - MER66B LTR ERV1 0 486 2 721 227 37 50 chr4 169421290 169421459 -14867203 + MER6A DNA MER2_type 73 240 -365 429 298 0 0 chr4 169421468 169421646 -14867016 + (TG)n Simple_repeat Simple_repeat 2 179 0 485 264 0 11 chr4 169421671 169421853 -14866809 + (TG)n Simple_repeat Simple_repeat 1 180 0 304 85 71 71 chr4 169421866 169422007 -14866655 + (TGAG)n Simple_repeat Simple_repeat 4 144 0 3231 182 34 14 chr4 169422063 169422707 -14865955 + MER6A DNA MER2_type 209 605 0 26 0 0 0 chr4 169423296 169423322 -14865340 + AT_rich Low_complexity Low_complexity 1 26 0 1644 224 13 40 chr4 169423435 169423471 -14865191 - MLT1A1 LTR MaLR 0 365 330 2415 76 0 0 chr4 169423471 169423775 -14864887 - AluY SINE Alu -7 304 1 1644 224 13 40 chr4 169423775 169424113 -14864549 - MLT1A1 LTR MaLR -35 330 1 7301 214 51 34 chr4 169424113 169425812 -14862850 - MLT1A1-int LTR MaLR 0 1735 9 1843 210 14 0 chr4 169425822 169426179 -14862483 - MLT1A1 LTR MaLR -2 363 2 269 357 10 0 chr4 169426203 169426301 -14862361 - L2 LINE L2 0 3272 3174 301 294 119 7 chr4 169426633 169426776 -14861886 - MIR SINE MIR -22 240 82 601 246 50 50 chr4 169427062 169427359 -14861303 + L1ME1 LINE L1 4487 4783 -1363 1083 211 0 127 chr4 169427377 169427723 -14860939 - MLT1A1 LTR MaLR -63 302 1 1938 247 72 27 chr4 169427855 169428628 -14860034 + L1ME2 LINE L1 5341 6148 -16 23 33 0 0 chr4 169429860 169429890 -14858772 + AT_rich Low_complexity Low_complexity 1 30 0 239 299 24 16 chr4 169430005 169430132 -14858530 + L1ME1 LINE L1 4891 5018 -1128 2363 106 3 0 chr4 169430287 169430599 -14858063 + AluSq SINE Alu 1 313 0 1255 221 83 57 chr4 169430731 169431238 -14857424 + L1ME1 LINE L1 5295 5814 -1994 3131 235 65 54 chr4 169431253 169432300 -14856362 + L1MC4 LINE L1 6691 7755 -287 2626 30 3 0 chr4 169432300 169432600 -14856062 - AluY SINE Alu -2 309 9 3131 235 65 54 chr4 169432600 169432745 -14855917 + L1MC4 LINE L1 7755 7897 -145 272 248 0 15 chr4 169432759 169432842 -14855820 + L1MC4 LINE L1 7728 8042 0 29 47 0 0 chr4 169432902 169432945 -14855717 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr4 169434650 169434673 -14853989 + AT_rich Low_complexity Low_complexity 1 23 0 1515 210 11 11 chr4 169434835 169435121 -14853541 - AluJo SINE Alu -26 286 1 405 336 38 58 chr4 169435230 169435793 -14852869 - L2 LINE L2 -940 2374 1776 21 0 0 0 chr4 169436325 169436346 -14852316 + AT_rich Low_complexity Low_complexity 1 21 0 316 267 111 52 chr4 169436889 169437061 -14851601 - MLT1B LTR MaLR -206 184 3 494 193 131 28 chr4 169437066 169437242 -14851420 + L1MC4 LINE L1 5688 5881 -2161 * 1432 203 111 42 chr4 169437144 169437386 -14851276 + L1MA7 LINE L1 5774 5998 -293 2244 95 24 0 chr4 169437386 169437682 -14850980 + AluSg SINE Alu 1 303 -7 1432 203 111 42 chr4 169437682 169437918 -14850744 + L1MA7 LINE L1 5998 6285 -6 537 255 136 25 chr4 169437935 169438178 -14850484 + L1ME1 LINE L1 5892 6161 -5 966 229 28 0 chr4 169439184 169439402 -14849260 + MER58A DNA MER1_type 1 224 0 949 292 118 32 chr4 169439439 169439932 -14848730 - MLT1H1 LTR MaLR -18 537 3 35 0 0 0 chr4 169440141 169440176 -14848486 + AT_rich Low_complexity Low_complexity 1 35 0 2227 181 12 24 chr4 169441141 169441556 -14847106 + MSTC LTR MaLR 19 428 0 2145 133 3 0 chr4 169441565 169441874 -14846788 + AluSx SINE Alu 1 310 -2 197 361 98 22 chr4 169442179 169442362 -14846300 - L2 LINE L2 -219 3094 2898 875 292 117 13 chr4 169442542 169442919 -14845743 - MLT1H LTR MaLR -131 418 3 299 360 86 32 chr4 169442921 169443293 -14845369 - L2 LINE L2 -491 2823 2432 10740 233 63 34 chr4 169443307 169443454 -14845208 - L1MA10 LINE L1 -18 6380 6239 249 33 0 0 chr4 169443454 169443484 -14845178 + (TTA)n Simple_repeat Simple_repeat 1 30 0 10740 233 63 34 chr4 169443484 169443845 -14844817 - L1MA10 LINE L1 -159 6239 5890 342 0 0 0 chr4 169443845 169443883 -14844779 + (TG)n Simple_repeat Simple_repeat 2 39 0 10740 233 63 34 chr4 169443883 169449868 -14838794 - L1MA10 LINE L1 -508 5890 1 739 244 42 36 chr4 169450180 169450540 -14838122 - Charlie1 DNA MER1_type -15 2746 2385 1090 203 37 64 chr4 169450886 169451182 -14837480 - MLT1B LTR MaLR -2 388 101 1913 94 0 0 chr4 169451205 169451460 -14837202 + AluY SINE Alu 57 311 0 359 154 0 46 chr4 169451676 169451741 -14836921 + Tigger2 DNA MER2_type 1 62 -2656 3297 36 0 0 chr4 169451913 169452304 -14836358 - L1PA3 LINE L1 -3 6152 5762 2350 185 35 5 chr4 169452328 169452750 -14835912 + Tigger2 DNA MER2_type 2284 2718 0 1039 191 25 5 chr4 169452837 169453041 -14835621 + L1M1 LINE L1 27 234 -7331 1555 219 0 6 chr4 169453074 169453389 -14835273 - MER57A LTR ERV1 -3 400 88 2934 166 50 3 chr4 169453395 169454045 -14834617 + L1M1 LINE L1 2214 2856 -4709 1933 189 68 34 chr4 169454079 169454523 -14834139 + LTR2B LTR ERV1 32 490 0 5849 201 44 33 chr4 169454539 169456214 -14832448 + L1M1 LINE L1 2895 4604 -2961 2256 61 16 42 chr4 169456214 169456525 -14832137 + AluY SINE Alu 1 303 -8 5849 201 44 33 chr4 169456525 169457095 -14831567 + L1M1 LINE L1 4604 5166 -2399 204 257 0 0 chr4 169457903 169457973 -14830689 + GA-rich Low_complexity Low_complexity 3 72 0 1517 148 62 4 chr4 169458666 169458909 -14829753 - AluSp SINE Alu -30 283 27 447 245 63 14 chr4 169458920 169459063 -14829599 - L1ME3 LINE L1 -1 6161 6012 2198 112 86 69 chr4 169459771 169460005 -14828657 - MSTA LTR MaLR -2 426 180 1969 141 0 0 chr4 169460005 169460288 -14828374 - AluSx SINE Alu -27 285 3 2198 112 86 69 chr4 169460288 169460472 -14828190 - MSTA LTR MaLR -248 180 1 34 57 0 34 chr4 169461440 169461528 -14827134 + AT_rich Low_complexity Low_complexity 1 85 0 825 222 0 6 chr4 169463500 169463662 -14825000 + MLT1A2 LTR MaLR 1 161 -213 239 192 5 16 chr4 169463665 169463717 -14824945 + L1MB2 LINE L1 6089 6140 -43 372 43 0 0 chr4 169463717 169463763 -14824899 + (TA)n Simple_repeat Simple_repeat 2 47 0 2195 129 3 0 chr4 169463763 169464065 -14824597 - AluSx SINE Alu -9 303 1 239 192 5 16 chr4 169464065 169464095 -14824567 + L1MB2 LINE L1 6138 6182 -1 646 235 54 41 chr4 169464104 169464325 -14824337 + MLT1A2 LTR MaLR 151 374 0 2373 161 48 7 chr4 169464777 169465192 -14823470 + Tigger2a DNA MER2_type 2 433 -1 773 146 8 15 chr4 169466919 169467049 -14821613 + AluJo SINE Alu 9 137 -175 957 228 48 68 chr4 169467456 169467811 -14820851 + MLT1D LTR MaLR 57 404 -101 36 62 0 0 chr4 169467853 169467917 -14820745 + AT_rich Low_complexity Low_complexity 1 64 0 1521 226 29 47 chr4 169468145 169468631 -14820031 - MLT1D LTR MaLR -7 498 22 326 100 17 0 chr4 169468790 169468850 -14819812 + (GA)n Simple_repeat Simple_repeat 1 61 0 5988 133 19 16 chr4 169468951 169469917 -14818745 + LTR5 LTR ERVK 1 969 0 372 285 167 7 chr4 169469917 169470055 -14818607 + MER5A DNA MER1_type 29 189 0 433 311 105 11 chr4 169470086 169470276 -14818386 + MIR SINE MIR 9 216 -46 29 28 0 0 chr4 169471216 169471252 -14817410 + AT_rich Low_complexity Low_complexity 1 36 0 358 238 20 30 chr4 169471715 169471816 -14816846 + MIR SINE MIR 143 242 -20 264 30 0 0 chr4 169472518 169472551 -14816111 + (CA)n Simple_repeat Simple_repeat 2 34 0 3756 138 86 29 chr4 169472756 169472987 -14815675 - MER50 LTR ERV1 -12 722 506 18380 86 4 5 chr4 169472987 169476367 -14812295 - L1PA7 LINE L1 0 6154 2763 3756 138 86 29 chr4 169476367 169476818 -14811844 - MER50 LTR ERV1 -228 506 1 1185 193 62 108 chr4 169480096 169480579 -14808083 - MLT1C LTR MaLR -6 461 1 33 0 0 0 chr4 169480992 169481025 -14807637 + AT_rich Low_complexity Low_complexity 1 33 0 699 291 46 21 chr4 169481411 169481652 -14807010 + MIR SINE MIR 13 259 -3 1681 240 42 30 chr4 169481982 169482457 -14806205 + L1ME1 LINE L1 5668 6148 -18 181 286 0 0 chr4 169482500 169482535 -14806127 - L2 LINE L2 -16 3256 3222 216 67 0 0 chr4 169483350 169483380 -14805282 + (TG)n Simple_repeat Simple_repeat 1 30 0 183 340 94 38 chr4 169483565 169483671 -14804991 + MIR3 SINE MIR 67 178 -30 2698 17 3 0 chr4 169484591 169484892 -14803770 + AluY SINE Alu 1 302 -9 27 0 0 0 chr4 169486815 169486842 -14801820 + AT_rich Low_complexity Low_complexity 1 27 0 607 284 56 22 chr4 169486862 169487094 -14801568 + MIR SINE MIR 7 246 -16 2347 76 3 10 chr4 169487486 169487789 -14800873 - AluSg SINE Alu -8 302 2 798 30 0 3 chr4 169488600 169488611 -14800051 + L1P LINE L1 5082 5092 -1054 278 0 54 0 chr4 169488611 169488648 -14800014 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 3660 32 9 0 chr4 169488648 169489083 -14799579 - L1PA3 LINE L1 -11 6144 5706 798 30 0 3 chr4 169489083 169489181 -14799481 + L1P LINE L1 5090 5189 -957 258 56 0 0 chr4 169489694 169489730 -14798932 + (CA)n Simple_repeat Simple_repeat 1 36 0 273 208 0 0 chr4 169490418 169490490 -14798172 + CT-rich Low_complexity Low_complexity 1 72 0 443 314 39 13 chr4 169490588 169490744 -14797918 + MIR SINE MIR 44 203 -59 7009 147 58 18 chr4 169493906 169495159 -14793503 + HSMAR2 DNA Mariner 1 1302 0 890 170 30 27 chr4 169496275 169496441 -14792221 + L1MB2 LINE L1 5969 6131 -52 1636 116 9 4 chr4 169496441 169496674 -14791988 + AluSg/x SINE Alu 75 308 -2 890 170 30 27 chr4 169496674 169496726 -14791936 + L1MB2 LINE L1 6131 6181 -2 21 0 0 0 chr4 169496977 169496998 -14791664 + AT_rich Low_complexity Low_complexity 1 21 0 237 65 0 0 chr4 169497107 169497138 -14791524 + (TTA)n Simple_repeat Simple_repeat 1 31 0 2294 122 25 11 chr4 169497328 169497682 -14790980 + THE1B LTR MaLR 6 364 0 497 281 85 51 chr4 169498226 169498461 -14790201 - MIR SINE MIR 0 262 20 381 245 51 0 chr4 169499618 169499716 -14788946 - MER103 DNA DNA -63 103 1 947 107 3 30 chr4 169501549 169501857 -14786805 + HSATII Satellite Satellite 1 299 -9 760 135 18 18 chr4 169501888 169502058 -14786604 + HSATII Satellite Satellite 1 170 0 917 118 13 16 chr4 169502083 169502623 -14786039 + HSATII Satellite Satellite 1 538 0 911 128 11 6 chr4 169502746 169503223 -14785439 - HSATII Satellite Satellite 0 479 1 998 115 8 10 chr4 169503235 169503752 -14784910 - HSATII Satellite Satellite -8 516 1 965 118 14 18 chr4 169503763 169504894 -14783768 - HSATII Satellite Satellite -8 1126 1 998 102 7 19 chr4 169504916 169505537 -14783125 - HSATII Satellite Satellite -9 613 1 953 110 16 5 chr4 169505550 169506663 -14781999 - HSATII Satellite Satellite 0 1124 1 986 113 13 12 chr4 169506693 169508906 -14779756 - HSATII Satellite Satellite 0 2216 1 932 126 9 19 chr4 169508936 169509381 -14779281 - HSATII Satellite Satellite -27 440 1 965 115 9 15 chr4 169509396 169511154 -14777508 - HSATII Satellite Satellite -27 1746 1 998 102 7 17 chr4 169511179 169511903 -14776759 - HSATII Satellite Satellite -50 717 1 977 116 13 16 chr4 169511922 169514707 -14773955 - HSATII Satellite Satellite -8 2775 1 998 111 12 18 chr4 169514729 169517823 -14770839 - HSATII Satellite Satellite 0 3073 1 980 103 13 8 chr4 169517940 169518696 -14769966 + HSATII Satellite Satellite 1 759 -9 823 118 18 18 chr4 169518727 169518897 -14769765 + HSATII Satellite Satellite 1 170 0 965 102 8 15 chr4 169518924 169520086 -14768576 + HSATII Satellite Satellite 1 1153 -23 1001 117 14 10 chr4 169520108 169522741 -14765921 + HSATII Satellite Satellite 1 2643 -44 361 141 24 0 chr4 169523774 169523859 -14764803 + (CA)n Simple_repeat Simple_repeat 2 88 0 199 82 0 61 chr4 169526312 169526361 -14762301 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 23 54 0 0 chr4 169526906 169526943 -14761719 + AT_rich Low_complexity Low_complexity 1 37 0 668 182 52 32 chr4 169527403 169527557 -14761105 - MLT1B LTR MaLR -233 157 1 1399 234 73 13 chr4 169527661 169528042 -14760620 - MLT1C LTR MaLR -5 462 59 2188 125 3 0 chr4 169528690 169529002 -14759660 + AluSq SINE Alu 1 313 0 653 249 73 29 chr4 169529381 169529626 -14759036 + MER46C DNA MER2_type 83 338 0 1979 163 50 24 chr4 169529656 169530036 -14758626 - MLT1B LTR MaLR 0 390 1 3682 162 16 14 chr4 169530460 169531127 -14757535 + LTR51 LTR ERV1 3 671 0 22 0 0 0 chr4 169531752 169531774 -14756888 + AT_rich Low_complexity Low_complexity 1 22 0 36 40 0 0 chr4 169532200 169532250 -14756412 + AT_rich Low_complexity Low_complexity 1 50 0 3947 246 44 12 chr4 169532256 169533271 -14755391 + L1MC2 LINE L1 18 1065 -5794 24 53 0 0 chr4 169533391 169533429 -14755233 + AT_rich Low_complexity Low_complexity 1 38 0 1999 236 34 47 chr4 169533643 169534250 -14754412 + L1MC2 LINE L1 3478 4027 -2930 1760 194 39 12 chr4 169534250 169534586 -14754076 - MER7A DNA MER2_type 0 346 4 1999 236 34 47 chr4 169534586 169535009 -14753653 + L1MC2 LINE L1 4027 4454 -2503 10197 137 28 6 chr4 169535015 169536684 -14751978 + Tigger2 DNA MER2_type 1 1705 -1013 4752 140 39 37 chr4 169536685 169537059 -14751603 + Tigger2 DNA MER2_type 1854 2226 -492 1953 141 14 0 chr4 169537059 169537350 -14751312 - AluSx SINE Alu -17 295 1 4752 140 39 37 chr4 169537350 169537838 -14750824 + Tigger2 DNA MER2_type 2226 2718 0 5099 220 49 24 chr4 169537838 169538448 -14750214 + L1MC2 LINE L1 4459 5052 -2103 249 33 0 0 chr4 169538448 169538478 -14750184 + (CAA)n Simple_repeat Simple_repeat 1 30 0 5099 220 49 24 chr4 169538478 169539142 -14749520 + L1MC2 LINE L1 5052 5698 -1457 198 0 0 0 chr4 169539142 169539164 -14749498 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 2283 97 0 0 chr4 169539167 169539466 -14749196 + AluY SINE Alu 1 299 -12 5099 220 49 24 chr4 169539466 169540806 -14747856 + L1MC2 LINE L1 5699 7147 -8 963 244 17 23 chr4 169540810 169541154 -14747508 + L1MB7 LINE L1 4252 4593 -1553 766 214 26 7 chr4 169541260 169541414 -14747248 + AluJb SINE Alu 143 299 -13 3084 225 38 19 chr4 169541437 169542071 -14746591 + L1MB7 LINE L1 4947 5614 -570 2149 132 86 27 chr4 169542071 169542479 -14746183 + MSTB1 LTR MaLR 1 432 0 3084 225 38 19 chr4 169542479 169542881 -14745781 + L1MB7 LINE L1 5614 6007 -177 1419 193 14 28 chr4 169542946 169543236 -14745426 + AluJb SINE Alu 3 288 -24 776 236 0 6 chr4 169543264 169543425 -14745237 + FAM SINE Alu 8 167 -18 950 70 0 0 chr4 169543437 169543552 -14745110 + AluSg/x SINE Alu 174 288 -24 372 196 41 10 chr4 169543569 169543870 -14744792 + (TA)n Simple_repeat Simple_repeat 1 310 0 525 313 42 66 chr4 169545680 169546015 -14742647 - MLT1H LTR MaLR 0 549 223 667 273 88 5 chr4 169546055 169546249 -14742413 - MLT1H LTR MaLR -316 233 24 1895 119 45 0 chr4 169546252 169546546 -14742116 - AluSx SINE Alu 0 310 5 243 169 42 0 chr4 169547150 169547221 -14741441 + CT-rich Low_complexity Low_complexity 3 76 0 2209 103 75 17 chr4 169547329 169547677 -14740985 + THE1C LTR MaLR 1 368 -7 23 68 0 0 chr4 169548126 169548170 -14740492 + AT_rich Low_complexity Low_complexity 1 44 0 869 242 11 0 chr4 169548554 169548732 -14739930 - MER5A DNA MER1_type 0 189 10 1344 211 64 68 chr4 169548863 169549086 -14739576 + MLT1D LTR MaLR 21 243 -262 1995 130 7 0 chr4 169549086 169549386 -14739276 + AluSc SINE Alu 1 302 -7 1344 211 64 68 chr4 169549386 169549649 -14739013 + MLT1D LTR MaLR 243 505 0 186 43 0 0 chr4 169549686 169549709 -14738953 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 250 376 32 8 chr4 169549714 169549839 -14738823 - L2 LINE L2 -15 3298 3171 282 274 14 116 chr4 169549971 169550117 -14738545 - L2 LINE L2 -7 3306 3176 690 333 82 30 chr4 169550147 169550646 -14738016 - L2 LINE L2 -515 2799 2275 27 49 0 0 chr4 169550673 169550714 -14737948 + AT_rich Low_complexity Low_complexity 1 41 0 26 0 0 0 chr4 169550752 169550778 -14737884 + AT_rich Low_complexity Low_complexity 1 26 0 1153 227 96 3 chr4 169550940 169551253 -14737409 - MLT1D LTR MaLR 0 505 164 204 222 11 33 chr4 169551279 169551369 -14737293 + GA-rich Low_complexity Low_complexity 3 90 0 618 152 6 43 chr4 169551386 169551550 -14737112 + GA-rich Low_complexity Low_complexity 4 161 0 577 123 17 1 chr4 169551556 169551650 -14737012 + L1MA10 LINE L1 6010 6267 -58 816 231 23 0 chr4 169551664 169551837 -14736825 - MLT1D LTR MaLR -328 177 1 216 329 137 44 chr4 169551877 169552221 -14736441 + L2 LINE L2 1804 2179 -1135 455 301 33 27 chr4 169552351 169552534 -14736128 + MLT1L LTR MaLR 107 290 -325 244 261 200 0 chr4 169552613 169552728 -14735934 + MLT1L LTR MaLR 422 559 -56 248 171 214 0 chr4 169552927 169552997 -14735665 - MER5C DNA MER1_type 0 324 240 264 226 71 24 chr4 169553031 169553115 -14735547 - MER5C DNA MER1_type -201 123 36 2206 76 14 0 chr4 169554118 169554290 -14734372 - AluY SINE Alu -15 296 117 225 0 0 0 chr4 169554290 169554315 -14734347 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2206 76 14 0 chr4 169554315 169554419 -14734243 - AluY SINE Alu -194 117 16 1522 251 101 5 chr4 169554419 169554863 -14733799 + MLT2B1 LTR ERVL 3 534 -20 339 119 0 34 chr4 169554899 169554958 -14733704 + MLT2B1 LTR ERVL 464 520 0 4277 211 68 29 chr4 169554959 169555480 -14733182 + ERVL-B1 LTR ERVL 2 502 -5262 360 0 0 0 chr4 169555480 169555520 -14733142 + (CA)n Simple_repeat Simple_repeat 2 41 0 4277 211 68 29 chr4 169555520 169556047 -14732615 + ERVL-B1 LTR ERVL 502 1173 -4591 1106 224 4 12 chr4 169556051 169556297 -14732365 + AluJo SINE Alu 1 244 -68 8798 193 40 9 chr4 169556313 169558009 -14730653 + ERVL-B1 LTR ERVL 3279 5025 -739 521 110 0 0 chr4 169558017 169558111 -14730551 - AluSg/x SINE Alu 0 300 207 285 51 0 0 chr4 169558191 169558230 -14730432 + (TG)n Simple_repeat Simple_repeat 2 40 0 1290 191 34 30 chr4 169558230 169558528 -14730134 + ERVL-B1 LTR ERVL 5466 5764 0 1572 221 84 44 chr4 169558528 169558947 -14729715 + MLT2B1 LTR ERVL 14 456 -64 415 0 18 18 chr4 169558947 169559003 -14729659 + (TA)n Simple_repeat Simple_repeat 1 56 0 1572 221 84 44 chr4 169559003 169559058 -14729604 + MLT2B1 LTR ERVL 456 507 -13 1272 159 5 18 chr4 169559907 169560127 -14728535 + MER101B LTR ERV1 1 217 -353 742 188 8 0 chr4 169560256 169560384 -14728278 + FLAM_C SINE Alu 6 134 -9 815 128 0 0 chr4 169560384 169560501 -14728161 + AluJb SINE Alu 183 299 -13 2100 99 4 0 chr4 169560687 169560959 -14727703 + AluSc SINE Alu 1 273 -36 1841 189 60 0 chr4 169561307 169561672 -14726990 + MER57A LTR ERV1 1 387 -16 1519 188 42 17 chr4 169563386 169563756 -14724906 - Tigger3(Golem) DNA MER2_type -1 3028 1 418 249 47 112 chr4 169563981 169564258 -14724404 + LTR16A1 LTR ERVL 196 454 -3 580 244 99 30 chr4 169564358 169564559 -14724103 + MIR SINE MIR 27 241 -21 216 273 0 0 chr4 169564592 169564647 -14724015 - MIR SINE MIR -142 120 66 428 192 85 48 chr4 169564878 169565044 -14723618 + MER69A DNA AcHobo 6 177 0 181 271 29 71 chr4 169565235 169565305 -14723357 - L2 LINE L2 -18 3295 3229 953 161 111 5 chr4 169565493 169565710 -14722952 - L1MA4 LINE L1 -70 6230 5991 21 82 0 0 chr4 169565789 169565838 -14722824 + AT_rich Low_complexity Low_complexity 1 49 0 2240 107 10 0 chr4 169566003 169566311 -14722351 - AluSx SINE Alu -1 311 1 2212 211 95 61 chr4 169566420 169567219 -14721443 - LTR1B LTR ERV1 0 826 1 255 61 0 0 chr4 169567574 169567607 -14721055 + (TG)n Simple_repeat Simple_repeat 2 34 0 2054 131 0 3 chr4 169568659 169568956 -14719706 - AluSg SINE Alu -14 296 1 26 30 0 0 chr4 169569507 169569540 -14719122 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr4 169569686 169569717 -14718945 + AT_rich Low_complexity Low_complexity 1 31 0 21 82 0 0 chr4 169570322 169570371 -14718291 + AT_rich Low_complexity Low_complexity 1 49 0 186 43 0 0 chr4 169571531 169571554 -14717108 + (CAA)n Simple_repeat Simple_repeat 2 24 0 645 302 36 18 chr4 169572029 169572254 -14716408 - MIR SINE MIR -14 248 20 454 350 44 15 chr4 169572285 169572488 -14716174 - MIR SINE MIR -18 244 36 401 289 64 43 chr4 169572739 169572926 -14715736 + L2 LINE L2 2286 2476 -838 585 216 23 23 chr4 169573081 169573257 -14715405 + MER96B DNA MER1_type? 4 179 -238 289 282 254 0 chr4 169573608 169573718 -14714944 - MIR SINE MIR -21 241 104 1493 207 3 13 chr4 169573729 169574029 -14714633 + AluJb SINE Alu 1 297 -15 227 311 0 0 chr4 169574076 169574137 -14714525 - MIR SINE MIR -168 94 34 29 47 0 0 chr4 169574361 169574404 -14714258 + AT_rich Low_complexity Low_complexity 1 43 0 2281 88 3 0 chr4 169574474 169574768 -14713894 + AluSp SINE Alu 1 295 -18 216 158 0 0 chr4 169576771 169576809 -14711853 + CT-rich Low_complexity Low_complexity 3 40 0 281 288 36 0 chr4 169577851 169577962 -14710700 - MIR SINE MIR -13 249 135 492 271 83 21 chr4 169578701 169578893 -14709769 + MIR SINE MIR 58 261 -1 22 0 0 0 chr4 169580496 169580518 -14708144 + AT_rich Low_complexity Low_complexity 1 22 0 349 368 7 14 chr4 169580545 169580689 -14707973 - MIR SINE MIR -108 154 12 22 0 0 0 chr4 169581109 169581131 -14707531 + AT_rich Low_complexity Low_complexity 1 22 0 857 226 120 8 chr4 169582022 169582256 -14706406 - Tigger6 DNA MER2_type -776 307 48 3310 191 52 114 chr4 169582378 169583521 -14705141 - Tigger6a DNA MER2_type 0 1083 1 2223 114 76 15 chr4 169583890 169584233 -14704429 - THE1B LTR MaLR 0 364 1 10967 103 17 3 chr4 169584233 169585791 -14702871 - THE1B-int LTR MaLR 0 1580 1 2082 131 76 18 chr4 169585792 169586135 -14702527 - THE1B LTR MaLR -1 363 1 299 281 54 32 chr4 169586143 169586351 -14702311 - L1 LINE L1 -2216 3930 3718 7568 25 0 0 chr4 169586394 169587770 -14700892 - L1PA3 LINE L1 -3 6152 4779 201 328 0 8 chr4 169587988 169588107 -14700555 + T-rich Low_complexity Low_complexity 2 119 0 206 137 20 39 chr4 169589082 169589133 -14699529 + A-rich Low_complexity Low_complexity 2 51 0 1783 218 5 5 chr4 169589588 169589997 -14698665 - L1MB3 LINE L1 -3 6180 5772 4506 187 60 21 chr4 169589997 169591872 -14696790 - L1M4c LINE L1 -4273 2111 19 22 56 0 0 chr4 169592839 169592875 -14695787 + AT_rich Low_complexity Low_complexity 1 36 0 240 327 35 18 chr4 169592885 169592998 -14695664 - MIR SINE MIR -64 144 30 2330 84 0 16 chr4 169593731 169594039 -14694623 + AluY SINE Alu 1 303 -8 278 128 0 21 chr4 169594992 169595039 -14693623 - LTR24B LTR ERV1 -6 570 525 352 122 0 0 chr4 169595041 169595114 -14693548 - Alu SINE Alu 0 306 234 1611 179 3 17 chr4 169595125 169595426 -14693236 - AluJo SINE Alu -15 297 1 2432 198 31 8 chr4 169595429 169595945 -14692717 - LTR24B LTR ERV1 -48 528 1 1468 239 104 20 chr4 169596293 169596733 -14691929 + MLT1H LTR MaLR 51 527 -22 1731 203 48 79 chr4 169596733 169596920 -14691742 + MLT1C LTR MaLR 1 192 -275 2153 120 0 0 chr4 169596920 169597212 -14691450 + AluSq SINE Alu 1 292 -21 1731 203 48 79 chr4 169597212 169597506 -14691156 + MLT1C LTR MaLR 192 467 0 1965 141 16 37 chr4 169597619 169597805 -14690857 - THE1C LTR MaLR 0 375 200 1647 205 33 12 chr4 169597805 169598141 -14690521 + MER61A LTR ERV1 1 343 0 1965 141 16 37 chr4 169598141 169598337 -14690325 - THE1C LTR MaLR -175 200 1 649 224 8 0 chr4 169599926 169600051 -14688611 + FLAM_A SINE Alu 1 126 -7 707 202 8 0 chr4 169601332 169601461 -14687201 + FLAM_C SINE Alu 1 130 -13 196 357 0 24 chr4 169603269 169603353 -14685309 + MIR SINE MIR 41 122 -140 25 51 0 0 chr4 169603546 169603585 -14685077 + AT_rich Low_complexity Low_complexity 1 39 0 1447 192 24 11 chr4 169603990 169604277 -14684385 - AluJo SINE Alu -16 296 6 652 348 59 19 chr4 169605197 169605619 -14683043 + L2 LINE L2 2811 3249 -64 197 179 0 36 chr4 169606342 169606398 -14682264 + (CATATA)n Simple_repeat Simple_repeat 6 59 0 22 80 0 0 chr4 169607244 169607294 -14681368 + AT_rich Low_complexity Low_complexity 1 50 0 260 289 6 77 chr4 169607567 169607723 -14680939 + LTR33 LTR ERVL 307 451 -70 2948 158 8 26 chr4 169607878 169608385 -14680277 + MER61D LTR ERV1 4 501 0 889 233 0 0 chr4 169608928 169609117 -14679545 - MER105 DNA DNA 0 204 16 1347 342 63 42 chr4 169609624 169610352 -14678310 + ERVL LTR ERVL 1540 2310 -3454 264 111 0 0 chr4 169610352 169610397 -14678265 + (CA)n Simple_repeat Simple_repeat 2 46 0 1347 342 63 42 chr4 169610397 169610982 -14677680 + ERVL LTR ERVL 2310 2881 -2883 1243 195 62 98 chr4 169611335 169611816 -14676846 + MLT2C2 LTR ERVL 1 464 0 201 176 0 0 chr4 169611837 169611871 -14676791 + (TA)n Simple_repeat Simple_repeat 2 35 0 285 341 149 52 chr4 169613020 169613269 -14675393 + L2 LINE L2 2977 3249 -23 2988 194 50 38 chr4 169614202 169614918 -14673744 + LTR8A LTR ERV1 1 725 -2 641 231 119 0 chr4 169615390 169615550 -14673112 - MER5A DNA MER1_type -2 187 9 761 206 65 0 chr4 169615566 169615896 -14672766 - MER3 DNA MER1_type 0 2585 2234 399 224 52 43 chr4 169615900 169616016 -14672646 - MER3 DNA MER1_type -57 152 36 196 339 0 0 chr4 169616063 169616119 -14672543 - L2 LINE L2 -6 3307 3252 285 256 98 0 chr4 169616380 169616462 -14672200 + LTR50 LTR ERVL 3 92 -703 288 306 18 0 chr4 169616907 169617018 -14671644 + LTR33A LTR ERVL 411 523 0 1730 273 102 60 chr4 169617488 169618406 -14670256 + L2 LINE L2 1727 2683 -631 559 340 45 5 chr4 169618457 169618657 -14670005 - MIR SINE MIR -52 210 3 308 294 11 33 chr4 169618805 169618897 -14669765 + L2 LINE L2 2945 3034 -279 870 145 55 0 chr4 169618898 169619043 -14669619 + MER2 DNA MER2_type 22 174 -171 275 259 0 0 chr4 169619067 169619121 -14669541 + MER2 DNA MER2_type 291 344 -1 333 296 160 24 chr4 169619122 169619372 -14669290 + L2 LINE L2 3026 3309 -4 212 217 0 43 chr4 169619897 169619966 -14668696 + GA-rich Low_complexity Low_complexity 2 67 0 23 33 0 0 chr4 169621086 169621116 -14667546 + AT_rich Low_complexity Low_complexity 1 30 0 285 58 58 0 chr4 169621966 169622018 -14666644 + GA-rich Low_complexity Low_complexity 1 55 0 29 47 0 0 chr4 169623898 169623941 -14664721 + AT_rich Low_complexity Low_complexity 1 43 0 183 80 0 0 chr4 169625822 169625847 -14662815 + (GA)n Simple_repeat Simple_repeat 1 25 0 252 100 0 0 chr4 169627221 169627261 -14661401 + (TG)n Simple_repeat Simple_repeat 2 41 0 227 374 78 0 chr4 169627275 169627390 -14661272 + L2 LINE L2 3134 3257 -15 355 358 107 19 chr4 169628282 169628497 -14660165 - MIR SINE MIR -1 261 28 562 182 0 0 chr4 169628829 169628928 -14659734 + FLAM_A SINE Alu 1 99 -43 348 267 153 43 chr4 169629140 169629334 -14659328 - MIR3 SINE MIR -46 216 8 214 302 151 36 chr4 169630404 169630543 -14658119 + MIR3 SINE MIR 34 188 -20 22 0 0 0 chr4 169630920 169630942 -14657720 + AT_rich Low_complexity Low_complexity 1 22 0 515 204 30 23 chr4 169631233 169631367 -14657295 + MER21B LTR ERV1 657 854 -77 183 80 0 0 chr4 169631659 169631684 -14656978 + (T)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr4 169632623 169632645 -14656017 + AT_rich Low_complexity Low_complexity 1 22 0 817 152 0 8 chr4 169633058 169633190 -14655472 - FLAM_C SINE Alu -2 131 1 570 260 45 40 chr4 169633395 169633572 -14655090 + MLT1K LTR MaLR 353 530 -58 189 154 0 0 chr4 169634444 169634483 -14654179 + T-rich Low_complexity Low_complexity 5 43 0 1974 103 90 10 chr4 169634800 169635168 -14653494 - LTR7 LTR ERV1 0 450 1 2701 104 14 14 chr4 169635168 169635599 -14653063 - HERVH LTR ERV1 0 7713 7283 7200 105 6 56 chr4 169635603 169636757 -14651905 - HERVH LTR ERV1 -2693 5020 3925 462 82 27 0 chr4 169636757 169636830 -14651832 + Alu SINE Alu 236 310 -2 692 145 8 0 chr4 169636830 169636954 -14651708 - HERVH LTR ERV1 -3778 3935 3811 * 10792 187 55 40 chr4 169636953 169639699 -14648963 - HERVH LTR ERV1 -4127 3586 800 1857 200 47 27 chr4 169639757 169640207 -14648455 - HERVH LTR ERV1 -7254 459 1 1949 120 70 9 chr4 169640208 169640574 -14648088 - LTR7 LTR ERV1 -1 449 1 303 354 24 33 chr4 169641946 169642158 -14646504 + MIR SINE MIR 40 249 -13 2117 122 0 3 chr4 169642340 169642651 -14646011 + AluSg SINE Alu 1 310 0 1935 160 0 13 chr4 169642676 169642983 -14645679 + AluSx SINE Alu 1 303 -9 237 324 62 7 chr4 169642983 169643128 -14645534 - L1ME LINE L1 -446 5675 5523 319 311 72 60 chr4 169643152 169643403 -14645259 + L1ME LINE L1 5509 5762 -359 1479 188 20 27 chr4 169643433 169643726 -14644936 - AluJo SINE Alu -11 301 11 1154 327 82 48 chr4 169644214 169645512 -14643150 - L2 LINE L2 -1100 2214 872 387 275 42 8 chr4 169645565 169645685 -14642977 - L2 LINE L2 -13 3300 3177 2420 274 78 11 chr4 169645787 169646662 -14642000 + L1MEc LINE L1 41 973 -5423 26 30 0 0 chr4 169646675 169646708 -14641954 + AT_rich Low_complexity Low_complexity 1 33 0 232 206 40 87 chr4 169646734 169646781 -14641881 - L1ME LINE L1 -4220 2041 1993 2221 103 3 3 chr4 169646781 169647092 -14641570 - AluY SINE Alu 0 311 1 232 206 40 87 chr4 169647092 169647170 -14641492 - L1ME LINE L1 -4268 1993 1922 24 32 0 0 chr4 169647361 169647392 -14641270 + AT_rich Low_complexity Low_complexity 1 31 0 348 286 34 34 chr4 169647540 169647718 -14640944 - L1ME LINE L1 -4643 1618 1441 665 78 0 0 chr4 169647722 169647812 -14640850 + Alu SINE Alu 220 309 -2 2650 51 0 0 chr4 169647834 169648145 -14640517 + AluY SINE Alu 1 311 0 613 317 23 29 chr4 169648145 169648621 -14640041 - L1ME LINE L1 -4777 1305 833 314 246 62 95 chr4 169648631 169648935 -14639727 - L1ME LINE L1 -5226 844 555 3924 28 0 2 chr4 169649052 169649516 -14639146 - L1PA4 LINE L1 0 6155 5693 1270 37 12 0 chr4 169649516 169649680 -14638982 + L1P LINE L1 5104 5269 -877 621 324 85 36 chr4 169649677 169650124 -14638538 - L1ME LINE L1 -5598 472 4 * 583 304 97 40 chr4 169650128 169650300 -14638362 - L1 LINE L1 -1836 4310 4149 688 249 77 5 chr4 169650300 169650509 -14638153 + MER58A DNA MER1_type 1 224 0 583 304 97 40 chr4 169650509 169650760 -14637902 - L1 LINE L1 -1997 4149 3863 708 293 26 22 chr4 169650762 169650994 -14637668 - LTR16A LTR ERVL 0 450 218 639 294 43 22 chr4 169651187 169651558 -14637104 - L1 LINE L1 -2290 3856 3478 5555 224 77 18 chr4 169651616 169653161 -14635501 + ERVL LTR ERVL 1987 3700 -2064 3612 227 26 12 chr4 169653158 169653961 -14634701 + ERVL LTR ERVL 4694 5507 -257 * 998 290 81 91 chr4 169654211 169655108 -14633554 - L2 LINE L2 -1363 1951 1064 335 316 40 89 chr4 169655255 169655581 -14633081 - L2 LINE L2 -2614 700 391 3362 145 5 45 chr4 169656411 169657040 -14631622 - L1PB3 LINE L1 -2 6152 5549 228 284 27 0 chr4 169657141 169657215 -14631447 - LTR67 LTR ERVL -1 556 481 2080 141 36 33 chr4 169657439 169657802 -14630860 + THE1B LTR MaLR 1 364 0 241 233 217 0 chr4 169657809 169657869 -14630793 - LTR67 LTR ERVL -377 180 108 452 247 134 16 chr4 169658133 169658380 -14630282 + MER113 DNA MER1_type? 28 303 -218 347 287 70 23 chr4 169660023 169660152 -14628510 + MIR SINE MIR 97 231 -31 360 332 171 0 chr4 169660450 169660661 -14628001 - MIR SINE MIR -15 247 1 414 0 0 0 chr4 169660800 169660846 -14627816 + (CA)n Simple_repeat Simple_repeat 2 47 0 214 291 137 0 chr4 169661136 169661253 -14627409 + L2 LINE L2 1890 2022 -1292 180 77 0 0 chr4 169661608 169661634 -14627028 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1502 216 7 4 chr4 169662495 169662773 -14625889 + AluJo SINE Alu 4 282 -30 23 33 0 0 chr4 169663122 169663152 -14625510 + AT_rich Low_complexity Low_complexity 1 30 0 854 381 72 21 chr4 169663580 169664465 -14624197 - L2 LINE L2 -433 2881 1948 562 230 0 0 chr4 169664465 169664591 -14624071 + L1PB4 LINE L1 6026 6151 -5 854 381 72 21 chr4 169664591 169664602 -14624060 - L2 LINE L2 -1366 1948 1939 5261 84 101 1 chr4 169664874 169665625 -14623037 + LTR12 LTR ERV1 1 826 0 5737 21 0 0 chr4 169666094 169666750 -14621912 - L1PA3 LINE L1 -3 6152 5497 955 151 146 0 chr4 169667303 169667522 -14621140 + L1MA7 LINE L1 6039 6289 -2 48 53 0 0 chr4 169667624 169667700 -14620962 + AT_rich Low_complexity Low_complexity 1 76 0 24 0 0 0 chr4 169667773 169667797 -14620865 + AT_rich Low_complexity Low_complexity 1 24 0 192 421 0 0 chr4 169668281 169668388 -14620274 - L2 LINE L2 -237 3035 2929 23 0 0 0 chr4 169668638 169668661 -14620001 + AT_rich Low_complexity Low_complexity 1 23 0 334 265 0 12 chr4 169668944 169669027 -14619635 + L2 LINE L2 2458 2539 -775 300 179 54 0 chr4 169669095 169669151 -14619511 + MLT1E1 LTR MaLR 1 59 -595 243 217 17 0 chr4 169669612 169669672 -14618990 - L1MC4 LINE L1 -1339 6703 6643 1053 269 45 5 chr4 169669690 169670138 -14618524 + MLT1E1 LTR MaLR 92 590 -64 1231 197 32 0 chr4 169670142 169670391 -14618271 - Tigger2 DNA MER2_type 0 2718 2462 4119 168 16 19 chr4 169670458 169671204 -14617458 - Tigger2 DNA MER2_type -1974 744 1 1469 253 27 27 chr4 169671247 169671741 -14616921 + MLT1E1-int LTR MaLR 1 602 -769 788 233 23 198 chr4 169671945 169672405 -14616257 + MLT1E1-int LTR MaLR 692 956 -415 2095 209 24 2 chr4 169672405 169672822 -14615840 + MSTB LTR MaLR 1 426 0 788 233 23 198 chr4 169672822 169673156 -14615506 + MLT1E1-int LTR MaLR 956 1347 -24 1221 225 15 0 chr4 169673169 169673436 -14615226 + MLT1E1 LTR MaLR 2 272 -382 1536 193 12 39 chr4 169673640 169673723 -14614939 - MER49 LTR ERV1 0 923 839 2054 113 3 7 chr4 169673723 169674024 -14614638 - AluSx SINE Alu -12 300 1 1536 193 12 39 chr4 169674024 169674277 -14614385 - MER49 LTR ERV1 -84 839 596 529 179 15 60 chr4 169674319 169674453 -14614209 + MER49 LTR ERV1 543 670 -253 2772 174 6 37 chr4 169674453 169674994 -14613668 - MER49 LTR ERV1 -395 528 5 369 231 123 15 chr4 169674996 169675126 -14613536 + MLT1E1 LTR MaLR 500 643 -11 24 32 0 0 chr4 169675477 169675508 -14613154 + AT_rich Low_complexity Low_complexity 1 31 0 246 178 44 0 chr4 169675788 169675833 -14612829 - MER47A DNA MER2_type 0 366 320 1526 184 4 7 chr4 169675934 169676212 -14612450 - MER47A DNA MER2_type -89 277 1 25 51 0 0 chr4 169676674 169676713 -14611949 + AT_rich Low_complexity Low_complexity 1 39 0 2269 54 3 20 chr4 169677284 169677579 -14611083 - AluY SINE Alu -21 290 1 21 36 0 0 chr4 169677614 169677642 -14611020 + AT_rich Low_complexity Low_complexity 1 28 0 1887 146 0 14 chr4 169677882 169678169 -14610493 - AluSq SINE Alu -30 283 1 2108 117 0 0 chr4 169678329 169678652 -14610010 - AluSg SINE Alu 0 323 1 203 278 139 37 chr4 169678822 169678930 -14609732 + MER5A DNA MER1_type 49 167 -22 239 423 29 12 chr4 169678993 169679239 -14609423 - L2 LINE L2 -626 2688 2439 221 345 20 54 chr4 169679529 169679677 -14608985 - L2 LINE L2 -1447 1867 1725 280 190 25 0 chr4 169683522 169683601 -14605061 + (CATATA)n Simple_repeat Simple_repeat 2 82 0 2265 101 0 0 chr4 169685563 169685859 -14602803 + AluSg SINE Alu 1 296 -14 279 0 0 0 chr4 169685929 169685960 -14602702 + (T)n Simple_repeat Simple_repeat 1 31 0 998 115 0 0 chr4 169686541 169686680 -14601982 - AluSg/x SINE Alu -17 295 157 313 252 144 0 chr4 169686689 169686800 -14601862 + L3b LINE CR1 1249 1375 -208 450 279 34 119 chr4 169687196 169687608 -14601054 + MLT1I LTR MaLR 1 377 -32 33 0 0 0 chr4 169687979 169688012 -14600650 + AT_rich Low_complexity Low_complexity 1 33 0 294 315 115 23 chr4 169688035 169688165 -14600497 - L2 LINE L2 -1 3312 3171 403 305 124 26 chr4 169688166 169688392 -14600270 + MIR SINE MIR 11 258 -4 183 156 0 0 chr4 169688392 169688424 -14600238 + (ATG)n Simple_repeat Simple_repeat 2 33 0 225 374 112 34 chr4 169688499 169688705 -14599957 - L2 LINE L2 -258 3055 2834 2234 99 7 3 chr4 169688778 169689082 -14599580 + AluSx SINE Alu 1 305 -7 1984 133 3 3 chr4 169689206 169689515 -14599147 - AluSc SINE Alu 0 309 1 397 143 0 77 chr4 169689579 169689670 -14598992 + MER3 DNA MER1_type 104 187 -22 422 126 103 11 chr4 169691842 169691929 -14596733 + MER4A LTR ERV1 3 97 -567 1542 151 159 88 chr4 169691930 169692307 -14596355 + MER4A LTR ERV1 261 664 0 215 309 48 0 chr4 169692367 169692451 -14596211 + MIR SINE MIR 106 193 -69 282 56 0 0 chr4 169692828 169692864 -14595798 + (GAAA)n Simple_repeat Simple_repeat 3 38 0 1962 87 14 17 chr4 169693953 169694242 -14594420 - AluY SINE Alu -23 288 1 205 310 17 0 chr4 169694428 169694486 -14594176 - MIR SINE MIR -123 139 81 2871 246 74 23 chr4 169694915 169694978 -14593684 - L1M4 LINE L1 -2237 4407 4349 2380 78 0 3 chr4 169694978 169695285 -14593377 - AluY SINE Alu -5 306 1 2871 246 74 23 chr4 169695285 169695797 -14592865 - L1M4 LINE L1 -2295 4349 3864 1503 178 40 10 chr4 169695797 169696095 -14592567 + AluJb SINE Alu 1 307 -5 2871 246 74 23 chr4 169696095 169696682 -14591980 - L1M4 LINE L1 -2780 3864 3185 668 255 85 0 chr4 169696685 169696897 -14591765 - L1M4 LINE L1 -3700 2944 2715 657 226 19 84 chr4 169696892 169697153 -14591509 - L1M4 LINE L1 -5419 1123 880 * 212 0 36 0 chr4 169697154 169697182 -14591480 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 711 303 58 23 chr4 169697255 169697598 -14591064 - L1M4 LINE L1 -5672 870 516 279 338 61 40 chr4 169697899 169698097 -14590565 - MIR SINE MIR 0 262 61 294 246 16 41 chr4 169698508 169698630 -14590032 + (CATA)n Simple_repeat Simple_repeat 2 120 0 237 296 25 12 chr4 169698681 169698762 -14589900 + L2 LINE L2 3191 3272 0 2129 51 4 15 chr4 169700002 169700276 -14588386 - AluY SINE Alu 0 311 41 215 315 22 22 chr4 169700288 169700380 -14588282 - MER5B DNA MER1_type -62 116 25 1265 227 10 3 chr4 169700961 169701261 -14587401 + L1MB1 LINE L1 5861 6162 -6 21 0 0 0 chr4 169701429 169701450 -14587212 + AT_rich Low_complexity Low_complexity 1 21 0 221 213 21 0 chr4 169702044 169702091 -14586571 + T-rich Low_complexity Low_complexity 2 49 0 2130 108 7 0 chr4 169702255 169702550 -14586112 + AluSg SINE Alu 1 297 -13 345 24 0 0 chr4 169702682 169702724 -14585938 + (TG)n Simple_repeat Simple_repeat 2 43 0 2063 212 61 26 chr4 169702775 169703473 -14585189 - L1MB1 LINE L1 -409 5882 5153 1281 190 30 30 chr4 169703477 169703772 -14584890 + L1MB1 LINE L1 5868 6162 -6 1696 201 42 5 chr4 169703784 169704163 -14584499 + L1MB7 LINE L1 5773 6165 -19 230 328 56 36 chr4 169704271 169704374 -14584288 + L2 LINE L2 3115 3225 -88 261 0 0 0 chr4 169704374 169704403 -14584259 + (TG)n Simple_repeat Simple_repeat 2 30 0 230 328 56 36 chr4 169704403 169704494 -14584168 + L2 LINE L2 3225 3313 0 1038 228 132 59 chr4 169704860 169705592 -14583070 + MER69 DNA AcHobo 493 2524 -2 1997 82 25 11 chr4 169706058 169706375 -14582287 - AluSc SINE Alu 0 309 1 280 337 159 51 chr4 169706503 169707189 -14581473 + L2 LINE L2 1842 2601 -713 196 350 112 14 chr4 169707415 169707558 -14581104 + L2 LINE L2 2869 3025 -247 219 69 0 0 chr4 169710109 169710138 -14578524 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 22 35 0 0 chr4 169711873 169711902 -14576760 + AT_rich Low_complexity Low_complexity 1 29 0 375 323 54 8 chr4 169712495 169712625 -14576037 - L2 LINE L2 0 3272 3137 24 0 0 0 chr4 169714125 169714149 -14574513 + AT_rich Low_complexity Low_complexity 1 24 0 210 309 193 6 chr4 169714468 169714649 -14574013 - MIR SINE MIR -8 254 40 319 353 63 19 chr4 169714690 169714897 -14573765 - MIR SINE MIR -25 237 22 486 307 7 0 chr4 169715497 169715634 -14573028 + MER63A DNA MER1_type 58 195 -15 665 294 67 76 chr4 169715712 169716147 -14572515 + L2 LINE L2 2881 3311 -2 1977 141 7 0 chr4 169717241 169717538 -14571124 + AluSq SINE Alu 1 299 -14 441 183 32 12 chr4 169718210 169718324 -14570338 + MLT2D LTR ERVL 1 92 -322 956 235 99 124 chr4 169718453 169718846 -14569816 + MLT2D LTR ERVL 1 331 -83 270 0 0 0 chr4 169718846 169718876 -14569786 + (TC)n Simple_repeat Simple_repeat 2 31 0 956 235 99 124 chr4 169718876 169718958 -14569704 + MLT2D LTR ERVL 331 414 0 6326 190 36 10 chr4 169719072 169720256 -14568406 + ERVL LTR ERVL 3699 4913 -851 1567 178 70 75 chr4 169720447 169720863 -14567799 - MLT2D LTR ERVL 0 414 1 238 250 141 43 chr4 169720876 169720968 -14567694 - MIR SINE MIR -113 149 49 246 81 0 0 chr4 169721694 169721731 -14566931 + (TA)n Simple_repeat Simple_repeat 2 38 0 36 70 0 0 chr4 169722043 169722114 -14566548 + AT_rich Low_complexity Low_complexity 1 71 0 200 328 0 30 chr4 169723040 169723174 -14565488 + GA-rich Low_complexity Low_complexity 3 132 0 2165 115 13 0 chr4 169723933 169724238 -14564424 + AluSp SINE Alu 3 311 -2 1962 167 77 20 chr4 169724396 169724798 -14563864 + MSTA LTR MaLR 1 425 -3 4415 184 45 47 chr4 169724901 169725854 -14562808 + L1MCa LINE L1 5 955 -5471 2090 155 93 14 chr4 169726119 169726602 -14562060 + L1MCa LINE L1 942 1462 -4964 585 247 0 43 chr4 169726605 169726791 -14561871 + L1MCa LINE L1 2703 2880 -3546 8489 244 39 21 chr4 169726908 169727456 -14561206 + L1MCa LINE L1 2861 3397 -3029 527 226 61 9 chr4 169727456 169727571 -14561091 + FLAM_A SINE Alu 1 121 -12 8489 244 39 21 chr4 169727571 169729754 -14558908 + L1MCa LINE L1 3397 5642 -784 11731 156 33 38 chr4 169729754 169730992 -14557670 + Tigger4(Zombi) DNA MER2_type 1 1225 -1506 2629 42 0 0 chr4 169730992 169731303 -14557359 - AluY SINE Alu 0 311 1 11731 156 33 38 chr4 169731303 169732284 -14556378 + Tigger4(Zombi) DNA MER2_type 1225 2209 -522 1608 152 108 181 chr4 169732284 169733054 -14555608 - LTR12 LTR ERV1 0 714 1 508 122 174 0 chr4 169733055 169733153 -14555509 + Tigger4(Zombi) DNA MER2_type 2207 2321 -410 1785 154 3 0 chr4 169733153 169733438 -14555224 + L1MC1 LINE L1 6047 6332 -1 1246 186 60 28 chr4 169733801 169734285 -14554377 - L1 LINE L1 -3779 2549 2049 5483 179 15 4 chr4 169734295 169735760 -14552902 + L1PA16 LINE L1 4678 6157 -9 4363 240 52 11 chr4 169735778 169737735 -14550927 - L1 LINE L1 -4065 1263 14 211 329 35 12 chr4 169737936 169738021 -14550641 - L2 LINE L2 -36 3236 3150 230 353 29 0 chr4 169738141 169738243 -14550419 + MER91A DNA MER1_type 49 153 -43 1268 223 39 11 chr4 169738411 169738693 -14549969 + AluJo SINE Alu 1 290 -22 223 357 0 0 chr4 169739230 169739286 -14549376 + L3 LINE CR1 208 263 -1314 333 353 36 6 chr4 169739291 169739458 -14549204 + MIR SINE MIR 5 176 -86 249 346 75 66 chr4 169739639 169739854 -14548808 + L3 LINE CR1 628 849 -728 2010 122 30 0 chr4 169739854 169740150 -14548512 + AluSp SINE Alu 3 307 -6 249 346 75 66 chr4 169740150 169740266 -14548396 + L3 LINE CR1 849 962 -615 188 283 0 0 chr4 169740389 169740435 -14548227 + L2 LINE L2 3257 3302 -11 700 178 8 23 chr4 169740438 169740567 -14548095 + FLAM_C SINE Alu 2 128 -5 15560 96 5 14 chr4 169740736 169743856 -14544806 - L1PA7 LINE L1 -3 6151 3101 337 209 0 0 chr4 169744193 169744260 -14544402 - AluS SINE Alu -4 298 232 5054 67 3 0 chr4 169744341 169744984 -14543678 + HERVL-A1 LTR ERVL 5010 5654 0 2878 72 74 10 chr4 169744984 169745360 -14543302 + MLT2A1 LTR ERVL 1 408 -36 396 0 0 0 chr4 169745360 169745404 -14543258 + (TA)n Simple_repeat Simple_repeat 2 45 0 2878 72 74 10 chr4 169745404 169745444 -14543218 + MLT2A1 LTR ERVL 408 444 0 23 0 0 0 chr4 169745526 169745549 -14543113 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr4 169745801 169745830 -14542832 + AT_rich Low_complexity Low_complexity 1 29 0 328 273 31 17 chr4 169746460 169746591 -14542071 + HAL1b LINE L1 420 1635 -817 657 218 0 8 chr4 169746794 169746927 -14541735 + FLAM_C SINE Alu 1 132 -1 2917 164 22 0 chr4 169747132 169747638 -14541024 - L1PA13 LINE L1 -14 6149 5633 24 96 0 0 chr4 169747715 169747788 -14540874 + AT_rich Low_complexity Low_complexity 1 73 0 362 311 73 18 chr4 169747847 169748242 -14540420 + L1M4 LINE L1 2133 2549 -3597 217 355 33 41 chr4 169748510 169748631 -14540031 + L2 LINE L2 3153 3272 0 5456 122 10 37 chr4 169748657 169749367 -14539295 + L1PA13 LINE L1 5220 5900 -263 2278 216 70 17 chr4 169749367 169749969 -14538693 + LTR27 LTR ERV1 3 636 0 5456 122 10 37 chr4 169749969 169750223 -14538439 + L1PA13 LINE L1 5900 6159 -4 25 90 0 0 chr4 169750685 169750752 -14537910 + AT_rich Low_complexity Low_complexity 1 67 0 191 287 35 11 chr4 169752389 169752476 -14536186 - MIR SINE MIR -141 121 33 593 268 22 0 chr4 169752987 169753125 -14535537 - MER5A DNA MER1_type -2 187 47 299 340 14 48 chr4 169754847 169754994 -14533668 - MIR3 SINE MIR -64 144 3 372 22 0 0 chr4 169755000 169755045 -14533617 + (TG)n Simple_repeat Simple_repeat 2 46 0 3860 200 40 13 chr4 169755053 169756244 -14532418 - L1PB4 LINE L1 -10 6146 4935 260 306 167 7 chr4 169756877 169757021 -14531641 + L2 LINE L2 8 174 -3140 684 290 121 29 chr4 169757021 169757369 -14531293 - L2 LINE L2 -869 2445 2066 441 301 77 86 chr4 169757383 169757887 -14530775 + L2 LINE L2 2629 3143 -170 2088 116 3 7 chr4 169757887 169758180 -14530482 - AluSp SINE Alu -19 294 3 441 301 77 86 chr4 169758180 169758303 -14530359 + L2 LINE L2 3143 3266 -47 3144 164 25 3 chr4 169758736 169759304 -14529358 - LTR22 LTR ERVK 0 580 1 22 0 0 0 chr4 169759506 169759528 -14529134 + AT_rich Low_complexity Low_complexity 1 22 0 275 358 0 32 chr4 169759739 169759862 -14528800 + MER5A DNA MER1_type 40 158 -31 364 213 11 14 chr4 169760738 169760842 -14527820 + L1ME3A LINE L1 6057 6159 -3 23 0 0 0 chr4 169760899 169760922 -14527740 + AT_rich Low_complexity Low_complexity 1 23 0 1437 211 79 61 chr4 169762447 169762941 -14525721 - MLT1D LTR MaLR -2 503 1 2635 45 0 0 chr4 169763732 169764043 -14524619 - AluY SINE Alu 0 311 1 25 75 0 0 chr4 169764369 169764422 -14524240 + AT_rich Low_complexity Low_complexity 1 53 0 217 230 54 40 chr4 169765182 169765256 -14523406 + MER5C DNA MER1_type 1 75 -249 516 282 52 47 chr4 169765301 169765450 -14523212 + MLT1H1 LTR MaLR 3 113 -442 1901 62 0 12 chr4 169765450 169765690 -14522972 + AluSp SINE Alu 76 312 -1 516 282 52 47 chr4 169765690 169765855 -14522807 + MLT1H1 LTR MaLR 113 276 -279 255 316 101 42 chr4 169765927 169766095 -14522567 + MLT1H1 LTR MaLR 327 504 -51 591 268 145 0 chr4 169766165 169766344 -14522318 - MER58A DNA MER1_type -16 208 4 21 36 0 0 chr4 169766995 169767023 -14521639 + AT_rich Low_complexity Low_complexity 1 28 0 48 32 0 0 chr4 169767823 169767885 -14520777 + AT_rich Low_complexity Low_complexity 1 62 0 737 199 84 84 chr4 169768010 169768307 -14520355 + LTR16C LTR ERVL 178 474 -17 187 278 83 65 chr4 169768512 169768620 -14520042 + MIR3 SINE MIR 94 203 -5 285 29 0 0 chr4 169768794 169768828 -14519834 + (TA)n Simple_repeat Simple_repeat 2 35 0 346 321 73 79 chr4 169769036 169769569 -14519093 + L2 LINE L2 2554 3080 -233 219 69 0 0 chr4 169769712 169769741 -14518921 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 21 0 0 0 chr4 169770571 169770592 -14518070 + AT_rich Low_complexity Low_complexity 1 21 0 766 217 48 10 chr4 169772697 169772916 -14515746 + MER61D LTR ERV1 338 501 0 287 345 8 8 chr4 169773387 169773506 -14515156 + GA-rich Low_complexity Low_complexity 2 120 0 1721 209 0 3 chr4 169773937 169774248 -14514414 + AluJb SINE Alu 1 310 -2 2275 179 16 12 chr4 169774966 169775390 -14513272 + MSTB LTR MaLR 1 426 0 452 214 103 0 chr4 169776713 169776830 -14511832 - MER119 DNA MER1_type 0 583 455 330 294 109 0 chr4 169776853 169776945 -14511717 - MER119 DNA MER1_type -481 102 1 1800 129 27 37 chr4 169777493 169777787 -14510875 + AluSx SINE Alu 7 297 -15 549 301 29 29 chr4 169778204 169778413 -14510249 + MIR SINE MIR 52 260 -2 28 29 0 0 chr4 169778518 169778553 -14510109 + AT_rich Low_complexity Low_complexity 1 35 0 374 255 199 69 chr4 169778911 169778970 -14509692 - MIR SINE MIR -14 248 198 1913 134 33 0 chr4 169778970 169779305 -14509357 - L1MA4A LINE L1 -3 6300 5955 374 255 199 69 chr4 169779305 169779461 -14509201 - MIR SINE MIR -64 198 5 449 241 21 7 chr4 169779772 169779913 -14508749 - L1MA10 LINE L1 -1 6333 6191 4395 227 60 11 chr4 169779943 169781368 -14507294 - L1M4 LINE L1 -2104 4042 2524 1002 287 17 7 chr4 169781373 169781787 -14506875 - L1M4 LINE L1 -873 5273 4856 475 269 33 16 chr4 169781802 169781984 -14506678 - L1M4 LINE L1 -2489 3657 3473 483 220 22 0 chr4 169782128 169782219 -14506443 + FRAM SINE Alu 1 92 -84 1866 234 54 12 chr4 169782220 169782720 -14505942 + LTR27 LTR ERV1 7 1229 -141 8351 118 36 5 chr4 169782734 169783981 -14504681 - HERVL-A2 LTR ERVL -4368 1286 1 2278 97 38 191 chr4 169783981 169784515 -14504147 - MLT2A2 LTR ERVL 0 453 2 9046 182 55 22 chr4 169784515 169787333 -14501329 + LTR27-int LTR ERV1 1237 5217 0 2537 194 24 27 chr4 169787334 169787988 -14500674 + LTR27 LTR ERV1 3 709 -130 28 0 0 0 chr4 169788071 169788099 -14500563 + AT_rich Low_complexity Low_complexity 1 28 0 212 358 42 36 chr4 169788253 169788418 -14500244 + MIR3 SINE MIR 14 179 -29 404 67 17 0 chr4 169789242 169789258 -14499404 + (TG)n Simple_repeat Simple_repeat 1 77 0 404 67 17 0 chr4 169789258 169789318 -14499344 + (TG)n Simple_repeat Simple_repeat 2 62 0 25 0 0 0 chr4 169789942 169789967 -14498695 + AT_rich Low_complexity Low_complexity 1 25 0 1966 138 0 41 chr4 169790311 169790631 -14498031 + AluSx SINE Alu 2 308 -4 21 0 0 0 chr4 169791286 169791307 -14497355 + AT_rich Low_complexity Low_complexity 1 21 0 297 51 0 0 chr4 169792522 169792561 -14496101 + (CA)n Simple_repeat Simple_repeat 2 40 0 25 31 0 0 chr4 169793251 169793283 -14495379 + AT_rich Low_complexity Low_complexity 1 32 0 315 132 0 0 chr4 169793317 169793385 -14495277 + (TA)n Simple_repeat Simple_repeat 2 69 0 24 0 0 0 chr4 169794887 169794911 -14493751 + AT_rich Low_complexity Low_complexity 1 24 0 640 280 13 36 chr4 169795225 169795450 -14493212 + L2 LINE L2 3094 3313 0 471 48 0 0 chr4 169797361 169797423 -14491239 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 204 311 29 29 chr4 169799185 169799288 -14489374 + MIR SINE MIR 38 140 -122 1572 185 15 77 chr4 169800471 169800606 -14488056 + MLT1A1 LTR MaLR 1 143 -222 2736 16 3 3 chr4 169800606 169800921 -14487741 + AluYb8 SINE Alu 1 315 -3 1572 185 15 77 chr4 169800921 169801124 -14487538 + MLT1A1 LTR MaLR 143 315 -50 1836 161 7 7 chr4 169801124 169801428 -14487234 + AluSx SINE Alu 1 304 -8 1572 185 15 77 chr4 169801428 169801477 -14487185 + MLT1A1 LTR MaLR 315 365 0 416 296 68 0 chr4 169802407 169802539 -14486123 + MIR SINE MIR 72 212 -50 587 298 54 61 chr4 169803412 169803691 -14484971 - MLT1H1 LTR MaLR -31 524 248 775 310 66 0 chr4 169803742 169803968 -14484694 - MLT1H1 LTR MaLR -310 245 5 2238 136 22 14 chr4 169804106 169804467 -14484195 - THE1B LTR MaLR 0 364 1 314 296 6 34 chr4 169805255 169805434 -14483228 + CT-rich Low_complexity Low_complexity 2 175 0 2442 178 55 36 chr4 169805640 169805693 -14482969 - MLT2B2 LTR ERVL 0 515 465 3321 103 32 74 chr4 169805693 169806317 -14482345 + MER4A LTR ERV1 3 600 0 1198 245 77 12 chr4 169806326 169806649 -14482013 + MER2 DNA MER2_type 1 344 0 2442 178 55 36 chr4 169806649 169807090 -14481572 - MLT2B2 LTR ERVL -57 458 1 579 255 20 7 chr4 169807399 169807548 -14481114 - FRAM SINE Alu -15 151 1 21 57 0 0 chr4 169807743 169807778 -14480884 + AT_rich Low_complexity Low_complexity 1 35 0 241 321 9 19 chr4 169808982 169809088 -14479574 + MER5B DNA MER1_type 5 109 -69 573 300 12 54 chr4 169809298 169809538 -14479124 - MIR SINE MIR 0 262 33 21 57 0 0 chr4 169810273 169810308 -14478354 + AT_rich Low_complexity Low_complexity 1 35 0 235 175 95 48 chr4 169811226 169811289 -14477373 - MLT1E2 LTR MaLR -560 66 1 189 94 0 0 chr4 169812127 169812159 -14476503 + (T)n Simple_repeat Simple_repeat 1 32 0 24 32 0 0 chr4 169812709 169812740 -14475922 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr4 169812794 169812819 -14475843 + AT_rich Low_complexity Low_complexity 1 25 0 386 333 51 42 chr4 169813772 169814009 -14474653 + MIR SINE MIR 18 256 -6 207 0 0 0 chr4 169814511 169814534 -14474128 + (CA)n Simple_repeat Simple_repeat 2 24 0 2294 53 0 11 chr4 169814673 169815000 -14473662 - AluY SINE Alu 0 324 1 261 0 0 0 chr4 169815641 169815670 -14472992 + (CA)n Simple_repeat Simple_repeat 1 29 0 * 405 0 0 0 chr4 169815669 169815714 -14472948 + (TC)n Simple_repeat Simple_repeat 1 45 0 244 344 140 60 chr4 169816825 169817807 -14470855 - L2 LINE L2 -218 3054 1969 2128 108 0 10 chr4 169817807 169818102 -14470560 + AluSx SINE Alu 5 296 -16 244 344 140 60 chr4 169818102 169818257 -14470405 - L2 LINE L2 -1303 1969 1828 813 317 62 15 chr4 169818322 169818660 -14470002 - LTR16A LTR ERVL 0 450 97 1067 363 61 28 chr4 169819251 169820652 -14468010 - HERV16 LTR ERVL -616 4869 3427 1726 197 55 17 chr4 169820652 169820698 -14467964 - MER67B LTR ERV1 0 661 618 2010 137 7 0 chr4 169820698 169821004 -14467658 + AluSx SINE Alu 3 310 -2 1726 197 55 17 chr4 169821004 169821318 -14467344 - MER67B LTR ERV1 -43 618 287 535 362 27 0 chr4 169821321 169821542 -14467120 - HERV16 LTR ERVL -2138 2858 2632 324 0 0 0 chr4 169821613 169821649 -14467013 + (CA)n Simple_repeat Simple_repeat 1 36 0 1617 299 61 24 chr4 169821670 169821920 -14466742 - HERV16 LTR ERVL -2567 2429 2190 1015 261 73 39 chr4 169821920 169822303 -14466359 - MSTD LTR MaLR 0 396 1 1617 299 61 24 chr4 169822303 169822811 -14465851 - HERV16 LTR ERVL -2806 2190 1709 1327 210 133 3 chr4 169822858 169823220 -14465442 + MLT1C LTR MaLR 59 467 0 311 387 42 28 chr4 169823362 169823579 -14465083 - HERV16 LTR ERVL -4165 1599 1380 430 286 176 0 chr4 169824101 169824283 -14464379 - HERV16 LTR ERVL -4782 214 1 510 298 121 27 chr4 169824288 169824598 -14464064 - LTR16A LTR ERVL -5 459 95 231 378 39 16 chr4 169824672 169824799 -14463863 + L2 LINE L2 3179 3308 -5 1897 127 173 14 chr4 169824835 169825204 -14463458 + MSTA LTR MaLR 1 428 0 193 360 48 27 chr4 169825332 169825479 -14463183 - MIR SINE MIR -98 164 15 284 333 42 25 chr4 169825487 169825607 -14463055 + MIR SINE MIR 16 137 -71 21 0 0 0 chr4 169826359 169826380 -14462282 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chr4 169827438 169827469 -14461193 + AT_rich Low_complexity Low_complexity 1 31 0 1877 123 9 41 chr4 169827469 169827787 -14460875 - AluSc SINE Alu -1 308 1 1089 214 82 53 chr4 169827919 169828298 -14460364 - MLT1B LTR MaLR 0 390 1 667 363 43 13 chr4 169828322 169828790 -14459872 - ERVL LTR ERVL -657 5107 4626 619 379 38 15 chr4 169828925 169829397 -14459265 - ERVL LTR ERVL -965 4520 4038 380 340 80 36 chr4 169829474 169829961 -14458701 - ERVL LTR ERVL -1705 3949 3414 366 159 32 0 chr4 169830093 169830156 -14458506 + MLT1A2 LTR MaLR 1 65 -309 1173 229 36 49 chr4 169830320 169830625 -14458037 + MLT1A2 LTR MaLR 74 374 0 186 43 0 0 chr4 169831321 169831344 -14457318 + (TC)n Simple_repeat Simple_repeat 2 24 0 649 329 81 44 chr4 169831349 169831966 -14456696 - ERVL LTR ERVL -3119 2535 1896 3414 207 32 39 chr4 169832352 169833216 -14455446 + L1MC3 LINE L1 6506 7363 -422 1978 206 35 5 chr4 169833227 169833596 -14455066 + L1 LINE L1 1421 1800 -5765 478 143 0 20 chr4 169833582 169833725 -14454937 + L1 LINE L1 5563 5785 -1780 * 403 129 0 0 chr4 169833727 169833789 -14454873 - AluS SINE Alu -246 62 1 660 208 46 46 chr4 169833789 169833986 -14454676 + L1MC3 LINE L1 7576 7772 -13 3862 168 3 1 chr4 169836728 169837389 -14451273 + L1PA15 LINE L1 5501 6162 -3 269 125 38 12 chr4 169837541 169837621 -14451041 + (TA)n Simple_repeat Simple_repeat 2 83 0 306 0 0 0 chr4 169839732 169839766 -14448896 + (TG)n Simple_repeat Simple_repeat 1 34 0 249 33 0 0 chr4 169840064 169840094 -14448568 + (CA)n Simple_repeat Simple_repeat 2 31 0 209 309 101 30 chr4 169841302 169841470 -14447192 - MIR SINE MIR -12 250 71 212 340 50 10 chr4 169841661 169841761 -14446901 - MIR SINE MIR -2 260 157 285 284 58 37 chr4 169842233 169842561 -14446101 + L1MEc LINE L1 1269 1465 -4919 352 326 38 16 chr4 169842569 169842753 -14445909 + L1MEc LINE L1 2353 2540 -4023 325 294 10 71 chr4 169842818 169843015 -14445647 + MER46C DNA MER2_type 5 189 -149 1028 234 60 0 chr4 169843018 169843253 -14445409 + Tigger7 DNA MER2_type 3 251 -482 1096 162 0 0 chr4 169843253 169843426 -14445236 - FRAM SINE Alu -8 168 1 463 228 22 0 chr4 169843426 169843518 -14445144 + Tigger7 DNA MER2_type 246 339 -2148 665 214 43 7 chr4 169843520 169843660 -14445002 + Tigger7 DNA MER2_type 2341 2485 -2 273 250 15 0 chr4 169843766 169843834 -14444828 + MLT1I LTR MaLR 68 136 -273 1635 150 22 47 chr4 169844648 169844968 -14443694 - AluSx SINE Alu 0 312 1 30 0 0 0 chr4 169845197 169845227 -14443435 + AT_rich Low_complexity Low_complexity 1 30 0 236 385 28 22 chr4 169845847 169846026 -14442636 - L2 LINE L2 -2872 442 263 247 374 77 20 chr4 169846973 169847219 -14441443 + MIR SINE MIR 3 262 0 309 294 186 26 chr4 169848320 169848551 -14440111 - L1 LINE L1 -2180 3966 3699 301 306 18 0 chr4 169848608 169848719 -14439943 - L1 LINE L1 -2523 3623 3511 24 53 0 0 chr4 169848719 169848757 -14439905 + AT_rich Low_complexity Low_complexity 1 38 0 195 20 0 137 chr4 169848757 169848808 -14439854 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 286 311 55 44 chr4 169849215 169849649 -14439013 - L1 LINE L1 -2787 3359 2921 27 29 0 0 chr4 169849878 169849912 -14438750 + AT_rich Low_complexity Low_complexity 1 34 0 198 0 0 0 chr4 169850165 169850187 -14438475 + (T)n Simple_repeat Simple_repeat 1 22 0 1317 222 25 104 chr4 169850309 169850407 -14438255 + L1M4 LINE L1 3690 3794 -2352 2051 145 3 0 chr4 169850407 169850704 -14437958 + AluSx SINE Alu 1 298 -14 2734 22 0 0 chr4 169850706 169851017 -14437645 + AluY SINE Alu 1 311 0 1317 222 25 104 chr4 169851017 169851424 -14437238 + L1M4 LINE L1 3795 4158 -1988 24 32 0 0 chr4 169851542 169851573 -14437089 + AT_rich Low_complexity Low_complexity 1 31 0 27 29 0 0 chr4 169851626 169851660 -14437002 + AT_rich Low_complexity Low_complexity 1 34 0 198 0 0 0 chr4 169851914 169851936 -14436726 + (T)n Simple_repeat Simple_repeat 1 22 0 5309 234 27 29 chr4 169852053 169852156 -14436506 + L1MB8 LINE L1 3679 3781 -2393 2051 145 3 0 chr4 169852156 169852453 -14436209 + AluSx SINE Alu 1 298 -14 2734 22 0 0 chr4 169852455 169852766 -14435896 + AluY SINE Alu 1 311 0 5309 234 27 29 chr4 169852766 169854812 -14433850 + L1MB8 LINE L1 3782 5825 -349 252 299 0 0 chr4 169854812 169854879 -14433783 + FLAM_A SINE Alu 40 106 -27 1486 191 42 39 chr4 169854879 169855138 -14433524 + L1MB8 LINE L1 5822 6084 -94 1920 197 11 3 chr4 169855138 169855498 -14433164 - MER47A DNA MER2_type -3 363 1 1486 191 42 39 chr4 169855498 169855594 -14433068 + L1MB8 LINE L1 6084 6178 0 222 37 0 0 chr4 169856091 169856118 -14432544 + (CA)n Simple_repeat Simple_repeat 2 28 0 24 77 0 0 chr4 169856475 169856527 -14432135 + AT_rich Low_complexity Low_complexity 1 52 0 1685 215 37 6 chr4 169856582 169856936 -14431726 - MLT1A1 LTR MaLR 0 365 1 409 310 62 0 chr4 169856986 169857131 -14431531 - MIR SINE MIR -72 190 37 1554 34 0 0 chr4 169857620 169857799 -14430863 + AluYb8 SINE Alu 132 310 -8 1596 199 0 3 chr4 169857884 169858176 -14430486 + AluJo SINE Alu 3 293 -19 22 56 0 0 chr4 169858177 169858213 -14430449 + AT_rich Low_complexity Low_complexity 1 36 0 206 0 69 0 chr4 169858780 169858809 -14429853 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 1861 88 4 0 chr4 169858812 169859051 -14429611 - AluSp SINE Alu -30 283 44 29 98 0 0 chr4 169859365 169859457 -14429205 + AT_rich Low_complexity Low_complexity 1 92 0 24 53 0 0 chr4 169859698 169859736 -14428926 + AT_rich Low_complexity Low_complexity 1 38 0 1620 215 0 0 chr4 169859737 169860039 -14428623 - AluJb SINE Alu -4 308 7 1993 141 0 0 chr4 169860708 169861037 -14427625 - AluSq SINE Alu 0 329 1 426 328 64 60 chr4 169861603 169862039 -14426623 + L1ME4a LINE L1 5458 5895 -226 35 41 0 0 chr4 169862417 169862466 -14426196 + AT_rich Low_complexity Low_complexity 1 49 0 372 88 0 0 chr4 169862513 169862570 -14426092 + (TG)n Simple_repeat Simple_repeat 2 58 0 1216 122 0 0 chr4 169862609 169862781 -14425881 - AluSq SINE Alu -19 294 123 29 28 0 0 chr4 169864061 169864097 -14424565 + AT_rich Low_complexity Low_complexity 1 36 0 3186 251 45 19 chr4 169864546 169865973 -14422689 + L1MCb LINE L1 -54 1417 -4851 8779 208 61 14 chr4 169865995 169870108 -14418554 + L1MA4 LINE L1 3303 7714 -5 484 157 48 36 chr4 169870104 169870383 -14418279 + L1MCb LINE L1 1630 1904 -4480 * 1763 163 7 10 chr4 169870383 169870683 -14417979 + AluSx SINE Alu 5 303 -9 484 157 48 36 chr4 169870683 169871011 -14417651 + L1MCb LINE L1 1904 2394 -3990 1902 138 0 18 chr4 169871011 169871287 -14417375 + AluSx SINE Alu 5 275 -37 484 157 48 36 chr4 169871287 169871395 -14417267 + L1MCb LINE L1 2394 2499 -3885 514 200 0 0 chr4 169871398 169871493 -14417169 + AluSg/x SINE Alu 133 227 -85 7409 254 55 26 chr4 169871507 169872419 -14416243 + L1MCb LINE L1 2546 3430 -2952 189 0 0 0 chr4 169872419 169872440 -14416222 + (TTAA)n Simple_repeat Simple_repeat 2 22 0 7409 254 55 26 chr4 169872440 169874231 -14414431 + L1MCb LINE L1 3430 5329 -1053 261 0 0 0 chr4 169874231 169874260 -14414402 + (T)n Simple_repeat Simple_repeat 1 29 0 261 0 0 0 chr4 169875113 169875142 -14413520 + (T)n Simple_repeat Simple_repeat 1 29 0 1436 198 35 24 chr4 169875142 169875538 -14413124 + L1M3 LINE L1 5324 5726 -693 1744 156 0 0 chr4 169875538 169875821 -14412841 + AluSx SINE Alu 30 312 0 1436 198 35 24 chr4 169875821 169875876 -14412786 + L1M3 LINE L1 5726 5779 -640 2695 88 118 0 chr4 169875877 169876277 -14412385 + MER41A LTR ERV1 1 447 -107 1202 109 0 22 chr4 169876285 169876469 -14412193 - AluY SINE Alu 0 311 132 409 310 62 0 chr4 169876958 169877103 -14411559 + MIR SINE MIR 37 190 -72 1685 215 37 6 chr4 169877153 169877507 -14411155 + MLT1A1 LTR MaLR 1 365 0 24 77 0 0 chr4 169877562 169877614 -14411048 + AT_rich Low_complexity Low_complexity 1 52 0 222 37 0 0 chr4 169877971 169877998 -14410664 + (TG)n Simple_repeat Simple_repeat 2 28 0 1486 191 42 39 chr4 169878495 169878591 -14410071 - L1MB8 LINE L1 0 6178 6084 1920 197 11 3 chr4 169878591 169878951 -14409711 + MER47A DNA MER2_type 1 363 -3 1486 191 42 39 chr4 169878951 169879210 -14409452 - L1MB8 LINE L1 -94 6084 5822 252 299 0 0 chr4 169879210 169879277 -14409385 - FLAM_A SINE Alu -27 106 40 3086 239 24 10 chr4 169879277 169880677 -14407985 - L1MB8 LINE L1 -349 5825 4403 2357 77 0 3 chr4 169880778 169881075 -14407587 + AluSp SINE Alu 1 296 -17 309 308 108 8 chr4 169881170 169881300 -14407362 + L1M4 LINE L1 2425 2567 -3579 487 300 12 38 chr4 169881376 169881399 -14407263 + L1MB3 LINE L1 5357 5379 -783 2154 111 13 0 chr4 169881399 169881697 -14406965 + AluSp SINE Alu 1 302 -11 487 300 12 38 chr4 169881697 169881886 -14406776 + L1MB3 LINE L1 5379 5564 -598 394 242 51 57 chr4 169882594 169882706 -14405956 + MIR SINE MIR 31 143 -119 2032 100 55 0 chr4 169882706 169882997 -14405665 + AluY SINE Alu 1 307 -4 394 242 51 57 chr4 169882997 169883041 -14405621 + MIR SINE MIR 143 186 -76 617 298 88 0 chr4 169883238 169883443 -14405219 + MIR SINE MIR 8 230 -32 560 223 20 47 chr4 169884075 169884223 -14404439 - MER58B DNA MER1_type 0 341 198 688 154 0 34 chr4 169884224 169884341 -14404321 + AluJb SINE Alu 3 115 -197 1044 208 4 39 chr4 169884456 169884711 -14403951 + L1MB3 LINE L1 5543 5788 -395 3474 47 5 7 chr4 169884711 169885160 -14403502 + LTR7 LTR ERV1 1 448 -2 18701 94 39 6 chr4 169885162 169887956 -14400706 + HERVH LTR ERV1 1 2885 -4828 2178 102 44 0 chr4 169887971 169888313 -14400349 + HERVH LTR ERV1 7322 7678 -35 1695 80 0 8 chr4 169888413 169888652 -14400010 + LTR7 LTR ERV1 212 448 -2 1732 181 39 13 chr4 169888655 169888689 -14399973 + L1MB3 LINE L1 5785 5817 -366 5248 77 18 32 chr4 169888689 169889466 -14399196 - MER4E LTR ERV1 0 766 1 1732 181 39 13 chr4 169889466 169889817 -14398845 + L1MB3 LINE L1 5817 6180 -3 453 301 86 21 chr4 169890215 169890401 -14398261 - MIR SINE MIR -12 250 53 241 329 12 0 chr4 169890412 169890494 -14398168 - MIR SINE MIR -179 83 1 210 346 17 0 chr4 169890642 169890735 -14397927 + MIR SINE MIR 49 144 -64 2510 272 50 13 chr4 169890915 169891007 -14397655 + L1MCa LINE L1 2246 2333 -4093 1966 109 46 0 chr4 169891007 169891290 -14397372 + AluSp SINE Alu 6 301 -12 2510 272 50 13 chr4 169891290 169893662 -14395000 + L1MCa LINE L1 2333 4877 -1549 1411 271 45 32 chr4 169893667 169894196 -14394466 + L1MCa LINE L1 4944 5491 -961 2528 36 0 3 chr4 169894196 169894501 -14394161 + AluY SINE Alu 1 304 -7 1411 271 45 32 chr4 169894501 169894721 -14393941 + L1MCa LINE L1 5491 5707 -745 * 4234 210 58 47 chr4 169894717 169894978 -14393684 - L1M4 LINE L1 -524 5660 5403 255 31 0 0 chr4 169894978 169895010 -14393652 + (TG)n Simple_repeat Simple_repeat 2 33 0 4234 210 58 47 chr4 169895010 169896290 -14392372 - L1M4 LINE L1 -781 5403 4105 791 254 109 50 chr4 169897418 169897777 -14390885 - L2 LINE L2 0 3313 2934 2185 106 3 0 chr4 169897798 169898101 -14390561 + AluSg SINE Alu 1 304 -6 47 53 0 0 chr4 169898144 169898219 -14390443 + AT_rich Low_complexity Low_complexity 1 75 0 25 118 0 0 chr4 169898483 169898627 -14390035 + AT_rich Low_complexity Low_complexity 1 144 0 326 352 60 14 chr4 169899027 169899311 -14389351 + L2 LINE L2 2678 2974 -340 234 172 23 46 chr4 169899327 169899414 -14389248 + (TTATA)n Simple_repeat Simple_repeat 1 85 0 459 0 0 0 chr4 169899420 169899471 -14389191 + (TAGA)n Simple_repeat Simple_repeat 3 53 0 397 313 42 42 chr4 169899475 169899734 -14388928 + L2 LINE L2 2995 3253 -60 22 56 0 0 chr4 169900350 169900386 -14388276 + AT_rich Low_complexity Low_complexity 1 36 0 319 228 26 26 chr4 169900600 169900714 -14387948 + MER104 DNA Tc2 23 136 -44 217 222 12 25 chr4 169900795 169900876 -14387786 + A-rich Low_complexity Low_complexity 4 83 0 2081 204 62 0 chr4 169901498 169901899 -14386763 + Tigger4(Zombi) DNA MER2_type 3 428 -2303 516 151 0 12 chr4 169901912 169901998 -14386664 + Tigger4(Zombi) DNA MER2_type 2647 2731 0 445 354 33 5 chr4 169902794 169903006 -14385656 - MIR SINE MIR -6 256 39 617 263 148 14 chr4 169903751 169903960 -14384702 + MIR SINE MIR 6 242 -20 243 308 28 56 chr4 169904190 169904333 -14384329 - MER5A DNA MER1_type -50 139 1 1973 136 0 31 chr4 169904334 169904651 -14384011 - AluSx SINE Alu -4 308 2 291 28 0 0 chr4 169905088 169905124 -14383538 + (CA)n Simple_repeat Simple_repeat 2 37 0 1825 150 0 49 chr4 169905762 169906088 -14382574 + AluSg SINE Alu 1 310 0 32 67 0 0 chr4 169907137 169907197 -14381465 + AT_rich Low_complexity Low_complexity 1 60 0 535 250 72 26 chr4 169907670 169907822 -14380840 + MIR SINE MIR 87 245 -17 24 53 0 0 chr4 169908005 169908043 -14380619 + AT_rich Low_complexity Low_complexity 1 38 0 271 288 0 15 chr4 169908230 169908296 -14380366 - L2 LINE L2 -5 3308 3244 250 297 0 59 chr4 169908237 169908355 -14380307 - MIR SINE MIR -5 257 147 * 1035 123 12 0 chr4 169908403 169908573 -14380089 - L1MA8 LINE L1 -3 6288 6117 1070 142 44 19 chr4 169908573 169908778 -14379884 + L1MA8 LINE L1 5839 6048 -243 349 222 33 0 chr4 169908880 169908970 -14379692 - L1M2 LINE L1 -837 5454 5362 233 121 0 52 chr4 169908971 169909029 -14379633 + (TA)n Simple_repeat Simple_repeat 2 56 0 455 178 6 38 chr4 169909041 169909198 -14379464 + (TA)n Simple_repeat Simple_repeat 1 152 0 7042 186 37 7 chr4 169909201 169910679 -14377983 - L1M2 LINE L1 -762 5384 3863 526 297 46 70 chr4 169911421 169911680 -14376982 - MLT1J LTR MaLR -160 351 99 1891 130 0 27 chr4 169911822 169912123 -14376539 - AluSq SINE Alu -20 293 1 23 0 0 0 chr4 169913552 169913575 -14375087 + AT_rich Low_complexity Low_complexity 1 23 0 2474 326 151 25 chr4 169913736 169916112 -14372550 - L2 LINE L2 -218 3095 19 2039 112 0 35 chr4 169916294 169916606 -14372056 - AluSg SINE Alu -9 301 1 632 281 32 0 chr4 169917407 169917592 -14371070 - MIR SINE MIR -24 238 48 203 224 0 30 chr4 169919107 169919174 -14369488 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 419 262 49 33 chr4 169919481 169919603 -14369059 + L2 LINE L2 3184 3307 -6 2125 108 3 0 chr4 169919747 169920043 -14368619 + AluSp SINE Alu 1 297 -16 413 192 192 13 chr4 169920605 169920761 -14367901 - MER5C DNA MER1_type -1 323 140 21 36 0 0 chr4 169921828 169921856 -14366806 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 169922838 169922859 -14365803 + AT_rich Low_complexity Low_complexity 1 21 0 278 337 12 12 chr4 169922962 169923045 -14365617 + L2 LINE L2 3186 3268 -4 2861 89 89 0 chr4 169923313 169923729 -14364933 - MLT2A2 LTR ERVL 0 453 1 290 248 25 16 chr4 169923811 169923932 -14364730 + (TATAA)n Simple_repeat Simple_repeat 4 125 0 184 143 0 41 chr4 169924868 169924917 -14363745 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 350 97 8 19 chr4 169925158 169925405 -14363257 + AluY SINE Alu 1 301 0 1318 301 61 46 chr4 169925777 169926693 -14361969 - HAL1 LINE L1 0 2507 1578 594 269 136 38 chr4 169926859 169927123 -14361539 - MLT1J LTR MaLR -13 498 209 264 316 102 70 chr4 169927636 169928079 -14360583 - HAL1 LINE L1 -2049 458 2 204 40 0 0 chr4 169929486 169929511 -14359151 + (A)n Simple_repeat Simple_repeat 1 25 0 604 254 142 28 chr4 169929970 169929997 -14358665 + MLT1E2 LTR MaLR 10 33 -591 3094 146 50 53 chr4 169929997 169930560 -14358102 + MER41B LTR ERV1 1 563 -72 2642 29 0 13 chr4 169930560 169930875 -14357787 - AluYa5 SINE Alu 0 311 1 3094 146 50 53 chr4 169930875 169930948 -14357714 + MER41B LTR ERV1 563 635 0 604 254 142 28 chr4 169930948 169931386 -14357276 + MLT1E2 LTR MaLR 33 623 -1 40 87 0 0 chr4 169932132 169932235 -14356427 + AT_rich Low_complexity Low_complexity 1 103 0 200 180 0 20 chr4 169932299 169932349 -14356313 + A-rich Low_complexity Low_complexity 2 50 0 2418 199 87 7 chr4 169932983 169933567 -14355095 - L1MC3 LINE L1 0 7785 7155 816 216 14 28 chr4 169933570 169933783 -14354879 + L1MC3 LINE L1 6943 7152 -633 247 186 43 29 chr4 169933864 169933934 -14354728 + L1MEc LINE L1 1306 1376 -5020 22 99 0 0 chr4 169935625 169935696 -14352966 + AT_rich Low_complexity Low_complexity 1 71 0 24 0 0 0 chr4 169935955 169935979 -14352683 + AT_rich Low_complexity Low_complexity 1 24 0 1984 116 51 0 chr4 169936516 169936809 -14351853 + AluSx SINE Alu 1 308 -4 413 321 74 50 chr4 169940735 169941152 -14347510 + MER115 DNA AcHobo 184 690 -3 841 279 92 28 chr4 169941162 169941620 -14347042 - HsTC2 DNA Tc2 -3 1895 1233 207 259 0 19 chr4 169941849 169941903 -14346759 + CT-rich Low_complexity Low_complexity 3 55 0 2200 156 49 12 chr4 169942361 169942772 -14345890 + MSTB LTR MaLR 1 426 0 780 179 104 29 chr4 169943070 169943243 -14345419 - L1MC/D LINE L1 -494 5984 5799 1263 259 92 47 chr4 169943249 169943759 -14344903 + MLT1E1 LTR MaLR 6 538 -116 339 245 20 88 chr4 169943781 169943928 -14344734 + MER77 LTR ERV1 66 202 -403 * 512 220 89 132 chr4 169943896 169944224 -14344438 + MER21B LTR ERV1 98 433 -172 934 109 14 0 chr4 169944243 169944390 -14344272 + L1PA13 LINE L1 6014 6162 -1 27 29 0 0 chr4 169944396 169944430 -14344232 + AT_rich Low_complexity Low_complexity 1 34 0 219 139 0 0 chr4 169944448 169944484 -14344178 + (A)n Simple_repeat Simple_repeat 1 36 0 587 274 47 72 chr4 169944486 169944763 -14343899 + MER21B LTR ERV1 408 677 -186 422 132 99 11 chr4 169944812 169944903 -14343759 + MLT1E1 LTR MaLR 554 652 -2 657 200 36 68 chr4 169944904 169945028 -14343634 - L1MC/D LINE L1 -792 5803 5687 1885 186 28 30 chr4 169945028 169945425 -14343237 - MSTD LTR MaLR 0 396 1 657 200 36 68 chr4 169945425 169945520 -14343142 - L1MC/D LINE L1 -908 5687 5591 * 1459 255 98 60 chr4 169945518 169945929 -14342733 - L1MC/D LINE L1 -1021 5361 4967 2286 101 0 0 chr4 169945929 169946226 -14342436 - AluSx SINE Alu -15 297 1 1459 255 98 60 chr4 169946226 169946781 -14341881 - L1MC/D LINE L1 -1415 4967 4358 504 242 79 34 chr4 169946797 169947202 -14341460 - L1MC/D LINE L1 -3613 2769 2253 229 115 19 19 chr4 169947242 169947294 -14341368 + GA-rich Low_complexity Low_complexity 1 52 0 460 319 36 5 chr4 169947296 169947708 -14340954 - L1MC/D LINE L1 -4329 2234 1787 378 363 12 6 chr4 169947813 169947973 -14340689 - L1MC/D LINE L1 -4936 1448 1288 283 344 8 16 chr4 169947985 169948113 -14340549 - L1MC/D LINE L1 -6141 422 296 522 368 39 13 chr4 169948392 169948626 -14340036 + L2 LINE L2 2100 2339 -975 241 153 17 17 chr4 169948632 169948691 -14339971 + GA-rich Low_complexity Low_complexity 2 60 0 237 388 6 44 chr4 169949129 169949289 -14339373 + L2 LINE L2 2837 2990 -323 521 214 99 148 chr4 169949979 169950494 -14338168 - L1MC5 LINE L1 -261 7700 7211 467 245 141 25 chr4 169951765 169951928 -14336734 - MER101B LTR ERV1 -388 182 1 25 0 0 0 chr4 169952061 169952086 -14336576 + AT_rich Low_complexity Low_complexity 1 25 0 733 197 7 7 chr4 169952977 169953119 -14335543 + FRAM SINE Alu 22 163 -13 2614 171 63 14 chr4 169953271 169953838 -14334824 + LTR49 LTR ERV1 1 595 0 1252 140 44 107 chr4 169953980 169954252 -14334410 + AluJo SINE Alu 39 293 -19 22 0 0 0 chr4 169954722 169954744 -14333918 + AT_rich Low_complexity Low_complexity 1 22 0 1920 147 43 25 chr4 169954750 169955118 -14333544 + THE1C LTR MaLR 1 375 0 372 333 82 16 chr4 169955300 169955603 -14333059 - L1MC4a LINE L1 -1884 5924 5602 28 0 0 0 chr4 169955895 169955923 -14332739 + AT_rich Low_complexity Low_complexity 1 28 0 1537 289 58 22 chr4 169956735 169957372 -14331290 - L1MCc LINE L1 -4890 1533 874 301 333 13 0 chr4 169957663 169957741 -14330921 - L1MCc LINE L1 -5975 448 370 791 258 25 43 chr4 169958197 169958519 -14330143 + L1MCc LINE L1 1208 1523 -4900 722 286 86 14 chr4 169958783 169959159 -14329503 - MLT1F1 LTR MaLR -83 484 52 192 422 17 6 chr4 169959472 169959652 -14329010 + L2 LINE L2 1819 2000 -1314 325 325 123 19 chr4 169960226 169960380 -14328282 + MIR SINE MIR 1 170 -92 349 74 37 25 chr4 169960637 169960718 -14327944 + (TA)n Simple_repeat Simple_repeat 1 82 0 188 170 19 0 chr4 169960832 169960885 -14327777 + T-rich Low_complexity Low_complexity 2 55 0 286 245 88 59 chr4 169960989 169961091 -14327571 + L3 LINE CR1 607 711 -866 5073 235 124 63 chr4 169961273 169963126 -14325536 + L1MD1 LINE L1 26 2024 -4516 2401 68 3 7 chr4 169963126 169963434 -14325228 + AluY SINE Alu 3 309 -2 5073 235 124 63 chr4 169963434 169963835 -14324827 + L1MD1 LINE L1 2024 2399 -4141 1284 250 16 54 chr4 169963840 169964231 -14324431 - MLT1B LTR MaLR -2 388 11 5417 260 29 32 chr4 169964241 169966584 -14322078 + L1MD1 LINE L1 3461 5809 -827 1496 165 8 38 chr4 169966584 169966886 -14321776 + AluJb SINE Alu 25 318 0 5417 260 29 32 chr4 169966886 169967637 -14321025 + L1MD1 LINE L1 5809 6556 -80 2201 64 4 0 chr4 169967637 169967943 -14320719 + AluY SINE Alu 2 308 0 5417 260 29 32 chr4 169967943 169968024 -14320638 + L1MD1 LINE L1 6556 6636 0 2957 231 59 40 chr4 169968002 169968674 -14319988 + L1M4 LINE L1 4518 5219 -1321 * 486 0 0 0 chr4 169968674 169968728 -14319934 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 2957 231 59 40 chr4 169968728 169969111 -14319551 + L1M4 LINE L1 5219 5593 -947 858 231 19 5 chr4 169969110 169969326 -14319336 + L1MB3 LINE L1 4657 4875 -1271 * 3111 195 52 25 chr4 169969371 169970104 -14318558 + L1MB3 LINE L1 5423 6175 -8 354 294 57 18 chr4 169970147 169970375 -14318287 + L1MC4 LINE L1 7396 7632 -410 280 185 0 25 chr4 169970810 169970891 -14317771 + (TATG)n Simple_repeat Simple_repeat 2 80 0 21 0 0 0 chr4 169972103 169972124 -14316538 + AT_rich Low_complexity Low_complexity 1 21 0 234 91 0 0 chr4 169972367 169972400 -14316262 + (CA)n Simple_repeat Simple_repeat 2 34 0 207 360 49 74 chr4 169972640 169972911 -14315751 - L2 LINE L2 -594 2720 2441 22 0 0 0 chr4 169972911 169972933 -14315729 + AT_rich Low_complexity Low_complexity 1 22 0 207 360 49 74 chr4 169972933 169973071 -14315591 - L2 LINE L2 -873 2441 2301 2335 98 0 0 chr4 169973262 169973569 -14315093 - AluSc SINE Alu -2 307 1 374 234 55 23 chr4 169974881 169975009 -14313653 - MIR SINE MIR -57 205 74 907 278 41 23 chr4 169976568 169976913 -14311749 - L1ME3A LINE L1 -12 6158 5808 352 199 23 137 chr4 169976915 169977046 -14311616 + MER3 DNA MER1_type 11 126 -83 1151 118 21 32 chr4 169977152 169977215 -14311447 - AluSx SINE Alu -20 292 230 2311 114 30 25 chr4 169977215 169977611 -14311051 + MER48 LTR ERV1 1 398 0 1151 118 21 32 chr4 169977611 169977733 -14310929 - AluSx SINE Alu -82 230 109 34 84 0 0 chr4 169977734 169977817 -14310845 + AT_rich Low_complexity Low_complexity 1 83 0 743 94 0 0 chr4 169977828 169977934 -14310728 - AluSx SINE Alu -206 106 1 570 265 101 21 chr4 169977937 169978224 -14310438 - L1ME3A LINE L1 -478 5692 5383 1785 225 48 0 chr4 169978230 169978670 -14309992 + L1MC3 LINE L1 7315 7775 -10 5571 139 56 5 chr4 169980014 169981317 -14307345 - L1PA13 LINE L1 -1 6162 4777 554 352 75 32 chr4 169981526 169981963 -14306699 + MLT1K LTR MaLR 47 502 -86 1568 161 34 88 chr4 169982099 169982485 -14306177 + MLT1A1 LTR MaLR 1 365 0 960 172 73 9 chr4 169985507 169985780 -14302882 - L1MB5 LINE L1 -678 5496 5210 2992 207 24 12 chr4 169985782 169986449 -14302213 + L1MB5 LINE L1 5498 6172 -2 883 250 29 0 chr4 169986931 169987135 -14301527 + MER58A DNA MER1_type 2 211 -13 2191 97 3 3 chr4 169987891 169988190 -14300472 - AluSp SINE Alu -14 299 1 25 0 0 0 chr4 169988807 169988832 -14299830 + AT_rich Low_complexity Low_complexity 1 25 0 467 332 66 18 chr4 169988939 169989379 -14299283 - L1ME3A LINE L1 -205 5965 5505 3779 210 83 16 chr4 169989822 169991472 -14297190 - L1MA7 LINE L1 -4 7247 5425 3378 260 74 36 chr4 169991468 169995108 -14293554 - L1MA7 LINE L1 -2414 4692 1034 * 34 55 0 0 chr4 169995712 169995767 -14292895 + AT_rich Low_complexity Low_complexity 1 55 0 22 0 0 0 chr4 169996292 169996314 -14292348 + AT_rich Low_complexity Low_complexity 1 22 0 934 350 101 42 chr4 169996334 169996975 -14291687 - L2 LINE L2 -2 3311 2585 2574 93 6 0 chr4 169996975 169997328 -14291334 - THE1A LTR MaLR 0 355 1 934 350 101 42 chr4 169997328 169997675 -14290987 - L2 LINE L2 -728 2585 2260 330 67 0 0 chr4 169997679 169997724 -14290938 + (CA)n Simple_repeat Simple_repeat 2 46 0 329 344 88 40 chr4 169998065 169998338 -14290324 - HAL1 LINE L1 -875 1632 1347 1146 197 28 97 chr4 169998358 169998748 -14289914 - MLT1A1 LTR MaLR 0 365 3 21 0 0 0 chr4 169998759 169998780 -14289882 + AT_rich Low_complexity Low_complexity 1 21 0 940 345 48 5 chr4 169998852 169999246 -14289416 + MLT1G1 LTR MaLR 16 426 -169 23 86 0 0 chr4 169999404 169999462 -14289200 + AT_rich Low_complexity Low_complexity 1 58 0 32 0 0 0 chr4 169999559 169999591 -14289071 + AT_rich Low_complexity Low_complexity 1 32 0 288 133 0 0 chr4 170000684 170000729 -14287933 + L2 LINE L2 3268 3312 -1 190 265 0 0 chr4 170000915 170000964 -14287698 - L2 LINE L2 0 3313 3265 2129 102 0 7 chr4 170000982 170001287 -14287375 - AluSc SINE Alu 0 303 1 25 0 0 0 chr4 170003376 170003401 -14285261 + AT_rich Low_complexity Low_complexity 1 25 0 23 68 0 0 chr4 170003630 170003674 -14284988 + AT_rich Low_complexity Low_complexity 1 44 0 357 360 113 9 chr4 170004417 170004639 -14284023 + MIR SINE MIR 18 262 0 26 50 0 0 chr4 170004663 170004703 -14283959 + AT_rich Low_complexity Low_complexity 1 40 0 181 313 151 31 chr4 170006227 170006419 -14282243 + L2 LINE L2 1861 2075 -1239 1307 186 145 7 chr4 170006525 170006821 -14281841 + MER1B DNA MER1_type 1 337 0 574 313 116 15 chr4 170006840 170007169 -14281493 + MLT1L LTR MaLR 168 529 -86 2074 102 10 3 chr4 170007538 170007831 -14280831 - AluSg SINE Alu -15 295 1 342 379 25 70 chr4 170008069 170008354 -14280308 - L2 LINE L2 0 3272 3001 2303 56 3 38 chr4 170008635 170008954 -14279708 + AluY SINE Alu 3 310 -1 947 289 107 22 chr4 170009064 170009156 -14279506 - MLT1J LTR MaLR 0 511 428 216 0 0 0 chr4 170009156 170009180 -14279482 + (TA)n Simple_repeat Simple_repeat 1 24 0 947 289 107 22 chr4 170009180 170009544 -14279118 - MLT1J LTR MaLR -83 428 16 2446 238 95 35 chr4 170010056 170010250 -14278412 + L1MDa LINE L1 2367 2548 -3992 2254 106 0 6 chr4 170010250 170010562 -14278100 + AluSx SINE Alu 1 310 -2 2446 238 95 35 chr4 170010562 170010599 -14278063 + L1MDa LINE L1 2548 2581 -3959 2382 45 6 29 chr4 170010599 170010911 -14277751 + AluY SINE Alu 1 305 -6 2446 238 95 35 chr4 170010911 170011984 -14276678 + L1MDa LINE L1 2581 3748 -2792 2283 208 98 33 chr4 170011977 170012640 -14276022 + L1MD2 LINE L1 5632 6337 -22 * 206 229 0 0 chr4 170014615 170014663 -14273999 + (ATG)n Simple_repeat Simple_repeat 3 50 0 409 329 52 24 chr4 170014684 170014894 -14273768 - MIR SINE MIR -16 246 31 1804 104 74 24 chr4 170017290 170017587 -14271075 + AluSx SINE Alu 1 312 0 40591 64 6 3 chr4 170018232 170018603 -14270059 - L1PA5 LINE L1 -7 6147 5779 2751 25 0 0 chr4 170018603 170018918 -14269744 - AluYb8 SINE Alu -3 315 1 40591 64 6 3 chr4 170018918 170024661 -14264001 - L1PA5 LINE L1 -375 5779 11 41 78 0 0 chr4 170024684 170024774 -14263888 + AT_rich Low_complexity Low_complexity 1 90 0 1810 326 74 14 chr4 170025221 170025982 -14262680 + L2 LINE L2 6 811 -2503 1630 230 37 7 chr4 170026009 170026417 -14262245 + MER119 DNA MER1_type 88 507 -76 1047 321 184 18 chr4 170026570 170027213 -14261449 + L2 LINE L2 834 1369 -1945 1567 182 24 24 chr4 170027213 170027510 -14261152 + AluJo SINE Alu 1 297 -15 1047 321 184 18 chr4 170027510 170027769 -14260893 + L2 LINE L2 1369 1970 -1344 35 41 0 0 chr4 170028796 170028845 -14259817 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr4 170029836 170029860 -14258802 + AT_rich Low_complexity Low_complexity 1 24 0 470 319 91 29 chr4 170030282 170030492 -14258170 - MIR SINE MIR -3 259 37 183 42 0 0 chr4 170030646 170030670 -14257992 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 210 229 57 21 chr4 170031821 170031961 -14256701 + (TA)n Simple_repeat Simple_repeat 2 146 0 22 35 0 0 chr4 170033084 170033113 -14255549 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 170034274 170034302 -14254360 + AT_rich Low_complexity Low_complexity 1 28 0 2351 155 10 2 chr4 170034991 170035391 -14253271 - MER57A LTR ERV1 0 403 1 2275 102 7 0 chr4 170035689 170035992 -14252670 - AluSq SINE Alu -5 308 4 254 277 42 25 chr4 170036354 170036473 -14252189 - L1MC3 LINE L1 -1616 6169 6049 1675 214 172 49 chr4 170036507 170037199 -14251463 - LTR1B LTR ERV1 -49 777 1 909 285 64 11 chr4 170037203 170037561 -14251101 - L1ME1 LINE L1 -125 6041 5665 772 277 86 3 chr4 170037567 170037892 -14250770 + L1M4 LINE L1 2227 2578 -3568 3398 109 12 16 chr4 170037907 170038422 -14250240 + MER75 DNA T2_type 1 513 -1 864 236 98 58 chr4 170038431 170038758 -14249904 + MLT1C LTR MaLR 18 357 -110 1593 193 64 77 chr4 170038800 170039163 -14249499 + MER74C LTR ERVL 1 358 -102 1946 139 16 32 chr4 170039163 170039479 -14249183 - AluSx SINE Alu -1 311 1 1593 193 64 77 chr4 170039479 170039581 -14249081 + MER74C LTR ERVL 358 460 0 1280 226 126 9 chr4 170039581 170040123 -14248539 + L1MD3 LINE L1 6154 7787 0 765 208 47 7 chr4 170040099 170040319 -14248343 + L1MD3 LINE L1 7557 7994 -1 * 623 223 44 48 chr4 170040329 170040535 -14248127 - L1M4 LINE L1 -1286 4860 4656 663 266 117 35 chr4 170040545 170041086 -14247576 - L1MEc LINE L1 -4233 2163 1579 410 196 23 23 chr4 170041087 170041220 -14247442 + CT-rich Low_complexity Low_complexity 3 135 0 952 101 0 43 chr4 170041220 170041408 -14247254 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1645 163 34 43 chr4 170041743 170042092 -14246570 - MER4A LTR ERV1 -317 347 2 225 203 51 0 chr4 170043130 170043209 -14245453 + (TA)n Simple_repeat Simple_repeat 2 84 0 233 313 16 0 chr4 170043406 170043470 -14245192 - L2 LINE L2 -1 3312 3248 1864 118 18 7 chr4 170043863 170044135 -14244527 + AluSx SINE Alu 1 275 -37 240 35 0 0 chr4 170044141 170044170 -14244492 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 25 0 0 0 chr4 170044396 170044421 -14244241 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr4 170045377 170045398 -14243264 + AT_rich Low_complexity Low_complexity 1 21 0 231 306 32 0 chr4 170046456 170046518 -14242144 + MIR SINE MIR 87 150 -112 333 289 78 28 chr4 170046547 170046689 -14241973 + LTR50 LTR ERVL 325 473 -322 27 29 0 0 chr4 170046859 170046893 -14241769 + AT_rich Low_complexity Low_complexity 1 34 0 39 60 0 0 chr4 170048159 170048226 -14240436 + AT_rich Low_complexity Low_complexity 1 67 0 323 231 11 27 chr4 170048728 170048923 -14239739 + CT-rich Low_complexity Low_complexity 1 191 0 461 291 50 39 chr4 170049100 170049282 -14239380 + MIR SINE MIR 66 249 -13 402 273 186 22 chr4 170051780 170052011 -14236651 + MLT1L LTR MaLR 200 468 -147 292 239 30 54 chr4 170053769 170053936 -14234726 + L1MEd LINE L1 1047 1209 -4910 2058 120 14 0 chr4 170055130 170055254 -14233408 + AluSq SINE Alu 3 124 -189 405 0 0 0 chr4 170055254 170055299 -14233363 + (CA)n Simple_repeat Simple_repeat 2 46 0 2058 120 14 0 chr4 170055299 170055457 -14233205 + AluSq SINE Alu 124 289 -24 25 31 0 0 chr4 170055457 170055489 -14233173 + AT_rich Low_complexity Low_complexity 1 32 0 1953 249 63 37 chr4 170056255 170056874 -14231788 + L1MDa LINE L1 19 653 -5887 381 279 209 30 chr4 170057087 170057288 -14231374 + L1MDa LINE L1 663 899 -5641 1862 147 0 23 chr4 170057364 170057664 -14230998 - AluSx SINE Alu -19 293 1 1507 184 43 7 chr4 170057911 170058189 -14230473 - AluJo SINE Alu -24 288 1 412 314 61 60 chr4 170058617 170059008 -14229654 - MLT1J2 LTR MaLR -8 426 39 24 53 0 0 chr4 170059206 170059244 -14229418 + AT_rich Low_complexity Low_complexity 1 38 0 2088 118 7 0 chr4 170059244 170059532 -14229130 + AluSg SINE Alu 1 290 -20 220 301 14 0 chr4 170059656 170059729 -14228933 - L2 LINE L2 -8 3305 3232 22 0 0 0 chr4 170060755 170060777 -14227885 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 170061673 170061695 -14226967 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 170062412 170062433 -14226229 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr4 170062599 170062630 -14226032 + AT_rich Low_complexity Low_complexity 1 31 0 502 327 25 35 chr4 170063187 170063389 -14225273 - MLT1I LTR MaLR -112 297 98 6413 51 0 0 chr4 170064168 170064965 -14223697 - L1PA5 LINE L1 -3913 2233 1437 24589 45 6 2 chr4 170064965 170068834 -14219828 + L1PA5 LINE L1 2259 6149 -5 261 0 0 0 chr4 170068834 170068863 -14219799 + (TA)n Simple_repeat Simple_repeat 1 29 0 708 296 38 58 chr4 170071371 170071770 -14216892 - L2 LINE L2 -1654 1660 1270 616 305 120 25 chr4 170072014 170072381 -14216281 - MLT1H LTR MaLR 0 549 148 578 304 92 48 chr4 170072463 170072878 -14215784 + L2 LINE L2 2514 2946 -368 283 320 125 0 chr4 170073036 170073164 -14215498 + L2 LINE L2 2968 3111 -202 417 302 45 45 chr4 170073170 170073392 -14215270 - MIR SINE MIR -26 236 15 416 315 61 18 chr4 170073451 170073616 -14215046 - MIR SINE MIR -90 172 1 181 357 29 0 chr4 170073915 170073985 -14214677 + L2 LINE L2 3186 3257 -15 252 0 0 0 chr4 170074542 170074570 -14214092 + (CA)n Simple_repeat Simple_repeat 1 28 0 1509 124 0 0 chr4 170075109 170075326 -14213336 + AluSp SINE Alu 93 309 -4 374 285 71 45 chr4 170075865 170076131 -14212531 - L1ME3 LINE L1 -287 5877 5607 604 264 35 94 chr4 170076214 170076532 -14212130 + MLT1I LTR MaLR 93 391 -18 2129 119 0 0 chr4 170076602 170076888 -14211774 - AluSx SINE Alu -26 286 1 333 355 104 17 chr4 170077068 170077480 -14211182 - L1ME3 LINE L1 -1151 4995 4550 233 87 0 22 chr4 170078024 170078070 -14210592 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 30 0 0 0 chr4 170078350 170078380 -14210282 + AT_rich Low_complexity Low_complexity 1 30 0 216 0 0 0 chr4 170079216 170079240 -14209422 + (TA)n Simple_repeat Simple_repeat 2 25 0 25 31 0 0 chr4 170080010 170080042 -14208620 + AT_rich Low_complexity Low_complexity 1 32 0 201 121 0 0 chr4 170080793 170080826 -14207836 + (TTG)n Simple_repeat Simple_repeat 1 33 0 437 265 197 7 chr4 170082019 170082166 -14206496 - MER5A DNA MER1_type -6 183 9 2036 121 0 0 chr4 170083054 170083364 -14205298 - AluSx SINE Alu 0 314 5 24 32 0 0 chr4 170083414 170083445 -14205217 + AT_rich Low_complexity Low_complexity 1 31 0 943 319 121 35 chr4 170083969 170084480 -14204182 + L2 LINE L2 1 555 -2759 385 315 188 19 chr4 170084791 170085216 -14203446 + L1ME3 LINE L1 5454 5950 -212 2138 169 13 51 chr4 170085275 170085656 -14203006 + Tigger2a DNA MER2_type 1 364 -2344 1916 156 20 0 chr4 170085656 170085957 -14202705 + AluSx SINE Alu 1 307 -5 2138 169 13 51 chr4 170085957 170086024 -14202638 + Tigger2a DNA MER2_type 364 432 -2 1083 226 21 62 chr4 170086257 170086597 -14202065 - MLT1D LTR MaLR 0 505 180 974 241 30 0 chr4 170086611 170086843 -14201819 - MLT1D LTR MaLR -264 241 3 2111 309 78 36 chr4 170086857 170088370 -14200292 + L2 LINE L2 1732 3306 -7 1221 236 83 9 chr4 170088376 170088724 -14199938 - MLT1A2 LTR MaLR 0 374 1 1645 165 48 7 chr4 170088843 170089134 -14199528 + AluJo SINE Alu 1 303 -9 1262 208 0 16 chr4 170089495 170089740 -14198922 + AluJo SINE Alu 1 241 -71 216 186 0 0 chr4 170089740 170089799 -14198863 + A-rich Low_complexity Low_complexity 1 59 0 26 0 0 0 chr4 170089799 170089825 -14198837 + AT_rich Low_complexity Low_complexity 1 26 0 629 292 157 35 chr4 170090219 170090857 -14197805 + MER45C DNA AcHobo 1 772 -181 1286 251 40 3 chr4 170090960 170091286 -14197376 + MER45B DNA AcHobo 702 1039 -1 2089 226 51 12 chr4 170091286 170091778 -14196884 + LTR53 LTR ERVL 1 511 -8 957 246 114 86 chr4 170091843 170092368 -14196294 - MLT1F LTR MaLR 0 542 3 1279 220 69 69 chr4 170092447 170092911 -14195751 - MLT1C LTR MaLR -3 464 1 25 31 0 0 chr4 170093027 170093059 -14195603 + AT_rich Low_complexity Low_complexity 1 32 0 2024 104 3 57 chr4 170093263 170093579 -14195083 - AluSc SINE Alu -10 299 1 245 215 51 25 chr4 170093739 170093818 -14194844 - MLT1L LTR MaLR -26 589 509 1429 158 135 8 chr4 170094414 170094680 -14193982 + AluSg1 SINE Alu 1 300 -9 933 154 0 0 chr4 170094680 170094842 -14193820 + GA-rich Low_complexity Low_complexity 1 162 0 1590 131 120 11 chr4 170094846 170095113 -14193549 + AluSg1 SINE Alu 1 296 -13 981 215 53 22 chr4 170095767 170096111 -14192551 + L1ME1 LINE L1 5191 5545 -621 1201 66 0 7 chr4 170096136 170096288 -14192374 + AluSq/x SINE Alu 1 151 -162 1389 254 32 54 chr4 170096314 170096479 -14192183 + L1ME1 LINE L1 5573 5740 -426 2202 107 0 7 chr4 170096479 170096778 -14191884 + AluSg SINE Alu 1 297 -13 1389 254 32 54 chr4 170096778 170097109 -14191553 + L1ME1 LINE L1 5740 6058 -108 257 0 30 0 chr4 170097109 170097142 -14191520 + (TTG)n Simple_repeat Simple_repeat 3 36 0 361 127 17 6 chr4 170097269 170097343 -14191319 - AluS SINE Alu -244 59 1 233 265 29 0 chr4 170097343 170097411 -14191251 + L1ME1 LINE L1 6065 6134 -32 1972 118 11 4 chr4 170097411 170097718 -14190944 + AluSq SINE Alu 1 309 0 2203 157 16 3 chr4 170097891 170098261 -14190401 - THE1C LTR MaLR 0 375 1 25 0 0 0 chr4 170098640 170098665 -14189997 + AT_rich Low_complexity Low_complexity 1 25 0 34 42 0 0 chr4 170099078 170099126 -14189536 + AT_rich Low_complexity Low_complexity 1 48 0 928 333 42 9 chr4 170099249 170099676 -14188986 + ERVL LTR ERVL 1897 2337 -3427 595 334 176 33 chr4 170100291 170101025 -14187637 - L1M2 LINE L1 -5352 1497 659 235 308 0 0 chr4 170101025 170101090 -14187572 + (TGG)n Simple_repeat Simple_repeat 1 65 0 1221 130 5 2 chr4 170101190 170101631 -14187031 + (TGG)n Simple_repeat Simple_repeat 1 442 0 893 59 84 0 chr4 170102153 170102272 -14186390 - MER85 DNA T2_type -10 129 1 8083 246 45 46 chr4 170102715 170105927 -14182735 - L1M4b LINE L1 -1179 5778 2617 29 47 0 0 chr4 170106045 170106088 -14182574 + AT_rich Low_complexity Low_complexity 1 43 0 187 54 54 0 chr4 170106094 170106131 -14182531 + (TA)n Simple_repeat Simple_repeat 1 39 0 2571 20 0 0 chr4 170106218 170106512 -14182150 - AluYb8 SINE Alu -2 316 23 777 313 61 12 chr4 170106530 170106939 -14181723 - L1M4b LINE L1 -4587 2372 1944 328 292 0 0 chr4 170106939 170107035 -14181627 + MER34 LTR ERV1 1 96 -446 2318 212 19 8 chr4 170107040 170107521 -14181141 + LTR29 LTR ERV1 137 622 0 3799 286 51 38 chr4 170107522 170107830 -14180832 - L1M4b LINE L1 -4909 1946 1643 1692 183 3 0 chr4 170107830 170108115 -14180547 - AluJo SINE Alu -12 300 15 3799 286 51 38 chr4 170108115 170109576 -14179086 - L1M4b LINE L1 -5212 1643 150 1532 158 8 106 chr4 170109576 170109962 -14178700 + MER4A LTR ERV1 1 348 -316 860 213 64 39 chr4 170109965 170110271 -14178391 + MER4C LTR ERV1 276 692 -7 431 243 66 40 chr4 170110275 170110427 -14178235 - L1M4b LINE L1 -6703 156 1 260 193 136 23 chr4 170110641 170110729 -14177933 + L1ME LINE L1 4552 4649 -1497 1446 224 29 53 chr4 170110841 170111087 -14177575 + L1MC3 LINE L1 6866 7100 -685 657 110 0 0 chr4 170111087 170111196 -14177466 + (TA)n Simple_repeat Simple_repeat 1 109 0 1446 224 29 53 chr4 170111196 170111360 -14177302 + L1MC3 LINE L1 7100 7266 -519 456 301 42 21 chr4 170111481 170111717 -14176945 + L1ME LINE L1 5358 5598 -564 212 258 0 0 chr4 170111903 170111965 -14176697 + A-rich Low_complexity Low_complexity 4 65 0 25 51 0 0 chr4 170112384 170112423 -14176239 + AT_rich Low_complexity Low_complexity 1 39 0 2017 166 0 3 chr4 170112461 170112799 -14175863 - MER1B DNA MER1_type 0 337 1 21 0 0 0 chr4 170112962 170112983 -14175679 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr4 170113472 170113501 -14175161 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 170114320 170114341 -14174321 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr4 170114547 170114582 -14174080 + AT_rich Low_complexity Low_complexity 1 35 0 244 311 126 7 chr4 170114822 170114973 -14173689 + L2 LINE L2 3140 3308 -5 362 337 88 50 chr4 170115000 170115418 -14173244 + L2 LINE L2 2304 2737 -577 185 333 0 26 chr4 170115684 170115762 -14172900 - L2 LINE L2 -4 3309 3234 1450 111 4 40 chr4 170115899 170116125 -14172537 - AluSc SINE Alu -17 292 75 507 139 0 0 chr4 170116146 170116225 -14172437 - AluY SINE Alu -218 100 22 577 176 0 0 chr4 170116226 170116328 -14172334 - AluYb8 SINE Alu -215 103 2 235 288 206 33 chr4 170116670 170116854 -14171808 - LTR16A LTR ERVL -182 268 53 451 348 14 45 chr4 170116973 170117263 -14171399 - LTR16A LTR ERVL -153 297 17 2133 109 10 0 chr4 170117703 170117996 -14170666 - AluSp SINE Alu -17 296 1 2233 91 7 0 chr4 170118416 170118701 -14169961 + AluSg SINE Alu 1 287 -23 21 0 0 0 chr4 170118701 170118722 -14169940 + AT_rich Low_complexity Low_complexity 1 21 0 202 368 44 18 chr4 170119974 170120088 -14168574 - L2 LINE L2 0 3272 3156 227 208 21 0 chr4 170120228 170120276 -14168386 + GA-rich Low_complexity Low_complexity 2 50 0 343 380 119 16 chr4 170120434 170120881 -14167781 - L2 LINE L2 -511 2803 2311 2049 117 21 0 chr4 170120986 170121277 -14167385 + AluSq SINE Alu 1 297 -16 187 316 51 63 chr4 170121566 170121724 -14166938 - MIR SINE MIR -98 164 9 183 80 0 0 chr4 170121841 170121866 -14166796 + (TG)n Simple_repeat Simple_repeat 2 26 0 24 32 0 0 chr4 170122424 170122455 -14166207 + AT_rich Low_complexity Low_complexity 1 31 0 3802 167 24 40 chr4 170123069 170123859 -14164803 - MER4E LTR ERV1 0 779 3 205 253 58 46 chr4 170123882 170123969 -14164693 - MIR SINE MIR -66 196 109 297 118 0 0 chr4 170124006 170124057 -14164605 + (TG)n Simple_repeat Simple_repeat 2 52 0 1277 177 38 19 chr4 170124347 170124663 -14163999 + L1MA9 LINE L1 5991 6312 0 26 50 0 0 chr4 170125728 170125768 -14162894 + AT_rich Low_complexity Low_complexity 1 40 0 1400 179 51 22 chr4 170126361 170126635 -14162027 + AluJo SINE Alu 1 282 -30 213 39 0 0 chr4 170126638 170126664 -14161998 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 522 278 61 0 chr4 170126734 170126914 -14161748 - L1M4 LINE L1 -1832 4314 4124 10608 146 15 7 chr4 170126914 170128631 -14160031 + Tigger2 DNA MER2_type 988 2718 0 1588 244 135 37 chr4 170128647 170128729 -14159933 - L1MDa LINE L1 -4474 2066 1993 4039 62 18 4 chr4 170128729 170129273 -14159389 - L1PA8 LINE L1 0 6172 5621 1588 244 135 37 chr4 170129273 170130084 -14158578 - L1MDa LINE L1 -4547 1993 1085 1647 114 0 0 chr4 170130382 170130601 -14158061 - AluSg/x SINE Alu -9 301 83 6863 194 88 34 chr4 170131683 170133276 -14155386 - MER52A LTR ERV1 0 1755 2 420 104 0 0 chr4 170133295 170133362 -14155300 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 2451 75 0 3 chr4 170133594 170133901 -14154761 - AluY SINE Alu -5 306 1 966 157 6 0 chr4 170134119 170134278 -14154384 + AluSg/x SINE Alu 137 296 -14 465 103 0 0 chr4 170134278 170134346 -14154316 + (GGGGA)n Simple_repeat Simple_repeat 4 71 0 24 32 0 0 chr4 170134773 170134804 -14153858 + AT_rich Low_complexity Low_complexity 1 31 0 281 336 29 10 chr4 170135320 170135424 -14153238 + L2 LINE L2 3207 3312 -1 33 25 0 0 chr4 170135437 170135477 -14153185 + AT_rich Low_complexity Low_complexity 1 40 0 23 33 0 0 chr4 170135585 170135615 -14153047 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 170135653 170135674 -14152988 + AT_rich Low_complexity Low_complexity 1 21 0 195 203 0 0 chr4 170136519 170136578 -14152084 + (TG)n Simple_repeat Simple_repeat 1 59 0 1760 183 95 20 chr4 170136749 170137149 -14151513 - MSTB1 LTR MaLR 0 432 3 1187 161 5 31 chr4 170137543 170137766 -14150896 - Tigger2a DNA MER2_type -217 217 1 27 0 0 0 chr4 170138371 170138398 -14150264 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chr4 170139015 170139052 -14149610 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr4 170139175 170139196 -14149466 + AT_rich Low_complexity Low_complexity 1 21 0 21 112 0 0 chr4 170139988 170140086 -14148576 + AT_rich Low_complexity Low_complexity 1 98 0 264 250 99 80 chr4 170141152 170141364 -14147298 + MIR SINE MIR 47 262 0 26 0 0 0 chr4 170142068 170142094 -14146568 + AT_rich Low_complexity Low_complexity 1 26 0 762 130 14 7 chr4 170142216 170142354 -14146308 + L1MB3 LINE L1 6044 6182 -1 255 211 18 0 chr4 170142633 170142672 -14145990 + CT-rich Low_complexity Low_complexity 3 45 -15 2345 101 0 0 chr4 170142672 170142978 -14145684 - AluSc SINE Alu -3 306 1 255 211 18 0 chr4 170142978 170142995 -14145667 + CT-rich Low_complexity Low_complexity 45 60 0 354 23 0 0 chr4 170143176 170143219 -14145443 + (TG)n Simple_repeat Simple_repeat 2 44 0 3363 181 24 31 chr4 170143621 170144201 -14144461 + LTR51 LTR ERV1 1 577 -94 2143 112 0 0 chr4 170144201 170144504 -14144158 + L1PA11 LINE L1 5872 6174 0 3363 181 24 31 chr4 170144504 170144596 -14144066 + LTR51 LTR ERV1 577 668 -3 412 298 60 60 chr4 170144623 170144871 -14143791 + MIR SINE MIR 15 262 0 21 0 0 0 chr4 170145998 170146019 -14142643 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 170146369 170146390 -14142272 + AT_rich Low_complexity Low_complexity 1 21 0 259 388 9 9 chr4 170146532 170146648 -14142014 - MIR SINE MIR -145 117 2 467 214 128 0 chr4 170146754 170146871 -14141791 - FLAM_C SINE Alu -1 132 1 397 283 100 36 chr4 170147092 170147371 -14141291 - L1ME LINE L1 -554 5852 5556 196 150 40 50 chr4 170147528 170147628 -14141034 + T-rich Low_complexity Low_complexity 5 103 0 1012 299 85 42 chr4 170147649 170148093 -14140569 - L1ME LINE L1 -1072 5310 4887 243 61 0 0 chr4 170148093 170148126 -14140536 + (CA)n Simple_repeat Simple_repeat 2 34 0 1012 299 85 42 chr4 170148126 170148700 -14139962 - L1ME LINE L1 -1495 4887 4248 228 111 0 0 chr4 170148700 170148736 -14139926 + (T)n Simple_repeat Simple_repeat 1 36 0 2262 68 10 3 chr4 170148769 170149065 -14139597 + AluY SINE Alu 1 298 -13 373 216 11 11 chr4 170149222 170149310 -14139352 - L1ME LINE L1 -2272 4110 4023 302 260 30 71 chr4 170149464 170149501 -14139161 - L1ME LINE L1 -2726 3656 3619 1905 144 3 0 chr4 170149501 170149785 -14138877 - AluSx SINE Alu -27 285 1 302 260 30 71 chr4 170149785 170149916 -14138746 - L1ME LINE L1 -2763 3619 3495 274 279 151 32 chr4 170150247 170150816 -14137846 - L1ME LINE L1 -3242 3140 2504 365 131 0 0 chr4 170151023 170151084 -14137578 - L1MA8 LINE L1 -187 6104 6044 344 259 47 0 chr4 170151297 170151382 -14137280 - L1MC4 LINE L1 -1339 6703 6615 334 262 55 50 chr4 170151506 170151717 -14136945 - L1ME LINE L1 -4537 1845 1580 1627 282 61 14 chr4 170151745 170152320 -14136342 + MER90 LTR ERV1 11 612 -2 332 316 37 11 chr4 170152331 170152600 -14136062 - L1ME LINE L1 -4868 1695 1420 332 208 0 28 chr4 170152746 170152818 -14135844 + MER70A LTR ERVL 401 470 -2 311 219 0 0 chr4 170153530 170153594 -14135068 - MLT1B LTR MaLR 0 390 327 2877 13 0 0 chr4 170153608 170153925 -14134737 - AluYb8 SINE Alu -1 317 1 255 322 94 13 chr4 170154498 170154647 -14134015 + L2 LINE L2 3153 3313 0 404 232 0 0 chr4 170154723 170154805 -14133857 - MER77 LTR ERV1 -1 604 523 3681 169 84 6 chr4 170154824 170155523 -14133139 + LTR1B LTR ERV1 1 754 -72 216 0 0 0 chr4 170155664 170155688 -14132974 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1821 153 35 38 chr4 170157744 170158111 -14130551 + MER47A DNA MER2_type 1 366 0 865 306 8 4 chr4 170158407 170158662 -14130000 + L1MEc LINE L1 22 277 -6119 285 310 137 31 chr4 170159114 170159340 -14129322 + L1MEc LINE L1 296 545 -5851 385 243 18 18 chr4 170159379 170159490 -14129172 + L1MEc LINE L1 626 736 -5660 514 282 110 45 chr4 170159498 170159940 -14128722 + L1MEc LINE L1 728 1110 -5107 2394 236 118 79 chr4 170159952 170161001 -14127661 + MER52A LTR ERV1 666 1755 0 1166 251 32 26 chr4 170161710 170162541 -14126121 + L1MEc LINE L1 1297 2411 -3985 1171 242 72 30 chr4 170162542 170163095 -14125567 - MLT1E3 LTR MaLR 0 624 1 271 321 46 15 chr4 170163095 170163226 -14125436 - MLT1E3-int LTR MaLR 0 1371 1237 503 250 12 123 chr4 170163325 170163569 -14125093 - MLT1E3-int LTR MaLR -173 1198 982 256 254 0 0 chr4 170163751 170163810 -14124852 - MLT1E3-int LTR MaLR -621 750 692 870 233 60 26 chr4 170164006 170164272 -14124390 - MLT1E3-int LTR MaLR -768 603 329 2343 81 0 0 chr4 170164681 170164976 -14123686 - AluY SINE Alu -16 295 1 35612 101 10 12 chr4 170164995 170171143 -14117519 - L1PA6 LINE L1 -11 6143 11 1016 208 0 52 chr4 170171236 170171467 -14117195 + AluJo SINE Alu 86 304 -8 1937 157 138 5 chr4 170171600 170171976 -14116686 - MSTA LTR MaLR 0 428 3 8513 191 18 10 chr4 170171978 170173615 -14115047 - MSTA-int LTR MaLR 0 1651 1 2157 151 117 5 chr4 170173615 170174000 -14114662 - MSTA LTR MaLR 0 428 1 22 80 0 0 chr4 170176000 170176050 -14112612 + AT_rich Low_complexity Low_complexity 1 50 0 384 0 0 38 chr4 170176491 170176544 -14112118 + L1PA2 LINE L1 6100 6150 -5 1941 135 0 4 chr4 170177050 170177324 -14111338 + AluSg SINE Alu 1 273 -37 216 0 0 0 chr4 170177337 170177361 -14111301 + (TAA)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chr4 170177589 170177611 -14111051 + AT_rich Low_complexity Low_complexity 1 22 0 483 299 8 0 chr4 170178295 170178429 -14110233 + MIR SINE MIR 104 238 -24 1677 163 72 0 chr4 170179954 170180285 -14108377 - L1MA2 LINE L1 -48 6256 5902 1990 101 3 59 chr4 170180453 170180760 -14107902 + AluSg SINE Alu 6 295 -15 22 35 0 0 chr4 170181852 170181881 -14106781 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr4 170182086 170182111 -14106551 + AT_rich Low_complexity Low_complexity 1 25 0 1519 186 18 11 chr4 170182117 170182397 -14106265 - AluJo SINE Alu -30 282 1 1470 167 21 29 chr4 170182616 170182933 -14105729 - AluJb SINE Alu 0 317 3 222 118 0 0 chr4 170183044 170183078 -14105584 + (T)n Simple_repeat Simple_repeat 1 34 0 1934 247 112 31 chr4 170183270 170183938 -14104724 - MER72 LTR ERV1 0 722 1 520 300 53 9 chr4 170184268 170184495 -14104167 - L1ME3A LINE L1 -30 6140 5904 21 57 0 0 chr4 170185010 170185045 -14103617 + AT_rich Low_complexity Low_complexity 1 35 0 1863 187 109 77 chr4 170185149 170185603 -14103059 + LTR28 LTR ERV1 31 506 -514 2474 66 0 0 chr4 170185603 170185905 -14102757 - AluY SINE Alu -9 302 1 1863 187 109 77 chr4 170185905 170185980 -14102682 + LTR28 LTR ERV1 506 577 -443 303 225 21 56 chr4 170186035 170186177 -14102485 + LTR27 LTR ERV1 500 636 0 1744 175 10 13 chr4 170186508 170186817 -14101845 + AluJb SINE Alu 1 308 -4 342 217 0 0 chr4 170187069 170187152 -14101510 + L1P LINE L1 1965 2047 -4099 201 238 0 0 chr4 170187430 170187472 -14101190 + (TG)n Simple_repeat Simple_repeat 1 42 0 2036 119 7 0 chr4 170188199 170188494 -14100168 + AluY SINE Alu 1 297 -14 21 0 0 0 chr4 170188694 170188715 -14099947 + AT_rich Low_complexity Low_complexity 1 21 0 489 328 116 30 chr4 170189722 170190288 -14098374 - L1MC4a LINE L1 -303 5818 5264 25 51 0 0 chr4 170190295 170190334 -14098328 + AT_rich Low_complexity Low_complexity 1 39 0 367 305 95 43 chr4 170190754 170191177 -14097485 - L1MC4a LINE L1 -1570 4576 4132 383 295 129 24 chr4 170191304 170191514 -14097148 + MIR SINE MIR 20 251 -11 26723 29 1 0 chr4 170191645 170195693 -14092969 + L1PA2 LINE L1 2143 6155 0 185 228 63 63 chr4 170195952 170196031 -14092631 + MIR SINE MIR 120 198 -64 22 0 0 0 chr4 170196194 170196216 -14092446 + AT_rich Low_complexity Low_complexity 1 22 0 33 43 0 0 chr4 170196393 170196440 -14092222 + AT_rich Low_complexity Low_complexity 1 47 0 209 328 0 0 chr4 170198636 170198694 -14089968 + L2 LINE L2 3190 3247 -66 1793 141 69 0 chr4 170198781 170199072 -14089590 - AluSx SINE Alu -1 311 1 382 287 28 9 chr4 170199297 170199405 -14089257 + MIR SINE MIR 32 141 -121 1199 212 41 38 chr4 170199428 170199864 -14088798 - MLT2D LTR ERVL -28 436 1 1703 151 65 0 chr4 170200404 170200741 -14087921 + L1MA8 LINE L1 5933 6291 0 26 30 0 0 chr4 170201171 170201204 -14087458 + AT_rich Low_complexity Low_complexity 1 33 0 24 67 0 0 chr4 170201799 170201844 -14086818 + AT_rich Low_complexity Low_complexity 1 45 0 3839 161 9 10 chr4 170203403 170204099 -14084563 - L1MA4 LINE L1 -7 6293 5599 192 191 43 0 chr4 170204702 170204749 -14083913 - MER5C DNA MER1_type -10 314 266 420 301 116 53 chr4 170205034 170205389 -14083273 + MLT1I LTR MaLR 29 405 -4 297 191 11 64 chr4 170206658 170206752 -14081910 - L2 LINE L2 0 3313 3225 2156 131 0 0 chr4 170206985 170207282 -14081380 + AluSx SINE Alu 1 297 -15 351 0 0 0 chr4 170207302 170207341 -14081321 + (CA)n Simple_repeat Simple_repeat 2 40 0 1953 157 0 0 chr4 170207779 170208084 -14080578 - AluJo SINE Alu -7 305 1 2471 264 68 24 chr4 170208316 170209958 -14078704 - L1M4c LINE L1 -3985 2840 976 4145 206 26 25 chr4 170209992 170210926 -14077736 - L1MA10 LINE L1 -29 6305 5371 3512 186 11 27 chr4 170210933 170211520 -14077142 + L1 LINE L1 3329 3903 -2243 498 227 50 17 chr4 170211520 170211639 -14077023 + FLAM_A SINE Alu 3 125 -8 3512 186 11 27 chr4 170211639 170211788 -14076874 + L1 LINE L1 3903 4053 -2093 1742 252 18 46 chr4 170211784 170212327 -14076335 - L1M4c LINE L1 -5558 984 457 * 723 267 52 26 chr4 170212407 170212639 -14076023 - L1M4c LINE L1 -6290 252 15 23 68 0 0 chr4 170212851 170212895 -14075767 + AT_rich Low_complexity Low_complexity 1 44 0 29 47 0 0 chr4 170213000 170213043 -14075619 + AT_rich Low_complexity Low_complexity 1 43 0 26 0 0 0 chr4 170213721 170213747 -14074915 + AT_rich Low_complexity Low_complexity 1 26 0 2252 81 3 7 chr4 170214170 170214467 -14074195 + AluY SINE Alu 16 311 0 21 0 0 0 chr4 170214467 170214488 -14074174 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chr4 170215143 170215159 -14073503 + (CA)n Simple_repeat Simple_repeat 1 47 0 279 0 0 0 chr4 170215159 170215190 -14073472 + (CA)n Simple_repeat Simple_repeat 2 32 0 26 30 0 0 chr4 170215204 170215237 -14073425 + AT_rich Low_complexity Low_complexity 1 33 0 721 246 121 10 chr4 170215721 170216010 -14072652 - L1MB7 LINE L1 -10 6174 5854 683 231 10 88 chr4 170216011 170216319 -14072343 - L1MB7 LINE L1 -1538 4608 4325 222 375 0 11 chr4 170216660 170216748 -14071914 - L2 LINE L2 0 3313 3227 209 227 0 13 chr4 170217174 170217249 -14071413 + (CATA)n Simple_repeat Simple_repeat 2 75 0 290 369 38 6 chr4 170217535 170217692 -14070970 + MIR SINE MIR 1 162 -100 1924 191 55 33 chr4 170217982 170218204 -14070458 - Tigger2a DNA MER2_type -2280 428 191 2095 114 6 32 chr4 170218204 170218519 -14070143 + AluSx SINE Alu 3 309 -3 1924 191 55 33 chr4 170218519 170218715 -14069947 - Tigger2a DNA MER2_type -2517 191 1 2043 114 0 0 chr4 170219043 170219316 -14069346 - AluSc SINE Alu -16 293 21 325 109 31 0 chr4 170219532 170219596 -14069066 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 24 53 0 0 chr4 170220797 170220835 -14067827 + AT_rich Low_complexity Low_complexity 1 38 0 3445 170 41 21 chr4 170220904 170221605 -14067057 + L1MC1 LINE L1 5619 6333 0 1453 120 204 0 chr4 170221973 170222223 -14066439 - AluSx SINE Alu 0 302 2 2151 244 16 65 chr4 170222501 170223082 -14065580 + MLT2B3 LTR ERVL 1 552 -2 1923 163 10 7 chr4 170223470 170223776 -14064886 - AluSx SINE Alu -5 307 1 1617 275 49 50 chr4 170224096 170224856 -14063806 - L1ME3A LINE L1 -122 6048 5290 1424 110 191 16 chr4 170224950 170225196 -14063466 - AluSg1 SINE Alu -20 289 1 1111 330 75 6 chr4 170225341 170225811 -14062851 + L2 LINE L2 2192 2693 -621 655 307 101 33 chr4 170225886 170226321 -14062341 - MLT1E3 LTR MaLR -99 494 6 292 319 22 37 chr4 170226533 170226668 -14061994 - LTR67 LTR ERVL -422 135 3 24 32 0 0 chr4 170227622 170227653 -14061009 + AT_rich Low_complexity Low_complexity 1 31 0 2164 129 0 6 chr4 170227722 170228033 -14060629 - AluSx SINE Alu -3 309 1 235 286 22 0 chr4 170228464 170228555 -14060107 - L1MCc LINE L1 -4926 1497 1405 912 254 44 23 chr4 170228569 170228911 -14059751 - L1ME3A LINE L1 -1011 5135 4787 1352 179 30 13 chr4 170228924 170229239 -14059423 - L1MC/D LINE L1 -743 5403 5237 1217 223 115 11 chr4 170229250 170229685 -14058977 - L1MC/D LINE L1 -1276 4870 4391 1133 247 34 14 chr4 170229703 170230145 -14058517 - L1MC/D LINE L1 -2778 3368 2918 876 271 30 4 chr4 170230187 170230423 -14058239 - MLT1F1 LTR MaLR -3 564 323 21 0 0 0 chr4 170230879 170230900 -14057762 + AT_rich Low_complexity Low_complexity 1 21 0 987 129 0 25 chr4 170231651 170231814 -14056848 + MSTB LTR MaLR 1 159 -269 1205 132 0 0 chr4 170231817 170231991 -14056671 + HUERS-P3 LTR ERV1 6007 6180 -1238 351 68 0 0 chr4 170232010 170232054 -14056608 - Alu SINE Alu -264 44 1 4469 113 9 15 chr4 170232054 170232711 -14055951 + HUERS-P3 LTR ERV1 6169 6821 -597 1782 143 0 0 chr4 170232710 170232976 -14055686 + HUERS-P3 LTR ERV1 8650 8915 -4 * 3824 93 45 6 chr4 170232978 170233517 -14055145 + LTR9B LTR ERV1 1 560 -84 1286 153 22 73 chr4 170233554 170233596 -14055066 + MSTB LTR MaLR 160 203 -223 2203 111 0 7 chr4 170233596 170233894 -14054768 + AluSx SINE Alu 5 300 -12 1286 153 22 73 chr4 170233894 170234126 -14054536 + MSTB LTR MaLR 203 420 -6 1725 128 16 78 chr4 170234530 170234851 -14053811 + AluSg SINE Alu 7 307 -3 1995 129 0 11 chr4 170236109 170236416 -14052246 + AluSx SINE Alu 1 304 0 944 182 52 9 chr4 170237053 170237348 -14051314 - L1MB5 LINE L1 -6 6168 5840 749 272 142 67 chr4 170237349 170238139 -14050523 - L2 LINE L2 -42 3271 2427 944 265 5 0 chr4 170238531 170238754 -14049908 + MER58A DNA MER1_type 1 224 0 183 80 0 0 chr4 170239208 170239233 -14049429 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1685 179 3 14 chr4 170239245 170239535 -14049127 - AluJo SINE Alu -25 287 1 421 335 112 16 chr4 170239717 170240021 -14048641 + L3b LINE CR1 1223 1555 -28 23 68 0 0 chr4 170240506 170240550 -14048112 + AT_rich Low_complexity Low_complexity 1 44 0 188 398 28 0 chr4 170240695 170240803 -14047859 + MIR SINE MIR 30 140 -122 969 236 39 106 chr4 170240819 170241558 -14047104 + MER52A LTR ERV1 1 1452 -141 512 194 139 7 chr4 170241585 170241729 -14046933 + MER52A LTR ERV1 1593 1755 0 198 289 13 26 chr4 170241737 170241813 -14046849 + MIR SINE MIR 183 257 -5 341 298 11 0 chr4 170242287 170242381 -14046281 - MIR SINE MIR -163 99 5 26 30 0 0 chr4 170242518 170242551 -14046111 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr4 170243220 170243242 -14045420 + AT_rich Low_complexity Low_complexity 1 22 0 2206 116 0 0 chr4 170243488 170243789 -14044873 + AluSg SINE Alu 1 301 -9 23 0 0 0 chr4 170245233 170245256 -14043406 + AT_rich Low_complexity Low_complexity 1 23 0 255 61 0 0 chr4 170245428 170245461 -14043201 + (CA)n Simple_repeat Simple_repeat 2 34 0 27 49 0 0 chr4 170245528 170245569 -14043093 + AT_rich Low_complexity Low_complexity 1 41 0 615 234 0 0 chr4 170245955 170246079 -14042583 + AluJb SINE Alu 135 258 -54 984 84 0 21 chr4 170246604 170246747 -14041915 - L1PA7 LINE L1 0 6154 6015 731 249 47 74 chr4 170247225 170247766 -14040896 + MER34B LTR ERV1 35 591 -4 1138 237 59 28 chr4 170247849 170248203 -14040459 + MLT1A1 LTR MaLR 1 365 0 4988 82 8 1 chr4 170248489 170249145 -14039517 - PABL_A LTR ERV1 0 660 1 477 293 87 29 chr4 170249227 170249469 -14039193 + MER89-int LTR ERV1 452 707 -6094 926 256 37 96 chr4 170249480 170250024 -14038638 + MER89-int LTR ERV1 638 1149 -5182 2178 122 3 0 chr4 170254220 170254523 -14034139 - AluSx SINE Alu -8 304 1 449 251 44 79 chr4 170255057 170255503 -14033159 + MER34B LTR ERV1 189 542 0 240 221 0 78 chr4 170256488 170256565 -14032097 + L1ME LINE L1 498 568 -5637 48 49 0 29 chr4 170256796 170256898 -14031764 + AT_rich Low_complexity Low_complexity 1 99 0 231 230 122 14 chr4 170256988 170257062 -14031600 - MER58 DNA MER1_type 0 2420 2339 373 327 48 32 chr4 170257063 170257314 -14031348 + L1ME LINE L1 1318 1572 -4824 350 311 196 30 chr4 170257734 170258569 -14030093 + L1ME LINE L1 4282 5255 -960 904 183 13 0 chr4 170258581 170258734 -14029928 + FRAM SINE Alu 9 163 -13 47 19 0 0 chr4 170258801 170258855 -14029807 + AT_rich Low_complexity Low_complexity 1 54 0 421 299 43 48 chr4 170258886 170259196 -14029466 + L1ME LINE L1 5388 5689 -501 1224 249 110 14 chr4 170259233 170259578 -14029084 - LTR52 LTR ERVL -43 378 1 230 197 42 42 chr4 170259712 170259783 -14028879 + L1ME LINE L1 5836 5906 -333 3508 115 54 27 chr4 170260391 170260983 -14027679 + MER4B LTR ERV1 3 610 0 2137 138 100 8 chr4 170261202 170261592 -14027070 - MSTA LTR MaLR -2 426 1 29 28 0 0 chr4 170261615 170261651 -14027011 + AT_rich Low_complexity Low_complexity 1 36 0 317 24 24 0 chr4 170262416 170262458 -14026204 + (TG)n Simple_repeat Simple_repeat 2 44 0 2050 130 3 7 chr4 170262465 170262773 -14025889 - AluSx SINE Alu 0 312 6 279 261 65 11 chr4 170262853 170262945 -14025717 + LTR33 LTR ERVL 336 432 -89 1494 182 95 50 chr4 170263010 170263389 -14025273 - MSTD LTR MaLR 0 396 1 29 60 0 0 chr4 170264630 170264680 -14023982 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr4 170264738 170264759 -14023903 + AT_rich Low_complexity Low_complexity 1 21 0 24 85 0 0 chr4 170265146 170265205 -14023457 + AT_rich Low_complexity Low_complexity 1 59 0 676 200 87 30 chr4 170265205 170265470 -14023192 - MER33 DNA MER1_type -44 280 1 21 0 0 0 chr4 170265662 170265683 -14022979 + AT_rich Low_complexity Low_complexity 1 21 0 28 48 0 0 chr4 170265799 170265841 -14022821 + AT_rich Low_complexity Low_complexity 1 42 0 26 50 0 0 chr4 170267295 170267335 -14021327 + AT_rich Low_complexity Low_complexity 1 40 0 1802 119 6 102 chr4 170267827 170268180 -14020482 + MER1B DNA MER1_type 21 339 0 1982 293 71 63 chr4 170269022 170270487 -14018175 + L2 LINE L2 1832 3307 -6 1269 238 118 50 chr4 170270616 170271091 -14017571 - MLT2B1 LTR ERVL 0 520 14 27 0 0 0 chr4 170271400 170271427 -14017235 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr4 170271747 170271768 -14016894 + AT_rich Low_complexity Low_complexity 1 21 0 5191 69 46 7 chr4 170272781 170273049 -14015613 + MER4E LTR ERV1 1 257 -509 180 0 0 0 chr4 170273049 170273069 -14015593 + (TTCC)n Simple_repeat Simple_repeat 1 20 0 5191 69 46 7 chr4 170273069 170273537 -14015125 + MER4E LTR ERV1 257 766 0 1717 68 0 0 chr4 170274827 170275033 -14013629 + AluY SINE Alu 101 306 -5 482 302 188 28 chr4 170276133 170276696 -14011966 + L2 LINE L2 2010 2662 -652 1706 172 4 0 chr4 170276915 170277182 -14011480 - AluSx SINE Alu -44 268 1 240 311 40 66 chr4 170277186 170277290 -14011372 + L2 LINE L2 3005 3110 -203 1812 164 14 27 chr4 170277290 170277656 -14011006 - MER46B DNA MER2_type 0 236 1 240 311 40 66 chr4 170277656 170277779 -14010883 + L2 LINE L2 3110 3226 -87 294 211 53 0 chr4 170278165 170278222 -14010440 + MIR SINE MIR 48 107 -155 265 268 44 36 chr4 170278411 170278526 -14010136 - MLT1G LTR MaLR -298 257 170 1187 253 95 38 chr4 170279245 170279719 -14008943 + MLT1D LTR MaLR 5 505 0 2463 63 0 0 chr4 170279839 170280139 -14008523 - AluY SINE Alu -11 300 1 594 256 145 25 chr4 170280604 170280907 -14007755 + MER57A LTR ERV1 101 403 0 1985 143 0 17 chr4 170282758 170283058 -14005604 + AluSq SINE Alu 1 295 -18 3320 248 81 55 chr4 170283123 170286197 -14002465 + L1MDb LINE L1 11 2942 -3464 23 0 0 0 chr4 170286247 170286270 -14002392 + AT_rich Low_complexity Low_complexity 1 23 0 3216 125 47 2 chr4 170286519 170287008 -14001654 - MER9 LTR ERVK 0 511 1 286 79 0 0 chr4 170287282 170287320 -14001342 - MLT2D LTR ERVL -8 389 352 254 135 39 0 chr4 170287333 170287385 -14001277 + (CATA)n Simple_repeat Simple_repeat 3 56 0 1389 253 13 11 chr4 170287385 170287757 -14000905 - MLT2D LTR ERVL -41 373 1 393 311 29 34 chr4 170287836 170288042 -14000620 + Charlie2 DNA MER1_type 77 281 -2501 510 268 55 0 chr4 170288197 170288361 -14000301 + Charlie2a DNA MER1_type 1478 1650 -1212 25 0 0 0 chr4 170288416 170288441 -14000221 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr4 170288600 170288630 -14000032 + AT_rich Low_complexity Low_complexity 1 30 0 1250 216 54 29 chr4 170288961 170289312 -13999350 + MLT1A1 LTR MaLR 4 363 -2 933 188 30 20 chr4 170289731 170289928 -13998734 + MER20 DNA MER1_type 4 202 -17 1310 275 68 68 chr4 170289995 170290705 -13997957 + L1ME2 LINE L1 5389 6098 -66 612 177 18 0 chr4 170291772 170291885 -13996777 - FRAM SINE Alu -58 118 4 342 282 82 59 chr4 170292480 170292700 -13995962 - L1MCb LINE L1 -5251 794 570 268 328 59 44 chr4 170293069 170293407 -13995255 - L1MCb LINE L1 -5674 371 29 28 0 0 0 chr4 170293459 170293487 -13995175 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 170294186 170294209 -13994453 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr4 170294833 170294862 -13993800 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr4 170294971 170295007 -13993655 + AT_rich Low_complexity Low_complexity 1 36 0 381 348 84 65 chr4 170295320 170295717 -13992945 - L2 LINE L2 -1327 1987 1572 1807 176 7 0 chr4 170295717 170296024 -13992638 + AluSx SINE Alu 4 312 0 381 348 84 65 chr4 170296024 170296258 -13992404 - L2 LINE L2 -1742 1572 1344 1874 133 42 3 chr4 170296489 170296775 -13991887 - AluSg SINE Alu -13 297 1 502 351 82 29 chr4 170297890 170298476 -13990186 + MER110-int LTR ERV1 2034 2650 -1997 25 31 0 0 chr4 170300232 170300264 -13988398 + AT_rich Low_complexity Low_complexity 1 32 0 264 239 0 28 chr4 170301787 170301858 -13986804 + (TATATG)n Simple_repeat Simple_repeat 5 73 0 28 48 0 0 chr4 170301874 170301916 -13986746 + AT_rich Low_complexity Low_complexity 1 42 0 228 67 0 0 chr4 170302012 170302042 -13986620 + (TA)n Simple_repeat Simple_repeat 2 31 0 21 0 0 0 chr4 170302145 170302166 -13986496 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 170303144 170303165 -13985497 + AT_rich Low_complexity Low_complexity 1 21 0 294 307 161 47 chr4 170303829 170304103 -13984559 - L2 LINE L2 0 3313 3009 21 89 0 0 chr4 170304542 170304598 -13984064 + AT_rich Low_complexity Low_complexity 1 56 0 885 294 47 45 chr4 170304760 170305230 -13983432 + LTR38 LTR ERV1 86 556 0 28 0 0 0 chr4 170306480 170306508 -13982154 + AT_rich Low_complexity Low_complexity 1 28 0 793 247 6 0 chr4 170307254 170307420 -13981242 - MLT1A1 LTR MaLR -2 363 197 27 29 0 0 chr4 170307721 170307755 -13980907 + AT_rich Low_complexity Low_complexity 1 34 0 213 224 0 0 chr4 170307932 170307990 -13980672 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 2383 70 0 0 chr4 170308004 170308302 -13980360 + AluY SINE Alu 1 298 -13 22 35 0 0 chr4 170308538 170308567 -13980095 + AT_rich Low_complexity Low_complexity 1 29 0 2099 111 3 0 chr4 170308567 170308856 -13979806 - AluSx SINE Alu -22 290 1 333 85 0 0 chr4 170310801 170310848 -13977814 + MADE1 DNA Mariner 34 80 0 459 346 84 6 chr4 170310864 170311196 -13977466 + L2 LINE L2 2942 3299 -14 3746 169 77 10 chr4 170311197 170311974 -13976688 + L1PBa LINE L1 77 905 -5958 330 281 115 42 chr4 170312063 170312323 -13976339 + L1MEc LINE L1 2109 2387 -4009 2138 48 0 11 chr4 170312390 170312658 -13976004 - AluY SINE Alu -9 302 38 696 262 95 60 chr4 170313087 170313404 -13975258 + MER115 DNA AcHobo 361 688 -5 230 296 112 0 chr4 170313433 170313531 -13975131 + L1MEc LINE L1 2551 2659 -3556 1744 194 0 0 chr4 170313553 170313857 -13974805 + AluSx SINE Alu 1 304 -8 660 131 9 0 chr4 170313956 170314063 -13974599 + L1MB3 LINE L1 6073 6180 -3 354 236 38 168 chr4 170314155 170314553 -13974109 + L1MEc LINE L1 2861 3206 -3009 323 105 18 0 chr4 170316014 170316071 -13972591 + (CA)n Simple_repeat Simple_repeat 2 59 0 31 0 0 0 chr4 170316613 170316644 -13972018 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr4 170316890 170316915 -13971747 + AT_rich Low_complexity Low_complexity 1 25 0 198 313 0 15 chr4 170317133 170317200 -13971462 + MIR3 SINE MIR 119 184 -24 28 0 0 0 chr4 170317723 170317751 -13970911 + AT_rich Low_complexity Low_complexity 1 28 0 263 274 55 0 chr4 170318000 170318073 -13970589 - Cheshire DNA MER1_type -4 2416 2340 * 626 231 82 125 chr4 170318047 170318350 -13970312 - Cheshire DNA MER1_type -2129 291 2 21 0 0 0 chr4 170318500 170318521 -13970141 + AT_rich Low_complexity Low_complexity 1 21 0 465 90 0 0 chr4 170318625 170318692 -13969970 + (TG)n Simple_repeat Simple_repeat 2 68 0 262 231 0 0 chr4 170319152 170319204 -13969458 + LTR40a LTR ERVL 64 115 -404 189 0 0 0 chr4 170319242 170319263 -13969399 + (A)n Simple_repeat Simple_repeat 1 21 0 1070 302 4 4 chr4 170319263 170319538 -13969124 + LTR40a LTR ERVL 245 519 0 26 64 0 0 chr4 170320442 170320489 -13968173 + AT_rich Low_complexity Low_complexity 1 47 0 1210 285 75 18 chr4 170320515 170321031 -13967631 + MER77 LTR ERV1 78 673 -11 1281 189 100 0 chr4 170321095 170321344 -13967318 + AluJb SINE Alu 1 274 -38 216 0 0 0 chr4 170321347 170321371 -13967291 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 29 47 0 0 chr4 170321602 170321645 -13967017 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr4 170321816 170321837 -13966825 + AT_rich Low_complexity Low_complexity 1 21 0 288 162 14 81 chr4 170322283 170322357 -13966305 - MLT1D LTR MaLR -19 486 418 302 286 41 10 chr4 170322665 170322763 -13965899 - MIR SINE MIR -95 167 67 650 300 5 0 chr4 170323452 170323652 -13965010 - MER46C DNA MER2_type -21 317 117 629 150 108 0 chr4 170323800 170323920 -13964742 + FLAM_C SINE Alu 1 133 0 817 188 7 13 chr4 170324748 170324902 -13963760 + AluSx SINE Alu 1 153 -159 4801 162 56 39 chr4 170324999 170326521 -13962141 + L1MA4 LINE L1 4766 6294 -6 1599 164 66 6 chr4 170327622 170327940 -13960722 + L1PA16 LINE L1 5813 6149 -17 22 35 0 0 chr4 170328229 170328258 -13960404 + AT_rich Low_complexity Low_complexity 1 29 0 215 381 63 0 chr4 170328706 170328832 -13959830 + L2 LINE L2 2898 3031 -241 5432 167 21 18 chr4 170329132 170330407 -13958255 + L1P4 LINE L1 4398 5670 -495 5407 143 25 45 chr4 170330800 170332019 -13956643 + L1PA11 LINE L1 4972 6172 -2 21 36 0 0 chr4 170332019 170332047 -13956615 + AT_rich Low_complexity Low_complexity 1 28 0 21 82 0 0 chr4 170332079 170332128 -13956534 + AT_rich Low_complexity Low_complexity 1 49 0 31 82 0 0 chr4 170332295 170332368 -13956294 + AT_rich Low_complexity Low_complexity 1 73 0 24 0 0 0 chr4 170332583 170332607 -13956055 + AT_rich Low_complexity Low_complexity 1 24 0 662 278 35 58 chr4 170333502 170334128 -13954534 + L1ME3 LINE L1 5340 6004 -158 3024 169 26 10 chr4 170334237 170334822 -13953840 + L1MC1 LINE L1 5732 6325 -8 2146 106 7 0 chr4 170335481 170335782 -13952880 + AluSg SINE Alu 1 303 -7 21 0 0 0 chr4 170336606 170336627 -13952035 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr4 170336706 170336738 -13951924 + AT_rich Low_complexity Low_complexity 1 32 0 1420 92 9 53 chr4 170337569 170337796 -13950866 - AluSg/x SINE Alu -7 305 89 529 72 0 0 chr4 170337797 170337866 -13950796 + Alu SINE Alu 9 77 -232 186 356 50 20 chr4 170338009 170338110 -13950552 + L2 LINE L2 308 411 -2903 2486 229 63 36 chr4 170338139 170338499 -13950163 - L1M4 LINE L1 -1092 5054 4705 197 33 33 0 chr4 170338499 170338529 -13950133 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 2486 229 63 36 chr4 170338529 170339164 -13949498 - L1M4 LINE L1 -1441 4705 4032 1909 138 14 14 chr4 170339248 170339545 -13949117 - AluSq SINE Alu -16 297 1 294 286 121 15 chr4 170339574 170339773 -13948889 - L1MEc LINE L1 -4914 1482 1263 25 65 0 0 chr4 170340900 170340946 -13947716 + AT_rich Low_complexity Low_complexity 1 46 0 203 250 39 39 chr4 170341194 170341246 -13947416 + L2 LINE L2 3213 3264 -8 2646 222 31 10 chr4 170341249 170341835 -13946827 + MER90 LTR ERV1 3 600 -14 215 343 0 0 chr4 170341899 170341972 -13946690 + CT-rich Low_complexity Low_complexity 5 77 0 1513 246 63 95 chr4 170343535 170344512 -13944150 + LTR28 LTR ERV1 1 1009 -11 190 269 11 118 chr4 170344915 170344943 -13943719 - MIR SINE MIR -70 192 163 1751 187 7 7 chr4 170344943 170345248 -13943414 + AluSx SINE Alu 1 305 -7 190 269 11 118 chr4 170345248 170345312 -13943350 - MIR SINE MIR -99 163 110 9711 29 2 0 chr4 170345396 170347332 -13941330 - L1PA3 LINE L1 -2 6153 4215 193 262 95 63 chr4 170348377 170348503 -13940159 + MER5B DNA MER1_type 48 177 -1 183 374 24 12 chr4 170348594 170348677 -13939985 - L2 LINE L2 -50 3222 3139 1790 154 35 3 chr4 170349681 170349966 -13938696 + AluSx SINE Alu 7 300 -12 303 311 82 8 chr4 170350551 170350673 -13937989 + MIR SINE MIR 98 228 -34 803 238 6 0 chr4 170351160 170351332 -13937330 - AluJb SINE Alu -9 303 131 705 333 161 21 chr4 170352072 170352652 -13936010 + L2 LINE L2 2380 3041 -272 387 306 7 7 chr4 170352655 170352799 -13935863 + (TA)n Simple_repeat Simple_repeat 2 145 0 4048 25 8 0 chr4 170353246 170353727 -13934935 + L1PA3 LINE L1 5671 6155 0 22 35 0 0 chr4 170353856 170353885 -13934777 + AT_rich Low_complexity Low_complexity 1 29 0 464 271 74 44 chr4 170354217 170354420 -13934242 - MER76 LTR ERV 0 688 480 242 261 92 52 chr4 170354635 170354788 -13933874 - MIR SINE MIR 0 262 104 314 323 0 0 chr4 170356854 170356953 -13931709 - L1ME3A LINE L1 -277 5893 5795 314 298 168 0 chr4 170357019 170357150 -13931512 + MIR SINE MIR 7 159 -103 1985 113 6 52 chr4 170357659 170357987 -13930675 - AluSp SINE Alu 0 313 1 300 258 108 42 chr4 170358172 170358292 -13930370 + MLT1E3 LTR MaLR 1 128 -496 240 136 0 0 chr4 170358289 170358333 -13930329 + MLT1E1 LTR MaLR 611 654 0 * 2144 221 168 19 chr4 170358720 170359049 -13929613 + Tigger7 DNA MER2_type 1 280 -453 1501 200 30 3 chr4 170359049 170359349 -13929313 - AluJb SINE Alu -4 308 1 2144 221 168 19 chr4 170359349 170359597 -13929065 + Tigger7 DNA MER2_type 280 664 -69 439 122 12 12 chr4 170359594 170359676 -13928986 - Tigger3(Golem) DNA MER2_type -227 2802 2721 * 491 169 24 0 chr4 170359830 170359913 -13928749 + FRAM SINE Alu 62 146 -30 3336 197 53 10 chr4 170360008 170360710 -13927952 - MER44D DNA MER2_type -1 604 1 23 0 0 0 chr4 170361060 170361083 -13927579 + AT_rich Low_complexity Low_complexity 1 23 0 1600 179 21 3 chr4 170362024 170362314 -13926348 + AluJo SINE Alu 1 295 -17 24 0 0 0 chr4 170362689 170362713 -13925949 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr4 170362742 170362773 -13925889 + AT_rich Low_complexity Low_complexity 1 31 0 2103 240 81 57 chr4 170362817 170363003 -13925659 - L1MCb LINE L1 -4071 2493 2313 2136 112 0 0 chr4 170363003 170363299 -13925363 + AluY SINE Alu 1 296 -15 2103 240 81 57 chr4 170363299 170363378 -13925284 - L1MCb LINE L1 -4251 2313 2237 2021 124 0 0 chr4 170363378 170363661 -13925001 - AluSx SINE Alu -14 298 16 2103 240 81 57 chr4 170363661 170364144 -13924518 - L1MCb LINE L1 -4327 2237 1768 327 49 0 0 chr4 170364144 170364185 -13924477 + (TG)n Simple_repeat Simple_repeat 2 42 0 2103 240 81 57 chr4 170364185 170364482 -13924180 - L1MCb LINE L1 -4796 1768 1480 848 226 25 117 chr4 170364482 170364884 -13923778 - MLT1A1 LTR MaLR 0 365 1 2103 240 81 57 chr4 170364884 170365580 -13923082 - L1MCb LINE L1 -5084 1480 569 21 0 0 0 chr4 170365599 170365620 -13923042 + AT_rich Low_complexity Low_complexity 1 21 0 556 298 34 53 chr4 170365735 170365997 -13922665 - L1MCb LINE L1 -5480 565 309 520 314 55 41 chr4 170366606 170367116 -13921546 + L1M4 LINE L1 3243 3759 -2387 1682 193 37 0 chr4 170367133 170367516 -13921146 - L1MA8 LINE L1 -2507 3639 3243 * 7981 195 25 6 chr4 170367510 170369314 -13919348 + L1MA8 LINE L1 3641 5483 -743 2118 82 3 17 chr4 170369316 170369644 -13919018 + AluSc SINE Alu 1 309 0 3565 156 25 60 chr4 170369731 170370571 -13918091 + L1MA8 LINE L1 5476 6286 -5 273 362 13 7 chr4 170370582 170370734 -13917928 + L1M4 LINE L1 3770 3922 -2224 445 295 168 12 chr4 170371643 170371816 -13916846 + Charlie1a DNA MER1_type 1 200 -1255 2190 92 0 0 chr4 170371817 170372100 -13916562 + AluSc SINE Alu 1 283 -26 387 283 73 26 chr4 170372112 170372303 -13916359 + Charlie1a DNA MER1_type 269 468 -987 207 0 0 0 chr4 170373130 170373153 -13915509 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr4 170375171 170375192 -13913470 + AT_rich Low_complexity Low_complexity 1 21 0 1958 138 3 10 chr4 170375371 170375669 -13912993 - AluSx SINE Alu -16 296 1 200 194 16 32 chr4 170376066 170376128 -13912534 + (TATATG)n Simple_repeat Simple_repeat 5 65 0 22 99 0 0 chr4 170376128 170376199 -13912463 + AT_rich Low_complexity Low_complexity 1 71 0 1167 312 147 27 chr4 170377076 170377986 -13910676 - L2 LINE L2 -70 3243 2218 307 303 63 0 chr4 170377988 170378015 -13910647 - L1MA10 LINE L1 -4 6330 6304 2005 274 39 39 chr4 170378015 170378948 -13909714 - L1ME1 LINE L1 -28 6138 5209 257 212 101 71 chr4 170379878 170379977 -13908685 + MIR SINE MIR 89 190 -72 1725 166 20 3 chr4 170380231 170380527 -13908135 + AluSx SINE Alu 1 301 -11 24 0 0 0 chr4 170380563 170380587 -13908075 + AT_rich Low_complexity Low_complexity 1 24 0 229 340 57 50 chr4 170382140 170382281 -13906381 + MER5A DNA MER1_type 46 187 -2 827 203 41 35 chr4 170382319 170382516 -13906146 + MLT1B LTR MaLR 193 390 0 261 186 34 178 chr4 170382554 170382672 -13905990 + MER5A DNA MER1_type 86 186 -3 273 286 14 0 chr4 170382987 170383057 -13905605 - HERVL LTR ERVL -2136 3518 3448 273 250 45 0 chr4 170383739 170383827 -13904835 - HERVL LTR ERVL -3394 2370 2279 442 317 102 27 chr4 170384353 170384539 -13904123 - MIR3 SINE MIR -8 200 1 999 191 65 6 chr4 170384816 170385086 -13903576 + MLT1A1 LTR MaLR 1 340 -25 325 127 0 0 chr4 170387471 170387526 -13901136 - L1MC5 LINE L1 -722 7239 7185 * 379 217 102 24 chr4 170387519 170387685 -13900977 + L1ME4a LINE L1 5922 6100 -21 699 218 65 42 chr4 170387967 170388228 -13900434 - L1MC5 LINE L1 -58 7903 7637 1411 199 131 116 chr4 170388228 170388762 -13899900 - MLT1E LTR MaLR 0 593 1 238 252 19 29 chr4 170388763 170388866 -13899796 - L1MC5 LINE L1 -321 7640 7539 2393 72 0 3 chr4 170388972 170389276 -13899386 - AluY SINE Alu -8 303 1 460 332 32 44 chr4 170389314 170389564 -13899098 + L2 LINE L2 3066 3312 -1 272 338 0 0 chr4 170389918 170389986 -13898676 - L2 LINE L2 0 3313 3246 25 31 0 0 chr4 170390485 170390517 -13898145 + AT_rich Low_complexity Low_complexity 1 32 0 1228 290 38 1 chr4 170390733 170391340 -13897322 + L1ME1 LINE L1 4856 5489 -748 1223 114 16 5 chr4 170391341 170391525 -13897137 + AluSp SINE Alu 111 296 -17 1020 266 59 84 chr4 170391525 170392263 -13896399 + L1ME1 LINE L1 5478 6176 -2 743 245 52 37 chr4 170392275 170392693 -13895969 + L1MC3 LINE L1 5006 5427 -739 708 227 64 41 chr4 170392844 170393016 -13895646 + MER20 DNA MER1_type 44 219 0 402 21 0 0 chr4 170393126 170393173 -13895489 + (CA)n Simple_repeat Simple_repeat 2 48 0 239 216 29 49 chr4 170393331 170393433 -13895229 - L1MEc LINE L1 -4927 1469 1370 398 259 75 34 chr4 170393663 170393956 -13894706 - L1MEc LINE L1 -5222 1174 870 2264 274 52 60 chr4 170394170 170395099 -13893563 + L1MC3 LINE L1 5745 6661 -1124 333 0 0 0 chr4 170395099 170395136 -13893526 + (TG)n Simple_repeat Simple_repeat 2 38 0 2264 274 52 60 chr4 170395136 170395526 -13893136 + L1MC3 LINE L1 6661 7053 -732 5726 158 15 15 chr4 170395644 170397319 -13891343 - L1MA2 LINE L1 -122 6182 4509 3968 101 40 2 chr4 170397319 170397902 -13890760 - LTR14B LTR ERVK 0 608 4 5726 158 15 15 chr4 170397902 170398078 -13890584 - L1MA2 LINE L1 -1795 4509 4326 1849 154 3 22 chr4 170398078 170398389 -13890273 + AluY SINE Alu 1 305 -6 5726 158 15 15 chr4 170398389 170398483 -13890179 - L1MA2 LINE L1 -1978 4326 4234 532 339 137 36 chr4 170398631 170399136 -13889526 + HAL1b LINE L1 251 806 -542 1412 248 12 17 chr4 170399156 170399571 -13889091 + L1M4 LINE L1 4448 4860 -1286 324 311 70 33 chr4 170399625 170399927 -13888735 + L1 LINE L1 4304 4616 -1530 27 49 0 0 chr4 170400555 170400596 -13888066 + AT_rich Low_complexity Low_complexity 1 41 0 2571 226 14 17 chr4 170400939 170401533 -13887129 - L1MA2 LINE L1 -2035 4111 3520 922 86 0 0 chr4 170401534 170401651 -13887011 - AluY SINE Alu -9 302 186 1414 158 16 24 chr4 170401660 170401906 -13886756 + THE1C LTR MaLR 132 375 0 1303 201 31 3 chr4 170401907 170402195 -13886467 + L1MB1 LINE L1 5873 6168 0 248 351 0 0 chr4 170402511 170402588 -13886074 + L2 LINE L2 3178 3254 -18 188 378 27 18 chr4 170402778 170402889 -13885773 - MIR3 SINE MIR -52 156 45 356 215 25 0 chr4 170404114 170404193 -13884469 + MLT1F1 LTR MaLR 45 125 -442 1608 255 62 36 chr4 170404197 170404749 -13883913 + L1MD3 LINE L1 7407 7972 -23 442 249 158 28 chr4 170405330 170405420 -13883242 + LTR33 LTR ERVL 228 305 -216 2301 133 20 23 chr4 170405420 170405810 -13882852 + MLT1B LTR MaLR 1 389 -1 442 249 158 28 chr4 170405810 170405896 -13882766 + LTR33 LTR ERVL 305 427 -94 1757 111 3 34 chr4 170406041 170406332 -13882330 + L1PB1 LINE L1 5867 6148 -3 226 237 113 21 chr4 170407913 170408010 -13880652 + MIR SINE MIR 147 252 -10 2269 105 0 0 chr4 170408737 170409043 -13879619 + AluSc SINE Alu 1 306 -3 368 329 76 49 chr4 170409743 170410111 -13878551 - HERVL LTR ERVL -1700 3954 3577 258 307 69 0 chr4 170410506 170410651 -13878011 + L1ME LINE L1 5458 5612 -552 255 177 0 0 chr4 170410680 170410742 -13877920 + GA-rich Low_complexity Low_complexity 2 63 0 1574 182 34 45 chr4 170411017 170411396 -13877266 - THE1C LTR MaLR 0 375 1 1646 162 150 6 chr4 170411397 170411724 -13876938 - MSTA LTR MaLR -48 380 7 3207 154 2 29 chr4 170411726 170412130 -13876532 - MSTA-int LTR MaLR -32 1548 1134 2064 135 14 20 chr4 170412130 170412485 -13876177 - THE1A LTR MaLR -2 353 1 10382 119 6 13 chr4 170412485 170414076 -13874586 - THE1A-int LTR MaLR 0 1580 1 2194 141 8 6 chr4 170414076 170414430 -13874232 - THE1A LTR MaLR 0 355 1 3207 154 2 29 chr4 170414430 170414573 -13874089 - MSTA-int LTR MaLR -443 1137 1014 * 8888 144 40 22 chr4 170414568 170414975 -13873687 + L1 LINE L1 1720 2118 -5447 1603 103 91 0 chr4 170414975 170415266 -13873396 - AluSg SINE Alu 0 340 29 8888 144 40 22 chr4 170415266 170416500 -13872162 + L1 LINE L1 2118 3391 -4174 6322 223 64 13 chr4 170416620 170418949 -13869713 + L1M1 LINE L1 3020 5475 -2090 1643 205 11 22 chr4 170418961 170419322 -13869340 + L1 LINE L1 5259 5615 -1950 23 0 0 0 chr4 170419635 170419658 -13869004 + AT_rich Low_complexity Low_complexity 1 23 0 403 275 150 50 chr4 170420135 170420295 -13868367 - MER5A DNA MER1_type 0 189 14 2069 113 0 0 chr4 170420406 170420712 -13867950 + AluSx SINE Alu 1 306 0 2565 226 76 53 chr4 170420747 170422206 -13866456 - L1MD1 LINE L1 -16 6226 4740 27459 136 10 68 chr4 170422210 170427568 -13861094 - L1P LINE L1 -1101 5045 1 233 250 0 0 chr4 170428145 170428197 -13860465 - MER5A DNA MER1_type -83 106 55 34 0 0 0 chr4 170428340 170428374 -13860288 + AT_rich Low_complexity Low_complexity 1 34 0 5091 58 17 3 chr4 170428918 170429571 -13859091 - L1PA7 LINE L1 0 6154 5493 367 300 15 8 chr4 170430254 170430384 -13858278 + MARNA DNA Mariner 143 273 -313 22 56 0 0 chr4 170430953 170430989 -13857673 + AT_rich Low_complexity Low_complexity 1 36 0 502 284 76 15 chr4 170431022 170431219 -13857443 + MIR SINE MIR 54 262 0 24 32 0 0 chr4 170431356 170431387 -13857275 + AT_rich Low_complexity Low_complexity 1 31 0 32 43 0 0 chr4 170432467 170432513 -13856149 + AT_rich Low_complexity Low_complexity 1 46 0 266 256 35 0 chr4 170432965 170433051 -13855611 + L1MC/D LINE L1 5693 5781 -2027 26 30 0 0 chr4 170433066 170433099 -13855563 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr4 170435090 170435114 -13853548 + AT_rich Low_complexity Low_complexity 1 24 0 197 339 46 54 chr4 170435756 170435886 -13852776 - L2 LINE L2 -555 2759 2631 24 53 0 0 chr4 170436171 170436209 -13852453 + AT_rich Low_complexity Low_complexity 1 38 0 2080 122 0 0 chr4 170436234 170436528 -13852134 - AluSx SINE Alu -17 295 2 2549 246 46 58 chr4 170436620 170438671 -13849991 + L1MCb LINE L1 210 2399 -4346 2392 276 103 12 chr4 170438744 170439865 -13848797 + L1M4 LINE L1 3978 5200 -946 21 71 0 0 chr4 170439995 170440037 -13848625 + AT_rich Low_complexity Low_complexity 1 42 0 2188 151 31 14 chr4 170440931 170441289 -13847373 + THE1B LTR MaLR 1 364 0 10961 106 12 16 chr4 170441297 170442868 -13845794 + THE1B-int LTR MaLR 10 1574 -6 2229 138 28 14 chr4 170442872 170443226 -13845436 + THE1B LTR MaLR 4 362 -2 222 281 16 16 chr4 170443395 170443459 -13845203 - MER5A DNA MER1_type -124 65 2 284 315 16 24 chr4 170443657 170443784 -13844878 - MLT1K LTR MaLR -27 561 436 319 264 56 62 chr4 170444299 170444443 -13844219 - MER5A DNA MER1_type 0 189 47 1606 259 88 34 chr4 170445091 170445685 -13842977 - MLT1E2 LTR MaLR 0 626 1 262 152 0 0 chr4 170445860 170445906 -13842756 - L1MC4 LINE L1 -1339 6703 6658 240 183 67 0 chr4 170445906 170445966 -13842696 + (CATATA)n Simple_repeat Simple_repeat 2 65 0 29 0 0 0 chr4 170447000 170447029 -13841633 + AT_rich Low_complexity Low_complexity 1 29 0 215 302 62 16 chr4 170448462 170448591 -13840071 + MIR SINE MIR 86 220 -42 983 251 44 33 chr4 170449049 170449324 -13839338 - MLT1E2 LTR MaLR -348 278 1 1672 216 46 27 chr4 170449474 170449886 -13838776 + MER70B LTR ERVL 92 511 -67 234 277 15 15 chr4 170450356 170450421 -13838241 - L2 LINE L2 0 3272 3208 263 350 88 8 chr4 170450423 170450686 -13837976 + LTR33 LTR ERVL 24 307 -214 528 303 6 11 chr4 170450700 170450875 -13837787 - LTR40c LTR ERVL -277 188 15 2010 162 126 5 chr4 170451169 170451551 -13837111 - MSTA LTR MaLR 0 428 1 1738 172 39 12 chr4 170451665 170452002 -13836660 + MER7A DNA MER2_type 2 345 -1 262 278 62 52 chr4 170452193 170452290 -13836372 + L2 LINE L2 3200 3297 -16 2716 94 8 5 chr4 170452323 170452697 -13835965 - THE1C LTR MaLR 0 375 1 232 273 38 153 chr4 170453677 170453886 -13834776 - MIR SINE MIR -61 201 17 200 67 0 133 chr4 170454433 170454478 -13834184 + (T)n Simple_repeat Simple_repeat 1 39 0 560 288 96 15 chr4 170454932 170455130 -13833532 + MIR SINE MIR 1 214 -48 2041 81 7 7 chr4 170455664 170455935 -13832727 + AluY SINE Alu 22 292 -19 229 276 135 41 chr4 170456515 170456685 -13831977 + L2 LINE L2 3119 3304 -9 313 364 55 6 chr4 170457135 170457300 -13831362 + HAL1b LINE L1 330 502 -846 1467 193 0 29 chr4 170508838 170509149 -13779513 + AluJo SINE Alu 1 302 -10 188 67 33 0 chr4 170509515 170509545 -13779117 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 21 36 0 0 chr4 170511620 170511648 -13777014 + AT_rich Low_complexity Low_complexity 1 28 0 1887 169 55 42 chr4 170511889 170512436 -13776226 - MLT2A2 LTR ERVL 0 554 1 2251 120 0 0 chr4 170513069 170513378 -13775284 - AluSx SINE Alu -3 309 1 2227 104 0 3 chr4 170515512 170515810 -13772852 - AluSx SINE Alu -13 299 3 213 139 0 0 chr4 170515931 170515974 -13772688 + (TC)n Simple_repeat Simple_repeat 1 43 0 2234 279 17 41 chr4 170516112 170517007 -13771655 - L1ME1 LINE L1 -26 6140 5268 2258 129 10 6 chr4 170517007 170517362 -13771300 + THE1B LTR MaLR 1 417 -9 754 255 178 38 chr4 170517450 170517929 -13770733 - L1ME1 LINE L1 -897 5249 4704 440 327 25 10 chr4 170518277 170518476 -13770186 + MIR SINE MIR 61 262 0 1663 186 44 28 chr4 170518606 170518966 -13769696 + MER47A DNA MER2_type 1 366 0 2246 104 0 0 chr4 170521823 170522120 -13766542 + AluSg SINE Alu 1 297 -13 241 337 102 0 chr4 170522201 170522299 -13766363 - MIR SINE MIR -58 150 43 197 276 83 119 chr4 170522421 170522783 -13765879 + L2 LINE L2 177 525 -2789 566 264 0 29 chr4 170523124 170523291 -13765371 - AluJb SINE Alu 0 311 149 250 333 36 55 chr4 170523525 170523690 -13764972 + L2 LINE L2 3152 3313 0 21 0 0 0 chr4 170525097 170525118 -13763544 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 170525522 170525550 -13763112 + AT_rich Low_complexity Low_complexity 1 28 0 246 62 0 0 chr4 170525669 170525701 -13762961 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 252 59 0 0 chr4 170525738 170525772 -13762890 + (CA)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr4 170526718 170526739 -13761923 + AT_rich Low_complexity Low_complexity 1 21 0 652 250 0 0 chr4 170528757 170528905 -13759757 + FRAM SINE Alu 1 148 -28 420 200 0 0 chr4 170528901 170528976 -13759686 + AluJ/FRAM SINE Alu 214 288 -24 * 335 0 73 0 chr4 170528983 170529038 -13759624 + (TA)n Simple_repeat Simple_repeat 1 59 0 234 0 0 0 chr4 170529037 170529063 -13759599 + (CA)n Simple_repeat Simple_repeat 2 27 0 * 1326 205 60 137 chr4 170529620 170530166 -13758496 - MLT1D LTR MaLR -1 504 1 1383 207 42 25 chr4 170530464 170530869 -13757793 - LTR37A LTR ERV1 -3 423 12 214 141 70 0 chr4 170531104 170531175 -13757487 + (TTAA)n Simple_repeat Simple_repeat 1 76 0 25 0 0 0 chr4 170531233 170531258 -13757404 + AT_rich Low_complexity Low_complexity 1 25 0 261 303 81 10 chr4 170531408 170531507 -13757155 + L2 LINE L2 3207 3312 -1 1292 234 168 46 chr4 170531656 170532221 -13756441 - MLT1E1 LTR MaLR -2 652 19 1991 112 3 7 chr4 170532371 170532676 -13755986 + L1PB1 LINE L1 5846 6149 -2 23 0 0 0 chr4 170532676 170532699 -13755963 + AT_rich Low_complexity Low_complexity 1 23 0 197 244 22 0 chr4 170532942 170532987 -13755675 + MIR3 SINE MIR 121 166 -42 23 54 0 0 chr4 170533162 170533199 -13755463 + AT_rich Low_complexity Low_complexity 1 37 0 199 349 193 24 chr4 170535114 170535363 -13753299 + L3 LINE CR1 306 596 -981 232 271 65 28 chr4 170535691 170535798 -13752864 + L1M4b LINE L1 1333 1443 -5416 248 344 83 42 chr4 170536597 170536789 -13751873 + L2 LINE L2 2286 2485 -829 471 346 62 29 chr4 170537115 170537424 -13751238 + L3 LINE CR1 1104 1422 -155 25 0 0 0 chr4 170538599 170538624 -13750038 + AT_rich Low_complexity Low_complexity 1 25 0 29765 47 5 1 chr4 170538912 170543443 -13745219 + L1PA5 LINE L1 1594 6143 -11 234 0 0 0 chr4 170543811 170543837 -13744825 + (TG)n Simple_repeat Simple_repeat 1 26 0 360 316 87 51 chr4 170543920 170544195 -13744467 - HAL1b LINE L1 -632 716 432 242 203 81 0 chr4 170544308 170544382 -13744280 - L1ME4a LINE L1 -96 6025 5946 2816 198 14 18 chr4 170544812 170545433 -13743229 - L1MB8 LINE L1 -6 6172 5554 964 256 36 44 chr4 170545439 170545799 -13742863 - L1MB8 LINE L1 -765 5381 5025 1225 279 99 29 chr4 170545896 170546380 -13742282 - MER77 LTR ERV1 -47 558 41 1056 208 29 38 chr4 170546419 170546732 -13741930 - L1MB8 LINE L1 -1973 4173 3864 774 214 24 74 chr4 170546731 170547104 -13741558 - L1MB8 LINE L1 -2490 3656 3316 * 994 244 33 36 chr4 170547112 170547415 -13741247 + MLT1C LTR MaLR 162 463 -4 4693 236 28 49 chr4 170547419 170548835 -13739827 + MLT1C-int LTR MaLR 1 1734 -1 579 206 122 37 chr4 170548851 170549065 -13739597 + MLT1C LTR MaLR 9 240 -227 232 189 38 19 chr4 170549113 170549166 -13739496 + MLT1C LTR MaLR 414 467 0 740 310 94 56 chr4 170549357 170549528 -13739134 + L2 LINE L2 2565 2728 -585 2546 189 27 21 chr4 170549528 170550040 -13738622 + MLT2B2 LTR ERVL 1 515 0 740 310 94 56 chr4 170550040 170550593 -13738069 + L2 LINE L2 2728 3312 -1 224 226 19 0 chr4 170550842 170550895 -13737767 + GA-rich Low_complexity Low_complexity 2 55 0 396 347 92 38 chr4 170552799 170553168 -13735494 - L1ME LINE L1 -461 5660 5272 28 61 0 0 chr4 170553356 170553405 -13735257 + AT_rich Low_complexity Low_complexity 1 49 0 256 153 31 61 chr4 170553573 170553671 -13734991 + (TTATA)n Simple_repeat Simple_repeat 1 95 0 1163 292 74 41 chr4 170553808 170554442 -13734220 - L1MC4a LINE L1 -877 6931 6277 1907 249 82 42 chr4 170554609 170555281 -13733381 + L1MC3 LINE L1 6123 6821 -964 556 174 216 20 chr4 170555343 170555547 -13733115 - L1MD3 LINE L1 -673 7112 6871 307 220 111 7 chr4 170556356 170556462 -13732200 - L1ME3A LINE L1 -54 6116 6000 216 0 0 0 chr4 170556617 170556641 -13732021 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 755 82 0 16 chr4 170556733 170556855 -13731807 + (AATAG)n Simple_repeat Simple_repeat 3 122 0 13300 208 43 16 chr4 170556969 170558486 -13730176 - L1MA6 LINE L1 0 7719 6244 302 0 26 0 chr4 170558486 170558524 -13730138 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 13300 208 43 16 chr4 170558524 170562130 -13726532 - L1MA6 LINE L1 -1475 6244 2454 843 266 18 0 chr4 170562129 170562347 -13726315 - L1 LINE L1 -3382 2764 2543 * 1060 280 35 7 chr4 170562352 170562816 -13725846 - L1MA6 LINE L1 -4082 2483 2007 1587 301 90 43 chr4 170563130 170563941 -13724721 - L1MA6 LINE L1 -6481 1008 13 474 290 40 11 chr4 170563942 170564118 -13724544 - L1ME LINE L1 -506 5656 5476 258 278 41 10 chr4 170564224 170564321 -13724341 + MER21B LTR ERV1 615 714 -149 21 36 0 0 chr4 170565164 170565192 -13723470 + AT_rich Low_complexity Low_complexity 1 28 0 2106 108 7 14 chr4 170566253 170566550 -13722112 - AluSc SINE Alu -11 298 4 23 33 0 0 chr4 170566775 170566805 -13721857 + AT_rich Low_complexity Low_complexity 1 30 0 249 254 47 30 chr4 170567833 170567940 -13720722 + MLT1L LTR MaLR 75 286 -267 276 289 33 46 chr4 170568235 170568387 -13720275 - L2 LINE L2 -5 3308 3159 383 285 53 26 chr4 170568423 170568574 -13720088 + L1MEc LINE L1 44 198 -6198 * 875 161 85 92 chr4 170568562 170568879 -13719783 + L1ME1 LINE L1 5648 5962 -204 2184 107 0 19 chr4 170570522 170570841 -13717821 + AluSq SINE Alu 1 313 0 21 36 0 0 chr4 170571091 170571119 -13717543 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr4 170571751 170571783 -13716879 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr4 170571804 170571829 -13716833 + AT_rich Low_complexity Low_complexity 1 25 0 1915 138 0 0 chr4 170571913 170572235 -13716427 + AluSx SINE Alu 1 322 0 2707 212 72 69 chr4 170573118 170574019 -13714643 + L1MC4 LINE L1 6762 7665 -377 486 248 132 52 chr4 170574048 170574298 -13714364 + L1MC4 LINE L1 6888 7157 -885 243 278 0 0 chr4 170574424 170574478 -13714184 - MLT1G1 LTR MaLR -539 56 3 414 272 31 19 chr4 170574527 170574689 -13713973 - L1M4 LINE L1 -1221 4925 4762 418 269 87 5 chr4 170574964 170575172 -13713490 - L1M4 LINE L1 -1532 4614 4390 324 378 0 9 chr4 170575915 170576026 -13712636 + MIR SINE MIR 23 132 -130 261 0 0 0 chr4 170576060 170576089 -13712573 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 377 274 96 34 chr4 170577225 170577371 -13711291 + MIR3 SINE MIR 20 174 -34 248 188 72 0 chr4 170577456 170577525 -13711137 + L1MA9 LINE L1 6173 6246 -66 229 384 0 0 chr4 170578026 170578112 -13710550 - L2 LINE L2 -1 3271 3186 2099 216 92 3 chr4 170578501 170578946 -13709716 - L1MA9 LINE L1 -31 6281 5769 1016 242 48 0 chr4 170578946 170579173 -13709489 + MER8 DNA MER2_type 1 238 -1 2099 216 92 3 chr4 170579173 170579303 -13709359 - L1MA9 LINE L1 -543 5769 5652 223 265 0 0 chr4 170579349 170579398 -13709264 + L2 LINE L2 3256 3304 -9 359 281 0 0 chr4 170579478 170579574 -13709088 - AluJ/FLAM SINE Alu -229 73 1 243 274 55 55 chr4 170579875 170580021 -13708641 + Charlie8 DNA MER1_type 90 235 -2182 207 0 0 0 chr4 170580156 170580179 -13708483 + (T)n Simple_repeat Simple_repeat 1 23 0 982 245 0 17 chr4 170580189 170580422 -13708240 - AluJo SINE Alu -83 229 1 46 78 0 0 chr4 170580549 170580651 -13708011 + AT_rich Low_complexity Low_complexity 1 102 0 1776 142 44 0 chr4 170580651 170580949 -13707713 - AluSx SINE Alu 0 310 1 320 312 87 7 chr4 170581208 170581346 -13707316 + MER20B DNA MER1_type 52 200 -583 1015 229 138 68 chr4 170581502 170581849 -13706813 + MER20B DNA MER1_type 211 609 -174 2001 110 3 28 chr4 170581849 170582140 -13706522 - AluSg SINE Alu -26 284 1 1015 229 138 68 chr4 170582140 170582321 -13706341 + MER20B DNA MER1_type 609 776 -7 478 252 180 14 chr4 170582531 170582670 -13705992 + MER5A DNA MER1_type 26 187 -2 186 71 0 0 chr4 170583171 170583199 -13705463 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 2176 121 6 16 chr4 170585500 170585815 -13702847 + AluSx SINE Alu 1 312 0 2094 99 4 0 chr4 170587252 170587525 -13701137 - AluSx SINE Alu -13 299 26 913 208 43 92 chr4 170587564 170587988 -13700674 + MLT2D LTR ERVL 1 417 -47 35 24 0 0 chr4 170588165 170588207 -13700455 + AT_rich Low_complexity Low_complexity 1 42 0 439 330 13 19 chr4 170588264 170588579 -13700083 + AluSp SINE Alu 1 313 0 26 50 0 0 chr4 170588610 170588650 -13700012 + AT_rich Low_complexity Low_complexity 1 40 0 248 224 0 0 chr4 170589674 170589723 -13698939 - MIR SINE MIR -30 232 184 2186 129 0 3 chr4 170593260 170593570 -13695092 + AluSc SINE Alu 1 309 0 194 271 21 0 chr4 170593684 170593732 -13694930 - MIR SINE MIR -94 168 120 265 275 44 0 chr4 170594338 170594429 -13694233 - L1ME LINE L1 -485 5636 5542 233 273 0 45 chr4 170595050 170595138 -13693524 - L1MC4 LINE L1 -1340 6702 6619 299 286 99 47 chr4 170595349 170595712 -13692950 - L1MC4a LINE L1 -1307 6501 6120 574 278 128 56 chr4 170595865 170596405 -13692257 - L1MC4a LINE L1 -1911 5897 5319 241 316 90 16 chr4 170596467 170596711 -13691951 - HAL1 LINE L1 -962 1545 1284 1731 187 94 19 chr4 170597677 170598051 -13690611 + MSTC LTR MaLR 23 424 -4 2138 149 11 19 chr4 170598194 170598570 -13690092 - MER83C LTR ERV1 0 373 1 2083 177 16 18 chr4 170598587 170598998 -13689664 - MER83C-int LTR ERV1 -21 8064 4525 3467 253 64 41 chr4 170599143 170600109 -13688553 - MER83C-int LTR ERV1 -3872 1008 266 2417 76 0 22 chr4 170600109 170600423 -13688239 + AluY SINE Alu 2 308 -3 3467 253 64 41 chr4 170600423 170600684 -13687978 - MER83C-int LTR ERV1 -4614 266 12 1823 177 11 32 chr4 170600684 170601062 -13687600 - MER83C LTR ERV1 0 373 4 612 313 178 31 chr4 170601650 170602094 -13686568 - L2 LINE L2 -1 3312 2804 324 347 88 37 chr4 170602552 170603065 -13685597 + L2 LINE L2 2082 2620 -694 313 328 17 25 chr4 170603467 170603586 -13685076 - L2 LINE L2 -4 3309 3192 2003 100 3 28 chr4 170604093 170604382 -13684280 + AluSx SINE Alu 1 282 -30 24 0 0 0 chr4 170604671 170604695 -13683967 + AT_rich Low_complexity Low_complexity 1 24 0 950 225 41 5 chr4 170604975 170605244 -13683418 + MER21B LTR ERV1 35 345 -518 1389 128 47 8 chr4 170606741 170606975 -13681687 + THE1C LTR MaLR 1 243 -132 2149 109 0 0 chr4 170607777 170608097 -13680565 + AluSx SINE Alu 1 320 0 188 67 33 0 chr4 170608654 170608684 -13679978 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 1745 127 42 14 chr4 170608689 170608973 -13679689 - AluSx SINE Alu -20 292 1 22 0 0 0 chr4 170609141 170609163 -13679499 + AT_rich Low_complexity Low_complexity 1 22 0 1589 149 31 78 chr4 170609555 170609876 -13678786 - AluJo SINE Alu 0 312 7 22 35 0 0 chr4 170610283 170610312 -13678350 + AT_rich Low_complexity Low_complexity 1 29 0 2198 117 13 0 chr4 170610890 170611197 -13677465 - AluSq SINE Alu -2 311 1 704 132 18 0 chr4 170611289 170611403 -13677259 - LTR9B LTR ERV1 -84 560 445 216 195 37 37 chr4 170611700 170611782 -13676880 + (TTA)n Simple_repeat Simple_repeat 2 83 0 30 77 0 0 chr4 170613501 170613566 -13675096 + AT_rich Low_complexity Low_complexity 1 65 0 1238 253 10 10 chr4 170613778 170614074 -13674588 - AluJo SINE Alu -6 296 1 1896 185 43 37 chr4 170614426 170614863 -13673799 - L1MA10 LINE L1 -1 6333 5894 1795 182 0 0 chr4 170615344 170615635 -13673027 + AluSx SINE Alu 1 291 -21 243 327 36 65 chr4 170615691 170615859 -13672803 - L2 LINE L2 -2 3311 3149 180 176 0 0 chr4 170617247 170617281 -13671381 + (CATATA)n Simple_repeat Simple_repeat 6 39 0 228 310 52 17 chr4 170617410 170617642 -13671020 + L1ME LINE L1 5602 5841 -280 28 0 0 0 chr4 170617866 170617894 -13670768 + AT_rich Low_complexity Low_complexity 1 28 0 649 141 0 0 chr4 170617998 170618090 -13670572 - FRAM SINE Alu -77 99 8 2129 117 0 0 chr4 170618768 170619088 -13669574 - AluSq SINE Alu 0 320 1 2100 134 10 0 chr4 170619407 170619714 -13668948 - AluSx SINE Alu -2 310 1 24 53 0 0 chr4 170620621 170620659 -13668003 + AT_rich Low_complexity Low_complexity 1 38 0 22 70 0 0 chr4 170620791 170620834 -13667828 + AT_rich Low_complexity Low_complexity 1 43 0 1422 158 22 18 chr4 170621672 170621944 -13666718 + L1PA16 LINE L1 5876 6148 -18 509 335 150 13 chr4 170622207 170622580 -13666082 - L2 LINE L2 -1 3312 2889 1681 231 108 33 chr4 170622638 170623066 -13665596 + MLT2B1 LTR ERVL 2 461 -59 201 133 0 0 chr4 170623066 170623096 -13665566 + (CA)n Simple_repeat Simple_repeat 1 30 0 232 37 0 0 chr4 170623309 170623336 -13665326 + MLT2B1 LTR ERVL 487 513 -2 26 30 0 0 chr4 170623513 170623546 -13665116 + AT_rich Low_complexity Low_complexity 1 33 0 943 256 107 15 chr4 170623568 170623959 -13664703 + LTR37B LTR ERV1 1 427 -41 33 25 0 0 chr4 170623959 170623999 -13664663 + AT_rich Low_complexity Low_complexity 1 40 0 261 149 0 0 chr4 170624496 170624543 -13664119 + MLT2C1 LTR ERVL 351 397 0 48 72 0 0 chr4 170624673 170624770 -13663892 + AT_rich Low_complexity Low_complexity 1 97 0 25 0 0 0 chr4 170624836 170624861 -13663801 + AT_rich Low_complexity Low_complexity 1 25 0 526 151 19 0 chr4 170626896 170627002 -13661660 + (TAGA)n Simple_repeat Simple_repeat 3 110 0 195 129 0 0 chr4 170628182 170628213 -13660449 + (TC)n Simple_repeat Simple_repeat 1 31 0 313 355 40 0 chr4 170628264 170628416 -13660246 + MLT1I LTR MaLR 50 207 -202 366 258 11 0 chr4 170628917 170629006 -13659656 + MER81 DNA DNA 20 109 -5 714 254 39 39 chr4 170629036 170629102 -13659560 - MER5A DNA MER1_type -3 186 121 2046 232 57 36 chr4 170629102 170629713 -13658949 + MLT1E3 LTR MaLR 1 624 0 714 254 39 39 chr4 170629713 170629827 -13658835 - MER5A DNA MER1_type -67 122 6 538 247 43 62 chr4 170630259 170630563 -13658099 - L1MC5 LINE L1 -33 7928 7631 241 240 30 10 chr4 170632046 170632146 -13656516 + (TA)n Simple_repeat Simple_repeat 2 103 0 230 118 0 0 chr4 170632933 170632967 -13655695 + MLT1J1 LTR MaLR 412 445 -1 3835 39 0 0 chr4 170633030 170633507 -13655155 + L1PA4 LINE L1 5681 6157 0 339 260 70 144 chr4 170634757 170635084 -13653578 + MLT1J1 LTR MaLR 1 303 -143 1551 127 90 22 chr4 170635138 170635405 -13653257 + LTR12 LTR ERV1 1 285 -429 275 220 33 33 chr4 170635406 170635497 -13653165 + LTR30 LTR ERV1 553 643 -79 698 120 0 0 chr4 170635497 170635597 -13653065 + LTR12 LTR ERV1 480 579 -135 301 281 8 50 chr4 170635597 170635718 -13652944 + MLT1J1 LTR MaLR 329 444 -2 554 237 0 0 chr4 170636412 170636543 -13652119 - FRAM SINE Alu -1 175 45 223 68 0 45 chr4 170636685 170636729 -13651933 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 313 181 139 28 chr4 170636755 170636827 -13651835 + MER101B LTR ERV1 1 80 -490 1555 83 0 107 chr4 170636828 170637080 -13651582 + AluY SINE Alu 1 225 -86 2066 123 3 3 chr4 170637655 170637955 -13650707 - AluSx SINE Alu -12 300 1 860 190 165 24 chr4 170638800 170639189 -13649473 + LTR49 LTR ERV1 160 595 0 2332 59 0 0 chr4 170639218 170639507 -13649155 + AluY SINE Alu 1 289 -22 245 258 48 0 chr4 170639690 170639752 -13648910 - MIR SINE MIR -79 183 119 20018 47 8 2 chr4 170641045 170643593 -13645069 + L1P LINE L1 2706 5268 -878 1634 141 0 15 chr4 170644214 170644483 -13644179 - L1PA16 LINE L1 -3 6163 5899 270 167 0 56 chr4 170645993 170646047 -13642615 + MER66B LTR ERV1 295 345 -141 1399 90 5 0 chr4 170646349 170646566 -13642096 - AluSg/x SINE Alu 0 311 94 1741 237 59 23 chr4 170647981 170648674 -13639988 - L1ME1 LINE L1 -318 5848 5126 521 259 67 9 chr4 170648698 170648997 -13639665 + L1ME2 LINE L1 5855 6333 -1 23 33 0 0 chr4 170649770 170649800 -13638862 + AT_rich Low_complexity Low_complexity 1 30 0 2340 107 0 0 chr4 170650326 170650636 -13638026 + AluSg SINE Alu 1 310 0 360 274 83 83 chr4 170651367 170651739 -13636923 + L1MCc LINE L1 18 389 -6034 205 232 18 0 chr4 170652653 170652709 -13635953 + L2 LINE L2 3196 3252 -61 221 264 170 47 chr4 170652902 170653008 -13635654 - MIR SINE MIR -70 192 74 295 371 0 46 chr4 170654257 170654451 -13634211 - MIR SINE MIR -12 250 66 29 47 0 0 chr4 170655027 170655070 -13633592 + AT_rich Low_complexity Low_complexity 1 43 0 22 88 0 0 chr4 170655107 170655164 -13633498 + AT_rich Low_complexity Low_complexity 1 57 0 1978 59 42 63 chr4 170655458 170655776 -13632886 - AluY SINE Alu 0 313 2 283 230 191 24 chr4 170656241 170656367 -13632295 + L1ME LINE L1 5644 5790 -376 394 343 83 20 chr4 170656527 170656926 -13631736 - MERVL LTR ERVL -2186 3299 2876 26 0 0 0 chr4 170656950 170656976 -13631686 + AT_rich Low_complexity Low_complexity 1 26 0 1100 344 66 31 chr4 170657058 170657953 -13630709 - MERVL LTR ERVL -3054 2710 1785 3398 83 17 2 chr4 170658191 170658672 -13629990 + L1PA13 LINE L1 5673 6160 -3 263 212 94 12 chr4 170659189 170659274 -13629388 - L1MDa LINE L1 -4730 1991 1900 369 283 107 55 chr4 170659291 170659606 -13629056 - L1MDa LINE L1 -938 1963 1559 220 261 67 67 chr4 170660353 170660472 -13628190 - L2 LINE L2 -97 3216 3098 693 293 34 46 chr4 170660713 170660952 -13627710 + MIR SINE MIR 1 236 -26 21 0 0 0 chr4 170661007 170661028 -13627634 + AT_rich Low_complexity Low_complexity 1 21 0 1414 199 6 43 chr4 170661204 170661383 -13627279 - AluJo SINE Alu -2 310 147 2139 121 3 6 chr4 170661383 170661696 -13626966 - AluSx SINE Alu 0 312 1 1414 199 6 43 chr4 170661696 170661838 -13626824 - AluJo SINE Alu -165 147 1 269 297 0 90 chr4 170662105 170662216 -13626446 - L1MDa LINE L1 -5599 931 831 1947 163 106 7 chr4 170662549 170662985 -13625677 - L1MB8 LINE L1 -6 6172 5694 248 169 42 70 chr4 170663023 170663094 -13625568 - L1MB8 LINE L1 -1045 5101 5033 1062 47 0 0 chr4 170664222 170664349 -13624313 + AluY SINE Alu 1 127 -184 243 60 60 0 chr4 170664349 170664399 -13624263 + A-rich Low_complexity Low_complexity 2 54 0 22 35 0 0 chr4 170666158 170666187 -13622475 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 170667052 170667080 -13621582 + AT_rich Low_complexity Low_complexity 1 28 0 460 330 129 56 chr4 170667574 170668108 -13620554 - MLT2F LTR ERVL -52 611 39 2166 117 0 0 chr4 170668390 170668688 -13619974 + AluSq SINE Alu 1 298 -15 6643 72 10 1 chr4 170720087 170721007 -13567655 + L1PA7 LINE L1 5220 6147 -7 225 0 0 0 chr4 170721007 170721032 -13567630 + (GA)n Simple_repeat Simple_repeat 2 26 0 2156 103 0 0 chr4 170721071 170721382 -13567280 + AluSc SINE Alu 1 311 0 581 281 31 31 chr4 170721422 170721618 -13567044 - L2 LINE L2 -265 3048 2853 983 247 31 25 chr4 170722048 170722414 -13566248 - L1M3 LINE L1 -640 5609 5242 62 58 0 0 chr4 170722417 170722521 -13566141 + AT_rich Low_complexity Low_complexity 1 104 0 1604 244 47 19 chr4 170722523 170723035 -13565627 - L1M3 LINE L1 -981 5234 4709 22 35 0 0 chr4 170723047 170723076 -13565586 + AT_rich Low_complexity Low_complexity 1 29 0 1600 265 64 20 chr4 170723093 170724051 -13564611 - L1M3 LINE L1 -3407 2808 1836 620 129 40 10 chr4 170724118 170724219 -13564443 - MLT1A2 LTR MaLR 0 374 271 211 347 14 0 chr4 170724764 170724836 -13563826 + L2 LINE L2 3237 3309 -4 225 196 0 0 chr4 170725018 170725064 -13563598 + (TA)n Simple_repeat Simple_repeat 2 47 0 27 29 0 0 chr4 170725301 170725335 -13563327 + AT_rich Low_complexity Low_complexity 1 34 0 2119 176 18 38 chr4 170725387 170725830 -13562832 - Tigger2a DNA MER2_type 0 434 1 29 0 0 0 chr4 170725988 170726017 -13562645 + AT_rich Low_complexity Low_complexity 1 29 0 483 247 109 4 chr4 170726164 170726411 -13562251 + MER114 LTR ERV 137 409 -239 1127 279 44 6 chr4 170726445 170726760 -13561902 + L1M3e LINE L1 2 328 -6702 538 256 94 0 chr4 170726764 170726803 -13561859 + L1M3e LINE L1 2678 2712 -4395 180 0 0 0 chr4 170726803 170726823 -13561839 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 538 256 94 0 chr4 170726823 170726943 -13561719 + L1M3e LINE L1 2712 2852 -4255 3272 213 57 12 chr4 170726986 170727834 -13560828 + L1M3e LINE L1 4196 5081 -2025 2030 106 7 7 chr4 170728481 170728763 -13559899 + AluSx SINE Alu 14 295 -17 249 119 0 0 chr4 170730960 170731002 -13557660 + (TG)n Simple_repeat Simple_repeat 2 43 0 295 287 108 96 chr4 170731272 170731606 -13557056 + MLT1I LTR MaLR 46 383 -26 1763 221 36 8 chr4 170732167 170732551 -13556111 + L1MB1 LINE L1 5774 6168 0 1712 184 20 3 chr4 170732562 170732866 -13555796 + AluJo SINE Alu 3 311 -1 242 216 0 0 chr4 170732879 170732916 -13555746 + AluJ/monomer SINE Alu 5 41 -262 444 265 39 0 chr4 170732919 170733021 -13555641 + FAM SINE Alu 4 109 -76 37 23 0 0 chr4 170733038 170733082 -13555580 + AT_rich Low_complexity Low_complexity 1 44 0 24 53 0 0 chr4 170733121 170733159 -13555503 + AT_rich Low_complexity Low_complexity 1 38 0 239 137 20 39 chr4 170733444 170733495 -13555167 + CT-rich Low_complexity Low_complexity 4 53 0 892 210 110 0 chr4 170734106 170734306 -13554356 - MLT1A1 LTR MaLR -143 222 1 22 56 0 0 chr4 170735135 170735171 -13553491 + AT_rich Low_complexity Low_complexity 1 36 0 1553 68 0 0 chr4 170736499 170736689 -13551973 + AluY SINE Alu 35 224 -87 25 0 0 0 chr4 170737140 170737165 -13551497 + AT_rich Low_complexity Low_complexity 1 25 0 199 345 71 18 chr4 170738477 170738590 -13550072 + L2 LINE L2 3193 3311 -2 188 333 65 0 chr4 170739127 170739220 -13549442 + MIR SINE MIR 81 179 -83 21 0 0 0 chr4 170739475 170739496 -13549166 + AT_rich Low_complexity Low_complexity 1 21 0 617 296 15 15 chr4 170740085 170740284 -13548378 - MIR SINE MIR -1 261 63 208 324 130 83 chr4 170740673 170740997 -13547665 - L2 LINE L2 -424 2890 2552 879 332 30 42 chr4 170741015 170741512 -13547150 + LTR16C LTR ERVL 1 491 0 241 370 107 30 chr4 170741539 170741980 -13546682 - L2 LINE L2 -841 2473 1999 451 314 62 15 chr4 170743406 170743616 -13545046 + MIR SINE MIR 40 261 -1 21 36 0 0 chr4 170743672 170743700 -13544962 + AT_rich Low_complexity Low_complexity 1 28 0 2649 97 25 8 chr4 170744045 170744438 -13544224 - L1PA10 LINE L1 -14 6154 5755 207 114 0 0 chr4 170744956 170744991 -13543671 + (TTTTTG)n Simple_repeat Simple_repeat 1 35 0 615 162 17 0 chr4 170745419 170745536 -13543126 + L1MB3 LINE L1 6065 6183 0 20205 152 67 31 chr4 170745561 170748983 -13539679 - L1PA8A LINE L1 -27 6419 2603 1948 125 3 14 chr4 170748983 170749272 -13539390 - AluSg SINE Alu -24 286 1 20205 152 67 31 chr4 170749272 170751950 -13536712 - L1PA8A LINE L1 -3843 2603 23 2393 58 3 0 chr4 170753466 170753761 -13534901 - AluY SINE Alu -9 302 7 2207 104 0 7 chr4 170753766 170754064 -13534598 - AluSg SINE Alu -14 296 1 248 291 25 0 chr4 170754064 170754138 -13534524 - MER5A DNA MER1_type -113 76 1 281 278 120 30 chr4 170754212 170754345 -13534317 + MIR SINE MIR 118 262 0 1102 201 8 25 chr4 170754736 170754975 -13533687 + L1MCa LINE L1 6 240 -6186 405 70 0 0 chr4 170754977 170755034 -13533628 + (TC)n Simple_repeat Simple_repeat 2 58 0 797 218 40 31 chr4 170755042 170755267 -13533395 + MLT1E LTR MaLR 367 593 0 829 245 69 0 chr4 170756265 170756469 -13532193 + MER20 DNA MER1_type 1 218 -1 265 377 0 15 chr4 170756479 170756609 -13532053 + L2 LINE L2 2174 2301 -1013 641 167 47 40 chr4 170756854 170757004 -13531658 + L1MA9 LINE L1 4110 4260 -1886 * 4108 188 66 50 chr4 170756979 170757009 -13531653 + L1MA9 LINE L1 4642 4670 -1642 1686 143 204 8 chr4 170757009 170757367 -13531295 + MSTA LTR MaLR 1 428 0 4108 188 66 50 chr4 170757367 170758967 -13529695 + L1MA9 LINE L1 4670 6311 -1 26 0 0 0 chr4 170759270 170759296 -13529366 + AT_rich Low_complexity Low_complexity 1 26 0 723 203 50 33 chr4 170759506 170759747 -13528915 - L1M4 LINE L1 -1680 4466 4222 222 37 0 0 chr4 170759776 170759803 -13528859 + (TC)n Simple_repeat Simple_repeat 1 27 0 551 90 14 56 chr4 170759804 170759948 -13528714 + (TA)n Simple_repeat Simple_repeat 1 138 0 2230 122 0 0 chr4 170761847 170762159 -13526503 + AluSq SINE Alu 1 312 -1 1246 199 92 14 chr4 170762786 170763067 -13525595 - AluJo SINE Alu -8 304 2 480 250 81 71 chr4 170763109 170763711 -13524951 - L1MC5 LINE L1 -519 7442 6764 194 329 41 0 chr4 170763729 170763802 -13524860 - MIR3 SINE MIR -40 168 93 22 35 0 0 chr4 170763964 170763993 -13524669 + AT_rich Low_complexity Low_complexity 1 29 0 1856 152 23 13 chr4 170764256 170764565 -13524097 + AluSx SINE Alu 1 312 0 280 327 56 56 chr4 170764880 170765253 -13523409 - L1ME4a LINE L1 -187 5934 5562 1661 204 34 3 chr4 170765867 170766220 -13522442 - MER76 LTR ERV -324 364 1 184 299 69 35 chr4 170766658 170766745 -13521917 + MIR SINE MIR 161 250 -12 21 0 0 0 chr4 170767340 170767361 -13521301 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 170768061 170768085 -13520577 + AT_rich Low_complexity Low_complexity 1 24 0 5455 183 5 4 chr4 170769025 170770590 -13518072 - L1PA16 LINE L1 -9 6157 4591 24 0 0 0 chr4 170770835 170770859 -13517803 + AT_rich Low_complexity Low_complexity 1 24 0 31 58 0 0 chr4 170770915 170770967 -13517695 + AT_rich Low_complexity Low_complexity 1 52 0 27 0 0 0 chr4 170771370 170771397 -13517265 + AT_rich Low_complexity Low_complexity 1 27 0 239 219 81 8 chr4 170771649 170771772 -13516890 + (TTAA)n Simple_repeat Simple_repeat 2 133 0 1814 269 54 36 chr4 170771961 170772905 -13515757 - Charlie2 DNA MER1_type -118 2744 1784 367 298 0 0 chr4 170772955 170773079 -13515583 + L1MD2 LINE L1 5225 5348 -798 38 51 0 0 chr4 170773110 170773169 -13515493 + AT_rich Low_complexity Low_complexity 1 59 0 2451 244 48 50 chr4 170773237 170774126 -13514536 + L1MD2 LINE L1 5372 6259 -100 26 64 0 0 chr4 170774186 170774233 -13514429 + AT_rich Low_complexity Low_complexity 1 47 0 243 309 40 16 chr4 170774233 170774359 -13514303 - L1MEd LINE L1 -5299 820 692 208 345 215 5 chr4 170776990 170777199 -13511463 + MIR SINE MIR 9 261 -1 2242 215 23 23 chr4 170777218 170777692 -13510970 + MER70B LTR ERVL 3 476 -102 23 33 0 0 chr4 170778045 170778075 -13510587 + AT_rich Low_complexity Low_complexity 1 30 0 31 0 0 0 chr4 170778304 170778335 -13510327 + AT_rich Low_complexity Low_complexity 1 31 0 692 335 55 45 chr4 170778432 170778650 -13510012 + L2 LINE L2 2144 2358 -956 1605 202 2 76 chr4 170778650 170779071 -13509591 - MLT1B LTR MaLR 0 390 1 692 335 55 45 chr4 170779071 170779472 -13509190 + L2 LINE L2 2358 2769 -545 246 81 0 0 chr4 170779535 170779572 -13509090 + (TC)n Simple_repeat Simple_repeat 2 38 0 218 296 0 141 chr4 170779755 170779890 -13508772 + L2 LINE L2 3137 3252 -20 34 65 0 0 chr4 170780494 170780556 -13508106 + AT_rich Low_complexity Low_complexity 1 62 0 787 66 9 0 chr4 170781453 170781559 -13507103 - L1PA8 LINE L1 -4 6168 6062 1142 62 0 0 chr4 170781559 170781704 -13506958 + L1P3 LINE L1 5594 5738 -416 417 287 70 6 chr4 170782223 170782380 -13506282 + MIR SINE MIR 68 234 -28 264 319 42 8 chr4 170782479 170782598 -13506064 + MER94 DNA DNA 1 123 -11 22 0 0 0 chr4 170782631 170782653 -13506009 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr4 170782907 170782950 -13505712 + AT_rich Low_complexity Low_complexity 1 43 0 1617 152 53 28 chr4 170783189 170783472 -13505190 + MER1B DNA MER1_type 49 338 -1 505 42 28 0 chr4 170784012 170784084 -13504578 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 232 264 0 0 chr4 170784098 170784151 -13504511 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 29 0 0 0 chr4 170784177 170784206 -13504456 + AT_rich Low_complexity Low_complexity 1 29 0 182 292 15 15 chr4 170784388 170784453 -13504209 + MIR SINE MIR 189 253 -9 260 226 10 98 chr4 170784607 170784709 -13503953 - LTR65 LTR ERV1 -238 431 339 22 94 0 0 chr4 170786548 170786612 -13502050 + AT_rich Low_complexity Low_complexity 1 64 0 707 245 102 0 chr4 170786638 170786834 -13501828 + Charlie1 DNA MER1_type 11 226 -2535 350 244 118 0 chr4 170786829 170786956 -13501706 + Charlie1 DNA MER1_type 2620 2761 0 * 652 274 61 4 chr4 170787462 170787692 -13500970 - L1ME1 LINE L1 -182 5984 5742 254 196 28 93 chr4 170787734 170787841 -13500821 - L1ME LINE L1 -255 6260 6161 23 0 0 0 chr4 170788917 170788940 -13499722 + AT_rich Low_complexity Low_complexity 1 23 0 604 301 81 14 chr4 170791552 170791848 -13496814 - L1MEd LINE L1 -5768 351 36 433 113 0 0 chr4 170792114 170792176 -13496486 + AluS SINE Alu 231 292 -19 248 272 89 65 chr4 170792179 170792348 -13496314 + MIR SINE MIR 29 201 -61 303 285 144 56 chr4 170792388 170792672 -13495990 - MLT1J2 LTR MaLR -42 408 100 183 261 46 0 chr4 170792751 170792816 -13495846 + MIR SINE MIR 195 262 0 495 306 42 74 chr4 170792816 170793169 -13495493 - L1ME LINE L1 -401 6114 5773 382 275 51 29 chr4 170793432 170793570 -13495092 - MIR SINE MIR -74 188 48 2123 253 50 7 chr4 170793641 170794226 -13494436 + MLT1E2 LTR MaLR 17 626 0 403 295 74 11 chr4 170794580 170794770 -13493892 - L1ME LINE L1 -876 5664 5463 4224 263 61 44 chr4 170794814 170796954 -13491708 - L1ME LINE L1 -1579 4961 2787 287 0 108 0 chr4 170796954 170796991 -13491671 - MLT2C2 LTR ERVL 0 464 424 986 211 62 71 chr4 170797043 170797365 -13491297 + MSTB2 LTR MaLR 15 333 -124 979 173 6 11 chr4 170797365 170797544 -13491118 + FRAM SINE Alu 1 176 0 783 132 54 0 chr4 170797553 170797682 -13490980 + MSTB2 LTR MaLR 322 457 0 1236 135 5 0 chr4 170797682 170797867 -13490795 - MLT2B1 LTR ERVL -334 186 1 3313 266 60 47 chr4 170797867 170798225 -13490437 - L1MDa LINE L1 -3749 2791 2439 2343 84 3 0 chr4 170798225 170798524 -13490138 - AluY SINE Alu -11 300 1 3313 266 60 47 chr4 170798524 170799715 -13488947 - L1MDa LINE L1 -4101 2439 1226 23 0 0 0 chr4 170799896 170799919 -13488743 + AT_rich Low_complexity Low_complexity 1 23 0 2056 147 3 0 chr4 170800069 170800381 -13488281 - AluSq SINE Alu 0 313 1 22 88 0 0 chr4 170800418 170800475 -13488187 + AT_rich Low_complexity Low_complexity 1 57 0 202 231 15 0 chr4 170800838 170800903 -13487759 + A-rich Low_complexity Low_complexity 2 67 0 1649 112 21 115 chr4 170801648 170801979 -13486683 - AluYb8 SINE Alu -18 300 1 21 71 0 0 chr4 170802147 170802189 -13486473 + AT_rich Low_complexity Low_complexity 1 42 0 1096 214 72 19 chr4 170802269 170802693 -13485969 + MLT1D LTR MaLR 1 486 -19 3468 144 25 107 chr4 170802694 170803469 -13485193 + MER50 LTR ERV1 1 711 -23 210 71 0 0 chr4 170804189 170804217 -13484445 + (TC)n Simple_repeat Simple_repeat 2 29 0 958 262 74 0 chr4 170804226 170804374 -13484288 - AluJo SINE Alu -30 282 108 240 35 0 0 chr4 170804374 170804403 -13484259 + (TG)n Simple_repeat Simple_repeat 2 30 0 958 262 74 0 chr4 170804403 170804498 -13484164 - AluJo SINE Alu -204 108 21 225 94 0 0 chr4 170805746 170805778 -13482884 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 2023 116 32 0 chr4 170805988 170806272 -13482390 + AluSx SINE Alu 1 293 -19 207 274 0 32 chr4 170806530 170806592 -13482070 + MIR SINE MIR 20 79 -129 1662 150 88 21 chr4 170806844 170807183 -13481479 - THE1C LTR MaLR 0 375 14 23 0 0 0 chr4 170807197 170807220 -13481442 + AT_rich Low_complexity Low_complexity 1 23 0 978 293 95 41 chr4 170807992 170808477 -13480185 + MLT1H LTR MaLR 39 549 0 258 229 48 36 chr4 170808481 170808564 -13480098 + MLT1H-int LTR MaLR 5 88 -1283 1865 117 11 0 chr4 170809173 170809439 -13479223 - THE1B LTR MaLR 0 364 96 1018 116 13 0 chr4 170809539 170809694 -13478968 - L1MA1 LINE L1 -345 7376 7220 9172 168 27 15 chr4 170809695 170811989 -13476673 - L1MA1 LINE L1 -553 7170 4845 1312 239 46 17 chr4 170811989 170812336 -13476326 - L1MA1 LINE L1 -7192 373 17 504 249 66 20 chr4 170812341 170812538 -13476124 + MER34 LTR ERV1 337 542 0 22 0 0 0 chr4 170812630 170812652 -13476010 + AT_rich Low_complexity Low_complexity 1 22 0 2381 240 61 48 chr4 170812959 170813365 -13475297 - L1MC4 LINE L1 -17 8025 7626 1709 188 95 33 chr4 170813365 170813795 -13474867 + MSTB2 LTR MaLR 1 457 0 2381 240 61 48 chr4 170813795 170814350 -13474312 - L1MC4 LINE L1 -416 7626 7051 227 338 14 0 chr4 170814364 170814438 -13474224 - L1MC4 LINE L1 -1063 6979 6905 1637 219 31 8 chr4 170814438 170814795 -13473867 + MLT1A1 LTR MaLR 1 365 0 3394 215 48 21 chr4 170814797 170815564 -13473098 + MLT1A1-int LTR MaLR 2 789 -946 303 309 44 8 chr4 170815675 170815887 -13472775 - L1M4 LINE L1 -2310 3836 3618 1943 153 134 8 chr4 170816647 170817027 -13471635 - MSTA LTR MaLR 0 428 1 24 32 0 0 chr4 170817028 170817059 -13471603 + AT_rich Low_complexity Low_complexity 1 31 0 35 41 0 0 chr4 170818093 170818142 -13470520 + AT_rich Low_complexity Low_complexity 1 49 0 1921 153 7 7 chr4 170818206 170818501 -13470161 - AluSx SINE Alu -17 295 1 901 319 101 34 chr4 170818583 170819205 -13469457 - L2 LINE L2 -18 3295 2638 1153 160 5 56 chr4 170820555 170820768 -13467894 + AluJb SINE Alu 81 282 -30 27 0 0 0 chr4 170821401 170821428 -13467234 + AT_rich Low_complexity Low_complexity 1 27 0 1796 158 36 0 chr4 170822485 170822763 -13465899 - AluSx SINE Alu -22 290 3 5468 180 158 32 chr4 170822805 170824196 -13464466 - MER52A LTR ERV1 0 1755 217 892 189 53 10 chr4 170824220 170824426 -13464236 - Tigger1 DNA MER2_type -16 2402 2188 * 1381 185 36 11 chr4 170824424 170824700 -13463962 - Tigger1 DNA MER2_type -2132 286 4 2652 215 49 41 chr4 170824705 170824952 -13463710 - L1MB3 LINE L1 -53 6130 5887 2166 171 50 21 chr4 170824952 170825374 -13463288 - Tigger2a DNA MER2_type 0 434 1 2652 215 49 41 chr4 170825374 170825834 -13462828 - L1MB3 LINE L1 -296 5887 5417 448 139 0 14 chr4 170825935 170826007 -13462655 - AluSp/q SINE Alu -63 250 180 578 215 42 42 chr4 170826013 170826157 -13462505 - MLT1A1 LTR MaLR -218 147 4 1580 206 51 9 chr4 170826321 170826618 -13462044 + MLT1A1 LTR MaLR 1 317 -48 243 0 0 0 chr4 170826618 170826645 -13462017 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1580 206 51 9 chr4 170826645 170826697 -13461965 + MLT1A1 LTR MaLR 317 365 0 345 326 61 31 chr4 170826884 170827489 -13461173 + L1M4 LINE L1 2517 3139 -3007 4360 183 38 9 chr4 170827753 170828626 -13460036 - L1MC1 LINE L1 0 6333 5436 749 168 0 40 chr4 170828664 170828813 -13459849 - FLAM_C SINE Alu 0 143 1 570 185 0 0 chr4 170828815 170828923 -13459739 - L1MC1 LINE L1 -893 5440 5333 2281 87 7 3 chr4 170828959 170829258 -13459404 + AluSx SINE Alu 1 300 -12 5242 111 4 19 chr4 170829265 170830076 -13458586 - L1PA15 LINE L1 -3 6162 5364 456 184 44 0 chr4 170830066 170830180 -13458482 - L1MC1 LINE L1 -835 5311 5193 * 648 204 0 0 chr4 170830227 170830330 -13458332 - 5S rRNA rRNA -18 103 1 27 0 0 0 chr4 170831724 170831751 -13456911 + AT_rich Low_complexity Low_complexity 1 27 0 1487 180 0 16 chr4 170832239 170832495 -13456167 + AluJo SINE Alu 3 254 -58 314 130 0 0 chr4 170832709 170832755 -13455907 + Alu SINE Alu 2 47 -255 983 145 0 0 chr4 170832755 170832900 -13455762 + AluSp/q SINE Alu 155 299 -14 1542 249 109 8 chr4 170833091 170833764 -13454898 + L1ME1 LINE L1 5330 6091 -73 183 250 25 0 chr4 170834020 170834060 -13454602 + MER5A DNA MER1_type 8 48 -141 250 43 0 65 chr4 170835136 170835182 -13453480 + (TTTC)n Simple_repeat Simple_repeat 3 45 0 194 241 111 46 chr4 170835299 170835407 -13453255 + MIR3 SINE MIR 82 196 -12 1710 180 45 64 chr4 170835419 170835891 -13452771 - MLT1C LTR MaLR -4 463 1 233 250 0 15 chr4 170837726 170837794 -13450868 + (TA)n Simple_repeat Simple_repeat 2 68 0 23 0 0 0 chr4 170838624 170838647 -13450015 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr4 170838711 170838741 -13449921 + AT_rich Low_complexity Low_complexity 1 30 0 360 157 9 130 chr4 170839708 170839816 -13448846 - MLT2C1 LTR ERVL -40 357 263 307 238 12 12 chr4 170839924 170840008 -13448654 - MLT2C1 LTR ERVL -313 84 1 2006 189 97 75 chr4 170840672 170841312 -13447350 - MLT1E1 LTR MaLR 0 654 1 428 91 15 0 chr4 170841615 170841681 -13446981 + (TA)n Simple_repeat Simple_repeat 1 67 0 1556 92 13 13 chr4 170841895 170842133 -13446529 + L1PA7 LINE L1 4445 4682 -1464 6687 64 12 7 chr4 170842233 170843321 -13445341 + L1PA7 LINE L1 5058 6150 -4 29 0 0 0 chr4 170843347 170843376 -13445286 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr4 170844230 170844259 -13444403 + AT_rich Low_complexity Low_complexity 1 29 0 4220 85 20 1 chr4 170844663 170845708 -13442954 - L1P3 LINE L1 -376 5796 4737 2354 204 50 8 chr4 170848564 170849059 -13439603 - MER34 LTR ERV1 0 542 27 313 113 0 32 chr4 170849069 170849131 -13439531 - L1MA5 LINE L1 0 6300 6241 1427 205 17 14 chr4 170849175 170849521 -13439141 - L1PB4 LINE L1 -3 6153 5807 768 196 32 0 chr4 170849527 170849685 -13438977 - L1MA6 LINE L1 -44 6256 6094 21 0 0 0 chr4 170851165 170851186 -13437476 + AT_rich Low_complexity Low_complexity 1 21 0 1642 149 0 30 chr4 170851416 170851684 -13436978 + AluSx SINE Alu 34 293 -19 199 307 72 60 chr4 170851770 170851936 -13436726 - L2 LINE L2 -32 3281 3114 22 35 0 0 chr4 170852332 170852361 -13436301 + AT_rich Low_complexity Low_complexity 1 29 0 357 282 118 63 chr4 170852367 170852622 -13436040 + L1ME4a LINE L1 5835 6103 -18 26 0 0 0 chr4 170852729 170852755 -13435907 + AT_rich Low_complexity Low_complexity 1 26 0 261 289 39 61 chr4 170853741 170853921 -13434741 + L2 LINE L2 2551 2726 -588 1649 204 96 21 chr4 170854004 170854430 -13434232 + LOR1b LTR ERV1 1 458 -3 775 259 54 9 chr4 170855483 170855930 -13432732 - MER34 LTR ERV1 -1 541 12 905 184 41 0 chr4 170856499 170856717 -13431945 - L1MA7 LINE L1 -1 6290 6064 189 269 60 15 chr4 170857674 170857741 -13430921 - L2 LINE L2 0 3313 3244 369 0 0 0 chr4 170858371 170858412 -13430250 + (TA)n Simple_repeat Simple_repeat 2 42 0 1553 227 33 43 chr4 170858588 170858980 -13429682 - MER61D LTR ERV1 0 501 114 2551 142 20 20 chr4 170859021 170859827 -13428835 - MER61D-int LTR ERV1 0 5217 4370 12944 113 25 13 chr4 170859855 170861886 -13426776 - MER61D-int LTR ERV1 -1180 4037 1983 2919 182 106 77 chr4 170861876 170863145 -13425517 - MER61D-int LTR ERV1 -3576 2010 407 * 923 216 12 85 chr4 170863124 170863187 -13425475 - MER61D-int LTR ERV1 -4740 477 411 * 192 40 0 0 chr4 170863187 170863212 -13425450 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 923 216 12 85 chr4 170863212 170863467 -13425195 - MER61D-int LTR ERV1 -4806 411 182 614 149 18 35 chr4 170863599 170863713 -13424949 - MER61D-int LTR ERV1 -5087 130 19 2052 172 42 16 chr4 170863730 170864108 -13424554 - MER61D LTR ERV1 0 501 114 224 224 0 17 chr4 170864179 170864237 -13424425 + CT-rich Low_complexity Low_complexity 2 58 0 2193 125 48 26 chr4 170864902 170865253 -13423409 + THE1B LTR MaLR 6 364 0 10822 122 7 0 chr4 170865253 170866822 -13421840 + THE1B-int LTR MaLR 1 1580 0 2052 130 54 25 chr4 170866822 170867176 -13421486 + THE1B LTR MaLR 1 364 0 367 371 49 10 chr4 170867176 170867381 -13421281 + MLT1K LTR MaLR 218 430 -158 2064 114 0 0 chr4 170867695 170868012 -13420650 + AluSg SINE Alu 1 317 0 272 321 50 37 chr4 170869476 170869694 -13418968 + L1MCa LINE L1 108 328 -6068 1827 185 120 34 chr4 170869694 170869847 -13418815 - MER34 LTR ERV1 0 542 404 1558 202 10 13 chr4 170869847 170870154 -13418508 + AluJo SINE Alu 1 306 -6 1827 185 120 34 chr4 170870154 170870475 -13418187 - MER34 LTR ERV1 -138 404 27 619 279 54 74 chr4 170870486 170871024 -13417638 + L1MCa LINE L1 327 853 -5543 250 308 0 22 chr4 170871092 170871183 -13417479 - L1MC4 LINE L1 -1339 6703 6615 186 333 0 0 chr4 170871192 170871285 -13417377 + (CATATA)n Simple_repeat Simple_repeat 4 96 0 268 327 62 5 chr4 170871302 170871510 -13417152 + L1MCa LINE L1 1003 1222 -4983 23 33 0 0 chr4 170871586 170871616 -13417046 + AT_rich Low_complexity Low_complexity 1 30 0 333 313 46 38 chr4 170871646 170871912 -13416750 + L1MCa LINE L1 1246 1610 -966 468 289 90 10 chr4 170871957 170872258 -13416404 + L1MCa LINE L1 1727 2051 -4345 3947 140 46 8 chr4 170872261 170873027 -13415635 - L1PA16 LINE L1 -1 6165 5239 1197 275 55 25 chr4 170873026 170873722 -13414940 + L1MCa LINE L1 2039 2714 -3501 * 1309 138 0 65 chr4 170873722 170873997 -13414665 - L1MA10 LINE L1 -3 6331 6075 939 280 122 16 chr4 170874025 170874671 -13413991 + L1MCa LINE L1 3291 4005 -2210 22 0 0 0 chr4 170875351 170875373 -13413289 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr4 170877149 170877180 -13411482 + AT_rich Low_complexity Low_complexity 1 31 0 35 63 0 0 chr4 170877808 170877871 -13410791 + AT_rich Low_complexity Low_complexity 1 63 0 13153 158 18 29 chr4 170879265 170881709 -13406953 + Tigger1 DNA MER2_type 1 2418 0 678 238 96 28 chr4 170881786 170882068 -13406594 + L1MC5 LINE L1 6864 7164 -797 2948 82 0 5 chr4 170882070 170882461 -13406201 + MLT2A1 LTR ERVL 1 389 -55 447 81 35 0 chr4 170882461 170882547 -13406115 + (TA)n Simple_repeat Simple_repeat 1 89 0 1115 220 69 82 chr4 170882556 170882922 -13405740 + L1MC5 LINE L1 7169 7523 -438 380 242 55 16 chr4 170882922 170883050 -13405612 + MER94 DNA DNA 2 134 0 1115 220 69 82 chr4 170883050 170883364 -13405298 + L1MC5 LINE L1 7523 7840 -121 21 57 0 0 chr4 170933399 170933434 -13355228 + AT_rich Low_complexity Low_complexity 1 35 0 2460 65 13 3 chr4 170933508 170933816 -13354846 + AluY SINE Alu 1 311 0 22 0 0 0 chr4 170933859 170933881 -13354781 + AT_rich Low_complexity Low_complexity 1 22 0 1872 159 28 0 chr4 170933977 170934266 -13354396 - AluJb SINE Alu -10 302 6 22 88 0 0 chr4 170934273 170934330 -13354332 + AT_rich Low_complexity Low_complexity 1 57 0 22 0 0 0 chr4 170934999 170935021 -13353641 + AT_rich Low_complexity Low_complexity 1 22 0 1083 215 65 169 chr4 170935288 170935874 -13352788 + L1ME3A LINE L1 5428 5904 -266 2571 65 0 0 chr4 170935874 170936183 -13352479 - AluY SINE Alu -2 309 1 1083 215 65 169 chr4 170936183 170936425 -13352237 + L1ME3A LINE L1 5904 6170 0 346 303 97 24 chr4 170936927 170938238 -13350424 - L1M4 LINE L1 -874 5272 3798 4332 134 43 12 chr4 170938399 170938587 -13350075 + L1PA13 LINE L1 4552 4733 -1430 496 95 68 0 chr4 170938587 170938661 -13350001 - MADE1 DNA Mariner -1 79 1 4332 134 43 12 chr4 170938661 170939562 -13349100 + L1PA13 LINE L1 4733 5605 -558 2489 78 0 0 chr4 170939562 170939870 -13348792 - AluY SINE Alu -3 308 1 4332 134 43 12 chr4 170939870 170939996 -13348666 + L1PA13 LINE L1 5605 5726 -437 486 0 0 0 chr4 170939996 170940050 -13348612 + (CA)n Simple_repeat Simple_repeat 2 55 0 4332 134 43 12 chr4 170940050 170940142 -13348520 + L1PA13 LINE L1 5726 5884 -279 7345 176 60 76 chr4 170940142 170941882 -13346780 - MER52A LTR ERV1 0 1755 68 270 216 0 0 chr4 170942222 170942292 -13346370 - MER52A LTR ERV1 -1225 62 1 1477 126 40 5 chr4 170942311 170942533 -13346129 + L1PA13 LINE L1 5922 6151 -12 25 31 0 0 chr4 170942539 170942571 -13346091 + AT_rich Low_complexity Low_complexity 1 32 0 * 287 305 31 55 chr4 170942552 170943099 -13345563 - L1M4 LINE L1 -2634 3512 2979 4644 158 11 9 chr4 170943100 170944529 -13344133 - L1PA15 LINE L1 -189 5976 4546 4676 129 20 22 chr4 170944743 170945589 -13343073 - HERVH LTR ERV1 -6869 844 1 2689 87 92 5 chr4 170945591 170946003 -13342659 - LTR7 LTR ERV1 -2 448 1 3266 148 2 4 chr4 170946277 170946817 -13341845 - L1PB3 LINE L1 -7 6147 5609 205 382 40 13 chr4 170947841 170947993 -13340669 - MIR SINE MIR -102 160 5 366 195 74 20 chr4 170948072 170948631 -13340031 - L1MC3 LINE L1 -6 7779 5737 1275 215 70 51 chr4 170948632 170949004 -13339658 - MSTB1 LTR MaLR 0 432 54 323 92 145 40 chr4 170949036 170949112 -13339550 - MSTB1 LTR MaLR -373 84 1 1682 202 25 0 chr4 170949112 170949468 -13339194 - L1MC3 LINE L1 -593 5740 5376 * 2554 218 49 32 chr4 170949466 170949509 -13339153 - L1MC1 LINE L1 -427 5906 5865 2055 193 30 35 chr4 170949509 170949939 -13338723 + MSTC LTR MaLR 1 428 0 2554 218 49 32 chr4 170949939 170950491 -13338171 - L1MC1 LINE L1 -468 5865 5324 1618 183 7 11 chr4 170950491 170950825 -13337837 - AluJb SINE Alu 0 333 1 2554 218 49 32 chr4 170950825 170951460 -13337202 - L1MC1 LINE L1 -1009 5324 4654 1596 294 55 23 chr4 170951456 170952269 -13336393 - L1MC1 LINE L1 -2019 4127 3289 * 1511 191 38 27 chr4 170952264 170952635 -13336027 - L1MA8 LINE L1 0 6291 5917 * 1724 211 29 12 chr4 170952801 170953209 -13335453 - L1P LINE L1 -2361 3785 3371 11667 119 15 10 chr4 170954221 170954617 -13334045 + L1PA8 LINE L1 3468 3860 -2312 6534 122 26 24 chr4 170954617 170955686 -13332976 + MER11C LTR ERVK 1 1071 0 11667 119 15 10 chr4 170955686 170958002 -13330660 + L1PA8 LINE L1 3860 6172 0 24 0 0 0 chr4 170958002 170958026 -13330636 + AT_rich Low_complexity Low_complexity 1 24 0 21 89 0 0 chr4 170958650 170958706 -13329956 + AT_rich Low_complexity Low_complexity 1 56 0 11705 217 49 43 chr4 170959379 170959776 -13328886 - L1PB1 LINE L1 -1 6866 6473 198 0 0 0 chr4 170959776 170959798 -13328864 + (TA)n Simple_repeat Simple_repeat 2 23 0 11705 217 49 43 chr4 170959798 170959848 -13328814 - L1PB1 LINE L1 -394 6473 6425 4113 67 182 0 chr4 170959848 170960430 -13328232 - LTR12 LTR ERV1 0 688 1 11705 217 49 43 chr4 170960430 170963271 -13325391 - L1PB1 LINE L1 -442 6425 3602 2078 125 3 10 chr4 170963271 170963575 -13325087 - AluSp SINE Alu -11 302 1 11705 217 49 43 chr4 170963575 170963950 -13324712 - L1PB1 LINE L1 -3265 3602 3231 2122 130 7 0 chr4 170963950 170964249 -13324413 + AluSx SINE Alu 2 302 -10 11705 217 49 43 chr4 170964249 170964596 -13324066 - L1PB1 LINE L1 -3636 3231 2887 5009 91 26 0 chr4 170964596 170965300 -13323362 + LTR30 LTR ERV1 1 722 0 11705 217 49 43 chr4 170965300 170967897 -13320765 - L1PB1 LINE L1 -3980 2887 156 1125 227 15 0 chr4 170967921 170968181 -13320481 + L1MB5 LINE L1 5903 6166 -8 33 43 0 0 chr4 170968181 170968228 -13320434 + AT_rich Low_complexity Low_complexity 1 47 0 470 288 61 23 chr4 170968228 170968437 -13320225 + MIR SINE MIR 16 262 0 298 296 62 0 chr4 170968463 170968544 -13320118 - MIR3 SINE MIR -12 196 111 184 315 0 0 chr4 170968838 170968892 -13319770 - L2 LINE L2 -9 3263 3210 24 0 0 0 chr4 170969465 170969489 -13319173 + AT_rich Low_complexity Low_complexity 1 24 0 180 111 0 0 chr4 170969505 170969532 -13319130 + (CATA)n Simple_repeat Simple_repeat 1 27 0 1258 254 42 71 chr4 170969798 170970373 -13318289 - L1MDa LINE L1 -5952 588 31 367 302 60 27 chr4 170970451 170970600 -13318062 + MIR SINE MIR 91 244 -18 348 267 75 64 chr4 170970600 170970787 -13317875 - L1MC/D LINE L1 -2365 5443 5255 234 233 33 0 chr4 170971112 170971172 -13317490 + CT-rich Low_complexity Low_complexity 3 64 0 22 35 0 0 chr4 170971559 170971588 -13317074 + AT_rich Low_complexity Low_complexity 1 29 0 840 178 58 36 chr4 170971902 170972157 -13316505 - L1MA6 LINE L1 -6 6291 6006 2020 122 19 29 chr4 170973545 170973857 -13314805 - AluSg SINE Alu 0 310 2 2274 105 0 34 chr4 170974233 170974557 -13314105 - AluSq SINE Alu 0 313 1 362 299 21 19 chr4 170974836 170974959 -13313703 + MER5B DNA MER1_type 60 172 -6 23 0 0 0 chr4 170975022 170975045 -13313617 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chr4 170975293 170975328 -13313334 + AT_rich Low_complexity Low_complexity 1 35 0 25 51 0 0 chr4 170975395 170975434 -13313228 + AT_rich Low_complexity Low_complexity 1 39 0 781 187 36 6 chr4 170975503 170975669 -13312993 - AluSg/x SINE Alu -9 303 133 206 331 91 16 chr4 170976415 170976536 -13312126 + MIR3 SINE MIR 53 182 -26 2691 73 97 7 chr4 170978249 170978660 -13310002 - LTR7 LTR ERV1 -2 448 1 2337 106 48 13 chr4 170978660 170979039 -13309623 - HERVH LTR ERV1 0 7713 7322 1369 139 19 0 chr4 170979037 170979253 -13309409 - HERVH LTR ERV1 -1894 5819 5600 * 8472 99 7 6 chr4 170979254 170980968 -13307694 - HERVH LTR ERV1 -1818 5273 3492 889 150 20 0 chr4 170980958 170981105 -13307557 - HERVH LTR ERV1 -4423 3290 3141 * 13798 97 22 12 chr4 170981085 170983139 -13305523 - HERVH LTR ERV1 -4718 2995 921 352 167 0 0 chr4 170983239 170983305 -13305357 - L1M2 LINE L1 -682 5609 5544 3106 187 42 37 chr4 170983310 170984042 -13304620 - L1MCa LINE L1 -5118 1308 573 317 188 0 0 chr4 170984045 170984093 -13304569 - L1MCa LINE L1 -5811 615 568 2306 197 7 7 chr4 170984096 170984502 -13304160 - L1MCa LINE L1 -5816 610 205 686 234 19 13 chr4 170984502 170984660 -13304002 - MLT1E LTR MaLR -431 162 4 983 311 56 24 chr4 170985224 170985633 -13303029 - LTR16B LTR ERVL -9 455 34 479 266 96 90 chr4 170986175 170986562 -13302100 - LTR16B LTR ERVL -75 389 1 264 230 48 32 chr4 170986589 170986715 -13301947 - L1MEd LINE L1 -3111 3018 2891 2030 120 55 0 chr4 170986728 170987019 -13301643 - AluSq SINE Alu -1 312 6 370 348 109 24 chr4 170987060 170987528 -13301134 - L1MEd LINE L1 -3292 2837 2330 27 0 0 0 chr4 170987583 170987610 -13301052 + AT_rich Low_complexity Low_complexity 1 27 0 327 300 42 89 chr4 170987773 170988460 -13300202 - L1MEd LINE L1 -4862 1257 603 356 356 109 5 chr4 170988775 170988977 -13299685 + MIR SINE MIR 37 259 -3 269 321 131 0 chr4 170989539 170989623 -13299039 + L2 LINE L2 3134 3228 -44 1063 347 130 31 chr4 170989954 170990970 -13297692 + L2 LINE L2 583 1698 -1616 1023 297 183 45 chr4 170991784 170992490 -13296172 - L2 LINE L2 -1 3312 2704 2637 35 0 3 chr4 170992490 170992802 -13295860 + AluY SINE Alu 1 311 0 1023 297 183 45 chr4 170992802 170993045 -13295617 - L2 LINE L2 -609 2704 1058 208 332 119 30 chr4 170993079 170993281 -13295381 + L2 LINE L2 2067 2286 -1028 1358 314 77 12 chr4 170993507 170994179 -13294483 + L2 LINE L2 119 834 -2480 621 187 0 37 chr4 170994213 170994400 -13294262 + (TA)n Simple_repeat Simple_repeat 1 180 0 336 236 0 0 chr4 170994420 170994509 -13294153 + (TA)n Simple_repeat Simple_repeat 2 90 0 1525 167 4 4 chr4 170994510 170994756 -13293906 - AluSx SINE Alu -37 275 30 933 197 43 65 chr4 170994762 170995041 -13293621 - L1MC3 LINE L1 -12 7773 7501 276 325 41 66 chr4 170995042 170995285 -13293377 + L2 LINE L2 858 1094 -2220 1470 321 95 60 chr4 170995289 170995822 -13292840 + L2 LINE L2 1835 2348 -965 321 89 0 0 chr4 170995822 170995867 -13292795 + (CATA)n Simple_repeat Simple_repeat 2 46 0 1470 321 95 60 chr4 170995867 170996460 -13292202 + L2 LINE L2 2348 2999 -314 252 333 0 70 chr4 170996631 170996760 -13291902 - MLT1-int LTR MaLR -239 1132 1013 234 235 0 0 chr4 170997136 170997187 -13291475 + CT-rich Low_complexity Low_complexity 2 52 0 2234 116 62 0 chr4 170998094 170998447 -13290215 + THE1C LTR MaLR 1 375 0 218 386 38 41 chr4 170998860 170999179 -13289483 + L2 LINE L2 2307 2624 -690 229 286 163 7 chr4 170999240 170999387 -13289275 - L1M4c LINE L1 -4874 1689 1520 274 314 25 29 chr4 170999429 170999698 -13288964 - L1M4c LINE L1 -5009 1375 1250 23 0 0 0 chr4 171000030 171000053 -13288609 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr4 171000314 171000343 -13288319 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 171000788 171000810 -13287852 + AT_rich Low_complexity Low_complexity 1 22 0 183 80 0 0 chr4 171000857 171000882 -13287780 + (A)n Simple_repeat Simple_repeat 1 25 0 39 84 0 0 chr4 171001662 171001757 -13286905 + AT_rich Low_complexity Low_complexity 1 95 0 1388 165 23 30 chr4 171001764 171002030 -13286632 - AluJo SINE Alu -26 286 23 27 0 0 0 chr4 171002032 171002059 -13286603 + AT_rich Low_complexity Low_complexity 1 27 0 5702 235 73 21 chr4 171002648 171004568 -13284094 - L1MB8 LINE L1 0 6178 4070 342 0 0 0 chr4 171004568 171004606 -13284056 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 5702 235 73 21 chr4 171004606 171005380 -13283282 - L1MB8 LINE L1 -2108 4070 3338 530 299 88 66 chr4 171005451 171005918 -13282744 + L1ME3A LINE L1 4228 4712 -1434 1889 99 67 3 chr4 171005918 171006202 -13282460 + AluSx SINE Alu 1 302 -10 530 299 88 66 chr4 171006202 171006337 -13282325 + L1ME3A LINE L1 4712 4843 -1303 23 0 0 0 chr4 171006375 171006398 -13282264 + AT_rich Low_complexity Low_complexity 1 23 0 437 325 113 65 chr4 171006615 171007215 -13281447 + L1ME3A LINE L1 5272 5900 -270 22 94 0 0 chr4 171008040 171008104 -13280558 + AT_rich Low_complexity Low_complexity 1 64 0 23 0 0 0 chr4 171008878 171008901 -13279761 + AT_rich Low_complexity Low_complexity 1 23 0 207 139 0 0 chr4 171009361 171009397 -13279265 + (CA)n Simple_repeat Simple_repeat 1 36 0 1068 172 0 6 chr4 171011256 171011425 -13277237 - AluSg/x SINE Alu -18 294 127 7407 36 8 4 chr4 171011425 171012436 -13276226 - L1PA4 LINE L1 0 6155 5142 373 188 122 11 chr4 171012636 171012817 -13275845 - L1MC/D LINE L1 -862 5471 5271 * 968 220 20 4 chr4 171012810 171013065 -13275597 - L1 LINE L1 -2649 3497 3239 522 193 0 26 chr4 171013071 171013185 -13275477 - LTR18B LTR ERVL 0 614 504 721 244 75 25 chr4 171013187 171013388 -13275274 - LTR18A LTR ERVL -146 211 1 36786 147 11 6 chr4 171013389 171019337 -13269325 - HERVL18 LTR ERVL 0 6047 2 1205 222 103 18 chr4 171019344 171019673 -13268989 - LTR18A LTR ERVL 0 357 1 189 0 0 0 chr4 171019677 171019698 -13268964 + (T)n Simple_repeat Simple_repeat 1 21 0 1935 163 21 14 chr4 171019732 171020142 -13268520 + L1PA16 LINE L1 5710 6156 -10 37 23 0 0 chr4 171020395 171020439 -13268223 + AT_rich Low_complexity Low_complexity 1 44 0 2247 248 86 13 chr4 171020439 171021220 -13267442 - L1MC/D LINE L1 -865 5281 4444 609 0 37 0 chr4 171021230 171021311 -13267351 + (TAGA)n Simple_repeat Simple_repeat 4 87 0 303 247 106 0 chr4 171021711 171021796 -13266866 + L2 LINE L2 1759 1852 -1462 1051 304 124 44 chr4 171021796 171022949 -13265713 + L2 LINE L2 2032 3305 -8 24 32 0 0 chr4 171023223 171023254 -13265408 + AT_rich Low_complexity Low_complexity 1 31 0 328 307 119 55 chr4 171023293 171023819 -13264843 + L1ME3A LINE L1 3097 3659 -2487 402 298 32 26 chr4 171024114 171024459 -13264203 + L1ME3A LINE L1 5680 6059 -111 23 0 0 0 chr4 171024471 171024494 -13264168 + AT_rich Low_complexity Low_complexity 1 23 0 784 304 5 5 chr4 171024854 171025074 -13263588 + MIR SINE MIR 18 237 -25 2183 304 83 99 chr4 171025107 171025251 -13263411 + L2 LINE L2 1040 1185 -2128 252 0 0 0 chr4 171025251 171025279 -13263383 + (CA)n Simple_repeat Simple_repeat 1 28 0 2183 304 83 99 chr4 171025279 171026485 -13262177 + L2 LINE L2 1185 2409 -904 752 192 0 0 chr4 171026485 171026615 -13262047 - FRAM SINE Alu -22 154 25 2183 304 83 99 chr4 171026615 171026651 -13262011 + L2 LINE L2 2409 2444 -869 2242 78 0 23 chr4 171026651 171026958 -13261704 + AluY SINE Alu 11 310 -1 2183 304 83 99 chr4 171026958 171027630 -13261032 + L2 LINE L2 2444 3211 -102 259 351 37 15 chr4 171027829 171027963 -13260699 - LTR33 LTR ERVL -305 216 80 249 146 0 0 chr4 171028224 171028265 -13260397 - MLT1D LTR MaLR 0 505 465 617 366 45 3 chr4 171028279 171028571 -13260091 + LTR16C LTR ERVL 188 491 0 225 0 0 0 chr4 171028714 171028739 -13259923 + (TG)n Simple_repeat Simple_repeat 1 25 0 189 0 0 0 chr4 171028738 171028759 -13259903 + (GA)n Simple_repeat Simple_repeat 1 21 0 * 23 33 0 0 chr4 171031108 171031138 -13257524 + AT_rich Low_complexity Low_complexity 1 30 0 506 325 135 13 chr4 171031277 171031514 -13257148 + LTR16A1 LTR ERVL 190 455 -2 294 234 65 9 chr4 171031710 171031817 -13256845 - L1MC3 LINE L1 0 7785 7673 2876 234 57 63 chr4 171031820 171034312 -13254350 - L1MCb LINE L1 -3798 2766 217 3807 29 0 0 chr4 171034312 171034761 -13253901 - L1PA4 LINE L1 -14 6141 5693 2876 234 57 63 chr4 171034761 171034974 -13253688 - L1MCb LINE L1 -6347 217 4 1718 186 20 14 chr4 171035726 171036081 -13252581 - MER46B DNA MER2_type 0 236 5 301 239 91 0 chr4 171036272 171036360 -13252302 + L1MC4 LINE L1 6608 6703 -1339 * 357 244 47 0 chr4 171036284 171036370 -13252292 - L1MC4 LINE L1 -1339 6703 6614 5029 28 7 0 chr4 171036696 171037302 -13251360 - L1P LINE L1 -1338 4808 4199 753 117 0 9 chr4 171037302 171037413 -13251249 - AluSg SINE Alu -199 111 2 1132 180 98 61 chr4 171038036 171038331 -13250331 + MER2 DNA MER2_type 39 344 -1 280 382 30 0 chr4 171038396 171038527 -13250135 + MIR SINE MIR 60 194 -68 223 294 64 28 chr4 171038683 171038792 -13249870 + MIR SINE MIR 65 177 -85 1419 231 63 20 chr4 171039321 171039671 -13248991 - MLT1A1 LTR MaLR 0 365 1 24 0 0 0 chr4 171040160 171040184 -13248478 + AT_rich Low_complexity Low_complexity 1 24 0 307 265 8 0 chr4 171040221 171040338 -13248324 - Charlie2 DNA MER1_type -95 2767 2650 1925 107 8 0 chr4 171040391 171040654 -13248008 + AluSx SINE Alu 1 265 -47 726 230 36 20 chr4 171040688 171040884 -13247778 - Charlie2 DNA MER1_type -828 2034 1836 657 261 20 20 chr4 171040957 171041156 -13247506 + MER82 DNA MER2_type 6 204 -449 2232 219 11 15 chr4 171041691 171042148 -13246514 + MER82 DNA MER2_type 198 652 -1 817 292 0 0 chr4 171042300 171042502 -13246160 - L1ME LINE L1 -538 6421 6220 315 267 68 27 chr4 171042510 171042656 -13246006 - L1ME LINE L1 -1249 5692 5541 793 279 122 21 chr4 171043220 171043826 -13244836 - L1ME LINE L1 -1406 5535 4869 1026 232 53 156 chr4 171043880 171044819 -13243843 - L1ME LINE L1 -2980 3961 3113 452 241 18 0 chr4 171044816 171044928 -13243734 - L1ME LINE L1 -433 6544 6431 * 1790 164 94 3 chr4 171044928 171045258 -13243404 + THE1B LTR MaLR 5 364 0 7909 123 138 40 chr4 171045259 171046698 -13241964 + THE1B-int LTR MaLR 2 1580 0 2459 124 3 6 chr4 171046698 171047062 -13241600 + THE1B LTR MaLR 1 363 -1 570 238 93 90 chr4 171047074 171047908 -13240754 - L1ME LINE L1 -553 6422 5599 516 297 137 40 chr4 171048088 171049111 -13239551 - L1ME LINE L1 -4443 2695 1574 * 648 269 96 68 chr4 171049096 171049672 -13238990 - L1ME LINE L1 -4778 2163 1572 1137 233 52 106 chr4 171049683 171050238 -13238424 - L1ME LINE L1 -5108 1315 804 1818 144 7 17 chr4 171050238 171050563 -13238099 - AluSx SINE Alu 0 312 1 1137 233 52 106 chr4 171050563 171050703 -13237959 - L1ME LINE L1 -5619 804 658 230 243 52 66 chr4 171050861 171050997 -13237665 - L1ME LINE L1 -5301 1558 1425 3352 141 7 19 chr4 171051107 171051681 -13236981 + L1PB3 LINE L1 5576 6142 -12 681 313 38 28 chr4 171051700 171052096 -13236566 - L1ME LINE L1 -6006 433 34 349 338 46 28 chr4 171052390 171052606 -13236056 - L1M3c LINE L1 -4553 1588 1369 29 28 0 0 chr4 171054909 171054945 -13233717 + AT_rich Low_complexity Low_complexity 1 36 0 1062 281 80 55 chr4 171055365 171055891 -13232771 + MER97b DNA MER1_type? 26 564 -489 1013 287 71 20 chr4 171055961 171056456 -13232206 + L1MC4 LINE L1 6947 7466 -576 30 0 0 0 chr4 171056775 171056805 -13231857 + AT_rich Low_complexity Low_complexity 1 30 0 246 382 0 0 chr4 171057194 171057304 -13231358 + (CATATA)n Simple_repeat Simple_repeat 4 113 0 2045 92 7 24 chr4 171058005 171058298 -13230364 - AluSc SINE Alu -21 288 1 2491 220 16 65 chr4 171058761 171059437 -13229225 + LTR8 LTR ERV1 30 672 -19 189 0 0 0 chr4 171061050 171061071 -13227591 + (T)n Simple_repeat Simple_repeat 1 21 0 1651 20 0 5 chr4 171062639 171062834 -13225828 - L1PA4 LINE L1 -8 6147 5954 353 23 0 0 chr4 171062834 171062877 -13225785 + L1PA5 LINE L1 5875 5917 -237 5809 171 19 4 chr4 171062996 171064043 -13224619 - L1MC1 LINE L1 0 6333 5271 707 181 0 27 chr4 171064037 171064186 -13224476 - L1P LINE L1 -2653 3493 3349 * 360 307 50 0 chr4 171064378 171064518 -13224144 + Charlie2 DNA MER1_type 1 147 -2715 7489 33 0 0 chr4 171064683 171065624 -13223038 - L1PA3 LINE L1 -3 6152 5219 855 283 59 48 chr4 171066113 171066674 -13221988 + Charlie2 DNA MER1_type 1875 2441 -421 183 80 0 0 chr4 171066686 171066711 -13221951 + (CATATA)n Simple_repeat Simple_repeat 6 30 0 562 231 31 15 chr4 171066713 171066843 -13221819 + Tigger1 DNA MER2_type 5 136 -2282 * 564 131 0 0 chr4 171066839 171066923 -13221739 + U1 snRNA snRNA 3 86 -79 * 687 141 0 8 chr4 171066913 171067034 -13221628 + Tigger1 DNA MER2_type 125 244 -2174 2090 146 82 76 chr4 171067037 171067537 -13221125 - LTR54 LTR ERV1 -5 505 3 404 236 34 0 chr4 171067538 171067627 -13221035 + Tigger1 DNA MER2_type 238 329 -2089 8399 120 50 10 chr4 171067636 171069006 -13219656 + Tigger1 DNA MER2_type 497 1920 -498 26 74 0 0 chr4 171069409 171069463 -13219199 + AT_rich Low_complexity Low_complexity 1 54 0 231 79 26 0 chr4 171069504 171069542 -13219120 - MADE1 DNA Mariner 0 80 42 22 0 0 0 chr4 171070473 171070495 -13218167 + AT_rich Low_complexity Low_complexity 1 22 0 306 281 106 12 chr4 171070532 171070692 -13217970 + L1MC4 LINE L1 70 244 -6298 28 29 0 0 chr4 171071923 171071958 -13216704 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr4 171072720 171072758 -13215904 + AT_rich Low_complexity Low_complexity 1 38 0 2224 53 4 7 chr4 171073919 171074227 -13214435 - AluY SINE Alu 0 307 1 361 292 53 53 chr4 171074787 171074996 -13213666 - L1MC/D LINE L1 -1985 5823 5615 21 36 0 0 chr4 171075288 171075316 -13213346 + AT_rich Low_complexity Low_complexity 1 28 0 2038 180 12 10 chr4 171075316 171075728 -13212934 - L1MA4 LINE L1 -1 6299 5887 10218 187 36 9 chr4 171075733 171078221 -13210441 + L1MA4 LINE L1 3020 5584 -719 1678 165 32 35 chr4 171078221 171078597 -13210065 + THE1C LTR MaLR 1 375 0 10218 187 36 9 chr4 171078597 171078808 -13209854 + L1MA4 LINE L1 5584 5788 -515 293 219 25 17 chr4 171078831 171078947 -13209715 + L1MC4 LINE L1 2213 7201 -1339 2876 138 25 6 chr4 171078949 171079463 -13209199 + L1MA4 LINE L1 5777 6300 0 2259 115 0 3 chr4 171080002 171080315 -13208347 + AluSx SINE Alu 1 312 0 22 0 0 0 chr4 171080468 171080490 -13208172 + AT_rich Low_complexity Low_complexity 1 22 0 1860 160 27 0 chr4 171080586 171080879 -13207783 - AluJb SINE Alu -11 301 1 22 88 0 0 chr4 171080881 171080938 -13207724 + AT_rich Low_complexity Low_complexity 1 57 0 31 26 0 0 chr4 171081640 171081678 -13206984 + AT_rich Low_complexity Low_complexity 1 38 0 501 254 149 10 chr4 171082063 171082264 -13206398 - L1ME3 LINE L1 -124 6038 5810 33 20 0 20 chr4 171082366 171082398 -13206264 + AT_rich Low_complexity Low_complexity 1 33 -17 2082 95 11 0 chr4 171082398 171082682 -13205980 - AluSc SINE Alu -22 287 1 33 20 0 20 chr4 171082682 171082700 -13205962 + AT_rich Low_complexity Low_complexity 33 50 0 2053 51 0 16 chr4 171083990 171084247 -13204415 + AluY SINE Alu 41 293 -18 1168 269 186 14 chr4 171084312 171084937 -13203725 - L1ME1 LINE L1 -5 6161 5430 1172 252 24 19 chr4 171084985 171085452 -13203210 - L1ME1 LINE L1 -207 6028 5698 21 71 0 0 chr4 171085485 171085527 -13203135 + AT_rich Low_complexity Low_complexity 1 42 0 532 309 0 6 chr4 171085554 171085722 -13202940 - L1ME1 LINE L1 -539 5696 5530 * 3223 170 11 33 chr4 171085721 171086350 -13202312 - L1MC1 LINE L1 -85 6248 5634 5564 243 56 29 chr4 171086355 171088270 -13200392 - L1MC1 LINE L1 -1460 4686 2721 264 231 174 8 chr4 171088402 171088523 -13200139 - L1ME1 LINE L1 -874 5341 5201 1367 244 68 14 chr4 171088536 171089036 -13199626 - L1ME1 LINE L1 -5174 1222 696 487 272 77 50 chr4 171089071 171089332 -13199330 - L1 LINE L1 -2808 3338 3071 288 315 123 8 chr4 171089791 171089921 -13198741 + MIR SINE MIR 68 212 -50 21 0 0 0 chr4 171089942 171089963 -13198699 + AT_rich Low_complexity Low_complexity 1 21 0 1429 126 0 40 chr4 171090543 171090766 -13197896 - AluSq SINE Alu -96 217 4 21 0 0 0 chr4 171090784 171090805 -13197857 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr4 171090999 171091035 -13197627 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr4 171091091 171091113 -13197549 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr4 171091235 171091273 -13197389 + AT_rich Low_complexity Low_complexity 1 38 0 350 290 181 0 chr4 171091398 171091536 -13197126 + MIR SINE MIR 92 254 -8 368 225 14 36 chr4 171091787 171091925 -13196737 - LTR27 LTR ERV1 -2 634 500 2354 214 40 20 chr4 171091934 171092572 -13196090 - LTR28 LTR ERV1 -50 970 119 903 178 6 18 chr4 171092607 171092776 -13195886 - LTR28 LTR ERV1 -853 167 1 180 163 0 0 chr4 171093104 171093147 -13195515 + (TA)n Simple_repeat Simple_repeat 1 43 0 279 0 0 0 chr4 171093175 171093206 -13195456 + (CA)n Simple_repeat Simple_repeat 1 31 0 22 0 0 0 chr4 171093288 171093310 -13195352 + AT_rich Low_complexity Low_complexity 1 22 0 335 385 18 6 chr4 171095876 171096045 -13192617 - MIR3 SINE MIR -22 186 16 378 286 86 6 chr4 171096409 171096668 -13191994 - LTR33A LTR ERVL -15 676 317 244 310 185 15 chr4 171096913 171097248 -13191414 - L2 LINE L2 -1201 2113 1722 306 173 111 0 chr4 171097296 171097377 -13191285 - L1ME1 LINE L1 -98 6068 5979 629 256 138 9 chr4 171097400 171097747 -13190915 + L1M4 LINE L1 2626 3017 -3129 262 374 65 0 chr4 171099502 171099641 -13189021 - L2 LINE L2 -2 3311 3164 223 218 0 36 chr4 171100410 171100465 -13188197 + (TATG)n Simple_repeat Simple_repeat 1 53 0 555 177 21 0 chr4 171100632 171100728 -13187934 - MER82 DNA MER2_type -9 644 547 630 246 24 35 chr4 171100738 171100936 -13187726 - MLT1A1 LTR MaLR 0 365 214 2372 214 31 4 chr4 171100962 171101475 -13187187 - MER82 DNA MER2_type -120 533 7 1775 93 0 8 chr4 171105285 171105521 -13183141 - AluSc SINE Alu -75 234 1 233 268 0 18 chr4 171106172 171106228 -13182434 - L2 LINE L2 -47 3266 3212 445 267 300 11 chr4 171106701 171106881 -13181781 + MIR SINE MIR 2 233 -29 235 222 111 28 chr4 171107229 171107337 -13181325 - L1ME LINE L1 -474 5647 5531 2184 50 0 7 chr4 171108024 171108305 -13180357 - L1PA4 LINE L1 -3 6152 5874 1394 217 51 22 chr4 171108488 171108843 -13179819 + MLT1B LTR MaLR 18 382 -8 181 368 88 46 chr4 171110428 171110884 -13177778 + L2 LINE L2 2338 2812 -502 37 52 0 0 chr4 171111040 171111098 -13177564 + AT_rich Low_complexity Low_complexity 1 58 0 343 300 115 8 chr4 171111495 171111625 -13177037 + MER69A DNA AcHobo 18 161 -16 445 244 23 23 chr4 171111898 171112074 -13176588 + (TA)n Simple_repeat Simple_repeat 2 177 0 195 345 63 14 chr4 171112275 171112417 -13176245 - MIR SINE MIR -102 160 12 281 354 96 25 chr4 171112718 171112916 -13175746 + MIR SINE MIR 13 224 -38 3348 134 8 15 chr4 171114689 171115220 -13173442 + MER1A DNA MER1_type 1 527 0 23 0 0 0 chr4 171115609 171115632 -13173030 + AT_rich Low_complexity Low_complexity 1 23 0 45 55 0 0 chr4 171116721 171116794 -13171868 + AT_rich Low_complexity Low_complexity 1 73 0 24 53 0 0 chr4 171117138 171117176 -13171486 + AT_rich Low_complexity Low_complexity 1 38 0 803 226 96 63 chr4 171117432 171117671 -13170991 + AluJo SINE Alu 1 247 -65 298 0 0 0 chr4 171117877 171117911 -13170751 - tRNA-Cys-TGC tRNA tRNA -38 37 4 184 319 72 58 chr4 171117991 171118129 -13170533 - MIR3 SINE MIR -39 169 30 242 356 129 26 chr4 171118785 171119049 -13169613 + L2 LINE L2 1050 1340 -1974 678 286 165 37 chr4 171119051 171119735 -13168927 + L2 LINE L2 2563 3311 -2 202 356 149 11 chr4 171120172 171120346 -13168316 - L3 LINE CR1 -66 1511 1314 319 266 87 40 chr4 171121606 171121858 -13166804 + L1M4 LINE L1 3791 4054 -2092 323 337 18 12 chr4 171121934 171122103 -13166559 + L1M4 LINE L1 4156 4325 -1821 21 36 0 0 chr4 171122260 171122288 -13166374 + AT_rich Low_complexity Low_complexity 1 28 0 27 49 0 0 chr4 171122471 171122512 -13166150 + AT_rich Low_complexity Low_complexity 1 41 0 1022 168 26 5 chr4 171122647 171122838 -13165824 + L1PA10 LINE L1 5963 6157 -11 38 61 0 0 chr4 171123025 171123091 -13165571 + AT_rich Low_complexity Low_complexity 1 66 0 244 213 0 0 chr4 171123657 171123704 -13164958 + (CA)n Simple_repeat Simple_repeat 2 48 0 468 286 61 45 chr4 171124796 171125041 -13163621 + HAL1b LINE L1 316 564 -784 30 59 0 0 chr4 171125393 171125444 -13163218 + AT_rich Low_complexity Low_complexity 1 51 0 2459 224 28 49 chr4 171125594 171126458 -13162204 + MER73 LTR ERVL 6 644 0 21 0 0 0 chr4 171127140 171127161 -13161501 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 171128747 171128768 -13159894 + AT_rich Low_complexity Low_complexity 1 21 0 12569 195 35 36 chr4 171128838 171129556 -13159106 + L1M1 LINE L1 13 731 -6834 186 43 0 0 chr4 171129556 171129579 -13159083 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 2822 117 23 0 chr4 171129581 171130010 -13158652 - L1PA8A LINE L1 -13 6118 5680 12569 195 35 36 chr4 171130010 171131896 -13156766 + L1M1 LINE L1 732 2619 -4946 2613 82 3 19 chr4 171131896 171132274 -13156388 + L1PA6 LINE L1 5783 6154 0 12569 195 35 36 chr4 171132274 171133123 -13155539 + L1M1 LINE L1 2619 3468 -4097 615 62 0 0 chr4 171133123 171133203 -13155459 + (TA)n Simple_repeat Simple_repeat 2 81 0 12569 195 35 36 chr4 171133203 171133496 -13155166 + L1M1 LINE L1 3468 3760 -3805 2058 100 10 45 chr4 171133496 171133806 -13154856 + AluSc SINE Alu 1 299 -10 12569 195 35 36 chr4 171133806 171133858 -13154804 + L1M1 LINE L1 3760 4228 -3337 2067 145 14 11 chr4 171133889 171134255 -13154407 + L1MA3 LINE L1 5937 6303 -2 207 224 20 0 chr4 171134781 171134830 -13153832 + (CATAA)n Simple_repeat Simple_repeat 4 53 0 286 378 76 0 chr4 171134859 171135031 -13153631 + MIR SINE MIR 53 237 -25 2374 227 48 49 chr4 171135957 171136649 -13152013 + LTR8 LTR ERV1 1 691 0 24 0 0 0 chr4 171137281 171137305 -13151357 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr4 171137646 171137681 -13150981 + AT_rich Low_complexity Low_complexity 1 35 0 27 73 0 0 chr4 171139633 171139688 -13148974 + AT_rich Low_complexity Low_complexity 1 55 0 1939 134 46 22 chr4 171139827 171140193 -13148469 + THE1C LTR MaLR 1 375 0 692 190 15 0 chr4 171141089 171141226 -13147436 - L1PA16 LINE L1 -6 6160 6022 496 244 0 0 chr4 171141226 171141345 -13147317 + L1P LINE L1 5155 5273 -873 2276 70 0 51 chr4 171141348 171141660 -13147002 - AluY SINE Alu -15 296 1 207 337 110 25 chr4 171141661 171141824 -13146838 - L3 LINE CR1 -70 1507 1331 182 176 20 0 chr4 171142024 171142075 -13146587 + (CATA)n Simple_repeat Simple_repeat 1 52 0 211 346 89 0 chr4 171142358 171142459 -13146203 - MER91C DNA MER1_type -30 110 1 226 376 73 18 chr4 171142525 171142690 -13145972 + MIR SINE MIR 23 196 -66 183 333 16 0 chr4 171144321 171144384 -13144278 - MIR SINE MIR 0 262 199 863 217 136 0 chr4 171144395 171144593 -13144069 + MSTD LTR MaLR 2 226 -170 386 243 83 14 chr4 171144631 171144775 -13143887 - MIR SINE MIR -68 194 41 824 153 77 22 chr4 171144778 171144961 -13143701 - MER6 DNA MER2_type 0 865 673 3533 157 44 52 chr4 171144961 171145686 -13142976 - LTR62 LTR ERVK 0 719 1 2220 108 3 0 chr4 171147270 171147566 -13141096 + AluSx SINE Alu 1 297 -15 262 235 0 44 chr4 171150383 171150451 -13138211 - MERVL LTR ERVL -2475 3010 2946 2104 112 26 0 chr4 171150723 171151026 -13137636 + AluY SINE Alu 1 311 0 458 188 0 8 chr4 171152066 171152183 -13136479 + (TA)n Simple_repeat Simple_repeat 2 117 0 233 326 0 0 chr4 171152236 171152328 -13136334 - L1MC4 LINE L1 -1339 6703 6612 314 282 47 0 chr4 171152344 171152429 -13136233 + L1MC4 LINE L1 6615 6703 -1339 25 0 0 0 chr4 171152429 171152454 -13136208 + AT_rich Low_complexity Low_complexity 1 25 0 3926 151 34 13 chr4 171154021 171154723 -13133939 - LTR62 LTR ERVK -2 717 1 2394 189 52 4 chr4 171154723 171155242 -13133420 - MER6A DNA MER2_type -26 579 36 317 286 8 8 chr4 171155544 171155559 -13133103 - L1MA10 LINE L1 -2 6332 6318 2292 263 86 9 chr4 171155559 171156359 -13132303 - L1ME2 LINE L1 -9 6089 5228 1294 264 109 35 chr4 171156385 171157303 -13131359 - L1ME2 LINE L1 -3038 3042 2057 2183 228 9 11 chr4 171157599 171158056 -13130606 - MLT1C LTR MaLR 0 467 12 1556 308 82 23 chr4 171158065 171159092 -13129570 - L1ME2 LINE L1 -4981 1089 3 2084 72 0 0 chr4 171159106 171159385 -13129277 - L1PA5 LINE L1 0 6154 5876 282 315 36 9 chr4 171159562 171159730 -13128932 - MIR SINE MIR -38 224 8 26 50 0 0 chr4 171160152 171160192 -13128470 + AT_rich Low_complexity Low_complexity 1 40 0 1676 292 22 43 chr4 171161578 171162156 -13126506 + MLT1E LTR MaLR 1 566 -27 42311 36 21 2 chr4 171162203 171168237 -13120425 - L1PA3 LINE L1 0 6155 1 249 108 0 0 chr4 171168491 171168528 -13120134 + (TA)n Simple_repeat Simple_repeat 1 37 0 21 36 0 0 chr4 171169178 171169206 -13119456 + AT_rich Low_complexity Low_complexity 1 28 0 1564 181 19 0 chr4 171169376 171169690 -13118972 - L1MA4 LINE L1 0 6300 5981 32 0 0 0 chr4 171169690 171169722 -13118940 + AT_rich Low_complexity Low_complexity 1 32 0 526 277 135 67 chr4 171169866 171171201 -13117461 + L1ME3A LINE L1 2829 4254 -1892 212 256 13 0 chr4 171171307 171171385 -13117277 + (TAA)n Simple_repeat Simple_repeat 2 80 0 230 313 20 0 chr4 171171407 171171506 -13117156 + L1ME3A LINE L1 4620 4720 -1426 413 292 36 30 chr4 171171781 171171949 -13116713 + L1ME3A LINE L1 5045 5213 -933 * 6409 232 38 13 chr4 171171946 171174158 -13114504 + L1MC1 LINE L1 3443 5708 -625 425 52 0 0 chr4 171174172 171174230 -13114432 - L1PA16 LINE L1 -10 6156 6099 4807 144 34 5 chr4 171174232 171175185 -13113477 - L1PA16 LINE L1 -105 6061 5083 7736 231 15 29 chr4 171175427 171175694 -13112968 - L1 LINE L1 -926 5220 4951 2312 99 0 0 chr4 171175694 171175996 -13112666 - AluSg SINE Alu -8 302 1 7736 231 15 29 chr4 171175996 171177905 -13110757 - L1 LINE L1 -1195 4951 3074 1801 130 181 14 chr4 171177910 171178263 -13110399 + MSTA LTR MaLR 17 428 0 1208 268 87 7 chr4 171178263 171178678 -13109984 - L1 LINE L1 -3077 3069 2622 2925 187 31 7 chr4 171178678 171179294 -13109368 + L1MC1 LINE L1 5703 6333 0 886 298 32 11 chr4 171179882 171180258 -13108404 + L1ME3A LINE L1 5402 5785 -385 256 302 134 28 chr4 171180297 171180437 -13108225 + L1ME3A LINE L1 5959 6123 -47 180 0 0 0 chr4 171180437 171180457 -13108205 + (CA)n Simple_repeat Simple_repeat 1 20 0 256 302 134 28 chr4 171180457 171180495 -13108167 + L1ME3A LINE L1 6123 6156 -14 1140 287 148 37 chr4 171181253 171182418 -13106244 - L1MC4 LINE L1 0 8042 6748 242 289 63 42 chr4 171182437 171182579 -13106083 - L1MC4a LINE L1 -1214 6594 6450 13285 23 1 0 chr4 171182595 171184927 -13103735 - L1PA3 LINE L1 -3 6152 3820 22 0 0 0 chr4 171185052 171185074 -13103588 + AT_rich Low_complexity Low_complexity 1 22 0 312 279 34 14 chr4 171185181 171185328 -13103334 - L1 LINE L1 -3755 2391 2242 2529 123 57 9 chr4 171186249 171186628 -13102034 + MLT2A1 LTR ERVL 4 406 -38 303 28 0 0 chr4 171186628 171186664 -13101998 + (CA)n Simple_repeat Simple_repeat 1 36 0 2529 123 57 9 chr4 171186664 171186705 -13101957 + MLT2A1 LTR ERVL 406 444 0 276 102 0 0 chr4 171187038 171187087 -13101575 + (A)n Simple_repeat Simple_repeat 1 49 0 303 49 0 0 chr4 171188371 171188412 -13100250 + (TA)n Simple_repeat Simple_repeat 1 41 0 4852 159 43 30 chr4 171188415 171188864 -13099798 - L1MA8 LINE L1 -46 6245 5803 1260 190 3 126 chr4 171188864 171189206 -13099456 - AluJb SINE Alu -2 300 1 4852 159 43 30 chr4 171189206 171189990 -13098672 - L1MA8 LINE L1 -488 5803 4996 618 222 0 7 chr4 171189984 171190119 -13098543 + L1MA8 LINE L1 4846 4979 -1167 * 255 204 0 0 chr4 171190492 171190546 -13098116 + (TA)n Simple_repeat Simple_repeat 2 55 0 321 26 0 0 chr4 171191444 171191482 -13097180 + (TG)n Simple_repeat Simple_repeat 2 39 0 197 95 0 24 chr4 171191482 171191524 -13097138 + (TA)n Simple_repeat Simple_repeat 1 41 0 31 58 0 0 chr4 171191535 171191587 -13097075 + AT_rich Low_complexity Low_complexity 1 52 0 8137 211 39 15 chr4 171193385 171195342 -13093320 - L1MC3 LINE L1 -2 7783 5781 1929 144 49 44 chr4 171195345 171195735 -13092927 - L1MC3 LINE L1 -2138 5647 5256 517 244 72 44 chr4 171196335 171196515 -13092147 - L2 LINE L2 -16 3297 3113 720 155 0 0 chr4 171196520 171196649 -13092013 + L1MA3 LINE L1 6169 6297 -8 222 91 0 0 chr4 171197387 171197420 -13091242 + (TG)n Simple_repeat Simple_repeat 2 34 0 209 261 90 60 chr4 171198160 171198307 -13090355 - MIR SINE MIR -61 147 27 1155 185 27 142 chr4 171200227 171200586 -13088076 - MLT1A1 LTR MaLR -2 363 55 2157 134 7 0 chr4 171200586 171200893 -13087769 - AluSx SINE Alu -3 309 1 1155 185 27 142 chr4 171200893 171200943 -13087719 - MLT1A1 LTR MaLR -310 55 1 29 47 0 0 chr4 171201078 171201121 -13087541 + AT_rich Low_complexity Low_complexity 1 43 0 21 57 0 0 chr4 171201192 171201227 -13087435 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr4 171202333 171202355 -13086307 + AT_rich Low_complexity Low_complexity 1 22 0 286 105 0 6 chr4 171202357 171202415 -13086247 + L1PA10 LINE L1 6115 6172 -2 1787 118 11 11 chr4 171202517 171202796 -13085866 + L1PA15 LINE L1 5885 6163 -2 24 0 0 0 chr4 171203257 171203281 -13085381 + AT_rich Low_complexity Low_complexity 1 24 0 21 110 0 0 chr4 171203292 171203383 -13085279 + AT_rich Low_complexity Low_complexity 1 91 0 1063 148 18 14 chr4 171203402 171203619 -13085043 + L1MB3 LINE L1 5949 6166 -17 696 280 61 43 chr4 171203646 171203975 -13084687 - LTR16A LTR ERVL -96 354 20 237 288 12 12 chr4 171204529 171204609 -13084053 - MIR SINE MIR -63 145 66 242 311 118 17 chr4 171204666 171204785 -13083877 - MIR SINE MIR 0 262 132 813 188 0 0 chr4 171204934 171205067 -13083595 + FLAM_C SINE Alu 1 133 -10 273 322 28 21 chr4 171207482 171207625 -13081037 + MIR SINE MIR 89 232 -30 397 276 31 31 chr4 171208916 171209043 -13079619 - L2 LINE L2 0 3313 3187 2266 98 3 0 chr4 171209251 171209547 -13079115 - AluSq SINE Alu -16 297 1 2354 71 0 7 chr4 171210031 171210327 -13078335 + AluY SINE Alu 1 294 -17 22 0 0 0 chr4 171210416 171210438 -13078224 + AT_rich Low_complexity Low_complexity 1 22 0 30 59 0 0 chr4 171211177 171211228 -13077434 + AT_rich Low_complexity Low_complexity 1 51 0 330 281 95 74 chr4 171211574 171211805 -13076857 + L1MEc LINE L1 1601 1836 -4560 238 274 60 0 chr4 171212512 171212596 -13076066 - L1MC4 LINE L1 -1340 6702 6614 232 253 72 0 chr4 171212635 171212718 -13075944 - L1MC4 LINE L1 -1340 6702 6614 216 310 14 0 chr4 171212718 171212789 -13075873 + (TA)n Simple_repeat Simple_repeat 2 73 0 247 268 0 53 chr4 171212791 171212913 -13075749 - L1MC4 LINE L1 -1339 6703 6611 204 250 0 0 chr4 171212916 171212964 -13075698 + (TA)n Simple_repeat Simple_repeat 1 48 0 216 0 0 0 chr4 171214092 171214116 -13074546 + (A)n Simple_repeat Simple_repeat 1 24 0 619 247 102 5 chr4 171214585 171214769 -13073893 - MER20 DNA MER1_type 0 219 15 795 144 0 0 chr4 171215036 171215168 -13073494 + L1MA10 LINE L1 6195 6326 -8 1871 161 42 0 chr4 171216184 171216514 -13072148 - MER7A DNA MER2_type 0 346 5 24 32 0 0 chr4 171216600 171216631 -13072031 + AT_rich Low_complexity Low_complexity 1 31 0 1508 186 0 0 chr4 171216704 171216962 -13071700 + AluJb SINE Alu 1 258 -54 213 39 0 0 chr4 171216972 171216998 -13071664 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 181 297 33 55 chr4 171217013 171217104 -13071558 - MIR SINE MIR -82 126 38 1070 119 77 0 chr4 171218202 171218370 -13070292 + AluSg/x SINE Alu 131 311 -1 23 0 0 0 chr4 171218754 171218777 -13069885 + AT_rich Low_complexity Low_complexity 1 23 0 910 315 51 45 chr4 171218788 171219382 -13069280 - L2 LINE L2 -222 3091 2500 213 363 10 10 chr4 171219476 171219578 -13069084 + MER5B DNA MER1_type 1 102 -76 189 319 43 32 chr4 171219973 171220067 -13068595 - L2 LINE L2 -1890 1424 1330 238 306 0 47 chr4 171220657 171220742 -13067920 - L3 LINE CR1 -797 780 700 477 246 90 24 chr4 171220888 171221099 -13067563 + L2 LINE L2 1801 2025 -1289 204 304 126 37 chr4 171221326 171221461 -13067201 + L2 LINE L2 2144 2290 -1024 266 302 137 14 chr4 171221644 171221783 -13066879 + L2 LINE L2 2681 2836 -478 23 54 0 0 chr4 171222342 171222379 -13066283 + AT_rich Low_complexity Low_complexity 1 37 0 213 185 0 37 chr4 171224632 171224686 -13063976 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 389 301 101 45 chr4 171224875 171225231 -13063431 - Charlie8 DNA MER1_type -33 2384 2009 495 345 27 4 chr4 171225348 171225609 -13063053 - Charlie8 DNA MER1_type -609 1808 1542 6491 50 42 11 chr4 171225958 171227010 -13061652 + L1PA7 LINE L1 5075 6151 -3 544 217 107 43 chr4 171227026 171227353 -13061309 + L1M3 LINE L1 3029 3376 -2770 * 2016 192 20 9 chr4 171227337 171227756 -13060906 + L1M3 LINE L1 5378 5764 -419 571 268 34 14 chr4 171227745 171227954 -13060708 + L1 LINE L1 2196 2408 -3738 * 39 50 0 0 chr4 171228190 171228250 -13060412 + AT_rich Low_complexity Low_complexity 1 60 0 23 33 0 0 chr4 171228507 171228537 -13060125 + AT_rich Low_complexity Low_complexity 1 30 0 302 308 11 0 chr4 171229459 171229550 -13059112 + L2 LINE L2 3222 3313 0 24 32 0 0 chr4 171230004 171230035 -13058627 + AT_rich Low_complexity Low_complexity 1 31 0 1929 130 9 41 chr4 171230343 171230572 -13058090 + MER47A DNA MER2_type 20 236 -2087 2338 191 47 98 chr4 171230572 171230767 -13057895 + LTR1B LTR ERV1 3 206 -620 1981 142 3 7 chr4 171230767 171231063 -13057599 + AluSx SINE Alu 4 298 -14 2338 191 47 98 chr4 171231063 171231733 -13056929 + LTR1B LTR ERV1 206 824 -2 1929 130 9 41 chr4 171231733 171231848 -13056814 + MER47A DNA MER2_type 236 353 -13 2419 69 0 20 chr4 171232011 171232316 -13056346 - AluY SINE Alu -12 299 1 204 313 9 35 chr4 171233160 171233275 -13055387 + A-rich Low_complexity Low_complexity 2 113 0 691 268 26 57 chr4 171233460 171233688 -13054974 + MER58A DNA MER1_type 4 224 0 242 287 106 0 chr4 171233826 171233920 -13054742 - MIR SINE MIR -78 184 81 334 288 12 63 chr4 171233940 171234166 -13054496 + MER91B DNA MER1_type 10 183 -7 315 0 0 0 chr4 171234746 171234781 -13053881 + (CA)n Simple_repeat Simple_repeat 2 36 0 226 238 36 24 chr4 171234794 171234878 -13053784 + L1MC4 LINE L1 6628 6712 -1330 189 95 48 48 chr4 171235593 171235635 -13053027 - MER5A DNA MER1_type -18 171 130 222 37 0 0 chr4 171237074 171237101 -13051561 + (CA)n Simple_repeat Simple_repeat 2 28 0 243 355 187 0 chr4 171238148 171238255 -13050407 - L2 LINE L2 -2 3270 3144 25 0 0 0 chr4 171239132 171239157 -13049505 + AT_rich Low_complexity Low_complexity 1 25 0 2296 75 14 0 chr4 171239406 171239700 -13048962 - AluSp SINE Alu -15 298 1 283 297 49 27 chr4 171240290 171240475 -13048187 + L1MEc LINE L1 1629 1817 -4579 316 287 190 11 chr4 171240694 171240868 -13047794 + L1MEc LINE L1 2113 2317 -4079 328 317 19 25 chr4 171241046 171241207 -13047455 + MLT1H LTR MaLR 8 167 -382 276 270 11 22 chr4 171243040 171243129 -13045533 + MLT1H LTR MaLR 55 142 -407 581 228 105 12 chr4 171243132 171243294 -13045368 + LTR41 LTR ERVL 1 177 -596 304 317 83 38 chr4 171243959 171244199 -13044463 + LTR41 LTR ERVL 517 767 -6 228 35 0 0 chr4 171244293 171244322 -13044340 + (TG)n Simple_repeat Simple_repeat 2 30 0 342 253 115 29 chr4 171244786 171244960 -13043702 + L1ME3A LINE L1 5298 5486 -873 544 290 69 127 chr4 171244985 171245465 -13043197 - MLT1H1 LTR MaLR -2 553 102 13825 139 23 26 chr4 171245641 171246432 -13042230 - Tigger1 DNA MER2_type 0 2418 1626 4254 29 6 0 chr4 171246432 171246943 -13041719 - L1PA4 LINE L1 -2 6153 5640 13825 139 23 26 chr4 171246943 171248533 -13040129 - Tigger1 DNA MER2_type -792 1626 45 2093 111 0 3 chr4 171248533 171248821 -13039841 + AluSx SINE Alu 1 287 -25 22 35 0 0 chr4 171248821 171248850 -13039812 + AT_rich Low_complexity Low_complexity 1 29 0 294 297 92 26 chr4 171248898 171249090 -13039572 + L1ME3A LINE L1 5563 5766 -396 880 291 70 27 chr4 171249117 171249626 -13039036 + MLT1G1 LTR MaLR 39 595 0 342 319 67 35 chr4 171249745 171250030 -13038632 + MLT1G1-int LTR MaLR 285 578 -793 259 233 35 0 chr4 171250327 171250413 -13038249 + (TA)n Simple_repeat Simple_repeat 1 89 0 755 237 131 48 chr4 171250473 171250810 -13037852 + L1ME3A LINE L1 5775 6139 -31 467 257 120 17 chr4 171251364 171251539 -13037123 + MIR SINE MIR 44 236 -26 249 233 75 45 chr4 171251555 171251688 -13036974 - HAL1b LINE L1 -609 739 603 652 233 15 40 chr4 171251745 171251947 -13036715 - HAL1b LINE L1 -840 508 312 2078 106 7 0 chr4 171252579 171252862 -13035800 + AluSp SINE Alu 11 295 -18 603 135 0 0 chr4 171252989 171253085 -13035577 - AluSg/x SINE Alu -86 226 131 2420 60 0 28 chr4 171253256 171253575 -13035087 - AluY SINE Alu -1 310 1 26 0 0 0 chr4 171253855 171253881 -13034781 + AT_rich Low_complexity Low_complexity 1 26 0 2163 104 3 16 chr4 171253965 171254272 -13034390 - AluSq SINE Alu -10 303 1 23 33 0 0 chr4 171255378 171255408 -13033254 + AT_rich Low_complexity Low_complexity 1 30 0 1094 302 75 42 chr4 171255552 171256387 -13032275 - Charlie8 DNA MER1_type -1162 1255 393 595 226 23 23 chr4 171256858 171257035 -13031627 - L1M4 LINE L1 -1071 5075 4899 7403 24 5 0 chr4 171257040 171258552 -13030110 - L1PA4 LINE L1 -6 6149 4632 370 315 60 13 chr4 171258623 171258772 -13029890 - Charlie8 DNA MER1_type -2199 218 63 185 293 52 17 chr4 171258857 171258915 -13029747 - MIR SINE MIR -57 151 92 187 341 141 0 chr4 171259078 171259163 -13029499 + L3b LINE CR1 1460 1556 -27 533 301 25 31 chr4 171260375 171260571 -13028091 - L2 LINE L2 -8 3305 3111 283 200 10 20 chr4 171263128 171263228 -13025434 + GA-rich Low_complexity Low_complexity 5 103 0 381 335 24 18 chr4 171266204 171266368 -13022294 - MIR SINE MIR -35 227 63 401 290 78 36 chr4 171266405 171266598 -13022064 + MIR SINE MIR 28 228 -34 331 127 95 0 chr4 171270102 171270165 -13018497 + L1MA8 LINE L1 6186 6254 -37 1351 170 3 91 chr4 171270186 171270515 -13018147 + AluJo SINE Alu 11 310 -2 418 282 158 38 chr4 171270519 171270785 -13017877 + L1MCc LINE L1 153 450 -5973 454 276 121 37 chr4 171270950 171271247 -13017415 + L1ME3A LINE L1 5600 5921 -243 24 53 0 0 chr4 171272889 171272927 -13015735 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr4 171273269 171273295 -13015367 + AT_rich Low_complexity Low_complexity 1 26 0 2116 100 3 23 chr4 171273485 171273785 -13014877 + AluSg SINE Alu 1 294 -16 350 41 0 20 chr4 171274636 171274685 -13013977 + (TA)n Simple_repeat Simple_repeat 2 49 0 190 268 0 0 chr4 171274756 171274797 -13013865 - L2 LINE L2 -94 3219 3179 262 107 0 67 chr4 171275056 171275131 -13013531 + (TA)n Simple_repeat Simple_repeat 1 70 0 309 219 0 0 chr4 171275214 171275278 -13013384 - L1MC4 LINE L1 -1339 6703 6640 31 58 0 0 chr4 171275702 171275754 -13012908 + AT_rich Low_complexity Low_complexity 1 52 0 1552 244 34 42 chr4 171277863 171278334 -13010328 + L1MB7 LINE L1 20 486 -6056 654 234 30 47 chr4 171278328 171278563 -13010099 + L1MB7 LINE L1 1439 1669 -4873 * 605 312 43 22 chr4 171278626 171279129 -13009533 + L1MB7 LINE L1 2264 2776 -3868 236 211 0 0 chr4 171279147 171279199 -13009463 + L1MB7 LINE L1 2835 2886 -3758 2360 91 3 3 chr4 171279203 171279512 -13009150 - AluSp SINE Alu -4 309 1 5925 227 89 60 chr4 171279559 171283086 -13005576 + L1MB7 LINE L1 3003 6635 -42 504 164 66 0 chr4 171283086 171283208 -13005454 + L1MB7 LINE L1 6036 6165 -19 1186 65 13 0 chr4 171284081 171284235 -13004427 - AluY SINE Alu -2 309 154 2318 57 36 7 chr4 171284729 171285030 -13003632 - AluY SINE Alu -1 310 1 320 151 41 0 chr4 171285064 171285137 -13003525 + MSTC LTR MaLR 347 422 -6 21 0 0 0 chr4 171285808 171285829 -13002833 + AT_rich Low_complexity Low_complexity 1 21 0 2072 111 0 0 chr4 171286001 171286326 -13002336 + AluSg SINE Alu 1 325 0 210 279 15 0 chr4 171286388 171286456 -13002206 + T-rich Low_complexity Low_complexity 1 69 0 628 191 0 29 chr4 171287069 171287205 -13001457 + L1PA16 LINE L1 6034 6165 -1 977 140 0 0 chr4 171287566 171287702 -13000960 + AluSq SINE Alu 85 220 -93 578 267 15 29 chr4 171287702 171287909 -13000753 + L1MD3 LINE L1 6123 7957 -38 1316 169 60 4 chr4 171288142 171288408 -13000254 - L1MA9 LINE L1 -38 6274 5994 31 0 0 0 chr4 171288408 171288439 -13000223 + AT_rich Low_complexity Low_complexity 1 31 0 4493 211 76 3 chr4 171289972 171290936 -12997726 + ERVL LTR ERVL 4731 5764 0 590 247 14 7 chr4 171290810 171290956 -12997706 + Ricksha DNA DNA 226 372 -1674 * 239 159 0 23 chr4 171290979 171291023 -12997639 + MLT2D LTR ERVL 168 210 -204 2637 257 59 48 chr4 171291045 171292983 -12995679 + L1M3a LINE L1 2178 4128 -3437 2483 250 39 20 chr4 171292986 171294270 -12994392 + L1M4c LINE L1 1973 3280 -3102 9313 95 8 0 chr4 171294270 171295588 -12993074 - L1P LINE L1 -1551 4595 3267 4149 81 2 2 chr4 171295581 171296152 -12992510 + L1P LINE L1 4614 5184 -962 * 236 240 0 0 chr4 171396153 171396203 -12892459 - MLT1E2 LTR MaLR -525 101 52 205 265 0 0 chr4 171396494 171396543 -12892119 + L2 LINE L2 3265 3313 0 1719 199 15 3 chr4 171396769 171397110 -12891552 - MER7A DNA MER2_type 0 346 4 201 94 0 0 chr4 171398929 171398961 -12889701 + (TA)n Simple_repeat Simple_repeat 2 33 0 22 0 0 0 chr4 171400678 171400700 -12887962 + AT_rich Low_complexity Low_complexity 1 22 0 444 322 81 38 chr4 171401488 171401833 -12886829 - L1MEc LINE L1 -4170 2226 1867 2339 77 0 7 chr4 171401856 171402154 -12886508 + AluSc SINE Alu 1 296 -13 1383 181 11 23 chr4 171402171 171402431 -12886231 + Tigger7 DNA MER2_type 1 257 -293 601 174 0 0 chr4 171402440 171402538 -12886124 + Tigger7 DNA MER2_type 2490 2587 0 354 283 132 61 chr4 171402611 171403462 -12885200 - L1MEc LINE L1 -4679 1717 807 2443 81 10 0 chr4 171406707 171407016 -12881646 + AluSq SINE Alu 1 312 -1 600 172 60 8 chr4 171407734 171407868 -12880794 - FLAM_A SINE Alu -1 141 1 2472 55 0 7 chr4 171407871 171408180 -12880482 - AluY SINE Alu -4 307 1 338 330 81 21 chr4 171410149 171410385 -12878277 - HAL1 LINE L1 0 2507 2258 1705 204 36 11 chr4 171410497 171410855 -12877807 - MLT1A2 LTR MaLR 0 374 8 1047 179 46 0 chr4 171410855 171411051 -12877611 - MLT1A2-int LTR MaLR -19 1716 1512 339 333 30 0 chr4 171411052 171411151 -12877511 - MLT1A2-int LTR MaLR -332 1403 1302 37680 85 13 7 chr4 171411895 171414212 -12874450 + L1PA6 LINE L1 13 2314 -3840 378 0 0 0 chr4 171414212 171414254 -12874408 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 37680 85 13 7 chr4 171414254 171418041 -12870621 + L1PA6 LINE L1 2314 6152 -2 246 206 0 0 chr4 171418252 171418315 -12870347 + (TA)n Simple_repeat Simple_repeat 1 63 0 195 162 0 0 chr4 171418314 171418351 -12870311 + (CA)n Simple_repeat Simple_repeat 2 38 0 * 266 291 164 34 chr4 171418363 171418748 -12869914 - L1ME LINE L1 -404 5692 5258 182 37 37 0 chr4 171418749 171418776 -12869886 + (TC)n Simple_repeat Simple_repeat 1 28 0 2815 97 70 4 chr4 171418976 171419432 -12869230 + LTR19A LTR ERV1 1 486 0 345 304 52 45 chr4 171419465 171419803 -12868859 - L1ME LINE L1 -1043 5037 4699 1090 279 122 8 chr4 171419815 171420216 -12868446 + LTR40c LTR ERVL 10 456 -9 483 291 84 36 chr4 171420498 171420972 -12867690 - L1ME LINE L1 -2688 3392 2896 270 253 11 74 chr4 171420978 171421073 -12867589 - L1ME LINE L1 -4641 1620 1532 920 235 32 103 chr4 171421075 171421143 -12867519 - MLT1A1 LTR MaLR 0 365 294 2107 100 0 21 chr4 171421143 171421465 -12867197 + AluY SINE Alu 1 316 0 920 235 32 103 chr4 171421465 171421806 -12866856 - MLT1A1 LTR MaLR -71 294 15 986 289 133 46 chr4 171421847 171423068 -12865594 - L1ME LINE L1 -4622 1458 123 438 242 50 0 chr4 171423070 171423190 -12865472 - L1MC3 LINE L1 -923 6862 6737 882 267 18 29 chr4 171424003 171424284 -12864378 - MLT1C LTR MaLR 0 467 190 204 152 0 0 chr4 171424336 171424369 -12864293 - L2 LINE L2 -10 3303 3271 753 193 27 37 chr4 171424431 171424618 -12864044 - MLT1C LTR MaLR -281 186 2 2203 124 40 11 chr4 171424746 171425100 -12863562 - THE1B LTR MaLR 0 364 1 21 82 0 0 chr4 171425173 171425222 -12863440 + AT_rich Low_complexity Low_complexity 1 49 0 31 26 0 0 chr4 171426439 171426477 -12862185 + AT_rich Low_complexity Low_complexity 1 38 0 186 43 0 0 chr4 171426824 171426847 -12861815 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2010 120 3 3 chr4 171426849 171427132 -12861530 - AluSx SINE Alu -29 283 1 1231 184 83 49 chr4 171427999 171428419 -12860243 - MLT2A2 LTR ERVL -2 451 110 303 122 0 0 chr4 171428726 171428775 -12859887 + (CA)n Simple_repeat Simple_repeat 2 50 0 195 152 0 0 chr4 171429065 171429098 -12859564 - L2 LINE L2 -10 3303 3271 273 143 91 39 chr4 171429276 171429385 -12859277 + GA-rich Low_complexity Low_complexity 1 114 0 183 80 0 0 chr4 171429857 171429882 -12858780 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2272 280 120 25 chr4 171429994 171430654 -12858008 + MER69B DNA AcHobo 1 792 -1734 1743 136 87 25 chr4 171430654 171430977 -12857685 - MER61A LTR ERV1 0 343 1 2272 280 120 25 chr4 171430977 171431334 -12857328 + MER69B DNA AcHobo 792 1114 -112 2108 121 0 10 chr4 171431536 171431825 -12856837 - AluSx SINE Alu -26 286 1 721 227 37 50 chr4 171432252 171432324 -12856338 + MER6A DNA MER2_type 2 73 -532 2278 165 40 62 chr4 171432324 171432820 -12855842 - MER66B LTR ERV1 0 486 2 721 227 37 50 chr4 171432820 171432989 -12855673 + MER6A DNA MER2_type 73 240 -365 429 298 0 0 chr4 171432998 171433176 -12855486 + (TG)n Simple_repeat Simple_repeat 2 179 0 485 264 0 11 chr4 171433201 171433383 -12855279 + (TG)n Simple_repeat Simple_repeat 1 180 0 304 85 71 71 chr4 171433396 171433537 -12855125 + (TGAG)n Simple_repeat Simple_repeat 4 144 0 3231 182 34 14 chr4 171433593 171434237 -12854425 + MER6A DNA MER2_type 209 605 0 26 0 0 0 chr4 171434826 171434852 -12853810 + AT_rich Low_complexity Low_complexity 1 26 0 1644 224 13 40 chr4 171434965 171435001 -12853661 - MLT1A1 LTR MaLR 0 365 330 2415 76 0 0 chr4 171435001 171435305 -12853357 - AluY SINE Alu -7 304 1 1644 224 13 40 chr4 171435305 171435643 -12853019 - MLT1A1 LTR MaLR -35 330 1 7301 214 51 34 chr4 171435643 171437342 -12851320 - MLT1A1-int LTR MaLR 0 1735 9 1843 210 14 0 chr4 171437352 171437709 -12850953 - MLT1A1 LTR MaLR -2 363 2 269 357 10 0 chr4 171437733 171437831 -12850831 - L2 LINE L2 0 3272 3174 301 294 119 7 chr4 171438163 171438306 -12850356 - MIR SINE MIR -22 240 82 601 246 50 50 chr4 171438592 171438889 -12849773 + L1MC4 LINE L1 4487 4783 -1363 1083 211 0 127 chr4 171438907 171439253 -12849409 - MLT1A1 LTR MaLR -63 302 1 1943 246 72 27 chr4 171439385 171440158 -12848504 + L1ME2 LINE L1 5341 6148 -16 23 33 0 0 chr4 171441390 171441420 -12847242 + AT_rich Low_complexity Low_complexity 1 30 0 239 299 24 16 chr4 171441535 171441662 -12847000 + L1MC4 LINE L1 4891 5018 -1128 2363 106 3 0 chr4 171441817 171442129 -12846533 + AluSq SINE Alu 1 313 0 1255 221 83 57 chr4 171442261 171442768 -12845894 + L1MC4 LINE L1 5295 5814 -1994 3131 235 65 54 chr4 171442783 171443830 -12844832 + L1MC4 LINE L1 6691 7755 -287 2626 30 3 0 chr4 171443830 171444130 -12844532 - AluY SINE Alu -2 309 9 3131 235 65 54 chr4 171444130 171444275 -12844387 + L1MC4 LINE L1 7755 7897 -145 272 248 0 15 chr4 171444289 171444372 -12844290 + L1MC4 LINE L1 7728 8042 0 29 47 0 0 chr4 171444432 171444475 -12844187 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr4 171446180 171446203 -12842459 + AT_rich Low_complexity Low_complexity 1 23 0 1515 210 11 11 chr4 171446365 171446651 -12842011 - AluJo SINE Alu -26 286 1 405 336 38 58 chr4 171446760 171447323 -12841339 - L2 LINE L2 -940 2374 1776 21 0 0 0 chr4 171447855 171447876 -12840786 + AT_rich Low_complexity Low_complexity 1 21 0 1699 128 0 4 chr4 171448350 171448585 -12840077 + AluSq SINE Alu 13 246 -67 2407 70 0 10 chr4 171448686 171449000 -12839662 - AluY SINE Alu 0 311 1 632 286 131 9 chr4 171449432 171449761 -12838901 - L1ME3A LINE L1 -208 5962 5594 309 143 41 0 chr4 171450706 171450755 -12837907 + MLT1E1 LTR MaLR 1 51 -603 1005 245 61 0 chr4 171450788 171451033 -12837629 + MLT1E3 LTR MaLR 365 624 0 304 276 119 8 chr4 171451034 171451168 -12837494 - L1ME3A LINE L1 -1000 5146 4998 321 278 81 43 chr4 171451264 171451498 -12837164 + L1M4 LINE L1 4377 4619 -1527 1810 121 28 0 chr4 171451565 171451847 -12836815 + AluJb SINE Alu 14 303 -9 483 250 29 52 chr4 171451890 171452062 -12836600 + MER97a DNA MER1_type? 9 176 -718 248 293 142 26 chr4 171452112 171452344 -12836318 + L1M4 LINE L1 4740 4998 -1148 43658 43 1 1 chr4 171454616 171460772 -12827890 - L1PA3 LINE L1 -3 6152 1 1528 155 4 4 chr4 171461086 171461331 -12827331 - AluSx SINE Alu -8 304 60 180 111 0 0 chr4 171462490 171462517 -12826145 + (TA)n Simple_repeat Simple_repeat 2 28 0 297 0 0 0 chr4 171462603 171462636 -12826026 + (TG)n Simple_repeat Simple_repeat 2 34 0 1197 146 19 9 chr4 171462686 171462898 -12825764 + L1MA7 LINE L1 3353 3566 -2580 1470 204 41 81 chr4 171462932 171463374 -12825288 - MSTB1 LTR MaLR -3 429 6 8214 192 40 8 chr4 171463378 171466000 -12822662 + L1MA7 LINE L1 3579 6289 -2 23 54 0 0 chr4 171466905 171466942 -12821720 + AT_rich Low_complexity Low_complexity 1 37 0 227 152 0 0 chr4 171466946 171466992 -12821670 + LTR66 LTR ERVL 394 439 -171 595 231 106 5 chr4 171467396 171467595 -12821067 + LTR33 LTR ERVL 46 264 -257 1094 286 98 21 chr4 171467738 171468165 -12820497 - MLT2B1 LTR ERVL -60 460 1 2388 301 116 31 chr4 171468186 171469496 -12819166 - L2 LINE L2 -1872 1442 22 242 324 57 9 chr4 171470213 171470318 -12818344 - L2 LINE L2 -2993 321 212 351 121 0 0 chr4 171470626 171470684 -12817978 + (GA)n Simple_repeat Simple_repeat 2 59 0 1704 150 23 10 chr4 171471088 171471388 -12817274 + AluJo SINE Alu 1 304 -8 313 330 0 9 chr4 171471660 171471772 -12816890 - MLT1I LTR MaLR -236 173 63 1555 189 0 36 chr4 171472946 171473252 -12815410 - AluJb SINE Alu -11 301 7 1591 237 11 16 chr4 171473640 171474007 -12814655 + MLT1A1 LTR MaLR 1 365 0 26 0 0 0 chr4 171474032 171474058 -12814604 + AT_rich Low_complexity Low_complexity 1 26 0 5449 28 0 2 chr4 171474318 171474960 -12813702 - L1PA3 LINE L1 -1 6154 5514 24 67 0 0 chr4 171474962 171475007 -12813655 + AT_rich Low_complexity Low_complexity 1 45 0 228 301 54 76 chr4 171475820 171476136 -12812526 - L2 LINE L2 -2146 1168 860 711 282 51 95 chr4 171476239 171476653 -12812009 - L2 LINE L2 0 3313 2938 2949 177 29 26 chr4 171476653 171477023 -12811639 - L1PB4 LINE L1 -1 6155 5781 192 40 0 0 chr4 171477023 171477048 -12811614 + (TG)n Simple_repeat Simple_repeat 2 26 0 2949 177 29 26 chr4 171477048 171477299 -12811363 - L1PB4 LINE L1 -375 5781 5532 711 282 51 95 chr4 171477299 171477702 -12810960 - L2 LINE L2 -375 2938 2519 205 302 0 0 chr4 171477723 171477786 -12810876 - L2 LINE L2 -903 2411 2349 27 73 0 0 chr4 171479106 171479161 -12809501 + AT_rich Low_complexity Low_complexity 1 55 0 346 330 0 0 chr4 171479278 171479366 -12809296 - MIR SINE MIR -117 145 58 413 313 85 17 chr4 171479388 171479564 -12809098 + MIR SINE MIR 27 214 -48 2143 106 0 17 chr4 171479920 171480213 -12808449 - AluSq SINE Alu -21 292 5 366 314 34 14 chr4 171480885 171481092 -12807570 - L1MEd LINE L1 -5317 802 592 297 302 82 0 chr4 171481414 171481573 -12807089 - L1MEd LINE L1 -5890 229 58 1434 181 78 53 chr4 171482266 171482330 -12806332 - MLT1A2 LTR MaLR -4 370 309 2073 118 0 16 chr4 171482330 171482644 -12806018 + AluSc SINE Alu 1 309 0 1434 181 78 53 chr4 171482644 171482939 -12805723 - MLT1A2 LTR MaLR -65 309 2 12290 78 8 5 chr4 171483050 171485484 -12803178 - L1PA7 LINE L1 0 6154 3703 459 117 3 14 chr4 171485546 171485636 -12803026 - MLT1A1 LTR MaLR -51 416 250 222 193 0 0 chr4 171486181 171486238 -12802424 + (TA)n Simple_repeat Simple_repeat 2 58 0 322 239 11 0 chr4 171486296 171486384 -12802278 + (TA)n Simple_repeat Simple_repeat 1 89 0 1654 169 40 13 chr4 171487552 171487854 -12800808 - AluSg SINE Alu 0 310 1 1547 129 133 0 chr4 171488239 171488495 -12800167 - AluSx SINE Alu -18 294 5 1029 264 130 70 chr4 171488539 171489025 -12799637 - MLT1H1 LTR MaLR -33 562 3 238 298 188 32 chr4 171489388 171489606 -12799056 - MLT1L LTR MaLR -2 613 362 * 335 254 179 30 chr4 171489599 171489800 -12798862 - MLT1L LTR MaLR -366 249 19 35 78 0 0 chr4 171490505 171490582 -12798080 + AT_rich Low_complexity Low_complexity 1 77 0 321 300 33 0 chr4 171492454 171492544 -12796118 + MIR SINE MIR 57 149 -113 1845 141 33 7 chr4 171492600 171492899 -12795763 + AluJb SINE Alu 1 307 -5 767 163 5 33 chr4 171492948 171493132 -12795530 + CT-rich Low_complexity Low_complexity 2 180 0 942 300 69 13 chr4 171494379 171494696 -12793966 + LTR16A LTR ERVL 116 450 0 2280 73 0 0 chr4 171496980 171497255 -12791407 + AluY SINE Alu 1 275 -36 1378 204 18 14 chr4 171497311 171497595 -12791067 + AluJo SINE Alu 1 285 -27 23 33 0 0 chr4 171497604 171497634 -12791028 + AT_rich Low_complexity Low_complexity 1 30 0 2018 127 0 0 chr4 171498775 171499087 -12789575 - AluSx SINE Alu 0 312 1 640 318 33 4 chr4 171499153 171499395 -12789267 + MIR SINE MIR 11 259 -3 2116 195 30 34 chr4 171499519 171499991 -12788671 + LTR42 LTR ERVL 25 494 -1 2127 161 159 58 chr4 171500129 171500676 -12787986 - MER6A DNA MER2_type 0 605 4 273 228 178 30 chr4 171501272 171501373 -12787289 + MER77 LTR ERV1 79 194 -411 * 400 265 42 74 chr4 171501349 171501564 -12787098 + MER21B LTR ERV1 98 305 -558 21 0 0 0 chr4 171501891 171501912 -12786750 + AT_rich Low_complexity Low_complexity 1 21 0 30 93 0 0 chr4 171501970 171502056 -12786606 + AT_rich Low_complexity Low_complexity 1 86 0 22 0 0 0 chr4 171503306 171503328 -12785334 + AT_rich Low_complexity Low_complexity 1 22 0 225 379 28 23 chr4 171503471 171503648 -12785014 + L1ME LINE L1 471 648 -5882 1696 287 87 27 chr4 171503794 171505038 -12783624 + L1ME LINE L1 794 2086 -4454 208 185 62 0 chr4 171505112 171505177 -12783485 + (TA)n Simple_repeat Simple_repeat 2 70 0 327 273 56 20 chr4 171505190 171505439 -12783223 + L1ME LINE L1 2302 2559 -3981 282 306 51 51 chr4 171505436 171505632 -12783030 + L1MC4 LINE L1 15 210 -6330 * 1797 201 31 20 chr4 171505662 171506054 -12782608 - MSTD LTR MaLR 0 396 1 613 225 93 28 chr4 171506197 171506379 -12782283 + MLT1C LTR MaLR 1 194 -273 4669 238 98 25 chr4 171506394 171508771 -12779891 + L1MC4 LINE L1 806 3382 -3158 609 267 79 17 chr4 171508761 171509053 -12779609 + L1MC4 LINE L1 3628 3937 -2603 * 2167 246 86 36 chr4 171509100 171509384 -12779278 + L1MC4 LINE L1 4799 5067 -1493 302 0 26 0 chr4 171509384 171509422 -12779240 + (CA)n Simple_repeat Simple_repeat 2 40 0 2167 246 86 36 chr4 171509422 171510183 -12778479 + L1MC4 LINE L1 5067 5903 -657 579 81 30 0 chr4 171510183 171510282 -12778380 + (TAGA)n Simple_repeat Simple_repeat 4 105 0 2167 246 86 36 chr4 171510282 171510460 -12778202 + L1MC4 LINE L1 5903 6071 -489 2022 162 38 30 chr4 171510476 171510903 -12777759 + MSTB1 LTR MaLR 1 430 -2 817 149 22 83 chr4 171510910 171511091 -12777571 - MLT1B LTR MaLR 0 390 221 255 79 0 0 chr4 171511109 171511147 -12777515 + (GA)n Simple_repeat Simple_repeat 1 38 0 317 267 111 52 chr4 171511151 171511323 -12777339 - MLT1B LTR MaLR -206 184 3 500 193 131 28 chr4 171511328 171511504 -12777158 + L1MC4 LINE L1 6082 6275 -2161 * 1463 205 111 42 chr4 171511406 171511648 -12777014 + L1MA7 LINE L1 6168 6392 -293 2211 95 24 0 chr4 171511648 171511944 -12776718 + AluSg SINE Alu 1 303 -7 1463 205 111 42 chr4 171511944 171512180 -12776482 + L1MA7 LINE L1 6392 6679 -6 551 255 136 25 chr4 171512197 171512440 -12776222 + L1ME1 LINE L1 5892 6161 -5 958 229 28 0 chr4 171513446 171513664 -12774998 + MER58A DNA MER1_type 1 224 0 953 308 109 24 chr4 171513701 171514194 -12774468 - MLT1H1 LTR MaLR -18 537 3 35 0 0 0 chr4 171514403 171514438 -12774224 + AT_rich Low_complexity Low_complexity 1 35 0 2225 181 12 24 chr4 171515403 171515818 -12772844 + MSTC LTR MaLR 19 428 0 2116 133 3 0 chr4 171515827 171516136 -12772526 + AluSx SINE Alu 1 310 -2 195 361 98 22 chr4 171516441 171516624 -12772038 - L2 LINE L2 -219 3094 2898 870 292 117 13 chr4 171516804 171517181 -12771481 - MLT1H LTR MaLR -131 418 3 317 360 86 32 chr4 171517183 171517555 -12771107 - L2 LINE L2 -491 2823 2432 11014 234 63 34 chr4 171517569 171517716 -12770946 - L1MA10 LINE L1 -18 6380 6239 249 33 0 0 chr4 171517716 171517746 -12770916 + (TTA)n Simple_repeat Simple_repeat 1 30 0 11014 234 63 34 chr4 171517746 171518107 -12770555 - L1MA10 LINE L1 -159 6239 5890 342 0 0 0 chr4 171518107 171518145 -12770517 + (TG)n Simple_repeat Simple_repeat 2 39 0 11014 234 63 34 chr4 171518145 171524129 -12764533 - L1MA10 LINE L1 -508 5890 1 783 256 36 31 chr4 171524441 171524801 -12763861 - Charlie1 DNA MER1_type -15 2746 2385 1105 205 36 65 chr4 171525147 171525454 -12763208 - MLT1B LTR MaLR -2 388 91 1888 94 0 0 chr4 171525466 171525721 -12762941 + AluY SINE Alu 57 311 0 356 154 0 46 chr4 171525937 171526002 -12762660 + Tigger2 DNA MER2_type 1 62 -2656 3287 36 0 0 chr4 171526174 171526565 -12762097 - L1PA3 LINE L1 -3 6152 5762 2358 185 35 5 chr4 171526589 171527011 -12761651 + Tigger2 DNA MER2_type 2284 2718 0 1043 191 25 5 chr4 171527098 171527302 -12761360 + L1M1 LINE L1 27 234 -7331 1560 219 0 6 chr4 171527335 171527650 -12761012 - MER57A LTR ERV1 -3 400 88 2965 167 49 3 chr4 171527656 171528306 -12760356 + L1M1 LINE L1 2214 2856 -4709 1908 192 91 32 chr4 171528321 171528784 -12759878 + LTR2B LTR ERV1 1 490 0 5968 201 44 33 chr4 171528800 171530475 -12758187 + L1M1 LINE L1 2895 4604 -2961 2220 61 16 42 chr4 171530475 171530786 -12757876 + AluY SINE Alu 1 303 -8 5968 201 44 33 chr4 171530786 171531356 -12757306 + L1M1 LINE L1 4604 5166 -2399 204 257 0 0 chr4 171532164 171532234 -12756428 + GA-rich Low_complexity Low_complexity 3 72 0 1491 148 62 4 chr4 171532927 171533170 -12755492 - AluSp SINE Alu -30 283 27 453 245 63 14 chr4 171533181 171533324 -12755338 - L1ME3 LINE L1 -1 6161 6012 2172 112 86 69 chr4 171534032 171534266 -12754396 - MSTA LTR MaLR -2 426 180 1937 141 0 0 chr4 171534266 171534549 -12754113 - AluSx SINE Alu -27 285 3 2172 112 86 69 chr4 171534549 171534733 -12753929 - MSTA LTR MaLR -248 180 1 34 57 0 34 chr4 171535701 171535789 -12752873 + AT_rich Low_complexity Low_complexity 1 85 0 823 222 0 6 chr4 171537760 171537922 -12750740 + MLT1A2 LTR MaLR 1 161 -213 241 192 5 16 chr4 171537925 171537977 -12750685 + L1MB4 LINE L1 6100 6151 -32 372 43 0 0 chr4 171537977 171538023 -12750639 + (TA)n Simple_repeat Simple_repeat 2 47 0 2167 129 3 0 chr4 171538023 171538325 -12750337 - AluSx SINE Alu -9 303 1 241 192 5 16 chr4 171538325 171538355 -12750307 + L1MB4 LINE L1 6149 6182 -1 639 235 54 41 chr4 171538364 171538585 -12750077 + MLT1A2 LTR MaLR 151 374 0 2390 159 48 7 chr4 171539037 171539452 -12749210 + Tigger2a DNA MER2_type 2 433 -1 764 146 8 15 chr4 171541179 171541309 -12747353 + AluJo SINE Alu 9 137 -175 952 254 34 53 chr4 171541716 171542071 -12746591 + MLT1D LTR MaLR 57 404 -101 36 62 0 0 chr4 171542113 171542177 -12746485 + AT_rich Low_complexity Low_complexity 1 64 0 1524 231 27 45 chr4 171542405 171542891 -12745771 - MLT1D LTR MaLR -7 498 22 326 100 17 0 chr4 171543050 171543110 -12745552 + (GA)n Simple_repeat Simple_repeat 1 61 0 5918 133 19 16 chr4 171543211 171544177 -12744485 + LTR5 LTR ERVK 1 969 0 362 285 167 7 chr4 171544177 171544315 -12744347 + MER5A DNA MER1_type 29 189 0 441 311 105 11 chr4 171544346 171544536 -12744126 + MIR SINE MIR 9 216 -46 29 28 0 0 chr4 171545475 171545511 -12743151 + AT_rich Low_complexity Low_complexity 1 36 0 357 238 20 30 chr4 171545974 171546075 -12742587 + MIR SINE MIR 143 242 -20 264 30 0 0 chr4 171546777 171546810 -12741852 + (CA)n Simple_repeat Simple_repeat 2 34 0 3719 138 86 29 chr4 171547015 171547246 -12741416 - MER50 LTR ERV1 -12 722 506 18389 86 4 4 chr4 171547246 171550625 -12738037 - L1PA7 LINE L1 0 6154 2763 3719 138 86 29 chr4 171550625 171551076 -12737586 - MER50 LTR ERV1 -228 506 1 368 339 23 0 chr4 171652432 171652562 -12636100 + MIR SINE MIR 20 152 -110 356 276 26 17 chr4 171653331 171653447 -12635215 - MIR SINE MIR 0 262 146 392 301 104 44 chr4 171653635 171653979 -12634683 + L1MC4a LINE L1 5580 5942 -222 511 290 161 4 chr4 171654039 171654294 -12634368 + L2 LINE L2 1754 2048 -1266 245 266 64 46 chr4 171654356 171654465 -12634197 + L2 LINE L2 2169 2279 -1035 245 391 23 8 chr4 171654478 171654611 -12634051 + L2 LINE L2 2551 2685 -629 497 159 34 0 chr4 171654958 171655046 -12633616 + MLT1A1 LTR MaLR 272 362 -3 274 262 200 0 chr4 171655083 171655228 -12633434 - L1ME LINE L1 -340 5781 5608 802 278 50 97 chr4 171655683 171656126 -12632536 - MLT1J LTR MaLR -1 510 89 2364 182 52 42 chr4 171656394 171657079 -12631583 - L1MC/D LINE L1 -544 5789 5101 1758 157 10 10 chr4 171657080 171657385 -12631277 - AluJb SINE Alu 0 312 8 247 272 91 73 chr4 171657847 171658079 -12630583 - L1ME2 LINE L1 -9 6155 5920 1005 243 181 19 chr4 171658112 171658663 -12629999 - L1MC/D LINE L1 -3054 3092 2429 1869 144 14 0 chr4 171658663 171658947 -12629715 - AluSq SINE Alu -25 288 1 1005 243 181 19 chr4 171658947 171659013 -12629649 - L1MC/D LINE L1 -3717 2429 2375 967 155 62 16 chr4 171659472 171659666 -12628996 + L1MA2 LINE L1 6054 6256 -48 2969 166 70 74 chr4 171659667 171660570 -12628092 - LTR1 LTR ERV1 0 785 2 509 198 9 36 chr4 171660596 171660707 -12627955 - MLT1A1 LTR MaLR -254 111 4 4149 47 4 0 chr4 171660731 171661247 -12627415 - L1PA5 LINE L1 -1267 4879 4362 6893 48 29 0 chr4 171661251 171662508 -12626154 + L1PA5 LINE L1 4873 6153 -1 2256 101 0 0 chr4 171663229 171663525 -12625137 - AluSc SINE Alu -13 296 1 3047 110 126 22 chr4 171663969 171664525 -12624137 - LTR18B LTR ERVL 0 614 1 243 262 47 9 chr4 171665858 171665965 -12622697 - L1M LINE L1 -745 5401 5317 2292 97 0 0 chr4 171666602 171666945 -12621717 + AluY SINE Alu 1 343 0 2233 119 0 3 chr4 171667234 171667544 -12621118 + AluSx SINE Alu 1 309 -3 507 216 62 68 chr4 171668083 171668245 -12620417 + MER5B DNA MER1_type 18 178 0 1669 173 64 9 chr4 171668430 171668759 -12619903 + MER7A DNA MER2_type 1 345 -1 1108 152 126 0 chr4 171669627 171669825 -12618837 - MLT1D LTR MaLR 0 505 283 1069 188 89 38 chr4 171670227 171670519 -12618143 - LTR52 LTR ERVL -105 316 10 456 285 101 43 chr4 171670519 171670936 -12617726 - L1M4 LINE L1 -1169 4977 4537 736 120 33 33 chr4 171670949 171671099 -12617563 + L1MB1 LINE L1 6017 6166 -2 180 0 0 0 chr4 171671103 171671123 -12617539 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 29358 27 1 0 chr4 171671124 171675424 -12613238 - L1PA3 LINE L1 -12 6143 1842 365 259 89 0 chr4 171675601 171675713 -12612949 + LTR16C LTR ERVL 368 489 -2 2244 92 0 0 chr4 171675989 171676304 -12612358 + AluSx SINE Alu 1 315 0 6121 184 40 21 chr4 171678841 171680151 -12608511 + L1MC1 LINE L1 20 1355 -5071 793 118 8 16 chr4 171680151 171680278 -12608384 - LTR1 LTR ERV1 0 785 660 462 159 11 23 chr4 171680290 171680378 -12608284 + L1MC1 LINE L1 1546 1632 -4794 * 4560 261 57 28 chr4 171680377 171682958 -12605704 + L1MC1 LINE L1 3878 6613 0 1847 271 62 30 chr4 171683532 171684371 -12604291 + L1ME1 LINE L1 3512 4377 -1769 2648 242 52 8 chr4 171684512 171685226 -12603436 + L1ME1 LINE L1 5415 6159 -7 25 0 0 0 chr4 171686647 171686672 -12601990 + AT_rich Low_complexity Low_complexity 1 25 0 328 279 103 50 chr4 171686943 171687302 -12601360 - L1MC5 LINE L1 -273 7688 7311 25 31 0 0 chr4 171688621 171688653 -12600009 + AT_rich Low_complexity Low_complexity 1 32 0 32 0 0 0 chr4 171688734 171688766 -12599896 + AT_rich Low_complexity Low_complexity 1 32 0 305 274 113 47 chr4 171688925 171689137 -12599525 + L1ME LINE L1 5388 5613 -508 1441 220 47 38 chr4 171689858 171690304 -12598358 - L1MD3 LINE L1 -852 7143 6694 238 111 83 111 chr4 171690289 171690361 -12598301 + L1MC4a LINE L1 7085 7154 -654 * 267 245 0 0 chr4 171690476 171690529 -12598133 + MLT1F1 LTR MaLR 73 125 -442 1902 210 81 62 chr4 171690529 171691096 -12597566 + L1MD3 LINE L1 7404 7981 -14 267 320 120 39 chr4 171695833 171696067 -12592595 - MIR SINE MIR -6 256 4 1888 184 12 6 chr4 171697151 171697483 -12591179 + MLT2B3 LTR ERVL 3 336 -218 641 163 0 59 chr4 171697483 171697618 -12591044 + MLT2A2 LTR ERVL 1 127 -326 668 156 30 7 chr4 171697719 171697854 -12590808 + MLT2B3 LTR ERVL 367 504 -11 822 314 71 84 chr4 171699078 171699196 -12589466 + ERVL LTR ERVL 1904 2022 -3742 1276 252 60 108 chr4 171699196 171699883 -12588779 + MLT1E1 LTR MaLR 1 654 0 822 314 71 84 chr4 171699883 171699956 -12588706 + ERVL LTR ERVL 2022 2094 -3670 2075 114 3 3 chr4 171699956 171700253 -12588409 + AluSc SINE Alu 1 297 -12 822 314 71 84 chr4 171700253 171700837 -12587825 + ERVL LTR ERVL 2094 2670 -3094 1344 363 54 35 chr4 171700946 171702328 -12586334 + ERVL LTR ERVL 2838 4286 -1464 799 281 127 4 chr4 171703074 171703334 -12585328 - MLT1D LTR MaLR -213 292 1 553 343 24 28 chr4 171703581 171703829 -12584833 - MIR SINE MIR -10 252 6 436 318 129 20 chr4 171704345 171704546 -12584116 - MIR SINE MIR -14 248 26 2155 119 0 26 chr4 171704746 171705057 -12583605 + AluSg SINE Alu 1 303 -7 975 187 16 0 chr4 171705334 171705521 -12583141 + MER2 DNA MER2_type 22 211 -134 2028 112 42 3 chr4 171705528 171705815 -12582847 - AluSg SINE Alu -12 298 1 911 247 31 31 chr4 171705875 171706098 -12582564 + Tigger7 DNA MER2_type 7 229 -504 559 186 20 0 chr4 171706104 171706206 -12582456 + Tigger7 DNA MER2_type 2482 2585 -2 1333 231 63 3 chr4 171706275 171706625 -12582037 - L1ME1 LINE L1 -5 6161 5791 934 243 68 39 chr4 171707518 171707855 -12580807 + L1MCc LINE L1 38 384 -6039 1378 118 14 19 chr4 171707898 171708110 -12580552 + AluSq SINE Alu 3 213 -100 270 135 0 0 chr4 171708120 171708157 -12580505 + Tigger2 DNA MER2_type 1 37 -2681 1500 139 0 0 chr4 171708234 171708449 -12580213 + AluSg/x SINE Alu 81 295 -15 309 335 73 11 chr4 171708669 171708860 -12579802 + ERVL LTR ERVL 2391 2593 -3171 791 327 55 23 chr4 171708902 171709248 -12579414 + ERVL LTR ERVL 4041 4397 -1367 * 1045 302 89 30 chr4 171709244 171709985 -12578677 + ERVL LTR ERVL 2603 3387 -2267 2324 76 0 0 chr4 171710017 171710305 -12578357 + AluY SINE Alu 3 290 -21 413 338 69 9 chr4 171710354 171710570 -12578092 + ERVL LTR ERVL 3439 3667 -1987 1614 322 67 30 chr4 171710652 171711438 -12577224 + ERVL LTR ERVL 3792 4606 -1158 722 230 7 17 chr4 171711441 171711733 -12576929 + MLT1A1 LTR MaLR 1 365 0 2331 95 3 0 chr4 171712532 171712837 -12575825 + AluSx SINE Alu 1 306 -6 1898 129 24 3 chr4 171713148 171713435 -12575227 + AluSx SINE Alu 4 296 -16 28 29 0 0 chr4 171713729 171713764 -12574898 + AT_rich Low_complexity Low_complexity 1 35 0 367 294 48 32 chr4 171713876 171714124 -12574538 + L1M4 LINE L1 2177 2428 -3718 260 328 59 0 chr4 171714589 171714708 -12573954 + ERVL LTR ERVL 4740 4865 -899 775 203 70 0 chr4 171714722 171714880 -12573782 - LTR52 LTR ERVL -25 396 228 262 180 20 0 chr4 171714918 171714968 -12573694 - MLT1A1 LTR MaLR -218 147 97 * 702 221 30 74 chr4 171714960 171715191 -12573471 - LTR52 LTR ERVL -200 221 1 2117 104 24 0 chr4 171715558 171715856 -12572806 - AluSp SINE Alu -7 306 2 633 334 75 35 chr4 171716653 171717054 -12571608 - LTR33 LTR ERVL -75 446 30 435 240 147 20 chr4 171717155 171717359 -12571303 + L1ME LINE L1 5595 5824 -297 1321 117 5 5 chr4 171717359 171717564 -12571098 - Tigger7 DNA MER2_type -9 2478 2274 * 1616 201 46 3 chr4 171717562 171717885 -12570777 - Tigger7 DNA MER2_type -2048 439 103 230 269 34 0 chr4 171718009 171718128 -12570534 + (TA)n Simple_repeat Simple_repeat 1 123 0 1746 123 22 83 chr4 171718133 171718320 -12570342 - AluJb SINE Alu -8 304 144 2256 104 0 0 chr4 171718320 171718609 -12570053 - AluSx SINE Alu -23 289 1 1746 123 22 83 chr4 171718609 171718745 -12569917 - AluJb SINE Alu -168 144 1 1995 98 0 0 chr4 171718756 171719021 -12569641 - AluSg1 SINE Alu 0 309 45 22 0 0 0 chr4 171720904 171720926 -12567736 + AT_rich Low_complexity Low_complexity 1 22 0 2219 114 0 0 chr4 171721149 171721448 -12567214 - AluSq SINE Alu -6 307 9 7005 61 16 3 chr4 171721468 171723121 -12565541 - L1PA7 LINE L1 -3 6151 4488 27 73 0 0 chr4 171723435 171723490 -12565172 + AT_rich Low_complexity Low_complexity 1 55 0 292 261 0 0 chr4 171723852 171723940 -12564722 - L1ME1 LINE L1 -4 6162 6075 819 280 71 92 chr4 171723950 171724969 -12563693 - L1MEc LINE L1 -5298 1098 102 350 266 155 31 chr4 171725122 171725348 -12563314 + L1MC4a LINE L1 3692 3945 -2201 309 266 97 45 chr4 171725485 171725639 -12563023 + L1MC4a LINE L1 4161 4322 -1824 1529 132 82 63 chr4 171726054 171726372 -12562290 - MLT1B LTR MaLR -66 324 1 328 303 33 8 chr4 171726845 171726967 -12561695 + L1MC4a LINE L1 5813 5937 -1871 266 322 176 15 chr4 171727254 171727453 -12561209 - MIR SINE MIR -1 261 31 298 216 49 78 chr4 171727839 171727941 -12560721 - MER45 DNA AcHobo -64 114 16 1843 299 40 67 chr4 171728066 171728721 -12559941 + L2 LINE L2 2040 2642 -671 1824 157 7 10 chr4 171728721 171729027 -12559635 - AluSq SINE Alu -8 305 1 1843 299 40 67 chr4 171729027 171729662 -12559000 + L2 LINE L2 2642 3293 -20 21 0 0 0 chr4 171730588 171730609 -12558053 + AT_rich Low_complexity Low_complexity 1 21 0 313 313 174 42 chr4 171730663 171730867 -12557795 - L2 LINE L2 -893 2421 2161 3297 176 58 7 chr4 171730867 171731543 -12557119 - MER67C LTR ERV1 0 710 1 313 313 174 42 chr4 171731543 171731648 -12557014 - L2 LINE L2 -1153 2161 2071 322 212 77 123 chr4 171731730 171731884 -12556778 + MLT1B LTR MaLR 1 146 -244 7812 173 51 24 chr4 171731884 171733369 -12555293 - MER52A LTR ERV1 0 1755 231 2173 116 0 0 chr4 171733535 171733820 -12554842 + AluSx SINE Alu 4 288 -24 741 87 17 0 chr4 171735809 171735924 -12552738 - L1P LINE L1 -1770 4376 4260 * 8084 87 3 3 chr4 171735923 171737056 -12551606 + L1P LINE L1 3105 4236 -1910 344 340 21 21 chr4 171737272 171737416 -12551246 - MER90 LTR ERV1 -9 566 423 712 194 35 15 chr4 171738775 171739002 -12549660 - MER89 LTR ERV1 -227 332 2 295 272 61 61 chr4 171740658 171740805 -12547857 + MIR3 SINE MIR 23 169 -39 1735 232 63 18 chr4 171740855 171741299 -12547363 + MLT1C LTR MaLR 3 466 -1 2220 76 48 0 chr4 171742573 171742864 -12545798 + AluY SINE Alu 1 305 -6 330 251 104 84 chr4 171743384 171743635 -12545027 + MLT1H LTR MaLR 7 262 -287 305 309 121 13 chr4 171743808 171743957 -12544705 + MLT1L LTR MaLR 136 300 -315 312 243 153 27 chr4 171744005 171744116 -12544546 + MLT1L LTR MaLR 369 493 -122 637 239 68 6 chr4 171744254 171744417 -12544245 - MER58B DNA MER1_type 0 341 169 760 189 0 0 chr4 171745268 171745400 -12543262 - FLAM_C SINE Alu -1 132 1 209 141 90 0 chr4 171745672 171745750 -12542912 + (TA)n Simple_repeat Simple_repeat 2 86 0 331 273 24 61 chr4 171746101 171746266 -12542396 + L1M4 LINE L1 4100 4258 -1888 590 177 35 9 chr4 171746562 171746675 -12541987 + FLAM_A SINE Alu 6 121 -21 22 35 0 0 chr4 171747104 171747133 -12541529 + AT_rich Low_complexity Low_complexity 1 29 0 430 53 0 0 chr4 171747143 171747200 -12541462 + L1P LINE L1 1637 1693 -4453 330 345 109 11 chr4 171747952 171748126 -12540536 - MIR SINE MIR -57 205 15 1388 214 17 17 chr4 171748143 171748438 -12540224 + AluJo SINE Alu 1 295 -17 1798 181 27 12 chr4 171748694 171749025 -12539637 + MER1B DNA MER1_type 2 337 0 2036 150 0 0 chr4 171750286 171750579 -12538083 + AluSx SINE Alu 1 293 -19 1897 119 49 11 chr4 171751698 171751983 -12536679 - AluSq SINE Alu -15 298 3 284 314 50 20 chr4 171752847 171753036 -12535626 + MIR SINE MIR 7 200 -62 260 353 29 0 chr4 171753120 171753222 -12535440 + MIR3 SINE MIR 101 205 -3 22 35 0 0 chr4 171753455 171753484 -12535178 + AT_rich Low_complexity Low_complexity 1 29 0 339 25 0 0 chr4 171753967 171754007 -12534655 + (CA)n Simple_repeat Simple_repeat 1 40 0 2073 206 85 35 chr4 171754008 171754970 -12533692 + Tigger6 DNA MER2_type 2 1592 -5 1107 177 0 44 chr4 171755003 171755206 -12533456 + AluJb SINE Alu 97 290 -22 1717 182 114 8 chr4 171755246 171755729 -12532933 - L1MA6 LINE L1 -2684 3462 2929 8851 173 43 14 chr4 171755730 171756128 -12532534 + L1MA6 LINE L1 3454 3839 -2461 2006 133 24 58 chr4 171756128 171756505 -12532157 + THE1B LTR MaLR 1 364 0 8851 173 43 14 chr4 171756505 171758814 -12529848 + L1MA6 LINE L1 3839 6251 -49 549 311 65 35 chr4 171758924 171759413 -12529249 + L1ME2 LINE L1 5449 5952 -212 289 364 0 0 chr4 171761387 171761497 -12527165 - MER94 DNA DNA 0 134 25 360 294 78 74 chr4 171761741 171762010 -12526652 - MLT1J LTR MaLR -7 504 235 345 276 167 14 chr4 171762298 171762472 -12526190 + MIR SINE MIR 1 217 -45 2203 74 10 17 chr4 171762472 171762768 -12525894 + AluY SINE Alu 1 294 -17 345 276 167 14 chr4 171762768 171762814 -12525848 + MIR SINE MIR 217 255 -7 2177 114 7 0 chr4 171763869 171764175 -12524487 + AluSp SINE Alu 4 311 -2 361 381 169 9 chr4 171764883 171765327 -12523335 - L3 LINE CR1 -11 1566 1052 27 29 0 0 chr4 171765361 171765395 -12523267 + AT_rich Low_complexity Low_complexity 1 34 0 518 308 178 9 chr4 171765438 171765652 -12523010 - MIR SINE MIR -1 261 12 541 264 81 6 chr4 171765660 171765834 -12522828 + MER5A DNA MER1_type 1 187 -2 21 57 0 0 chr4 171766472 171766507 -12522155 + AT_rich Low_complexity Low_complexity 1 35 0 201 256 198 35 chr4 171766915 171767001 -12521661 + MIR3 SINE MIR 9 108 -100 239 328 62 39 chr4 171769072 171769200 -12519462 - L2 LINE L2 -1285 2029 1899 328 346 103 20 chr4 171769331 171769623 -12519039 - L2 LINE L2 -2799 515 200 2432 114 17 3 chr4 171769779 171770138 -12518524 + THE1B LTR MaLR 1 364 0 363 218 13 0 chr4 171770341 171770419 -12518243 - U13 snRNA snRNA -24 80 2 305 318 18 18 chr4 171770570 171770586 -12518076 + MER5A DNA MER1_type 2 17 -172 231 397 32 16 chr4 171770586 171770712 -12517950 - MER5A DNA MER1_type -3 186 59 2617 87 151 177 chr4 171770817 171771496 -12517166 - LTR12 LTR ERV1 -55 2383 57 228 169 0 119 chr4 171771496 171771555 -12517107 - LTR30 LTR ERV1 -670 52 1 2074 115 3 10 chr4 171771679 171771975 -12516687 + AluSx SINE Alu 19 312 0 199 314 0 0 chr4 171771989 171772040 -12516622 + L2 LINE L2 3263 3313 0 1443 334 153 39 chr4 171772456 171773870 -12514792 + L2 LINE L2 615 2190 -1124 341 261 34 0 chr4 171774111 171774199 -12514463 + L2 LINE L2 2280 2370 -944 21 0 0 0 chr4 171774214 171774235 -12514427 + AT_rich Low_complexity Low_complexity 1 21 0 2123 178 62 19 chr4 171774270 171774921 -12513741 - MER72 LTR ERV1 0 722 10 605 307 144 48 chr4 171775015 171775702 -12512960 + L2 LINE L2 2545 3297 -16 248 270 42 74 chr4 171776102 171776291 -12512371 + MER112 DNA MER1_type 72 254 -6 1957 106 11 3 chr4 171779005 171779288 -12509374 - AluSx SINE Alu -24 288 4 410 330 124 9 chr4 171780126 171780359 -12508303 + MIR SINE MIR 3 262 0 369 0 0 0 chr4 171781049 171781090 -12507572 + (CA)n Simple_repeat Simple_repeat 1 41 0 389 281 92 39 chr4 171781422 171782141 -12506521 + L1MCc LINE L1 1288 2261 -4861 446 149 0 0 chr4 171782147 171782214 -12506448 + AluS SINE Alu 1 67 -243 315 269 66 48 chr4 171782291 171782407 -12506255 + L1MCc LINE L1 2461 2582 -4540 1956 144 13 0 chr4 171782407 171782713 -12505949 - AluSx SINE Alu -2 310 1 315 269 66 48 chr4 171782713 171782763 -12505899 + L1MCc LINE L1 2582 2630 -4492 1619 189 10 13 chr4 171783191 171783493 -12505169 - AluJb SINE Alu -11 301 1 21 36 0 0 chr4 171783649 171783677 -12504985 + AT_rich Low_complexity Low_complexity 1 28 0 2396 85 0 0 chr4 171783864 171784169 -12504493 + AluSc SINE Alu 5 309 0 1739 159 48 17 chr4 171784178 171784529 -12504133 + L1MC1 LINE L1 5967 6328 -5 223 267 0 0 chr4 171787498 171787543 -12501119 - MIR SINE MIR -170 92 48 2217 70 0 14 chr4 171789865 171790173 -12498489 - AluY SINE Alu 0 304 1 1435 241 147 71 chr4 171790447 171791177 -12497485 + LTR1B LTR ERV1 1 785 -41 2131 52 48 4 chr4 171791275 171791572 -12497090 - AluY SINE Alu 0 309 1 4332 181 23 9 chr4 171792101 171793048 -12495614 - L1MB1 LINE L1 -14 6154 5193 462 202 11 0 chr4 171793058 171793147 -12495515 - Tigger5 DNA MER2_type 0 2323 2234 263 216 39 0 chr4 171793156 171793207 -12495455 - Tigger5 DNA MER2_type -2270 53 1 3276 179 33 4 chr4 171793212 171793901 -12494761 - L1MB1 LINE L1 -967 5179 4471 222 299 34 82 chr4 171794879 171795026 -12493636 + L2 LINE L2 3118 3257 -56 241 370 30 52 chr4 171797066 171797201 -12491461 + L2 LINE L2 3141 3272 0 4700 152 20 16 chr4 171797425 171798311 -12490351 + L1MA6 LINE L1 5411 6300 0 303 322 27 47 chr4 171799433 171799582 -12489080 + L2 LINE L2 3127 3272 0 259 297 0 27 chr4 171801180 171801254 -12487408 + MIR SINE MIR 181 252 -10 2391 231 96 10 chr4 171801394 171801991 -12486671 - MER82 DNA MER2_type -5 648 1 647 98 41 8 chr4 171802711 171802834 -12485828 - AluSc SINE Alu -30 279 153 21 0 0 0 chr4 171803498 171803519 -12485143 + AT_rich Low_complexity Low_complexity 1 21 0 2267 159 47 5 chr4 171806202 171806611 -12482051 + MSTB LTR MaLR 1 426 0 441 0 0 0 chr4 171808637 171808686 -12479976 + (TG)n Simple_repeat Simple_repeat 1 49 0 200 330 183 37 chr4 171808692 171809041 -12479621 + L2 LINE L2 2578 2977 -337 5011 85 13 1 chr4 171809128 171809842 -12478820 - LTR30 LTR ERV1 0 722 1 902 191 17 1 chr4 171809871 171810059 -12478603 - MSTB LTR MaLR -2 428 222 928 226 34 17 chr4 171810166 171810400 -12478262 - MSTB LTR MaLR -188 238 1 2107 105 0 43 chr4 171811812 171812136 -12476526 + AluSx SINE Alu 1 310 -2 4817 173 16 6 chr4 171812548 171812560 -12476102 - L1P5 LINE L1 -359 5792 5782 231 114 0 0 chr4 171812560 171812595 -12476067 + (CA)n Simple_repeat Simple_repeat 2 36 0 4817 173 16 6 chr4 171812595 171814152 -12474510 - L1P5 LINE L1 -369 5782 4214 346 281 60 65 chr4 171817390 171817575 -12471087 + MIR SINE MIR 2 185 -77 965 190 158 0 chr4 171819504 171819783 -12468879 - MER33 DNA MER1_type 0 324 2 1537 156 60 34 chr4 171821095 171821554 -12467108 + MER51A LTR ERV1 1 634 0 193 275 145 0 chr4 171822264 171822333 -12466329 - L2 LINE L2 -26 3246 3168 237 279 87 19 chr4 171823193 171823297 -12465365 - L2 LINE L2 -4 3309 3199 23 33 0 0 chr4 171824313 171824343 -12464319 + AT_rich Low_complexity Low_complexity 1 30 0 24 77 0 0 chr4 171824508 171824560 -12464102 + AT_rich Low_complexity Low_complexity 1 52 0 618 291 96 36 chr4 171825110 171825545 -12463117 - MLT1G1 LTR MaLR -104 486 1 270 81 0 0 chr4 171825779 171825816 -12462846 + (CA)n Simple_repeat Simple_repeat 2 38 0 21 36 0 0 chr4 171826749 171826777 -12461885 + AT_rich Low_complexity Low_complexity 1 28 0 1868 126 29 4 chr4 171826825 171827103 -12461559 + AluY SINE Alu 1 285 -26 415 126 27 18 chr4 171827107 171827218 -12461444 + (TA)n Simple_repeat Simple_repeat 1 112 0 21 0 0 0 chr4 171827296 171827317 -12461345 + AT_rich Low_complexity Low_complexity 1 21 0 241 67 0 0 chr4 171827802 171827832 -12460830 - THE1C LTR MaLR 0 375 346 469 35 0 0 chr4 171827932 171827989 -12460673 - THE1C LTR MaLR -318 57 1 1034 277 61 22 chr4 171828155 171828650 -12460012 + L1ME1 LINE L1 2118 2631 -3515 2852 123 25 15 chr4 171828669 171829141 -12459521 + L1MB2 LINE L1 5659 6135 -36 4655 251 117 24 chr4 171829164 171831059 -12457603 + L1ME1 LINE L1 2663 4380 -1786 1892 138 34 55 chr4 171831059 171831442 -12457220 - THE1C LTR MaLR 0 375 1 4655 251 117 24 chr4 171831442 171832737 -12455925 + L1ME1 LINE L1 4380 6156 -10 4140 123 58 84 chr4 171934370 171934714 -12353948 - LTR1 LTR ERV1 0 785 434 195 69 0 0 chr4 171934714 171934743 -12353919 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 2117 81 3 21 chr4 171934748 171935031 -12353631 - AluSp SINE Alu -35 278 1 4140 123 58 84 chr4 171935031 171935486 -12353176 - LTR1 LTR ERV1 -355 430 1 2001 96 10 73 chr4 171935659 171935973 -12352689 - AluY SINE Alu -17 294 1 23 0 0 0 chr4 171936213 171936236 -12352426 + AT_rich Low_complexity Low_complexity 1 23 0 2437 63 3 3 chr4 171936268 171936568 -12352094 - AluY SINE Alu -2 309 10 3041 162 28 2 chr4 171936643 171937142 -12351520 - MER41E LTR ERV1 0 512 1 189 94 0 0 chr4 171939109 171939141 -12349521 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 600 238 40 7 chr4 171939464 171939615 -12349047 - MLT2B1 LTR ERVL -66 454 299 1955 159 126 40 chr4 171939723 171940343 -12348319 - pTR5 LTR ERV1 -497 1941 57 2036 97 68 0 chr4 171941134 171941256 -12347406 + AluSg SINE Alu 1 113 -197 335 40 0 20 chr4 171941256 171941306 -12347356 + (CA)n Simple_repeat Simple_repeat 2 50 0 2036 97 68 0 chr4 171941306 171941461 -12347201 + AluSg SINE Alu 113 297 -13 2374 84 0 10 chr4 171943632 171943942 -12344720 - AluY SINE Alu -4 307 1 2453 84 3 3 chr4 171944246 171944555 -12344107 + AluSc SINE Alu 1 309 0 1124 159 0 32 chr4 171944555 171944744 -12343918 + AluJb SINE Alu 130 312 0 236 285 118 9 chr4 171945242 171945354 -12343308 - MIR SINE MIR -65 143 33 3174 58 5 52 chr4 171946706 171946782 -12341880 + L1P LINE L1 4113 4191 -1955 3044 133 26 34 chr4 171946782 171947278 -12341384 + LTR22B LTR ERVK 1 492 0 3174 58 5 52 chr4 171947278 171947597 -12341065 + L1P LINE L1 4191 4487 -1659 2347 72 3 3 chr4 171947597 171947901 -12340761 + AluY SINE Alu 1 304 -7 3174 58 5 52 chr4 171947901 171947951 -12340711 + L1P LINE L1 4487 4538 -1608 185 0 40 0 chr4 171947964 171947989 -12340673 + (TTA)n Simple_repeat Simple_repeat 2 27 0 978 79 5 12 chr4 171948028 171948231 -12340431 - AluY SINE Alu -70 241 3 229 332 88 24 chr4 171948249 171948499 -12340163 - L2 LINE L2 -12 3301 3036 634 333 154 26 chr4 171948540 171948922 -12339740 + MLT1K LTR MaLR 18 448 -140 366 199 19 19 chr4 171949277 171949433 -12339229 + (TA)n Simple_repeat Simple_repeat 2 157 0 211 311 189 30 chr4 171949992 171950156 -12338506 - MIR SINE MIR -6 256 67 2741 148 68 9 chr4 171950484 171950943 -12337719 - LTR45B LTR ERV1 -2 487 2 293 258 26 126 chr4 171951696 171951748 -12336914 - MIR SINE MIR -44 218 162 2271 59 7 36 chr4 171951748 171952051 -12336611 - AluY SINE Alu -17 294 1 293 258 26 126 chr4 171952051 171952188 -12336474 - MIR SINE MIR -100 162 48 1183 194 86 146 chr4 171952194 171952669 -12335993 + LTR1 LTR ERV1 1 418 -367 1904 81 18 18 chr4 171952669 171952982 -12335680 + AluY SINE Alu 1 311 0 1183 194 86 146 chr4 171952982 171953239 -12335423 + LTR1 LTR ERV1 418 689 -96 2323 109 0 3 chr4 171953551 171953864 -12334798 - AluSx SINE Alu 0 312 1 1328 223 38 10 chr4 171954470 171954815 -12333847 - MLT1A1 LTR MaLR 0 365 7 2384 74 0 3 chr4 171954840 171955149 -12333513 - AluY SINE Alu -3 308 1 2200 111 0 25 chr4 171955555 171955870 -12332792 + AluSg1 SINE Alu 1 307 -2 2257 96 3 0 chr4 171956525 171956816 -12331846 - AluSc SINE Alu -17 292 1 9673 98 9 8 chr4 171956947 171957069 -12331593 - L1P LINE L1 -2102 4044 3924 2152 125 3 0 chr4 171957069 171957373 -12331289 - AluSc SINE Alu -4 305 1 9673 98 9 8 chr4 171957373 171958666 -12329996 - L1P LINE L1 -2222 3924 2628 5593 72 60 2 chr4 171958666 171959998 -12328664 + L1PA7 LINE L1 4540 5952 -202 297 275 22 0 chr4 171959991 171960082 -12328580 - L1MC4 LINE L1 -1338 6704 6612 * 473 198 9 0 chr4 171960082 171960188 -12328474 + (TA)n Simple_repeat Simple_repeat 1 107 0 229 178 0 0 chr4 171960189 171960234 -12328428 - LTR66 LTR ERVL -172 438 394 350 174 12 58 chr4 171960240 171960412 -12328250 + (TA)n Simple_repeat Simple_repeat 1 164 0 278 274 0 0 chr4 171960450 171960534 -12328128 - AluY SINE Alu -192 109 26 394 277 94 64 chr4 171961297 171961499 -12327163 - MER63A DNA MER1_type 0 210 3 1677 195 88 32 chr4 171962017 171962392 -12326270 - MSTD LTR MaLR 0 396 1 23 78 0 0 chr4 171962502 171962553 -12326109 + AT_rich Low_complexity Low_complexity 1 51 0 858 174 42 32 chr4 171962739 171962929 -12325733 + MER3 DNA MER1_type 1 192 -17 654 188 65 41 chr4 171963181 171963426 -12325236 + pTR5 LTR ERV1 743 993 -1445 2254 178 2 17 chr4 171963542 171964064 -12324598 + L1 LINE L1 4331 4844 -1302 795 35 157 0 chr4 171964064 171964179 -12324483 - LTR12 LTR ERV1 0 714 582 3763 126 158 53 chr4 171964179 171964927 -12323735 - LTR12 LTR ERV1 0 826 1 710 239 0 44 chr4 171965007 171965279 -12323383 - pTR5 LTR ERV1 -1410 1028 769 3414 152 16 1 chr4 171965284 171966222 -12322440 + L1P5 LINE L1 4832 5781 -370 198 0 0 0 chr4 171966223 171966245 -12322417 + (TA)n Simple_repeat Simple_repeat 2 23 0 32 57 0 0 chr4 171966262 171966315 -12322347 + AT_rich Low_complexity Low_complexity 1 53 0 1114 193 26 7 chr4 171967218 171967685 -12320977 - MER34 LTR ERV1 -7 535 33 23 0 0 0 chr4 171967842 171967865 -12320797 + AT_rich Low_complexity Low_complexity 1 23 0 2340 101 3 0 chr4 171967959 171968304 -12320358 - pTR5 LTR ERV1 -2046 392 47 235 216 0 0 chr4 171968311 171968362 -12320300 - LTR30 LTR ERV1 -108 614 564 269 173 19 32 chr4 171968496 171968652 -12320010 + T-rich Low_complexity Low_complexity 2 155 0 353 250 79 33 chr4 171968701 171968853 -12319809 + MIR SINE MIR 103 261 -1 198 318 155 8 chr4 171969849 171969978 -12318684 - MIR3 SINE MIR -31 177 30 1514 122 17 17 chr4 171969997 171970234 -12318428 - AluSg/x SINE Alu 0 310 74 2071 158 6 3 chr4 171970538 171970899 -12317763 - L1MA7 LINE L1 -414 5877 5516 672 124 0 0 chr4 171970900 171971013 -12317649 + L1MA7 LINE L1 6177 6289 -2 234 316 147 37 chr4 171971439 171971575 -12317087 + MIR3 SINE MIR 2 152 -56 2195 89 0 46 chr4 171972780 171973106 -12315556 - AluY SINE Alu 0 311 1 906 266 86 11 chr4 171973308 171973657 -12315005 - L1ME3 LINE L1 -149 6013 5639 704 298 62 22 chr4 171974286 171974608 -12314054 + L2 LINE L2 2405 2739 -575 450 181 261 22 chr4 171974711 171974785 -12313877 - MER5B DNA MER1_type -6 172 117 195 42 0 0 chr4 171974785 171974809 -12313853 + (TG)n Simple_repeat Simple_repeat 1 24 0 1976 96 11 7 chr4 171974809 171975090 -12313572 - AluSp SINE Alu -31 282 1 450 181 261 22 chr4 171975090 171975152 -12313510 - MER5B DNA MER1_type -60 118 2 617 266 219 33 chr4 171975160 171975525 -12313137 + L2 LINE L2 2842 3274 -39 1842 143 35 3 chr4 171975694 171975980 -12312682 + AluSx SINE Alu 3 297 -15 1106 204 9 14 chr4 171976237 171976453 -12312209 - AluJb SINE Alu -11 301 87 285 323 45 45 chr4 171976884 171977017 -12311645 - MIR SINE MIR -106 156 24 220 254 99 0 chr4 171977456 171977527 -12311135 + MIR SINE MIR 183 260 -2 22 35 0 0 chr4 171978528 171978557 -12310105 + AT_rich Low_complexity Low_complexity 1 29 0 1784 145 60 0 chr4 171979900 171980183 -12308479 - AluSx SINE Alu -12 300 1 2317 94 35 0 chr4 171980335 171980676 -12307986 - LTR1 LTR ERV1 0 785 433 252 0 0 0 chr4 171981335 171981363 -12307299 + (TA)n Simple_repeat Simple_repeat 2 29 0 341 331 24 23 chr4 171984015 171984155 -12304507 + MER5B DNA MER1_type 1 152 -37 2199 174 66 14 chr4 171984222 171984660 -12304002 + LOR1b LTR ERV1 1 461 0 205 312 28 18 chr4 171984777 171984886 -12303776 + L2 LINE L2 3155 3264 -8 2394 128 14 3 chr4 171985801 171986161 -12302501 - THE1B LTR MaLR 0 364 1 685 277 41 80 chr4 171986220 171986305 -12302357 + MLT1I LTR MaLR 108 195 -214 2165 110 0 7 chr4 171986305 171986595 -12302067 + AluSg SINE Alu 15 302 -8 685 277 41 80 chr4 171986595 171986823 -12301839 + MLT1I LTR MaLR 195 409 0 1624 92 10 10 chr4 171987086 171988079 -12300583 - L1P3 LINE L1 -4977 1484 293 584 47 0 35 chr4 171988182 171988268 -12300394 - L1P3 LINE L1 -6362 99 17 * 5339 53 1 21 chr4 171988266 171988326 -12300336 + L1PA7 LINE L1 5421 5481 -673 2157 83 35 3 chr4 171988326 171988615 -12300047 + AluY SINE Alu 1 298 -13 5339 53 1 21 chr4 171988615 171989274 -12299388 + L1PA7 LINE L1 5481 6126 -28 31 26 0 0 chr4 171989299 171989337 -12299325 + AT_rich Low_complexity Low_complexity 1 38 0 196 325 24 0 chr4 171989434 171989517 -12299145 - L3 LINE CR1 -149 1428 1344 199 54 54 0 chr4 171989601 171989638 -12299024 + (TA)n Simple_repeat Simple_repeat 1 39 0 714 302 86 19 chr4 171989689 171990004 -12298658 - L3 LINE CR1 -278 1299 964 2026 139 0 20 chr4 171990336 171990639 -12298023 + AluJb SINE Alu 1 297 -15 24 77 0 0 chr4 171990739 171990791 -12297871 + AT_rich Low_complexity Low_complexity 1 52 0 304 201 58 50 chr4 171990801 171990940 -12297722 + L1ME3A LINE L1 5924 6063 -107 3750 92 9 18 chr4 171990972 171991359 -12297303 - LTR12 LTR ERV1 0 714 332 2615 39 0 3 chr4 171991359 171991664 -12296998 + AluY SINE Alu 1 304 -7 3750 92 9 18 chr4 171991664 171991829 -12296833 - LTR12 LTR ERV1 -382 332 167 339 260 16 16 chr4 171992006 171992129 -12296533 - THE1C LTR MaLR -252 123 1 2184 100 10 0 chr4 171992899 171993199 -12295463 - AluSq SINE Alu -10 303 1 988 301 112 78 chr4 171993860 171995297 -12293365 + L1MC/D LINE L1 3749 5234 -912 380 289 145 22 chr4 171995314 171995649 -12293013 + L1MC/D LINE L1 5267 5647 -570 1800 149 30 46 chr4 171995778 171996148 -12292514 - THE1B LTR MaLR 0 364 1 211 51 0 51 chr4 171996373 171996412 -12292250 + (TAAAA)n Simple_repeat Simple_repeat 5 41 0 21 36 0 0 chr4 171996509 171996537 -12292125 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 171997150 171997178 -12291484 + AT_rich Low_complexity Low_complexity 1 28 0 5849 107 1 21 chr4 171998692 171999639 -12289023 - pTR5 LTR ERV1 0 2438 6 340 183 7 120 chr4 171999615 171999757 -12288905 - pTR5 LTR ERV1 -1066 1372 1247 * 495 188 0 21 chr4 172000031 172000127 -12288535 - AluSc SINE Alu -215 94 1 1541 186 42 3 chr4 172000665 172000950 -12287712 - AluJb SINE Alu -16 296 1 1947 138 10 0 chr4 172001382 172001694 -12286968 + AluSx SINE Alu 1 312 0 659 159 0 15 chr4 172002565 172002697 -12285965 - L1MA4 LINE L1 0 6300 6171 212 218 92 92 chr4 172002952 172003039 -12285623 - L3b LINE CR1 -200 1383 1297 535 330 132 0 chr4 172003405 172003632 -12285030 + MIR SINE MIR 3 259 -3 2374 81 3 3 chr4 172003893 172004200 -12284462 - AluSq SINE Alu -6 307 1 1612 179 7 11 chr4 172004927 172005212 -12283450 - AluJo SINE Alu -15 297 14 671 78 0 0 chr4 172005685 172005775 -12282887 + 5S rRNA rRNA 1 90 -31 1929 137 7 7 chr4 172005789 172006089 -12282573 - AluSx SINE Alu -12 300 1 230 297 81 40 chr4 172007808 172007956 -12280706 + MIR3 SINE MIR 10 163 -45 192 195 0 142 chr4 172008776 172008853 -12279809 + L2 LINE L2 2470 2528 -786 2203 109 6 6 chr4 172008853 172009166 -12279496 + AluSq SINE Alu 1 313 0 192 195 0 142 chr4 172009166 172009201 -12279461 + L2 LINE L2 2528 2566 -748 586 243 0 0 chr4 172009294 172009405 -12279257 + L2 LINE L2 3198 3308 -5 573 144 0 0 chr4 172009407 172009511 -12279151 + (GGGGA)n Simple_repeat Simple_repeat 2 105 0 297 0 0 0 chr4 172009718 172009751 -12278911 + (CA)n Simple_repeat Simple_repeat 1 33 0 1769 159 49 26 chr4 172009756 172009840 -12278822 - MLT1B LTR MaLR -37 353 272 2393 52 13 3 chr4 172009840 172010146 -12278516 - AluY SINE Alu -2 309 1 1769 159 49 26 chr4 172010146 172010406 -12278256 - MLT1B LTR MaLR -118 272 1 2469 74 0 3 chr4 172011631 172011942 -12276720 - AluY SINE Alu -1 310 1 410 85 0 0 chr4 172012117 172012176 -12276486 - AluSc SINE Alu -14 297 239 1300 128 0 0 chr4 172012177 172012356 -12276306 - AluSc SINE Alu -130 179 1 399 327 101 0 chr4 172012374 172012533 -12276129 + MIR SINE MIR 82 256 -6 3436 161 60 107 chr4 172012732 172013684 -12274978 - MER21A LTR ERV1 -6 925 19 1399 195 60 40 chr4 172013827 172014207 -12274455 + LOR1b LTR ERV1 1 388 -73 351 0 0 0 chr4 172014237 172014276 -12274386 + (CA)n Simple_repeat Simple_repeat 2 40 0 216 160 42 34 chr4 172014302 172014421 -12274241 + (TA)n Simple_repeat Simple_repeat 2 121 0 280 207 0 17 chr4 172014435 172014493 -12274169 + MER63 DNA MER1_type 689 745 -316 4689 45 0 15 chr4 172014744 172015340 -12273322 + L1PA8 LINE L1 5586 6172 0 206 189 75 0 chr4 172015610 172015663 -12272999 + MIR SINE MIR 119 175 -87 647 285 44 20 chr4 172015701 172015951 -12272711 + MIR SINE MIR 2 262 0 2436 94 0 0 chr4 172016012 172016319 -12272343 - AluSx SINE Alu -5 307 1 550 81 0 0 chr4 172017005 172017079 -12271583 - MADE1 DNA Mariner -3 77 4 188 206 0 0 chr4 172017768 172017802 -12270860 + L2 LINE L2 3268 3301 -12 2186 93 21 0 chr4 172017819 172018109 -12270553 - AluSx SINE Alu -16 296 1 21 36 0 0 chr4 172018165 172018193 -12270469 + AT_rich Low_complexity Low_complexity 1 28 0 186 326 76 0 chr4 172018445 172018537 -12270125 + L2 LINE L2 3193 3291 -22 901 209 11 0 chr4 172018671 172018858 -12269804 - MLT2B1 LTR ERVL -331 189 1 498 279 61 68 chr4 172019232 172019673 -12268989 - MLT1J LTR MaLR -35 476 39 325 294 59 8 chr4 172019780 172019899 -12268763 - ERVL LTR ERVL -948 4816 4692 1787 334 72 33 chr4 172019912 172021492 -12267170 - ERVL LTR ERVL -1960 3804 2132 250 337 114 5 chr4 172021511 172021704 -12266958 - ERVL LTR ERVL -2980 2016 1803 623 294 35 10 chr4 172021918 172022119 -12266543 + MIR SINE MIR 57 262 0 311 298 19 29 chr4 172022632 172022736 -12265926 - L2 LINE L2 -185 3087 2985 202 343 91 37 chr4 172022962 172023204 -12265458 - L2 LINE L2 -637 2677 2423 435 192 10 48 chr4 172023411 172023515 -12265147 - Tigger7 DNA MER2_type 0 2587 2488 1332 171 81 0 chr4 172023517 172023751 -12264911 - Tigger7 DNA MER2_type -478 255 3 811 78 0 0 chr4 172023908 172024011 -12264651 - Alu SINE Alu -14 296 194 22 35 0 0 chr4 172025257 172025286 -12263376 + AT_rich Low_complexity Low_complexity 1 29 0 185 323 31 15 chr4 172026463 172026528 -12262134 - MIR SINE MIR -87 121 56 2496 157 39 48 chr4 172026742 172027437 -12261225 + pTR5 LTR ERV1 741 1429 -1009 1613 143 87 14 chr4 172027537 172027861 -12260801 - MER39B LTR ERV1 -271 382 28 5180 95 36 7 chr4 172027861 172028619 -12260043 + LTR17 LTR ERV1 1 780 0 1613 143 87 14 chr4 172028619 172028650 -12260012 - MER39B LTR ERV1 -625 28 1 198 344 91 91 chr4 172028710 172028995 -12259667 + L2 LINE L2 2976 3260 -12 523 24 35 35 chr4 172029302 172029387 -12259275 - L1PA4 LINE L1 0 6155 6071 920 61 9 0 chr4 172029399 172029514 -12259148 - AluSc SINE Alu -192 117 2 2164 147 0 3 chr4 172029514 172029820 -12258842 - AluSx SINE Alu -2 310 6 30 27 0 0 chr4 172030007 172030044 -12258618 + AT_rich Low_complexity Low_complexity 1 37 0 1551 177 4 12 chr4 172030044 172030298 -12258364 - AluJo SINE Alu -55 257 6 2080 123 7 13 chr4 172030555 172030864 -12257798 + AluSc SINE Alu 1 307 -2 308 276 136 35 chr4 172031088 172031287 -12257375 - L2 LINE L2 -399 2915 2697 528 291 73 15 chr4 172031293 172031554 -12257108 - L2 LINE L2 -522 2792 2517 847 169 156 4 chr4 172031561 172031798 -12256864 - MER69 DNA AcHobo -24 2502 2230 920 211 0 0 chr4 172031938 172032123 -12256539 - MER5A DNA MER1_type 0 189 5 458 240 40 13 chr4 172032535 172032685 -12255977 - L2 LINE L2 -789 2525 2372 21 0 0 0 chr4 172032691 172032712 -12255950 + AT_rich Low_complexity Low_complexity 1 21 0 2338 104 0 3 chr4 172032812 172033119 -12255543 - AluSg SINE Alu -4 306 1 2601 46 0 3 chr4 172033129 172033435 -12255227 - AluY SINE Alu -6 305 1 596 188 0 10 chr4 172033461 172033562 -12255100 + FLAM_A SINE Alu 2 101 -41 400 156 22 0 chr4 172033574 172033664 -12254998 + (TATATG)n Simple_repeat Simple_repeat 4 95 0 339 256 35 0 chr4 172033664 172033750 -12254912 + L1MC4 LINE L1 6614 6702 -1340 189 274 0 20 chr4 172033750 172033801 -12254861 - MER5B DNA MER1_type -128 50 1 5190 185 78 33 chr4 172033809 172035202 -12253460 + Charlie1a DNA MER1_type 1 1455 0 2077 121 37 0 chr4 172035765 172036063 -12252599 - AluSx SINE Alu -3 309 1 1090 238 52 11 chr4 172036178 172036464 -12252198 + MLT1A1 LTR MaLR 3 300 -65 207 0 0 0 chr4 172036576 172036599 -12252063 + (A)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr4 172036606 172036627 -12252035 + GC_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 172036772 172036797 -12251865 + GC_rich Low_complexity Low_complexity 1 25 0 28 48 0 0 chr4 172036847 172036889 -12251773 + GC_rich Low_complexity Low_complexity 1 42 0 306 0 0 0 chr4 172036889 172036923 -12251739 + (A)n Simple_repeat Simple_repeat 1 34 0 446 250 25 33 chr4 172036926 172037046 -12251616 + MER5B DNA MER1_type 60 178 0 2257 105 3 0 chr4 172037208 172037502 -12251160 - AluSx SINE Alu -17 295 1 1300 154 19 77 chr4 172037502 172037762 -12250900 - AluJb SINE Alu -67 245 1 2270 99 0 7 chr4 172038066 172038368 -12250294 + AluSc SINE Alu 1 300 -9 22 0 0 0 chr4 172039086 172039108 -12249554 + AT_rich Low_complexity Low_complexity 1 22 0 257 204 28 19 chr4 172039625 172039733 -12248929 + CT-rich Low_complexity Low_complexity 2 110 0 526 320 57 26 chr4 172039802 172040030 -12248632 - MIR SINE MIR -19 243 9 344 328 55 0 chr4 172040759 172040887 -12247775 + MIR SINE MIR 70 204 -58 1247 119 0 0 chr4 172041831 172042024 -12246638 - AluY SINE Alu 0 306 114 1666 108 9 115 chr4 172043831 172044154 -12244508 + AluSg1 SINE Alu 1 289 -20 343 284 45 85 chr4 172044178 172044379 -12244283 + MIR SINE MIR 46 238 -24 282 299 146 22 chr4 172045305 172045442 -12243220 + MIR SINE MIR 59 212 -50 215 317 49 56 chr4 172046804 172046946 -12241716 + L2 LINE L2 2910 3050 -222 606 153 27 0 chr4 172047089 172047200 -12241462 - LTR40b LTR ERVL 0 462 349 10654 139 80 38 chr4 172047493 172048425 -12240237 + Tigger1 DNA MER2_type 205 1096 -1322 2107 109 0 3 chr4 172048425 172048734 -12239928 - AluSx SINE Alu 0 308 1 10654 139 80 38 chr4 172048734 172049316 -12239346 + Tigger1 DNA MER2_type 1096 1652 -766 1793 149 10 14 chr4 172049316 172049605 -12239057 - AluSx SINE Alu -24 288 1 10654 139 80 38 chr4 172049605 172050212 -12238450 + Tigger1 DNA MER2_type 1652 2418 0 307 281 34 41 chr4 172051040 172051186 -12237476 - MER103 DNA DNA -2 164 20 248 177 32 0 chr4 172051701 172051763 -12236899 + (CATATA)n Simple_repeat Simple_repeat 2 65 0 356 325 30 41 chr4 172052075 172052244 -12236418 - MIR3 SINE MIR -21 187 21 425 258 14 44 chr4 172052268 172052491 -12236171 + LTR40b LTR ERVL 187 465 0 2483 48 0 0 chr4 172052589 172052901 -12235761 - LTR17 LTR ERV1 -454 326 15 1313 249 88 38 chr4 172052931 172052984 -12235678 - L1M4 LINE L1 -2576 3570 3521 1558 197 31 17 chr4 172052984 172053273 -12235389 + AluJo SINE Alu 1 293 -19 1313 249 88 38 chr4 172053273 172054066 -12234596 - L1M4 LINE L1 -2625 3521 2681 381 266 62 21 chr4 172054849 172055041 -12233621 + MLT1J LTR MaLR 311 510 -1 315 0 0 0 chr4 172055801 172055836 -12232826 + (CA)n Simple_repeat Simple_repeat 1 35 0 960 148 81 184 chr4 172057214 172057546 -12231116 + AluJo SINE Alu 1 298 -4 2401 79 0 16 chr4 172058128 172058432 -12230230 + AluSq SINE Alu 13 311 -2 572 246 95 32 chr4 172058445 172058730 -12229932 + L1M4 LINE L1 3631 3933 -2213 1316 207 106 62 chr4 172058820 172059303 -12229359 - MER21B LTR ERV1 -52 811 362 419 250 10 10 chr4 172059302 172059402 -12229260 - MER21B LTR ERV1 -637 226 127 * 391 261 37 66 chr4 172059502 172059609 -12229053 + L1M4 LINE L1 4077 4186 -1960 2093 124 3 0 chr4 172059609 172059899 -12228763 + AluSx SINE Alu 1 291 -21 391 261 37 66 chr4 172059899 172060063 -12228599 + L1M4 LINE L1 4186 4340 -1806 667 229 0 0 chr4 172060114 172060275 -12228387 + FLAM_C SINE Alu 1 161 0 2151 130 7 7 chr4 172060318 172060618 -12228044 + AluSx SINE Alu 3 302 -10 180 0 0 0 chr4 172060656 172060676 -12227986 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1673 174 94 142 chr4 172060723 172061478 -12227184 + LTR8A LTR ERV1 1 719 -8 844 270 33 0 chr4 172061493 172061708 -12226954 + MIR SINE MIR 41 262 0 43 0 0 0 chr4 172061752 172061795 -12226867 + AT_rich Low_complexity Low_complexity 1 43 0 22 56 0 0 chr4 172061868 172061904 -12226758 + AT_rich Low_complexity Low_complexity 1 36 0 329 287 45 42 chr4 172062020 172062309 -12226353 + L1M4 LINE L1 4532 4821 -1325 2118 102 0 60 chr4 172062454 172062809 -12225853 - AluSx SINE Alu 0 312 1 2057 214 8 39 chr4 172063427 172063947 -12224715 - MLT1D LTR MaLR 0 505 2 672 219 171 0 chr4 172063949 172064136 -12224526 - MER20 DNA MER1_type 0 219 1 503 240 137 20 chr4 172065733 172065879 -12222783 + MIR SINE MIR 40 202 -60 1835 154 0 17 chr4 172065891 172066184 -12222478 + AluJo SINE Alu 13 300 -12 197 279 13 38 chr4 172066187 172066266 -12222396 + MIR SINE MIR 186 262 0 222 352 55 8 chr4 172066930 172067058 -12221604 + L2 LINE L2 3134 3267 -5 6770 108 45 66 chr4 172067406 172068435 -12220227 + Tigger3b DNA MER2_type 1 1001 -2027 2431 73 0 3 chr4 172068435 172068738 -12219924 + AluY SINE Alu 1 302 -9 6770 108 45 66 chr4 172068738 172068965 -12219697 + Tigger3b DNA MER2_type 1001 1231 0 1750 81 9 0 chr4 172069487 172069710 -12218952 + AluSc SINE Alu 1 225 -84 1248 114 0 0 chr4 172069710 172069877 -12218785 + AluSg/x SINE Alu 141 307 -3 2096 124 0 13 chr4 172069932 172070231 -12218431 + AluSx SINE Alu 1 295 -17 1930 110 4 0 chr4 172070787 172071042 -12217620 + AluSq SINE Alu 1 256 -57 1701 230 100 30 chr4 172071212 172071681 -12216981 + MLT1F1 LTR MaLR 3 504 -63 2089 153 37 3 chr4 172071922 172072276 -12216386 - MER47A DNA MER2_type 0 366 1 188 351 41 90 chr4 172074423 172074615 -12214047 - L2 LINE L2 -73 3199 3020 2249 113 7 0 chr4 172074615 172074917 -12213745 + AluSp SINE Alu 1 304 -9 188 351 41 90 chr4 172074917 172074969 -12213693 - L2 LINE L2 -252 3020 2967 * 231 345 88 0 chr4 172074968 172075081 -12213581 - L2 LINE L2 -639 2675 2553 511 241 99 43 chr4 172075380 172075542 -12213120 - MIR SINE MIR -87 175 5 2471 51 27 0 chr4 172078017 172078311 -12210351 + AluY SINE Alu 1 302 -9 1553 134 144 7 chr4 172079173 172079471 -12209191 - MER44D DNA MER2_type 0 609 1 181 342 174 26 chr4 172079893 172080048 -12208614 - L2 LINE L2 -5 3267 3090 1999 118 47 0 chr4 172080814 172081111 -12207551 - AluSx SINE Alu -1 311 1 592 308 144 49 chr4 172081821 172082168 -12206494 + L2 LINE L2 2930 3309 -4 1303 127 5 5 chr4 172082680 172082885 -12205777 - L1PB1 LINE L1 -1 6150 5946 2367 50 40 7 chr4 172083688 172083988 -12204674 - AluY SINE Alu -1 310 1 35 41 0 0 chr4 172084642 172084691 -12203971 + AT_rich Low_complexity Low_complexity 1 49 0 372 344 54 36 chr4 172085055 172085334 -12203328 - L1MEd LINE L1 -5831 288 5 342 67 0 0 chr4 172088171 172088216 -12200446 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 3932 221 45 41 chr4 172088544 172090123 -12198539 - L1ME1 LINE L1 -287 5879 4308 1859 130 36 81 chr4 172090123 172090516 -12198146 + THE1C LTR MaLR 1 375 0 3932 221 45 41 chr4 172090516 172090652 -12198010 - L1ME1 LINE L1 -1858 4308 4174 1336 66 0 0 chr4 172090652 172090818 -12197844 - L1PA8 LINE L1 -15 6157 5992 3932 221 45 41 chr4 172090818 172091290 -12197372 - L1ME1 LINE L1 -1992 4174 3628 1122 257 145 23 chr4 172091466 172092198 -12196464 + L1MDa LINE L1 1272 2249 -4358 385 264 69 69 chr4 172092241 172092517 -12196145 + L1MDa LINE L1 2220 2495 -4112 1443 251 39 24 chr4 172092639 172093049 -12195613 - LTR40a LTR ERVL -103 416 1 1881 128 38 0 chr4 172093876 172094176 -12194486 + AluSc SINE Alu 4 313 0 324 322 203 11 chr4 172094531 172094817 -12193845 + L2 LINE L2 2973 3313 0 2264 138 33 57 chr4 172095051 172095472 -12193190 - MSTB LTR MaLR 0 426 16 2397 70 0 3 chr4 172095759 172096057 -12192605 + AluY SINE Alu 1 297 -14 1735 188 66 42 chr4 172096994 172097461 -12191201 - LTR2B LTR ERV1 0 490 1 2279 92 0 3 chr4 172097612 172097898 -12190764 + AluSx SINE Alu 1 287 -25 198 0 0 0 chr4 172097898 172097920 -12190742 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 24 32 0 0 chr4 172098410 172098441 -12190221 + AT_rich Low_complexity Low_complexity 1 31 0 2925 176 23 73 chr4 172098558 172099285 -12189377 - LTR8 LTR ERV1 0 691 1 255 193 67 92 chr4 172099533 172099652 -12189010 - MER4D LTR ERV1 -31 872 757 267 114 0 0 chr4 172101043 172101087 -12187575 + (TC)n Simple_repeat Simple_repeat 1 44 0 2372 61 3 3 chr4 172101522 172101816 -12186846 - AluY SINE Alu -17 294 1 2910 239 75 8 chr4 172102072 172102700 -12185962 + L1M4 LINE L1 2162 2883 -3263 2182 123 0 0 chr4 172102700 172103000 -12185662 - AluSx SINE Alu -12 300 1 2910 239 75 8 chr4 172103000 172103373 -12185289 + L1M4 LINE L1 2883 3230 -2916 264 160 0 0 chr4 172103378 172103428 -12185234 + L1M4 LINE L1 3193 3242 -2904 1220 186 98 3 chr4 172103429 172103725 -12184937 - MER33 DNA MER1_type 0 324 1 394 284 19 50 chr4 172103728 172103989 -12184673 + L1M4 LINE L1 3273 3525 -2621 313 234 43 17 chr4 172104003 172104165 -12184497 - L1ME LINE L1 -4695 2167 1561 34 72 0 0 chr4 172104231 172104300 -12184362 + AT_rich Low_complexity Low_complexity 1 69 0 2880 260 36 88 chr4 172104306 172105811 -12182851 - L1ME LINE L1 -4980 1443 17 255 150 0 0 chr4 172106210 172106250 -12182412 - MLT1K LTR MaLR -19 569 530 36 53 0 0 chr4 172107082 172107139 -12181523 + AT_rich Low_complexity Low_complexity 1 57 0 457 230 52 132 chr4 172109237 172109563 -12179099 + L2 LINE L2 3014 3313 0 1948 93 0 73 chr4 172110507 172110808 -12177854 + AluSc SINE Alu 1 279 -30 234 0 0 0 chr4 172110815 172110841 -12177821 + (CA)n Simple_repeat Simple_repeat 1 26 0 1212 234 9 0 chr4 172111105 172111336 -12177326 + MER8 DNA MER2_type 7 239 0 1201 170 58 0 chr4 172111878 172112101 -12176561 - Tigger2a DNA MER2_type -3 441 206 1026 161 6 0 chr4 172112101 172112263 -12176399 + FRAM SINE Alu 1 162 -14 1205 130 35 20 chr4 172112264 172112464 -12176198 - Tigger2a DNA MER2_type -231 203 1 314 142 123 113 chr4 172113014 172113120 -12175542 + MIR SINE MIR 47 153 -109 1713 170 77 6 chr4 172114854 172115165 -12173497 - ERVL LTR ERVL -3553 2211 1879 337 93 0 0 chr4 172115402 172115456 -12173206 + HY1 scRNA scRNA 58 111 -1 26 0 0 0 chr4 172116524 172116550 -12172112 + AT_rich Low_complexity Low_complexity 1 26 0 234 306 0 0 chr4 172116685 172116747 -12171915 + L2 LINE L2 3252 3313 0 21 36 0 0 chr4 172116791 172116819 -12171843 + AT_rich Low_complexity Low_complexity 1 28 0 2263 90 0 29 chr4 172117342 172117652 -12171010 - AluSx SINE Alu -11 301 1 389 318 87 81 chr4 172117785 172118118 -12170544 - L2 LINE L2 -19 3253 2919 474 69 23 46 chr4 172118256 172118343 -12170319 - L1PA6 LINE L1 0 6154 6070 320 294 47 0 chr4 172119322 172119407 -12169255 + MER58B DNA MER1_type 8 96 -245 286 191 118 0 chr4 172119424 172119492 -12169170 + MER58B DNA MER1_type 262 337 -4 2298 108 3 0 chr4 172120302 172120609 -12168053 - AluSx SINE Alu -4 308 1 626 203 8 0 chr4 172124173 172124296 -12164366 - FLAM_C SINE Alu -19 124 1 1896 147 48 23 chr4 172124296 172124692 -12163970 - L1MA8 LINE L1 -46 6245 5840 1829 154 3 3 chr4 172124802 172125088 -12163574 + AluJb SINE Alu 11 296 -16 4048 165 89 67 chr4 172125183 172126386 -12162276 + Tigger3b DNA MER2_type 1 1230 -1 691 235 157 9 chr4 172127948 172128165 -12160497 + MIR SINE MIR 1 249 -13 1152 246 137 30 chr4 172128221 172128736 -12159926 - MLT1F1 LTR MaLR -1 566 1 2545 40 0 47 chr4 172129269 172129591 -12159071 - AluY SINE Alu -4 307 1 1181 266 97 30 chr4 172129612 172130085 -12158577 - MLT1D LTR MaLR 0 505 1 237 132 0 0 chr4 172130090 172130128 -12158534 - L2 LINE L2 -973 2341 2304 1833 177 16 10 chr4 172131336 172131646 -12157016 + AluJo SINE Alu 1 312 0 2401 81 0 0 chr4 172132958 172133255 -12155407 + AluY SINE Alu 1 297 -14 2213 116 0 3 chr4 172134175 172134476 -12154186 - AluSx SINE Alu -12 300 1 335 241 64 7 chr4 172134666 172134807 -12153855 - L1ME4a LINE L1 0 6121 5973 427 155 12 0 chr4 172134951 172135035 -12153627 - AluSq SINE Alu -3 310 226 1173 97 0 19 chr4 172135035 172135190 -12153472 - AluSq SINE Alu -160 153 2 1291 173 114 13 chr4 172135687 172135994 -12152668 + MER2 DNA MER2_type 1 338 -7 1264 111 106 0 chr4 172137680 172137887 -12150775 - MER30 DNA MER1_type 0 230 2 423 203 313 6 chr4 172138075 172138238 -12150424 + MER58A DNA MER1_type 10 222 -2 426 218 158 30 chr4 172138513 172138678 -12149984 - MER5A DNA MER1_type 0 189 4 2046 113 13 0 chr4 172138714 172139014 -12149648 - AluSx SINE Alu -8 304 1 655 332 40 27 chr4 172141686 172142062 -12146600 - L2 LINE L2 -872 2442 2062 450 345 65 25 chr4 172142061 172142461 -12146201 + L2 LINE L2 1541 1956 -1358 * 2187 111 0 37 chr4 172142479 172142803 -12145859 - AluSq SINE Alu -1 312 1 3075 180 45 20 chr4 172142846 172143539 -12145123 + MER67C LTR ERV1 1 710 0 585 236 0 8 chr4 172144044 172144167 -12144495 + L2 LINE L2 3172 3293 -20 250 200 0 0 chr4 172144390 172144440 -12144222 - MLT1H1 LTR MaLR -8 534 485 1332 245 50 0 chr4 172144461 172144779 -12143883 - MER58B DNA MER1_type -2 339 6 363 116 0 2 chr4 172144927 172144993 -12143669 - Alu SINE Alu -5 296 241 326 147 29 15 chr4 172144991 172145059 -12143603 - MLT1H1 LTR MaLR -205 350 282 * 603 147 0 10 chr4 172146623 172146725 -12141937 - Tigger1 DNA MER2_type 0 2418 2318 889 226 0 18 chr4 172146725 172146893 -12141769 + AluJb SINE Alu 125 289 -23 467 96 24 12 chr4 172146893 172146976 -12141686 - Tigger1 DNA MER2_type -110 2308 2225 1191 196 0 18 chr4 172146976 172147200 -12141462 + AluJo SINE Alu 1 220 -92 760 164 0 0 chr4 172147254 172147370 -12141292 + FLAM_A SINE Alu 2 117 -16 13566 120 16 27 chr4 172147388 172149644 -12139018 - Tigger1 DNA MER2_type -186 2232 1 1748 180 26 22 chr4 172149656 172149967 -12138695 - AluJo SINE Alu 0 312 1 2216 83 7 17 chr4 172150192 172150492 -12138170 - AluSx SINE Alu 0 312 16 435 374 65 9 chr4 172151667 172151881 -12136781 - MIR SINE MIR -17 245 20 452 219 10 0 chr4 172151999 172152095 -12136567 - MER5A DNA MER1_type -80 109 13 504 314 39 0 chr4 172152497 172152701 -12135961 - MER102b DNA MER1_type 0 341 130 4812 197 43 39 chr4 172152702 172154924 -12133738 - L1MC1 LINE L1 -1 6332 4096 32 0 0 0 chr4 172154929 172154961 -12133701 + AT_rich Low_complexity Low_complexity 1 32 0 257 85 51 17 chr4 172154971 172155030 -12133632 + (TA)n Simple_repeat Simple_repeat 2 62 0 328 267 70 0 chr4 172155031 172155117 -12133545 + L1MC4 LINE L1 6612 6703 -1339 2054 147 0 0 chr4 172155122 172155415 -12133247 - AluSx SINE Alu -19 293 1 2081 143 0 3 chr4 172155560 172155860 -12132802 - AluSx SINE Alu -13 299 1 183 80 0 0 chr4 172156185 172156210 -12132452 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 611 210 58 6 chr4 172156214 172156442 -12132220 - L1MB4 LINE L1 -14 6157 5900 2295 88 7 13 chr4 172157045 172157351 -12131311 + AluSq SINE Alu 1 304 -9 316 256 105 75 chr4 172157814 172157947 -12130715 + MIR3 SINE MIR 69 205 -3 1729 189 42 46 chr4 172158713 172159168 -12129494 - LTR40a LTR ERVL 0 519 67 232 237 183 0 chr4 172159232 172159325 -12129337 + MIR SINE MIR 153 262 0 2208 162 26 16 chr4 172159412 172159838 -12128824 - L1MC1 LINE L1 -1 6332 5903 1652 170 10 39 chr4 172160034 172160345 -12128317 - AluJb SINE Alu -10 302 1 1912 109 7 14 chr4 172160412 172160696 -12127966 + AluY SINE Alu 1 282 -29 24 0 0 0 chr4 172160698 172160722 -12127940 + AT_rich Low_complexity Low_complexity 1 24 0 9223 191 48 13 chr4 172160822 172163929 -12124733 - L1PBa LINE L1 -1854 5008 1504 2207 130 3 0 chr4 172163929 172164237 -12124425 - AluSx SINE Alu -3 309 1 9223 191 48 13 chr4 172164237 172165791 -12122871 - L1PBa LINE L1 -5358 1504 6 731 201 41 67 chr4 172165965 172166034 -12122628 - MER5A DNA MER1_type 0 189 120 2075 116 3 3 chr4 172166034 172166328 -12122334 + AluSp SINE Alu 6 299 -14 731 201 41 67 chr4 172166328 172166452 -12122210 - MER5A DNA MER1_type -69 120 1 2369 72 0 3 chr4 172166801 172167094 -12121568 - AluY SINE Alu -19 292 1 419 261 0 46 chr4 172167312 172167442 -12121220 - MER63 DNA MER1_type -276 786 37 4480 118 14 16 chr4 172169386 172169926 -12118736 - L1PA13 LINE L1 -11 6152 5613 2390 74 13 3 chr4 172169926 172170225 -12118437 - AluSc SINE Alu -7 302 1 4480 118 14 16 chr4 172170225 172170416 -12118246 - L1PA13 LINE L1 -550 5613 5423 2153 87 0 11 chr4 172170630 172170963 -12117699 + AluY SINE Alu 1 330 0 236 149 0 0 chr4 172172216 172172263 -12116399 + Alu SINE Alu 254 300 0 422 228 47 0 chr4 172172383 172172510 -12116152 - MLT1I LTR MaLR -274 135 3 206 215 13 0 chr4 172172939 172173018 -12115644 + (TA)n Simple_repeat Simple_repeat 2 81 0 2305 89 3 0 chr4 172173393 172173695 -12114967 + AluY SINE Alu 3 305 -6 21 0 0 0 chr4 172173959 172173980 -12114682 + AT_rich Low_complexity Low_complexity 1 21 0 2049 131 0 29 chr4 172177806 172178119 -12110543 - AluSq SINE Alu -9 304 1 1554 176 28 39 chr4 172178517 172178721 -12109941 + L1MA8 LINE L1 5927 6127 -164 2151 78 3 42 chr4 172178721 172179027 -12109635 - AluSx SINE Alu -18 294 1 1554 176 28 39 chr4 172179027 172179185 -12109477 + L1MA8 LINE L1 6127 6285 -6 198 103 0 0 chr4 172179605 172179634 -12109028 + (CA)n Simple_repeat Simple_repeat 1 29 0 222 37 0 0 chr4 172179663 172179690 -12108972 + (CA)n Simple_repeat Simple_repeat 1 27 0 183 80 0 0 chr4 172179759 172179784 -12108878 + (CA)n Simple_repeat Simple_repeat 2 26 0 1898 148 15 6 chr4 172180250 172180588 -12108074 + MLT1A1 LTR MaLR 1 341 -24 952 159 258 12 chr4 172180625 172180892 -12107770 + MSTD LTR MaLR 65 396 0 21 57 0 0 chr4 172182515 172182550 -12106112 + AT_rich Low_complexity Low_complexity 1 35 0 403 282 27 0 chr4 172182772 172182882 -12105780 + Charlie2 DNA MER1_type 35 147 -2635 2252 88 0 7 chr4 172182916 172183201 -12105461 + AluSc SINE Alu 1 283 -26 250 304 144 24 chr4 172183206 172183331 -12105331 - MIR SINE MIR -112 150 11 21 0 0 0 chr4 172184269 172184290 -12104372 + AT_rich Low_complexity Low_complexity 1 21 0 592 243 33 33 chr4 172184723 172184875 -12103787 - MIR SINE MIR -55 207 56 285 161 0 161 chr4 172185325 172185404 -12103258 - L2 LINE L2 -191 3081 3016 322 192 0 41 chr4 172185404 172185477 -12103185 - MER5B DNA MER1_type -1 177 108 261 220 0 0 chr4 172185602 172185711 -12102951 + G-rich Low_complexity Low_complexity 1 109 0 2249 102 0 0 chr4 172186750 172187073 -12101589 - AluSq SINE Alu 0 323 1 185 100 33 0 chr4 172188049 172188079 -12100583 + MIR SINE MIR 220 250 -12 2137 101 14 0 chr4 172188273 172188571 -12100091 + AluSg SINE Alu 1 302 0 228 35 0 0 chr4 172189188 172189217 -12099445 + (TATG)n Simple_repeat Simple_repeat 2 30 0 1718 142 14 41 chr4 172189217 172189512 -12099150 - AluSx SINE Alu -25 287 1 3469 126 62 66 chr4 172189624 172190395 -12098267 + LTR1 LTR ERV1 18 785 0 834 130 0 36 chr4 172190659 172190797 -12097865 + FLAM_C SINE Alu 1 133 0 295 273 66 58 chr4 172190807 172190928 -12097734 + MIR SINE MIR 82 203 -59 192 97 0 0 chr4 172191343 172191374 -12097288 + (TG)n Simple_repeat Simple_repeat 2 32 0 285 313 15 8 chr4 172192690 172192821 -12095841 - L1ME3A LINE L1 -19 6151 6020 21 0 0 0 chr4 172192849 172192870 -12095792 + AT_rich Low_complexity Low_complexity 1 21 0 5191 139 11 19 chr4 172192870 172194032 -12094630 - L1PB4 LINE L1 -1 6155 5006 2975 108 65 82 chr4 172194035 172194201 -12094461 - L1MC1 LINE L1 -9 6324 6157 1748 87 13 0 chr4 172194201 172194431 -12094231 - AluY SINE Alu -17 294 62 2975 108 65 82 chr4 172194431 172194914 -12093748 - L1MC1 LINE L1 -176 6157 5686 1243 213 17 37 chr4 172194915 172195211 -12093451 + AluJo SINE Alu 3 292 -10 722 176 0 106 chr4 172195615 172195785 -12092877 - AluSg/x SINE Alu -28 284 133 768 169 97 7 chr4 172195967 172196121 -12092541 - FAM SINE Alu -7 168 1 1354 129 5 5 chr4 172196612 172196813 -12091849 + AluSx SINE Alu 1 201 -111 333 125 0 0 chr4 172196816 172196872 -12091790 + (TCTCC)n Simple_repeat Simple_repeat 1 56 0 460 198 0 0 chr4 172196909 172196995 -12091667 + AluSx SINE Alu 211 296 -13 301 314 19 9 chr4 172197837 172197942 -12090720 + CT-rich Low_complexity Low_complexity 5 110 0 939 115 0 14 chr4 172198876 172199015 -12089647 - FLAM_C SINE Alu -1 142 6 1965 132 17 0 chr4 172200853 172201140 -12087522 - AluJb SINE Alu -20 292 1 1791 261 59 27 chr4 172201324 172201742 -12086920 + L1ME LINE L1 163 566 -5639 2363 85 0 0 chr4 172201742 172202036 -12086626 + AluSc SINE Alu 1 294 -15 1791 261 59 27 chr4 172202036 172202144 -12086518 + L1ME LINE L1 566 669 -5536 2962 181 117 48 chr4 172202144 172202953 -12085709 + MER6 DNA MER2_type 1 865 0 1791 261 59 27 chr4 172202953 172203154 -12085508 + L1ME LINE L1 669 914 -5291 352 365 100 0 chr4 172203160 172203360 -12085302 + L1ME LINE L1 1734 1953 -4443 2255 214 48 77 chr4 172203451 172203500 -12085162 - L1MDb LINE L1 -4929 1477 1428 2308 89 0 0 chr4 172203500 172203793 -12084869 - AluSq SINE Alu -20 293 1 2255 214 48 77 chr4 172203793 172204592 -12084070 - L1MDb LINE L1 -4978 1428 660 225 371 10 0 chr4 172204899 172204996 -12083666 - MIR SINE MIR -6 256 159 265 331 41 35 chr4 172206364 172206509 -12082153 - L2 LINE L2 -341 2973 2828 381 239 25 119 chr4 172206765 172206966 -12081696 + MIR SINE MIR 33 214 -48 2047 137 0 0 chr4 172207713 172208006 -12080656 + AluJb SINE Alu 1 293 -19 313 269 138 75 chr4 172209347 172209615 -12079047 + L3 LINE CR1 1218 1502 -75 196 288 163 99 chr4 172210201 172210545 -12078117 - L2 LINE L2 -3 3269 2904 333 294 37 18 chr4 172210737 172210846 -12077816 + MER5A DNA MER1_type 79 189 0 371 220 9 216 chr4 172210984 172211211 -12077451 + MIR3 SINE MIR 11 190 -18 189 161 0 48 chr4 172211729 172211791 -12076871 + CT-rich Low_complexity Low_complexity 3 61 0 391 279 36 0 chr4 172213022 172213133 -12075529 + L2 LINE L2 3195 3309 -4 392 236 96 38 chr4 172216870 172217027 -12071635 + Charlie8 DNA MER1_type 33 198 -2219 27 0 0 0 chr4 172217474 172217501 -12071161 + AT_rich Low_complexity Low_complexity 1 27 0 2489 242 55 113 chr4 172217770 172219408 -12069254 - LTR28 LTR ERV1 0 1020 1 667 178 0 44 chr4 172219480 172219615 -12069047 - AluJo SINE Alu -178 134 6 21 0 0 0 chr4 172219632 172219653 -12069009 + AT_rich Low_complexity Low_complexity 1 21 0 533 253 32 39 chr4 172219662 172219816 -12068846 + L2 LINE L2 1315 1467 -1847 2288 60 0 3 chr4 172221451 172221733 -12066929 - AluY SINE Alu -30 281 1 302 257 0 0 chr4 172222082 172222156 -12066506 - MER33 DNA MER1_type -21 303 230 1201 96 0 6 chr4 172222165 172222322 -12066340 + AluSc SINE Alu 135 290 -19 767 179 118 5 chr4 172222326 172222521 -12066141 - MER33 DNA MER1_type -106 218 2 2079 136 7 3 chr4 172222578 172222887 -12065775 + AluSx SINE Alu 1 310 -2 5259 124 131 80 chr4 172223953 172225125 -12063537 + Tigger3b DNA MER2_type 1 1231 0 2888 178 152 120 chr4 172225554 172226114 -12062548 - L1MC3 LINE L1 -1 7784 7244 238 286 22 22 chr4 172226114 172226205 -12062457 - MLT1F1 LTR MaLR -442 125 35 2888 178 152 120 chr4 172226205 172226658 -12062004 - L1MC3 LINE L1 -541 7244 6645 240 35 0 0 chr4 172226658 172226687 -12061975 + (CA)n Simple_repeat Simple_repeat 2 30 0 267 31 0 0 chr4 172227240 172227272 -12061390 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 7269 39 26 10 chr4 172227272 172228312 -12060350 - L1PA5 LINE L1 -13 6141 5097 248 246 77 109 chr4 172228429 172228612 -12060050 - MLT1I LTR MaLR -127 282 106 369 280 102 6 chr4 172228761 172228918 -12059744 - MLT1J LTR MaLR -8 503 332 527 300 59 27 chr4 172228945 172229165 -12059497 - MLT1J LTR MaLR -249 262 36 2426 54 3 3 chr4 172229836 172230133 -12058529 + AluY SINE Alu 1 297 -14 219 88 0 0 chr4 172231080 172231114 -12057548 + (T)n Simple_repeat Simple_repeat 1 34 0 23 0 0 0 chr4 172231162 172231185 -12057477 + AT_rich Low_complexity Low_complexity 1 23 0 190 0 0 62 chr4 172232787 172232819 -12055843 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 2177 104 3 3 chr4 172232819 172233107 -12055555 - AluSq SINE Alu -25 288 1 24 0 0 0 chr4 172233509 172233533 -12055129 + AT_rich Low_complexity Low_complexity 1 24 0 224 274 0 0 chr4 172233553 172233604 -12055058 - L2 LINE L2 -3 3269 3219 1874 121 56 91 chr4 172234136 172234532 -12054130 - MSTD LTR MaLR -12 384 3 28 0 0 0 chr4 172234710 172234738 -12053924 + AT_rich Low_complexity Low_complexity 1 28 0 462 111 0 0 chr4 172234847 172234910 -12053752 - Cheshire DNA MER1_type 0 2420 2358 236 192 45 51 chr4 172235078 172235255 -12053407 + (TTGTG)n Simple_repeat Simple_repeat 5 180 0 451 108 0 48 chr4 172235435 172235518 -12053144 - AluY SINE Alu -196 115 37 398 241 0 0 chr4 172235519 172235598 -12053064 - MER58A DNA MER1_type -28 79 1 445 300 29 0 chr4 172236701 172236841 -12051821 - MLT1J2 LTR MaLR -286 164 21 462 257 21 84 chr4 172238264 172238501 -12050161 + L2 LINE L2 3048 3269 -44 192 214 0 0 chr4 172239379 172239435 -12049227 + (AATAG)n Simple_repeat Simple_repeat 2 57 0 345 269 97 15 chr4 172239612 172239746 -12048916 + L1MC4 LINE L1 6576 6720 -1322 1669 202 26 9 chr4 172239755 172240096 -12048566 + MER7A DNA MER2_type 2 346 0 262 296 79 44 chr4 172240468 172240671 -12047991 - MIR SINE MIR -2 260 51 216 333 70 51 chr4 172241353 172241509 -12047153 + MIR SINE MIR 54 212 -50 299 182 18 0 chr4 172242815 172242870 -12045792 + U7 snRNA snRNA 2 57 -6 2264 103 0 3 chr4 172243163 172243473 -12045189 + AluSq SINE Alu 1 309 -4 27 29 0 0 chr4 172243872 172243906 -12044756 + AT_rich Low_complexity Low_complexity 1 34 0 291 294 79 32 chr4 172246534 172246660 -12042002 + MLT1I LTR MaLR 109 240 -169 237 295 12 11 chr4 172246685 172246780 -12041882 + MLT1J1 LTR MaLR 318 399 -10 621 259 161 37 chr4 172247743 172248171 -12040491 + L1ME4a LINE L1 5522 6002 -119 312 329 56 69 chr4 172248398 172248702 -12039960 + L2 LINE L2 2968 3267 -5 21 0 0 0 chr4 172249307 172249328 -12039334 + AT_rich Low_complexity Low_complexity 1 21 0 735 48 40 65 chr4 172250405 172250529 -12038133 - L1PA14 LINE L1 -4 6157 6037 32 0 0 0 chr4 172251790 172251822 -12036840 + AT_rich Low_complexity Low_complexity 1 32 0 2049 136 0 13 chr4 172252760 172253069 -12035593 - AluSx SINE Alu -7 305 1 661 150 28 2 chr4 172253811 172254057 -12034605 + AluSx SINE Alu 1 302 -8 2712 13 3 6 chr4 172255059 172255370 -12033292 + AluYb8 SINE Alu 1 310 -8 204 184 0 0 chr4 172255698 172255747 -12032915 + (CA)n Simple_repeat Simple_repeat 2 50 0 1239 218 112 28 chr4 172255812 172256239 -12032423 + MER31B LTR ERV1 2 464 -2 1391 252 86 25 chr4 172257967 172258523 -12030139 - MLT1G LTR MaLR 0 590 1 2750 160 6 22 chr4 172258824 172259318 -12029344 - MER66B LTR ERV1 0 486 1 631 324 123 33 chr4 172259637 172259756 -12028906 + L2 LINE L2 2880 2987 -326 2129 86 3 48 chr4 172259756 172260071 -12028591 - AluY SINE Alu -10 301 1 631 324 123 33 chr4 172260071 172260349 -12028313 + L2 LINE L2 2987 3313 0 1590 152 15 67 chr4 172261103 172261445 -12027217 - THE1B LTR MaLR 0 364 41 2988 142 34 40 chr4 172261549 172262018 -12026644 - Tigger1 DNA MER2_type -1893 525 58 932 212 0 0 chr4 172262018 172262183 -12026479 + FRAM SINE Alu 2 166 0 2988 142 34 40 chr4 172262183 172262240 -12026422 - Tigger1 DNA MER2_type -2360 58 2 788 255 53 112 chr4 172262254 172262454 -12026208 - MLT1J LTR MaLR -13 498 288 1662 207 25 3 chr4 172262454 172262811 -12025851 + MLT1A1 LTR MaLR 1 365 0 788 255 53 112 chr4 172262811 172263139 -12025523 - MLT1J LTR MaLR -223 288 1 216 297 9 126 chr4 172264135 172264186 -12024476 - MIR SINE MIR -65 143 110 1247 182 91 57 chr4 172264186 172264482 -12024180 + AluJo SINE Alu 1 306 -6 216 297 9 126 chr4 172264482 172264541 -12024121 - MIR SINE MIR -98 110 46 2311 103 3 0 chr4 172266273 172266573 -12022089 + AluSc SINE Alu 3 303 -6 1787 195 27 16 chr4 172267439 172267809 -12020853 - THE1C LTR MaLR -1 374 1 2928 193 22 77 chr4 172267986 172268175 -12020487 - Cheshire DNA MER1_type -1 2419 2221 1616 191 6 32 chr4 172268175 172268490 -12020172 + AluJo SINE Alu 6 312 0 2928 193 22 77 chr4 172268490 172269039 -12019623 - Cheshire DNA MER1_type -199 2221 1732 2023 161 0 7 chr4 172269039 172269349 -12019313 + AluSx SINE Alu 5 312 0 2928 193 22 77 chr4 172269349 172269469 -12019193 - Cheshire DNA MER1_type -688 1732 1607 2210 96 7 3 chr4 172269516 172269808 -12018854 + AluSp SINE Alu 1 293 -20 369 313 167 7 chr4 172269891 172270035 -12018627 + MIR SINE MIR 26 192 -70 2016 163 103 133 chr4 172270297 172271148 -12017514 - LTR1B LTR ERV1 0 826 1 1898 149 7 0 chr4 172271162 172271466 -12017196 - AluSx SINE Alu 0 306 1 1933 188 0 0 chr4 172272124 172272433 -12016229 + AluJb SINE Alu 1 309 -3 191 136 45 0 chr4 172272464 172272508 -12016154 + T-rich Low_complexity Low_complexity 5 50 0 220 143 0 82 chr4 172272538 172272587 -12016075 + L3b LINE CR1 1539 1583 0 1869 125 34 3 chr4 172273146 172273443 -12015219 - AluSg1 SINE Alu -3 306 1 240 221 29 96 chr4 172273520 172273563 -12015099 + L2 LINE L2 3217 3261 -52 4369 163 25 13 chr4 172273563 172274337 -12014325 - LTR39 LTR ERV1 0 783 1 240 221 29 96 chr4 172274337 172274397 -12014265 + L2 LINE L2 3261 3313 0 270 306 73 16 chr4 172274424 172274548 -12014114 - MIR SINE MIR -112 150 20 411 107 66 8 chr4 172275587 172275708 -12012954 + (TA)n Simple_repeat Simple_repeat 2 129 0 297 355 41 0 chr4 172276037 172276158 -12012504 + L2 LINE L2 3147 3272 0 685 204 74 11 chr4 172276205 172276381 -12012281 + MER58C DNA MER1_type 26 212 -3 448 262 20 33 chr4 172276464 172276738 -12011924 + MLT1L LTR MaLR 4 308 -307 2307 163 13 0 chr4 172276757 172277155 -12011507 + MER57A LTR ERV1 1 403 0 252 201 58 149 chr4 172277326 172277500 -12011162 - LTR28 LTR ERV1 -15 1005 848 830 221 93 67 chr4 172277507 172277982 -12010680 - LTR1B LTR ERV1 -328 498 32 4382 127 36 5 chr4 172278014 172278682 -12009980 + LTR8 LTR ERV1 3 691 0 2335 188 38 18 chr4 172279055 172279628 -12009034 - LTR24B LTR ERV1 -2 574 1 305 319 30 36 chr4 172280402 172280568 -12008094 - MIR SINE MIR -62 200 36 1449 255 52 36 chr4 172282138 172282227 -12006435 + L1M4 LINE L1 4077 4163 -1983 1151 125 6 0 chr4 172282227 172282403 -12006259 + L1PA8 LINE L1 5981 6157 -15 1449 255 52 36 chr4 172282403 172282539 -12006123 + L1M4 LINE L1 4163 4295 -1851 1831 129 35 84 chr4 172282539 172282933 -12005729 - THE1C LTR MaLR 0 375 1 1449 255 52 36 chr4 172282933 172283399 -12005263 + L1M4 LINE L1 4295 4780 -1366 327 292 77 69 chr4 172283844 172284234 -12004428 - L1M2 LINE L1 -5642 1207 815 22 88 0 0 chr4 172284300 172284357 -12004305 + GC_rich Low_complexity Low_complexity 1 57 0 27 49 0 0 chr4 172284453 172284494 -12004168 + GC_rich Low_complexity Low_complexity 1 41 0 357 273 69 71 chr4 172284858 172285244 -12003418 + L2 LINE L2 2687 3059 -213 292 202 11 34 chr4 172285485 172285574 -12003088 + (TA)n Simple_repeat Simple_repeat 2 88 0 302 358 37 9 chr4 172286066 172286175 -12002487 - L2 LINE L2 0 3313 3202 542 290 25 0 chr4 172286560 172286722 -12001940 + MIR SINE MIR 53 218 -44 1822 164 7 0 chr4 172287060 172287364 -12001298 + AluSx SINE Alu 1 306 0 1647 180 103 133 chr4 172287378 172288229 -12000433 + LTR1B LTR ERV1 1 826 0 1105 209 60 55 chr4 172288474 172288875 -11999787 - L1ME2 LINE L1 -91 6073 5671 790 102 87 0 chr4 172288956 172289083 -11999579 + L1PA10 LINE L1 6027 6164 -4 475 269 21 0 chr4 172289133 172289274 -11999388 - L1ME2 LINE L1 -464 5700 5557 1719 220 19 52 chr4 172289307 172289784 -11998878 + MLT2B1 LTR ERVL 1 461 -59 451 251 2 9 chr4 172289853 172290000 -11998662 - L1ME2 LINE L1 -691 5473 5327 1961 136 85 0 chr4 172290438 172290754 -11997908 - MER61A LTR ERV1 0 343 1 1175 273 104 54 chr4 172291647 172292538 -11996124 - L1MC4 LINE L1 -2 8040 7105 197 32 0 32 chr4 172292548 172292579 -11996083 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1355 207 56 0 chr4 172292695 172292980 -11995682 - AluJo SINE Alu -11 301 1 327 264 104 19 chr4 172293395 172293501 -11995161 - L1MC4 LINE L1 -1339 6703 6589 9260 164 17 76 chr4 172294286 172296710 -11991952 + L1PA13 LINE L1 3661 6017 -146 1592 110 0 0 chr4 172296710 172296919 -11991743 + AluSg/x SINE Alu 77 285 -27 9260 164 17 76 chr4 172296919 172297053 -11991609 + L1PA13 LINE L1 6017 6157 -6 2287 129 0 0 chr4 172297053 172297364 -11991298 + AluSx SINE Alu 1 311 -1 23 33 0 0 chr4 172298870 172298900 -11989762 + AT_rich Low_complexity Low_complexity 1 30 0 1075 136 0 0 chr4 172299531 172299707 -11988955 - L1P LINE L1 -1828 4318 4143 1063 210 53 33 chr4 172300335 172300689 -11987973 - MSTD LTR MaLR 0 396 1 1650 198 17 7 chr4 172301342 172301640 -11987022 + AluJo SINE Alu 1 301 -11 902 236 19 10 chr4 172301658 172301866 -11986796 - MIR SINE MIR 0 262 53 312 349 37 9 chr4 172302251 172302360 -11986302 + L2 LINE L2 3202 3313 0 292 202 11 34 chr4 172302850 172302939 -11985723 + (TA)n Simple_repeat Simple_repeat 1 87 0 395 243 57 119 chr4 172303180 172303566 -11985096 - L2 LINE L2 -213 3059 2687 878 127 0 15 chr4 172305344 172305478 -11983184 + FLAM_C SINE Alu 1 132 -1 184 233 167 33 chr4 172305664 172305754 -11982908 - L2 LINE L2 -13 3300 3199 391 313 80 13 chr4 172305998 172306148 -11982514 - MIR SINE MIR -32 230 71 1958 134 9 34 chr4 172306393 172306713 -11981949 + AluSx SINE Alu 1 312 0 192 135 0 0 chr4 172306799 172306836 -11981826 + (T)n Simple_repeat Simple_repeat 1 37 0 2232 100 3 0 chr4 172306845 172307154 -11981508 + AluSx SINE Alu 1 310 -2 1872 143 3 10 chr4 172309305 172309599 -11979063 - AluJb SINE Alu -20 292 1 329 297 97 27 chr4 172309835 172310486 -11978176 - L1ME3 LINE L1 -282 5880 5192 215 292 83 25 chr4 172310490 172310610 -11978052 + L2 LINE L2 2944 3070 -202 2442 91 0 3 chr4 172310974 172311282 -11977380 - AluSc SINE Alu -2 307 1 370 370 45 0 chr4 172311690 172311844 -11976818 - MIR3 SINE MIR -12 196 36 255 308 0 0 chr4 172312206 172312271 -11976391 - L2 LINE L2 -2 3270 3206 2176 105 3 0 chr4 172312681 172312977 -11975685 + AluY SINE Alu 1 297 -14 282 43 0 8 chr4 172313066 172313110 -11975552 - MLT2C2 LTR ERVL -8 507 404 1428 222 16 19 chr4 172313160 172313530 -11975132 + MLT1A2 LTR MaLR 1 369 -5 306 0 0 0 chr4 172313530 172313564 -11975098 + (CA)n Simple_repeat Simple_repeat 2 35 0 666 279 6 0 chr4 172313565 172313744 -11974918 - MLT2C2 LTR ERVL -63 401 222 1113 191 13 44 chr4 172313975 172314200 -11974462 + AluJo SINE Alu 1 218 -94 29 28 0 0 chr4 172314293 172314329 -11974333 + AT_rich Low_complexity Low_complexity 1 36 0 30 27 0 0 chr4 172315485 172315522 -11973140 + AT_rich Low_complexity Low_complexity 1 37 0 1668 180 6 40 chr4 172315522 172315845 -11972817 - AluJo SINE Alu 0 312 1 787 295 76 39 chr4 172317081 172317566 -11971096 - MLT1K LTR MaLR -2 586 84 1998 229 46 6 chr4 172317569 172318068 -11970594 + LTR53 LTR ERVL 1 519 0 385 199 61 46 chr4 172318354 172318485 -11970177 - MER103 DNA DNA -24 142 10 25 31 0 0 chr4 172318580 172318612 -11970050 + AT_rich Low_complexity Low_complexity 1 32 0 2945 6 0 0 chr4 172318689 172319007 -11969655 + AluYb8 SINE Alu 1 318 0 22 35 0 0 chr4 172319867 172319896 -11968766 + AT_rich Low_complexity Low_complexity 1 29 0 1808 141 35 17 chr4 172320062 172320392 -11968270 - AluSx SINE Alu 0 312 3 1808 183 3 7 chr4 172320776 172321071 -11967591 - AluJo SINE Alu -17 295 2 240 149 0 0 chr4 172321137 172321184 -11967478 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 1546 223 88 0 chr4 172321185 172321561 -11967101 - MLT1D LTR MaLR -7 498 90 306 229 188 0 chr4 172321622 172321718 -11966944 - MLT1D LTR MaLR -390 115 2 223 227 0 30 chr4 172321718 172321784 -11966878 + (TATATG)n Simple_repeat Simple_repeat 3 66 0 225 269 33 174 chr4 172322117 172322359 -11966303 - L2 LINE L2 -80 3192 2985 254 379 113 21 chr4 172322611 172323047 -11965615 - L2 LINE L2 -188 3084 2521 191 371 0 0 chr4 172323046 172323108 -11965554 - L2 LINE L2 -16 3297 3236 * 29 0 0 0 chr4 172323272 172323301 -11965361 + AT_rich Low_complexity Low_complexity 1 29 0 2456 31 0 10 chr4 172323301 172323590 -11965072 - AluY SINE Alu -25 286 1 256 133 33 17 chr4 172325731 172325791 -11962871 + GA-rich Low_complexity Low_complexity 5 65 0 873 185 42 42 chr4 172326088 172326326 -11962336 - MER39 LTR ERV1 0 707 470 1728 97 63 52 chr4 172326332 172326600 -11962062 - AluSx SINE Alu -11 301 31 3857 117 105 82 chr4 172326600 172327939 -11960723 + pTR5 LTR ERV1 743 2438 0 437 254 183 0 chr4 172327950 172328119 -11960543 - MER39B LTR ERV1 -193 460 261 2162 108 0 17 chr4 172328119 172328414 -11960248 - AluSx SINE Alu 0 312 23 819 238 0 0 chr4 172328419 172328583 -11960079 - FRAM SINE Alu 0 166 3 1226 162 77 0 chr4 172328644 172328891 -11959771 - MER39B LTR ERV1 -387 266 1 297 0 0 0 chr4 172329801 172329834 -11958828 + (TG)n Simple_repeat Simple_repeat 2 34 0 2110 125 0 7 chr4 172329834 172330121 -11958541 - AluSx SINE Alu -27 285 1 286 311 59 25 chr4 172331164 172331283 -11957379 - MIR3 SINE MIR -39 169 47 21 36 0 0 chr4 172331425 172331453 -11957209 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 172331976 172331999 -11956663 + AT_rich Low_complexity Low_complexity 1 23 0 358 289 10 10 chr4 172332643 172332747 -11955915 + MIR SINE MIR 5 108 -154 180 0 0 0 chr4 172333120 172333140 -11955522 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3289 219 74 28 chr4 172333154 172334220 -11954442 - L1MC4a LINE L1 0 7808 6694 2143 185 55 2 chr4 172334607 172335045 -11953617 + LOR1b LTR ERV1 1 461 0 428 191 11 0 chr4 172335106 172335200 -11953462 + CT-rich Low_complexity Low_complexity 3 97 0 1433 195 12 27 chr4 172335490 172335823 -11952839 - MER4D LTR ERV1 -8 895 568 2250 90 0 7 chr4 172335825 172336114 -11952548 - AluSc SINE Alu -22 287 1 1395 172 25 11 chr4 172336168 172336447 -11952215 - MER49 LTR ERV1 -638 285 3 1029 212 66 58 chr4 172337137 172337729 -11950933 - LTR48 LTR ERV1 -1 786 1 356 254 146 48 chr4 172337740 172338095 -11950567 - Charlie7 DNA MER1_type -66 2546 2123 1641 194 30 17 chr4 172338095 172338394 -11950268 + AluJo SINE Alu 1 303 -9 356 254 146 48 chr4 172338394 172338557 -11950105 - Charlie7 DNA MER1_type -489 2123 1977 615 138 0 11 chr4 172338747 172338841 -11949821 + AluJo SINE Alu 1 93 -219 1143 170 16 0 chr4 172338959 172339187 -11949475 + AluJo SINE Alu 89 319 0 1126 259 79 83 chr4 172339202 172339598 -11949064 - Charlie7 DNA MER1_type -825 1787 1391 2109 106 14 0 chr4 172339598 172339890 -11948772 + AluSx SINE Alu 1 296 -16 1126 259 79 83 chr4 172339890 172340391 -11948271 - Charlie7 DNA MER1_type -1221 1391 894 264 304 62 36 chr4 172341025 172341219 -11947443 - L2 LINE L2 -3 3310 3112 24 0 0 0 chr4 172341741 172341765 -11946897 + AT_rich Low_complexity Low_complexity 1 24 0 457 312 0 8 chr4 172344317 172344442 -11944220 + L1PA13 LINE L1 1285 1408 -5379 * 4762 162 19 5 chr4 172344438 172346077 -11942585 + L1PA15 LINE L1 4262 5919 -246 1192 144 0 0 chr4 172346085 172346273 -11942389 + L1PA15 LINE L1 5978 6165 0 273 320 10 19 chr4 172347156 172347259 -11941403 - MIR SINE MIR -13 249 148 763 216 20 70 chr4 172347513 172347584 -11941078 + MIR SINE MIR 2 75 -187 2308 96 7 0 chr4 172347584 172347885 -11940777 - AluSq SINE Alu -10 303 1 763 216 20 70 chr4 172347885 172348012 -11940650 + MIR SINE MIR 75 190 -72 26 0 0 0 chr4 172348323 172348349 -11940313 + AT_rich Low_complexity Low_complexity 1 26 0 1865 146 4 4 chr4 172348351 172348619 -11940043 + AluJb SINE Alu 4 271 -41 279 264 33 22 chr4 172348730 172348821 -11939841 + L3 LINE CR1 942 1033 -544 1993 179 0 0 chr4 172348849 172349156 -11939506 - AluJb SINE Alu -3 309 3 308 237 29 101 chr4 172349196 172349335 -11939327 + MER5A DNA MER1_type 60 188 -1 199 318 30 0 chr4 172349434 172349500 -11939162 + L3 LINE CR1 1143 1210 -367 322 289 10 0 chr4 172349548 172349652 -11939010 - MIR SINE MIR -34 228 124 259 308 96 10 chr4 172350014 172350118 -11938544 + MIR SINE MIR 34 146 -116 364 143 43 0 chr4 172350121 172350191 -11938471 + LOR1b LTR ERV1 1 73 -388 439 112 163 31 chr4 172350193 172350291 -11938371 - FRAM SINE Alu -13 163 53 1278 221 58 17 chr4 172350293 172350641 -11938021 + LOR1b LTR ERV1 75 436 -25 410 136 0 0 chr4 172350641 172350700 -11937962 - AluS SINE Alu -259 59 1 800 263 0 6 chr4 172352381 172352560 -11936102 + MER58A DNA MER1_type 11 188 -36 182 250 25 75 chr4 172353018 172353098 -11935564 - MIR SINE MIR -123 139 64 1181 238 99 50 chr4 172353781 172354223 -11934439 + MLT2B1 LTR ERVL 1 471 -49 455 0 18 0 chr4 172354223 172354278 -11934384 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 1181 238 99 50 chr4 172354278 172354331 -11934331 + MLT2B1 LTR ERVL 471 520 0 503 157 0 0 chr4 172354778 172354861 -11933801 + MSTA LTR MaLR 1 83 -345 3010 86 37 7 chr4 172354863 172355292 -11933370 + MLT2A1 LTR ERVL 3 444 0 6821 124 19 10 chr4 172355298 172357070 -11931592 + L1MA1 LINE L1 4506 6302 0 1670 240 70 39 chr4 172357127 172358079 -11930583 + L1M4b LINE L1 1312 2296 -4663 1613 142 119 11 chr4 172358686 172358947 -11929715 - AluSg SINE Alu -21 289 1 205 302 129 9 chr4 172359735 172359851 -11928811 - MIR SINE MIR -10 252 123 367 266 71 9 chr4 172359963 172360076 -11928586 + MER5A DNA MER1_type 46 165 -24 234 308 128 30 chr4 172360301 172360397 -11928265 - MER5A DNA MER1_type -3 186 72 2095 137 0 3 chr4 172360397 172360703 -11927959 - AluSx SINE Alu -7 305 1 234 308 128 30 chr4 172360703 172360739 -11927923 - MER5A DNA MER1_type -117 72 41 4064 119 101 110 chr4 172360946 172362362 -11926300 + pTR5 LTR ERV1 743 2438 0 1642 210 33 11 chr4 172362644 172363090 -11925572 - LTR56 LTR ERV1 0 437 9 203 77 0 51 chr4 172365269 172365308 -11923354 + (GGGA)n Simple_repeat Simple_repeat 2 38 0 2779 7 0 0 chr4 172365893 172366195 -11922467 + AluYa5 SINE Alu 1 302 -9 2105 109 0 0 chr4 172366698 172366972 -11921690 - AluSx SINE Alu -18 294 21 306 258 34 22 chr4 172367915 172368004 -11920658 - L2 LINE L2 0 3272 3183 2326 106 3 0 chr4 172368146 172368447 -11920215 - AluSq SINE Alu -11 302 1 767 259 0 5 chr4 172368458 172368655 -11920007 - MER105 DNA DNA -3 201 6 859 235 80 0 chr4 172368729 172368929 -11919733 - MIR SINE MIR -20 242 27 847 251 34 66 chr4 172369004 172369443 -11919219 + LTR40c LTR ERVL 25 449 -16 1212 77 6 12 chr4 172369665 172369851 -11918811 + (TTTC)n Simple_repeat Simple_repeat 1 184 0 212 86 29 0 chr4 172369844 172369879 -11918783 + (TTCCC)n Simple_repeat Simple_repeat 4 39 0 257 383 62 5 chr4 172371473 172371666 -11916996 - L2 LINE L2 -475 2839 2636 21 0 0 0 chr4 172372064 172372085 -11916577 + AT_rich Low_complexity Low_complexity 1 21 0 711 129 50 90 chr4 172373069 172373270 -11915392 - 7SK RNA RNA 0 193 1 438 352 82 69 chr4 172374017 172374400 -11914262 + L2 LINE L2 2358 2751 -563 231 36 0 0 chr4 172374400 172374428 -11914234 + (TG)n Simple_repeat Simple_repeat 1 28 0 438 352 82 69 chr4 172374428 172374569 -11914093 + L2 LINE L2 2751 2889 -425 876 155 15 9 chr4 172374607 172374802 -11913860 - MER2 DNA MER2_type -9 336 63 429 238 82 16 chr4 172374805 172374927 -11913735 + L2 LINE L2 3140 3269 -3 1462 266 88 80 chr4 172374958 172376162 -11912500 - L2 LINE L2 -1 3312 2107 431 291 29 44 chr4 172377265 172377471 -11911191 + MIR SINE MIR 60 262 0 372 273 0 37 chr4 172377592 172377610 -11911052 - L1MA10 LINE L1 0 6334 6317 1508 218 49 53 chr4 172377610 172377669 -11910993 - L1ME2 LINE L1 -9 6155 6097 1232 211 80 48 chr4 172377669 172378020 -11910642 - MLT1A1 LTR MaLR 0 365 4 1508 218 49 53 chr4 172378020 172378447 -11910215 - L1ME2 LINE L1 -67 6097 5671 794 102 87 0 chr4 172378528 172378655 -11910007 + L1PA10 LINE L1 6027 6164 -4 524 269 21 0 chr4 172378705 172378846 -11909816 - L1ME2 LINE L1 -464 5700 5557 2002 212 19 50 chr4 172378879 172379355 -11909307 + MLT2B1 LTR ERVL 1 461 -59 1252 256 98 14 chr4 172379384 172380093 -11908569 - L1P4 LINE L1 -642 5521 4738 * 1488 255 37 95 chr4 172380092 172380525 -11908137 - L1ME2 LINE L1 -1801 4345 3888 2349 90 0 0 chr4 172380525 172380824 -11907838 + AluSq SINE Alu 1 299 -14 1488 255 37 95 chr4 172380824 172381112 -11907550 - L1ME2 LINE L1 -2258 3888 3585 1750 193 0 3 chr4 172381112 172381417 -11907245 - AluJo SINE Alu -4 308 5 1488 255 37 95 chr4 172381417 172381525 -11907137 - L1ME2 LINE L1 -2561 3585 3472 1588 184 48 10 chr4 172381525 172381819 -11906843 + AluJo SINE Alu 7 311 -1 1488 255 37 95 chr4 172381819 172382153 -11906509 - L1ME2 LINE L1 -2674 3472 3261 510 88 75 0 chr4 172382160 172382240 -11906422 - L1PA16 LINE L1 -9 6157 6072 466 197 8 68 chr4 172382240 172382357 -11906305 + L1PA16 LINE L1 5970 6079 -87 335 178 0 8 chr4 172382406 172382469 -11906193 - Alu SINE Alu -250 53 1 556 208 6 57 chr4 172382471 172382630 -11906032 + L1M4 LINE L1 3587 3737 -2409 * 4464 136 31 52 chr4 172382625 172383373 -11905289 - L1PA16 LINE L1 -97 6069 5329 707 200 0 15 chr4 172383373 172383508 -11905154 - FLAM_C SINE Alu 0 133 1 4464 136 31 52 chr4 172383508 172383639 -11905023 - L1PA16 LINE L1 -837 5329 5197 1735 259 39 35 chr4 172383658 172384457 -11904205 - L1ME2 LINE L1 -2878 3268 2433 225 48 24 48 chr4 172384516 172384558 -11904104 - L1M3 LINE L1 -594 5740 5700 495 169 0 0 chr4 172384799 172384923 -11903739 + (TA)n Simple_repeat Simple_repeat 2 125 0 1000 176 206 47 chr4 172385376 172385672 -11902990 + MLT1A1 LTR MaLR 10 352 -13 1996 120 0 17 chr4 172385740 172386040 -11902622 + AluSx SINE Alu 5 299 -13 34 0 0 0 chr4 172386098 172386132 -11902530 + AT_rich Low_complexity Low_complexity 1 34 0 186 43 0 0 chr4 172386229 172386252 -11902410 + (T)n Simple_repeat Simple_repeat 1 23 0 193 324 65 37 chr4 172386630 172386738 -11901924 - MIR3 SINE MIR -14 194 84 370 317 24 24 chr4 172387299 172387466 -11901196 - L1ME2 LINE L1 -81 6083 5917 1369 275 101 39 chr4 172387506 172388677 -11899985 - L1M3 LINE L1 -509 5653 4423 1060 138 55 0 chr4 172388840 172389021 -11899641 - L1PA11 LINE L1 -16 6158 5968 1002 138 19 0 chr4 172389026 172389186 -11899476 - FRAM SINE Alu -9 167 5 3133 174 62 5 chr4 172389197 172389824 -11898838 - L1MC1 LINE L1 0 6333 5671 339 234 82 18 chr4 172389834 172390005 -11898657 - L1M3 LINE L1 -2812 3334 3153 * 9786 204 27 8 chr4 172389986 172390527 -11898135 - L1PA15 LINE L1 -7 6809 6280 2262 108 7 0 chr4 172390527 172390834 -11897828 - AluSc SINE Alu 0 309 1 9786 204 27 8 chr4 172390834 172394355 -11894307 - L1PA15 LINE L1 -536 6280 1440 3222 265 42 25 chr4 172394418 172395309 -11893353 - L1PA15 LINE L1 -5881 906 1 21 0 0 0 chr4 172395364 172395385 -11893277 + AT_rich Low_complexity Low_complexity 1 21 0 3366 202 16 8 chr4 172395477 172396216 -11892446 - L1MB2 LINE L1 0 6407 5663 552 93 0 0 chr4 172396216 172396291 -11892371 - AluSg1 SINE Alu -214 95 21 3320 247 82 45 chr4 172396305 172397094 -11891568 - L1MB2 LINE L1 -2701 3681 2923 2327 51 17 0 chr4 172397094 172397388 -11891274 - AluY SINE Alu -12 299 1 3320 247 82 45 chr4 172397388 172398692 -11889970 - L1MB2 LINE L1 -3459 2923 1485 390 322 23 17 chr4 172398697 172398871 -11889791 - L1MB2 LINE L1 -5041 1262 1088 25 51 0 0 chr4 172399406 172399445 -11889217 + AT_rich Low_complexity Low_complexity 1 39 0 1014 275 55 14 chr4 172399573 172400061 -11888601 - L1M4 LINE L1 -3104 3042 2535 2310 54 0 63 chr4 172400885 172401202 -11887460 - AluY SINE Alu -14 297 1 43 0 0 0 chr4 172401375 172401418 -11887244 + AT_rich Low_complexity Low_complexity 1 43 0 2016 159 95 33 chr4 172401625 172402016 -11886646 - MSTB LTR MaLR 0 426 14 279 250 31 10 chr4 172402096 172402192 -11886470 + L1MB8 LINE L1 4171 4268 -1878 257 331 46 0 chr4 172402562 172402692 -11885970 + L1MB8 LINE L1 5684 5819 -302 4150 186 18 50 chr4 172402804 172402987 -11885675 - L1MA9 LINE L1 0 6312 6125 1655 181 7 7 chr4 172402987 172403296 -11885366 - AluSx SINE Alu -3 309 1 4150 186 18 50 chr4 172403296 172404111 -11884551 - L1MA9 LINE L1 -187 6125 5346 2294 264 110 41 chr4 172404110 172404329 -11884333 - L1 LINE L1 -3153 3229 3026 * 2248 92 0 0 chr4 172404329 172404621 -11884041 - AluSg SINE Alu -5 305 14 2294 264 110 41 chr4 172404621 172406994 -11881668 - L1 LINE L1 -3356 3026 811 1153 198 141 12 chr4 172407071 172407404 -11881258 + L1MB8 LINE L1 5802 6177 -1 423 246 99 6 chr4 172407538 172407712 -11880950 - L1 LINE L1 -3709 2673 2482 2098 143 0 0 chr4 172408484 172408792 -11879870 + AluSx SINE Alu 1 308 -4 354 327 71 24 chr4 172409289 172409457 -11879205 + MIR SINE MIR 59 234 -28 283 231 74 37 chr4 172409525 172409633 -11879029 - L1ME LINE L1 -526 5989 5878 1100 234 72 34 chr4 172410154 172410913 -11877749 - L1MDa LINE L1 -745 5795 2481 * 1369 243 60 25 chr4 172410901 172411283 -11877379 - L1MDa LINE L1 -723 1970 1603 1772 150 8 59 chr4 172411283 172411657 -11877005 - THE1A LTR MaLR 0 355 1 11499 92 8 4 chr4 172411657 172413232 -11875430 - THE1B-int LTR MaLR 0 1580 1 1981 142 16 48 chr4 172413233 172413607 -11875055 - THE1B LTR MaLR -2 362 1 1369 243 60 25 chr4 172413607 172413767 -11874895 - L1MDa LINE L1 -1089 1604 839 6223 144 56 30 chr4 172414329 172415529 -11873133 + Tigger3b DNA MER2_type 1 1231 0 11572 104 110 12 chr4 172415700 172417587 -11871075 - L1PBa LINE L1 -4159 2704 634 1198 142 5 0 chr4 172417587 172417784 -11870878 - L1PBa LINE L1 -6663 200 3 1583 204 16 0 chr4 172418068 172418372 -11870290 - AluJb SINE Alu -1 311 3 6054 91 27 2 chr4 172418733 172419682 -11868980 - L1PA8A LINE L1 -2 6129 5159 438 69 0 0 chr4 172419682 172419740 -11868922 + (TG)n Simple_repeat Simple_repeat 1 58 0 6054 91 27 2 chr4 172419740 172420105 -11868557 - L1PA8A LINE L1 -972 5159 4805 207 0 0 0 chr4 172420341 172420364 -11868298 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2623 65 3 0 chr4 172420364 172420705 -11867957 - L1PA5 LINE L1 -11 6143 5802 3383 138 26 0 chr4 172420697 172421226 -11867436 - L1P LINE L1 -5602 544 2 430 356 98 30 chr4 172422764 172423191 -11865471 + L2 LINE L2 2825 3280 -33 23 33 0 0 chr4 172423454 172423484 -11865178 + AT_rich Low_complexity Low_complexity 1 30 0 1193 315 54 16 chr4 172423847 172424275 -11864387 + L1M2 LINE L1 2 445 -6404 6869 229 14 16 chr4 172424661 172426254 -11862408 + L1M2 LINE L1 1070 2660 -4189 200 282 14 56 chr4 172427268 172427339 -11861323 - L2 LINE L2 0 3272 3205 1014 268 54 43 chr4 172428584 172429025 -11859637 - MLT1J2 LTR MaLR -2 448 3 728 307 30 82 chr4 172429291 172429815 -11858847 - L2 LINE L2 0 3313 2817 221 254 16 16 chr4 172430404 172430526 -11858136 + GA-rich Low_complexity Low_complexity 1 122 0 29 0 0 0 chr4 172431186 172431215 -11857447 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4 172432190 172432213 -11856449 + AT_rich Low_complexity Low_complexity 1 23 0 2500 214 30 95 chr4 172432634 172433374 -11855288 - L1MD2 LINE L1 0 6242 5551 2232 195 28 6 chr4 172433365 172433867 -11854795 - L1MDa LINE L1 -4249 2291 1779 * 2241 127 0 0 chr4 172434032 172434340 -11854322 - AluSx SINE Alu 0 312 5 360 287 31 23 chr4 172435465 172435594 -11853068 - MER94 DNA DNA 0 134 5 204 67 0 0 chr4 172435669 172435699 -11852963 + (TG)n Simple_repeat Simple_repeat 1 30 0 21 36 0 0 chr4 172436228 172436256 -11852406 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr4 172437436 172437468 -11851194 + AT_rich Low_complexity Low_complexity 1 32 0 216 250 0 0 chr4 172437468 172437520 -11851142 + CT-rich Low_complexity Low_complexity 3 54 0 651 275 50 30 chr4 172437673 172437873 -11850789 - MIR SINE MIR -1 261 58 2958 156 72 10 chr4 172438745 172439257 -11849405 - MER21B LTR ERV1 0 863 320 2265 123 6 33 chr4 172439259 172439625 -11849037 + THE1B LTR MaLR 1 356 -8 1546 192 18 40 chr4 172439625 172439999 -11848663 - MER39 LTR ERV1 -184 523 32 320 297 114 37 chr4 172440348 172440594 -11848068 - HAL1 LINE L1 -694 1813 1549 382 280 70 74 chr4 172440784 172441027 -11847635 - HAL1 LINE L1 -1224 1283 1042 1208 164 34 57 chr4 172441030 172441292 -11847370 + AluJo SINE Alu 43 298 -14 307 89 0 0 chr4 172441314 172441359 -11847303 - MADE1 DNA Mariner 0 80 36 313 381 72 0 chr4 172441441 172441635 -11847027 - MLT1J LTR MaLR -140 371 164 940 88 36 15 chr4 172441635 172441772 -11846890 + THE1B LTR MaLR 1 140 -224 8837 104 152 0 chr4 172441772 172443124 -11845538 + THE1B-int LTR MaLR 23 1579 -1 2375 106 19 32 chr4 172443125 172443494 -11845168 + THE1B LTR MaLR 1 364 0 246 367 33 13 chr4 172443494 172443644 -11845018 - MLT1J LTR MaLR -343 168 16 2040 124 24 0 chr4 172443646 172443944 -11844718 + AluSx SINE Alu 1 305 -7 238 263 101 48 chr4 172443980 172444208 -11844454 - HAL1 LINE L1 -1456 1051 812 24 0 0 0 chr4 172444481 172444505 -11844157 + AT_rich Low_complexity Low_complexity 1 24 0 1268 316 81 66 chr4 172444526 172445912 -11842750 - HERV16 LTR ERVL -2818 2178 884 783 343 60 18 chr4 172446752 172447201 -11841461 - HERV16 LTR ERVL -4509 487 20 263 279 0 0 chr4 172448006 172448074 -11840588 + L1ME LINE L1 5614 5681 -440 1770 122 29 19 chr4 172448333 172448644 -11840018 - L1MA7 LINE L1 0 6291 5978 23 0 0 0 chr4 172449223 172449246 -11839416 + AT_rich Low_complexity Low_complexity 1 23 0 309 211 0 0 chr4 172449848 172449905 -11838757 + L2 LINE L2 3257 3313 0 23 0 0 0 chr4 172449930 172449953 -11838709 + AT_rich Low_complexity Low_complexity 1 23 0 1578 169 13 42 chr4 172450101 172450409 -11838253 - AluJb SINE Alu -13 299 1 3528 237 39 11 chr4 172451290 172451680 -11836982 - L1 LINE L1 -2181 4201 3824 2268 62 0 0 chr4 172451680 172451968 -11836694 - L1PA7 LINE L1 -1 6153 5866 3528 237 39 11 chr4 172451968 172453531 -11835131 - L1 LINE L1 -2558 3824 2083 22 0 0 0 chr4 172453587 172453609 -11835053 + AT_rich Low_complexity Low_complexity 1 22 0 1316 25 0 0 chr4 172453616 172453773 -11834889 - L1PA4 LINE L1 -2 6153 5997 249 240 0 0 chr4 172453774 172453824 -11834838 + L1 LINE L1 2236 2285 -3861 641 305 85 40 chr4 172454049 172454426 -11834236 - L1 LINE L1 -5745 568 175 315 279 0 12 chr4 172454833 172454919 -11833743 - L1MC4 LINE L1 -1340 6702 6618 206 114 0 45 chr4 172455069 172455113 -11833549 + (TATG)n Simple_repeat Simple_repeat 3 44 0 270 0 0 0 chr4 172455564 172455594 -11833068 + (A)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr4 172456814 172456835 -11831827 + AT_rich Low_complexity Low_complexity 1 21 0 1113 227 45 7 chr4 172456985 172457254 -11831408 - AluJo SINE Alu -12 300 22 2161 110 0 0 chr4 172457274 172457573 -11831089 + AluSg SINE Alu 1 299 -11 636 299 122 55 chr4 172458158 172458646 -11830016 + L2 LINE L2 2772 3313 0 32 26 0 0 chr4 172460987 172461026 -11827636 + AT_rich Low_complexity Low_complexity 1 39 0 241 184 15 0 chr4 172461083 172461150 -11827512 + L1MC4 LINE L1 2007 6986 -1336 232 232 91 20 chr4 172461102 172461201 -11827461 - L1MC4 LINE L1 -1342 6700 6595 * 1656 75 4 0 chr4 172463427 172463655 -11825007 + L1MA3 LINE L1 6077 6305 0 740 178 205 5 chr4 172463667 172463852 -11824810 + AluJb SINE Alu 87 308 -4 2154 81 10 14 chr4 172463878 172464175 -11824487 - AluY SINE Alu -15 296 1 23 0 0 0 chr4 172464194 172464217 -11824445 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr4 172464312 172464343 -11824319 + AT_rich Low_complexity Low_complexity 1 31 0 437 301 81 49 chr4 172465339 172465724 -11822938 + L1M4 LINE L1 3685 4081 -2065 529 271 59 35 chr4 172467421 172467624 -11821038 + MIR SINE MIR 42 249 -13 22 35 0 0 chr4 172468254 172468283 -11820379 + AT_rich Low_complexity Low_complexity 1 29 0 238 216 0 0 chr4 172468467 172468518 -11820144 + (TA)n Simple_repeat Simple_repeat 2 52 0 813 281 143 16 chr4 172468519 172469071 -11819591 - L1MEc LINE L1 -2458 3757 3136 323 232 54 18 chr4 172469075 172469187 -11819475 + L1ME LINE L1 5616 5731 -433 1414 226 44 10 chr4 172469193 172469605 -11819057 - L1MEc LINE L1 -3953 2443 2018 448 45 65 45 chr4 172469945 172470099 -11818563 + (TA)n Simple_repeat Simple_repeat 2 158 0 2138 114 0 7 chr4 172470188 172470477 -11818185 - AluSx SINE Alu -25 287 1 628 311 202 39 chr4 172470969 172471816 -11816846 - L2 LINE L2 -5 3308 2296 288 175 111 135 chr4 172472816 172472875 -11815787 - Charlie1b DNA MER1_type -2245 516 457 2276 89 3 0 chr4 172472875 172473168 -11815494 + AluY SINE Alu 1 294 -17 288 175 111 135 chr4 172473168 172473234 -11815428 - Charlie1b DNA MER1_type -2304 457 394 548 239 97 0 chr4 172473247 172473381 -11815281 + FAM SINE Alu 13 159 -26 1030 258 50 0 chr4 172473449 172473751 -11814911 - Charlie1b DNA MER1_type -200 323 7 582 352 113 45 chr4 172473892 172474884 -11813778 + L2 LINE L2 1721 2779 -535 199 194 28 0 chr4 172474941 172474977 -11813685 - L2 LINE L2 -24 3248 3212 * 548 205 45 0 chr4 172474946 172475058 -11813604 - MIR SINE MIR -24 238 122 1692 143 15 0 chr4 172475575 172475841 -11812821 + AluSq SINE Alu 37 306 -7 24 0 0 0 chr4 172476051 172476075 -11812587 + AT_rich Low_complexity Low_complexity 1 24 0 220 174 14 14 chr4 172476533 172476602 -11812060 + (TA)n Simple_repeat Simple_repeat 2 70 0 2006 120 4 0 chr4 172477943 172478217 -11810445 + AluSq SINE Alu 1 275 -38 21 0 0 0 chr4 172478746 172478767 -11809895 + AT_rich Low_complexity Low_complexity 1 21 0 2161 181 213 104 chr4 172479000 172479920 -11808742 + LTR28 LTR ERV1 1 1020 0 440 302 112 0 chr4 172480940 172481145 -11807517 - L1ME3A LINE L1 -5 6165 5938 212 368 97 13 chr4 172481409 172481637 -11807025 + MIR SINE MIR 15 261 -1 23 33 0 0 chr4 172481962 172481992 -11806670 + AT_rich Low_complexity Low_complexity 1 30 0 3123 11 0 0 chr4 172482082 172482440 -11806222 + L1PA2 LINE L1 5798 6155 0 1945 118 36 0 chr4 172483193 172483472 -11805190 + AluSc SINE Alu 1 289 -20 26 50 0 0 chr4 172484086 172484126 -11804536 + AT_rich Low_complexity Low_complexity 1 40 0 1903 109 71 0 chr4 172484190 172484473 -11804189 - AluSp SINE Alu -10 303 1 2009 136 3 3 chr4 172484804 172485114 -11803548 + AluY SINE Alu 1 310 -1 412 219 29 29 chr4 172486008 172486113 -11802549 + MLT1I LTR MaLR 305 409 0 182 236 22 112 chr4 172487382 172487471 -11801191 + MIR SINE MIR 15 95 -167 200 345 84 25 chr4 172487729 172487848 -11800814 - L2 LINE L2 -8 3264 3139 243 269 0 0 chr4 172487910 172487962 -11800700 + LTR30 LTR ERV1 1 52 -670 865 168 32 104 chr4 172487962 172488212 -11800450 + LTR12 LTR ERV1 53 284 -430 348 187 44 22 chr4 172488212 172488303 -11800359 + LTR30 LTR ERV1 551 643 -79 2097 98 3 3 chr4 172488310 172488607 -11800055 - AluY SINE Alu -14 297 1 639 152 3 8 chr4 172488616 172488734 -11799928 + LTR12 LTR ERV1 615 2337 0 241 298 81 16 chr4 172488762 172488886 -11799776 - L2 LINE L2 -672 2642 2511 215 229 43 0 chr4 172490156 172490226 -11798436 + T-rich Low_complexity Low_complexity 1 73 0 1360 119 5 0 chr4 172490815 172491016 -11797646 - L1PB2 LINE L1 -4 6147 5946 419 88 0 0 chr4 172491016 172491073 -11797589 + THE1C LTR MaLR 1 57 -318 4690 113 50 28 chr4 172491073 172491170 -11797492 - L1PB2 LINE L1 -109 6042 5949 2522 118 8 0 chr4 172491170 172491542 -11797120 + THE1C LTR MaLR 1 375 0 4690 113 50 28 chr4 172491542 172492292 -11796370 - L1PB2 LINE L1 -202 5949 5170 24 32 0 0 chr4 172492514 172492545 -11796117 + AT_rich Low_complexity Low_complexity 1 31 0 459 250 105 19 chr4 172492747 172492975 -11795687 - MIR SINE MIR -3 259 16 227 276 0 11 chr4 172494673 172494760 -11793902 - L1MC4 LINE L1 -1339 6703 6618 206 114 0 45 chr4 172494910 172494954 -11793708 + (TATG)n Simple_repeat Simple_repeat 3 44 0 242 36 0 0 chr4 172495405 172495433 -11793229 + (A)n Simple_repeat Simple_repeat 1 28 0 22 0 0 0 chr4 172495591 172495613 -11793049 + AT_rich Low_complexity Low_complexity 1 22 0 1884 171 68 64 chr4 172545990 172546424 -11742238 - L1PB2 LINE L1 -1306 4840 4409 189 0 0 0 chr4 172546424 172546445 -11742217 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1884 171 68 64 chr4 172546445 172546462 -11742200 - L1PB2 LINE L1 -1737 4409 4394 1616 187 10 48 chr4 172546462 172546772 -11741890 - AluJb SINE Alu -14 298 1 1884 171 68 64 chr4 172546772 172546816 -11741846 - L1PB2 LINE L1 -1752 4394 4342 525 32 0 0 chr4 172546816 172546879 -11741783 + (TA)n Simple_repeat Simple_repeat 1 63 0 34 0 0 0 chr4 172546949 172546983 -11741679 + AT_rich Low_complexity Low_complexity 1 34 0 1097 181 4 26 chr4 172546983 172547215 -11741447 - L1PA8A LINE L1 -12 6119 5893 278 196 0 18 chr4 172548356 172548412 -11740250 + MLT1E3 LTR MaLR 1 55 -569 3257 122 31 6 chr4 172548416 172548925 -11739737 + MER41B LTR ERV1 1 522 -113 823 124 0 0 chr4 172548925 172549046 -11739616 - AluSg/x SINE Alu -8 304 184 690 139 0 0 chr4 172549046 172549154 -11739508 + MER41A LTR ERV1 446 553 -1 2356 86 3 0 chr4 172549542 172549845 -11738817 + AluY SINE Alu 1 304 -7 7738 16 6 1 chr4 172549954 172550980 -11737682 + L1PA3 LINE L1 5126 6155 0 203 122 0 24 chr4 172550986 172551027 -11737635 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 406 58 0 0 chr4 172551028 172551080 -11737582 + L1PA6 LINE L1 6100 6151 -3 1098 233 47 39 chr4 172551124 172551485 -11737177 + MLT1A1 LTR MaLR 2 365 0 25 31 0 0 chr4 172551689 172551721 -11736941 + AT_rich Low_complexity Low_complexity 1 32 0 42 48 0 0 chr4 172551737 172551800 -11736862 + AT_rich Low_complexity Low_complexity 1 63 0 2113 123 0 13 chr4 172552040 172552342 -11736320 + AluSg SINE Alu 3 300 -10 1493 254 84 31 chr4 172553158 172553522 -11735140 + ERVL-E LTR ERVL 4634 4977 -787 2428 73 0 13 chr4 172553522 172553836 -11734826 + AluY SINE Alu 1 310 -1 1493 254 84 31 chr4 172553836 172554210 -11734452 + ERVL-E LTR ERVL 4977 5433 -331 335 82 0 20 chr4 172554410 172554459 -11734203 - Alu SINE Alu -250 52 5 315 277 17 34 chr4 172554474 172554593 -11734069 + ERVL-E LTR ERVL 5606 5722 -42 1394 247 18 38 chr4 172554618 172555183 -11733479 + MLT2E LTR ERVL 4 628 0 327 298 62 31 chr4 172555186 172555347 -11733315 - L1M4 LINE L1 -2441 3705 3540 44 46 0 0 chr4 172555664 172555729 -11732933 + AT_rich Low_complexity Low_complexity 1 65 0 22 99 0 0 chr4 172555900 172555971 -11732691 + AT_rich Low_complexity Low_complexity 1 71 0 351 275 77 58 chr4 172556104 172556311 -11732351 + HAL1b LINE L1 185 395 -953 2176 108 3 0 chr4 172556682 172556979 -11731683 + AluSg SINE Alu 1 298 -12 26 30 0 0 chr4 172557357 172557390 -11731272 + AT_rich Low_complexity Low_complexity 1 33 0 409 262 32 5 chr4 172558399 172558529 -11730133 + MIR SINE MIR 34 162 -63 24 0 0 0 chr4 172558588 172558612 -11730050 + AT_rich Low_complexity Low_complexity 1 24 0 455 265 23 30 chr4 172558835 172558967 -11729695 - MER5B DNA MER1_type 0 178 48 207 293 135 27 chr4 172559130 172559352 -11729310 + L2 LINE L2 2145 2390 -924 988 225 39 29 chr4 172559529 172559809 -11728853 - LTR52 LTR ERVL -108 313 31 286 266 105 14 chr4 172560174 172560317 -11728345 + L1MEd LINE L1 6 161 -5958 762 247 17 6 chr4 172560416 172560594 -11728068 - MIR SINE MIR -68 194 15 199 195 42 0 chr4 172560773 172560891 -11727771 + (TA)n Simple_repeat Simple_repeat 1 123 0 24 32 0 0 chr4 172560940 172560971 -11727691 + AT_rich Low_complexity Low_complexity 1 31 0 227 170 0 60 chr4 172561117 172561217 -11727445 + (TA)n Simple_repeat Simple_repeat 1 94 0 207 114 0 0 chr4 172561243 172561278 -11727384 + (CGAT)n Simple_repeat Simple_repeat 2 36 0 26 30 0 0 chr4 172562001 172562034 -11726628 + AT_rich Low_complexity Low_complexity 1 33 0 1161 113 31 10 chr4 172562035 172562230 -11726432 - L1PA16 LINE L1 -11 6155 5957 21 36 0 0 chr4 172562254 172562282 -11726380 + AT_rich Low_complexity Low_complexity 1 28 0 424 328 23 6 chr4 172562290 172562467 -11726195 - MIR SINE MIR -15 247 68 1337 159 26 4 chr4 172562577 172562809 -11725853 + AluSg/x SINE Alu 66 302 -10 23 54 0 0 chr4 172563325 172563362 -11725300 + AT_rich Low_complexity Low_complexity 1 37 0 626 239 25 40 chr4 172563403 172563604 -11725058 + L1MA9 LINE L1 6042 6239 -73 2227 75 3 3 chr4 172563619 172563928 -11724734 + AluSg SINE Alu 1 309 0 189 0 0 0 chr4 172563928 172563949 -11724713 + (TTA)n Simple_repeat Simple_repeat 3 23 0 35 54 0 0 chr4 172565417 172565473 -11723189 + AT_rich Low_complexity Low_complexity 1 56 0 23 54 0 0 chr4 172565681 172565718 -11722944 + AT_rich Low_complexity Low_complexity 1 37 0 2830 169 7 31 chr4 172565770 172566325 -11722337 - L1MB1 LINE L1 -29 6160 5619 857 212 5 0 chr4 172566340 172566533 -11722129 - L1MB1 LINE L1 -1008 5138 4945 317 160 40 0 chr4 172566545 172566620 -11722042 - L1MB1 LINE L1 -1295 4851 4774 * 3413 182 84 18 chr4 172566610 172567727 -11720935 - L1M3 LINE L1 -716 5618 4414 189 0 0 0 chr4 172567728 172567749 -11720913 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 729 161 0 25 chr4 172567766 172567884 -11720778 - AluJb SINE Alu -15 297 183 1253 225 14 42 chr4 172567990 172568275 -11720387 - AluJb SINE Alu -31 281 5 525 32 0 0 chr4 172568323 172568386 -11720276 + (TA)n Simple_repeat Simple_repeat 1 63 0 201 108 0 0 chr4 172568457 172568494 -11720168 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 25190 159 23 34 chr4 172568510 172569305 -11719357 - L1PA8A LINE L1 -28 6418 5616 2563 77 0 0 chr4 172569305 172569616 -11719046 + AluY SINE Alu 1 311 0 25190 159 23 34 chr4 172569616 172571721 -11716941 - L1PA8A LINE L1 -830 5616 3490 213 39 0 0 chr4 172571721 172571747 -11716915 + (TG)n Simple_repeat Simple_repeat 1 26 0 25190 159 23 34 chr4 172571747 172572421 -11716241 - L1PA8A LINE L1 -2956 3490 2810 1896 150 0 3 chr4 172572421 172572708 -11715954 - AluSx SINE Alu -26 286 1 25190 159 23 34 chr4 172572708 172575554 -11713108 - L1PA8A LINE L1 -3636 2810 1 710 195 67 18 chr4 172575572 172575676 -11712986 + L1 LINE L1 3509 3625 -2521 1469 216 28 14 chr4 172575676 172576033 -11712629 + MLT1A1 LTR MaLR 4 365 0 710 195 67 18 chr4 172576033 172576092 -11712570 + L1 LINE L1 3625 3680 -2466 2011 189 24 0 chr4 172576094 172576464 -11712198 - MSTB1 LTR MaLR -2 430 52 2789 186 55 10 chr4 172576493 172577112 -11711550 + L1 LINE L1 3675 4321 -1825 21 0 0 0 chr4 172577876 172577897 -11710765 + AT_rich Low_complexity Low_complexity 1 21 0 716 278 62 0 chr4 172578132 172578341 -11710321 + MER58A DNA MER1_type 2 223 -1 22 35 0 0 chr4 172578667 172578696 -11709966 + AT_rich Low_complexity Low_complexity 1 29 0 1005 239 39 54 chr4 172579919 172580254 -11708408 - MLT1A1 LTR MaLR 0 365 36 486 0 0 0 chr4 172580721 172580775 -11707887 + (TA)n Simple_repeat Simple_repeat 2 55 0 243 300 110 0 chr4 172581081 172581181 -11707481 - L2 LINE L2 -3 3310 3200 402 252 26 17 chr4 172582909 172583024 -11705638 + Charlie8 DNA MER1_type 87 202 -2215 36 23 0 0 chr4 172583544 172583587 -11705075 + AT_rich Low_complexity Low_complexity 1 43 0 1831 114 92 4 chr4 172583641 172583922 -11704740 - AluSx SINE Alu -6 306 1 183 42 0 0 chr4 172584006 172584030 -11704632 + (TA)n Simple_repeat Simple_repeat 1 24 0 2106 69 69 0 chr4 172584423 172584713 -11703949 - AluY SINE Alu -1 310 1 294 73 0 0 chr4 172584904 172584945 -11703717 + (CA)n Simple_repeat Simple_repeat 2 42 0 246 212 45 0 chr4 172585067 172585133 -11703529 - L1ME LINE L1 -331 5839 5771 312 335 64 75 chr4 172585186 172585452 -11703210 - L1ME LINE L1 -2087 5721 5459 2212 116 3 0 chr4 172586549 172586852 -11701810 - AluSx SINE Alu -8 304 1 1074 224 80 113 chr4 172586884 172587362 -11701300 + LTR40b LTR ERVL 1 462 0 213 39 0 0 chr4 172587772 172587798 -11700864 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 2080 110 0 0 chr4 172587808 172588081 -11700581 - AluSx SINE Alu -39 273 1 2377 96 0 10 chr4 172588168 172588481 -11700181 + AluSg SINE Alu 1 310 0 225 65 0 0 chr4 172589138 172589169 -11699493 + (CA)n Simple_repeat Simple_repeat 2 32 0 * 306 0 0 0 chr4 172589168 172589202 -11699460 + (GA)n Simple_repeat Simple_repeat 2 35 0 471 363 110 29 chr4 172590024 172590664 -11697998 - L2 LINE L2 -2 3311 2625 363 237 32 70 chr4 172590669 172590825 -11697837 + LTR33 LTR ERVL 1 150 -371 7379 211 26 18 chr4 172591215 172593978 -11694684 - L1MB2 LINE L1 -1 6170 3380 1458 212 90 14 chr4 172594503 172594871 -11693791 + MSTD LTR MaLR 1 396 0 633 338 75 22 chr4 172595669 172596030 -11692632 + HERV16 LTR ERVL 728 1107 -3889 1701 184 10 3 chr4 172596030 172596450 -11692212 + AluJo SINE Alu 1 422 0 272 137 20 0 chr4 172596459 172596510 -11692152 + G-rich Low_complexity Low_complexity 4 55 0 396 328 106 35 chr4 172596526 172596867 -11691795 + HERV16 LTR ERVL 1101 1465 -3531 765 367 83 21 chr4 172597174 172598466 -11690196 + HERV16 LTR ERVL 1916 3360 -2404 3858 179 89 80 chr4 172598467 172599533 -11689129 - MLT1A2-int LTR MaLR -659 1076 1 248 191 0 0 chr4 172599533 172599580 -11689082 - MLT1A2 LTR MaLR 0 374 328 211 250 0 0 chr4 172599915 172599959 -11688703 - L2 LINE L2 -4 3309 3266 456 268 144 7 chr4 172600437 172600590 -11688072 - MER5A DNA MER1_type -6 183 10 198 333 118 46 chr4 172600596 172600749 -11687913 + MIR3 SINE MIR 42 205 -3 288 200 62 15 chr4 172600788 172600853 -11687809 + Tigger5 DNA MER2_type 2251 2318 -5 453 187 0 33 chr4 172600875 172600966 -11687696 - Tigger5 DNA MER2_type -2235 88 1 296 236 153 0 chr4 172600980 172601052 -11687610 + Tigger5 DNA MER2_type 2240 2322 -1 691 119 16 16 chr4 172602319 172602445 -11686217 + GA-rich Low_complexity Low_complexity 3 128 0 26 0 0 0 chr4 172602549 172602575 -11686087 + AT_rich Low_complexity Low_complexity 1 26 0 801 299 156 3 chr4 172602619 172602997 -11685665 - LTR33A LTR ERVL -1 522 87 215 107 54 36 chr4 172603206 172603262 -11685400 + (TTA)n Simple_repeat Simple_repeat 2 58 0 666 272 61 5 chr4 172603291 172603504 -11685158 - MIR SINE MIR -28 234 10 569 300 83 22 chr4 172603626 172604036 -11684626 - L1MEc LINE L1 -4699 1697 1263 506 345 92 37 chr4 172604140 172604737 -11683925 - L1MEc LINE L1 -5167 1038 409 7877 223 10 19 chr4 172605293 172607342 -11681320 - L1PA15-16 LINE L1 -1914 4935 2896 2195 117 3 0 chr4 172607342 172607650 -11681012 - AluSx SINE Alu -3 309 1 7877 223 10 19 chr4 172607650 172607942 -11680720 - L1PA15-16 LINE L1 -3953 2896 2603 2296 160 3 0 chr4 172607942 172608316 -11680346 + L1PA16 LINE L1 5783 6157 -9 1666 185 11 0 chr4 172608562 172608848 -11679814 + AluJo SINE Alu 8 296 -16 22 35 0 0 chr4 172608933 172608962 -11679700 + AT_rich Low_complexity Low_complexity 1 29 0 369 352 72 53 chr4 172608994 172609312 -11679350 + L1MEd LINE L1 368 691 -5725 681 261 9 75 chr4 172609390 172609616 -11679046 + MIR SINE MIR 25 235 -27 897 173 0 0 chr4 172611065 172611221 -11677441 - MSTD LTR MaLR 0 396 241 313 168 0 16 chr4 172611249 172611349 -11677313 - MSTD LTR MaLR -238 158 4 447 285 97 16 chr4 172611535 172611721 -11676941 + MIR SINE MIR 52 252 -10 24 0 0 0 chr4 172611758 172611782 -11676880 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4 172613595 172613617 -11675045 + AT_rich Low_complexity Low_complexity 1 22 0 757 192 93 75 chr4 172613641 172613855 -11674807 - MER20 DNA MER1_type 0 219 2 201 175 0 25 chr4 172614152 172614192 -11674470 + (TATATG)n Simple_repeat Simple_repeat 4 42 0 2451 221 95 79 chr4 172614192 172616134 -11672528 - L1ME1 LINE L1 -76 6024 4046 2318 241 63 19 chr4 172616145 172616937 -11671725 + L1MEd LINE L1 1508 2515 -4092 1079 184 43 30 chr4 172616957 172617190 -11671472 - L1MA4 LINE L1 -442 5858 5623 630 145 8 15 chr4 172617194 172617325 -11671337 + L1MA4 LINE L1 6165 6294 -6 495 240 0 0 chr4 172617330 172617455 -11671207 + L1MEd LINE L1 2490 2614 -3812 278 276 67 112 chr4 172617927 172618061 -11670601 - L1ME1 LINE L1 -5622 448 321 1585 234 63 16 chr4 172618444 172618885 -11669777 - LTR40b LTR ERVL 0 462 1 1235 207 55 4 chr4 172618885 172619156 -11669506 - HERVL40 LTR ERVL 0 5530 5246 753 329 31 11 chr4 172619114 172619470 -11669192 - MER89-int LTR ERV1 -317 6484 6122 * 3249 292 28 18 chr4 172619743 172621009 -11667653 - HERVL40 LTR ERVL -2170 3360 2054 521 284 71 0 chr4 172621106 172621275 -11667387 - HERVL40 LTR ERVL -4021 1509 1329 29 47 0 0 chr4 172621280 172621323 -11667339 + AT_rich Low_complexity Low_complexity 1 43 0 300 283 83 47 chr4 172621391 172621752 -11666910 - L1MEc LINE L1 -4105 2502 2129 26 30 0 0 chr4 172621812 172621845 -11666817 + AT_rich Low_complexity Low_complexity 1 33 0 394 286 103 39 chr4 172621890 172622475 -11666187 - L1MEc LINE L1 -4718 1708 1087 2597 234 45 18 chr4 172623231 172623901 -11664761 + MER76 LTR ERV 1 688 0 1228 204 0 9 chr4 172624156 172624377 -11664285 - AluJb SINE Alu -22 290 72 1079 188 56 38 chr4 172624692 172624979 -11663683 + L1MA9 LINE L1 6020 6311 -1 21 36 0 0 chr4 172625143 172625171 -11663491 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 172625258 172625280 -11663382 + AT_rich Low_complexity Low_complexity 1 22 0 447 197 206 63 chr4 172625655 172625714 -11662948 - LTR50 LTR ERVL 0 795 746 2235 92 3 3 chr4 172625714 172626007 -11662655 + AluSx SINE Alu 1 293 -19 447 197 206 63 chr4 172626007 172626170 -11662492 - LTR50 LTR ERVL -49 746 541 2085 137 0 3 chr4 172626170 172626483 -11662179 + AluSq SINE Alu 1 312 -1 609 52 0 0 chr4 172626497 172626574 -11662088 + (GAAAA)n Simple_repeat Simple_repeat 4 80 0 327 345 29 7 chr4 172626579 172626718 -11661944 - LTR50 LTR ERVL -250 545 404 503 261 170 29 chr4 172626780 172627021 -11661641 - LTR50 LTR ERVL -520 275 1 195 98 78 0 chr4 172628284 172628335 -11660327 + T-rich Low_complexity Low_complexity 1 55 0 248 284 64 45 chr4 172629045 172629309 -11659353 - L1MEd LINE L1 -3748 2381 2113 1563 116 14 196 chr4 172629611 172630024 -11658638 - MER47A DNA MER2_type -1 365 28 440 293 114 69 chr4 172630026 172630702 -11657960 - L1MEd LINE L1 -4892 1418 681 1129 210 56 8 chr4 172630900 172631152 -11657510 - MER93b LTR ERV1 -109 264 1 390 264 0 0 chr4 172631532 172631623 -11657039 - L1ME3 LINE L1 -12 6150 6060 180 0 0 0 chr4 172631978 172631998 -11656664 + (A)n Simple_repeat Simple_repeat 1 20 0 748 75 19 0 chr4 172632224 172632331 -11656331 + L1PA13 LINE L1 6042 6150 -13 258 233 0 56 chr4 172632522 172632612 -11656050 - HsTC2 DNA Tc2 -1811 87 3 2130 125 26 32 chr4 172634502 172634879 -11653783 + THE1C LTR MaLR 1 375 0 10370 115 34 16 chr4 172634880 172636431 -11652231 + THE1C-int LTR MaLR 2 1580 0 1842 149 46 35 chr4 172636431 172636801 -11651861 + THE1C LTR MaLR 1 374 -1 3877 108 3 20 chr4 172636807 172637420 -11651242 + L1MA3 LINE L1 5703 6305 0 207 0 0 0 chr4 172637544 172637567 -11651095 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 783 176 136 0 chr4 172638624 172638800 -11649862 - L1MB1 LINE L1 -28 6161 5962 541 108 0 0 chr4 172638808 172638891 -11649771 + GSAT Satellite centromeric 97 179 -38 2321 148 10 8 chr4 172638931 172639316 -11649346 - L1MB1 LINE L1 -252 5937 5552 1599 172 38 11 chr4 172639316 172639640 -11649022 + MER61B LTR ERV1 1 425 0 1509 158 8 14 chr4 172639646 172640075 -11648587 - L1MB1 LINE L1 -743 5403 5117 2102 212 34 22 chr4 172641763 172642262 -11646400 - MLT1D LTR MaLR 0 505 1 2818 3 0 3 chr4 172642700 172643008 -11645654 - AluYa5 SINE Alu -4 307 1 1685 199 10 0 chr4 172643648 172643954 -11644708 + AluJo SINE Alu 1 309 -3 298 182 0 34 chr4 172643958 172644046 -11644616 + GA-rich Low_complexity Low_complexity 2 86 0 189 107 0 0 chr4 172644468 172644496 -11644166 + (CATATA)n Simple_repeat Simple_repeat 3 30 0 22 56 0 0 chr4 172645073 172645109 -11643553 + AT_rich Low_complexity Low_complexity 1 36 0 2043 114 4 0 chr4 172646175 172646448 -11642214 + AluSx SINE Alu 4 277 -35 336 48 0 0 chr4 172646454 172646496 -11642166 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 1650 238 122 25 chr4 172646499 172647057 -11641605 + MLT1E2 LTR MaLR 7 618 -8 2090 131 7 0 chr4 172648842 172649148 -11639514 + AluSx SINE Alu 1 308 -4 231 36 0 0 chr4 172649903 172649931 -11638731 + (CA)n Simple_repeat Simple_repeat 2 29 0 2232 66 52 0 chr4 172650275 172650561 -11638101 + AluY SINE Alu 1 301 -10 303 276 35 48 chr4 172650621 172650838 -11637824 + L1P4 LINE L1 5237 5450 -718 443 266 96 53 chr4 172650843 172651125 -11637537 + L1ME LINE L1 5525 5818 -303 493 240 31 73 chr4 172651253 172651445 -11637217 - LTR33A LTR ERVL 0 523 340 17390 52 8 3 chr4 172653113 172655765 -11632897 + L1P1 LINE L1 3088 5751 -404 666 219 0 0 chr4 172706183 172706311 -11582351 + FLAM_C SINE Alu 1 128 -15 183 42 0 0 chr4 172706395 172706419 -11582243 + (CA)n Simple_repeat Simple_repeat 1 24 0 870 243 64 50 chr4 172706705 172707095 -11581567 + L1M4 LINE L1 3955 4354 -1792 661 144 50 38 chr4 172707195 172707355 -11581307 + L1MA3 LINE L1 6144 6305 0 1422 198 32 3 chr4 172707358 172707672 -11580990 + L1MA5 LINE L1 5476 5798 -502 313 239 8 8 chr4 172707672 172707806 -11580856 + (TA)n Simple_repeat Simple_repeat 1 134 0 2281 154 2 34 chr4 172707816 172708252 -11580410 + L1MA5 LINE L1 5805 6226 -74 690 318 27 27 chr4 172709360 172709659 -11579003 - MER110 LTR ERV1 -5 486 188 226 224 35 35 chr4 172709736 172709794 -11578868 - MER110 LTR ERV1 -330 161 104 434 276 247 53 chr4 172709863 172710410 -11578252 + L1M4 LINE L1 2335 3041 -3105 666 184 26 0 chr4 172710410 172710524 -11578138 - FLAM_C SINE Alu -16 117 1 434 276 247 53 chr4 172710524 172710656 -11578006 + L1M4 LINE L1 3041 3146 -3000 651 102 51 88 chr4 172710737 172710856 -11577806 + AluSg/x SINE Alu 170 285 -27 342 61 0 0 chr4 172710856 172710905 -11577757 + (CA)n Simple_repeat Simple_repeat 2 50 0 651 102 51 88 chr4 172710905 172710922 -11577740 + AluSg/x SINE Alu 285 301 -11 321 289 128 0 chr4 172711451 172711607 -11577055 + MER5B DNA MER1_type 3 178 0 1194 289 182 28 chr4 172711652 172712393 -11576269 + L3 LINE CR1 607 1461 -116 198 0 0 0 chr4 172713442 172713464 -11575198 + (CCG)n Simple_repeat Simple_repeat 3 24 0 183 152 30 15 chr4 172713512 172713578 -11575084 + (CCG)n Simple_repeat Simple_repeat 3 69 0 223 176 0 20 chr4 172713975 172714026 -11574636 + C-rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr4 172714108 172714130 -11574532 + GC_rich Low_complexity Low_complexity 1 22 0 207 196 0 0 chr4 172714848 172714894 -11573768 + T-rich Low_complexity Low_complexity 1 46 0 29 28 0 0 chr4 172715244 172715280 -11573382 + AT_rich Low_complexity Low_complexity 1 36 0 209 200 22 0 chr4 172715795 172715840 -11572822 + (TG)n Simple_repeat Simple_repeat 1 46 0 21 36 0 0 chr4 172716458 172716486 -11572176 + AT_rich Low_complexity Low_complexity 1 28 0 1321 198 13 0 chr4 172717553 172717780 -11570882 + Tigger5 DNA MER2_type 4 233 -2090 362 186 0 0 chr4 172717784 172717843 -11570819 + Tigger5 DNA MER2_type 2262 2320 -3 22 35 0 0 chr4 172718534 172718563 -11570099 + AT_rich Low_complexity Low_complexity 1 29 0 605 188 132 89 chr4 172718832 172718862 -11569800 + MER46C DNA MER2_type 23 50 -288 1936 160 16 0 chr4 172718862 172719169 -11569493 - AluSx SINE Alu 0 312 1 605 188 132 89 chr4 172719169 172719441 -11569221 + MER46C DNA MER2_type 50 338 0 414 266 18 9 chr4 172721369 172721482 -11567180 + MIR SINE MIR 8 121 -141 23 0 0 0 chr4 172721505 172721528 -11567134 + AT_rich Low_complexity Low_complexity 1 23 0 2259 81 0 32 chr4 172721563 172721872 -11566790 - AluY SINE Alu -1 310 12 1764 160 3 17 chr4 172722164 172722451 -11566211 - AluJo SINE Alu -19 293 11 206 297 0 0 chr4 172722513 172722587 -11566075 + (TAA)n Simple_repeat Simple_repeat 2 75 0 613 217 104 39 chr4 172722593 172722823 -11565839 - L1ME2 LINE L1 -10 6154 5910 * 2820 219 33 8 chr4 172722801 172723588 -11565074 + L1M4 LINE L1 2924 3730 -2416 22 56 0 0 chr4 172724235 172724271 -11564391 + AT_rich Low_complexity Low_complexity 1 36 0 696 215 24 19 chr4 172724277 172724486 -11564176 + L1M4 LINE L1 4988 5197 -949 294 206 0 0 chr4 172724652 172724725 -11563937 + GA-rich Low_complexity Low_complexity 4 76 0 224 329 41 0 chr4 172725441 172725514 -11563148 + L2 LINE L2 2716 2791 -523 3340 121 31 17 chr4 172725888 172726427 -11562235 + LTR10A LTR ERV1 1 547 -62 405 174 0 42 chr4 172726529 172726673 -11561989 + (TA)n Simple_repeat Simple_repeat 1 138 0 524 117 0 82 chr4 172726712 172726908 -11561754 + (TA)n Simple_repeat Simple_repeat 1 180 0 189 159 11 57 chr4 172726920 172727008 -11561654 + (TA)n Simple_repeat Simple_repeat 1 84 0 302 219 69 94 chr4 172727045 172727205 -11561457 - L1ME4a LINE L1 -35 6086 5931 1465 356 72 22 chr4 172727326 172728375 -11560287 + L2 LINE L2 1717 2817 -497 1799 241 54 18 chr4 172729440 172730013 -11558649 + L1MC/D LINE L1 2463 3056 -3090 198 150 0 0 chr4 172730070 172730110 -11558552 + (TA)n Simple_repeat Simple_repeat 1 40 0 214 186 0 0 chr4 172730191 172730234 -11558428 + (TA)n Simple_repeat Simple_repeat 1 43 0 1403 236 36 30 chr4 172730234 172730733 -11557929 + L1MC/D LINE L1 3095 3596 -2550 2754 217 51 20 chr4 172730733 172731098 -11557564 + L1MC/D LINE L1 3802 4154 -1992 2049 119 3 49 chr4 172731098 172731425 -11557237 + AluSx SINE Alu 1 312 0 2754 217 51 20 chr4 172731425 172731991 -11556671 + L1MC/D LINE L1 4154 4943 -1203 231 379 0 25 chr4 172732040 172732201 -11556461 + MIR SINE MIR 106 262 0 267 31 0 0 chr4 172732303 172732335 -11556327 + (CA)n Simple_repeat Simple_repeat 2 33 0 385 363 42 16 chr4 172732517 172732707 -11555955 + MIR SINE MIR 38 232 -30 364 280 0 0 chr4 172732967 172733060 -11555602 - MIR SINE MIR -5 257 165 695 289 102 39 chr4 172733128 172733540 -11555122 - MER110-int LTR ERV1 -1044 3603 3166 1251 85 45 6 chr4 172733724 172733901 -11554761 - AluY SINE Alu 0 311 128 1590 72 5 5 chr4 172734002 172734210 -11554452 + AluSp SINE Alu 104 311 -2 364 286 0 0 chr4 172734210 172734287 -11554375 - MER110-int LTR ERV1 -1974 2673 2597 946 300 16 50 chr4 172734351 172734788 -11553874 - MER110-int LTR ERV1 -1629 3018 2597 727 301 37 42 chr4 172734845 172735227 -11553435 - MER110-int LTR ERV1 -2422 2225 1846 422 199 8 71 chr4 172736448 172736600 -11552062 - L1M4 LINE L1 -1472 4674 4538 410 263 0 0 chr4 172736662 172736761 -11551901 + L1MC/D LINE L1 5488 5586 -2199 315 300 27 0 chr4 172736982 172737092 -11551570 - MLT1L LTR MaLR -23 592 480 2390 109 120 5 chr4 172737374 172737758 -11550904 - MSTA LTR MaLR 0 428 1 23 33 0 0 chr4 172738125 172738155 -11550507 + AT_rich Low_complexity Low_complexity 1 30 0 195 188 0 0 chr4 172738297 172738345 -11550317 + CT-rich Low_complexity Low_complexity 2 49 0 189 107 0 0 chr4 172738345 172738373 -11550289 + (CA)n Simple_repeat Simple_repeat 1 28 0 2663 94 6 3 chr4 172738450 172738813 -11549849 + THE1B LTR MaLR 1 364 0 528 282 85 60 chr4 172739612 172739736 -11548926 - MER115 DNA AcHobo 0 693 574 2627 136 24 9 chr4 172739736 172740156 -11548506 - MSTB LTR MaLR 0 426 1 528 282 85 60 chr4 172740156 172740347 -11548315 - MER115 DNA AcHobo -119 574 370 327 305 76 0 chr4 172740799 172740904 -11547758 + MIR SINE MIR 46 158 -104 28 29 0 0 chr4 172741299 172741334 -11547328 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 172741545 172741566 -11547096 + AT_rich Low_complexity Low_complexity 1 21 0 595 197 8 0 chr4 172741983 172742100 -11546562 + Charlie5 DNA MER1_type 3 120 -2492 1004 215 55 21 chr4 172742109 172742439 -11546223 + Charlie5 DNA MER1_type 2234 2574 -38 1786 176 7 0 chr4 172742449 172742755 -11545907 + AluSx SINE Alu 1 308 -4 741 127 42 12 chr4 172742755 172742920 -11545742 + GA-rich Low_complexity Low_complexity 1 170 0 6854 69 9 3 chr4 172744727 172746219 -11542443 + L1PA8 LINE L1 4675 6172 0 23 0 0 0 chr4 172746565 172746588 -11542074 + AT_rich Low_complexity Low_complexity 1 23 0 1437 292 101 69 chr4 172746781 172747975 -11540687 + L2 LINE L2 2081 3307 -6 1212 317 105 22 chr4 172747992 172748671 -11539991 - L2 LINE L2 -634 2680 1930 1571 183 45 7 chr4 172748671 172748793 -11539869 + AluJb SINE Alu 1 117 -195 270 0 0 0 chr4 172748793 172748823 -11539839 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1571 183 45 7 chr4 172748823 172748990 -11539672 + AluJb SINE Alu 117 301 -11 1212 317 105 22 chr4 172748990 172749070 -11539592 - L2 LINE L2 -1384 1930 1858 288 186 17 17 chr4 172749086 172749145 -11539517 - L2 LINE L2 -1890 1424 1366 292 281 0 0 chr4 172749368 172749432 -11539230 + MIR SINE MIR 64 127 -81 201 39 0 0 chr4 172749619 172749645 -11539017 + (TTTAA)n Simple_repeat Simple_repeat 2 27 0 1534 124 9 26 chr4 172749666 172749899 -11538763 - AluSx SINE Alu -83 229 1 35 63 0 0 chr4 172751394 172751457 -11537205 + AT_rich Low_complexity Low_complexity 1 63 0 2416 104 14 3 chr4 172752407 172752764 -11535898 - L1PA13 LINE L1 -5 6158 5798 244 281 18 0 chr4 172753119 172753176 -11535486 + MLT1L LTR MaLR 205 262 -353 1668 93 0 4 chr4 172753332 172753558 -11535104 - AluSp SINE Alu 0 313 89 234 175 0 0 chr4 172753558 172753598 -11535064 - Alu SINE Alu -138 165 126 3324 159 21 36 chr4 172753819 172754382 -11534280 - L1MA6 LINE L1 -283 6017 5464 1766 136 60 78 chr4 172754382 172754764 -11533898 + THE1C LTR MaLR 1 375 0 3324 159 21 36 chr4 172754764 172754873 -11533789 - L1MA6 LINE L1 -836 5464 5355 2858 186 6 0 chr4 172754868 172755411 -11533251 - L1MA6 LINE L1 -2167 3979 3434 * 25 46 0 46 chr4 172755497 172755562 -11533100 + AT_rich Low_complexity Low_complexity 1 62 0 201 255 117 32 chr4 172756659 172756753 -11531909 - MIR SINE MIR -57 205 104 478 270 115 40 chr4 172757107 172757307 -11531355 - MIR SINE MIR -3 259 45 2253 116 0 3 chr4 172757517 172757820 -11530842 + AluSq SINE Alu 1 302 -11 764 293 51 16 chr4 172758118 172758432 -11530230 + MER110 LTR ERV1 167 491 0 359 278 23 0 chr4 172760220 172760274 -11528388 - L1MA10 LINE L1 -2 6332 6279 1490 252 40 72 chr4 172760274 172760355 -11528307 - L1ME1 LINE L1 -48 6187 6105 2123 108 0 7 chr4 172760355 172760642 -11528020 + AluSc SINE Alu 3 287 -22 1490 252 40 72 chr4 172760642 172761188 -11527474 - L1ME1 LINE L1 -130 6105 5580 4202 265 96 28 chr4 172761352 172762424 -11526238 - L1ME1 LINE L1 -4070 2326 1328 2088 128 0 26 chr4 172762424 172762736 -11525926 - AluSx SINE Alu -8 304 1 4202 265 96 28 chr4 172762736 172762850 -11525812 - L1ME1 LINE L1 -5068 1328 1223 2051 108 3 7 chr4 172762850 172763136 -11525526 - AluSc SINE Alu -1 308 24 4202 265 96 28 chr4 172763136 172763952 -11524710 - L1ME1 LINE L1 -5173 1223 166 232 47 23 23 chr4 172763952 172763995 -11524667 + (TTTG)n Simple_repeat Simple_repeat 1 43 0 4202 265 96 28 chr4 172763995 172764137 -11524525 - L1ME1 LINE L1 -6230 166 35 1623 144 67 0 chr4 172764408 172764726 -11523936 - L1MC/D LINE L1 -624 5720 5436 1180 313 186 25 chr4 172764777 172765698 -11522964 + L2 LINE L2 1518 2586 -728 185 158 26 0 chr4 172765797 172765835 -11522827 + L2 LINE L2 2591 2629 -685 413 255 55 0 chr4 172765998 172766143 -11522519 - MER103 DNA DNA 0 166 14 229 287 93 56 chr4 172767639 172767747 -11520915 + MIR SINE MIR 33 144 -64 13581 133 133 18 chr4 172767749 172769801 -11518861 - Tigger4(Zombi) DNA MER2_type -4 2727 349 2330 74 0 7 chr4 172769801 172770098 -11518564 - AluY SINE Alu -16 295 1 13581 133 133 18 chr4 172770098 172770491 -11518171 - Tigger4(Zombi) DNA MER2_type -2382 349 2 436 309 60 30 chr4 172772102 172772303 -11516359 - MIR SINE MIR -37 225 19 22 35 0 0 chr4 172772362 172772391 -11516271 + AT_rich Low_complexity Low_complexity 1 29 0 920 172 71 161 chr4 172772494 172772872 -11515790 + MER2 DNA MER2_type 1 344 0 461 261 0 0 chr4 172773858 172773950 -11514712 - Tigger7 DNA MER2_type 0 2587 2496 607 162 9 12 chr4 172773977 172773994 -11514668 + MSTA LTR MaLR 312 328 -100 2170 113 0 3 chr4 172773994 172774287 -11514375 - AluSx SINE Alu -20 292 1 607 162 9 12 chr4 172774287 172774398 -11514264 + MSTA LTR MaLR 328 428 0 * 2150 194 31 24 chr4 172774398 172774809 -11513853 - Tigger7 DNA MER2_type -2073 414 1 1249 56 0 0 chr4 172774831 172774991 -11513671 + L1PA4 LINE L1 5996 6155 0 2039 233 144 56 chr4 172775003 172775712 -11512950 + MER21B LTR ERV1 17 787 -76 643 247 190 63 chr4 172776587 172776887 -11511775 - MER46C DNA MER2_type 0 338 1 750 143 19 39 chr4 172778035 172778189 -11510473 - MLT1B LTR MaLR -120 270 120 462 194 112 0 chr4 172778343 172778441 -11510221 - MLT1B LTR MaLR -281 109 1 387 308 19 19 chr4 172778551 172778655 -11510007 - L2 LINE L2 -8 3264 3161 579 357 40 9 chr4 172778765 172778992 -11509670 + MIR SINE MIR 20 253 -9 31 92 0 0 chr4 172779381 172779468 -11509194 + AT_rich Low_complexity Low_complexity 1 87 0 1929 139 39 27 chr4 172781583 172781920 -11506742 + MER2 DNA MER2_type 2 342 -2 651 56 37 0 chr4 172782239 172782347 -11506315 + (TCTA)n Simple_repeat Simple_repeat 2 113 0 22 35 0 0 chr4 172782648 172782677 -11505985 + AT_rich Low_complexity Low_complexity 1 29 0 1455 169 44 80 chr4 172784070 172784467 -11504195 - L1MB5 LINE L1 0 6174 5791 387 0 0 0 chr4 172784467 172784510 -11504152 + (TA)n Simple_repeat Simple_repeat 1 43 0 1455 169 44 80 chr4 172784510 172784525 -11504137 - L1MB5 LINE L1 -383 5791 5777 2552 50 0 0 chr4 172784526 172784825 -11503837 - AluY SINE Alu -12 299 1 1689 201 4 35 chr4 172784833 172785285 -11503377 - L1MB5 LINE L1 -787 5359 4922 659 139 0 0 chr4 172785322 172785430 -11503232 - L1MA7 LINE L1 -4 6287 6180 1970 139 0 17 chr4 172785531 172785832 -11502830 + AluJb SINE Alu 6 301 -11 282 194 16 16 chr4 172785842 172785904 -11502758 + MIR SINE MIR 196 257 -5 31 0 0 0 chr4 172786005 172786036 -11502626 + AT_rich Low_complexity Low_complexity 1 31 0 1710 154 16 26 chr4 172787397 172787702 -11500960 - AluJb SINE Alu -1 311 10 2366 76 0 7 chr4 172789496 172789798 -11498864 - AluSx SINE Alu -12 300 1 4147 172 30 16 chr4 172791170 172792244 -11496418 - L1MA7 LINE L1 -223 6068 4982 2625 174 54 24 chr4 172792243 172792840 -11495822 + L1 LINE L1 4121 4735 -1411 * 1061 247 47 26 chr4 172792881 172793346 -11495316 - L1M4c LINE L1 -4232 2152 1487 2175 113 13 7 chr4 172793727 172794036 -11494626 - AluSx SINE Alu -1 311 1 205 241 48 60 chr4 172794087 172794170 -11494492 + MIR SINE MIR 143 224 -38 402 266 7 45 chr4 172794416 172794561 -11494101 + MER77 LTR ERV1 21 197 -408 907 280 70 100 chr4 172794587 172795169 -11493493 + MER21B LTR ERV1 141 705 -158 27 0 0 0 chr4 172795673 172795700 -11492962 + AT_rich Low_complexity Low_complexity 1 27 0 2390 93 0 6 chr4 172795772 172796083 -11492579 - AluSg1 SINE Alu 0 309 1 697 289 61 35 chr4 172797059 172797287 -11491375 - MIR SINE MIR -23 239 6 2322 99 0 6 chr4 172798056 172798370 -11490292 - AluSx SINE Alu 0 312 1 198 167 0 0 chr4 172800766 172800802 -11487860 + (CAA)n Simple_repeat Simple_repeat 2 37 0 185 304 38 13 chr4 172802423 172802502 -11486160 - L2 LINE L2 -1060 2254 2174 1336 176 9 56 chr4 172803283 172803623 -11485039 + MER33 DNA MER1_type 1 324 0 2093 109 3 0 chr4 172803780 172804086 -11484576 + AluSp SINE Alu 1 307 0 27 29 0 0 chr4 172804350 172804384 -11484278 + AT_rich Low_complexity Low_complexity 1 34 0 2185 165 44 52 chr4 172804725 172805697 -11482965 + L1MB7 LINE L1 5157 6142 -42 1151 23 0 0 chr4 172806651 172806783 -11481879 - AluY SINE Alu -10 301 170 2164 97 7 0 chr4 172806884 172807163 -11481499 - AluY SINE Alu -30 281 1 2379 63 0 13 chr4 172807468 172807771 -11480891 - AluY SINE Alu -12 299 1 26 30 0 0 chr4 172807875 172807908 -11480754 + AT_rich Low_complexity Low_complexity 1 33 0 889 19 0 0 chr4 172809980 172810085 -11478577 - L1PA3 LINE L1 0 6155 6051 979 158 33 92 chr4 172810879 172811119 -11477543 + AluJo SINE Alu 73 298 -14 394 279 66 73 chr4 172811367 172811654 -11477008 - MLT1J LTR MaLR -1 510 226 1694 211 50 18 chr4 172811858 172812242 -11476420 - MSTD LTR MaLR 0 396 1 261 0 0 0 chr4 172813793 172813822 -11474840 + (TG)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr4 172815289 172815310 -11473352 + AT_rich Low_complexity Low_complexity 1 21 0 241 160 100 0 chr4 172815311 172815361 -11473301 + L2 LINE L2 1876 1930 -1384 1220 265 51 43 chr4 172815425 172815508 -11473154 - MER74B LTR ERVL -56 566 485 1770 186 16 30 chr4 172815508 172815878 -11472784 - MLT1A1 LTR MaLR 0 365 1 1220 265 51 43 chr4 172815878 172816281 -11472381 - MER74B LTR ERVL -137 485 76 222 37 0 0 chr4 172816288 172816315 -11472347 + (TA)n Simple_repeat Simple_repeat 1 27 0 2001 279 71 40 chr4 172816383 172817103 -11471559 + L2 LINE L2 2046 2787 -527 512 273 50 88 chr4 172817138 172817457 -11471205 - LTR33 LTR ERVL -50 471 165 716 295 19 17 chr4 172817459 172818045 -11470617 - L1M4 LINE L1 -661 5572 4984 1740 208 0 3 chr4 172818185 172818498 -11470164 - AluJb SINE Alu 0 312 1 270 275 0 0 chr4 172818565 172818634 -11470028 - L1M4 LINE L1 -1548 4667 4599 448 282 98 34 chr4 172818786 172818949 -11469713 - L1M4 LINE L1 -4704 1432 1281 2524 46 7 0 chr4 172818949 172819251 -11469411 + AluY SINE Alu 1 304 -7 448 282 98 34 chr4 172819251 172819692 -11468970 - L1M4 LINE L1 -4855 1281 1021 509 204 0 0 chr4 172819748 172819841 -11468821 - FLAM_A SINE Alu -15 127 35 216 333 47 16 chr4 172820914 172821043 -11467619 + MIR SINE MIR 119 251 -11 321 262 73 78 chr4 172821317 172821523 -11467139 - L1ME3A LINE L1 -221 5949 5745 594 277 52 59 chr4 172821583 172821872 -11466790 - L1M4 LINE L1 -5476 729 443 1026 217 17 116 chr4 172822210 172822615 -11466047 - MLT1A1 LTR MaLR 0 365 1 37 0 0 0 chr4 172824887 172824924 -11463738 + AT_rich Low_complexity Low_complexity 1 37 0 1957 162 78 28 chr4 172825059 172825523 -11463139 - L1MA7 LINE L1 0 6291 5805 221 329 41 0 chr4 172827746 172827819 -11460843 - MIR SINE MIR -5 257 182 459 326 128 43 chr4 172827819 172828597 -11460065 + L2 LINE L2 2448 3313 0 237 331 110 7 chr4 172828596 172828732 -11459930 - MIR SINE MIR -64 198 49 * 1598 291 25 2 chr4 172829166 172829603 -11459059 - LTR16C LTR ERVL 0 491 45 1874 213 47 26 chr4 172830027 172830519 -11458143 + MLT1D LTR MaLR 1 502 -3 344 286 64 44 chr4 172830659 172830827 -11457835 + MIR SINE MIR 20 187 -32 372 265 101 73 chr4 172833416 172834102 -11454560 - L1M4 LINE L1 -2759 3387 2683 21 36 0 0 chr4 172834710 172834738 -11453924 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 172835371 172835399 -11453263 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 172835996 172836017 -11452645 + AT_rich Low_complexity Low_complexity 1 21 0 279 173 0 0 chr4 172836236 172836288 -11452374 + CT-rich Low_complexity Low_complexity 2 53 0 200 290 54 43 chr4 172836339 172836432 -11452230 - MIR SINE MIR -69 193 100 54 29 0 0 chr4 172836798 172836866 -11451796 + AT_rich Low_complexity Low_complexity 1 68 0 1761 151 13 7 chr4 172836992 172837291 -11451371 - AluJo SINE Alu -11 301 1 683 307 224 14 chr4 172838819 172839262 -11449400 - L3 LINE CR1 -164 1413 878 401 250 91 53 chr4 172839950 172840158 -11448504 + MIR SINE MIR 46 261 -1 241 137 55 14 chr4 172841163 172841236 -11447426 + (TA)n Simple_repeat Simple_repeat 2 77 0 2650 178 26 33 chr4 172842171 172842823 -11445839 + L1PA16 LINE L1 5461 6130 -1 256 262 0 78 chr4 172844023 172844126 -11444536 - MARNA DNA Mariner -137 449 355 495 157 26 16 chr4 172844202 172844516 -11444146 + (TA)n Simple_repeat Simple_repeat 1 317 0 440 108 42 59 chr4 172844538 172844860 -11443802 + (TA)n Simple_repeat Simple_repeat 1 316 0 2038 95 23 7 chr4 172845033 172845337 -11443325 - L1PA11 LINE L1 0 6174 5866 684 59 0 20 chr4 172845437 172845538 -11443124 - L1PA11 LINE L1 -717 5444 5346 633 44 1 0 chr4 172845533 172845645 -11443017 + L1P4 LINE L1 5601 5773 -401 * 5560 144 19 3 chr4 172845639 172846577 -11442085 - L1P LINE L1 -794 5352 4400 21 36 0 0 chr4 172846720 172846748 -11441914 + AT_rich Low_complexity Low_complexity 1 28 0 299 146 78 0 chr4 172847180 172847283 -11441379 + (TA)n Simple_repeat Simple_repeat 2 112 0 22 99 0 0 chr4 172847762 172847833 -11440829 + AT_rich Low_complexity Low_complexity 1 71 0 449 327 90 5 chr4 172847959 172848182 -11440480 - MIR SINE MIR -10 252 11 32 0 0 0 chr4 172849664 172849696 -11438966 + AT_rich Low_complexity Low_complexity 1 32 0 364 289 0 32 chr4 172850346 172850464 -11438198 - MIR SINE MIR -67 141 47 2604 237 73 25 chr4 172850782 172851595 -11437067 - L1ME1 LINE L1 0 6166 5315 380 293 101 10 chr4 172851597 172851805 -11436857 - L1ME1 LINE L1 -868 5278 5052 815 150 34 0 chr4 172852284 172852431 -11436231 - L1MA9 LINE L1 0 6312 6161 243 298 141 8 chr4 172853044 172853165 -11435497 + MER5A DNA MER1_type 53 189 0 23 0 0 0 chr4 172853773 172853796 -11434866 + AT_rich Low_complexity Low_complexity 1 23 0 611 189 8 30 chr4 172854775 172854907 -11433755 + AluJo SINE Alu 3 131 -181 25 31 0 0 chr4 172855375 172855407 -11433255 + AT_rich Low_complexity Low_complexity 1 32 0 194 152 0 43 chr4 172856257 172856303 -11432359 + (TATG)n Simple_repeat Simple_repeat 4 47 0 22 56 0 0 chr4 172857895 172857931 -11430731 + AT_rich Low_complexity Low_complexity 1 36 0 974 150 0 6 chr4 172858306 172858466 -11430196 + AluJo SINE Alu 137 295 -17 194 343 14 14 chr4 172858474 172858547 -11430115 + L2 LINE L2 2714 2786 -528 1998 170 13 5 chr4 172858560 172858948 -11429714 - L1MA4 LINE L1 -8 6292 5902 189 264 150 79 chr4 172859281 172859421 -11429241 + L2 LINE L2 3126 3275 -38 1001 79 7 0 chr4 172859700 172859839 -11428823 + L1PA14 LINE L1 6013 6152 -9 380 57 0 0 chr4 172859839 172859889 -11428773 + L1PA14 LINE L1 6100 6152 -9 370 40 0 0 chr4 172859889 172859936 -11428726 + L1PA14 LINE L1 6100 6149 -12 269 98 30 0 chr4 172859939 172860001 -11428661 + L1PA14 LINE L1 6082 6149 -12 381 57 0 0 chr4 172860020 172860073 -11428589 + L1PA14 LINE L1 6100 6152 -9 238 191 0 0 chr4 172860073 172860120 -11428542 + L1PA14 LINE L1 6103 6149 -12 371 75 0 0 chr4 172860120 172860173 -11428489 + L1PA14 LINE L1 6100 6152 -9 344 60 0 0 chr4 172860173 172860220 -11428442 + L1PA14 LINE L1 6100 6149 -12 344 60 0 0 chr4 172860239 172860289 -11428373 + L1PA14 LINE L1 6100 6149 -12 381 57 0 0 chr4 172860308 172860361 -11428301 + L1PA14 LINE L1 6100 6152 -9 316 60 0 20 chr4 172860361 172860408 -11428254 + L1PA14 LINE L1 6100 6148 -13 300 269 0 54 chr4 172860412 172860505 -11428157 - L1MC4 LINE L1 -1339 6703 6616 1878 156 0 13 chr4 172860956 172861271 -11427391 + AluJb SINE Alu 2 312 0 387 299 140 77 chr4 172861882 172862324 -11426338 + L2 LINE L2 2232 2701 -613 340 327 82 79 chr4 172862680 172862895 -11425767 + L2 LINE L2 2936 3154 -118 2057 118 0 13 chr4 172862895 172863199 -11425463 - AluSq SINE Alu -11 302 3 340 327 82 79 chr4 172863199 172863301 -11425361 + L2 LINE L2 3154 3254 -18 307 311 78 44 chr4 172863325 172863505 -11425157 - L2 LINE L2 -927 2387 2202 2211 99 7 0 chr4 172863685 172863978 -11424684 - AluSq SINE Alu -17 296 2 24 0 0 0 chr4 172866027 172866051 -11422611 + AT_rich Low_complexity Low_complexity 1 24 0 2090 119 0 19 chr4 172867140 172867458 -11421204 - AluSx SINE Alu 0 312 1 214 291 13 38 chr4 172867493 172867572 -11421090 + L2 LINE L2 3187 3263 -9 26 0 0 0 chr4 172867588 172867614 -11421048 + AT_rich Low_complexity Low_complexity 1 26 0 426 303 33 0 chr4 172867722 172867844 -11420818 - MIR SINE MIR -106 156 31 2467 164 24 2 chr4 172869237 172869652 -11419010 - MSTB LTR MaLR -2 424 1 446 325 88 37 chr4 172869830 172870181 -11418481 + L2 LINE L2 1935 2303 -1011 46 45 0 0 chr4 172870227 172870294 -11418368 + AT_rich Low_complexity Low_complexity 1 67 0 197 343 30 50 chr4 172870718 172870817 -11417845 - MIR SINE MIR -62 146 50 21 0 0 0 chr4 172872640 172872661 -11416001 + AT_rich Low_complexity Low_complexity 1 21 0 222 211 0 0 chr4 172872702 172872740 -11415922 + (TATG)n Simple_repeat Simple_repeat 2 39 0 205 337 12 0 chr4 172873489 172873572 -11415090 + L2 LINE L2 2176 2259 -1055 234 274 11 42 chr4 172874435 172874530 -11414132 - MIR SINE MIR -44 218 127 344 319 73 37 chr4 172874689 172874932 -11413730 + MIR3 SINE MIR 3 262 0 245 207 11 103 chr4 172874970 172875057 -11413605 + MER112 DNA MER1_type 3 81 -179 3874 204 62 15 chr4 172875190 172876195 -11412467 - MER106B DNA MER1_type -2 1057 6 236 255 108 20 chr4 172876192 172876294 -11412368 + MER112 DNA MER1_type 110 220 -40 * 1497 244 82 23 chr4 172876392 172877011 -11411651 + L1ME2 LINE L1 5456 6155 -9 2300 107 0 0 chr4 172877098 172877406 -11411256 - AluSg1 SINE Alu -1 308 1 385 211 30 60 chr4 172877985 172878118 -11410544 + MIR SINE MIR 134 262 0 209 286 0 39 chr4 172878105 172878182 -11410480 - MIR SINE MIR -99 163 90 * 22 35 0 0 chr4 172878201 172878230 -11410432 + AT_rich Low_complexity Low_complexity 1 29 0 404 236 57 16 chr4 172879828 172879951 -11408711 - MIR SINE MIR -115 147 20 3113 119 23 10 chr4 172879982 172880504 -11408158 - L1MA4 LINE L1 -5 6295 5767 1462 173 78 12 chr4 172882472 172882818 -11405844 - L1MC2 LINE L1 0 6344 5976 2179 113 14 0 chr4 172883327 172883618 -11405044 - AluSx SINE Alu -17 295 1 1800 180 108 14 chr4 172884865 172885309 -11403353 + L1MA9 LINE L1 5827 6312 0 192 125 0 0 chr4 172885320 172885352 -11403310 + (TATATG)n Simple_repeat Simple_repeat 3 34 0 276 53 0 0 chr4 172885584 172885622 -11403040 + (TTA)n Simple_repeat Simple_repeat 3 40 0 40541 35 22 4 chr4 172885622 172891322 -11397340 - L1PA3 LINE L1 -18 6137 321 2568 7 0 0 chr4 172891322 172891639 -11397023 - AluYa5 SINE Alu 0 317 1 40541 35 22 4 chr4 172891639 172891965 -11396697 - L1PA3 LINE L1 -5834 321 2 347 275 0 23 chr4 172892715 172892846 -11395816 + MER112 DNA MER1_type 133 260 0 300 234 113 7 chr4 172893266 172893407 -11395255 + L1MC5 LINE L1 5849 6004 -1804 532 292 20 10 chr4 172894777 172894972 -11393690 + L1MC5 LINE L1 6625 6821 -1140 328 145 13 26 chr4 172895098 172895174 -11393488 + GA-rich Low_complexity Low_complexity 3 77 0 387 258 45 41 chr4 172895282 172895503 -11393159 + L1ME4a LINE L1 5663 5884 -237 409 221 117 84 chr4 172896142 172896296 -11392366 - MLT1G1 LTR MaLR -113 477 319 1986 94 12 0 chr4 172896296 172896552 -11392110 + AluSx SINE Alu 1 259 -53 301 127 18 0 chr4 172896605 172896660 -11392002 + AluSx SINE Alu 245 300 -2 652 301 23 31 chr4 172896825 172897081 -11391581 - MLT1G1 LTR MaLR -341 254 1 230 315 91 21 chr4 172897082 172897225 -11391437 - MLT1G1-int LTR MaLR -1 1734 1582 1295 245 113 35 chr4 172898233 172898744 -11389918 - MLT1E2 LTR MaLR -14 612 62 391 376 29 14 chr4 172898943 172899153 -11389509 + MIR SINE MIR 32 244 -18 181 311 117 19 chr4 172899637 172899740 -11388922 - MIR SINE MIR -91 171 59 2151 109 0 10 chr4 172900860 172901154 -11387508 + AluSc SINE Alu 1 291 -18 2203 103 0 20 chr4 172901254 172901556 -11387106 - AluSg SINE Alu -14 296 1 947 213 70 0 chr4 172902506 172902764 -11385898 + L1MA4 LINE L1 6020 6295 -5 22 0 0 0 chr4 172902827 172902849 -11385813 + AT_rich Low_complexity Low_complexity 1 22 0 650 226 259 49 chr4 172903049 172903517 -11385145 - MLT1G LTR MaLR -24 566 1 468 224 35 28 chr4 172903598 172903741 -11384921 + MLT1I LTR MaLR 48 191 -218 1570 243 49 18 chr4 172903758 172904211 -11384451 + MLT1C LTR MaLR 1 467 0 2095 101 36 0 chr4 172904216 172904492 -11384170 + AluSx SINE Alu 1 286 -26 244 213 0 25 chr4 172904605 172904685 -11383977 + MLT1I LTR MaLR 324 401 -8 1702 131 73 0 chr4 172905097 172905371 -11383291 - AluSx SINE Alu -18 294 1 4248 165 41 42 chr4 172905452 172906419 -11382243 - L1MB2 LINE L1 0 6171 5219 1794 184 45 18 chr4 172906419 172906799 -11381863 + MLT1B LTR MaLR 1 390 0 4248 165 41 42 chr4 172906799 172906854 -11381808 - L1MB2 LINE L1 -952 5219 5165 405 296 47 35 chr4 172906942 172907114 -11381548 + MIR SINE MIR 15 188 -74 36 62 0 0 chr4 172907171 172907235 -11381427 + AT_rich Low_complexity Low_complexity 1 64 0 22 35 0 0 chr4 172909333 172909362 -11379300 + AT_rich Low_complexity Low_complexity 1 29 0 1572 209 88 28 chr4 172909797 172910356 -11378306 - L1M LINE L1 -843 5303 4714 3797 199 86 122 chr4 172910369 172912026 -11376636 - L1MDa LINE L1 -4925 1615 18 1016 208 33 9 chr4 172913537 172913749 -11374913 + MER20 DNA MER1_type 2 218 -1 1711 136 4 15 chr4 172913923 172914187 -11374475 + AluSx SINE Alu 50 310 -2 1912 303 238 22 chr4 172914288 172915801 -11372861 + L2 LINE L2 34 1872 -1442 735 302 17 30 chr4 172916071 172916306 -11372356 - MIR SINE MIR -4 258 27 2365 107 0 0 chr4 172916422 172916730 -11371932 - AluSg SINE Alu -2 308 1 26 64 0 0 chr4 172916796 172916843 -11371819 + AT_rich Low_complexity Low_complexity 1 47 0 198 0 0 0 chr4 172918013 172918035 -11370627 + (TAA)n Simple_repeat Simple_repeat 2 23 0 811 203 0 33 chr4 172918768 172918950 -11369712 + FRAM SINE Alu 1 176 0 661 160 107 0 chr4 172918951 172919082 -11369580 + MLT2C2 LTR ERVL 235 379 -85 230 284 14 0 chr4 172919729 172919803 -11368859 + MLT1J2 LTR MaLR 262 336 -114 209 329 185 30 chr4 172920983 172921491 -11367171 + L2 LINE L2 1511 2097 -1217 1958 143 0 3 chr4 172922542 172922829 -11365833 + AluSx SINE Alu 3 288 -24 27 29 0 0 chr4 172924493 172924527 -11364135 + AT_rich Low_complexity Low_complexity 1 34 0 2074 121 13 13 chr4 172924611 172924917 -11363745 - AluSx SINE Alu -6 306 1 1121 108 0 0 chr4 172925099 172925247 -11363415 - AluY SINE Alu -17 294 147 2519 57 0 0 chr4 172927352 172927649 -11361013 - AluY SINE Alu -14 297 1 321 308 141 19 chr4 172927764 172927920 -11360742 + MIR3 SINE MIR 13 187 -21 1998 140 7 7 chr4 172928883 172929175 -11359487 - AluSx SINE Alu -20 292 1 308 307 18 9 chr4 172929736 172929850 -11358812 + A-rich Low_complexity Low_complexity 4 118 0 2359 180 29 5 chr4 172930377 172930826 -11357836 - MER66B LTR ERV1 0 486 27 1266 215 52 63 chr4 172931313 172931695 -11356967 - MLT1B LTR MaLR -6 384 7 213 167 0 0 chr4 172932297 172932333 -11356329 + MIR SINE MIR 211 246 -16 22 0 0 0 chr4 172932387 172932409 -11356253 + AT_rich Low_complexity Low_complexity 1 22 0 240 322 239 6 chr4 172933894 172934074 -11354588 + MIR SINE MIR 35 256 -6 344 262 103 16 chr4 172934742 172935099 -11353563 - L1ME LINE L1 -428 5693 5304 2279 81 17 0 chr4 172935315 172935611 -11353051 - AluSc SINE Alu -2 307 7 22 35 0 0 chr4 172937581 172937610 -11351052 + AT_rich Low_complexity Low_complexity 1 29 0 33 0 0 0 chr4 172938013 172938046 -11350616 + AT_rich Low_complexity Low_complexity 1 33 0 1804 154 25 0 chr4 172940516 172940795 -11347867 - AluJb SINE Alu -26 286 1 234 343 27 14 chr4 172941114 172941260 -11347402 + MLT1I LTR MaLR 74 221 -188 265 270 0 45 chr4 172941380 172941469 -11347193 + MLT1I LTR MaLR 315 399 -10 2206 92 0 23 chr4 172941716 172942021 -11346641 - AluSx SINE Alu -14 298 1 975 259 102 48 chr4 172942324 172942826 -11345836 + MLT1F LTR MaLR 1 529 -13 369 336 61 36 chr4 172942839 172943086 -11345576 - L1MEd LINE L1 -4951 1168 916 2398 91 0 0 chr4 172943587 172943895 -11344767 + AluY SINE Alu 1 308 -3 195 333 31 21 chr4 172944305 172944401 -11344261 + MIR SINE MIR 96 192 -70 219 114 0 0 chr4 172945107 172945142 -11343520 + (TAA)n Simple_repeat Simple_repeat 2 36 0 623 316 40 4 chr4 172946268 172946493 -11342169 - MIR SINE MIR -16 246 14 994 253 80 3 chr4 172946897 172947209 -11341453 + MLT1G LTR MaLR 235 570 -20 1181 246 125 35 chr4 172947326 172947633 -11341029 + MLT1D LTR MaLR 1 365 -140 1999 96 8 4 chr4 172947633 172947893 -11340769 + AluSq SINE Alu 39 299 -14 1181 246 125 35 chr4 172947893 172948048 -11340614 + MLT1D LTR MaLR 365 505 0 313 260 66 48 chr4 172948086 172948313 -11340349 + MLT1D-int LTR MaLR 311 541 -830 2049 113 11 0 chr4 172948614 172948897 -11339765 + AluSx SINE Alu 1 286 -26 251 278 159 60 chr4 172949208 172949359 -11339303 + MLT1D-int LTR MaLR 1023 1188 -183 1290 172 12 49 chr4 172949420 172949664 -11338998 - AluJb SINE Alu -28 284 50 685 183 24 61 chr4 172949938 172950102 -11338560 - AluSg/x SINE Alu -18 294 137 1816 159 6 13 chr4 172950755 172951069 -11337593 + AluJo SINE Alu 1 312 0 2807 74 26 0 chr4 172952340 172952718 -11335944 - L1PA7 LINE L1 -3 6151 5764 193 327 0 0 chr4 172953198 172953253 -11335409 - L2 LINE L2 -13 3300 3246 2356 154 27 0 chr4 172953382 172953814 -11334848 + L1PA16 LINE L1 5743 6185 0 21 0 0 0 chr4 172953828 172953849 -11334813 + AT_rich Low_complexity Low_complexity 1 21 0 300 176 68 0 chr4 172953974 172954048 -11334614 - L1M LINE L1 -2622 5373 5295 1906 128 11 4 chr4 172954244 172954549 -11334113 + AluSx SINE Alu 1 307 0 250 378 0 0 chr4 172955882 172955972 -11332690 - L2 LINE L2 0 3313 3224 511 103 26 0 chr4 172955998 172956076 -11332586 - MADE1 DNA Mariner 0 80 1 707 303 66 5 chr4 172956369 172956580 -11332082 - MIR SINE MIR -37 225 2 253 244 26 122 chr4 172956609 172956765 -11331897 - MIR SINE MIR -56 206 66 3517 133 58 17 chr4 172957137 172957724 -11330938 - LTR9 LTR ERV1 0 612 2 4092 129 24 120 chr4 172957876 172959406 -11329256 + pTR5 LTR ERV1 743 2606 0 30 0 0 0 chr4 172959715 172959745 -11328917 + AT_rich Low_complexity Low_complexity 1 30 0 1896 127 25 18 chr4 172959745 172960029 -11328633 - AluSq SINE Alu -27 286 1 21 0 0 0 chr4 172960196 172960217 -11328445 + AT_rich Low_complexity Low_complexity 1 21 0 1240 228 31 59 chr4 172961932 172962252 -11326410 + AluJb SINE Alu 1 311 -1 745 170 102 7 chr4 172962262 172962409 -11326253 + AluJo SINE Alu 122 282 -30 217 113 0 38 chr4 172962576 172962629 -11326033 + (TTTTA)n Simple_repeat Simple_repeat 1 51 0 3958 171 27 8 chr4 172963455 172964163 -11324499 + MER72 LTR ERV1 2 722 0 332 311 74 0 chr4 172964446 172964594 -11324068 - MIR SINE MIR -58 204 46 428 259 25 43 chr4 172964682 172964844 -11323818 + Charlie8 DNA MER1_type 1 159 -2258 1445 198 16 48 chr4 172965629 172965942 -11322720 - AluJo SINE Alu -9 303 1 357 264 180 12 chr4 172966080 172966247 -11322415 + MIR SINE MIR 12 206 -56 27 0 0 0 chr4 172966345 172966372 -11322290 + AT_rich Low_complexity Low_complexity 1 27 0 417 235 95 84 chr4 172966747 172966926 -11321736 - MIR SINE MIR -81 181 1 1103 198 9 22 chr4 172967077 172967299 -11321363 + MER20 DNA MER1_type 1 219 0 291 343 20 25 chr4 172967715 172967919 -11320743 + L1MEd LINE L1 523 725 -5394 1649 197 77 34 chr4 172969738 172970180 -11318482 - MLT1C LTR MaLR 0 467 7 2317 109 0 3 chr4 172970929 172971232 -11317430 + AluSc SINE Alu 1 302 -7 486 33 0 0 chr4 172971233 172971293 -11317369 + (CA)n Simple_repeat Simple_repeat 1 60 0 180 0 0 0 chr4 172971307 172971327 -11317335 + (CAAAAA)n Simple_repeat Simple_repeat 4 23 0 243 0 0 0 chr4 172972371 172972398 -11316264 + (TG)n Simple_repeat Simple_repeat 2 28 0 216 0 0 0 chr4 172972706 172972730 -11315932 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 343 281 61 35 chr4 172973202 172973316 -11315346 - L2 LINE L2 -8 3305 3189 496 286 61 0 chr4 172973330 172973543 -11315119 + HAL1 LINE L1 1392 1617 -890 200 159 0 23 chr4 172973784 172973828 -11314834 + (CA)n Simple_repeat Simple_repeat 2 44 0 214 309 71 71 chr4 172974139 172974349 -11314313 - MIR SINE MIR -21 241 32 590 220 95 43 chr4 172974646 172974864 -11313798 - MIR SINE MIR -9 253 25 536 322 73 28 chr4 172975069 172975358 -11313304 - L3 LINE CR1 -1 1576 1275 184 319 120 97 chr4 172975385 172975571 -11313091 - L3 LINE CR1 -401 1176 983 1775 182 7 0 chr4 172975571 172975868 -11312794 + AluSx SINE Alu 1 299 -13 184 319 120 97 chr4 172975868 172975897 -11312765 - L3 LINE CR1 -594 983 956 246 259 9 65 chr4 172975922 172976030 -11312632 + MIR SINE MIR 161 262 0 233 324 45 9 chr4 172976071 172976182 -11312480 - L3 LINE CR1 -838 739 625 717 253 119 48 chr4 172976444 172976840 -11311822 - MLT1C LTR MaLR 0 467 44 201 385 78 28 chr4 172976917 172977317 -11311345 - L3b LINE CR1 -53 1530 1111 597 286 74 23 chr4 172977333 172977550 -11311112 + MIR SINE MIR 20 247 -15 299 195 26 0 chr4 172977694 172977771 -11310891 + CT-rich Low_complexity Low_complexity 3 81 0 351 182 15 0 chr4 172979155 172979221 -11309441 + Tigger2 DNA MER2_type 1 67 -2651 * 2411 148 26 29 chr4 172979207 172979429 -11309233 + Tigger2 DNA MER2_type 2267 2488 -230 2002 106 77 0 chr4 172979429 172979703 -11308959 - AluSx SINE Alu -17 295 1 2411 148 26 29 chr4 172979703 172979933 -11308729 + Tigger2 DNA MER2_type 2488 2718 0 315 320 90 51 chr4 172979933 172980189 -11308473 + L1MEd LINE L1 978 1243 -4876 25 31 0 0 chr4 172980672 172980704 -11307958 + AT_rich Low_complexity Low_complexity 1 32 0 31 68 0 0 chr4 172980820 172980879 -11307783 + AT_rich Low_complexity Low_complexity 1 59 0 2357 82 0 3 chr4 172980885 172981177 -11307485 - AluY SINE Alu -20 291 1 26 64 0 0 chr4 172981187 172981234 -11307428 + AT_rich Low_complexity Low_complexity 1 47 0 25 80 0 30 chr4 172981323 172981423 -11307239 + AT_rich Low_complexity Low_complexity 1 97 0 374 295 52 65 chr4 172981424 172981864 -11306798 + L1MEd LINE L1 2577 3009 -3120 411 21 0 0 chr4 172981864 172981912 -11306750 + (TG)n Simple_repeat Simple_repeat 2 49 0 374 295 52 65 chr4 172981912 172982054 -11306608 + L1MEd LINE L1 3009 3151 -2978 5215 125 23 0 chr4 172982108 172983444 -11305218 + L1PBa LINE L1 634 2129 -4734 325 243 0 75 chr4 172983449 172983556 -11305106 - L1MC4 LINE L1 -1340 6702 6604 259 203 27 0 chr4 172983558 172983632 -11305030 + (CATA)n Simple_repeat Simple_repeat 2 77 0 2577 101 8 0 chr4 172983649 172984015 -11304647 + L1PB1 LINE L1 5782 6150 -1 332 311 104 32 chr4 172984016 172984363 -11304299 + L1MEd LINE L1 3306 3677 -2452 32 26 0 0 chr4 172984375 172984414 -11304248 + AT_rich Low_complexity Low_complexity 1 39 0 606 301 131 16 chr4 172984425 172984861 -11303801 + L1MEd LINE L1 3715 4200 -1929 2086 286 67 40 chr4 172984948 172986002 -11302660 + L2 LINE L2 2066 3142 -171 21 0 0 0 chr4 172986067 172986088 -11302574 + AT_rich Low_complexity Low_complexity 1 21 0 214 193 26 18 chr4 172986098 172986212 -11302450 + (TA)n Simple_repeat Simple_repeat 2 116 0 26 30 0 0 chr4 172987428 172987461 -11301201 + AT_rich Low_complexity Low_complexity 1 33 0 254 335 24 12 chr4 172987562 172987732 -11300930 - ERVL LTR ERVL -427 5337 5166 412 345 82 18 chr4 172987959 172988287 -11300375 - ERVL LTR ERVL -2930 2834 2486 348 64 0 0 chr4 172988384 172988431 -11300231 + (TG)n Simple_repeat Simple_repeat 2 48 0 562 128 17 0 chr4 172988431 172988548 -11300114 + (TAGA)n Simple_repeat Simple_repeat 4 122 0 224 233 14 0 chr4 172988564 172988637 -11300025 + (TA)n Simple_repeat Simple_repeat 1 74 0 499 327 77 56 chr4 172989165 172989485 -11299177 - ERVL LTR ERVL -3926 1838 1526 1793 213 16 21 chr4 172989485 172989861 -11298801 - MLT1A2 LTR MaLR 0 374 1 499 327 77 56 chr4 172989861 172990278 -11298384 - ERVL LTR ERVL -4238 1526 1085 1499 201 40 0 chr4 172990908 172991182 -11297480 - AluJb SINE Alu -27 285 1 233 246 16 0 chr4 172991616 172991677 -11296985 - LTR67 LTR ERVL 0 557 496 1576 137 30 48 chr4 172992496 172992767 -11295895 + AluSx SINE Alu 6 271 -41 204 40 0 0 chr4 172992780 172992805 -11295857 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 210 380 70 8 chr4 172993728 172993857 -11294805 + L2 LINE L2 3162 3298 -15 404 322 101 82 chr4 172993881 172994602 -11294060 + L2 LINE L2 1768 2502 -812 1997 111 70 25 chr4 172994850 172995209 -11293453 + THE1C LTR MaLR 1 375 0 224 308 131 9 chr4 172997748 172997855 -11290807 + MIR3 SINE MIR 37 156 -52 339 297 48 37 chr4 172997920 172998189 -11290473 + L1M4 LINE L1 4787 5058 -1088 28 0 0 0 chr4 172998261 172998289 -11290373 + AT_rich Low_complexity Low_complexity 1 28 0 435 355 81 58 chr4 172999148 172999289 -11289373 + L2 LINE L2 1511 1647 -1667 643 209 49 93 chr4 172999289 172999514 -11289148 + MER20 DNA MER1_type 2 216 -3 435 355 81 58 chr4 172999514 173000304 -11288358 + L2 LINE L2 1647 2463 -851 2004 173 8 19 chr4 173000353 173000620 -11288042 - MER47A DNA MER2_type -1957 366 103 2556 123 46 10 chr4 173000620 173001033 -11287629 - MSTA LTR MaLR 0 428 1 2004 173 8 19 chr4 173001033 173001134 -11287528 - MER47A DNA MER2_type -2220 103 2 218 284 136 45 chr4 173001147 173001323 -11287339 + L2 LINE L2 2552 2743 -571 343 344 46 83 chr4 173001589 173001891 -11286771 + L2 LINE L2 2980 3270 -2 228 318 0 11 chr4 173002377 173002465 -11286197 - MER103 DNA DNA -78 88 2 21 0 0 0 chr4 173002742 173002763 -11285899 + AT_rich Low_complexity Low_complexity 1 21 0 372 329 94 6 chr4 173002949 173003119 -11285543 - MIR3 SINE MIR -4 204 20 228 250 135 48 chr4 173004537 173004641 -11284021 - L2 LINE L2 -9 3304 3192 350 360 49 16 chr4 173005099 173005346 -11283316 + LTR16C LTR ERVL 237 491 0 694 32 0 21 chr4 173005550 173005645 -11283017 + (GAAA)n Simple_repeat Simple_repeat 4 96 0 290 364 57 17 chr4 173006596 173006772 -11281890 + LTR33 LTR ERVL 25 207 -314 237 276 13 13 chr4 173007054 173007130 -11281532 + LTR33A LTR ERVL 448 523 0 260 336 9 35 chr4 173010949 173011062 -11277600 + LTR67 LTR ERVL 91 200 -357 295 304 120 38 chr4 173011152 173011310 -11277352 + LTR67 LTR ERVL 347 517 -40 2734 185 61 30 chr4 173012750 173013377 -11275285 + L1MB8 LINE L1 5531 6176 -2 2334 107 3 0 chr4 173013431 173013763 -11274899 + AluSx SINE Alu 1 333 0 312 327 119 22 chr4 173013827 173014105 -11274557 - MLT1J LTR MaLR -179 332 28 396 266 79 29 chr4 173016540 173016679 -11271983 + MER39 LTR ERV1 11 156 -551 * 1440 209 138 15 chr4 173016653 173017050 -11271612 + MER39 LTR ERV1 262 707 0 196 318 12 12 chr4 173017820 173017905 -11270757 + MIR SINE MIR 16 100 -108 276 302 47 0 chr4 173017954 173018060 -11270602 - MIR SINE MIR -54 208 98 2166 125 7 0 chr4 173018143 173018447 -11270215 + AluSx SINE Alu 1 306 -6 600 313 100 4 chr4 173019156 173019396 -11269266 - LTR33 LTR ERVL -258 263 1 2380 84 0 7 chr4 173019660 173019968 -11268694 + AluSc SINE Alu 1 306 -3 236 253 32 95 chr4 173020598 173020693 -11267969 - L3b LINE CR1 -80 1503 1415 382 235 101 27 chr4 173021849 173021998 -11266664 + MER5A DNA MER1_type 4 163 -26 1452 95 0 18 chr4 173023215 173023437 -11265225 + L1PA8 LINE L1 5953 6170 -2 24 53 0 0 chr4 173025060 173025098 -11263564 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr4 173025853 173025875 -11262787 + AT_rich Low_complexity Low_complexity 1 22 0 714 295 41 28 chr4 173026110 173026619 -11262043 - L1ME LINE L1 -5022 1183 668 284 273 86 41 chr4 173027059 173027374 -11261288 - L1ME LINE L1 -6014 382 54 195 306 125 0 chr4 173028590 173028662 -11260000 + MIR3 SINE MIR 115 195 -13 336 340 0 0 chr4 173028799 173028896 -11259766 - L2 LINE L2 -8 3264 3168 2383 29 7 0 chr4 173029512 173029811 -11258851 + AluY SINE Alu 1 301 0 7282 177 33 26 chr4 173029914 173032377 -11256285 - L1MB1 LINE L1 0 6754 4274 301 252 28 49 chr4 173032399 173032542 -11256120 - L1MB1 LINE L1 -4953 1700 1561 717 292 18 18 chr4 173032556 173032775 -11255887 - L1MB1 LINE L1 -5668 985 767 302 320 49 16 chr4 173033016 173033138 -11255524 - MLT1K LTR MaLR -315 273 148 225 276 97 7 chr4 173033321 173033466 -11255196 + L1ME LINE L1 5738 5895 -226 22 0 0 0 chr4 173033595 173033617 -11255045 + AT_rich Low_complexity Low_complexity 1 22 0 524 282 50 30 chr4 173035245 173035447 -11253215 - MIR SINE MIR -26 236 31 1220 274 66 49 chr4 173038005 173038534 -11250128 + MLT1F LTR MaLR 3 540 -2 270 81 0 0 chr4 173041725 173041762 -11246900 + (TTTTC)n Simple_repeat Simple_repeat 4 40 0 402 332 146 20 chr4 173041792 173042039 -11246623 + MIR SINE MIR 2 261 -1 210 278 28 14 chr4 173043073 173043145 -11245517 + L2 LINE L2 3196 3268 -4 2328 92 3 3 chr4 173043426 173043729 -11244933 - AluSg SINE Alu -7 303 1 348 127 0 0 chr4 173044142 173044197 -11244465 + (A)n Simple_repeat Simple_repeat 1 55 0 180 0 0 0 chr4 173045005 173045025 -11243637 + (T)n Simple_repeat Simple_repeat 1 20 0 397 365 29 5 chr4 173045445 173045653 -11243009 + LTR16A LTR ERVL 148 360 -90 350 364 17 23 chr4 173045715 173045888 -11242774 + HERV16 LTR ERVL 7 178 -4818 594 358 42 7 chr4 173045994 173046279 -11242383 + HERV16 LTR ERVL 318 612 -4384 524 205 17 17 chr4 173046282 173046399 -11242263 - L1MC1 LINE L1 0 6333 6217 548 195 124 0 chr4 173046692 173046805 -11241857 + FLAM_C SINE Alu 1 127 -6 324 300 44 39 chr4 173046931 173047111 -11241551 + HERVL LTR ERVL 2494 2674 -3090 594 312 16 17 chr4 173047150 173047479 -11241183 + HERVL LTR ERVL 2656 3032 -1964 383 345 48 20 chr4 173047539 173047791 -11240871 + HERVL LTR ERVL 4610 4868 -786 270 282 128 39 chr4 173047839 173047964 -11240698 - MIR SINE MIR -19 243 131 1952 147 0 24 chr4 173047964 173048257 -11240405 + AluJo SINE Alu 1 286 -26 186 43 0 0 chr4 173048257 173048280 -11240382 + (GGGAA)n Simple_repeat Simple_repeat 4 26 0 270 282 128 39 chr4 173048280 173048309 -11240353 - MIR SINE MIR -130 132 74 599 298 53 32 chr4 173048708 173048990 -11239672 - ERVL LTR ERVL -3064 2700 2413 307 235 25 12 chr4 173048997 173049078 -11239584 - MIR SINE MIR -61 201 120 231 323 108 30 chr4 173049231 173049398 -11239264 - MIR SINE MIR -74 188 9 906 228 40 0 chr4 173049434 173049636 -11239026 + MER82 DNA MER2_type 444 653 0 21 0 0 0 chr4 173050336 173050357 -11238305 + AT_rich Low_complexity Low_complexity 1 21 0 632 302 66 60 chr4 173050437 173050904 -11237758 - ERVL LTR ERVL -3972 1792 1323 22 0 0 0 chr4 173052412 173052434 -11236228 + AT_rich Low_complexity Low_complexity 1 22 0 212 289 163 67 chr4 173052480 173052615 -11236047 + L2 LINE L2 3164 3311 -2 457 256 141 11 chr4 173053813 173054004 -11234658 - LTR16C LTR ERVL 0 491 276 3149 167 118 21 chr4 173054006 173054712 -11233950 + L1MA6 LINE L1 5510 6283 -17 21 36 0 0 chr4 173054716 173054744 -11233918 + AT_rich Low_complexity Low_complexity 1 28 0 273 293 49 12 chr4 173054774 173054856 -11233806 - LTR16C LTR ERVL -242 249 165 697 295 59 0 chr4 173055323 173055560 -11233102 - MIR SINE MIR -10 252 2 24 32 0 0 chr4 173056230 173056261 -11232401 + AT_rich Low_complexity Low_complexity 1 31 0 769 276 114 38 chr4 173057830 173058279 -11230383 - L1MC4a LINE L1 -1653 6155 5673 765 282 57 16 chr4 173059154 173059402 -11229260 + MIR SINE MIR 2 259 -3 21 0 0 0 chr4 173060594 173060615 -11228047 + AT_rich Low_complexity Low_complexity 1 21 0 3855 198 42 19 chr4 173061041 173062262 -11226400 - L1MB7 LINE L1 -11 6173 4915 1476 233 103 43 chr4 173062369 173062855 -11225807 - LTR40a LTR ERVL -4 515 1 1596 173 28 11 chr4 173063268 173063551 -11225111 - AluJo SINE Alu -15 297 10 189 0 0 0 chr4 173063707 173063728 -11224934 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 216 0 0 0 chr4 173064605 173064629 -11224033 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 546 192 48 0 chr4 173064634 173064738 -11223924 - FLAM_A SINE Alu -33 109 1 763 267 70 23 chr4 173066276 173066673 -11221989 - L1MB7 LINE L1 -2399 3747 3332 783 231 106 24 chr4 173066687 173067122 -11221540 - MLT1F1 LTR MaLR -8 559 16 2629 234 134 9 chr4 173067130 173067183 -11221479 - L1MB7 LINE L1 -2826 3320 3275 306 0 0 0 chr4 173067183 173067217 -11221445 + (TG)n Simple_repeat Simple_repeat 1 34 0 2629 234 134 9 chr4 173067217 173068174 -11220488 - L1MB7 LINE L1 -2871 3275 2183 1623 150 4 0 chr4 173068219 173068459 -11220203 + AluSx SINE Alu 1 241 -71 808 147 0 39 chr4 173068459 173068588 -11220074 + AluSg/x SINE Alu 157 280 -30 321 26 0 0 chr4 173068588 173068626 -11220036 + (GA)n Simple_repeat Simple_repeat 2 39 0 331 183 17 0 chr4 173068872 173068932 -11219730 - MER58A DNA MER1_type 0 224 164 1824 253 120 38 chr4 173069447 173070402 -11218260 - L1MCc LINE L1 -4102 3020 1938 2049 147 0 3 chr4 173070402 173070715 -11217947 - AluSx SINE Alu 0 312 1 1824 253 120 38 chr4 173070715 173070999 -11217663 - L1MCc LINE L1 -5184 1938 1679 2618 234 68 60 chr4 173071034 173071356 -11217306 + MER21B LTR ERV1 15 333 -530 2483 40 20 3 chr4 173071356 173071657 -11217005 + AluY SINE Alu 1 306 -5 2618 234 68 60 chr4 173071657 173072132 -11216530 + MER21B LTR ERV1 333 818 -45 424 261 29 6 chr4 173072169 173072333 -11216329 - L1MCc LINE L1 -4973 1450 1284 389 295 55 22 chr4 173072402 173072585 -11216077 - L1MCc LINE L1 -6172 950 762 210 91 0 0 chr4 173072644 173072677 -11215985 + (TA)n Simple_repeat Simple_repeat 2 34 0 688 306 11 0 chr4 173072797 173072977 -11215685 + MIR SINE MIR 6 187 -75 306 250 24 0 chr4 173073022 173073106 -11215556 + MIR SINE MIR 104 189 -73 326 315 120 27 chr4 173073709 173074001 -11214661 - MLT1H LTR MaLR -230 319 1 253 302 114 34 chr4 173074233 173074382 -11214280 + MIR SINE MIR 17 177 -85 1135 200 0 29 chr4 173074475 173074685 -11213977 - MER58A DNA MER1_type -17 207 4 235 357 43 21 chr4 173074699 173074839 -11213823 + L2 LINE L2 3129 3271 -1 262 188 21 0 chr4 173076421 173076469 -11212193 - MER20 DNA MER1_type -8 211 163 1049 90 0 28 chr4 173076469 173076638 -11212024 + AluSp SINE Alu 144 308 0 1274 271 118 45 chr4 173076709 173077316 -11211346 - L2 LINE L2 -611 2703 2043 1943 61 0 0 chr4 173077316 173077563 -11211099 + L1PA5 LINE L1 5906 6152 -2 1274 271 118 45 chr4 173077563 173077616 -11211046 - L2 LINE L2 -1271 2043 1995 478 268 58 34 chr4 173078390 173078681 -11209981 + L1MEd LINE L1 920 1217 -4902 24 32 0 0 chr4 173078768 173078799 -11209863 + AT_rich Low_complexity Low_complexity 1 31 0 456 279 189 21 chr4 173078840 173079120 -11209542 + L1MEd LINE L1 1303 1629 -4500 21 0 0 0 chr4 173079370 173079391 -11209271 + AT_rich Low_complexity Low_complexity 1 21 0 1431 318 238 15 chr4 173079492 173080498 -11208164 - L2 LINE L2 -1307 2007 778 181 414 23 23 chr4 173083553 173083634 -11205028 - L2 LINE L2 -8 3264 3144 201 158 0 26 chr4 173083634 173083672 -11204990 - MER5B DNA MER1_type -61 117 81 1975 110 0 0 chr4 173083694 173083957 -11204705 + AluSq SINE Alu 1 263 -50 231 167 0 0 chr4 173083977 173084019 -11204643 + (TATATG)n Simple_repeat Simple_repeat 1 42 0 22 88 0 0 chr4 173084851 173084908 -11203754 + AT_rich Low_complexity Low_complexity 1 57 0 709 238 24 0 chr4 173084967 173085131 -11203531 - MIR SINE MIR -78 184 17 218 296 263 4 chr4 173085283 173085526 -11203136 + L2 LINE L2 3008 3313 0 24 32 0 0 chr4 173086893 173086924 -11201738 + AT_rich Low_complexity Low_complexity 1 31 0 7369 68 6 2 chr4 173086937 173088693 -11199969 - L1PA7 LINE L1 -1 6153 4386 563 200 17 0 chr4 173088693 173088805 -11199857 + L1MA10 LINE L1 6201 6322 -12 30 0 0 0 chr4 173088808 173088838 -11199824 + AT_rich Low_complexity Low_complexity 1 30 0 252 171 0 0 chr4 173089105 173089146 -11199516 - L1M3 LINE L1 -614 5554 5514 1984 169 63 0 chr4 173089500 173089879 -11198783 - MER57A LTR ERV1 0 403 1 1185 174 28 0 chr4 173090234 173090446 -11198216 - AluJb SINE Alu 0 312 95 675 284 54 48 chr4 173091539 173091870 -11196792 - MER97a DNA MER1_type? -448 446 114 331 310 76 16 chr4 173092506 173092690 -11195972 + MIR SINE MIR 13 207 -55 192 152 0 0 chr4 173093344 173093377 -11195285 + (TCCA)n Simple_repeat Simple_repeat 1 33 0 22 35 0 0 chr4 173093698 173093727 -11194935 + AT_rich Low_complexity Low_complexity 1 29 0 247 288 17 0 chr4 173094065 173094124 -11194538 - MER91B DNA MER1_type -127 63 4 2717 165 45 28 chr4 173094221 173094387 -11194275 - L1MB7 LINE L1 -17 6167 6005 1603 229 65 41 chr4 173094387 173094880 -11193782 + MLT1D LTR MaLR 1 505 0 2717 165 45 28 chr4 173094880 173095294 -11193368 - L1MB7 LINE L1 -179 6005 5577 289 288 0 0 chr4 173095295 173095368 -11193294 - Tigger5 DNA MER2_type 0 2323 2251 * 318 218 0 0 chr4 173095337 173095392 -11193270 - Tigger5 DNA MER2_type -2268 55 1 3936 193 40 49 chr4 173095392 173096562 -11192100 - L1MB7 LINE L1 -607 5577 4428 1798 168 32 0 chr4 173096562 173096847 -11191815 - AluSx SINE Alu -16 296 3 3936 193 40 49 chr4 173096847 173097062 -11191600 - L1MB7 LINE L1 -1756 4428 4212 325 216 58 101 chr4 173097054 173097262 -11191400 - L1MB7 LINE L1 -2873 3273 3075 * 2257 108 3 13 chr4 173097267 173097582 -11191080 - AluSx SINE Alu 0 312 1 793 222 42 0 chr4 173097591 173097803 -11190859 - L1MB7 LINE L1 -3288 2858 2638 293 302 86 50 chr4 173097863 173098085 -11190577 + L1MC/D LINE L1 5352 5581 -2227 438 250 52 0 chr4 173099002 173099138 -11189524 + LTR67 LTR ERVL 408 550 -7 190 304 64 72 chr4 173100268 173100393 -11188269 + L2 LINE L2 2404 2527 -787 207 69 0 0 chr4 173101433 173101462 -11187200 + (TGG)n Simple_repeat Simple_repeat 3 31 0 895 246 6 11 chr4 173102599 173102774 -11185888 - MER5A DNA MER1_type -15 174 1 358 253 0 0 chr4 173102970 173103045 -11185617 - L2 LINE L2 -5 3308 3234 22 56 0 0 chr4 173103920 173103956 -11184706 + AT_rich Low_complexity Low_complexity 1 36 0 398 321 32 18 chr4 173103971 173104345 -11184317 + L1ME LINE L1 3840 4217 -1929 291 173 0 0 chr4 173104412 173104464 -11184198 + LTR52 LTR ERVL 1 52 -369 405 185 134 42 chr4 173104474 173104593 -11184069 - L1MA7 LINE L1 -2 6289 6160 30 27 0 0 chr4 173104656 173104693 -11183969 + AT_rich Low_complexity Low_complexity 1 37 0 1076 245 80 20 chr4 173104708 173105010 -11183652 + LTR52 LTR ERVL 100 419 -2 2423 87 0 0 chr4 173105175 173105475 -11183187 - AluSc SINE Alu -9 300 1 1976 267 71 9 chr4 173105821 173106483 -11182179 + L1MEc LINE L1 32 734 -5662 398 282 58 53 chr4 173106640 173106828 -11181834 - MER5A DNA MER1_type 0 189 1 542 273 18 0 chr4 173107382 173107492 -11181170 + MER81 DNA DNA 2 113 -1 936 178 0 0 chr4 173107657 173107837 -11180825 + CT-rich Low_complexity Low_complexity 1 180 0 4286 158 37 78 chr4 173109530 173109677 -11178985 - L1MA9 LINE L1 -5 6307 6156 330 45 0 0 chr4 173109677 173109721 -11178941 + (TG)n Simple_repeat Simple_repeat 1 44 0 4286 158 37 78 chr4 173109721 173110526 -11178136 - L1MA9 LINE L1 -156 6156 5394 4872 118 49 8 chr4 173110530 173111531 -11177131 + LTR12 LTR ERV1 57 714 0 6107 189 43 36 chr4 173111533 173112620 -11176042 - L1MA9 LINE L1 -751 5395 4292 2089 122 0 3 chr4 173112620 173112906 -11175756 + AluSc SINE Alu 13 297 -12 6107 189 43 36 chr4 173112906 173113320 -11175342 - L1MA9 LINE L1 -1854 4292 3883 2733 10 7 0 chr4 173113427 173113727 -11174935 + AluYa5 SINE Alu 1 302 -9 420 297 93 31 chr4 173114726 173114851 -11173811 + L1ME LINE L1 4839 4955 -1191 3189 95 9 5 chr4 173114851 173115293 -11173369 + MLT2A1 LTR ERVL 1 444 0 420 297 93 31 chr4 173115293 173115633 -11173029 + L1ME LINE L1 4955 5396 -750 394 242 71 102 chr4 173115640 173115962 -11172700 + L1ME LINE L1 5485 5796 -366 27 29 0 0 chr4 173116259 173116293 -11172369 + AT_rich Low_complexity Low_complexity 1 34 0 596 240 67 63 chr4 173116512 173116875 -11171787 + Charlie8 DNA MER1_type 5 357 -2060 237 294 15 0 chr4 173116874 173116942 -11171720 + Charlie8 DNA MER1_type 1360 1428 -989 * 2405 54 7 0 chr4 173116944 173117239 -11171423 - AluY SINE Alu -14 297 1 21 0 0 0 chr4 173117250 173117271 -11171391 + AT_rich Low_complexity Low_complexity 1 21 0 7207 55 2 2 chr4 173118110 173119325 -11169337 - L1PA5 LINE L1 -1 6153 4939 875 196 61 57 chr4 173120548 173120828 -11167834 - L1MA9 LINE L1 0 6312 6032 322 301 12 0 chr4 173121109 173121192 -11167470 + MIR SINE MIR 19 102 -160 21 0 0 0 chr4 173121259 173121280 -11167382 + AT_rich Low_complexity Low_complexity 1 21 0 45 75 0 0 chr4 173121330 173121424 -11167238 + AT_rich Low_complexity Low_complexity 1 94 0 821 327 137 30 chr4 173121657 173122535 -11166127 - L2 LINE L2 -673 2641 1670 1772 154 21 11 chr4 173122869 173123155 -11165507 + MER1B DNA MER1_type 51 339 0 1575 163 52 79 chr4 173123264 173123668 -11164994 - L1MC3 LINE L1 -172 7613 7221 355 271 0 28 chr4 173123688 173123795 -11164867 - MLT1F1 LTR MaLR -443 124 21 2661 30 0 0 chr4 173123897 173124199 -11164463 + AluY SINE Alu 1 302 -9 1322 171 40 7 chr4 173124199 173124600 -11164062 - L1MC/D LINE L1 -745 5819 5447 * 5074 171 20 24 chr4 173124583 173124980 -11163682 - L1PA16 LINE L1 -5 6161 5764 2513 58 3 6 chr4 173124980 173125292 -11163370 - AluY SINE Alu 0 311 1 5074 171 20 24 chr4 173125292 173126817 -11161845 - L1PA16 LINE L1 -402 5764 4250 4303 241 61 13 chr4 173126797 173128140 -11160522 - L1MC/D LINE L1 -1103 5461 4054 * 1852 242 88 29 chr4 173128146 173129799 -11158863 - L1MCa LINE L1 -3534 3030 1163 * 10621 204 50 11 chr4 173129794 173133261 -11155401 - L1PB4 LINE L1 -1 6155 2551 3423 263 51 23 chr4 173133305 173134349 -11154313 - L1MCa LINE L1 -4970 1075 3 2191 114 0 0 chr4 173134419 173134716 -11153946 - AluSx SINE Alu -15 297 1 22 56 0 0 chr4 173137243 173137279 -11151383 + AT_rich Low_complexity Low_complexity 1 36 0 189 0 0 0 chr4 173138360 173138381 -11150281 + (TTTTC)n Simple_repeat Simple_repeat 3 23 0 1560 174 11 8 chr4 173138402 173138667 -11149995 - AluJb SINE Alu -42 270 5 22 0 0 0 chr4 173138715 173138737 -11149925 + AT_rich Low_complexity Low_complexity 1 22 0 633 259 35 0 chr4 173139582 173139752 -11148910 - MIR SINE MIR -20 242 67 531 340 76 45 chr4 173140133 173140709 -11147953 + L1 LINE L1 3690 4283 -1863 743 200 0 0 chr4 173140807 173140942 -11147720 - MLT1A1 LTR MaLR 0 365 231 718 145 8 38 chr4 173140948 173141079 -11147583 - AluJb SINE Alu -184 128 2 1110 156 21 16 chr4 173141171 173141363 -11147299 - MLT1A1 LTR MaLR -172 193 1 209 356 55 0 chr4 173141670 173141743 -11146919 - L2 LINE L2 -36 3236 3160 22 56 0 0 chr4 173141986 173142022 -11146640 + AT_rich Low_complexity Low_complexity 1 36 0 215 313 83 0 chr4 173144813 173144909 -11143753 - MIR SINE MIR -73 189 86 526 325 208 11 chr4 173145599 173146074 -11142588 + L2 LINE L2 2746 3313 0 380 278 110 46 chr4 173146148 173146321 -11142341 - MIR SINE MIR -1 261 78 402 357 38 6 chr4 173146579 173146736 -11141926 + L2 LINE L2 3107 3268 -4 250 321 37 8 chr4 173148282 173148416 -11140246 + MARNA DNA Mariner 244 381 -205 191 263 113 25 chr4 173151273 173151353 -11137309 - MIR SINE MIR -148 114 28 297 164 0 110 chr4 173152409 173152482 -11136180 + L2 LINE L2 3249 3313 0 951 150 0 0 chr4 173152544 173152717 -11135945 + GA-rich Low_complexity Low_complexity 1 173 0 263 146 18 0 chr4 173154493 173154548 -11134114 + (CA)n Simple_repeat Simple_repeat 1 56 0 218 319 83 0 chr4 173154645 173154717 -11133945 - L2 LINE L2 -43 3229 3152 260 358 67 45 chr4 173155169 173155437 -11133225 - L2 LINE L2 -675 2639 2366 264 250 157 52 chr4 173156401 173156573 -11132089 - MLT1J LTR MaLR -84 427 238 539 285 95 34 chr4 173156790 173156905 -11131757 + L1MEc LINE L1 1930 2037 -4503 1639 172 72 26 chr4 173156905 173157254 -11131408 - MLT1A1 LTR MaLR 0 365 1 539 285 95 34 chr4 173157254 173157546 -11131116 + L1MEc LINE L1 2037 2276 -4264 228 326 43 0 chr4 173158208 173158300 -11130362 + L2 LINE L2 3185 3280 -33 226 411 75 0 chr4 173158507 173158614 -11130048 + L2 LINE L2 3149 3263 -9 2001 104 83 3 chr4 173159414 173159702 -11128960 + AluSx SINE Alu 1 311 -1 243 289 175 0 chr4 173160260 173160357 -11128305 - MIR SINE MIR -64 144 31 341 333 20 0 chr4 173160516 173160618 -11128044 - MER5A DNA MER1_type -77 112 9 4846 18 0 0 chr4 173161082 173161637 -11127025 - L1PA3 LINE L1 -2 6153 5599 2822 26 0 0 chr4 173161637 173162105 -11126557 + L1PA3 LINE L1 5126 5593 -562 1258 258 77 32 chr4 173163333 173163826 -11124836 - MLT1H LTR MaLR 0 549 35 195 42 0 0 chr4 173164182 173164206 -11124456 + (CA)n Simple_repeat Simple_repeat 1 24 0 2738 228 28 29 chr4 173164788 173166126 -11122536 - L1MB8 LINE L1 -188 6488 5150 546 238 21 32 chr4 173166115 173166304 -11122358 - L1MB8 LINE L1 -5005 1537 1351 * 306 214 0 56 chr4 173166561 173166650 -11122012 - L1MA9 LINE L1 -54 6258 6175 * 1000 195 84 18 chr4 173166640 173166866 -11121796 - L1MA9 LINE L1 -526 5786 5546 2205 243 28 3 chr4 173166866 173167438 -11121224 + L1 LINE L1 4762 5347 -799 2156 121 3 7 chr4 173168856 173169162 -11119500 + AluSx SINE Alu 3 307 -5 2219 92 0 0 chr4 173170168 173170452 -11118210 + AluSg1 SINE Alu 12 295 -14 463 335 29 0 chr4 173170668 173170907 -11117755 + HAL1b LINE L1 260 505 -843 321 262 143 0 chr4 173170979 173171147 -11117515 + L1ME3A LINE L1 5770 5961 -209 2110 121 4 0 chr4 173171402 173171705 -11116957 + AluSx SINE Alu 3 306 0 338 313 66 0 chr4 173171721 173171887 -11116775 + HAL1b LINE L1 695 871 -477 767 266 90 73 chr4 173172517 173173130 -11115532 + HAL1 LINE L1 1716 2338 -169 277 248 99 33 chr4 173173169 173173290 -11115372 - L2 LINE L2 -38 3275 3147 927 204 60 83 chr4 173173291 173173688 -11114974 + MLT2C1 LTR ERVL 10 397 0 255 239 33 22 chr4 173173712 173173804 -11114858 - L2 LINE L2 -192 3121 3029 327 286 24 16 chr4 173173806 173173932 -11114730 + MLT1H LTR MaLR 3 129 -420 365 214 40 156 chr4 173174117 173174341 -11114321 + MLT1H LTR MaLR 244 441 -108 1620 290 80 25 chr4 173174439 173175125 -11113537 - L2 LINE L2 -297 3016 2289 265 299 15 60 chr4 173175368 173175502 -11113160 + HAL1 LINE L1 2349 2476 -31 2238 54 32 51 chr4 173175809 173176122 -11112540 + AluY SINE Alu 1 307 -4 978 199 48 77 chr4 173176146 173176483 -11112179 - MLT1A1 LTR MaLR 0 365 39 250 255 122 96 chr4 173176675 173176863 -11111799 - L2 LINE L2 -1907 1407 1215 189 211 19 58 chr4 173177175 173177227 -11111435 - MIR SINE MIR -106 156 107 1553 226 86 67 chr4 173177268 173177790 -11110872 - MER34 LTR ERV1 0 542 11 2800 282 196 33 chr4 173179126 173180812 -11107850 - L2 LINE L2 -633 2681 721 261 0 0 0 chr4 173181738 173181767 -11106895 + (CA)n Simple_repeat Simple_repeat 2 30 0 408 288 148 3 chr4 173182837 173183130 -11105532 + L1MC5 LINE L1 7192 7495 -547 411 319 67 47 chr4 173183143 173183441 -11105221 + L1M4c LINE L1 294 597 -6049 1360 269 15 12 chr4 173183582 173183994 -11104668 + L1M4c LINE L1 828 1240 -5302 392 135 8 38 chr4 173184008 173184087 -11104575 + FLAM_A SINE Alu 66 125 -8 515 168 0 56 chr4 173184087 173184212 -11104450 + L1M4c LINE L1 1270 1387 -5259 1713 151 33 67 chr4 173184281 173184468 -11104194 + L1MB4 LINE L1 5803 5972 -208 1901 138 81 0 chr4 173184468 173184802 -11103860 - MER46B DNA MER2_type 0 236 1 1713 151 33 67 chr4 173184802 173185005 -11103657 + L1MB4 LINE L1 5972 6180 0 24 53 0 0 chr4 173185005 173185043 -11103619 + AT_rich Low_complexity Low_complexity 1 38 0 234 241 0 25 chr4 173185149 173185228 -11103434 + L1MC4 LINE L1 7877 7953 -89 326 324 27 34 chr4 173185610 173185758 -11102904 + L3 LINE CR1 336 482 -1095 628 214 124 22 chr4 173185772 173185950 -11102712 + MER58A DNA MER1_type 29 224 0 14109 120 56 10 chr4 173186077 173188389 -11100273 - Tigger1 DNA MER2_type 0 2418 1 2090 107 13 20 chr4 173188546 173188844 -11099818 + AluSx SINE Alu 1 296 -16 631 248 118 25 chr4 173188845 173189159 -11099503 + L1ME LINE L1 5383 5725 -445 1392 338 90 23 chr4 173189159 173190084 -11098578 - L2 LINE L2 -1152 2162 1176 965 286 92 42 chr4 173190080 173190349 -11098313 - L2 LINE L2 0 3313 3010 * 1961 91 4 0 chr4 173190349 173190601 -11098061 + AluSc SINE Alu 45 297 -12 965 286 92 42 chr4 173190601 173190785 -11097877 - L2 LINE L2 -303 3010 2837 350 315 158 5 chr4 173190817 173191020 -11097642 - L2 LINE L2 -2185 1129 896 1028 66 0 0 chr4 173191021 173191143 -11097519 + AluSp SINE Alu 1 122 -191 452 75 0 50 chr4 173191147 173191227 -11097435 + AluSp/q SINE Alu 238 313 0 579 306 78 16 chr4 173191227 173191482 -11097180 - L2 LINE L2 -2417 897 627 568 325 30 23 chr4 173191573 173191838 -11096824 + L1MC/D LINE L1 198 464 -6099 763 269 32 21 chr4 173191844 173192103 -11096559 + L1MC/D LINE L1 1628 2042 -4521 2288 87 0 0 chr4 173192268 173192554 -11096108 + AluSg1 SINE Alu 2 287 -22 422 288 139 53 chr4 173192885 173193260 -11095402 - L1M4 LINE L1 -2663 3483 3077 292 282 98 0 chr4 173194612 173194786 -11093876 + L1MC/D LINE L1 5410 5600 -782 366 318 48 39 chr4 173194800 173195034 -11093628 + L1MC/D LINE L1 5650 5883 -482 733 42 34 17 chr4 173195075 173195193 -11093469 - AluY SINE Alu -2 309 190 312 292 58 36 chr4 173195543 173195680 -11092982 + MER5B DNA MER1_type 37 176 -2 466 340 12 40 chr4 173195698 173195945 -11092717 + L2 LINE L2 2851 3090 -223 195 162 0 0 chr4 173196093 173196130 -11092532 + L2 LINE L2 3277 3313 0 324 315 138 10 chr4 173196554 173196757 -11091905 + MIR SINE MIR 7 235 -27 2227 111 3 3 chr4 173197116 173197422 -11091240 - AluSx SINE Alu -6 306 1 2038 103 14 3 chr4 173197613 173197904 -11090758 + AluSg SINE Alu 1 294 -16 3416 148 11 0 chr4 173198661 173199181 -11089481 - MER1A DNA MER1_type 0 527 2 2294 25 33 0 chr4 173200107 173200382 -11088280 + L1PA2 LINE L1 5846 6129 -26 357 93 0 0 chr4 173200386 173200440 -11088222 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 512 293 44 39 chr4 173201245 173201450 -11087212 + MIR SINE MIR 3 208 -54 270 322 144 8 chr4 173201490 173201608 -11087054 - MIR SINE MIR -127 135 2 260 343 9 19 chr4 173201706 173201811 -11086851 + L2 LINE L2 3159 3262 -10 1716 284 77 56 chr4 173202131 173202439 -11086223 + MER115 DNA AcHobo 33 333 -360 2032 128 7 0 chr4 173202439 173202759 -11085903 + AluSp SINE Alu 1 322 0 1716 284 77 56 chr4 173202759 173203096 -11085566 + MER115 DNA AcHobo 333 693 0 222 37 0 0 chr4 173203822 173203849 -11084813 + (GGAAA)n Simple_repeat Simple_repeat 4 30 0 226 341 81 19 chr4 173205261 173205472 -11083190 + MIR SINE MIR 23 246 -16 1331 124 60 0 chr4 173205838 173206055 -11082607 + MER30 DNA MER1_type 1 230 0 2139 201 87 57 chr4 173206380 173207048 -11081614 + MER76 LTR ERV 1 688 0 2298 103 0 0 chr4 173207857 173208158 -11080504 - AluSx SINE Alu -7 305 5 27 29 0 0 chr4 173209441 173209475 -11079187 + AT_rich Low_complexity Low_complexity 1 34 0 516 298 39 33 chr4 173210195 173210376 -11078286 - MIR SINE MIR -66 196 15 330 222 0 0 chr4 173210630 173210693 -11077969 + MIR3 SINE MIR 119 181 -27 22 0 0 0 chr4 173211551 173211573 -11077089 + AT_rich Low_complexity Low_complexity 1 22 0 252 0 0 0 chr4 173211624 173211652 -11077010 + (TA)n Simple_repeat Simple_repeat 1 28 0 319 182 15 0 chr4 173211735 173211801 -11076861 - L1 LINE L1 -2374 3772 3706 210 82 82 0 chr4 173211801 173211850 -11076812 + (TA)n Simple_repeat Simple_repeat 1 53 0 410 127 0 0 chr4 173211927 173211998 -11076664 - Tigger3(Golem) DNA MER2_type -2748 281 211 9100 186 23 27 chr4 173211999 173214305 -11074357 - L1PB4 LINE L1 -14 6142 3824 2047 137 0 3 chr4 173214305 173214598 -11074064 + AluSg SINE Alu 1 292 -18 9100 186 23 27 chr4 173214598 173215194 -11073468 - L1PB4 LINE L1 -2332 3824 3227 3814 210 30 8 chr4 173215196 173216077 -11072585 + L1 LINE L1 2242 3141 -3005 226 100 57 14 chr4 173216077 173216147 -11072515 + (TA)n Simple_repeat Simple_repeat 2 74 0 264 303 206 19 chr4 173216202 173216357 -11072305 + MIR SINE MIR 20 203 -59 398 319 19 13 chr4 173217043 173217200 -11071462 + MLT1I LTR MaLR 244 401 -8 378 343 82 5 chr4 173217211 173217418 -11071244 - Charlie7 DNA MER1_type -2237 375 153 197 240 20 0 chr4 173217421 173217471 -11071191 + MIR SINE MIR 101 151 -111 265 354 71 0 chr4 173217917 173218044 -11070618 - MIR SINE MIR -10 252 117 13265 199 38 10 chr4 173218140 173224912 -11063750 + L1PA16 LINE L1 1 6849 -20 2401 66 0 31 chr4 173224931 173225249 -11063413 + AluY SINE Alu 1 308 -3 410 319 44 24 chr4 173225277 173225555 -11063107 + L1ME LINE L1 5328 5616 -505 2268 112 0 6 chr4 173225555 173225869 -11062793 + AluSx SINE Alu 1 312 0 410 319 44 24 chr4 173225869 173225928 -11062734 + L1ME LINE L1 5616 5672 -449 24 91 0 0 chr4 173226113 173226179 -11062483 + AT_rich Low_complexity Low_complexity 1 66 0 277 319 15 52 chr4 173226840 173226975 -11061687 - LTR67 LTR ERVL -314 243 114 542 296 151 5 chr4 173227359 173227608 -11061054 - ERVL LTR ERVL -290 5403 5073 339 307 84 79 chr4 173227755 173228136 -11060526 + L1MEd LINE L1 557 939 -5180 649 133 0 10 chr4 173228312 173228410 -11060252 + MER4A LTR ERV1 1 97 -567 1701 111 167 96 chr4 173228411 173228788 -11059874 + MER4A LTR ERV1 261 664 0 4271 133 114 67 chr4 173228791 173229738 -11058924 + MER4A-int LTR ERV1 1 992 -5606 3129 129 65 17 chr4 173229739 173230260 -11058402 + MER41A LTR ERV1 1 546 -8 8960 111 144 119 chr4 173230262 173232627 -11056035 + MER4A-int LTR ERV1 983 3421 -3177 2067 152 0 0 chr4 173232627 173232930 -11055732 - AluSx SINE Alu -9 303 1 8960 111 144 119 chr4 173232930 173233193 -11055469 + MER4A-int LTR ERV1 3421 3676 -2922 * 15512 110 46 41 chr4 173233191 173235958 -11052704 + MER4A-int LTR ERV1 3815 6596 -2 627 141 0 10 chr4 173235962 173236061 -11052601 + MER4A LTR ERV1 1 98 -566 1763 134 159 73 chr4 173236061 173236433 -11052229 + MER4A LTR ERV1 261 664 0 928 189 0 71 chr4 173236572 173236784 -11051878 + MER52A LTR ERV1 1 197 -1558 3633 92 10 12 chr4 173236784 173237296 -11051366 - MER9 LTR ERVK 0 511 1 39143 86 15 15 chr4 173237296 173242476 -11046186 - HERVK9 LTR ERVK 0 8032 775 187 218 0 91 chr4 173242476 173242531 -11046131 - MER5B DNA MER1_type -69 109 60 39143 86 15 15 chr4 173242531 173243307 -11045355 - HERVK9 LTR ERVK -7257 775 1 3264 112 22 14 chr4 173243307 173243814 -11044848 - MER9 LTR ERVK 0 511 1 6405 170 65 26 chr4 173243814 173245172 -11043490 + MER52A LTR ERV1 282 1754 -1 319 138 52 17 chr4 173245173 173245231 -11043431 - L2 LINE L2 -61 3252 3193 21 71 0 0 chr4 173245311 173245353 -11043309 + AT_rich Low_complexity Low_complexity 1 42 0 1602 177 13 29 chr4 173245854 173246170 -11042492 + AluJb SINE Alu 2 312 0 1013 286 90 10 chr4 173247126 173247514 -11041148 + L2 LINE L2 2895 3313 0 388 86 0 0 chr4 173247608 173247666 -11040996 + MADE1 DNA Mariner 23 80 0 22 35 0 0 chr4 173248156 173248185 -11040477 + AT_rich Low_complexity Low_complexity 1 29 0 656 237 31 16 chr4 173248374 173248568 -11040094 + L1MD2 LINE L1 6130 6326 -33 372 218 82 27 chr4 173249111 173249221 -11039441 + MER92C LTR ERV1 1 116 -438 253 180 49 0 chr4 173249339 173249400 -11039262 + MER92C LTR ERV1 491 554 0 206 217 150 0 chr4 173249829 173249885 -11038777 - MIR SINE MIR -81 181 117 846 246 50 5 chr4 173249885 173250105 -11038557 + MIR SINE MIR 1 230 -32 246 304 0 14 chr4 173250156 173250225 -11038437 - MIR SINE MIR -163 99 32 456 252 68 0 chr4 173250388 173250608 -11038054 + L1ME3A LINE L1 5263 5508 -656 250 280 19 9 chr4 173250618 173250725 -11037937 + L1ME3A LINE L1 5554 5661 -509 240 211 113 14 chr4 173250880 173250951 -11037711 + Charlie2 DNA MER1_type 231 308 -2474 904 184 73 94 chr4 173251025 173251492 -11037170 + Charlie2 DNA MER1_type 2287 2743 -119 375 235 78 0 chr4 173251694 173251847 -11036815 + L1ME3A LINE L1 5790 5954 -216 290 246 40 16 chr4 173252034 173252160 -11036502 - L1ME LINE L1 -395 5767 5639 27 29 0 0 chr4 173253365 173253399 -11035263 + AT_rich Low_complexity Low_complexity 1 34 0 26 0 0 0 chr4 173254171 173254197 -11034465 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr4 173257894 173257915 -11030747 + AT_rich Low_complexity Low_complexity 1 21 0 1328 86 58 13 chr4 173258074 173258359 -11030303 - LTR7 LTR ERV1 -63 387 1 242 359 19 25 chr4 173258737 173258896 -11029766 - LTR67 LTR ERVL -364 193 36 2432 94 0 0 chr4 173258957 173259264 -11029398 - AluSc SINE Alu -2 307 1 1593 213 79 113 chr4 173261371 173261693 -11026969 + LTR68 LTR ERV1 1 332 -408 1554 201 16 10 chr4 173261693 173262002 -11026660 + AluJo SINE Alu 1 311 -1 1593 213 79 113 chr4 173262002 173262440 -11026222 + LTR68 LTR ERV1 332 735 -5 552 95 53 21 chr4 173262490 173262585 -11026077 + MER4A LTR ERV1 1 98 -566 1611 132 14 30 chr4 173262585 173262934 -11025728 + MER4A LTR ERV1 263 664 0 2037 111 50 10 chr4 173262970 173263268 -11025394 - AluSx SINE Alu -2 310 1 21 0 0 0 chr4 173263936 173263957 -11024705 + AT_rich Low_complexity Low_complexity 1 21 0 1161 184 60 85 chr4 173264114 173264237 -11024425 + MLT1B LTR MaLR 3 128 -262 2210 94 0 48 chr4 173264237 173264546 -11024116 - AluSg SINE Alu -15 295 2 1161 184 60 85 chr4 173264546 173264787 -11023875 + MLT1B LTR MaLR 128 358 -32 280 200 31 15 chr4 173264788 173264853 -11023809 - MIR SINE MIR -117 145 80 258 290 114 44 chr4 173265384 173265637 -11023025 + L2 LINE L2 2786 3056 -216 806 224 0 0 chr4 173265789 173265941 -11022721 - FRAM SINE Alu -24 152 1 901 238 189 26 chr4 173265971 173266399 -11022263 - MLT1J LTR MaLR -13 498 1 344 299 152 10 chr4 173266543 173266747 -11021915 + MLT1L LTR MaLR 376 608 -7 252 374 20 82 chr4 173266797 173266992 -11021670 + L2 LINE L2 3072 3254 -18 181 322 0 17 chr4 173266944 173267003 -11021659 + MIR SINE MIR 204 261 -1 * 23 33 0 0 chr4 173267550 173267580 -11021082 + AT_rich Low_complexity Low_complexity 1 30 0 1730 180 26 17 chr4 173267681 173268026 -11020636 + MER7A DNA MER2_type 1 346 0 2396 183 94 32 chr4 173270920 173271449 -11017213 - MER68 LTR ERV1 0 562 1 801 142 43 129 chr4 173272641 173272873 -11015789 + MER68 LTR ERV1 22 233 -329 291 242 40 61 chr4 173273366 173273465 -11015197 - L2 LINE L2 -8 3305 3209 2312 84 0 3 chr4 173273631 173273930 -11014732 + AluSq SINE Alu 1 298 -15 275 318 68 15 chr4 173274476 173274800 -11013862 + L1M4 LINE L1 2483 2823 -3323 23 54 0 0 chr4 173275099 173275136 -11013526 + AT_rich Low_complexity Low_complexity 1 37 0 247 258 86 93 chr4 173275355 173275879 -11012783 + L1M4 LINE L1 3729 4248 -1898 329 296 93 0 chr4 173276722 173276830 -11011832 + L2 LINE L2 3175 3292 -21 23 0 0 0 chr4 173277003 173277026 -11011636 + AT_rich Low_complexity Low_complexity 1 23 0 208 118 47 71 chr4 173278217 173278302 -11010360 + (CCGGG)n Simple_repeat Simple_repeat 4 86 0 22 0 0 0 chr4 173279044 173279066 -11009596 + AT_rich Low_complexity Low_complexity 1 22 0 306 315 109 18 chr4 173279183 173279348 -11009314 + MIR SINE MIR 78 257 -5 1727 113 63 51 chr4 173279348 173279683 -11008979 - MER44D DNA MER2_type 0 609 1 21 0 0 0 chr4 173282205 173282226 -11006436 + AT_rich Low_complexity Low_complexity 1 21 0 191 36 36 0 chr4 173282320 173282348 -11006314 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 1028 278 57 27 chr4 173282392 173282799 -11005863 + Charlie7 DNA MER1_type 144 562 -2050 2245 112 6 13 chr4 173282920 173283234 -11005428 - AluSq SINE Alu -1 312 1 1132 143 0 0 chr4 173283622 173283783 -11004879 - AluSq SINE Alu -11 302 142 2276 109 0 3 chr4 173283898 173284200 -11004462 + AluSx SINE Alu 1 301 -11 367 304 42 63 chr4 173287114 173287305 -11001357 - MIR SINE MIR -60 202 16 304 274 14 0 chr4 173287894 173287967 -11000695 + MIR3 SINE MIR 101 174 -34 2304 102 3 9 chr4 173289454 173289769 -10998893 - AluSq SINE Alu 0 313 1 580 138 81 24 chr4 173290003 173290126 -10998536 + L2 LINE L2 3183 3312 -1 297 324 82 35 chr4 173291496 173291563 -10997099 - MLT1J2 LTR MaLR -4 446 384 2094 109 7 20 chr4 173291563 173291857 -10996805 + AluSg SINE Alu 5 294 -16 297 324 82 35 chr4 173291857 173291959 -10996703 - MLT1J2 LTR MaLR -66 384 269 324 70 0 0 chr4 173292520 173292563 -10996099 + (CA)n Simple_repeat Simple_repeat 2 44 0 235 105 0 0 chr4 173293224 173293262 -10995400 - MLT1I LTR MaLR -51 358 321 447 168 0 32 chr4 173293528 173293623 -10995039 + LTR7 LTR ERV1 357 448 -2 13313 115 17 23 chr4 173293625 173296441 -10992221 + HERVH LTR ERV1 1 2987 -4726 861 134 13 0 chr4 173296435 173296584 -10992078 + HERVH LTR ERV1 3140 3290 -4423 * 3197 113 2 4 chr4 173296583 173297080 -10991582 + HERVH LTR ERV1 3500 3995 -3718 1091 118 0 48 chr4 173297082 173297269 -10991393 + HERVH LTR ERV1 4490 4667 -3046 * 3765 76 55 2 chr4 173297265 173297846 -10990816 + HERVH LTR ERV1 5769 6380 -1333 * 7865 83 25 4 chr4 173297819 173298980 -10989682 + HERVH LTR ERV1 6529 7713 0 2363 89 129 20 chr4 173298980 173299384 -10989278 + LTR7 LTR ERV1 1 448 -2 26 0 0 0 chr4 173299440 173299466 -10989196 + AT_rich Low_complexity Low_complexity 1 26 0 635 279 202 3 chr4 173300027 173300314 -10988348 + L2 LINE L2 2450 2793 -521 268 264 11 11 chr4 173300378 173300465 -10988197 - LTR16A LTR ERVL -348 102 16 794 306 93 37 chr4 173300515 173300943 -10987719 + L2 LINE L2 2857 3308 -5 233 287 234 0 chr4 173301877 173301971 -10986691 + L2 LINE L2 3194 3309 -4 1716 188 11 7 chr4 173302542 173302943 -10985719 - LTR32 LTR ERVL -2 469 15 2273 100 7 7 chr4 173303150 173303450 -10985212 - AluSq SINE Alu -13 300 1 567 208 124 98 chr4 173303732 173303997 -10984665 - ORSL DNA AcHobo -2 273 2 1451 190 54 10 chr4 173305088 173305383 -10983279 + AluJo SINE Alu 5 312 0 275 172 65 11 chr4 173305387 173305480 -10983182 + GA-rich Low_complexity Low_complexity 3 100 0 229 214 122 38 chr4 173306431 173306562 -10982100 - L1ME3A LINE L1 -208 5962 5821 2153 236 85 41 chr4 173306569 173307274 -10981388 + HERVL40 LTR ERVL 3013 3748 -1782 618 211 129 26 chr4 173307274 173307606 -10981056 - MLT1A1 LTR MaLR 0 428 1 2394 241 64 35 chr4 173307616 173308174 -10980488 + HERVL40 LTR ERVL 2036 1975 -1062 1917 120 138 38 chr4 173308174 173308565 -10980097 + MSTB1 LTR MaLR 3 432 0 2394 241 64 35 chr4 173308565 173308871 -10979791 + HERVL40 LTR ERVL 1974 2269 -768 314 268 71 27 chr4 173309181 173309293 -10979369 + HERVL40 LTR ERVL 2491 2607 -430 1081 240 16 4 chr4 173309731 173309981 -10978681 + HERVL40 LTR ERVL 5277 5529 -1 1632 225 41 73 chr4 173309984 173310518 -10978144 + LTR40a LTR ERVL 3 519 0 2912 78 0 15 chr4 173310544 173310944 -10977718 - L1PA8A LINE L1 -2 6129 5736 1079 107 20 7 chr4 173310945 173311095 -10977567 + AluSq SINE Alu 56 207 -106 929 102 6 54 chr4 173311098 173311264 -10977398 - L1P3 LINE L1 -5716 159 2 1725 134 7 14 chr4 173311281 173311591 -10977071 - AluSg SINE Alu 0 308 1 22 56 0 0 chr4 173311594 173311630 -10977032 + AT_rich Low_complexity Low_complexity 1 36 0 1852 121 3 32 chr4 173311749 173312031 -10976631 - AluSc SINE Alu -35 274 1 337 294 88 59 chr4 173312048 173312761 -10975901 - L1MEd LINE L1 -4867 1252 523 5192 69 10 42 chr4 173312994 173314154 -10974508 + L1PA8A LINE L1 4873 5976 -155 1249 137 18 50 chr4 173314422 173314699 -10973963 + L1PA8 LINE L1 5895 6162 -10 27 29 0 0 chr4 173314699 173314733 -10973929 + AT_rich Low_complexity Low_complexity 1 34 0 800 249 108 46 chr4 173314972 173315453 -10973209 - L1ME2 LINE L1 -8 6156 5646 815 276 13 29 chr4 173315601 173315840 -10972822 - MIR SINE MIR -5 257 23 225 0 0 0 chr4 173316412 173316437 -10972225 + (A)n Simple_repeat Simple_repeat 1 25 0 238 265 34 86 chr4 173316698 173316815 -10971847 + L2 LINE L2 3201 3311 -2 326 269 128 7 chr4 173316998 173317151 -10971511 - MIR SINE MIR -62 146 6 582 261 103 26 chr4 173317852 173318047 -10970615 - MIR SINE MIR -5 257 48 2400 82 3 3 chr4 173318881 173319186 -10969476 + AluSx SINE Alu 1 305 -7 414 315 13 0 chr4 173319538 173319682 -10968980 + MIR SINE MIR 22 168 -71 618 292 30 68 chr4 173319737 173320104 -10968558 - MLT1K LTR MaLR -24 564 212 1131 139 0 12 chr4 173320982 173321154 -10967508 + AluJb SINE Alu 137 306 -6 561 100 0 0 chr4 173321754 173321834 -10966828 - MADE1 DNA Mariner 0 80 1 228 226 0 15 chr4 173322300 173322369 -10966293 + MIR SINE MIR 98 164 -65 21 36 0 0 chr4 173322375 173322403 -10966259 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 173323549 173323571 -10965091 + AT_rich Low_complexity Low_complexity 1 22 0 412 350 63 36 chr4 173324167 173324390 -10964272 + L2 LINE L2 3043 3271 -1 1315 191 43 29 chr4 173326476 173326754 -10961908 - AluJo SINE Alu -30 282 1 253 262 155 39 chr4 173328573 173328676 -10959986 - L2 LINE L2 -19 3294 3180 181 306 40 73 chr4 173328870 173328994 -10959668 - L2 LINE L2 -460 2854 2735 1897 148 129 16 chr4 173330770 173331156 -10957506 - MSTB1 LTR MaLR -2 430 1 258 339 54 18 chr4 173331339 173331451 -10957211 - L2 LINE L2 -16 3256 3141 253 193 67 22 chr4 173332101 173332236 -10956426 + (TA)n Simple_repeat Simple_repeat 2 142 0 23 0 0 0 chr4 173333054 173333077 -10955585 + AT_rich Low_complexity Low_complexity 1 23 0 2162 119 3 0 chr4 173333128 173333431 -10955231 + AluSc SINE Alu 6 309 0 433 295 87 27 chr4 173335742 173335925 -10952737 + MIR SINE MIR 59 252 -10 225 293 71 10 chr4 173336189 173336288 -10952374 - MIR SINE MIR -138 124 20 1579 152 8 0 chr4 173337160 173337410 -10951252 - AluJb SINE Alu -59 253 2 5321 177 25 25 chr4 173338201 173338914 -10949748 - L1PA16 LINE L1 -9 6157 5446 183 42 0 0 chr4 173338914 173338938 -10949724 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2281 86 0 0 chr4 173338939 173339218 -10949444 - AluSg SINE Alu -31 279 1 5321 177 25 25 chr4 173339218 173340633 -10948029 - L1PA16 LINE L1 -719 5447 4031 204 263 78 106 chr4 173341124 173341303 -10947359 - MIR SINE MIR -76 186 13 218 333 53 0 chr4 173341541 173341616 -10947046 + L2 LINE L2 3234 3312 -1 2070 125 16 13 chr4 173341972 173342277 -10946385 - AluJo SINE Alu 0 312 7 2804 13 0 6 chr4 173342475 173342787 -10945875 - AluYa5 SINE Alu -1 310 1 309 273 11 11 chr4 173343187 173343275 -10945387 - MIR SINE MIR -21 241 154 361 337 69 26 chr4 173343352 173343504 -10945158 + MIR3 SINE MIR 2 160 -48 2625 52 0 0 chr4 173343974 173344284 -10944378 - AluY SINE Alu -1 310 1 2140 136 0 0 chr4 173344801 173345109 -10943553 + AluSx SINE Alu 1 308 -4 300 277 128 7 chr4 173345288 173345429 -10943233 - L1ME3A LINE L1 -220 5950 5793 1154 280 100 47 chr4 173345430 173345646 -10943016 - L1ME3A LINE L1 -437 5733 5530 1702 184 26 3 chr4 173345646 173345950 -10942712 + AluJb SINE Alu 1 311 -1 1154 280 100 47 chr4 173345950 173347389 -10941273 - L1ME3A LINE L1 -640 5530 3983 6917 51 2 1 chr4 173348013 173348908 -10939754 - L1PA6 LINE L1 -5 6149 5254 625 172 35 0 chr4 173349081 173349197 -10939465 - AluJo SINE Alu -3 309 190 1034 189 0 41 chr4 173349243 173349439 -10939223 - AluJo SINE Alu -124 188 1 298 277 70 43 chr4 173350008 173350264 -10938398 + L1M4 LINE L1 2111 2373 -3773 2014 150 3 3 chr4 173350269 173350575 -10938087 + AluSx SINE Alu 7 312 0 27 0 0 0 chr4 173350811 173350838 -10937824 + AT_rich Low_complexity Low_complexity 1 27 0 195 184 0 0 chr4 173350900 173350938 -10937724 + A-rich Low_complexity Low_complexity 1 38 0 225 0 0 0 chr4 173351020 173351045 -10937617 + (A)n Simple_repeat Simple_repeat 1 25 0 37 52 0 0 chr4 173351384 173351442 -10937220 + AT_rich Low_complexity Low_complexity 1 58 0 1770 101 0 4 chr4 173354600 173354828 -10933834 + AluSc SINE Alu 1 227 -82 422 269 72 27 chr4 173354883 173355106 -10933556 + MLT1H LTR MaLR 5 237 -312 1974 145 0 3 chr4 173355824 173356120 -10932542 - AluSx SINE Alu -17 295 1 496 242 23 9 chr4 173358400 173358649 -10930013 - MER20 DNA MER1_type 0 219 3 243 79 0 0 chr4 173359188 173359226 -10929436 + (A)n Simple_repeat Simple_repeat 1 38 0 512 235 53 8 chr4 173359342 173359474 -10929188 + MER45A DNA AcHobo 40 177 -1 863 210 145 69 chr4 173359774 173360279 -10928383 + MLT1H LTR MaLR 5 547 -2 292 301 63 42 chr4 173360831 173361070 -10927592 + MLT1I LTR MaLR 131 374 -35 2298 113 3 0 chr4 173361122 173361433 -10927229 - AluSq SINE Alu -1 312 1 1673 188 0 14 chr4 173361789 173362071 -10926591 - AluJb SINE Alu -34 278 1 1289 281 23 13 chr4 173362521 173362909 -10925753 + LTR40a LTR ERVL 21 412 -107 714 304 29 46 chr4 173362919 173363004 -10925658 + MERVL LTR ERVL 2393 2478 -2518 2238 125 3 3 chr4 173363004 173363316 -10925346 - AluSx SINE Alu 0 312 1 714 304 29 46 chr4 173363316 173363674 -10924988 + MERVL LTR ERVL 2478 2832 -2164 258 222 32 0 chr4 173363690 173363753 -10924909 - LTR33A LTR ERVL 0 523 459 2286 132 41 26 chr4 173363756 173364174 -10924488 - Tigger2a DNA MER2_type 0 434 11 762 264 198 22 chr4 173364206 173364786 -10923876 - LTR50 LTR ERVL -113 682 1 1300 178 89 58 chr4 173364845 173365137 -10923525 + AluJb SINE Alu 1 301 -11 476 258 162 6 chr4 173365371 173365538 -10923124 - MIR SINE MIR -3 259 67 1634 114 17 97 chr4 173365538 173365890 -10922772 - MER4A LTR ERV1 0 664 341 531 99 0 117 chr4 173365906 173366017 -10922645 - MER4A LTR ERV1 -566 98 1 842 171 142 0 chr4 173366247 173366294 -10922368 + MER3 DNA MER1_type 1 72 -137 358 243 182 14 chr4 173366294 173366442 -10922220 - MER3 DNA MER1_type 0 209 37 1230 163 8 46 chr4 173366690 173366929 -10921733 - AluJo SINE Alu -82 230 1 192 111 0 0 chr4 173366933 173366969 -10921693 + (A)n Simple_repeat Simple_repeat 1 36 0 337 231 22 22 chr4 173367045 173367136 -10921526 + L2 LINE L2 3222 3312 -1 2182 90 10 13 chr4 173368253 173368564 -10920098 + AluSx SINE Alu 1 310 -2 592 164 95 0 chr4 173368748 173368864 -10919798 - MER44D DNA MER2_type -1 604 606 1092 212 33 4 chr4 173368990 173369231 -10919431 - MER44D DNA MER2_type -454 251 4 235 273 0 0 chr4 173369270 173369325 -10919337 - MER5A DNA MER1_type -7 182 128 186 186 85 17 chr4 173369545 173369604 -10919058 - L3 LINE CR1 -1110 467 405 311 338 50 60 chr4 173371501 173371702 -10916960 - L1ME3A LINE L1 -3 6167 5969 2409 88 0 0 chr4 173371739 173372035 -10916627 + AluSg SINE Alu 1 296 -14 28 48 0 0 chr4 173372086 173372128 -10916534 + AT_rich Low_complexity Low_complexity 1 42 0 2141 231 76 20 chr4 173372151 173372744 -10915918 + MLT1E2 LTR MaLR 1 626 0 1735 184 71 32 chr4 173372884 173373323 -10915339 + LTR2B LTR ERV1 35 490 0 290 297 119 5 chr4 173373343 173373562 -10915100 - L1M4 LINE L1 -1206 4940 4697 221 281 0 0 chr4 173373662 173373719 -10914943 + T-rich Low_complexity Low_complexity 1 57 0 213 272 27 120 chr4 173373820 173374004 -10914658 + L2 LINE L2 2577 2743 -571 660 273 68 12 chr4 173374418 173374667 -10913995 + L1ME3A LINE L1 5904 6166 -4 26 30 0 0 chr4 173374796 173374829 -10913833 + AT_rich Low_complexity Low_complexity 1 33 0 332 310 0 0 chr4 173375435 173375506 -10913156 + MER58 DNA MER1_type 8 78 -308 901 189 6 0 chr4 173375506 173375681 -10912981 - AluSg/x SINE Alu -8 302 127 193 96 0 96 chr4 173375851 173375903 -10912759 + MIR3 SINE MIR 162 208 0 198 397 59 7 chr4 173376891 173377027 -10911635 - L2 LINE L2 -62 3210 3068 264 282 77 39 chr4 173377051 173377232 -10911430 - L2 LINE L2 -175 3097 2910 539 130 20 41 chr4 173377269 173377415 -10911247 + CT-rich Low_complexity Low_complexity 3 145 0 869 143 99 6 chr4 173377439 173377600 -10911062 - FRAM SINE Alu 0 176 1 1716 137 114 7 chr4 173378146 173378417 -10910245 + AluSg SINE Alu 1 300 -10 4317 60 23 5 chr4 173378426 173379435 -10909227 + MER11A LTR ERVK 2 1266 0 243 115 51 26 chr4 173379981 173380059 -10908603 + (TA)n Simple_repeat Simple_repeat 1 80 0 2293 108 0 0 chr4 173382911 173383206 -10905456 - AluSc SINE Alu -14 295 1 198 131 0 66 chr4 173383708 173383769 -10904893 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 713 120 0 39 chr4 173384681 173385697 -10902965 + (TA)n Simple_repeat Simple_repeat 1 976 0 662 296 112 84 chr4 173386199 173387063 -10901599 + L2 LINE L2 2148 3031 -241 340 125 18 0 chr4 173387697 173387753 -10900909 + L2 LINE L2 3257 3313 0 201 152 0 0 chr4 173387753 173387786 -10900876 + (AATAG)n Simple_repeat Simple_repeat 5 37 0 2025 182 24 39 chr4 173387799 173388266 -10900396 + MLT1C LTR MaLR 3 462 -5 1258 110 17 107 chr4 173388964 173389061 -10899601 + HSMAR2 DNA Mariner 1026 1130 -172 1716 185 16 13 chr4 173389061 173389187 -10899475 + AluJo SINE Alu 1 125 -187 180 0 0 0 chr4 173389187 173389207 -10899455 + (TA)n Simple_repeat Simple_repeat 2 21 0 1716 185 16 13 chr4 173389207 173389388 -10899274 + AluJo SINE Alu 125 309 -3 1258 110 17 107 chr4 173389388 173389590 -10899072 + HSMAR2 DNA Mariner 1130 1298 -4 31 44 0 0 chr4 173389593 173389638 -10899024 + AT_rich Low_complexity Low_complexity 1 45 0 253 313 0 0 chr4 173389660 173389727 -10898935 + GA-rich Low_complexity Low_complexity 1 67 0 2268 112 0 0 chr4 173390419 173390722 -10897940 - AluSq SINE Alu -7 306 4 21 36 0 0 chr4 173390858 173390886 -10897776 + AT_rich Low_complexity Low_complexity 1 28 0 405 237 199 19 chr4 173391356 173391512 -10897150 - L1ME3A LINE L1 -8 6162 5979 717 176 112 6 chr4 173391739 173391909 -10896753 - MER5A DNA MER1_type 0 189 2 1919 121 4 0 chr4 173391977 173392250 -10896412 - AluSx SINE Alu -17 295 22 1978 101 36 42 chr4 173392301 173392607 -10896055 - AluSc SINE Alu -3 306 3 1535 148 66 4 chr4 173392609 173392866 -10895796 - AluJb SINE Alu -10 302 30 935 163 47 5 chr4 173393172 173393362 -10895300 + L1MA3 LINE L1 6108 6305 0 21 0 0 0 chr4 173393455 173393476 -10895186 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr4 173394242 173394277 -10894385 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 173395158 173395179 -10893483 + AT_rich Low_complexity Low_complexity 1 21 0 28 48 0 0 chr4 173395295 173395337 -10893325 + AT_rich Low_complexity Low_complexity 1 42 0 1822 162 0 28 chr4 173395351 173395672 -10892990 + AluJb SINE Alu 1 312 0 599 127 85 0 chr4 173396927 173397045 -10891617 - L1MA7 LINE L1 -1 6290 6163 432 116 0 35 chr4 173397154 173397240 -10891422 - L1PA4 LINE L1 -2 6153 6071 2234 84 7 0 chr4 173397759 173398046 -10890616 + AluSc SINE Alu 1 289 -20 871 112 0 0 chr4 173398553 173398669 -10889993 + AluSg/x SINE Alu 162 277 -33 22 0 0 0 chr4 173399155 173399177 -10889485 + AT_rich Low_complexity Low_complexity 1 22 0 216 213 0 0 chr4 173400000 173400061 -10888601 + (TA)n Simple_repeat Simple_repeat 1 61 0 479 322 92 86 chr4 173400449 173401227 -10887435 - L2 LINE L2 0 3313 2542 1613 159 6 60 chr4 173401227 173401541 -10887121 - AluJb SINE Alu -15 297 1 479 322 92 86 chr4 173401541 173401707 -10886955 - L2 LINE L2 -771 2542 2378 2304 66 3 3 chr4 173401745 173402034 -10886628 + AluSp SINE Alu 1 289 -24 1867 118 0 11 chr4 173403192 173403462 -10885200 + AluSx SINE Alu 1 267 -45 490 351 32 11 chr4 173406870 173407055 -10881607 - MIR3 SINE MIR -4 204 16 31 76 0 0 chr4 173407224 173407290 -10881372 + AT_rich Low_complexity Low_complexity 1 66 0 859 224 100 17 chr4 173407511 173407810 -10880852 - L1MC5 LINE L1 -30 7931 7608 26 30 0 0 chr4 173407909 173407942 -10880720 + AT_rich Low_complexity Low_complexity 1 33 0 1394 115 10 5 chr4 173408078 173408287 -10880375 - AluSx SINE Alu -76 236 27 781 208 52 26 chr4 173408289 173408481 -10880181 + MER58B DNA MER1_type 94 290 -51 607 136 286 0 chr4 173408483 173408630 -10880032 + MER53 DNA DNA 1 189 0 332 186 0 0 chr4 173408632 173408691 -10879971 + MER58B DNA MER1_type 283 341 0 469 200 0 11 chr4 173408810 173408905 -10879757 + MER103 DNA DNA 66 159 -7 1081 89 0 19 chr4 173412380 173412538 -10876124 - AluY SINE Alu -2 309 155 327 207 92 11 chr4 173413204 173413291 -10875371 - L1MC4 LINE L1 -1336 6706 6613 25 0 0 0 chr4 173413919 173413944 -10874718 + AT_rich Low_complexity Low_complexity 1 25 0 41 0 0 19 chr4 173414129 173414158 -10874504 + AT_rich Low_complexity Low_complexity 1 30 -21 1902 116 0 8 chr4 173414158 173414425 -10874237 - AluSc SINE Alu -24 285 21 41 0 0 19 chr4 173414425 173414447 -10874215 + AT_rich Low_complexity Low_complexity 30 51 0 2241 99 0 3 chr4 173414901 173415205 -10873457 - AluSq SINE Alu -10 303 1 278 262 49 0 chr4 173415642 173415703 -10872959 - L2 LINE L2 0 3313 3250 27 0 0 0 chr4 173415869 173415896 -10872766 + AT_rich Low_complexity Low_complexity 1 27 0 736 43 0 0 chr4 173417600 173417694 -10870968 - AluSp/q SINE Alu -5 308 215 209 301 123 0 chr4 173418716 173418789 -10869873 + L2 LINE L2 3232 3313 0 2308 60 0 7 chr4 173419747 173420067 -10868595 + AluY SINE Alu 1 318 0 252 314 101 26 chr4 173420455 173420735 -10867927 + MLT1L LTR MaLR 230 604 -3 22 0 0 0 chr4 173420994 173421016 -10867646 + AT_rich Low_complexity Low_complexity 1 22 0 2354 71 3 0 chr4 173421787 173422084 -10866578 + AluY SINE Alu 1 298 -13 2480 138 35 35 chr4 173422589 173423015 -10865647 + MSTB LTR MaLR 1 426 0 203 289 0 66 chr4 173424170 173424246 -10864416 - L2 LINE L2 -2 3270 3200 2044 136 83 0 chr4 173424429 173424767 -10863895 + MER47A DNA MER2_type 1 366 0 2203 122 3 0 chr4 173424988 173425300 -10863362 + AluSq SINE Alu 1 313 0 184 333 0 0 chr4 173425506 173425554 -10863108 + MIR SINE MIR 91 138 -70 305 257 131 29 chr4 173426081 173426287 -10862375 - L1ME4a LINE L1 -161 5960 5734 521 254 164 39 chr4 173426439 173426671 -10861991 + MIR SINE MIR 2 262 0 2148 127 0 13 chr4 173427420 173427734 -10860928 - AluSx SINE Alu -2 310 1 2556 29 7 3 chr4 173427931 173428241 -10860421 - AluY SINE Alu 0 311 1 2091 137 3 0 chr4 173429873 173430194 -10858468 + Tigger2 DNA MER2_type 2397 2718 0 1943 94 0 124 chr4 173430222 173430561 -10858101 - AluSq SINE Alu -16 297 1 1913 131 71 3 chr4 173430967 173431303 -10857359 - MER46B DNA MER2_type 0 236 3 290 337 36 4 chr4 173431307 173431493 -10857169 + MIR SINE MIR 7 262 0 298 269 15 60 chr4 173432952 173433086 -10855576 - MIR SINE MIR -49 213 86 2267 113 0 0 chr4 173434984 173435294 -10853368 + AluSx SINE Alu 1 310 -2 420 265 47 51 chr4 173436192 173436297 -10852365 + L1 LINE L1 2679 2783 -3363 744 274 26 35 chr4 173436297 173436523 -10852139 - MER58A DNA MER1_type 0 224 1 420 265 47 51 chr4 173436523 173436651 -10852011 + L1 LINE L1 2783 2911 -3235 322 297 113 30 chr4 173436690 173437097 -10851565 + L1 LINE L1 3120 3560 -2586 333 336 47 37 chr4 173437365 173437579 -10851083 + MLT2F LTR ERVL 216 431 -232 702 192 65 37 chr4 173438253 173438467 -10850195 + L1MC5 LINE L1 7631 7850 -111 197 359 51 0 chr4 173439853 173439931 -10848731 - L2 LINE L2 -84 3188 3107 31 26 0 0 chr4 173440136 173440174 -10848488 + AT_rich Low_complexity Low_complexity 1 38 0 301 287 96 11 chr4 173440463 173440557 -10848105 - MIR3 SINE MIR -49 159 58 2080 87 55 3 chr4 173441216 173441505 -10847157 - AluSx SINE Alu -8 304 1 315 304 109 14 chr4 173443028 173443166 -10845496 - L2 LINE L2 0 3313 3163 23 0 0 0 chr4 173443258 173443281 -10845381 + AT_rich Low_complexity Low_complexity 1 23 0 791 224 12 18 chr4 173443430 173443600 -10845062 + FRAM SINE Alu 1 168 -8 21 0 0 0 chr4 173443631 173443652 -10845010 + AT_rich Low_complexity Low_complexity 1 21 0 374 295 110 46 chr4 173443765 173444046 -10844616 + L1ME4a LINE L1 5636 5934 -187 221 365 26 2 chr4 173444408 173444501 -10844161 + MIR SINE MIR 32 125 -83 398 301 157 14 chr4 173444509 173444725 -10843937 - MIR SINE MIR 0 262 16 1289 273 245 24 chr4 173444797 173445794 -10842868 - L2 LINE L2 0 3313 2077 198 333 101 25 chr4 173445965 173446124 -10842538 - L2 LINE L2 -930 2384 2214 461 242 188 7 chr4 173446336 173446485 -10842177 - MIR SINE MIR -40 222 47 416 191 221 66 chr4 173446851 173446987 -10841675 - MER69A DNA AcHobo -18 159 3 2000 130 10 3 chr4 173447024 173447316 -10841346 + AluSq SINE Alu 1 294 -19 23 0 0 0 chr4 173447317 173447340 -10841322 + AT_rich Low_complexity Low_complexity 1 23 0 1378 162 10 80 chr4 173447571 173447913 -10840749 - AluJo SINE Alu 0 312 1 212 257 198 26 chr4 173449292 173449458 -10839204 - MIR SINE MIR -50 212 21 24 0 0 0 chr4 173450377 173450401 -10838261 + AT_rich Low_complexity Low_complexity 1 24 0 770 296 14 5 chr4 173451705 173451927 -10836735 + MIR SINE MIR 32 252 -10 321 338 68 19 chr4 173452144 173452351 -10836311 - MIR SINE MIR 0 262 46 2589 155 33 81 chr4 173452821 173453402 -10835260 - MLT2B3 LTR ERVL 0 554 2 526 159 0 11 chr4 173453403 173453491 -10835171 - Ricksha DNA DNA -2899 347 261 317 94 125 0 chr4 173453472 173453536 -10835126 - ERVL LTR ERVL -877 4887 4816 * 2043 124 3 7 chr4 173453559 173453858 -10834804 + AluSx SINE Alu 1 298 -14 189 147 0 0 chr4 173454069 173454103 -10834559 + (T)n Simple_repeat Simple_repeat 1 34 0 955 109 0 0 chr4 173454781 173454909 -10833753 + AluSq/x SINE Alu 6 133 -180 2266 102 0 13 chr4 173454913 173455226 -10833436 + AluSx SINE Alu 1 309 -3 221 218 339 0 chr4 173455335 173455459 -10833203 + MIR3 SINE MIR 21 186 -22 280 278 30 38 chr4 173456076 173456252 -10832410 - MIR SINE MIR -31 231 9 2332 72 0 7 chr4 173456370 173456674 -10831988 + AluY SINE Alu 1 302 -9 1569 98 22 0 chr4 173459297 173459522 -10829140 - MER30 DNA MER1_type 0 230 1 1698 110 35 0 chr4 173459600 173459828 -10828834 + AluSx SINE Alu 21 256 -56 636 78 0 26 chr4 173459828 173459944 -10828718 + (TA)n Simple_repeat Simple_repeat 1 113 0 225 0 0 0 chr4 173460092 173460117 -10828545 + (T)n Simple_repeat Simple_repeat 1 25 0 183 222 0 0 chr4 173460192 173460237 -10828425 + T-rich Low_complexity Low_complexity 1 45 0 33 25 0 0 chr4 173460297 173460337 -10828325 + AT_rich Low_complexity Low_complexity 1 40 0 400 256 25 16 chr4 173461166 173461287 -10827375 - L2 LINE L2 0 3313 3192 181 257 19 124 chr4 173461323 173461428 -10827234 - MIR3 SINE MIR -3 205 112 21 36 0 0 chr4 173462318 173462346 -10826316 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 173462560 173462582 -10826080 + AT_rich Low_complexity Low_complexity 1 22 0 2413 60 0 3 chr4 173462732 173463033 -10825629 - AluY SINE Alu -11 300 1 260 175 32 16 chr4 173463467 173463530 -10825132 + L1ME4a LINE L1 6058 6121 0 25 0 0 0 chr4 173464592 173464617 -10824045 + AT_rich Low_complexity Low_complexity 1 25 0 2890 168 18 36 chr4 173465251 173465864 -10822798 + L1MB7 LINE L1 5566 6167 -17 2170 110 3 13 chr4 173465900 173466201 -10822461 + AluSx SINE Alu 1 298 -14 1138 216 69 48 chr4 173466283 173466436 -10822226 + MER2 DNA MER2_type 1 149 -196 1997 131 24 39 chr4 173466436 173466817 -10821845 - THE1C LTR MaLR 0 375 1 1138 216 69 48 chr4 173466817 173466997 -10821665 + MER2 DNA MER2_type 149 341 -4 21 0 0 0 chr4 173467026 173467047 -10821615 + AT_rich Low_complexity Low_complexity 1 21 0 1369 201 50 105 chr4 173467313 173467712 -10820950 + MSTD LTR MaLR 1 377 -19 311 95 0 0 chr4 173467717 173467759 -10820903 + MSTD LTR MaLR 355 396 0 697 247 49 75 chr4 173468756 173469023 -10819639 + MIR SINE MIR 3 262 0 3935 198 57 9 chr4 173469451 173470225 -10818437 + MER21B LTR ERV1 1 811 -52 1493 214 101 28 chr4 173471082 173471517 -10817145 + MLT1C LTR MaLR 1 467 0 463 271 154 8 chr4 173472416 173472663 -10815999 + HAL1b LINE L1 821 1103 -245 288 0 0 0 chr4 173473175 173473207 -10815455 + (TA)n Simple_repeat Simple_repeat 1 32 0 243 118 0 0 chr4 173473300 173473334 -10815328 + MER21B LTR ERV1 140 173 -690 292 237 0 0 chr4 173474165 173474224 -10814438 + MIR SINE MIR 96 154 -108 180 0 0 0 chr4 173474495 173474515 -10814147 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1577 47 0 26 chr4 173474529 173474722 -10813940 - AluY SINE Alu -24 287 100 225 308 15 15 chr4 173474722 173474787 -10813875 + MER5A DNA MER1_type 125 189 0 185 390 51 8 chr4 173474795 173474913 -10813749 - L2 LINE L2 -231 3041 2919 323 242 0 0 chr4 173474979 173475045 -10813617 + L2 LINE L2 3248 3313 0 242 231 139 37 chr4 173475256 173475364 -10813298 - MIR SINE MIR 0 262 144 29 78 0 0 chr4 173477220 173477284 -10811378 + AT_rich Low_complexity Low_complexity 1 64 0 245 284 78 0 chr4 173477326 173477428 -10811234 - MER112 DNA MER1_type -148 112 3 24 0 0 0 chr4 173477707 173477731 -10810931 + AT_rich Low_complexity Low_complexity 1 24 0 619 316 91 54 chr4 173478457 173478981 -10809681 + L2 LINE L2 2778 3312 -1 243 221 52 26 chr4 173479015 173479092 -10809570 - L1ME LINE L1 -393 5728 5650 211 317 49 0 chr4 173480669 173480751 -10807911 - L2 LINE L2 0 3272 3187 230 333 179 5 chr4 173480997 173481198 -10807464 - L2 LINE L2 -480 2834 2599 197 260 20 0 chr4 173481242 173481292 -10807370 - L2 LINE L2 -824 2490 2440 21 0 0 0 chr4 173481664 173481685 -10806977 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr4 173481721 173481753 -10806909 + AT_rich Low_complexity Low_complexity 1 32 0 356 221 29 79 chr4 173482252 173482392 -10806270 - Charlie8 DNA MER1_type -2238 179 47 266 290 54 48 chr4 173482622 173482808 -10805854 + MIR3 SINE MIR 17 203 -5 2168 78 51 0 chr4 173483134 173483429 -10805233 + AluY SINE Alu 1 310 -1 1708 169 24 0 chr4 173484470 173484765 -10803897 + AluJo SINE Alu 1 302 -10 2459 158 21 25 chr4 173484835 173485316 -10803346 - L1MC1 LINE L1 -40 6573 6095 579 129 30 0 chr4 173485327 173485428 -10803234 - L1MB4 LINE L1 0 6180 6077 446 178 0 0 chr4 173485428 173485501 -10803161 + FRAM SINE Alu 73 145 -31 938 154 13 13 chr4 173485502 173485737 -10802925 + GA-rich Low_complexity Low_complexity 1 235 0 556 204 0 35 chr4 173485758 173485900 -10802762 + L1 LINE L1 5205 5341 -805 2873 228 28 71 chr4 173485900 173486607 -10802055 - L1MB3 LINE L1 -312 6107 5484 1405 196 57 0 chr4 173486607 173486887 -10801775 - AluJo SINE Alu -6 296 1 2873 228 28 71 chr4 173486887 173487415 -10801247 - L1MB3 LINE L1 -935 5484 4935 11715 188 64 8 chr4 173487469 173490869 -10797793 - L1MB3 LINE L1 -2743 3639 48 3096 210 32 4 chr4 173490866 173491980 -10796682 - L1MC1 LINE L1 -500 6124 4976 * 2403 169 78 2 chr4 173491982 173492456 -10796206 - L1MC1 LINE L1 -5435 991 482 5070 168 12 8 chr4 173492457 173493988 -10794674 + L1PB4 LINE L1 4636 6299 -1 2416 212 8 4 chr4 173493986 173494462 -10794200 - L1MC1 LINE L1 -5932 494 17 * 23 33 0 0 chr4 173495066 173495096 -10793566 + AT_rich Low_complexity Low_complexity 1 30 0 438 20 0 0 chr4 173495789 173495840 -10792822 + (TG)n Simple_repeat Simple_repeat 2 52 0 22 0 0 0 chr4 173496275 173496297 -10792365 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr4 173496689 173496718 -10791944 + AT_rich Low_complexity Low_complexity 1 29 0 357 288 14 14 chr4 173497822 173497968 -10790694 + GA-rich Low_complexity Low_complexity 3 148 0 285 315 62 92 chr4 173498520 173498955 -10789707 + L2 LINE L2 2228 2649 -665 185 394 92 14 chr4 173498994 173499136 -10789526 + L2 LINE L2 2912 3064 -208 214 169 14 56 chr4 173500021 173500092 -10788570 + A-rich Low_complexity Low_complexity 5 72 0 6464 207 65 3 chr4 173500149 173500490 -10788172 - L1M4 LINE L1 -1424 4722 4404 2103 138 0 0 chr4 173500490 173500801 -10787861 - AluSx SINE Alu -1 311 1 6464 207 65 3 chr4 173500801 173502413 -10786249 - L1M4 LINE L1 -1742 4404 2636 3194 127 22 6 chr4 173502413 173502916 -10785746 + MER9 LTR ERVK 1 511 0 2018 172 52 35 chr4 173503061 173503486 -10785176 - MSTB1 LTR MaLR 0 432 1 436 188 62 69 chr4 173504190 173504334 -10784328 + L1ME3A LINE L1 5881 6023 -147 633 219 8 16 chr4 173505130 173505253 -10783409 - FLAM_A SINE Alu -8 125 4 26 0 0 0 chr4 173505391 173505417 -10783245 + AT_rich Low_complexity Low_complexity 1 26 0 1905 149 14 0 chr4 173505417 173505706 -10782956 + AluSx SINE Alu 1 293 -19 254 265 61 46 chr4 173505713 173505909 -10782753 + L1MDb LINE L1 1181 1379 -5050 336 349 118 9 chr4 173505924 173506153 -10782509 + L1MDb LINE L1 1235 1488 -4938 249 289 77 58 chr4 173506172 173506380 -10782282 + L1MDb LINE L1 1737 1948 -4659 21 0 0 0 chr4 173506437 173506458 -10782204 + AT_rich Low_complexity Low_complexity 1 21 0 336 300 98 49 chr4 173506464 173506751 -10781911 + L1MDb LINE L1 2086 2386 -4221 21 0 0 0 chr4 173506758 173506779 -10781883 + AT_rich Low_complexity Low_complexity 1 21 0 2510 276 86 33 chr4 173506864 173508757 -10779905 + L1MDb LINE L1 2518 4310 -2140 306 20 59 0 chr4 173508757 173508808 -10779854 + (TA)n Simple_repeat Simple_repeat 1 54 0 2510 276 86 33 chr4 173508808 173509011 -10779651 + L1MDb LINE L1 4310 4501 -1949 1998 178 60 22 chr4 173509011 173509427 -10779235 + MSTB1 LTR MaLR 1 432 0 2510 276 86 33 chr4 173509427 173510175 -10778487 + L1MDb LINE L1 4501 6282 -168 22 0 0 0 chr4 173510447 173510469 -10778193 + AT_rich Low_complexity Low_complexity 1 22 0 467 311 24 48 chr4 173511550 173511798 -10776864 + MLT1L LTR MaLR 5 246 -369 325 368 20 72 chr4 173512178 173512428 -10776234 - L2 LINE L2 -431 2883 2647 1227 286 79 41 chr4 173512940 173513423 -10775239 + L2 LINE L2 1920 2420 -894 2091 147 15 77 chr4 173513458 173513914 -10774748 + MSTC LTR MaLR 1 428 0 3162 159 42 8 chr4 173514190 173514812 -10773850 + L1MA5 LINE L1 5657 6299 -1 23 33 0 0 chr4 173514881 173514911 -10773751 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 173515302 173515324 -10773338 + AT_rich Low_complexity Low_complexity 1 22 0 1031 201 46 21 chr4 173515324 173515607 -10773055 + L1ME1 LINE L1 5691 5980 -186 875 182 20 25 chr4 173515768 173515971 -10772691 + L1ME1 LINE L1 5779 5980 -186 239 325 103 78 chr4 173515995 173516315 -10772347 + MLT1K LTR MaLR 255 582 -6 234 0 0 0 chr4 173516744 173516770 -10771892 + (A)n Simple_repeat Simple_repeat 1 26 0 229 253 0 35 chr4 173517444 173517531 -10771131 + A-rich Low_complexity Low_complexity 2 85 0 240 271 12 0 chr4 173517612 173517697 -10770965 + L1MC4 LINE L1 6618 6703 -1339 21 0 0 0 chr4 173517697 173517718 -10770944 + AT_rich Low_complexity Low_complexity 1 21 0 1283 187 26 30 chr4 173517935 173518203 -10770459 - AluJo SINE Alu -14 298 32 329 258 50 57 chr4 173518223 173518382 -10770280 + HAL1b LINE L1 514 671 -677 258 245 0 0 chr4 173519036 173519085 -10769577 - L2 LINE L2 0 3272 3224 198 0 0 0 chr4 173519093 173519115 -10769547 + (A)n Simple_repeat Simple_repeat 1 22 0 1530 192 7 17 chr4 173519177 173519468 -10769194 + AluJo SINE Alu 7 294 -18 197 105 0 26 chr4 173519490 173519528 -10769134 + (TA)n Simple_repeat Simple_repeat 2 38 0 7561 27 5 0 chr4 173519661 173520819 -10767843 + L1PA4 LINE L1 4991 6152 -3 250 359 122 13 chr4 173520837 173520993 -10767669 - L2 LINE L2 -252 3061 2889 407 335 102 28 chr4 173521434 173521610 -10767052 + MER5A DNA MER1_type 1 189 0 2259 102 20 0 chr4 173522311 173522614 -10766048 + AluSg SINE Alu 1 309 -1 225 0 0 0 chr4 173523084 173523109 -10765553 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 1533 161 57 23 chr4 173523110 173523409 -10765253 + AluJo SINE Alu 1 309 -3 205 305 17 0 chr4 173523853 173523912 -10764750 + MIR3 SINE MIR 121 180 -28 23 0 0 0 chr4 173524658 173524681 -10763981 + AT_rich Low_complexity Low_complexity 1 23 0 2137 105 6 13 chr4 173525295 173525608 -10763054 - AluSx SINE Alu -1 311 1 25 75 0 0 chr4 173527140 173527193 -10761469 + AT_rich Low_complexity Low_complexity 1 53 0 22 0 0 0 chr4 173527238 173527260 -10761402 + AT_rich Low_complexity Low_complexity 1 22 0 35 0 0 0 chr4 173527964 173527999 -10760663 + GC_rich Low_complexity Low_complexity 1 35 0 218 375 0 12 chr4 173528985 173529065 -10759597 + L2 LINE L2 3194 3272 0 225 346 56 25 chr4 173529188 173529350 -10759312 - L2 LINE L2 -190 3082 2916 1689 126 84 0 chr4 173529924 173530210 -10758452 + AluSq SINE Alu 1 310 -3 29 60 0 0 chr4 173531052 173531102 -10757560 + AT_rich Low_complexity Low_complexity 1 50 0 1971 145 0 3 chr4 173531279 173531582 -10757080 - AluSx SINE Alu 0 304 3 1466 126 0 9 chr4 173531809 173532024 -10756638 - AluSq SINE Alu -100 213 1 4076 230 26 12 chr4 173532024 173533841 -10754821 - L1MC2 LINE L1 -174 6170 4330 318 325 134 12 chr4 173534134 173534380 -10754282 + L2 LINE L2 516 791 -2523 374 255 163 60 chr4 173534411 173534662 -10754000 - LTR40b LTR ERVL -6 456 180 614 283 75 102 chr4 173534950 173534986 -10753676 + L2 LINE L2 808 843 -2471 1297 134 26 30 chr4 173534986 173535217 -10753445 + MER30 DNA MER1_type 1 230 0 614 283 75 102 chr4 173535217 173535622 -10753040 + L2 LINE L2 843 1237 -2077 2126 257 40 77 chr4 173535766 173536297 -10752365 + MLT2B3 LTR ERVL 1 511 -43 405 0 0 0 chr4 173536297 173536342 -10752320 + (TCTA)n Simple_repeat Simple_repeat 3 47 0 2126 257 40 77 chr4 173536342 173536385 -10752277 + MLT2B3 LTR ERVL 511 554 0 5448 226 62 0 chr4 173536729 173537829 -10750833 + L1PA13 LINE L1 1 1168 -5619 250 301 75 30 chr4 173538131 173538330 -10750332 - L1MEd LINE L1 -4924 1195 988 1493 189 62 9 chr4 173538872 173539202 -10749460 - MER63 DNA MER1_type 0 1062 715 2397 171 21 5 chr4 173539202 173539628 -10749034 - MER83 LTR ERV1 0 448 16 23 54 0 0 chr4 173539763 173539800 -10748862 + AT_rich Low_complexity Low_complexity 1 37 0 330 281 48 34 chr4 173540674 173540820 -10747842 - MLT1K LTR MaLR -7 581 434 324 359 9 0 chr4 173541284 173541390 -10747272 - MER81 DNA DNA -7 107 1 1969 144 3 0 chr4 173541995 173542287 -10746375 + AluSx SINE Alu 1 293 -19 244 375 77 50 chr4 173542450 173542773 -10745889 + L2 LINE L2 2941 3272 0 23 33 0 0 chr4 173542877 173542907 -10745755 + AT_rich Low_complexity Low_complexity 1 30 0 7662 128 29 72 chr4 173543831 173545431 -10743231 - LTR49-int LTR ERV1 -1074 5257 3726 772 187 49 53 chr4 173545447 173545818 -10742844 - LTR49-int LTR ERV1 -1987 3594 2679 1818 189 5 52 chr4 173545821 173546229 -10742433 - LTR49-int LTR ERV1 -2898 3433 3045 250 318 197 18 chr4 173546315 173546761 -10741901 - L2 LINE L2 -1129 2185 1660 1289 232 47 3 chr4 173547298 173547660 -10741002 - L1MCa LINE L1 -2306 4120 3743 1125 225 39 54 chr4 173547661 173547995 -10740667 - MLT1A1 LTR MaLR 0 365 37 34 24 0 0 chr4 173547995 173548036 -10740626 + AT_rich Low_complexity Low_complexity 1 41 0 1597 183 18 4 chr4 173548043 173548316 -10740346 - AluJb SINE Alu -27 285 9 1191 255 10 29 chr4 173548370 173548537 -10740125 - L1MCa LINE L1 -2681 3745 3576 2255 115 0 0 chr4 173548537 173548842 -10739820 + AluSg SINE Alu 1 305 -5 1191 255 10 29 chr4 173548842 173549160 -10739502 - L1MCa LINE L1 -2850 3576 3269 1639 248 43 14 chr4 173549186 173549699 -10738963 - L1MCa LINE L1 -3314 3112 2585 2111 114 33 15 chr4 173549725 173550058 -10738604 + MLT1B LTR MaLR 52 390 0 2445 167 121 60 chr4 173550066 173550126 -10738536 - L1MCa LINE L1 -3845 2581 2526 234 0 0 0 chr4 173550126 173550152 -10738510 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2445 167 121 60 chr4 173550152 173551249 -10737413 - L1MCa LINE L1 -3900 2526 1259 18591 185 16 25 chr4 173551352 173553131 -10735531 + L1P4 LINE L1 1335 3128 -3691 423 0 0 0 chr4 173553131 173553178 -10735484 + (TG)n Simple_repeat Simple_repeat 2 48 0 18591 185 16 25 chr4 173553178 173556484 -10732178 + L1P4 LINE L1 3128 6389 -430 1320 221 69 25 chr4 173556584 173557018 -10731644 - Charlie1b DNA MER1_type -69 454 2 507 293 83 26 chr4 173558216 173558445 -10730217 + MIR SINE MIR 20 261 -1 181 163 265 0 chr4 173558751 173558800 -10729862 + MER5A DNA MER1_type 51 112 -77 872 237 0 9 chr4 173559041 173559252 -10729410 - MER3 DNA MER1_type 0 209 1 1100 198 5 0 chr4 173559260 173559452 -10729210 - MER58A DNA MER1_type 0 224 32 1895 230 63 0 chr4 173559485 173559976 -10728686 - MER63C DNA MER1_type -405 525 4 325 306 25 25 chr4 173560097 173560218 -10728444 + LTR16B LTR ERVL 1 121 -343 24 0 0 0 chr4 173560485 173560509 -10728153 + AT_rich Low_complexity Low_complexity 1 24 0 201 74 0 0 chr4 173561157 173561184 -10727478 + (A)n Simple_repeat Simple_repeat 1 27 0 21 36 0 0 chr4 173561296 173561324 -10727338 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 173561656 173561679 -10726983 + AT_rich Low_complexity Low_complexity 1 23 0 556 191 146 92 chr4 173561891 173561976 -10726686 - LTR37A LTR ERV1 -94 332 253 1996 95 0 7 chr4 173561976 173562303 -10726359 - AluY SINE Alu 0 325 1 556 191 146 92 chr4 173562303 173562510 -10726152 - LTR37A LTR ERV1 -173 253 23 2099 95 25 3 chr4 173562801 173563086 -10725576 + AluSg SINE Alu 6 296 -14 1455 217 14 0 chr4 173563091 173563372 -10725290 - AluJo SINE Alu -25 287 3 189 0 0 0 chr4 173563420 173563441 -10725221 + (TTG)n Simple_repeat Simple_repeat 1 21 0 501 274 107 40 chr4 173564841 173565093 -10723569 + Charlie8 DNA MER1_type 2 270 -2147 1848 163 27 0 chr4 173565105 173565277 -10723385 - AluSx SINE Alu -3 309 124 291 54 0 0 chr4 173565277 173565314 -10723348 + (TTTTA)n Simple_repeat Simple_repeat 2 38 0 1848 163 27 0 chr4 173565314 173565442 -10723220 - AluSx SINE Alu -188 124 1 198 229 100 29 chr4 173565995 173566065 -10722597 + MIR SINE MIR 69 143 -119 21 0 0 0 chr4 173566737 173566758 -10721904 + AT_rich Low_complexity Low_complexity 1 21 0 2221 78 3 26 chr4 173567918 173568226 -10720436 + AluY SINE Alu 1 301 -10 346 333 0 97 chr4 173568842 173569007 -10719655 - L2 LINE L2 0 3272 3124 1991 147 0 3 chr4 173569399 173569706 -10718956 + AluJb SINE Alu 1 306 -6 960 150 0 0 chr4 173569863 173570044 -10718618 + AluSg/x SINE Alu 137 317 0 2000 136 11 0 chr4 173570117 173570432 -10718230 - AluSx SINE Alu 0 318 1 182 268 0 0 chr4 173571427 173571468 -10717194 - MIR SINE MIR -7 255 215 325 293 30 10 chr4 173571814 173571913 -10716749 - MIR3 SINE MIR -43 165 65 254 113 19 0 chr4 173574471 173574524 -10714138 - L1MC2 LINE L1 -1 6343 6290 1671 57 27 4 chr4 173574624 173574942 -10713720 - L1P3 LINE L1 -671 5483 5160 444 328 23 6 chr4 173574951 173575122 -10713540 + L2 LINE L2 2996 3169 -144 671 154 21 35 chr4 173575137 173575476 -10713186 + (TCTA)n Simple_repeat Simple_repeat 1 334 0 587 98 11 0 chr4 173575503 173575595 -10713067 + (TCCA)n Simple_repeat Simple_repeat 1 93 0 226 71 24 24 chr4 173575666 173575708 -10712954 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 414 254 74 41 chr4 173575720 173575842 -10712820 + L2 LINE L2 3188 3313 0 1683 167 3 35 chr4 173576490 173576807 -10711855 - AluJb SINE Alu -5 307 1 334 184 184 20 chr4 173578562 173578660 -10710002 - L1MC4 LINE L1 -1 8041 7928 2138 210 62 68 chr4 173578747 173578869 -10709793 - L1MC4 LINE L1 -134 7908 7787 646 202 0 16 chr4 173578869 173578993 -10709669 + FLAM_A SINE Alu 1 122 -11 2138 210 62 68 chr4 173578993 173579633 -10709029 - L1MC4 LINE L1 -255 7787 7151 24 0 0 0 chr4 173579850 173579874 -10708788 + AT_rich Low_complexity Low_complexity 1 24 0 22 80 0 0 chr4 173580388 173580438 -10708224 + AT_rich Low_complexity Low_complexity 1 50 0 1409 210 19 19 chr4 173580447 173580770 -10707892 + AluJo SINE Alu 12 334 0 4406 185 5 20 chr4 173581449 173582135 -10706527 - L1MB3 LINE L1 -7 6176 5544 2694 23 0 3 chr4 173582135 173582441 -10706221 - AluY SINE Alu -6 305 1 4406 185 5 20 chr4 173582441 173582796 -10705866 - L1MB3 LINE L1 -639 5544 5185 640 249 132 86 chr4 173583672 173584126 -10704536 - MLT1H LTR MaLR 0 549 75 727 309 103 39 chr4 173584218 173584733 -10703929 + MLT1K LTR MaLR 37 584 -4 1754 175 0 14 chr4 173585501 173585793 -10702869 + AluJo SINE Alu 1 288 -24 358 373 63 0 chr4 173585816 173585958 -10702704 - L2 LINE L2 -42 3230 3080 288 356 81 67 chr4 173586091 173586448 -10702214 - L2 LINE L2 -337 2977 2616 2575 52 0 3 chr4 173586698 173587005 -10701657 - AluY SINE Alu -5 306 1 271 223 126 10 chr4 173587133 173587236 -10701426 + MIR SINE MIR 148 262 0 2461 67 3 0 chr4 173588168 173588468 -10700194 + AluSp SINE Alu 1 301 -12 238 350 37 12 chr4 173588532 173588695 -10699967 + MIR SINE MIR 88 254 -8 346 235 208 34 chr4 173588799 173588915 -10699747 - MER5B DNA MER1_type -1 177 28 1780 134 41 21 chr4 173588915 173589206 -10699456 + AluJo SINE Alu 6 302 -10 346 235 208 34 chr4 173589206 173589238 -10699424 - MER5B DNA MER1_type -150 28 3 377 80 53 0 chr4 173589865 173589940 -10698722 + (TA)n Simple_repeat Simple_repeat 2 80 0 1801 42 0 0 chr4 173589951 173590166 -10698496 - L1PA5 LINE L1 -12 6142 5928 4328 28 0 2 chr4 173590166 173590670 -10697992 + L1PA5 LINE L1 5391 5893 -261 22 0 0 0 chr4 173591111 173591133 -10697529 + AT_rich Low_complexity Low_complexity 1 22 0 4639 182 60 25 chr4 173591140 173592224 -10696438 + L1MC2 LINE L1 5204 6326 -18 328 167 13 13 chr4 173592226 173592304 -10696358 + GA-rich Low_complexity Low_complexity 3 80 0 1789 167 48 82 chr4 173592307 173592632 -10696030 + Charlie1 DNA MER1_type 594 902 -1859 2139 125 10 3 chr4 173592632 173592943 -10695719 + AluSq SINE Alu 1 313 0 1789 167 48 82 chr4 173592943 173593054 -10695608 + Charlie1 DNA MER1_type 902 1015 -1746 322 248 50 33 chr4 173593053 173593174 -10695488 + Charlie1 DNA MER1_type 2638 2760 -1 * 449 322 0 0 chr4 173593352 173593532 -10695130 + T-rich Low_complexity Low_complexity 1 180 0 1708 138 40 3 chr4 173594831 173595139 -10693523 + L1PA16 LINE L1 5684 6003 -163 204 109 36 18 chr4 173595149 173595204 -10693458 + (TA)n Simple_repeat Simple_repeat 2 57 0 869 137 14 0 chr4 173595213 173595352 -10693310 + L1PA16 LINE L1 6016 6156 -10 500 192 29 10 chr4 173595360 173595464 -10693198 + MER93b LTR ERV1 242 347 -26 354 23 0 0 chr4 173596321 173596364 -10692298 + (CA)n Simple_repeat Simple_repeat 2 44 0 206 136 34 51 chr4 173596709 173596768 -10691894 + A-rich Low_complexity Low_complexity 3 60 0 3429 132 32 23 chr4 173597053 173597653 -10691009 + LTR49-int LTR ERV1 5727 6331 0 2913 160 56 12 chr4 173597654 173598223 -10690439 + LTR49 LTR ERV1 2 595 0 1831 101 134 4 chr4 173598246 173598523 -10690139 + AluSq SINE Alu 1 313 0 2417 65 0 26 chr4 173599091 173599397 -10689265 + AluY SINE Alu 1 298 -13 715 262 81 24 chr4 173599472 173599720 -10688942 + MIR SINE MIR 1 262 0 1609 178 0 24 chr4 173599889 173600181 -10688481 - AluJb SINE Alu -15 297 13 24 0 0 0 chr4 173600704 173600728 -10687934 + AT_rich Low_complexity Low_complexity 1 24 0 328 194 45 0 chr4 173600728 173600795 -10687867 - MIR3 SINE MIR -25 183 114 201 180 0 0 chr4 173600901 173600951 -10687711 + (TG)n Simple_repeat Simple_repeat 1 50 0 196 109 22 22 chr4 173605112 173605158 -10683504 + (ATATG)n Simple_repeat Simple_repeat 3 48 0 2021 128 7 13 chr4 173605413 173605719 -10682943 + AluSx SINE Alu 1 304 -8 227 317 37 0 chr4 173606274 173606356 -10682306 + MIR3 SINE MIR 85 169 -39 642 233 113 60 chr4 173606577 173606979 -10681683 - MLT1F LTR MaLR 0 590 118 333 346 34 22 chr4 173608151 173608330 -10680332 - MER5A DNA MER1_type -8 181 1 328 200 0 0 chr4 173608414 173608474 -10680188 + Tigger1 DNA MER2_type 1 60 -2358 6279 108 23 31 chr4 173608503 173609491 -10679171 + Tigger1 DNA MER2_type 1426 2405 -13 206 368 102 0 chr4 173609623 173609789 -10678873 + L2 LINE L2 1726 1908 -1406 213 132 0 26 chr4 173610748 173610786 -10677876 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 203 149 0 21 chr4 173610787 173610834 -10677828 + (GGGA)n Simple_repeat Simple_repeat 1 46 0 207 253 20 111 chr4 173611309 173611408 -10677254 + MIR SINE MIR 32 121 -87 22 35 0 0 chr4 173611735 173611764 -10676898 + AT_rich Low_complexity Low_complexity 1 29 0 366 61 0 0 chr4 173611852 173611901 -10676761 + (TG)n Simple_repeat Simple_repeat 2 50 0 2057 95 25 38 chr4 173612473 173612788 -10675874 + AluSq SINE Alu 1 311 -2 25 51 0 0 chr4 173614304 173614343 -10674319 + AT_rich Low_complexity Low_complexity 1 39 0 21 95 0 0 chr4 173615968 173616031 -10672631 + AT_rich Low_complexity Low_complexity 1 63 0 294 50 0 0 chr4 173616292 173616332 -10672330 + (CA)n Simple_repeat Simple_repeat 2 41 0 238 356 39 0 chr4 173616802 173616906 -10671756 - L2 LINE L2 -299 2973 2866 1429 181 13 67 chr4 173617192 173617506 -10671156 - AluJo SINE Alu -15 297 1 286 190 0 0 chr4 173617593 173617651 -10671011 + L1M4 LINE L1 3875 3932 -2214 2059 134 0 3 chr4 173617654 173617946 -10670716 + AluSg SINE Alu 1 291 -19 613 309 75 19 chr4 173617951 173618468 -10670194 + L1M4 LINE L1 3903 4448 -1698 214 200 0 0 chr4 173618550 173618590 -10670072 + (TA)n Simple_repeat Simple_repeat 2 41 0 501 274 170 61 chr4 173618811 173619318 -10669344 + L1M4 LINE L1 4769 5330 -816 2028 121 0 3 chr4 173619334 173619642 -10669020 + AluY SINE Alu 1 307 0 201 39 0 0 chr4 173619746 173619772 -10668890 + (TG)n Simple_repeat Simple_repeat 2 27 0 294 50 0 0 chr4 173619775 173619815 -10668847 + (GA)n Simple_repeat Simple_repeat 2 41 0 3166 245 74 70 chr4 173619818 173622541 -10666121 + L1ME1 LINE L1 3444 6162 -4 234 319 119 48 chr4 173623330 173623417 -10665245 + MIR SINE MIR 37 116 -146 1481 151 26 15 chr4 173623417 173623688 -10664974 - AluJo SINE Alu -7 305 32 234 319 119 48 chr4 173623688 173623810 -10664852 + MIR SINE MIR 116 261 -1 467 51 0 0 chr4 173624187 173624246 -10664416 - L1PA6 LINE L1 -5 6149 6091 921 77 0 14 chr4 173624247 173624387 -10664275 + L1PA5 LINE L1 5849 5980 -174 367 358 17 40 chr4 173624938 173625111 -10663551 - MER5B DNA MER1_type 0 178 10 1777 128 78 42 chr4 173625350 173625710 -10662952 + THE1C LTR MaLR 3 375 0 1953 116 26 16 chr4 173676459 173676762 -10611900 - AluSq SINE Alu -7 306 1 181 346 99 12 chr4 173677214 173677295 -10611367 - L2 LINE L2 -33 3280 3193 194 287 69 30 chr4 173678359 173678460 -10610202 - MIR SINE MIR -102 160 56 198 372 0 21 chr4 173680144 173680238 -10608424 + MER5A DNA MER1_type 43 134 -55 293 125 38 12 chr4 173680371 173680451 -10608211 + (TA)n Simple_repeat Simple_repeat 1 82 0 218 201 67 15 chr4 173680470 173680604 -10608058 + (TA)n Simple_repeat Simple_repeat 2 142 0 521 303 32 5 chr4 173680628 173680816 -10607846 - MLT1J1 LTR MaLR -215 231 63 645 343 112 27 chr4 173681052 173681617 -10607045 - L2 LINE L2 0 3313 2698 1876 194 14 64 chr4 173681632 173682055 -10606607 + MLT1D LTR MaLR 3 404 -101 280 197 16 0 chr4 173682891 173682952 -10605710 - MER116 DNA Mariner -15 65 4 525 298 105 13 chr4 173686342 173686580 -10602082 - MIR SINE MIR 0 262 3 2376 68 7 0 chr4 173689327 173689635 -10599027 - AluY SINE Alu -1 310 1 209 208 245 0 chr4 173689755 173689808 -10598854 - MIR SINE MIR 0 262 197 230 222 0 0 chr4 173690841 173690886 -10597776 + L2 LINE L2 3210 3254 -18 378 0 0 0 chr4 173691192 173691234 -10597428 + (ATG)n Simple_repeat Simple_repeat 3 44 0 202 200 0 31 chr4 173691243 173691308 -10597354 + GA-rich Low_complexity Low_complexity 3 65 0 234 212 30 0 chr4 173692957 173693023 -10595639 + MER116 DNA Mariner 1 68 -12 1921 18 0 0 chr4 173694514 173694732 -10593930 + AluYb8 SINE Alu 90 307 -11 541 257 62 56 chr4 173696289 173696468 -10592194 - MER5A DNA MER1_type -1 188 9 324 306 35 42 chr4 173697865 173698009 -10590653 + MIR SINE MIR 58 200 -62 803 212 143 114 chr4 173698384 173698618 -10590044 - MLT1F1 LTR MaLR -143 424 169 1525 189 18 14 chr4 173698618 173698931 -10589731 - AluJo SINE Alu 0 314 1 803 212 143 114 chr4 173698931 173699106 -10589556 - MLT1F1 LTR MaLR -398 169 1 728 336 9 0 chr4 173700084 173700310 -10588352 - MIR SINE MIR -3 259 32 2028 125 4 0 chr4 173700723 173701034 -10587628 + AluSx SINE Alu 1 312 0 1041 178 0 0 chr4 173701333 173701502 -10587160 - AluJb SINE Alu -143 169 1 207 69 0 0 chr4 173702610 173702639 -10586023 + (TG)n Simple_repeat Simple_repeat 1 29 0 299 330 11 0 chr4 173702950 173703041 -10585621 + MIR3 SINE MIR 68 159 -49 249 221 0 0 chr4 173705136 173705240 -10583422 + (CA)n Simple_repeat Simple_repeat 1 104 0 976 179 16 0 chr4 173706429 173706613 -10582049 - L1MB3 LINE L1 -8 6175 5989 2148 119 0 13 chr4 173706641 173706944 -10581718 - AluSx SINE Alu -13 299 1 22 35 0 0 chr4 173707078 173707107 -10581555 + AT_rich Low_complexity Low_complexity 1 29 0 1112 179 80 89 chr4 173707227 173707337 -10581325 + AluJo SINE Alu 1 111 -191 2381 100 3 0 chr4 173707337 173707646 -10581016 - AluSp SINE Alu -3 310 1 1112 179 80 89 chr4 173707646 173707837 -10580825 + AluJo SINE Alu 111 299 -3 2343 52 13 10 chr4 173708478 173708788 -10579874 - AluY SINE Alu 0 311 1 192 307 167 33 chr4 173708947 173709097 -10579565 - L2 LINE L2 -1 3271 3102 186 299 126 23 chr4 173709884 173709971 -10578691 + L2 LINE L2 2944 3039 -274 258 255 245 0 chr4 173710135 173710229 -10578433 + L2 LINE L2 3197 3313 0 246 182 36 0 chr4 173710231 173710286 -10578376 + (TGAA)n Simple_repeat Simple_repeat 4 60 0 266 324 176 14 chr4 173710946 173711088 -10577574 - L2 LINE L2 -6 3266 3102 700 264 70 41 chr4 173711100 173711342 -10577320 - MIR SINE MIR 0 262 14 2360 97 7 0 chr4 173712118 173712428 -10576234 - AluSx SINE Alu 0 312 1 377 302 84 59 chr4 173712519 173713009 -10575653 - L1ME LINE L1 -404 5758 5257 449 331 69 20 chr4 173713052 173713605 -10575057 - L1ME LINE L1 -1460 4686 4107 338 325 48 14 chr4 173713610 173713902 -10574760 - L1ME LINE L1 -2073 4073 3772 349 272 99 47 chr4 173714115 173714285 -10574377 + L1ME4a LINE L1 5874 6061 -60 1676 59 8 25 chr4 173714285 173714521 -10574141 - L1PA8 LINE L1 0 6172 5941 349 272 99 47 chr4 173714521 173714582 -10574080 + L1ME4a LINE L1 6061 6117 -4 349 304 11 0 chr4 173714712 173714810 -10573852 - MIR SINE MIR -67 141 43 199 339 222 5 chr4 173716345 173716534 -10572128 - MIR SINE MIR -5 257 28 25 65 0 0 chr4 173716748 173716794 -10571868 + AT_rich Low_complexity Low_complexity 1 46 0 313 324 38 43 chr4 173716994 173717204 -10571458 - L2 LINE L2 -2 3311 3103 1426 171 76 0 chr4 173717527 173717814 -10570848 + AluJo SINE Alu 1 307 0 243 88 0 0 chr4 173717907 173717941 -10570721 + (TC)n Simple_repeat Simple_repeat 1 34 0 368 300 0 17 chr4 173718633 173718753 -10569909 - MIR SINE MIR -38 224 107 888 252 44 24 chr4 173718923 173719173 -10569489 - MIR SINE MIR 0 262 8 293 271 143 8 chr4 173719375 173719508 -10569154 + MIR SINE MIR 105 255 -7 24 85 0 0 chr4 173720424 173720483 -10568179 + AT_rich Low_complexity Low_complexity 1 59 0 1463 172 7 38 chr4 173720551 173720861 -10567801 - AluJb SINE Alu 0 301 1 499 99 36 9 chr4 173721278 173721389 -10567273 + (TA)n Simple_repeat Simple_repeat 2 115 0 729 272 39 55 chr4 173722053 173722310 -10566352 - MIR SINE MIR 0 262 10 378 305 142 13 chr4 173724778 173724878 -10563784 - L1M4 LINE L1 -756 5390 5304 1787 99 7 70 chr4 173724878 173725162 -10563500 + AluSx SINE Alu 33 298 -14 378 305 142 13 chr4 173725162 173725300 -10563362 - L1M4 LINE L1 -842 5304 5121 226 229 0 0 chr4 173725483 173725531 -10563131 - L2 LINE L2 -15 3298 3251 827 194 37 94 chr4 173725557 173725832 -10562830 + MER4C LTR ERV1 1 82 -383 2084 110 0 4 chr4 173725832 173726137 -10562525 + AluSx SINE Alu 4 307 0 827 194 37 94 chr4 173726137 173726501 -10562161 + MER4C LTR ERV1 82 465 0 878 299 80 14 chr4 173726570 173727049 -10561613 - L2 LINE L2 -158 3155 2652 410 275 58 35 chr4 173727558 173727729 -10560933 - MIR SINE MIR 0 262 88 2176 136 0 0 chr4 173727769 173728078 -10560584 - AluSx SINE Alu -2 310 2 901 179 111 0 chr4 173729487 173729677 -10558985 + MER58A DNA MER1_type 2 212 -12 580 267 55 15 chr4 173730243 173730445 -10558217 - MER63A DNA MER1_type 0 210 1 22 35 0 0 chr4 173730968 173730997 -10557665 + AT_rich Low_complexity Low_complexity 1 29 0 207 264 74 58 chr4 173732016 173732137 -10556525 - MIR3 SINE MIR -23 185 63 1062 212 142 36 chr4 173732471 173732926 -10555736 - MER39 LTR ERV1 0 707 5 979 230 91 115 chr4 173734739 173734954 -10553708 + MER34B LTR ERV1 6 225 -340 1561 84 40 26 chr4 173734954 173735181 -10553481 + MER30 DNA MER1_type 1 230 0 979 230 91 115 chr4 173735181 173735539 -10553123 + MER34B LTR ERV1 225 565 0 238 200 0 44 chr4 173735967 173736057 -10552605 + (TATATG)n Simple_repeat Simple_repeat 5 90 0 7306 181 49 67 chr4 173736471 173737559 -10551103 - L1MA1 LINE L1 0 6302 5196 2238 195 35 72 chr4 173737559 173738194 -10550468 - LTR9 LTR ERV1 -1 611 1 7306 181 49 67 chr4 173738194 173738524 -10550138 - L1MA1 LINE L1 -1106 5196 4862 2020 127 40 3 chr4 173738524 173738823 -10549839 + AluSx SINE Alu 1 310 -2 7306 181 49 67 chr4 173738823 173740060 -10548602 - L1MA1 LINE L1 -1440 4862 3604 763 85 8 8 chr4 173740060 173740178 -10548484 + (TTTCC)n Simple_repeat Simple_repeat 3 120 0 2029 106 33 7 chr4 173740179 173740454 -10548208 - AluSq SINE Alu -31 282 1 7306 181 49 67 chr4 173740454 173741023 -10547639 - L1MA1 LINE L1 -1028 5274 4696 439 212 77 12 chr4 173741026 173741196 -10547466 - L1ME LINE L1 -728 5434 5254 343 303 34 8 chr4 173741451 173741570 -10547092 + L2 LINE L2 3192 3313 0 214 301 11 32 chr4 173741623 173741716 -10546946 - L2 LINE L2 -583 2731 2641 361 317 80 25 chr4 173742109 173742308 -10546354 - L2 LINE L2 -475 2839 2630 959 276 114 25 chr4 173742967 173743445 -10545217 + LTR33A LTR ERVL 30 523 0 209 184 0 41 chr4 173743797 173743846 -10544816 + A-rich Low_complexity Low_complexity 3 49 0 242 139 0 0 chr4 173744932 173744975 -10543687 + L1ME4a LINE L1 6063 6105 -16 241 283 80 44 chr4 173745519 173745632 -10543030 + MIR SINE MIR 29 145 -117 22 56 0 0 chr4 173746526 173746562 -10542100 + AT_rich Low_complexity Low_complexity 1 36 0 2188 229 49 68 chr4 173748837 173749452 -10539210 - MER90 LTR ERV1 -1 613 11 1589 165 52 11 chr4 173749600 173749964 -10538698 + AluJo SINE Alu 5 379 0 515 311 65 40 chr4 173750002 173750498 -10538164 - L1MC/D LINE L1 -2017 5774 5267 1024 200 30 30 chr4 173750578 173750596 -10538066 - AluJb SINE Alu -1 311 294 2363 60 7 0 chr4 173750596 173750918 -10537744 - AluY SINE Alu 0 311 1 1024 200 30 30 chr4 173750918 173751129 -10537533 - AluJb SINE Alu -17 295 82 571 298 148 50 chr4 173751146 173751827 -10536835 - L1MC/D LINE L1 -978 5151 4404 265 285 106 59 chr4 173752411 173752667 -10535995 - L1MC/D LINE L1 -2451 3678 3411 21 71 0 0 chr4 173752705 173752747 -10535915 + AT_rich Low_complexity Low_complexity 1 42 0 280 296 84 45 chr4 173752990 173753372 -10535290 - L1MC/D LINE L1 -3114 3015 2619 246 221 26 26 chr4 173753453 173753530 -10535132 - L1MC/D LINE L1 -3800 2329 2253 363 23 0 0 chr4 173753685 173753729 -10534933 + (TG)n Simple_repeat Simple_repeat 2 45 0 286 366 38 4 chr4 173753972 173754207 -10534455 - L1MC/D LINE L1 -4704 1606 1364 567 272 35 26 chr4 173754325 173754553 -10534109 - L1MC/D LINE L1 -4925 1194 965 363 220 17 59 chr4 173754591 173754709 -10533953 - L1ME3A LINE L1 -23 6147 6035 * 519 194 0 1 chr4 173754700 173754802 -10533860 - L1M1 LINE L1 -586 5719 5619 1303 207 0 4 chr4 173754807 173755053 -10533609 - AluJb SINE Alu -16 296 52 1017 264 70 5 chr4 173755056 173755498 -10533164 - L1ME3A LINE L1 -136 6026 5475 5696 173 60 32 chr4 173755508 173755618 -10533044 + Charlie5 DNA MER1_type 1192 1298 -1326 1958 105 11 18 chr4 173755618 173755904 -10532758 + AluSx SINE Alu 1 284 -28 5696 173 60 32 chr4 173755904 173757185 -10531477 + Charlie5 DNA MER1_type 1298 2621 -3 193 393 12 0 chr4 173757736 173757820 -10530842 + L2 LINE L2 3187 3271 -1 25 0 0 0 chr4 173758030 173758055 -10530607 + AT_rich Low_complexity Low_complexity 1 25 0 29 0 0 0 chr4 173758427 173758456 -10530206 + AT_rich Low_complexity Low_complexity 1 29 0 7190 45 0 0 chr4 173758456 173759489 -10529173 - L1PA5 LINE L1 -7 6147 5111 8196 48 2 0 chr4 173759489 173760508 -10528154 + L1PA5 LINE L1 4076 5096 -1050 1799 160 64 14 chr4 173760764 173761121 -10527541 + THE1C LTR MaLR 1 375 0 9863 128 14 27 chr4 173761121 173762722 -10525940 + THE1C-int LTR MaLR 1 1580 0 1964 127 73 17 chr4 173762722 173763076 -10525586 + THE1C LTR MaLR 1 374 -1 294 309 93 36 chr4 173764309 173764448 -10524214 - MIR3 SINE MIR 0 208 62 192 326 0 0 chr4 173766463 173766512 -10522150 + L2 LINE L2 3224 3272 0 27 0 0 0 chr4 173767079 173767106 -10521556 + AT_rich Low_complexity Low_complexity 1 27 0 30 27 0 0 chr4 173767389 173767426 -10521236 + AT_rich Low_complexity Low_complexity 1 37 0 2138 124 0 3 chr4 173768958 173769265 -10519397 - AluSx SINE Alu -5 307 2 377 353 50 32 chr4 173769477 173769698 -10518964 - MIR SINE MIR 0 262 38 333 263 40 0 chr4 173769963 173770039 -10518623 + L2 LINE L2 3234 3312 -1 857 248 27 27 chr4 173770432 173770654 -10518008 + MIR SINE MIR 21 242 -20 181 311 0 0 chr4 173770620 173770665 -10517997 + L2 LINE L2 3254 3298 -15 * 2256 117 0 0 chr4 173770666 173770974 -10517688 - AluSg SINE Alu 0 310 3 21 0 0 0 chr4 173770988 173771009 -10517653 + AT_rich Low_complexity Low_complexity 1 21 0 918 234 49 23 chr4 173771705 173772013 -10516649 + L1ME1 LINE L1 2717 3032 -3114 2208 210 123 16 chr4 173772108 173772655 -10516007 + L1MC1 LINE L1 7 611 -5815 5698 197 30 22 chr4 173772671 173774325 -10514337 + L1MC1 LINE L1 4935 6598 -15 2863 247 63 22 chr4 173774337 173775344 -10513318 + L1ME1 LINE L1 3346 4310 -1836 1796 124 60 23 chr4 173775344 173775643 -10513019 + AluSx SINE Alu 3 312 0 2863 247 63 22 chr4 173775643 173775978 -10512684 + L1ME1 LINE L1 4310 5330 -816 1588 194 7 23 chr4 173775979 173776288 -10512374 + AluJb SINE Alu 1 304 -8 2212 260 34 34 chr4 173776290 173776431 -10512231 + L1ME1 LINE L1 5376 5516 -650 1860 166 3 0 chr4 173776431 173776733 -10511929 - AluJo SINE Alu -9 303 1 2212 260 34 34 chr4 173776733 173777375 -10511287 + L1ME1 LINE L1 5515 6159 -7 1392 243 91 23 chr4 173777813 173778299 -10510363 + L1ME3A LINE L1 5647 6165 -5 21 82 0 0 chr4 173778544 173778593 -10510069 + AT_rich Low_complexity Low_complexity 1 49 0 1114 173 27 18 chr4 173778680 173778900 -10509762 - AluSg/x SINE Alu -7 305 84 21 82 0 0 chr4 173779150 173779199 -10509463 + AT_rich Low_complexity Low_complexity 1 49 0 1716 165 20 13 chr4 173779286 173779589 -10509073 - AluSx SINE Alu -7 305 1 253 216 26 35 chr4 173779719 173779835 -10508827 + T-rich Low_complexity Low_complexity 3 117 0 2077 254 12 9 chr4 173780494 173781151 -10507511 - L1M4 LINE L1 -2640 3506 2848 368 177 0 0 chr4 173781169 173781231 -10507431 - L1MCa LINE L1 -5448 978 917 2780 250 22 36 chr4 173781806 173782508 -10506154 - L1ME1 LINE L1 -5 6230 5541 2084 139 0 0 chr4 173782508 173782809 -10505853 - AluSx SINE Alu -11 301 1 2780 250 22 36 chr4 173782809 173782958 -10505704 - L1ME1 LINE L1 -694 5541 5391 446 263 37 21 chr4 173782944 173783134 -10505528 - L1ME1 LINE L1 -1605 4610 4418 * 791 253 0 55 chr4 173783177 173783430 -10505232 - L1ME1 LINE L1 -1997 4218 3980 841 214 102 10 chr4 173783444 173783747 -10504915 - L1ME1 LINE L1 -4122 2274 1944 686 194 103 27 chr4 173783879 173784005 -10504657 - L1MC2 LINE L1 -1 7764 7649 1972 200 124 78 chr4 173784005 173784795 -10503867 + LTR1B LTR ERV1 1 826 0 686 194 103 27 chr4 173784795 173784895 -10503767 - L1MC2 LINE L1 -116 7649 6136 3281 187 51 39 chr4 173784968 173785734 -10502928 - L1MC3 LINE L1 -924 6861 6087 2846 264 58 9 chr4 173785744 173786628 -10502034 - L1ME1 LINE L1 -5434 962 36 21 36 0 0 chr4 173787899 173787927 -10500735 + AT_rich Low_complexity Low_complexity 1 28 0 2068 123 17 0 chr4 173789518 173789811 -10498851 - AluSg SINE Alu -12 298 1 1109 75 0 0 chr4 173789811 173789944 -10498718 - AluSg SINE Alu -177 133 1 351 205 46 20 chr4 173790091 173790242 -10498420 + (TA)n Simple_repeat Simple_repeat 2 156 0 22 70 0 0 chr4 173790289 173790332 -10498330 + AT_rich Low_complexity Low_complexity 1 43 0 514 299 51 51 chr4 173791445 173791779 -10496883 - MLT1I LTR MaLR -2 407 74 250 323 85 45 chr4 173792235 173792436 -10496226 - MIR SINE MIR 0 262 54 3835 174 40 4 chr4 173793040 173793747 -10494915 - MER44D DNA MER2_type -1 604 1 290 261 54 22 chr4 173796315 173796407 -10492255 + MIR3 SINE MIR 108 202 -6 1039 202 5 5 chr4 173796785 173796993 -10491669 - MER31B LTR ERV1 0 466 259 761 234 11 11 chr4 173797026 173797201 -10491461 - MER31B LTR ERV1 -284 182 8 736 238 36 0 chr4 173797269 173797437 -10491225 - MER45A DNA AcHobo -1 177 4 265 222 50 0 chr4 173797951 173798050 -10490612 + (TA)n Simple_repeat Simple_repeat 1 104 0 1077 211 135 23 chr4 173798304 173798570 -10490092 - AluJb SINE Alu -6 296 1 190 305 14 106 chr4 173798581 173798722 -10489940 + MIR SINE MIR 89 216 -46 587 318 38 0 chr4 173799923 173800134 -10488528 + MIR SINE MIR 34 252 -10 2113 92 17 7 chr4 173800328 173800623 -10488039 - AluSq SINE Alu -13 300 3 514 172 104 25 chr4 173801420 173801583 -10487079 - L1M4 LINE L1 -846 5300 5125 337 322 68 31 chr4 173801593 173801885 -10486777 - L1M4 LINE L1 -941 5205 4903 23 0 0 0 chr4 173803103 173803126 -10485536 + AT_rich Low_complexity Low_complexity 1 23 0 242 372 32 0 chr4 173803231 173803325 -10485337 - MIR SINE MIR -95 113 17 348 211 39 94 chr4 173804467 173804595 -10484067 - L2 LINE L2 0 3313 3193 256 321 122 41 chr4 173804670 173804866 -10483796 - L2 LINE L2 -927 2387 2176 201 222 0 0 chr4 173805260 173805323 -10483339 + A-rich Low_complexity Low_complexity 2 64 0 393 261 11 22 chr4 173806144 173806236 -10482426 - MER119 DNA MER1_type -2 581 491 395 281 10 10 chr4 173806249 173806345 -10482317 - MER119 DNA MER1_type -482 101 6 410 296 30 53 chr4 173806405 173806574 -10482088 + L2 LINE L2 3104 3268 -4 864 274 133 54 chr4 173806917 173807377 -10481285 - MLT1H1 LTR MaLR -16 539 44 272 355 71 14 chr4 173807437 173807578 -10481084 - MIR SINE MIR -100 162 14 252 59 0 0 chr4 173807630 173807664 -10480998 + (CA)n Simple_repeat Simple_repeat 2 35 0 2350 201 47 23 chr4 173807794 173808365 -10480297 - L1MD3 LINE L1 -14 7981 7397 426 252 19 19 chr4 173808376 173808483 -10480179 - MLT1F1 LTR MaLR -458 109 3 254 183 25 0 chr4 173808483 173808548 -10480114 - L1MD3 LINE L1 -578 7277 7164 21 0 0 0 chr4 173809067 173809088 -10479574 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr4 173809230 173809261 -10479401 + AT_rich Low_complexity Low_complexity 1 31 0 297 222 183 32 chr4 173810246 173810372 -10478290 - MIR SINE MIR 0 262 118 22 0 0 0 chr4 173811523 173811545 -10477117 + AT_rich Low_complexity Low_complexity 1 22 0 304 220 220 11 chr4 173811871 173811962 -10476700 - L2 LINE L2 -1 3312 3203 2149 103 0 17 chr4 173812030 173812331 -10476331 + AluSx SINE Alu 1 296 -16 22 56 0 0 chr4 173813539 173813575 -10475087 + AT_rich Low_complexity Low_complexity 1 36 0 2115 98 27 0 chr4 173813722 173814018 -10474644 - AluSc SINE Alu 0 309 6 24 32 0 0 chr4 173814517 173814548 -10474114 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr4 173814919 173814942 -10473720 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr4 173815011 173815043 -10473619 + AT_rich Low_complexity Low_complexity 1 32 0 216 279 15 44 chr4 173815152 173815220 -10473442 - MIR SINE MIR -172 90 25 209 283 121 40 chr4 173820551 173820650 -10468012 + L2 LINE L2 3207 3313 0 1889 99 70 7 chr4 173820802 173821086 -10467576 - AluSc SINE Alu -7 302 1 2077 97 34 7 chr4 173822050 173822348 -10466314 + AluSq SINE Alu 1 306 -7 2076 118 3 0 chr4 173823265 173823562 -10465100 - AluSx SINE Alu -14 298 1 21 36 0 0 chr4 173823835 173823863 -10464799 + AT_rich Low_complexity Low_complexity 1 28 0 2265 106 0 0 chr4 173825421 173825722 -10462940 + AluSx SINE Alu 1 301 -11 690 354 151 14 chr4 173826552 173826720 -10461942 - L2 LINE L2 -420 2894 2750 1358 175 4 0 chr4 173826720 173826988 -10461674 + L1MA4 LINE L1 6030 6298 -2 690 354 151 14 chr4 173826988 173827201 -10461461 - L2 LINE L2 -564 2750 2567 2121 108 0 3 chr4 173827201 173827532 -10461130 + AluSp SINE Alu 1 330 0 690 354 151 14 chr4 173827532 173827699 -10460963 - L2 LINE L2 -747 2567 2269 2242 201 9 2 chr4 173827925 173828368 -10460294 + L1MB5 LINE L1 5719 6164 -10 1032 106 0 0 chr4 173829067 173829199 -10459463 + AluSg SINE Alu 1 132 -178 1049 176 13 34 chr4 173829285 173829523 -10459139 - L1MB7 LINE L1 -9 6175 5943 207 139 0 0 chr4 173829987 173830023 -10458639 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 1973 152 3 0 chr4 173830285 173830581 -10458081 + AluSq SINE Alu 1 297 -16 25 51 0 0 chr4 173830646 173830685 -10457977 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr4 173830737 173830761 -10457901 + AT_rich Low_complexity Low_complexity 1 24 0 193 222 44 0 chr4 173830921 173830966 -10457696 - L2 LINE L2 -6 3307 3261 1346 113 213 4 chr4 173830988 173831228 -10457434 + AluSg1 SINE Alu 1 290 -19 336 355 7 0 chr4 173831323 173831461 -10457201 + MIR SINE MIR 124 262 0 2036 134 13 0 chr4 173832177 173832482 -10456180 - AluSx SINE Alu -3 309 1 1331 280 83 14 chr4 173834869 173835372 -10453290 - MLT1F LTR MaLR -4 538 1 369 364 87 30 chr4 173835678 173836172 -10452490 + L2 LINE L2 2236 2757 -557 183 80 0 0 chr4 173838072 173838097 -10450565 + (TTG)n Simple_repeat Simple_repeat 3 27 0 205 80 20 40 chr4 173840585 173840635 -10448027 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 1872 138 7 3 chr4 173841512 173841795 -10446867 + AluSx SINE Alu 7 290 -22 2056 124 3 0 chr4 173842021 173842312 -10446350 + AluSx SINE Alu 1 292 -20 1234 153 17 46 chr4 173842889 173843127 -10445535 + Tigger1 DNA MER2_type 8 238 -2180 526 98 0 24 chr4 173843127 173843209 -10445453 + MADE1 DNA Mariner 1 80 0 415 245 142 0 chr4 173843209 173843315 -10445347 + Tigger1 DNA MER2_type 237 357 -2061 * 9951 133 44 11 chr4 173843313 173844940 -10443722 + Tigger1 DNA MER2_type 739 2418 0 2243 114 0 0 chr4 173845084 173845383 -10443279 - AluSc SINE Alu -5 304 6 23 33 0 0 chr4 173845876 173845906 -10442756 + AT_rich Low_complexity Low_complexity 1 30 0 290 319 31 61 chr4 173846332 173846495 -10442167 + L2 LINE L2 2570 2727 -587 280 267 89 11 chr4 173846835 173846925 -10441737 + L2 LINE L2 3171 3267 -5 268 286 55 0 chr4 173847679 173847770 -10440892 - MIR SINE MIR -6 256 161 27 87 0 0 chr4 173847822 173847891 -10440771 + AT_rich Low_complexity Low_complexity 1 69 0 1864 263 68 25 chr4 173847911 173849037 -10439625 - L1MEc LINE L1 -3050 3165 2032 29 0 0 25 chr4 173849361 173849381 -10439281 + AT_rich Low_complexity Low_complexity 1 20 -19 693 191 0 8 chr4 173849381 173849512 -10439150 - FLAM_C SINE Alu -2 131 2 29 0 0 25 chr4 173849512 173849531 -10439131 + AT_rich Low_complexity Low_complexity 20 39 0 25 90 0 0 chr4 173850277 173850344 -10438318 + AT_rich Low_complexity Low_complexity 1 67 0 195 371 150 6 chr4 173851243 173851410 -10437252 - L2 LINE L2 -958 2356 2166 21 0 0 0 chr4 173853647 173853668 -10434994 + AT_rich Low_complexity Low_complexity 1 21 0 1332 214 59 56 chr4 173854068 173854140 -10434522 + MSTB LTR MaLR 1 71 -355 2218 117 0 0 chr4 173854140 173854439 -10434223 + AluSq SINE Alu 1 299 -14 1332 214 59 56 chr4 173854439 173854689 -10433973 + MSTB LTR MaLR 71 324 -102 896 120 0 0 chr4 173854885 173855002 -10433660 - AluSp SINE Alu -45 268 152 674 130 0 0 chr4 173855086 173855186 -10433476 + MSTB LTR MaLR 333 432 0 1555 185 0 0 chr4 173855324 173855594 -10433068 - Tigger3(Golem) DNA MER2_type -2742 287 18 1512 195 36 10 chr4 173856064 173856367 -10432295 + AluJo SINE Alu 2 312 0 2210 99 0 7 chr4 173856522 173856814 -10431848 + AluSg SINE Alu 5 294 -16 1991 117 0 0 chr4 173857522 173857786 -10430876 - AluY SINE Alu -47 264 1 234 0 0 0 chr4 173858216 173858242 -10430420 + (TA)n Simple_repeat Simple_repeat 2 27 0 2019 116 3 10 chr4 173858863 173859156 -10429506 - AluSc SINE Alu -18 291 1 181 447 13 0 chr4 173859284 173859360 -10429302 + L2 LINE L2 3143 3219 -53 294 264 53 22 chr4 173859383 173859487 -10429175 + MIR SINE MIR 50 154 -76 205 309 122 43 chr4 173859587 173859726 -10428936 + L3b LINE CR1 1227 1376 -207 837 273 131 40 chr4 173859977 173860112 -10428550 - L2 LINE L2 -160 3153 3032 2234 104 0 3 chr4 173860112 173860410 -10428252 + AluSc SINE Alu 1 297 -12 837 273 131 40 chr4 173860410 173860727 -10427935 - L2 LINE L2 -281 3032 2667 283 298 29 10 chr4 173860787 173860891 -10427771 - L2 LINE L2 -5 3308 3203 2438 49 0 13 chr4 173861603 173861908 -10426754 + AluY SINE Alu 1 301 -10 1663 94 0 5 chr4 173861908 173862130 -10426532 + AluSc SINE Alu 71 293 -16 24 32 0 0 chr4 173862266 173862297 -10426365 + AT_rich Low_complexity Low_complexity 1 31 0 416 184 55 6 chr4 173862413 173862565 -10426097 + (TA)n Simple_repeat Simple_repeat 1 163 -8 258 19 19 75 chr4 173862565 173862618 -10426044 + (TATAA)n Simple_repeat Simple_repeat 5 54 0 416 184 55 6 chr4 173862618 173862628 -10426034 + (TA)n Simple_repeat Simple_repeat 163 171 0 1416 140 15 4 chr4 173862632 173862897 -10425765 - L1MA2 LINE L1 0 6304 6037 417 227 182 0 chr4 173863074 173863184 -10425478 + MER94 DNA DNA 1 130 -4 962 289 53 43 chr4 173863184 173863599 -10425063 - LTR16C LTR ERVL 0 491 73 217 365 74 14 chr4 173863837 173863985 -10424677 - MIR SINE MIR -86 176 20 25 0 0 0 chr4 173864047 173864072 -10424590 + AT_rich Low_complexity Low_complexity 1 25 0 2239 122 0 0 chr4 173864352 173864655 -10424007 - AluSx SINE Alu -9 303 1 1860 155 0 0 chr4 173865379 173865650 -10423012 - AluSx SINE Alu -28 284 14 2439 65 7 19 chr4 173866078 173866388 -10422274 + AluY SINE Alu 1 306 -5 1876 155 3 3 chr4 173866788 173867085 -10421577 + AluJb SINE Alu 6 302 -10 261 265 0 0 chr4 173867138 173867206 -10421456 - MIR SINE MIR 0 262 195 594 316 37 4 chr4 173867328 173867621 -10421041 - L2 LINE L2 -287 3026 2728 2301 151 26 35 chr4 173867742 173867821 -10420841 - L1MA8 LINE L1 -274 6017 5939 2120 113 3 3 chr4 173867821 173868112 -10420550 - AluSx SINE Alu -21 291 1 2301 151 26 35 chr4 173868112 173868457 -10420205 - L1MA8 LINE L1 -352 5939 5597 33 25 0 0 chr4 173868492 173868532 -10420130 + AT_rich Low_complexity Low_complexity 1 40 0 209 56 0 28 chr4 173868924 173868960 -10419702 + (TAAAAA)n Simple_repeat Simple_repeat 1 35 0 1503 181 21 29 chr4 173869331 173869612 -10419050 - AluJb SINE Alu -31 281 3 975 168 135 19 chr4 173869726 173870092 -10418570 - MER84 LTR ERVI 0 507 16 1441 195 11 15 chr4 173870098 173870370 -10418292 - AluJo SINE Alu -40 272 2 23 0 0 0 chr4 173870372 173870395 -10418267 + AT_rich Low_complexity Low_complexity 1 23 0 2413 88 0 0 chr4 173870885 173871182 -10417480 - AluSx SINE Alu -15 297 1 211 28 56 0 chr4 173871209 173871245 -10417417 + (TA)n Simple_repeat Simple_repeat 2 39 0 22 35 0 0 chr4 173871247 173871276 -10417386 + AT_rich Low_complexity Low_complexity 1 29 0 244 35 17 69 chr4 173871306 173871364 -10417298 + (TA)n Simple_repeat Simple_repeat 2 56 0 1874 69 0 4 chr4 173872942 173873173 -10415489 + AluSc SINE Alu 63 292 -17 2070 128 0 0 chr4 173873753 173874041 -10414621 - AluSx SINE Alu -22 290 3 295 274 170 56 chr4 173875072 173875419 -10413243 - L2 LINE L2 -256 3057 2674 682 192 23 96 chr4 173876209 173876298 -10412364 - L2 LINE L2 -2 3311 3217 2056 117 14 0 chr4 173876298 173876589 -10412073 - AluSp SINE Alu -16 297 3 682 192 23 96 chr4 173876589 173876718 -10411944 - L2 LINE L2 -96 3217 3109 314 205 95 50 chr4 173876757 173876901 -10411761 + MLT1F LTR MaLR 1 192 -357 * 444 260 86 95 chr4 173876895 173877152 -10411510 + MLT1F LTR MaLR 302 542 0 252 318 0 0 chr4 173877180 173877243 -10411419 - L2 LINE L2 -288 3025 2963 934 175 6 17 chr4 173877829 173878006 -10410656 + AluJb SINE Alu 138 312 0 381 238 36 36 chr4 173878370 173878563 -10410099 + HAL1 LINE L1 1073 1265 -1242 1985 135 34 0 chr4 173878885 173879182 -10409480 + AluSg SINE Alu 1 307 -3 275 279 180 0 chr4 173879507 173879618 -10409044 + L2 LINE L2 3175 3305 -8 463 254 59 32 chr4 173880118 173880338 -10408324 - HAL1 LINE L1 -1154 1353 1128 1332 186 14 36 chr4 173880454 173880733 -10407929 - MER61B LTR ERV1 -29 396 124 27 49 0 0 chr4 173880803 173880844 -10407818 + AT_rich Low_complexity Low_complexity 1 41 0 339 281 11 0 chr4 173880845 173880934 -10407728 - L1MC4 LINE L1 -1339 6703 6614 301 164 27 55 chr4 173880878 173880951 -10407711 + L1MCa LINE L1 1994 2064 -4362 * 291 270 81 0 chr4 173881013 173881124 -10407538 - HAL1 LINE L1 -1570 937 818 287 330 25 0 chr4 173881661 173881779 -10406883 + L1MEd LINE L1 445 565 -5554 * 588 280 70 39 chr4 173881774 173882263 -10406399 + L1MEd LINE L1 2722 3225 -2904 561 333 40 37 chr4 173882272 173882626 -10406036 + MLT1I LTR MaLR 1 355 -54 2333 96 0 0 chr4 173882627 173882928 -10405734 - AluSg SINE Alu -9 301 1 407 221 19 7 chr4 173882992 173883146 -10405516 + GA-rich Low_complexity Low_complexity 2 157 0 22 35 0 0 chr4 173883229 173883258 -10405404 + AT_rich Low_complexity Low_complexity 1 29 0 242 291 12 0 chr4 173883323 173883409 -10405253 + L1MEd LINE L1 3410 3496 -2633 797 324 61 49 chr4 173883667 173883820 -10404842 + L2 LINE L2 2817 2967 -346 1654 84 0 5 chr4 173883820 173884072 -10404590 + AluSq SINE Alu 72 322 0 797 324 61 49 chr4 173884072 173884408 -10404254 + L2 LINE L2 2967 3313 0 489 275 59 97 chr4 173884609 173884929 -10403733 + L1MEd LINE L1 3994 4301 -1828 431 251 104 35 chr4 173884961 173885135 -10403527 + L1MEd LINE L1 4577 4776 -1353 4154 116 9 5 chr4 173885135 173885767 -10402895 - MER41B LTR ERV1 0 635 1 431 251 104 35 chr4 173885767 173885851 -10402811 + L1MEd LINE L1 4776 4853 -1276 355 254 73 73 chr4 173885956 173886133 -10402529 - HAL1 LINE L1 -2329 178 2 233 158 0 53 chr4 173886196 173886253 -10402409 + CT-rich Low_complexity Low_complexity 2 55 0 25 31 0 0 chr4 173887834 173887866 -10400796 + AT_rich Low_complexity Low_complexity 1 32 0 222 236 18 0 chr4 173888061 173888116 -10400546 + (TG)n Simple_repeat Simple_repeat 1 56 0 2107 114 4 0 chr4 173888967 173889247 -10399415 + AluSx SINE Alu 1 281 -31 390 241 142 19 chr4 173889287 173889449 -10399213 - MIR SINE MIR 0 262 81 402 268 43 87 chr4 173889485 173889686 -10398976 + MER112 DNA MER1_type 1 190 -70 1554 149 0 8 chr4 173889686 173889921 -10398741 + AluSg/x SINE Alu 66 298 -14 402 268 43 87 chr4 173889921 173889973 -10398689 + MER112 DNA MER1_type 190 243 -17 1461 170 4 0 chr4 173889973 173890250 -10398412 + L1MA4 LINE L1 6017 6294 -6 33 25 0 0 chr4 173892193 173892233 -10396429 + AT_rich Low_complexity Low_complexity 1 40 0 1673 132 118 11 chr4 173892275 173892547 -10396115 + AluSx SINE Alu 1 301 -11 1915 130 10 10 chr4 173893575 173893868 -10394794 - AluSq SINE Alu -20 293 1 1653 219 12 0 chr4 173894240 173894583 -10394079 + MER7A DNA MER2_type 1 345 -1 3026 141 15 12 chr4 173894841 173895360 -10393302 - L1MC1 LINE L1 0 6333 5813 2346 84 3 0 chr4 173895376 173895673 -10392989 + AluY SINE Alu 1 298 -13 1551 137 44 10 chr4 173895704 173895997 -10392665 - L1MA8 LINE L1 -6 6285 5983 1459 175 60 0 chr4 173895999 173896284 -10392378 - L1MC1 LINE L1 -512 5821 5520 225 188 0 0 chr4 173896600 173896648 -10392014 + (TA)n Simple_repeat Simple_repeat 2 49 0 2277 99 6 10 chr4 173896738 173897051 -10391611 - AluSx SINE Alu 0 312 1 23 0 0 0 chr4 173897335 173897358 -10391304 + AT_rich Low_complexity Low_complexity 1 23 0 1510 108 0 5 chr4 173897916 173898119 -10390543 - AluSg/x SINE Alu -12 298 97 2127 96 50 0 chr4 173898971 173899251 -10389411 - AluSg SINE Alu -16 294 1 469 230 11 0 chr4 173899527 173899614 -10389048 - L2 LINE L2 -5 3308 3221 1993 139 10 3 chr4 173899990 173900299 -10388363 + AluSx SINE Alu 2 312 0 3292 165 11 23 chr4 173900610 173901251 -10387411 - L1MC1 LINE L1 -4 6329 5697 626 227 162 0 chr4 173901521 173901706 -10386956 + MER20 DNA MER1_type 3 217 -2 204 261 282 70 chr4 173901913 173902055 -10386607 - MER5B DNA MER1_type -5 173 2 23 68 0 0 chr4 173903894 173903938 -10384724 + AT_rich Low_complexity Low_complexity 1 44 0 390 286 32 32 chr4 173904890 173905044 -10383618 - MIR SINE MIR 0 262 109 29 28 0 0 chr4 173907216 173907252 -10381410 + AT_rich Low_complexity Low_complexity 1 36 0 657 266 46 53 chr4 173907918 173908181 -10380481 + MIR SINE MIR 1 261 -1 1030 88 47 83 chr4 173908299 173908491 -10380171 - MSTA LTR MaLR -243 185 1 8929 177 31 6 chr4 173908491 173910101 -10378561 - MSTA-int LTR MaLR 0 1651 1 2716 127 16 14 chr4 173910101 173910528 -10378134 - MSTA LTR MaLR 0 428 1 382 310 57 53 chr4 173910562 173910807 -10377855 + L3 LINE CR1 1237 1482 -95 26 30 0 0 chr4 173910918 173910951 -10377711 + AT_rich Low_complexity Low_complexity 1 33 0 383 137 14 0 chr4 173910975 173911048 -10377614 + (TA)n Simple_repeat Simple_repeat 2 75 0 227 323 81 10 chr4 173911084 173911183 -10377479 - L2 LINE L2 0 3272 3167 380 366 151 11 chr4 173911772 173912130 -10376532 + L1ME LINE L1 5318 5725 -396 2126 188 54 54 chr4 173912134 173912633 -10376029 - MLT1D LTR MaLR -5 500 2 23 0 0 0 chr4 173912800 173912823 -10375839 + AT_rich Low_complexity Low_complexity 1 23 0 1541 209 91 44 chr4 173913443 173913925 -10374737 + MLT1D LTR MaLR 1 505 0 411 368 21 4 chr4 173914121 173914360 -10374302 + L1MB1 LINE L1 2 244 -5897 883 245 70 0 chr4 173914539 173914812 -10373850 + L1MB1 LINE L1 2551 2842 -3368 1530 216 21 8 chr4 173914817 173915205 -10373457 + L1MB1 LINE L1 4439 4831 -1379 1171 172 0 10 chr4 173915256 173915459 -10373203 + AluJo SINE Alu 108 308 -4 225 65 0 0 chr4 173915487 173915518 -10373144 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1157 161 34 0 chr4 173915524 173915729 -10372933 - L1MA4 LINE L1 -22 6278 6067 4730 181 9 24 chr4 173915732 173917142 -10371520 + L1MB1 LINE L1 4835 6232 0 1032 230 129 70 chr4 173917537 173917980 -10370682 - MLT1D LTR MaLR 0 505 37 500 68 27 0 chr4 173917986 173918059 -10370603 - MADE1 DNA Mariner -5 75 1 207 0 0 0 chr4 173918364 173918387 -10370275 + (CA)n Simple_repeat Simple_repeat 1 23 0 542 310 70 50 chr4 173918634 173919115 -10369547 + L1MC4a LINE L1 4160 4666 -1480 2275 57 4 7 chr4 173919115 173919439 -10369223 + AluY SINE Alu 1 323 0 542 310 70 50 chr4 173919439 173919739 -10368923 + L1MC4a LINE L1 4666 4958 -1188 246 253 13 0 chr4 173919747 173919822 -10368840 + (TTTAA)n Simple_repeat Simple_repeat 5 80 0 376 280 80 76 chr4 173919853 173920103 -10368559 + L1MC4a LINE L1 4993 5243 -903 1496 165 138 84 chr4 173920108 173920182 -10368480 - MSTA LTR MaLR 0 428 359 2147 113 3 3 chr4 173920182 173920475 -10368187 + AluSg SINE Alu 1 293 -17 1496 165 138 84 chr4 173920475 173920806 -10367856 - MSTA LTR MaLR -69 359 1 8937 174 21 12 chr4 173920807 173922443 -10366219 - MSTA-int LTR MaLR -1 1650 1 1609 159 28 4 chr4 173922445 173922805 -10365857 - MSTA LTR MaLR -2 426 5 4322 260 64 86 chr4 173922820 173925338 -10363324 + L1MC4a LINE L1 5255 7717 -91 253 223 92 46 chr4 173925351 173925481 -10363181 + L1MC4 LINE L1 7907 8042 0 1359 208 10 23 chr4 173927537 173927840 -10360822 - AluJo SINE Alu -9 303 5 314 317 40 20 chr4 173927866 173927967 -10360695 - L2 LINE L2 -40 3273 3171 1520 161 0 60 chr4 173927971 173928034 -10360628 + AluJb SINE Alu 1 66 -246 2548 110 11 5 chr4 173928034 173928407 -10360255 - THE1C LTR MaLR 0 375 1 1520 161 0 60 chr4 173928407 173928642 -10360020 + AluJb SINE Alu 66 281 -31 198 0 0 0 chr4 173928646 173928668 -10359994 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 224 59 29 0 chr4 173929043 173929077 -10359585 + (TA)n Simple_repeat Simple_repeat 1 35 0 201 122 49 0 chr4 173929289 173929330 -10359332 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 1758 140 18 0 chr4 173929837 173930142 -10358520 + AluSx SINE Alu 1 310 0 29 0 0 0 chr4 173931076 173931105 -10357557 + AT_rich Low_complexity Low_complexity 1 29 0 388 177 204 18 chr4 173931925 173932038 -10356624 + MIR3 SINE MIR 69 202 -6 261 0 0 0 chr4 173932804 173932833 -10355829 + (T)n Simple_repeat Simple_repeat 1 29 0 2448 73 0 3 chr4 173933148 173933449 -10355213 + AluSg SINE Alu 1 300 -10 2012 185 59 37 chr4 173934174 173934629 -10354033 - MLT1C LTR MaLR -2 465 1 1397 155 9 4 chr4 173934729 173934961 -10353701 + MER46A DNA MER2_type 2 234 -2 584 302 60 8 chr4 173935146 173935381 -10353281 - MIR SINE MIR 0 262 16 207 0 0 0 chr4 173935768 173935791 -10352871 + (CA)n Simple_repeat Simple_repeat 2 24 0 2239 196 38 13 chr4 173936584 173937059 -10351603 - L1MC3 LINE L1 0 7785 7299 21 95 0 0 chr4 173938832 173938895 -10349767 + AT_rich Low_complexity Low_complexity 1 63 0 23 33 0 0 chr4 173940046 173940076 -10348586 + AT_rich Low_complexity Low_complexity 1 30 0 736 295 18 45 chr4 173940137 173940398 -10348264 - MIR SINE MIR 0 262 3 1991 140 0 0 chr4 173940838 173941168 -10347494 + AluSx SINE Alu 5 334 0 717 156 42 57 chr4 173941535 173941727 -10346935 - MER53 DNA DNA 0 189 1 309 376 85 5 chr4 173942198 173942387 -10346275 - MIR3 SINE MIR -3 205 2 1699 204 83 40 chr4 173942450 173942930 -10345732 + MLT1D LTR MaLR 5 505 0 302 254 15 0 chr4 173943090 173943157 -10345505 - MLT1D LTR MaLR -437 68 1 376 279 47 8 chr4 173943157 173943286 -10345376 - MLT1D-int LTR MaLR 0 1371 1238 2091 164 102 12 chr4 173944352 173944773 -10343889 - LOR1b LTR ERV1 -2 459 1 471 279 11 86 chr4 173945209 173945489 -10343173 + MLT1D LTR MaLR 64 322 -183 21 0 0 0 chr4 173945532 173945553 -10343109 + AT_rich Low_complexity Low_complexity 1 21 0 2385 85 0 0 chr4 173945656 173945962 -10342700 - AluSx SINE Alu -6 306 1 2133 73 38 7 chr4 173946289 173946576 -10342086 - AluSx SINE Alu -16 296 1 24 67 0 0 chr4 173946667 173946712 -10341950 + AT_rich Low_complexity Low_complexity 1 45 0 24 53 0 0 chr4 173946871 173946909 -10341753 + AT_rich Low_complexity Low_complexity 1 38 0 1022 122 0 0 chr4 173947007 173947155 -10341507 - MER50 LTR ERV1 -23 711 564 968 70 0 0 chr4 173947155 173947283 -10341379 + AluY SINE Alu 178 305 -6 2695 165 103 8 chr4 173947286 173947812 -10340850 - MER50 LTR ERV1 -157 577 2 2848 299 77 16 chr4 173947854 173949045 -10339617 - L2 LINE L2 -252 3020 1748 1906 161 3 0 chr4 173949412 173949710 -10338952 + AluSx SINE Alu 1 299 -13 410 329 19 32 chr4 173949902 173950057 -10338605 - MER5A DNA MER1_type -19 170 18 22 56 0 0 chr4 173952205 173952241 -10336421 + AT_rich Low_complexity Low_complexity 1 36 0 29 47 0 0 chr4 173953167 173953210 -10335452 + AT_rich Low_complexity Low_complexity 1 43 0 547 81 86 2 chr4 173953492 173953924 -10334738 + (TA)n Simple_repeat Simple_repeat 1 468 0 25 0 0 0 chr4 173953955 173953980 -10334682 + AT_rich Low_complexity Low_complexity 1 25 0 479 116 28 33 chr4 173953985 173954166 -10334496 + (TTATA)n Simple_repeat Simple_repeat 1 180 0 437 140 47 0 chr4 173954318 173954468 -10334194 + (TA)n Simple_repeat Simple_repeat 2 158 0 233 95 63 0 chr4 173954541 173954604 -10334058 + (TA)n Simple_repeat Simple_repeat 1 67 0 2000 128 3 0 chr4 173954604 173954892 -10333770 - AluSx SINE Alu -23 289 1 264 262 71 36 chr4 173954972 173955056 -10333606 - L2 LINE L2 0 3313 3227 420 20 0 0 chr4 173955097 173955146 -10333516 + (TA)n Simple_repeat Simple_repeat 2 50 0 28 61 0 0 chr4 173959083 173959132 -10329530 + AT_rich Low_complexity Low_complexity 1 49 0 23 68 0 0 chr4 173959901 173959945 -10328717 + AT_rich Low_complexity Low_complexity 1 44 0 2112 78 42 3 chr4 173961316 173961600 -10327062 + AluSc SINE Alu 1 295 -14 919 269 165 20 chr4 173961866 173962308 -10326354 + L2 LINE L2 742 1247 -2067 822 156 0 8 chr4 173962376 173962504 -10326158 - FLAM_A SINE Alu -10 132 6 626 267 5 63 chr4 173962541 173962732 -10325930 - MER58A DNA MER1_type -39 185 6 1279 304 83 30 chr4 173962745 173963374 -10325288 + L2 LINE L2 1287 1948 -1366 672 299 126 37 chr4 173963387 173963840 -10324822 - L2 LINE L2 -24 3289 2788 1796 277 132 45 chr4 173963844 173964474 -10324188 + L2 LINE L2 1946 2695 -618 2275 101 0 0 chr4 173964474 173964770 -10323892 - AluSc SINE Alu -13 296 1 1796 277 132 45 chr4 173964770 173965193 -10323469 + L2 LINE L2 2695 3080 -233 1228 37 19 0 chr4 173965204 173965365 -10323297 + (TTTC)n Simple_repeat Simple_repeat 1 164 0 1448 130 134 12 chr4 173965370 173965616 -10323046 - AluSx SINE Alu -24 288 13 303 176 261 52 chr4 173965616 173965769 -10322893 + L2 LINE L2 3120 3304 -9 23 0 0 0 chr4 173966718 173966741 -10321921 + AT_rich Low_complexity Low_complexity 1 23 0 314 332 78 41 chr4 173967148 173967392 -10321270 + L2 LINE L2 1699 1951 -1363 393 39 0 0 chr4 173968066 173968117 -10320545 + (CA)n Simple_repeat Simple_repeat 2 52 0 231 318 62 62 chr4 173968201 173968396 -10320266 - MLT1J2 LTR MaLR 0 450 256 304 279 74 16 chr4 173968445 173968584 -10320078 - MLT1J2 LTR MaLR -309 141 1 569 316 43 50 chr4 173968766 173969067 -10319595 + L2 LINE L2 2523 2821 -493 279 379 85 49 chr4 173969105 173969493 -10319169 + L2 LINE L2 2871 3272 0 1611 241 96 91 chr4 173969922 173970927 -10317735 - L1ME3A LINE L1 -1 6449 5437 1987 275 78 39 chr4 173971053 173971621 -10317041 - L1ME3A LINE L1 -1391 5035 4491 186 43 0 0 chr4 173971621 173971644 -10317018 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1987 275 78 39 chr4 173971644 173972286 -10316376 - L1ME3A LINE L1 -1935 4491 3777 418 336 52 24 chr4 173972401 173972612 -10316050 - LTR16B LTR ERVL -141 323 107 950 287 75 25 chr4 173972740 173973488 -10315174 - L1ME3A LINE L1 -2688 3738 2948 279 278 145 15 chr4 173973491 173973861 -10314801 - L1MCa LINE L1 -3812 2614 2236 547 297 88 73 chr4 173973956 173974338 -10314324 - L1MCa LINE L1 -4610 1997 1622 2176 97 0 19 chr4 173974338 173974649 -10314013 - AluSg SINE Alu -5 305 1 547 297 88 73 chr4 173974649 173974845 -10313817 - L1MCa LINE L1 -4985 1622 1198 1710 109 4 23 chr4 173974986 173975252 -10313410 + L1PB1 LINE L1 5885 6145 -6 972 279 39 19 chr4 173975646 173976074 -10312588 + L1ME LINE L1 1786 2204 -4011 3094 114 98 43 chr4 173976074 173976654 -10312008 + LTR9 LTR ERV1 1 612 0 972 279 39 19 chr4 173976654 173976719 -10311943 + L1ME LINE L1 2204 2266 -3949 1841 170 3 6 chr4 173976719 173977031 -10311631 + AluJb SINE Alu 2 312 0 972 279 39 19 chr4 173977031 173977551 -10311111 + L1ME LINE L1 2266 2803 -3412 * 2656 258 78 38 chr4 173977549 173978969 -10309693 + L1ME LINE L1 4143 5596 -635 1352 260 166 25 chr4 174078969 174079446 -10209216 - ERVL LTR ERVL -1183 4581 4038 3024 303 66 25 chr4 174079488 174079756 -10208906 - ERVL LTR ERVL -1814 3950 3694 2502 63 0 0 chr4 174079756 174080059 -10208603 - AluY SINE Alu -8 303 1 3024 303 66 25 chr4 174080059 174081008 -10207654 - ERVL LTR ERVL -2070 3694 2683 1342 291 55 24 chr4 174081055 174081746 -10206916 - ERVL LTR ERVL -3175 2589 1852 430 273 16 96 chr4 174081752 174082001 -10206661 - ERVL LTR ERVL -4292 1362 1134 21 0 0 0 chr4 174083237 174083258 -10205404 + AT_rich Low_complexity Low_complexity 1 21 0 240 35 0 0 chr4 174083326 174083355 -10205307 + (TG)n Simple_repeat Simple_repeat 2 30 0 337 319 25 64 chr4 174084467 174084671 -10203991 + MIR SINE MIR 5 200 -62 387 247 0 12 chr4 174084677 174084758 -10203904 + MER8 DNA MER2_type 20 99 -140 237 259 0 0 chr4 174084767 174084821 -10203841 + MER2 DNA MER2_type 282 335 -10 2076 157 0 0 chr4 174084855 174085167 -10203495 - AluSx SINE Alu 0 312 1 2135 139 3 0 chr4 174085917 174086227 -10202435 - AluSx SINE Alu -1 311 1 464 48 16 0 chr4 174086997 174087060 -10201602 + (TG)n Simple_repeat Simple_repeat 2 65 0 1750 150 3 22 chr4 174087060 174087407 -10201255 - MER4A LTR ERV1 -5 659 261 655 115 0 10 chr4 174087410 174087506 -10201156 - MER4A LTR ERV1 -569 95 1 186 103 0 0 chr4 174087541 174087570 -10201092 + (TG)n Simple_repeat Simple_repeat 2 30 0 1131 215 114 29 chr4 174087578 174087912 -10200750 - MLT2C1 LTR ERVL -42 478 1 6956 207 39 1 chr4 174088942 174090487 -10198175 - L1M2 LINE L1 -1207 4939 3337 1677 187 24 45 chr4 174090486 174091160 -10197502 + L1M2 LINE L1 4955 5614 -698 * 669 224 38 0 chr4 174091157 174091340 -10197322 + L1MA10 LINE L1 3415 3604 -2542 * 3064 193 36 24 chr4 174091356 174091907 -10196755 + L1MA10 LINE L1 5618 6180 -154 216 0 0 0 chr4 174091907 174091931 -10196731 + (TAA)n Simple_repeat Simple_repeat 3 26 0 3064 193 36 24 chr4 174091931 174092080 -10196582 + L1MA10 LINE L1 6180 6326 -8 716 249 58 25 chr4 174092390 174092631 -10196031 - MIR SINE MIR -11 251 3 1130 210 55 27 chr4 174092680 174093105 -10195557 + MLT1D LTR MaLR 27 505 0 913 243 73 0 chr4 174093751 174093969 -10194693 + MIR SINE MIR 29 262 0 809 193 12 0 chr4 174094981 174095152 -10193510 - L1MD1 LINE L1 0 6636 6464 1188 213 96 15 chr4 174095158 174095482 -10193180 - MER47A DNA MER2_type -4 362 13 2952 178 19 52 chr4 174095505 174096184 -10192478 - L1MD1 LINE L1 -159 6477 5821 19226 118 16 5 chr4 174096210 174100028 -10188634 - L1PA8A LINE L1 -2 6444 2581 7393 176 26 34 chr4 174100028 174102073 -10186589 - L1PA8A LINE L1 -4376 2085 3 709 186 11 14 chr4 174102091 174102105 -10186557 - L1MD1 LINE L1 -743 5797 5784 2156 76 0 44 chr4 174102105 174102420 -10186242 - AluSc SINE Alu -8 301 1 709 186 11 14 chr4 174102420 174102629 -10186033 - L1MD1 LINE L1 -756 5784 5616 1424 207 7 35 chr4 174102644 174102934 -10185728 + AluJo SINE Alu 3 284 -18 328 276 23 0 chr4 174102937 174103024 -10185638 - L1MC4 LINE L1 -1340 6702 6614 7198 229 72 79 chr4 174103083 174104188 -10184474 - L1MD1 LINE L1 -933 5607 4495 1862 120 39 29 chr4 174104188 174104497 -10184165 - AluSx SINE Alu 0 312 1 7198 229 72 79 chr4 174104497 174105608 -10183054 - L1MD1 LINE L1 -2045 4495 3377 2504 72 0 3 chr4 174105608 174105915 -10182747 - AluY SINE Alu -5 306 1 7198 229 72 79 chr4 174105915 174106595 -10182067 - L1MD1 LINE L1 -3163 3377 2694 2376 104 0 0 chr4 174106595 174106902 -10181760 - AluSx SINE Alu -5 307 1 7198 229 72 79 chr4 174106902 174107268 -10181394 - L1MD1 LINE L1 -3846 2694 2327 2165 126 0 0 chr4 174107268 174107569 -10181093 - AluSc SINE Alu -8 301 1 7198 229 72 79 chr4 174107569 174107595 -10181067 - L1MD1 LINE L1 -4213 2327 2302 3257 151 23 75 chr4 174107595 174108324 -10180338 - LTR8 LTR ERV1 0 691 1 7198 229 72 79 chr4 174108324 174109133 -10179529 - L1MD1 LINE L1 -4238 2302 1489 1874 161 0 0 chr4 174109133 174109418 -10179244 - AluSx SINE Alu -13 299 15 7198 229 72 79 chr4 174109418 174110592 -10178070 - L1MD1 LINE L1 -5051 1489 331 613 252 0 14 chr4 174110595 174110738 -10177924 - L1MD1 LINE L1 -6379 161 21 201 121 0 0 chr4 174112279 174112312 -10176350 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 2275 80 20 0 chr4 174112572 174112873 -10175789 - AluSc SINE Alu 0 309 3 277 275 88 0 chr4 174113221 174113312 -10175350 + MLT2C1 LTR ERVL 1 99 -298 * 363 221 67 29 chr4 174113262 174113366 -10175296 + MLT1E3 LTR MaLR 71 178 -446 310 247 35 12 chr4 174113540 174113625 -10175037 + MLT2F LTR ERVL 573 659 -4 288 263 113 0 chr4 174115713 174115793 -10172869 - L2 LINE L2 0 3313 3225 22 0 0 0 chr4 174116571 174116593 -10172069 + AT_rich Low_complexity Low_complexity 1 22 0 1588 185 100 12 chr4 174117349 174117690 -10170972 + MLT1B LTR MaLR 1 371 -19 23 68 0 0 chr4 174118239 174118283 -10170379 + AT_rich Low_complexity Low_complexity 1 44 0 361 263 67 31 chr4 174118359 174118583 -10170079 - L1MC4a LINE L1 -162 5959 5728 22 35 0 0 chr4 174118600 174118629 -10170033 + AT_rich Low_complexity Low_complexity 1 29 0 285 351 126 6 chr4 174118719 174118893 -10169769 + MIR SINE MIR 5 199 -63 2440 64 0 7 chr4 174118896 174119192 -10169470 + AluY SINE Alu 1 294 -17 2061 150 0 0 chr4 174119794 174120094 -10168568 - AluSx SINE Alu -12 300 1 231 88 0 0 chr4 174120213 174120247 -10168415 + (CAA)n Simple_repeat Simple_repeat 2 35 0 304 369 9 9 chr4 174122736 174122847 -10165815 - MIR SINE MIR -149 113 3 186 167 0 0 chr4 174122956 174122992 -10165670 + GA-rich Low_complexity Low_complexity 1 36 0 204 40 0 0 chr4 174123006 174123031 -10165631 + (T)n Simple_repeat Simple_repeat 1 25 0 365 353 22 0 chr4 174124011 174124150 -10164512 + MIR3 SINE MIR 53 194 -14 205 291 0 35 chr4 174126232 174126318 -10162344 + T-rich Low_complexity Low_complexity 4 86 0 1954 146 52 22 chr4 174127141 174127505 -10161157 - THE1C LTR MaLR 0 375 1 395 321 60 76 chr4 174127912 174128475 -10160187 + L2 LINE L2 2294 2847 -467 205 341 68 0 chr4 174128591 174128679 -10159983 + MER5A DNA MER1_type 26 119 -70 575 343 153 23 chr4 174128785 174129438 -10159224 + L2 LINE L2 2151 2888 -426 319 223 20 24 chr4 174129566 174129704 -10158958 - L1MCa LINE L1 -1339 6983 1995 8898 115 6 7 chr4 174129854 174131136 -10157526 - HSMAR1 DNA Mariner 0 1287 7 438 216 31 10 chr4 174131178 174131275 -10157387 + L2 LINE L2 3214 3312 -1 23 0 0 0 chr4 174132609 174132632 -10156030 + AT_rich Low_complexity Low_complexity 1 23 0 2108 137 3 0 chr4 174132674 174132980 -10155682 - AluSg SINE Alu -3 307 1 5846 169 41 14 chr4 174133257 174135340 -10153322 - L1PB3 LINE L1 -7 6147 4003 1780 106 0 4 chr4 174136019 174136291 -10152371 - AluSq SINE Alu 0 319 49 647 265 31 52 chr4 174136578 174136902 -10151760 + L1MC4a LINE L1 5952 6268 -1540 277 302 93 16 chr4 174137578 174137707 -10150955 - MIR SINE MIR -70 192 54 263 256 94 78 chr4 174140902 174141195 -10147467 - MLT1J1 LTR MaLR -78 368 67 849 112 0 0 chr4 174141763 174141888 -10146774 - AluSg/x SINE Alu 0 312 188 1989 115 17 3 chr4 174143576 174143864 -10144798 - AluSx SINE Alu -20 292 1 262 292 117 73 chr4 174144153 174144271 -10144391 - L2 LINE L2 -15 3298 3187 1634 192 3 19 chr4 174144271 174144588 -10144074 + AluJo SINE Alu 1 312 0 262 292 117 73 chr4 174144588 174144743 -10143919 - L2 LINE L2 -126 3187 3013 853 242 62 101 chr4 174144753 174145207 -10143455 - LTR8A LTR ERV1 -5 722 287 2241 67 46 0 chr4 174145249 174145531 -10143131 + AluY SINE Alu 1 295 -16 341 274 0 38 chr4 174145542 174145648 -10143014 - LTR8A LTR ERV1 -439 288 187 1952 155 38 56 chr4 174145760 174146205 -10142457 + LTR23 LTR ERV1 1 437 0 461 325 61 14 chr4 174146591 174146871 -10141791 + ERVL LTR ERVL 4743 5035 -729 510 279 12 12 chr4 174146887 174147059 -10141603 - MER69A DNA AcHobo -4 173 2 1888 303 138 6 chr4 174147835 174148740 -10139922 - L2 LINE L2 -341 2973 1949 240 267 40 13 chr4 174150803 174150878 -10137784 + MIR SINE MIR 82 158 -104 358 276 97 40 chr4 174151239 174151586 -10137076 + L1MC4a LINE L1 5541 5778 -384 23 0 0 0 chr4 174151860 174151883 -10136779 + AT_rich Low_complexity Low_complexity 1 23 0 2072 116 0 0 chr4 174152009 174152340 -10136322 - AluSx SINE Alu 0 331 1 187 367 83 0 chr4 174153561 174153670 -10134992 + MIR SINE MIR 46 163 -99 207 250 67 0 chr4 174153699 174153759 -10134903 - MER91C DNA MER1_type -29 111 48 262 356 46 29 chr4 174154175 174154481 -10134181 - HERV16 LTR ERVL -829 4935 4625 1197 325 97 25 chr4 174154805 174155590 -10133072 - HERV16 LTR ERVL -1905 3091 2429 1742 286 38 38 chr4 174155745 174156451 -10132211 - HERV16 LTR ERVL -2649 2347 1642 441 348 60 30 chr4 174156553 174156855 -10131807 - HERV16 LTR ERVL -3588 1408 1098 300 258 34 22 chr4 174156882 174156971 -10131691 - HERV16 LTR ERVL -2228 2768 2679 * 1816 333 65 18 chr4 174156969 174158000 -10130662 - HERV16 LTR ERVL -3908 1088 9 713 340 62 0 chr4 174158027 174158333 -10130329 - LTR16A LTR ERVL -21 429 105 2062 127 3 10 chr4 174158408 174158716 -10129946 - AluSg SINE Alu -4 306 1 721 280 37 0 chr4 174158716 174158895 -10129767 - MIR SINE MIR -39 223 35 26 0 0 0 chr4 174159354 174159380 -10129282 + AT_rich Low_complexity Low_complexity 1 26 0 2202 122 0 0 chr4 174159428 174159732 -10128930 - AluSq SINE Alu -9 304 1 248 217 0 0 chr4 174160179 174160225 -10128437 + MER3 DNA MER1_type 1 46 -163 22 0 0 0 chr4 174160260 174160282 -10128380 + AT_rich Low_complexity Low_complexity 1 22 0 519 221 8 0 chr4 174160515 174160637 -10128025 - MER3 DNA MER1_type 0 209 87 2109 117 0 0 chr4 174160892 174161207 -10127455 + AluSg SINE Alu 1 315 0 2409 201 83 54 chr4 174161697 174162362 -10126300 - MER76 LTR ERV -4 684 1 393 280 57 38 chr4 174162489 174162646 -10126016 - MER5A DNA MER1_type -2 187 28 199 316 25 13 chr4 174162906 174162985 -10125677 - MIR SINE MIR -107 155 76 3807 181 8 17 chr4 174163056 174163773 -10124889 - MER50 LTR ERV1 -23 711 1 24 0 0 0 chr4 174164095 174164119 -10124543 + AT_rich Low_complexity Low_complexity 1 24 0 4907 120 99 8 chr4 174164887 174165715 -10122947 - MER4D LTR ERV1 0 903 1 3331 96 22 8 chr4 174165737 174166226 -10122436 - L1PA13 LINE L1 -5 6158 5663 1394 89 0 6 chr4 174166227 174166406 -10122256 - AluSg/x SINE Alu -16 294 117 561 80 0 45 chr4 174166406 174166494 -10122168 - L1PA13 LINE L1 -494 5669 5586 219 376 40 20 chr4 174167711 174167812 -10120850 + MIR SINE MIR 31 133 -75 201 121 0 0 chr4 174167935 174167968 -10120694 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 22 0 0 0 chr4 174167968 174167990 -10120672 + AT_rich Low_complexity Low_complexity 1 22 0 577 299 57 44 chr4 174168253 174168475 -10120187 - L1MC/D LINE L1 -2150 5658 5428 1787 150 0 41 chr4 174168475 174168793 -10119869 - AluSx SINE Alu 0 306 1 577 299 57 44 chr4 174168793 174168887 -10119775 - L1MC/D LINE L1 -2380 5428 5337 226 314 105 20 chr4 174168982 174169335 -10119327 - L1MC/D LINE L1 -1005 5141 4759 625 237 53 21 chr4 174169556 174169746 -10118916 - L1ME2 LINE L1 -34 6130 5935 1027 260 132 27 chr4 174169756 174170271 -10118391 - L1ME2 LINE L1 -301 5863 5295 2735 10 0 0 chr4 174170286 174170584 -10118078 + AluYa5 SINE Alu 1 298 -13 834 246 54 36 chr4 174170600 174170933 -10117729 - L1ME2 LINE L1 -15 6149 5811 3382 259 93 34 chr4 174171067 174171364 -10117298 - L1ME2 LINE L1 -49 6115 5837 2017 134 0 20 chr4 174171364 174171669 -10116993 - AluSc SINE Alu -10 299 1 3382 259 93 34 chr4 174171669 174173755 -10114907 - L1ME2 LINE L1 -327 5837 3532 298 313 36 36 chr4 174173790 174174068 -10114594 - L1ME2 LINE L1 -2692 3454 3177 1663 158 14 7 chr4 174174470 174174748 -10113914 + AluSx SINE Alu 11 290 -22 183 129 0 0 chr4 174176230 174176261 -10112401 + (T)n Simple_repeat Simple_repeat 1 31 0 2279 91 0 3 chr4 174177281 174177577 -10111085 + AluSg SINE Alu 1 295 -15 2104 106 0 18 chr4 174178403 174178724 -10109938 + AluSp SINE Alu 7 322 0 1100 240 85 4 chr4 174179833 174179943 -10108719 + AluJo SINE Alu 2 102 -258 249 57 0 0 chr4 174179943 174179978 -10108684 + (CA)n Simple_repeat Simple_repeat 2 36 0 1100 240 85 4 chr4 174179978 174180204 -10108458 + AluJo SINE Alu 102 360 0 592 272 154 29 chr4 174182491 174182770 -10105892 - MLT1J2 LTR MaLR -24 426 113 748 172 16 0 chr4 174182817 174182945 -10105717 - FLAM_C SINE Alu -2 131 2 255 61 0 0 chr4 174183263 174183296 -10105366 + (CA)n Simple_repeat Simple_repeat 1 33 0 323 323 45 8 chr4 174183662 174183795 -10104867 - MIR3 SINE MIR -12 196 59 25 31 0 0 chr4 174184604 174184636 -10104026 + AT_rich Low_complexity Low_complexity 1 32 0 2372 58 0 26 chr4 174186052 174186364 -10102298 - AluY SINE Alu 0 311 8 1517 210 42 36 chr4 174186504 174186889 -10101773 - MLT1B LTR MaLR 0 390 4 1901 125 6 45 chr4 174187640 174187952 -10100710 + AluSc SINE Alu 1 300 -9 280 362 26 9 chr4 174187960 174188076 -10100586 - MIR SINE MIR -62 146 29 2107 149 118 3 chr4 174188103 174188485 -10100177 - MSTA LTR MaLR -2 426 1 34 0 0 0 chr4 174188619 174188653 -10100009 + AT_rich Low_complexity Low_complexity 1 34 0 190 296 98 45 chr4 174188658 174188790 -10099872 + L2 LINE L2 2647 2785 -529 195 222 0 0 chr4 174190158 174190203 -10098459 + T-rich Low_complexity Low_complexity 1 45 0 341 295 0 0 chr4 174190424 174190529 -10098133 + (TA)n Simple_repeat Simple_repeat 2 106 0 1355 166 64 64 chr4 174190667 174190993 -10097669 - L1MA6 LINE L1 0 6300 5975 459 123 55 0 chr4 174191692 174191855 -10096807 + (TA)n Simple_repeat Simple_repeat 1 172 0 21 0 0 0 chr4 174192127 174192148 -10096514 + AT_rich Low_complexity Low_complexity 1 21 0 680 275 142 83 chr4 174192663 174193431 -10095231 - HAL1b LINE L1 -3 1345 533 2201 117 0 7 chr4 174193492 174193825 -10094837 + AluSx SINE Alu 1 312 0 234 250 73 21 chr4 174193841 174193937 -10094725 + L1ME LINE L1 5681 5781 -340 294 328 81 40 chr4 174194675 174194873 -10093789 + L3 LINE CR1 1271 1476 -101 3174 34 11 0 chr4 174194921 174195303 -10093359 - L1PA3 LINE L1 0 6155 5770 26 0 0 0 chr4 174195303 174195329 -10093333 + AT_rich Low_complexity Low_complexity 1 26 0 2283 102 0 13 chr4 174195689 174196002 -10092660 + AluSg SINE Alu 1 309 -1 272 303 141 7 chr4 174196290 174196432 -10092230 - MIR SINE MIR -70 192 32 354 290 0 0 chr4 174196433 174196526 -10092136 - MLT1J2 LTR MaLR -11 439 347 3944 129 60 37 chr4 174196623 174197318 -10091344 + MER50 LTR ERV1 1 711 -23 34 42 0 0 chr4 174197945 174197993 -10090669 + AT_rich Low_complexity Low_complexity 1 48 0 14450 138 28 10 chr4 174198767 174201109 -10087553 + Tigger1 DNA MER2_type 1 2388 -30 2095 118 7 0 chr4 174201109 174201398 -10087264 - AluSx SINE Alu -21 291 1 14450 138 28 10 chr4 174201398 174201424 -10087238 + Tigger1 DNA MER2_type 2388 2412 -6 1266 319 212 12 chr4 174202790 174203826 -10084836 + L2 LINE L2 666 1909 -1405 681 124 54 0 chr4 174203826 174203955 -10084707 - L1MA7 LINE L1 -810 5481 5346 * 1596 185 10 0 chr4 174203953 174204245 -10084417 + L1MA7 LINE L1 5486 5780 -511 1343 186 55 12 chr4 174204245 174204498 -10084164 + AluSx SINE Alu 49 312 0 2587 137 42 24 chr4 174204500 174205004 -10083658 + L1MA7 LINE L1 5769 6281 -10 692 289 80 74 chr4 174205012 174205117 -10083545 + L2 LINE L2 1898 2001 -1313 2922 130 43 0 chr4 174205117 174205603 -10083059 - L1MA5A LINE L1 0 6297 5791 692 289 80 74 chr4 174205603 174205971 -10082691 + L2 LINE L2 2001 2374 -940 823 328 85 56 chr4 174206131 174206282 -10082380 + L2 LINE L2 2687 2832 -481 1720 51 51 0 chr4 174206282 174206499 -10082163 - AluY SINE Alu -83 228 1 823 328 85 56 chr4 174206499 174206950 -10081712 + L2 LINE L2 2832 3313 0 289 214 0 29 chr4 174207075 174207145 -10081517 - MIR SINE MIR -5 257 190 472 283 62 13 chr4 174207776 174208002 -10080660 + L1ME LINE L1 5529 5765 -356 317 231 122 96 chr4 174208110 174208266 -10080396 - LTR33 LTR ERVL -2 519 360 1226 240 33 0 chr4 174208397 174208672 -10079990 - L1M4c LINE L1 -6081 303 20 380 334 129 20 chr4 174208672 174208974 -10079688 - L2 LINE L2 -567 2747 2413 1138 288 86 39 chr4 174209501 174210247 -10078415 - L1ME3A LINE L1 -14 6392 5612 331 314 21 26 chr4 174210331 174210522 -10078140 - L1ME3A LINE L1 -2371 4011 3822 627 290 118 39 chr4 174210527 174210917 -10077745 - L1ME3A LINE L1 -2608 3774 3354 341 214 43 0 chr4 174210918 174210988 -10077674 - L1ME3A LINE L1 -6085 299 227 1555 235 37 97 chr4 174210988 174211639 -10077023 + LTR9 LTR ERV1 1 612 0 603 195 8 8 chr4 174211655 174211778 -10076884 + L1PA16 LINE L1 6011 6133 -33 279 0 0 0 chr4 174211780 174211811 -10076851 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 26 0 0 0 chr4 174212398 174212424 -10076238 + AT_rich Low_complexity Low_complexity 1 26 0 490 250 201 7 chr4 174214090 174214234 -10074428 + MER5A DNA MER1_type 18 189 0 498 272 30 47 chr4 174214254 174214423 -10074239 - MER5B DNA MER1_type 0 178 13 293 268 42 0 chr4 174216740 174216811 -10071851 - MIR SINE MIR -61 147 74 26 64 0 0 chr4 174216883 174216930 -10071732 + AT_rich Low_complexity Low_complexity 1 47 0 1342 217 101 72 chr4 174217640 174218123 -10070539 - MLT2B1 LTR ERVL -19 501 5 417 318 66 14 chr4 174218805 174219016 -10069646 + L1M4b LINE L1 12 233 -6626 340 295 186 11 chr4 174219147 174219330 -10069332 + L2 LINE L2 3099 3313 0 36 40 0 0 chr4 174219623 174219673 -10068989 + AT_rich Low_complexity Low_complexity 1 50 0 23 33 0 0 chr4 174219852 174219882 -10068780 + AT_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr4 174219945 174219972 -10068690 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr4 174220016 174220044 -10068618 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr4 174220143 174220175 -10068487 + AT_rich Low_complexity Low_complexity 1 32 0 2245 104 0 22 chr4 174221230 174221547 -10067115 - AluSx SINE Alu -2 310 1 21 0 0 0 chr4 174221743 174221764 -10066898 + AT_rich Low_complexity Low_complexity 1 21 0 1692 216 0 40 chr4 174222381 174222756 -10065906 - MLT1A1 LTR MaLR 0 365 6 26 50 0 0 chr4 174223149 174223189 -10065473 + AT_rich Low_complexity Low_complexity 1 40 0 233 295 39 31 chr4 174223205 174223334 -10065328 - L1M4 LINE L1 -1561 4585 4456 207 205 26 39 chr4 174223627 174223655 -10065007 + (TCTA)n Simple_repeat Simple_repeat 2 29 -49 2032 134 13 0 chr4 174223655 174223953 -10064709 - AluSg SINE Alu -8 302 1 207 205 26 39 chr4 174223953 174224002 -10064660 + (TCTA)n Simple_repeat Simple_repeat 29 78 0 233 336 81 17 chr4 174224117 174224599 -10064063 - L1M4 LINE L1 -2115 4031 3519 590 298 52 19 chr4 174225423 174225770 -10062892 + MLT1H LTR MaLR 5 330 -212 2330 82 9 29 chr4 174227132 174227447 -10061215 + AluY SINE Alu 1 309 -2 262 271 74 41 chr4 174227591 174227713 -10060949 - L2 LINE L2 0 3313 3188 929 310 211 17 chr4 174228327 174229159 -10059503 + L2 LINE L2 2291 3298 -15 1907 136 31 45 chr4 174229159 174229398 -10059264 + MER7A DNA MER2_type 1 233 -2805 2184 132 0 0 chr4 174229398 174229709 -10058953 + AluSx SINE Alu 1 311 -1 1907 136 31 45 chr4 174229709 174229822 -10058840 + MER7A DNA MER2_type 233 346 0 929 310 211 17 chr4 174229822 174229842 -10058820 + L2 LINE L2 3298 3313 0 216 0 0 0 chr4 174230124 174230148 -10058514 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 342 0 0 0 chr4 174230147 174230185 -10058477 + (GA)n Simple_repeat Simple_repeat 2 39 0 321 26 0 0 chr4 174230205 174230243 -10058419 + (CA)n Simple_repeat Simple_repeat 2 39 0 214 229 168 38 chr4 174230448 174230579 -10058083 + MER5C DNA MER1_type 177 324 0 25 31 0 0 chr4 174230763 174230795 -10057867 + AT_rich Low_complexity Low_complexity 1 32 0 194 241 17 35 chr4 174230895 174230953 -10057709 + L2 LINE L2 3204 3260 -12 203 303 22 34 chr4 174231115 174231176 -10057486 + L2 LINE L2 3225 3286 -27 5670 9 3 0 chr4 174231176 174231816 -10056846 - L1PA2 LINE L1 0 6155 5514 203 303 22 34 chr4 174231816 174231843 -10056819 + L2 LINE L2 3286 3312 -1 1516 257 12 3 chr4 174231976 174232315 -10056347 + MER77 LTR ERV1 264 605 0 21 0 0 0 chr4 174232330 174232351 -10056311 + AT_rich Low_complexity Low_complexity 1 21 0 274 336 0 0 chr4 174232425 174232529 -10056133 - L1 LINE L1 -1978 4168 4065 1334 199 78 14 chr4 174233402 174233684 -10054978 + AluJb SINE Alu 1 300 -12 1832 142 10 26 chr4 174233794 174234104 -10054558 - LTR1 LTR ERV1 0 785 481 7262 187 37 30 chr4 174234105 174236144 -10052518 - HUERS-P2 LTR ERV1 -1273 1815 390 448 267 37 80 chr4 174236263 174236450 -10052212 + MER8 DNA MER2_type 1 179 -60 368 206 0 0 chr4 174236425 174236488 -10052174 + MER2 DNA MER2_type 282 344 -1 * 731 154 37 37 chr4 174236569 174236705 -10051957 + AluJo SINE Alu 1 136 -176 306 200 33 0 chr4 174236717 174236777 -10051885 + MIR SINE MIR 20 81 -181 2150 118 142 6 chr4 174236932 174237298 -10051364 + MSTA LTR MaLR 1 416 -12 262 88 100 125 chr4 174237262 174237342 -10051320 + LTR66 LTR ERVL 363 440 -170 * 303 196 0 0 chr4 174237344 174237400 -10051262 - L1MC4 LINE L1 -1339 6703 6648 187 273 0 0 chr4 174238025 174238069 -10050593 - L3 LINE CR1 -2 1575 1532 1206 120 15 55 chr4 174238532 174238732 -10049930 + AluJb SINE Alu 3 194 -118 204 214 0 0 chr4 174238873 174238915 -10049747 + GA-rich Low_complexity Low_complexity 1 42 0 400 265 49 0 chr4 174239345 174239447 -10049215 - MIR SINE MIR -70 192 86 513 287 99 5 chr4 174239707 174239909 -10048753 - MIR SINE MIR -28 234 14 1376 183 151 11 chr4 174240066 174240345 -10048317 - HUERS-P2 LTR ERV1 -2567 521 204 4252 152 26 31 chr4 174240489 174241267 -10047395 - LTR1 LTR ERV1 0 785 12 38 51 0 0 chr4 174241720 174241779 -10046883 + AT_rich Low_complexity Low_complexity 1 59 0 26 30 0 0 chr4 174241931 174241964 -10046698 + AT_rich Low_complexity Low_complexity 1 33 0 323 200 0 12 chr4 174242399 174242484 -10046178 + CT-rich Low_complexity Low_complexity 2 85 0 1884 148 0 109 chr4 174242773 174243150 -10045512 + MER1B DNA MER1_type 1 336 -1 2593 102 11 8 chr4 174243240 174243614 -10045048 + THE1C LTR MaLR 1 375 0 592 306 119 30 chr4 174244213 174244582 -10044080 + L2 LINE L2 1992 2393 -921 252 398 10 0 chr4 174245250 174245348 -10043314 - MIR SINE MIR -68 140 42 624 371 44 43 chr4 174245563 174246239 -10042423 + L2 LINE L2 685 1361 -1953 343 140 0 0 chr4 174246866 174246916 -10041746 + MSTA LTR MaLR 3 52 -376 1823 154 49 38 chr4 174246922 174247292 -10041370 - THE1C LTR MaLR 0 375 2 1595 165 121 57 chr4 174247300 174247342 -10041320 + MSTA LTR MaLR 15 53 -375 1689 151 59 48 chr4 174247342 174247416 -10041246 - THE1C LTR MaLR 0 375 303 2051 116 21 0 chr4 174247416 174247542 -10041120 + AluSq SINE Alu 1 123 -190 189 0 0 0 chr4 174247542 174247563 -10041099 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 2051 116 21 0 chr4 174247563 174247720 -10040942 + AluSq SINE Alu 123 290 -23 1689 151 59 48 chr4 174247720 174248016 -10040646 - THE1C LTR MaLR -72 303 1 1595 165 121 57 chr4 174248016 174248360 -10040302 + MSTA LTR MaLR 53 426 -2 220 282 0 0 chr4 174248379 174248450 -10040212 + A-rich Low_complexity Low_complexity 1 71 0 215 222 0 0 chr4 174248563 174248608 -10040054 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 425 294 77 121 chr4 174249435 174249588 -10039074 - L2 LINE L2 0 3313 3155 195 100 0 0 chr4 174249588 174249618 -10039044 + (CATATA)n Simple_repeat Simple_repeat 2 31 0 425 294 77 121 chr4 174249618 174249995 -10038667 - L2 LINE L2 -158 3155 2806 259 326 0 31 chr4 174250047 174250145 -10038517 - MIR SINE MIR -164 98 4 25 0 0 0 chr4 174251200 174251225 -10037437 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr4 174253585 174253611 -10035051 + AT_rich Low_complexity Low_complexity 1 26 0 313 370 67 24 chr4 174253660 174253914 -10034748 + HAL1b LINE L1 434 698 -650 3741 133 49 14 chr4 174254018 174254677 -10033985 - Tigger3(Golem) DNA MER2_type 0 3029 2348 717 201 14 0 chr4 174254679 174254818 -10033844 - Tigger3(Golem) DNA MER2_type -2823 206 66 1845 155 26 63 chr4 174254822 174255027 -10033635 - MER1B DNA MER1_type -2373 339 128 2241 100 3 7 chr4 174255027 174255328 -10033334 + AluSx SINE Alu 1 300 -12 2374 71 3 0 chr4 174255330 174255625 -10033037 + AluY SINE Alu 3 298 -13 1845 155 26 63 chr4 174255625 174255765 -10032897 - MER1B DNA MER1_type -2585 127 4 247 197 82 16 chr4 174255767 174255828 -10032834 - Tigger3(Golem) DNA MER2_type -2961 68 4 294 287 26 0 chr4 174256056 174256171 -10032491 + (TA)n Simple_repeat Simple_repeat 2 119 0 546 158 139 0 chr4 174257409 174257510 -10031152 + FRAM SINE Alu 13 127 -49 3016 98 42 0 chr4 174257518 174257945 -10030717 - MLT2A2 LTR ERVL -8 445 1 1860 138 26 60 chr4 174259823 174260172 -10028490 - MER1B DNA MER1_type 0 337 1 26 0 0 0 chr4 174260406 174260432 -10028230 + AT_rich Low_complexity Low_complexity 1 26 0 578 321 57 14 chr4 174261625 174261834 -10026828 - MIR SINE MIR -10 252 35 486 297 78 65 chr4 174261864 174262261 -10026401 + MLT1J LTR MaLR 72 473 -38 204 222 0 0 chr4 174262262 174262316 -10026346 + (TA)n Simple_repeat Simple_repeat 2 55 0 2537 239 57 16 chr4 174262331 174263137 -10025525 - Charlie1 DNA MER1_type -359 2402 1564 1167 254 66 62 chr4 174263549 174264048 -10024614 + MLT2B1 LTR ERVL 1 501 -19 235 316 53 41 chr4 174264842 174265013 -10023649 - L1ME LINE L1 -490 5680 5508 221 132 38 38 chr4 174265384 174265437 -10023225 + T-rich Low_complexity Low_complexity 3 55 0 418 242 156 38 chr4 174265479 174265690 -10022972 - L1ME LINE L1 -414 5748 5513 23 0 0 0 chr4 174265761 174265784 -10022878 + AT_rich Low_complexity Low_complexity 1 23 0 386 336 80 31 chr4 174265828 174266376 -10022286 - L1ME LINE L1 -1909 4237 3663 1445 171 23 4 chr4 174266969 174267227 -10021435 + AluSq SINE Alu 1 263 -50 486 324 65 19 chr4 174267234 174267450 -10021212 + MIR SINE MIR 29 254 -8 255 204 0 0 chr4 174268442 174268496 -10020166 + (TATG)n Simple_repeat Simple_repeat 3 56 0 24 0 0 0 chr4 174268538 174268562 -10020100 + AT_rich Low_complexity Low_complexity 1 24 0 274 257 54 0 chr4 174269823 174269897 -10018765 - L2 LINE L2 0 3313 3236 830 188 89 14 chr4 174270654 174270867 -10017795 + L1MA9 LINE L1 6083 6311 -1 22 80 0 0 chr4 174270940 174270990 -10017672 + AT_rich Low_complexity Low_complexity 1 50 0 28 29 0 0 chr4 174271326 174271361 -10017301 + AT_rich Low_complexity Low_complexity 1 35 0 1302 136 0 15 chr4 174272313 174272512 -10016150 + AluSg/x SINE Alu 99 294 -18 7368 211 35 19 chr4 174272526 174275081 -10013581 + L1MA9 LINE L1 3681 6274 -38 213 366 18 18 chr4 174275505 174275617 -10013045 + L2 LINE L2 3186 3297 -16 26 82 0 0 chr4 174275732 174275793 -10012869 + AT_rich Low_complexity Low_complexity 1 61 0 23 0 0 0 chr4 174275913 174275936 -10012726 + AT_rich Low_complexity Low_complexity 1 23 0 2118 194 57 34 chr4 174276304 174276798 -10011864 + LTR22 LTR ERVK 1 505 -4 3048 228 8 2 chr4 174276901 174277503 -10011159 - HUERS-P3 LTR ERV1 -5799 3120 2515 * 4133 280 28 38 chr4 174277500 174277713 -10010949 - HUERS-P3 LTR ERV1 -5496 1500 1286 2691 143 24 30 chr4 174277713 174278208 -10010454 + LTR22B LTR ERVK 1 492 0 4133 280 28 38 chr4 174278208 174279477 -10009185 - HUERS-P3 LTR ERV1 -5710 1286 34 789 192 58 11 chr4 174279497 174279713 -10008949 - MER61D LTR ERV1 0 750 269 232 336 88 22 chr4 174280333 174280470 -10008192 - MIR SINE MIR -86 176 31 1320 228 99 60 chr4 174280572 174281058 -10007604 - MLT1D LTR MaLR 0 505 1 204 311 33 0 chr4 174282175 174282236 -10006426 - L2 LINE L2 -61 3211 3149 244 343 39 0 chr4 174283390 174283492 -10005170 + MIR3 SINE MIR 58 163 -45 233 208 13 0 chr4 174283657 174283734 -10004928 + (TA)n Simple_repeat Simple_repeat 1 78 0 886 243 40 4 chr4 174284201 174284427 -10004235 + MER34 LTR ERV1 1 234 -308 6166 56 0 1 chr4 174284427 174285236 -10003426 - L1PA2 LINE L1 -2225 3921 3114 12277 30 0 1 chr4 174285240 174287475 -10001187 + L1PA2 LINE L1 3919 6151 -4 946 223 32 28 chr4 174287550 174287832 -10000830 + MER34 LTR ERV1 256 538 -4 2062 174 36 55 chr4 174287974 174288366 -10000296 + MER66B LTR ERV1 1 384 -102 2176 97 7 3 chr4 174288366 174288656 -10000006 + AluSx SINE Alu 1 291 -21 2062 174 36 55 chr4 174288656 174288756 -9999906 + MER66B LTR ERV1 384 484 -2 1378 164 27 31 chr4 174288798 174289090 -9999572 + AluJo SINE Alu 1 291 -21 21 0 0 0 chr4 174289239 174289260 -9999402 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 174289452 174289482 -9999180 + AT_rich Low_complexity Low_complexity 1 30 0 242 353 76 42 chr4 174290377 174290496 -9998166 - L2 LINE L2 -16 3256 3134 2284 153 15 8 chr4 174290627 174291027 -9997635 - MER57A LTR ERV1 0 403 1 285 310 138 9 chr4 174291271 174291387 -9997275 - L2 LINE L2 -1 3271 3141 620 301 81 62 chr4 174291548 174292093 -9996569 + MER34B LTR ERV1 1 555 -10 2109 119 3 3 chr4 174292330 174292623 -9996039 + AluSx SINE Alu 3 295 -17 813 104 0 0 chr4 174292840 174292946 -9995716 + AluY SINE Alu 184 289 -22 1534 188 24 3 chr4 174293097 174293384 -9995278 + AluJb SINE Alu 1 293 -19 26 0 0 0 chr4 174294130 174294156 -9994506 + AT_rich Low_complexity Low_complexity 1 26 0 840 257 117 38 chr4 174294693 174295145 -9993517 + L1ME LINE L1 4864 5351 -795 573 224 9 0 chr4 174295162 174295269 -9993393 + MER2 DNA MER2_type 7 114 -231 1282 135 4 69 chr4 174295825 174295998 -9992664 + MER2 DNA MER2_type 117 271 -74 2415 61 0 6 chr4 174295998 174296310 -9992352 - AluY SINE Alu -1 310 1 1282 135 4 69 chr4 174296310 174296381 -9992281 + MER2 DNA MER2_type 271 345 0 978 248 56 70 chr4 174296388 174296619 -9992043 - MER76 LTR ERV -30 658 425 2178 116 3 0 chr4 174296619 174296922 -9991740 - AluSx SINE Alu -8 304 1 978 248 56 70 chr4 174296922 174297283 -9991379 - MER76 LTR ERV -263 425 12 799 281 39 34 chr4 174297293 174297678 -9990984 + L1ME LINE L1 5359 5745 -421 4174 237 34 12 chr4 174298040 174298672 -9989990 + MER45B DNA AcHobo 4 668 -913 2729 163 29 8 chr4 174298672 174299157 -9989505 - LOR1a LTR ERV1 -2 495 1 4174 237 34 12 chr4 174299157 174299539 -9989123 + MER45B DNA AcHobo 668 1040 0 2024 145 52 0 chr4 174300926 174301271 -9987391 + MER47A DNA MER2_type 4 366 0 3244 174 23 68 chr4 174302211 174302980 -9985682 - L1MB1 LINE L1 -50 6139 5405 2147 244 56 6 chr4 174302985 174303678 -9984984 + L1 LINE L1 2473 3200 -2946 1522 171 3 35 chr4 174303694 174303981 -9984681 - AluJo SINE Alu -11 301 24 767 240 35 0 chr4 174303984 174304155 -9984507 + L1 LINE L1 3704 3880 -2266 691 193 130 0 chr4 174304163 174304324 -9984338 + L1 LINE L1 4090 4271 -1875 1430 252 108 15 chr4 174305382 174305855 -9982807 - MLT2B1 LTR ERVL 0 520 4 225 235 59 24 chr4 174305944 174306029 -9982633 - L1MC/D LINE L1 -2142 5666 5579 1504 197 17 17 chr4 174306838 174307127 -9981535 - AluJo SINE Alu -23 289 1 43 35 0 0 chr4 174307249 174307306 -9981356 + AT_rich Low_complexity Low_complexity 1 57 0 881 272 9 25 chr4 174307348 174307672 -9980990 + L1 LINE L1 2653 2971 -3175 * 5136 150 13 18 chr4 174307669 174307731 -9980931 + L1PA16 LINE L1 4334 4395 -1771 306 0 0 0 chr4 174307731 174307765 -9980897 + (CA)n Simple_repeat Simple_repeat 1 34 0 5136 150 13 18 chr4 174307765 174309515 -9979147 + L1PA16 LINE L1 4395 6157 -9 17604 143 15 42 chr4 174310673 174313949 -9974713 + L1P LINE L1 1963 5149 -997 6240 86 25 3 chr4 174313951 174315096 -9973566 + L1PA10 LINE L1 5001 6163 -5 1111 182 58 16 chr4 174315100 174315342 -9973320 + LTR43 LTR ERV1 210 461 -141 185 343 0 0 chr4 174315446 174315519 -9973143 + MIR SINE MIR 172 244 -18 30 27 0 0 chr4 174315606 174315643 -9973019 + AT_rich Low_complexity Low_complexity 1 37 0 1902 167 0 0 chr4 174315814 174316120 -9972542 + AluSx SINE Alu 7 312 0 1212 201 91 74 chr4 174316700 174317094 -9971568 + MER57A LTR ERV1 1 401 -2 21 0 0 0 chr4 174318498 174318519 -9970143 + AT_rich Low_complexity Low_complexity 1 21 0 300 282 27 27 chr4 174318904 174319014 -9969648 + MLT1F1 LTR MaLR 14 123 -444 184 167 0 0 chr4 174319325 174319355 -9969307 - L2 LINE L2 -10 3303 3274 1781 161 66 17 chr4 174320245 174320593 -9968069 - L1MA7 LINE L1 -21 6270 5906 3320 170 25 21 chr4 174320603 174320707 -9967955 + L1MA8 LINE L1 5254 5356 -935 1996 110 43 0 chr4 174320707 174320989 -9967673 + AluSp SINE Alu 1 294 -19 3320 170 25 21 chr4 174320989 174321536 -9967126 + L1MA8 LINE L1 5356 5907 -384 207 0 0 0 chr4 174323481 174323504 -9965158 + (CA)n Simple_repeat Simple_repeat 2 24 0 572 306 0 6 chr4 174323505 174323662 -9965000 - MLT1I LTR MaLR -224 185 30 12461 170 32 22 chr4 174325534 174326439 -9962223 - Tigger7 DNA MER2_type -1 2486 1591 2265 71 0 0 chr4 174326439 174326757 -9961905 - AluSg SINE Alu 0 318 1 12461 170 32 22 chr4 174326757 174328312 -9960350 - Tigger7 DNA MER2_type -896 1591 1 234 200 29 14 chr4 174328520 174328590 -9960072 - L1MC4 LINE L1 -1347 6695 6625 981 152 31 40 chr4 174328590 174328814 -9959848 + Tigger2 DNA MER2_type 1 222 -2496 * 12132 149 81 19 chr4 174328809 174331016 -9957646 + Tigger2 DNA MER2_type 376 2718 0 313 250 0 31 chr4 174331016 174331112 -9957550 + (TATATG)n Simple_repeat Simple_repeat 6 98 0 244 233 120 47 chr4 174331112 174331262 -9957400 + L1ME4a LINE L1 5938 6098 -23 280 248 37 9 chr4 174331326 174331435 -9957227 - MER104 DNA Tc2 -63 117 6 26 98 0 0 chr4 174331665 174331747 -9956915 + AT_rich Low_complexity Low_complexity 1 82 0 267 309 115 75 chr4 174331769 174332371 -9956291 + L1MB8 LINE L1 16 641 -5901 2284 232 62 25 chr4 174332508 174333445 -9955217 + L1MB8 LINE L1 879 1845 -4801 337 188 14 0 chr4 174333463 174333532 -9955130 + MER49 LTR ERV1 4 73 -850 * 3219 171 16 43 chr4 174333527 174333763 -9954899 + MER4D LTR ERV1 186 427 -476 2032 197 49 7 chr4 174333763 174334174 -9954488 - MSTA LTR MaLR 0 428 1 3219 171 16 43 chr4 174334174 174334605 -9954057 + MER4D LTR ERV1 427 835 -68 556 201 93 0 chr4 174334615 174334754 -9953908 - L1M4c LINE L1 -4874 1510 1359 338 114 43 43 chr4 174334764 174334834 -9953828 + MER4D LTR ERV1 834 903 0 756 256 127 57 chr4 174334834 174335541 -9953121 + L1MB8 LINE L1 2000 2756 -4069 * 1263 215 4 109 chr4 174335539 174335882 -9952780 + L1MB8 LINE L1 3240 3509 -3135 2108 105 3 10 chr4 174335882 174336176 -9952486 - AluSq SINE Alu -21 292 1 1263 215 4 109 chr4 174336176 174336363 -9952299 + L1MB8 LINE L1 3509 3714 -2930 2804 229 80 66 chr4 174336389 174337179 -9951483 + MER21B LTR ERV1 14 814 -49 658 295 74 26 chr4 174337204 174337516 -9951146 + L1MB8 LINE L1 3713 4039 -2605 3499 253 102 19 chr4 174337528 174338774 -9949888 + L1MB8 LINE L1 4273 5415 -1229 255 31 0 0 chr4 174338774 174338806 -9949856 + (CA)n Simple_repeat Simple_repeat 2 33 0 3499 253 102 19 chr4 174338806 174338973 -9949689 + L1MB8 LINE L1 5415 5567 -1077 2266 104 0 0 chr4 174338973 174339270 -9949392 - AluSg1 SINE Alu -12 297 1 3499 253 102 19 chr4 174339270 174339292 -9949370 + L1MB8 LINE L1 5567 5827 -817 841 205 87 38 chr4 174339292 174339597 -9949065 + MLT1A1 LTR MaLR 1 331 -34 683 276 0 11 chr4 174339638 174339819 -9948843 - MER8 DNA MER2_type -60 179 1 729 214 114 75 chr4 174339893 174340201 -9948461 - LTR52 LTR ERVL -98 323 4 1919 282 54 22 chr4 174340203 174340756 -9947906 - LTR52-int LTR ERVL 0 3556 2986 454 214 92 0 chr4 174340771 174340869 -9947793 + LTR52-int LTR ERVL 2277 2383 -1173 786 254 109 5 chr4 174340870 174341071 -9947591 - LTR52-int LTR ERVL -2892 2793 2572 980 234 127 4 chr4 174341102 174341346 -9947316 - LTR52-int LTR ERVL -1035 2521 2248 752 257 10 2 chr4 174341455 174341683 -9946979 - LTR52-int LTR ERVL -1478 2096 1849 * 920 213 50 5 chr4 174341673 174341875 -9946787 - LTR52-int LTR ERVL -3793 1892 1682 617 195 0 0 chr4 174341878 174342001 -9946661 + FLAM_A SINE Alu 20 142 0 1716 237 106 59 chr4 174342091 174342788 -9945874 - LTR52-int LTR ERVL -2002 1554 825 1451 212 83 18 chr4 174342867 174343253 -9945409 - LTR52 LTR ERVL -2 419 9 2706 140 21 23 chr4 174343254 174343864 -9944798 - MER4E LTR ERV1 -1 765 1 3140 220 31 27 chr4 174343876 174344160 -9944502 + L1MB8 LINE L1 5841 6122 -554 2050 118 21 56 chr4 174344160 174344533 -9944129 - THE1B LTR MaLR -1 363 4 3140 220 31 27 chr4 174344533 174345074 -9943588 + L1MB8 LINE L1 6122 6670 -6 323 283 131 21 chr4 174346032 174346223 -9942439 - MIR SINE MIR -1 261 50 321 311 94 33 chr4 174347867 174348198 -9940464 + L1MC4a LINE L1 2023 2373 -4023 925 314 71 14 chr4 174348242 174348932 -9939730 + L1MC4a LINE L1 2389 3117 -3098 2122 104 28 0 chr4 174348957 174349244 -9939418 + AluY SINE Alu 1 295 -16 7061 215 37 11 chr4 174349259 174351771 -9936891 + L1MA9 LINE L1 3682 6279 -12 223 341 62 28 chr4 174352065 174352244 -9936418 + L2 LINE L2 3113 3297 -16 1296 200 4 4 chr4 174353008 174353248 -9935414 - HUERS-P3 LTR ERV1 -5799 3120 2881 305 111 37 0 chr4 174353249 174353303 -9935359 + Alu SINE Alu 240 295 -7 230 273 65 54 chr4 174353305 174353583 -9935079 + L1MC4a LINE L1 3146 3426 -2789 22 0 0 0 chr4 174353739 174353761 -9934901 + AT_rich Low_complexity Low_complexity 1 22 0 2495 145 124 0 chr4 174354336 174354804 -9933858 + MER1A DNA MER1_type 2 527 0 358 290 43 16 chr4 174355279 174355428 -9933234 + L1MC4a LINE L1 5575 5720 -470 22 35 0 0 chr4 174355437 174355466 -9933196 + AT_rich Low_complexity Low_complexity 1 29 0 318 288 38 68 chr4 174355471 174355603 -9933059 + L1MC4a LINE L1 5822 5949 -1928 256 283 88 39 chr4 174355874 174356079 -9932583 + HAL1b LINE L1 163 377 -971 546 244 75 49 chr4 174357572 174357742 -9930920 - L1MCa LINE L1 -4505 2143 1979 1754 119 40 40 chr4 174357742 174358044 -9930618 - AluSq SINE Alu -11 302 1 546 244 75 49 chr4 174358044 174358312 -9930350 - L1MCa LINE L1 -4669 1979 1642 530 330 6 33 chr4 174358419 174358742 -9929920 - L1MCa LINE L1 -5666 379 77 1260 218 16 22 chr4 174359789 174360101 -9928561 - AluJo SINE Alu 0 312 3 2261 119 0 0 chr4 174360486 174360797 -9927865 + AluSx SINE Alu 1 311 -1 199 340 97 11 chr4 174362470 174362655 -9926007 + MIR SINE MIR 56 256 -6 2452 66 0 19 chr4 174364331 174364648 -9924014 + AluY SINE Alu 1 311 0 910 204 156 51 chr4 174365948 174366282 -9922380 + MER93b LTR ERV1 5 373 0 427 331 63 54 chr4 174366518 174366947 -9921715 + HERVL LTR ERVL 1448 1880 -3774 929 353 23 31 chr4 174366996 174367512 -9921150 + HERVL LTR ERVL 2001 2512 -3252 3950 159 38 7 chr4 174367513 174368247 -9920415 + Tigger2 DNA MER2_type 1 757 -1961 11580 242 34 22 chr4 174368357 174372864 -9915798 - L1PA16 LINE L1 -257 6625 1986 2793 171 19 4 chr4 174372870 174373349 -9915313 - LOR1a LTR ERV1 -4 493 8 546 129 47 0 chr4 174373359 174373444 -9915218 - LOR1a-int LTR ERV1 -2 8118 8030 * 11888 143 22 24 chr4 174373443 174374145 -9914517 - LOR1-int LTR ERV1 -2056 6064 5362 369 0 0 0 chr4 174374145 174374186 -9914476 + (CA)n Simple_repeat Simple_repeat 2 42 0 11888 143 22 24 chr4 174374186 174375630 -9913032 - LOR1-int LTR ERV1 -2758 5362 3922 9687 208 129 16 chr4 174375631 174378972 -9909690 - L1PA16 LINE L1 -1 6868 3059 2099 86 0 25 chr4 174378972 174379252 -9909410 - AluY SINE Alu -38 273 1 9687 208 129 16 chr4 174379252 174379625 -9909037 - L1PA16 LINE L1 -3810 3059 2729 8156 216 50 10 chr4 174379612 174381738 -9906924 - L1M4 LINE L1 -1793 5055 2844 * 1689 157 44 0 chr4 174381757 174382050 -9906612 - L1PA15 LINE L1 -6 6159 5854 7022 199 29 29 chr4 174382050 174383763 -9904899 - L1M4 LINE L1 -3970 2879 1167 1974 281 50 21 chr4 174383761 174384222 -9904440 - L1M4 LINE L1 -5816 930 441 * 261 0 0 0 chr4 174384222 174384251 -9904411 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 1974 281 50 21 chr4 174384251 174384494 -9904168 - L1M4 LINE L1 -6305 441 206 292 324 51 25 chr4 174384551 174384816 -9903846 + L2 LINE L2 1873 2220 -1094 1846 256 9 7 chr4 174384986 174385411 -9903251 + MER74A LTR ERVL 118 543 -15 1234 328 72 36 chr4 174385422 174385723 -9902939 + L2 LINE L2 2229 2518 -795 2219 99 7 0 chr4 174385723 174386015 -9902647 + AluSx SINE Alu 1 294 -18 1234 328 72 36 chr4 174386015 174386756 -9901906 + L2 LINE L2 2518 3312 -1 324 239 116 22 chr4 174388818 174389263 -9899399 + L1MC/D LINE L1 2998 3621 -2525 561 298 62 40 chr4 174389270 174389693 -9898969 + L1MC/D LINE L1 3792 4223 -1923 597 143 32 24 chr4 174389856 174390109 -9898553 + CT-rich Low_complexity Low_complexity 1 255 0 261 258 26 22 chr4 174390110 174390291 -9898371 + L1MC/D LINE L1 4530 4752 -1394 863 261 4 30 chr4 174390307 174390571 -9898091 + L1MC/D LINE L1 4754 5010 -1136 243 300 23 19 chr4 174390681 174390912 -9897750 + L1MC/D LINE L1 5411 5642 -528 1968 115 11 0 chr4 174391451 174391768 -9896894 - AluSc SINE Alu 0 320 1 1555 147 200 11 chr4 174392544 174392904 -9895758 + MSTA LTR MaLR 1 428 0 472 258 90 21 chr4 174393478 174393711 -9894951 - L1MA9 LINE L1 -38 7295 7047 1042 198 4 43 chr4 174393751 174394008 -9894654 - L1MA9 LINE L1 -270 7063 6817 6147 241 40 51 chr4 174394010 174395253 -9893409 - L1MA9 LINE L1 -2161 5006 3751 513 138 0 0 chr4 174395253 174395333 -9893329 + MADE1 DNA Mariner 1 80 0 6147 241 40 51 chr4 174395333 174396652 -9892010 - L1MA9 LINE L1 -3416 3751 2419 1865 130 0 25 chr4 174396652 174396937 -9891725 - AluSx SINE Alu -21 291 14 6147 241 40 51 chr4 174396937 174398566 -9890096 - L1MA9 LINE L1 -4748 2419 824 451 287 54 85 chr4 174398622 174399163 -9889499 - L1MA9 LINE L1 -6169 999 416 952 92 15 0 chr4 174399203 174399333 -9889329 - AluSg/x SINE Alu -13 299 168 624 222 48 12 chr4 174399336 174399503 -9889159 - L1MA9 LINE L1 -6891 277 105 285 300 42 0 chr4 174399567 174399687 -9888975 + L1MEc LINE L1 1734 1858 -4538 433 261 27 0 chr4 174399706 174399817 -9888845 - L1ME2 LINE L1 -40 6124 6011 4500 108 18 133 chr4 174399871 174401419 -9887243 - pTR5 LTR ERV1 0 2606 1524 260 274 51 33 chr4 174401425 174401623 -9887039 - L1ME2 LINE L1 -213 5951 5745 740 269 6 0 chr4 174401688 174401870 -9886792 + L1MEc LINE L1 37 219 -6177 558 325 45 51 chr4 174401924 174402259 -9886403 - MLT1J LTR MaLR -69 442 110 756 258 77 19 chr4 174402907 174403246 -9885416 + MER57A LTR ERV1 103 401 -2 828 262 37 42 chr4 174403990 174404460 -9884202 - L1MB8 LINE L1 -1 6988 4099 5057 275 39 41 chr4 174404634 174407003 -9881659 - L1MB8 LINE L1 -4589 2370 10 23 68 0 0 chr4 174407095 174407139 -9881523 + AT_rich Low_complexity Low_complexity 1 44 0 1882 148 3 10 chr4 174407390 174407688 -9880974 - AluSx SINE Alu -16 296 1 420 280 48 48 chr4 174409211 174409400 -9879262 + MLT1J LTR MaLR 310 498 -13 5611 203 19 7 chr4 174410535 174411618 -9877044 + L1MA2 LINE L1 24 1119 -6446 * 14489 170 27 9 chr4 174411616 174415610 -9873052 + L1MA2 LINE L1 3658 7723 0 664 229 63 0 chr4 174417354 174417529 -9871133 - MER105 DNA DNA -15 189 4 13020 157 28 32 chr4 174417778 174420200 -9868462 + Tigger1 DNA MER2_type 7 2418 0 945 193 22 9 chr4 174420350 174420600 -9868062 + Tigger4(Zombi) DNA MER2_type 4 300 -2431 859 186 37 5 chr4 174420610 174420798 -9867864 + Tigger4(Zombi) DNA MER2_type 2538 2731 0 27 0 0 0 chr4 174420886 174420913 -9867749 + AT_rich Low_complexity Low_complexity 1 27 0 1741 246 97 4 chr4 174421780 174422267 -9866395 + MER34 LTR ERV1 11 542 0 192 77 0 0 chr4 174422493 174422519 -9866143 + (T)n Simple_repeat Simple_repeat 1 26 0 1789 206 21 79 chr4 174422892 174423372 -9865290 - MLT1D LTR MaLR -41 464 13 1587 209 55 68 chr4 174423426 174423885 -9864777 - MSTB2 LTR MaLR -4 453 1 26 64 0 0 chr4 174423975 174424022 -9864640 + AT_rich Low_complexity Low_complexity 1 47 0 233 98 33 33 chr4 174425007 174425068 -9863594 + (TA)n Simple_repeat Simple_repeat 2 62 0 21 0 0 0 chr4 174425080 174425101 -9863561 + AT_rich Low_complexity Low_complexity 1 21 0 818 306 55 40 chr4 174426003 174426480 -9862182 - LTR33 LTR ERVL -7 514 31 338 342 35 15 chr4 174426821 174427020 -9861642 - L2 LINE L2 -958 2356 2154 181 217 0 43 chr4 174427197 174427243 -9861419 + L2 LINE L2 3270 3313 0 881 311 45 76 chr4 174428183 174428735 -9859927 - L2 LINE L2 0 3313 2788 4435 127 17 5 chr4 174428802 174429546 -9859116 + L1PA12 LINE L1 2380 3134 -4450 2900 250 20 14 chr4 174429546 174430383 -9858279 - L1PA12 LINE L1 -4558 3023 2182 281 306 31 0 chr4 174430597 174430695 -9857967 - L1PA12 LINE L1 -5397 2184 2084 1735 91 0 0 chr4 174431126 174431356 -9857306 - AluY SINE Alu -81 230 1 26 50 0 0 chr4 174431463 174431503 -9857159 + AT_rich Low_complexity Low_complexity 1 40 0 13249 175 41 45 chr4 174433053 174434154 -9854508 - L1P5 LINE L1 -571 6296 5193 180 0 0 0 chr4 174434154 174434174 -9854488 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 13249 175 41 45 chr4 174434174 174437546 -9851116 - L1P5 LINE L1 -1674 5193 1694 257 0 30 0 chr4 174437546 174437579 -9851083 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 13249 175 41 45 chr4 174437579 174438274 -9850388 - L1P5 LINE L1 -5173 1694 998 1069 151 21 5 chr4 174438290 174438476 -9850186 - L1P5 LINE L1 -6674 189 1 1633 123 74 32 chr4 174438493 174438777 -9849885 - AluSx SINE Alu -16 296 1 930 232 58 6 chr4 174439582 174439841 -9848821 - LOR1b LTR ERV1 -143 318 1 321 264 75 29 chr4 174440226 174440400 -9848262 - L1MC5 LINE L1 -44 7917 7736 15963 157 44 41 chr4 174440826 174443768 -9844894 + LOR1b-int LTR ERV1 3641 6427 -1693 1533 46 0 10 chr4 174443768 174443964 -9844698 + L1PA4 LINE L1 5959 6152 -3 15963 157 44 41 chr4 174443964 174444359 -9844303 + LOR1b-int LTR ERV1 6427 6819 -1301 3201 137 11 36 chr4 174444374 174444927 -9843735 + LOR1b-int LTR ERV1 7582 8120 0 1844 181 81 41 chr4 174444927 174445289 -9843373 + LOR1b LTR ERV1 1 386 -75 1905 162 42 25 chr4 174445289 174445647 -9843015 - THE1B LTR MaLR 0 364 1 1844 181 81 41 chr4 174445647 174445727 -9842935 + LOR1b LTR ERV1 386 461 0 28 29 0 0 chr4 174445730 174445765 -9842897 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr4 174446993 174447021 -9841641 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr4 174448344 174448367 -9840295 + (A)n Simple_repeat Simple_repeat 1 23 0 1461 167 77 40 chr4 174448448 174448777 -9839885 - MSTA LTR MaLR 0 428 71 8600 184 35 4 chr4 174448777 174450358 -9838304 - MSTA-int LTR MaLR -20 1631 1 1981 156 113 15 chr4 174450358 174450748 -9837914 - MSTA LTR MaLR 0 428 1 4275 200 42 23 chr4 174451626 174452496 -9836166 - L1MB3 LINE L1 -12 6171 5257 201 74 0 0 chr4 174452496 174452523 -9836139 + (TTG)n Simple_repeat Simple_repeat 1 27 0 4275 200 42 23 chr4 174452523 174452951 -9835711 - L1MB3 LINE L1 -926 5257 4839 469 279 35 45 chr4 174454465 174454666 -9833996 - L1MEc LINE L1 -6049 347 149 225 128 51 0 chr4 174454820 174454859 -9833803 - MLT1G1 LTR MaLR -389 206 166 734 230 47 9 chr4 174454940 174455158 -9833504 - MER61D LTR ERV1 -18 749 338 23 0 0 0 chr4 174455864 174455887 -9832775 + AT_rich Low_complexity Low_complexity 1 23 0 1853 142 3 29 chr4 174456320 174456630 -9832032 + AluSx SINE Alu 1 302 -10 340 110 0 96 chr4 174456850 174456923 -9831739 - LTR16A LTR ERVL 0 450 385 570 203 91 14 chr4 174456937 174457080 -9831582 + FRAM SINE Alu 1 154 -12 2310 153 46 24 chr4 174457713 174458244 -9830418 + LTR35 LTR ERV1 1 616 -2 539 171 9 9 chr4 174458276 174458381 -9830281 + LTR35-int LTR ERV1 328 432 -4504 2021 146 0 0 chr4 174458381 174458713 -9829949 - AluSg SINE Alu 0 332 1 737 264 25 5 chr4 174459017 174459214 -9829448 + MER34C LTR ERV1 157 357 -228 243 304 8 40 chr4 174459215 174459340 -9829322 + MER34C LTR ERV1 311 431 -154 3174 248 88 53 chr4 174459660 174460736 -9827926 + LTR28 LTR ERV1 1 1732 -23 519 231 111 23 chr4 174460807 174461023 -9827639 + LTR35-int LTR ERV1 1214 1448 -3488 570 174 28 0 chr4 174461157 174461266 -9827396 + MER34 LTR ERV1 126 237 -305 1438 239 71 89 chr4 174461374 174461947 -9826715 + LTR35-int LTR ERV1 1554 2136 -2800 2213 107 17 0 chr4 174461947 174462246 -9826416 - AluSc SINE Alu -5 304 1 1438 239 71 89 chr4 174462246 174462792 -9825870 + LTR35-int LTR ERV1 2136 3051 -1885 * 2282 228 14 47 chr4 174462769 174463424 -9825238 + MER57-int LTR ERV1 5185 5817 -1720 985 282 43 27 chr4 174463749 174464118 -9824544 + MER57-int LTR ERV1 5825 6199 -1338 7457 92 8 21 chr4 174464184 174465256 -9823406 + MER11C LTR ERVK 1 1058 -13 1720 297 30 60 chr4 174465671 174466616 -9822046 + MER57-int LTR ERV1 6232 7147 -390 746 237 35 104 chr4 174466619 174467050 -9821612 + MER57A LTR ERV1 3 403 0 353 277 51 22 chr4 174467155 174467292 -9821370 - LTR50 LTR ERVL -634 161 21 42451 34 24 1 chr4 174467616 174473627 -9815035 - L1PA3 LINE L1 0 6155 2 221 81 0 27 chr4 174473766 174473803 -9814859 + (CTG)n Simple_repeat Simple_repeat 3 38 0 537 24 0 37 chr4 174474036 174474118 -9814544 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 879 160 82 46 chr4 174475164 174475358 -9813304 - AluJb SINE Alu -20 292 92 270 0 0 0 chr4 174478612 174478642 -9810020 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 619 291 20 10 chr4 174481204 174481403 -9807259 - MLT1C LTR MaLR 0 467 267 10283 220 40 19 chr4 174481468 174481500 -9807162 + L1MB1 LINE L1 2335 2365 -3803 2240 46 0 21 chr4 174481500 174481785 -9806877 + AluY SINE Alu 1 279 -32 192 40 0 0 chr4 174481785 174481810 -9806852 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 10283 220 40 19 chr4 174481810 174483167 -9805495 + L1MB1 LINE L1 2365 3692 -2476 705 189 0 8 chr4 174483167 174483299 -9805363 + FLAM_C SINE Alu 3 133 0 10283 220 40 19 chr4 174483299 174485663 -9802999 + L1MB1 LINE L1 3692 6165 -3 1170 268 25 7 chr4 174486493 174486777 -9801885 + MLT1E LTR MaLR 292 580 -13 1017 332 58 11 chr4 174487950 174488414 -9800248 - MLT1H1 LTR MaLR 0 555 74 4255 203 39 36 chr4 174488559 174489088 -9799574 - L1MC1 LINE L1 0 6402 5876 2672 33 0 0 chr4 174489088 174489391 -9799271 - AluY SINE Alu -8 303 1 4255 203 39 36 chr4 174489391 174490318 -9798344 - L1MC1 LINE L1 -526 5876 4943 3807 153 7 0 chr4 174490320 174490900 -9797762 - THE1-int LTR MaLR -802 778 195 988 253 58 3 chr4 174491044 174491404 -9797258 + L1M2c LINE L1 2260 2637 -4859 1109 206 0 10 chr4 174491431 174491630 -9797032 + AluJb SINE Alu 87 283 -29 396 0 0 0 chr4 174491630 174491674 -9796988 + (CA)n Simple_repeat Simple_repeat 2 45 0 1356 242 50 90 chr4 174491686 174492572 -9796090 + L1M2c LINE L1 2351 3184 -4381 26 30 0 0 chr4 174492572 174492605 -9796057 + AT_rich Low_complexity Low_complexity 1 33 0 517 271 41 30 chr4 174492673 174492939 -9795723 - L1MC1 LINE L1 -1501 4714 4446 5890 106 18 2 chr4 174492939 174494457 -9794205 + L1PA13 LINE L1 4591 6152 -11 546 323 53 14 chr4 174494749 174495242 -9793420 - L1MC1 LINE L1 -2944 3271 2760 7628 132 33 21 chr4 174495323 174496608 -9792054 + HSMAR2 DNA Mariner 3 1302 0 1414 189 44 25 chr4 174496785 174497102 -9791560 - MER44D DNA MER2_type 0 609 17 1108 263 112 34 chr4 174547219 174547694 -9740968 - MLT1E3 LTR MaLR -112 512 1 646 325 38 42 chr4 174547915 174548280 -9740382 + ERVL LTR ERVL 2196 2560 -3204 1491 226 75 45 chr4 174548280 174548770 -9739892 + MLT1D LTR MaLR 1 505 0 646 325 38 42 chr4 174548770 174548831 -9739831 + ERVL LTR ERVL 2560 2620 -3144 2144 156 33 9 chr4 174548950 174549380 -9739282 + L1MA4 LINE L1 5857 6296 -4 246 81 0 0 chr4 174549436 174549473 -9739189 + (TG)n Simple_repeat Simple_repeat 1 37 0 221 343 65 41 chr4 174549528 174549697 -9738965 - MIR SINE MIR -37 225 53 961 249 82 73 chr4 174550815 174551264 -9737398 - MLT1D LTR MaLR -1 466 14 326 272 56 24 chr4 174551295 174551420 -9737242 + L1MEc LINE L1 2134 2262 -4134 209 270 0 68 chr4 174551613 174551687 -9736975 + L2 LINE L2 3245 3313 0 352 254 62 23 chr4 174552439 174552569 -9736093 - L1MC1 LINE L1 -4128 2268 2134 28 0 0 0 chr4 174553277 174553305 -9735357 + AT_rich Low_complexity Low_complexity 1 28 0 324 83 0 0 chr4 174553983 174554031 -9734631 + (CA)n Simple_repeat Simple_repeat 2 49 0 2077 137 7 0 chr4 174554302 174554608 -9734054 + AluSg SINE Alu 1 308 -2 1623 222 127 4 chr4 174554621 174555071 -9733591 + MLT1D LTR MaLR 1 505 0 1343 220 59 99 chr4 174555664 174556070 -9732592 - MLT1A1 LTR MaLR 0 385 1 1811 115 31 7 chr4 174556235 174556523 -9732139 - L1PA13 LINE L1 -76 6087 5793 13881 212 29 33 chr4 174556681 174559430 -9729232 + L1MA4 LINE L1 1928 4687 -2315 1963 134 67 17 chr4 174559430 174559787 -9728875 - THE1C LTR MaLR 0 375 1 13881 212 29 33 chr4 174559787 174560248 -9728414 + L1MA4 LINE L1 4687 5148 -1854 2221 106 6 6 chr4 174560248 174560559 -9728103 + AluY SINE Alu 1 311 0 13881 212 29 33 chr4 174560559 174561951 -9726711 + L1MA4 LINE L1 5148 6550 -452 2311 89 0 0 chr4 174563255 174563546 -9725116 - AluSg SINE Alu -17 293 3 2034 107 4 4 chr4 174564628 174564941 -9723721 + AluSx SINE Alu 5 317 0 3619 179 34 90 chr4 174566886 174567866 -9720796 + Charlie1a DNA MER1_type 42 966 -489 204 40 0 0 chr4 174567891 174567916 -9720746 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 484 263 50 110 chr4 174568110 174568216 -9720446 + L2 LINE L2 3036 3147 -166 297 0 0 0 chr4 174568216 174568249 -9720413 + (TA)n Simple_repeat Simple_repeat 1 33 0 484 263 50 110 chr4 174568249 174568423 -9720239 + L2 LINE L2 3147 3299 -14 297 0 0 0 chr4 174568460 174568493 -9720169 + (TG)n Simple_repeat Simple_repeat 1 33 0 332 299 166 57 chr4 174568794 174569005 -9719657 + L3 LINE CR1 1337 1570 -7 914 199 24 15 chr4 174569301 174569507 -9719155 - L1PB4 LINE L1 -2 6154 5947 231 240 0 27 chr4 174569571 174569646 -9719016 + L1PB4 LINE L1 2844 2916 -3933 1351 171 7 0 chr4 174569662 174570041 -9718621 + L1PB4 LINE L1 2905 6659 -200 5531 141 5 36 chr4 174570401 174571248 -9717414 - L1PA14 LINE L1 -16 6145 5369 10603 27 4 135 chr4 174571248 174572839 -9715823 + SVA Other Other 5 1386 0 5531 141 5 36 chr4 174572839 174573623 -9715039 - L1PA14 LINE L1 -792 5369 4563 23902 61 2 1 chr4 174573623 174577633 -9711029 + L1PA2 LINE L1 2141 6153 -2 23 54 0 0 chr4 174577917 174577954 -9710708 + AT_rich Low_complexity Low_complexity 1 37 0 1461 159 39 42 chr4 174578925 174579208 -9709454 - AluJo SINE Alu -15 297 16 25 0 0 0 chr4 174579248 174579273 -9709389 + AT_rich Low_complexity Low_complexity 1 25 0 22 56 0 0 chr4 174579894 174579930 -9708732 + AT_rich Low_complexity Low_complexity 1 36 0 270 239 14 14 chr4 174582594 174582665 -9705997 - MIR SINE MIR -72 136 66 453 326 239 34 chr4 174582723 174583550 -9705112 - L3 LINE CR1 -298 1279 283 204 258 149 102 chr4 174584112 174584199 -9704463 + L2 LINE L2 2944 3025 -288 2078 67 4 4 chr4 174584199 174584468 -9704194 - AluY SINE Alu -8 303 35 204 258 149 102 chr4 174584468 174584675 -9703987 + L2 LINE L2 3025 3252 -61 906 220 110 25 chr4 174585022 174585359 -9703303 - MSTD LTR MaLR 0 396 2 3420 178 30 0 chr4 174585359 174586032 -9702630 - L1MB2 LINE L1 -18 6153 5461 1607 177 7 7 chr4 174586149 174586437 -9702225 - AluJb SINE Alu -24 288 1 261 375 29 7 chr4 174586656 174586792 -9701870 + MIR3 SINE MIR 63 201 -7 1513 179 0 0 chr4 174587630 174587876 -9700786 + AluJo SINE Alu 49 294 -18 12373 122 27 10 chr4 174587975 174589961 -9698701 - Tigger1 DNA MER2_type -1 2417 399 1616 199 0 0 chr4 174589956 174590248 -9698414 - Tigger1 DNA MER2_type -2126 292 1 * 374 113 41 0 chr4 174590549 174590646 -9698016 + (TTAA)n Simple_repeat Simple_repeat 1 101 0 22 70 0 0 chr4 174590647 174590690 -9697972 + AT_rich Low_complexity Low_complexity 1 43 0 2091 126 0 13 chr4 174591141 174591443 -9697219 + AluSx SINE Alu 1 298 -14 1516 154 46 36 chr4 174591960 174592240 -9696422 + AluJo SINE Alu 7 289 -23 225 250 0 0 chr4 174593575 174593623 -9695039 + CT-rich Low_complexity Low_complexity 1 48 0 276 77 0 0 chr4 174593949 174593988 -9694674 + (TTATA)n Simple_repeat Simple_repeat 4 42 0 24 67 0 0 chr4 174594052 174594097 -9694565 + AT_rich Low_complexity Low_complexity 1 45 0 389 294 54 92 chr4 174595599 174595915 -9692747 - L1MDa LINE L1 -3157 3383 3080 410 310 71 48 chr4 174595991 174596101 -9692561 - L1MDa LINE L1 -3614 2926 2820 2071 109 3 0 chr4 174596101 174596386 -9692276 - AluSx SINE Alu -18 294 9 410 310 71 48 chr4 174596386 174596668 -9691994 - L1MDa LINE L1 -3720 2820 2525 255 303 90 0 chr4 174597038 174597127 -9691535 + L2 LINE L2 3214 3310 -3 381 250 12 6 chr4 174597501 174597669 -9690993 + (TA)n Simple_repeat Simple_repeat 2 170 0 21 0 0 0 chr4 174599041 174599062 -9689600 + AT_rich Low_complexity Low_complexity 1 21 0 499 114 13 0 chr4 174600433 174600512 -9688150 - MADE1 DNA Mariner 0 80 1 779 267 16 5 chr4 174601275 174601462 -9687200 + MIR SINE MIR 72 260 -2 1510 192 3 45 chr4 174601573 174601886 -9686776 + AluJo SINE Alu 1 300 -12 603 165 49 0 chr4 174601897 174602061 -9686601 + GA-rich Low_complexity Low_complexity 4 175 0 714 263 55 51 chr4 174603387 174603614 -9685048 - MIR SINE MIR -5 257 27 2571 20 7 3 chr4 174603614 174603917 -9684745 - AluY SINE Alu -7 304 1 714 263 55 51 chr4 174603917 174603944 -9684718 - MIR SINE MIR -235 27 2 23 0 0 0 chr4 174604671 174604694 -9683968 + AT_rich Low_complexity Low_complexity 1 23 0 248 239 30 0 chr4 174604872 174604939 -9683723 - MIR SINE MIR -96 166 98 358 311 98 21 chr4 174605007 174605200 -9683462 - MIR SINE MIR 0 262 55 722 242 57 33 chr4 174605201 174605412 -9683250 + LTR40c LTR ERVL 2 217 -248 297 0 0 0 chr4 174605665 174605698 -9682964 + (TG)n Simple_repeat Simple_repeat 2 34 0 1806 116 0 4 chr4 174605698 174605948 -9682714 - AluSc SINE Alu -26 283 35 264 255 11 11 chr4 174605980 174606074 -9682588 - HAL1 LINE L1 -322 2185 2092 184 122 49 0 chr4 174606095 174606136 -9682526 + (TA)n Simple_repeat Simple_repeat 1 43 0 22 0 0 0 chr4 174607117 174607139 -9681523 + AT_rich Low_complexity Low_complexity 1 22 0 6696 231 106 29 chr4 174607652 174608611 -9680051 - L1MDa LINE L1 -4377 2163 1279 1673 186 0 7 chr4 174608611 174608912 -9679750 - AluJb SINE Alu -13 299 1 6696 231 106 29 chr4 174608912 174609958 -9678704 - L1MDa LINE L1 -5261 1279 4 809 160 23 34 chr4 174611903 174612078 -9676584 + L1MC1 LINE L1 6161 6333 0 717 204 29 17 chr4 174614022 174614194 -9674468 + L1MA7 LINE L1 6041 6214 -77 606 316 62 59 chr4 174614936 174615205 -9673457 + L1ME3A LINE L1 5296 5563 -607 2322 84 0 7 chr4 174615205 174615514 -9673148 + AluSc SINE Alu 1 307 -2 606 316 62 59 chr4 174615514 174615892 -9672770 + L1ME3A LINE L1 5563 5945 -225 321 228 0 0 chr4 174615912 174615991 -9672671 + (TA)n Simple_repeat Simple_repeat 2 80 0 1126 191 110 35 chr4 174616199 174616481 -9672181 + MLT1D LTR MaLR 159 461 -44 1396 247 50 42 chr4 174616491 174616969 -9671693 + MER74B LTR ERVL 66 547 -75 334 278 52 9 chr4 174616898 174617013 -9671649 - MER88 LTR ERVL -299 165 46 * 312 143 0 0 chr4 174617035 174617084 -9671578 + MLT1D LTR MaLR 457 505 0 1658 155 38 3 chr4 174618695 174618985 -9669677 - AluSx SINE Alu -12 300 1 43 0 0 0 chr4 174619406 174619449 -9669213 + AT_rich Low_complexity Low_complexity 1 43 0 1086 217 45 21 chr4 174619449 174619757 -9668905 - L1MB5 LINE L1 -6 6174 5853 1791 145 13 19 chr4 174620635 174620946 -9667716 - AluSg SINE Alu -1 309 1 700 256 61 11 chr4 174622082 174622262 -9666400 + MLT1H1 LTR MaLR 367 555 0 234 337 50 0 chr4 174622445 174622546 -9666116 + MLT1-int LTR MaLR 362 467 -904 324 302 50 104 chr4 174622990 174623354 -9665308 + MLT1-int LTR MaLR 1004 1347 -24 1206 267 67 9 chr4 174623398 174623739 -9664923 + MLT1H1 LTR MaLR 151 511 -44 2501 238 52 35 chr4 174623805 174624983 -9663679 - L1ME1 LINE L1 -73 6093 4896 23 33 0 0 chr4 174625250 174625280 -9663382 + AT_rich Low_complexity Low_complexity 1 30 0 1761 194 30 115 chr4 174626207 174626806 -9661856 - L1MD3 LINE L1 -27 7968 7421 5266 194 21 34 chr4 174627265 174628428 -9660234 + L1 LINE L1 1070 2218 -4631 1200 222 3 34 chr4 174628846 174629143 -9659519 + L1 LINE L1 5770 6057 -791 2793 185 36 2 chr4 174629243 174629847 -9658815 + L1MA4A LINE L1 1770 2394 -4455 4943 167 7 19 chr4 174629971 174631055 -9657607 + L1MA4A LINE L1 5770 6846 -159 533 163 14 50 chr4 174631131 174631258 -9657404 + L1MA4A LINE L1 6863 6986 -19 501 56 127 0 chr4 174631258 174631329 -9657333 + MADE1 DNA Mariner 1 80 0 533 163 14 50 chr4 174631329 174631342 -9657320 + L1MA4A LINE L1 6986 6998 -7 202 325 146 50 chr4 174631645 174632110 -9656552 - L2 LINE L2 -339 2975 2466 364 336 179 34 chr4 174632393 174633208 -9655454 - L2 LINE L2 -1050 2264 1332 347 328 85 65 chr4 174634582 174635125 -9653537 + ERVL LTR ERVL 1031 1584 -4180 589 114 19 0 chr4 174635458 174635563 -9653099 + (TCTA)n Simple_repeat Simple_repeat 1 107 0 783 197 37 17 chr4 174636158 174636384 -9652278 + MER106B DNA MER1_type 6 1059 0 245 325 35 18 chr4 174639637 174639751 -9648911 - L2 LINE L2 -3 3310 3195 1889 275 80 27 chr4 174640397 174641045 -9647617 + L1ME3A LINE L1 3359 4078 -2068 2341 62 3 10 chr4 174641045 174641353 -9647309 - AluY SINE Alu -5 306 1 1889 275 80 27 chr4 174641353 174641680 -9646982 + L1ME3A LINE L1 4078 4386 -1760 234 0 0 0 chr4 174641680 174641706 -9646956 + (CA)n Simple_repeat Simple_repeat 2 27 0 3598 189 103 74 chr4 174641706 174642140 -9646522 + L1MC3 LINE L1 6647 7067 -718 247 263 13 40 chr4 174642140 174642216 -9646446 + MLT1F1 LTR MaLR 43 116 -451 2070 146 89 22 chr4 174642218 174642623 -9646039 + MSTB1 LTR MaLR 1 432 0 3598 189 103 74 chr4 174642623 174643216 -9645446 + L1MC3 LINE L1 7067 7784 -1 251 193 151 25 chr4 174643240 174643359 -9645303 + L1ME3A LINE L1 4410 4543 -1603 463 258 106 40 chr4 174643829 174644151 -9644511 + L1ME3A LINE L1 4471 4813 -1333 242 270 113 0 chr4 174644269 174644384 -9644278 + L1ME3A LINE L1 4987 5114 -1032 419 286 83 71 chr4 174644538 174644934 -9643728 + L1ME3A LINE L1 5291 5701 -469 1685 104 4 0 chr4 174644934 174645174 -9643488 - AluSx SINE Alu -18 294 54 419 286 83 71 chr4 174645174 174645368 -9643294 + L1ME3A LINE L1 5701 5891 -279 393 276 79 6 chr4 174646150 174646307 -9642355 + L1ME3A LINE L1 5991 6170 0 234 314 0 14 chr4 174646400 174646470 -9642192 + L2 LINE L2 3245 3313 0 844 265 11 66 chr4 174647136 174647483 -9641179 - L1ME3 LINE L1 -1 6161 5834 1236 208 20 105 chr4 174647501 174647958 -9640704 + MER65C LTR ERV1 1 418 -43 26 0 0 0 chr4 174648212 174648238 -9640424 + AT_rich Low_complexity Low_complexity 1 26 0 225 91 136 0 chr4 174648939 174648983 -9639679 + Alu SINE Alu 250 299 -1 22 56 0 0 chr4 174651234 174651270 -9637392 + AT_rich Low_complexity Low_complexity 1 36 0 297 0 0 0 chr4 174651531 174651564 -9637098 + (CA)n Simple_repeat Simple_repeat 2 34 0 3947 251 49 25 chr4 174651647 174652836 -9635826 - L1M4b LINE L1 -5301 1245 14 257 332 184 21 chr4 174653028 174653218 -9635444 - MIR SINE MIR -34 228 8 1607 291 101 41 chr4 174653427 174654413 -9634249 - HAL1 LINE L1 -40 2467 1422 22 0 0 0 chr4 174654579 174654601 -9634061 + AT_rich Low_complexity Low_complexity 1 22 0 584 259 75 0 chr4 174654632 174654779 -9633883 - MER5B DNA MER1_type -19 159 2 2946 67 0 3 chr4 174655262 174655650 -9633012 + L1PA4 LINE L1 5766 6152 -3 23 68 0 0 chr4 174656997 174657041 -9631621 + AT_rich Low_complexity Low_complexity 1 44 0 204 40 0 0 chr4 174658188 174658213 -9630449 + (TTCCC)n Simple_repeat Simple_repeat 1 25 0 685 244 89 9 chr4 174658585 174658810 -9629852 + L1MC4 LINE L1 6461 6703 -1339 1290 264 108 8 chr4 174658854 174659362 -9629300 + L1MC4 LINE L1 7342 7900 -142 319 291 24 55 chr4 174661550 174661677 -9626985 + HAL1 LINE L1 1441 1563 -944 2468 165 39 33 chr4 174661746 174662285 -9626377 + L1MC2 LINE L1 5795 6336 -8 213 39 0 0 chr4 174662352 174662378 -9626284 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 180 176 0 0 chr4 174662434 174662468 -9626194 + (TA)n Simple_repeat Simple_repeat 1 34 0 239 54 27 0 chr4 174662736 174662773 -9625889 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 292 271 14 0 chr4 174662788 174662858 -9625804 + Charlie7 DNA MER1_type 507 577 -2035 28716 34 15 0 chr4 174662870 174668888 -9619774 + L1PA2 LINE L1 1 6154 -1 207 0 0 0 chr4 174670302 174670325 -9618337 + (A)n Simple_repeat Simple_repeat 1 23 0 32 0 0 0 chr4 174672078 174672110 -9616552 + AT_rich Low_complexity Low_complexity 1 32 0 235 289 0 22 chr4 174672306 174672396 -9616266 + L2 LINE L2 1419 1506 -1808 2089 72 0 75 chr4 174672411 174672732 -9615930 + AluY SINE Alu 1 297 -14 959 215 154 40 chr4 174672891 174673189 -9615473 + MLT1D LTR MaLR 173 504 -1 4909 246 35 14 chr4 174673192 174673886 -9614776 - L1M4 LINE L1 -5176 1366 631 1509 192 73 24 chr4 174673886 174674255 -9614407 - MLT1B LTR MaLR 0 390 4 4909 246 35 14 chr4 174674255 174674883 -9613779 - L1M4 LINE L1 -5911 631 17 651 173 0 0 chr4 174675132 174675289 -9613373 - AluJo SINE Alu 0 333 177 673 186 0 0 chr4 174675291 174675404 -9613258 - AluJo SINE Alu -199 113 1 224 59 29 0 chr4 174676186 174676220 -9612442 + (CA)n Simple_repeat Simple_repeat 1 35 0 202 143 24 0 chr4 174676733 174676775 -9611887 + (TA)n Simple_repeat Simple_repeat 1 43 0 1655 176 40 31 chr4 174677731 174678084 -9610578 + MLT1A1 LTR MaLR 4 359 -6 2172 119 0 0 chr4 174678245 174678547 -9610115 - AluSc SINE Alu -7 302 1 1574 172 39 0 chr4 174679365 174679650 -9609012 + AluJo SINE Alu 1 296 -16 2354 63 10 0 chr4 174680355 174680654 -9608008 + AluY SINE Alu 1 302 -9 251 267 137 50 chr4 174680834 174680995 -9607667 - MIR SINE MIR -21 241 67 249 311 60 3 chr4 174681709 174681914 -9606748 + L1M2c LINE L1 940 1305 -4825 332 232 107 85 chr4 174682248 174682425 -9606237 + L2 LINE L2 1639 1819 -1495 260 213 0 0 chr4 174682432 174682479 -9606183 + MER47A DNA MER2_type 2 48 -318 1615 182 11 69 chr4 174682503 174682882 -9605780 + MER47A DNA MER2_type 10 366 0 320 200 120 20 chr4 174682883 174682983 -9605679 + L2 LINE L2 1825 1934 -1380 1026 312 88 9 chr4 174682993 174683416 -9605246 + L2 LINE L2 2153 2608 -706 28 48 0 0 chr4 174683712 174683754 -9604908 + AT_rich Low_complexity Low_complexity 1 42 0 2766 170 18 4 chr4 174683930 174684418 -9604244 + LOR1a LTR ERV1 1 495 -2 236 313 31 0 chr4 174685207 174685271 -9603391 + MIR SINE MIR 38 103 -105 201 408 5 25 chr4 174685909 174686110 -9602552 - L2 LINE L2 -337 2977 2781 269 320 90 22 chr4 174686122 174686300 -9602362 - L2 LINE L2 -676 2638 2449 2210 221 30 65 chr4 174686300 174686934 -9601728 - LTR9 LTR ERV1 0 612 1 1513 249 148 11 chr4 174686941 174687414 -9601248 + MLT1F1 LTR MaLR 1 538 -29 218 287 11 11 chr4 174688150 174688161 -9600501 + (TA)n Simple_repeat Simple_repeat 2 12 -83 1946 160 9 12 chr4 174688161 174688505 -9600157 - MER2 DNA MER2_type -1 343 1 218 287 11 11 chr4 174688505 174688587 -9600075 + (TA)n Simple_repeat Simple_repeat 11 95 0 204 330 103 47 chr4 174688617 174688850 -9599812 - L2 LINE L2 -72 3241 2996 239 294 94 44 chr4 174689421 174689696 -9598966 + HAL1 LINE L1 1521 1809 -698 5832 141 100 12 chr4 174689955 174690751 -9597911 + Tigger3b DNA MER2_type 1 927 -2101 185 65 32 0 chr4 174690751 174690782 -9597880 + (CTCA)n Simple_repeat Simple_repeat 3 34 0 5832 141 100 12 chr4 174690782 174691117 -9597545 + Tigger3b DNA MER2_type 927 1231 0 1958 154 0 0 chr4 174691163 174691449 -9597213 + AluSx SINE Alu 1 286 -26 28 0 0 0 chr4 174691449 174691477 -9597185 + AT_rich Low_complexity Low_complexity 1 28 0 360 305 40 58 chr4 174691737 174691963 -9596699 - L2 LINE L2 -14 3299 3078 241 222 28 0 chr4 174692146 174692218 -9596444 + (TA)n Simple_repeat Simple_repeat 1 74 0 263 169 14 0 chr4 174692801 174692872 -9595790 + (CA)n Simple_repeat Simple_repeat 1 72 0 24 32 0 0 chr4 174692898 174692929 -9595733 + AT_rich Low_complexity Low_complexity 1 31 0 1377 222 120 85 chr4 174695612 174696212 -9592450 - LTR1B LTR ERV1 -24 802 182 1987 125 78 26 chr4 174696221 174696565 -9592097 - THE1B LTR MaLR 0 364 3 7848 131 5 1 chr4 174696567 174697725 -9590937 - THE1B-int LTR MaLR 0 1580 418 374 23 0 0 chr4 174697732 174697775 -9590887 - THE1C LTR MaLR -331 44 2 198 286 18 0 chr4 174697792 174697848 -9590814 - MER5A DNA MER1_type -83 106 50 276 375 36 32 chr4 174698090 174698338 -9590324 + L2 LINE L2 2263 2511 -803 777 99 33 0 chr4 174698550 174698671 -9589991 - L1MA2 LINE L1 0 6304 6180 376 311 0 0 chr4 174698800 174698906 -9589756 - MLT1J LTR MaLR -297 214 109 378 296 170 75 chr4 174698910 174699204 -9589458 + MLT1J LTR MaLR 190 511 0 2051 122 3 0 chr4 174699332 174699619 -9589043 - AluSx SINE Alu -24 288 1 273 330 159 30 chr4 174702099 174702363 -9586299 - L2 LINE L2 -5 3267 2970 440 238 73 18 chr4 174703184 174703394 -9585268 + MER106B DNA MER1_type 16 1056 -3 23 54 0 0 chr4 174704183 174704220 -9584442 + AT_rich Low_complexity Low_complexity 1 37 0 222 317 67 42 chr4 174704220 174704340 -9584322 + L3 LINE CR1 1419 1541 -36 1794 114 0 4 chr4 174705003 174705257 -9583405 + AluY SINE Alu 49 301 -10 1033 251 87 52 chr4 174707655 174708137 -9580525 + L1ME3A LINE L1 5514 6012 -158 1684 224 72 69 chr4 174709180 174709835 -9578827 + L1ME3A LINE L1 5514 6170 0 29 70 0 0 chr4 174710363 174710420 -9578242 + AT_rich Low_complexity Low_complexity 1 57 0 227 317 0 0 chr4 174713181 174713241 -9575421 + CT-rich Low_complexity Low_complexity 4 63 0 329 0 24 0 chr4 174713287 174713328 -9575334 + (TG)n Simple_repeat Simple_repeat 2 43 0 34 42 0 0 chr4 174714023 174714071 -9574591 + AT_rich Low_complexity Low_complexity 1 48 0 231 309 43 75 chr4 174714435 174714529 -9574133 + L2 LINE L2 3182 3272 0 199 404 27 16 chr4 174714990 174715178 -9573484 - MIR3 SINE MIR -5 203 14 199 364 146 25 chr4 174715838 174716077 -9572585 + L2 LINE L2 2580 2847 -467 4829 198 17 24 chr4 174716203 174717862 -9570800 - L1MA10 LINE L1 -14 6320 4677 227 276 35 0 chr4 174718151 174718209 -9570453 + L2 LINE L2 3252 3311 -2 690 180 0 0 chr4 174718394 174718516 -9570146 - AluSg/x SINE Alu -9 303 182 1573 218 30 98 chr4 174718588 174719060 -9569602 - MER31B LTR ERV1 -9 457 18 562 292 80 76 chr4 174719453 174720407 -9568255 + L1ME LINE L1 27 989 -5130 2312 96 0 19 chr4 174720407 174720721 -9567941 + AluSg SINE Alu 1 308 -2 562 292 80 76 chr4 174720721 174720992 -9567670 + L1ME LINE L1 989 1257 -4862 416 310 100 66 chr4 174721212 174721660 -9567002 + L1ME LINE L1 2181 2653 -3476 1696 145 20 27 chr4 174721660 174721956 -9566706 - AluJo SINE Alu -18 294 1 416 310 100 66 chr4 174721956 174722056 -9566606 + L1ME LINE L1 2653 2748 -3381 365 255 95 52 chr4 174722235 174722466 -9566196 + L1ME LINE L1 3030 3270 -2859 2053 140 0 19 chr4 174722641 174722948 -9565714 + AluSx SINE Alu 1 301 -11 328 246 170 47 chr4 174722948 174723119 -9565543 + L1ME LINE L1 5373 5564 -2204 243 286 62 73 chr4 174723131 174723390 -9565272 + L1ME LINE L1 5599 5854 -299 468 346 29 57 chr4 174723826 174724349 -9564313 - ERVL LTR ERVL -480 5284 4777 2303 122 8 52 chr4 174724369 174724771 -9563891 - MLT1B LTR MaLR 0 390 7 5318 79 25 4 chr4 174724985 174725735 -9562927 - MER4E LTR ERV1 0 766 1 26 0 0 0 chr4 174726074 174726100 -9562562 + AT_rich Low_complexity Low_complexity 1 26 0 1727 182 15 78 chr4 174726494 174726906 -9561756 + MLT1B LTR MaLR 3 388 -2 1201 203 3 67 chr4 174728078 174728378 -9560284 + AluJo SINE Alu 1 281 -31 2846 10 0 0 chr4 174729132 174729441 -9559221 - AluYa5 SINE Alu -2 309 1 24 67 0 0 chr4 174729597 174729642 -9559020 + AT_rich Low_complexity Low_complexity 1 45 0 3137 86 29 0 chr4 174729699 174730143 -9558519 - L1PA10 LINE L1 -9 6159 5703 186 303 76 62 chr4 174730740 174730885 -9557777 + L2 LINE L2 3167 3313 0 251 309 62 10 chr4 174731418 174731515 -9557147 + MIR SINE MIR 46 147 -61 28 0 0 0 chr4 174731699 174731727 -9556935 + AT_rich Low_complexity Low_complexity 1 28 0 1345 197 16 22 chr4 174731728 174732048 -9556614 - L1MB7 LINE L1 -2 6182 5865 515 175 0 109 chr4 174732138 174732275 -9556387 - L1MC1 LINE L1 -10 6323 6202 5777 209 60 12 chr4 174732283 174734869 -9553793 - L1MC1 LINE L1 -81 6532 3819 3038 250 31 9 chr4 174734969 174735948 -9552714 - L1MC1 LINE L1 -2851 3575 2576 2143 156 11 16 chr4 174735948 174736320 -9552342 - Tigger7 DNA MER2_type 0 2587 2218 3769 209 11 32 chr4 174736320 174737106 -9551556 - Tigger7 DNA MER2_type -1717 770 1 382 198 33 0 chr4 174737107 174737198 -9551464 - L1MC1 LINE L1 -3991 2616 2523 3135 132 110 18 chr4 174737202 174737998 -9550664 - L1MC1 LINE L1 -3961 2465 1505 2943 146 30 6 chr4 174738001 174738474 -9550188 + LTR9B LTR ERV1 5 488 -156 839 148 36 43 chr4 174738641 174738849 -9549813 - L1MCa LINE L1 -4561 1865 1506 3246 126 25 6 chr4 174738849 174739332 -9549330 + LTR9B LTR ERV1 1 492 -152 2651 205 24 55 chr4 174739364 174740180 -9548482 + MER4D LTR ERV1 1 903 0 5587 168 40 59 chr4 174740180 174741459 -9547203 - L1MCa LINE L1 -5067 1359 105 4171 19 0 0 chr4 174741453 174741935 -9546727 - L1P LINE L1 -1946 4200 3719 * 1791 41 0 0 chr4 174741935 174742152 -9546510 + L1PA3 LINE L1 5935 6152 -3 444 246 0 9 chr4 174742170 174742280 -9546382 - L1MCa LINE L1 -6317 109 1 5377 18 0 0 chr4 174742397 174743454 -9545208 - L1PA3 LINE L1 -287 5868 4812 478 338 129 28 chr4 174743645 174744033 -9544629 + L2 LINE L2 2886 3312 -1 1852 128 39 58 chr4 174745361 174745743 -9542919 - THE1C LTR MaLR 0 375 1 321 26 0 0 chr4 174746224 174746262 -9542400 + (TG)n Simple_repeat Simple_repeat 1 38 0 879 278 50 38 chr4 174747217 174747537 -9541125 + LTR40a LTR ERVL 193 516 -3 1305 286 102 44 chr4 174747749 174748403 -9540259 + HERVL68 LTR ERVL 917 1608 -3922 2801 245 75 49 chr4 174748403 174748478 -9540184 + HERVL68 LTR ERVL 2520 2592 -2938 1500 220 22 71 chr4 174748478 174748969 -9539693 + MLT1C LTR MaLR 1 467 0 2801 245 75 49 chr4 174748969 174749763 -9538899 + HERVL68 LTR ERVL 2592 3411 -2119 2407 269 25 17 chr4 174749780 174750433 -9538229 + HERVL68 LTR ERVL 3885 4542 -988 1030 186 62 95 chr4 174750486 174750639 -9538023 + MLT1E-int LTR MaLR 350 506 -865 216 0 0 0 chr4 174750639 174750663 -9537999 + (TG)n Simple_repeat Simple_repeat 1 24 0 * 267 31 0 0 chr4 174750662 174750694 -9537968 + (GA)n Simple_repeat Simple_repeat 1 32 0 1030 186 62 95 chr4 174750663 174750846 -9537816 + MLT1E-int LTR MaLR 506 645 -726 557 286 16 16 chr4 174750995 174751187 -9537475 + MLT1E-int LTR MaLR 696 887 -484 406 239 97 15 chr4 174751614 174751748 -9536914 + MLT1E-int LTR MaLR 1227 1371 0 1691 273 65 19 chr4 174751755 174752322 -9536340 + MLT1E LTR MaLR 1 593 0 316 321 36 21 chr4 174753116 174753309 -9535353 + MER89-int LTR ERV1 6081 6276 -525 2172 131 3 3 chr4 174753309 174753622 -9535040 + AluSq SINE Alu 1 313 0 294 335 86 0 chr4 174753747 174753899 -9534763 + HERVL68 LTR ERVL 2824 2988 -49 1640 230 82 25 chr4 174754024 174754511 -9534151 + LTR40a LTR ERVL 5 519 0 2016 209 40 19 chr4 174756426 174756851 -9531811 + MLT2B1 LTR ERVL 75 508 -12 273 162 29 15 chr4 174757522 174757590 -9531072 + MLT1J1 LTR MaLR 369 437 -9 234 250 216 0 chr4 174757612 174757728 -9530934 - MER106B DNA MER1_type -19 1040 900 233 329 106 68 chr4 174757825 174758147 -9530515 + L2 LINE L2 2823 3156 -157 1094 329 90 31 chr4 174758611 174759188 -9529474 - HERVL LTR ERVL -1867 3787 3177 695 260 0 0 chr4 174759190 174759336 -9529326 + MER58A DNA MER1_type 1 146 0 563 215 0 0 chr4 174759361 174759468 -9529194 + MER58A DNA MER1_type 118 224 0 677 315 28 9 chr4 174759480 174759696 -9528966 - HERVL LTR ERVL -2498 3156 2937 1968 90 4 4 chr4 174759803 174760059 -9528603 + AluSq SINE Alu 6 261 -52 271 114 0 0 chr4 174760161 174760205 -9528457 + MLT1E3 LTR MaLR 581 624 0 205 86 0 29 chr4 174761207 174761242 -9527420 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 371 21 21 0 chr4 174761466 174761514 -9527148 + (TG)n Simple_repeat Simple_repeat 2 50 0 434 285 116 6 chr4 174762063 174762235 -9526427 + MIR SINE MIR 2 192 -70 25 75 0 0 chr4 174763417 174763470 -9525192 + AT_rich Low_complexity Low_complexity 1 53 0 3016 145 0 28 chr4 174764181 174764691 -9523971 + HSMAR2 DNA Mariner 2 497 -805 1247 125 0 6 chr4 174764695 174764871 -9523791 - AluSq SINE Alu -3 310 136 31 68 0 0 chr4 174764970 174765029 -9523633 + AT_rich Low_complexity Low_complexity 1 59 0 24 77 0 0 chr4 174765073 174765125 -9523537 + AT_rich Low_complexity Low_complexity 1 52 0 1267 222 130 26 chr4 174765346 174765770 -9522892 - L1MD2 LINE L1 -13 6346 5879 709 158 31 24 chr4 174765779 174765906 -9522756 + Tigger2 DNA MER2_type 2570 2697 -21 1058 174 20 0 chr4 174765911 174766106 -9522556 - L1PA16 LINE L1 0 6166 5968 5581 232 38 32 chr4 174766114 174768638 -9520024 - L1MD2 LINE L1 -467 5892 3329 2067 102 0 41 chr4 174768740 174769054 -9519608 + AluSx SINE Alu 11 311 -1 248 220 138 3 chr4 174769280 174769423 -9519239 - L1P LINE L1 -741 5414 5254 201 74 0 0 chr4 174769423 174769450 -9519212 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 468 264 49 24 chr4 174769640 174769886 -9518776 - L1M4 LINE L1 -900 5246 4995 446 224 23 106 chr4 174769894 174770317 -9518345 + L1MDa LINE L1 2451 2846 -3694 1126 249 92 17 chr4 174770323 174770669 -9517993 + MLT1A2 LTR MaLR 1 372 -2 288 266 25 0 chr4 174770682 174770761 -9517901 + L1MDa LINE L1 2859 2939 -3601 2120 122 16 0 chr4 174770766 174771070 -9517592 + AluSx SINE Alu 4 312 0 906 275 82 0 chr4 174771100 174771456 -9517206 + L1MDa LINE L1 3034 3418 -3122 1453 195 8 0 chr4 174771456 174771712 -9516950 + MLT2B1 LTR ERVL 1 258 -262 994 248 7 16 chr4 174772736 174773046 -9515616 + MLT2B1 LTR ERVL 248 554 0 2915 236 55 31 chr4 174773048 174773359 -9515303 + L1MDa LINE L1 3416 3718 -2822 2222 69 3 13 chr4 174773359 174773663 -9514999 + AluY SINE Alu 1 301 -10 2915 236 55 31 chr4 174773663 174774483 -9514179 + L1MDa LINE L1 3718 4574 -1966 * 3306 42 0 0 chr4 174774479 174774879 -9513783 - L1PA4 LINE L1 -99 6056 5657 229 227 13 13 chr4 174775340 174775415 -9513247 + (CATATA)n Simple_repeat Simple_repeat 4 78 0 226 264 0 0 chr4 174775438 174775491 -9513171 - HAL1 LINE L1 -1791 716 664 252 184 0 0 chr4 174775496 174775545 -9513117 + (CATATA)n Simple_repeat Simple_repeat 3 51 0 311 218 23 69 chr4 174775545 174775632 -9513030 - L1MC4 LINE L1 -1339 6703 6621 456 207 0 98 chr4 174826014 174826103 -9462559 - L1M4 LINE L1 -846 5300 5233 2296 79 13 25 chr4 174826103 174826420 -9462242 + AluSp SINE Alu 1 313 0 456 207 0 98 chr4 174826420 174826494 -9462168 - L1M4 LINE L1 -913 5233 5153 278 130 0 19 chr4 174827949 174827965 -9460697 + (TC)n Simple_repeat Simple_repeat 2 17 -37 2254 121 0 0 chr4 174827965 174828272 -9460390 - AluSc SINE Alu -2 307 1 278 130 0 19 chr4 174828272 174828309 -9460353 + (TC)n Simple_repeat Simple_repeat 17 54 0 921 169 0 0 chr4 174828359 174828501 -9460161 - AluJb SINE Alu -26 286 145 893 248 157 41 chr4 174828601 174829060 -9459602 - L2 LINE L2 -1156 2158 1647 205 308 68 15 chr4 174829064 174829197 -9459465 + L2 LINE L2 1965 2104 -1210 343 366 38 0 chr4 174829204 174829335 -9459327 - MER91C DNA MER1_type -3 137 2 1013 206 38 15 chr4 174829810 174830077 -9458585 + L1ME1 LINE L1 5831 6103 -63 1197 195 9 5 chr4 174830182 174830403 -9458259 - MER67A LTR ERV1 -320 223 2 373 139 50 194 chr4 174830414 174830594 -9458068 + L1MA9 LINE L1 6159 6312 0 930 182 6 12 chr4 174831014 174831184 -9457478 + AluJb SINE Alu 133 301 -11 1512 171 0 8 chr4 174831438 174831678 -9456984 - AluSq SINE Alu -75 238 1 1590 239 41 35 chr4 174832142 174832606 -9456056 + MLT1C LTR MaLR 1 467 0 237 108 0 0 chr4 174834133 174834170 -9454492 + (TA)n Simple_repeat Simple_repeat 1 37 0 245 32 0 0 chr4 174834464 174834495 -9454167 + MADE1 DNA Mariner 50 80 0 2076 126 0 0 chr4 174834757 174835043 -9453619 - AluSg SINE Alu -24 286 1 288 192 0 0 chr4 174835088 174835140 -9453522 + LTR30 LTR ERV1 1 52 -670 270 172 47 31 chr4 174835271 174835335 -9453327 + MER34 LTR ERV1 221 285 -257 613 118 82 18 chr4 174835375 174835485 -9453177 + MSTB LTR MaLR 1 117 -309 2109 143 31 31 chr4 174835485 174835843 -9452819 + THE1B LTR MaLR 1 358 -6 2736 85 8 0 chr4 174835872 174836247 -9452415 + THE1B-int LTR MaLR 5 382 -1198 433 267 15 37 chr4 174837336 174837471 -9451191 - MIR SINE MIR -111 151 20 444 320 99 5 chr4 174838008 174838230 -9450432 - MIR SINE MIR -6 256 14 587 240 88 16 chr4 174839129 174839321 -9449341 - L1ME3A LINE L1 -5 6165 5960 1363 103 0 0 chr4 174839461 174839636 -9449026 - AluSq SINE Alu -84 229 55 281 143 82 0 chr4 174839805 174839854 -9448808 - MER63 DNA MER1_type -380 682 4 214 313 38 38 chr4 174840024 174840104 -9448558 + L2 LINE L2 2993 3072 -200 1274 133 0 0 chr4 174840165 174840368 -9448294 + L1PB1 LINE L1 5949 6151 0 225 94 0 0 chr4 174840632 174840664 -9447998 + (TG)n Simple_repeat Simple_repeat 1 32 0 1112 121 278 9 chr4 174840690 174840913 -9447749 + LTR12 LTR ERV1 2 284 -430 288 204 48 78 chr4 174840914 174841017 -9447645 + LTR30 LTR ERV1 378 642 -80 621 100 0 0 chr4 174841017 174841107 -9447555 + LTR12 LTR ERV1 625 714 0 1619 175 57 27 chr4 174841179 174841550 -9447112 - L1MC3 LINE L1 -1 7784 7403 248 319 0 29 chr4 174842003 174842072 -9446590 - L2 LINE L2 -1 3312 3246 1630 172 3 47 chr4 174842960 174843280 -9445382 - AluSx SINE Alu 0 312 7 3499 126 41 0 chr4 174843881 174844445 -9444217 + L1MC1 LINE L1 5540 6126 -207 2616 37 0 0 chr4 174845972 174846272 -9442390 + AluY SINE Alu 1 300 -11 196 207 276 23 chr4 174846467 174846554 -9442108 + MER5A DNA MER1_type 4 112 -77 252 311 47 47 chr4 174846958 174847106 -9441556 + MIR SINE MIR 107 254 -8 1168 169 0 0 chr4 174847287 174847470 -9441192 - FRAM SINE Alu -1 175 1 1906 108 30 11 chr4 174847588 174847857 -9440805 - AluSg SINE Alu -36 274 1 5301 199 42 46 chr4 174847857 174849032 -9439630 - L1PBa LINE L1 -3368 2835 1656 2086 119 24 0 chr4 174849032 174849325 -9439337 + AluSx SINE Alu 1 300 -12 5301 199 42 46 chr4 174849325 174851690 -9436972 - L1PBa LINE L1 -4547 1656 1 1208 228 114 7 chr4 174851771 174852193 -9436469 - Charlie2b DNA MER1_type -576 2206 1820 854 319 143 3 chr4 174852266 174852623 -9436039 + LTR33 LTR ERVL 103 509 -12 270 276 77 64 chr4 174852583 174852739 -9435923 - Charlie2b DNA MER1_type -974 1808 1651 * 955 235 54 87 chr4 174852851 174853481 -9435181 + L1M4 LINE L1 3374 3982 -2164 1926 148 14 0 chr4 174853987 174854270 -9434392 + AluSx SINE Alu 8 294 -18 393 188 0 0 chr4 174854454 174854523 -9434139 + Tigger2 DNA MER2_type 1 69 -2649 * 2711 116 32 11 chr4 174854507 174854948 -9433714 + Tigger2 DNA MER2_type 2267 2716 -2 818 335 78 24 chr4 174855047 174855507 -9433155 + L2 LINE L2 2829 3313 0 292 368 42 6 chr4 174855506 174855672 -9432990 + L3 LINE CR1 953 1124 -453 * 276 342 135 32 chr4 174855715 174855996 -9432666 + L3 LINE CR1 1250 1559 -18 2292 115 0 0 chr4 174858124 174858436 -9430226 + AluSx SINE Alu 1 312 0 1244 215 63 11 chr4 174858686 174858956 -9429706 - AluJo SINE Alu -19 293 10 320 340 71 86 chr4 174858975 174859299 -9429363 - L2 LINE L2 -5 3267 2949 296 358 93 36 chr4 174859354 174859740 -9428922 - L2 LINE L2 -472 2842 2435 1710 161 7 25 chr4 174859767 174860052 -9428610 + AluJo SINE Alu 7 286 -26 292 272 123 9 chr4 174860075 174860189 -9428473 - MIR SINE MIR -4 258 132 38 22 0 0 chr4 174860272 174860317 -9428345 + AT_rich Low_complexity Low_complexity 1 45 0 731 272 105 50 chr4 174860587 174860988 -9427674 - L1ME3A LINE L1 -289 5881 5459 511 170 10 0 chr4 174861033 174861133 -9427529 - MER53 DNA DNA -88 101 1 575 269 16 12 chr4 174861133 174861476 -9427186 - L1ME3A LINE L1 -698 5466 5122 290 279 16 74 chr4 174861591 174861781 -9426881 + HAL1 LINE L1 1911 2089 -418 264 59 0 0 chr4 174861843 174861877 -9426785 + (CA)n Simple_repeat Simple_repeat 2 35 0 237 311 10 0 chr4 174861877 174861980 -9426682 + HAL1 LINE L1 2298 2401 -106 2308 136 11 3 chr4 174862312 174862672 -9425990 - THE1B LTR MaLR -1 363 1 2189 184 43 24 chr4 174862696 174863114 -9425548 - MSTB LTR MaLR 0 426 1 2136 98 0 37 chr4 174865188 174865509 -9423153 + AluSx SINE Alu 1 310 0 2123 113 3 16 chr4 174866017 174866326 -9422336 + AluSx SINE Alu 1 305 -7 326 260 135 10 chr4 174866965 174867069 -9421593 + L2 LINE L2 2687 2803 -511 2147 243 35 13 chr4 174867372 174868054 -9420608 + L1M4 LINE L1 4474 5170 -976 1474 192 45 0 chr4 174868176 174868463 -9420199 - MSTA LTR MaLR 0 428 129 839 116 0 0 chr4 174868724 174868845 -9419817 - MSTA LTR MaLR -307 121 1 457 174 22 0 chr4 174868912 174869004 -9419658 + L1MA10 LINE L1 6233 6326 -8 533 195 35 0 chr4 174869196 174869309 -9419353 + MER67C LTR ERV1 120 236 -474 991 193 109 5 chr4 174869313 174869505 -9419157 - MER21B LTR ERV1 -373 490 279 252 316 0 0 chr4 174869499 174869578 -9419084 + MER67B LTR ERV1 327 405 -256 * 1332 191 103 12 chr4 174869606 174869936 -9418726 + MER67C LTR ERV1 351 710 0 1862 158 23 0 chr4 174869965 174870269 -9418393 - AluJb SINE Alu -1 311 1 21 0 0 0 chr4 174870558 174870579 -9418083 + AT_rich Low_complexity Low_complexity 1 21 0 1347 161 111 120 chr4 174870961 174871377 -9417285 - MER47B DNA MER2_type 0 418 7 22 0 0 0 chr4 174871718 174871740 -9416922 + AT_rich Low_complexity Low_complexity 1 22 0 5833 115 36 8 chr4 174871831 174873694 -9414968 - L1PA15 LINE L1 -2 6163 4263 1320 187 18 25 chr4 174874159 174874442 -9414220 + L1MC2 LINE L1 5831 6111 -233 840 132 46 0 chr4 174874544 174874696 -9413966 + L1MC1 LINE L1 6093 6251 -82 314 217 38 38 chr4 174876526 174876683 -9411979 + (TATATG)n Simple_repeat Simple_repeat 2 158 0 604 349 105 25 chr4 174878423 174878870 -9409792 + L3 LINE CR1 1055 1537 -40 10005 183 29 20 chr4 174879711 174879922 -9408740 + L1PB3 LINE L1 2923 3131 -3023 1617 170 0 18 chr4 174879922 174880205 -9408457 + AluJb SINE Alu 1 278 -34 375 23 0 0 chr4 174880211 174880255 -9408407 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 10005 183 29 20 chr4 174880255 174880997 -9407665 + L1PB3 LINE L1 3135 3869 -2285 1290 164 180 0 chr4 174880997 174881085 -9407577 + AluJo SINE Alu 1 72 -240 474 49 0 0 chr4 174881085 174881146 -9407516 + (CTA)n Simple_repeat Simple_repeat 1 61 0 1290 164 180 0 chr4 174881146 174881301 -9407361 + AluJo SINE Alu 72 288 -24 10005 183 29 20 chr4 174881301 174883175 -9405487 + L1PB3 LINE L1 3869 5789 -365 266 73 24 0 chr4 174883175 174883216 -9405446 + (TA)n Simple_repeat Simple_repeat 1 42 0 10005 183 29 20 chr4 174883216 174883579 -9405083 + L1PB3 LINE L1 5789 6147 -7 388 205 264 12 chr4 174883592 174883997 -9404665 + Charlie2 DNA MER1_type 2295 2801 -61 563 295 52 16 chr4 174884304 174884497 -9404165 + MLT1J2 LTR MaLR 251 450 0 2359 39 3 3 chr4 174885192 174885526 -9403136 + AluY SINE Alu 1 334 0 1161 140 0 0 chr4 174885526 174885704 -9402958 + AluSg/x SINE Alu 126 303 -9 566 276 165 32 chr4 174886383 174886698 -9401964 + MLT1J2 LTR MaLR 57 413 -37 22 70 0 0 chr4 174886847 174886890 -9401772 + AT_rich Low_complexity Low_complexity 1 43 0 184 167 0 48 chr4 174886917 174886959 -9401703 - L3 LINE CR1 -737 840 801 2037 138 0 0 chr4 174887096 174887378 -9401284 - AluSx SINE Alu -30 282 1 2240 109 0 22 chr4 174887572 174887883 -9400779 - AluSp SINE Alu -6 307 4 2259 106 0 0 chr4 174888824 174889126 -9399536 - AluSx SINE Alu -10 302 1 248 290 30 10 chr4 174890125 174890225 -9398437 + L1MC2 LINE L1 5333 5434 -808 269 267 0 27 chr4 174890271 174890346 -9398316 + L2 LINE L2 3203 3275 -38 338 333 90 32 chr4 174890496 174890685 -9397977 + L1MC2 LINE L1 5620 5819 -302 24 32 0 0 chr4 174890799 174890830 -9397832 + AT_rich Low_complexity Low_complexity 1 31 0 204 250 0 25 chr4 174892472 174892552 -9396110 + (TAA)n Simple_repeat Simple_repeat 2 79 0 294 280 70 20 chr4 174893111 174893211 -9395451 - MLT1L LTR MaLR 0 615 511 445 266 31 102 chr4 174893237 174893463 -9395199 + MIR SINE MIR 50 259 -3 445 259 7 52 chr4 174893797 174893932 -9394730 + MIR SINE MIR 36 164 -98 21 0 0 0 chr4 174896154 174896175 -9392487 + AT_rich Low_complexity Low_complexity 1 21 0 5626 54 10 4 chr4 174897600 174898299 -9390363 + SVA Other Other 681 1383 -3 736 233 149 98 chr4 174898399 174898941 -9389721 - LTR50 LTR ERVL 0 795 226 649 299 164 33 chr4 174899264 174899893 -9388769 + L1ME4a LINE L1 5402 6112 -9 629 208 71 6 chr4 174900688 174900741 -9387921 + L1MC2 LINE L1 5862 5910 -434 2671 115 55 14 chr4 174900741 174901175 -9387487 - LTR47A LTR ERVL 0 452 1 629 208 71 6 chr4 174901175 174901289 -9387373 + L1MC2 LINE L1 5910 6040 -304 1951 143 40 57 chr4 174901289 174901606 -9387056 - THE1B LTR MaLR 0 364 52 2060 208 72 8 chr4 174901606 174902081 -9386581 + LTR22 LTR ERVK 1 505 -4 1951 143 40 57 chr4 174902081 174902133 -9386529 - THE1B LTR MaLR -312 52 1 1288 206 18 18 chr4 174902136 174902418 -9386244 + L1MC2 LINE L1 6039 6320 -24 234 324 96 29 chr4 174903022 174903158 -9385504 - L2 LINE L2 -20 3293 3149 1666 112 25 40 chr4 174904065 174904342 -9384320 - THE1B LTR MaLR 0 364 92 8800 131 40 7 chr4 174904352 174905705 -9382957 - THE1B-int LTR MaLR -182 1398 1 1781 163 33 36 chr4 174905705 174906066 -9382596 - THE1B LTR MaLR 0 364 5 1856 136 67 33 chr4 174906199 174906560 -9382102 + THE1C LTR MaLR 3 375 0 1808 140 77 230 chr4 174907669 174908307 -9380355 - L1MC1 LINE L1 0 6333 5858 2076 124 34 0 chr4 174908307 174908605 -9380057 - AluSc SINE Alu -1 308 1 1808 140 77 230 chr4 174908605 174908812 -9379850 - L1MC1 LINE L1 -475 5858 5621 1240 151 98 0 chr4 174908814 174909059 -9379603 - L1MCa LINE L1 -4215 2211 1943 1636 115 0 0 chr4 174909162 174909405 -9379257 - MER4A-int LTR ERV1 -1200 3815 3573 2158 137 0 0 chr4 174909405 174909705 -9378957 + AluSq SINE Alu 1 300 -13 478 129 0 0 chr4 174909717 174909787 -9378875 + MLT2A1 LTR ERVL 1 70 -374 * 810 102 0 88 chr4 174909784 174909931 -9378731 + MLT2A1 LTR ERVL 311 444 0 7141 108 37 16 chr4 174909931 174911120 -9377542 - MER4A-int LTR ERV1 -1548 5050 3837 1410 175 38 51 chr4 174911114 174911178 -9377484 - MER4A-int LTR ERV1 -2912 3686 3623 * 1899 162 3 13 chr4 174911178 174911492 -9377170 + AluSx SINE Alu 1 311 -1 1410 175 38 51 chr4 174911492 174911822 -9376840 - MER4A-int LTR ERV1 -2975 3623 3297 1306 58 19 10 chr4 174911844 174912050 -9376612 - PABL_A-int LTR ERV1 -2946 2069 1862 1329 139 9 5 chr4 174912050 174912266 -9376396 + LTR8 LTR ERV1 1 217 -474 10763 124 94 77 chr4 174912266 174914743 -9373919 - MER4A-int LTR ERV1 -4077 2521 1 1963 112 6 19 chr4 174914746 174915095 -9373567 - MER4A LTR ERV1 0 664 262 700 91 0 10 chr4 174915095 174915194 -9373468 - MER4A LTR ERV1 -566 98 1 222 320 21 10 chr4 174915542 174915639 -9373023 - L2 LINE L2 -1001 2313 2216 2470 74 0 0 chr4 174915974 174916273 -9372389 - AluSc SINE Alu -10 299 1 269 292 115 0 chr4 174916441 174916537 -9372125 - L2 LINE L2 -19 3294 3188 1638 171 9 38 chr4 174917314 174917629 -9371033 + AluJo SINE Alu 1 306 -6 2005 190 92 5 chr4 174917820 174918242 -9370420 - LOR1b LTR ERV1 -2 459 1 1144 209 39 33 chr4 174918927 174919233 -9369429 + L1ME LINE L1 4891 5198 -948 1702 231 42 11 chr4 174919265 174919736 -9368926 + L1ME LINE L1 5333 5818 -346 1360 226 94 129 chr4 174920883 174921433 -9367229 + MLT1E LTR MaLR 12 593 0 395 238 10 10 chr4 174924019 174924120 -9364542 + MLT1K LTR MaLR 486 586 -2 281 87 0 22 chr4 174924135 174924181 -9364481 - MADE1 DNA Mariner -2 78 34 665 229 7 0 chr4 174924272 174924416 -9364246 + L1MA9 LINE L1 4813 4957 -1189 572 114 0 0 chr4 174924418 174924497 -9364165 + AluSg SINE Alu 4 82 -228 5759 153 23 21 chr4 174924497 174925853 -9362809 + L1MA9 LINE L1 4948 6312 0 23 54 0 0 chr4 174927354 174927391 -9361271 + AT_rich Low_complexity Low_complexity 1 37 0 1708 181 3 28 chr4 174928262 174928582 -9360080 + AluJo SINE Alu 1 312 0 269 135 19 0 chr4 174928582 174928634 -9360028 + (TA)n Simple_repeat Simple_repeat 1 53 0 379 118 53 20 chr4 174928743 174928895 -9359767 + (TA)n Simple_repeat Simple_repeat 2 158 0 2092 112 3 16 chr4 174929347 174929659 -9359003 + AluSg SINE Alu 1 308 -2 1184 218 44 57 chr4 174929784 174930151 -9358511 + MER31-int LTR ERV1 3346 3707 -1229 304 230 48 48 chr4 174930167 174930293 -9358369 + MIR SINE MIR 137 262 0 709 197 7 0 chr4 174930688 174930830 -9357832 - L1PA16 LINE L1 0 6166 6024 180 0 0 0 chr4 174931885 174931905 -9356757 + (A)n Simple_repeat Simple_repeat 1 20 0 1796 148 50 0 chr4 174935272 174935555 -9353107 - AluSx SINE Alu -15 297 1 610 133 0 17 chr4 174936211 174936331 -9352331 + (TA)n Simple_repeat Simple_repeat 1 118 0 282 56 0 0 chr4 174936335 174936371 -9352291 + (TG)n Simple_repeat Simple_repeat 1 36 0 675 255 59 10 chr4 174936373 174936571 -9352091 + MLT1E2 LTR MaLR 297 526 -100 667 203 14 7 chr4 174936571 174936719 -9351943 + MER34 LTR ERV1 4 152 -390 379 316 23 0 chr4 174937480 174937651 -9351011 - L1M4 LINE L1 -2685 3461 3287 1857 159 62 45 chr4 174937651 174937992 -9350670 - MSTA LTR MaLR 0 428 77 2327 116 62 0 chr4 174937992 174938347 -9350315 - MER51B LTR ERV1 0 377 1 1857 159 62 45 chr4 174938347 174938426 -9350236 - MSTA LTR MaLR -351 77 1 1587 191 7 7 chr4 174938456 174938739 -9349923 - AluJo SINE Alu -12 300 18 591 338 46 29 chr4 174938760 174939216 -9349446 - L1MEc LINE L1 -5828 568 105 22 56 0 0 chr4 174940087 174940123 -9348539 + AT_rich Low_complexity Low_complexity 1 36 0 329 206 6 42 chr4 174940509 174940674 -9347988 + GA-rich Low_complexity Low_complexity 2 160 0 286 58 92 11 chr4 174940956 174941043 -9347619 + (TATAA)n Simple_repeat Simple_repeat 4 97 0 2850 71 3 0 chr4 174941295 174941649 -9347013 + THE1A LTR MaLR 1 355 0 7145 104 26 3 chr4 174941649 174942652 -9346010 + THE1A-int LTR MaLR 1 1026 -554 2282 100 7 0 chr4 174942655 174942965 -9345697 + THE1A-int LTR MaLR 1269 1580 0 1583 84 40 0 chr4 174942965 174943191 -9345471 + THE1A LTR MaLR 1 235 -120 2552 131 29 71 chr4 174943291 174944006 -9344656 - L1MCa LINE L1 -4553 1873 1107 414 282 64 79 chr4 174944261 174944392 -9344270 + L2 LINE L2 2486 2613 -701 2067 61 0 0 chr4 174944392 174944637 -9344025 - AluY SINE Alu -66 245 1 414 282 64 79 chr4 174944637 174944771 -9343891 + L2 LINE L2 2613 2747 -567 321 301 102 6 chr4 174945288 174945420 -9343242 + MIR SINE MIR 14 169 -93 207 0 0 0 chr4 174945420 174945443 -9343219 + (TAA)n Simple_repeat Simple_repeat 3 25 0 321 301 102 6 chr4 174945443 174945486 -9343176 + MIR SINE MIR 169 206 -56 575 330 39 17 chr4 174945888 174946118 -9342544 - MIR SINE MIR -16 246 12 236 229 71 0 chr4 174948590 174948660 -9340002 - L1MA10 LINE L1 -3 6331 6257 888 222 4 30 chr4 174948664 174948894 -9339768 + AluJo SINE Alu 84 307 -5 765 262 42 35 chr4 174948897 174949299 -9339363 - L1ME1 LINE L1 -51 6113 5706 418 272 86 13 chr4 174949429 174949661 -9339001 - L1MC5 LINE L1 -61 7900 7652 523 252 157 76 chr4 174949702 174949905 -9338757 + L1ME LINE L1 5350 5588 -533 1547 179 13 29 chr4 174949905 174950217 -9338445 - AluJo SINE Alu -4 308 2 523 252 157 76 chr4 174950217 174950306 -9338356 + L1ME LINE L1 5588 5668 -453 1763 173 16 19 chr4 174950730 174951099 -9337563 - L1MA6 LINE L1 -5 6295 5928 322 332 137 26 chr4 174951148 174951374 -9337288 - L3 LINE CR1 -1123 454 204 3015 178 48 17 chr4 174951748 174952334 -9336328 + LTR31 LTR ERV1 1 604 -15 402 311 151 23 chr4 174952559 174952858 -9335804 + L2 LINE L2 2969 3305 -8 548 343 0 5 chr4 174953384 174953585 -9335077 + MIR SINE MIR 62 261 -1 214 326 35 12 chr4 174953832 174953918 -9334744 + MIR3 SINE MIR 72 159 -49 382 307 9 0 chr4 174954797 174954911 -9333751 + CT-rich Low_complexity Low_complexity 2 116 0 2139 123 8 75 chr4 174955856 174956245 -9332417 + THE1B LTR MaLR 1 363 -1 389 354 70 42 chr4 174956632 174957234 -9331428 + L2 LINE L2 2642 3268 -4 202 281 53 0 chr4 174957435 174957492 -9331170 - L3 LINE CR1 -175 1402 1343 2076 162 16 34 chr4 174957633 174958021 -9330641 + MLT1B LTR MaLR 3 383 -7 232 188 0 21 chr4 174958156 174958204 -9330458 - L2 LINE L2 -16 3297 3251 316 245 31 20 chr4 174958223 174958321 -9330341 - MIR SINE MIR -116 146 48 371 321 89 18 chr4 174958347 174958515 -9330147 + MIR SINE MIR 21 200 -62 389 311 39 17 chr4 174959026 174959206 -9329456 + MIR SINE MIR 30 213 -49 * 1169 219 8 8 chr4 174959205 174959442 -9329220 - MIR SINE MIR 0 262 26 1184 135 193 11 chr4 174960320 174960594 -9328068 - MER46A DNA MER2_type 0 236 38 305 188 25 50 chr4 174960925 174961005 -9327657 + MER46A DNA MER2_type 68 145 -91 2035 145 9 79 chr4 174961205 174961661 -9327001 + L1MA5 LINE L1 5872 6295 -5 471 275 86 25 chr4 174961993 174962215 -9326447 - MIR SINE MIR -27 235 2 866 202 6 28 chr4 174963079 174963257 -9325405 + AluJb SINE Alu 136 309 -3 180 77 0 0 chr4 174965271 174965297 -9323365 + (TAA)n Simple_repeat Simple_repeat 2 27 0 25 0 0 0 chr4 174965676 174965701 -9322961 + AT_rich Low_complexity Low_complexity 1 25 0 603 48 0 12 chr4 174966724 174966808 -9321854 + AluY SINE Alu 1 83 -228 3053 78 22 20 chr4 174966810 174967257 -9321405 - LTR7 LTR ERV1 -2 448 1 1833 51 0 0 chr4 174967257 174967473 -9321189 + AluY SINE Alu 79 294 -17 370 230 80 20 chr4 174968369 174968469 -9320193 - MER5A DNA MER1_type -80 109 4 1431 199 79 3 chr4 174968962 174969279 -9319383 + MER58B DNA MER1_type 1 341 0 203 371 19 19 chr4 174969709 174969814 -9318848 + L2 LINE L2 3175 3279 -34 4982 173 39 77 chr4 174970036 174972377 -9316285 - L1PA15 LINE L1 -2 6163 3914 243 339 35 0 chr4 174972641 174972812 -9315850 - L1M4 LINE L1 -2314 3832 3656 22 35 0 0 chr4 174972981 174973010 -9315652 + AT_rich Low_complexity Low_complexity 1 29 0 222 157 14 71 chr4 174973264 174973334 -9315328 + T-rich Low_complexity Low_complexity 5 70 0 27 29 0 0 chr4 174974477 174974511 -9314151 + AT_rich Low_complexity Low_complexity 1 34 0 2548 55 0 7 chr4 174974905 174975215 -9313447 + AluY SINE Alu 1 308 -3 1070 79 0 0 chr4 174975431 174975570 -9313092 + MER85 DNA T2_type 1 139 0 852 75 0 0 chr4 174975910 174976017 -9312645 + AluSq/x SINE Alu 1 107 -206 22 35 0 0 chr4 174976262 174976291 -9312371 + AT_rich Low_complexity Low_complexity 1 29 0 195 42 0 0 chr4 174976916 174976940 -9311722 + (T)n Simple_repeat Simple_repeat 1 24 0 228 295 63 11 chr4 174977141 174977236 -9311426 - MLT1L LTR MaLR -117 498 399 479 310 37 42 chr4 174977363 174977579 -9311083 - MLT1L LTR MaLR -364 251 37 27 29 0 0 chr4 174978375 174978409 -9310253 + AT_rich Low_complexity Low_complexity 1 34 0 687 269 74 51 chr4 174978671 174978983 -9309679 - MLT1J1 LTR MaLR -127 319 1 236 227 82 62 chr4 174979451 174979548 -9309114 + L3b LINE CR1 1419 1517 -66 893 255 44 20 chr4 174980138 174980389 -9308273 - MIR SINE MIR 0 262 6 1896 115 0 22 chr4 174981996 174982306 -9306356 - AluSx SINE Alu 0 323 20 376 353 62 37 chr4 174983853 174984176 -9304486 - L2 LINE L2 -383 2931 2601 1863 215 25 18 chr4 174984450 174985044 -9303618 + MER82 DNA MER2_type 1 652 -1 21 0 0 0 chr4 174985348 174985369 -9303293 + AT_rich Low_complexity Low_complexity 1 21 0 336 262 136 0 chr4 174986193 174986296 -9302366 + MIR SINE MIR 35 151 -111 409 307 32 106 chr4 174989243 174989526 -9299136 - MLT1K LTR MaLR -318 270 9 950 178 7 0 chr4 174989753 174989905 -9298757 - AluJb SINE Alu -40 272 120 2003 116 80 59 chr4 174989983 174990422 -9298240 - LTR7 LTR ERV1 -2 448 1 1742 151 9 54 chr4 174990539 174990856 -9297806 + AluSq SINE Alu 1 303 -10 804 257 165 45 chr4 174990946 174991413 -9297249 - LTR33A LTR ERVL 0 523 1 2090 107 0 50 chr4 174991493 174991812 -9296850 - AluSq SINE Alu -10 303 1 533 301 65 33 chr4 175041947 175042223 -9246439 - L1ME LINE L1 -4656 1605 1321 * 674 226 78 51 chr4 175042221 175042584 -9246078 - L1ME LINE L1 -4962 1118 750 21 57 0 0 chr4 175042636 175042671 -9245991 + AT_rich Low_complexity Low_complexity 1 35 0 1544 256 77 62 chr4 175042734 175043450 -9245212 - L1ME LINE L1 -5338 732 6 846 312 70 14 chr4 175043655 175044068 -9244594 - L1M3a LINE L1 -5503 452 17 1573 210 58 17 chr4 175044084 175044550 -9244112 - L1M4 LINE L1 -1654 4492 4008 485 138 80 72 chr4 175044522 175044660 -9244002 - L1MC/D LINE L1 -850 5494 5356 * 6250 31 1 10 chr4 175044660 175045375 -9243287 - SVA Other Other -4 1382 674 21 0 0 0 chr4 175045631 175045652 -9243010 + AT_rich Low_complexity Low_complexity 1 21 0 388 277 68 92 chr4 175046292 175046541 -9242121 - HsTC2 DNA Tc2 -1008 890 648 189 129 0 0 chr4 175046559 175046590 -9242072 - L2 LINE L2 -3 3310 3280 * 707 171 27 41 chr4 175046588 175046734 -9241928 + MIR SINE MIR 65 208 -54 234 264 56 14 chr4 175046873 175046945 -9241717 - HsTC2c DNA Tc2 -88 641 567 329 183 108 32 chr4 175047705 175047798 -9240864 + FRAM SINE Alu 67 166 0 2148 90 0 55 chr4 175048487 175048798 -9239864 + AluSx SINE Alu 1 294 -18 295 336 30 8 chr4 175048816 175048947 -9239715 - L2 LINE L2 -12 3301 3168 195 347 56 21 chr4 175049114 175049258 -9239404 - L2 LINE L2 -1673 1641 1493 21 57 0 0 chr4 175050514 175050549 -9238113 + AT_rich Low_complexity Low_complexity 1 35 0 1555 279 62 46 chr4 175050612 175051328 -9237334 - L1ME LINE L1 -5338 732 6 200 234 0 21 chr4 175051518 175051565 -9237097 + A-rich Low_complexity Low_complexity 4 49 0 231 200 80 53 chr4 175051836 175051911 -9236751 + L2 LINE L2 3229 3305 -8 268 216 59 0 chr4 175052551 175052602 -9236060 - L2 LINE L2 -11 3261 3208 21 36 0 0 chr4 175052966 175052994 -9235668 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr4 175053131 175053160 -9235502 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr4 175055595 175055620 -9233042 + AT_rich Low_complexity Low_complexity 1 25 0 356 328 102 77 chr4 175056304 175056834 -9231828 - L2 LINE L2 -561 2753 2211 217 254 68 0 chr4 175056876 175056935 -9231727 + L2 LINE L2 3251 3313 0 337 153 61 71 chr4 175057724 175057822 -9230840 + MER94 DNA DNA 3 99 -35 314 308 54 15 chr4 175058443 175058573 -9230089 + L2 LINE L2 3178 3312 -1 675 347 16 16 chr4 175058578 175058889 -9229773 - L2 LINE L2 -453 2861 2551 1792 147 0 24 chr4 175058893 175059186 -9229476 + AluJo SINE Alu 6 291 -21 234 0 0 0 chr4 175059204 175059230 -9229432 + (GA)n Simple_repeat Simple_repeat 1 26 0 282 95 0 0 chr4 175059233 175059275 -9229387 + (GGGGA)n Simple_repeat Simple_repeat 4 45 0 327 130 174 11 chr4 175059416 175059510 -9229152 - L1MB7 LINE L1 -5 6161 6045 2162 224 28 28 chr4 175059541 175060045 -9228617 - LTR31 LTR ERV1 -15 604 101 2685 218 88 11 chr4 175060168 175060670 -9227992 - L1ME1 LINE L1 -185 6050 5455 2369 186 65 4 chr4 175060670 175061159 -9227503 + LTR53 LTR ERVL 1 519 0 2685 218 88 11 chr4 175061159 175061439 -9227223 - L1ME1 LINE L1 -780 5455 5198 1698 201 0 3 chr4 175061462 175061760 -9226902 + AluJo SINE Alu 1 297 -15 2009 240 77 72 chr4 175061760 175062303 -9226359 - L1ME1 LINE L1 -3589 2626 2087 318 67 0 0 chr4 175062303 175062348 -9226314 + (TG)n Simple_repeat Simple_repeat 2 46 0 2009 240 77 72 chr4 175062348 175063057 -9225605 - L1ME1 LINE L1 -4128 2087 1418 236 310 35 0 chr4 175063062 175063175 -9225487 + L1M4 LINE L1 4228 4344 -1802 325 239 54 11 chr4 175063187 175063279 -9225383 + L1MC4 LINE L1 6610 6705 -1337 462 264 96 84 chr4 175063323 175063917 -9224745 + L1M4 LINE L1 4419 5019 -1127 242 250 33 0 chr4 175063967 175064027 -9224635 + MER5A DNA MER1_type 128 189 0 23 33 0 0 chr4 175064103 175064133 -9224529 + AT_rich Low_complexity Low_complexity 1 30 0 284 214 24 24 chr4 175064182 175064266 -9224396 - MLT1K LTR MaLR -27 561 478 225 173 80 107 chr4 175064619 175064694 -9223968 + MLT1K LTR MaLR 439 511 -77 1483 217 3 17 chr4 175065031 175065331 -9223331 - AluJo SINE Alu -6 306 11 267 54 0 0 chr4 175065414 175065451 -9223211 + (CA)n Simple_repeat Simple_repeat 2 38 0 280 256 116 43 chr4 175066199 175066294 -9222368 - L1ME4a LINE L1 -103 6018 5931 2343 100 0 0 chr4 175066294 175066593 -9222069 + AluSx SINE Alu 1 299 -13 280 256 116 43 chr4 175066593 175066704 -9221958 - L1ME4a LINE L1 -190 5931 5797 188 88 176 0 chr4 175066715 175066749 -9221913 - L2 LINE L2 -9 3263 3224 228 211 254 0 chr4 175068929 175069000 -9219662 - L2 LINE L2 -2 3270 3182 261 139 0 0 chr4 175069019 175069062 -9219600 + (CA)n Simple_repeat Simple_repeat 2 44 0 597 224 0 0 chr4 175073667 175073783 -9214879 + FLAM_C SINE Alu 1 116 -27 7528 221 44 56 chr4 175074508 175074557 -9214105 + L1ME LINE L1 906 954 -5428 195 42 0 0 chr4 175074557 175074581 -9214081 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 7528 221 44 56 chr4 175074581 175075282 -9213380 + L1ME LINE L1 954 1662 -4720 1891 159 13 3 chr4 175075282 175075591 -9213071 + AluJb SINE Alu 1 312 0 7528 221 44 56 chr4 175075591 175077220 -9211442 + L1ME LINE L1 1662 3292 -3090 2036 101 0 63 chr4 175077220 175077536 -9211126 + AluSc SINE Alu 1 296 -13 7528 221 44 56 chr4 175077536 175078750 -9209912 + L1ME LINE L1 3292 4519 -1863 2251 184 37 19 chr4 175078753 175079268 -9209394 + L1MA10 LINE L1 5810 6333 -1 347 299 27 7 chr4 175080422 175080569 -9208093 + L1ME LINE L1 5779 5928 -478 244 319 37 15 chr4 175081414 175081549 -9207113 - L2 LINE L2 -824 2490 2353 632 205 0 8 chr4 175082632 175082754 -9205908 - FLAM_A SINE Alu -12 121 1 186 290 215 21 chr4 175083815 175083908 -9204754 + L2 LINE L2 3201 3311 -2 1930 123 3 46 chr4 175084101 175084427 -9204235 + AluSq SINE Alu 1 312 -1 23 0 0 0 chr4 175084694 175084717 -9203945 + AT_rich Low_complexity Low_complexity 1 23 0 322 268 101 36 chr4 175089138 175089276 -9199386 - MIR3 SINE MIR -31 177 31 252 0 0 0 chr4 175089788 175089816 -9198846 + (CA)n Simple_repeat Simple_repeat 2 29 0 270 56 0 0 chr4 175089980 175090016 -9198646 + (TC)n Simple_repeat Simple_repeat 2 37 0 180 0 0 0 chr4 175090216 175090236 -9198426 + (A)n Simple_repeat Simple_repeat 1 20 0 245 311 74 22 chr4 175090426 175090561 -9198101 + L1ME3A LINE L1 6016 6157 -13 320 339 23 39 chr4 175091469 175091599 -9197063 - L2 LINE L2 -25 3288 3161 21 0 0 0 chr4 175091998 175092019 -9196643 + AT_rich Low_complexity Low_complexity 1 21 0 328 342 33 33 chr4 175092507 175092747 -9195915 + HsTC2 DNA Tc2 477 716 -1182 261 264 0 0 chr4 175093008 175093061 -9195601 - MER5A DNA MER1_type -92 97 45 510 315 41 20 chr4 175093172 175093369 -9195293 + L2 LINE L2 2538 2738 -576 285 29 0 0 chr4 175093426 175093460 -9195202 + (CA)n Simple_repeat Simple_repeat 1 34 0 182 330 179 9 chr4 175093502 175093608 -9195054 + L2 LINE L2 2914 3037 -235 21 0 0 0 chr4 175093829 175093850 -9194812 + AT_rich Low_complexity Low_complexity 1 21 0 1489 185 10 13 chr4 175095037 175095339 -9193323 + AluSx SINE Alu 1 301 -11 21 36 0 0 chr4 175095520 175095548 -9193114 + AT_rich Low_complexity Low_complexity 1 28 0 1783 112 4 0 chr4 175095825 175096066 -9192596 + AluSp SINE Alu 42 283 -30 25 65 0 0 chr4 175096815 175096861 -9191801 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr4 175097241 175097263 -9191399 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr4 175098233 175098257 -9190405 + AT_rich Low_complexity Low_complexity 1 24 0 1861 33 0 0 chr4 175098279 175098494 -9190168 - AluY SINE Alu -3 308 94 346 362 75 42 chr4 175100174 175100630 -9188032 + L2 LINE L2 2282 2752 -562 444 268 64 18 chr4 175100809 175101043 -9187619 + MER90 LTR ERV1 5 289 -325 310 193 102 23 chr4 175101071 175101159 -9187503 + MER90 LTR ERV1 365 459 -155 42 0 0 0 chr4 175102656 175102698 -9185964 + AT_rich Low_complexity Low_complexity 1 42 0 26 74 0 0 chr4 175103269 175103323 -9185339 + AT_rich Low_complexity Low_complexity 1 54 0 24 0 0 0 chr4 175104055 175104079 -9184583 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr4 175104182 175104205 -9184457 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr4 175104467 175104502 -9184160 + AT_rich Low_complexity Low_complexity 1 35 0 205 171 0 0 chr4 175105722 175105757 -9182905 + (TATG)n Simple_repeat Simple_repeat 4 38 0 391 404 25 4 chr4 175105910 175106150 -9182512 - L2 LINE L2 -221 3051 2807 1082 205 39 77 chr4 175107194 175107408 -9181254 - MER33 DNA MER1_type -2261 324 126 745 230 6 0 chr4 175107408 175107569 -9181093 + FRAM SINE Alu 1 162 -4 1082 205 39 77 chr4 175107569 175107691 -9180971 - MER33 DNA MER1_type -2459 126 1 410 266 49 110 chr4 175107833 175108213 -9180449 - L1MEd LINE L1 -4572 1738 1336 1783 124 0 64 chr4 175108213 175108540 -9180122 - AluSx SINE Alu 0 312 5 410 266 49 110 chr4 175108540 175109014 -9179648 - L1MEd LINE L1 -4974 1336 904 1699 131 3 92 chr4 175109614 175109949 -9178713 + AluJo SINE Alu 3 307 -5 200 256 45 120 chr4 175110076 175110209 -9178453 - L2 LINE L2 0 3313 3191 790 256 67 17 chr4 175110394 175110632 -9178030 + MIR SINE MIR 13 262 0 27 0 0 0 chr4 175111536 175111563 -9177099 + AT_rich Low_complexity Low_complexity 1 27 0 314 281 253 14 chr4 175112484 175112630 -9176032 + MIR SINE MIR 17 197 -65 281 347 89 16 chr4 175113068 175113192 -9175470 + L2 LINE L2 3132 3264 -8 6434 159 6 0 chr4 175113580 175115501 -9173161 - L1PA13 LINE L1 -1 6162 4243 28 71 0 0 chr4 175115553 175115609 -9173053 + AT_rich Low_complexity Low_complexity 1 56 0 430 204 234 18 chr4 175115631 175115798 -9172864 + L1MC5 LINE L1 7662 7864 -97 220 331 94 12 chr4 175116397 175116557 -9172105 - L2 LINE L2 -10 3303 3131 2039 131 0 0 chr4 175116755 175117038 -9171624 - AluSx SINE Alu -23 289 7 26 0 0 0 chr4 175117228 175117254 -9171408 + AT_rich Low_complexity Low_complexity 1 26 0 241 248 119 50 chr4 175118915 175119016 -9169646 + MIR SINE MIR 37 144 -64 2112 91 10 14 chr4 175119208 175119504 -9169158 + AluSc SINE Alu 1 295 -14 195 308 39 13 chr4 175120619 175120697 -9167965 - MIR SINE MIR -64 198 119 529 242 63 37 chr4 175122205 175122395 -9166267 - L2 LINE L2 0 3313 3119 814 297 88 86 chr4 175123727 175123813 -9164849 + HAL1 LINE L1 8 92 -2415 2752 10 0 0 chr4 175123813 175124117 -9164545 + AluYa5 SINE Alu 1 304 -7 814 297 88 86 chr4 175124117 175124602 -9164060 + HAL1 LINE L1 92 584 -1923 306 0 0 0 chr4 175124602 175124636 -9164026 + (CA)n Simple_repeat Simple_repeat 2 35 0 814 297 88 86 chr4 175124636 175125090 -9163572 + HAL1 LINE L1 584 1036 -1471 2095 256 32 6 chr4 175125121 175125753 -9162909 + L1M4 LINE L1 2183 2830 -3316 1018 275 130 15 chr4 175125759 175126235 -9162427 + HAL1 LINE L1 1080 1610 -897 718 205 47 16 chr4 175126250 175126440 -9162222 + L1M4 LINE L1 3803 3998 -2148 370 162 15 0 chr4 175126443 175126530 -9162132 + L1M LINE L1 5273 5364 -802 3561 97 36 14 chr4 175126530 175127109 -9161553 + SVA Other Other 277 868 -518 567 123 75 19 chr4 175130759 175130865 -9157797 - MLT1F1 LTR MaLR -3 564 453 24 53 0 0 chr4 175131299 175131337 -9157325 + AT_rich Low_complexity Low_complexity 1 38 0 1380 201 32 14 chr4 175131493 175131771 -9156891 - AluJo SINE Alu -23 289 7 4654 195 45 27 chr4 175132133 175134141 -9154521 - L1MB3 LINE L1 -1 6182 4138 460 324 50 6 chr4 175134141 175134320 -9154342 - MIR3 SINE MIR -6 202 16 320 310 90 7 chr4 175136232 175136377 -9152285 - MIR SINE MIR -56 206 50 382 123 0 0 chr4 175136549 175136614 -9152048 + AluSc SINE Alu 235 299 0 29 0 0 0 chr4 175136618 175136647 -9152015 + AT_rich Low_complexity Low_complexity 1 29 0 2160 103 0 0 chr4 175136663 175136944 -9151718 + AluSg SINE Alu 8 288 -22 284 154 17 14 chr4 175137547 175137617 -9151045 - L1ME1 LINE L1 0 6184 6107 1287 206 74 13 chr4 175137666 175137977 -9150685 - L1MD2 LINE L1 -22 6337 6008 1252 382 20 13 chr4 175137984 175138437 -9150225 - L1M4 LINE L1 -743 5403 4948 345 172 31 16 chr4 175138474 175138538 -9150124 - L2 LINE L2 -1 3271 3207 204 278 56 14 chr4 175138867 175138939 -9149723 - MIR SINE MIR -78 184 110 356 319 0 25 chr4 175139174 175139293 -9149369 + MIR SINE MIR 16 131 -131 2460 214 86 68 chr4 175139430 175139900 -9148762 - L1MC4 LINE L1 -25 8017 7557 1470 194 54 4 chr4 175139900 175140179 -9148483 - AluJo SINE Alu -19 293 1 2460 214 86 68 chr4 175140179 175140684 -9147978 - L1MC4 LINE L1 -485 7557 7024 1063 132 83 78 chr4 175140799 175141003 -9147659 - MER2 DNA MER2_type -139 206 2 429 192 96 21 chr4 175141003 175141117 -9147545 - L1MC4 LINE L1 -813 7024 6854 29 60 0 0 chr4 175141308 175141358 -9147304 + AT_rich Low_complexity Low_complexity 1 50 0 317 255 29 39 chr4 175141713 175141815 -9146847 - MIR SINE MIR -58 204 104 352 300 97 70 chr4 175141875 175142132 -9146530 - HAL1 LINE L1 -2222 285 22 1883 78 12 4 chr4 175142320 175142577 -9146085 + AluSq SINE Alu 40 298 -15 1991 113 24 0 chr4 175143501 175143794 -9144868 - AluSx SINE Alu -12 300 1 2721 202 60 22 chr4 175144173 175144462 -9144200 - MER82 DNA MER2_type 0 653 376 2220 45 3 18 chr4 175144462 175144777 -9143885 + AluY SINE Alu 1 311 0 2721 202 60 22 chr4 175144777 175145115 -9143547 - MER82 DNA MER2_type -277 376 1 1716 159 19 35 chr4 175145618 175145932 -9142730 - AluJo SINE Alu -3 309 1 616 301 72 48 chr4 175146312 175146561 -9142101 - MIR SINE MIR 0 262 8 25 0 0 0 chr4 175146931 175146956 -9141706 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr4 175147251 175147275 -9141387 + AT_rich Low_complexity Low_complexity 1 24 0 2696 136 54 147 chr4 175147513 175148393 -9140269 - L1MC1 LINE L1 -363 5970 5175 217 120 0 80 chr4 175148917 175148967 -9139695 + (TTTTTG)n Simple_repeat Simple_repeat 5 50 0 623 287 153 5 chr4 175152703 175152919 -9135743 + MIR SINE MIR 15 262 0 23 54 0 0 chr4 175153833 175153870 -9134792 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr4 175154364 175154387 -9134275 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 175154975 175154998 -9133664 + AT_rich Low_complexity Low_complexity 1 23 0 1290 202 0 13 chr4 175155000 175155238 -9133424 + AluJb SINE Alu 1 235 -77 21 0 0 0 chr4 175156849 175156870 -9131792 + AT_rich Low_complexity Low_complexity 1 21 0 31 58 0 0 chr4 175157490 175157542 -9131120 + AT_rich Low_complexity Low_complexity 1 52 0 180 0 0 0 chr4 175158273 175158293 -9130369 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 336 136 68 17 chr4 175158940 175158999 -9129663 - MLT1L LTR MaLR 0 615 554 656 256 101 61 chr4 175159079 175159376 -9129286 - MLT1L LTR MaLR -189 426 118 334 292 79 75 chr4 175159446 175159902 -9128760 + ERVL LTR ERVL 4831 5288 -476 1416 169 142 0 chr4 175160042 175160302 -9128360 - AluSx SINE Alu -5 297 1 234 62 0 0 chr4 175160342 175160374 -9128288 + (TG)n Simple_repeat Simple_repeat 1 32 0 279 268 158 16 chr4 175160412 175160539 -9128123 + MLT1L LTR MaLR 327 471 -144 1748 180 0 3 chr4 175160683 175160966 -9127696 + AluJb SINE Alu 10 291 -21 180 111 0 0 chr4 175161322 175161349 -9127313 + (TATG)n Simple_repeat Simple_repeat 2 28 0 27 0 0 0 chr4 175161792 175161819 -9126843 + AT_rich Low_complexity Low_complexity 1 27 0 298 341 81 0 chr4 175164924 175165047 -9123615 - MIR SINE MIR -122 140 8 252 336 56 14 chr4 175165155 175165298 -9123364 + L2 LINE L2 2232 2380 -934 183 368 0 0 chr4 175165604 175165661 -9123001 + L2 LINE L2 2732 2788 -526 22 35 0 0 chr4 175166467 175166496 -9122166 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr4 175166802 175166822 -9121840 + (CAA)n Simple_repeat Simple_repeat 2 21 0 457 319 56 61 chr4 175167102 175167444 -9121218 - L3 LINE CR1 -266 1311 972 21 0 0 0 chr4 175167553 175167574 -9121088 + AT_rich Low_complexity Low_complexity 1 21 0 276 365 65 0 chr4 175170847 175170954 -9117708 - L2 LINE L2 -9 3263 3150 294 143 0 0 chr4 175171037 175171086 -9117576 + (T)n Simple_repeat Simple_repeat 1 49 0 905 217 27 11 chr4 175171086 175171270 -9117392 - MER58A DNA MER1_type -37 187 1 251 271 165 0 chr4 175171427 175171560 -9117102 + L1MC/D LINE L1 5732 5886 -1922 231 36 0 0 chr4 175172422 175172450 -9116212 + (TG)n Simple_repeat Simple_repeat 2 29 0 203 208 19 0 chr4 175172450 175172503 -9116159 + (TA)n Simple_repeat Simple_repeat 2 55 0 292 235 8 8 chr4 175172515 175172647 -9116015 + (TA)n Simple_repeat Simple_repeat 1 132 0 202 180 0 40 chr4 175172654 175172704 -9115958 + (TATG)n Simple_repeat Simple_repeat 1 48 0 508 184 55 18 chr4 175173396 175173505 -9115157 + MER81 DNA DNA 1 113 -1 39 22 0 0 chr4 175174405 175174451 -9114211 + AT_rich Low_complexity Low_complexity 1 46 0 1898 134 13 23 chr4 175175592 175175898 -9112764 + AluJo SINE Alu 1 303 -9 671 310 70 4 chr4 175178204 175178446 -9110216 - MIR SINE MIR -2 260 3 391 257 86 0 chr4 175179359 175179464 -9109198 - L2 LINE L2 -7 3306 3193 289 226 211 0 chr4 175179484 175179599 -9109063 + LTR40a LTR ERVL 115 232 -230 5104 260 44 28 chr4 175179609 175181100 -9107562 + HERVL40 LTR ERVL 2038 3553 -1977 1523 196 56 39 chr4 175181100 175181554 -9107108 - MLT1B LTR MaLR 0 390 1 760 271 65 36 chr4 175181589 175181895 -9106767 + HERVL40 LTR ERVL 3641 3955 -1575 510 326 22 6 chr4 175182023 175182201 -9106461 + HERVL40 LTR ERVL 4480 4660 -870 1147 217 30 7 chr4 175182478 175182790 -9105872 + HERVL40 LTR ERVL 2791 5504 -26 4796 103 6 1 chr4 175182814 175183506 -9105156 - L1PA13 LINE L1 -8 6155 5461 4940 103 34 24 chr4 175183547 175184638 -9104024 - L1PB1 LINE L1 -4 6147 5021 1274 214 96 109 chr4 175184667 175185135 -9103527 + LTR40b LTR ERVL 1 462 0 450 269 99 25 chr4 175185137 175185338 -9103324 + L2 LINE L2 3097 3312 -1 451 250 114 66 chr4 175186126 175186354 -9102308 - L2 LINE L2 0 3313 3075 207 391 23 0 chr4 175186435 175186568 -9102094 + L2 LINE L2 2150 2285 -1029 240 234 143 0 chr4 175186581 175186658 -9102004 - L2 LINE L2 -1 3312 3225 470 309 17 34 chr4 175188134 175188312 -9100350 + MIR SINE MIR 12 186 -76 542 246 68 16 chr4 175188313 175188561 -9100101 + L1MC5 LINE L1 7672 7932 -29 2190 86 7 33 chr4 175189809 175190112 -9098550 - AluSq SINE Alu -16 297 3 2408 69 0 0 chr4 175190137 175190426 -9098236 - AluSc SINE Alu -20 289 1 236 140 180 0 chr4 175191034 175191084 -9097578 - MSTA LTR MaLR 0 428 370 21 82 0 0 chr4 175191474 175191523 -9097139 + AT_rich Low_complexity Low_complexity 1 49 0 1566 115 0 0 chr4 175192274 175192491 -9096171 - AluSq SINE Alu -15 298 82 513 243 23 40 chr4 175194345 175194518 -9094144 + MIR SINE MIR 81 250 -12 674 171 17 0 chr4 175194883 175194992 -9093670 - MLT1B LTR MaLR 0 390 280 3261 129 6 20 chr4 175194992 175195165 -9093497 + MER41B LTR ERV1 1 175 -460 1730 82 12 0 chr4 175195165 175195408 -9093254 + L1PA7 LINE L1 5909 6154 0 3261 129 6 20 chr4 175195408 175195770 -9092892 + MER41B LTR ERV1 175 528 -107 1714 108 4 4 chr4 175195782 175196013 -9092649 - AluSq SINE Alu -43 270 40 738 121 0 32 chr4 175196036 175196160 -9092502 + MER41B LTR ERV1 516 635 0 1341 114 114 4 chr4 175196169 175196414 -9092248 - MLT1B LTR MaLR -117 273 2 2223 105 3 0 chr4 175196630 175196926 -9091736 - AluSx SINE Alu -14 298 2 236 167 26 39 chr4 175197310 175197388 -9091274 + (TATAA)n Simple_repeat Simple_repeat 3 79 0 234 0 0 0 chr4 175200330 175200356 -9088306 + (TG)n Simple_repeat Simple_repeat 2 27 0 2062 97 0 85 chr4 175200920 175201249 -9087413 - AluSq SINE Alu -9 304 4 319 246 198 36 chr4 175201451 175201618 -9087044 - L1M4 LINE L1 -1010 5136 4943 220 322 0 0 chr4 175201767 175201826 -9086836 + MIR SINE MIR 33 91 -171 2027 136 0 3 chr4 175201981 175202275 -9086387 + AluSx SINE Alu 1 293 -19 25 0 0 0 chr4 175202510 175202535 -9086127 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 175202868 175202890 -9085772 + AT_rich Low_complexity Low_complexity 1 22 0 316 300 100 8 chr4 175203140 175203270 -9085392 + MIR SINE MIR 82 223 -39 234 184 20 0 chr4 175203524 175203573 -9085089 - L1MC4 LINE L1 -464 7578 7529 2147 84 35 0 chr4 175205231 175205515 -9083147 - AluSg SINE Alu -16 294 1 227 271 0 143 chr4 175207283 175207423 -9081239 + MIR SINE MIR 2 121 -141 22 0 0 0 chr4 175207700 175207722 -9080940 + AT_rich Low_complexity Low_complexity 1 22 0 422 266 0 0 chr4 175207941 175208020 -9080642 - MLT1K LTR MaLR -407 181 103 543 214 8 8 chr4 175208021 175208147 -9080515 - AluJb SINE Alu -180 132 7 325 309 0 0 chr4 175208153 175208234 -9080428 - MLT1K LTR MaLR -475 113 33 213 154 0 0 chr4 175209450 175209489 -9079173 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 349 326 92 12 chr4 175209706 175209893 -9078769 - MIR SINE MIR -48 214 16 213 373 55 0 chr4 175210133 175210243 -9078419 + MIR3 SINE MIR 83 198 -10 227 366 37 0 chr4 175210463 175210545 -9078117 - MIR3 SINE MIR -54 154 70 2392 127 25 0 chr4 175210664 175211019 -9077643 + THE1B LTR MaLR 1 364 0 1371 189 30 32 chr4 175212522 175212860 -9075802 + MLT1A1 LTR MaLR 1 337 -28 606 243 203 10 chr4 175215835 175216131 -9072531 + L1MC4 LINE L1 7599 7951 -91 258 175 65 32 chr4 175217156 175217310 -9071352 + (TATAA)n Simple_repeat Simple_repeat 5 163 0 231 88 0 0 chr4 175218121 175218155 -9070507 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 186 107 0 0 chr4 175218867 175218895 -9069767 - MIR SINE MIR -9 253 226 24 0 0 0 chr4 175219341 175219365 -9069297 + AT_rich Low_complexity Low_complexity 1 24 0 26 64 0 0 chr4 175219997 175220044 -9068618 + AT_rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chr4 175220141 175220170 -9068492 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4 175221713 175221736 -9066926 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr4 175221864 175221893 -9066769 + AT_rich Low_complexity Low_complexity 1 29 0 325 221 74 55 chr4 175224835 175224998 -9063664 - MER103 DNA DNA 0 166 1 201 147 0 0 chr4 175225154 175225188 -9063474 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 214 273 82 82 chr4 175225328 175225511 -9063151 + MIR SINE MIR 66 248 -14 597 257 0 0 chr4 175225660 175225796 -9062866 - MIR SINE MIR -7 255 120 401 317 21 7 chr4 175227567 175227709 -9060953 + MIR SINE MIR 49 192 -70 1909 273 65 44 chr4 175227777 175228637 -9060025 + L1ME3A LINE L1 5294 6165 -5 22 35 0 0 chr4 175229590 175229619 -9059043 + AT_rich Low_complexity Low_complexity 1 29 0 2553 44 3 0 chr4 175230876 175231174 -9057488 - AluY SINE Alu -11 300 2 28 29 0 0 chr4 175232099 175232134 -9056528 + AT_rich Low_complexity Low_complexity 1 35 0 665 277 122 25 chr4 175232785 175233023 -9055639 - MIR SINE MIR 0 262 2 22 35 0 0 chr4 175233905 175233934 -9054728 + AT_rich Low_complexity Low_complexity 1 29 0 610 238 69 74 chr4 175235724 175235913 -9052749 + MIR SINE MIR 41 228 -34 22 0 0 0 chr4 175237017 175237039 -9051623 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr4 175237796 175237823 -9050839 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr4 175237970 175237999 -9050663 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 175238652 175238673 -9049989 + AT_rich Low_complexity Low_complexity 1 21 0 1911 124 10 14 chr4 175239635 175239926 -9048736 - AluSq SINE Alu -19 294 5 2339 92 0 0 chr4 175240299 175240593 -9048069 - AluSg SINE Alu -16 294 1 326 171 65 49 chr4 175241632 175241755 -9046907 - L1MC4 LINE L1 0 8042 7918 259 207 57 25 chr4 175242056 175242181 -9046481 - L1MC4 LINE L1 -806 7039 6878 2211 116 0 3 chr4 175242299 175242610 -9046052 + AluSg SINE Alu 1 310 0 373 157 29 0 chr4 175244334 175244404 -9044258 - MER116 DNA Mariner -4 76 5 29 90 0 0 chr4 175244491 175244569 -9044093 + AT_rich Low_complexity Low_complexity 1 78 0 882 204 11 11 chr4 175245130 175245311 -9043351 + MER3 DNA MER1_type 2 182 -27 237 333 28 0 chr4 175245637 175245709 -9042953 + MIR3 SINE MIR 117 190 -18 502 301 119 59 chr4 175245802 175246414 -9042248 - L2 LINE L2 -639 2675 2027 479 315 135 5 chr4 175246865 175247087 -9041575 + MIR SINE MIR 12 262 0 289 290 114 23 chr4 175248462 175248593 -9040069 - L2 LINE L2 -3 3269 3127 2108 113 0 3 chr4 175249261 175249590 -9039072 + AluSg SINE Alu 1 310 0 242 211 155 0 chr4 175250209 175250280 -9038382 - MIR3 SINE MIR -30 178 97 513 167 0 0 chr4 175250585 175250687 -9037975 + (CA)n Simple_repeat Simple_repeat 1 102 0 28 29 0 0 chr4 175251486 175251521 -9037141 + AT_rich Low_complexity Low_complexity 1 35 0 632 134 289 0 chr4 175251527 175251676 -9036986 - L1PA16 LINE L1 -2 6164 5973 300 338 36 22 chr4 175251759 175251898 -9036764 + MER5B DNA MER1_type 42 182 -7 222 359 16 0 chr4 175252415 175252479 -9036183 + L2 LINE L2 3164 3228 -44 23 0 0 0 chr4 175252481 175252504 -9036158 + AT_rich Low_complexity Low_complexity 1 23 0 202 194 0 0 chr4 175252987 175253023 -9035639 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 270 225 111 115 chr4 175253268 175253521 -9035141 - MLT1J1 LTR MaLR -3 443 192 * 393 259 43 22 chr4 175253520 175253659 -9035003 - MLT1J2 LTR MaLR -298 152 11 31 26 0 0 chr4 175254205 175254243 -9034419 + AT_rich Low_complexity Low_complexity 1 38 0 1866 129 0 7 chr4 175256023 175256295 -9032367 - AluJb SINE Alu -13 299 30 430 211 11 0 chr4 175257583 175257678 -9030984 + FLAM_C SINE Alu 43 138 -5 23 54 0 0 chr4 175258501 175258538 -9030124 + AT_rich Low_complexity Low_complexity 1 37 0 200 35 35 0 chr4 175259726 175259755 -9028907 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 243 218 0 0 chr4 175260258 175260313 -9028349 + (TA)n Simple_repeat Simple_repeat 2 56 0 348 314 220 21 chr4 175262432 175262868 -9025794 + L2 LINE L2 2109 2631 -683 462 243 116 9 chr4 175263017 175263191 -9025471 + LTR50 LTR ERVL 357 632 -163 251 340 79 73 chr4 175263316 175263684 -9024978 + L2 LINE L2 2898 3267 -5 333 325 158 30 chr4 175265020 175265243 -9023419 - MIR SINE MIR -12 250 8 3508 203 38 21 chr4 175265843 175266684 -9021978 - MER63C DNA MER1_type 0 930 76 307 73 36 0 chr4 175266697 175266752 -9021910 + (TA)n Simple_repeat Simple_repeat 2 58 0 325 397 16 11 chr4 175268847 175269036 -9019626 - MIR3 SINE MIR -3 205 16 27 0 0 0 chr4 175269113 175269140 -9019522 + AT_rich Low_complexity Low_complexity 1 27 0 1050 177 5 53 chr4 175269261 175269470 -9019192 - AluJb SINE Alu -31 281 83 331 336 121 0 chr4 175269722 175269871 -9018791 - MIR3 SINE MIR -7 201 35 1861 173 0 3 chr4 175270212 175270519 -9018143 + AluSx SINE Alu 1 306 -6 993 299 72 6 chr4 175270672 175271020 -9017642 + MLT1J2 LTR MaLR 32 402 -48 1322 233 11 8 chr4 175271284 175271657 -9017005 - L1M4 LINE L1 -900 5246 4873 5184 128 12 8 chr4 175271725 175272558 -9016104 - L1PA16 LINE L1 -9 6157 5283 2336 93 6 13 chr4 175272558 175272869 -9015793 - AluSx SINE Alu -3 309 1 5184 128 12 8 chr4 175272869 175273242 -9015420 - L1PA16 LINE L1 -883 5283 4913 5706 222 57 24 chr4 175273313 175274573 -9014089 + L1M2c LINE L1 2 1303 -5486 2560 138 26 7 chr4 175274611 175275075 -9013587 + L1MA5A LINE L1 5821 6293 -4 1165 199 48 3 chr4 175275082 175275374 -9013288 - L1M4 LINE L1 -1455 4691 4387 398 135 43 18 chr4 175275448 175275611 -9013051 + (TA)n Simple_repeat Simple_repeat 1 167 0 333 0 0 0 chr4 175275667 175275704 -9012958 + (TA)n Simple_repeat Simple_repeat 2 38 0 1549 173 3 56 chr4 175275707 175276013 -9012649 - AluJo SINE Alu -22 290 1 1547 236 12 52 chr4 175276021 175276080 -9012582 - L1M4 LINE L1 -1827 4319 4259 1980 134 7 3 chr4 175276080 175276372 -9012290 - AluSx SINE Alu -19 293 1 1547 236 12 52 chr4 175276372 175276813 -9011849 - L1M4 LINE L1 -1887 4259 3839 2237 111 0 0 chr4 175277295 175277601 -9011061 - AluY SINE Alu -5 306 1 1268 202 19 0 chr4 175277682 175277944 -9010718 - L1MC3 LINE L1 -7 7778 7512 6962 56 3 4 chr4 175277948 175279465 -9009197 + L1PA7 LINE L1 4613 6151 -3 2059 208 18 7 chr4 175279465 175279913 -9008749 + L1MC3 LINE L1 7037 7489 -296 535 259 6 12 chr4 175279908 175280070 -9008592 - L1M4 LINE L1 -2290 3856 3696 * 1191 155 7 134 chr4 175280070 175280354 -9008308 - AluJo SINE Alu -2 310 63 354 206 244 0 chr4 175280384 175280515 -9008147 - L1M4 LINE L1 -2449 3697 3535 2360 112 0 0 chr4 175280529 175280842 -9007820 - AluSq SINE Alu 0 313 1 43 71 0 0 chr4 175280849 175280934 -9007728 + AT_rich Low_complexity Low_complexity 1 85 0 207 277 204 29 chr4 175280975 175281112 -9007550 + L2 LINE L2 3152 3312 -1 289 309 160 49 chr4 175281368 175281718 -9006944 - L2 LINE L2 -557 2757 2369 1152 94 165 0 chr4 175281718 175281888 -9006774 - AluSg/x SINE Alu -32 280 83 517 313 104 25 chr4 175282160 175282400 -9006262 + MIR SINE MIR 4 262 0 378 0 0 0 chr4 175282585 175282627 -9006035 + (TG)n Simple_repeat Simple_repeat 2 43 0 1494 136 0 0 chr4 175283157 175283371 -9005291 + AluSg/x SINE Alu 83 296 -16 180 77 0 0 chr4 175284427 175284453 -9004209 + (GA)n Simple_repeat Simple_repeat 2 27 0 834 227 0 0 chr4 175284807 175284957 -9003705 + FRAM SINE Alu 1 150 -16 221 119 24 0 chr4 175285585 175285627 -9003035 + (TG)n Simple_repeat Simple_repeat 1 43 0 251 305 46 58 chr4 175287726 175287900 -9000762 - L1MC5 LINE L1 -64 7897 7726 2247 133 118 8 chr4 175288419 175288802 -8999860 + MSTA LTR MaLR 1 425 -3 1773 167 10 0 chr4 175288804 175289097 -8999565 + AluSx SINE Alu 1 296 -16 670 303 54 29 chr4 175289501 175289742 -8998920 - MIR SINE MIR -14 248 2 323 383 51 14 chr4 175289757 175289974 -8998688 - L2 LINE L2 -545 2769 2545 312 267 60 40 chr4 175291028 175291178 -8997484 - MLT1J LTR MaLR -2 509 357 1341 213 114 29 chr4 175291229 175291411 -8997251 + MLT1D LTR MaLR 18 183 -245 309 26 0 0 chr4 175291411 175291449 -8997213 + (CA)n Simple_repeat Simple_repeat 2 39 0 1341 213 114 29 chr4 175291449 175291715 -8996947 + MLT1D LTR MaLR 183 427 -1 1736 278 97 34 chr4 175291823 175292836 -8995826 - L2 LINE L2 -5 3308 2242 271 333 28 14 chr4 175292842 175292983 -8995679 + L1ME LINE L1 137 279 -5926 305 310 20 0 chr4 175292985 175293085 -8995577 + L1ME LINE L1 1721 1822 -4574 2881 124 19 2 chr4 175293111 175293538 -8995124 + MER57B LTR ERV1 1 434 0 1092 303 71 11 chr4 175293539 175294424 -8994238 + L1ME LINE L1 1896 2797 -3418 6624 127 17 3 chr4 175294569 175295570 -8993092 + Tigger1 DNA MER2_type 1 1015 -1403 854 154 0 0 chr4 175295576 175295706 -8992956 + AluJo SINE Alu 6 135 -177 483 314 38 22 chr4 175295708 175296023 -8992639 + L1M4 LINE L1 4652 4971 -1175 1027 168 4 126 chr4 175296027 175296289 -8992373 - MLT2B1 LTR ERVL -4 516 287 23 33 0 0 chr4 175296746 175296776 -8991886 + AT_rich Low_complexity Low_complexity 1 30 0 355 285 54 15 chr4 175297160 175297290 -8991372 - MIR SINE MIR -50 212 78 1699 213 119 88 chr4 175297291 175298060 -8990602 + LTR1B LTR ERV1 1 983 -37 1755 160 62 7 chr4 175298161 175298470 -8990192 - AluSx SINE Alu 0 312 1 1841 325 133 17 chr4 175298507 175299686 -8988976 + L2 LINE L2 1866 3190 -123 336 306 24 48 chr4 175299795 175299919 -8988743 + L2 LINE L2 3192 3312 -1 341 268 106 49 chr4 175299960 175300083 -8988579 - MIR3 SINE MIR -75 133 4 22 0 0 0 chr4 175300180 175300202 -8988460 + AT_rich Low_complexity Low_complexity 1 22 0 2507 46 3 3 chr4 175302037 175302341 -8986321 - AluY SINE Alu -7 304 1 23 0 0 0 chr4 175302846 175302869 -8985793 + AT_rich Low_complexity Low_complexity 1 23 0 184 269 64 26 chr4 175304048 175304126 -8984536 + L2 LINE L2 2070 2150 -1164 2091 125 0 3 chr4 175305847 175306144 -8982518 + AluSg SINE Alu 1 296 -14 576 310 54 65 chr4 175306214 175306582 -8982080 + MLT1J LTR MaLR 32 395 -116 398 285 91 38 chr4 175306740 175306926 -8981736 - MIR SINE MIR -4 258 63 1934 125 56 3 chr4 175307101 175307389 -8981273 + AluJo SINE Alu 1 303 -9 1074 188 5 0 chr4 175307545 175307737 -8980925 - AluJo SINE Alu -115 197 5 497 305 105 42 chr4 175307833 175308415 -8980247 + L1ME3A LINE L1 5255 5881 -289 570 211 0 16 chr4 175308504 175308632 -8980030 - L1MB7 LINE L1 -98 6897 6772 2147 243 33 7 chr4 175308638 175309091 -8979571 - MLT2B3 LTR ERVL 0 554 90 1985 163 52 47 chr4 175309092 175309516 -8979146 + MSTB LTR MaLR 1 426 0 9291 172 18 8 chr4 175309547 175311162 -8977500 + MSTB-int LTR MaLR 15 1645 -6 2056 180 28 30 chr4 175311167 175311594 -8977068 + MSTB LTR MaLR 1 426 0 489 168 21 0 chr4 175311594 175311684 -8976978 - MLT2B3 LTR ERVL -428 92 1 3596 203 138 18 chr4 175311686 175313345 -8975317 - L1MB7 LINE L1 -223 6766 4887 1881 229 95 55 chr4 175313340 175313889 -8974773 - L1MB7 LINE L1 -3311 3646 3120 * 5893 185 32 1 chr4 175313889 175316001 -8972661 + L1PA15 LINE L1 4051 6151 -14 183 80 0 0 chr4 175316004 175316029 -8972633 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1881 229 95 55 chr4 175316029 175316621 -8972041 - L1MB7 LINE L1 -3838 3119 2472 21 0 0 0 chr4 175316716 175316737 -8971925 + AT_rich Low_complexity Low_complexity 1 21 0 1022 196 77 0 chr4 175316808 175317017 -8971645 - MER46B DNA MER2_type -133 103 4 1032 271 58 0 chr4 175317020 175317278 -8971384 - L1MB7 LINE L1 -6016 843 571 1993 130 0 7 chr4 175317282 175317586 -8971076 - AluSx SINE Alu 0 306 5 34 0 0 0 chr4 175317642 175317676 -8970986 + AT_rich Low_complexity Low_complexity 1 34 0 5376 140 20 11 chr4 175317705 175318652 -8970010 - L1PA16 LINE L1 -8 6158 5212 1709 275 34 34 chr4 175318651 175319179 -8969483 - L1MB7 LINE L1 -6324 535 8 * 4433 115 7 1 chr4 175319289 175319967 -8968695 - L1P LINE L1 -1165 4981 4300 2704 212 5 14 chr4 175319968 175320599 -8968063 + L1PA13 LINE L1 1653 2277 -4510 * 3513 75 4 8 chr4 175320596 175321378 -8967284 + L1P3 LINE L1 4952 5728 -426 * 3765 234 23 21 chr4 175321375 175322391 -8966271 + L1M4 LINE L1 3144 4161 -1985 1134 145 92 0 chr4 175322391 175322619 -8966043 + MER44D DNA MER2_type 47 565 -44 425 155 0 36 chr4 175322622 175322706 -8965956 + L1MC1 LINE L1 6253 6333 0 387 314 83 16 chr4 175322870 175323112 -8965550 - L1MDa LINE L1 -3647 2893 2636 1523 172 53 86 chr4 175323384 175323830 -8964832 - MLT1B LTR MaLR 0 390 1 664 280 107 53 chr4 175323967 175324775 -8963887 - L1MDa LINE L1 -3979 2561 1244 2730 62 4 133 chr4 175324775 175325255 -8963407 - L1PA6 LINE L1 -3 6151 5734 664 280 107 53 chr4 175325255 175325268 -8963394 - L1MDa LINE L1 -5296 1244 1233 1455 220 51 12 chr4 175325840 175326176 -8962486 + MLT1A1 LTR MaLR 1 349 -16 515 352 26 13 chr4 175327075 175327308 -8961354 - MIR SINE MIR -14 248 13 23 0 0 0 chr4 175328066 175328089 -8960573 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 175328482 175328505 -8960157 + AT_rich Low_complexity Low_complexity 1 23 0 246 274 0 60 chr4 175328970 175329054 -8959608 + MIR SINE MIR 44 122 -86 351 0 0 0 chr4 175329709 175329748 -8958914 + (CA)n Simple_repeat Simple_repeat 2 40 0 516 277 123 23 chr4 175329748 175329968 -8958694 - MER46C DNA MER2_type -96 242 1 556 280 91 95 chr4 175330443 175330940 -8957722 + L2 LINE L2 2819 3313 0 220 283 164 19 chr4 175331025 175331184 -8957478 + MIR SINE MIR 81 262 0 2531 4 0 0 chr4 175331369 175331646 -8957016 - AluYa5 SINE Alu 0 311 35 602 263 69 6 chr4 175332322 175332482 -8956180 - MIR3 SINE MIR -4 204 35 29 0 0 0 chr4 175332899 175332928 -8955734 + AT_rich Low_complexity Low_complexity 1 29 0 534 31 0 0 chr4 175333074 175333138 -8955524 + (TTTC)n Simple_repeat Simple_repeat 3 66 0 214 267 0 0 chr4 175334101 175334146 -8954516 + polypurine Low_complexity Low_complexity 3 47 0 21 0 0 0 chr4 175334159 175334180 -8954482 + AT_rich Low_complexity Low_complexity 1 21 0 451 258 80 26 chr4 175334973 175335124 -8953538 - L2 LINE L2 0 3313 3155 1577 158 52 24 chr4 175335344 175335635 -8953027 + AluJo SINE Alu 2 300 -12 823 315 88 18 chr4 175337762 175338263 -8950399 - L1ME4a LINE L1 -257 5864 5329 255 321 110 0 chr4 175341291 175341400 -8947262 + MIR SINE MIR 45 165 -97 24 32 0 0 chr4 175342985 175343016 -8945646 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr4 175343449 175343471 -8945191 + AT_rich Low_complexity Low_complexity 1 22 0 1871 156 38 57 chr4 175343754 175344126 -8944536 - MLT1A1 LTR MaLR 0 365 1 463 256 100 50 chr4 175344768 175344928 -8943734 + MIR SINE MIR 78 245 -17 21 57 0 0 chr4 175345324 175345359 -8943303 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr4 175345974 175346016 -8942646 + AT_rich Low_complexity Low_complexity 1 42 0 251 333 13 0 chr4 175346636 175346714 -8941948 + MER20B DNA MER1_type 96 174 -609 204 40 0 0 chr4 175347785 175347810 -8940852 + (TC)n Simple_repeat Simple_repeat 2 26 0 1869 126 18 11 chr4 175347810 175348096 -8940566 - AluSx SINE Alu -24 288 1 23 0 0 0 chr4 175348677 175348700 -8939962 + AT_rich Low_complexity Low_complexity 1 23 0 1347 316 93 17 chr4 175348745 175349859 -8938803 + L1MC4a LINE L1 4968 5283 -863 218 316 0 0 chr4 175350033 175350090 -8938572 + CT-rich Low_complexity Low_complexity 2 58 0 23 33 0 0 chr4 175350760 175350790 -8937872 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr4 175351339 175351371 -8937291 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 175351746 175351767 -8936895 + AT_rich Low_complexity Low_complexity 1 21 0 189 107 0 0 chr4 175352128 175352156 -8936506 + (A)n Simple_repeat Simple_repeat 1 28 0 209 176 0 0 chr4 175352162 175352196 -8936466 + GA-rich Low_complexity Low_complexity 4 37 0 1842 153 14 3 chr4 175352542 175352837 -8935825 + AluSx SINE Alu 1 298 -14 225 409 0 0 chr4 175353242 175353330 -8935332 + L2 LINE L2 2731 2818 -496 220 255 0 0 chr4 175353450 175353501 -8935161 + L2 LINE L2 3169 3219 -53 319 297 94 16 chr4 175353533 175353661 -8935001 - MIR SINE MIR -119 143 6 955 249 128 63 chr4 175355151 175355789 -8932873 - HAL1 LINE L1 0 2507 1828 910 85 0 0 chr4 175457008 175457126 -8831536 - AluSg/x SINE Alu -11 301 184 189 74 0 0 chr4 175457653 175457680 -8830982 + (TCC)n Simple_repeat Simple_repeat 2 28 0 39 38 0 0 chr4 175459399 175459452 -8829210 + GC_rich Low_complexity Low_complexity 1 53 0 183 42 0 0 chr4 175459805 175459829 -8828833 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3722 162 40 32 chr4 175461143 175461915 -8826747 - L1MD1 LINE L1 0 6242 5465 320 284 74 0 chr4 175462008 175462103 -8826559 + MIR SINE MIR 39 140 -122 23 33 0 0 chr4 175462212 175462242 -8826420 + AT_rich Low_complexity Low_complexity 1 30 0 760 175 18 0 chr4 175462267 175462425 -8826237 + L1MC/D LINE L1 5456 5622 -556 241 83 99 16 chr4 175462648 175462769 -8825893 + (TA)n Simple_repeat Simple_repeat 2 132 0 234 91 0 0 chr4 175462769 175462802 -8825860 + (TG)n Simple_repeat Simple_repeat 1 33 0 1653 188 0 0 chr4 175462802 175463079 -8825583 - AluJo SINE Alu -31 281 5 324 273 13 21 chr4 175463089 175463216 -8825446 - MLT1H LTR MaLR -379 170 1 277 264 7 142 chr4 175463337 175463485 -8825177 - MIR3 SINE MIR -73 135 8 24 0 0 0 chr4 175463577 175463601 -8825061 + AT_rich Low_complexity Low_complexity 1 24 0 2744 99 38 2 chr4 175463654 175464077 -8824585 - Tigger2 DNA MER2_type -1 2717 2280 460 95 0 0 chr4 175464075 175464138 -8824524 - Tigger2 DNA MER2_type -2649 69 7 * 26 64 0 0 chr4 175464509 175464556 -8824106 + AT_rich Low_complexity Low_complexity 1 47 0 601 295 124 62 chr4 175464665 175465004 -8823658 - L1MC4 LINE L1 0 8042 7665 366 191 19 19 chr4 175465004 175465109 -8823553 - L1MA4A LINE L1 0 6303 6199 601 295 124 62 chr4 175465109 175465237 -8823425 - L1MC4 LINE L1 -377 7665 7546 309 295 160 0 chr4 175465311 175465467 -8823195 - L1MC5 LINE L1 -520 7441 7261 954 170 0 13 chr4 175465482 175465641 -8823021 + FRAM SINE Alu 1 156 -20 22 0 0 0 chr4 175465641 175465663 -8822999 + AT_rich Low_complexity Low_complexity 1 22 0 312 269 35 29 chr4 175465666 175465837 -8822825 - L1MC4a LINE L1 -456 7352 7181 2151 126 3 3 chr4 175465879 175466188 -8822474 + AluSx SINE Alu 1 309 -3 206 121 0 0 chr4 175467218 175467251 -8821411 + (T)n Simple_repeat Simple_repeat 1 33 0 1461 204 0 7 chr4 175467577 175467837 -8820825 + AluJo SINE Alu 28 287 -25 588 65 0 0 chr4 175467837 175467914 -8820748 + (GGAA)n Simple_repeat Simple_repeat 2 78 0 1461 204 0 7 chr4 175467914 175467928 -8820734 + AluJo SINE Alu 287 300 -12 1054 144 35 12 chr4 175468767 175468940 -8819722 - FRAM SINE Alu 0 176 1 28 0 0 0 chr4 175469237 175469265 -8819397 + AT_rich Low_complexity Low_complexity 1 28 0 2235 151 42 36 chr4 175469504 175469980 -8818682 - L1MB3 LINE L1 -204 5979 5501 390 242 27 78 chr4 175470000 175470207 -8818455 - MER20B DNA MER1_type -17 202 1 2077 119 31 0 chr4 175471249 175471535 -8817127 - AluSx SINE Alu -17 295 1 362 341 16 16 chr4 175472163 175472289 -8816373 + L2 LINE L2 3138 3263 -9 1668 192 84 67 chr4 175472554 175473065 -8815597 + MLT2B1 LTR ERVL 1 520 0 277 264 85 47 chr4 175473383 175473489 -8815173 + L2 LINE L2 3148 3257 -15 192 40 0 0 chr4 175473582 175473607 -8815055 + (CAA)n Simple_repeat Simple_repeat 2 26 0 228 216 0 0 chr4 175473628 175473679 -8814983 + A-rich Low_complexity Low_complexity 1 51 0 35 63 0 0 chr4 175474359 175474422 -8814240 + AT_rich Low_complexity Low_complexity 1 63 0 208 250 158 0 chr4 175474839 175474915 -8813747 - L2 LINE L2 -12 3260 3173 2047 111 11 97 chr4 175475303 175475683 -8812979 - MER7A DNA MER2_type -1 345 1 661 191 11 7 chr4 175477965 175478113 -8810549 + L1MA4 LINE L1 5888 6045 -252 334 171 13 0 chr4 175478098 175478174 -8810488 + L1MB3 LINE L1 6087 6163 -20 * 217 155 35 0 chr4 175478179 175478237 -8810425 + (TA)n Simple_repeat Simple_repeat 1 60 0 720 184 0 81 chr4 175478252 175478426 -8810236 - MLT1E1 LTR MaLR -494 160 1 384 160 110 10 chr4 175478427 175478527 -8810135 - L1ME LINE L1 -358 5804 5695 3754 174 12 14 chr4 175478595 175479318 -8809344 - L1MB4 LINE L1 -6 6174 5453 204 118 29 0 chr4 175483956 175483990 -8804672 + CT-rich Low_complexity Low_complexity 1 35 0 1215 201 39 11 chr4 175485573 175485857 -8802805 + Charlie1a DNA MER1_type 51 342 -1113 590 168 50 0 chr4 175485964 175486065 -8802597 - U6 snRNA snRNA -1 106 1 1659 186 71 27 chr4 175486065 175486410 -8802252 + Charlie1a DNA MER1_type 328 656 -2105 1771 196 22 16 chr4 175486410 175486773 -8801889 - MLT1A1 LTR MaLR 0 365 1 1659 186 71 27 chr4 175486773 175487016 -8801646 + Charlie1a DNA MER1_type 656 1034 -421 253 111 0 0 chr4 175487045 175487081 -8801581 - U6 snRNA snRNA -71 36 1 529 244 0 0 chr4 175487081 175487200 -8801462 + Charlie1a DNA MER1_type 328 446 -1009 2048 117 3 7 chr4 175487205 175487496 -8801166 + AluSq SINE Alu 23 312 -1 26 0 0 0 chr4 175487975 175488001 -8800661 + AT_rich Low_complexity Low_complexity 1 26 0 180 0 0 0 chr4 175488796 175488816 -8799846 + (T)n Simple_repeat Simple_repeat 1 20 0 2002 140 73 22 chr4 175489353 175489709 -8798953 - THE1C LTR MaLR -1 374 1 232 282 146 27 chr4 175490615 175490725 -8797937 - MIR SINE MIR -94 168 46 189 0 0 0 chr4 175490960 175490981 -8797681 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 680 162 0 0 chr4 175490982 175491145 -8797517 - AluSg/x SINE Alu 0 347 185 279 0 0 0 chr4 175493936 175493967 -8794695 + (TG)n Simple_repeat Simple_repeat 1 31 0 239 259 12 59 chr4 175496525 175496610 -8792052 - MER5A DNA MER1_type -68 121 41 1313 143 0 5 chr4 175496710 175496906 -8791756 + AluSg/x SINE Alu 116 310 -2 16877 142 71 13 chr4 175497037 175500173 -8788489 - L1M1 LINE L1 -3982 3583 16 1667 141 64 3 chr4 175500173 175500485 -8788177 - L1MA4 LINE L1 -45 6255 5925 * 3922 193 13 15 chr4 175500481 175501717 -8786945 - L1 LINE L1 -3082 3766 2534 719 131 0 7 chr4 175501717 175501854 -8786808 + Charlie5 DNA MER1_type 2477 2612 0 738 318 102 43 chr4 175503956 175504447 -8784215 - L3 LINE CR1 -1 1576 1057 1134 303 103 2 chr4 175505085 175505626 -8783036 + Charlie7 DNA MER1_type 56 651 -1961 237 221 188 34 chr4 175505624 175505773 -8782889 + Charlie7 DNA MER1_type 2410 2581 -31 * 555 323 94 4 chr4 175506145 175506380 -8782282 - MIR SINE MIR -3 259 4 2486 84 7 0 chr4 175506741 175507049 -8781613 + AluSp SINE Alu 1 310 -3 370 229 29 19 chr4 175511653 175511758 -8776904 - MIR SINE MIR -102 160 55 263 222 0 19 chr4 175512200 175512254 -8776408 - L2 LINE L2 -219 3053 3001 21 0 0 0 chr4 175513112 175513133 -8775529 + AT_rich Low_complexity Low_complexity 1 21 0 192 77 0 0 chr4 175514403 175514429 -8774233 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 238 219 0 37 chr4 175514476 175514558 -8774104 + GA-rich Low_complexity Low_complexity 2 80 0 264 258 0 0 chr4 175516137 175516199 -8772463 + (CCA)n Simple_repeat Simple_repeat 1 62 0 27 0 0 0 chr4 175519838 175519865 -8768797 + GC_rich Low_complexity Low_complexity 1 27 0 207 87 65 22 chr4 175521426 175521472 -8767190 + (CATATA)n Simple_repeat Simple_repeat 3 50 0 326 250 34 23 chr4 175521511 175521599 -8767063 - MIR3 SINE MIR -16 192 104 2216 81 0 39 chr4 175521938 175522246 -8766416 + AluSx SINE Alu 3 298 -14 207 0 0 0 chr4 175522768 175522791 -8765871 + (TA)n Simple_repeat Simple_repeat 2 24 0 2295 78 0 0 chr4 175525706 175526026 -8762636 + AluSx SINE Alu 1 320 0 189 228 13 101 chr4 175531246 175531325 -8757337 + L2 LINE L2 3242 3313 0 1433 127 4 35 chr4 175532458 175532723 -8755939 + AluJb SINE Alu 29 284 -28 207 0 0 0 chr4 175532723 175532746 -8755916 + (CA)n Simple_repeat Simple_repeat 2 24 0 207 299 60 60 chr4 175533547 175533664 -8754998 + L2 LINE L2 3152 3268 -4 252 143 0 0 chr4 175533756 175533798 -8754864 + (CTA)n Simple_repeat Simple_repeat 2 43 0 248 337 53 0 chr4 175534336 175534431 -8754231 + MIR SINE MIR 38 137 -71 189 171 0 0 chr4 175534461 175534496 -8754166 + (CA)n Simple_repeat Simple_repeat 2 36 0 372 269 106 0 chr4 175534666 175534770 -8753892 - MIR3 SINE MIR -12 196 82 2172 105 0 29 chr4 175535239 175535545 -8753117 + AluSx SINE Alu 1 297 -15 2459 87 0 0 chr4 175536083 175536394 -8752268 - AluY SINE Alu 0 311 1 423 276 9 0 chr4 175536469 175536574 -8752088 + MIR SINE MIR 147 252 -10 328 301 46 81 chr4 175536621 175536880 -8751782 + L2 LINE L2 2240 2489 -825 275 281 52 31 chr4 175536972 175537068 -8751594 + L2 LINE L2 2659 2756 -558 449 317 189 13 chr4 175537161 175537473 -8751189 + L2 LINE L2 2904 3270 -2 401 234 142 28 chr4 175537502 175537643 -8751019 + MIR SINE MIR 63 219 -43 1200 112 0 0 chr4 175539585 175539746 -8748916 - AluSc SINE Alu -13 296 136 1187 126 137 56 chr4 175539838 175540108 -8748554 - MSTA LTR MaLR -133 295 4 279 157 29 43 chr4 175540633 175540703 -8747959 + LTR33A LTR ERVL 455 523 0 23 0 0 0 chr4 175541062 175541085 -8747577 + AT_rich Low_complexity Low_complexity 1 23 0 1792 126 39 39 chr4 175541086 175541371 -8747291 - AluJb SINE Alu -27 285 1 1945 129 11 3 chr4 175545076 175545398 -8743264 - AluSx SINE Alu 0 312 1 22 0 0 0 chr4 175545479 175545501 -8743161 + AT_rich Low_complexity Low_complexity 1 22 0 640 231 30 30 chr4 175546048 175546217 -8742445 + MER5B DNA MER1_type 7 175 -3 194 91 30 0 chr4 175546549 175546582 -8742080 + GA-rich Low_complexity Low_complexity 1 34 0 443 249 92 40 chr4 175547568 175547741 -8740921 - MLT1L LTR MaLR -272 343 162 1118 207 33 0 chr4 175547756 175547969 -8740693 + MER58A DNA MER1_type 1 220 -4 2114 123 0 0 chr4 175548067 175548352 -8740310 + AluSq SINE Alu 1 285 -28 405 0 0 0 chr4 175548352 175548397 -8740265 + (CA)n Simple_repeat Simple_repeat 2 46 0 658 236 16 0 chr4 175548512 175548639 -8740023 + FLAM_A SINE Alu 2 130 -3 369 106 0 61 chr4 175548684 175548750 -8739912 + FLAM SINE Alu 76 129 -4 1891 181 75 21 chr4 175549377 175549752 -8738910 + MSTD LTR MaLR 2 396 0 219 375 42 33 chr4 175550281 175550401 -8738261 - L2 LINE L2 -1 3271 3151 898 140 13 40 chr4 175550462 175550612 -8738050 - FRAM SINE Alu -30 146 1 291 292 50 25 chr4 175550612 175550732 -8737930 + L2 LINE L2 3191 3313 0 1711 204 62 11 chr4 175551321 175551693 -8736969 + MLT1C LTR MaLR 69 459 -8 243 405 46 13 chr4 175551706 175551859 -8736803 + L2 LINE L2 3075 3232 -40 235 250 45 8 chr4 175552673 175552805 -8735857 + (TA)n Simple_repeat Simple_repeat 2 138 0 1360 199 46 0 chr4 175552814 175553075 -8735587 - AluJb SINE Alu -19 293 21 957 263 78 38 chr4 175553085 175553458 -8735204 - MLT1J2 LTR MaLR -57 393 6 28 0 0 0 chr4 175553824 175553852 -8734810 + AT_rich Low_complexity Low_complexity 1 28 0 1645 175 0 26 chr4 175553917 175554220 -8734442 + AluJb SINE Alu 1 295 -17 23 0 0 0 chr4 175554220 175554243 -8734419 + AT_rich Low_complexity Low_complexity 1 23 0 183 80 0 0 chr4 175555055 175555080 -8733582 + (TG)n Simple_repeat Simple_repeat 2 26 0 333 0 0 0 chr4 175557184 175557221 -8731441 + (CA)n Simple_repeat Simple_repeat 2 38 0 234 241 19 136 chr4 175557304 175557466 -8731196 + MER5A DNA MER1_type 32 185 -4 2139 96 4 4 chr4 175557475 175557790 -8730872 - AluSx SINE Alu 0 316 2 709 239 233 19 chr4 175558258 175558572 -8730090 - LTR50 LTR ERVL -8 787 407 287 262 219 14 chr4 175558648 175558858 -8729804 - LTR50 LTR ERVL -518 277 25 525 197 98 0 chr4 175558969 175559101 -8729561 - MER103 DNA DNA -8 158 14 334 149 14 14 chr4 175559892 175559966 -8728696 + GA-rich Low_complexity Low_complexity 2 75 0 660 143 0 0 chr4 175560000 175560112 -8728550 + (GGAA)n Simple_repeat Simple_repeat 4 115 0 688 224 90 45 chr4 175561198 175561399 -8727263 - L1PA16 LINE L1 0 6166 5957 1968 142 0 55 chr4 175561509 175561834 -8726828 - AluJb SINE Alu -5 307 1 923 303 64 56 chr4 175561834 175562332 -8726330 - L1MEd LINE L1 -5396 723 222 373 209 157 9 chr4 175562368 175562483 -8726179 - L1MEd LINE L1 -5977 142 11 1538 194 3 40 chr4 175562749 175563048 -8725614 + AluJo SINE Alu 5 292 -20 309 258 0 0 chr4 175563654 175563720 -8724942 - L3b LINE CR1 -216 1367 1302 385 121 30 30 chr4 175564526 175564592 -8724070 + MLT1C LTR MaLR 1 66 -401 466 360 20 0 chr4 175564617 175564770 -8723892 + MER91A DNA MER1_type 2 157 -39 1649 177 13 20 chr4 175565573 175565873 -8722789 + AluJo SINE Alu 2 299 -13 884 161 69 0 chr4 175566137 175566311 -8722351 - MER53 DNA DNA 0 189 4 237 237 51 0 chr4 175566430 175566489 -8722173 + MIR SINE MIR 201 262 0 1868 130 41 0 chr4 175567399 175567713 -8720949 - AluSx SINE Alu 0 325 1 1795 228 12 42 chr4 175568203 175568611 -8720051 + MSTD LTR MaLR 1 396 0 251 228 0 0 chr4 175568650 175568707 -8719955 + A-rich Low_complexity Low_complexity 1 57 0 28 61 0 0 chr4 175568756 175568805 -8719857 + AT_rich Low_complexity Low_complexity 1 49 0 198 298 53 0 chr4 175570986 175571043 -8717619 - L2 LINE L2 -4 3309 3250 420 234 91 67 chr4 175571900 175572109 -8716553 - L2 LINE L2 -1 3312 3099 2232 136 133 13 chr4 175573317 175573699 -8714963 - MSTA LTR MaLR 0 428 1 448 212 70 154 chr4 175573787 175574145 -8714517 - MLT1I LTR MaLR -16 393 66 319 225 14 0 chr4 175574315 175574386 -8714276 + MLT1I LTR MaLR 281 352 -57 973 142 0 19 chr4 175574550 175574705 -8713957 + FRAM SINE Alu 8 159 -17 321 118 0 0 chr4 175574705 175574756 -8713906 + (GGAA)n Simple_repeat Simple_repeat 1 51 0 188 326 0 0 chr4 175574803 175574852 -8713810 + L2 LINE L2 3211 3259 -13 314 197 16 0 chr4 175574997 175575058 -8713604 + MIR3 SINE MIR 126 187 -21 567 116 23 15 chr4 175575176 175575444 -8713218 + (TG)n Simple_repeat Simple_repeat 1 270 0 1023 140 12 12 chr4 175575703 175575867 -8712795 - FRAM SINE Alu -2 164 1 245 298 44 35 chr4 175576604 175576718 -8711944 + MIR SINE MIR 74 188 -74 218 306 42 0 chr4 175579440 175579512 -8709150 - MER5B DNA MER1_type -1 177 103 33 66 0 0 chr4 175580709 175580770 -8707892 + AT_rich Low_complexity Low_complexity 1 61 0 434 284 18 0 chr4 175581113 175581222 -8707440 - L2 LINE L2 -1 3312 3202 251 147 206 15 chr4 175581570 175581638 -8707024 - MER103 DNA DNA -3 163 83 2272 117 0 0 chr4 175582452 175582752 -8705910 + AluSx SINE Alu 1 300 -12 2417 73 3 0 chr4 175583321 175583628 -8705034 - AluY SINE Alu -2 309 6 10818 156 31 33 chr4 175584736 175584793 -8703869 + L1MC3 LINE L1 5659 5715 -2070 1992 112 3 61 chr4 175584793 175585106 -8703556 - AluSx SINE Alu -17 295 1 10818 156 31 33 chr4 175585106 175585118 -8703544 + L1MC3 LINE L1 5715 5726 -2059 2239 112 3 3 chr4 175585118 175585414 -8703248 - AluSx SINE Alu -15 297 2 10818 156 31 33 chr4 175585414 175587473 -8701189 + L1MC3 LINE L1 5726 7785 0 215 284 34 11 chr4 175587482 175587570 -8701092 - MIR3 SINE MIR 0 208 119 239 114 0 0 chr4 175587790 175587825 -8700837 - L2 LINE L2 0 3272 3238 475 282 188 11 chr4 175588146 175588327 -8700335 + MIR SINE MIR 16 228 -34 231 235 0 0 chr4 175588333 175588384 -8700278 + (TTA)n Simple_repeat Simple_repeat 1 51 0 219 69 0 0 chr4 175590076 175590105 -8698557 + (CAT)n Simple_repeat Simple_repeat 1 29 0 306 264 58 8 chr4 175591316 175591437 -8697225 + L2 LINE L2 1982 2108 -1206 734 231 136 23 chr4 175591487 175591708 -8696954 + MIR SINE MIR 2 247 -15 271 284 112 30 chr4 175591814 175591948 -8696714 + L2 LINE L2 2245 2389 -925 194 330 163 20 chr4 175592256 175592485 -8696177 + L2 LINE L2 2751 3002 -270 180 0 0 0 chr4 175592813 175592833 -8695829 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 321 47 0 0 chr4 175592832 175592875 -8695787 + (CA)n Simple_repeat Simple_repeat 1 43 0 2119 102 0 3 chr4 175595247 175595568 -8693094 - AluSc SINE Alu 0 320 1 339 25 0 0 chr4 175595588 175595628 -8693034 + (CA)n Simple_repeat Simple_repeat 1 40 0 1276 233 288 17 chr4 175595883 175596467 -8692195 + L2 LINE L2 2080 2821 -493 497 325 175 16 chr4 175597023 175597331 -8691331 - L2 LINE L2 -36 3277 2921 2143 225 29 62 chr4 175597385 175597686 -8690976 + L1M1 LINE L1 3027 3336 -4229 2316 79 0 3 chr4 175597686 175597978 -8690684 - AluY SINE Alu -20 291 1 2143 225 29 62 chr4 175597978 175598814 -8689848 + L1M1 LINE L1 3336 4158 -3407 2169 120 0 0 chr4 175599231 175599532 -8689130 - AluSx SINE Alu -11 301 1 533 291 111 0 chr4 175599785 175599984 -8688678 + L3 LINE CR1 1257 1477 -100 1462 175 82 0 chr4 175600435 175600692 -8687970 - AluJo SINE Alu -34 278 1 217 301 12 36 chr4 175600694 175600777 -8687885 - MER5A DNA MER1_type -106 83 3 2206 89 3 54 chr4 175601552 175601868 -8686794 + AluSq SINE Alu 1 300 -13 1445 114 5 14 chr4 175602091 175602302 -8686360 + AluSg/x SINE Alu 95 303 -7 290 320 85 2 chr4 175602460 175602603 -8686059 - MIR SINE MIR -65 143 37 983 141 15 112 chr4 175602633 175602766 -8685896 + MER5A DNA MER1_type 4 113 -76 2235 70 0 7 chr4 175602766 175603088 -8685574 - AluY SINE Alu 0 320 1 983 141 15 112 chr4 175603088 175603159 -8685503 + MER5A DNA MER1_type 113 189 0 1248 159 64 9 chr4 175604420 175604640 -8684022 + AluJo SINE Alu 81 312 0 1841 160 7 10 chr4 175604695 175604995 -8683667 + AluJo SINE Alu 1 299 -13 368 307 64 36 chr4 175605402 175605542 -8683120 - L2 LINE L2 -2 3311 3168 2271 62 0 55 chr4 175605893 175606200 -8682462 + AluY SINE Alu 1 290 -21 34 0 0 0 chr4 175606646 175606680 -8681982 + AT_rich Low_complexity Low_complexity 1 34 0 1921 156 0 3 chr4 175606856 175607139 -8681523 - AluSx SINE Alu -15 297 16 21 0 0 0 chr4 175607175 175607196 -8681466 + AT_rich Low_complexity Low_complexity 1 21 0 588 375 0 0 chr4 175607210 175607386 -8681276 - MIR SINE MIR -81 181 6 232 125 18 18 chr4 175608301 175608357 -8680305 + (TA)n Simple_repeat Simple_repeat 1 56 0 967 234 19 0 chr4 175608766 175609022 -8679640 + L1M4 LINE L1 2301 2561 -3585 258 333 30 0 chr4 175609414 175609513 -8679149 - MIR SINE MIR -44 218 117 906 124 0 0 chr4 175610031 175610176 -8678486 - L1MA4 LINE L1 -11 6289 6145 6855 230 70 25 chr4 175610278 175612414 -8676248 - L1M4 LINE L1 -967 5179 2948 515 273 82 6 chr4 175612515 175612698 -8675964 + L1MB5 LINE L1 5975 6171 -3 21 82 0 0 chr4 175613183 175613232 -8675430 + AT_rich Low_complexity Low_complexity 1 49 0 1714 186 6 3 chr4 175613328 175613639 -8675023 - AluJb SINE Alu 0 312 1 760 220 59 11 chr4 175613898 175614084 -8674578 + MER20 DNA MER1_type 1 195 -24 21 0 0 0 chr4 175614826 175614847 -8673815 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 43 chr4 175615534 175615561 -8673101 + AT_rich Low_complexity Low_complexity 1 27 -17 2075 144 0 10 chr4 175615561 175615874 -8672788 + AluJb SINE Alu 1 310 -2 31 0 0 43 chr4 175615874 175615892 -8672770 + AT_rich Low_complexity Low_complexity 27 44 0 2065 163 3 6 chr4 175616393 175616730 -8671932 - MER1B DNA MER1_type 0 337 2 414 176 14 0 chr4 175617326 175617400 -8671262 - FLAM SINE Alu -14 129 55 38 22 0 0 chr4 175617414 175617459 -8671203 + AT_rich Low_complexity Low_complexity 1 45 0 1968 143 0 17 chr4 175617902 175618195 -8670467 + AluSx SINE Alu 1 288 -24 27 0 0 0 chr4 175618658 175618685 -8669977 + AT_rich Low_complexity Low_complexity 1 27 0 2138 114 0 3 chr4 175619399 175619697 -8668965 + AluSx SINE Alu 1 297 -15 214 304 14 7 chr4 175621124 175621272 -8667390 + (CCG)n Simple_repeat Simple_repeat 3 151 0 226 208 0 0 chr4 175621210 175621258 -8667404 + (CGG)n Simple_repeat Simple_repeat 2 49 0 198 0 0 0 chr4 175621761 175621783 -8666879 + (T)n Simple_repeat Simple_repeat 1 22 0 378 287 25 0 chr4 175622524 175622646 -8666016 + (CGTG)n Simple_repeat Simple_repeat 3 127 0 1053 74 68 31 chr4 175622851 175623013 -8665649 - AluSg/x SINE Alu -16 296 129 455 188 79 0 chr4 175623173 175623274 -8665388 + Charlie5 DNA MER1_type 1 109 -2503 780 155 173 65 chr4 175623290 175623568 -8665094 + Charlie5 DNA MER1_type 2234 2541 -71 2246 106 0 0 chr4 175623607 175623900 -8664762 + AluSx SINE Alu 5 297 -15 2293 172 22 17 chr4 175624059 175624518 -8664144 - MER65C LTR ERV1 0 461 1 23 33 0 0 chr4 175624548 175624578 -8664084 + AT_rich Low_complexity Low_complexity 1 30 0 266 366 45 50 chr4 175624899 175625120 -8663542 - L2 LINE L2 -29 3243 3024 623 243 28 40 chr4 175625269 175625446 -8663216 - MER69A DNA AcHobo 0 177 3 23 54 0 0 chr4 175625639 175625676 -8662986 + AT_rich Low_complexity Low_complexity 1 37 0 298 255 28 66 chr4 175625939 175625982 -8662680 - L1ME3A LINE L1 -29 6401 6358 1249 206 67 50 chr4 175625982 175626341 -8662321 + MLT1A1 LTR MaLR 1 365 0 298 255 28 66 chr4 175626341 175626403 -8662259 - L1ME3A LINE L1 -72 6358 6300 743 187 164 101 chr4 175626407 175626675 -8661987 + MER45C DNA AcHobo 2 286 -667 311 158 61 12 chr4 175626798 175626880 -8661782 + MER45C DNA AcHobo 763 848 -105 1392 252 114 66 chr4 175627071 175628920 -8659742 - L1ME3A LINE L1 -221 6209 4272 684 229 197 44 chr4 175628924 175629354 -8659308 - L1ME3A LINE L1 -2752 3654 3115 1644 185 19 25 chr4 175629354 175629668 -8658994 - AluJb SINE Alu 0 312 1 684 229 197 44 chr4 175629668 175629806 -8658856 - L1ME3A LINE L1 -3291 3115 2999 250 298 35 23 chr4 175629794 175629965 -8658697 - L1ME3A LINE L1 -5107 1302 1130 * 497 208 50 17 chr4 175632266 175632386 -8656276 + MER77 LTR ERV1 125 248 -357 348 24 0 0 chr4 175632450 175632491 -8656171 + (CA)n Simple_repeat Simple_repeat 2 42 0 778 143 34 0 chr4 175632493 175632612 -8656050 - AluJb SINE Alu -189 123 1 475 211 9 53 chr4 175632613 175632713 -8655949 + MER77 LTR ERV1 493 589 -16 5073 80 8 29 chr4 175632713 175633415 -8655247 - LTR12 LTR ERV1 0 688 1 475 211 9 53 chr4 175633415 175633428 -8655234 + MER77 LTR ERV1 589 601 -4 1017 157 10 73 chr4 175636324 175636364 -8652298 - AluJo SINE Alu -2 310 269 2392 84 3 0 chr4 175636364 175636662 -8652000 - AluSg SINE Alu -11 299 1 1017 157 10 73 chr4 175636662 175636810 -8651852 - AluJo SINE Alu -43 269 133 336 48 0 0 chr4 175636810 175636852 -8651810 + (TA)n Simple_repeat Simple_repeat 2 43 0 1017 157 10 73 chr4 175636852 175636866 -8651796 - AluJo SINE Alu -179 133 120 1796 158 24 17 chr4 175637739 175638030 -8650632 - AluJo SINE Alu -19 293 1 1718 257 58 19 chr4 175638786 175639906 -8648756 - L1ME LINE L1 -445 5794 4632 964 269 36 60 chr4 175640011 175640324 -8648338 - L1ME LINE L1 -1996 4219 3919 2074 142 0 0 chr4 175640324 175640636 -8648026 - AluSx SINE Alu 0 312 1 964 269 36 60 chr4 175640636 175640821 -8647841 - L1ME LINE L1 -2296 3919 3731 585 129 122 7 chr4 175640832 175640979 -8647683 + MER53 DNA DNA 3 166 -23 443 250 59 77 chr4 175641004 175641091 -8647571 - L1ME LINE L1 -2503 3712 3625 1911 145 3 23 chr4 175641091 175641394 -8647268 - AluSx SINE Alu -15 297 1 443 250 59 77 chr4 175641394 175641533 -8647129 - L1ME LINE L1 -2590 3625 3489 2480 143 39 5 chr4 175641533 175641947 -8646715 + MSTA LTR MaLR 1 428 0 443 250 59 77 chr4 175641947 175641991 -8646671 - L1ME LINE L1 -2726 3489 3446 475 233 0 25 chr4 175642008 175642128 -8646534 - FLAM_C SINE Alu 0 143 27 496 267 78 9 chr4 175642155 175642462 -8646200 - L1ME LINE L1 -3742 2473 2166 4774 151 44 52 chr4 175642524 175642872 -8645790 - L1MD1 LINE L1 0 6242 5893 2199 113 3 0 chr4 175642872 175643165 -8645497 - AluSc SINE Alu -15 294 1 4774 151 44 52 chr4 175643165 175644112 -8644550 - L1MD1 LINE L1 -349 5893 4966 333 311 78 36 chr4 175644155 175644348 -8644314 - L1ME LINE L1 -4910 1295 1095 1721 179 0 10 chr4 175644530 175644821 -8643841 - AluJo SINE Alu -24 288 1 392 270 6 31 chr4 175644838 175645001 -8643661 - HAL1 LINE L1 -921 1586 1428 2111 129 0 3 chr4 175645038 175645332 -8643330 + AluSx SINE Alu 1 293 -19 366 80 0 0 chr4 175645333 175645383 -8643279 + (TA)n Simple_repeat Simple_repeat 2 51 0 832 271 178 73 chr4 175645434 175646047 -8642615 - L1MEd LINE L1 -4866 1253 577 231 253 74 53 chr4 175646594 175646689 -8641973 - L2 LINE L2 -93 3220 3124 986 331 89 11 chr4 175646723 175647202 -8641460 - L2 LINE L2 -285 3028 2511 291 282 78 10 chr4 175648063 175648166 -8640496 - L2 LINE L2 -4 3268 3159 1362 235 44 30 chr4 175648336 175648698 -8639964 + LTR16C LTR ERVL 94 460 -31 391 254 79 32 chr4 175649045 175649171 -8639491 + MIR SINE MIR 1 132 -130 1868 129 55 0 chr4 175649694 175649966 -8638696 + AluSx SINE Alu 1 287 -25 2181 104 10 7 chr4 175650058 175650356 -8638306 + AluSc SINE Alu 1 299 -10 501 283 27 33 chr4 175650567 175650867 -8637795 - L1MEc LINE L1 -4699 1697 1400 1682 166 10 21 chr4 175651739 175652029 -8636633 - AluJo SINE Alu -25 287 1 1529 159 0 0 chr4 175652995 175653228 -8635434 - AluJb SINE Alu -14 298 66 2061 108 4 0 chr4 175653228 175653503 -8635159 - AluSx SINE Alu -34 278 1 265 309 43 0 chr4 175653644 175653738 -8634924 - MIR3 SINE MIR 0 208 111 1988 116 44 0 chr4 175653739 175654014 -8634648 + AluSp SINE Alu 1 287 -26 1080 182 134 63 chr4 175654697 175655032 -8633630 - MLT1C LTR MaLR -106 361 3 1981 107 0 0 chr4 175655128 175655381 -8633281 + AluSx SINE Alu 1 253 -59 212 299 161 0 chr4 175656162 175656249 -8632413 + L2 LINE L2 3208 3308 -5 714 88 53 0 chr4 175656566 175656680 -8631982 - L1MB4 LINE L1 -2 6178 6059 180 0 0 0 chr4 175658720 175658740 -8629922 + (GGA)n Simple_repeat Simple_repeat 1 20 0 36 0 0 0 chr4 175658744 175658780 -8629882 + GC_rich Low_complexity Low_complexity 1 36 0 308 179 0 12 chr4 175660430 175660514 -8628148 + GA-rich Low_complexity Low_complexity 2 84 0 29 47 0 0 chr4 175660856 175660899 -8627763 + AT_rich Low_complexity Low_complexity 1 43 0 543 101 0 0 chr4 175661188 175661267 -8627395 + (TA)n Simple_repeat Simple_repeat 1 79 0 1928 114 18 4 chr4 175661267 175661540 -8627122 - AluSx SINE Alu -35 277 1 818 133 218 0 chr4 175661721 175661909 -8626753 - Tigger7 DNA MER2_type 0 2487 2259 1434 70 5 5 chr4 175663500 175663686 -8624976 - AluY SINE Alu -15 296 111 1737 179 29 0 chr4 175663692 175663972 -8624690 + AluJb SINE Alu 2 289 -23 191 288 17 34 chr4 175664075 175664134 -8624528 - L2 LINE L2 -28 3285 3228 385 279 188 10 chr4 175664191 175664328 -8624334 - L1MC/D LINE L1 -2275 5533 5422 2423 90 0 10 chr4 175664328 175664638 -8624024 + AluSq SINE Alu 1 307 -6 385 279 188 10 chr4 175664638 175664697 -8623965 - L1MC/D LINE L1 -2386 5422 5302 260 315 0 0 chr4 175665460 175665533 -8623129 + L2 LINE L2 3194 3266 -47 441 294 165 23 chr4 175665556 175665774 -8622888 - Charlie8 DNA MER1_type -2167 250 2 401 280 200 11 chr4 175666368 175666543 -8622119 + MIR SINE MIR 50 257 -5 570 198 0 0 chr4 175666609 175666705 -8621957 - AluJ SINE Alu -82 230 135 * 656 143 0 0 chr4 175666701 175666799 -8621863 - AluJ SINE Alu -209 103 6 215 179 0 0 chr4 175666960 175666999 -8621663 + MIR SINE MIR 75 113 -149 469 201 58 22 chr4 175667132 175667271 -8621391 - L1ME3 LINE L1 -333 5829 5686 432 343 70 10 chr4 175667295 175667607 -8621055 - L1MEc LINE L1 -6031 365 35 26 50 0 0 chr4 175668351 175668391 -8620271 + AT_rich Low_complexity Low_complexity 1 40 0 294 345 64 0 chr4 175671242 175671352 -8617310 + L2 LINE L2 2326 2442 -872 1230 207 141 26 chr4 175671498 175671875 -8616787 + Charlie1a DNA MER1_type 1 420 -1035 2012 166 36 45 chr4 175671877 175672407 -8616255 + Charlie1a DNA MER1_type 931 1455 0 31 26 0 0 chr4 175673647 175673685 -8614977 + AT_rich Low_complexity Low_complexity 1 38 0 1418 220 208 68 chr4 175675946 175676862 -8611800 - L2 LINE L2 0 3313 2254 724 283 106 38 chr4 175676980 175677376 -8611286 + L2 LINE L2 2075 2497 -817 584 217 217 30 chr4 175677446 175677713 -8610949 + L2 LINE L2 2988 3304 -9 26 0 0 0 chr4 175678642 175678668 -8609994 + AT_rich Low_complexity Low_complexity 1 26 0 1896 181 0 6 chr4 175678996 175679310 -8609352 - AluJo SINE Alu 0 312 1 22 0 0 0 chr4 175679511 175679533 -8609129 + AT_rich Low_complexity Low_complexity 1 22 0 2125 129 0 0 chr4 175679533 175679820 -8608842 - AluSx SINE Alu -25 287 1 1497 179 67 74 chr4 175679969 175680400 -8608262 + MSTB1 LTR MaLR 5 432 0 1005 211 48 5 chr4 175680432 175680641 -8608021 - MER58A DNA MER1_type -6 218 1 2179 154 35 37 chr4 175680811 175681240 -8607422 + MSTA LTR MaLR 1 428 0 521 218 19 77 chr4 175681553 175681587 -8607075 + MIR SINE MIR 116 150 -112 1907 104 97 8 chr4 175681587 175681876 -8606786 + AluSq SINE Alu 1 313 0 521 218 19 77 chr4 175681876 175681997 -8606665 + MIR SINE MIR 150 262 0 462 295 217 17 chr4 175682014 175682475 -8606187 - L2 LINE L2 -528 2786 2234 208 256 0 0 chr4 175682527 175682570 -8606092 + L2 LINE L2 3222 3264 -8 23 54 0 0 chr4 175683444 175683481 -8605181 + AT_rich Low_complexity Low_complexity 1 37 0 2224 112 0 0 chr4 175683669 175683974 -8604688 - AluSg SINE Alu -5 305 1 432 293 92 42 chr4 175684317 175684556 -8604106 + L1M2a LINE L1 1 1134 -5964 546 308 124 16 chr4 175685288 175685871 -8602791 + L1M2a LINE L1 1500 2172 -4926 * 3829 142 60 5 chr4 175685869 175688172 -8600490 + L1MA8 LINE L1 3777 6288 -3 767 121 0 17 chr4 175688184 175688300 -8600362 - FRAM SINE Alu -18 158 45 274 379 60 44 chr4 175688922 175689305 -8599357 + L2 LINE L2 2589 2977 -337 2133 93 24 7 chr4 175689385 175689676 -8598986 - AluSc SINE Alu -13 296 1 1877 167 0 3 chr4 175691452 175691745 -8596917 - AluJb SINE Alu -20 292 1 389 277 77 13 chr4 175691745 175691900 -8596762 + L2 LINE L2 2527 2691 -623 504 303 122 16 chr4 175691919 175692223 -8596439 + L2 LINE L2 2804 3139 -174 1169 137 0 0 chr4 175692239 175692407 -8596255 - FRAM SINE Alu -15 161 1 379 287 132 22 chr4 175692423 175692559 -8596103 + L2 LINE L2 3122 3272 0 2288 104 3 0 chr4 175692734 175693031 -8595631 - AluSx SINE Alu -13 299 2 201 161 0 0 chr4 175695166 175695197 -8593465 + (TG)n Simple_repeat Simple_repeat 1 31 0 589 270 20 7 chr4 175695920 175696072 -8592590 + MIR SINE MIR 60 213 -49 21 57 0 0 chr4 175697775 175697810 -8590852 + AT_rich Low_complexity Low_complexity 1 35 0 646 274 66 7 chr4 175698642 175698916 -8589746 + MLT1I LTR MaLR 104 393 -16 266 315 31 39 chr4 175700106 175700236 -8588426 + MIR SINE MIR 134 262 0 252 246 0 0 chr4 175702334 175702403 -8586259 - L1MC/D LINE L1 -2011 5797 5729 292 317 119 0 chr4 175702479 175702580 -8586082 + L2 LINE L2 3193 3305 -8 439 252 18 0 chr4 175702807 175702918 -8585744 + LTR25 LTR ERV1 244 356 -438 908 179 71 5 chr4 175703096 175703308 -8585354 + MER61E LTR ERV1 341 566 -3 317 198 123 0 chr4 175703313 175703394 -8585268 + MER61E-int LTR ERV1 1 91 -6905 4784 188 85 71 chr4 175703398 175704287 -8584375 + MER61E-int LTR ERV1 259 1179 -5817 2795 16 0 0 chr4 175704287 175704596 -8584066 - AluY SINE Alu -2 309 1 4784 188 85 71 chr4 175704596 175705176 -8583486 + MER61E-int LTR ERV1 1179 1749 -5247 349 85 0 0 chr4 175705208 175705255 -8583407 + MER61E-int LTR ERV1 2168 2214 -4877 676 291 0 0 chr4 175705280 175705452 -8583210 + MER61E-int LTR ERV1 2349 2520 -4571 15095 169 48 58 chr4 175705465 175708940 -8579722 + MER61E-int LTR ERV1 2709 6133 -863 1929 132 17 0 chr4 175708940 175709228 -8579434 - AluSx SINE Alu -8 304 12 15095 169 48 58 chr4 175709228 175710040 -8578622 + MER61E-int LTR ERV1 6133 6952 -44 443 167 12 12 chr4 175710143 175710227 -8578435 + LTR25 LTR ERV1 273 356 -438 266 253 0 91 chr4 175710231 175710330 -8578332 + MER61E LTR ERV1 100 189 -380 234 176 0 39 chr4 175710307 175710358 -8578304 + MER61E LTR ERV1 117 165 -404 * 891 188 61 5 chr4 175710409 175710622 -8578040 + MER61E LTR ERV1 341 565 -4 2139 122 3 7 chr4 175712512 175712815 -8575847 - AluSx SINE Alu -10 302 1 21 0 0 0 chr4 175712818 175712839 -8575823 + AT_rich Low_complexity Low_complexity 1 21 0 2499 134 44 0 chr4 175713025 175713434 -8575228 + MSTA LTR MaLR 1 427 -1 943 312 182 38 chr4 175713635 175714398 -8574264 - L3 LINE CR1 -428 1149 277 21 57 0 0 chr4 175715376 175715411 -8573251 + AT_rich Low_complexity Low_complexity 1 35 0 189 94 0 0 chr4 175715449 175715481 -8573181 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 553 262 28 58 chr4 175717822 175718028 -8570634 - MIR SINE MIR -46 216 20 257 319 57 21 chr4 175719409 175719550 -8569112 + L3b LINE CR1 1322 1467 -116 635 298 34 4 chr4 175720417 175720655 -8568007 + L1ME4a LINE L1 5613 5857 -264 25 31 0 0 chr4 175720664 175720696 -8567966 + AT_rich Low_complexity Low_complexity 1 32 0 1986 137 0 11 chr4 175720749 175721068 -8567594 + AluSx SINE Alu 1 316 0 2346 56 29 29 chr4 175723669 175723975 -8564687 + AluY SINE Alu 3 308 -3 1151 239 10 10 chr4 175723984 175724273 -8564389 - MER82 DNA MER2_type -213 440 152 537 83 36 0 chr4 175724377 175724461 -8564201 - L1MA5 LINE L1 -399 5901 5815 249 305 79 79 chr4 175724722 175724867 -8563795 + MIR3 SINE MIR 42 189 -19 2037 157 0 6 chr4 175724867 175725179 -8563483 - AluSx SINE Alu -2 310 1 249 305 79 79 chr4 175725179 175725197 -8563465 + MIR3 SINE MIR 188 205 -3 267 200 0 57 chr4 175725440 175725510 -8563152 + GA-rich Low_complexity Low_complexity 4 69 0 348 43 0 0 chr4 175725521 175725567 -8563095 + (GA)n Simple_repeat Simple_repeat 1 46 0 225 200 25 0 chr4 175726622 175726662 -8562000 - MIR SINE MIR -56 152 112 4407 200 79 45 chr4 175727947 175729288 -8559374 + Charlie1a DNA MER1_type 1 1386 -69 2211 107 0 16 chr4 175729312 175729620 -8559042 - AluSx SINE Alu -9 303 1 4002 189 48 8 chr4 175729696 175730442 -8558220 + MER6 DNA MER2_type 3 787 -78 2220 199 91 6 chr4 175730442 175730915 -8557747 + LTR64 LTR ERVK 1 513 0 4002 189 48 8 chr4 175730915 175730993 -8557669 + MER6 DNA MER2_type 787 860 -5 2148 118 0 7 chr4 175731217 175731523 -8557139 + AluSx SINE Alu 1 304 -8 1149 138 36 58 chr4 175732011 175732235 -8556427 + MER20 DNA MER1_type 1 219 0 417 298 61 17 chr4 175732392 175732573 -8556089 + MIR SINE MIR 45 233 -29 24 32 0 0 chr4 175733588 175733619 -8555043 + AT_rich Low_complexity Low_complexity 1 31 0 279 71 0 0 chr4 175734523 175734565 -8554097 + (GAAA)n Simple_repeat Simple_repeat 1 42 0 267 103 0 0 chr4 175734583 175734622 -8554040 + (GGGA)n Simple_repeat Simple_repeat 1 39 0 203 253 32 42 chr4 175737438 175737533 -8551129 + L2 LINE L2 2400 2493 -821 1818 168 0 7 chr4 175737939 175738236 -8550426 - AluJb SINE Alu -16 296 2 379 301 48 7 chr4 175739815 175739961 -8548701 - MIR SINE MIR -65 197 46 844 282 141 52 chr4 175739977 175740751 -8547911 - L2 LINE L2 -1 3312 2439 243 339 111 18 chr4 175740958 175741129 -8547533 + MIR SINE MIR 13 199 -63 849 114 69 29 chr4 175741367 175741542 -8547120 - MER53 DNA DNA -4 185 4 346 253 0 38 chr4 175742415 175742494 -8546168 - MER5C DNA MER1_type -248 76 1 456 160 0 0 chr4 175793639 175793714 -8494948 + AluJ/FRAM SINE Alu 217 291 -21 826 140 0 29 chr4 175794129 175794265 -8494397 - FLAM_C SINE Alu 0 133 2 183 374 191 17 chr4 175795012 175795660 -8493002 - L2 LINE L2 -558 2756 1996 34 0 0 0 chr4 175795693 175795727 -8492935 + AT_rich Low_complexity Low_complexity 1 34 0 389 293 69 60 chr4 175795739 175796057 -8492605 - L1MEd LINE L1 -5238 881 561 967 101 13 6 chr4 175796057 175796216 -8492446 + L1MA3 LINE L1 6113 6272 -33 225 133 0 50 chr4 175796222 175796282 -8492380 + (TA)n Simple_repeat Simple_repeat 1 57 0 264 59 0 0 chr4 175796291 175796325 -8492337 + (CA)n Simple_repeat Simple_repeat 2 35 0 1942 158 3 7 chr4 175796369 175796673 -8491989 + AluJb SINE Alu 1 303 -9 1316 109 5 26 chr4 175797115 175797308 -8491354 - AluSg/x SINE Alu -20 292 104 21 0 0 0 chr4 175797733 175797754 -8490908 + AT_rich Low_complexity Low_complexity 1 21 0 2342 110 0 0 chr4 175798338 175798639 -8490023 + AluSq SINE Alu 1 301 -12 22 56 0 0 chr4 175798996 175799032 -8489630 + AT_rich Low_complexity Low_complexity 1 36 0 577 207 91 8 chr4 175799484 175799605 -8489057 - FLAM_C SINE Alu -12 131 1 21 0 0 0 chr4 175800015 175800036 -8488626 + AT_rich Low_complexity Low_complexity 1 21 0 2484 80 0 3 chr4 175800494 175800808 -8487854 - AluSq SINE Alu 0 313 1 326 23 0 23 chr4 175801634 175801678 -8486984 + (GGAA)n Simple_repeat Simple_repeat 1 43 0 512 303 121 26 chr4 175802804 175802973 -8485689 + MLT1J2 LTR MaLR 21 173 -277 2130 112 27 0 chr4 175802973 175803267 -8485395 - AluSx SINE Alu -10 302 1 512 303 121 26 chr4 175803267 175803437 -8485225 + MLT1J2 LTR MaLR 173 392 -58 1065 290 92 15 chr4 175803959 175804111 -8484551 - MLT1E LTR MaLR -173 420 281 2242 135 3 0 chr4 175804111 175804422 -8484240 - AluSp SINE Alu -1 312 1 1065 290 92 15 chr4 175804422 175804659 -8484003 - MLT1E LTR MaLR -312 281 1 1106 237 53 0 chr4 175804697 175804942 -8483720 - MIR SINE MIR -3 259 2 1734 159 37 67 chr4 175806056 175806458 -8482204 + MLT1B LTR MaLR 1 390 0 283 245 54 98 chr4 175807377 175807561 -8481101 + MER5A DNA MER1_type 2 188 -1 316 315 51 62 chr4 175808654 175808832 -8479830 - MIR3 SINE MIR -28 180 5 5989 74 3 9 chr4 175811215 175812125 -8476537 - Harlequin LTR ERV1 -4186 2710 1806 * 8274 56 12 27 chr4 175812107 175813284 -8475378 - Harlequin LTR ERV1 -5475 1421 263 2348 103 13 40 chr4 175813279 175813675 -8474987 - Harlequin LTR ERV1 -6511 385 1 * 1625 202 88 26 chr4 175813675 175814105 -8474557 - LTR2B LTR ERV1 0 490 34 288 138 17 0 chr4 175814460 175814518 -8474144 - MLT1F1 LTR MaLR -2 565 507 1268 222 51 32 chr4 175814518 175814888 -8473774 - MSTD LTR MaLR -19 377 1 310 309 67 32 chr4 175815409 175815755 -8472907 + L1ME4a LINE L1 5551 5908 -213 2367 93 0 0 chr4 175816479 175816790 -8471872 + AluY SINE Alu 1 311 0 33 0 0 0 chr4 175816896 175816929 -8471733 + AT_rich Low_complexity Low_complexity 1 33 0 812 270 28 68 chr4 175818035 175818387 -8470275 + LTR16A LTR ERVL 108 445 -5 449 263 51 7 chr4 175818452 175818589 -8470073 + MIR SINE MIR 120 262 0 236 203 13 89 chr4 175819000 175819048 -8469614 - MER5A DNA MER1_type -70 119 77 2436 38 0 10 chr4 175819048 175819379 -8469283 - AluY SINE Alu 0 328 1 236 203 13 89 chr4 175819379 175819408 -8469254 - MER5A DNA MER1_type -112 77 47 21 0 0 0 chr4 175819523 175819544 -8469118 + AT_rich Low_complexity Low_complexity 1 21 0 504 267 73 0 chr4 175819544 175819709 -8468953 + L1MC4a LINE L1 6552 6728 -1080 444 277 15 64 chr4 175819824 175819942 -8468720 - MLT1J2 LTR MaLR -156 294 188 2056 102 3 3 chr4 175819942 175820276 -8468386 - AluSx SINE Alu 0 334 1 444 277 15 64 chr4 175820276 175820358 -8468304 - MLT1J2 LTR MaLR -262 188 103 197 266 0 76 chr4 175820700 175820779 -8467883 + L2 LINE L2 3237 3309 -4 2199 117 3 0 chr4 175821234 175821532 -8467130 - AluSx SINE Alu -13 299 1 245 255 13 27 chr4 175821712 175821861 -8466801 + (TATATG)n Simple_repeat Simple_repeat 2 148 0 191 330 179 9 chr4 175823668 175823780 -8464882 - MIR3 SINE MIR -63 145 15 267 351 131 74 chr4 175823849 175824199 -8464463 - L2 LINE L2 -55 3217 2848 180 257 0 143 chr4 175824449 175824519 -8464143 - L2 LINE L2 -4 3268 3209 257 217 108 25 chr4 175825189 175825309 -8463353 + L1ME4a LINE L1 5976 6105 -16 1873 106 69 11 chr4 175825341 175825616 -8463046 + AluSc SINE Alu 1 291 -18 297 273 119 35 chr4 175825932 175826075 -8462587 - MIR SINE MIR -83 179 25 6665 67 7 108 chr4 175827743 175828905 -8459757 + SVA Other Other 2 1046 -340 477 34 0 0 chr4 175829305 175829364 -8459298 + (TG)n Simple_repeat Simple_repeat 1 59 0 198 0 0 0 chr4 175829449 175829471 -8459191 + (TG)n Simple_repeat Simple_repeat 2 23 0 243 0 0 0 chr4 175829552 175829579 -8459083 + (TG)n Simple_repeat Simple_repeat 2 28 0 264 30 0 0 chr4 175829625 175829658 -8459004 + (TG)n Simple_repeat Simple_repeat 2 34 0 315 0 0 0 chr4 175829700 175829735 -8458927 + (TG)n Simple_repeat Simple_repeat 2 36 0 919 211 17 0 chr4 175830939 175831119 -8457543 + MER5A DNA MER1_type 7 189 0 311 191 119 24 chr4 175831725 175831809 -8456853 + MER94 DNA DNA 9 100 -34 507 296 100 21 chr4 175831833 175832081 -8456581 + L2 LINE L2 2787 3054 -259 2238 114 0 7 chr4 175832104 175832410 -8456252 - AluSx SINE Alu -3 309 6 286 159 29 43 chr4 175832441 175832510 -8456152 - Tigger5 DNA MER2_type 0 2323 2256 278 250 14 0 chr4 175832522 175832594 -8456068 - Tigger5 DNA MER2_type 0 2323 2251 * 302 151 19 0 chr4 175832564 175832617 -8456045 - Tigger5 DNA MER2_type -2268 55 2 618 320 52 4 chr4 175832729 175832960 -8455702 + MIR SINE MIR 21 262 0 181 355 57 40 chr4 175833754 175833878 -8454784 - L2 LINE L2 -5 3267 3142 1167 110 15 50 chr4 175834524 175834724 -8453938 + MER1B DNA MER1_type 147 339 0 561 310 147 31 chr4 175835001 175835539 -8453123 + L2 LINE L2 2426 3025 -288 4011 131 26 3 chr4 175835540 175836233 -8452429 + MER50 LTR ERV1 2 710 -24 21 0 0 0 chr4 175836318 175836339 -8452323 + AT_rich Low_complexity Low_complexity 1 21 0 227 297 62 0 chr4 175836398 175836462 -8452200 + L2 LINE L2 3205 3272 0 405 271 150 104 chr4 175838210 175838315 -8450347 + L1M2 LINE L1 539 638 -6211 25 0 0 0 chr4 175838315 175838340 -8450322 + GC_rich Low_complexity Low_complexity 1 25 0 405 271 150 104 chr4 175838340 175839000 -8449662 + L1M2 LINE L1 638 1385 -5464 24 32 0 0 chr4 175839018 175839049 -8449613 + GC_rich Low_complexity Low_complexity 1 31 0 223 279 4 62 chr4 175839527 175839727 -8448935 + C-rich Low_complexity Low_complexity 1 188 0 849 114 69 29 chr4 175840931 175841106 -8447556 - MER53 DNA DNA -4 185 4 346 253 0 38 chr4 175841980 175842059 -8446603 - MER5C DNA MER1_type -248 76 1 629 225 92 0 chr4 175843588 175843730 -8444932 - MER5B DNA MER1_type -23 155 1 694 221 72 23 chr4 175844336 175844599 -8444063 - LTR37A LTR ERV1 -55 413 95 776 343 41 29 chr4 175845872 175846385 -8442277 + L2 LINE L2 2105 2623 -691 661 260 143 25 chr4 175846400 175846596 -8442066 - MIR SINE MIR -34 228 10 207 316 85 57 chr4 175846581 175846758 -8441904 + L2 LINE L2 2625 2806 -508 * 986 222 0 0 chr4 175846808 175847006 -8441656 - MER58A DNA MER1_type -1 223 26 466 260 81 24 chr4 175847011 175847134 -8441528 + L2 LINE L2 3143 3272 0 1316 225 37 44 chr4 175848768 175848828 -8439834 + L1M4 LINE L1 16 75 -6467 222 37 0 0 chr4 175848828 175848855 -8439807 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1316 225 37 44 chr4 175848855 175849203 -8439459 + L1M4 LINE L1 75 421 -6121 544 240 0 0 chr4 175849228 175849353 -8439309 + L1M4 LINE L1 1085 1209 -5333 379 271 122 14 chr4 175849749 175849970 -8438692 + L1MC4a LINE L1 7171 7415 -393 250 273 0 71 chr4 175851098 175851197 -8437465 + MIR SINE MIR 121 212 -50 1528 140 4 0 chr4 175851323 175851551 -8437111 + AluSg/x SINE Alu 72 300 -10 352 261 165 23 chr4 175851700 175851876 -8436786 + MER5C DNA MER1_type 22 222 -102 269 283 66 9 chr4 175852407 175852513 -8436149 + L2 LINE L2 3159 3270 -43 6884 24 0 0 chr4 175852520 175853314 -8435348 + L1PA3 LINE L1 5355 6148 -7 5745 135 13 19 chr4 175853330 175854838 -8433824 + L1PB1 LINE L1 4653 6150 -1 265 270 52 87 chr4 175854889 175855004 -8433658 + L2 LINE L2 3157 3267 -5 2432 86 0 0 chr4 175856791 175857093 -8431569 + AluSq SINE Alu 1 302 -11 198 0 0 0 chr4 175857093 175857115 -8431547 + (TA)n Simple_repeat Simple_repeat 2 23 0 319 298 10 58 chr4 175857314 175857418 -8431244 - MIR SINE MIR -122 140 42 413 123 92 0 chr4 175857697 175857762 -8430900 - AluSg/x SINE Alu -23 286 216 2169 79 14 0 chr4 175857863 175858141 -8430521 - AluY SINE Alu -29 282 1 3732 236 167 28 chr4 175858142 175861208 -8427454 - L1M1 LINE L1 -3931 3175 11 394 314 44 7 chr4 175861225 175861362 -8427300 - MIR SINE MIR -112 150 9 336 136 136 121 chr4 175862013 175862153 -8426509 - HAL1b LINE L1 -14 1334 1193 267 295 145 32 chr4 175862484 175862829 -8425833 - L1MC/D LINE L1 -642 5522 5271 21 57 0 0 chr4 175862904 175862939 -8425723 + AT_rich Low_complexity Low_complexity 1 35 0 2284 98 0 3 chr4 175864603 175864909 -8423753 + AluSg SINE Alu 1 305 -5 1534 156 78 0 chr4 175865199 175865482 -8423180 - AluJb SINE Alu -7 305 1 23 33 0 0 chr4 175865540 175865570 -8423092 + AT_rich Low_complexity Low_complexity 1 30 0 498 188 94 18 chr4 175865604 175865774 -8422888 - Charlie5 DNA MER1_type 0 2624 2442 1974 107 16 50 chr4 175866159 175866477 -8422185 - AluSx SINE Alu 0 312 6 434 286 88 36 chr4 175866620 175866812 -8421850 + L3 LINE CR1 349 550 -1027 199 277 117 44 chr4 175866911 175867048 -8421614 + L3 LINE CR1 834 980 -597 333 265 51 0 chr4 175867062 175867160 -8421502 - MER5A DNA MER1_type -86 103 1 1828 146 3 36 chr4 175867277 175867585 -8421077 - AluJo SINE Alu -4 308 11 2225 29 29 7 chr4 175868058 175868338 -8420324 + L1PA13 LINE L1 5875 6160 -3 222 312 37 18 chr4 175868452 175868561 -8420101 + MIR SINE MIR 94 204 -58 234 349 96 84 chr4 175869104 175869520 -8419142 + L2 LINE L2 2849 3269 -3 1380 226 73 18 chr4 175870110 175870495 -8418167 - MLT1F1 LTR MaLR -3 564 159 405 195 0 37 chr4 175870514 175870596 -8418066 + MIR3 SINE MIR 128 206 -2 459 360 65 65 chr4 175870950 175871387 -8417275 + L2 LINE L2 2717 3158 -114 2143 87 7 0 chr4 175871387 175871709 -8416953 - AluSc SINE Alu 0 324 1 459 360 65 65 chr4 175871709 175871802 -8416860 + L2 LINE L2 3158 3250 -22 226 333 43 78 chr4 175873024 175873165 -8415497 - MIR3 SINE MIR -71 137 2 821 246 124 104 chr4 175873525 175874263 -8414399 - L2 LINE L2 -8 3305 2528 2343 99 3 3 chr4 175874465 175874769 -8413893 - AluSg SINE Alu -6 304 1 1488 97 5 0 chr4 175875016 175875212 -8413450 + AluSp SINE Alu 116 312 -1 331 305 137 23 chr4 175876085 175876216 -8412446 + L2 LINE L2 3127 3272 0 21 0 0 0 chr4 175876854 175876875 -8411787 + AT_rich Low_complexity Low_complexity 1 21 0 233 276 143 19 chr4 175878704 175878809 -8409853 - L2 LINE L2 -14 3299 3182 1554 304 132 49 chr4 175879521 175879716 -8408946 - L2 LINE L2 -9 3263 3086 2389 97 3 0 chr4 175879716 175880026 -8408636 + AluY SINE Alu 1 311 0 1554 304 132 49 chr4 175880026 175880507 -8408155 - L2 LINE L2 -186 3086 2646 2372 144 43 5 chr4 175880507 175880740 -8407922 - MSTB1 LTR MaLR 0 432 175 204 67 0 0 chr4 175880740 175880770 -8407892 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2372 144 43 5 chr4 175880770 175880952 -8407710 - MSTB1 LTR MaLR -257 175 1 1554 304 132 49 chr4 175880952 175881940 -8406722 - L2 LINE L2 -626 2646 1465 5254 124 22 10 chr4 175882056 175882848 -8405814 + L1MA4 LINE L1 5376 6182 -118 1751 154 0 11 chr4 175882848 175883133 -8405529 + AluJo SINE Alu 15 296 -16 5254 124 22 10 chr4 175883133 175883249 -8405413 + L1MA4 LINE L1 6182 6295 -5 440 288 79 33 chr4 175883920 175884135 -8404527 - MIR SINE MIR -34 228 4 803 301 26 0 chr4 175885822 175886051 -8402611 - MIR SINE MIR -20 242 8 187 378 18 18 chr4 175886565 175886676 -8401986 - L2 LINE L2 -220 3052 2942 186 328 0 35 chr4 175887743 175887835 -8400827 + MIR SINE MIR 17 101 -107 27 29 0 0 chr4 175887835 175887869 -8400793 + AT_rich Low_complexity Low_complexity 1 34 0 449 219 251 0 chr4 175889732 175889902 -8398760 - MIR SINE MIR -30 232 8 538 293 6 19 chr4 175890158 175890315 -8398347 + L2 LINE L2 2943 3097 -216 344 200 248 0 chr4 175890516 175890641 -8398021 + MER103 DNA DNA 11 166 0 2445 59 0 29 chr4 175890802 175891108 -8397554 + AluY SINE Alu 1 297 -14 319 291 33 113 chr4 175891179 175891392 -8397270 - MIR SINE MIR -56 206 11 180 0 0 0 chr4 175892086 175892106 -8396556 + (A)n Simple_repeat Simple_repeat 1 20 0 1854 87 60 0 chr4 175892365 175892630 -8396032 + L1PA11 LINE L1 5893 6173 -1 2408 91 0 0 chr4 175892745 175893042 -8395620 + AluSx SINE Alu 1 297 -15 1562 47 0 0 chr4 175894334 175894527 -8394135 + L1PA5 LINE L1 5959 6151 -3 21 36 0 0 chr4 175895597 175895625 -8393037 + AT_rich Low_complexity Low_complexity 1 28 0 541 243 157 5 chr4 175897632 175897817 -8390845 + LTR50 LTR ERVL 1 213 -582 540 196 50 78 chr4 175897903 175898122 -8390540 + LTR50 LTR ERVL 474 686 -109 359 154 55 109 chr4 175898750 175898860 -8389802 + MLT1J LTR MaLR 1 104 -407 363 240 152 8 chr4 175898895 175899020 -8389642 + MLT1J LTR MaLR 226 368 -143 202 364 80 43 chr4 175900259 175900446 -8388216 - L2 LINE L2 -93 3179 2986 412 235 57 32 chr4 175900869 175900996 -8387666 + MIR SINE MIR 29 157 -51 1225 184 0 62 chr4 175901644 175901733 -8386929 + AluJb SINE Alu 59 152 -160 1868 109 71 0 chr4 175901733 175902000 -8386662 + AluSg SINE Alu 1 286 -24 1225 184 0 62 chr4 175902000 175902166 -8386496 + AluJb SINE Alu 152 298 -14 2074 106 10 3 chr4 175902168 175902482 -8386180 + AluSx SINE Alu 3 312 0 1321 189 91 104 chr4 175902639 175903188 -8385474 + MLT1F LTR MaLR 1 542 0 1551 184 4 0 chr4 175903361 175903611 -8385051 + AluJb SINE Alu 35 285 -27 496 275 89 19 chr4 175904941 175905219 -8383443 + L1ME3A LINE L1 5174 5431 -739 2276 100 0 0 chr4 175905219 175905509 -8383153 - AluSx SINE Alu -22 290 1 496 275 89 19 chr4 175905509 175905727 -8382935 + L1ME3A LINE L1 5431 5704 -466 1930 146 0 0 chr4 175905730 175905998 -8382664 - AluSx SINE Alu -6 306 39 2443 99 17 3 chr4 175906036 175906398 -8382264 - THE1C LTR MaLR 0 375 9 1928 130 4 0 chr4 175906398 175906674 -8381988 - 7SLRNA srpRNA srpRNA -36 284 8 311 243 74 7 chr4 175906731 175906894 -8381768 + L1ME3A LINE L1 5710 5884 -286 319 234 86 78 chr4 175907695 175907951 -8380711 - Charlie7 DNA MER1_type -144 2468 2211 587 287 30 21 chr4 175909392 175909717 -8378945 + MLT1I LTR MaLR 40 400 -9 2221 88 0 3 chr4 175910018 175910326 -8378336 - AluSq SINE Alu 0 307 1 225 309 55 55 chr4 175910503 175910613 -8378049 + L2 LINE L2 3204 3313 0 446 324 56 42 chr4 175910624 175910840 -8377822 + L3 LINE CR1 909 1127 -450 326 364 65 16 chr4 175911278 175911462 -8377200 - MIR SINE MIR -50 212 20 * 429 297 179 29 chr4 175911458 175911731 -8376931 + L3 LINE CR1 1204 1517 -60 1808 160 7 4 chr4 175912627 175912908 -8375754 + AluJo SINE Alu 1 282 -30 216 67 0 0 chr4 175912910 175912940 -8375722 + (GA)n Simple_repeat Simple_repeat 1 30 0 373 176 146 103 chr4 175913119 175913284 -8375378 + MIR SINE MIR 91 262 0 2222 108 0 3 chr4 175917007 175917313 -8371349 - AluSx SINE Alu -7 305 1 899 257 115 41 chr4 175919597 175920084 -8368578 - LTR33A LTR ERVL 0 523 1 27 0 0 0 chr4 175920262 175920289 -8368373 + AT_rich Low_complexity Low_complexity 1 27 0 587 279 4 54 chr4 175920491 175920731 -8367931 - MLT1K LTR MaLR -3 585 358 244 282 69 69 chr4 175920753 175920927 -8367735 - MLT1K LTR MaLR -359 229 56 1056 167 57 142 chr4 175921004 175921321 -8367341 + AluJb SINE Alu 1 290 -12 232 344 7 65 chr4 175921386 175921490 -8367172 + L2 LINE L2 2487 2581 -733 751 204 122 5 chr4 175921490 175921686 -8366976 - MER20 DNA MER1_type 0 219 1 232 344 7 65 chr4 175921686 175921735 -8366927 + L2 LINE L2 2581 2631 -683 243 0 0 0 chr4 175921741 175921768 -8366894 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1658 171 0 0 chr4 175921864 175922109 -8366553 - AluSx SINE Alu -67 245 1 2041 142 0 43 chr4 175922278 175922601 -8366061 - AluSx SINE Alu -3 309 1 204 332 53 91 chr4 175922679 175922866 -8365796 + L2 LINE L2 2872 3051 -221 2712 191 8 48 chr4 175923459 175923997 -8364665 + L1MB8 LINE L1 5542 6049 -129 2093 139 0 3 chr4 175923997 175924306 -8364356 + AluSx SINE Alu 1 308 -4 2712 191 8 48 chr4 175924306 175924431 -8364231 + L1MB8 LINE L1 6049 6178 0 24 0 0 0 chr4 175924747 175924771 -8363891 + AT_rich Low_complexity Low_complexity 1 24 0 184 179 0 26 chr4 175925395 175925434 -8363228 - L2 LINE L2 -7 3306 3269 316 256 59 26 chr4 175925474 175925723 -8362939 + LTR33 LTR ERVL 235 521 0 530 105 0 0 chr4 175925815 175925891 -8362771 + AluS SINE Alu 1 76 -237 354 300 212 12 chr4 175926217 175926387 -8362275 - L2 LINE L2 -179 3093 2890 420 71 0 0 chr4 175927538 175927594 -8361068 + (TTA)n Simple_repeat Simple_repeat 2 57 0 186 239 22 0 chr4 175927788 175927834 -8360828 - L2 LINE L2 -5 3308 3262 201 244 44 0 chr4 175928273 175928318 -8360344 - MIR SINE MIR -90 118 72 1011 146 131 16 chr4 175928756 175929027 -8359635 - MSTA LTR MaLR 0 428 91 21026 162 29 19 chr4 175929097 175930637 -8358025 - L1PA13 LINE L1 -2 7599 6077 2729 93 3 11 chr4 175930637 175931004 -8357658 - THE1B LTR MaLR 0 364 1 21026 162 29 19 chr4 175931004 175933376 -8355286 - L1PA13 LINE L1 -1524 6077 3732 1915 142 53 0 chr4 175933376 175933657 -8355005 - AluSx SINE Alu -16 296 1 21026 162 29 19 chr4 175933657 175935441 -8353221 - L1PA13 LINE L1 -3869 3732 1030 401 156 0 0 chr4 175935441 175935505 -8353157 + AluSp/q SINE Alu 204 267 -36 466 219 195 35 chr4 175935519 175935541 -8353121 + AluJo SINE Alu 97 114 -198 206 81 27 0 chr4 175935541 175935578 -8353084 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 466 219 195 35 chr4 175935578 175935724 -8352938 + AluJo SINE Alu 114 292 -20 234 318 40 8 chr4 175936139 175936265 -8352397 - L1 LINE L1 -1136 5010 4881 22 56 0 0 chr4 175936275 175936311 -8352351 + AT_rich Low_complexity Low_complexity 1 36 0 359 280 10 67 chr4 175936718 175936911 -8351751 - L1ME4a LINE L1 -157 5964 5783 23 33 0 0 chr4 175937374 175937404 -8351258 + AT_rich Low_complexity Low_complexity 1 30 0 2136 110 23 3 chr4 175937855 175938155 -8350507 - AluSx SINE Alu -6 306 1 213 39 0 0 chr4 175938155 175938181 -8350481 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 600 331 26 34 chr4 175938502 175938852 -8349810 - L1ME LINE L1 -3563 2517 2171 1089 209 44 34 chr4 175938990 175939286 -8349376 + MLT1A2 LTR MaLR 3 301 -73 243 187 54 35 chr4 175939624 175939714 -8348948 - L1ME LINE L1 -5119 964 872 725 181 150 12 chr4 175940288 175940448 -8348214 - MER5A DNA MER1_type -6 183 2 188 302 32 0 chr4 175942144 175942207 -8346455 + MIR SINE MIR 77 141 -121 1708 202 14 21 chr4 175942207 175942664 -8345998 - LTR2B LTR ERV1 0 490 1 34264 57 7 7 chr4 175942664 175946860 -8341802 - Harlequin LTR ERV1 0 6896 2699 385 269 19 0 chr4 175996862 175996970 -8291692 - MLT1A1 LTR MaLR -255 110 1 2192 121 7 0 chr4 175997442 175997749 -8290913 - AluSx SINE Alu 0 312 4 731 227 81 35 chr4 175999519 175999779 -8288883 + MLT1C LTR MaLR 191 462 -5 2254 131 0 0 chr4 176000328 176000640 -8288022 - AluSx SINE Alu 0 312 1 860 295 67 52 chr4 176001864 176002521 -8286141 + MER115 DNA AcHobo 27 693 0 567 43 0 0 chr4 176003481 176003551 -8285111 + (GAAA)n Simple_repeat Simple_repeat 3 72 0 267 235 24 12 chr4 176004085 176004170 -8284492 + (CATATA)n Simple_repeat Simple_repeat 3 88 0 426 79 0 0 chr4 176004205 176004268 -8284394 + (CA)n Simple_repeat Simple_repeat 1 63 0 461 205 57 49 chr4 176005139 176005261 -8283401 - L2 LINE L2 -1 3312 3190 220 306 18 63 chr4 176007102 176007213 -8281449 + MIR SINE MIR 23 128 -80 209 352 119 26 chr4 176007350 176007543 -8281119 + MIR SINE MIR 46 256 -6 361 308 82 14 chr4 176008432 176008578 -8280084 - MER91A DNA MER1_type -40 156 1 580 258 62 59 chr4 176008815 176009026 -8279636 + MIR SINE MIR 43 256 -6 371 287 75 35 chr4 176009046 176009220 -8279442 + MIR3 SINE MIR 19 199 -9 2245 114 0 0 chr4 176009733 176010022 -8278640 + AluSg SINE Alu 1 289 -21 194 303 135 22 chr4 176010454 176010543 -8278119 + L3 LINE CR1 462 560 -1017 550 275 118 78 chr4 176010568 176010942 -8277720 + L3 LINE CR1 1178 1566 -11 1681 170 31 17 chr4 176011197 176011486 -8277176 - AluJo SINE Alu -19 293 1 2094 136 13 3 chr4 176011494 176011804 -8276858 - AluSq SINE Alu 0 313 1 809 112 0 0 chr4 176013350 176013475 -8275187 - L1MA8 LINE L1 -5 6286 6162 408 353 15 7 chr4 176015798 176015934 -8272728 - MIR SINE MIR -76 186 50 476 276 92 41 chr4 176016279 176016475 -8272187 - MIR SINE MIR -18 244 39 192 263 8 98 chr4 176016492 176016625 -8272037 + L2 LINE L2 3152 3272 0 3522 107 23 12 chr4 176017022 176017211 -8271451 + LTR43 LTR ERV1 25 211 -391 1870 128 7 7 chr4 176017211 176017493 -8271169 + AluSx SINE Alu 16 297 -15 3522 107 23 12 chr4 176017493 176017874 -8270788 + LTR43 LTR ERV1 211 601 -1 29 28 0 0 chr4 176018970 176019006 -8269656 + AT_rich Low_complexity Low_complexity 1 36 0 7482 182 127 19 chr4 176019189 176020773 -8267889 + MER52A LTR ERV1 1 1755 0 180 111 0 0 chr4 176020997 176021024 -8267638 + (GA)n Simple_repeat Simple_repeat 1 27 0 226 315 0 0 chr4 176021516 176021589 -8267073 + GA-rich Low_complexity Low_complexity 2 74 0 992 224 42 125 chr4 176022184 176022830 -8265832 - L1MC4 LINE L1 -744 7217 6626 646 308 119 18 chr4 176022980 176023474 -8265188 - L1M4 LINE L1 -3444 2702 2159 307 301 90 39 chr4 176023735 176023891 -8264771 - HAL1b LINE L1 -444 904 741 1748 167 89 24 chr4 176024026 176024255 -8264407 - MSTD LTR MaLR 0 396 132 4904 141 96 61 chr4 176024255 176025479 -8263183 + MER11A LTR ERVK 1 1266 0 1748 167 89 24 chr4 176025479 176025621 -8263041 - MSTD LTR MaLR -264 132 1 349 296 0 9 chr4 176025625 176025733 -8262929 - HAL1b LINE L1 -809 539 433 302 342 74 42 chr4 176025748 176025938 -8262724 - HAL1b LINE L1 -962 386 191 1285 180 38 52 chr4 176027459 176027803 -8260859 - MER44D DNA MER2_type 0 609 1 2294 89 10 0 chr4 176028645 176028937 -8259725 + AluSx SINE Alu 1 295 -17 226 186 0 0 chr4 176029262 176029305 -8259357 - tRNA-Phe-TTC tRNA tRNA -33 43 1 25 31 0 0 chr4 176029694 176029726 -8258936 + AT_rich Low_complexity Low_complexity 1 32 0 2293 84 14 0 chr4 176029733 176030030 -8258632 - AluY SINE Alu -8 303 3 21 36 0 0 chr4 176030834 176030862 -8257800 + AT_rich Low_complexity Low_complexity 1 28 0 1478 258 32 55 chr4 176031760 176032477 -8256185 - L2 LINE L2 -1 3312 2603 724 136 15 8 chr4 176032882 176033014 -8255648 + L1MD3 LINE L1 7746 7878 -117 2672 82 94 10 chr4 176033024 176033437 -8255225 + LTR7 LTR ERV1 1 448 -2 10187 122 32 39 chr4 176033439 176035942 -8252720 + HERVH LTR ERV1 1 2298 -5415 1922 130 0 44 chr4 176036043 176036188 -8252474 + L1MA4 LINE L1 5955 6105 -195 2455 147 51 10 chr4 176036188 176036597 -8252065 + MSTB LTR MaLR 1 426 0 1922 130 0 44 chr4 176036597 176036813 -8251849 + L1MA4 LINE L1 6105 6300 0 23 33 0 0 chr4 176037708 176037738 -8250924 + AT_rich Low_complexity Low_complexity 1 30 0 189 224 163 75 chr4 176037855 176038002 -8250660 - MIR SINE MIR -14 248 89 2802 227 29 12 chr4 176039221 176039975 -8248687 - L1ME1 LINE L1 -8 6227 5461 3675 226 29 26 chr4 176039979 176041511 -8247151 - L1ME1 LINE L1 -2869 3346 1831 339 65 0 0 chr4 176044115 176044161 -8244501 + (TG)n Simple_repeat Simple_repeat 1 46 0 988 256 28 12 chr4 176046332 176046586 -8242076 + MLT1G LTR MaLR 11 268 -322 302 331 100 16 chr4 176046818 176047069 -8241593 - L2 LINE L2 -564 2750 2479 455 274 63 48 chr4 176047121 176047373 -8241289 - MARNA DNA Mariner -309 277 22 2047 107 3 34 chr4 176047793 176048091 -8240571 + AluSx SINE Alu 2 290 -22 243 0 0 0 chr4 176048098 176048125 -8240537 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 384 40 0 0 chr4 176048238 176048288 -8240374 + (CA)n Simple_repeat Simple_repeat 2 51 0 595 254 15 8 chr4 176049518 176049652 -8239010 + AluJo SINE Alu 2 136 -176 378 0 0 0 chr4 176049789 176049831 -8238831 + (ATG)n Simple_repeat Simple_repeat 3 44 0 294 329 18 18 chr4 176050023 176050187 -8238475 - MLT1K LTR MaLR -405 183 20 203 238 0 0 chr4 176050288 176050330 -8238332 + MIR SINE MIR 3 44 -218 466 202 20 10 chr4 176052657 176052756 -8235906 - MER94 DNA DNA -21 113 14 208 407 125 5 chr4 176052792 176053008 -8235654 + L2 LINE L2 3022 3263 -9 655 294 63 5 chr4 176053316 176053537 -8235125 - MIR SINE MIR 0 262 29 188 200 20 0 chr4 176053546 176053596 -8235066 + CT-rich Low_complexity Low_complexity 1 51 0 201 188 29 43 chr4 176054135 176054204 -8234458 + (CAGAGA)n Simple_repeat Simple_repeat 4 71 0 2977 75 0 27 chr4 176055682 176056054 -8232608 - THE1B LTR MaLR 0 364 3 11184 89 37 54 chr4 176056056 176057157 -8231505 - THE1B-int LTR MaLR 0 1580 514 1825 143 0 11 chr4 176057157 176057429 -8231233 - AluSg SINE Alu -3 307 39 11184 89 37 54 chr4 176057429 176057935 -8230727 - THE1B-int LTR MaLR -1066 514 1 2895 102 0 0 chr4 176057935 176058297 -8230365 - THE1B LTR MaLR 0 364 3 333 0 0 0 chr4 176058527 176058564 -8230098 + (CA)n Simple_repeat Simple_repeat 2 38 0 3256 114 20 4 chr4 176059753 176060208 -8228454 - MER1A DNA MER1_type 0 529 68 231 343 0 9 chr4 176060670 176060775 -8227887 + LTR67 LTR ERVL 440 543 -14 792 125 27 18 chr4 176061369 176061481 -8227181 - AluSq/x SINE Alu -199 114 2 513 338 70 33 chr4 176061509 176061811 -8226851 + L2 LINE L2 2967 3279 -34 194 380 39 81 chr4 176065114 176065422 -8223240 - L2 LINE L2 -29 3243 2949 237 333 167 0 chr4 176066089 176066227 -8222435 - MIR3 SINE MIR -5 203 43 1487 250 100 11 chr4 176066600 176067040 -8221622 + MLT1E LTR MaLR 113 591 -2 533 291 137 21 chr4 176067468 176067891 -8220771 + MLT1J2 LTR MaLR 9 448 -2 190 130 0 43 chr4 176068554 176068600 -8220062 + (TA)n Simple_repeat Simple_repeat 2 45 0 230 152 0 0 chr4 176068604 176068650 -8220012 + LTR66 LTR ERVL 394 439 -171 * 341 233 41 0 chr4 176068642 176068715 -8219947 + MER21B LTR ERV1 15 90 -773 3148 237 52 50 chr4 176068737 176069580 -8219082 + MER21B LTR ERV1 19 863 0 238 233 206 0 chr4 176070567 176070640 -8218022 - L2 LINE L2 0 3272 3185 22 35 0 0 chr4 176071651 176071680 -8216982 + AT_rich Low_complexity Low_complexity 1 29 0 221 344 54 0 chr4 176071737 176071830 -8216832 - L2 LINE L2 -208 3105 3008 226 282 75 119 chr4 176071855 176072174 -8216488 - L2 LINE L2 -920 2394 2090 447 318 54 8 chr4 176072337 176072466 -8216196 + L2 LINE L2 3134 3268 -4 29 0 0 0 chr4 176072549 176072578 -8216084 + AT_rich Low_complexity Low_complexity 1 29 0 243 203 0 0 chr4 176073077 176073136 -8215526 + GA-rich Low_complexity Low_complexity 2 60 0 455 267 142 36 chr4 176074004 176074229 -8214433 - L1ME LINE L1 -335 5786 5538 2322 93 0 13 chr4 176074822 176075135 -8213527 - AluSc SINE Alu 0 309 1 499 291 25 45 chr4 176075572 176075771 -8212891 + MIR SINE MIR 13 207 -55 2039 153 0 0 chr4 176075984 176076292 -8212370 - AluSx SINE Alu -4 308 1 448 292 87 32 chr4 176077920 176078139 -8210523 + MIR SINE MIR 32 262 0 1877 182 67 17 chr4 176078243 176078600 -8210062 + THE1C LTR MaLR 1 375 0 367 343 139 5 chr4 176078600 176078801 -8209861 + MIR SINE MIR 14 241 -21 440 262 125 13 chr4 176078950 176079318 -8209344 - LTR16A LTR ERVL 0 450 1 218 284 30 30 chr4 176079590 176079657 -8209005 + L2 LINE L2 3234 3300 -13 356 237 0 21 chr4 176081617 176081710 -8206952 - LTR67 LTR ERVL -9 548 458 206 228 11 54 chr4 176082699 176082791 -8205871 + T-rich Low_complexity Low_complexity 2 89 0 184 298 53 64 chr4 176084569 176084663 -8203999 + L2 LINE L2 2686 2778 -536 251 277 64 35 chr4 176084787 176084928 -8203734 + L2 LINE L2 2921 3065 -207 1963 114 0 7 chr4 176086065 176086338 -8202324 - AluSq SINE Alu -6 307 37 211 333 40 27 chr4 176088032 176088107 -8200555 - MIR SINE MIR -56 152 77 1391 228 19 33 chr4 176088188 176088547 -8200115 - MLT1A1 LTR MaLR -11 354 1 2020 143 7 0 chr4 176089019 176089326 -8199336 - AluSx SINE Alu 0 312 4 4125 127 0 22 chr4 176089848 176090519 -8198143 + HERVH LTR ERV1 2340 2995 -4718 * 13387 107 11 38 chr4 176090498 176092565 -8196097 + HERVH LTR ERV1 3140 5149 -2564 1161 128 128 0 chr4 176092566 176092761 -8195901 + HERVH LTR ERV1 5600 5819 -1894 2462 96 48 13 chr4 176092761 176093138 -8195524 + HERVH LTR ERV1 7324 7713 0 2665 89 119 10 chr4 176093138 176093542 -8195120 + LTR7 LTR ERV1 1 448 -2 241 136 0 0 chr4 176093573 176093617 -8195045 + L1MC3 LINE L1 7741 7784 -1 2147 81 95 0 chr4 176093721 176094006 -8194656 - AluSx SINE Alu 0 312 1 1684 199 0 3 chr4 176094435 176094732 -8193930 + AluJo SINE Alu 2 297 -15 2252 135 0 0 chr4 176096386 176096698 -8191964 + AluSx SINE Alu 1 312 0 572 269 39 62 chr4 176097806 176098063 -8190599 + MIR SINE MIR 12 262 0 222 118 0 0 chr4 176099228 176099262 -8189400 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 2184 126 0 0 chr4 176099264 176099574 -8189088 - AluY SINE Alu -1 310 1 2045 96 6 60 chr4 176100432 176100746 -8187916 + AluSq SINE Alu 1 297 -16 243 0 0 0 chr4 176103050 176103077 -8185585 + (CA)n Simple_repeat Simple_repeat 1 27 0 3419 215 39 29 chr4 176103743 176104116 -8184546 - L1ME1 LINE L1 -5 6161 5793 2338 99 3 10 chr4 176104116 176104428 -8184234 - AluSq SINE Alu -3 310 1 3419 215 39 29 chr4 176104428 176105395 -8183267 - L1ME1 LINE L1 -373 5793 4804 505 213 74 8 chr4 176105383 176105579 -8183083 - L1M LINE L1 -830 5316 5152 * 1498 203 21 45 chr4 176105672 176106090 -8182572 - MLT1F LTR MaLR 0 542 135 1765 166 3 11 chr4 176108226 176108535 -8180127 + AluJo SINE Alu 1 307 0 2285 101 0 3 chr4 176108541 176108837 -8179825 + AluSc SINE Alu 1 295 -14 280 128 0 0 chr4 176109617 176109656 -8179006 + L2 LINE L2 3265 3303 -10 1435 201 50 23 chr4 176109881 176110180 -8178482 - AluJb SINE Alu -5 307 1 201 39 0 0 chr4 176110885 176110911 -8177751 + (TCC)n Simple_repeat Simple_repeat 1 26 0 278 246 31 15 chr4 176111536 176111601 -8177061 + L2 LINE L2 3180 3245 -27 23 33 0 0 chr4 176111884 176111914 -8176748 + AT_rich Low_complexity Low_complexity 1 30 0 194 250 29 29 chr4 176112233 176112301 -8176361 + MIR SINE MIR 8 75 -187 9337 83 16 1 chr4 176112464 176113865 -8174797 - L1P LINE L1 -1683 4463 3043 1978 133 71 3 chr4 176116304 176116642 -8172020 + MER46B DNA MER2_type 1 236 0 354 322 87 0 chr4 176116893 176117008 -8171654 - L2 LINE L2 0 3313 3189 374 319 72 12 chr4 176117581 176117747 -8170915 + MIR SINE MIR 42 217 -45 1701 163 61 0 chr4 176118237 176118514 -8170148 + AluJo SINE Alu 1 294 -18 21 71 0 0 chr4 176118710 176118752 -8169910 + AT_rich Low_complexity Low_complexity 1 42 0 2271 108 0 3 chr4 176118911 176119207 -8169455 - AluSq SINE Alu -18 295 1 1840 163 107 8 chr4 176119419 176119794 -8168868 + MLT2D LTR ERVL 3 414 0 237 377 90 0 chr4 176120035 176120157 -8168505 + L3 LINE CR1 645 777 -800 494 324 139 8 chr4 176120389 176120627 -8168035 + L3 LINE CR1 1153 1421 -156 522 342 30 10 chr4 176120756 176120955 -8167707 - MIR SINE MIR -49 213 11 445 188 0 0 chr4 176120971 176121056 -8167606 - MER58B DNA MER1_type -9 332 248 834 285 104 18 chr4 176121191 176121756 -8166906 + MLT1G LTR MaLR 1 589 -1 503 267 16 2 chr4 176121873 176122009 -8166653 + MLT1J1 LTR MaLR 31 165 -244 555 105 11 11 chr4 176122180 176122275 -8166387 + (TCCA)n Simple_repeat Simple_repeat 1 95 0 623 283 50 35 chr4 176122291 176122549 -8166113 - L2 LINE L2 -9 3304 3043 351 0 0 0 chr4 176124322 176124361 -8164301 + (TG)n Simple_repeat Simple_repeat 2 40 0 2205 129 0 0 chr4 176126151 176126461 -8162201 + AluSx SINE Alu 1 310 -2 254 299 19 9 chr4 176128359 176128466 -8160196 - L1MC5 LINE L1 -99 7862 7755 28 61 0 0 chr4 176128517 176128566 -8160096 + AT_rich Low_complexity Low_complexity 1 49 0 586 268 45 6 chr4 176129067 176129224 -8159438 + MIR3 SINE MIR 37 199 -9 23 33 0 0 chr4 176130523 176130553 -8158109 + AT_rich Low_complexity Low_complexity 1 30 0 590 192 69 59 chr4 176130553 176130756 -8157906 + L1MC5 LINE L1 7133 7337 -624 2169 130 18 6 chr4 176130757 176131087 -8157575 - MER1B DNA MER1_type -1 336 3 3044 103 2 33 chr4 176131102 176131438 -8157224 - PABL_B LTR ERV1 0 667 322 183 42 0 0 chr4 176131438 176131462 -8157200 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1836 124 88 0 chr4 176131464 176131615 -8157047 - AluSx SINE Alu -15 297 161 180 0 0 0 chr4 176131615 176131635 -8157027 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1836 124 88 0 chr4 176131635 176131756 -8156906 - AluSx SINE Alu -151 161 1 3044 103 2 33 chr4 176131756 176131900 -8156762 - PABL_B LTR ERV1 -346 321 199 1625 197 8 40 chr4 176132625 176133001 -8155661 + MLT1A1 LTR MaLR 1 364 -1 1415 227 60 23 chr4 176133112 176133553 -8155109 - MLT1E2 LTR MaLR -24 602 56 2439 71 3 3 chr4 176133824 176134134 -8154528 + AluY SINE Alu 1 310 -1 348 333 117 24 chr4 176134134 176134383 -8154279 + L2 LINE L2 2706 2977 -337 201 191 24 0 chr4 176134384 176134426 -8154236 + CT-rich Low_complexity Low_complexity 5 47 0 241 320 57 16 chr4 176134527 176134649 -8154013 - L2 LINE L2 -1 3312 3186 2825 158 12 27 chr4 176134795 176135001 -8153661 - LTR60 LTR ERV1 0 586 378 2088 112 63 20 chr4 176135001 176135350 -8153312 + THE1B LTR MaLR 1 364 0 2825 158 12 27 chr4 176135350 176135499 -8153163 - LTR60 LTR ERV1 -208 378 228 2366 125 11 6 chr4 176135499 176135859 -8152803 + THE1B LTR MaLR 1 362 -2 2825 158 12 27 chr4 176135859 176136097 -8152565 - LTR60 LTR ERV1 -358 228 1 419 305 133 8 chr4 176136155 176136283 -8152379 + L2 LINE L2 3129 3272 0 2920 62 0 0 chr4 176136701 176137055 -8151607 - THE1A LTR MaLR 0 355 2 2104 139 7 0 chr4 176137173 176137482 -8151180 - AluSx SINE Alu -1 311 1 634 314 5 5 chr4 176137793 176137997 -8150665 + L2 LINE L2 2823 3026 -287 336 228 43 43 chr4 176138081 176138173 -8150489 + L2 LINE L2 3222 3313 0 410 268 105 13 chr4 176140158 176140311 -8148351 + MIR SINE MIR 91 257 -5 24149 70 5 4 chr4 176140594 176146742 -8141920 - L1PA5 LINE L1 0 6154 11 197 310 76 62 chr4 176148671 176148816 -8139846 + L2 LINE L2 3165 3311 -2 27 49 0 0 chr4 176148885 176148926 -8139736 + AT_rich Low_complexity Low_complexity 1 41 0 887 292 68 35 chr4 176148971 176149519 -8139143 - L1MC4a LINE L1 -1919 5889 5324 783 325 143 42 chr4 176150020 176150356 -8138306 - L1MC4a LINE L1 -1438 4708 4407 273 29 0 0 chr4 176150356 176150390 -8138272 + (CA)n Simple_repeat Simple_repeat 2 35 0 783 325 143 42 chr4 176150390 176150708 -8137954 - L1MC4a LINE L1 -1739 4407 4122 4039 193 17 1 chr4 176150708 176151430 -8137232 + MER44D DNA MER2_type 1 605 0 783 325 143 42 chr4 176151430 176151910 -8136752 - L1MC4a LINE L1 -2024 4122 3692 1977 199 81 96 chr4 176151910 176152574 -8136088 + MLT1E1 LTR MaLR 1 654 0 783 325 143 42 chr4 176152574 176152759 -8135903 - L1MC4a LINE L1 -2454 3692 3254 216 0 0 0 chr4 176153159 176153183 -8135479 + (T)n Simple_repeat Simple_repeat 1 24 0 930 147 6 0 chr4 176155004 176155161 -8133501 + L1PA16 LINE L1 6004 6161 -5 306 333 51 8 chr4 176156058 176156175 -8132487 + L2 LINE L2 3147 3268 -4 256 217 0 0 chr4 176156914 176156960 -8131702 + MIR SINE MIR 211 256 -6 351 308 75 0 chr4 176158735 176158842 -8129820 + MIR SINE MIR 112 226 -36 3939 105 2 0 chr4 176158852 176159405 -8129257 + MER41A LTR ERV1 1 554 0 1856 197 15 43 chr4 176159786 176160248 -8128414 - LTR2 LTR ERV1 0 449 1 306 0 0 0 chr4 176160670 176160704 -8127958 + (TG)n Simple_repeat Simple_repeat 2 35 0 728 341 23 55 chr4 176161152 176161589 -8127073 + L1M3a LINE L1 1 423 -5532 4107 242 49 34 chr4 176162481 176164824 -8123838 + L1M3f LINE L1 539 3355 -2973 890 366 22 51 chr4 176164835 176165464 -8123198 + L1PA16 LINE L1 789 1399 -6175 363 329 7 26 chr4 176165467 176165619 -8123043 + L1PA16 LINE L1 2157 2305 -5269 25 31 0 0 chr4 176166371 176166403 -8122259 + AT_rich Low_complexity Low_complexity 1 32 0 13115 217 48 33 chr4 176166444 176171131 -8117531 + L1PA16 LINE L1 2231 6905 -699 2059 127 0 0 chr4 176171131 176171458 -8117204 + AluSx SINE Alu 1 327 0 13115 217 48 33 chr4 176171458 176172076 -8116586 + L1PA16 LINE L1 6905 7512 -92 6348 166 57 7 chr4 176172187 176173467 -8115195 + L1 LINE L1 4047 5390 -756 297 340 10 10 chr4 176223472 176223572 -8065090 - MIR SINE MIR -116 146 47 21 57 0 0 chr4 176224052 176224087 -8064575 + AT_rich Low_complexity Low_complexity 1 35 0 1809 167 0 20 chr4 176224219 176224525 -8064137 - AluJb SINE Alu -12 300 1 330 232 11 11 chr4 176225056 176225151 -8063511 + L1ME3 LINE L1 4685 4779 -1367 724 215 54 156 chr4 176225157 176225544 -8063118 + MER39 LTR ERV1 13 560 -147 2174 97 7 3 chr4 176225544 176225854 -8062808 + AluY SINE Alu 1 311 0 724 215 54 156 chr4 176225854 176225989 -8062673 + MER39 LTR ERV1 560 707 0 1643 244 103 46 chr4 176226018 176227241 -8061421 + L1ME3 LINE L1 4799 6091 -71 285 295 169 18 chr4 176227723 176227889 -8060773 + MIR SINE MIR 20 210 -52 811 197 0 7 chr4 176228167 176228309 -8060353 + FRAM SINE Alu 1 140 -36 1001 218 42 50 chr4 176228511 176228823 -8059839 - MLT1D LTR MaLR -141 326 3 310 257 19 9 chr4 176228825 176228930 -8059732 + L1M4 LINE L1 4624 4729 -1417 1006 215 128 47 chr4 176228960 176229258 -8059404 - LTR68 LTR ERV1 0 740 419 2274 102 79 15 chr4 176229278 176229620 -8059042 + THE1B LTR MaLR 1 364 0 410 264 24 24 chr4 176229759 176229884 -8058778 - MER5A DNA MER1_type -59 130 6 337 270 127 69 chr4 176231173 176231230 -8057432 - MIR SINE MIR -14 248 196 2070 113 0 7 chr4 176231230 176231551 -8057111 - AluSx SINE Alu 0 319 1 337 270 127 69 chr4 176231551 176231681 -8056981 - MIR SINE MIR -66 196 49 355 327 159 26 chr4 176231888 176232240 -8056422 + L2 LINE L2 2216 2614 -700 2910 146 53 0 chr4 176232696 176233182 -8055480 + MER41E LTR ERV1 1 512 0 327 263 73 89 chr4 176233206 176233385 -8055277 + L2 LINE L2 3097 3272 0 2164 113 7 13 chr4 176233565 176233874 -8054788 + AluSg SINE Alu 1 307 -3 29 78 0 0 chr4 176237023 176237087 -8051575 + AT_rich Low_complexity Low_complexity 1 64 0 227 229 38 76 chr4 176237097 176237202 -8051460 - L1ME LINE L1 -455 5666 5566 339 258 58 42 chr4 176237240 176237276 -8051386 - L1ME LINE L1 -643 5478 5444 2175 100 7 3 chr4 176237276 176237575 -8051087 + AluSp SINE Alu 1 300 -13 339 258 58 42 chr4 176237575 176237658 -8051004 - L1ME LINE L1 -677 5444 5357 1889 148 156 5 chr4 176239640 176239826 -8048836 - MSTA LTR MaLR 0 428 271 363 44 0 0 chr4 176239826 176239871 -8048791 + (GA)n Simple_repeat Simple_repeat 1 45 0 1889 148 156 5 chr4 176239871 176240056 -8048606 - MSTA LTR MaLR -157 271 1 2684 10 0 0 chr4 176241398 176241691 -8046971 + AluYb8 SINE Alu 1 293 -25 1915 148 0 0 chr4 176242016 176242334 -8046328 + AluYb8 SINE Alu 1 318 0 283 256 56 0 chr4 176242788 176242878 -8045784 - MLT1I LTR MaLR -273 136 42 461 132 9 142 chr4 176243213 176243319 -8045343 - Tigger7 DNA MER2_type 0 2487 2396 * 1105 195 51 0 chr4 176243318 176243513 -8045149 - Tigger7 DNA MER2_type -2222 265 61 2082 128 0 3 chr4 176243601 176243899 -8044763 - AluSx SINE Alu -15 297 1 373 328 14 27 chr4 176244570 176244726 -8043936 + MIR SINE MIR 24 176 -65 1896 136 27 10 chr4 176245496 176245790 -8042872 - AluSx SINE Alu -13 299 1 381 59 59 0 chr4 176246865 176246933 -8041729 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 2179 116 0 10 chr4 176247560 176247863 -8040799 - AluSq SINE Alu -13 300 1 399 297 63 31 chr4 176248664 176248775 -8039887 + L1ME4a LINE L1 5678 5784 -337 2175 130 58 9 chr4 176248775 176249122 -8039540 - THE1B LTR MaLR 0 364 1 399 297 63 31 chr4 176249122 176249232 -8039430 + L1ME4a LINE L1 5784 5906 -215 24 53 0 0 chr4 176249267 176249305 -8039357 + AT_rich Low_complexity Low_complexity 1 38 0 344 344 50 42 chr4 176249412 176249749 -8038913 + L1ME4a LINE L1 5569 5908 -213 30 69 0 0 chr4 176249827 176249885 -8038777 + AT_rich Low_complexity Low_complexity 1 58 0 22 35 0 0 chr4 176249946 176249975 -8038687 + AT_rich Low_complexity Low_complexity 1 29 0 1461 152 50 3 chr4 176251243 176251540 -8037122 + L1MDa LINE L1 1951 2261 -4279 278 229 125 0 chr4 176252317 176252413 -8036249 + L1M4 LINE L1 4466 4573 -1573 945 175 31 83 chr4 176253004 176253278 -8035384 + AluJb SINE Alu 76 312 0 1571 166 29 16 chr4 176253299 176253613 -8035049 - L1MA6 LINE L1 -59 6241 5924 3101 139 75 25 chr4 176253613 176254174 -8034488 + MER6A DNA MER2_type 1 589 -16 3231 160 22 36 chr4 176254192 176255021 -8033641 - L1MA6 LINE L1 -370 5921 5099 2249 178 50 14 chr4 176255026 176255509 -8033153 - L1MA6 LINE L1 -1712 4434 3935 429 271 125 0 chr4 176255845 176255989 -8032673 - MIR SINE MIR -27 235 74 283 275 39 126 chr4 176256043 176256225 -8032437 - MIR SINE MIR -72 190 25 310 299 67 8 chr4 176257143 176257277 -8031385 + L1ME4a LINE L1 5779 5920 -201 315 71 0 0 chr4 176257279 176257321 -8031341 + (CA)n Simple_repeat Simple_repeat 2 43 0 2235 323 104 13 chr4 176257383 176258451 -8030211 + ERVL LTR ERVL 1492 2627 -2858 2098 281 51 34 chr4 176258495 176259261 -8029401 + ERVL LTR ERVL 2748 3526 -2238 524 317 67 29 chr4 176259279 176259487 -8029175 + ERVL LTR ERVL 3671 3886 -1878 1268 327 63 21 chr4 176259489 176260141 -8028521 + ERVL LTR ERVL 4755 5433 -331 30 0 0 0 chr4 176260149 176260179 -8028483 + AT_rich Low_complexity Low_complexity 1 30 0 275 195 208 0 chr4 176260557 176260634 -8028028 + LTR50 LTR ERVL 7 99 -696 197 192 0 19 chr4 176260635 176260687 -8027975 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 240 290 109 11 chr4 176260693 176260797 -8027865 + LTR33A LTR ERVL 80 178 -345 416 264 0 0 chr4 176261041 176261128 -8027534 - MER82 DNA MER2_type -566 87 1 2287 212 24 65 chr4 176261151 176261736 -8026926 + MER82 DNA MER2_type 93 653 0 423 226 226 0 chr4 176261736 176261873 -8026789 - L1ME3A LINE L1 -56 6114 5947 230 210 32 0 chr4 176261887 176261949 -8026713 + LTR50 LTR ERVL 723 786 -9 391 275 243 0 chr4 176261981 176262170 -8026492 - L2 LINE L2 -337 2977 2743 3005 111 62 53 chr4 176262950 176263554 -8025108 + MER4B LTR ERV1 1 779 0 23 0 0 0 chr4 176263659 176263682 -8024980 + AT_rich Low_complexity Low_complexity 1 23 0 6093 192 45 15 chr4 176263682 176265066 -8023596 + L1MA8 LINE L1 13 1437 -4065 2213 137 16 22 chr4 176265067 176265319 -8023343 - THE1B LTR MaLR -1 363 112 5632 145 29 32 chr4 176265319 176266393 -8022269 + MER11C LTR ERVK 1 1071 0 2213 137 16 22 chr4 176266393 176266505 -8022157 - THE1B LTR MaLR -252 112 1 6555 160 35 42 chr4 176266505 176268237 -8020425 - THE1B-int LTR MaLR 0 1580 3 2564 121 3 3 chr4 176268239 176268603 -8020059 - THE1B LTR MaLR 0 364 1 470 108 0 0 chr4 176268611 176268676 -8019986 - THE1B LTR MaLR -299 65 1 14871 191 24 39 chr4 176268678 176270982 -8017680 + L1MA8 LINE L1 1435 3773 -2700 2283 101 0 3 chr4 176270982 176271280 -8017382 - AluSg SINE Alu -13 297 1 14871 191 24 39 chr4 176271280 176273795 -8014867 + L1MA8 LINE L1 3773 6175 -298 272 144 78 78 chr4 176273831 176273883 -8014779 + L1MB4 LINE L1 6091 6145 -35 2048 96 57 0 chr4 176273883 176274165 -8014497 + AluY SINE Alu 1 298 -13 272 144 78 78 chr4 176274165 176274202 -8014460 + L1MB4 LINE L1 6144 6180 0 51 31 0 0 chr4 176274216 176274281 -8014381 + AT_rich Low_complexity Low_complexity 1 65 0 419 322 77 39 chr4 176274312 176274675 -8013987 - L1ME LINE L1 -362 5759 5383 381 244 0 12 chr4 176275292 176275378 -8013284 + L2 LINE L2 3229 3313 0 1127 205 38 117 chr4 176275498 176276045 -8012617 + LTR22 LTR ERVK 2 505 -4 449 211 18 28 chr4 176276090 176276199 -8012463 - MIR SINE MIR -15 247 140 408 304 9 0 chr4 176276206 176276318 -8012344 + L2 LINE L2 3199 3311 -2 273 273 116 0 chr4 176277640 176277761 -8010901 + MLT1L LTR MaLR 454 588 -27 302 130 0 0 chr4 176278090 176278136 -8010526 - MIR SINE MIR -77 185 140 387 291 138 20 chr4 176278572 176278775 -8009887 - MIR SINE MIR -32 230 4 1826 214 113 11 chr4 176278775 176279233 -8009429 + MLT1D LTR MaLR 1 505 0 219 167 0 0 chr4 176279534 176279576 -8009086 + GA-rich Low_complexity Low_complexity 1 42 0 4002 77 24 9 chr4 176281524 176281579 -8007083 + MER41A LTR ERV1 1 54 -500 1744 142 63 27 chr4 176281579 176281910 -8006752 + MER61A LTR ERV1 1 343 0 4002 77 24 9 chr4 176281910 176282400 -8006262 + MER41A LTR ERV1 54 554 0 197 222 99 49 chr4 176284118 176284199 -8004463 - MER5C DNA MER1_type -239 85 1 503 244 30 71 chr4 176284207 176284404 -8004258 - MER20 DNA MER1_type 0 219 31 205 226 0 38 chr4 176285151 176285204 -8003458 + (CATG)n Simple_repeat Simple_repeat 3 53 0 277 111 0 0 chr4 176285797 176285842 -8002820 + L1PA6 LINE L1 6107 6151 -3 274 262 122 56 chr4 176286020 176286127 -8002535 - MIR SINE MIR -90 172 59 288 0 0 0 chr4 176286144 176286176 -8002486 + (TG)n Simple_repeat Simple_repeat 2 33 0 1208 175 52 0 chr4 176286182 176286393 -8002269 + LTR8 LTR ERV1 1 222 -469 1143 121 0 0 chr4 176286395 176286544 -8002118 - AluSq SINE Alu -160 153 5 274 343 109 17 chr4 176286630 176286805 -8001857 - L2 LINE L2 -687 2627 2437 1506 199 83 26 chr4 176286865 176287215 -8001447 + MLT2D LTR ERVL 1 342 -55 405 0 0 0 chr4 176287215 176287260 -8001402 + (CA)n Simple_repeat Simple_repeat 2 46 0 1506 199 83 26 chr4 176287260 176287320 -8001342 + MLT2D LTR ERVL 342 397 0 407 346 38 0 chr4 176287499 176287632 -8001030 - MIR SINE MIR -108 154 17 219 259 47 35 chr4 176287703 176287788 -8000874 - MIR SINE MIR -11 251 166 1457 63 0 0 chr4 176287997 176288188 -8000474 + L1PA4 LINE L1 5962 6152 -3 1094 251 145 36 chr4 176288424 176288954 -7999708 + L2 LINE L2 1912 2499 -815 935 302 76 47 chr4 176288955 176289579 -7999083 + L2 LINE L2 2653 3306 -7 27 73 0 0 chr4 176289699 176289754 -7998908 + AT_rich Low_complexity Low_complexity 1 55 0 499 275 100 50 chr4 176290016 176290553 -7998109 - L1ME4a LINE L1 -292 5829 5254 188 262 0 0 chr4 176291534 176291576 -7997086 + L2 LINE L2 2746 2787 -527 735 316 24 0 chr4 176291795 176292048 -7996614 - MIR SINE MIR 0 262 4 1566 174 7 33 chr4 176292129 176292404 -7996258 + AluSx SINE Alu 5 272 -40 1840 152 140 54 chr4 176292465 176292894 -7995768 + MER31B LTR ERV1 1 466 0 3873 244 64 14 chr4 176293256 176294929 -7993733 + L1M3f LINE L1 101 1848 -4107 8981 208 28 15 chr4 176294935 176297318 -7991344 + L1M3f LINE L1 1954 4364 -1964 24 32 0 0 chr4 176297318 176297349 -7991313 + AT_rich Low_complexity Low_complexity 1 31 0 512 255 93 34 chr4 176297349 176297664 -7990998 + L1M4 LINE L1 4045 4409 -1737 938 193 183 47 chr4 176297677 176297978 -7990684 - MLT1A1 LTR MaLR 0 365 24 207 204 23 0 chr4 176298105 176298149 -7990513 + (AGATG)n Simple_repeat Simple_repeat 1 45 0 22 56 0 0 chr4 176298514 176298550 -7990112 + AT_rich Low_complexity Low_complexity 1 36 0 292 380 81 5 chr4 176300027 176300248 -7988414 - L3 LINE CR1 -985 592 355 222 189 0 0 chr4 176301117 176301154 -7987508 + (CA)n Simple_repeat Simple_repeat 2 38 0 2182 168 6 6 chr4 176301204 176301562 -7987100 + MLT1A1 LTR MaLR 1 457 0 2456 118 22 3 chr4 176303677 176304034 -7984628 - THE1B LTR MaLR 0 364 1 2367 70 0 20 chr4 176304515 176304817 -7983845 - AluY SINE Alu -15 296 1 228 294 84 17 chr4 176305342 176305461 -7983201 - MIR SINE MIR -7 255 129 3272 59 0 7 chr4 176305932 176306358 -7982304 + L1PA8 LINE L1 5750 6172 0 265 252 97 19 chr4 176306646 176306749 -7981913 + MER5B DNA MER1_type 17 127 -51 333 306 44 78 chr4 176306932 176307203 -7981459 - L2 LINE L2 -581 2733 2472 23 33 0 0 chr4 176307954 176307984 -7980678 + AT_rich Low_complexity Low_complexity 1 30 0 380 292 81 14 chr4 176308016 176308225 -7980437 + L1ME LINE L1 5527 5749 -372 289 258 45 11 chr4 176308711 176308800 -7979862 + LTR67 LTR ERVL 118 209 -348 222 335 96 29 chr4 176309160 176309399 -7979263 + L2 LINE L2 2807 3061 -211 208 249 45 119 chr4 176309929 176310130 -7978532 + L2 LINE L2 3124 3309 -4 203 276 102 71 chr4 176311021 176311148 -7977514 - MIR SINE MIR -42 220 90 589 234 117 0 chr4 176311401 176311555 -7977107 + MER63B DNA MER1_type 1 172 -264 2194 107 7 0 chr4 176312837 176313135 -7975527 - AluSg SINE Alu -10 300 1 324 338 30 8 chr4 176313371 176313537 -7975125 + MIR SINE MIR 26 190 -56 199 269 102 65 chr4 176316054 176316162 -7972500 + L2 LINE L2 3160 3271 -1 246 81 0 0 chr4 176316173 176316210 -7972452 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 211 262 119 24 chr4 176317460 176317544 -7971118 + MIR SINE MIR 109 200 -62 376 171 11 11 chr4 176317891 176317979 -7970683 + MER53 DNA DNA 101 188 -1 21 0 0 0 chr4 176318839 176318860 -7969802 + AT_rich Low_complexity Low_complexity 1 21 0 367 279 70 70 chr4 176319828 176320000 -7968662 - MIR3 SINE MIR -5 203 32 270 182 0 0 chr4 176320038 176320104 -7968558 + CT-rich Low_complexity Low_complexity 1 66 0 477 319 32 49 chr4 176320122 176320307 -7968355 + MIR SINE MIR 7 188 -74 22 35 0 0 chr4 176320387 176320416 -7968246 + AT_rich Low_complexity Low_complexity 1 29 0 271 294 15 0 chr4 176320659 176320727 -7967935 + MIR SINE MIR 49 117 -145 978 272 71 16 chr4 176320984 176321050 -7967612 + MER58B DNA MER1_type 1 62 -2358 2199 112 3 0 chr4 176321050 176321353 -7967309 - AluSq SINE Alu -9 304 1 978 272 71 16 chr4 176321353 176321595 -7967067 + MER58B DNA MER1_type 62 326 -15 2008 88 4 0 chr4 176321881 176322132 -7966530 + AluSp SINE Alu 44 295 -18 771 164 0 8 chr4 176322708 176322842 -7965820 - FLAM_C SINE Alu -10 133 1 265 390 77 12 chr4 176322879 176323048 -7965614 + L2 LINE L2 3089 3268 -4 197 333 0 0 chr4 176324710 176324761 -7963901 + L2 LINE L2 3217 3267 -5 255 307 7 93 chr4 176324778 176324918 -7963744 + MIR3 SINE MIR 66 193 -15 19703 180 44 20 chr4 176324928 176328292 -7960370 + L1PA13 LINE L1 1069 4641 -2173 1941 163 0 0 chr4 176328292 176328593 -7960069 + AluSx SINE Alu 1 301 -11 19703 180 44 20 chr4 176328593 176330821 -7957841 + L1PA13 LINE L1 4641 6814 0 252 187 24 0 chr4 176330792 176330881 -7957781 + L1M LINE L1 5926 6019 -929 * 914 202 197 50 chr4 176332737 176333131 -7955531 + MLT1E2 LTR MaLR 7 622 -2 2508 148 4 31 chr4 176333693 176334146 -7954516 - MER65A LTR ERV1 -2 443 3 309 348 54 32 chr4 176334160 176334381 -7954281 + HAL1b LINE L1 509 734 -614 401 285 151 27 chr4 176335042 176335228 -7953434 + MLT1I LTR MaLR 83 291 -118 399 232 12 0 chr4 176335450 176335532 -7953130 - MER58C DNA MER1_type -6 209 127 2221 126 0 3 chr4 176336531 176336840 -7951822 - AluSx SINE Alu -4 308 1 243 196 43 109 chr4 176337080 176337172 -7951490 + MLT1I LTR MaLR 6 91 -318 832 296 83 50 chr4 176337186 176337835 -7950827 + L2 LINE L2 2621 3309 -4 717 339 74 3 chr4 176337862 176338213 -7950449 - MLT1I LTR MaLR -30 379 4 371 271 12 0 chr4 176338401 176338486 -7950176 - MER5A DNA MER1_type -93 96 11 222 263 144 25 chr4 176338570 176338688 -7949974 + L2 LINE L2 3141 3272 0 1844 179 18 84 chr4 176339028 176339470 -7949192 - MLT2D LTR ERVL -1 413 1 1239 218 63 18 chr4 176340496 176340876 -7947786 - MLT2C1 LTR ERVL 0 397 1 1933 142 11 25 chr4 176340901 176341260 -7947402 + L1MA4 LINE L1 5947 6300 0 459 203 14 108 chr4 176341341 176341489 -7947173 + MIR SINE MIR 114 247 -15 238 255 61 41 chr4 176341565 176341663 -7946999 - MIR SINE MIR -67 141 42 2520 67 0 3 chr4 176341990 176342302 -7946360 - AluY SINE Alu 0 311 1 2833 10 0 0 chr4 176342317 176342627 -7946035 - AluYa5 SINE Alu -1 310 1 214 231 0 0 chr4 176343434 176343473 -7945189 + polypyrimidine Low_complexity Low_complexity 3 41 0 1587 154 40 9 chr4 176344062 176344453 -7944209 + LTR45B LTR ERV1 3 489 0 583 278 88 10 chr4 176344899 176345104 -7943558 + MIR SINE MIR 41 261 -1 735 255 99 5 chr4 176345433 176345645 -7943017 + MIR SINE MIR 10 241 -21 209 382 73 27 chr4 176346573 176346683 -7941979 - L2 LINE L2 -15 3257 3143 2232 113 3 7 chr4 176346974 176347284 -7941378 + AluSq SINE Alu 1 309 -4 205 372 41 6 chr4 176347977 176348149 -7940513 + L2 LINE L2 2858 3035 -237 287 221 179 29 chr4 176348431 176348571 -7940091 - L1MEd LINE L1 -5419 700 540 484 207 18 9 chr4 176348987 176349098 -7939564 - L2 LINE L2 -12 3301 3190 188 325 75 17 chr4 176349250 176349370 -7939292 + L2 LINE L2 3170 3296 -17 344 298 106 14 chr4 176351918 176352059 -7936603 + MIR SINE MIR 53 206 -56 23 0 0 0 chr4 176352707 176352730 -7935932 + AT_rich Low_complexity Low_complexity 1 23 0 1513 227 57 17 chr4 176353943 176354419 -7934243 + L1ME3 LINE L1 4285 4779 -1367 870 226 60 110 chr4 176354425 176354925 -7933737 + MER39 LTR ERV1 13 707 0 1706 242 103 46 chr4 176354954 176356177 -7932485 + L1ME3 LINE L1 4799 6091 -71 243 203 109 0 chr4 176356331 176356395 -7932267 + L1ME3 LINE L1 6071 6141 -21 1917 275 52 29 chr4 176356414 176357146 -7931516 + L1ME3A LINE L1 5417 6165 -5 223 336 82 18 chr4 176357535 176357645 -7931017 - MIR3 SINE MIR -2 206 90 189 74 0 0 chr4 176357649 176357676 -7930986 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 5661 140 26 8 chr4 176357688 176358666 -7929996 - L1MA8 LINE L1 -7 6284 5290 4985 284 102 25 chr4 176358670 176359705 -7928957 - L2 LINE L2 -26 3287 2333 1759 179 10 52 chr4 176359705 176360112 -7928550 + MLT1B LTR MaLR 1 390 0 4985 284 102 25 chr4 176360112 176361286 -7927376 - L2 LINE L2 -980 2333 918 3075 196 47 27 chr4 176361286 176361996 -7926666 + L1MC4a LINE L1 7085 7808 0 253 217 0 0 chr4 176362017 176362086 -7926576 - L2 LINE L2 -2399 915 847 899 289 26 57 chr4 176362095 176362444 -7926218 + MER69 DNA AcHobo 16 353 -873 696 326 65 21 chr4 176362487 176362778 -7925884 - L2 LINE L2 -2943 371 68 1993 169 167 2 chr4 176363785 176364217 -7924445 - MLT1D LTR MaLR -2 503 1 447 340 163 19 chr4 176364705 176365117 -7923545 + L3 LINE CR1 930 1400 -177 509 298 94 30 chr4 176365977 176366212 -7922450 - MER102a DNA MER1_type 0 330 81 1861 160 38 0 chr4 176366520 176366833 -7921829 - THE1B LTR MaLR -37 327 3 9931 114 50 8 chr4 176366837 176368353 -7920309 - THE1B-int LTR MaLR 0 1580 1 1707 120 0 0 chr4 176368353 176368586 -7920076 - THE1B LTR MaLR 0 364 132 1989 122 3 14 chr4 176369097 176369392 -7919270 + AluSx SINE Alu 1 292 -20 185 146 21 0 chr4 176371321 176371369 -7917293 + (CA)n Simple_repeat Simple_repeat 2 50 0 566 165 0 0 chr4 176371964 176372055 -7916607 - AluJ/FLAM SINE Alu -221 91 1 9026 203 29 8 chr4 176372490 176375284 -7913378 + L1PA16 LINE L1 3138 5985 -181 233 250 14 0 chr4 176375440 176375512 -7913150 + L1P LINE L1 3138 3210 -2936 927 134 6 23 chr4 176375530 176375702 -7912960 + L1PA16 LINE L1 5998 6166 0 244 43 21 43 chr4 176376210 176376257 -7912405 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 218 261 14 14 chr4 176377054 176377123 -7911539 + CT-rich Low_complexity Low_complexity 3 71 0 23 0 0 0 chr4 176377123 176377146 -7911516 + AT_rich Low_complexity Low_complexity 1 23 0 1941 283 131 36 chr4 176377171 176378434 -7910228 - HAL1 LINE L1 -30 2477 1096 247 322 42 14 chr4 176378578 176378721 -7909941 + L1PA15 LINE L1 1379 1525 -982 423 309 73 0 chr4 176378983 176379148 -7909514 + HAL1 LINE L1 144 320 -2187 930 181 104 22 chr4 176379155 176379337 -7909325 + AluJo SINE Alu 5 201 -111 21 0 0 0 chr4 176381373 176381394 -7907268 + AT_rich Low_complexity Low_complexity 1 21 0 2109 128 0 0 chr4 176381484 176381780 -7906882 + AluSc SINE Alu 1 296 -13 2383 68 0 16 chr4 176382724 176383033 -7905629 + AluY SINE Alu 1 304 -7 207 0 0 0 chr4 176383040 176383063 -7905599 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 180 111 0 0 chr4 176383074 176383101 -7905561 + (T)n Simple_repeat Simple_repeat 1 27 0 180 0 0 0 chr4 176383955 176383975 -7904687 + (A)n Simple_repeat Simple_repeat 1 20 0 24 32 0 0 chr4 176384019 176384050 -7904612 + AT_rich Low_complexity Low_complexity 1 31 0 307 73 36 0 chr4 176386313 176386337 -7902325 + (TAGA)n Simple_repeat Simple_repeat 1 81 0 307 73 36 0 chr4 176386337 176386392 -7902270 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 429 311 86 70 chr4 176386927 176387458 -7901204 + L2 LINE L2 2692 3296 -17 201 333 0 0 chr4 176388255 176388309 -7900353 - MIR SINE MIR -113 149 96 256 367 17 17 chr4 176388477 176388597 -7900065 - MIR SINE MIR -126 136 17 15792 196 31 22 chr4 176388764 176390842 -7897820 + L1PA15 LINE L1 1576 3633 -2532 369 0 0 0 chr4 176390842 176390883 -7897779 + (CA)n Simple_repeat Simple_repeat 2 42 0 225 0 0 0 chr4 176390882 176390907 -7897755 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 15792 196 31 22 chr4 176390883 176393303 -7895359 + L1PA15 LINE L1 3633 6093 -72 277 364 67 14 chr4 176393407 176393616 -7895046 + L2 LINE L2 2199 2418 -896 923 51 0 56 chr4 176393781 176393959 -7894703 + (TA)n Simple_repeat Simple_repeat 1 168 0 1849 85 4 0 chr4 176394024 176394270 -7894392 - AluSp SINE Alu 0 313 67 1847 158 11 52 chr4 176394439 176394805 -7893857 + MER61C LTR ERV1 84 434 0 261 370 82 48 chr4 176394816 176395192 -7893470 + L2 LINE L2 2869 3257 -15 190 381 21 42 chr4 176395976 176396165 -7892497 - L3 LINE CR1 -59 1518 1334 22 0 0 0 chr4 176396879 176396901 -7891761 + AT_rich Low_complexity Low_complexity 1 22 0 1715 227 61 54 chr4 176397335 176397891 -7890771 - L1ME1 LINE L1 -88 6147 5588 411 219 67 0 chr4 176397888 176398007 -7890655 - L1ME1 LINE L1 -4222 2174 2048 * 995 301 83 22 chr4 176398035 176398777 -7889885 - L1ME1 LINE L1 -4393 2003 1053 1405 189 85 90 chr4 176398779 176399224 -7889438 - MSTB2 LTR MaLR 0 457 15 789 277 62 35 chr4 176399239 176399759 -7888903 - L1ME1 LINE L1 -5223 1173 640 637 330 33 40 chr4 176399855 176400309 -7888353 - L1ME1 LINE L1 -5887 509 59 443 133 0 0 chr4 176400697 176400772 -7887890 + MADE1 DNA Mariner 5 79 -1 672 221 62 29 chr4 176401371 176401579 -7887083 + Charlie2 DNA MER1_type 69 283 -2499 351 222 135 16 chr4 176401732 176401858 -7886804 + Charlie2 DNA MER1_type 2517 2657 -205 1831 144 40 3 chr4 176404036 176404335 -7884327 - AluJb SINE Alu -2 310 1 232 207 17 0 chr4 176404483 176404541 -7884121 + (TA)n Simple_repeat Simple_repeat 2 60 0 401 325 64 32 chr4 176404611 176404799 -7883863 - L3 LINE CR1 -755 822 629 1674 195 25 22 chr4 176405288 176405652 -7883010 + MLT1A1 LTR MaLR 1 365 0 2271 91 0 3 chr4 176406146 176406444 -7882218 - AluSg1 SINE Alu -12 297 1 1398 133 5 0 chr4 176406582 176406792 -7881870 + AluSp SINE Alu 103 313 0 492 62 0 0 chr4 176407793 176407857 -7880805 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 403 286 55 39 chr4 176407892 176408017 -7880645 - MER5A DNA MER1_type -1 188 58 2197 144 48 50 chr4 176408017 176408475 -7880187 + MSTB2 LTR MaLR 1 457 0 403 286 55 39 chr4 176408475 176408531 -7880131 - MER5A DNA MER1_type -131 58 4 251 277 39 100 chr4 176408778 176408908 -7879754 + MLT1J2 LTR MaLR 263 384 -66 210 37 0 0 chr4 176410653 176410680 -7877982 + (GA)n Simple_repeat Simple_repeat 2 28 0 195 42 0 0 chr4 176411700 176411724 -7876938 + (T)n Simple_repeat Simple_repeat 1 24 0 1271 146 10 10 chr4 176411735 176411940 -7876722 - AluJb SINE Alu -102 210 6 21 36 0 0 chr4 176411980 176412008 -7876654 + AT_rich Low_complexity Low_complexity 1 28 0 257 231 0 15 chr4 176412426 176412491 -7876171 + (CA)n Simple_repeat Simple_repeat 2 65 0 273 359 117 26 chr4 176412686 176412951 -7875711 - L2 LINE L2 -462 2852 2564 501 337 95 36 chr4 176414298 176414719 -7873943 + L2 LINE L2 2019 2464 -850 2318 66 23 3 chr4 176415395 176415696 -7872966 - AluSg SINE Alu -3 307 1 244 279 207 58 chr4 176415738 176415946 -7872716 + MIR SINE MIR 7 245 -17 246 116 0 0 chr4 176416140 176416183 -7872479 + (TG)n Simple_repeat Simple_repeat 1 43 0 372 22 0 0 chr4 176416536 176416581 -7872081 + (TG)n Simple_repeat Simple_repeat 1 45 0 319 349 0 0 chr4 176416672 176416778 -7871884 - MIR SINE MIR -2 260 155 259 204 0 0 chr4 176416824 176416873 -7871789 + MER2 DNA MER2_type 297 345 0 * 334 207 69 4 chr4 176416873 176416944 -7871718 - MER2 DNA MER2_type -161 78 6 786 218 6 6 chr4 176416960 176417116 -7871546 - MIR SINE MIR -105 157 2 1961 94 69 0 chr4 176418254 176418564 -7870098 + AluSp SINE Alu 1 329 0 265 307 92 69 chr4 176418856 176419410 -7869252 - L1MEd LINE L1 -5128 991 425 594 103 0 0 chr4 176419444 176419531 -7869131 + (TTCC)n Simple_repeat Simple_repeat 4 90 0 424 336 65 23 chr4 176422614 176422831 -7865831 - MIR SINE MIR -31 231 6 248 322 69 29 chr4 176423758 176423932 -7864730 + MIR SINE MIR 29 209 -53 300 53 0 0 chr4 176424349 176424387 -7864275 + (TG)n Simple_repeat Simple_repeat 2 39 0 66 14 0 0 chr4 176424837 176424910 -7863752 + AT_rich Low_complexity Low_complexity 1 73 0 324 365 65 10 chr4 176426799 176426999 -7861663 + MIR SINE MIR 4 214 -48 996 138 0 66 chr4 176428123 176428181 -7860481 - MLT1B LTR MaLR 0 390 330 3259 120 29 29 chr4 176428181 176428705 -7859957 + MER1A DNA MER1_type 4 527 0 996 138 0 66 chr4 176428705 176428827 -7859835 - MLT1B LTR MaLR -60 330 222 494 182 20 0 chr4 176428824 176428923 -7859739 - MLT1B LTR MaLR -289 101 1 * 191 300 119 50 chr4 176429501 176429661 -7859001 + L2 LINE L2 2239 2409 -905 1803 175 57 3 chr4 176429868 176430200 -7858462 + MLT1A1 LTR MaLR 1 350 -15 1489 122 36 0 chr4 176430285 176430506 -7858156 + MER30 DNA MER1_type 2 230 0 2659 23 0 7 chr4 176430529 176430834 -7857828 - AluY SINE Alu -8 303 1 1833 170 0 7 chr4 176431461 176431755 -7856907 - AluSx SINE Alu -20 292 1 3328 250 34 9 chr4 176432411 176433439 -7855223 - L1 LINE L1 -2775 3371 2318 2705 192 7 14 chr4 176433437 176434026 -7854636 + L1 LINE L1 3385 3969 -2177 * 1761 199 44 3 chr4 176434046 176434387 -7854275 + MLT1A1 LTR MaLR 11 365 0 654 314 20 4 chr4 176435893 176436141 -7852521 + ERVL LTR ERVL 4916 5167 -597 392 355 11 5 chr4 176436218 176436407 -7852255 + ERVL LTR ERVL 5143 5332 -153 340 353 84 26 chr4 176437185 176437375 -7851287 - MIR SINE MIR -54 208 8 720 227 6 11 chr4 176437455 176437631 -7851031 - MER5B DNA MER1_type 0 178 4 28 48 0 0 chr4 176437769 176437811 -7850851 + AT_rich Low_complexity Low_complexity 1 42 0 588 281 61 53 chr4 176437933 176438022 -7850640 + MIR SINE MIR 12 99 -163 2829 13 0 0 chr4 176438022 176438336 -7850326 - AluYb8 SINE Alu -4 314 1 588 281 61 53 chr4 176438336 176438492 -7850170 + MIR SINE MIR 99 259 -3 1289 173 47 76 chr4 176438811 176439112 -7849550 - AluJo SINE Alu -20 292 1 2322 57 7 0 chr4 176439969 176440249 -7848413 + AluY SINE Alu 26 307 -4 2574 239 52 24 chr4 176440525 176440613 -7848049 - L1ME2 LINE L1 0 6164 6080 1797 185 39 26 chr4 176440613 176440997 -7847665 - MLT1B LTR MaLR 0 390 2 2574 239 52 24 chr4 176440997 176442022 -7846640 - L1ME2 LINE L1 -84 6080 5022 378 286 84 8 chr4 176442025 176442144 -7846518 - MIR SINE MIR -94 168 41 201 121 0 0 chr4 176442530 176442563 -7846099 + (T)n Simple_repeat Simple_repeat 1 33 0 779 148 60 22 chr4 176442702 176442884 -7845778 - MER53 DNA DNA 0 189 1 560 309 0 6 chr4 176443788 176443953 -7844709 + MIR SINE MIR 68 231 -31 1303 279 143 20 chr4 176444151 176444865 -7843797 + L1ME3A LINE L1 5368 6169 -1 1306 188 116 0 chr4 176445256 176445533 -7843129 - AluJo SINE Alu -3 309 1 266 260 26 13 chr4 176446115 176446192 -7842470 - MER116 DNA Mariner 0 80 3 321 136 49 62 chr4 176446416 176446497 -7842165 + MADE1 DNA Mariner 1 80 0 27 29 0 0 chr4 176447837 176447871 -7840791 + AT_rich Low_complexity Low_complexity 1 34 0 215 341 35 35 chr4 176448180 176448265 -7840397 + MER5A DNA MER1_type 10 94 -95 351 287 134 13 chr4 176448305 176448462 -7840200 + MER5B DNA MER1_type 2 177 -1 853 205 0 0 chr4 176448544 176448719 -7839943 + FRAM SINE Alu 1 170 0 658 294 53 29 chr4 176448779 176449184 -7839478 + L1ME1 LINE L1 5280 5691 -430 635 275 24 0 chr4 176450106 176450273 -7838389 + L1ME1 LINE L1 5967 6137 -29 23 33 0 0 chr4 176451596 176451626 -7837036 + AT_rich Low_complexity Low_complexity 1 30 0 1193 172 17 4 chr4 176452245 176452477 -7836185 + L1MB3 LINE L1 5935 6169 -14 267 152 0 0 chr4 176452480 176452526 -7836136 + (TA)n Simple_repeat Simple_repeat 1 46 0 549 171 38 0 chr4 176452838 176452943 -7835719 - L1PB4 LINE L1 -8 6148 6040 228 346 30 20 chr4 176452944 176453045 -7835617 + L2 LINE L2 3212 3313 0 263 284 37 0 chr4 176453140 176453221 -7835441 + MIR SINE MIR 92 175 -87 193 309 0 18 chr4 176453279 176453334 -7835328 + MIR SINE MIR 196 249 -13 191 313 31 0 chr4 176453572 176453636 -7835026 - L2 LINE L2 0 3272 3207 278 297 136 58 chr4 176455236 176455391 -7833271 + MIR SINE MIR 28 194 -68 2728 172 50 59 chr4 176455576 176456206 -7832456 + MER67C LTR ERV1 4 629 -81 2204 85 3 20 chr4 176456206 176456500 -7832162 - AluSg SINE Alu -21 289 1 2728 172 50 59 chr4 176456500 176456549 -7832113 + MER67C LTR ERV1 629 677 -33 674 160 8 15 chr4 176456553 176456683 -7831979 + MER72 LTR ERV1 5 133 -589 576 143 20 0 chr4 176456683 176456781 -7831881 + MER50 LTR ERV1 1 100 -634 2367 104 14 1 chr4 176456786 176457333 -7831329 + LTR9 LTR ERV1 1 612 0 * 3032 152 73 41 chr4 176457333 176457910 -7830752 + MER50 LTR ERV1 116 711 -23 879 157 38 0 chr4 176457954 176458113 -7830549 + MER49 LTR ERV1 130 294 -629 * 3018 193 9 47 chr4 176458099 176458837 -7829825 + MER4D LTR ERV1 62 877 -26 27 0 0 0 chr4 176458837 176458864 -7829798 + AT_rich Low_complexity Low_complexity 1 27 0 247 105 0 0 chr4 176458871 176458909 -7829753 + MER67C LTR ERV1 673 710 0 553 283 24 54 chr4 176458909 176458971 -7829691 + MIR SINE MIR 6 68 -194 2012 117 33 3 chr4 176458971 176459271 -7829391 + AluSc SINE Alu 1 309 0 553 283 24 54 chr4 176459271 176459413 -7829249 + MIR SINE MIR 68 204 -58 228 149 0 0 chr4 176459413 176459460 -7829202 + (TA)n Simple_repeat Simple_repeat 2 48 0 2189 92 3 3 chr4 176460824 176461132 -7827530 - AluY SINE Alu 0 308 1 2183 125 16 48 chr4 176461689 176462065 -7826597 - THE1B LTR MaLR 0 364 1 2548 93 11 11 chr4 176462065 176462431 -7826231 - THE1B-int LTR MaLR 0 1580 1215 * 3856 95 8 66 chr4 176462429 176463053 -7825609 - THE1B-int LTR MaLR -992 588 1 1863 144 50 19 chr4 176463055 176463417 -7825245 - THE1C LTR MaLR -2 373 1 319 366 22 0 chr4 176464307 176464441 -7824221 + MIR3 SINE MIR 71 207 -1 2175 104 10 0 chr4 176464445 176464733 -7823929 + AluSg SINE Alu 1 291 -19 1098 273 74 32 chr4 176464971 176465374 -7823288 + LTR16C LTR ERVL 71 490 -1 2314 106 0 0 chr4 176465691 176465994 -7822668 + AluSg SINE Alu 4 306 -4 2162 117 3 3 chr4 176465998 176466296 -7822366 + AluSx SINE Alu 1 298 -14 1676 198 82 26 chr4 176466765 176467180 -7821482 - MLT1C LTR MaLR 0 467 30 1545 287 120 30 chr4 176467234 176467792 -7820870 + MER45C DNA AcHobo 1 608 -345 238 231 0 0 chr4 176467856 176467924 -7820738 + MER45C DNA AcHobo 886 953 0 216 351 97 0 chr4 176468701 176468815 -7819847 - MIR SINE MIR -73 189 65 21 36 0 0 chr4 176468873 176468901 -7819761 + AT_rich Low_complexity Low_complexity 1 28 0 1863 137 41 4 chr4 176469269 176469391 -7819271 + AluSx SINE Alu 1 117 -197 438 15 29 29 chr4 176469391 176469459 -7819203 + (TAAA)n Simple_repeat Simple_repeat 2 69 0 1863 137 41 4 chr4 176469459 176469640 -7819022 + AluSx SINE Alu 117 314 0 255 189 0 0 chr4 176470273 176470326 -7818336 + L1MC4 LINE L1 6651 6703 -1339 293 289 92 7 chr4 176470353 176470495 -7818167 + MIR SINE MIR 82 235 -27 1973 103 48 0 chr4 176470667 176470940 -7817722 + AluY SINE Alu 1 286 -25 414 0 0 0 chr4 176470945 176470991 -7817671 + (TA)n Simple_repeat Simple_repeat 2 47 0 21 0 0 0 chr4 176471305 176471326 -7817336 + AT_rich Low_complexity Low_complexity 1 21 0 318 278 81 69 chr4 176472813 176472986 -7815676 + MIR SINE MIR 10 184 -78 765 296 95 40 chr4 176473268 176473431 -7815231 + L1ME3A LINE L1 4104 4257 -1889 1740 181 3 3 chr4 176473431 176473730 -7814932 - AluJo SINE Alu -13 299 1 765 296 95 40 chr4 176473730 176474655 -7814007 + L1ME3A LINE L1 4257 5276 -870 * 813 214 36 178 chr4 176474654 176474844 -7813818 + L1ME3A LINE L1 5646 5861 -309 1674 98 0 9 chr4 176474844 176475069 -7813593 + AluSg/x SINE Alu 83 305 -5 813 214 36 178 chr4 176475069 176475468 -7813194 + L1ME3A LINE L1 5861 6151 -19 360 304 47 7 chr4 176475503 176475651 -7813011 + L1ME3A LINE L1 5176 5329 -817 1979 137 0 0 chr4 176475652 176475952 -7812710 + AluJb SINE Alu 7 306 0 383 277 58 93 chr4 176476082 176476512 -7812150 + L1ME3A LINE L1 5754 6168 -2 1936 125 14 0 chr4 176476642 176476921 -7811741 - AluSp SINE Alu -30 283 1 23 0 0 0 chr4 176478953 176478976 -7809686 + AT_rich Low_complexity Low_complexity 1 23 0 252 250 119 0 chr4 176479118 176479202 -7809460 + MIR SINE MIR 104 197 -65 210 143 0 0 chr4 176479790 176479825 -7808837 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 329 218 32 8 chr4 176480044 176480168 -7808494 + (TA)n Simple_repeat Simple_repeat 1 127 0 207 69 0 0 chr4 176480184 176480213 -7808449 + (TG)n Simple_repeat Simple_repeat 2 30 0 26 30 0 0 chr4 176480732 176480765 -7807897 + AT_rich Low_complexity Low_complexity 1 33 0 2907 156 22 8 chr4 176482116 176482649 -7806013 - L1MB2 LINE L1 -8 6163 5623 259 143 0 18 chr4 176482664 176482720 -7805942 - L1MA9 LINE L1 0 6312 6258 266 306 49 56 chr4 176482975 176483119 -7805543 - MER5A DNA MER1_type -18 160 18 204 264 39 84 chr4 176483180 176483335 -7805327 - L2 LINE L2 -15 3298 3151 340 267 207 35 chr4 176483583 176483815 -7804847 + LTR16A LTR ERVL 179 450 0 17362 155 35 14 chr4 176484225 176490895 -7797767 + L1PB1 LINE L1 49 6867 0 420 316 53 13 chr4 176491507 176491659 -7797003 - L2 LINE L2 -270 3043 2886 3919 147 37 0 chr4 176491662 176492286 -7796376 + MER39B LTR ERV1 1 647 -6 434 290 72 47 chr4 176492308 176492584 -7796078 - L2 LINE L2 -508 2806 2524 3276 159 32 2 chr4 176492628 176493213 -7795449 - LTR26 LTR ERV1 0 603 1 1256 177 112 62 chr4 176494421 176494743 -7793919 + MER67C LTR ERV1 1 338 -372 2065 99 3 31 chr4 176494963 176495257 -7793405 - AluSx SINE Alu -10 302 17 222 37 0 0 chr4 176495589 176495616 -7793046 + (TA)n Simple_repeat Simple_repeat 2 28 0 200 245 85 32 chr4 176496304 176496398 -7792264 + MIR SINE MIR 81 179 -83 1713 148 23 26 chr4 176497852 176498157 -7790505 - L1MD2 LINE L1 -15 6344 6041 2505 211 165 57 chr4 176498162 176498708 -7789954 - L1MDa LINE L1 -4228 2312 1827 1775 193 0 0 chr4 176498708 176499004 -7789658 - AluJb SINE Alu -16 296 1 2505 211 165 57 chr4 176499004 176499630 -7789032 - L1MDa LINE L1 -4713 1827 1013 1432 233 25 17 chr4 176499630 176499990 -7788672 - MLT1A1 LTR MaLR 0 365 3 23 54 0 0 chr4 176500002 176500039 -7788623 + AT_rich Low_complexity Low_complexity 1 37 0 188 314 14 0 chr4 176500099 176500169 -7788493 + L3 LINE CR1 296 366 -1211 22 35 0 0 chr4 176500723 176500752 -7787910 + AT_rich Low_complexity Low_complexity 1 29 0 2335 93 3 0 chr4 176500855 176501155 -7787507 + AluSc SINE Alu 1 301 -8 225 270 27 14 chr4 176501688 176501762 -7786900 + MER5B DNA MER1_type 84 158 -20 297 340 113 7 chr4 176502219 176502360 -7786302 - MIR3 SINE MIR -9 199 44 27 0 0 0 chr4 176502398 176502425 -7786237 + AT_rich Low_complexity Low_complexity 1 27 0 1744 146 43 18 chr4 176502454 176502735 -7785927 - AluJo SINE Alu -24 288 1 29 28 0 0 chr4 176502740 176502776 -7785886 + AT_rich Low_complexity Low_complexity 1 36 0 433 267 30 0 chr4 176503321 176503422 -7785240 + MER5A DNA MER1_type 9 112 -77 2093 163 45 30 chr4 176504152 176504693 -7783969 + MLT2A2 LTR ERVL 1 552 -2 361 333 138 3 chr4 176506342 176506527 -7782135 - MIR SINE MIR -16 246 37 318 342 0 26 chr4 176507057 176507171 -7781491 + L2 LINE L2 3203 3313 0 345 266 19 70 chr4 176508094 176508252 -7780410 + L2 LINE L2 3164 3313 0 205 240 66 8 chr4 176509604 176509725 -7778937 + (CATATA)n Simple_repeat Simple_repeat 2 129 0 203 261 0 0 chr4 176509844 176509890 -7778772 + (TG)n Simple_repeat Simple_repeat 1 46 0 1163 286 86 40 chr4 176510359 176510862 -7777800 + MLT1G LTR MaLR 1 526 -64 2055 121 26 7 chr4 176511455 176511761 -7776901 + AluSx SINE Alu 1 312 0 1141 96 11 0 chr4 176511772 176511950 -7776712 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 21 0 0 0 chr4 176512139 176512160 -7776502 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 176513530 176513560 -7775102 + AT_rich Low_complexity Low_complexity 1 30 0 282 207 15 172 chr4 176513631 176513829 -7774833 + MER112 DNA MER1_type 41 207 -53 22 56 0 0 chr4 176514086 176514122 -7774540 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr4 176514771 176514800 -7773862 + AT_rich Low_complexity Low_complexity 1 29 0 407 311 82 0 chr4 176516260 176516382 -7772280 - L2 LINE L2 0 3272 3141 371 233 12 0 chr4 176516618 176516704 -7771958 + MLT1H LTR MaLR 41 127 -422 3908 141 69 44 chr4 176516715 176518131 -7770531 + LTR12 LTR ERV1 31 685 -29 845 288 118 65 chr4 176518131 176518548 -7770114 + MLT1H LTR MaLR 110 548 -1 1240 219 80 38 chr4 176518812 176519100 -7769562 - AluJo SINE Alu -12 300 1 4352 175 19 45 chr4 176519430 176521046 -7767616 - L1PB4 LINE L1 -3 6153 4571 24 0 0 0 chr4 176521400 176521424 -7767238 + AT_rich Low_complexity Low_complexity 1 24 0 294 125 18 18 chr4 176521608 176521664 -7766998 - MLT1A1 LTR MaLR -309 56 1 57 0 0 0 chr4 176521874 176521931 -7766731 + AT_rich Low_complexity Low_complexity 1 57 0 1846 44 13 18 chr4 176521993 176522220 -7766442 + AluY SINE Alu 76 301 -10 1607 175 90 26 chr4 176522695 176523038 -7765624 + MLT1A1 LTR MaLR 1 365 0 23 33 0 0 chr4 176524412 176524442 -7764220 + AT_rich Low_complexity Low_complexity 1 30 0 779 285 85 65 chr4 176524613 176525264 -7763398 - L2 LINE L2 -6 3307 2655 1532 279 130 33 chr4 176525264 176526054 -7762608 - L2 LINE L2 -1015 2299 1433 752 294 17 78 chr4 176526223 176526620 -7762042 - MLT1C LTR MaLR -14 376 3 207 294 59 0 chr4 176526631 176526699 -7761963 + MIR SINE MIR 119 190 -72 312 283 69 119 chr4 176526772 176526931 -7761731 + MIR SINE MIR 98 248 -14 183 276 35 0 chr4 176528155 176528213 -7760449 + MIR3 SINE MIR 145 204 -4 400 342 32 0 chr4 176528804 176528959 -7759703 + MIR SINE MIR 100 259 -3 28 0 0 0 chr4 176529272 176529300 -7759362 + AT_rich Low_complexity Low_complexity 1 28 0 1342 190 6 74 chr4 176529427 176529753 -7758909 - AluJo SINE Alu -8 304 1 612 261 64 0 chr4 176530115 176530272 -7758390 - LTR50 LTR ERVL -628 167 1 1706 174 11 0 chr4 176530885 176531166 -7757496 + AluJo SINE Alu 1 284 -28 710 59 0 20 chr4 176531169 176531270 -7757392 + (GAAA)n Simple_repeat Simple_repeat 2 100 0 1100 255 115 19 chr4 176531390 176531809 -7756853 + MLT1H LTR MaLR 91 549 0 23 0 0 0 chr4 176532647 176532670 -7755992 + AT_rich Low_complexity Low_complexity 1 23 0 29 28 0 0 chr4 176532803 176532839 -7755823 + AT_rich Low_complexity Low_complexity 1 36 0 764 103 9 0 chr4 176533642 176533749 -7754913 - AluSq/x SINE Alu -205 108 1 254 292 62 0 chr4 176533808 176533873 -7754789 + MIR SINE MIR 193 261 -1 183 80 0 0 chr4 176533874 176533899 -7754763 + (TTA)n Simple_repeat Simple_repeat 1 25 0 739 202 0 8 chr4 176533974 176534103 -7754559 + FLAM_C SINE Alu 1 128 -15 260 336 103 33 chr4 176534391 176534662 -7754000 + L2 LINE L2 3023 3312 -1 21 0 0 0 chr4 176534968 176534989 -7753673 + AT_rich Low_complexity Low_complexity 1 21 0 237 317 67 42 chr4 176535407 176535527 -7753135 - L2 LINE L2 0 3272 3150 2583 204 2 25 chr4 176535848 176536378 -7752284 - MLT2B1 LTR ERVL -2 518 1 32199 107 10 56 chr4 176536802 176543253 -7745409 - L1PA7 LINE L1 -6 6148 12 180 302 16 16 chr4 176544138 176544201 -7744461 + L2 LINE L2 3210 3272 0 2028 128 7 3 chr4 176544957 176545254 -7743408 - AluSx SINE Alu -14 298 1 264 369 9 0 chr4 176545668 176545779 -7742883 - MIR3 SINE MIR -32 176 65 31 0 0 0 chr4 176545839 176545870 -7742792 + AT_rich Low_complexity Low_complexity 1 31 0 1805 177 0 16 chr4 176546146 176546451 -7742211 - AluJb SINE Alu -12 300 1 2118 335 110 33 chr4 176547094 176547936 -7740726 - L2 LINE L2 -11 3302 2526 2083 117 13 0 chr4 176547936 176548234 -7740428 - AluSp SINE Alu -7 306 5 2118 335 110 33 chr4 176548234 176549281 -7739381 - L2 LINE L2 -787 2526 1261 283 282 25 92 chr4 176551632 176551795 -7736867 + L2 LINE L2 2933 3084 -188 304 363 76 0 chr4 176551872 176552043 -7736619 + MIR SINE MIR 32 215 -47 245 267 267 0 chr4 176552160 176552265 -7736397 + L2 LINE L2 3139 3271 -1 359 306 100 83 chr4 176554000 176554301 -7734361 + L2 LINE L2 2482 2787 -527 240 261 134 37 chr4 176554551 176554685 -7733977 + MIR SINE MIR 113 259 -3 2229 113 0 0 chr4 176554709 176555011 -7733651 + AluSq SINE Alu 1 302 -11 393 22 0 0 chr4 176555011 176555057 -7733605 + (TA)n Simple_repeat Simple_repeat 2 47 0 951 150 24 12 chr4 176555770 176555937 -7732725 + L1M3f LINE L1 4 172 -5156 880 228 33 0 chr4 176555942 176556122 -7732540 + MER82 DNA MER2_type 19 204 -449 1766 211 96 24 chr4 176556414 176556840 -7731822 + MER82 DNA MER2_type 197 653 0 4736 150 53 0 chr4 176557368 176558183 -7730479 - L1MC1 LINE L1 0 6333 5476 1191 165 41 0 chr4 176558183 176558401 -7730261 + L1MC1 LINE L1 6097 6323 -10 4276 287 100 24 chr4 176558424 176558953 -7729709 - L2 LINE L2 -952 2362 1875 333 0 0 0 chr4 176558953 176558990 -7729672 + (TG)n Simple_repeat Simple_repeat 1 37 0 4276 287 100 24 chr4 176558990 176560225 -7728437 - L2 LINE L2 -1439 1875 464 197 346 77 29 chr4 176560824 176560928 -7727734 + L3 LINE CR1 1012 1120 -457 483 227 60 43 chr4 176561007 176561192 -7727470 + L1ME3 LINE L1 5957 6144 -18 192 311 68 39 chr4 176562608 176562814 -7725848 + L2 LINE L2 2180 2391 -923 470 228 18 64 chr4 176565435 176565606 -7723056 - L1ME1 LINE L1 -5 6161 5999 219 376 48 16 chr4 176565753 176565878 -7722784 - MIR SINE MIR -63 145 17 226 352 34 0 chr4 176565902 176565990 -7722672 + MIR3 SINE MIR 109 199 -9 1073 157 10 50 chr4 176567354 176567552 -7721110 - AluJo SINE Alu -26 286 97 213 132 0 0 chr4 176567840 176567878 -7720784 + (TC)n Simple_repeat Simple_repeat 1 38 0 255 125 0 0 chr4 176568058 176568098 -7720564 + (TA)n Simple_repeat Simple_repeat 2 41 0 1569 164 55 60 chr4 176568586 176568671 -7719991 + MLT1A1 LTR MaLR 1 85 -280 1922 111 0 0 chr4 176568671 176569004 -7719658 + AluSg SINE Alu 21 353 0 1569 164 55 60 chr4 176569004 176569284 -7719378 + MLT1A1 LTR MaLR 85 365 0 243 254 0 0 chr4 176570620 176570648 -7718014 + CT-rich Low_complexity Low_complexity 2 29 -31 2607 97 3 3 chr4 176570648 176571009 -7717653 + THE1B LTR MaLR 1 361 -3 243 254 0 0 chr4 176571009 176571039 -7717623 + CT-rich Low_complexity Low_complexity 28 60 0 189 0 0 0 chr4 176571223 176571244 -7717418 + (TA)n Simple_repeat Simple_repeat 1 21 0 1126 238 98 47 chr4 176573304 176573691 -7714971 + MLT1J1 LTR MaLR 40 446 0 29 47 0 0 chr4 176573917 176573960 -7714702 + AT_rich Low_complexity Low_complexity 1 43 0 545 160 1 28 chr4 176574019 176574139 -7714523 - L1MA10 LINE L1 -32 6275 6032 332 125 18 0 chr4 176574139 176574191 -7714471 + L1MA10 LINE L1 6268 6324 -10 980 295 93 30 chr4 176574340 176574939 -7713723 - L2 LINE L2 0 3313 2664 1214 252 74 38 chr4 176575043 176575487 -7713175 - L2 LINE L2 -1128 2186 1727 33 66 0 0 chr4 176576043 176576104 -7712558 + AT_rich Low_complexity Low_complexity 1 61 0 233 56 0 28 chr4 176576435 176576471 -7712191 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 3164 74 39 0 chr4 176576471 176576903 -7711759 - L1PA8 LINE L1 -24 6148 5700 290 322 9 9 chr4 176578209 176578324 -7710338 - MIR SINE MIR -3 259 145 277 250 117 89 chr4 176578930 176579110 -7709552 - MLT1H LTR MaLR -2 547 363 1501 154 4 0 chr4 176579957 176580184 -7708478 - AluSg/x SINE Alu -11 299 72 198 0 0 0 chr4 176580430 176580452 -7708210 + (CA)n Simple_repeat Simple_repeat 1 22 0 1824 183 101 45 chr4 176581571 176582035 -7706627 + LTR2B LTR ERV1 1 490 0 332 242 94 47 chr4 176582178 176582327 -7706335 + MLT1J1 LTR MaLR 271 426 -20 362 307 24 31 chr4 176583348 176583475 -7705187 - MIR SINE MIR -58 150 25 382 264 87 106 chr4 176584435 176584700 -7703962 + MLT1L LTR MaLR 120 379 -236 1636 181 7 3 chr4 176585287 176585569 -7703093 + AluJb SINE Alu 7 289 -23 197 33 33 0 chr4 176585579 176585609 -7703053 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 678 276 28 33 chr4 176585629 176585843 -7702819 + L2 LINE L2 3101 3313 0 180 0 0 0 chr4 176586920 176586940 -7701722 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 542 150 88 0 chr4 176587271 176587384 -7701278 + L1MB2 LINE L1 6047 6169 -2 27 0 0 0 chr4 176587496 176587523 -7701139 + AT_rich Low_complexity Low_complexity 1 27 0 288 365 0 0 chr4 176587656 176587752 -7700910 + MIR SINE MIR 156 251 -11 29 28 0 0 chr4 176589079 176589115 -7699547 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr4 176589168 176589192 -7699470 + AT_rich Low_complexity Low_complexity 1 24 0 202 273 23 0 chr4 176590963 176591007 -7697655 + MIR SINE MIR 55 99 -109 23 33 0 0 chr4 176591179 176591209 -7697453 + AT_rich Low_complexity Low_complexity 1 30 0 504 255 38 0 chr4 176591308 176591450 -7697212 + FLAM_A SINE Alu 6 151 0 31 26 0 0 chr4 176591645 176591683 -7696979 + AT_rich Low_complexity Low_complexity 1 38 0 268 206 9 9 chr4 176592170 176592277 -7696385 + (TA)n Simple_repeat Simple_repeat 2 108 0 265 163 0 0 chr4 176593358 176593401 -7695261 + MER53 DNA DNA 2 44 -145 23 33 0 0 chr4 176594100 176594130 -7694532 + AT_rich Low_complexity Low_complexity 1 30 0 476 133 12 0 chr4 176595613 176595696 -7692966 + CT-rich Low_complexity Low_complexity 1 84 0 183 156 0 0 chr4 176596377 176596409 -7692253 + (TG)n Simple_repeat Simple_repeat 2 33 0 23 0 0 0 chr4 176597991 176598014 -7690648 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr4 176598213 176598247 -7690415 + AT_rich Low_complexity Low_complexity 1 34 0 26 50 0 0 chr4 176598540 176598580 -7690082 + AT_rich Low_complexity Low_complexity 1 40 0 1995 125 0 4 chr4 176599716 176600036 -7688626 + AluSc SINE Alu 1 319 0 27 0 0 0 chr4 176600645 176600672 -7687990 + AT_rich Low_complexity Low_complexity 1 27 0 219 69 0 0 chr4 176601262 176601291 -7687371 + (A)n Simple_repeat Simple_repeat 1 29 0 21 36 0 0 chr4 176602234 176602262 -7686400 + AT_rich Low_complexity Low_complexity 1 28 0 2356 109 0 0 chr4 176602861 176603173 -7685489 + AluSq SINE Alu 1 312 -1 2041 132 30 15 chr4 176604413 176604747 -7683915 - MER1B DNA MER1_type 0 339 1 292 380 0 0 chr4 176604755 176604876 -7683786 - MIR SINE MIR -113 149 29 418 183 24 12 chr4 176605022 176605104 -7683558 + AluJ/FLAM SINE Alu 3 85 -227 22 0 0 0 chr4 176605109 176605131 -7683531 + AT_rich Low_complexity Low_complexity 1 22 0 2173 125 0 0 chr4 176605304 176605600 -7683062 + AluSx SINE Alu 1 296 -16 872 220 66 101 chr4 176605932 176606088 -7682574 + MLT1A1 LTR MaLR 1 161 -204 898 187 0 29 chr4 176606088 176606259 -7682403 + FRAM SINE Alu 1 166 0 872 220 66 101 chr4 176606259 176606480 -7682182 + MLT1A1 LTR MaLR 161 365 0 513 258 0 0 chr4 176606889 176606986 -7681676 - Tigger7 DNA MER2_type 0 2587 2491 * 1534 217 0 0 chr4 176606985 176607252 -7681410 - Tigger7 DNA MER2_type -466 267 1 24 32 0 0 chr4 176607485 176607516 -7681146 + AT_rich Low_complexity Low_complexity 1 31 0 202 250 17 0 chr4 176608255 176608315 -7680347 + T-rich Low_complexity Low_complexity 1 61 0 1469 254 40 29 chr4 176609831 176610375 -7678287 + L1MB7 LINE L1 1273 1822 -4562 558 184 28 50 chr4 176610375 176610516 -7678146 + MLT1A2 LTR MaLR 1 138 -227 401 162 0 0 chr4 176610516 176610584 -7678078 + MLT2B3 LTR ERVL 1 68 -486 1807 229 107 14 chr4 176610678 176611135 -7677527 + MLT2B3 LTR ERVL 69 508 -14 926 228 8 50 chr4 176611145 176611386 -7677276 + MLT1A2 LTR MaLR 144 374 0 7761 233 52 55 chr4 176611397 176612599 -7676063 + L1MB7 LINE L1 1923 3128 -3292 225 0 0 0 chr4 176612599 176612624 -7676038 + (CA)n Simple_repeat Simple_repeat 2 26 0 7761 233 52 55 chr4 176612624 176612684 -7675978 + L1MB7 LINE L1 3128 3187 -3233 547 279 8 0 chr4 176612684 176612806 -7675856 + FLAM_A SINE Alu 1 123 -10 7761 233 52 55 chr4 176612806 176615325 -7673337 + L1MB7 LINE L1 3187 5689 -731 2110 112 7 3 chr4 176615325 176615619 -7673043 + AluSq SINE Alu 1 295 -18 7761 233 52 55 chr4 176615619 176616349 -7672313 + L1MB7 LINE L1 5689 6420 0 21 0 0 0 chr4 176616659 176616680 -7671982 + AT_rich Low_complexity Low_complexity 1 21 0 302 0 26 0 chr4 176618033 176618071 -7670591 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 2832 16 0 0 chr4 176618164 176618476 -7670186 - AluYb8 SINE Alu -6 312 1 182 323 126 16 chr4 176619269 176619396 -7669266 - MIR SINE MIR -5 257 117 4175 142 182 26 chr4 176619627 176620638 -7668024 + pTR5 LTR ERV1 743 2025 -413 378 242 10 0 chr4 176620638 176620737 -7667925 + LTR30 LTR ERV1 544 643 -79 36116 91 9 12 chr4 176620738 176625952 -7662710 + HERV9 LTR ERV1 1 4980 -1960 2288 174 88 91 chr4 176625919 176626802 -7661860 + HERV9 LTR ERV1 840 1720 -5176 * 4532 136 17 26 chr4 176626796 176627073 -7661589 + HERV9 LTR ERV1 504 782 -7617 1853 74 0 25 chr4 176627073 176627317 -7661345 - AluY SINE Alu -9 302 65 4532 136 17 26 chr4 176627317 176628289 -7660373 + HERV9 LTR ERV1 782 8397 -2 4951 104 53 55 chr4 176628305 176629128 -7659534 + LTR12 LTR ERV1 5 826 0 2023 149 0 7 chr4 176629318 176629627 -7659035 - AluSg SINE Alu -3 307 1 24 67 0 0 chr4 176631280 176631325 -7657337 + AT_rich Low_complexity Low_complexity 1 45 0 285 197 78 134 chr4 176632187 176632228 -7656434 - L2 LINE L2 0 3313 3271 3272 80 30 2 chr4 176632228 176632701 -7655961 + LTR19A LTR ERV1 1 486 0 285 197 78 134 chr4 176632701 176632801 -7655861 - L2 LINE L2 -42 3271 3180 203 171 0 0 chr4 176632875 176632910 -7655752 + (TCTA)n Simple_repeat Simple_repeat 1 35 0 1369 219 16 16 chr4 176633281 176633587 -7655075 - AluJo SINE Alu -4 308 3 21 0 0 0 chr4 176633953 176633974 -7654688 + AT_rich Low_complexity Low_complexity 1 21 0 574 200 72 77 chr4 176634179 176634374 -7654288 - MIR SINE MIR -6 256 63 389 357 120 37 chr4 176634709 176635309 -7653353 - L2 LINE L2 -618 2696 2047 35 95 0 0 chr4 176635313 176635418 -7653244 + AT_rich Low_complexity Low_complexity 1 105 0 314 255 342 0 chr4 176635742 176635903 -7652759 - MIR SINE MIR 0 262 47 4142 126 45 0 chr4 176638216 176638868 -7649794 - L1PA13 LINE L1 -7 6156 5476 1302 264 66 40 chr4 176638988 176639519 -7649143 - L1PA14 LINE L1 -153 6008 5464 1508 112 13 30 chr4 176639725 176639958 -7648704 + MER30 DNA MER1_type 2 230 0 307 297 11 11 chr4 176640140 176640231 -7648431 - MIR SINE MIR -169 93 3 189 171 0 0 chr4 176640277 176640312 -7648350 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 306 0 0 0 chr4 176640691 176640725 -7647937 + (TG)n Simple_repeat Simple_repeat 2 35 0 189 74 0 0 chr4 176640724 176640751 -7647911 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 205 319 101 8 chr4 176641566 176641685 -7646977 + MIR3 SINE MIR 73 202 -6 242 160 20 0 chr4 176644594 176644644 -7644018 + (TA)n Simple_repeat Simple_repeat 1 51 0 968 180 0 0 chr4 176645050 176645200 -7643462 - AluSg/x SINE Alu -26 286 137 403 266 252 0 chr4 176645228 176645371 -7643291 - MER5A DNA MER1_type 0 189 11 471 118 0 0 chr4 176647107 176647183 -7641479 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 270 269 134 17 chr4 176647344 176647463 -7641199 - MIR SINE MIR -79 183 51 21 0 0 0 chr4 176647617 176647638 -7641024 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 176648504 176648529 -7640133 + AT_rich Low_complexity Low_complexity 1 25 0 618 71 0 24 chr4 176648529 176648614 -7640048 - AluSg/x SINE Alu -18 291 209 31 68 0 0 chr4 176649059 176649118 -7639544 + AT_rich Low_complexity Low_complexity 1 59 0 1981 148 7 7 chr4 176651071 176651381 -7637281 + AluSx SINE Alu 1 310 -2 188 65 0 32 chr4 176651579 176651610 -7637052 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 187 286 82 64 chr4 176651619 176651790 -7636872 - L2 LINE L2 -19 3294 3121 283 289 215 56 chr4 176651812 176652096 -7636566 - L2 LINE L2 -679 2635 2307 1275 245 61 35 chr4 176652337 176652680 -7635982 + LTR16C LTR ERVL 140 491 0 465 280 41 82 chr4 176653134 176653377 -7635285 + MIR SINE MIR 30 262 0 211 313 60 94 chr4 176653464 176653697 -7634965 - L2 LINE L2 -44 3228 3004 * 330 373 100 9 chr4 176653678 176653898 -7634764 - L2 LINE L2 -493 2821 2582 21 0 0 0 chr4 176654504 176654525 -7634137 + AT_rich Low_complexity Low_complexity 1 21 0 184 29 29 29 chr4 176655195 176655229 -7633433 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 587 325 119 22 chr4 176655241 176655601 -7633061 - MLT1I LTR MaLR -6 403 9 226 314 19 29 chr4 176655745 176655850 -7632812 - MIR3 SINE MIR 0 208 105 35 24 0 0 chr4 176656084 176656126 -7632536 + AT_rich Low_complexity Low_complexity 1 42 0 1784 278 91 29 chr4 176656436 176656497 -7632165 + L1MEc LINE L1 35 91 -6305 2205 119 19 32 chr4 176656497 176656866 -7631796 - THE1B LTR MaLR 0 364 1 1784 278 91 29 chr4 176656866 176656883 -7631779 + L1MEc LINE L1 91 106 -6290 2701 0 0 0 chr4 176656883 176657170 -7631492 - AluYa5 SINE Alu -3 308 22 1784 278 91 29 chr4 176657170 176657838 -7630824 + L1MEc LINE L1 106 828 -5568 2607 210 6 2 chr4 176657838 176658377 -7630285 + L1 LINE L1 3622 4162 -1984 10201 210 36 62 chr4 176658399 176659045 -7629617 + L1PA15-16 LINE L1 40 701 -6305 608 0 14 0 chr4 176659045 176659117 -7629545 + (TG)n Simple_repeat Simple_repeat 2 74 0 10201 210 36 62 chr4 176659117 176661791 -7626871 + L1PA15-16 LINE L1 701 3442 -3564 2063 102 13 20 chr4 176661791 176662095 -7626567 + AluSx SINE Alu 6 307 -5 10201 210 36 62 chr4 176662095 176663165 -7625497 + L1PA15-16 LINE L1 3442 4538 -2468 866 66 5 2 chr4 176663165 176663377 -7625285 + AluY SINE Alu 51 296 -15 10201 210 36 62 chr4 176663377 176664220 -7624442 + L1PA15-16 LINE L1 4538 5401 -1605 276 30 0 0 chr4 176664220 176664253 -7624409 + (AGTAG)n Simple_repeat Simple_repeat 3 35 0 10201 210 36 62 chr4 176664253 176664927 -7623735 + L1PA15-16 LINE L1 5401 6091 -915 2270 116 3 0 chr4 176664927 176665237 -7623425 - AluSp SINE Alu -2 311 1 10201 210 36 62 chr4 176665237 176666024 -7622638 + L1PA15-16 LINE L1 6091 6825 -181 238 326 0 0 chr4 176666027 176666116 -7622546 + L1MA3 LINE L1 6189 6277 -28 3687 203 31 10 chr4 176666136 176666963 -7621699 + L1MB1 LINE L1 5296 6140 -28 887 107 0 0 chr4 176666964 176667085 -7621577 + AluSg/x SINE Alu 183 303 -9 726 234 153 20 chr4 176667244 176667637 -7621025 + L1MEc LINE L1 889 1333 -5063 6362 258 57 8 chr4 176667752 176669331 -7619331 + L1PA12 LINE L1 1 1656 -5925 5769 232 23 11 chr4 176669383 176671236 -7617426 + L1PA12 LINE L1 2471 4362 -3222 1192 278 77 26 chr4 176671205 176672042 -7616620 + L1MEc LINE L1 1767 2599 -3616 * 1019 278 80 5 chr4 176672058 176672482 -7616180 - L1MDa LINE L1 -3038 3919 3464 331 295 42 21 chr4 176672476 176672761 -7615901 - L1MDa LINE L1 -4046 2911 2621 * 266 314 60 0 chr4 176673016 176673299 -7615363 - L1M4b LINE L1 -2640 4317 4018 816 273 43 35 chr4 176673396 176673883 -7614779 - L1M4b LINE L1 -3119 3838 3348 572 239 0 54 chr4 176675328 176675527 -7613135 - L1M4b LINE L1 -4909 1946 1759 2128 137 114 5 chr4 176675527 176675913 -7612749 + MSTA LTR MaLR 1 428 0 572 239 0 54 chr4 176675913 176675935 -7612727 - L1M4b LINE L1 -5096 1759 1737 3816 147 74 16 chr4 176675951 176676623 -7612039 - MER50 LTR ERV1 -23 711 1 1550 214 16 37 chr4 176676631 176677098 -7611564 - L1M4b LINE L1 -5129 1818 1260 1756 179 25 6 chr4 176677118 176677443 -7611219 - MER44D DNA MER2_type -8 601 1 3035 280 51 22 chr4 176677452 176678617 -7610045 - L1M4b LINE L1 -5606 1253 18 23 0 0 0 chr4 176678917 176678940 -7609722 + AT_rich Low_complexity Low_complexity 1 23 0 2155 92 7 3 chr4 176679659 176679941 -7608721 - AluSq SINE Alu -30 283 1 22 56 0 0 chr4 176680704 176680740 -7607922 + AT_rich Low_complexity Low_complexity 1 36 0 2030 121 45 0 chr4 176682811 176683101 -7605561 + AluSp SINE Alu 1 303 -10 2394 84 0 7 chr4 176683452 176683761 -7604901 + AluSx SINE Alu 1 307 -5 2319 59 10 0 chr4 176684942 176685230 -7603432 + AluY SINE Alu 3 293 -18 21 36 0 0 chr4 176685545 176685573 -7603089 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 176686875 176686897 -7601765 + AT_rich Low_complexity Low_complexity 1 22 0 300 220 153 8 chr4 176687337 176687455 -7601207 - L1ME LINE L1 -733 5431 5297 22 88 0 0 chr4 176687461 176687518 -7601144 + AT_rich Low_complexity Low_complexity 1 57 0 23 0 0 0 chr4 176687726 176687749 -7600913 + AT_rich Low_complexity Low_complexity 1 23 0 1949 151 0 10 chr4 176687791 176688090 -7600572 + AluSx SINE Alu 1 296 -16 23 0 0 0 chr4 176688608 176688631 -7600031 + AT_rich Low_complexity Low_complexity 1 23 0 184 357 0 0 chr4 176689378 176689434 -7599228 - L2 LINE L2 -1 3312 3257 4980 184 40 26 chr4 176689718 176691892 -7596770 + L1PB1 LINE L1 3840 6151 0 2131 117 0 0 chr4 176691942 176692255 -7596407 - AluSx SINE Alu 0 313 1 21 0 0 0 chr4 176692853 176692874 -7595788 + AT_rich Low_complexity Low_complexity 1 21 0 35 41 0 0 chr4 176692973 176693022 -7595640 + AT_rich Low_complexity Low_complexity 1 49 0 428 379 57 3 chr4 176693827 176694109 -7594553 + L2 LINE L2 3010 3306 -7 183 205 179 51 chr4 176694169 176694247 -7594415 - L2 LINE L2 0 3313 3226 862 254 41 28 chr4 176694508 176694799 -7593863 + L1MA9 LINE L1 5980 6274 -38 375 310 63 28 chr4 176694960 176695065 -7593597 + L1MEc LINE L1 1956 2056 -4340 2255 121 0 0 chr4 176695065 176695371 -7593291 + AluSg SINE Alu 2 307 -3 375 310 63 28 chr4 176695371 176695520 -7593142 + L1MEc LINE L1 2056 2219 -4177 466 314 75 4 chr4 176695616 176695842 -7592820 + L1MEc LINE L1 3582 3823 -2392 42598 50 4 3 chr4 176695847 176701993 -7586669 + L1PA4 LINE L1 4 6149 -6 808 289 36 15 chr4 176701987 176702319 -7586343 + L1MEc LINE L1 3811 4149 -2066 * 31 0 0 0 chr4 176702855 176702886 -7585776 + AT_rich Low_complexity Low_complexity 1 31 0 191 36 36 0 chr4 176702994 176703022 -7585640 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 259 30 0 0 chr4 176703022 176703055 -7585607 - L1PA2 LINE L1 -11 6144 6112 2133 112 7 7 chr4 176703302 176703597 -7585065 - AluSx SINE Alu -17 295 1 304 132 0 0 chr4 176904611 176904664 -7383998 - MLT2B2 LTR ERVL 0 520 468 239 263 0 12 chr4 176904667 176904747 -7383915 - L1MC4 LINE L1 -1347 6695 6617 345 47 0 0 chr4 176904747 176904790 -7383872 + (CA)n Simple_repeat Simple_repeat 1 43 0 1519 194 117 54 chr4 176904812 176905036 -7383626 - MLT2B2 LTR ERVL -44 471 263 2356 85 17 0 chr4 176905036 176905330 -7383332 + AluSq SINE Alu 15 313 0 1519 194 117 54 chr4 176905330 176905548 -7383114 - MLT2B2 LTR ERVL -252 263 1 305 292 102 29 chr4 176905798 176905935 -7382727 - MIR SINE MIR -114 148 2 231 114 0 0 chr4 176908479 176908514 -7380148 + (CA)n Simple_repeat Simple_repeat 2 36 0 255 274 19 47 chr4 176908633 176908739 -7379923 + MIR SINE MIR 110 212 -50 2106 134 3 0 chr4 176908982 176909280 -7379382 + AluSq SINE Alu 2 300 -13 21 36 0 0 chr4 176909613 176909641 -7379021 + AT_rich Low_complexity Low_complexity 1 28 0 1365 159 124 31 chr4 176910122 176910380 -7378282 + AluJo SINE Alu 5 286 -26 342 98 0 0 chr4 176910380 176910431 -7378231 + (TA)n Simple_repeat Simple_repeat 2 52 0 774 251 21 11 chr4 176910666 176910853 -7377809 - MIR SINE MIR -12 250 62 362 266 64 0 chr4 176911339 176911448 -7377214 - MLT1I LTR MaLR -260 149 34 369 290 81 23 chr4 176911812 176912119 -7376543 + L1ME LINE L1 5260 5584 -578 500 284 8 8 chr4 176912270 176912397 -7376265 + L2 LINE L2 3186 3312 -1 246 283 33 0 chr4 176912413 176912505 -7376157 + L1ME LINE L1 5795 5889 -281 21 0 0 0 chr4 176915048 176915069 -7373593 + AT_rich Low_complexity Low_complexity 1 21 0 2070 152 0 0 chr4 176915585 176915881 -7372781 + AluSx SINE Alu 1 296 -16 285 306 120 0 chr4 176916016 176916124 -7372538 - L2 LINE L2 -5 3267 3147 182 383 0 0 chr4 176916625 176916706 -7371956 + MIR SINE MIR 90 170 -92 268 186 171 0 chr4 176916958 176917028 -7371634 + MIR SINE MIR 165 246 -16 263 231 154 26 chr4 176917093 176917171 -7371491 + MIR SINE MIR 175 262 0 732 227 7 7 chr4 176918918 176919068 -7369594 - MIR SINE MIR -3 259 110 1422 149 0 9 chr4 176919086 176919314 -7369348 + AluJo SINE Alu 11 236 -76 2011 225 26 38 chr4 176920571 176921145 -7367517 - L1MB5 LINE L1 -8 6166 5600 263 340 97 0 chr4 176921409 176921512 -7367150 - L2 LINE L2 0 3272 3160 2210 110 0 16 chr4 176921997 176922314 -7366348 - AluSx SINE Alu 0 312 1 535 289 64 10 chr4 176922524 176922728 -7365934 - MLT1J LTR MaLR -194 317 103 285 263 153 25 chr4 176924508 176924626 -7364036 + L2 LINE L2 3169 3301 -12 220 353 108 38 chr4 176924729 176925154 -7363508 + L2 LINE L2 2521 2975 -339 188 264 38 0 chr4 176925494 176925547 -7363115 - L2 LINE L2 0 3272 3218 395 254 22 196 chr4 176925559 176925961 -7362701 + L2 LINE L2 2929 3260 -12 1743 201 73 25 chr4 176927697 176928179 -7360483 + MLT1D LTR MaLR 1 505 0 1788 287 57 54 chr4 176928827 176929841 -7358821 + L2 LINE L2 2134 3149 -164 429 70 0 0 chr4 176929841 176929898 -7358764 + (TA)n Simple_repeat Simple_repeat 2 58 0 213 278 0 0 chr4 176929924 176929978 -7358684 + L2 LINE L2 3222 3275 -38 204 40 0 0 chr4 176930207 176930232 -7358430 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 224 235 44 0 chr4 176930756 176930824 -7357838 + (TA)n Simple_repeat Simple_repeat 1 71 0 351 189 15 30 chr4 176930842 176930974 -7357688 + (TA)n Simple_repeat Simple_repeat 1 130 0 2192 123 26 0 chr4 176933912 176934214 -7354448 - AluSx SINE Alu -2 310 1 275 308 23 39 chr4 176936097 176936227 -7352435 + L2 LINE L2 2933 3060 -212 186 206 0 0 chr4 176936370 176936404 -7352258 + L2 LINE L2 3265 3298 -15 563 320 36 27 chr4 176936899 176937124 -7351538 - MIR SINE MIR -14 248 22 1583 125 37 110 chr4 176937822 176938150 -7350512 + AluJo SINE Alu 1 304 -8 2236 203 39 51 chr4 176939139 176939242 -7349420 - MER68 LTR ERV1 -1 561 458 1315 192 3 88 chr4 176939242 176939549 -7349113 - AluJo SINE Alu -31 281 1 2236 203 39 51 chr4 176939549 176940011 -7348651 - MER68 LTR ERV1 -104 458 3 249 310 30 40 chr4 176940782 176940882 -7347780 + L2 LINE L2 2986 3084 -188 196 336 188 7 chr4 176942868 176943017 -7345645 - L3b LINE CR1 -37 1546 1371 206 375 0 0 chr4 176943294 176943366 -7345296 - L2 LINE L2 -3 3269 3198 299 375 130 48 chr4 176943568 176943923 -7344739 - L2 LINE L2 0 3272 2889 1965 89 4 19 chr4 176944513 176944783 -7343879 + AluSp SINE Alu 1 266 -47 22 56 0 0 chr4 176945220 176945256 -7343406 + AT_rich Low_complexity Low_complexity 1 36 0 242 382 0 30 chr4 176945300 176945465 -7343197 - L2 LINE L2 -1831 1483 1324 1920 38 17 17 chr4 176945679 176945917 -7342745 + AluY SINE Alu 60 297 -14 1683 177 18 25 chr4 176945963 176946288 -7342374 - AluJb SINE Alu 0 323 1 512 366 72 22 chr4 176946353 176946812 -7341850 - L2 LINE L2 -2058 1256 775 22 70 0 0 chr4 176946850 176946893 -7341769 + AT_rich Low_complexity Low_complexity 1 43 0 531 0 0 0 chr4 176947514 176947573 -7341089 + (CA)n Simple_repeat Simple_repeat 2 60 0 2577 20 0 7 chr4 176947699 176947992 -7340670 - AluY SINE Alu -3 308 18 216 0 0 0 chr4 176948919 176948943 -7339719 + (CA)n Simple_repeat Simple_repeat 2 25 0 261 270 22 95 chr4 176951185 176951322 -7337340 + L2 LINE L2 3179 3305 -8 301 244 37 12 chr4 176951578 176951660 -7337002 + CT-rich Low_complexity Low_complexity 1 84 0 183 42 0 0 chr4 176952385 176952409 -7336253 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 189 0 0 0 chr4 176953394 176953415 -7335247 + (T)n Simple_repeat Simple_repeat 1 21 0 1728 141 7 69 chr4 176954036 176954340 -7334322 - AluSx SINE Alu -25 287 3 303 208 0 0 chr4 176954509 176954562 -7334100 - AluSc SINE Alu -113 186 134 2370 109 0 3 chr4 176956089 176956401 -7332261 + AluSx SINE Alu 1 311 -1 180 279 0 0 chr4 176956626 176956669 -7331993 - L2 LINE L2 -4 3309 3267 2538 194 63 3 chr4 176956721 176957336 -7331326 + MER63C DNA MER1_type 265 916 -14 465 335 85 0 chr4 176957336 176957524 -7331138 - L2 LINE L2 -619 2695 2492 181 289 19 0 chr4 176961969 176962021 -7326641 - L2 LINE L2 0 3313 3261 21 0 0 0 chr4 176962199 176962220 -7326442 + AT_rich Low_complexity Low_complexity 1 21 0 2378 47 40 3 chr4 176962733 176963032 -7325630 - AluY SINE Alu -1 310 1 25 31 0 0 chr4 176963567 176963599 -7325063 + AT_rich Low_complexity Low_complexity 1 32 0 229 234 0 0 chr4 176964206 176964253 -7324409 + MLT1F LTR MaLR 1 47 -495 1609 147 4 8 chr4 176964253 176964504 -7324158 - AluSg SINE Alu -2 308 59 282 95 0 0 chr4 176964692 176964734 -7323928 + (A)n Simple_repeat Simple_repeat 1 42 0 23 33 0 0 chr4 176964913 176964943 -7323719 + AT_rich Low_complexity Low_complexity 1 30 0 2654 22 6 6 chr4 176965390 176965701 -7322961 - AluY SINE Alu 0 311 1 25 0 0 0 chr4 176965854 176965879 -7322783 + AT_rich Low_complexity Low_complexity 1 25 0 1944 132 4 0 chr4 176965977 176966310 -7322352 - AluSx SINE Alu 0 334 1 1984 137 0 22 chr4 176966494 176966809 -7321853 - AluSx SINE Alu 0 312 5 186 43 0 0 chr4 176967550 176967573 -7321089 + (CA)n Simple_repeat Simple_repeat 2 24 0 180 97 0 0 chr4 176969330 176969361 -7319301 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 24 0 0 0 chr4 176971201 176971225 -7317437 + AT_rich Low_complexity Low_complexity 1 24 0 224 236 0 0 chr4 176972758 176972813 -7315849 + T-rich Low_complexity Low_complexity 1 55 0 1357 120 5 5 chr4 176972872 176973080 -7315582 - L1PA10 LINE L1 -4 6164 5957 210 37 0 0 chr4 176973362 176973389 -7315273 + (CA)n Simple_repeat Simple_repeat 2 28 0 220 351 209 0 chr4 176974048 176974182 -7314480 + MIR3 SINE MIR 37 198 -10 1290 213 0 16 chr4 176974210 176974464 -7314198 + AluJb SINE Alu 11 260 -52 1823 155 50 44 chr4 176974464 176974826 -7313836 - THE1B LTR MaLR 0 364 1 10683 108 21 11 chr4 176974826 176976391 -7312271 - THE1B-int LTR MaLR 0 1580 1 1663 164 52 23 chr4 176976392 176976739 -7311923 - THE1B LTR MaLR -7 357 1 21 0 0 0 chr4 176980325 176980346 -7308316 + AT_rich Low_complexity Low_complexity 1 21 0 1081 163 71 46 chr4 176981398 176981599 -7307063 - MER33 DNA MER1_type -2267 318 107 2277 81 0 39 chr4 176981599 176981909 -7306753 - AluY SINE Alu -13 298 1 1081 163 71 46 chr4 176981909 176981990 -7306672 - MER33 DNA MER1_type -2478 107 29 2028 103 11 7 chr4 176981992 176982301 -7306361 + AluSp SINE Alu 3 312 0 283 291 121 21 chr4 176982357 176982526 -7306136 + MIR3 SINE MIR 3 187 -61 762 164 0 8 chr4 176982595 176982723 -7305939 - FLAM_C SINE Alu -16 127 1 690 290 202 23 chr4 176984033 176984756 -7303906 - L2 LINE L2 -4 3309 2444 274 341 0 0 chr4 176985112 176985200 -7303462 - MER94 DNA DNA -44 90 3 192 217 0 0 chr4 176985962 176986008 -7302654 + (CTA)n Simple_repeat Simple_repeat 2 47 0 338 267 0 69 chr4 176987578 176987645 -7301017 - MIR SINE MIR -156 106 47 2161 122 10 0 chr4 176987645 176987941 -7300721 + AluSg SINE Alu 1 299 -11 338 267 0 69 chr4 176987941 176987974 -7300688 - MIR SINE MIR -215 47 13 376 295 58 19 chr4 176988185 176988341 -7300321 - MIR SINE MIR -51 211 50 402 258 129 46 chr4 176989447 176989664 -7298998 - MIR SINE MIR -15 247 13 199 317 58 19 chr4 176990465 176990569 -7298093 + L2 LINE L2 2600 2707 -607 677 333 81 19 chr4 176990726 176991144 -7297518 - MLT1K LTR MaLR -118 470 27 220 294 0 0 chr4 176991255 176991306 -7297356 - MIR3 SINE MIR -10 198 148 1177 259 150 5 chr4 176991445 176991563 -7297099 + MLT1F1 LTR MaLR 72 171 -396 192 40 0 0 chr4 176991563 176991588 -7297074 + (TC)n Simple_repeat Simple_repeat 2 26 0 1177 259 150 5 chr4 176991588 176991875 -7296787 + MLT1F1 LTR MaLR 171 536 -31 230 231 10 106 chr4 176991908 176992012 -7296650 - MLT1J2 LTR MaLR -72 378 285 864 231 80 51 chr4 176992792 176993103 -7295559 - MLT1J2 LTR MaLR -130 320 1 2407 47 43 3 chr4 176993228 176993527 -7295135 + AluY SINE Alu 1 311 0 3342 62 2 0 chr4 176993840 176994272 -7294390 + L1PA8 LINE L1 5736 6168 -4 1463 222 21 3 chr4 176995586 176995919 -7292743 - MER58B DNA MER1_type 0 341 3 189 0 0 0 chr4 176996010 176996031 -7292631 + (T)n Simple_repeat Simple_repeat 1 21 0 233 172 35 17 chr4 176996234 176996292 -7292370 + L1MCa LINE L1 2007 2065 -4361 205 211 0 0 chr4 176996292 176996330 -7292332 + (TA)n Simple_repeat Simple_repeat 1 38 0 252 167 0 0 chr4 176996344 176996392 -7292270 + (CATA)n Simple_repeat Simple_repeat 3 50 0 29 28 0 0 chr4 176996864 176996900 -7291762 + AT_rich Low_complexity Low_complexity 1 36 0 204 206 0 0 chr4 177000373 177000407 -7288255 - L2 LINE L2 -38 3234 3201 452 294 70 25 chr4 177000451 177000652 -7288010 + MIR SINE MIR 12 221 -41 183 308 0 0 chr4 177000664 177000703 -7287959 - L2 LINE L2 -86 3186 3148 184 320 60 30 chr4 177000974 177001074 -7287588 - L2 LINE L2 -7 3306 3204 487 341 169 26 chr4 177001228 177002380 -7286282 + L2 LINE L2 1437 2753 -561 305 311 42 0 chr4 177002423 177002542 -7286120 + MER94 DNA DNA 5 128 -6 233 221 0 151 chr4 177002543 177002629 -7286033 + L2 LINE L2 3198 3270 -2 298 297 115 66 chr4 177003365 177003547 -7285115 - MIR SINE MIR -12 250 60 790 193 54 4 chr4 177003587 177003896 -7284766 - MLT1A1 LTR MaLR 0 365 5 2347 102 0 0 chr4 177004309 177004614 -7284048 + AluY SINE Alu 1 305 -6 505 189 28 9 chr4 177004650 177004756 -7283906 + MIR SINE MIR 98 205 -57 309 135 0 0 chr4 177004757 177004809 -7283853 + (TA)n Simple_repeat Simple_repeat 1 52 0 594 304 21 5 chr4 177006224 177006415 -7282247 - MIR SINE MIR -11 251 58 1990 139 7 0 chr4 177006474 177006762 -7281900 - AluJb SINE Alu -19 293 4 1251 140 8 0 chr4 177007129 177007384 -7281278 + L1PB1 LINE L1 5659 5995 -156 1232 165 0 13 chr4 177007322 177007539 -7281123 + L1PB1 LINE L1 5927 6147 -4 1065 264 138 36 chr4 177007635 177008078 -7280584 + LTR33 LTR ERVL 34 521 0 1345 272 136 21 chr4 177008993 177009478 -7279184 - MLT1H LTR MaLR -6 543 3 27 29 0 0 chr4 177011517 177011551 -7277111 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chr4 177012101 177012125 -7276537 + AT_rich Low_complexity Low_complexity 1 24 0 198 150 0 0 chr4 177013605 177013645 -7275017 + (TG)n Simple_repeat Simple_repeat 1 40 0 455 306 81 12 chr4 177014204 177014364 -7274298 + MIR SINE MIR 21 191 -71 748 301 48 64 chr4 177017593 177017969 -7270693 - MLT1K LTR MaLR -67 521 152 284 269 37 148 chr4 177018291 177018562 -7270100 + L2 LINE L2 3002 3242 -71 207 0 0 0 chr4 177018618 177018641 -7270021 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 22 56 0 0 chr4 177020320 177020356 -7268306 + AT_rich Low_complexity Low_complexity 1 36 0 22 70 0 0 chr4 177020422 177020465 -7268197 + AT_rich Low_complexity Low_complexity 1 43 0 22 56 0 0 chr4 177021219 177021255 -7267407 + AT_rich Low_complexity Low_complexity 1 36 0 672 246 84 21 chr4 177021663 177021854 -7266808 + MIR SINE MIR 48 250 -12 245 277 136 6 chr4 177022893 177023049 -7265613 - MIR SINE MIR -6 256 72 189 107 0 0 chr4 177023051 177023079 -7265583 + (TG)n Simple_repeat Simple_repeat 1 28 0 2013 103 3 31 chr4 177024330 177024621 -7264041 - AluSc SINE Alu -26 283 1 234 257 133 9 chr4 177025711 177025816 -7262846 - MER110A LTR ERV1 0 468 351 1773 164 7 3 chr4 177025925 177026217 -7262445 - AluJo SINE Alu -19 293 1 1884 161 6 22 chr4 177026693 177026896 -7261766 - MLT1A1 LTR MaLR -1 364 166 2785 95 0 8 chr4 177026896 177027274 -7261388 + THE1C LTR MaLR 1 375 0 1884 161 6 22 chr4 177027274 177027392 -7261270 - MLT1A1 LTR MaLR -199 166 48 3440 161 10 3 chr4 177027792 177028415 -7260247 + L1MA4A LINE L1 5676 6302 -1 22 0 0 0 chr4 177028574 177028596 -7260066 + AT_rich Low_complexity Low_complexity 1 22 0 341 298 61 0 chr4 177029192 177029306 -7259356 - L2 LINE L2 -4 3309 3189 355 276 92 35 chr4 177029517 177029691 -7258971 + L2 LINE L2 3113 3296 -17 217 182 73 18 chr4 177030158 177030213 -7258449 - MIR3 SINE MIR -5 203 146 362 293 81 8 chr4 177030763 177030886 -7257776 - MIR SINE MIR -58 150 19 2339 87 3 0 chr4 177031472 177031782 -7256880 + AluSp SINE Alu 1 311 -2 585 259 183 5 chr4 177031847 177032044 -7256618 - MIR SINE MIR -26 236 5 640 295 82 10 chr4 177032050 177032257 -7256405 - Charlie8 DNA MER1_type -2195 222 1 24 0 0 0 chr4 177032767 177032791 -7255871 + AT_rich Low_complexity Low_complexity 1 24 0 2650 36 0 3 chr4 177032995 177033301 -7255361 + AluY SINE Alu 2 306 -5 267 292 22 45 chr4 177033313 177033402 -7255260 - MIR SINE MIR -106 102 16 21 0 0 0 chr4 177033808 177033829 -7254833 + AT_rich Low_complexity Low_complexity 1 21 0 2247 104 3 0 chr4 177033891 177034188 -7254474 - AluSx SINE Alu -14 298 1 180 303 109 17 chr4 177034459 177034578 -7254084 + L2 LINE L2 3137 3266 -6 212 280 48 104 chr4 177035521 177035646 -7253016 - MIR SINE MIR -110 152 35 1722 86 56 0 chr4 177035793 177036060 -7252602 + L1MA3 LINE L1 6023 6304 -1 2021 124 6 32 chr4 177036666 177036981 -7251681 - AluSq SINE Alu -4 309 3 888 305 57 3 chr4 177037067 177037401 -7251261 + L1MC4 LINE L1 7385 7736 -306 188 353 0 0 chr4 177037472 177037540 -7251122 + MIR SINE MIR 184 251 -11 2418 49 0 29 chr4 177037594 177037900 -7250762 - AluY SINE Alu -14 297 1 2126 258 80 2 chr4 177040924 177041548 -7247114 + HsTC2c DNA Tc2 10 682 -47 2160 130 0 0 chr4 177041766 177042066 -7246596 - AluSx SINE Alu -12 300 1 186 324 169 0 chr4 177042360 177042496 -7246166 + MIR SINE MIR 93 251 -11 343 319 21 89 chr4 177042604 177042795 -7245867 - MER5B DNA MER1_type 0 178 1 275 132 38 0 chr4 177046678 177046731 -7241931 + (TATG)n Simple_repeat Simple_repeat 2 56 0 1310 180 99 43 chr4 177046731 177047185 -7241477 - LTR48 LTR ERV1 -2 785 130 248 209 0 0 chr4 177047222 177047265 -7241397 - LTR48B LTR ERV1 -601 43 1 248 329 0 12 chr4 177047659 177047741 -7240921 - MIR SINE MIR -179 83 3 25 31 0 0 chr4 177048070 177048102 -7240560 + AT_rich Low_complexity Low_complexity 1 32 0 24 32 0 0 chr4 177048148 177048179 -7240483 + AT_rich Low_complexity Low_complexity 1 31 0 209 373 32 56 chr4 177048286 177048412 -7240250 + MIR SINE MIR 17 139 -69 6583 186 15 1 chr4 177048423 177049432 -7239230 - L1P5 LINE L1 -721 5430 4389 234 0 0 0 chr4 177049432 177049458 -7239204 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 6583 186 15 1 chr4 177049458 177049914 -7238748 - L1P5 LINE L1 -1762 4389 3941 4845 106 4 4 chr4 177049916 177050626 -7238036 + L1PB1 LINE L1 5441 6150 -1 446 176 0 4 chr4 177052588 177052676 -7235986 - MER92B LTR ERV1 -468 86 1 184 274 0 0 chr4 177052943 177052994 -7235668 - MER5A DNA MER1_type -138 51 1 287 157 14 0 chr4 177053737 177053807 -7234855 + CT-rich Low_complexity Low_complexity 2 72 0 23 0 0 0 chr4 177054572 177054595 -7234067 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr4 177055617 177055647 -7233015 + AT_rich Low_complexity Low_complexity 1 30 0 543 213 41 32 chr4 177056071 177056245 -7232417 + MSTC LTR MaLR 1 186 -210 358 225 1 3 chr4 177056253 177056336 -7232326 + MSTB2 LTR MaLR 347 452 0 327 278 31 0 chr4 177056448 177056545 -7232117 - MIR SINE MIR -26 236 137 312 295 78 55 chr4 177057851 177058122 -7230540 + L1ME LINE L1 685 961 -5109 353 297 130 7 chr4 177058125 177058263 -7230399 - MIR SINE MIR -7 255 101 2029 118 14 7 chr4 177058497 177058794 -7229868 + AluSc SINE Alu 3 301 -8 203 349 40 47 chr4 177059373 177059522 -7229140 - MIR SINE MIR -46 162 15 215 225 0 0 chr4 177060411 177060451 -7228211 + CT-rich Low_complexity Low_complexity 4 43 0 1164 155 17 80 chr4 177060459 177060488 -7228174 - AluJo SINE Alu 0 312 283 270 0 0 0 chr4 177060488 177060518 -7228144 + (TG)n Simple_repeat Simple_repeat 1 30 0 1164 155 17 80 chr4 177060518 177060727 -7227935 - AluJo SINE Alu -29 283 89 526 198 0 0 chr4 177060795 177060881 -7227781 - AluJo SINE Alu -226 86 1 25 31 0 0 chr4 177061693 177061725 -7226937 + AT_rich Low_complexity Low_complexity 1 32 0 31 44 0 0 chr4 177062372 177062417 -7226245 + AT_rich Low_complexity Low_complexity 1 45 0 196 329 68 0 chr4 177063970 177064043 -7224619 + L2 LINE L2 3230 3307 -6 647 45 11 0 chr4 177064133 177064222 -7224440 + L1PA13 LINE L1 6073 6162 -1 544 255 27 33 chr4 177064825 177065009 -7223653 - MER112 DNA MER1_type -9 251 69 494 287 97 44 chr4 177065069 177066048 -7222614 - L1ME LINE L1 -521 5649 4615 652 289 90 39 chr4 177066283 177066750 -7221912 - L1ME LINE L1 -1952 4194 3704 366 311 172 14 chr4 177066874 177067083 -7221579 + MIR SINE MIR 6 247 -15 30 83 0 0 chr4 177067095 177067167 -7221495 + AT_rich Low_complexity Low_complexity 1 72 0 194 237 289 40 chr4 177067660 177067812 -7220850 + MIR SINE MIR 8 197 -65 221 224 69 0 chr4 177068536 177068594 -7220068 + MIR SINE MIR 156 217 -45 182 265 20 0 chr4 177069628 177069677 -7218985 + MIR SINE MIR 76 125 -83 263 293 0 49 chr4 177069682 177069764 -7218898 + MER5B DNA MER1_type 98 175 -3 285 230 0 0 chr4 177069826 177069913 -7218749 - MER5A DNA MER1_type -99 90 4 3923 153 59 58 chr4 177072005 177072938 -7215724 - L1MC3 LINE L1 -2 7783 6850 226 338 42 0 chr4 177073067 177073138 -7215524 + MIR SINE MIR 75 148 -114 1311 199 88 80 chr4 177075058 177075385 -7213277 + MLT2D LTR ERVL 1 324 -90 216 0 0 0 chr4 177075385 177075409 -7213253 + (TC)n Simple_repeat Simple_repeat 2 25 0 * 255 103 0 0 chr4 177075408 177075447 -7213215 + (TG)n Simple_repeat Simple_repeat 2 40 0 1311 199 88 80 chr4 177075409 177075466 -7213196 + MLT2D LTR ERVL 324 353 -61 6542 142 37 16 chr4 177075466 177076090 -7212572 + Tigger3b DNA MER2_type 1 610 -2418 1660 182 9 31 chr4 177076090 177076409 -7212253 + AluJo SINE Alu 1 312 0 6542 142 37 16 chr4 177076409 177076986 -7211676 + Tigger3b DNA MER2_type 610 1228 -3 1311 199 88 80 chr4 177076986 177077049 -7211613 + MLT2D LTR ERVL 353 414 0 264 382 70 63 chr4 177077604 177078046 -7210616 + L2 LINE L2 2827 3271 -1 22 35 0 0 chr4 177078158 177078187 -7210475 + AT_rich Low_complexity Low_complexity 1 29 0 2268 131 16 16 chr4 177078402 177078775 -7209887 + THE1C LTR MaLR 3 375 0 556 290 102 0 chr4 177079019 177079195 -7209467 - MIR SINE MIR -50 212 19 259 179 0 77 chr4 177079310 177079388 -7209274 - L1ME LINE L1 -5504 566 495 256 281 26 44 chr4 177079741 177079855 -7208807 - L1ME LINE L1 -5631 439 328 404 181 9 95 chr4 177080529 177080634 -7208028 - MER94 DNA DNA 0 134 39 770 212 0 12 chr4 177080674 177080839 -7207823 - MLT1B LTR MaLR -225 165 3 270 339 71 36 chr4 177081134 177081302 -7207360 + MER5A DNA MER1_type 16 189 0 547 270 71 107 chr4 177083605 177083942 -7204720 - MLT1J LTR MaLR -45 466 142 222 340 75 28 chr4 177084096 177084202 -7204460 - L2 LINE L2 -21 3251 3141 349 331 65 0 chr4 177084238 177084392 -7204270 + L1ME LINE L1 5582 5745 -376 2097 111 3 14 chr4 177085911 177086208 -7202454 + AluSc SINE Alu 1 294 -15 1766 163 0 7 chr4 177086612 177086889 -7201773 + AluJo SINE Alu 1 275 -37 508 121 38 45 chr4 177086894 177087026 -7201636 + GA-rich Low_complexity Low_complexity 2 132 0 2161 135 0 0 chr4 177089768 177090079 -7198583 - AluSx SINE Alu -1 311 1 374 328 129 0 chr4 177090303 177090459 -7198203 - MIR3 SINE MIR 0 208 34 25 31 0 0 chr4 177090498 177090530 -7198132 + AT_rich Low_complexity Low_complexity 1 32 0 258 170 0 0 chr4 177092291 177092338 -7196324 - MIR SINE MIR -64 198 152 2773 165 30 15 chr4 177092371 177092904 -7195758 - MER34 LTR ERV1 -1 541 1 9134 143 29 47 chr4 177093707 177095416 -7193246 + Tigger1 DNA MER2_type 1 1679 -739 947 347 7 20 chr4 177096238 177096676 -7191986 - LTR16B LTR ERVL 0 464 33 209 281 0 47 chr4 177096937 177097001 -7191661 + L2 LINE L2 3207 3267 -5 309 26 0 0 chr4 177097052 177097090 -7191572 + (A)n Simple_repeat Simple_repeat 1 38 0 1909 83 8 0 chr4 177097095 177097347 -7191315 + AluY SINE Alu 1 254 -57 515 159 0 44 chr4 177147350 177147463 -7141199 - THE1C LTR MaLR -267 108 1 28 0 0 0 chr4 177147485 177147513 -7141149 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr4 177149260 177149292 -7139370 + AT_rich Low_complexity Low_complexity 1 32 0 241 295 54 62 chr4 177152216 177152345 -7136317 - L2 LINE L2 -15 3298 3171 535 232 39 61 chr4 177152535 177152716 -7135946 + MER104 DNA Tc2 1 177 -3 425 306 60 8 chr4 177152830 177152964 -7135698 - MIR SINE MIR -41 221 81 22 35 0 0 chr4 177152990 177153019 -7135643 + AT_rich Low_complexity Low_complexity 1 29 0 203 186 23 0 chr4 177153249 177153292 -7135370 - MIR3 SINE MIR -23 185 142 780 82 0 0 chr4 177154651 177154749 -7133913 - THE1C LTR MaLR 0 375 278 199 268 18 0 chr4 177154881 177154937 -7133725 + L2 LINE L2 3242 3298 -15 497 219 16 0 chr4 177155917 177156045 -7132617 + (TATG)n Simple_repeat Simple_repeat 2 131 0 211 269 0 0 chr4 177156384 177156436 -7132226 + L3 LINE CR1 460 511 -1066 29 28 0 0 chr4 177157025 177157061 -7131601 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr4 177157772 177157794 -7130868 + AT_rich Low_complexity Low_complexity 1 22 0 3477 272 71 26 chr4 177158544 177162482 -7126180 - L1ME1 LINE L1 -327 5908 23 254 355 11 111 chr4 177162502 177162764 -7125898 + L2 LINE L2 2994 3229 -43 3843 222 13 11 chr4 177163464 177164495 -7124167 - L1MB7 LINE L1 -15 6169 5134 2214 110 0 7 chr4 177164495 177164796 -7123866 + AluSq SINE Alu 1 299 -14 3843 222 13 11 chr4 177164796 177164988 -7123674 - L1MB7 LINE L1 -1050 5134 4944 412 376 36 0 chr4 177165719 177165884 -7122778 + MIR SINE MIR 21 191 -71 2130 123 0 7 chr4 177166689 177167035 -7121627 + AluSq SINE Alu 1 313 0 257 252 52 0 chr4 177168789 177168944 -7119718 + (TA)n Simple_repeat Simple_repeat 1 163 0 337 309 94 21 chr4 177170330 177170563 -7118099 - L2 LINE L2 -74 3239 2990 78 38 0 0 chr4 177170750 177170856 -7117806 + AT_rich Low_complexity Low_complexity 1 106 0 276 293 64 32 chr4 177170856 177171013 -7117649 - L2 LINE L2 -339 2975 2814 2696 22 0 16 chr4 177172423 177172739 -7115923 - AluYa5 SINE Alu 0 311 1 2124 100 0 17 chr4 177173770 177174086 -7114576 + AluSx SINE Alu 1 311 0 955 341 203 27 chr4 177175397 177176586 -7112076 - L2 LINE L2 -227 3045 2066 2698 96 8 11 chr4 177176586 177176962 -7111700 + THE1C LTR MaLR 1 375 0 955 341 203 27 chr4 177176962 177177744 -7110918 - L2 LINE L2 -1206 2066 720 364 271 58 77 chr4 177178163 177178370 -7110292 + MIR SINE MIR 47 249 -13 368 264 115 27 chr4 177178587 177178735 -7109927 + MIR3 SINE MIR 34 194 -14 192 286 18 0 chr4 177178797 177178853 -7109809 - L2 LINE L2 -189 3083 3027 21 0 0 0 chr4 177179859 177179880 -7108782 + AT_rich Low_complexity Low_complexity 1 21 0 2331 110 0 0 chr4 177181022 177181331 -7107331 - AluSq SINE Alu -4 309 1 438 20 0 0 chr4 177182281 177182332 -7106330 + (TA)n Simple_repeat Simple_repeat 1 51 0 240 268 0 0 chr4 177182490 177182561 -7106101 - L1MC4 LINE L1 -140 7902 7832 1599 168 50 24 chr4 177182578 177182918 -7105744 - THE1C LTR MaLR -26 349 1 1523 176 37 35 chr4 177182926 177183285 -7105377 - THE1C LTR MaLR -15 413 1 8332 143 37 39 chr4 177183285 177184832 -7103830 - THE1C-int LTR MaLR 0 1580 37 1608 127 37 127 chr4 177184846 177185256 -7103406 - THE1C LTR MaLR 0 375 3 642 293 28 5 chr4 177185994 177186206 -7102456 + LTR16C LTR ERVL 275 491 0 602 287 62 40 chr4 177186398 177186518 -7102144 - HAL1 LINE L1 -45 2462 2346 2391 85 0 13 chr4 177186518 177186823 -7101839 - AluSg SINE Alu -9 301 1 602 287 62 40 chr4 177186823 177187106 -7101556 - HAL1 LINE L1 -161 2346 2050 1641 172 45 31 chr4 177187148 177187606 -7101056 + L1MC/D LINE L1 5154 5618 -726 424 210 48 0 chr4 177187611 177187735 -7100927 - HAL1 LINE L1 -480 2027 1898 510 250 189 56 chr4 177187745 177188141 -7100521 - HAL1 LINE L1 -886 1621 1173 * 40850 33 21 1 chr4 177188126 177194152 -7094510 - L1PA2 LINE L1 -3 6152 1 821 302 78 26 chr4 177194294 177194757 -7093905 - HAL1 LINE L1 -1467 1040 554 739 256 117 22 chr4 177194799 177195073 -7093589 - HAL1 LINE L1 -2035 472 173 186 43 0 0 chr4 177196677 177196700 -7091962 + (TAA)n Simple_repeat Simple_repeat 2 24 0 304 357 45 49 chr4 177196940 177197184 -7091478 - MIR SINE MIR -1 261 19 1957 95 4 0 chr4 177198507 177198760 -7089902 - AluSq SINE Alu -59 254 1 693 203 0 0 chr4 177199158 177199281 -7089381 - FLAM_C SINE Alu -20 123 1 258 338 117 19 chr4 177199292 177199446 -7089216 - MIR SINE MIR -74 188 20 526 225 9 27 chr4 177199591 177199702 -7088960 - L2 LINE L2 0 3272 3164 252 269 13 26 chr4 177199978 177200056 -7088606 + MER5B DNA MER1_type 96 172 -6 521 163 20 0 chr4 177200483 177200581 -7088081 - L1MA9 LINE L1 -162 6150 6051 264 87 22 0 chr4 177200587 177200633 -7088029 - MADE1 DNA Mariner 0 80 34 606 149 55 88 chr4 177200822 177201003 -7087659 + L1MA9 LINE L1 6138 6312 0 1028 33 0 33 chr4 177201192 177201314 -7087348 + AluY SINE Alu 19 136 -175 905 104 0 0 chr4 177201315 177201440 -7087222 + AluSg/x SINE Alu 183 307 -5 1830 188 7 0 chr4 177202898 177203242 -7085420 + AluJb SINE Alu 1 346 0 195 313 113 62 chr4 177203280 177203475 -7085187 + MIR SINE MIR 8 212 -50 22 88 0 0 chr4 177203666 177203723 -7084939 + AT_rich Low_complexity Low_complexity 1 57 0 2143 124 3 16 chr4 177205185 177205499 -7083163 + AluSx SINE Alu 1 310 -2 341 273 23 0 chr4 177206061 177206149 -7082513 + L1MC4 LINE L1 6614 6703 -1339 195 162 0 0 chr4 177206151 177206188 -7082474 + (CA)n Simple_repeat Simple_repeat 2 38 0 28 29 0 0 chr4 177206250 177206285 -7082377 + AT_rich Low_complexity Low_complexity 1 35 0 365 324 34 39 chr4 177206442 177206646 -7082016 - L2 LINE L2 -176 3096 2894 877 255 120 38 chr4 177206733 177206970 -7081692 - MLT1I LTR MaLR -11 398 119 2130 123 3 0 chr4 177206970 177207271 -7081391 + AluSp SINE Alu 1 302 -11 877 255 120 38 chr4 177207271 177207401 -7081261 - MLT1I LTR MaLR -290 119 1 557 344 65 51 chr4 177207457 177207526 -7081136 - L2 LINE L2 -583 2731 2664 573 239 62 6 chr4 177207526 177207702 -7080960 - MER5A DNA MER1_type 0 189 4 557 344 65 51 chr4 177207702 177208421 -7080241 - L2 LINE L2 -650 2664 1932 743 0 0 11 chr4 177210744 177210832 -7077830 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 219 69 0 0 chr4 177213063 177213092 -7075570 + (CA)n Simple_repeat Simple_repeat 2 30 0 23 33 0 0 chr4 177213409 177213439 -7075223 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 177213472 177213500 -7075162 + AT_rich Low_complexity Low_complexity 1 28 0 13614 36 1 1 chr4 177213573 177215986 -7072676 - L1PA4 LINE L1 -3 6152 3738 221 0 0 33 chr4 177216304 177216334 -7072328 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 388 315 31 8 chr4 177216551 177216681 -7071981 - MIR3 SINE MIR -14 194 62 260 362 35 17 chr4 177217544 177217652 -7071010 - L2 LINE L2 0 3272 3160 1764 195 65 105 chr4 177217652 177218172 -7070490 - MER70B LTR ERVL -1 577 83 1744 173 0 29 chr4 177218172 177218479 -7070183 - AluJo SINE Alu -14 298 1 1764 195 65 105 chr4 177218479 177218559 -7070103 - MER70B LTR ERVL -495 83 1 203 302 0 0 chr4 177218679 177218732 -7069930 - L2 LINE L2 -1 3271 3219 640 129 0 0 chr4 177219107 177219200 -7069462 - AluSg/x SINE Alu -21 289 197 2240 115 0 3 chr4 177219446 177219751 -7068911 - AluSg SINE Alu -6 304 1 375 23 0 0 chr4 177220396 177220440 -7068222 + (TG)n Simple_repeat Simple_repeat 2 45 0 207 0 0 0 chr4 177220439 177220462 -7068200 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 2027 123 0 16 chr4 177220462 177220770 -7067892 - AluSx SINE Alu -9 303 1 189 152 0 0 chr4 177221327 177221349 -7067313 + A-rich Low_complexity Low_complexity 1 22 -24 1520 150 87 4 chr4 177221349 177221615 -7067047 + AluJb SINE Alu 1 288 -24 189 152 0 0 chr4 177221615 177221638 -7067024 + A-rich Low_complexity Low_complexity 21 46 0 29 0 0 0 chr4 177224696 177224725 -7063937 + AT_rich Low_complexity Low_complexity 1 29 0 1382 218 72 26 chr4 177225031 177225484 -7063178 - MER39 LTR ERV1 0 707 1 393 266 123 25 chr4 177226074 177226277 -7062385 + MIR SINE MIR 6 228 -34 27 87 0 0 chr4 177226395 177226464 -7062198 + AT_rich Low_complexity Low_complexity 1 69 0 378 125 0 42 chr4 177226467 177226563 -7062099 + MER96B DNA MER1_type? 86 177 -240 1807 140 6 40 chr4 177226644 177226965 -7061697 + AluJo SINE Alu 3 312 0 268 200 16 43 chr4 177227085 177227270 -7061392 + (TA)n Simple_repeat Simple_repeat 1 180 0 21 0 0 0 chr4 177227317 177227338 -7061324 + AT_rich Low_complexity Low_complexity 1 21 0 1913 87 0 22 chr4 177227383 177227658 -7061004 + L1PA7 LINE L1 5879 6147 -7 2161 121 3 3 chr4 177227790 177228097 -7060565 + AluSg SINE Alu 1 307 -3 217 303 28 3 chr4 177230291 177230381 -7058281 - MIR SINE MIR -24 184 90 381 43 0 0 chr4 177230399 177230446 -7058216 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 24 67 0 0 chr4 177230959 177231004 -7057658 + AT_rich Low_complexity Low_complexity 1 45 0 256 252 0 97 chr4 177233136 177233239 -7055423 + MIR SINE MIR 120 212 -50 215 283 11 0 chr4 177233988 177234080 -7054582 + (TA)n Simple_repeat Simple_repeat 2 94 0 220 155 28 0 chr4 177234091 177234162 -7054500 + (TA)n Simple_repeat Simple_repeat 2 74 0 411 274 110 20 chr4 177234847 177235036 -7053626 - MIR SINE MIR -61 147 1 267 182 0 0 chr4 177235136 177235180 -7053482 + MIR SINE MIR 219 262 0 549 144 0 10 chr4 177235453 177235557 -7053105 - L1MA5A LINE L1 0 6297 6195 181 236 179 66 chr4 177235578 177235684 -7052978 + L2 LINE L2 2412 2529 -785 1947 181 11 8 chr4 177240664 177241028 -7047634 - MLT1A1 LTR MaLR 0 365 1 209 257 236 29 chr4 177241412 177241552 -7047110 + MIR SINE MIR 23 191 -71 973 182 65 13 chr4 177243365 177243596 -7045066 - L1MA4 LINE L1 -2 6298 6056 21 0 0 0 chr4 177244864 177244885 -7043777 + AT_rich Low_complexity Low_complexity 1 21 0 361 267 25 25 chr4 177246059 177246179 -7042483 + MIR3 SINE MIR 84 203 -5 921 217 0 0 chr4 177246485 177246651 -7042011 + FRAM SINE Alu 1 166 0 1761 126 22 63 chr4 177246786 177247103 -7041559 + AluSp SINE Alu 3 306 -7 898 259 11 57 chr4 177247262 177247524 -7041138 - MIR SINE MIR 0 262 13 2448 71 0 3 chr4 177247627 177247921 -7040741 - AluSq SINE Alu -20 293 1 304 381 98 37 chr4 177248351 177248679 -7039983 - L2 LINE L2 0 3272 2925 234 0 0 0 chr4 177248892 177248918 -7039744 + (GA)n Simple_repeat Simple_repeat 1 26 0 195 42 0 0 chr4 177249238 177249262 -7039400 + (A)n Simple_repeat Simple_repeat 1 24 0 23 54 0 0 chr4 177249812 177249849 -7038813 + AT_rich Low_complexity Low_complexity 1 37 0 201 277 0 36 chr4 177250482 177250565 -7038097 + (CATA)n Simple_repeat Simple_repeat 4 83 0 1240 334 100 21 chr4 177251335 177252143 -7036519 + L3 LINE CR1 629 1500 -77 305 303 56 39 chr4 177252234 177252468 -7036194 + MER112 DNA MER1_type 18 255 -5 2210 113 0 0 chr4 177253371 177253663 -7034999 - AluSq SINE Alu -21 292 1 2207 109 3 6 chr4 177254701 177255012 -7033650 - AluSg SINE Alu 0 310 1 1185 194 31 8 chr4 177255463 177255721 -7032941 + L1MC1 LINE L1 6008 6271 -62 1635 181 0 17 chr4 177256413 177256706 -7031956 + AluJo SINE Alu 1 288 -24 328 290 0 28 chr4 177257804 177257911 -7030751 + CT-rich Low_complexity Low_complexity 2 105 0 231 419 7 7 chr4 177259691 177259827 -7028835 + L3 LINE CR1 1047 1182 -395 342 351 53 16 chr4 177260318 177260506 -7028156 - MIR SINE MIR -47 215 21 225 0 0 0 chr4 177261434 177261459 -7027203 + (TA)n Simple_repeat Simple_repeat 1 25 0 453 36 0 0 chr4 177261459 177261514 -7027148 + (TG)n Simple_repeat Simple_repeat 2 56 0 234 0 0 0 chr4 177263615 177263641 -7025021 + (T)n Simple_repeat Simple_repeat 1 26 0 232 325 31 52 chr4 177266686 177266877 -7021785 + L2 LINE L2 2722 2908 -406 376 339 33 22 chr4 177269580 177269763 -7018899 - MIR SINE MIR -37 225 41 3916 88 17 24 chr4 177270519 177271098 -7017564 + L1PA10 LINE L1 5594 6168 0 2074 101 17 0 chr4 177271224 177271511 -7017151 + AluSp SINE Alu 5 296 -17 561 287 185 5 chr4 177271514 177271730 -7016932 - MIR SINE MIR -7 255 1 2330 89 0 3 chr4 177273124 177273139 -7015523 - AluSg SINE Alu -9 301 287 216 0 0 0 chr4 177273139 177273163 -7015499 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 2330 89 0 3 chr4 177273163 177273449 -7015213 - AluSg SINE Alu -23 287 1 183 212 121 15 chr4 177273598 177273664 -7014998 + L3 LINE CR1 886 958 -619 246 128 0 0 chr4 177275131 177275170 -7013492 + (TG)n Simple_repeat Simple_repeat 2 40 0 227 31 31 0 chr4 177275247 177275279 -7013383 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2536 60 0 16 chr4 177276538 177276854 -7011808 + AluY SINE Alu 1 311 0 27 29 0 0 chr4 177278123 177278157 -7010505 + AT_rich Low_complexity Low_complexity 1 34 0 1853 140 50 0 chr4 177279862 177280141 -7008521 + AluSx SINE Alu 11 303 -9 273 119 0 0 chr4 177281366 177281408 -7007254 + (TGG)n Simple_repeat Simple_repeat 3 44 0 1624 98 14 0 chr4 177282076 177282326 -7006336 - AluSx SINE Alu 0 316 64 24 0 0 0 chr4 177282349 177282373 -7006289 + AT_rich Low_complexity Low_complexity 1 24 0 430 201 127 33 chr4 177282446 177282705 -7005957 - L1ME4a LINE L1 -67 6054 5765 21 36 0 0 chr4 177282858 177282886 -7005776 + AT_rich Low_complexity Low_complexity 1 28 0 814 243 66 4 chr4 177283249 177283492 -7005170 - MIR SINE MIR -3 259 2 256 232 0 0 chr4 177283577 177283646 -7005016 - MER4-int LTR ERV1 -5421 1177 1109 416 274 16 45 chr4 177283762 177283925 -7004737 - MIR SINE MIR -29 179 15 206 300 0 0 chr4 177284510 177284560 -7004102 + L2 LINE L2 3218 3267 -5 207 216 20 20 chr4 177285512 177285563 -7003099 + (TG)n Simple_repeat Simple_repeat 2 52 0 491 322 44 41 chr4 177286267 177286562 -7002100 - L2 LINE L2 -12 3301 3006 206 267 67 42 chr4 177286568 177286688 -7001974 - MER91C DNA MER1_type 0 140 18 308 307 199 12 chr4 177287065 177287306 -7001356 - L2 LINE L2 -797 2517 2232 22 0 0 0 chr4 177288452 177288474 -7000188 + AT_rich Low_complexity Low_complexity 1 22 0 644 140 14 91 chr4 177288832 177288975 -6999687 + FLAM_C SINE Alu 1 132 -1 1034 309 72 11 chr4 177290128 177290572 -6998090 + L2 LINE L2 2585 3058 -255 340 307 24 55 chr4 177290755 177290882 -6997780 + L2 LINE L2 3132 3254 -18 281 328 73 21 chr4 177292282 177292474 -6996188 - MIR SINE MIR -3 259 60 22 0 0 0 chr4 177292867 177292889 -6995773 + AT_rich Low_complexity Low_complexity 1 22 0 213 273 0 0 chr4 177293020 177293075 -6995587 + (TTCA)n Simple_repeat Simple_repeat 1 55 0 3436 204 44 60 chr4 177294663 177295740 -6992922 + L1MC3 LINE L1 6705 7763 -22 1662 155 7 55 chr4 177295817 177296127 -6992535 + AluJo SINE Alu 1 295 -17 266 335 134 11 chr4 177296708 177296887 -6991775 - L2 LINE L2 -4 3309 3109 679 323 163 8 chr4 177297001 177297376 -6991286 - L2 LINE L2 -436 2878 2446 214 73 49 0 chr4 177298059 177298100 -6990562 + GA-rich Low_complexity Low_complexity 1 43 0 234 0 0 0 chr4 177299134 177299160 -6989502 + (A)n Simple_repeat Simple_repeat 1 26 0 25 31 0 0 chr4 177300428 177300460 -6988202 + AT_rich Low_complexity Low_complexity 1 32 0 2613 39 3 0 chr4 177301157 177301465 -6987197 + AluY SINE Alu 1 309 -2 201 179 30 30 chr4 177301560 177301627 -6987035 + (TTTG)n Simple_repeat Simple_repeat 3 69 0 374 295 149 33 chr4 177301729 177302428 -6986234 + HAL1 LINE L1 772 1551 -956 2445 54 0 6 chr4 177302530 177302844 -6985818 - L1PA4 LINE L1 0 6155 5844 2911 35 3 5 chr4 177302844 177303217 -6985445 + L1PA4 LINE L1 5452 5823 -332 322 239 0 0 chr4 177303319 177303390 -6985272 + HAL1 LINE L1 1682 1752 -755 181 203 141 47 chr4 177303673 177303737 -6984925 - L2 LINE L2 -182 3090 3021 288 301 0 12 chr4 177304533 177304616 -6984046 + MIR3 SINE MIR 120 201 -7 196 77 51 0 chr4 177305999 177306038 -6982624 + (CA)n Simple_repeat Simple_repeat 1 41 0 437 49 0 16 chr4 177306335 177306396 -6982266 + (TG)n Simple_repeat Simple_repeat 2 61 0 239 216 20 0 chr4 177306396 177306447 -6982215 + (TA)n Simple_repeat Simple_repeat 2 53 0 246 297 10 109 chr4 177306455 177306512 -6982150 - L2 LINE L2 -36 3236 3192 2552 43 0 0 chr4 177306512 177306815 -6981847 - AluY SINE Alu -8 303 1 246 297 10 109 chr4 177306815 177306858 -6981804 - L2 LINE L2 -80 3192 3146 493 264 144 10 chr4 177306881 177307089 -6981573 + L2 LINE L2 1164 1399 -1915 741 300 32 16 chr4 177308177 177308424 -6980238 - MIR SINE MIR 0 262 12 744 270 74 15 chr4 177308771 177309041 -6979621 - MLT1J2 LTR MaLR -162 288 3 1875 166 0 13 chr4 177310597 177310905 -6977757 - AluJb SINE Alu -8 304 1 831 286 57 4 chr4 177312484 177312732 -6975930 + MIR SINE MIR 2 262 0 1705 191 29 20 chr4 177313109 177313460 -6975202 - MLT1A1 LTR MaLR 0 365 12 2219 92 14 3 chr4 177314032 177314324 -6974338 - AluSx SINE Alu -13 299 5 378 313 16 26 chr4 177314851 177315043 -6973619 - L1ME LINE L1 -454 5667 5478 296 313 54 73 chr4 177315595 177315753 -6972909 - MLT1J LTR MaLR -145 366 213 2252 101 7 0 chr4 177315753 177316049 -6972613 - AluSq SINE Alu -15 298 1 296 313 54 73 chr4 177316049 177316149 -6972513 - MLT1J LTR MaLR -298 213 113 1900 175 24 34 chr4 177316149 177316566 -6972096 - MLT1C LTR MaLR 0 467 55 1435 123 71 0 chr4 177317083 177317315 -6971347 - AluSg/x SINE Alu 0 332 86 563 283 12 29 chr4 177317398 177317571 -6971091 - MIR SINE MIR -83 179 10 241 320 13 13 chr4 177318449 177318524 -6970138 - L2 LINE L2 -12 3301 3227 305 333 20 0 chr4 177320876 177320975 -6967687 - MIR SINE MIR -98 164 64 902 184 48 0 chr4 177321321 177321489 -6967173 + MER5A DNA MER1_type 14 189 0 338 314 186 4 chr4 177321791 177322033 -6966629 + LTR33 LTR ERVL 1 286 -235 1175 122 11 0 chr4 177322371 177322551 -6966111 - L1PA7 LINE L1 0 6154 5973 1862 122 8 4 chr4 177322657 177322787 -6965875 - AluSq SINE Alu -50 263 135 203 0 0 36 chr4 177322787 177322815 -6965847 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1862 122 8 4 chr4 177322815 177322946 -6965716 - AluSq SINE Alu -178 135 1 471 167 19 56 chr4 177323363 177323471 -6965191 + L2 LINE L2 3203 3306 -7 850 122 0 8 chr4 177323513 177323636 -6965026 + FLAM_C SINE Alu 7 128 -15 369 308 0 0 chr4 177324285 177324376 -6964286 - L2 LINE L2 0 3313 3223 1130 203 0 42 chr4 177324438 177324488 -6964174 + AluJo SINE Alu 75 126 -342 2714 23 0 0 chr4 177324488 177324790 -6963872 - AluYb8 SINE Alu -5 313 12 1130 203 0 42 chr4 177324790 177325143 -6963519 + AluJo SINE Alu 126 468 0 567 293 80 19 chr4 177325208 177325631 -6963031 - LTR16B LTR ERVL -1 463 15 23 33 0 0 chr4 177325775 177325805 -6962857 + AT_rich Low_complexity Low_complexity 1 30 0 1689 187 7 10 chr4 177325805 177326094 -6962568 - AluJo SINE Alu -24 288 1 5334 108 17 4 chr4 177327052 177327868 -6960794 - L1MA3 LINE L1 -1 6304 5478 2760 13 0 0 chr4 177328706 177329010 -6959652 + AluYb8 SINE Alu 1 304 -14 201 313 0 48 chr4 177329192 177329275 -6959387 - MIR3 SINE MIR -5 203 125 307 344 39 8 chr4 177330138 177330266 -6958396 - HAL1 LINE L1 -882 1625 1494 338 171 43 0 chr4 177330285 177330355 -6958307 + MLT1J1 LTR MaLR 31 103 -343 3135 153 60 2 chr4 177330420 177331008 -6957654 - L1PB4 LINE L1 -8 6148 5527 1482 73 0 0 chr4 177331259 177331438 -6957224 - AluSp SINE Alu -2 311 133 223 56 93 0 chr4 177331440 177331494 -6957168 + (TA)n Simple_repeat Simple_repeat 2 60 0 319 53 133 0 chr4 177331514 177331665 -6956997 + (TA)n Simple_repeat Simple_repeat 2 172 0 1037 61 23 8 chr4 177331665 177331797 -6956865 - AluSp SINE Alu -179 134 1 276 243 92 76 chr4 177331798 177332049 -6956613 - HAL1 LINE L1 -1051 1456 1202 308 290 65 26 chr4 177332980 177333135 -6955527 + MIR SINE MIR 23 183 -79 1152 171 25 51 chr4 177333138 177333413 -6955249 - MLT1B LTR MaLR -122 268 1 254 330 11 62 chr4 177333674 177333850 -6954812 + L2 LINE L2 2560 2726 -588 2126 116 0 0 chr4 177334390 177334754 -6953908 - AluSp SINE Alu 0 364 1 203 61 30 0 chr4 177335123 177335156 -6953506 + (GA)n Simple_repeat Simple_repeat 1 34 0 2032 115 0 0 chr4 177335619 177335926 -6952736 + AluSx SINE Alu 5 311 0 1113 141 0 0 chr4 177336071 177336227 -6952435 - AluSq SINE Alu -157 156 1 1196 62 0 51 chr4 177336702 177336880 -6951782 + AluSg/x SINE Alu 144 312 0 233 351 11 0 chr4 177337753 177337847 -6950815 - MIR SINE MIR -19 243 149 318 326 57 96 chr4 177338055 177338337 -6950325 + L2 LINE L2 3001 3271 -1 308 284 0 23 chr4 177340532 177340620 -6948042 + MIR SINE MIR 112 197 -65 2116 132 0 0 chr4 177340754 177341083 -6947579 + AluSg SINE Alu 1 310 0 314 245 142 32 chr4 177341713 177341868 -6946794 - MIR SINE MIR -89 173 2 449 299 62 23 chr4 177343209 177343386 -6945276 + L3b LINE CR1 1358 1541 -42 2187 183 98 0 chr4 177343745 177344237 -6944425 - MER34 LTR ERV1 -2 540 1 2587 207 25 44 chr4 177345377 177345723 -6942939 + L1ME1 LINE L1 5446 5797 -369 1452 203 45 24 chr4 177345723 177346053 -6942609 + MER1B DNA MER1_type 1 337 0 2587 207 25 44 chr4 177346053 177346436 -6942226 + L1ME1 LINE L1 5797 6161 -5 210 37 0 0 chr4 177346445 177346472 -6942190 + (CA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr4 177346529 177346551 -6942111 + AT_rich Low_complexity Low_complexity 1 22 0 1190 310 88 42 chr4 177348557 177349334 -6939328 + L2 LINE L2 1894 2705 -609 2367 108 0 0 chr4 177349343 177349649 -6939013 + AluSx SINE Alu 1 306 -6 298 301 245 7 chr4 177349706 177349849 -6938813 + MER5A DNA MER1_type 13 189 0 847 341 59 21 chr4 177349861 177350333 -6938329 + L2 LINE L2 2804 3293 -20 315 283 18 9 chr4 177350555 177350668 -6937994 + Charlie8 DNA MER1_type 113 226 -2191 3082 69 37 2 chr4 177350848 177351280 -6937382 + L1PA13 LINE L1 5715 6161 -2 522 292 102 0 chr4 177354239 177354475 -6934187 - L1ME3A LINE L1 -219 5951 5692 263 246 0 0 chr4 177354483 177354540 -6934122 - Zaphod DNA AcHobo 0 4031 3975 682 198 130 26 chr4 177355315 177355493 -6933169 - MLT1C LTR MaLR 0 467 270 1054 190 0 67 chr4 177355493 177355746 -6932916 - MLT1B LTR MaLR 0 390 155 680 174 7 40 chr4 177355860 177356009 -6932653 - MLT1B LTR MaLR -246 144 1 322 263 151 21 chr4 177356013 177356199 -6932463 - MLT1C LTR MaLR -199 268 59 396 281 76 24 chr4 177356297 177356507 -6932155 - L1ME3A LINE L1 -532 5632 5412 2561 42 0 3 chr4 177358118 177358426 -6930236 + AluY SINE Alu 2 308 -3 420 249 190 23 chr4 177358915 177359136 -6929526 + MIR SINE MIR 5 262 0 1577 119 43 43 chr4 177359299 177359576 -6929086 + AluSc SINE Alu 1 277 -32 1287 44 0 22 chr4 177359577 177359759 -6928903 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 277 313 206 3 chr4 177360217 177360572 -6928090 + L2 LINE L2 2512 2970 -302 332 343 68 35 chr4 177360697 177361094 -6927568 - MLT1K LTR MaLR -99 489 80 821 161 43 85 chr4 177361393 177361548 -6927114 + MER3 DNA MER1_type 6 151 -58 2103 83 48 14 chr4 177361548 177361837 -6926825 - AluSc SINE Alu -10 299 1 821 161 43 85 chr4 177361837 177361892 -6926770 + MER3 DNA MER1_type 151 207 -2 255 250 22 33 chr4 177363204 177363296 -6925366 + GA-rich Low_complexity Low_complexity 3 93 0 182 217 33 33 chr4 177364934 177364994 -6923668 + L2 LINE L2 123 182 -3132 297 0 0 0 chr4 177366625 177366658 -6922004 + (TG)n Simple_repeat Simple_repeat 2 34 0 386 267 169 41 chr4 177367649 177367844 -6920818 + MIR SINE MIR 2 221 -41 1971 197 56 27 chr4 177367863 177368345 -6920317 + Charlie1b DNA MER1_type 1 496 -27 358 283 50 0 chr4 177368558 177368657 -6920005 - MER5A DNA MER1_type -48 141 38 186 43 0 0 chr4 177370416 177370439 -6918223 + (A)n Simple_repeat Simple_repeat 1 23 0 306 0 0 0 chr4 177370449 177370483 -6918179 + (CA)n Simple_repeat Simple_repeat 2 35 0 278 189 0 56 chr4 177370484 177370574 -6918088 + (TA)n Simple_repeat Simple_repeat 2 86 0 193 105 26 53 chr4 177370581 177370657 -6918005 + (TATAA)n Simple_repeat Simple_repeat 5 78 0 2289 199 26 19 chr4 177370666 177371142 -6917520 - MLT2B2 LTR ERVL -35 464 1 227 292 0 62 chr4 177371320 177371416 -6917246 - L2 LINE L2 -4 3268 3179 850 276 70 8 chr4 177373050 177373471 -6915191 + LTR33 LTR ERVL 1 500 -21 1700 159 0 25 chr4 177373554 177373850 -6914812 - AluJo SINE Alu 0 302 14 1426 132 0 0 chr4 177373950 177374190 -6914472 + AluJo SINE Alu 86 325 0 1212 209 4 29 chr4 177374196 177374435 -6914227 + MER8 DNA MER2_type 7 239 0 211 200 0 0 chr4 177374549 177374584 -6914078 + polypurine Low_complexity Low_complexity 2 36 0 2114 134 0 0 chr4 177376280 177376579 -6912083 + AluSx SINE Alu 1 299 -13 786 190 63 6 chr4 177377052 177377210 -6911452 + MIR SINE MIR 47 213 -49 809 258 108 37 chr4 177378067 177378362 -6910300 - MLT1I LTR MaLR -93 316 1 1035 291 65 33 chr4 177378577 177379096 -6909566 - MLT1H LTR MaLR -12 537 2 2272 83 0 7 chr4 177379418 177379738 -6908924 + AluY SINE Alu 2 319 0 455 285 169 25 chr4 177380033 177380223 -6908439 - L2 LINE L2 -262 3010 2849 2228 157 32 62 chr4 177380223 177380662 -6908000 - MSTB LTR MaLR 0 426 1 455 285 169 25 chr4 177380662 177380854 -6907808 - L2 LINE L2 -423 2849 2571 378 243 93 7 chr4 177381036 177381176 -6907486 + Charlie7 DNA MER1_type 6 157 -2455 23489 43 2 1 chr4 177381225 177384750 -6903912 - L1PA5 LINE L1 -2 6152 2626 1737 237 67 55 chr4 177384785 177385173 -6903489 - MLT1E1 LTR MaLR -8 646 245 2099 119 10 10 chr4 177385173 177385476 -6903186 - AluSq SINE Alu -10 303 1 1737 237 67 55 chr4 177385476 177385725 -6902937 - MLT1E1 LTR MaLR -409 245 1 1992 140 45 28 chr4 177385941 177386299 -6902363 - THE1B LTR MaLR 0 364 1 183 100 0 0 chr4 177388260 177388290 -6900372 + (T)n Simple_repeat Simple_repeat 1 30 0 22 56 0 0 chr4 177389098 177389134 -6899528 + AT_rich Low_complexity Low_complexity 1 36 0 203 224 0 15 chr4 177389836 177389903 -6898759 + (CATATA)n Simple_repeat Simple_repeat 6 71 0 1144 166 5 37 chr4 177389918 177389930 -6898732 - MLT2C2 LTR ERVL -253 211 200 2181 110 10 3 chr4 177389930 177390229 -6898433 - AluSc SINE Alu -8 301 1 1144 166 5 37 chr4 177390229 177390433 -6898229 - MLT2C2 LTR ERVL -264 200 2 1363 272 70 17 chr4 177390445 177391068 -6897594 + L2 LINE L2 2466 3110 -203 304 297 119 27 chr4 177391074 177391259 -6897403 - MLT1J2 LTR MaLR -3 447 246 331 299 67 8 chr4 177391280 177391414 -6897248 - MLT1I LTR MaLR -204 205 64 523 229 17 8 chr4 177391490 177391608 -6897054 - MLT1A1 LTR MaLR -246 119 1 316 282 28 63 chr4 177391608 177391750 -6896912 + L2 LINE L2 3128 3264 -49 2226 107 0 0 chr4 177393344 177393643 -6895019 + AluSq SINE Alu 1 299 -14 205 246 18 0 chr4 177393667 177393724 -6894938 + L2 LINE L2 2007 2064 -1250 8721 76 14 22 chr4 177393962 177395596 -6893066 - L1P3 LINE L1 -407 5747 4131 2056 119 17 14 chr4 177395883 177396178 -6892484 + AluSx SINE Alu 6 301 -11 216 359 19 10 chr4 177397830 177397933 -6890729 + L3 LINE CR1 153 256 -1321 189 107 0 0 chr4 177401105 177401133 -6887529 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1909 126 46 3 chr4 177403403 177403688 -6884974 + AluSx SINE Alu 1 297 -15 207 0 0 0 chr4 177404227 177404250 -6884412 + (A)n Simple_repeat Simple_repeat 1 23 0 242 365 56 5 chr4 177404899 177405096 -6883566 + MIR SINE MIR 12 218 -44 265 377 8 0 chr4 177405146 177405268 -6883394 - L2 LINE L2 0 3313 3191 879 232 5 11 chr4 177405270 177405460 -6883202 - MER5A DNA MER1_type 0 189 1 279 0 0 0 chr4 177405479 177405510 -6883152 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1949 83 35 4 chr4 177405512 177405766 -6882896 - AluSc SINE Alu -30 279 18 1674 102 9 0 chr4 177405785 177406011 -6882651 - L1PA8 LINE L1 -3 6169 5942 313 168 168 53 chr4 177406556 177406575 -6882087 + MER5A DNA MER1_type 7 22 -167 2407 66 0 0 chr4 177406575 177406862 -6881800 + AluSq SINE Alu 20 306 -7 313 168 168 53 chr4 177406862 177406973 -6881689 + MER5A DNA MER1_type 22 152 -37 216 299 49 76 chr4 177407328 177407512 -6881150 - L2 LINE L2 -825 2489 2311 * 403 315 35 95 chr4 177407504 177407968 -6880694 - L2 LINE L2 -11 3261 2826 539 310 48 18 chr4 177408083 177408312 -6880350 - MLT1J LTR MaLR -173 338 103 399 326 133 5 chr4 177408948 177409144 -6879518 - MIR SINE MIR -18 244 24 299 250 31 21 chr4 177409295 177409391 -6879271 - MER103 DNA DNA 0 166 70 4903 131 60 16 chr4 177409394 177410235 -6878427 + L1PA16 LINE L1 5280 6157 -9 255 293 112 17 chr4 177410741 177410857 -6877805 - MIR SINE MIR -10 252 126 3109 143 64 23 chr4 177411002 177411534 -6877128 + MER41C LTR ERV1 1 554 0 195 261 135 45 chr4 177415544 177415655 -6873007 + L3 LINE CR1 630 750 -827 923 229 8 55 chr4 177416111 177416270 -6872392 + MIR SINE MIR 3 149 -113 2083 131 0 6 chr4 177416270 177416583 -6872079 + AluSq SINE Alu 1 311 -2 923 229 8 55 chr4 177416583 177416659 -6872003 + MIR SINE MIR 149 227 -35 279 333 55 60 chr4 177417052 177417253 -6871409 - MIR SINE MIR -42 220 21 232 224 35 0 chr4 177417529 177417587 -6871075 + (TATATG)n Simple_repeat Simple_repeat 6 65 0 316 246 16 0 chr4 177417653 177417775 -6870887 + (TA)n Simple_repeat Simple_repeat 1 124 0 27 96 0 0 chr4 177417918 177418001 -6870661 + AT_rich Low_complexity Low_complexity 1 83 0 370 203 0 0 chr4 177418511 177418585 -6870077 + MER97b DNA MER1_type? 469 542 -511 1733 211 49 8 chr4 177418592 177418962 -6869700 - MER97a DNA MER1_type? -499 395 11 1875 189 45 8 chr4 177419491 177419873 -6868789 + MSTD LTR MaLR 1 396 0 516 193 22 96 chr4 177420104 177420239 -6868423 + L2 LINE L2 3189 3313 0 1879 219 86 2 chr4 177420428 177420857 -6867805 - MLT1C LTR MaLR 0 467 3 726 289 50 16 chr4 177421266 177421508 -6867154 - MIR SINE MIR 0 262 13 491 328 73 20 chr4 177423501 177423705 -6864957 + MIR SINE MIR 21 235 -27 198 279 144 29 chr4 177424276 177424380 -6864282 + MIR SINE MIR 88 203 -59 275 318 111 48 chr4 177424464 177424653 -6864009 - MIR SINE MIR -6 256 56 427 273 78 45 chr4 177424823 177425031 -6863631 - MIR SINE MIR -30 232 15 437 0 19 0 chr4 177425923 177425976 -6862686 + (TG)n Simple_repeat Simple_repeat 2 55 0 198 0 0 0 chr4 177426061 177426083 -6862579 + (TTTTC)n Simple_repeat Simple_repeat 3 24 0 1875 148 0 7 chr4 177426098 177426382 -6862280 - AluJb SINE Alu -30 282 1 541 275 6 0 chr4 177426515 177426675 -6861987 + MER103 DNA DNA 6 166 0 24 32 0 0 chr4 177427320 177427351 -6861311 + AT_rich Low_complexity Low_complexity 1 31 0 250 340 92 7 chr4 177428375 177428452 -6860210 + MIR3 SINE MIR 15 84 -124 1165 144 11 0 chr4 177428452 177428640 -6860022 - L1PA16 LINE L1 -2 6164 5975 250 340 92 7 chr4 177428640 177428703 -6859959 + MIR3 SINE MIR 84 167 -41 971 318 76 77 chr4 177428908 177430010 -6858652 + L2 LINE L2 1882 2984 -329 645 329 62 22 chr4 177430141 177430512 -6858150 - L2 LINE L2 -6 3307 2922 210 398 21 11 chr4 177430549 177430642 -6858020 + L2 LINE L2 3137 3230 -42 2464 147 29 2 chr4 177431060 177431476 -6857186 + MER57B LTR ERV1 1 427 -7 21 36 0 0 chr4 177433882 177433910 -6854752 + AT_rich Low_complexity Low_complexity 1 28 0 562 212 119 0 chr4 177435016 177435134 -6853528 + FLAM_C SINE Alu 1 132 -1 50 18 0 0 chr4 177435134 177435191 -6853471 + AT_rich Low_complexity Low_complexity 1 57 0 228 347 178 14 chr4 177435238 177435457 -6853205 - MIR SINE MIR -1 261 7 764 219 12 18 chr4 177435512 177435676 -6852986 - MER5A DNA MER1_type -22 167 5 294 379 21 7 chr4 177435969 177436114 -6852548 + MIR SINE MIR 116 262 0 3134 280 156 23 chr4 177436469 177438104 -6850558 - L2 LINE L2 -991 2323 472 778 295 80 42 chr4 177438380 177438881 -6849781 - L1MC4a LINE L1 -1963 5845 5326 806 196 6 0 chr4 177438895 177439058 -6849604 - L1MD1 LINE L1 -5 6237 6074 28 48 0 0 chr4 177439118 177439160 -6849502 + AT_rich Low_complexity Low_complexity 1 42 0 335 306 52 86 chr4 177439322 177439763 -6848899 - L1MC4a LINE L1 -1310 4836 4411 1970 118 0 7 chr4 177443669 177443949 -6844713 + AluSx SINE Alu 20 297 -15 345 24 0 0 chr4 177445667 177445709 -6842953 + (CA)n Simple_repeat Simple_repeat 1 42 0 446 281 0 39 chr4 177447572 177447700 -6840962 + L2 LINE L2 3187 3309 -4 195 184 0 0 chr4 177447817 177447855 -6840807 + (TA)n Simple_repeat Simple_repeat 2 39 0 34 24 0 0 chr4 177448394 177448435 -6840227 + AT_rich Low_complexity Low_complexity 1 41 0 2185 116 0 0 chr4 177449328 177449629 -6839033 + AluSq SINE Alu 1 301 -12 21 0 0 0 chr4 177452132 177452153 -6836509 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 177453106 177453127 -6835535 + AT_rich Low_complexity Low_complexity 1 21 0 600 238 8 107 chr4 177455712 177455956 -6832706 - L2 LINE L2 0 3313 3094 6609 20 3 0 chr4 177455989 177456751 -6831911 - L1PA3 LINE L1 -1 6154 5391 340 265 67 63 chr4 177456769 177457007 -6831655 - L2 LINE L2 -261 3052 2814 1502 84 31 18 chr4 177457121 177457347 -6831315 - L1PA11 LINE L1 -1 6173 5945 348 389 35 7 chr4 177458743 177458887 -6829775 - L2 LINE L2 -1 3271 3124 23 0 0 0 chr4 177459024 177459047 -6829615 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 177459374 177459402 -6829260 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr4 177462484 177462505 -6826157 + (CA)n Simple_repeat Simple_repeat 1 21 0 189 0 0 0 chr4 177463479 177463500 -6825162 + (TG)n Simple_repeat Simple_repeat 2 22 0 266 293 0 20 chr4 177463505 177463604 -6825058 + (TATATG)n Simple_repeat Simple_repeat 4 100 0 467 296 184 15 chr4 177466183 177466379 -6822283 + MIR SINE MIR 8 236 -26 261 328 164 0 chr4 177466601 177466723 -6821939 - L2 LINE L2 -13 3259 3118 263 194 30 75 chr4 177468872 177468939 -6819723 + L2 LINE L2 3229 3292 -21 328 269 75 30 chr4 177468967 177469101 -6819561 - MIR3 SINE MIR -64 144 5 207 0 0 0 chr4 177469636 177469659 -6819003 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2140 88 0 4 chr4 177469662 177469935 -6818727 - AluSc SINE Alu -37 272 1 202 238 0 0 chr4 177470067 177470109 -6818553 - MIR SINE MIR -6 256 215 2382 92 0 3 chr4 177470176 177470481 -6818181 + AluSg SINE Alu 1 304 -6 421 279 76 35 chr4 177470863 177471035 -6817627 + MIR3 SINE MIR 25 203 -5 1992 145 0 37 chr4 177471392 177471716 -6816946 + AluJo SINE Alu 1 312 0 22 35 0 0 chr4 177475063 177475092 -6813570 + AT_rich Low_complexity Low_complexity 1 29 0 538 319 87 4 chr4 177475170 177475399 -6813263 - MIR SINE MIR 0 262 15 2030 101 14 25 chr4 177476995 177477314 -6811348 + AluSx SINE Alu 1 316 0 1084 76 0 0 chr4 177477862 177478006 -6810656 + L1PA10 LINE L1 6020 6163 -5 237 83 0 0 chr4 177478168 177478204 -6810458 + Alu SINE Alu 253 288 -15 1599 153 28 108 chr4 177478221 177478645 -6810017 - MLT1B LTR MaLR 0 390 1 515 216 245 0 chr4 177480907 177481046 -6807616 - MER5B DNA MER1_type -5 173 1 409 286 101 52 chr4 177481050 177481385 -6807277 + L1MC4a LINE L1 6722 6983 -825 183 318 61 0 chr4 177481431 177481497 -6807165 - L2 LINE L2 0 3313 3244 422 271 247 33 chr4 177481504 177481911 -6806751 - L2 LINE L2 -30 3283 2794 1402 274 118 40 chr4 177481918 177482649 -6806013 - L2 LINE L2 -624 2690 1903 2048 105 3 25 chr4 177482680 177482965 -6805697 + AluSc SINE Alu 1 279 -30 1041 31 23 0 chr4 177482965 177483093 -6805569 - BC200 scRNA scRNA -69 131 1 276 149 0 0 chr4 177483106 177483153 -6805509 + (A)n Simple_repeat Simple_repeat 1 47 0 678 255 39 39 chr4 177483902 177484133 -6804529 + MIR SINE MIR 22 252 -10 2579 133 47 5 chr4 177484378 177484785 -6803877 + MSTA LTR MaLR 3 426 -2 318 291 58 24 chr4 177484992 177485299 -6803363 - MLT1L LTR MaLR -4 611 215 1651 188 0 46 chr4 177486330 177486655 -6802007 + AluJb SINE Alu 1 310 -2 28 29 0 0 chr4 177486887 177486922 -6801740 + AT_rich Low_complexity Low_complexity 1 35 0 679 280 43 10 chr4 177487317 177487621 -6801041 - L1MC4a LINE L1 -1899 5909 5596 554 216 95 0 chr4 177487818 177487966 -6800696 - MER20B DNA MER1_type -612 171 10 835 231 34 63 chr4 177488312 177488342 -6800320 + MIR SINE MIR 2 31 -231 894 162 43 107 chr4 177488342 177488687 -6799975 - MER33 DNA MER1_type 0 324 2 835 231 34 63 chr4 177488687 177488925 -6799737 + MIR SINE MIR 31 262 0 220 224 41 20 chr4 177490784 177490833 -6797829 - MIR SINE MIR -165 97 48 2661 23 0 0 chr4 177491186 177491517 -6797145 + AluYb8 SINE Alu 1 318 0 1829 159 23 14 chr4 177491615 177491968 -6796694 - MLT1A1 LTR MaLR 0 365 10 798 226 34 5 chr4 177492930 177493134 -6795528 - MARNA DNA Mariner -201 385 176 439 350 97 60 chr4 177493228 177493661 -6795001 - L2 LINE L2 -164 3108 2692 2030 9 0 18 chr4 177493661 177493890 -6794772 + AluY SINE Alu 86 310 -1 439 350 97 60 chr4 177493890 177494816 -6793846 - L2 LINE L2 -580 2692 1698 272 245 49 43 chr4 177494926 177495089 -6793573 - L1ME4a LINE L1 -153 5968 5805 1067 240 76 21 chr4 177495552 177495973 -6792689 - HAL1 LINE L1 -671 1836 1393 310 327 37 42 chr4 177496352 177496569 -6792093 + LTR40a LTR ERVL 283 498 -21 1141 303 111 16 chr4 177496592 177497512 -6791150 - HAL1 LINE L1 -1229 1278 104 198 103 0 0 chr4 177497669 177497698 -6790964 + (T)n Simple_repeat Simple_repeat 1 29 0 2032 110 55 14 chr4 177497712 177498003 -6790659 - AluY SINE Alu -8 303 1 38 98 0 0 chr4 177498353 177498475 -6790187 + AT_rich Low_complexity Low_complexity 1 122 0 458 288 43 6 chr4 177498592 177498755 -6789907 - MIR SINE MIR -16 246 78 3310 159 79 39 chr4 177498826 177499562 -6789100 - MER21B LTR ERV1 -1 862 98 300 235 10 31 chr4 177499672 177499770 -6788892 - MER21B LTR ERV1 -767 96 1 3935 124 22 5 chr4 177500495 177501118 -6787544 - MER41B LTR ERV1 -1 634 1 190 281 26 105 chr4 177501465 177501579 -6787083 - L2 LINE L2 -205 3067 2963 238 253 25 25 chr4 177502105 177502184 -6786478 - MLT1J2 LTR MaLR -312 138 60 2450 194 132 0 chr4 177502213 177502806 -6785856 - LTR51 LTR ERV1 0 671 1 1761 147 8 4 chr4 177503610 177503876 -6784786 - AluJb SINE Alu -7 305 39 223 209 0 0 chr4 177503876 177503919 -6784743 - L2 LINE L2 -10 3303 3261 394 296 53 0 chr4 177557594 177557726 -6730936 - MIR SINE MIR -77 185 47 2210 112 0 19 chr4 177557731 177558044 -6730618 - AluSx SINE Alu -1 311 5 566 257 60 32 chr4 177558937 177559155 -6729507 + LTR16C LTR ERVL 251 474 -17 1984 125 3 14 chr4 177559413 177559731 -6728931 - AluSx SINE Alu 0 315 1 262 333 53 8 chr4 177559754 177559886 -6728776 + MIR SINE MIR 109 246 -16 441 0 0 0 chr4 177561129 177561178 -6727484 + (TG)n Simple_repeat Simple_repeat 2 50 0 205 260 39 26 chr4 177562212 177562289 -6726373 + L3 LINE CR1 1153 1230 -347 314 349 86 29 chr4 177562474 177562752 -6725910 + L2 LINE L2 2554 2847 -467 268 389 36 7 chr4 177562949 177563088 -6725574 + L2 LINE L2 3114 3256 -16 387 297 29 0 chr4 177564129 177564267 -6724395 - 7SK RNA RNA -50 143 2 186 311 82 0 chr4 177565230 177565291 -6723371 + L2 LINE L2 3151 3216 -56 315 71 0 0 chr4 177565332 177565374 -6723288 + (CA)n Simple_repeat Simple_repeat 1 42 0 24 0 0 0 chr4 177565566 177565590 -6723072 + AT_rich Low_complexity Low_complexity 1 24 0 712 270 123 37 chr4 177565590 177566211 -6722451 - L1MEd LINE L1 -1130 4999 4331 512 200 80 20 chr4 177566517 177566667 -6721995 - L1MEd LINE L1 -2168 3961 3803 278 352 81 44 chr4 177566733 177567006 -6721656 - MLT1I LTR MaLR -92 317 35 2189 115 0 3 chr4 177567022 177567332 -6721330 + AluSg SINE Alu 7 309 -1 313 342 26 19 chr4 177567369 177567524 -6721138 - L1MEd LINE L1 -2324 3805 3650 844 272 111 38 chr4 177567563 177568371 -6720291 - L1MEd LINE L1 -2469 3660 2794 310 244 67 44 chr4 177568370 177568505 -6720157 - L1MC4 LINE L1 -4 8038 7901 * 334 281 22 0 chr4 177568515 177568604 -6720058 - L1MC4 LINE L1 -1339 6703 6613 206 81 68 27 chr4 177568614 177568688 -6719974 + (TA)n Simple_repeat Simple_repeat 1 77 0 627 294 67 51 chr4 177568708 177569569 -6719093 - L1MEd LINE L1 -4679 1631 701 25 51 0 0 chr4 177570392 177570431 -6718231 + AT_rich Low_complexity Low_complexity 1 39 0 440 296 50 45 chr4 177570495 177570674 -6717988 + MER5A DNA MER1_type 7 186 -3 1740 180 35 52 chr4 177572745 177572878 -6715784 - MSTD LTR MaLR 0 396 262 2432 82 0 0 chr4 177572878 177573182 -6715480 - AluSg SINE Alu -6 304 1 1740 180 35 52 chr4 177573182 177573449 -6715213 - MSTD LTR MaLR -134 262 3 2422 30 0 0 chr4 177573566 177573862 -6714800 + AluY SINE Alu 16 311 0 22 0 0 0 chr4 177574376 177574398 -6714264 + AT_rich Low_complexity Low_complexity 1 22 0 292 311 10 10 chr4 177575850 177575953 -6712709 - L2 LINE L2 -1 3312 3210 225 282 35 12 chr4 177575931 177576016 -6712646 + MER5A DNA MER1_type 80 166 -23 * 360 203 13 25 chr4 177575965 177576044 -6712618 - MER5A DNA MER1_type -105 84 7 225 266 22 29 chr4 177576784 177576923 -6711739 + (TA)n Simple_repeat Simple_repeat 2 139 0 267 331 185 8 chr4 177577417 177577547 -6711115 - MIR3 SINE MIR -16 192 40 339 25 0 0 chr4 177579081 177579121 -6709541 + (TC)n Simple_repeat Simple_repeat 1 40 0 * 360 0 0 0 chr4 177579120 177579160 -6709502 + (CA)n Simple_repeat Simple_repeat 1 40 0 248 326 4 30 chr4 177579211 177579375 -6709287 + CT-rich Low_complexity Low_complexity 1 227 0 26 0 0 0 chr4 177579877 177579903 -6708759 + AT_rich Low_complexity Low_complexity 1 26 0 378 221 0 0 chr4 177580749 177580844 -6707818 + (CA)n Simple_repeat Simple_repeat 1 95 0 197 197 98 49 chr4 177581486 177581547 -6707115 - L2 LINE L2 -1 3271 3208 * 292 304 20 10 chr4 177581522 177581624 -6707038 + MIR SINE MIR 33 135 -73 394 257 124 62 chr4 177581857 177582028 -6706634 - MIR SINE MIR 0 262 74 658 122 47 0 chr4 177582028 177582135 -6706527 + L1MB4 LINE L1 6068 6179 -1 394 257 124 62 chr4 177582135 177582173 -6706489 - MIR SINE MIR -188 74 40 185 387 42 7 chr4 177584609 177584751 -6703911 - MIR SINE MIR -2 260 114 265 188 25 12 chr4 177584980 177585060 -6703602 + GA-rich Low_complexity Low_complexity 3 83 0 892 117 11 28 chr4 177585063 177585243 -6703419 + (GGAA)n Simple_repeat Simple_repeat 4 180 0 264 71 48 0 chr4 177585243 177585285 -6703377 + GA-rich Low_complexity Low_complexity 5 48 0 256 209 149 1 chr4 177585964 177586052 -6702610 + MIR SINE MIR 10 111 -97 * 513 314 143 23 chr4 177586041 177586468 -6702194 - L2 LINE L2 -1 3312 2835 965 141 0 0 chr4 177586521 177586663 -6701999 + FLAM_C SINE Alu 1 142 -1 751 191 0 40 chr4 177586697 177586870 -6701792 + AluSc SINE Alu 132 297 -12 403 320 26 6 chr4 177586879 177587035 -6701627 - L2 LINE L2 -536 2778 2620 797 196 0 0 chr4 177587752 177587895 -6700767 + FLAM_C SINE Alu 1 143 0 1022 156 0 28 chr4 177587913 177588093 -6700569 + AluSc SINE Alu 119 293 -16 349 305 32 7 chr4 177588108 177588262 -6700400 - L2 LINE L2 -537 2777 2620 571 148 119 0 chr4 177588434 177588535 -6700127 - AluJb SINE Alu -28 284 172 196 319 50 25 chr4 177588785 177588904 -6699758 - L2 LINE L2 -6 3307 3186 275 301 67 34 chr4 177589116 177589325 -6699337 - L2 LINE L2 -458 2856 2641 1097 108 0 6 chr4 177589429 177589586 -6699076 + AluSg/x SINE Alu 151 306 -6 242 170 38 0 chr4 177591866 177591919 -6696743 + CT-rich Low_complexity Low_complexity 1 55 0 187 258 0 30 chr4 177592913 177592979 -6695683 - MIR SINE MIR -10 252 189 204 216 0 0 chr4 177594743 177594794 -6693868 + GA-rich Low_complexity Low_complexity 1 51 0 201 281 251 9 chr4 177597029 177597260 -6691402 + L2 LINE L2 1923 2209 -1105 183 318 103 37 chr4 177597380 177597487 -6691175 + L2 LINE L2 3116 3229 -43 563 213 40 121 chr4 177598402 177598674 -6689988 - L1ME3A LINE L1 -5 6165 5916 873 87 40 20 chr4 177599813 177599963 -6688699 + L1MA1 LINE L1 6150 6302 0 2074 236 94 31 chr4 177600326 177601756 -6686906 - L1ME2 LINE L1 -182 6051 4527 2607 248 31 53 chr4 177601763 177602637 -6686025 - L1ME2 LINE L1 -1878 4337 3490 1647 66 0 0 chr4 177602637 177602850 -6685812 - L1PA13 LINE L1 -3 6160 5948 2607 248 31 53 chr4 177602850 177603054 -6685608 - L1ME2 LINE L1 -2725 3490 3283 1544 239 21 39 chr4 177603206 177603394 -6685268 - L1ME2 LINE L1 -2935 3280 3090 2127 116 0 3 chr4 177603394 177603688 -6684974 - AluSx SINE Alu -19 293 1 1544 239 21 39 chr4 177603688 177604059 -6684603 - L1ME2 LINE L1 -3125 3090 2731 261 0 0 0 chr4 177604061 177604090 -6684572 + (TG)n Simple_repeat Simple_repeat 1 29 0 185 62 0 31 chr4 177604094 177604126 -6684536 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2040 106 36 0 chr4 177604128 177604402 -6684260 - AluSg SINE Alu -26 284 1 1094 89 0 0 chr4 177604402 177604537 -6684125 - AluSq/x SINE Alu -176 136 2 508 267 40 49 chr4 177604574 177604821 -6683841 - L1ME2 LINE L1 -3516 2699 2455 610 354 22 0 chr4 177605043 177605354 -6683308 - L1ME2 LINE L1 -6030 366 49 645 271 89 37 chr4 177607906 177608256 -6680406 - MLT1J LTR MaLR -106 405 38 243 226 32 0 chr4 177608625 177608687 -6679975 + GA-rich Low_complexity Low_complexity 1 64 0 648 215 13 4 chr4 177608974 177609210 -6679452 + (TCTA)n Simple_repeat Simple_repeat 1 238 0 250 250 38 25 chr4 177609580 177609660 -6679002 + GA-rich Low_complexity Low_complexity 4 84 0 215 212 10 71 chr4 177610640 177610739 -6677923 + (TAAA)n Simple_repeat Simple_repeat 1 93 0 180 321 18 0 chr4 177611831 177611887 -6676775 - MIR SINE MIR -11 251 195 214 401 129 7 chr4 177612875 177613022 -6675640 + MIR3 SINE MIR 41 205 -3 2400 37 0 24 chr4 177613792 177614088 -6674574 - AluY SINE Alu -14 297 9 1980 151 37 0 chr4 177614612 177614990 -6673672 - L1MB4 LINE L1 -1 6179 5788 21 0 0 0 chr4 177615240 177615261 -6673401 + AT_rich Low_complexity Low_complexity 1 21 0 2271 91 0 0 chr4 177615593 177615880 -6672782 - AluSc SINE Alu -22 287 1 2126 128 0 13 chr4 177616368 177616673 -6671989 - AluSx SINE Alu -11 301 1 222 91 0 0 chr4 177618313 177618346 -6670316 + (CTATT)n Simple_repeat Simple_repeat 3 35 0 2167 120 0 3 chr4 177618347 177618647 -6670015 - AluSx SINE Alu -13 299 1 2282 183 55 31 chr4 177618765 177618806 -6669856 - MLT2B1 LTR ERVL 0 520 481 690 100 0 0 chr4 177618806 177618906 -6669756 + (TA)n Simple_repeat Simple_repeat 2 101 0 249 33 0 0 chr4 177618905 177618935 -6669727 + (TG)n Simple_repeat Simple_repeat 1 30 0 * 2282 183 55 31 chr4 177618906 177619401 -6669261 - MLT2B1 LTR ERVL -39 481 1 1994 165 53 22 chr4 177619415 177619828 -6668834 + MSTB LTR MaLR 1 426 0 255 302 161 25 chr4 177621701 177622055 -6666607 + L2 LINE L2 1917 2318 -996 1140 189 78 92 chr4 177622120 177622490 -6666172 + MLT1A1 LTR MaLR 1 365 0 2103 151 3 3 chr4 177625846 177626158 -6662504 - AluJo SINE Alu 0 312 1 312 387 8 0 chr4 177626595 177626714 -6661948 + MIR3 SINE MIR 87 206 -2 216 0 0 0 chr4 177628575 177628599 -6660063 + (CA)n Simple_repeat Simple_repeat 2 25 0 22 70 0 0 chr4 177629652 177629695 -6658967 + AT_rich Low_complexity Low_complexity 1 43 0 2196 89 0 14 chr4 177629866 177630159 -6658503 - AluSc SINE Alu 0 309 21 222 37 0 0 chr4 177632427 177632454 -6656208 + (CA)n Simple_repeat Simple_repeat 1 27 0 1443 90 0 0 chr4 177632532 177632744 -6655918 - L1P LINE L1 -856 5290 5079 * 2868 63 21 0 chr4 177632742 177633125 -6655537 + L1PA8 LINE L1 5649 6039 -133 330 267 69 0 chr4 177633880 177633981 -6654681 + MIR3 SINE MIR 73 180 -28 1006 295 146 56 chr4 177634081 177634680 -6653982 + L2 LINE L2 2034 2578 -735 631 194 0 0 chr4 177634680 177634809 -6653853 + L1MA3 LINE L1 6177 6305 0 1006 295 146 56 chr4 177634809 177635075 -6653587 + L2 LINE L2 2578 2819 -494 2054 123 21 66 chr4 177635075 177635456 -6653206 + THE1B LTR MaLR 1 364 0 1006 295 146 56 chr4 177635456 177635683 -6652979 + L2 LINE L2 2819 3305 -8 322 128 0 0 chr4 177635989 177636036 -6652626 - AluJ/FRAM SINE Alu -31 271 225 770 146 8 0 chr4 177637022 177637152 -6651510 - FLAM_A SINE Alu -4 138 8 1594 135 0 27 chr4 177637191 177637451 -6651211 - AluSx SINE Alu -11 301 49 477 283 43 32 chr4 177637571 177637758 -6650904 - Charlie8 DNA MER1_type -2143 274 86 34 42 0 0 chr4 177638744 177638792 -6649870 + AT_rich Low_complexity Low_complexity 1 48 0 325 297 152 14 chr4 177639524 177639662 -6649000 + MIR SINE MIR 36 192 -70 449 281 89 65 chr4 177640569 177640598 -6648064 - L1ME4a LINE L1 -140 5981 5954 2013 90 102 0 chr4 177640598 177640864 -6647798 + AluSg SINE Alu 1 293 -17 449 281 89 65 chr4 177640864 177640931 -6647731 - L1ME4a LINE L1 -167 5954 5890 321 26 0 0 chr4 177640931 177640969 -6647693 + (TG)n Simple_repeat Simple_repeat 2 39 0 753 175 8 0 chr4 177640970 177641090 -6647572 - FLAM_C SINE Alu -12 121 1 449 281 89 65 chr4 177641090 177641360 -6647302 - L1ME4a LINE L1 -230 5891 5603 1853 121 82 18 chr4 177642819 177643101 -6645561 + AluSx SINE Alu 1 300 -12 2368 133 137 6 chr4 177643644 177644126 -6644536 - LTR10A LTR ERV1 -64 545 1 259 122 41 0 chr4 177644149 177644198 -6644464 - LTR10B LTR ERV1 -496 51 1 342 367 51 5 chr4 177644300 177644496 -6644166 + L2 LINE L2 2587 2791 -523 210 343 0 0 chr4 177645166 177645236 -6643426 - MIR SINE MIR -6 256 187 394 176 0 29 chr4 177645948 177646050 -6642612 + GA-rich Low_complexity Low_complexity 2 100 0 285 318 68 15 chr4 177646244 177646376 -6642286 + L2 LINE L2 2683 2821 -493 292 316 46 122 chr4 177646403 177646732 -6641930 + L2 LINE L2 2920 3223 -49 2166 108 10 0 chr4 177646910 177647207 -6641455 + AluSc SINE Alu 1 300 -9 544 255 13 82 chr4 177647395 177647626 -6641036 - L2 LINE L2 -7 3306 3092 2278 129 0 0 chr4 177647964 177648275 -6640387 - AluSx SINE Alu -1 311 1 21 57 0 0 chr4 177648563 177648598 -6640064 + AT_rich Low_complexity Low_complexity 1 35 0 29 28 0 0 chr4 177649200 177649236 -6639426 + AT_rich Low_complexity Low_complexity 1 36 0 252 0 0 0 chr4 177649688 177649716 -6638946 + (TG)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr4 177650028 177650050 -6638612 + AT_rich Low_complexity Low_complexity 1 22 0 22757 33 1 0 chr4 177650050 177653576 -6635086 - L1PA3 LINE L1 -3 6152 2624 23 0 0 0 chr4 177654122 177654145 -6634517 + AT_rich Low_complexity Low_complexity 1 23 0 1973 216 17 19 chr4 177654284 177654748 -6633914 + LTR40c LTR ERVL 1 463 -2 29607 100 7 21 chr4 177657026 177663488 -6625174 + L1PA7 LINE L1 2 6467 -2 252 0 0 0 chr4 177664362 177664390 -6624272 + (TG)n Simple_repeat Simple_repeat 1 28 0 184 256 23 0 chr4 177666314 177666357 -6622305 + L2 LINE L2 3266 3309 -4 2108 116 7 10 chr4 177666423 177666715 -6621947 + AluSx SINE Alu 1 291 -21 230 327 67 123 chr4 177666846 177667146 -6621516 - L2 LINE L2 -18 3254 2972 663 341 128 16 chr4 177667152 177667883 -6620779 - L2 LINE L2 -28 3285 2461 292 360 0 9 chr4 177668470 177668581 -6620081 - MIR3 SINE MIR -2 206 97 202 324 128 20 chr4 177668665 177668813 -6619849 + MIR SINE MIR 98 261 -1 456 287 136 68 chr4 177670698 177671022 -6617640 - L2 LINE L2 -2 3311 2966 1060 297 76 8 chr4 177671066 177671423 -6617239 - L2 LINE L2 -581 2733 2353 296 306 100 19 chr4 177671518 177671829 -6616833 - L1MEd LINE L1 -4892 1227 892 446 350 110 46 chr4 177671854 177672573 -6616089 - L1MEd LINE L1 -5248 871 107 2627 168 32 16 chr4 177674386 177674892 -6613770 - MLT2B2 LTR ERVL -1 514 1 183 186 0 0 chr4 177676174 177676217 -6612445 + (CA)n Simple_repeat Simple_repeat 2 44 0 433 331 93 10 chr4 177676397 177676699 -6611963 - L1MC/D LINE L1 -2047 5761 5435 304 308 9 9 chr4 177677278 177677385 -6611277 + MIR SINE MIR 48 154 -108 182 280 27 27 chr4 177677428 177677503 -6611159 - L2 LINE L2 -20 3252 3178 200 215 25 114 chr4 177677842 177677921 -6610741 - L3b LINE CR1 -271 1312 1241 24 32 0 0 chr4 177678702 177678733 -6609929 + AT_rich Low_complexity Low_complexity 1 31 0 2270 95 0 7 chr4 177678733 177679029 -6609633 - AluSg SINE Alu -16 294 1 998 263 115 46 chr4 177679723 177680295 -6608367 + L2 LINE L2 2440 3099 -214 3058 83 30 7 chr4 177680295 177680731 -6607931 + LTR7 LTR ERV1 3 448 -2 998 263 115 46 chr4 177680731 177680942 -6607720 + L2 LINE L2 3099 3294 -19 2025 146 0 3 chr4 177681074 177681368 -6607294 + AluJb SINE Alu 3 295 -17 194 305 74 53 chr4 177683316 177683411 -6605251 - MIR SINE MIR -59 203 107 353 279 29 19 chr4 177683437 177683541 -6605121 - MIR SINE MIR -12 250 146 270 160 0 0 chr4 177683569 177683619 -6605043 + (CACCAT)n Simple_repeat Simple_repeat 1 50 0 1229 93 6 0 chr4 177683858 177684020 -6604642 + AluSg/x SINE Alu 144 306 -3 428 206 38 44 chr4 177684077 177684098 -6604564 - L1MA10 LINE L1 0 6334 6314 2456 211 125 55 chr4 177684098 177685353 -6603309 - L1ME1 LINE L1 -8 6158 4824 412 243 75 0 chr4 177685692 177685799 -6602863 - L2 LINE L2 -266 3047 2933 1893 163 64 3 chr4 177686278 177686622 -6602040 - MLT1A1 LTR MaLR 0 365 1 478 285 8 15 chr4 177686738 177686868 -6601794 + L2 LINE L2 3180 3308 -5 433 266 25 124 chr4 177689472 177689754 -6598908 + L2 LINE L2 3014 3267 -5 2028 84 4 0 chr4 177691731 177691994 -6596668 - AluY SINE Alu -9 302 39 21 36 0 0 chr4 177695425 177695453 -6593209 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 177695517 177695540 -6593122 + AT_rich Low_complexity Low_complexity 1 23 0 241 230 0 40 chr4 177696175 177696249 -6592413 - L1MC4 LINE L1 -646 7396 7326 293 222 3 3 chr4 177696258 177696345 -6592317 - L1MC5 LINE L1 -733 7228 7157 305 198 12 0 chr4 177697252 177697338 -6591324 + CT-rich Low_complexity Low_complexity 2 88 0 207 338 63 42 chr4 177697612 177697754 -6590908 + MIR SINE MIR 112 256 -6 770 127 13 33 chr4 177699000 177699150 -6589512 + L1MB1 LINE L1 6016 6162 -6 281 26 0 26 chr4 177699268 177699307 -6589355 + (TC)n Simple_repeat Simple_repeat 2 39 0 215 205 0 0 chr4 177699314 177699353 -6589309 + (TG)n Simple_repeat Simple_repeat 2 40 0 186 318 100 27 chr4 177699640 177699750 -6588912 + MIR SINE MIR 37 154 -108 21 36 0 0 chr4 177701136 177701164 -6587498 + AT_rich Low_complexity Low_complexity 1 28 0 925 194 0 0 chr4 177701259 177701424 -6587238 - FRAM SINE Alu 0 166 2 489 250 35 0 chr4 177701543 177701659 -6587003 + L2 LINE L2 3193 3312 -1 1691 189 0 10 chr4 177701887 177702183 -6586479 - AluJo SINE Alu -19 293 1 1633 158 13 60 chr4 177702453 177702770 -6585892 + AluJb SINE Alu 1 302 -10 236 285 92 53 chr4 177703556 177703763 -6584899 - L2 LINE L2 -37 3276 3062 1289 150 29 124 chr4 177703763 177704069 -6584593 + AluJo SINE Alu 1 277 -35 293 333 54 0 chr4 177704114 177704225 -6584437 - L2 LINE L2 -254 3059 2943 605 300 78 8 chr4 177704233 177704490 -6584172 - LTR16B LTR ERVL -65 399 125 481 276 52 73 chr4 177704546 177704599 -6584063 - L2 LINE L2 -379 2935 2882 2343 105 0 0 chr4 177704599 177704903 -6583759 + AluSx SINE Alu 1 304 -8 481 276 52 73 chr4 177704903 177705081 -6583581 - L2 LINE L2 -432 2882 2709 1943 169 32 53 chr4 177705106 177705449 -6583213 - L1PB4 LINE L1 -11 6145 5813 2231 123 0 0 chr4 177705449 177705751 -6582911 - AluSx SINE Alu -10 302 1 1943 169 32 53 chr4 177705751 177705881 -6582781 - L1PB4 LINE L1 -343 5813 5682 660 264 33 45 chr4 177705885 177706127 -6582535 - L2 LINE L2 -607 2707 2469 1187 133 10 100 chr4 177706134 177706434 -6582228 - MLT1B LTR MaLR -7 383 111 1933 150 3 0 chr4 177706445 177706732 -6581930 - AluSx SINE Alu -24 288 1 248 235 59 0 chr4 177706790 177706858 -6581804 - MLT1B LTR MaLR -395 72 1 885 260 169 44 chr4 177706859 177707267 -6581395 - L2 LINE L2 -850 2464 2006 626 280 81 11 chr4 177707369 177707555 -6581107 + MIR SINE MIR 1 199 -63 241 262 49 0 chr4 177707649 177707710 -6580952 - MIR SINE MIR -152 110 47 325 294 18 22 chr4 177708478 177708634 -6580028 - MIR3 SINE MIR -5 203 45 2312 104 3 0 chr4 177708680 177708989 -6579673 + AluSg SINE Alu 1 310 0 522 0 0 0 chr4 177709411 177709469 -6579193 + (TA)n Simple_repeat Simple_repeat 2 59 0 406 245 35 0 chr4 177710029 177710141 -6578521 - MIR SINE MIR -46 162 41 209 196 0 0 chr4 177710157 177710203 -6578459 + T-rich Low_complexity Low_complexity 3 48 0 268 177 51 51 chr4 177710752 177710831 -6577831 - MER116 DNA Mariner -1 79 1 405 0 0 0 chr4 177715103 177715148 -6573514 + (TG)n Simple_repeat Simple_repeat 1 45 0 240 212 47 47 chr4 177717198 177717283 -6571379 + L1ME4a LINE L1 5964 6048 -73 180 283 55 48 chr4 177717300 177717445 -6571217 + L2 LINE L2 2263 2408 -906 439 188 12 12 chr4 177717490 177717570 -6571092 - MIR SINE MIR -163 99 20 653 299 6 0 chr4 177718863 177719040 -6569622 - MIR SINE MIR 0 262 85 26 0 0 0 chr4 177724033 177724059 -6564603 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr4 177724179 177724201 -6564461 + AT_rich Low_complexity Low_complexity 1 22 0 281 238 0 0 chr4 177724803 177724883 -6563779 + T-rich Low_complexity Low_complexity 1 80 0 2313 118 0 3 chr4 177725320 177725633 -6563029 + AluSx SINE Alu 1 312 0 230 327 173 0 chr4 177725998 177726102 -6562560 - MIR SINE MIR -17 245 124 466 313 185 31 chr4 177726413 177727206 -6561456 - L2 LINE L2 -18 3295 2375 273 200 0 31 chr4 177728040 177728105 -6560557 + MIR SINE MIR 109 171 -91 503 338 61 0 chr4 177729127 177729340 -6559322 + MIR SINE MIR 2 227 -35 189 107 0 0 chr4 177731060 177731088 -6557574 + (T)n Simple_repeat Simple_repeat 1 28 0 21 36 0 0 chr4 177733549 177733577 -6555085 + AT_rich Low_complexity Low_complexity 1 28 0 9168 194 25 19 chr4 177733989 177735912 -6552750 - L1 LINE L1 -1600 4546 2606 1468 172 143 29 chr4 177735912 177736296 -6552366 - MSTA LTR MaLR 0 428 1 9168 194 25 19 chr4 177736296 177736574 -6552088 - L1 LINE L1 -3540 2606 2331 27 62 0 0 chr4 177736694 177736742 -6551920 + AT_rich Low_complexity Low_complexity 1 48 0 252 0 0 0 chr4 177736979 177737007 -6551655 + (TTG)n Simple_repeat Simple_repeat 3 30 0 21030 138 15 4 chr4 177737008 177740873 -6547789 - L1PA10 LINE L1 -11 6157 2233 1899 159 58 3 chr4 177740873 177741218 -6547444 - THE1B LTR MaLR 0 364 1 21030 138 15 4 chr4 177741218 177741920 -6546742 - L1PA10 LINE L1 -3935 2233 1540 470 324 98 70 chr4 177742173 177742701 -6545961 + L2 LINE L2 2599 3159 -113 2326 86 3 0 chr4 177742701 177742993 -6545669 - AluSx SINE Alu -19 293 1 470 324 98 70 chr4 177742993 177743111 -6545551 + L2 LINE L2 3159 3272 0 2197 113 3 3 chr4 177743648 177743950 -6544712 - AluSx SINE Alu -10 302 1 1077 158 0 0 chr4 177744333 177744497 -6544165 - FRAM SINE Alu -1 165 2 24 32 0 0 chr4 177744813 177744844 -6543818 + AT_rich Low_complexity Low_complexity 1 31 0 622 280 43 28 chr4 177744864 177745075 -6543587 - MIR SINE MIR -31 231 18 2260 93 3 0 chr4 177745246 177745535 -6543127 - AluSq SINE Alu -23 290 1 212 83 0 28 chr4 177746935 177746971 -6541691 + (TG)n Simple_repeat Simple_repeat 2 36 0 9160 120 8 0 chr4 177747582 177747605 -6541057 - L1PA8A LINE L1 -1 6445 6424 189 0 0 0 chr4 177747605 177747626 -6541036 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 9160 120 8 0 chr4 177747626 177749765 -6538897 - L1PA8A LINE L1 -22 6424 4274 13763 151 14 21 chr4 177749766 177753665 -6534997 - L1PA8A LINE L1 -2528 3933 1 30 97 0 0 chr4 177753918 177754011 -6534651 + AT_rich Low_complexity Low_complexity 1 93 0 907 331 176 18 chr4 177754342 177755181 -6533481 + L2 LINE L2 1911 2882 -432 1154 264 89 43 chr4 177755187 177755748 -6532914 + MLT1G1 LTR MaLR 9 595 0 246 23 70 0 chr4 177756498 177756541 -6532121 + A-rich Low_complexity Low_complexity 3 48 0 213 183 43 43 chr4 177757373 177757466 -6531196 + (TA)n Simple_repeat Simple_repeat 1 93 0 352 281 0 0 chr4 177757466 177757555 -6531107 - L1MC4 LINE L1 -1339 6703 6615 366 269 121 0 chr4 177757680 177757821 -6530841 - MER117 DNA MER1_type -37 160 3 243 0 0 0 chr4 177758903 177758930 -6529732 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2087 82 45 0 chr4 177758932 177759199 -6529463 - AluSg SINE Alu -31 279 1 335 368 129 0 chr4 177762127 177762320 -6526342 - MIR SINE MIR 0 262 45 1661 137 50 36 chr4 177763025 177763327 -6525335 - AluJb SINE Alu 0 306 1 2243 100 0 10 chr4 177763435 177763735 -6524927 + AluSx SINE Alu 1 297 -15 1819 109 20 3 chr4 177763754 177764048 -6524614 + L1MA5A LINE L1 5999 6297 0 325 304 93 25 chr4 177764079 177764240 -6524422 + L2 LINE L2 2710 2881 -433 24 0 0 0 chr4 177764250 177764274 -6524388 + AT_rich Low_complexity Low_complexity 1 24 0 2099 140 102 24 chr4 177764292 177764714 -6523948 - L1PA16 LINE L1 -3 6163 5709 205 375 83 72 chr4 177764743 177765092 -6523570 + L2 LINE L2 2920 3272 0 3503 149 43 21 chr4 177765223 177765900 -6522762 + L1PA16 LINE L1 5471 6162 -4 21 0 0 0 chr4 177767221 177767242 -6521420 + AT_rich Low_complexity Low_complexity 1 21 0 6234 120 16 36 chr4 177767906 177768373 -6520289 - L1MA2 LINE L1 0 6304 5829 2548 62 0 0 chr4 177768373 177768680 -6519982 - AluY SINE Alu -4 307 1 6234 120 16 36 chr4 177768680 177769176 -6519486 - L1MA2 LINE L1 -475 5829 5325 3282 59 5 5 chr4 177769176 177769600 -6519062 - L1PA6 LINE L1 0 6154 5731 6234 120 16 36 chr4 177769600 177770423 -6518239 - L1MA2 LINE L1 -979 5325 4541 1171 233 4 0 chr4 177773336 177773568 -6515094 + AluJb SINE Alu 1 233 -79 326 312 83 19 chr4 177773780 177773937 -6514725 + MIR SINE MIR 23 189 -73 1417 175 32 8 chr4 177774015 177774119 -6514543 + AluJo SINE Alu 25 125 -187 294 29 0 0 chr4 177774119 177774154 -6514508 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1417 175 32 8 chr4 177774154 177774300 -6514362 + AluJo SINE Alu 125 281 -31 2285 103 3 3 chr4 177774851 177775152 -6513510 + AluSc SINE Alu 1 301 -8 937 248 39 0 chr4 177777316 177777522 -6511140 + MER20 DNA MER1_type 6 219 0 596 241 0 0 chr4 177778383 177778495 -6510167 - FLAM_A SINE Alu -30 112 1 200 313 0 31 chr4 177778673 177778737 -6509925 + L2 LINE L2 3252 3313 0 193 261 169 82 chr4 177779358 177779542 -6509120 + L2 LINE L2 2699 2898 -416 304 270 34 11 chr4 177779656 177779745 -6508917 - L2 LINE L2 -9 3263 3173 705 154 31 0 chr4 177779874 177780004 -6508658 + L1MA2 LINE L1 6047 6180 -124 1052 115 6 13 chr4 177780025 177780181 -6508481 + L1MA2 LINE L1 6150 6304 0 183 310 170 20 chr4 177780220 177780320 -6508342 - L2 LINE L2 -246 3067 2953 1953 131 11 3 chr4 177780444 177780771 -6507891 + AluJb SINE Alu 3 331 0 189 0 0 0 chr4 177782684 177782705 -6505957 + (GA)n Simple_repeat Simple_repeat 2 22 0 1826 141 36 16 chr4 177782787 177783093 -6505569 - AluJo SINE Alu 0 312 1 336 24 0 0 chr4 177784338 177784379 -6504283 + (TG)n Simple_repeat Simple_repeat 1 41 0 1840 134 0 76 chr4 177785025 177785339 -6503323 + AluJo SINE Alu 7 296 -16 1644 185 21 0 chr4 177785366 177785652 -6503010 + AluJo SINE Alu 14 305 -7 2157 168 3 29 chr4 177785663 177786009 -6502653 - MER1B DNA MER1_type 0 337 1 1519 170 20 20 chr4 177787070 177787364 -6501298 + AluJo SINE Alu 2 295 -17 21 0 0 0 chr4 177787368 177787389 -6501273 + AT_rich Low_complexity Low_complexity 1 21 0 283 270 60 50 chr4 177789050 177789150 -6499512 - L2 LINE L2 -12 3301 3201 481 251 172 12 chr4 177789397 177789560 -6499102 + MIR SINE MIR 19 207 -55 2499 40 7 17 chr4 177789689 177789988 -6498674 + AluY SINE Alu 1 296 -15 2146 143 113 42 chr4 177790370 177790420 -6498242 - MSTA LTR MaLR 0 428 383 2112 134 0 0 chr4 177790420 177790725 -6497937 - AluSx SINE Alu -6 306 2 2146 143 113 42 chr4 177790725 177791074 -6497588 - MSTA LTR MaLR -45 383 1 1776 222 31 5 chr4 177791318 177791706 -6496956 - L1M4 LINE L1 -445 5729 5332 193 361 0 0 chr4 177791813 177791874 -6496788 + MIR SINE MIR 42 102 -106 25 0 0 0 chr4 177791931 177791956 -6496706 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr4 177791991 177792014 -6496648 + (TA)n Simple_repeat Simple_repeat 2 24 0 2394 49 0 3 chr4 177792020 177792305 -6496357 + AluY SINE Alu 1 284 -27 201 343 143 50 chr4 177793425 177793565 -6495097 - MIR SINE MIR -87 175 23 279 122 0 0 chr4 177795078 177795127 -6493535 + (CA)n Simple_repeat Simple_repeat 2 50 0 321 299 71 47 chr4 177795334 177795545 -6493117 - L2 LINE L2 -206 3066 2851 1909 150 7 0 chr4 177795728 177796014 -6492648 + AluSx SINE Alu 1 288 -24 1249 111 0 0 chr4 177796825 177796997 -6491665 - AluSg/x SINE Alu 0 312 141 1062 166 54 10 chr4 177796999 177797204 -6491458 - L1MA4 LINE L1 -19 6281 6068 202 28 28 28 chr4 177797324 177797360 -6491302 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 327 123 3 0 chr4 177797781 177797835 -6490827 + MLT1B LTR MaLR 241 310 -79 1951 170 45 24 chr4 177798217 177798407 -6490255 + MLT1B LTR MaLR 6 190 -200 2398 124 16 29 chr4 177798407 177798787 -6489875 - THE1C LTR MaLR 0 375 1 1951 170 45 24 chr4 177798787 177798973 -6489689 + MLT1B LTR MaLR 190 390 0 251 210 16 65 chr4 177799277 177799339 -6489323 - MIR3 SINE MIR -22 186 128 455 239 54 65 chr4 177800461 177800583 -6488079 - Charlie8 DNA MER1_type -122 219 98 2356 92 0 7 chr4 177800583 177800889 -6487773 - AluSc SINE Alu -5 304 1 455 239 54 65 chr4 177800889 177800950 -6487712 - Charlie8 DNA MER1_type -243 98 38 1540 169 81 11 chr4 177801311 177801584 -6487078 - AluJo SINE Alu -20 292 1 2212 91 37 0 chr4 177801596 177801893 -6486769 - AluSc SINE Alu -1 308 1 834 257 82 0 chr4 177802099 177802305 -6486357 - MER58A DNA MER1_type 0 224 2 183 360 0 0 chr4 177802965 177803015 -6485647 - L2 LINE L2 -252 3061 3012 * 489 282 48 8 chr4 177803012 177803136 -6485526 - L2 LINE L2 0 3313 3185 195 382 9 18 chr4 177803130 177803240 -6485422 - L2 LINE L2 -255 3017 2909 * 372 246 100 0 chr4 177803306 177803416 -6485246 + MER94 DNA DNA 5 125 -9 1028 171 24 47 chr4 177803416 177803627 -6485035 + AluJo SINE Alu 87 292 -20 2198 111 3 7 chr4 177803636 177803942 -6484720 + AluSc SINE Alu 4 308 -1 333 337 15 55 chr4 177803982 177804255 -6484407 - L2 LINE L2 -590 2724 2463 2276 78 32 0 chr4 177804626 177804909 -6483753 + AluY SINE Alu 1 292 -19 335 295 126 14 chr4 177805681 177805959 -6482703 + L1ME4a LINE L1 5801 6109 -12 1727 180 3 0 chr4 177806101 177806395 -6482267 + AluJb SINE Alu 1 295 -17 376 318 92 0 chr4 177806405 177806579 -6482083 + MIR SINE MIR 69 257 -5 2406 88 0 28 chr4 177806686 177807003 -6481659 + AluSg SINE Alu 1 308 -2 356 143 0 83 chr4 177807426 177807463 -6481199 - L1MC5 LINE L1 -53 7908 7880 2467 148 11 8 chr4 177807463 177807827 -6480835 - MLT1A1 LTR MaLR 0 365 1 356 143 0 83 chr4 177807827 177807873 -6480789 - L1MC5 LINE L1 -81 7880 7832 2620 21 0 0 chr4 177811986 177812275 -6476387 - AluY SINE Alu -19 292 4 2044 153 71 5 chr4 177812564 177812944 -6475718 + L1MA6 LINE L1 5893 6297 -3 1044 89 15 0 chr4 177812976 177813111 -6475551 + AluSq/x SINE Alu 2 138 -175 2330 60 32 0 chr4 177813111 177813394 -6475268 + AluY SINE Alu 1 292 -19 335 295 126 14 chr4 177814166 177814444 -6474218 + L1ME4a LINE L1 5801 6109 -12 1727 180 3 0 chr4 177814586 177814880 -6473782 + AluJb SINE Alu 1 295 -17 376 318 92 0 chr4 177814890 177815064 -6473598 + MIR SINE MIR 69 257 -5 2406 88 0 28 chr4 177815171 177815488 -6473174 + AluSg SINE Alu 1 308 -2 356 143 0 83 chr4 177815911 177815948 -6472714 - L1MC5 LINE L1 -53 7908 7880 2467 148 11 8 chr4 177815948 177816312 -6472350 - MLT1A1 LTR MaLR 0 365 1 356 143 0 83 chr4 177816312 177816358 -6472304 - L1MC5 LINE L1 -81 7880 7832 265 359 31 23 chr4 177820710 177820838 -6467824 + MIR3 SINE MIR 14 142 -66 283 207 18 144 chr4 177821775 177821886 -6466776 + L2 LINE L2 3176 3272 0 2080 87 0 0 chr4 177822463 177822729 -6465933 + AluY SINE Alu 35 300 -11 1468 195 55 23 chr4 177822758 177823106 -6465556 + MLT1A1 LTR MaLR 7 365 0 227 345 45 9 chr4 177823108 177823218 -6465444 - MIR SINE MIR -65 143 30 22 35 0 0 chr4 177823881 177823910 -6464752 + AT_rich Low_complexity Low_complexity 1 29 0 347 320 108 79 chr4 177824395 177824801 -6463861 - L3b LINE CR1 -10 1573 1156 317 270 66 7 chr4 177825296 177825433 -6463229 - LTR50 LTR ERVL -143 652 508 464 245 45 39 chr4 177825618 177825773 -6462889 - LTR50 LTR ERVL -639 156 1 1723 139 23 4 chr4 177825938 177826196 -6462466 + AluSx SINE Alu 5 267 -45 234 91 0 0 chr4 177826204 177826237 -6462425 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 1658 182 20 17 chr4 177826242 177826538 -6462124 + AluJo SINE Alu 1 297 -15 1170 181 91 8 chr4 177827662 177827916 -6460746 - ORSL DNA AcHobo 0 275 1 2282 99 0 7 chr4 177828119 177828422 -6460240 - AluSg SINE Alu -9 301 1 303 270 90 56 chr4 177828778 177828892 -6459770 + L1M4c LINE L1 989 1113 -5271 4521 128 8 55 chr4 177828892 177829744 -6458918 + L1MA4 LINE L1 5483 6294 -6 303 270 90 56 chr4 177829744 177829807 -6458855 + L1M4c LINE L1 1113 1172 -5212 1105 165 0 6 chr4 177829843 177830025 -6458637 + AluJb SINE Alu 120 300 -12 1090 199 75 132 chr4 177830025 177830807 -6457855 + L1MC5 LINE L1 6789 7526 -435 341 256 98 79 chr4 177830897 177831100 -6457562 + L1ME3A LINE L1 5956 6162 -8 207 253 265 0 chr4 177831443 177831526 -6457136 - L2 LINE L2 -4 3309 3205 510 296 5 59 chr4 177831603 177831823 -6456839 - MIR SINE MIR -10 252 45 5557 145 15 8 chr4 177831839 177832832 -6455830 + L1MA4 LINE L1 5277 6276 -24 2057 126 7 10 chr4 177832833 177833134 -6455528 - AluSx SINE Alu -12 300 1 33 0 0 0 chr4 177833159 177833192 -6455470 + AT_rich Low_complexity Low_complexity 1 33 0 1205 259 14 32 chr4 177833288 177833635 -6455027 + MER58B DNA MER1_type 1 341 0 725 188 0 15 chr4 177834190 177834323 -6454339 + AluJ SINE Alu 1 131 -171 313 322 0 0 chr4 177834354 177834444 -6454218 - L1MC4 LINE L1 -1339 6703 6614 356 261 23 0 chr4 177834462 177834550 -6454112 - L1MC4 LINE L1 -1339 6703 6614 325 255 0 43 chr4 177834560 177834654 -6454008 - L1MC4 LINE L1 -1339 6703 6614 373 250 23 0 chr4 177834658 177834746 -6453916 - L1MC4 LINE L1 -1339 6703 6614 1087 137 0 6 chr4 177834762 177834923 -6453739 + AluJ SINE Alu 130 289 -23 1140 124 0 0 chr4 177834923 177834944 -6453718 + (GGAA)n Simple_repeat Simple_repeat 1 21 -211 276 30 0 0 chr4 177834944 177834977 -6453685 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 1140 124 0 0 chr4 177834977 177835155 -6453507 + (GGAA)n Simple_repeat Simple_repeat 1 178 0 1948 139 8 43 chr4 177835395 177835791 -6452871 + L1MA7 LINE L1 5906 6287 -4 725 265 39 30 chr4 177836552 177836786 -6451876 + MIR SINE MIR 17 252 -10 473 252 16 8 chr4 177837972 177838099 -6450563 + MER63A DNA MER1_type 83 210 0 2298 98 3 7 chr4 177838375 177838682 -6449980 - AluSx SINE Alu -4 308 3 334 253 24 100 chr4 177838757 177838815 -6449847 - MER5A DNA MER1_type 0 189 128 1545 201 0 4 chr4 177838815 177839093 -6449569 + AluJb SINE Alu 15 291 -21 334 253 24 100 chr4 177839093 177839204 -6449458 - MER5A DNA MER1_type -61 128 33 1035 253 30 7 chr4 177839310 177839606 -6449056 - MER77 LTR ERV1 -7 598 296 599 244 19 13 chr4 177839704 177839860 -6448802 + L1PB4 LINE L1 5996 6152 -4 1906 142 16 10 chr4 177840052 177840361 -6448301 + AluJb SINE Alu 2 312 0 2321 162 95 5 chr4 177840963 177841019 -6447643 - MER70A LTR ERVL 0 472 422 344 22 0 22 chr4 177841019 177841065 -6447597 + (CA)n Simple_repeat Simple_repeat 2 46 0 2321 162 95 5 chr4 177841065 177841440 -6447222 - MER70A LTR ERVL -50 422 2 231 389 48 8 chr4 177842372 177842498 -6446164 - L2 LINE L2 0 3272 3142 264 170 52 39 chr4 177843016 177843169 -6445493 + (TA)n Simple_repeat Simple_repeat 2 156 0 259 215 52 29 chr4 177843083 177843255 -6445407 + (TTATA)n Simple_repeat Simple_repeat 5 180 0 * 477 215 87 40 chr4 177843724 177843873 -6444789 + MER58B DNA MER1_type 1 156 -185 1025 85 0 0 chr4 177843874 177844003 -6444659 + AluSg/x SINE Alu 169 297 -13 490 200 127 27 chr4 177844003 177844153 -6444509 + MER58B DNA MER1_type 146 310 -31 1710 179 0 3 chr4 177844201 177844498 -6444164 - AluJb SINE Alu -16 296 1 193 265 73 0 chr4 177844537 177844605 -6444057 + L3b LINE CR1 1191 1263 -320 234 91 0 0 chr4 177845054 177845087 -6443575 + (T)n Simple_repeat Simple_repeat 1 33 0 858 187 12 29 chr4 177845871 177846042 -6442620 + FRAM SINE Alu 1 160 -16 211 273 13 26 chr4 177847561 177847638 -6441024 + GA-rich Low_complexity Low_complexity 1 76 0 2027 144 3 3 chr4 177848773 177849071 -6439591 + AluSx SINE Alu 1 298 -14 230 385 48 0 chr4 177849133 177849237 -6439425 - L2 LINE L2 -8 3264 3156 187 283 0 0 chr4 177849280 177849326 -6439336 - L2 LINE L2 -2 3270 3225 337 263 25 0 chr4 177849672 177849752 -6438910 - MIR3 SINE MIR -48 160 79 4153 204 52 41 chr4 177849774 177850220 -6438442 - L1MC1 LINE L1 -13 6600 6160 2172 96 58 28 chr4 177850220 177850584 -6438078 + THE1C LTR MaLR 1 375 0 4153 204 52 41 chr4 177850584 177852307 -6436355 - L1MC1 LINE L1 -453 6160 4286 715 171 0 36 chr4 177852314 177852454 -6436208 - FLAM_C SINE Alu -3 140 6 1251 229 35 3 chr4 177852471 177852786 -6435876 - L1MC1 LINE L1 -2129 4297 3973 * 3831 176 25 20 chr4 177852784 177853570 -6435092 - L1MC1 LINE L1 -5611 815 26 1664 201 17 0 chr4 177853587 177853876 -6434786 - AluJo SINE Alu -18 294 1 249 211 0 0 chr4 177853940 177853997 -6434665 + (CA)n Simple_repeat Simple_repeat 1 57 0 1474 156 16 0 chr4 177854046 177854303 -6434359 + Tigger3(Golem) DNA MER2_type 2768 3028 -1 196 241 0 35 chr4 177854307 177854394 -6434268 + (TATATG)n Simple_repeat Simple_repeat 6 89 0 1378 296 43 39 chr4 177854394 177854862 -6433800 - L2 LINE L2 -141 3172 2710 2202 113 3 0 chr4 177854862 177855172 -6433490 - AluSx SINE Alu -1 311 1 1378 296 43 39 chr4 177855172 177855368 -6433294 - L2 LINE L2 -603 2710 2516 13420 134 28 9 chr4 177855383 177857021 -6431641 - Tigger1 DNA MER2_type -35 2383 688 213 39 0 0 chr4 177857021 177857047 -6431615 + (TTG)n Simple_repeat Simple_repeat 2 27 0 13420 134 28 9 chr4 177857047 177857730 -6430932 - Tigger1 DNA MER2_type -1730 688 19 1527 251 75 35 chr4 177857734 177857903 -6430759 - L2 LINE L2 -803 2511 2350 2148 117 0 0 chr4 177857903 177858226 -6430436 - AluSx SINE Alu 0 323 1 1527 251 75 35 chr4 177858226 177858604 -6430058 - L2 LINE L2 -964 2350 1941 940 202 61 9 chr4 177858608 177858821 -6429841 + Tigger7 DNA MER2_type 7 230 -475 263 197 0 15 chr4 177858816 177858882 -6429780 + Tigger7 DNA MER2_type 166 230 -503 * 270 184 0 22 chr4 177858859 177858943 -6429719 + Tigger7 DNA MER2_type 150 230 -321 283 155 0 17 chr4 177858946 177859004 -6429658 + Tigger7 DNA MER2_type 174 230 -2257 263 197 0 15 chr4 177858999 177859065 -6429597 + Tigger7 DNA MER2_type 166 230 -503 * 1062 188 60 5 chr4 177859060 177859278 -6429384 + Tigger7 DNA MER2_type 166 395 -338 387 194 14 0 chr4 177859288 177859360 -6429302 + Tigger7 DNA MER2_type 2506 2578 -9 912 239 74 57 chr4 177859370 177859557 -6429105 - L2 LINE L2 -1364 1950 1753 221 83 28 0 chr4 177859557 177859593 -6429069 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 912 239 74 57 chr4 177859593 177859756 -6428906 - L2 LINE L2 -1561 1753 1594 779 173 8 0 chr4 177862210 177862343 -6426319 - FLAM_C SINE Alu 0 143 10 203 301 0 12 chr4 177863750 177863833 -6424829 + (CATATA)n Simple_repeat Simple_repeat 2 83 0 2140 89 3 43 chr4 177866072 177866374 -6422288 + AluSg SINE Alu 1 290 -20 434 272 172 0 chr4 177866703 177866872 -6421790 + MIR SINE MIR 28 225 -37 462 375 0 16 chr4 177867753 177867945 -6420717 - MER5A DNA MER1_type 0 189 1 2376 98 0 0 chr4 177868800 177869107 -6419555 + AluSc SINE Alu 1 307 -2 378 307 47 0 chr4 177872912 177873039 -6415623 - L2 LINE L2 0 3272 3140 228 86 0 0 chr4 177878067 177878102 -6410560 + (CA)n Simple_repeat Simple_repeat 1 35 0 214 167 0 24 chr4 177878557 177878599 -6410063 - MIR SINE MIR -187 75 35 5509 98 21 30 chr4 177878949 177879845 -6408817 - L1MA3 LINE L1 -11 6294 5407 1148 209 66 35 chr4 177880013 177880518 -6408144 + L1M4c LINE L1 2040 2562 -3820 228 162 0 0 chr4 177880564 177880601 -6408061 - Alu SINE Alu -266 37 1 1321 128 36 9 chr4 177880601 177880820 -6407842 - AluSg/x SINE Alu -1 311 87 606 314 30 21 chr4 177880827 177881155 -6407507 + L1M4c LINE L1 2586 2916 -3466 9979 60 97 5 chr4 177881269 177882717 -6405945 - L1P LINE L1 -4469 1677 97 10051 44 2 0 chr4 177882817 177884124 -6404538 - L1P LINE L1 -3372 2774 1465 425 20 0 0 chr4 177884224 177884307 -6404355 + L1PA4 LINE L1 6088 6170 0 805 224 22 0 chr4 177884307 177884486 -6404176 + Tigger2 DNA MER2_type 2536 2718 0 271 283 0 0 chr4 177884788 177884848 -6403814 - MIR SINE MIR -202 60 1 1608 106 13 0 chr4 177887279 177887506 -6401156 + MER30 DNA MER1_type 1 230 0 202 125 0 0 chr4 177889292 177889324 -6399338 - L2 LINE L2 -2 3270 3239 2424 90 0 3 chr4 177890108 177890420 -6398242 + AluSq SINE Alu 1 311 -2 257 239 23 0 chr4 177892368 177892456 -6396206 + L1MC4 LINE L1 6614 6703 -1339 * 277 267 0 0 chr4 177892450 177892540 -6396122 + L1MC4 LINE L1 6614 6703 -1339 585 200 19 0 chr4 177892637 177892742 -6395920 - FLAM_A SINE Alu -35 107 1 207 338 14 0 chr4 177892856 177892930 -6395732 - L2 LINE L2 -19 3294 3220 1070 182 51 121 chr4 177893123 177893513 -6395149 - MLT1A1 LTR MaLR -2 363 1 242 385 30 20 chr4 177893579 177893878 -6394784 + L2 LINE L2 2424 2725 -589 187 308 15 0 chr4 177894198 177894263 -6394399 - MIR3 SINE MIR -24 184 119 225 382 53 29 chr4 177894379 177894586 -6394076 + L2 LINE L2 2077 2288 -1026 241 239 29 72 chr4 177894586 177894724 -6393938 + MER94 DNA DNA 2 133 -1 596 305 84 38 chr4 177894735 177895161 -6393501 + L2 LINE L2 2295 2740 -574 343 307 39 16 chr4 177895206 177895333 -6393329 + L2 LINE L2 3182 3311 -2 190 349 9 57 chr4 177895489 177895519 -6393143 + L2 LINE L2 2959 2989 -283 467 278 65 12 chr4 177895519 177895688 -6392974 + MER5B DNA MER1_type 1 178 0 190 349 9 57 chr4 177895688 177895763 -6392899 + L2 LINE L2 2989 3059 -213 2197 88 7 10 chr4 177896343 177896639 -6392023 - AluY SINE Alu -16 295 1 1101 127 0 0 chr4 177897181 177897338 -6391324 - AluSg/x SINE Alu 0 310 154 25 31 0 0 chr4 177898114 177898146 -6390516 + AT_rich Low_complexity Low_complexity 1 32 0 1703 137 10 48 chr4 177898152 177898469 -6390193 + AluJb SINE Alu 1 306 0 2023 161 0 0 chr4 177898691 177898996 -6389666 - AluJb SINE Alu -7 305 1 23 0 0 0 chr4 177899615 177899638 -6389024 + GC_rich Low_complexity Low_complexity 1 23 0 24 77 0 0 chr4 177901006 177901058 -6387604 + AT_rich Low_complexity Low_complexity 1 52 0 207 0 0 0 chr4 177902872 177902895 -6385767 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 214 229 0 29 chr4 177903807 177903877 -6384785 + (TA)n Simple_repeat Simple_repeat 2 69 0 22 70 0 0 chr4 177904810 177904853 -6383809 + AT_rich Low_complexity Low_complexity 1 43 0 207 204 0 0 chr4 177905049 177905093 -6383569 + GA-rich Low_complexity Low_complexity 4 47 0 30 45 0 0 chr4 177907192 177907236 -6381426 + AT_rich Low_complexity Low_complexity 1 44 0 32 0 0 0 chr4 177907712 177907744 -6380918 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 177908995 177909016 -6379646 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr4 177911006 177911026 -6377636 + (T)n Simple_repeat Simple_repeat 1 20 0 1043 150 56 0 chr4 177911353 177911533 -6377129 - L1PA16 LINE L1 -9 6157 5968 292 315 19 0 chr4 177912392 177912500 -6376162 + L2 LINE L2 3162 3271 -1 962 250 93 76 chr4 177912885 177913369 -6375293 - Charlie8 DNA MER1_type -1925 492 1 263 258 45 11 chr4 177914002 177914091 -6374571 + MIR SINE MIR 54 145 -117 276 30 0 0 chr4 177914534 177914567 -6374095 + (CA)n Simple_repeat Simple_repeat 1 33 0 804 153 0 0 chr4 177916927 177917051 -6371611 - FRAM SINE Alu -13 163 40 318 26 0 0 chr4 177919965 177920004 -6368658 + (CA)n Simple_repeat Simple_repeat 1 39 0 189 0 0 0 chr4 177920777 177920798 -6367864 + (TA)n Simple_repeat Simple_repeat 2 22 0 751 300 67 0 chr4 177921707 177921947 -6366715 + MIR SINE MIR 7 262 0 1819 112 45 70 chr4 177922124 177922438 -6366224 - AluSx SINE Alu -6 306 1 27 0 0 0 chr4 177923064 177923091 -6365571 + AT_rich Low_complexity Low_complexity 1 27 0 880 157 8 0 chr4 177923156 177923290 -6365372 - AluJb SINE Alu -177 135 1 204 111 0 0 chr4 177923407 177923443 -6365219 + (TTTTTG)n Simple_repeat Simple_repeat 3 38 0 929 128 0 0 chr4 177926105 177926238 -6362424 - FLAM_C SINE Alu 0 133 1 34 42 0 0 chr4 177926356 177926404 -6362258 + AT_rich Low_complexity Low_complexity 1 48 0 183 139 0 0 chr4 177927356 177927392 -6361270 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 372 319 150 24 chr4 177928077 177928284 -6360378 + MIR SINE MIR 5 237 -25 180 0 0 0 chr4 177929956 177929976 -6358686 + (T)n Simple_repeat Simple_repeat 1 20 0 2098 111 21 0 chr4 177930267 177930555 -6358107 + AluSq SINE Alu 1 294 -19 24 53 0 0 chr4 177931807 177931845 -6356817 + AT_rich Low_complexity Low_complexity 1 38 0 468 0 0 0 chr4 177932225 177932277 -6356385 + (TA)n Simple_repeat Simple_repeat 2 53 0 419 237 79 18 chr4 177933675 177933789 -6354873 + MIR3 SINE MIR 34 154 -54 23 54 0 0 chr4 177934427 177934464 -6354198 + AT_rich Low_complexity Low_complexity 1 37 0 35 63 0 0 chr4 177934518 177934581 -6354081 + AT_rich Low_complexity Low_complexity 1 63 0 236 179 0 0 chr4 177936407 177936446 -6352216 - L2 LINE L2 -18 3295 3257 21 0 0 0 chr4 177936545 177936566 -6352096 + AT_rich Low_complexity Low_complexity 1 21 0 1060 194 62 72 chr4 177937429 177937749 -6350913 + MER58B DNA MER1_type 8 324 -17 333 0 0 0 chr4 177940486 177940523 -6348139 + (CA)n Simple_repeat Simple_repeat 1 37 0 1706 160 0 11 chr4 177940831 177941112 -6347550 + AluJo SINE Alu 21 298 -14 2273 108 0 0 chr4 177943281 177943587 -6345075 + AluSx SINE Alu 5 310 -2 1619 93 163 8 chr4 177944636 177944894 -6343768 + AluSg SINE Alu 1 298 -2 2052 132 10 6 chr4 177945175 177945486 -6343176 - AluJb SINE Alu 0 312 1 2394 94 0 0 chr4 177946288 177946587 -6342075 - AluSx SINE Alu -13 299 1 2162 91 4 0 chr4 177947762 177948036 -6340626 - AluSp SINE Alu -7 306 32 1175 186 171 18 chr4 177949319 177949647 -6339015 - MER58D DNA MER1_type 0 386 9 2268 102 3 0 chr4 177949900 177950205 -6338457 - AluSq SINE Alu -7 306 1 211 200 43 0 chr4 177951383 177951453 -6337209 + (TTATA)n Simple_repeat Simple_repeat 1 73 0 23 0 0 0 chr4 177952686 177952709 -6335953 + AT_rich Low_complexity Low_complexity 1 23 0 438 316 40 6 chr4 177952751 177952928 -6335734 + MIR SINE MIR 74 256 -6 21 0 0 0 chr4 177953449 177953470 -6335192 + AT_rich Low_complexity Low_complexity 1 21 0 2382 64 3 6 chr4 177954721 177955033 -6333629 - AluY SINE Alu 0 311 1 687 168 0 8 chr4 177955435 177955600 -6333062 - FLAM_C SINE Alu 0 165 2 21 0 0 0 chr4 177955600 177955621 -6333041 + AT_rich Low_complexity Low_complexity 1 21 0 2376 100 7 0 chr4 177957942 177958251 -6330411 - AluSx SINE Alu -1 311 1 1097 247 21 4 chr4 177958428 177958671 -6329991 - MIR SINE MIR 0 262 16 310 332 278 5 chr4 177958939 177959144 -6329518 - MIR SINE MIR 0 262 2 403 304 83 6 chr4 177959331 177959499 -6329163 - MIR SINE MIR -13 249 69 324 208 13 0 chr4 177959546 177959623 -6329039 - MER116 DNA Mariner 0 80 3 2189 99 10 0 chr4 177959873 177960176 -6328486 + AluSx SINE Alu 1 306 -6 1571 173 7 11 chr4 177960339 177960623 -6328039 + AluJo SINE Alu 30 312 0 2493 80 0 0 chr4 177961025 177961337 -6327325 + AluSx SINE Alu 1 312 0 2296 102 0 9 chr4 177962067 177962382 -6326280 + AluSx SINE Alu 1 312 0 201 100 0 50 chr4 177965062 177965102 -6323560 + (GAAA)n Simple_repeat Simple_repeat 3 40 0 305 252 61 43 chr4 177965523 177965638 -6323024 - MIR SINE MIR -44 218 102 189 0 0 0 chr4 177965764 177965785 -6322877 + (A)n Simple_repeat Simple_repeat 1 21 0 359 332 81 24 chr4 177966675 177966721 -6321941 + MIR SINE MIR 2 44 -218 2211 95 10 3 chr4 177966721 177967016 -6321646 - AluSg SINE Alu -13 297 1 359 332 81 24 chr4 177967016 177967216 -6321446 + MIR SINE MIR 44 262 0 199 282 42 56 chr4 177968737 177968808 -6319854 - MIR3 SINE MIR -52 156 87 187 279 0 66 chr4 177969896 177969957 -6318705 + MIR SINE MIR 87 143 -65 1162 229 44 22 chr4 177969972 177970334 -6318328 + L1MA9 LINE L1 5905 6274 -38 207 200 0 0 chr4 177970343 177970378 -6318284 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 328 279 47 0 chr4 177970378 177970464 -6318198 - L1MC4 LINE L1 -1339 6703 6614 * 337 303 0 0 chr4 177970389 177970478 -6318184 + L1MC4 LINE L1 6615 6703 -1339 306 194 0 0 chr4 177971686 177971748 -6316914 + (TA)n Simple_repeat Simple_repeat 1 62 0 403 281 26 9 chr4 177972547 177972661 -6316001 - L2 LINE L2 -16 3297 3182 405 0 0 0 chr4 177972893 177972938 -6315724 + (TA)n Simple_repeat Simple_repeat 1 45 0 1632 95 115 0 chr4 177974531 177974784 -6313878 + AluSc SINE Alu 8 289 -20 1797 160 7 0 chr4 178025350 178025644 -6263018 + AluJo SINE Alu 1 296 -16 2198 126 0 0 chr4 178026066 178026368 -6262294 + AluSx SINE Alu 4 305 -7 299 336 63 15 chr4 178026922 178027171 -6261491 - MIR SINE MIR -6 256 1 2130 113 0 3 chr4 178027352 178027634 -6261028 + AluSq SINE Alu 1 281 -32 27 0 0 0 chr4 178031061 178031088 -6257574 + AT_rich Low_complexity Low_complexity 1 27 0 796 199 54 38 chr4 178031236 178031422 -6257240 - MER5A DNA MER1_type 0 189 1 404 297 97 26 chr4 178031868 178032023 -6256639 - MIR SINE MIR -18 190 25 250 235 30 30 chr4 178032177 178032309 -6256353 + (TA)n Simple_repeat Simple_repeat 1 132 0 1755 164 10 3 chr4 178033482 178033774 -6254888 - AluJo SINE Alu -18 294 1 4403 161 37 7 chr4 178033786 178034543 -6254119 - L1MA4 LINE L1 -3 6297 5518 2292 100 0 3 chr4 178035039 178035340 -6253322 - AluSc SINE Alu -9 300 1 206 297 0 16 chr4 178035364 178035428 -6253234 - L2 LINE L2 0 3313 3251 250 305 141 50 chr4 178035445 178035884 -6252778 + MARNA DNA Mariner 14 492 -94 4372 76 7 23 chr4 178036441 178036883 -6251779 + MER41A LTR ERV1 1 434 -120 2137 43 31 0 chr4 178036883 178037139 -6251523 - AluY SINE Alu -7 304 41 4372 76 7 23 chr4 178037139 178037259 -6251403 + MER41A LTR ERV1 434 554 0 3703 149 153 15 chr4 178037359 178038103 -6250559 + MER41A-int LTR ERV1 5 851 -5095 * 13240 154 90 32 chr4 178038098 178040824 -6247838 + MER41A-int LTR ERV1 1052 4919 -2529 12597 103 28 15 chr4 178040808 178042637 -6246025 + MER41A-int LTR ERV1 4092 5945 -1 * 4222 106 13 2 chr4 178042638 178043186 -6245476 + MER41A LTR ERV1 1 554 0 182 348 0 22 chr4 178043816 178043862 -6244800 - L3b LINE CR1 -22 1561 1517 5297 150 19 27 chr4 178043899 178044810 -6243852 - MER4D LTR ERV1 0 903 1 227 261 46 0 chr4 178045881 178045946 -6242716 - MIR SINE MIR -75 187 120 388 304 40 30 chr4 178046861 178047062 -6241600 - L2 LINE L2 -61 3252 3050 346 293 215 24 chr4 178047314 178047519 -6241143 - MIR SINE MIR -3 259 16 1983 140 0 3 chr4 178049003 178049289 -6239373 - AluSx SINE Alu -26 286 2 180 306 56 28 chr4 178049495 178049567 -6239095 + L2 LINE L2 3156 3229 -43 469 327 59 88 chr4 178049624 178049819 -6238843 - L2 LINE L2 -3 3310 3111 1652 166 7 30 chr4 178049819 178050114 -6238548 + AluJo SINE Alu 1 288 -24 469 327 59 88 chr4 178050114 178050374 -6238288 - L2 LINE L2 -202 3111 2868 2422 96 0 0 chr4 178052249 178052562 -6236100 + AluSp SINE Alu 1 313 0 354 223 96 0 chr4 178052568 178052662 -6236000 + MIR SINE MIR 75 177 -85 195 186 0 0 chr4 178053425 178053468 -6235194 + (TA)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr4 178053736 178053757 -6234905 + AT_rich Low_complexity Low_complexity 1 21 0 777 194 0 8 chr4 178055694 178055818 -6232844 - FLAM_A SINE Alu -10 123 1 203 0 0 36 chr4 178055891 178055919 -6232743 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1860 151 7 0 chr4 178055921 178056200 -6232462 - AluSx SINE Alu -31 281 1 2247 60 42 3 chr4 178057404 178057687 -6230975 + AluY SINE Alu 1 294 -17 196 296 46 74 chr4 178057687 178057795 -6230867 + L2 LINE L2 3168 3272 0 6973 235 68 30 chr4 178057899 178059819 -6228843 - L1MEc LINE L1 -3974 2422 469 949 191 81 34 chr4 178059819 178060028 -6228634 + MER20 DNA MER1_type 1 219 0 6973 235 68 30 chr4 178060028 178060478 -6228184 - L1MEc LINE L1 -5927 469 38 1456 171 30 63 chr4 178060685 178060984 -6227678 - AluJb SINE Alu -23 289 1 26 74 0 0 chr4 178061089 178061143 -6227519 + AT_rich Low_complexity Low_complexity 1 54 0 2002 158 0 0 chr4 178062140 178062444 -6226218 - AluJo SINE Alu -8 304 1 2115 119 0 3 chr4 178063207 178063501 -6225161 + AluSx SINE Alu 1 293 -19 433 171 0 13 chr4 178063534 178063607 -6225055 - MER58 DNA MER1_type 0 2420 2349 1630 207 40 65 chr4 178063607 178064081 -6224581 - MLT1C LTR MaLR 0 467 6 699 238 41 0 chr4 178064082 178064229 -6224433 - MER58A DNA MER1_type 0 161 9 409 213 111 19 chr4 178064592 178064700 -6223962 + L2 LINE L2 3180 3297 -16 2161 113 0 0 chr4 178064720 178065032 -6223630 + AluSx SINE Alu 1 312 0 2157 124 0 0 chr4 178065040 178065347 -6223315 + AluY SINE Alu 1 307 -4 233 0 62 0 chr4 178066086 178066118 -6222544 + (CAGAGA)n Simple_repeat Simple_repeat 1 34 0 24 0 0 0 chr4 178066790 178066814 -6221848 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr4 178068528 178068565 -6220097 + AT_rich Low_complexity Low_complexity 1 37 0 26 0 0 0 chr4 178069118 178069144 -6219518 + AT_rich Low_complexity Low_complexity 1 26 0 1595 174 10 34 chr4 178069926 178070219 -6218443 - AluJo SINE Alu -16 286 1 2384 98 0 0 chr4 178071586 178071892 -6216770 - AluSx SINE Alu -6 306 1 679 305 47 65 chr4 178075953 178076155 -6212507 + L2 LINE L2 2590 2794 -519 1805 181 3 3 chr4 178076155 178076458 -6212204 + AluJo SINE Alu 1 303 -9 679 305 47 65 chr4 178076458 178076807 -6211855 + L2 LINE L2 2794 3126 -187 2209 97 0 13 chr4 178076814 178077125 -6211537 - AluY SINE Alu -3 308 2 2371 87 6 0 chr4 178077134 178077445 -6211217 - AluSp SINE Alu 0 313 1 696 175 56 0 chr4 178077446 178077572 -6211090 - AluJo SINE Alu -178 134 2 495 286 85 21 chr4 178077586 178077775 -6210887 + L2 LINE L2 3113 3313 0 279 333 54 27 chr4 178077844 178077991 -6210671 - MIR SINE MIR -101 161 11 1718 161 7 17 chr4 178078153 178078445 -6210217 + AluJo SINE Alu 1 289 -23 1763 48 0 0 chr4 178079851 178080060 -6208602 + AluY SINE Alu 97 305 -6 311 264 96 16 chr4 178080338 178080463 -6208199 + L1M LINE L1 5256 5390 -774 180 297 135 18 chr4 178081440 178081551 -6207111 - MIR3 SINE MIR -12 196 73 2785 197 119 13 chr4 178081664 178082661 -6206001 + L1ME2 LINE L1 5060 6164 0 398 344 37 41 chr4 178084232 178084450 -6204212 + HAL1b LINE L1 305 521 -827 1080 238 68 41 chr4 178084452 178084934 -6203728 - MER39 LTR ERV1 0 707 1 228 209 0 30 chr4 178085323 178085390 -6203272 + A-rich Low_complexity Low_complexity 5 69 0 2376 81 0 3 chr4 178085577 178085886 -6202776 + AluSx SINE Alu 1 308 -4 746 310 57 70 chr4 178086245 178087051 -6201611 + L1MB8 LINE L1 3519 4314 -1832 544 224 95 125 chr4 178087067 178087299 -6201363 + MIR SINE MIR 5 229 -33 576 253 80 81 chr4 178087330 178088019 -6200643 + L1MB8 LINE L1 4370 5057 -1089 255 254 164 15 chr4 178088062 178088196 -6200466 - MLT1L LTR MaLR -54 561 408 1971 138 3 3 chr4 178089123 178089421 -6199241 + AluSx SINE Alu 1 298 -14 504 284 50 56 chr4 178089482 178089785 -6198877 + L1 LINE L1 2255 2555 -3591 24 67 0 0 chr4 178092329 178092374 -6196288 + AT_rich Low_complexity Low_complexity 1 45 0 348 281 80 38 chr4 178092517 178092780 -6195882 - L1MC4a LINE L1 -1868 5940 5667 3333 170 43 19 chr4 178093082 178093757 -6194905 + L1MB8 LINE L1 5482 6172 -6 225 0 0 0 chr4 178094726 178094751 -6193911 + (CAGCC)n Simple_repeat Simple_repeat 2 26 0 432 55 0 0 chr4 178097159 178097214 -6191448 + (CATA)n Simple_repeat Simple_repeat 4 58 0 222 292 0 15 chr4 178098112 178098177 -6190485 + CT-rich Low_complexity Low_complexity 3 66 0 30 27 0 0 chr4 178099810 178099847 -6188815 + AT_rich Low_complexity Low_complexity 1 37 0 2182 75 11 4 chr4 178101785 178102088 -6186574 - AluSc SINE Alu 0 305 1 545 257 25 70 chr4 178102832 178103073 -6185589 + MIR SINE MIR 33 262 0 2281 84 10 0 chr4 178104791 178105087 -6183575 + AluSq SINE Alu 1 299 -14 237 395 32 8 chr4 178106006 178106130 -6182532 - L2 LINE L2 -10 3262 3136 194 0 39 0 chr4 178106433 178106459 -6182203 + (TA)n Simple_repeat Simple_repeat 1 27 0 631 135 9 36 chr4 178106767 178106878 -6181784 + FLAM_A SINE Alu 17 124 -18 31 0 0 0 chr4 178107218 178107249 -6181413 + AT_rich Low_complexity Low_complexity 1 31 0 42344 34 2 2 chr4 178107249 178113405 -6175257 - L1PA3 LINE L1 0 6155 3 540 243 0 0 chr4 178113808 178113977 -6174685 + (TA)n Simple_repeat Simple_repeat 1 169 0 2498 58 0 10 chr4 178114939 178115250 -6173412 - AluY SINE Alu -3 308 1 929 265 83 18 chr4 178115325 178115770 -6172892 - L1ME LINE L1 -334 5787 5314 1761 166 71 0 chr4 178116261 178116586 -6172076 - MER7A DNA MER2_type 0 346 1 28 61 0 0 chr4 178116864 178116913 -6171749 + AT_rich Low_complexity Low_complexity 1 49 0 559 273 52 23 chr4 178119754 178119926 -6168736 - MIR SINE MIR -59 203 27 2087 134 13 3 chr4 178120130 178120437 -6168225 + AluSx SINE Alu 1 310 -2 339 366 0 8 chr4 178120445 178120568 -6168094 + MIR3 SINE MIR 11 132 -76 288 0 0 0 chr4 178121761 178121793 -6166869 + (CA)n Simple_repeat Simple_repeat 1 32 0 1737 151 20 37 chr4 178123270 178123568 -6165094 - AluJb SINE Alu -19 293 1 2368 164 34 5 chr4 178123836 178124250 -6164412 - MSTB LTR MaLR 0 426 1 189 343 47 87 chr4 178125396 178125696 -6162966 + L2 LINE L2 2817 3104 -168 2211 120 0 7 chr4 178126060 178126369 -6162293 - AluSx SINE Alu -5 307 1 345 286 0 9 chr4 178127523 178127628 -6161034 - MER94 DNA DNA -25 109 6 2158 113 0 0 chr4 178127827 178128139 -6160523 - AluSx SINE Alu 0 312 1 211 262 0 0 chr4 178128703 178128745 -6159917 - MIR SINE MIR -115 147 106 640 270 65 110 chr4 178128757 178129363 -6159299 - L2 LINE L2 -20 3293 2709 253 304 25 13 chr4 178129358 178129437 -6159225 - MIR SINE MIR -161 101 22 * 1922 84 81 11 chr4 178129621 178129894 -6158768 + AluSg SINE Alu 1 292 -18 433 325 36 12 chr4 178130236 178130402 -6158260 + MIR SINE MIR 8 177 -85 189 0 0 0 chr4 178130479 178130500 -6158162 + (CAA)n Simple_repeat Simple_repeat 1 21 0 2348 80 0 13 chr4 178130516 178130829 -6157833 + AluSq SINE Alu 5 313 0 375 317 0 0 chr4 178130926 178131027 -6157635 + L2 LINE L2 3200 3300 -13 318 50 0 0 chr4 178132062 178132102 -6156560 + (TCCCC)n Simple_repeat Simple_repeat 3 42 0 2103 78 3 21 chr4 178132102 178132385 -6156277 - AluSp SINE Alu -35 278 1 1883 204 39 28 chr4 178133496 178133957 -6154705 - MER31B LTR ERV1 0 466 1 1037 193 4 25 chr4 178133991 178134230 -6154432 - L1PA16 LINE L1 -4 6162 5929 839 200 0 0 chr4 178134230 178134405 -6154257 + L1 LINE L1 4691 4865 -1281 2252 113 0 0 chr4 178135788 178136090 -6152572 - AluSx SINE Alu -10 302 1 21 36 0 0 chr4 178136387 178136415 -6152247 + AT_rich Low_complexity Low_complexity 1 28 0 4625 160 110 84 chr4 178136904 178138418 -6150244 + pTR5 LTR ERV1 743 2295 -143 21 36 0 0 chr4 178138877 178138905 -6149757 + AT_rich Low_complexity Low_complexity 1 28 0 228 365 35 29 chr4 178138912 178139082 -6149580 - MIR SINE MIR -12 250 80 2550 31 0 0 chr4 178140217 178140510 -6148152 - AluY SINE Alu -18 293 1 363 361 8 15 chr4 178141784 178141917 -6146745 - MIR3 SINE MIR -63 145 14 30 45 0 0 chr4 178146197 178146241 -6142421 + AT_rich Low_complexity Low_complexity 1 44 0 295 123 18 0 chr4 178146627 178146684 -6141978 - L1PA16 LINE L1 -21 6145 6088 447 267 213 10 chr4 178146841 178147043 -6141619 + MIR SINE MIR 20 262 0 2227 117 0 0 chr4 178147206 178147504 -6141158 + AluSx SINE Alu 1 298 -14 1398 88 0 0 chr4 178147775 178147956 -6140706 + AluSc SINE Alu 129 309 0 271 307 21 37 chr4 178148088 178148216 -6140446 - MIR SINE MIR -62 146 23 699 163 151 12 chr4 178148220 178148386 -6140276 - MER5A DNA MER1_type 0 189 1 216 111 0 0 chr4 178149438 178149474 -6139188 + (CAGTT)n Simple_repeat Simple_repeat 2 37 0 1584 171 49 11 chr4 178154262 178154548 -6134114 - AluJo SINE Alu -15 297 1 182 230 142 97 chr4 178154662 178154775 -6133887 + MIR SINE MIR 103 220 -42 366 314 20 0 chr4 178156088 178156190 -6132472 - L2 LINE L2 0 3272 3169 2128 127 10 0 chr4 178156552 178156859 -6131803 + AluSx SINE Alu 3 312 0 276 30 0 0 chr4 178158110 178158143 -6130519 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 1748 161 16 22 chr4 178160342 178160653 -6128009 - AluJb SINE Alu -3 309 1 605 266 12 23 chr4 178161989 178162162 -6126500 - MER5A DNA MER1_type 0 189 19 32 0 0 0 chr4 178162945 178162977 -6125685 + AT_rich Low_complexity Low_complexity 1 32 0 2272 105 0 7 chr4 178163109 178163414 -6125248 + AluSc SINE Alu 1 303 -6 305 306 41 37 chr4 178163483 178163751 -6124911 + L1MEd LINE L1 939 1207 -4912 2064 133 3 3 chr4 178163860 178164153 -6124509 + AluSx SINE Alu 1 293 -19 245 219 31 0 chr4 178164231 178164295 -6124367 + HAL1 LINE L1 1544 1609 -898 183 364 30 0 chr4 178164379 178164445 -6124217 - L2 LINE L2 -90 3182 3115 183 184 0 0 chr4 178165326 178165364 -6123298 + (CA)n Simple_repeat Simple_repeat 1 38 0 21 0 0 0 chr4 178166506 178166527 -6122135 + AT_rich Low_complexity Low_complexity 1 21 0 2413 61 0 10 chr4 178167491 178167802 -6120860 - AluY SINE Alu -3 308 1 1671 173 3 7 chr4 178169083 178169389 -6119273 - AluJb SINE Alu -7 305 1 6591 47 2 0 chr4 178169746 178170549 -6118113 + L1PA5 LINE L1 5342 6146 -8 193 229 16 49 chr4 178170562 178170623 -6118039 - MIR SINE MIR -102 160 102 495 243 162 27 chr4 178173321 178173506 -6115156 - MIR SINE MIR -37 225 16 329 181 0 173 chr4 178173615 178173742 -6114920 - HAL1 LINE L1 -2336 171 67 2211 119 0 0 chr4 178176253 178176556 -6112106 + AluSg SINE Alu 1 303 -7 22 0 0 0 chr4 178179321 178179343 -6109319 + AT_rich Low_complexity Low_complexity 1 22 0 495 289 69 19 chr4 178180551 178180781 -6107881 - MIR SINE MIR -18 244 6 2168 117 0 0 chr4 178180989 178181289 -6107373 + AluY SINE Alu 1 300 -11 261 314 69 88 chr4 178181407 178181453 -6107209 - L2 LINE L2 -582 2732 2687 2138 110 4 0 chr4 178181453 178181789 -6106873 + AluSx SINE Alu 1 337 0 261 314 69 88 chr4 178181789 178181937 -6106725 - L2 LINE L2 -627 2687 2538 2268 93 7 0 chr4 178181937 178182237 -6106425 + AluSc SINE Alu 1 302 -7 261 314 69 88 chr4 178182237 178182461 -6106201 - L2 LINE L2 -776 2538 2320 2118 103 26 22 chr4 178182517 178182829 -6105833 + AluSq SINE Alu 1 313 0 281 270 123 43 chr4 178183297 178183460 -6105202 - L2 LINE L2 -210 3062 2887 917 98 16 0 chr4 178183587 178183709 -6104953 - AluSq/x SINE Alu -189 124 1 329 286 176 61 chr4 178183711 178184120 -6104542 - L2 LINE L2 -586 2728 2273 1533 192 10 10 chr4 178184561 178184852 -6103810 + AluJo SINE Alu 6 296 -16 1967 123 0 0 chr4 178185103 178185371 -6103291 + AluSq SINE Alu 1 268 -45 180 77 0 0 chr4 178186315 178186341 -6102321 + (CCTG)n Simple_repeat Simple_repeat 2 27 0 2345 81 0 32 chr4 178187458 178187767 -6100895 + AluSq SINE Alu 1 299 -14 1670 145 7 31 chr4 178188089 178188237 -6100425 + AluJb SINE Alu 1 151 -154 2134 121 3 7 chr4 178188237 178188534 -6100128 + AluSx SINE Alu 1 296 -16 1670 145 7 31 chr4 178188534 178188697 -6099965 + AluJb SINE Alu 151 305 0 301 314 59 0 chr4 178188788 178188890 -6099772 - MIR SINE MIR -68 140 33 274 253 11 35 chr4 178190209 178190296 -6098366 + MIR SINE MIR 167 251 -11 217 337 53 56 chr4 178190337 178190750 -6097912 + L2 LINE L2 1790 2201 -1113 2404 64 7 7 chr4 178190837 178191135 -6097527 - AluSg SINE Alu -12 298 1 681 330 22 38 chr4 178191313 178191550 -6097112 + L3b LINE CR1 1122 1354 -229 1098 78 7 0 chr4 178191550 178191691 -6096971 - L1PA14 LINE L1 0 6161 6020 681 330 22 38 chr4 178191691 178191771 -6096891 + L3b LINE CR1 1354 1434 -149 195 162 0 0 chr4 178192164 178192201 -6096461 + (TCCA)n Simple_repeat Simple_repeat 4 40 0 2074 104 0 84 chr4 178192214 178192549 -6096113 - AluSx SINE Alu -5 307 1 366 319 57 82 chr4 178192551 178192833 -6095829 - L2 LINE L2 -12 3260 2986 22 35 0 0 chr4 178192973 178193002 -6095660 + AT_rich Low_complexity Low_complexity 1 29 0 2343 94 0 3 chr4 178193307 178193615 -6095047 - AluY SINE Alu -4 307 1 2142 122 0 7 chr4 178193637 178193933 -6094729 - AluSx SINE Alu -18 294 1 484 253 35 36 chr4 178194350 178194531 -6094131 - MIR SINE MIR -59 149 14 488 342 80 32 chr4 178195491 178195804 -6092858 - L2 LINE L2 -49 3223 2896 415 323 56 26 chr4 178195837 178196032 -6092630 - MIR SINE MIR -14 248 48 223 238 0 0 chr4 178196273 178196315 -6092347 + polypyrimidine Low_complexity Low_complexity 6 47 0 30 0 0 0 chr4 178197940 178197970 -6090692 + AT_rich Low_complexity Low_complexity 1 30 0 2283 108 0 3 chr4 178198069 178198376 -6090286 - AluSx SINE Alu -1 311 6 2027 100 3 41 chr4 178198764 178199055 -6089607 - AluSp SINE Alu -13 300 21 237 322 113 9 chr4 178199842 178199957 -6088705 + MIR SINE MIR 101 227 -35 21 57 0 0 chr4 178200960 178200995 -6087667 + AT_rich Low_complexity Low_complexity 1 35 0 348 311 45 8 chr4 178200998 178201130 -6087532 + L2 LINE L2 3136 3272 0 2101 122 0 37 chr4 178201508 178201849 -6086813 + AluSx SINE Alu 4 332 0 202 240 40 0 chr4 178202436 178202486 -6086176 - L3 LINE CR1 -5 1572 1521 2096 113 17 10 chr4 178202745 178203046 -6085616 - AluSx SINE Alu -9 303 1 247 200 13 13 chr4 178203083 178203158 -6085504 + GA-rich Low_complexity Low_complexity 2 76 0 464 299 80 30 chr4 178206419 178206620 -6082042 + MIR SINE MIR 48 258 -4 2213 110 0 0 chr4 178207052 178207344 -6081318 - AluY SINE Alu -19 292 1 22 0 0 0 chr4 178207347 178207369 -6081293 + AT_rich Low_complexity Low_complexity 1 22 0 198 191 0 0 chr4 178207794 178207836 -6080826 + CT-rich Low_complexity Low_complexity 2 43 0 928 175 29 0 chr4 178208843 178209014 -6079648 - FRAM SINE Alu 0 176 1 349 284 88 20 chr4 178210766 178210914 -6077748 - MER91A DNA MER1_type -2 194 37 1774 132 13 85 chr4 178210981 178211299 -6077363 - AluJo SINE Alu -17 295 1 507 320 8 77 chr4 178212523 178212782 -6075880 - MIR SINE MIR -1 261 21 900 154 0 22 chr4 178212885 178213021 -6075641 - FLAM_A SINE Alu 0 133 1 642 275 169 22 chr4 178213023 178213336 -6075326 - MLT1K LTR MaLR -151 437 79 2320 95 0 10 chr4 178213364 178213670 -6074992 - AluSx SINE Alu -9 303 1 737 270 78 4 chr4 178214136 178214366 -6074296 + MIR SINE MIR 3 249 -13 197 299 178 29 chr4 178214690 178214864 -6073798 + MIR SINE MIR 50 249 -13 1008 184 0 6 chr4 178214871 178215050 -6073612 + AluJb SINE Alu 133 310 -2 207 220 60 0 chr4 178216155 178216205 -6072457 + (CATATA)n Simple_repeat Simple_repeat 5 57 0 272 326 82 11 chr4 178216379 178216563 -6072099 + L2 LINE L2 2385 2581 -733 263 175 79 0 chr4 178216778 178216841 -6071821 + LTR66 LTR ERVL 372 439 -171 297 0 0 0 chr4 178216843 178216876 -6071786 + (CA)n Simple_repeat Simple_repeat 2 34 0 822 164 16 0 chr4 178216895 178217017 -6071645 - AluJb SINE Alu -187 125 2 24 32 0 0 chr4 178218413 178218444 -6070218 + AT_rich Low_complexity Low_complexity 1 31 0 2086 96 0 51 chr4 178218792 178219104 -6069558 - AluSq SINE Alu -17 296 1 348 321 134 19 chr4 178219152 178219361 -6069301 + MIR SINE MIR 13 245 -17 22 0 0 0 chr4 178219604 178219626 -6069036 + AT_rich Low_complexity Low_complexity 1 22 0 860 181 0 0 chr4 178220625 178220758 -6067904 - FLAM_C SINE Alu 0 133 1 219 226 57 28 chr4 178222982 178223088 -6065574 + (CGGGG)n Simple_repeat Simple_repeat 3 111 0 180 0 0 0 chr4 178223282 178223302 -6065360 + (CGG)n Simple_repeat Simple_repeat 3 22 0 312 91 0 0 chr4 178223377 178223421 -6065241 + (CGG)n Simple_repeat Simple_repeat 3 46 0 21 0 0 0 chr4 178225236 178225257 -6063405 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 178226029 178226059 -6062603 + AT_rich Low_complexity Low_complexity 1 30 0 237 132 0 0 chr4 178227095 178227133 -6061529 + (TA)n Simple_repeat Simple_repeat 1 38 0 23 54 0 0 chr4 178227669 178227706 -6060956 + AT_rich Low_complexity Low_complexity 1 37 0 2351 78 3 3 chr4 178229631 178229938 -6058724 - AluSx SINE Alu -5 307 1 213 404 33 26 chr4 178230024 178230175 -6058487 + L2 LINE L2 3117 3268 -4 2248 103 0 6 chr4 178230977 178231288 -6057374 + AluSx SINE Alu 1 309 -3 482 263 51 19 chr4 178231423 178231579 -6057083 - MIR SINE MIR 0 262 102 1343 188 23 36 chr4 178231635 178231938 -6056724 - AluJo SINE Alu -13 299 1 255 256 103 0 chr4 178232544 178232622 -6056040 + MIR3 SINE MIR 75 160 -48 581 286 103 25 chr4 178233065 178233464 -6055198 + MARNA DNA Mariner 137 566 -20 23 0 0 0 chr4 178234414 178234437 -6054225 + AT_rich Low_complexity Low_complexity 1 23 0 459 214 80 18 chr4 178235475 178235587 -6053075 + L2 LINE L2 3195 3313 0 278 303 85 20 chr4 178235586 178235699 -6052963 - MIR SINE MIR -85 123 1 * 1555 152 52 21 chr4 178235837 178236127 -6052535 - AluJo SINE Alu -13 299 1 1790 114 4 0 chr4 178236418 178236672 -6051990 + AluSx SINE Alu 45 299 -13 615 230 97 24 chr4 178236698 178236863 -6051799 + MER8 DNA MER2_type 7 183 -56 2147 119 3 0 chr4 178237001 178237303 -6051359 + AluSx SINE Alu 1 303 -9 1678 177 57 15 chr4 178238860 178239193 -6049469 - MER7A DNA MER2_type 0 346 2 225 0 0 0 chr4 178239194 178239219 -6049443 + (TG)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chr4 178239254 178239282 -6049380 + AT_rich Low_complexity Low_complexity 1 28 0 766 193 28 0 chr4 178240116 178240292 -6048370 - Charlie2 DNA MER1_type -1 2861 2681 1200 170 13 35 chr4 178240294 178240524 -6048138 - AluJo SINE Alu -21 291 67 974 104 78 7 chr4 178241052 178241206 -6047456 - AluSg/x SINE Alu -14 296 132 2314 78 7 0 chr4 178241206 178241500 -6047162 - AluSp SINE Alu -17 296 1 2260 92 0 0 chr4 178241843 178242135 -6046527 - AluSx SINE Alu -20 292 1 1277 206 47 21 chr4 178242805 178243144 -6045518 + MLT1A1 LTR MaLR 5 352 -13 228 222 0 37 chr4 178243247 178243301 -6045361 - L2 LINE L2 -4 3268 3217 700 254 99 20 chr4 178243751 178244003 -6044659 - MLT1C LTR MaLR -7 460 189 1300 122 5 15 chr4 178244004 178244200 -6044462 - AluJo SINE Alu -106 206 13 528 208 137 0 chr4 178244215 178244383 -6044279 - MLT1C LTR MaLR -276 191 1 665 147 9 0 chr4 178245685 178245801 -6042861 + FLAM_C SINE Alu 1 117 -16 2288 61 0 0 chr4 178246063 178246342 -6042320 + AluY SINE Alu 1 279 -32 192 40 0 0 chr4 178246342 178246367 -6042295 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 1514 134 103 0 chr4 178246374 178246635 -6042027 + AluJo SINE Alu 1 288 -24 282 131 0 33 chr4 178246636 178246697 -6041965 - Charlie2 DNA MER1_type -572 2290 2232 356 287 50 0 chr4 178246818 178246919 -6041743 - Charlie2 DNA MER1_type -2756 106 1 231 310 147 49 chr4 178247069 178247253 -6041409 - MER20 DNA MER1_type -17 202 1 315 310 80 31 chr4 178247327 178247553 -6041109 - L1M4 LINE L1 -3644 2502 2266 27 29 0 0 chr4 178247948 178247982 -6040680 + AT_rich Low_complexity Low_complexity 1 34 0 260 246 14 0 chr4 178249205 178249274 -6039388 + (TA)n Simple_repeat Simple_repeat 2 71 0 25 51 0 0 chr4 178250443 178250482 -6038180 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr4 178250800 178250822 -6037840 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 178251283 178251311 -6037351 + AT_rich Low_complexity Low_complexity 1 28 0 33 0 0 0 chr4 178252021 178252054 -6036608 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr4 178252067 178252088 -6036574 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 178253240 178253261 -6035401 + AT_rich Low_complexity Low_complexity 1 21 0 1841 135 3 7 chr4 178254183 178254471 -6034191 + AluSx SINE Alu 1 287 -25 183 42 0 0 chr4 178254484 178254508 -6034154 + (CAATA)n Simple_repeat Simple_repeat 1 24 0 1833 152 141 24 chr4 178256314 178256696 -6031966 - MSTA LTR MaLR 0 428 2 181 315 33 65 chr4 178256696 178256788 -6031874 + L2 LINE L2 3152 3240 -32 980 235 36 9 chr4 178256818 178257039 -6031623 - MIR SINE MIR -33 229 3 24 0 0 0 chr4 178257298 178257322 -6031340 + AT_rich Low_complexity Low_complexity 1 24 0 347 329 42 85 chr4 178258393 178258746 -6029916 - L2 LINE L2 -20 3252 2915 324 91 0 0 chr4 178260237 178260281 -6028381 - tRNA-Phe-TTC tRNA tRNA -32 44 1 186 254 111 16 chr4 178260478 178260541 -6028121 + L2 LINE L2 3244 3312 -1 382 163 48 27 chr4 178262417 178262564 -6026098 + CT-rich Low_complexity Low_complexity 4 153 0 21 0 0 0 chr4 178264180 178264201 -6024461 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr4 178266621 178266658 -6022004 + AT_rich Low_complexity Low_complexity 1 37 0 1623 142 93 3 chr4 178266937 178267248 -6021414 + MER44D DNA MER2_type 1 609 0 2145 82 10 7 chr4 178269731 178270022 -6018640 - AluSc SINE Alu -17 292 1 339 25 0 0 chr4 178270515 178270555 -6018107 + (TA)n Simple_repeat Simple_repeat 2 41 0 2269 91 0 3 chr4 178271244 178271541 -6017121 + AluSq SINE Alu 1 296 -17 203 316 79 43 chr4 178271978 178272117 -6016545 - MIR SINE MIR -72 190 47 329 279 196 15 chr4 178272966 178273170 -6015492 + L1ME LINE L1 5256 5496 -2312 231 222 157 19 chr4 178273358 178273466 -6015196 + L1ME LINE L1 5653 5775 -395 475 274 144 5 chr4 178274180 178274395 -6014267 - HAL1 LINE L1 -10 2497 2253 294 242 75 42 chr4 178274596 178274716 -6013946 - HAL1 LINE L1 -834 1673 1550 1399 273 67 44 chr4 178274750 178275574 -6013088 - HAL1 LINE L1 -929 1578 736 234 0 0 0 chr4 178275583 178275609 -6013053 + (T)n Simple_repeat Simple_repeat 1 26 0 295 295 11 21 chr4 178276048 178276143 -6012519 + L2 LINE L2 2851 2944 -370 244 292 115 73 chr4 178276255 178276447 -6012215 - MLT1I LTR MaLR -109 300 101 894 273 30 54 chr4 178276495 178276829 -6011833 + L2 LINE L2 2973 3298 -15 225 243 135 0 chr4 178277782 178277856 -6010806 + MARNA DNA Mariner 149 232 -354 180 0 0 0 chr4 178278129 178278149 -6010513 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 1922 78 90 8 chr4 178278161 178278429 -6010233 - AluSq SINE Alu -23 290 1 193 269 151 34 chr4 178279040 178279159 -6009503 + MIR SINE MIR 119 251 -11 766 289 78 0 chr4 178280662 178280894 -6007768 + MIR SINE MIR 13 262 0 2305 106 3 0 chr4 178282330 178282633 -6006029 + AluSp SINE Alu 1 304 -9 1336 203 136 15 chr4 178283494 178283898 -6004764 + LTR40c LTR ERVL 1 453 -12 207 167 42 0 chr4 178285231 178285279 -6003383 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 236 159 32 32 chr4 178286084 178286147 -6002515 - MLT1I LTR MaLR 0 409 347 1299 229 90 67 chr4 178286168 178286601 -6002061 - MLT1F LTR MaLR -99 443 1 479 300 137 25 chr4 178286601 178286876 -6001786 - MLT1I LTR MaLR -57 352 47 2083 126 0 0 chr4 178287090 178287375 -6001287 + AluSx SINE Alu 1 285 -27 23 0 0 0 chr4 178287388 178287411 -6001251 + AT_rich Low_complexity Low_complexity 1 23 0 909 192 12 17 chr4 178288008 178288180 -6000482 + FAM SINE Alu 1 171 -4 396 241 147 0 chr4 178288266 178288382 -6000280 - L2 LINE L2 -2 3311 3179 21 71 0 0 chr4 178288859 178288901 -5999761 + AT_rich Low_complexity Low_complexity 1 42 0 585 279 12 36 chr4 178289373 178289538 -5999124 - MIR3 SINE MIR -6 202 42 259 267 0 0 chr4 178290835 178290895 -5997767 + L3 LINE CR1 646 705 -872 675 248 20 56 chr4 178291027 178291277 -5997385 + L1ME2 LINE L1 5916 6156 -8 2357 93 3 0 chr4 178291391 178291701 -5996961 + AluSx SINE Alu 1 311 -1 611 171 31 8 chr4 178292062 178292191 -5996471 + Charlie5 DNA MER1_type 2453 2584 -28 383 335 25 80 chr4 178292210 178292485 -5996177 - L2 LINE L2 -688 2626 2367 285 273 0 23 chr4 178292555 178292643 -5996019 - MIR SINE MIR -128 134 49 2057 84 66 0 chr4 178292686 178292972 -5995690 + AluY SINE Alu 1 305 -6 1589 143 0 0 chr4 178293362 178293593 -5995069 + AluJb SINE Alu 1 231 -81 1522 186 7 18 chr4 178293796 178294081 -5994581 + AluJo SINE Alu 1 282 -30 23 33 0 0 chr4 178294850 178294880 -5993782 + AT_rich Low_complexity Low_complexity 1 30 0 1475 171 3 88 chr4 178294909 178295110 -5993552 - AluJb SINE Alu -12 300 136 1696 127 33 67 chr4 178295110 178295409 -5993253 + AluSx SINE Alu 1 289 -23 1475 171 3 88 chr4 178295409 178295535 -5993127 - AluJb SINE Alu -176 136 1 584 296 33 4 chr4 178296979 178297219 -5991443 - L1MEd LINE L1 -4969 1150 904 1671 177 0 23 chr4 178297573 178297873 -5990789 + AluJo SINE Alu 1 293 -19 230 346 25 0 chr4 178298221 178298302 -5990360 - MER117 DNA MER1_type 0 197 115 * 435 102 0 0 chr4 178298296 178298355 -5990307 + U2 snRNA snRNA 1 59 -129 278 275 0 0 chr4 178298353 178298422 -5990240 - MER117 DNA MER1_type -66 131 63 * 184 330 68 19 chr4 178300521 178300624 -5988038 - L2 LINE L2 -617 2697 2590 2604 198 36 0 chr4 178300624 178301128 -5987534 + MER74A LTR ERVL 7 528 -30 890 308 98 49 chr4 178301162 178301465 -5987197 - L2 LINE L2 -713 2601 2315 559 253 97 17 chr4 178301465 178301702 -5986960 + MER112 DNA MER1_type 1 256 0 890 308 98 49 chr4 178301702 178302201 -5986461 - L2 LINE L2 -999 2315 1759 236 357 27 9 chr4 178304047 178304159 -5984503 + L2 LINE L2 3200 3313 0 2227 99 3 0 chr4 178304744 178305036 -5983626 - AluSg SINE Alu -17 293 1 291 278 85 41 chr4 178305303 178305510 -5983152 - MIR SINE MIR -31 231 16 343 236 98 40 chr4 178305545 178305719 -5982943 - MER113 DNA MER1_type? -49 472 289 2222 85 3 3 chr4 178305726 178306008 -5982654 + AluSc SINE Alu 3 284 -25 2178 124 3 0 chr4 178307434 178307741 -5980921 - AluSx SINE Alu -4 308 1 247 211 19 0 chr4 178308482 178308534 -5980128 + (TATATG)n Simple_repeat Simple_repeat 4 56 0 193 242 11 74 chr4 178309184 178309279 -5979383 + MIR SINE MIR 128 216 -46 2186 125 0 0 chr4 178309562 178309858 -5978804 + AluSx SINE Alu 1 296 -16 2631 39 0 0 chr4 178310330 178310636 -5978026 - AluY SINE Alu -5 306 1 2396 203 104 23 chr4 178311190 178311795 -5976867 + MLT1E1 LTR MaLR 1 654 0 1114 228 32 10 chr4 178312000 178312311 -5976351 + MER33 DNA MER1_type 2 319 -5 230 180 98 0 chr4 178312322 178312383 -5976279 - HAL1b LINE L1 -50 1298 1232 368 238 0 12 chr4 178312962 178313046 -5975616 - L2 LINE L2 0 3313 3231 485 235 12 53 chr4 178313047 178313217 -5975445 - L2 LINE L2 -900 2414 2252 242 192 77 0 chr4 178313206 178313258 -5975404 + L2 LINE L2 3208 3263 -50 * 2268 73 21 0 chr4 178313580 178313869 -5974793 + AluSp SINE Alu 1 295 -18 213 360 128 64 chr4 178313961 178314164 -5974498 - L2 LINE L2 -25 3247 3032 664 261 142 9 chr4 178314238 178314449 -5974213 - MIR SINE MIR -13 249 11 1948 137 13 13 chr4 178315049 178315348 -5973314 + AluJo SINE Alu 1 299 -13 806 262 57 25 chr4 178315510 178315792 -5972870 - L1MEd LINE L1 -5416 703 413 22 35 0 0 chr4 178318447 178318476 -5970186 + AT_rich Low_complexity Low_complexity 1 29 0 2259 107 3 0 chr4 178318927 178319236 -5969426 + AluSx SINE Alu 1 310 -2 361 300 67 0 chr4 178319802 178319922 -5968740 + MIR SINE MIR 81 208 -54 405 0 0 0 chr4 178320805 178320850 -5967812 + (TG)n Simple_repeat Simple_repeat 2 46 0 242 262 36 48 chr4 178320895 178320979 -5967683 - MIR3 SINE MIR -23 185 103 27 29 0 0 chr4 178321203 178321237 -5967425 + AT_rich Low_complexity Low_complexity 1 34 0 2128 114 0 7 chr4 178322114 178322413 -5966249 - AluSx SINE Alu -15 297 1 303 188 71 35 chr4 178322622 178322707 -5965955 - MIR SINE MIR -50 212 125 979 218 22 67 chr4 178322796 178323108 -5965554 + MLT1A2 LTR MaLR 1 298 -76 254 271 80 26 chr4 178323256 178323407 -5965255 - L1MEd LINE L1 -5957 162 4 310 327 164 19 chr4 178323408 178323567 -5965095 - MIR SINE MIR -49 213 32 534 136 0 0 chr4 178323674 178323792 -5964870 + (TGGA)n Simple_repeat Simple_repeat 3 120 0 202 256 24 49 chr4 178324062 178324144 -5964518 + MIR SINE MIR 61 140 -122 1976 93 108 0 chr4 178324872 178325150 -5963512 - AluSx SINE Alu -4 308 1 235 311 68 0 chr4 178325415 178325489 -5963173 + MIR3 SINE MIR 82 160 -48 621 284 225 23 chr4 178325859 178326379 -5962283 + L2 LINE L2 2498 3198 -115 2378 157 14 27 chr4 178326379 178326819 -5961843 - Tigger2a DNA MER2_type 0 434 1 621 284 225 23 chr4 178326819 178326955 -5961707 + L2 LINE L2 3198 3305 -8 823 228 22 0 chr4 178326980 178327164 -5961498 - AluJb SINE Alu -4 308 121 2122 87 0 17 chr4 178327954 178328241 -5960421 + AluSx SINE Alu 23 304 -8 705 238 70 70 chr4 178328243 178328545 -5960117 - L1MEd LINE L1 -5503 616 315 1017 165 0 0 chr4 178328597 178328755 -5959907 + AluJb SINE Alu 1 158 -154 284 47 0 0 chr4 178328757 178328800 -5959862 + AluY SINE Alu 260 302 0 2050 119 31 0 chr4 178328819 178329112 -5959550 + AluSc SINE Alu 1 302 -7 414 261 43 26 chr4 178329244 178329359 -5959303 + L2 LINE L2 3191 3307 -6 266 248 48 57 chr4 178329359 178329464 -5959198 - L1MEd LINE L1 -6010 109 6 198 103 0 0 chr4 178330358 178330387 -5958275 + (T)n Simple_repeat Simple_repeat 1 29 0 1974 110 43 4 chr4 178330683 178330964 -5957698 + AluSx SINE Alu 1 292 -20 235 250 0 33 chr4 178331337 178331397 -5957265 + L1MEd LINE L1 6 63 -6056 210 37 0 0 chr4 178331579 178331606 -5957056 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 211 226 0 48 chr4 178331634 178331696 -5956966 + CT-rich Low_complexity Low_complexity 2 60 0 191 184 26 0 chr4 178332513 178332551 -5956111 - L2 LINE L2 -8 3305 3267 1724 176 0 28 chr4 178333341 178333660 -5955002 + AluJb SINE Alu 1 310 -2 1953 139 3 13 chr4 178334120 178334421 -5954241 + AluJb SINE Alu 1 298 -14 223 244 26 64 chr4 178334983 178335061 -5953601 - MIR SINE MIR -71 191 117 225 94 0 0 chr4 178337111 178337143 -5951519 + (T)n Simple_repeat Simple_repeat 1 32 0 290 322 76 17 chr4 178337812 178337930 -5950732 + L3 LINE CR1 1429 1553 -24 438 276 41 53 chr4 178337932 178338102 -5950560 - L3 LINE CR1 -145 1432 1265 776 196 88 10 chr4 178339668 178339872 -5948790 + L1M4 LINE L1 4155 4374 -1772 2749 158 23 6 chr4 178341603 178342121 -5946541 - L1MA4 LINE L1 -5 6295 5769 437 94 0 115 chr4 178342134 178342230 -5946432 - L1PA8 LINE L1 -1 6171 6087 2614 138 43 8 chr4 178342230 178342715 -5945947 - L1MA4 LINE L1 -515 5785 5290 281 26 26 0 chr4 178342736 178342774 -5945888 + (TTG)n Simple_repeat Simple_repeat 1 39 0 243 170 0 0 chr4 178343092 178343139 -5945523 + (CATAA)n Simple_repeat Simple_repeat 2 48 0 22 0 0 0 chr4 178343362 178343384 -5945278 + AT_rich Low_complexity Low_complexity 1 22 0 1521 204 13 10 chr4 178343903 178344211 -5944451 - AluJb SINE Alu -3 309 1 1296 176 45 83 chr4 178344286 178344598 -5944064 + AluJb SINE Alu 1 300 -12 186 319 53 44 chr4 178344615 178344728 -5943934 - MIR SINE MIR -69 139 26 441 296 73 28 chr4 178344880 178345059 -5943603 - MIR SINE MIR -73 189 3 2345 87 0 3 chr4 178345519 178345830 -5942832 - AluY SINE Alu -1 310 1 302 151 14 82 chr4 178346128 178346201 -5942461 + L2 LINE L2 3171 3238 -75 514 147 0 0 chr4 178346513 178346588 -5942074 - FLAM SINE Alu -20 123 49 749 176 0 15 chr4 178346801 178346937 -5941725 + AluJ SINE Alu 1 134 -178 37 23 0 0 chr4 178346937 178346981 -5941681 + AT_rich Low_complexity Low_complexity 1 44 0 561 31 104 12 chr4 178346981 178347144 -5941518 + (TA)n Simple_repeat Simple_repeat 2 179 0 683 208 0 8 chr4 178347144 178347274 -5941388 + AluJ SINE Alu 133 261 -51 1920 112 49 0 chr4 178347399 178347686 -5940976 + AluSq SINE Alu 1 301 -12 240 243 14 14 chr4 178348016 178348086 -5940576 + MIR SINE MIR 74 143 -119 438 246 144 8 chr4 178348093 178348211 -5940451 - L2 LINE L2 -1 3312 3179 28 48 0 0 chr4 178348279 178348321 -5940341 + AT_rich Low_complexity Low_complexity 1 42 0 2290 93 0 10 chr4 178348332 178348633 -5940029 - AluY SINE Alu -13 298 1 1799 141 11 3 chr4 178348636 178348800 -5939862 - AluSg SINE Alu -24 286 118 279 0 0 0 chr4 178348800 178348831 -5939831 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1799 141 11 3 chr4 178348831 178348950 -5939712 - AluSg SINE Alu -192 118 1 255 255 193 14 chr4 178350186 178350331 -5938331 - L2 LINE L2 -146 3167 2997 2062 111 26 41 chr4 178350542 178350884 -5937778 + MER1B DNA MER1_type 1 337 0 1141 223 75 16 chr4 178351203 178351521 -5937141 + MER58B DNA MER1_type 5 341 0 903 274 32 16 chr4 178351724 178351972 -5936690 - MIR SINE MIR -3 259 8 829 256 34 21 chr4 178352506 178352740 -5935922 - MIR SINE MIR -13 249 13 269 410 25 0 chr4 178353104 178353226 -5935436 - L3 LINE CR1 -70 1507 1383 355 253 56 81 chr4 178354348 178354546 -5934116 - MER117 DNA MER1_type 0 197 5 1555 87 4 13 chr4 178354885 178355115 -5933547 + L1PA10 LINE L1 5931 6158 -10 200 60 80 20 chr4 178355135 178355185 -5933477 + T-rich Low_complexity Low_complexity 4 56 0 233 292 0 42 chr4 178355620 178355692 -5932970 - L2 LINE L2 -5 3267 3199 289 309 10 31 chr4 178355988 178356085 -5932577 - 7SK RNA RNA -96 97 3 263 264 94 38 chr4 178356401 178356507 -5932155 - L1ME4a LINE L1 -55 6066 5955 285 262 162 5 chr4 178356849 178357040 -5931622 - L1ME4a LINE L1 -2331 5477 5257 1759 169 0 25 chr4 178357315 178357634 -5931028 - AluJo SINE Alu -1 311 1 415 243 176 0 chr4 178358026 178358162 -5930500 - MIR SINE MIR -21 241 82 320 312 178 0 chr4 178358335 178358492 -5930170 - MER5A DNA MER1_type -2 187 3 754 213 46 6 chr4 178358525 178358699 -5929963 + MER3 DNA MER1_type 28 208 -1 198 0 0 0 chr4 178359107 178359129 -5929533 + (A)n Simple_repeat Simple_repeat 1 22 0 587 238 67 36 chr4 178359654 178359847 -5928815 - L1MB7 LINE L1 -2 6182 5984 1886 95 72 4 chr4 178360854 178361118 -5927544 + AluSg SINE Alu 1 282 -28 28 0 0 0 chr4 178361426 178361454 -5927208 + AT_rich Low_complexity Low_complexity 1 28 0 1862 122 20 36 chr4 178361592 178361896 -5926766 + AluJb SINE Alu 1 299 -13 588 152 72 80 chr4 178362017 178362155 -5926507 + AluJb SINE Alu 2 138 -174 562 297 95 13 chr4 178362381 178362613 -5926049 + L3b LINE CR1 1116 1366 -217 838 177 23 23 chr4 178362937 178363112 -5925550 - FAM SINE Alu 0 175 1 1970 42 4 0 chr4 178363152 178363393 -5925269 + L1PA4 LINE L1 5911 6152 -3 488 299 73 0 chr4 178364348 178364400 -5924262 - MIR SINE MIR -6 256 209 222 118 0 0 chr4 178364400 178364434 -5924228 + (TG)n Simple_repeat Simple_repeat 1 34 0 488 299 73 0 chr4 178364434 178364558 -5924104 - MIR SINE MIR -53 209 67 21 36 0 0 chr4 178365292 178365320 -5923342 + AT_rich Low_complexity Low_complexity 1 28 0 192 227 23 0 chr4 178365409 178365453 -5923209 + L2 LINE L2 3225 3269 -3 27 73 0 0 chr4 178366370 178366425 -5922237 + AT_rich Low_complexity Low_complexity 1 55 0 216 0 0 0 chr4 178368981 178369005 -5919657 + (T)n Simple_repeat Simple_repeat 1 24 0 1637 82 60 19 chr4 178369655 178369923 -5918739 + L1MA3 LINE L1 6027 6305 0 22 0 0 0 chr4 178369934 178369956 -5918706 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr4 178370632 178370664 -5917998 + AT_rich Low_complexity Low_complexity 1 32 0 52 58 0 0 chr4 178370733 178370820 -5917842 + AT_rich Low_complexity Low_complexity 1 87 0 351 186 206 79 chr4 178370856 178371109 -5917553 + L1ME4a LINE L1 5833 6117 -4 541 77 13 0 chr4 178371354 178371432 -5917230 - MADE1 DNA Mariner 0 80 2 564 15 0 0 chr4 178371481 178371546 -5917116 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 304 161 36 0 chr4 178371848 178371904 -5916758 + MLT1B LTR MaLR 1 58 -332 263 120 60 0 chr4 178371913 178371963 -5916699 + MLT1C LTR MaLR 370 422 -45 2127 119 7 7 chr4 178372446 178372458 -5916204 - AluSg SINE Alu -13 297 286 432 0 0 0 chr4 178372458 178372506 -5916156 + (TG)n Simple_repeat Simple_repeat 2 49 0 2127 119 7 7 chr4 178372506 178372788 -5915874 - AluSg SINE Alu -23 287 3 193 220 0 85 chr4 178372867 178372926 -5915736 - MIR SINE MIR -137 125 72 51 58 0 0 chr4 178373620 178373706 -5914956 + AT_rich Low_complexity Low_complexity 1 86 0 1934 112 3 64 chr4 178374286 178374599 -5914063 + AluSx SINE Alu 1 294 -18 21 36 0 0 chr4 178374682 178374710 -5913952 + AT_rich Low_complexity Low_complexity 1 28 0 196 210 12 99 chr4 178374750 178374831 -5913831 - MIR SINE MIR -71 191 118 551 280 133 28 chr4 178375201 178375419 -5913243 - L3 LINE CR1 -6 1571 1331 816 103 9 9 chr4 178375489 178375605 -5913057 - FLAM_C SINE Alu -25 118 3 185 241 24 24 chr4 178375609 178375692 -5912970 - L3 LINE CR1 -304 1273 1191 210 91 0 0 chr4 178375698 178375731 -5912931 + (TTTTTG)n Simple_repeat Simple_repeat 6 38 0 183 296 20 71 chr4 178375731 178375829 -5912833 + L2 LINE L2 3221 3313 0 1045 251 165 59 chr4 178378357 178379115 -5909547 + L2 LINE L2 2513 3313 0 374 324 66 16 chr4 178379257 178379439 -5909223 + L2 LINE L2 2492 2682 -632 1637 245 72 0 chr4 178379616 178380048 -5908614 + L1ME2 LINE L1 5449 5911 -253 239 264 91 33 chr4 178380553 178380674 -5907988 + HsTC2 DNA Tc2 1 128 -1770 292 288 0 15 chr4 178380961 178381027 -5907635 + MIR SINE MIR 84 148 -60 2288 101 0 0 chr4 178381061 178381358 -5907304 - AluSc SINE Alu -10 299 3 1481 122 9 0 chr4 178381454 178381667 -5906995 - AluSg/x SINE Alu -12 300 86 1200 133 78 32 chr4 178382036 178382254 -5906408 + MER30 DNA MER1_type 1 228 -2 211 205 0 0 chr4 178382995 178383034 -5905628 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 1014 194 53 0 chr4 178383832 178384038 -5904624 - MER20 DNA MER1_type -1 218 2 793 254 250 37 chr4 178384063 178384555 -5904107 - L2 LINE L2 -773 2541 1945 2771 175 31 13 chr4 178384808 178385351 -5903311 - MER68 LTR ERV1 -7 555 3 265 275 259 8 chr4 178385573 178385704 -5902958 + MIR SINE MIR 92 255 -7 1803 149 48 7 chr4 178386604 178386893 -5901769 + AluJb SINE Alu 2 302 -10 1824 107 16 0 chr4 178387002 178387254 -5901408 + AluSg1 SINE Alu 35 290 -19 1850 143 3 20 chr4 178387977 178388278 -5900384 + AluJo SINE Alu 1 296 -16 490 203 0 81 chr4 178388348 178388471 -5900191 + MIR SINE MIR 150 262 0 29 47 0 0 chr4 178388475 178388518 -5900144 + AT_rich Low_complexity Low_complexity 1 43 0 3275 188 19 15 chr4 178390679 178391350 -5897312 - L1MB2 LINE L1 -2 6169 5496 2105 122 10 14 chr4 178391749 178392045 -5896617 - AluSx SINE Alu -17 295 1 1516 228 78 44 chr4 178392052 178392553 -5896109 - L1ME3A LINE L1 -8 6162 5645 255 344 26 46 chr4 178393469 178393620 -5895042 + MIR SINE MIR 103 250 -12 182 65 65 22 chr4 178394045 178394091 -5894571 + CT-rich Low_complexity Low_complexity 2 49 0 315 0 0 0 chr4 178394350 178394385 -5894277 + (TA)n Simple_repeat Simple_repeat 1 35 0 2146 98 0 20 chr4 178394869 178395174 -5893488 + AluSx SINE Alu 1 299 -13 302 173 19 0 chr4 178395598 178395650 -5893012 - L2 LINE L2 0 3313 3261 44 75 0 0 chr4 178396508 178396601 -5892061 + AT_rich Low_complexity Low_complexity 1 93 0 700 240 18 42 chr4 178399221 178399438 -5889224 + MER112 DNA MER1_type 1 212 -48 24 0 0 0 chr4 178400996 178401020 -5887642 + AT_rich Low_complexity Low_complexity 1 24 0 387 284 16 8 chr4 178401316 178401443 -5887219 + MER94 DNA DNA 4 131 -3 2470 75 0 0 chr4 178401760 178402067 -5886595 + AluSx SINE Alu 1 307 -5 308 279 191 19 chr4 178402448 178402663 -5885999 + MIR SINE MIR 1 252 -10 207 0 0 0 chr4 178403759 178403782 -5884880 + (ATTG)n Simple_repeat Simple_repeat 3 25 0 836 185 12 31 chr4 178403783 178403945 -5884717 - AluJb SINE Alu -23 289 131 410 134 0 24 chr4 178404717 178404799 -5883863 - AluS SINE Alu -243 60 1 261 314 85 39 chr4 178405192 178405345 -5883317 + MIR SINE MIR 14 173 -89 1762 166 3 11 chr4 178405917 178406201 -5882461 + AluJo SINE Alu 1 282 -30 297 213 0 0 chr4 178406210 178406257 -5882405 - AluSg/x SINE Alu -122 178 132 1836 176 0 10 chr4 178406263 178406565 -5882097 - AluJb SINE Alu -13 299 1 314 288 12 0 chr4 178406577 178406657 -5882005 - MIR SINE MIR -85 123 43 21 0 0 0 chr4 178406756 178406777 -5881885 + AT_rich Low_complexity Low_complexity 1 21 0 34 24 0 0 chr4 178406897 178406938 -5881724 + AT_rich Low_complexity Low_complexity 1 41 0 1095 232 88 23 chr4 178406972 178407504 -5881158 - Charlie7 DNA MER1_type -481 2131 1525 2144 111 0 16 chr4 178407504 178407810 -5880852 + AluSx SINE Alu 1 301 -11 1095 232 88 23 chr4 178407810 178407860 -5880802 - Charlie7 DNA MER1_type -1087 1525 1480 389 254 200 0 chr4 178407885 178408070 -5880592 - Charlie7 DNA MER1_type -2318 294 73 180 257 248 28 chr4 178408135 178408244 -5880418 + MIR3 SINE MIR 9 141 -67 246 32 0 0 chr4 178408258 178408289 -5880373 + (CA)n Simple_repeat Simple_repeat 2 32 0 21 36 0 0 chr4 178408629 178408657 -5880005 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 178408713 178408734 -5879928 + AT_rich Low_complexity Low_complexity 1 21 0 210 71 0 0 chr4 178410562 178410590 -5878072 + (TA)n Simple_repeat Simple_repeat 2 29 0 256 200 520 8 chr4 178411491 178411616 -5877046 + MER5A DNA MER1_type 1 189 0 826 20 0 0 chr4 178411759 178411857 -5876805 - L1HS LINE L1 -195 5960 5863 1754 19 0 0 chr4 178411857 178412057 -5876605 + L1PA2 LINE L1 5951 6155 0 330 50 0 0 chr4 178412060 178412100 -5876562 + AluY SINE Alu 66 105 -196 2203 102 0 17 chr4 178414667 178414962 -5873700 + AluSc SINE Alu 1 290 -19 1124 138 0 0 chr4 178416263 178416422 -5872240 - FRAM SINE Alu -25 151 1 254 30 30 0 chr4 178416435 178416468 -5872194 + AluY SINE Alu 17 50 -252 1999 132 0 13 chr4 178517964 178518274 -5770388 - AluJb SINE Alu -6 306 1 2152 98 3 10 chr4 178519073 178519370 -5769292 - AluSx SINE Alu -13 299 5 411 332 31 31 chr4 178519380 178519576 -5769086 - L2 LINE L2 -1 3271 3076 499 152 38 0 chr4 178519999 178520078 -5768584 + AluJ/FRAM SINE Alu 223 304 -8 823 183 11 0 chr4 178520086 178520261 -5768401 + GA-rich Low_complexity Low_complexity 1 177 0 2359 81 0 3 chr4 178520551 178520849 -5767813 - AluY SINE Alu -14 297 1 21 0 0 0 chr4 178521355 178521376 -5767286 + AT_rich Low_complexity Low_complexity 1 21 0 970 121 25 6 chr4 178522055 178522212 -5766450 + MER1B DNA MER1_type 1 160 -137 1656 123 8 0 chr4 178522321 178522564 -5766098 + L1PA15 LINE L1 5796 6040 -125 1090 149 11 0 chr4 178522564 178522739 -5765923 + AluSg/x SINE Alu 133 309 -3 785 183 0 14 chr4 178522740 178522882 -5765780 + L1PA15 LINE L1 6026 6165 0 632 279 91 10 chr4 178522941 178523149 -5765513 + L2 LINE L2 2115 2339 -975 1380 164 46 39 chr4 178523154 178523504 -5765158 - MSTA LTR MaLR -12 416 1 262 319 6 95 chr4 178523594 178523763 -5764899 + L2 LINE L2 2461 2614 -700 797 170 15 7 chr4 178523857 178523992 -5764670 + AluJo SINE Alu 2 137 -175 330 87 0 0 chr4 178524027 178524073 -5764589 + (CA)n Simple_repeat Simple_repeat 1 46 0 241 175 175 61 chr4 178524099 178524175 -5764487 + L2 LINE L2 2736 2831 -483 448 32 254 0 chr4 178524175 178524238 -5764424 - MADE1 DNA Mariner -1 79 1 241 175 175 61 chr4 178524238 178524275 -5764387 + L2 LINE L2 2831 2862 -452 1916 106 4 0 chr4 178524316 178524562 -5764100 - AluSx SINE Alu -64 248 2 381 214 60 0 chr4 178524562 178524646 -5764016 + MER3 DNA MER1_type 121 209 0 686 302 134 22 chr4 178524668 178524989 -5763673 + L2 LINE L2 2949 3305 -8 207 114 0 0 chr4 178524993 178525028 -5763634 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 1137 172 5 0 chr4 178525273 178525465 -5763197 - Tigger2 DNA MER2_type -2523 195 3 7083 183 48 45 chr4 178525467 178527300 -5761362 - L1M2 LINE L1 -743 5403 3736 211 200 0 0 chr4 178527390 178527430 -5761232 + CT-rich Low_complexity Low_complexity 2 41 0 279 0 0 0 chr4 178527500 178527531 -5761131 + (TG)n Simple_repeat Simple_repeat 2 32 0 740 286 107 15 chr4 178528115 178528451 -5760211 + L1MEd LINE L1 3 369 -5750 306 0 0 0 chr4 178529190 178529224 -5759438 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1872 137 6 48 chr4 178529317 178529632 -5759030 + AluSp SINE Alu 1 302 -11 2319 137 34 47 chr4 178529764 178530211 -5758451 - L1MA7 LINE L1 -7 6284 5844 744 129 0 68 chr4 178530323 178530455 -5758207 + MER1B DNA MER1_type 217 339 0 618 216 72 0 chr4 178530562 178530715 -5757947 - MER58C DNA MER1_type -8 207 44 2406 182 67 35 chr4 178530801 178530950 -5757712 - L1MC3 LINE L1 0 7785 7642 2305 99 0 0 chr4 178530950 178531244 -5757418 + AluSg SINE Alu 1 294 -16 2406 182 67 35 chr4 178531244 178531643 -5757019 - L1MC3 LINE L1 -143 7642 7219 334 164 41 0 chr4 178532330 178532403 -5756259 + L1MB7 LINE L1 5413 5488 -692 1739 153 53 20 chr4 178532410 178532711 -5755951 + AluSx SINE Alu 1 311 -1 272 95 48 16 chr4 178532712 178532775 -5755887 + GA-rich Low_complexity Low_complexity 5 69 0 579 184 38 26 chr4 178532778 178533455 -5755207 + L1MB7 LINE L1 5494 6174 0 2167 97 13 24 chr4 178533574 178533872 -5754790 + AluSq SINE Alu 1 295 -18 4670 155 22 36 chr4 178533981 178534853 -5753809 + L1MB3 LINE L1 5317 6176 -7 2016 167 14 8 chr4 178534868 178535227 -5753435 + L1MB4 LINE L1 5820 6180 0 201 74 0 0 chr4 178535998 178536025 -5752637 + (A)n Simple_repeat Simple_repeat 1 27 0 1025 166 90 31 chr4 178536761 178536984 -5751678 - MER106A DNA MER1_type 0 236 1 349 298 52 58 chr4 178537060 178537251 -5751411 + MIR SINE MIR 2 191 -71 196 194 0 0 chr4 178538287 178538323 -5750339 + L2 LINE L2 3227 3262 -10 298 271 16 54 chr4 178538374 178538503 -5750159 - MLT1I LTR MaLR -14 395 272 342 133 0 0 chr4 178540092 178540152 -5748510 + L1MC4 LINE L1 7983 8042 0 2234 113 13 0 chr4 178540278 178540578 -5748084 + AluSx SINE Alu 2 305 -7 2241 125 3 0 chr4 178540579 178540890 -5747772 + AluSx SINE Alu 1 312 0 336 24 0 0 chr4 178541679 178541720 -5746942 + (TC)n Simple_repeat Simple_repeat 1 41 0 22 0 0 0 chr4 178542240 178542262 -5746400 + AT_rich Low_complexity Low_complexity 1 22 0 838 193 0 44 chr4 178542560 178542741 -5745921 - MIR SINE MIR -78 184 12 243 61 0 0 chr4 178542877 178542910 -5745752 + (T)n Simple_repeat Simple_repeat 1 33 0 1904 158 13 0 chr4 178542962 178543260 -5745402 + AluJb SINE Alu 1 302 -10 302 311 42 25 chr4 178543550 178543669 -5744993 + MIR SINE MIR 42 162 -100 1482 204 0 32 chr4 178543701 178543986 -5744676 + AluJo SINE Alu 1 276 -36 2256 101 10 3 chr4 178543997 178544303 -5744359 - AluSx SINE Alu -4 308 1 1899 130 3 44 chr4 178544363 178544678 -5743984 - AluJo SINE Alu 0 312 11 21 81 0 14 chr4 178544944 178544978 -5743684 + AT_rich Low_complexity Low_complexity 1 34 -39 7438 51 17 10 chr4 178544978 178546350 -5742312 + L1PA6 LINE L1 4766 6143 -11 21 81 0 14 chr4 178546350 178546389 -5742273 + AT_rich Low_complexity Low_complexity 34 73 0 594 231 24 24 chr4 178546942 178547111 -5741551 + L1MC5 LINE L1 7073 7241 -720 305 150 250 0 chr4 178547143 178547223 -5741439 + L1MC5 LINE L1 7314 7413 -548 2530 61 3 0 chr4 178547269 178547565 -5741097 - AluSp SINE Alu -16 297 1 256 220 186 51 chr4 178547661 178547838 -5740824 + L1ME3A LINE L1 5962 6162 -8 381 247 103 35 chr4 178549546 178549695 -5738967 + MIR SINE MIR 62 219 -43 583 229 69 57 chr4 178549790 178549965 -5738697 + MER5A DNA MER1_type 13 189 0 237 308 47 9 chr4 178551256 178551431 -5737231 - MIR SINE MIR -12 250 23 22 0 0 0 chr4 178552110 178552132 -5736530 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 178552730 178552753 -5735909 + GC_rich Low_complexity Low_complexity 1 23 0 319 195 106 124 chr4 178552809 178553035 -5735627 - L1M2 LINE L1 -5862 987 766 276 308 34 26 chr4 178555014 178555131 -5733531 + MIR SINE MIR 64 181 -81 744 276 111 0 chr4 178555228 178555445 -5733217 - MIR SINE MIR -9 253 13 23 0 0 0 chr4 178555738 178555761 -5732901 + AT_rich Low_complexity Low_complexity 1 23 0 2209 75 27 10 chr4 178556201 178556496 -5732166 - AluSq SINE Alu -11 302 3 2184 103 13 7 chr4 178556503 178556804 -5731858 - AluSc SINE Alu -6 303 1 1555 97 0 23 chr4 178556835 178557051 -5731611 - AluSg/x SINE Alu -17 295 85 2090 114 7 7 chr4 178557777 178558076 -5730586 - AluSg SINE Alu -11 299 1 654 232 33 0 chr4 178558152 178558303 -5730359 + MIR SINE MIR 106 261 -1 1231 183 23 8 chr4 178558447 178558704 -5729958 + L1 LINE L1 4592 4852 -1294 2242 115 3 0 chr4 178558708 178559004 -5729658 - AluSx SINE Alu -15 297 1 6519 200 13 22 chr4 178559008 178560517 -5728145 - L1M4 LINE L1 -813 5333 3839 1273 79 0 24 chr4 178560543 178560708 -5727954 - L1PA10 LINE L1 -2 6166 6006 4437 106 9 11 chr4 178560709 178561350 -5727312 - L1P LINE L1 -3444 2702 2063 255 31 0 0 chr4 178561376 178561408 -5727254 + (TG)n Simple_repeat Simple_repeat 2 33 0 2922 25 0 0 chr4 178561410 178561736 -5726926 - LTR17 LTR ERV1 -454 326 1 2416 70 0 0 chr4 178561736 178562034 -5726628 - HERV17 LTR ERV1 0 8626 8329 260 128 0 0 chr4 178562018 178562057 -5726605 - HERV17 LTR ERV1 -1078 7548 7510 * 6847 64 6 0 chr4 178562046 178562879 -5725783 - HERV17 LTR ERV1 -2603 6023 5186 513 258 73 93 chr4 178562991 178563236 -5725426 + L1M4 LINE L1 3602 3840 -2306 7516 43 3 39 chr4 178563236 178564838 -5723824 + SVA Other Other 2 1390 0 513 258 73 93 chr4 178564838 178564989 -5723673 + L1M4 LINE L1 3839 3992 -2154 201 39 0 0 chr4 178565096 178565122 -5723540 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2101 101 3 52 chr4 178566401 178566709 -5721953 - AluSg SINE Alu -17 293 1 199 340 0 0 chr4 178567661 178567708 -5720954 - L2 LINE L2 -86 3186 3140 592 261 88 40 chr4 178567771 178568020 -5720642 - LTR48B LTR ERV1 0 644 384 986 176 39 24 chr4 178568086 178568326 -5720336 - LTR48 LTR ERV1 -469 238 1 193 322 78 17 chr4 178568330 178568445 -5720217 - L2 LINE L2 -206 3066 2945 1390 118 5 0 chr4 178570073 178570268 -5718394 + MER2 DNA MER2_type 150 345 0 834 156 0 31 chr4 178570339 178570467 -5718195 + FLAM_C SINE Alu 1 124 -19 3047 37 14 0 chr4 178570533 178570882 -5717780 + L1PA5 LINE L1 5799 6152 -2 1925 101 54 0 chr4 178571295 178571553 -5717109 - AluSx SINE Alu -40 272 1 293 106 0 21 chr4 178572051 178572098 -5716564 + MER89 LTR ERV1 2 47 -512 1910 153 65 6 chr4 178572100 178572439 -5716223 + MER89 LTR ERV1 201 559 0 300 294 65 15 chr4 178572894 178573078 -5715584 - MLT1L LTR MaLR -253 335 131 1413 335 37 11 chr4 178573207 178573876 -5714786 + HERV16 LTR ERVL 520 1206 -3790 3270 105 23 5 chr4 178573933 178574371 -5714291 + MER83 LTR ERV1 3 448 0 1274 91 11 0 chr4 178574681 178574856 -5713806 + L1MA2 LINE L1 6128 6304 0 307 300 25 55 chr4 178574923 178575123 -5713539 + HERV16 LTR ERVL 1743 1936 -3549 1745 119 98 4 chr4 178575592 178575869 -5712793 - AluJb SINE Alu -6 306 4 1045 187 53 53 chr4 178576352 178576614 -5712048 + MLT2A2 LTR ERVL 1 262 -191 1816 156 3 3 chr4 178576823 178577106 -5711556 - AluJb SINE Alu -29 283 1 324 221 47 12 chr4 178577212 178577298 -5711364 + MER117 DNA MER1_type 1 89 -108 26 64 0 0 chr4 178577470 178577517 -5711145 + AT_rich Low_complexity Low_complexity 1 47 0 23 0 0 0 chr4 178577725 178577748 -5710914 + AT_rich Low_complexity Low_complexity 1 23 0 351 276 60 76 chr4 178578503 178578804 -5709858 + L2 LINE L2 3014 3309 -4 1417 205 65 57 chr4 178579128 178579514 -5709148 + MLT1B LTR MaLR 1 389 -1 469 242 242 6 chr4 178579611 178579789 -5708873 - MIR SINE MIR -25 237 18 373 315 16 49 chr4 178580158 178580342 -5708320 - MER5A DNA MER1_type 0 189 12 315 137 177 105 chr4 178580441 178580519 -5708143 - L2 LINE L2 0 3313 3221 2044 133 3 10 chr4 178580519 178580827 -5707835 + AluSx SINE Alu 1 306 -6 315 137 177 105 chr4 178580827 178580872 -5707790 - L2 LINE L2 -92 3221 3181 410 281 92 20 chr4 178580928 178581081 -5707581 - MLT1I LTR MaLR 0 409 246 960 229 99 14 chr4 178581084 178581376 -5707286 - L2 LINE L2 -831 2483 2167 1056 244 4 9 chr4 178581996 178582221 -5706441 - MER58A DNA MER1_type 0 224 1 584 317 30 33 chr4 178582450 178582750 -5705912 + L1MEd LINE L1 869 1167 -5363 240 186 0 102 chr4 178582814 178582832 -5705830 + Tigger3(Golem) DNA MER2_type 56 74 -2955 1832 184 7 0 chr4 178582832 178583125 -5705537 + AluJb SINE Alu 1 295 -17 240 186 0 102 chr4 178583125 178583165 -5705497 + Tigger3(Golem) DNA MER2_type 74 108 -2921 * 3736 107 100 47 chr4 178583162 178583788 -5704874 + Tigger3(Golem) DNA MER2_type 2281 2951 -77 1558 123 50 0 chr4 178583788 178584007 -5704655 + MER30 DNA MER1_type 1 230 0 3736 107 100 47 chr4 178584007 178584090 -5704572 + Tigger3(Golem) DNA MER2_type 2951 3028 0 670 275 63 83 chr4 178584156 178584984 -5703678 + L1MEd LINE L1 1306 2122 -4599 22 0 0 0 chr4 178585070 178585092 -5703570 + AT_rich Low_complexity Low_complexity 1 22 0 349 310 35 0 chr4 178585297 178585410 -5703252 + L1MEd LINE L1 2465 2581 -3959 2008 93 52 10 chr4 178585412 178585702 -5702960 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr4 178585718 178585739 -5702923 + AT_rich Low_complexity Low_complexity 1 21 0 323 299 66 5 chr4 178585789 178586000 -5702662 + L1MEd LINE L1 2714 2937 -3603 700 243 103 49 chr4 178586105 178586472 -5702190 + L1MEd LINE L1 3268 3654 -2886 406 285 97 33 chr4 178586529 178586836 -5701826 + L1MEd LINE L1 3743 4078 -2462 2320 106 0 0 chr4 178586836 178587138 -5701524 + AluSg SINE Alu 1 302 -8 406 285 97 33 chr4 178587138 178587191 -5701471 + L1MEd LINE L1 4078 4126 -2414 249 242 30 0 chr4 178587229 178587295 -5701367 + HsTC2 DNA Tc2 36 103 -1795 732 218 0 35 chr4 178587314 178587484 -5701178 + FRAM SINE Alu 3 166 0 404 231 20 14 chr4 178587492 178587639 -5701023 + A-rich Low_complexity Low_complexity 3 150 0 813 254 82 49 chr4 178587758 178587878 -5700784 + L1MEd LINE L1 4197 4312 -2228 2687 26 0 0 chr4 178587878 178588184 -5700478 + AluY SINE Alu 1 306 -5 813 254 82 49 chr4 178588184 178588468 -5700194 + L1MEd LINE L1 4312 4614 -1926 368 292 54 63 chr4 178588530 178589198 -5699464 + L1MEd LINE L1 5135 5796 -744 1185 211 50 62 chr4 178589220 178589638 -5699024 - L1M4 LINE L1 -978 5168 4756 753 138 8 8 chr4 178589639 178589769 -5698893 + MLT2D LTR ERVL 2 131 -283 251 246 49 0 chr4 178589869 178589930 -5698732 + L2 LINE L2 3209 3272 0 * 403 312 83 12 chr4 178589911 178590112 -5698550 + MIR SINE MIR 8 223 -39 23 0 0 0 chr4 178590245 178590268 -5698394 + AT_rich Low_complexity Low_complexity 1 23 0 2356 68 14 0 chr4 178590281 178590574 -5698088 + AluY SINE Alu 1 297 -14 864 298 144 46 chr4 178591012 178591204 -5697458 - L3 LINE CR1 -129 1448 1276 382 288 32 0 chr4 178591204 178591329 -5697333 - MER94 DNA DNA -3 131 3 864 298 144 46 chr4 178591329 178591636 -5697026 - L3 LINE CR1 -301 1276 900 214 328 185 25 chr4 178591668 178591787 -5696875 - L3 LINE CR1 -1028 549 412 266 268 60 113 chr4 178591883 178592051 -5696611 - L2 LINE L2 0 3313 3155 264 182 0 0 chr4 178592111 178592155 -5696507 - Alu SINE Alu -15 287 244 27653 48 1 0 chr4 178592255 178595700 -5692962 - HERV17 LTR ERV1 -3535 5091 1644 4846 208 17 45 chr4 178595710 178597208 -5691454 - L1P3 LINE L1 -4112 2349 882 5293 157 22 51 chr4 178597221 178597879 -5690783 - L1M4c LINE L1 -3453 2929 2253 1834 174 14 0 chr4 178597879 178598172 -5690490 - AluJb SINE Alu -15 297 1 5293 157 22 51 chr4 178598172 178598218 -5690444 - L1M4c LINE L1 -4129 2253 2207 1584 204 0 17 chr4 178598218 178598544 -5690118 - AluJo SINE Alu 0 312 1 5293 157 22 51 chr4 178598544 178598817 -5689845 - L1M4c LINE L1 -4175 2207 1928 2387 88 0 0 chr4 178598817 178599114 -5689548 + AluY SINE Alu 1 297 -14 5293 157 22 51 chr4 178599114 178599671 -5688991 - L1M4c LINE L1 -4454 1928 1446 2478 152 35 5 chr4 178599672 178600105 -5688557 - Tigger2 DNA MER2_type 0 2718 2273 389 159 0 29 chr4 178600095 178600164 -5688498 - Tigger2 DNA MER2_type -2649 69 3 * 6527 172 57 13 chr4 178600166 178600505 -5688157 - L1M4c LINE L1 -4954 1430 1107 1526 100 45 0 chr4 178600505 178600725 -5687937 + MER30 DNA MER1_type 1 230 0 6527 172 57 13 chr4 178600725 178601751 -5686911 - L1M4c LINE L1 -5277 1107 5 1370 127 20 28 chr4 178601737 178601990 -5686672 - L1MB3 LINE L1 -356 5827 5577 * 3632 34 9 0 chr4 178602459 178602895 -5685767 - L1PA5 LINE L1 0 6154 5715 205 370 102 0 chr4 178602899 178603026 -5685636 + MIR3 SINE MIR 61 200 -8 2247 102 13 0 chr4 178603096 178603400 -5685262 + AluSq SINE Alu 1 308 -5 1676 156 30 43 chr4 178603417 178603719 -5684943 + AluJo SINE Alu 1 298 -14 1993 118 0 0 chr4 178604142 178604405 -5684257 - AluSg SINE Alu -47 263 1 483 114 0 0 chr4 178604405 178604475 -5684187 - FLAM_A SINE Alu -10 132 63 1247 212 59 41 chr4 178604710 178605153 -5683509 - L1MA9 LINE L1 -38 6274 5821 1721 140 50 29 chr4 178605427 178605737 -5682925 + AluJo SINE Alu 1 316 0 681 181 28 77 chr4 178606363 178606545 -5682117 - MER96 DNA MER1_type -2 173 1 232 305 0 12 chr4 178606918 178607000 -5681662 - Tigger8 DNA MER2_type -204 462 382 1988 74 0 4 chr4 178607626 178607868 -5680794 + AluSg SINE Alu 52 292 -18 252 86 0 0 chr4 178607876 178607911 -5680751 + AluSp SINE Alu 136 170 -133 354 278 82 62 chr4 178607912 178608218 -5680444 + L1MC/D LINE L1 3081 3392 -2754 285 285 38 39 chr4 178608368 178608639 -5680023 + L1MC/D LINE L1 3509 3778 -2368 28 0 0 0 chr4 178608649 178608677 -5679985 + AT_rich Low_complexity Low_complexity 1 28 0 288 0 0 0 chr4 178609029 178609061 -5679601 + (CA)n Simple_repeat Simple_repeat 2 33 0 864 288 81 26 chr4 178609076 178609610 -5679052 - L1ME3 LINE L1 -281 5881 5319 2064 131 10 0 chr4 178609645 178609942 -5678720 + AluSx SINE Alu 1 300 -12 287 277 0 45 chr4 178610148 178610260 -5678402 - L1ME3 LINE L1 -1159 4987 4881 521 256 69 55 chr4 178610265 178610379 -5678283 + L1MC/D LINE L1 5255 5366 -2442 2381 84 0 0 chr4 178610379 178610678 -5677984 + AluY SINE Alu 1 299 -12 521 256 69 55 chr4 178610678 178610926 -5677736 + L1MC/D LINE L1 5366 5622 -2186 1369 145 4 33 chr4 178610934 178611175 -5677487 + MER46A DNA MER2_type 2 235 -1 1660 129 90 25 chr4 178611244 178611523 -5677139 - AluJb SINE Alu -15 297 1 632 206 61 0 chr4 178611551 178611682 -5676980 + AluJb SINE Alu 137 275 -37 26 0 0 0 chr4 178611768 178611794 -5676868 + AT_rich Low_complexity Low_complexity 1 26 0 2154 88 3 42 chr4 178614366 178614673 -5673989 + AluSg SINE Alu 1 295 -15 766 118 7 83 chr4 178614694 178614838 -5673824 + FLAM_C SINE Alu 1 133 0 2465 84 7 0 chr4 178614942 178615250 -5673412 + AluSx SINE Alu 1 310 -2 484 259 96 7 chr4 178615913 178616048 -5672614 + MIR SINE MIR 17 163 -99 397 221 179 0 chr4 178616053 178616148 -5672514 - L2 LINE L2 -1 3271 3160 2673 140 62 0 chr4 178616248 178617055 -5671607 + L1P4 LINE L1 4777 5619 -546 2715 95 19 3 chr4 178617562 178617931 -5670731 - THE1C LTR MaLR 0 375 1 248 250 56 0 chr4 178618138 178618210 -5670452 - L1ME3A LINE L1 -90 6080 6005 233 293 0 0 chr4 178618418 178618476 -5670186 - MER5A DNA MER1_type -1 188 131 1381 172 34 22 chr4 178618480 178618822 -5669840 - L1MA9 LINE L1 -169 5962 5790 379 162 29 0 chr4 178618844 178618934 -5669728 + L1MA9 LINE L1 6169 6279 -20 412 259 78 89 chr4 178618961 178619412 -5669250 - L1MEd LINE L1 -1703 4426 3981 367 257 0 19 chr4 178619417 178619522 -5669140 + L1M4 LINE L1 3132 3234 -2912 425 197 174 72 chr4 178619526 178619749 -5668913 - L1MEd LINE L1 -2137 3992 3793 261 0 0 0 chr4 178619749 178619778 -5668884 + (TG)n Simple_repeat Simple_repeat 2 30 0 180 0 0 0 chr4 178619777 178619797 -5668865 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 425 197 174 72 chr4 178619778 178619800 -5668862 - L1MEd LINE L1 -2336 3793 3775 2618 58 0 3 chr4 178619800 178620112 -5668550 - AluY SINE Alu 0 311 1 425 197 174 72 chr4 178620112 178620148 -5668514 - L1MEd LINE L1 -2354 3775 3702 2033 133 3 10 chr4 178620269 178620577 -5668085 - AluSg SINE Alu -4 306 1 2414 133 21 0 chr4 178620638 178621020 -5667642 - MLT1B LTR MaLR 0 390 1 1121 280 96 27 chr4 178621022 178621959 -5666703 - L1MEd LINE L1 -2743 3386 2385 500 240 59 113 chr4 178621974 178622046 -5666616 - L1MEd LINE L1 -3947 2363 2289 1702 197 0 27 chr4 178622046 178622345 -5666317 - AluJo SINE Alu -21 291 1 500 240 59 113 chr4 178622345 178622536 -5666126 - L1MEd LINE L1 -4021 2289 2119 2278 113 10 0 chr4 178622536 178622845 -5665817 - AluSx SINE Alu 0 312 1 500 240 59 113 chr4 178622845 178622917 -5665745 - L1MEd LINE L1 -4191 2119 2045 705 263 81 28 chr4 178623247 178623879 -5664783 - L1MEd LINE L1 -4724 1586 895 * 2494 210 56 62 chr4 178623864 178624962 -5663700 - L1ME LINE L1 -576 5586 4499 261 156 0 22 chr4 178624962 178625007 -5663655 - Alu SINE Alu -24 278 235 12536 182 33 10 chr4 178625009 178626729 -5661933 - L1PBa LINE L1 -1209 5653 3975 180 0 0 0 chr4 178626729 178626749 -5661913 + (TTG)n Simple_repeat Simple_repeat 2 21 0 12536 182 33 10 chr4 178626749 178627732 -5660930 - L1PBa LINE L1 -2887 3975 3017 2179 146 0 0 chr4 178627732 178628033 -5660629 - AluSx SINE Alu -11 301 1 12536 182 33 10 chr4 178628033 178629082 -5659580 - L1PBa LINE L1 -3845 3017 1789 691 119 0 63 chr4 178629997 178630123 -5658539 + FRAM SINE Alu 45 162 -14 184 318 156 39 chr4 178630546 178631084 -5657578 - L2 LINE L2 -668 2646 2046 2056 140 12 75 chr4 178631156 178631456 -5657206 - MLT1B LTR MaLR -2 388 120 2139 115 14 0 chr4 178631456 178631744 -5656918 - AluSx SINE Alu -18 294 3 2056 140 12 75 chr4 178631744 178631857 -5656805 - MLT1B LTR MaLR -270 120 1 717 235 28 28 chr4 178631932 178632111 -5656551 - MIR SINE MIR -21 241 63 1943 131 21 0 chr4 178632465 178632756 -5655906 + AluJo SINE Alu 1 297 -15 2342 90 13 7 chr4 178632805 178633115 -5655547 - AluSx SINE Alu 0 312 1 222 192 0 0 chr4 178633270 178633322 -5655340 + (CA)n Simple_repeat Simple_repeat 2 53 0 2455 50 7 3 chr4 178634067 178634367 -5654295 - AluY SINE Alu -10 301 1 2260 103 0 0 chr4 178634374 178634666 -5653996 - AluSx SINE Alu -20 292 1 291 317 92 24 chr4 178634847 178635011 -5653651 - MIR SINE MIR -81 181 7 2226 102 3 7 chr4 178636721 178637015 -5651647 - AluY SINE Alu -18 293 1 783 236 6 0 chr4 178637174 178637339 -5651323 + FRAM SINE Alu 1 166 0 1679 131 99 28 chr4 178637436 178637719 -5650943 + AluJo SINE Alu 1 303 -9 318 130 0 0 chr4 178637719 178637765 -5650897 + Alu SINE Alu 2 47 -255 1672 82 0 0 chr4 178637768 178637974 -5650688 + AluSg/x SINE Alu 91 296 -16 2236 195 124 2 chr4 178638014 178638531 -5650131 - L1MD3 LINE L1 -10 7985 7406 2288 105 0 0 chr4 178638537 178638832 -5649830 - AluSq SINE Alu -18 295 1 381 261 11 11 chr4 178638834 178638922 -5649740 - MLT1F1 LTR MaLR -445 122 35 233 175 330 21 chr4 178638922 178638970 -5649692 - L1MD3 LINE L1 -879 7116 7084 192 77 0 0 chr4 178638970 178638996 -5649666 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 233 175 330 21 chr4 178638996 178639044 -5649618 - L1MD3 LINE L1 -911 7084 6990 2130 171 36 28 chr4 178639044 178639593 -5649069 + MLT2A2 LTR ERVL 1 554 0 1556 213 41 74 chr4 178639593 178640090 -5648572 - L1MC3 LINE L1 -812 6973 6494 2350 33 65 0 chr4 178640090 178640365 -5648297 - AluY SINE Alu -18 293 1 1556 213 41 74 chr4 178640365 178640408 -5648254 - L1MC3 LINE L1 -1291 6494 6451 802 273 13 4 chr4 178640524 178640755 -5647907 + MIR SINE MIR 15 247 -15 28 48 0 0 chr4 178640850 178640892 -5647770 + AT_rich Low_complexity Low_complexity 1 42 0 1676 169 19 16 chr4 178640892 178641021 -5647641 + AluJb SINE Alu 1 128 -184 186 43 0 0 chr4 178641021 178641044 -5647618 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1676 169 19 16 chr4 178641044 178641222 -5647440 + AluJb SINE Alu 128 309 -3 2299 88 3 0 chr4 178641620 178641951 -5646711 - AluSg SINE Alu 0 332 1 825 152 8 0 chr4 178641954 178642086 -5646576 - AluJo/FLAM SINE Alu -169 133 1 1828 180 0 3 chr4 178642097 178642403 -5646259 - AluJb SINE Alu -7 305 1 498 219 37 0 chr4 178642590 178642716 -5645946 + L1ME LINE L1 5502 5634 -487 422 307 47 13 chr4 178642727 178642877 -5645785 + MER5A DNA MER1_type 7 161 -28 1808 189 10 0 chr4 178642877 178643184 -5645478 + AluJo SINE Alu 1 310 -2 1210 172 38 29 chr4 178643271 178643351 -5645311 - AluJo SINE Alu -101 211 133 2419 56 0 7 chr4 178643351 178643677 -5644985 - AluY SINE Alu 0 324 1 1210 172 38 29 chr4 178643677 178643804 -5644858 - AluJo SINE Alu -179 133 1 1164 190 261 26 chr4 178643804 178644115 -5644547 - MSTD LTR MaLR -43 353 1 3221 229 74 74 chr4 178644490 178644576 -5644086 + L1MC4 LINE L1 6445 6529 -1513 2297 139 31 17 chr4 178644576 178644935 -5643727 - THE1B LTR MaLR 0 364 1 3221 229 74 74 chr4 178644935 178645329 -5643333 + L1MC4 LINE L1 6529 6921 -1121 1006 176 30 0 chr4 178645329 178645528 -5643134 + L1MB3 LINE L1 5972 6176 -7 3221 229 74 74 chr4 178645528 178645585 -5643077 + L1MC4 LINE L1 6921 6976 -1066 1733 190 46 30 chr4 178645585 178645953 -5642709 + MLT1A2 LTR MaLR 1 374 0 3221 229 74 74 chr4 178645953 178645965 -5642697 + L1MC4 LINE L1 6976 6986 -1056 2158 127 0 0 chr4 178645965 178646257 -5642405 - AluSx SINE Alu -18 294 3 3221 229 74 74 chr4 178646257 178646907 -5641755 + L1MC4 LINE L1 6986 7634 -408 1949 143 143 19 chr4 178646907 178647285 -5641377 - MSTA LTR MaLR 0 428 4 3221 229 74 74 chr4 178647285 178647356 -5641306 + L1MC4 LINE L1 7634 7703 -339 2276 99 3 3 chr4 178647356 178647648 -5641014 + AluSx SINE Alu 1 292 -20 3221 229 74 74 chr4 178647648 178647890 -5640772 + L1MC4 LINE L1 7703 8042 0 2033 136 3 0 chr4 178647953 178648261 -5640401 - AluSx SINE Alu -3 309 1 847 98 7 85 chr4 178648387 178648540 -5640122 + FLAM_C SINE Alu 1 141 -2 2363 122 0 0 chr4 178648894 178649206 -5639456 - AluSx SINE Alu 0 312 1 218 307 11 23 chr4 178649941 178650029 -5638633 + L2 LINE L2 2549 2635 -679 576 229 136 31 chr4 178650377 178650635 -5638027 - L1MC4a LINE L1 -1913 5895 5611 306 0 0 0 chr4 178650635 178650669 -5637993 + (TG)n Simple_repeat Simple_repeat 2 35 0 899 167 56 0 chr4 178650682 178650826 -5637836 - FAM SINE Alu -18 167 16 2327 92 3 3 chr4 178650834 178651140 -5637522 - AluSq SINE Alu -7 306 1 11132 116 24 62 chr4 178653245 178653620 -5635042 + Tigger2 DNA MER2_type 638 1026 -1692 2255 118 0 0 chr4 178653620 178653925 -5634737 + AluSx SINE Alu 1 305 -7 11132 116 24 62 chr4 178653925 178654096 -5634566 + Tigger2 DNA MER2_type 1026 1202 -1516 1833 146 16 29 chr4 178654096 178654412 -5634250 - AluSx SINE Alu 0 312 1 11132 116 24 62 chr4 178654412 178655251 -5633411 + Tigger2 DNA MER2_type 1202 1933 -785 1968 91 11 29 chr4 178655251 178655525 -5633137 - AluSx SINE Alu -6 306 38 11132 116 24 62 chr4 178655525 178656051 -5632611 + Tigger2 DNA MER2_type 1933 2478 -240 6292 142 3 19 chr4 178656068 178657113 -5631549 - L1MA4 LINE L1 -15 6285 5258 2143 92 39 3 chr4 178657127 178657411 -5631251 + AluSc SINE Alu 1 294 -15 263 194 28 56 chr4 178657502 178657574 -5631088 + L1MA9 LINE L1 6167 6236 -76 2135 139 0 0 chr4 178657582 178657883 -5630779 - AluSx SINE Alu -11 301 1 362 269 90 45 chr4 178658291 178658492 -5630170 - L1ME3A LINE L1 -208 5962 5753 242 28 0 28 chr4 178658849 178658885 -5629777 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2367 68 0 0 chr4 178658910 178659190 -5629472 - AluSp SINE Alu -33 280 1 1519 149 3 63 chr4 178659292 178659607 -5629055 - L1MB4 LINE L1 -9 6171 5876 2261 87 4 0 chr4 178659930 178660249 -5628413 - AluSx SINE Alu 0 325 6 246 283 0 33 chr4 178660474 178660566 -5628096 - L1ME3 LINE L1 -196 5966 5878 * 4522 167 45 50 chr4 178660564 178660975 -5627687 - L1MB3 LINE L1 0 6183 5771 2327 92 16 0 chr4 178660975 178661281 -5627381 - AluSp SINE Alu -2 311 1 1931 160 0 3 chr4 178661285 178661597 -5627065 - AluJb SINE Alu -1 311 1 4522 167 45 50 chr4 178661597 178661966 -5626696 - L1MB3 LINE L1 -415 5768 5399 1031 194 0 0 chr4 178661966 178662141 -5626521 - FAM SINE Alu 0 175 1 4522 167 45 50 chr4 178662141 178662910 -5625752 - L1MB3 LINE L1 -784 5399 4641 617 239 141 15 chr4 178662977 178663240 -5625422 - L1ME3 LINE L1 -365 5805 5510 1602 201 99 8 chr4 178663257 178663620 -5625042 + MSTD LTR MaLR 1 396 0 372 291 0 17 chr4 178663631 178663748 -5624914 + L1ME LINE L1 5708 5822 -299 725 250 30 68 chr4 178663749 178663917 -5624745 - MIR SINE MIR 0 262 104 2277 93 0 3 chr4 178663917 178664208 -5624454 + AluSg SINE Alu 5 294 -16 725 250 30 68 chr4 178664208 178664275 -5624387 - MIR SINE MIR -158 104 36 226 238 12 50 chr4 178664666 178664746 -5623916 + L2 LINE L2 1331 1407 -1907 2680 183 30 32 chr4 178665369 178665730 -5622932 + MER74A LTR ERVL 1 362 -196 2500 74 0 3 chr4 178665730 178666039 -5622623 + AluSc SINE Alu 1 308 -1 2680 183 30 32 chr4 178666039 178666236 -5622426 + MER74A LTR ERVL 362 558 0 1528 184 69 94 chr4 178666314 178666477 -5622185 + MLT1C LTR MaLR 1 167 -300 870 141 0 15 chr4 178666477 178666612 -5622050 + FLAM_C SINE Alu 1 133 0 1528 184 69 94 chr4 178666612 178666927 -5621735 + MLT1C LTR MaLR 167 467 0 2146 136 17 75 chr4 178666962 178667138 -5621524 + MLT1B LTR MaLR 3 188 -202 2346 84 0 0 chr4 178667138 178667422 -5621240 + AluSc SINE Alu 1 284 -25 2146 136 17 75 chr4 178667422 178667657 -5621005 + MLT1B LTR MaLR 188 390 0 2211 116 0 0 chr4 178667719 178668012 -5620650 + AluSg SINE Alu 1 293 -17 760 163 39 0 chr4 178668117 178668246 -5620416 + AluJo SINE Alu 2 135 -177 444 296 99 17 chr4 178668247 178668658 -5620004 + L1MEc LINE L1 1196 1650 -857 21 0 0 0 chr4 178668947 178668968 -5619694 + AT_rich Low_complexity Low_complexity 1 21 0 327 370 59 34 chr4 178669113 178669467 -5619195 + L1MC4 LINE L1 398 760 -5359 915 240 46 62 chr4 178669474 178669875 -5618787 - LTR16B LTR ERVL -13 451 2 447 305 70 35 chr4 178670001 178670260 -5618402 - HERVL LTR ERVL -327 5327 5060 442 351 32 5 chr4 178670466 178670654 -5618008 - HERV16 LTR ERVL -4800 196 4 910 264 41 34 chr4 178670657 178670952 -5617710 - LTR16B LTR ERVL 0 464 168 784 159 0 0 chr4 178670953 178671079 -5617583 + AluJo SINE Alu 5 130 -172 2190 121 139 16 chr4 178671098 178671479 -5617183 - MSTA LTR MaLR 0 428 1 565 204 183 14 chr4 178671479 178671621 -5617041 + AluJo SINE Alu 137 302 0 1814 168 30 3 chr4 178671708 178671823 -5616839 + AluJo SINE Alu 1 112 -200 255 31 0 0 chr4 178671823 178671855 -5616807 + (CA)n Simple_repeat Simple_repeat 1 32 0 1814 168 30 3 chr4 178671855 178672043 -5616619 + AluJo SINE Alu 112 312 0 705 268 88 62 chr4 178672059 178672878 -5615784 + L1MC4 LINE L1 879 1737 -4573 444 225 8 92 chr4 178672927 178673047 -5615615 + L1MC4 LINE L1 5519 5628 -2163 2047 140 3 13 chr4 178673883 178674197 -5614465 - AluSx SINE Alu 0 312 2 563 269 44 87 chr4 178674612 178674862 -5613800 + L1MC4 LINE L1 7258 7517 -508 1635 155 52 14 chr4 178674862 178675152 -5613510 + AluJo SINE Alu 1 301 -11 563 269 44 87 chr4 178675152 178675210 -5613452 + L1MC4 LINE L1 7517 7576 -449 1774 126 108 0 chr4 178675210 178675488 -5613174 - AluSx SINE Alu -4 308 1 563 269 44 87 chr4 178675488 178675838 -5612824 + L1MC4 LINE L1 7576 8008 -17 21 36 0 0 chr4 178675841 178675869 -5612793 + AT_rich Low_complexity Low_complexity 1 28 0 1886 169 0 3 chr4 178676014 178676309 -5612353 - AluJb SINE Alu -17 295 2 889 323 71 21 chr4 178676326 178676839 -5611823 + HERVL LTR ERVL 2144 2720 -3004 1455 161 6 108 chr4 178677358 178677539 -5611123 - AluJo SINE Alu -1 301 168 2063 126 7 3 chr4 178677539 178677833 -5610829 - AluSx SINE Alu -16 296 2 1455 161 6 108 chr4 178677833 178677986 -5610676 - AluJo SINE Alu -134 168 1 2361 98 0 0 chr4 178679334 178679630 -5609032 - AluSx SINE Alu -16 296 1 201 313 88 12 chr4 178681248 178681328 -5607334 - L2 LINE L2 -1 3271 3186 3393 182 28 8 chr4 178681371 178681981 -5606681 + Tigger7 DNA MER2_type 11 632 -101 2252 102 3 3 chr4 178682120 178682413 -5606249 - AluSx SINE Alu -19 293 1 1376 143 13 10 chr4 178682488 178682752 -5605910 + Tigger3(Golem) DNA MER2_type 7 2935 -94 * 3088 167 0 4 chr4 178682744 178683241 -5605421 + Tigger7 DNA MER2_type 603 1097 -1390 229 0 0 0 chr4 178683242 178683272 -5605390 + L1MA3 LINE L1 6276 6305 0 7791 139 26 64 chr4 178683301 178684744 -5603918 + Tigger7 DNA MER2_type 1099 2487 0 612 233 50 74 chr4 178684983 178685241 -5603421 - MIR SINE MIR 0 262 11 598 245 20 69 chr4 178685347 178685394 -5603268 + MIR SINE MIR 42 90 -172 2211 113 0 0 chr4 178685394 178685711 -5602951 + AluSx SINE Alu 1 317 0 598 245 20 69 chr4 178685711 178685866 -5602796 + MIR SINE MIR 90 235 -27 2072 79 7 10 chr4 178736808 178737098 -5551564 - AluSp SINE Alu -23 290 2 2225 91 0 0 chr4 178737527 178737814 -5550848 + AluSx SINE Alu 1 287 -25 21 0 0 0 chr4 178738657 178738678 -5549984 + GC_rich Low_complexity Low_complexity 1 21 0 2093 103 6 35 chr4 178739297 178739616 -5549046 - AluSx SINE Alu -2 310 1 25 0 0 0 chr4 178739895 178739920 -5548742 + AT_rich Low_complexity Low_complexity 1 25 0 994 119 10 72 chr4 178740053 178740246 -5548416 - AluJo SINE Alu -12 300 120 832 147 7 0 chr4 178740254 178740390 -5548272 - FLAM_C SINE Alu -1 142 6 366 344 76 63 chr4 178742130 178742304 -5546358 - L3 LINE CR1 -8 1569 1387 1640 119 78 34 chr4 178742304 178742601 -5546061 - AluSx SINE Alu 0 309 1 366 344 76 63 chr4 178742601 178742742 -5545920 - L3 LINE CR1 -190 1387 1249 185 240 20 20 chr4 178742821 178742871 -5545791 - L3 LINE CR1 -664 913 864 229 280 130 29 chr4 178742895 178743245 -5545417 - L1ME3A LINE L1 -74 6096 5678 1038 72 0 0 chr4 178743382 178743520 -5545142 + AluY SINE Alu 161 298 -13 334 262 79 40 chr4 178743789 178743915 -5544747 - Charlie8 DNA MER1_type -2286 131 1 205 297 188 0 chr4 178744099 178744227 -5544435 - MIR SINE MIR -51 211 60 249 274 186 34 chr4 178744693 178744897 -5543765 - MLT1L LTR MaLR -215 400 166 820 154 7 0 chr4 178745141 178745277 -5543385 + FLAM_C SINE Alu 6 142 -1 849 125 0 83 chr4 178745285 178745453 -5543209 + AluJo SINE Alu 120 273 -39 239 213 0 21 chr4 178745879 178745926 -5542736 + polypyrimidine Low_complexity Low_complexity 3 48 0 2016 139 0 0 chr4 178746957 178747260 -5541402 + AluJo SINE Alu 1 303 -9 199 291 132 8 chr4 178747329 178747462 -5541200 + MIR SINE MIR 25 173 -60 448 357 25 38 chr4 178747474 178747712 -5540950 - L2 LINE L2 -2 3270 3036 194 105 26 0 chr4 178747785 178747823 -5540839 + G-rich Low_complexity Low_complexity 4 42 0 337 222 141 30 chr4 178748235 178748370 -5540292 + MLT1F1 LTR MaLR 371 520 -47 2333 82 3 0 chr4 178748876 178749179 -5539483 + AluSx SINE Alu 1 304 -8 4738 180 24 9 chr4 178749203 178750248 -5538414 - L1MB8 LINE L1 -6 6172 5110 23 33 0 0 chr4 178750306 178750336 -5538326 + AT_rich Low_complexity Low_complexity 1 30 0 351 304 90 48 chr4 178750580 178750915 -5537747 + L1MC4a LINE L1 5582 5930 -1878 1992 97 38 0 chr4 178750939 178751229 -5537433 - AluSx SINE Alu -11 301 1 206 177 113 3 chr4 178751484 178751553 -5537109 - MIR SINE MIR -63 145 66 384 237 17 42 chr4 178752006 178752124 -5536538 + L1MA5 LINE L1 5860 5974 -326 876 244 3 10 chr4 178753286 178753533 -5535129 + L1MB8 LINE L1 5651 5885 -299 474 186 24 114 chr4 178753501 178753613 -5535049 + L1M4 LINE L1 3271 3365 -2781 * 1940 126 0 41 chr4 178753613 178753931 -5534731 - AluSx SINE Alu -7 305 1 474 186 24 114 chr4 178753931 178753985 -5534677 + L1M4 LINE L1 3365 3422 -2724 1618 187 0 3 chr4 178754417 178754716 -5533946 + AluJb SINE Alu 1 298 -14 1438 225 45 47 chr4 178755642 178756024 -5532638 + MLT1B LTR MaLR 2 382 -8 2033 116 10 0 chr4 178756082 178756375 -5532287 + AluSx SINE Alu 1 296 -16 1331 140 69 111 chr4 178756377 178756755 -5531907 + MLT1A1 LTR MaLR 1 362 -3 3093 249 83 20 chr4 178757064 178757543 -5531119 - MER69 DNA AcHobo -1527 999 552 3825 138 34 11 chr4 178757543 178758164 -5530498 - MER41B LTR ERV1 0 635 1 3093 249 83 20 chr4 178758164 178758624 -5530038 - MER69 DNA AcHobo -1974 552 1 2437 166 22 84 chr4 178759076 178759625 -5529037 - MLT2B2 LTR ERVL 0 515 1 2234 85 0 7 chr4 178759931 178760236 -5528426 + AluY SINE Alu 1 303 -8 630 283 164 35 chr4 178764014 178764332 -5524330 - L2 LINE L2 0 3313 2955 1980 118 3 0 chr4 178764512 178764800 -5523862 + AluSx SINE Alu 4 292 -20 296 212 3 32 chr4 178766061 178766138 -5522524 + MER5B DNA MER1_type 113 177 -1 377 273 83 8 chr4 178767869 178768001 -5520661 + L2 LINE L2 2920 3061 -252 2179 100 3 0 chr4 178768342 178768653 -5520009 - AluSx SINE Alu 0 312 1 521 313 98 88 chr4 178768725 178769166 -5519496 - L2 LINE L2 -1 3271 2827 920 319 114 6 chr4 178769361 178769859 -5518803 - L2 LINE L2 -774 2540 1989 872 101 0 7 chr4 178770444 178770583 -5518079 + (CATAA)n Simple_repeat Simple_repeat 5 142 0 337 314 37 26 chr4 178770583 178770765 -5517897 - MIR SINE MIR -7 255 69 678 157 0 95 chr4 178771061 178771208 -5517454 + FLAM_C SINE Alu 1 133 0 1173 176 25 21 chr4 178771231 178771470 -5517192 + AluJo SINE Alu 56 295 -17 315 178 41 27 chr4 178771559 178771632 -5517030 + L1M4 LINE L1 5325 5398 -748 468 0 0 0 chr4 178771633 178771685 -5516977 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 1690 138 45 0 chr4 178771685 178771954 -5516708 - AluSx SINE Alu -31 281 1 502 309 0 0 chr4 178771984 178772123 -5516539 - L1MC4 LINE L1 -1433 6609 6471 2024 117 0 0 chr4 178772406 178772721 -5515941 + AluSg SINE Alu 1 315 0 428 266 101 6 chr4 178772730 178772888 -5515774 - L1ME LINE L1 -486 5635 5463 317 290 130 19 chr4 178773519 178773681 -5514981 - MIR SINE MIR -58 204 25 1764 103 0 4 chr4 178774574 178774816 -5513846 - AluSx SINE Alu -14 298 58 523 120 0 0 chr4 178774828 178774903 -5513759 - AluSx SINE Alu -238 75 1 466 263 43 59 chr4 178776729 178776945 -5511717 - MIR SINE MIR -50 212 6 2177 139 14 3 chr4 178778531 178778875 -5509787 + MER7A DNA MER2_type 1 346 0 258 105 0 0 chr4 178780882 178780920 -5507742 + (TG)n Simple_repeat Simple_repeat 2 39 0 399 264 86 43 chr4 178780984 178781147 -5507515 + MIR SINE MIR 91 260 -2 750 164 164 7 chr4 178781741 178781887 -5506775 + AluJb SINE Alu 128 296 -16 475 242 66 60 chr4 178787292 178787474 -5501188 - MIR SINE MIR -27 235 53 459 260 128 32 chr4 178789094 178789313 -5499349 + L3 LINE CR1 1329 1568 -9 2234 97 3 3 chr4 178789338 178789636 -5499026 + AluSg SINE Alu 1 298 -12 590 133 20 10 chr4 178789669 178789767 -5498895 - AluS SINE Alu -214 99 1 423 193 324 21 chr4 178789777 178789922 -5498740 - MLT1G1 LTR MaLR -67 528 340 808 116 54 0 chr4 178790486 178790615 -5498047 - AluSp/q SINE Alu -2 311 176 344 210 167 29 chr4 178791036 178791174 -5497488 + L1ME4a LINE L1 5965 6121 0 580 252 44 18 chr4 178791234 178791458 -5497204 - MIR SINE MIR 0 262 33 2330 106 48 31 chr4 178791458 178791816 -5496846 + THE1B LTR MaLR 1 364 0 740 171 70 38 chr4 178791953 178792111 -5496551 + MER63A DNA MER1_type 6 168 -42 1596 180 27 48 chr4 178792133 178792368 -5496294 - MER7A DNA MER2_type -2710 328 103 2484 96 0 6 chr4 178792368 178792682 -5495980 + AluSx SINE Alu 1 312 0 1596 180 27 48 chr4 178792682 178792780 -5495882 - MER7A DNA MER2_type -2935 103 4 929 185 147 0 chr4 178792782 178792993 -5495669 + MER63 DNA MER1_type 816 1057 -4 2025 160 16 85 chr4 178794298 178794371 -5494291 - MSTD LTR MaLR -1 395 319 710 136 0 0 chr4 178794371 178794474 -5494188 + U13 snRNA snRNA 1 103 -1 2025 160 16 85 chr4 178794474 178794824 -5493838 - MSTD LTR MaLR -77 319 1 527 278 139 17 chr4 178794834 178795064 -5493598 - MIR SINE MIR 0 262 5 378 271 59 0 chr4 178796210 178796328 -5492334 - L2 LINE L2 -3 3310 3186 459 266 131 15 chr4 178797229 178797428 -5491234 + MIR SINE MIR 29 250 -12 917 151 6 0 chr4 178798002 178798168 -5490494 + (TCCA)n Simple_repeat Simple_repeat 4 170 0 1750 211 68 25 chr4 178798591 178799078 -5489584 - Charlie4a DNA MER1_type 0 508 1 340 262 19 19 chr4 178799193 178799296 -5489366 + L2 LINE L2 3170 3272 0 252 313 161 5 chr4 178801460 178801652 -5487010 - L2 LINE L2 -161 3111 2890 1821 151 3 10 chr4 178803176 178803467 -5485195 + AluJo SINE Alu 1 289 -23 4051 174 41 79 chr4 178803854 178804767 -5483895 - L1MB8 LINE L1 -6 6241 5294 2316 90 7 0 chr4 178804767 178805057 -5483605 - AluSp SINE Alu -21 292 1 4051 174 41 79 chr4 178805057 178805915 -5482747 - L1MB8 LINE L1 -953 5294 4520 497 231 0 0 chr4 178805915 178806019 -5482643 - U13 snRNA snRNA 0 104 1 4051 174 41 79 chr4 178806019 178806101 -5482561 - L1MB8 LINE L1 -1727 4520 4436 439 199 16 0 chr4 178806123 178806213 -5482449 + L1M4 LINE L1 3760 3852 -2294 1574 157 4 21 chr4 178806278 178806559 -5482103 - L1MA6 LINE L1 -45 6255 5980 3457 211 94 7 chr4 178806559 178807438 -5481224 - L1MB8 LINE L1 -1763 4452 3497 1402 244 105 36 chr4 178807425 178808427 -5480235 - L1MB8 LINE L1 -3668 2547 1616 * 225 0 0 0 chr4 178808427 178808452 -5480210 + (TTA)n Simple_repeat Simple_repeat 3 27 0 17250 33 3 0 chr4 178808452 178811242 -5477420 - L1PA2 LINE L1 -18 6137 3341 1402 244 105 36 chr4 178811242 178811353 -5477309 - L1MB8 LINE L1 -4598 1617 1362 225 0 0 0 chr4 178811684 178811709 -5476953 + (T)n Simple_repeat Simple_repeat 1 25 0 243 181 17 147 chr4 178812013 178812129 -5476533 - L1ME LINE L1 -5925 145 45 207 191 0 0 chr4 178812281 178812328 -5476334 + GA-rich Low_complexity Low_complexity 1 47 0 2301 98 0 22 chr4 178812780 178813097 -5475565 - AluSg SINE Alu 0 310 1 533 312 57 4 chr4 178813147 178813426 -5475236 + L2 LINE L2 1597 1890 -1424 496 243 14 27 chr4 178813523 178813671 -5474991 + MLT1C LTR MaLR 1 146 -321 835 165 0 0 chr4 178814055 178814188 -5474474 - FLAM_C SINE Alu 0 133 1 1413 125 0 0 chr4 178814251 178814435 -5474227 - AluSx SINE Alu -82 230 47 2202 110 3 3 chr4 178814887 178815177 -5473485 + AluSx SINE Alu 1 290 -22 870 196 232 59 chr4 178815189 178815581 -5473081 - MLT1D LTR MaLR -45 460 1 1941 159 7 7 chr4 178815765 178816066 -5472596 + AluJb SINE Alu 1 301 -11 2058 119 18 0 chr4 178816074 178816376 -5472286 + AluSx SINE Alu 1 307 0 226 262 49 0 chr4 178817347 178817408 -5471254 + CT-rich Low_complexity Low_complexity 5 68 0 28 48 0 0 chr4 178817618 178817660 -5471002 + AT_rich Low_complexity Low_complexity 1 42 0 323 288 27 36 chr4 178817711 178817822 -5470840 - L1ME LINE L1 -517 5604 5495 665 199 23 0 chr4 178818986 178819162 -5469500 + CT-rich Low_complexity Low_complexity 1 180 0 180 77 0 0 chr4 178819729 178819755 -5468907 + (CCCCG)n Simple_repeat Simple_repeat 2 27 0 433 265 23 30 chr4 178819897 178820089 -5468573 + MIR SINE MIR 29 218 -44 931 219 0 24 chr4 178822602 178822812 -5465850 - MER63A DNA MER1_type 0 210 6 906 259 41 41 chr4 178823798 178824161 -5464501 - MLT1I LTR MaLR -7 402 40 2284 101 0 10 chr4 178825063 178825359 -5463303 + AluSg1 SINE Alu 1 293 -16 208 246 33 0 chr4 178826019 178826080 -5462582 - L2 LINE L2 -213 3059 2997 1449 163 0 41 chr4 178826777 178827022 -5461640 + AluJo SINE Alu 46 280 -32 29 0 0 0 chr4 178827033 178827062 -5461600 + AT_rich Low_complexity Low_complexity 1 29 0 207 114 0 0 chr4 178827063 178827098 -5461564 + (CA)n Simple_repeat Simple_repeat 1 35 0 883 233 105 18 chr4 178827098 178827317 -5461345 + AluJo SINE Alu 29 266 -46 1294 255 101 72 chr4 178827407 178827772 -5460890 + L1M4 LINE L1 3437 3790 -2356 2069 136 3 13 chr4 178827772 178828082 -5460580 - AluSx SINE Alu -4 308 2 1294 255 101 72 chr4 178828082 178828775 -5459887 + L1M4 LINE L1 3790 4526 -1620 241 204 0 0 chr4 178828780 178828829 -5459833 - MER58A DNA MER1_type 0 224 176 568 196 301 0 chr4 178828880 178829023 -5459639 - MER58A DNA MER1_type -38 186 1 281 290 138 19 chr4 178829030 178829299 -5459363 + L1M4 LINE L1 4531 4831 -1315 2457 63 0 3 chr4 178831480 178831780 -5456882 + AluY SINE Alu 1 299 -12 1791 161 20 30 chr4 178831797 178832101 -5456561 - AluJb SINE Alu -11 301 1 2251 120 0 0 chr4 178832239 178832538 -5456124 - AluSq SINE Alu -14 299 1 507 33 0 0 chr4 178834555 178834616 -5454046 + (TG)n Simple_repeat Simple_repeat 2 62 0 25 0 0 0 chr4 178835378 178835403 -5453259 + AT_rich Low_complexity Low_complexity 1 25 0 1978 93 19 0 chr4 178835809 178836067 -5452595 + AluSg SINE Alu 41 303 -7 878 241 42 21 chr4 178837342 178837583 -5451079 - MIR SINE MIR 0 262 17 457 167 96 196 chr4 178837901 178838182 -5450480 + MER112 DNA MER1_type 3 255 -5 618 34 16 90 chr4 178838292 178838614 -5450048 + (TA)n Simple_repeat Simple_repeat 1 298 0 247 212 61 15 chr4 178839018 178839084 -5449578 + MIR3 SINE MIR 113 181 -27 199 311 0 0 chr4 178841859 178841920 -5446742 + MIR SINE MIR 74 134 -128 1581 143 17 49 chr4 178843709 178843996 -5444666 - AluJo SINE Alu -34 278 1 207 69 0 0 chr4 178846177 178846206 -5442456 + (TTG)n Simple_repeat Simple_repeat 2 30 0 22 0 0 0 chr4 178846353 178846375 -5442287 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr4 178846773 178846800 -5441862 + AT_rich Low_complexity Low_complexity 1 27 0 1765 111 3 87 chr4 178847369 178847462 -5441200 + MER46B DNA MER2_type 58 4294967277 -2750 2464 89 0 3 chr4 178847462 178847775 -5440887 + AluSx SINE Alu 1 312 0 1765 111 3 87 chr4 178847775 178848013 -5440649 + MER46B DNA MER2_type -20 236 0 413 86 0 0 chr4 178848743 178848801 -5439861 + L1MA3 LINE L1 6248 6305 0 1880 163 3 0 chr4 178848890 178849179 -5439483 + AluJb SINE Alu 1 290 -22 205 371 0 0 chr4 178849258 178849320 -5439342 + MIR3 SINE MIR 7 68 -140 640 240 154 29 chr4 178850292 178850467 -5438195 - MLT2D LTR ERVL -263 151 5 1287 278 106 38 chr4 178850511 178850958 -5437704 + L1MDb LINE L1 1116 1531 -4875 1606 179 31 14 chr4 178850958 178851248 -5437414 + AluJo SINE Alu 11 305 -7 2621 131 36 17 chr4 178851254 178851674 -5436988 - MSTA LTR MaLR 0 428 1 1287 278 106 38 chr4 178851674 178852089 -5436573 + L1MDb LINE L1 1535 2037 -4369 2342 216 58 33 chr4 178852428 178853118 -5435544 - L1M4 LINE L1 -1930 4216 3510 1287 167 23 0 chr4 178853124 178853340 -5435322 - AluJo SINE Alu 0 312 92 183 80 0 0 chr4 178853444 178853469 -5435193 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 2028 155 87 39 chr4 178853884 178854322 -5434340 - LTR2B LTR ERV1 0 490 32 3462 114 6 6 chr4 178854341 178854842 -5433820 - MER9 LTR ERVK -10 501 1 2256 105 0 0 chr4 178855345 178855631 -5433031 + AluY SINE Alu 9 294 -17 813 126 196 0 chr4 178855645 178855788 -5432874 + MER21B LTR ERV1 322 492 -371 451 225 158 17 chr4 178856016 178856136 -5432526 + MLT1A1 LTR MaLR 178 314 -51 551 182 0 0 chr4 178856202 178856290 -5432372 + AluJ/FLAM SINE Alu 2 89 -223 2265 116 0 6 chr4 178858295 178858606 -5430056 - AluSg SINE Alu -1 309 1 2947 3 0 0 chr4 178858621 178858930 -5429732 - AluYa5 SINE Alu -2 309 1 189 273 106 0 chr4 178859365 178859431 -5429231 - L2 LINE L2 -31 3241 3169 6761 157 83 146 chr4 178859583 178861456 -5427206 + MER52A LTR ERV1 1 1755 0 704 106 0 19 chr4 178861533 178861637 -5427025 - L1PA13 LINE L1 -366 5799 5698 2377 126 6 0 chr4 178861637 178861982 -5426680 + L1PA13 LINE L1 5797 6163 0 2115 128 3 25 chr4 178861987 178862306 -5426356 + AluSx SINE Alu 1 312 0 216 322 33 16 chr4 178862561 178862682 -5425980 - MIR SINE MIR -93 169 47 2093 95 3 109 chr4 178862795 178863143 -5425519 - AluSp SINE Alu 0 313 3 255 61 0 0 chr4 178864322 178864355 -5424307 + (GCCTG)n Simple_repeat Simple_repeat 5 37 0 386 275 82 29 chr4 178864961 178865132 -5423530 + MER20B DNA MER1_type 1 180 -603 1905 124 6 48 chr4 178865711 178866025 -5422637 + AluSx SINE Alu 1 301 -11 23 0 0 0 chr4 178866317 178866340 -5422322 + AT_rich Low_complexity Low_complexity 1 23 0 1682 187 7 0 chr4 178866340 178866624 -5422038 - AluJb SINE Alu -26 286 1 182 290 29 14 chr4 178866670 178866739 -5421923 - L3 LINE CR1 -571 1006 937 402 208 0 0 chr4 178866915 178866992 -5421670 + Tigger5 DNA MER2_type 2242 2318 -5 * 509 165 13 0 chr4 178866991 178867070 -5421592 - Tigger5 DNA MER2_type -2243 80 1 220 51 26 26 chr4 178867161 178867200 -5421462 + (TTCC)n Simple_repeat Simple_repeat 3 41 0 2293 127 38 14 chr4 178867426 178867795 -5420867 + MER83B LTR ERV1 1 378 0 2311 98 0 22 chr4 178869376 178869693 -5418969 - AluSg SINE Alu 0 310 1 441 228 10 10 chr4 178869693 178869794 -5418868 - L2 LINE L2 -10 3303 3203 523 246 107 37 chr4 178870080 178870295 -5418367 + MIR SINE MIR 32 261 -1 704 204 67 82 chr4 178871587 178871857 -5416805 - MER102b DNA MER1_type -32 309 44 2130 103 40 10 chr4 178871937 178872237 -5416425 - AluSx SINE Alu -3 309 1 189 0 0 0 chr4 178873533 178873554 -5415108 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1108 53 0 0 chr4 178873556 178873687 -5414975 - AluSc SINE Alu -18 291 161 506 103 0 0 chr4 178874238 178874306 -5414356 + FLAM SINE Alu 50 117 -26 204 125 0 0 chr4 178874337 178874369 -5414293 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 1184 190 128 45 chr4 178874928 178875265 -5413397 - MLT1A1 LTR MaLR 0 365 1 649 266 85 54 chr4 178877648 178878129 -5410533 - L1ME4a LINE L1 -2 6119 5624 2124 124 17 7 chr4 178878712 178879011 -5409651 + AluSx SINE Alu 1 302 -10 11346 191 88 31 chr4 178879972 178882504 -5406158 + L1MC1 LINE L1 16 2403 -4023 304 73 0 0 chr4 178882504 178882545 -5406117 - AluSx SINE Alu -7 293 253 1708 99 0 0 chr4 178882545 178882757 -5405905 - AluSx SINE Alu -100 212 1 11346 191 88 31 chr4 178882757 178883248 -5405414 + L1MC1 LINE L1 2402 3256 -3170 6061 194 71 23 chr4 178883287 178884496 -5404166 + L1MC1 LINE L1 3828 4978 -1635 1583 128 60 123 chr4 178884496 178884862 -5403800 + MER2 DNA MER2_type 1 343 -1 6061 194 71 23 chr4 178884862 178886312 -5402350 + L1MC1 LINE L1 4978 6608 -5 25 51 0 0 chr4 178886344 178886383 -5402279 + AT_rich Low_complexity Low_complexity 1 39 0 1522 174 8 15 chr4 178886432 178886696 -5401966 - AluJo SINE Alu -11 301 40 300 219 0 0 chr4 178886700 178886764 -5401898 + L2 LINE L2 3217 3280 -33 765 261 58 10 chr4 178886822 178887029 -5401633 - MIR SINE MIR -31 231 15 1044 243 171 0 chr4 178887173 178887507 -5401155 + L1ME3A LINE L1 5739 6129 -41 2514 50 10 3 chr4 178887509 178887806 -5400856 - AluY SINE Alu -11 300 2 411 296 28 0 chr4 178890491 178890633 -5398029 - Charlie8 DNA MER1_type -2203 214 69 182 307 158 9 chr4 178890857 178890971 -5397691 + L2 LINE L2 3142 3272 0 24 32 0 0 chr4 178894010 178894041 -5394621 + AT_rich Low_complexity Low_complexity 1 31 0 495 128 0 0 chr4 178899185 178899271 -5389391 + L1MB1 LINE L1 4385 4470 -1676 1274 111 32 0 chr4 178899279 178899468 -5389194 - MER30 DNA MER1_type -35 195 1 2525 129 73 27 chr4 178899468 178899723 -5388939 + L1MB1 LINE L1 4461 4703 -1443 2968 117 5 0 chr4 178899723 178900151 -5388511 + MER57B LTR ERV1 1 430 -4 2525 129 73 27 chr4 178900151 178900415 -5388247 + L1MB1 LINE L1 4703 5004 -1142 22 0 0 0 chr4 178900558 178900580 -5388082 + AT_rich Low_complexity Low_complexity 1 22 0 2506 146 54 6 chr4 178900596 178901062 -5387600 + L1MB1 LINE L1 5670 6157 -11 401 259 87 49 chr4 178901633 178901816 -5386846 - MIR SINE MIR -19 243 48 2199 101 10 3 chr4 178902960 178903267 -5385395 + AluSq SINE Alu 1 309 -4 2514 200 36 31 chr4 178903281 178903468 -5385194 + L1MB8 LINE L1 5593 5778 -400 2227 124 0 0 chr4 178903468 178903767 -5384895 + AluSx SINE Alu 1 299 -13 2514 200 36 31 chr4 178903767 178904159 -5384503 + L1MB8 LINE L1 5778 6175 -3 278 330 165 20 chr4 178904392 178904592 -5384070 + L2 LINE L2 2850 3078 -235 684 176 59 0 chr4 178904595 178904714 -5383948 + FLAM_A SINE Alu 2 127 -6 337 279 111 62 chr4 178904808 178904849 -5383813 - L1M4 LINE L1 -2198 3948 3910 2360 110 0 0 chr4 178904849 178905157 -5383505 + AluSx SINE Alu 4 311 -1 337 279 111 62 chr4 178905157 178905359 -5383303 - L1M4 LINE L1 -2236 3910 3693 528 241 160 26 chr4 178905441 178905724 -5382938 - L1M4 LINE L1 -2679 3467 3109 2159 114 3 14 chr4 178905724 178906021 -5382641 - AluSq SINE Alu -19 294 1 528 241 160 26 chr4 178906021 178906156 -5382506 - L1M4 LINE L1 -3037 3109 2993 * 1566 189 19 102 chr4 178906154 178906289 -5382373 - L1MD3 LINE L1 -150 7845 7700 1631 195 3 7 chr4 178906289 178906591 -5382071 + AluJb SINE Alu 1 301 -11 1566 189 19 102 chr4 178906591 178906936 -5381726 - L1MD3 LINE L1 -295 7700 7405 232 298 0 0 chr4 178906936 178906993 -5381669 - MLT1F1 LTR MaLR -442 125 69 441 202 59 8 chr4 178906995 178907114 -5381548 - L1MD3 LINE L1 -678 7317 7193 964 265 83 32 chr4 178907196 178907570 -5381092 - L1ME3A LINE L1 -16 6137 5745 459 220 33 0 chr4 178907688 178907803 -5380859 - L1ME3A LINE L1 -622 5527 5411 276 272 12 0 chr4 178907848 178907929 -5380733 - L1ME3A LINE L1 -3376 2753 2672 271 237 193 18 chr4 178908027 178908141 -5380521 - L1ME3A LINE L1 -3545 2584 2451 484 281 35 11 chr4 178908258 178908532 -5380130 - L1ME3A LINE L1 -3819 2310 2032 309 234 23 0 chr4 178908565 178908676 -5379986 - L1MEc LINE L1 -861 1629 1404 312 338 56 10 chr4 178908763 178908961 -5379701 - L1MEc LINE L1 -5158 961 755 238 278 68 68 chr4 178909041 178909174 -5379488 - L1MEc LINE L1 -5476 643 511 254 221 206 20 chr4 178909805 178910058 -5378604 - L1M4 LINE L1 -2989 3157 2858 1647 164 4 7 chr4 178910061 178910330 -5378332 + AluJb SINE Alu 44 311 -1 384 258 25 42 chr4 178910547 178910667 -5377995 + L2 LINE L2 3160 3277 -36 328 272 25 0 chr4 178910667 178910748 -5377914 + L2 LINE L2 3230 3312 -1 1286 246 112 74 chr4 178911235 178911555 -5377107 + L1MC5 LINE L1 6663 6969 -992 2217 129 0 0 chr4 178911555 178911865 -5376797 + AluSx SINE Alu 1 310 -2 1286 246 112 74 chr4 178911865 178912326 -5376336 + L1MC5 LINE L1 6969 7411 -550 180 0 0 0 chr4 178912326 178912346 -5376316 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1286 246 112 74 chr4 178912346 178912384 -5376278 + L1MC5 LINE L1 7411 7446 -515 2030 117 0 46 chr4 178912384 178912710 -5375952 + AluSq SINE Alu 1 311 -2 1286 246 112 74 chr4 178912710 178912976 -5375686 + L1MC5 LINE L1 7446 7791 -170 252 196 0 0 chr4 178913005 178913056 -5375606 + L1MC5 LINE L1 7852 7902 -59 1776 203 12 9 chr4 178913082 178913427 -5375235 - MER7A DNA MER2_type -1 345 2 1903 133 26 26 chr4 178913430 178913732 -5374930 - AluSx SINE Alu -10 302 1 426 285 118 33 chr4 178913871 178914141 -5374521 - L1M4 LINE L1 -1632 4514 4222 328 245 191 34 chr4 178914155 178914302 -5374360 - L1ME2 LINE L1 -20 6144 5975 * 1451 217 70 6 chr4 178914271 178914643 -5374019 - L1ME1 LINE L1 -303 5932 5580 2166 245 90 21 chr4 178914649 178915562 -5373100 - L1ME1 LINE L1 -3144 3071 2089 2517 57 0 0 chr4 178915562 178915863 -5372799 - AluY SINE Alu -10 301 1 2166 245 90 21 chr4 178915863 178915899 -5372763 - L1ME1 LINE L1 -4126 2089 2057 234 256 100 67 chr4 178915899 178915989 -5372673 + MER58 DNA MER1_type 1 93 -2327 1340 248 140 28 chr4 178916053 178916516 -5372146 - MLT1E2 LTR MaLR 0 626 112 321 174 0 9 chr4 178916618 178916695 -5371967 + MER58 DNA MER1_type 2337 2411 -9 807 251 105 16 chr4 178916713 178917084 -5371578 - L1ME1 LINE L1 -4367 2029 1626 * 2048 155 98 2 chr4 178917074 178917480 -5371182 - L1MB4 LINE L1 0 6180 5736 847 246 89 87 chr4 178917502 178917893 -5370769 + MLT2B1 LTR ERVL 77 468 -52 673 189 0 0 chr4 178917904 178918039 -5370623 + L1M3 LINE L1 5567 5701 -479 * 982 134 25 40 chr4 178918036 178918238 -5370424 - L1M4 LINE L1 -676 5502 5304 * 1350 255 134 26 chr4 178918233 178918989 -5369673 - L1ME1 LINE L1 -4752 1644 808 390 259 84 21 chr4 178918987 178919130 -5369532 - L1MA10 LINE L1 -8 6326 6175 * 1404 271 104 57 chr4 178919191 178919933 -5368729 - L1ME1 LINE L1 -5583 813 37 1906 166 12 12 chr4 178921057 178921395 -5367267 + MER44D DNA MER2_type 2 609 0 2291 66 38 0 chr4 178921617 178921905 -5366757 - AluSp SINE Alu -14 299 1 24 53 0 0 chr4 178923488 178923526 -5365136 + AT_rich Low_complexity Low_complexity 1 38 0 298 276 8 67 chr4 178923888 178924022 -5364640 + L3 LINE CR1 333 458 -1119 2056 116 7 3 chr4 178924295 178924588 -5364074 + AluSg SINE Alu 1 294 -16 810 176 0 0 chr4 178925086 178925217 -5363445 - FLAM_C SINE Alu -10 133 3 536 220 148 9 chr4 178925247 178925470 -5363192 + L1M4 LINE L1 2798 3051 -3095 1081 185 16 96 chr4 178925526 178925829 -5362833 + Tigger3(Golem) DNA MER2_type 2760 3038 0 726 180 75 40 chr4 178925849 178926049 -5362613 - L1MA9 LINE L1 -38 6274 6068 2125 124 0 0 chr4 179026698 179026980 -5261682 + AluSx SINE Alu 1 282 -30 469 225 0 0 chr4 179027288 179027377 -5261285 + MER94 DNA DNA 46 134 0 323 296 66 30 chr4 179027485 179027820 -5260842 - L2 LINE L2 -639 2675 2329 282 225 0 38 chr4 179027860 179027940 -5260722 + (TA)n Simple_repeat Simple_repeat 2 78 0 252 0 0 0 chr4 179028811 179028839 -5259823 + (TTG)n Simple_repeat Simple_repeat 1 28 0 2181 94 0 0 chr4 179028843 179029119 -5259543 - AluSq SINE Alu -37 276 1 2479 70 7 0 chr4 179030258 179030557 -5258105 - AluSp SINE Alu -12 301 1 1419 128 5 23 chr4 179031339 179031558 -5257104 + AluJo SINE Alu 84 298 -14 759 177 8 8 chr4 179033547 179033677 -5254985 + FLAM_A SINE Alu 1 130 -3 1748 170 14 7 chr4 179033694 179033982 -5254680 + AluJb SINE Alu 13 302 -10 664 260 17 0 chr4 179034230 179034403 -5254259 - MIR SINE MIR 0 262 87 887 107 93 0 chr4 179034419 179034569 -5254093 + MSTB2 LTR MaLR 1 164 -293 2354 105 0 13 chr4 179034825 179035140 -5253522 + AluSx SINE Alu 1 311 -1 692 303 0 0 chr4 179035183 179035537 -5253125 + GA-rich Low_complexity Low_complexity 1 354 0 385 149 0 149 chr4 179035543 179035751 -5252911 + (GGAAA)n Simple_repeat Simple_repeat 2 178 0 * 699 294 0 4 chr4 179035612 179035858 -5252804 + GA-rich Low_complexity Low_complexity 1 244 0 253 89 0 164 chr4 179035859 179036072 -5252590 + (GGAAA)n Simple_repeat Simple_repeat 1 178 0 378 256 0 0 chr4 179036073 179036155 -5252507 + GA-rich Low_complexity Low_complexity 5 86 0 2096 125 3 0 chr4 179036641 179036928 -5251734 + AluSx SINE Alu 1 288 -24 207 0 0 0 chr4 179036931 179036954 -5251708 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 1511 266 77 37 chr4 179037246 179037818 -5250844 - MER20B DNA MER1_type 0 783 189 295 276 86 58 chr4 179038239 179038413 -5250249 + MIR SINE MIR 78 256 -6 1814 113 0 34 chr4 179039349 179039615 -5249047 + AluSq SINE Alu 55 311 -2 790 291 174 33 chr4 179040948 179041464 -5247198 + MLT1L LTR MaLR 7 595 -20 1896 281 61 36 chr4 179041704 179042472 -5246190 + L1M4 LINE L1 2 788 -5754 230 274 8 120 chr4 179042740 179042857 -5245805 + MIR SINE MIR 49 152 -110 2481 61 3 3 chr4 179042904 179043200 -5245462 - AluY SINE Alu -15 296 1 189 0 0 0 chr4 179043214 179043235 -5245427 + (TTAA)n Simple_repeat Simple_repeat 1 21 0 2394 163 19 10 chr4 179043455 179043906 -5244756 - L1M4 LINE L1 -434 5744 5290 238 277 76 8 chr4 179044239 179044358 -5244304 - MLT1J2 LTR MaLR -323 127 1 201 294 82 0 chr4 179044613 179044698 -5243964 - L2 LINE L2 -25 3247 3156 1855 195 113 31 chr4 179044858 179045137 -5243525 - L1MB2 LINE L1 -2 6169 5838 2249 124 0 0 chr4 179045137 179045435 -5243227 - AluSx SINE Alu -14 298 1 1855 195 113 31 chr4 179045435 179045607 -5243055 - L1MB2 LINE L1 -333 5838 5681 32 75 0 0 chr4 179045793 179045860 -5242802 + AT_rich Low_complexity Low_complexity 1 67 0 425 196 0 63 chr4 179045861 179046050 -5242612 + (TAAA)n Simple_repeat Simple_repeat 2 178 0 318 259 181 0 chr4 179046050 179046216 -5242446 - L1ME LINE L1 -277 5844 5649 256 210 25 0 chr4 179046667 179046748 -5241914 + (CA)n Simple_repeat Simple_repeat 2 84 0 663 176 25 0 chr4 179046749 179046868 -5241794 - MLT2D LTR ERVL -113 301 180 1033 174 0 0 chr4 179046972 179047139 -5241523 + AluJb SINE Alu 129 295 -17 570 101 1 87 chr4 179047199 179047315 -5241347 + L1PB1 LINE L1 5696 5801 -350 354 92 31 31 chr4 179047315 179047413 -5241249 + (TA)n Simple_repeat Simple_repeat 1 98 0 2391 130 3 3 chr4 179047413 179047774 -5240888 + L1PB1 LINE L1 5782 6142 -9 29 47 0 0 chr4 179047791 179047834 -5240828 + AT_rich Low_complexity Low_complexity 1 43 0 207 282 65 43 chr4 179047886 179048105 -5240557 - MIR SINE MIR -3 259 1 2605 21 0 7 chr4 179048306 179048596 -5240066 - AluY SINE Alu -23 288 1 1258 147 5 0 chr4 179049922 179050112 -5238550 + AluJb SINE Alu 37 227 -85 237 33 0 0 chr4 179050766 179050796 -5237866 + (TTTTA)n Simple_repeat Simple_repeat 3 32 0 1373 172 61 15 chr4 179050798 179051060 -5237602 - AluJo SINE Alu -31 281 8 37 52 0 0 chr4 179051249 179051307 -5237355 + AT_rich Low_complexity Low_complexity 1 58 0 2295 168 72 0 chr4 179052022 179052439 -5236223 + L1PA16 LINE L1 5717 6163 -3 7417 63 10 10 chr4 179053868 179055121 -5233541 - SVA Other Other -839 1386 250 2364 102 0 6 chr4 179055386 179055701 -5232961 - AluSq SINE Alu 0 313 1 351 250 162 7 chr4 179055874 179056022 -5232640 + MIR SINE MIR 34 204 -58 3417 124 31 0 chr4 179056027 179056535 -5232127 + MER1A DNA MER1_type 1 524 -3 1776 159 29 23 chr4 179057678 179057987 -5230675 - AluJb SINE Alu -1 311 1 975 81 16 0 chr4 179058590 179058713 -5229949 + AluSq/x SINE Alu 1 125 -188 278 85 0 21 chr4 179059190 179059237 -5229425 + (CCCCCT)n Simple_repeat Simple_repeat 2 47 0 366 217 11 33 chr4 179059263 179059447 -5229215 + (CGGGG)n Simple_repeat Simple_repeat 1 180 0 505 284 49 84 chr4 179060753 179061038 -5227624 + L2 LINE L2 3038 3312 -1 1735 193 3 0 chr4 179061613 179061909 -5226753 - AluJo SINE Alu -7 305 9 255 237 13 0 chr4 179061918 179061994 -5226668 + Charlie7 DNA MER1_type 280 356 -2256 * 555 244 29 6 chr4 179061990 179062162 -5226500 + Charlie7 DNA MER1_type 1490 1665 -947 27 0 0 0 chr4 179063330 179063357 -5225305 + AT_rich Low_complexity Low_complexity 1 27 0 264 274 134 86 chr4 179063552 179064125 -5224537 - L2 LINE L2 -831 2483 1883 10963 131 14 15 chr4 179064142 179065831 -5222831 + Tigger1 DNA MER2_type 3 1689 -729 29 28 0 0 chr4 179066109 179066145 -5222517 + AT_rich Low_complexity Low_complexity 1 36 0 664 223 0 12 chr4 179066148 179066314 -5222348 - L1MB3 LINE L1 -3 6180 6017 2090 138 3 0 chr4 179066749 179067047 -5221615 + AluSg SINE Alu 1 299 -11 196 254 48 0 chr4 179067127 179067190 -5221472 + MIR SINE MIR 196 261 -1 1253 200 98 104 chr4 179067468 179067863 -5220799 + MLT1F1 LTR MaLR 11 443 -124 2533 143 44 0 chr4 179067863 179068269 -5220393 - MSTA LTR MaLR 0 428 5 1253 200 98 104 chr4 179068269 179068394 -5220268 + MLT1F1 LTR MaLR 443 567 0 415 319 12 59 chr4 179068503 179068672 -5219990 + MIR SINE MIR 28 188 -74 2085 213 89 7 chr4 179069527 179070086 -5218576 + L1MC4 LINE L1 6737 7341 -701 420 144 133 0 chr4 179070132 179070222 -5218440 + L1MC4 LINE L1 7940 8041 -1 2228 65 36 0 chr4 179070760 179071086 -5217576 + AluSx SINE Alu 1 336 0 595 249 101 0 chr4 179071200 179071229 -5217433 + MER5A DNA MER1_type 3 28 -161 186 43 0 0 chr4 179071229 179071252 -5217410 + (CAG)n Simple_repeat Simple_repeat 1 23 0 595 249 101 0 chr4 179071252 179071391 -5217271 + MER5A DNA MER1_type 28 188 -1 24 32 0 0 chr4 179072041 179072072 -5216590 + GC_rich Low_complexity Low_complexity 1 31 0 21 82 0 0 chr4 179072215 179072264 -5216398 + GC_rich Low_complexity Low_complexity 1 49 0 24 32 0 0 chr4 179072474 179072505 -5216157 + GC_rich Low_complexity Low_complexity 1 31 0 23 114 0 0 chr4 179072958 179073072 -5215590 + GC_rich Low_complexity Low_complexity 1 114 0 3597 217 93 29 chr4 179074435 179075641 -5213021 + L1M4b LINE L1 1270 2628 -4331 249 349 38 15 chr4 179075833 179075965 -5212697 + L2 LINE L2 2711 2845 -469 239 306 58 41 chr4 179076366 179076487 -5212175 + MIR SINE MIR 89 211 -51 187 262 83 60 chr4 179076530 179076614 -5212048 + L2 LINE L2 3227 3312 -1 30 0 0 0 chr4 179076941 179076971 -5211691 + AT_rich Low_complexity Low_complexity 1 30 0 1169 200 48 4 chr4 179077684 179077914 -5210748 + MER58B DNA MER1_type 102 341 0 2335 101 0 3 chr4 179078214 179078522 -5210140 - AluSg1 SINE Alu -2 307 1 22 56 0 0 chr4 179078530 179078566 -5210096 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr4 179078822 179078843 -5209819 + AT_rich Low_complexity Low_complexity 1 21 0 936 214 32 63 chr4 179079882 179080210 -5208452 + AluJo SINE Alu 6 324 0 2042 126 11 0 chr4 179080227 179080512 -5208150 + AluJb SINE Alu 3 290 -22 237 65 0 0 chr4 179081320 179081351 -5207311 + (CA)n Simple_repeat Simple_repeat 2 32 0 875 155 35 29 chr4 179082025 179082199 -5206463 + MLT2D LTR ERVL 1 175 -239 330 147 0 0 chr4 179082914 179082982 -5205680 + (T)n Simple_repeat Simple_repeat 1 68 0 521 313 51 10 chr4 179082989 179083184 -5205478 + MIR3 SINE MIR 1 203 -5 216 0 0 0 chr4 179083452 179083476 -5205186 + (CTAAT)n Simple_repeat Simple_repeat 4 27 0 304 275 49 122 chr4 179084520 179084847 -5203815 + L1ME4a LINE L1 5801 6103 -18 314 301 60 15 chr4 179085328 179085461 -5203201 + L2 LINE L2 3173 3311 -2 1098 189 0 19 chr4 179090683 179090889 -5197773 + AluJb SINE Alu 108 309 -3 2580 56 0 0 chr4 179092019 179092322 -5196340 - AluY SINE Alu -8 303 1 1048 61 74 7 chr4 179093844 179093992 -5194670 + MER30 DNA MER1_type 1 158 -72 1717 139 7 39 chr4 179094129 179094438 -5194224 - AluJb SINE Alu -13 299 1 2092 120 0 0 chr4 179094446 179094747 -5193915 - AluSc SINE Alu -8 301 1 1249 157 14 18 chr4 179095364 179095586 -5193076 - MER31A LTR ERV1 -1 484 264 1536 177 157 9 chr4 179095586 179095761 -5192901 + MSTD LTR MaLR 1 149 -247 195 42 0 0 chr4 179095761 179095785 -5192877 + (CCCCCA)n Simple_repeat Simple_repeat 3 26 0 1536 177 157 9 chr4 179095785 179095954 -5192708 + MSTD LTR MaLR 149 396 0 1542 106 82 12 chr4 179095961 179096206 -5192456 - MER31A LTR ERV1 -223 262 1 1785 158 13 7 chr4 179096979 179097282 -5191380 - AluJo SINE Alu -7 305 1 21 0 0 0 chr4 179098028 179098049 -5190613 + AT_rich Low_complexity Low_complexity 1 21 0 1011 194 216 3 chr4 179098057 179098152 -5190510 - MER2 DNA MER2_type -1 343 269 2094 113 3 0 chr4 179098152 179098452 -5190210 + AluSx SINE Alu 1 301 -11 1011 194 216 3 chr4 179098452 179098639 -5190023 - MER2 DNA MER2_type -75 269 1 287 366 0 20 chr4 179098863 179099016 -5189646 + L1ME LINE L1 5485 5634 -487 4234 160 7 27 chr4 179099147 179100066 -5188596 - L1MB3 LINE L1 -186 5997 5096 280 239 28 14 chr4 179100153 179100224 -5188438 - L2 LINE L2 -20 3293 3222 260 211 0 19 chr4 179100228 179100280 -5188382 - L2 LINE L2 -70 3243 3193 708 294 98 24 chr4 179101188 179101679 -5186983 + L2 LINE L2 2716 3270 -2 3269 118 29 35 chr4 179101854 179102369 -5186293 - MER1A DNA MER1_type 0 529 18 22 0 0 0 chr4 179105055 179105077 -5183585 + GC_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 179106768 179106789 -5181873 + AT_rich Low_complexity Low_complexity 1 21 0 278 83 0 62 chr4 179106974 179107022 -5181640 + L1PA3 LINE L1 6108 6152 -3 618 270 16 32 chr4 179108473 179108658 -5180004 - MER5A DNA MER1_type -1 188 7 225 283 198 28 chr4 179109037 179109214 -5179448 + MIR SINE MIR 20 226 -36 717 247 123 22 chr4 179109386 179109613 -5179049 - MIR SINE MIR 0 262 13 1695 160 27 0 chr4 179109680 179109980 -5178682 + AluJo SINE Alu 5 312 0 413 268 56 20 chr4 179109980 179110178 -5178484 - L1MC5 LINE L1 -66 7895 7691 1080 146 28 0 chr4 179110188 179110366 -5178296 + FRAM SINE Alu 1 175 -1 389 193 35 76 chr4 179110387 179110532 -5178130 - L1MC5 LINE L1 -271 7690 7552 216 224 86 0 chr4 179110600 179110658 -5178004 - L2 LINE L2 -5 3308 3246 334 225 63 48 chr4 179112083 179112232 -5176430 + MLT1K LTR MaLR 433 611 -4 181 154 0 0 chr4 179112349 179112375 -5176287 - L2 LINE L2 -16 3256 3231 306 171 57 0 chr4 179114127 179114197 -5174465 + L1PB4 LINE L1 6060 6133 -23 2265 112 0 0 chr4 179114438 179114750 -5173912 - AluSq SINE Alu -1 312 1 2368 80 3 0 chr4 179114947 179115249 -5173413 - AluSx SINE Alu -9 303 1 205 205 64 39 chr4 179115336 179115414 -5173248 - L3 LINE CR1 -310 1267 1188 2624 13 3 3 chr4 179116159 179116463 -5172199 + AluYa5 SINE Alu 1 304 -7 254 364 0 0 chr4 179116530 179116607 -5172055 + MIR SINE MIR 94 170 -92 1424 173 4 4 chr4 179117021 179117270 -5171392 + AluSx SINE Alu 44 292 -20 23 0 0 0 chr4 179117655 179117678 -5170984 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr4 179118707 179118735 -5169927 + AT_rich Low_complexity Low_complexity 1 28 0 861 169 6 25 chr4 179120890 179121050 -5167612 - FRAM SINE Alu -14 162 6 771 211 6 13 chr4 179122420 179122602 -5166060 - FRAM SINE Alu 0 166 1 2078 114 3 0 chr4 179124641 179124939 -5163723 + AluSx SINE Alu 1 299 -13 440 268 21 0 chr4 179125071 179125213 -5163449 - MER103 DNA DNA -9 157 13 240 118 0 0 chr4 179126080 179126114 -5162548 + MER103 DNA DNA 53 86 -80 294 238 51 117 chr4 179126769 179126877 -5161785 + L2 LINE L2 3026 3116 -197 1887 105 60 0 chr4 179126877 179127166 -5161496 + AluSg SINE Alu 1 305 0 294 238 51 117 chr4 179127166 179127270 -5161392 + L2 LINE L2 3116 3225 -88 279 232 73 90 chr4 179127317 179127494 -5161168 + L1ME3A LINE L1 5959 6132 -38 587 293 52 26 chr4 179127562 179127791 -5160871 - MIR SINE MIR 0 262 28 330 153 0 0 chr4 179128667 179128726 -5159936 + CT-rich Low_complexity Low_complexity 2 60 0 2012 104 0 4 chr4 179128755 179129033 -5159629 - AluSc SINE Alu -13 296 20 229 239 0 0 chr4 179129252 179129298 -5159364 - L1MEd LINE L1 -6069 50 5 1995 199 69 5 chr4 179129703 179130136 -5158526 - MLT1C LTR MaLR 0 467 7 776 228 145 9 chr4 179130775 179131003 -5157659 + MIR SINE MIR 4 262 0 1651 164 6 32 chr4 179131205 179131516 -5157146 + AluJo SINE Alu 1 303 -9 377 342 88 10 chr4 179131520 179131713 -5156949 + MIR SINE MIR 18 225 -37 2016 122 0 16 chr4 179131978 179132281 -5156381 - AluSq SINE Alu -15 298 1 610 133 0 48 chr4 179134760 179134865 -5153797 - FLAM_C SINE Alu -6 137 38 2151 92 0 7 chr4 179135104 179135407 -5153255 + AluSx SINE Alu 1 301 -11 2359 51 10 0 chr4 179135642 179135935 -5152727 + AluY SINE Alu 1 296 -15 954 151 110 33 chr4 179135953 179136225 -5152437 + L1MC5 LINE L1 7617 7909 -52 611 284 6 12 chr4 179136397 179136559 -5152103 + MIR3 SINE MIR 37 197 -11 1998 113 7 10 chr4 179137745 179138037 -5150625 - AluSc SINE Alu -18 291 1 189 147 0 0 chr4 179138825 179138859 -5149803 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 287 295 114 47 chr4 179138905 179138974 -5149688 - MIR3 SINE MIR -15 193 130 2026 99 33 16 chr4 179138974 179139277 -5149385 + AluSx SINE Alu 1 308 -4 287 295 114 47 chr4 179139277 179139356 -5149306 - MIR3 SINE MIR -78 130 35 375 337 24 24 chr4 179141092 179141261 -5147401 + MIR SINE MIR 41 209 -53 1851 132 0 30 chr4 179141268 179141564 -5147098 + AluSx SINE Alu 1 287 -25 198 0 0 0 chr4 179141566 179141588 -5147074 + (CAG)n Simple_repeat Simple_repeat 1 22 0 347 200 21 32 chr4 179141922 179142017 -5146645 - MER5A DNA MER1_type -87 102 9 1147 175 48 24 chr4 179143245 179143497 -5145165 + AluJb SINE Alu 1 258 -54 369 0 0 0 chr4 179144263 179144304 -5144358 + (TA)n Simple_repeat Simple_repeat 1 41 0 2240 83 6 49 chr4 179144304 179144628 -5144034 - AluY SINE Alu -1 310 1 2367 118 19 27 chr4 179144629 179144995 -5143667 - THE1B LTR MaLR -1 363 1 484 218 0 0 chr4 179144995 179145082 -5143580 - AluJ/FLAM SINE Alu -224 88 2 305 262 119 16 chr4 179145243 179145369 -5143293 - L2 LINE L2 0 3272 3134 2203 112 6 22 chr4 179145390 179145702 -5142960 + AluSx SINE Alu 3 309 -3 495 336 50 8 chr4 179145779 179146017 -5142645 - MIR SINE MIR -3 259 12 180 0 0 0 chr4 179147322 179147342 -5141320 + (T)n Simple_repeat Simple_repeat 1 20 0 181 188 47 71 chr4 179149690 179149775 -5138887 + MIR SINE MIR 33 115 -93 304 300 77 15 chr4 179151408 179151538 -5137124 + L2 LINE L2 3133 3270 -2 2186 100 0 0 chr4 179152220 179152499 -5136163 + AluSg SINE Alu 1 279 -31 285 246 56 56 chr4 179152545 179152671 -5135991 + MER113 DNA MER1_type? 3 128 -393 1343 138 5 14 chr4 179152980 179153197 -5135465 + AluJb SINE Alu 96 310 -2 1676 237 33 7 chr4 179154218 179154670 -5133992 + MLT1C LTR MaLR 1 464 -3 665 299 62 0 chr4 179155071 179155295 -5133367 + MIR SINE MIR 4 241 -21 378 94 0 0 chr4 179155311 179155364 -5133298 - MADE1 DNA Mariner -27 53 1 210 325 42 42 chr4 179155739 179155859 -5132803 + L2 LINE L2 3136 3255 -17 543 301 39 13 chr4 179156535 179156764 -5131898 + MIR SINE MIR 28 262 0 1555 195 14 0 chr4 179158350 179158632 -5130030 - AluJo SINE Alu -24 288 3 2109 120 27 0 chr4 179158838 179159138 -5129524 - AluSx SINE Alu -4 308 1 2530 58 0 0 chr4 179161081 179161373 -5127289 - AluSg1 SINE Alu -16 293 2 3731 171 26 11 chr4 179161373 179162065 -5126597 - L1MB3 LINE L1 -31 6152 5451 386 264 93 14 chr4 179162694 179162834 -5125828 + MER5A DNA MER1_type 39 189 0 834 132 0 0 chr4 179164084 179164213 -5124449 - FLAM_C SINE Alu -4 129 1 234 240 203 29 chr4 179165152 179165290 -5123372 - MIR SINE MIR -64 198 38 2375 81 10 3 chr4 179165354 179165652 -5123010 - AluSx SINE Alu -12 300 1 447 258 88 10 chr4 179165910 179166104 -5122558 + MIR SINE MIR 11 219 -43 670 110 0 18 chr4 179167458 179167567 -5121095 + AluSc SINE Alu 203 309 0 2526 60 0 3 chr4 179168594 179168895 -5119767 - AluY SINE Alu -11 300 1 1193 146 0 0 chr4 179168898 179169069 -5119593 - AluJo/FRAM SINE Alu -13 299 129 1735 130 44 57 chr4 179169072 179169388 -5119274 - AluJo SINE Alu 0 312 1 1470 191 112 64 chr4 179270364 179270803 -5017859 + MER31B LTR ERV1 3 462 -4 457 137 24 40 chr4 179270804 179270928 -5017734 + CT-rich Low_complexity Low_complexity 1 122 0 1005 237 51 57 chr4 179271910 179272147 -5016515 - L1MC5 LINE L1 -167 7794 7557 2122 142 0 0 chr4 179272147 179272458 -5016204 + AluJb SINE Alu 1 311 -1 1005 237 51 57 chr4 179272458 179272726 -5015936 - L1MC5 LINE L1 -404 7557 7292 269 244 160 45 chr4 179272694 179272850 -5015812 - L1MC4 LINE L1 -550 7492 7319 * 1983 249 98 11 chr4 179273016 179273558 -5015104 - MLT1G1 LTR MaLR -5 590 2 264 302 10 10 chr4 179273807 179273903 -5014759 - L2 LINE L2 -38 3275 3180 1975 109 36 13 chr4 179274900 179275204 -5013458 - AluSx SINE Alu -1 311 1 364 258 58 25 chr4 179275204 179275324 -5013338 + L1ME1 LINE L1 5588 5711 -410 216 264 42 0 chr4 179275680 179275752 -5012910 - L3 LINE CR1 -5 1572 1498 1505 86 0 0 chr4 179276135 179276322 -5012340 - AluSg/x SINE Alu -10 300 114 295 330 98 0 chr4 179276491 179276664 -5011998 - MIR SINE MIR -21 241 52 851 141 0 15 chr4 179277954 179278089 -5010573 - FLAM_C SINE Alu 0 133 1 279 301 98 0 chr4 179278089 179278205 -5010457 - MIR SINE MIR -80 182 52 237 307 0 23 chr4 179278338 179278426 -5010236 - MIR SINE MIR -75 187 102 26214 167 16 20 chr4 179278949 179285162 -5003500 + L1PA10 LINE L1 241 6486 0 291 175 0 0 chr4 179285608 179285665 -5002997 + (CA)n Simple_repeat Simple_repeat 2 58 0 266 333 48 24 chr4 179285693 179285819 -5002843 + L1MEd LINE L1 563 691 -5428 816 266 91 36 chr4 179285856 179286305 -5002357 + MLT1J1 LTR MaLR 3 441 -5 361 250 80 60 chr4 179286316 179286652 -5002010 + L1MEd LINE L1 737 1079 -5040 943 219 143 48 chr4 179286680 179287059 -5001603 + MLT1C LTR MaLR 53 467 0 977 259 65 58 chr4 179287594 179288178 -5000484 + L1MC4 LINE L1 7455 8042 0 875 224 11 45 chr4 179288171 179288439 -5000223 + L1ME1 LINE L1 5764 6022 -144 * 183 337 167 11 chr4 179288439 179288703 -4999959 - L2 LINE L2 -1131 2183 1879 418 283 33 38 chr4 179288772 179288956 -4999706 + L2 LINE L2 2622 2804 -510 1146 283 103 21 chr4 179288969 179289396 -4999266 - LTR16B LTR ERVL -2 462 1 1261 254 103 13 chr4 179289405 179289853 -4998809 + L2 LINE L2 2826 3313 0 262 116 145 0 chr4 179289931 179290000 -4998662 - L2 LINE L2 -42 3271 3193 191 329 66 29 chr4 179291674 179291811 -4996851 - MIR3 SINE MIR -52 156 15 547 283 28 1 chr4 179293186 179293364 -4995298 + MIR SINE MIR 54 235 -27 396 312 7 7 chr4 179293499 179293640 -4995022 + MIR3 SINE MIR 3 143 -65 4145 190 64 47 chr4 179293667 179295654 -4993008 + L1MB7 LINE L1 4156 6183 -1 860 216 17 6 chr4 179296446 179296622 -4992040 - MER45A DNA AcHobo 0 178 1 345 123 0 0 chr4 179297011 179297068 -4991594 - L1MB4 LINE L1 0 6180 6124 2568 87 0 6 chr4 179297287 179297632 -4991030 - L1PA13 LINE L1 -3 6160 5818 314 51 0 0 chr4 179297620 179297659 -4991003 - L1MB4 LINE L1 -43 6137 6099 * 1503 136 22 11 chr4 179297632 179297905 -4990757 - L1MB3 LINE L1 -57 6126 5851 209 323 115 68 chr4 179298256 179298535 -4990127 + L2 LINE L2 2894 3185 -87 548 266 63 34 chr4 179304793 179305000 -4983662 + MLT1I LTR MaLR 195 407 -2 219 278 42 0 chr4 179305040 179305112 -4983550 - MIR SINE MIR -59 203 129 2054 117 0 23 chr4 179305126 179305433 -4983229 + AluSx SINE Alu 3 302 -10 1266 222 77 9 chr4 179305542 179305880 -4982782 + MLT1C LTR MaLR 2 362 -105 2113 171 0 0 chr4 179305992 179306326 -4982336 - MLT1B LTR MaLR -55 335 2 2066 105 3 10 chr4 179306973 179307268 -4981394 - AluSq SINE Alu -20 293 1 269 288 121 73 chr4 179307474 179307897 -4980765 - L2 LINE L2 -410 2904 2462 209 357 0 0 chr4 179308043 179308127 -4980535 - L2 LINE L2 -1455 1859 1776 2562 16 7 0 chr4 179308286 179308589 -4980073 - AluY SINE Alu -6 305 1 211 369 77 8 chr4 179309062 179309192 -4979470 + MIR SINE MIR 19 157 -105 1156 201 110 19 chr4 179309795 179310104 -4978558 - MLT1B LTR MaLR 0 390 54 43430 34 22 1 chr4 179310264 179316287 -4972375 + L1PA3 LINE L1 3 6155 0 3510 65 0 0 chr4 179316590 179317047 -4971615 + L1PA8 LINE L1 5718 6174 0 1474 171 15 0 chr4 179320895 179321159 -4967503 + AluJo SINE Alu 35 302 -10 194 256 0 0 chr4 179321161 179321204 -4967458 + MIR SINE MIR 220 262 0 35 24 0 0 chr4 179321514 179321556 -4967106 + AT_rich Low_complexity Low_complexity 1 42 0 693 143 48 4 chr4 179321645 179321886 -4966776 + GA-rich Low_complexity Low_complexity 1 251 0 1781 263 7 27 chr4 179322004 179322703 -4965959 - L1P3 LINE L1 -4647 1814 1127 1413 173 8 4 chr4 179322968 179323205 -4965457 + MLT1D LTR MaLR 268 505 0 1245 249 102 42 chr4 179323615 179324096 -4964566 + MLT1J LTR MaLR 2 511 0 594 272 40 51 chr4 179324420 179324696 -4963966 - MER46C DNA MER2_type 0 338 66 2300 93 0 0 chr4 179324877 179325187 -4963475 + AluY SINE Alu 1 310 -1 413 338 34 19 chr4 179325302 179325509 -4963153 + HAL1b LINE L1 378 587 -761 1867 246 119 26 chr4 179325569 179326183 -4962479 + L1MEc LINE L1 34 704 -5692 753 170 140 0 chr4 179326197 179326368 -4962294 - Tigger2 DNA MER2_type -2174 544 350 281 106 414 0 chr4 179327240 179327344 -4961318 - Tigger2 DNA MER2_type -2353 365 219 1379 144 4 0 chr4 179327344 179327573 -4961089 - AluSp SINE Alu -83 230 1 328 125 0 0 chr4 179327579 179327635 -4961027 - Tigger2 DNA MER2_type -2607 111 56 511 169 39 23 chr4 179327642 179327772 -4960890 + AluSc SINE Alu 2 133 -176 1966 123 0 7 chr4 179327943 179328236 -4960426 + AluSx SINE Alu 12 302 -10 22 70 0 0 chr4 179328484 179328527 -4960135 + AT_rich Low_complexity Low_complexity 1 43 0 1492 94 0 0 chr4 179329488 179329689 -4958973 - AluSx SINE Alu -111 201 1 511 295 67 57 chr4 179330755 179330869 -4957793 - MER102b DNA MER1_type -1091 337 226 1900 143 52 85 chr4 179330869 179330923 -4957739 - MSTB1 LTR MaLR 0 432 378 180 0 0 0 chr4 179330923 179330943 -4957719 + (TA)n Simple_repeat Simple_repeat 1 20 0 1900 143 52 85 chr4 179330943 179331334 -4957328 - MSTB1 LTR MaLR -54 378 2 511 295 67 57 chr4 179331334 179331411 -4957251 - MER102b DNA MER1_type -1202 226 151 2332 74 0 0 chr4 179331411 179331708 -4956954 - AluY SINE Alu -14 297 1 511 295 67 57 chr4 179331708 179331830 -4956832 - MER102b DNA MER1_type -1277 151 20 354 278 49 41 chr4 179332667 179332851 -4955811 - MIR SINE MIR -69 139 7 710 180 106 6 chr4 179332887 179333048 -4955614 + MLT1B LTR MaLR 1 177 -213 1504 189 0 40 chr4 179333049 179333371 -4955291 + AluJo SINE Alu 1 309 -3 770 146 0 49 chr4 179333376 179333561 -4955101 + (GGAGAA)n Simple_repeat Simple_repeat 3 178 0 526 245 67 85 chr4 179333568 179333850 -4954812 + MLT1B LTR MaLR 174 450 -17 823 255 47 0 chr4 179334268 179334480 -4954182 - L1MC1 LINE L1 -1 6332 6111 195 290 81 0 chr4 179334590 179334652 -4954010 - MIR SINE MIR -112 96 30 414 0 0 0 chr4 179334725 179334771 -4953891 + (CA)n Simple_repeat Simple_repeat 2 47 0 196 289 24 48 chr4 179334781 179334864 -4953798 + L2 LINE L2 3191 3271 -1 3228 132 20 70 chr4 179336687 179337329 -4951333 - MER4B LTR ERV1 0 610 1 222 341 24 0 chr4 179337487 179337569 -4951093 - L2 LINE L2 -5 3267 3184 1731 199 127 5 chr4 179337592 179337995 -4950667 - MLT1C LTR MaLR 0 467 16 404 323 35 49 chr4 179338072 179338455 -4950207 - L2 LINE L2 -187 3085 2713 203 182 0 0 chr4 179338767 179338800 -4949862 + (TTG)n Simple_repeat Simple_repeat 1 33 0 257 35 0 0 chr4 179339147 179339176 -4949486 - MER96 DNA MER1_type? -96 79 51 1221 21 0 0 chr4 179340144 179340288 -4948374 + (TCCA)n Simple_repeat Simple_repeat 3 146 0 1643 136 8 15 chr4 179340538 179340802 -4947860 + Tigger2a DNA MER2_type 1 262 -172 4723 143 56 26 chr4 179340802 179340869 -4947793 + Tigger3b DNA MER2_type 2 66 -2962 2251 100 0 16 chr4 179340869 179341042 -4947620 - AluSx SINE Alu -6 306 139 2236 41 0 0 chr4 179341042 179341308 -4947354 - AluY SINE Alu -4 307 42 2251 100 0 16 chr4 179341308 179341445 -4947217 - AluSx SINE Alu -173 139 1 4723 143 56 26 chr4 179341445 179341888 -4946774 + Tigger3b DNA MER2_type 66 494 -2534 2068 118 3 0 chr4 179341888 179342185 -4946477 - AluSp SINE Alu -15 298 1 4723 143 56 26 chr4 179342185 179342572 -4946090 + Tigger3b DNA MER2_type 494 927 -304 369 294 75 35 chr4 179342639 179342867 -4945795 - MIR SINE MIR -14 248 12 1193 194 4 22 chr4 179342871 179343098 -4945564 - MER58A DNA MER1_type -1 223 1 279 0 0 0 chr4 179343213 179343244 -4945418 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 2116 106 7 7 chr4 179343246 179343549 -4945113 + AluSg SINE Alu 1 303 -7 873 196 17 46 chr4 179343549 179343789 -4944873 - L1ME1 LINE L1 -95 6140 5908 9435 241 52 33 chr4 179343798 179348241 -4940421 - L1ME1 LINE L1 -990 5225 692 458 167 24 12 chr4 179348467 179348551 -4940111 - AluJ/FRAM SINE Alu -12 300 216 1564 159 36 7 chr4 179348469 179348746 -4939916 - AluJb SINE Alu -14 298 14 1844 137 10 0 chr4 179349216 179349509 -4939153 - AluSc SINE Alu -6 303 8 2891 134 42 2 chr4 179349816 179350270 -4938392 - MER101 LTR ERV1 -2 472 1 358 272 183 3 chr4 179350340 179350496 -4938166 - MIR SINE MIR -63 145 14 325 206 0 0 chr4 179351913 179351976 -4936686 - MER94 DNA DNA -46 88 26 4412 173 19 42 chr4 179353817 179354871 -4933791 + L1PB4 LINE L1 5103 6144 -12 297 188 62 18 chr4 179355465 179355577 -4933085 + HsTC2 DNA Tc2 1703 1819 -79 858 267 64 21 chr4 179355617 179355898 -4932764 + HsTC2 DNA Tc2 1265 1557 -341 280 256 12 47 chr4 179355903 179355989 -4932673 + LTR37B LTR ERV1 7 89 -379 1862 104 0 0 chr4 179356000 179356279 -4932383 - AluSx SINE Alu 0 311 33 293 306 27 18 chr4 179358601 179358820 -4929842 - L1ME4a LINE L1 -223 5898 5678 930 280 145 18 chr4 179359105 179359552 -4929110 - L1MC4a LINE L1 -1930 5878 5375 2236 104 0 3 chr4 179359564 179359871 -4928791 - AluSx SINE Alu -6 306 1 1383 169 39 84 chr4 179359949 179360304 -4928358 - MER44D DNA MER2_type 0 609 1 234 0 0 0 chr4 179360316 179360342 -4928320 + (TG)n Simple_repeat Simple_repeat 1 26 0 431 325 92 50 chr4 179360406 179360723 -4927939 - L1ME4a LINE L1 -2225 5583 5254 2065 129 55 67 chr4 179360877 179361310 -4927352 + MSTA LTR MaLR 1 428 0 1041 128 0 0 chr4 179361622 179361802 -4926860 + (TG)n Simple_repeat Simple_repeat 1 180 0 402 85 0 0 chr4 179361876 179361935 -4926727 + (TG)n Simple_repeat Simple_repeat 1 59 0 677 85 9 0 chr4 179361985 179362091 -4926571 + (TG)n Simple_repeat Simple_repeat 1 107 0 345 109 0 0 chr4 179362145 179362209 -4926453 + (TG)n Simple_repeat Simple_repeat 1 64 0 373 289 87 35 chr4 179362469 179362642 -4926020 + MIR SINE MIR 13 194 -68 282 275 101 9 chr4 179363437 179363546 -4925116 + MIR SINE MIR 40 158 -104 2711 213 15 4 chr4 179363585 179364120 -4924542 + MER74A LTR ERVL 6 546 -12 1458 239 33 19 chr4 179364121 179364481 -4924181 - MLT1A1 LTR MaLR 0 365 1 532 240 45 7 chr4 179364498 179364652 -4924010 + MLT1D LTR MaLR 36 195 -310 266 265 48 0 chr4 179365641 179365724 -4922938 + CT-rich Low_complexity Low_complexity 2 88 0 181 240 140 0 chr4 179366465 179366515 -4922147 + L3b LINE CR1 1417 1473 -110 1902 95 20 56 chr4 179369029 179369357 -4919305 + AluSx SINE Alu 1 312 0 347 289 70 16 chr4 179370130 179370258 -4918404 + MIR SINE MIR 125 259 -3 295 259 223 0 chr4 179370372 179370484 -4918178 + MIR SINE MIR 120 256 -6 476 262 52 77 chr4 179371638 179371871 -4916791 + LTR33A LTR ERVL 1 227 -296 616 254 27 22 chr4 179372146 179372331 -4916331 + LTR33A LTR ERVL 329 514 -9 387 0 0 0 chr4 179372673 179372716 -4915946 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 1808 137 0 14 chr4 179372716 179373001 -4915661 - AluJb SINE Alu -31 281 1 1847 139 107 73 chr4 179373001 179373439 -4915223 - LTR54B LTR ERV1 -45 453 1 773 262 101 68 chr4 179373448 179373932 -4914730 + MLT1H LTR MaLR 37 536 -13 213 178 44 0 chr4 179374057 179374102 -4914560 - MIR SINE MIR -149 113 67 2683 219 19 78 chr4 179374379 179374683 -4913979 - L1ME1 LINE L1 -6 6229 5909 2180 112 0 0 chr4 179374683 179374987 -4913675 + AluSx SINE Alu 1 304 -8 2683 219 19 78 chr4 179374987 179375427 -4913235 - L1ME1 LINE L1 -326 5909 5532 1930 112 30 10 chr4 179375427 179375732 -4912930 + AluY SINE Alu 1 311 0 2683 219 19 78 chr4 179375732 179375779 -4912883 - L1ME1 LINE L1 -703 5532 5484 4319 118 2 23 chr4 179375781 179376303 -4912359 + MER41B LTR ERV1 1 423 -134 1862 148 0 0 chr4 179376303 179376629 -4912033 - AluSx SINE Alu 0 326 1 4319 118 2 23 chr4 179376629 179376762 -4911900 + MER41B LTR ERV1 423 557 0 1903 213 59 29 chr4 179376765 179377315 -4911347 - L1ME1 LINE L1 -746 5469 4920 1068 180 42 87 chr4 179377323 179377773 -4910889 + LOR1a LTR ERV1 1 488 -9 2408 200 53 19 chr4 179377781 179378362 -4910300 - L1ME1 LINE L1 -1300 4915 4315 3361 271 51 11 chr4 179378376 179379479 -4909183 - L1ME1 LINE L1 -5182 1214 68 2120 128 36 22 chr4 179379495 179379854 -4908808 - THE1B LTR MaLR 0 364 1 1162 185 10 35 chr4 179379865 179380222 -4908440 - MER31B LTR ERV1 0 466 5 886 123 8 0 chr4 179380226 179380356 -4908306 - MER31B-int LTR ERV1 -20 4916 4786 * 3336 181 39 98 chr4 179380352 179381265 -4907397 - MER31B-int LTR ERV1 -263 4673 3814 743 45 0 0 chr4 179381295 179381383 -4907279 - L1P LINE L1 -6048 98 11 1813 207 56 26 chr4 179381392 179381518 -4907144 - MER31B-int LTR ERV1 -1127 3809 3688 2555 130 23 28 chr4 179381518 179381715 -4906947 + MSTA LTR MaLR 1 197 -231 2258 87 3 0 chr4 179381715 179382014 -4906648 + AluSp SINE Alu 1 300 -13 2555 130 23 28 chr4 179382014 179382246 -4906416 + MSTA LTR MaLR 197 428 0 1813 207 56 26 chr4 179382246 179382582 -4906080 - MER31B-int LTR ERV1 -1248 3688 3333 1149 169 155 58 chr4 179382617 179382895 -4905767 - MER31B LTR ERV1 -161 305 1 1937 96 0 4 chr4 179383493 179383763 -4904899 + AluSg SINE Alu 37 305 -5 2168 122 0 0 chr4 179384877 179385180 -4903482 - AluSx SINE Alu -9 303 1 1223 241 50 57 chr4 179386106 179386653 -4902009 - MER39 LTR ERV1 -1 706 1 382 271 107 14 chr4 179386653 179386793 -4901869 + MIR SINE MIR 100 252 -10 21 0 0 0 chr4 179386806 179386827 -4901835 + AT_rich Low_complexity Low_complexity 1 21 0 342 286 63 16 chr4 179387978 179388104 -4900558 - MIR SINE MIR -122 140 9 1960 144 3 0 chr4 179388170 179388476 -4900186 - AluSx SINE Alu -5 307 1 466 206 212 95 chr4 179388683 179389187 -4899475 - MER34B LTR ERV1 0 565 3 274 306 161 16 chr4 179389335 179389521 -4899141 - MIR SINE MIR -2 260 48 1190 176 8 45 chr4 179389526 179389770 -4898892 - MLT2D LTR ERVL 0 414 180 370 127 0 0 chr4 179389770 179389825 -4898837 - MER4A LTR ERV1 0 664 610 1267 128 0 0 chr4 179389825 179390012 -4898650 + AluSg/x SINE Alu 126 312 0 1674 120 3 25 chr4 179390012 179390320 -4898342 - MER4A LTR ERV1 -44 620 261 610 135 21 0 chr4 179390320 179390416 -4898246 - MER4A LTR ERV1 -566 98 1 * 807 225 37 0 chr4 179390416 179390590 -4898072 - MLT2D LTR ERVL -231 183 3 2058 72 4 25 chr4 179390830 179391131 -4897531 - AluY SINE Alu 0 311 16 24 0 0 0 chr4 179391427 179391451 -4897211 + AT_rich Low_complexity Low_complexity 1 24 0 1827 177 47 58 chr4 179391723 179392085 -4896577 - L1MB4 LINE L1 -1 6179 5814 2242 101 0 0 chr4 179392085 179392393 -4896269 - AluSc SINE Alu -1 308 1 1827 177 47 58 chr4 179392393 179392451 -4896211 - L1MB4 LINE L1 -366 5814 5768 2179 116 0 10 chr4 179392451 179392761 -4895901 - AluSg SINE Alu -3 307 1 1827 177 47 58 chr4 179392761 179392794 -4895868 - L1MB4 LINE L1 -412 5768 5736 2619 119 5 10 chr4 179393146 179393541 -4895121 + L1PA15 LINE L1 5773 6165 0 207 0 0 0 chr4 179393575 179393598 -4895064 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 252 0 0 0 chr4 179393597 179393625 -4895037 + (TA)n Simple_repeat Simple_repeat 1 28 0 2167 98 0 0 chr4 179393626 179393913 -4894749 - AluSc SINE Alu -22 287 1 225 238 0 0 chr4 179394022 179394123 -4894539 + G-rich Low_complexity Low_complexity 1 101 0 291 289 125 23 chr4 179395315 179395443 -4893219 - MIR SINE MIR -108 154 14 1877 105 4 0 chr4 179396151 179396417 -4892245 + AluSx SINE Alu 35 301 -11 2488 140 5 8 chr4 179397487 179397888 -4890774 + L1PA16 LINE L1 5767 6166 0 1924 191 125 2 chr4 179398266 179398715 -4889947 - MLT1D LTR MaLR 0 505 2 1808 161 0 7 chr4 179399012 179399297 -4889365 + AluJo SINE Alu 1 307 0 217 0 0 0 chr4 179399297 179399321 -4889341 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 1243 265 97 26 chr4 179399939 179400427 -4888235 + MLT1G LTR MaLR 1 500 -90 2239 108 0 7 chr4 179400427 179400712 -4887950 + AluSg SINE Alu 2 286 -24 201 39 0 0 chr4 179400712 179400738 -4887924 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 2239 108 0 7 chr4 179400738 179400749 -4887913 + AluSg SINE Alu 286 296 -14 1243 265 97 26 chr4 179400749 179400834 -4887828 + MLT1G LTR MaLR 500 578 -12 1958 152 3 3 chr4 179401045 179401347 -4887315 + AluJb SINE Alu 1 302 -10 249 33 0 0 chr4 179401658 179401688 -4886974 + (CA)n Simple_repeat Simple_repeat 2 31 0 1763 151 55 0 chr4 179402224 179402495 -4886167 + AluJb SINE Alu 1 286 -26 496 283 140 0 chr4 179402788 179403088 -4885574 - MLT1J1 LTR MaLR -6 440 99 235 337 160 6 chr4 179403780 179403961 -4884701 - MIR SINE MIR -4 258 50 1893 160 0 0 chr4 179405072 179405354 -4883308 + AluJb SINE Alu 1 282 -30 299 128 0 0 chr4 179406059 179406106 -4882556 - MLT2A1 LTR ERVL -8 436 390 242 71 0 0 chr4 179406107 179406149 -4882513 - LTR66 LTR ERVL -171 439 398 211 205 0 0 chr4 179406149 179406188 -4882474 + (TATATG)n Simple_repeat Simple_repeat 5 43 0 231 200 77 0 chr4 179406188 179406253 -4882409 - L1MCa LINE L1 -4362 2064 1995 339 211 0 0 chr4 179406256 179406346 -4882316 + (TA)n Simple_repeat Simple_repeat 1 90 0 477 110 0 0 chr4 179406501 179406574 -4882088 + (TA)n Simple_repeat Simple_repeat 1 73 0 3071 74 18 3 chr4 179406575 179406967 -4881695 - MLT2A2 LTR ERVL -55 398 1 1658 174 28 11 chr4 179407544 179407831 -4880831 - AluJb SINE Alu -20 292 1 268 324 77 35 chr4 179407833 179408354 -4880308 - L1M4 LINE L1 -3417 2729 2187 204 135 58 19 chr4 179408692 179408744 -4879918 + CT-rich Low_complexity Low_complexity 2 55 0 2308 126 36 6 chr4 179408868 179409232 -4879430 - THE1C LTR MaLR 0 375 1 572 283 31 9 chr4 179409324 179409550 -4879112 - HAL1b LINE L1 -756 592 362 1536 223 83 39 chr4 179409551 179410035 -4878627 + MLT1D LTR MaLR 1 505 0 333 0 0 0 chr4 179410051 179410088 -4878574 + (TG)n Simple_repeat Simple_repeat 2 38 0 314 361 79 17 chr4 179410118 179410359 -4878303 - HAL1b LINE L1 -1034 314 59 26 0 0 0 chr4 179410735 179410761 -4877901 + AT_rich Low_complexity Low_complexity 1 26 0 252 284 49 31 chr4 179411811 179411973 -4876689 - HAL1b LINE L1 -516 832 668 1001 125 0 0 chr4 179412430 179412566 -4876096 - AluSg/x SINE Alu -14 298 163 394 279 94 52 chr4 179413401 179413634 -4875028 - MIR SINE MIR 0 262 20 2207 105 10 10 chr4 179414347 179414653 -4874009 + AluSx SINE Alu 1 306 -6 452 253 93 39 chr4 179414688 179414870 -4873792 - MIR SINE MIR -58 204 13 1963 166 33 0 chr4 179415376 179415708 -4872954 - MLT1A1 LTR MaLR -22 343 1 2150 141 32 19 chr4 179415860 179416230 -4872432 + THE1C LTR MaLR 1 375 0 1879 118 45 24 chr4 179416887 179417175 -4871487 + AluJb SINE Alu 1 294 -18 246 313 174 10 chr4 179417476 179417677 -4870985 - MIR SINE MIR -17 245 12 322 311 11 11 chr4 179417881 179417971 -4870691 + LTR67 LTR ERVL 111 200 -357 814 299 94 18 chr4 179418334 179418718 -4869944 + HsTC2 DNA Tc2 477 889 -1009 366 107 0 0 chr4 179418848 179418904 -4869758 + (TC)n Simple_repeat Simple_repeat 2 57 0 2364 85 3 16 chr4 179418914 179419220 -4869442 - AluSp SINE Alu -11 302 1 247 281 0 0 chr4 179419220 179419274 -4869388 + CT-rich Low_complexity Low_complexity 8 64 0 199 343 39 0 chr4 179419612 179419714 -4868948 - MIR3 SINE MIR -6 202 97 636 245 7 0 chr4 179419775 179419922 -4868740 + L2 LINE L2 2910 3057 -256 1716 173 39 21 chr4 179419925 179420260 -4868402 + MER34C LTR ERV1 7 347 -238 576 188 123 32 chr4 179420260 179420414 -4868248 - L1ME LINE L1 -621 5545 5378 277 167 0 0 chr4 179420426 179420474 -4868188 + MER103 DNA DNA 38 85 -81 1151 255 88 35 chr4 179420584 179421094 -4867568 + MER34 LTR ERV1 1 537 -5 3408 132 10 2 chr4 179421413 179421921 -4866741 + MER41E LTR ERV1 1 512 0 251 268 0 14 chr4 179422756 179422827 -4865835 - L2 LINE L2 -1 3312 3243 1701 204 125 13 chr4 179423195 179423578 -4865084 + MSTB LTR MaLR 1 426 0 191 36 36 0 chr4 179423579 179423607 -4865055 + (TCTA)n Simple_repeat Simple_repeat 2 30 0 284 339 25 8 chr4 179423798 179423919 -4864743 - MER91A DNA MER1_type -3 193 71 1468 207 19 24 chr4 179424604 179424952 -4863710 - MER47B DNA MER2_type 0 418 20 1697 232 128 27 chr4 179425191 179425713 -4862949 + MLT1G LTR MaLR 16 590 0 347 182 15 0 chr4 179425854 179425920 -4862742 - MLT1D LTR MaLR -2 503 437 * 2565 252 47 16 chr4 179425919 179426481 -4862181 + MER69 DNA AcHobo 71 661 -565 2705 145 19 2 chr4 179426481 179426901 -4861761 + MSTA LTR MaLR 2 428 0 2565 252 47 16 chr4 179426901 179427045 -4861617 + MER69 DNA AcHobo 661 799 -427 1396 218 46 75 chr4 179427050 179427573 -4861089 + MER69 DNA AcHobo 2019 2526 0 1447 153 90 63 chr4 179428457 179428869 -4859793 - MSTA LTR MaLR -5 423 1 234 0 0 0 chr4 179429404 179429430 -4859232 + (CA)n Simple_repeat Simple_repeat 1 26 0 1387 169 39 84 chr4 179429442 179429797 -4858865 + MER44D DNA MER2_type 1 609 0 236 258 45 15 chr4 179429802 179429868 -4858794 + L1ME4a LINE L1 5605 5672 -449 2401 105 0 0 chr4 179429875 179430181 -4858481 + AluSx SINE Alu 1 306 -6 923 280 145 18 chr4 179430193 179430640 -4858022 + L1MC4a LINE L1 5375 5878 -1930 339 301 27 18 chr4 179430925 179431144 -4857518 + L1ME4a LINE L1 5678 5898 -223 1969 101 0 8 chr4 179433461 179433746 -4854916 + AluSx SINE Alu 29 311 0 275 250 0 0 chr4 179433783 179433843 -4854819 - LTR37B LTR ERV1 -402 66 7 857 267 64 21 chr4 179433848 179434129 -4854533 - HsTC2 DNA Tc2 -341 1557 1265 315 188 62 18 chr4 179434169 179434281 -4854381 - HsTC2 DNA Tc2 -79 1819 1703 4217 174 23 43 chr4 179434881 179435922 -4852740 - L1PB4 LINE L1 -20 6136 5103 180 0 0 0 chr4 179436876 179436896 -4851766 + (A)n Simple_repeat Simple_repeat 1 20 0 310 189 0 0 chr4 179437763 179437816 -4850846 + MER94 DNA DNA 26 78 -56 304 271 174 7 chr4 179439241 179439397 -4849265 + MIR SINE MIR 14 189 -63 2892 134 42 2 chr4 179439467 179439921 -4848741 + MER101 LTR ERV1 1 472 -2 307 279 45 9 chr4 179440174 179440285 -4848377 + MIR3 SINE MIR 85 199 -9 372 325 153 6 chr4 179440992 179441149 -4847513 + MER5A DNA MER1_type 10 189 0 1903 179 6 3 chr4 179441283 179441602 -4847060 - 7SLRNA srpRNA srpRNA 0 320 1 21 36 0 0 chr4 179441882 179441910 -4846752 + AT_rich Low_complexity Low_complexity 1 28 0 1983 117 88 23 chr4 179442126 179442478 -4846184 - THE1C LTR MaLR 0 375 1 10053 110 59 7 chr4 179442478 179443979 -4844683 - THE1C-int LTR MaLR 0 1580 1 1853 143 76 25 chr4 179443979 179444336 -4844326 - THE1C LTR MaLR 0 375 1 2027 192 86 25 chr4 179445188 179445698 -4842964 - MER67A LTR ERV1 -2 541 1 631 291 24 0 chr4 179446537 179446743 -4841919 + MIR SINE MIR 17 227 -35 1894 161 0 13 chr4 179446801 179447106 -4841556 + AluJb SINE Alu 1 301 -11 279 93 0 0 chr4 179447676 179447719 -4840943 + (ATTG)n Simple_repeat Simple_repeat 2 44 0 279 280 97 0 chr4 179447720 179447813 -4840849 - L2 LINE L2 0 3313 3212 936 186 4 0 chr4 179449339 179449837 -4838825 + (TAGA)n Simple_repeat Simple_repeat 1 500 0 314 177 0 16 chr4 179449845 179449907 -4838755 + (TGGA)n Simple_repeat Simple_repeat 1 61 0 1525 281 159 19 chr4 179449912 179450786 -4837876 - L2 LINE L2 -1619 1695 700 587 231 62 8 chr4 179450789 179450919 -4837743 + MER58A DNA MER1_type 1 137 0 324 351 39 7 chr4 179451879 179452033 -4836629 - HAL1b LINE L1 -749 599 441 213 357 133 17 chr4 179452476 179452717 -4835945 + L2 LINE L2 2427 2695 -619 495 183 0 11 chr4 179452752 179452845 -4835817 + Tigger2a DNA MER2_type 1 92 -342 195 42 0 0 chr4 179452849 179452873 -4835789 + (TCC)n Simple_repeat Simple_repeat 3 26 0 1109 151 65 60 chr4 179452876 179453108 -4835554 + Tigger2a DNA MER2_type 212 444 0 183 156 0 0 chr4 179453134 179453166 -4835496 + (CATATA)n Simple_repeat Simple_repeat 3 34 0 470 296 195 45 chr4 179453295 179453636 -4835026 + L2 LINE L2 2874 3277 -36 2303 106 3 0 chr4 179453636 179453939 -4834723 - AluSx SINE Alu -8 304 1 470 296 195 45 chr4 179453939 179453972 -4834690 + L2 LINE L2 3277 3304 -9 225 0 0 0 chr4 179455000 179455025 -4833637 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 37 69 0 0 chr4 179455545 179455617 -4833045 + AT_rich Low_complexity Low_complexity 1 72 0 222 227 47 20 chr4 179455700 179455850 -4832812 + (TA)n Simple_repeat Simple_repeat 1 154 0 222 164 16 49 chr4 179455901 179455962 -4832700 + (TA)n Simple_repeat Simple_repeat 2 60 0 239 171 0 0 chr4 179456331 179456372 -4832290 - MER91A DNA MER1_type -117 79 39 500 206 65 110 chr4 179457748 179458165 -4830497 - L1ME4a LINE L1 -46 6075 5678 393 103 11 0 chr4 179458170 179458235 -4830427 + MER6 DNA MER2_type 798 865 0 2075 124 3 0 chr4 179458505 179458795 -4829867 + AluSx SINE Alu 1 291 -21 252 273 0 0 chr4 179459266 179459332 -4829330 + L2 LINE L2 3243 3308 -5 1872 123 49 0 chr4 179459404 179459688 -4828974 - AluSx SINE Alu -14 298 1 228 241 138 23 chr4 179460648 179460735 -4827927 - MER63 DNA MER1_type -2 1058 962 854 189 206 68 chr4 179460826 179461154 -4827508 - MER63D DNA MER1_type -626 435 57 2044 169 31 17 chr4 179461154 179461514 -4827148 - MLT1A1 LTR MaLR 0 365 1 354 196 25 31 chr4 179461547 179461710 -4826952 + (TA)n Simple_repeat Simple_repeat 1 162 0 238 169 51 17 chr4 179461733 179461792 -4826870 + (TATATG)n Simple_repeat Simple_repeat 2 62 0 313 256 22 11 chr4 179461830 179461920 -4826742 + MER94 DNA DNA 38 128 -6 479 341 44 0 chr4 179462138 179462320 -4826342 + MIR SINE MIR 61 250 -12 254 280 110 60 chr4 179462559 179462859 -4825803 + MLT1K LTR MaLR 122 436 -152 684 185 0 0 chr4 179463085 179463247 -4825415 + CT-rich Low_complexity Low_complexity 3 164 0 665 135 29 0 chr4 179463254 179463358 -4825304 - FLAM_A SINE Alu -35 107 1 4618 153 25 64 chr4 179466316 179467172 -4821490 - LTR12 LTR ERV1 0 826 5 2078 205 28 27 chr4 179467188 179467789 -4820873 - pTR5 LTR ERV1 -1094 1344 743 1387 205 70 68 chr4 179467947 179468429 -4820233 - MLT1D LTR MaLR -6 499 14 4282 104 46 18 chr4 179468429 179469054 -4819608 + LTR9B LTR ERV1 1 643 -1 1387 205 70 68 chr4 179469054 179469068 -4819594 - MLT1D LTR MaLR -491 14 2 2393 74 0 3 chr4 179469613 179469909 -4818753 + AluSp SINE Alu 1 295 -18 348 292 103 18 chr4 179470611 179471069 -4817593 - L1MEd LINE L1 -3314 2901 2280 1021 123 237 0 chr4 179471076 179471287 -4817375 - L1MA3 LINE L1 -1 6304 6044 323 314 58 16 chr4 179471297 179471488 -4817174 - L1MEd LINE L1 -4085 2311 2113 902 277 69 38 chr4 179471738 179471816 -4816846 - L1MEd LINE L1 -794 1782 1708 1251 122 33 0 chr4 179471816 179471997 -4816665 + L1PA15 LINE L1 5979 6165 0 902 277 69 38 chr4 179471997 179472640 -4816022 - L1MEd LINE L1 -868 1708 950 1031 218 126 80 chr4 179472686 179473007 -4815655 - MER34C LTR ERV1 0 585 227 2120 132 3 0 chr4 179473007 179473302 -4815360 + AluSx SINE Alu 5 300 -12 1031 218 126 80 chr4 179473302 179473530 -4815132 - MER34C LTR ERV1 -358 227 11 441 66 0 0 chr4 179473628 179473689 -4814973 + (TG)n Simple_repeat Simple_repeat 2 62 0 326 323 76 62 chr4 179473693 179473806 -4814856 - L1MEd LINE L1 -5429 776 666 2303 137 6 23 chr4 179473806 179474149 -4814513 + MER1B DNA MER1_type 1 337 0 326 323 76 62 chr4 179474149 179474311 -4814351 - L1MEd LINE L1 -5539 666 497 216 0 0 0 chr4 179474350 179474374 -4814288 + (TG)n Simple_repeat Simple_repeat 2 25 0 2310 117 0 0 chr4 179474565 179474874 -4813788 - AluSc SINE Alu 0 309 1 11944 173 73 38 chr4 179476511 179476560 -4812102 + L1MCa LINE L1 21 67 -6359 1758 180 3 16 chr4 179476560 179476905 -4811757 + AluJo SINE Alu 1 312 0 11944 173 73 38 chr4 179476905 179478702 -4809960 + L1MCa LINE L1 67 1800 -4626 2198 112 0 16 chr4 179478702 179479005 -4809657 + AluSx SINE Alu 1 298 -14 11944 173 73 38 chr4 179479005 179480610 -4808052 + L1MCa LINE L1 1800 3596 -2830 222 316 101 22 chr4 179481083 179481222 -4807440 + L2 LINE L2 2386 2535 -779 230 196 0 36 chr4 179481338 179481394 -4807268 - LTR66 LTR ERVL -169 441 388 612 266 32 47 chr4 179481593 179481863 -4806799 - L1MC4a LINE L1 -347 5823 5645 638 255 5 62 chr4 179481954 179482146 -4806516 - MIR SINE MIR -21 241 61 425 270 243 18 chr4 179482157 179482379 -4806283 - L1MC4a LINE L1 -2154 5654 5383 2612 258 67 20 chr4 179483125 179484022 -4804640 - L1MC3 LINE L1 -12 7773 6835 340 239 11 11 chr4 179484022 179484110 -4804552 - L1MD3 LINE L1 -783 7212 7125 2553 238 60 45 chr4 179484269 179485042 -4803620 - MER21B LTR ERV1 -51 812 29 492 256 112 0 chr4 179485036 179485161 -4803501 + Tigger7 DNA MER2_type 141 279 -454 * 667 97 0 11 chr4 179485147 179485240 -4803422 + Tigger7 DNA MER2_type 2490 2581 -6 663 67 0 0 chr4 179485423 179485512 -4803150 + (TAGA)n Simple_repeat Simple_repeat 1 89 0 2383 168 12 17 chr4 179485918 179486037 -4802625 + MER57A LTR ERV1 1 119 -284 2683 150 2 0 chr4 179486037 179486437 -4802225 - MER57A LTR ERV1 -2 401 1 2383 168 12 17 chr4 179486437 179486722 -4801940 + MER57A LTR ERV1 119 403 0 26 30 0 0 chr4 179486948 179486981 -4801681 + AT_rich Low_complexity Low_complexity 1 33 0 2163 174 36 32 chr4 179487074 179487624 -4801038 - MLT2A2 LTR ERVL 0 554 1 1359 276 73 58 chr4 179488085 179488728 -4799934 + MER21B LTR ERV1 63 730 -13 2267 111 0 0 chr4 179489410 179489708 -4798954 - AluSx SINE Alu -14 298 1 339 25 0 0 chr4 179490504 179490544 -4798118 + (TG)n Simple_repeat Simple_repeat 1 40 0 234 62 0 0 chr4 179490544 179490576 -4798086 + (GA)n Simple_repeat Simple_repeat 2 33 0 250 242 0 0 chr4 179490649 179490711 -4797951 - HAL1 LINE L1 -1017 1490 1429 622 211 0 0 chr4 179490848 179490957 -4797705 + MER81 DNA DNA 4 112 -2 1140 279 79 43 chr4 179491009 179491525 -4797137 - L2 LINE L2 0 3313 2780 1369 76 0 0 chr4 179491528 179491699 -4796963 - AluSg/x SINE Alu -6 306 136 336 275 0 0 chr4 179491700 179491769 -4796893 - L2 LINE L2 -528 2786 2718 1582 199 16 102 chr4 179491772 179492274 -4796388 + MLT1C LTR MaLR 6 464 -3 391 289 0 31 chr4 179492277 179492405 -4796257 - L2 LINE L2 -492 2822 2699 772 260 34 107 chr4 179492570 179492614 -4796048 - MLT1J LTR MaLR 0 511 465 2015 135 7 3 chr4 179492614 179492918 -4795744 + AluSx SINE Alu 1 305 -7 772 260 34 107 chr4 179492918 179493257 -4795405 - MLT1J LTR MaLR -46 465 156 227 207 46 81 chr4 179493310 179493397 -4795265 - L1ME3 LINE L1 -91 6071 5988 344 224 47 35 chr4 179493849 179494019 -4794643 - L1MEc LINE L1 -4133 2263 2092 * 2656 183 32 35 chr4 179494007 179494607 -4794055 - L1MB2 LINE L1 -3 6168 5571 830 118 0 0 chr4 179494609 179494728 -4793934 + AluSg/x SINE Alu 184 302 -8 5476 171 57 72 chr4 179494728 179496175 -4792487 + LTR48-int LTR ERV1 3433 6149 -182 885 211 116 40 chr4 179496273 179496873 -4791789 + LTR48 LTR ERV1 1 542 0 4015 172 71 20 chr4 179496875 179497335 -4791327 - L1MB2 LINE L1 -1277 4869 4434 2034 113 44 0 chr4 179497335 179497640 -4791022 - AluSq SINE Alu 0 317 1 4015 172 71 20 chr4 179497640 179497779 -4790883 - L1MB2 LINE L1 -1712 4434 4303 342 0 0 0 chr4 179497779 179497817 -4790845 + (TG)n Simple_repeat Simple_repeat 1 38 0 4015 172 71 20 chr4 179497817 179498064 -4790598 - L1MB2 LINE L1 -1843 4303 3978 864 240 59 103 chr4 179498074 179498619 -4790043 - L1MEc LINE L1 -4288 2108 1588 216 281 88 0 chr4 179498771 179498828 -4789834 - MIR SINE MIR -64 144 83 245 39 78 0 chr4 179498863 179498914 -4789748 + T-rich Low_complexity Low_complexity 2 56 0 389 297 70 27 chr4 179500685 179500870 -4787792 + MIR SINE MIR 22 214 -48 620 283 38 16 chr4 179501197 179501381 -4787281 + MIR SINE MIR 3 190 -72 1498 213 128 22 chr4 179501390 179501803 -4786859 - MLT1C LTR MaLR -8 459 3 221 292 136 29 chr4 179501898 179502038 -4786624 - MIR SINE MIR -63 145 1 250 247 0 82 chr4 179502809 179502894 -4785768 + MIR3 SINE MIR 126 203 -5 374 257 38 0 chr4 179503176 179503281 -4785381 + LTR33 LTR ERVL 355 463 -58 562 124 0 19 chr4 179503503 179503608 -4785054 + (TTCC)n Simple_repeat Simple_repeat 2 104 0 249 159 0 0 chr4 179503787 179503831 -4784831 + CT-rich Low_complexity Low_complexity 1 44 0 6527 90 23 2 chr4 179504073 179505099 -4783563 - L1PB1 LINE L1 0 6151 5105 273 274 55 0 chr4 179505541 179505614 -4783048 + Tigger6 DNA MER2_type 5 81 -1516 6067 91 8 1 chr4 179505614 179506451 -4782211 + L1PB2 LINE L1 5306 6148 -3 1298 163 7 114 chr4 179506470 179506777 -4781885 + Tigger6 DNA MER2_type 63 336 -1261 3055 201 22 20 chr4 179507142 179507790 -4780872 + Tigger6 DNA MER2_type 945 1593 -4 659 287 0 6 chr4 179507799 179507956 -4780706 - MIR SINE MIR -106 156 1 1598 151 42 42 chr4 179508191 179508672 -4779990 + AluJb SINE Alu 1 481 0 622 277 70 28 chr4 179508824 179509037 -4779625 + L2 LINE L2 3091 3312 -1 553 202 28 9 chr4 179509199 179509308 -4779354 - MER81 DNA DNA -3 111 1 275 180 20 0 chr4 179513270 179513320 -4775342 + L1MA5A LINE L1 6150 6200 -97 195 386 70 14 chr4 179513339 179513554 -4775108 + MIR SINE MIR 18 244 -18 375 23 0 0 chr4 179514201 179514245 -4774417 + (GGATG)n Simple_repeat Simple_repeat 3 46 0 1745 158 7 10 chr4 179515132 179515435 -4773227 + AluJo SINE Alu 1 302 -10 189 147 0 0 chr4 179516077 179516111 -4772551 + (TC)n Simple_repeat Simple_repeat 1 34 0 2216 205 88 26 chr4 179517235 179517777 -4770885 + MLT1E LTR MaLR 4 573 -17 516 322 49 0 chr4 179517789 179517972 -4770690 + MIR SINE MIR 58 249 -13 213 241 13 101 chr4 179518148 179518227 -4770435 - MIR3 SINE MIR -9 199 128 212 299 56 37 chr4 179519122 179519229 -4769433 - MIR SINE MIR -133 129 21 324 151 19 142 chr4 179520157 179520263 -4768399 + MIR3 SINE MIR 93 185 -23 2571 30 0 7 chr4 179521126 179521431 -4767231 + AluY SINE Alu 2 304 -7 216 311 8 66 chr4 179522117 179522239 -4766423 + MIR SINE MIR 78 192 -70 1906 143 7 7 chr4 179522422 179522729 -4765933 - AluJo SINE Alu -5 307 1 198 304 0 51 chr4 179522729 179522808 -4765854 + MIR SINE MIR 122 196 -66 730 181 0 0 chr4 179522818 179522934 -4765728 + AluJb SINE Alu 3 118 -194 212 0 0 35 chr4 179522936 179522965 -4765697 + (CAA)n Simple_repeat Simple_repeat 2 29 0 1792 143 24 12 chr4 179523188 179523517 -4765145 + L1MB3 LINE L1 5844 6176 -7 325 289 178 7 chr4 179524106 179524241 -4764421 + MIR3 SINE MIR 25 182 -26 2269 93 3 0 chr4 179524370 179524681 -4763981 + AluSx SINE Alu 1 312 0 465 99 28 0 chr4 179525576 179525647 -4763015 - L1MC/D LINE L1 -650 5709 5637 4586 187 13 24 chr4 179525854 179526804 -4761858 - L1MD2 LINE L1 -10 6349 5411 361 208 42 0 chr4 179527004 179527076 -4761586 - MIR SINE MIR -109 153 79 553 240 16 8 chr4 179528795 179528924 -4759738 + L1ME1 LINE L1 6020 6149 -17 361 326 35 17 chr4 179529496 179529668 -4758994 - MIR SINE MIR -80 182 8 379 301 90 8 chr4 179530093 179530226 -4758436 - MIR3 SINE MIR -15 193 50 235 273 11 68 chr4 179530427 179530515 -4758147 - MIR SINE MIR -51 211 129 338 332 14 35 chr4 179530541 179530679 -4757983 - MIR SINE MIR -80 128 20 2063 95 7 11 chr4 179530955 179531264 -4757398 + AluSx SINE Alu 1 308 0 2182 89 7 3 chr4 179532219 179532522 -4756140 - AluSc SINE Alu -5 304 1 326 299 139 36 chr4 179533527 179533721 -4754941 + L2 LINE L2 3092 3305 -8 193 281 45 34 chr4 179533923 179534012 -4754650 - L3b LINE CR1 -343 1240 1151 1781 142 3 16 chr4 179535610 179535913 -4752749 + AluJo SINE Alu 3 301 -11 506 267 88 46 chr4 179536120 179536337 -4752325 + MIR SINE MIR 18 243 -19 2221 94 0 3 chr4 179537055 179537354 -4751308 - AluSx SINE Alu -14 298 1 216 0 0 0 chr4 179538001 179538025 -4750637 + (A)n Simple_repeat Simple_repeat 1 24 0 310 263 143 91 chr4 179539516 179539691 -4748971 - L3 LINE CR1 -132 1445 1262 332 262 156 25 chr4 179540015 179540137 -4748525 + MIR SINE MIR 34 171 -91 969 141 18 47 chr4 179540330 179540500 -4748162 - FRAM SINE Alu -1 165 1 620 224 39 6 chr4 179541511 179541667 -4746995 + MER104 DNA Tc2 17 177 -3 300 284 11 32 chr4 179541840 179541935 -4746727 - L2 LINE L2 0 3272 3180 1744 142 10 33 chr4 179542037 179542339 -4746323 + AluJb SINE Alu 14 308 -4 788 211 40 84 chr4 179542388 179542710 -4745952 + L1MC5 LINE L1 7467 7774 -187 225 233 0 96 chr4 179542732 179542759 -4745903 - MER116 DNA Mariner -2 78 50 2090 117 0 16 chr4 179542759 179543068 -4745594 + AluSx SINE Alu 1 304 -8 225 233 0 96 chr4 179543068 179543113 -4745549 - MER116 DNA Mariner -30 50 13 21 36 0 0 chr4 179543293 179543321 -4745341 + AT_rich Low_complexity Low_complexity 1 28 0 209 229 33 66 chr4 179543365 179543426 -4745236 + MIR3 SINE MIR 118 176 -32 484 275 0 0 chr4 179544831 179544940 -4743722 + MER81 DNA DNA 5 113 -1 180 0 0 0 chr4 179545567 179545587 -4743075 + (A)n Simple_repeat Simple_repeat 1 20 0 2005 128 0 0 chr4 179545873 179546163 -4742499 - AluSx SINE Alu -22 290 1 315 307 74 31 chr4 179546762 179546925 -4741737 - MIR SINE MIR -79 183 14 180 299 0 52 chr4 179546975 179547052 -4741610 + MER5B DNA MER1_type 77 149 -29 202 206 0 0 chr4 179547707 179547741 -4740921 + (CA)n Simple_repeat Simple_repeat 1 34 0 1841 199 88 0 chr4 179547858 179548246 -4740416 + MSTB LTR MaLR 5 426 0 3486 145 49 46 chr4 179548251 179548928 -4739734 + L1MB5 LINE L1 5464 6142 -32 300 288 61 30 chr4 179549758 179550022 -4738640 + L1MC5 LINE L1 7457 7728 -233 225 65 0 0 chr4 179550049 179550080 -4738582 + (CA)n Simple_repeat Simple_repeat 2 32 0 2730 125 28 21 chr4 179550334 179550759 -4737903 + MSTC LTR MaLR 1 428 0 223 295 39 39 chr4 179550963 179551092 -4737570 - L2 LINE L2 -16 3297 3169 1051 211 159 46 chr4 179551843 179551974 -4736688 - MLT1D LTR MaLR 0 505 390 352 0 0 0 chr4 179551974 179552013 -4736649 + (TTTG)n Simple_repeat Simple_repeat 2 112 0 2029 97 0 47 chr4 179552013 179552311 -4736351 - AluSx SINE Alu -28 284 1 1051 211 159 46 chr4 179552311 179552632 -4736030 - MLT1D LTR MaLR -114 391 1 688 213 58 7 chr4 179552884 179553039 -4735623 + MIR SINE MIR 100 262 0 1662 152 38 0 chr4 179553369 179553658 -4735004 + AluJb SINE Alu 1 300 -12 1903 145 0 3 chr4 179554511 179554807 -4733855 + AluJo SINE Alu 1 295 -17 1785 154 3 3 chr4 179556698 179556991 -4731671 - AluJo SINE Alu -19 293 1 236 146 0 21 chr4 179557242 179557290 -4731372 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 2503 230 42 2 chr4 179558135 179558665 -4729997 - MER82 DNA MER2_type 0 653 103 776 207 94 97 chr4 179558664 179558973 -4729689 + MLT1C LTR MaLR 158 465 -2 * 183 42 0 0 chr4 179559651 179559675 -4728987 + (TTGG)n Simple_repeat Simple_repeat 2 25 0 343 333 22 7 chr4 179560238 179560373 -4728289 + MIR3 SINE MIR 36 172 -36 290 178 51 144 chr4 179560848 179560898 -4727764 - MIR SINE MIR -12 250 216 902 211 0 0 chr4 179560898 179561064 -4727598 + FRAM SINE Alu 1 166 0 290 178 51 144 chr4 179561064 179561131 -4727531 - MIR SINE MIR -46 216 144 240 304 68 34 chr4 179561436 179561584 -4727078 + L1ME LINE L1 12 164 -5906 2328 94 0 0 chr4 179561961 179562270 -4726392 - AluSc SINE Alu 0 309 1 233 273 101 71 chr4 179562308 179562407 -4726255 - L2 LINE L2 -10 3262 3161 217 221 77 96 chr4 179562802 179562877 -4725785 - MIR SINE MIR -37 225 151 1412 185 13 41 chr4 179562877 179563047 -4725615 - AluJb SINE Alu -7 305 147 2125 102 0 20 chr4 179563047 179563351 -4725311 - AluSg SINE Alu -12 298 1 1412 185 13 41 chr4 179563351 179563494 -4725168 - AluJb SINE Alu -165 147 1 217 221 77 96 chr4 179563494 179563522 -4725140 - MIR SINE MIR -111 151 124 447 251 113 31 chr4 179564076 179564271 -4724391 - MIR SINE MIR -21 241 31 414 97 16 0 chr4 179564628 179564690 -4723972 - Alu SINE Alu -247 64 2 21 0 0 0 chr4 179565306 179565327 -4723335 + AT_rich Low_complexity Low_complexity 1 21 0 340 337 86 0 chr4 179566806 179566981 -4721681 - L2 LINE L2 -880 2434 2245 241 276 181 0 chr4 179567237 179567342 -4721320 + MER3 DNA MER1_type 1 124 -85 868 222 30 22 chr4 179567697 179567922 -4720740 - MIR SINE MIR 0 262 38 198 0 0 0 chr4 179568877 179568899 -4719763 + (TGGGGG)n Simple_repeat Simple_repeat 6 27 0 1990 101 0 4 chr4 179568922 179569200 -4719462 - AluSx SINE Alu -14 298 22 3350 148 17 9 chr4 179569203 179569779 -4718883 - L1PA16 LINE L1 -1 6165 5585 415 261 119 30 chr4 179570405 179570539 -4718123 + MIR SINE MIR 111 256 -6 340 255 85 29 chr4 179570541 179570677 -4717985 + L1ME LINE L1 5670 5811 -318 1218 180 16 0 chr4 179570692 179570886 -4717776 - Tigger7 DNA MER2_type -536 197 1 1998 144 0 3 chr4 179571367 179571679 -4716983 + AluSx SINE Alu 1 311 -1 2188 201 31 16 chr4 179571808 179572261 -4716401 + MLT1C LTR MaLR 6 465 -2 3904 256 95 17 chr4 179572510 179572715 -4715947 + L1MC4 LINE L1 6466 6654 -1388 1898 63 0 12 chr4 179572715 179572967 -4715695 + AluY SINE Alu 49 297 -14 3904 256 95 17 chr4 179572967 179574145 -4714517 + L1MC4 LINE L1 6654 8041 -1 216 270 153 22 chr4 179575251 179575388 -4713274 + L2 LINE L2 2913 3067 -205 361 245 66 9 chr4 179575408 179575514 -4713148 + L2 LINE L2 3200 3311 -2 270 258 32 11 chr4 179575860 179575953 -4712709 + MER94 DNA DNA 25 119 -15 1163 203 83 43 chr4 179575993 179576318 -4712344 - MER46C DNA MER2_type 0 338 1 198 0 0 0 chr4 179576832 179576854 -4711808 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 351 276 86 0 chr4 179577393 179577498 -4711164 - MIR SINE MIR -13 249 136 333 209 68 49 chr4 179578463 179578580 -4710082 + MIR SINE MIR 4 122 -92 1004 148 0 0 chr4 179578629 179578839 -4709823 + FRAM SINE Alu 10 219 0 431 233 68 15 chr4 179578874 179579007 -4709655 + L1ME LINE L1 5526 5665 -456 206 342 221 7 chr4 179580685 179580834 -4707828 + MIR SINE MIR 3 183 -79 278 146 0 18 chr4 179581236 179581291 -4707371 + (TCCCC)n Simple_repeat Simple_repeat 4 57 0 899 127 0 8 chr4 179581306 179581440 -4707222 - FLAM_C SINE Alu 0 133 1 204 313 50 38 chr4 179581882 179581962 -4706700 - L2 LINE L2 -35 3278 3198 263 307 71 0 chr4 179582286 179582426 -4706236 - L2 LINE L2 -223 3049 2900 392 248 19 81 chr4 179583081 179583242 -4705420 + MLT1E2 LTR MaLR 7 157 -469 188 328 40 40 chr4 179583957 179584082 -4704580 + L2 LINE L2 2849 2973 -299 281 366 104 0 chr4 179584313 179584447 -4704215 + L2 LINE L2 3123 3270 -2 4152 180 72 11 chr4 179585651 179586499 -4702163 + L1MB4 LINE L1 5280 6179 -1 588 143 0 0 chr4 179586616 179586714 -4701948 + (CA)n Simple_repeat Simple_repeat 2 99 0 388 202 11 11 chr4 179586963 179587057 -4701605 - L1MD3 LINE L1 -3 7992 7899 1509 192 36 0 chr4 179589327 179589634 -4699028 + MER33 DNA MER1_type 1 318 -6 21 0 0 0 chr4 179589643 179589664 -4698998 + AT_rich Low_complexity Low_complexity 1 21 0 374 258 0 10 chr4 179589895 179589992 -4698670 - LTR68 LTR ERV1 -3 737 642 1244 188 107 4 chr4 179590481 179590753 -4697909 - LTR68 LTR ERV1 -61 679 380 212 273 0 0 chr4 179590838 179590882 -4697780 + T-rich Low_complexity Low_complexity 2 45 0 349 254 70 65 chr4 179590960 179591145 -4697517 + LTR40a LTR ERVL 334 519 0 1143 280 95 35 chr4 179591408 179592000 -4696662 - L1ME4a LINE L1 -3 6118 5492 2244 77 33 0 chr4 179592046 179592346 -4696316 - AluSq SINE Alu -3 310 1 332 214 0 41 chr4 179592425 179592523 -4696139 + L1MA4 LINE L1 6194 6287 -13 1745 175 49 3 chr4 179592709 179593017 -4695645 - MER7A DNA MER2_type -26 320 1 2148 102 3 3 chr4 179594202 179594506 -4694156 + AluSx SINE Alu 1 304 -8 193 274 0 0 chr4 179595004 179595055 -4693607 + L2 LINE L2 3262 3312 -1 1762 126 24 17 chr4 179595391 179595685 -4692977 + AluJo SINE Alu 1 296 -16 228 171 0 0 chr4 179596337 179596372 -4692290 + MIR SINE MIR 216 250 -12 1928 131 6 31 chr4 179596396 179596716 -4691946 + AluSx SINE Alu 1 312 0 301 324 49 21 chr4 179597295 179597437 -4691225 + L2 LINE L2 3161 3306 -7 26 64 0 0 chr4 179599244 179599291 -4689371 + GC_rich Low_complexity Low_complexity 1 47 0 29 84 0 0 chr4 179599364 179599435 -4689227 + GC_rich Low_complexity Low_complexity 1 71 0 27 62 0 0 chr4 179599616 179599664 -4688998 + GC_rich Low_complexity Low_complexity 1 48 0 258 136 0 0 chr4 179599888 179599932 -4688730 + (CA)n Simple_repeat Simple_repeat 1 44 0 318 87 0 0 chr4 179600078 179600124 -4688538 + (TCC)n Simple_repeat Simple_repeat 2 47 0 189 121 0 0 chr4 179600131 179600164 -4688498 + (CAG)n Simple_repeat Simple_repeat 1 33 0 308 284 0 0 chr4 179600576 179600657 -4688005 + C-rich Low_complexity Low_complexity 1 81 0 22 35 0 0 chr4 179600909 179600938 -4687724 + GC_rich Low_complexity Low_complexity 1 29 0 1257 120 5 15 chr4 179601981 179602181 -4686481 + AluSp SINE Alu 1 198 -115 2388 98 0 0 chr4 179602285 179602582 -4686080 - AluSg SINE Alu -12 298 2 1346 164 0 72 chr4 179602583 179602845 -4685817 - MLT1B LTR MaLR -147 243 1 318 283 10 10 chr4 179602847 179602946 -4685716 - MER103 DNA DNA -2 164 66 323 210 63 105 chr4 179603079 179603222 -4685440 - MLT2F LTR ERVL -162 501 365 1591 187 17 20 chr4 179604431 179604731 -4683931 + AluJo SINE Alu 7 305 -7 1182 150 0 0 chr4 179604731 179604898 -4683764 + AluJb SINE Alu 134 300 -12 2044 116 49 0 chr4 179605331 179605616 -4683046 - AluSx SINE Alu -13 299 1 227 218 100 36 chr4 179605707 179605817 -4682845 - MIR SINE MIR -50 212 96 280 119 68 17 chr4 179605944 179606003 -4682659 - L1ME1 LINE L1 -17 6149 6088 231 246 62 15 chr4 179606003 179606068 -4682594 - MER3 DNA MER1_type -127 82 15 6870 228 102 17 chr4 179606068 179606721 -4681941 - L1ME1 LINE L1 -145 6021 5425 2523 60 0 3 chr4 179606721 179607019 -4681643 - AluY SINE Alu -14 297 1 6870 228 102 17 chr4 179607019 179607246 -4681416 - L1ME1 LINE L1 -741 5425 5219 2669 27 3 0 chr4 179607246 179607545 -4681117 - AluY SINE Alu -11 300 1 6870 228 102 17 chr4 179607545 179607673 -4680989 - L1ME1 LINE L1 -947 5219 5103 2476 167 43 5 chr4 179607673 179608115 -4680547 + LOR1b LTR ERV1 1 459 -2 6870 228 102 17 chr4 179608115 179609152 -4679510 - L1ME1 LINE L1 -1063 5103 4155 2177 103 0 3 chr4 179609152 179609457 -4679205 - AluSg SINE Alu 0 304 1 6870 228 102 17 chr4 179609457 179610396 -4678266 - L1ME1 LINE L1 -2011 4155 2770 22 80 0 0 chr4 179610941 179610991 -4677671 + AT_rich Low_complexity Low_complexity 1 50 0 380 271 9 9 chr4 179611086 179611193 -4677469 + MIR SINE MIR 4 110 -152 2030 70 124 13 chr4 179611508 179611807 -4676855 - L1PA11 LINE L1 0 6174 5843 2280 115 0 13 chr4 179612003 179612316 -4676346 - AluSx SINE Alu -3 309 1 1396 250 178 41 chr4 179612546 179613129 -4675533 + MLT2F LTR ERVL 1 663 0 244 281 0 24 chr4 179613147 179613229 -4675433 + MLT-int LTR MaLR 22 101 -1634 2261 119 0 0 chr4 179613450 179613760 -4674902 + AluSg SINE Alu 1 310 0 1191 143 21 0 chr4 179613760 179613949 -4674713 + AluSg/x SINE Alu 120 312 0 2359 83 0 13 chr4 179613962 179614276 -4674386 + AluY SINE Alu 1 310 -1 269 371 38 23 chr4 179614496 179614760 -4673902 + L1MDa LINE L1 80 347 -6193 241 211 26 13 chr4 179614803 179614879 -4673783 + MLT1G1-int LTR MaLR 1639 1715 -20 1313 221 29 14 chr4 179614913 179615193 -4673469 + MLT1G1 LTR MaLR 18 301 -294 236 167 58 142 chr4 179615186 179615306 -4673356 + MLT1G1 LTR MaLR 472 581 -12 * 3602 137 27 12 chr4 179616098 179616683 -4671979 - LTR26 LTR ERV1 0 603 10 2455 78 0 0 chr4 179616686 179616995 -4671667 + AluY SINE Alu 1 309 -2 228 182 0 0 chr4 179617210 179617254 -4671408 + MIR SINE MIR 105 148 -114 225 0 0 0 chr4 179619819 179619844 -4668818 + (TTCTC)n Simple_repeat Simple_repeat 2 26 0 219 200 0 0 chr4 179621286 179621331 -4667331 - L2 LINE L2 -6 3307 3263 242 302 195 0 chr4 179621578 179621737 -4666925 + L2 LINE L2 2337 2526 -788 366 289 18 26 chr4 179621799 179621913 -4666749 - MIR SINE MIR -98 164 52 534 143 0 0 chr4 179621916 179621993 -4666669 + AluS SINE Alu 2 78 -234 1403 92 74 18 chr4 179622463 179622680 -4665982 + MER30 DNA MER1_type 1 229 -1 246 341 23 8 chr4 179622902 179623034 -4665628 - L2 LINE L2 -312 3001 2868 1602 218 0 40 chr4 179623035 179623383 -4665279 - MER58B DNA MER1_type -6 335 2 514 327 50 43 chr4 179623389 179623667 -4664995 - L2 LINE L2 -440 2874 2595 396 0 0 0 chr4 179623946 179623990 -4664672 + (CA)n Simple_repeat Simple_repeat 1 44 0 2453 184 20 22 chr4 179623997 179624449 -4664213 + MLT2B2 LTR ERVL 8 458 -57 292 286 0 12 chr4 179624465 179624549 -4664113 + (TA)n Simple_repeat Simple_repeat 2 84 0 5525 122 14 5 chr4 179624595 179625422 -4663240 - HSMAR2 DNA Mariner -145 1157 323 183 42 0 0 chr4 179626039 179626063 -4662599 + (CAA)n Simple_repeat Simple_repeat 2 25 0 1398 215 132 50 chr4 179626622 179627083 -4661579 - MLT1D LTR MaLR 0 505 7 748 246 76 56 chr4 179627290 179627776 -4660886 - L1MEc LINE L1 -4807 1559 1023 268 109 18 0 chr4 179627781 179627836 -4660826 - L1MC3 LINE L1 -6 7779 7724 2563 136 17 22 chr4 179627850 179628263 -4660399 - MSTA LTR MaLR -17 411 1 4398 113 3 3 chr4 179628268 179628921 -4659741 - L1P LINE L1 -1187 4959 4307 32 43 0 0 chr4 179628923 179628969 -4659693 + AT_rich Low_complexity Low_complexity 1 46 0 1116 193 14 0 chr4 179628973 179629180 -4659482 - MER2 DNA MER2_type -134 211 2 1234 150 38 60 chr4 179629181 179629448 -4659214 - L1MC3 LINE L1 -823 6962 6702 2371 83 0 19 chr4 179629478 179629790 -4658872 - AluSg SINE Alu -4 306 1 1210 249 65 113 chr4 179629790 179630848 -4657814 - L1MEc LINE L1 -5340 1056 49 1004 258 52 68 chr4 179630899 179631173 -4657489 - HAL1 LINE L1 -1133 1374 1097 1916 161 41 16 chr4 179631173 179631539 -4657123 - THE1C LTR MaLR 0 375 1 1004 258 52 68 chr4 179631539 179631838 -4656824 - HAL1 LINE L1 -1410 1097 810 909 208 0 0 chr4 179631844 179632012 -4656650 + FRAM SINE Alu 6 173 -3 763 128 15 8 chr4 179632568 179632701 -4655961 - L1MA4 LINE L1 -1 6299 6166 2507 71 0 0 chr4 179633218 179633527 -4655135 + AluY SINE Alu 3 311 0 2013 149 3 3 chr4 179634725 179635026 -4653636 + AluJb SINE Alu 1 301 -11 23 0 0 0 chr4 179635074 179635097 -4653565 + AT_rich Low_complexity Low_complexity 1 23 0 297 0 0 0 chr4 179635110 179635143 -4653519 + (CA)n Simple_repeat Simple_repeat 1 33 0 404 297 31 52 chr4 179635360 179635445 -4653217 - L1MC4a LINE L1 -1887 5921 5836 1636 174 6 63 chr4 179635445 179635761 -4652901 - AluJb SINE Alu -14 298 1 404 297 31 52 chr4 179635761 179635904 -4652758 - L1MC4a LINE L1 -1972 5836 5698 27 62 0 0 chr4 179635918 179635966 -4652696 + AT_rich Low_complexity Low_complexity 1 48 0 470 112 0 11 chr4 179636495 179636584 -4652078 + (TG)n Simple_repeat Simple_repeat 1 88 0 1934 94 12 72 chr4 179637366 179637571 -4651091 - AluSg SINE Alu -10 300 119 2248 87 40 10 chr4 179637571 179637871 -4650791 - AluY SINE Alu -2 309 1 1934 94 12 72 chr4 179637871 179637984 -4650678 - AluSg SINE Alu -191 119 1 364 183 28 0 chr4 179638036 179638107 -4650555 - L1ME4a LINE L1 -71 6050 5978 1884 109 109 56 chr4 179638401 179638760 -4649902 + MER83B LTR ERV1 1 378 0 2251 78 42 0 chr4 179639395 179639678 -4648984 + AluY SINE Alu 1 295 -16 1767 161 3 23 chr4 179639814 179639879 -4648783 - AluJo SINE Alu -13 299 234 2411 163 33 18 chr4 179639879 179640333 -4648329 + LOR1b LTR ERV1 1 461 0 1767 161 3 23 chr4 179640333 179640566 -4648096 - AluJo SINE Alu -78 234 7 21 0 0 0 chr4 179640648 179640669 -4647993 + AT_rich Low_complexity Low_complexity 1 21 0 1813 178 0 17 chr4 179640842 179641140 -4647522 + AluJo SINE Alu 4 296 -16 2507 172 19 42 chr4 179641452 179641642 -4647020 + MLT1C LTR MaLR 7 200 -267 2520 78 0 0 chr4 179641642 179641951 -4646711 + AluY SINE Alu 1 309 -2 2507 172 19 42 chr4 179641951 179642232 -4646430 + MLT1C LTR MaLR 200 467 0 435 301 112 26 chr4 179642243 179642512 -4646150 + L2 LINE L2 3005 3296 -17 3729 158 75 41 chr4 179642832 179643680 -4644982 + L1MA9 LINE L1 5320 6292 -20 1515 189 6 39 chr4 179643708 179644020 -4644642 - AluJo SINE Alu -10 302 1 28 61 0 0 chr4 179644023 179644072 -4644590 + AT_rich Low_complexity Low_complexity 1 49 0 639 124 0 0 chr4 179644374 179644487 -4644175 + (CA)n Simple_repeat Simple_repeat 2 114 0 261 267 111 11 chr4 179645190 179645280 -4643382 + L2 LINE L2 3209 3307 -6 2470 53 3 20 chr4 179645625 179645927 -4642735 - AluY SINE Alu -9 302 6 401 283 11 27 chr4 179646329 179646513 -4642149 - L2 LINE L2 -1055 2259 2079 384 279 48 0 chr4 179646624 179646771 -4641891 + L1ME4a LINE L1 5963 6116 -5 188 243 203 0 chr4 179646845 179646919 -4641743 - L2 LINE L2 -2 3270 3182 183 331 39 71 chr4 179646926 179647234 -4641428 - L2 LINE L2 -405 2909 2612 718 176 99 0 chr4 179647932 179648063 -4640599 + FRAM SINE Alu 1 144 -32 2541 63 0 0 chr4 179648063 179648365 -4640297 - AluSg SINE Alu -8 302 1 277 304 32 19 chr4 179648454 179648612 -4640050 + L1M4 LINE L1 3706 3865 -2281 21 57 0 0 chr4 179648674 179648709 -4639953 + AT_rich Low_complexity Low_complexity 1 35 0 2256 98 3 3 chr4 179648712 179649008 -4639654 + AluSg SINE Alu 1 296 -14 5270 135 40 18 chr4 179649016 179649678 -4638984 - L1PA16 LINE L1 -9 6157 5470 2338 79 0 0 chr4 179649678 179649968 -4638694 - AluY SINE Alu -21 290 1 5270 135 40 18 chr4 179649968 179650293 -4638369 - L1PA16 LINE L1 -696 5470 5154 1381 171 95 0 chr4 179650301 179650553 -4638109 + AluJb SINE Alu 1 276 -36 3224 196 20 2 chr4 179650571 179651214 -4637448 - L1PA16 LINE L1 -992 5154 4500 1011 121 0 0 chr4 179651491 179651631 -4637031 - AluJb SINE Alu 0 312 173 638 149 66 33 chr4 179651741 179651862 -4636800 + FLAM_A SINE Alu 1 125 -8 277 167 0 0 chr4 179651866 179651908 -4636754 - FLAM SINE Alu -8 125 84 694 211 0 0 chr4 179653663 179653777 -4634885 + FLAM_A SINE Alu 2 115 -18 1338 223 31 1 chr4 179653786 179654122 -4634540 - MER93a LTR ERV1 -2 400 4 4850 166 46 13 chr4 179654600 179655639 -4633023 + L1MB3 LINE L1 5099 6180 -3 22 70 0 0 chr4 179655673 179655716 -4632946 + AT_rich Low_complexity Low_complexity 1 43 0 1842 126 90 0 chr4 179656622 179656900 -4631762 - AluSg SINE Alu -7 303 1 1330 113 10 15 chr4 179656903 179657098 -4631564 - AluSc SINE Alu -115 194 1 241 296 0 12 chr4 179657216 179657297 -4631365 + AluJ/FLAM SINE Alu 1 80 -222 16831 132 7 17 chr4 179657399 179660594 -4628068 - L1PA11 LINE L1 -348 5826 2664 332 227 73 64 chr4 179660730 179660840 -4627822 + L1MD2 LINE L1 6044 6154 -205 360 105 35 0 chr4 179661404 179661461 -4627201 + L1MC2 LINE L1 6283 6341 -3 2216 126 3 0 chr4 179661567 179661876 -4626786 + AluSg SINE Alu 1 310 0 704 258 12 6 chr4 179661877 179662044 -4626618 - MIR SINE MIR 0 262 95 241 315 146 30 chr4 179662044 179662447 -4626215 + LTR16A LTR ERVL 1 450 0 192 241 161 35 chr4 179662447 179662534 -4626128 - MIR SINE MIR -163 99 2 1109 120 22 22 chr4 179662618 179662802 -4625860 - L1MB7 LINE L1 0 6184 6001 365 302 85 14 chr4 179662926 179663138 -4625524 + L1ME LINE L1 5593 5819 -302 398 286 34 29 chr4 179663443 179663618 -4625044 + MIR SINE MIR 17 192 -70 449 110 253 11 chr4 179663638 179663729 -4624933 - AluJb SINE Alu -18 294 182 719 242 116 25 chr4 179664198 179664475 -4624187 + L2 LINE L2 1487 1788 -1526 1496 138 36 24 chr4 179664595 179664783 -4623879 - MER2 DNA MER2_type 0 345 114 2364 94 53 42 chr4 179664783 179665143 -4623519 + THE1B LTR MaLR 1 364 0 1496 138 36 24 chr4 179665143 179665257 -4623405 - MER2 DNA MER2_type -231 114 3 3586 202 46 29 chr4 179665268 179665953 -4622709 - L1ME1 LINE L1 -51 6115 5409 605 227 15 0 chr4 179665953 179666085 -4622577 + L1PB4 LINE L1 6022 6155 -1 3586 202 46 29 chr4 179666085 179666323 -4622339 - L1ME1 LINE L1 -757 5409 5176 2334 167 52 32 chr4 179666322 179666825 -4621837 + L1MA7 LINE L1 5777 6289 -2 * 409 187 33 0 chr4 179666856 179666947 -4621715 - L1ME1 LINE L1 -973 5173 5080 1853 229 24 30 chr4 179666947 179667441 -4621221 + L1M4 LINE L1 4477 4967 -1179 2118 118 7 0 chr4 179667449 179667746 -4620916 + AluSx SINE Alu 5 303 -9 2560 37 0 3 chr4 179667749 179668046 -4620616 + AluY SINE Alu 4 299 -12 1716 179 13 19 chr4 179668667 179668979 -4619683 + AluJo SINE Alu 1 310 -2 180 111 0 0 chr4 179670381 179670408 -4618254 + (ATG)n Simple_repeat Simple_repeat 1 27 0 667 282 64 10 chr4 179670422 179670624 -4618038 - MIR SINE MIR -15 247 35 534 264 79 82 chr4 179670809 179671112 -4617550 - L2 LINE L2 -1 3312 3011 581 100 0 133 chr4 179671119 179671239 -4617423 + MLT2C1 LTR ERVL 1 104 -293 279 271 49 41 chr4 179671369 179671491 -4617171 - MIR SINE MIR -61 147 60 1863 147 78 3 chr4 179672400 179672720 -4615942 + MER2 DNA MER2_type 1 344 0 225 94 0 0 chr4 179673345 179673377 -4615285 + (TTCC)n Simple_repeat Simple_repeat 4 35 0 2250 118 0 0 chr4 179673416 179673720 -4614942 + AluSg SINE Alu 1 304 -6 1809 153 10 10 chr4 179674005 179674299 -4614363 - AluJb SINE Alu -18 294 1 1636 201 56 5 chr4 179674299 179674691 -4613971 + L1 LINE L1 2751 3162 -2984 22 88 0 0 chr4 179675396 179675453 -4613209 + AT_rich Low_complexity Low_complexity 1 57 0 2083 97 0 52 chr4 179675684 179675993 -4612669 + AluSg SINE Alu 2 294 -16 2116 136 13 0 chr4 179676090 179676398 -4612264 + AluSx SINE Alu 1 312 0 237 200 36 0 chr4 179676766 179676821 -4611841 - MIR SINE MIR -109 153 97 2173 86 3 89 chr4 179677551 179677887 -4610775 + AluSq SINE Alu 1 307 -6 579 306 110 48 chr4 179678556 179679140 -4609522 + L1ME4a LINE L1 5394 6013 -108 25 0 0 0 chr4 179679232 179679257 -4609405 + AT_rich Low_complexity Low_complexity 1 25 0 284 80 0 120 chr4 179679724 179679760 -4608902 + MER63 DNA MER1_type 677 707 -129 2099 208 46 16 chr4 179679760 179680213 -4608449 + MLT1C LTR MaLR 1 467 0 284 80 0 120 chr4 179680213 179680226 -4608436 + MER63 DNA MER1_type 707 720 -116 2026 132 42 36 chr4 179680227 179680362 -4608300 + MER46B DNA MER2_type 2 17 -2714 2586 178 9 0 chr4 179680362 179680801 -4607861 + L1PB4 LINE L1 5712 6154 -2 2026 132 42 36 chr4 179680801 179681021 -4607641 + MER46B DNA MER2_type 17 234 -2 2366 99 0 3 chr4 179681553 179681855 -4606807 - AluSc SINE Alu -8 301 1 672 265 110 5 chr4 179681891 179682091 -4606571 + MIR SINE MIR 28 248 -14 818 141 8 0 chr4 179682776 179682897 -4605765 + FLAM_A SINE Alu 1 122 -11 2697 14 0 0 chr4 179682933 179683228 -4605434 - AluY SINE Alu -16 295 1 232 36 0 0 chr4 179683830 179683858 -4604804 - MER61A LTR ERV1 0 343 316 1591 166 7 18 chr4 179683899 179684182 -4604480 - MER61A LTR ERV1 0 343 64 1838 145 4 0 chr4 179684328 179684604 -4604058 - AluJb SINE Alu -9 303 27 190 327 0 0 chr4 179684814 179684866 -4603796 - L2 LINE L2 -19 3294 3243 355 349 45 0 chr4 179686063 179686195 -4602467 + MIR SINE MIR 6 143 -119 2296 50 40 10 chr4 179686215 179686512 -4602150 + AluY SINE Alu 1 306 -5 320 263 76 51 chr4 179687139 179687257 -4601405 + L2 LINE L2 3193 3313 0 2245 105 3 0 chr4 179687258 179687552 -4601110 + AluY SINE Alu 1 295 -16 2117 120 0 3 chr4 179687970 179688269 -4600393 - AluSx SINE Alu -14 298 1 377 260 96 96 chr4 179688369 179688577 -4600085 + MIR SINE MIR 44 251 -11 1857 116 22 0 chr4 179688889 179689166 -4599496 + L1MA4 LINE L1 6018 6300 0 1349 253 120 23 chr4 179689577 179690125 -4598537 - MER115 DNA AcHobo -50 643 6 357 248 36 44 chr4 179690471 179690608 -4598054 + LTR16C LTR ERVL 340 475 -16 10805 116 36 54 chr4 179690611 179690710 -4597952 - Tigger1 DNA MER2_type -1 2417 2318 2200 94 38 3 chr4 179690710 179690998 -4597664 + AluSx SINE Alu 2 299 -13 10805 116 36 54 chr4 179690998 179691597 -4597065 - Tigger1 DNA MER2_type -100 2318 1710 2444 84 3 0 chr4 179691597 179691896 -4596766 + AluSp SINE Alu 1 300 -13 10805 116 36 54 chr4 179691896 179692574 -4596088 - Tigger1 DNA MER2_type -708 1710 1078 1885 151 0 33 chr4 179692574 179692878 -4595784 - AluJb SINE Alu -18 294 1 10805 116 36 54 chr4 179692878 179693310 -4595352 - Tigger1 DNA MER2_type -1340 1078 640 2290 94 7 0 chr4 179693928 179694227 -4594435 + AluSp SINE Alu 1 301 -12 3390 190 30 2 chr4 179694774 179695400 -4593262 - Tigger1 DNA MER2_type -1744 674 31 2284 89 3 0 chr4 179695637 179695928 -4592734 - AluSq SINE Alu -21 292 1 903 148 0 15 chr4 179696391 179696526 -4592136 + FLAM_C SINE Alu 1 133 0 209 123 246 0 chr4 179696575 179696632 -4592030 - MIR3 SINE MIR -9 199 129 2111 120 0 3 chr4 179696755 179697039 -4591623 + AluSq SINE Alu 5 287 -26 288 266 73 18 chr4 179697428 179697537 -4591125 - L2 LINE L2 -6 3266 3152 186 43 0 0 chr4 179697875 179697898 -4590764 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1826 157 34 17 chr4 179698415 179698709 -4589953 + AluJo SINE Alu 1 299 -13 23 33 0 0 chr4 179699238 179699268 -4589394 + AT_rich Low_complexity Low_complexity 1 30 0 1897 172 3 0 chr4 179699325 179699627 -4589035 + AluSx SINE Alu 3 305 -7 268 85 43 0 chr4 179699639 179699686 -4588976 + HAL1b LINE L1 1045 1093 -255 * 3787 224 63 52 chr4 179699681 179700090 -4588572 + L1MDa LINE L1 1328 1731 -4809 6381 18 0 0 chr4 179700090 179700772 -4587890 - L1PA4 LINE L1 0 6155 5474 3787 224 63 52 chr4 179700772 179701704 -4586958 + L1MDa LINE L1 1731 2685 -3855 203 0 37 0 chr4 179701704 179701731 -4586931 + (GAAAA)n Simple_repeat Simple_repeat 5 32 0 318 244 104 67 chr4 179701732 179701787 -4586875 + L1MDa LINE L1 2667 2719 -3821 2613 65 0 0 chr4 179701787 179702095 -4586567 + AluSp SINE Alu 1 308 -5 318 244 104 67 chr4 179702095 179702174 -4586488 + L1MDa LINE L1 2719 2806 -3734 283 158 147 21 chr4 179702205 179702300 -4586362 + L1MDa LINE L1 2779 2885 -3655 251 251 55 122 chr4 179702287 179702387 -4586275 + HAL1b LINE L1 1079 1184 -164 * 2418 82 3 0 chr4 179702387 179702564 -4586098 - AluSx SINE Alu -5 307 127 441 0 0 0 chr4 179702564 179702613 -4586049 + (TG)n Simple_repeat Simple_repeat 2 50 0 2418 82 3 0 chr4 179702613 179702741 -4585921 - AluSx SINE Alu -185 127 1 251 251 55 122 chr4 179702741 179702911 -4585751 + HAL1b LINE L1 1184 1331 -17 21 82 0 0 chr4 179702911 179702960 -4585702 + AT_rich Low_complexity Low_complexity 1 49 0 2265 102 0 22 chr4 179703451 179703766 -4584896 + AluY SINE Alu 1 308 -3 1617 165 0 50 chr4 179704227 179704524 -4584138 + AluJo SINE Alu 1 282 -30 746 281 100 39 chr4 179704531 179704546 -4584116 + L1ME LINE L1 4639 4652 -1510 183 100 0 0 chr4 179704546 179704576 -4584086 + (TA)n Simple_repeat Simple_repeat 2 31 0 746 281 100 39 chr4 179704576 179705056 -4583606 + L1ME LINE L1 4652 5101 -1061 1949 94 36 23 chr4 179705056 179705363 -4583299 + AluSx SINE Alu 1 311 -1 746 281 100 39 chr4 179705363 179705645 -4583017 + L1ME LINE L1 5101 5364 -798 2666 91 8 0 chr4 179705645 179705997 -4582665 - THE1A LTR MaLR 0 355 1 11846 90 9 2 chr4 179705997 179707566 -4581096 - THE1A-int LTR MaLR 0 1580 1 2788 82 3 0 chr4 179707566 179707920 -4580742 - THE1A LTR MaLR 0 355 1 746 281 100 39 chr4 179707920 179708210 -4580452 + L1ME LINE L1 5363 5776 -386 2158 97 10 7 chr4 179708605 179708913 -4579749 - AluSc SINE Alu 0 309 1 1283 179 62 117 chr4 179708944 179709330 -4579332 + MLT1A1 LTR MaLR 1 365 0 1417 164 64 21 chr4 179710596 179710876 -4577786 + AluJo SINE Alu 9 300 -12 180 0 0 0 chr4 179710976 179710996 -4577666 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 392 127 32 0 chr4 179712221 179712284 -4576378 - AluS SINE Alu -6 295 231 927 114 0 36 chr4 179712384 179712524 -4576138 + MER1B DNA MER1_type 205 339 0 723 175 0 0 chr4 179712524 179712636 -4576026 - MER6B DNA MER2_type -161 115 4 2115 100 7 0 chr4 179712763 179713054 -4575608 - AluSx SINE Alu -19 293 1 466 304 14 22 chr4 179713250 179713388 -4575274 + MIR SINE MIR 117 253 -9 1391 110 176 206 chr4 179713585 179714159 -4574503 + pTR5 LTR ERV1 1739 2295 -143 422 248 103 0 chr4 179714171 179714288 -4574374 + MLT1E1 LTR MaLR 518 646 -8 411 286 133 44 chr4 179714472 179714675 -4573987 - MIR SINE MIR -17 245 25 260 233 6 0 chr4 179715127 179715197 -4573465 - Tigger2a DNA MER2_type -1 443 363 223 227 13 60 chr4 179715592 179715742 -4572920 + G-rich Low_complexity Low_complexity 1 143 0 190 327 0 0 chr4 179716059 179716111 -4572551 + L2 LINE L2 3243 3294 -19 2288 66 0 0 chr4 179716183 179716469 -4572193 - AluSg SINE Alu -24 286 1 334 351 42 12 chr4 179716563 179716728 -4571934 + L1 LINE L1 3707 3876 -2270 21 57 0 0 chr4 179716778 179716813 -4571849 + AT_rich Low_complexity Low_complexity 1 35 0 2132 98 3 3 chr4 179716816 179717112 -4571550 + AluSg SINE Alu 1 296 -14 1209 152 24 14 chr4 179717120 179717331 -4571331 - L1PA16 LINE L1 -9 6157 5945 3212 131 55 111 chr4 179717457 179718052 -4570610 + Tigger1 DNA MER2_type 1762 2314 -104 2093 94 38 3 chr4 179718052 179718340 -4570322 - AluSx SINE Alu -13 299 2 3212 131 55 111 chr4 179718340 179718439 -4570223 + Tigger1 DNA MER2_type 2314 2417 -1 389 214 43 43 chr4 179718442 179718559 -4570103 - LTR16C LTR ERVL -16 475 359 306 206 73 0 chr4 179718923 179718991 -4569671 + MER115 DNA AcHobo 6 78 -615 602 320 93 27 chr4 179719072 179719406 -4569256 + MER115 DNA AcHobo 223 578 -115 3217 163 95 32 chr4 179719861 179720511 -4568151 + LTR8 LTR ERV1 1 691 0 2199 110 3 7 chr4 179720667 179720977 -4567685 + L1P3 LINE L1 10 318 -6143 1489 131 13 103 chr4 179721079 179721237 -4567425 - MER72 LTR ERV1 -387 335 217 2062 128 3 10 chr4 179721237 179721549 -4567113 + AluSx SINE Alu 1 310 -2 1489 131 13 103 chr4 179721549 179721702 -4566960 - MER72 LTR ERV1 -505 217 52 1615 153 5 92 chr4 179721705 179722083 -4566579 - MER4A LTR ERV1 0 664 261 496 144 89 0 chr4 179722083 179722173 -4566489 - MER4A LTR ERV1 -566 98 1 316 115 0 39 chr4 179722175 179722227 -4566435 - MER72 LTR ERV1 -672 50 1 849 184 0 0 chr4 179722442 179722578 -4566084 + LTR26B LTR ERV1 372 507 -24 1642 144 14 10 chr4 179722660 179722951 -4565711 + L1PA16 LINE L1 5862 6153 -13 302 267 13 0 chr4 179722982 179723057 -4565605 + MER21B LTR ERV1 15 90 -773 1595 189 64 29 chr4 179723445 179724060 -4564602 - LTR62 LTR ERVK -2 717 1 2239 74 3 10 chr4 179724459 179724756 -4563906 + AluSg SINE Alu 3 297 -13 1043 165 4 58 chr4 179725258 179725501 -4563161 + L1MA8 LINE L1 6044 6273 -18 1152 199 217 21 chr4 179725579 179725648 -4563014 - MSTB2 LTR MaLR 0 457 403 2155 110 0 3 chr4 179725648 179725948 -4562714 + AluSq SINE Alu 1 299 -14 1152 199 217 21 chr4 179725948 179726260 -4562402 - MSTB2 LTR MaLR -54 403 1 565 119 0 12 chr4 179726271 179726355 -4562307 + Tigger2a DNA MER2_type 9 91 -343 217 273 0 36 chr4 179726604 179726659 -4562003 - MIR SINE MIR -6 256 204 2080 128 3 0 chr4 179727216 179727512 -4561150 - AluSx SINE Alu -15 297 1 2257 90 3 3 chr4 179727746 179728056 -4560606 - AluSp SINE Alu -3 310 1 932 272 105 40 chr4 179728122 179728570 -4560092 - L1ME3 LINE L1 -295 5867 5391 357 247 55 106 chr4 179729140 179729432 -4559230 - L1ME3 LINE L1 -2796 3350 3074 3896 144 28 35 chr4 179729491 179730199 -4558463 + Tigger2 DNA MER2_type 55 757 -1961 1591 142 24 4 chr4 179730253 179730506 -4558156 + Tigger2 DNA MER2_type 2461 2718 0 605 220 129 30 chr4 179730506 179730738 -4557924 + L1ME3A LINE L1 5908 6162 -8 2242 66 10 0 chr4 179731316 179731604 -4557058 + AluSg SINE Alu 4 294 -16 2381 71 0 0 chr4 179731606 179731914 -4556748 + AluY SINE Alu 1 308 -3 1974 108 11 0 chr4 179732665 179732951 -4555711 + AluSg SINE Alu 1 289 -21 2306 83 3 0 chr4 179733752 179734052 -4554610 + AluSg SINE Alu 1 301 -9 1448 181 32 11 chr4 179734095 179734372 -4554290 - AluJb SINE Alu -21 291 9 338 306 42 78 chr4 179734404 179734529 -4554133 - MER5A DNA MER1_type -3 186 69 1771 166 44 75 chr4 179734529 179735010 -4553652 - MER31B LTR ERV1 0 466 1 338 306 42 78 chr4 179735010 179735077 -4553585 - MER5A DNA MER1_type -120 69 1 897 180 62 31 chr4 179735238 179735432 -4553230 - MER21B LTR ERV1 -102 761 562 1792 155 3 57 chr4 179735435 179735597 -4553065 - LTR26B LTR ERV1 0 531 395 2130 93 0 20 chr4 179735597 179735899 -4552763 - AluSc SINE Alu -13 296 1 1792 155 3 57 chr4 179735899 179736071 -4552591 - LTR26B LTR ERV1 -136 395 215 1974 112 0 17 chr4 179736267 179736563 -4552099 + AluSx SINE Alu 1 291 -21 622 268 69 17 chr4 179736875 179737109 -4551553 + MIR SINE MIR 2 251 -11 2142 109 0 7 chr4 179737960 179738264 -4550398 - AluSq SINE Alu -11 302 1 2266 87 0 7 chr4 179738275 179738575 -4550087 - AluSq SINE Alu -15 298 1 1107 269 128 16 chr4 179739421 179739852 -4548810 - MER76 LTR ERV -11 677 199 2168 103 0 3 chr4 179740019 179740320 -4548342 - AluSg SINE Alu -10 300 1 1866 102 0 59 chr4 179740495 179740840 -4547822 + AluSq SINE Alu 1 327 0 195 42 0 0 chr4 179740881 179740905 -4547757 + (T)n Simple_repeat Simple_repeat 1 24 0 201 176 0 0 chr4 179740973 179741007 -4547655 + T-rich Low_complexity Low_complexity 1 34 0 1760 188 22 27 chr4 179741845 179742212 -4546450 - L1MDa LINE L1 -6142 398 34 191 170 0 64 chr4 179742232 179742279 -4546383 + MER5B DNA MER1_type 80 123 -55 2238 218 54 29 chr4 179742401 179743030 -4545632 - L1ME2 LINE L1 -17 6147 5503 1679 164 0 45 chr4 179743590 179743737 -4544925 + AluJb SINE Alu 1 128 -184 2194 112 0 0 chr4 179743737 179744031 -4544631 + AluSx SINE Alu 1 294 -18 1679 164 0 45 chr4 179744031 179744195 -4544467 + AluJb SINE Alu 128 298 -14 223 214 0 71 chr4 179744487 179744543 -4544119 + MIR3 SINE MIR 109 160 -48 1519 217 24 111 chr4 179744866 179745414 -4543248 + MLT1E1 LTR MaLR 3 502 -152 2160 97 10 0 chr4 179746157 179746455 -4542207 + AluY SINE Alu 2 302 -9 23 0 0 0 chr4 179746728 179746751 -4541911 + AT_rich Low_complexity Low_complexity 1 23 0 2139 102 3 7 chr4 179747343 179747646 -4541016 + AluSx SINE Alu 1 302 -10 201 327 75 9 chr4 179748400 179748507 -4540155 + L2 LINE L2 2858 2971 -301 260 292 0 0 chr4 179748576 179748648 -4540014 + MLT1J LTR MaLR 1 72 -439 673 298 67 13 chr4 179748828 179749053 -4539609 + MIR SINE MIR 22 258 -4 245 155 0 35 chr4 179749273 179749331 -4539331 + (TAA)n Simple_repeat Simple_repeat 1 56 0 1903 242 34 44 chr4 179750390 179751006 -4537656 + MER90 LTR ERV1 5 614 0 2234 82 7 0 chr4 179751076 179751369 -4537293 - AluSg SINE Alu -15 295 1 300 292 148 0 chr4 179751552 179751788 -4536874 - L1ME4a LINE L1 -174 5947 5677 249 306 94 24 chr4 179751758 179751928 -4536734 + L1MC/D LINE L1 5667 5848 -1960 * 2009 101 31 0 chr4 179752107 179752394 -4536268 - AluSq SINE Alu -15 298 3 1737 166 0 0 chr4 179752493 179752777 -4535885 - AluJb SINE Alu -28 284 1 1821 160 3 0 chr4 179752897 179753203 -4535459 + AluJb SINE Alu 1 307 -5 21 82 0 0 chr4 179753470 179753519 -4535143 + AT_rich Low_complexity Low_complexity 1 49 0 411 241 185 60 chr4 179753591 179753671 -4534991 - MER2 DNA MER2_type -6 339 270 1951 117 9 25 chr4 179753671 179753988 -4534674 + AluSx SINE Alu 1 312 0 411 241 185 60 chr4 179753988 179754172 -4534490 - MER2 DNA MER2_type -75 270 42 647 144 52 81 chr4 179754528 179754701 -4533961 - MER1B DNA MER1_type -105 192 25 358 196 98 11 chr4 179754721 179754813 -4533849 + MER6 DNA MER2_type 44 864 -1 1106 175 0 0 chr4 179754861 179755027 -4533635 - FRAM SINE Alu 0 166 1 2304 99 0 0 chr4 179755509 179755811 -4532851 + AluSx SINE Alu 1 302 -10 25 75 0 0 chr4 179756168 179756221 -4532441 + AT_rich Low_complexity Low_complexity 1 53 0 1728 276 27 19 chr4 179756440 179757067 -4531595 + L1M4 LINE L1 4392 5023 -1123 668 162 162 0 chr4 179757068 179757185 -4531477 + AluJo SINE Alu 2 137 -175 210 118 0 0 chr4 179757210 179757244 -4531418 + (GA)n Simple_repeat Simple_repeat 2 35 0 397 91 130 26 chr4 179757255 179757409 -4531253 + GA-rich Low_complexity Low_complexity 4 173 0 340 163 52 20 chr4 179757562 179757715 -4530947 + (CACAC)n Simple_repeat Simple_repeat 4 161 0 567 333 124 39 chr4 179758297 179759122 -4529540 + L2 LINE L2 865 1759 -1555 4349 142 177 26 chr4 179759160 179760155 -4528507 - MER11B LTR ERVK 0 1236 1 1193 271 113 18 chr4 179760159 179760609 -4528053 - L1MC/D LINE L1 -2062 5746 5254 252 156 325 0 chr4 179760731 179760808 -4527854 - L1ME4a LINE L1 0 6121 6020 21 36 0 0 chr4 179762245 179762273 -4526389 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr4 179763152 179763196 -4525466 + AT_rich Low_complexity Low_complexity 1 44 0 409 315 8 24 chr4 179763296 179763423 -4525239 - L2 LINE L2 -5 3267 3143 988 245 120 24 chr4 179763429 179763842 -4524820 - MLT1J LTR MaLR -7 504 22 225 267 120 27 chr4 179764136 179764211 -4524451 - MIR SINE MIR -103 159 78 * 441 294 138 19 chr4 179764204 179764432 -4524230 - MIR SINE MIR -4 258 4 2027 138 3 3 chr4 179764553 179764851 -4523811 - AluSx SINE Alu -11 301 4 25 31 0 0 chr4 179764913 179764945 -4523717 + AT_rich Low_complexity Low_complexity 1 32 0 1794 158 39 0 chr4 179765241 179765520 -4523142 + AluSx SINE Alu 1 290 -22 2280 68 3 10 chr4 179766369 179766661 -4522001 - AluSc SINE Alu -19 290 1 646 259 139 24 chr4 179767081 179767413 -4521249 + L2 LINE L2 2131 2500 -814 27 0 0 0 chr4 179768062 179768089 -4520573 + AT_rich Low_complexity Low_complexity 1 27 0 2431 61 3 16 chr4 179768151 179768463 -4520199 + AluY SINE Alu 1 308 -3 236 261 183 14 chr4 179769536 179769678 -4518984 + L1ME LINE L1 5733 5898 -223 232 305 67 9 chr4 179769845 179769950 -4518712 - MIR SINE MIR -74 188 78 1792 165 20 0 chr4 179770213 179770510 -4518152 - AluJb SINE Alu -9 303 1 305 303 61 45 chr4 179771044 179771242 -4517420 + L1ME4a LINE L1 5714 5914 -207 222 267 178 15 chr4 179771671 179771777 -4516885 + MIR SINE MIR 16 123 -85 231 139 25 13 chr4 179772037 179772116 -4516546 + (TTGTG)n Simple_repeat Simple_repeat 4 83 0 318 279 59 52 chr4 179772854 179772990 -4515672 - MIR SINE MIR -122 140 4 677 213 33 60 chr4 179773299 179773389 -4515273 - MER58A DNA MER1_type -2198 222 138 1976 129 0 29 chr4 179773389 179773700 -4514962 - AluJo SINE Alu -10 302 1 677 213 33 60 chr4 179773700 179773792 -4514870 - MER58A DNA MER1_type -2282 138 45 353 189 142 47 chr4 179775239 179775345 -4513317 - L1ME3 LINE L1 -1 6161 6046 2104 135 10 0 chr4 179775523 179775827 -4512835 - AluJo SINE Alu -5 307 1 240 269 0 0 chr4 179775983 179776035 -4512627 - L2 LINE L2 -11 3261 3210 231 125 0 0 chr4 179776259 179776299 -4512363 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 590 129 242 0 chr4 179776501 179776625 -4512037 - L1MB3 LINE L1 -7 6176 6023 244 235 92 41 chr4 179776956 179777054 -4511608 - L2 LINE L2 -33 3280 3178 892 176 7 0 chr4 179777082 179777235 -4511427 - Tigger7 DNA MER2_type -19 2568 2415 497 135 14 0 chr4 179777231 179777305 -4511357 - Tigger7 DNA MER2_type -424 309 235 * 226 230 115 26 chr4 179777364 179777477 -4511185 + L1ME4a LINE L1 5995 6117 -4 281 182 23 136 chr4 179778048 179778180 -4510482 + MLT1H LTR MaLR 431 547 -2 2174 108 7 0 chr4 179778443 179778738 -4509924 + AluSg SINE Alu 1 297 -13 2106 128 7 10 chr4 179778753 179779057 -4509605 + AluSq SINE Alu 1 303 -10 2430 70 3 13 chr4 179779311 179779623 -4509039 + AluY SINE Alu 1 309 -2 997 78 8 0 chr4 179780428 179780556 -4508106 + AluSg SINE Alu 2 130 -180 784 135 17 22 chr4 179780950 179781128 -4507534 + CT-rich Low_complexity Low_complexity 2 178 0 2133 75 14 14 chr4 179782024 179782317 -4506345 + AluSq SINE Alu 1 293 -20 2882 138 13 17 chr4 179782421 179782579 -4506083 + L1MC1 LINE L1 5858 6015 -318 2383 70 17 0 chr4 179782579 179782880 -4505782 - AluSg SINE Alu -4 306 1 2882 138 13 17 chr4 179782880 179783199 -4505463 + L1MC1 LINE L1 6015 6333 0 2459 48 0 3 chr4 179783945 179784234 -4504428 + AluY SINE Alu 21 308 -3 264 298 112 28 chr4 179785659 179785837 -4502825 - MIR SINE MIR -35 227 35 1772 169 7 7 chr4 179786140 179786448 -4502214 + AluJo SINE Alu 1 308 -4 256 291 31 110 chr4 179787331 179787458 -4501204 - L2 LINE L2 0 3272 3156 219 236 81 130 chr4 179788315 179788438 -4500224 - L2 LINE L2 -25 3288 3172 337 302 53 28 chr4 179789480 179789662 -4499000 - MIR SINE MIR -61 201 18 299 148 0 16 chr4 179790032 179790093 -4498569 + (TTC)n Simple_repeat Simple_repeat 1 60 0 2292 70 3 0 chr4 179790418 179790743 -4497919 + AluSp SINE Alu 1 326 0 2339 94 0 7 chr4 179791329 179791628 -4497034 + AluSx SINE Alu 1 297 -15 2032 134 0 7 chr4 179792527 179792825 -4495837 - AluSq SINE Alu -17 296 1 2232 98 22 35 chr4 179792868 179793185 -4495477 - AluSq SINE Alu 0 313 1 186 133 0 0 chr4 179793437 179793467 -4495195 + (TG)n Simple_repeat Simple_repeat 2 31 0 2038 104 11 4 chr4 179794129 179794407 -4494255 + AluSx SINE Alu 1 280 -32 183 80 0 0 chr4 179794407 179794432 -4494230 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 27 29 0 0 chr4 179794865 179794899 -4493763 + AT_rich Low_complexity Low_complexity 1 34 0 382 289 78 8 chr4 179795002 179795130 -4493532 - MIR3 SINE MIR -5 203 67 396 0 0 0 chr4 179795727 179795771 -4492891 + (TTA)n Simple_repeat Simple_repeat 2 45 0 2101 131 0 0 chr4 179795773 179796056 -4492606 - AluSx SINE Alu -29 283 1 204 238 0 38 chr4 179796274 179796354 -4492308 + G-rich Low_complexity Low_complexity 5 81 0 2024 112 0 0 chr4 179796971 179797240 -4491422 - AluSg SINE Alu -24 286 18 4102 175 89 22 chr4 179797435 179798242 -4490420 - MER21B LTR ERV1 0 863 3 323 177 76 51 chr4 179798304 179798383 -4490279 + L2 LINE L2 3228 3308 -5 631 254 140 22 chr4 179798471 179798699 -4489963 + MIR SINE MIR 1 255 -7 722 139 121 4 chr4 179798869 179798923 -4489739 + LTR54B LTR ERV1 3 49 -461 192 77 0 0 chr4 179798923 179798949 -4489713 + (CAGAC)n Simple_repeat Simple_repeat 4 29 0 722 139 121 4 chr4 179798949 179799166 -4489496 + LTR54B LTR ERV1 49 378 -132 3789 119 50 2 chr4 179799166 179799747 -4488915 - MER4B LTR ERV1 0 601 1 718 161 42 0 chr4 179799747 179799877 -4488785 + LTR54 LTR ERV1 375 510 0 2252 90 0 72 chr4 179800071 179800406 -4488256 - AluSq SINE Alu -2 311 1 2490 174 87 8 chr4 179800720 179801192 -4487470 + LTR22 LTR ERVK 1 509 0 789 124 0 8 chr4 179801311 179801432 -4487230 - MER41A LTR ERV1 0 554 435 1035 87 0 0 chr4 179801432 179801558 -4487104 + AluY SINE Alu 1 126 -185 198 0 0 0 chr4 179801586 179801608 -4487054 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 1726 135 51 36 chr4 179801725 179801991 -4486671 - LTR56 LTR ERV1 -107 338 65 2099 112 14 0 chr4 179801991 179802276 -4486386 + AluSx SINE Alu 1 289 -23 1726 135 51 36 chr4 179802276 179802342 -4486320 - LTR56 LTR ERV1 -380 65 1 1681 144 35 25 chr4 179802471 179802756 -4485906 - AluJo SINE Alu -20 292 5 3732 130 33 12 chr4 179802825 179803408 -4485254 - LTR49 LTR ERV1 0 595 1 1555 205 42 32 chr4 179803910 179804319 -4484343 - MER49 LTR ERV1 0 923 310 906 249 145 43 chr4 179804478 179804575 -4484087 - MER119 DNA MER1_type -149 434 348 1475 166 13 67 chr4 179804575 179804889 -4483773 - AluJo SINE Alu -15 297 1 906 249 145 43 chr4 179804889 179804974 -4483688 - MER119 DNA MER1_type -235 348 273 2304 82 0 16 chr4 179804974 179805279 -4483383 - AluSg SINE Alu -10 300 1 906 249 145 43 chr4 179805279 179805489 -4483173 - MER119 DNA MER1_type -310 273 1 280 262 58 52 chr4 179805660 179805832 -4482830 - L1M4 LINE L1 -2636 3510 3338 268 31 0 0 chr4 179805969 179806001 -4482661 + (TTTA)n Simple_repeat Simple_repeat 1 60 0 1524 104 0 0 chr4 179806001 179806203 -4482459 - AluSg/x SINE Alu -1 313 81 438 265 147 29 chr4 179806234 179806821 -4481841 - L1M4 LINE L1 -3083 3063 2401 268 270 17 26 chr4 179806870 179806985 -4481677 - L1M4 LINE L1 -3840 2306 2193 446 244 169 0 chr4 179807457 179807629 -4481033 - L1ME LINE L1 -350 5771 5571 2263 117 7 0 chr4 179807714 179808022 -4480640 + AluSx SINE Alu 1 310 -2 582 303 109 0 chr4 179808207 179808474 -4480188 - L1ME LINE L1 -2210 5598 5303 344 299 96 15 chr4 179809166 179809363 -4479299 - L1MC4 LINE L1 -23 8019 7807 744 128 26 26 chr4 179809368 179809485 -4479177 - FLAM_A SINE Alu -20 122 6 280 253 116 34 chr4 179809751 179809897 -4478765 + MARNA DNA Mariner 327 484 -102 203 136 45 0 chr4 179812199 179812243 -4476419 + (TA)n Simple_repeat Simple_repeat 2 47 0 1240 126 10 20 chr4 179812415 179812613 -4476049 - AluJb SINE Alu -18 294 99 1716 179 13 19 chr4 179813341 179813653 -4475009 - AluJo SINE Alu -2 310 1 2217 51 20 7 chr4 179814272 179814564 -4474098 - AluY SINE Alu -12 299 4 1982 146 7 0 chr4 179814567 179814868 -4473794 - AluSx SINE Alu -9 303 1 328 269 0 0 chr4 179815954 179816021 -4472641 + MIR SINE MIR 83 149 -59 2316 63 7 3 chr4 179816136 179816423 -4472239 - AluSx SINE Alu -12 300 13 347 279 81 15 chr4 179816500 179816636 -4472026 + MIR SINE MIR 15 159 -103 2106 91 3 11 chr4 179816732 179817044 -4471618 + AluY SINE Alu 1 310 0 295 242 110 11 chr4 179817113 179817204 -4471458 + MIR SINE MIR 157 256 -6 2266 90 14 0 chr4 179817353 179817641 -4471021 - AluSx SINE Alu -20 292 1 802 235 27 32 chr4 179817985 179818206 -4470456 - MIR SINE MIR 0 262 43 32259 100 13 32 chr4 179818355 179820870 -4467792 + L1PA7 LINE L1 377 2937 -3217 2440 87 0 3 chr4 179820870 179821179 -4467483 + AluY SINE Alu 1 308 -3 32259 100 13 32 chr4 179821179 179821497 -4467165 + L1PA7 LINE L1 2937 3259 -2895 2148 123 7 3 chr4 179821497 179821798 -4466864 + AluSq SINE Alu 1 302 -11 32259 100 13 32 chr4 179821798 179821881 -4466781 + L1PA7 LINE L1 3259 3342 -2812 4104 89 0 6 chr4 179821881 179822395 -4466267 + MER9 LTR ERVK 1 511 0 32259 100 13 32 chr4 179822395 179825369 -4463293 + L1PA7 LINE L1 3342 6153 -1 2149 106 0 7 chr4 179825373 179825656 -4463006 + AluSg SINE Alu 1 281 -29 296 119 0 134 chr4 179825692 179825759 -4462903 + MER4D LTR ERV1 615 672 -200 1803 121 0 4 chr4 179825828 179826131 -4462531 - AluSx SINE Alu 0 312 37 1683 106 13 4 chr4 179826321 179826558 -4462104 - AluSp SINE Alu -74 239 1 2131 137 38 19 chr4 179826581 179826946 -4461716 + LTR8 LTR ERV1 312 683 -8 229 189 158 32 chr4 179827012 179827107 -4461555 - LTR35 LTR ERV1 -69 549 443 302 250 23 11 chr4 179827180 179827268 -4461394 - LTR43 LTR ERV1 -325 277 189 997 157 43 5 chr4 179827461 179827646 -4461016 + MER4D LTR ERV1 679 870 -33 2462 58 0 13 chr4 179878430 179878742 -4409920 - AluY SINE Alu -3 308 1 249 83 0 0 chr4 179879992 179880028 -4408634 + (TG)n Simple_repeat Simple_repeat 2 37 0 349 299 68 0 chr4 179882068 179882185 -4406477 + L2 LINE L2 3164 3288 -25 28 0 0 0 chr4 179882774 179882802 -4405860 + GC_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 179882840 179882861 -4405801 + GC_rich Low_complexity Low_complexity 1 21 0 213 65 0 0 chr4 179883533 179883564 -4405098 + (TG)n Simple_repeat Simple_repeat 1 31 0 32 26 0 0 chr4 179883662 179883701 -4404961 + AT_rich Low_complexity Low_complexity 1 39 0 1679 58 5 59 chr4 179883755 179884038 -4404624 - L1P LINE L1 -731 5423 5152 516 250 79 52 chr4 179884133 179884353 -4404309 - MIR SINE MIR -1 261 32 2098 118 3 3 chr4 179884353 179884658 -4404004 - AluSq SINE Alu -8 305 1 516 250 79 52 chr4 179884658 179884689 -4403973 - MIR SINE MIR -230 32 3 336 333 14 14 chr4 179885867 179886008 -4402654 - L2 LINE L2 -6 3307 3167 1619 177 3 10 chr4 179887801 179888100 -4400562 + AluJo SINE Alu 1 297 -15 323 283 126 25 chr4 179888681 179888840 -4399822 + MIR SINE MIR 85 259 -3 202 325 169 0 chr4 179888851 179888934 -4399728 - MIR3 SINE MIR -54 154 58 1771 141 23 23 chr4 179889084 179889389 -4399273 - AluJo SINE Alu -7 305 1 342 129 17 25 chr4 179889594 179889663 -4398999 + FLAM SINE Alu 70 125 -8 1774 166 0 22 chr4 179890197 179890516 -4398146 + AluJb SINE Alu 1 312 0 679 171 77 98 chr4 179890966 179891301 -4397361 - MER69 DNA AcHobo 0 2526 2229 991 168 134 0 chr4 179891301 179891533 -4397129 - L1MC3 LINE L1 -1 7784 7522 1374 141 5 0 chr4 179891707 179891920 -4396742 - L1MC3 LINE L1 -235 7550 7337 261 162 176 0 chr4 179891920 179891988 -4396674 - MER69 DNA AcHobo -289 2237 2158 1513 312 54 20 chr4 179892032 179892622 -4396040 - MER69 DNA AcHobo -1911 615 6 279 317 130 8 chr4 179893248 179893371 -4395291 + MIR SINE MIR 14 151 -111 382 235 25 25 chr4 179893374 179893493 -4395169 - MER104 DNA Tc2 -3 177 59 893 244 67 60 chr4 179893495 179893810 -4394852 - MLT1H LTR MaLR -2 547 231 232 214 0 0 chr4 179893876 179893918 -4394744 - MIR SINE MIR -205 57 16 252 322 17 26 chr4 179894143 179894258 -4394404 + MIR SINE MIR 148 261 -1 1944 127 3 0 chr4 179894781 179895100 -4393562 - AluSx SINE Alu 0 320 1 359 301 130 16 chr4 179895766 179895889 -4392773 + MIR3 SINE MIR 10 146 -62 294 215 0 63 chr4 179896033 179896112 -4392550 - L2 LINE L2 -1 3271 3198 225 288 0 14 chr4 179897091 179897164 -4391498 - LTR67 LTR ERVL -14 543 472 2038 97 21 14 chr4 179897630 179897919 -4390743 - AluSx SINE Alu -19 293 3 184 286 86 100 chr4 179898065 179898285 -4390377 - L2 LINE L2 -466 2848 2632 * 208 292 56 56 chr4 179898276 179898437 -4390225 + MIR3 SINE MIR 43 203 -5 1469 187 19 45 chr4 179898536 179898846 -4389816 - AluJo SINE Alu 0 302 1 262 186 23 0 chr4 179898876 179898919 -4389743 - Alu SINE Alu -256 44 1 524 244 71 95 chr4 179898919 179899202 -4389460 - L2 LINE L2 -10 3303 3028 2085 83 0 0 chr4 179899341 179899606 -4389056 + AluY SINE Alu 24 288 -23 234 162 0 0 chr4 179899771 179899808 -4388854 - MIR SINE MIR -224 38 2 404 273 53 8 chr4 179899914 179900046 -4388616 - MIR3 SINE MIR -26 182 45 1355 189 21 96 chr4 179900189 179900243 -4388419 + MLT1B LTR MaLR 1 57 -333 2120 95 0 3 chr4 179900243 179900549 -4388113 - AluSx SINE Alu 0 307 3 1355 189 21 96 chr4 179900549 179900912 -4387750 + MLT1B LTR MaLR 57 388 -2 592 293 170 0 chr4 179901307 179901519 -4387143 + MIR SINE MIR 15 262 0 201 97 0 65 chr4 179902247 179902309 -4386353 + (CGGGG)n Simple_repeat Simple_repeat 5 62 0 23 54 0 0 chr4 179902517 179902554 -4386108 + GC_rich Low_complexity Low_complexity 1 37 0 25 51 0 0 chr4 179902727 179902766 -4385896 + GC_rich Low_complexity Low_complexity 1 39 0 1947 121 20 3 chr4 179903978 179904275 -4384387 + AluSx SINE Alu 4 305 -7 1608 160 13 19 chr4 179905636 179905943 -4382719 - AluJb SINE Alu -7 305 1 509 133 0 0 chr4 179906165 179906248 -4382414 + FLAM_A SINE Alu 60 142 0 230 238 0 0 chr4 179906386 179906449 -4382213 - L1ME4a LINE L1 0 6121 6059 513 230 115 28 chr4 179906458 179906710 -4381952 - L1ME4a LINE L1 -105 6016 5743 606 236 199 16 chr4 179907273 179907464 -4381198 - MIR SINE MIR -35 227 2 1948 98 79 0 chr4 179907518 179907795 -4380867 + AluSg SINE Alu 1 299 -11 1481 71 0 0 chr4 179908082 179908265 -4380397 + AluY SINE Alu 1 183 -128 2243 103 0 0 chr4 179908956 179909258 -4379404 + AluSx SINE Alu 1 302 -10 332 210 20 60 chr4 179910896 179910996 -4377666 + Charlie7 DNA MER1_type 6 101 -2511 180 234 117 90 chr4 179911334 179911445 -4377217 + L2 LINE L2 3197 3310 -3 313 225 113 81 chr4 179911650 179911810 -4376852 + L1MC5 LINE L1 7753 7917 -44 1673 128 25 7 chr4 179912266 179912547 -4376115 - AluSx SINE Alu -13 299 14 321 231 34 51 chr4 179913799 179913916 -4374746 - L1ME4a LINE L1 -30 6091 5977 2417 59 0 3 chr4 179914085 179914390 -4374272 - AluY SINE Alu -7 304 1 225 0 0 0 chr4 179915344 179915369 -4373293 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 199 289 108 60 chr4 179916093 179916176 -4372486 - L2 LINE L2 -2 3270 3184 1536 196 37 25 chr4 179916554 179916976 -4371686 - L1MB4 LINE L1 0 6180 5717 2280 78 0 13 chr4 179916987 179917293 -4371369 + AluY SINE Alu 1 302 -9 232 335 77 26 chr4 179917437 179917592 -4371070 + MIR SINE MIR 82 244 -18 210 37 0 0 chr4 179917650 179917677 -4370985 + (CCTAT)n Simple_repeat Simple_repeat 1 27 0 1115 246 71 77 chr4 179917879 179918557 -4370105 + L1MEc LINE L1 1598 2271 -4125 266 219 298 18 chr4 179918627 179918741 -4369921 + L1MEc LINE L1 2650 2795 -3420 359 214 89 18 chr4 179918753 179918865 -4369797 + L1MC4a LINE L1 5904 6023 -1785 1902 122 25 3 chr4 179919054 179919340 -4369322 - AluSx SINE Alu -17 295 4 370 250 177 24 chr4 179919345 179919509 -4369153 + L1ME LINE L1 5620 5808 -313 2131 117 0 7 chr4 179919658 179919965 -4368697 - AluSx SINE Alu -7 305 1 300 392 99 11 chr4 179921433 179921696 -4366966 - L2 LINE L2 -96 3176 2891 285 277 108 38 chr4 179921849 179922170 -4366492 + LTR16B LTR ERVL 65 447 -3 246 315 131 44 chr4 179922202 179922773 -4365889 - L2 LINE L2 -558 2756 2136 10677 159 56 20 chr4 179922822 179926098 -4362564 + L1M1 LINE L1 22 4536 -3029 282 29 0 0 chr4 179926421 179926456 -4362206 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 999 239 279 14 chr4 179926523 179927192 -4361470 + L1MC4a LINE L1 5318 6164 -1644 2349 76 0 3 chr4 179927292 179927596 -4361066 + AluSc SINE Alu 1 303 -6 2115 75 0 7 chr4 179927712 179928026 -4360636 + AluY SINE Alu 1 312 0 1342 148 0 0 chr4 179929041 179929251 -4359411 - AluJo SINE Alu -18 294 85 215 235 98 0 chr4 179929380 179929431 -4359231 + L2 LINE L2 3212 3267 -5 3488 152 109 78 chr4 179929978 179930536 -4358126 + L1MB3 LINE L1 5275 5871 -312 1934 98 0 82 chr4 179930536 179930864 -4357798 + AluSx SINE Alu 1 301 -11 3488 152 109 78 chr4 179930864 179931176 -4357486 + L1MB3 LINE L1 5871 6172 -11 3250 167 68 24 chr4 179931195 179931871 -4356791 + L1MB7 LINE L1 5450 6155 -29 525 228 8 0 chr4 179932875 179932998 -4355664 + L1MA6 LINE L1 6177 6300 0 1575 194 30 12 chr4 179933053 179933388 -4355274 - MER58B DNA MER1_type 0 341 1 315 274 55 61 chr4 179934148 179934312 -4354350 + L1ME LINE L1 5518 5680 -441 215 185 167 0 chr4 179935043 179935097 -4353565 - MIR SINE MIR -70 192 130 384 211 13 0 chr4 179935530 179935606 -4353056 - L1MC4 LINE L1 -1 8041 7965 243 0 0 0 chr4 179935613 179935640 -4353022 + (TG)n Simple_repeat Simple_repeat 2 28 0 617 234 58 6 chr4 179935641 179935812 -4352850 - L1MC4 LINE L1 -170 7872 7693 293 241 123 49 chr4 179935821 179935983 -4352679 - MER112 DNA MER1_type -70 190 17 700 194 30 0 chr4 179936008 179936142 -4352520 - MER5A DNA MER1_type 0 189 52 321 274 35 64 chr4 179936145 179936317 -4352345 - MIR SINE MIR -65 197 39 1978 91 56 0 chr4 179936451 179936736 -4351926 + AluSg SINE Alu 1 301 -9 30 0 0 0 chr4 179937757 179937787 -4350875 + GC_rich Low_complexity Low_complexity 1 30 0 255 297 78 3 chr4 179938203 179938313 -4350349 + MIR SINE MIR 39 151 -57 787 200 29 0 chr4 179938353 179938523 -4350139 + L1M4 LINE L1 4938 5112 -1034 715 110 66 7 chr4 179938523 179938659 -4350003 + L1MB4 LINE L1 6036 6179 -1 243 200 0 0 chr4 179938973 179939028 -4349634 - L1PB1 LINE L1 -1 6150 6096 2342 74 0 3 chr4 179939028 179939338 -4349324 - AluY SINE Alu -2 309 1 489 133 0 24 chr4 179939346 179939429 -4349233 - AluS SINE Alu -2 307 227 2183 130 0 21 chr4 179939433 179939771 -4348891 + Harlequin LTR ERV1 661 991 -7408 29670 75 6 6 chr4 179939778 179943562 -4345100 + Harlequin LTR ERV1 1164 4944 -3455 768 177 33 43 chr4 179943563 179943868 -4344794 + Harlequin LTR ERV1 840 1141 -5755 * 9648 115 17 13 chr4 179943864 179946035 -4342627 + pTR5 LTR ERV1 504 8399 0 343 260 10 0 chr4 179946035 179946131 -4342531 + LTR30 LTR ERV1 546 642 -80 1521 98 5 9 chr4 179946134 179946358 -4342304 + pTR5 LTR ERV1 172 394 -2044 2404 158 38 16 chr4 179946485 179946928 -4341734 - MLT2C2 LTR ERVL -11 453 1 352 233 35 12 chr4 179946931 179947017 -4341645 - MLT1K LTR MaLR -373 215 128 198 347 99 8 chr4 179947058 179947179 -4341483 - MIR3 SINE MIR -76 132 1 3828 142 67 28 chr4 179947812 179948351 -4340311 + MER50 LTR ERV1 3 576 -158 2787 6 0 0 chr4 179948351 179948662 -4340000 - AluY SINE Alu 0 311 1 3828 142 67 28 chr4 179948662 179948811 -4339851 + MER50 LTR ERV1 576 718 -16 1638 149 29 0 chr4 179949218 179949493 -4339169 - AluJo SINE Alu -29 283 1 393 309 143 22 chr4 179951073 179951296 -4337366 - L2 LINE L2 -208 3064 2815 338 275 132 0 chr4 179951309 179951400 -4337262 + MER5A DNA MER1_type 7 109 -80 1692 148 38 3 chr4 179951420 179951711 -4336951 + AluJb SINE Alu 1 301 -11 461 333 69 16 chr4 179951790 179952036 -4336626 - L2 LINE L2 -556 2758 2500 337 282 39 19 chr4 179953411 179953514 -4335148 + MIR SINE MIR 47 151 -111 2256 91 0 0 chr4 179953551 179953859 -4334803 + AluSg SINE Alu 1 308 -2 416 299 164 53 chr4 179953874 179954349 -4334313 + L2 LINE L2 1425 1952 -1362 788 112 0 17 chr4 179954366 179954482 -4334180 - FLAM_C SINE Alu -28 115 2 1004 307 142 20 chr4 179954538 179955703 -4332959 + L2 LINE L2 1991 3303 -10 193 300 90 30 chr4 179955709 179955809 -4332853 + MIR SINE MIR 157 262 0 1760 161 3 0 chr4 179955905 179956196 -4332466 - AluJo SINE Alu -18 294 3 316 324 151 0 chr4 179956437 179956616 -4332046 + MIR SINE MIR 6 211 -51 5025 158 20 16 chr4 179957131 179958056 -4330606 + L1MB3 LINE L1 5254 6182 -1 2310 88 0 0 chr4 179958287 179958577 -4330085 + AluSp SINE Alu 9 291 -22 611 110 0 0 chr4 179958590 179958681 -4329981 - FLAM_A SINE Alu -51 91 1 2135 119 0 13 chr4 179959716 179960018 -4328644 - AluSx SINE Alu -14 298 1 427 118 15 0 chr4 179960092 179960160 -4328502 + L1MA8 LINE L1 6023 6091 -200 227 241 17 0 chr4 179960198 179960256 -4328406 + MIR SINE MIR 38 96 -112 2071 136 0 10 chr4 179960279 179960581 -4328081 - AluJb SINE Alu -13 299 1 188 284 20 20 chr4 179960716 179960818 -4327844 + L2 LINE L2 2918 3019 -253 218 222 95 0 chr4 179960966 179961029 -4327633 + L2 LINE L2 3245 3313 0 216 179 18 54 chr4 179961060 179961116 -4327546 + L3 LINE CR1 1503 1556 -21 1643 175 60 86 chr4 179962126 179962605 -4326057 - MLT1C LTR MaLR 0 467 1 2235 101 0 7 chr4 179962735 179963057 -4325605 + AluSp SINE Alu 1 320 0 1127 273 37 36 chr4 179963166 179963746 -4324916 - L2 LINE L2 -4 3309 2725 273 130 22 0 chr4 179963748 179963794 -4324868 + MSTB2 LTR MaLR 1 47 -410 1749 90 0 5 chr4 179963895 179964117 -4324545 + AluSg/x SINE Alu 65 285 -25 1124 220 331 5 chr4 179964615 179965056 -4323606 - MLT1G1 LTR MaLR 0 595 11 29 0 0 0 chr4 179965101 179965130 -4323532 + AT_rich Low_complexity Low_complexity 1 29 0 2460 231 43 16 chr4 179965228 179965803 -4322859 + MER69 DNA AcHobo 2 592 -634 371 150 0 38 chr4 179965807 179965887 -4322775 + L1MC4a LINE L1 6107 6183 -1625 * 1067 217 32 7 chr4 179965876 179966157 -4322505 + L1M4 LINE L1 4272 4559 -1587 378 342 36 10 chr4 179966277 179966473 -4322189 + MIR SINE MIR 11 211 -51 364 257 151 10 chr4 179966893 179967099 -4321563 - L3 LINE CR1 -572 1005 771 333 0 0 0 chr4 179969244 179969281 -4319381 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 211 238 0 0 chr4 179969355 179969397 -4319265 + (TAG)n Simple_repeat Simple_repeat 3 44 0 262 307 153 19 chr4 179969408 179969623 -4319039 - MIR SINE MIR -12 250 7 2750 33 0 0 chr4 179970139 179970445 -4318217 - AluY SINE Alu -5 306 1 420 254 105 0 chr4 179971801 179971915 -4316747 - MLT1J1 LTR MaLR -314 132 7 2426 80 0 19 chr4 179971957 179972269 -4316393 + AluSx SINE Alu 1 306 -6 2313 108 0 13 chr4 179972864 179973180 -4315482 + AluSx SINE Alu 1 312 0 2452 83 0 0 chr4 179973443 179973743 -4314919 - AluSg1 SINE Alu -9 300 1 334 320 126 24 chr4 179975458 179975664 -4312998 - MIR SINE MIR -2 260 34 339 193 35 61 chr4 179977083 179977197 -4311465 + L2 LINE L2 3162 3272 0 1873 170 24 11 chr4 179977305 179977681 -4310981 - L1MB4 LINE L1 0 6180 5800 352 89 0 0 chr4 179977681 179977726 -4310936 + AluSx SINE Alu 1 45 -256 1796 126 0 8 chr4 179977803 179978064 -4310598 + AluSx SINE Alu 47 305 -7 282 195 11 81 chr4 179978064 179978151 -4310511 - L1MB4 LINE L1 -363 5811 5731 630 292 79 52 chr4 179978151 179978289 -4310373 - L1ME4a LINE L1 -214 5907 5774 225 0 0 0 chr4 179978289 179978314 -4310348 + (TG)n Simple_repeat Simple_repeat 1 25 0 630 292 79 52 chr4 179978314 179978655 -4310007 - L1ME4a LINE L1 -347 5774 5415 975 268 76 70 chr4 179978700 179978768 -4309894 - L1ME4a LINE L1 -1476 4670 4604 2362 110 0 0 chr4 179978768 179979078 -4309584 - AluSx SINE Alu -2 310 1 975 268 76 70 chr4 179979078 179979425 -4309237 - L1ME4a LINE L1 -1542 4604 4260 1667 144 56 39 chr4 179979425 179979730 -4308932 - AluJo SINE Alu 0 312 3 975 268 76 70 chr4 179979730 179980226 -4308436 - L1ME4a LINE L1 -1886 4260 3753 21 0 0 0 chr4 179980341 179980362 -4308300 + AT_rich Low_complexity Low_complexity 1 21 0 764 144 12 75 chr4 179980505 179980665 -4307997 + MER21A LTR ERV1 13 162 -769 1967 160 0 0 chr4 179981720 179982013 -4306649 + AluSx SINE Alu 12 304 -8 603 227 141 46 chr4 179982707 179983239 -4305423 + LTR50 LTR ERVL 14 680 -115 2306 182 79 7 chr4 179983243 179983699 -4304963 + MLT1D LTR MaLR 12 500 -5 309 178 123 0 chr4 179983709 179983782 -4304880 + LTR50 LTR ERVL 710 791 -4 1686 159 24 17 chr4 179983816 179984105 -4304557 - AluJo SINE Alu -21 291 1 2137 112 4 0 chr4 179984222 179984520 -4304142 - AluSq SINE Alu 0 302 4 1770 152 36 24 chr4 179985098 179985428 -4303234 - MER44D DNA MER2_type -5 604 1 878 265 62 47 chr4 179985887 179986208 -4302454 - LTR40b LTR ERVL 0 462 137 2153 169 73 65 chr4 179986504 179986962 -4301700 + MLT2B1 LTR ERVL 1 462 -53 854 16 16 32 chr4 179986962 179987088 -4301574 + (TCTA)n Simple_repeat Simple_repeat 3 126 0 2153 169 73 65 chr4 179987088 179987143 -4301519 + MLT2B1 LTR ERVL 462 515 0 263 355 101 30 chr4 179987647 179987816 -4300846 + L2 LINE L2 3092 3272 0 635 144 68 113 chr4 179990389 179990521 -4298141 + L1MC5 LINE L1 7717 7837 -124 1926 111 48 35 chr4 179990521 179990810 -4297852 + AluSg1 SINE Alu 1 293 -16 635 144 68 113 chr4 179990810 179990899 -4297763 + L1MC5 LINE L1 7837 7928 -33 1725 154 46 14 chr4 179990899 179991179 -4297483 - AluJo SINE Alu -23 289 1 247 161 16 16 chr4 179991211 179991273 -4297389 + GA-rich Low_complexity Low_complexity 2 63 0 201 363 0 11 chr4 179991419 179991510 -4297152 - MER5A DNA MER1_type -93 96 7 1826 89 4 37 chr4 179992033 179992302 -4296360 + AluSx SINE Alu 40 299 -13 910 259 80 40 chr4 179992331 179992705 -4295957 + L1MC4a LINE L1 5523 5911 -1897 314 280 14 77 chr4 179992789 179992852 -4295810 + MER94 DNA DNA 1 66 -68 2297 104 0 3 chr4 179992852 179993149 -4295513 - AluSx SINE Alu -16 296 1 314 280 14 77 chr4 179993149 179993228 -4295434 + MER94 DNA DNA 66 134 0 269 314 51 22 chr4 179993606 179993743 -4294919 - L2 LINE L2 -45 3227 3087 200 108 0 27 chr4 179993794 179993831 -4294831 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 3397 75 30 2 chr4 179996751 179997192 -4291470 - MLT2A2 LTR ERVL 0 453 1 1436 141 44 8 chr4 179999026 179999275 -4289387 - MER2 DNA MER2_type -48 297 40 298 236 22 11 chr4 179999431 179999520 -4289142 + CT-rich Low_complexity Low_complexity 2 91 0 1708 165 7 17 chr4 180000401 180000698 -4287964 + AluJo SINE Alu 1 294 -18 570 152 248 0 chr4 180001570 180001715 -4286947 - MER5A DNA MER1_type -2 187 7 201 225 99 0 chr4 180002411 180002482 -4286180 - MIR SINE MIR -86 176 99 245 209 104 0 chr4 180002747 180002814 -4285848 + L1ME4a LINE L1 5941 6014 -107 236 185 0 0 chr4 180004110 180004164 -4284498 - L1MA8 LINE L1 0 6291 6238 934 141 7 0 chr4 180004218 180004367 -4284295 + L1MA8 LINE L1 6079 6228 -63 379 292 71 7 chr4 180004715 180004869 -4283793 - MER103 DNA DNA -1 165 2 811 183 0 0 chr4 180005118 180005249 -4283413 - FLAM_C SINE Alu 0 133 3 2310 95 7 3 chr4 180005259 180005555 -4283107 - AluSp SINE Alu -16 297 1 191 263 145 0 chr4 180005800 180005876 -4282786 + L2 LINE L2 3201 3287 -26 2407 99 0 0 chr4 180006145 180006448 -4282214 + AluSg SINE Alu 1 303 -7 369 0 0 0 chr4 180006677 180006718 -4281944 + (TG)n Simple_repeat Simple_repeat 1 41 0 2543 157 35 47 chr4 180006745 180007285 -4281377 - MER6A DNA MER2_type 0 605 -1 25 0 0 0 chr4 180007515 180007540 -4281122 + GC_rich Low_complexity Low_complexity 1 25 0 390 221 54 74 chr4 180007739 180007888 -4280774 + MER5B DNA MER1_type 1 146 -32 781 234 104 0 chr4 180007918 180008119 -4280543 - MER58A DNA MER1_type -2 222 1 372 243 45 18 chr4 180009568 180009679 -4278983 - MIR SINE MIR -58 150 37 2104 133 0 13 chr4 180011223 180011539 -4277123 + AluSx SINE Alu 1 312 0 2148 104 30 0 chr4 180011882 180012179 -4276483 - AluSx SINE Alu -6 306 1 187 216 0 0 chr4 180012750 180012787 -4275875 - L2 LINE L2 -44 3269 3233 2406 110 0 0 chr4 180012849 180013157 -4275505 - AluSg SINE Alu -2 308 1 286 340 34 20 chr4 180013235 180013382 -4275280 + L2 LINE L2 2917 3065 -207 213 211 0 0 chr4 180013410 180013462 -4275200 + (TCCA)n Simple_repeat Simple_repeat 3 54 0 2457 97 0 0 chr4 180013925 180014233 -4274429 - AluSx SINE Alu -4 308 1 2247 105 7 0 chr4 180014420 180014715 -4273947 - AluSq SINE Alu -14 299 3 288 321 22 8 chr4 180014770 180014904 -4273758 - MER5A DNA MER1_type -53 136 1 2386 86 3 0 chr4 180015553 180015854 -4272808 + AluSx SINE Alu 1 302 -10 323 316 94 18 chr4 180016298 180016469 -4272193 - MIR SINE MIR -32 230 47 420 306 96 16 chr4 180016606 180016920 -4271742 + LTR16B LTR ERVL 32 370 -94 1551 160 41 75 chr4 180017041 180017359 -4271303 + AluJo SINE Alu 3 309 -3 1487 124 62 11 chr4 180018429 180018703 -4269959 + MER33 DNA MER1_type 37 324 0 225 316 44 18 chr4 180018704 180018818 -4269844 + L2 LINE L2 3196 3312 -1 822 221 55 17 chr4 180018936 180019171 -4269491 + L2 LINE L2 2231 2474 -840 2221 114 0 3 chr4 180019239 180019569 -4269093 + AluSx SINE Alu 15 343 0 207 288 15 0 chr4 180019601 180019667 -4268995 + L2 LINE L2 2550 2616 -698 288 204 45 57 chr4 180020785 180020873 -4267789 - L2 LINE L2 0 3272 3186 2117 140 0 6 chr4 180021296 180021610 -4267052 + AluSx SINE Alu 1 312 0 2172 98 30 0 chr4 180021953 180022250 -4266412 - AluSx SINE Alu -6 306 1 2480 78 3 0 chr4 180023036 180023342 -4265320 + AluSp SINE Alu 2 308 -5 2843 60 14 0 chr4 180023726 180024076 -4264586 - THE1A LTR MaLR 0 355 1 23 0 0 0 chr4 180024251 180024274 -4264388 + AT_rich Low_complexity Low_complexity 1 23 0 336 285 188 39 chr4 180024467 180024723 -4263939 - L2 LINE L2 -5 3267 2974 243 173 0 0 chr4 180025386 180025438 -4263224 + CT-rich Low_complexity Low_complexity 1 52 0 377 226 22 7 chr4 180025591 180025728 -4262934 + CT-rich Low_complexity Low_complexity 2 140 0 195 42 0 0 chr4 180025731 180025755 -4262907 + (CATA)n Simple_repeat Simple_repeat 3 26 0 1596 162 41 4 chr4 180025755 180026021 -4262641 - AluJb SINE Alu -36 276 1 32 75 0 0 chr4 180027846 180027913 -4260749 + AT_rich Low_complexity Low_complexity 1 67 0 434 70 0 0 chr4 180027989 180028046 -4260616 + Alu SINE Alu 232 288 -24 235 214 43 71 chr4 180030651 180030721 -4257941 - MLT1B LTR MaLR -306 68 1 2255 108 0 0 chr4 180032072 180032360 -4256302 - AluSx SINE Alu -20 292 5 226 118 0 0 chr4 180032375 180032409 -4256253 + LTR51 LTR ERV1 263 296 -375 1508 68 0 0 chr4 180032489 180032681 -4255981 - L1PA4 LINE L1 -3 6152 5961 222 229 129 0 chr4 180033443 180033513 -4255149 - L2 LINE L2 0 3272 3194 225 0 0 0 chr4 180034110 180034135 -4254527 + (TA)n Simple_repeat Simple_repeat 1 25 0 1933 120 11 7 chr4 180034135 180034418 -4254244 - AluSx SINE Alu -28 284 1 399 306 67 6 chr4 180034920 180035100 -4253562 + MIR SINE MIR 22 212 -50 1419 199 144 29 chr4 180035527 180035903 -4252759 - L1MB8 LINE L1 -1 6177 5846 2039 142 0 7 chr4 180035903 180036205 -4252457 - AluJb SINE Alu -12 300 1 1419 199 144 29 chr4 180036205 180036422 -4252240 - L1MB8 LINE L1 -332 5846 5449 210 86 0 0 chr4 180037391 180037409 -4251253 + (TG)n Simple_repeat Simple_repeat 2 19 -17 1435 158 43 43 chr4 180037409 180037713 -4250949 - L1MA8 LINE L1 -1 6290 5987 210 86 0 0 chr4 180037713 180037729 -4250933 + (TG)n Simple_repeat Simple_repeat 18 36 0 212 288 136 15 chr4 180038710 180038842 -4249820 - L2 LINE L2 -11 3302 3155 2350 89 0 34 chr4 180041039 180041363 -4247299 - AluSq SINE Alu 0 313 1 332 262 170 0 chr4 180042984 180043125 -4245537 + MIR SINE MIR 23 187 -75 3227 28 11 0 chr4 180043904 180044441 -4244221 - L1PA4 LINE L1 -523 5632 5092 4211 32 36 6 chr4 180044441 180044963 -4243699 + L1PA4 LINE L1 5615 6155 0 1520 183 28 7 chr4 180045155 180045440 -4243222 - AluJo SINE Alu -9 303 13 1684 184 3 0 chr4 180048772 180049065 -4239597 + AluJo SINE Alu 1 294 -18 302 333 9 0 chr4 180049276 180049384 -4239278 - L2 LINE L2 -19 3294 3186 2061 117 0 0 chr4 180049518 180049784 -4238878 - AluSg SINE Alu -44 266 1 286 340 34 20 chr4 180049862 180050009 -4238653 + L2 LINE L2 2917 3065 -207 213 211 0 0 chr4 180050037 180050089 -4238573 + (TCCA)n Simple_repeat Simple_repeat 3 54 0 2285 121 3 0 chr4 180050552 180050859 -4237803 - AluSx SINE Alu -4 308 1 288 204 45 57 chr4 180051282 180051370 -4237292 + L2 LINE L2 3186 3272 0 357 306 32 24 chr4 180151935 180152059 -4136603 - MIR SINE MIR -109 153 29 230 212 30 30 chr4 180152124 180152190 -4136472 - MIR SINE MIR -14 248 183 405 338 6 45 chr4 180152308 180152465 -4136197 + MIR3 SINE MIR 30 180 -28 441 0 0 0 chr4 180152795 180152844 -4135818 + (TA)n Simple_repeat Simple_repeat 1 49 0 1968 114 0 0 chr4 180153162 180153417 -4135245 - AluSq SINE Alu -58 255 1 333 0 0 0 chr4 180153635 180153672 -4134990 + (CA)n Simple_repeat Simple_repeat 2 38 0 978 134 0 0 chr4 180153678 180153805 -4134857 - FLAM_C SINE Alu -6 127 1 231 278 0 0 chr4 180153941 180153995 -4134667 - L2 LINE L2 -13 3259 3206 210 305 34 0 chr4 180154140 180154199 -4134463 + L2 LINE L2 2631 2691 -623 294 316 111 74 chr4 180154240 180154620 -4134042 + L2 LINE L2 2876 3269 -3 19355 59 1 0 chr4 180154787 180157119 -4131543 - HERVK9 LTR ERVK -2556 3360 1027 18485 68 3 4 chr4 180157221 180159525 -4129137 + HERVK9 LTR ERVK 3422 5723 -193 889 233 9 0 chr4 180159639 180159854 -4128808 + AluSg/x SINE Alu 93 309 -3 997 147 87 42 chr4 180159858 180160152 -4128510 - MER4B LTR ERV1 -258 352 1 2057 182 75 0 chr4 180160180 180160542 -4128120 + MLT1B LTR MaLR 1 389 -1 452 305 66 23 chr4 180160727 180161120 -4127542 + L1M4 LINE L1 4023 4432 -1714 3649 156 37 15 chr4 180161253 180161475 -4127187 + L1MB2 LINE L1 5444 5660 -511 2439 68 0 13 chr4 180161475 180161786 -4126876 + AluY SINE Alu 1 307 -4 3649 156 37 15 chr4 180161786 180162236 -4126426 + L1MB2 LINE L1 5660 6131 -40 2238 125 0 0 chr4 180162236 180162531 -4126131 + AluSx SINE Alu 1 295 -17 700 183 17 0 chr4 180162549 180162664 -4125998 + FLAM_C SINE Alu 1 117 -26 513 41 27 0 chr4 180166268 180166341 -4122321 - AluY SINE Alu 0 309 235 409 264 98 59 chr4 180166647 180166901 -4121761 - L1M4 LINE L1 -2936 3210 2947 2118 99 7 20 chr4 180166954 180167246 -4121416 + AluSx SINE Alu 1 288 -24 499 198 63 20 chr4 180167260 180167456 -4121206 - L1MC5 LINE L1 -23 7938 7698 236 317 77 14 chr4 180167706 180167914 -4120748 - L1M4 LINE L1 -3632 2514 2294 1127 235 60 102 chr4 180167983 180168514 -4120148 - LTR67 LTR ERVL -1 556 48 599 211 55 0 chr4 180168821 180168949 -4119713 - AluJo SINE Alu -176 136 2 2092 131 0 0 chr4 180169073 180169364 -4119298 - AluSx SINE Alu -21 291 1 634 116 42 0 chr4 180169535 180169630 -4119032 + AluSg/x SINE Alu 184 282 -28 856 153 0 0 chr4 180169653 180169771 -4118891 + FLAM_C SINE Alu 1 118 -15 22 35 0 0 chr4 180169771 180169800 -4118862 + AT_rich Low_complexity Low_complexity 1 29 0 361 247 116 53 chr4 180169923 180170113 -4118549 - L1ME3A LINE L1 -7 6163 5962 396 301 59 25 chr4 180170208 180170444 -4118218 - L1MC5 LINE L1 -430 7531 7288 222 319 210 26 chr4 180171220 180171605 -4117057 + L2 LINE L2 2462 2917 -397 3045 148 32 36 chr4 180171767 180171858 -4116804 - L1MB3 LINE L1 -3 6180 6090 2713 141 17 48 chr4 180171858 180172334 -4116328 + LOR1b LTR ERV1 1 461 0 3045 148 32 36 chr4 180172334 180172524 -4116138 - L1MB3 LINE L1 -93 6090 5901 1931 170 10 0 chr4 180172524 180172824 -4115838 + AluSx SINE Alu 3 305 -7 3045 148 32 36 chr4 180172824 180173096 -4115566 - L1MB3 LINE L1 -282 5901 5628 2270 123 0 0 chr4 180173586 180173895 -4114767 - AluSx SINE Alu -3 309 1 903 176 117 27 chr4 180174365 180174587 -4114075 + Charlie1 DNA MER1_type 1 242 -2519 379 231 91 0 chr4 180174636 180174757 -4113905 + Charlie1 DNA MER1_type 2630 2761 0 535 320 104 38 chr4 180174912 180175228 -4113434 - L2 LINE L2 -7 3265 2929 642 230 148 0 chr4 180175231 180175385 -4113277 - MER112 DNA MER1_type -6 254 64 228 35 0 0 chr4 180175385 180175414 -4113248 + (TG)n Simple_repeat Simple_repeat 2 30 0 642 230 148 0 chr4 180175414 180175455 -4113207 - MER112 DNA MER1_type -196 64 30 715 216 96 124 chr4 180175925 180176007 -4112655 + MLT1J LTR MaLR 97 180 -331 246 32 0 0 chr4 180176007 180176038 -4112624 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 2158 85 4 4 chr4 180176038 180176319 -4112343 - AluSp SINE Alu -32 281 1 715 216 96 124 chr4 180176319 180176662 -4112000 + MLT1J LTR MaLR 178 511 0 2143 117 0 29 chr4 180176737 180177046 -4111616 - AluSp SINE Alu -13 300 1 1890 152 10 17 chr4 180177598 180177900 -4110762 - AluJb SINE Alu -12 300 1 188 274 95 48 chr4 180178658 180178742 -4109920 + MIR3 SINE MIR 90 177 -31 21 0 0 0 chr4 180178781 180178802 -4109860 + AT_rich Low_complexity Low_complexity 1 21 0 2522 44 7 0 chr4 180178812 180179105 -4109557 + AluY SINE Alu 1 295 -16 430 222 216 41 chr4 180179921 180180115 -4108547 + L1ME2 LINE L1 5928 6155 -9 6652 103 19 20 chr4 180180336 180180572 -4108090 - HERVK9 LTR ERVK -4857 1059 824 185 233 0 83 chr4 180180572 180180632 -4108030 - MER5B DNA MER1_type -69 109 55 6652 103 19 20 chr4 180180632 180181396 -4107266 - HERVK9 LTR ERVK -5092 824 1 3414 111 59 12 chr4 180181396 180181884 -4106778 - MER9 LTR ERVK 0 511 1 2126 108 7 0 chr4 180182211 180182530 -4106132 - AluSx SINE Alu 0 312 1 2479 65 0 0 chr4 180183514 180183820 -4104842 - AluY SINE Alu -5 306 1 23 0 0 0 chr4 180184833 180184856 -4103806 + AT_rich Low_complexity Low_complexity 1 23 0 372 224 37 0 chr4 180185417 180185524 -4103138 - L1M4 LINE L1 -946 5200 5090 313 263 40 59 chr4 180185543 180185695 -4102967 + L2 LINE L2 3152 3300 -13 189 121 0 0 chr4 180185835 180185868 -4102794 + (TTAAA)n Simple_repeat Simple_repeat 2 34 0 26 0 0 0 chr4 180185935 180185961 -4102701 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr4 180187648 180187676 -4100986 + AT_rich Low_complexity Low_complexity 1 28 0 293 293 12 0 chr4 180188247 180188329 -4100333 + MIR3 SINE MIR 98 180 -28 1959 125 7 0 chr4 180188350 180188657 -4100005 + AluJb SINE Alu 1 309 0 2186 124 3 0 chr4 180190659 180190958 -4097704 + AluSx SINE Alu 1 300 -12 845 114 0 8 chr4 180191162 180191293 -4097369 - MER9 LTR ERVK 0 511 382 202 240 0 20 chr4 180191735 180191785 -4096877 + A-rich Low_complexity Low_complexity 2 50 0 281 176 0 0 chr4 180192488 180192539 -4096123 + Tigger1 DNA MER2_type 9 59 -2359 789 263 29 12 chr4 180193330 180193570 -4095092 - MIR SINE MIR -9 253 10 613 217 91 20 chr4 180193939 180194137 -4094525 - MIR SINE MIR 0 262 51 395 250 79 36 chr4 180194170 180194310 -4094352 + L2 LINE L2 3162 3307 -6 660 272 92 55 chr4 180194518 180194977 -4093685 + LTR33 LTR ERVL 46 521 0 711 264 61 75 chr4 180194977 180195322 -4093340 - L3 LINE CR1 -38 1539 1200 3962 170 34 13 chr4 180195569 180196235 -4092427 - L1MB4 LINE L1 -3 6177 5494 1793 175 0 7 chr4 180196235 180196544 -4092118 - AluJb SINE Alu -5 307 1 3962 170 34 13 chr4 180196544 180196590 -4092072 - L1MB4 LINE L1 -686 5494 5450 673 181 26 26 chr4 180196606 180196761 -4091901 - L1MA10 LINE L1 0 6334 6180 347 305 57 0 chr4 180197086 180197191 -4091471 - MIR SINE MIR -73 189 79 3128 208 23 35 chr4 180197193 180197280 -4091382 + L1MB7 LINE L1 5101 5188 -996 1820 157 7 7 chr4 180197280 180197574 -4091088 + AluJb SINE Alu 1 294 -18 3128 208 23 35 chr4 180197574 180198476 -4090186 + L1MB7 LINE L1 5188 6171 -13 344 262 27 34 chr4 180200225 180200346 -4088316 - MIR SINE MIR -65 143 38 431 234 288 16 chr4 180202504 180202688 -4085974 + MIR SINE MIR 28 261 -1 245 355 161 5 chr4 180202929 180203115 -4085547 + L2 LINE L2 229 443 -2871 265 284 0 12 chr4 180203215 180203296 -4085366 + MIR SINE MIR 180 259 -3 624 380 19 24 chr4 180203448 180203864 -4084798 + L2 LINE L2 946 1359 -1955 2695 162 11 23 chr4 180203865 180204335 -4084327 + L1PB4 LINE L1 5689 6152 -4 631 114 45 30 chr4 180204374 180204506 -4084156 - L1MA8 LINE L1 0 6291 6158 216 275 88 33 chr4 180204571 180204662 -4084000 - L2 LINE L2 0 3313 3218 310 210 77 99 chr4 180204705 180204886 -4083776 - L2 LINE L2 -96 3217 3041 479 214 57 43 chr4 180204991 180205131 -4083531 - MIR SINE MIR -116 146 5 273 143 41 0 chr4 180207695 180207744 -4080918 - LTR16C LTR ERVL -370 121 71 2178 119 0 6 chr4 180208006 180208318 -4080344 - AluSx SINE Alu -2 310 1 441 0 0 0 chr4 180208909 180208958 -4079704 + (TA)n Simple_repeat Simple_repeat 1 49 0 817 170 0 0 chr4 180209173 180209308 -4079354 + FRAM SINE Alu 36 170 -6 1756 243 37 13 chr4 180209696 180210152 -4078510 - MLT1C LTR MaLR 0 467 1 461 245 275 20 chr4 180210267 180210467 -4078195 - MIR SINE MIR -3 259 9 854 177 69 20 chr4 180210628 180210831 -4077831 + Charlie5 DNA MER1_type 2373 2585 -27 194 303 13 13 chr4 180210914 180210990 -4077672 + MIR SINE MIR 98 173 -89 251 133 0 0 chr4 180211189 180211234 -4077428 - AluSc SINE Alu 0 299 255 22 0 0 0 chr4 180211585 180211607 -4077055 + AT_rich Low_complexity Low_complexity 1 22 0 2291 105 7 0 chr4 180211617 180211912 -4076750 + AluSg SINE Alu 1 297 -13 27 49 0 0 chr4 180212052 180212093 -4076569 + AT_rich Low_complexity Low_complexity 1 41 0 458 268 17 4 chr4 180212102 180212261 -4076401 - L1ME LINE L1 -285 5881 5717 216 0 0 0 chr4 180212276 180212300 -4076362 + (TG)n Simple_repeat Simple_repeat 2 25 0 453 295 124 37 chr4 180214933 180215174 -4073488 + MIR SINE MIR 1 262 0 2221 127 0 9 chr4 180215205 180215520 -4073142 - AluSx SINE Alu 0 312 1 2781 211 130 9 chr4 180215830 180216694 -4071968 + L1ME1 LINE L1 5146 6119 -47 2265 120 7 0 chr4 180216717 180217025 -4071637 - AluSx SINE Alu -2 310 1 1310 251 41 75 chr4 180217097 180217655 -4071007 + MER77 LTR ERV1 54 592 -13 219 233 0 0 chr4 180217836 180217879 -4070783 + (TG)n Simple_repeat Simple_repeat 2 44 0 2334 86 3 29 chr4 180218018 180218331 -4070331 + AluSq SINE Alu 1 305 -8 237 221 29 73 chr4 180218701 180218769 -4069893 - L2 LINE L2 -9 3263 3199 665 147 54 0 chr4 180218770 180218899 -4069763 - MER20 DNA MER1_type -83 136 1 561 256 35 74 chr4 180218899 180219128 -4069534 + Charlie2 DNA MER1_type 78 297 -2565 1514 206 128 7 chr4 180219155 180219704 -4068958 + Charlie2 DNA MER1_type 2240 2854 -8 180 0 0 0 chr4 180219751 180219771 -4068891 + (A)n Simple_repeat Simple_repeat 1 20 0 640 149 0 0 chr4 180220057 180220151 -4068511 - AluJ/FLAM SINE Alu -217 95 2 279 0 0 0 chr4 180220445 180220476 -4068186 + (CA)n Simple_repeat Simple_repeat 2 32 0 418 229 144 0 chr4 180220759 180220912 -4067750 - MER5B DNA MER1_type -3 175 1 427 286 87 6 chr4 180220949 180221110 -4067552 + MIR SINE MIR 59 232 -30 264 346 19 10 chr4 180221491 180221595 -4067067 - L2 LINE L2 -1 3271 3167 217 219 24 0 chr4 180221869 180221910 -4066752 - L2 LINE L2 -246 3067 3026 1868 164 28 14 chr4 180222293 180222653 -4066009 - MLT2D LTR ERVL -48 366 2 241 307 23 23 chr4 180222717 180222805 -4065857 + CT-rich Low_complexity Low_complexity 2 89 0 186 316 122 0 chr4 180222958 180223056 -4065606 - MIR3 SINE MIR -97 111 2 354 281 83 0 chr4 180223383 180223504 -4065158 - L2 LINE L2 -9 3263 3133 3317 104 27 47 chr4 180223913 180224269 -4064393 - L1MA3 LINE L1 0 6305 5944 2376 88 0 0 chr4 180224269 180224565 -4064097 - AluSx SINE Alu -12 300 5 3317 104 27 47 chr4 180224565 180224736 -4063926 - L1MA3 LINE L1 -361 5944 5787 2334 102 10 0 chr4 180224736 180225039 -4063623 - AluSx SINE Alu -6 306 1 3317 104 27 47 chr4 180225039 180225068 -4063594 - L1MA3 LINE L1 -518 5787 5759 244 243 57 150 chr4 180225326 180225466 -4063196 - MER5A DNA MER1_type -18 171 45 385 299 79 28 chr4 180225718 180225895 -4062767 + MIR SINE MIR 8 193 -69 2201 93 7 0 chr4 180226078 180226357 -4062305 - AluSx SINE Alu -31 281 1 183 129 0 0 chr4 180226521 180226552 -4062110 + (TTCCC)n Simple_repeat Simple_repeat 2 32 0 1721 172 14 7 chr4 180226688 180226978 -4061684 - AluJo SINE Alu -20 292 1 858 257 73 45 chr4 180227686 180228083 -4060579 + MLT1C LTR MaLR 59 466 -1 202 309 229 15 chr4 180228088 180228289 -4060373 + L2 LINE L2 3004 3247 -25 306 358 160 0 chr4 180228334 180228521 -4060141 - MIR SINE MIR -36 226 10 282 116 0 0 chr4 180228630 180228673 -4059989 + (TG)n Simple_repeat Simple_repeat 2 44 0 238 243 57 0 chr4 180228789 180228859 -4059803 + GA-rich Low_complexity Low_complexity 6 79 0 698 228 63 51 chr4 180229011 180229248 -4059414 + MLT1D LTR MaLR 7 246 -259 280 295 78 6 chr4 180229296 180229468 -4059194 + MLT1C LTR MaLR 373 462 -5 1463 157 64 30 chr4 180230627 180230894 -4057768 - AluJo SINE Alu -17 295 20 21 36 0 0 chr4 180231014 180231042 -4057620 + AT_rich Low_complexity Low_complexity 1 28 0 2116 130 0 0 chr4 180231042 180231327 -4057335 - AluSx SINE Alu -27 285 1 2194 105 17 3 chr4 180231329 180231623 -4057039 - AluSx SINE Alu -14 298 1 320 282 12 12 chr4 180231628 180231713 -4056949 + L1ME LINE L1 2453 2537 -3609 1627 139 23 50 chr4 180232036 180232337 -4056325 - AluJb SINE Alu -19 293 1 180 0 0 0 chr4 180232407 180232427 -4056235 + (CA)n Simple_repeat Simple_repeat 1 20 0 2477 54 3 3 chr4 180233266 180233564 -4055098 - AluSp SINE Alu -15 298 1 952 204 0 61 chr4 180234593 180234824 -4053838 + AluJo SINE Alu 87 303 -9 25 31 0 0 chr4 180235544 180235576 -4053086 + AT_rich Low_complexity Low_complexity 1 32 0 336 309 39 77 chr4 180235705 180235912 -4052750 + L1ME LINE L1 4783 4981 -1165 294 259 123 12 chr4 180236350 180236512 -4052150 + L1ME LINE L1 5488 5667 -454 342 0 0 0 chr4 180236557 180236595 -4052067 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 1705 153 80 0 chr4 180236597 180236885 -4051777 - AluSx SINE Alu -1 311 1 319 339 80 9 chr4 180237079 180237191 -4051471 + L2 LINE L2 3148 3267 -5 21 36 0 0 chr4 180237441 180237469 -4051193 + AT_rich Low_complexity Low_complexity 1 28 0 228 153 82 12 chr4 180238837 180238922 -4049740 + (CGCGG)n Simple_repeat Simple_repeat 1 91 0 230 0 33 0 chr4 180238950 180238980 -4049682 + (CCCG)n Simple_repeat Simple_repeat 4 34 0 226 325 138 8 chr4 180239242 180239365 -4049297 - MIR SINE MIR -25 237 99 419 162 14 0 chr4 180241689 180241763 -4046899 - MER116 DNA Mariner -1 79 5 2027 137 3 10 chr4 180243147 180243454 -4045208 + AluSx SINE Alu 1 305 -7 1866 172 39 11 chr4 180243459 180243814 -4044848 - MLT1A1 LTR MaLR 0 365 1 313 236 57 19 chr4 180245882 180245988 -4042674 + L1ME4a LINE L1 5954 6063 -58 1526 183 12 8 chr4 180246027 180246278 -4042384 + AluJo SINE Alu 1 252 -60 369 284 126 28 chr4 180246497 180246712 -4041950 + MIR SINE MIR 9 244 -18 268 105 0 0 chr4 180246920 180246958 -4041704 + Alu SINE Alu 1 38 -265 636 224 0 0 chr4 180246992 180247108 -4041554 - FLAM_A SINE Alu -21 121 6 2136 120 0 41 chr4 180247357 180247674 -4040988 - AluSx SINE Alu -8 304 1 517 294 114 9 chr4 180247686 180247914 -4040748 - MIR SINE MIR -2 260 9 502 348 91 26 chr4 180248266 180248608 -4040054 - L2 LINE L2 -409 2905 2542 2405 101 0 0 chr4 180250060 180250368 -4038294 - AluSx SINE Alu -4 308 1 22 56 0 0 chr4 180250574 180250610 -4038052 + AT_rich Low_complexity Low_complexity 1 36 0 6400 78 6 3 chr4 180250915 180252246 -4036416 - L1PA8A LINE L1 -18 6113 4772 2379 84 0 19 chr4 180252684 180252994 -4035668 + AluY SINE Alu 1 304 -7 987 298 13 0 chr4 180254046 180254284 -4034378 - MIR SINE MIR -1 261 21 491 101 13 0 chr4 180255516 180255595 -4033067 + (GA)n Simple_repeat Simple_repeat 1 80 0 22 0 0 0 chr4 180255860 180255882 -4032780 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr4 180256287 180256317 -4032345 + (T)n Simple_repeat Simple_repeat 1 30 0 597 301 19 19 chr4 180262757 180262966 -4025696 + MIR SINE MIR 8 216 -46 416 223 11 11 chr4 180264987 180265081 -4023581 + MER5A DNA MER1_type 13 106 -83 1445 181 48 7 chr4 180265423 180265716 -4022946 - AluJo SINE Alu -7 305 1 1340 117 0 0 chr4 180265843 180266031 -4022631 - AluSq SINE Alu -20 293 106 351 0 0 0 chr4 180266866 180266905 -4021757 + (TG)n Simple_repeat Simple_repeat 1 39 0 181 369 16 25 chr4 180266977 180267099 -4021563 + L2 LINE L2 3193 3313 0 403 306 161 17 chr4 180267375 180267728 -4020934 + Charlie8 DNA MER1_type 79 482 -1935 325 233 0 0 chr4 180267740 180267800 -4020862 + Charlie8 DNA MER1_type 1355 1414 -1003 757 249 78 81 chr4 180268390 180268836 -4019826 + MLT1L LTR MaLR 171 615 0 1816 71 75 0 chr4 180269883 180270163 -4018499 - AluY SINE Alu 0 310 12 23 0 0 0 chr4 180270166 180270189 -4018473 + AT_rich Low_complexity Low_complexity 1 23 0 690 243 124 14 chr4 180270715 180270925 -4017737 + MIR SINE MIR 28 260 -2 314 388 75 4 chr4 180271504 180271759 -4016903 - L2 LINE L2 -173 3099 2827 1090 53 8 0 chr4 180271840 180271973 -4016689 + AluSq/x SINE Alu 1 134 -178 1269 133 0 23 chr4 180271975 180272193 -4016469 + AluJo SINE Alu 85 297 -15 535 304 184 35 chr4 180272236 180272554 -4016108 - L2 LINE L2 -649 2665 2396 1637 153 10 42 chr4 180272554 180272867 -4015795 + AluJo SINE Alu 1 303 -9 535 304 184 35 chr4 180272867 180273287 -4015375 - L2 LINE L2 -918 2396 1817 1765 116 0 4 chr4 180273321 180273571 -4015091 + AluSx SINE Alu 6 254 -58 709 247 0 20 chr4 180273704 180273854 -4014808 + MIR3 SINE MIR 14 160 -48 1016 174 0 0 chr4 180274696 180274857 -4013805 - FRAM SINE Alu -5 161 1 366 238 113 40 chr4 180275661 180275812 -4012850 + MIR3 SINE MIR 24 185 -23 2293 87 0 0 chr4 180276507 180276807 -4011855 + AluSq SINE Alu 1 300 -13 5109 132 63 9 chr4 180276812 180277651 -4011011 - MER4D LTR ERV1 -19 884 1 1317 174 57 75 chr4 180277788 180277957 -4010705 + L1MB2 LINE L1 5844 6015 -156 5061 138 21 54 chr4 180277957 180278431 -4010231 - MER4D LTR ERV1 0 903 472 2035 138 0 0 chr4 180278431 180278735 -4009927 + AluSx SINE Alu 1 304 -8 5061 138 21 54 chr4 180278735 180279193 -4009469 - MER4D LTR ERV1 -431 472 1 1317 174 57 75 chr4 180279193 180279303 -4009359 + L1MB2 LINE L1 6015 6119 -52 1700 127 64 3 chr4 180279303 180279586 -4009076 - AluSx SINE Alu -6 306 7 1317 174 57 75 chr4 180279586 180279639 -4009023 + L1MB2 LINE L1 6119 6171 0 2176 95 0 10 chr4 180279873 180280168 -4008494 + AluSg SINE Alu 4 295 -15 194 274 14 27 chr4 180280237 180280310 -4008352 - L2 LINE L2 -210 3062 2991 518 27 267 0 chr4 180280329 180280404 -4008258 - HY3 scRNA scRNA -3 98 4 451 255 80 28 chr4 180280742 180280993 -4007669 - L1ME4a LINE L1 -206 5915 5652 324 0 0 0 chr4 180281060 180281096 -4007566 + (TG)n Simple_repeat Simple_repeat 2 37 0 1765 145 14 3 chr4 180281406 180281689 -4006973 + AluSx SINE Alu 1 286 -26 350 188 0 0 chr4 180282222 180282286 -4006376 - FLAM_A SINE Alu -2 131 68 544 130 0 22 chr4 180282290 180282382 -4006280 - MER65A LTR ERV1 -355 90 1 739 135 0 0 chr4 180282429 180282533 -4006129 + MLT1B LTR MaLR 6 109 -281 864 138 0 8 chr4 180282533 180282663 -4005999 + FLAM_C SINE Alu 1 129 -14 1582 157 20 24 chr4 180282670 180282964 -4005698 + MLT1B LTR MaLR 98 390 0 1776 259 55 78 chr4 180282975 180283411 -4005251 - MSTA LTR MaLR -2 426 1 441 302 66 23 chr4 180283493 180283798 -4004864 + L1ME4a LINE L1 5623 5940 -224 705 252 171 14 chr4 180283870 180284092 -4004570 + MIR SINE MIR 5 261 -1 845 241 111 31 chr4 180284110 180284400 -4004262 + MSTD LTR MaLR 21 345 -51 2531 45 0 0 chr4 180284418 180284729 -4003933 + AluY SINE Alu 1 311 0 1605 223 142 15 chr4 180284880 180285389 -4003273 + MLT1F1 LTR MaLR 1 567 0 23 33 0 0 chr4 180285764 180285794 -4002868 + AT_rich Low_complexity Low_complexity 1 30 0 286 228 73 8 chr4 180285798 180285921 -4002741 + L1ME4a LINE L1 5988 6118 -3 216 0 0 0 chr4 180286103 180286127 -4002535 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 488 205 41 25 chr4 180286946 180287068 -4001594 - MER117 DNA MER1_type -1 196 73 198 191 0 0 chr4 180287105 180287152 -4001510 + (TA)n Simple_repeat Simple_repeat 1 47 0 2206 119 0 0 chr4 180287445 180287755 -4000907 - AluSx SINE Alu -2 310 1 1862 127 3 80 chr4 180288591 180288929 -3999733 - AluSx SINE Alu 0 312 1 1874 218 45 20 chr4 180289095 180289541 -3999121 + MER65C LTR ERV1 1 457 -4 2010 114 3 41 chr4 180290038 180290355 -3998307 + AluSx SINE Alu 1 305 -7 1819 142 17 13 chr4 180290572 180290874 -3997788 + MSTA LTR MaLR 1 303 -125 464 275 50 86 chr4 180290874 180291192 -3997470 - L1ME4a LINE L1 -177 5944 5642 2070 102 0 3 chr4 180291192 180291502 -3997160 + AluSc SINE Alu 1 309 0 464 275 50 86 chr4 180291502 180291623 -3997039 - L1ME4a LINE L1 -479 5642 5518 386 201 0 0 chr4 180291649 180291719 -3996943 + MIR SINE MIR 86 156 -52 304 203 27 0 chr4 180292089 180292163 -3996499 + MIR SINE MIR 89 164 -98 291 255 85 78 chr4 180292322 180292475 -3996187 - MIR SINE MIR -52 210 57 309 26 0 0 chr4 180293163 180293201 -3995461 + (TG)n Simple_repeat Simple_repeat 2 39 0 263 216 284 29 chr4 180293543 180293645 -3995017 + MIR SINE MIR 64 191 -71 822 236 0 0 chr4 180294032 180294197 -3994465 - FRAM SINE Alu -1 165 1 1759 141 3 20 chr4 180294397 180294627 -3994035 - LTR51 LTR ERV1 0 671 446 3869 94 0 4 chr4 180294627 180295140 -3993522 + MER9 LTR ERVK 1 511 0 1759 141 3 20 chr4 180295140 180295206 -3993456 - LTR51 LTR ERV1 -225 446 380 2326 90 0 0 chr4 180295208 180295520 -3993142 + AluSx SINE Alu 1 312 0 316 150 11 0 chr4 180295710 180295771 -3992891 - L1PA16 LINE L1 -310 5856 5790 258 32 0 0 chr4 180296501 180296532 -3992130 + (TTTTA)n Simple_repeat Simple_repeat 4 34 0 1935 97 3 7 chr4 180296537 180296827 -3991835 - AluSq SINE Alu -20 293 5 797 233 83 12 chr4 180297599 180297852 -3990810 - L1ME LINE L1 -526 5636 5366 219 139 0 0 chr4 180297854 180297890 -3990772 + (TC)n Simple_repeat Simple_repeat 1 36 0 2456 61 0 0 chr4 180297890 180298201 -3990461 - AluY SINE Alu 0 311 1 1965 115 10 3 chr4 180298203 180298499 -3990163 - AluSx SINE Alu -14 298 1 2170 89 3 16 chr4 180298510 180298823 -3989839 - AluSq SINE Alu -4 309 1 441 214 21 50 chr4 180298848 180298988 -3989674 - L1M LINE L1 -736 5428 5293 1243 141 30 0 chr4 180299004 180299203 -3989459 - MER4B LTR ERV1 0 610 406 2392 76 0 13 chr4 180349433 180349737 -3938925 + AluSq SINE Alu 1 300 -13 1331 172 11 30 chr4 180349747 180350015 -3938647 + AluJo SINE Alu 42 304 -8 280 291 209 13 chr4 180350027 180350185 -3938477 + MIR SINE MIR 64 252 -10 1972 149 3 13 chr4 180350484 180350793 -3937869 + AluSx SINE Alu 1 306 -6 463 261 100 8 chr4 180350865 180350995 -3937667 + MIR SINE MIR 10 151 -111 612 238 87 57 chr4 180353068 180353113 -3935549 + L1M4 LINE L1 3497 3539 -2607 2186 123 0 0 chr4 180353113 180353414 -3935248 - AluSx SINE Alu -11 301 1 612 238 87 57 chr4 180353414 180353633 -3935029 + L1M4 LINE L1 3539 3769 -2377 757 172 6 12 chr4 180353748 180353911 -3934751 - L1MA10 LINE L1 -1 6333 6172 514 262 80 15 chr4 180354093 180354272 -3934390 - MIR SINE MIR -64 198 13 6467 58 54 3 chr4 180354853 180355779 -3932883 + L1PA8 LINE L1 5201 6170 -2 210 267 267 13 chr4 180356542 180356617 -3932045 + L2 LINE L2 3192 3285 -28 1600 117 100 4 chr4 180356617 180356898 -3931764 + MER4C LTR ERV1 1 308 -157 220 27 54 0 chr4 180356898 180356935 -3931727 + (TTTTA)n Simple_repeat Simple_repeat 1 39 0 2296 98 7 3 chr4 180357014 180357319 -3931343 - AluSp SINE Alu -7 306 1 1224 71 0 6 chr4 180357350 180357519 -3931143 + MER4C LTR ERV1 298 465 0 5037 86 3 0 chr4 180357696 180358391 -3930271 + L1PA8A LINE L1 5392 6088 -43 2223 113 0 0 chr4 180359083 180359383 -3929279 - AluSx SINE Alu -12 300 1 1757 176 42 15 chr4 180359530 180359865 -3928797 - MER2 DNA MER2_type 0 344 1 2053 108 7 7 chr4 180359971 180360250 -3928412 + AluSg SINE Alu 1 279 -31 243 300 22 0 chr4 180360431 180360521 -3928141 + MARNA DNA Mariner 238 329 -257 3363 65 52 2 chr4 180362146 180362609 -3926053 - LTR19A LTR ERV1 0 486 1 3454 64 18 0 chr4 180362609 180363062 -3925600 - LTR19A-int LTR ERV1 0 5586 5126 * 15437 50 7 2 chr4 180363057 180363074 -3925588 - LTR19A-int LTR ERV1 -1205 4381 4366 2397 95 0 3 chr4 180363074 180363379 -3925283 + AluSg SINE Alu 2 305 -5 15437 50 7 2 chr4 180363379 180365441 -3923221 - LTR19A-int LTR ERV1 -1220 4366 2345 562 183 122 0 chr4 180365454 180365569 -3923093 + LTR8 LTR ERV1 129 257 -434 16750 78 22 13 chr4 180365569 180367500 -3921162 - LTR19A-int LTR ERV1 -3329 2257 303 203 0 37 0 chr4 180367500 180367527 -3921135 + (GA)n Simple_repeat Simple_repeat 2 29 0 16750 78 22 13 chr4 180367527 180367833 -3920829 - LTR19A-int LTR ERV1 -5283 303 1 3785 75 17 4 chr4 180367833 180368313 -3920349 - LTR19A LTR ERV1 0 486 1 2325 103 0 0 chr4 180369317 180369618 -3919044 + AluSx SINE Alu 1 301 -11 1502 170 66 24 chr4 180371585 180371874 -3916788 + AluJb SINE Alu 1 301 -11 2038 108 7 4 chr4 180371876 180372155 -3916507 + AluSx SINE Alu 1 280 -32 26 0 0 0 chr4 180372822 180372848 -3915814 + AT_rich Low_complexity Low_complexity 1 26 0 2036 118 10 7 chr4 180372857 180373138 -3915524 + AluSq SINE Alu 1 285 -28 378 0 0 0 chr4 180373138 180373180 -3915482 + (CA)n Simple_repeat Simple_repeat 1 42 0 2036 118 10 7 chr4 180373180 180373194 -3915468 + AluSq SINE Alu 285 297 -16 195 279 77 19 chr4 180373604 180373708 -3914954 - L2 LINE L2 -45 3268 3159 3305 174 62 18 chr4 180373934 180373998 -3914664 - L1MB3 LINE L1 0 6183 6123 6907 81 4 4 chr4 180373998 180374984 -3913678 - L1PB1 LINE L1 -1 6150 5154 3305 174 62 18 chr4 180374984 180375602 -3913060 - L1MB3 LINE L1 -60 6123 5471 * 4337 222 32 52 chr4 180375058 180376099 -3912563 - L1MD3 LINE L1 -743 5403 5032 2108 107 3 42 chr4 180376099 180376407 -3912255 - AluSx SINE Alu -15 297 2 4337 222 32 52 chr4 180376407 180377168 -3911494 - L1MD3 LINE L1 -1114 5032 4257 253 311 76 8 chr4 180378733 180378865 -3909797 + MIR SINE MIR 37 177 -85 997 162 126 5 chr4 180379251 180379619 -3909043 - MLT1E2 LTR MaLR 0 626 116 234 228 18 0 chr4 180379617 180379674 -3908988 - MLT1E2 LTR MaLR -507 147 90 * 709 262 24 83 chr4 180380589 180380680 -3907982 + MIR SINE MIR 2 97 -165 231 36 0 0 chr4 180380680 180380708 -3907954 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 709 262 24 83 chr4 180380708 180380719 -3907943 + MIR SINE MIR 97 107 -155 2310 87 0 0 chr4 180380719 180381007 -3907655 - AluSx SINE Alu -24 288 1 709 262 24 83 chr4 180381007 180381155 -3907507 + MIR SINE MIR 107 238 -24 490 184 29 103 chr4 180381180 180381316 -3907346 - MER112 DNA MER1_type -133 127 2 201 296 92 31 chr4 180381317 180381415 -3907247 - MIR3 SINE MIR -48 160 57 314 215 7 104 chr4 180381598 180381742 -3906920 - LTR38B LTR ERV1 0 610 481 1997 152 0 7 chr4 180381753 180382055 -3906607 + AluSx SINE Alu 1 300 -12 236 261 15 15 chr4 180382223 180382288 -3906374 - LTR38 LTR ERV1 -362 194 130 370 273 0 50 chr4 180382396 180382517 -3906145 - LTR38B LTR ERV1 -495 115 1 226 304 76 0 chr4 180383165 180383244 -3905418 + MIR SINE MIR 161 245 -17 1939 162 17 0 chr4 180383329 180383626 -3905036 + AluJb SINE Alu 1 302 -10 2025 131 10 3 chr4 180383669 180383974 -3904688 - AluSx SINE Alu -5 307 1 1567 247 77 17 chr4 180384605 180385075 -3903587 - L1ME3A LINE L1 -8 6162 5665 544 210 65 7 chr4 180385106 180385244 -3903418 - L1ME3A LINE L1 -599 5575 5430 2232 82 7 0 chr4 180385255 180385582 -3903080 - AluSp SINE Alu 0 329 1 632 275 38 8 chr4 180385649 180385889 -3902773 - L1ME3A LINE L1 -877 5269 5023 336 156 31 0 chr4 180386136 180386200 -3902462 - L1MA5 LINE L1 -6 6294 6229 2119 125 0 13 chr4 180386203 180386508 -3902154 - AluSx SINE Alu -11 301 1 4604 133 67 29 chr4 180386508 180386889 -3901773 - L1MA6 LINE L1 -120 6180 5815 1357 91 152 0 chr4 180386889 180387087 -3901575 + MER30 DNA MER1_type 3 230 0 4604 133 67 29 chr4 180387087 180387577 -3901085 - L1MA6 LINE L1 -485 5815 5276 1988 125 0 4 chr4 180388390 180388694 -3899968 + AluSg SINE Alu 1 303 0 540 263 39 13 chr4 180388728 180388884 -3899778 - Tigger8 DNA MER2_type -468 198 39 2288 92 7 0 chr4 180391571 180391865 -3896797 + AluSc SINE Alu 1 296 -13 848 220 28 0 chr4 180392202 180392379 -3896283 + MER20 DNA MER1_type 37 218 -1 247 265 0 0 chr4 180392947 180392996 -3895666 + L2 LINE L2 3204 3252 -20 341 333 75 0 chr4 180393319 180393466 -3895196 + L1ME LINE L1 5663 5820 -301 232 242 120 34 chr4 180394824 180394964 -3893698 - MIR SINE MIR -62 146 13 275 270 86 63 chr4 180396323 180396497 -3892165 - MIR3 SINE MIR -5 203 26 1588 176 53 14 chr4 180396877 180397161 -3891501 + AluJb SINE Alu 1 295 -17 1250 108 0 18 chr4 180397318 180397485 -3891177 + AluSx SINE Alu 1 164 -148 1923 72 111 4 chr4 180398473 180398735 -3889927 + AluSg SINE Alu 1 290 -20 207 0 0 0 chr4 180398737 180398760 -3889902 + (TA)n Simple_repeat Simple_repeat 1 23 0 2181 111 0 0 chr4 180399262 180399550 -3889112 + AluSx SINE Alu 1 288 -24 25 0 0 0 chr4 180399550 180399575 -3889087 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr4 180400176 180400205 -3888457 + AT_rich Low_complexity Low_complexity 1 29 0 2320 100 0 0 chr4 180400644 180400945 -3887717 - AluSq SINE Alu -8 305 5 23 54 0 0 chr4 180401547 180401584 -3887078 + AT_rich Low_complexity Low_complexity 1 37 0 321 26 0 0 chr4 180402810 180402848 -3885814 + (TG)n Simple_repeat Simple_repeat 2 39 0 2252 93 7 3 chr4 180403160 180403460 -3885202 - AluSq SINE Alu -12 301 1 243 0 0 0 chr4 180403497 180403524 -3885138 + (TAA)n Simple_repeat Simple_repeat 2 28 0 29 60 0 0 chr4 180404479 180404529 -3884133 + AT_rich Low_complexity Low_complexity 1 50 0 180 111 0 0 chr4 180405103 180405130 -3883532 + (T)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr4 180405412 180405434 -3883228 + AT_rich Low_complexity Low_complexity 1 22 0 307 333 10 10 chr4 180405513 180405615 -3883047 - L3 LINE CR1 -45 1532 1431 2209 66 21 0 chr4 180405704 180405992 -3882670 + AluY SINE Alu 1 294 -17 425 292 72 34 chr4 180406311 180406520 -3882142 - L3 LINE CR1 -323 1254 1038 1886 161 7 0 chr4 180406590 180406889 -3881773 - AluSx SINE Alu -9 303 3 1888 98 41 82 chr4 180407025 180407341 -3881321 - AluSx SINE Alu -9 303 1 636 267 55 0 chr4 180407512 180407677 -3880985 - MER5B DNA MER1_type -4 174 1 2541 52 3 10 chr4 180409055 180409360 -3879302 + AluY SINE Alu 1 303 -8 354 155 14 14 chr4 180410173 180410244 -3878418 - Charlie5 DNA MER1_type -2506 106 36 616 232 81 15 chr4 180410342 180410647 -3878015 + MSTD LTR MaLR 1 396 0 608 120 65 0 chr4 180412909 180413001 -3875661 - AluY SINE Alu -11 300 203 448 89 0 0 chr4 180413001 180413057 -3875605 - AluSp SINE Alu -132 171 116 1497 112 18 5 chr4 180413057 180413280 -3875382 + AluSg/x SINE Alu 85 310 0 610 136 107 95 chr4 180413387 180413411 -3875251 + MER63 DNA MER1_type 891 913 -149 2798 19 0 0 chr4 180413411 180413722 -3874940 - AluYa5 SINE Alu 0 311 1 610 136 107 95 chr4 180413722 180413866 -3874796 + MER63 DNA MER1_type 913 1061 -1 561 227 46 77 chr4 180413995 180414189 -3874473 + MIR SINE MIR 15 202 -60 225 0 0 0 chr4 180414189 180414214 -3874448 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 221 235 31 10 chr4 180414767 180414865 -3873797 + (TA)n Simple_repeat Simple_repeat 2 101 0 454 266 160 99 chr4 180415287 180415613 -3873049 + L1ME4a LINE L1 5396 5701 -420 1763 135 49 31 chr4 180415613 180415901 -3872761 - AluJb SINE Alu -14 298 6 454 266 160 99 chr4 180415901 180416242 -3872420 + L1ME4a LINE L1 5701 6104 -17 2743 187 109 7 chr4 180416267 180416872 -3871790 + LTR65 LTR ERV1 1 667 -2 605 326 19 12 chr4 180416991 180417249 -3871413 - MIR SINE MIR 0 262 3 2209 128 0 0 chr4 180417422 180417728 -3870934 + AluSx SINE Alu 1 306 -6 1911 102 0 26 chr4 180417892 180418157 -3870505 - AluSq SINE Alu -55 258 1 201 293 13 40 chr4 180418743 180418818 -3869844 - L2 LINE L2 -8 3264 3192 418 330 100 13 chr4 180419320 180419550 -3869112 + MIR SINE MIR 13 262 0 222 400 91 0 chr4 180419746 180419856 -3868806 - L2 LINE L2 -16 3256 3137 407 294 44 112 chr4 180421274 180421462 -3867200 - MLT1J LTR MaLR -2 509 310 2003 141 0 16 chr4 180421462 180421767 -3866895 - AluJo SINE Alu -12 300 1 407 294 44 112 chr4 180421767 180421783 -3866879 - MLT1J LTR MaLR -201 310 294 1698 164 21 14 chr4 180421783 180422100 -3866562 - AluJo SINE Alu 0 319 1 407 294 44 112 chr4 180422100 180422437 -3866225 - MLT1J LTR MaLR -217 294 2 290 289 41 0 chr4 180422979 180423076 -3865586 - MER5B DNA MER1_type -3 175 75 752 232 124 5 chr4 180423167 180423352 -3865310 + MER3 DNA MER1_type 1 207 -2 405 297 173 42 chr4 180424847 180425339 -3863323 - L2 LINE L2 -5 3308 2712 1971 153 14 101 chr4 180425536 180425960 -3862702 - MLT1B LTR MaLR -3 387 1 812 213 92 35 chr4 180426448 180426873 -3861789 - LTR56 LTR ERV1 -5 440 9 1718 129 43 18 chr4 180426888 180427168 -3861494 - L1MB3 LINE L1 -5 6178 5892 1906 212 45 23 chr4 180427173 180427616 -3861046 - MLT1C LTR MaLR -9 458 6 2363 174 106 13 chr4 180427952 180428002 -3860660 + L1MB7 LINE L1 5115 5159 -1024 1486 173 29 59 chr4 180428002 180428078 -3860584 + AluJo SINE Alu 1 78 -234 2136 101 0 17 chr4 180428078 180428394 -3860268 - AluSq SINE Alu 0 311 1 1486 173 29 59 chr4 180428394 180428622 -3860040 + AluJo SINE Alu 78 298 -14 2363 174 106 13 chr4 180428622 180429261 -3859401 + L1MB7 LINE L1 5159 5971 -212 350 292 58 32 chr4 180429981 180430135 -3858527 + MIR3 SINE MIR 19 176 -32 21 36 0 0 chr4 180430474 180430502 -3858160 + AT_rich Low_complexity Low_complexity 1 28 0 1989 146 10 0 chr4 180431143 180431437 -3857225 - AluJb SINE Alu -15 297 1 1144 188 74 106 chr4 180431591 180431968 -3856694 - MLT1A1 LTR MaLR 0 365 1 947 326 118 33 chr4 180432612 180432840 -3855822 + L2 LINE L2 1914 2121 -1151 953 207 83 0 chr4 180432840 180433033 -3855629 - MER3 DNA MER1_type 0 209 1 947 326 118 33 chr4 180433033 180433240 -3855422 + L2 LINE L2 2121 2309 -963 1632 228 52 25 chr4 180433240 180433604 -3855058 - MLT1A2 LTR MaLR 0 374 1 947 326 118 33 chr4 180433604 180433779 -3854883 + L2 LINE L2 2309 2468 -804 2342 114 0 0 chr4 180433779 180434085 -3854577 - AluSx SINE Alu -6 306 1 947 326 118 33 chr4 180434085 180434530 -3854132 + L2 LINE L2 2468 3051 -221 832 216 21 26 chr4 180435077 180435267 -3853395 - MER5A DNA MER1_type 0 189 1 2054 106 7 33 chr4 180435858 180436161 -3852501 - AluSx SINE Alu -17 295 1 938 131 7 0 chr4 180436376 180436513 -3852149 + MLT1A1 LTR MaLR 1 138 -227 2449 131 119 71 chr4 180436513 180436534 -3852128 + MER21A LTR ERV1 1 20 -911 405 0 0 0 chr4 180436534 180436579 -3852083 + (CA)n Simple_repeat Simple_repeat 2 46 0 2449 131 119 71 chr4 180436579 180437076 -3851586 + MER21A LTR ERV1 20 544 -387 1023 146 0 0 chr4 180437084 180437242 -3851420 - AluSg/x SINE Alu -1 309 152 2087 166 35 69 chr4 180437244 180437280 -3851382 + MER21A LTR ERV1 516 552 -379 2252 123 0 0 chr4 180437280 180437590 -3851072 - AluSx SINE Alu -2 310 1 2087 166 35 69 chr4 180437590 180437602 -3851060 + MER21A LTR ERV1 552 563 -368 1490 131 22 118 chr4 180437602 180437916 -3850746 - AluYb8 SINE Alu -11 307 24 2087 166 35 69 chr4 180437916 180438289 -3850373 + MER21A LTR ERV1 563 924 -7 520 187 21 2 chr4 180438293 180438468 -3850194 + MLT1A1 LTR MaLR 133 345 -20 367 273 55 67 chr4 180438703 180438868 -3849794 - MIR3 SINE MIR -32 176 14 2564 69 0 0 chr4 180439082 180439386 -3849276 + AluY SINE Alu 2 305 -6 545 218 0 0 chr4 180439844 180439945 -3848717 - FRAM SINE Alu -6 170 70 1478 151 0 48 chr4 180439950 180440068 -3848594 - AluJo SINE Alu -73 239 138 2126 113 7 0 chr4 180440068 180440361 -3848301 - AluSp SINE Alu -18 295 1 1478 151 0 48 chr4 180440361 180440493 -3848169 - AluJo SINE Alu -174 138 1 1305 133 10 5 chr4 180440796 180440999 -3847663 + MER20 DNA MER1_type 16 219 0 182 167 56 0 chr4 180441435 180441471 -3847191 - L3b LINE CR1 -241 1342 1305 544 139 0 0 chr4 180441530 180441609 -3847053 - MADE1 DNA Mariner -1 79 1 354 328 57 53 chr4 180443197 180443459 -3845203 + L2 LINE L2 1316 1578 -1736 1377 207 22 15 chr4 180443492 180443763 -3844899 - AluJo SINE Alu -39 273 1 22 0 0 0 chr4 180443931 180443953 -3844709 + AT_rich Low_complexity Low_complexity 1 22 0 284 275 43 0 chr4 180444027 180444096 -3844566 - MIR SINE MIR -162 100 29 292 276 86 0 chr4 180444098 180444214 -3844448 - L2 LINE L2 -1376 1938 1813 442 246 18 9 chr4 180444305 180444415 -3844247 - L2 LINE L2 0 3313 3203 1785 245 104 28 chr4 180444630 180445176 -3843486 - MLT1G1 LTR MaLR -7 588 1 643 343 103 39 chr4 180445177 180445771 -3842891 + L2 LINE L2 2344 2975 -339 232 266 31 16 chr4 180445954 180446018 -3842644 + L2 LINE L2 3204 3268 -4 180 111 0 0 chr4 180446729 180446756 -3841906 + (TG)n Simple_repeat Simple_repeat 1 27 0 234 331 130 24 chr4 180446897 180447066 -3841596 - MIR SINE MIR -71 191 5 225 0 0 0 chr4 180447656 180447681 -3840981 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 198 0 0 0 chr4 180447860 180447882 -3840780 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 317 326 63 0 chr4 180447882 180447977 -3840685 - L2 LINE L2 -13 3259 3159 2232 105 0 10 chr4 180448217 180448530 -3840132 - AluY SINE Alu -1 310 1 1084 208 104 29 chr4 180448808 180449193 -3839469 + L1M4 LINE L1 2154 2567 -3579 795 228 40 95 chr4 180449193 180449404 -3839258 + L1M4 LINE L1 2818 3039 -3107 2537 168 18 18 chr4 180449404 180449838 -3838824 - Tigger2a DNA MER2_type 0 434 1 795 228 40 95 chr4 180449838 180449913 -3838749 + L1M4 LINE L1 3039 3117 -3029 713 153 23 8 chr4 180449913 180450044 -3838618 + FLAM_C SINE Alu 1 133 0 795 228 40 95 chr4 180450044 180450283 -3838379 + L1M4 LINE L1 3117 3445 -2701 2399 94 0 0 chr4 180450283 180450592 -3838070 + AluSc SINE Alu 1 309 0 795 228 40 95 chr4 180450592 180450652 -3838010 + L1M4 LINE L1 3445 3507 -2639 2387 53 0 0 chr4 180450652 180450957 -3837705 + AluY SINE Alu 1 305 0 1051 146 118 112 chr4 180451790 180452112 -3836550 - MER33 DNA MER1_type 0 324 1 2345 88 0 0 chr4 180452342 180452638 -3836024 - AluSq SINE Alu -17 296 1 180 0 0 0 chr4 180453175 180453195 -3835467 + (A)n Simple_repeat Simple_repeat 1 20 0 254 274 123 0 chr4 180453739 180453812 -3834850 - L2 LINE L2 -3 3269 3188 238 237 108 54 chr4 180455156 180455249 -3833413 + MER104 DNA Tc2 67 164 -16 270 203 58 29 chr4 180456565 180456634 -3832028 + L2 LINE L2 3242 3312 -1 2135 127 0 0 chr4 180456865 180457156 -3831506 - AluSq SINE Alu -22 291 1 1506 80 56 14 chr4 180458079 180458292 -3830370 + AluY SINE Alu 1 222 -89 2152 106 16 13 chr4 180458652 180458955 -3829707 - AluY SINE Alu -7 304 1 2068 122 10 0 chr4 180458955 180459243 -3829419 - AluSx SINE Alu -21 291 1 180 239 37 110 chr4 180459317 180459357 -3829305 - L3 LINE CR1 -196 1381 1340 1550 154 57 30 chr4 180459357 180459656 -3829006 - AluJo SINE Alu -5 307 1 180 239 37 110 chr4 180459656 180459724 -3828938 - L3 LINE CR1 -237 1340 1281 265 228 119 50 chr4 180459742 180459843 -3828819 - MIR3 SINE MIR -43 165 58 236 224 86 0 chr4 180459889 180459947 -3828715 - L3 LINE CR1 -307 1270 1208 21 36 0 0 chr4 180460321 180460349 -3828313 + AT_rich Low_complexity Low_complexity 1 28 0 2285 94 0 0 chr4 180460946 180461234 -3827428 - AluSx SINE Alu -24 288 1 2217 108 0 40 chr4 180461387 180461712 -3826950 - AluSx SINE Alu 0 312 1 22 56 0 0 chr4 180461772 180461808 -3826854 + AT_rich Low_complexity Low_complexity 1 36 0 667 264 153 67 chr4 180462973 180463491 -3825171 + L2 LINE L2 2777 3312 -1 882 173 0 0 chr4 180463714 180463847 -3824815 - FLAM_A SINE Alu 0 133 1 732 222 89 58 chr4 180463977 180464414 -3824248 + MLT1D LTR MaLR 1 481 -24 504 230 70 76 chr4 180464421 180464728 -3823934 + L1M4 LINE L1 2740 3047 -3099 2126 114 7 0 chr4 180464728 180465018 -3823644 + AluSx SINE Alu 3 294 -18 2358 94 0 3 chr4 180465023 180465331 -3823331 + AluSg SINE Alu 1 307 -3 504 230 70 76 chr4 180465331 180465556 -3823106 + L1M4 LINE L1 3051 3275 -2871 709 329 36 6 chr4 180465581 180465943 -3822719 + L1M4 LINE L1 3449 3821 -2325 261 260 150 0 chr4 180465971 180466071 -3822591 + L1MC4 LINE L1 7839 7953 -89 1240 129 6 0 chr4 180467382 180467553 -3821109 + AluSq SINE Alu 1 172 -141 1640 101 0 0 chr4 180467553 180467761 -3820901 + AluSg/x SINE Alu 90 297 -15 24 0 0 0 chr4 180468493 180468517 -3820145 + AT_rich Low_complexity Low_complexity 1 24 0 761 89 9 18 chr4 180470333 180470445 -3818217 - HY1 scRNA scRNA -1 111 1 21 36 0 0 chr4 180470507 180470535 -3818127 + AT_rich Low_complexity Low_complexity 1 28 0 345 250 71 21 chr4 180470536 180470676 -3817986 + L1MC5 LINE L1 7766 7912 -49 354 242 262 16 chr4 180470694 180470938 -3817724 + L1MC4a LINE L1 6279 6582 -1226 2036 215 172 6 chr4 180471005 180471651 -3817011 + L1MC4 LINE L1 6822 7574 -468 212 326 0 0 chr4 180472046 180472095 -3816567 + L2 LINE L2 3203 3251 -21 1897 123 14 3 chr4 180472120 180472404 -3816258 + AluSq SINE Alu 1 287 -26 301 336 75 0 chr4 180472633 180472740 -3815922 + MIR3 SINE MIR 85 199 -9 763 194 50 0 chr4 180473271 180473431 -3815231 - L1MB7 LINE L1 -21 6163 5996 2553 37 3 0 chr4 180473474 180473769 -3814893 - AluY SINE Alu -15 296 1 201 276 143 19 chr4 180473821 180473926 -3814736 + MIR SINE MIR 33 150 -112 2238 152 51 11 chr4 180473938 180474392 -3814270 - L1MB7 LINE L1 -199 5985 5514 240 160 130 90 chr4 180474449 180474549 -3814113 - L1MC4a LINE L1 -1455 6353 6250 23 0 0 0 chr4 180474834 180474857 -3813805 + AT_rich Low_complexity Low_complexity 1 23 0 383 238 99 20 chr4 180475420 180475521 -3813141 - MER5B DNA MER1_type -1 177 69 2366 139 51 12 chr4 180475661 180476071 -3812591 + MSTB LTR MaLR 1 426 0 237 360 128 9 chr4 180476140 180476351 -3812311 + L2 LINE L2 2182 2417 -897 572 263 51 11 chr4 180476482 180476657 -3812005 + MER91B DNA MER1_type 1 182 -8 239 308 133 17 chr4 180476662 180476782 -3811880 + MIR SINE MIR 33 166 -96 649 119 72 155 chr4 180477085 180477206 -3811456 - MER5B DNA MER1_type 0 178 77 2106 123 3 0 chr4 180477206 180477498 -3811164 - AluSx SINE Alu -19 293 1 649 119 72 155 chr4 180477498 180477570 -3811092 - MER5B DNA MER1_type -101 77 1 243 259 106 47 chr4 180477710 180477880 -3810782 + L1ME LINE L1 5524 5703 -418 327 179 0 0 chr4 180478101 180478168 -3810494 + (CATA)n Simple_repeat Simple_repeat 4 70 0 202 211 0 0 chr4 180478169 180478207 -3810455 + GA-rich Low_complexity Low_complexity 1 38 0 253 196 80 123 chr4 180478315 180478358 -3810304 - MIR SINE MIR 0 262 219 1885 149 3 19 chr4 180478358 180478673 -3809989 + AluJb SINE Alu 1 310 -2 253 196 80 123 chr4 180478673 180478767 -3809895 - MIR SINE MIR -43 219 131 351 238 108 45 chr4 180478836 180479059 -3809603 + L1ME4a LINE L1 5611 5847 -274 269 290 124 41 chr4 180479087 180479232 -3809430 + MIR SINE MIR 55 211 -51 188 296 0 37 chr4 180479264 180479318 -3809344 - L2 LINE L2 -270 3043 2992 829 291 99 15 chr4 180479364 180479766 -3808896 - L2 LINE L2 -676 2638 2203 226 318 85 8 chr4 180480917 180481046 -3807616 + L2 LINE L2 3175 3313 0 604 113 0 0 chr4 180481090 180481187 -3807475 + AluS SINE Alu 1 97 -215 185 228 0 105 chr4 180481356 180481413 -3807249 + L2 LINE L2 3172 3222 -50 2075 90 53 13 chr4 180481520 180481820 -3806842 + AluSx SINE Alu 1 312 0 21 36 0 0 chr4 180482785 180482813 -3805849 + AT_rich Low_complexity Low_complexity 1 28 0 1382 176 40 37 chr4 180482903 180483199 -3805463 - AluJo SINE Alu -14 298 2 428 147 0 0 chr4 180483542 180483617 -3805045 + L1MC4a LINE L1 5839 5913 -1895 1839 145 24 14 chr4 180483849 180484146 -3804516 + AluJo SINE Alu 1 300 -12 2436 90 0 0 chr4 180484158 180484459 -3804203 + AluSg SINE Alu 1 301 -9 793 219 11 0 chr4 180484629 180484807 -3803855 - L1ME LINE L1 -358 5804 5625 217 304 14 14 chr4 180484910 180484979 -3803683 + MIR3 SINE MIR 124 192 -16 1987 147 3 3 chr4 180485810 180486103 -3802559 + AluJo SINE Alu 1 293 -19 713 125 0 0 chr4 180486120 180486224 -3802438 - AluSg/x SINE Alu -12 298 195 1471 109 0 14 chr4 180486442 180486653 -3802009 + AluSg/x SINE Alu 100 307 -3 2485 59 13 0 chr4 180486849 180487153 -3801509 + AluSx SINE Alu 1 308 -4 1699 163 10 26 chr4 180487170 180487476 -3801186 + AluJo SINE Alu 5 305 -7 2154 93 3 10 chr4 180487975 180488266 -3800396 - AluSx SINE Alu -19 293 5 25 0 0 0 chr4 180489083 180489108 -3799554 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr4 180489452 180489473 -3799189 + AT_rich Low_complexity Low_complexity 1 21 0 2180 92 0 0 chr4 180489659 180489975 -3798687 + AluSg SINE Alu 1 316 0 2934 258 56 20 chr4 180491109 180492244 -3796418 - L1MEc LINE L1 -4813 1583 408 367 297 22 54 chr4 180492300 180492485 -3796177 + MER5A DNA MER1_type 11 189 0 375 143 25 25 chr4 180492962 180493081 -3795581 + (TA)n Simple_repeat Simple_repeat 1 119 0 23 33 0 0 chr4 180493086 180493116 -3795546 + AT_rich Low_complexity Low_complexity 1 30 0 307 174 47 23 chr4 180493145 180493231 -3795431 + L1MC4 LINE L1 6614 6701 -1341 27 49 0 0 chr4 180493248 180493289 -3795373 + AT_rich Low_complexity Low_complexity 1 41 0 322 275 83 0 chr4 180493318 180493427 -3795235 - MIR SINE MIR -58 204 87 1062 147 6 6 chr4 180494186 180494349 -3794313 - AluSg/x SINE Alu -18 292 130 308 290 76 49 chr4 180494535 180494759 -3793903 - L1M4 LINE L1 -786 5360 5131 61 52 0 0 chr4 180494842 180494938 -3793724 + AT_rich Low_complexity Low_complexity 1 96 0 566 200 19 24 chr4 180495016 180495181 -3793481 + L1ME1 LINE L1 6013 6184 0 440 310 222 27 chr4 180495281 180495939 -3792723 - L1M4 LINE L1 -1316 4830 4045 245 283 62 55 chr4 180496086 180496521 -3792141 - L1M4 LINE L1 -2329 3817 3380 222 37 0 0 chr4 180496546 180496573 -3792089 + (TA)n Simple_repeat Simple_repeat 2 28 0 2329 93 0 16 chr4 180496573 180496878 -3791784 - AluSx SINE Alu -12 300 1 958 0 0 0 chr4 180497229 180497333 -3791329 - AluYb8 SINE Alu -214 104 1 2437 80 3 0 chr4 180498921 180499220 -3789442 - AluSp SINE Alu -12 301 2 2550 55 3 0 chr4 180500253 180500560 -3788102 - AluY SINE Alu -3 308 1 2286 91 0 41 chr4 180501197 180501515 -3787147 - AluSq SINE Alu -8 305 1 1943 165 7 7 chr4 180502422 180502719 -3785943 + AluJb SINE Alu 1 297 -15 2242 99 10 0 chr4 180503648 180503941 -3784721 + AluSg SINE Alu 1 296 -14 2111 131 39 31 chr4 180504107 180504467 -3784195 + THE1B LTR MaLR 1 363 -1 249 150 0 0 chr4 180504870 180504910 -3783752 + FLAM_A SINE Alu 1 40 -93 2100 137 20 0 chr4 180505794 180506093 -3782569 + AluSx SINE Alu 1 305 -7 26 64 0 0 chr4 180506209 180506256 -3782406 + AT_rich Low_complexity Low_complexity 1 47 0 450 207 58 0 chr4 180506409 180506496 -3782166 - L2 LINE L2 -2 3311 3220 525 176 14 35 chr4 180506520 180506662 -3782000 - HAL1b LINE L1 -527 821 683 1685 218 126 14 chr4 180506786 180506977 -3781685 + L1M4 LINE L1 2276 2444 -3702 2209 99 7 7 chr4 180506977 180507270 -3781392 + AluSq SINE Alu 1 293 -20 1685 218 126 14 chr4 180507270 180507720 -3780942 + L1M4 LINE L1 2444 2989 -3157 2107 218 66 53 chr4 180507721 180508573 -3780089 + L1M4 LINE L1 3072 3934 -2212 264 209 30 15 chr4 180508903 180508970 -3779692 + MER117 DNA MER1_type 1 68 -129 615 100 0 11 chr4 180509178 180509268 -3779394 + FLAM_A SINE Alu 36 124 -18 2118 145 0 0 chr4 180509613 180509910 -3778752 - AluSg SINE Alu -11 299 3 791 162 38 49 chr4 180510020 180510205 -3778457 + MER63B DNA MER1_type 6 188 -248 1769 142 8 8 chr4 180510340 180510607 -3778055 - AluJo SINE Alu -39 273 7 300 323 15 0 chr4 180510992 180511125 -3777537 - MLT1L LTR MaLR -339 276 142 3447 126 65 28 chr4 180512329 180512407 -3776255 + Tigger1 DNA MER2_type 1089 1163 -1255 1840 141 10 3 chr4 180512407 180512704 -3775958 + AluSx SINE Alu 1 299 -13 1815 146 23 23 chr4 180512705 180513007 -3775655 + AluSx SINE Alu 3 304 -8 3447 126 65 28 chr4 180513007 180513559 -3775103 + Tigger1 DNA MER2_type 1162 1744 -674 611 190 0 0 chr4 180513559 180513659 -3775003 + AluJo SINE Alu 30 129 -183 2038 129 7 10 chr4 180513674 180513969 -3774693 + AluSx SINE Alu 1 294 -18 619 184 116 20 chr4 180513969 180514116 -3774546 + AluJo SINE Alu 137 297 -5 3335 189 15 73 chr4 180514117 180514358 -3774304 + Tigger1 DNA MER2_type 1737 1990 -428 2221 113 0 7 chr4 180514358 180514660 -3774002 + AluSx SINE Alu 1 300 -12 3335 189 15 73 chr4 180514660 180515142 -3773520 + Tigger1 DNA MER2_type 1990 2418 0 238 125 100 50 chr4 180515269 180515349 -3773313 + MER34 LTR ERV1 389 472 -70 1790 136 10 20 chr4 180515625 180515927 -3772735 + AluJb SINE Alu 7 305 -7 950 124 12 24 chr4 180516407 180516576 -3772086 + FRAM SINE Alu 1 167 -9 941 142 21 94 chr4 180517624 180517707 -3770955 + L1MB3 LINE L1 5965 6052 -131 1672 168 39 3 chr4 180517707 180517992 -3770670 - AluJb SINE Alu -16 296 2 941 142 21 94 chr4 180517992 180518141 -3770521 + L1MB3 LINE L1 6052 6180 -3 844 113 113 0 chr4 180518413 180518555 -3770107 + MER21A LTR ERV1 1 158 -773 282 250 50 0 chr4 180518566 180518646 -3770016 + MER39 LTR ERV1 315 398 -309 * 2809 140 47 35 chr4 180518634 180519142 -3769520 + MER21A LTR ERV1 390 903 -28 262 21 128 0 chr4 180519734 180519781 -3768881 + CT-rich Low_complexity Low_complexity 4 56 0 2725 41 5 41 chr4 180519786 180520155 -3768507 + SVA Other Other 1 356 -1030 204 194 0 0 chr4 180520826 180520862 -3767800 + GA-rich Low_complexity Low_complexity 2 37 0 2489 84 0 0 chr4 180521724 180522033 -3766629 + AluSc SINE Alu 1 309 0 22 35 0 0 chr4 180522710 180522739 -3765923 + AT_rich Low_complexity Low_complexity 1 29 0 2646 46 0 0 chr4 180522904 180523209 -3765453 - AluY SINE Alu -2 309 5 491 232 105 56 chr4 180523209 180523494 -3765168 + L1MC4 LINE L1 6770 7068 -974 1958 146 3 13 chr4 180523539 180523848 -3764814 + AluSg SINE Alu 1 306 -4 693 113 0 0 chr4 180523963 180524085 -3764577 + AluSg/x SINE Alu 185 306 0 878 238 0 6 chr4 180524164 180524345 -3764317 + MER58A DNA MER1_type 1 180 -44 819 186 12 6 chr4 180524449 180524610 -3764052 - AluJb SINE Alu -4 308 147 542 286 110 9 chr4 180524693 180524920 -3763742 - MIR SINE MIR -12 250 1 1765 163 3 10 chr4 180525750 180526050 -3762612 - AluJb SINE Alu -14 298 1 1147 108 28 0 chr4 180526313 180526489 -3762173 - AluSp SINE Alu -11 302 122 1784 192 159 5 chr4 180526802 180527229 -3761433 + MLT1D LTR MaLR 1 493 -12 2146 113 10 3 chr4 180527427 180527720 -3760942 + AluSx SINE Alu 1 295 -17 2078 122 14 0 chr4 180527800 180528094 -3760568 + AluSx SINE Alu 1 298 -14 2374 153 87 11 chr4 180528116 180528566 -3760096 + L1M3 LINE L1 5327 5810 -370 2103 91 44 7 chr4 180528639 180528935 -3759727 + AluSp SINE Alu 2 308 -5 2347 174 97 25 chr4 180528942 180529459 -3759203 - MLT2B3 LTR ERVL 0 554 1 2276 92 13 7 chr4 180529460 180529766 -3758896 - AluSx SINE Alu -4 308 1 685 282 91 25 chr4 180529874 180530115 -3758547 + MIR SINE MIR 6 262 0 21 36 0 0 chr4 180530130 180530158 -3758504 + AT_rich Low_complexity Low_complexity 1 28 0 730 122 0 0 chr4 180530352 180530459 -3758203 - AluSg SINE Alu -7 305 199 * 761 117 0 0 chr4 180530458 180530561 -3758101 - AluSg SINE Alu -204 106 4 2373 92 13 0 chr4 180530696 180531001 -3757661 + AluSg SINE Alu 1 309 -1 216 0 0 0 chr4 180531245 180531269 -3757393 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chr4 180532083 180532111 -3756551 + GC_rich Low_complexity Low_complexity 1 28 0 270 192 19 0 chr4 180532497 180532549 -3756113 + MER58A DNA MER1_type 162 214 -10 2166 112 3 7 chr4 180532551 180532847 -3755815 + AluSx SINE Alu 1 295 -17 933 161 0 19 chr4 180532881 180533036 -3755626 - FRAM SINE Alu -14 152 1 215 300 50 38 chr4 180533275 180533355 -3755307 + MIR SINE MIR 13 93 -169 243 274 0 111 chr4 180533355 180533472 -3755190 + L1ME LINE L1 5682 5785 -385 1504 178 42 21 chr4 180533556 180533843 -3754819 + AluJo SINE Alu 6 298 -14 252 118 0 0 chr4 180534264 180534298 -3754364 + tRNA-Gln-CAG tRNA tRNA 5 38 -37 446 263 80 60 chr4 180534424 180534536 -3754126 - MER112 DNA MER1_type 0 256 148 2187 96 28 3 chr4 180534536 180534827 -3753835 + AluSx SINE Alu 1 298 -14 446 263 80 60 chr4 180534827 180534965 -3753697 - MER112 DNA MER1_type -108 148 1 1978 151 3 23 chr4 180535162 180535466 -3753196 + AluSx SINE Alu 1 298 -14 2218 86 0 7 chr4 180535770 180536061 -3752601 - AluSg SINE Alu -14 296 8 2300 123 39 46 chr4 180536124 180536503 -3752159 + Tigger1 DNA MER2_type 470 847 -1571 2073 160 0 0 chr4 180536503 180536815 -3751847 + AluSx SINE Alu 1 312 0 2300 123 39 46 chr4 180536815 180536849 -3751813 + Tigger1 DNA MER2_type 847 880 -1538 2262 101 3 0 chr4 180536850 180537147 -3751515 + AluSq SINE Alu 1 298 -15 1774 164 17 0 chr4 180537449 180537742 -3750920 - AluSx SINE Alu -14 298 1 2064 123 17 3 chr4 180538795 180539088 -3749574 - AluSq SINE Alu -16 297 1 536 295 93 59 chr4 180539263 180539454 -3749208 - L1ME LINE L1 -321 5800 5617 1883 96 11 32 chr4 180539454 180539736 -3748926 + AluSx SINE Alu 1 276 -36 536 295 93 59 chr4 180539736 180540039 -3748623 - L1ME LINE L1 -504 5617 5289 401 352 74 32 chr4 180540042 180540539 -3748123 - L1ME LINE L1 -870 5276 4759 33 0 0 0 chr4 180541334 180541367 -3747295 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr4 180541648 180541669 -3746993 + AT_rich Low_complexity Low_complexity 1 21 0 491 190 0 0 chr4 180541826 180541905 -3746757 + AluJ/FLAM SINE Alu 2 80 -232 370 254 131 8 chr4 180542277 180542407 -3746255 + MER117 DNA MER1_type 13 158 -39 451 320 81 30 chr4 180542547 180542781 -3745881 + MIR SINE MIR 7 252 -10 2406 68 7 23 chr4 180543034 180543341 -3745321 + AluY SINE Alu 1 302 -9 1164 229 4 79 chr4 180543378 180543785 -3744877 + L1MC5 LINE L1 6590 6989 -819 921 150 0 3 chr4 180543789 180544101 -3744561 + (TA)n Simple_repeat Simple_repeat 1 312 0 2197 88 11 3 chr4 180544101 180544384 -3744278 - AluSq SINE Alu -26 287 3 1353 221 74 75 chr4 180544422 180544716 -3743946 + L1MC5 LINE L1 6970 7264 -697 1589 73 100 5 chr4 180544716 180544936 -3743726 - AluY SINE Alu -70 241 1 1353 221 74 75 chr4 180544936 180545197 -3743465 + L1MC5 LINE L1 7264 7524 -437 299 294 109 14 chr4 180545486 180545697 -3742965 - MIR SINE MIR -29 233 3 287 295 160 60 chr4 180546781 180546981 -3741681 - L2 LINE L2 -559 2755 2536 1436 170 3 44 chr4 180547000 180547124 -3741538 + AluJo SINE Alu 18 146 -166 1924 171 0 0 chr4 180547124 180547423 -3741239 + AluJb SINE Alu 1 299 -13 1436 170 3 44 chr4 180547423 180547592 -3741070 + AluJo SINE Alu 146 299 -13 2298 68 13 13 chr4 180547877 180548188 -3740474 - AluY SINE Alu 0 311 1 2259 84 3 10 chr4 180548217 180548515 -3740147 + AluY SINE Alu 1 296 -15 2270 113 0 3 chr4 180549790 180550092 -3738570 + AluSx SINE Alu 1 301 -11 285 318 36 18 chr4 180550095 180550205 -3738457 + L2 LINE L2 3160 3271 -1 2250 82 0 3 chr4 180550660 180550942 -3737720 - AluY SINE Alu -26 285 5 2713 13 10 0 chr4 180551189 180551488 -3737174 + AluY SINE Alu 1 302 -9 1599 154 6 64 chr4 180552395 180552609 -3736053 + AluJo SINE Alu 1 193 -119 1957 210 35 35 chr4 180552609 180553067 -3735595 - LTR22A LTR ERVK 0 458 1 1599 154 6 64 chr4 180553067 180553163 -3735499 + AluJo SINE Alu 193 293 -19 257 250 205 20 chr4 180553313 180553513 -3735149 + L1ME4a LINE L1 5710 5946 -175 526 231 115 0 chr4 180553528 180553684 -3734978 - MIR SINE MIR -26 236 63 236 235 59 0 chr4 180553687 180553755 -3734907 + L1ME4a LINE L1 5972 6043 -78 2486 74 0 13 chr4 180554562 180554871 -3733791 + AluSx SINE Alu 1 305 -7 2213 79 7 20 chr4 180555986 180556289 -3732373 + AluY SINE Alu 2 300 -11 351 266 150 34 chr4 180557457 180557690 -3730972 - L2 LINE L2 -4 3309 3050 694 140 9 0 chr4 180558057 180558164 -3730498 - AluJb SINE Alu -203 109 2 35 0 0 0 chr4 180558177 180558212 -3730450 + AT_rich Low_complexity Low_complexity 1 35 0 275 0 0 28 chr4 180558344 180558380 -3730282 + (TG)n Simple_repeat Simple_repeat 2 36 0 438 167 13 133 chr4 180558380 180558530 -3730132 - FLAM_C SINE Alu 0 133 2 397 145 0 0 chr4 180559825 180559887 -3728775 - Alu SINE Alu -7 295 234 773 133 133 0 chr4 180559891 180560042 -3728620 + LTR36 LTR ERV1 1 171 -440 1663 174 0 57 chr4 180560163 180560480 -3728182 + AluJo SINE Alu 3 301 -11 2542 31 7 3 chr4 180560835 180561128 -3727534 + AluY SINE Alu 1 294 -17 1899 147 3 23 chr4 180561676 180561982 -3726680 - AluJb SINE Alu -12 300 1 2311 92 7 3 chr4 180562399 180562704 -3725958 - AluSq SINE Alu -7 306 1 459 208 108 0 chr4 180563032 180563152 -3725510 + FLAM_C SINE Alu 1 133 0 2208 101 0 0 chr4 180563979 180564267 -3724395 - AluSx SINE Alu -24 288 1 2401 97 0 3 chr4 180565159 180565470 -3723192 + AluY SINE Alu 1 310 -1 227 250 25 12 chr4 180565882 180566036 -3722626 + C-rich Low_complexity Low_complexity 1 155 0 324 70 0 0 chr4 180566186 180566229 -3722433 + (TA)n Simple_repeat Simple_repeat 2 44 0 22 0 0 0 chr4 180566229 180566251 -3722411 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 180566441 180566462 -3722200 + AT_rich Low_complexity Low_complexity 1 21 0 183 325 35 44 chr4 180566481 180566595 -3722067 - MIR SINE MIR -142 120 8 2132 85 3 56 chr4 180566985 180567291 -3721371 - AluSx SINE Alu -22 290 1 24 85 0 0 chr4 180567293 180567352 -3721310 + AT_rich Low_complexity Low_complexity 1 59 0 2197 91 3 3 chr4 180567933 180568238 -3720424 + AluSp SINE Alu 1 305 0 312 264 7 81 chr4 180569769 180569917 -3718745 + MIR3 SINE MIR 72 208 0 447 275 77 55 chr4 180570290 180570472 -3718190 - MIR SINE MIR -10 252 67 207 0 0 0 chr4 180570511 180570534 -3718128 + (TC)n Simple_repeat Simple_repeat 2 24 0 1412 204 7 25 chr4 180570534 180570819 -3717843 - AluJo SINE Alu -30 282 3 1520 212 35 33 chr4 180570974 180571431 -3717231 - MLT1C LTR MaLR -4 463 6 405 208 28 35 chr4 180571493 180571637 -3717025 - L1MEd LINE L1 -5022 1097 955 1768 232 92 4 chr4 180571641 180572198 -3716464 - L1ME3A LINE L1 -5 6165 5560 4418 167 73 4 chr4 180572567 180573778 -3714884 - L1MB7 LINE L1 -19 6165 4884 1764 172 0 27 chr4 180573888 180574184 -3714478 + AluJo SINE Alu 1 288 -24 1390 243 84 25 chr4 180574243 180574728 -3713934 + MER68 LTR ERV1 1 514 -48 1591 152 70 42 chr4 180574739 180575094 -3713568 + MLT1A1 LTR MaLR 1 365 0 2120 111 0 0 chr4 180576319 180576599 -3712063 + AluSg SINE Alu 1 280 -30 303 205 0 60 chr4 180576671 180576754 -3711908 - L2 LINE L2 -2918 396 319 182 343 30 0 chr4 180577045 180577112 -3711550 - L2 LINE L2 -1785 1529 1461 1943 112 45 0 chr4 180577663 180577950 -3710712 + AluSx SINE Alu 1 300 -12 480 245 84 75 chr4 180577976 180578311 -3710351 - MER46C DNA MER2_type 0 338 1 424 134 0 45 chr4 180579129 180579241 -3709421 + (CCTA)n Simple_repeat Simple_repeat 1 107 0 38 0 0 33 chr4 180579564 180579587 -3709075 + AT_rich Low_complexity Low_complexity 1 23 -35 2210 103 0 17 chr4 180579587 180579879 -3708783 - AluSc SINE Alu -22 287 1 38 0 0 33 chr4 180579879 180579897 -3708765 + AT_rich Low_complexity Low_complexity 23 40 -18 2251 105 0 13 chr4 180579897 180580210 -3708452 - AluSg SINE Alu -1 309 1 38 0 0 33 chr4 180580210 180580227 -3708435 + AT_rich Low_complexity Low_complexity 40 58 0 2274 110 0 25 chr4 180580929 180581247 -3707415 + AluSx SINE Alu 1 310 -2 4774 207 63 21 chr4 180581492 180582781 -3705881 - L1MC3 LINE L1 0 7785 6443 1984 127 11 3 chr4 180583646 180583930 -3704732 - AluSx SINE Alu -24 288 3 2330 93 0 0 chr4 180584219 180584519 -3704143 - AluSq SINE Alu -5 308 9 514 231 9 0 chr4 180586010 180586146 -3702516 - FLAM_A SINE Alu 0 149 13 635 164 0 0 chr4 180586380 180586490 -3702172 + FLAM_C SINE Alu 27 136 -7 2297 145 26 7 chr4 180586811 180587239 -3701423 - L1MB7 LINE L1 -21 6163 5728 1357 110 143 0 chr4 180587625 180587834 -3700828 - AluSx SINE Alu -73 239 1 236 200 60 0 chr4 180588231 180588281 -3700381 + MER5B DNA MER1_type 2 54 -124 593 247 33 20 chr4 180588764 180588931 -3699731 - MER5B DNA MER1_type 0 189 8 1046 209 14 23 chr4 180589168 180589388 -3699274 - MER20 DNA MER1_type -1 218 1 301 206 0 0 chr4 180589497 180589565 -3699097 - L1MA9 LINE L1 0 6312 6245 970 156 0 24 chr4 180589568 180589735 -3698927 - AluJb SINE Alu -22 290 128 2180 142 78 7 chr4 180589735 180590145 -3698517 - L1MA9 LINE L1 -74 6238 5800 830 240 94 74 chr4 180590145 180590349 -3698313 - MLT1J LTR MaLR -102 409 211 2373 92 0 0 chr4 180590349 180590644 -3698018 - AluSg SINE Alu -15 295 1 830 240 94 74 chr4 180590644 180590831 -3697831 - MLT1J LTR MaLR -300 211 10 536 353 78 5 chr4 180590988 180591206 -3697456 - MIR SINE MIR -6 256 23 205 297 196 14 chr4 180591494 180591632 -3697030 + L3 LINE CR1 1064 1226 -351 306 111 0 0 chr4 180592385 180592430 -3696232 + Alu SINE Alu 245 289 -12 2722 214 100 13 chr4 180592458 180593399 -3695263 - L1ME2 LINE L1 -9 6089 5057 918 210 49 63 chr4 180593392 180593883 -3694779 - L1ME2 LINE L1 -5066 1004 521 * 232 293 65 32 chr4 180594332 180594455 -3694207 - L1ME2 LINE L1 -5846 224 98 237 200 0 22 chr4 180594525 180594570 -3694092 + Tigger5 DNA MER2_type 2280 2323 0 2312 124 55 79 chr4 180594685 180594780 -3693882 - L1MB2 LINE L1 -3 6168 6072 2194 106 0 0 chr4 180594780 180595063 -3693599 - AluSx SINE Alu -29 283 1 2312 124 55 79 chr4 180595063 180595364 -3693298 - L1MB2 LINE L1 -99 6072 5784 357 24 0 0 chr4 180595364 180595406 -3693256 + (TG)n Simple_repeat Simple_repeat 1 42 0 2312 124 55 79 chr4 180595406 180595500 -3693162 - L1MB2 LINE L1 -387 5784 5689 2309 109 0 3 chr4 180597222 180597535 -3691127 - AluSx SINE Alu 0 312 1 194 367 53 24 chr4 180598355 180598524 -3690138 + L2 LINE L2 2590 2763 -551 2409 97 0 0 chr4 180598891 180599200 -3689462 - AluSx SINE Alu -3 309 1 257 111 0 0 chr4 180599262 180599298 -3689364 - Alu SINE Alu -263 36 1 331 200 305 11 chr4 180599479 180599574 -3689088 + MIR3 SINE MIR 8 130 -78 2056 139 7 0 chr4 180600387 180600690 -3687972 - AluJb SINE Alu -7 305 1 978 151 56 36 chr4 180601159 180601410 -3687252 + MER33 DNA MER1_type 1 256 -68 364 133 48 12 chr4 180601452 180601535 -3687127 + MER33 DNA MER1_type 278 363 0 848 173 22 99 chr4 180601680 180601952 -3686710 - LTR41 LTR ERVL -11 762 512 603 251 5 26 chr4 180602108 180602299 -3686363 - LTR41 LTR ERVL -586 187 1 227 261 0 43 chr4 180603785 180603854 -3684808 + MER112 DNA MER1_type 1 66 -194 497 187 20 87 chr4 180604033 180604125 -3684537 - Charlie1 DNA MER1_type 0 2761 2681 777 235 61 0 chr4 180604125 180604321 -3684341 - MER63A DNA MER1_type -1 209 2 497 187 20 87 chr4 180604321 180604378 -3684284 - Charlie1 DNA MER1_type -80 2681 2622 * 721 246 114 0 chr4 180604367 180604578 -3684084 - Charlie1 DNA MER1_type -2526 235 1 207 0 0 0 chr4 180604857 180604880 -3683782 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 417 39 0 0 chr4 180604881 180604932 -3683730 + (TG)n Simple_repeat Simple_repeat 2 52 0 2049 120 23 0 chr4 180604940 180605240 -3683422 - AluSx SINE Alu -5 307 1 297 343 48 0 chr4 180606350 180606496 -3682166 + MIR SINE MIR 66 218 -44 231 228 33 33 chr4 180608661 180608753 -3679909 + (TATG)n Simple_repeat Simple_repeat 4 95 0 829 147 0 29 chr4 180608761 180608897 -3679765 - FLAM_C SINE Alu -1 132 1 3132 115 70 2 chr4 180608966 180609495 -3679167 - Tigger3(Golem) DNA MER2_type -1 3028 2464 880 163 261 5 chr4 180609489 180609692 -3678970 - Tigger3(Golem) DNA MER2_type -2774 255 1 * 2336 95 0 3 chr4 180610131 180610427 -3678235 - AluSx SINE Alu -17 295 1 2051 129 6 31 chr4 180611211 180611529 -3677133 + AluSx SINE Alu 1 310 -2 4346 15 11 0 chr4 180611580 180612045 -3676617 + SVA Other Other 917 1386 0 268 179 24 48 chr4 180612079 180612163 -3676499 + A-rich Low_complexity Low_complexity 2 83 0 672 173 0 0 chr4 180712256 180712435 -3576227 + (GAATG)n Satellite Satellite 1 179 0 933 150 0 3 chr4 180712446 180712970 -3575692 + (GAATG)n Satellite Satellite 1 702 0 882 150 1 7 chr4 180712981 180713747 -3574915 + (GAATG)n Satellite Satellite 2 939 0 873 136 0 0 chr4 180713780 180713957 -3574705 + (GAATG)n Satellite Satellite 4 180 0 754 126 0 38 chr4 180713970 180714234 -3574428 + (GAATG)n Satellite Satellite 1 253 0 880 142 4 4 chr4 180714255 180715165 -3573497 + (GAATG)n Satellite Satellite 1 910 0 1065 130 2 9 chr4 180715195 180715991 -3572671 + (GAATG)n Satellite Satellite 1 968 0 1155 114 0 0 chr4 180716006 180716248 -3572414 + (GAATG)n Satellite Satellite 1 242 0 987 135 0 26 chr4 180716261 180716636 -3572026 + (GAATG)n Satellite Satellite 1 365 0 801 159 0 0 chr4 180716656 180716911 -3571751 + (GAATG)n Satellite Satellite 1 255 0 845 129 6 0 chr4 180716927 180717098 -3571564 + (GAATG)n Satellite Satellite 3 174 0 1137 120 2 4 chr4 180717145 180718049 -3570613 + (GAATG)n Satellite Satellite 3 1080 0 771 155 0 0 chr4 180718089 180718263 -3570399 + (GAATG)n Satellite Satellite 2 175 0 750 162 0 0 chr4 180718280 180718644 -3570018 + (GAATG)n Satellite Satellite 1 364 0 660 165 0 0 chr4 180718655 180718813 -3569849 + (GAATG)n Satellite Satellite 2 159 0 1101 107 19 15 chr4 180718813 180720172 -3568490 - HSATII Satellite Satellite -24 1364 1 906 121 17 22 chr4 180720194 180720605 -3568057 - HSATII Satellite Satellite -1 408 1 1173 106 6 3 chr4 180720627 180721845 -3566817 - HSATII Satellite Satellite 0 2189 786 254 176 45 28 chr4 180721845 180722021 -3566641 + (CGAAT)n Simple_repeat Simple_repeat 2 180 0 1173 106 6 3 chr4 180722021 180722810 -3565852 - HSATII Satellite Satellite -1403 786 1 1134 95 8 6 chr4 180722822 180723350 -3565312 - HSATII Satellite Satellite -23 529 1 1014 108 11 13 chr4 180723376 180725031 -3563631 - HSATII Satellite Satellite 0 1651 1 974 94 6 18 chr4 180725061 180725559 -3563103 - HSATII Satellite Satellite -1 492 1 840 128 23 0 chr4 180725573 180726031 -3562631 - HSATII Satellite Satellite -7 468 1 926 99 37 0 chr4 180726054 180726425 -3562237 - HSATII Satellite Satellite 0 384 1 1188 94 20 12 chr4 180726463 180727524 -3561138 - HSATII Satellite Satellite -50 1069 1 1032 94 20 21 chr4 180727573 180728296 -3560366 - HSATII Satellite Satellite 0 722 1 1170 115 13 10 chr4 180728312 180730776 -3557886 - HSATII Satellite Satellite -107 2473 1 1079 89 25 9 chr4 180730790 180731711 -3556951 - HSATII Satellite Satellite -29 936 1 1038 87 0 25 chr4 180731725 180732202 -3556460 - HSATII Satellite Satellite -1 464 1 284 339 15 0 chr4 180732407 180732537 -3556125 + L1M4 LINE L1 798 929 -5717 1459 234 101 26 chr4 180732718 180733410 -3555252 + L1M4 LINE L1 820 1548 -4994 297 253 20 14 chr4 180733434 180733580 -3555082 + CT-rich Low_complexity Low_complexity 1 147 0 536 323 84 32 chr4 180734015 180734362 -3554300 + L2 LINE L2 2451 2815 -499 266 307 57 14 chr4 180735163 180735303 -3553359 + HERVL LTR ERVL 462 607 -5047 498 330 47 14 chr4 180735639 180735899 -3552763 + HERVL LTR ERVL 2267 2533 -2952 381 230 26 62 chr4 180737715 180737828 -3550834 - MLT1D LTR MaLR -392 113 5 808 266 45 86 chr4 180739141 180739584 -3549078 - MLT1J LTR MaLR -7 504 80 972 199 106 88 chr4 180739828 180740205 -3548457 - MLT1B LTR MaLR 0 390 7 741 206 261 93 chr4 180742733 180743060 -3545602 + L1MB5 LINE L1 5651 6072 -102 1699 142 21 25 chr4 180743060 180743342 -3545320 - AluJo SINE Alu -31 281 1 741 206 261 93 chr4 180743342 180743455 -3545207 + L1MB5 LINE L1 6072 6165 -9 209 146 21 0 chr4 180743459 180743507 -3545155 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 413 207 24 35 chr4 180743565 180743633 -3545029 + (TAGA)n Simple_repeat Simple_repeat 3 70 -99 701 223 0 0 chr4 180743633 180743754 -3544908 - FLAM_A SINE Alu -11 122 2 413 207 24 35 chr4 180743754 180743854 -3544808 + (TAGA)n Simple_repeat Simple_repeat 70 169 0 182 128 26 0 chr4 180743924 180743963 -3544699 + (ATTG)n Simple_repeat Simple_repeat 3 42 0 26 30 0 0 chr4 180744711 180744744 -3543918 + AT_rich Low_complexity Low_complexity 1 33 0 1841 125 66 0 chr4 180744755 180745042 -3543620 + AluSx SINE Alu 1 306 -6 1686 170 52 0 chr4 180745228 180745516 -3543146 + AluSx SINE Alu 1 303 -9 479 232 38 111 chr4 180745550 180745765 -3542897 + L1M4 LINE L1 3161 3339 -3305 897 112 0 16 chr4 180745765 180745890 -3542772 + FLAM_C SINE Alu 1 123 -10 479 232 38 111 chr4 180745890 180746045 -3542617 + L1M4 LINE L1 3339 3504 -3140 2202 119 0 13 chr4 180746060 180746370 -3542292 + AluSq SINE Alu 1 306 -7 405 195 203 0 chr4 180746660 180746778 -3541884 + MLT1B LTR MaLR 178 319 -71 230 319 77 11 chr4 180747109 180747200 -3541462 + L2 LINE L2 3133 3229 -43 207 319 22 33 chr4 180747530 180747621 -3541041 + L2 LINE L2 3183 3272 0 1056 62 0 0 chr4 180747630 180747758 -3540904 + AluY SINE Alu 1 128 -183 9221 184 32 11 chr4 180748343 180751964 -3536698 + L1PBa LINE L1 989 4872 -1990 1606 249 186 22 chr4 180751966 180752330 -3536332 - TAR1 Satellite telomeric -458 423 1 22 0 0 0 chr4 180752669 180752691 -3535971 + AT_rich Low_complexity Low_complexity 1 22 0 1819 181 3 13 chr4 180753012 180753327 -3535335 - AluSx SINE Alu 0 312 1 21 36 0 0 chr4 180753840 180753868 -3534794 + AT_rich Low_complexity Low_complexity 1 28 0 986 200 28 90 chr4 180754686 180754941 -3533721 + MER8 DNA MER2_type 1 239 0 539 198 25 66 chr4 180755064 180755185 -3533477 + FLAM_A SINE Alu 1 116 -17 184 292 14 42 chr4 180755407 180755479 -3533183 - MIR SINE MIR -6 256 187 1702 163 17 24 chr4 180756962 180757257 -3531405 + AluJb SINE Alu 1 293 -19 1673 168 3 7 chr4 180758472 180758757 -3529905 - AluJo SINE Alu -26 286 3 2012 151 3 19 chr4 180759400 180759717 -3528945 + AluSx SINE Alu 1 312 0 501 311 102 39 chr4 180759741 180760035 -3528627 + L1 LINE L1 3359 3633 -2513 1841 124 106 0 chr4 180760035 180760310 -3528352 + AluSx SINE Alu 1 304 -8 501 311 102 39 chr4 180760310 180760758 -3527904 + L1 LINE L1 3633 4148 -1998 338 292 205 49 chr4 180760955 180761065 -3527597 + L1 LINE L1 4383 4474 -1672 1316 172 137 0 chr4 180761065 180761181 -3527481 + AluJb SINE Alu 1 100 -212 207 0 0 0 chr4 180761181 180761204 -3527458 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1316 172 137 0 chr4 180761204 180761349 -3527313 + AluJb SINE Alu 100 298 -14 338 292 205 49 chr4 180761349 180761628 -3527034 + L1 LINE L1 4474 4833 -1313 253 297 0 54 chr4 180762055 180762129 -3526533 - L2 LINE L2 -1391 1923 1854 2206 192 38 26 chr4 180762279 180762780 -3525882 + LTR55 LTR ERV 5 511 -37 318 273 84 13 chr4 180762822 180762976 -3525686 + L1M4 LINE L1 2435 2599 -3547 569 279 82 19 chr4 180762981 180763300 -3525362 + L1M4 LINE L1 2669 3007 -3139 327 333 33 7 chr4 180763300 180763453 -3525209 + MERVL LTR ERVL 2573 2729 -2756 975 341 38 66 chr4 180763570 180764081 -3524581 + MERVL LTR ERVL 3022 3511 -2253 1917 144 60 38 chr4 180764081 180764448 -3524214 - THE1C LTR MaLR 0 375 1 975 341 38 66 chr4 180764448 180764617 -3524045 + MERVL LTR ERVL 3511 3683 -2081 8310 148 27 8 chr4 180764714 180767123 -3521539 + L1MA8 LINE L1 3824 6287 -4 2225 100 7 19 chr4 180767162 180767471 -3521191 + AluY SINE Alu 1 305 -6 700 286 40 16 chr4 180767471 180767714 -3520948 + MERVL LTR ERVL 3793 4044 -1720 1139 313 23 25 chr4 180767760 180768153 -3520509 + MERVL LTR ERVL 4125 4516 -1248 229 261 11 34 chr4 180768941 180769029 -3519633 + LTR16A1 LTR ERVL 56 141 -316 327 263 83 0 chr4 180769258 180769383 -3519279 + MIR3 SINE MIR 63 201 -7 3737 140 24 45 chr4 180769487 180770160 -3518502 + L1MC2 LINE L1 5679 6337 -7 233 269 69 36 chr4 180770163 180770552 -3518110 + L1MC4 LINE L1 7133 7587 -455 2168 117 0 3 chr4 180770552 180770851 -3517811 + AluSc SINE Alu 1 298 -11 233 269 69 36 chr4 180770851 180770997 -3517665 + L1MC4 LINE L1 7587 7727 -315 254 111 0 0 chr4 180770997 180771033 -3517629 - Tigger3(Golem) DNA MER2_type -75 2954 2919 2040 121 18 0 chr4 180771043 180771325 -3517337 - AluSx SINE Alu -25 287 1 333 238 12 12 chr4 180771463 180771543 -3517119 - Tigger3(Golem) DNA MER2_type -2949 80 1 429 297 139 8 chr4 180771578 180771837 -3516825 + L1MC4 LINE L1 7644 8042 0 2372 157 37 10 chr4 180772676 180773077 -3515585 - MER61B LTR ERV1 -13 412 1 2013 115 14 0 chr4 180775080 180775391 -3513271 - AluY SINE Alu 0 315 1 44 56 0 0 chr4 180775444 180775516 -3513146 + AT_rich Low_complexity Low_complexity 1 72 0 2292 93 0 0 chr4 180775772 180776061 -3512601 - AluSg SINE Alu -10 300 12 24 32 0 0 chr4 180776825 180776856 -3511806 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr4 180777286 180777312 -3511350 + AT_rich Low_complexity Low_complexity 1 26 0 449 330 116 5 chr4 180778140 180778355 -3510307 + MIR SINE MIR 5 243 -19 365 290 20 0 chr4 180778952 180779052 -3509610 - MIR SINE MIR -14 248 147 24 32 0 0 chr4 180779283 180779314 -3509348 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 180779374 180779395 -3509267 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 180779644 180779674 -3508988 + AT_rich Low_complexity Low_complexity 1 30 0 649 297 52 18 chr4 180779707 180779936 -3508726 - MIR SINE MIR -14 248 12 282 266 26 97 chr4 180780101 180780214 -3508448 - L2 LINE L2 -30 3242 3138 1847 151 3 10 chr4 180780349 180780641 -3508021 - AluJb SINE Alu -22 290 1 1543 213 9 19 chr4 180780841 180780979 -3507683 + AluJb SINE Alu 1 139 -173 2329 102 6 10 chr4 180780979 180781292 -3507370 + AluSx SINE Alu 1 312 0 1543 213 9 19 chr4 180781292 180781468 -3507194 + AluJb SINE Alu 139 312 0 946 157 0 0 chr4 180781490 180781637 -3507025 - AluSg/x SINE Alu -2 310 164 1996 140 3 0 chr4 180782223 180782509 -3506153 - AluSx SINE Alu -25 287 1 31 76 0 0 chr4 180782728 180782794 -3505868 + AT_rich Low_complexity Low_complexity 1 66 0 1530 193 27 17 chr4 180782997 180783298 -3505364 - AluJo SINE Alu -8 304 1 27 29 0 0 chr4 180783332 180783366 -3505296 + AT_rich Low_complexity Low_complexity 1 34 0 238 152 0 0 chr4 180784637 180784683 -3503979 - LTR66 LTR ERVL -171 439 394 251 200 17 17 chr4 180784730 180784790 -3503872 + (TA)n Simple_repeat Simple_repeat 1 60 0 572 268 91 86 chr4 180784791 180785198 -3503464 + L1MC/D LINE L1 4960 5368 -778 401 265 181 29 chr4 180785334 180785452 -3503210 + L1MC/D LINE L1 5493 5592 -2216 682 189 0 16 chr4 180785452 180785579 -3503083 + FLAM_C SINE Alu 2 126 -7 401 265 181 29 chr4 180785579 180785610 -3503052 + L1MC/D LINE L1 5592 5617 -2191 2038 125 0 0 chr4 180785610 180785891 -3502771 + AluSq SINE Alu 22 302 -11 401 265 181 29 chr4 180785891 180785978 -3502684 + L1MC/D LINE L1 5617 5766 -2042 2121 122 0 25 chr4 180786090 180786411 -3502251 - AluSq SINE Alu 0 313 1 38 61 0 0 chr4 180786441 180786507 -3502155 + AT_rich Low_complexity Low_complexity 1 66 0 21 57 0 0 chr4 180786899 180786934 -3501728 + AT_rich Low_complexity Low_complexity 1 35 0 1882 166 0 0 chr4 180788149 180788444 -3500218 + AluSx SINE Alu 3 297 -15 30 0 0 0 chr4 180788715 180788745 -3499917 + AT_rich Low_complexity Low_complexity 1 30 0 1267 186 102 7 chr4 180788893 180789178 -3499484 + AluJo SINE Alu 1 312 0 362 308 66 24 chr4 180789189 180789400 -3499262 + L1 LINE L1 173 392 -5921 4581 248 65 20 chr4 180789702 180790170 -3498492 + L1 LINE L1 798 1244 -5138 3032 174 19 74 chr4 180790170 180790901 -3497761 - LTR8 LTR ERV1 0 691 1 4581 248 65 20 chr4 180790901 180791657 -3497005 + L1 LINE L1 1244 1965 -4417 1733 177 47 7 chr4 180791657 180791957 -3496705 - AluJo SINE Alu 0 312 1 4581 248 65 20 chr4 180791957 180793110 -3495552 + L1 LINE L1 1965 3131 -3251 1738 231 25 111 chr4 180793110 180793689 -3494973 + MLT2B3 LTR ERVL 1 486 -34 320 159 0 5 chr4 180793726 180793794 -3494868 + MLT2B2 LTR ERVL 455 515 0 1737 241 76 7 chr4 180793796 180794047 -3494615 + L1 LINE L1 3129 3361 -3021 2131 102 10 3 chr4 180794047 180794351 -3494311 + AluSp SINE Alu 1 306 -7 1737 241 76 7 chr4 180794351 180794679 -3493983 + L1 LINE L1 3361 3748 -2634 439 162 106 70 chr4 180794674 180794771 -3493891 + L1 LINE L1 5466 5571 -811 * 1616 204 42 8 chr4 180794771 180795124 -3493538 + MLT1A1 LTR MaLR 1 365 0 439 162 106 70 chr4 180795124 180795168 -3493494 + L1 LINE L1 5571 5612 -770 2586 149 24 82 chr4 180795179 180795688 -3492974 - THE1-int LTR MaLR -755 825 347 37173 95 7 6 chr4 180795693 180801831 -3486831 + L1PA5 LINE L1 11 6151 -3 13222 63 7 1 chr4 180801977 180804508 -3484154 + L1PA6 LINE L1 3606 6161 0 2255 140 4 0 chr4 180804511 180804879 -3483783 - THE1-int LTR MaLR -1210 370 1 1911 169 32 46 chr4 180804879 180805443 -3483219 - MLT2A2 LTR ERVL 0 554 1 388 287 49 20 chr4 180805535 180805680 -3482982 + MIR SINE MIR 3 148 -60 1957 141 7 3 chr4 180805793 180806091 -3482571 - AluSx SINE Alu -13 299 1 452 274 171 29 chr4 180806305 180806684 -3481978 + L1ME LINE L1 5283 5715 -406 35 0 0 22 chr4 180806684 180806699 -3481963 + AT_rich Low_complexity Low_complexity 1 15 -30 1858 116 62 14 chr4 180806699 180806975 -3481687 - AluSx SINE Alu -23 289 1 35 0 0 22 chr4 180806975 180807005 -3481657 + AT_rich Low_complexity Low_complexity 15 45 0 2260 99 0 10 chr4 180807212 180807515 -3481147 + AluY SINE Alu 1 300 -11 360 45 104 0 chr4 180807574 180807641 -3481021 + GA-rich Low_complexity Low_complexity 2 75 0 464 233 149 81 chr4 180809370 180809679 -3478983 + LTR16A1 LTR ERVL 1 330 -127 204 205 0 0 chr4 180809679 180809718 -3478944 - MER5B DNA MER1_type 0 178 140 885 204 284 11 chr4 180809719 180810004 -3478658 - MLT1F LTR MaLR 0 542 180 1100 135 0 0 chr4 180810174 180810330 -3478332 - AluSq SINE Alu -157 156 1 288 209 79 43 chr4 180810331 180810470 -3478192 + L1MB8 LINE L1 4533 4676 -1470 338 304 141 48 chr4 180810512 180810776 -3477886 + L1MB8 LINE L1 4747 5058 -1088 1427 154 143 0 chr4 180810776 180811035 -3477627 + AluSg SINE Alu 1 296 -4 338 304 141 48 chr4 180811035 180811145 -3477517 + L1MB8 LINE L1 5058 5156 -990 627 261 47 50 chr4 180811397 180811696 -3476966 + L1MB8 LINE L1 5310 5607 -514 315 302 48 24 chr4 180811779 180811905 -3476757 + L1MB8 LINE L1 5768 5896 -282 14128 215 29 42 chr4 180812181 180813327 -3475335 + L1PA15 LINE L1 1287 2446 -4370 2050 143 0 0 chr4 180813327 180813620 -3475042 - AluSg SINE Alu -17 293 1 14128 215 29 42 chr4 180813620 180813647 -3475015 + L1PA15 LINE L1 2446 2472 -4344 2256 103 3 0 chr4 180813647 180813949 -3474713 + AluSc SINE Alu 1 303 -6 14128 215 29 42 chr4 180813949 180817719 -3470943 + L1PA15 LINE L1 2472 6166 -650 893 158 0 20 chr4 180817723 180817875 -3470787 + AluSg/x SINE Alu 162 310 0 5818 161 23 23 chr4 180817875 180819655 -3469007 + L1PB1 LINE L1 4017 5791 -360 270 176 0 0 chr4 180819655 180819706 -3468956 + (TA)n Simple_repeat Simple_repeat 2 52 0 2430 100 3 41 chr4 180819708 180820099 -3468563 + L1PB1 LINE L1 5776 6151 0 2741 146 5 0 chr4 180820099 180820539 -3468123 + L1PA15 LINE L1 6369 6816 0 25 95 0 0 chr4 180820613 180820687 -3467975 + AT_rich Low_complexity Low_complexity 1 74 0 229 253 11 22 chr4 180820930 180821021 -3467641 + (TA)n Simple_repeat Simple_repeat 1 90 0 24 32 0 0 chr4 180821651 180821682 -3466980 + AT_rich Low_complexity Low_complexity 1 31 0 1447 24 0 0 chr4 180822229 180822399 -3466263 - L1PA2 LINE L1 0 6155 5986 1174 145 0 5 chr4 180822416 180822602 -3466060 - AluSg/x SINE Alu -2 308 124 237 162 0 0 chr4 180822602 180822639 -3466023 - Alu SINE Alu -138 165 129 203 339 188 34 chr4 180823091 180823416 -3465246 - L2 LINE L2 -416 2898 2524 1495 175 86 0 chr4 180823499 180823768 -3464894 - AluJo SINE Alu -20 292 1 3200 142 25 2 chr4 180823800 180824330 -3464332 - MER6 DNA MER2_type 0 865 324 756 204 136 9 chr4 180824375 180824464 -3464198 + L1 LINE L1 3589 3665 -2481 279 54 0 0 chr4 180824464 180824501 -3464161 + (CA)n Simple_repeat Simple_repeat 1 37 0 756 204 136 9 chr4 180824501 180824631 -3464031 + L1 LINE L1 3665 3836 -2310 2699 146 41 14 chr4 180824632 180825125 -3463537 + L1PA16 LINE L1 5661 6166 0 22 35 0 0 chr4 180825148 180825177 -3463485 + AT_rich Low_complexity Low_complexity 1 29 0 2322 97 3 10 chr4 180825819 180826130 -3462532 + AluSx SINE Alu 1 309 -3 543 325 42 42 chr4 180826798 180826851 -3461811 + L1MEd LINE L1 324 376 -5743 2159 123 0 10 chr4 180826851 180827183 -3461479 + AluSq SINE Alu 1 313 0 543 325 42 42 chr4 180827183 180827461 -3461201 + L1MEd LINE L1 375 655 -5464 416 270 83 68 chr4 180827468 180827923 -3460739 + L1MEd LINE L1 795 1256 -4863 535 329 63 33 chr4 180827928 180828290 -3460372 + HAL1 LINE L1 1373 1745 -762 238 269 33 93 chr4 180828465 180828603 -3460059 + L1M4 LINE L1 91 217 -6642 2480 107 6 6 chr4 180828603 180828958 -3459704 + THE1A LTR MaLR 1 355 0 238 269 33 93 chr4 180828958 180829001 -3459661 + L1M4 LINE L1 217 261 -6598 779 103 0 0 chr4 180829232 180829339 -3459323 + L1PA8 LINE L1 6066 6172 0 1282 14 10 33 chr4 180829359 180829570 -3459092 + (GAAA)n Simple_repeat Simple_repeat 1 206 0 1861 187 52 16 chr4 180829609 180829973 -3458689 + MER68 LTR ERV1 116 492 -70 2336 233 97 10 chr4 180830367 180831415 -3457247 + L1M4 LINE L1 1266 2409 -4550 396 59 0 0 chr4 180831417 180831468 -3457194 + (TG)n Simple_repeat Simple_repeat 2 52 0 424 247 0 32 chr4 180831648 180831741 -3456921 + FLAM_A SINE Alu 23 112 -30 789 126 8 0 chr4 180831741 180831860 -3456802 + MSTA LTR MaLR 1 120 -308 1113 93 7 0 chr4 180831864 180832004 -3456658 - AluSp SINE Alu -172 141 1 214 100 60 20 chr4 180832564 180832614 -3456048 + CT-rich Low_complexity Low_complexity 4 55 0 784 46 9 37 chr4 180832686 180832794 -3455868 - L1PA7 LINE L1 0 6154 6050 4005 248 56 29 chr4 180834748 180836163 -3452499 + L1M4 LINE L1 3764 5216 -1741 1792 167 66 67 chr4 180836164 180836573 -3452089 - MSTB2 LTR MaLR 0 457 28 5214 207 49 109 chr4 180836596 180838353 -3450309 - MSTB2-int LTR MaLR 0 1651 1 1869 196 90 17 chr4 180838353 180838766 -3449896 - MSTB2 LTR MaLR 0 457 15 2709 217 63 13 chr4 180838768 180839532 -3449130 + L1M4 LINE L1 5212 6013 -944 8600 146 57 22 chr4 180839542 180841022 -3447640 + L1P LINE L1 11 1541 -4605 * 15642 45 42 0 chr4 180841019 180842985 -3445677 - L1P LINE L1 -1043 5103 3055 16712 74 1 5 chr4 180842985 180845222 -3443440 + L1P LINE L1 1630 3859 -2287 1192 128 45 0 chr4 180845228 180845407 -3443255 - AluSx SINE Alu -125 187 1 715 259 22 13 chr4 180845428 180845652 -3443010 + L1ME1 LINE L1 5936 6161 -5 1401 287 118 29 chr4 180845954 180846821 -3441841 + L1M4 LINE L1 2111 2899 -3247 2181 125 0 3 chr4 180846821 180847124 -3441538 + AluSx SINE Alu 5 306 -6 1401 287 118 29 chr4 180847124 180847829 -3440833 + L1M4 LINE L1 2899 3823 -2323 1472 194 10 38 chr4 180847857 180848171 -3440491 - AluJo SINE Alu -7 305 1 423 0 0 0 chr4 180848419 180848466 -3440196 + (TA)n Simple_repeat Simple_repeat 2 48 0 1753 115 11 27 chr4 180848470 180848731 -3439931 - AluSx SINE Alu -55 257 1 325 307 78 50 chr4 180848741 180849060 -3439602 - L2 LINE L2 -1072 2242 1915 1477 137 0 0 chr4 180849934 180850146 -3438516 - AluSg/x SINE Alu -14 296 85 1887 164 56 19 chr4 180850720 180851079 -3437583 - THE1C LTR MaLR -3 372 1 834 225 0 0 chr4 180852078 180852251 -3436411 - FRAM SINE Alu -9 167 1 2080 148 3 0 chr4 180852293 180852598 -3436064 - AluSq SINE Alu -7 306 1 425 125 0 16 chr4 180852807 180852871 -3435791 - AluJ/FLAM SINE Alu -247 65 3 313 202 24 24 chr4 180852871 180852995 -3435667 + CT-rich Low_complexity Low_complexity 4 127 0 1555 164 32 43 chr4 180852995 180853137 -3435525 - AluJo SINE Alu -34 278 139 2303 109 3 0 chr4 180853137 180853441 -3435221 - AluSx SINE Alu -7 305 1 1555 164 32 43 chr4 180853441 180853579 -3435083 - AluJo SINE Alu -173 139 1 1925 170 0 0 chr4 180855083 180855377 -3433285 - AluSx SINE Alu -18 294 1 1923 149 0 29 chr4 180855926 180856235 -3432427 - AluSx SINE Alu -12 300 1 643 277 62 55 chr4 180856523 180856812 -3431850 - MER46C DNA MER2_type 0 338 48 296 290 40 30 chr4 180856899 180856999 -3431663 - MIR SINE MIR -89 119 19 2183 125 6 6 chr4 180857379 180857690 -3430972 - AluSq SINE Alu -2 311 1 2036 191 55 41 chr4 180857745 180857909 -3430753 + MLT1D LTR MaLR 3 163 -342 2098 110 13 10 chr4 180857909 180858208 -3430454 - AluSq SINE Alu -13 300 1 2036 191 55 41 chr4 180858208 180858270 -3430392 + MLT1D LTR MaLR 163 223 -282 2042 162 61 8 chr4 180858270 180858646 -3430016 - MSTD LTR MaLR 0 396 1 2036 191 55 41 chr4 180858646 180858911 -3429751 + MLT1D LTR MaLR 223 502 -3 2049 135 17 0 chr4 180859038 180859327 -3429335 + AluSx SINE Alu 1 294 -18 303 311 28 0 chr4 180859523 180859629 -3429033 + MIR SINE MIR 57 165 -97 1070 266 141 33 chr4 180859982 180860437 -3428225 + MLT1K LTR MaLR 1 504 -84 2254 112 0 7 chr4 180860527 180860822 -3427840 + AluSg SINE Alu 1 293 -17 19464 38 1 1 chr4 180860823 180863930 -3424732 + L1PA3 LINE L1 3042 6151 0 207 0 0 0 chr4 180863930 180863953 -3424709 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 2083 161 77 15 chr4 180864285 180864534 -3424128 + Tigger3b DNA MER2_type 1 286 -2742 1931 157 0 0 chr4 180864534 180864827 -3423835 - AluSx SINE Alu -19 293 1 2083 161 77 15 chr4 180864827 180864982 -3423680 + Tigger3b DNA MER2_type 286 430 -801 1960 110 0 4 chr4 180864984 180865247 -3423415 - AluSq SINE Alu -50 263 2 2495 122 92 24 chr4 180865265 180865733 -3422929 + Tigger3b DNA MER2_type 730 1229 -3 214 355 18 36 chr4 180865765 180865931 -3422731 - MIR SINE MIR -88 174 12 2280 71 20 0 chr4 180866039 180866333 -3422329 + AluY SINE Alu 1 300 -11 210 136 0 0 chr4 180867189 180867233 -3421429 + (TG)n Simple_repeat Simple_repeat 2 45 0 258 333 54 0 chr4 180867798 180867891 -3420771 + L2 LINE L2 3166 3263 -9 1240 192 35 52 chr4 180868092 180868379 -3420283 + AluJo SINE Alu 1 282 -30 2077 146 0 3 chr4 180868650 180868959 -3419703 - AluSx SINE Alu -4 308 1 1749 136 45 17 chr4 180868962 180869249 -3419413 - AluSx SINE Alu -17 295 1 804 115 0 0 chr4 180869403 180869525 -3419137 + (TA)n Simple_repeat Simple_repeat 2 123 0 2084 139 0 3 chr4 180869525 180869820 -3418842 - AluSx SINE Alu -18 294 1 552 222 0 48 chr4 180869829 180869955 -3418707 - FLAM_A SINE Alu -12 121 2 23 33 0 0 chr4 180869955 180869985 -3418677 + AT_rich Low_complexity Low_complexity 1 30 0 2384 193 35 46 chr4 180870128 180870720 -3417942 - L1MB7 LINE L1 0 6184 5599 942 165 0 30 chr4 180870721 180870885 -3417777 - AluJo SINE Alu -148 164 6 598 118 0 0 chr4 180870916 180871001 -3417661 - AluJb SINE Alu -18 294 210 4404 217 64 12 chr4 180871007 180872196 -3416466 - L1MB7 LINE L1 -2111 4035 2785 739 279 70 26 chr4 180872328 180872681 -3415981 + HSREP522 Satellite telomeric 1 368 -226 385 199 2 83 chr4 180873506 180873969 -3414693 + (CCCTG)n Simple_repeat Simple_repeat 1 425 0 190 143 41 0 chr4 180873977 180874026 -3414636 + (CCCTAG)n Simple_repeat Simple_repeat 2 52 0 371 183 0 91 chr4 180874087 180874284 -3414378 + (CCCTG)n Simple_repeat Simple_repeat 1 179 0 * 420 257 53 0 chr4 180874246 180874398 -3414264 + (CCCTAG)n Simple_repeat Simple_repeat 1 160 0 190 111 0 44 chr4 180874454 180874499 -3414163 + (CCCTG)n Simple_repeat Simple_repeat 3 45 0 224 245 78 0 chr4 180874524 180874626 -3414036 + (CCCTAG)n Simple_repeat Simple_repeat 1 110 0 234 129 0 43 chr4 180874670 180874740 -3413922 + (CCCTG)n Simple_repeat Simple_repeat 1 67 0 423 259 45 10 chr4 180874741 180875099 -3413563 + (CCCTAG)n Simple_repeat Simple_repeat 1 370 0 409 165 5 88 chr4 180875138 180875332 -3413330 + (CCCTG)n Simple_repeat Simple_repeat 2 179 0 401 264 50 0 chr4 180875272 180875431 -3413231 + (CCCTAG)n Simple_repeat Simple_repeat 6 172 0 * 314 279 39 8 chr4 180875442 180875571 -3413091 + (CCCTAG)n Simple_repeat Simple_repeat 6 138 0 215 162 0 78 chr4 180875586 180875740 -3412922 + (CCCTG)n Simple_repeat Simple_repeat 1 142 0 352 265 28 44 chr4 180875746 180875927 -3412735 + (CCCTAG)n Simple_repeat Simple_repeat 1 178 0 331 278 53 6 chr4 180875962 180876266 -3412396 + (CCCTAG)n Simple_repeat Simple_repeat 1 318 0 383 281 53 6 chr4 180876310 180876481 -3412181 + (CCCTAG)n Simple_repeat Simple_repeat 2 180 0 229 152 0 54 chr4 180876486 180876578 -3412084 + (CCCTG)n Simple_repeat Simple_repeat 5 91 0 339 241 72 6 chr4 180876651 180876817 -3411845 + (CCCTAG)n Simple_repeat Simple_repeat 2 178 0 338 285 44 0 chr4 180877030 180877167 -3411495 + (CTAGGG)n Simple_repeat Simple_repeat 5 147 0 366 275 16 77 chr4 180877298 180877480 -3411182 - MIR SINE MIR 0 262 92 803 126 0 17 chr4 180877482 180877601 -3411061 + AluSq/x SINE Alu 17 133 -179 202 224 66 0 chr4 180877655 180877731 -3410931 + (CTAGGG)n Simple_repeat Simple_repeat 3 83 0 229 215 0 74 chr4 180877740 180877861 -3410801 + (CCCTG)n Simple_repeat Simple_repeat 1 112 0 204 111 0 0 chr4 180877883 180877919 -3410743 + (CCCTG)n Simple_repeat Simple_repeat 1 36 0 268 122 0 73 chr4 180878185 180878308 -3410354 + (CCCTG)n Simple_repeat Simple_repeat 1 114 0 225 189 0 53 chr4 180878479 180878611 -3410051 + (CCCTG)n Simple_repeat Simple_repeat 2 126 0 283 279 54 8 chr4 180878619 180878748 -3409914 + (CCCTAG)n Simple_repeat Simple_repeat 2 136 0 207 127 0 82 chr4 180878889 180878999 -3409663 + (CCCTG)n Simple_repeat Simple_repeat 1 101 0 266 118 0 85 chr4 180879128 180879281 -3409381 + (CCCTG)n Simple_repeat Simple_repeat 1 140 0 241 336 44 0 chr4 180879286 180879423 -3409239 + (CCCTAG)n Simple_repeat Simple_repeat 6 148 0 22 56 0 0 chr4 180879817 180879853 -3408809 + AT_rich Low_complexity Low_complexity 1 36 0 674 209 26 0 chr4 180879853 180880011 -3408651 + FLAM_C SINE Alu 1 161 0 1537 196 52 0 chr4 180880011 180880381 -3408281 + AluJo SINE Alu 1 385 0 312 129 88 47 chr4 180880479 180880650 -3408012 + (AAATG)n Simple_repeat Simple_repeat 1 178 0 609 105 70 35 chr4 180880663 180880835 -3407827 + (AAATG)n Simple_repeat Simple_repeat 1 178 0 946 90 58 18 chr4 180880856 180881245 -3407417 + (AAATG)n Simple_repeat Simple_repeat 1 587 0 505 120 84 18 chr4 180881257 180881424 -3407238 + (AAATG)n Simple_repeat Simple_repeat 1 178 0 679 136 59 0 chr4 180881429 180881598 -3407064 + (AGATG)n Simple_repeat Simple_repeat 1 179 0 222 95 63 32 chr4 180881610 180881673 -3406989 + (AGATG)n Simple_repeat Simple_repeat 5 69 0 838 79 88 9 chr4 180881680 180882002 -3406660 + (AAATG)n Simple_repeat Simple_repeat 1 347 0 258 123 105 0 chr4 180882002 180882059 -3406603 + (AGATG)n Simple_repeat Simple_repeat 5 67 0 666 81 69 29 chr4 180882066 180882239 -3406423 + (AAATG)n Simple_repeat Simple_repeat 1 180 0 653 67 85 24 chr4 180882267 180882431 -3406231 + (AAATG)n Simple_repeat Simple_repeat 5 178 0 661 134 49 6 chr4 180882482 180882646 -3406016 + (AAATG)n Simple_repeat Simple_repeat 5 175 0 630 94 39 55 chr4 180882679 180882860 -3405802 + (AAATG)n Simple_repeat Simple_repeat 1 178 0 447 108 83 8 chr4 180882841 180882961 -3405701 + (AGATG)n Simple_repeat Simple_repeat 5 133 0 * 27 29 0 0 chr4 180883014 180883048 -3405614 + AT_rich Low_complexity Low_complexity 1 34 0 2478 213 30 24 chr4 180883688 180884398 -3404264 - L1 LINE L1 -1549 4597 3884 3215 188 3 14 chr4 180884400 180885059 -3403603 + L1MA5 LINE L1 5642 6293 -7 197 343 0 0 chr4 180885377 180885447 -3403215 + MIR SINE MIR 185 254 -8 2028 150 0 0 chr4 180885619 180885912 -3402750 - AluSx SINE Alu -19 293 1 1696 177 10 27 chr4 180886282 180886582 -3402080 + AluSp SINE Alu 1 295 -18 24 77 0 0 chr4 180887054 180887106 -3401556 + AT_rich Low_complexity Low_complexity 1 52 0 242 319 22 0 chr4 180888617 180888708 -3399954 + L2 LINE L2 3216 3308 -5 6180 43 0 1 chr4 180889464 180890212 -3398450 - L1PA5 LINE L1 0 6154 5408 773 259 22 26 chr4 180891007 180891277 -3397385 + MER34C LTR ERV1 159 427 -158 2184 133 0 3 chr4 180892197 180892506 -3396156 - AluSq SINE Alu -5 308 1 248 290 121 32 chr4 180893119 180893243 -3395419 - L2 LINE L2 -6 3307 3173 1364 194 102 9 chr4 180893953 180894268 -3394394 - MER2 DNA MER2_type -1 344 1 400 274 101 42 chr4 180894525 180894933 -3393729 - L1ME4a LINE L1 0 6121 5690 320 189 14 40 chr4 180894986 180895060 -3393602 + L2 LINE L2 3241 3312 -1 937 181 0 44 chr4 180896731 180896913 -3391749 + AluJo SINE Alu 1 174 -138 302 85 0 0 chr4 180896915 180896962 -3391700 - FRAM/FAM SINE Alu -78 88 42 950 291 42 2 chr4 180896971 180897400 -3391262 - L1ME4a LINE L1 -469 5701 5256 2193 110 13 0 chr4 180897658 180897957 -3390705 - AluSq SINE Alu -10 303 1 329 239 54 0 chr4 180898132 180898224 -3390438 + L1MC4 LINE L1 6608 6704 -1338 189 115 33 16 chr4 180898225 180898286 -3390376 + (TA)n Simple_repeat Simple_repeat 1 62 0 216 0 0 0 chr4 180899198 180899222 -3389440 + (CA)n Simple_repeat Simple_repeat 2 25 0 1646 175 36 23 chr4 180899264 180899572 -3389090 + AluJb SINE Alu 1 312 0 548 84 12 0 chr4 180899582 180899665 -3388997 + (GGAA)n Simple_repeat Simple_repeat 2 85 0 236 264 92 11 chr4 180899715 180899802 -3388860 + MLT1L LTR MaLR 105 198 -417 350 174 294 0 chr4 180899901 180899993 -3388669 + MSTA LTR MaLR 286 404 -24 261 0 0 0 chr4 180900850 180900879 -3387783 + (T)n Simple_repeat Simple_repeat 1 29 0 651 164 185 0 chr4 180900879 180901025 -3387637 + MSTA LTR MaLR 256 428 0 306 182 0 78 chr4 180901812 180901889 -3386773 + MER115 DNA AcHobo 509 579 -114 349 244 41 0 chr4 180901930 180902053 -3386609 + MER115 DNA AcHobo 558 685 -8 25 0 0 0 chr4 180902257 180902282 -3386380 + AT_rich Low_complexity Low_complexity 1 25 0 342 115 0 0 chr4 180902433 180902485 -3386177 + (TG)n Simple_repeat Simple_repeat 1 52 0 613 256 0 8 chr4 180902657 180902778 -3385884 + FLAM_A SINE Alu 1 120 -13 24 0 0 0 chr4 180902788 180902812 -3385850 + AT_rich Low_complexity Low_complexity 1 24 0 1528 207 3 25 chr4 180902894 180903208 -3385454 + AluJb SINE Alu 1 307 -5 22 56 0 0 chr4 180903246 180903282 -3385380 + AT_rich Low_complexity Low_complexity 1 36 0 656 207 82 24 chr4 180903310 180903613 -3385049 + LTR48 LTR ERV1 409 786 -1 227 219 12 12 chr4 180903730 180903812 -3384850 + A-rich Low_complexity Low_complexity 1 82 0 2128 84 50 3 chr4 180903839 180904136 -3384526 + AluYa5 SINE Alu 1 311 0 1778 216 55 23 chr4 180904144 180904551 -3384111 + L1ME LINE L1 5176 5612 -554 2308 81 3 0 chr4 180904551 180904846 -3383816 + AluY SINE Alu 1 296 -15 1778 216 55 23 chr4 180904846 180905038 -3383624 + L1ME LINE L1 5612 5796 -370 2350 66 20 0 chr4 180905231 180905536 -3383126 - AluY SINE Alu 0 311 1 305 307 25 74 chr4 180906017 180906180 -3382482 + L2 LINE L2 3158 3312 -1 1235 255 110 56 chr4 180906397 180906986 -3381676 + MLT1E2 LTR MaLR 6 626 0 3568 175 4 39 chr4 180907131 180907892 -3380770 - L1MA4 LINE L1 -278 6022 5289 654 199 0 61 chr4 180907892 180907995 -3380667 - AluJo/FRAM SINE Alu -21 291 196 2458 58 7 7 chr4 180907995 180908305 -3380357 + AluY SINE Alu 1 310 -1 654 199 0 61 chr4 180908305 180908332 -3380330 - AluJo/FRAM SINE Alu -116 196 169 1320 169 21 4 chr4 180908332 180908611 -3380051 - L1MA4 LINE L1 -821 5325 5042 1529 95 0 38 chr4 180908631 180908842 -3379820 - AluY SINE Alu -108 203 1 1196 169 22 18 chr4 180908857 180909129 -3379533 - L1MA4 LINE L1 -1098 5048 4776 38 0 0 0 chr4 180909446 180909484 -3379178 + AT_rich Low_complexity Low_complexity 1 38 0 830 222 0 0 chr4 180909600 180909762 -3378900 + AluJb SINE Alu 137 298 -14 34 65 0 0 chr4 180909766 180909828 -3378834 + AT_rich Low_complexity Low_complexity 1 62 0 330 280 57 57 chr4 180910903 180911114 -3377548 - L1MEc LINE L1 -4050 2346 2136 413 268 58 62 chr4 180911312 180911536 -3377126 - HAL1b LINE L1 -433 915 693 252 169 51 0 chr4 180913125 180913184 -3375478 - L1MD1 LINE L1 -21 6221 6160 * 846 222 33 62 chr4 180913180 180913486 -3375176 - L1M4 LINE L1 -818 5328 5032 672 175 58 22 chr4 180913507 180913644 -3375018 - FRAM SINE Alu -25 151 10 521 251 40 15 chr4 180913656 180913855 -3374807 - L1M4 LINE L1 -1109 5037 4834 22 35 0 0 chr4 180913994 180914023 -3374639 + AT_rich Low_complexity Low_complexity 1 29 0 1686 69 0 5 chr4 180914285 180914502 -3374160 - L1PA7 LINE L1 -8 6146 5931 1694 171 0 14 chr4 180914581 180914873 -3373789 - AluJb SINE Alu -24 288 1 5722 168 25 5 chr4 180915116 180916483 -3372179 + L1MA5A LINE L1 4126 5523 -743 495 177 97 26 chr4 180916485 180916598 -3372064 - AluSg/x SINE Alu -23 287 167 4394 120 61 7 chr4 180916598 180917341 -3371321 + L1MA5A LINE L1 5511 6293 -4 2063 153 3 0 chr4 180917471 180917772 -3370890 + AluSx SINE Alu 1 302 -10 25 0 0 0 chr4 180917866 180917891 -3370771 + AT_rich Low_complexity Low_complexity 1 25 0 255 250 191 24 chr4 180917891 180917975 -3370687 - MER5A DNA MER1_type -83 106 9 219 265 128 69 chr4 180918007 180918109 -3370553 + MER5B DNA MER1_type 23 130 -48 551 376 103 19 chr4 180918277 180919210 -3369452 - L2 LINE L2 -186 3086 2069 25 0 0 0 chr4 180919757 180919782 -3368880 + AT_rich Low_complexity Low_complexity 1 25 0 924 156 0 6 chr4 180919978 180920768 -3367894 + (CATTC)n Satellite Satellite 1 784 0 858 156 2 0 chr4 180920849 180921383 -3367279 + (CATTC)n Satellite Satellite 1 535 0 350 160 0 11 chr4 180921424 180921518 -3367144 + (CATTC)n Satellite Satellite 2 94 0 774 174 4 0 chr4 180921600 180922146 -3366516 + (CATTC)n Satellite Satellite 1 548 0 720 172 0 0 chr4 180922159 180922333 -3366329 + (CATTC)n Satellite Satellite 2 175 0 1053 154 0 15 chr4 180922353 180923250 -3365412 + (CATTC)n Satellite Satellite 1 883 0 684 178 0 0 chr4 180923268 180923448 -3365214 + (CATTC)n Satellite Satellite 1 180 0 936 128 0 0 chr4 180923468 180923647 -3365015 + (CATTC)n Satellite Satellite 1 179 0 812 151 6 0 chr4 180923697 180923876 -3364786 + (CATTC)n Satellite Satellite 1 180 0 942 130 0 0 chr4 180923903 180924080 -3364582 + (CATTC)n Satellite Satellite 3 179 0 948 150 0 0 chr4 180924122 180924486 -3364176 + (CATTC)n Satellite Satellite 1 364 0 375 145 0 0 chr4 180924509 180924592 -3364070 + (CATTC)n Satellite Satellite 4 86 0 720 168 0 0 chr4 180924603 180924776 -3363886 + (CATTC)n Satellite Satellite 3 175 0 876 135 0 0 chr4 180924859 180925081 -3363581 + (CATTC)n Satellite Satellite 1 222 0 753 167 0 0 chr4 180925114 180925288 -3363374 + (CATTC)n Satellite Satellite 4 177 0 783 144 0 0 chr4 180925319 180925486 -3363176 + (CATTC)n Satellite Satellite 4 170 0 894 183 2 0 chr4 180925513 180926020 -3362642 + (CATTC)n Satellite Satellite 1 508 0 648 177 0 0 chr4 180926047 180926222 -3362440 + (CATTC)n Satellite Satellite 3 177 0 390 139 0 0 chr4 180926246 180926339 -3362323 + (CATTC)n Satellite Satellite 1 93 0 855 156 0 0 chr4 180926356 180926535 -3362127 + (CATTC)n Satellite Satellite 2 180 0 723 169 0 0 chr4 180926568 180926740 -3361922 + (CATTC)n Satellite Satellite 4 175 0 1056 169 0 0 chr4 180926777 180927479 -3361183 + (CATTC)n Satellite Satellite 1 702 0 570 202 0 0 chr4 180927504 180927677 -3360985 + (CATTC)n Satellite Satellite 1 173 0 799 148 4 14 chr4 180927743 180928038 -3360624 + (CATTC)n Satellite Satellite 1 292 0 939 139 0 0 chr4 180928088 180928268 -3360394 + (CATTC)n Satellite Satellite 1 180 0 897 139 0 0 chr4 180928289 180928462 -3360200 + (CATTC)n Satellite Satellite 2 174 0 474 216 0 0 chr4 180928481 180928652 -3360010 + (CATTC)n Satellite Satellite 4 174 0 1002 155 3 0 chr4 180928663 180929381 -3359281 + (CATTC)n Satellite Satellite 1 720 0 390 121 0 0 chr4 180929418 180929484 -3359178 + (CATTC)n Satellite Satellite 3 68 0 801 202 0 0 chr4 180929497 180930215 -3358447 + (CATTC)n Satellite Satellite 1 718 0 1044 158 3 2 chr4 180930231 180930864 -3357798 + (CATTC)n Satellite Satellite 1 634 0 852 156 0 0 chr4 180930884 180931064 -3357598 + (CATTC)n Satellite Satellite 1 180 0 915 160 0 0 chr4 180931089 180931389 -3357273 + (CATTC)n Satellite Satellite 1 300 0 789 146 0 0 chr4 180931407 180931613 -3357049 + (CATTC)n Satellite Satellite 1 206 0 900 156 3 3 chr4 180931630 180931968 -3356694 + (CATTC)n Satellite Satellite 1 338 0 969 172 2 0 chr4 180932024 180932658 -3356004 + (CATTC)n Satellite Satellite 1 635 0 756 174 7 0 chr4 180932669 180932946 -3355716 + (CATTC)n Satellite Satellite 1 279 0 414 225 0 0 chr4 180932962 180933135 -3355527 + (CATTC)n Satellite Satellite 3 175 0 725 195 5 0 chr4 180933146 180933515 -3355147 + (CATTC)n Satellite Satellite 1 371 0 769 153 6 6 chr4 180933536 180933713 -3354949 + (CATTC)n Satellite Satellite 4 180 0 807 165 0 0 chr4 180933724 180934203 -3354459 + (CATTC)n Satellite Satellite 1 479 0 766 177 0 7 chr4 180934236 180934691 -3353971 + (CATTC)n Satellite Satellite 1 451 0 876 169 0 0 chr4 180934702 180935730 -3352932 + (CATTC)n Satellite Satellite 1 1028 0 858 181 1 1 chr4 180935742 180936540 -3352122 + (CATTC)n Satellite Satellite 1 798 0 645 175 0 0 chr4 180936578 180936749 -3351913 + (CATTC)n Satellite Satellite 4 174 0 387 186 0 0 chr4 180936768 180936870 -3351792 + (CATTC)n Satellite Satellite 4 105 0 1017 157 2 11 chr4 180936914 180937616 -3351046 + (CATTC)n Satellite Satellite 1 695 0 864 157 0 0 chr4 180937630 180937860 -3350802 + (CATTC)n Satellite Satellite 1 230 0 945 169 0 0 chr4 180937925 180938290 -3350372 + (CATTC)n Satellite Satellite 1 365 0 715 142 0 33 chr4 180938338 180938521 -3350141 + (CATTC)n Satellite Satellite 4 180 0 636 191 0 0 chr4 180938537 180938715 -3349947 + (CATTC)n Satellite Satellite 2 179 0 819 178 3 0 chr4 180938731 180939073 -3349589 + (CATTC)n Satellite Satellite 1 343 0 840 185 0 3 chr4 180939087 180940298 -3348364 + (CATTC)n Satellite Satellite 1 1207 0 858 148 0 0 chr4 180940318 180940494 -3348168 + (CATTC)n Satellite Satellite 2 177 0 390 167 0 0 chr4 180940514 180940598 -3348064 + (CATTC)n Satellite Satellite 3 86 0 593 167 0 22 chr4 180940656 180940836 -3347826 + (CATTC)n Satellite Satellite 5 180 0 744 176 0 0 chr4 180940857 180941270 -3347392 + (CATTC)n Satellite Satellite 1 413 0 963 174 0 12 chr4 180941312 180941975 -3346687 + (CATTC)n Satellite Satellite 1 655 0 840 192 0 0 chr4 180941990 180942816 -3345846 + (CATTC)n Satellite Satellite 1 826 0 692 164 6 0 chr4 180942827 180943004 -3345658 + (CATTC)n Satellite Satellite 2 179 0 292 126 44 52 chr4 180942979 180943114 -3345548 + HSATII Satellite Satellite 19 152 -18 * 753 157 0 0 chr4 180943117 180943289 -3345373 + (CATTC)n Satellite Satellite 3 174 0 477 222 0 0 chr4 180943313 180943489 -3345173 + (CATTC)n Satellite Satellite 4 179 0 822 167 0 0 chr4 180943510 180943985 -3344677 + (CATTC)n Satellite Satellite 1 475 0 822 172 0 0 chr4 180944006 180944316 -3344346 + (CATTC)n Satellite Satellite 1 310 0 908 129 6 0 chr4 180944383 180944553 -3344109 + (CATTC)n Satellite Satellite 4 174 0 717 193 0 0 chr4 180944569 180944929 -3343733 + (CATTC)n Satellite Satellite 1 360 0 849 145 0 0 chr4 180944958 180945137 -3343525 + (CATTC)n Satellite Satellite 1 179 0 965 187 1 1 chr4 180945153 180945843 -3342819 + (CATTC)n Satellite Satellite 1 690 0 822 148 0 0 chr4 180945855 180946031 -3342631 + (CATTC)n Satellite Satellite 4 179 0 315 209 0 0 chr4 180946077 180946187 -3342475 + (CATTC)n Satellite Satellite 1 110 0 960 146 3 11 chr4 180946220 180946574 -3342088 + (CATTC)n Satellite Satellite 4 352 0 810 167 3 3 chr4 180946587 180946992 -3341670 + (CATTC)n Satellite Satellite 1 405 0 455 206 7 0 chr4 180947045 180947200 -3341462 + (CATTC)n Satellite Satellite 4 159 0 798 166 0 0 chr4 180947220 180947746 -3340916 + (CATTC)n Satellite Satellite 1 526 0 939 171 4 0 chr4 180947784 180948383 -3340279 + (CATTC)n Satellite Satellite 1 601 0 912 162 0 3 chr4 180948400 180948750 -3339912 + (CATTC)n Satellite Satellite 1 348 0 897 168 0 7 chr4 180948789 180949319 -3339343 + (CATTC)n Satellite Satellite 1 526 0 972 139 0 0 chr4 180949388 180949560 -3339102 + (CATTC)n Satellite Satellite 4 175 0 459 221 0 0 chr4 180949603 180949850 -3338812 + (CATTC)n Satellite Satellite 1 247 0 909 163 2 0 chr4 180949898 180950438 -3338224 + (CATTC)n Satellite Satellite 1 541 0 861 144 0 0 chr4 180950476 180950650 -3338012 + (CATTC)n Satellite Satellite 3 176 0 723 146 0 0 chr4 180950665 180950823 -3337839 + (CATTC)n Satellite Satellite 2 159 0 890 169 3 0 chr4 180950843 180951155 -3337507 + (CATTC)n Satellite Satellite 1 313 0 440 180 8 0 chr4 180951200 180951322 -3337340 + (CATTC)n Satellite Satellite 3 125 0 936 179 0 0 chr4 180951344 180951817 -3336845 + (CATTC)n Satellite Satellite 1 473 0 569 194 6 0 chr4 180951835 180952010 -3336652 + (CATTC)n Satellite Satellite 4 179 0 939 162 3 3 chr4 180952029 180952379 -3336283 + (CATTC)n Satellite Satellite 4 351 0 963 159 1 3 chr4 180952406 180953372 -3335290 + (CATTC)n Satellite Satellite 1 964 0 693 176 0 0 chr4 180953393 180953569 -3335093 + (CATTC)n Satellite Satellite 4 179 0 867 177 0 0 chr4 180953603 180954135 -3334527 + (CATTC)n Satellite Satellite 1 532 0 430 215 6 6 chr4 180954153 180954330 -3334332 + (CATTC)n Satellite Satellite 4 180 0 756 167 0 0 chr4 180954355 180954585 -3334077 + (CATTC)n Satellite Satellite 1 230 0 654 179 0 0 chr4 180954622 180954795 -3333867 + (CATTC)n Satellite Satellite 3 175 0 762 167 0 0 chr4 180954840 180955020 -3333642 + (CATTC)n Satellite Satellite 1 180 0 837 150 0 0 chr4 180955065 180955245 -3333417 + (CATTC)n Satellite Satellite 1 180 0 366 209 0 0 chr4 180955271 180955400 -3333262 + (CATTC)n Satellite Satellite 2 130 0 594 193 0 0 chr4 180955418 180955594 -3333068 + (CATTC)n Satellite Satellite 4 179 0 671 187 0 14 chr4 180955646 180956009 -3332653 + (CATTC)n Satellite Satellite 1 358 0 841 159 3 3 chr4 180956026 180956366 -3332296 + (CATTC)n Satellite Satellite 1 340 0 564 210 0 0 chr4 180956381 180956658 -3332004 + (CATTC)n Satellite Satellite 1 277 0 821 154 0 4 chr4 180956721 180956954 -3331708 + (CATTC)n Satellite Satellite 1 231 0 717 171 0 0 chr4 180956991 180957166 -3331496 + (GAATG)n Satellite Satellite 5 179 0 531 201 0 0 chr4 180957188 180957347 -3331315 + (GAATG)n Satellite Satellite 4 162 0 794 154 0 3 chr4 180957399 180957746 -3330916 + (GAATG)n Satellite Satellite 1 345 0 672 191 0 0 chr4 180957797 180957975 -3330687 + (GAATG)n Satellite Satellite 2 179 0 725 173 4 0 chr4 180958021 180958304 -3330358 + (GAATG)n Satellite Satellite 1 284 0 522 211 0 0 chr4 180958335 180958515 -3330147 + (GAATG)n Satellite Satellite 1 180 0 1005 157 0 8 chr4 180958535 180959331 -3329331 + (GAATG)n Satellite Satellite 4 965 0 999 159 0 1 chr4 180959347 180959971 -3328691 + (GAATG)n Satellite Satellite 1 803 0 827 147 6 0 chr4 180960020 180960197 -3328465 + (GAATG)n Satellite Satellite 2 179 0 632 195 5 0 chr4 180960220 180960615 -3328047 + (GAATG)n Satellite Satellite 1 397 0 901 163 2 2 chr4 180960626 180961201 -3327461 + (GAATG)n Satellite Satellite 1 575 0 765 172 0 0 chr4 180961236 180961416 -3327246 + (GAATG)n Satellite Satellite 1 180 0 804 167 0 0 chr4 180961431 180961743 -3326919 + (GAATG)n Satellite Satellite 1 312 0 807 187 4 4 chr4 180961836 180962104 -3326558 + (GAATG)n Satellite Satellite 1 268 0 538 158 0 53 chr4 180962116 180962306 -3326356 + (GAATG)n Satellite Satellite 1 180 0 933 134 0 0 chr4 180962356 180962528 -3326134 + (GAATG)n Satellite Satellite 4 175 0 708 176 0 0 chr4 180962539 180962785 -3325877 + (GAATG)n Satellite Satellite 1 246 0 1017 118 0 0 chr4 180962822 180963061 -3325601 + (GAATG)n Satellite Satellite 1 239 0 794 172 2 0 chr4 180963143 180963670 -3324992 + (GAATG)n Satellite Satellite 1 528 0 768 183 0 7 chr4 180963705 180964150 -3324512 + (GAATG)n Satellite Satellite 1 441 0 750 172 0 0 chr4 180964184 180964400 -3324262 + (GAATG)n Satellite Satellite 1 216 0 765 168 0 0 chr4 180964434 180964613 -3324049 + (GAATG)n Satellite Satellite 1 179 0 789 185 0 14 chr4 180964649 180965012 -3323650 + (GAATG)n Satellite Satellite 1 358 0 565 159 0 48 chr4 180965033 180965222 -3323440 + (GAATG)n Satellite Satellite 1 180 0 819 188 0 0 chr4 180965236 180965663 -3322999 + (GAATG)n Satellite Satellite 1 427 0 828 173 1 4 chr4 180965687 180966878 -3321784 + (GAATG)n Satellite Satellite 1 1186 0 579 197 0 0 chr4 180966896 180967074 -3321588 + (GAATG)n Satellite Satellite 1 178 0 852 159 0 0 chr4 180967085 180967261 -3321401 + (GAATG)n Satellite Satellite 4 179 0 951 173 0 2 chr4 180967282 180968421 -3320241 + (GAATG)n Satellite Satellite 3 1314 0 321 213 0 0 chr4 180968469 180968577 -3320085 + (GAATG)n Satellite Satellite 3 110 0 725 168 6 0 chr4 180968604 180968783 -3319879 + (GAATG)n Satellite Satellite 1 180 0 435 208 0 0 chr4 180968799 180968929 -3319733 + (GAATG)n Satellite Satellite 5 134 0 738 167 0 0 chr4 180968953 180969133 -3319529 + (GAATG)n Satellite Satellite 1 180 0 828 173 0 0 chr4 180969149 180969765 -3318897 + (GAATG)n Satellite Satellite 1 616 0 594 177 0 0 chr4 180969841 180969999 -3318663 + (GAATG)n Satellite Satellite 3 160 0 794 168 4 18 chr4 180970011 180970558 -3318104 + (GAATG)n Satellite Satellite 1 539 0 911 149 0 10 chr4 180970610 180970907 -3317755 + (GAATG)n Satellite Satellite 1 293 0 495 215 0 0 chr4 180970927 180971104 -3317558 + (GAATG)n Satellite Satellite 4 180 0 858 169 0 0 chr4 180971137 180971842 -3316820 + (GAATG)n Satellite Satellite 1 705 0 843 184 1 0 chr4 180971856 180972622 -3316040 + (GAATG)n Satellite Satellite 1 767 0 993 134 4 4 chr4 180972658 180973006 -3315656 + (GAATG)n Satellite Satellite 1 526 0 447 144 0 0 chr4 180973088 180973185 -3315477 + (GAATG)n Satellite Satellite 4 100 0 201 245 0 0 chr4 180973185 180973238 -3315424 + (AACTG)n Simple_repeat Simple_repeat 1 53 0 965 170 2 1 chr4 180973248 180974126 -3314536 + (GAATG)n Satellite Satellite 1 1058 0 863 170 0 7 chr4 180974147 180974834 -3313828 + (GAATG)n Satellite Satellite 1 682 0 516 209 0 0 chr4 180974852 180975029 -3313633 + (GAATG)n Satellite Satellite 4 180 0 843 152 0 0 chr4 180975048 180975226 -3313436 + (GAATG)n Satellite Satellite 2 179 0 987 155 0 10 chr4 180975262 180975760 -3312902 + (GAATG)n Satellite Satellite 1 492 0 464 169 0 38 chr4 180975778 180975961 -3312701 + (GAATG)n Satellite Satellite 4 179 0 210 216 0 0 chr4 180976039 180976113 -3312549 + (GAATG)n Satellite Satellite 2 75 0 25 0 0 0 chr4 181176249 181176274 -3112388 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr4 181177780 181177804 -3110858 + AT_rich Low_complexity Low_complexity 1 24 0 270 267 58 83 chr4 181178074 181178194 -3110468 - MIR3 SINE MIR -25 183 67 1479 207 3 7 chr4 181182279 181182583 -3106079 + AluSp SINE Alu 1 303 0 243 0 0 0 chr4 181182592 181182619 -3106043 + (CACAA)n Simple_repeat Simple_repeat 4 30 0 1729 144 16 35 chr4 181182821 181183133 -3105529 - AluSg SINE Alu -2 308 3 226 146 0 0 chr4 181183757 181183798 -3104864 + L1MA3 LINE L1 6265 6305 0 818 211 58 0 chr4 181184020 181184176 -3104486 + FRAM SINE Alu 2 166 0 2787 202 24 66 chr4 181184230 181185080 -3103582 - MER4D LTR ERV1 0 903 1 2407 68 0 10 chr4 181187271 181187582 -3101080 - AluY SINE Alu -3 308 1 2175 116 0 0 chr4 181188062 181188364 -3100298 - AluSx SINE Alu -8 304 3 703 272 121 36 chr4 181188923 181189393 -3099269 + MLT1J LTR MaLR 2 511 0 669 91 0 0 chr4 181189752 181189840 -3098822 - AluSc SINE Alu -22 287 200 2701 39 0 0 chr4 181191867 181192172 -3096490 + AluY SINE Alu 1 305 -6 227 275 66 22 chr4 181193937 181194028 -3094634 + MIR SINE MIR 103 197 -65 409 278 127 24 chr4 181195980 181196185 -3092477 - MIR SINE MIR -36 226 1 2151 137 0 3 chr4 181196238 181196551 -3092111 - AluSx SINE Alu 0 312 1 23 55 0 18 chr4 181198728 181198762 -3089900 + AT_rich Low_complexity Low_complexity 1 35 -19 2262 94 0 3 chr4 181198762 181199050 -3089612 + AluSx SINE Alu 1 287 -25 23 55 0 18 chr4 181199050 181199070 -3089592 + AT_rich Low_complexity Low_complexity 35 54 0 296 176 15 0 chr4 181199860 181199928 -3088734 + (TA)n Simple_repeat Simple_repeat 1 69 0 22 0 0 0 chr4 181200197 181200219 -3088443 + AT_rich Low_complexity Low_complexity 1 22 0 252 0 0 0 chr4 181200972 181201000 -3087662 + (A)n Simple_repeat Simple_repeat 1 28 0 2192 99 6 25 chr4 181202612 181202926 -3085736 - AluSg SINE Alu -2 308 1 229 122 0 0 chr4 181203546 181203587 -3085075 + L1MA3 LINE L1 6265 6305 0 26 0 0 0 chr4 181205788 181205814 -3082848 + AT_rich Low_complexity Low_complexity 1 26 0 2519 47 0 3 chr4 181205814 181206111 -3082551 + AluY SINE Alu 1 296 -15 2168 109 0 0 chr4 181206895 181207203 -3081459 - AluSx SINE Alu 0 308 1 730 230 23 58 chr4 181207801 181208058 -3080604 - L1ME3A LINE L1 0 6170 5923 67 0 0 0 chr4 181208058 181208125 -3080537 + AT_rich Low_complexity Low_complexity 1 67 0 2319 61 41 0 chr4 181208220 181208514 -3080148 - AluY SINE Alu -4 307 2 2191 198 33 23 chr4 181208660 181209145 -3079517 - L1MB4 LINE L1 0 6180 5691 1148 267 115 47 chr4 181209835 181210274 -3078388 - MER20B DNA MER1_type -127 656 170 1733 164 48 10 chr4 181210274 181210567 -3078095 - AluJo SINE Alu -8 304 1 1148 267 115 47 chr4 181210567 181210682 -3077980 - MER20B DNA MER1_type -613 170 64 26 0 0 0 chr4 181212202 181212228 -3076434 + AT_rich Low_complexity Low_complexity 1 26 0 2180 92 0 10 chr4 181212383 181212677 -3075985 - AluSg1 SINE Alu -18 291 1 827 281 149 9 chr4 181212678 181212808 -3075854 - HAL1 LINE L1 -1950 557 447 3755 120 11 8 chr4 181212808 181213333 -3075329 - MER1A DNA MER1_type 0 527 1 827 281 149 9 chr4 181213333 181213551 -3075111 - HAL1 LINE L1 -2060 447 160 272 122 0 0 chr4 181213695 181213736 -3074926 - Charlie8 DNA MER1_type -989 1428 1388 200 189 0 0 chr4 181215211 181215248 -3073414 + (CGTG)n Simple_repeat Simple_repeat 4 40 0 2185 50 29 11 chr4 181215915 181216240 -3072422 + AluY SINE Alu 1 311 0 2185 112 0 0 chr4 181216639 181216933 -3071729 + AluSx SINE Alu 2 295 -17 210 204 20 0 chr4 181217753 181217802 -3070860 + A-rich Low_complexity Low_complexity 1 50 0 898 101 22 0 chr4 181217945 181218083 -3070579 + L1PA15 LINE L1 6022 6162 -3 422 314 48 57 chr4 181218083 181218414 -3070248 + L1ME4a LINE L1 5598 5925 -196 247 279 13 0 chr4 181218516 181218595 -3070067 - MER116 DNA Mariner 0 80 1 189 113 19 38 chr4 181218792 181218845 -3069817 + (TA)n Simple_repeat Simple_repeat 1 52 0 1636 131 61 27 chr4 181219909 181220206 -3068456 + AluJo SINE Alu 6 312 0 2648 52 0 0 chr4 181220657 181220967 -3067695 + AluY SINE Alu 1 310 -1 213 360 117 9 chr4 181221187 181221409 -3067253 - L2 LINE L2 -646 2668 2423 1442 176 38 4 chr4 181222063 181222325 -3066337 - L1MB7 LINE L1 -16 6168 5898 3573 163 40 36 chr4 181224221 181224721 -3063941 - L1MB4 LINE L1 0 6180 5675 2323 92 7 0 chr4 181224721 181225025 -3063637 + AluSg SINE Alu 1 306 -4 3573 163 40 36 chr4 181225025 181225247 -3063415 - L1MB4 LINE L1 -505 5675 5455 452 338 42 5 chr4 181225315 181225528 -3063134 + MIR SINE MIR 21 241 -21 25 0 0 0 chr4 181226950 181226975 -3061687 + AT_rich Low_complexity Low_complexity 1 25 0 183 231 39 39 chr4 181229688 181229740 -3058922 - L2 LINE L2 -31 3282 3231 567 146 52 0 chr4 181229799 181229895 -3058767 - Tigger2 DNA MER2_type -54 2664 2564 * 1123 136 61 10 chr4 181229894 181230092 -3058570 - Tigger2 DNA MER2_type -2508 210 3 1955 141 14 0 chr4 181230746 181231036 -3057626 - AluSx SINE Alu -17 295 2 1125 148 13 39 chr4 181231069 181231298 -3057364 + L1MA4A LINE L1 6076 6298 -5 2033 103 55 3 chr4 181231467 181231758 -3056904 - AluSq SINE Alu -7 306 1 317 306 72 0 chr4 181232456 181232567 -3056095 - L2 LINE L2 -21 3251 3133 21 71 0 0 chr4 181232887 181232929 -3055733 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr4 181234489 181234518 -3054144 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr4 181235707 181235736 -3052926 + AT_rich Low_complexity Low_complexity 1 29 0 2293 104 0 13 chr4 181236487 181236796 -3051866 - AluSq SINE Alu -8 305 1 261 0 0 0 chr4 181237943 181237972 -3050690 + (T)n Simple_repeat Simple_repeat 1 29 0 1574 192 3 0 chr4 181239453 181239745 -3048917 - AluSx SINE Alu -18 294 2 212 293 17 0 chr4 181240783 181240841 -3047821 + (CATATA)n Simple_repeat Simple_repeat 6 64 0 427 314 48 57 chr4 181240867 181241198 -3047464 - L1ME4a LINE L1 -196 5925 5598 696 167 22 0 chr4 181241198 181241336 -3047326 - L1PA15 LINE L1 -3 6162 6022 2412 91 0 0 chr4 181242043 181242350 -3046312 - AluSc SINE Alu -2 307 1 203 256 0 0 chr4 181243319 181243362 -3045300 + GA-rich Low_complexity Low_complexity 2 44 0 761 219 8 0 chr4 181244274 181244402 -3044260 - FLAM_A SINE Alu -4 129 1 1602 171 18 74 chr4 181244819 181245034 -3043628 + MLT1A1 LTR MaLR 2 193 -172 1736 156 6 44 chr4 181245034 181245354 -3043308 - AluJo SINE Alu -4 308 1 1602 171 18 74 chr4 181245354 181245477 -3043185 + MLT1A1 LTR MaLR 193 321 -44 1902 170 39 36 chr4 181245972 181246183 -3042479 - MLT1B LTR MaLR 0 390 174 2291 93 3 0 chr4 181246183 181246495 -3042167 - AluY SINE Alu 0 313 1 1902 170 39 36 chr4 181246495 181246670 -3041992 - MLT1B LTR MaLR -216 174 1 789 198 132 20 chr4 181247391 181247588 -3041074 - MER20 DNA MER1_type 0 219 1 2085 122 14 0 chr4 181248106 181248402 -3040260 + AluSx SINE Alu 1 300 -12 409 277 73 59 chr4 181249374 181249594 -3039068 + MIR SINE MIR 20 242 -20 1684 224 26 18 chr4 181249656 181250039 -3038623 - MER58D DNA MER1_type 0 386 1 2353 105 0 0 chr4 181250246 181250552 -3038110 - AluSx SINE Alu -6 306 1 21 36 0 0 chr4 181252561 181252589 -3036073 + AT_rich Low_complexity Low_complexity 1 28 0 235 0 0 54 chr4 181254669 181254706 -3033956 + (TCC)n Simple_repeat Simple_repeat 3 37 0 2247 101 0 0 chr4 181254708 181254996 -3033666 - AluSq SINE Alu -25 288 1 21 36 0 0 chr4 181256661 181256689 -3031973 + AT_rich Low_complexity Low_complexity 1 28 0 1425 180 71 19 chr4 181258636 181258923 -3029739 - AluJb SINE Alu 0 301 1 22 0 0 0 chr4 181260171 181260193 -3028469 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 181261529 181261557 -3027105 + AT_rich Low_complexity Low_complexity 1 28 0 255 247 36 114 chr4 181261757 181261976 -3026686 - L1ME LINE L1 -316 5805 5604 2445 86 0 0 chr4 181262612 181262914 -3025748 - AluSc SINE Alu -7 302 1 241 234 78 39 chr4 181263310 181263387 -3025275 + MIR3 SINE MIR 118 197 -11 2366 95 0 0 chr4 181266415 181266719 -3021943 - AluSx SINE Alu -8 304 1 1212 250 115 26 chr4 181267275 181267743 -3020919 + MLT1J LTR MaLR 2 511 0 2311 80 3 0 chr4 181268102 181268388 -3020274 - AluSg1 SINE Alu -22 287 1 25 31 0 0 chr4 181269842 181269874 -3018788 + AT_rich Low_complexity Low_complexity 1 32 0 2036 138 3 3 chr4 181271365 181271663 -3016999 - AluSq SINE Alu -15 298 1 2042 112 0 0 chr4 181271668 181271945 -3016717 - AluSx SINE Alu -15 297 21 301 265 44 1 chr4 181272239 181272376 -3016286 + MIR SINE MIR 110 262 0 22 0 0 0 chr4 181273965 181273987 -3014675 + AT_rich Low_complexity Low_complexity 1 22 0 253 215 38 0 chr4 181274519 181274598 -3014064 + (TA)n Simple_repeat Simple_repeat 1 82 0 2160 112 6 6 chr4 181275643 181275955 -3012707 - AluSx SINE Alu 0 312 1 2326 96 3 0 chr4 181276533 181276834 -3011828 + AluSg SINE Alu 1 302 -8 231 61 0 0 chr4 181277314 181277347 -3011315 + (T)n Simple_repeat Simple_repeat 1 33 0 473 70 0 0 chr4 181277363 181277420 -3011242 - Alu SINE Alu -260 58 2 2019 126 10 0 chr4 181278173 181278466 -3010196 - AluSx SINE Alu -16 296 1 243 0 0 0 chr4 181279201 181279228 -3009434 + (CATTC)n Simple_repeat Simple_repeat 4 30 0 27 29 0 0 chr4 181279994 181280028 -3008634 + AT_rich Low_complexity Low_complexity 1 34 0 1542 190 26 35 chr4 181280175 181280522 -3008140 + MLT1A1 LTR MaLR 17 360 -5 1054 248 22 22 chr4 181280525 181280836 -3007826 + L1MCc LINE L1 81 391 -6032 622 233 7 7 chr4 181280842 181280992 -3007670 + L1MCc LINE L1 2920 3069 -4053 23 0 0 0 chr4 181281059 181281082 -3007580 + AT_rich Low_complexity Low_complexity 1 23 0 480 316 91 63 chr4 181281192 181281646 -3007016 + L2 LINE L2 2800 3265 -48 1730 156 7 29 chr4 181282316 181282648 -3006014 + AluJo SINE Alu 1 325 0 323 298 7 64 chr4 181283685 181283839 -3004823 + MER5A DNA MER1_type 6 162 -27 276 352 29 0 chr4 181284161 181284266 -3004396 + MER5B DNA MER1_type 68 175 -3 303 364 91 6 chr4 181284288 181284453 -3004209 - MIR SINE MIR -64 198 20 1802 179 42 18 chr4 181285139 181285469 -3003193 + Tigger7 DNA MER2_type 1 338 -212 806 162 28 0 chr4 181285471 181285521 -3003141 + Tigger7 DNA MER2_type 2341 2388 -99 414 0 0 0 chr4 181285521 181285567 -3003095 + (CA)n Simple_repeat Simple_repeat 2 47 0 806 162 28 0 chr4 181285567 181285658 -3003004 + Tigger7 DNA MER2_type 2388 2486 -1 2070 101 16 36 chr4 181286368 181286674 -3001988 + AluSx SINE Alu 1 300 -12 212 318 129 0 chr4 181286835 181286920 -3001742 - L2 LINE L2 -40 3232 3137 476 294 70 23 chr4 181287541 181287755 -3000907 + MIR SINE MIR 14 237 -25 21 71 0 0 chr4 181290046 181290088 -2998574 + GC_rich Low_complexity Low_complexity 1 42 0 26 64 0 0 chr4 181290200 181290247 -2998415 + GC_rich Low_complexity Low_complexity 1 47 0 717 149 0 9 chr4 181290481 181290595 -2998067 - FLAM_C SINE Alu 0 143 31 314 137 0 0 chr4 181291365 181291416 -2997246 - Alu SINE Alu -2 299 249 2639 39 0 10 chr4 181291661 181291972 -2996690 - AluY SINE Alu -3 308 1 211 331 148 43 chr4 181292130 181292523 -2996139 - L2 LINE L2 -337 2977 2544 613 234 145 47 chr4 181292770 181293005 -2995657 + MIR SINE MIR 5 262 0 193 237 203 0 chr4 181293009 181293068 -2995594 - L2 LINE L2 -1017 2297 2227 963 260 112 17 chr4 181293097 181293393 -2995269 + MLT1G LTR MaLR 9 332 -258 1857 184 38 27 chr4 181293419 181293784 -2994878 - MLT1A2 LTR MaLR 0 374 6 814 237 29 10 chr4 181293799 181293990 -2994672 + MLT1G LTR MaLR 395 541 -1 375 312 143 48 chr4 181293992 181294453 -2994209 - L2 LINE L2 -1122 2192 1688 187 182 0 36 chr4 181295009 181295064 -2993598 + CT-rich Low_complexity Low_complexity 4 56 0 193 306 24 35 chr4 181295118 181295203 -2993459 - MER5A DNA MER1_type -11 178 95 189 0 0 0 chr4 181296393 181296414 -2992248 + (TG)n Simple_repeat Simple_repeat 1 21 0 * 192 40 0 0 chr4 181296413 181296438 -2992224 + (GA)n Simple_repeat Simple_repeat 1 25 0 207 69 0 0 chr4 181296510 181296539 -2992123 + (GA)n Simple_repeat Simple_repeat 1 29 0 228 35 0 0 chr4 181296599 181296628 -2992034 + (TG)n Simple_repeat Simple_repeat 1 29 0 * 291 28 0 0 chr4 181296627 181296663 -2991999 + (GA)n Simple_repeat Simple_repeat 1 36 0 192 256 0 0 chr4 181296844 181296887 -2991775 - L2 LINE L2 -26 3246 3204 2164 114 6 29 chr4 181298139 181298454 -2990208 + AluSg SINE Alu 1 308 -2 282 315 140 39 chr4 181298618 181299082 -2989580 + L2 LINE L2 2006 2516 -798 600 183 140 55 chr4 181299152 181299316 -2989346 - MSTD LTR MaLR -134 262 85 195 378 53 22 chr4 181299390 181299615 -2989047 + L2 LINE L2 2625 2856 -458 213 108 0 0 chr4 181299717 181299754 -2988908 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 267 214 0 18 chr4 181299802 181299858 -2988804 - L2 LINE L2 -94 3219 3165 453 279 178 19 chr4 181300405 181300698 -2987964 - L2 LINE L2 -207 3106 2771 3773 179 9 20 chr4 181300737 181301426 -2987236 + L1MB5 LINE L1 5476 6156 -18 694 262 0 6 chr4 181301426 181301594 -2987068 - MLT1B LTR MaLR -6 384 218 1655 208 102 14 chr4 181303427 181303788 -2984874 + MSTD LTR MaLR 4 396 0 1955 210 99 2 chr4 181303841 181304255 -2984407 + MLT2B1 LTR ERVL 1 454 -66 203 88 29 0 chr4 181304256 181304290 -2984372 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 2494 130 71 2 chr4 181304290 181304683 -2983979 - MSTA LTR MaLR -1 427 8 519 26 39 0 chr4 181304686 181304763 -2983899 + (TCTA)n Simple_repeat Simple_repeat 3 82 0 883 169 0 0 chr4 181305970 181306118 -2982544 + MLT2B3 LTR ERVL 1 148 -406 800 180 12 13 chr4 181306133 181306302 -2982360 + MLT2A2 LTR ERVL 307 445 -8 473 342 32 11 chr4 181307386 181307600 -2981062 + MIR SINE MIR 26 246 -16 218 309 0 0 chr4 181307635 181307690 -2980972 + L2 LINE L2 3209 3263 -9 869 253 17 30 chr4 181307702 181307939 -2980723 - MIR SINE MIR -10 252 19 222 118 0 0 chr4 181308281 181308315 -2980347 + (CCA)n Simple_repeat Simple_repeat 1 34 0 308 302 21 0 chr4 181308361 181308457 -2980205 - MIR SINE MIR -88 174 77 571 92 11 11 chr4 181309736 181309823 -2978839 + MSTB LTR MaLR 1 87 -339 5839 154 14 12 chr4 181309867 181310232 -2978430 - L1PB1 LINE L1 0 6867 6504 297 0 0 0 chr4 181310232 181310265 -2978397 + (TA)n Simple_repeat Simple_repeat 1 33 0 5839 154 14 12 chr4 181310265 181311639 -2977023 - L1PB1 LINE L1 -363 6504 5129 * 10544 138 105 14 chr4 181311627 181311682 -2976980 - L1PB1 LINE L1 -3167 3695 3646 2063 115 3 39 chr4 181311682 181311987 -2976675 - AluSg SINE Alu -16 294 1 10544 138 105 14 chr4 181311987 181314616 -2974046 - L1PB1 LINE L1 -3216 3646 768 2133 150 23 20 chr4 181314616 181314970 -2973692 + MSTB LTR MaLR 72 426 0 1825 162 30 7 chr4 181316827 181317123 -2971539 + AluJb SINE Alu 1 303 -9 3613 163 21 62 chr4 181317177 181318026 -2970636 - MER4D LTR ERV1 0 903 1 2363 205 33 98 chr4 181318393 181318995 -2969667 - L1ME1 LINE L1 -6 6160 5613 2053 128 17 0 chr4 181318995 181319285 -2969377 - AluSx SINE Alu -17 295 1 2363 205 33 98 chr4 181319285 181319415 -2969247 - L1ME1 LINE L1 -553 5613 5476 210 256 73 24 chr4 181320709 181320791 -2967871 + MIR SINE MIR 107 192 -70 197 0 71 0 chr4 181321411 181321439 -2967223 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 24 32 0 0 chr4 181322439 181322470 -2966192 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr4 181322776 181322804 -2965858 + AT_rich Low_complexity Low_complexity 1 28 0 2334 106 0 0 chr4 181323371 181323673 -2964989 - AluSx SINE Alu -10 302 1 1917 143 7 7 chr4 181324606 181324899 -2963763 - AluJb SINE Alu -19 293 1 23 0 0 0 chr4 181327764 181327787 -2960875 + AT_rich Low_complexity Low_complexity 1 23 0 503 305 40 0 chr4 181328419 181328596 -2960066 + MIR SINE MIR 50 233 -29 237 65 0 0 chr4 181330084 181330115 -2958547 + (TGG)n Simple_repeat Simple_repeat 2 32 0 2582 205 25 35 chr4 181333991 181334017 -2954645 - L1MC2 LINE L1 -1 6343 6318 1773 152 0 30 chr4 181334017 181334314 -2954348 - AluJo SINE Alu -22 290 3 2582 205 25 35 chr4 181334314 181334979 -2953683 - L1MC2 LINE L1 -26 6318 5659 1820 158 14 0 chr4 181335269 181335548 -2953114 + AluJo SINE Alu 1 283 -29 267 272 35 35 chr4 181335816 181335930 -2952732 - MIR SINE MIR -29 233 120 2053 127 3 3 chr4 181336359 181336658 -2952004 - AluSc SINE Alu -10 299 1 350 244 92 0 chr4 181336781 181336900 -2951762 + MIR SINE MIR 65 194 -68 24 53 0 0 chr4 181336990 181337028 -2951634 + AT_rich Low_complexity Low_complexity 1 38 0 1895 147 3 0 chr4 181338279 181338617 -2950045 + AluSq SINE Alu 1 339 0 293 368 31 25 chr4 181340487 181340650 -2948012 + MIR3 SINE MIR 20 183 -25 24 0 0 0 chr4 181340920 181340944 -2947718 + AT_rich Low_complexity Low_complexity 1 24 0 302 213 38 25 chr4 181341518 181341598 -2947064 + MER117 DNA MER1_type 2 82 -115 2130 124 0 13 chr4 181342633 181342957 -2945705 - AluSx SINE Alu 0 312 1 2363 87 0 3 chr4 181343447 181343745 -2944917 - AluSc SINE Alu -12 297 1 1941 183 9 0 chr4 181343924 181344269 -2944393 + MER7A DNA MER2_type 1 346 0 192 286 131 0 chr4 181344340 181344424 -2944238 + MIR SINE MIR 40 134 -128 180 242 97 16 chr4 181345316 181345378 -2943284 + MIR SINE MIR 57 123 -85 22 35 0 0 chr4 181347408 181347437 -2941225 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr4 181349196 181349223 -2939439 + AT_rich Low_complexity Low_complexity 1 27 0 586 299 149 30 chr4 181349814 181350425 -2938237 - L2 LINE L2 -17 3255 2566 614 293 78 4 chr4 181351314 181351546 -2937116 + MIR SINE MIR 4 252 -10 365 266 119 0 chr4 181351779 181351888 -2936774 + L2 LINE L2 3151 3272 0 306 287 0 0 chr4 181353144 181353259 -2935403 + (TA)n Simple_repeat Simple_repeat 2 116 0 778 121 0 30 chr4 181354209 181354341 -2934321 - FRAM SINE Alu -9 167 40 282 298 27 75 chr4 181354450 181354638 -2934024 + MIR SINE MIR 30 208 -54 687 176 0 84 chr4 181354929 181355035 -2933627 - AluSq/x SINE Alu -180 132 39 977 424 57 18 chr4 181355035 181355316 -2933346 + AluSg SINE Alu 1 292 -8 687 176 0 84 chr4 181355316 181355351 -2933311 - AluSq/x SINE Alu -273 39 3 21 57 0 0 chr4 181355435 181355470 -2933192 + AT_rich Low_complexity Low_complexity 1 35 0 568 297 81 34 chr4 181355470 181355706 -2932956 + MIR SINE MIR 12 258 -4 22 88 0 0 chr4 181356628 181356685 -2931977 + AT_rich Low_complexity Low_complexity 1 57 0 871 162 12 58 chr4 181358774 181358947 -2929715 - FRAM SINE Alu -4 172 8 643 288 21 65 chr4 181360257 181360481 -2928181 + MIR SINE MIR 23 249 -13 180 0 0 0 chr4 181363956 181363976 -2924686 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 196 316 35 70 chr4 181364647 181364818 -2923844 - MIR SINE MIR -12 250 86 2282 84 3 7 chr4 181365783 181366082 -2922580 + AluSx SINE Alu 1 298 -14 237 289 0 119 chr4 181366366 181366525 -2922137 - L3 LINE CR1 -75 1502 1363 1969 83 32 86 chr4 181368317 181368630 -2920032 - AluSc SINE Alu -13 296 1 2411 65 0 16 chr4 181369037 181369345 -2919317 - AluY SINE Alu -8 303 1 302 294 0 0 chr4 181420346 181420414 -2868248 + (CGAGA)n Simple_repeat Simple_repeat 1 68 0 817 180 78 34 chr4 181420894 181421100 -2867562 + MER20 DNA MER1_type 2 216 -3 2264 49 0 7 chr4 181421267 181421577 -2867085 - AluY SINE Alu 0 308 1 751 273 85 75 chr4 181422413 181422882 -2865780 - MLT1J LTR MaLR -35 476 3 523 248 88 0 chr4 181423172 181423309 -2865353 + MIR SINE MIR 49 197 -65 313 276 77 77 chr4 181424040 181424196 -2864466 + L2 LINE L2 3158 3313 0 180 154 77 77 chr4 181424487 181424565 -2864097 - L2 LINE L2 -189 3083 3006 2196 104 0 0 chr4 181424703 181425011 -2863651 - AluSx SINE Alu -4 308 1 3332 75 39 5 chr4 181425383 181425821 -2862841 - MLT2A2 LTR ERVL 0 453 1 2016 177 30 13 chr4 181426199 181426657 -2862005 - MLT2B1 LTR ERVL -1 514 1 1758 199 62 28 chr4 181430737 181431173 -2857489 - MLT1C LTR MaLR 0 467 17 220 197 0 49 chr4 181436069 181436130 -2852532 + (CAACT)n Simple_repeat Simple_repeat 1 58 0 328 205 0 60 chr4 181436138 181436323 -2852339 + (CAGCC)n Simple_repeat Simple_repeat 1 174 0 360 260 0 61 chr4 181436350 181436531 -2852131 + (CAGCC)n Simple_repeat Simple_repeat 5 174 0 651 96 0 19 chr4 181436870 181436974 -2851688 - AluSg/x SINE Alu 0 312 211 197 220 60 0 chr4 181437077 181437127 -2851535 + L2 LINE L2 3216 3268 -4 255 311 27 0 chr4 181437187 181437261 -2851401 - MIR3 SINE MIR -49 159 84 202 225 42 99 chr4 181437328 181437399 -2851263 + MIR SINE MIR 18 84 -178 2518 136 22 58 chr4 181437406 181437854 -2850808 + MSTB1 LTR MaLR 1 432 0 2259 93 3 7 chr4 181437908 181438209 -2850453 + AluSc SINE Alu 1 300 -9 265 271 194 26 chr4 181439857 181440012 -2848650 - L3 LINE CR1 -784 793 613 2096 136 0 0 chr4 181440390 181440692 -2847970 + AluSx SINE Alu 1 302 -10 2054 89 3 63 chr4 181441441 181441782 -2846880 - AluSx SINE Alu 0 312 1 24 32 0 0 chr4 181442038 181442069 -2846593 + AT_rich Low_complexity Low_complexity 1 31 0 818 91 8 0 chr4 181443204 181443325 -2845337 + (ATG)n Simple_repeat Simple_repeat 3 124 0 352 322 38 19 chr4 181443414 181443569 -2845093 - MIR SINE MIR -61 147 34 181 281 34 56 chr4 181443553 181443642 -2845020 + L2 LINE L2 3182 3268 -4 * 327 268 104 24 chr4 181444912 181445076 -2843586 + MIR SINE MIR 86 262 0 2061 169 48 24 chr4 181445822 181446278 -2842384 + MLT1C LTR MaLR 1 467 0 221 230 54 27 chr4 181446288 181446362 -2842300 - MIR SINE MIR -119 143 68 3032 94 84 2 chr4 181447021 181447447 -2841215 - MER4C LTR ERV1 0 465 5 290 261 92 15 chr4 181447462 181447592 -2841070 + MER103 DNA DNA 15 154 -12 616 251 79 0 chr4 181448122 181448337 -2840325 + HsTC2 DNA Tc2 1599 1830 -68 226 297 41 47 chr4 181449314 181449475 -2839187 - MIR3 SINE MIR -36 172 13 2034 100 29 4 chr4 181451560 181451840 -2836822 - AluSg SINE Alu -20 290 4 1063 188 10 0 chr4 181452222 181452419 -2836243 - MLT1B LTR MaLR 0 390 192 374 157 57 0 chr4 181452460 181452542 -2836120 - AluJ/FRAM SINE Alu -1 301 230 902 137 23 46 chr4 181452550 181452725 -2835937 - MLT1B LTR MaLR -219 171 1 2228 113 0 3 chr4 181452943 181453254 -2835408 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr4 181453886 181453908 -2834754 + AT_rich Low_complexity Low_complexity 1 22 0 411 233 0 0 chr4 181455419 181455522 -2833140 + GA-rich Low_complexity Low_complexity 3 105 0 244 228 0 35 chr4 181455526 181455583 -2833079 + G-rich Low_complexity Low_complexity 5 59 0 706 157 22 22 chr4 181455585 181455823 -2832839 + GA-rich Low_complexity Low_complexity 1 238 0 23 68 0 0 chr4 181456367 181456411 -2832251 + AT_rich Low_complexity Low_complexity 1 44 0 260 270 126 27 chr4 181457011 181457122 -2831540 + L2 LINE L2 3191 3312 -1 278 193 319 0 chr4 181457144 181457263 -2831399 - MIR SINE MIR -86 176 20 28 29 0 0 chr4 181457796 181457831 -2830831 + AT_rich Low_complexity Low_complexity 1 35 0 1879 78 156 0 chr4 181457897 181458153 -2830509 + AluSx SINE Alu 1 296 -6 1440 235 85 22 chr4 181459084 181459544 -2829118 + MLT1J LTR MaLR 3 491 -20 198 167 0 0 chr4 181459818 181459854 -2828808 + CT-rich Low_complexity Low_complexity 1 36 0 287 292 7 90 chr4 181460087 181460280 -2828382 + MIR SINE MIR 11 184 -74 2130 106 48 0 chr4 181460345 181460638 -2828024 - AluSx SINE Alu -5 307 1 242 164 66 16 chr4 181462308 181462369 -2826293 + L2 LINE L2 3209 3272 0 183 42 0 0 chr4 181462402 181462426 -2826236 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 237 273 100 36 chr4 181464170 181464280 -2824382 + L2 LINE L2 3133 3249 -23 255 256 183 29 chr4 181464746 181464883 -2823779 + MIR SINE MIR 105 262 0 24 53 0 0 chr4 181464962 181465000 -2823662 + AT_rich Low_complexity Low_complexity 1 38 0 197 336 67 34 chr4 181465280 181465399 -2823263 - L2 LINE L2 -17 3255 3133 214 292 157 11 chr4 181465600 181465689 -2822973 + L2 LINE L2 3204 3305 -8 29 0 0 0 chr4 181465882 181465911 -2822751 + AT_rich Low_complexity Low_complexity 1 29 0 189 303 50 20 chr4 181468099 181468198 -2820464 + L2 LINE L2 3161 3262 -10 433 231 54 15 chr4 181468244 181468374 -2820288 + MIR SINE MIR 125 259 -3 1890 70 0 0 chr4 181469213 181469442 -2819220 - AluY SINE Alu -9 302 74 189 0 26 77 chr4 181471966 181471980 -2816682 + (TTCA)n Simple_repeat Simple_repeat 3 16 -23 2301 103 0 13 chr4 181471980 181472292 -2816370 - AluSx SINE Alu -4 308 1 189 0 26 77 chr4 181472292 181472316 -2816346 + (TTCA)n Simple_repeat Simple_repeat 16 39 0 1816 83 0 29 chr4 181473010 181473252 -2815410 + AluSc SINE Alu 72 306 -3 312 271 73 0 chr4 181473290 181473386 -2815276 + L2 LINE L2 3206 3308 -5 521 301 15 10 chr4 181474470 181474666 -2813996 - L1ME3A LINE L1 -300 5870 5674 530 291 73 24 chr4 181474786 181474992 -2813670 - MIR SINE MIR -26 236 21 2801 74 40 0 chr4 181475283 181475633 -2813029 - THE1B LTR MaLR 0 364 1 1955 97 65 7 chr4 181476695 181476973 -2811689 - AluSg SINE Alu -16 294 1 180 0 0 0 chr4 181476978 181476998 -2811664 + (T)n Simple_repeat Simple_repeat 1 20 0 512 108 194 0 chr4 181477548 181477641 -2811021 - HY1 scRNA scRNA -1 111 1 298 146 18 18 chr4 181477684 181477739 -2810923 + MIR SINE MIR 94 148 -60 1513 186 0 64 chr4 181478636 181478964 -2809698 - AluJo SINE Alu -5 307 1 1805 199 123 84 chr4 181479696 181480537 -2808125 + LTR28 LTR ERV1 1 1019 -1 431 283 194 25 chr4 181480547 181481136 -2807526 + L2 LINE L2 2526 3223 -90 2440 95 31 11 chr4 181482214 181482571 -2806091 - THE1B LTR MaLR 0 364 1 39 38 0 0 chr4 181483100 181483153 -2805509 + AT_rich Low_complexity Low_complexity 1 53 0 476 329 23 28 chr4 181483892 181484108 -2804554 + MIR SINE MIR 14 228 -34 644 325 8 41 chr4 181485455 181485632 -2803030 + MIR SINE MIR 28 196 -66 1927 125 49 0 chr4 181485632 181485920 -2802742 + AluSx SINE Alu 1 302 -10 644 325 8 41 chr4 181485920 181485985 -2802677 + MIR SINE MIR 196 262 0 213 341 24 12 chr4 181486395 181486480 -2802182 + MIR SINE MIR 59 144 -118 22 0 0 0 chr4 181486943 181486965 -2801697 + AT_rich Low_complexity Low_complexity 1 22 0 574 242 8 0 chr4 181487041 181487173 -2801489 + FLAM_A SINE Alu 10 142 0 21 36 0 0 chr4 181488908 181488936 -2799726 + AT_rich Low_complexity Low_complexity 1 28 0 3314 206 52 35 chr4 181489248 181490354 -2798308 - L1ME1 LINE L1 -5 6161 5023 * 3561 202 21 38 chr4 181490352 181490487 -2798175 - L1MB5 LINE L1 0 6174 6038 1732 156 3 23 chr4 181490487 181490788 -2797874 + AluJo SINE Alu 1 295 -17 3561 202 21 38 chr4 181490788 181491552 -2797110 - L1MB5 LINE L1 -136 6038 5290 2347 195 78 81 chr4 181491552 181492526 -2796136 - L1ME1 LINE L1 -1110 5036 4066 245 340 156 14 chr4 181492568 181492856 -2795806 + L2 LINE L2 2013 2341 -973 2098 122 10 3 chr4 181492856 181493151 -2795511 - AluSc SINE Alu -12 297 1 23 0 0 0 chr4 181493151 181493174 -2795488 + AT_rich Low_complexity Low_complexity 1 23 0 809 319 104 36 chr4 181493359 181493860 -2794802 + L2 LINE L2 2779 3313 0 283 236 0 14 chr4 181493925 181493997 -2794665 - LTR33A LTR ERVL -9 514 444 253 294 232 11 chr4 181494895 181495072 -2793590 + L2 LINE L2 3057 3272 0 199 286 29 29 chr4 181498881 181498951 -2789711 - MIR SINE MIR -76 132 63 572 299 84 0 chr4 181499107 181499321 -2789341 + MIR SINE MIR 31 262 0 35 83 0 0 chr4 181499753 181499837 -2788825 + AT_rich Low_complexity Low_complexity 1 84 0 189 0 0 0 chr4 181500132 181500153 -2788509 + (A)n Simple_repeat Simple_repeat 1 21 0 2205 139 88 8 chr4 181500525 181500921 -2787741 - MSTA LTR MaLR 0 428 1 21 36 0 0 chr4 181501136 181501164 -2787498 + AT_rich Low_complexity Low_complexity 1 28 0 709 107 66 0 chr4 181501439 181501560 -2787102 + MSTA LTR MaLR 3 131 -297 657 131 47 0 chr4 181501558 181501665 -2786997 + MSTA LTR MaLR 254 365 -63 * 187 229 0 0 chr4 181501876 181501911 -2786751 - L2 LINE L2 -102 3170 3136 229 209 81 47 chr4 181502108 181502194 -2786468 - MIR SINE MIR -77 185 97 480 286 36 0 chr4 181503802 181503942 -2784720 - MIR SINE MIR 0 262 118 312 306 41 25 chr4 181504070 181504191 -2784471 + L2 LINE L2 3143 3265 -7 190 255 20 0 chr4 181504215 181504266 -2784396 + MIR SINE MIR 68 119 -143 31 0 0 0 chr4 181505786 181505817 -2782845 + AT_rich Low_complexity Low_complexity 1 31 0 208 245 0 0 chr4 181506272 181506321 -2782341 + CT-rich Low_complexity Low_complexity 4 52 0 245 193 0 35 chr4 181506462 181506519 -2782143 + L3 LINE CR1 838 892 -685 310 333 0 21 chr4 181506798 181506891 -2781771 + L3 LINE CR1 1272 1362 -215 188 369 0 0 chr4 181506979 181507044 -2781618 + L3 LINE CR1 1512 1576 -1 219 69 0 0 chr4 181507317 181507346 -2781316 + (ATG)n Simple_repeat Simple_repeat 2 30 0 1161 87 9 9 chr4 181507764 181508002 -2780660 + (ATG)n Simple_repeat Simple_repeat 1 238 0 4304 97 6 35 chr4 181508374 181509031 -2779631 + L1PA15 LINE L1 5522 6159 -6 825 280 108 5 chr4 181509158 181509530 -2779132 - MLT1J2 LTR MaLR -18 432 23 23 0 0 0 chr4 181511264 181511287 -2777375 + AT_rich Low_complexity Low_complexity 1 23 0 722 264 140 16 chr4 181512781 181513096 -2775566 + L2 LINE L2 1863 2216 -1098 272 336 28 21 chr4 181513100 181513243 -2775419 + L2 LINE L2 2544 2687 -627 * 576 305 153 35 chr4 181513241 181513667 -2774995 + L2 LINE L2 2836 3311 -2 2198 108 0 3 chr4 181514832 181515119 -2773543 + AluSq SINE Alu 9 294 -19 278 354 177 21 chr4 181516528 181517184 -2771478 - L2 LINE L2 -599 2715 1958 27 0 0 0 chr4 181517315 181517342 -2771320 + AT_rich Low_complexity Low_complexity 1 27 0 2371 161 27 66 chr4 181517362 181517451 -2771211 + MER34 LTR ERV1 1 92 -450 2492 78 7 0 chr4 181517451 181517760 -2770902 + AluSx SINE Alu 1 311 -1 2371 161 27 66 chr4 181517760 181518234 -2770428 + MER34 LTR ERV1 92 542 0 364 277 58 22 chr4 181519478 181519615 -2769047 - L1M4 LINE L1 -2111 4035 3894 2634 35 0 6 chr4 181521761 181522074 -2766588 + AluY SINE Alu 1 311 0 2103 128 3 25 chr4 181522954 181523273 -2765389 + AluSx SINE Alu 1 312 0 714 201 52 17 chr4 181523501 181523675 -2764987 + L1MC3 LINE L1 6714 6893 -892 3016 145 15 64 chr4 181523678 181524043 -2764619 - Tigger4(Zombi) DNA MER2_type -30 2701 2381 2242 93 10 0 chr4 181524043 181524334 -2764328 - AluSp SINE Alu -19 294 1 3016 145 15 64 chr4 181524334 181524625 -2764037 - Tigger4(Zombi) DNA MER2_type -350 2381 2077 1063 70 0 0 chr4 181524626 181524754 -2763908 - AluSg/x SINE Alu -15 297 170 1116 140 29 0 chr4 181524754 181524961 -2763701 - Tigger4(Zombi) DNA MER2_type -649 2082 1870 519 169 0 0 chr4 181524955 181525044 -2763618 - Tigger4(Zombi) DNA MER2_type -2637 94 6 * 21 0 0 0 chr4 181525472 181525493 -2763169 + AT_rich Low_complexity Low_complexity 1 21 0 2166 119 0 31 chr4 181525515 181525835 -2762827 - AluSq SINE Alu -3 310 1 229 282 0 0 chr4 181528489 181528560 -2760102 + T-rich Low_complexity Low_complexity 1 71 0 389 173 113 107 chr4 181530655 181530805 -2757857 - L2 LINE L2 0 3313 3163 2103 97 3 7 chr4 181531173 181531462 -2757200 + AluSc SINE Alu 10 297 -12 22 0 0 0 chr4 181531690 181531712 -2756950 + AT_rich Low_complexity Low_complexity 1 22 0 229 330 147 28 chr4 181532083 181532192 -2756470 + MIR SINE MIR 134 255 -7 538 187 56 126 chr4 181532223 181532341 -2756321 + MER33 DNA MER1_type 5 105 -2480 728 207 0 21 chr4 181532341 181532486 -2756176 + L1PB4 LINE L1 6013 6154 -2 538 187 56 126 chr4 181532486 181532565 -2756097 + MER33 DNA MER1_type 105 188 -136 * 950 161 36 5 chr4 181532553 181532745 -2755917 + MER33 DNA MER1_type 125 322 -2 723 188 146 0 chr4 181532754 181532919 -2755743 - MER5A DNA MER1_type 0 189 1 462 218 10 10 chr4 181532930 181533031 -2755631 + MER5A DNA MER1_type 4 104 -85 209 256 165 38 chr4 181533101 181533234 -2755428 + MER5B DNA MER1_type 2 151 -27 654 265 96 13 chr4 181533722 181533952 -2754710 + MIR SINE MIR 9 257 -5 2459 94 3 0 chr4 181534552 181534859 -2753803 - AluSp SINE Alu -5 308 1 2339 107 3 0 chr4 181535473 181535781 -2752881 - AluSx SINE Alu -3 309 1 243 168 15 117 chr4 181536049 181536246 -2752416 + CT-rich Low_complexity Low_complexity 3 179 0 190 229 21 0 chr4 181536589 181536637 -2752025 + L2 LINE L2 3265 3313 0 2559 7 0 3 chr4 181537762 181538044 -2750618 - AluYa5 SINE Alu -30 281 1 23 33 0 0 chr4 181538364 181538394 -2750268 + AT_rich Low_complexity Low_complexity 1 30 0 203 175 0 0 chr4 181538539 181538579 -2750083 + T-rich Low_complexity Low_complexity 1 40 0 243 0 0 0 chr4 181540742 181540769 -2747893 + (A)n Simple_repeat Simple_repeat 1 27 0 219 146 0 0 chr4 181542810 181542851 -2745811 + (TG)n Simple_repeat Simple_repeat 2 42 0 415 181 21 125 chr4 181545475 181545544 -2743118 - HAL1 LINE L1 -856 1651 1576 1616 121 28 57 chr4 181545544 181545826 -2742836 + AluJb SINE Alu 9 282 -30 415 181 21 125 chr4 181545826 181545840 -2742822 - HAL1 LINE L1 -931 1576 1562 243 0 0 0 chr4 181545840 181545867 -2742795 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 415 181 21 125 chr4 181545867 181545926 -2742736 - HAL1 LINE L1 -945 1562 1523 478 301 24 9 chr4 181546393 181546606 -2742056 - L1ME LINE L1 -670 5496 5281 37 39 0 0 chr4 181546624 181546675 -2741987 + AT_rich Low_complexity Low_complexity 1 51 0 213 254 18 0 chr4 181546894 181546949 -2741713 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 228 217 33 33 chr4 181546965 181547057 -2741605 + (TCTA)n Simple_repeat Simple_repeat 4 95 0 277 211 55 37 chr4 181547069 181547178 -2741484 + L1MC4 LINE L1 7932 8042 0 2242 96 0 0 chr4 181549471 181549774 -2738888 - AluY SINE Alu 0 304 2 2384 71 3 0 chr4 181550865 181551160 -2737502 - AluY SINE Alu -15 296 1 416 328 100 13 chr4 181552250 181552479 -2736183 + MIR SINE MIR 8 256 -6 299 267 141 26 chr4 181552500 181552691 -2735971 + MIR SINE MIR 18 230 -32 408 294 5 65 chr4 181553280 181553410 -2735252 + MIR SINE MIR 20 137 -125 1990 123 0 60 chr4 181553410 181553726 -2734936 + AluSx SINE Alu 1 297 -15 408 294 5 65 chr4 181553726 181553779 -2734883 + MIR SINE MIR 137 192 -70 208 357 112 21 chr4 181553832 181553975 -2734687 + L2 LINE L2 3112 3267 -5 28 61 0 0 chr4 181556174 181556223 -2732439 + AT_rich Low_complexity Low_complexity 1 49 0 49 52 0 0 chr4 181556261 181556338 -2732324 + AT_rich Low_complexity Low_complexity 1 77 0 193 161 323 0 chr4 181558114 181558176 -2730486 + L2 LINE L2 3197 3278 -35 2073 139 3 0 chr4 181558948 181559249 -2729413 + AluSx SINE Alu 6 307 -5 365 100 0 17 chr4 181559257 181559317 -2729345 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 651 291 87 4 chr4 181559561 181559802 -2728860 + MIR SINE MIR 2 262 0 204 308 69 44 chr4 181560470 181560629 -2728033 - MIR SINE MIR -17 245 83 208 281 0 18 chr4 181560958 181561015 -2727647 + GA-rich Low_complexity Low_complexity 1 56 0 591 260 53 24 chr4 181561779 181561948 -2726714 + MER45A DNA AcHobo 4 177 -1 863 201 129 40 chr4 181562206 181562484 -2726178 + MER33 DNA MER1_type 13 315 -9 208 263 70 35 chr4 181562670 181562784 -2725878 + L2 LINE L2 2513 2630 -684 835 148 0 15 chr4 181562802 181562937 -2725725 - FLAM_C SINE Alu -10 133 1 356 250 115 95 chr4 181563209 181563705 -2724957 - L1M2 LINE L1 -5611 1238 733 330 323 60 55 chr4 181564293 181564510 -2724152 - MIR SINE MIR -31 231 14 241 314 66 25 chr4 181566531 181566652 -2722010 - MIR SINE MIR -118 144 19 2078 122 14 3 chr4 181566652 181566947 -2721715 + AluSx SINE Alu 6 303 -9 2711 163 52 5 chr4 181567494 181568390 -2720272 - L1MA9 LINE L1 0 6312 5315 225 0 0 0 chr4 181568398 181568423 -2720239 + (TC)n Simple_repeat Simple_repeat 2 26 0 313 263 80 44 chr4 181568574 181568711 -2719951 + MIR SINE MIR 107 248 -14 21 0 0 0 chr4 181571430 181571451 -2717211 + AT_rich Low_complexity Low_complexity 1 21 0 2219 103 0 3 chr4 181573179 181573491 -2715171 - AluYa5 SINE Alu 0 311 1 311 44 22 0 chr4 181575982 181576027 -2712635 + (GA)n Simple_repeat Simple_repeat 2 47 0 270 360 58 25 chr4 181577405 181577647 -2711015 + MIR SINE MIR 2 251 -11 718 244 161 42 chr4 181577813 181577908 -2710754 + MSTD LTR MaLR 2 84 -312 1792 173 49 32 chr4 181577908 181578277 -2710385 - THE1C LTR MaLR 0 375 1 718 244 161 42 chr4 181578277 181578339 -2710323 + MSTD LTR MaLR 84 137 -259 5445 160 28 65 chr4 181578339 181579447 -2709215 + MER11C LTR ERVK 1 1067 -4 718 244 161 42 chr4 181579447 181579641 -2709021 + MSTD LTR MaLR 137 396 0 264 337 120 47 chr4 181580582 181580983 -2707679 + L2 LINE L2 2825 3254 -18 512 344 100 21 chr4 181581389 181581722 -2706940 - L2 LINE L2 -2 3311 3006 4658 130 102 51 chr4 181581722 181582581 -2706081 - MER4D LTR ERV1 0 903 1 512 344 100 21 chr4 181582581 181582808 -2705854 - L2 LINE L2 -307 3006 2798 2161 118 24 0 chr4 181582808 181583104 -2705558 - AluSg SINE Alu -7 303 1 512 344 100 21 chr4 181583104 181583247 -2705415 - L2 LINE L2 -515 2798 2556 180 111 0 0 chr4 181583332 181583359 -2705303 + (TG)n Simple_repeat Simple_repeat 1 27 0 192 350 100 0 chr4 181583792 181583912 -2704750 + L2 LINE L2 3179 3310 -3 228 298 81 57 chr4 181584452 181584576 -2704086 - L2 LINE L2 -13 3259 3133 2187 129 0 3 chr4 181585838 181586148 -2702514 + AluSx SINE Alu 1 309 -3 2323 95 0 0 chr4 181588211 181588529 -2700133 - AluSg SINE Alu 0 318 1 2496 84 0 3 chr4 181589370 181589681 -2698981 - AluSg SINE Alu 0 310 1 343 307 37 33 chr4 181590550 181590765 -2697897 - MLT1J LTR MaLR -46 465 250 261 197 99 14 chr4 181592078 181592149 -2696513 - L2 LINE L2 0 3272 3196 278 256 58 50 chr4 181593537 181593658 -2695004 + MIR SINE MIR 54 175 -87 244 345 11 0 chr4 181594208 181594295 -2694367 + L2 LINE L2 3184 3271 -1 23 0 0 0 chr4 181594949 181594972 -2693690 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr4 181595127 181595152 -2693510 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr4 181595187 181595208 -2693454 + AT_rich Low_complexity Low_complexity 1 21 0 349 243 114 21 chr4 181595247 181595387 -2693275 + L1ME LINE L1 5613 5765 -356 261 307 132 18 chr4 181595611 181595725 -2692937 + L2 LINE L2 3187 3313 0 991 224 6 0 chr4 181596625 181596799 -2691863 - FAM SINE Alu 0 175 1 793 139 42 35 chr4 181597197 181597341 -2691321 + FRAM SINE Alu 20 164 -12 24 67 0 0 chr4 181597816 181597861 -2690801 + AT_rich Low_complexity Low_complexity 1 45 0 2453 73 7 0 chr4 181597907 181598207 -2690455 - L1PA8 LINE L1 0 6172 5871 1797 181 7 3 chr4 181598761 181599060 -2689602 + AluJo SINE Alu 1 300 -12 2185 103 3 0 chr4 181599527 181599818 -2688844 + AluSx SINE Alu 1 292 -20 750 195 0 0 chr4 181600097 181600220 -2688442 + FLAM_C SINE Alu 2 124 -19 2396 91 10 0 chr4 181600729 181601037 -2687625 - AluSp SINE Alu -2 311 1 22 0 0 0 chr4 181601813 181601835 -2686827 + AT_rich Low_complexity Low_complexity 1 22 0 225 227 160 0 chr4 181602505 181602580 -2686082 - MIR SINE MIR -9 253 167 455 316 106 17 chr4 181602741 181602978 -2685684 - MIR SINE MIR 0 262 5 192 77 0 0 chr4 181603145 181603171 -2685491 + (T)n Simple_repeat Simple_repeat 1 26 0 28 0 0 0 chr4 181603557 181603585 -2685077 + AT_rich Low_complexity Low_complexity 1 28 0 2226 100 3 10 chr4 181604356 181604655 -2684007 + AluSp SINE Alu 1 297 -16 25 31 0 0 chr4 181605390 181605422 -2683240 + AT_rich Low_complexity Low_complexity 1 32 0 365 312 163 41 chr4 181605522 181606013 -2682649 + L2 LINE L2 2328 2878 -436 181 281 62 78 chr4 181606294 181606422 -2682240 + L2 LINE L2 3188 3313 0 4044 113 57 5 chr4 181607100 181607711 -2680951 - LTR9B LTR ERV1 0 644 2 354 252 74 30 chr4 181607960 181608095 -2680567 - L2 LINE L2 0 3313 3173 1511 141 60 46 chr4 181608462 181608745 -2679917 + AluJo SINE Alu 1 287 -25 383 300 29 47 chr4 181608893 181609063 -2679599 - MIR SINE MIR -7 255 89 329 217 0 0 chr4 181610440 181610500 -2678162 - FLAM SINE Alu -2 131 72 22 0 0 0 chr4 181610588 181610610 -2678052 + AT_rich Low_complexity Low_complexity 1 22 0 420 333 19 19 chr4 181612496 181612680 -2675982 - MIR SINE MIR -35 227 40 200 167 0 0 chr4 181613582 181613612 -2675050 + polypyrimidine Low_complexity Low_complexity 2 31 0 606 113 0 0 chr4 181614114 181614211 -2674451 + (TA)n Simple_repeat Simple_repeat 1 97 0 269 217 33 11 chr4 181614693 181614785 -2673877 + (TA)n Simple_repeat Simple_repeat 2 95 0 342 77 0 2 chr4 181614787 181614837 -2673825 + L1P5 LINE L1 5616 5664 -492 3194 159 35 6 chr4 181614862 181615376 -2673286 + L1PB4 LINE L1 5621 6149 -7 1366 103 0 0 chr4 181615666 181615850 -2672812 + AluSg/x SINE Alu 129 312 0 184 333 14 0 chr4 181615922 181615994 -2672668 - MIR SINE MIR -176 86 14 599 177 40 0 chr4 181616388 181616512 -2672150 - FRAM SINE Alu -16 160 32 299 232 0 29 chr4 181616519 181616588 -2672074 - AluSp SINE Alu -110 193 127 315 298 16 41 chr4 181616836 181616957 -2671705 - MIR SINE MIR -61 201 84 1974 146 14 3 chr4 181617067 181617361 -2671301 - AluJo SINE Alu -15 297 1 1716 252 81 22 chr4 181617410 181617990 -2670672 + HsTC2a DNA Tc2 1 614 -130 2576 71 0 0 chr4 181618139 181618448 -2670214 + AluSq SINE Alu 1 309 -4 194 269 58 0 chr4 181619529 181619581 -2669081 + L3b LINE CR1 1433 1487 -96 276 215 25 25 chr4 181621386 181621465 -2667197 + CT-rich Low_complexity Low_complexity 4 82 0 308 281 163 19 chr4 181621916 181622076 -2666586 - L2 LINE L2 -550 2764 2582 1026 172 34 29 chr4 181622458 181622667 -2665995 + MER20 DNA MER1_type 1 210 -9 4128 178 59 9 chr4 181622669 181623068 -2665594 + MER21B LTR ERV1 48 425 -438 1810 166 0 3 chr4 181623068 181623364 -2665298 - AluJb SINE Alu -17 295 1 4128 178 59 9 chr4 181623364 181623740 -2664922 + MER21B LTR ERV1 425 862 -1 467 296 86 0 chr4 181624238 181624390 -2664272 + LTR33 LTR ERVL 1 165 -356 2470 60 0 3 chr4 181625121 181625420 -2663242 - AluY SINE Alu -13 298 1 353 306 0 19 chr4 181625704 181625812 -2662850 - MER5A DNA MER1_type 0 189 84 2311 89 0 35 chr4 181626093 181626408 -2662254 - AluSc SINE Alu -5 304 1 466 299 56 26 chr4 181626420 181626654 -2662008 + MIR SINE MIR 18 258 -4 2267 50 7 14 chr4 181626861 181627172 -2661490 - AluY SINE Alu 0 309 1 1187 225 89 54 chr4 181627916 181628321 -2660341 - MER31B LTR ERV1 0 466 48 225 0 0 0 chr4 181628553 181628578 -2660084 + (TC)n Simple_repeat Simple_repeat 2 26 0 232 119 71 95 chr4 181628578 181628662 -2660000 + L1MC4 LINE L1 6614 6695 -1347 2175 167 44 71 chr4 181629936 181630414 -2658248 - MLT1C LTR MaLR -2 465 1 189 287 93 39 chr4 181630814 181630943 -2657719 - L2 LINE L2 0 3272 3137 2166 97 10 3 chr4 181631060 181631185 -2657477 + AluSq SINE Alu 8 131 -182 207 0 0 0 chr4 181631185 181631208 -2657454 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2166 97 10 3 chr4 181631208 181631372 -2657290 + AluSq SINE Alu 131 299 -14 21 0 0 0 chr4 181631881 181631902 -2656760 + AT_rich Low_complexity Low_complexity 1 21 0 208 215 31 15 chr4 181632054 181632119 -2656543 - MIR SINE MIR -25 237 172 1831 153 7 23 chr4 181632432 181632733 -2655929 - AluJb SINE Alu -16 296 1 215 158 26 0 chr4 181633417 181633455 -2655207 + (CACAG)n Simple_repeat Simple_repeat 2 40 0 288 0 0 0 chr4 181633744 181633776 -2654886 + (TGAG)n Simple_repeat Simple_repeat 3 34 0 2073 113 41 0 chr4 181634580 181634872 -2653790 - AluSx SINE Alu -8 304 1 411 21 0 0 chr4 181634958 181635006 -2653656 + (CA)n Simple_repeat Simple_repeat 2 49 0 2194 314 141 31 chr4 181635128 181636088 -2652574 + L2 LINE L2 814 1667 -1646 2315 71 10 7 chr4 181636088 181636384 -2652278 - AluSp SINE Alu -16 297 1 2194 314 141 31 chr4 181636384 181637444 -2651218 + L2 LINE L2 1667 3111 -202 1037 176 88 19 chr4 181637444 181637649 -2651013 + MER20 DNA MER1_type 1 219 0 2194 314 141 31 chr4 181637649 181637706 -2650956 + L2 LINE L2 3111 3160 -153 766 283 96 9 chr4 181637696 181637926 -2650736 - MIR SINE MIR 0 262 13 * 252 279 139 16 chr4 181637963 181638085 -2650577 + L2 LINE L2 3176 3312 -1 196 294 43 43 chr4 181638315 181638407 -2650255 - MIR3 SINE MIR -4 204 113 2100 138 0 0 chr4 181638408 181638705 -2649957 + AluSx SINE Alu 1 297 -15 2229 112 0 0 chr4 181638929 181639225 -2649437 - AluSg SINE Alu -14 296 1 543 265 123 89 chr4 181639815 181640582 -2648080 + L1MC4 LINE L1 7250 8042 0 183 306 34 105 chr4 181642299 181642508 -2646154 - L2 LINE L2 -177 3095 2902 385 214 20 20 chr4 181642659 181642757 -2645905 + U13 snRNA snRNA 1 98 -6 418 315 79 15 chr4 181644067 181644177 -2644485 + MIR SINE MIR 36 138 -124 2284 107 3 10 chr4 181644177 181644487 -2644175 - AluSq SINE Alu -5 308 1 418 315 79 15 chr4 181644487 181644579 -2644083 + MIR SINE MIR 138 251 -11 2436 98 0 0 chr4 181645087 181645394 -2643268 - AluSx SINE Alu -5 307 1 215 232 12 61 chr4 181645493 181645575 -2643087 + MIR SINE MIR 183 260 -2 2162 109 10 0 chr4 181646548 181646841 -2641821 + AluSg SINE Alu 1 296 -14 214 370 97 26 chr4 181648421 181648575 -2640087 - L2 LINE L2 -9 3263 3099 2183 97 10 10 chr4 181648605 181648903 -2639759 - AluSx SINE Alu -13 299 2 2243 87 3 0 chr4 181649609 181649896 -2638766 + AluSx SINE Alu 1 288 -24 23 0 0 0 chr4 181651030 181651053 -2637609 + AT_rich Low_complexity Low_complexity 1 23 0 1932 140 27 0 chr4 181651254 181651554 -2637108 + AluSq SINE Alu 1 308 -5 2269 110 3 0 chr4 181653734 181654081 -2634581 - AluSq SINE Alu 0 350 3 225 0 0 0 chr4 181654084 181654109 -2634553 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 951 227 143 7 chr4 181654132 181654418 -2634244 + HAL1 LINE L1 13 337 -2170 743 294 141 13 chr4 181654428 181654812 -2633850 + HAL1 LINE L1 413 845 -1662 2824 196 107 41 chr4 181654917 181655696 -2632966 + Tigger6b DNA MER2_type 113 942 -655 2075 184 98 37 chr4 181655693 181655773 -2632889 + Tigger6b DNA MER2_type 1079 1153 -444 * 1991 124 7 0 chr4 181655773 181656046 -2632616 + AluSx SINE Alu 1 275 -37 201 74 0 0 chr4 181656052 181656079 -2632583 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 2075 184 98 37 chr4 181656079 181656479 -2632183 + Tigger6b DNA MER2_type 1157 1596 -1 601 264 158 7 chr4 181656486 181656778 -2631884 + HAL1 LINE L1 1006 1341 -1166 1050 171 90 43 chr4 181656853 181657064 -2631598 + AluJo SINE Alu 6 226 -86 2251 267 87 25 chr4 181657101 181658010 -2630652 + HAL1 LINE L1 1427 2391 -116 21 0 0 0 chr4 181659657 181659678 -2628984 + AT_rich Low_complexity Low_complexity 1 21 0 35 0 0 0 chr4 181659723 181659758 -2628904 + AT_rich Low_complexity Low_complexity 1 35 0 2162 197 133 37 chr4 181661185 181661259 -2627403 - LTR48B LTR ERV1 0 644 578 2340 91 0 0 chr4 181661259 181661555 -2627107 + AluSx SINE Alu 1 296 -16 2162 197 133 37 chr4 181661555 181662068 -2626594 - LTR48B LTR ERV1 -66 578 1 2877 223 43 21 chr4 181662076 181662732 -2625930 - MER39 LTR ERV1 0 707 1 2366 87 3 0 chr4 181662761 181663070 -2625592 - AluSx SINE Alu -2 310 1 2755 203 43 82 chr4 181663129 181664009 -2624653 - MER39-int LTR ERV1 -170 6161 5316 * 3253 174 113 60 chr4 181664000 181665025 -2623637 - MER39-int LTR ERV1 -1127 5013 3779 522 248 30 73 chr4 181665118 181665352 -2623310 - MER39-int LTR ERV1 -1951 2929 2706 * 538 252 50 44 chr4 181665344 181665747 -2622915 - MER39-int LTR ERV1 -2934 2002 1713 458 192 0 0 chr4 181665887 181665960 -2622702 - LTR49-int LTR ERV1 -2995 3336 3264 1908 199 79 113 chr4 181666173 181667144 -2621518 - LTR1B LTR ERV1 0 1020 1 375 158 2 46 chr4 181667144 181667156 -2621506 - LTR49-int LTR ERV1 -3517 1419 1408 378 171 0 14 chr4 181667156 181667226 -2621436 - LTR57-int LTR ERVL -4246 1097 1029 2192 138 0 0 chr4 181667342 181667646 -2621016 + AluSx SINE Alu 1 304 -8 496 205 10 176 chr4 181667779 181667984 -2620678 + MER73 LTR ERVL 24 194 -450 294 259 0 0 chr4 181667987 181668045 -2620617 - MER31A LTR ERV1 -402 83 26 943 231 11 30 chr4 181668045 181668289 -2620373 - LTR49-int LTR ERV1 -3673 2658 751 826 249 114 122 chr4 181668685 181668812 -2619850 - LTR49-int LTR ERV1 -4100 2231 2104 2404 101 0 0 chr4 181668812 181669118 -2619544 + AluSx SINE Alu 1 306 -6 826 249 114 122 chr4 181669118 181669605 -2619057 - LTR49-int LTR ERV1 -4227 2104 1622 878 129 24 0 chr4 181669605 181669729 -2618933 + AluJo SINE Alu 1 127 -185 1244 153 61 4 chr4 181670007 181670236 -2618426 + L1MA8 LINE L1 6047 6288 -3 2131 135 7 0 chr4 181670952 181671249 -2617413 - AluSx SINE Alu -13 299 1 2037 131 10 13 chr4 181672426 181672739 -2615923 + AluSx SINE Alu 1 312 0 432 340 79 21 chr4 181673250 181673779 -2614883 + L2 LINE L2 2378 2937 -377 207 0 0 0 chr4 181673847 181673870 -2614792 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6803 20 4 0 chr4 181673873 181674609 -2614053 - L1PA4 LINE L1 -10 6145 5407 230 348 14 0 chr4 181674847 181674916 -2613746 - MIR SINE MIR -58 150 81 317 266 28 28 chr4 181675783 181675892 -2612770 + GA-rich Low_complexity Low_complexity 1 109 0 1142 248 49 48 chr4 181676231 181676941 -2611721 + HAL1b LINE L1 259 1109 -239 3839 241 65 7 chr4 181676956 181678521 -2610141 + L1ME1 LINE L1 4153 5812 -354 1034 134 23 29 chr4 181678523 181678695 -2609967 + AluJo SINE Alu 118 288 -24 1328 230 40 12 chr4 181678722 181679044 -2609618 + L1ME1 LINE L1 5831 6161 -5 21 36 0 0 chr4 181679292 181679320 -2609342 + AT_rich Low_complexity Low_complexity 1 28 0 564 297 45 116 chr4 181681013 181681121 -2607541 + L3 LINE CR1 911 1025 -552 2341 105 0 0 chr4 181681121 181681426 -2607236 + AluY SINE Alu 7 311 0 564 297 45 116 chr4 181681426 181681956 -2606706 + L3 LINE CR1 1025 1504 -73 297 0 0 0 chr4 181682802 181682835 -2605827 + (TG)n Simple_repeat Simple_repeat 2 34 0 198 0 0 0 chr4 181682901 181682923 -2605739 + (TTA)n Simple_repeat Simple_repeat 2 23 0 1131 219 202 47 chr4 181683013 181683438 -2605224 + MLT1D LTR MaLR 13 503 -2 2318 116 0 0 chr4 181684725 181685026 -2603636 - AluSx SINE Alu -9 303 3 206 290 54 11 chr4 181685178 181685271 -2603391 - MIR SINE MIR -8 254 158 231 36 0 0 chr4 181685790 181685818 -2602844 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 315 279 67 10 chr4 181685831 181685935 -2602727 + MIR3 SINE MIR 99 208 0 1976 154 102 35 chr4 181686076 181686675 -2601987 + LTR8A LTR ERV1 1 727 0 1815 112 4 8 chr4 181686680 181686939 -2601723 - AluSc SINE Alu -16 293 36 2708 174 13 2 chr4 181687302 181687774 -2600888 + L1MB3 LINE L1 5685 6161 -22 1641 178 64 137 chr4 181688349 181688990 -2599672 - LTR49 LTR ERV1 -1 594 1 2224 112 0 0 chr4 181691143 181691446 -2597216 + AluSq SINE Alu 1 303 -10 3885 147 37 0 chr4 181691844 181692470 -2596192 + MER39B LTR ERV1 5 653 0 2124 128 0 0 chr4 181692596 181692892 -2595770 + AluSx SINE Alu 1 296 -16 198 374 49 45 chr4 181693113 181693378 -2595284 - L2 LINE L2 -606 2708 2443 1581 45 0 0 chr4 181694002 181694180 -2594482 - AluY SINE Alu -133 178 1 2923 191 29 25 chr4 181694279 181694767 -2593895 - MER39 LTR ERV1 -3 704 212 1993 128 7 7 chr4 181694767 181695093 -2593569 - AluSg SINE Alu 0 310 1 2923 191 29 25 chr4 181695093 181695232 -2593430 - MER39 LTR ERV1 -495 212 75 1957 164 3 6 chr4 181695751 181696063 -2592599 - AluJo SINE Alu 0 312 2 905 154 0 0 chr4 181696284 181696427 -2592235 + AluJb SINE Alu 156 298 -14 447 260 48 103 chr4 181696429 181696702 -2591960 + L1ME2 LINE L1 1649 1906 -4490 634 100 0 11 chr4 181696713 181696803 -2591859 + Alu SINE Alu 222 310 -2 5919 253 76 44 chr4 181696804 181697272 -2591390 + L1ME2 LINE L1 1914 2366 -3849 2339 91 0 10 chr4 181697272 181697580 -2591082 + AluSg SINE Alu 1 305 -5 5919 253 76 44 chr4 181697580 181698318 -2590344 + L1ME2 LINE L1 2366 3079 -3136 1958 138 0 26 chr4 181698318 181698622 -2590040 + AluSc SINE Alu 1 296 -13 5919 253 76 44 chr4 181698622 181699499 -2589163 + L1ME2 LINE L1 3079 3927 -2288 2126 122 0 31 chr4 181699499 181699819 -2588843 - AluSx SINE Alu -2 310 1 5919 253 76 44 chr4 181699819 181700190 -2588472 + L1ME2 LINE L1 3927 4285 -1930 2060 80 43 4 chr4 181700190 181700466 -2588196 + AluSp SINE Alu 26 312 -1 5919 253 76 44 chr4 181700466 181701038 -2587624 + L1ME2 LINE L1 4285 4999 -1216 3448 109 0 6 chr4 181701057 181701532 -2587130 + MER9 LTR ERVK 40 511 0 293 284 168 5 chr4 181701537 181701734 -2586928 + L1ME2 LINE L1 5007 5235 -980 745 140 0 0 chr4 181701734 181701834 -2586828 - FRAM SINE Alu -13 163 64 1777 201 9 62 chr4 181701834 181702272 -2586390 + L1ME2 LINE L1 5809 6223 -10 2332 160 10 10 chr4 181702298 181702698 -2585964 + MER57A LTR ERV1 1 400 -3 204 194 0 0 chr4 181702961 181702997 -2585665 + (CAT)n Simple_repeat Simple_repeat 2 37 0 1947 118 4 4 chr4 181702997 181703277 -2585385 - AluSc SINE Alu -29 280 1 1042 236 50 134 chr4 181703771 181704239 -2584423 - L1MEc LINE L1 -4332 1929 1532 1859 181 0 3 chr4 181704239 181704548 -2584114 - AluJb SINE Alu -4 308 1 1042 236 50 134 chr4 181704548 181704752 -2583910 - L1MEc LINE L1 -4729 1532 1313 913 184 0 0 chr4 181704758 181704910 -2583752 + AluSg/x SINE Alu 132 283 -27 304 287 54 23 chr4 181704919 181705016 -2583646 - L1MEc LINE L1 -4942 1319 1216 228 35 0 0 chr4 181705016 181705045 -2583617 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 304 287 54 23 chr4 181705045 181705076 -2583586 - L1MEc LINE L1 -5045 1216 1187 567 258 63 84 chr4 181705086 181705293 -2583369 - L1MEc LINE L1 -5006 1064 854 1136 167 24 16 chr4 181705293 181705539 -2583123 - L1MA9 LINE L1 -1 6311 6064 1725 157 0 99 chr4 181705548 181705724 -2582938 - AluJb SINE Alu -3 299 170 1272 49 0 27 chr4 181705724 181705908 -2582754 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1725 157 0 99 chr4 181705908 181706063 -2582599 - AluJb SINE Alu -132 170 1 567 258 63 84 chr4 181706063 181706149 -2582513 - L1MEc LINE L1 -5224 846 760 1369 146 31 18 chr4 181706149 181706375 -2582287 - L1PA16 LINE L1 -3 6163 5935 567 258 63 84 chr4 181706375 181706672 -2581990 - L1MEc LINE L1 -5310 760 527 2680 94 16 19 chr4 181706920 181707292 -2581370 - L1PA10 LINE L1 -4 6164 5794 246 359 7 28 chr4 181707334 181707479 -2581183 - L1MEc LINE L1 -5646 424 283 23 33 0 0 chr4 181707812 181707842 -2580820 + AT_rich Low_complexity Low_complexity 1 30 0 1525 197 23 16 chr4 181708058 181708362 -2580300 + AluJo SINE Alu 1 306 -6 280 277 44 36 chr4 181709209 181709346 -2579316 + MER20B DNA MER1_type 15 152 -631 2246 78 3 0 chr4 181709409 181709728 -2578934 + AluSq SINE Alu 1 320 0 324 244 93 0 chr4 181710121 181710207 -2578455 - MER5A DNA MER1_type -87 102 9 549 202 10 10 chr4 181710267 181710371 -2578291 - L2 LINE L2 -527 2787 2684 475 222 26 0 chr4 181710431 181710548 -2578114 - L1ME4a LINE L1 -29 6092 5973 519 333 80 28 chr4 181711629 181711878 -2576784 + L1MEd LINE L1 248 509 -5610 243 267 0 0 chr4 181713396 181713456 -2575206 + (AATTG)n Simple_repeat Simple_repeat 3 62 0 288 244 23 12 chr4 181713743 181713829 -2574833 + L2 LINE L2 3227 3313 0 248 227 193 42 chr4 181714173 181714292 -2574370 - MIR SINE MIR -96 166 30 200 277 118 34 chr4 181714505 181714624 -2574038 + MIR SINE MIR 111 239 -23 502 261 118 6 chr4 181714775 181714936 -2573726 + LTR16C LTR ERVL 282 460 -31 5009 137 30 20 chr4 181714936 181715804 -2572858 + L1PB4 LINE L1 5276 6152 -4 2479 212 36 13 chr4 181715864 181716396 -2572266 - MLT2B3 LTR ERVL 0 554 11 2262 120 0 0 chr4 181716930 181717230 -2571432 + AluSx SINE Alu 1 300 -12 193 266 16 47 chr4 181717859 181717923 -2570739 + MIR3 SINE MIR 14 75 -133 369 309 51 6 chr4 181718332 181718507 -2570155 - MLT1J2 LTR MaLR -218 232 50 2198 103 20 3 chr4 181718732 181719024 -2569638 - AluSx SINE Alu -15 297 1 488 281 89 31 chr4 181720963 181721293 -2567369 - MLT1J2 LTR MaLR -68 382 59 272 298 0 32 chr4 181723151 181723245 -2565417 - MIR SINE MIR -101 161 71 380 316 39 22 chr4 181724348 181724496 -2564166 + MIR SINE MIR 14 172 -36 5268 133 49 38 chr4 181724978 181725447 -2563215 - L1MA5A LINE L1 0 6297 5834 237 83 0 0 chr4 181725447 181725483 -2563179 + (TG)n Simple_repeat Simple_repeat 2 37 0 5268 133 49 38 chr4 181725483 181725615 -2563047 - L1MA5A LINE L1 -463 5834 5705 1987 148 0 20 chr4 181725615 181725913 -2562749 + AluSq SINE Alu 2 293 -20 5268 133 49 38 chr4 181725913 181726256 -2562406 - L1MA5A LINE L1 -592 5705 5342 555 202 0 0 chr4 181726258 181726362 -2562300 + AluJb SINE Alu 202 305 -7 7739 171 34 7 chr4 181726362 181727817 -2560845 - L1MA5A LINE L1 -801 5345 3852 837 317 37 42 chr4 181728591 181729111 -2559551 + MLT1K LTR MaLR 43 586 -2 388 367 69 48 chr4 181729443 181729819 -2558843 + L2 LINE L2 2868 3251 -21 2340 116 0 0 chr4 181730130 181730441 -2558221 - AluSq SINE Alu 0 313 3 2102 132 0 3 chr4 181730943 181731247 -2557415 + AluSx SINE Alu 1 303 -9 201 280 56 65 chr4 181732238 181732345 -2556317 + MER5A DNA MER1_type 52 157 -32 354 356 6 23 chr4 181732563 181732740 -2555922 - MER5B DNA MER1_type -4 174 1 216 97 0 0 chr4 181733474 181733505 -2555157 + (CA)n Simple_repeat Simple_repeat 2 32 0 451 133 13 0 chr4 181937322 181937397 -2351265 - AluS SINE Alu -236 77 2 814 195 29 29 chr4 181937843 181938048 -2350614 - PABL_B LTR ERV1 0 667 463 277 320 0 11 chr4 181938623 181938804 -2349858 + (TCTG)n Simple_repeat Simple_repeat 1 179 0 267 313 0 16 chr4 181938914 181939096 -2349566 + (TCTG)n Simple_repeat Simple_repeat 1 179 0 192 346 0 0 chr4 181939493 181939574 -2349088 + MIR3 SINE MIR 123 203 -5 469 263 9 9 chr4 181939714 181939828 -2348834 + MER63A DNA MER1_type 97 210 0 397 206 20 10 chr4 181940006 181940108 -2348554 - L2 LINE L2 -10 3303 3201 2222 119 3 0 chr4 181940331 181940633 -2348029 - AluSx SINE Alu -9 303 1 198 344 61 6 chr4 181940671 181940834 -2347828 - L2 LINE L2 -2153 1161 990 604 244 220 77 chr4 181941022 181941490 -2347172 + MLT1G LTR MaLR 48 577 -13 255 252 30 53 chr4 181941591 181941722 -2346940 - HAL1b LINE L1 -881 467 340 21 0 0 0 chr4 181942043 181942064 -2346598 + AT_rich Low_complexity Low_complexity 1 21 0 913 218 0 0 chr4 181942478 181942652 -2346010 - AluJb SINE Alu -2 310 137 8543 127 9 6 chr4 181943587 181946012 -2342650 - L1MA1 LINE L1 0 6302 3868 182 333 33 0 chr4 181948167 181948257 -2340405 - MIR3 SINE MIR -7 201 109 1634 105 35 51 chr4 181948447 181948704 -2339958 + AluSq SINE Alu 48 300 -13 2184 116 0 25 chr4 181948704 181949022 -2339640 + AluSp SINE Alu 1 311 -2 1838 84 8 4 chr4 181949469 181949708 -2338954 + AluY SINE Alu 54 293 -18 528 191 34 103 chr4 181949793 181949997 -2338665 - AluSg/x SINE Alu -3 306 117 2049 117 48 0 chr4 181952091 181952382 -2336280 + AluY SINE Alu 5 309 -2 2306 85 3 57 chr4 181952524 181952855 -2335807 + AluSp SINE Alu 1 313 0 2108 133 16 3 chr4 181953042 181953213 -2335449 - AluSx SINE Alu 0 458 291 582 54 0 0 chr4 181953213 181953287 -2335375 + (TTCC)n Simple_repeat Simple_repeat 3 76 0 2108 133 16 3 chr4 181953287 181953569 -2335093 - AluSx SINE Alu -167 291 1 2198 97 21 0 chr4 181954480 181954769 -2333893 - AluSx SINE Alu -17 295 1 1097 132 44 83 chr4 181956032 181956273 -2332389 + AluJb SINE Alu 87 319 0 21 71 0 0 chr4 181956404 181956446 -2332216 + AT_rich Low_complexity Low_complexity 1 42 0 848 217 137 59 chr4 181956623 181957143 -2331519 + MER34B LTR ERV1 9 563 -2 * 1200 171 71 74 chr4 181957141 181957709 -2330953 + MER4C LTR ERV1 1 440 -25 2263 97 20 3 chr4 181957719 181958018 -2330644 + AluSc SINE Alu 1 304 -5 1320 249 43 45 chr4 181958053 181958549 -2330113 - L1MC5 LINE L1 -98 7863 7367 623 179 231 0 chr4 181958549 181958683 -2329979 - FAM SINE Alu -10 165 1 1320 249 43 45 chr4 181958683 181958792 -2329870 - L1MC5 LINE L1 -594 7367 7259 2072 172 78 28 chr4 181959062 181959487 -2329175 - MER4E LTR ERV1 0 779 334 605 153 0 57 chr4 181959488 181959612 -2329050 + AluSc SINE Alu 193 309 0 1754 157 20 64 chr4 181959625 181959982 -2328680 - MER4E LTR ERV1 -438 341 1 21 0 0 0 chr4 181960136 181960157 -2328505 + AT_rich Low_complexity Low_complexity 1 21 0 299 315 9 27 chr4 181960694 181960772 -2327890 - LTR16A LTR ERVL -14 436 359 1234 265 85 42 chr4 181960772 181961292 -2327370 + MER34 LTR ERV1 1 542 0 299 315 9 27 chr4 181961292 181961324 -2327338 - LTR16A LTR ERVL -91 359 328 2074 132 0 0 chr4 181961459 181961747 -2326915 - AluSx SINE Alu -5 307 20 850 153 0 0 chr4 181962456 181962580 -2326082 + FLAM_C SINE Alu 1 124 -19 31 0 0 0 chr4 181962920 181962951 -2325711 + AT_rich Low_complexity Low_complexity 1 31 0 27 0 0 0 chr4 181963051 181963078 -2325584 + AT_rich Low_complexity Low_complexity 1 27 0 920 230 88 100 chr4 181964106 181964328 -2324334 + MER34C LTR ERV1 45 268 -317 1699 165 0 18 chr4 181964328 181964601 -2324061 - AluJo SINE Alu -21 291 24 1396 209 16 3 chr4 181964606 181964912 -2323750 - AluJo SINE Alu -2 310 1 920 230 88 100 chr4 181964912 181965231 -2323431 + MER34C LTR ERV1 272 585 0 2073 96 68 10 chr4 181965421 181965713 -2322949 - AluSq SINE Alu -3 310 2 1118 223 69 33 chr4 181966018 181966471 -2322191 - LTR48B LTR ERV1 0 644 137 256 316 0 0 chr4 181966476 181966552 -2322110 - MER34 LTR ERV1 -446 96 21 1277 197 119 81 chr4 181966898 181967448 -2321214 + MER34B LTR ERV1 1 542 0 2866 190 11 5 chr4 181967800 181968347 -2320315 + LTR27 LTR ERV1 2 1259 -140 915 220 116 91 chr4 181968442 181968979 -2319683 - MER34C LTR ERV1 0 585 36 1730 163 11 7 chr4 181969074 181969351 -2319311 + AluJb SINE Alu 12 289 -23 369 76 45 0 chr4 181969351 181969417 -2319245 + GA-rich Low_complexity Low_complexity 1 69 0 3438 141 18 53 chr4 181969658 181969895 -2318767 + MER41B LTR ERV1 1 245 -390 1808 121 6 82 chr4 181969895 181970226 -2318436 + L1PA14 LINE L1 5852 6157 -4 3438 141 18 53 chr4 181970226 181970519 -2318143 + MER41B LTR ERV1 245 506 -129 2020 103 0 0 chr4 181970519 181970781 -2317881 - AluSg SINE Alu -6 304 43 3438 141 18 53 chr4 181970781 181970907 -2317755 + MER41B LTR ERV1 506 635 0 1370 208 50 20 chr4 181971509 181971812 -2316850 - AluJo SINE Alu 0 312 1 467 305 97 11 chr4 181971818 181972097 -2316565 - L1MC4a LINE L1 -1812 5996 5694 3468 161 79 14 chr4 181972098 181972756 -2315906 - MER67C LTR ERV1 0 710 10 2432 97 0 0 chr4 181972772 181973080 -2315582 - AluSg SINE Alu -2 308 1 231 341 16 0 chr4 181973206 181973335 -2315327 - L1MC4a LINE L1 -570 5600 5470 348 328 64 0 chr4 181973462 181973633 -2315029 - L1MC4a LINE L1 -768 5378 5197 3192 172 4 2 chr4 181973681 181974211 -2314451 + LTR26B LTR ERV1 1 531 0 556 265 60 96 chr4 181974283 181974585 -2314077 - MLT1F1 LTR MaLR -251 303 1 589 223 176 4 chr4 181974590 181974823 -2313839 - HAL1 LINE L1 -845 1662 1390 518 201 82 44 chr4 181974913 181975072 -2313590 - HAL1 LINE L1 -1553 954 790 872 208 30 59 chr4 181975235 181975354 -2313308 + LTR8 LTR ERV1 1 111 -580 2278 118 25 25 chr4 181975354 181975718 -2312944 + THE1B LTR MaLR 1 364 0 872 208 30 59 chr4 181975718 181975834 -2312828 + LTR8 LTR ERV1 111 229 -462 1814 181 41 137 chr4 181975851 181976457 -2312205 + LTR8A LTR ERV1 180 727 0 233 190 121 17 chr4 181976499 181976557 -2312105 - LTR33A LTR ERVL -161 362 299 475 333 26 0 chr4 181976661 181976814 -2311848 - LTR33 LTR ERVL -344 177 21 543 236 24 140 chr4 181976847 181977140 -2311522 - HAL1 LINE L1 -1802 705 447 1598 76 0 81 chr4 181977459 181977695 -2310967 - AluY SINE Alu -86 225 9 347 313 67 18 chr4 181977840 181978100 -2310562 - L2 LINE L2 -255 3058 2790 263 28 0 0 chr4 181978116 181978152 -2310510 - L1PA16 LINE L1 -3 6163 6128 21 71 0 0 chr4 181978300 181978342 -2310320 + AT_rich Low_complexity Low_complexity 1 42 0 1067 109 0 0 chr4 181978952 181979118 -2309544 - AluSg/x SINE Alu 0 312 147 1769 180 3 6 chr4 181979602 181979913 -2308749 + AluJo SINE Alu 1 310 -2 21 0 0 0 chr4 181981156 181981177 -2307485 + AT_rich Low_complexity Low_complexity 1 21 0 1428 95 6 0 chr4 181981458 181981637 -2307025 + AluSp SINE Alu 1 180 -133 237 33 0 0 chr4 181981742 181981772 -2306890 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 379 296 15 15 chr4 181982393 181982528 -2306134 + L2 LINE L2 3179 3313 0 299 305 55 37 chr4 181984675 181984839 -2303823 + MIR3 SINE MIR 9 175 -33 2371 90 7 3 chr4 181985231 181985532 -2303130 + AluSp SINE Alu 1 302 -11 2299 105 0 10 chr4 181986120 181986434 -2302228 + AluY SINE Alu 1 311 0 197 286 0 77 chr4 181987360 181987451 -2301211 - L3b LINE CR1 -207 1376 1293 1718 249 60 34 chr4 181987599 181988129 -2300533 - MLT1H1 LTR MaLR -10 545 2 2442 91 0 0 chr4 181988951 181989259 -2299403 + AluSg SINE Alu 1 308 -2 2191 108 3 13 chr4 181990174 181990480 -2298182 + AluSx SINE Alu 5 307 -5 1663 152 0 59 chr4 181990603 181990892 -2297770 - AluJb SINE Alu -27 285 14 2123 196 46 2 chr4 181991562 181991995 -2296667 + Tigger5 DNA MER2_type 1 452 -1871 569 145 0 0 chr4 181991999 181992082 -2296580 + Tigger5 DNA MER2_type 2240 2322 -1 346 299 39 0 chr4 181993248 181993375 -2295287 + HAL1b LINE L1 219 350 -998 2486 85 0 10 chr4 181993583 181993890 -2294772 + AluSq SINE Alu 3 306 -7 981 255 63 15 chr4 181994253 181994586 -2294076 - HsTC2 DNA Tc2 -5 1893 1545 334 250 65 37 chr4 181994936 181995044 -2293618 - HsTC2 DNA Tc2 -322 1576 1290 235 287 191 35 chr4 181995055 181995421 -2293241 - LTR33 LTR ERVL -31 490 68 1682 247 100 12 chr4 181995810 181996299 -2292363 + MER34 LTR ERV1 11 542 0 1933 134 14 0 chr4 181996370 181996653 -2292009 - AluSx SINE Alu -25 287 1 2009 123 126 50 chr4 181996824 181997222 -2291440 - MSTA LTR MaLR 0 428 1 1553 73 9 45 chr4 181999088 181999308 -2289354 + AluY SINE Alu 89 300 -11 675 187 0 47 chr4 182001431 182001581 -2287081 - L1MC4 LINE L1 -143 7899 7757 481 221 327 16 chr4 182001626 182001929 -2286733 - L1MC4 LINE L1 -408 7634 7238 1983 210 98 35 chr4 182001933 182002532 -2286130 - L1MC4 LINE L1 -797 7089 6441 1802 103 0 0 chr4 182003403 182003645 -2285017 - AluSq SINE Alu 0 313 72 808 281 81 29 chr4 182004072 182004621 -2284041 - L2 LINE L2 -19 3294 2721 2364 110 0 0 chr4 182005353 182005661 -2283001 - AluSx SINE Alu -4 308 1 518 202 6 0 chr4 182005860 182006028 -2282634 + (TG)n Simple_repeat Simple_repeat 1 169 0 512 221 0 11 chr4 182006065 182006246 -2282416 + (TG)n Simple_repeat Simple_repeat 1 179 0 223 311 91 8 chr4 182007168 182007300 -2281362 - L2 LINE L2 -2 3311 3169 555 138 0 0 chr4 182007509 182007596 -2281066 - U6 snRNA snRNA -20 87 1 189 0 0 0 chr4 182008057 182008078 -2280584 + (A)n Simple_repeat Simple_repeat 1 21 0 2197 87 0 7 chr4 182008127 182008416 -2280246 + AluSx SINE Alu 3 289 -23 941 197 76 15 chr4 182008564 182008762 -2279900 + MER20 DNA MER1_type 8 217 -2 789 225 67 17 chr4 182008786 182009026 -2279636 + MIR SINE MIR 4 255 -7 360 0 0 0 chr4 182009557 182009597 -2279065 + (TG)n Simple_repeat Simple_repeat 2 41 0 647 81 0 0 chr4 182010089 182010175 -2278487 + AluJ/FLAM SINE Alu 1 86 -226 22 0 0 0 chr4 182010573 182010595 -2278067 + AT_rich Low_complexity Low_complexity 1 22 0 3151 191 7 14 chr4 182010816 182011278 -2277384 - MER41D LTR ERV1 0 557 98 2464 108 5 68 chr4 182011278 182011678 -2276984 + THE1C LTR MaLR 1 375 0 3151 191 7 14 chr4 182011678 182011776 -2276886 - MER41D LTR ERV1 -459 98 1 356 304 71 13 chr4 182011817 182012041 -2276621 - L1MC4 LINE L1 -1931 5877 5641 286 54 0 0 chr4 182012170 182012207 -2276455 + MADE1 DNA Mariner 40 76 -4 743 146 32 8 chr4 182012804 182012927 -2275735 - FLAM_C SINE Alu -16 127 2 219 240 0 20 chr4 182012927 182012977 -2275685 + MER5B DNA MER1_type 34 82 -96 286 236 43 106 chr4 182013123 182013284 -2275378 - L1ME LINE L1 -467 6492 6342 289 211 58 19 chr4 182013297 182013401 -2275261 - L1ME LINE L1 -1079 5862 5755 1535 254 58 13 chr4 182013401 182013956 -2274706 - L1ME LINE L1 -1489 5452 4873 2294 235 58 43 chr4 182013958 182014682 -2273980 - L1ME LINE L1 -4968 1455 721 245 333 50 0 chr4 182014876 182014975 -2273687 - L1ME LINE L1 -5975 448 345 1492 167 27 15 chr4 182015023 182015286 -2273376 + AluJo SINE Alu 27 292 -20 306 287 56 0 chr4 182015297 182015405 -2273257 - MIR SINE MIR 0 262 149 1105 284 62 87 chr4 182015406 182016130 -2272532 - MER21B LTR ERV1 -152 711 6 414 301 16 0 chr4 182016130 182016253 -2272409 - MIR SINE MIR -120 142 18 299 308 175 25 chr4 182016269 182016708 -2271954 - L2 LINE L2 -817 2497 1993 505 104 0 0 chr4 182016830 182016897 -2271765 - AluJ/FRAM SINE Alu -25 287 221 1199 167 10 0 chr4 182016897 182017089 -2271573 - AluJo SINE Alu -37 275 82 283 314 23 0 chr4 182017108 182017194 -2271468 + L2 LINE L2 3138 3225 -47 1604 239 36 12 chr4 182017610 182018028 -2270634 + MER39 LTR ERV1 260 687 -20 831 174 0 0 chr4 182018397 182018529 -2270133 + FLAM_C SINE Alu 1 132 -1 1632 161 93 31 chr4 182018553 182018768 -2269894 - LOR1b LTR ERV1 -1 460 217 1866 119 24 0 chr4 182018768 182019020 -2269642 + AluSg SINE Alu 1 258 -52 1632 161 93 31 chr4 182019020 182019127 -2269535 - LOR1b LTR ERV1 -244 217 118 186 280 0 20 chr4 182019129 182019179 -2269483 + MER5A DNA MER1_type 141 189 0 838 196 24 62 chr4 182020809 182021018 -2267644 - MER34C LTR ERV1 -1 584 384 * 1383 161 38 19 chr4 182021010 182021277 -2267385 - MER34C LTR ERV1 -308 277 6 414 145 0 0 chr4 182021278 182021347 -2267315 - MER34C LTR ERV1 -511 74 6 402 162 0 0 chr4 182021315 182021383 -2267279 - MER34C LTR ERV1 -512 73 6 * 407 162 0 0 chr4 182021387 182021455 -2267207 - MER34C LTR ERV1 -512 73 6 396 159 0 0 chr4 182021456 182021525 -2267137 - MER34C LTR ERV1 -511 74 6 * 430 147 0 0 chr4 182021493 182021561 -2267101 - MER34C LTR ERV1 -512 73 6 400 174 0 0 chr4 182021562 182021631 -2267031 - MER34C LTR ERV1 -511 74 6 414 159 0 0 chr4 182021632 182021701 -2266961 - MER34C LTR ERV1 -511 74 6 388 191 0 0 chr4 182021669 182021737 -2266925 - MER34C LTR ERV1 -512 73 6 * 415 154 0 0 chr4 182021738 182021836 -2266826 - MER34C LTR ERV1 -507 78 6 522 135 0 0 chr4 182022603 182022707 -2265955 + (TG)n Simple_repeat Simple_repeat 1 104 0 506 220 17 12 chr4 182023137 182023310 -2265352 + G-rich Low_complexity Low_complexity 5 178 0 1737 131 61 71 chr4 182023310 182023614 -2265048 + LTR56 LTR ERV1 16 322 -115 2208 95 18 0 chr4 182023614 182023899 -2264763 + AluSc SINE Alu 1 290 -19 1449 148 112 36 chr4 182023908 182024185 -2264477 + AluJo SINE Alu 2 299 -13 2213 104 10 0 chr4 182024189 182024477 -2264185 + AluSc SINE Alu 3 293 -16 1737 131 61 71 chr4 182024477 182024617 -2264045 + LTR56 LTR ERV1 333 437 0 665 176 8 8 chr4 182024628 182024747 -2263915 - MER4D LTR ERV1 -10 893 775 732 235 78 9 chr4 182024947 182025207 -2263455 - MER4D LTR ERV1 -66 765 329 1284 186 20 4 chr4 182025320 182025332 -2263330 - MER49 LTR ERV1 -667 256 246 2438 92 0 0 chr4 182025332 182025636 -2263026 - AluY SINE Alu -7 304 1 1284 186 20 4 chr4 182025636 182025871 -2262791 - MER49 LTR ERV1 -677 246 5 1828 159 3 20 chr4 182026703 182027004 -2261658 + AluJo SINE Alu 6 301 -11 1322 231 41 28 chr4 182027809 182028172 -2260490 - MER39 LTR ERV1 0 707 340 650 224 19 78 chr4 182028194 182028399 -2260263 - MER39 LTR ERV1 -481 226 34 507 243 7 22 chr4 182028529 182028665 -2259997 + MER31B LTR ERV1 1 134 -332 923 284 123 39 chr4 182028736 182028834 -2259828 + MER34 LTR ERV1 101 189 -353 2263 107 3 0 chr4 182028834 182029125 -2259537 + AluSp SINE Alu 1 292 -21 923 284 123 39 chr4 182029125 182029434 -2259228 + MER34 LTR ERV1 189 542 0 788 230 58 47 chr4 182029451 182029721 -2258941 + MER31B LTR ERV1 193 543 0 523 263 30 0 chr4 182029723 182029856 -2258806 + MER117 DNA MER1_type 1 137 -60 5465 73 1 11 chr4 182031178 182031879 -2256783 + THE1B-int LTR MaLR 887 1580 0 2698 106 8 22 chr4 182031879 182032248 -2256414 + THE1B LTR MaLR 1 364 0 3841 149 18 36 chr4 182032248 182032519 -2256143 + L1MA4A LINE L1 5404 5678 -625 2491 78 0 0 chr4 182032519 182032825 -2255837 + AluY SINE Alu 1 306 -5 3841 149 18 36 chr4 182032825 182032944 -2255718 + L1MA4A LINE L1 5678 5798 -505 2213 79 7 0 chr4 182032944 182033247 -2255415 + AluSx SINE Alu 1 305 0 3841 149 18 36 chr4 182033247 182033585 -2255077 + L1MA4A LINE L1 5798 6121 -182 390 248 0 10 chr4 182033587 182033692 -2254970 + L1MA4A LINE L1 6056 6274 -2 243 0 0 0 chr4 182034254 182034281 -2254381 + (T)n Simple_repeat Simple_repeat 1 27 0 260 294 83 18 chr4 182034546 182034655 -2254007 - MLT1J2 LTR MaLR -231 219 104 1123 271 95 42 chr4 182035499 182035938 -2252724 - Charlie7 DNA MER1_type -8 2604 2190 13506 24 2 0 chr4 182035938 182038204 -2250458 + L1PA4 LINE L1 3877 6149 -6 180 0 0 0 chr4 182038212 182038232 -2250430 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1123 271 95 42 chr4 182038232 182038562 -2250100 - Charlie7 DNA MER1_type -428 2184 1785 1497 210 74 3 chr4 182038568 182038920 -2249742 + L1MB3 LINE L1 5799 6175 -8 266 265 0 0 chr4 182038920 182038988 -2249674 - Charlie7 DNA MER1_type -823 1789 1722 902 209 11 6 chr4 182039020 182039202 -2249460 + MER5A DNA MER1_type 2 184 -5 862 249 155 46 chr4 182039207 182039600 -2249062 - Charlie7 DNA MER1_type -911 1701 1266 1566 241 28 73 chr4 182039606 182040279 -2248383 + L1ME3 LINE L1 4488 5130 -1016 1217 213 197 48 chr4 182040313 182040721 -2247941 + L1ME3 LINE L1 5542 6046 -116 1996 160 74 63 chr4 182040721 182041183 -2247479 + MLT1C LTR MaLR 1 467 0 1217 213 197 48 chr4 182041183 182041296 -2247366 + L1ME3 LINE L1 6046 6141 -21 22 0 0 0 chr4 182041741 182041763 -2246899 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 182042163 182042184 -2246478 + AT_rich Low_complexity Low_complexity 1 21 0 324 0 0 0 chr4 182042635 182042671 -2245991 + (T)n Simple_repeat Simple_repeat 1 36 0 216 0 0 0 chr4 182043344 182043368 -2245294 + (CTG)n Simple_repeat Simple_repeat 3 26 0 446 317 49 58 chr4 182044205 182044523 -2244139 + L2 LINE L2 2763 3081 -191 276 309 0 0 chr4 182044550 182044618 -2244044 + L2 LINE L2 3231 3298 -15 1874 177 12 17 chr4 182044792 182045137 -2243525 + MLT2C2 LTR ERVL 1 343 -121 33 0 0 0 chr4 182045188 182045221 -2243441 + AT_rich Low_complexity Low_complexity 1 33 0 517 167 186 0 chr4 182045235 182045337 -2243325 - FLAM_A SINE Alu -12 121 1 7191 173 23 4 chr4 182045344 182047586 -2241076 - L1PA16 LINE L1 -1 6165 3882 255 202 0 0 chr4 182047713 182047797 -2240865 + (TA)n Simple_repeat Simple_repeat 1 84 0 15834 192 44 10 chr4 182047831 182048194 -2240468 - L1PB1 LINE L1 0 6867 6518 213 94 0 0 chr4 182048194 182048226 -2240436 + (TA)n Simple_repeat Simple_repeat 2 33 0 15834 192 44 10 chr4 182048226 182054321 -2234341 - L1PB1 LINE L1 -349 6518 6 1407 232 84 72 chr4 182055018 182055352 -2233310 - L1MC5 LINE L1 -103 7858 7530 2206 102 3 3 chr4 182055352 182055646 -2233016 + AluSc SINE Alu 6 299 -10 1407 232 84 72 chr4 182055646 182056187 -2232475 - L1MC5 LINE L1 -431 7530 6972 226 0 29 29 chr4 182056187 182056222 -2232440 + (TG)n Simple_repeat Simple_repeat 2 36 0 1359 158 117 15 chr4 182056919 182057185 -2231477 + AluSg SINE Alu 11 303 -7 2238 59 7 0 chr4 182057516 182057787 -2230875 + L1PA13 LINE L1 5887 6159 -4 399 41 0 0 chr4 182057937 182057986 -2230676 + (TG)n Simple_repeat Simple_repeat 2 50 0 225 253 25 13 chr4 182058473 182058552 -2230110 + L1ME3A LINE L1 3525 3604 -2542 1338 252 121 35 chr4 182058582 182059185 -2229477 + L1ME3A LINE L1 3686 4340 -1806 1327 282 80 43 chr4 182059218 182059619 -2229043 + L1ME3A LINE L1 4466 4907 -1239 1740 196 0 7 chr4 182059619 182059925 -2228737 - AluJb SINE Alu -8 304 1 1327 282 80 43 chr4 182059925 182060247 -2228415 + L1ME3A LINE L1 4907 5216 -930 1028 295 75 8 chr4 182060304 182060695 -2227967 + L1ME3A LINE L1 5435 5849 -321 347 300 91 58 chr4 182060701 182061031 -2227631 - L2 LINE L2 -410 2904 2564 2312 96 3 0 chr4 182061146 182061438 -2227224 + AluSp SINE Alu 1 293 -20 477 266 8 23 chr4 182062716 182062844 -2225818 + L2 LINE L2 3169 3294 -19 424 267 94 39 chr4 182062846 182063026 -2225636 + MLT1I LTR MaLR 1 190 -219 415 264 9 19 chr4 182064164 182064270 -2224392 + MLT1I LTR MaLR 142 246 -163 442 324 72 19 chr4 182064273 182064535 -2224127 + L1ME3 LINE L1 5674 5949 -221 6112 47 7 14 chr4 182064728 182065457 -2223205 - L1PA7 LINE L1 -3 6151 5428 2225 92 0 0 chr4 182065607 182065946 -2222716 - AluSg SINE Alu 0 339 1 22 70 0 0 chr4 182066753 182066796 -2221866 + AT_rich Low_complexity Low_complexity 1 43 0 397 239 22 0 chr4 182066811 182066903 -2221759 - L1MC5 LINE L1 -75 7886 7793 932 262 29 8 chr4 182067377 182067621 -2221041 + MIR SINE MIR 8 256 -6 818 199 120 45 chr4 182068643 182069032 -2219630 + LTR54B LTR ERV1 46 498 0 25 31 0 0 chr4 182070017 182070049 -2218613 + AT_rich Low_complexity Low_complexity 1 32 0 1667 291 154 19 chr4 182070068 182071011 -2217651 - L2 LINE L2 -1403 1911 842 2484 67 67 21 chr4 182071026 182071355 -2217307 - LTR14A LTR ERVK 0 344 1 8825 53 11 0 chr4 182071550 182072546 -2216116 - LTR13 LTR ERVK 0 1007 1 1438 182 82 71 chr4 182072821 182073201 -2215461 - MLT1B LTR MaLR -3 387 4 1584 189 43 58 chr4 182074061 182074457 -2214205 + MLT1B LTR MaLR 1 390 0 1417 69 3 6 chr4 182075502 182075818 -2212844 + HERVL66 LTR ERVL 3928 4329 0 4421 79 42 55 chr4 182075818 182076436 -2212226 + LTR66 LTR ERVL 1 610 0 1052 130 0 0 chr4 182076436 182076582 -2212080 - AluSq/x SINE Alu -167 146 1 682 272 53 69 chr4 182076586 182077208 -2211454 - L1MC4 LINE L1 -610 7432 6815 1798 176 205 2 chr4 182077427 182077847 -2210815 - MLT1D LTR MaLR 0 505 1 324 266 88 78 chr4 182078079 182078271 -2210391 - L1ME1 LINE L1 -22 6144 5951 222 37 0 0 chr4 182078401 182078428 -2210234 + (TA)n Simple_repeat Simple_repeat 2 28 0 834 138 0 15 chr4 182078428 182078558 -2210104 - AluSg/x SINE Alu -14 298 171 726 318 68 28 chr4 182078617 182079148 -2209514 - HAL1b LINE L1 -514 834 283 334 299 119 17 chr4 182079273 182079450 -2209212 - HAL1b LINE L1 -1101 247 53 1479 226 43 65 chr4 182079681 182080097 -2208565 + MLT1C LTR MaLR 1 407 -60 2265 97 3 3 chr4 182081588 182081888 -2206774 + AluY SINE Alu 1 300 -11 416 264 33 8 chr4 182082035 182082156 -2206506 - MER94 DNA DNA 0 134 11 21 0 0 0 chr4 182082315 182082336 -2206326 + AT_rich Low_complexity Low_complexity 1 21 0 1758 97 0 0 chr4 182083904 182084130 -2204532 - AluSx SINE Alu -81 231 6 239 133 4 3 chr4 182084344 182084578 -2204084 + AluJb SINE Alu 1 295 -7 1647 90 36 5 chr4 182084919 182085142 -2203520 + MER30 DNA MER1_type 1 230 0 2204 108 0 3 chr4 182085167 182085473 -2203189 - AluSc SINE Alu -4 305 1 1353 176 4 9 chr4 182086217 182086444 -2202218 + AluJo SINE Alu 6 231 -81 268 346 44 16 chr4 182087332 182087514 -2201148 - MIR SINE MIR -73 189 3 234 256 49 37 chr4 182087992 182088074 -2200588 + L2 LINE L2 3182 3264 -8 256 255 143 10 chr4 182088748 182088846 -2199816 - MLT1J2 LTR MaLR -308 142 32 2355 109 0 0 chr4 182088924 182089235 -2199427 - AluSx SINE Alu -1 311 1 21 36 0 0 chr4 182090587 182090615 -2198047 + AT_rich Low_complexity Low_complexity 1 28 0 2336 99 0 3 chr4 182090797 182091110 -2197552 + AluSx SINE Alu 1 312 0 2557 58 0 0 chr4 182091608 182091916 -2196746 + AluY SINE Alu 1 308 -3 249 77 0 0 chr4 182091965 182092004 -2196658 + L1MA8 LINE L1 6249 6287 -4 1763 163 0 20 chr4 182092338 182092639 -2196023 - AluJo SINE Alu -17 295 1 1555 185 76 12 chr4 182093285 182093626 -2195036 + MLT1A1 LTR MaLR 1 363 -2 24 32 0 0 chr4 182094152 182094183 -2194479 + AT_rich Low_complexity Low_complexity 1 31 0 756 281 66 30 chr4 182095278 182095580 -2193082 + HAL1 LINE L1 16 328 -2179 1287 86 38 11 chr4 182095610 182095796 -2192866 - AluSg/x SINE Alu -14 296 106 964 261 112 73 chr4 182095969 182096704 -2191958 + HAL1 LINE L1 499 1261 -1246 * 4703 160 17 25 chr4 182096694 182097618 -2191044 + L1 LINE L1 4356 5272 -874 186 175 75 0 chr4 182097840 182097851 -2190811 - MER5B DNA MER1_type -119 59 50 2524 58 0 0 chr4 182097851 182098159 -2190503 - AluY SINE Alu -3 308 1 186 175 75 0 chr4 182098159 182098187 -2190475 - MER5B DNA MER1_type -128 50 17 335 314 38 25 chr4 182098193 182098352 -2190310 - L2 LINE L2 -1142 2172 2012 11309 128 54 19 chr4 182098452 182100309 -2188353 - Tigger1 DNA MER2_type -494 1924 2 7365 215 45 47 chr4 182100316 182102024 -2186638 + L1MD1 LINE L1 368 2077 -4463 2063 139 0 10 chr4 182102024 182102325 -2186337 + AluSx SINE Alu 1 298 -14 7365 215 45 47 chr4 182102325 182102398 -2186264 + L1MD1 LINE L1 2077 2149 -4391 2098 139 0 22 chr4 182102398 182102714 -2185948 + AluSg SINE Alu 1 309 -1 7365 215 45 47 chr4 182102714 182103603 -2185059 + L1MD1 LINE L1 2149 3118 -3422 1993 254 45 36 chr4 182103760 182104445 -2184217 + L1MD1 LINE L1 3465 4161 -2379 2196 108 0 25 chr4 182104445 182104759 -2183903 + AluSx SINE Alu 1 306 -6 1993 254 45 36 chr4 182104759 182104952 -2183710 + L1MD1 LINE L1 4161 4351 -2189 1011 261 14 14 chr4 182106203 182106486 -2182176 + L1MD1 LINE L1 4375 4657 -1883 694 235 62 18 chr4 182106514 182106786 -2181876 - L1M4 LINE L1 -896 5250 4967 4333 199 63 18 chr4 182106811 182107994 -2180668 + L1MD1 LINE L1 4702 6046 -590 282 29 0 0 chr4 182107994 182108029 -2180633 + (CA)n Simple_repeat Simple_repeat 2 36 0 4333 199 63 18 chr4 182108029 182108649 -2180013 + L1MD1 LINE L1 6046 6636 0 726 229 19 13 chr4 182108831 182108988 -2179674 - AluJ SINE Alu -13 299 142 1553 99 5 5 chr4 182108988 182109210 -2179452 - pTR5 LTR ERV1 -2046 392 171 350 245 10 0 chr4 182109212 182109310 -2179352 - LTR30 LTR ERV1 -80 642 544 3740 142 72 40 chr4 182109314 182110204 -2178458 - pTR5 LTR ERV1 -418 2020 770 507 127 100 55 chr4 182110204 182110314 -2178348 - AluJ SINE Alu -146 166 52 197 308 133 26 chr4 182110340 182110535 -2178127 - MIR SINE MIR -1 261 46 2067 142 3 0 chr4 182110750 182111059 -2177603 - AluSg SINE Alu 0 310 1 201 129 0 0 chr4 182111374 182111405 -2177257 + (TG)n Simple_repeat Simple_repeat 2 32 0 244 313 24 12 chr4 182112595 182112678 -2175984 + L1ME3 LINE L1 561 644 -5475 379 291 128 51 chr4 182112803 182113569 -2175093 + L1ME3 LINE L1 4381 5087 -1058 2364 99 3 0 chr4 182113569 182113881 -2174781 + AluSq SINE Alu 1 313 0 379 291 128 51 chr4 182113881 182114554 -2174108 + L1ME3 LINE L1 5087 5961 -184 22 56 0 0 chr4 182114756 182114792 -2173870 + AT_rich Low_complexity Low_complexity 1 36 0 338 303 28 9 chr4 182114900 182115009 -2173653 + MIR SINE MIR 36 146 -62 291 315 72 35 chr4 182115352 182115551 -2173111 + MIR3 SINE MIR 1 208 0 215 290 50 40 chr4 182115770 182115870 -2172792 - L3 LINE CR1 -103 1474 1374 4867 181 56 74 chr4 182116089 182116452 -2172210 - L1MC2 LINE L1 -2 6622 6254 2378 88 0 7 chr4 182116452 182116749 -2171913 - AluSp SINE Alu -18 295 1 4867 181 56 74 chr4 182116749 182116857 -2171805 - L1MC2 LINE L1 -370 6254 6146 2256 102 0 0 chr4 182116857 182117152 -2171510 - AluSg SINE Alu 0 310 16 4867 181 56 74 chr4 182117152 182117733 -2170929 - L1MC2 LINE L1 -478 6146 5556 2092 94 0 4 chr4 182117733 182118008 -2170654 + AluY SINE Alu 24 297 -14 4867 181 56 74 chr4 182118008 182118701 -2169961 - L1MC2 LINE L1 -1068 5556 4920 2013 224 57 20 chr4 182118698 182119193 -2169469 - L1MC2 LINE L1 -5913 513 1 * 21 0 0 0 chr4 182119224 182119245 -2169417 + AT_rich Low_complexity Low_complexity 1 21 0 241 246 0 29 chr4 182119385 182119454 -2169208 - L1ME4a LINE L1 -82 6039 5973 219 298 0 0 chr4 182119465 182119522 -2169140 + CT-rich Low_complexity Low_complexity 4 60 0 215 295 18 18 chr4 182119549 182119661 -2169001 + (TATATG)n Simple_repeat Simple_repeat 2 113 0 369 0 0 0 chr4 182119674 182119715 -2168947 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 376 186 57 7 chr4 182120017 182120299 -2168363 + (TA)n Simple_repeat Simple_repeat 1 296 0 1717 163 21 14 chr4 182120299 182120588 -2168074 - AluJo SINE Alu -21 291 1 2133 109 7 0 chr4 182121430 182121724 -2166938 - AluSp SINE Alu -17 296 1 413 340 86 10 chr4 182122049 182122258 -2166404 + MIR SINE MIR 36 260 -2 602 184 6 31 chr4 182122361 182122524 -2166138 + GA-rich Low_complexity Low_complexity 2 160 0 1471 171 72 48 chr4 182123131 182123337 -2165325 + L1MC/D LINE L1 4978 5178 -1037 5025 101 5 3 chr4 182123337 182124010 -2164652 + L1PA15 LINE L1 5490 6163 -2 1471 171 72 48 chr4 182124010 182124307 -2164355 + L1MC/D LINE L1 5178 5472 -743 2260 103 0 0 chr4 182124307 182124607 -2164055 - AluSq SINE Alu -13 300 1 562 308 72 23 chr4 182124825 182125046 -2163616 - MIR SINE MIR -18 244 13 737 244 87 0 chr4 182125195 182125367 -2163295 + MER5A DNA MER1_type 3 189 0 329 267 139 32 chr4 182125533 182125888 -2162774 + LTR16A LTR ERVL 19 445 -5 186 118 0 0 chr4 182127098 182127132 -2161530 + (TG)n Simple_repeat Simple_repeat 2 35 0 755 218 106 6 chr4 182127428 182127607 -2161055 - MER3 DNA MER1_type -12 197 1 255 303 157 61 chr4 182128013 182128418 -2160244 - L2 LINE L2 -10 3262 2830 198 224 35 0 chr4 182129726 182129811 -2158851 + (TA)n Simple_repeat Simple_repeat 2 89 0 958 259 23 0 chr4 182129923 182130139 -2158523 - MER58A DNA MER1_type -2 222 2 309 281 78 8 chr4 182130143 182130271 -2158391 + MIR SINE MIR 12 148 -114 353 152 15 0 chr4 182130271 182130337 -2158325 + L1M4 LINE L1 4672 4738 -1408 6681 205 69 39 chr4 182130715 182133415 -2155247 + L1MB7 LINE L1 3174 5953 -225 561 199 64 13 chr4 182133416 182133572 -2155090 + L1MB7 LINE L1 6019 6182 -2 1083 211 150 11 chr4 182133574 182133928 -2154734 - L1MD3 LINE L1 -486 7509 6891 2083 109 14 0 chr4 182134356 182134778 -2153884 + AluSc SINE Alu 1 426 0 577 183 26 0 chr4 182134812 182134927 -2153735 + LTR47A LTR ERVL 335 452 0 234 170 27 27 chr4 182136353 182136465 -2152197 + (TG)n Simple_repeat Simple_repeat 2 113 0 400 192 35 37 chr4 182136476 182136807 -2151855 + (TG)n Simple_repeat Simple_repeat 1 330 0 188 285 181 21 chr4 182138128 182138272 -2150390 + MIR3 SINE MIR 30 196 -12 645 177 8 15 chr4 182138463 182138593 -2150069 - FLAM_A SINE Alu -1 141 13 1590 107 0 23 chr4 182138748 182138963 -2149699 + AluSg/x SINE Alu 81 290 -20 1119 189 37 84 chr4 182139225 182139521 -2149141 - L1PA16 LINE L1 0 6166 5885 2249 85 4 4 chr4 182139528 182139859 -2148803 - AluSc SINE Alu 0 331 1 330 300 44 40 chr4 182140628 182140888 -2147774 + MLT1C LTR MaLR 131 467 0 298 45 0 0 chr4 182140982 182141026 -2147636 - AluY SINE Alu 0 302 259 1925 54 0 0 chr4 182141026 182141247 -2147415 - AluY SINE Alu -90 221 1 381 58 0 0 chr4 182141284 182141336 -2147326 + (CA)n Simple_repeat Simple_repeat 2 53 0 2154 79 9 67 chr4 182141752 182142080 -2146582 - AluSc SINE Alu 0 309 1 750 234 91 47 chr4 182143334 182143679 -2144983 + L1ME LINE L1 5402 5795 -371 349 264 56 28 chr4 182144453 182144597 -2144065 + L2 LINE L2 3151 3298 -15 2359 108 0 0 chr4 182144602 182144899 -2143763 + AluSg SINE Alu 1 297 -13 26 0 0 0 chr4 182145408 182145434 -2143228 + AT_rich Low_complexity Low_complexity 1 26 0 2384 79 0 25 chr4 182146370 182146686 -2141976 + AluY SINE Alu 1 308 -3 233 164 0 18 chr4 182146934 182146989 -2141673 + (CATATA)n Simple_repeat Simple_repeat 1 54 0 519 198 43 68 chr4 182146989 182147151 -2141511 - AluSg/x SINE Alu -23 287 130 501 64 9 46 chr4 182148250 182148359 -2140303 + (CACAC)n Simple_repeat Simple_repeat 1 105 0 185 300 129 0 chr4 182148518 182148588 -2140074 + MIR SINE MIR 174 252 -10 21 0 0 0 chr4 182148687 182148708 -2139954 + AT_rich Low_complexity Low_complexity 1 21 0 285 231 26 0 chr4 182151023 182151101 -2137561 - MER116 DNA Mariner 0 80 1 397 349 20 0 chr4 182151479 182151573 -2137089 + MIR SINE MIR 107 207 -55 705 24 0 0 chr4 182151573 182151656 -2137006 + (TC)n Simple_repeat Simple_repeat 2 84 0 397 349 20 0 chr4 182151656 182151707 -2136955 + MIR SINE MIR 207 255 -7 39 38 0 0 chr4 182152477 182152530 -2136132 + AT_rich Low_complexity Low_complexity 1 53 0 229 114 114 0 chr4 182152684 182152728 -2135934 - L1MC3 LINE L1 -1 7784 7736 413 171 12 0 chr4 182152738 182152820 -2135842 - L1MC3 LINE L1 -118 7667 7585 386 193 123 53 chr4 182152903 182153132 -2135530 - MLT2D LTR ERVL -40 373 102 3062 196 84 42 chr4 182153143 182153643 -2135019 - L1MC3 LINE L1 -207 7578 7100 195 42 0 0 chr4 182153643 182153667 -2134995 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 3062 196 84 42 chr4 182153667 182153955 -2134707 - L1MC3 LINE L1 -685 7100 6738 1744 160 20 105 chr4 182153955 182154354 -2134308 + MLT1A1 LTR MaLR 1 365 0 3062 196 84 42 chr4 182154354 182154454 -2134208 - L1MC3 LINE L1 -1047 6738 6644 196 348 80 7 chr4 182154705 182154843 -2133819 - MIR SINE MIR -74 188 41 1136 194 128 29 chr4 182154934 182155207 -2133455 - AluJb SINE Alu -2 300 1 634 167 31 135 chr4 182155446 182155638 -2133024 - MLT2B1 LTR ERVL 0 520 349 1595 83 58 8 chr4 182155638 182155879 -2132783 - L1P4 LINE L1 -662 5506 5254 990 151 91 0 chr4 182155895 182156127 -2132535 + Charlie5 DNA MER1_type 2372 2624 0 1218 239 166 31 chr4 182157088 182157577 -2131085 + MLT1H1 LTR MaLR 1 555 0 360 230 30 67 chr4 182157595 182157730 -2130932 + MIR SINE MIR 77 206 -56 802 168 0 7 chr4 182157786 182157923 -2130739 - FLAM_C SINE Alu -2 141 6 227 231 0 19 chr4 182158026 182158078 -2130584 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 2017 90 61 4 chr4 182158179 182158457 -2130205 - AluSx SINE Alu -8 304 11 293 293 19 13 chr4 182159347 182159504 -2129158 + G-rich Low_complexity Low_complexity 1 158 0 25 31 0 0 chr4 182159509 182159541 -2129121 + GC_rich Low_complexity Low_complexity 1 32 0 209 119 0 24 chr4 182159558 182159600 -2129062 + (CGGGGG)n Simple_repeat Simple_repeat 6 46 0 22 0 0 0 chr4 182159612 182159634 -2129028 + GC_rich Low_complexity Low_complexity 1 22 0 1707 176 0 4 chr4 182161743 182162022 -2126640 + AluJb SINE Alu 7 284 -28 224 253 152 13 chr4 182162107 182162186 -2126476 - MIR SINE MIR -68 140 51 1997 84 0 0 chr4 182162681 182162918 -2125744 + AluSq SINE Alu 1 237 -76 297 0 0 0 chr4 182163636 182163669 -2124993 + (TG)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr4 182164085 182164106 -2124556 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr4 182164996 182165016 -2123646 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2816 20 0 0 chr4 182165050 182165355 -2123307 - AluY SINE Alu -6 305 1 1961 129 52 0 chr4 182165355 182165641 -2123021 - AluSg SINE Alu -9 301 1 2450 83 0 6 chr4 182167169 182167481 -2121181 - AluSg SINE Alu 0 310 1 282 342 77 0 chr4 182167647 182167802 -2120860 + MIR SINE MIR 42 208 -54 736 221 145 24 chr4 182169418 182169707 -2118955 - MER5C DNA MER1_type 0 324 1 403 278 68 71 chr4 182170818 182171070 -2117592 - MIR SINE MIR -5 257 7 962 101 0 29 chr4 182171260 182171398 -2117264 + AluSc SINE Alu 162 295 -14 43365 34 22 1 chr4 182171573 182177597 -2111065 + L1PA2 LINE L1 1 6154 -1 185 262 0 0 chr4 182177821 182177863 -2110799 - L2 LINE L2 -1 3271 3230 264 367 56 28 chr4 182178348 182178528 -2110134 - MIR SINE MIR -64 198 14 2611 44 0 0 chr4 182178846 182179142 -2109520 + AluY SINE Alu 1 296 -15 1627 157 35 35 chr4 182180274 182180561 -2108101 + AluJb SINE Alu 1 287 -25 2466 64 0 16 chr4 182181016 182181327 -2107335 - AluY SINE Alu -5 306 1 21 36 0 0 chr4 182182510 182182538 -2106124 + GC_rich Low_complexity Low_complexity 1 28 0 39 38 0 0 chr4 182183200 182183253 -2105409 + GC_rich Low_complexity Low_complexity 1 53 0 1491 105 90 47 chr4 182183951 182184228 -2104434 + AluJo SINE Alu 1 289 -23 2525 43 13 3 chr4 182185448 182185747 -2102915 + AluY SINE Alu 1 302 -9 1939 103 0 0 chr4 182186023 182186322 -2102340 + AluSp SINE Alu 33 331 0 1404 227 106 19 chr4 182186419 182186833 -2101829 + MLT1C LTR MaLR 10 459 -8 2122 87 0 0 chr4 182187203 182187478 -2101184 - AluY SINE Alu -36 275 1 235 300 62 46 chr4 182187916 182188046 -2100616 - MIR SINE MIR -2 260 129 22 0 0 0 chr4 182189303 182189325 -2099337 + AT_rich Low_complexity Low_complexity 1 22 0 2390 72 0 13 chr4 182189594 182189900 -2098762 - AluY SINE Alu -9 302 1 1840 213 28 19 chr4 182189990 182190460 -2098202 + L1 LINE L1 2738 3211 -2935 709 68 0 0 chr4 182191027 182191115 -2097547 + AluS SINE Alu 2 89 -223 29 47 0 0 chr4 182191624 182191667 -2096995 + AT_rich Low_complexity Low_complexity 1 43 0 621 265 103 59 chr4 182192321 182192827 -2095835 + L1MC4 LINE L1 7485 8012 -30 740 268 95 54 chr4 182193562 182194006 -2094656 + LTR40b LTR ERVL 1 462 0 7177 41 1 1 chr4 182194438 182195295 -2093367 - L1PA5 LINE L1 0 6154 5298 268 267 11 11 chr4 182195786 182195876 -2092786 + MIR SINE MIR 165 254 -8 2497 203 38 41 chr4 182196492 182197048 -2091614 + MLT2B3 LTR ERVL 1 554 0 433 303 97 0 chr4 182197296 182197481 -2091181 - MER63A DNA MER1_type -7 203 1 1995 143 0 7 chr4 182197862 182198163 -2090499 - AluSq SINE Alu -14 299 1 2143 130 7 0 chr4 182198163 182198464 -2090198 - AluSq SINE Alu -10 303 1 21 0 0 0 chr4 182198639 182198660 -2090002 + AT_rich Low_complexity Low_complexity 1 21 0 579 238 5 0 chr4 182198949 182199399 -2089263 + (TG)n Simple_repeat Simple_repeat 1 452 0 480 270 45 38 chr4 182199924 182200191 -2088471 + L1M4 LINE L1 2216 2484 -3662 279 0 0 0 chr4 182200439 182200470 -2088192 + (TC)n Simple_repeat Simple_repeat 2 32 0 198 0 0 0 chr4 182200469 182200491 -2088171 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 1499 156 74 15 chr4 182200565 182200834 -2087828 - AluJb SINE Alu -27 285 1 720 268 66 60 chr4 182200945 182201089 -2087573 + L1M4 LINE L1 4747 4889 -1257 1110 196 59 95 chr4 182201089 182201241 -2087421 + MLT1A2 LTR MaLR 1 157 -217 2267 113 0 0 chr4 182201241 182201534 -2087128 + AluSx SINE Alu 1 293 -19 1110 196 59 95 chr4 182201534 182201769 -2086893 + MLT1A2 LTR MaLR 157 374 0 720 268 66 60 chr4 182201769 182202061 -2086601 + L1M4 LINE L1 4889 5186 -960 287 133 0 0 chr4 182202408 182202453 -2086209 - LTR54 LTR ERV1 0 510 466 305 286 31 0 chr4 182202474 182202572 -2086090 + L1M4 LINE L1 4747 4847 -1299 390 162 9 124 chr4 182202616 182202643 -2086019 + MLT1A2 LTR MaLR 1 29 -345 2599 133 82 0 chr4 182202643 182203071 -2085591 - MER4C LTR ERV1 -2 463 1 390 162 9 124 chr4 182203071 182203148 -2085514 + MLT1A2 LTR MaLR 29 93 -281 312 222 148 69 chr4 182203146 182203362 -2085300 - HsTC2 DNA Tc2 -397 1501 1269 * 3347 170 55 23 chr4 182203366 182203842 -2084820 - L1MB4 LINE L1 -8 6172 5664 1792 166 3 3 chr4 182203842 182204131 -2084531 - AluJo SINE Alu -23 289 1 3347 170 55 23 chr4 182204131 182204359 -2084303 - L1MB4 LINE L1 -516 5664 5445 647 218 86 0 chr4 182205167 182205341 -2083321 + MER5A DNA MER1_type 1 189 0 2378 245 28 20 chr4 182205577 182206218 -2082444 + MER82 DNA MER2_type 8 653 0 2047 128 0 0 chr4 182207729 182208002 -2080660 - AluSx SINE Alu -29 283 11 2180 113 0 3 chr4 182208040 182208342 -2080320 + AluY SINE Alu 1 301 -10 488 115 0 11 chr4 182209904 182209991 -2078671 + (CA)n Simple_repeat Simple_repeat 2 87 0 1705 193 0 7 chr4 182210347 182210648 -2078014 - AluJo SINE Alu -13 299 1 222 37 0 0 chr4 182210663 182210690 -2077972 + (CA)n Simple_repeat Simple_repeat 2 28 0 633 217 46 0 chr4 182211510 182211662 -2077000 + MER5A DNA MER1_type 1 159 -30 390 147 0 0 chr4 182212046 182212114 -2076548 + (CA)n Simple_repeat Simple_repeat 2 69 0 346 188 79 30 chr4 182212169 182212270 -2076392 - MER5A DNA MER1_type -80 109 4 1935 148 26 19 chr4 182214162 182214472 -2074190 + AluJo SINE Alu 1 312 0 905 164 6 82 chr4 182215779 182215921 -2072741 + MER3 DNA MER1_type 6 86 -76 2364 78 3 3 chr4 182215921 182216216 -2072446 - AluSg SINE Alu -15 295 1 905 164 6 82 chr4 182216216 182216256 -2072406 + MER3 DNA MER1_type 86 127 -35 799 288 158 19 chr4 182216398 182216829 -2071833 + L2 LINE L2 2098 2588 -726 337 254 0 91 chr4 182216831 182216941 -2071721 + L2 LINE L2 3212 3311 -2 1668 185 3 3 chr4 182217220 182217522 -2071140 + AluJb SINE Alu 1 302 -10 2934 151 21 21 chr4 182217869 182218391 -2070271 + L1PB4 LINE L1 5622 6143 -13 27 0 0 0 chr4 182218401 182218428 -2070234 + AT_rich Low_complexity Low_complexity 1 27 0 2347 92 3 10 chr4 182218430 182218736 -2069926 + AluSx SINE Alu 1 304 -8 2459 75 0 13 chr4 182219804 182220110 -2068552 - AluSx SINE Alu -10 302 1 1764 163 0 0 chr4 182221589 182221859 -2066803 + AluJb SINE Alu 24 293 -19 231 311 0 66 chr4 182222466 182222572 -2066090 + MER58 DNA MER1_type 1 99 -242 350 192 58 67 chr4 182222584 182222688 -2065974 + MER58 DNA MER1_type 2318 2420 0 262 216 144 10 chr4 182222974 182223071 -2065591 + L1MC4 LINE L1 7810 7919 -123 28 61 0 0 chr4 182223151 182223200 -2065462 + AT_rich Low_complexity Low_complexity 1 49 0 1807 144 0 48 chr4 182224317 182224609 -2064053 + AluJo SINE Alu 5 282 -30 817 226 0 0 chr4 182224756 182224920 -2063742 + L1PB4 LINE L1 5993 6156 0 295 245 117 11 chr4 182224939 182225033 -2063629 + MER2 DNA MER2_type 226 329 -16 1217 253 64 69 chr4 182225101 182225541 -2063121 - L1M4 LINE L1 -1829 4317 3874 2994 161 28 17 chr4 182225541 182226083 -2062579 - L1MB3 LINE L1 -2 6181 5634 1217 253 64 69 chr4 182226083 182226335 -2062327 - L1M4 LINE L1 -2272 3874 3622 699 214 51 157 chr4 182226336 182226914 -2061748 - L1M4 LINE L1 -2951 3195 2682 1965 168 40 0 chr4 182226914 182227242 -2061420 + MER2 DNA MER2_type 4 344 0 699 214 51 157 chr4 182227242 182227269 -2061393 - L1M4 LINE L1 -3464 2682 2654 23 0 0 0 chr4 182229273 182229296 -2059366 + AT_rich Low_complexity Low_complexity 1 23 0 1871 99 10 79 chr4 182229723 182230110 -2058552 - AluSx SINE Alu 0 366 1 1501 181 50 4 chr4 182231325 182231602 -2057060 - AluJo SINE Alu -22 290 1 3343 136 20 88 chr4 182231875 182232514 -2056148 - MER4A LTR ERV1 -2 598 3 2552 143 62 17 chr4 182232694 182233164 -2055498 + L1MA4A LINE L1 5812 6302 -1 2582 54 0 13 chr4 182233241 182233556 -2055106 - AluY SINE Alu 0 311 1 1114 185 18 40 chr4 182233601 182233823 -2054839 - MER20 DNA MER1_type 0 219 3 334 328 74 0 chr4 182233916 182234038 -2054624 + MIR SINE MIR 20 150 -58 3392 103 97 12 chr4 182234985 182235471 -2053191 + MER1A DNA MER1_type 1 527 0 2233 85 4 0 chr4 182235732 182236013 -2052649 + AluY SINE Alu 1 282 -29 288 0 0 0 chr4 182236014 182236046 -2052616 + (CTA)n Simple_repeat Simple_repeat 1 32 0 1639 146 38 31 chr4 182236080 182236367 -2052295 - AluJb SINE Alu -23 289 1 691 172 16 16 chr4 182237391 182237513 -2051149 - AluJb SINE Alu -159 153 32 291 28 0 0 chr4 182237539 182237575 -2051087 + (CA)n Simple_repeat Simple_repeat 2 37 0 24 0 0 0 chr4 182237773 182237797 -2050865 + AT_rich Low_complexity Low_complexity 1 24 0 29 28 0 0 chr4 182238127 182238163 -2050499 + AT_rich Low_complexity Low_complexity 1 36 0 207 0 0 0 chr4 182238294 182238317 -2050345 + (CA)n Simple_repeat Simple_repeat 2 24 0 210 118 0 0 chr4 182238317 182238351 -2050311 + (GA)n Simple_repeat Simple_repeat 1 34 0 542 232 96 82 chr4 182239642 182239781 -2048881 - MIR SINE MIR -32 230 85 1638 145 0 24 chr4 182239781 182240036 -2048626 - AluJo SINE Alu -63 249 1 542 232 96 82 chr4 182240036 182240116 -2048546 - MIR SINE MIR -177 85 8 2208 100 10 0 chr4 182241182 182241471 -2047191 + AluSx SINE Alu 1 292 -20 32 0 0 0 chr4 182241471 182241503 -2047159 + AT_rich Low_complexity Low_complexity 1 32 0 517 300 76 14 chr4 182242141 182242351 -2046311 - MIR SINE MIR -11 251 29 222 235 7 24 chr4 182242552 182242856 -2045806 + (TGG)n Simple_repeat Simple_repeat 1 298 0 317 290 6 25 chr4 182243473 182243635 -2045027 + (TGG)n Simple_repeat Simple_repeat 1 159 0 4150 209 53 30 chr4 182246383 182247801 -2040861 + L1MB7 LINE L1 4558 6025 -159 2364 89 0 16 chr4 182247801 182248117 -2040545 - AluY SINE Alu 0 311 1 4150 209 53 30 chr4 182248117 182248264 -2040398 + L1MB7 LINE L1 6025 6167 -17 202 230 287 0 chr4 182248411 182248498 -2040164 - L3 LINE CR1 -662 915 804 2169 89 78 8 chr4 182248498 182248866 -2039796 + LTR7 LTR ERV1 1 450 0 14491 120 5 40 chr4 182248866 182252091 -2036571 + HERVH LTR ERV1 1 3601 -4112 7243 142 12 9 chr4 182252082 182253323 -2035339 + HERVH LTR ERV1 3840 5364 -1290 * 2860 104 7 11 chr4 182253327 182253760 -2034902 + HERVH LTR ERV1 7283 7713 0 2144 79 72 9 chr4 182253760 182254127 -2034535 + LTR7 LTR ERV1 1 450 0 186 359 16 0 chr4 182254144 182254208 -2034454 - L3 LINE CR1 -789 788 724 1921 195 86 51 chr4 182255668 182256156 -2032506 - MLT1D LTR MaLR 0 505 1 909 202 5 25 chr4 182256682 182256880 -2031782 + L1PB4 LINE L1 5961 6154 -2 183 303 230 11 chr4 182256890 182257068 -2031594 - L2 LINE L2 -140 3173 2957 22 35 0 0 chr4 182257121 182257150 -2031512 + AT_rich Low_complexity Low_complexity 1 29 0 2274 96 0 20 chr4 182257154 182257455 -2031207 + AluSq SINE Alu 1 295 -18 1152 186 69 45 chr4 182257474 182257721 -2030941 + AluJo SINE Alu 30 282 -30 359 318 52 7 chr4 182260314 182260468 -2028194 + MIR SINE MIR 92 252 -10 242 29 29 0 chr4 182260677 182260712 -2027950 + (CA)n Simple_repeat Simple_repeat 2 37 0 1921 195 86 51 chr4 182262943 182263431 -2025231 - MLT1D LTR MaLR 0 505 1 879 207 5 25 chr4 182263957 182264155 -2024507 + L1PB4 LINE L1 5961 6154 -2 183 303 230 11 chr4 182264165 182264343 -2024319 - L2 LINE L2 -140 3173 2957 27 57 0 29 chr4 182264396 182264429 -2024233 + AT_rich Low_complexity Low_complexity 1 33 -35 2173 108 0 0 chr4 182264429 182264715 -2023947 + AluSg SINE Alu 1 286 -24 27 57 0 29 chr4 182264715 182264751 -2023911 + AT_rich Low_complexity Low_complexity 33 68 0 676 195 0 0 chr4 182265448 182265571 -2023091 + L1PB4 LINE L1 6032 6154 -2 183 303 230 11 chr4 182265581 182265759 -2022903 - L2 LINE L2 -140 3173 2957 22 35 0 0 chr4 182265812 182265841 -2022821 + AT_rich Low_complexity Low_complexity 1 29 0 2236 93 0 0 chr4 182265845 182266162 -2022500 + AluSg SINE Alu 1 317 0 2632 17 10 0 chr4 182267108 182267403 -2021259 - AluY SINE Alu -13 298 1 1200 181 18 49 chr4 182268620 182268846 -2019816 - MER20 DNA MER1_type 0 219 1 2208 94 0 0 chr4 182270042 182270319 -2018343 + AluSg SINE Alu 2 278 -32 224 220 20 0 chr4 182270381 182270431 -2018231 + (CA)n Simple_repeat Simple_repeat 2 52 0 357 281 74 15 chr4 182270730 182270865 -2017797 - MER5A DNA MER1_type -28 161 19 21 0 0 0 chr4 182271164 182271185 -2017477 + AT_rich Low_complexity Low_complexity 1 21 0 285 235 93 13 chr4 182271591 182271705 -2016957 - MIR SINE MIR -82 126 3 207 189 0 0 chr4 182272651 182272688 -2015974 + (ATG)n Simple_repeat Simple_repeat 2 38 0 328 292 110 67 chr4 182272824 182273033 -2015629 + L1ME LINE L1 5283 5500 -621 565 259 91 30 chr4 182273040 182273272 -2015390 - MLT1K LTR MaLR -17 571 326 231 304 29 65 chr4 182273366 182273504 -2015158 - MLT1K LTR MaLR -409 179 47 336 330 16 36 chr4 182273556 182273750 -2014912 + L1ME LINE L1 5507 5696 -425 2079 249 60 48 chr4 182275878 182276682 -2011980 + L1M3c LINE L1 473 1600 -5896 7191 234 69 38 chr4 182276684 182277520 -2011142 + L1M3c LINE L1 2023 2831 -4734 2314 92 0 32 chr4 182277520 182277834 -2010828 + AluY SINE Alu 1 304 -7 7191 234 69 38 chr4 182277834 182278066 -2010596 + L1M3c LINE L1 2831 3054 -4511 1733 145 100 56 chr4 182278066 182278425 -2010237 - THE1C LTR MaLR 0 375 1 9959 129 31 38 chr4 182278425 182280012 -2008650 - THE1C-int LTR MaLR 0 1580 4 1845 176 38 22 chr4 182280015 182280384 -2008278 - THE1C LTR MaLR 0 375 1 7191 234 69 38 chr4 182280384 182282695 -2005967 + L1M3c LINE L1 3055 5331 -2234 809 181 12 6 chr4 182282703 182282863 -2005799 + L1MA9 LINE L1 5922 6082 -230 8442 84 4 8 chr4 182282863 182283964 -2004698 + HERVL-A2 LTR ERVL 4559 5654 0 2126 160 42 29 chr4 182283964 182284511 -2004151 + MLT2A2 LTR ERVL 1 554 0 1053 171 97 0 chr4 182284511 182284587 -2004075 + L1MA9 LINE L1 6075 6142 -170 291 54 0 0 chr4 182284587 182284624 -2004038 + (CA)n Simple_repeat Simple_repeat 1 37 0 1053 171 97 0 chr4 182284624 182284764 -2003898 + L1MA9 LINE L1 6142 6312 0 217 164 66 49 chr4 182285023 182285084 -2003578 - L3 LINE CR1 -13 1564 1503 1097 230 9 0 chr4 182285097 182285310 -2003352 + MER58A DNA MER1_type 4 218 -6 21 0 0 0 chr4 182285417 182285438 -2003224 + AT_rich Low_complexity Low_complexity 1 21 0 299 304 81 14 chr4 182285488 182285636 -2003026 - L3 LINE CR1 -201 1376 1219 248 0 31 0 chr4 182285939 182285971 -2002691 + (CAA)n Simple_repeat Simple_repeat 2 34 0 878 240 116 50 chr4 182286278 182286640 -2002022 + MLT1E2 LTR MaLR 64 449 -177 327 313 74 40 chr4 182286677 182286974 -2001688 + L2 LINE L2 2967 3273 -40 1016 177 52 16 chr4 182287463 182287695 -2000967 + AluJb SINE Alu 87 325 0 553 150 21 21 chr4 182287788 182287928 -2000734 + GA-rich Low_complexity Low_complexity 2 141 0 371 331 52 0 chr4 182291105 182291241 -1997421 + MIR3 SINE MIR 57 199 -9 471 35 0 0 chr4 182291532 182291589 -1997073 + (TG)n Simple_repeat Simple_repeat 2 58 0 2326 88 0 3 chr4 182291634 182291931 -1996731 + AluSc SINE Alu 1 296 -13 2321 104 0 16 chr4 182292107 182292424 -1996238 + AluSx SINE Alu 1 312 0 235 298 57 57 chr4 182292889 182293047 -1995615 + MER5A DNA MER1_type 31 188 -1 2189 143 74 3 chr4 182293424 182293788 -1994874 + MLT1B LTR MaLR 1 390 0 1477 216 20 0 chr4 182295318 182295623 -1993039 + L1MB5 LINE L1 5864 6174 0 101 0 0 0 chr4 182295657 182295758 -1992904 + AT_rich Low_complexity Low_complexity 1 101 0 2470 73 0 13 chr4 182295808 182296123 -1992539 - AluY SINE Alu 0 311 1 695 247 75 102 chr4 182296819 182297338 -1991324 + MLT1D LTR MaLR 1 505 0 393 345 29 29 chr4 182298518 182298727 -1989935 - MIR SINE MIR -25 237 29 329 356 0 0 chr4 182300066 182300181 -1988481 + (TG)n Simple_repeat Simple_repeat 2 116 0 229 157 0 57 chr4 182300194 182300264 -1988398 + (TATG)n Simple_repeat Simple_repeat 3 68 0 234 171 79 0 chr4 182300326 182300402 -1988260 + (CATG)n Simple_repeat Simple_repeat 3 84 0 492 263 0 0 chr4 182300410 182300589 -1988073 + (TG)n Simple_repeat Simple_repeat 2 180 0 279 253 0 0 chr4 182300600 182300695 -1987967 + (TG)n Simple_repeat Simple_repeat 2 96 0 281 311 174 24 chr4 182300764 182300931 -1987731 - MIR SINE MIR -23 239 48 208 393 47 0 chr4 182301043 182301150 -1987512 - MIR3 SINE MIR -51 157 46 525 287 59 80 chr4 182302543 182302930 -1985732 + L2 LINE L2 2934 3312 -1 203 282 127 27 chr4 182303022 182303132 -1985530 + L2 LINE L2 3192 3312 -1 372 395 19 25 chr4 182303744 182303901 -1984761 + L2 LINE L2 3115 3270 -2 844 130 8 0 chr4 182304045 182304176 -1984486 + L1MB3 LINE L1 6051 6182 -1 246 307 209 19 chr4 182304527 182304742 -1983920 - L3 LINE CR1 -65 1512 1257 270 299 212 34 chr4 182304813 182305077 -1983585 + L2 LINE L2 3002 3312 -1 252 259 144 44 chr4 182305193 182305513 -1983149 - L1ME4a LINE L1 -5 6116 5765 538 247 34 7 chr4 182308825 182308971 -1979691 + L1MD3 LINE L1 7829 7978 -17 201 256 171 0 chr4 182309072 182309154 -1979508 - MIR SINE MIR -165 97 2 209 308 39 48 chr4 182309497 182309601 -1979061 + L2 LINE L2 3160 3262 -10 200 329 43 0 chr4 182309629 182309699 -1978963 - MIR SINE MIR -36 226 154 185 274 145 0 chr4 182312929 182312991 -1975671 + MIR3 SINE MIR 86 156 -52 783 213 75 12 chr4 182312991 182313190 -1975472 + L1PA16 LINE L1 5959 6163 0 287 184 0 0 chr4 182314289 182314338 -1974324 - L1ME3A LINE L1 -251 5919 5871 635 259 35 26 chr4 182314458 182314903 -1973759 - L1ME4a LINE L1 -204 5986 5523 360 0 0 0 chr4 182314925 182314965 -1973697 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 1392 141 0 0 chr4 182314968 182315166 -1973496 - AluJb SINE Alu -29 283 86 1533 262 79 47 chr4 182315350 182315437 -1973225 - L1ME4a LINE L1 -873 5342 5259 1790 151 166 17 chr4 182315437 182315781 -1972881 - MSTD LTR MaLR 0 396 2 1533 262 79 47 chr4 182315781 182316322 -1972340 - L1ME4a LINE L1 -956 5259 4680 270 0 0 0 chr4 182316322 182316352 -1972310 + (CA)n Simple_repeat Simple_repeat 2 31 0 1533 262 79 47 chr4 182316352 182316528 -1972134 - L1ME4a LINE L1 -1535 4680 4511 1845 182 46 38 chr4 182316534 182316733 -1971929 + MLT2C2 LTR ERVL 1 206 -258 2268 110 3 0 chr4 182316733 182317032 -1971630 + AluSq SINE Alu 1 300 -13 1845 182 46 38 chr4 182317032 182317205 -1971457 + MLT2C2 LTR ERVL 206 376 -88 710 85 0 0 chr4 182317237 182317331 -1971331 + L1PA5 LINE L1 5 98 -6048 * 38071 53 1 3 chr4 182317329 182322867 -1965795 + L1PA5 LINE L1 623 6152 -2 756 257 105 77 chr4 182322993 182323775 -1964887 - L1ME4a LINE L1 -1712 4503 3700 975 181 0 18 chr4 182323792 182323958 -1964704 - FRAM SINE Alu -13 163 1 708 273 94 3 chr4 182323987 182324273 -1964389 - L1ME4a LINE L1 -2567 3648 3337 930 317 86 16 chr4 182324449 182325265 -1963397 - L1ME4a LINE L1 -4566 1830 958 264 122 0 0 chr4 182326291 182326332 -1962330 + (CA)n Simple_repeat Simple_repeat 2 42 0 2489 279 51 20 chr4 182326334 182327170 -1961492 + L2 LINE L2 1753 2614 -700 1084 302 134 30 chr4 182327170 182327703 -1960959 + L2 LINE L2 2720 3304 -9 21 36 0 0 chr4 182328026 182328054 -1960608 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 182328648 182328669 -1959993 + AT_rich Low_complexity Low_complexity 1 21 0 2640 75 32 3 chr4 182328821 182329167 -1959495 + L1PA13 LINE L1 5808 6163 0 234 0 0 0 chr4 182329534 182329560 -1959102 + (CTG)n Simple_repeat Simple_repeat 3 28 0 2292 103 0 13 chr4 182329596 182329907 -1958755 + AluSx SINE Alu 1 307 -5 218 243 0 27 chr4 182330089 182330163 -1958499 + (TA)n Simple_repeat Simple_repeat 1 72 0 26 0 0 0 chr4 182331428 182331454 -1957208 + AT_rich Low_complexity Low_complexity 1 26 0 303 269 211 18 chr4 182332841 182333012 -1955650 - MIR SINE MIR -13 249 46 182 298 0 53 chr4 182334477 182334534 -1954128 + L2 LINE L2 3238 3291 -22 2045 134 0 0 chr4 182334613 182334919 -1953743 + AluSx SINE Alu 1 306 0 307 278 74 0 chr4 182335354 182335462 -1953200 - MIR SINE MIR -124 138 23 2264 106 0 7 chr4 182336592 182336894 -1951768 - AluSg SINE Alu -10 300 1 443 281 98 38 chr4 182337296 182337531 -1951131 - MIR SINE MIR -13 249 1 414 265 115 60 chr4 182338856 182339090 -1949572 + MIR SINE MIR 16 262 0 251 333 77 8 chr4 182339860 182339977 -1948685 + L2 LINE L2 3147 3271 -1 186 43 0 0 chr4 182340429 182340452 -1948210 + (A)n Simple_repeat Simple_repeat 1 23 0 372 241 89 44 chr4 182340498 182340701 -1947961 - LTR33 LTR ERVL -17 504 293 400 323 25 13 chr4 182340994 182341152 -1947510 + MIR SINE MIR 33 192 -70 940 55 0 0 chr4 182341241 182341351 -1947311 + L1PA8 LINE L1 6055 6164 -8 881 278 111 7 chr4 182342052 182342358 -1946304 + MER93a LTR ERV1 61 398 -4 565 212 8 8 chr4 182342358 182342476 -1946186 - L1PB4 LINE L1 -6 6150 6033 1541 274 52 45 chr4 182342828 182343409 -1945253 - HERVL74 LTR ERVL -598 5087 4503 2830 204 31 36 chr4 182343438 182344111 -1944551 + L1MB4 LINE L1 5470 6139 -41 1777 44 0 0 chr4 182344113 182344316 -1944346 + AluY SINE Alu 1 203 -108 1321 160 9 0 chr4 182344416 182344628 -1944034 - MER57A LTR ERV1 -189 214 1 1777 201 9 62 chr4 182344654 182345092 -1943570 - L1ME2 LINE L1 -10 6949 6535 745 140 0 0 chr4 182345092 182345192 -1943470 + FRAM SINE Alu 64 163 -13 286 271 37 0 chr4 182345282 182345389 -1943273 - L1ME2 LINE L1 -1098 5843 5733 3448 109 0 6 chr4 182345394 182345869 -1942793 - MER9 LTR ERVK 0 511 40 1618 273 33 4 chr4 182345888 182346434 -1942228 - L1ME2 LINE L1 -1216 5725 5164 234 0 0 0 chr4 182346434 182346460 -1942202 + (TTCC)n Simple_repeat Simple_repeat 1 26 0 1370 82 62 5 chr4 182346460 182346655 -1942007 - AluSp SINE Alu -1 312 107 887 164 16 44 chr4 182347008 182347191 -1941471 - L1MC5 LINE L1 -1111 6850 6673 2055 102 14 14 chr4 182347220 182347514 -1941148 - AluSx SINE Alu -18 294 1 2394 97 0 0 chr4 182347538 182347847 -1940815 - AluSc SINE Alu 0 309 1 1654 113 13 175 chr4 182348051 182348433 -1940229 + Tigger1 DNA MER2_type 1 320 -2098 1611 150 94 3 chr4 182348452 182348562 -1940100 + AluJb SINE Alu 1 100 -212 318 34 0 51 chr4 182348562 182348621 -1940041 + (CAAAA)n Simple_repeat Simple_repeat 5 60 0 1611 150 94 3 chr4 182348621 182348796 -1939866 + AluJb SINE Alu 100 312 0 301 143 0 0 chr4 182348804 182348853 -1939809 + Alu SINE Alu 251 299 -1 258 250 27 40 chr4 182348925 182349073 -1939589 + A-rich Low_complexity Low_complexity 5 150 0 2195 113 0 25 chr4 182349288 182349606 -1939056 + AluSx SINE Alu 1 310 -2 1340 273 122 5 chr4 182349607 182350222 -1938440 - L1ME2 LINE L1 -2124 4817 4131 2775 251 59 25 chr4 182350274 182350483 -1938179 - L1ME2 LINE L1 -2883 4058 3858 1958 138 0 26 chr4 182350483 182350787 -1937875 - AluSc SINE Alu -13 296 1 2775 251 59 25 chr4 182350787 182351525 -1937137 - L1ME2 LINE L1 -3083 3858 3088 2339 91 0 10 chr4 182351525 182351833 -1936829 - AluSg SINE Alu -5 305 1 2775 251 59 25 chr4 182351833 182352205 -1936457 - L1ME2 LINE L1 -3853 3088 2730 836 65 9 9 chr4 182352306 182352414 -1936248 - AluY SINE Alu -203 108 1 2923 191 29 25 chr4 182352513 182353001 -1935661 - MER39 LTR ERV1 -3 704 212 1993 128 7 7 chr4 182353001 182353327 -1935335 - AluSg SINE Alu 0 310 1 2923 191 29 25 chr4 182353327 182353466 -1935196 - MER39 LTR ERV1 -495 212 75 1957 164 3 6 chr4 182353984 182354296 -1934366 - AluJo SINE Alu 0 312 2 914 153 0 0 chr4 182354517 182354661 -1934001 + AluJb SINE Alu 156 299 -13 383 261 43 101 chr4 182354663 182354920 -1933742 + L1MEc LINE L1 1649 1890 -4506 691 74 21 0 chr4 182355026 182355121 -1933541 - MSTB LTR MaLR -329 97 1 406 139 42 0 chr4 182355121 182355193 -1933469 - MER4D LTR ERV1 -828 75 1 224 171 0 49 chr4 182355458 182355540 -1933122 + GA-rich Low_complexity Low_complexity 2 79 0 505 118 0 0 chr4 182355632 182355700 -1932962 + U4 snRNA snRNA 1 68 -77 1214 234 22 79 chr4 182356064 182356235 -1932427 - L1ME2 LINE L1 -5987 436 257 2243 71 3 11 chr4 182356235 182356566 -1932096 - AluSg SINE Alu 0 329 1 1214 234 22 79 chr4 182356566 182356838 -1931824 - L1ME2 LINE L1 -6166 257 17 284 300 70 0 chr4 182356966 182357066 -1931596 - L2 LINE L2 -27 3245 3139 25 0 0 0 chr4 182357527 182357552 -1931110 + AT_rich Low_complexity Low_complexity 1 25 0 2035 127 13 13 chr4 182357552 182357860 -1930802 - AluSx SINE Alu 0 312 5 2097 134 0 3 chr4 182358873 182359179 -1929483 - AluSx SINE Alu -7 305 1 2205 117 0 0 chr4 182359681 182360006 -1928656 + AluSq SINE Alu 3 313 0 350 371 69 50 chr4 182360312 182360689 -1927973 - L2 LINE L2 -21 3251 2868 848 312 49 43 chr4 182361021 182361569 -1927093 - MLT1K LTR MaLR -2 586 10 1815 174 97 0 chr4 182362315 182362666 -1925996 + L1 LINE L1 3852 4236 -1910 312 179 32 105 chr4 182362773 182362963 -1925699 + (CCCA)n Simple_repeat Simple_repeat 2 177 0 1151 282 37 51 chr4 182362970 182363515 -1925147 + HERVL74 LTR ERVL 5037 5670 -15 2410 203 9 2 chr4 182363523 182363977 -1924685 + MER74C LTR ERVL 2 458 -2 321 186 23 15 chr4 182363979 182364072 -1924590 - L1 LINE L1 -2183 4199 4109 2287 97 0 0 chr4 182364091 182364381 -1924281 - AluSx SINE Alu -22 290 1 2149 234 58 9 chr4 182364381 182364962 -1923700 - L1 LINE L1 -2249 4133 3524 4506 230 29 31 chr4 182365015 182366072 -1922590 - L1 LINE L1 -4184 2198 1140 267 54 0 0 chr4 182366072 182366109 -1922553 + (TA)n Simple_repeat Simple_repeat 2 38 0 4506 230 29 31 chr4 182366109 182366129 -1922533 - L1 LINE L1 -5242 1140 1121 2246 108 0 0 chr4 182366129 182366417 -1922245 - AluSx SINE Alu -16 296 9 4506 230 29 31 chr4 182366417 182366693 -1921969 - L1 LINE L1 -5261 1121 800 267 241 0 35 chr4 182366914 182366972 -1921690 - L1 LINE L1 -6085 228 173 21 57 0 0 chr4 182367735 182367770 -1920892 + AT_rich Low_complexity Low_complexity 1 35 0 3526 192 31 8 chr4 182367879 182368617 -1920045 - L1 LINE L1 -1004 5142 4388 3157 197 13 22 chr4 182368619 182369244 -1919418 + L1MA10 LINE L1 5713 6331 -3 639 129 0 0 chr4 182369407 182369492 -1919170 - AluJ/FLAM SINE Alu -226 86 2 855 247 114 122 chr4 182369493 182369980 -1918682 + LOR1-int LTR ERV1 1622 2104 -4227 2404 101 0 0 chr4 182369980 182370286 -1918376 - AluSx SINE Alu -6 306 1 855 247 114 122 chr4 182370286 182370413 -1918249 + LOR1-int LTR ERV1 2104 2231 -4100 979 233 11 21 chr4 182370809 182371051 -1917611 + LOR1-int LTR ERV1 751 2658 -3673 294 259 0 0 chr4 182371051 182371109 -1917553 + MER31A LTR ERV1 26 83 -402 496 205 10 176 chr4 182371112 182371317 -1917345 - MER73 LTR ERVL -450 194 24 2248 132 0 0 chr4 182371450 182371754 -1916908 - AluSx SINE Alu -8 304 1 350 186 0 14 chr4 182371870 182371940 -1916722 + LTR57-int LTR ERVL 1029 1097 -4246 1956 197 79 113 chr4 182371952 182372923 -1915739 + LTR1B LTR ERV1 1 1020 0 461 192 0 0 chr4 182373136 182373209 -1915453 + LOR1-int LTR ERV1 3264 3336 -2995 523 248 50 44 chr4 182373349 182373752 -1914910 + LOR1-int LTR ERV1 1713 2002 -2934 495 248 30 73 chr4 182373744 182373978 -1914684 + LOR1-int LTR ERV1 2706 2929 -1951 * 456 143 3 69 chr4 182374071 182374197 -1914465 + LOR1-int LTR ERV1 3779 4452 -2092 1648 118 64 55 chr4 182374236 182374582 -1914080 + LOR1-int LTR ERV1 4119 4467 -1864 2308 89 0 19 chr4 182374695 182375009 -1913653 + AluY SINE Alu 1 308 -3 1776 166 47 13 chr4 182375394 182375695 -1912967 - AluJo SINE Alu -1 311 1 210 220 20 0 chr4 182378324 182378374 -1910288 - MIR SINE MIR -211 51 1 297 75 0 0 chr4 182378678 182378718 -1909944 + (TTTTA)n Simple_repeat Simple_repeat 3 42 0 1614 184 0 11 chr4 182378723 182379001 -1909661 - AluJb SINE Alu -26 286 12 1595 186 31 10 chr4 182379031 182379322 -1909340 - AluJo SINE Alu -15 297 1 333 288 148 55 chr4 182379322 182379558 -1909104 - HAL1 LINE L1 -910 1597 1340 2011 170 36 36 chr4 182380393 182380620 -1908042 - MSTA LTR MaLR 0 428 199 2050 115 10 29 chr4 182380620 182380934 -1907728 - AluSx SINE Alu -4 308 1 2011 170 36 36 chr4 182380934 182381118 -1907544 - MSTA LTR MaLR -228 200 17 2309 84 3 13 chr4 182381261 182381560 -1907102 - AluSp SINE Alu -17 296 1 6085 122 36 17 chr4 182382255 182383206 -1905456 - LTR5 LTR ERVK 0 969 1 1861 100 0 0 chr4 182383348 182383589 -1905073 - AluSg SINE Alu -9 301 61 2551 85 131 5 chr4 182383590 182383988 -1904674 + LTR7 LTR ERV1 1 448 -2 3236 102 0 21 chr4 182383990 182384459 -1904203 + HERVH LTR ERV1 1 459 -7254 15120 102 7 21 chr4 182384512 182386746 -1901916 + HERVH LTR ERV1 793 2995 -4718 5739 119 2 3 chr4 182386725 182387580 -1901082 + HERVH LTR ERV1 3140 3993 -3720 * 4593 128 1 3 chr4 182387582 182388245 -1900417 + HERVH LTR ERV1 4488 5149 -2564 1361 139 19 0 chr4 182388246 182388462 -1900200 + HERVH LTR ERV1 5600 5819 -1894 2407 98 50 13 chr4 182388462 182388838 -1899824 + HERVH LTR ERV1 7324 7713 0 421 129 0 0 chr4 182388838 182388900 -1899762 + LTR7 LTR ERV1 1 62 -388 663 91 131 0 chr4 182389000 182389099 -1899563 + MER51A LTR ERV1 523 634 0 26 30 0 0 chr4 182389103 182389136 -1899526 + AT_rich Low_complexity Low_complexity 1 33 0 2202 103 3 0 chr4 182389728 182390057 -1898605 + AluSx SINE Alu 1 312 0 24 32 0 0 chr4 182391352 182391383 -1897279 + AT_rich Low_complexity Low_complexity 1 31 0 1808 117 0 0 chr4 182391431 182391670 -1896992 + AluSx SINE Alu 61 299 -13 2449 91 0 0 chr4 182393640 182393947 -1894715 - AluSg SINE Alu -3 307 1 310 250 12 12 chr4 182394097 182394177 -1894485 + L2 LINE L2 2988 3067 -205 1050 116 0 0 chr4 182394598 182394744 -1893918 - AluSg/x SINE Alu -5 305 160 2252 73 7 11 chr4 182395000 182395317 -1893345 + AluSq SINE Alu 1 316 0 27 49 0 0 chr4 182395320 182395361 -1893301 + AT_rich Low_complexity Low_complexity 1 41 0 271 211 40 13 chr4 182395449 182395525 -1893137 + L1ME4a LINE L1 5963 6040 -81 2511 139 72 0 chr4 182395787 182396205 -1892457 + MER83 LTR ERV1 1 448 0 323 352 141 0 chr4 182396312 182396525 -1892137 - MIR SINE MIR -12 250 8 220 238 48 0 chr4 182396566 182396629 -1892033 - MIR SINE MIR -112 150 85 1228 172 17 0 chr4 182398057 182398289 -1890373 + L1MA5 LINE L1 6065 6300 0 2297 96 0 0 chr4 182399694 182400018 -1888644 - AluSc SINE Alu 0 324 1 32 0 0 0 chr4 182400020 182400052 -1888610 + AT_rich Low_complexity Low_complexity 1 32 0 24 32 0 0 chr4 182400210 182400241 -1888421 + AT_rich Low_complexity Low_complexity 1 31 0 1817 146 13 39 chr4 182400244 182400552 -1888110 - AluJo SINE Alu -12 300 1 5654 123 49 13 chr4 182400593 182401526 -1887136 + Tigger3b DNA MER2_type 66 1032 -199 2394 207 71 81 chr4 182401629 182402334 -1886328 - LTR8A LTR ERV1 0 727 30 1211 184 47 9 chr4 182402333 182402566 -1886096 + MSTB LTR MaLR 185 426 0 * 4860 138 16 36 chr4 182402566 182402939 -1885723 + MER4D LTR ERV1 71 450 -453 2466 83 3 0 chr4 182402939 182403239 -1885423 + AluY SINE Alu 1 301 -10 4860 138 16 36 chr4 182403239 182403704 -1884958 + MER4D LTR ERV1 450 892 -11 251 297 44 22 chr4 182403726 182403817 -1884845 + L2 LINE L2 3219 3311 -2 439 203 58 35 chr4 182405181 182405361 -1883301 + LTR48 LTR ERV1 11 284 -452 450 196 120 80 chr4 182405413 182405663 -1882999 + LTR48B LTR ERV1 385 644 0 270 273 13 0 chr4 182405773 182405850 -1882812 + GA-rich Low_complexity Low_complexity 1 78 0 4866 149 63 9 chr4 182406402 182407254 -1881408 - MER4D LTR ERV1 -5 898 1 2038 137 0 0 chr4 182407710 182408002 -1880660 - AluSx SINE Alu -20 292 1 24 0 0 0 chr4 182409933 182409957 -1878705 + AT_rich Low_complexity Low_complexity 1 24 0 2167 124 3 0 chr4 182410331 182410629 -1878033 + AluSx SINE Alu 1 299 -13 2256 136 83 5 chr4 182410734 182411130 -1877532 + MSTA LTR MaLR 1 427 -1 2320 146 68 19 chr4 182411573 182411998 -1876664 - MER83 LTR ERV1 0 448 3 1562 166 40 27 chr4 182412934 182413230 -1875432 + AluJo SINE Alu 1 300 -12 430 324 110 18 chr4 182413542 182413761 -1874901 - MIR SINE MIR -22 240 2 2225 98 0 3 chr4 182414855 182415161 -1873501 - AluSc SINE Alu 0 309 1 1100 71 0 21 chr4 182415161 182415298 -1873364 - AluSc SINE Alu -175 134 1 1643 252 97 8 chr4 182415413 182415948 -1872714 + L1ME2 LINE L1 5296 5878 -286 2118 112 0 0 chr4 182415949 182416225 -1872437 + AluSx SINE Alu 1 276 -36 1995 128 3 29 chr4 182416399 182416711 -1871951 - AluSx SINE Alu -8 304 1 1730 202 47 3 chr4 182419687 182420028 -1868634 - LTR39 LTR ERV1 0 783 428 1274 116 63 0 chr4 182420042 182420232 -1868430 - LTR39 LTR ERV1 -581 202 1 250 309 11 0 chr4 182420342 182420436 -1868226 + L2 LINE L2 834 928 -2386 851 241 85 27 chr4 182420445 182420740 -1867922 + L2 LINE L2 3002 3313 0 2140 198 43 42 chr4 182421349 182421901 -1866761 + MER74A LTR ERVL 6 558 0 183 224 60 45 chr4 182422231 182422298 -1866364 - MIR3 SINE MIR -37 171 104 186 267 53 40 chr4 182422423 182422498 -1866164 + MIR SINE MIR 6 81 -181 3573 157 36 6 chr4 182422600 182423242 -1865420 + MER39 LTR ERV1 7 667 -40 1051 118 0 39 chr4 182423244 182423422 -1865240 + AluSg/x SINE Alu 140 310 0 2273 105 3 0 chr4 182423432 182423727 -1864935 + AluSg SINE Alu 1 296 -14 244 316 28 69 chr4 182423858 182424076 -1864586 + L2 LINE L2 3085 3293 -20 2251 75 14 7 chr4 182424514 182424830 -1863832 + AluSq SINE Alu 1 318 0 342 67 0 0 chr4 182426637 182426682 -1861980 + (TG)n Simple_repeat Simple_repeat 2 46 0 309 356 6 23 chr4 182427416 182427593 -1861069 + MER5B DNA MER1_type 1 174 -4 180 271 56 65 chr4 182427811 182427918 -1860744 - MER5A DNA MER1_type -32 157 52 2249 108 3 0 chr4 182428950 182429246 -1859416 + AluSp SINE Alu 1 297 -16 318 301 206 15 chr4 182429592 182429791 -1858871 + MIR SINE MIR 26 262 0 2818 37 3 14 chr4 182429936 182430285 -1858377 + L1PA4 LINE L1 5811 6155 0 1037 140 23 0 chr4 182430374 182430545 -1858117 + AluSq SINE Alu 137 311 -2 2312 85 14 0 chr4 182430915 182431208 -1857454 + AluSg SINE Alu 1 297 -13 235 329 139 32 chr4 182431252 182431358 -1857304 - MLT1L LTR MaLR -332 283 190 1215 192 111 11 chr4 182431358 182431655 -1857007 + AluJo SINE Alu 5 302 0 235 329 139 32 chr4 182431655 182431800 -1856862 - MLT1L LTR MaLR -425 190 5 188 328 31 0 chr4 182433233 182433297 -1855365 - L2 LINE L2 -2 3270 3205 2408 96 58 19 chr4 182434097 182434208 -1854454 - MER51B LTR ERV1 0 377 272 2476 78 0 3 chr4 182434208 182434514 -1854148 + AluSq SINE Alu 1 305 -8 2408 96 58 19 chr4 182434514 182434765 -1853897 - MER51B LTR ERV1 -105 272 1 1954 148 0 3 chr4 182435104 182435388 -1853274 + AluJb SINE Alu 12 294 -18 404 294 26 7 chr4 182435577 182435730 -1852932 + MER103 DNA DNA 2 157 -9 189 0 0 0 chr4 182436934 182436955 -1851707 + (GA)n Simple_repeat Simple_repeat 2 22 0 378 264 96 32 chr4 182437061 182437281 -1851381 + MER90 LTR ERV1 32 265 -310 2400 103 3 0 chr4 182437293 182437605 -1851057 - AluSq SINE Alu 0 313 1 633 220 95 18 chr4 182437649 182437817 -1850845 + MER90 LTR ERV1 434 614 0 2126 175 65 91 chr4 182438014 182438552 -1850110 + LTR8 LTR ERV1 1 524 -167 302 191 0 0 chr4 182438558 182438605 -1850057 + LTR8 LTR ERV1 642 688 -3 1648 196 11 0 chr4 182438605 182438881 -1849781 - AluJo SINE Alu -33 279 1 2025 197 93 68 chr4 182438933 182439093 -1849569 - LTR8 LTR ERV1 0 691 537 2424 88 0 7 chr4 182439093 182439399 -1849263 - AluSx SINE Alu -8 304 1 2025 197 93 68 chr4 182439399 182439912 -1848750 - LTR8 LTR ERV1 -154 537 1 1862 109 102 0 chr4 182440008 182440370 -1848292 - AluSp SINE Alu 0 391 1 812 276 55 41 chr4 182440394 182440687 -1847975 + LTR16A LTR ERVL 141 437 -13 1017 209 26 17 chr4 182441493 182441723 -1846939 - L1MB8 LINE L1 -1 6177 5946 459 140 140 11 chr4 182442342 182442435 -1846227 + MER51A LTR ERV1 1 105 -529 508 191 85 0 chr4 182442449 182442543 -1846119 + MER51B LTR ERV1 50 151 -226 4217 176 15 11 chr4 182442647 182443453 -1845209 + L1MA5A LINE L1 4537 5345 -801 526 211 0 0 chr4 182443453 182443557 -1845105 - AluSg/x SINE Alu -7 305 202 5235 133 49 36 chr4 182443559 182443900 -1844762 + L1MA5A LINE L1 5342 5677 -620 2009 147 0 20 chr4 182443900 182444199 -1844463 - AluSq SINE Alu -19 294 2 5235 133 49 36 chr4 182444199 182444331 -1844331 + L1MA5A LINE L1 5677 5806 -491 237 83 0 0 chr4 182444331 182444367 -1844295 + (CA)n Simple_repeat Simple_repeat 2 37 0 5235 133 49 36 chr4 182444367 182444836 -1843826 + L1MA5A LINE L1 5806 6297 0 339 315 31 23 chr4 182445336 182445466 -1843196 - MIR SINE MIR -118 144 14 233 309 0 32 chr4 182446569 182446663 -1841999 + MIR SINE MIR 71 161 -101 477 283 89 31 chr4 182448521 182448851 -1839811 + MLT1J2 LTR MaLR 59 382 -68 2217 103 20 3 chr4 182451030 182451322 -1837340 + AluSx SINE Alu 1 297 -15 378 309 51 6 chr4 182451547 182451722 -1836940 + MLT1J2 LTR MaLR 50 232 -218 2279 120 0 0 chr4 182452824 182453124 -1835538 - AluSx SINE Alu -12 300 1 2491 212 36 13 chr4 182453658 182454190 -1834472 + MLT2B3 LTR ERVL 11 554 0 4967 137 30 20 chr4 182454250 182455118 -1833544 - L1PB4 LINE L1 -4 6152 5276 507 248 124 12 chr4 182455118 182455279 -1833383 - LTR16C LTR ERVL -31 460 282 219 257 81 14 chr4 182455807 182455881 -1832781 + MIR SINE MIR 88 166 -96 263 244 23 12 chr4 182456225 182456311 -1832351 - L2 LINE L2 0 3313 3227 243 267 0 0 chr4 182456598 182456658 -1832004 + (CAATT)n Simple_repeat Simple_repeat 3 62 0 503 333 80 28 chr4 182458176 182458425 -1830237 - L1MEd LINE L1 -5610 509 248 463 222 26 0 chr4 182459506 182459623 -1829039 + L1ME4a LINE L1 5973 6092 -29 515 202 10 10 chr4 182459683 182459787 -1828875 + L2 LINE L2 2684 2787 -527 297 244 93 0 chr4 182459847 182459933 -1828729 + MER5A DNA MER1_type 9 102 -87 2273 78 3 0 chr4 182460326 182460645 -1828017 - AluSq SINE Alu 0 320 1 279 238 30 40 chr4 182460708 182460809 -1827853 - MER20B DNA MER1_type -631 152 53 1542 197 23 16 chr4 182461692 182461996 -1826666 - AluJo SINE Alu -6 306 1 23 33 0 0 chr4 182462212 182462242 -1826420 + AT_rich Low_complexity Low_complexity 1 30 0 240 359 7 28 chr4 182462575 182462720 -1825942 + L1ME LINE L1 418 559 -5646 2550 91 19 21 chr4 182462762 182463134 -1825528 + L1PA10 LINE L1 5794 6164 -4 545 268 58 80 chr4 182463382 182463679 -1824983 + L1ME LINE L1 662 964 -5241 1298 146 31 18 chr4 182463679 182463905 -1824757 + L1PA16 LINE L1 5935 6163 -3 545 268 58 80 chr4 182463905 182463991 -1824671 + L1ME LINE L1 964 1050 -5155 1385 175 12 109 chr4 182463991 182464149 -1824513 + AluJb SINE Alu 1 112 -190 1239 60 0 27 chr4 182464149 182464334 -1824328 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1385 175 12 109 chr4 182464334 182464506 -1824156 + AluJb SINE Alu 112 299 -3 1072 167 24 16 chr4 182464515 182464761 -1823901 + L1MA9 LINE L1 6064 6311 -1 545 268 58 80 chr4 182464761 182464968 -1823694 + L1ME LINE L1 1058 1199 -5006 228 35 0 0 chr4 182465009 182465038 -1823624 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 925 184 0 0 chr4 182465144 182465296 -1823366 - AluSg/x SINE Alu -27 285 134 987 236 50 134 chr4 182465302 182465506 -1823156 + L1ME LINE L1 1448 1667 -4729 1860 182 0 3 chr4 182465506 182465814 -1822848 + AluJb SINE Alu 1 307 -5 987 236 50 134 chr4 182465814 182466282 -1822380 + L1ME LINE L1 1667 2064 -4332 2054 107 4 4 chr4 182466775 182467055 -1821607 + AluSc SINE Alu 1 280 -29 204 194 0 0 chr4 182467055 182467091 -1821571 + (ATG)n Simple_repeat Simple_repeat 2 37 0 426 132 0 0 chr4 182467354 182467422 -1821240 - MER57B LTR ERV1 -3 431 364 455 183 0 0 chr4 182667422 182667493 -1621169 + MER41D LTR ERV1 487 557 0 22 0 0 0 chr4 182667714 182667736 -1620926 + AT_rich Low_complexity Low_complexity 1 22 0 647 81 0 0 chr4 182668134 182668220 -1620442 - AluJ/FLAM SINE Alu -226 86 1 306 0 0 0 chr4 182668712 182668746 -1619916 + (CA)n Simple_repeat Simple_repeat 2 35 0 789 225 67 17 chr4 182669277 182669517 -1619145 - MIR SINE MIR -7 255 4 941 197 76 15 chr4 182669541 182669739 -1618923 - MER20 DNA MER1_type -2 217 8 2071 107 0 7 chr4 182669887 182670176 -1618486 - AluSx SINE Alu -23 289 3 252 0 0 0 chr4 182670225 182670253 -1618409 + (T)n Simple_repeat Simple_repeat 1 28 0 626 155 0 0 chr4 182670714 182670817 -1617845 + U6 snRNA snRNA 1 103 -4 873 253 181 18 chr4 182671065 182671555 -1617107 + MLT1F1 LTR MaLR 1 567 0 1344 189 101 15 chr4 182672056 182672384 -1616278 + L1MA9 LINE L1 5954 6309 -3 189 250 94 0 chr4 182672473 182672537 -1616125 + L2 LINE L2 3193 3262 -51 1605 234 37 25 chr4 182672797 182673198 -1615464 + MLT2D LTR ERVL 2 407 -7 252 0 0 0 chr4 182673202 182673230 -1615432 + (TG)n Simple_repeat Simple_repeat 1 28 0 26 0 0 0 chr4 182673256 182673282 -1615380 + AT_rich Low_complexity Low_complexity 1 26 0 810 139 33 0 chr4 182673283 182673405 -1615257 - FLAM_C SINE Alu -7 126 1 1314 213 18 15 chr4 182673422 182673694 -1614968 - MLT2D LTR ERVL -139 275 3 1710 139 0 0 chr4 182674681 182674932 -1613730 + AluSx SINE Alu 53 303 -9 2156 99 10 32 chr4 182675027 182675341 -1613321 - AluSc SINE Alu -2 307 1 621 202 40 46 chr4 182675631 182675804 -1612858 - L1MA9 LINE L1 -35 6277 6106 1780 196 45 13 chr4 182675806 182676204 -1612458 + MSTA LTR MaLR 5 415 -13 321 228 26 44 chr4 182676304 182676418 -1612244 + L1M4 LINE L1 4566 4677 -1469 210 71 0 0 chr4 182676810 182676838 -1611824 + (GA)n Simple_repeat Simple_repeat 1 28 0 574 158 30 30 chr4 182676921 182677085 -1611577 - L1M4 LINE L1 -3213 2933 2770 1818 162 13 22 chr4 182677089 182677403 -1611259 - AluJo SINE Alu -1 311 1 722 197 0 35 chr4 182677419 182677561 -1611101 - FLAM_C SINE Alu -5 138 2 641 217 217 28 chr4 182677564 182677817 -1610845 - L1M4 LINE L1 -3382 2764 2464 309 254 122 33 chr4 182678099 182678280 -1610382 + MSTB2 LTR MaLR 15 211 -246 * 343 169 13 13 chr4 182678256 182678346 -1610316 + Alu SINE Alu 245 298 -2 242 148 0 115 chr4 182678343 182678404 -1610258 + MSTB2 LTR MaLR 375 428 0 * 1304 298 146 22 chr4 182678854 182679249 -1609413 + L1ME LINE L1 259 604 -5476 533 15 15 0 chr4 182679249 182679315 -1609347 + (TCTA)n Simple_repeat Simple_repeat 1 67 0 1304 298 146 22 chr4 182679315 182679887 -1608775 + L1ME LINE L1 604 1354 -4726 2147 222 78 45 chr4 182679887 182680423 -1608239 - MLT1E2 LTR MaLR 0 626 73 905 179 19 0 chr4 182680425 182680581 -1608081 - MSTD LTR MaLR -1 395 237 2002 151 93 8 chr4 182680582 182680947 -1607715 - MSTA LTR MaLR -30 398 3 342 176 16 152 chr4 182680947 182681072 -1607590 + L1ME LINE L1 2220 2327 -3753 2449 69 3 0 chr4 182681174 182681465 -1607197 - AluY SINE Alu -19 292 1 996 189 0 12 chr4 182681676 182681840 -1606822 + FRAM SINE Alu 1 158 -18 1124 260 60 0 chr4 182682260 182682575 -1606087 - MLT1E LTR MaLR 0 593 260 434 204 9 0 chr4 182682884 182682992 -1605670 + (TCCA)n Simple_repeat Simple_repeat 3 111 0 984 142 113 45 chr4 182686301 182686548 -1602114 - L1MB7 LINE L1 -11 6173 5910 2283 120 146 5 chr4 182686550 182686941 -1601721 - Tigger2 DNA MER2_type 0 2718 2273 251 150 0 163 chr4 182686933 182687013 -1601649 - Tigger2 DNA MER2_type -2651 67 1 * 296 73 0 0 chr4 182687014 182687055 -1601607 - L1MB7 LINE L1 -266 5908 5868 538 168 8 8 chr4 182687226 182687345 -1601317 + GA-rich Low_complexity Low_complexity 2 120 0 2088 120 28 3 chr4 182687571 182687862 -1600800 - AluSq SINE Alu -14 299 2 2482 77 0 0 chr4 182687875 182688173 -1600489 - AluSx SINE Alu -11 301 4 188 191 21 21 chr4 182688701 182688748 -1599914 - MIR SINE MIR -98 164 118 246 132 0 0 chr4 182689930 182689968 -1598694 + LTR60 LTR ERV1 1 38 -548 2326 102 3 3 chr4 182690738 182691051 -1597611 + AluSq SINE Alu 1 313 0 2087 98 0 4 chr4 182691397 182691673 -1596989 + AluSq SINE Alu 39 313 0 278 365 48 0 chr4 182692846 182692991 -1595671 - MIR3 SINE MIR 0 208 57 463 246 128 17 chr4 182693566 182693827 -1594835 + MLT2E LTR ERVL 5 288 -375 386 293 70 6 chr4 182693845 182694002 -1594660 + MLT2F LTR ERVL 413 579 -84 274 282 77 32 chr4 182694050 182694206 -1594456 + ERVL-F LTR ERVL 4 166 -5598 2445 71 10 0 chr4 182694234 182694531 -1594131 + AluSc SINE Alu 1 300 -9 315 291 213 14 chr4 182694627 182694742 -1593920 + MERVL LTR ERVL 3009 3158 -2327 1671 170 42 77 chr4 182694742 182695119 -1593543 + MLT1A1 LTR MaLR 2 365 0 315 291 213 14 chr4 182695119 182695144 -1593518 + MERVL LTR ERVL 3158 3177 -2308 747 264 6 33 chr4 182695145 182695211 -1593451 + MER8 DNA MER2_type 3 69 -170 2269 114 57 20 chr4 182695211 182695562 -1593100 - THE1B LTR MaLR 0 364 1 747 264 6 33 chr4 182695562 182695677 -1592985 + MER8 DNA MER2_type 69 179 -60 422 172 0 0 chr4 182695652 182695716 -1592946 + MER2 DNA MER2_type 282 345 0 * 539 294 108 10 chr4 182695723 182695927 -1592735 + MERVL LTR ERVL 3181 3404 -2250 247 290 37 0 chr4 182695967 182696129 -1592533 + (ACTG)n Simple_repeat Simple_repeat 4 171 0 1525 275 24 24 chr4 182696186 182696687 -1591975 + MERVL LTR ERVL 3378 3878 -1776 1833 166 3 0 chr4 182697094 182697395 -1591267 + AluJb SINE Alu 1 302 -10 405 302 40 22 chr4 182697558 182697780 -1590882 - MIR SINE MIR -20 242 17 4424 42 0 16 chr4 182699723 182699737 -1588925 + L1PA4 LINE L1 5601 5614 -545 2036 144 3 3 chr4 182699737 182700042 -1588620 + AluSx SINE Alu 1 305 -7 4424 42 0 16 chr4 182700042 182700595 -1588067 + L1PA4 LINE L1 5614 6159 0 2197 111 3 13 chr4 182702044 182702342 -1586320 - AluSc SINE Alu -14 295 1 2338 36 0 46 chr4 182703077 182703380 -1585282 + L1PA4 LINE L1 5864 6152 -3 2452 88 0 0 chr4 182703941 182704246 -1584416 + AluSp SINE Alu 1 305 -8 191 152 22 0 chr4 182704909 182704955 -1583707 + (TG)n Simple_repeat Simple_repeat 2 48 0 230 278 52 61 chr4 182706197 182706312 -1582350 - L1MEd LINE L1 -5502 617 504 357 290 88 81 chr4 182706434 182706667 -1581995 - L1MEd LINE L1 -5743 376 139 2610 46 0 3 chr4 182706667 182706974 -1581688 - AluY SINE Alu -5 306 1 357 290 88 81 chr4 182706974 182707012 -1581650 - L1MEd LINE L1 -5980 139 103 1000 106 0 0 chr4 182707183 182707315 -1581347 - AluJb SINE Alu -14 298 167 2332 104 13 0 chr4 182707425 182707734 -1580928 - AluSq SINE Alu 0 313 1 1960 170 0 3 chr4 182707737 182708049 -1580613 - AluJb SINE Alu -1 311 1 3454 217 18 40 chr4 182708147 182708987 -1579675 + L1MA9 LINE L1 5442 6262 -50 384 171 0 0 chr4 182709404 182709486 -1579176 + (TG)n Simple_repeat Simple_repeat 1 82 0 191 322 17 0 chr4 182710244 182710303 -1578359 + L2 LINE L2 3240 3299 -14 1770 179 3 0 chr4 182710304 182710605 -1578057 - AluJo SINE Alu -10 302 1 2340 105 0 3 chr4 182710859 182711172 -1577490 - AluSx SINE Alu 0 312 1 1199 182 57 5 chr4 182711978 182712187 -1576475 + AluJo SINE Alu 1 220 -92 258 95 95 0 chr4 182712191 182712233 -1576429 + AluJo SINE Alu 90 135 -167 2198 106 3 0 chr4 182713700 182713993 -1574669 - AluY SINE Alu -16 295 2 2304 228 25 19 chr4 182714072 182714541 -1574121 - MER87 LTR ERV1 -18 523 49 186 43 0 0 chr4 182714541 182714564 -1574098 + (CGGGG)n Simple_repeat Simple_repeat 2 24 0 2304 228 25 19 chr4 182714564 182714612 -1574050 - MER87 LTR ERV1 -492 49 3 2199 92 0 33 chr4 182714676 182714979 -1573683 + AluSg1 SINE Alu 1 293 -16 401 286 168 10 chr4 182715492 182715688 -1572974 + MIR SINE MIR 21 247 -15 1716 134 3 78 chr4 182715703 182716038 -1572624 + AluJo SINE Alu 1 310 -2 1305 108 0 31 chr4 182716038 182716232 -1572430 + AluYa5 SINE Alu 124 311 0 213 309 73 0 chr4 182716290 182716400 -1572262 - MIR SINE MIR -73 189 72 2211 90 0 48 chr4 182716407 182716719 -1571943 + AluSc SINE Alu 1 297 -12 2671 189 51 28 chr4 182717406 182717870 -1570792 + L1MB3 LINE L1 4870 5322 -867 2125 108 0 20 chr4 182717870 182718175 -1570487 + AluSq SINE Alu 1 299 -14 594 102 0 31 chr4 182718086 182718184 -1570478 + AluSc SINE Alu 210 304 -5 * 2671 189 51 28 chr4 182718175 182718682 -1569980 + L1MB3 LINE L1 5322 5885 -304 506 144 0 10 chr4 182718924 182719021 -1569641 + (GGAA)n Simple_repeat Simple_repeat 3 98 0 308 338 63 30 chr4 182719064 182719463 -1569199 - MERVL LTR ERVL -163 5322 4911 2311 122 31 21 chr4 182719759 182720145 -1568517 - MLT1B LTR MaLR 0 390 1 436 308 35 25 chr4 182720360 182720558 -1568104 - MERVL LTR ERVL -1388 4376 4177 282 353 32 9 chr4 182720846 182721064 -1567598 - MERVL LTR ERVL -1582 3903 3681 800 269 28 21 chr4 182721129 182721415 -1567247 + L1ME3A LINE L1 5873 6160 -10 745 288 164 37 chr4 182721449 182722279 -1566383 + L1M4 LINE L1 4280 5214 -932 595 225 54 0 chr4 182722283 182722412 -1566250 + FLAM_C SINE Alu 8 143 0 373 277 64 11 chr4 182722414 182722602 -1566060 + L1M4 LINE L1 5198 5395 -751 871 321 60 44 chr4 182722602 182723547 -1565115 + HERV16 LTR ERVL 2742 3454 -1542 731 195 31 19 chr4 182723549 182723708 -1564954 - LTR47B LTR ERVL -79 364 204 271 352 102 0 chr4 182723742 182723850 -1564812 - LTR47A LTR ERVL -332 120 2 1448 346 65 39 chr4 182723882 182724986 -1563676 + HERV16 LTR ERVL 3826 4980 -784 1465 200 7 0 chr4 182724986 182725276 -1563386 + L1MB3 LINE L1 5884 6175 -8 1448 346 65 39 chr4 182725276 182725638 -1563024 + HERV16 LTR ERVL 4980 5331 -433 779 275 53 36 chr4 182725830 182726113 -1562549 + LTR16A LTR ERVL 33 318 -132 10694 153 27 8 chr4 182726283 182729022 -1559640 - L1PBa LINE L1 -2110 4752 1811 2210 130 0 0 chr4 182729022 182729315 -1559347 - AluSg SINE Alu -17 293 1 10694 153 27 8 chr4 182729315 182730515 -1558147 - L1PBa LINE L1 -5051 1811 634 470 214 10 0 chr4 182730515 182730618 -1558044 - L1PBa LINE L1 -6663 200 97 755 168 16 0 chr4 182730618 182730743 -1557919 + AluJb SINE Alu 138 264 -48 1265 184 55 8 chr4 182730765 182731021 -1557641 + MSTB1 LTR MaLR 165 432 0 207 345 81 0 chr4 182731440 182731527 -1557135 + L2 LINE L2 3137 3230 -42 960 156 43 33 chr4 182732972 182733183 -1555479 + MSTB1 LTR MaLR 184 396 -36 4238 49 0 0 chr4 182733184 182733692 -1554970 - L1PA5 LINE L1 0 6154 5647 375 77 0 0 chr4 182733692 182733744 -1554918 + L1P LINE L1 5099 5150 -996 250 218 0 0 chr4 182733744 182733799 -1554863 + MSTB1 LTR MaLR 372 426 0 2660 248 31 5 chr4 182733815 182734577 -1554085 - L1 LINE L1 -2709 3437 2656 260 253 121 0 chr4 182734631 182734722 -1553940 - L1P LINE L1 -1134 5012 4911 574 236 156 17 chr4 182734863 182735151 -1553511 - L1MC5 LINE L1 -413 7548 7221 314 316 22 15 chr4 182735305 182735441 -1553221 + MIR3 SINE MIR 41 177 -31 1348 231 18 0 chr4 182735888 182736169 -1552493 - AluJo SINE Alu -25 287 2 2083 118 32 16 chr4 182736393 182736707 -1551955 + MER1B DNA MER1_type 21 339 0 4913 236 78 52 chr4 182736708 182737693 -1550969 + ERVL-F LTR ERVL 3904 5017 -747 1685 167 15 0 chr4 182737693 182737957 -1550705 + AluJb SINE Alu 28 295 -17 4913 236 78 52 chr4 182737957 182738717 -1549945 + ERVL-F LTR ERVL 5017 5756 -8 551 262 7 14 chr4 182738717 182738858 -1549804 + MLT2F LTR ERVL 1 140 -523 2195 103 0 39 chr4 182738858 182739170 -1549492 - AluSc SINE Alu -9 300 1 693 251 50 25 chr4 182739777 182740016 -1548646 + LTR16A1 LTR ERVL 201 445 -12 231 224 30 15 chr4 182740305 182740372 -1548290 + L2 LINE L2 3204 3271 -1 257 300 53 12 chr4 182740835 182740956 -1547706 + MIR SINE MIR 19 139 -69 212 197 40 40 chr4 182741502 182741578 -1547084 + (CACAC)n Simple_repeat Simple_repeat 1 76 0 450 217 174 19 chr4 182743419 182743580 -1545082 - MIR SINE MIR -52 210 25 359 40 0 20 chr4 182743662 182743712 -1544950 + (TA)n Simple_repeat Simple_repeat 2 50 0 2301 104 3 3 chr4 182744276 182744583 -1544079 + AluSx SINE Alu 1 307 -5 2273 110 3 0 chr4 182744583 182744883 -1543779 + AluSx SINE Alu 1 301 -11 24 32 0 0 chr4 182745577 182745608 -1543054 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr4 182745746 182745770 -1542892 + AT_rich Low_complexity Low_complexity 1 24 0 1254 168 42 0 chr4 182746038 182746276 -1542386 - L1MA9 LINE L1 0 6312 6065 748 201 8 0 chr4 182747095 182747229 -1541433 - AluJo SINE Alu -176 136 2 4593 57 24 16 chr4 182747530 182748557 -1540105 + MER11A LTR ERVK 1 1266 0 378 138 31 0 chr4 182748950 182749015 -1539647 - L1MA9 LINE L1 -252 6060 5994 2291 114 3 0 chr4 182749135 182749442 -1539220 + AluSp SINE Alu 1 308 -5 938 257 80 82 chr4 182749469 182749783 -1538879 + MLT1E3 LTR MaLR 3 317 -307 2380 102 0 0 chr4 182749783 182750088 -1538574 + AluSx SINE Alu 1 305 -7 938 257 80 82 chr4 182750088 182750395 -1538267 + MLT1E3 LTR MaLR 317 623 -1 1088 225 94 83 chr4 182751239 182751962 -1536700 + HAL1 LINE L1 1011 1741 -766 646 246 191 14 chr4 182752534 182752969 -1535693 + HAL1 LINE L1 1991 2502 -5 190 107 0 0 chr4 182753043 182753071 -1535591 + MIR SINE MIR 224 251 -11 21 0 0 0 chr4 182753098 182753119 -1535543 + AT_rich Low_complexity Low_complexity 1 21 0 845 176 0 0 chr4 182755471 182755602 -1533060 - FLAM_C SINE Alu -12 131 1 201 225 135 22 chr4 182756898 182756987 -1531675 + MIR SINE MIR 118 216 -46 785 250 16 0 chr4 182757681 182757865 -1530797 + MER5A DNA MER1_type 2 188 -1 21 0 0 0 chr4 182757913 182757934 -1530728 + AT_rich Low_complexity Low_complexity 1 21 0 1697 233 36 23 chr4 182759171 182759672 -1528990 + MLT1D LTR MaLR 1 623 -1 2184 87 21 7 chr4 182759843 182760131 -1528531 - AluY SINE Alu -19 292 1 288 120 0 0 chr4 182760425 182760475 -1528187 + (TA)n Simple_repeat Simple_repeat 1 50 0 219 133 0 0 chr4 182761071 182761116 -1527546 + (TG)n Simple_repeat Simple_repeat 1 45 0 1473 152 28 0 chr4 182764309 182764559 -1524103 - AluJb SINE Alu -18 294 38 2147 108 7 7 chr4 182766557 182766852 -1521810 - AluSq SINE Alu -18 295 1 333 311 74 41 chr4 182767805 182768351 -1520311 + L1ME LINE L1 5255 5575 -587 347 214 19 61 chr4 182770538 182770777 -1517885 + GA-rich Low_complexity Low_complexity 1 249 -380 2314 80 17 0 chr4 182770777 182771076 -1517586 + AluSq SINE Alu 1 304 -9 347 214 19 61 chr4 182771076 182771195 -1517467 + GA-rich Low_complexity Low_complexity 249 629 0 411 160 11 53 chr4 182771260 182771447 -1517215 + GA-rich Low_complexity Low_complexity 1 179 0 228 262 5 32 chr4 182771566 182771780 -1516882 + GA-rich Low_complexity Low_complexity 1 208 0 495 250 0 0 chr4 182773311 182773459 -1515203 + (TGGA)n Simple_repeat Simple_repeat 3 150 0 515 252 6 3 chr4 182773476 182773806 -1514856 + (TGGA)n Simple_repeat Simple_repeat 1 331 0 864 133 26 7 chr4 182774195 182774346 -1514316 + MER2 DNA MER2_type 49 202 -143 667 196 8 8 chr4 182774394 182774527 -1514135 - FLAM_A SINE Alu 0 133 1 269 282 13 13 chr4 182774530 182774608 -1514054 + MER2 DNA MER2_type 268 345 0 205 264 0 19 chr4 182775455 182775508 -1513154 - L2 LINE L2 -7 3306 3255 507 225 176 9 chr4 182775995 182776162 -1512500 + L2 LINE L2 1190 1404 -1910 1515 194 159 0 chr4 182776162 182776477 -1512185 + MLT1A1 LTR MaLR 1 365 0 507 225 176 9 chr4 182776477 182776531 -1512131 + L2 LINE L2 1404 1448 -1866 2257 236 37 10 chr4 182776615 182777208 -1511454 + MLT1E2 LTR MaLR 1 609 -17 2331 261 90 25 chr4 182777223 182778070 -1510592 + L2 LINE L2 1561 2462 -852 2174 320 86 26 chr4 182778841 182780702 -1507960 + ERVL LTR ERVL 3328 5284 -201 216 0 0 0 chr4 182782135 182782159 -1506503 + (GA)n Simple_repeat Simple_repeat 1 24 0 454 269 96 36 chr4 182782637 182782856 -1505806 + MIR SINE MIR 1 232 -30 24 53 0 0 chr4 182783271 182783309 -1505353 + AT_rich Low_complexity Low_complexity 1 38 0 264 306 0 24 chr4 182784000 182784085 -1504577 + CT-rich Low_complexity Low_complexity 4 86 0 331 345 7 36 chr4 182784409 182784548 -1504114 + MIR3 SINE MIR 20 154 -54 306 0 0 0 chr4 182784560 182784594 -1504068 + (TTA)n Simple_repeat Simple_repeat 3 36 0 3011 39 8 0 chr4 182784594 182784957 -1503705 - L1PA3 LINE L1 -18 6137 5772 228 86 0 0 chr4 182785768 182785803 -1502859 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 778 214 114 23 chr4 182786098 182786318 -1502344 + MIR SINE MIR 20 259 -3 196 279 139 8 chr4 182786319 182786441 -1502221 - MIR SINE MIR -41 221 84 191 232 18 0 chr4 182786470 182786526 -1502136 + CT-rich Low_complexity Low_complexity 5 61 0 570 360 70 29 chr4 182788036 182788492 -1500170 + L2 LINE L2 2839 3313 0 241 260 71 47 chr4 182788708 182788757 -1499905 - LTR67 LTR ERVL 0 557 511 1836 128 93 31 chr4 182788757 182789110 -1499552 - THE1C LTR MaLR 0 375 1 241 260 71 47 chr4 182789110 182789229 -1499433 - LTR67 LTR ERVL -46 511 385 240 195 78 39 chr4 182789488 182789565 -1499097 - MLT1G LTR MaLR -16 574 495 608 255 58 5 chr4 182789674 182789862 -1498800 - MLT1H LTR MaLR -305 244 47 927 202 0 0 chr4 182791401 182791840 -1496822 + (CA)n Simple_repeat Simple_repeat 1 439 0 37 52 0 0 chr4 182792105 182792163 -1496499 + AT_rich Low_complexity Low_complexity 1 58 0 183 129 0 0 chr4 182792979 182793010 -1495652 + (A)n Simple_repeat Simple_repeat 1 31 0 223 276 152 9 chr4 182793110 182793215 -1495447 + MIR SINE MIR 72 191 -71 24 0 0 0 chr4 182793632 182793656 -1495006 + AT_rich Low_complexity Low_complexity 1 24 0 321 338 84 14 chr4 182794582 182794795 -1493867 + L1ME4a LINE L1 610 837 -5282 500 333 87 15 chr4 182794854 182795118 -1493544 + L1ME4a LINE L1 914 1196 -4923 431 346 60 15 chr4 182795110 182795401 -1493261 + L1M4c LINE L1 1436 1832 -911 * 283 198 33 0 chr4 182795411 182795502 -1493160 + L1ME3 LINE L1 5281 5374 -788 1168 135 16 31 chr4 182795504 182795696 -1492966 + AluSg/x SINE Alu 121 309 -3 1276 224 52 161 chr4 182795696 182796074 -1492588 + L1ME3 LINE L1 5390 5625 -537 3481 131 13 2 chr4 182796074 182796595 -1492067 - MER1A DNA MER1_type 0 527 1 1276 224 52 161 chr4 182796595 182797074 -1491588 + L1ME3 LINE L1 5625 6154 -8 3688 199 28 29 chr4 182797180 182798107 -1490555 + L1MA9 LINE L1 5314 6239 -73 2267 99 10 0 chr4 182798218 182798512 -1490150 - AluSx SINE Alu -15 297 1 30 45 0 0 chr4 182798881 182798925 -1489737 + AT_rich Low_complexity Low_complexity 1 44 0 726 295 95 48 chr4 182798998 182799420 -1489242 + L1ME4a LINE L1 2253 2654 -3475 266 83 0 0 chr4 182799420 182799456 -1489206 + LTR8 LTR ERV1 549 584 -107 726 295 95 48 chr4 182799456 182800888 -1487774 + L1ME4a LINE L1 2654 4231 -1898 1461 166 3 124 chr4 182800927 182801265 -1487397 + AluSq SINE Alu 3 299 -4 572 287 87 34 chr4 182802044 182802213 -1486449 + L1ME4a LINE L1 4486 4645 -1484 2060 131 14 0 chr4 182802213 182802504 -1486158 + AluSx SINE Alu 1 295 -17 572 287 87 34 chr4 182802504 182803034 -1485628 + L1ME4a LINE L1 4645 5222 -907 259 312 55 0 chr4 182803146 182803255 -1485407 - MER20 DNA MER1_type -4 215 101 218 32 32 0 chr4 182804354 182804385 -1484277 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 272 351 221 15 chr4 182804386 182804711 -1483951 - L2 LINE L2 -25 3247 2856 409 276 194 46 chr4 182805920 182806137 -1482525 - MIR SINE MIR 0 262 14 942 199 6 0 chr4 182807930 182808106 -1480556 - MER58A DNA MER1_type -2 222 46 2237 102 3 3 chr4 182808111 182808405 -1480257 + AluSp SINE Alu 1 294 -19 22 0 0 0 chr4 182808405 182808427 -1480235 + AT_rich Low_complexity Low_complexity 1 22 0 489 298 167 8 chr4 182808466 182808718 -1479944 + L1ME4a LINE L1 5686 5977 -127 2084 123 98 25 chr4 182808935 182809334 -1479328 - MSTA LTR MaLR 0 428 1 856 263 9 5 chr4 182809998 182810211 -1478451 + MIR SINE MIR 5 218 -44 556 265 7 41 chr4 182811275 182811422 -1477240 - MER5A DNA MER1_type -3 186 45 489 320 89 43 chr4 182811715 182812178 -1476484 + MLT1K LTR MaLR 105 588 0 1655 164 116 3 chr4 182812853 182813182 -1475480 + MER47A DNA MER2_type 1 366 0 625 284 125 73 chr4 182813889 182814448 -1474214 - MLT1K LTR MaLR 0 588 1 21 0 0 0 chr4 182814806 182814827 -1473835 + AT_rich Low_complexity Low_complexity 1 21 0 1024 289 109 52 chr4 182817033 182818173 -1470489 + L1MEd LINE L1 4 1208 -4911 2287 116 3 3 chr4 182818948 182819259 -1469403 - AluSq SINE Alu -2 311 1 21 36 0 0 chr4 182819796 182819824 -1468838 + AT_rich Low_complexity Low_complexity 1 28 0 1953 215 46 82 chr4 182819912 182820072 -1468590 - L1MC4 LINE L1 0 8042 7878 663 21 21 11 chr4 182820072 182820166 -1468496 + (TAGA)n Simple_repeat Simple_repeat 3 97 0 1953 215 46 82 chr4 182820166 182820512 -1468150 - L1MC4 LINE L1 -164 7878 7565 4025 14 25 0 chr4 182820512 182820953 -1467709 - L1PA2 LINE L1 0 6155 5704 1953 215 46 82 chr4 182820953 182821143 -1467519 - L1MC4 LINE L1 -477 7565 7370 21 0 0 0 chr4 182822201 182822222 -1466440 + AT_rich Low_complexity Low_complexity 1 21 0 1718 197 0 0 chr4 182822490 182822789 -1465873 + AluJo SINE Alu 1 299 -13 732 200 69 28 chr4 182824695 182824840 -1463822 + FRAM SINE Alu 1 151 -15 851 219 52 0 chr4 182825073 182825265 -1463397 - MER20 DNA MER1_type -17 202 1 9489 31 3 0 chr4 182825582 182827419 -1461243 + L1PA4 LINE L1 4313 6155 0 490 198 23 23 chr4 182828103 182828280 -1460382 + GA-rich Low_complexity Low_complexity 1 177 0 273 306 9 9 chr4 182828492 182828603 -1460059 + T-rich Low_complexity Low_complexity 3 113 0 2066 86 50 0 chr4 182829559 182829839 -1458823 - AluSg SINE Alu -16 294 1 21 0 0 0 chr4 182829844 182829865 -1458797 + AT_rich Low_complexity Low_complexity 1 21 0 1242 167 0 34 chr4 182830141 182830380 -1458282 + MER46A DNA MER2_type 6 236 0 25 31 0 0 chr4 182830662 182830694 -1457968 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 182835168 182835189 -1453473 + AT_rich Low_complexity Low_complexity 1 21 0 1166 198 5 5 chr4 182840084 182840296 -1448366 + MER20 DNA MER1_type 1 212 -7 215 319 53 9 chr4 182841390 182841503 -1447159 + L2 LINE L2 2860 2977 -337 198 0 0 0 chr4 182843744 182843766 -1444896 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 198 0 0 0 chr4 182843814 182843836 -1444826 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 198 0 0 0 chr4 182843884 182843906 -1444756 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 198 0 0 0 chr4 182843954 182843976 -1444686 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 198 0 0 0 chr4 182844024 182844046 -1444616 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 198 0 0 0 chr4 182844094 182844116 -1444546 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 198 0 0 0 chr4 182844164 182844186 -1444476 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 198 0 0 0 chr4 182844234 182844256 -1444406 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 201 39 0 0 chr4 182844304 182844330 -1444332 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 198 0 0 0 chr4 182844378 182844400 -1444262 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 198 0 0 0 chr4 182844448 182844470 -1444192 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 234 0 0 0 chr4 182844518 182844544 -1444118 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 234 0 0 0 chr4 182844592 182844618 -1444044 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 234 0 0 0 chr4 182844666 182844692 -1443970 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 234 0 0 0 chr4 182844740 182844766 -1443896 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 270 0 0 0 chr4 182844814 182844844 -1443818 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 234 0 0 0 chr4 182844892 182844918 -1443744 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 234 0 0 0 chr4 182844966 182844992 -1443670 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 353 194 117 48 chr4 182845576 182845679 -1442983 + MER103 DNA DNA 8 117 -49 385 274 59 59 chr4 182848345 182848564 -1440098 - MIR SINE MIR -19 243 25 459 318 30 8 chr4 182850626 182850758 -1437904 + L2 LINE L2 3179 3313 0 294 29 0 0 chr4 182856347 182856382 -1432280 + (CA)n Simple_repeat Simple_repeat 1 35 0 1856 132 56 0 chr4 182857592 182857880 -1430782 + AluSx SINE Alu 1 304 -8 2088 114 10 3 chr4 182859456 182859754 -1428908 + AluSx SINE Alu 1 300 -12 591 306 0 5 chr4 182860789 182860988 -1427674 - MER3 DNA MER1_type -11 198 1 224 352 45 0 chr4 182861776 182861864 -1426798 - MIR SINE MIR -84 124 33 510 17 0 0 chr4 182863095 182863154 -1425508 + (TA)n Simple_repeat Simple_repeat 1 59 0 193 296 37 49 chr4 182863245 182863326 -1425336 - MIR SINE MIR -87 121 41 1840 146 7 0 chr4 182863421 182863696 -1424966 + AluSx SINE Alu 26 302 -10 333 0 0 0 chr4 182863701 182863738 -1424924 + (CA)n Simple_repeat Simple_repeat 2 38 0 804 201 67 6 chr4 182864127 182864291 -1424371 + MER3 DNA MER1_type 2 128 -81 531 290 98 27 chr4 182864965 182865189 -1423473 - MIR SINE MIR -5 257 18 23 33 0 0 chr4 182866006 182866036 -1422626 + AT_rich Low_complexity Low_complexity 1 30 0 271 337 20 10 chr4 182866283 182866384 -1422278 - MIR3 SINE MIR -19 189 88 621 282 102 43 chr4 182867095 182867489 -1421173 + MLT1C LTR MaLR 1 417 -50 520 145 24 0 chr4 182867536 182867619 -1421043 - L1MA10 LINE L1 -8 6326 6242 207 164 44 25 chr4 182868750 182868909 -1419753 + (TTAA)n Simple_repeat Simple_repeat 4 165 0 268 323 92 18 chr4 182869701 182869865 -1418797 - MIR3 SINE MIR -11 197 22 1116 221 81 39 chr4 182871332 182871617 -1417045 + MER58B DNA MER1_type 45 341 0 1708 172 16 13 chr4 182872360 182872668 -1415994 + AluJo SINE Alu 1 309 -3 2071 127 14 0 chr4 182873173 182873465 -1415197 - AluSx SINE Alu -16 296 1 242 189 68 27 chr4 182873492 182873566 -1415096 + L1MC4a LINE L1 5864 5940 -1868 1262 200 169 83 chr4 182873629 182874133 -1414529 - MER74A LTR ERVL -11 547 1 615 260 40 0 chr4 182874673 182874850 -1413812 + L1MEc LINE L1 60 243 -6153 1609 258 26 34 chr4 182874857 182875393 -1413269 + L1ME1 LINE L1 5630 6161 -5 1721 181 46 49 chr4 182876706 182877055 -1411607 + MER7A DNA MER2_type 1 346 0 180 294 0 20 chr4 182877788 182877839 -1410823 - MIR3 SINE MIR -148 60 11 2964 161 68 149 chr4 182878865 182879852 -1408810 + MER21A LTR ERV1 16 922 -9 2493 55 0 0 chr4 182880574 182880866 -1407796 - AluY SINE Alu -17 294 3 446 235 204 12 chr4 182881443 182881605 -1407057 + MIR SINE MIR 68 260 -2 202 291 40 53 chr4 182881612 182881847 -1406815 - MIR3 SINE MIR -33 229 4 208 342 26 0 chr4 182882069 182882145 -1406517 + L2 LINE L2 3149 3226 -46 3143 25 12 0 chr4 182882961 182883475 -1405187 - L1P2 LINE L1 -534 5620 5103 3918 47 0 0 chr4 182883475 182883949 -1404713 + L1PA5 LINE L1 5697 6172 0 594 305 42 5 chr4 182884438 182884628 -1404034 - MIR SINE MIR -13 249 53 291 246 74 135 chr4 182885420 182885635 -1403027 - MIR SINE MIR -48 214 13 963 217 78 36 chr4 182888507 182888788 -1399874 + L1MC3 LINE L1 7455 7747 -38 23 54 0 0 chr4 182889016 182889053 -1399609 + AT_rich Low_complexity Low_complexity 1 37 0 2395 84 3 3 chr4 182889147 182889457 -1399205 + AluSq SINE Alu 1 310 -3 203 0 37 0 chr4 182889535 182889562 -1399100 + (TG)n Simple_repeat Simple_repeat 2 29 0 26 0 0 0 chr4 182889933 182889959 -1398703 + AT_rich Low_complexity Low_complexity 1 26 0 609 271 61 11 chr4 182890333 182890514 -1398148 - MIR SINE MIR -50 212 23 180 296 139 26 chr4 182891863 182891978 -1396684 - MIR SINE MIR -49 213 86 242 299 23 35 chr4 182892064 182892151 -1396511 - MIR SINE MIR -149 113 28 2071 150 0 0 chr4 182892483 182892789 -1395873 + AluJb SINE Alu 1 306 -6 882 159 88 6 chr4 182893037 182893207 -1395455 + AluSg/x SINE Alu 122 305 -7 1390 154 97 30 chr4 182893209 182893476 -1395186 + AluJb SINE Alu 1 285 -27 359 117 0 13 chr4 182893476 182893553 -1395109 + (CA)n Simple_repeat Simple_repeat 1 76 0 24 0 0 0 chr4 182894129 182894153 -1394509 + AT_rich Low_complexity Low_complexity 1 24 0 525 185 11 0 chr4 182896048 182896140 -1392522 + AluJ/FLAM SINE Alu 1 93 -219 46 19 0 0 chr4 182896147 182896200 -1392462 + AT_rich Low_complexity Low_complexity 1 53 0 261 218 63 7 chr4 182896258 182896400 -1392262 + (TA)n Simple_repeat Simple_repeat 1 150 0 2456 103 9 0 chr4 182896428 182896767 -1391895 + L1PA8A LINE L1 5500 5841 -290 852 70 62 39 chr4 182896825 182896954 -1391708 + AluY SINE Alu 1 132 -179 1629 42 0 5 chr4 182896976 182897168 -1391494 + AluY SINE Alu 116 306 -5 455 247 82 57 chr4 182898383 182898541 -1390121 - MIR3 SINE MIR -23 185 24 191 295 16 0 chr4 182898905 182898966 -1389696 + MIR SINE MIR 59 120 -142 2387 99 0 0 chr4 182899969 182900273 -1388389 + AluSx SINE Alu 1 304 -8 223 313 17 43 chr4 182901093 182901208 -1387454 + L2 LINE L2 3202 3313 0 355 271 89 44 chr4 182905037 182905240 -1383422 + L1ME LINE L1 5485 5696 -425 867 162 187 0 chr4 182905258 182905456 -1383206 + MER46A DNA MER2_type 1 235 -1 1986 114 32 4 chr4 182908146 182908426 -1380236 + AluSx SINE Alu 7 294 -18 970 203 90 0 chr4 182908502 182908758 -1379904 + MER33 DNA MER1_type 46 324 0 1746 159 13 35 chr4 182909246 182909560 -1379102 + AluJo SINE Alu 4 310 -2 2366 8 0 0 chr4 182910029 182910308 -1378354 - AluY SINE Alu 0 307 29 801 254 118 23 chr4 182911044 182911477 -1377185 + MLT1H LTR MaLR 71 544 -5 2056 121 4 0 chr4 182912405 182912721 -1375941 + AluSx SINE Alu 1 317 0 208 296 185 0 chr4 182913313 182913421 -1375241 - L2 LINE L2 -1 3312 3185 25 31 0 0 chr4 182913453 182913485 -1375177 + AT_rich Low_complexity Low_complexity 1 32 0 387 0 0 0 chr4 182913485 182913528 -1375134 + (CA)n Simple_repeat Simple_repeat 2 44 0 2091 118 3 0 chr4 182913528 182913815 -1374847 - AluSq SINE Alu -25 288 1 1779 167 3 20 chr4 182914466 182914759 -1373903 + AluSx SINE Alu 1 288 -24 225 0 0 0 chr4 182914759 182914784 -1373878 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 639 226 156 10 chr4 182914959 182915158 -1373504 - MER8 DNA MER2_type -8 231 4 212 273 0 0 chr4 182915463 182915507 -1373155 + (CAT)n Simple_repeat Simple_repeat 3 46 0 466 276 111 0 chr4 182918404 182918585 -1370077 + MIR SINE MIR 62 262 0 1850 122 30 26 chr4 182922667 182922970 -1365692 - AluJo SINE Alu -8 304 1 213 297 68 25 chr4 182923303 182923421 -1365241 - L2 LINE L2 -16 3256 3134 224 310 76 19 chr4 182923584 182923742 -1364920 - MIR SINE MIR -63 199 33 2224 106 0 7 chr4 182929363 182929665 -1358997 + AluSx SINE Alu 1 300 -12 547 248 68 24 chr4 182930150 182930356 -1358306 - L2 LINE L2 -1 3312 3098 434 265 0 60 chr4 182930457 182930608 -1358054 - MER20 DNA MER1_type -76 143 2 2846 203 122 15 chr4 182930714 182931386 -1357276 - L1MC3 LINE L1 0 7785 7031 1480 132 34 128 chr4 182931386 182931713 -1356949 - AluJb SINE Alu -6 296 1 2846 203 122 15 chr4 182931713 182931755 -1356907 - L1MC3 LINE L1 -754 7031 6995 600 284 169 40 chr4 182931768 182932466 -1356196 - L2 LINE L2 -529 2785 1998 2299 77 0 7 chr4 182932526 182932824 -1355838 + AluSc SINE Alu 1 296 -13 1714 140 40 4 chr4 182934176 182934448 -1354214 - AluJb SINE Alu -30 282 1 183 42 0 0 chr4 182934508 182934532 -1354130 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1626 157 72 0 chr4 182934534 182934796 -1353866 - AluSx SINE Alu -30 282 2 2387 67 0 3 chr4 182936117 182936428 -1352234 + AluSc SINE Alu 1 310 0 367 247 118 0 chr4 182937110 182937203 -1351459 - MER2 DNA MER2_type -240 105 2 280 340 82 13 chr4 182937307 182937466 -1351196 + MIR3 SINE MIR 16 185 -23 343 318 155 43 chr4 182938220 182938497 -1350165 + L2 LINE L2 2934 3241 -31 1984 113 38 0 chr4 182939575 182939868 -1348794 - AluSp SINE Alu -9 304 1 26 0 0 0 chr4 182941356 182941382 -1347280 + GC_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr4 182941556 182941591 -1347071 + GC_rich Low_complexity Low_complexity 1 35 0 31 0 0 0 chr4 182941619 182941650 -1347012 + GC_rich Low_complexity Low_complexity 1 31 0 216 0 0 0 chr4 182941926 182941950 -1346712 + (A)n Simple_repeat Simple_repeat 1 24 0 203 263 138 0 chr4 182945577 182945657 -1343005 + MIR SINE MIR 82 172 -90 239 108 0 0 chr4 182945936 182945973 -1342689 - Alu SINE Alu -90 212 176 551 243 112 6 chr4 182946469 182946638 -1342024 - MER3 DNA MER1_type -16 193 7 238 213 0 0 chr4 182946761 182946808 -1341854 - L2 LINE L2 0 3313 3267 2295 96 3 0 chr4 182947216 182947509 -1341153 + AluSx SINE Alu 1 294 -18 2256 111 0 3 chr4 182948176 182948473 -1340189 + AluSx SINE Alu 1 296 -16 341 296 30 35 chr4 182948575 182948744 -1339918 - MIR SINE MIR -10 252 85 280 285 163 8 chr4 182949512 182949635 -1339027 + MLT1L LTR MaLR 149 290 -325 1503 223 46 46 chr4 182950120 182950510 -1338152 - MLT1B LTR MaLR 0 390 1 2244 62 0 81 chr4 182950948 182951270 -1337392 + AluY SINE Alu 1 296 -15 828 223 36 30 chr4 182951488 182951822 -1336840 - MER31A LTR ERV1 -32 453 1 1351 233 118 40 chr4 182952184 182952317 -1336345 + MLT1F LTR MaLR 16 137 -405 1760 218 58 8 chr4 182952317 182952694 -1335968 - MSTD LTR MaLR 0 396 1 1351 233 118 40 chr4 182952694 182953041 -1335621 + MLT1F LTR MaLR 137 534 -8 823 175 120 6 chr4 182953198 182953381 -1335281 + MER3 DNA MER1_type 6 209 0 229 282 28 0 chr4 182953326 182953397 -1335265 - MER3 DNA MER1_type -105 104 32 * 1983 106 0 11 chr4 182954059 182954324 -1334338 - AluSx SINE Alu -27 285 24 331 301 66 35 chr4 182954509 182954735 -1333927 + L1ME3A LINE L1 4935 5167 -979 1905 103 16 0 chr4 182954820 182955072 -1333590 + AluSx SINE Alu 56 311 -1 1453 212 82 25 chr4 182955188 182955589 -1333073 + MLT1C LTR MaLR 44 467 0 1641 177 3 14 chr4 182955607 182955901 -1332761 - AluJb SINE Alu -21 291 1 901 289 78 40 chr4 182955902 182956379 -1332283 + L1ME3A LINE L1 5389 5883 -287 2092 105 3 33 chr4 182956464 182956768 -1331894 - AluSp SINE Alu -5 308 14 2044 125 0 14 chr4 182956943 182957286 -1331376 + AluSx SINE Alu 1 339 0 293 200 0 18 chr4 182957842 182957897 -1330765 + LTR33 LTR ERVL 468 521 0 466 258 23 0 chr4 182958044 182958176 -1330486 + MER5A DNA MER1_type 54 188 -1 280 297 181 17 chr4 182958193 182958425 -1330237 - LTR33 LTR ERVL -115 406 137 2032 108 0 0 chr4 182958915 182959183 -1329479 - AluSp SINE Alu -1 312 45 532 108 0 0 chr4 182959183 182959257 -1329405 - AluS SINE Alu -238 75 2 1909 165 0 0 chr4 182959839 182960130 -1328532 - AluJb SINE Alu -21 291 1 396 242 181 0 chr4 182961618 182961767 -1326895 + MIR SINE MIR 67 242 -20 700 241 5 31 chr4 182962465 182962656 -1326006 - MER5A DNA MER1_type -2 187 2 411 296 34 34 chr4 182962778 182962984 -1325678 + MER63A DNA MER1_type 5 210 0 924 171 39 17 chr4 182963159 182963340 -1325322 - LTR32 LTR ERVL 0 471 287 1687 162 31 3 chr4 182963444 182963734 -1324928 - LTR32 LTR ERVL -159 312 15 312 304 22 36 chr4 182963774 182963912 -1324750 + L1ME LINE L1 1 136 -5934 1960 150 10 7 chr4 182964128 182964428 -1324234 - AluSx SINE Alu -11 301 1 297 171 98 37 chr4 182964478 182964560 -1324102 + MLT1J2 LTR MaLR 364 450 0 1641 137 46 42 chr4 182964866 182965150 -1323512 - AluJo SINE Alu -24 288 4 263 284 21 46 chr4 182965836 182965976 -1322686 + MER5B DNA MER1_type 4 151 -38 4191 105 5 3 chr4 182966022 182966620 -1322042 - L1PA13 LINE L1 0 6163 5565 195 69 0 0 chr4 182967167 182967196 -1321466 + (TG)n Simple_repeat Simple_repeat 1 29 0 1623 246 87 78 chr4 182967900 182968809 -1319853 + L1MC5 LINE L1 6772 7694 -267 2267 100 3 0 chr4 182968809 182969100 -1319562 - AluSx SINE Alu -20 292 1 1623 246 87 78 chr4 182969100 182969316 -1319346 + L1MC5 LINE L1 7694 7907 -54 531 280 63 6 chr4 182969932 182970107 -1318555 + MIR3 SINE MIR 21 205 -3 250 364 0 0 chr4 182970275 182970393 -1318269 - MIR SINE MIR -55 207 90 2308 97 23 0 chr4 182971298 182971597 -1317065 - AluSq SINE Alu -7 306 1 186 103 0 0 chr4 182971755 182971784 -1316878 + (TTTTTG)n Simple_repeat Simple_repeat 1 29 0 30 0 0 0 chr4 182972757 182972787 -1315875 + AT_rich Low_complexity Low_complexity 1 30 0 1045 177 33 33 chr4 182972995 182973210 -1315452 - MER20 DNA MER1_type -4 215 1 184 246 66 16 chr4 182973276 182973337 -1315325 + L2 LINE L2 3209 3272 0 278 295 158 26 chr4 182973501 182973735 -1314927 + L2 LINE L2 2109 2373 -941 3470 60 34 2 chr4 182974149 182974586 -1314076 - L1PA7 LINE L1 0 6154 5704 324 296 126 76 chr4 182974629 182974906 -1313756 + L2 LINE L2 2945 3235 -37 239 172 156 16 chr4 182974914 182974978 -1313684 + L1ME4a LINE L1 5910 5982 -139 767 145 73 0 chr4 182975236 182975360 -1313302 - FLAM_C SINE Alu 0 133 1 23 0 0 0 chr4 182975758 182975781 -1312881 + AT_rich Low_complexity Low_complexity 1 23 0 2271 119 0 0 chr4 182976093 182976404 -1312258 - AluSx SINE Alu -1 311 1 2691 110 3 3 chr4 182976697 182977052 -1311610 - THE1A LTR MaLR 0 355 1 334 255 65 52 chr4 182977073 182977210 -1311452 + MIR SINE MIR 52 191 -17 180 0 0 0 chr4 182977555 182977575 -1311087 + (A)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr4 182978272 182978294 -1310368 + AT_rich Low_complexity Low_complexity 1 22 0 336 281 11 0 chr4 182979217 182979306 -1309356 - MIR SINE MIR 0 262 173 1931 160 10 0 chr4 182979792 182980085 -1308577 - AluJb SINE Alu -16 296 1 2240 113 0 0 chr4 182981544 182981890 -1306772 + AluSx SINE Alu 1 346 0 1485 161 99 4 chr4 182982277 182982550 -1306112 - AluJo SINE Alu -11 301 3 2166 104 4 0 chr4 182984173 182984475 -1304187 + AluSx SINE Alu 1 303 0 1904 135 0 45 chr4 182984958 182985270 -1303392 - AluJb SINE Alu -14 298 1 334 273 91 33 chr4 182985608 182985805 -1302857 + MLT1J LTR MaLR 9 175 -271 11165 27 10 0 chr4 182985819 182987821 -1300841 + L1PA4 LINE L1 4145 6155 0 4433 226 89 21 chr4 182987941 182989153 -1299509 + Charlie1a DNA MER1_type 1 1295 -160 1793 229 59 45 chr4 182989153 182989642 -1299020 + MLT1D LTR MaLR 1 496 -9 568 211 106 12 chr4 182989643 182989804 -1298858 + Charlie1a DNA MER1_type 1280 1455 0 454 276 31 47 chr4 182989806 182989998 -1298664 + MLT1J LTR MaLR 323 511 0 182 332 16 45 chr4 182990408 182990553 -1298109 - MIR SINE MIR -65 143 50 439 291 14 14 chr4 182991676 182991824 -1296838 + MLT1J1 LTR MaLR 233 380 -66 2281 107 3 0 chr4 182992436 182992745 -1295917 - AluSx SINE Alu -2 310 1 204 326 21 56 chr4 182993674 182993818 -1294844 + L2 LINE L2 2872 3010 -262 287 234 149 28 chr4 182993970 182994077 -1294585 + MIR SINE MIR 51 170 -92 2205 104 0 3 chr4 182994445 182994734 -1293928 - AluSx SINE Alu -24 288 1 258 61 0 0 chr4 182996490 182996523 -1292139 + THE1C-int LTR MaLR 785 817 -763 * 2987 108 7 12 chr4 182996521 182996949 -1291713 + THE1C-int LTR MaLR 1155 1580 0 1943 146 56 61 chr4 182996949 182997326 -1291336 + THE1C LTR MaLR 1 375 0 2016 122 31 0 chr4 182997556 182997843 -1290819 - AluSx SINE Alu -16 296 1 181 222 32 79 chr4 182997890 182997953 -1290709 - L2 LINE L2 0 3272 3213 26 50 0 0 chr4 182999572 182999612 -1289050 + AT_rich Low_complexity Low_complexity 1 40 0 27 49 0 0 chr4 182999787 182999828 -1288834 + AT_rich Low_complexity Low_complexity 1 41 0 1709 176 28 42 chr4 183000086 183000443 -1288219 + MLT1A1 LTR MaLR 1 352 -13 204 316 114 0 chr4 183001208 183001287 -1287375 - L2 LINE L2 0 3313 3226 2245 81 3 7 chr4 183001523 183001818 -1286844 + AluSc SINE Alu 1 294 -15 303 209 88 33 chr4 183001904 183001995 -1286667 - MLT1L LTR MaLR -517 98 3 2939 152 20 48 chr4 183002041 183002599 -1286063 - L1MA9 LINE L1 0 6312 5771 1444 190 56 9 chr4 183002599 183002920 -1285742 - L1MA9 LINE L1 -38 6274 5939 2496 148 18 28 chr4 183002939 183003230 -1285432 - L1MA9 LINE L1 -528 5763 5494 2091 104 31 7 chr4 183003230 183003519 -1285143 - AluSq SINE Alu -17 296 1 2496 148 18 28 chr4 183003519 183003721 -1284941 - L1MA9 LINE L1 -797 5494 5291 1289 199 20 92 chr4 183003721 183004113 -1284549 - MLT1A1 LTR MaLR 0 365 2 2318 117 0 0 chr4 183004431 183004739 -1283923 - AluSx SINE Alu -4 308 1 184 315 148 55 chr4 183004752 183005260 -1283402 - L2 LINE L2 -609 2705 2151 2189 111 3 0 chr4 183005786 183006083 -1282579 - AluSq SINE Alu -15 298 1 23 0 0 0 chr4 183006177 183006200 -1282462 + AT_rich Low_complexity Low_complexity 1 23 0 279 255 60 30 chr4 183007996 183008109 -1280553 - MER5A DNA MER1_type -35 154 29 381 254 9 9 chr4 183008524 183008634 -1280028 - L1ME LINE L1 -436 5685 5576 745 161 42 0 chr4 183008780 183008898 -1279764 + FLAM_C SINE Alu 2 124 -19 370 265 22 35 chr4 183008962 183009121 -1279541 - L1P3 LINE L1 -525 5647 5495 2042 68 22 96 chr4 183009130 183009452 -1279210 - AluYb8 SINE Alu -4 314 17 2178 82 0 7 chr4 183009758 183010040 -1278622 - AluY SINE Alu -18 293 14 213 315 56 46 chr4 183010126 183010234 -1278428 + L2 LINE L2 3203 3311 -2 288 342 13 0 chr4 183010295 183010374 -1278288 - L2 LINE L2 -2 3270 3191 1287 190 75 25 chr4 183010684 183010963 -1277699 - LTR10B LTR ERV1 0 547 300 1117 239 57 113 chr4 183012294 183013002 -1275660 - L1MC5 LINE L1 -44 7917 7250 994 226 67 0 chr4 183013932 183014140 -1274522 - MER58A DNA MER1_type 0 224 3 2153 104 7 0 chr4 183014818 183015097 -1273565 + AluSx SINE Alu 21 301 -11 248 262 0 0 chr4 183016622 183016683 -1271979 + (TA)n Simple_repeat Simple_repeat 1 61 0 6652 138 90 17 chr4 183017326 183018472 -1270190 - Tigger3b DNA MER2_type 0 1231 2 27 0 0 0 chr4 183018507 183018534 -1270128 + AT_rich Low_complexity Low_complexity 1 27 0 1436 255 59 13 chr4 183018551 183019025 -1269637 - L1ME3A LINE L1 -36 6134 5639 347 282 44 6 chr4 183019019 183019204 -1269458 - L1M4 LINE L1 -5423 1402 1028 * 27 0 0 0 chr4 183019943 183019970 -1268692 + AT_rich Low_complexity Low_complexity 1 27 0 215 292 58 60 chr4 183020117 183020301 -1268361 - MIR SINE MIR -56 152 4 4869 156 49 11 chr4 183020474 183021270 -1267392 - LTR1B LTR ERV1 0 826 1 228 279 36 54 chr4 183021846 183021957 -1266705 + MER102a DNA MER1_type 222 330 0 762 242 6 16 chr4 183021970 183022152 -1266510 - AluJo SINE Alu -11 301 122 401 337 72 60 chr4 183022371 183022507 -1266155 + L3 LINE CR1 1303 1446 -131 1676 182 4 0 chr4 183022507 183022787 -1265875 + AluJb SINE Alu 3 327 0 235 23 45 23 chr4 183022787 183022831 -1265831 + (CAAAA)n Simple_repeat Simple_repeat 2 155 0 401 337 72 60 chr4 183022831 183022942 -1265720 + L3 LINE CR1 1446 1554 -23 1962 76 19 95 chr4 183023924 183024241 -1264421 - AluYb8 SINE Alu -9 309 17 1392 105 62 9 chr4 183024377 183024587 -1264075 - L1PA8 LINE L1 0 6172 5952 242 333 117 12 chr4 183024965 183025136 -1263526 + L1ME LINE L1 5597 5785 -336 291 360 27 0 chr4 183025173 183025284 -1263378 + L2 LINE L2 3192 3305 -8 1300 168 61 109 chr4 183025288 183025775 -1262887 - MER66A LTR ERV1 -17 461 97 808 285 12 16 chr4 183025825 183026074 -1262588 - MIR SINE MIR -2 260 13 1679 184 7 10 chr4 183026255 183026554 -1262108 + AluJo SINE Alu 1 298 -14 2494 78 0 0 chr4 183027061 183027370 -1261292 - AluSg SINE Alu -1 309 1 1391 222 73 31 chr4 183027617 183028090 -1260572 - MER39 LTR ERV1 0 707 5 2289 106 3 0 chr4 183028319 183028620 -1260042 + AluSg SINE Alu 1 302 -8 256 340 39 0 chr4 183028919 183029022 -1259640 - MIR SINE MIR -49 213 107 2192 135 0 0 chr4 183030066 183030425 -1258237 - AluSx SINE Alu 0 359 1 195 196 39 0 chr4 183032304 183032355 -1256307 + L2 LINE L2 3261 3313 0 1060 295 120 28 chr4 183034659 183036325 -1252337 - L1ME3 LINE L1 -296 5866 4038 242 250 0 0 chr4 183036958 183037010 -1251652 - LTR67 LTR ERVL -177 380 329 26 50 0 0 chr4 183037034 183037074 -1251588 + AT_rich Low_complexity Low_complexity 1 40 0 3325 167 14 42 chr4 183037079 183037720 -1250942 - L1PB4 LINE L1 0 6156 5534 1457 155 55 10 chr4 183038097 183038387 -1250275 + AluJo SINE Alu 9 311 -1 1005 96 13 13 chr4 183040274 183040430 -1248232 + AluY SINE Alu 146 301 -10 360 305 0 14 chr4 183040527 183040668 -1247994 + CT-rich Low_complexity Low_complexity 2 140 0 6174 141 237 31 chr4 183041352 183042758 -1245904 + pTR5 LTR ERV1 743 2438 0 378 182 0 0 chr4 183042784 183042850 -1245812 - MADE1 DNA Mariner -14 66 1 245 283 43 91 chr4 183042852 183043039 -1245623 - MLT1J LTR MaLR -104 407 230 184 383 21 47 chr4 183043295 183043488 -1245174 + L2 LINE L2 2455 2642 -672 653 208 35 66 chr4 183044127 183044324 -1244338 - MIR SINE MIR -35 227 37 251 272 0 79 chr4 183044416 183044530 -1244132 - MIR SINE MIR -56 206 102 301 328 67 0 chr4 183044530 183044649 -1244013 - MIR3 SINE MIR -6 202 76 323 271 93 16 chr4 183044691 183044820 -1243842 + MIR SINE MIR 64 202 -60 344 365 6 12 chr4 183045485 183045652 -1243010 - MIR SINE MIR -20 242 77 615 271 86 43 chr4 183045797 183046100 -1242562 - HAL1 LINE L1 -17 2490 2175 2042 218 95 0 chr4 183046171 183046643 -1242019 + LTR53 LTR ERVL 3 519 0 1564 242 67 26 chr4 183046807 183047271 -1241391 - HAL1 LINE L1 -845 1662 1169 1788 137 68 3 chr4 183047271 183047564 -1241098 - AluSx SINE Alu 0 312 1 1564 242 67 26 chr4 183047564 183047670 -1240992 - HAL1 LINE L1 -1338 1169 1069 408 263 75 19 chr4 183047694 183047854 -1240808 - HAL1 LINE L1 -1706 801 633 254 266 12 130 chr4 183047936 183048105 -1240557 - HAL1 LINE L1 -2311 196 48 378 226 44 36 chr4 183048597 183048734 -1239928 - L1ME4a LINE L1 -15 6106 5969 2246 107 0 19 chr4 183049049 183049368 -1239294 - AluSp SINE Alu 0 313 1 3934 21 0 0 chr4 183049457 183049888 -1238774 + L1PA2 LINE L1 5721 6151 -4 238 87 43 0 chr4 183050373 183050419 -1238243 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 187 388 60 0 chr4 183050446 183050513 -1238149 + L2 LINE L2 3198 3268 -4 1777 148 7 20 chr4 183050941 183051239 -1237423 + AluSx SINE Alu 1 294 -18 1914 153 7 0 chr4 183051672 183051959 -1236703 + AluSx SINE Alu 1 289 -23 281 276 0 82 chr4 183052631 183052729 -1235933 - MIR SINE MIR -78 130 41 2359 96 7 0 chr4 183052818 183053121 -1235541 - AluSc SINE Alu -4 305 1 207 397 26 45 chr4 183056147 183056303 -1232359 - L3 LINE CR1 0 1577 1425 641 233 108 15 chr4 183056303 183056652 -1232010 - MLT1C LTR MaLR 0 467 81 227 100 0 25 chr4 183056652 183056692 -1231970 + (TTTC)n Simple_repeat Simple_repeat 4 42 0 2122 115 6 34 chr4 183056699 183057199 -1231463 - AluSp SINE Alu 0 313 1 346 180 33 53 chr4 183057199 183057293 -1231369 - MLT1D LTR MaLR -295 95 2 236 294 49 29 chr4 183057784 183057886 -1230776 - L3 LINE CR1 -215 1362 1259 2350 88 0 3 chr4 183057934 183058229 -1230433 + AluSg SINE Alu 1 294 -16 2380 46 0 17 chr4 183058625 183058927 -1229735 - AluY SINE Alu -14 297 1 346 303 111 11 chr4 183060813 183061084 -1227578 - L1MC4a LINE L1 -1887 5921 5624 21 36 0 0 chr4 183061647 183061675 -1226987 + AT_rich Low_complexity Low_complexity 1 28 0 2230 94 3 0 chr4 183063065 183063351 -1225311 - AluSp SINE Alu -15 298 12 193 194 16 16 chr4 183063457 183063519 -1225143 + CT-rich Low_complexity Low_complexity 2 63 0 180 0 0 0 chr4 183064433 183064453 -1224209 + (T)n Simple_repeat Simple_repeat 1 20 0 1855 154 7 10 chr4 183065444 183065743 -1222919 + AluJb SINE Alu 5 302 -10 973 203 0 0 chr4 183065745 183065908 -1222754 + AluJo/FRAM SINE Alu 136 298 -14 345 207 101 69 chr4 183066158 183066289 -1222373 + MIR SINE MIR 55 191 -63 233 349 54 76 chr4 183069139 183069454 -1219208 - L2 LINE L2 -89 3183 2876 1243 66 0 0 chr4 183069535 183069687 -1218975 - AluY SINE Alu -4 307 156 293 274 32 114 chr4 183069822 183070041 -1218621 - MIR SINE MIR -5 257 57 1689 215 79 16 chr4 183073091 183073602 -1215060 + MER39 LTR ERV1 11 707 0 21 36 0 0 chr4 183073620 183073648 -1215014 + AT_rich Low_complexity Low_complexity 1 28 0 309 26 0 0 chr4 183073668 183073706 -1214956 + (TA)n Simple_repeat Simple_repeat 1 38 0 2196 110 7 3 chr4 183074546 183074845 -1213817 - AluSx SINE Alu -12 300 1 533 261 130 5 chr4 183076305 183076489 -1212173 + MIR SINE MIR 46 252 -10 281 143 0 0 chr4 183076871 183076920 -1211742 + (TCCC)n Simple_repeat Simple_repeat 2 50 0 648 93 0 10 chr4 183076921 183077018 -1211644 + MER4A LTR ERV1 3 98 -566 1644 139 17 24 chr4 183077058 183077352 -1211310 + MER4A LTR ERV1 372 663 -1 198 0 0 0 chr4 183077352 183077374 -1211288 + (TTCC)n Simple_repeat Simple_repeat 1 22 0 1169 23 0 0 chr4 183077628 183077760 -1210902 + AluY SINE Alu 1 132 -179 2362 41 7 0 chr4 183077763 183078056 -1210606 + AluY SINE Alu 1 295 -16 27 49 0 0 chr4 183079505 183079546 -1209116 + AT_rich Low_complexity Low_complexity 1 41 0 1891 204 29 7 chr4 183080625 183081072 -1207590 + L1MC1 LINE L1 5873 6329 -4 221 95 0 24 chr4 183081084 183081126 -1207536 + (TA)n Simple_repeat Simple_repeat 1 41 0 23 54 0 0 chr4 183082812 183082849 -1205813 + AT_rich Low_complexity Low_complexity 1 37 0 231 208 14 28 chr4 183083239 183083311 -1205351 + (TA)n Simple_repeat Simple_repeat 1 71 0 801 192 0 0 chr4 183083966 183084291 -1204371 + (TG)n Simple_repeat Simple_repeat 1 325 0 1151 136 24 5 chr4 183084431 183084637 -1204025 + Tigger2 DNA MER2_type 1 210 -2508 743 173 39 28 chr4 183084606 183084785 -1203877 + Tigger2 DNA MER2_type 2538 2718 0 * 305 172 74 16 chr4 183084788 183084910 -1203752 + (TA)n Simple_repeat Simple_repeat 1 129 0 294 128 39 49 chr4 183085012 183085114 -1203548 + (TTATA)n Simple_repeat Simple_repeat 3 103 0 208 189 27 0 chr4 183085139 183085213 -1203449 + (TA)n Simple_repeat Simple_repeat 1 76 0 348 146 73 0 chr4 183085246 183085410 -1203252 + (TA)n Simple_repeat Simple_repeat 1 176 0 310 222 71 20 chr4 183085454 183085553 -1203109 - L1MC4 LINE L1 -1340 6702 6599 2210 119 0 3 chr4 183085601 183085896 -1202766 - AluSx SINE Alu -18 294 1 32 86 0 0 chr4 183087199 183087280 -1201382 + AT_rich Low_complexity Low_complexity 1 81 0 2488 81 0 0 chr4 183087946 183088256 -1200406 - AluSg SINE Alu 0 310 1 2466 53 3 0 chr4 183088957 183089259 -1199403 + AluY SINE Alu 1 303 -8 806 191 129 21 chr4 183090425 183090619 -1198043 - MER20 DNA MER1_type -3 216 2 467 277 48 48 chr4 183090917 183091289 -1197373 - LTR16A1 LTR ERVL -59 398 27 3378 200 123 97 chr4 183091790 183092167 -1196495 - Charlie1a DNA MER1_type -1306 1455 1090 2014 93 7 14 chr4 183092167 183092469 -1196193 - AluSc SINE Alu 0 300 1 3378 200 123 97 chr4 183092469 183093265 -1195397 - Charlie1a DNA MER1_type -1671 1090 234 212 86 29 0 chr4 183093265 183093300 -1195362 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 3378 200 123 97 chr4 183093300 183093541 -1195121 - Charlie1a DNA MER1_type -2527 234 1 913 185 7 0 chr4 183095245 183095391 -1193271 - AluJ SINE Alu -37 275 129 228 163 0 0 chr4 183095521 183095564 -1193098 + (TA)n Simple_repeat Simple_repeat 2 44 0 2251 110 7 0 chr4 183095727 183096019 -1192643 - AluSx SINE Alu -18 294 1 552 270 107 10 chr4 183096020 183096216 -1192446 - MIR SINE MIR -6 256 42 849 142 0 8 chr4 183096272 183096406 -1192256 - AluJ SINE Alu -169 133 1 806 181 57 6 chr4 183096656 183096833 -1191829 + L1M4 LINE L1 4922 5107 -1039 791 124 25 0 chr4 183096889 183097010 -1191652 + AluSq/x SINE Alu 6 129 -184 1051 104 6 64 chr4 183097010 183097183 -1191479 + AluSc SINE Alu 94 256 -53 315 0 0 0 chr4 183097185 183097220 -1191442 + (TAA)n Simple_repeat Simple_repeat 2 36 0 389 305 86 50 chr4 183097813 183098348 -1190314 + L1MC4a LINE L1 4143 4696 -1450 334 315 67 67 chr4 183098398 183098744 -1189918 + L1MC4a LINE L1 4782 5127 -1019 2099 203 13 7 chr4 183098796 183099249 -1189413 + L1MA10 LINE L1 5746 6201 -133 2124 133 48 20 chr4 183099253 183099607 -1189055 + THE1B LTR MaLR 1 364 0 7366 107 2 1 chr4 183099607 183100659 -1188003 + THE1B-int LTR MaLR 1 1053 -527 1795 127 4 4 chr4 183100659 183100911 -1187751 + AluSq SINE Alu 1 252 -61 3382 109 19 31 chr4 183101051 183101627 -1187035 - MER41B LTR ERV1 -66 569 1 260 347 31 0 chr4 183101627 183101725 -1186937 - MIR SINE MIR -61 147 47 263 247 25 0 chr4 183101976 183102057 -1186605 + MER34 LTR ERV1 21 103 -439 229 193 108 48 chr4 183102055 183102138 -1186524 + LTR29 LTR ERV1 137 224 -398 * 784 226 75 78 chr4 183102138 183102580 -1186082 + LTR29 LTR ERV1 187 595 0 327 188 82 35 chr4 183103725 183103810 -1184852 - L1MC4 LINE L1 -1340 6702 6614 474 65 0 0 chr4 183103934 183103996 -1184666 + (GA)n Simple_repeat Simple_repeat 2 63 0 686 44 0 11 chr4 183103996 183104087 -1184575 + (GAAAA)n Simple_repeat Simple_repeat 5 94 0 3873 81 13 0 chr4 183104089 183104622 -1184040 + THE1B-int LTR MaLR 1041 1580 0 2306 102 48 26 chr4 183104626 183104978 -1183684 + THE1B LTR MaLR 5 364 0 443 193 0 0 chr4 183104979 183105067 -1183595 + L1MA10 LINE L1 6205 6292 -42 1032 226 18 0 chr4 183105070 183105291 -1183371 + AluJo SINE Alu 3 227 -85 531 282 50 57 chr4 183105498 183105997 -1182665 + L1MC4a LINE L1 5340 5817 -304 210 167 0 0 chr4 183106051 183106087 -1182575 + (TATATG)n Simple_repeat Simple_repeat 4 39 0 806 168 0 0 chr4 183106267 183106398 -1182264 - FLAM_C SINE Alu -2 131 1 22 0 0 0 chr4 183107944 183107966 -1180696 + AT_rich Low_complexity Low_complexity 1 22 0 1931 182 76 11 chr4 183108028 183108461 -1180201 - LOR1b LTR ERV1 0 461 1 26 82 0 0 chr4 183108617 183108678 -1179984 + AT_rich Low_complexity Low_complexity 1 61 0 847 186 153 4 chr4 183108678 183108926 -1179736 + L1M4 LINE L1 4267 4551 -1595 186 43 0 0 chr4 183108987 183109010 -1179652 + (TAA)n Simple_repeat Simple_repeat 2 24 0 4413 134 1 0 chr4 183109042 183109715 -1178947 - L1PA13 LINE L1 -2 6161 5488 1474 111 8 12 chr4 183109722 183110091 -1178571 + L1PA13 LINE L1 5104 5472 -689 2016 133 24 0 chr4 183110426 183110720 -1177942 - AluSx SINE Alu -11 301 1 300 292 241 20 chr4 183112050 183112245 -1176417 + MIR SINE MIR 2 239 -23 208 346 20 20 chr4 183112346 183112447 -1176215 + L2 LINE L2 2171 2271 -1043 437 309 67 77 chr4 183112476 183112881 -1175781 + L2 LINE L2 2871 3271 -1 627 222 60 81 chr4 183113855 183114103 -1174559 - MER112 DNA MER1_type -12 248 6 269 260 115 42 chr4 183114331 183114427 -1174235 - L2 LINE L2 -9 3304 3202 2195 105 3 0 chr4 183115782 183116068 -1172594 + AluSp SINE Alu 1 287 -26 254 29 29 0 chr4 183116072 183116107 -1172555 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 1715 161 8 0 chr4 183116876 183117143 -1171519 + AluJb SINE Alu 23 291 -21 320 220 214 69 chr4 183117151 183117551 -1171111 - MLT1H1 LTR MaLR -33 522 114 32 43 0 0 chr4 183117892 183117938 -1170724 + AT_rich Low_complexity Low_complexity 1 46 0 650 175 63 0 chr4 183117987 183118113 -1170549 - LTR40b LTR ERVL 0 462 329 916 266 38 26 chr4 183118260 183118721 -1169941 - LTR40a LTR ERVL -103 416 5 1358 250 58 5 chr4 183119323 183119699 -1168963 - MSTD LTR MaLR 0 396 1 2166 135 3 6 chr4 183120032 183120343 -1168319 - AluSx SINE Alu -2 310 1 1801 182 31 8 chr4 183121183 183121540 -1167122 + MLT1A1 LTR MaLR 1 365 0 268 272 39 39 chr4 183122102 183122205 -1166457 - L2 LINE L2 -12 3301 3199 1851 112 56 0 chr4 183122764 183123067 -1165595 + L1MA5A LINE L1 5972 6291 -6 186 323 13 63 chr4 183123180 183123338 -1165324 - L2 LINE L2 -181 3091 2942 361 323 65 32 chr4 183124000 183124186 -1164476 - L2 LINE L2 -520 2794 2603 180 111 0 0 chr4 183124947 183124974 -1163688 + (T)n Simple_repeat Simple_repeat 1 27 0 1050 150 0 0 chr4 183126124 183126284 -1162378 - AluSg/x SINE Alu -16 296 137 2169 140 58 0 chr4 183128130 183128459 -1160203 - MER7A DNA MER2_type 0 346 1 320 224 13 13 chr4 183128531 183128607 -1160055 + MIR SINE MIR 73 148 -114 22 0 0 0 chr4 183128689 183128711 -1159951 + AT_rich Low_complexity Low_complexity 1 22 0 3842 166 35 20 chr4 183128790 183129530 -1159132 - L1MA4A LINE L1 -11 6292 5542 217 19 58 39 chr4 183131025 183131077 -1157585 + (TA)n Simple_repeat Simple_repeat 1 53 0 222 346 31 15 chr4 183131103 183131233 -1157429 - MIR3 SINE MIR 0 208 77 312 274 0 0 chr4 183132391 183132464 -1156198 - MIR3 SINE MIR -6 202 130 1912 143 7 0 chr4 183133396 183133683 -1154979 + AluSx SINE Alu 1 289 -23 2044 124 7 7 chr4 183133703 183134002 -1154660 + AluSq SINE Alu 2 300 -13 410 211 70 8 chr4 183134452 183134580 -1154082 - L1ME4a LINE L1 -1 6120 5985 1462 160 69 6 chr4 183135660 183135984 -1152678 + MER1A DNA MER1_type 35 539 0 307 331 32 45 chr4 183136489 183136643 -1152019 - MIR SINE MIR -55 207 56 1915 209 82 17 chr4 183137418 183137892 -1150770 + MLT1D LTR MaLR 1 505 0 2340 168 10 5 chr4 183138089 183138495 -1150167 + L1MC1 LINE L1 5426 5833 -500 349 109 0 54 chr4 183138596 183138688 -1149974 + (TA)n Simple_repeat Simple_repeat 2 88 0 245 266 78 39 chr4 183139070 183139198 -1149464 - L2 LINE L2 -10 3303 3171 578 241 0 8 chr4 183140702 183140835 -1147827 + LTR67 LTR ERVL 418 549 -8 2283 93 3 0 chr4 183141316 183141618 -1147044 - AluSp SINE Alu -10 303 1 340 318 32 79 chr4 183141782 183142062 -1146600 - MLT1J LTR MaLR -134 377 111 1455 246 109 35 chr4 183142361 183142891 -1145771 - MLT1F1 LTR MaLR 0 567 1 404 336 64 34 chr4 183143277 183143575 -1145087 - L1MEc LINE L1 -1778 4437 4131 397 275 45 52 chr4 183143848 183144135 -1144527 - L1MEc LINE L1 -2545 3670 3386 2167 102 23 3 chr4 183144477 183144807 -1143855 - AluY SINE Alu 0 311 2 261 316 84 0 chr4 183144932 183145087 -1143575 - L1MEc LINE L1 -3869 2346 2179 993 200 35 15 chr4 183145396 183145596 -1143066 - MER3 DNA MER1_type -4 205 2 699 311 130 49 chr4 183145667 183146388 -1142274 - L1MEc LINE L1 -857 1719 1032 233 221 147 0 chr4 183150644 183150712 -1137950 + MER116 DNA Mariner 1 78 -2 32 0 0 0 chr4 183151579 183151611 -1137051 + AT_rich Low_complexity Low_complexity 1 32 0 221 211 0 58 chr4 183151690 183151742 -1136920 - MIR3 SINE MIR -39 169 121 311 341 30 0 chr4 183151966 183152098 -1136564 + L1MEd LINE L1 3 138 -5981 267 326 56 31 chr4 183152244 183152440 -1136222 + L1MEd LINE L1 316 516 -5603 1484 261 93 19 chr4 183152502 183153042 -1135620 - L1ME3A LINE L1 -1 6169 5590 290 325 36 0 chr4 183153103 183153186 -1135476 + L1MEd LINE L1 564 649 -5470 653 260 77 15 chr4 183153289 183153485 -1135177 + MER63A DNA MER1_type 1 208 -2 198 0 0 0 chr4 183153553 183153575 -1135087 + (A)n Simple_repeat Simple_repeat 1 22 0 298 233 193 67 chr4 183153672 183153895 -1134767 + L1MEd LINE L1 2619 2869 -3260 253 336 53 30 chr4 183154470 183154601 -1134061 - L2 LINE L2 0 3272 3139 3234 178 106 38 chr4 183154607 183155325 -1133337 + MER21B LTR ERV1 15 781 -82 426 176 10 92 chr4 183155585 183155694 -1132968 + MER21A LTR ERV1 762 860 -3 1090 186 31 10 chr4 183156906 183157100 -1131562 + MER58A DNA MER1_type 14 211 -13 606 271 77 24 chr4 183157154 183157401 -1131261 + L1MEc LINE L1 537 796 -5767 438 295 57 33 chr4 183157405 183157737 -1130925 + L1MEc LINE L1 1082 1421 -4963 * 4657 220 51 26 chr4 183157734 183159019 -1129643 + L1M4 LINE L1 4084 5401 -745 2464 68 0 0 chr4 183159024 183159319 -1129343 + AluY SINE Alu 1 295 -16 3157 177 17 2 chr4 183159419 183159994 -1128668 - L1 LINE L1 -955 5191 4608 380 305 58 17 chr4 183160057 183160231 -1128431 - MER5A DNA MER1_type -2 187 7 283 302 48 8 chr4 183160301 183160427 -1128235 - MIR SINE MIR -12 250 120 264 224 45 30 chr4 183160429 183160496 -1128166 - MLT1G LTR MaLR -199 391 324 642 262 27 49 chr4 183160982 183161245 -1127417 - L1ME LINE L1 -394 5770 5514 1111 190 24 14 chr4 183163573 183163784 -1124878 + MER20 DNA MER1_type 7 219 0 2225 103 3 0 chr4 183163790 183164090 -1124572 + AluSp SINE Alu 1 301 -12 180 0 0 0 chr4 183164641 183164661 -1124001 + (TA)n Simple_repeat Simple_repeat 1 20 0 1957 14 0 0 chr4 183164662 183164873 -1123789 - L1PA5 LINE L1 -5 6149 5939 28 0 0 0 chr4 183165188 183165216 -1123446 + AT_rich Low_complexity Low_complexity 1 28 0 231 250 114 45 chr4 183166428 183166516 -1122146 + MIR SINE MIR 41 134 -128 6583 88 0 12 chr4 183172066 183172923 -1115739 - L1PA10 LINE L1 -6 6162 5296 210 37 0 0 chr4 183172923 183172950 -1115712 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2168 120 0 0 chr4 183172950 183173233 -1115429 - AluSg SINE Alu -27 283 1 6583 88 0 12 chr4 183173233 183173799 -1114863 - L1PA10 LINE L1 -870 5298 4749 7787 130 5 6 chr4 183173799 183174987 -1113675 + L1PA10 LINE L1 3554 4740 -1406 21 36 0 0 chr4 183177647 183177675 -1110987 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr4 183178120 183178149 -1110513 + AT_rich Low_complexity Low_complexity 1 29 0 3068 201 43 9 chr4 183178178 183179011 -1109651 - L1MB5 LINE L1 0 6164 5266 222 152 22 0 chr4 183179011 183179057 -1109605 + (TA)n Simple_repeat Simple_repeat 1 47 0 2810 217 20 4 chr4 183179064 183179768 -1108894 - L1MB5 LINE L1 -1904 4242 3528 1237 146 34 0 chr4 183180029 183180262 -1108400 + L1MA4 LINE L1 6060 6300 0 199 220 0 80 chr4 183181260 183181310 -1107352 + L2 LINE L2 3266 3311 -2 660 227 90 55 chr4 183182086 183182452 -1106210 + MER113 DNA MER1_type? 39 417 -104 22 0 0 0 chr4 183183130 183183152 -1105510 + AT_rich Low_complexity Low_complexity 1 22 0 257 61 0 0 chr4 183184702 183184735 -1103927 - MLT2D LTR ERVL -4 410 378 444 37 0 0 chr4 183184735 183184789 -1103873 + (GA)n Simple_repeat Simple_repeat 2 55 0 252 0 0 0 chr4 183184788 183184816 -1103846 + (TG)n Simple_repeat Simple_repeat 2 29 0 * 603 222 36 57 chr4 183184964 183185158 -1103504 + MLT1A2 LTR MaLR 173 362 -12 262 196 0 0 chr4 183185200 183185246 -1103416 - L2 LINE L2 0 3272 3227 5126 173 45 2 chr4 183185271 183187244 -1101418 + L1PA16 LINE L1 4114 6165 -1 241 232 189 43 chr4 183187247 183187411 -1101251 - L2 LINE L2 -77 3236 3049 418 250 42 47 chr4 183187828 183188064 -1100598 - HAL1 LINE L1 0 2507 2273 321 266 49 86 chr4 183188051 183188400 -1100262 - HAL1 LINE L1 -194 2313 1978 * 244 280 72 24 chr4 183188471 183188596 -1100066 - HAL1 LINE L1 -1752 755 625 24 0 0 0 chr4 183188613 183188637 -1100025 + AT_rich Low_complexity Low_complexity 1 24 0 2359 98 0 0 chr4 183189611 183189916 -1098746 - AluSx SINE Alu -7 305 1 28 29 0 0 chr4 183190791 183190826 -1097836 + AT_rich Low_complexity Low_complexity 1 35 0 2187 101 31 0 chr4 183191396 183191682 -1096980 + AluSx SINE Alu 1 295 -17 234 254 0 0 chr4 183191932 183191991 -1096671 - MER117 DNA MER1_type -84 113 55 528 278 12 6 chr4 183194352 183194514 -1094148 + LTR33 LTR ERVL 4 166 -355 1046 99 0 0 chr4 183194969 183195100 -1093562 + AluSc SINE Alu 1 131 -178 2054 126 0 32 chr4 183195111 183195420 -1093242 + AluSc SINE Alu 1 299 -10 199 336 87 19 chr4 183196764 183196843 -1091819 + L2 LINE L2 3156 3245 -27 2467 141 52 0 chr4 183196843 183197247 -1091415 - MSTB LTR MaLR -1 425 1 199 336 87 19 chr4 183197247 183197271 -1091391 + L2 LINE L2 3245 3266 -6 330 132 0 0 chr4 183197482 183197535 -1091127 + (TG)n Simple_repeat Simple_repeat 2 54 0 2586 33 0 7 chr4 183200512 183200815 -1087847 + AluY SINE Alu 1 301 -10 212 240 0 20 chr4 183200939 183200989 -1087673 + GA-rich Low_complexity Low_complexity 4 52 0 21 0 0 0 chr4 183201100 183201121 -1087541 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr4 183201229 183201256 -1087406 + AT_rich Low_complexity Low_complexity 1 27 0 7536 36 16 4 chr4 183201273 183202846 -1085816 - L1PA5 LINE L1 -2 6152 4571 2333 124 5 24 chr4 183203250 183203621 -1085041 + THE1B LTR MaLR 1 364 0 11822 88 10 1 chr4 183203621 183205182 -1083480 + THE1B-int LTR MaLR 1 1576 -4 2339 109 36 20 chr4 183205186 183205544 -1083118 + THE1B LTR MaLR 1 364 0 315 174 37 28 chr4 183205554 183205663 -1082999 + (TTATA)n Simple_repeat Simple_repeat 5 114 0 339 283 20 0 chr4 183206068 183206167 -1082495 + LTR67 LTR ERVL 450 550 -7 2182 105 3 20 chr4 183206358 183206662 -1082000 + AluSx SINE Alu 1 299 -13 276 136 15 61 chr4 183206847 183206913 -1081749 - Alu SINE Alu 0 302 240 661 252 95 9 chr4 183256919 183257141 -1031521 + L1MC4 LINE L1 6767 7007 -1035 1545 248 92 18 chr4 183257186 183257851 -1030811 + L1MC4 LINE L1 7148 7861 -181 322 367 17 8 chr4 183257896 183258016 -1030646 + MIR3 SINE MIR 15 135 -73 870 190 5 62 chr4 183258311 183258456 -1030206 + Tigger2 DNA MER2_type 2506 2639 -69 2256 114 0 0 chr4 183258456 183258754 -1029908 - AluSx SINE Alu -14 298 1 870 190 5 62 chr4 183258754 183258803 -1029859 + Tigger2 DNA MER2_type 2639 2689 -19 21 0 0 0 chr4 183259062 183259083 -1029579 + AT_rich Low_complexity Low_complexity 1 21 0 366 23 0 0 chr4 183259341 183259384 -1029278 + (CA)n Simple_repeat Simple_repeat 2 44 0 296 295 105 11 chr4 183261368 183261463 -1027199 - MIR3 SINE MIR -98 110 7 207 0 0 0 chr4 183262787 183262810 -1025852 + (TG)n Simple_repeat Simple_repeat 2 24 0 2175 90 3 10 chr4 183262810 183263098 -1025564 - AluSq SINE Alu -27 286 1 3037 39 17 7 chr4 183264071 183264481 -1024181 - L1P2 LINE L1 -487 5667 5254 234 114 0 0 chr4 183264495 183264530 -1024132 + L1P LINE L1 4503 4537 -1609 827 147 0 7 chr4 183265678 183265828 -1022834 + (TTCC)n Simple_repeat Simple_repeat 4 152 0 1365 116 5 0 chr4 183265930 183266119 -1022543 + AluSp SINE Alu 121 310 -3 616 340 95 21 chr4 183266311 183266982 -1021680 - L2 LINE L2 -976 2338 1618 1241 259 40 6 chr4 183267347 183267698 -1020964 - MLT1A1 LTR MaLR -2 363 1 230 333 62 0 chr4 183267864 183267945 -1020717 + L2 LINE L2 3150 3235 -37 451 319 76 13 chr4 183269219 183269376 -1019286 + MIR3 SINE MIR 35 201 -7 239 269 101 34 chr4 183270879 183270998 -1017664 + MIR3 SINE MIR 37 163 -45 232 217 0 158 chr4 183271627 183271747 -1016915 - MER5B DNA MER1_type -77 101 1 283 333 0 11 chr4 183272664 183272754 -1015908 - MIR3 SINE MIR -38 170 82 254 111 61 50 chr4 183272876 183272975 -1015687 + (TATAA)n Simple_repeat Simple_repeat 1 100 0 410 278 40 8 chr4 183274331 183274457 -1014205 - L2 LINE L2 -1 3312 3183 1598 201 0 0 chr4 183275118 183275406 -1013256 + AluJo SINE Alu 1 288 -24 315 242 0 15 chr4 183276052 183276118 -1012544 - L2 LINE L2 0 3313 3249 3042 104 7 0 chr4 183276472 183276914 -1011748 + L1PB2 LINE L1 5705 6149 -2 23 54 0 0 chr4 183277061 183277098 -1011564 + AT_rich Low_complexity Low_complexity 1 37 0 493 321 118 17 chr4 183281544 183281769 -1006893 - MIR SINE MIR -23 239 3 28 0 0 0 chr4 183282055 183282083 -1006579 + AT_rich Low_complexity Low_complexity 1 28 0 327 259 25 75 chr4 183282083 183282322 -1006340 - HAL1 LINE L1 0 2507 2281 2279 95 7 0 chr4 183282535 183282831 -1005831 - AluSx SINE Alu -12 300 3 367 312 108 52 chr4 183283064 183283407 -1005255 - HAL1 LINE L1 -1888 619 258 1332 124 17 37 chr4 183283833 183284074 -1004588 - Tigger2a DNA MER2_type -198 236 1 2400 165 2 38 chr4 183285273 183285722 -1002940 + Tigger2a DNA MER2_type 1 433 -1 744 93 42 0 chr4 183287050 183287168 -1001494 - L1MA9 LINE L1 0 6312 6190 1779 197 33 0 chr4 183287233 183287623 -1001039 - MER57A LTR ERV1 0 403 1 180 306 71 41 chr4 183287936 183288034 -1000628 - MIR SINE MIR -103 159 59 451 198 0 17 chr4 183288843 183288959 -999703 + CT-rich Low_complexity Low_complexity 3 116 0 180 0 0 0 chr4 183289989 183290009 -998653 + (TG)n Simple_repeat Simple_repeat 1 20 0 2190 115 0 0 chr4 183290062 183290366 -998296 + AluSg SINE Alu 1 304 -6 606 187 107 27 chr4 183292196 183292346 -996316 + MER45A DNA AcHobo 17 178 0 183 327 0 0 chr4 183292425 183292477 -996185 + L2 LINE L2 3179 3230 -83 1885 168 58 0 chr4 183292601 183292946 -995716 + MLT1A1 LTR MaLR 1 365 0 383 257 155 32 chr4 183292970 183293157 -995505 - MIR SINE MIR -18 244 35 3090 42 98 0 chr4 183293253 183293653 -995009 - L1PA5 LINE L1 -8 6146 5708 978 179 32 109 chr4 183293753 183293906 -994756 - L1M4 LINE L1 -552 5632 5469 2303 119 0 0 chr4 183293906 183294217 -994445 - AluSx SINE Alu -1 311 1 978 179 32 109 chr4 183294217 183294319 -994343 - L1M4 LINE L1 -715 5469 5407 2117 143 3 0 chr4 183294319 183294626 -994036 - AluSx SINE Alu -2 310 3 978 179 32 109 chr4 183294626 183294709 -993953 - L1M4 LINE L1 -777 5407 5319 322 86 0 57 chr4 183294720 183294790 -993872 - L1MA4 LINE L1 0 6300 6235 2077 227 16 30 chr4 183294873 183295482 -993180 - L1M4 LINE L1 -851 5295 4695 646 259 129 11 chr4 183295615 183295901 -992761 - MLT1H LTR MaLR 0 549 230 809 179 0 17 chr4 183297537 183297766 -990896 + CT-rich Low_complexity Low_complexity 1 225 0 789 160 0 0 chr4 183297771 183297896 -990766 - L1PB4 LINE L1 -12 6144 6020 1703 159 0 44 chr4 183297909 183298204 -990458 - AluJo SINE Alu -30 282 1 524 215 110 0 chr4 183300662 183300817 -987845 + L1MC4a LINE L1 6471 6601 -1207 23 33 0 0 chr4 183301280 183301310 -987352 + AT_rich Low_complexity Low_complexity 1 30 0 536 202 17 25 chr4 183301408 183301527 -987135 + MER5A DNA MER1_type 16 133 -56 868 115 8 0 chr4 183301537 183301659 -987003 + AluSq/x SINE Alu 1 123 -189 301 278 4 11 chr4 183301667 183301761 -986901 + MIR SINE MIR 69 164 -44 440 318 76 29 chr4 183305224 183305674 -982988 + L1 LINE L1 3390 3860 -2286 236 273 20 10 chr4 183305701 183305800 -982862 - MER103 DNA DNA -55 111 12 195 343 0 0 chr4 183306591 183306658 -982004 + L2 LINE L2 3245 3311 -2 456 259 9 9 chr4 183306992 183307108 -981554 + MLT1E LTR MaLR 6 121 -472 2315 181 10 4 chr4 183307111 183307602 -981060 + L1 LINE L1 3841 4334 -1812 3490 112 15 9 chr4 183307615 183308144 -980518 - L1PA11 LINE L1 0 6174 5643 1721 215 10 10 chr4 183308151 183308541 -980121 + L1PA16 LINE L1 5762 6151 -15 942 243 91 35 chr4 183308659 183309000 -979662 + MLT1E LTR MaLR 233 592 -1 21 57 0 0 chr4 183309586 183309621 -979041 + AT_rich Low_complexity Low_complexity 1 35 0 353 274 21 0 chr4 183312059 183312154 -976508 - MIR SINE MIR -99 163 67 2801 145 42 2 chr4 183312228 183312752 -975910 - Tigger4(Zombi) DNA MER2_type 0 2731 2187 831 169 81 0 chr4 183312769 183312929 -975733 - Tigger4(Zombi) DNA MER2_type -2558 173 1 241 204 19 0 chr4 183312881 183312935 -975727 + MER46A DNA MER2_type 97 151 -85 * 282 29 0 0 chr4 183313125 183313160 -975502 + (CA)n Simple_repeat Simple_repeat 1 35 0 210 37 0 0 chr4 183313853 183313880 -974782 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 431 160 85 0 chr4 183315075 183315169 -973493 - L1MA9 LINE L1 0 6312 6211 579 307 83 76 chr4 183315283 183315703 -972959 + L2 LINE L2 2459 2881 -433 211 163 25 38 chr4 183315798 183315878 -972784 + (TTA)n Simple_repeat Simple_repeat 3 81 0 322 330 9 9 chr4 183315927 183316033 -972629 + L2 LINE L2 3206 3311 -2 240 299 51 26 chr4 183316366 183316483 -972179 + MLT1K LTR MaLR 112 231 -357 889 131 36 0 chr4 183318131 183318299 -970363 - L1MA9 LINE L1 -119 6193 6020 288 308 144 0 chr4 183319227 183319331 -969331 - MIR3 SINE MIR -9 199 81 592 306 87 9 chr4 183319555 183319774 -968888 - MIR SINE MIR -6 256 21 567 279 30 18 chr4 183320178 183320343 -968319 - MIR SINE MIR -21 241 75 576 348 98 26 chr4 183321408 183321555 -967107 - L2 LINE L2 -1 3271 3136 186 103 0 0 chr4 183321555 183321584 -967078 + (CAAG)n Simple_repeat Simple_repeat 3 31 0 576 348 98 26 chr4 183321584 183321853 -966809 - L2 LINE L2 -136 3136 2825 566 304 5 10 chr4 183321894 183322088 -966574 - MER58B DNA MER1_type 0 341 149 21 0 0 0 chr4 183322088 183322109 -966553 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr4 183322453 183322492 -966170 + AT_rich Low_complexity Low_complexity 1 39 0 2729 167 21 4 chr4 183322527 183323048 -965614 - L1MA4 LINE L1 -68 6232 5703 2635 311 119 45 chr4 183323163 183324974 -963688 + L2 LINE L2 937 2881 -433 28 48 0 0 chr4 183325067 183325109 -963553 + AT_rich Low_complexity Low_complexity 1 42 0 23 68 0 0 chr4 183325515 183325559 -963103 + AT_rich Low_complexity Low_complexity 1 44 0 2241 90 3 3 chr4 183326132 183326432 -962230 + AluSx SINE Alu 1 300 -12 35 0 0 0 chr4 183327614 183327649 -961013 + AT_rich Low_complexity Low_complexity 1 35 0 33 25 0 0 chr4 183328010 183328050 -960612 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr4 183328403 183328431 -960231 + AT_rich Low_complexity Low_complexity 1 28 0 265 107 18 18 chr4 183328603 183328659 -960003 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 254 299 52 21 chr4 183328775 183328872 -959790 + MER5A DNA MER1_type 87 186 -3 709 227 85 78 chr4 183329179 183329566 -959096 - L1ME3A LINE L1 -9 6161 5772 402 229 17 42 chr4 183329624 183329742 -958920 + MER63 DNA MER1_type 9 749 -313 384 273 6 42 chr4 183329824 183329989 -958673 - L1ME3A LINE L1 -619 5545 5387 443 308 192 23 chr4 183330381 183330767 -957895 + L2 LINE L2 2863 3313 0 2164 125 0 0 chr4 183330927 183331222 -957440 + AluY SINE Alu 1 295 -16 2367 178 55 8 chr4 183331228 183331718 -956944 - L1MB1 LINE L1 -1 6167 5655 1464 182 57 24 chr4 183331718 183332231 -956431 + L1MB1 LINE L1 5115 5666 -502 197 379 0 0 chr4 183332412 183332470 -956192 - L2 LINE L2 -35 3278 3221 21 0 0 0 chr4 183333453 183333474 -955188 + AT_rich Low_complexity Low_complexity 1 21 0 1273 218 75 11 chr4 183334897 183335177 -953485 - AluJo SINE Alu -13 299 2 26 30 0 0 chr4 183335202 183335235 -953427 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr4 183335334 183335356 -953306 + AT_rich Low_complexity Low_complexity 1 22 0 2093 118 14 10 chr4 183335606 183335903 -952759 + AluSx SINE Alu 1 298 -14 183 241 0 37 chr4 183337759 183337813 -950849 + L2 LINE L2 3262 3313 0 2535 87 26 0 chr4 183338280 183338626 -950036 + THE1A LTR MaLR 1 355 0 384 276 20 13 chr4 183338874 183339026 -949636 + L1ME3A LINE L1 5587 5739 -431 369 269 26 77 chr4 183339045 183339201 -949461 + L1ME3A LINE L1 5815 5962 -208 462 251 150 29 chr4 183341346 183341553 -947109 + MIR SINE MIR 21 252 -10 1443 61 14 70 chr4 183341805 183342019 -946643 - AluSg/x SINE Alu -13 299 98 21 0 0 0 chr4 183342459 183342480 -946182 + AT_rich Low_complexity Low_complexity 1 21 0 338 304 0 54 chr4 183342980 183343128 -945534 + MIR SINE MIR 8 147 -115 252 153 28 14 chr4 183343769 183343841 -944821 + CT-rich Low_complexity Low_complexity 3 75 0 2568 68 0 3 chr4 183345471 183345781 -942881 + AluY SINE Alu 1 309 -2 7107 198 44 36 chr4 183346185 183347489 -941173 - L1ME2 LINE L1 -34 6130 4800 4506 140 22 3 chr4 183347489 183348248 -940414 - L1MA5 LINE L1 -4 6296 5523 7107 198 44 36 chr4 183348248 183349300 -939362 - L1ME2 LINE L1 -1364 4800 3758 547 131 0 0 chr4 183349887 183349971 -938691 + Tigger1 DNA MER2_type 1998 2081 -337 180 0 0 0 chr4 183350321 183350341 -938321 + (TTG)n Simple_repeat Simple_repeat 2 21 0 514 256 85 82 chr4 183350937 183351218 -937444 + HAL1 LINE L1 920 1201 -1306 318 255 0 51 chr4 183351231 183351252 -937410 + HAL1 LINE L1 1271 1292 -1215 778 173 8 0 chr4 183351252 183351379 -937283 + FLAM_A SINE Alu 1 128 -5 318 255 0 51 chr4 183351379 183351455 -937207 + HAL1 LINE L1 1292 1363 -1144 340 321 15 0 chr4 183351907 183352038 -936624 + MER117 DNA MER1_type 4 136 -61 1974 125 108 21 chr4 183352054 183352389 -936273 - THE1B LTR MaLR 0 364 1 207 0 0 0 chr4 183352606 183352629 -936033 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 311 308 39 10 chr4 183352639 183352743 -935919 - L2 LINE L2 -36 3277 3171 260 324 110 7 chr4 183353532 183353668 -934994 + L2 LINE L2 1016 1165 -2149 227 215 0 46 chr4 183353824 183353889 -934773 - MER63 DNA MER1_type -341 721 34 429 235 4 13 chr4 183354437 183354565 -934097 + MIR SINE MIR 40 161 -58 1146 239 8 0 chr4 183354590 183354845 -933817 + MLT1A1 LTR MaLR 109 365 0 2366 82 0 0 chr4 183354860 183355153 -933509 - AluSc SINE Alu -16 293 1 320 368 63 40 chr4 183355438 183355737 -932925 + L2 LINE L2 2966 3271 -1 207 338 68 8 chr4 183355782 183355915 -932747 - L2 LINE L2 0 3313 3173 237 227 45 23 chr4 183356288 183356376 -932286 + MLT1L LTR MaLR 425 514 -101 2338 158 26 12 chr4 183357717 183358140 -930522 + MSTB1 LTR MaLR 4 432 0 318 295 171 58 chr4 183359116 183359672 -928990 + L2 LINE L2 1560 2178 -1136 533 296 25 31 chr4 183359769 183359965 -928697 + L2 LINE L2 3118 3312 -1 201 204 45 0 chr4 183360192 183360236 -928426 + L2 LINE L2 3197 3242 -71 22 35 0 0 chr4 183360346 183360375 -928287 + AT_rich Low_complexity Low_complexity 1 29 0 456 298 17 22 chr4 183360469 183360650 -928012 + MIR SINE MIR 13 192 -70 1473 273 81 23 chr4 183360704 183361232 -927430 + MLT1E LTR MaLR 17 575 -18 687 290 110 23 chr4 183361830 183362257 -926405 - L1ME LINE L1 -336 5785 5322 579 293 65 35 chr4 183362457 183362689 -925973 - MIR SINE MIR -8 254 16 308 194 21 43 chr4 183362872 183362965 -925697 - L1ME4a LINE L1 -1 6120 6030 31 26 0 0 chr4 183363727 183363765 -924897 + AT_rich Low_complexity Low_complexity 1 38 0 227 258 42 78 chr4 183366013 183366180 -922482 - MLT1L LTR MaLR -235 380 220 1165 204 124 67 chr4 183368005 183368481 -920181 - MLT1D LTR MaLR -2 503 1 319 346 136 6 chr4 183369833 183369995 -918667 - MIR SINE MIR -78 184 2 2337 48 17 0 chr4 183370111 183370404 -918258 - L1PA4 LINE L1 -1 6154 5857 193 365 106 0 chr4 183370465 183370550 -918112 + MIR3 SINE MIR 101 194 -14 265 301 0 43 chr4 183371149 183371242 -917420 - L2 LINE L2 -13 3300 3212 421 333 0 19 chr4 183371412 183371571 -917091 + L2 LINE L2 3158 3313 0 184 243 0 0 chr4 183371697 183371734 -916928 + MIR SINE MIR 111 147 -61 1838 241 11 42 chr4 183371749 183372300 -916362 - MLT1F LTR MaLR -5 537 4 207 0 0 0 chr4 183372497 183372520 -916142 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 407 269 97 0 chr4 183374028 183374162 -914500 + MIR SINE MIR 80 226 -36 1831 118 4 8 chr4 183374838 183375100 -913562 + AluSx SINE Alu 6 266 -46 348 216 94 111 chr4 183375424 183375605 -913057 - MER5B DNA MER1_type 0 178 1 748 231 0 12 chr4 183377418 183377591 -911071 + MER5B DNA MER1_type 6 176 -2 557 282 101 5 chr4 183377973 183378182 -910480 - MIR SINE MIR -8 254 26 1115 246 11 4 chr4 183379064 183379345 -909317 + L1MA4 LINE L1 6012 6294 -6 1660 201 7 3 chr4 183381958 183382266 -906396 - AluJb SINE Alu -3 309 1 205 375 11 0 chr4 183383088 183383176 -905486 + (TATATG)n Simple_repeat Simple_repeat 6 94 0 245 359 49 14 chr4 183383553 183383695 -904967 + MIR SINE MIR 96 242 -20 2151 80 13 20 chr4 183383702 183384003 -904659 + AluY SINE Alu 1 299 -12 693 250 14 65 chr4 183384438 183384654 -904008 - MER58C DNA MER1_type 0 215 11 547 222 133 36 chr4 183384925 183384981 -903681 - MIR SINE MIR 0 262 213 1539 222 77 8 chr4 183384981 183385346 -903316 + MLT1B LTR MaLR 1 390 0 547 222 133 36 chr4 183385346 183385514 -903148 - MIR SINE MIR -49 213 16 1337 198 22 32 chr4 183389212 183389388 -899274 - AluJb SINE Alu -20 292 119 2193 104 0 10 chr4 183389388 183389687 -898975 + AluSx SINE Alu 1 296 -16 1337 198 22 32 chr4 183389687 183389788 -898874 - AluJb SINE Alu -193 119 18 429 218 24 0 chr4 183389800 183389924 -898738 + CT-rich Low_complexity Low_complexity 2 128 0 417 236 0 36 chr4 183390308 183390418 -898244 + L1ME LINE L1 5719 5824 -297 649 203 85 26 chr4 183390590 183390743 -897919 + L1MC4 LINE L1 7413 7574 -468 300 271 45 90 chr4 183391719 183391874 -896788 + MIR3 SINE MIR 4 151 -57 1562 138 60 21 chr4 183391874 183392157 -896505 + AluJb SINE Alu 1 294 -18 207 211 58 0 chr4 183392561 183392613 -896049 + L2 LINE L2 3259 3313 0 29 28 0 0 chr4 183392686 183392722 -895940 + AT_rich Low_complexity Low_complexity 1 36 0 183 307 109 20 chr4 183393796 183393897 -894765 - MIR SINE MIR -74 188 79 23 33 0 0 chr4 183394479 183394509 -894153 + AT_rich Low_complexity Low_complexity 1 30 0 623 193 0 9 chr4 183394848 183394957 -893705 - FLAM_A SINE Alu -22 120 13 928 151 188 0 chr4 183395172 183395364 -893298 + Tigger7 DNA MER2_type 2252 2479 -8 1301 212 81 98 chr4 183395607 183396116 -892546 + MLT1D LTR MaLR 1 500 -5 2385 99 0 0 chr4 183396706 183397010 -891652 + AluSg SINE Alu 5 308 -2 205 279 73 15 chr4 183397423 183397491 -891171 - L2 LINE L2 -172 3100 3029 1011 244 5 0 chr4 183397932 183398153 -890509 + MIR SINE MIR 20 241 -21 21 89 0 0 chr4 183398967 183399023 -889639 + AT_rich Low_complexity Low_complexity 1 56 0 309 318 58 63 chr4 183399046 183399235 -889427 + HAL1 LINE L1 2238 2425 -82 1225 249 32 10 chr4 183399418 183399727 -888935 - MER58B DNA MER1_type -16 325 10 279 287 120 53 chr4 183399884 183400093 -888569 + MLT1K LTR MaLR 163 385 -203 1165 157 14 23 chr4 183400096 183400312 -888350 + MLT2D LTR ERVL 1 214 -200 339 211 48 39 chr4 183400339 183400443 -888219 + MLT2D LTR ERVL 198 302 -112 693 103 53 4 chr4 183400487 183400738 -887924 + (TA)n Simple_repeat Simple_repeat 1 263 0 234 0 0 0 chr4 183401055 183401081 -887581 + (TA)n Simple_repeat Simple_repeat 2 27 0 1958 119 15 0 chr4 183401081 183401349 -887313 - AluSx SINE Alu -28 284 13 21 0 0 0 chr4 183401349 183401370 -887292 + AT_rich Low_complexity Low_complexity 1 21 0 394 356 47 17 chr4 183402312 183402548 -886114 - MIR SINE MIR -12 250 8 4763 162 36 25 chr4 183403474 183404501 -884161 - L1MB3 LINE L1 0 6183 5140 878 243 6 0 chr4 183404528 183404697 -883965 + MER82 DNA MER2_type 474 643 -10 200 200 25 0 chr4 183404703 183404743 -883919 + (CA)n Simple_repeat Simple_repeat 2 42 0 351 191 0 0 chr4 183405719 183405782 -882880 + L1PA8 LINE L1 6097 6159 -13 202 293 111 0 chr4 183405931 183406030 -882632 + MIR SINE MIR 83 192 -70 22 35 0 0 chr4 183406786 183406815 -881847 + AT_rich Low_complexity Low_complexity 1 29 0 1998 195 51 20 chr4 183406896 183407347 -881315 + MLT1C LTR MaLR 3 467 0 281 307 92 33 chr4 183407430 183407583 -881079 - MIR3 SINE MIR -41 167 6 918 265 0 0 chr4 183409008 183409208 -879454 - MER3 DNA MER1_type -9 200 1 22 35 0 0 chr4 183409683 183409712 -878950 + AT_rich Low_complexity Low_complexity 1 29 0 616 63 0 0 chr4 183410726 183410805 -877857 + L1PA8 LINE L1 5901 5979 -193 24 85 0 0 chr4 183411134 183411193 -877469 + AT_rich Low_complexity Low_complexity 1 59 0 274 276 53 13 chr4 183412585 183412661 -876001 - L2 LINE L2 -2 3311 3233 2732 159 31 13 chr4 183412686 183413139 -875523 + LOR1b LTR ERV1 1 461 0 23 54 0 0 chr4 183414122 183414159 -874503 + AT_rich Low_complexity Low_complexity 1 37 0 1804 253 84 21 chr4 183414501 183415059 -873603 - MLT1E LTR MaLR 0 593 1 1390 200 14 32 chr4 183415434 183415719 -872943 + AluJo SINE Alu 3 282 -30 228 182 0 0 chr4 183415733 183415777 -872885 + (TA)n Simple_repeat Simple_repeat 2 45 0 202 200 40 0 chr4 183416352 183416402 -872260 + (TA)n Simple_repeat Simple_repeat 1 52 0 227 307 58 49 chr4 183416752 183417078 -871584 + L1MC/D LINE L1 3581 3909 -2237 871 264 28 20 chr4 183417081 183417335 -871327 - MIR SINE MIR -5 257 2 183 222 0 0 chr4 183417535 183417571 -871091 - L2 LINE L2 0 3313 3278 3752 85 14 2 chr4 183417571 183418065 -870597 + LTR3b LTR ERVK 1 500 0 772 235 57 39 chr4 183418067 183418297 -870365 - L2 LINE L2 -32 3281 3048 327 317 78 19 chr4 183418352 183418557 -870105 + L1MC/D LINE L1 4171 4387 -1759 253 253 0 24 chr4 183418850 183418933 -869729 + L1MC/D LINE L1 4733 4813 -1333 431 202 24 0 chr4 183419005 183419089 -869573 + FLAM_A SINE Alu 39 124 -18 487 258 44 6 chr4 183419089 183419271 -869391 + L1MC/D LINE L1 4881 5069 -1077 2391 258 12 8 chr4 183419364 183419879 -868783 - LTR40a LTR ERVL 0 519 3 430 328 66 23 chr4 183419950 183420298 -868364 + L1MC/D LINE L1 5293 5655 -507 259 62 0 42 chr4 183420595 183420643 -868019 + (TTTCC)n Simple_repeat Simple_repeat 5 50 0 1527 211 3 22 chr4 183420654 183420971 -867691 - AluJo SINE Alu 0 312 2 241 227 55 78 chr4 183421043 183421171 -867491 + L2 LINE L2 3140 3264 -8 1864 130 60 0 chr4 183421297 183421581 -867081 - AluSx SINE Alu -11 301 1 188 178 0 22 chr4 183422080 183422125 -866537 + CT-rich Low_complexity Low_complexity 4 47 0 2115 119 0 0 chr4 183422126 183422412 -866250 - AluY SINE Alu -23 288 3 444 267 64 56 chr4 183423385 183423636 -865026 - MLT1A2 LTR MaLR -1 364 112 871 185 0 25 chr4 183423717 183423879 -864783 - MLT1A2 LTR MaLR -216 158 1 251 279 41 68 chr4 183423975 183424122 -864540 + L3 LINE CR1 1332 1474 -103 1822 155 4 4 chr4 183424163 183424441 -864221 + AluJo SINE Alu 12 289 -23 2097 130 3 7 chr4 183426578 183426878 -861784 - AluSx SINE Alu -13 299 1 272 246 0 16 chr4 183428144 183428205 -860457 + CT-rich Low_complexity Low_complexity 4 63 0 2275 107 3 0 chr4 183428205 183428523 -860139 - AluSg SINE Alu 0 380 1 2211 257 128 79 chr4 183428826 183429775 -858887 + L1MC4a LINE L1 6512 7536 -272 1893 158 70 14 chr4 183429775 183430130 -858532 - THE1C LTR MaLR 0 375 1 2211 257 128 79 chr4 183430130 183430417 -858245 + L1MC4a LINE L1 7536 7808 0 751 242 33 21 chr4 183430395 183430635 -858027 + L1MD2 LINE L1 6116 6358 -1 * 21 0 0 0 chr4 183430928 183430949 -857713 + AT_rich Low_complexity Low_complexity 1 21 0 2191 93 0 7 chr4 183431538 183431829 -856833 - AluSx SINE Alu -23 289 1 21 36 0 0 chr4 183432288 183432316 -856346 + AT_rich Low_complexity Low_complexity 1 28 0 268 268 113 42 chr4 183483455 183483623 -805039 + MER117 DNA MER1_type 9 188 -9 2344 209 61 39 chr4 183483863 183484457 -804205 - L1MB7 LINE L1 -89 6095 5489 1137 299 187 31 chr4 183485024 183485354 -803308 - L2 LINE L2 -410 2904 2627 2311 98 10 0 chr4 183485354 183485661 -803001 + AluSq SINE Alu 1 310 -3 1137 299 187 31 chr4 183485661 183486385 -802277 - L2 LINE L2 -687 2627 1686 191 306 10 82 chr4 183487258 183487356 -801306 + MIR3 SINE MIR 112 202 -6 369 228 71 126 chr4 183487997 183488252 -800410 - MLT1D LTR MaLR -226 241 1 568 233 57 51 chr4 183489900 183490076 -798586 + MLT1B LTR MaLR 1 177 -197 900 176 0 0 chr4 183490152 183490300 -798362 - Tigger1 DNA MER2_type 0 2418 2271 915 233 25 0 chr4 183490339 183490541 -798121 + MLT1B LTR MaLR 184 390 0 590 301 37 32 chr4 183491687 183491903 -796759 - MIR SINE MIR -33 229 13 14270 145 15 28 chr4 183492560 183493871 -794791 - Tigger1 DNA MER2_type 0 2418 1154 892 133 0 15 chr4 183493871 183494006 -794656 + FLAM_C SINE Alu 1 133 0 14270 145 15 28 chr4 183494006 183495145 -793517 - Tigger1 DNA MER2_type -1264 1154 1 2297 88 0 7 chr4 183496354 183496649 -792013 - AluSg SINE Alu -13 297 5 1907 199 17 10 chr4 183496869 183497296 -791366 - L1MB7 LINE L1 -785 5361 4962 3584 148 42 18 chr4 183497330 183497993 -790669 + L1MA8 LINE L1 5352 6030 -261 2243 82 4 0 chr4 183498248 183498527 -790135 + AluSp SINE Alu 1 280 -33 233 163 20 0 chr4 183498532 183498581 -790081 + GA-rich Low_complexity Low_complexity 2 51 0 253 169 119 0 chr4 183499681 183499740 -788922 + L1MC4 LINE L1 6653 6718 -1324 1805 102 0 0 chr4 183500337 183500573 -788089 - AluSq SINE Alu -77 236 1 411 329 14 0 chr4 183500574 183500717 -787945 - MIR SINE MIR -1 261 117 13565 215 20 7 chr4 183500765 183504767 -783895 + L1PA13 LINE L1 1105 5167 -1630 21 0 0 0 chr4 183504889 183504910 -783752 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 183505522 183505545 -783117 + AT_rich Low_complexity Low_complexity 1 23 0 260 279 0 0 chr4 183507297 183507358 -781304 + (CATATA)n Simple_repeat Simple_repeat 3 63 0 1959 128 11 3 chr4 183507698 183508056 -780606 + AluSc SINE Alu 4 363 0 2106 132 30 30 chr4 183509459 183509823 -778839 - THE1B LTR MaLR 0 364 1 4211 105 10 11 chr4 183511731 183512350 -776312 + L1PA13 LINE L1 5546 6163 0 700 318 95 22 chr4 183514347 183514706 -773956 - L2 LINE L2 0 3313 2929 2372 44 40 0 chr4 183515213 183515509 -773153 + AluY SINE Alu 1 308 -3 265 235 25 0 chr4 183515605 183515686 -772976 + (TA)n Simple_repeat Simple_repeat 1 83 0 243 0 0 0 chr4 183516752 183516779 -771883 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2108 102 3 3 chr4 183516782 183517065 -771597 - AluSq SINE Alu -30 283 1 380 281 144 14 chr4 183518694 183518840 -769822 + MIR SINE MIR 91 255 -7 869 143 0 14 chr4 183519288 183519428 -769234 + FLAM_C SINE Alu 1 138 -5 441 249 124 19 chr4 183519499 183519756 -768906 + L1M4 LINE L1 4408 4691 -1455 31 104 0 0 chr4 183519771 183519886 -768776 + AT_rich Low_complexity Low_complexity 1 115 0 2071 276 108 23 chr4 183519892 183520768 -767894 - L1ME3 LINE L1 -57 6105 5305 1876 160 10 3 chr4 183520768 183521075 -767587 - AluSx SINE Alu -3 309 1 2071 276 108 23 chr4 183521075 183522122 -766540 - L1ME3 LINE L1 -857 5305 4012 641 146 0 0 chr4 183522130 183522226 -766436 - AluJ/FLAM SINE Alu -216 96 1 761 240 6 6 chr4 183522226 183522397 -766265 + MER58B DNA MER1_type 171 341 0 335 314 98 63 chr4 183522397 183522674 -765988 + L1ME2 LINE L1 5658 5946 -218 461 287 66 0 chr4 183522845 183522981 -765681 + MIR SINE MIR 2 146 -116 1847 273 39 33 chr4 183523355 183524081 -764581 - L1ME3A LINE L1 -9 6230 5501 1127 254 54 31 chr4 183524126 183524641 -764021 - L1ME3A LINE L1 -924 5291 4765 612 275 130 35 chr4 183525174 183525690 -762972 - L1MEc LINE L1 -4636 1620 1015 533 232 5 113 chr4 183525716 183525910 -762752 - L1ME LINE L1 -556 5606 5434 438 263 67 47 chr4 183526298 183526494 -762168 - L1MEc LINE L1 -5202 1003 796 2261 171 29 7 chr4 183526494 183526910 -761752 + MSTB LTR MaLR 1 425 -1 438 263 67 47 chr4 183526910 183527055 -761607 - L1MEc LINE L1 -5409 796 655 447 319 81 25 chr4 183527398 183527718 -760944 - L1MEc LINE L1 -6014 382 45 23 54 0 0 chr4 183527799 183527836 -760826 + AT_rich Low_complexity Low_complexity 1 37 0 186 278 104 43 chr4 183527999 183528114 -760548 - MIR SINE MIR -130 132 11 24 77 0 0 chr4 183529044 183529096 -759566 + AT_rich Low_complexity Low_complexity 1 52 0 186 293 93 73 chr4 183529896 183530101 -758561 + L2 LINE L2 2769 2977 -337 241 314 57 0 chr4 183531161 183531231 -757431 + L2 LINE L2 3108 3181 -91 2061 108 7 0 chr4 183532794 183533093 -755569 + AluSx SINE Alu 2 302 0 912 167 46 11 chr4 183533122 183533296 -755366 - MLT2B2 LTR ERVL 0 515 336 * 1349 222 3 22 chr4 183533279 183533590 -755072 - MLT2B1 LTR ERVL -215 305 1 2434 66 0 31 chr4 183533890 183534209 -754453 + AluSc SINE Alu 1 309 0 1551 167 60 18 chr4 183534671 183534952 -753710 + AluJb SINE Alu 16 308 -4 405 0 0 0 chr4 183535711 183535756 -752906 + (TA)n Simple_repeat Simple_repeat 1 45 0 22 0 0 0 chr4 183537022 183537044 -751618 + AT_rich Low_complexity Low_complexity 1 22 0 3168 178 40 21 chr4 183538861 183539520 -749142 - LTR51 LTR ERV1 0 671 1 425 271 43 147 chr4 183539547 183539641 -749021 + L1MC4 LINE L1 6667 6769 -1226 1494 199 47 10 chr4 183539641 183539938 -748724 - AluJo SINE Alu -4 308 1 425 271 43 147 chr4 183539938 183540286 -748376 + L1MC4 LINE L1 6769 7063 -932 398 251 101 13 chr4 183540433 183540660 -748002 + L1MC4 LINE L1 7101 7347 -695 341 312 94 35 chr4 183540758 183541158 -747504 + L1MC4 LINE L1 7385 7811 -150 25 31 0 0 chr4 183541304 183541336 -747326 + AT_rich Low_complexity Low_complexity 1 32 0 1146 208 102 42 chr4 183542845 183542873 -745789 + MLT1A1 LTR MaLR 2 27 -338 1587 143 87 39 chr4 183542873 183543230 -745432 - THE1C LTR MaLR -1 374 1 1146 208 102 42 chr4 183543230 183543533 -745129 + MLT1A1 LTR MaLR 27 353 -12 440 70 127 0 chr4 183544187 183544258 -744404 - MADE1 DNA Mariner 0 80 1 233 175 38 12 chr4 183545307 183545387 -743275 + GA-rich Low_complexity Low_complexity 1 82 0 25 0 0 0 chr4 183545423 183545448 -743214 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr4 183545542 183545566 -743096 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr4 183545756 183545784 -742878 + AT_rich Low_complexity Low_complexity 1 28 0 352 311 62 53 chr4 183546282 183546491 -742171 - MIR SINE MIR -32 230 20 586 328 78 34 chr4 183546680 183547037 -741625 - MLT1J2 LTR MaLR 0 450 78 2674 88 6 0 chr4 183547950 183548303 -740359 - THE1A LTR MaLR 0 355 1 11819 94 1 0 chr4 183548303 183549880 -738782 - THE1A-int LTR MaLR 0 1580 2 2616 88 8 3 chr4 183549881 183550234 -738428 - THE1A LTR MaLR 0 355 1 985 304 70 46 chr4 183550700 183551312 -737350 - L2 LINE L2 -596 2718 2092 251 176 20 0 chr4 183552795 183552846 -735816 - MSTB2 LTR MaLR 0 457 406 292 155 28 0 chr4 183553250 183553321 -735341 + (TG)n Simple_repeat Simple_repeat 2 74 0 245 218 24 137 chr4 183553819 183553943 -734719 + MER91C DNA MER1_type 31 140 0 195 139 0 0 chr4 183553996 183554032 -734630 + (T)n Simple_repeat Simple_repeat 1 36 0 1830 178 11 14 chr4 183554490 183554856 -733806 - MLT1A1 LTR MaLR 0 365 1 408 244 12 0 chr4 183555970 183556056 -732606 + MIR3 SINE MIR 81 167 -41 707 242 151 18 chr4 183556733 183557018 -731644 - MLT1C LTR MaLR -2 465 181 483 221 0 101 chr4 183557026 183557225 -731437 + (TCTCTG)n Simple_repeat Simple_repeat 1 179 0 309 206 110 66 chr4 183557266 183557402 -731260 - L1MEc LINE L1 -6014 382 241 372 256 47 0 chr4 183557402 183557531 -731131 + (TCTCTG)n Simple_repeat Simple_repeat 1 135 0 2135 127 10 0 chr4 183557894 183558201 -730461 - AluSq SINE Alu -3 310 1 2121 139 0 7 chr4 183558428 183558737 -729925 - AluSx SINE Alu -5 307 1 278 234 117 120 chr4 183558799 183559217 -729445 + MLT1H LTR MaLR 110 526 -23 30 59 0 0 chr4 183559317 183559368 -729294 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr4 183559397 183559418 -729244 + AT_rich Low_complexity Low_complexity 1 21 0 33 90 0 0 chr4 183559492 183559581 -729081 + AT_rich Low_complexity Low_complexity 1 89 0 316 356 22 22 chr4 183559634 183559769 -728893 - HAL1b LINE L1 -580 768 634 228 248 132 76 chr4 183559778 183560254 -728408 - HAL1b LINE L1 -773 575 73 986 248 23 90 chr4 183560630 183561110 -727552 + L1MCb LINE L1 148 595 -5450 812 246 60 5 chr4 183561183 183561565 -727097 - L1MCb LINE L1 -2875 3689 3287 2977 258 48 32 chr4 183561580 183563201 -725461 - L1MCb LINE L1 -4851 1194 2 24 0 0 0 chr4 183563571 183563595 -725067 + AT_rich Low_complexity Low_complexity 1 24 0 359 241 135 38 chr4 183565134 183565267 -723395 + L1MC/D LINE L1 5677 5822 -1986 1836 137 164 24 chr4 183565759 183566131 -722531 + MSTA LTR MaLR 1 424 -4 300 310 161 7 chr4 183566186 183566341 -722321 - MIR SINE MIR -71 191 13 203 327 36 45 chr4 183566938 183567035 -721627 + L2 LINE L2 3205 3302 -11 186 43 0 0 chr4 183567035 183567058 -721604 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 203 327 36 45 chr4 183567058 183567070 -721592 + L2 LINE L2 3302 3313 0 2057 152 23 0 chr4 183567101 183567449 -721213 + MER46B DNA MER2_type 2 232 -4 2053 108 17 3 chr4 183569504 183569792 -718870 + AluSc SINE Alu 1 292 -17 23 0 0 0 chr4 183570182 183570205 -718457 + AT_rich Low_complexity Low_complexity 1 23 0 1347 208 89 16 chr4 183571678 183572058 -716604 - LTR52 LTR ERVL -5 416 9 1555 142 7 0 chr4 183572494 183572768 -715894 - MER67A LTR ERV1 -240 274 1 25 51 0 0 chr4 183572802 183572841 -715821 + AT_rich Low_complexity Low_complexity 1 39 0 825 201 11 6 chr4 183572983 183573162 -715500 - L1MD2 LINE L1 -18 6341 6162 543 164 17 26 chr4 183573348 183573482 -715180 - L1MC4 LINE L1 0 8042 6240 1451 299 48 24 chr4 183574479 183575127 -713535 + HERV16 LTR ERVL 1739 2331 -2665 1190 328 86 25 chr4 183575160 183577601 -711061 + HERV16 LTR ERVL 2478 5143 -621 222 259 37 37 chr4 183578263 183578344 -710318 + MIR3 SINE MIR 9 89 -119 234 105 0 0 chr4 183578527 183578565 -710097 + (TC)n Simple_repeat Simple_repeat 1 38 0 2177 113 0 10 chr4 183581074 183581385 -707277 - AluY SINE Alu 0 311 4 318 324 24 84 chr4 183582649 183582945 -705717 + L1ME LINE L1 230 507 -5698 251 132 0 0 chr4 183583004 183583042 -705620 + L1MA9 LINE L1 6069 6106 -206 595 218 27 0 chr4 183583042 183583152 -705510 + AluJb SINE Alu 150 262 -50 6749 122 30 3 chr4 183583247 183584303 -704359 - Tigger1 DNA MER2_type 0 2418 1334 4147 190 53 9 chr4 183584311 183585484 -703178 + L1PB4 LINE L1 4564 5820 -336 306 0 0 0 chr4 183585484 183585518 -703144 + (CA)n Simple_repeat Simple_repeat 2 35 0 4147 190 53 9 chr4 183585518 183585869 -702793 + L1PB4 LINE L1 5820 6154 -2 8339 136 27 9 chr4 183585893 183587225 -701437 - Tigger1 DNA MER2_type -1062 1356 1 418 248 45 19 chr4 183587233 183587569 -701093 + L1ME LINE L1 1921 2316 -4080 378 299 92 38 chr4 183587602 183588071 -700591 - L1M4 LINE L1 -3173 2973 2480 22 35 0 0 chr4 183588177 183588206 -700456 + AT_rich Low_complexity Low_complexity 1 29 0 2880 271 163 27 chr4 183589229 183590965 -697697 + L2 LINE L2 1196 3174 -139 183 162 0 0 chr4 183591198 183591235 -697427 + (TCCA)n Simple_repeat Simple_repeat 2 38 0 180 0 0 0 chr4 183592335 183592355 -696307 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 186 228 174 76 chr4 183592567 183592659 -696003 - L2 LINE L2 -4 3268 3168 225 143 0 0 chr4 183593471 183593513 -695149 - AluJo SINE Alu -1 301 260 972 199 19 29 chr4 183593513 183593719 -694943 - AluJo SINE Alu -108 204 1 216 354 52 10 chr4 183593838 183593934 -694728 + MIR SINE MIR 46 145 -63 2118 110 13 10 chr4 183594475 183594784 -693878 + AluSg SINE Alu 1 310 0 441 301 40 17 chr4 183595367 183595540 -693122 + MER63A DNA MER1_type 33 209 -1 202 309 157 36 chr4 183595637 183595886 -692776 - L2 LINE L2 -181 3091 2813 268 349 41 12 chr4 183595993 183596165 -692497 - L2 LINE L2 -577 2737 2561 23 0 0 0 chr4 183597258 183597281 -691381 + AT_rich Low_complexity Low_complexity 1 23 0 208 294 29 29 chr4 183597435 183597459 -691203 + MIR SINE MIR 24 47 -215 1919 142 7 16 chr4 183597459 183597762 -690900 - AluSx SINE Alu -12 300 1 208 294 29 29 chr4 183597762 183597805 -690857 + MIR SINE MIR 46 91 -171 199 353 52 26 chr4 183599336 183599452 -689210 + L2 LINE L2 3190 3308 -5 30 27 0 0 chr4 183603119 183603156 -685506 + AT_rich Low_complexity Low_complexity 1 37 0 2546 174 11 0 chr4 183603330 183603800 -684862 + L1MB2 LINE L1 5688 6162 -9 755 165 6 18 chr4 183604156 183604326 -684336 + GA-rich Low_complexity Low_complexity 1 168 0 2320 72 0 23 chr4 183604897 183605201 -683461 + AluY SINE Alu 2 298 -13 2192 119 0 0 chr4 183605974 183606284 -682378 + AluSg SINE Alu 1 310 0 485 302 0 0 chr4 183606825 183607004 -681658 + (CA)n Simple_repeat Simple_repeat 1 179 0 205 327 0 0 chr4 183607019 183607123 -681539 + (CA)n Simple_repeat Simple_repeat 1 104 0 1691 221 57 4 chr4 183608205 183608735 -679927 + L1MC4 LINE L1 7200 7706 -102 2501 230 95 29 chr4 183608785 183609533 -679129 - MER21B LTR ERV1 -44 819 23 381 228 0 13 chr4 183609559 183609638 -679024 - MER21B LTR ERV1 -773 90 13 449 225 0 17 chr4 183609699 183609819 -678843 + L1MC4 LINE L1 7925 8042 0 839 201 11 6 chr4 183610019 183610198 -678464 + L1MD2 LINE L1 6162 6341 -18 25 51 0 0 chr4 183610340 183610379 -678283 + AT_rich Low_complexity Low_complexity 1 39 0 1645 148 7 1 chr4 183610413 183610700 -677962 + MER67A LTR ERV1 1 422 -239 1468 187 97 24 chr4 183611123 183611503 -677159 + LTR52 LTR ERVL 9 416 -5 23 0 0 0 chr4 183612976 183612999 -675663 + AT_rich Low_complexity Low_complexity 1 23 0 2123 97 17 3 chr4 183613389 183613677 -674985 - AluSc SINE Alu -17 292 1 2080 152 23 0 chr4 183615732 183616080 -672582 - MER46B DNA MER2_type -4 232 2 207 327 36 45 chr4 183616111 183616123 -672539 - L2 LINE L2 0 3313 3302 186 43 0 0 chr4 183616123 183616146 -672516 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 207 327 36 45 chr4 183616146 183616243 -672419 - L2 LINE L2 -11 3302 3205 298 310 161 7 chr4 183616840 183616995 -671667 + MIR SINE MIR 13 191 -71 1830 137 164 24 chr4 183617050 183617422 -671240 - MSTA LTR MaLR -4 424 1 260 241 135 38 chr4 183617914 183618047 -670615 - L1MC/D LINE L1 -1986 5822 5677 180 250 36 83 chr4 183618935 183619019 -669643 - MIR3 SINE MIR -8 200 121 24 0 0 0 chr4 183619585 183619609 -669053 + AT_rich Low_complexity Low_complexity 1 24 0 3320 256 43 39 chr4 183619979 183621600 -667062 + L1MCb LINE L1 2 1638 -4851 897 238 63 8 chr4 183621615 183621997 -666665 + L1MCb LINE L1 3287 3689 -2875 1119 248 23 90 chr4 183622070 183622550 -666112 - L1MCb LINE L1 -5450 595 148 348 248 132 76 chr4 183622926 183623402 -665260 + HAL1b LINE L1 73 575 -773 316 356 22 22 chr4 183623411 183623546 -665116 + HAL1b LINE L1 634 768 -580 33 90 0 0 chr4 183623599 183623688 -664974 + AT_rich Low_complexity Low_complexity 1 89 0 21 0 0 0 chr4 183623762 183623783 -664879 + AT_rich Low_complexity Low_complexity 1 21 0 30 59 0 0 chr4 183623812 183623863 -664799 + AT_rich Low_complexity Low_complexity 1 51 0 405 242 159 107 chr4 183623963 183624442 -664220 - MLT1H LTR MaLR -23 526 23 2090 139 0 7 chr4 183624443 183624752 -663910 + AluSx SINE Alu 1 307 -5 2105 127 10 0 chr4 183624979 183625286 -663376 + AluSq SINE Alu 1 310 -3 231 291 101 13 chr4 183625306 183625385 -663277 + L1MB8 LINE L1 3 88 -6771 1250 159 35 39 chr4 183625432 183625477 -663185 - L1PA16 LINE L1 -9 6157 6113 2926 80 57 12 chr4 183625477 183625518 -663144 - MLT2A1 LTR ERVL 0 444 406 425 19 19 0 chr4 183625518 183625572 -663090 + (TA)n Simple_repeat Simple_repeat 1 55 0 2926 80 57 12 chr4 183625572 183625955 -662707 - MLT2A1 LTR ERVL -38 406 1 1250 159 35 39 chr4 183625955 183626167 -662495 - L1PA16 LINE L1 -53 6113 5901 1959 210 13 106 chr4 183626167 183626227 -662435 + L1MB8 LINE L1 91 155 -6704 1908 152 0 3 chr4 183626227 183626546 -662116 - AluSx SINE Alu 0 318 1 1959 210 13 106 chr4 183626546 183627021 -661641 + L1MB8 LINE L1 155 577 -6282 653 197 27 45 chr4 183627049 183627265 -661397 - MER31B LTR ERV1 -147 319 1 5775 214 80 73 chr4 183627275 183628299 -660363 + L1MB8 LINE L1 3344 4360 -2629 1162 224 14 0 chr4 183628299 183628509 -660153 + MER8 DNA MER2_type 21 233 -6 2368 141 22 10 chr4 183628509 183628920 -659742 + L1MC1 LINE L1 5918 6333 0 5775 214 80 73 chr4 183628920 183630403 -658259 + L1MB8 LINE L1 4360 6089 -900 288 0 0 0 chr4 183630403 183630435 -658227 + (CA)n Simple_repeat Simple_repeat 2 33 0 5775 214 80 73 chr4 183630435 183631341 -657321 + L1MB8 LINE L1 6089 6988 -1 395 359 29 10 chr4 183632410 183632616 -656046 + MIR SINE MIR 12 221 -41 22 0 0 0 chr4 183633013 183633035 -655627 + AT_rich Low_complexity Low_complexity 1 22 0 3967 280 199 27 chr4 183633104 183635044 -653618 - L2 LINE L2 -12 3301 913 1559 201 111 36 chr4 183635044 183635511 -653151 - MLT1D LTR MaLR -3 502 1 3967 280 199 27 chr4 183635511 183635859 -652803 - L2 LINE L2 -2400 913 626 886 284 91 29 chr4 183636674 183637156 -651506 - LTR33 LTR ERVL -7 514 3 298 339 106 67 chr4 183638474 183638804 -649858 - L2 LINE L2 -7 3265 2923 2154 116 3 3 chr4 183639204 183639498 -649164 - AluSx SINE Alu -18 294 1 186 222 0 0 chr4 183639629 183639683 -648979 + (TA)n Simple_repeat Simple_repeat 1 54 0 313 231 19 19 chr4 183639755 183639859 -648803 + (TA)n Simple_repeat Simple_repeat 2 105 0 362 295 0 16 chr4 183640139 183640268 -648394 + MLT1K LTR MaLR 445 571 -17 378 0 0 0 chr4 183640663 183640705 -647957 + (CA)n Simple_repeat Simple_repeat 2 43 0 185 328 33 0 chr4 183641799 183641860 -646802 - L2 LINE L2 -4 3309 3247 1227 194 126 60 chr4 183641961 183642309 -646353 - MLT1C LTR MaLR 0 467 83 1424 187 76 9 chr4 183642309 183642651 -646011 + MLT1A1 LTR MaLR 1 365 0 1227 194 126 60 chr4 183642651 183642739 -645923 - MLT1C LTR MaLR -384 83 2 1547 175 10 27 chr4 183644435 183644732 -643930 - AluJo SINE Alu -13 299 8 25 0 0 0 chr4 183644814 183644839 -643823 + AT_rich Low_complexity Low_complexity 1 25 0 267 333 16 0 chr4 183645215 183645338 -643324 - LTR33 LTR ERVL -11 510 386 753 320 32 7 chr4 183645388 183645666 -642996 - LTR33 LTR ERVL -236 285 1 932 207 17 13 chr4 183645690 183645922 -642740 - MER96B DNA MER1_type? -182 235 3 333 0 0 0 chr4 183647097 183647134 -641528 + (TG)n Simple_repeat Simple_repeat 1 37 0 734 240 9 30 chr4 183647386 183647619 -641043 - MLT1D LTR MaLR 0 505 278 2097 82 60 0 chr4 183647925 183648207 -640455 + AluSg SINE Alu 1 299 -11 3619 148 47 85 chr4 183648371 183649368 -639294 + pTR5 LTR ERV1 742 2020 -418 332 222 0 0 chr4 183649372 183649453 -639209 + LTR30 LTR ERV1 544 624 -98 1451 80 4 26 chr4 183649473 183649699 -638963 + pTR5 LTR ERV1 172 392 -2046 225 400 22 0 chr4 183650165 183650255 -638407 + L2 LINE L2 3143 3234 -38 330 183 0 0 chr4 183651540 183651611 -637051 + CT-rich Low_complexity Low_complexity 3 73 0 201 50 33 67 chr4 183651613 183651673 -636989 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 719 181 24 93 chr4 183651740 183651945 -636717 + MER3 DNA MER1_type 1 191 -18 290 307 27 47 chr4 183652290 183652440 -636222 + MIR3 SINE MIR 47 193 -15 2155 100 0 0 chr4 183652599 183652878 -635784 - AluY SINE Alu -32 279 1 261 0 0 0 chr4 183652925 183652954 -635708 + (CA)n Simple_repeat Simple_repeat 2 30 0 183 186 0 0 chr4 183652988 183653031 -635631 + T-rich Low_complexity Low_complexity 1 43 0 216 135 0 0 chr4 183653234 183653271 -635391 + (TG)n Simple_repeat Simple_repeat 2 38 0 212 189 0 0 chr4 183654257 183654294 -634368 + A-rich Low_complexity Low_complexity 4 40 0 446 33 0 16 chr4 183655749 183655810 -632852 + (TA)n Simple_repeat Simple_repeat 1 60 0 271 329 56 0 chr4 183655880 183655981 -632681 - MIR SINE MIR -87 121 16 21 0 0 0 chr4 183656016 183656037 -632625 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr4 183656152 183656194 -632468 + AT_rich Low_complexity Low_complexity 1 42 0 317 315 74 9 chr4 183656200 183656308 -632354 - L2 LINE L2 0 3272 3158 2182 108 0 10 chr4 183656551 183656865 -631797 - AluSx SINE Alu -1 311 1 21 0 0 0 chr4 183657237 183657258 -631404 + AT_rich Low_complexity Low_complexity 1 21 0 1802 91 0 4 chr4 183657400 183657631 -631031 - AluSg/x SINE Alu -7 303 74 243 88 0 0 chr4 183660253 183660287 -628375 + (TA)n Simple_repeat Simple_repeat 2 35 0 25 51 0 0 chr4 183660293 183660332 -628330 + AT_rich Low_complexity Low_complexity 1 39 0 376 318 111 0 chr4 183660757 183660949 -627713 - MIR SINE MIR -4 258 40 328 314 44 20 chr4 183661050 183661298 -627364 + L1MEc LINE L1 114 367 -6029 * 980 247 70 58 chr4 183661293 183661762 -626900 + L1M4 LINE L1 4532 5006 -1140 254 346 99 0 chr4 183663408 183663509 -625153 + L2 LINE L2 3160 3270 -2 1791 200 77 0 chr4 183663557 183663947 -624715 - MSTB LTR MaLR 0 426 7 1358 217 87 3 chr4 183664108 183664148 -624514 - MLT2B1 LTR ERVL 0 515 480 641 45 11 0 chr4 183664148 183664237 -624425 + (TAGA)n Simple_repeat Simple_repeat 2 91 0 1358 217 87 3 chr4 183664237 183664622 -624040 - MLT2B1 LTR ERVL -35 480 1 2348 77 7 3 chr4 183665159 183665457 -623205 - AluSp SINE Alu -14 299 1 380 310 57 6 chr4 183666223 183666381 -622281 + MIR SINE MIR 66 231 -31 385 249 104 50 chr4 183666464 183666705 -621957 - MLT1J LTR MaLR -26 485 232 182 125 0 25 chr4 183666878 183666918 -621744 + (TCTCTG)n Simple_repeat Simple_repeat 4 42 0 237 65 0 0 chr4 183666965 183666996 -621666 + (GA)n Simple_repeat Simple_repeat 2 32 0 279 370 88 6 chr4 183667182 183667363 -621299 + MIR3 SINE MIR 12 207 -1 1770 179 55 24 chr4 183667798 183668217 -620445 + MSTB1 LTR MaLR 1 432 0 851 183 136 0 chr4 183669315 183669566 -619096 + L1MA8 LINE L1 6005 6289 -2 797 295 0 3 chr4 183669822 183670142 -618520 - AluY SINE Alu 0 319 1 1122 148 5 46 chr4 183672067 183672283 -616379 + MER20 DNA MER1_type 13 219 0 226 295 133 9 chr4 183672450 183672555 -616107 + L2 LINE L2 3193 3310 -3 1568 52 5 0 chr4 183672603 183672796 -615866 + L1PA7 LINE L1 5950 6143 -11 578 267 63 11 chr4 183673907 183674098 -614564 - MIR SINE MIR -57 205 5 926 295 42 26 chr4 183674226 183674680 -613982 + MLT1C LTR MaLR 7 467 0 6728 62 11 2 chr4 183674817 183676532 -612130 - L1PA7 LINE L1 -5 6149 4420 1340 147 20 0 chr4 183676533 183676778 -611884 - L1P LINE L1 -3341 2805 2556 22849 122 11 69 chr4 183676778 183681532 -607130 - L1P3 LINE L1 -1725 4736 4 2287 108 10 0 chr4 183681983 183682290 -606372 - AluSg SINE Alu 0 310 1 1596 133 87 23 chr4 183683054 183683399 -605263 + MSTA LTR MaLR 1 367 -61 2115 97 11 0 chr4 183683456 183683773 -604889 - AluSg SINE Alu 0 320 1 22 35 0 0 chr4 183688296 183688325 -600337 + AT_rich Low_complexity Low_complexity 1 29 0 502 206 28 14 chr4 183688389 183688530 -600132 + L1M4 LINE L1 4536 4678 -1468 359 249 73 57 chr4 183688552 183688797 -599865 + L1M4 LINE L1 4733 4981 -1165 1329 143 27 140 chr4 183688802 183689173 -599489 + MER7A DNA MER2_type 3 329 -17 251 195 0 0 chr4 183689174 183689215 -599447 + MER7A DNA MER2_type 306 346 0 392 300 42 1 chr4 183689237 183689669 -598993 + L1M2 LINE L1 5005 5459 -705 331 258 89 16 chr4 183691599 183691723 -596939 - L1ME4a LINE L1 -3 6118 5986 316 268 153 38 chr4 183692167 183692350 -596312 - L1MC4a LINE L1 -1886 5922 5719 583 315 42 13 chr4 183692392 183692571 -596091 + MIR SINE MIR 2 191 -71 335 213 0 0 chr4 183692571 183692651 -596011 - MER116 DNA Mariner 0 80 1 583 315 42 13 chr4 183692651 183692709 -595953 + MIR SINE MIR 191 246 -16 250 239 86 60 chr4 183692747 183692864 -595798 - L1MC4a LINE L1 -480 5684 5565 220 239 0 33 chr4 183692957 183693049 -595613 + CT-rich Low_complexity Low_complexity 2 90 0 232 289 19 39 chr4 183693799 183693903 -594759 + L2 LINE L2 1607 1708 -1606 192 179 0 0 chr4 183694200 183694239 -594423 + (CATA)n Simple_repeat Simple_repeat 2 40 0 2167 122 0 0 chr4 183694728 183695031 -593631 - AluSg SINE Alu -7 303 1 222 195 21 62 chr4 183695888 183695998 -592664 + MIR SINE MIR 100 201 -61 1587 240 112 38 chr4 183696084 183696667 -591995 - MLT1E2 LTR MaLR 0 626 1 265 318 12 12 chr4 183697721 183697806 -590856 + MIR SINE MIR 22 106 -102 332 348 53 21 chr4 183698116 183698303 -590359 - MIR SINE MIR -44 218 26 1142 163 10 85 chr4 183698673 183698979 -589683 - L1MC3 LINE L1 -7 7778 7496 481 262 85 15 chr4 183698979 183699034 -589628 - MLT1H1 LTR MaLR -225 324 274 429 95 0 0 chr4 183699034 183699097 -589565 + (CA)n Simple_repeat Simple_repeat 1 63 0 481 262 85 15 chr4 183699097 183699289 -589373 - MLT1H1 LTR MaLR -275 274 33 2437 90 0 0 chr4 183701026 183701337 -587325 + AluY SINE Alu 1 311 0 183 162 0 0 chr4 183701671 183701708 -586954 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 30 27 0 0 chr4 183701823 183701860 -586802 + AT_rich Low_complexity Low_complexity 1 37 0 243 135 0 0 chr4 183703414 183703451 -585211 + MER5A DNA MER1_type 35 71 -118 6786 124 120 100 chr4 183703922 183705188 -583474 - pTR5 LTR ERV1 0 2438 1128 2819 16 0 0 chr4 183705188 183705501 -583161 + AluYb8 SINE Alu 1 313 -5 6786 124 120 100 chr4 183705501 183705896 -582766 - pTR5 LTR ERV1 -1310 1128 743 302 258 0 21 chr4 183706550 183706643 -582019 + L1MC/D LINE L1 5728 5818 -1990 206 320 10 0 chr4 183706785 183706885 -581777 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 1464 113 66 19 chr4 183707050 183707066 -581596 - L1MA2 LINE L1 -2 6302 6288 2610 157 133 18 chr4 183707066 183707614 -581048 + LTR36 LTR ERV1 1 611 0 1464 113 66 19 chr4 183707614 183707854 -580808 - L1MA2 LINE L1 -16 6288 6034 587 62 0 12 chr4 183708193 183708273 -580389 - MADE1 DNA Mariner -1 79 1 245 309 12 0 chr4 183708936 183709017 -579645 + MIR3 SINE MIR 121 202 -6 2012 114 0 39 chr4 183709504 183709811 -578851 + AluSc SINE Alu 1 295 -14 219 197 33 82 chr4 183710865 183710926 -577736 - MIR3 SINE MIR -27 181 124 2024 118 20 17 chr4 183711272 183711569 -577093 + AluSg SINE Alu 1 298 -12 206 253 12 0 chr4 183711787 183711870 -576792 + (TATG)n Simple_repeat Simple_repeat 3 86 0 255 326 95 20 chr4 183713167 183713314 -575348 - L2 LINE L2 -243 3029 2872 27 0 0 0 chr4 183714671 183714698 -573964 + AT_rich Low_complexity Low_complexity 1 27 0 384 283 59 82 chr4 183714992 183715211 -573451 + MIR SINE MIR 36 249 -13 270 0 0 0 chr4 183715520 183715550 -573112 + (A)n Simple_repeat Simple_repeat 1 30 0 1820 201 43 92 chr4 183715550 183716216 -572446 - LTR8A LTR ERV1 -60 667 34 1370 120 120 0 chr4 183716634 183716867 -571795 + L1PA16 LINE L1 5894 6154 -12 447 373 56 16 chr4 183717749 183718071 -570591 + L1ME LINE L1 5435 5769 -352 26 30 0 0 chr4 183718132 183718165 -570497 + AT_rich Low_complexity Low_complexity 1 33 0 554 345 75 27 chr4 183718620 183718913 -569749 - L2 LINE L2 -547 2767 2461 926 290 27 21 chr4 183718949 183719435 -569227 - L1M4 LINE L1 -2191 3955 3467 2551 180 100 7 chr4 183720102 183720662 -568000 + LTR26E LTR ERV1 1 612 -10 1902 220 29 64 chr4 183720803 183720893 -567769 - MER74A LTR ERVL 0 558 466 1817 104 4 4 chr4 183720893 183721134 -567528 + AluSx SINE Alu 1 241 -71 1902 220 29 64 chr4 183721134 183721621 -567041 - MER74A LTR ERVL -92 466 1 3937 187 100 32 chr4 183722246 183723576 -565086 + L1MB8 LINE L1 4754 6177 -1 26 64 0 0 chr4 183723627 183723674 -564988 + AT_rich Low_complexity Low_complexity 1 47 0 888 223 28 0 chr4 183724458 183724669 -563993 + L1M4 LINE L1 5482 5698 -480 207 224 53 53 chr4 183724772 183724848 -563814 - MIR SINE MIR -87 121 46 1770 266 117 62 chr4 183725927 183726631 -562031 + L2 LINE L2 467 1234 -2080 1933 120 33 0 chr4 183726631 183726932 -561730 + AluSx SINE Alu 1 310 0 1770 266 117 62 chr4 183726932 183727129 -561533 + L2 LINE L2 1234 1419 -1895 1456 181 92 5 chr4 183727131 183727186 -561476 - MLT2C2 LTR ERVL 0 397 348 236 30 30 0 chr4 183727186 183727219 -561443 + (TAGA)n Simple_repeat Simple_repeat 3 36 0 1456 181 92 5 chr4 183727219 183727531 -561131 - MLT2C2 LTR ERVL -49 348 1 268 333 21 0 chr4 183727531 183727624 -561038 + L2 LINE L2 1417 1511 -1803 746 147 71 18 chr4 183727629 183727799 -560863 - MER20 DNA MER1_type -3 216 38 1494 265 221 20 chr4 183727822 183728464 -560198 + L2 LINE L2 1513 2283 -1031 343 278 105 19 chr4 183728467 183728629 -560033 + MLT1H1 LTR MaLR 52 227 -322 1276 327 45 26 chr4 183728900 183729112 -559550 + L2 LINE L2 2356 2563 -751 1388 212 94 29 chr4 183729112 183729527 -559135 + LTR47B LTR ERVL 2 443 0 1276 327 45 26 chr4 183729527 183729919 -558743 + L2 LINE L2 2563 2971 -343 1539 171 58 80 chr4 183729982 183730380 -558282 - MLT1B LTR MaLR -1 389 1 197 189 0 0 chr4 183733383 183733420 -555242 - L2 LINE L2 -5 3267 3231 446 325 69 29 chr4 183733912 183734158 -554504 - MIR SINE MIR -3 259 4 332 327 27 9 chr4 183735430 183735540 -553122 + MIR SINE MIR 50 161 -101 449 234 62 8 chr4 183735540 183735668 -552994 + MIR SINE MIR 127 261 -1 349 292 95 15 chr4 183735679 183735816 -552846 - MIR SINE MIR -114 148 1 199 299 167 11 chr4 183736788 183736962 -551700 - L2 LINE L2 -505 2809 2609 2090 113 7 0 chr4 183737067 183737351 -551311 + AluSc SINE Alu 1 286 -23 34 24 0 0 chr4 183737354 183737395 -551267 + AT_rich Low_complexity Low_complexity 1 41 0 540 311 44 16 chr4 183739347 183739595 -549067 - MIR SINE MIR -2 260 6 2331 147 98 3 chr4 183739880 183740269 -548393 + MSTB LTR MaLR 1 426 0 187 276 0 17 chr4 183740311 183740369 -548293 + L2 LINE L2 2626 2682 -632 1655 147 11 1 chr4 183740371 183740668 -547994 - L1P4 LINE L1 -544 5622 5318 658 281 93 42 chr4 183740716 183741093 -547569 + L2 LINE L2 2916 3311 -2 2351 102 0 0 chr4 183741305 183741609 -547053 - AluSc SINE Alu -5 304 1 314 282 215 0 chr4 183742567 183742730 -545932 - L2 LINE L2 -2 3311 3114 600 226 191 0 chr4 183742959 183743163 -545499 + MLT1H1 LTR MaLR 311 553 -2 189 176 338 14 chr4 183743628 183743702 -544960 + L2 LINE L2 1932 2029 -1285 215 382 26 20 chr4 183743705 183743857 -544805 + L2 LINE L2 2660 2812 -502 2219 90 7 7 chr4 183744422 183744722 -543940 + AluSg SINE Alu 1 300 -10 473 259 74 95 chr4 183747217 183747542 -541120 - L2 LINE L2 0 3313 2996 330 296 74 25 chr4 183747939 183748101 -540561 + L3 LINE CR1 702 871 -706 758 314 133 28 chr4 183748406 183748874 -539788 + L3 LINE CR1 1044 1560 -17 291 309 125 29 chr4 183749297 183749433 -539229 - L2 LINE L2 0 3272 3124 2078 54 0 54 chr4 183749908 183750186 -538476 + AluY SINE Alu 39 301 -10 423 288 37 13 chr4 183750598 183750914 -537748 + MER93a LTR ERV1 37 369 -4 2234 116 0 22 chr4 183750924 183751244 -537418 - AluSq SINE Alu 0 313 1 27 29 0 0 chr4 183752531 183752565 -536097 + AT_rich Low_complexity Low_complexity 1 34 0 444 174 43 0 chr4 183753647 183753739 -534923 - MER5A DNA MER1_type -83 106 11 238 224 60 30 chr4 183753840 183753907 -534755 + MER116 DNA Mariner 1 69 -11 239 210 65 32 chr4 183753914 183753976 -534686 + MER116 DNA Mariner 1 64 -16 689 309 162 33 chr4 183754150 183754639 -534023 - MLT1K LTR MaLR -2 586 35 492 240 94 23 chr4 183754687 183754966 -533696 + MLT1I LTR MaLR 75 407 -2 2184 108 0 3 chr4 183755941 183756227 -532435 + AluSx SINE Alu 1 285 -27 2644 113 5 22 chr4 183756421 183756791 -531871 + THE1B LTR MaLR 1 364 0 12896 81 4 1 chr4 183756791 183758366 -530296 + THE1B-int LTR MaLR 1 1580 0 2514 114 17 20 chr4 183758369 183758727 -529935 + THE1B LTR MaLR 4 360 -4 1813 106 110 0 chr4 183758728 183759001 -529661 + AluSc SINE Alu 1 303 -6 341 354 9 0 chr4 183759090 183759203 -529459 + L2 LINE L2 3156 3269 -3 2232 95 0 13 chr4 183759347 183759651 -529011 + AluY SINE Alu 1 300 -11 271 323 31 55 chr4 183760476 183760603 -528059 + L2 LINE L2 3190 3313 0 328 259 52 52 chr4 183761116 183761139 -527523 + MIR SINE MIR 116 138 -124 2046 111 7 3 chr4 183761139 183761427 -527235 + AluSx SINE Alu 21 309 -3 328 259 52 52 chr4 183761427 183761538 -527124 + MIR SINE MIR 137 250 -12 1862 209 29 56 chr4 183812482 183813037 -475625 + MER67A LTR ERV1 1 540 -3 180 293 19 85 chr4 183813037 183813143 -475519 + MIR3 SINE MIR 88 186 -22 5202 124 10 3 chr4 183813177 183814070 -474592 - L1PA16 LINE L1 -13 6153 5221 327 25 0 0 chr4 183815380 183815420 -473242 + (TG)n Simple_repeat Simple_repeat 1 40 0 261 281 34 22 chr4 183815461 183815550 -473112 - MIR SINE MIR -114 148 59 765 164 0 8 chr4 183816083 183816217 -472445 + FLAM_C SINE Alu 1 133 0 1030 262 103 11 chr4 183816363 183816741 -471921 + L1M4 LINE L1 4499 4911 -1235 1425 271 66 63 chr4 183816765 183817367 -471295 + MLT1E2 LTR MaLR 23 626 0 1224 242 53 22 chr4 183817418 183817872 -470790 + LTR37B LTR ERV1 1 468 0 215 211 35 0 chr4 183817951 183818008 -470654 + (TAAA)n Simple_repeat Simple_repeat 3 61 0 294 364 132 0 chr4 183819297 183819426 -469236 + MIR3 SINE MIR 35 180 -28 1516 203 10 23 chr4 183820868 183821178 -467484 + AluJo SINE Alu 5 310 -2 21 0 0 0 chr4 183821178 183821199 -467463 + AT_rich Low_complexity Low_complexity 1 21 0 185 65 32 0 chr4 183821541 183821572 -467090 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 192 355 65 0 chr4 183821667 183821774 -466888 + MIR3 SINE MIR 89 202 -6 23 68 0 0 chr4 183822333 183822377 -466285 + AT_rich Low_complexity Low_complexity 1 44 0 235 230 40 0 chr4 183823342 183823416 -465246 + (TA)n Simple_repeat Simple_repeat 2 78 0 40 65 0 28 chr4 183823535 183823643 -465019 + AT_rich Low_complexity Low_complexity 1 105 0 1773 183 13 45 chr4 183823844 183824221 -464441 + MLT1A1 LTR MaLR 1 365 0 183 100 0 0 chr4 183824281 183824311 -464351 + (TA)n Simple_repeat Simple_repeat 2 31 0 1630 266 107 41 chr4 183824556 183826033 -462629 + L1ME LINE L1 6 1587 -4493 838 269 102 23 chr4 183826089 183826736 -461926 + L1ME LINE L1 1754 2403 -3677 462 291 104 67 chr4 183826822 183826966 -461696 + L1ME LINE L1 3645 3782 -2298 1758 92 0 0 chr4 183826966 183827195 -461467 - AluY SINE Alu -9 302 74 462 291 104 67 chr4 183827195 183827455 -461207 + L1ME LINE L1 3782 4064 -2016 1309 301 115 22 chr4 183828084 183828754 -459908 + L1MEc LINE L1 925 1656 -5631 2569 250 50 20 chr4 183828817 183829968 -458694 + L1MEc LINE L1 2882 4038 -3068 1707 269 76 27 chr4 183829979 183830727 -457935 + L1M2 LINE L1 9 793 -6237 * 10965 171 23 23 chr4 183830714 183833053 -455609 + L1M2 LINE L1 4063 6404 -743 526 288 141 0 chr4 183833081 183833251 -455411 - MIR SINE MIR -30 232 39 210 71 0 0 chr4 183835677 183835705 -452957 + (CAAT)n Simple_repeat Simple_repeat 3 30 0 613 330 119 42 chr4 183836426 183836640 -452022 + L2 LINE L2 2002 2198 -1116 2266 80 0 3 chr4 183836640 183836953 -451709 + AluSg SINE Alu 1 312 0 613 330 119 42 chr4 183836953 183837525 -451137 + L2 LINE L2 2198 2850 -464 274 274 10 142 chr4 183837589 183837786 -450876 + L2 LINE L2 2914 3084 -188 296 273 33 93 chr4 183838050 183838200 -450462 + L2 LINE L2 3168 3308 -5 231 36 0 0 chr4 183838234 183838262 -450400 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 2161 116 0 0 chr4 183838262 183838539 -450123 - AluSc SINE Alu -32 277 1 431 251 139 0 chr4 183838680 183838895 -449767 + L1ME4a LINE L1 5588 5832 -289 4918 152 25 5 chr4 183838924 183840316 -448346 - L1PA13 LINE L1 -33 6130 4713 671 142 0 0 chr4 183840319 183840432 -448230 - L1PA13 LINE L1 -2546 3600 3488 2396 60 40 0 chr4 183840965 183841263 -447399 - AluY SINE Alu -1 310 1 207 0 0 0 chr4 183841599 183841622 -447040 + (TAA)n Simple_repeat Simple_repeat 2 24 0 305 343 48 27 chr4 183841681 183841827 -446835 + L1MA9 LINE L1 1455 1603 -5565 11096 229 43 33 chr4 183841949 183843197 -445465 + L1MA9 LINE L1 1559 2794 -4373 194 0 39 0 chr4 183843197 183843223 -445439 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 11096 229 43 33 chr4 183843223 183844850 -443812 + L1MA9 LINE L1 2794 4404 -2763 1973 132 38 0 chr4 183844850 183845138 -443524 + AluSp SINE Alu 1 299 -14 11096 229 43 33 chr4 183845138 183847256 -441406 + L1MA9 LINE L1 4404 6290 -877 3460 173 40 10 chr4 183847271 183847708 -440954 + MER44D DNA MER2_type 9 474 -2113 1912 178 0 0 chr4 183847708 183848017 -440645 + AluSx SINE Alu 1 309 -3 3460 173 40 10 chr4 183848017 183848255 -440407 + MER44D DNA MER2_type 474 704 -1 3053 208 84 28 chr4 183848256 183848756 -439906 + L1MA9 LINE L1 6290 6761 -572 297 0 0 0 chr4 183848756 183848789 -439873 + (TA)n Simple_repeat Simple_repeat 1 33 0 3053 208 84 28 chr4 183848789 183849277 -439385 + L1MA9 LINE L1 6761 7333 0 381 276 106 51 chr4 183850166 183850383 -438279 + LTR16A LTR ERVL 22 250 -200 1263 377 27 21 chr4 183850388 183851659 -437003 + ERVL LTR ERVL 3780 5057 -707 466 239 159 31 chr4 183852632 183852795 -435867 + MIR SINE MIR 79 262 0 515 221 60 13 chr4 183852843 183852992 -435670 - MIR SINE MIR -49 213 59 2380 69 0 0 chr4 183853206 183853496 -435166 + AluY SINE Alu 1 290 -21 240 35 0 0 chr4 183853923 183853952 -434710 + (GA)n Simple_repeat Simple_repeat 2 30 0 3265 190 31 23 chr4 183853958 183854728 -433934 + L1MB8 LINE L1 5403 6178 0 541 298 164 19 chr4 183854978 183855398 -433264 + L1ME4a LINE L1 5629 6109 -12 23 0 0 0 chr4 183855406 183855429 -433233 + AT_rich Low_complexity Low_complexity 1 23 0 1313 309 68 44 chr4 183855946 183856609 -432053 + MER115 DNA AcHobo 1 679 -14 208 248 177 18 chr4 183856950 183857063 -431599 + MIR SINE MIR 76 206 -56 6956 42 10 45 chr4 183857811 183858768 -429894 + SVA Other Other 16 939 -447 2254 31 0 0 chr4 183858868 183859129 -429533 + AluY SINE Alu 40 300 -11 2081 91 80 0 chr4 183859504 183859790 -428872 - AluSq SINE Alu -4 309 1 550 210 36 7 chr4 183860004 183860142 -428520 + MLT1A1 LTR MaLR 1 142 -223 4790 145 27 10 chr4 183860146 183860459 -428203 - L1PB4 LINE L1 -3 6153 5847 2425 88 0 0 chr4 183860459 183860764 -427898 - AluY SINE Alu -6 305 1 4790 145 27 10 chr4 183860764 183861423 -427239 - L1PB4 LINE L1 -309 5847 5162 2757 230 13 0 chr4 183861411 183862114 -426548 + L1PB4 LINE L1 4447 5158 -988 * 607 234 19 13 chr4 183862132 183862290 -426372 + MLT1A1 LTR MaLR 197 355 -10 566 294 106 19 chr4 183862382 183862750 -425912 + L1MEc LINE L1 1268 1667 -4729 1829 107 4 44 chr4 183862890 183863160 -425502 - AluSg SINE Alu -51 259 1 189 288 45 0 chr4 183863569 183863635 -425027 - MIR SINE MIR -108 154 86 315 320 115 19 chr4 183865386 183865542 -423120 + MIR SINE MIR 32 202 -60 192 179 0 0 chr4 183866010 183866049 -422613 + (TG)n Simple_repeat Simple_repeat 2 40 0 2048 101 56 3 chr4 183866262 183866550 -422112 + AluSc SINE Alu 6 308 -1 24 96 0 0 chr4 183866856 183866929 -421733 + AT_rich Low_complexity Low_complexity 1 73 0 2048 83 18 0 chr4 183867223 183867660 -421002 + AluSx SINE Alu 1 442 0 189 107 0 0 chr4 183867660 183867688 -420974 + (GGGA)n Simple_repeat Simple_repeat 2 29 0 950 148 0 13 chr4 183868609 183868764 -419898 + FRAM SINE Alu 23 175 -1 230 158 0 0 chr4 183868804 183868842 -419820 - L1M2 LINE L1 -652 5660 5623 30 59 0 0 chr4 183869116 183869167 -419495 + AT_rich Low_complexity Low_complexity 1 51 0 1508 178 54 0 chr4 183869419 183869596 -419066 - AluJb SINE Alu 0 309 111 363 44 0 0 chr4 183869596 183869641 -419021 + (TG)n Simple_repeat Simple_repeat 2 46 0 1508 178 54 0 chr4 183869641 183869750 -418912 - AluJb SINE Alu -198 111 9 189 171 0 0 chr4 183870251 183870286 -418376 + T-rich Low_complexity Low_complexity 1 35 0 315 286 101 108 chr4 183871379 183871790 -416872 + L1ME4a LINE L1 4240 4646 -1500 2249 98 0 3 chr4 183871790 183872085 -416577 - AluSx SINE Alu -18 294 1 315 286 101 108 chr4 183872085 183872337 -416325 + L1ME4a LINE L1 4646 4898 -1248 27 49 0 0 chr4 183872554 183872595 -416067 + AT_rich Low_complexity Low_complexity 1 41 0 229 247 72 52 chr4 183872647 183872744 -415918 + MIR SINE MIR 1 99 -163 2187 203 29 36 chr4 183872749 183872808 -415854 - MER54A LTR ERVL 0 644 586 441 0 0 0 chr4 183872808 183872857 -415805 + (TA)n Simple_repeat Simple_repeat 1 49 0 1876 109 14 51 chr4 183872865 183873158 -415504 - AluSp SINE Alu -31 282 1 2187 203 29 36 chr4 183873158 183873930 -414732 - MER54A LTR ERVL -65 579 12 261 0 0 0 chr4 183873941 183873970 -414692 + (CA)n Simple_repeat Simple_repeat 1 29 0 387 247 102 0 chr4 183873973 183874118 -414544 + MIR SINE MIR 99 262 0 441 296 31 64 chr4 183874156 183874575 -414087 + L1ME4a LINE L1 5267 5671 -2137 22 0 0 0 chr4 183875013 183875035 -413627 + AT_rich Low_complexity Low_complexity 1 22 0 2378 99 0 0 chr4 183875130 183875423 -413239 - AluSq SINE Alu -20 293 1 556 295 135 75 chr4 183876805 183877056 -411606 + L3 LINE CR1 553 788 -789 854 212 0 0 chr4 183877056 183877226 -411436 + FAM SINE Alu 1 170 -5 556 295 135 75 chr4 183877226 183877493 -411169 + L3 LINE CR1 788 1102 -475 22 70 0 0 chr4 183877785 183877828 -410834 + AT_rich Low_complexity Low_complexity 1 43 0 214 402 0 0 chr4 183877927 183878009 -410653 + L2 LINE L2 3191 3272 0 28 99 0 0 chr4 183878657 183878748 -409914 + AT_rich Low_complexity Low_complexity 1 91 0 231 247 24 24 chr4 183878968 183879053 -409609 + L1ME4a LINE L1 5956 6040 -81 228 67 0 0 chr4 183879722 183879752 -408910 + (A)n Simple_repeat Simple_repeat 1 30 0 391 298 193 6 chr4 183879945 183880106 -408556 - L2 LINE L2 -575 2739 2549 1062 279 95 53 chr4 183880231 183880779 -407883 - L2 LINE L2 -798 2516 1946 201 333 5 121 chr4 183880951 183881158 -407504 + L2 LINE L2 2488 2670 -644 249 316 53 33 chr4 183881165 183881317 -407345 - L2 LINE L2 -792 2522 2368 2432 76 0 3 chr4 183881359 183881660 -407002 - AluY SINE Alu -11 300 1 3486 214 26 25 chr4 183881687 183882281 -406381 + L1MB8 LINE L1 4373 4965 -1213 1768 153 3 55 chr4 183882281 183882426 -406236 + AluJb SINE Alu 1 152 -160 2144 109 0 24 chr4 183882426 183882720 -405942 + AluSg SINE Alu 3 289 -21 1768 153 3 55 chr4 183882720 183882900 -405762 + AluJb SINE Alu 152 309 -3 3486 214 26 25 chr4 183882900 183883432 -405230 + L1MB8 LINE L1 4965 5495 -683 439 227 10 0 chr4 183883442 183883539 -405123 + L1MB8 LINE L1 5607 5704 -462 583 229 54 42 chr4 183883541 183883781 -404881 + L1MB8 LINE L1 5936 6178 0 5276 206 58 62 chr4 183883797 183886117 -402545 + L1MC3 LINE L1 4837 7164 -621 2124 122 3 0 chr4 183886117 183886412 -402250 + AluSc SINE Alu 1 296 -13 5276 206 58 62 chr4 183886412 183887024 -401638 + L1MC3 LINE L1 7164 7582 -203 2150 112 7 0 chr4 183887024 183887318 -401344 + AluSx SINE Alu 1 296 -16 5276 206 58 62 chr4 183887318 183887501 -401161 + L1MC3 LINE L1 7582 7764 -21 2816 230 60 14 chr4 183890772 183891863 -396799 + L1ME2 LINE L1 5011 6149 -15 1098 119 15 5 chr4 183892711 183892912 -395750 + L1PA16 LINE L1 5288 5490 -676 * 30099 94 17 15 chr4 183892911 183895525 -393137 + L1PA7 LINE L1 748 3355 -3114 1880 127 4 0 chr4 183895525 183895785 -392877 + AluSq SINE Alu 1 261 -52 30099 94 17 15 chr4 183895785 183895812 -392850 + L1PA7 LINE L1 3355 3380 -3089 243 0 0 0 chr4 183895812 183895839 -392823 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 30099 94 17 15 chr4 183895839 183898879 -389783 + L1PA7 LINE L1 3380 6467 -2 3838 144 33 5 chr4 183898879 183899545 -389117 + L1PA16 LINE L1 5476 6166 0 2253 105 6 10 chr4 183900324 183900637 -388025 - AluSx SINE Alu 0 312 1 2609 17 0 0 chr4 183901027 183901318 -387344 + AluYa5 SINE Alu 21 311 0 1801 139 35 3 chr4 183901335 183901622 -387040 + AluSc SINE Alu 1 296 -13 1776 148 25 0 chr4 183902571 183902849 -385813 + MER1B DNA MER1_type 55 339 0 270 261 42 70 chr4 183903143 183903495 -385167 + L1MEd LINE L1 920 1223 -1284 368 333 34 0 chr4 183903502 183903619 -385043 - MLT1K LTR MaLR -286 302 182 292 231 126 56 chr4 183903932 183904075 -384587 + HAL1 LINE L1 2246 2398 -109 1998 135 42 15 chr4 183904162 183904496 -384166 - MER2 DNA MER2_type -1 343 1 1201 234 45 45 chr4 183904706 183905086 -383576 - MER58D DNA MER1_type -1 385 6 816 222 89 26 chr4 183905131 183905401 -383261 - MER5C DNA MER1_type -1 323 37 761 235 86 12 chr4 183907749 183907992 -380670 - MIR SINE MIR 0 262 2 215 287 222 36 chr4 183908085 183908252 -380410 + MIR SINE MIR 45 242 -20 225 0 0 0 chr4 183908913 183908938 -379724 + (TG)n Simple_repeat Simple_repeat 2 26 0 396 206 0 0 chr4 183908938 183909011 -379651 - L1MC/D LINE L1 -687 5672 5600 4012 168 69 12 chr4 183909024 183909875 -378787 - L1MC1 LINE L1 -5 6328 5429 2105 139 0 7 chr4 183910600 183910910 -377752 + AluSx SINE Alu 1 308 -4 264 291 0 13 chr4 183911901 183911980 -376682 - MIR3 SINE MIR -6 202 125 202 391 60 0 chr4 183914212 183914345 -374317 + MIR SINE MIR 117 257 -5 234 0 0 0 chr4 183914352 183914378 -374284 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 433 225 0 0 chr4 183914386 183914466 -374196 + AluJ/FLAM SINE Alu 1 80 -232 6313 83 24 7 chr4 183914605 183915981 -372681 + L1PA11 LINE L1 4789 6174 0 305 196 0 0 chr4 183916107 183916163 -372499 + L1MC4 LINE L1 6648 6703 -1339 197 284 211 11 chr4 183916847 183916942 -371720 - L2 LINE L2 -10 3303 3190 191 208 0 97 chr4 183917314 183917386 -371276 + MIR SINE MIR 140 204 -58 1979 246 65 12 chr4 183917488 183918074 -370588 + L1MB8 LINE L1 5560 6176 -2 270 56 0 0 chr4 183918363 183918399 -370263 + (CA)n Simple_repeat Simple_repeat 1 36 0 202 355 151 0 chr4 183920268 183920361 -368301 + MIR SINE MIR 18 124 -138 2137 192 8 8 chr4 183921330 183921726 -366936 - LOR1b LTR ERV1 0 461 66 1968 113 46 0 chr4 183921747 183922029 -366633 + AluSg SINE Alu 1 295 -15 647 101 0 0 chr4 183922096 183922185 -366477 - LOR1b-int LTR ERV1 -2 8118 8030 * 844 98 0 8 chr4 183922184 183922307 -366355 - LOR1-int LTR ERV1 -2056 6064 5943 735 145 8 0 chr4 183922307 183922424 -366238 - LOR1a LTR ERV1 0 497 380 * 1030 194 119 11 chr4 183922419 183922687 -365975 - LOR1b LTR ERV1 -164 297 1 939 117 14 7 chr4 183922687 183922832 -365830 - LOR1-int LTR ERV1 -2174 5946 5801 * 16907 103 33 38 chr4 183922822 183924145 -364517 - LOR1-int LTR ERV1 -2596 5524 4197 2274 98 0 0 chr4 183924145 183924441 -364221 - AluSg1 SINE Alu -13 296 1 16907 103 33 38 chr4 183924441 183925973 -362689 - LOR1-int LTR ERV1 -3923 4197 2682 301 218 128 0 chr4 183925974 183926052 -362610 - LOR1b LTR ERV1 -371 90 3 2160 110 7 0 chr4 183926079 183926378 -362284 - AluSx SINE Alu -11 301 1 21 0 0 0 chr4 183927668 183927689 -360973 + AT_rich Low_complexity Low_complexity 1 21 0 418 278 133 19 chr4 183929166 183929180 -359482 - L1MEd LINE L1 -4745 1582 1571 635 108 10 0 chr4 183929180 183929282 -359380 - L1MA3 LINE L1 0 6305 6203 418 278 133 19 chr4 183929282 183929537 -359125 - L1MEd LINE L1 -4756 1571 1282 280 289 40 0 chr4 183929712 183929788 -358874 - LTR33A LTR ERVL -348 175 97 198 264 236 0 chr4 183929870 183929942 -358720 + L2 LINE L2 3225 3313 0 367 327 27 41 chr4 183930312 183930514 -358148 + MIR SINE MIR 4 203 -59 1761 176 31 31 chr4 183930923 183931304 -357358 - L1MB8 LINE L1 0 6178 5798 2506 46 0 3 chr4 183933054 183933356 -355306 - AluY SINE Alu -10 301 1 2439 55 0 3 chr4 183935883 183936174 -352488 - AluY SINE Alu -21 290 1 32 26 0 0 chr4 183936866 183936905 -351757 + AT_rich Low_complexity Low_complexity 1 39 0 227 93 23 0 chr4 183937020 183937063 -351599 + (TTTTTA)n Simple_repeat Simple_repeat 4 47 0 25 0 0 0 chr4 183937967 183937992 -350670 + AT_rich Low_complexity Low_complexity 1 25 0 2153 95 7 3 chr4 183937993 183938322 -350340 + AluSx SINE Alu 1 330 0 544 300 126 38 chr4 183938868 183939452 -349210 - L1MEd LINE L1 -854 1244 98 2039 118 3 26 chr4 183939719 183940023 -348639 + AluSx SINE Alu 1 297 -15 283 194 21 0 chr4 183940389 183940482 -348180 + CT-rich Low_complexity Low_complexity 2 96 0 203 367 38 0 chr4 183941660 183941739 -346923 + MIR SINE MIR 2 83 -179 201 284 157 16 chr4 183942363 183942512 -346150 - MIR SINE MIR -54 208 40 225 256 32 112 chr4 183942655 183942780 -345882 - L2 LINE L2 -244 3028 2914 2357 94 0 13 chr4 183942785 183943092 -345570 - AluY SINE Alu -8 303 1 270 361 24 18 chr4 183943239 183943408 -345254 - MER5B DNA MER1_type 0 178 9 689 230 144 14 chr4 183943437 183943715 -344947 + MER5C DNA MER1_type 6 319 -5 1453 202 3 37 chr4 183944643 183944965 -343697 + AluJo SINE Alu 1 311 -1 6232 52 12 18 chr4 183945126 183945154 -343508 + L1PA7 LINE L1 5384 5411 -743 1790 150 4 11 chr4 183945154 183945427 -343235 + AluJo SINE Alu 12 282 -30 6232 52 12 18 chr4 183945427 183945685 -342977 + L1PA7 LINE L1 5411 5669 -485 2133 98 0 14 chr4 183945685 183946014 -342648 + AluY SINE Alu 1 325 0 6232 52 12 18 chr4 183946014 183946493 -342169 + L1PA7 LINE L1 5669 6146 -8 1953 66 25 0 chr4 183947532 183947797 -340865 - AluY SINE Alu 0 305 35 316 300 12 62 chr4 183949362 183949522 -339140 - MER58C DNA MER1_type -19 196 45 2981 260 29 38 chr4 183949851 183950919 -337743 + L1M4 LINE L1 3376 4434 -1712 3562 26 3 0 chr4 183951042 183951430 -337232 + SVA Other Other 996 1384 -2 225 0 0 0 chr4 183951441 183951466 -337196 + (A)n Simple_repeat Simple_repeat 1 25 0 1831 156 0 32 chr4 183951515 183951823 -336839 - AluJo SINE Alu -14 298 1 22 0 0 0 chr4 183952266 183952288 -336374 + AT_rich Low_complexity Low_complexity 1 22 0 384 326 38 11 chr4 183953139 183953323 -335339 + L2 LINE L2 2958 3146 -167 1840 204 173 53 chr4 183953425 183954042 -334620 + LTR8 LTR ERV1 1 691 0 238 315 46 23 chr4 183954700 183954830 -333832 + L2 LINE L2 2324 2456 -858 367 170 170 10 chr4 183954840 183954940 -333722 + MER4C LTR ERV1 1 116 -349 507 185 265 7 chr4 183955114 183955265 -333397 + MER4C LTR ERV1 276 465 0 486 317 57 18 chr4 183955284 183955511 -333151 + MIR SINE MIR 26 261 -1 392 316 86 29 chr4 183955579 183955788 -332874 + L2 LINE L2 2636 2856 -458 3436 127 80 0 chr4 183956295 183956808 -331854 - MER41C LTR ERV1 0 554 1 182 281 31 0 chr4 183956808 183956872 -331790 - L3 LINE CR1 -22 1555 1490 235 238 79 16 chr4 183958689 183958752 -329910 - MIR3 SINE MIR -37 171 105 297 0 0 0 chr4 183958833 183958866 -329796 + (TG)n Simple_repeat Simple_repeat 2 34 0 338 289 154 24 chr4 183958963 183959171 -329491 - MIR SINE MIR 0 262 28 244 175 0 0 chr4 183960035 183960075 -328587 - MER58 DNA MER1_type 0 2420 2381 27 0 0 0 chr4 183960533 183960560 -328102 + AT_rich Low_complexity Low_complexity 1 27 0 1160 123 6 6 chr4 183960775 183960938 -327724 + AluSq SINE Alu 1 163 -150 6089 150 3 7 chr4 183962076 183963445 -325217 - L1PB1 LINE L1 -2 6865 5502 5319 192 186 8 chr4 183963446 183964991 -323671 - L1PB1 LINE L1 -5038 1825 6 245 239 55 73 chr4 183965543 183965652 -323010 + L1ME LINE L1 5498 5604 -517 228 276 46 23 chr4 183966181 183966268 -322394 - L2 LINE L2 -1 3271 3183 350 312 106 25 chr4 183966335 183966572 -322090 + MIR SINE MIR 2 257 -5 2341 87 3 0 chr4 183966614 183966912 -321750 - AluSc SINE Alu -10 299 1 256 337 33 72 chr4 183967269 183967450 -321212 - L2 LINE L2 -153 3119 2946 274 376 65 40 chr4 183967890 183968195 -320467 - L2 LINE L2 -597 2717 2398 432 0 0 0 chr4 183968195 183968243 -320419 + (TG)n Simple_repeat Simple_repeat 2 49 0 274 376 65 40 chr4 183968243 183968339 -320323 - L2 LINE L2 -916 2398 2306 4417 45 2 0 chr4 183968375 183968890 -319772 - L1PA4 LINE L1 0 6155 5640 729 201 12 35 chr4 183969258 183969427 -319235 - MIR SINE MIR -39 223 59 2067 133 3 0 chr4 183969435 183969721 -318941 - AluSx SINE Alu -25 287 1 453 264 24 30 chr4 183969949 183970116 -318546 - HAL1 LINE L1 -359 2148 1983 1828 150 3 32 chr4 183970116 183970429 -318233 - AluJb SINE Alu -3 309 6 184 300 0 0 chr4 183970530 183970570 -318092 - L2 LINE L2 -19 3253 3214 250 333 33 11 chr4 183971320 183971410 -317252 + MIR SINE MIR 79 170 -92 197 262 0 16 chr4 183971907 183971968 -316694 + L3b LINE CR1 1132 1191 -392 2199 122 0 0 chr4 183972070 183972365 -316297 - AluSg SINE Alu -15 295 1 257 280 119 46 chr4 183972461 183972661 -316001 + MIR3 SINE MIR 2 212 -50 1214 213 11 72 chr4 183973835 183974182 -314480 + MLT1A2 LTR MaLR 34 359 -15 2315 75 7 0 chr4 183974246 183974540 -314122 - AluY SINE Alu -15 296 1 257 343 60 11 chr4 183974900 183975014 -313648 - MIR SINE MIR -78 130 25 2336 88 0 0 chr4 183975387 183975682 -312980 + AluSc SINE Alu 1 295 -14 365 0 22 0 chr4 183975733 183975778 -312884 + (CA)n Simple_repeat Simple_repeat 1 46 0 502 218 218 6 chr4 183975787 183975957 -312705 + MIR SINE MIR 56 261 -1 290 327 19 19 chr4 183976980 183977084 -311578 + MIR SINE MIR 1 104 -158 471 33 33 0 chr4 183977254 183977314 -311348 + MER101 LTR ERV1 410 471 -3 520 185 13 20 chr4 183977314 183977465 -311197 + CT-rich Low_complexity Low_complexity 3 152 0 591 209 22 0 chr4 183981179 183981318 -307344 - Charlie1 DNA MER1_type 0 2761 2620 * 760 248 61 0 chr4 183981299 183981497 -307165 - Charlie1 DNA MER1_type -2519 242 33 245 270 0 0 chr4 183981636 183981699 -306963 + MIR SINE MIR 92 154 -108 1253 29 0 0 chr4 183981707 183981847 -306815 + L1PA4 LINE L1 6010 6149 -6 225 0 0 0 chr4 183982370 183982395 -306267 + (TTA)n Simple_repeat Simple_repeat 3 27 0 4537 22 0 0 chr4 183982395 183982883 -305779 - L1PA3 LINE L1 -18 6137 5650 404 314 76 23 chr4 183983013 183983277 -305385 + HAL1 LINE L1 370 647 -1860 180 0 0 0 chr4 183983555 183983575 -305087 + (TAGG)n Simple_repeat Simple_repeat 1 20 0 728 104 16 33 chr4 183983575 183983758 -304904 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 661 281 50 20 chr4 183983783 183983982 -304680 + MIR SINE MIR 28 232 -30 289 0 0 0 chr4 183985306 183985338 -303324 + (TTTTG)n Simple_repeat Simple_repeat 3 105 0 2484 39 0 0 chr4 183985338 183985619 -303043 - AluY SINE Alu -1 312 1 2920 86 8 0 chr4 183987670 183988031 -300631 + THE1B LTR MaLR 1 364 0 10415 104 15 59 chr4 183988033 183988556 -300106 + THE1B-int LTR MaLR 2 547 -1033 2235 109 0 7 chr4 183988556 183988860 -299802 + AluSg SINE Alu 1 302 -8 10415 104 15 59 chr4 183988860 183989986 -298676 + THE1B-int LTR MaLR 547 1580 0 2688 124 0 6 chr4 183989988 183990352 -298310 + THE1B LTR MaLR 3 364 0 196 282 65 81 chr4 183990826 183990950 -297712 - L2 LINE L2 -10 3262 3141 199 262 0 0 chr4 183991053 183991095 -297567 - L3b LINE CR1 -14 1569 1528 433 331 74 54 chr4 183991125 183991367 -297295 - MIR SINE MIR -1 261 15 21 57 0 0 chr4 183991504 183991539 -297123 + AT_rich Low_complexity Low_complexity 1 35 0 335 316 88 0 chr4 183992546 183992682 -295980 + MIR SINE MIR 80 227 -35 208 364 64 27 chr4 183992782 183992892 -295770 + L2 LINE L2 2953 3066 -206 706 266 27 43 chr4 183993232 183993488 -295174 - MIR SINE MIR -10 252 1 2609 214 25 18 chr4 183993784 183994355 -294307 + MER90 LTR ERV1 1 575 0 213 196 43 0 chr4 183994434 183994480 -294182 + T-rich Low_complexity Low_complexity 5 52 0 198 216 0 0 chr4 183994485 183994522 -294140 - MIR SINE MIR -222 40 4 2161 112 7 0 chr4 184095489 184095783 -192879 - AluSx SINE Alu -16 296 1 505 66 0 0 chr4 184096654 184096735 -191927 + L1PA10 LINE L1 6087 6167 0 213 39 0 0 chr4 184096742 184096768 -191894 + (TA)n Simple_repeat Simple_repeat 1 26 0 230 344 39 7 chr4 184097453 184097607 -191055 - MER5B DNA MER1_type -6 172 14 322 246 0 0 chr4 184097714 184097775 -190887 + MER20 DNA MER1_type 1 61 -158 695 98 0 0 chr4 184097775 184097877 -190785 - AluY SINE Alu -17 294 193 695 226 33 0 chr4 184097977 184098189 -190473 - L1M4 LINE L1 -1610 4536 4319 28 29 0 0 chr4 184098318 184098353 -190309 + AT_rich Low_complexity Low_complexity 1 35 0 2454 88 0 3 chr4 184098384 184098690 -189972 - AluSc SINE Alu -4 305 1 258 105 0 0 chr4 184099314 184099352 -189310 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1089 179 6 0 chr4 184099355 184099534 -189128 - AluSq SINE Alu -48 265 86 2265 99 0 3 chr4 184099680 184099974 -188688 - AluSg SINE Alu -17 293 1 453 240 113 65 chr4 184100003 184100232 -188430 + MER110 LTR ERV1 252 491 0 704 226 164 15 chr4 184100375 184100570 -188092 - MER58A DNA MER1_type 0 224 1 250 313 12 0 chr4 184100656 184100736 -187926 + AluJ/FLAM SINE Alu 1 81 -221 24 0 0 0 chr4 184101687 184101711 -186951 + AT_rich Low_complexity Low_complexity 1 24 0 304 225 38 12 chr4 184102155 184102235 -186427 + Tigger3(Golem) DNA MER2_type 2849 2930 -99 240 200 0 33 chr4 184102235 184102295 -186367 + Tigger3(Golem) DNA MER2_type 2873 2930 -99 324 210 37 25 chr4 184102303 184102384 -186278 + Tigger3(Golem) DNA MER2_type 2849 2930 -99 296 159 0 32 chr4 184102381 184102444 -186218 + Tigger3(Golem) DNA MER2_type 2870 2930 -99 * 609 182 54 47 chr4 184102453 184102601 -186061 + Tigger3(Golem) DNA MER2_type 2850 2998 -31 698 179 33 7 chr4 184102649 184102800 -185862 + MER106A DNA MER1_type 38 192 -44 415 202 32 11 chr4 184102799 184102893 -185769 + LTR37B LTR ERV1 189 284 -184 * 2162 86 3 7 chr4 184102924 184103214 -185448 - AluSg SINE Alu -21 289 1 2279 73 3 0 chr4 184103220 184103508 -185154 - AluY SINE Alu 0 311 23 1021 178 17 0 chr4 184103668 184103848 -184814 + AluJb SINE Alu 122 304 -8 2103 138 0 6 chr4 184104111 184104423 -184239 + AluY SINE Alu 1 310 -1 1180 74 0 13 chr4 184105011 184105160 -183502 + AluSq/x SINE Alu 1 147 -166 191 281 70 53 chr4 184105373 184105544 -183118 - MIR SINE MIR -47 215 42 2458 80 0 0 chr4 184105904 184106203 -182459 + AluY SINE Alu 1 299 -12 1969 119 3 53 chr4 184106382 184106702 -181960 + AluSc SINE Alu 1 304 -5 2045 140 3 3 chr4 184107241 184107541 -181121 + AluSc SINE Alu 1 300 -9 422 183 0 0 chr4 184107575 184107646 -181016 + AluJ/FLAM SINE Alu 2 72 -240 556 210 19 44 chr4 184107747 184107911 -180751 - MLT2B3 LTR ERVL -294 150 1 2005 105 54 14 chr4 184108018 184108312 -180350 - AluSq SINE Alu -7 306 1 2217 104 7 7 chr4 184109180 184109477 -179185 - AluSq SINE Alu -16 297 1 1076 115 6 30 chr4 184110165 184110330 -178332 + AluSq SINE Alu 1 161 -152 5515 43 10 2 chr4 184110430 184111277 -177385 + SVA Other Other 265 1442 0 321 285 133 7 chr4 184111414 184111565 -177097 - MIR SINE MIR -56 206 37 486 0 0 0 chr4 184111756 184111810 -176852 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 2277 90 0 3 chr4 184112253 184112553 -176109 - AluSx SINE Alu -13 299 1 233 195 0 0 chr4 184112584 184112625 -176037 - L2 LINE L2 -4 3309 3269 250 191 63 16 chr4 184113012 184113075 -175587 - MER112 DNA MER1_type -107 153 88 2347 93 0 13 chr4 184113800 184114101 -174561 + AluSq SINE Alu 1 297 -16 22 0 0 0 chr4 184114286 184114308 -174354 + AT_rich Low_complexity Low_complexity 1 22 0 1411 167 8 20 chr4 184114510 184114761 -173901 + AluJo SINE Alu 1 248 -64 1594 144 0 4 chr4 184114874 184115103 -173559 - AluSg SINE Alu -82 228 1 512 256 39 83 chr4 184115287 184115574 -173088 - L2 LINE L2 -321 2992 2719 1834 154 10 3 chr4 184115586 184115885 -172777 + AluSx SINE Alu 1 301 -11 180 0 0 0 chr4 184115888 184115908 -172754 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2178 90 40 0 chr4 184116191 184116492 -172170 + AluSp SINE Alu 1 313 0 1701 140 50 78 chr4 184116900 184117258 -171404 + MER7A DNA MER2_type 1 346 0 4259 132 67 0 chr4 184117695 184118117 -170545 + LTR62 LTR ERVK 1 486 -233 2505 73 0 0 chr4 184118117 184118420 -170242 - AluY SINE Alu -8 303 1 4259 132 67 0 chr4 184118420 184118670 -169992 + LTR62 LTR ERVK 486 718 -1 1507 201 4 7 chr4 184118946 184119074 -169588 + AluJo SINE Alu 6 133 -179 2270 90 0 60 chr4 184119074 184119433 -169229 + AluSq SINE Alu 1 313 0 1507 201 4 7 chr4 184119433 184119582 -169080 + AluJo SINE Alu 133 282 -30 2174 92 7 3 chr4 184119767 184120059 -168603 + AluSq SINE Alu 1 293 -20 2363 160 124 53 chr4 184120230 184120929 -167733 + LTR1 LTR ERV1 12 760 -25 438 169 0 0 chr4 184121121 184121186 -167476 - AluS SINE Alu -243 66 2 2155 139 7 0 chr4 184121361 184121671 -166991 + AluSx SINE Alu 1 312 0 22 0 0 0 chr4 184121727 184121749 -166913 + AT_rich Low_complexity Low_complexity 1 22 0 818 174 0 7 chr4 184121979 184122123 -166539 + FLAM_C SINE Alu 1 143 0 2156 128 0 0 chr4 184122133 184122429 -166233 + AluSx SINE Alu 1 296 -16 200 219 0 0 chr4 184122614 184122655 -166007 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 369 291 19 38 chr4 184122779 184122937 -165725 + L1MC/D LINE L1 5583 5737 -2071 435 19 0 0 chr4 184123004 184123056 -165606 + (CA)n Simple_repeat Simple_repeat 1 52 0 1947 135 14 0 chr4 184123084 184123373 -165289 + AluSx SINE Alu 1 293 -19 2175 121 10 0 chr4 184123889 184124194 -164468 - AluSq SINE Alu -5 308 1 343 315 150 3 chr4 184124585 184124953 -163709 - L2 LINE L2 -90 3223 2444 2440 68 7 0 chr4 184125839 184126134 -162528 - AluY SINE Alu -14 297 1 1096 90 0 0 chr4 184126134 184126267 -162395 - AluSg SINE Alu -177 133 1 27 73 0 0 chr4 184126280 184126335 -162327 + AT_rich Low_complexity Low_complexity 1 55 0 2080 25 13 0 chr4 184127021 184127257 -161405 + AluY SINE Alu 50 288 -23 576 84 0 0 chr4 184127675 184127758 -160904 + (CA)n Simple_repeat Simple_repeat 2 84 0 233 93 23 0 chr4 184128148 184128177 -160485 + (TCTCCC)n Simple_repeat Simple_repeat 6 38 -11 1906 123 0 4 chr4 184128177 184128437 -160225 - AluSx SINE Alu -15 297 39 233 93 23 0 chr4 184128437 184128450 -160212 + (TCTCCC)n Simple_repeat Simple_repeat 38 49 0 1624 156 10 27 chr4 184129690 184129985 -158677 + AluJo SINE Alu 9 298 -14 2104 85 4 4 chr4 184130246 184130517 -158145 - AluSx SINE Alu -16 296 26 2323 105 0 3 chr4 184131097 184131402 -157260 - AluSc SINE Alu -5 304 1 1634 218 79 0 chr4 184131607 184132024 -156638 - L1MC3 LINE L1 -1 7784 7335 2141 77 49 3 chr4 184132038 184132323 -156339 - AluSg SINE Alu -12 298 1 3985 45 18 2 chr4 184132438 184132944 -155718 - L1P LINE L1 -1424 4722 4209 597 259 63 26 chr4 184132952 184133141 -155521 - MLT1D LTR MaLR -309 196 1 289 317 0 10 chr4 184133145 184133246 -155416 + MIR SINE MIR 163 262 0 398 200 27 0 chr4 184133262 184133337 -155325 + AluJb SINE Alu 118 194 -108 421 294 101 65 chr4 184133374 184133711 -154951 + L1ME LINE L1 4724 5072 -1074 303 317 124 18 chr4 184133971 184134241 -154421 + L1ME LINE L1 5405 5708 -413 2126 115 14 0 chr4 184134324 184134612 -154050 + AluSx SINE Alu 1 292 -20 203 0 0 36 chr4 184134672 184134700 -153962 + (TG)n Simple_repeat Simple_repeat 2 28 0 288 0 0 0 chr4 184134831 184134863 -153799 + (TG)n Simple_repeat Simple_repeat 1 32 0 24 32 0 0 chr4 184135003 184135034 -153628 + AT_rich Low_complexity Low_complexity 1 31 0 1654 133 0 61 chr4 184135486 184135780 -152882 - AluSx SINE Alu -36 276 1 375 248 159 13 chr4 184136350 184136507 -152155 - MER96B DNA MER1_type? -236 181 2 1728 58 31 4 chr4 184137621 184137847 -150815 - AluSc SINE Alu -77 232 1 192 248 163 50 chr4 184137849 184137990 -150672 + L2 LINE L2 3106 3262 -51 571 213 0 0 chr4 184138052 184138160 -150502 + Tigger3(Golem) DNA MER2_type 1 108 -2921 * 3593 154 66 30 chr4 184138151 184138377 -150285 + Tigger3(Golem) DNA MER2_type 2278 2494 -535 2181 116 3 0 chr4 184138377 184138680 -149982 + AluSp SINE Alu 3 306 -7 3593 154 66 30 chr4 184138680 184139178 -149484 + Tigger3(Golem) DNA MER2_type 2494 3028 -1 690 158 0 0 chr4 184139416 184139517 -149145 - AluSg/x SINE Alu -45 267 167 902 130 7 0 chr4 184139614 184139752 -148910 - AluJb SINE Alu -173 139 1 276 297 77 107 chr4 184139925 184140326 -148336 - L2 LINE L2 -42 3230 2842 1070 188 20 10 chr4 184140344 184140546 -148116 - MER46A DNA MER2_type 0 236 33 1556 145 0 4 chr4 184140651 184140879 -147783 - AluJb SINE Alu -80 232 6 397 292 115 0 chr4 184141022 184141135 -147527 - MER5A DNA MER1_type -24 165 40 2039 105 61 3 chr4 184141691 184141986 -146676 - AluSx SINE Alu 0 312 1 38 0 0 0 chr4 184142407 184142445 -146217 + AT_rich Low_complexity Low_complexity 1 38 0 748 111 4 2 chr4 184142983 184143236 -145426 + AluSx SINE Alu 1 303 -7 2229 66 42 0 chr4 184143615 184143904 -144758 + AluSp SINE Alu 1 301 -12 1972 85 0 4 chr4 184143925 184144171 -144491 + AluSc SINE Alu 1 245 -64 2158 128 3 3 chr4 184144503 184144816 -143846 + AluSq SINE Alu 1 313 0 2223 113 0 7 chr4 184144853 184145154 -143508 + AluSx SINE Alu 1 299 -13 2222 111 61 25 chr4 184146001 184146363 -142299 + THE1C LTR MaLR 1 375 0 2031 123 19 13 chr4 184147108 184147418 -141244 + AluSx SINE Alu 1 312 0 304 281 88 52 chr4 184147652 184147844 -140818 + L2 LINE L2 2174 2372 -942 1052 263 178 51 chr4 184148301 184149283 -139379 + L2 LINE L2 2179 3301 -12 1517 102 0 5 chr4 184149412 184149654 -139008 - AluSq SINE Alu 0 328 88 1018 85 7 7 chr4 184149654 184149795 -138867 - AluSq/x SINE Alu -172 141 1 190 300 62 12 chr4 184150409 184150489 -138173 + L2 LINE L2 3230 3313 0 498 290 59 9 chr4 184151549 184151890 -136772 + L1MC/D LINE L1 4799 5156 -990 2370 72 7 0 chr4 184151892 184152183 -136479 + AluSp SINE Alu 1 293 -20 36 53 0 0 chr4 184152183 184152240 -136422 + AT_rich Low_complexity Low_complexity 1 57 0 602 246 89 0 chr4 184152342 184152533 -136129 + L1MC/D LINE L1 5313 5520 -2288 222 261 108 0 chr4 184153057 184153122 -135540 + MIR SINE MIR 175 246 -16 979 69 0 0 chr4 184153220 184153351 -135311 - AluY SINE Alu -4 307 177 297 354 83 0 chr4 184153671 184153815 -134847 + L2 LINE L2 3116 3271 -1 1409 151 15 27 chr4 184154444 184154703 -133959 + AluJo SINE Alu 1 256 -56 674 270 11 0 chr4 184154971 184155149 -133513 - MER3 DNA MER1_type 0 209 30 2344 98 0 13 chr4 184155611 184155927 -132735 - AluSq SINE Alu -1 312 1 5672 29 0 3 chr4 184156005 184156628 -132034 - SVA Other Other 0 1386 766 538 250 25 49 chr4 184156630 184156834 -131828 - L1ME3 LINE L1 -6 6156 5958 1170 145 37 65 chr4 184156843 184157057 -131605 - AluJb SINE Alu -104 208 1 1013 261 62 6 chr4 184157057 184157382 -131280 - L1ME3 LINE L1 -191 5971 5629 1920 134 0 10 chr4 184157660 184157945 -130717 + AluSg SINE Alu 1 283 -22 944 109 23 0 chr4 184157945 184158120 -130542 + (TA)n Simple_repeat Simple_repeat 1 179 0 1829 157 27 3 chr4 184158451 184158745 -129917 + AluJo SINE Alu 1 301 -11 5420 43 3 5 chr4 184158745 184159366 -129296 + L1PA5 LINE L1 5535 6154 0 240 35 0 0 chr4 184159373 184159402 -129260 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 261 279 61 18 chr4 184159570 184159735 -128927 + L1ME LINE L1 5198 5369 -777 410 264 171 27 chr4 184159786 184160044 -128618 + L1ME LINE L1 5494 5788 -333 778 161 45 32 chr4 184160741 184160896 -127766 + FRAM SINE Alu 1 157 -9 4232 163 36 9 chr4 184160916 184161675 -126987 - L1MB8 LINE L1 0 6178 5400 1690 161 39 7 chr4 184161761 184162047 -126615 + AluJo SINE Alu 7 301 -11 1748 99 8 8 chr4 184163515 184163757 -124905 - AluSq SINE Alu -58 255 14 714 307 33 20 chr4 184163806 184164112 -124550 + L2 LINE L2 2214 2523 -791 2685 36 0 0 chr4 184164185 184164490 -124172 - AluY SINE Alu -6 305 1 2300 103 0 0 chr4 184164623 184164925 -123737 - AluSc SINE Alu -7 302 1 217 132 0 0 chr4 184164982 184165020 -123642 + (TA)n Simple_repeat Simple_repeat 2 39 0 2504 51 3 0 chr4 184165606 184165898 -122764 - AluY SINE Alu -18 293 1 429 333 37 23 chr4 184165908 184166124 -122538 + MIR SINE MIR 31 249 -13 282 248 92 57 chr4 184166149 184166290 -122372 + L1MC/D LINE L1 5717 5862 -1946 2263 89 3 19 chr4 184166739 184167054 -121608 - AluSg SINE Alu 0 310 1 230 293 113 0 chr4 184167567 184167673 -120989 + L1MC/D LINE L1 5777 5894 -1914 1273 169 0 76 chr4 184167882 184168131 -120531 - AluJb SINE Alu -81 231 2 302 258 61 15 chr4 184168160 184168292 -120370 - L1MC5 LINE L1 -176 7785 7648 2296 94 3 0 chr4 184168609 184168907 -119755 - AluSx SINE Alu -13 299 1 2169 117 0 10 chr4 184169100 184169407 -119255 - AluSq SINE Alu -9 304 1 657 26 0 0 chr4 184169644 184169721 -118941 + AluY SINE Alu 223 299 -12 514 206 69 0 chr4 184169721 184169823 -118839 + MER93b LTR ERV1 12 120 -253 627 201 42 21 chr4 184169829 184169973 -118689 + MER93b LTR ERV1 225 371 -2 2150 107 10 0 chr4 184170345 184170636 -118026 + AluSx SINE Alu 2 295 -17 2064 134 3 3 chr4 184170640 184170767 -117895 + AluSx SINE Alu 2 128 -184 186 43 0 0 chr4 184170767 184170790 -117872 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2064 134 3 3 chr4 184170790 184170967 -117695 + AluSx SINE Alu 127 306 -6 1972 123 13 10 chr4 184171291 184171652 -117010 + AluSp SINE Alu 2 363 0 545 256 83 12 chr4 184171729 184171897 -116765 - MIR SINE MIR -40 222 43 189 268 134 37 chr4 184172618 184172700 -115962 - MER5A DNA MER1_type -22 167 78 342 273 104 0 chr4 184172820 184172974 -115688 + L1MC3 LINE L1 7115 7284 -501 238 232 116 0 chr4 184173022 184173091 -115571 + L2 LINE L2 2481 2557 -757 465 247 34 27 chr4 184173091 184173237 -115425 - MER58A DNA MER1_type 0 147 1 2215 94 29 16 chr4 184173266 184173574 -115088 - AluSx SINE Alu 0 312 1 205 245 20 0 chr4 184173656 184173705 -114957 + L2 LINE L2 2572 2621 -693 3327 218 39 33 chr4 184173716 184174707 -113955 - L1ME1 LINE L1 -83 6083 5076 1360 168 17 44 chr4 184174698 184174899 -113763 + L1MC/D LINE L1 4544 4736 -1410 * 2126 101 14 3 chr4 184174899 184175187 -113475 + AluSg SINE Alu 1 291 -19 1360 168 17 44 chr4 184175187 184175282 -113380 + L1MC/D LINE L1 4736 4832 -1314 618 246 0 0 chr4 184175302 184175656 -113006 + (CA)n Simple_repeat Simple_repeat 1 354 0 469 276 210 51 chr4 184175902 184176293 -112369 - L2 LINE L2 -917 2397 1945 535 292 149 25 chr4 184176514 184176829 -111833 + L1MC/D LINE L1 5296 5649 -2159 544 107 160 33 chr4 184176839 184176989 -111673 - Charlie1 DNA MER1_type -4 2757 2589 2048 97 28 3 chr4 184176990 184177278 -111384 + AluSx SINE Alu 1 295 -17 377 154 70 98 chr4 184177863 184177951 -110711 - Charlie1 DNA MER1_type -222 2539 2455 2499 30 0 7 chr4 184177951 184178247 -110415 + AluY SINE Alu 1 294 -17 377 154 70 98 chr4 184178247 184178301 -110361 - Charlie1 DNA MER1_type -306 2455 2401 871 110 0 16 chr4 184178307 184178434 -110228 + AluJb SINE Alu 158 282 -30 296 171 29 14 chr4 184178436 184178506 -110156 - Charlie1 DNA MER1_type -409 2352 2282 338 304 74 59 chr4 184179597 184179639 -109023 + L1MC/D LINE L1 5254 5294 -2514 2406 86 3 0 chr4 184179639 184179942 -108720 + AluSx SINE Alu 1 304 -8 338 304 74 59 chr4 184179942 184180238 -108424 + L1MC/D LINE L1 5294 5597 -2211 493 277 138 13 chr4 184180456 184180687 -107975 - L2 LINE L2 -3 3310 3051 2860 10 0 6 chr4 184183016 184183330 -105332 + AluYb8 SINE Alu 1 312 -6 742 190 0 0 chr4 184184479 184184621 -104041 - L1MB7 LINE L1 -19 6165 6024 2064 114 24 0 chr4 184184621 184184911 -103751 + AluSx SINE Alu 1 297 -15 452 154 0 49 chr4 184184911 184185034 -103628 + GA-rich Low_complexity Low_complexity 1 117 0 547 178 28 0 chr4 184185034 184185141 -103521 - L1MB7 LINE L1 -144 6040 5931 2329 121 0 0 chr4 184185389 184185696 -102966 - AluSx SINE Alu -5 307 1 270 356 131 31 chr4 184186113 184186795 -101867 - L2 LINE L2 -668 2646 1897 632 295 183 8 chr4 184186812 184187168 -101494 - L2 LINE L2 -1000 2314 1897 799 247 151 17 chr4 184187179 184187430 -101232 + L1MC4 LINE L1 7419 7823 -219 2266 108 3 0 chr4 184187529 184187834 -100828 - AluSx SINE Alu -6 306 1 337 158 0 0 chr4 184187835 184187892 -100770 - AluJ/FLAM SINE Alu -245 57 1 * 351 153 0 0 chr4 184187892 184187950 -100712 - AluJ/FLAM SINE Alu -244 58 1 601 146 158 70 chr4 184188435 184188504 -100158 + MER53 DNA DNA 1 63 -126 1724 99 4 4 chr4 184188504 184188737 -99925 - AluSg SINE Alu -14 296 64 601 146 158 70 chr4 184188737 184188838 -99824 + MER53 DNA DNA 63 186 -3 477 235 106 29 chr4 184189076 184189246 -99416 - L2 LINE L2 -2811 503 321 5004 56 3 3 chr4 184189371 184189962 -98700 - LTR10C LTR ERV1 0 591 1 1885 71 0 0 chr4 184191143 184191368 -97294 + L1PA6 LINE L1 5919 6143 -11 29 0 0 0 chr4 184191368 184191397 -97265 + AT_rich Low_complexity Low_complexity 1 29 0 228 217 57 57 chr4 184191408 184191514 -97148 + L1MEd LINE L1 66 171 -5948 405 297 79 20 chr4 184191520 184191722 -96940 - MER110 LTR ERV1 -113 378 165 21 0 0 0 chr4 184191918 184191939 -96723 + AT_rich Low_complexity Low_complexity 1 21 0 470 185 222 9 chr4 184191942 184192050 -96612 + FLAM_C SINE Alu 3 133 0 282 228 49 138 chr4 184192076 184192170 -96492 + L1M4 LINE L1 2932 3033 -3113 1803 142 0 46 chr4 184192170 184192473 -96189 + AluJo SINE Alu 1 289 -23 1863 159 0 0 chr4 184192480 184192769 -95893 + AluJb SINE Alu 1 289 -23 282 228 49 138 chr4 184192769 184192991 -95671 + L1M4 LINE L1 3039 3227 -2919 4862 175 25 16 chr4 184193158 184193199 -95463 - L1MB3 LINE L1 -1 6182 6143 2339 76 3 36 chr4 184193199 184193503 -95159 + AluSp SINE Alu 1 294 -19 4862 175 25 16 chr4 184193503 184194411 -94251 - L1MB3 LINE L1 -40 6143 5228 303 239 91 114 chr4 184194412 184194520 -94142 + L1M4 LINE L1 3524 3633 -2513 1178 237 7 101 chr4 184194520 184194958 -93704 - MLT2C1 LTR ERVL 0 397 1 303 239 91 114 chr4 184194958 184195078 -93584 + L1M4 LINE L1 3633 3748 -2398 2317 93 0 6 chr4 184195078 184195390 -93272 + AluSx SINE Alu 1 310 -2 303 239 91 114 chr4 184195390 184195424 -93238 + L1M4 LINE L1 3748 3781 -2365 2247 103 0 20 chr4 184196006 184196308 -92354 + AluSg SINE Alu 1 296 -14 2103 104 14 3 chr4 184197209 184197498 -91164 - AluSc SINE Alu -17 292 1 418 284 153 16 chr4 184197498 184197681 -90981 - MER46C DNA MER2_type -52 286 79 380 241 108 79 chr4 184197687 184197842 -90820 + MIR SINE MIR 46 210 -52 1765 168 14 0 chr4 184197842 184198139 -90523 + AluJb SINE Alu 1 301 -11 380 241 108 79 chr4 184198139 184198186 -90476 + MIR SINE MIR 210 254 -8 1947 118 52 7 chr4 184198846 184199133 -89529 - AluSc SINE Alu -5 304 5 186 43 0 0 chr4 184199144 184199167 -89495 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 343 309 94 78 chr4 184199177 184199497 -89165 + L2 LINE L2 2947 3271 -1 181 322 26 70 chr4 184199519 184199634 -89028 + MIR SINE MIR 143 252 -10 3371 168 42 48 chr4 184199883 184200048 -88614 + MER39 LTR ERV1 1 165 -542 2116 143 0 0 chr4 184200048 184200356 -88306 + AluSx SINE Alu 1 308 -4 3371 168 42 48 chr4 184200356 184200897 -87765 + MER39 LTR ERV1 165 703 -4 314 214 86 0 chr4 184201151 184201221 -87441 + L1MC4 LINE L1 7211 7286 -756 628 108 0 0 chr4 184201379 184201462 -87200 + L1P LINE L1 604 686 -5460 12613 47 5 0 chr4 184201463 184203718 -84944 + L1PA5 LINE L1 3875 6153 -1 315 296 28 78 chr4 184203786 184203965 -84697 + L2 LINE L2 2599 2768 -546 250 341 96 30 chr4 184204190 184204357 -84305 - MIR SINE MIR -68 194 17 386 283 0 91 chr4 184205355 184205489 -83173 - MER5B DNA MER1_type -2 176 62 2421 94 0 0 chr4 184205489 184205796 -82866 - AluSx SINE Alu -5 307 1 386 283 0 91 chr4 184205796 184205848 -82814 - MER5B DNA MER1_type -116 62 7 1756 156 3 33 chr4 184206153 184206455 -82207 + AluJo SINE Alu 1 293 -19 2271 99 16 3 chr4 184206743 184207046 -81616 + AluSq SINE Alu 1 307 -6 1753 93 0 13 chr4 184208420 184208692 -79970 + AluSg1 SINE Alu 48 316 0 290 306 215 43 chr4 184209006 184209378 -79284 + L2 LINE L2 2045 2480 -834 297 355 36 14 chr4 184209442 184209580 -79082 + L1MEd LINE L1 496 636 -5483 1966 112 45 0 chr4 184209586 184209873 -78789 + AluSx SINE Alu 1 300 -12 4450 216 81 55 chr4 184209877 184210017 -78645 + L1MD3 LINE L1 3879 4014 -2132 1972 134 40 0 chr4 184210017 184210315 -78347 + AluSg SINE Alu 1 310 0 4450 216 81 55 chr4 184210315 184212102 -76560 + L1MD3 LINE L1 4014 5403 -743 1443 118 0 78 chr4 184212203 184212448 -76214 + AluSq SINE Alu 76 301 -12 1294 191 4 12 chr4 184212673 184212929 -75733 - L1MD3 LINE L1 -12 7983 7730 190 227 239 34 chr4 184213886 184213974 -74688 + L2 LINE L2 2929 3034 -279 1171 173 85 44 chr4 184215333 184215508 -73154 + MER58B DNA MER1_type 59 250 -2170 1983 113 13 23 chr4 184215508 184215808 -72854 - AluSg SINE Alu -13 297 1 1171 173 85 44 chr4 184215808 184215904 -72758 + MER58B DNA MER1_type 250 341 0 578 325 183 29 chr4 184215975 184216503 -72159 + L2 LINE L2 113 558 -2756 2203 105 20 3 chr4 184216503 184216808 -71854 - AluSx SINE Alu 0 312 3 578 325 183 29 chr4 184216808 184217103 -71559 + L2 LINE L2 558 1063 -2251 246 215 51 51 chr4 184217104 184217183 -71479 - MER46C DNA MER2_type -3 335 257 558 201 54 54 chr4 184217211 184217360 -71302 - MER46C DNA MER2_type -189 149 1 450 288 129 0 chr4 184217361 184217531 -71131 + L2 LINE L2 1062 1253 -2061 581 210 45 45 chr4 184217650 184217792 -70870 + MER20B DNA MER1_type 608 752 -31 2524 71 3 0 chr4 184217792 184218103 -70559 + AluSp SINE Alu 1 312 -1 581 210 45 45 chr4 184218103 184218136 -70526 + MER20B DNA MER1_type 751 783 0 416 275 92 112 chr4 184218177 184219096 -69566 + L2 LINE L2 1353 2253 -1061 705 340 47 17 chr4 184219668 184220012 -68650 + L2 LINE L2 2960 3313 0 832 114 0 8 chr4 184220216 184220339 -68323 - LOR1b LTR ERV1 -339 122 1 1090 141 18 0 chr4 184220418 184220581 -68081 - AluSx SINE Alu -146 166 1 1796 207 12 11 chr4 184221643 184221977 -66685 - MLT1B LTR MaLR -17 373 54 880 160 0 0 chr4 184221977 184222108 -66554 - FLAM_C SINE Alu -1 132 2 1796 207 12 11 chr4 184222108 184222163 -66499 - MLT1B LTR MaLR -336 54 1 397 228 40 10 chr4 184222686 184222787 -65875 + LTR25 LTR ERV1 260 363 -431 345 230 0 80 chr4 184222784 184222884 -65778 + MER61E LTR ERV1 99 190 -379 * 975 174 27 16 chr4 184222963 184223147 -65515 + MER61E LTR ERV1 341 526 -43 1145 138 6 0 chr4 184223248 184223415 -65247 - AluJb SINE Alu -15 297 130 1912 104 31 7 chr4 184223425 184223714 -64948 - L1PA13 LINE L1 -4 6159 5864 1630 181 92 43 chr4 184223914 184224307 -64355 - MLT1C LTR MaLR -55 412 1 2287 100 0 3 chr4 184224868 184225167 -63495 + AluSx SINE Alu 1 298 -14 539 282 28 61 chr4 184225283 184225540 -63122 + L2 LINE L2 2741 2991 -322 1273 65 0 0 chr4 184225853 184226007 -62655 - AluSg/x SINE Alu -11 301 148 14951 178 61 9 chr4 184226040 184228995 -59667 + L1PB1 LINE L1 7 2805 -4062 2110 128 17 0 chr4 184228995 184229292 -59370 + AluSx SINE Alu 1 302 -10 14951 178 61 9 chr4 184229292 184230213 -58449 + L1PB1 LINE L1 2805 3676 -3191 2143 125 0 0 chr4 184230213 184230508 -58154 + AluY SINE Alu 1 295 -16 14951 178 61 9 chr4 184230508 184232898 -55764 + L1PB1 LINE L1 3676 6603 -264 207 231 115 0 chr4 184235286 184235338 -53324 + L2 LINE L2 3251 3308 -5 2472 50 3 0 chr4 184235932 184236230 -52432 - AluSp SINE Alu -14 299 1 199 146 36 18 chr4 184236353 184236408 -52254 + GA-rich Low_complexity Low_complexity 1 56 0 511 316 41 54 chr4 184236688 184236923 -51739 + L2 LINE L2 2827 3058 -255 1802 214 15 3 chr4 184236923 184237260 -51402 + MER58B DNA MER1_type 1 341 0 511 316 41 54 chr4 184237260 184237340 -51322 + L2 LINE L2 3058 3138 -175 1588 251 65 53 chr4 184237419 184237727 -50935 - L1ME3A LINE L1 -105 6065 5745 2098 129 0 7 chr4 184237727 184238029 -50633 - AluSg SINE Alu -10 300 1 1588 251 65 53 chr4 184238029 184238318 -50344 - L1ME3A LINE L1 -425 5745 5461 200 295 0 33 chr4 184238321 184238382 -50280 + L2 LINE L2 3180 3238 -75 813 133 28 99 chr4 184238617 184238798 -49864 - MER20B DNA MER1_type 0 219 52 472 81 0 0 chr4 184238799 184238861 -49801 + Alu SINE Alu 2 63 -247 745 152 86 33 chr4 184239542 184239693 -48969 + MER58B DNA MER1_type 181 339 -2 188 281 35 0 chr4 184239694 184239751 -48911 + L2 LINE L2 3254 3312 -1 2330 102 0 0 chr4 184239877 184240181 -48481 + AluSg SINE Alu 1 304 -6 455 277 120 51 chr4 184240185 184240459 -48203 + L2 LINE L2 2987 3279 -34 1668 149 0 123 chr4 184242147 184242299 -46363 + AluJo SINE Alu 2 90 -212 2215 110 3 0 chr4 184242299 184242600 -46062 - AluSx SINE Alu -10 302 1 1668 149 0 123 chr4 184242600 184242789 -45873 + AluJo SINE Alu 90 301 -1 1003 182 95 118 chr4 184243225 184243572 -45090 - MLT1B LTR MaLR 0 390 52 2124 112 0 3 chr4 184245338 184245633 -43029 + AluSx SINE Alu 1 294 -18 1248 215 98 65 chr4 184245636 184245691 -42971 - L1MA9 LINE L1 -63 6249 6197 2593 58 0 0 chr4 184245691 184246001 -42661 + AluY SINE Alu 1 310 -1 1248 215 98 65 chr4 184246001 184246456 -42206 - L1MA9 LINE L1 -115 6197 5722 736 247 93 118 chr4 184246597 184246884 -41778 + MLT1H LTR MaLR 36 306 -243 2085 114 23 7 chr4 184246884 184247191 -41471 + AluSx SINE Alu 1 312 0 736 247 93 118 chr4 184247191 184247429 -41233 + MLT1H LTR MaLR 306 548 -1 1836 145 3 17 chr4 184247546 184247682 -40980 + AluSx SINE Alu 1 137 -175 2237 104 0 0 chr4 184247682 184247981 -40681 + AluSg SINE Alu 1 299 -11 1836 145 3 17 chr4 184247981 184248134 -40528 + AluSx SINE Alu 137 286 -26 2146 98 10 7 chr4 184249456 184249751 -38911 + AluSp SINE Alu 5 300 -13 2083 117 3 3 chr4 184250145 184250444 -38218 + AluSx SINE Alu 1 299 -13 2072 126 7 0 chr4 184251527 184251821 -36841 - AluSx SINE Alu -16 296 1 32 0 0 0 chr4 184251939 184251971 -36691 + AT_rich Low_complexity Low_complexity 1 32 0 247 268 16 65 chr4 184251992 184252115 -36547 + L1M4 LINE L1 2927 3043 -3103 311 247 62 0 chr4 184252155 184252236 -36426 - L1MC5 LINE L1 -868 7093 7008 21 36 0 0 chr4 184253013 184253041 -35621 + AT_rich Low_complexity Low_complexity 1 28 0 309 26 0 0 chr4 184253059 184253097 -35565 + (TG)n Simple_repeat Simple_repeat 1 38 0 341 215 49 76 chr4 184253318 184253379 -35283 - L1MC4 LINE L1 0 8042 7981 1692 185 88 14 chr4 184253379 184253742 -34920 + MLT1B LTR MaLR 1 390 0 341 215 49 76 chr4 184253742 184253824 -34838 - L1MC4 LINE L1 -61 7981 7903 236 231 77 19 chr4 184253825 184253929 -34733 + (CATATA)n Simple_repeat Simple_repeat 4 113 0 407 262 37 42 chr4 184253962 184254153 -34509 - L1MC4 LINE L1 -150 7892 7703 1817 168 0 10 chr4 184254237 184254535 -34127 - AluJo SINE Alu -17 295 1 523 62 0 62 chr4 184254552 184254582 -34080 + MADE1 DNA Mariner 6 36 -44 2109 121 3 0 chr4 184254582 184254879 -33783 - AluSc SINE Alu -11 298 1 523 62 0 62 chr4 184254879 184254928 -33734 + MADE1 DNA Mariner 36 80 0 320 281 58 0 chr4 184254928 184255049 -33613 - L1MC4 LINE L1 -1017 7025 6898 263 287 86 48 chr4 184255120 184255329 -33333 - L1MC5 LINE L1 -477 7484 7268 269 315 130 25 chr4 184255699 184255975 -32687 + L1MC4a LINE L1 5604 5908 -1900 899 111 0 8 chr4 184256304 184256430 -32232 + AluSq/x SINE Alu 1 125 -187 2630 40 0 0 chr4 184257454 184257758 -30904 + AluY SINE Alu 1 304 -7 725 259 167 61 chr4 184257758 184258268 -30394 + MLT1G LTR MaLR 20 583 -7 285 313 0 0 chr4 184258314 184258410 -30252 + (TA)n Simple_repeat Simple_repeat 1 96 0 1618 158 59 4 chr4 184258674 184258946 -29716 + AluJo SINE Alu 1 287 -25 366 317 93 69 chr4 184259564 184259854 -28808 - L2 LINE L2 -510 2804 2508 3655 198 71 22 chr4 184259910 184260767 -27895 + L1MB7 LINE L1 5286 6184 0 522 273 93 0 chr4 184260870 184261031 -27631 + MIR SINE MIR 17 192 -70 1588 174 14 11 chr4 184261231 184261518 -27144 + AluJo SINE Alu 1 288 -24 2467 72 7 0 chr4 184261524 184261828 -26834 + AluSg SINE Alu 5 310 0 182 36 0 36 chr4 184261828 184261856 -26806 + (GGAA)n Simple_repeat Simple_repeat 3 29 0 290 323 8 77 chr4 184263175 184263305 -25357 + L2 LINE L2 3149 3269 -3 356 254 40 6 chr4 184263531 184263602 -25060 - L1ME LINE L1 -404 5766 5699 1470 220 6 13 chr4 184263602 184263915 -24747 - AluJo SINE Alu -1 311 1 356 254 40 6 chr4 184263915 184263999 -24663 - L1ME LINE L1 -471 5699 5566 948 187 14 41 chr4 184264051 184264270 -24392 + Charlie1a DNA MER1_type 93 305 -1150 2084 225 35 65 chr4 184264284 184264915 -23747 + Charlie1a DNA MER1_type 267 878 -577 2218 107 0 3 chr4 184264919 184265210 -23452 + AluSc SINE Alu 1 290 -19 840 155 167 0 chr4 184265216 184265384 -23278 + Charlie1a DNA MER1_type 968 1163 -292 24 67 0 0 chr4 184265519 184265564 -23098 + AT_rich Low_complexity Low_complexity 1 45 0 856 150 94 6 chr4 184265808 184265968 -22694 - AluSc SINE Alu -8 301 128 2000 111 45 0 chr4 184266209 184266497 -22165 + AluSp SINE Alu 1 301 -12 1267 172 30 4 chr4 184266497 184266759 -21903 - L1MC4 LINE L1 -441 7601 7333 27 49 0 0 chr4 184267343 184267384 -21278 + AT_rich Low_complexity Low_complexity 1 41 0 1136 233 30 30 chr4 184267782 184268113 -20549 + L1MEc LINE L1 1969 2299 -4097 1114 236 72 4 chr4 184268112 184268388 -20274 + L1MCa LINE L1 20 314 -6112 * 322 214 14 14 chr4 184268429 184268499 -20163 + L1MCa LINE L1 233 302 -6124 287 309 12 0 chr4 184268490 184268571 -20091 + L1MCa LINE L1 233 314 -6112 * 281 220 17 0 chr4 184268551 184268610 -20052 + L1MCa LINE L1 233 292 -6134 * 2922 233 42 28 chr4 184268612 184268801 -19861 + L1MCa LINE L1 233 418 -6008 1495 240 67 0 chr4 184268801 184269143 -19519 - MLT1A1 LTR MaLR 0 365 1 2922 233 42 28 chr4 184269143 184269553 -19109 + L1MCa LINE L1 418 821 -5605 2449 75 3 13 chr4 184269553 184269859 -18803 + AluSg SINE Alu 1 303 -7 2922 233 42 28 chr4 184269859 184270757 -17905 + L1MCa LINE L1 821 3309 -3117 183 42 0 0 chr4 184270806 184270830 -17832 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2034 114 4 7 chr4 184270832 184271113 -17549 - AluSx SINE Alu -32 280 1 205 221 57 123 chr4 184273102 184273224 -15438 + MIR SINE MIR 127 240 -22 190 240 0 80 chr4 184273321 184273371 -15291 - L2 LINE L2 -88 3225 3180 345 24 0 0 chr4 184274130 184274172 -14490 + (CA)n Simple_repeat Simple_repeat 1 42 0 95 49 0 0 chr4 184274549 184274693 -13969 + AT_rich Low_complexity Low_complexity 1 144 0 271 194 65 7 chr4 184274719 184274858 -13804 + (TA)n Simple_repeat Simple_repeat 1 147 0 2434 117 6 17 chr4 184274946 184275306 -13356 - L1PA14 LINE L1 -1 6160 5805 30 27 0 0 chr4 184275358 184275395 -13267 + AT_rich Low_complexity Low_complexity 1 37 0 391 296 30 10 chr4 184275499 184275698 -12964 + HAL1 LINE L1 95 297 -2210 574 285 215 17 chr4 184275863 184276151 -12511 + HAL1 LINE L1 510 854 -1653 2169 120 0 16 chr4 184276653 184276962 -11700 - AluSx SINE Alu -8 304 1 4342 68 9 14 chr4 184277880 184278437 -10225 - SVA Other Other -1 1385 832 361 184 195 0 chr4 184278722 184278809 -9853 + MER5A DNA MER1_type 9 112 -77 2529 63 0 0 chr4 184280990 184281291 -7371 - AluY SINE Alu -10 301 1 2257 105 0 49 chr4 184282390 184282715 -5947 + AluSg SINE Alu 2 310 0 2350 107 0 0 chr4 184283510 184283818 -4844 + AluSx SINE Alu 5 312 0 30 59 0 0 chr4 184284020 184284071 -4591 + AT_rich Low_complexity Low_complexity 1 51 0 1567 206 60 25 chr4 184284847 184285280 -3382 - L1M4 LINE L1 -3423 2723 2276 2061 124 7 0 chr4 184285609 184285900 -2762 + AluSx SINE Alu 1 293 -19 1653 175 36 7 chr4 184286617 184286920 -1742 - AluJo SINE Alu 0 312 1 978 195 0 2 chr4 184287898 184288160 -502 - AluJb SINE Alu -5 307 2